barcode	variant	HEK1	Plasmid2	HEK4	HEK5	Plasmid4	HEK3	Plasmid3	HEK6	Plasmid1	HEK2
AGCAGGAGACCTCAAT	alt_5729_new	0	0	0	0	0	0	0	0	0	0
CGGTGTAACTCCTCAG	alt_5729_new	0	0	0	0	0	0	0	0	0	0
TGCGGTAGGGCCTAAC	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GGTCAAAAGCAGACTT	alt_5729_new	10	12	13	6	20	7	15	10	16	6
GGAAGCGATGTATGAT	alt_5729_new	20	12	7	2	19	8	9	4	9	13
CAGGCCACTTCCCAAG	alt_5729_new	38	62	44	23	70	42	85	40	66	30
TGCCTTTTAACGTCCC	alt_5729_new	66	79	64	66	73	54	79	57	85	39
CAGAACTGTTCTTTGC	alt_5729_new	5	5	5	2	17	5	8	6	9	2
TACGGTAATTCTGTCA	alt_5729_new	31	51	33	34	30	28	40	29	52	40
GGTGCCCCTCGGGAGG	alt_5729_new	12	12	13	14	13	13	6	11	16	5
GTGTTTTCTTGGTCTT	alt_5729_new	0	0	0	0	0	0	0	0	0	0
AGGCCCTTGGATTCAA	alt_5729_new	6	11	10	13	10	10	7	5	12	3
CGAATATAAGGCGCGA	alt_5729_new	0	0	0	0	0	0	0	0	0	0
CGTTAGGTTTACAATA	alt_5729_new	2	4	6	4	3	3	6	6	1	5
TGTATATGACTTGCAC	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GCGTACCCCTAGCTAG	alt_5729_new	0	0	0	0	0	0	0	0	0	0
CACAATTGCATAGCTG	ref_5729_new	79	90	105	100	104	75	111	84	127	76
GTGTAGTGCCTGACCC	alt_5729_new	69	84	79	52	84	62	82	62	103	58
TCTAGATGTGCTCGTG	alt_5729_new	0	0	0	0	0	0	0	0	0	0
ATCGATTGTGCTGGTA	alt_5729_new	20	30	24	23	34	27	33	22	36	21
CATAGTTTCCCCACAG	ref_5729_new	185	163	168	150	228	123	217	147	203	121
CGCGGGTCATATACCT	alt_5729_new	50	55	50	59	69	52	68	49	65	39
CTTGTCCTGAACTGCT	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GTTCGTGGGACTTCCA	alt_5729_new	37	40	49	43	52	49	54	39	39	28
GTTTAAACGCTACGCC	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GTTTACCGTCCGGATT	alt_5729_new	19	22	17	20	23	18	30	8	36	21
CTATCGTTCCCATCCG	alt_5729_new	10	3	3	2	7	5	11	4	4	3
ACCCCCCGGGCAACGC	alt_5729_new	6	15	6	4	17	7	15	5	9	6
CCGTGGAATTTAATAG	alt_5729_new	16	7	18	13	11	17	17	10	15	11
TTATTATGTAGGAATC	alt_5729_new	29	23	29	14	20	13	33	19	21	20
CATCGTTTCGTCCAGA	ref_5729_new	14	32	39	27	30	21	32	23	44	25
AAGGTGAGGTTTGCGG	alt_5729_new	35	32	40	36	38	19	29	33	33	32
CAGCCACTCGTATATA	alt_5729_new	13	30	3	8	24	10	26	6	30	1
AAATTGGTCCCAGTCA	alt_5729_new	69	85	73	88	92	74	103	82	106	78
AACGCGAAACCGGTAC	alt_5729_new	0	0	0	0	0	0	0	0	0	0
ATACTCTATAGTCGTT	alt_5729_new	50	90	69	59	94	51	92	63	85	50
TTGGCAAATTGTTACG	alt_5729_new	21	39	30	31	42	9	40	29	60	24
TTAACTGGACGATGAG	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GACCGGAAATGTGTGG	alt_5729_new	48	78	62	55	63	39	51	39	79	36
TTTTGCTATTATATGT	alt_5729_new	37	39	44	31	41	43	51	25	56	26
GTCAATCCGGCCACAT	alt_5729_new	16	34	24	24	24	22	22	13	27	17
GATGGTCCCAGTAAAA	alt_5729_new	0	0	0	0	0	0	0	0	0	0
AGTTGCCCTGTAGATG	alt_5729_new	2	8	4	6	12	5	3	5	3	3
CAATGGTTTATCGCCC	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GCAAGCTGCACCCGTA	alt_5729_new	161	212	195	169	210	158	209	174	197	136
CAGGGACTGTACCGAC	alt_5729_new	28	45	29	18	46	18	52	25	36	22
GTAGCGCGCAACAGTA	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GTTCCTGGCAGGTGAT	alt_5729_new	69	93	74	70	91	66	83	58	111	57
ACTTTTCGCGTTCGTT	alt_5729_new	0	0	0	0	0	0	0	0	0	0
GCTTGGGCTGGTGTAA	alt_5729_new	60	62	60	50	74	35	68	50	71	33
CCCTCATAAGTCATGT	ref_5729_new	14	27	27	13	19	24	43	16	52	21
CTTTGGTGCGGCCCAT	alt_5729_new	0	0	0	0	0	0	0	0	0	0
TGTTCAGGTCCTAAGC	alt_5729_new	18	23	22	29	20	24	24	23	37	27
AAATCGACTGATGCTT	alt_5729_new	2	4	3	4	7	2	4	2	5	8
CATTTCCTCCGTTCCT	alt_5729_new	5	10	8	7	4	13	16	7	14	14
CCGCCACATACGTGCA	alt_5729_new	24	21	38	24	39	38	32	37	37	29
GCCAGCCAAATCGCTG	alt_5729_new	0	0	0	0	0	0	0	0	0	0
TTCTCGCGTAAGGACA	alt_5729_new	0	0	0	0	0	0	0	0	0	0
ACTGTTTTGGTTCTAG	alt_5729_new	0	0	0	0	0	0	0	0	0	0
CGCGGTGGTAGTATAC	alt_5729_new	0	0	0	0	0	0	0	0	0	0
AATTGTTAGTAATATC	alt_5729_new	11	28	29	20	33	18	24	14	29	11
TATACTTCAGGTCCAC	alt_5729_new	41	40	56	49	62	45	55	46	69	57
TTATTCCTTAGGCCCG	alt_5729_new	82	81	104	64	81	91	95	86	108	72
CCAGATACGATTTGAG	alt_5729_new	17	88	15	13	81	10	96	15	79	11
AGATTTTAAGTCCTTC	alt_5729_new	21	17	15	13	16	9	22	14	24	5
CGGGGAACGTCGCTTT	ref_5729_new	59	73	67	76	99	69	82	49	79	57
CACGGTCGGTGTCTCA	alt_5729_new	92	82	93	80	98	80	118	89	95	66
TTCGAGTTGCCCTTCA	ref_2605_RC	308	114	331	250	108	269	152	258	146	233
GCAGTTCGTTCTGTTT	ref_2605_RC	106	44	130	99	36	119	62	114	48	96
GGTAGTGTGCACATTA	ref_2605_RC	3	0	7	2	0	3	3	1	0	2
TTATCGATCTCCCCTT	ref_2605_RC	32	59	49	50	56	44	68	41	75	37
CGCTCCGCCATCCGTC	ref_2605_RC	20	9	27	14	23	12	11	17	9	19
GGTTCGGTTTCAATAG	ref_2605_RC	134	59	153	157	68	132	60	139	62	103
TTCATGCCATGGTTCC	ref_2605_RC	3	2	3	3	5	6	2	2	2	6
CATTCATGTCTCATGT	ref_2605_RC	8	4	9	10	4	11	9	9	6	10
TGGACATGGAATAGCG	ref_2605_RC	114	53	133	129	46	114	75	124	68	113
TAGTATATCCGAGGAT	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
GCCTTGGTTTATATGG	ref_2605_RC	122	83	181	175	64	143	56	135	66	114
TTGTGGTATCTTCATA	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
GTTTGTTATCTCTTCG	ref_2605_RC	93	33	127	93	50	84	38	68	36	70
ATTGTGGCGTTTAGTC	ref_2605_RC	37	19	61	35	18	44	19	43	17	45
TGACGCTTCTTTATAT	ref_2605_RC	34	20	38	30	16	20	14	17	15	24
TGTAATTGTCTCCTTC	ref_2605_RC	75	29	73	53	29	62	29	49	26	46
CTATATCAAGTGTCTT	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
TATCTACCTTGGTGCA	ref_2605_RC	365	174	484	417	205	380	190	403	220	357
TGCACCTCCTGGCCGT	ref_2605_RC	187	105	211	218	103	160	88	185	106	164
GATAGAAGTCGCTCAG	ref_2605_RC	56	20	62	57	32	50	24	60	25	42
TCTTGAGCTGCGCCCA	ref_2605_RC	172	81	223	180	82	154	72	152	90	150
ATCTATGCAGAAATTT	ref_2605_RC	260	98	288	253	90	242	117	225	92	190
GTGATCATGGAGTTTA	ref_2605_RC	14	5	11	15	8	14	9	21	15	14
TTGCGACCATATAGCC	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
AATCTACTTAGTTCTT	ref_2605_RC	10	5	16	9	1	8	9	10	4	7
CTCCACGGCTCAAGTC	ref_2605_RC	27	23	25	25	9	25	23	29	14	29
AATTTTACATTATTGG	ref_2605_RC	94	72	101	99	62	107	64	72	68	90
CGCTTTTTCCCAAGCG	ref_2605_RC	63	39	69	55	57	65	32	60	42	43
GTGCAGTTTTGTGATA	ref_2605_RC	61	46	66	73	38	54	41	55	54	46
TCAGTCTAGCCTGGGG	ref_2605_RC	50	19	50	33	21	37	21	43	23	36
GGAGTGTCTGGTTTTC	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
ACAGTTTGTAGCTCTC	ref_2605_RC	40	12	51	36	11	49	14	25	28	34
AGTGTATCCTTATCTG	ref_2605_RC	28	10	50	21	10	35	12	37	8	34
CCCCCGAGAGACCAGG	ref_2605_RC	42	52	54	55	56	45	89	47	68	42
TGCTTGCTGCTGTGGA	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
GTTGTTTTCTCGCTAT	ref_2605_RC	159	69	194	184	54	179	88	161	90	139
ATGGTAGGGGGTCTGT	ref_2605_RC	183	85	207	197	80	167	97	184	99	139
ATTTTTAACAATACCA	ref_2605_RC	41	12	64	41	15	35	17	46	8	32
AACCGCGGCTTTCAAT	ref_2605_RC	6	6	15	12	4	10	5	17	7	12
TTGATTACCGAGAGAT	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
TATCTCCCACCCCGCC	ref_2605_RC	41	26	62	53	21	59	37	45	34	40
AAACGGACTCTAAGTC	ref_2605_RC	310	156	314	301	162	246	194	251	191	236
TAGGCGTGCTCCCTCT	ref_2605_RC	67	39	105	105	43	74	54	64	44	63
CGGTTCCATTAATTTA	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
CATTGTAAAGGTATCA	ref_2605_RC	576	288	686	551	289	521	298	515	313	568
GTGGACGGATTTAGGA	ref_2605_RC	102	40	113	90	40	83	43	72	41	69
TGACTGGATACTTAGG	ref_2605_RC	0	0	0	0	0	0	0	0	0	0
TTGGTACTACAGGCTC	ref_2605_RC	11	10	14	11	3	7	3	8	7	5
GTCCTCCTCATCGGGT	ref_2605_RC	0	0	1	0	0	0	1	0	0	1
TCGCGTCGGGCTTGCG	ref_2605_RC	12	7	5	6	7	8	0	15	10	12
AGGTGCGTGGATCAGG	ref_2605_RC	178	93	227	214	77	184	91	219	80	168
TGAGTTGCCACGAGTG	ref_2605_RC	112	50	147	136	52	121	55	126	56	109
ACTTTGCGCTGCATTT	ref_2605_RC	2	3	7	4	4	7	3	2	4	2
ACGCCGTGGATAGTGA	ref_2605_RC	8	3	13	18	6	7	6	5	6	10
GAGTGTTTTGCTTGAT	ref_2605_RC	27	14	44	27	15	31	16	29	17	28
CGATCGACCATCTGCA	ref_5209_fdr	63	60	74	69	77	57	69	47	72	69
TGGCATATAGGGGTGT	ref_5209_fdr	29	51	42	43	40	30	50	34	58	33
TCATAAGAGGTATGTC	ref_5209_fdr	13	12	11	6	13	9	13	2	15	6
TCTTTGAAACGCCACT	ref_5209_fdr	17	11	14	16	18	22	16	11	14	11
TACTATGCGTTTGGTC	ref_5209_fdr	2	3	1	1	5	2	8	1	4	1
GGGGCGGTTACACCTC	ref_5209_fdr	101	126	130	85	110	91	132	88	124	84
CCTAGATTTTTTGAGG	ref_5209_fdr	200	220	197	178	217	179	255	155	270	169
ACTAGTGCAAGCTTTC	ref_5209_fdr	6	14	14	14	24	18	23	8	15	5
AGGTTGCGTCGCCTCA	ref_5209_fdr	4	17	10	7	8	10	8	4	14	3
TGGACATCTTGTGGAG	ref_5209_fdr	22	20	28	26	32	14	32	16	22	11
ACTTGTAACCTATGCT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGAGCACTTCTAT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
GTACATAAACGCTTCA	ref_5209_fdr	24	33	35	21	33	21	41	44	42	38
TGGGGTTTTCAATAAT	alt_5209_fdr	177	265	250	220	267	201	274	196	326	187
TCAGCTGCACTATCTC	ref_5209_fdr	46	74	50	61	74	48	49	60	98	46
TACGTTTGAACTGAGA	ref_5209_fdr	62	104	90	58	98	59	81	69	76	62
TCTCTTTCAATTCCTT	ref_5209_fdr	28	21	24	28	23	24	34	23	44	20
CTCAGTTATTCGCCTT	ref_5209_fdr	8	15	9	7	22	9	34	9	28	11
GGAGTCTGGGTTTGGA	ref_5209_fdr	23	22	24	11	22	13	17	15	9	17
TCGCCGGGTTATTCGA	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGAGCGTACTGAA	ref_5209_fdr	12	18	17	7	14	10	18	5	27	18
TTTGTTCATTCAGGAA	ref_5209_fdr	22	20	25	24	32	23	34	26	30	20
TTCATTTGGTCTCTCT	ref_5209_fdr	44	42	52	38	48	35	51	52	62	36
CCCCATCCAATAAGTC	ref_5209_fdr	117	159	165	162	124	123	183	115	149	81
GCGGCAGTTGGCTATT	ref_5209_fdr	48	43	61	51	46	32	59	36	42	34
TTGCCTCCTGGATTCG	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
GATTTACGATAGCTAT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTTATCAGGAATG	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGCCTTTTTGTAA	ref_5209_fdr	49	56	63	47	60	38	55	42	62	46
GTTATCACGTCGGTCT	ref_5209_fdr	29	53	35	37	37	29	40	30	57	31
GGACTTCCGTGTTACT	ref_5209_fdr	3	6	6	1	5	1	2	4	2	2
TTACCTCAAGACCTTT	ref_5209_fdr	73	90	81	86	98	72	122	74	97	81
GGGGCTTCCGTGACGT	ref_5209_fdr	76	78	86	76	90	87	100	86	110	79
CCATGATTCCGGGTGA	alt_5209_fdr	133	204	148	137	175	113	220	120	215	119
ACTAAGTGCCCAACGA	ref_5209_fdr	27	42	47	35	39	35	41	28	37	31
CATATGGATGGTGATG	ref_5209_fdr	18	29	28	30	38	34	46	29	45	19
CTCTAGATAAATTCCG	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
CGGCAGTTGCTCATTT	ref_5209_fdr	101	139	145	124	141	106	146	92	150	98
ACGAGATATAAGCGTG	ref_5209_fdr	17	23	24	26	34	26	34	17	35	20
CCAATTGGATTATGTC	ref_5209_fdr	75	86	97	81	77	75	85	91	81	69
CAGAGTCAAGACGATT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGTGTGACTATCT	ref_5209_fdr	38	58	58	48	65	36	73	49	70	34
TGCATTTCTCTGATCC	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
AGTAATACACGTCAGA	ref_5209_fdr	86	90	148	112	123	106	113	85	97	109
GAGCGGGGCCACATCT	ref_5209_fdr	23	45	43	46	39	19	40	30	40	30
TGATAGTATCCGGTTG	ref_5209_fdr	41	57	59	42	51	32	55	48	62	44
CCATTCGTTTTTCTGT	ref_5209_fdr	73	74	80	87	92	55	89	64	79	49
TACAACACCATTCAGA	ref_5209_fdr	144	174	147	159	201	125	216	147	215	119
CATGGGATTGAGAGGC	ref_5209_fdr	16	13	18	17	12	13	17	17	18	17
GATATTCCCTTCCATA	ref_5209_fdr	19	22	19	14	30	23	21	20	21	25
TATGGCGGCAGGCACC	ref_5209_fdr	10	12	21	22	17	20	14	14	14	16
GCGAATCTGTCAGGCT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
TACAACGGCCTTGAAG	ref_5209_fdr	28	40	33	35	51	38	56	34	42	27
CATCGTAAGTTCGGCA	ref_5209_fdr	3	6	10	12	7	9	5	8	9	5
GTTTATGTATCTGAGT	ref_5209_fdr	35	41	37	39	53	38	32	41	52	35
AGATTGTTCACTCGTG	ref_5209_fdr	59	70	36	45	64	45	72	35	69	35
AGGGTTGTGGACCATG	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
ATACTCCTAATAATTG	ref_5209_fdr	46	61	75	66	65	64	68	44	93	45
AGTGTGTTACGATTCG	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTACGATAGCTCT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
AAGGTCATACTTGTTG	ref_5209_fdr	29	51	33	41	50	33	41	43	33	32
CAGTTAATCGCTTATC	ref_5209_fdr	47	82	76	56	81	69	82	59	74	66
TTTTGCGGCGCAGAAC	ref_5209_fdr	52	60	69	59	70	62	59	62	74	34
CCGTACTCGGAATCCC	ref_5209_fdr	40	46	55	33	52	43	55	33	46	44
TTATTGTTTGTAGCTC	ref_5209_fdr	34	19	29	24	39	21	23	22	34	12
ATATCATATCAAGAAT	ref_5209_fdr	59	64	57	54	78	50	77	44	71	55
TCTGCTTCCTGTAGCG	ref_5209_fdr	7	6	12	4	10	7	5	8	13	8
TTTTTGACCTTCAAGC	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
GCTAAGTTTGTGACGT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
AGCACCTTTGGTCTGA	ref_5209_fdr	38	47	36	41	41	30	58	33	57	36
CTGTTCAGTTCAGAGT	ref_5209_fdr	18	26	23	15	23	24	28	14	37	20
GAATCAGGGTATTCGG	ref_5209_fdr	17	16	30	30	31	16	21	21	38	24
AGTTCTCTAACTACTG	ref_5209_fdr	11	23	13	18	25	13	13	6	31	12
CACCCGTACCTCTGAC	ref_5209_fdr	26	44	29	34	54	28	40	29	44	15
GTACGTCGGCGCCGGA	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
TAGACCTAGATTATTT	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCGGAGTGAAAGT	alt_5209_fdr	166	241	158	122	255	142	236	128	229	151
TGCGCGCGTTGGCTTA	ref_5209_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGGCGTTGGATCA	ref_5209_fdr	5	10	14	9	12	9	7	9	13	18
CGTAGAATGCGGACAT	ref_5209_fdr	33	50	47	39	43	48	50	47	52	36
GATTTTGGCACGGTTT	ref_5209_fdr	32	40	35	33	41	42	39	28	37	18
ATTATACTGGATCCTA	ref_5209_fdr	31	45	53	36	35	41	58	30	65	35
GTAGGGTATAGCTCCA	ref_5209_fdr	39	51	54	36	49	43	58	42	45	37
GTATGTTTCATTCGCT	ref_5209_fdr	51	77	66	52	75	62	73	66	89	71
AACTCTCTTGGTCTAC	ref_2913_fdr	53	33	52	37	30	42	38	44	45	47
TTGGCCTCGAAAATTA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCATTTCTCCCTG	ref_2913_fdr	116	38	113	102	67	68	62	99	76	77
CTAAGCACAATCGCGG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCTACAATGGCTTGTA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTTAGCTCGGCTC	ref_2913_fdr	28	11	28	27	17	21	13	21	12	27
ATTGCAATTTATTTGG	ref_2913_fdr	120	79	150	127	70	106	53	132	70	117
ATCAGGGCGTCTGCGT	ref_2913_fdr	10	12	16	9	12	17	16	12	24	13
CCTTCTTCAAACATAT	ref_2913_fdr	8	4	20	9	2	6	4	14	7	10
GTCTTTTAGGTGGGTG	ref_2913_fdr	10	6	12	8	5	9	2	3	4	5
CAGCGCCTAACTACTT	ref_2913_fdr	4	15	21	14	25	8	9	13	23	5
ATACAACCAGAGTAAA	ref_2913_fdr	13	5	23	28	8	22	4	19	6	23
TGAGCTCATCCGGGTA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGTAGTTCTCTAG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGCTAACGCCGC	ref_2913_fdr	0	4	8	5	1	4	6	3	3	2
TCTCCTCGGTGTTTTT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GTTGAATATTACTGTA	ref_2913_fdr	7	4	9	9	1	9	5	9	2	3
GTGGGGTTTTGTACGG	ref_2913_fdr	31	25	35	25	22	25	11	22	15	14
TTCTTCTGTTATCTCC	ref_2913_fdr	43	21	59	56	34	49	31	49	28	50
TATTTGGCTCGGAAGC	ref_2913_fdr	28	25	40	30	28	33	32	26	29	29
GTATCCGCGACATCAA	ref_2913_fdr	29	14	38	31	19	27	24	24	24	25
GTATTTGGCTCTCATA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTTTCGTTCGCT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGTCTTTTCATAA	ref_2913_fdr	11	6	9	14	14	14	12	15	23	15
TGCACTGAATTTAGGA	ref_2913_fdr	78	67	116	96	48	84	75	66	92	66
TGCGCGGATTTCTTCG	ref_2913_fdr	9	7	5	8	9	7	9	9	4	3
ACAGTGCCTCGTCGTG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTCGCCAGCTCAC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCGCATCAGTGCCATG	ref_2913_fdr	30	29	36	32	17	32	31	34	28	25
CCTACGGGTCATGCTG	ref_2913_fdr	39	22	38	33	18	19	20	24	26	30
GTGAATTTGTTAAAGA	ref_2913_fdr	14	14	25	13	21	18	24	25	14	22
CACTGAAAGTTGCAGT	ref_2913_fdr	4	6	5	5	8	7	4	0	2	6
CCGTGCAAATAGGGTC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCCCTTGGCCGGA	alt_2913_fdr	41	247	44	57	263	41	312	50	300	34
CCTAGCCCAGTGAACC	ref_2913_fdr	63	75	102	81	52	63	44	63	80	74
AGATAACGATCCTCTC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGTAGACTTGCTC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTCGAACAGGTAACGC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGGAATAGACTAATCC	ref_2913_fdr	75	38	118	114	55	96	59	94	59	96
GTGACACACCACGCCG	ref_2913_fdr	137	198	130	140	181	119	206	129	209	119
CCGGGGTAGAACGCGA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCTGTCGCTGCC	ref_2913_fdr	24	22	26	23	25	30	18	37	26	16
GTAGGCACATTTCTCT	alt_2913_fdr	64	52	82	70	36	71	49	62	63	52
CGCGCTGGAACCTGTC	ref_2913_fdr	149	115	192	199	150	145	148	173	128	142
TGGATTTGATTTAAAA	ref_2913_fdr	81	51	92	57	54	69	59	81	36	61
TTCTAACATTCCGGTT	ref_2913_fdr	8	12	12	9	9	7	6	16	8	10
TCTCATCTAACTCGAT	ref_2913_fdr	25	29	34	32	18	31	21	35	20	25
TGGCACTACCGTGTGG	ref_2913_fdr	46	36	41	26	31	30	28	33	48	37
TAACACGCCTCATACA	ref_2913_fdr	27	31	20	35	12	21	17	16	24	32
CTTCTGATATTCAGTT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTGTTGGGCATC	ref_2913_fdr	47	30	84	50	27	43	41	53	33	29
ATTAGAGAGCAGGTGT	alt_2913_fdr	51	40	69	65	48	57	59	48	63	47
ATTTCCATCGGTTGAT	ref_2913_fdr	48	55	88	50	44	52	61	57	61	33
TATTCTTGGATCTAAC	ref_2913_fdr	203	129	209	195	112	150	124	154	130	151
AGTCCGGGTCCGAAGG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGCATTCCTCAGT	ref_2913_fdr	128	102	133	111	88	107	99	102	99	112
GCATTTTCATACATAG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGCGCTTGTGCAC	alt_2913_fdr	15	18	26	22	27	23	28	16	20	21
GAGTTCCGCAGTCAAT	ref_2913_fdr	9	7	25	12	6	10	10	18	12	18
AATACCAGAACAAGGT	ref_2913_fdr	52	34	67	59	25	36	28	45	30	32
CTTGCATGGAGGTTGG	ref_2913_fdr	23	22	37	40	26	29	31	35	13	32
TTTACTACTCAGTTGT	ref_2913_fdr	15	12	22	17	9	22	7	18	15	17
TGCGCAATACTGAGGG	ref_2913_fdr	34	12	39	41	29	34	24	35	23	27
TATTCCCACCTGCGGT	ref_2913_fdr	10	13	20	8	14	9	7	10	13	8
GACCCCGGTAGGCCGA	ref_2913_fdr	29	28	41	42	28	37	25	27	16	34
TCCTATCGTCGCCCAC	ref_2913_fdr	7	8	5	10	7	8	8	1	6	5
ACCTGAAGTCGCGGTG	ref_2913_fdr	49	33	77	39	51	53	46	73	42	60
TCTGTAGAGTTATTGT	ref_2913_fdr	49	32	25	36	38	40	27	47	26	35
ACGTTTCATTTCCGCC	ref_2913_fdr	116	90	201	138	83	165	98	115	101	125
CTGTTTTTATCTGGTT	ref_2913_fdr	67	31	79	62	34	57	33	56	34	48
TTCACGCAAAGATGGA	ref_2913_fdr	4	3	15	9	4	11	3	11	11	9
CCGCCTATAACTACTT	ref_2913_fdr	7	13	19	9	4	13	8	11	11	10
TGTATCATTTTTGTTA	ref_2913_fdr	5	18	14	15	6	13	13	14	17	8
CGGATCACTTGGTTCG	ref_2913_fdr	7	3	3	2	2	4	1	7	4	3
GATGGATAGTTCTCGG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
AAGCCCGTCCATACGT	ref_2913_fdr	47	50	69	46	37	53	54	52	52	45
AACTCCTAGGACACTC	ref_2913_fdr	2	8	13	6	16	4	8	5	15	8
TCAGTTGGGGCGTAGT	ref_2913_fdr	426	348	551	466	327	393	392	407	344	415
GATCGGTAGATTTAGT	ref_2913_fdr	28	10	40	21	19	25	26	31	20	31
TTCGTTTCTTATGGTA	ref_2913_fdr	87	71	96	92	58	100	54	67	68	84
TCTCCGGCCGCTGAAA	ref_2913_fdr	30	45	31	51	55	35	40	41	45	29
TTCGGATTAGGTACAT	ref_2913_fdr	37	29	47	42	26	36	20	36	37	31
CATTGGTTCCGAACGA	ref_2913_fdr	49	38	35	30	30	32	28	48	27	25
ACATTCACGGCTCCGC	ref_2913_fdr	70	43	102	83	52	76	56	62	59	57
GTAATTTATGATTGGT	ref_2913_fdr	96	76	147	114	91	93	87	92	96	84
CGCAATTAATGTGTGT	ref_2913_fdr	10	3	8	12	1	6	4	10	2	5
AAGTAACTCGGACGTT	ref_2913_fdr	34	17	29	26	20	17	21	22	19	31
TTCGGCAGGGGTTTCC	ref_2913_fdr	16	8	28	15	9	10	12	15	8	15
GTGAGACGCCTTTACT	ref_2913_fdr	13	7	18	14	12	18	10	16	16	21
TCGCGGGTCCACTGCG	ref_2913_fdr	4	2	6	4	5	8	3	2	11	3
TGCAGATTTACCAGTA	alt_2913_fdr	32	21	15	24	25	24	16	23	16	20
TGACTACTGTCTTGGA	alt_2913_fdr	93	81	92	81	98	75	63	74	107	91
AACACATCACATGAGG	ref_2913_fdr	128	99	187	152	103	155	83	138	126	113
TTAGTTGCACCGTGAC	ref_2913_fdr	35	43	71	39	43	40	53	55	29	64
CTACAAATCTTGTGCT	ref_2913_fdr	202	144	268	203	165	205	148	215	166	191
AATCATAGCGGTTATT	ref_2913_fdr	25	18	47	27	12	25	22	35	16	16
GCTAAAGAACATTACG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTCCTCCATTTAA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GGATTTGTTCATTTCA	ref_2913_fdr	23	13	22	17	13	24	25	23	26	18
ATAGCGCATTTCAACA	ref_2913_fdr	22	17	22	23	15	35	18	25	19	41
CTCGTAAACCACCACT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CAATAAAACACTTAGA	ref_2913_fdr	7	1	10	15	14	11	4	12	8	9
TCTTGTACGTTTCTTT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGTTTGCTTGGTG	ref_2913_fdr	134	107	156	141	96	123	98	131	101	118
ACGGTTCAACTCTATG	ref_2913_fdr	134	103	181	132	104	144	100	139	109	111
ATATTTTGTTCGGGGT	ref_2913_fdr	35	28	43	38	25	40	32	36	30	37
GGTTTATCACGCTTCC	ref_2913_fdr	24	16	33	30	24	35	18	41	23	26
GTGATCCTTATAGCCT	ref_2913_fdr	127	72	157	132	80	120	98	117	81	97
TTTGGTTCACTACTGG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAGCTCTTAAGCC	ref_2913_fdr	53	31	63	46	38	38	41	45	32	29
CAATTTCTATCATCTG	ref_2913_fdr	20	12	22	23	7	11	9	15	13	15
ATTTCTTGTACTTCCC	ref_2913_fdr	102	59	111	131	75	111	66	111	63	89
TCTCTCGATGCTCTTC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CCGTAACACTTCGCTC	ref_2913_fdr	78	38	71	91	57	54	50	60	48	54
CCTCGTTTATAAGCCT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGGTACTCAGCGTCCT	ref_2913_fdr	23	23	42	38	33	26	23	31	24	36
ACCTTTTACTCATCTT	ref_2913_fdr	105	60	149	121	72	97	64	109	65	94
GCCTAGAGTTAAGAAG	ref_2913_fdr	5	5	3	2	4	1	0	4	3	5
CAGGCGTACTTTTTTC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAATAGATGCGAT	ref_2913_fdr	9	10	19	28	20	20	9	12	15	16
GGTCTGTTCAAGCGTG	ref_2913_fdr	69	36	106	77	46	67	54	72	43	60
CGGACGGGGGTAGCCC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCCCTACCCTGCA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGATTCTGGGCCC	ref_2913_fdr	1	0	2	3	1	2	1	0	5	0
CTCAGATTACGCTTGC	ref_2913_fdr	29	23	30	30	19	23	34	31	36	33
TGCACTCTCCTTAGCT	ref_2913_fdr	76	116	67	70	97	76	124	47	103	55
TGGGTTCTGAGTCTGG	ref_2913_fdr	50	27	52	48	27	50	49	42	42	44
TTAGCTGGTGTCAACC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TCTATGGGCCTACTGG	ref_2913_fdr	14	13	16	16	11	16	12	11	16	11
ACAACCAGAATGATGG	ref_2913_fdr	26	12	13	14	18	20	12	16	17	19
CTACTACTCTCGACTT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTAGTCGCTATAGTGG	ref_2913_fdr	39	54	60	53	68	47	51	40	49	45
ATGTTTATGCAGTCAT	ref_2913_fdr	62	47	75	68	38	57	56	55	58	62
GAAAGGTTCGTAATTT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCCCCTGAGAGTG	ref_2913_fdr	20	5	13	20	5	9	12	13	6	14
ATCGGTCTCAATTTCT	ref_2913_fdr	46	14	48	29	27	37	24	31	24	31
CTCCAGGACTTATCAC	ref_2913_fdr	57	42	60	48	48	58	54	57	40	55
GTGCTATCCGGATGAG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CGGTGTCTTATGCTCG	ref_2913_fdr	25	17	37	23	24	12	17	25	16	24
CGTTCGATGCTATATC	ref_2913_fdr	15	15	25	17	24	17	24	17	30	18
ATTCAGGGGTATCTAC	ref_2913_fdr	21	24	19	21	15	16	22	10	11	26
TGTCATACGAAGTTTA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGCGGGTTCTATC	ref_2913_fdr	28	10	41	22	21	33	22	27	20	25
GCGAGGTTTTGCCATA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTTCAGTCTTCTT	ref_2913_fdr	0	0	0	2	0	0	0	0	1	1
CAAGGACCTTCTCTCC	ref_2913_fdr	45	27	62	65	53	51	28	41	49	49
CGGTAATTAAGTGAAT	ref_2913_fdr	90	74	113	121	98	91	102	93	93	88
AATACCAGAACTCGGC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
AATTGCTTCTAGGGGG	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
CATTTGGTTGGTGAGA	ref_2913_fdr	3	0	5	2	1	1	5	2	1	4
TAGCATACTGACAGGC	alt_2913_fdr	50	42	60	56	37	37	43	41	35	41
GTACCCCGTATCATTT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCTACAGCAGCTT	ref_2913_fdr	231	190	274	291	184	214	187	229	167	196
GTCAGTGTCTTTTGCT	ref_2913_fdr	66	68	77	73	49	67	59	63	42	49
ATAGGCTGATTTGATG	ref_2913_fdr	19	22	27	29	21	19	7	31	20	20
CTGCGACGTTGTGACT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TTAATTTAGGATATTG	ref_2913_fdr	40	25	55	35	21	33	31	52	16	28
CTCTGGAGTCTGGGGA	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGCGCCGCACTAT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCAACGGCCGTTTAAG	ref_2913_fdr	39	27	31	43	31	28	28	38	29	25
GAGTTTTAGTCGTAAC	ref_2913_fdr	58	47	70	63	45	61	38	42	46	61
CTTTTCGACGAGCTTT	ref_2913_fdr	110	53	145	99	61	99	71	101	67	92
ATGTATCTATCTCCTT	ref_2913_fdr	18	12	35	20	15	21	11	22	7	21
CCGGTAGCCAATAAAC	ref_2913_fdr	56	75	72	66	80	43	70	52	74	50
GCTTCAAGTATTTTTA	ref_2913_fdr	17	15	20	29	10	16	17	18	11	13
CATATTTCATATTCGC	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
GAATTCGTTTGCTTGC	ref_2913_fdr	68	31	80	81	38	61	36	78	40	49
GGTAAGTTGTGTTCTA	ref_2913_fdr	157	99	193	179	129	168	126	165	105	155
AATGAGATTAGGAGCT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
TATGCATCTCTCTTAT	ref_2913_fdr	91	50	80	111	64	84	34	82	49	88
GCCAGTTTCCATTGGT	ref_2913_fdr	30	39	35	33	21	27	28	39	26	31
AGCTCTATAAAACGGC	ref_2913_fdr	24	26	46	31	15	34	25	20	29	27
ATGCGACTTTGGTGCA	ref_2913_fdr	44	19	38	29	18	20	23	23	16	27
GTTCATTAATTACGCG	ref_2913_fdr	27	22	49	31	24	28	28	37	25	37
AACTGAGATAGTCACC	alt_2913_fdr	91	39	104	82	57	69	41	69	45	89
TACGGACAATTGTCGT	ref_2913_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCCGTCCGAACAG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
TTTCTGACAAACCCTA	ref_829_RC	21	23	17	10	16	16	23	11	12	14
TCCTTCCGGTACTTTT	ref_829_RC	32	30	33	34	39	37	37	29	26	34
TCTGCGTATCATACCA	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CCTTATACGGCGGATT	alt_829_RC	7	16	10	15	16	10	16	8	13	10
TGACCAGGGTAGAAGC	alt_829_RC	12	25	26	13	12	9	15	14	20	13
CGGGAGACTTTGTTGT	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CGAAACATCATATACG	alt_829_RC	26	19	21	20	25	20	21	12	28	19
GGAAGCTGTACAACCT	alt_829_RC	18	43	44	29	44	23	49	35	34	19
AGACAATTGTGTTTAG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GTCACTAGAAACCGAT	alt_829_RC	142	122	164	122	163	141	156	147	186	124
TCCTCATTATCTGGGC	alt_829_RC	2	5	5	3	6	4	4	4	7	3
CACCAAGTCCGGGGTT	alt_829_RC	84	106	128	93	95	106	105	67	114	106
AGTCATCGCCTTTGTC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GTTATCACCATTTAGA	alt_829_RC	54	56	61	56	52	47	54	52	73	36
TAGGGGGATTGTCTTT	alt_829_RC	7	22	14	7	15	8	14	13	10	12
ATCATGGCTCATCCCG	alt_829_RC	9	13	15	15	13	10	11	12	5	11
TCGGTATTTCAATGAG	alt_829_RC	7	13	10	4	9	6	14	6	9	6
ATGTGCTCGCCTCACC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
TACCCTTTGACCAGAA	alt_829_RC	3	7	4	3	2	4	7	2	8	2
CTTTAACACATGATGC	alt_829_RC	51	72	79	38	78	40	55	41	74	49
ACAAGACAATTTTACA	alt_829_RC	25	24	22	24	17	20	18	21	25	20
GGCGAATTTCGTTGTC	alt_829_RC	131	147	164	127	147	107	163	98	146	97
CATCTGTTTAGTGGTT	ref_829_RC	21	31	24	23	43	25	50	15	41	20
TTCGAACGAGTGGCAC	alt_829_RC	92	109	115	79	111	103	135	104	100	101
TTGGTATTACCAGTCG	alt_829_RC	1	9	5	7	4	6	9	0	6	6
TCTTATCCATTCACCT	ref_829_RC	48	60	50	44	74	51	61	43	75	55
ATGGCACCGGTATACT	alt_829_RC	43	33	40	36	46	38	56	30	48	49
TAATCACAAGTTTATC	alt_829_RC	9	11	14	10	1	13	13	6	12	9
ACGCTTCGAAGTGTCG	alt_829_RC	7	6	8	12	21	10	6	5	11	2
TTTGGAGTTGGCACTG	ref_829_RC	11	15	15	14	19	14	13	10	23	12
TTGTCGCCTACCTCAA	alt_829_RC	6	6	2	5	6	3	5	3	7	2
GCCATCCTAAAATAGC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GAGTTAGTGCACTGAT	alt_829_RC	6	1	2	4	4	1	5	6	4	5
TCTCAGAGTGGATCCA	alt_829_RC	7	30	15	11	13	10	12	6	11	18
GGCATCCTTGCAAGTC	alt_829_RC	57	73	71	80	74	66	84	72	69	66
CAATCAGGTGCGATAA	alt_829_RC	29	46	42	28	31	37	48	21	51	33
TATATAATCTACCCCG	alt_829_RC	10	21	7	7	26	14	18	11	12	15
AGGGCATTACGTGTAA	alt_829_RC	0	0	0	0	0	0	0	0	0	0
ACCCCGGACTTCTTCT	alt_829_RC	8	10	16	11	16	9	18	8	13	8
TCCCTATTCCCTTAAC	alt_829_RC	0	0	0	2	0	0	0	0	0	0
GGAAAGAGGCCGTTCC	ref_829_RC	16	15	20	8	21	9	11	13	24	11
AGAGATTTTAACATGA	alt_829_RC	11	18	17	7	21	14	14	8	17	18
CAAACAATCCGAGCCA	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CTGTTGCGAGTTATAG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GCATCACCGGAAACGT	alt_829_RC	25	24	30	19	36	16	43	27	37	27
TGCCGGTTCCGGTACC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
ATTACACTTTATGTGG	alt_829_RC	16	19	19	20	19	20	21	13	23	9
ACTTCTTTGAAGATAT	alt_829_RC	16	25	24	27	15	17	26	20	21	18
GTCAACCACGAACTTA	alt_829_RC	3	0	2	2	4	2	4	2	3	5
GAGTACAGTGACTTAG	alt_829_RC	9	5	13	8	10	8	8	5	6	6
TTCGCTCGTTTTTTGC	ref_829_RC	4	1	8	5	4	3	6	6	2	3
TACGCAATGAATTTCG	alt_829_RC	11	8	30	16	11	13	10	7	13	7
CGTCCGACTGCTTAAA	alt_829_RC	26	19	40	29	27	25	40	27	44	23
GTATTGCTCTGGAAGT	alt_829_RC	0	0	0	0	0	0	0	0	0	0
ACTGATGCACATCAGC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GGAGTTGTGGACGTGA	alt_829_RC	75	69	59	61	89	68	80	79	87	54
TAATGCCTTAGTTAGC	alt_829_RC	40	38	51	44	57	67	37	38	49	35
CCCGTTGAACGTCGAC	ref_829_RC	18	40	17	17	30	23	33	7	32	15
TGTCTAAAATTGTGCT	alt_829_RC	24	24	28	34	34	14	23	10	40	18
GGGACTGTTCTCTCGC	alt_829_RC	52	85	47	34	92	43	124	40	109	41
CGGGTACGGTTAGCCC	alt_829_RC	18	19	22	19	14	12	18	21	24	15
GGTATCGCCCTGTGAC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GATGTAATCGGGTTCA	alt_829_RC	33	26	34	27	28	46	29	34	35	42
ATCCTATACGTTCTAA	alt_829_RC	31	30	46	28	41	12	31	27	39	34
TCTTGCTATATTTCCT	alt_829_RC	27	31	24	19	31	33	32	22	23	19
GTGGTTCCCTAGTTGT	alt_829_RC	46	59	60	50	69	37	59	61	67	50
GATTGGGATACCGTGT	alt_829_RC	3	11	9	10	7	10	17	5	13	4
ACTGGCTGTCGCTACT	alt_829_RC	7	5	3	7	7	10	5	9	5	5
GAGTTAATGCACAGGG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CCTTGCCTGGAATTCT	alt_829_RC	26	32	20	16	20	24	28	15	27	11
CTTGCTTTTTTATGTG	alt_829_RC	14	14	20	15	20	14	24	11	28	7
GTATGGCCCCAGTTGA	alt_829_RC	5	7	12	7	5	10	6	4	4	9
CCACTTTTGGATTTCG	alt_829_RC	6	1	3	2	4	4	1	1	6	3
CCTCTCGTACGGGACA	alt_829_RC	20	26	23	20	27	21	24	14	21	14
AGTCGAGATCCTATCG	alt_829_RC	138	228	219	181	183	176	215	169	198	141
CTCATTCTGTACAGTC	alt_829_RC	43	55	52	39	70	27	67	35	87	30
TCTTGATCTACTGGTC	alt_829_RC	5	8	15	7	8	5	21	10	10	8
CATCATGGCGTCTATG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
TCGGCTTGATCTGCCT	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CCGATCCAGGGCCCGT	alt_829_RC	55	54	56	65	37	50	60	38	43	40
CTTTATACCTTGCATT	alt_829_RC	49	61	72	45	52	44	55	51	57	40
GACATATTGGTTCGAG	alt_829_RC	31	33	44	29	38	36	37	35	38	23
GGTAGAACAACCCGTC	alt_829_RC	6	10	10	11	9	9	20	11	11	10
TGGCAGCCACCACCTA	alt_829_RC	16	8	26	15	12	18	15	13	12	12
GTCATGCCTTATGGCC	alt_829_RC	22	22	23	19	22	13	23	10	21	20
AGACGGACAATGTCGG	alt_829_RC	29	26	22	29	33	30	22	30	19	38
TAACTTAATTCTTATG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
TCCTCTGATTTTAACC	alt_829_RC	58	75	73	70	91	68	65	53	94	51
AACTACTGGCCTAGTT	alt_829_RC	24	34	30	20	24	21	32	20	34	21
CCTCATTGTGATGACT	alt_829_RC	22	33	42	33	33	43	34	29	49	31
CCTTCATTGTTAGTGT	alt_829_RC	3	29	3	10	29	6	28	4	38	9
TGGAGTTTGTATCAGC	alt_829_RC	20	28	20	21	19	23	20	11	27	14
AGGTCTTCCCAAAAAA	alt_829_RC	74	56	79	43	64	64	80	57	67	71
ACGCTTGACTCACGAT	alt_829_RC	4	9	11	16	15	13	14	14	8	13
GTTTTTAACCAAAGCG	alt_829_RC	9	5	13	7	14	11	10	4	7	13
TTCCGGAGCTGCAACA	alt_829_RC	0	0	0	0	0	0	0	0	0	0
ATGTATCCAGACCGGG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
ATTCGCAGAACTAACG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
TGTTAATATGTGATGC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CATTGTAATTACATGG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CACACTCTTATGAGTC	alt_829_RC	21	16	26	26	35	12	19	22	24	19
CTGTATGGGGTCACTC	alt_829_RC	6	14	2	3	10	4	16	4	14	4
TTACATAGTTGTTTGG	alt_829_RC	72	92	111	82	89	81	136	68	138	85
CGATCGCACCTCTCGA	alt_829_RC	33	44	43	40	40	36	44	47	42	37
TGTTGCAGCCGCCAGT	alt_829_RC	11	21	21	14	15	13	20	11	21	13
AGCAGTGTTCCCGGGT	alt_829_RC	38	48	54	40	41	33	50	31	57	45
CTCCTGGATGTGTTCG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
TTTGTCTTAGTTGGAT	alt_829_RC	9	35	20	25	23	13	23	13	20	12
AAGGTCTGGTATGTAG	alt_829_RC	1	0	2	3	0	3	0	0	1	1
AGCGAGCACCAGCAGA	alt_829_RC	4	0	5	1	3	0	1	1	2	0
TAGCATAATGGGCTCC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GAAGGCTCGGTACAGC	alt_829_RC	72	84	72	76	69	70	69	59	79	48
CTTAATGATAATCCCT	alt_829_RC	96	68	120	76	79	46	73	56	79	57
GGATGCCGGGGACATG	alt_829_RC	18	19	25	13	19	22	21	17	14	17
TATTGCATGGCACTAG	alt_829_RC	24	27	30	24	31	31	40	25	24	25
GCCACGAACTCGAAAC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GTGAGCAGAAGATTTC	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GACTTACCTTCAATGG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGTGGGAGGTTT	alt_829_RC	11	10	15	9	11	12	13	7	13	8
TAATCGTTAACTCTGG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
CTGTATGTGGGTCTAG	alt_829_RC	0	0	0	0	0	0	0	0	0	0
TGATCTAGTCGACTTT	alt_829_RC	66	84	77	73	91	59	84	68	80	75
GAGCTCGTGCTTTATC	ref_829_RC	7	8	4	8	10	11	9	2	11	8
TGTAAACTTGTTGGGT	alt_829_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGTATGTTAGGC	alt_829_RC	30	32	29	26	50	29	35	32	31	18
TTTGCATATACACTGG	alt_829_RC	15	9	10	10	19	6	12	13	14	17
CTCCGAATTGGTTTGG	alt_6061_new	7	5	5	2	12	4	19	5	6	3
GACGTACTGTCAGTGG	alt_6061_new	15	16	13	7	20	18	8	6	22	6
AGAGTCTTCTGACCTC	alt_6061_new	2	5	4	3	3	4	6	2	9	4
ACACGCCCCGATGTCA	alt_6061_new	0	0	0	0	0	0	0	0	0	0
CTTCTAGCGTTTGATC	alt_6061_new	35	53	54	31	43	43	44	33	61	33
CTGTCTGACCGTCTTC	alt_6061_new	36	32	44	25	35	23	37	31	59	25
TGCTAAGATTGCAGAC	alt_6061_new	14	22	15	12	19	20	19	17	23	18
ATCCTTGTATTACACT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
CCGACATCCCAAGCAC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GGCGGACGTGAATCGT	alt_6061_new	21	20	39	25	19	19	14	20	20	12
TGGCGTTGCTTCGTTT	alt_6061_new	45	86	75	55	78	63	106	54	96	57
TCTTGTGTGCTGCATG	alt_6061_new	1	6	6	4	2	3	5	2	3	2
CCATTAATTTGTTCCG	alt_6061_new	11	21	24	10	17	18	21	14	20	4
TTGAACGTATCGACGT	alt_6061_new	60	65	60	59	81	60	77	57	83	57
ATCAGTATTTATTACC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ATAAGCAATGTGCTGG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GAGTATAGTCTGTGAG	alt_6061_new	24	62	46	28	46	32	50	14	75	21
GCAGACTCTCCGTCCT	alt_6061_new	1	3	4	5	7	7	14	3	6	2
TTCCAGTCTCGCTTTG	alt_6061_new	10	3	5	5	3	4	2	6	6	4
ACGGATCTTTCCATCA	alt_6061_new	0	0	0	0	0	0	0	0	0	0
CGGTATCGGGGTACCG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GATCATAATTTCTGGA	alt_6061_new	28	36	44	38	35	20	39	31	44	23
TTTCAGCGACACGTTA	alt_6061_new	12	13	9	7	16	8	18	6	15	9
TTGTATCCTTTTTCCG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TGTACTATCTGCTCTA	alt_6061_new	14	25	20	20	27	10	23	15	16	16
ATATTTATGTACCCAG	alt_6061_new	34	34	33	40	55	27	45	22	49	33
TGTGGGGCATCAATGC	alt_6061_new	7	19	19	7	17	8	25	19	18	3
GGATGTTACATTAGGT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
AGCCTGTGGTTCTAGC	alt_6061_new	45	99	73	55	116	62	95	44	96	53
TATTTAGGACTTAGTC	alt_6061_new	45	68	51	55	69	49	50	40	65	39
ATTAGGTCCGGCTATC	alt_6061_new	11	16	22	18	21	18	10	8	24	14
AGCGATCTTGCATATG	alt_6061_new	5	9	4	7	10	8	9	2	5	6
TCATTTATTTTCGGCT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GTCTAAAATCCATATA	alt_6061_new	26	32	29	12	36	17	44	23	37	20
ACGGCCGCCTTTCTTT	alt_6061_new	22	30	38	28	40	27	34	25	41	16
TTTTTATACGTTATGG	alt_6061_new	7	3	4	2	1	4	3	1	4	3
GCTGGGGAAATAACGG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ACGTCGTGCTAAAATT	alt_6061_new	6	7	5	4	9	4	5	2	9	3
CTGGCATGCTCCCGTC	alt_6061_new	1	3	3	5	11	4	5	3	14	0
CCTGGTTCTGAGTGAA	alt_6061_new	7	12	4	7	12	14	11	5	26	7
TAAGATGTACTTGTTC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TCCGCACGTTGCCGGG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ATGCGCTAAGTAGGCC	alt_6061_new	34	39	24	26	35	22	45	27	33	22
CAGGTAGCTTAAACTG	alt_6061_new	2	7	1	6	9	3	6	4	10	1
ACCCCAATGCACCATT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GGTGTTTATCGCCGTA	alt_6061_new	7	4	5	9	7	2	6	8	2	4
CATAAAGAGAAGGCGC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GACAGATCTGTACACT	alt_6061_new	14	26	27	18	33	20	32	20	18	21
ATAAAGATATTAACCT	alt_6061_new	9	12	24	11	16	6	17	17	15	14
TTCACAAATCTAGATT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ATCCTTGTTCATATCA	alt_6061_new	4	2	1	2	6	5	2	8	2	2
CCCTGCATTGAGGGCT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TTCGGAGCTGAACGGC	alt_6061_new	42	37	39	40	50	30	39	36	54	34
TTGTATCAAGGGCTCC	alt_6061_new	33	36	25	26	22	29	27	24	29	13
GCGGTAGTCTCGTTCA	alt_6061_new	16	23	16	14	15	11	13	4	10	6
ACAATTGAAATATAAT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
AAAGGCTTGATGTCTC	alt_6061_new	34	32	30	32	39	34	30	28	41	33
ACTGCTAACGTCAGTT	alt_6061_new	35	45	49	30	52	33	67	33	72	38
AGGTTAGAACCCCAGA	alt_6061_new	54	82	64	45	76	71	87	62	93	60
TTAATGCTCGTTAAGG	alt_6061_new	8	16	18	13	16	12	17	7	16	10
TTCTCAGTGGTTTTTA	alt_6061_new	53	48	46	32	75	34	54	38	42	32
CTCGTATTTCCGGAGA	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GTCCACAATGGTCCCG	alt_6061_new	27	37	27	27	26	32	37	24	36	18
AATATCGATATGCGCC	alt_6061_new	16	47	28	28	38	20	44	21	41	15
GTCGATTAGAGCGTAT	alt_6061_new	80	102	71	51	103	73	83	54	115	63
TACGTGATGTCATTCC	alt_6061_new	11	16	16	13	12	19	15	15	8	21
TATGAAATCTACCTGC	alt_6061_new	38	31	40	36	54	40	48	27	55	28
GGTTCTTAGCGCCGAT	alt_6061_new	12	33	15	16	19	20	23	22	16	11
CCGACGCTTTGCTCGC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
CATGTCACTACGCCTA	ref_6061_new	12	14	14	7	21	11	17	7	15	11
CGGAGCGCTCCAACGG	alt_6061_new	4	8	8	7	8	9	11	7	9	13
TGGTTAATCAAGTGGG	alt_6061_new	40	60	61	51	55	39	67	47	64	24
CTCGATCCTTGTTCAC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ACCCTGTATTATTGCT	alt_6061_new	7	15	12	14	17	6	12	5	15	7
CAACTGGGGCGGTTCC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TACCCTGACTCCTGCT	alt_6061_new	57	45	53	32	65	42	70	20	61	32
CTGGTCCTTTGTCTGT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TCGGAGCTCTAGGTTC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ACATCATCGCTCTCTT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
CTAGGTCTGTGGTTCG	alt_6061_new	38	44	49	24	65	34	58	32	56	44
GTGGTCCAGTGACATC	alt_6061_new	12	21	13	12	15	9	10	1	19	14
CCCCGTATTGCGACAC	alt_6061_new	2	8	3	4	1	1	5	2	4	1
TAGTTATCCGCGGACT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TAGAACCTTTCGTAGT	alt_6061_new	65	72	45	25	69	39	76	34	87	40
TCGTTGAAATTAAGCC	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ACTTGCTCTGTATCTG	alt_6061_new	190	239	226	202	249	158	279	173	249	148
TATGGCAGGGTGACAA	alt_6061_new	4	5	6	4	8	8	18	8	9	7
TATCAATCTCGATTCT	alt_6061_new	20	27	21	21	29	13	24	13	32	14
GCGCTTGCCTATTCTG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TATCTAAATGTGATAG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TCCTCGCCTCCTTTCT	alt_6061_new	14	18	18	14	16	15	14	10	17	10
CGTATTGTCTATATTC	alt_6061_new	4	0	0	2	1	2	1	1	2	2
TACACGGCGTGTAAAA	alt_6061_new	64	82	62	53	89	61	78	73	83	58
CCTGGTTGTAATGTAT	alt_6061_new	2	2	4	2	4	4	2	2	1	6
TTCACCCCCTTCTTTG	alt_6061_new	8	26	10	12	15	5	24	6	17	9
GTCTAATGATGTCGAC	alt_6061_new	27	40	31	27	46	25	45	24	48	33
TGCATAAGTGTTCTTT	alt_6061_new	4	3	1	5	0	0	5	1	7	6
CACAATTGCTTGTTCA	alt_6061_new	25	42	42	44	39	24	52	39	67	28
TACAAGCGTCGTGACT	alt_6061_new	40	43	48	45	61	45	46	43	53	45
GCTGTCTTTGCTTGGG	alt_6061_new	5	5	9	6	12	1	13	3	7	3
TTTTTTAAACGCGACT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TTGCTCCCCGTCGCGA	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TTTTTTTAAACGCGAC	alt_6061_new	98	147	105	102	139	99	146	87	178	66
CTTCTCCCATACTTGT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
GATACTACCGTCCTCT	alt_6061_new	29	57	35	28	51	25	62	28	63	39
CGAACTCAGTATATGT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ACGGGCCATGTACATT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
CTTCCTTTTACGCACT	alt_6061_new	0	0	0	0	0	0	0	0	0	0
ATGTACGCATTTCAAG	alt_6061_new	0	0	0	0	0	0	0	0	0	0
TATGCTCGATGATTAA	alt_6061_new	20	31	17	19	34	12	21	26	36	13
GTGTTCATAGTTCAGA	alt_6061_new	33	37	40	33	59	39	52	15	48	25
GGTGATCAGGGCCATA	alt_6061_new	2	4	2	5	0	2	5	0	8	1
CGCTCCTTAACGGCAA	alt_6061_new	3	5	5	6	3	2	19	5	16	4
TTGTCGGACGTTAGAA	alt_6061_new	0	0	0	0	0	0	0	0	0	0
AGAGTGGTGATCCTGT	ref_5880_new	324	183	374	341	159	342	191	288	195	304
TAGCCGCAGAAGCCAA	ref_5880_new	124	80	165	146	90	114	76	118	95	108
CAGCCAGAAGCTACAA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
ATGGCCCTTGCTGTCC	ref_5880_new	73	41	75	55	18	52	30	67	38	65
GAAAAGCAATACCGAA	ref_5880_new	81	39	58	65	48	55	42	60	38	48
CGGACGCTGGGGCGGT	ref_5880_new	59	30	64	55	24	46	31	44	32	45
TCTCCACCGTATTGGT	ref_5880_new	56	36	53	43	25	41	36	29	44	31
GTTCAAATGCACATTC	ref_5880_new	2	1	5	4	2	3	3	1	2	2
GAATTCATTGCTTCTC	ref_5880_new	19	9	33	22	11	26	10	12	11	18
GCAAAGCCCGAGAGTG	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CATCAGCTATTGTGAG	ref_5880_new	53	39	79	59	55	65	51	57	52	46
GCATCGGATTTGGCAA	ref_5880_new	61	46	112	75	52	61	52	62	41	56
CAGCTGAACGAGGGAT	ref_5880_new	4	6	9	7	4	9	6	10	4	11
CGTTAGATTACGCAAG	ref_5880_new	84	47	118	108	53	90	56	76	62	95
TGGGCAAATCGGTCTT	ref_5880_new	7	2	8	10	2	10	3	6	3	6
CTTTGCTATTCTATTA	ref_5880_new	19	40	35	25	30	27	34	19	31	26
TCTACGTTTTACACCC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CAGCTACACTAATCAG	ref_5880_new	12	16	16	13	9	17	12	10	12	11
TACGGAGGTAAACTTC	ref_5880_new	43	23	38	35	25	33	20	39	24	41
TATGTTTTACAGGGAT	ref_5880_new	171	93	246	189	100	182	97	186	121	150
ACTCGACAGCCTATTC	ref_5880_new	5	4	17	14	6	7	6	10	6	9
GACTTCCGTGTGAGTC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CGATGTGTATCTGGTC	ref_5880_new	30	11	40	26	21	29	11	35	19	30
GCATCGTACTGACTGG	ref_5880_new	28	24	48	33	29	32	19	46	31	40
AGTAAGGAGGCCCCGC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
ACCAGGTTACGACTAT	ref_5880_new	0	0	0	0	0	0	0	0	0	0
GGCTGCTTGTACCTGG	ref_5880_new	0	0	0	0	0	0	0	0	0	0
AGTGAAAAGTAGGATT	ref_5880_new	22	13	40	30	16	26	12	21	19	23
GGCCGTAGTACAGATG	ref_5880_new	108	51	97	103	36	75	54	91	41	77
TTGTTGGGCCACGGTC	ref_5880_new	96	53	115	120	54	98	70	107	75	104
GGTCAGTCACTTAAAA	ref_5880_new	76	48	96	102	41	84	49	75	39	82
GGATGGAAAGTAAAGA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
GTTTGTTACTGAGTTA	ref_5880_new	5	3	9	5	3	3	3	5	5	6
AATCCTGCCTTCTCGC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
GTAAAGCTGCCAGCAA	ref_5880_new	100	45	97	103	55	92	57	108	61	89
ATGATTTGCCTCTTTA	ref_5880_new	35	20	32	42	34	39	17	48	22	22
GGCAACGTCTCGGTCA	ref_5880_new	44	30	56	48	38	58	31	38	26	36
CCCACACAGCATATGA	ref_5880_new	176	121	239	206	106	164	106	163	99	176
AAATGAACGTAGGCTA	ref_5880_new	28	21	41	31	8	44	16	31	21	34
CTCTTGCCTGCTTTTT	ref_5880_new	5	4	3	3	2	2	0	2	2	6
TCGGTTCCGGCGCAAG	ref_5880_new	58	37	84	50	34	53	42	52	38	38
AGTTTTCGCTTTAGAT	ref_5880_new	23	6	29	32	12	22	16	17	17	18
CGGGTCGTTCACTCAA	ref_5880_new	16	30	16	30	42	4	36	13	54	13
CCCATCGACGTGTGTA	ref_5880_new	14	17	22	18	13	19	8	17	17	13
TCCTATTCCTATGATA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
AGTGAGGCCTAAAAAT	ref_5880_new	41	16	73	47	23	36	27	30	30	46
GTGTCACAGCACATTC	ref_5880_new	94	50	95	80	59	83	54	98	62	79
CCGCACAACACGTCCT	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CGGCCCGATATTCGCT	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TTTGTCGGAGTTCGCG	ref_5880_new	13	7	15	5	2	11	12	7	5	7
CTCGAGCGGTTTAGTG	ref_5880_new	0	0	0	0	0	0	0	0	0	0
AGGCATCATCACGTAC	alt_5880_new	339	287	387	388	304	292	326	296	289	279
TCAGTGTTGATAGACG	ref_5880_new	24	14	33	24	23	28	23	21	22	18
GTCAGCCGGTCCAGTC	ref_5880_new	15	11	19	24	10	27	14	30	19	21
TTTGCGCGTAAATCAC	ref_5880_new	44	30	41	33	18	41	21	33	22	44
ATGGCCGCTATTAATG	ref_5880_new	183	119	219	172	96	192	114	164	89	176
ATTAACGGTCGTTGTA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TGTGTGCAAATGCTTA	ref_5880_new	99	56	101	92	48	70	44	92	67	62
AACCTCCGTGTGCTCA	ref_5880_new	37	15	42	37	22	29	18	28	27	33
CATAACACTATGGGGT	ref_5880_new	20	3	11	7	0	9	10	10	11	10
AAAATCTAAAAGCATA	alt_5880_new	52	28	52	55	30	39	30	49	24	40
ACGTTATAACCGTGCT	ref_5880_new	166	113	175	169	90	140	97	163	97	133
GAGAGCTACCATGTAA	ref_5880_new	36	29	48	37	38	30	24	41	30	35
TCGCGCCGATTTTTTT	ref_5880_new	0	0	0	0	0	0	0	0	0	0
ATGCTCGCCTTCGTTC	ref_5880_new	133	96	160	169	87	140	95	135	73	151
CGGGTACTCCGTGTGT	ref_5880_new	27	22	39	23	27	42	12	26	28	17
GTATCAATGGTCTCAT	ref_5880_new	16	16	23	29	21	14	13	24	11	17
GATGTGCCAGACAGCA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TGTGCACACAGTAGAA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TGGTCCGAGTGTTCTC	ref_5880_new	75	50	79	88	63	69	62	91	65	82
CATGTCACCTGCGTGT	ref_5880_new	157	112	174	199	127	141	132	150	114	122
TTTTTGAAGGTGCGTC	ref_5880_new	184	121	229	187	97	164	129	149	119	158
TCTGCGTGCTTTATGT	ref_5880_new	4	1	14	6	3	7	4	6	2	9
CACTATAAAGACAATA	ref_5880_new	19	10	15	27	12	19	20	19	13	23
TTTTAGCAGTCTTTTT	ref_5880_new	438	182	533	477	186	451	200	454	195	378
GGGGGCGCCCTTAACC	ref_5880_new	27	13	42	35	7	21	18	30	16	28
ATGGACTCTTTCCGGT	ref_5880_new	191	88	249	188	116	182	101	195	92	155
TGGTGCGCTTGTATAC	ref_5880_new	10	8	6	6	1	11	5	13	2	9
CAGCGTTACATCGTGT	ref_5880_new	14	13	16	28	10	14	25	25	16	19
ACATGGCTTCAGTTAT	ref_5880_new	13	13	26	17	3	22	6	15	15	22
AATCTTTTTCCTTGCG	ref_5880_new	71	23	64	40	34	53	32	49	37	44
AGGTGTGGTATACAGT	ref_5880_new	193	121	279	259	148	210	136	201	138	201
AACATCAACGCCACAT	ref_5880_new	0	0	0	0	0	0	0	0	0	0
GTAATCTACACTAAGT	ref_5880_new	13	8	19	13	10	12	7	14	10	10
GGCATCCTTTGCGCAC	ref_5880_new	137	82	195	181	87	139	98	153	113	134
TATTTTTTACAGGGAT	ref_5880_new	0	0	1	0	0	0	0	0	0	0
CCCTTCCATGACACCA	ref_5880_new	92	50	104	115	44	90	67	84	69	71
TTGGGGCAACCTGGTT	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CCATTCCAGCGTGAAC	ref_5880_new	32	26	39	36	36	36	37	42	37	21
CTGTCTTACATAGTTG	ref_5880_new	62	53	82	57	55	59	51	72	48	53
GTACTGGTCCGGGATT	ref_5880_new	27	20	41	27	8	32	11	24	19	22
TTTAATCCCTCCTAAT	ref_5880_new	55	21	50	37	12	33	18	50	23	47
GGTTCACTTCTGTTGT	ref_5880_new	90	39	103	85	40	84	53	88	47	84
TATCAGGCAATATCGT	ref_5880_new	31	20	24	23	16	21	12	16	12	24
CGACAGTGCTAATGCA	ref_5880_new	96	69	109	106	56	91	57	92	71	92
CTGCCAGAAGCTACAA	ref_5880_new	318	160	357	350	212	333	166	335	181	265
CAGCTCTGACCTTATA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
GTTGAGGGAGACCGAA	ref_5880_new	116	61	139	91	50	90	39	83	46	79
TCATCCCTCCTGATCA	ref_5880_new	77	46	78	51	50	55	43	67	50	53
TGGAATATCAATCAAA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TTCTGGTTTTCAATTT	ref_5880_new	131	44	131	111	87	109	77	112	61	105
CGAAAAGGTAAGGGCT	ref_5880_new	47	16	69	35	24	31	33	54	31	41
AATGGTATTACGCCAC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TGATCTCTACTGCCAC	ref_5880_new	100	56	99	100	66	90	72	92	46	78
ACTATTTTAGTTTCCT	ref_5880_new	44	16	45	33	28	33	27	22	28	27
GGTTTGCTAAGCCCAC	ref_5880_new	72	41	96	59	31	50	21	68	24	57
CTGACTTGCATTGCTG	ref_5880_new	26	7	34	43	23	26	24	24	16	23
CGAATAATGGGTTTTT	ref_5880_new	101	69	148	135	87	112	72	115	65	100
TGCAACCCAACAAGCT	ref_5880_new	160	71	171	167	100	119	75	139	90	148
CGTTCTTAATTCAAGA	ref_5880_new	10	6	6	8	9	7	9	5	8	9
CATCCAGTCACTGTCT	ref_5880_new	12	18	26	22	8	20	7	12	9	19
GGATGATCTATAAACA	ref_5880_new	113	56	129	150	57	120	65	111	64	98
TCGCCGTGGTCCGCAT	ref_5880_new	39	6	45	25	19	17	17	26	28	26
AGTTGAATGCAGGACT	ref_5880_new	51	25	59	54	31	56	33	47	25	49
TGGCAATGAATGTCCG	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TCCGCCGGGGACAAAG	ref_5880_new	67	35	86	80	53	85	39	70	53	69
CAGCTCCAGTGTGTTG	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CCCTACATAGCCGGTC	ref_5880_new	91	43	103	62	48	77	41	73	57	61
GACTTAACGGATTTTA	ref_5880_new	97	36	107	105	51	102	48	79	43	68
CATAATCATCCCCTGT	ref_5880_new	24	14	30	24	18	9	19	18	11	15
TTTGTTCAATAGTTTT	alt_5880_new	69	61	103	65	56	73	46	83	66	71
GGCGATCTCTGGGGCG	ref_5880_new	36	36	75	57	48	43	43	59	39	79
AAGACGATGGCTATGT	ref_5880_new	416	224	534	425	220	429	238	413	206	365
GATACAGCGATGGCCG	ref_5880_new	104	41	120	107	56	125	47	119	64	107
TTCCTGGGTCCCCTAC	ref_5880_new	46	31	58	49	22	30	31	22	15	26
CACCCCAAATAGAACT	ref_5880_new	38	26	39	36	28	24	25	31	30	33
TAGATGAGCACCCCCA	alt_5880_new	67	38	94	72	37	73	42	57	49	60
GGGGATGGGTCCGAGA	ref_5880_new	27	10	21	19	22	23	11	12	8	11
GCGAAATTTAGGCCAT	ref_5880_new	49	27	43	47	23	40	25	39	26	27
GAGAGGAAGTTAATCC	ref_5880_new	3	1	6	3	2	6	3	5	3	7
TATATGCGAAGCCAGT	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CACGTCTCGGTGGTTT	ref_5880_new	27	36	33	38	21	23	41	28	24	15
TATGAGCAATGACTTT	ref_5880_new	100	59	146	99	50	123	66	95	70	105
CGCACAGCAACATGTA	ref_5880_new	48	26	89	77	33	53	33	51	47	74
ACCTACGGATGAGATG	ref_5880_new	28	16	29	31	13	27	21	32	23	29
TACGCTACAGATGAAA	ref_5880_new	30	13	32	24	10	17	10	20	14	23
TTTGTTGACCTCTGGC	ref_5880_new	18	8	24	27	10	16	11	21	18	15
GAACATTCGGGAGTTC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TGCTTAAGACTACTCC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CTTTCCGTTAAGACGC	ref_5880_new	42	24	51	53	19	42	37	39	24	34
GACTATGGCCGCACCG	ref_5880_new	105	50	119	110	56	128	30	95	52	94
AATATCAACTCGGTCG	ref_5880_new	48	21	45	45	23	49	24	52	28	50
ATAAAACTTTGGTGTC	ref_5880_new	13	4	22	13	10	13	8	10	16	16
ATTTTCGAAACTAATC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CACGGGTAATTATGAA	ref_5880_new	20	20	27	29	10	20	10	25	11	9
CAACAGGATTAGAGCC	ref_5880_new	167	109	262	192	101	190	104	185	99	153
CGTCCTCGCTCACACT	ref_5880_new	31	11	42	21	19	31	20	36	14	30
TTACTATTTGATTGAG	ref_5880_new	148	95	173	190	90	137	104	137	95	133
GCGGCATCATGGGTTT	ref_5880_new	40	13	57	42	15	36	31	41	23	48
AGTAGAGGAACCAACA	ref_5880_new	7	9	11	6	3	14	2	17	7	8
TTTAGCACTGTACTCC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
GATCTTAGTTATTCCT	ref_5880_new	21	6	25	15	8	14	5	21	13	24
TCGTCCAGGGCGCTGC	ref_5880_new	171	101	192	177	108	149	122	164	96	148
GGACAGAGTATGTGGA	ref_5880_new	23	12	37	29	4	23	20	22	11	26
CATGTCCTCTGAACAG	ref_5880_new	0	0	0	0	0	0	0	0	0	0
TGGGAGTTTGTGTGGC	ref_5880_new	194	84	227	194	109	188	147	201	109	177
GCATTAATACCGGTCT	ref_5880_new	132	61	146	137	69	104	70	103	68	109
AGGGGGTCCCCGTAAA	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CGTTCTACCGTGCGTC	ref_5880_new	29	45	60	35	39	52	44	35	39	32
ATAGGTCCCTGAAGTA	ref_5880_new	71	61	100	78	34	62	47	76	51	64
CCCTTCGTATCTCACT	ref_5880_new	235	89	250	194	107	185	89	204	105	186
GTCCTTACAATATTGC	ref_5880_new	0	0	0	0	0	0	0	0	0	0
CAGTCTCCTAACGCAC	ref_5880_new	76	40	80	71	67	75	66	70	66	81
CGTTCCCGGCCTCGGT	ref_5880_new	78	63	74	68	55	55	41	74	44	79
TCGTGGCTCCTGCCGG	alt_3143_reverse	40	24	59	36	30	29	29	38	28	36
CTGCATCTCCTAGCTG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TAGAATTTAGGCTTGC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTTATGCTATCCGCGT	alt_3143_reverse	37	26	34	42	34	30	33	23	32	35
CAGAATCGAGATATCG	alt_3143_reverse	50	62	68	54	54	48	67	68	79	55
CCTTTACCCATATTTT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCCACACGCCTAAATT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGTCTTCCCCTTC	alt_3143_reverse	0	1	0	1	3	0	6	0	0	3
GCGGTTTCGAGGGGCG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTTCTACCTTGGG	alt_3143_reverse	16	21	27	27	27	29	25	31	22	30
CTCTAGGCAAAACGCA	alt_3143_reverse	6	12	11	17	7	6	18	15	6	3
GATCCATTTTAGCGCA	alt_3143_reverse	7	16	21	20	15	3	20	9	18	11
GTCGGCCATTGGACAC	alt_3143_reverse	8	9	17	8	19	4	10	7	19	8
CCTCAGGGTTGGTTAC	alt_3143_reverse	77	78	106	81	75	73	85	84	68	70
GTGATGGCCTCGTGGC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGAGGCAACTCTC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GGACTAGCAACTACTT	alt_3143_reverse	5	11	10	15	13	15	11	10	10	12
ATTTAATAATACGGGG	alt_3143_reverse	10	5	18	13	6	10	11	20	8	14
AAGCCGGCAAGATTGT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCCTCCGCTCCAT	alt_3143_reverse	25	34	38	39	33	30	49	38	47	28
TTCCTTCTACGGAGGG	ref_3143_reverse	3	5	6	7	5	5	10	5	4	4
TCTTTCAAGGACTGGA	alt_3143_reverse	3	7	11	3	6	4	5	4	4	1
TAACTGTGCACATAAT	alt_3143_reverse	23	34	28	18	17	18	24	34	17	27
ACCTTTTCGGAGAAGC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTACTGAGGCCTG	alt_3143_reverse	9	9	16	14	7	9	8	9	4	13
GTCACTTCTCTGGAAG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGTCAACACATTCTCT	alt_3143_reverse	10	6	11	8	12	12	6	6	13	2
AAACAGGGCCTTCTCC	alt_3143_reverse	21	28	27	28	24	25	18	28	24	20
TTTCCAAGACTTTTTT	alt_3143_reverse	22	14	23	18	23	14	17	16	22	13
GGACTGAATAGCTATT	alt_3143_reverse	128	130	145	142	126	119	149	95	152	100
CGCTCTTTTTAGTGTC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTAGTGGCAATTA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTTTTTTCATCAT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTACGGCTTTGTG	alt_3143_reverse	21	25	21	23	22	16	39	16	24	19
TCTCGCTTACCTGTAC	alt_3143_reverse	14	51	23	17	64	11	60	15	50	16
GCCCCTCGCTAGCGTG	alt_3143_reverse	222	194	249	217	209	207	205	209	224	195
AGGGGCGTTTGATCGG	alt_3143_reverse	115	93	120	103	90	102	96	62	90	72
TACTTATTGTTCGAGG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTAAAGATGTCC	alt_3143_reverse	93	85	142	142	75	137	109	126	80	121
GATTCGGTCACATTCA	alt_3143_reverse	1	0	4	3	2	1	1	2	5	5
AGCATTAGGGCTCTTA	alt_3143_reverse	39	24	31	22	32	15	32	20	32	28
ATGTTTGTATACTCCG	alt_3143_reverse	38	48	44	43	46	29	47	26	49	32
AGGTGCTCAGTAGCCC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCGAACGGGTCTT	alt_3143_reverse	15	57	21	30	72	17	84	22	77	15
GTCTCTTTATGCTTTT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CCTCATCATTCATAAT	alt_3143_reverse	138	137	185	149	135	141	138	141	135	126
TGTATCCCATTGGCAC	alt_3143_reverse	4	4	1	3	4	2	4	2	1	1
TCTAACTCTGATTCAG	alt_3143_reverse	30	28	37	25	15	25	18	15	17	19
TTCATCCACAAGAAAC	alt_3143_reverse	14	4	8	8	9	8	8	8	9	6
CATGAACCTCTCACGG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTATTTTCCAGTC	alt_3143_reverse	16	12	36	19	17	20	18	29	29	14
TTTTGTCATGTAAATG	alt_3143_reverse	17	22	17	17	20	13	12	12	18	18
TATCCCCTTTTGGAAG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TATGGCAAAGAATTTG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTACCCCCTGCTCTTC	alt_3143_reverse	11	18	15	8	23	9	19	5	15	8
TTGCAACTGCTTCTTT	alt_3143_reverse	3	6	7	1	7	5	6	4	3	4
TAATCGTTACCTCTTA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CCGATTCGTAGGTGTT	ref_3143_reverse	37	55	61	38	45	41	47	60	46	37
TGTTTAAACTCGTGGT	alt_3143_reverse	7	5	14	7	10	0	3	1	8	9
CAGTCGCCGCCTTCTG	alt_3143_reverse	74	81	78	87	82	73	76	66	102	62
AATTACCTCCGGGCCT	alt_3143_reverse	1	4	5	5	6	1	5	3	10	4
GCACTCTGGGGACTTG	alt_3143_reverse	34	30	42	33	18	36	27	15	21	17
GCCCGAGTAGCTCAGT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGAACATGATTTTGCA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
AAGGGACCGTAGGGGT	alt_3143_reverse	18	8	14	22	13	16	13	10	9	14
GTCATTGACGGATATA	alt_3143_reverse	13	14	8	15	17	14	15	8	14	5
GAGCCAAAGCGCCTTC	alt_3143_reverse	9	14	23	15	19	17	24	15	16	10
TTAGGACTTGGTATGT	alt_3143_reverse	7	14	11	17	11	12	18	8	13	11
TAATTGCAATTAACGT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCCCAAACGTATC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTCAATGTTCTCG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCATTTTGTGAAGAAT	alt_3143_reverse	8	8	15	13	9	11	9	13	10	4
GGTGGGGATCGCCAAG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGATTTTGTCCCTCTA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTGAAGCGTGCTC	alt_3143_reverse	9	7	13	9	1	6	10	4	4	12
GCCCTGCATCAGCCTG	alt_3143_reverse	91	105	119	105	94	85	106	102	100	99
CTTTAAGGATCGACGT	alt_3143_reverse	7	4	2	6	4	5	6	1	3	1
GTGAGTTGGGATGAAC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTAGACTAAACGT	ref_3143_reverse	127	127	141	91	141	113	144	117	136	103
TCACGAGAGTCCTTGC	alt_3143_reverse	0	0	1	2	2	2	1	1	1	0
GTATCGTTTTTTTCTA	alt_3143_reverse	10	19	15	12	24	11	12	13	42	14
ACTTGCAGAAATATGT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTGTGTTGTCACA	alt_3143_reverse	46	51	38	43	27	44	49	37	47	28
TTCTGGATTCTTCTAA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CATTATGCTGTCTCTT	alt_3143_reverse	5	6	11	14	9	9	8	4	8	7
AGCTTTGCGACGTATG	alt_3143_reverse	63	49	93	62	55	72	80	52	81	69
GAATGCTTCGGCTAAG	alt_3143_reverse	116	113	135	126	121	118	135	92	129	96
AGTTTTTATCTAAGCG	alt_3143_reverse	6	3	3	5	7	6	4	6	3	9
GCTCATGACACGTTCA	alt_3143_reverse	17	12	14	14	9	12	2	11	9	9
CTTGTAAATAAACTAT	alt_3143_reverse	19	14	20	19	18	12	14	12	11	17
TTCCCCAGAATTGGAA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GGCGGGTTAAAAGGCC	alt_3143_reverse	29	27	31	28	26	27	21	41	36	35
ACGGGTTCGTGCCCCA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
AGTAAGTTCACCATCT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TAACTTTTTTATGGGC	alt_3143_reverse	212	164	200	178	174	173	182	181	219	161
GACGTCTCCGAATTAG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGATACCGTACTC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
ATATTTTTCACCATGG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTTGAATCCGTTGTAT	alt_3143_reverse	83	93	78	79	94	76	97	57	94	64
TTCTGTCGCTTCCGGT	alt_3143_reverse	100	109	128	95	114	94	127	100	138	64
TCTAATGTCACATGGG	alt_3143_reverse	2	3	4	1	2	4	5	1	1	4
CCGACCTCGAAAGCGG	alt_3143_reverse	95	141	150	104	113	101	136	91	137	77
ACTTCTTCTAGGTTCA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CTTCATTACCGCATGC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCGGTTATAGAC	alt_3143_reverse	6	8	11	9	16	11	5	6	6	3
GCCTTATCATATGACG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCGGTGGGGTGCC	alt_3143_reverse	1	4	3	0	8	1	0	2	2	2
CATTCTCAGTGTCTGG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGGACCGTGGATAATA	alt_3143_reverse	49	48	81	45	36	51	54	56	43	44
TGATAGCGTTTCTCCA	alt_3143_reverse	44	30	79	53	34	48	44	41	38	37
GCACATTCTGTTATTG	alt_3143_reverse	6	13	10	16	5	11	13	8	14	4
AGGTCAGGATGCAGTT	alt_3143_reverse	17	29	26	25	39	31	41	26	31	16
AAGTATACCCAGGATT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCTAAATTATTTTGCG	alt_3143_reverse	41	43	49	50	38	37	43	37	51	40
AAGCTCGGGTTAGTCT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
ACGAAATGTTAGCTAT	alt_3143_reverse	15	11	25	19	13	25	17	20	17	11
TTCATTCTATTTTCAG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGCTGATAGGGTG	alt_3143_reverse	48	51	48	57	44	39	51	48	62	44
GACTTGTCCGAATCCA	alt_3143_reverse	65	55	63	71	63	57	75	51	63	54
TTCATCTAAAATAGGA	alt_3143_reverse	20	34	36	37	25	34	36	39	33	30
AATACCACCGGAGTAA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTTATTGCAGTGC	alt_3143_reverse	9	14	17	9	6	11	12	6	12	6
ACCCCTGTACCCTACT	alt_3143_reverse	13	17	10	8	5	8	12	11	15	11
GTGTATCTAGGGGCCC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTTATCTTGCACGATA	alt_3143_reverse	51	37	50	64	40	41	38	39	53	34
GTTCGGGTATAGCGCT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTGATATCAAAG	alt_3143_reverse	46	40	58	56	37	39	62	34	37	35
ATTCGTTAGACGACCC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGACACCACCCGT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGCCAATGTATCTCCG	alt_3143_reverse	7	13	19	3	11	4	16	10	14	8
TGCCGTCTATCGTTGA	alt_3143_reverse	6	11	3	6	5	3	14	3	12	2
ACTCTTGTAGCACTAA	alt_3143_reverse	2	3	2	1	4	3	4	2	11	0
GAGAGGAAATGCCATC	alt_3143_reverse	16	20	30	24	24	21	19	18	25	20
TTATGGGATGTACCTG	alt_3143_reverse	18	40	20	21	27	31	36	21	30	24
GAATGGCTCTTAAATC	alt_3143_reverse	19	21	35	20	26	25	23	23	26	24
TTAGTGTGTCTAGACG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
ACGACCAAGTATTCTG	alt_3143_reverse	16	22	34	19	20	26	14	13	32	27
TGTGTACCCCATCGTA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTGTATGATCTAGTTC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTAAAATTCGCCT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTACTGGCGCTCGCAT	alt_3143_reverse	25	17	11	12	14	16	23	20	15	14
GCATCACGCACTGTTT	alt_3143_reverse	68	55	76	82	55	58	77	63	63	54
GACTAAATGAATTCCG	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGAATCCGTTAAC	alt_3143_reverse	11	4	9	7	2	14	5	10	3	7
GAAGCGAGAAATTATC	alt_3143_reverse	1	1	5	6	2	2	2	3	2	4
ATTTTACCTTTTCGCA	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCATGTGTGCGTTACC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTTTTTATAGGCG	alt_3143_reverse	94	80	127	92	105	88	103	102	113	103
TGTCTCATGCACGTCT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
ATGTACTTCTGTGCGT	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAACGATGGTAAT	alt_3143_reverse	12	20	19	9	17	9	18	11	9	7
CACCGGGCTATTCCTT	alt_3143_reverse	0	27	3	9	15	4	13	5	12	5
AGGTCTTTTTCGACGG	alt_3143_reverse	25	26	22	27	13	25	12	19	30	23
AGGCGCACGTATTGTT	alt_3143_reverse	165	183	167	149	158	155	193	164	176	172
TTAGTTCCGTAGAATC	alt_3143_reverse	33	25	36	28	31	32	29	33	35	26
GTTGGTATAGGGTGTT	alt_3143_reverse	32	16	25	28	23	22	21	28	23	17
CTGCACACAGACATGC	alt_3143_reverse	23	21	39	31	33	13	28	28	37	11
TCGTTCCCCATGATTC	alt_3143_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCCGGGGATTCTT	alt_3143_reverse	126	119	149	136	114	145	152	129	170	113
GACGATCGTTTTCACC	alt_541_negative	35	58	36	25	52	25	66	30	51	32
TTCATAGGCTGCAGTG	alt_541_negative	23	63	44	33	38	27	50	15	52	23
TTGATTATTATCATGT	alt_541_negative	73	90	72	69	91	72	76	60	73	70
TTTTGAGGGTACTGCG	alt_541_negative	108	142	128	100	155	76	136	89	133	102
AACAACGCGGGTGGAA	alt_541_negative	0	0	0	0	0	0	0	0	0	0
CAACAGCGTCGAGCCT	alt_541_negative	45	76	50	44	75	48	52	39	53	39
AGCTCCTACTACATTC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
CGTCCGACCCGCTGAA	alt_541_negative	29	40	47	24	37	38	39	36	45	30
TCACGTTCTGCGCGTT	alt_541_negative	0	9	3	3	4	0	8	1	6	4
CCGTCCCGATCAGGCC	alt_541_negative	83	126	92	61	146	74	165	62	194	59
CCAAGGATTGTTCATT	alt_541_negative	24	32	26	14	26	12	30	16	38	24
ATTAACGGGTACTTGC	alt_541_negative	75	94	87	64	108	69	105	66	98	66
GGATGCGCCGGCGAAC	ref_541_negative	19	22	24	17	25	17	23	17	21	16
CAAATCTGCTAAATGG	alt_541_negative	22	23	21	19	15	20	25	19	27	18
GTAAACGGTCATGCAC	alt_541_negative	53	62	55	73	77	52	77	41	64	58
CCGTTTCTAATTCTGT	alt_541_negative	190	176	258	180	224	194	219	164	260	180
CAAGAGGGATAATGCA	alt_541_negative	82	90	104	86	99	78	109	79	113	81
TATTGTAAAATTGTAT	alt_541_negative	28	53	25	26	40	34	42	32	44	33
TTCTCGGAGAATGCTT	alt_541_negative	20	20	32	27	19	10	14	14	25	15
TTAGCATCTTCAGTCA	alt_541_negative	55	71	57	54	86	54	57	39	73	54
GGCGATGCCGATTAAT	alt_541_negative	84	117	113	77	97	101	98	86	122	81
AGTTTATGCGTTGACT	alt_541_negative	6	9	10	4	17	11	10	4	13	5
TGTAGGAGTGCCCGGG	alt_541_negative	63	78	78	56	88	67	98	58	95	59
GCGAATTGCACTTACG	alt_541_negative	18	32	15	29	31	22	31	24	33	15
GCTCCTGAAAAAGTAT	alt_541_negative	16	29	20	24	33	15	38	28	29	23
ACTTATATTGGCTTAA	alt_541_negative	13	15	15	12	16	8	12	14	20	15
AGTACCGATCCCAGTC	alt_541_negative	3	6	5	5	13	2	15	7	15	4
GTTGTGATCTAAGGTC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
TTTCTAGCTTGATCGG	alt_541_negative	6	8	9	7	12	3	4	4	2	5
CTGCTGATGACGTCAG	alt_541_negative	62	76	78	64	65	65	69	60	88	75
TCGTGACAGCATATGT	alt_541_negative	45	68	47	52	69	47	74	50	64	41
ATGGTACGTTCCGGAT	alt_541_negative	23	37	40	23	21	18	43	27	39	23
TTAAACAATATAGAAA	alt_541_negative	0	0	0	0	0	0	0	0	0	0
GATCGCGTTGGCCAGC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
TTTGGTCATACTTAAT	alt_541_negative	0	0	0	0	0	0	0	0	0	0
AGTCATATAATCGTTG	alt_541_negative	3	3	2	5	6	4	6	1	5	5
ACAGCAGCTCTCCTAG	alt_541_negative	37	52	29	34	45	39	46	23	58	24
TGCCTTGCGTATGTCA	alt_541_negative	5	3	4	5	4	2	10	7	7	4
CAATACGGGAATCTTA	alt_541_negative	19	21	22	12	24	18	19	19	26	7
GTCAGTAAAATCGTCG	alt_541_negative	29	42	43	34	43	28	46	38	60	29
CCAGACCCTCTGGTAT	alt_541_negative	2	1	1	1	3	0	4	0	1	1
GTTAACTACACGAATT	alt_541_negative	113	125	157	106	162	120	144	99	129	106
CATCATTAAGGCTCGA	alt_541_negative	41	55	43	56	32	46	45	60	58	46
TTAATGTACTGTTTTC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
AGAAATATTTGCGCGC	alt_541_negative	16	21	13	20	23	12	15	11	23	11
GCCACGTCAGAGTAGT	alt_541_negative	2	7	4	0	2	3	8	3	5	9
GCGCGAGTCGAGGCTT	alt_541_negative	52	63	85	55	53	51	75	54	83	59
TTCATCTGCTTCATTC	alt_541_negative	28	52	44	32	43	22	60	23	45	31
TCAGGACCCCCTAGAA	alt_541_negative	0	0	0	0	0	0	0	0	0	0
CGGTGTATAACTCTCT	alt_541_negative	44	52	54	37	56	40	57	35	49	36
CTCGTCCATGGTCCGC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
CAAACAGTCGGATCAA	alt_541_negative	44	61	28	24	67	39	53	42	74	38
GTCACTCGGCATTAAA	alt_541_negative	0	0	0	0	0	0	0	0	0	0
CCTAATTAATCTTCAA	alt_541_negative	3	12	5	7	10	1	10	3	11	3
CCCGTCCTTCGATGAG	alt_541_negative	25	73	29	27	61	34	73	38	69	22
AGCACACATGAATAGT	alt_541_negative	52	73	58	56	89	42	74	40	65	39
GTTAGTGAGCACTGTT	alt_541_negative	8	5	10	18	11	13	13	11	23	6
TCCGCATAGCCTTGCT	alt_541_negative	0	0	1	2	0	2	1	1	0	1
TCTGTTAGAGCTTATA	ref_541_negative	97	117	119	98	126	105	148	69	142	79
GTTTAATCGCCTCAGG	alt_541_negative	38	46	43	30	44	44	43	29	41	26
GACCGAGCACGCTAAA	alt_541_negative	6	6	9	6	11	9	5	7	4	8
CAAAAGCGGGAACACT	alt_541_negative	0	0	0	0	0	0	0	0	0	0
TGCCTTGCGTATGTCT	alt_541_negative	0	0	0	0	0	0	0	0	0	0
ATCGCAACAACTAATG	alt_541_negative	111	157	125	102	160	126	154	118	169	97
TACTGGTTTCGTCTAC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
ACGCTCTTTGATCCTT	alt_541_negative	53	69	53	68	60	64	55	44	78	40
TTAACCTAAGAATGAC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
AGCCGTTATTGGCAAT	alt_541_negative	0	0	0	0	0	0	0	0	0	0
ACTGATACATTCCCTT	alt_541_negative	27	33	39	23	37	35	36	20	41	30
CACGTTCTCACGGCCG	alt_541_negative	0	0	0	0	0	0	0	0	0	0
TATACGGGTTTTCGTT	alt_541_negative	6	6	13	6	6	5	9	11	25	5
GCGGTATGCCGCCACA	alt_541_negative	7	18	14	19	12	7	14	21	17	14
CCCGGGCTTAAACTGG	alt_541_negative	47	78	38	51	134	31	80	36	84	50
TACAGAGTTGCTGGTC	alt_541_negative	32	53	37	46	38	28	43	38	41	41
ACCTTTCCTATGAACG	alt_541_negative	1	1	0	1	4	2	1	1	3	0
GTCCCTGATGTCTCCA	alt_541_negative	6	2	3	8	2	5	5	7	10	2
ATCCCCGCGATCGCTA	alt_541_negative	0	0	0	0	0	0	0	0	0	0
CTTATAAGTTGTCCCT	alt_541_negative	12	20	8	10	10	6	18	11	15	7
GAATTTATAGTCTTAC	alt_541_negative	3	2	4	2	0	5	1	2	1	2
ACCTGTACCTCTTTGC	alt_541_negative	4	6	6	5	7	8	8	11	12	1
CACGCGTTCACAGCGG	alt_541_negative	6	11	9	11	15	10	13	6	9	7
CAATAGGCGCAATTTT	alt_541_negative	0	0	0	0	0	0	0	0	0	0
CATATTGGTATACCGC	alt_541_negative	20	25	24	21	31	10	42	18	28	10
GAATTACAGTTTCTTG	alt_541_negative	0	0	0	0	0	0	0	0	0	0
GGAGTAAACACAGGGC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
ATGATTCAGGTTTTAG	alt_541_negative	0	0	0	0	0	0	0	0	0	0
GCCCTCTATTACACAA	alt_541_negative	0	0	0	0	0	0	0	0	0	0
TTCGAGGTATCCGTAC	alt_541_negative	0	0	0	0	0	0	0	0	0	0
TATTAACTTGGCGGTA	alt_541_negative	1	4	1	1	2	0	2	1	0	1
ATCGTTTCTCTATCGT	alt_541_negative	0	0	0	0	0	0	0	0	0	0
TGATCTCCCTGCACCT	alt_541_negative	31	40	22	30	31	31	30	23	41	28
CTGCGGCCCTGCAGCC	alt_541_negative	84	108	110	104	122	105	117	85	116	79
AGGATTCCCACGTTCC	alt_541_negative	30	50	42	29	47	34	49	39	36	27
AGATAGACTTTTTTCT	alt_541_negative	6	8	19	8	19	11	11	2	7	3
TGGATTCTAACCCGCG	alt_541_negative	80	67	81	48	108	65	99	59	95	44
ATCCCCCGATCACTGC	alt_541_negative	9	18	13	9	20	11	22	11	8	13
AACAATCTTCCAGCTA	ref_306_upstream	6	8	4	2	4	4	3	2	6	8
CTCGATGATGGTTGTG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTTCGTGAACAAT	alt_306_upstream	42	45	48	42	35	53	52	46	45	33
CTGGCTCTCACCCCTG	ref_306_upstream	18	13	21	20	19	21	21	18	21	22
CAGAGTTCTACGGCGC	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GATGGCTAGGACGTTT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTATCAAGTCTAC	ref_306_upstream	9	8	7	3	4	3	7	4	5	8
CAGGACACCGCTTGCC	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
AACGTTGGTGGAAGTA	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTGTGCATCTAGG	ref_306_upstream	13	73	26	15	59	18	59	17	84	19
GCACTGCGAGAGCTCG	ref_306_upstream	107	95	111	131	93	78	113	84	121	98
TATCCTTTCTATCATT	ref_306_upstream	106	75	113	93	81	89	78	95	81	98
AGCTTCCTTCTTAGAC	ref_306_upstream	12	19	9	8	16	14	12	14	20	11
GTTATAGTCGAGTCCG	ref_306_upstream	31	20	30	35	28	31	31	21	37	21
ACATGGACTTTTTTTG	ref_306_upstream	96	55	110	111	52	84	66	98	79	78
TATGGTAAAGGCAATG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
CGGCGACAAGGTCTTC	ref_306_upstream	8	18	12	15	9	8	18	12	17	11
ATGCTGTGGGATCAGT	ref_306_upstream	6	5	7	10	4	8	11	6	2	5
TTCAGTCCCTCCGGCA	ref_306_upstream	10	23	26	13	20	12	33	14	13	16
ATTCCCTTTTAGCTGA	ref_306_upstream	11	9	11	12	16	9	14	8	7	10
CAGATCCGTATACATA	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCAGTATCGAGTT	ref_306_upstream	2	0	1	1	1	2	0	1	2	3
GCTGAGTGTATAGAAG	ref_306_upstream	235	290	251	256	281	194	309	229	295	199
GGTAGTCCCGTATACC	ref_306_upstream	4	1	3	1	4	2	0	0	0	0
AAGATAGCTTGTCGGG	ref_306_upstream	25	26	34	34	37	18	25	21	24	25
TCTCTTTCAGCCGCCT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTTCCGGTGGGTG	ref_306_upstream	8	7	15	5	9	3	8	7	6	2
TACTGATCGTTAACAG	ref_306_upstream	8	10	22	13	14	12	9	17	9	7
ATTGTGCTCGACTCGT	ref_306_upstream	65	78	77	76	70	54	83	69	88	60
GGGAGCCCTGTATTAT	ref_306_upstream	134	107	142	132	133	108	130	109	136	95
AGCCCTACACATTCTA	ref_306_upstream	38	107	64	51	92	66	112	60	140	41
GTCTGATCTAAATGTG	ref_306_upstream	13	14	20	17	20	20	15	7	20	13
GCGCCTAGAACTCACG	ref_306_upstream	5	11	9	4	12	6	6	9	7	4
GCTTTACTTGAGAGGG	ref_306_upstream	26	34	47	34	36	32	42	34	28	23
CTGAAAGTAGAACACG	ref_306_upstream	20	17	27	16	31	26	30	21	25	16
ACGGTTCTTGTTCGGC	ref_306_upstream	20	21	29	17	24	13	25	12	19	17
TGTCACTATATGTTTT	ref_306_upstream	20	28	35	16	26	27	34	21	22	16
TGGCTCACGGCTACGA	ref_306_upstream	68	63	87	61	54	57	59	73	76	65
GACAGGCTATCAGTAA	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
AATAGAAGGCGTTTGC	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
AACAACTTGTACTTTG	ref_306_upstream	11	10	16	14	14	5	13	17	12	16
TAATGGAGCCGACAGC	ref_306_upstream	32	29	29	31	29	21	35	31	30	28
CAGTACATGATGCTAC	ref_306_upstream	0	1	2	1	0	2	1	2	1	0
AGCGCAGATGGTCATC	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
AATCCCTTTCAACATC	ref_306_upstream	17	31	18	19	13	13	11	14	19	17
CGAATGACATGCCCCA	ref_306_upstream	48	56	54	42	62	43	52	30	57	38
CTCCCGGCCTCCTGAT	ref_306_upstream	14	26	6	20	25	11	31	11	30	11
CATCAACGTCTACTAT	ref_306_upstream	13	28	21	7	25	12	18	16	35	19
CGGTTGTGCTCACTTG	ref_306_upstream	89	92	102	96	121	75	120	86	113	82
TCCTATATTGTAGCGT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGGAATACCCCTA	ref_306_upstream	3	5	5	11	7	6	6	7	12	2
GTGGGACTGATTCTAG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TATGGAGCTCTGTTCC	ref_306_upstream	14	6	15	16	7	14	16	11	15	7
AACAACCGCTTATTTA	ref_306_upstream	32	43	30	30	40	29	52	37	46	22
CTTGTAGCTATCCGTT	ref_306_upstream	0	6	0	1	10	3	5	4	2	2
ATGTGCTCCTCGGGTT	ref_306_upstream	32	37	37	32	23	33	39	34	33	26
CCCGATTAATCTCTAC	ref_306_upstream	7	3	3	6	3	1	9	3	6	3
TCCTTTTAATCAGTGG	ref_306_upstream	306	326	330	307	336	276	323	264	354	284
CCGATGTGGCATACCT	ref_306_upstream	13	26	25	19	30	17	17	18	25	19
GTTTGGCCGAGTGGCC	ref_306_upstream	9	20	8	7	7	8	9	7	12	7
TCTCGTTCGTATGTAA	ref_306_upstream	2	12	8	5	4	6	14	4	4	3
TTGCCAGGGATAGGAT	ref_306_upstream	4	9	12	11	5	9	14	8	7	8
TTGATCGATTGCCTTG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTTTACTAGCTT	ref_306_upstream	5	6	5	5	9	10	4	8	5	2
GAATGATATTTGCGCG	ref_306_upstream	15	12	24	21	17	20	25	15	17	14
TCATGACTCTCCACTT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GACGAGGTGTTGGTCC	ref_306_upstream	16	17	15	14	31	16	27	16	25	18
GTTAAGGCTACGCTAA	ref_306_upstream	24	26	37	33	40	24	37	24	41	30
GTATTGGAGAGCATGC	ref_306_upstream	94	70	95	70	73	75	97	77	90	92
GTCTGGGTAGGATTAC	ref_306_upstream	5	16	9	15	20	9	17	13	12	6
CCACGACGTCTCTAGA	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGTGTATTGCTTT	ref_306_upstream	40	37	43	45	45	35	51	33	57	31
GGTGCTTGATCCATTT	ref_306_upstream	82	102	92	98	98	91	96	68	91	79
TGGTGTTTCGCGTTCT	ref_306_upstream	21	38	28	29	30	27	34	28	37	25
TCCTACACCTTTAGCT	ref_306_upstream	7	17	10	7	13	9	11	13	11	7
GCCTGAGGGGGTCTGA	ref_306_upstream	58	65	67	66	57	50	61	59	68	53
TTCATGGTGATTCTGT	ref_306_upstream	23	44	39	26	53	34	40	31	56	23
ACAGACACGCACTGCG	ref_306_upstream	19	32	20	33	32	20	31	21	37	15
TTTCCAATGCATGTCT	ref_306_upstream	70	42	94	57	40	64	49	64	39	38
GCGTGCTATTGACAGC	ref_306_upstream	7	8	8	10	10	3	16	7	8	11
TTGGTTTAACTCTTAA	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TCTACAGGTAAATCAT	ref_306_upstream	17	28	19	12	22	7	33	6	29	16
ATTGCAAGTACTTGCT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
CTAACTATCGCGCTAC	ref_306_upstream	44	59	59	38	62	48	59	49	74	34
GGTCTGAATACTTGCT	ref_306_upstream	20	15	19	15	10	11	7	9	15	15
TCCTCGAATGTTTGTT	ref_306_upstream	70	73	101	77	61	69	77	85	94	52
TGCTGTCTGTTTGGAG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
CCCGAAGTTAGCGGCT	ref_306_upstream	11	38	6	11	17	9	29	6	22	9
GTAACCCGTTCGAGCA	ref_306_upstream	88	84	89	91	90	95	101	69	118	68
CAGCCCGCTCAAGGTA	ref_306_upstream	4	3	7	4	9	5	3	3	6	4
CATGTAACTGGCTGTC	ref_306_upstream	114	108	118	98	97	102	99	73	136	95
TGTGTTCAGGTGGGTG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTTATACTTGCTT	ref_306_upstream	75	90	79	58	85	72	90	40	85	51
GTTGTTAGATTTAGGT	ref_306_upstream	64	39	52	49	56	46	61	48	70	60
TTTGAGTAGTTCTAAA	ref_306_upstream	12	19	7	16	13	6	18	15	20	5
ACTGGGGTATATGCGT	ref_306_upstream	19	16	24	17	16	19	20	20	23	7
CACGCAAGCTTACGCA	ref_306_upstream	25	14	30	17	14	17	22	9	29	24
TCCCCGATAGAAACTG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGGACGCGCCTAT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TTTATATGCGGAGAGA	ref_306_upstream	30	23	33	14	31	21	20	21	35	22
GTCGCAGGCATGCTTG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGGTCGGTAGGGC	ref_306_upstream	48	52	42	53	51	38	41	46	52	27
TGGGTCCGTTGCCATG	ref_306_upstream	16	14	21	21	20	13	12	16	22	14
ACTGGTAAAACCTGGG	ref_306_upstream	17	46	33	23	39	25	60	34	59	31
CGCAGAACGCCGAGCC	alt_306_upstream	34	24	60	42	29	33	44	26	33	27
CATGGCTTGGCTTTCG	ref_306_upstream	63	63	53	68	69	50	70	61	69	52
CGGGCAGCAGCTACAA	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTCATGCGATTGT	ref_306_upstream	4	1	4	8	7	7	12	10	9	6
TCACTTCTATGTATTG	ref_306_upstream	5	3	14	9	14	3	9	4	9	8
AAATCCGTACCAGGCC	ref_306_upstream	12	16	19	10	9	7	12	11	14	10
GCTGGCGCCTCCTTAA	ref_306_upstream	40	32	47	32	38	42	41	33	37	33
ATGACTCAAACTCCAA	ref_306_upstream	81	76	115	91	101	77	80	76	98	78
AAGTTGGAACCAAAGA	ref_306_upstream	31	21	33	26	22	26	23	14	18	29
ACTAGCCCTTAGGGAT	ref_306_upstream	19	29	12	8	19	9	14	6	7	13
ACATTTGTTGAGAACC	ref_306_upstream	0	2	0	0	0	0	0	1	1	1
ACATTCGACTATGTGT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
CGATAGCGCTTCTGCC	ref_306_upstream	23	22	21	24	19	21	26	21	15	23
TTTGGTTGTAACGGAA	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTTCGATAAGCTC	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
AGAATGATTCAACATT	ref_306_upstream	32	38	37	33	33	32	19	31	41	31
GGACCAGCCAGTCACT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
GCAAGACCTGTCACCC	ref_306_upstream	44	68	72	53	65	42	59	42	66	60
GTCGCACTATAATCTG	ref_306_upstream	16	27	26	15	20	15	23	15	13	26
ATCCTACGCAAAGATT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATGTAGATGCTT	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTTAGAAACATCA	ref_306_upstream	64	75	62	55	66	61	71	70	85	60
CCCCCAGGTTCCCATG	ref_306_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCCAGTAATATAT	ref_306_upstream	59	90	102	78	79	77	90	70	100	73
CAGTGGGGCTAGTAAT	ref_306_upstream	21	29	30	19	33	21	26	31	29	18
TCGTACGCGCTTTTTA	ref_5221_upstream	0	5	1	1	1	2	3	6	3	0
GTGCTCTTATTCCCCA	ref_5221_upstream	0	5	2	1	6	0	5	0	7	3
ATAGCGTAATCGTCCT	ref_5221_upstream	15	34	26	14	21	14	23	14	30	16
TTTATGATTTTTGTTT	ref_5221_upstream	4	4	2	8	6	10	13	1	10	7
TCCTGGGGTCGTCCTT	ref_5221_upstream	27	53	35	28	46	25	48	20	56	22
GATACTCTCGGTATTC	ref_5221_upstream	4	8	2	2	3	5	10	4	13	5
CAGCCGGTTTGCAGAT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TACTTACTTTTCAAGC	ref_5221_upstream	26	133	37	20	138	23	148	25	150	19
CTGGAAGTCCCGTCTA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
ATGATATTCATCCTAA	ref_5221_upstream	14	21	34	21	20	17	29	20	20	9
ACCCGAGATGACGATT	ref_5221_upstream	14	26	11	12	37	12	36	10	27	16
GCGACCTGATTACCGC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGTCCGCGAGACA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GATGCTGACACGTTCG	ref_5221_upstream	4	9	11	3	4	3	12	5	9	5
TTTGTCACAAGCGTGT	ref_5221_upstream	4	3	1	2	2	3	4	3	4	0
GCTCTTGGCTGTTTAT	ref_5221_upstream	6	14	10	14	11	4	10	10	9	6
TCATTTGTCTCGGCTT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGCCTCTTTGCAG	ref_5221_upstream	2	2	1	0	1	1	3	1	3	1
TAGAGGACATCTGTTG	ref_5221_upstream	0	1	0	1	0	0	1	0	2	1
TCTCGCTAAGGTGAGC	ref_5221_upstream	14	31	20	23	31	13	21	23	43	16
CGTAGTGGCATTTATG	ref_5221_upstream	10	18	8	14	25	17	19	12	17	16
GTTCATAACCTGCAGC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTTAGTAGGTCC	ref_5221_upstream	19	28	27	23	29	14	37	12	25	25
TATGGGTCTTCTTCTC	ref_5221_upstream	17	13	17	6	16	8	16	8	10	2
TAGTTGGCTGGTGCTT	alt_5221_upstream	10	48	17	14	32	19	49	18	32	9
TCACAAGTCGCTACTG	ref_5221_upstream	14	32	5	16	30	13	25	22	39	15
TTGAGACTGATCGGTA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTTTTTTACACCG	ref_5221_upstream	43	89	79	45	73	51	100	38	106	36
CTGTGGCTGAAGGGTT	ref_5221_upstream	40	68	52	46	77	39	72	34	54	30
ACTGGCTTGTCACTTT	ref_5221_upstream	5	15	12	4	14	1	11	6	10	3
CTCCTTCGGAGTTGGT	ref_5221_upstream	1	9	4	2	8	4	9	5	2	5
TTTGCCATTTCTTGAA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
ATAGATCTCAGCATCG	ref_5221_upstream	29	59	26	27	37	22	52	16	48	15
GACTGGACGTTTGCTA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
AACCCCAACTGCGCGT	ref_5221_upstream	36	40	27	29	46	21	39	22	36	29
CGTATTGGTTGGGAAT	ref_5221_upstream	5	18	13	5	19	6	9	3	14	6
GTACCGATATCATTGT	ref_5221_upstream	10	15	15	11	22	12	24	14	36	10
TACTGTAACAGTTGAC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
AATTCAAGGCCACGTA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTTGTTACTAAGA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCCTGTGGCGATC	ref_5221_upstream	5	15	9	19	24	11	14	14	34	11
CCCCTTCGACCCCGGA	ref_5221_upstream	25	33	13	19	40	17	33	25	40	18
TGTGTTGATTGCAGCG	ref_5221_upstream	14	19	12	16	27	19	33	9	35	15
AAGATAACTCTCATGT	ref_5221_upstream	29	47	50	39	35	40	40	19	54	19
TTAAATGGCTAACCTC	ref_5221_upstream	8	11	5	7	9	6	9	7	4	4
TACAGTTTTTTTAGAT	ref_5221_upstream	2	6	0	0	1	2	2	1	3	1
GTTTTTCCGAGCTTGA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GACACTACGAGAAGCT	ref_5221_upstream	10	38	16	12	31	21	30	12	24	21
TCCAGCGCTTAGTGAA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CATGAGTATCCACCGA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
ATACTCCTATGATGAA	ref_5221_upstream	9	20	16	12	23	11	32	7	16	7
TGGACTCTAATACCCT	ref_5221_upstream	46	80	48	46	112	44	102	51	93	43
AGTTCTTCGGGCGTCT	ref_5221_upstream	24	39	31	16	22	17	40	24	46	23
TCGGTGGTCCACGATA	ref_5221_upstream	14	36	20	13	21	18	29	16	24	11
GTTCGGGGACTGTTCC	ref_5221_upstream	3	3	0	4	11	1	10	6	10	2
TGTCACCGAAAAGCAA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGTATCCAAGGGT	ref_5221_upstream	40	88	51	56	79	37	72	50	89	33
GTCCAGTGCTTTGCCG	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
ACACGTGCGTCTTCTG	ref_5221_upstream	4	3	11	7	17	0	4	4	5	0
TTTGGGTTTTGCATCG	ref_5221_upstream	10	4	9	8	12	4	11	7	8	8
ATGATTTTCCTTTTTG	ref_5221_upstream	0	0	1	1	0	1	2	1	2	0
AACGCTGGTACTTTAG	ref_5221_upstream	27	72	47	50	62	38	63	30	93	20
GTTCTGATCATCTACT	ref_5221_upstream	25	69	43	30	65	50	75	34	64	36
TCAATGGCCGATACCT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTAATTTCTTCGC	ref_5221_upstream	25	33	25	21	36	19	54	23	39	22
GATTTCACCACACAAC	ref_5221_upstream	5	9	9	2	10	3	4	4	8	2
TTGTCTTTTCTACAGA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CGCACGATCAGTTAAA	ref_5221_upstream	1	4	3	4	5	3	5	2	4	3
TCTCGGTACCGCTCGG	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCTTTGCCGCATG	ref_5221_upstream	3	4	6	4	11	8	11	1	6	3
GAATAATTGCGTAACC	ref_5221_upstream	17	45	31	29	39	27	53	23	48	16
CAAAACCCTGCGCTCG	ref_5221_upstream	3	2	2	3	3	1	2	0	5	2
TCACATTCTTAGTTTC	ref_5221_upstream	16	18	17	8	12	14	13	15	23	10
CGCGCAAAACGTCGTT	ref_5221_upstream	12	30	14	14	25	12	29	10	29	13
CCACCTCTTTATCAGT	ref_5221_upstream	12	26	14	14	36	17	37	11	32	9
TTTACAATTGCACTCA	ref_5221_upstream	6	15	7	16	16	8	11	10	15	12
TAGGGCTGCTTTTCGT	ref_5221_upstream	15	26	13	16	18	13	24	14	26	10
CCAGGGGCGTCGTCTT	ref_5221_upstream	10	20	14	14	26	6	24	11	28	6
CTCCATAGGAGGCGGT	ref_5221_upstream	121	231	134	118	212	115	221	124	278	92
CAGTCTGAGTGTAGGT	ref_5221_upstream	6	9	6	7	8	3	26	7	16	5
TGTTGGCCTTGTAACT	ref_5221_upstream	4	7	9	6	10	3	12	8	5	5
TTCTGCTAAGGTAACT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CTTATTATTATTTTGG	ref_5221_upstream	5	17	7	7	19	7	11	13	10	10
GTTAAGGCATATCTCT	ref_5221_upstream	14	21	13	21	18	16	15	13	26	12
TGCAAATTTGTCGGTC	ref_5221_upstream	13	22	16	17	30	12	28	18	25	7
TCTTCGGTCATTATTG	ref_5221_upstream	14	33	22	20	43	32	43	11	44	16
GCCTGTACGACGTGCT	ref_5221_upstream	9	26	13	12	31	15	31	9	28	7
TGACCCGCGATTGATT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CTATTGGGTATCTTCA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TAAGATTAACGCGGCT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GGAGGGGATTGCTTGT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCTCATCCACGGC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TACTAATATCTACCCT	ref_5221_upstream	19	40	27	21	40	25	23	20	43	21
AAGGAAGAATACGGGG	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGCTGGTATACGT	ref_5221_upstream	58	75	58	60	72	57	78	38	89	45
TGGAACTTAACACATT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTTACTGGACCGA	ref_5221_upstream	13	9	11	17	14	5	23	14	24	14
TGCACAACTACGCAGA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GAACCTCGGGAGACGT	ref_5221_upstream	7	11	10	7	15	13	12	4	25	10
AACTGGGCAAGTTAGC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCTGGGCGATAA	ref_5221_upstream	35	44	40	45	60	36	56	33	72	23
TTGTCTGTTCAGTTAA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GCGGAACTGGGCAAAT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGGGCGACAATTC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGAGAGGTAATCC	ref_5221_upstream	5	4	8	3	10	5	18	4	16	2
CTCTTTGGGTTCATGG	ref_5221_upstream	28	55	34	27	45	24	62	26	55	38
ATGGTGTACAGTCAGG	ref_5221_upstream	3	9	7	9	2	3	10	2	9	5
ATGAACTAGGCCGCTG	ref_5221_upstream	34	70	65	52	72	42	88	33	78	38
CGTTGATGCACAATAT	ref_5221_upstream	77	154	92	85	143	105	136	87	157	81
CGTAGTCCTTGGTTTA	ref_5221_upstream	3	1	0	1	0	3	0	2	3	2
TGTGCCAGTCGAGACG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCGTTTTGCTTGA	ref_5221_upstream	21	50	31	29	49	27	50	29	61	27
TAGCAACACACTGTGT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGTTCGTAAGCTT	ref_5221_upstream	2	5	5	7	3	3	11	2	14	4
TCCCAGCTCTTACCTA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
ATACTGATCTCTATTC	ref_5221_upstream	33	62	46	41	63	27	72	30	69	26
CATCTGTCCTTCTCGA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTAGGTTCATTG	ref_5221_upstream	13	28	13	24	34	7	17	22	34	9
GATGCCAGCGGTATCC	ref_5221_upstream	22	39	20	31	39	19	35	28	38	18
ATATATAGTATGCCCC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GATCTAGCTTTTACGG	ref_5221_upstream	25	23	25	24	15	17	20	9	29	16
ACTCACAAATGCTTTA	ref_5221_upstream	38	69	45	36	72	39	59	42	75	32
CCGTACCTGCCGTCCT	ref_5221_upstream	52	93	73	65	117	49	98	44	93	50
CCATTGCTGTGCCAGC	ref_5221_upstream	52	105	85	55	118	54	99	64	117	59
ACTTAGCTTAACGGGC	ref_5221_upstream	21	38	21	35	23	27	32	14	29	18
TGCGTAGGCATTCGCG	ref_5221_upstream	66	116	87	101	132	70	131	66	145	75
CGTCCGCGCCACTCCC	ref_5221_upstream	8	7	10	4	19	4	19	5	10	6
TCCTGAGGGTACCCTC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CAAGCTACAGCAGTCT	ref_5221_upstream	17	28	17	7	22	6	34	17	26	16
TTAGCCTATATGAGAT	ref_5221_upstream	7	14	11	7	17	5	24	4	24	10
TCGATCGTCAAGGTTA	ref_5221_upstream	21	109	22	16	113	22	139	19	121	22
TTCAGCTAGCGTGCTC	ref_5221_upstream	11	33	15	8	34	20	47	14	39	14
CGTTTTGGCACAGCCC	ref_5221_upstream	48	71	45	42	67	55	74	43	57	40
TTATATTTTGGCGTAG	ref_5221_upstream	2	6	2	5	5	4	3	5	1	2
GTTTTTCGGCACCTAC	ref_5221_upstream	27	42	26	22	41	23	37	17	47	13
TGCGCTTCCTTCTCTT	ref_5221_upstream	13	16	9	9	8	14	11	9	10	7
ATAATCGTTCCTGCCG	ref_5221_upstream	1	1	3	0	2	0	1	0	3	0
AACTCTTCAAACGCAG	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CTGACGCCAAGGTTCT	ref_5221_upstream	25	44	14	10	25	16	40	19	27	14
ACGGCGTCGGCCTCCT	ref_5221_upstream	11	13	11	12	7	15	7	8	12	10
ATTGGGTCACGCCTGT	ref_5221_upstream	28	55	48	44	59	35	58	33	79	44
CATCACACTTCCGTCC	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CTATTCTTTAAGTGGA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TTGTATGAGTAGTCCT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTATTGCCTTACC	ref_5221_upstream	0	0	3	0	4	0	4	0	3	0
TTAGGTCCCTCTCTAT	ref_5221_upstream	24	46	16	21	38	16	48	19	25	12
ATCGATCTTCTCTAGG	ref_5221_upstream	14	34	27	18	34	17	26	20	39	13
TTACAACTCGCGACGG	ref_5221_upstream	37	66	47	34	56	33	80	38	88	28
TGGTCATGCAATGACT	ref_5221_upstream	3	5	4	3	3	1	13	0	2	2
TTGGTTGTCTACCCAC	ref_5221_upstream	9	5	4	3	10	3	5	6	9	3
TCTCTTCCCCGCCAAC	ref_5221_upstream	17	17	11	17	8	12	17	9	17	11
TACCTGTGCTGGGACT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
GCTTACTCCTTTGCGT	ref_5221_upstream	5	21	16	11	22	8	26	6	22	15
TTTGTTTATCATTCAA	ref_5221_upstream	15	25	20	14	28	11	22	18	29	12
GGAGCGCCGAACATCT	ref_5221_upstream	15	31	17	15	34	10	27	12	31	17
GATCAGGTGAGATACC	ref_5221_upstream	16	36	23	21	46	25	38	17	31	9
CGAAAGGCTCATATTC	ref_5221_upstream	15	38	22	26	42	13	38	21	49	19
TAAAATGACATGAATC	ref_5221_upstream	21	53	34	33	36	21	39	26	51	22
TTGCTGCCCTCTATAA	ref_5221_upstream	6	10	2	8	4	7	11	1	8	7
GCAGCTATTAACTGTA	ref_5221_upstream	8	17	8	10	6	3	19	7	28	10
AGGTGTTGAGGAGTTG	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
TAAACAAGCTGTATAG	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCCTACTGTTCCT	ref_5221_upstream	10	15	3	10	21	11	13	7	20	9
GCGTCCCAGGAGTTTC	ref_5221_upstream	28	23	44	26	21	31	29	30	31	26
GTTGCGTCCTTGGACC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
GAATTCTCTCACCGTT	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTGGCTAGAAGAA	ref_5221_upstream	0	0	0	0	0	0	0	0	0	0
AGGGCTTCGCATTTTG	ref_5221_upstream	20	30	19	21	32	20	16	15	27	23
ACAATACACCAGAGGC	ref_5221_upstream	13	28	11	8	23	9	23	10	38	9
AGGTGTTACCGAATTC	ref_5221_upstream	27	48	57	34	73	42	61	42	67	33
GTTGACTAACGGCCAT	ref_5221_upstream	7	28	17	16	26	14	20	13	18	8
AGCTCGAATTTTCTCT	ref_5221_upstream	26	40	29	15	44	24	32	27	37	14
TGCTTCGCTTTTGTAT	ref_5221_upstream	12	17	29	13	27	12	27	12	20	7
ATAGAATATAAACTGC	ref_5221_upstream	6	9	5	9	14	8	14	4	14	7
GATATCAACTAACCTC	ref_743_negative	84	140	99	73	202	85	197	67	182	68
GTGGTAATGGCTGTTT	ref_743_negative	4	7	9	4	18	5	10	9	8	4
TAGCCTCGACCTATTT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TTATGGACCAACAAGT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TGTTTCGAATCTCTTC	ref_743_negative	14	25	22	20	20	15	35	14	33	24
TACCCGTCACCGCTTA	ref_743_negative	9	33	15	15	42	5	40	8	34	7
GGCTGACCTACTATCT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CCTTAGCGTTGTGAGC	ref_743_negative	7	30	13	8	24	7	23	8	16	9
CATGTTTCACCTACGT	ref_743_negative	17	34	34	13	51	16	62	22	56	15
CTGACTTTGCCGAGCT	ref_743_negative	10	13	8	4	12	2	7	5	15	3
TTCCACTGTCATCTGG	ref_743_negative	8	10	7	2	12	8	11	5	8	5
TTTGCTTTCGAGGCTC	ref_743_negative	4	11	3	6	15	3	10	8	15	5
GTAAAGTAGTGCAAGT	ref_743_negative	20	61	51	30	64	22	73	21	65	22
GAGCTCCGCCGCTTTT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GGGTTAATTCCTATAT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GGCTGTCACGGTCTTC	ref_743_negative	3	10	10	3	6	2	4	4	7	2
TGTTTCCTCGATCGTA	ref_743_negative	23	54	37	30	70	24	66	36	64	32
TTTCTTTGCTATGGCT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CACTGGAGAACTTGGT	ref_743_negative	11	17	14	8	21	15	30	12	24	11
CCCGTTATTAACTGGC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TTTGCGTTTTTATTCT	ref_743_negative	38	85	41	45	63	35	77	30	83	39
TATAGCGTAAAATTTC	ref_743_negative	3	2	0	2	2	1	3	1	4	1
AGTTTACTCGTTAATA	ref_743_negative	4	10	5	4	2	3	6	4	14	5
TTTGGGGTGTGGGTGT	ref_743_negative	0	7	4	5	4	3	3	4	4	1
AATGACTTAACTTAAT	ref_743_negative	2	9	2	1	2	2	3	1	7	1
CACTCGGTAATCGTAC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CGTCGGCGACCGCGGT	ref_743_negative	10	20	6	13	19	8	24	7	35	10
TTGGGTTTCCTTCCAG	ref_743_negative	0	5	2	7	6	0	8	0	7	3
CTGGTTGGTGTCTGCA	ref_743_negative	6	11	2	3	4	4	12	2	3	2
TTTTCGCGGGGATGCC	ref_743_negative	7	17	8	3	18	7	18	7	20	6
TCTCTGAGTGTCTGTG	ref_743_negative	0	1	2	0	0	3	2	2	2	0
GCATATTTCGCTTCTG	ref_743_negative	21	28	30	16	24	24	22	17	18	12
GTTTATCTAGGTACAA	ref_743_negative	23	24	17	21	20	16	17	11	36	13
CGATCACGGATCTCCC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GTGATGGGTTCCCTGT	ref_743_negative	51	141	64	60	132	53	132	55	138	67
GTCAAGCGTTCAAGCT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TCTCAGTGGAAATGCC	ref_743_negative	2	6	5	1	4	3	7	4	12	1
TAGTAATAACTTGGTG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
ATAGCCTGCCTTATTT	ref_743_negative	24	58	32	30	69	21	72	29	66	28
AGGAATAAGTACCATC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CTTGACTTTCCTCGTC	alt_743_negative	21	41	15	22	35	14	57	12	39	17
GTTGTTCCGTTTCCCC	ref_743_negative	28	64	51	39	59	25	86	33	62	29
GGGCCCTATTGTTCAG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CAGCTTTTGGTTCCTT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GTGGATTGGTACCTAG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TATGTTTGTTTCACAC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
AGGTGTCACATTTTTT	ref_743_negative	2	1	0	0	1	0	2	0	5	0
GTAACGTCATACCTTC	ref_743_negative	9	19	4	6	19	5	21	3	24	9
GCAATTTCGCATGTGA	ref_743_negative	2	9	1	6	10	7	7	2	8	2
CACTATGCGTTCAGAC	ref_743_negative	7	13	1	11	16	5	12	6	9	4
TGTTGTCTTTAATGAG	ref_743_negative	18	36	24	21	54	26	44	19	42	11
TATTCCCTTTAAGTCT	ref_743_negative	26	40	26	32	36	15	37	22	52	23
TATGCACATTATTTTG	ref_743_negative	14	42	14	13	35	10	32	17	33	14
GATTATATGCGTCAAC	ref_743_negative	24	40	22	22	35	17	45	16	55	17
CACCAACGACTTCCCA	ref_743_negative	3	10	5	9	11	3	11	7	13	4
TGATGAGCCAGACCGA	alt_743_negative	16	37	20	30	39	13	39	20	40	13
CCATTATTGATTTATG	ref_743_negative	52	112	55	47	117	57	114	35	112	43
TGTAGCGCACGGTTTA	ref_743_negative	2	10	2	2	8	2	8	3	8	7
TTTCCGTTCCGCGCGG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
AGGGCATATCATCGGA	ref_743_negative	0	0	0	0	0	0	0	0	0	0
AGACAAACTGTGATCA	ref_743_negative	23	56	27	25	38	17	54	22	52	28
GCCTCGCTCAATAAAC	ref_743_negative	35	90	57	46	76	54	75	47	103	42
CACTTAATCCTTCCTC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TTAGCCCGCTGATTCC	ref_743_negative	35	75	54	39	65	47	60	47	89	39
CTCCACGATGCTTTCT	ref_743_negative	3	8	1	2	7	1	7	2	2	2
CCTTCTATGCCCCACC	ref_743_negative	19	81	27	39	88	11	105	25	103	19
AACAGCGTGACCACCT	ref_743_negative	28	38	13	22	36	21	33	20	32	21
CAGTAACCGGATTACA	ref_743_negative	44	134	68	50	95	65	107	65	125	46
GTAAATGCGTCGCACC	ref_743_negative	23	34	20	13	31	13	30	10	32	10
AAGTCCCCATTGATTT	ref_743_negative	12	34	11	13	24	17	21	21	27	13
TTTGAACTCCCCTCGA	ref_743_negative	1	6	0	0	14	2	2	0	7	2
TATCCTGTTCTGCGCG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CGTGAGGAGAAAGTGG	ref_743_negative	6	21	7	6	20	6	21	10	20	5
CTTCGTCGGTGTTGCA	ref_743_negative	38	51	38	32	50	24	70	19	81	25
GATCGCTAGGCACGTT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
AAAGCGAGGAGACTTT	ref_743_negative	10	12	12	8	15	5	6	2	19	8
TTTTATATTTGTCGCG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TTCTAATTCAGTGCAT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CGTGAAAATCATAAAG	ref_743_negative	3	10	18	7	15	10	15	7	17	8
GTGGAGGCATGTTTCG	ref_743_negative	15	18	7	12	15	8	25	8	20	11
CCTCGGAGTGGTTTTC	ref_743_negative	9	26	14	4	29	3	14	10	17	6
TAATACACGACCTTCA	ref_743_negative	43	92	44	32	83	29	105	35	79	41
GAGTCATGTTCTTATG	ref_743_negative	3	3	4	5	7	4	5	7	7	2
ATCTTGTCTCTCTGAC	ref_743_negative	22	48	17	12	39	14	49	20	34	11
CGTATGTGTCCCCATT	ref_743_negative	21	25	21	11	26	9	38	18	46	16
ATTTAAGCATGGTTAT	ref_743_negative	0	0	0	1	2	0	1	0	1	0
CTGCTCAGTAAGTGCT	ref_743_negative	1	4	0	0	3	1	3	0	4	2
CGGCGTGCTGCGGCAA	ref_743_negative	68	112	80	79	122	71	127	63	131	81
CTGTCGTCGGATTATG	ref_743_negative	7	10	3	5	6	5	10	3	5	0
ATATACGTGCCGTGGC	ref_743_negative	12	17	13	11	22	10	13	12	29	9
CATGTTATAGTCTCGG	ref_743_negative	3	5	10	1	7	2	10	5	10	5
GGTCATGCCGTGTTAA	ref_743_negative	21	46	29	13	61	19	40	18	34	19
TTGCCTACCTCGTACT	ref_743_negative	4	19	6	6	23	3	18	6	20	9
GTGGCAACGCTATTCC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CATATTGGAGATACTC	ref_743_negative	41	92	56	35	132	43	93	36	118	38
CTTCTGTGTCGGGCTT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GTGCCTTGTAATCCCT	ref_743_negative	9	24	4	9	13	8	12	9	19	7
ACTGCCAGCAAAACAA	ref_743_negative	19	54	26	25	49	19	56	18	58	24
TTCCAAAGATGTATGA	ref_743_negative	9	22	10	9	19	13	21	9	24	7
AACTGATCACTAAGTC	ref_743_negative	25	60	27	20	64	30	30	22	67	19
CACGTGGTAAGTCTGC	ref_743_negative	10	13	10	13	16	4	17	5	9	9
GGGTGAACCGGGTGTA	ref_743_negative	10	23	12	7	21	11	26	8	15	6
TCGTGCGATCTGTGCT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GGAATGGATGGCTTCC	ref_743_negative	20	14	22	18	26	13	24	14	25	8
TATCAGGTCGTCAGGG	ref_743_negative	7	15	6	6	12	3	8	5	12	6
ATATCTTTGCGACTGG	ref_743_negative	17	19	12	14	33	11	23	12	26	9
ACACATGTTGGTTCCC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TAAGAACTATCACTCC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GTGTTATTGCGAGGGA	ref_743_negative	10	24	4	11	23	12	18	10	35	18
GGTTGAGTCGTTCATC	ref_743_negative	17	44	16	17	36	18	36	14	46	16
ACGTTCCGGAATACGC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CTTGTGACTTCGGTCT	ref_743_negative	119	244	158	108	252	134	266	126	285	99
TTCGATTCACAGCTGA	ref_743_negative	8	21	7	10	14	6	12	3	16	3
CCTTCTGAACATATTC	ref_743_negative	12	22	13	14	30	3	24	9	15	7
GCCTGCACCATCGCAG	ref_743_negative	12	29	10	17	35	14	33	16	46	12
GAATGGTACTGACGTG	ref_743_negative	16	24	20	7	34	17	25	14	30	12
CACGTCTCGCTTCCGC	ref_743_negative	10	42	21	12	40	10	36	18	33	14
GTAGGTACATCATCAT	ref_743_negative	15	33	28	13	44	24	32	17	60	19
TTCCAATTCAGTGTGC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CACGTGGTGAATTTCG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GTTGTCTACACGCGCG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CATTCAGTTTACCTAT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GGGACTGTGGCTAGCA	ref_743_negative	53	72	52	47	86	37	115	32	89	47
GACGTAGGAAACATCA	ref_743_negative	23	24	12	10	23	12	17	13	23	11
TTCTGTCTAGTTTTTA	ref_743_negative	34	81	62	50	92	51	87	41	76	47
TTTGCCAGTTATTGGG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TGCTCAATAGGTCTGA	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TTGTATGACGGGTCTG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TGTTCGGCTTGGACTG	ref_743_negative	19	29	22	19	39	23	29	14	45	14
CGTTGGGATGTTTTCG	ref_743_negative	16	28	22	20	33	25	42	23	41	16
ACTTACGCGCTCCGTT	ref_743_negative	0	8	1	1	14	1	7	0	9	0
TCGACCGGCCCATTTA	ref_743_negative	4	9	6	9	9	14	11	10	17	4
CTCGATTTTATTTGCT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CGCAGCTCGGCTGTAC	ref_743_negative	10	37	23	21	39	17	24	12	37	12
AGTAGCCTCGTTCTTT	ref_743_negative	5	11	6	4	6	7	7	4	11	3
CTGGGATGCTCACGAG	ref_743_negative	6	24	10	13	18	12	20	6	23	5
TAAGGACCGGACGGTA	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TCGCTGAGGTACCTTG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TCGTGGGGGCTGGCCG	ref_743_negative	7	23	9	6	15	3	19	3	15	8
CAGATACGAAATATCC	ref_743_negative	11	15	16	11	12	11	20	18	21	11
GATGCTGTGCCGAAAC	alt_743_negative	22	39	24	21	42	23	45	21	56	24
GGGCTTTAGTGAAGGA	ref_743_negative	14	31	24	10	28	12	28	8	41	11
CATAGCATTTAAAGTT	ref_743_negative	18	37	17	17	46	13	44	20	37	14
TGCGTGCATTCTGTTA	ref_743_negative	10	16	14	2	19	4	34	7	24	6
AGTATCAGTGTGCCTC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CGTCTGGTAAAATGTT	ref_743_negative	29	47	19	22	66	28	59	25	65	23
TTATGTCTTTGCCCTG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GTAATCCACGGCCCAA	ref_743_negative	7	12	10	12	20	12	19	7	16	12
ACGAGCGATAAGCTAT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TTGTAACTTGGTAACG	ref_743_negative	62	139	88	71	146	75	139	70	174	74
ACCTATGCTCATGGTA	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GAGGTTCGTCGGGTTC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
GTATCGCCATGGTCCA	ref_743_negative	55	111	72	51	94	69	101	64	114	53
AGTGGCAGAGGTAACC	ref_743_negative	2	0	1	2	3	0	3	0	1	0
GCTTCTTATTTCATTG	ref_743_negative	0	0	0	0	0	0	0	0	0	0
CAAAGGCGTTCCTTGG	ref_743_negative	17	42	27	23	47	22	65	14	45	19
TCACCGCGGGAGCTCT	ref_743_negative	99	142	94	73	145	83	135	64	179	90
TGCGAGGTTATCAGGA	ref_743_negative	27	45	31	24	37	33	39	20	34	19
GTTCTTGCCCCACTCA	ref_743_negative	2	2	2	1	2	0	1	1	1	3
AATAATAATCATGTTT	ref_743_negative	13	7	8	3	9	7	21	4	12	8
TGGACTTTATACGCTT	ref_743_negative	65	157	79	83	159	68	186	60	171	56
ATTTCGCGACTGTCGA	ref_743_negative	14	34	13	8	22	9	34	10	38	12
TGGTTATGGTTTGCTG	ref_743_negative	8	13	4	1	2	5	21	4	5	2
TGTAGTAATAACAGAA	ref_743_negative	19	48	25	17	49	20	47	12	60	23
GATCCTATTGGTCGAC	ref_743_negative	13	28	15	12	38	20	30	14	29	17
TAAGCAATTTCAATCA	ref_743_negative	13	26	15	11	15	15	22	5	18	10
GGTTATTTGCAATCGC	ref_743_negative	0	0	0	0	0	0	0	0	0	0
ACTCTGGGTCGTATGG	ref_743_negative	19	30	11	14	22	15	32	20	30	19
ATCTTCCCCGGCAGTT	ref_743_negative	21	64	25	19	44	21	58	25	74	24
TTTGGCGCCCTCATCA	ref_743_negative	2	6	1	1	2	2	3	1	3	7
TGTGCATCAGGATACT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
ACGGGACTAGGTCGTC	alt_743_negative	4	4	3	3	9	2	11	3	11	7
ATGTTGTTTTGTGTCA	ref_743_negative	12	29	14	10	30	13	29	9	30	4
AGTTAACCTGTGCGGT	ref_743_negative	0	0	0	0	0	0	0	0	0	0
TTTCTCATATGGGTTG	ref_743_negative	11	19	17	13	20	13	20	11	32	13
ATTCGAGTACCCTTGC	ref_4925_fdr	6	15	11	9	17	5	17	13	10	14
TGGCGAAAGCTCCCCT	ref_4925_fdr	32	51	33	45	57	32	56	28	60	23
CATCTGCAATAGGAGA	ref_4925_fdr	12	24	14	9	34	19	25	21	25	13
CAATAGAACAGGCATG	alt_4925_fdr	97	102	124	82	133	99	127	91	142	76
ACTCTCCCTTTCGCTT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
AGCTACGATACCTGCC	ref_4925_fdr	46	81	62	62	92	45	66	38	79	32
GTCTGCAAGCCTTTAT	ref_4925_fdr	59	93	66	43	70	23	56	52	77	48
TTACCCGAAGGGGCGA	ref_4925_fdr	66	81	68	46	80	52	79	55	85	54
GCCGATCGTGATGACT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TAACTATGCAGCCGCA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTCCCGTGTAATC	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
AGGAACTTAATGCCTC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TCACTTATCGCGTCTA	ref_4925_fdr	25	38	14	15	36	11	25	14	47	11
CTATTTTACCATACAG	ref_4925_fdr	24	34	30	21	27	23	43	15	43	20
ATGGGGCACATCCTAA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTTCCTACCCAGG	ref_4925_fdr	3	15	11	9	10	4	15	6	8	7
CTAGACTCGCGTCTCT	ref_4925_fdr	25	28	21	9	22	18	30	18	17	22
AGTTTGATGCGCTGTA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTCGGTCCTCTTA	ref_4925_fdr	17	80	17	19	83	19	82	20	88	12
CTGTAGCGGTGGTGGT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGCGTCCTTCGCT	ref_4925_fdr	20	16	15	9	11	9	14	12	9	8
TTCGGCCGTCACTAGA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
ACTAGATTTCTAGAAC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
ATCCATGAGGGGGGGG	ref_4925_fdr	69	90	85	68	83	62	74	51	86	58
CATCCTTTCTGGAACA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTAACCCCGTTAG	ref_4925_fdr	46	75	66	55	106	46	89	62	93	56
TCTCTCGTTTTACCGC	ref_4925_fdr	90	107	78	94	100	56	129	79	111	71
GCACAATTTTTAGCTG	ref_4925_fdr	1	6	8	3	10	4	7	6	5	5
GCTTTTTCCCGTCGCC	ref_4925_fdr	111	114	104	73	86	81	128	90	122	91
CAGGGGCGCGCCACGT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTCAGTCCTGGCCGGC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGGCATCGCACAA	ref_4925_fdr	8	16	12	5	6	8	13	3	15	9
TATGGCACAGGAGAGT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTGTCCTTACGAA	ref_4925_fdr	3	6	10	5	2	11	7	2	4	6
CGGGAATGGACTAATC	ref_4925_fdr	61	71	116	49	66	63	78	51	71	75
CACGCGAACGCTAGCA	ref_4925_fdr	0	2	4	0	3	1	5	0	2	0
ACAGACAGACTATTGG	ref_4925_fdr	54	67	49	39	58	47	69	49	63	47
ATCCCTATGTTCCCAG	ref_4925_fdr	17	18	22	18	25	21	22	22	19	8
TTTTTAAGGGCTTGAT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGTACTGCAAGAT	ref_4925_fdr	149	194	184	137	177	181	211	147	215	132
GCTCATTAAAAGAACT	ref_4925_fdr	14	32	20	12	38	23	39	15	39	13
TACTCTGCCTTTATTT	ref_4925_fdr	19	10	21	10	21	20	15	12	16	15
TTGTATAAGAGCGAAC	ref_4925_fdr	24	35	27	28	46	29	51	26	38	14
TTTACAGGTACAAATG	ref_4925_fdr	8	7	4	10	12	6	13	5	13	6
CGAATTAGCACCGGGG	ref_4925_fdr	7	6	10	9	4	3	9	6	12	6
CGTCGTCGTCTCGGCG	ref_4925_fdr	9	35	15	20	38	15	28	16	45	10
TAAAGCACTGTTCGGC	ref_4925_fdr	18	31	29	24	30	24	32	22	35	18
GGATAGTGCCGTTTGC	ref_4925_fdr	24	38	30	30	34	35	34	34	37	21
CGGATGTTCACGTATG	ref_4925_fdr	4	4	6	2	7	6	4	3	6	3
GAAATTTCGCGGACTG	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
ATTGGCGGCCGGATAT	ref_4925_fdr	57	63	100	76	72	74	101	66	75	67
ATAACAGTAGTTTTCA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGTAACTCCTTCT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTATAGAATGGGC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTATTCGGATGTT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCTCTGGGAGCCC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTACTCGCCCTCCGGG	ref_4925_fdr	7	5	10	5	20	11	6	7	14	9
TATCAGTTATTAATCC	ref_4925_fdr	53	63	45	33	51	52	63	36	64	31
TTATGGCTAAGGGAGA	ref_4925_fdr	26	17	14	14	16	10	27	14	14	9
GCCGTATCTCATCCGC	ref_4925_fdr	33	47	31	36	40	28	33	34	50	24
CCCCAGAGCTCGAATT	ref_4925_fdr	7	5	12	4	8	5	10	4	10	5
AATGTCAATGGGGTAT	ref_4925_fdr	2	6	2	2	3	1	11	3	7	3
GTTGCAGCCCTCGATT	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TGCACAACCTACGATC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CAGTAAGTCATATCTA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCGATCTTTTATT	ref_4925_fdr	11	11	12	12	16	8	13	2	6	8
CCTTTCATCGAGGACC	ref_4925_fdr	50	59	50	44	84	42	66	48	71	41
CTGTACCTGTAGTCCG	ref_4925_fdr	12	9	17	10	24	9	14	13	17	11
GTGAATACCCGATTTG	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
GACTCCGGAGATCTTA	ref_4925_fdr	17	17	28	21	12	20	19	24	26	18
ATGGACGTACCGATTT	ref_4925_fdr	5	10	3	2	6	4	7	0	3	5
GCCTTATTCCAACTTG	ref_4925_fdr	8	11	8	4	11	11	11	10	6	3
GTATGTGCAGCCTGGA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCCTGCCCCTGTT	ref_4925_fdr	10	15	7	6	21	6	18	5	23	8
TCCTTATTTAAACGAT	ref_4925_fdr	14	42	18	17	25	16	34	13	26	20
CTTTACTTTATGGCTT	ref_4925_fdr	27	42	24	21	35	32	28	32	32	30
GAAGTACGTCTCACTC	ref_4925_fdr	20	52	28	27	45	33	46	14	46	29
TCGCGCACTTCCCGCG	ref_4925_fdr	28	34	27	22	28	19	43	18	42	29
ATATTGTCATTAGCCG	ref_4925_fdr	98	162	149	105	154	96	189	120	193	91
ATGGGATAGAACCTAA	ref_4925_fdr	9	23	17	16	25	13	24	7	24	11
TCCCCTGAAGTTAGTT	alt_4925_fdr	12	8	8	5	14	2	9	10	12	7
TCGTCTTCTAGTCTGA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTGTAATAACATC	ref_4925_fdr	15	8	18	13	12	8	13	9	17	4
CTAAGTTTGTTAATGA	ref_4925_fdr	62	67	69	68	79	76	88	54	77	51
GTCGGAAGCCACACGC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
AGACAAACCTCAAAGC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGAATTTCCTGGA	ref_4925_fdr	15	10	12	11	10	13	19	11	9	14
ACGTTTTTGCCTAATC	ref_4925_fdr	3	6	0	4	2	1	5	2	8	8
AGTCCGCAGTTTATAA	ref_4925_fdr	9	13	3	3	13	5	13	5	11	8
CCAGACACCCGTCATA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
CATAGTTATAGCGTCC	ref_4925_fdr	8	13	9	8	12	16	18	11	6	9
CATGTCATGTCAGTTA	ref_4925_fdr	34	50	48	32	51	35	58	36	55	20
GAAAATACTTATAGGC	ref_4925_fdr	49	66	63	53	67	48	75	37	70	39
ATTGCAGTTTCACGAT	ref_4925_fdr	2	14	2	5	11	9	5	5	9	5
CATATGTGCCTTATGA	ref_4925_fdr	1	1	4	3	6	1	4	5	3	2
AGGTACGGCTTCCCCC	ref_4925_fdr	31	34	41	27	42	33	55	26	45	33
CGTATATTCGGATGTT	ref_4925_fdr	240	337	302	224	354	243	370	251	392	197
TACAAATTTTGCTATT	ref_4925_fdr	40	38	37	35	55	38	39	21	47	37
CTATCCGGTAATACAC	ref_4925_fdr	15	18	22	19	49	9	28	18	24	12
TTTTTACCTTACGAGC	alt_4925_fdr	373	421	427	434	376	385	443	310	459	347
AGTCCTTTTCGGTATA	ref_4925_fdr	15	14	18	18	19	4	14	7	18	18
GCTATTCGGCGGTGAC	ref_4925_fdr	24	34	41	23	24	22	43	19	34	29
AGAGCCTAGCTTCTTA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTTAGCTCAGCCT	ref_4925_fdr	51	79	65	63	79	44	84	68	83	35
TAGACCATTAAACATC	ref_4925_fdr	22	51	52	34	64	45	49	31	53	26
ATTGCCCGTGGCGGGT	ref_4925_fdr	40	50	68	47	59	55	72	62	62	51
TTCTCAGTTCCGGGCG	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
GTCATTGAGACTCGGC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTGTCTGGCTCT	alt_4925_fdr	208	204	279	198	146	248	165	173	177	197
TTAAGCCACTTGGTCT	ref_4925_fdr	37	68	37	34	63	37	64	30	68	36
CCCCATCTCCAGCATA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
ATCAAGGTATTCAGAC	ref_4925_fdr	9	7	11	5	2	1	7	5	6	0
CTTCAGCACGTACAAC	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
TGATTGAAACGTGCTC	ref_4925_fdr	4	11	7	8	6	9	6	3	10	12
CTTTTTATATGGGATC	ref_4925_fdr	23	48	27	29	36	28	43	32	40	32
TCTACGTGCGCCTAAA	ref_4925_fdr	0	0	0	0	0	0	0	0	0	0
AATTAATCTCTTGGTT	ref_4925_fdr	12	13	9	14	15	8	12	8	14	12
AGGGTAAGTTTATAGG	ref_4925_fdr	38	48	48	36	38	46	53	32	55	26
TACCCGTGGTTTGAGT	alt_6015_new	34	63	53	39	57	47	77	35	74	24
TAGTCAACGTACCTTC	alt_6015_new	0	0	1	0	1	2	4	0	3	1
CAGTAAACTTGGGTTA	alt_6015_new	1	4	0	3	5	2	5	1	2	6
AACCAGCCGCGACATG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CCGCATTGCGAGGGCA	alt_6015_new	22	12	20	13	18	12	13	9	14	6
ACTTCGCACAGCATGG	alt_6015_new	15	17	12	9	15	21	14	11	14	11
GATCTTATCTGTGGGG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CTTCATCTTAGAGAGT	alt_6015_new	32	51	39	31	42	37	51	31	53	20
CGTAGCTATTTAAGTC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GGTTACTGATCACTTC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
AGTTAAAGTGGACTCA	alt_6015_new	42	63	50	73	66	44	84	47	81	48
TGGCTTTCCGGGGTCT	alt_6015_new	2	1	8	2	2	5	6	4	5	3
GTACCCTGGCGGGCAG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TGCACAGTAACTCGGA	alt_6015_new	37	68	53	45	75	39	63	41	68	44
GGCCCACTGTATGTCC	alt_6015_new	48	100	59	50	98	42	114	30	148	19
GGCGATCCTAATGCCT	alt_6015_new	73	74	61	82	73	50	100	59	78	50
ACCGCGTTCTTCACAG	alt_6015_new	56	81	65	65	93	59	103	58	104	57
CATCCCCCGCCGCCAA	alt_6015_new	10	17	10	8	13	13	18	10	25	5
GCGCATAGGCTTGGGG	alt_6015_new	9	11	13	15	17	11	11	10	20	13
GAATCGGATAATGCAT	alt_6015_new	33	39	37	21	26	20	32	23	40	27
CCGCACACCATGGCTG	alt_6015_new	4	14	8	6	18	4	21	8	25	2
CTTTTGGTCGTGGCGG	ref_6015_new	25	38	38	17	37	22	44	44	37	23
GGCTAGATTGAAGTTT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GTTTGTTCTATGCCTT	alt_6015_new	12	19	16	10	15	7	12	14	31	8
GGTCTACTTTTTCCTC	alt_6015_new	26	27	33	27	24	21	28	19	23	9
CTATGTGTAGTTTTGT	alt_6015_new	3	10	8	7	11	5	15	4	6	5
AGTTCTGTAATTAATT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TGGTTCTTCCTAACCC	alt_6015_new	33	38	42	41	41	19	55	28	50	37
CGCGGGCCACGTAATT	ref_6015_new	10	13	8	14	18	9	13	17	9	16
CTTTACGGTCTAGAAC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CGTTCGGCATGTCCGG	alt_6015_new	26	36	27	29	39	23	43	28	35	29
TAGTTTAAGTAATAAT	alt_6015_new	16	19	25	16	18	24	26	15	24	11
ACATACGATTCTTGTG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TTCGTTATTCCCCTTG	alt_6015_new	7	4	7	2	5	6	8	4	10	5
GGATTGAGACTAAAAT	alt_6015_new	3	10	10	6	12	7	15	7	14	8
CACATTGTCCACTGCG	alt_6015_new	19	35	12	17	24	13	27	18	40	15
TCTGCGCCACAGCTGG	alt_6015_new	1	1	0	0	2	0	4	0	4	1
GTTTTCTTTTAGGAAT	alt_6015_new	9	6	4	4	10	9	13	7	8	8
ATGTGTCTATTCTCTA	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CAGTAATTCGCATTAT	alt_6015_new	56	70	62	65	75	56	75	55	68	46
AGCCCCCGGCTGCGTA	alt_6015_new	12	20	11	9	16	8	10	14	18	8
TTTACTTTGCCGCACA	alt_6015_new	6	14	6	7	6	10	11	8	10	9
CATGTGACTTTATCGC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TATTAGACTCCGGTTA	alt_6015_new	20	33	24	23	22	23	44	25	39	23
TTGCCTTTTTTCACAC	alt_6015_new	28	58	39	32	60	45	76	35	55	30
CCATGTAGCGACCGTG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TCCGCGGAAGCGCATA	alt_6015_new	0	1	2	1	1	0	2	1	3	1
TTGATAGGGGAGGTAG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CCCCATCCGACTTTCG	ref_6015_new	6	15	7	2	10	7	15	4	16	3
TCAGGCTACAGGATAT	alt_6015_new	18	20	19	15	10	16	18	9	15	11
CATCTCGCGGAAATAA	alt_6015_new	18	22	17	20	27	20	16	12	33	19
TACCGGAGGCACACAC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TTCCCTGGACCAGTAA	alt_6015_new	13	34	20	10	39	21	45	26	43	13
TTTCGATTTCGGACAG	alt_6015_new	24	13	17	26	20	27	22	16	19	14
TGTAGTCAGTTTTTCC	alt_6015_new	14	21	10	17	18	20	28	9	14	12
CTCTTCACTGCGTCTT	ref_6015_new	415	595	502	403	653	380	637	393	622	389
CCTGACTAATCCTATT	alt_6015_new	12	9	15	9	9	8	20	17	7	9
GCACTCCTCAGTGCCA	alt_6015_new	2	4	0	5	15	3	10	0	8	0
TTACATGACGTCTTAG	alt_6015_new	18	22	27	30	34	25	29	23	19	18
GCCGACTCCTGACCTT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GGTCGATATCCCCCTG	alt_6015_new	6	5	4	1	3	3	10	1	4	1
GGTCGGAACACAGTAT	alt_6015_new	45	58	55	32	39	43	45	25	48	14
TTGCCGTCAATCTGCT	alt_6015_new	20	23	26	15	23	19	28	17	21	12
TTTTGTGCTTGCGCAA	alt_6015_new	5	11	7	2	10	2	9	4	11	9
GGACCTGTTATTGGAA	alt_6015_new	36	86	48	50	69	56	75	32	71	35
CGTTTTTTCTCTCTGT	alt_6015_new	4	9	8	4	9	6	5	4	5	9
TTCGCACAAACGTTTA	alt_6015_new	1	7	4	2	10	3	5	5	3	4
CGTCCGACAATTTCGC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GGATCATGTAACGCCG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GTGATCAATTTGTGCG	alt_6015_new	98	110	94	81	94	79	107	93	119	84
GACGGTAAAGTTAGTC	alt_6015_new	25	35	22	17	26	26	28	29	36	21
TTTTAACCCGGTCTGT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GTAGGCGTCAAGAGCG	alt_6015_new	10	4	6	6	8	3	3	3	10	6
CTCGCCATTCCAATCG	alt_6015_new	46	79	64	53	101	44	65	48	66	29
CGTGGCGCGCTCCCAT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TCCGCACGGTATCTAT	alt_6015_new	2	6	4	6	7	3	2	5	6	6
ATCCTTGAGTGTAAAA	alt_6015_new	6	8	2	11	8	7	7	2	14	7
TCGCTGTTTCGTATGC	alt_6015_new	14	22	16	25	26	24	24	23	27	20
TATCGGCTGGACTTAA	alt_6015_new	15	28	17	19	18	14	20	8	18	23
TAGAAGGACGGTTCCC	alt_6015_new	29	25	38	23	34	27	37	18	55	26
TCAACGCCCAGACGGC	alt_6015_new	1	5	3	3	0	0	2	2	3	1
GGTTTAGTTCCGCCCT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GTCGAGCTGTTAGCAG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
AACTATACTGACGGCT	alt_6015_new	73	89	86	78	90	61	118	54	104	74
TCCACTCATATTGGTG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TCAGTCCTATGGTGGG	alt_6015_new	80	92	82	96	99	70	88	56	124	64
ATTATTCACCTCTGAC	alt_6015_new	4	13	10	5	6	4	4	2	5	6
CAAAGGATGCGGGTCT	alt_6015_new	0	5	2	5	4	4	4	4	2	4
ACAGGTTTAGCTGGCT	alt_6015_new	11	19	7	14	22	18	23	14	18	14
ATAGTGCTAGCTCTCA	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TCTCAGTGGGAGTCCT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GTGCTGTTATCCGGCT	alt_6015_new	32	43	40	31	42	32	34	19	52	34
GTCGATCTGTTTGCAG	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TTTATCATGTCACGAG	alt_6015_new	23	26	29	29	25	16	22	14	26	23
AACGCACTACCACTTT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CGAGAATATCGTAAAT	alt_6015_new	9	10	13	6	16	9	5	9	14	6
GTTAATTGAGGCAATT	alt_6015_new	37	33	32	36	56	39	41	29	38	39
GTTGTCTAAGTTCGAT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
ACTCTCTGTTTGTGTT	alt_6015_new	8	9	11	5	8	3	2	3	3	2
AATTTAACGTGTTTTA	alt_6015_new	5	9	8	4	7	4	6	1	9	3
TCGCTTTACGTGTAGT	alt_6015_new	5	3	8	2	7	5	4	3	6	3
GATACTCCTATCCATG	alt_6015_new	41	49	44	43	63	46	62	39	56	41
ATCTGAAGCTGCCCAG	alt_6015_new	9	2	6	8	5	9	5	5	5	7
TACTGGCTGATGTAGG	alt_6015_new	23	35	23	16	31	19	40	24	29	17
GTAAGGGTAGGGCTAG	alt_6015_new	18	29	21	21	24	22	36	18	20	11
TCCAGGCGATCATAAT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GCGTCCTTTCTGGTCA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
AATGTATATTTAAGGC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GCGTTTACATTGTCGG	alt_6015_new	0	4	3	1	2	7	1	2	5	0
GTGCTAACTCTAGAAC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CCTGTTTTTCGTAGTG	alt_6015_new	14	24	28	11	34	13	21	15	16	9
GAGTCCTACAGCCTCG	alt_6015_new	2	3	4	3	5	1	1	1	5	1
TTCACATTGACGTGAT	alt_6015_new	63	65	67	65	82	44	81	47	71	48
CGATTGCTTGTTTTTT	alt_6015_new	22	20	33	16	29	26	26	17	21	16
CAGTAGAGAAGCCATT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GATCGCCTGTTAGGGC	alt_6015_new	12	12	14	9	19	6	17	12	12	15
CACTTCATCGGTATTC	alt_6015_new	46	36	42	37	57	25	61	43	59	38
CATGCGCTTTAATTTT	alt_6015_new	24	31	32	25	30	30	41	21	40	16
CGCTCCGAATCAGCGA	alt_6015_new	2	7	8	1	10	1	9	3	3	4
CTCATGCCGCACTCAA	alt_6015_new	17	23	27	36	41	12	24	31	34	20
AGACGGCGTTGTCATT	alt_6015_new	14	13	12	15	11	10	12	9	19	11
GACAGCCCCAACTCTC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
ATGAATTAAGTCAAGC	alt_6015_new	41	50	63	42	42	33	58	36	61	43
GGGTTTCTGGTAAGTC	alt_6015_new	5	11	13	9	19	11	17	5	11	12
AGTACCGTTATGAATT	alt_6015_new	22	36	25	22	38	22	18	19	32	14
CCCCTTAGTACCTTAC	alt_6015_new	12	32	14	13	24	25	26	23	37	16
CTCATCACTGCGTCTT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TTTTGCTATGGATTTC	alt_6015_new	12	33	20	25	22	10	27	22	26	20
TTGATAATCACGCCCC	alt_6015_new	0	0	0	0	0	2	0	0	0	0
TACTGGTCACAGAAAA	alt_6015_new	18	25	12	12	20	18	22	25	27	13
CGCTACCTGTTTAAAA	alt_6015_new	26	42	34	25	60	20	59	32	51	39
GTCCACAGGTTGCACT	alt_6015_new	1	2	4	0	5	4	13	4	6	1
TTTGACTCGCGATCAA	alt_6015_new	30	32	38	28	38	26	41	25	50	24
CCGCTGGCTTATACCT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
CACGTGCCCGTCAAAC	alt_6015_new	26	25	12	14	18	12	29	15	22	12
TTCCCTGCCTTATATA	alt_6015_new	39	73	46	39	57	28	54	25	68	25
CATATCGTTAGCCCGG	alt_6015_new	37	44	57	48	46	34	35	36	44	44
CATAGCTCACGTTGAC	alt_6015_new	38	28	37	18	45	25	54	27	40	17
CCGAGGCCATGTCCGA	alt_6015_new	3	16	14	11	9	5	12	7	4	6
TCAAGTGAAAGCTTAC	alt_6015_new	6	16	13	10	17	8	21	21	16	5
TCTGAGTATGCGAGGC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
ATTAAAAAGATTTCTC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
TAATAGATGGTTTATA	alt_6015_new	72	73	91	63	125	50	103	62	80	52
CGTCTGAATCTCTAGC	alt_6015_new	1	6	2	8	6	3	12	5	4	2
ATCATGTCGAAACTCA	alt_6015_new	0	0	0	0	0	0	0	0	0	0
ACGATGGATCTGTCCC	alt_6015_new	12	27	26	10	15	14	21	14	16	20
ATAGCTCCCCAGTTGT	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GCTAAGCGCGCCGTCC	alt_6015_new	0	0	0	0	0	0	0	0	0	0
GATAACTTCTATCCCG	ref_1587_fdr	31	18	25	34	16	15	15	21	20	32
GGTACGGACAGCACCT	ref_1587_fdr	26	19	41	24	18	25	23	26	14	15
TAGATTTCAGTATGTT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TATTGTCTTCTAGTAC	ref_1587_fdr	28	35	40	46	26	31	39	36	32	34
TTGAGCTTATGTCCCC	ref_1587_fdr	11	7	16	27	12	12	10	21	11	21
CTTGCTAATAACTCTC	ref_1587_fdr	10	32	8	10	30	10	36	6	31	12
TCAAGTTTGAGCGGGT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCCTACTGGACA	ref_1587_fdr	52	51	63	48	46	42	46	55	34	46
TCACGATCAATCTATG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TTATAACAAATCTAAA	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGGACATTTCTTCTTT	ref_1587_fdr	19	18	33	23	13	16	17	17	18	22
TGCTATGTCTAGGGAG	ref_1587_fdr	37	22	36	40	23	26	36	31	30	26
GCGCCCGGGATTGGTG	ref_1587_fdr	74	64	80	88	99	86	74	71	76	75
GACTGCATTCGCAAGC	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGTCCTTAGGGTT	ref_1587_fdr	21	14	27	21	19	27	22	36	19	14
GAAGGATTACATCCAT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCCACTATAAAGC	ref_1587_fdr	11	14	17	15	10	15	8	15	25	16
CGTTCTATACATTGAT	ref_1587_fdr	26	11	42	32	21	17	26	27	19	19
GTCACGAAATTCCGCT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGTTATGATAGG	ref_1587_fdr	25	24	43	48	32	32	34	31	33	35
GTGCGCTTTTATGCGC	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TCACTCGTCAATAAGA	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CATATTAGTTTTACTA	ref_1587_fdr	234	188	246	236	228	204	197	239	216	230
GGCACGAGTCGCGCAA	ref_1587_fdr	13	10	23	25	7	22	7	18	15	20
TTAATCTACCTTAGGG	ref_1587_fdr	98	72	106	76	63	88	67	94	53	68
GTGCGGGTCTTTGAAC	ref_1587_fdr	14	12	23	11	20	14	17	11	5	18
TGGTGTTCCAGTGTAG	ref_1587_fdr	3	1	6	6	2	1	2	7	8	2
GCTAGATTGCAGGTTT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGTACTTAATTGC	ref_1587_fdr	14	25	12	13	20	14	16	15	16	9
TGCTCTGCTCTGTATT	ref_1587_fdr	47	26	54	43	27	40	29	21	20	30
TGTGTCGAGGAACCCA	ref_1587_fdr	39	31	46	45	22	32	37	35	32	35
TACTTTTCTGTATACT	ref_1587_fdr	100	62	116	98	71	88	50	98	84	77
CTACCTGGCTTGCTCT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGACTCAACCCAGGTC	ref_1587_fdr	35	38	56	48	42	50	53	47	39	48
ATAGCATCTTTTATGT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGTTCTCTCCACA	ref_1587_fdr	79	64	84	94	60	74	63	80	64	63
GTCCGTTTTATTTATT	ref_1587_fdr	241	198	290	233	258	235	256	230	261	217
GTCCCATTAGAGAGTA	ref_1587_fdr	52	31	43	37	32	45	34	41	38	31
CAAGGCTTAAATCGGT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CGGCGCTACAGTTATC	ref_1587_fdr	27	16	19	19	10	19	15	11	8	27
GCTGGACCGGCGCAAA	ref_1587_fdr	14	9	12	8	7	7	6	9	17	10
GCAATTCTTTTGTGCG	ref_1587_fdr	45	51	55	46	32	46	28	39	47	40
TTGTTCTGTGGTAGGT	ref_1587_fdr	15	12	10	18	10	9	11	16	15	16
ACTAGCCTTCGCGGTC	ref_1587_fdr	53	53	61	76	58	59	48	73	49	52
AGAAATTAACATCTGG	ref_1587_fdr	1	4	12	9	2	8	2	3	4	4
TATCTAGTATCTACAT	ref_1587_fdr	19	22	34	32	20	29	15	19	18	25
GCCTGGGCTTTAGCTT	ref_1587_fdr	26	21	39	25	28	28	25	24	28	18
AATTAGCTCGTTAGTT	ref_1587_fdr	168	129	217	188	127	171	148	159	128	153
ATACTAGTGTACCTAG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTTTACCTTTTAC	ref_1587_fdr	104	96	116	122	79	113	93	109	102	79
AAGTTTTGAAGGAAGT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
AATCGTAGTTTTTTTT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTCAGACGGTATG	ref_1587_fdr	7	3	12	8	3	7	5	9	2	4
TGCGTTCAATAGAACA	ref_1587_fdr	46	25	46	41	22	40	33	33	17	24
TGTTAACCTCCACAGG	alt_1587_fdr	15	14	22	19	14	26	20	20	20	21
CAATCTGATCGTCTTG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CAACATGGACCCTCTC	ref_1587_fdr	61	43	97	90	32	81	57	77	42	59
ATGCTACAGCGAAAGG	ref_1587_fdr	39	23	24	27	20	19	17	29	27	22
TCCGTCCGTGGTGTCG	ref_1587_fdr	37	88	84	72	74	71	90	58	82	61
CCCCTGAAATCGTAGT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTGGTCCTTTTGT	ref_1587_fdr	51	27	73	70	37	46	39	59	27	46
GGAGTTCTATGTGGCT	ref_1587_fdr	111	59	99	119	87	107	71	79	83	86
TGCGTGTTGATGACCC	ref_1587_fdr	25	23	29	26	26	24	15	27	22	19
GTCTCAGCTTTAGGGG	ref_1587_fdr	44	32	64	45	25	48	32	35	22	39
ACACTGTCTAGCCGGA	ref_1587_fdr	79	53	91	86	66	94	57	82	47	88
CTTCGAGTTTGTATGA	ref_1587_fdr	44	33	46	47	33	33	29	23	34	28
CAACAACAGAACTTCC	ref_1587_fdr	25	16	29	27	27	23	14	25	14	28
GGTTTTGTAGTGCTCT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAAGCTTTCGCGT	ref_1587_fdr	17	17	16	14	14	10	6	16	11	7
TGCGGGTTGGCTGTTA	ref_1587_fdr	36	38	54	43	21	35	25	42	37	28
GCGAACCTTGCGGGGT	ref_1587_fdr	27	16	20	21	13	25	15	19	18	17
GTCATCAGTTGATTGA	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CACCCTTCCAGTCGTG	ref_1587_fdr	3	1	0	0	0	0	0	1	1	0
CTTATAGGCGTTATGT	ref_1587_fdr	17	13	28	24	13	16	24	17	22	17
GTGGGTGTTAGCAACT	ref_1587_fdr	8	15	16	13	7	13	6	4	5	23
CGTATATACGACAACG	ref_1587_fdr	42	33	53	51	36	36	41	49	34	44
TCCTTTAAGGTCGAAA	ref_1587_fdr	34	30	52	40	28	42	33	39	29	45
CCTTGGATTCCCGGTA	ref_1587_fdr	25	13	34	31	21	28	17	27	17	26
GATCCCAATTATTTTT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGCCTGGTCCAAT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CCTGATCAGTCCCTGT	ref_1587_fdr	32	26	42	26	20	29	23	29	12	21
GGGCTTCCCTCTTTGC	ref_1587_fdr	28	12	30	15	19	16	21	20	16	13
GTGGTTACAGAGCTAA	ref_1587_fdr	244	172	266	278	174	218	175	247	188	225
TCTGGTAGCCCTATTC	ref_1587_fdr	96	62	112	93	60	85	90	104	76	83
AACATCGGTACTCACA	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GGTTATCGGGGAGAGC	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTACTAATCGATG	ref_1587_fdr	80	47	90	85	47	81	60	78	51	86
TGTTGATCATCTGGAG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATATTGTAGCAG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GAGCAGGGCCTAGTTA	ref_1587_fdr	21	14	20	24	19	26	15	25	24	16
GCGGTGCTACGTTATA	ref_1587_fdr	26	27	38	33	35	26	31	23	23	32
AGAGTTCCACTCTGCG	ref_1587_fdr	126	102	146	130	105	122	125	118	126	135
AATCGGCCACTTGTGG	ref_1587_fdr	29	22	40	18	14	18	17	18	9	12
CGCTAAGGCGGTGTTA	ref_1587_fdr	60	15	63	47	12	43	15	46	21	52
TTCGTTCTATGGCTTT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGCTATGGTCCCT	ref_1587_fdr	48	44	55	53	36	26	38	57	34	41
TTTCTATGTAAACTAC	ref_1587_fdr	35	19	43	42	37	36	30	31	21	27
CATCTCGAGGCTACCG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
AGTATGATGGCGTGCC	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GGAGCTTAAGTAGTCA	ref_1587_fdr	12	3	7	11	4	6	9	8	5	18
TCGCCTGGTCTCGGAC	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
ATAACGCGCCACCTAG	ref_1587_fdr	130	81	164	140	100	110	94	110	101	119
CTGAGTCTATGACGCG	ref_1587_fdr	14	13	17	6	12	10	10	8	6	6
TAATCGTTAGATAAAG	ref_1587_fdr	70	41	77	59	44	56	58	66	65	54
GTGCCACCAACGTCCG	ref_1587_fdr	24	35	38	26	30	25	19	24	23	22
TACTATAACTGTCTGT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
ATTATAGTGCTTAGAC	ref_1587_fdr	73	81	87	76	93	81	103	79	86	57
CCGCACGATGCTCATC	ref_1587_fdr	26	67	21	27	76	17	50	25	62	25
TTCTTCGGCTGGCTTT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TATCTACTCCCAGGCA	ref_1587_fdr	8	9	8	7	7	8	11	8	12	6
TTGGAAACCGAATTCC	ref_1587_fdr	80	78	89	89	57	89	78	86	75	57
GTCATTGTTGTACTGG	ref_1587_fdr	29	38	42	52	21	37	35	39	28	32
ATGATTCATATAATAC	ref_1587_fdr	92	68	108	94	71	77	92	90	65	82
CGAATCTCTTGTTTCC	ref_1587_fdr	86	87	101	84	98	70	100	64	91	62
GAGGTTAGCCTTCTGT	ref_1587_fdr	46	40	40	42	31	33	49	23	37	32
CTTTGACATGCACGAG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
GAGACTCAAACCTGGA	ref_1587_fdr	55	44	64	44	36	62	33	60	40	47
TACATCGCTCGGGAAT	ref_1587_fdr	114	86	139	112	82	108	84	100	105	99
TGATACGTGCATTTTT	alt_1587_fdr	35	16	22	39	11	39	18	30	18	28
TCTAGTCAACGTGCTT	ref_1587_fdr	1	6	3	1	1	1	1	4	3	2
CAGAGCTTTCAAGTTT	ref_1587_fdr	98	78	126	124	82	120	101	115	97	95
GCCAATTTTCGTTCCC	ref_1587_fdr	33	37	63	49	38	38	30	54	30	32
GCGTCCAGTCAGTGGC	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGTCTTTTCGTCT	ref_1587_fdr	1	2	5	4	2	3	5	4	3	2
AAATAGCGCCAGTCCC	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CAATTGAATTGATGTA	ref_1587_fdr	0	0	2	0	1	1	0	1	0	0
AAATGATACGAAGTCA	ref_1587_fdr	192	147	232	208	143	184	147	164	137	192
GGATCCCTCGCGATCT	ref_1587_fdr	52	32	74	52	35	74	57	52	40	48
CTTGATGTTTCGAACG	ref_1587_fdr	425	266	514	461	325	418	362	361	338	349
CGGCTTGTTTTCAATC	ref_1587_fdr	20	10	25	17	21	17	11	15	11	14
CAATAGTGGAGGGTAC	ref_1587_fdr	83	63	89	70	33	84	54	64	67	55
AAGAGAGCGTGTTTTT	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TCACGGTTTCACTTAG	ref_1587_fdr	38	33	47	47	33	33	30	42	46	55
CAGTAACTCATTGTAG	ref_1587_fdr	20	7	26	31	18	24	16	3	7	17
GGTCGCGGCTGTATTA	ref_1587_fdr	25	22	27	31	15	28	29	21	20	28
ACGAGACGCGCGCTTG	ref_1587_fdr	5	2	5	1	3	1	5	7	4	7
TGAGACTGAATGCATG	ref_1587_fdr	49	44	76	55	46	52	39	60	44	62
CCAATGATCCCAATCA	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCCGGTGATGTAA	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTCACATTCCAAC	ref_1587_fdr	2	4	6	6	8	3	3	4	4	3
AGCTTCTGTATTCGAG	ref_1587_fdr	27	28	45	34	28	36	27	42	30	46
TTCCGTTGTTGTATCG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
ATCTACCGGGCAGTCC	ref_1587_fdr	54	40	38	53	36	45	33	27	29	27
TCCCGATGGGTCTTAT	ref_1587_fdr	146	101	177	165	91	144	123	155	126	116
CCTTCTGGTAAGCCTG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAGCCTCTTGGCT	ref_1587_fdr	28	35	33	34	33	30	30	32	34	32
TCGCTCACGCACCATC	ref_1587_fdr	35	24	54	42	32	37	55	40	25	32
TGTCGCGATTTCAACG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTGTCCCGTCAC	ref_1587_fdr	16	9	21	19	14	20	10	18	17	15
ACCATCTACAGACAGA	ref_1587_fdr	100	63	114	102	83	85	85	80	77	73
AGTTTTGGCCCGTCCG	ref_1587_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTCCAGGAGCAGA	ref_1587_fdr	203	151	222	239	155	206	149	203	174	201
CGTCAGTGCTCTGAAG	ref_3161_upstream	1	6	0	0	5	6	1	2	4	2
TAAATCCCATCAACTA	ref_3161_upstream	47	53	55	53	52	47	69	38	70	41
TGCCGGATGGCTGTCA	ref_3161_upstream	34	37	42	26	37	23	34	23	38	29
ATGCCTGCAATTGTCA	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCCCTCTCTCGCA	ref_3161_upstream	2	7	2	3	8	0	2	1	7	2
GCAGCATCAACGTTTT	ref_3161_upstream	23	43	36	27	30	24	35	15	50	22
TCGTGGATGCAGCGGA	ref_3161_upstream	96	130	103	95	123	103	129	65	136	84
TTCACCTACAATAGGC	ref_3161_upstream	11	17	10	13	15	7	18	8	20	7
ATGTCAGATCCGACGC	ref_3161_upstream	8	12	10	12	19	21	14	8	9	6
AGCCATGTCAATACGA	ref_3161_upstream	8	50	21	24	35	18	40	20	43	18
GTTTTCGGTTATAGAC	ref_3161_upstream	1	10	8	14	7	14	13	5	11	8
CCTTCGGAATATCGAC	ref_3161_upstream	24	29	10	14	29	17	19	27	21	13
TGTCAACGCTCATCGG	ref_3161_upstream	23	31	21	21	42	18	19	16	37	21
AGTCCGAGTGCACTAA	ref_3161_upstream	32	30	27	21	30	26	41	19	31	17
AAATTTGAATGGCCGT	ref_3161_upstream	23	26	32	16	36	25	26	18	39	18
GCTGTCAGGCACATGC	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTATGGTCAGATA	ref_3161_upstream	19	24	33	27	48	26	41	21	47	25
CGGCTACGTTAGCGAA	ref_3161_upstream	17	36	30	21	33	23	25	29	22	20
AAGTTTGTAGAGGTAG	ref_3161_upstream	103	163	115	88	142	105	180	97	170	82
GACGACACCGGATTGA	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGCCAGATCCGTA	ref_3161_upstream	6	4	7	5	4	7	10	3	14	5
TTTACATGCTTCTGCG	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
CTACTACGTCGCTGCA	ref_3161_upstream	1	5	0	3	5	0	1	0	2	1
TGGAATTCGGGTGCAA	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
ATAACGTGCTAGTGTT	ref_3161_upstream	4	13	12	3	13	11	22	8	22	2
TGTTTCTCTAGGTTAT	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
GCAATCTTCCTTTTTA	ref_3161_upstream	2	4	3	1	13	1	10	3	8	3
AGAATTCATAAAGTAT	ref_3161_upstream	29	41	30	33	28	33	37	35	53	32
TTTATGCCATGCAACC	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
TGATCTGGATTAATAG	ref_3161_upstream	42	70	49	35	63	47	68	34	68	32
CCCGACCGCGGGATTT	ref_3161_upstream	17	46	29	24	46	20	32	25	38	22
ACTTGCAGACGTGCGT	ref_3161_upstream	23	43	27	25	37	28	35	20	40	27
TAAGGGCGCCTTTTTA	ref_3161_upstream	23	15	24	22	23	20	27	16	31	16
TCTGCGGTCTTGGACG	ref_3161_upstream	0	1	0	0	3	0	0	1	1	0
CCGCCACGTCGCCAGC	ref_3161_upstream	55	60	45	39	76	46	63	42	78	33
GTATTCTCGCCTTAAT	ref_3161_upstream	9	13	11	7	11	7	15	4	20	3
ACGGCCCCGTGGCCAT	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
GCAATCCCGGTCGGTC	ref_3161_upstream	5	18	16	10	10	4	20	4	27	1
TCGCCACTTCCTGCTG	ref_3161_upstream	57	85	65	79	106	51	88	48	100	51
AATCGGCCACCGACTG	ref_3161_upstream	8	10	5	7	9	12	6	4	7	5
GAATTGTCAGATAATG	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTCCTTCAATTTC	ref_3161_upstream	28	37	23	18	27	23	36	27	31	26
CAAAGCTTTCGACCGG	ref_3161_upstream	30	68	36	38	72	23	60	42	71	32
GCCTGTGCTATTCGAG	ref_3161_upstream	4	9	4	4	12	2	10	4	11	4
CAAGAACAAGAGGTGG	ref_3161_upstream	28	41	33	24	32	16	37	33	26	22
CATGTCAGCGCCCTAT	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
GATGACGCTCACCTTT	alt_3161_upstream	34	61	31	33	55	28	77	36	94	41
TGCGGCTTTTCGAAGC	alt_3161_upstream	88	160	100	116	183	88	155	108	178	102
ATTAACTCAGCATATG	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
CGGATTAAGGATTACT	ref_3161_upstream	47	84	58	44	71	55	80	44	94	40
GGCGTACCGTGACCTA	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
TGTGAAGTCTCAATGT	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTAGCATTTTTTA	ref_3161_upstream	3	23	15	15	22	6	17	10	15	15
CCTCTGCACAAATTCT	ref_3161_upstream	79	112	82	84	133	89	125	65	137	81
CCATAAATTATGTGTT	ref_3161_upstream	8	3	5	3	7	3	5	4	6	2
TTTATTATCGGCATTT	ref_3161_upstream	26	49	43	42	62	33	50	37	61	47
GCTGCCGTTCTCGAGA	ref_3161_upstream	2	3	4	4	7	1	4	4	2	4
TAGTTCCCTGATGGGG	ref_3161_upstream	103	118	115	97	148	106	155	78	138	96
TTTTAGGGGCATGATA	ref_3161_upstream	51	90	88	58	81	63	116	78	84	55
TCTCTGTTTGTTATAT	ref_3161_upstream	50	59	65	47	69	49	79	54	84	40
CAATGACTTATTGCTT	ref_3161_upstream	4	10	14	1	7	5	10	6	14	6
GCTCTACTTGGTATAT	ref_3161_upstream	1	12	4	4	6	2	3	4	6	2
ATTTGCGCGGAGGGTC	ref_3161_upstream	64	82	51	56	63	47	63	55	69	45
CTGTGTTTACGCCGTC	ref_3161_upstream	7	9	8	11	17	13	19	6	6	11
TTCCGCCGTTGCAGTT	ref_3161_upstream	16	21	12	11	18	18	18	9	24	12
GGCCGCTGTTTGTTTA	ref_3161_upstream	18	35	20	20	47	18	29	22	33	20
TCATTGGCTCAGCTTC	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
GCCATTGCACGCGCCG	ref_3161_upstream	16	27	24	14	44	17	34	17	25	17
TATGGTTCGTCGGACG	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
ACATCTAGAACAGTTG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CTAAAGTAGTCTTGTG	ref_3161_upstream	11	34	25	16	33	15	38	20	38	20
CATTCCAACTGACCGT	ref_3161_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGGGGAGTGGATT	alt_5849_new	0	0	0	0	0	0	0	0	0	0
CTAGGGATCTTTTGTG	alt_5849_new	41	20	25	29	17	18	18	13	12	16
TACCCGACATGATAAT	alt_5849_new	42	25	69	54	41	37	37	44	25	48
AGGCTGTTTGCATAGG	alt_5849_new	11	10	16	9	8	15	16	5	5	14
CTATCTGCCCCCTCCT	alt_5849_new	2	0	2	2	2	0	1	2	0	0
CCAACAGCTCATGGTC	alt_5849_new	37	19	39	27	11	40	17	23	15	21
AGAGCCGTTAAGTTGC	alt_5849_new	107	70	149	115	74	93	60	98	65	86
GAGGTCACTCAAATTT	alt_5849_new	108	57	141	148	60	107	50	97	61	120
ACGTTCACGCGAAGTG	alt_5849_new	20	11	19	25	14	16	11	16	11	10
GCCCACATACAACCGG	alt_5849_new	202	137	298	234	123	196	138	197	166	200
CCACCAGCTTGTCTAA	alt_5849_new	1	6	0	2	5	3	10	3	6	2
GCGCAATACTATGTCC	alt_5849_new	59	31	88	67	40	68	50	68	33	55
ATAAATAATTTAGGGC	alt_5849_new	142	96	156	156	76	128	82	129	94	120
CTATGAAAGGCAATGC	alt_5849_new	40	26	47	39	25	44	22	37	24	38
GTACCGTTGACAGATA	alt_5849_new	0	2	1	1	0	0	2	2	3	1
AGCTATTTGCACACTC	alt_5849_new	19	26	33	24	36	25	28	19	31	18
GTAATAGTCTATAACT	alt_5849_new	8	8	11	7	7	6	2	17	3	8
ACTTATATTAACAGAG	alt_5849_new	71	52	87	97	64	67	47	63	45	60
CGGCGAGAGAGTATGC	alt_5849_new	15	9	19	21	9	12	12	12	13	17
GGATATAAATCATCTC	alt_5849_new	0	0	0	0	0	0	0	0	0	0
TATACGAAGTGGGCCC	alt_5849_new	44	23	56	55	31	63	29	39	25	44
CCCGTGTTCGTTGTTT	alt_5849_new	17	23	23	17	17	13	23	8	25	9
CGCGGGGTGGATGCTC	alt_5849_new	15	8	22	12	10	13	4	8	15	10
CTCATTCTTGCGAGTT	alt_5849_new	67	44	62	63	39	57	47	57	41	64
GCGTGGATCTCCCGCA	alt_5849_new	78	32	67	52	28	68	33	47	42	52
GTTAAGTAAGGATTGC	alt_5849_new	0	0	0	0	0	0	0	0	0	0
ATTATCCGTTCTTATA	alt_5849_new	62	28	99	121	40	74	64	80	51	82
CAATAGCTATGGACTT	alt_5849_new	3	3	6	3	0	6	2	1	1	3
TTATACATTTTTGGAC	alt_5849_new	17	7	8	22	8	15	16	12	17	11
ACAAGCGATACGTTTG	alt_5849_new	26	16	26	21	17	26	11	29	5	15
TATGCAGACCTGATGT	alt_5849_new	0	0	2	2	2	1	0	2	0	1
CCTCATCTCATAATCG	alt_5849_new	30	33	36	31	36	26	34	30	33	39
CAAATCCCATCATTTT	alt_5849_new	74	41	91	77	47	54	37	49	48	62
CCGTCGCACAGGATGG	alt_5849_new	22	30	25	17	25	10	23	20	23	17
TCCGCCCGCGCCGCCA	alt_5849_new	14	5	20	20	10	15	7	17	5	12
TCATTGATGGTTGCGT	alt_5849_new	18	6	17	11	5	4	6	12	9	9
GTCATTGTGTTTTAAT	alt_5849_new	44	35	52	53	25	31	31	40	29	47
TTTTTGATCTGCCTTC	alt_5849_new	35	24	54	41	34	42	16	24	20	47
CTCGCGTCTGCTTACT	alt_5849_new	5	12	5	8	7	6	5	13	10	6
GCGCAGTTTATAGATG	alt_5849_new	0	0	0	0	0	0	0	0	0	0
CTAATCATGTCCCTTT	alt_5849_new	0	0	0	0	0	0	0	0	0	0
GGGGATAGCATAGGAG	alt_5849_new	44	21	53	49	27	44	32	56	26	29
ATGCAGTCCGTAGCGT	alt_5849_new	10	25	23	26	28	15	23	14	19	13
CGCGAATGTCTGGTGG	alt_5849_new	0	0	0	0	0	0	0	0	0	0
TATGAATATTATCGCG	alt_5849_new	103	54	112	105	58	92	55	83	36	73
CTAACTGCTGGACCTT	alt_5849_new	13	13	11	10	2	9	10	14	5	13
TTTACCATCACACATC	alt_5849_new	61	38	86	53	40	41	41	61	52	48
TTTTTATCGTGCCCGA	alt_5849_new	13	4	13	17	9	14	7	21	10	14
ATTTTTTTGTACTATT	alt_5849_new	32	26	44	29	23	35	22	27	27	25
TGTGATTCTCCGACCC	alt_5849_new	30	12	34	31	19	26	26	42	18	19
CACGAGTCTAAGGTGC	alt_5849_new	8	16	5	6	5	6	10	9	15	3
CCTCCCCTCAGGAGCT	alt_5849_new	4	20	9	8	15	3	8	9	12	3
GCCAGTCCGTCACTGC	alt_5849_new	65	43	81	72	35	65	35	54	34	42
TAGGCAAATGTCAGTC	alt_5849_new	14	5	16	11	7	15	6	10	3	10
GCCGACCTAACATTAA	alt_5849_new	40	24	45	39	22	30	23	52	26	29
TCGTCTCGCTTCCGTA	alt_5849_new	19	12	32	19	13	20	14	14	18	21
GGGTTTACTTCTGCTA	alt_5849_new	86	50	96	66	56	81	50	88	58	72
GGTTGTGTCTTTGTCA	alt_5849_new	0	0	0	0	0	0	0	0	0	0
TCTTATGTACATTAAG	alt_5849_new	0	0	0	0	0	0	0	0	0	0
TTTATTGGTATGTCAC	ref_5849_new	60	31	76	79	30	54	45	68	30	56
GGTTCTATTCACACTG	alt_5849_new	57	24	65	43	27	29	36	35	16	36
CTAGTTCAGCGGTTTC	alt_5849_new	27	41	54	34	31	36	29	16	42	33
CATGCCTTGACCACGA	alt_5849_new	25	16	27	15	19	21	24	29	17	22
CTTGATGGGTCGCATC	alt_5849_new	0	0	0	0	0	0	0	0	0	0
ATGTGGAGATCTCCAT	alt_5849_new	15	8	10	13	16	14	14	21	6	18
TGCAGTGAGGCACATT	alt_5849_new	13	5	9	10	5	10	5	14	4	5
CGCACCCATCTCTGAA	alt_5849_new	8	12	18	12	9	13	4	15	17	12
GTATCCCGCACTGCGG	alt_5849_new	0	0	0	0	0	0	0	0	0	0
AAGTGTCTTACTACAC	alt_5849_new	0	0	0	0	0	0	0	0	0	0
ACCATCTTTCTAGATT	alt_5849_new	0	0	0	0	0	0	0	0	0	0
ACTAGGAGTAATTCTG	alt_5849_new	9	5	12	7	1	4	2	11	6	6
GCTTCCGCTTTACAAC	alt_5849_new	24	17	27	22	12	29	21	19	17	22
AAGGAGGAACGAGTTG	alt_5849_new	95	54	120	86	58	95	74	95	66	80
AGATACAGTATCCAGT	alt_5849_new	0	0	0	0	0	0	0	0	0	0
ACATGAACGGGATGCC	alt_5849_new	23	22	38	27	29	17	26	33	16	27
TGACAAGGGATGTTCG	alt_5849_new	0	0	0	0	0	0	0	0	0	0
TGTCCTCGGCGCTTGT	alt_5849_new	0	0	0	0	0	0	0	0	0	0
GTAGGTGTTTGTGCCT	alt_5849_new	26	11	19	14	12	11	12	25	16	30
GTACCAATCACCTTTC	alt_5849_new	32	29	22	22	34	23	20	17	21	20
GACAATCTACAACGGT	alt_5849_new	0	0	0	0	0	0	0	0	0	0
CCCCACACTCAACTTC	alt_5849_new	10	9	8	16	7	12	10	8	6	7
TCAGCACCCCGGGGTA	alt_5849_new	0	0	0	0	0	0	0	0	0	0
CTCTAGCAGTGGTAAC	alt_5849_new	0	0	0	0	0	0	0	0	0	0
CTCAGCTTAAGGAACA	alt_5849_new	7	14	15	8	7	4	5	13	4	6
GATGGTGTCCTTTTGA	alt_5849_new	95	51	145	123	69	122	57	115	72	102
CACGGGGCTATAAGGA	alt_5849_new	23	14	17	19	26	11	24	22	14	10
GTCTTGAACTGCGGCA	ref_5849_new	37	21	55	38	25	23	34	30	35	37
TTATCTCGCTAGCCGC	alt_5849_new	0	0	0	0	0	0	0	0	0	0
TGAGGGTTTTTATCGC	alt_5849_new	1	0	6	5	4	5	2	2	5	8
TTCACTCATATCATGT	alt_5849_new	0	0	0	0	0	0	0	0	0	0
ACTACCTATTCCTCCA	ref_5617_new	51	49	47	65	55	51	45	42	57	43
ATCCGTTAGCATTTCC	ref_5617_new	78	74	80	66	88	63	73	50	79	41
AGTCCACCCTCATGTT	ref_5617_new	29	34	38	43	42	30	49	37	49	27
GCGTACTACGGGCTGT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
AAATCAGGTTTTTATC	ref_5617_new	75	72	68	70	80	72	75	70	89	53
ATTCCCCGATGAAAGT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GTATTATATCGACTCC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CCGCCACCTGGTTAAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CACTAAACGGAGCTTT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GATCGGCCAACCCAGT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CGATTTTTAGCTAATG	ref_5617_new	1	4	1	5	2	3	2	7	1	1
CGCATCTGGCAAATGT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
AAATGGGTGCCTCCTG	ref_5617_new	77	106	107	75	108	76	99	67	123	60
TCAGTAACACGCTGGT	ref_5617_new	97	91	115	122	146	96	125	83	131	94
TGTCACCATACGGCAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TACATACAGGCTCCGA	ref_5617_new	68	69	81	71	87	57	72	67	73	64
ACCGGAGGTCGGGGAT	ref_5617_new	4	13	8	6	15	7	10	4	15	7
TTTGATCACTCTGCGA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GACGTAACGCTGTAAG	ref_5617_new	43	56	50	30	40	39	60	34	63	41
TCACTGTGCTGTGCTA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
AGTTCTCTTCTCCTCT	ref_5617_new	47	46	69	45	51	39	70	58	64	43
TTCGCGAATAAGCGCG	ref_5617_new	17	48	46	25	38	23	40	30	68	26
AGGCAATATAGAACTC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TGAAGTGAGTTGTGTA	ref_5617_new	10	17	6	14	18	17	29	11	20	16
GTCAGGGCGTGGTCGT	ref_5617_new	28	58	28	36	56	22	58	22	64	25
TTAGGCACTGAAGCTA	ref_5617_new	3	6	7	4	2	5	6	2	3	8
TGTGGTCTCAACCCGT	ref_5617_new	8	15	17	12	5	11	10	13	19	6
ATACAGGCACTAATGT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
AGGACACGTTACTCTG	ref_5617_new	31	39	35	32	58	22	44	35	49	38
GCGCAGTTGTTTTTCT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TTACGTCTTGTTCTTA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CATACCGAGGTCAGAA	ref_5617_new	5	5	4	6	2	0	5	4	3	2
TGGTGTTTGTGTGGCT	ref_5617_new	21	32	30	31	44	23	32	17	23	17
CACGCGAATGGTTCTG	alt_5617_new	47	68	67	63	79	44	49	65	69	44
GACATCCTGGATCGAG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CTAGACAATTTTGTCG	ref_5617_new	38	46	24	30	37	33	38	30	36	33
TCAGGCGCTTTTTTGC	ref_5617_new	19	20	11	8	32	16	19	13	22	14
TAGTCAGTTCGCGCTG	ref_5617_new	27	43	52	26	61	36	46	31	51	35
TTTGTCGGGCAACGAT	ref_5617_new	19	23	20	34	27	18	35	22	24	15
TCCTCAGACCATAGCA	ref_5617_new	44	34	35	35	41	25	48	30	49	27
CTATAAGGGCTGGCTT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CGCAAGGCGGAACTAA	ref_5617_new	16	23	12	15	8	11	20	14	17	3
TGGTTCACATTTTCAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
ATCTGCTGTGGTAATC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GGCTACATACTCGTTT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
ATTTGCCCTAGCGCTG	ref_5617_new	25	51	34	36	29	19	27	29	33	31
TTATGTCGTGCGCAGA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CACCTCGCCGCATTGG	ref_5617_new	3	8	3	8	12	7	15	7	11	6
TTAATAGCCAAATCCA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GCCGGGCTTTTCTGAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TATGCGGTCCTCGTTT	ref_5617_new	4	7	4	7	7	4	5	8	7	4
TCGCGATTCTTGACTT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
ATTAGGTATCAGTTCG	ref_5617_new	6	14	15	9	18	8	13	11	18	11
GGTTCCGATATCGCAT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TTGGCCCTACAGTTGC	ref_5617_new	16	27	26	20	20	24	24	14	32	28
TAAGGGACTTGAATCC	ref_5617_new	2	0	1	1	1	1	0	2	2	1
GTCTGGCCAAGATTAG	ref_5617_new	77	139	121	95	142	85	95	81	151	78
ATACCCTCGTGTAATA	ref_5617_new	36	63	48	39	58	39	63	48	71	26
CTCCAAACTTACAGAA	ref_5617_new	10	25	12	12	33	18	36	5	37	7
TGCTGACGTCTTTCTT	ref_5617_new	11	12	7	6	6	9	12	10	10	8
CTGAGCTCACTTGGTT	ref_5617_new	9	17	16	21	12	12	19	13	23	9
TTGGCAAAATTCACTA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TCCTAACTTGCAACAG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CAATGAATTCGGAACT	ref_5617_new	81	78	87	58	80	61	91	72	99	70
GACACATGGCATAGAT	ref_5617_new	13	21	8	15	14	3	16	9	19	10
AGTTCCATTCTGGTAT	ref_5617_new	32	21	21	21	29	21	62	24	31	31
GTCTTTCTCAGCACCA	ref_5617_new	16	19	21	12	19	10	20	14	22	9
CTGACTTCTAGCACCA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TTAAACCTGTCGGAAG	alt_5617_new	118	144	139	116	163	102	191	115	148	106
CACACATGAGTTCTAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CTCAATTGTTGTGGTT	ref_5617_new	41	64	86	63	54	37	62	47	75	48
TATTGTCGTGTTATGC	ref_5617_new	25	32	20	13	27	14	27	11	25	16
TGGTTGAGACATTGGC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CCCGAAAGCGGCTGGC	ref_5617_new	5	14	7	6	7	4	10	6	10	4
ATCCCTTGGCAGTGGC	ref_5617_new	28	43	35	20	40	18	36	25	48	15
GTCGAGCATCGCACCG	ref_5617_new	9	5	12	15	6	13	13	13	11	5
GGATGGCTTATTTCGC	ref_5617_new	13	5	13	9	13	5	20	5	13	14
CTTTGAATTTAACAAG	ref_5617_new	41	69	40	47	48	39	41	36	67	38
CTATGTATGTTAAAAT	ref_5617_new	1	3	1	0	6	1	4	0	10	1
CATCCTTGCTTCGAAC	ref_5617_new	14	14	20	10	29	10	22	11	11	16
TACCTCTCCCACTTAT	ref_5617_new	4	5	7	4	9	1	8	8	6	1
TATCGCTCTTGCGACT	ref_5617_new	10	20	17	15	21	9	20	10	31	12
CGCTAGCAAGTCACGT	ref_5617_new	20	17	21	10	19	11	18	12	16	12
TAAGAGACCTATCCGC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GTGTTTCCCAACCACT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TATTTTGTACTCGCCC	ref_5617_new	2	11	4	9	8	4	16	0	19	9
GACTCCAGTTGATGAC	ref_5617_new	16	20	14	20	30	8	11	7	13	21
AGATACTTCTCTTTTT	ref_5617_new	70	61	73	61	60	65	77	57	58	68
CACTGCGACCTTGACT	ref_5617_new	14	19	11	18	26	13	22	11	29	17
AGTATTATTAGTAGGC	ref_5617_new	19	26	27	29	15	16	22	16	24	13
ACACACCTGCCTGTAA	ref_5617_new	27	40	30	22	43	47	57	23	48	19
CTCGGGGACGTGGTCA	alt_5617_new	24	23	32	28	33	21	31	17	36	26
TATTCTAGGCTGACTT	ref_5617_new	13	27	18	8	19	14	17	14	21	11
TGTTCGCAGCTGTTTC	ref_5617_new	15	34	35	26	37	18	41	17	24	18
TAGCCGACCCTTCTTC	ref_5617_new	9	21	13	10	27	8	19	9	15	8
TAAAGCCACTCAACGA	ref_5617_new	7	12	14	12	8	4	10	4	7	5
TTTGTCGTTTTCGTCC	ref_5617_new	0	0	1	2	1	1	2	1	1	5
CGGCCGATCGTAGGGT	ref_5617_new	2	18	5	8	10	2	7	1	7	2
TTGGGACTCCCATGGG	ref_5617_new	17	26	21	23	20	9	18	26	26	21
TCCTTATTTTATGTCC	ref_5617_new	62	89	69	58	67	60	54	49	90	57
TTTGATAACTCAATTC	ref_5617_new	35	55	24	26	46	25	47	20	52	23
GTGGTTGTTCTACGAC	ref_5617_new	31	32	38	27	49	22	33	33	42	25
ACCACTTACTCTCCGC	alt_5617_new	43	67	37	40	63	41	64	47	61	43
CCCCCACTTGTGCGTT	ref_5617_new	25	33	22	19	45	23	57	23	46	33
CTGTTTCCGATGTCCC	ref_5617_new	39	56	39	41	35	26	60	26	41	31
GGCCTTATTGTGAACC	ref_5617_new	99	112	111	105	150	113	173	112	154	101
CCTCCCAGTTCGATTC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TACAAACGTCTTGCTA	ref_5617_new	13	14	21	13	12	7	16	12	30	8
TCTTTCTCAGTCACGG	ref_5617_new	6	4	6	4	9	1	6	6	3	2
CCCGATCACTTTTACC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TGTGTCTGTAGGCTTG	ref_5617_new	21	33	19	16	27	13	23	11	24	10
AGGATCCGTCTGTTCC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
ACTCCCAGTCTGGTTA	ref_5617_new	2	1	3	0	7	4	9	3	9	2
TCCTTATTATCGGGGC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TAAGACTTCGACTTAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CTCTGTGCATCTTGTC	ref_5617_new	2	3	11	5	11	7	6	7	1	0
ATTGCGTCGGCTTGTA	ref_5617_new	2	3	2	2	4	1	4	1	3	0
TGATGTTGTGAGAGGT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TTCGTCATTCTCACAC	ref_5617_new	3	2	4	8	1	5	6	4	2	2
GATAGTGTCTAAGGCA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CTCTAGCCATTGTTCG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CATAAAATATGCCTCC	alt_5617_new	9	9	5	8	11	5	12	14	10	6
TGTTTAGGTGTAGCGT	ref_5617_new	8	15	12	6	11	13	8	13	18	5
CGTGTATCCGTAACCG	ref_5617_new	64	67	82	51	98	57	89	65	103	51
TATTTTCCTATAAAGC	ref_5617_new	11	13	6	4	7	3	15	8	13	9
TTTCGTGCGCGTTTAG	ref_5617_new	14	33	25	18	12	15	34	23	20	26
CGATTAAAGCTCGACA	ref_5617_new	74	85	79	89	100	68	89	74	106	59
ATCAGAGCTATAAACT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GCGTTATTGGGTCGTG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
AGGATCCATGTTGAAG	ref_5617_new	10	8	6	5	2	2	11	3	9	5
ACTCTCGAGCCGTGAT	ref_5617_new	20	34	21	31	29	16	26	25	29	30
TCGGCCGTGCGCCGTC	ref_5617_new	6	38	13	15	31	6	34	8	47	10
CCGTTGATATTCTTGA	ref_5617_new	16	22	20	17	20	25	22	19	27	11
TCTTTATGCGTGGGAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TCGCGCTTTCGGTACA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TCACTGTAGCGGAGTG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GTGCTCCACGCGAGTA	ref_5617_new	10	18	11	11	18	13	20	12	17	7
TTGAAGGACTTAAGCA	alt_5617_new	33	68	39	50	65	43	82	38	61	33
GTTTGCCTTCGTAGCT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GTTGTTTGTCTGTGGG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TCCGTTGGTGGTAATG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
AGGTGAAGCGGTCTAG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CATGTTTAACGAAAAT	ref_5617_new	10	30	40	24	22	24	43	23	50	20
AAAAGTTTCTGCTCCT	ref_5617_new	18	22	33	23	20	10	28	16	25	21
CATTTGTTGCGTTCGT	ref_5617_new	8	4	7	6	6	4	7	2	8	4
CTTTGCGGTCGTTCTA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GGCTCTGTCGCCATTG	ref_5617_new	1	2	2	2	1	1	0	2	5	6
TCGTAGCTCTCCGGCT	ref_5617_new	65	54	79	60	61	49	90	52	67	56
TATACTCGGCCTAAGA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TGCAACTTTTAAAGTC	ref_5617_new	9	9	8	8	14	9	16	11	15	11
ATTGGGTAGCGGAAGT	ref_5617_new	7	5	6	8	6	4	5	4	9	4
TTACTTTAATCGGATT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TAACACGCCCATGGAG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GTAGGTTTTAGCCTTG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GGTGTCAGGCACTTTG	ref_5617_new	31	45	59	40	67	41	46	42	50	42
TTTTTCCCCATTGCGG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
GCCGGTGTCTTATTAT	ref_5617_new	35	60	57	30	53	32	58	31	47	46
GATCCCAGGGCTATTA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CTGGAATCCAGTACAG	ref_5617_new	58	69	67	66	84	42	90	58	94	66
ACCTCGCGTGATCTCA	ref_5617_new	25	20	22	20	21	14	27	7	26	16
CAGTCCCACGTCGGAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TTCTGTATTCGGTACT	ref_5617_new	26	26	30	30	26	23	38	18	39	14
TGGTCCGCTTGAGAAA	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CGGCCTGAGGGAGATA	ref_5617_new	21	27	28	18	50	32	38	27	32	36
TTATTAGCCTGAGTCG	ref_5617_new	0	0	0	0	0	0	0	0	0	0
ATGGTCAACAAGTTAT	ref_5617_new	104	167	152	145	179	110	153	128	177	105
ATAGAACAGCAATAAG	ref_5617_new	14	27	15	18	37	18	31	15	21	16
TTTCTTTCAATCCGCT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
CTAGGGAACGGATACG	ref_5617_new	25	26	33	24	36	23	35	15	31	30
GCACTCCGCGTCTACT	ref_5617_new	0	0	0	0	0	0	0	0	0	0
ATTACCGCACTCTCTA	ref_5617_new	1	4	2	2	1	1	1	1	2	0
AATCCTCTATTCTAAC	ref_5617_new	0	0	0	0	0	0	0	0	0	0
TTTTGTACTGTAAAAA	ref_5617_new	24	62	38	26	48	27	56	25	48	25
GCCAATTAGGAAAACA	alt_5617_new	33	45	46	42	48	34	57	31	46	27
AAGGTTCATTTGAAGG	alt_5617_new	83	94	87	58	101	56	96	68	101	68
CCAGGTCATAAAGACA	ref_5617_new	163	260	160	162	242	169	273	130	249	137
GTGGAGTCCTTCTGCT	alt_1558_negative	1	5	1	6	7	4	1	5	8	8
GGCCCAGAAAATGGTC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GTGTTTATTTGGGTAG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
CGCGTTGTAGTTGGCC	alt_1558_negative	15	16	8	8	23	9	17	11	10	13
AGGCACAGCCGTCATA	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GATTCGCTAGTCGCCG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GGATCCGTTATCCCCC	alt_1558_negative	3	3	7	2	2	2	2	2	4	5
ATGGCGACACGGGTAA	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
CAATTGGTACATATCA	alt_1558_negative	22	18	20	15	20	19	25	20	28	11
TGTTACGGAAGCCCTA	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GAGGTTGTGCTCATCG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
CAGGCGTTTAATAGTC	alt_1558_negative	10	16	13	20	25	20	23	19	27	17
ATTTAAAGATTCTCTT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TGGGTACTTGCGTTTC	alt_1558_negative	25	36	33	19	34	36	35	24	40	24
TGCTGTCATTTCTGTG	alt_1558_negative	2	2	4	4	5	2	11	1	4	8
TATATTGACCTCATTG	alt_1558_negative	26	40	36	31	43	35	38	39	42	46
TTCCATGACTCTAGGG	alt_1558_negative	19	29	35	24	29	32	35	19	41	24
TTGCGAGTCTGCTTCG	alt_1558_negative	1	0	0	0	0	0	0	0	0	0
GTGTGGCGAAAAAGCA	alt_1558_negative	32	34	34	32	35	37	40	27	43	31
GCGATAACACACCGCT	alt_1558_negative	13	13	12	12	16	5	11	14	11	11
TTGACGGTCCTCTTAG	alt_1558_negative	3	12	3	8	11	1	15	7	6	6
GCTTTTCCATGCCACC	alt_1558_negative	18	21	20	11	15	15	23	14	22	14
AAATTCCTTCGGTCGT	alt_1558_negative	1	1	3	4	0	1	0	2	3	1
TCATTGAGGATTACGG	alt_1558_negative	3	8	4	10	6	4	7	8	6	6
TATAATTCTCTAGTTA	alt_1558_negative	10	24	13	15	20	18	17	7	34	12
AAGAAGCTCTGTCTGC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTAAACTTTTACACCT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TCCAAGCTATGTGAAC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GATCTTGTGAACGGTA	alt_1558_negative	50	62	41	53	61	36	59	46	64	41
GGATGGATAAGTTTGC	alt_1558_negative	7	6	5	4	7	5	5	6	2	9
GCTGGGACAACATCTA	alt_1558_negative	13	16	14	11	20	16	13	14	21	8
CTGTCACAGCTGCGTT	alt_1558_negative	2	5	6	4	4	2	3	3	4	3
GAATTATGAGCGGTCT	alt_1558_negative	8	4	7	2	2	3	5	4	6	1
CGCGTTTTTGTCGCTG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GGAAGGCGAACGATTT	alt_1558_negative	33	51	52	29	66	34	36	27	49	27
TGCTCGCCGATGGCCT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTTTTAGACCCGTAGT	alt_1558_negative	26	36	43	28	28	23	39	25	32	23
ATTTGCGAGGATGTCC	alt_1558_negative	26	34	44	30	44	27	48	31	53	28
ACCTTATTTATCTTAG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
ACTGCAGTCTTCATAC	alt_1558_negative	1	0	0	0	1	0	2	0	0	0
CCAGTATTATGCCCAA	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GCGCATTGTTGGCCCT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTTGTTAACATTGAAG	alt_1558_negative	5	6	8	2	7	7	10	8	3	0
GCGTGACGGCTCGGGT	alt_1558_negative	38	59	53	39	51	46	73	32	52	31
GCTATATGTTATGTCT	alt_1558_negative	30	42	27	24	28	27	29	26	23	18
TTGGTCAAGAGTTAGT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GATCGTGGGGCATACA	alt_1558_negative	1	3	2	4	3	4	4	4	6	2
CCTACGTTGTGTTGCC	alt_1558_negative	9	7	7	8	11	9	10	8	13	3
ACCGGTGAATCATGCC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GAAGCCTTCAACCCTT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GTAAGACCGGACCCCG	alt_1558_negative	6	13	9	13	12	8	10	9	23	8
CAAGTTGTTTTTTACC	alt_1558_negative	5	11	6	5	14	6	17	11	9	8
AGTCGTATCTTATGTG	alt_1558_negative	42	48	59	45	53	29	63	29	71	28
TTTCATCCTCCGATTG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
AGCGAGTTTGACTTGC	alt_1558_negative	20	29	22	24	46	22	38	17	43	11
CACACAGCCCCTGGGG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TGAATCTCGACTGCAC	alt_1558_negative	3	9	6	2	5	3	13	7	7	3
GCCCAGATGTTAGTTT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GCGGTACATGATTGCG	alt_1558_negative	5	5	2	10	6	6	6	9	5	1
CGTTCTATTATTTATC	alt_1558_negative	3	8	3	4	7	1	6	3	10	6
TTGATCCTATTGATAT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
AATCATAGTTCGGATT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
ATGCACCGACCCGTTG	alt_1558_negative	30	49	29	31	70	33	44	28	41	25
ATATTATAGGGGGACG	alt_1558_negative	17	27	24	16	40	18	34	22	27	24
GTAAATAGGGCGTCAT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
AAATCGGACTCCCGCG	alt_1558_negative	14	15	17	3	13	8	7	6	15	1
ATGTTGCAGAAACCAT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TCGGGACTCGTTGTTT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTAATGAAAATAAACG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
AGGCTGTTCCAGTGAT	alt_1558_negative	28	15	27	12	28	22	22	16	40	12
TTGGGGCTTCGACGTC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GTGGCAATTCATGCAA	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TATGCTATGAGCAGGG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTAGTCAGGACATAGT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GTTCGGCCCGAGTGCC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GGGTTTGGAGACTAAC	ref_1558_negative	13	14	7	18	24	13	18	11	17	21
GGGAGTTTACCCGCTC	alt_1558_negative	5	5	3	1	8	1	4	2	10	3
AATTTCTATTACGTCA	ref_1558_negative	34	36	46	26	46	42	44	39	55	29
GGAAGAGGCATAAGTA	alt_1558_negative	4	6	4	8	7	5	9	1	11	5
GTTGTTTATAACCTTG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTTCGTTCTTTTTTGT	alt_1558_negative	11	8	9	5	5	8	6	5	11	4
GTGACAACAATCGGCA	alt_1558_negative	5	18	14	13	19	6	20	12	13	10
TCAACTTTCGTCTCGC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
CAGACCTTGGAAAGAG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GACGCGAACATGGGAT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GATTATAGTCGTGCCT	alt_1558_negative	10	6	21	5	15	11	13	7	16	10
TTGAACCAAAGCGTGT	alt_1558_negative	8	8	19	8	19	14	21	10	18	11
GTTGAGCGGTGTGGCA	alt_1558_negative	5	8	13	6	8	4	3	9	15	2
AGGTTCTGTTCTGGGT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GGCTCACCTTTGCATT	alt_1558_negative	7	17	11	9	17	10	25	7	17	11
CCCTAATTTAACCGGC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TGTTTAGTCAATATCT	alt_1558_negative	18	32	20	28	28	19	20	20	35	25
CTCGCGGCAGCCCTAT	alt_1558_negative	14	11	20	9	19	15	19	14	25	10
GAGACAGATACCTCTC	alt_1558_negative	1	1	2	4	2	1	2	2	3	0
GATGTTTTTGTGTTGA	alt_1558_negative	23	30	25	25	36	31	26	18	30	29
CTAGAGGTCCAGCTAG	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTGGTCATGGCAGATG	alt_1558_negative	4	4	3	3	10	5	8	1	0	4
CCTATCACGCATGGCT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
CACAGTATGCGGGTAT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TAAATAAAGCGGATCC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TTAGTTTCCGTGTGCT	alt_1558_negative	42	61	64	45	70	39	70	45	75	48
CGAACGTCGTCATCGA	alt_1558_negative	2	5	2	0	3	0	2	1	4	3
CAAATTAAACATACAA	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
GCTACCCTACCTTTGA	alt_1558_negative	4	15	11	14	23	9	19	10	22	4
GGTCGAGATTATACGT	alt_1558_negative	13	18	16	13	14	14	18	16	19	14
GTTCCTAAATGTCGTA	alt_1558_negative	55	74	73	47	93	58	74	43	71	46
ACGCGGGACCAGTCAC	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
CCCCGCCACGTGGCCG	alt_1558_negative	7	18	10	10	13	13	14	8	15	5
CCAATAAATACGAATT	alt_1558_negative	0	0	0	0	0	0	0	0	0	0
TGCAGCAATTTCAGCC	alt_1558_negative	33	50	35	29	51	31	54	23	52	26
ACAGGTATGACGCCTA	alt_5838_new	4	8	10	6	15	3	8	2	19	5
TGTTGATGGTATCATA	alt_5838_new	8	14	9	5	8	1	8	5	7	3
TGCTTGAGAACAACGT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TTCTTTTCCGGTTGTC	alt_5838_new	14	12	14	14	19	10	12	13	33	13
GGGAAGTCATGGGTCT	alt_5838_new	23	48	50	26	43	36	66	24	69	26
GCGTACTAATTCAGGC	alt_5838_new	3	18	16	5	18	5	12	6	23	7
TGCTCGTTACCGTTCT	alt_5838_new	38	84	39	29	82	29	66	36	95	21
ACTTTGAGCCGTAGTA	alt_5838_new	48	69	38	35	77	39	82	44	75	34
TTCTATCGAAGTGTTC	alt_5838_new	17	42	22	23	38	17	33	12	55	26
CCTTACGCCTGGGTGC	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TCAAGACCTACTTCAC	alt_5838_new	3	13	6	3	9	6	19	9	11	7
CACTTCAAAGCGCCTG	alt_5838_new	2	10	6	2	12	1	7	7	5	2
CCGGAGCTCAATGCCT	alt_5838_new	5	8	2	8	7	5	8	4	8	3
TGGATGCATGTTCCGT	alt_5838_new	33	68	52	26	71	40	75	33	90	29
GGACGTGGAATTTGAA	alt_5838_new	23	30	20	19	34	22	27	21	40	15
CGTCTATTTTTGGAGC	alt_5838_new	13	36	16	19	38	7	39	15	24	12
GAGCTAGAGCATTACA	alt_5838_new	3	2	2	3	8	2	6	4	6	0
CCCACGCTGATCGCCA	alt_5838_new	21	35	17	18	37	9	39	10	26	5
GGCTACGTATCCTTAT	alt_5838_new	14	27	17	12	25	12	21	15	19	6
TGGTAGTTATTCGGTA	alt_5838_new	9	26	11	11	16	11	19	18	19	11
TGCGTACGTTAAGATG	alt_5838_new	17	33	29	14	40	17	46	24	29	9
CGATCCGTCAAATGAG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CATGTTGGACCACTTA	alt_5838_new	10	20	7	8	24	17	18	9	15	8
GTAAAGCTTGCTTCGA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CAGCATTAACGGGCCA	alt_5838_new	3	1	9	2	4	2	4	4	2	1
GACAATGGGTAGTCGA	ref_5838_new	64	88	60	71	113	46	105	60	124	37
TCTTTAGTTATACAGC	alt_5838_new	21	66	31	26	56	39	42	21	61	28
TTGCGTTTAGTTTCCG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GATCCTGATTGTCTGT	alt_5838_new	20	46	16	19	35	19	43	19	65	17
CTCACTGCTCCCGTCT	alt_5838_new	1	18	3	1	10	1	15	5	18	2
CTAGTTATCGAATATC	alt_5838_new	1	3	2	3	5	1	5	2	4	1
GGCCTTCCCAATAAAA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GCCAGTGTGGAAGCTG	alt_5838_new	7	36	9	6	29	7	40	8	32	6
ACAGGAGTATCTTATG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TTACCTCAGTTCTGAA	alt_5838_new	17	17	16	10	18	14	20	5	30	16
TCATCCCCTCCCTTGG	alt_5838_new	11	30	16	7	31	22	36	16	35	9
AACTACCGCTGTACTA	alt_5838_new	22	33	16	16	47	15	39	21	33	19
GAATGCTATACTTCGT	alt_5838_new	25	62	43	20	60	30	42	32	60	22
ATCGTCAACACTGTGT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TATCTTTGGCTTCCTA	alt_5838_new	8	17	7	10	22	4	19	9	28	5
CCTAATTATTTCGTGC	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TGGTTGAGTCGTATTC	alt_5838_new	10	14	3	8	17	7	15	7	14	5
GTTTGTGGGCAATCCT	alt_5838_new	11	9	10	4	12	7	6	8	6	3
GTGCACGCACCGAACG	alt_5838_new	16	19	12	10	20	11	37	17	23	11
GGATAGTCTGCTGATT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GATTAGAAGTCAGATG	alt_5838_new	11	41	25	8	32	16	29	10	44	16
CACAAATCCCCCCCTA	alt_5838_new	14	41	24	32	38	8	46	18	22	18
GCGGCATTTTTACGCA	alt_5838_new	9	18	12	7	18	8	12	11	7	6
TTGTTGCAGACAGGCC	ref_5838_new	3	16	5	7	14	2	17	9	19	4
TACCTTGTGTGGCTCG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
AGTCTTATTTCAGCCA	alt_5838_new	1	5	1	2	4	1	3	2	2	1
GGGGTCGTCACCTTAG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CTATAGCGTGCTGAAT	ref_5838_new	25	48	25	39	38	21	70	23	62	23
CTCATTATAGCATAAG	alt_5838_new	6	20	9	6	12	5	21	3	23	6
TTGCTGTATACCTATT	alt_5838_new	25	49	33	31	51	29	62	33	56	20
AATTTTGCCTTTTTCT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGTTGTGTTAC	alt_5838_new	94	220	108	75	194	92	190	83	202	76
CTACCCGTCGTTTTGT	alt_5838_new	2	19	2	5	13	1	18	2	20	2
TTCCTGGTGCTTTTGA	alt_5838_new	3	17	3	5	10	5	12	6	10	5
AATTTGCGGGGAAAGC	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TGTACGCTAGCAAAAT	alt_5838_new	11	40	33	17	32	19	32	14	47	14
ATTAGCTTTTCAATCT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CTTTCTTCGTTCTCAC	alt_5838_new	52	107	52	48	102	38	102	38	124	33
TTTTATAATATCCACG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GATGGAACCCAGTGCG	alt_5838_new	6	16	1	7	12	4	13	8	17	3
TGTATAGATCGACTAG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
ACCGCGGCCGGCCCAG	alt_5838_new	14	33	28	29	42	14	36	16	33	21
CTGGTAGGAGTAGCTA	alt_5838_new	8	23	11	7	20	8	25	3	24	4
ACCTTGAGCCGTAGTA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CCGATTACATTGTTAA	alt_5838_new	7	18	5	6	15	6	11	8	13	9
TGGTTTCTCCGCTTTG	alt_5838_new	43	61	50	43	58	44	68	40	70	40
TCACTTATTGCCCCTG	alt_5838_new	14	16	7	4	8	8	8	3	9	9
CGGACTTTCACCCTAA	alt_5838_new	23	43	36	27	57	27	47	32	44	15
TTTAGTTTTTGACCGC	alt_5838_new	7	3	10	8	3	2	1	7	5	8
TCATGCCCTGCCGAAC	alt_5838_new	19	39	8	11	33	11	35	17	45	20
AACAAGTTTTGTCTCT	alt_5838_new	14	29	19	12	40	18	35	12	32	13
TATGTGAGGATTGGCA	alt_5838_new	0	8	2	2	10	3	4	1	4	3
TCAGTGGTCAAATGGT	alt_5838_new	35	67	29	35	75	27	89	28	90	45
GCCAGGCCGATATCGA	alt_5838_new	9	51	17	9	45	4	42	10	46	12
CGGGTGGCGTTGGGCT	alt_5838_new	19	51	24	27	42	29	31	35	51	17
CGCTGTGTACCTATAA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
ATAGCACACCTGCAAG	alt_5838_new	14	18	13	4	26	6	27	12	36	4
TAAAAATTTCGCCGGC	alt_5838_new	22	34	12	19	38	24	43	11	45	14
TTCGGGGTTTCCCGGT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CGCATTGTAGCCATTT	alt_5838_new	4	16	7	10	19	10	15	6	16	7
TTGTTTCGCAGACCAC	alt_5838_new	0	3	3	1	2	0	1	1	4	1
GCCCATTAGTAGCAGC	ref_5838_new	34	88	57	39	88	43	95	40	123	34
GTACCTATTTGGACCG	ref_5838_new	1	2	0	0	2	0	0	0	0	0
ACCATTTGTTTCTGTT	alt_5838_new	24	44	23	20	33	20	62	19	42	20
GTCGTCCGTTAGACTT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GCGAACCGTGATTATA	alt_5838_new	35	94	49	51	90	41	87	31	98	26
ACACCATGCGAATTGT	alt_5838_new	9	17	12	7	12	8	6	5	14	7
CCATTGAAGGACATTT	alt_5838_new	8	26	14	14	31	6	27	13	40	13
TGCTCCCTAATAGTCT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GCCACATTGTGGCGTA	alt_5838_new	2	14	11	4	14	6	23	14	14	10
TCTCTTCGCGTGACTT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CCGTCGCTGACTGTAC	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CTAAATCTAATTAAGG	alt_5838_new	3	18	6	7	14	6	18	5	18	6
CTTGTGTGTTTTCCAC	alt_5838_new	4	11	14	6	14	6	22	3	18	4
ATTAAAAGTGCGACAC	alt_5838_new	0	5	3	3	4	2	8	1	6	2
ATATGTATGGAATCCA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CCAGTTCTATCTTATT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TCTTTGATGATGTAAG	alt_5838_new	26	40	18	21	34	14	32	19	42	6
AACTCCGTTCGATTCG	alt_5838_new	23	39	18	16	38	14	26	10	33	21
GTTAAAGCCTTTGATT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
AACTAGGCAGCGCGGT	alt_5838_new	23	45	26	35	45	30	40	19	53	13
AGCCCGTAGCCGCGCT	alt_5838_new	0	0	1	0	1	0	0	0	0	1
TTCTCGTCATCTTGTT	alt_5838_new	23	46	34	25	69	30	48	21	50	20
GAGTGAGTATGATACT	alt_5838_new	11	24	18	6	30	14	29	5	26	15
ACCGGCGCGCATATTT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CCAGGTGTACTGATTC	alt_5838_new	19	61	23	21	59	15	63	30	53	21
GTAGGGGCCCATTAAA	alt_5838_new	10	16	13	13	36	15	12	10	44	13
GGCGCAAGGTTTCCTA	alt_5838_new	22	35	21	19	27	6	53	23	44	11
GAGCGCTCAGTTCACG	alt_5838_new	0	14	3	2	10	4	6	3	8	3
AACTGTGGGTTATCGT	alt_5838_new	25	62	34	33	100	38	78	31	62	40
TAACCTCACGGTAACC	alt_5838_new	20	56	26	28	48	27	54	24	59	33
TTAGATCTAACGCATA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GGATGCTTCATTGGTT	alt_5838_new	17	34	26	15	29	12	26	12	32	16
ACACCGATCACAAATT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TTATGTAGAGATTTCG	alt_5838_new	19	25	8	8	45	10	36	17	29	10
CAGGCGAATTAGTGTT	alt_5838_new	5	17	3	10	16	3	20	6	13	7
ATATTTCCAATCTAGC	alt_5838_new	27	34	18	39	42	32	45	17	45	13
TTTAACCCAATGTGTG	alt_5838_new	12	55	18	24	74	14	52	13	66	13
CATTACATGTGCCTGA	alt_5838_new	21	61	39	20	48	18	45	23	57	23
CTCTCGTCTGAGGCAT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CCCCTTGCGTGGGTAT	alt_5838_new	16	35	21	9	36	13	23	25	34	17
TGCCGGTACTTTACAA	alt_5838_new	11	37	18	10	17	14	39	13	23	14
AGGTTGAGTCGTATTC	alt_5838_new	0	0	0	0	0	0	0	0	0	0
ATTCGCCTTGGTAGCC	alt_5838_new	82	141	65	60	112	77	120	61	132	56
CAGTAGGGACTCAGCT	alt_5838_new	16	47	31	18	56	18	46	7	31	8
CCACGTGATTCATACA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TAACGATTTCTTATTT	alt_5838_new	7	10	7	7	13	8	16	8	11	8
TTATGCAGGCTGCTAT	alt_5838_new	2	15	14	5	16	8	14	8	16	3
ATGTATCTAAGCAACG	alt_5838_new	4	16	12	7	9	4	9	3	10	5
GATGGGGGGACCGTTT	alt_5838_new	4	8	2	4	6	2	6	2	6	3
CCGGCAGGTGGAAAAA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GGTGAGTTGTTGCGTT	alt_5838_new	16	67	32	17	43	22	37	12	72	14
CAGTGGCCGTATAAAG	alt_5838_new	8	21	14	5	23	2	13	11	15	9
GCATGCAAAAGGGGGG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
ATGCGCACGTGGGTGT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TTCCCTACTGTCCTTG	alt_5838_new	15	20	15	11	35	12	25	14	22	11
TGTCTTTGTGTGGTAA	alt_5838_new	25	42	30	22	50	29	52	20	46	27
GGAAAGTTCACCGTTT	alt_5838_new	31	66	34	27	51	26	72	27	72	26
ATTTGCTCGTTGGTGC	alt_5838_new	45	97	54	50	97	41	108	51	90	60
ACTTCTATGTGGCACT	alt_5838_new	3	4	5	4	4	0	8	3	1	4
TTACAAAATGATACGT	alt_5838_new	6	13	8	6	18	8	20	8	15	7
ATGACTATTATCAATT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TCTGAAAGCACAAACA	ref_5838_new	9	18	6	12	16	8	15	10	25	7
TCCTGAGAGGTACCCG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
AAGGAATAGACCTACT	alt_5838_new	4	12	11	4	9	2	11	7	16	5
CTTAAACGTACCTGTT	alt_5838_new	6	33	2	6	30	4	35	6	28	4
CTTTGAACCTGCTCTT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CACATGTCTGACCGCA	alt_5838_new	7	33	12	3	42	6	28	9	33	10
CAACTTTCTAGATCGA	ref_5838_new	115	239	106	140	257	110	308	90	270	96
CCGGAGCTTTAAGCAA	alt_5838_new	15	44	26	15	45	15	31	18	54	12
TCTACCCGCAAGTGCG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CTTACCAGCGTCTACC	alt_5838_new	6	13	2	3	20	7	12	5	8	3
GCCAACCCCCTAACTC	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TAGTGTACTACTTCAT	alt_5838_new	11	30	15	7	29	15	36	16	24	8
ATTCACCCCTCGTGTA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TCATACCCTTTGGTGT	alt_5838_new	5	14	10	8	17	9	15	5	14	6
TTGTATATCTTCCTCG	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TTCTGTACTCCACGTT	alt_5838_new	9	16	12	3	12	3	12	1	9	13
GATTCGTAACCATGGG	ref_5838_new	30	46	18	13	47	19	38	21	39	11
GTTTTAGATGAACTGC	alt_5838_new	0	0	0	0	0	0	0	0	0	0
CCGTAAACACAATGCT	alt_5838_new	0	0	0	0	0	0	0	0	0	0
GTGCGCCCGCCCCGGC	alt_5838_new	28	41	23	19	64	25	59	20	59	20
CAGCCCATGCTTTAGC	alt_5838_new	5	2	2	3	10	2	11	3	9	5
TCCCTCCTTCCAAAAA	alt_5838_new	14	32	17	9	26	14	37	19	20	15
GATGTCGGTAGGAATA	alt_5838_new	7	15	14	10	25	4	12	9	17	9
GGCTATATGTGAAAGA	alt_5838_new	6	8	8	5	6	3	19	2	15	3
TAGTATGGGCCCACAC	alt_5838_new	15	13	9	5	15	7	15	6	15	12
TAGCTTTGACCCAGCA	alt_5838_new	0	0	0	0	0	0	0	0	0	0
TCTTAGGCCCGAACTG	alt_5838_new	1	3	4	0	1	4	1	1	8	1
TAGGGATAGATGTGTT	alt_60_missing	4	4	2	2	0	2	4	0	3	1
GCCCGCGGCCTTTTAA	alt_60_missing	2	6	6	2	5	1	11	6	4	4
TGTTCGTGGTTCGAAG	alt_60_missing	30	39	31	28	36	21	37	29	39	13
TTTAGACGGACTAAGC	alt_60_missing	40	81	50	45	64	51	75	47	78	53
GCAATGCTCCGGTCGA	alt_60_missing	15	22	25	17	26	12	20	9	15	13
CTGATTGTTCGCACGG	alt_60_missing	0	0	0	0	0	0	0	0	0	0
GGAGCTCGTTTAGTTC	alt_60_missing	23	30	27	23	28	25	31	21	43	17
TTTAGTTTTTTTTCTT	alt_60_missing	14	12	13	10	10	6	17	16	17	9
CCCGGATACGTTAGCC	alt_60_missing	55	47	51	52	65	46	70	41	72	47
TCTTACGACAACTAGC	alt_60_missing	10	11	16	12	16	5	13	9	16	16
CGGAACACTTACGGAA	alt_60_missing	63	86	66	54	82	53	90	49	101	51
GAATTCACTCGTGATA	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CGGACGTGTAGCCAGA	alt_60_missing	36	63	50	40	45	37	46	25	51	25
CTTTACATCGAACCTT	alt_60_missing	17	22	17	21	18	15	20	18	13	21
ATGATTGCGTCTTAAG	alt_60_missing	4	3	3	6	8	1	6	3	8	1
TCTGGAATGATATAAG	alt_60_missing	64	104	63	61	110	63	101	59	115	62
AGCAACGGGGTTGTGG	alt_60_missing	10	5	10	9	6	5	5	3	8	3
TATCAGCGATGTTCTC	alt_60_missing	9	7	12	8	8	5	7	8	7	12
CCCCGAGTCTGAATAC	alt_60_missing	25	38	36	18	51	23	54	20	33	23
ATCCGCCTTAGCCCGC	alt_60_missing	15	16	14	11	24	8	13	19	26	10
TTCCCCATGGACGGAC	alt_60_missing	39	96	41	27	117	41	96	33	93	24
ATATCCCATTGTGTGT	alt_60_missing	22	21	25	15	24	19	33	27	26	29
ACTTATCACTATGACT	alt_60_missing	30	45	38	42	39	26	53	26	46	26
TTTCTCGCCACCGTTT	alt_60_missing	5	12	13	11	16	4	23	6	17	7
CTTCCGCCCTCTCAAC	ref_60_missing	81	75	83	65	74	62	93	47	77	57
TTGTGCTCGCCCATTC	alt_60_missing	16	23	17	21	15	20	18	13	45	13
CATCAAAAGGTATCTT	alt_60_missing	12	12	9	11	13	11	12	11	17	11
GCTCGACGTCGCGGCC	alt_60_missing	27	45	53	32	46	23	56	25	37	19
GGAGTCATTTCCTAGC	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CCCGATAGCTTTAACA	alt_60_missing	5	4	7	6	4	5	6	3	9	1
CTTACTATAATTCCCA	alt_60_missing	0	0	0	0	0	0	0	0	0	0
AATCGACCGCAAGAGG	alt_60_missing	41	79	37	32	70	41	91	34	66	32
GCTGCAGTTCGCCAAA	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CTAGAATAGCATGCTG	alt_60_missing	7	11	7	8	9	5	11	11	9	3
GTGCCTTTCAGTGCGG	alt_60_missing	10	7	18	14	16	9	20	8	20	11
TCACCGACCGAATAGT	alt_60_missing	9	32	15	3	22	14	26	6	29	10
TTAAGGTCATCCCCTC	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CCGGCGACTCGACGGC	alt_60_missing	1	9	5	2	8	3	8	2	14	4
GAAGGGGCCGCAGTGT	alt_60_missing	0	0	0	0	0	0	0	0	0	0
TATTTGATACCACCAA	alt_60_missing	15	35	17	15	19	16	25	11	35	12
GGTGGGTCCCCTTTCA	alt_60_missing	23	37	40	33	24	18	23	27	24	8
TGGCGCACATGCTGAC	alt_60_missing	85	94	105	83	98	64	92	84	136	86
AAGAATGACCCGGGAG	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CCTGTATCAGCTACAT	alt_60_missing	18	39	35	29	78	24	55	30	57	26
GCTTGGGTGATATTTT	alt_60_missing	22	15	32	29	22	18	32	30	26	15
AAGACTCATCTATGCA	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CTCTGCTGTTTGTGGG	alt_60_missing	48	58	56	39	76	30	47	41	66	32
TAACAAGACACACAAC	alt_60_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTTCACGGAATA	alt_60_missing	8	7	8	6	7	7	10	3	6	4
TATGTTTATTGTTACG	alt_60_missing	18	22	18	14	22	13	24	15	28	7
TAGGCCTTGATCTTAA	alt_60_missing	83	87	73	73	98	58	89	39	99	55
GTTTAGTATCGGAGAC	alt_60_missing	31	35	33	32	28	29	42	24	52	33
TTTCACCCGACAGTGA	alt_60_missing	0	0	0	0	0	0	0	0	0	0
TTAACTCGTCTGAATA	alt_60_missing	0	0	0	0	0	0	0	0	0	0
TTACTTACGTCTGACG	alt_60_missing	0	0	0	0	0	0	0	0	0	0
AAACATGGATGTCCGG	alt_60_missing	31	29	36	32	38	31	54	25	28	27
TTCTGTTTCTTATTGC	alt_60_missing	26	31	33	33	37	20	34	21	40	18
AACTCTCGTTTGATCG	alt_60_missing	41	56	39	49	63	41	65	41	50	23
CTCACCTCCATGCCTC	alt_60_missing	0	0	0	0	0	0	0	0	0	0
AGTGTCGCACGCGGTT	alt_60_missing	30	40	44	44	32	32	51	27	43	32
TTTAGGTGTAACGGTA	alt_60_missing	38	69	50	31	69	35	63	43	81	23
GTGTAGCGTTTTTTGA	alt_60_missing	13	25	14	17	28	15	22	8	28	15
GCGCCTAGTATTTTTG	alt_60_missing	107	98	113	95	131	91	123	95	127	97
CTAGTAGTTTATTAGG	alt_60_missing	5	5	2	3	4	2	7	2	8	5
GCTTGTCATCCCTGCA	alt_60_missing	13	24	27	17	24	9	26	12	25	6
ACGTCTTCTGGTTGAC	alt_60_missing	73	115	91	101	153	76	145	91	121	81
TGAATCTTTGCCGCTT	alt_60_missing	31	44	26	21	38	23	33	18	31	16
TCTTTTTCCACGCCTT	alt_60_missing	2	3	1	0	4	3	4	5	7	4
ATGGTTCCGTCAGAAC	alt_60_missing	17	33	30	18	25	18	26	26	33	30
TATTTGGCGTCGTCGG	alt_60_missing	2	14	10	7	9	7	12	6	19	2
ACCCGTTCGAAGGCAG	alt_60_missing	3	7	4	8	8	5	6	3	15	3
GGTATATGCTCACAAC	alt_60_missing	31	44	40	28	31	22	41	29	44	15
CTGAGGTGACCTTATC	alt_60_missing	32	49	28	17	33	27	40	26	43	29
ATCCGACCAATGAGGT	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CTAACGGAATGGCACT	alt_60_missing	13	20	15	21	20	16	27	10	27	13
CCTGAATGTACTCGAG	alt_60_missing	2	0	0	2	2	0	3	2	1	0
ACATCCAGGACACAGA	alt_60_missing	0	0	0	0	0	0	0	0	0	0
CTGTGGCAAGTATTGG	alt_60_missing	11	23	9	18	15	12	16	15	13	7
TCACTGTATTTATTAT	alt_60_missing	40	48	23	18	38	27	47	34	53	30
GGCTCCTCTCGTTCTT	alt_60_missing	74	100	84	86	117	81	123	75	128	72
TTTCCGACACTGTCAA	alt_60_missing	9	13	13	9	19	5	17	6	14	11
GCATCCCTGGCGAGTT	alt_60_missing	10	21	15	17	22	12	22	16	28	7
GTCCCGGATTCGCCTT	alt_60_missing	0	0	0	0	0	0	0	0	0	0
TGATCCTTATCTCTAT	alt_60_missing	0	0	0	0	0	0	0	0	0	0
AACTTAATCGCCTTGG	alt_60_missing	32	64	23	21	74	29	53	35	54	21
TTTGCCGGTTATCGCC	alt_60_missing	32	53	52	29	48	25	44	31	50	18
GTGCTACATACTTGTG	alt_60_missing	14	24	18	7	24	12	14	8	31	7
GTGTTACTTGCGGACC	alt_60_missing	0	0	0	0	0	0	0	0	0	0
TGGCTTTGGTAATGCC	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTGGTTGTATACT	ref_5163_fdr	41	29	40	37	21	37	24	37	9	39
TGGTCTTAGCAAGAAA	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCTTTCGTTTGTC	ref_5163_fdr	5	47	3	2	62	6	63	1	51	2
CAAGACCCATTACGGT	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
CACTCCTTCTAGTAGG	ref_5163_fdr	9	95	16	16	70	13	65	8	87	19
GGAGGAGATCAACTTA	ref_5163_fdr	54	52	55	43	69	46	66	47	77	55
TTAGTACACACTCCAG	ref_5163_fdr	5	18	8	3	14	3	25	4	11	3
GGTCCGTGGAGTTCTT	ref_5163_fdr	20	27	21	30	40	17	28	15	35	18
CTAGCCGCCGTATTTA	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCGCTTGCAAATA	ref_5163_fdr	8	13	14	11	23	7	17	11	16	6
GCAGCATGCGGAATCG	ref_5163_fdr	9	19	21	9	34	15	23	6	33	12
GACTCTTTGACGTTAA	ref_5163_fdr	3	3	9	7	11	6	6	6	13	8
CGAAAGTTGAGCTGTT	ref_5163_fdr	14	18	13	18	20	9	27	10	18	7
TTATGTGATTCAGGCG	ref_5163_fdr	30	43	30	25	38	27	55	16	33	20
ACCACCTGGTTATTAC	alt_5163_fdr	152	181	157	105	180	137	185	118	183	132
CTTCTGGTGGTGGTTT	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
TTCAATGACCGTTTGG	ref_5163_fdr	79	119	101	87	114	78	104	65	102	63
GATGAATCACTCAAGC	ref_5163_fdr	64	73	77	61	77	66	109	43	72	41
CAGTAGTCCCGGAATT	ref_5163_fdr	56	112	85	59	105	51	106	43	94	53
TTTGACTGTAATTATC	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
GGTTGGGATTCTAATT	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGGTCACGTTTGG	ref_5163_fdr	13	25	16	15	24	14	27	19	30	10
ATTGGGATCTGCGTAT	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
CGAATCGTCCCCGCCC	ref_5163_fdr	9	19	13	17	18	9	22	10	17	14
TATCTAAGTAGTCAGA	ref_5163_fdr	29	42	35	30	36	26	50	26	41	32
GCTCGGATTGCTACGT	ref_5163_fdr	17	23	5	17	21	15	14	4	25	8
GCTCTGGGTAACACAC	alt_5163_fdr	118	201	157	112	192	111	162	118	174	93
AAGCTAGCTAAGACGT	ref_5163_fdr	25	35	29	26	47	29	34	23	43	20
GGGGGTCTTTCTAATG	ref_5163_fdr	19	31	25	21	29	22	33	20	17	17
ATCGTCTCTTAGTGTA	ref_5163_fdr	9	34	17	12	28	20	20	17	20	14
CTCAAGGCGCGCCGAA	ref_5163_fdr	34	45	43	19	52	38	45	32	63	34
ACCTCCCGTTATATTA	ref_5163_fdr	5	13	3	3	15	6	9	13	10	7
ATTAACGCTGTGTTTG	ref_5163_fdr	131	175	153	156	180	132	151	146	191	127
AACCATTCTTTAGGGT	ref_5163_fdr	5	11	10	4	16	7	15	4	13	4
GAAGTTCGTTCCTAGA	ref_5163_fdr	27	48	43	29	49	23	54	23	69	32
CACCATGGTTTGACTG	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCAGTATAAGCTG	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
GAGAGCATTTACGACT	ref_5163_fdr	9	23	23	18	16	14	21	15	28	11
GTGTGTCGGATGGATA	ref_5163_fdr	8	9	6	4	9	5	12	6	8	3
CTCCCTATTTGCTCTT	ref_5163_fdr	3	6	9	5	9	2	6	4	5	1
ACCCGACATATTGGGT	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
CGAAAGCGAGGTGGGT	ref_5163_fdr	9	15	18	14	18	10	17	14	15	14
TCCATAGTCTTGGCTC	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGTTGTTTGTATA	ref_5163_fdr	6	15	5	11	6	5	18	4	4	9
TAATGCATTGAGTGCG	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
CTATCGTACAGCCATT	ref_5163_fdr	8	13	9	8	27	12	11	13	17	9
ATACCCTGCTGTGCTT	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
TTATAAGGAGTCTGAC	ref_5163_fdr	4	11	8	4	8	3	11	2	2	3
TCGCCCTTCCCTCTGA	ref_5163_fdr	41	40	57	43	38	28	40	42	48	25
TGGAGGCCTATTTTAT	ref_5163_fdr	6	18	8	13	12	8	12	7	17	5
GTGTTAGCAGGGCCGG	ref_5163_fdr	0	0	0	0	0	0	0	0	0	0
CCCATGCTATGTAGGT	ref_5163_fdr	23	52	44	25	42	26	45	29	55	21
TTTCGTGGGTCAGATT	ref_5163_fdr	46	65	54	38	61	44	68	46	55	44
CCGTTCTATCAACGCC	ref_5163_fdr	5	10	1	4	10	4	13	0	25	3
TCAATTATCGGGGTTA	ref_5163_fdr	6	19	17	6	28	11	18	10	16	6
TAGCGCTGCTACTCAA	ref_5163_fdr	10	17	12	15	17	11	26	9	30	8
CCACTTTCCGCGCTGG	ref_5163_fdr	88	94	91	67	97	56	103	61	100	63
GTGTTTTCTTGATCAT	ref_5163_fdr	7	9	8	7	8	5	14	7	5	14
TTCGCACCTCCTGAGT	ref_5835_new	10	15	14	3	17	8	20	12	12	11
TCATCGTGTATCCGGC	ref_5835_new	20	22	17	12	8	14	15	16	18	11
ATAACTTAACCTAAGG	ref_5835_new	38	75	51	28	73	24	67	43	54	36
CTGAGTGATCGGTACA	ref_5835_new	9	3	7	1	5	3	2	2	3	4
ATGTTGTTGTTCTCTT	ref_5835_new	0	0	0	0	0	0	0	0	0	0
GCCGAAAAATGGTTTG	ref_5835_new	16	23	21	18	10	21	29	11	20	15
CCGGGCTTCCTACTAA	ref_5835_new	24	37	23	24	37	15	28	20	42	20
TTTTTCAACGTGCACT	ref_5835_new	7	4	4	2	10	6	5	7	8	1
CGGCTGTTTAGCTAGG	ref_5835_new	13	21	23	18	20	27	33	16	16	21
AGACATAACACTGCTG	ref_5835_new	0	0	0	0	0	0	0	0	0	0
CTAACAGTCAGATTGA	ref_5835_new	0	0	0	0	0	0	0	0	0	0
GATGCTTCACGCACGG	ref_5835_new	0	3	3	0	0	0	3	1	4	3
CCGGTCACTAGCGCGG	ref_5835_new	3	14	5	7	16	4	12	4	18	9
TCTACATTGCAGCTCT	ref_5835_new	0	0	0	0	0	0	0	0	0	0
TTATCTGTGCGGTCGT	ref_5835_new	15	17	29	20	28	9	32	11	31	21
CGAATCTGGGACACAA	ref_5835_new	6	10	10	7	6	10	17	10	16	7
TGGCGGACACAAACGT	ref_5835_new	2	15	6	8	9	7	12	12	15	4
CGTAGTTGTTTAAGTT	ref_5835_new	0	0	0	0	0	0	0	0	0	0
CTTTTATTCGCGAGAT	alt_5764_new	29	26	36	25	40	30	49	26	43	17
CCATCGCACTCTCTGT	alt_5764_new	20	67	50	25	75	29	68	27	84	27
TAACAACTGTTAATAC	alt_5764_new	254	382	310	284	377	253	398	264	394	238
TCTTACCTGATTAGCG	alt_5764_new	3	19	5	2	30	1	33	4	31	5
AAACGGCCAACTTGGT	alt_5764_new	11	13	13	6	8	14	10	5	14	6
CCCGTGACAGCCCTAA	alt_5764_new	3	2	6	1	5	1	6	5	4	2
TCTCTTTAGTCAGGCT	alt_5764_new	65	85	85	74	85	63	96	69	95	62
ACCAGGAGATCCATTC	alt_5764_new	23	52	28	42	36	22	33	29	52	21
TTCGGGAACTTGTGCA	alt_5764_new	2	7	1	4	10	4	6	5	2	1
CAAGTTATGTCCTGAG	alt_5764_new	85	73	99	71	102	75	116	91	110	73
AGCCATGACTGCGGTG	alt_5764_new	4	10	6	4	2	4	9	2	8	5
TACACACTACCCCGGC	alt_5764_new	4	23	4	5	22	4	23	3	22	1
TTATTTTACTTATGGC	alt_5764_new	0	0	0	0	0	0	0	0	0	0
GGCCACTGCGGATCAT	alt_5764_new	55	83	85	65	96	60	81	63	81	58
CATATGGCTGGCTGCT	alt_5764_new	75	90	111	72	77	70	102	85	111	60
GCCAGAAGCGGATGAT	alt_5764_new	287	335	290	237	335	227	362	241	362	209
AATTCGCATTCCGATT	alt_5764_new	26	36	24	20	27	38	38	17	43	29
GGACCTTCTTGGATCA	alt_5764_new	0	0	0	0	0	0	0	0	0	0
GCCAGTCATTACTCTG	alt_5764_new	24	118	37	35	102	35	119	27	124	28
CTTGCATTTAGAGTCA	alt_5764_new	7	21	11	4	11	3	14	4	11	6
ACAACCCTAAGTACGC	alt_5764_new	26	43	32	32	44	14	48	19	57	18
TGAGTCCCATCGTTTA	alt_5764_new	7	16	18	11	15	4	9	10	15	8
CCCTTATTCGCATTCG	alt_5764_new	57	108	82	61	108	74	113	60	114	46
ATTGCTGACTTTCCAA	alt_5764_new	12	29	32	19	30	15	27	23	33	19
CTTACCTTAGGCGTTA	alt_5764_new	0	0	0	0	0	0	0	0	0	0
ACAAACGGCACCTCTA	alt_5764_new	55	52	79	55	52	56	71	68	87	54
TTTTTGAGGTATTTGT	alt_5764_new	8	9	11	6	6	10	14	6	14	5
CTCTTTACACTCATAA	alt_5764_new	32	38	38	29	45	28	50	24	48	24
TTGCGCTTCGTTGAAT	alt_5764_new	36	42	38	29	57	36	44	41	49	30
AGTGTGCGTCTCAACA	alt_5764_new	15	25	14	6	15	17	18	11	20	8
GCGCCTACCCTCTTAG	alt_5764_new	6	8	3	4	16	5	11	9	14	6
GTATTTGGTTCGTTAG	alt_5764_new	34	73	47	41	51	41	53	31	56	31
CTTTGCGTTAGTGAGC	alt_5764_new	0	0	0	0	0	0	0	0	0	0
CCAGCATTGCGCTATG	alt_5764_new	57	77	50	54	80	42	89	64	124	51
GTTCCCCCATTACCTA	ref_5764_new	55	72	70	56	67	52	71	50	71	41
TACTCCGTGCTTCTGG	alt_5764_new	6	5	4	6	8	3	6	1	16	6
TATCAAAGGCTTCCAC	alt_5764_new	37	50	58	51	53	35	51	35	52	37
AGTATCGATTTCGATG	alt_5764_new	63	75	78	61	87	68	89	65	83	66
TCTTGAAAACTGAGCC	alt_5764_new	26	31	17	20	23	27	41	13	42	23
TTTTGCACATGAAGGC	alt_5764_new	42	49	38	35	45	35	49	46	57	33
GAAACCACTTCCTGCA	alt_5764_new	0	0	0	0	0	0	0	0	0	0
TGCTGAAACTCTATAC	alt_5764_new	19	19	14	18	23	13	23	13	16	9
GCGACCGGCTAGGTAG	alt_5764_new	1	3	7	0	0	0	4	0	3	0
CCTACTTTCTCCATAT	alt_5764_new	125	241	185	154	263	113	277	121	253	111
CATTATAGCTCGAATT	alt_5764_new	27	24	47	25	44	24	36	31	35	37
TCATACGATCGGGGCA	alt_5764_new	47	71	53	38	73	34	74	43	66	39
ACCAGCTTAAATAGGG	alt_5764_new	56	109	120	79	128	63	141	63	129	73
GTAAGAGTTATTTACG	alt_5764_new	33	33	29	13	28	23	29	16	22	17
CGACGGCTCACGATCG	alt_5764_new	0	0	0	0	0	0	0	0	0	0
TTTAAAGTTTAGCCGT	alt_5764_new	6	14	9	15	20	12	11	11	13	7
CGCTTCAATCCCGATG	alt_5764_new	45	57	52	51	53	50	63	44	60	39
CGACGGATTAAACGGC	alt_5764_new	40	38	38	40	34	21	44	28	26	29
CTGTCTATTGTACGCC	alt_5764_new	0	8	6	3	6	1	8	0	3	0
CGATGTCTCAACCTTC	alt_5764_new	43	38	41	39	33	32	40	30	39	39
TTTGGTAGGTACTGGA	alt_5764_new	46	73	69	40	59	43	80	48	56	53
CTTTGTATCACGGTTC	alt_5764_new	0	0	0	0	0	0	0	0	0	0
GGGAGCTGTTGATCGT	alt_5764_new	81	127	86	82	124	76	139	76	115	68
ATGTGGTTATGGTATG	alt_5764_new	17	30	17	18	30	12	21	14	31	13
CGCCGGGCGTAGGGCC	alt_5764_new	20	93	34	26	98	13	92	30	102	32
CTTTCGGCCCGCCGCT	alt_5764_new	57	98	63	67	102	66	109	67	116	69
TGTCAGCCGTGGTGAA	alt_5764_new	5	6	6	13	5	5	9	2	8	2
TTCGAATCTTGGTGCG	alt_5764_new	8	15	15	12	26	8	8	11	12	5
GAGTCTCTTCGTTATG	alt_5764_new	31	48	46	26	48	32	47	26	50	18
GAATGAGTTAACAATT	alt_5764_new	38	37	40	37	31	26	37	29	41	32
ATTGGTTCTTGTCGTG	ref_5764_new	0	0	0	0	0	0	0	0	0	0
GGGCTTCTTTGACTGC	alt_5764_new	43	57	62	40	79	31	75	55	75	30
CCTACTGTAATATCGC	alt_5764_new	0	0	0	0	0	0	0	0	0	0
TATCCAGATAGTATTC	alt_5764_new	0	0	0	0	0	0	0	0	0	0
CCAGCTCCCGTCGCCA	alt_2406_fdr	43	181	47	49	201	22	209	39	180	29
ATGTTGGTTTAGTATA	alt_2406_fdr	22	28	18	17	38	16	35	18	26	19
ATCTGGTCCTCTCATT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAACTTGAAGTTC	alt_2406_fdr	42	30	51	31	53	32	45	48	59	33
ATAGGCCCCAACCAGG	alt_2406_fdr	18	22	26	23	27	14	24	17	36	18
CGCTGGCTCCATTCGA	alt_2406_fdr	12	13	22	8	9	18	16	7	11	9
TCGGTTGTACTGTTAA	alt_2406_fdr	48	60	49	27	51	36	55	31	51	29
CTCAACCTGTGGTTTT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGGCCCGGCTAAA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
AGAGAAAGCATGTTTC	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CGGCGGATTGGACTCA	alt_2406_fdr	32	52	40	37	46	33	32	31	49	30
CTCGTGTACCTGTCGT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGGTCTCTGTAAA	alt_2406_fdr	3	4	9	6	5	9	8	4	7	4
GCCTAGTGCACGCTAG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
GTGAACCGTGTGCTGG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
ATGGATCTCGCTAGAA	alt_2406_fdr	23	34	43	19	29	20	24	36	37	22
CGGCGTCCACAGTGGT	alt_2406_fdr	12	12	9	19	18	4	14	11	21	8
TGTCATGTAAGCGCAC	alt_2406_fdr	99	157	167	116	124	90	193	69	207	88
AAGTCTGCTTTCACTC	alt_2406_fdr	63	83	62	68	68	58	79	61	73	51
CCGGGGTATGGGATTC	alt_2406_fdr	20	35	31	26	31	18	38	31	31	27
TGGTTCTCAGTGCTCG	alt_2406_fdr	29	37	28	17	33	23	28	15	28	26
TGACTTTCGGCAAGTC	alt_2406_fdr	2	6	3	4	2	2	3	1	3	1
GATCTATCATAGAACA	alt_2406_fdr	54	52	56	40	72	44	64	45	68	38
CGCTATATTCGGTTTT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCATAGTCTCTGC	alt_2406_fdr	3	13	7	11	5	14	14	16	8	2
TTAGATACCTGTGCTG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CACCTGGGGTTCTACG	alt_2406_fdr	14	13	7	8	6	7	18	8	9	15
CGGATCAGTGAGTGTG	alt_2406_fdr	4	4	5	3	5	7	7	2	6	6
TTCGCCATCGTATCAA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
AATAATTGACGGCAAT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
GATAGTGTTTTTGATA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCTTTGATCCCTG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAACTCATGGGAG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGTATTACTTTAT	alt_2406_fdr	55	57	39	37	65	39	43	33	48	29
AGCGTGCAGTCTGACG	alt_2406_fdr	39	67	51	58	52	45	74	50	70	47
GGAAGCACTGCGAGAA	alt_2406_fdr	40	66	60	50	59	63	69	45	61	54
TGGCAAATGCCAGGCT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
GGCTACGCTGTAAACA	alt_2406_fdr	3	9	8	11	13	6	7	3	15	3
GGTGCTCGCGGTCCCG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTGCATAACCATG	alt_2406_fdr	53	70	62	41	65	54	84	51	65	55
AGATGAACGTTAAGTC	alt_2406_fdr	30	28	25	23	32	24	21	29	28	26
GCCGCTGTTGTTGTCA	alt_2406_fdr	38	54	55	24	47	38	47	32	46	28
TGAATGTTCTTACACA	alt_2406_fdr	17	10	5	8	10	6	8	3	12	7
TCTGGGACCCTGTTGT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TATTATAATTGGTTTT	alt_2406_fdr	4	15	14	5	11	11	12	14	17	10
TAGGTCTAACCTCGGC	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTTGCCAGAGAGG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAGGCGCATGTTG	alt_2406_fdr	23	28	24	33	27	28	26	15	31	15
AATCGGTGTTGTATTA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCTGCGTCGTTAT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCGCGAACAATC	alt_2406_fdr	37	58	40	31	70	30	51	35	55	22
ATCTGAGCCTTACTCT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGCTGTACTTATC	alt_2406_fdr	2	0	3	0	0	0	0	0	0	0
CATTTGTCTTACTCGG	alt_2406_fdr	19	27	21	16	17	19	23	17	27	8
CATCGAGTTGTGCATA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCGGGGCTCTGA	alt_2406_fdr	13	26	21	17	13	18	13	14	30	23
CGGTTCTCAGACCACT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTATCGCAAGAAG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTGAGTCTGTTTA	alt_2406_fdr	28	30	27	27	61	28	59	27	54	22
TTTACTGCGTATCCGC	alt_2406_fdr	4	6	11	8	14	4	8	1	12	6
TGTCGTGCTTCATTTC	alt_2406_fdr	8	10	11	15	22	17	23	11	19	12
AGAGTACGATTTGGTA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTCTGGTAATTTT	alt_2406_fdr	17	25	33	16	25	34	31	19	23	18
TGTTCTATATACCACT	alt_2406_fdr	10	23	19	10	16	5	19	11	14	14
GGGCGTCAGCCTCAGA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCCTCACCTGCCT	alt_2406_fdr	28	23	36	20	42	22	35	20	31	14
ATAGTTTCCTTCCGTT	alt_2406_fdr	42	52	46	56	48	36	55	51	58	50
CAAATTCTTTAACATG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCGTATCTGCACT	alt_2406_fdr	31	27	21	20	28	19	36	27	25	27
TCATTAGGCTTGGAGC	alt_2406_fdr	8	11	8	7	20	7	7	11	18	10
GACCGTTATAAAGGGC	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
CCGTCCTAACTTACTG	alt_2406_fdr	99	112	102	101	120	100	126	76	158	65
TATTTTGTTAGTAATC	alt_2406_fdr	85	102	90	65	98	72	88	76	113	68
GTTCCACTTGCAAGGC	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
ACCTACTTTTGGGGCC	alt_2406_fdr	1	0	0	1	1	0	0	1	0	0
GAAATGTATTCAGGCT	alt_2406_fdr	79	75	84	55	105	70	101	56	83	56
TTTCGTTTACGCGAGT	alt_2406_fdr	32	38	40	35	24	26	36	38	46	18
CCGCGGGTGGATTCTG	alt_2406_fdr	7	5	9	7	4	6	6	4	4	3
GTTTGTCAGAATCACT	alt_2406_fdr	26	39	42	28	44	29	54	31	37	22
TCAGACCTCGAACTTT	alt_2406_fdr	4	8	6	6	14	7	9	6	9	4
GTGGAAGTGATCAATA	alt_2406_fdr	18	13	17	10	16	14	9	19	23	9
TAACAAGTCCGAGTTG	alt_2406_fdr	6	17	10	9	19	5	8	12	8	11
GATTTCCGAAGACTCT	alt_2406_fdr	78	87	94	55	77	65	96	56	85	63
GCTTTGGGCCATTTTT	alt_2406_fdr	36	65	53	56	74	33	58	25	69	40
TGCACATAGTAATGGC	alt_2406_fdr	37	48	36	31	27	33	38	26	47	32
CGTGAATCGGTTGCAT	alt_2406_fdr	56	66	50	51	52	54	91	38	56	42
GTTCCTGGGGCCTCTC	alt_2406_fdr	7	8	12	5	13	6	18	8	15	9
CAGGTGTCGAAATTGA	alt_2406_fdr	26	21	19	24	24	13	27	20	29	23
AATTGCTATTTGAGAA	alt_2406_fdr	21	22	26	21	19	19	20	13	27	16
CATAGTCGCACGTAAT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTTGTGAGTCAGA	alt_2406_fdr	24	31	47	27	51	25	43	28	48	20
GCGGGCAGGAATTATA	alt_2406_fdr	46	27	46	30	33	34	42	22	48	30
AACTCAGCGCTACACA	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
ACTTAAGTATTCTTGG	alt_2406_fdr	17	18	14	18	25	11	22	13	21	16
CCAACTCCTGTAGATA	alt_2406_fdr	20	78	26	45	81	30	87	31	85	26
CCCTAGTCTGTTGATG	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
TATCCTGGTTATTGGT	alt_2406_fdr	5	4	7	8	3	2	7	5	5	4
GATATCGGACCATCAC	alt_2406_fdr	11	13	29	22	22	15	20	24	19	20
TCTAAGGACTCATGGC	alt_2406_fdr	19	31	24	13	19	20	20	14	28	11
TTTTTACACGTTCCCG	alt_2406_fdr	1	0	0	0	2	0	1	1	0	0
ACTCTCGGCATTAGTC	alt_2406_fdr	8	7	8	6	6	3	10	10	6	2
AGGGGCTGGATCTCTT	alt_2406_fdr	0	0	0	0	0	0	0	0	0	0
ACACGGTTGTCCTGAC	ref_5947_new	69	78	60	40	71	44	69	34	100	44
GACCTCAGTTTGGACT	ref_5947_new	0	0	0	0	0	0	0	0	0	0
ATTTGTTAGTATATAA	ref_5947_new	13	18	18	9	25	11	23	11	27	13
CGTCTCTAGCTGTGGA	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GTGACCTTTCGACCTT	ref_5947_new	0	0	0	0	0	0	0	0	0	0
TTCCGTTTTATCCAGC	ref_5947_new	0	0	0	0	0	0	0	0	0	0
AATGCGTTATGCATGG	ref_5947_new	3	4	2	3	2	4	5	0	5	5
ATTCCCATGTCCGTAC	ref_5947_new	51	79	63	51	68	53	61	40	75	56
GCAGTTTGCAATGGCG	ref_5947_new	16	16	19	13	16	11	10	25	22	10
CTATGCGATACACAGT	ref_5947_new	4	6	11	3	11	0	10	5	6	8
ATATGACCATTCCACA	ref_5947_new	8	18	21	8	20	11	17	6	13	11
CACTCGTTGATTTTGG	ref_5947_new	45	73	72	78	65	45	71	46	87	47
TCAGGATGCAAATAGA	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GATGTACCTCACAAGG	ref_5947_new	9	11	7	8	18	5	6	6	12	7
TCATTTATAATACGTA	ref_5947_new	6	24	2	4	21	7	21	5	22	1
CCTCCTCCATACGTCA	ref_5947_new	0	0	0	0	0	0	0	0	0	0
TGCTCGTTATTAATGG	ref_5947_new	5	8	7	6	3	9	8	5	6	5
TCGTGCCACCTGAACG	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GGGTAGGATTCAATCA	ref_5947_new	21	27	27	13	25	22	28	18	26	13
GGGAATGCATCGCGGT	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GAAGGCTGGGTGCGCC	ref_5947_new	22	43	18	24	46	29	58	33	54	26
TTTTAGCATGGTAATC	ref_5947_new	16	48	23	33	45	22	44	26	43	24
AGACCAATATCGACAC	ref_5947_new	15	43	27	16	33	23	25	29	28	19
CATACCCCGAGATTCC	ref_5947_new	67	94	102	65	102	66	106	88	115	68
AGTGAAAACGGGGCTC	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GGTGGAGACAGGATTG	ref_5947_new	1	8	5	1	11	7	5	0	7	1
TGCATACGATAGTGGT	ref_5947_new	23	29	27	14	33	18	32	15	29	16
ATCACATGCGGTGTTC	ref_5947_new	1	14	6	11	7	8	11	3	6	4
GCAAGGATAAGCTATG	ref_5947_new	2	2	1	7	3	5	4	2	5	2
TTCTTATCGCCGCTAG	ref_5947_new	39	40	29	35	68	18	60	32	57	26
TCAGTTGCCCCGCAGG	ref_5947_new	23	26	17	12	19	19	25	20	25	14
ATCTGGATAGATAGTG	ref_5947_new	0	3	6	2	4	3	3	1	0	1
CCAATTTTCCGCCGCA	ref_5947_new	2	3	1	2	3	1	2	2	5	1
CCTAGCTTTTTCGATG	ref_5947_new	3	22	12	12	26	7	16	13	14	8
ACCTCAACTTGACGGT	ref_5947_new	46	67	64	42	51	40	65	50	53	36
TTTATCAGATGACGAG	ref_5947_new	37	39	42	26	36	33	37	25	36	34
CGTCTCTCCAGTATGT	ref_5947_new	2	2	1	3	5	0	3	2	2	3
TGTATATTCTAGCTGA	ref_5947_new	15	19	21	15	22	11	26	8	17	20
GGGCGACTCTCAATTG	ref_5947_new	63	89	71	69	108	70	97	53	91	74
TGACAGTTTTCTCTCG	ref_5947_new	0	0	0	0	0	0	0	0	0	0
CTATCGAGTCTGAGTG	ref_5947_new	0	0	0	0	0	0	0	0	0	0
ACCTACCACTTTTGTT	ref_5947_new	42	121	54	42	98	45	89	51	101	35
GTGCTGCACATCTACA	ref_5947_new	7	5	9	6	8	5	10	5	10	4
TTCTTAAGCGCGGATA	ref_5947_new	29	33	36	18	42	24	47	26	42	24
CCAGAACATTTGGGTG	ref_5947_new	0	0	0	0	0	0	0	0	0	0
CCATTCTGATACTTCC	ref_5947_new	35	81	51	53	79	34	97	41	111	26
TTACTTAGGTCGGTGG	ref_5947_new	21	33	22	23	40	14	28	17	34	15
TCGTCAGCGGCAATAC	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GTACCCTTATCGACGA	ref_5947_new	25	35	45	24	44	25	51	20	58	23
CGAATTTCTTTGGAGG	ref_5947_new	0	0	0	0	0	0	0	0	0	0
TTGGGGTTTTCTGGAG	ref_5947_new	32	61	37	40	49	35	60	32	59	25
TAATTATGACGTTCCT	ref_5947_new	4	6	4	3	5	9	9	1	12	2
AAGTGCTACATAGCTT	ref_5947_new	89	136	103	85	154	87	126	70	135	64
GTTTGATTCGATGAAC	ref_5947_new	12	23	20	8	14	9	14	11	19	11
TGTCTTTCTTAGACGG	ref_5947_new	7	17	11	7	16	4	11	3	8	3
AGTATCCTTGTCCTCA	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GCACTCATGTACGGCG	ref_5947_new	5	3	4	3	9	1	5	0	2	1
TTGAGCATGTCTCGTA	ref_5947_new	68	56	54	43	60	60	89	31	78	33
GCCACATAGTACATTA	ref_5947_new	21	20	15	16	33	17	17	11	28	14
GATGCTGGATATCCCT	ref_5947_new	0	0	0	0	0	0	0	0	0	0
CACGATCATGGTTCAC	ref_5947_new	0	0	0	0	0	0	0	0	0	0
ACACAGTTGTCCTGAC	ref_5947_new	0	0	0	0	0	0	0	0	0	0
CATGCTCCCAACGAAT	ref_5947_new	9	14	7	12	14	7	13	5	14	5
TTCTACTTGAAAGAAC	ref_5947_new	50	77	53	30	85	35	100	36	76	40
CCAGGACGACAGGTAA	ref_5947_new	45	49	49	44	67	40	53	35	63	39
ATGTAGTTGCTTACTA	ref_5947_new	56	64	50	49	84	41	76	38	88	51
TCCGGATGCCTTCATT	ref_5947_new	11	16	18	13	18	14	24	7	6	8
GGGATAGGTATACAGA	ref_5947_new	238	277	257	233	309	244	343	218	306	187
CTACTCATTTCGATCC	ref_5947_new	16	22	19	30	34	16	36	15	30	23
CGTAGATATCCGGAAC	ref_5947_new	72	98	93	74	101	70	97	73	108	63
GATATTATGTATTGGT	ref_5947_new	1	7	4	4	3	4	7	6	4	2
ATGGGGTATTATTAGG	ref_5947_new	0	0	0	0	0	0	0	0	0	0
GTTAGATGGCTCTGAG	ref_5947_new	0	0	0	0	0	0	0	0	0	0
TCTGAAGTTAGCGCTT	ref_5947_new	3	8	4	4	10	9	10	5	10	4
TTAGTCTCCTTTTTTG	ref_5947_new	22	37	27	18	37	32	48	25	53	23
ACTGCTCTTGAATGAT	ref_5947_new	98	151	129	101	139	97	162	93	162	67
ATCGAAGTTCAGCGTC	ref_5947_new	0	0	0	0	0	0	0	0	0	0
AGCTGCCATGTAACCG	ref_5947_new	0	0	0	0	0	1	0	0	0	0
TTCTCGAAATGTCACC	ref_5947_new	12	25	22	13	31	9	35	10	33	14
GGTAACCACTAACCTC	ref_5947_new	17	18	27	36	18	16	40	21	36	13
GAATTGGTATGGTCAG	ref_5947_new	34	42	27	27	50	17	52	22	46	20
CTCCTTCTATTTGCCG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGGAAGGCCATTGTTT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GCCTAGTATACCATGG	ref_4079_reverse	65	49	74	82	50	78	65	57	75	64
TCAGTTCGCCATGGTT	ref_4079_reverse	20	24	19	36	18	24	25	17	16	17
CGTGTTCTACCGGAAT	alt_4079_reverse	136	81	152	123	87	115	76	145	90	120
TTGTGGACTCTACGCT	alt_4079_reverse	3	6	7	4	1	3	1	2	6	5
CTAGGCCAAAGCGCGC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTAGGAGGGCAGT	alt_4079_reverse	30	35	33	29	19	36	42	25	33	28
ATTCTCCTACCACGTG	alt_4079_reverse	2	4	3	5	8	6	6	2	3	4
TACGCTTGGTAATCCT	alt_4079_reverse	5	3	11	8	6	8	6	8	2	5
GATAAGTCCCCAACCG	alt_4079_reverse	55	32	67	71	37	53	31	51	34	50
AGGTAATTAATGTTGT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TACCAGGCGTCCGCAC	alt_4079_reverse	6	3	15	11	9	6	8	7	5	13
TGCCCAATTGGACGAA	alt_4079_reverse	73	48	91	84	48	77	57	97	58	70
GCCTGGGGCATCAGCC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CATCTCATGTTCTTCA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGCAAAGCTCTCC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GCACCCACTAATCTCG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGTTCGCTAGGTT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTTCCTTGGTCGC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
AATACTCTGCGCCTTA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTGGGTTGTATTT	ref_4079_reverse	161	126	188	182	106	128	134	144	123	164
CTGCCCTCCGACTCAT	alt_4079_reverse	21	11	28	25	17	23	26	17	24	22
GATTCAGCTCGGAGTT	alt_4079_reverse	20	7	22	24	8	14	8	16	5	8
TCCTATACCCAAGGCG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTTTTCCGTTCTG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTCAGGGCTATTT	alt_4079_reverse	27	14	22	10	15	22	23	29	13	15
TTCATCCTGGTTAATC	alt_4079_reverse	51	34	66	47	31	44	34	50	30	28
CTGCAATGTACGGCTC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCCTTGGGCACT	alt_4079_reverse	74	42	76	66	61	65	61	54	60	82
TTTTTACTGTAGGCGT	alt_4079_reverse	12	4	18	11	8	8	6	5	9	7
CATCTGGTTCCTGGTT	alt_4079_reverse	21	14	23	31	18	24	17	22	28	18
TAGTTGACGTAGCTTA	alt_4079_reverse	77	55	103	77	57	55	48	69	51	64
AATTCCCAATATGCAC	alt_4079_reverse	57	27	43	56	38	50	20	41	26	41
GGCCGTACTCTCTGTG	alt_4079_reverse	23	18	15	14	17	11	19	13	11	4
GGTGCTCTTACCCGGT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCGGTAGATGCA	alt_4079_reverse	41	16	49	36	15	35	20	39	17	36
TCCGGTAGCATTTGGT	alt_4079_reverse	47	59	60	57	41	49	45	51	57	34
AGTGCTCGTGTGCGAT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GAGAATGCTAACGCGT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTTCACCACCGTTCTG	alt_4079_reverse	18	19	22	19	15	23	16	31	25	18
CTGCACGTATTTGGAG	alt_4079_reverse	102	92	114	112	71	102	94	121	93	83
CGGTACTAATTCCCAG	alt_4079_reverse	127	86	103	104	79	99	83	94	73	111
CTAACTTTATTGGATA	ref_4079_reverse	370	261	475	397	280	384	293	325	268	326
GCCCTACGCACCGCTG	alt_4079_reverse	43	14	49	29	16	24	20	44	25	23
TCAAAGACGAACTTCC	alt_4079_reverse	107	46	123	99	56	77	58	58	58	94
GCTTTAATTTCATCGT	alt_4079_reverse	83	72	132	111	70	109	82	90	89	89
CTATATGCCGGGATTA	alt_4079_reverse	53	38	62	55	35	49	44	49	41	48
AGCCCATGGTCGTTCC	alt_4079_reverse	55	81	58	55	71	65	68	50	79	52
CCATACTCTACCATGG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTTATACTAAGGT	alt_4079_reverse	109	59	119	102	48	87	62	73	61	92
CACCGCATGATTTGCA	alt_4079_reverse	20	9	11	8	11	11	9	12	6	5
TTGAGTTGTTCTTAGT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTACGTAGCACTGTTA	alt_4079_reverse	18	25	21	14	23	16	18	15	28	24
CTAACGATCGTATGGT	alt_4079_reverse	6	9	12	5	7	13	5	11	3	10
CATTTCTGGTGGCTCG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTCCACTGTAGGCTAA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGATACACTATTT	alt_4079_reverse	54	35	59	46	31	40	27	38	39	36
CATATCGTACGTGGGA	alt_4079_reverse	87	82	121	97	79	90	73	94	75	74
CCCTGGCGTAACCCGG	alt_4079_reverse	62	42	85	69	42	59	39	59	34	71
TATAAGTGTCGGGTCT	alt_4079_reverse	67	35	51	55	50	37	27	38	46	40
TGGCCCGCTCGCTCAG	alt_4079_reverse	19	23	31	34	17	18	10	26	17	28
TTCGCCCCCGTCTGTT	alt_4079_reverse	35	105	57	46	97	36	115	48	116	33
TTACCTGTAGTGGACA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TAACGTTGGGATTTCC	alt_4079_reverse	35	21	36	46	23	32	27	30	15	32
AGAATTTGTGTCTAGG	alt_4079_reverse	13	6	19	18	9	11	5	6	3	5
GTCTTAGTCATTGTTA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGTTTGATTTAGT	alt_4079_reverse	6	4	9	7	5	3	9	5	10	3
TGTACTGACCGAGTTG	alt_4079_reverse	23	20	17	23	23	22	13	16	23	24
CTCAGCTTTGAGGCGT	alt_4079_reverse	70	36	68	59	36	47	42	51	44	51
CTTTCCGTGATAACTA	alt_4079_reverse	16	13	11	15	8	16	9	14	11	18
GCCACTAGTCATACCT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCTCCGCCCTGTT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAACATTAAATCC	alt_4079_reverse	236	154	304	295	180	223	154	267	180	218
ACACCTTACATTACTG	alt_4079_reverse	27	13	26	23	23	20	16	24	21	21
TCATGTTGGTTGCTGT	alt_4079_reverse	80	31	91	82	42	58	40	80	49	57
CCTATTGTCTTAAATT	alt_4079_reverse	125	66	118	108	72	94	85	98	66	100
GATTAGTTCCTTTCAT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTCTGCCCAATTC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TATGCTCTGACCTATG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGTAAGTGCTGAT	alt_4079_reverse	30	28	38	24	25	24	25	24	26	20
ATTGGTAGGGATAGTG	alt_4079_reverse	21	6	12	15	15	15	17	11	7	13
GAGGCCATTAGCAAAC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTTGAACATGTT	alt_4079_reverse	25	16	50	31	16	26	18	24	22	28
ATGCAGCGTCGTTCCC	alt_4079_reverse	36	17	30	27	19	24	21	25	24	22
GACACTGCAGCTCTCA	alt_4079_reverse	18	9	24	32	10	25	16	15	25	29
TTACATGCAACTTCTC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
ACGATTGAGGTGCAAC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CCTATGTTTCACCGCC	alt_4079_reverse	126	80	138	111	82	108	42	102	62	91
AAATGTAATAGTACTG	alt_4079_reverse	63	31	54	54	34	56	50	53	43	49
GGGCGACTACAAGCTG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTCAGTTCGCCGT	alt_4079_reverse	101	50	98	84	51	87	51	79	58	65
ACTCTTATTAAGTCAG	alt_4079_reverse	9	9	12	21	6	14	8	11	8	15
CCGTTATATGACATTT	alt_4079_reverse	31	10	38	22	26	33	21	23	25	28
AGTTTGGCGACCAGTT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCCGGGGCGTGG	ref_4079_reverse	11	15	13	10	5	8	7	8	4	6
TCTTTTCGACTGAATT	alt_4079_reverse	61	50	63	70	39	75	44	51	50	53
GTATGCCGCCCGTTCC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGTGCTCAGTAGC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGAGGGCATTCCA	alt_4079_reverse	59	34	87	45	35	59	50	56	46	42
AGGTTTGTCGCTACCA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGCCCGCAAACCG	alt_4079_reverse	53	53	84	81	52	71	58	61	60	66
GACTGGACCTACCTTG	alt_4079_reverse	17	69	20	33	64	19	54	12	82	9
ATGTATTTTCCCTTGC	ref_4079_reverse	178	126	252	220	122	187	136	184	143	185
GTATGGATAGTTCCTG	alt_4079_reverse	59	31	56	68	39	58	33	48	27	38
TATTTTCCTCGACTAT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGCATATTTGCTAAGT	alt_4079_reverse	129	84	146	116	72	131	79	104	84	113
TGCATATGCTTGGCCG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGTTGCAAGAGCA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CAGGTCATTAGCCTAC	alt_4079_reverse	30	31	45	22	28	44	25	33	32	24
AGGCACTTTCCTTTAC	alt_4079_reverse	33	13	21	20	10	12	11	25	12	16
TGTTTTCTTATCTAGA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CAGGTCTTATAAAGGT	alt_4079_reverse	84	80	133	106	89	104	120	112	110	99
CTTTGAAACATCTGCC	alt_4079_reverse	62	64	95	96	78	99	77	77	72	71
CAAGCTTCCCGGTTTG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTTAGTGTCTCTA	alt_4079_reverse	5	4	17	6	6	11	4	14	7	5
CCAAACTCGTACAGCA	alt_4079_reverse	12	6	7	16	5	8	9	17	7	11
CAAGAGGCACATATAT	alt_4079_reverse	4	2	3	2	3	4	4	1	6	3
ACTTCCATGGCGATCA	alt_4079_reverse	207	133	264	217	132	227	121	235	112	200
ATTATATCTGTTTGCA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTTGCCGATTTGC	alt_4079_reverse	31	19	25	15	13	14	20	20	19	26
GCAAGCCTTTGTTCAC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGAACGCAAGGTTGAT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTATTAGCGTGTGTTA	alt_4079_reverse	38	23	50	25	22	42	21	38	22	26
TTTCGTGAAGTACTGT	alt_4079_reverse	0	2	2	0	0	2	0	0	0	0
CTAAGACGTCGGACTG	alt_4079_reverse	24	15	18	16	13	16	11	24	24	11
CAGTTACGGTATAGGC	alt_4079_reverse	77	64	105	68	63	78	64	79	61	84
TACTCGATAGCGTGGC	alt_4079_reverse	9	9	11	6	5	7	5	4	9	15
ATGATTTCTTCCAATG	alt_4079_reverse	210	128	306	256	140	243	142	190	144	204
CGTTGTTTGCGTAATG	alt_4079_reverse	43	19	37	34	17	36	19	34	15	18
TAACAACTACAGGGGC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCTTGTCACGCGC	alt_4079_reverse	220	145	252	248	125	205	145	190	151	179
ACTAAAGTTATCCACT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGGTTTCCTTTAG	alt_4079_reverse	6	5	5	2	2	3	3	2	3	4
TGATACCTTTAGTGGC	alt_4079_reverse	33	31	51	49	18	50	36	45	30	44
CCCCCGGCCACATACA	alt_4079_reverse	10	26	22	13	21	15	31	10	12	15
TAGACCGTTGGTTCGT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CACCTTGTGAGTCGCG	alt_4079_reverse	31	21	31	23	14	28	20	23	24	15
GTGGGCGCCCGACAAG	alt_4079_reverse	25	22	38	32	26	18	17	18	17	22
CGTATCCGCACCGTCA	alt_4079_reverse	173	99	233	148	89	121	95	131	101	168
TTGGCTTCCAAGTGAC	alt_4079_reverse	113	58	144	93	64	65	64	87	75	72
CTACTCCCTAGATTAA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCGGTCAGGAAAC	alt_4079_reverse	17	23	29	24	12	20	25	18	15	21
TCACCATAACGCGCTC	alt_4079_reverse	40	33	55	37	26	42	33	30	39	35
AGTCCTACCGATTTCG	alt_4079_reverse	1	1	7	4	2	5	3	6	6	5
CTTAACCCATGCCTTC	alt_4079_reverse	68	42	68	58	37	45	42	56	52	50
CATCTCAGAACAGCTC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGTTCCTTGTACA	alt_4079_reverse	2	0	2	0	0	0	0	0	4	1
AGTCTTCATGTGATGC	alt_4079_reverse	107	112	149	114	109	130	107	128	107	91
ACTAATAGTATTTGGA	ref_4079_reverse	203	155	191	201	139	177	162	187	166	174
TTCGTTCCATTGCATT	alt_4079_reverse	75	47	90	63	52	78	46	57	52	76
TACGGCCGTTAGCTCA	alt_4079_reverse	13	11	21	18	16	10	19	14	13	12
TCGGGACATGAGACGT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGTTTGCCCTTTG	alt_4079_reverse	30	23	25	11	18	16	13	20	16	11
TGTAGGGAAAATTCTG	alt_4079_reverse	45	31	49	44	41	42	29	36	46	43
TTGAGTGGTATTAAAA	alt_4079_reverse	140	108	192	143	119	168	101	161	115	125
AAACACGATGTTGCGG	alt_4079_reverse	44	25	38	44	26	24	19	40	16	31
ACCCTCCCCGCGGCTC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGCATAGCTGAAC	alt_4079_reverse	49	37	55	43	32	32	35	36	59	34
TAATGCCCGCTTCACC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
GATAGCCAGCAAATCA	alt_4079_reverse	167	119	216	181	130	150	88	159	106	142
GATGGTTCTAGGTTGC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTATTATACCGAATCT	alt_4079_reverse	13	13	17	15	15	14	7	9	17	14
ATTTTGTGCGTGCTAT	alt_4079_reverse	94	72	94	103	95	82	87	97	68	89
TCGGTAGGAAACATAT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CATTGCATACACCAGC	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAAAGCATGAATG	alt_4079_reverse	131	94	134	121	79	113	89	112	85	121
AACGATCAATATTTTG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATAAAATTTTGTACTC	alt_4079_reverse	33	21	25	37	19	28	22	25	16	24
CCCTTCAGTTCAACTG	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CATGCCCAATATCCTA	alt_4079_reverse	150	113	177	145	99	143	111	139	136	126
GTGGGCCTTAGTCTGG	alt_4079_reverse	10	8	7	17	10	21	10	10	14	7
TGCCCCAAGTTAATGT	alt_4079_reverse	19	6	17	16	6	10	4	11	12	9
CCGGAAGCTCCTCAAT	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTCCCAGGGACGC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTGGGATTTCCGA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCGCGCCTTAGTA	alt_4079_reverse	101	99	100	109	45	96	74	113	80	101
TAACTAAAATCGGTTT	alt_4079_reverse	17	4	20	19	13	12	12	13	19	12
CCGTTACTGATCGATA	alt_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATTGACTTACTACTGC	alt_4079_reverse	29	22	37	33	28	31	22	31	28	29
CGCCAAGGCTTGCGCG	alt_4079_reverse	13	7	16	18	14	16	7	18	14	23
TTGGAGCGCGGTTAGA	alt_4079_reverse	59	32	52	43	29	44	20	43	33	54
CGCTATGTTATCAGGG	alt_4079_reverse	204	101	224	215	118	196	132	196	112	180
AAGCTGGATGGTCATC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TATGGTAGTAGGTGAA	alt_6042_new	58	18	71	57	24	54	25	63	33	48
AGAGCCCAGGCTTCTC	alt_6042_new	80	42	104	111	56	78	59	98	39	92
GAGTTGCGCTTCCACC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TCAGACGATGATGGGT	alt_6042_new	112	56	114	104	38	105	37	101	62	93
TTTACGATAGTATGTT	alt_6042_new	3	2	3	4	2	3	1	3	1	3
ACAGGCAAAGGCAGAC	alt_6042_new	277	107	316	277	117	249	122	231	122	199
ATGTGCGCGTGTAATC	alt_6042_new	108	53	140	126	58	117	64	127	69	91
CATTAGATAGTTTCAT	alt_6042_new	10	1	17	10	4	9	2	10	3	15
ATCAATGGCCCGTAAC	alt_6042_new	116	32	156	172	54	158	48	117	60	111
CCTCCTGTGTATAATC	alt_6042_new	3	0	1	2	2	0	1	2	1	1
GTAACCTAGGCCCCCC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GCTAAGTGTGTCACCG	alt_6042_new	110	72	105	121	46	88	48	97	61	94
TACTATCTTGAAGGGC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TATGTGCCTATTTATT	alt_6042_new	14	9	22	8	5	9	4	11	3	11
AGGCAAGGGTCGATAC	alt_6042_new	280	118	341	280	110	283	157	305	147	231
CGGAGTGTCGAGACAG	alt_6042_new	145	67	193	162	67	145	71	150	52	126
TCATGCCGTTCCATGG	alt_6042_new	59	47	92	73	47	80	47	56	37	57
TCGTAGGCGAAAGAAT	alt_6042_new	151	77	160	162	71	153	83	142	78	121
CCGTAGAATGGTTATT	alt_6042_new	118	64	135	106	69	106	81	107	69	111
CGTGCACCAAATGTTG	alt_6042_new	21	12	38	21	14	25	18	17	19	36
CCTCTGACTGTGCCCA	alt_6042_new	24	49	28	38	38	28	50	24	44	25
TCAATTAACCCCGCTC	alt_6042_new	24	19	35	36	19	30	15	49	12	22
TGATACACGGGGCTTT	alt_6042_new	211	79	252	200	94	189	77	179	90	147
GATTTGCCTATAGGTA	alt_6042_new	0	0	0	0	0	0	0	0	0	0
AACATCTGCTATATCG	alt_6042_new	42	23	56	54	23	40	30	38	19	39
TGGTATCGCCTCCGAC	alt_6042_new	98	47	122	102	29	132	45	105	56	105
GGTCTAAGCAGTTCAT	alt_6042_new	68	23	86	59	27	53	31	63	30	46
AACATTATGGAAAACA	alt_6042_new	103	48	147	121	56	122	56	118	60	112
GCCGCGAATCCATGGG	alt_6042_new	460	184	531	470	173	405	185	379	193	394
CGCCACTGGAGACTTT	alt_6042_new	160	54	165	139	68	116	70	151	69	98
ACCGTACTATGCAACG	alt_6042_new	163	93	197	197	84	157	86	172	85	141
GTACTAATTCGCTGTT	alt_6042_new	30	9	56	62	22	38	19	39	16	50
CAGGAGTACACACAAT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ACCCACACGCCCATGC	alt_6042_new	150	83	193	173	85	163	88	105	82	147
GTCTACGGGGAGTTGG	alt_6042_new	146	50	177	147	70	125	73	145	79	128
TCCGCTCTTGTGTAAC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GCGGTGTGCTTCCAGT	alt_6042_new	86	52	100	99	28	92	48	71	34	101
TTCGTCTCATCTCTAG	alt_6042_new	59	29	74	56	32	60	46	55	35	37
CCTGGACCGATCCTGT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ACCCAGTACGGTTCGT	alt_6042_new	190	66	196	177	82	158	76	147	89	137
TCAGCGGTACCGCGAT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
AGGGTCGGCCTCCCTG	alt_6042_new	57	41	62	70	34	54	45	56	42	48
GCTCAGAGGTGTAATG	alt_6042_new	97	45	142	93	47	70	53	97	59	98
CCTAGCTCATTTAGGA	alt_6042_new	19	10	38	27	14	22	9	31	16	18
ACCTGGATGTGCTAAA	alt_6042_new	48	51	56	36	70	44	50	40	65	36
TGCTCAGATACAATCC	alt_6042_new	99	68	122	124	66	93	80	101	59	83
GTTTAAAAGGGGTATG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GGGCCATATTGGCCAA	alt_6042_new	29	8	25	33	18	22	16	22	18	22
GAGTGCTTGCCCTGTT	alt_6042_new	73	35	77	72	40	68	20	65	30	52
TGTAACCCGCACGGTG	alt_6042_new	72	34	95	88	47	77	34	84	48	60
TTGTCATCCGGCGTGA	alt_6042_new	23	12	29	28	6	27	7	17	8	23
CTTGGTTCAACACCTA	alt_6042_new	50	24	48	39	10	27	22	18	26	28
TGGCGGTTGGCCAACG	alt_6042_new	39	11	42	39	15	40	14	42	15	22
CAGCTAGAGACAGATT	alt_6042_new	22	15	34	37	18	30	17	28	12	27
CACCGGCACTCAGTAG	alt_6042_new	0	0	0	1	0	0	0	0	0	0
GCGTATAATTCCGTCG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GCCAGATCCAGAAGAG	alt_6042_new	9	5	13	9	4	12	11	10	9	13
TTCATTATTCGTCATA	alt_6042_new	109	47	123	132	47	88	60	100	57	80
AACCGATGTCCTGCGA	alt_6042_new	153	102	146	124	118	105	101	121	101	105
GTATGGGTGTAGCGCT	alt_6042_new	48	15	60	61	42	50	28	49	28	48
TTCCATCGGGCTCGCT	alt_6042_new	102	43	123	134	54	90	46	114	56	78
GGGGATCGTTTTGGGA	alt_6042_new	255	112	336	284	106	289	111	245	110	252
CATTCGTAATCTCTTA	alt_6042_new	502	218	555	530	206	477	219	497	213	382
TCGGCTAAATTTGCTC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CTGTTTTTTGCGTAAT	alt_6042_new	15	8	22	21	8	17	14	16	15	14
ATTGTTCTTAAATATT	alt_6042_new	53	28	60	60	33	52	30	39	32	57
TCTCCACAATTTGTCA	alt_6042_new	48	20	50	41	18	42	17	43	23	27
TGCATAAGACCATCCT	alt_6042_new	130	41	181	138	54	155	80	137	65	114
CATTGTTATGCTAGTC	alt_6042_new	9	4	17	15	9	15	9	11	7	18
TGTACTGTCTTTGGTA	alt_6042_new	47	14	52	56	30	47	20	60	25	43
CCAACGTGTTTAAGCC	alt_6042_new	4	2	9	4	3	6	4	8	2	4
TTTCTAGTGTGTCGGT	alt_6042_new	183	75	199	193	79	153	82	183	87	146
CCTGTTTACGCCTTGA	alt_6042_new	39	35	47	45	21	49	37	41	21	37
GCTCTTATCGTTTTGC	alt_6042_new	20	17	21	31	11	17	7	21	18	20
GTTCGATCGTCCGGGT	alt_6042_new	28	11	32	24	10	23	12	21	14	21
TAAATGCATGAGCATA	alt_6042_new	166	80	240	179	91	196	96	184	92	158
GGCGTTCCACGAGCAC	alt_6042_new	117	58	161	106	56	88	67	96	54	105
ACTATAAGACCAATGT	alt_6042_new	96	52	138	142	69	89	68	117	89	85
CGGGTCAAGCGCCCTT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GTCTCACGATGCCCAA	alt_6042_new	76	41	91	89	29	60	46	45	43	71
CAGATAGGGTGGACTT	alt_6042_new	21	17	29	39	20	23	13	33	15	13
GGGTTATGTTCATGAG	alt_6042_new	302	146	422	334	169	310	145	332	167	320
GGGTCATGGAGTAACT	alt_6042_new	116	62	145	128	64	112	61	119	41	122
AGTTGGTCACGACTGA	alt_6042_new	107	54	131	127	58	101	54	124	57	107
TCGGGCGTGTCTATTT	alt_6042_new	88	44	111	81	30	104	51	77	54	74
GCGCTTTCCCTCCTTT	alt_6042_new	96	62	121	124	68	107	58	131	73	93
TCATCTTTCTAGTAGT	alt_6042_new	90	31	102	82	43	79	37	74	42	57
ATGTGCTTGATTCTGC	alt_6042_new	35	21	51	52	21	54	14	37	19	48
AACACTCAAATAGGTT	alt_6042_new	44	29	64	66	14	50	26	60	32	47
TTCCTACCTTCTTCAT	alt_6042_new	54	24	88	85	36	50	29	57	38	60
TTTAAGGGATTACTCT	alt_6042_new	2	3	11	9	3	11	6	12	6	9
GGAATTGTACTAACGG	alt_6042_new	214	103	267	231	79	211	105	176	118	188
CTTGCGTATCCGTCCT	alt_6042_new	59	31	73	68	27	56	27	56	26	60
CCGACCGCCACTATCT	alt_6042_new	43	8	46	34	13	39	23	49	9	50
CAGCACGGTTGCTTGA	alt_6042_new	85	57	100	91	58	86	57	93	49	69
TTTTATGACCTTGTAC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GCTGTTGTATAATTAG	alt_6042_new	29	21	36	30	19	28	22	42	18	34
ATCTGTGATGACTCCC	alt_6042_new	1	25	2	0	14	2	17	1	21	1
AATGACTTACTCCTGT	alt_6042_new	38	23	41	38	20	30	13	32	12	24
GGTACGCGAGCTGTCT	alt_6042_new	18	7	37	18	16	24	10	16	10	22
CTTCCGTATTTTCGGC	alt_6042_new	133	57	163	138	64	130	47	107	52	115
TGTATCAGTCGTTACC	alt_6042_new	65	57	102	84	39	71	45	76	43	60
TTACTAATTTAGGTCC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CCCCATCCATTGTACG	alt_6042_new	34	39	64	46	44	36	40	40	47	47
CTACGTAACTCCGTAG	alt_6042_new	86	38	99	99	44	81	42	88	37	70
CAGGTGAGAGTTGTCC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GATTTATCGATAATAC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TGTAGGTCTGCACAGC	alt_6042_new	157	71	238	196	72	173	96	161	111	158
TCTCTTGTGTTGTTTT	alt_6042_new	54	21	62	54	24	46	24	58	25	41
CCTCAGCCCGGTCTCG	alt_6042_new	0	2	4	2	3	2	0	1	3	2
GAGTGGGTTTAGATTA	alt_6042_new	100	44	118	103	53	94	60	98	48	89
CTAGTGTGACCGTTAA	alt_6042_new	65	37	76	45	30	30	37	54	34	46
TTACCAAGGTAGGATC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ATTTCGTGCGACTTTT	alt_6042_new	38	17	50	47	13	37	16	40	22	35
TTAAAGCCCACTATCC	alt_6042_new	348	162	442	357	163	304	190	325	178	319
TCACACGCATCCAGAC	alt_6042_new	8	8	15	10	10	8	2	14	3	11
CATCCGGGTCGTTAGG	alt_6042_new	47	18	27	31	18	39	8	29	17	35
CATAATTGTGATCTGC	alt_6042_new	9	3	8	6	5	10	4	6	3	12
TCAGTACCGGCCATAA	alt_6042_new	15	9	21	15	16	13	7	21	14	21
TTTTTCAAGTTTGTCT	alt_6042_new	275	119	332	322	166	256	153	281	155	233
TGCACTCGCCACTTTG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TCGTTATGGTCGACTT	alt_6042_new	24	10	16	20	6	20	13	10	13	16
GTGATACAATTTTCTA	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TAGTTCACTGAAATGG	alt_6042_new	53	17	58	48	27	40	15	56	16	32
ATTGCGCCTTTGCCTT	alt_6042_new	168	100	209	159	95	149	85	146	105	137
ACTTTAGTCAAGGGTA	alt_6042_new	30	12	29	37	12	24	13	28	17	14
TTTCGGTTTGGTATCT	alt_6042_new	247	82	245	249	103	218	81	229	125	214
ATTCATCCGCAGCAAG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TTTACTCATATTGTAA	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ACTGCTTCCCCTATCC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ACTCCGGGGTCAACCC	alt_6042_new	25	15	34	28	14	25	11	23	11	15
GTGGTAGTTAGTTTTT	alt_6042_new	86	34	101	80	43	97	49	96	39	81
TTTACCGACGGGATTG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
AAATTGTTTTTGTATT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
AAACATATCTATAGCT	alt_6042_new	1	5	1	7	0	5	3	7	1	5
CTCAGCCTCTTTCAGG	alt_6042_new	4	49	7	6	35	5	40	9	48	12
AGTGGTTTACAGACCG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ACGTTCGCACCCAGCT	alt_6042_new	133	69	193	182	82	144	66	160	66	168
ATATCTTCCTCTTTTG	alt_6042_new	66	46	81	75	28	80	44	57	27	62
ATCCATCCTTAATAGT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TTCGCTCTTCTCTCGG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CTTCAACACTACTACG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GCTCCCTTCTCTCTCG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TTGACGCGGCTGACGT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ACCTTTAGGCTTAAAT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GAACGTCTGGGATACA	alt_6042_new	34	22	35	31	13	27	19	43	28	29
GTGGCTCCTGTTTCTC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CCGCCAGCGGTCATAT	alt_6042_new	92	65	132	96	70	94	71	85	87	72
TATGAACATGGGCATC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GTCTACGGTATCACGG	alt_6042_new	20	9	19	26	8	25	13	17	11	25
ACTTGATACCTTAGTG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TTAACCCTCGGTCAGT	alt_6042_new	40	19	50	28	16	47	23	21	22	13
AAAGCCTGTACGACTT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GACTGACCCGATTCAG	alt_6042_new	53	22	85	64	33	64	39	60	42	60
TTTCTGTGCTAAATCT	alt_6042_new	34	13	43	34	15	37	14	38	13	29
TAAGACTGCGTCATTG	alt_6042_new	134	65	173	126	57	126	62	116	78	109
CCCTCGTTTCAGATGG	alt_6042_new	9	5	11	3	4	5	7	7	1	6
AATTCTAGATGACATT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CCTCATTTTGTTTGCT	alt_6042_new	52	14	67	51	37	49	16	41	27	38
CCGCCGTGTAGCATCA	alt_6042_new	0	1	2	1	0	0	0	0	2	0
AGCACGATACGACCAG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TATTGGCGGTAACCAA	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TTTTTGGCCAACCCTA	alt_6042_new	28	7	33	19	11	19	9	15	18	20
GTGAAGCATTCGTCCA	alt_6042_new	58	28	87	78	31	66	26	61	38	59
TAATTTACATGTCCAG	alt_6042_new	161	70	168	157	77	123	68	143	65	121
TAGCTGACCCGTTTAC	alt_6042_new	35	17	60	39	14	49	19	33	20	26
CTTCGTAGTGCACTTA	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CGTTGTGGCACTTATA	alt_6042_new	78	36	75	57	29	43	39	51	29	53
TCCGGTGCCTAACGCC	alt_6042_new	3	5	2	5	5	2	4	6	0	3
CAGTCGTCTCAAGGCC	alt_6042_new	11	21	22	9	13	13	12	11	15	14
AGACCAAGAAATACGG	alt_6042_new	0	0	0	0	0	0	0	0	0	0
ATAAGCATGGTTTGAA	alt_6042_new	18	7	28	38	12	24	15	22	12	21
CTGCGTTTAGACCTTG	alt_6042_new	24	9	29	28	10	20	8	22	5	15
TTTTTGTTGGGTGTAC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
AGCGCTGATTTGCAAA	alt_6042_new	46	18	61	65	28	57	20	52	23	27
CGCCTAACTTTAATCA	alt_6042_new	111	76	152	138	110	133	88	129	96	110
AGCTTGTTAGTTGATC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
AGGGTGGGTGCCCCTT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TGTGTAACGCAGCGTC	alt_6042_new	293	177	373	331	151	302	158	300	161	294
GGTGGCTATCCGCAAA	alt_6042_new	166	61	230	168	81	159	77	152	62	173
CAGCGCAGATATTCCC	alt_6042_new	55	37	88	56	26	43	27	60	45	47
GGACGCGACGTTCGAC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CGGCTGTACAAGGCTT	alt_6042_new	141	63	154	137	44	116	52	145	60	109
GTTTCAGCTACGTTAA	alt_6042_new	54	39	62	53	21	43	26	37	26	36
CCATGGCGATGTTAAT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GATGACCAAATATATA	alt_6042_new	29	17	43	35	7	29	18	27	14	26
ACATAATAGCCCCAAT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CTCTATCTGGGCGTTT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
CAGTCCCTTTTGATGC	alt_6042_new	71	37	87	86	33	69	33	62	33	49
TAAGGTTCGATCGAAA	alt_6042_new	25	17	27	34	12	21	12	32	18	18
CTCCGGCACTCAGTAG	alt_6042_new	424	325	548	489	328	457	334	475	336	395
AGCGTTTTACGGGTGC	alt_6042_new	6	2	7	3	2	6	3	5	2	2
TTGGGCCTTAGAATTT	alt_6042_new	16	3	23	8	5	16	7	21	2	12
CTTCTCTCCTATCAGC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GACCGGTAGACACCTT	alt_6042_new	146	93	142	120	47	102	56	110	60	95
TTAGTGTCCTAGTCGC	alt_6042_new	73	66	81	78	60	75	67	56	74	58
TCATCACGCTCTTAAC	alt_6042_new	0	0	0	0	0	0	0	0	0	0
TTAATTTGGAAATGCT	alt_6042_new	0	0	0	0	0	0	0	0	0	0
GCTCTACTTACGTTTC	alt_5640_new	1	3	3	0	3	0	5	2	11	1
TCTCAGAGAAGTCATC	alt_5640_new	52	77	47	64	89	44	82	33	73	38
TAGGTGTCTCGGCATC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTTGTCGATATAGCTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CCGGGTTTACATTTGG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
ACACATACGTGTCCGG	alt_5640_new	10	16	15	8	17	11	13	13	29	5
AAAATCTCTGGCGCAG	alt_5640_new	12	35	20	16	29	15	38	14	31	11
AAGTACCCATGCTACT	alt_5640_new	63	82	59	55	89	44	107	51	113	45
TCGCCGCGGCTCCTCC	alt_5640_new	41	67	44	38	83	43	83	44	107	33
CAGTTTGTGGTTCGGT	alt_5640_new	42	81	37	38	102	28	69	49	94	32
TTCATGGATGAGCCCG	alt_5640_new	10	6	11	13	16	9	20	11	22	12
CCTGTTTCTTACGAAG	alt_5640_new	7	5	7	5	13	3	20	6	9	6
CTATGAGGGCGTGTCA	ref_5640_new	12	14	12	12	27	7	27	10	28	12
CTCCAGTCTGCTTCTC	alt_5640_new	0	5	6	2	6	0	2	1	2	2
CGTGGACTCTTGTACC	alt_5640_new	15	18	12	12	20	14	22	11	19	8
AAGCTTGGGGCTCCGA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTCGCTAACCTTGTGT	alt_5640_new	23	55	41	26	42	33	63	27	61	21
CTTGATCTTCTTTTAT	alt_5640_new	150	228	166	128	254	134	252	145	278	144
GGCGGCAATCAGGCTA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GGGTGGGACCATCGAG	alt_5640_new	0	2	0	4	3	2	0	1	0	0
TTCATTCTAGAAGTGT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
ATTGCTTACAGATTTA	alt_5640_new	3	9	4	1	10	3	6	3	11	4
GCGCGCTGTGATTGAA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GTTGCCTAGGACAATC	alt_5640_new	3	8	0	0	6	7	8	3	12	1
ACCCTTTCGTAGCTCC	alt_5640_new	4	16	5	1	11	1	19	2	20	5
CAGATATAGGGTACTA	alt_5640_new	1	6	2	2	7	3	9	3	4	1
GCGTTGCAGCGGTCGT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
ATATTACAGTATTTGT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GGAGCTGAGATGAATT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TCACCCCGTTGGAATT	alt_5640_new	31	99	31	29	71	28	76	22	97	30
CCTGATCTTATCACTG	alt_5640_new	6	28	10	9	28	4	25	5	31	4
ATTTTTTTACAAGATT	alt_5640_new	25	37	31	39	46	23	37	23	36	17
TTGGCATCAAGTTCGA	alt_5640_new	13	19	5	6	28	8	24	8	21	21
ATTGACGTTCACGTAA	alt_5640_new	43	78	35	38	74	31	91	31	75	35
ATTATTTGGTCTCCAG	alt_5640_new	13	15	6	5	10	7	12	2	13	4
ACCCATGCTCCACAAT	alt_5640_new	27	77	35	31	83	40	98	26	91	29
GGCTCACGTCACCGTG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTCGTCGGACG	alt_5640_new	43	93	52	46	76	48	109	54	113	44
CTAGGTGGAAATTCGG	alt_5640_new	3	10	4	8	13	2	18	9	12	4
AATCGCTGGCGATGGG	alt_5640_new	17	22	24	12	20	9	22	16	20	18
AGGAGTCTTCCCGTGC	alt_5640_new	2	3	4	1	7	3	4	0	6	3
TTACAACGGAATGTGG	alt_5640_new	23	18	26	20	30	22	29	13	23	16
TGTTGCCATACATTAT	alt_5640_new	17	24	20	13	23	15	24	14	42	12
GTTACTAGATTTAGCG	alt_5640_new	0	10	3	4	10	4	11	3	14	10
ATAGAGTAGGCGCAAG	alt_5640_new	2	12	2	5	13	5	7	3	9	2
ACGTCTGTAGTGTTGC	alt_5640_new	10	17	11	14	19	10	24	6	17	7
CGTTGGAATTGGACAC	alt_5640_new	13	25	8	4	13	11	32	9	33	12
CTTAGCCCTGCGCTAT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CGGTGCTGCCTGGTGT	alt_5640_new	27	76	47	34	55	28	63	34	65	38
TATTTCGTAAACATGC	alt_5640_new	22	42	30	22	39	28	47	21	42	32
GTATTGCATAAGGAAA	alt_5640_new	10	23	14	8	13	7	25	7	21	5
TCACCTTCTGTTTATT	alt_5640_new	17	57	21	27	47	16	51	15	53	14
TGGACAAGGGCGGTCC	alt_5640_new	5	12	9	4	11	5	10	9	7	4
AAACCATGAAGATTCA	alt_5640_new	33	47	33	33	56	21	55	23	60	21
TTTCCTATTGAAGCTG	alt_5640_new	8	11	4	6	15	7	7	3	9	5
GTCGTTTTTTCCGGTC	alt_5640_new	4	9	2	5	2	1	3	2	2	3
GTGATTTTTGGCCTAG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
AGTCAATATCTATGTT	alt_5640_new	4	6	3	0	5	1	6	1	13	3
AGGGTCTCTTGTTACA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CGTTTACTCAGTCCGC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TCATGGCGGTTCTCCG	alt_5640_new	7	3	3	7	3	2	4	3	4	2
ACGATATACAATTACA	alt_5640_new	26	31	16	24	17	13	39	12	34	22
GCCCTTCACCATACAT	alt_5640_new	5	16	8	4	10	10	13	8	9	9
TTTCTTACGTTCACGG	alt_5640_new	15	25	19	13	31	20	30	15	34	17
CTAGCTATGTTCTGGT	alt_5640_new	27	70	35	27	67	26	82	20	60	19
GCGGAGCAATTAGCGT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TGAGGAGTAATCTCAG	alt_5640_new	4	10	10	7	12	6	11	11	12	9
ATTATATCCAGTAGTA	alt_5640_new	7	7	7	10	7	3	8	7	3	3
TACTGTGCACATGGGA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
ACCCGGTGAATCAGCC	alt_5640_new	5	24	5	8	25	3	30	9	23	5
CAGACGGGCATGTACT	alt_5640_new	51	106	56	70	97	49	104	57	106	45
TTCCTGGGGTTTCGTT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
ACGTTTTTCTAATCTC	alt_5640_new	25	20	24	15	32	21	38	19	35	28
TCCGGAACGTGTGAAT	alt_5640_new	52	88	65	62	122	62	129	68	131	50
TACTGAACTTTAGTTG	alt_5640_new	28	46	23	27	40	18	55	20	56	17
TTTGGGCCTAGGATCT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTCCCCCTGTT	alt_5640_new	11	51	18	17	36	19	43	22	41	14
GCACCGTCAGCTCGAC	alt_5640_new	11	56	29	24	41	19	36	20	45	15
ACGTTTGCTACTGTGT	alt_5640_new	6	14	10	7	8	6	16	4	17	6
TTGCGTCATGGTCTCA	alt_5640_new	1	2	5	2	4	4	2	1	2	2
TACGGAGATCGCGCCG	alt_5640_new	1	1	3	2	2	0	3	1	0	0
TCTCGGCCGCAATCCG	alt_5640_new	15	20	20	14	26	10	14	12	25	11
GGCTAGTTATCATTGG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GCGATGGATCGGTATA	alt_5640_new	3	12	8	7	9	9	8	8	17	4
GGCCATTCCGGCCCTA	alt_5640_new	11	16	22	9	18	7	20	11	15	7
TGTTCTCTATTAGACT	alt_5640_new	37	115	71	42	102	55	119	33	115	40
CGTAAATGTTTTGATC	alt_5640_new	24	57	25	30	59	21	43	26	53	25
AGCCTTCTCGCCCGTT	alt_5640_new	4	12	5	2	13	1	13	5	11	7
CTAAGCTTCGCACATG	alt_5640_new	9	27	11	15	16	11	23	8	14	9
ATTAAATCACACATGT	alt_5640_new	50	89	68	69	106	52	93	58	115	58
TGTCCGGGAAGTCCAT	alt_5640_new	19	11	20	21	12	27	21	22	16	13
ATTTGCAAAACGTTTC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GCTGATACTAGACGGA	alt_5640_new	22	27	25	17	30	16	42	11	28	11
GGTCTGATGTATAGAA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GGGTCATTGGAGAAAC	alt_5640_new	20	61	28	28	55	24	58	19	55	26
TTTATTGTGCTGTGTT	alt_5640_new	23	46	26	17	42	15	41	20	42	13
AGCTGTAGAGGTCAAT	alt_5640_new	4	4	6	2	5	1	5	3	5	0
CCGTAGGAGTCTTGCT	alt_5640_new	79	144	97	65	132	64	152	76	151	65
CTAAGTTCAGCGTTTT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTGCGGGGATGCCTAC	alt_5640_new	7	38	16	15	26	9	37	5	29	11
CTATAGTATTATACTG	alt_5640_new	6	26	5	8	19	5	23	4	25	2
CTGCAAATCTTCACGT	alt_5640_new	17	22	7	9	19	16	21	11	17	16
GTATTGTCTGGGGTCC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GTCGAGGTGGCCCCAA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTTGTACCCTTAGGTG	alt_5640_new	4	9	7	6	12	7	12	6	14	6
GCGCTCTAACCAGGGC	alt_5640_new	29	70	39	32	64	27	59	41	60	19
CTGTCTAGGGCTATAT	alt_5640_new	24	39	30	29	44	19	44	32	41	34
TAAGCAGCGGCAGATA	alt_5640_new	16	38	24	27	48	13	31	14	38	19
AGGTGGGGTCATGTTG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CTTCAGAGAGGCTCTT	alt_5640_new	36	52	38	33	85	33	68	49	69	39
ATATAATCTAGCCAAT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CCCCCAGCGGCAGTGG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
ATTCGCGTGCTCGCGT	alt_5640_new	27	31	20	17	24	16	37	10	36	19
GGGTTTTTCTCGTGTC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTTTGTGCGCTTTCAG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GGCTCCCCAAGTAACT	alt_5640_new	7	19	10	5	18	6	21	10	18	7
CTTTCGTGTAAGGCAC	alt_5640_new	113	243	102	120	250	129	247	103	237	84
TAATATAGCCGGTTGT	alt_5640_new	19	39	16	13	24	11	41	16	23	10
ATATGTACCGTTTCCA	alt_5640_new	15	30	28	28	38	17	38	37	47	19
AAGTGAGCGGTTGAGC	alt_5640_new	24	63	44	30	57	15	66	30	58	27
CCCATTGTTAGCTGTC	alt_5640_new	20	44	23	20	38	16	47	21	48	26
GTAACACCGAAGACCT	alt_5640_new	1	1	0	2	3	2	3	2	0	0
TGATTTCGTCGGCACC	alt_5640_new	10	13	19	14	24	9	19	10	17	6
ATTTGTTTTTTCAAGC	alt_5640_new	16	19	20	12	38	15	36	20	37	25
ATACGGGAATCCCACG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GCCGAAATTACTAGCC	alt_5640_new	24	63	32	27	75	25	64	27	66	29
GTTTCCATATATCCGT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TTCCTATCCTCTCGAA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GGTTGACCGGACGATC	alt_5640_new	1	2	0	0	1	0	7	0	1	0
TCGGTATGGGCCCTAC	alt_5640_new	8	11	7	8	14	5	23	4	17	5
GGTCGTCACGACTCTT	alt_5640_new	2	17	4	5	13	7	17	7	9	6
CGTCTACTGCTTTTAA	alt_5640_new	17	44	21	26	37	17	32	11	47	15
CGGTTGTAGAGTCTGG	alt_5640_new	0	4	0	0	2	1	8	1	5	0
CCCTACATGCTCTCGT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GCTCGCTAGCTCTAAA	alt_5640_new	11	12	8	8	12	8	15	7	11	6
CACTATGGTCTCATTG	alt_5640_new	30	57	24	30	55	18	65	22	44	14
TACAAATGAACGGGTT	alt_5640_new	8	13	7	9	19	7	9	7	23	6
TTTCAGCGCTCTTTAG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GGGTACCGCTTCGGCT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CTGTCAGCTTAAAACC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CCAATTAAAGCTCAAT	alt_5640_new	4	17	7	6	14	8	13	4	12	8
AACACAGTAATTCTGC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CTTTATTTGATACTTC	alt_5640_new	35	73	55	44	84	40	77	34	99	29
GTGTTCTTTTTGAGTC	alt_5640_new	4	21	7	12	17	10	20	6	17	7
ATATTGGCGTTTGACT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GCTCATCCGCATCGGG	alt_5640_new	1	8	2	2	2	1	4	1	4	2
TTGTTCATCTCTGTCT	alt_5640_new	30	34	16	38	53	23	40	12	36	28
CCAGTAAGTTTGCAAC	alt_5640_new	8	10	3	0	15	5	13	5	5	4
CACTTCAATCTGGGCA	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TGTTTGCGAGTCCGTT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GTCTGCTGTGCTGCTG	alt_5640_new	1	3	2	2	3	1	6	0	1	1
GACTTACATTTGTCAT	alt_5640_new	2	7	1	0	2	2	2	0	6	2
CCCATTGGGTGCGAGG	alt_5640_new	53	82	58	47	80	47	98	38	88	44
TCCTTCACCTACCTTC	alt_5640_new	2	53	2	5	36	1	48	2	29	3
TCCTCGTCGCTTTATC	alt_5640_new	7	9	4	6	9	3	9	13	10	4
GTAATTGATATAAGCC	alt_5640_new	14	20	27	10	27	13	27	13	26	15
ATTCTGACACGACGTG	alt_5640_new	5	15	3	4	7	6	12	6	7	6
GATACCCTTGGACGCT	alt_5640_new	14	23	15	14	19	21	23	11	16	6
CATTACCGCTCGTCTT	alt_5640_new	3	2	2	2	1	4	3	2	3	1
GAACGTTCTCAACCGG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CCCAACACGTGCCTCT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CTTCTACAAACGTGGT	alt_5640_new	8	5	10	7	12	5	14	3	7	10
ATTTAATTTCCGTCCC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TACTAACCCAAATCAG	alt_5640_new	9	21	15	8	28	6	23	10	30	16
GTTTGGCACACTGTGA	alt_5640_new	11	35	32	21	39	24	42	18	54	23
AATGAATACGGATCCT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
ACTCCCGACACTTGTT	alt_5640_new	5	18	8	4	14	4	23	3	22	5
GGAGCTCCGGTATGGC	alt_5640_new	18	27	26	24	29	16	20	10	46	10
TTCCCAGATTCGCCGC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
GACCTATTATTCGTGA	alt_5640_new	16	27	21	11	29	16	33	11	28	16
CCGTATCTAGTACAAT	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TGGCAACGGCCGGCCC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TGCCGATTCGTCCTCT	alt_5640_new	5	6	2	3	5	4	7	2	8	2
CTTCATTGCGCATAGG	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CTGGTTCGCGTCCCTA	alt_5640_new	10	13	7	5	19	5	39	12	17	9
TATGTTTGTTTGATAA	alt_5640_new	0	0	0	1	0	0	0	0	0	0
TGTTTGATGTTTGTAC	alt_5640_new	4	6	4	6	7	6	7	0	14	7
GAGAGATATCAAGGGT	alt_5640_new	14	52	34	28	43	31	42	15	48	19
CTAACGCTTAAGTCGC	alt_5640_new	11	17	9	4	7	2	10	10	6	6
TTCTCGGCCTACCCAC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
CGCCGAGTCTGTGTCG	alt_5640_new	15	22	15	22	40	20	42	12	42	19
TAAAATGGAGATGGGT	alt_5640_new	26	31	25	25	22	15	30	16	24	18
TATTAAATTTAACGGC	alt_5640_new	0	0	0	0	0	0	0	0	0	0
TAGGACTTCGGTCATT	alt_5640_new	5	10	10	6	14	5	9	8	14	2
CAAGATCCCTTTGAGG	alt_5640_new	19	38	25	25	38	17	44	21	46	17
TTAGTTTTGCGGGTGG	alt_5640_new	30	61	46	26	53	45	47	36	50	25
GGGCTAACTTCGGACG	alt_5640_new	16	23	13	8	23	16	24	11	32	10
ATTTTTTGTTAACTTT	ref_4645_fdr	27	67	38	23	51	28	57	42	53	32
AATACTGTCGTCTGGA	ref_4645_fdr	13	10	11	10	24	11	22	4	18	9
GTGAACGTAGCCGCCG	ref_4645_fdr	11	16	11	8	12	20	6	5	17	3
CCTGAGCTTCCGTCAG	ref_4645_fdr	14	21	23	13	21	8	29	8	33	13
AGTTCCCTTTAACCGA	ref_4645_fdr	5	6	6	5	2	1	6	3	5	1
TTGATCGTGGTGTTTG	ref_4645_fdr	22	28	34	31	46	38	50	23	55	22
TCCGGTCCCTGCCCAC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GCATTGTGGCGGCGCT	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GCGGGCTAAAGTTTAT	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TTACGGAGTTGACTTA	ref_4645_fdr	5	19	4	5	13	3	10	16	13	8
AGGAACTGTAAAGCTC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCGCAGGGTTGAT	ref_4645_fdr	14	27	18	19	31	17	35	18	28	12
TACTTTACAGGCTCAC	ref_4645_fdr	24	38	32	21	32	16	47	22	49	22
ATGAAGCGCTTGACTG	alt_4645_fdr	10	13	13	13	25	13	25	8	22	14
CCAGGCGTTGTGGCTA	ref_4645_fdr	9	12	4	8	14	2	13	0	16	3
GCCATGTGACGCGCAA	ref_4645_fdr	5	18	7	5	23	4	22	6	23	4
ACGATTTTAGTCGCGG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCGGCTAACAGTT	ref_4645_fdr	9	14	15	7	10	10	18	9	23	3
GGTTACCCTGCGGCCG	ref_4645_fdr	2	16	21	17	22	10	19	13	22	7
CTGGCCTCGGCTACAT	ref_4645_fdr	36	77	35	42	49	35	72	31	70	34
TTCTGATTTCCTCATG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTGTCAATAGGTA	ref_4645_fdr	41	60	31	42	64	45	63	25	70	32
GCACATCCACCTAGTC	ref_4645_fdr	49	55	51	53	70	37	64	38	70	39
TCATTAGTCTAGCCGT	ref_4645_fdr	7	7	16	6	28	11	19	13	14	7
CCCTGACACCGGTCAT	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAATACTTTAGCC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGATTCCGACCTC	ref_4645_fdr	88	122	67	65	125	70	142	61	133	56
AACTAGCAGGAGAGGA	ref_4645_fdr	14	33	25	18	29	16	37	10	30	17
TGCTTTTTAGTAGTCT	ref_4645_fdr	2	15	10	3	18	6	12	4	12	4
CATGGAAGCTGTTTAG	ref_4645_fdr	16	23	23	7	23	15	30	6	18	18
ACGCAATTCCTGTTCC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TTATGCCAACTGTCAC	ref_4645_fdr	1	3	0	1	2	0	2	0	5	1
TTGCAACAAAGTGTTG	ref_4645_fdr	9	17	8	7	23	9	19	8	15	9
TGACCGTTGGAACAGT	ref_4645_fdr	19	16	19	9	25	15	35	15	25	20
GTCGCCATTCATATTG	ref_4645_fdr	22	45	38	22	48	31	50	23	67	25
GTTGACACTCAATGGT	ref_4645_fdr	3	18	7	9	21	3	17	6	14	6
GTACTTTTGAGCGCTC	ref_4645_fdr	53	68	51	38	67	27	65	26	57	19
CTATTCCAGGTGCGTC	ref_4645_fdr	3	8	3	0	12	3	6	3	3	9
GATTACCTGCCTTACG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGTCTATCGAGCT	ref_4645_fdr	13	10	10	8	23	13	20	13	34	12
GCTAGTCCCTCATATA	ref_4645_fdr	14	27	12	8	33	9	21	9	21	8
CCATCGTCCTCTACTC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
AGGCAATAACCCACGA	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTCTCCAGGCATC	ref_4645_fdr	96	163	116	101	150	82	148	80	175	71
CGGTGAGAGGATAAAG	ref_4645_fdr	288	429	318	272	503	228	471	272	502	275
GGAATAAGGCTTAGAT	ref_4645_fdr	6	7	5	3	7	5	4	3	5	3
ATTTCCATATCACTGG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
ATATGTTAATTCCGTT	ref_4645_fdr	0	0	0	0	1	0	0	0	0	0
GCAGGGTAGTGGACCA	ref_4645_fdr	16	27	17	8	26	12	33	10	24	8
GTTGCCTCACCGTGTC	ref_4645_fdr	17	27	18	14	25	16	30	16	22	11
AGGCTCTAAGAATTGG	ref_4645_fdr	9	15	3	5	13	6	14	8	29	10
TACGACCCGCGTACCC	ref_4645_fdr	30	65	33	23	60	31	58	38	77	23
GGGAATGACAGCCGGC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GTACGTTGAATATTAA	ref_4645_fdr	5	9	7	6	5	4	7	6	9	0
TGTATCGCGTGGAATT	ref_4645_fdr	25	57	23	13	53	25	54	42	53	35
CGCTTTGTCCCTACGA	ref_4645_fdr	2	12	5	3	7	3	12	6	11	4
AGGTTAGGCTTTAGAT	ref_4645_fdr	21	40	25	26	31	25	29	18	30	14
CGCGATCTGTTCCATA	alt_4645_fdr	69	145	80	78	115	77	138	69	99	46
TTATGAGCCGTTTCTC	ref_4645_fdr	58	113	42	41	88	39	86	52	114	34
GGTTTTACGTTTTAGG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTCATGTTATGGA	ref_4645_fdr	36	73	54	35	71	41	68	44	84	23
AGCCCCGAATGAATAT	ref_4645_fdr	9	40	13	2	31	9	39	10	29	8
TCCATAGGTGCAATGT	ref_4645_fdr	13	20	6	2	12	10	11	3	9	7
CATGTTATGTAACTTT	ref_4645_fdr	7	31	8	11	35	18	19	15	28	15
TTTTGTAAGTCTAAGT	ref_4645_fdr	13	32	30	12	29	14	29	13	36	13
TCCAGACTCAGTCGTG	ref_4645_fdr	20	49	22	24	52	15	47	17	58	21
GTGCATATTCTTTTTG	ref_4645_fdr	8	15	10	12	12	10	20	10	15	6
TCCTATGTTATTTGGC	ref_4645_fdr	6	15	7	13	17	1	14	9	15	6
GCCATGACACGTTTAT	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCCCCAACAATTG	ref_4645_fdr	83	148	83	95	139	76	151	72	165	85
CTCCTAGTCGTTCTTA	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TGGAGCACCTCTTTAG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TGATCTAGTTGGTGAT	ref_4645_fdr	5	2	2	0	4	1	10	2	1	3
ATATTCCCTCCCCGGA	ref_4645_fdr	87	138	59	54	152	63	142	65	134	55
TTTTCGATGATTTATA	ref_4645_fdr	16	31	29	20	29	33	31	11	26	19
GTCAGCGTCTCGGCCC	ref_4645_fdr	0	2	2	0	1	1	7	2	2	0
GGACGAGTAGCTTGCG	ref_4645_fdr	18	19	10	12	26	12	35	27	32	13
TGTTCGCGCAGAAATT	ref_4645_fdr	51	96	67	62	109	48	106	51	85	55
ACCCACTCAGTCTAAG	ref_4645_fdr	13	41	24	19	49	14	36	15	32	15
TCGCCATCTCCGTCCC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCAGGCATGGTAT	ref_4645_fdr	33	41	31	32	37	27	43	33	50	25
TGCTCCGGAAGCAGGG	ref_4645_fdr	21	38	29	25	40	17	38	20	39	20
ACTGGTGCCTCCATTA	ref_4645_fdr	34	31	26	29	32	29	47	30	36	20
TCTGGTTCCATCTTTC	ref_4645_fdr	128	274	131	120	261	124	318	122	304	106
GGGTTGATGATGTAGC	ref_4645_fdr	2	7	5	3	7	2	4	5	2	3
GCTGTCTCCGCTGTCC	ref_4645_fdr	6	2	5	1	6	1	5	6	6	6
TCCACGGTTTTCTTCC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCCGTTAGCTTAT	ref_4645_fdr	7	21	7	7	14	10	34	6	22	12
TGTTTGTTAAGTATTC	ref_4645_fdr	1	10	6	0	13	3	9	1	7	4
GCACCATAGAATTTTT	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TACCGGATATCGTCAG	ref_4645_fdr	37	82	52	57	79	33	81	33	76	38
TTCTGATTAGGTTGGC	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGTCTACATTTGT	ref_4645_fdr	26	41	27	20	49	24	61	19	44	16
CCTTAGGTTTGTAGTC	ref_4645_fdr	10	18	8	6	14	5	14	5	11	6
ATGCCTTATAGGTTCG	ref_4645_fdr	14	33	20	18	30	13	30	10	44	13
TTTTGTAGGTACGCAA	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GGTTAGCTTCTATTTA	ref_4645_fdr	25	52	38	24	39	27	59	22	44	28
TGTCTACGCTTGTCGG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
GATTTTGGGCTTTTCC	ref_4645_fdr	10	25	15	8	26	12	19	15	29	9
TGAACATCCAATCGGC	ref_4645_fdr	15	34	12	21	36	6	29	17	18	9
AACTCCTCGTTCTCTT	ref_4645_fdr	1	10	3	1	3	4	11	1	12	3
GCAGAAGAGAAATATC	ref_4645_fdr	18	33	23	21	25	18	31	16	20	20
TACAGGCTATTAAATT	ref_4645_fdr	40	72	62	36	81	31	83	49	89	59
TGACAGTCTCAAGTCG	ref_4645_fdr	22	44	30	22	47	22	56	29	62	17
CCGTCGCCTTTGTCTG	ref_4645_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGATGAGATAACA	ref_4645_fdr	10	11	7	10	5	1	13	10	14	5
ACTCGATGTGGTGCGT	ref_4645_fdr	16	44	21	6	28	13	37	12	43	5
GGCGGGATCCGGATTG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGTCAGAACAAAG	ref_4645_fdr	61	118	71	77	134	68	128	48	148	57
GGGGTTTCCCGTTTTT	ref_4645_fdr	71	103	84	68	103	58	89	58	129	60
TCGTTCGAGCGCGCTT	ref_4645_fdr	9	22	13	8	26	9	18	8	17	10
GAGTGCGTGTGAAATT	ref_929_RC	389	85	470	430	72	424	73	399	83	344
TTGACAGACCTGCGCT	ref_929_RC	166	46	288	202	53	193	56	206	45	182
AGCGCTGTACCTTTAA	ref_929_RC	1186	202	1434	1372	193	1123	209	1151	224	899
TCAACAGTTGCAGCCC	ref_929_RC	82	12	106	93	21	90	12	94	9	58
CCTAGTCTCTGTAAGG	ref_929_RC	229	133	241	211	123	175	121	183	128	183
TCTTAGTTGATTTGGA	ref_929_RC	190	44	215	260	50	202	39	207	51	157
ATGACCCAACATCCAC	alt_929_RC	672	301	818	685	332	661	326	696	326	614
CTGCCTCATAACTCGT	ref_929_RC	104	18	151	105	16	101	25	111	34	100
CAGTCATGGCGCGTCA	ref_929_RC	263	49	321	279	38	210	54	258	39	242
TATGGACATTACACTG	ref_929_RC	250	59	374	274	89	253	63	265	76	252
CAGTTAATATGTTGTT	ref_929_RC	241	54	336	263	39	235	50	237	41	225
ACAGGTGTGTTGATTC	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TACCGGTTACTATACT	ref_929_RC	448	81	457	432	86	377	80	387	82	337
ATCTCAGTTGTAGCAA	ref_929_RC	0	0	0	0	0	0	0	0	0	0
GTCTCCGTGGTTAGTA	ref_929_RC	109	20	154	167	23	125	30	130	29	136
GATCACGAACCAGATC	ref_929_RC	0	0	0	0	0	0	0	0	0	0
CCGTAGGGGTGTGTTC	alt_929_RC	105	22	106	99	19	80	16	75	11	82
ACACCAGGGCCACTGC	ref_929_RC	53	10	105	82	8	55	17	60	18	48
GGTTGCTTGTCGCCGT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
GGGCACTGCTACTTAA	ref_929_RC	107	20	145	138	40	128	29	110	31	118
CTCTACGTTGGCTGCA	alt_929_RC	0	0	0	0	0	0	0	0	0	0
CTTTTTGTCTTCCATT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
CCGTCGGTAACCCGTC	ref_929_RC	113	60	170	172	71	150	73	122	73	134
AAAACGAAGGTCTGCA	alt_929_RC	43	16	56	46	12	47	33	44	17	38
TCAGTACTGGCAATCC	ref_929_RC	20	12	21	25	13	17	16	25	23	21
CCGAATGTTTCCTTTA	ref_929_RC	102	22	134	142	28	105	31	110	30	94
ATGGTTCCTTTTTATT	ref_929_RC	493	100	665	616	130	510	90	511	106	463
CTTAAGGATCAAAGAT	ref_929_RC	655	124	845	757	133	647	134	660	139	619
CCCTTAAGACTACTTT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TTGCGATATAGTCAAC	ref_929_RC	6	2	19	5	2	12	4	7	1	5
TCTGTTCTTTAATTCT	ref_929_RC	52	11	53	40	5	42	11	31	7	30
TTCAACGTTATTCAGA	ref_929_RC	54	39	75	84	34	64	42	63	25	65
CTCGTCCGCGTCTCGG	ref_929_RC	125	22	156	130	33	108	30	106	28	101
TATAGAAACGTTCAGG	ref_929_RC	341	68	437	374	61	293	68	286	96	341
GTGTGCACAGTCTCCT	ref_929_RC	81	18	87	85	19	78	18	77	15	65
AGCCGGGAAATTGTTT	ref_929_RC	102	27	113	115	32	83	33	105	26	92
CTGTGGCATAGGGTTT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
CACAACGCTCCCCGAC	ref_929_RC	323	95	408	392	78	361	64	344	78	350
TTAAGAAAGGGAGTTA	alt_929_RC	43	16	53	56	23	39	15	55	27	37
CTTACTTCTTTCAGTG	ref_929_RC	556	139	786	599	129	555	129	525	116	481
CTTCATTCCCTCATTC	ref_929_RC	120	33	126	132	24	100	33	117	37	98
GTTGTGGTTCCGTGCC	ref_929_RC	47	7	78	47	8	49	11	45	18	44
CCCACTGGCTGCTGCC	ref_929_RC	130	34	153	137	18	106	39	141	18	123
CTGATATGTTTGGCCG	ref_929_RC	0	0	0	0	0	0	0	0	0	0
GTTCGTTAGTTACAAC	ref_929_RC	134	27	201	146	32	118	33	128	29	114
TAATGAGGGTTTAACT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
CGGCCCCATCAGGACT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TAAAGCATCTATCGCC	ref_929_RC	28	34	30	21	33	26	31	18	40	21
ATTCCGGCATCTGTGG	ref_929_RC	44	4	50	47	8	47	7	47	12	38
GTTGTGCAAAGCTCAA	ref_929_RC	0	0	0	0	0	0	0	0	0	0
GTCCGTATTCATGCGT	ref_929_RC	97	13	94	117	10	96	31	86	18	72
TGAATTCCCGGTGGCA	ref_929_RC	88	36	89	85	30	68	43	90	33	92
CTCACTAAGAACATCA	ref_929_RC	40	11	60	43	9	38	8	44	11	40
CTCTCTTCCTCTCCTC	ref_929_RC	329	67	402	380	48	340	90	319	64	298
GAGGTCCAGCTTGTGC	ref_929_RC	64	16	78	73	20	68	17	64	18	71
AGTATACCTGGTTTCC	ref_929_RC	44	7	47	42	7	46	8	34	10	29
GCCTCGTCTTTCTTAT	ref_929_RC	167	47	187	191	49	148	37	170	52	147
ACGGCCTATTACAGCG	ref_929_RC	257	48	339	303	46	241	53	293	59	278
GGCCGTTAGACGCGTT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TCCCCATTAACAGCTA	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TGTACCCCGGATGAAT	ref_929_RC	261	85	380	328	91	302	78	320	106	278
GAAACCCAGTCCACTT	ref_929_RC	353	60	412	297	60	307	39	317	68	282
GCTAGAGGTGGATCTA	ref_929_RC	0	0	0	0	0	0	0	0	0	0
GGTAAACTAGTGGGAC	ref_929_RC	79	12	126	117	22	101	15	103	15	69
ATACTGTGAAGGTCGA	ref_929_RC	407	88	462	436	91	347	101	422	90	342
TGTAGCGATAGCGATC	ref_929_RC	105	21	152	99	27	101	31	111	37	100
CCATTCAACCCCGGCA	ref_929_RC	1030	203	1171	991	192	928	183	931	195	812
AAATCCTGCAGTGAAG	ref_929_RC	0	0	0	0	0	0	0	0	0	0
CTTCTTATGTAGCGAT	ref_929_RC	36	5	24	16	4	19	8	23	10	11
GTTTGTGCAGATTGTT	ref_929_RC	81	19	108	77	16	86	16	72	21	65
CGAGGTAGAACCTGGA	ref_929_RC	120	15	123	102	19	98	14	95	16	73
CATCTAGGGGCGCGTC	ref_929_RC	648	116	792	697	157	630	147	628	143	542
GTTCTTATTCAGGTGG	ref_929_RC	551	126	626	604	137	542	130	541	116	502
TACGCCCCCAGAATAT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGGTTAGGCGAT	ref_929_RC	1	0	0	0	0	0	0	0	0	0
CCGTAGGAATTTATCT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TTAGACAACACAGCAG	ref_929_RC	60	16	82	45	15	58	7	67	15	47
GTGCAGTGTTGCGGTA	ref_929_RC	263	51	327	263	59	279	63	273	41	228
TGCCCGGAGACGAAGA	ref_929_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCAAACATTCGA	ref_929_RC	37	14	48	38	19	34	8	43	7	39
CGGCGTATTTGTTCTA	ref_929_RC	175	37	201	194	42	168	55	186	43	154
GCGCTAGGCACGGTCA	ref_929_RC	232	38	295	245	40	189	43	236	47	184
GCTTATTGGCTATAAA	ref_929_RC	0	0	0	0	0	0	0	0	0	0
GCGACGTTACACTATC	ref_929_RC	42	7	45	50	9	46	6	34	12	37
TCACTGATCTCATCGC	ref_929_RC	227	90	301	267	65	211	59	246	74	214
ACACTACTAATGATTG	ref_929_RC	184	33	201	155	44	159	47	165	37	125
CACGTTTCATCCGATG	ref_929_RC	282	67	365	304	71	295	59	302	54	272
CCCGAGAAATGGTACC	ref_929_RC	0	0	0	0	0	0	0	0	0	0
CGTGGCACTCCATGAC	ref_929_RC	156	32	141	140	22	110	26	141	36	119
GCATATCCCATAACTG	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TCGGTTAAACCTTACC	ref_929_RC	253	72	330	265	93	249	81	280	85	228
CTTTTTGTCTTCGATG	ref_929_RC	318	61	388	347	77	340	73	312	72	258
CTTGTCCATTCTAAAC	ref_929_RC	366	82	489	350	83	355	80	395	96	347
ATCTATCAGTCGGTAG	ref_929_RC	390	97	461	412	75	351	77	377	87	323
CTAAGTCATCATTGGC	ref_929_RC	185	38	244	235	49	197	52	205	46	165
TAAGCATATCCAATCC	alt_929_RC	382	77	468	474	60	399	84	426	89	375
GGAATAGTCACGGTGA	ref_929_RC	474	110	595	495	98	510	133	473	116	451
AGCATATGCTGTATTC	ref_929_RC	319	46	409	394	45	320	66	360	70	276
CGCCATTCAAGGATCG	alt_929_RC	867	158	1033	976	169	833	176	825	150	737
CTCGACATGTGCGAGC	ref_929_RC	362	57	445	397	64	353	79	347	71	353
TCTTCACGGACGCGGT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
ACCGGTAGCGGGTACC	ref_929_RC	0	0	0	0	0	0	0	0	0	0
ATAGGTACTCCGGAAA	ref_929_RC	1068	246	1222	1119	229	970	248	1008	253	913
ACGGATAGTTAGGGTT	ref_929_RC	164	30	236	151	32	151	31	164	39	140
ATTTTGATGGACGGAA	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TATCCTGCGACCTTTG	ref_929_RC	0	0	0	0	0	0	0	0	0	0
CATTTCTCTCGTCTGT	ref_929_RC	106	23	100	118	12	95	16	89	17	70
GCGGCCACTTCGTTCA	ref_929_RC	969	218	1243	1039	248	858	234	955	236	828
TCCTCATCCTCATGTT	ref_929_RC	70	25	74	64	24	40	17	52	13	54
CTTCGAATTAGTCCTC	ref_929_RC	196	43	242	223	40	189	50	230	55	159
CTAGGATAGCCCGGAA	ref_929_RC	293	61	313	238	56	235	49	196	35	207
CCGAGTTCTCTTCCTT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
ACGACCAAGATCTTCG	ref_929_RC	291	76	341	327	58	255	63	250	61	244
GATGGTTGTAGTTTCG	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TTCCATCAATCATCGT	ref_929_RC	277	55	411	298	56	284	70	300	56	232
CGCACAATTCTTGGCA	ref_929_RC	182	45	254	208	52	175	33	223	30	184
CATCATCAAAGTCAGT	ref_929_RC	302	73	417	372	96	302	94	337	74	280
GTGCGTGTTGCGGCGT	ref_929_RC	0	0	0	0	0	0	0	0	0	0
TTGGGGTCAAAGAATT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
ACATTTTTAGAGCTTT	alt_5385_missing	9	9	7	3	6	2	0	4	5	3
GATGCGATTAGCATCC	alt_5385_missing	26	14	21	18	17	13	19	13	25	9
AACTTTGAACGCGGGG	alt_5385_missing	29	23	28	30	30	31	24	28	29	18
AGCATTTACTCCGAGT	alt_5385_missing	8	10	8	3	5	5	11	5	14	4
GTCGACTGGTCTAAGG	alt_5385_missing	28	28	22	14	23	19	38	15	22	20
TTGGTTTAGTAGCCAG	alt_5385_missing	75	86	106	87	85	80	111	80	90	70
AAACACGTGTTAAGTA	alt_5385_missing	25	22	27	23	23	20	24	23	30	22
CAACACCCCTCCCCGC	alt_5385_missing	16	6	13	12	19	13	17	15	13	15
AGCTAGCCCACGCGAT	alt_5385_missing	106	157	156	113	143	110	140	112	140	111
TTACGCACAAAGGGCG	alt_5385_missing	81	84	97	90	55	64	87	83	76	69
TTTCTGGGTTATTGCC	alt_5385_missing	15	7	9	5	9	10	13	6	17	14
TTCTGTACTCCATTAA	alt_5385_missing	132	125	144	102	134	100	127	89	125	119
ATATACGTCGGGGGCT	alt_5385_missing	268	259	320	273	323	263	329	247	341	220
CGGTCCAGCTGCGACT	alt_5385_missing	85	204	97	107	227	77	227	89	214	89
CGATGGTGGCTCATTC	alt_5385_missing	42	52	54	55	52	58	48	47	50	58
ACACCTTGGTTACCAT	alt_5385_missing	1	0	1	0	0	0	1	0	1	3
TGATTTTCTTGTTTCC	alt_5385_missing	77	66	79	75	78	63	72	45	85	53
ACTACTCTCTCGGGGA	alt_5385_missing	198	205	239	197	208	206	223	202	247	204
CCCGCTTGACCAGTAA	alt_5385_missing	144	213	167	149	202	122	194	144	173	130
AAGTCTCTTCGAGTTT	alt_5385_missing	23	29	24	17	26	20	39	25	23	22
GGATCCTTCTTGCTCA	alt_5385_missing	0	0	0	0	0	0	0	0	0	0
GGTTCTTGAATCTAAG	alt_5385_missing	70	77	80	64	83	58	74	62	72	43
ACGGGTTGCTGGTCTC	alt_5385_missing	17	31	16	13	23	10	26	14	32	12
GAGGCCGAGAGTTAGT	alt_5385_missing	11	10	7	11	6	9	9	8	12	4
TAGCGCACTTTCGGTT	alt_5385_missing	21	33	25	23	26	21	38	15	53	29
CCTGCGCCTACGGGCG	alt_5385_missing	21	46	32	32	33	31	45	28	42	32
CTATTGTCTCGCACGC	alt_5385_missing	30	54	45	36	33	23	33	34	28	44
ACTGAGCAATCGTTGT	alt_5385_missing	22	28	29	36	28	31	25	28	29	30
AAGTGTTATCGCTACC	alt_5385_missing	24	36	30	37	26	28	26	19	37	14
TGATTTTAATGGTTTC	alt_223_RC	92	37	135	110	28	103	28	96	22	96
TTATACCTGCCCACTT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CTTCACTGTCCCTTAG	alt_223_RC	16	6	38	27	9	27	4	28	12	29
TTACTCTTCAGTTGTT	alt_223_RC	16	4	29	20	4	17	8	12	13	15
ATTTCACGGCGGGGCG	alt_223_RC	41	9	47	51	13	47	17	49	14	49
GTGTGACCTGCTCGGG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
ACTTCATTATCAGTCT	alt_223_RC	152	63	206	172	43	153	71	153	66	156
CTTTGCGGATTACCTT	alt_223_RC	61	8	49	40	9	42	9	47	7	39
ATCACTTTTCACCGTT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
ATATAGAGGAAGATTT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GACACATCTAGCGTCC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTCTTATCAATT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CGTTTAATGGACAATG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TTGTTGGCTGTCGCTC	alt_223_RC	26	12	49	36	9	36	3	37	15	33
CCCCCCCCGCCTGGGT	alt_223_RC	3	6	5	3	2	2	0	2	0	2
TTCTAGTGCAATCTGA	alt_223_RC	67	19	102	70	29	79	30	64	38	67
TTTCATATTCGGCTCA	alt_223_RC	207	70	246	240	57	193	56	197	64	181
TTTCGAACATTGGGTG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CTTTCAAAGCCCGACT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TTCGCTGAGTCAGGTT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TATTTGTGCCTAGGTA	alt_223_RC	225	85	295	254	93	224	61	255	92	237
ACGATTTGTAATTTGC	alt_223_RC	22	5	35	24	4	31	3	31	10	27
TTCATCCGTTGTATAT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CAAGCTCCTACAATCC	alt_223_RC	50	14	39	47	13	35	12	42	18	47
CCAGCCTGTTCAACCA	alt_223_RC	7	30	8	8	31	3	31	2	39	5
ACGGTAATAAATCACA	alt_223_RC	113	22	141	114	33	98	41	96	30	105
TTTTATCTATATATAT	alt_223_RC	115	40	168	149	40	113	38	138	43	100
ACCCGATGATTCAAGA	alt_223_RC	188	38	235	248	51	190	49	185	57	145
GTCTGCCAAGCTGGTT	alt_223_RC	614	185	813	720	200	624	204	653	201	575
ACCCTTATTATCTCAT	alt_223_RC	267	84	384	315	77	278	60	324	73	258
TTTTCTGCTCCTGATT	alt_223_RC	299	64	410	290	78	296	79	286	74	242
GGTTGCTTCGTACGGG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
ACAAGCATATGGCAAC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
ATTGAGGTATTGTGAA	alt_223_RC	5	0	7	6	1	4	2	4	7	1
TACCTTTACTTTGACG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GCCCGGCTCTATTCAT	alt_223_RC	451	96	564	523	127	453	116	464	107	425
CCCGGCCATACCTAAG	alt_223_RC	72	32	110	101	44	83	50	87	44	81
TTGTTTTAGGCTTTTG	alt_223_RC	211	61	236	242	49	183	52	188	58	199
ATTCCCATCGGGGTCT	alt_223_RC	4	0	11	6	2	6	0	4	3	9
TTTTCGTACAGCCTAA	alt_223_RC	362	108	400	375	95	365	122	339	127	291
GCGCCTTTGCTTATAC	alt_223_RC	32	10	41	26	9	44	13	32	8	37
GTGATTGTCTGGTCCA	alt_223_RC	29	13	33	32	12	41	10	35	12	26
GCATCATTTATCGTAC	ref_223_RC	50	16	65	58	11	57	16	33	13	54
TTAAGCTTGTCTTGCT	alt_223_RC	152	53	206	179	40	176	63	121	39	129
CGAGAGAGAAAAAACA	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GATGTGACAGAGAACC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CCGGAACAGATTGTAG	alt_223_RC	168	60	202	171	71	142	61	126	81	133
TTCGTCCTTTTTCTTC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GTGGACAATGCCTCAA	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CTGCTATAAAAGCGCC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TGTGCTGCATTCTTTG	alt_223_RC	90	27	102	89	32	67	27	88	24	72
GGACCATACTCCCGCT	alt_223_RC	426	125	516	417	111	401	123	394	128	393
TATGGTGTGCTTCTGG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TCTCGTCCGGTTACGC	alt_223_RC	30	6	27	23	9	24	0	15	6	15
TACACACGGGTTGCAG	alt_223_RC	780	316	903	824	265	708	265	702	286	621
ATATCTTATGTTCATC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TCACTACGTGGTGCTT	alt_223_RC	106	29	131	101	31	89	29	83	40	90
TGGGGGTTCGTGACCG	alt_223_RC	137	59	260	232	35	221	54	191	38	149
CGACGGATTCGTTAGG	alt_223_RC	386	104	477	451	102	408	127	410	141	335
TATGAAAAAACGGCTG	alt_223_RC	216	55	223	233	57	199	47	212	45	171
GATAACATTTACTCTC	ref_223_RC	712	190	896	789	207	679	206	748	209	583
TCAGTCAGCGTTTTTA	alt_223_RC	38	8	51	50	13	42	21	52	14	38
CTGTTCTAGGATTATT	alt_223_RC	55	21	80	63	17	76	21	74	18	41
ATATAGGATCGCGCGA	alt_223_RC	150	42	156	153	30	162	37	143	32	127
AGGCTCGACGGATACC	alt_223_RC	180	55	190	183	50	158	63	162	62	154
GCTGTATTTCACCTTT	alt_223_RC	53	12	63	45	4	46	13	31	7	38
CGTGTTAAAGATTTTA	alt_223_RC	115	39	138	121	47	107	33	129	47	106
AGCTAGTTCTGGTTTG	alt_223_RC	87	25	119	89	17	79	20	78	20	63
TCACTTCCGTCGTTTC	alt_223_RC	61	68	72	77	81	46	72	70	65	56
CGAACGCCGCTGACGG	alt_223_RC	177	32	174	179	41	148	44	150	38	140
CACCCTTACCTCGCTA	alt_223_RC	55	24	86	76	20	61	23	62	24	56
AAATTTCCGGTTATGT	alt_223_RC	98	34	90	74	46	84	36	78	32	84
CGACGGTCAGTATAGC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TTCCCCGCATTGGGTC	alt_223_RC	201	70	202	177	92	151	93	147	108	156
CCCGACTGTATAGCCT	alt_223_RC	33	15	46	31	23	30	20	28	22	24
TCAATTCTGGCCACGA	alt_223_RC	560	149	716	613	116	505	123	523	153	479
CCCATTCGAAGATCGG	alt_223_RC	358	89	492	385	100	372	122	363	125	360
CGTCGCGCTTCCACGG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
AGTTGCTCTTTCTTAT	alt_223_RC	125	29	138	112	32	108	37	106	35	79
GCTTCGGTCGTTGCTA	alt_223_RC	98	28	105	110	26	85	27	83	28	71
TCGGGCTGGATTCTCG	alt_223_RC	29	9	45	39	6	32	10	30	4	22
GTCTGAGAGTCTCGTT	alt_223_RC	77	25	114	76	25	81	20	45	33	76
TTATGAGTGGCTCCCT	alt_223_RC	304	85	331	302	87	279	96	280	77	264
CCTCTTAGCGCTTTCT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
ATGTTCACACGACTTC	alt_223_RC	339	85	391	312	94	331	101	293	96	280
GGACTTCGTCAGCGCC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GTTTTGTCTCCTGCGT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TCGAATCCCCTGCTTG	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TGTGGTGGGGTGGGCG	alt_223_RC	74	12	94	83	15	96	30	66	20	84
TCGGCCTCGTGCTTGA	alt_223_RC	2	1	4	3	0	5	2	4	1	0
AGTGGGTGGAGTTGAT	alt_223_RC	36	14	44	40	12	33	5	28	8	36
GGTGACTCTATTTACC	alt_223_RC	144	52	225	162	41	157	47	141	37	130
ACGGTTGCAAAGCACT	alt_223_RC	581	151	742	676	171	558	155	626	153	531
GGCAACGGTTTGTTAG	alt_223_RC	59	17	71	76	17	50	18	61	11	51
GATATGGTCGTGCGCA	alt_223_RC	141	39	188	127	37	130	48	110	57	112
AGATACCATGCTTTAT	alt_223_RC	146	38	172	148	51	143	53	176	41	113
TAGTAACTAAGAGACC	alt_223_RC	185	51	270	232	51	187	58	174	57	159
TCATTAGCATCGCTTA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTGGTTAGTAAA	alt_223_RC	79	33	100	95	25	61	17	85	28	66
TAGGGTCTACAGTTAG	alt_223_RC	67	14	61	59	8	41	10	44	14	44
TCAATCTCGGGGTCAA	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GAGTGTGACATGCACG	alt_223_RC	222	69	282	246	78	217	82	197	77	199
TGCTGACAGGTCCTGC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CGCTTTCGTGATCAGG	alt_223_RC	336	105	438	377	96	319	101	377	84	312
CCTCCCTACGGGCGCA	alt_223_RC	47	30	75	64	33	43	18	53	35	41
AGTAAATTTATCTCTA	ref_223_RC	241	66	262	259	54	222	63	215	95	173
AAACCCTACTGTTGAT	alt_223_RC	79	15	76	74	24	73	25	70	23	71
GAAATTCAAGCCACCG	alt_223_RC	186	48	204	198	46	153	49	181	50	171
GCTCCCAGTACCTGTA	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GGCTAACTTGCCTTGT	alt_223_RC	281	88	288	256	49	261	67	257	63	239
GTGCTACTACACTAAG	alt_223_RC	259	73	338	283	83	231	86	249	95	229
AATCTGGCACTCCGCT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CCCATCTCCGTGCACT	alt_223_RC	180	61	245	229	52	194	59	188	61	181
CTCCGGGACTCGTGAA	alt_223_RC	8	2	11	6	2	7	7	10	4	5
ACCCCCTTTCTTTATG	alt_223_RC	79	21	86	74	31	70	40	68	23	62
CCTTTCACGTTTACGG	alt_223_RC	206	77	270	271	67	165	71	242	94	175
TCCGGTAACTCCACAT	alt_223_RC	70	30	59	51	39	59	40	65	30	43
ACACTTTGAGACCAAC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TACACACGGGTTGCAT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
ATCATTGTGTGGGCCA	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CCATGTAGGCACGATC	alt_223_RC	224	191	377	349	158	244	203	269	178	228
ATCCTGTACAAAACTC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GGCCTATTGACGGATG	alt_223_RC	32	7	27	46	11	34	11	30	7	31
AAGGTTCCACGTCTAC	alt_223_RC	54	13	55	61	15	51	12	34	17	39
TCGGTTATCTGGAATC	alt_223_RC	191	63	275	257	56	218	61	199	59	192
CCCATGGCTCCTGGGT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TCCTCACGAAACGGGT	alt_223_RC	744	187	890	853	222	698	215	703	190	643
CACCTCGTAAATACGC	alt_223_RC	0	0	0	0	0	0	0	0	0	0
GGAGTAAGCCTCAGAG	ref_223_RC	338	147	467	387	152	328	152	330	149	342
TGATCGGATATCCCAC	alt_223_RC	47	8	62	55	11	37	12	53	12	40
CTCTGGATACTCGGTT	alt_223_RC	60	13	83	62	20	65	20	65	23	59
TATCCGCCAGGTAGCA	alt_223_RC	27	7	37	29	3	33	12	23	11	13
TAGCTGCTGTGGGTCA	alt_223_RC	20	7	28	21	14	18	11	19	5	21
CAAGCGTGCTCAAATT	alt_223_RC	132	29	171	133	14	116	30	116	36	118
ATCGTCAGTGTCTCTT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
CAAGGCAGTTTAACCC	alt_223_RC	12	3	28	19	6	20	2	9	6	9
CCGGTCGTTAAATCCA	alt_223_RC	17	7	16	12	6	13	11	10	7	13
TAGATTTGACTTTCGG	alt_223_RC	150	46	192	138	34	162	50	134	32	138
TCAAGATCACACGTCG	alt_223_RC	39	9	57	38	16	36	14	24	20	32
TCTTCTGCGATAATGG	alt_223_RC	199	43	182	168	26	154	23	137	36	154
GTGTGCACGAATACCC	alt_223_RC	36	8	42	57	18	66	15	41	15	31
GTGTTTCGCTATTATA	alt_223_RC	0	0	0	0	0	0	0	0	0	0
AATTCACGTTTTTACT	alt_223_RC	134	27	188	130	42	126	32	144	33	78
CTCCTGCCTCCTATTT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
AGGCGCTCTCCTTATT	alt_223_RC	129	51	159	159	50	132	47	130	41	118
CGATCATGTTTTTACA	alt_223_RC	27	9	34	18	5	18	7	30	9	22
TAGTGTCGCATTCTCT	alt_223_RC	0	0	0	0	0	0	0	0	0	0
TTAGTTCGTTTGATAG	alt_223_RC	67	15	94	70	21	57	12	54	24	61
TGTCGATGCGAGCTGA	ref_223_RC	49	29	69	55	9	64	16	46	18	51
TCGGTGTGAGGCTATA	alt_223_RC	10	3	5	12	3	10	1	13	6	14
GCTGAGAGCCTTAGAC	alt_223_RC	194	70	232	221	54	190	38	164	38	176
CTTAGGGATGTACTTC	ref_4440_missing	0	0	1	3	1	0	1	0	1	1
ATTCGAATATTAGCCT	ref_4440_missing	23	34	26	11	28	13	40	23	40	18
TCTCCTAAGTTGCTGC	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
GATTATACCCAATTTG	ref_4440_missing	9	31	14	16	25	10	43	10	27	15
TTTATCGTATTTCGAT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TTTCATTGTCGTTCTG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
GTCATTATCTCAGTCA	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
AGTGAGTGGAGGTCTC	ref_4440_missing	30	25	22	18	58	16	62	19	46	17
CCAGATCCGCTCTGCC	ref_4440_missing	9	12	7	7	19	4	19	9	13	6
TCTACGTATCCGCCCC	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TATTCGTCTAGAACAG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
GAGCCTGAATTACGCG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
AGTACTTTAGAGTTGT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
GAGCCAAATATGAGCT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
GTCTGTCAGGGCGCTT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CCAGACTGTGGGTACT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TATACTATAAAGTGCG	ref_4440_missing	5	4	2	2	14	9	7	1	8	3
GAATCCCACCCTTCGC	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TGGGTTTAGTAGTAAA	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CGTCGGCGCAGTTAAC	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
GGGTTCGGAATCGGTC	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CTCTGTGTCTGGGATT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
ATTATGTGAGCCGCGT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TTTTGATACTTTCTAA	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
AGGGTGGACCTGAGCT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TTTCTACGAATCTGCT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
AGTTGTACTAGGGCTT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TTACCTGTTATTATCT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
GTCACGATACTCCGCT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TCAATCCTAGGGTCAG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CAGGAACATCCTTTGG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TTCTCGAGATTGTTCA	ref_4440_missing	33	76	34	30	56	28	70	32	69	24
GGCTTTTGTTGCTATT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TTAAATGGTGTTGTGT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
AATCCTTTTGGTTTTC	ref_4440_missing	9	8	18	4	13	5	12	9	19	6
ATTGGGCGAATATGCA	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
AGGTAGAGCTGATAAA	ref_4440_missing	6	8	9	5	3	11	11	4	12	13
AAAGAGTTTTCCAAGG	ref_4440_missing	6	20	9	17	28	13	35	10	41	10
GAGCCGTCGCCGGATC	ref_4440_missing	2	4	5	2	9	1	12	0	9	3
CTTTTATGGCTGCTCG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TGGATTTTTTGGTTTT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TTGGCCGACCCCCCTC	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
AACTCGTGACAACTGG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CTAGGATTGCAGGTGT	ref_4440_missing	1	0	2	0	6	3	10	0	7	1
TGTTCTGTGCCTAGTC	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CCGTATATTAGGCCTG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
TCCTATCTTTGCTGCA	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CGAATACATGTGTGAG	ref_4440_missing	3	4	3	1	6	1	7	2	7	1
TTTGATAGGCACACTC	ref_4440_missing	3	2	3	5	5	5	4	1	8	1
ACTTAGAAACGACTAT	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CGCTCTGATCACTCTG	ref_4440_missing	0	0	0	0	0	0	0	0	0	0
CTAATTTGGACAGTGT	ref_4440_missing	10	17	15	10	11	9	20	5	27	8
TAGCACCGTTTTATTT	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTGGCGGTCACCG	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCGGATTTGTTT	ref_1687_fdr	160	194	187	149	205	184	194	147	229	135
GGTGTAAGCGCAATAA	ref_1687_fdr	330	411	422	360	507	333	457	320	457	322
GGGATTCAATCCTCGG	ref_1687_fdr	37	56	59	53	43	57	56	49	51	41
CCGCTTCCACCTGGTG	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
AGACAGTAATCAGAGG	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
CACCGGGTGCTAATCT	ref_1687_fdr	4	9	13	10	11	12	20	4	10	5
ATTTCGGACCCGTATC	ref_1687_fdr	15	21	18	15	18	13	25	14	24	23
CCTTTCGCTGGTATTG	ref_1687_fdr	23	23	22	23	27	20	29	21	25	21
AAAATGAAAACACGGT	ref_1687_fdr	14	17	13	11	20	13	34	17	26	14
ATTATCACTAATGGCC	ref_1687_fdr	326	353	402	345	388	368	413	323	359	326
CTTTCCTGCTCGTTTG	ref_1687_fdr	3	3	6	2	5	10	4	4	9	4
TTCGGTTATCTTACAC	ref_1687_fdr	49	53	55	34	50	52	71	24	58	41
TTTGAGTGTTATCTTC	ref_1687_fdr	39	40	42	36	32	39	32	28	32	31
TCGTCTTGTGAACAGT	ref_1687_fdr	43	56	51	48	65	38	69	39	65	56
GAACTAGACCGATTTT	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
ACTATCGATTGGGGCA	ref_1687_fdr	49	70	62	40	47	49	78	44	61	35
TAGCATCGCGCTAATG	ref_1687_fdr	83	108	94	85	109	86	100	69	104	78
TTAAGTAAGGATGTAC	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTACTGTCAATCT	ref_1687_fdr	7	3	4	4	5	2	0	4	6	3
TGCCGGGACCTAGGCC	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGGTCCCGTCGTC	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
TATAATGGTGTAGCCA	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
CATTACATAAATTCCG	ref_1687_fdr	28	24	17	23	34	30	34	33	43	11
GAGTAGGGCGGGATTG	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
CCAACTGGGTGTGATA	alt_1687_fdr	10	33	8	9	32	8	33	10	29	10
CGTACCGTGGGTGTTG	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
TCCATCGCTGCTTCTG	ref_1687_fdr	7	6	4	10	10	3	19	3	8	9
GGGCAATGCTGGTGTC	ref_1687_fdr	13	13	13	15	15	8	12	11	16	10
TGAAGTTTTGCGAAGA	ref_1687_fdr	66	68	77	74	69	54	62	49	60	55
CGCAGACACAACGGCC	ref_1687_fdr	22	25	38	34	31	23	28	30	24	16
ACAGCTGCATTGCCCT	ref_1687_fdr	56	95	74	70	95	77	106	70	99	62
TGGACGGCTTGTTAAG	ref_1687_fdr	48	63	50	42	70	47	61	37	64	27
AAGGGGCACGGGAGAT	ref_1687_fdr	273	261	352	282	288	248	325	261	305	224
CGTCTTTTGCTTGCGG	ref_1687_fdr	13	17	9	11	23	17	10	12	15	5
CTGTTCTACCGGTAGA	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
AAACTTCTAGATTGGT	ref_1687_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCGTTGTTTAGAG	ref_1687_fdr	3	5	8	7	6	2	3	4	14	4
GCGCCAAGCAAAATAT	ref_1687_fdr	13	16	19	17	11	16	23	12	20	12
ATCGGATTTATCTTGT	ref_1687_fdr	29	52	31	43	37	44	40	33	58	32
CTCTGTCCTTTACTAC	ref_1687_fdr	3	2	3	1	3	2	3	3	8	2
TCTCCCTGGGGCATTA	ref_1687_fdr	27	33	20	22	34	13	34	18	30	22
GAAGCGCTCTAATCGT	ref_1150_fdr	82	59	124	109	59	122	57	99	51	82
ATGAAGCCCGTCTTAC	ref_1150_fdr	21	34	30	12	30	15	29	21	48	13
TGGTGTTTGTGTTTTG	ref_1150_fdr	59	45	95	102	52	75	53	73	42	82
TTCACTTGCAGGTATA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGTTGGAAATGCT	ref_1150_fdr	330	164	373	326	166	259	165	301	163	278
TCGCGGGACCGGTACC	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCATTTGGCGAGC	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGCTCTGCGGTCA	ref_1150_fdr	98	43	106	103	39	81	52	62	41	69
GTCCGCGGCAGTCACA	ref_1150_fdr	62	26	58	59	23	49	44	47	26	48
TCAGCGTCAATACAAT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
GCAATGGCGTCTCCAA	ref_1150_fdr	79	44	114	115	35	79	35	72	45	90
CTTCTAACTTACACCA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGTTGGTTTTGAA	ref_1150_fdr	158	60	176	124	52	117	63	129	64	105
GTTTTATCCGACTCCT	ref_1150_fdr	22	19	26	29	17	18	9	22	15	14
ACATACCATCGTCCGT	ref_1150_fdr	10	10	17	15	4	10	4	9	10	11
GACCCTTTGACTTCTA	ref_1150_fdr	114	56	102	94	54	99	68	98	67	101
CCTAGACATAGGATTA	ref_1150_fdr	60	42	99	63	38	57	45	66	35	48
CGGCTTGATCTTTGAT	ref_1150_fdr	398	175	499	357	182	370	191	394	205	360
GTTACGTTCGATAATT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TCCAATAGACGGCTCC	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
GAATCGGGTATGAGGC	ref_1150_fdr	21	24	41	15	15	30	15	28	27	31
CGTATTCGTAGGTTTG	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGCTCAGATGAAT	ref_1150_fdr	68	35	67	50	22	58	29	61	30	60
ACATCTCCTGCCCTTA	ref_1150_fdr	16	8	11	14	10	6	8	6	10	13
TTCACAGCTCGCCGTC	ref_1150_fdr	1	3	4	9	3	7	10	7	7	2
CAAGTCGATAAGATTG	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGCGTTCTAACAT	ref_1150_fdr	73	28	63	64	30	45	26	74	41	54
TGGTCATGCAGACTCC	ref_1150_fdr	51	14	41	27	16	27	14	32	21	26
AGAGGGTACTATGCAA	ref_1150_fdr	167	73	186	169	63	158	103	162	94	138
TCCGGTAATGTAGAGC	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTACGAGAACATA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
CTTCACTATTTATAGT	ref_1150_fdr	29	6	19	14	10	22	10	20	10	32
GTGTTTTATTCCTCAC	ref_1150_fdr	182	106	207	200	102	183	89	158	101	148
ACGTCTAATCTGTTAT	ref_1150_fdr	38	14	55	29	29	33	14	34	22	29
TATCGATCATAGTTGC	ref_1150_fdr	50	33	34	28	21	32	42	43	23	35
TGTCTTTCTGTTCCGT	alt_1150_fdr	12	0	11	12	5	4	5	11	0	9
TGTACCAATCTCGGCC	ref_1150_fdr	59	29	61	38	32	46	40	59	28	41
TGTGTTTGATCCGACG	ref_1150_fdr	40	24	48	35	26	47	22	59	22	38
GCTCGGAAACTAAAGG	ref_1150_fdr	17	6	33	20	11	22	14	16	12	25
TCCACAGGGGACTATT	ref_1150_fdr	361	141	393	326	160	324	173	304	166	293
TTCCCTCGCGCGGACG	ref_1150_fdr	9	10	10	9	6	15	4	14	5	2
TGCCTATTGTTGATTT	ref_1150_fdr	60	46	97	57	27	59	31	59	50	56
TACGCCACGGGATCGA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
CGTTGCGGTAATCTTA	ref_1150_fdr	204	88	316	237	95	236	106	214	124	213
CTGCATTATACATGGC	ref_1150_fdr	15	5	21	13	5	24	5	17	5	12
GTTTGAGTCATGCAAG	ref_1150_fdr	180	80	215	181	88	172	93	185	87	156
GACTGGACCTCCATTA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
CATTACAATTCTGCCA	ref_1150_fdr	337	151	398	303	158	304	149	328	166	312
GTCAGGATCCTTGGTC	ref_1150_fdr	170	86	176	158	81	174	89	143	100	112
GCCCTGCTCTTGAACA	ref_1150_fdr	16	16	18	21	12	9	10	24	13	7
CCCCTGCGCGGCCAAT	ref_1150_fdr	23	25	30	36	22	38	19	28	26	26
TCTGCGCTCGATGTCG	ref_1150_fdr	56	41	87	81	45	71	27	73	41	75
TGAAAGAGTACACTGA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
CACATCGGTCCTCGCA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGTTATTTTCGTT	ref_1150_fdr	54	29	92	85	38	64	30	59	33	65
ATTCGAGAGAATGCAT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
GAGGTTCTCGCATAGT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCGCCGCTACGTG	ref_1150_fdr	46	35	86	51	43	56	34	63	46	47
GGCCCGTACGCTAAAA	ref_1150_fdr	87	31	78	107	46	68	46	59	50	64
TTGCGGCATGGGGTCT	ref_1150_fdr	70	34	89	65	41	77	23	80	31	56
GCCATAAGCTTGGGCA	ref_1150_fdr	52	44	57	66	47	56	35	53	35	49
TCTTTACAACTCGGCC	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
AAGATTTTGATTCAAG	ref_1150_fdr	33	13	49	26	21	29	16	23	14	21
CGGGGCTCTGGAAGAC	ref_1150_fdr	7	1	14	4	5	6	9	1	3	10
GTTTTACTAAGAAACT	ref_1150_fdr	71	47	98	85	49	82	31	72	42	81
CGGACCTCAGAGCGAT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGTCTCAATTTAA	ref_1150_fdr	68	23	51	45	25	48	21	38	30	44
TCTTTAAGATGGATTG	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCGGGTAGGCTC	ref_1150_fdr	67	44	57	56	42	50	40	43	50	56
GGCTAACAAAGACACA	ref_1150_fdr	45	23	54	47	32	55	29	48	32	46
TCTATGTTATTACAAG	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGCTCGGAATTAC	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TATATTGGTCACTCCA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTCGTCTTGTTTC	ref_1150_fdr	184	75	197	182	66	170	117	166	113	161
CCAAGCATCTTGTCAA	ref_1150_fdr	3	3	6	3	3	3	5	6	5	8
GTGTTCTTCTTCTTCT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TACACTCGGTGAGATC	ref_1150_fdr	19	17	30	30	22	38	20	25	10	37
AAAACTAGCGAAACTT	ref_1150_fdr	30	8	35	25	13	28	15	27	13	29
GCACGAGGTATTCGTG	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
AAAGGGACTCGTGAGC	ref_1150_fdr	18	7	22	26	4	19	7	22	3	24
CCCCCGCCGCGCCCTG	ref_1150_fdr	36	22	33	22	31	22	35	25	22	35
TAGCTCCCAAATCTTG	ref_1150_fdr	132	72	168	116	64	104	63	108	64	136
CGCGATGTAGCAGTTT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTATGGGCAATGA	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
GGCATTCTGACTCTGG	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
AATCACCATTTATTTG	ref_1150_fdr	32	26	49	51	22	37	26	24	23	42
GATAGCCAGCTCTACT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTATAGTTGAATG	ref_1150_fdr	32	17	35	29	20	28	23	14	25	19
CCTGTTGTATTGTAGG	ref_1150_fdr	55	21	56	36	26	43	23	27	17	42
CTCATTCGTTGTATGA	ref_1150_fdr	120	63	120	85	68	119	77	126	73	122
GCTTGGTCTCTAATGT	ref_1150_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTGCAGCGTTCTT	ref_1150_fdr	116	70	141	107	51	117	57	83	62	104
AGTATTGCTATGATCT	ref_1150_fdr	11	8	19	13	5	15	5	12	5	8
GCTCGCATCGGCAGCT	alt_1616_reverse	13	32	27	22	30	12	34	13	48	17
CATTACGTTATAACTA	alt_1616_reverse	21	48	18	15	46	26	33	23	44	17
TCGATACCAATTACTC	alt_1616_reverse	27	60	40	29	63	27	73	31	68	25
GTTGGAACAAGTTCTA	alt_1616_reverse	12	17	25	16	22	10	30	17	24	12
CAATCGTAGGGACTGA	alt_1616_reverse	6	9	4	3	11	6	9	9	8	3
ACTTAGTTCTTCTTGT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GAAATTATGCTGTCTC	alt_1616_reverse	14	36	24	22	28	28	47	20	38	19
AGGACGTCAGGGACTT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCAACTGCAAGTA	alt_1616_reverse	20	45	26	22	52	27	40	18	53	23
ATTTGAGAAGTTACAT	alt_1616_reverse	2	6	11	3	7	5	12	4	5	3
CCCTCGACGGTGCTAG	alt_1616_reverse	13	111	20	12	113	12	114	11	144	15
CTAACCATGTCCTTAC	alt_1616_reverse	1	1	1	2	3	0	3	3	1	1
CTGTGAATGTATGTAA	alt_1616_reverse	2	4	1	1	5	3	4	3	2	2
CATGGTGAACGGTGAG	alt_1616_reverse	23	31	19	24	34	20	35	15	33	18
TATCGATAGACTAACG	alt_1616_reverse	3	4	6	7	11	4	7	8	9	5
ATTCGTTTTACGTCGT	alt_1616_reverse	22	27	22	12	23	19	18	17	21	11
ATTCTGGGGATGTGTG	alt_1616_reverse	4	6	4	5	5	2	5	0	9	3
ACCGCGTCTTCCCCTT	alt_1616_reverse	22	41	21	34	55	17	47	16	54	18
TGGTTTCGCCAATAAG	alt_1616_reverse	18	34	10	16	44	15	39	20	35	15
TGCCAGGAGTATGAAC	ref_1616_reverse	4	10	6	7	16	8	9	3	12	5
CAAAATCGCACGTGCT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
AACCTCATTCAGGAGG	alt_1616_reverse	41	69	38	35	75	23	71	28	70	25
GAGCATCGACATTCAG	alt_1616_reverse	3	5	3	1	3	2	6	0	2	3
TGATATGTCATTACCT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GAATCGACGATATGAA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GGTACGATTAGCTATA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTGCAGCACGCAC	alt_1616_reverse	4	27	7	13	16	10	20	4	14	9
AACTGGATTTTTGTAC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GGGATCAACCGATTTC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CATAGTGCTGCAAATG	alt_1616_reverse	2	3	1	3	7	4	8	0	4	0
GCGTCTTATGATGTGT	alt_1616_reverse	15	40	33	15	36	24	39	15	28	25
TGGGTCATTGTTGACT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCTTGAGATTGAC	alt_1616_reverse	13	28	8	12	28	11	17	9	25	12
TTCAAAATTCTGTTGT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTACCCGCAAGTGCCT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CCACACCTCAACCACT	alt_1616_reverse	0	20	3	3	16	6	8	4	27	0
CGGAAAGGCACCTAAG	alt_1616_reverse	2	19	5	3	13	8	21	11	17	6
CTTTCTGCGAGCAGGG	alt_1616_reverse	1	4	1	2	3	0	0	1	0	2
CCAGGGTCGTCTAGCC	alt_1616_reverse	8	15	8	8	12	7	14	9	24	2
TGTGCATAGTTGGGTG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACTGGGCCAACGTAGT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGGCGGTGATGAG	alt_1616_reverse	2	5	8	11	5	7	11	3	10	1
CTGTCAACAGGGTGAC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGCAGTCTGCTTG	alt_1616_reverse	2	12	4	4	2	8	11	6	8	1
TGGATTTAGCGACTAA	alt_1616_reverse	11	15	9	6	14	6	14	11	15	8
TGACGCCCCTCTGATG	alt_1616_reverse	13	23	32	12	34	18	21	9	27	15
GTTATGCAAAGCGTAA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGCGAGTGAATCA	alt_1616_reverse	1	2	1	5	4	4	1	3	3	3
CGGTTATGTCCTTATA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAGCCCTTTCAAC	alt_1616_reverse	2	2	3	0	2	1	2	1	4	1
ATTTGGTAGCGTCAAA	alt_1616_reverse	3	18	6	8	16	9	22	13	16	7
GTTATAAAGCGTGTCG	alt_1616_reverse	15	32	13	15	25	13	39	11	30	8
TGGTCTGTTAGCACAT	alt_1616_reverse	34	64	35	26	72	32	54	18	50	40
GGTGTGTCACTTTGTG	alt_1616_reverse	1	0	0	0	0	0	0	0	0	0
AACTTAGTTGGTGCGA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCGAGTGGGACTC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CATATCCCTTAGAAAC	alt_1616_reverse	1	2	1	0	2	0	3	1	0	0
TGGCGCAACCAAAGAG	alt_1616_reverse	3	7	1	1	8	2	8	0	3	4
CGGTGTGTTTCTTGCG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTTAAGCTTGCCG	alt_1616_reverse	3	9	7	3	10	2	7	0	8	8
GAATCCCAGTAGGGGC	alt_1616_reverse	20	41	21	23	54	18	48	10	61	10
GTCGGTCCTGGTCACA	alt_1616_reverse	18	61	43	33	54	35	72	31	86	31
AACGATTCTCGCGCGT	alt_1616_reverse	13	21	20	11	26	12	31	14	26	7
ATCGGCTGAGCCTAGG	alt_1616_reverse	6	30	6	16	12	10	34	14	33	12
TGTATTCCTTCGCAAT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCCCACTTGTTAG	alt_1616_reverse	3	3	1	2	5	2	4	3	8	0
GCTTGTCTAGTGTTGT	alt_1616_reverse	5	8	4	3	11	4	10	5	8	3
ACGGTAGCCAGCCTTT	alt_1616_reverse	5	10	7	8	3	5	12	3	7	3
CGAGCCGGATATAGCT	alt_1616_reverse	22	51	30	29	66	28	48	21	57	30
GCGCCATTGAGACGGA	ref_1616_reverse	42	67	63	34	50	38	73	30	69	33
TCCGTTGTCTAGCTTT	alt_1616_reverse	4	10	10	5	13	5	16	2	12	7
CAACAGATTATTACTA	alt_1616_reverse	36	64	35	29	57	38	33	21	68	15
TAGTGCCTCGCGTACT	alt_1616_reverse	32	41	33	31	52	26	61	28	44	26
GTCTGCTAGCCTATCC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTAGACCTTTCTTCTA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATCATCACCTAGCGAT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGGAGTAGCCATT	alt_1616_reverse	35	98	52	34	77	41	83	30	103	38
GCTGCTCGTTTATTTT	alt_1616_reverse	4	7	9	4	18	7	7	1	8	4
ACAGCGGATCCAGTGA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTACACGGGTCAT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTGCATGGACTTCTTT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
AAGGCAACTGGCCTCG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACACCCGCACTCACTC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
AATTAATGTTTTTGTT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTCCAATTGGTTT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTAGAGGGAACCT	alt_1616_reverse	12	22	4	10	13	6	21	5	21	6
ATGGTCTACCATATGG	alt_1616_reverse	4	11	6	3	5	3	6	2	8	6
GCCGTGAGTAGAGGAA	alt_1616_reverse	7	18	6	8	18	12	19	9	29	11
TGAAAATCTCGGCTAA	alt_1616_reverse	2	4	6	4	5	2	5	2	4	4
TTACGACGTTTTGTGA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TGCATAGGTTAGATTG	alt_1616_reverse	9	40	26	8	34	8	22	9	39	23
CACCATTCTGCTAGAG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTGTTTTTATGCC	alt_1616_reverse	7	10	8	6	29	2	18	4	12	5
GCCTGGTGGTTGCCTA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TATTGACAAACTAGCA	alt_1616_reverse	1	5	1	2	3	3	3	6	6	4
GATCAACATCTGCCGG	alt_1616_reverse	11	18	26	6	20	17	24	21	30	11
GGTGTACTATATCTCT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
AGCATTAGTCATGGCT	alt_1616_reverse	16	42	27	21	37	29	31	14	23	19
CGGGCTTTTTCAACTA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATGCAACGCTTGTTCC	alt_1616_reverse	14	32	14	11	24	10	21	16	30	14
ATCCCAATCATTTTTG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTTGAGGATGTCG	alt_1616_reverse	22	42	26	22	37	24	53	23	42	9
CAGCTGACGTGGCATG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGGAGGGGTACCC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAGGATCTCGCTT	alt_1616_reverse	3	7	4	7	5	4	5	5	11	6
TTCTTACCCTTTTTAC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTACCACAACGTGTAT	alt_1616_reverse	5	10	1	1	6	8	7	3	8	1
CCCAAGAAGACACCCA	alt_1616_reverse	0	3	2	0	1	2	2	1	1	1
TTGGATTTCGTCCAGC	alt_1616_reverse	0	2	1	0	0	0	1	0	1	0
ACATCCATCATTATAT	alt_1616_reverse	2	4	2	1	3	2	4	4	10	1
GTACCATTTAATTTCA	alt_1616_reverse	4	6	1	3	11	3	4	6	4	3
GTATGTAGTGCGTTTT	alt_1616_reverse	91	208	98	79	176	79	254	64	224	84
GCATTCCGCCTTCGTG	alt_1616_reverse	28	44	34	22	41	20	44	17	41	25
TCACGAGAGTTGTTCA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTTAACAACACATCTC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGTGTCACTGGG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTTGTTTCGCTCT	alt_1616_reverse	26	31	30	19	46	13	21	18	49	24
CGTTATAGCGGACGCC	alt_1616_reverse	3	13	8	14	25	9	19	8	16	3
GTTAGTTCCGGCATAA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GAAGACACAAGGATTA	alt_1616_reverse	8	6	4	11	12	8	11	3	5	4
GAAAGCGCAACATTCT	alt_1616_reverse	9	13	8	10	10	8	10	3	13	2
CTGATCATACGTACTC	alt_1616_reverse	6	21	3	1	18	3	30	0	18	4
ATTAAGAAGCCGGGGA	alt_1616_reverse	36	64	46	27	63	41	62	37	82	27
TTATGACTCTGCTTAG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATATAGACTCTTCCTC	alt_1616_reverse	20	41	22	22	47	13	44	16	45	20
GCTTCCTAGTTTAATG	alt_1616_reverse	15	22	15	13	22	10	27	13	29	10
ACGCTGTTTCGAGTTT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTGAAAAGTTTG	alt_1616_reverse	1	4	0	1	4	3	7	0	3	2
ATACACCGTACCGGAA	alt_1616_reverse	19	55	27	18	34	22	48	9	41	16
CGTTTAATTCGTTCCG	alt_1616_reverse	43	77	54	42	64	44	85	46	80	33
ATTTGAATCAGCAGAG	alt_1616_reverse	19	73	41	22	72	40	58	33	73	28
TCACCAAGCTCGGGCG	alt_1616_reverse	1	11	3	4	18	2	14	3	15	0
CCACTGAAAATTGTCC	alt_1616_reverse	2	2	1	0	11	1	7	1	4	1
CTCAGGGCCTGAGCCT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCCACATATTAAA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTTTTATAGGGTT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGTATGAAGGGCT	alt_1616_reverse	5	21	14	9	21	18	20	13	24	10
TCCGACGCACCACCAC	alt_1616_reverse	2	5	6	3	8	4	10	3	2	2
CTCGCCCCCAGGCCGG	alt_1616_reverse	26	38	25	20	42	23	38	11	45	26
ATGTTAGTACTCTCGG	alt_1616_reverse	23	32	25	25	55	14	57	26	43	21
CTATAAGCTTTGCGCG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CGCGACAGCCATGTTT	alt_1616_reverse	7	12	11	6	5	6	12	6	14	8
GGTACACTGTCCGGTT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGCTGGACGCTCC	alt_1616_reverse	2	4	3	2	12	3	7	3	6	2
CCTGCTGCGCTTTGCA	alt_1616_reverse	4	12	13	4	12	3	13	3	7	2
GTCTGGATTGAGCCCT	alt_1616_reverse	2	1	3	1	3	0	3	1	7	2
AATATTGTGTTAAATT	alt_1616_reverse	16	35	18	14	37	19	32	8	42	15
AATCACGTTCATTCGG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGGGTGACGATGC	alt_1616_reverse	1	7	7	3	5	5	7	4	4	1
AGGGTTGTAGACCGTA	alt_1616_reverse	8	24	8	12	12	14	26	7	10	13
ACATCTTATTGACACA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATACCGTATTTGTTTC	alt_1616_reverse	7	36	19	16	28	10	28	5	23	8
GGGCTCCTGGTTTATT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GACGAGGGAGCTAACA	alt_1616_reverse	44	95	43	42	81	33	88	28	103	36
CCCTGAGGGAACTAAG	alt_1616_reverse	5	22	9	7	20	16	19	6	21	4
GCGGTTAAACATTCTG	alt_1616_reverse	5	7	3	4	5	2	4	0	2	2
GGCGTGGTACGCTCTT	alt_1616_reverse	5	7	4	8	4	3	6	3	3	5
TTTGATTGTGATAGGC	alt_1616_reverse	37	66	37	30	71	32	68	46	94	28
GATCTGGCCGGTATAT	alt_1616_reverse	4	10	4	5	10	4	13	1	9	4
AGGTATGTTGAATGCA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
AACTTCTGCGGTCTTG	alt_1616_reverse	15	31	35	14	36	14	37	21	39	18
TCTTCGTGGTATACAC	alt_1616_reverse	4	17	6	8	13	4	13	8	16	4
CCCTCACTGCGATTTC	alt_1616_reverse	2	8	4	2	8	1	5	6	6	2
AGTCGTTTTACTTTGA	alt_1616_reverse	100	172	93	89	190	87	197	80	201	96
ATCATGTTAGTTTCAT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTTTTAGAGGAAT	alt_1616_reverse	22	82	33	33	68	36	64	24	72	22
TATGTGGTTACGGCAA	alt_1616_reverse	7	24	8	9	16	13	21	11	29	8
AATGCTCACTGTAGGC	alt_1616_reverse	3	5	3	2	4	5	6	2	4	3
GTCAAGTATTGGGGCA	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAATACAACTTCT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CGTAGTGTGTTATCGT	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGTATTTGCCGTC	alt_1616_reverse	4	7	8	7	15	4	10	4	11	4
GTCGCGAACCTAAGCT	alt_1616_reverse	2	3	3	0	7	2	8	2	13	1
CTGCCTCCTGAGCGTC	alt_1616_reverse	19	33	16	25	45	13	41	24	53	21
ATGGTTCGGGTAATTC	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
CACGAACACGGAGTTG	alt_1616_reverse	38	43	43	30	56	31	46	25	50	26
AGCCATTATGCAGCAG	alt_1616_reverse	0	0	0	0	0	0	0	0	0	0
AATCCCCGACGGAGAT	alt_1762_upstream	26	27	48	31	40	37	41	35	29	31
TAATTTACTTTGGGAC	alt_1762_upstream	190	141	223	190	123	179	142	183	127	192
TAGTGGGCTATTTCCT	alt_1762_upstream	84	46	83	82	61	89	74	84	79	78
CCTTTAGCACTCCTGA	alt_1762_upstream	4	0	2	4	3	2	0	0	0	3
GCTTGGTCCCGGGTCA	alt_1762_upstream	35	15	34	47	25	30	21	45	28	36
GACTGGTTTTCCTATC	alt_1762_upstream	15	9	16	11	8	16	16	17	11	12
AGTCTCCAACTCCATT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGTTCATTGCCGC	alt_1762_upstream	30	19	41	35	23	40	27	31	22	31
CCCGATGTTAGGGTGT	alt_1762_upstream	2	3	3	1	5	6	1	3	0	5
TATTCAGCAGTGGGCT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGGTTCAAATGTA	alt_1762_upstream	32	29	43	38	23	28	21	39	19	34
TTAAGGCATGTTCCGC	alt_1762_upstream	19	15	34	19	21	26	22	22	13	25
AGGCTACGTTCAGTGT	ref_1762_upstream	209	171	274	264	172	209	173	212	176	199
CTATCAGCTTGCAGTC	alt_1762_upstream	36	24	62	27	37	34	36	41	36	30
AAGGCTGGGTGCATCG	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGAGCAAACGCAA	alt_1762_upstream	14	9	27	15	14	20	13	16	12	14
ACAGTCGGTACATAAA	alt_1762_upstream	6	4	10	10	4	4	15	4	5	10
CTAGCGATGTCAGATG	alt_1762_upstream	3	5	2	4	3	4	2	3	2	4
TGTACGTGTTTGCAAC	alt_1762_upstream	28	22	35	32	33	22	28	45	31	24
TTGTTAGCAGCCTTCA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	1
ATACAGTCCCGCTGAT	alt_1762_upstream	54	28	53	66	38	43	38	55	49	57
CCGGGTTATGAGTGCT	ref_1762_upstream	1	5	2	3	2	5	5	3	7	7
TACGGGCGATTCAGTC	alt_1762_upstream	13	11	18	18	10	12	13	18	9	22
TTCGGCAACCGACTAT	alt_1762_upstream	61	92	58	50	90	45	80	40	95	44
TTAGCGAACGCTATAC	alt_1762_upstream	8	12	11	14	9	6	12	5	19	5
TAAATATGTGTGTTCT	alt_1762_upstream	268	208	351	268	209	233	203	285	217	250
TCAGGGGCGGGGGGGG	alt_1762_upstream	1	0	0	0	1	0	1	0	0	2
TACACGAGACCTGCGA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
GGAATAGACCTCCCTC	alt_1762_upstream	17	6	21	24	15	29	13	18	6	19
CTGGTTATCATACTGT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
GCTATGCGCGTGGTCC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TCACACTCCGGAAGAT	alt_1762_upstream	7	14	9	12	14	6	16	11	15	7
ACTAAATCTTTCCAAC	alt_1762_upstream	55	35	75	59	35	66	44	51	32	38
TTCTTCCGGTGTTCTA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTTTTCCACGATT	alt_1762_upstream	36	30	58	36	47	44	37	45	45	31
GGAGCAGAAGCAGGTA	alt_1762_upstream	42	31	57	54	35	55	25	33	40	35
TGCTATGGGTCCACAT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGAGTCTCAGCCA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CTGGGATTCCAATGTT	alt_1762_upstream	25	20	39	24	20	28	17	23	15	20
GGTCTACTTTTCGTTT	alt_1762_upstream	52	22	51	47	27	37	28	37	30	46
CAGACGCATTTACTCA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGACTATTCCAGCCCT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGCACTTCTCTTC	alt_1762_upstream	12	20	31	20	13	27	17	22	8	28
GAATTGTTCGGTTCTT	alt_1762_upstream	449	283	562	491	284	439	264	418	275	399
ACCCGTTCATAAACTT	alt_1762_upstream	21	8	22	18	9	20	9	21	11	12
TGTTTACCTTAATTAG	alt_1762_upstream	90	60	122	108	73	84	65	87	72	73
GAAGCAGGTGACTGGA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CATTAGGTATCCCCGA	alt_1762_upstream	19	27	21	28	19	17	13	15	36	30
CTCGCCCGGGCATGTC	alt_1762_upstream	15	15	21	14	11	24	17	8	20	16
TGACCTCTGAGGCAAT	alt_1762_upstream	175	122	187	157	105	141	141	127	123	112
TTCTGTGCATCCACAG	alt_1762_upstream	63	35	94	72	48	83	62	75	67	60
GCAATTACAACAGATT	alt_1762_upstream	402	267	476	451	299	398	279	389	296	347
CGCCCGGCATATCGAC	alt_1762_upstream	17	12	15	14	10	21	12	19	16	18
AAAGTCCTTTCTGTCC	alt_1762_upstream	104	69	125	100	49	90	53	98	71	75
TATTCGCCTGTTCTTG	alt_1762_upstream	20	17	35	21	10	33	13	30	11	18
TCCGCCGGCTTAACTC	alt_1762_upstream	203	116	261	227	138	162	114	190	133	173
TAGACTCTTTTAGAGT	alt_1762_upstream	10	6	13	9	12	8	6	8	5	9
TTATTCGAACTTGATT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTAGCTGCCTTCA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCATCATCTTTGG	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CGTAAATCAAACACTT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGATAAGCAGGGC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTGGGTCGTGCGT	alt_1762_upstream	81	36	96	75	53	71	50	70	57	78
GGGCAATTTTCAAGTT	alt_1762_upstream	31	17	27	27	8	30	27	21	15	17
CTCCCCGATCGCTTAC	alt_1762_upstream	13	66	12	14	74	6	75	13	74	7
GGGTACCTTTGATGGA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAACTCTAGCTTT	alt_1762_upstream	22	22	27	22	20	19	25	25	16	20
CTCCTCGTTTCGAATC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CATCCGAGCCTTTGAG	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAATCGGGGTGTA	ref_1762_upstream	25	17	25	30	11	23	6	21	20	14
GGATGTGGAACTTTTC	alt_1762_upstream	18	10	17	18	11	12	16	13	9	10
TTGATTAGTCTTACTC	alt_1762_upstream	83	65	85	83	70	83	48	70	62	62
TCGTTTCGTATCAGTA	alt_1762_upstream	37	27	42	28	26	32	33	24	18	27
TTATGCTTGGAAAATT	alt_1762_upstream	75	55	79	70	42	62	57	65	60	59
TATACGACCCTGGGGT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCGGCTGGACTTA	alt_1762_upstream	34	27	60	40	24	33	33	45	30	49
CTTAAACGCGTCAAGC	alt_1762_upstream	9	3	8	6	5	6	5	10	8	6
TCGGGCAGGGACCTTT	alt_1762_upstream	60	40	65	67	45	65	50	66	51	62
GGTTTATCATTCCTCC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGTACGTCCCGGT	alt_1762_upstream	72	48	89	102	49	73	45	82	41	80
TTTGGTACTATTTCTG	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CGAACACGTTTCGTTT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGTATGTTTTTAGAGT	alt_1762_upstream	9	14	21	15	16	21	6	14	6	10
TTCGGTGCGCGCCCAG	alt_1762_upstream	30	13	18	19	20	21	18	20	19	23
CAAATTATAATGGTAA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
AGTACAAGTCGTGGCC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGCGAACATGCCC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
ATACTCATCCTGCCGA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
ATCTACCATTATCTGC	alt_1762_upstream	39	27	37	40	15	31	32	22	23	39
TCAGCAACGGGGCGGG	alt_1762_upstream	46	56	73	86	71	57	64	65	76	39
TCGTCCTGCCACTTTT	alt_1762_upstream	9	11	7	9	2	5	5	3	5	4
TATATGGTGCGAGTGT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
AATTGCTTCTCTCTGG	alt_1762_upstream	52	35	53	61	35	56	39	45	28	29
GATCCGTTTAATAAAG	alt_1762_upstream	74	45	102	100	53	101	71	61	81	78
TTATGGTGGCCGTGTT	alt_1762_upstream	66	31	66	60	35	53	39	79	46	61
CATCTGAACTTCACCC	alt_1762_upstream	47	32	53	54	23	35	16	49	32	44
TCTATGGCCCAATCGC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TAGCATAATAATTAGC	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATGGCTTACCAA	alt_1762_upstream	23	15	18	16	17	15	13	18	15	16
ACTAGGGAACAATTTG	alt_1762_upstream	148	104	162	144	106	112	99	145	125	114
CCTAGCTCTTGGACGT	alt_1762_upstream	33	23	24	29	19	29	19	27	21	18
TCAGCGTGCATCTTGC	alt_1762_upstream	48	37	67	38	28	48	30	38	34	35
AGGCGACATTGACTTA	alt_1762_upstream	17	1	15	13	8	10	6	13	5	12
TTGCTTTCTATTGATC	alt_1762_upstream	9	9	13	16	10	12	9	9	3	1
GGCTATTGTCTTTTCT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAGGCTGAGTACC	alt_1762_upstream	115	84	168	146	70	113	94	110	78	107
GATATGAGCGCACCGA	alt_1762_upstream	37	29	43	49	28	42	19	39	28	43
AAGCTTATGGTTTATG	alt_1762_upstream	83	45	78	78	50	76	43	64	48	83
AGGTCCAGTATAGGTG	alt_1762_upstream	48	24	44	48	29	41	23	32	25	35
GAGGAGGCCTGCGTGA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGCACGCGGTTTT	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
TAATGGTTCGATCTCC	alt_1762_upstream	96	74	111	120	46	105	70	82	73	108
ACATGCTGTCTCAATT	alt_1762_upstream	81	39	93	86	46	93	47	66	53	71
TTGGCTTCAGTCTCTG	alt_1762_upstream	23	14	14	21	16	20	16	15	16	16
TCCTACATAGGCGCGC	alt_1762_upstream	12	12	25	17	17	19	15	14	16	7
ACTTGATTCTTGTCCG	ref_1762_upstream	219	161	287	259	127	244	151	229	140	207
AAAACTGTCCAGTGTA	alt_1762_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCCATTCTCCTCA	alt_1762_upstream	65	67	74	94	90	71	96	78	84	69
CGTTGGTAGGTGAGTC	ref_2632_fdr	50	36	47	47	30	56	43	41	36	36
TCAACACGGAAATGTT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TCATGAGTATGCCTTT	ref_2632_fdr	32	17	22	37	23	17	28	16	22	23
ATGGTTTACCTGGGTA	alt_2632_fdr	11	8	16	13	7	17	4	15	9	6
ACTACACAGACGAAAT	alt_2632_fdr	29	22	40	45	20	37	24	36	20	27
CACGGGGTATGCAGTC	alt_2632_fdr	63	52	72	49	46	55	47	39	58	49
TCGCTTGAGTGATATC	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
ACGACGCAGCGTTCGA	ref_2632_fdr	68	46	64	66	36	72	53	48	54	43
TCTAGTTGATACTCCT	ref_2632_fdr	115	76	170	135	101	132	91	121	99	102
GACACGGCTCCGAATG	alt_2632_fdr	23	8	13	2	6	12	12	5	9	13
TGTAAATAGTTTGCCC	alt_2632_fdr	40	38	44	36	37	30	29	44	34	47
TTTGTTTCGGTATTTG	alt_2632_fdr	8	13	19	9	8	17	15	12	19	16
TTTAGCGTCAGCGCTT	alt_2632_fdr	22	23	32	25	18	21	19	29	22	14
CCCTCGATTAAAGTTT	alt_2632_fdr	188	196	269	218	182	211	178	209	224	173
CGGTATTCACAGTCAT	alt_2632_fdr	73	63	95	85	53	70	78	73	58	61
GTTCTTCTGGCTTACA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTTGAGGAAGCTC	alt_2632_fdr	70	23	76	68	48	58	44	74	54	46
GAACAAACTGATTAGT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
GTGATCTCAGCGTTTA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGGGTTATCGCAC	alt_2632_fdr	19	22	21	30	28	24	28	11	30	15
CCGTATATCTGGGGTG	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TCGATGTATTCAAGGA	alt_2632_fdr	81	74	101	74	70	71	57	97	83	59
CCAAGTTTCCGGTGTA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
CGGTATTGCCTTAGGC	alt_2632_fdr	100	70	141	110	59	107	54	111	73	85
AGGAGGTTACCGGAGT	alt_2632_fdr	1	3	2	1	2	0	0	4	1	0
GACGGTTGCACGGTGA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
AACCTTCATCTAATAC	alt_2632_fdr	63	62	74	69	55	69	72	51	55	61
ATTTGTCGAATATGCT	alt_2632_fdr	70	53	98	73	56	73	56	84	92	88
GTGATCAGCCCAATTT	alt_2632_fdr	30	29	69	35	34	45	41	38	23	37
CGGTGCATCCATGCTC	alt_2632_fdr	10	20	10	12	26	6	21	5	22	7
TCCCGTAGTCGCAGGT	alt_2632_fdr	76	56	89	69	53	78	62	68	67	56
CAATGACTTATACTCT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCCCAAATCATGG	alt_2632_fdr	28	26	41	38	25	26	29	28	26	35
CATATGCTTCTAAATC	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
CGAATAACAATCTGTT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGGTTACCTTAAC	alt_2632_fdr	79	60	102	82	64	69	50	59	60	66
CGGACGGTTAGCTGAA	alt_2632_fdr	19	17	45	39	14	24	9	28	35	28
GAACGTTTTCTTAGGC	alt_2632_fdr	50	65	54	61	33	42	56	40	45	42
GGATGGATCCTCTGAG	alt_2632_fdr	41	33	40	37	27	33	23	31	30	22
CCCGGTTCCATCTTAT	ref_2632_fdr	13	32	9	17	41	8	31	8	30	10
ATAGATTTGATATCTC	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTACCCATCACCA	alt_2632_fdr	10	11	22	21	13	13	11	17	11	14
AGTCCGTACTTGTAGG	alt_2632_fdr	11	10	12	14	9	6	11	8	13	11
AATTTAAATCCCCGGT	alt_2632_fdr	27	9	23	21	15	23	15	17	17	17
ATCAACCGACAGATAC	alt_2632_fdr	33	20	50	30	25	31	21	29	24	29
ATATTAGGGCCCTGAC	alt_2632_fdr	41	37	36	28	26	25	26	32	25	45
ATCATACATGTTACAA	alt_2632_fdr	115	105	169	132	121	109	126	132	128	119
AATCGGTGATTCTCTG	alt_2632_fdr	32	21	43	37	17	42	36	45	27	39
CCGGATAACTGCATTT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTCCCGGCTGTGG	alt_2632_fdr	13	16	20	14	8	20	12	17	9	18
TCCCACTACTACCCAA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTTTCGCTTCGTC	alt_2632_fdr	28	17	29	38	21	28	25	29	24	20
GGTCTACGGTTATTCC	alt_2632_fdr	80	63	85	82	84	92	88	63	83	64
TGAGCTTCATACTGGA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGCCGTAGGCGTG	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TGATAGAGACCGCTTA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
CAGAAAAGCTTAATCT	alt_2632_fdr	58	43	58	42	35	54	65	42	45	51
ATAGCCTTGGATAGGG	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TAATCGGTTATCGTTC	alt_2632_fdr	11	4	18	12	10	7	5	19	8	7
CGGGCAGTCCTCTCCT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGACGACGTTTAG	alt_2632_fdr	12	8	14	11	11	17	6	7	8	10
TTGCCACGAGGCTAAG	alt_2632_fdr	47	40	62	58	38	39	27	45	45	47
GGCCTCTATGTTGTTT	alt_2632_fdr	16	13	20	16	11	21	13	9	13	15
TGTATGATCCGTACCT	alt_2632_fdr	39	40	42	38	26	50	59	37	35	39
TCAAGGGGAGTTACCG	alt_2632_fdr	88	71	99	90	60	66	58	62	71	65
ACGCTGGATCATAGTT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCTATGGGCGTAT	alt_2632_fdr	24	24	26	32	22	30	21	25	25	17
CTCCTATAGATAGAGG	alt_2632_fdr	24	74	24	34	63	30	62	29	68	17
TACGGGAGATTGCGGG	alt_2632_fdr	38	34	71	48	27	34	19	34	32	35
TGGTCCCTTATATTCG	alt_2632_fdr	78	77	96	78	86	86	79	73	94	76
TTAATTAGGGAGGGAT	alt_2632_fdr	31	13	34	26	18	32	17	35	20	21
TTGTGGTTGCGAAGGC	alt_2632_fdr	82	89	89	91	69	84	67	108	88	81
AGTGTTCTCAGCCACA	alt_2632_fdr	16	15	14	16	15	12	7	10	13	17
GGCGATGGAATGTCAT	alt_2632_fdr	123	90	145	114	87	101	78	88	91	105
ACGAGTTGTGGCTTTG	alt_2632_fdr	41	35	63	62	38	47	38	38	41	58
TACGTTTTTTTGAGTC	alt_2632_fdr	7	4	6	7	6	4	10	5	2	5
CTCATCGCTTTGCGAT	alt_2632_fdr	10	8	14	9	10	9	10	12	8	9
TTAAGCTTGTATACAA	alt_2632_fdr	9	13	14	12	1	10	12	6	8	5
TACTCATTGCGACCCC	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
GACGCCTGGTAGCTAA	alt_2632_fdr	14	4	12	9	10	12	6	10	6	13
CATAGTGTACAGCACT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
CATCGAGATCACGACT	alt_2632_fdr	35	17	40	39	11	28	22	21	26	13
TCAATGTATTTGCCCC	alt_2632_fdr	82	58	104	88	60	65	73	74	49	61
GGAAGCCAGGATAGTC	alt_2632_fdr	11	4	20	6	8	12	6	20	19	7
AGGATAAATTGGCGGG	alt_2632_fdr	11	8	18	23	13	16	14	14	8	12
GAGCATCTCCAACGCC	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
CTTATCGAGCTCTACG	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TGATACTTTGTCACGT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
AACCTCACTTTAGCCA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
AGAGTTATCTGACGGC	alt_2632_fdr	60	35	56	45	42	50	36	50	40	46
CGCGGAAATCAGATGG	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTCGCCTTGGGAT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TAAATAAGCTTGCCAT	alt_2632_fdr	53	22	68	59	48	54	41	50	53	42
ATTCTGACTGCCACTT	alt_2632_fdr	16	9	14	17	12	17	18	15	14	15
ATAAATTTCTTACAGT	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTCCGAACGAATC	alt_2632_fdr	36	18	30	26	34	27	26	29	36	42
TGTGCAGATCTTGCAC	alt_2632_fdr	33	23	36	38	28	39	34	37	30	38
GACCGCCAGTTCCGAC	alt_2632_fdr	13	11	4	9	12	9	5	10	8	7
GATCATAATGGCGTAG	alt_2632_fdr	29	21	45	30	20	33	28	44	14	27
TTTTCTTATAAGCGAG	alt_2632_fdr	26	7	12	12	17	23	18	18	19	18
TCACTTGGCTAGTCCG	alt_2632_fdr	42	31	33	29	21	29	30	41	33	28
GCTGTATAGAAGCCTT	alt_2632_fdr	129	95	169	120	92	120	101	117	94	116
ATTTAGCGCAATCCTG	alt_2632_fdr	38	28	73	57	34	57	28	45	33	37
TATATTCTGGAACAAT	alt_2632_fdr	7	6	3	2	4	3	5	5	7	3
GGGTTTCAAAAACAGA	alt_2632_fdr	0	0	0	0	0	0	0	0	0	0
TTTCATCTTAGCGAAA	alt_2632_fdr	42	26	33	49	32	32	31	25	36	22
TCATATGTGTCTGTCA	alt_2632_fdr	151	121	165	195	134	164	116	156	162	169
CAGGGGTATGGTTTCC	alt_3968_reverse	35	51	47	49	49	59	26	42	56	27
ATTTTCGCGCCTAGTA	alt_3968_reverse	18	23	20	19	15	11	15	12	22	18
ACATCCGCTTAACGCT	alt_3968_reverse	30	18	26	16	14	24	15	20	36	23
CGTGATCATAGCCGTG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TATCTGGAGTATGCTC	alt_3968_reverse	34	24	34	27	36	30	28	34	30	33
TGGACTGGTGTATCAT	alt_3968_reverse	63	60	65	63	51	48	71	55	77	49
CATTGCTGAAGCGTGG	alt_3968_reverse	17	24	19	27	41	19	29	22	34	20
ACAAATTCCGTCTTTT	alt_3968_reverse	0	0	0	1	0	0	0	1	0	0
CCGGGGCTTTTTAAGC	alt_3968_reverse	21	36	25	25	31	19	55	25	29	27
TGTCGGGAGGTTCGTT	alt_3968_reverse	128	94	128	100	117	116	109	119	113	89
GCTCGGCAACTGGGTT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCTGAGCCTCCCG	alt_3968_reverse	20	23	25	26	23	17	28	21	24	23
GCATAAGGTTACTCCA	alt_3968_reverse	10	10	8	10	3	4	4	9	10	5
ACGGAATACTTGTTGC	alt_3968_reverse	3	7	3	2	14	4	11	7	9	0
TGGTGATATGGTAGTT	alt_3968_reverse	26	36	37	32	34	18	40	24	33	28
GCAACAGGTTCCGCCC	ref_3968_reverse	79	100	133	109	98	105	115	89	128	81
GCCCACGTTTCCGGTG	alt_3968_reverse	39	41	29	35	51	15	44	37	46	18
GAAATTTCTACGAAAT	alt_3968_reverse	120	137	121	102	114	89	139	111	146	87
GTAGTTTTCCCCTTCT	alt_3968_reverse	14	17	18	11	22	15	26	9	20	16
GATACTCTCGGCCTCG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCAACGGATGAGG	alt_3968_reverse	39	34	47	30	37	51	34	33	47	22
CATAACCAGTAGTCCA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CGACACTCGTGCCTAC	alt_3968_reverse	1	21	5	2	12	4	15	2	15	1
AATCGCCAGTTGGGCC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCAGCTTCTTGTG	alt_3968_reverse	118	133	183	172	135	157	147	142	185	119
TGCCAACGTCTAGCGC	alt_3968_reverse	10	20	16	12	13	5	16	9	17	12
CCATTGAACCGGGCGA	alt_3968_reverse	3	19	12	17	11	16	6	11	18	12
AAGTTGTACCAGCCTC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCAGCTAGCGCAC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CATAGGGAGCGTTGAT	alt_3968_reverse	22	11	18	13	7	13	15	13	9	12
CGAGTGAGCATAATTC	alt_3968_reverse	9	15	19	12	10	15	15	20	13	9
TGGATGAAACGTCTCC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTTTAGCAGGTCC	alt_3968_reverse	8	6	8	4	5	9	15	8	8	8
CGTGTTCTGAGTCTCG	alt_3968_reverse	3	6	3	0	5	5	13	4	9	5
ACATAATGTAACGGTG	alt_3968_reverse	15	8	21	19	10	9	23	25	19	20
TATTTGTGTTTCTCCA	alt_3968_reverse	25	32	36	19	43	27	42	44	32	38
AATCTATACTGGATCA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACAATGCTCATTTTTC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCTTGTTAAAATG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTATGGATGGGTTTTA	alt_3968_reverse	20	18	20	17	14	20	16	10	19	13
GATAGGGCTGATCTGT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACAAACTCCTGGGCGT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCCGACACGTTTT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGAGCCCAGACC	alt_3968_reverse	5	8	1	3	5	2	4	4	5	7
TCCCGTCAGGCAATTA	alt_3968_reverse	10	23	1	6	20	4	16	9	16	4
GCTCTTGATTTCCGTG	alt_3968_reverse	37	36	48	49	32	37	37	39	38	24
TCTTCCCTATTCCTGT	alt_3968_reverse	6	6	7	10	7	4	6	6	3	3
AGCACCCAGGCGGTCG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTACTTTCGGTCG	alt_3968_reverse	7	12	7	5	12	6	4	6	10	3
TTTGTAGTCCTGTAGA	alt_3968_reverse	4	3	1	1	1	5	2	1	4	0
TGTTTTAAAGAAGCCG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTATATTAGTTTCTG	alt_3968_reverse	13	7	16	15	8	7	17	7	19	14
TTCCTCTGTGACCAAC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CCAAGAAGAACGTCAG	alt_3968_reverse	16	27	18	23	31	25	31	20	33	14
CGGATCATCGAGCACC	alt_3968_reverse	111	102	129	112	99	110	125	114	134	91
CGTATGAATATCGAGA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GATGCGTTTACTTTGC	alt_3968_reverse	20	33	21	22	16	28	21	29	32	13
TGGTCTTGAGTCGCTC	alt_3968_reverse	59	51	50	65	35	39	54	42	51	54
ATACGCTAATTTTTAA	alt_3968_reverse	51	31	51	47	43	35	47	40	58	46
AGATGTGTTAATGTTC	alt_3968_reverse	107	46	149	104	56	82	38	86	66	77
GGTGTGACGCCATAGG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGGATGCCCCGCTCTT	alt_3968_reverse	34	48	61	40	39	40	53	42	69	31
GGTATGACGCCATAGG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TACGGCAAAGGCCAGG	alt_3968_reverse	25	40	42	34	28	49	30	26	45	21
TCCATGTCGCGAATCC	alt_3968_reverse	67	80	123	80	74	70	73	87	66	59
ACATAAACCTTTTCAT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCGACATGTCGCT	alt_3968_reverse	1	0	0	0	1	1	3	4	3	0
ACTACAGTTGAAATCT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GCATATATTACGCTCT	alt_3968_reverse	57	66	71	49	42	55	78	45	77	69
GGACACCCCCTGCGCC	alt_3968_reverse	27	56	24	24	25	27	62	20	51	12
TATCAGTCCAGGTAGA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTCAATATTCAAA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTCACGATATTAC	alt_3968_reverse	29	37	28	31	34	28	40	31	31	25
AACCACACGATATCAC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GACATTCCTCGTTTAT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GCATGGGTCTTCCATA	alt_3968_reverse	3	20	6	4	11	4	16	7	17	8
GAGCGCGAAAACCTCT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCAGAGGACATT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTTAAGTTAGTTC	alt_3968_reverse	66	109	74	66	95	82	100	77	95	66
GTAAGTGGAGACTTGG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCCTCTTACTGGA	alt_3968_reverse	0	0	0	0	0	0	3	0	0	0
GCTTCGATTGCCATAA	alt_3968_reverse	14	18	13	14	16	15	14	13	18	13
CCCTGTTTGCTGGTGA	alt_3968_reverse	53	75	68	53	65	75	72	62	69	45
AGATGGTGGCTTTACC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGATATGCACGCCGGT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ATACGGTGTTCCGTCA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TGCACCGTTCAGTGAC	alt_3968_reverse	81	73	73	74	81	66	101	59	87	63
CGGTGCCTGACTATGT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCGGTTAGGATCA	alt_3968_reverse	28	21	31	31	22	16	21	26	16	24
GTGCGTCCGCTGTCTA	alt_3968_reverse	87	98	109	108	109	76	115	76	108	80
ATGAATCCTCTGAGAT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
AATGGCGGCCTTAGCC	alt_3968_reverse	93	104	116	111	116	111	106	100	94	92
CGGTTCTAAGGTCGGC	alt_3968_reverse	1	1	12	6	2	8	3	3	8	4
ATTCACTTGAATTCTA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGGCTCACTCTAG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TCATGAGCTGCAGTTC	alt_3968_reverse	42	38	33	40	39	39	32	31	40	28
AGGACTGTACCTGCAC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTCCCCTCTTCGG	alt_3968_reverse	20	17	19	15	14	19	19	15	27	14
GGTCCACACCCTGTCA	alt_3968_reverse	16	9	19	17	19	13	14	12	15	13
ATCTACTCCGGTTTAC	alt_3968_reverse	43	57	44	33	51	51	54	42	69	29
AGGACTCTTTCTCGGG	alt_3968_reverse	61	49	79	79	65	68	66	59	93	78
GGTCCAATCTTTTGTC	alt_3968_reverse	33	46	32	35	38	34	54	28	39	39
TATTGGCGACATAGTG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TGCCTCCGTTGAGCGG	alt_3968_reverse	19	20	24	12	24	20	16	23	14	15
CGGTTCTAAGGTCAGC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTTTATTTTGGG	alt_3968_reverse	46	48	45	48	28	42	49	46	49	38
ACGCAACTTCTGTCCA	alt_3968_reverse	8	10	13	10	11	7	8	10	12	9
TTATCCGGTTGTGTGT	alt_3968_reverse	7	16	12	10	11	7	11	11	11	7
TATTTTAGAATCCGTG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGTCTCAATGTGA	alt_3968_reverse	7	10	10	3	8	6	5	8	9	6
CGCCAATCATGTTCTT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTTATCCTCTCTACGC	alt_3968_reverse	8	10	10	4	8	7	6	4	9	12
CAACCTTACTATTGTC	alt_3968_reverse	0	3	3	1	3	1	0	5	0	2
TAGTGTCGACGTAAAC	alt_3968_reverse	14	13	13	7	19	18	21	14	11	8
TTTCACCGTGCATTGT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACAAACTTGTTAGTGG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTATTGCTGTCTTTCT	alt_3968_reverse	14	12	18	12	14	17	9	13	11	9
AGAATGTTGTCGCATG	alt_3968_reverse	103	122	98	77	107	109	134	85	106	91
TACGGGCCGTCTGTTT	alt_3968_reverse	10	21	14	6	22	7	22	5	21	10
TTTACATTCTTCCCAA	alt_3968_reverse	11	2	5	1	0	7	5	3	5	5
AGGTCATACCCCTCCA	alt_3968_reverse	54	57	81	60	61	60	78	60	70	51
ACTCGGCAGGATAAAA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAATTAACACATT	alt_3968_reverse	62	42	79	59	42	53	60	71	64	57
TTAGCTTTTGATACCT	alt_3968_reverse	28	43	31	44	35	28	42	32	38	29
GATAATCGTATCCGAA	alt_3968_reverse	32	25	33	19	20	27	26	24	28	25
ATTTCATGGGCCCCAT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CCCGACCAAGTCGGTG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CACTTTTTTTTTGTTG	ref_3968_reverse	457	450	505	466	492	398	492	456	495	408
TGGATATTTCTATAGG	alt_3968_reverse	118	119	143	99	122	113	108	101	126	90
GGTTGCTGCAAGAGTG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTATATTTCCTTAGTT	alt_3968_reverse	53	43	71	43	47	57	57	38	56	47
ATTTCGGCTCCCCCCA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTCACTGTGAATGTGG	alt_3968_reverse	79	98	98	72	85	77	82	68	89	66
TCTGTATTAAAACCGC	alt_3968_reverse	5	7	6	5	7	5	10	3	7	6
TCCCAGTTTAAGGTGC	alt_3968_reverse	18	41	13	16	52	11	44	11	55	11
ACCTTACACGGAATCC	alt_3968_reverse	79	88	86	88	92	72	63	79	80	57
TCCGAGCTAGTTTTTT	alt_3968_reverse	5	8	11	3	6	4	10	8	7	4
ATGTCCGGACTTCCTC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TGATTCCAGCTACCGA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCCCGGTTTCGCC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TAGCACTATGTAATAT	alt_3968_reverse	3	2	3	3	2	1	6	3	4	0
AAAGTCTGATTTGGGT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TATCGGCTGACGGTCA	ref_3968_reverse	62	49	69	74	41	47	50	55	58	48
CTGCCGTTGTCAGGCT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCCTATCTACCTT	alt_3968_reverse	6	7	16	9	9	6	9	4	7	9
TAAAGAGCACTTAGAG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTGTCCTCTACCG	alt_3968_reverse	60	72	69	72	62	40	69	40	77	53
GGGGTGGTCTATCCCT	alt_3968_reverse	18	32	25	24	27	40	20	20	18	23
TGCTTTGGCCACATCC	alt_3968_reverse	15	18	10	9	8	4	9	6	12	10
TACTCACCAATACAAG	alt_3968_reverse	9	16	8	8	15	5	25	5	14	1
GCAGCATGGTTTGTTA	alt_3968_reverse	18	24	32	15	24	11	25	18	18	16
TTGCTATACCTTAACA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAGGTGGCGTTCC	alt_3968_reverse	11	6	10	8	11	7	19	7	10	8
AGGTATGCGATACGTG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CGCGGGTATTCTCGGT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTATGGTGCGATTAAG	alt_3968_reverse	0	3	1	1	3	3	0	1	0	4
AATTCGCTTTATGAGC	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTATTCCCATATCCTC	alt_3968_reverse	15	25	23	29	21	31	15	24	19	21
TTATTCTTCACGGAAA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTTATCTCCAGCT	alt_3968_reverse	17	19	19	20	13	9	14	18	27	19
AGTCACCAAGGAAGCC	alt_3968_reverse	11	11	14	15	10	16	16	11	18	7
CTTCGTCTTTCGCTCT	alt_3968_reverse	3	3	12	3	10	4	5	6	3	2
TTCGTCGGACAGATGG	alt_3968_reverse	9	1	10	2	6	4	3	1	7	8
GTTTGGGTGGTGGGGG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTCTCCGCATGT	alt_3968_reverse	49	76	60	45	60	67	51	69	75	51
CCTATTTATAACTCCA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGACATGTTTCGGGCG	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CGGAACTCTTCCTCAA	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCAGGTCTTATTA	alt_3968_reverse	30	26	33	19	39	20	28	24	40	28
TCACATTGAGCTCTGA	alt_3968_reverse	13	16	21	24	20	22	29	18	24	14
GTTGCTCACGTCTTCG	alt_3968_reverse	12	16	21	16	17	18	11	11	9	16
AGTCGCGCTGGCGATT	alt_3968_reverse	32	46	40	36	38	30	49	34	30	40
GAGCAGCGATCGTCCT	alt_3968_reverse	35	44	45	34	26	33	29	29	38	22
TATGGGTGCTTGAACT	alt_3968_reverse	0	0	0	0	0	0	0	0	0	0
GAACCTTATTGCTTAA	alt_3968_reverse	9	9	5	13	7	5	6	4	8	5
CTCCCATCGAACGTGG	alt_3968_reverse	1	13	2	3	11	4	7	6	6	5
ACTATGTTTAGCCACC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCCATTCGTTGAA	ref_2406_fdr	23	6	24	22	5	19	5	27	6	28
TCCTGACGGACCCTCT	ref_2406_fdr	5	3	2	5	4	4	15	5	12	1
AAAGCGTGTCGCCCGC	ref_2406_fdr	9	0	8	4	2	1	3	7	0	4
ACTTTTTATGGGCAGG	ref_2406_fdr	18	0	32	10	2	15	6	12	8	19
AGTTTTCAGCGACAGG	ref_2406_fdr	36	3	49	38	6	34	6	28	8	45
CTTTCGGTGAACTCCT	ref_2406_fdr	265	54	293	164	54	216	45	202	58	252
AAAAAGACCCTGTTGT	ref_2406_fdr	150	62	136	102	70	152	67	114	66	103
AATCATTATCTAGGGT	ref_2406_fdr	42	6	42	36	6	38	7	33	18	36
CTGAGGCTATAGTGCC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GTTTACGTGTATATGC	ref_2406_fdr	150	34	184	131	34	135	24	140	21	149
ACTACCAGTGTGTTCT	ref_2406_fdr	128	22	148	91	25	115	28	94	19	116
GTGTGCAGTTTTGTAC	ref_2406_fdr	227	36	242	147	32	194	42	180	49	195
TCTTATCCTCCGTTTC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GGAATATTAGTCGATA	ref_2406_fdr	580	97	617	381	112	468	96	467	113	499
ATTGGACCAAATGGGA	ref_2406_fdr	98	15	114	69	23	92	24	80	21	88
TTAGCTTTAGATTGCG	ref_2406_fdr	21	4	39	42	7	35	7	26	7	26
TAGAGGTTACCCCACT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
AGTCAAAATGGGGAGA	ref_2406_fdr	101	31	95	61	33	79	31	72	28	74
ACGGTTGATAGTTCTT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GGCCACTTAGGAGTCC	ref_2406_fdr	108	19	114	65	23	86	18	83	23	111
CGTGTCTTTACCGTTC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GCATACCAAAGGCTGT	ref_2406_fdr	145	34	172	116	32	143	34	175	34	148
TTCTTCAGCACAGTTT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
AGCAATATAAGGACTC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
ACTAGACTGCTTTTGC	ref_2406_fdr	19	5	24	20	4	29	14	20	15	11
AACGCCGCTTGATCTC	ref_2406_fdr	37	10	58	35	8	33	10	38	11	45
TTCTGTTCCCGATGCC	ref_2406_fdr	22	5	31	26	7	21	5	17	5	22
GTTCTAACTCATATTA	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGAGTGGACGAAG	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GGTGATCGAGGGGTCT	ref_2406_fdr	776	145	846	536	124	661	118	526	121	654
TAGTATCTTCAAGTGC	ref_2406_fdr	32	17	55	38	13	37	11	29	24	24
ATTAGTAATAGTTGAG	ref_2406_fdr	41	5	49	25	5	36	4	21	4	26
TCGTTATCCACTTCCT	ref_2406_fdr	182	26	200	134	35	156	32	136	29	157
GAACACTTTCTGCGAT	ref_2406_fdr	73	20	93	73	11	69	15	65	18	79
GACACGCTGTGTTTCC	ref_2406_fdr	172	20	164	104	25	120	30	121	22	147
GCACTGAGTGGCGGAG	ref_2406_fdr	20	4	11	11	3	14	3	12	4	15
GGGCTTCCAGCACGTT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
CTCCACAGCGGTTGCC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GATTCCTACCCTGAAC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GACGCCACTCCGTCGG	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
TCTCATTCGACCGGCC	ref_2406_fdr	70	33	70	48	38	69	34	52	36	60
AAGTTTTCCTTGGCTT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGGCACAGCCCAG	ref_2406_fdr	15	0	11	15	3	10	0	7	3	11
TAATGGCAAATCTACG	ref_2406_fdr	605	135	717	487	116	581	118	470	123	581
GGTGCAGTAGCTGGAG	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GCTAAGGGCTTGGTTC	ref_2406_fdr	97	23	119	85	18	102	16	97	20	103
GACTGCGTCCGTATCC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGGGCCAATTCT	ref_2406_fdr	219	42	267	169	38	211	49	193	61	188
ACTGGGTGTATCATTC	ref_2406_fdr	210	36	223	156	30	207	36	203	41	177
AGAGGGTCACCATATT	ref_2406_fdr	34	6	59	34	9	57	9	40	9	26
ACCGCCCTGCACCAAC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GCGACTTTCCGGGAAA	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
TAACCACATTGTATCC	ref_2406_fdr	270	60	296	215	62	227	52	254	40	243
GGGTATCCTAGATCTT	ref_2406_fdr	118	25	116	68	21	91	21	83	20	99
ACCACTATCTAGAACA	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCACTCTGCGTAA	ref_2406_fdr	260	39	241	175	50	225	61	201	59	206
GCAACGGTTGGTCATT	ref_2406_fdr	90	11	91	63	8	78	18	72	18	73
ACTGTTTGACCGGATT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCCCCATACCTTT	ref_2406_fdr	83	23	118	79	32	91	29	82	24	87
CAGCCATTGGAGTATA	ref_2406_fdr	163	58	230	121	65	167	56	174	55	168
CGCCGACTTGCATTTT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGTTCCTTGTTGT	ref_2406_fdr	491	77	469	362	97	387	106	407	114	455
GTCGGCCTTCGTTCGT	ref_2406_fdr	496	93	595	390	79	426	83	413	80	487
TCATTGAAGAGCCGGC	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTGGTGGGCTGTG	ref_2406_fdr	778	140	967	659	156	769	158	682	173	745
TCCTTATTATACAGTT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGTAAATTTCCGC	ref_2406_fdr	2	0	2	2	1	2	1	1	0	5
ACCCTCGCTGACCATA	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
AACCTTCAGCGTTCAG	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
ATATGCTTCGGATGTG	ref_2406_fdr	46	11	61	50	8	65	8	33	8	51
GTATAGGCCTTGGCAG	ref_2406_fdr	275	48	311	177	39	225	42	208	44	226
GATGAATCCAACTACG	ref_2406_fdr	132	24	158	112	28	136	25	110	35	132
CTGATGGGTACCTAGT	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
CTACGAAACTCTACCC	ref_2406_fdr	105	25	134	108	21	94	23	87	13	71
GACGTCCTCGTCAATC	ref_2406_fdr	93	21	119	63	20	96	18	65	22	101
ATCCTTGTTCGGTGTA	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
AGACCTTAGTGCCATA	ref_2406_fdr	97	12	92	71	23	79	21	76	17	93
GGTTGTCAAAGAGGGC	ref_2406_fdr	93	32	129	70	12	117	16	72	13	105
ATCCGTTTTTCTTTTA	ref_2406_fdr	0	0	0	0	0	0	0	0	0	0
ACCCACTTCTGTTCAT	ref_2406_fdr	141	38	199	134	28	138	34	129	47	122
GTTATGCCCACATGCT	ref_2406_fdr	39	7	46	21	12	43	2	40	5	31
GCAGGGTTTGACTCTC	ref_2406_fdr	127	23	183	135	33	154	30	128	33	112
ATGCGTTGGGCCTTGG	ref_2406_fdr	82	18	101	70	12	71	21	65	23	95
TTATTTTATCCCATTT	ref_2406_fdr	236	60	290	189	63	237	53	204	54	244
CTGCAGAGTTGTGAAT	ref_2406_fdr	178	41	243	161	31	168	35	169	33	220
TTTTTCATGCGCAGAT	ref_2406_fdr	37	3	31	24	6	15	8	13	4	29
GTTTTGAGTTGGACTC	ref_2406_fdr	110	25	157	103	28	112	30	105	29	114
GACTATAGGTCGCTAC	ref_2406_fdr	444	85	454	316	116	440	99	367	105	358
GCTTAGATCGCTCATT	ref_2406_fdr	16	8	14	8	2	16	3	6	0	15
GGTTTAGAATTGATCG	ref_2406_fdr	124	18	133	85	31	116	28	89	29	102
TCGTGAATCAAAATAC	ref_2406_fdr	20	9	26	18	13	27	19	27	19	28
CATCCCCATACTGCCT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGTCCGTAGCCAGTGG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
CCACCCACTGCGTGGG	ref_5651_new	31	42	13	16	52	14	68	14	58	14
GTATGCTAACTGGTAG	ref_5651_new	17	29	15	13	24	16	31	17	37	11
ATGCCATTGTTCCATA	ref_5651_new	66	160	79	71	168	66	140	66	183	74
CTGTTATTTGGTATCT	ref_5651_new	40	95	45	53	64	37	81	46	76	28
TGGTCCATCATCTCAG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GTTATTCCCAGCGTGA	ref_5651_new	8	6	7	7	15	6	11	6	13	9
CGCAATGAAGTTCATC	ref_5651_new	6	12	11	13	18	6	20	6	20	8
TACGTGCATGTACGGC	ref_5651_new	13	20	15	8	19	8	14	8	22	10
ACCACCAAAATTAGAT	ref_5651_new	35	48	33	42	53	20	60	23	58	31
CTAGATAGCTCACCTC	ref_5651_new	0	9	1	4	8	3	3	3	7	4
TATACTTTTCGGTTTT	ref_5651_new	29	23	24	25	35	22	44	16	35	20
ATCTTTTTCGTTGTCC	ref_5651_new	18	17	12	13	20	16	24	13	17	10
TGTACGTATCTAGAAT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GCAATAATTCTCAGAG	ref_5651_new	5	13	8	6	15	10	6	12	9	4
TTTGTAGGGCGACGAA	ref_5651_new	0	0	0	1	1	0	0	1	1	1
TCGCGCTTCCAGACAC	ref_5651_new	2	7	8	7	8	7	10	5	6	5
TGCGTATGTCACATTT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GAGTATCATATGGAGG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
CATATCCTTTGTTGAG	ref_5651_new	115	160	108	101	171	95	155	91	196	91
CGCATGAGTTGTACAC	ref_5651_new	11	20	8	12	26	9	17	12	17	12
AAACTGATACGTCGAA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
ACTACCGGCTATATTG	alt_5651_new	29	39	29	23	36	21	39	17	46	11
CCCTTATGTTTCTTCA	ref_5651_new	183	276	217	191	295	162	319	176	284	144
TACCTGTTGGGTCCAG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGTTCTGAGGAATCTT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GGATCCGATTTGCGGC	ref_5651_new	39	58	63	61	62	37	76	26	65	40
ACGCATCCAGCCATTT	ref_5651_new	15	25	23	27	22	16	19	18	19	11
TTATTTAGGGACGCTG	ref_5651_new	57	77	74	43	74	53	102	40	95	44
TGTGTCATATGTGCGG	ref_5651_new	14	15	6	6	16	14	19	7	32	5
AGCGGAGTTGTCCGAG	ref_5651_new	4	7	5	7	8	2	12	5	5	2
CGAGGGTCTGCACTCA	ref_5651_new	24	33	18	28	31	17	40	11	42	17
TCATCAATCTTCTAAT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GGTTATTGCTGTCGAT	ref_5651_new	20	30	19	21	31	19	35	17	29	25
AGTAACATGAAGAACC	ref_5651_new	8	15	12	2	9	3	10	9	17	9
TGATACCAATACAACA	ref_5651_new	47	60	38	43	43	29	58	37	71	30
CTATTCTGGTATGTGT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GCCCACCATTACTCTA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TTCTCCGAGTTGAGAG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TTCGCTCAAAAGACAA	ref_5651_new	20	35	24	17	39	17	30	15	55	22
CCCAGCGCGTGATCAT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
CTATCTGAATAGTGTA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TCCCATGTAATGTATA	ref_5651_new	21	35	27	29	40	18	49	28	51	17
TGGGCGCTTCTCACGT	ref_5651_new	9	19	16	10	14	7	32	6	21	9
AGATTACATTATTGCG	ref_5651_new	3	5	3	2	3	2	6	3	10	1
TGTTACAGCCTCCTCG	ref_5651_new	11	16	4	10	13	10	12	9	18	6
TTTTTTACCCATCTAT	ref_5651_new	2	14	4	10	11	3	10	4	13	7
CCCCAGTCCTGCCACA	ref_5651_new	47	60	64	62	57	43	69	30	73	43
CACTTACCATTTAGTC	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GGTACCGCCGCCGAGG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
CATCAAGGAGTATCAT	ref_5651_new	19	24	15	8	21	18	21	17	18	8
TTATGTACGGGTAGAC	ref_5651_new	3	2	4	0	5	2	2	6	9	2
AAGTGCTTGCCGTTGG	ref_5651_new	0	12	3	7	7	3	13	3	9	7
CTTAACTCTATTGAAC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TTTGACGTTCTGGCCT	ref_5651_new	17	35	18	15	23	19	28	12	29	10
CCCTTAAGTTTCTTCA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGCGGAGTTTTTGCAG	ref_5651_new	11	29	10	21	34	13	28	20	40	22
TCCAGTTGTTCAATGG	ref_5651_new	47	64	65	45	82	44	70	38	91	46
GGCTAAGGAATCCTCT	ref_5651_new	75	102	80	65	128	70	113	68	119	52
CATGCATTGTGTATTC	ref_5651_new	0	2	1	3	7	6	9	4	5	0
GTCACCGGTTGTTTCT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGAAGGATCGTCTTTT	ref_5651_new	17	31	32	13	35	21	22	19	29	15
TGTCATCAGTTCCTCA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TTACAATACTGGCTGG	ref_5651_new	12	21	25	16	11	8	24	13	23	11
TGATTAGTTAGCATTG	ref_5651_new	29	49	27	25	39	22	34	29	50	20
GTGCTGAGTTAATGTG	ref_5651_new	10	16	9	12	9	6	4	5	14	10
CTTTAAACCTTACCAC	ref_5651_new	8	16	16	1	18	10	24	5	15	9
TCATTCATTGGCTTTT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TAGTGTTCATCGGCCG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TTGCCATACTTGGTAA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
GTAGTTGCTCTCTATC	ref_5651_new	4	4	6	10	13	5	10	8	6	3
TGCGAGTTAGGGGCTA	ref_5651_new	8	13	6	7	8	5	12	10	8	5
ACCAGCGGTTTAATTT	ref_5651_new	0	4	2	4	5	5	6	2	4	1
CAGGTGGTTTTCTGAC	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGTCGGTGTGGCCGGC	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGAGTCTCTTAACTTA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
ATGTGAGAGTAAATAG	ref_5651_new	0	0	0	0	0	0	0	0	0	0
CGCGTTGACAGGTCCA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TCTCACTCACCTAACC	ref_5651_new	0	6	2	2	4	2	5	0	6	4
ATACTGATACGTCGAA	ref_5651_new	57	110	77	45	106	47	95	44	94	46
GGATTTATGAGGGTCA	ref_5651_new	24	25	36	17	39	16	30	13	44	16
GGAATCTCATTTTTAA	ref_5651_new	17	46	32	18	34	17	41	21	38	13
TATGCGGAGACTCGGC	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGCTGATAGTTTTTCG	ref_5651_new	73	96	90	57	110	72	129	66	118	56
AGGTGTCCGTGGCCCG	ref_5651_new	11	6	4	3	8	2	6	7	7	7
TCACTATTTTTAGTAC	ref_5651_new	9	18	7	14	12	10	18	4	8	7
CAACCGGGTGTCTAGA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
AGTAGATGTCCCTCCA	ref_5651_new	7	27	10	8	11	10	18	8	11	9
CCAATCTTTTTTAGCA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TATGGATTTGTGTGGG	ref_5651_new	60	88	68	70	111	52	125	47	106	50
AACAAGTGGGAAACGG	ref_5651_new	67	78	68	55	90	59	75	41	87	40
TTCGCTCCATGAGCGG	ref_5651_new	24	19	17	26	28	16	29	14	24	14
TCCCTGGGACCCGGCA	ref_5651_new	63	122	109	80	115	84	117	75	119	61
TCCCTGGGCCCCGGCA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TGAGAGTCAATGGTTT	ref_5651_new	18	41	27	13	30	21	44	15	33	16
TCCTCTAGTTACGCAC	ref_5651_new	5	11	8	8	6	4	6	5	12	1
CGGTTGGCCTAACTTT	ref_5651_new	6	7	5	0	6	2	4	1	8	2
TCGCTGTTGCCATGAT	ref_5651_new	26	35	21	28	26	19	34	20	38	26
ATATGTGCCAATTGAA	ref_5651_new	5	10	9	7	14	3	17	6	14	9
TGTTCTCTGGACCAAA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
ACTAGACTGCTCCTAT	ref_5651_new	13	28	20	21	40	20	55	19	51	20
TACAATTTGTATTGGC	ref_5651_new	10	14	14	8	12	11	17	7	11	6
TCAAATTGCAATAGAG	ref_5651_new	14	23	18	22	26	12	31	17	38	19
GTGGGTCTTACAGTCG	ref_5651_new	51	83	72	45	86	52	80	42	92	49
TGGATAGTATAAATTA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TATAACCTGTTCCAAT	alt_5651_new	23	38	36	42	53	39	54	30	58	25
CTCTTTCAATTGCGGC	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TCATCGGTTGCGGTAC	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TTCCAAGTTTACCTTT	ref_5651_new	0	0	0	0	0	0	0	0	0	0
CGGTCTTGCATGTACA	ref_5651_new	0	0	0	0	0	0	0	0	0	0
TTGTTCACAGGCTCTC	ref_5651_new	50	76	73	47	72	66	101	43	89	44
TGCGGTAACCGTGGCC	ref_5322_fdr	20	13	36	16	16	18	26	19	22	18
ATCTATAAGGTTTTTG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCTATCCCTAGAA	ref_5322_fdr	40	37	30	33	21	23	34	26	27	31
CAGCTAAGCGTGCGAT	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGGGCTAGGGTAC	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGTCGCCTCTCCA	ref_5322_fdr	57	50	56	63	41	67	44	59	50	50
TGTTTACTCAATTATT	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAGCTTTTCCGAT	ref_5322_fdr	65	68	94	73	56	67	44	76	80	69
CTGTGTTCCGCGTACG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGTTTATCTAACT	ref_5322_fdr	2	2	4	0	2	4	1	8	3	0
CAATCCGCGGTCGGGC	ref_5322_fdr	145	170	173	159	162	165	189	151	208	156
AGCCGCCCGACGTGTT	ref_5322_fdr	17	24	27	29	24	16	23	26	25	19
AGTCTTCAAGGCCCGA	ref_5322_fdr	0	1	0	0	0	0	0	0	0	0
TGCCGCATACCAGGTG	ref_5322_fdr	170	165	262	254	201	219	213	177	227	181
TTGTCGTGATGCCGGC	ref_5322_fdr	89	41	94	112	64	74	50	78	43	60
AATTATTCGTCACCTC	ref_5322_fdr	33	28	36	34	20	30	15	34	27	26
CAGGGCGCAATTTCTT	ref_5322_fdr	102	90	155	98	81	106	72	109	96	87
ACCGTATACAACCGGG	ref_5322_fdr	50	35	43	42	59	47	40	49	34	44
GTTGTAACATTTTCAG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCCATCTCCTTTG	ref_5322_fdr	46	32	57	49	29	44	28	45	37	37
CCTCTTTTAGCATTCT	ref_5322_fdr	40	16	38	40	26	35	23	27	27	25
TTACCGACAGGACCCA	ref_5322_fdr	102	79	145	118	89	127	88	114	87	101
CAGGACCCGACGCTTT	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
ACATTAGTTTGCGGTT	ref_5322_fdr	24	9	30	35	22	29	21	17	30	23
AGCTGTAGTTGGCTCC	ref_5322_fdr	4	5	4	6	7	7	10	6	3	4
CTCCTCTCGTCCGCGC	ref_5322_fdr	8	29	21	17	41	11	25	12	31	8
CGATACTGATTATAGG	ref_5322_fdr	12	6	8	13	7	5	7	13	7	8
TTCGTTGGGGAGCTGG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTGTGGCCTTCT	ref_5322_fdr	42	28	48	55	25	38	38	46	39	24
TATCCCTCCAGCTCTG	ref_5322_fdr	39	34	43	31	31	27	46	38	35	50
AGTCTATTTCAGTACT	ref_5322_fdr	77	71	88	84	62	74	77	65	69	73
GGTAATCTCGAGATTG	ref_5322_fdr	16	5	22	24	12	15	13	21	8	20
ATGTAGTCATTCCATC	ref_5322_fdr	29	25	40	39	20	34	17	34	28	28
CCGCTGGCTGCCTACC	ref_5322_fdr	20	15	18	22	27	19	20	13	19	19
ACATAAGTCACGAGCA	ref_5322_fdr	1	0	0	0	0	0	0	0	0	0
ACACACTTTTAGGGCG	ref_5322_fdr	19	15	22	19	9	13	12	19	10	17
TCAGGAATGCCTGATA	ref_5322_fdr	93	71	108	106	63	76	64	90	72	73
GCAATTACAGTTCCGT	ref_5322_fdr	17	7	24	12	10	21	17	26	12	14
CTTTGACTTGTCAATT	ref_5322_fdr	19	5	23	12	13	11	8	18	11	19
TAAGCACTATAGTTTC	ref_5322_fdr	161	100	159	118	107	144	123	128	114	120
TCCTTCTCCATGGGTC	ref_5322_fdr	16	13	28	37	17	21	25	22	30	21
TTAGGGCTGCTGTAGG	ref_5322_fdr	13	1	6	10	6	6	1	7	0	6
CCGCAGGTTTTTGTTG	ref_5322_fdr	24	21	40	25	21	23	23	25	31	32
GCACGGTCCCAGAGGA	ref_5322_fdr	57	44	104	70	49	63	42	84	52	81
GCTCAAAGGTTTCGGA	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGTCCCGGATGTT	ref_5322_fdr	79	53	103	80	62	66	67	71	58	82
CGACTTAGCTGCCCGT	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
CAGGATACCCGCCGTA	ref_5322_fdr	39	25	43	38	18	35	30	49	25	28
CCTGTCACATGACTTT	ref_5322_fdr	23	27	28	31	30	29	18	21	29	21
CACCTTGGACAAGTAT	ref_5322_fdr	51	30	57	38	44	32	33	45	33	32
ATTCAGTGTCAATGAC	ref_5322_fdr	25	15	30	20	24	21	14	18	13	17
GAAATAGCGGCAGCAG	alt_5322_fdr	109	76	128	94	78	92	83	86	96	90
CCCCGGACAGACTGAA	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
CGGCGGCTATCTTTAG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
TCCACTGGTACCGATG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GGCACATACACGCGGA	ref_5322_fdr	28	14	26	28	19	40	18	31	25	20
CGTTGCCAACGTTGTT	ref_5322_fdr	1	12	6	3	18	4	8	2	12	0
AGGAGTGATCTGCGGT	ref_5322_fdr	20	11	17	28	9	21	19	20	23	14
GTCCACCCTTGTATAT	ref_5322_fdr	5	2	6	1	5	8	0	6	4	2
GCATAAAAAATCGGGC	ref_5322_fdr	247	175	347	282	163	237	173	261	227	240
TCTTCTTTTCGGCTCT	ref_5322_fdr	65	29	61	53	20	43	36	46	20	47
TAAACCTCGCCTTAGT	ref_5322_fdr	100	85	112	99	74	98	82	75	73	87
AATATCAAGTTGACCG	ref_5322_fdr	103	58	123	83	64	93	83	82	72	88
TCATTTCACGCTGTAA	ref_5322_fdr	69	43	67	62	54	74	49	67	44	59
CGGTGTCACCGCCAGA	ref_5322_fdr	96	50	103	88	73	97	64	93	74	93
CCGGAGCAACGTTTCC	ref_5322_fdr	22	24	22	29	20	33	33	24	25	25
AATTGCTTGACGTGAA	ref_5322_fdr	66	48	84	55	60	80	63	48	48	64
CGCTTTTTTGCTTTGC	ref_5322_fdr	13	5	11	9	3	14	4	6	5	10
TCCTCGGCACAAGGCC	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTTTCACTCCTTG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
AGGTAACCAGCACCTT	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GTGCGTTTTCGAGGCC	ref_5322_fdr	2	5	5	2	6	4	4	2	0	7
TCGGGTCGGAGTAGGC	ref_5322_fdr	68	47	78	54	38	52	47	57	42	66
ACCATCTACAGAGGGG	ref_5322_fdr	36	27	46	35	17	22	29	19	24	29
CCGTGGTGTAGTAATG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCCGAATTGTTTT	ref_5322_fdr	45	43	56	61	39	50	56	51	54	33
TAGTCCGCATTGATCG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
ATCCGCGGCGTGGAAG	ref_5322_fdr	34	24	42	31	30	34	28	20	29	32
CGTCTTGTCTATAACT	ref_5322_fdr	19	13	22	24	15	16	30	22	31	18
TTTGCCAATCGGATTG	ref_5322_fdr	54	62	85	85	66	85	78	70	55	59
GTATAATGACGGCATA	ref_5322_fdr	120	66	167	154	61	112	69	123	77	98
GACCACATATCCAAAG	ref_5322_fdr	29	10	18	22	15	13	12	25	16	16
TGGCGCGCAACCGTTC	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
TCTAGCTATACCTCTG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGGGGACACTTAG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCATGTTGCTTTA	ref_5322_fdr	32	26	40	44	32	37	31	42	22	22
GACTATCATGTTTCCG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTTTATTCGTCA	ref_5322_fdr	89	58	78	81	69	88	42	86	71	77
TTTGAGTCCGACTGGT	ref_5322_fdr	28	42	47	31	41	41	37	38	47	42
GATTCTTTGTACTCTA	ref_5322_fdr	17	22	16	15	18	7	15	18	16	14
CCATAAAAAGGCGGGA	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GCTTGCTATCTTAGTG	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
TAGAAGCGGATGCGCG	ref_5322_fdr	51	35	51	39	27	39	35	37	47	40
ATCCCTGCAGGCACAT	ref_5322_fdr	0	0	0	0	0	0	0	0	0	0
GCACTACTGTGTTCGG	ref_5083_reverse	21	5	27	27	7	12	11	16	6	14
TTCTAGTCATTAATAT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTAGTCCAGCCTG	ref_5083_reverse	108	24	103	103	43	80	37	109	43	100
CAGTGCTCTCTCCGTC	ref_5083_reverse	24	27	31	23	15	28	23	36	20	26
TTATATCACAGGCTAT	ref_5083_reverse	19	23	23	12	29	8	40	18	39	21
AAGTCCATGGCTTGGC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCCATGAACTTATGGC	ref_5083_reverse	132	53	177	147	44	118	39	141	57	109
CAAGGTCAATCGCCTG	ref_5083_reverse	10	3	5	5	3	6	4	7	2	6
ACAAAGACTCAGAGTC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTCCTCTCGAAAG	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTTATGTTGGACG	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TACCTCGATTAGGGGC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
AGATAGGGTCGACAGA	ref_5083_reverse	384	121	453	405	131	339	129	340	111	327
TTCCCTAGCACATTTT	ref_5083_reverse	54	18	57	39	6	36	14	43	12	34
TCTTTCCAAAGTCTGA	ref_5083_reverse	72	24	80	80	33	77	32	57	26	52
ACGTTTGGCCCGTTAT	ref_5083_reverse	189	61	225	218	61	218	70	208	74	169
ACATCGCACATGCTGG	ref_5083_reverse	153	48	188	190	53	147	61	137	50	146
CGGTGTATTGCTTTGG	ref_5083_reverse	86	36	101	96	31	88	31	81	45	85
TGGGTCAAACGTGAGG	ref_5083_reverse	115	32	125	108	34	84	48	108	49	89
GTAGAGAGGGCCTCAT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTATAGCTGCACA	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTGAGATTTTGCG	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTTGCTTCTCAAA	ref_5083_reverse	32	11	47	33	11	27	12	35	8	27
GCTCACTTTACCCTGG	ref_5083_reverse	113	76	145	132	59	108	68	136	62	93
TTGTGTGCTTTATAAC	ref_5083_reverse	7	5	9	7	3	7	3	7	2	6
CTATCGACGCATCATG	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGGCGGTTCCTTT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTTACCGCTCCCT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCACCTAATTTAAAGA	ref_5083_reverse	540	195	693	556	190	501	221	508	178	484
CTTACACGCCATACGC	ref_5083_reverse	89	30	104	78	28	72	38	82	35	81
TTTCGGAACTGACCGG	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCGAAGAGAGACA	ref_5083_reverse	44	15	58	55	11	38	15	33	16	33
TTAGGTCGGTCGTATC	ref_5083_reverse	73	29	99	64	23	68	41	74	29	60
ACCGTTCCCCCTTGCC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTTGGCTCTTCCA	ref_5083_reverse	114	30	131	103	24	109	30	105	34	103
CCTGCGACGGGAGATA	ref_5083_reverse	164	46	191	200	61	158	72	168	72	172
GGCCTTTGCTGTAGTT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGACGCATACTAG	ref_5083_reverse	52	9	60	58	19	26	9	41	19	36
ACCCATCGGGGCTACC	ref_5083_reverse	349	115	461	364	128	343	119	366	136	345
CACACGTGTGTGTTTC	ref_5083_reverse	468	168	553	532	193	483	196	449	204	421
AACGCAAACGTGGACG	ref_5083_reverse	77	17	115	69	21	73	32	74	30	56
TTCACCATGTTATTTA	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTTGTTATCGATT	ref_5083_reverse	46	20	69	50	20	61	21	53	23	36
CGTCCCCCGCGCTGTC	ref_5083_reverse	308	89	329	336	96	286	117	278	119	268
TAATTGTGTTACGCTG	ref_5083_reverse	222	77	292	204	74	209	95	182	96	222
AAGGCTCTGAATAACG	ref_5083_reverse	35	10	44	23	17	20	6	42	20	36
CGCATTACTTGTGAAC	ref_5083_reverse	0	0	1	2	0	0	1	0	0	0
GTGTAGACAACTCATT	ref_5083_reverse	54	18	46	50	16	37	13	46	13	36
ACAATGGCTTCGTTTG	ref_5083_reverse	100	26	114	109	35	99	27	72	41	87
ACCCGAGGTCAATGGT	ref_5083_reverse	33	23	52	36	13	39	8	33	5	35
CCCCTGCTTGTTATTT	ref_5083_reverse	111	47	151	121	43	123	41	108	45	101
TACTGTTAAGTACGTT	alt_5083_reverse	218	65	235	208	66	201	90	119	68	174
CGATATTGTTAGGGCT	ref_5083_reverse	63	21	82	70	20	96	31	63	25	52
TTCCTTTGTTCCCTTA	ref_5083_reverse	34	16	37	30	13	43	6	43	18	39
CCGCTACCCCGATCAC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCGCTAGCACAAT	ref_5083_reverse	38	40	33	43	32	26	26	27	44	27
TCATTCTGCGTATTTC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CTCCCAGATTCTTTAT	ref_5083_reverse	236	79	251	242	81	177	98	183	100	169
TTATAGTGGGTGTTTG	ref_5083_reverse	17	12	21	25	11	30	5	26	13	18
GTGCATTTGACGGGAC	ref_5083_reverse	8	4	15	20	11	4	5	14	11	16
CGCCACATACTAGGGT	ref_5083_reverse	31	18	51	22	30	34	23	25	19	25
ACCAAAGGCACCAGTG	ref_5083_reverse	46	23	67	39	35	53	28	50	35	48
TGACGACCGAGGTTCC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CACCAACCTTCTAGAC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGAATCGCGGCGA	ref_5083_reverse	236	88	314	271	70	242	107	255	92	250
GCAAGTTTGTACCCGC	ref_5083_reverse	45	16	44	34	11	33	11	34	14	40
TTTTCTGATACTGCGG	ref_5083_reverse	35	15	37	47	12	27	17	32	13	25
TTTGATTTCCTCTCGA	ref_5083_reverse	105	43	132	124	50	102	41	118	42	95
CATGTGTCGGACGTGA	ref_5083_reverse	3	1	4	5	5	4	0	9	2	3
CCCACAGCGCGCTCTA	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
ACGCAGGCGCGCTCTC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CGTATTGATGACCAGC	ref_5083_reverse	143	57	178	121	53	122	40	131	62	134
CCGTTAAGATGTTTTC	ref_5083_reverse	97	41	145	131	34	119	34	114	24	101
GCTAATTTATTCACGT	ref_5083_reverse	57	17	83	82	17	72	32	70	25	51
ATGCAACCTTGCTGGT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTACGACTTTTGA	ref_5083_reverse	50	20	55	55	28	46	20	48	19	37
GTGGTCTTTGCACTGA	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TAATTTGTTAGGGGTT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCCAGCATCTAAC	ref_5083_reverse	72	36	94	81	29	70	45	90	56	74
GTACAGGTGCCTGACG	ref_5083_reverse	64	28	75	70	18	62	25	52	22	53
GGTCCCTAGCCTTATT	ref_5083_reverse	25	5	23	23	8	19	18	21	7	17
TAAATGTTCTACATCT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTAGAGCTGCATT	ref_5083_reverse	114	36	144	128	30	119	39	110	34	94
TAGGTCCTCTCTTTTG	ref_5083_reverse	115	36	119	101	17	94	30	111	42	91
ACAGTTTTTAAAAGTA	ref_5083_reverse	142	66	216	165	55	119	73	141	69	129
ACCAGACTGACCCTTT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTACTGTGTTAT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGCGTCGGTTGCA	ref_5083_reverse	913	366	1148	967	378	880	381	918	424	802
GGCTTAATCAGTTGTT	ref_5083_reverse	38	10	49	43	14	36	10	30	19	33
TTAGTATGTCAAAGTT	ref_5083_reverse	193	65	293	222	80	186	90	209	83	193
TGGGTTGGAGCGGCAC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTTGCATCTCTCT	ref_5083_reverse	46	14	76	94	21	44	25	86	25	60
GTCCATTCGAGGCATA	ref_5083_reverse	121	41	154	126	44	137	49	120	47	113
TTTAAGGTAGAGGCGC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CATGGGCAGCATCTTT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TACCTAAGCGTGTATT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGCCTTCCTCTAG	ref_5083_reverse	57	21	72	47	25	47	29	52	18	38
CACAAGCCTGCTATCA	ref_5083_reverse	205	54	225	197	69	181	77	177	68	172
CTTCGGCATCTGAAAT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTGGTCTTGGAC	ref_5083_reverse	54	10	52	48	18	58	23	68	14	40
GGTAGTCCTAGATGCT	ref_5083_reverse	524	176	624	523	201	443	193	488	217	419
TGGTTTGGGTTTCCCT	ref_5083_reverse	113	46	156	130	42	126	44	121	41	108
GGTGTTCTGGGTTATG	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTCTCGGAGCCGC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAGAAATCCTAAG	ref_5083_reverse	107	35	115	103	42	123	36	113	23	87
GACATAGATGGTGGCG	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
GGATCGTCAACGCATA	ref_5083_reverse	49	10	71	79	19	48	22	52	20	52
CTCGTTAGTGTGACCG	ref_5083_reverse	30	9	18	28	7	17	7	18	9	24
CGTACTGCTATACTCA	ref_5083_reverse	51	31	65	74	31	56	24	55	27	63
CGGGACGACGGATTTA	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCATTGCACATGT	ref_5083_reverse	99	34	121	95	45	90	38	89	29	90
TAAGGACTGGCATTAC	ref_5083_reverse	30	5	34	18	6	24	9	23	10	13
GTAAGTGTCACTTGCT	ref_5083_reverse	258	67	356	283	88	267	93	233	96	247
TATCTTTAATGCCGTT	ref_5083_reverse	156	43	190	171	67	168	41	158	55	98
CTTGTTTTGTTACTGG	ref_5083_reverse	191	68	184	169	76	141	75	154	71	129
CCGTGGGCTATTGGCT	ref_5083_reverse	135	49	156	150	44	134	46	129	59	115
CGTTATTGGCGATATC	ref_5083_reverse	64	22	51	64	23	50	35	67	18	43
AGTCCTAGGCATTGCG	ref_5083_reverse	85	38	89	95	42	86	41	79	36	66
TAACCTCCGCAATCTC	ref_5083_reverse	77	30	113	101	19	63	20	95	29	89
AATGAATTCGCAGTGT	ref_5083_reverse	41	16	43	53	6	37	7	33	17	47
ATAATTTAGGTTGTGA	ref_5083_reverse	137	58	175	180	61	156	57	141	55	123
CCAGTCTTATACCTTC	ref_5083_reverse	220	71	220	206	80	176	85	191	65	172
TTTTTCCCCGCCTCGT	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TAATTATCATCTCGAC	ref_5083_reverse	74	30	93	68	22	70	23	74	21	84
TCGGGTCCAATGTACA	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
CACTCGTAGATTCTCC	ref_5083_reverse	19	18	27	18	7	25	14	18	16	23
CAGAGTAATCATTTAG	ref_5083_reverse	2	2	3	5	1	4	2	2	2	2
TGTTTGTTAGAAGCGC	ref_5083_reverse	254	71	303	243	86	206	72	189	80	205
ACTACGGGCGGACTTA	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTGGCTCAACTGC	ref_5083_reverse	65	16	71	76	31	57	23	65	30	62
GTCCTCTGCCATGGTA	ref_5083_reverse	25	7	47	35	28	27	15	34	10	32
CTAGATTATGGTCATG	ref_5083_reverse	18	6	20	14	9	13	3	13	7	12
TGCGTTTAAATTTCAC	ref_5083_reverse	91	25	110	80	33	78	31	89	22	54
GAGTTCTCGAGGACGC	ref_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCCTAGCTGAGATCAA	ref_5083_reverse	199	58	239	218	74	221	58	197	85	188
CTCTCTGGAGGCCTAC	ref_5083_reverse	239	74	318	261	88	235	97	280	106	232
TTTGATTTTCGCCCCT	ref_5083_reverse	49	18	46	46	8	40	20	39	26	35
TTAATCCAATTCGTTA	ref_5083_reverse	98	29	122	116	36	87	25	93	35	79
AAGATAGCGCGGCGTC	ref_5083_reverse	103	25	142	124	27	92	40	108	33	87
CCCAGAGGCTCAATGA	ref_6110_new	0	0	0	0	0	0	0	0	0	0
AGTACTATTGTCACGC	ref_6110_new	44	62	81	40	65	54	50	56	71	32
CATTGGATCGTTGGTA	ref_6110_new	23	21	21	16	21	29	33	22	22	23
GGGGGCCGAATGCTTC	ref_6110_new	22	22	22	11	15	17	12	19	20	23
TCTCATCTAGAATCTC	ref_6110_new	4	4	6	3	8	3	4	2	2	3
GAAGTATTGCTATCCC	ref_6110_new	63	67	95	81	95	59	89	64	101	66
GCTAACTATACGCAAA	ref_6110_new	0	0	0	0	0	0	0	0	0	0
CGCCCTATGTGCAAAT	ref_6110_new	99	113	94	121	119	87	130	88	125	80
GTCTTGGTGTTATCCC	ref_6110_new	0	0	0	0	0	0	0	0	0	0
CTATCCCTATTATCCT	ref_6110_new	36	55	47	34	51	43	69	39	65	30
TTTCTATAACTGGCGT	ref_6110_new	17	30	20	11	13	16	20	14	22	10
GCTTATGTAGTGCGTT	ref_6110_new	8	13	12	14	12	8	7	5	7	9
GAGCGAGTTGGCGTCG	ref_6110_new	28	54	48	41	36	43	50	45	52	39
GCATTTACTGAATCCT	ref_6110_new	44	44	55	42	51	38	49	43	57	50
GTCCTGTGCATGGACG	ref_6110_new	9	14	14	13	14	12	9	17	12	15
AGCACATTATTGACTG	ref_6110_new	86	63	82	75	82	74	114	58	92	72
AAGCGTTCTTTCAGGT	ref_6110_new	16	24	29	28	19	15	19	10	13	13
AATTCTGTGTTTGGTC	ref_6110_new	0	0	0	0	0	0	0	0	0	0
TCTTCCTAGTCCGTAG	ref_6110_new	36	51	35	49	60	49	55	36	67	45
GCTTGGTTTCCCGTAC	ref_6110_new	41	20	40	27	32	26	25	29	32	22
GCCCATTAGTGGACGC	ref_6110_new	159	166	207	178	170	180	159	169	177	150
ACGAAGAATTTATACA	ref_6110_new	134	144	148	118	132	114	136	117	137	130
CCAGGGCGCCTGTCCT	ref_6110_new	8	27	5	4	23	4	25	6	30	5
TGTTTGTCGACCTCCT	ref_6110_new	22	34	29	23	18	27	23	24	31	21
TAATTTCGATATAGTT	alt_6110_new	54	77	64	65	75	59	77	49	72	62
TCTGAGTAATGATGTA	alt_6110_new	138	140	165	144	130	134	163	125	166	144
GTCTAGTTCGGGAATT	ref_6110_new	0	0	0	0	0	0	0	0	0	0
AAAGCCGAGTTCTCGG	ref_6110_new	115	128	190	149	119	93	113	109	130	93
GCTACTTTCGCGTCCG	ref_6110_new	24	29	35	28	32	26	33	18	27	16
AACTAAGGGTAAAGAT	ref_6110_new	0	0	0	0	0	0	0	0	0	0
CCGCTTCCGCGAGGAT	ref_6110_new	0	0	0	0	0	0	0	0	0	0
CGCCCGAAATTGTCGT	alt_6110_new	0	0	0	0	0	0	0	0	0	0
GGCAAACTTTGGTCGC	ref_6110_new	6	8	17	6	17	9	6	13	3	12
GATGTGTCTGGTCGCC	alt_6110_new	61	94	97	65	79	72	81	76	87	62
CGGGGATGAGTAAGAT	ref_6110_new	19	25	13	13	21	14	31	19	30	23
TTTGAAAAAGCCCTAT	ref_6110_new	37	25	55	42	25	34	51	35	45	29
CACGCATTCATGGAGC	ref_6110_new	8	13	11	11	12	13	10	11	17	15
CTCCCTTGTGCGCCGG	alt_6110_new	16	58	11	11	46	18	54	10	50	12
TTTACAATGGGAATAC	ref_6110_new	86	79	83	80	94	82	89	78	102	86
TAAGCATTATATCGAG	ref_6110_new	19	15	24	14	15	14	27	11	23	18
TCGCAACGGGACTCGA	ref_6110_new	0	0	0	0	0	0	0	0	0	0
AGCTTCAATCGACCAC	ref_6110_new	8	6	10	7	9	6	11	4	11	13
CACCCGGTAGGCCAGT	ref_6110_new	4	13	11	8	9	6	16	5	7	3
CCGGGGCCGATCGAGC	ref_6110_new	37	43	58	31	53	41	43	50	43	51
CTGAAATATAATATTG	ref_6110_new	50	33	36	42	40	34	50	47	47	36
GCTTCTGTGTACCGAG	ref_6110_new	0	0	0	0	0	0	0	0	0	0
AATTCTTTGGATTGAG	ref_6110_new	9	9	19	4	7	11	11	5	8	3
AAGTTGGGTGTTACGT	ref_6110_new	27	29	30	31	29	25	42	27	39	19
GTATCGCACGAGGAGT	ref_6110_new	33	25	34	32	49	44	29	43	47	39
TTGTCTGCTCGTTCAG	ref_6110_new	25	19	49	27	20	22	30	23	35	29
GCAATGCAAAGACTCT	ref_6110_new	6	5	3	6	4	8	1	2	5	3
ATCTAAGGGTAAAGAT	ref_6110_new	266	274	400	308	308	253	311	283	305	242
GCAGGTAGTTAATGAA	ref_6110_new	39	44	48	53	49	41	37	43	62	43
CACGGAGAACTTTTCT	ref_6110_new	37	35	44	37	37	24	40	31	45	25
TGCTTTCTTAAACAGC	ref_6110_new	25	20	38	25	20	32	29	18	29	33
GATGTTTAAAGAAGCT	ref_6110_new	0	0	0	0	0	0	0	0	0	0
TCCGGTAAATAATTAC	ref_6110_new	0	0	0	0	0	0	0	0	0	0
TTCAGTACCCGAATTG	ref_516_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGGGCGTGTCTAG	ref_516_fdr	51	105	45	45	102	37	94	34	120	32
TTTTCCTGTTTCTAGC	ref_516_fdr	0	6	2	3	2	0	2	4	2	0
AAATAGGCCCTTATCA	ref_516_fdr	5	2	4	5	5	2	2	5	3	4
TCCTTAGGTCATTGTT	ref_516_fdr	7	7	10	3	18	7	12	6	10	3
CAGTCAAGGTACGATA	ref_516_fdr	7	18	16	8	29	9	24	5	25	5
TGCCCAACTTTCCTTA	ref_516_fdr	2	3	5	6	6	3	7	1	6	5
AGTTCAGTCACCCAGT	ref_516_fdr	33	43	37	22	46	29	45	29	46	27
AGGGTTATTATCTTCG	ref_516_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTTTGATGGATT	ref_516_fdr	40	65	44	47	66	52	79	44	69	50
GGTGCATTCCGCATCA	ref_516_fdr	73	100	89	64	111	60	107	62	116	46
GGTGAGTTTAAGCGCG	ref_516_fdr	41	48	41	39	53	44	62	41	55	26
TCGAGTCTGAAGCATT	ref_516_fdr	0	0	0	0	0	0	0	0	0	0
CTGACGATAGGTCCCG	ref_516_fdr	44	60	53	38	62	46	48	41	63	44
CTGTCCAATATTATAA	ref_516_fdr	39	79	47	37	66	43	80	34	73	34
TGATTTTCTATCTCGG	ref_516_fdr	12	34	12	14	18	14	33	14	25	13
GCTTTCATGCGGGTTA	ref_516_fdr	13	18	22	12	28	7	24	17	38	19
CGATGTTCGAGTCGTC	ref_516_fdr	79	95	83	75	82	61	75	59	63	69
ATAACCGGTTAGAGCG	ref_516_fdr	8	12	6	8	7	7	16	8	17	4
GGCTATATCTTCTACT	ref_516_fdr	10	23	22	9	19	15	17	14	19	16
GGGTTGCCGACCAAAC	ref_516_fdr	7	18	22	15	23	21	24	16	28	19
ACGTAATCAGTGCCTA	ref_516_fdr	49	58	68	57	71	57	80	55	82	48
CGAAGCGTTTACTATA	ref_516_fdr	33	75	52	44	65	41	75	30	68	57
ATTCACCCGAGCGCAA	ref_516_fdr	35	54	54	48	63	37	66	31	89	37
GTAGCGCATCCGAGTG	ref_516_fdr	68	133	89	78	146	68	160	55	141	53
GGTGCATTCCACATCA	ref_516_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGTACATATGATT	ref_516_fdr	0	1	1	2	2	2	0	2	1	1
GTGTCTCGACGACCAG	ref_516_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCGTTTTAACCGT	ref_516_fdr	2	6	2	0	3	3	1	0	1	2
TCCGTGATCGCATCAT	ref_516_fdr	11	30	18	13	29	16	41	14	38	16
CACGCTTTCCGTACCA	ref_516_fdr	32	35	35	41	47	16	52	16	45	29
GTATTCTCTTAGCCAC	ref_516_fdr	7	30	14	12	18	15	24	15	35	15
CGTGGCCATACGGAGT	ref_516_fdr	30	58	51	41	64	35	62	41	81	21
CGCTCCGCAGCGAATC	ref_516_fdr	42	52	39	31	52	23	61	29	56	34
TCTTGGATCATCCCTG	ref_516_fdr	66	94	77	69	72	58	97	54	98	48
AAATATGCCCTTATCA	ref_516_fdr	0	0	0	0	0	0	0	0	0	0
GTTAACTATCAGTGAC	ref_516_fdr	14	14	27	15	28	20	24	13	34	13
TTTAGGTACGTGAGCC	ref_516_fdr	0	0	0	0	0	0	0	0	0	0
AACAGCGGTAAGAATG	ref_3262_reverse	4	6	6	3	5	5	4	5	2	0
CCCGCCGTTCGTCTTA	ref_3262_reverse	6	13	13	9	24	5	25	10	10	12
ATTTCCACGGGAGCTA	ref_3262_reverse	5	10	11	12	12	9	14	13	11	15
ACAGCGAATCTACTCA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTACTGCCATCCGTTA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TATCAAATGCCAAATT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCGCCACCTATCC	ref_3262_reverse	35	28	41	44	31	43	33	30	32	38
ATTTATAAACACTCCG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GATAGGTCTTGAGCAC	ref_3262_reverse	58	60	57	48	68	54	75	41	65	37
AAACGCTTCTATACGC	ref_3262_reverse	91	92	78	77	76	60	96	69	68	53
TCTCTTCCGACGGTTC	ref_3262_reverse	8	10	11	11	10	11	11	8	12	11
CGTGGTCTGTCCCGAC	ref_3262_reverse	96	88	119	80	117	91	95	85	75	84
TGTGCGGAGTTTTATT	ref_3262_reverse	46	51	59	43	48	50	65	31	50	38
ACACGGCATTTTACTC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CCCACTAAAGATATTG	ref_3262_reverse	56	60	68	44	70	50	64	46	50	54
ATACAGAACCGCATTA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CTTACATAGGCAACCC	ref_3262_reverse	17	7	12	11	9	8	15	9	8	6
ATTCCAGATATTTAAG	ref_3262_reverse	36	39	36	32	39	37	36	28	58	25
TCGGTAACGGATTGTA	ref_3262_reverse	32	46	52	36	39	37	56	56	52	34
CCGCTTTGGGCCGCCA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TACGAACCGGCGCTTG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TACTTCGCATTGGTCT	ref_3262_reverse	11	1	8	19	6	8	3	12	9	6
AATAGCGTGGGTGGGC	ref_3262_reverse	9	6	4	4	3	3	6	3	7	2
CGTTACCTGCTATTGG	alt_3262_reverse	26	49	27	22	42	31	39	31	59	27
ACAGGCTCGTCGGTTA	ref_3262_reverse	85	100	129	118	97	82	103	97	88	96
TTGATTGTATTGTTCG	ref_3262_reverse	23	30	36	24	21	22	40	21	32	24
CACGGTCCTCGGTATG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTTTGGGTAGGGG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CACGGGGCAAACTTAA	ref_3262_reverse	1	2	0	0	3	0	5	0	6	0
TCAAGGTTGTCTTCCG	ref_3262_reverse	45	43	58	38	48	61	42	35	51	42
TATTCGACAAATTATT	ref_3262_reverse	2	5	4	6	2	8	2	0	3	7
TCTCACTTTCCAATGT	ref_3262_reverse	7	7	10	10	10	9	5	7	6	10
CCCGGCCCTCGACTCA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTAAAATGGACGG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTTTCCTTTGCCT	ref_3262_reverse	2	3	0	1	1	1	0	1	3	0
GTTTCCGATGTGTGCG	ref_3262_reverse	56	70	96	61	60	51	79	53	57	59
ACATGAGTTTTACCCT	ref_3262_reverse	14	13	19	14	11	8	18	16	17	21
TTGTTGTACTACGTTT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCGAATCTACTCA	ref_3262_reverse	197	195	248	238	239	210	254	181	213	190
TTTAATTACATTAGGG	ref_3262_reverse	17	4	10	10	16	11	10	13	14	13
TTCTCTCAACTCCGTA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGGCATTTGCCGA	ref_3262_reverse	15	14	10	7	15	10	16	12	21	3
TTTTCTTCAAAGTTCG	ref_3262_reverse	13	27	17	24	19	18	16	16	23	19
GTACAGGTGAATAAAA	ref_3262_reverse	78	68	89	85	98	70	75	78	94	74
TGGCGATTTCAAAAAT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
AAGCGACTTATCTCGA	ref_3262_reverse	97	69	75	69	65	65	66	76	71	66
TTTTATGGCATTGGGA	ref_3262_reverse	13	11	8	12	14	13	17	12	10	7
GGTGCCAGGACGTTGT	alt_3262_reverse	3	5	11	3	5	3	5	6	3	5
GTATTGGTTGGACCCT	ref_3262_reverse	95	83	93	92	116	84	108	84	97	77
ATTCACTGTTTTTCTC	alt_5881_new	24	40	36	38	35	27	36	39	42	34
GTATTGCCTATTTTCG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GCACGCATTTTGTATG	ref_3262_reverse	8	4	5	4	2	4	12	3	9	5
TACACGGGATTGTCCT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GCTGTGGAGTGGACTT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAATGATCGTTTA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCGCAGGAAAGGGAGA	ref_3262_reverse	23	28	37	31	30	31	21	29	18	29
CCCTGTTCACAATAAT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGCGCATGGTCCT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CGGCTAGCCAATAGGC	ref_3262_reverse	28	37	47	30	41	31	40	29	48	29
TTGTTCCCACTCACGT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTAGTGTTAACTT	ref_3262_reverse	76	70	91	65	86	71	79	76	76	69
TAACTAAGGTAAAGTT	ref_3262_reverse	27	28	33	22	19	26	27	20	26	36
CCAAGTCATGAATAAG	ref_3262_reverse	55	55	69	54	67	53	71	50	69	37
ATTTTGTAGTTAGTAG	ref_3262_reverse	14	12	17	17	13	6	10	11	11	10
CCGGTTCTCCAGGTGC	ref_3262_reverse	2	26	7	10	16	7	11	6	17	5
GGCGCGTATCTCGCTT	ref_3262_reverse	67	74	99	64	63	75	72	59	71	66
CTGGTGACTATCTGTA	ref_3262_reverse	17	19	16	21	20	18	16	12	22	12
ACAAAAAGGTCTGCTC	ref_3262_reverse	22	26	44	33	29	38	41	23	38	29
CCACCTTTGCGTCACA	ref_3262_reverse	0	1	4	1	0	2	2	3	0	1
TGCTTCAAATTTTTTG	ref_3262_reverse	6	8	12	10	6	7	13	10	10	6
GAATGTGTCATTCTGT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCCTCGGATACAG	ref_3262_reverse	9	25	13	16	23	15	34	17	24	15
TATTGTCGGGTCAGTC	ref_3262_reverse	7	12	8	9	9	9	8	2	9	5
TTGGACCGTGTGTAAT	ref_3262_reverse	31	23	29	15	20	15	31	17	29	17
TTCTCTAAGGTCTTGT	ref_3262_reverse	9	9	15	15	8	5	11	10	4	9
GTCCCACAACATGGCT	ref_3262_reverse	24	20	37	20	25	27	17	21	21	19
GTCTCCTGTCGGGGTT	ref_3262_reverse	17	26	19	20	21	15	21	21	22	25
TTGTGCGTCTCGCTTA	ref_3262_reverse	106	119	153	124	98	130	128	125	140	103
GGCTAATAACGCTCTG	ref_3262_reverse	31	27	26	27	34	28	41	37	36	39
TAATATGGCTTTGCGC	ref_3262_reverse	18	33	25	13	18	22	21	16	17	20
TACCCCTCGGGCTAGA	alt_3262_reverse	3	6	11	2	0	7	1	0	3	6
GTATCATTGAAACCAC	ref_3262_reverse	52	61	66	56	51	43	47	58	53	54
CGACGTTTGTACCAAC	ref_3262_reverse	56	74	59	65	66	46	60	59	79	45
GGCATGACCCGCACAC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
AATCGGACATGCGTAA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTGTACCATAATT	ref_3262_reverse	8	18	17	7	15	22	15	10	16	8
CGGCAGCACCCTGAGC	ref_3262_reverse	3	5	7	4	6	3	5	5	3	6
GGGTTTTAACTGTCGC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCTCCTTCACATG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCTATCGTTTGTT	ref_3262_reverse	120	98	162	106	119	113	100	87	115	99
CAGGTTGTTAAGCATA	ref_3262_reverse	17	28	24	8	38	22	18	22	20	22
CTGCGTCCTCAGCTTC	ref_3262_reverse	49	37	67	67	49	53	46	59	52	43
ATCTTTTTTCGTTGCT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTAGTCGGGTTAC	ref_3262_reverse	48	53	60	48	65	40	52	46	58	40
CTTGGGTGGGGTGCTT	ref_3262_reverse	30	34	46	40	48	41	49	34	39	45
CCACAGGTTTTTACTA	ref_3262_reverse	14	27	27	26	35	17	46	30	34	15
ATGCTCGACAGGTAGA	ref_3262_reverse	2	3	1	0	0	3	0	0	1	0
CGTCTATTGCTTGCAA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGCTAGCTTTCCT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCCCGAACGGCCC	ref_3262_reverse	19	18	21	12	20	17	17	20	21	18
GTCTACACTGGTTGCA	ref_3262_reverse	26	19	15	20	18	15	23	13	16	25
CTGTAATTGATCTGGA	ref_3262_reverse	130	142	163	146	150	139	159	149	131	120
AGCCAAGGCGGATGGG	ref_3262_reverse	15	9	11	15	17	4	22	19	22	17
CACGACCATATAATCA	ref_3262_reverse	11	8	4	7	10	9	11	7	11	6
ATAGTGAATATTTATC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATATCGCGCACTGTAA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTCTATAGACAAT	ref_3262_reverse	14	18	10	8	24	15	11	8	12	17
AGTAACCTATAACAAT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTGGGCTGTCTAA	ref_3262_reverse	18	8	29	18	26	18	18	17	17	22
GACAGCGGCGGCCAGT	ref_3262_reverse	11	11	17	13	10	5	14	16	16	13
TTAGATGCCTAGGTTG	ref_3262_reverse	72	50	97	58	83	73	88	63	95	67
AGCGTTCTCGCACTTC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CACTTACTTTGCGTAC	ref_3262_reverse	20	21	13	23	29	16	33	30	35	14
TAGTGTGGCTTCACGC	ref_3262_reverse	3	5	6	13	5	7	2	5	7	7
ATGGTTCGCCTTGCGC	ref_3262_reverse	79	80	117	103	78	83	86	93	124	78
TACGGCCTCCTCTTTT	ref_3262_reverse	16	23	32	18	25	19	32	12	23	19
CGTACACATTACATGC	ref_3262_reverse	16	29	17	23	27	13	28	21	35	17
TCTCCTTATTACTGAG	ref_3262_reverse	9	8	9	10	12	9	4	5	13	4
TAGTCTGGCTCCGTAC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GCTATCAGTAGCTAGT	ref_3262_reverse	24	35	22	20	34	23	15	23	23	30
ACCTGGATTTGGCGTC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GCGACTCGATGTATAG	ref_3262_reverse	117	102	102	97	84	81	113	93	112	124
GAAGCAATCAGGACAG	ref_3262_reverse	17	20	23	26	16	15	20	23	23	21
ACTTGTTCAGTTCGCA	ref_3262_reverse	36	29	27	27	30	18	34	25	31	17
TCCCGGAGTGGAACAC	alt_3262_reverse	3	1	9	3	7	1	4	1	4	1
CTATTCTTGATCTCTT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATTACGGTGCCGTTGT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTTGGTCATTGG	ref_3262_reverse	2	3	2	1	8	2	4	1	2	8
CTGAAATTAATACATT	ref_3262_reverse	48	39	52	53	41	45	58	39	36	44
TTCTTGGAGTGGGCTA	ref_3262_reverse	1	5	4	2	6	5	7	4	1	2
CCTTCCACGCTCCCCT	ref_3262_reverse	9	23	25	16	23	11	33	20	21	6
CGTCGGTATACGATCT	ref_3262_reverse	6	10	13	8	12	5	9	8	13	8
TCCTTGCCCTTGACCG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
CAATTGAAATTATGAC	ref_3262_reverse	25	18	31	9	22	23	24	17	35	14
AAATGATGTTTGAGTC	ref_3262_reverse	77	67	84	86	84	67	76	75	82	73
CGCAGCACAGTCCATA	ref_3262_reverse	26	24	34	20	42	23	37	19	33	15
CCTCGCCTGCAGATCG	ref_3262_reverse	70	63	61	49	66	59	69	54	75	57
CTGGGTTTGCCTCGAT	ref_3262_reverse	13	8	10	2	7	14	12	7	8	10
CATGTGTGGGGTTCTA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TATATTATTAATATCC	ref_3262_reverse	18	15	27	18	21	20	23	15	25	17
GGGGTTACCAGAGTAG	ref_3262_reverse	47	43	59	57	49	37	49	53	53	36
TAAGCAACTGTGAGCT	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGTTCGTGCGTTA	ref_3262_reverse	39	54	53	52	51	43	52	34	61	37
CGTCGTTCGCAACCTA	ref_3262_reverse	18	24	29	28	16	33	35	22	38	17
GAAATTGCCATCATTG	ref_3262_reverse	10	16	14	14	9	15	14	13	16	10
GTTCGTGCCGCTGACA	ref_3262_reverse	32	35	17	33	36	38	37	25	27	26
CCCTTCATCGGTATGG	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTCATTGGTTCGC	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTGGCCCTTGTTA	ref_3262_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTGCTCGTGGGCT	ref_3262_reverse	136	140	144	121	143	114	156	112	122	107
GATACACTAGCTTCGT	ref_3262_reverse	60	53	68	58	50	53	63	44	54	43
TACCCCTGTTTCCCAT	ref_3262_reverse	26	25	29	32	23	24	15	21	14	21
CACTCCGTGCTTGTTG	ref_3262_reverse	21	52	56	35	37	25	39	33	52	23
TGCCAACCACTGTTTG	ref_3262_reverse	20	29	35	25	40	22	36	21	34	17
GCGATTCTCCATTTAC	ref_3262_reverse	20	21	38	21	20	17	31	28	18	16
TGGCACCATTTTCCCA	ref_3262_reverse	120	136	154	137	142	129	155	126	188	119
GTTTTACATCAGATAG	ref_3262_reverse	31	34	53	34	36	49	45	36	35	34
GCGCCTTTTTACTAAG	ref_3262_reverse	9	8	12	8	3	6	7	5	11	6
CTCTAATACAGCTGGT	alt_3359_RC	33	45	26	47	36	28	39	33	36	30
AGCACTGCCTATGTAC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GTACGGCTAGCCCAAG	alt_3359_RC	2	2	2	5	5	4	0	4	2	2
CACTATCATATGTGAG	alt_3359_RC	5	13	15	12	20	12	5	13	18	9
TATGTTCCCTAAGGAG	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
TGCGGGAGTAGATTAC	alt_3359_RC	21	8	11	17	15	12	10	17	16	8
TAGAACACTATGCTGT	alt_3359_RC	73	110	79	89	67	57	104	52	106	53
TCGACCGAGTAAACTT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
CGCTGAATCGTTGCCT	alt_3359_RC	21	27	17	30	28	24	37	9	31	21
GATATCTGCCATAATA	alt_3359_RC	24	23	30	18	27	21	16	17	14	25
CTGGTTCTATCCTATG	alt_3359_RC	245	284	281	265	289	211	296	217	305	204
ATGTTTGCGCTCAATG	alt_3359_RC	43	43	51	40	45	29	65	39	49	42
TTATGGCGAAAATTTA	alt_3359_RC	216	190	289	233	191	210	206	201	237	192
ATAATGCTCCGCGGTT	alt_3359_RC	7	7	12	4	7	7	8	4	9	7
GGTCCTAGTTTCTAAC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
ACGGGGGGGTAAATAT	alt_3359_RC	62	39	65	61	54	63	71	58	62	59
TACACTTTTCGAAGTA	alt_3359_RC	21	41	44	28	48	37	41	32	51	27
CAGGATTCGTGGTAGA	alt_3359_RC	207	213	266	226	203	193	229	166	233	181
TCGTTAGATACAGGGA	alt_3359_RC	109	143	166	122	138	106	136	113	133	118
CCATACCGATTGCTAA	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
TTTCGAATGCGTGAAT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
CCTTGCCGCTGTAGAC	alt_3359_RC	15	18	14	17	27	8	17	13	18	9
GATACATTTCAGATGG	alt_3359_RC	95	109	93	96	86	114	132	113	121	90
GTTATAGTTAGCCTCT	alt_3359_RC	6	21	16	27	5	19	18	7	16	16
GCATCCTCGACACTGG	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GCTCTTCCTACACGAT	alt_3359_RC	24	22	29	40	28	27	32	19	25	15
AACCAAGCAAGATAGT	alt_3359_RC	1	0	0	0	0	0	0	0	0	0
GCCCTCTATCTAGAAC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
AGGATGGCTTATCACC	alt_3359_RC	7	11	17	8	13	8	9	5	6	7
GGTATTGCGTACCTGC	alt_3359_RC	0	2	4	2	2	5	3	1	4	2
TCGGGTGAATAGGTCG	alt_3359_RC	10	4	7	10	3	11	10	7	12	10
GATGGCTACATGTAAG	alt_3359_RC	9	6	10	7	4	7	10	3	4	2
ATCCGTCGACGTAGTT	alt_3359_RC	5	11	4	9	7	3	6	7	6	4
GGATCTAGTAACCGGC	alt_3359_RC	5	0	2	0	2	5	3	2	4	3
GAGCAGCTCTACTTAA	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
ATTGCCTGAGTGGTAC	alt_3359_RC	2	5	6	5	4	3	9	2	5	2
AGGCATATGGGTAGGT	alt_3359_RC	81	74	90	84	89	79	86	59	86	59
GCAACAGTCGGACGCA	alt_3359_RC	43	54	47	39	59	42	49	29	54	30
TGGCAGCAAACCGGGT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
TCCCTCTGGCCGCCCC	alt_3359_RC	23	27	28	31	22	33	19	31	24	17
TCGCCCGAATTAGGAG	ref_3359_RC	45	30	46	28	41	42	44	29	48	35
AGAGTCCTTGAGGTCT	alt_3359_RC	4	5	1	2	1	0	4	2	1	1
ATCTCTCCGAGCGTGA	alt_3359_RC	1	2	4	2	1	5	2	0	2	1
AACTGGATGTGAAACT	alt_3359_RC	13	13	11	9	12	9	14	12	12	6
TGATACGTCAAGTCCC	alt_3359_RC	22	22	11	13	11	13	14	22	16	14
GGCCCCATTAGTACTG	alt_3359_RC	1	1	0	0	3	4	4	3	1	1
TGCCTCAAAGTGCTGC	alt_3359_RC	69	95	89	88	110	76	101	71	92	58
GCCGTCGCCACACCAA	alt_3359_RC	30	19	27	41	23	16	23	21	32	26
TATCCCAGGGGTGGCC	alt_3359_RC	18	20	30	16	13	19	23	16	31	17
CTTTGTTCGATGGATG	alt_3359_RC	61	103	76	98	98	78	74	71	91	55
GTCGTTCACATTCATA	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GAACCCTGCCAAGGCT	alt_3359_RC	2	2	4	4	2	1	3	1	3	4
TCCTGGACTGCCTAAT	alt_3359_RC	6	18	15	8	17	14	34	16	32	13
ATTTTAGACCACTTTT	alt_3359_RC	11	7	7	2	8	10	1	8	10	3
CCTATCTAGCTCCTTT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCGTTACCGCGA	alt_3359_RC	28	32	29	29	36	28	32	34	37	30
ATGCTGCTAAGCTTTC	alt_3359_RC	39	50	35	35	36	47	26	29	33	29
TCGGTTACTGTTTTTC	alt_3359_RC	13	25	14	11	30	14	32	3	40	6
CATCATTTCTCTCCGA	alt_3359_RC	19	29	26	22	25	21	22	20	35	25
TTGGCCAGTCTTTGCC	alt_3359_RC	20	22	16	15	24	19	18	20	21	16
AAATTTTCTTTTGAGA	alt_3359_RC	41	32	46	44	50	33	38	39	43	35
GACGTTCCACATTTTT	alt_3359_RC	22	26	24	25	21	25	24	20	24	9
GTAACCCTCGTTTGCG	alt_3359_RC	18	28	37	22	48	25	29	21	40	20
TTAATTAACGGGGACC	alt_3359_RC	30	23	27	31	28	30	44	28	31	32
TGGCGATAATGGCACG	ref_3359_RC	69	81	73	78	104	65	97	90	89	71
TGTTATATATTGAATT	alt_3359_RC	13	13	15	18	21	14	23	20	12	15
TTTTTACTTTGGCCCC	alt_3359_RC	59	67	63	60	72	68	87	56	66	55
TTCTCCATAAACTCCT	ref_3359_RC	94	103	108	89	102	103	103	110	98	68
TCCTACTTATCATTCA	alt_3359_RC	35	29	23	25	26	18	27	38	18	21
CTAAATCAGCTTTCAG	alt_3359_RC	7	12	14	11	11	10	12	8	10	11
TAGGACAGTTTATGTT	alt_3359_RC	57	63	71	61	71	57	66	48	70	43
CGTCGTCGTCCGCTAC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GATTCTAATAATGTCA	alt_3359_RC	62	64	64	49	66	72	56	62	74	50
GTTTTCTTTTCGCCAT	alt_3359_RC	15	12	18	22	13	18	7	10	13	16
GGCGGGAATATTGGCG	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
AGTGGATAAATTGGCC	alt_3359_RC	24	36	43	28	31	28	32	34	47	25
TGGGTTATTTTCATTG	alt_3359_RC	69	76	72	58	73	67	93	52	83	62
AGAAGTATCCCTATGG	alt_3359_RC	16	17	17	18	25	27	20	36	16	17
CTAAGCAATTGTCTAT	ref_3359_RC	85	117	90	79	122	84	138	89	121	86
ATTGTTAATCCGGTCT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GGCTCTTCGGCCTAAG	alt_3359_RC	3	4	4	4	7	4	3	3	8	2
AGCTTACGTTTATCTT	alt_3359_RC	40	45	35	37	43	34	39	36	48	42
GAGATTTTTAAGTCGG	alt_3359_RC	29	27	28	26	16	25	17	33	34	19
TGTTTGAGAAAATTAT	alt_3359_RC	15	14	15	7	15	10	10	12	16	16
TTTGTTACCATCTGAG	alt_3359_RC	2	4	5	8	7	6	4	8	5	0
AGACCCGGGCAGGGAT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
TGCGGGTCCAATATGC	alt_3359_RC	14	33	28	22	27	14	26	12	33	21
CAACATCCGTTCCCAG	alt_3359_RC	9	11	14	12	10	8	11	7	13	9
CCATTGTTCGGGTTCG	alt_3359_RC	44	47	47	32	58	33	58	46	55	30
CGTTTCTAGATACAGC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCGCTAGCTTTT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
CAGCGGTAATTATTAT	alt_3359_RC	113	114	120	109	118	101	90	80	105	82
TTAAGATTCTGTTACT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
ATTACTGCTATTTGGT	alt_3359_RC	2	6	6	6	6	7	6	4	11	4
CCCCTAGTTGACATAC	alt_3359_RC	44	41	57	32	34	43	55	37	49	46
TTAGAATCCTATGGAT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
AGTGATATCCAGGCCC	alt_3359_RC	38	16	39	37	16	25	15	33	22	22
CACTGGGTTATCCTAG	alt_3359_RC	46	52	54	47	64	45	55	28	44	31
TCTATTGTTAATCTCC	alt_3359_RC	4	10	16	5	9	8	13	5	5	6
TGCTGCAGGTTTTCCC	alt_3359_RC	6	11	12	4	18	5	11	5	11	6
TCACACCTCTTCGTTT	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GGCTAATCAAAAATAA	alt_3359_RC	166	187	202	171	181	138	170	170	203	148
AAGAGAGATGTTTGTA	alt_3359_RC	53	75	91	64	69	83	76	56	75	46
TAACGAAATTAATAGA	alt_3359_RC	24	19	28	24	39	39	36	32	26	29
GTCGGCCTATAACAAC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
CGTATCTTGGTTTGCC	alt_3359_RC	129	169	148	135	170	102	171	106	164	100
CTTATATGATCTCTGA	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GGATATACTCCTGGAG	alt_3359_RC	4	5	6	5	11	8	7	5	7	3
GTTCATGCGGTCAGGT	alt_3359_RC	75	72	86	71	78	61	76	77	85	69
ATCCAAGCAAGATAGT	alt_3359_RC	496	540	566	486	480	425	594	342	549	398
ATATGTTTCGTCACTG	alt_3359_RC	30	19	40	34	27	21	21	19	39	19
TATATGGGTTTTCTTC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GCCTGGGACTTTCTGC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
AACGTCATTTAGTTGG	alt_3359_RC	5	11	14	11	5	6	15	11	11	10
TACTCTGCTTGCCTCG	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GGTTAAGTATATGCTC	alt_3359_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTAGATTATTGG	alt_3359_RC	1	1	2	2	3	0	0	1	0	2
GAGTAAGTTGGTTGCT	alt_3359_RC	0	4	1	4	2	7	5	2	4	3
ACAACTGGACCACATT	ref_6050_new	6	12	8	3	4	4	16	3	9	0
ATAATACAGTTTCCTG	ref_6050_new	10	15	12	15	12	15	15	11	19	9
AATATATACTCGGCTC	ref_6050_new	32	51	52	32	49	44	49	30	50	29
TTTAGTTATCTATTAT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
GTGTCGGGTTTAGAAT	ref_6050_new	0	0	0	0	1	0	0	0	0	0
TTCTTTCGCTTCGTAA	ref_6050_new	17	33	20	12	27	12	26	12	29	10
GCGTGTTATAGGGTAA	ref_6050_new	17	30	11	15	22	13	25	23	23	11
CATATCCTTGGGACCC	ref_6050_new	39	52	47	34	65	41	58	30	45	39
TTAGCACTGATCATGA	ref_6050_new	0	0	0	0	0	0	0	0	0	0
TGGCGCCCACGGCACT	ref_6050_new	2	1	8	2	1	4	4	4	6	2
TTGTGTAACGCCCGAG	ref_6050_new	6	4	4	11	4	9	4	2	7	5
TGCCATTAATGATCAG	ref_6050_new	39	55	40	35	68	37	83	43	69	32
TAGTGTTGCTTCTCTT	ref_6050_new	3	8	2	6	7	4	4	4	2	1
GATCTCCTGCTTCCTA	ref_6050_new	11	9	5	5	11	6	4	8	8	6
GCCACTCTGTGGTACT	ref_6050_new	11	15	16	12	21	14	17	17	20	11
CTGAGTTTAGAGAAAT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
TGTTCCTCTGGAGGCT	ref_6050_new	11	18	17	9	22	10	19	17	28	14
AGGTGTCCGTGTACGC	ref_6050_new	16	25	17	4	15	12	23	9	31	12
AGGACGCGGTCCAAGT	ref_6050_new	99	119	127	87	109	83	124	74	155	108
CGTTTTTTGGTGCTCC	ref_6050_new	25	47	42	31	56	33	49	22	58	23
GCGCCATCTTCCAGGT	ref_6050_new	25	20	18	25	19	26	23	4	22	20
TGCCCAAGTGTAACTA	ref_6050_new	1	1	3	2	2	0	4	4	5	1
TGTCTAAAGCTCACTC	ref_6050_new	4	15	7	1	10	5	5	4	4	4
ATCAATAACCGTACTA	ref_6050_new	41	74	56	44	75	61	77	44	80	41
TCATTTTTTTTTAAGT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CATGACCCAGCATGTT	ref_6050_new	5	15	11	8	16	11	11	7	17	6
TCGTTTTACTCACATT	ref_6050_new	45	108	48	45	95	43	95	44	118	43
CCTACCAGTGCGGTAC	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CTTGTTTAAACTTCCA	ref_6050_new	0	0	0	0	0	0	0	0	0	0
GAAGTGGCACAGTACA	ref_6050_new	3	1	2	1	1	1	4	0	1	0
AACCGCCACCAGAACA	ref_6050_new	64	95	59	47	76	51	101	52	90	44
TTTCACGAGGATTTAG	ref_6050_new	0	0	0	0	0	0	0	0	0	0
TTCGGGGTGATTCACA	ref_6050_new	0	0	0	0	0	0	0	0	0	0
AATTTATCTTAGCTGG	ref_6050_new	62	111	66	65	107	74	120	62	104	51
TGTGTCTTCGCTCTCC	ref_6050_new	0	0	0	0	0	0	0	0	0	0
TAGTCCCACTTCGGGC	ref_6050_new	87	141	101	88	156	82	162	85	179	76
CACCAATTGTGACTCA	ref_6050_new	21	52	32	32	46	23	45	29	48	30
TGCGGTGAGTGTATCA	ref_6050_new	54	70	68	53	91	54	95	50	72	43
GGCAAACTTTCGTTAC	ref_6050_new	5	2	2	3	8	2	6	2	8	1
TAGTATGTTTATGGGA	ref_6050_new	0	0	0	0	0	0	0	0	0	0
AGACTCAGTACCTTTA	ref_6050_new	8	15	11	4	14	12	22	13	15	8
GCACTCGTACCGGATT	ref_6050_new	2	6	9	6	9	4	9	7	6	3
GCAATCGTCTCGTAAG	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CTCAAGCGTAAGCGCC	ref_6050_new	0	0	0	0	0	0	0	0	0	0
GTAGACGACTTTTGGT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
TCTAGCACTGTATGTT	ref_6050_new	16	53	33	25	49	28	51	33	47	20
ATATAAACTAAGGAGA	ref_6050_new	0	0	0	0	0	0	0	0	0	0
ACGCCCGGTGTTCATG	ref_6050_new	48	75	49	40	78	40	65	48	85	35
ACTTATAAGTATCTTA	ref_6050_new	17	29	26	30	27	24	34	22	37	20
CTGGCGAGCTTCTAAT	ref_6050_new	32	51	26	32	44	33	53	30	32	48
TAGTCCGTCTCATTAG	ref_6050_new	19	19	17	21	26	9	20	4	24	18
GTGGGATTTAGGCGAG	ref_6050_new	11	14	17	8	31	14	12	6	15	8
ACTCTTGTTCGTATCA	ref_6050_new	19	18	7	7	17	16	18	10	20	6
ACGCTGACGGACCCCT	ref_6050_new	23	30	23	12	35	21	17	21	40	19
TCGTTAAGTAAGTGAC	ref_6050_new	8	21	21	14	19	8	14	10	22	4
GGGTTCACTGCTTGCG	ref_6050_new	26	30	30	19	41	25	40	19	28	24
GAGATTGCTGATCGCC	ref_6050_new	0	0	0	0	0	0	0	0	0	0
GGACAACACTCTGTAT	ref_6050_new	21	32	10	11	26	13	37	13	44	13
TCTATTTACGCAATCC	ref_6050_new	7	19	12	18	31	4	22	14	19	14
TTGATGTTTGTGTACC	alt_6050_new	22	29	34	18	25	25	27	36	38	19
GAGCACACCTCTAAAT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CTTCAACAGCTTACCT	ref_6050_new	9	21	7	3	32	9	22	7	38	4
TGTCCTAACACTTTTG	ref_6050_new	11	24	10	11	25	8	20	9	22	14
TTCGCACTGGGTGAAT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
GAACCTATCACTTGAG	ref_6050_new	2	0	1	2	0	0	1	0	0	0
ATAAGACTCTCTTTCC	alt_6050_new	242	393	368	245	346	235	382	210	356	245
CAACGGGGGTTTGCGA	ref_6050_new	126	235	173	124	241	138	199	150	236	122
CAAATAATATCAGGCC	ref_6050_new	39	37	31	23	44	33	26	28	40	26
GTAGTGATGCCGCCGG	ref_6050_new	58	92	93	52	97	65	104	61	95	42
GAGGGCTTTGCTGTTA	ref_6050_new	38	96	61	54	79	49	82	43	87	42
ATGGCTCTTCTACAAG	ref_6050_new	28	38	32	24	55	38	61	35	62	30
ACGCTGATAATATAGA	ref_6050_new	75	139	108	76	134	81	139	70	129	68
TAAGCACAGTTAATGG	ref_6050_new	14	22	17	10	20	9	21	12	25	18
TGGTCTTGGACCAGCA	ref_6050_new	41	76	47	34	48	40	60	47	80	34
AACACTTTATCCTTCT	ref_6050_new	11	22	29	20	21	13	24	19	26	20
TTAGATTTTAGTCTCT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CCCTCTTGTGGATCTT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CTACACGTTGTAGTAC	ref_6050_new	32	46	24	13	33	31	59	19	44	14
ATTCATACCTCTGTTG	ref_6050_new	14	25	11	13	27	12	16	5	19	11
AACCATTTTTTAACTG	ref_6050_new	0	0	0	0	0	0	0	0	0	0
ATCATCGTGACATAGG	ref_6050_new	10	16	8	7	19	5	20	4	10	4
TCGTTTTTCGCCCATT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
GGATTGTAACTCGCAC	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CTCTCAGCCGTTCCCC	ref_6050_new	5	29	5	10	23	9	25	9	22	5
GCTCCAACGGACGTCA	ref_6050_new	1	4	3	3	6	3	0	1	2	2
ATCACTTCCACCCACT	ref_6050_new	0	0	0	0	0	0	0	0	0	0
TAAGCAGCAATCGAAC	ref_6050_new	27	43	29	31	48	15	45	24	37	21
CTGTCGGGGCCAGTTC	ref_6050_new	31	47	44	26	44	29	55	29	54	27
TTTTATTTGCGCTAGA	ref_6050_new	0	0	0	0	0	0	0	0	0	0
CGGGCCCCTTACTATT	ref_6050_new	11	42	20	14	48	23	51	10	54	7
GGTCCTCATAGGCCAG	ref_6050_new	44	58	43	37	63	24	64	36	66	47
CGTATGTCAGTTTCCG	ref_6050_new	17	34	27	20	30	29	21	10	26	23
CCGACTGGCAGACTAG	ref_6050_new	4	18	14	7	4	7	9	4	7	3
CGCTGTTCCAGTCGTC	ref_6050_new	40	43	48	32	81	38	54	43	66	39
CGTATAAAGTCTTGCT	ref_6050_new	178	332	185	174	315	163	335	159	364	157
TAATGTGGCTCCGGCC	ref_6050_new	25	49	40	41	50	32	46	38	48	30
TCAGTGGTCGAAATCC	ref_6050_new	8	6	8	8	15	5	16	5	15	6
TCTCTTCTTTCATTCG	ref_6050_new	61	70	63	56	61	56	67	46	67	43
ATTGCTTGTCCTGCTT	alt_3951_RC	8	6	16	7	11	6	10	13	14	5
TCCGCCTCCTTCTCTA	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TTTTTATTTGTCTCCG	alt_3951_RC	149	143	180	134	137	135	125	131	154	121
TTGTGCACTCATCTGA	alt_3951_RC	44	69	56	35	58	40	77	51	64	33
ATTCAAAAGGATGTAG	alt_3951_RC	121	139	198	131	141	144	145	118	178	133
CGCATATCAAAATTGT	alt_3951_RC	169	216	194	132	209	167	229	147	248	137
ACTTGAACGGGCTGAC	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GGAGCAGTAAGTTGCA	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTAATCATTTGA	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TGCCTGTGTGCATATG	alt_3951_RC	50	68	51	52	90	41	88	41	82	47
CGGCAGGTTCCTAACC	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TAAATTTTTCTATTCG	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TGTATAACGGCCCCTA	alt_3951_RC	29	21	34	36	44	37	42	37	29	21
AGGCAAGCATTAGTGG	alt_3951_RC	95	116	105	98	94	96	104	89	136	91
AGGCGGCGGAACGTCA	alt_3951_RC	102	91	86	90	99	89	98	67	99	78
GTTTGGCTGGACATTA	alt_3951_RC	26	37	31	20	29	33	32	36	36	22
GGGTACCGCTAGATTT	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GTCGCAGGAGACTCTT	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGTTGTTTAACA	alt_3951_RC	47	78	55	54	91	39	82	61	90	64
CCCGGCGAGGCACTTA	alt_3951_RC	4	11	2	2	8	5	14	3	12	2
TCTTACTCAACGTGTG	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
ACGACACGTTTACGGA	alt_3951_RC	115	141	135	129	128	110	131	104	166	102
ACATTGGAGTATGTTT	alt_3951_RC	1	0	0	0	0	0	0	0	0	0
TACTCCGGGGGAGGGC	alt_3951_RC	20	18	16	13	32	14	14	16	34	13
CTTTGGTTTGGGGCGT	alt_3951_RC	18	20	20	15	10	16	17	15	17	18
AGCTGGCCTCTGGTTG	alt_3951_RC	36	37	43	18	48	43	62	27	53	38
GTTTGCGGATGTAAGC	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GGCTATAACCTAAGGC	alt_3951_RC	23	47	33	36	44	34	36	43	39	20
TTACTAATTTTGTCCC	alt_3951_RC	220	162	271	205	209	194	212	202	198	174
TGGCTTTGGGCACCCG	alt_3951_RC	37	39	46	34	48	53	39	41	51	40
GGCTTAAGTCCTAGGC	alt_3951_RC	96	104	101	74	115	92	116	93	103	79
CCGAACAGTCTGCTTG	alt_3951_RC	17	21	17	23	23	25	24	17	20	16
CAGAAATGTCGGTTAT	alt_3951_RC	49	52	60	58	48	58	51	47	52	43
TGATTCTGCGTTTTGG	alt_3951_RC	46	62	50	42	43	35	66	48	61	46
CCGATCTGATAAATCT	alt_3951_RC	1	11	2	3	21	1	12	2	10	4
ACTCTTTTGCATTCGC	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TGCCCGGAATTTTCCG	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
ATTCCCCTTCTGCTGC	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TTTAGTGGTAATTGGG	alt_3951_RC	26	36	38	24	31	36	56	19	40	25
CCGTTTATCTGAGGAA	alt_3951_RC	53	59	73	52	50	55	53	53	70	43
ATGCCTATTTATACCT	alt_3951_RC	4	4	2	4	4	6	7	2	5	6
TGACGTCACATGAGGG	ref_3951_RC	67	77	96	78	53	74	75	73	93	61
TTTCCTTTGTAAGCTT	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TGCTCTACCGGTATAC	alt_3951_RC	30	37	45	31	27	35	38	18	49	29
CTTTCTGCCTACTTCA	alt_3951_RC	9	12	8	8	8	9	8	11	13	7
TTCAATTATCGTCTTG	alt_3951_RC	73	60	91	81	75	69	89	76	77	74
CCCAGGGCGTACGGTA	alt_3951_RC	6	19	9	12	6	6	15	5	14	5
AAGGGGGCCTTTATGG	alt_3951_RC	72	58	76	59	75	67	93	64	61	60
TCCAGGGTTGGTTGAT	alt_3951_RC	4	4	7	2	9	2	7	0	5	4
AAGTTTCATTGGACTA	alt_3951_RC	47	52	65	47	59	55	54	44	60	34
CAATGTCGATTAGGCT	alt_3951_RC	27	19	24	17	28	16	23	14	14	14
CACCCCTCGATCCATA	alt_3951_RC	14	102	24	25	77	17	86	19	78	13
GGTTGTACGAACTTTT	alt_3951_RC	8	16	12	7	12	4	16	9	10	5
AAGGCGGATACAGATG	alt_3951_RC	63	67	94	94	53	60	68	69	83	69
ACAACGAGTAACGTTA	alt_3951_RC	19	18	15	23	23	14	17	8	19	19
TAGTATGCCGAATCTT	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
CCTAGTGCTGTCAGTT	alt_3951_RC	19	21	20	13	21	11	26	11	26	9
ACAATGGAGTATGTTT	alt_3951_RC	180	139	207	181	152	160	177	153	177	158
ATTGCTGATAAATTAC	ref_3951_RC	28	24	26	25	29	26	29	20	36	24
AGTTAGTATTCTGTAA	alt_3951_RC	0	5	0	0	0	2	2	0	2	0
GACTTCTTTTGTGGAG	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GTTGCGATTTAGTGCT	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTTCGGTACTTG	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TACTGAGGATCACGTC	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TTTACCTACACGCAGC	alt_3951_RC	39	40	39	32	47	22	33	27	45	42
GCAATCACCGATATGG	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTGGTTGCAGGC	alt_3951_RC	2	4	6	5	3	7	5	10	9	10
TTTGTCCGTGCTCGCT	alt_3951_RC	18	14	26	19	24	14	17	16	33	16
GCGGCGAGGCAGCCAG	alt_3951_RC	37	41	43	39	38	53	47	30	53	39
AACTCATGTGAGACAC	alt_3951_RC	31	36	35	28	42	26	26	30	33	31
TGATCACCAGAATCCG	alt_3951_RC	39	45	46	49	53	44	44	31	60	36
GTAACTGGTAGGGTGC	alt_3951_RC	53	61	56	43	47	48	66	23	75	30
TTGAGTTACGGTATTA	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GCCCGTTTTCAGGAGA	alt_3951_RC	33	51	41	31	49	30	50	25	55	29
CGAGCAGGTTAAATCC	alt_3951_RC	18	19	20	16	19	26	20	20	31	16
AATAGTGTTCAATAGT	alt_3951_RC	14	6	9	13	18	12	25	6	16	12
CCTGGTTACCGTTGTT	ref_3951_RC	87	143	117	91	141	82	133	107	159	84
CTAGCGCGTGTTAGTG	alt_3951_RC	38	46	55	48	45	33	50	37	68	42
GTTTCCTAGTACTGCC	alt_3951_RC	16	56	23	31	57	18	51	19	54	20
CGCTATTGTCTGCGCA	alt_3951_RC	57	63	45	45	64	39	78	35	59	36
TGGTAGTTAAAAACAG	ref_3951_RC	55	68	80	58	73	72	79	55	90	50
CGTGCATTATGGAGTG	alt_3951_RC	30	37	50	43	54	41	54	52	40	30
TGATTTGAGAGGCCTT	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
TTATCACATCTCGCTA	alt_3951_RC	24	46	32	24	49	24	40	24	45	39
ACCGTCGTGGCGTGCC	alt_3951_RC	32	141	35	34	144	24	151	31	150	33
AGGAAGTGCGATATGA	alt_3951_RC	44	28	43	28	49	40	40	33	41	27
GGTTGGTGACACATAC	alt_3951_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCTTTCCTCAAC	alt_3951_RC	19	19	17	16	15	24	26	26	23	19
ATGTGGTCTTCTGATC	alt_3951_RC	15	25	19	18	29	29	14	14	29	21
CCACTGTCGGAGGTTG	alt_3951_RC	132	171	162	123	170	97	138	133	193	116
TTCCGAAACGATGGGT	alt_3951_RC	19	19	16	22	23	21	14	19	17	10
TAAGTTGTGTACTTAT	alt_3951_RC	9	13	6	16	16	6	16	5	17	13
CAGTGTGGGAGACGCA	alt_3951_RC	30	49	64	43	44	38	48	39	50	42
GTCAAACCCTCGTGCG	ref_5690_new	0	0	0	0	0	0	0	0	0	0
TCACGGAAAATGGACA	ref_5690_new	11	16	20	16	9	10	11	13	12	14
GGCGTCGAGTAGTGTG	ref_5690_new	12	17	17	16	10	15	16	11	19	7
CTATGCTGCCGGGCAT	ref_5690_new	35	44	33	26	30	21	37	17	39	14
TTCTTAAGCCGGGACC	ref_5690_new	0	0	0	0	0	0	0	0	0	0
GCTTTGGTAAGAAGGA	ref_5690_new	32	32	37	39	24	22	25	31	22	21
CCTGTTATGCTGCGCG	alt_5690_new	35	26	32	36	43	28	36	36	34	16
ATCAGTATTCGATGTT	ref_5690_new	16	8	4	4	8	9	13	13	9	7
TTCGGTCCGTGAGGGA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CTCTTGTGCGCATTGG	ref_5690_new	0	0	0	0	0	0	0	0	0	0
GCCTATCTCACCAAGT	ref_5690_new	41	55	54	47	63	40	52	32	50	31
CCGCGCCCTATTCTAT	alt_5690_new	76	254	128	120	254	107	261	102	289	89
AACTTTCTAGTCTTCC	ref_5690_new	50	33	30	29	29	29	34	33	43	33
CTGTTTTGTGATGCCT	ref_5690_new	46	43	41	55	71	37	47	43	47	44
TGTCAGCTTTCTTATT	ref_5690_new	35	32	58	42	27	34	32	29	34	30
CCTGGGTAGTTTGGCT	ref_5690_new	4	5	10	12	11	2	11	10	11	7
AATCATAGCTGCCTTA	ref_5690_new	37	50	63	59	46	54	53	32	52	55
TCGCGCGGCCGTTCCA	ref_5690_new	28	34	44	25	31	33	35	22	53	25
AAATAAATGCGGCCAA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
ACAGGCACTACAATCA	ref_5690_new	26	50	51	36	64	36	60	34	75	28
CCCTCCAAACAGGTTT	ref_5690_new	7	22	13	22	18	10	19	15	21	16
TACTTTAATATCTGCA	ref_5690_new	2	4	6	6	5	2	5	6	5	5
ACGCCTTCGATTTCTT	ref_5690_new	54	71	87	66	72	59	68	45	77	53
TGAAATTCTCTGTCTT	ref_5690_new	22	28	22	36	18	21	27	19	28	35
CACATCGTCGTAAGCC	ref_5690_new	48	87	68	66	97	68	77	49	82	51
CCTTGTATCTGGTGGT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
AGTACTTTTTGTCCGC	ref_5690_new	0	0	0	0	0	0	0	0	0	0
TTCCGATTCTCACGGT	ref_5690_new	14	5	16	9	9	12	16	9	14	8
GGTAGATGTCGAACCG	ref_5690_new	69	58	76	74	68	53	56	57	69	55
TGTATACACTATCTTT	ref_5690_new	77	81	93	70	66	95	96	59	87	67
CCTCGTATGATGGATA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CTGAGCAGATTATAAC	ref_5690_new	12	21	23	11	8	22	10	12	22	15
GAACAGCATGGAAATT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
TCTCTGCTTCCAGCAG	ref_5690_new	0	0	0	0	0	0	0	0	0	0
GTTAACGCCAGTTGAC	ref_5690_new	47	41	56	40	50	41	55	43	69	43
CTCGGAACACCTAGTG	ref_5690_new	19	36	24	17	29	13	25	18	21	14
ACACCGGTACAGACTG	ref_5690_new	10	23	11	16	26	10	36	14	32	13
ACTTGCGCCGGGCGGT	ref_5690_new	39	41	51	68	55	44	59	47	51	47
CCGCTTCAGTGTGTCT	ref_5690_new	1	12	6	2	13	1	14	1	15	0
TCCCGATAGCCCTCAG	ref_5690_new	32	63	49	48	52	52	72	38	54	33
ACATATGGGCTCAAAG	ref_5690_new	61	68	59	77	64	48	60	80	70	54
CGATGATATTAGTTGT	ref_5690_new	29	43	48	50	33	41	63	52	47	33
TGTAGTTGCCGGCTCT	ref_5690_new	30	31	33	40	34	38	42	34	34	29
TCTCAGCGTTAGCGCC	ref_5690_new	0	0	0	0	0	0	0	0	0	0
GTTTCTGCCTAGGGTA	alt_5690_new	85	141	94	109	131	88	170	99	159	82
TTCGAGGCGACAGTTG	ref_5690_new	6	10	11	16	15	12	5	4	10	15
CGCGGTAGTTTGGTTC	ref_5690_new	2	1	9	3	1	4	8	2	6	3
ATGAACCTTATCCACT	ref_5690_new	4	5	9	4	10	3	5	5	4	2
TTTGCGTCTGACGGAA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CATACATCCTGACCCG	ref_5690_new	7	11	3	5	7	8	15	9	8	5
TTTCAGAATGGCGCGC	ref_5690_new	0	0	0	0	0	0	0	0	0	0
GTTCTCAACCCGTTTT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CTCGTTGTTTGCTTCA	ref_5690_new	38	45	44	60	58	46	42	41	43	37
AACATGGATATAACAC	ref_5690_new	0	0	0	0	0	0	0	0	0	0
GGTCTTTGCTCTTTTT	ref_5690_new	47	53	60	65	56	47	48	59	53	52
TTGACGCGCCAATGTG	ref_5690_new	11	15	13	5	3	7	11	5	17	4
GCCGGAAGCAAGGCCC	ref_5690_new	16	7	11	10	10	13	8	8	13	14
GGGTCCGTAATCTTCT	ref_5690_new	127	163	183	138	146	150	136	133	163	136
CATCGTTTCCGCCGGA	ref_5690_new	21	19	31	21	20	28	31	23	8	9
CATGCTGTTGACTTCG	ref_5690_new	328	420	384	337	373	316	354	312	367	318
TCTCTCGTTATCGTCA	ref_5690_new	30	35	36	22	24	44	31	37	25	23
CGGCTAGTGACTTCTC	ref_5690_new	86	60	99	98	69	58	85	74	95	73
GGCGCAATCTGGATGG	alt_5690_new	19	19	32	15	28	22	32	25	19	22
GTGGCTCTCTTTCTAT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
TCTCTTCCGCGACCAG	ref_5690_new	15	11	11	13	16	14	10	22	18	20
TCTATCGACTACAACG	ref_5690_new	30	55	44	26	35	36	30	32	30	36
CATTAGTCGGGTTTCC	ref_5690_new	0	0	0	0	0	0	0	0	0	0
GAGCGTTCCACCTTCG	ref_5690_new	3	2	4	2	7	2	1	4	0	0
TATCGTCCACGGCTCG	ref_5690_new	59	65	88	68	56	65	66	59	64	74
TTATTAGTTAAGTTCC	ref_5690_new	23	25	31	19	23	20	29	12	38	15
TTTACGTGGGGCGCGT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
ATTAAGATCAGACCTG	ref_5690_new	78	91	127	103	119	81	97	89	103	83
CCTACCCAACAGCGGC	ref_5690_new	20	35	38	42	52	33	51	24	41	23
TGCGTACATGCGACTA	ref_5690_new	27	38	37	40	35	28	53	42	32	32
CATAGTTCGCTTCGAA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
TGGACCTCTCTGCCCA	ref_5690_new	30	26	25	24	34	23	32	26	36	27
TCCTAGAAGTACCATA	ref_5690_new	13	4	2	4	3	5	9	6	7	5
ACCTAGCACCGATCTG	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CGATGCGGTGGATCTA	ref_5690_new	9	14	10	3	5	3	7	2	2	6
ATATAATCGGGATGCA	ref_5690_new	50	47	56	47	58	58	52	43	64	38
GGATGCCAAGTCGGGG	ref_5690_new	14	13	31	20	21	15	17	19	14	15
GCTCAGTTCTTGCAAG	ref_5690_new	79	79	63	47	67	59	77	52	100	51
GAATCTCCGCTTCATT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
ATTGTGCTAGCCTGTT	ref_5690_new	5	13	7	15	9	5	10	8	13	8
ATGCTGATTGCTGGTT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
ATTGCACGCCCTGCCT	ref_5690_new	57	42	59	35	72	37	49	46	72	36
CTTAGTAACGGGCCTA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CGGTTTGTAGCTAAGC	ref_5690_new	30	73	37	30	62	27	69	18	67	23
CTGTTCCTTCAATTCA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CAATTAAGACTTGAGA	ref_5690_new	26	33	42	33	53	30	53	25	37	29
ATCTGAATTCTGCGAA	ref_5690_new	15	10	17	11	9	7	10	11	15	10
CCTGTTTGGCTAGACC	ref_5690_new	100	100	100	79	93	87	97	81	90	68
CGGACTTAGGTATCAG	ref_5690_new	0	1	1	0	2	0	2	0	0	0
GTTACTGGTCAGGAGC	ref_5690_new	54	34	54	42	41	40	52	40	61	41
AGATACATGATATCAT	ref_5690_new	6	3	9	5	12	8	5	12	11	8
TAGTTCCTCCGGCAAT	ref_5690_new	48	52	76	62	71	45	62	83	63	68
TGTACTCACCTAGCCT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
CACGGTGGTGGAATCG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
AATAATGATTCAATTC	ref_5690_new	2	6	15	7	10	9	7	8	6	5
ATCAAGGGGGTCTAAA	ref_5690_new	4	4	5	8	8	8	10	5	3	6
TTCAAGGTGTCTGCCT	ref_5690_new	51	40	59	46	49	38	50	40	55	47
TCCCAAATAATGCCAC	ref_5690_new	37	33	39	33	23	18	38	32	42	27
CCTTACTCACGCCCTG	ref_5690_new	72	63	120	79	72	60	79	75	106	63
TTTTCCATATGTCCAG	ref_5690_new	0	0	0	0	0	0	0	0	0	0
AGCGGCAGAGCTCCTC	ref_5690_new	0	0	0	0	0	0	0	0	0	0
ACTAACCACTGGGTCT	ref_5690_new	0	0	0	0	0	0	0	0	0	0
TCTAACACACCCGATC	ref_5690_new	1	2	0	2	2	2	4	1	4	2
GAAATACGTACTTTTA	ref_5690_new	10	13	10	5	6	8	13	5	11	5
CAAGTCATGACCTATA	ref_5690_new	0	0	0	0	0	0	0	0	0	0
TCGCAAGTAGGTTTCA	ref_5690_new	16	19	19	22	15	13	31	10	18	19
ACTCTTCTTCTTGTTG	ref_4170_RC	27	17	35	27	20	40	22	37	27	28
ATCCGGCAGTACCTGA	ref_4170_RC	0	0	0	0	0	3	0	1	3	0
TATTAAAATCACGATG	ref_4170_RC	40	32	38	35	22	35	28	27	23	24
CTGACGAAGGTCACGC	ref_4170_RC	69	45	62	72	49	52	34	76	38	43
GGATTCTAAGCATGCT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TTCCCCATTTCGCGAC	ref_4170_RC	33	31	44	38	31	40	31	37	37	43
ATGCAGTTCGTGTTAC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GGATGGGATGGAATTA	ref_4170_RC	13	10	12	12	13	16	14	12	15	13
CACGGGAGCATGGTAA	ref_4170_RC	24	8	25	19	23	25	13	17	17	17
CTAGCAGTCCCTACCG	ref_4170_RC	8	13	18	13	15	14	12	10	7	10
CAAGTACTTCTATTCT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GCGGTGGCTAACCCAT	ref_4170_RC	31	25	37	46	31	28	31	28	29	37
GCCGGTGTTTGAATTG	ref_4170_RC	16	16	34	25	26	16	20	36	23	24
TCTTACCTTCATTGGC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TCTCACTGTATGTTGA	ref_4170_RC	14	18	38	25	13	30	18	22	12	25
GCGGGGAGCTCAGGAC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TGGTACGTATCGTCTA	ref_4170_RC	64	36	82	84	52	51	56	60	46	75
AATCATTTACCACATA	ref_4170_RC	117	99	150	139	80	128	102	97	72	106
TCCTGCCTTTGTTTAC	ref_4170_RC	32	15	31	44	19	16	14	30	26	26
CAGTAAGTTATTTCGG	ref_4170_RC	248	231	326	268	211	271	195	299	207	240
GGGACCGTAGAGCAAA	ref_4170_RC	25	7	27	22	13	33	23	17	26	26
GTCAAAGATACGTGTA	ref_4170_RC	43	28	41	29	44	30	32	38	32	39
AATAAGGAGAGTCAAG	ref_4170_RC	197	113	214	226	123	229	137	192	125	167
GTTTGGATCTCGTGAA	ref_4170_RC	74	51	89	90	46	73	55	73	37	84
CGATTTGCCACATTTC	ref_4170_RC	223	153	238	239	178	216	162	215	176	211
ACTTATAAGTTAAACT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CCACAAGTAAACATAT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CGAACAGTGGCTATAG	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GCAGGGGGGATTACAT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
ACGTATCCCTAATTGG	ref_4170_RC	6	3	16	8	6	10	13	11	5	4
GCGTACTCTTCACCGG	ref_4170_RC	17	3	22	25	14	18	10	13	12	11
TCTTGCCATTTTTCCA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CAGGTTTATGAAGCCT	ref_4170_RC	30	13	28	22	19	25	15	32	13	16
ATACTTCGCATCGGTC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TGCCGTGTCGTTCTAG	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GACCGGGTTCCGTCTC	ref_4170_RC	12	8	27	19	10	20	10	14	10	14
TCGGTTGACTACGCCT	ref_4170_RC	1	1	3	1	4	2	3	3	0	5
AAATGGAGATTACTGC	ref_4170_RC	53	22	70	51	20	51	28	47	29	43
ACAGTTACGATGATCT	ref_4170_RC	44	31	68	75	43	45	49	54	45	62
TTAGTCCGTCTGTCCG	ref_4170_RC	168	120	239	217	150	188	108	172	142	186
CAAATCTGAGAGATTT	ref_4170_RC	22	19	29	19	19	21	14	25	16	29
GCGCTTATCGGTTCGG	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TTTCATTGGTCATATT	ref_4170_RC	101	60	104	106	69	122	71	93	71	98
GGATTTCAAGCGCCCT	ref_4170_RC	37	21	37	42	20	32	31	26	30	35
GACTCTCATTCCATTA	ref_4170_RC	24	8	23	18	12	12	7	10	24	18
TTAGGGACCGCTCCTC	ref_4170_RC	9	9	10	14	10	3	4	13	8	14
TCCTAGGGGATTATCG	ref_4170_RC	155	86	213	176	89	188	116	133	116	156
CAACACCGTGGACATG	ref_4170_RC	110	82	119	92	63	106	64	93	56	84
AAATCCCTCTCTATCA	ref_4170_RC	4	2	2	1	1	2	0	3	4	1
TGCTAAGTCCCTTTCA	alt_4170_RC	14	14	19	19	20	15	9	16	8	13
CTTTGTTTCGTATAGG	ref_4170_RC	52	37	56	49	37	47	28	53	36	55
TCCCACGGAATATCAG	ref_4170_RC	55	42	66	74	34	56	38	70	55	52
GGTCTTGGGATCATGC	ref_4170_RC	115	88	137	115	96	96	105	96	111	104
CTACATGGTCAGTATC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CGGTGCTACTTTTACT	ref_4170_RC	22	22	18	26	17	13	17	22	22	31
TCATTAGCATATTCAC	ref_4170_RC	119	79	122	90	66	97	59	89	91	101
CTCACTGGTTGGTAAC	ref_4170_RC	76	34	86	55	39	51	42	66	41	55
CTTCTTATTTTTCTCC	ref_4170_RC	12	12	29	20	9	21	18	16	17	21
GACTCGACTCGCGCAT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GGACCATTCTTGCGAG	ref_4170_RC	4	10	12	9	11	9	5	14	8	9
TCTCTCGGCAACAATA	ref_4170_RC	78	47	111	98	58	102	61	96	54	92
TTATTGGCCCCCTTCC	ref_4170_RC	112	57	149	113	68	127	57	94	74	108
ATCCGCACTGGGTCGT	ref_4170_RC	19	13	23	23	27	27	18	42	20	24
TTTTCCTCCATCAGCT	ref_4170_RC	80	37	73	47	45	46	46	62	50	63
CCTGCATCCAGTCCTG	ref_4170_RC	83	50	103	80	53	73	67	77	62	72
TTATGCTGCACCGTAC	ref_4170_RC	51	60	70	61	37	57	55	55	42	63
ATAACCAGTCTTCATA	ref_4170_RC	106	81	100	92	63	78	79	67	68	69
ACACACTCAATGAGAT	ref_4170_RC	63	43	74	63	48	56	47	58	33	54
GTGGTTTAATCATTTG	ref_4170_RC	150	73	128	133	83	119	90	137	72	106
TGGTTGTGAGTCACTA	ref_4170_RC	20	26	50	27	30	22	19	33	19	30
CGTCATTAAGTCGTGA	ref_4170_RC	35	15	29	36	30	35	26	37	28	26
TTCATTAACCCGCCAT	ref_4170_RC	8	3	17	17	3	11	3	6	5	9
CTCTAAAACATCCACG	ref_4170_RC	6	9	9	12	11	10	11	6	8	8
TTTGCGTTTAATGCTT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
ATAGTCAGAGGCGTAG	ref_4170_RC	5	5	10	7	6	9	9	8	5	9
CACCAGGTCACGGAAT	ref_4170_RC	14	18	17	18	19	8	18	9	15	20
CGATCCTTCTAAATGG	ref_4170_RC	71	31	91	67	38	92	35	70	41	72
CCTAGTACTAGATGTC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CTACACCCGCATCGGA	ref_4170_RC	33	18	43	33	29	29	24	30	32	40
ATGTACGGAATTGCAT	ref_4170_RC	130	79	211	175	130	142	116	127	110	104
AAGTAGACGCTGTGTT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CCGGCAAGCCCGATCA	ref_4170_RC	17	18	30	26	20	23	12	21	16	18
CGGATGGCCTTTGTGA	ref_4170_RC	86	77	134	111	70	79	81	87	52	91
TGACAAAAGTCCTCCT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TAACGGTGGTCTCACG	ref_4170_RC	55	27	65	50	15	49	25	34	25	39
CTTAATCTCAATGTCA	ref_4170_RC	114	80	154	109	79	120	99	113	105	107
CGGGCATGGCTGCTTC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTAAAATCTGTA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CGGTTTACCGGTCACG	ref_4170_RC	14	11	17	10	8	12	11	14	5	20
TAGGATCTTATGTATA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CCGTTAAGGTATAATT	ref_4170_RC	218	137	254	217	154	189	132	190	136	182
CCAGCCTTGGGTACAT	ref_4170_RC	0	3	0	1	8	1	7	1	12	2
GATTTCCTTGCTCTTG	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
ACCCTTCGGGCGGTAT	ref_4170_RC	21	9	33	17	17	13	11	21	13	15
ATTTCATAGCGAACGA	ref_4170_RC	40	26	60	33	31	32	21	42	28	31
GTACGCTTCCGTAATT	ref_4170_RC	60	48	71	56	52	61	36	57	32	43
TCTCGCCACTCCGGCG	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CGTCAGCTTTCCCTTG	ref_4170_RC	28	33	41	47	37	32	16	39	26	39
TTACTCCTTTGGGTGT	ref_4170_RC	46	41	43	31	59	41	49	40	55	29
GCCGTGGCTAACCGCA	ref_4170_RC	10	4	14	5	0	6	9	7	9	9
GTTCCGTTTCCGATAA	ref_4170_RC	13	12	21	17	10	13	13	20	14	21
TGGGACACTTGGTAGG	ref_4170_RC	111	88	154	132	101	106	126	124	109	91
CCTGCGGTTTATACAC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CAGCCTGAGCGGCCCT	alt_4170_RC	103	90	118	119	89	93	101	110	99	83
GCCTTTTGTGCACCGA	ref_4170_RC	302	181	297	284	201	262	215	291	237	297
CCGACTCAGTTCAAGT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CGTTTCAGAATCTAGA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
ACCGGTAGCGTCATCT	ref_4170_RC	5	1	8	8	4	3	4	2	6	2
CTCCGGTTTGTGTTGG	ref_4170_RC	19	9	15	16	11	9	4	9	11	11
ACGGCGAAATGAGGGA	ref_4170_RC	56	26	54	43	35	45	28	37	17	40
CTCCTCAGAATGACTA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GTTTTCGCGCCTGTTA	ref_4170_RC	148	95	160	147	93	138	100	127	101	110
GGGAGCTCCAGCAGAT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TGGCGCCATTAGAAGA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
ATGAAGCTCTTTCATG	ref_4170_RC	148	94	209	187	119	145	135	150	131	147
TTGCATGTTGTGCGAT	ref_4170_RC	33	22	37	35	24	36	26	24	20	36
CGTTTGTTATAGGTTC	ref_4170_RC	38	24	55	38	33	34	27	32	41	35
AACTTGACGGGGCTCA	ref_4170_RC	58	39	42	64	30	63	31	63	35	61
GTGGCTTCAATTGGTG	ref_4170_RC	103	82	114	131	63	110	72	119	87	85
GGGGGGCATTAGGATT	ref_4170_RC	70	51	70	67	44	70	54	68	52	59
TCCTGATTTGTGTCGG	ref_4170_RC	32	22	51	39	31	32	25	26	19	38
AGTACCGTCATGAAAA	ref_4170_RC	51	23	49	45	31	41	23	36	30	48
CCCGAATTCAAATGTA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGGTTTGGTGTA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CTTAACAGCCCGGTTC	ref_4170_RC	25	28	31	41	23	23	18	26	21	37
GGTACCGGATCACTAA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GGGAGGTGTGATTAGT	ref_4170_RC	14	15	24	20	19	17	18	18	17	18
ATTGTTTGAGGTAAGA	ref_4170_RC	113	76	111	113	78	128	94	102	62	98
TTCTCGGTGATTTCAT	ref_4170_RC	24	16	55	25	11	42	20	32	23	29
TTTGAGCCAGCATGAG	ref_4170_RC	53	32	47	56	24	38	28	42	45	31
TATCCAGGACAGACTA	ref_4170_RC	5	1	10	8	7	14	2	4	3	3
ACAATTCTTGGCGAAA	ref_4170_RC	31	13	27	23	21	20	21	28	16	21
GCGACTGGGTACCCGA	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GACCGTACACAGCCCA	ref_4170_RC	9	3	8	6	4	5	2	9	4	8
ACTTCGTAGTGTGGCC	ref_4170_RC	38	29	68	52	22	38	27	41	22	37
CGTTTTTCGTTTTGCA	ref_4170_RC	60	43	62	54	47	56	36	39	42	50
TGTGTATAAGGACGGG	ref_4170_RC	68	56	92	69	52	64	53	78	40	55
CGCTTGGTACAGCGTT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GCCAACGCCACTACGC	ref_4170_RC	59	61	76	65	41	61	59	61	40	65
TTACGTTGACTTCTAT	ref_4170_RC	3	4	10	7	4	4	3	4	5	2
CATGCAACGCAACTTG	ref_4170_RC	23	22	29	28	13	28	22	23	13	28
TATTTTTCCCCAAAAT	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
GTCTGAAAGGCCAGTT	ref_4170_RC	1	5	3	3	6	6	2	7	0	3
ACTATTCTTTTGGCCA	alt_4170_RC	71	57	96	55	71	68	49	87	79	79
GTCAAATCGGTATCCT	ref_4170_RC	23	13	23	12	6	17	9	26	16	22
CCAGGACTTAGGGTAC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
CTCGACGTGGCACCGC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
ACGCTTCGTCCCCCCA	ref_4170_RC	88	49	124	97	66	79	61	87	54	85
CGATTCGTAAAGCGTC	ref_4170_RC	121	116	168	137	102	112	96	128	96	146
CGTCTCGGTCATGGTC	ref_4170_RC	23	16	17	20	8	13	9	17	24	19
CATTAAAGGTTGATAT	ref_4170_RC	32	25	35	30	22	23	30	36	24	36
ACGCCTATCTGTCAGG	ref_4170_RC	5	16	4	3	5	3	14	1	17	8
CCTTCTCGGTATTCGT	ref_4170_RC	1	5	4	2	1	2	0	3	3	1
AGATGTTGTGCGCACA	ref_4170_RC	52	30	32	31	40	41	38	30	29	36
TTTGGGGGTTAGTCTG	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
TGTGCTTGTGTCCTAT	ref_4170_RC	36	40	52	34	32	38	44	43	38	24
TCCATACCTGCTGGGC	ref_4170_RC	0	0	0	0	0	0	0	0	0	0
ATGGACATCCCCTCGA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TCAGCTCATAACCTAA	alt_6085_new	10	15	8	7	16	6	9	5	14	8
TGTTGGCATTTCTGGC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
GATCAAGCACTTGCAT	alt_6085_new	12	12	7	8	3	15	16	6	10	11
ATGCTGCCTATGGTTA	alt_6085_new	35	36	47	21	52	30	52	35	42	28
CCAGAAATTTTGTATT	alt_6085_new	25	30	33	19	29	14	50	22	31	11
GTTTTTGGGCACCTGC	alt_6085_new	35	78	67	45	77	53	70	49	108	58
TGCTAATCCGACTCTG	alt_6085_new	34	48	45	39	47	44	39	31	59	43
TCGCGCGGTACATTTC	alt_6085_new	17	50	25	32	52	22	55	22	70	19
TCCTTTTACAAAGTGC	alt_6085_new	2	4	1	2	6	0	1	5	6	2
TCTGCTCAACCCGGAA	alt_6085_new	55	53	60	52	51	49	41	48	36	36
ACGTTAGTATGCAAGT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
GTGTCAGGATGTTGCG	alt_6085_new	7	8	10	5	3	8	16	6	9	6
TGTCGCTTTGTATCAC	alt_6085_new	28	32	49	34	33	35	45	39	40	19
CTCTCTCTACTAATTA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TAATTAAAGATACGTG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TGAGACTAACTCGTTT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ATTTTAAAGCTATCAT	alt_6085_new	100	108	134	148	109	105	163	111	132	115
GCAGATAGAGTTCTGT	alt_6085_new	37	26	42	29	30	26	31	30	39	25
TCGGTTTCTCGTACGG	alt_6085_new	24	25	18	23	20	24	36	23	30	19
CTTCTGCGTCCGATGC	alt_6085_new	69	94	127	91	78	78	104	69	109	62
TAGTCAGGATTGTTGG	alt_6085_new	6	6	1	8	15	6	5	9	12	7
ATGATTGCGTCCGTTG	alt_6085_new	15	13	13	10	22	11	37	15	22	20
CTATGTTACATCCTTT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CTAAAGCCATTCCCGG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TTAATTTTCTCGAGCG	alt_6085_new	1	3	3	7	6	4	3	1	7	2
TATGATGTCGCTAAGT	alt_6085_new	51	47	55	37	55	40	49	42	41	39
TGAGCAATTAATCTAT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CGTTGACAGGGATCGT	alt_6085_new	21	25	16	21	28	14	20	14	29	16
GTCTGGATAGTTTCTT	alt_6085_new	42	35	40	34	35	26	49	30	46	26
TGATGGGGGTACCTGT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TGTTCTGGGACATCCA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ATTACTCTTCCCACAA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
GGTCCAACCTTCGTAA	alt_6085_new	15	15	10	7	12	8	10	5	9	7
TTGCGTTCTGCTGATG	alt_6085_new	101	167	128	91	189	108	195	111	157	116
TTTTCTTGTTAGCAAT	alt_6085_new	76	85	74	59	69	80	97	50	108	65
CTGGTAATTTCGCTTC	alt_6085_new	23	29	33	28	26	24	26	19	31	23
TCCTTGATCATTTCAT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CCGGTGTGCGTCCCAA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CTTGCTATTAGGCCGG	alt_6085_new	22	25	23	17	22	28	31	14	18	18
TTGTTTCTTTGGACTT	alt_6085_new	11	15	21	17	17	24	18	11	16	11
CCTTTCCCTAATTTAC	alt_6085_new	13	20	11	20	14	21	21	15	15	14
ACTCTCCGCTTATCAG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
AGTGGGAGCCAATCGT	alt_6085_new	1	6	6	4	8	9	7	3	4	3
TTCAGAAGACTCATAT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ACCCGCACGCCTGGGA	ref_6085_new	46	71	75	46	61	52	61	39	94	70
TTAAGGCAGTGATTTT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
AATGCGTAAACCGTGA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TCTGTCTATCCTTTAA	alt_6085_new	12	17	20	9	24	16	21	22	13	9
GTCGTACACGTTAGAG	alt_6085_new	3	4	6	3	5	1	6	5	8	6
TGTCCTAGAACCTGTT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CTTTTTAACTTTCGGG	alt_6085_new	30	23	41	25	24	29	36	24	30	26
TTGGCGCACCCTTGTC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TTTCTTGTCTCCCTCC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TTATTGGGATATCGCG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TACGTGGACAAAGGCG	alt_6085_new	47	63	58	46	66	50	49	45	54	37
TCCCGACGTCCGCATA	alt_6085_new	44	46	46	44	62	30	48	35	46	29
GCCATGCCTTAGGGTG	alt_6085_new	23	30	18	16	41	16	39	19	39	18
ACAGCTTTGCAATGAG	alt_6085_new	7	7	8	10	19	9	9	6	5	4
CATCCCGTCTGACTAG	alt_6085_new	1	4	2	1	0	0	4	0	1	1
CTGCCCACTCGTTTTA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CGAAATACCAAGTGGG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ATTTCAATCCCCGCCT	alt_6085_new	3	7	9	6	11	4	11	8	14	8
GCCATACGCCGGTGCC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CCGGGTACTATCGTGC	alt_6085_new	4	46	4	6	62	7	52	6	50	5
CGCAGGTTCTCATGCT	alt_6085_new	28	47	45	37	36	27	42	22	50	21
TCTGGTACTTTATTCC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TCGATCTGATCCCGTT	alt_6085_new	40	37	41	30	39	31	51	28	46	41
TATGCTTCTGCAGCAA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CGATGAATCGCGGGAT	alt_6085_new	54	55	69	59	42	57	41	56	40	60
TTGATGCACCTCGATG	alt_6085_new	63	93	108	71	112	87	111	80	119	63
TGCCTGCCTTACTTAG	ref_6085_new	105	152	162	137	205	127	154	111	186	92
TGATCCCAGGACGCTC	alt_6085_new	10	14	16	5	7	9	7	9	9	10
TACTTCGTAGCCCCAC	alt_6085_new	59	59	71	53	74	51	92	52	75	52
TCCTTGGGGTTACGGC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CCACTGGGGAGGAGGC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CCGATGCACTGCTGGC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
GGGAGGGACCGTGTGT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CCACAGCCTAAACGCA	alt_6085_new	8	17	11	8	22	9	15	4	11	9
TTTAGACCATAGGGCG	alt_6085_new	9	19	12	15	15	4	22	12	18	4
TTGTACCTACGATTTA	alt_6085_new	19	25	19	20	16	22	17	23	20	19
GCTCCTGGTTACCTTT	alt_6085_new	38	41	42	40	51	25	47	40	64	36
TGCGTCGGCGGCATAG	alt_6085_new	12	19	18	24	26	23	27	19	20	19
CGAATGTATCGAGTAT	alt_6085_new	45	59	51	72	52	42	54	51	35	39
AGGTTTTTTTATCTAC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ACTGACTGTAGCTGAA	alt_6085_new	9	12	17	8	7	8	8	6	9	9
ATCCCTTTTGCCCTCG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ATGAATTCCGCGGCCC	alt_6085_new	16	17	14	13	22	15	17	11	17	13
ATGTGTCGTGGCTCAA	alt_6085_new	175	269	231	209	253	204	274	209	281	156
GCGTGAATGCGTACTA	alt_6085_new	5	5	11	6	11	1	9	1	10	3
AGGCCCCCATGATTAC	alt_6085_new	16	20	23	23	20	20	35	22	35	20
TGTATGGATACTTGGC	alt_6085_new	8	16	14	12	16	17	11	13	17	4
TTTGGCCCCCTCCAGT	ref_6085_new	112	134	117	123	112	115	128	79	156	81
TTTCTTGTCTCCCTCT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TTTCATCGCGTAAATC	alt_6085_new	32	51	55	36	47	43	63	39	52	28
TTTCTTAAATCATCCT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CTAACTACTTCGGGCA	alt_6085_new	23	19	35	12	27	14	20	18	32	16
GGCATGATGATGACTA	alt_6085_new	13	11	7	9	13	10	16	14	16	11
ATTGGTGTCTTGAAGT	alt_6085_new	25	29	33	28	28	29	40	23	30	24
ATAGATCGTCACTTAC	alt_6085_new	0	14	0	3	12	0	18	0	12	2
AAGTAACTCTTTCTTC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CTCCGTCATTTGGTTC	alt_6085_new	27	19	11	16	22	11	21	16	20	16
CCGTGCCTTTGCAATT	alt_6085_new	44	42	44	38	45	33	55	29	70	34
TGTGGAGGTTTAATTG	alt_6085_new	10	10	14	7	10	8	12	9	13	6
CCGGTCTACCTACGTG	alt_6085_new	11	15	13	7	27	7	15	14	26	5
TGGCACAGAGTTATGC	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TTATCGATTGAGCCAT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CAATATCGGGTTTAAT	alt_6085_new	8	16	18	11	16	5	13	7	8	2
TTGCTATAAGTCAAAA	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TTTTCCACACTTGGTC	alt_6085_new	95	111	130	116	118	115	133	108	128	86
CAGCAGGTCCCGTTTG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ACCTATACACGAGTGG	alt_6085_new	241	258	271	241	306	222	280	204	318	209
TGGTTTTTTCTGGTGG	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CTATCTCCTACGTGAT	alt_6085_new	27	33	44	29	28	14	61	14	33	18
CTCCTCTTGGTCAACC	alt_6085_new	31	45	43	26	52	30	60	23	46	25
CGCAAGGCCGTACTGG	alt_6085_new	48	84	45	51	96	57	94	55	88	48
CGGCGTTCTCGGCTGT	alt_6085_new	6	20	7	12	27	4	27	8	27	11
ACGAGATTCGATGGTC	alt_6085_new	28	26	24	18	28	26	19	22	24	21
CTTGCCCTCATGCGTG	alt_6085_new	57	83	65	36	86	34	93	54	72	42
CTGCTTGCTTCATTCC	ref_6085_new	19	29	51	35	41	34	26	42	45	32
CCCTGTGTTGTCAGTT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
ATTTCCTCCTGCTTGC	alt_6085_new	33	33	43	21	38	32	43	28	33	32
GGCTATGGTGTCTTTT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
CTGTTGAGCGTGCCGG	alt_6085_new	27	30	28	24	49	27	46	27	36	15
GAGCTTCGGGAGGCGG	alt_6085_new	97	121	112	94	137	117	135	95	119	117
AAGTCACGGTAGTTAA	alt_6085_new	59	51	45	54	57	51	60	39	38	58
TCTGTTTTGAGGCTTG	alt_6085_new	11	10	11	14	21	16	16	10	14	9
GTCCTCTAAACGTTCC	alt_6085_new	15	16	14	19	15	14	21	19	25	9
AGGACTTTACAGCGCT	alt_6085_new	69	78	73	82	64	58	78	64	67	61
TTCTTCTCCTTAGGGT	alt_6085_new	0	0	0	0	0	0	0	0	0	0
TCCTCAATCTACAACC	alt_6085_new	5	13	7	2	10	12	13	6	7	7
GTTCGGTTTCTAAGCT	alt_6085_new	20	28	31	15	43	30	34	23	36	20
CGGTCTATCGATTAAG	alt_6085_new	4	12	8	4	9	7	11	15	6	7
GTAGCCTCCCTCGAGG	alt_6085_new	93	97	72	72	113	70	115	51	84	84
TTACCTCTTCTGCAAC	alt_6085_new	5	4	4	1	4	3	4	0	5	2
TTATTAACTATTTACG	ref_1363_reverse	23	13	28	17	9	18	18	16	7	14
TTCTCATTGCATGCCC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
ATTCATCTATGGGGAT	ref_1363_reverse	46	19	53	59	33	28	28	49	32	46
ATGTCATCGCTTGGTT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCGCCAGGTGTAG	ref_1363_reverse	83	43	84	99	62	56	55	69	45	62
ACCAGCTTCTGGTATC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCACACTTGCTTT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTAAACTACTTCA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
AGTGGGAAGCATGATT	ref_1363_reverse	19	12	29	31	12	25	16	19	14	21
GCTGGGACGTATGCCA	ref_1363_reverse	48	28	69	57	48	53	27	65	49	58
TGCCTAGCGACTTGGG	ref_1363_reverse	86	45	100	84	61	96	67	65	56	85
GTGCGGCCTTTCTAGA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCCTCCTTTACCC	ref_1363_reverse	42	50	75	60	43	64	31	63	48	47
CTCTGTTATTCGTAGC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GAACTTGCGCGGTTCT	ref_1363_reverse	15	7	29	24	13	27	4	20	6	19
GTCTCCCGGTTTAACC	ref_1363_reverse	25	14	17	28	14	22	23	18	18	24
TGATTCGTGGAGTGGT	ref_1363_reverse	72	56	92	80	54	97	44	84	43	61
TTATTGTTACATATTA	ref_1363_reverse	1	2	6	7	0	5	0	7	1	0
AGGTATATACGAACGT	ref_1363_reverse	49	22	57	57	34	33	27	30	22	40
TCATACAGTGTCTCCA	ref_1363_reverse	22	11	23	18	13	14	11	12	6	8
ACCTGAATTAACGCAG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CTGCAGCGTAGCTGGT	ref_1363_reverse	154	84	152	124	90	141	104	134	99	99
TCTTTTGCATTGACTT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGACTGGAGCTCG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TTACCCGGTACATACC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGCGGTAGTGTGT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CGTAACCGTTTTCGCT	ref_1363_reverse	23	13	34	22	11	25	19	26	17	18
ATTCATCAGTGGTCAT	ref_1363_reverse	29	22	45	37	19	33	18	40	15	37
AGCAGTGCGCCTCCCT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CATTGCGTTGCCTCAT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGTGCACTCTAG	ref_1363_reverse	49	41	101	66	52	60	35	75	36	61
TCGCACACCAGGTTTT	ref_1363_reverse	94	32	85	64	29	51	47	65	42	62
AAAGTCTAAGTGGTAA	ref_1363_reverse	182	115	197	165	105	154	131	186	132	144
TGAACTAGGTATGCGT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
AACCCGGCAACCCAGG	ref_1363_reverse	3	1	5	0	1	2	1	5	1	6
TTTCGGACTTTGGTAG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CGCTAGGTCGATAAGT	ref_1363_reverse	161	121	197	168	142	159	169	152	124	134
TCACGACTATGCTTTA	ref_1363_reverse	15	7	13	12	3	12	9	7	3	17
AACGCCTCACCGACGA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
AATGTGATATTTTTTT	ref_1363_reverse	7	11	5	10	12	15	8	17	13	6
CTCGGCATGTATACCG	ref_1363_reverse	54	51	74	69	51	60	54	72	40	57
ACGAATTCTGGCGATC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCGTATGTACAGA	ref_1363_reverse	24	15	27	25	10	22	12	24	20	19
TGGCAACATTTTACAG	ref_1363_reverse	177	102	188	174	95	133	108	150	77	141
GCATCTCCCTGAACTC	ref_1363_reverse	74	50	99	83	51	68	52	66	54	68
CGCCCACTTTGGGTCC	ref_1363_reverse	81	53	93	58	48	68	60	80	50	66
TTAACATGTCTTTGGG	ref_1363_reverse	2	3	12	9	5	4	4	8	8	10
CTATGTACTCACGTCG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GATCGGTATTTTGCGA	ref_1363_reverse	41	36	44	59	37	48	25	33	25	33
TTTCTTAGCTTATGAC	ref_1363_reverse	48	29	47	47	30	48	17	50	27	43
TCTTATTCTGGCACCG	ref_1363_reverse	42	17	52	47	21	27	24	44	30	36
GCTTGTCGGACTACGA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCGAGCCCCGTAA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GGTACGCTAGTAACCC	ref_1363_reverse	6	4	11	9	10	10	2	7	5	7
AGCTTACGCTCACTAG	ref_1363_reverse	50	42	96	86	40	78	45	68	52	56
CGATCGTATCCGAGAG	ref_1363_reverse	40	31	48	39	25	45	25	43	25	41
TCACTTCTGTGTACAC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
ATCTAAGAATCATCAT	ref_1363_reverse	83	60	122	109	59	103	60	90	65	74
ACTCAACAAGATCGTA	ref_1363_reverse	54	27	57	63	33	45	36	41	39	66
CCAACAGAACAAAGAG	ref_1363_reverse	24	20	31	23	18	28	10	19	17	27
CGTGACTCGTTGGTGG	ref_1363_reverse	37	24	32	38	27	39	20	29	18	27
TATCTCAAGCCCATCA	ref_1363_reverse	35	15	39	58	23	42	21	27	25	31
CTTCATTACTAAGTTA	ref_1363_reverse	95	48	100	109	62	94	76	94	71	86
AAGCGGATTGTGTCAA	ref_1363_reverse	48	39	59	50	41	39	49	58	29	56
AACTGATCGATGAACA	ref_1363_reverse	24	22	24	24	11	20	12	20	14	17
TGTGTTGTCAAGTTTT	ref_1363_reverse	28	12	39	31	22	33	22	32	16	31
TACAAACTTCCAGGGG	ref_1363_reverse	8	2	11	13	6	7	4	5	5	14
CGCCCTAGGTTTGTCT	ref_1363_reverse	268	192	363	279	187	271	191	259	194	227
GCCGCTTGCCAAGTGA	ref_1363_reverse	100	92	139	122	92	118	81	131	103	98
CGAGTGTATACTGCCT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGATACCCTAGAT	ref_1363_reverse	186	194	234	212	199	184	210	189	203	190
TTTCCATGTGTTGCTT	ref_1363_reverse	204	85	236	190	133	187	127	194	107	169
GTTCGCTATCCTTGTT	ref_1363_reverse	99	53	109	85	63	86	64	71	62	78
ACTAAGCAGTCGGACA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
AGACCCTGCGGTAACA	ref_1363_reverse	9	3	16	5	2	8	5	4	5	9
CCTAGTCGGCTGGTGA	ref_1363_reverse	51	30	47	53	31	70	31	61	41	34
GTCCTTTCTACGGTTT	ref_1363_reverse	17	10	17	24	10	25	17	13	21	13
TATCCATTTAATTCGG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGCCTGCTTTTGCCAC	ref_1363_reverse	11	19	27	20	11	19	16	13	19	23
TTCAAGGCCTATGAGT	ref_1363_reverse	38	25	63	36	26	48	21	54	35	38
GGGCTAATTGGCACGC	ref_1363_reverse	64	20	55	52	26	41	19	45	30	34
TAGGAAAATTACTCGC	ref_1363_reverse	84	51	101	97	41	91	47	74	47	74
GTGTTATTTCTGAATT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
CCAACACCGCAATTGC	ref_1363_reverse	5	7	6	6	4	4	5	13	6	6
GATAGTTGCACGCCCG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGTAATGTCCCCTCTG	ref_1363_reverse	51	29	47	55	28	49	30	57	31	34
TTATGGCAGGGAGTAA	ref_1363_reverse	14	14	28	22	16	15	19	16	13	15
AATACGGCCGCCGCCA	ref_1363_reverse	11	11	17	9	3	11	6	7	7	7
GTTACGAGCACGTTCC	ref_1363_reverse	7	10	9	5	6	17	6	9	3	8
AGCGTTATTTTTAAAG	ref_1363_reverse	43	40	68	51	39	56	42	44	33	38
TGCTCAGCACGATTCG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TCGACCCAGTTTAACT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GATTACATATAGTACA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCCGTAGCATATT	ref_1363_reverse	22	17	15	20	10	17	7	23	13	9
TCTCCCGGTCGTTCAT	ref_1363_reverse	9	11	14	6	21	18	14	18	20	12
GCCCAAACGTCCCAAG	ref_1363_reverse	51	44	71	78	64	58	57	55	51	59
GAGCCAGCCCGCCTGC	ref_1363_reverse	40	23	36	49	24	44	23	35	40	32
CGCCACTGCAGGCCTG	ref_1363_reverse	15	31	18	15	33	15	29	11	24	20
TGCTTTTGTTTTGTGA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTATAGGTCACCA	ref_1363_reverse	98	68	119	122	68	84	65	104	70	92
CCCCGCTTGTGTTTGT	ref_1363_reverse	34	65	54	55	56	32	47	31	51	30
TAAGTACCGCGTTGAG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCCTCCTTTTGCA	ref_1363_reverse	105	84	110	124	93	113	88	112	93	96
TGGAACATGATCTCAC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTGCCCGTCCCCC	ref_1363_reverse	511	331	743	646	354	531	349	508	379	435
GACTCCCTTTTAAAAC	ref_1363_reverse	15	25	30	23	32	21	27	25	29	24
TTTCTTCTCATTCCGC	ref_1363_reverse	29	21	51	36	12	26	17	30	14	34
GTCTGTAATTCATTAC	ref_1363_reverse	33	17	31	30	25	38	18	26	23	25
ACTACTAATAGATCCG	ref_1363_reverse	82	53	92	71	45	74	44	61	43	74
TGAGTAGGTTCCTACG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCGACATGCGTAG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CACGCAAATGTGGTCA	ref_1363_reverse	68	45	80	87	37	66	45	57	43	75
ATGTGGTAAATGTGGG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGGATGAAATGTATAT	ref_1363_reverse	106	69	127	90	83	107	64	123	59	98
CTCTATATGCGTCTTG	ref_1363_reverse	26	20	17	26	13	10	18	14	14	19
AGCCGCTGCACAATCA	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GGGGGAGTGCTTCCGG	ref_1363_reverse	55	35	73	46	35	51	24	30	20	40
GTCCGAATAGTCCAGT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCTTGATTTCAC	ref_1363_reverse	13	3	20	9	4	8	9	12	15	5
TGATCGAAGAGTCCTC	ref_1363_reverse	279	184	347	295	159	308	187	260	208	238
CTAATCTTTAGATCCG	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGTTAGTCTGGTT	ref_1363_reverse	61	43	55	73	41	79	56	49	56	40
ATATGCCTTCCGGAAC	ref_1363_reverse	91	70	110	98	56	75	67	79	77	82
TTATCATGCGGGTTCT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GGTATACCAGGTCAGG	ref_1363_reverse	150	96	213	133	76	140	64	156	96	133
CGGATACGGTATACTT	ref_1363_reverse	39	23	42	37	24	46	27	42	23	31
TATGCCAACCCTCTGA	ref_1363_reverse	2	1	5	3	3	1	5	2	1	6
TCCTCCGATCAGCACC	ref_1363_reverse	15	2	9	7	6	7	3	6	7	7
TGGGCTACCAAGTTAT	ref_1363_reverse	109	66	135	134	92	106	57	119	80	94
TAGTCCGCGACTGACG	ref_1363_reverse	11	7	10	13	10	11	15	14	4	6
ATTTGTTCGTGTCTCA	ref_1363_reverse	11	6	9	13	11	10	5	12	10	13
GGACATGCGCTAAACA	ref_1363_reverse	165	102	193	195	105	209	119	172	116	195
GTACATTTTCGAACTT	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GATTAGACTTCTACGA	ref_1363_reverse	54	32	70	57	45	50	34	58	47	54
GGTCAACTCATATATC	ref_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTTCATAATGGCTTAT	ref_1363_reverse	99	50	95	115	64	86	56	82	56	73
TGGGCCCTTTCTCCTT	ref_1363_reverse	37	16	54	35	18	43	26	48	20	37
GTGAGCATCTCTCAAA	ref_1363_reverse	59	30	73	75	36	76	48	55	52	61
CTGACAAATTAGGAAG	ref_1363_reverse	6	2	10	15	3	9	4	10	8	5
CCATCCGCATGCTTTT	alt_1411_missing	29	48	36	27	38	27	30	28	39	22
ACGGAGCCCATTGTGG	alt_1411_missing	1	1	1	1	1	0	3	1	0	0
CGGGACGTCCGGTTGG	alt_1411_missing	20	31	35	26	20	23	30	24	33	14
AAACTCTACGACGCTA	alt_1411_missing	8	13	21	8	12	10	12	8	8	10
TTCGCTGTAGAGTAAA	alt_1411_missing	44	46	46	36	51	42	44	38	56	44
CGCTTTCGTTTCGCTG	alt_1411_missing	9	17	13	13	7	8	11	12	11	12
ATCTAATAGTTGTTCT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TAACCGTACATAGTAT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
ATCTGCATAATATACT	alt_1411_missing	48	68	70	54	68	52	56	39	66	39
TTTATTTTGCGATAGT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
AGTACTTATCGTTACG	alt_1411_missing	164	217	232	168	229	185	256	159	250	157
TAGTTTGTCATGTTAG	alt_1411_missing	29	38	22	22	28	25	26	24	47	24
TGTCTTCTACGGCAAT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TTGCACGTGGAACTCC	alt_1411_missing	11	9	10	10	8	10	17	15	12	11
GGACGGACTCTCACAA	alt_1411_missing	175	197	215	129	172	127	156	135	181	141
GTTGCTCGTAGATGGG	alt_1411_missing	125	140	140	134	137	128	136	117	135	139
GCGTTTAGTGGTTAAC	ref_1411_missing	18	24	26	24	14	32	32	22	34	27
TCTAATTTACAATGTT	alt_1411_missing	11	17	17	14	17	16	12	9	16	6
AGTTAAGGTTGTCTGC	alt_1411_missing	3	3	2	2	4	2	3	3	2	4
TTCTCCAGCTTAGAGA	alt_1411_missing	41	52	59	31	51	32	52	23	51	39
CATGGATGTTGCCCCA	alt_1411_missing	14	13	20	24	18	32	16	18	27	9
TTCAGGGTCTACGTTT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TAATAATGATTGTTTT	alt_1411_missing	13	13	22	14	16	15	9	15	15	10
CTAGAGAGACTATTCG	alt_1411_missing	18	18	13	14	10	25	13	19	22	7
GGCTTCGGCCGTCTTG	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
AAGAGACAGTGTAGTC	alt_1411_missing	16	22	18	10	33	13	27	14	18	13
ACAGTATAATGTTTAG	alt_1411_missing	16	24	19	20	28	24	19	19	15	18
AAGGTCTGTCTATCCG	alt_1411_missing	13	19	14	10	20	14	46	19	22	9
TTATGTATAGATTGTT	alt_1411_missing	6	12	3	5	5	8	4	3	9	3
ATACCGCTTCATCTTA	alt_1411_missing	62	65	76	48	66	46	81	56	64	59
CAAGAGCGTTATCCTT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
GCTGGTAACCACGGGG	alt_1411_missing	6	9	17	5	11	11	13	7	11	16
CAAGTGGCAGCGGCTC	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
CATGCGGCTTTGCTTA	alt_1411_missing	3	3	1	1	3	0	0	0	0	0
TCTTGTATACGAATCT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TCTTTCTTTCTGTTTG	alt_1411_missing	25	12	27	22	14	18	16	24	24	17
CTTTATGTAATGGTGT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TGTCCCACTGCTTAAA	alt_1411_missing	105	80	73	86	94	76	78	79	86	63
TTCGACTTTCTGTTCG	alt_1411_missing	58	51	62	52	56	51	54	44	50	32
ATCGTAGTTAAAATCT	alt_1411_missing	85	63	95	85	77	67	79	72	91	59
GGACCTTTCGGCTGTA	alt_1411_missing	8	6	9	11	10	9	8	4	3	3
GGCAACACCAGCTTAA	alt_1411_missing	25	27	36	32	29	32	30	14	27	21
GTGCAAAAAGGCTATT	alt_1411_missing	39	50	47	39	40	34	58	25	51	39
AATGCGAATAGGCGCT	alt_1411_missing	5	7	12	13	14	5	11	10	10	5
CATCGTATTAGTATTG	alt_1411_missing	17	18	10	13	14	11	9	15	14	10
CCATCATCATCGTGTT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
GCAACCCCGTTCGTAG	alt_1411_missing	4	12	14	5	8	8	10	2	10	2
TAGCAATGCTCCTAGT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TATAAGTTTTTTTACC	alt_1411_missing	26	45	41	38	46	36	40	39	54	25
CGCCTTTTGCTTGCGT	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TATGGCAATTGTGAGC	alt_1411_missing	17	25	34	8	18	9	13	13	17	15
GAGGAAATACTACTCG	alt_1411_missing	32	37	38	32	35	41	34	29	32	27
AGCTTCATGCACGGCA	alt_1411_missing	60	76	82	64	81	67	71	81	79	47
CACGGCGCGGGGCCTC	alt_1411_missing	34	34	45	35	36	37	36	39	30	25
CATTGGTCGTGTGATG	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TATAGCGGGTTACCAT	alt_1411_missing	0	0	2	0	3	0	0	0	0	2
TCGCTTCCTTTATTTT	alt_1411_missing	16	33	8	12	15	16	23	13	18	16
GGCGGCGGTTGGTCAT	alt_1411_missing	2	5	2	6	3	0	3	1	5	4
TCGAGAATCCGTGTTC	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TCGAATACAGGCACGG	alt_1411_missing	22	36	29	21	26	17	17	20	33	13
TCATGCGATCAGTAGC	alt_1411_missing	58	51	60	54	45	59	56	34	58	46
CGTGGCTTTGTCGAGG	alt_1411_missing	0	0	0	0	0	0	0	0	0	0
TCCATAAGATGCATAT	alt_1411_missing	108	96	132	111	115	102	126	127	118	114
CATAGCATCTTAACGG	alt_1411_missing	30	22	35	32	46	28	34	32	45	19
CATTTCCGCGAGAAAG	alt_5492_RC	40	57	51	41	41	47	47	34	68	59
ACTCTTTTGGTAGGTC	alt_5492_RC	46	55	52	42	62	41	43	44	48	44
ATTCTTGGTCAACAAT	alt_5492_RC	39	57	50	52	49	36	53	32	51	24
TAGTTTTGAGTACGTA	alt_5492_RC	2	3	2	3	3	1	4	3	6	4
ATATTTTCGAGGTTCG	alt_5492_RC	10	8	15	11	19	4	13	9	11	6
CGTACCTCGTGTATTC	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
ACCTGCACGCAGGTAA	alt_5492_RC	17	14	14	11	6	9	27	14	19	8
TACGTCTAGAACGCCT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
GCTACTATGATAATGT	alt_5492_RC	16	15	14	17	20	15	22	14	14	10
GTGAGTGTGGGCGTGG	alt_5492_RC	42	53	68	30	75	45	73	45	71	48
ATACGTTATCTATATT	alt_5492_RC	155	196	228	180	209	178	220	178	195	134
CCGTGGTGCCTTGAGG	alt_5492_RC	128	143	171	143	172	118	176	128	168	121
AGATCATAGGAAATCA	alt_5492_RC	18	16	26	15	20	19	19	18	17	15
TGCTCTTAGGATTTGA	alt_5492_RC	23	37	37	31	37	27	31	33	31	31
ATCAACTGGCTACCAT	alt_5492_RC	21	21	23	18	36	18	27	11	35	18
GGGAACGATCGGACAG	ref_5492_RC	62	66	67	60	62	59	78	44	65	47
GGATTGGGCCTCGAAG	alt_5492_RC	65	75	61	71	65	58	82	47	70	43
CTCCCTGTTTTTCAGG	alt_5492_RC	61	69	39	67	76	49	60	38	68	36
ATCGGATTTGGTGCTC	alt_5492_RC	25	36	36	25	41	39	36	27	47	21
GGATTCTAAGAAGCGG	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
TTACTGTTTCGCTTAC	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTCTATTGCTTT	alt_5492_RC	49	40	51	55	53	43	65	40	47	55
TTGCTCGTTATCCCAG	alt_5492_RC	6	6	7	7	12	10	21	12	12	14
CGAACGAACATGGTTT	alt_5492_RC	23	32	23	31	16	18	16	20	35	24
TACTGCAGGGGCTCAC	alt_5492_RC	12	18	22	24	17	24	12	20	17	15
TTTCACACGGCCTATG	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
TCATCCCTGTTTCCAC	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
ACATTATTCCCTGGCT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
TAAGCGTCAATCTCCC	alt_5492_RC	114	134	153	111	148	116	133	125	144	103
CGCAAGTCTCGTCGCC	alt_5492_RC	24	19	28	17	24	16	25	26	18	20
GAACCTGACTATCTGA	alt_5492_RC	9	22	15	11	16	11	20	6	23	12
AGTCCAGGGCTACGTG	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CACACGATGCTAGCAG	alt_5492_RC	72	96	99	93	104	65	94	83	98	63
GCTTCCTTCTTCCAAA	alt_5492_RC	6	4	3	1	2	3	2	1	6	3
CGACGTGTCTAACAGT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
GTGCAATAATGGCCCC	alt_5492_RC	29	13	15	28	27	14	23	24	12	19
GATAGAGTTACAAGAC	alt_5492_RC	15	20	9	17	14	7	5	9	7	8
TCTCTTTTAATATGCC	alt_5492_RC	324	372	389	318	428	270	420	319	433	285
GTCAATATTGTTTAAG	alt_5492_RC	29	47	36	32	48	31	46	24	42	17
CTGCTTTGTCCAGCGG	alt_5492_RC	17	13	11	9	12	18	15	12	20	12
CCATACCTGTTCCCCT	alt_5492_RC	7	30	15	11	20	11	31	14	17	6
AAGTTCTTGTGGTCCT	alt_5492_RC	52	90	105	81	91	67	113	72	98	54
ATCACTTAAGGAATAT	alt_5492_RC	24	45	38	25	30	35	55	33	53	27
GTCTATCTGGGGTTAT	alt_5492_RC	30	22	35	37	32	35	30	37	36	35
AACAGTTACGATTATC	alt_5492_RC	14	24	16	18	27	28	27	13	19	19
CGGGTTACTGTCTTGT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
TCCGGGGAGTTTCTTC	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CAGGGCTGATGGATGA	alt_5492_RC	14	18	18	20	31	20	30	24	28	27
TGCATAGATCGCGGGC	alt_5492_RC	34	54	60	38	38	32	58	34	54	36
CCCCTAGGTCTGCCCA	alt_5492_RC	16	29	20	21	20	25	19	11	24	21
GTATCTGCCCCTTATT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CGGCCTGTGGTGTCTG	alt_5492_RC	21	28	28	22	27	38	36	21	22	21
TGCCGAATGATCTTTG	alt_5492_RC	29	28	25	22	28	18	25	18	33	18
TCTCGTTTTCGCTAGT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
ATGCGCGTGGAGTTTA	alt_5492_RC	28	40	32	19	32	29	33	22	38	23
GGTCTATTCAAGGATC	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
AATTCGTCTCAGCCAT	alt_5492_RC	24	38	46	21	34	28	38	30	48	48
GTGATGATAATGAGTG	alt_5492_RC	23	20	25	24	26	26	15	19	34	17
TAGACCAGCCCCATTC	alt_5492_RC	28	31	27	24	24	26	23	24	27	18
AAAGCGTCAATCTCCC	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CATACTAACCCGCCGA	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
ATTCTTGCGCGGGGTT	alt_5492_RC	19	18	21	17	25	14	31	22	18	20
ACAGCTGGTCTTCATA	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CTTATCCCGCTAAGTT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CAATTTTGGAAGATTC	alt_5492_RC	3	6	0	5	1	3	2	5	1	2
TGTCGTTGATGATACT	alt_5492_RC	86	110	128	75	100	86	101	74	112	89
GGGCCAACAGTGAACC	alt_5492_RC	43	35	49	25	30	35	39	38	37	28
CGTGTCCACATGAGAT	alt_5492_RC	40	48	57	45	39	40	40	34	40	31
GGATCATGTCAATCGT	alt_5492_RC	20	13	11	7	16	9	14	11	15	6
ATGGCCACTCCTTGCA	alt_5492_RC	1	1	0	1	0	0	0	0	1	0
GTCGGCTTGATAGTTC	alt_5492_RC	1	1	1	1	0	2	3	0	3	3
TACGTTGGGGTACCAT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CCATCGTAAACTTTCA	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
TCTATAGTGTTGATAT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
TACGGTGTTTTCCGGC	alt_5492_RC	54	68	67	64	74	56	74	69	58	54
TTGTTCAGATGTAACT	alt_5492_RC	0	0	0	0	0	0	0	0	0	0
CACAGGGCGCATACTT	ref_4136_missing	8	14	9	9	10	6	9	5	13	8
AGACCTCGACTCCCTT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
TTGTTAAGAGAGTTTT	ref_4136_missing	0	1	0	0	0	0	1	0	0	2
GTCACCATCCTTTCGA	ref_4136_missing	13	22	12	5	25	8	29	9	26	10
CGGCCACCTGACGGCT	ref_4136_missing	15	21	13	28	25	20	16	8	29	18
GACCAGGAACAAGTCT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
AGACTTCGACAGGACA	ref_4136_missing	5	5	11	8	8	3	11	5	10	4
CGTGTACTTTTGAGTT	ref_4136_missing	1	4	4	2	3	4	5	3	14	3
GTGTACGTAGCTTTCT	ref_4136_missing	3	7	5	2	13	1	7	9	3	2
GTCGTTTTCATCACAG	ref_4136_missing	0	0	1	0	0	1	0	0	0	0
TCCGCGTTTTCTGCCT	ref_4136_missing	4	12	4	11	6	5	15	6	5	5
GATGGTACGGAACGCG	ref_4136_missing	9	18	4	12	11	12	12	7	17	2
GTACTGGCTTCTGGCG	alt_4136_missing	1	9	5	3	9	4	6	4	13	5
AGCCAATTGTCTGTTG	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
TGAGGGTCTGTCAACT	ref_4136_missing	7	6	6	1	16	7	8	6	3	3
CTGCGACCTCGCGCAT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
TTATAGGCTCATGGTT	ref_4136_missing	3	12	6	3	14	5	6	7	10	4
CATCTCATAGCTGTCT	ref_4136_missing	1	9	7	2	8	4	15	5	6	5
CTTATTGGACTAAGGC	ref_4136_missing	10	11	4	11	19	5	10	5	13	6
GGTCCCTTATCAACGC	ref_4136_missing	11	11	19	10	21	8	18	5	21	5
CGCTTCGATGGGTCGG	ref_4136_missing	8	15	8	8	9	5	15	13	13	12
TCGACGCCCGGAACTC	ref_4136_missing	11	11	14	10	20	8	25	10	24	6
ACGGCCGCCCTGGCCT	ref_4136_missing	36	56	38	27	64	40	61	25	44	41
ACTCCTACGACGATGT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
AGCGTACTGCAGGTAA	ref_4136_missing	7	15	5	4	14	7	18	9	14	10
TTACGGCGAGTGAATT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
TGCTCCAATTCGCCCA	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CTTGCCCAATGTTCTT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
ATTTTCTGTCTTATGG	ref_4136_missing	5	24	24	10	27	9	20	8	18	8
TTTTGTCCCAATCTTA	ref_4136_missing	25	31	51	26	22	25	39	21	26	26
TAATATTGTTAATATC	ref_4136_missing	1	7	10	4	5	4	8	2	6	3
AGGCCGGAATCATCTT	ref_4136_missing	5	9	12	4	8	7	10	7	13	4
CCTAATTGGGTTCTCA	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
TACTGGTACGTGTTGT	ref_4136_missing	5	7	5	3	9	2	5	0	5	3
ACCGCTTGTCTGGCTC	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CCTAGTATTGATGTGT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CGTTTTATATAGGCCG	ref_4136_missing	32	62	31	32	58	31	47	26	44	29
TAGAGATATTCGGCAC	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
GCTCCTTTCCAAGCTT	ref_4136_missing	44	67	63	50	102	45	90	57	107	64
TTAATGTAACGGTATA	ref_4136_missing	27	77	42	27	67	33	49	26	73	28
GTTTCCGGTAGTTATG	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
ACTACTAATGGTGATA	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
GCCCATGATATGCAAT	ref_4136_missing	4	7	3	5	8	3	7	1	5	3
AGCTCATGTGAAAGGG	ref_4136_missing	5	20	12	14	25	12	14	4	19	9
ATACTACATCCGAATT	ref_4136_missing	0	0	2	0	1	0	0	2	0	1
ACGGGGTCTCGGAGAG	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CCCGCTATTAGCCCAT	ref_4136_missing	3	7	5	2	1	2	5	0	4	3
CTGTCCACTATTAGAA	ref_4136_missing	9	17	6	10	13	9	16	11	16	8
CAAGTGAGTGTAACTT	ref_4136_missing	0	3	6	0	1	2	0	0	2	2
TAGGCGCAACGTTAAA	ref_4136_missing	8	22	12	7	20	10	22	13	20	10
CGACAAGAACAAGTTG	ref_4136_missing	3	16	11	9	7	12	18	7	12	9
ATTTACTTGTTACCCA	ref_4136_missing	4	8	11	1	4	5	9	4	7	2
CAGGAAGGTTCCGGGT	ref_4136_missing	1	5	4	0	1	2	1	1	5	5
TCACAAATCCATCGAG	ref_4136_missing	29	40	45	22	45	26	56	23	62	26
TGCGGTGGTTCTTTTT	ref_4136_missing	48	79	64	45	54	55	54	49	68	40
TTGACTATTCTCAGTC	ref_4136_missing	3	8	5	3	5	6	18	5	15	5
TTCTTATTGCCGCGGT	ref_4136_missing	14	33	30	20	33	15	27	22	28	7
TTGTTCTTGACTTCGG	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CCCTTAGTGTGCGTGA	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CATCCCATGATAAGTC	ref_4136_missing	0	0	0	0	0	0	0	1	0	1
TGGGCACAGTAAGTCC	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
TCTTAGGATTATGGTG	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
GCAATACCTAGGGTCG	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
ATTTCCGAACGCGCTG	ref_4136_missing	16	33	23	22	25	21	26	19	30	20
GCCTCGCTTTGTCATA	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
ATGGATTGTTCAAATC	ref_4136_missing	5	11	3	3	9	3	13	4	8	6
GCCCGGAGTTATCGCA	ref_4136_missing	14	34	18	23	29	22	21	20	32	14
TTATCAGGGTTACCCG	ref_4136_missing	1	1	3	1	3	0	2	0	2	2
TGAGGCTTCTTAGTCA	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CTAGACCTGTTCGCTG	ref_4136_missing	12	8	6	6	6	6	16	4	16	4
AGATGCGAACTCCTTT	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
GAACACTGTTTACAAC	ref_4136_missing	27	31	29	23	47	19	41	12	53	15
ACGCTTATTTTTCTTC	ref_4136_missing	0	0	0	0	0	0	0	0	0	0
CGATATCGCCCAACCG	ref_4136_missing	3	3	7	0	5	3	5	3	3	3
GCGACGTACTTAGCTG	ref_5640_new	5	5	7	3	10	4	8	5	12	6
CACGTCGATGTCGGTC	ref_5640_new	2	17	5	5	10	5	18	7	22	10
CTTGATGATGACGGCC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TCAATCTAGTTTATTC	ref_5640_new	22	34	26	16	29	26	43	12	35	17
AATGTTATTAACCGAC	ref_5640_new	32	72	33	42	65	39	57	38	75	33
GACTTCACTTGCTTGA	ref_5640_new	2	2	9	1	1	1	1	3	3	0
TATACTACGTTCTATT	ref_5640_new	12	14	14	5	25	20	25	9	29	12
CTCTGCCTTAGTGGCA	ref_5640_new	9	18	6	8	11	5	20	4	19	8
ATTGGGGGTCGCCAAG	ref_5640_new	48	87	48	51	83	57	95	56	95	41
ACCGCCCCATGGTCAA	ref_5640_new	4	3	4	2	14	3	4	3	13	3
GGGTATGCGATAAGAT	ref_5640_new	7	4	6	0	9	6	11	0	9	5
TATTGGGCTCTCCGGA	ref_5640_new	50	96	63	68	113	57	98	44	109	47
CATAAAGAGTGTGATG	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GCGTTAAGCCTTACGT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
AAATCCTCATATTCGA	ref_5640_new	19	29	12	18	27	11	22	14	28	9
CTATTTTTCCGAAAAA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TCCCGAATGTGCTGGA	ref_5640_new	13	49	13	31	45	16	43	9	52	8
TCTCGTACATTAGTCA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TCCTACGGGTGTCCCG	ref_5640_new	16	39	21	10	32	13	41	14	34	18
CTCACCGCGTCAATTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TGCTAATTAATGTATC	ref_5640_new	9	7	10	7	17	8	13	7	13	8
CCAACAATCAGTCTTC	ref_5640_new	1	13	1	4	21	3	12	1	12	5
TTGCAGAAACATTTGA	ref_5640_new	9	18	12	19	21	9	24	4	18	11
TTGTTCACCTATTTCC	ref_5640_new	15	28	22	21	29	20	41	9	39	12
CTCCTTTGAAGTGCGA	ref_5640_new	8	7	6	3	9	3	9	2	11	6
CTCTTGCGATTGATTT	ref_5640_new	2	9	4	4	8	1	4	3	8	2
CAGGTGTGCTTCGAGC	ref_5640_new	2	11	3	2	8	5	10	1	13	3
AGCGACGACACGGGAA	ref_5640_new	12	13	9	9	20	10	21	5	24	7
GTCCTGTCGTCGGATA	ref_5640_new	0	2	1	1	0	0	2	0	4	0
CAAAAGCGACGTAAGC	ref_5640_new	22	29	18	29	33	23	42	16	51	19
TCCATGGATTAAAAGG	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GCTCGTCGCGTGTACG	ref_5640_new	22	27	13	22	29	21	26	22	35	17
ATTGGGTGCTTCATCT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CGTGTATGTACTCCTT	ref_5640_new	17	15	19	14	19	14	27	11	25	9
CGGTTAGTGCGTACTG	ref_5640_new	6	23	13	4	22	5	23	12	21	7
GTCTACGATCTCGGAT	ref_5640_new	62	72	71	51	89	55	81	47	90	51
GTATCTGACCCGTGAT	ref_5640_new	4	4	2	7	8	1	7	4	7	3
GCGAGAAAAACCCCAA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TCGCTTTACTCGTACC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TGTCAAACGTAACATA	ref_5640_new	7	9	9	6	22	7	10	7	16	5
GTCAGCTACAAGTAAC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TTTTTTGTACACTGGA	ref_5640_new	23	44	12	20	44	12	22	20	33	12
TGTCCCTGAATAAGAT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CCTATATCGTACCGAT	ref_5640_new	26	77	36	31	78	43	87	44	98	29
CAAACCGGATAAGAAG	ref_5640_new	2	3	4	1	5	1	9	2	3	3
AGGTCTAGGTATCGAG	ref_5640_new	7	11	7	4	9	6	10	5	10	0
GGGGTCCCTGCGGGTT	ref_5640_new	4	16	3	10	7	1	9	8	7	5
AAGCACTCTTAATATG	ref_5640_new	8	14	11	19	29	8	21	17	20	7
CCGTGACAACGGGGCC	ref_5640_new	9	55	10	8	44	8	47	7	52	7
CGCAGGCTAGACCAAA	ref_5640_new	20	32	20	15	30	18	29	12	34	15
TGTTCAGCATTATCGG	ref_5640_new	29	52	34	20	64	24	67	17	54	26
CTTGCAAAACTGTCCC	ref_5640_new	5	12	8	5	13	5	11	4	11	1
ATGTTCTTCGACTGCA	ref_5640_new	10	32	15	7	24	13	28	12	28	8
GCTGCTTCATCTACGA	ref_5640_new	0	2	1	1	2	3	1	1	3	1
CGTATCTGACCTGGCT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CCGATTAGGCTTGGTT	ref_5640_new	11	8	5	5	12	5	15	6	10	5
GTATTTGTCGTTCGCA	ref_5640_new	2	2	1	2	2	1	2	4	1	3
ATACACCGAAATTTTA	ref_5640_new	4	4	6	9	7	4	6	1	14	3
TCCCTTTCGGAGACTC	ref_5640_new	21	51	35	22	43	12	51	29	43	17
GCAGGAGTCTCCTGAT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GTGTGTTTGTCCGGGC	ref_5640_new	3	5	11	7	21	10	11	3	13	3
ATATTTCAACTCTGTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
AACATCATTCCACCCA	ref_5640_new	31	33	34	20	29	20	37	19	34	18
TCAATATCATTTATTT	ref_5640_new	5	9	5	6	3	11	8	5	8	9
GAACAATAAGCGTCGT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GTGCTCCGGTATATCG	ref_5640_new	3	18	4	6	12	7	20	8	15	6
GCCTTGACCCAAGTTC	ref_5640_new	33	68	38	34	82	27	112	35	82	26
TGGGATCGCTTACTCT	ref_5640_new	25	51	36	29	65	49	60	23	62	35
CATACTACGATATCGA	ref_5640_new	16	22	15	13	23	27	20	15	29	11
ATGCATGTACGGGCAC	ref_5640_new	40	57	35	37	58	27	67	33	58	16
AAGCAAAATCATCTTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TTCTTTAATGGGTTCG	ref_5640_new	1	4	1	0	0	4	2	0	2	0
TACGCCAGACTGCCTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TTATCTTTTGACCTAT	ref_5640_new	5	12	8	7	12	0	17	8	12	3
TGGGAGTCATTCATAG	ref_5640_new	8	32	15	9	20	6	19	6	21	14
TTAGGGGAGTTTAGGC	ref_5640_new	27	49	45	33	53	30	72	30	69	22
TGACAAATTCGCACTT	ref_5640_new	5	11	6	4	7	1	2	5	3	7
ACAAGAGTAATGCACA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GCGTTTCTTCCCGGCT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CAAGCCTTTAGCCTCC	ref_5640_new	6	43	8	3	49	3	60	2	70	4
GATCGACACAAAAACC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
ATATGGACTGCCAACC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
ATTTTTTGCAACTTTC	ref_5640_new	16	40	18	11	38	18	42	25	25	11
TTTTAGGCATTTGTCG	ref_5640_new	24	43	37	27	31	25	54	29	57	23
ATAGATATGTCAGACA	ref_5640_new	72	167	97	86	153	111	172	81	184	84
GAACACTCACTAGGGG	ref_5640_new	11	26	14	7	16	14	18	10	37	9
CTGGAGTTGTTTAGAT	ref_5640_new	11	18	10	12	23	13	13	7	19	6
TTCTTCCGTCAGCTTT	ref_5640_new	10	30	22	16	31	14	28	21	33	14
TATGATCTCGGGAGTG	ref_5640_new	3	5	4	1	9	7	15	1	9	6
TCCTCTACCAGCCAGC	ref_5640_new	0	1	0	1	1	0	0	0	1	0
CGAATCAGTCGTTAGC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CTAACTGAACGACCGG	ref_5640_new	1	0	2	2	4	0	2	4	3	1
CGGGAATTCTAGAACA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GTGGTTGATATTTCCC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
ACCATCGACACAATCA	ref_5640_new	21	43	18	22	55	22	39	18	47	16
CCACCGCAAGTTAGAC	ref_5640_new	4	31	11	9	18	10	18	11	19	9
TGCCCTTCGAGATCCT	ref_5640_new	25	52	19	31	44	21	57	24	36	20
TTCACAGCGTTCCGTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CTCGTGCGAACATCCC	ref_5640_new	4	1	8	2	6	2	5	1	7	4
TGGTCCTCGCAACCCG	ref_5640_new	1	4	2	3	7	2	4	1	5	2
GTACTGGCTTGTTCAC	ref_5640_new	5	27	13	11	19	11	16	7	12	5
TTTGTTTTTCGTTTTC	ref_5640_new	58	62	58	28	60	38	69	37	87	52
AACTATAGTCGATCTA	ref_5640_new	0	1	0	0	0	0	0	0	0	1
CCCCATATGTGCGGTT	ref_5640_new	4	18	15	8	31	8	28	8	28	5
ATACTCTAAGGGCATG	ref_5640_new	10	16	2	5	17	5	15	6	18	2
TCTATGCCGACAGCAC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GCCTCTCATATTTTTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GAGACCGATATATAGG	ref_5640_new	0	0	0	0	0	0	0	0	0	0
ACAACTGGCTCGTTCC	ref_5640_new	7	7	2	2	10	2	8	0	5	3
AGCGGACGCTTCTATT	ref_5640_new	11	21	16	7	19	14	27	15	25	15
AGCTTTAGTTCTTCGG	ref_5640_new	38	109	55	51	73	45	87	50	80	35
ACCTGGTTTCCGTACC	ref_5640_new	0	0	0	0	0	1	0	0	1	0
ACGACGATTCCCTGAA	ref_5640_new	5	7	2	6	8	6	10	4	5	3
TGTCATGGCTCCGGTC	ref_5640_new	0	8	5	2	16	4	5	6	7	5
GTACCCGATAACTCTT	ref_5640_new	2	6	2	8	5	5	7	2	6	4
GCCCATTACTTTGATT	ref_5640_new	2	2	3	3	4	2	2	0	9	1
CCCTGTAGTTCCGACG	ref_5640_new	4	14	4	6	16	9	10	3	17	1
TAAATCCTAGGCGCGT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TATAGCTATCATGTCA	ref_5640_new	17	41	27	17	23	17	44	21	40	13
ACTCATCTCCCCACTT	ref_5640_new	3	9	6	4	22	6	22	4	9	3
GAGGGATCTACATATC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TCGGTCCACTAGATTT	ref_5640_new	4	17	14	4	20	1	16	6	23	6
CCATCGAGGGTTGGGG	ref_5640_new	15	14	10	5	20	7	21	13	15	10
AGGCTAGATTTGGTTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TATTCAAGTGTAACCG	ref_5640_new	8	3	9	7	10	2	6	3	15	4
GACCAATTGCTACCCA	ref_5640_new	12	25	12	3	10	5	14	7	19	3
CGCCGGTAACGGAAGA	ref_5640_new	17	30	22	18	35	24	57	14	45	22
GGGATGTGACGGGCCG	ref_5640_new	2	12	13	7	12	3	15	16	16	13
TAAGCCTCAGTCTGAG	ref_5640_new	3	3	4	3	8	3	11	4	5	3
GCTGTACTCAGCACTT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TGCGTTCCGGCAGAGT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TCACCGGAACTTTATT	ref_5640_new	24	43	30	21	37	24	43	20	51	23
ACGTGGTTGCACTTGA	ref_5640_new	8	14	7	14	20	9	23	6	19	14
GGTGGAATTGGTTAGT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
AGGTTCGGAAATACGA	ref_5640_new	6	13	10	13	9	11	18	3	15	5
GGCTTATAACATAAGG	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GCATATATATTGCAGC	ref_5640_new	5	16	9	6	10	8	14	5	17	8
GCGGGCTCTGGTCGCA	ref_5640_new	14	37	26	21	35	13	23	23	35	17
GTCGCTTATACTCTTC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
AGATTCCTGTTTTCAT	ref_5640_new	12	26	13	13	19	15	15	9	15	7
CGGTTCGCACATCGGA	ref_5640_new	14	16	21	5	16	14	32	4	19	9
AGTAATCGTCCTTATG	ref_5640_new	0	0	0	0	0	0	0	0	0	0
TCACGTAGAATGATCC	ref_5640_new	8	7	4	4	10	1	5	4	5	2
GGGGCAGTTCCCCCAT	ref_5640_new	41	60	35	31	61	23	55	36	50	22
TAATCCCCTCCGATGT	ref_5640_new	10	13	13	11	17	4	8	11	13	6
CATTCTCTTCCTAGAA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CACATTCAACACTCTA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CCTCGGGCATCTCCAT	ref_5640_new	18	49	17	17	39	19	42	37	33	21
GGATACGCGGCCTCCA	ref_5640_new	11	15	11	7	14	11	13	8	20	9
TCCAGAGAGCAATCTC	ref_5640_new	38	47	34	33	55	20	50	20	58	30
GTCAACGATATTTGGA	ref_5640_new	4	18	7	5	15	7	12	3	20	9
TACGTTTGACCGACAA	ref_5640_new	6	14	7	4	17	6	24	6	27	9
GTGATTGTTTGTCTTG	ref_5640_new	30	39	29	26	37	21	60	25	35	15
TACGTTATCGCAAATC	ref_5640_new	15	14	7	12	10	8	14	9	21	6
GAGCCCGCGGACAGCG	ref_5640_new	6	14	8	8	13	8	10	5	15	9
TTGTACACAGGTTACA	ref_5640_new	3	7	2	4	4	2	7	4	7	4
CTCAGTACTAAGTCCA	ref_5640_new	0	0	0	0	0	0	0	0	0	0
GTTTTACATCACGTAT	ref_5640_new	1	2	4	4	15	1	4	2	5	3
CATTCTCTCGTTCATC	ref_5640_new	0	0	0	0	0	0	0	0	0	0
ACGCACAAGTGTGGTT	ref_5640_new	23	34	23	20	34	20	38	26	45	16
AATCACATCGGAGACT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CTCATACTTTAATTCT	ref_5640_new	0	0	0	0	0	0	0	0	0	0
CTGGATTTGGCAGTCC	ref_5640_new	25	59	31	27	41	33	62	14	62	15
CCATAGACCAACAATT	ref_5640_new	2	4	1	0	2	0	2	0	0	0
TGGCGGCCTGCCTGGT	ref_5640_new	45	51	57	49	54	57	63	48	67	45
ATTATGGCCTGATCTC	ref_2112_RC	1	2	5	3	8	6	2	1	2	6
TCTGTACATGGTTGCG	ref_2112_RC	38	71	35	48	82	36	70	49	77	52
TATGTTCCCAAGCTTT	ref_2112_RC	20	26	30	19	11	25	29	20	22	21
TTTAGTGCAAACTTTT	ref_2112_RC	21	32	32	33	50	37	42	31	69	26
ACGCTATTGTAAGGGG	ref_2112_RC	130	172	147	102	191	115	182	120	183	110
CGGGGATTACGCTCTA	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TCTGTGTTTGATCCAA	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GTGTGACAAGGGGGCG	ref_2112_RC	103	150	124	96	163	110	162	68	181	89
CTCGGTGACTTATGAG	ref_2112_RC	7	16	8	15	7	9	13	7	9	8
TATTGGGGGCAGGAGT	ref_2112_RC	12	17	12	8	26	22	26	13	22	14
ATTCCCCGACGGCCGC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TGTGTGTGAGCGGTCG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCGGCGTTTCAC	ref_2112_RC	84	117	97	94	111	105	94	85	138	77
TGGTCAGTTCTCCGAT	ref_2112_RC	7	14	8	17	19	10	18	10	18	9
GGTTCCGCATAGTTTC	ref_2112_RC	12	9	18	19	21	6	15	5	13	7
CTCCATTATGGGTGCT	ref_2112_RC	17	25	26	16	23	16	19	19	32	12
AAAATAACACTGCCTT	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GTCGAGGGGTTTGTTG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
AGCGCTCCTTCATTTC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
ATGGATTCGAAAAATT	ref_2112_RC	28	23	27	22	31	23	21	20	30	16
ATCTCTATACTCTTCG	ref_2112_RC	5	10	6	5	5	7	7	3	8	4
ACTTGTTTTCATCAAA	ref_2112_RC	23	33	20	21	21	23	26	24	34	17
ATTACGGATTGGTGCT	ref_2112_RC	13	8	10	19	8	18	15	15	25	17
CCGCTCCTCGCGTTAC	ref_2112_RC	17	14	14	12	19	26	26	10	17	10
GGCGTCATTGCTCATG	ref_2112_RC	132	256	200	145	236	160	272	139	298	149
AATTAAATTGTCGTTC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
ACTCAAGTCCCTCGCG	ref_2112_RC	120	153	159	138	174	117	184	102	174	111
TCCTGGTGGGATGTAG	ref_2112_RC	20	37	24	21	41	20	35	10	28	18
CTTGGCTATCCCTACG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
ACATTGTTTTAGACGT	ref_2112_RC	0	8	1	3	3	2	7	5	4	6
GTTAACTATTTTGTCG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
CACCGTGCTGATCTAC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TTCCTGCTTACCTTTT	ref_2112_RC	6	55	7	12	65	13	80	14	50	14
CACCTTGGTACAATAT	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
CAGTAGTATGTTAGTC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GGCTGTGTTCTAGCTC	ref_2112_RC	4	1	0	1	6	0	4	3	3	2
TATCTCGCATTAGTTA	ref_2112_RC	14	23	24	10	17	7	25	19	18	17
GGTCGCTCGCTACGAA	ref_2112_RC	3	19	7	9	13	9	11	5	10	9
TGTCTGATCCGGGTGC	ref_2112_RC	92	124	109	79	160	91	129	86	162	99
ACGAGCGTTAGAGTCC	ref_2112_RC	117	141	163	103	166	123	149	93	162	101
AGCAGTGTATCGTAAT	ref_2112_RC	7	19	15	17	26	12	18	17	22	5
CGGTGTTCGATTGTAA	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
CGGTTATCCACTGAGG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GATCGATAGAGTAATA	ref_2112_RC	103	134	123	108	153	107	114	113	139	76
GTGTGGGTCTCGTTCG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GACATCTTCATTATTT	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
ACCGAGGGTATTTTAC	ref_2112_RC	47	33	44	36	54	44	42	32	48	30
CCTACTTTATACTAGA	ref_2112_RC	68	73	92	70	100	68	100	67	92	61
CACTCGCAGCATCGCC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GTCGGTCGGATAGGTC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
ACTCAAGACCCTCGCG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GCAGGGTTCCAGGTGG	ref_2112_RC	69	120	97	89	141	95	137	77	159	78
CCTGATAGCTACTTTT	ref_2112_RC	0	1	0	0	1	1	0	0	0	0
TATTGTTGTCATACTG	ref_2112_RC	12	21	23	18	31	15	18	18	23	16
CACTCGCTGCGGTCAA	ref_2112_RC	9	25	14	6	29	22	24	16	15	9
TCTACTGTACTCCCAC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
ACTCCTTGGCTCAGTC	ref_2112_RC	97	137	129	99	137	67	125	92	127	97
CAACGTTATGATCGCT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGTGCAGTGACA	ref_2112_RC	300	445	339	301	493	260	491	287	468	286
GACGCGCGATTGCGTT	ref_2112_RC	10	6	5	11	15	10	19	3	16	6
GCGAACCAAGTCCTCC	ref_2112_RC	29	30	46	20	32	39	25	28	28	29
GGGCTATGACGTGTGA	ref_2112_RC	17	10	8	15	14	10	15	11	20	11
CCGTGGTTTCTATTAT	ref_2112_RC	3	4	3	6	3	1	1	2	6	3
AGGACCAAGAGATTTC	ref_2112_RC	4	4	7	5	8	7	5	5	9	3
GTGCTTACTAAAACTA	ref_2112_RC	117	239	162	125	257	131	208	98	258	123
GTCCTTTAGCGTAGCG	ref_2112_RC	50	90	68	54	92	60	80	43	75	58
GAATTGGACCAACCCG	ref_2112_RC	7	12	5	14	5	9	7	6	20	5
TTCAGTTTATGTCCGT	ref_2112_RC	31	30	28	30	40	37	43	37	38	28
CAATCCAAACTGTTGA	ref_2112_RC	13	15	14	16	17	15	20	12	22	7
CTATCGGCAACAATTT	ref_2112_RC	14	33	23	7	22	20	19	13	35	15
GAGTTCAGAGTCGCGT	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGTGCAGTGTCA	ref_2112_RC	0	0	1	0	0	0	0	0	0	0
ATTCACGCTGACGGTC	ref_2112_RC	2	6	3	4	3	2	9	2	5	3
GGGAGGGCCTGCTGCT	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
AATAGTTGCGTTTTAT	ref_2112_RC	17	18	20	11	14	15	17	11	23	9
TATGTCTACCGTGGGA	ref_2112_RC	75	132	111	69	99	95	132	84	116	75
TTTTTCCTGTTAGGCA	ref_2112_RC	17	11	10	14	24	10	18	26	24	12
TAACCTTTCTACTGAC	ref_2112_RC	2	14	13	10	10	6	13	5	13	8
CTCGAGTCACTGTCCA	ref_2112_RC	5	7	5	7	4	0	7	1	8	8
CCTAGCTCTTCCAGAC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TAACCATCTGCGAAAG	ref_2112_RC	4	16	3	10	10	4	7	1	24	1
TACAGGGAACGTTACA	ref_2112_RC	10	10	7	14	15	9	15	17	20	7
AGCGCGTTATCCGTAT	ref_2112_RC	50	77	75	43	96	51	91	39	76	61
GTACATGCTCACTTTG	ref_2112_RC	8	14	12	8	11	10	20	11	25	8
ATGCGGTTGAAATTCT	ref_2112_RC	29	22	36	23	25	26	31	13	31	19
CGCATTGATCTGTTGA	ref_2112_RC	12	11	18	21	20	12	24	12	23	12
CACCAAGCACTATTGG	ref_2112_RC	25	19	19	13	17	14	27	20	27	9
TCCCGCTGCCTCTCGA	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GGAGGGTCGCAGTCTG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TGTGTCCAGCCTGAGG	ref_2112_RC	40	50	43	38	55	35	70	25	62	25
GATTATTTGATTAGAC	ref_2112_RC	1	5	2	4	8	4	6	4	4	1
TTCTCTAGCTTTACTT	ref_2112_RC	9	11	7	17	18	10	17	5	16	9
TGGTTCGGCTACGTAA	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
CTATATTTAGGTTGTT	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GAATGGCACTATGATG	ref_2112_RC	15	21	14	21	15	26	35	21	29	16
CTGGCGTACAGGGGTT	ref_2112_RC	10	12	13	11	21	11	23	6	16	8
GACCGTAGCGACTTGG	ref_2112_RC	21	32	24	16	37	18	31	19	27	15
AATGTAGAATGAAAGG	ref_2112_RC	8	13	9	3	8	6	7	5	8	10
TACGTTTCAACGAGAG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TGCCAACAATCTTCAC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
AGGGTCAGGGTTACCC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GCCCCGTAATTCAAGC	ref_2112_RC	0	0	0	0	0	0	0	0	0	1
GGACAGGATCGGATGA	ref_2112_RC	15	17	13	18	21	18	26	23	28	12
TTTTCGTGCAGTGCCA	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TCTTGTTACCCGGCCT	ref_2112_RC	47	96	57	50	93	47	67	50	75	41
TATTCGTGCAGTGACA	ref_2112_RC	0	0	0	0	0	1	0	0	0	0
ATTTTAATGTTCAGGC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
CTGCCATCTGTGACTG	ref_2112_RC	4	24	3	9	17	3	28	1	31	11
AACACATTAGTGGCCC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TAAAGGTCGGCGGGAA	ref_2112_RC	51	50	48	56	50	44	53	45	43	42
TCGTTCATAAGTTCAT	ref_2112_RC	10	16	14	6	14	9	9	2	13	7
TCTATTTAGTTCGCTG	ref_2112_RC	17	23	20	14	20	14	29	16	22	19
GGGATAGTTGTTTTCG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TGGTTTCAAATGTTGC	ref_2112_RC	13	16	12	12	15	15	10	12	16	6
TTTTTTTTGGAAATTG	ref_2112_RC	5	6	14	8	6	5	8	5	12	4
ATACTCGCCTGCTCCG	ref_2112_RC	6	10	10	7	14	6	16	8	16	9
CGACAGGGAAGTACAG	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
ATTTCGTGCAGTGACA	ref_2112_RC	0	0	0	0	0	0	0	0	0	1
GTGGACTACTTTAGCC	ref_2112_RC	21	32	38	25	47	26	58	27	26	24
CGACCGCCCTCCCAAT	ref_2112_RC	14	37	19	20	29	20	34	22	45	12
TGTTCTGTTCCCTTGA	ref_2112_RC	17	32	22	16	22	17	31	9	25	14
TCGTGATGAAATCTGT	ref_2112_RC	415	484	458	383	495	392	496	400	516	348
GCATCTTTAAGGATCC	ref_2112_RC	34	44	39	40	52	38	45	40	64	43
GCACCGTACGTCGAAC	ref_2112_RC	0	4	0	0	2	1	0	0	2	1
CTGATTAAAGCATATC	ref_2112_RC	6	12	10	13	11	9	10	14	5	7
GTTTGCAACGGTATGC	ref_2112_RC	62	78	64	61	72	50	73	57	71	42
TGTATTGAGCTTGCGG	ref_2112_RC	41	42	48	39	55	39	67	35	48	31
ATTGTTGCTAATTTCT	ref_2112_RC	57	49	58	58	50	64	52	46	55	54
ATATGCCCATGGTCAC	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TTGCTCTCGACATAAA	ref_2112_RC	76	91	120	74	90	80	110	76	112	60
CGTACGTATCGGAAAT	ref_2112_RC	8	9	9	7	16	5	18	10	12	5
CACTAACCTCCTCCCA	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
GAGAGCCCCTCATTTT	ref_2112_RC	0	0	0	0	0	0	0	0	0	0
TGTAATGGAATCTTTG	ref_2112_RC	52	64	57	52	58	45	75	48	72	52
GCTTCGGTGGCTTGCG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGGACCCTCATCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CACGCGGCGCGCGGCA	alt_2817_upstream	7	20	8	11	20	16	13	10	18	15
GTCAAGTCTCGTAATT	alt_2817_upstream	21	36	21	24	37	25	30	12	31	27
TCCCTGGCTCACTGAA	alt_2817_upstream	17	20	13	7	9	12	12	7	24	7
GTATACTCAAATCTTT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTCATTCAGAGTT	alt_2817_upstream	10	22	14	10	18	12	22	7	23	4
TCTGGCTTCAGACTGG	alt_2817_upstream	20	28	20	19	30	15	23	12	21	13
CTAGTTAGCTCACCCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGTAGTCAGTTCT	alt_2817_upstream	21	29	26	17	29	30	38	30	31	23
GTTGAGTGCTCGTCCA	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTTGCTTGTTGCT	alt_2817_upstream	48	74	59	54	78	61	95	40	76	41
ATGGCAGCCCCCTCCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GGATCATCAGGGGAGA	alt_2817_upstream	21	20	20	24	31	15	27	19	25	23
TTGGAGTCGGCCCGGA	alt_2817_upstream	18	25	22	14	25	11	21	18	37	19
TATGCATTTGACCCCG	alt_2817_upstream	160	271	233	166	303	168	273	158	276	155
CCCGTCTTCGATTTCG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGCTTGGGGTACT	alt_2817_upstream	38	85	52	58	84	52	72	35	97	31
CGGTCCCCGGAGTAAC	alt_2817_upstream	10	20	5	3	17	11	14	7	19	9
CTAGGTGATGACCTTA	alt_2817_upstream	23	31	16	15	33	19	28	18	35	18
TCACACAAGGTAAGTC	alt_2817_upstream	2	7	12	3	2	6	6	2	5	3
GTCATCTTCGCTGCAG	alt_2817_upstream	29	44	31	31	47	28	53	34	39	25
TCGGCTAACGCGTCCG	alt_2817_upstream	19	27	26	16	29	23	30	24	35	13
TAACTTTGGCAGCCAG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCCCACCGTAGTA	alt_2817_upstream	63	81	69	78	115	62	97	63	121	49
AAAAGATTAGCGAAGT	alt_2817_upstream	21	22	21	12	32	11	27	13	23	18
GGTCATGGTAAGTGAG	alt_2817_upstream	32	41	29	32	49	25	34	23	33	26
CCTGGGCCGGGGTATT	alt_2817_upstream	5	10	3	1	10	2	8	3	15	0
GTTTTTGTCCTGCATT	alt_2817_upstream	12	16	14	17	28	21	28	13	29	18
CGCGGCGCCTTCTTAC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTGTACACGGCACTGT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGTCTCAGGCGAC	alt_2817_upstream	5	29	6	19	21	6	25	8	19	12
AATCAGGTTTTGCAGT	alt_2817_upstream	2	1	0	0	0	0	2	0	3	1
TTGCGCTGGCAAGCTA	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGAGAGTCTAATC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TCATTAGGAGTAAAAC	alt_2817_upstream	3	12	13	6	13	12	11	9	10	7
TTGTTACACTGGGAAT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TCTGGATTTTATTGTA	alt_2817_upstream	83	104	75	73	140	76	120	67	107	72
TTGTACGCGAGAGCGG	alt_2817_upstream	21	26	29	23	33	12	35	15	31	20
CTGCAAGCTCATCTAA	alt_2817_upstream	178	292	257	193	339	218	363	160	407	156
AGTTTCGAATACCGGC	alt_2817_upstream	4	4	0	0	6	3	3	0	5	2
GTTAACCTATTATTTC	alt_2817_upstream	10	12	6	15	14	7	15	14	19	12
TGATCCACAGGGGTGC	alt_2817_upstream	6	3	13	5	4	4	7	2	8	4
TATAACGGTAAATCGT	alt_2817_upstream	7	9	5	5	10	5	12	2	12	6
CTGTGTTCTTTCTGTC	alt_2817_upstream	25	44	32	29	40	17	38	23	49	21
AATTTCATATACCGTC	alt_2817_upstream	16	15	28	13	27	16	15	17	19	11
TCCCTCTTTTGCCTAA	alt_2817_upstream	24	63	23	28	73	22	77	24	67	19
CTTCATCTCTGTCCTC	alt_2817_upstream	9	8	10	7	6	9	15	9	6	9
GCGGCTGAACATGTCT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGCACAATTGCAT	alt_2817_upstream	24	41	31	16	42	19	55	20	48	23
AATTCGGATGCAATTT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GAGATTGCATATGCAG	alt_2817_upstream	15	14	13	8	19	10	11	16	22	10
CGCTAATGCACTGGCG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
ACATTTCTGCTTAAGC	alt_2817_upstream	25	34	24	32	36	32	46	32	38	25
AAACCGCCTGCAGAGC	alt_2817_upstream	21	39	32	15	35	25	22	17	30	19
CAGTATCTATTCTGTA	alt_2817_upstream	42	64	71	49	93	60	87	53	71	44
AGAGATGTGTCCTTAG	alt_2817_upstream	16	24	10	15	14	12	22	10	18	6
CGGGCATTACATGTCC	alt_2817_upstream	44	63	43	41	63	40	48	37	59	31
ACTTGACCATATATTA	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TCAATCATTTCATTTC	alt_2817_upstream	1	1	3	3	2	1	4	1	2	2
TATTTCAACGTACCGT	alt_2817_upstream	9	44	27	21	30	26	40	11	38	14
ATAAGGGCGAGCTTCT	alt_2817_upstream	22	39	27	23	36	29	42	25	39	22
TGCGGAAACTGAGGGG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TGTGACGGTCGGTTTA	alt_2817_upstream	8	31	20	23	31	18	27	11	34	13
AGCAGATTCGTACGCA	alt_2817_upstream	1	1	4	5	1	2	7	1	5	5
TAGAGACTGGCAGCTT	alt_2817_upstream	0	0	0	0	0	1	1	0	1	1
GTTTATTATGTTATCT	alt_2817_upstream	4	4	6	2	4	5	4	1	9	14
TGACACCCTACTTTGG	alt_2817_upstream	6	11	7	11	9	6	8	6	12	4
CCTTCAAGGAAATTTT	alt_2817_upstream	59	179	71	86	178	57	163	49	214	59
TTTCACTAGGAATTAG	alt_2817_upstream	19	22	19	17	28	11	31	17	29	12
GTCTCGGTCACAGCCA	alt_2817_upstream	23	25	16	15	28	15	36	18	38	22
GCAAAGTCCCGAACGG	alt_2817_upstream	17	22	21	12	33	24	24	21	16	15
CAGCGGGGTACACGGT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCAGAGCTTTAGG	alt_2817_upstream	25	25	23	23	30	22	31	20	29	26
GATCCGGCGGGCGGTG	alt_2817_upstream	24	37	35	25	45	19	37	30	51	33
ACTTGTGGATAGAAAG	alt_2817_upstream	25	17	33	20	20	18	30	13	39	17
TATTGGAAGGGAGCTC	alt_2817_upstream	33	46	39	34	51	23	50	30	37	19
TTTCATTCTGTATCCA	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTATATTGTTTTATCG	alt_2817_upstream	27	48	36	54	57	20	61	29	68	31
GTGGGACCCCGTCTCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGACGTAATATAG	alt_2817_upstream	22	29	37	29	35	37	45	21	47	19
AAACGTTGGCCGTCTC	alt_2817_upstream	1	5	5	0	2	1	1	1	4	3
GCTTCCTTCCTGGGAC	alt_2817_upstream	28	56	39	43	58	29	43	25	49	23
CTTCAACCGGGAGAGT	alt_2817_upstream	98	145	107	112	159	99	135	95	134	105
CCGTTGGAAGCCGTGT	alt_2817_upstream	19	38	35	29	33	23	37	15	48	16
ACGGGAGAAGGCTATA	alt_2817_upstream	44	40	35	33	51	47	53	34	49	42
GCATTCCATACCGCTC	alt_2817_upstream	65	105	61	69	118	70	120	63	106	61
GGCTGTTTCCTCTATG	ref_2817_upstream	52	95	81	50	92	59	93	52	107	61
CCAACATTGTAAGCAC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTGCGCGTAGTCA	alt_2817_upstream	16	7	12	11	13	10	19	6	28	11
TCCGTGAGTAAGACGT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CCCTAATTCCTTCGAG	alt_2817_upstream	19	39	23	16	36	16	31	15	28	18
AAGGGCAAGTATAGTG	alt_2817_upstream	31	34	22	25	32	23	46	23	29	29
GATGTCCTACTTTAAT	alt_2817_upstream	5	7	2	3	6	4	9	3	10	5
ATGGCAGACCCCTCCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGTGCATTGGGAG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGGGCCGTCTAC	alt_2817_upstream	19	43	32	26	35	27	50	23	43	18
ACTCTTTGCTTAGGCG	alt_2817_upstream	8	16	10	8	4	6	9	3	12	5
GACTGCGTCATTGTTG	alt_2817_upstream	11	9	16	16	24	6	24	8	15	6
CATCAGGGCGGACGGT	ref_2817_upstream	12	29	21	19	29	23	37	29	33	23
CGATAACGCCGAGCAT	alt_2817_upstream	43	56	51	38	69	28	60	34	62	34
CGAGATAAGTTTGTTA	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCGATATTTCTCG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TAAAAGTAGAAACGTT	alt_2817_upstream	31	55	47	31	25	36	33	21	61	24
CGACGATGTAGGGCGT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCAATGGGGGAC	alt_2817_upstream	3	10	13	5	8	4	14	6	17	6
ATCTATTTGATATCCT	alt_2817_upstream	30	34	34	31	53	35	57	22	51	33
CCCCCCGCCCTCATGT	alt_2817_upstream	45	72	32	43	79	36	75	42	81	38
GCGACAAGCTGACGTA	alt_2817_upstream	10	5	5	8	6	5	5	9	8	4
TTGCTAAGGCGTTGGT	alt_2817_upstream	19	36	26	21	25	24	39	12	25	26
TTTTTTATAGTTTTCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTAGTTTAAGGCTCGC	alt_2817_upstream	10	20	15	8	24	8	18	8	26	7
AGCCCGATGCCGACCT	alt_2817_upstream	12	16	13	14	23	9	8	10	12	11
ATGAAGCTTTCGGTGT	alt_2817_upstream	6	10	5	7	13	8	5	7	6	2
AGGGGCGTTTTGGCCT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TCCACATGTCTCTGCA	alt_2817_upstream	73	78	60	60	85	52	102	69	89	56
CGTTTTTGGAGCTAAA	alt_2817_upstream	34	50	30	37	54	26	46	33	55	30
TTTGACTTACATCCAG	alt_2817_upstream	9	8	7	7	8	3	13	11	23	6
CAAAGCACTTACGTTC	alt_2817_upstream	5	2	3	3	2	1	3	1	2	0
CTAGCCTTGAGACTTT	alt_2817_upstream	4	3	4	2	6	6	7	8	16	3
TCACGTAGTCAGGGCC	alt_2817_upstream	2	7	4	2	13	3	7	0	8	2
CCCCGATCCGTCCTCT	alt_2817_upstream	17	17	19	26	14	21	33	16	24	11
TATAATGTAAAATCGT	alt_2817_upstream	6	11	9	12	16	7	17	9	9	5
GAGATCCGGCTTACTG	alt_2817_upstream	4	7	1	8	7	9	8	2	7	1
GCACAAGGTATGGCGT	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCACATGGTCTAC	alt_2817_upstream	82	117	115	96	118	74	122	80	145	69
GTAGATGCAGTTAGAC	alt_2817_upstream	19	38	15	21	34	11	29	21	39	18
ATCTCAGGTTACACGA	alt_2817_upstream	4	5	7	8	6	3	8	7	5	7
TATTCGTCCCGTTGGA	ref_2817_upstream	124	154	111	112	146	90	146	78	149	85
GTATGAGACAGCCAAC	alt_2817_upstream	24	39	37	28	46	24	41	25	43	19
CAGCCGGGGTAAGCCA	alt_2817_upstream	30	47	49	49	69	29	78	44	76	38
CGGTCGGTTACGCCCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTTAACGCTAAGT	alt_2817_upstream	113	149	109	86	171	106	160	90	151	91
GGAGGTTAGTTTCCTT	alt_2817_upstream	1	0	1	3	3	5	2	2	5	0
TTCTTGTACAGGCGGC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
GTAGAGGTCTGGCTTT	alt_2817_upstream	18	35	20	33	25	24	24	23	49	26
ACTCTTCATATACTGC	alt_2817_upstream	14	10	6	5	6	10	9	4	8	6
TGTCCAGTTGCCAAGG	ref_2817_upstream	207	301	241	175	323	212	357	175	370	164
CCATACAGTTATTTTG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAACAGAGTTGAG	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGGTGTGGTGAAG	alt_2817_upstream	1	3	3	3	6	3	2	2	3	4
ACGTACTCGAGGCTAA	alt_2817_upstream	11	18	23	14	37	29	30	25	19	24
ACACTTGGGTACAATA	alt_2817_upstream	26	37	26	23	57	25	30	28	48	27
ATAGTCGCAAGTTTAA	alt_2817_upstream	10	24	20	8	19	16	31	12	22	11
TGGTGTTTATGCTTGT	alt_2817_upstream	9	28	15	20	19	11	29	20	25	12
ATCAGGTATACCCGCC	alt_2817_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCTCGCAGTTTCA	ref_5998_new	10	9	8	10	13	14	12	6	18	8
GCTACCCGTCAAAACG	ref_5998_new	10	28	20	13	25	6	27	16	24	17
AGACATCAAGTGTACT	ref_5998_new	48	39	42	46	39	33	45	39	50	33
CAACCTTAGGGCGTTT	ref_5998_new	0	0	0	0	0	0	0	0	0	0
AGAGCGTTCTCTTGTG	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TCGCTCAACTTCTGAC	ref_5998_new	30	65	39	32	45	28	75	29	79	20
GGTTTTTCTGGGATCT	ref_5998_new	18	32	21	30	26	25	18	19	25	22
CGCCATGTACTCCCAC	ref_5998_new	55	55	69	57	55	39	54	47	48	55
ACCGCTCTTCGTTAAG	ref_5998_new	18	27	33	29	33	31	34	29	43	23
CAACTTCCGCATCGCA	ref_5998_new	38	59	80	56	49	44	51	59	51	55
ATCCGATCGTCCACGG	ref_5998_new	0	0	0	0	0	0	0	0	0	0
ACAAGATCCAGTATAT	ref_5998_new	15	17	9	17	26	14	22	11	18	3
GTCGTCCGCTAGTCCT	ref_5998_new	13	18	13	16	18	5	12	11	12	16
TGTCTGTTTCTACCTA	ref_5998_new	27	39	47	39	42	26	38	33	42	31
TATGTATGTTCTATGT	ref_5998_new	0	0	0	0	0	0	0	0	0	0
GGTCACCGGTTGAGCC	ref_5998_new	172	268	237	201	286	188	276	197	304	187
CCTAGGAAGGTCTTGG	ref_5998_new	0	0	0	0	0	0	0	0	0	0
GCGAGGTATTATTCTC	ref_5998_new	36	22	37	34	42	39	44	37	41	19
GAGCGAGAACAGTTGA	ref_5998_new	0	0	0	0	0	0	0	0	0	0
GGTTAACAAGCTTCGA	ref_5998_new	22	33	29	27	40	19	25	32	23	19
CCGGGCAACTGCTTTT	ref_5998_new	4	14	3	3	17	5	6	5	8	5
TAGTCCCCGCGTAGAT	alt_5998_new	0	0	0	0	0	0	0	0	0	0
TATTGTCAACTCAGTT	ref_5998_new	13	29	22	15	22	22	24	17	27	23
CGGTCGACTGGGTTCC	ref_5998_new	19	53	19	20	56	20	54	22	45	13
CCCATTGAGTTGTGCT	ref_5998_new	14	35	15	12	28	15	37	13	39	12
GTAATGTGAACGGTCG	ref_5998_new	43	33	36	52	30	45	32	38	34	23
TGTTTACAGATCGTGA	ref_5998_new	0	0	0	0	0	0	0	0	0	0
GTACAACAATAAATAT	ref_5998_new	2	6	3	3	6	5	4	4	7	2
ATTCCCCCCCGTGCAC	alt_5998_new	53	39	33	38	28	35	29	38	34	35
ACGGAGCGGACGCACT	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TGCGACATTTAGTTAA	alt_5998_new	40	29	48	34	38	25	33	29	24	32
AGGCGCGCGCGATAAT	ref_5998_new	94	81	156	103	86	91	88	81	97	103
GTCTTAGTTTCCATTA	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TTTGTATTGGTTCCTA	ref_5998_new	35	30	47	33	33	39	46	35	44	34
CCAGTGCTTGGCAATG	ref_5998_new	8	16	14	13	14	9	18	10	16	9
TCTTCGTTGGAATTCG	ref_5998_new	9	8	17	20	7	7	7	11	8	12
TCTATATACCTCCGTA	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TTGTCAGGCCTGCTCC	ref_5998_new	0	0	0	0	0	0	0	0	0	0
AAGAACCCTTTCGCAG	ref_5998_new	10	19	14	10	18	11	20	9	20	17
TCTGCTTTTCTCCCTG	ref_5998_new	18	17	18	15	19	12	21	17	28	11
TTTTGGAGGATAGTAA	ref_5998_new	23	28	27	21	23	20	18	25	32	20
GAATCCACTTTCTGCC	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TATTGTACAATGAAAT	ref_5998_new	7	20	26	12	8	17	14	15	23	12
TGCGCCATTTAGAGAC	ref_5998_new	27	26	39	34	31	22	37	27	48	20
TCTGGTTGTCCTCCTG	ref_5998_new	4	13	16	10	13	7	10	4	11	8
CCTTTGGGGAGATTGG	ref_5998_new	7	13	6	7	11	4	19	3	18	7
TGTAGCCCTCTGGTAG	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TGGCGCCGAGGACCTG	ref_5998_new	185	206	217	210	205	169	194	181	203	134
CCCCTCGGCCTGTGTG	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TTTGATTTATCGTAAG	ref_5998_new	39	50	56	61	54	53	48	46	57	54
TGTGCGTCTAGGGGGA	ref_5998_new	22	30	35	30	22	17	31	22	23	30
ATGATGTCTTTCGGCT	ref_5998_new	0	0	0	0	0	0	0	0	0	0
CCGAGGTCGAGTAACC	ref_5998_new	36	25	33	27	32	33	51	32	33	20
TCTAGGTCATGTTTTT	ref_5998_new	18	18	17	24	10	13	15	5	18	13
CTGTTGAGGATAACCT	ref_5998_new	0	0	0	0	0	0	0	0	0	0
TGTACGTGGAACGGCG	ref_5998_new	17	17	22	9	11	9	19	8	8	7
TAACGCGGCGGCCCAT	alt_5998_new	197	182	216	193	172	186	176	174	183	188
TGCATGCTAGCGCATC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGTGTCCTGGCCT	alt_3478_upstream	18	28	27	28	21	10	30	18	32	14
GTTTATCGTGCGTTGA	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
AATTGTTGTAAAGATG	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GAGTGTAGCAAGGGTA	alt_3478_upstream	116	119	154	147	140	107	149	95	192	118
GATGGCTTATGTGTGT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCGCTGGAATTGT	alt_3478_upstream	11	15	13	17	12	11	18	11	11	11
ATACTTATTCGGCTCT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CAGCCCAGGCATGACA	alt_3478_upstream	7	17	8	10	12	7	19	11	17	8
CGGCCGAATCATTTGT	alt_3478_upstream	5	11	12	6	12	8	16	9	14	6
AATGTAACTCGGCCTG	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CTGGGAAATATTCGGT	alt_3478_upstream	29	28	50	25	32	31	37	36	42	16
CCTGTTAACATATTAT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GGGCAATCAAGAATGG	ref_3478_upstream	32	20	26	23	22	19	24	23	27	26
GGGACATCAACGGGTG	ref_3478_upstream	93	91	105	106	108	95	93	81	94	82
TGTAACCGGGATAGAC	alt_3478_upstream	154	154	206	163	194	151	179	145	197	112
AGGAGCGTAAAATGAT	alt_3478_upstream	4	10	5	4	4	7	8	5	5	4
AATCTCTCATTGTAAC	alt_3478_upstream	15	11	13	7	14	13	6	7	13	16
AGTTTCCCCACCATCG	alt_3478_upstream	78	70	79	59	87	55	85	65	75	53
CAGTCAGACGTATCCT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GGAAAATACAAAATAT	alt_3478_upstream	4	4	4	0	6	0	1	2	7	5
AATGCAGTGGAACGCG	alt_3478_upstream	102	97	90	87	112	92	109	74	81	63
AATACACTCGTTTTCT	alt_3478_upstream	24	56	56	30	33	31	40	27	63	27
CGTTGCTAAGTTTATT	alt_3478_upstream	2	0	0	3	3	5	1	2	4	1
TCCGTTTATGCTCGGT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTGATCCTCTGCG	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGGATTCTGGTTA	alt_3478_upstream	9	12	7	15	15	12	12	9	17	6
GAATCAGCCGAGCGTA	alt_3478_upstream	6	25	9	10	22	10	28	6	37	6
GTGCGGCTCCTTTGTC	alt_3478_upstream	20	11	7	3	10	5	19	7	12	5
CCTTTAGAGCGGTTTG	ref_3478_upstream	57	76	70	66	85	43	94	62	102	53
GTGGCCCCTCATGCGT	alt_3478_upstream	3	7	4	4	8	2	4	5	1	0
TGGTTCGTCTTGGGGT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CGTACTACCACAGTCT	alt_3478_upstream	5	12	7	8	5	6	5	6	8	4
AGAAGCTGACTTATTG	alt_3478_upstream	100	122	122	113	111	86	150	84	132	96
TAATTTTGACCCGTTT	alt_3478_upstream	268	268	332	285	255	309	281	209	279	232
CTCTTTTGTTCTTACG	alt_3478_upstream	236	210	268	243	192	215	233	206	241	198
TATATCGTGAGAGCCT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTATCAATTATC	ref_3478_upstream	15	25	19	17	17	9	13	12	16	15
GCGAAGAAGACTACTC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTCATACATGCACATT	alt_3478_upstream	29	57	17	28	30	13	40	19	32	19
TGTATGTCACTTTCGT	alt_3478_upstream	7	3	5	7	8	7	6	9	7	4
AATTTCTGCTTCTTGT	alt_3478_upstream	11	8	12	10	8	7	8	10	2	11
GATGTTGGACCCTCTT	alt_3478_upstream	75	98	73	64	100	72	109	67	107	57
TTATTTGTTGCTCGCC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTTTCCGCGAGCA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGGGTGCTTCGAC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCGGTAAGCATAT	alt_3478_upstream	72	67	78	79	83	64	90	62	82	66
GCCTTGCTGTCCTGTG	alt_3478_upstream	30	31	28	19	44	37	34	23	38	17
GCAACTACCTATGAGT	alt_3478_upstream	7	12	10	11	17	10	21	16	18	6
TTGTCTTGGCTCCGTT	alt_3478_upstream	26	32	40	22	23	20	28	17	26	20
TCGTAATAGGCACGTC	alt_3478_upstream	4	8	5	7	4	0	8	3	4	2
TCACATCCGGGGCTTC	alt_3478_upstream	33	35	49	30	21	23	29	31	30	27
TTTGGACTAATACTTG	alt_3478_upstream	20	18	20	19	28	18	26	14	30	12
CATGGACTTTGTTTTG	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GAGGATGAGCATAATA	alt_3478_upstream	19	8	20	15	17	11	10	14	11	15
GGTTGGCGATTTAGAA	alt_3478_upstream	28	20	48	33	37	36	42	29	43	28
GGTTATTTCCTAGGCC	alt_3478_upstream	29	31	35	33	30	21	42	21	44	31
AGACCGTTCTGACACA	alt_3478_upstream	31	37	31	22	29	20	39	22	32	21
CGAGGACCCTTCTACC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TATACGCTTTTAAGTT	alt_3478_upstream	27	31	25	39	37	21	31	28	41	30
TTGACGTGGATTTGAC	alt_3478_upstream	83	90	77	75	86	73	81	64	111	91
AATCCAAACTGGAGGG	alt_3478_upstream	31	22	34	35	39	28	29	32	39	29
TTTTCACATCGCATAA	alt_3478_upstream	65	70	99	81	92	74	75	68	109	69
GGCTTCGGATTGTAAA	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GATTGAAAGTCAGTGG	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CACAGCCCAGGTTCGG	alt_3478_upstream	15	12	34	24	4	17	17	17	13	15
GGCATCTTTCGTCATT	alt_3478_upstream	10	10	13	10	15	13	16	10	15	14
TCGACGACATGTCCCA	alt_3478_upstream	13	6	3	10	14	9	6	5	9	5
ACCTCGTGAATCAGCT	alt_3478_upstream	8	16	14	10	11	6	2	9	10	11
TTCGTGTGTGTCGACT	alt_3478_upstream	59	81	72	61	105	47	105	62	104	75
TTCTTATTTATTATGA	alt_3478_upstream	29	30	29	37	32	31	29	24	24	35
TTGGCAGGCGCTTGTG	alt_3478_upstream	5	10	11	5	7	10	18	11	6	6
GATGTCAGGATAAGAT	alt_3478_upstream	5	13	12	6	6	4	10	7	4	7
TTCACATCCGTTGGGC	alt_3478_upstream	16	35	30	20	63	25	41	20	59	16
GGCTGTTTAGCCAAGG	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GCGGTTTTCGGCCTGA	alt_3478_upstream	173	174	210	179	179	154	202	166	193	158
GATCCGTAAACTGCAA	alt_3478_upstream	20	24	31	35	27	30	27	15	31	27
TTAAGCATTAAATTTT	alt_3478_upstream	11	16	21	19	14	8	13	15	16	8
GTAAACCGCTCGAGGC	alt_3478_upstream	36	24	38	37	28	25	32	31	24	34
CCCGGTTGTAGTCCGC	alt_3478_upstream	24	28	27	18	31	16	25	24	30	17
ACCTTCGCTAGTCAAA	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CATTTATTTAAACGCG	alt_3478_upstream	14	9	14	15	11	9	7	9	9	7
GCGTCAAAGCTCCTAA	alt_3478_upstream	31	37	37	39	48	40	49	26	47	32
TAAAGACTGCGAGCGG	alt_3478_upstream	49	57	40	34	69	37	56	41	56	45
GATTAGTGTGAGTCTG	alt_3478_upstream	20	27	16	17	19	15	31	16	27	14
TTTGTTTTTAGGTATC	alt_3478_upstream	9	14	20	12	10	16	17	21	34	24
TCTAGGTGTGCCCTGT	alt_3478_upstream	16	26	18	20	26	15	31	22	23	20
TTCGCCTAAAGCTTCA	ref_3478_upstream	39	52	45	40	52	44	61	47	62	40
CCAAAGGCATTCCTTA	alt_3478_upstream	29	18	20	13	24	23	15	17	24	18
ATTAAACCTTTAATAT	alt_3478_upstream	21	13	15	16	26	19	25	20	28	12
TGCCGATTATCTTCTT	alt_3478_upstream	65	65	67	58	52	49	68	45	61	63
CTGGACCTGTATTAGC	alt_3478_upstream	6	7	12	4	5	4	13	6	8	3
CCGAGGGTATTTCGTG	alt_3478_upstream	46	37	56	40	54	43	45	35	66	52
TACTTCGAAGGCTAGA	alt_3478_upstream	3	9	4	6	10	4	9	5	1	2
GGCTTCGTACCGGCTC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTTCGTATCCGGA	alt_3478_upstream	31	27	24	25	21	23	26	17	35	19
TGCTATCTATTTTTCC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CGACAATCAGAGGGTT	ref_3478_upstream	31	33	26	36	34	21	41	42	49	32
GTTGGCCCGTGGGCTT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGTGCATGTAGGG	alt_3478_upstream	41	54	44	49	57	37	61	61	49	37
GGCCAGTCGCTCCTCC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GGCACTCTAATGTCTA	alt_3478_upstream	29	27	29	17	24	19	13	17	38	19
TTATGGGCCTCAGTAA	alt_3478_upstream	15	9	14	14	16	17	18	7	19	11
AGCGCAACGAAATATT	alt_3478_upstream	11	12	11	11	12	6	24	11	15	14
GTGTCATCTCGATGAA	alt_3478_upstream	12	14	27	13	20	16	20	13	9	7
TATATGGGTGTTCCGA	alt_3478_upstream	32	31	30	37	36	21	34	27	34	15
CGCCATCATAATTACG	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGTCCCAAAGACT	alt_3478_upstream	30	33	27	17	27	26	37	19	39	34
GTCGTTTTATTACTCG	alt_3478_upstream	30	43	43	25	42	23	52	23	49	24
GTGGTACTATAGGAAG	alt_3478_upstream	4	6	3	5	8	5	11	2	6	3
CCATTTGCCCCTAACT	alt_3478_upstream	9	27	5	9	22	8	21	10	16	4
CGCTCCCCGGACCTTT	alt_3478_upstream	0	0	0	0	1	0	2	0	0	0
ATTTCTTTGCAAACGT	alt_3478_upstream	23	19	17	17	29	22	28	19	37	17
TGGTACCTGTTAATTT	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TCTATTCTGCTACATA	alt_3478_upstream	60	66	66	48	83	47	64	67	66	39
CTTTTTATATTTGATA	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GACTATGCGTATGACG	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
CATAAGCGTTCCTTAA	alt_3478_upstream	25	21	19	12	17	16	28	17	32	13
TATCACAGGGTGTAAC	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGCGTGGACCTGG	alt_3478_upstream	6	9	7	9	2	8	5	3	5	4
TGCCGAGAAGTCTAGA	alt_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTCTGCAGTTTTG	alt_3478_upstream	14	14	22	14	20	9	20	18	17	18
TTCCTAGCAATCTGTT	alt_3478_upstream	15	26	23	28	25	17	28	18	24	34
AAGCTAGTACACTCAT	alt_3478_upstream	0	2	0	0	3	0	0	0	0	0
GCTACAAGTTGATGTA	alt_3478_upstream	8	6	12	4	4	4	7	6	4	4
GCTCCGAAACGGACAC	alt_1616_upstream	15	11	18	21	22	15	15	18	16	19
CGATTCGAGCTCGTCA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GCGGACGGACATAGCA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GCTAACGTTACTGTGG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCGTACGTAATAT	alt_1616_upstream	54	41	59	35	54	36	48	30	36	38
TTTTTTCACTGTGGTT	ref_1616_upstream	58	85	56	68	73	64	74	63	88	45
TAATTTGAGCGTATAG	alt_1616_upstream	17	20	41	27	7	9	25	20	15	18
CCTGGGCCGTTGTCTG	alt_1616_upstream	31	34	20	25	37	30	31	32	32	24
GTACTTGGGGCTCCCG	alt_1616_upstream	26	39	42	34	33	29	42	30	41	30
TAATGGAGACCTTCTG	alt_1616_upstream	100	76	87	85	63	70	71	100	73	71
ACTAAAATGCACTTGC	alt_1616_upstream	13	9	8	11	10	8	12	13	11	7
CTTTGCAAAAAGTTAC	alt_1616_upstream	75	68	77	74	71	68	67	68	66	62
CCGGAAAATTTCCTGT	alt_1616_upstream	17	15	22	10	17	10	17	13	15	12
CTGCACGAGGACGATA	alt_1616_upstream	27	32	34	25	19	21	28	31	19	40
TTAGGCTCCTTGTACT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GCCATGTTTTTACATT	alt_1616_upstream	16	25	30	24	16	16	23	22	24	16
TGCAATTTCAAATCAT	alt_1616_upstream	53	53	73	76	61	54	70	52	57	47
CGGAGCAGTAGTGGTG	alt_1616_upstream	6	6	9	5	4	6	6	2	7	6
GACATTGTCGGTCTTC	alt_1616_upstream	6	9	10	2	9	4	9	8	8	10
CGACATGGTGCCACGT	alt_1616_upstream	18	7	23	19	17	19	21	17	15	18
GACTCTGTGACTTTGA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGTGGAATATTTG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTAGTGTGAGTA	alt_1616_upstream	19	42	31	22	21	35	30	35	27	27
TCTTTGGTTACTACTT	alt_1616_upstream	6	3	3	8	8	2	3	4	6	6
CAGAATCGAGCCAATC	alt_1616_upstream	116	96	127	108	109	100	116	105	134	116
GTCGTGAATCTGACTG	alt_1616_upstream	14	7	26	24	12	12	12	15	13	14
CGGTGTCTGAACTGTA	alt_1616_upstream	36	19	41	35	38	32	28	28	47	40
AGAGCAGCGAAACCAG	alt_1616_upstream	1	6	9	9	6	4	3	1	9	2
AAAATTTTGCAGGGAC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTGCACAAGACC	alt_1616_upstream	22	21	29	26	22	19	34	21	22	20
CCTTTCGTCCAAGGGA	alt_1616_upstream	2	3	3	9	2	1	3	1	4	1
TGTTTCTTGCCTAAGA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GACATTTCTCGATGCA	alt_1616_upstream	34	31	40	49	35	40	37	33	33	33
TTAGCCAACCATGTTA	alt_1616_upstream	31	27	41	37	38	27	26	21	28	33
GGGCTATCACTCCCAT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGAGCATATCTCT	alt_1616_upstream	23	19	16	18	29	23	16	26	24	23
TTTTGTGAACCGTTCT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCCTCACTGTTGC	alt_1616_upstream	26	38	37	24	39	25	50	28	43	23
TTAGTGTAACCCGTTA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCGTTAAGGTCT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CAACATGCGCATGCGC	alt_1616_upstream	23	19	18	17	14	18	12	17	22	22
CCGCACATCATACATC	alt_1616_upstream	15	13	14	16	13	8	9	19	18	10
GGGGCCAGGTTACTAC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GCGACACGCATCGAAC	alt_1616_upstream	76	77	117	85	69	84	79	79	98	84
GCTAATGTCTCTATTA	alt_1616_upstream	55	51	60	54	38	44	44	51	44	46
TGAGAGAGGGAGAACC	alt_1616_upstream	31	43	29	34	37	31	42	26	41	39
CCCTTTTCCACATGCT	alt_1616_upstream	1	2	4	2	0	5	5	0	1	2
CGGTCCAGGGATTTAA	alt_1616_upstream	31	39	46	33	34	24	26	27	27	30
CATAAGTATCGGGAAC	alt_1616_upstream	47	57	58	67	77	42	57	59	82	47
CCTTTTTTTTACCCAA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTCCTAGTCCAGC	ref_1616_upstream	134	177	171	140	202	139	195	116	192	132
ATACTACCTGCGAGTT	alt_1616_upstream	127	122	120	127	119	108	177	123	135	124
ATGTGTGGCCTATTTA	alt_1616_upstream	67	42	57	48	44	39	45	37	55	41
CCGTGTTATTTACATT	alt_1616_upstream	0	8	5	1	6	2	8	3	1	3
TATTGAGGGATGCTAC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TCTTACCTCTTTTCAG	alt_1616_upstream	5	12	5	5	13	3	9	1	6	4
TTGCGCTTCTGTCTCT	alt_1616_upstream	83	50	68	53	57	53	53	52	64	58
CACCCTCTCTTCGCTT	alt_1616_upstream	44	35	43	46	37	31	35	34	27	38
ATGGCCTTCGCACATC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTGTCGTAGTTCT	alt_1616_upstream	12	9	12	11	6	9	17	5	10	10
GATACACTAGGGCCTG	alt_1616_upstream	12	4	10	11	8	5	7	8	8	6
GCCGCACAATATTAAC	alt_1616_upstream	2	2	2	6	1	4	8	6	1	2
TTTCCAATCTGCTAGG	alt_1616_upstream	10	8	15	7	13	9	7	8	8	2
GCTGCTTTGGACTCGA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTGGGATTCACAA	alt_1616_upstream	62	46	82	93	57	70	44	60	58	64
AGTTAGCCCATTGATC	alt_1616_upstream	10	2	5	8	4	2	8	6	6	4
AATTACGTCACGTCCA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCAATCTTACCAT	alt_1616_upstream	10	25	19	18	34	15	38	16	30	15
TGTGCACTTTAGCTTC	alt_1616_upstream	4	1	3	5	6	2	2	2	4	1
CTCGCAGGGTTTAGGT	alt_1616_upstream	69	61	86	68	74	61	65	53	63	58
TTAAGGTCACGGAGTG	alt_1616_upstream	115	111	132	119	120	101	103	103	146	105
TTACCTCGCTACACAT	alt_1616_upstream	12	28	11	21	27	7	18	16	25	12
CTGGACAGCGTACATT	alt_1616_upstream	114	169	167	153	160	144	161	129	154	138
AAATAGCAATGTTTCA	alt_1616_upstream	21	19	25	38	31	21	24	25	22	16
AGGTTTCGGTATACAA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGTATCATACGCT	alt_1616_upstream	6	5	2	5	3	5	2	1	3	4
TGTTGTCTTAAAGACT	ref_1616_upstream	12	16	18	17	8	10	24	10	16	14
AAATCCATTGTGAAGT	alt_1616_upstream	104	65	146	101	106	92	105	99	108	96
TTAAATTCGTTCTAGG	alt_1616_upstream	6	9	13	3	11	11	4	5	6	10
TCCCGTTAAAGTCAGT	alt_1616_upstream	3	4	1	2	5	3	9	1	4	3
CTTTTTTAGAGTTTCC	alt_1616_upstream	41	56	48	46	31	47	47	29	38	29
GCACACTAGATTAAGT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GATAATCGCCGCTGGC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTCTACGTGGGAAGAA	alt_1616_upstream	1	3	6	0	5	4	4	1	7	0
TATTTGCGACTTCCCC	alt_1616_upstream	57	34	64	50	58	37	50	35	47	51
TACCAGGAGGACATCT	alt_1616_upstream	10	7	7	5	11	12	3	2	11	2
CGGTTTGGCCTCAGGT	alt_1616_upstream	33	38	41	34	36	32	23	30	35	20
AGGGGGACGTGCGCGT	alt_1616_upstream	8	10	9	12	6	6	13	4	8	3
CACCGTCCTTAGACCT	alt_1616_upstream	17	19	19	25	22	16	26	25	25	17
GAGTGCTGGTATTTGC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
AGCTATTACGGTCTCC	alt_1616_upstream	5	9	2	5	4	3	9	3	6	6
TTTAATATAGTGCCCC	alt_1616_upstream	28	19	33	28	35	17	20	23	39	23
GCTGAGAATATTTCCC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCGCTCCTCCGGG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTTACATCTATTAGGT	alt_1616_upstream	115	97	118	101	119	110	114	102	110	110
GTTCATTTGACGCCTG	alt_1616_upstream	10	10	18	15	22	13	9	9	16	10
CGGTTCAGAAAAATCG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTCACACAACGGA	alt_1616_upstream	41	39	56	59	39	41	49	46	49	40
GGTGCTGTTCTAATTC	alt_1616_upstream	4	4	12	1	7	2	4	5	2	4
GAGGTTCAATAGATTG	alt_1616_upstream	65	70	95	65	86	86	82	90	83	71
GAATCGCTGGACTTCA	alt_1616_upstream	33	26	30	26	16	34	16	17	15	16
CTGAGGCCTCCTTCGT	alt_1616_upstream	80	71	119	112	69	80	67	76	83	84
TAGACCAGATATCTTG	alt_1616_upstream	24	13	30	23	17	18	21	18	29	24
TCCCTTTAACTGTCTC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGAGTAGCTTTAA	alt_1616_upstream	52	54	61	51	51	43	46	48	44	45
GTTCGCTCCAGGTGAC	alt_1616_upstream	17	30	30	23	24	17	18	24	36	17
ATTTATTAGGCCGGTC	alt_1616_upstream	9	7	20	12	10	15	9	11	6	9
ACCTTGTCCATCGTTA	alt_1616_upstream	9	11	18	6	17	13	13	17	11	5
ATATGTTACCGACCTC	alt_1616_upstream	24	30	32	20	21	24	25	28	26	26
TTAATGCTTATTGCAG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGTTTGCGACAGG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGGTGCGACCACA	alt_1616_upstream	58	56	71	70	66	60	62	68	59	51
GCCATAGGGGGTTATT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CAGTCATGAACAGTAC	alt_1616_upstream	7	15	16	10	11	10	22	15	11	17
CATCGACCGGGATCTA	alt_1616_upstream	33	36	54	36	36	22	45	39	46	38
CCCGTCGTGACTTGCG	alt_1616_upstream	1	2	2	0	6	0	5	2	3	0
TACCAGTTTGTGTCTG	alt_1616_upstream	168	223	246	211	237	222	232	211	236	169
GGTGACGGTATACAGT	alt_1616_upstream	17	16	13	14	20	7	9	18	17	9
AGCCTCTCGACACACG	alt_1616_upstream	7	2	13	4	5	3	5	9	11	3
CGCTCGACTATCAACT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGCTATCTCTGTA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTATCTATGAGTT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CGCTACGTATATACGC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GTAACTGTTATTTAGG	alt_1616_upstream	10	17	16	16	10	18	10	16	15	13
GCTTGCATGGGATTCT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGTATATGTTCCGGTG	alt_1616_upstream	28	29	32	28	27	17	21	28	17	16
TAGTTTTTCAGAATCA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CACATATAGTTCAGAG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CGAATGGTAATCACCT	alt_1616_upstream	102	86	114	93	71	107	108	93	87	92
ATATTATGATGTCAGC	alt_1616_upstream	43	22	44	43	23	23	29	36	38	27
CATCGTACACGCAGGT	alt_1616_upstream	56	39	77	80	56	66	62	60	50	53
TTAAGCTCCCAGGCGG	alt_1616_upstream	66	48	67	55	43	56	64	51	55	42
GCGTTTTCTTATGCGT	alt_1616_upstream	74	83	90	73	73	72	74	75	88	49
TGTTACTTCATAACCG	alt_1616_upstream	13	17	19	12	10	14	29	13	25	17
CACAAAGATCACCAAT	alt_1616_upstream	21	23	38	22	20	31	23	29	28	22
GCGGTAAGGAATCGCA	alt_1616_upstream	9	13	17	6	12	5	12	8	11	11
AAGAATTAACCAGTTG	alt_1616_upstream	16	12	21	14	17	9	23	13	16	4
CCTATTGCTGCGTTTG	alt_1616_upstream	49	52	62	45	56	45	44	54	55	37
GTTTTGGATCAGTATG	alt_1616_upstream	29	27	38	22	36	27	18	33	17	20
TCTGGACTTGGCCTTG	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTGGCGTATGGCT	alt_1616_upstream	13	17	19	19	10	11	17	19	19	13
CTGAGAGACGGGCATC	alt_1616_upstream	20	20	23	16	10	16	19	16	24	13
GCGTGCCTCTGCACTC	alt_1616_upstream	14	21	18	16	17	10	27	23	26	16
GGGTAGGCTCTGCGAT	alt_1616_upstream	13	16	31	23	23	20	9	26	13	23
CGACAACTGGCTGTTC	alt_1616_upstream	20	24	13	15	25	12	21	25	25	10
CGCCTACACCGCACGT	alt_1616_upstream	33	44	51	43	28	30	39	35	48	32
ACCACTCGCGCGTAAG	alt_1616_upstream	19	18	20	23	32	17	20	22	15	16
TCGTATGTGGACACTA	ref_1616_upstream	175	227	226	197	237	171	245	157	240	156
CCATTTCTAATGTGTA	alt_1616_upstream	21	23	25	32	13	15	19	20	20	14
AGCACACAGTTTCTAA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTGCAAAACTAGGGGC	alt_1616_upstream	63	48	101	77	72	67	74	53	57	65
TCTTTGTCGGCACGCT	alt_1616_upstream	53	66	61	89	50	66	61	56	78	50
TCTTGAAGACTGTCGA	alt_1616_upstream	8	17	14	20	15	13	11	6	20	12
GCTCTGACCAAATACT	alt_1616_upstream	21	27	19	23	23	30	32	22	21	21
AATGCGCACATGGCAG	alt_1616_upstream	16	18	23	16	19	23	21	18	24	27
TCGCAAACAGATACTA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGTAATATCCACGTCG	alt_1616_upstream	1	0	2	3	1	1	0	7	1	4
TCGTAAGGATTGCCTC	alt_1616_upstream	40	47	51	52	45	50	37	37	44	47
CTGATGTGACTACCCT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
GGATTGAACCCGCTCT	alt_1616_upstream	8	12	15	5	7	7	6	5	9	10
CTCTAATGATTGTGTT	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGCGCTCACTTCA	alt_1616_upstream	41	87	38	45	99	39	102	40	103	38
GGCAGTCGCCTTTATG	alt_1616_upstream	27	21	23	19	24	22	22	6	24	19
GTACACGTTTACGCCT	alt_1616_upstream	42	55	46	43	47	33	40	35	38	23
TCTGTTGTCACTTAAA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTGGTGGCTGATT	alt_1616_upstream	16	18	20	19	18	23	27	16	19	14
GCGCCACGCATCGAAC	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
TATTACTTTGCATGGA	alt_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTTGGTCCAGCG	alt_1616_upstream	17	23	22	13	20	18	22	15	22	22
TACGCTATAGACGTTT	alt_1616_upstream	20	21	24	22	21	20	18	24	29	25
GTAAGCTATTAGTTTA	alt_1616_upstream	11	3	7	5	8	3	17	9	7	8
TTCCCGAATATGGGTT	ref_1105_reverse	27	39	32	28	36	34	41	15	30	14
CTTGTTCATCCACGGG	ref_1105_reverse	3	8	8	3	9	5	5	8	5	3
GTGCGAACACTAGATA	ref_1105_reverse	7	11	9	13	11	6	14	13	12	8
AGATTCTTCTGACATA	ref_1105_reverse	25	33	37	22	27	20	38	16	32	15
TTTGTCGGTCATCTCC	ref_1105_reverse	3	3	3	3	1	1	4	0	3	1
TTTGGCACTCGGTCAG	ref_1105_reverse	171	222	189	180	223	178	245	148	271	158
CGTAGGAATTCACTAA	ref_1105_reverse	9	21	13	9	18	15	15	7	19	10
AAATGAGACTGTGAAT	ref_1105_reverse	19	22	20	13	24	17	24	13	27	14
AATGAATATAAAAATT	ref_1105_reverse	132	122	148	107	156	104	130	103	143	96
TGTTATCTTCTATGCC	ref_1105_reverse	38	45	58	50	41	33	53	32	52	32
CAGTTGGCTGTGGATG	ref_1105_reverse	22	11	19	18	24	11	11	6	21	11
TTAATGGCGCCATCGG	ref_1105_reverse	11	4	18	18	15	13	18	10	8	13
GTCCGGTTCCCCTTTG	ref_1105_reverse	35	48	42	32	46	37	54	34	35	28
GGCAAACTTCTAGTTT	ref_1105_reverse	12	18	11	17	17	15	14	8	12	11
CCAAACGTTAAAAGTT	ref_1105_reverse	119	224	174	134	203	130	202	125	207	138
GGGACAAGGGGTAGTA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
AGATTCTCGCGGTGTA	ref_1105_reverse	4	6	8	3	6	1	10	6	4	6
ATCACTCATATCTTGG	ref_1105_reverse	9	23	24	22	16	20	19	21	28	22
GGACTATGCACTCGTT	ref_1105_reverse	47	49	45	41	51	29	56	30	50	38
GGTTCCTCTACGCGGA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GATTGTTGCACTGTTG	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GGTAATTACCCGTTCA	ref_1105_reverse	9	7	5	16	8	7	8	3	5	5
GTGTGCTGCTCTCCCA	ref_1105_reverse	57	39	62	56	79	38	57	48	69	37
TTAATAACTATGCAAT	ref_1105_reverse	14	17	9	14	18	15	17	10	14	6
TGGCATATTAATGTTA	ref_1105_reverse	21	20	19	24	21	16	30	22	19	20
CAAGAAACTGATTCAT	ref_1105_reverse	17	14	12	6	5	5	10	4	11	9
GATATTTGATTGCACC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TTACATGCGCCCACGT	ref_1105_reverse	107	115	132	108	135	95	133	85	133	106
TTGCCTTCGTGTCGTA	ref_1105_reverse	46	52	48	39	50	38	50	37	45	36
TGTCCGCTTTGTGATT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ACAGTAGAACCTCGCC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GAACCCGCCGTTCTTA	ref_1105_reverse	35	42	36	23	53	37	39	35	42	30
TCTAGTATCACAGGCC	ref_1105_reverse	11	13	8	13	11	9	8	7	15	13
CAAGATAAGACGATAA	ref_1105_reverse	126	134	212	131	139	155	155	150	175	151
CCCAATCGCTGGTTAT	ref_1105_reverse	18	19	21	13	22	13	23	11	18	14
AGAGCCTTCGCGCATT	ref_1105_reverse	12	13	9	10	7	12	13	9	22	5
GTCTCCGTTTCCTGAA	ref_1105_reverse	28	46	36	20	33	23	48	24	41	36
CCGACCGGGAATTTCC	ref_1105_reverse	4	15	11	11	17	2	19	9	22	4
CGGTTTCCTAACATAC	ref_1105_reverse	56	75	80	61	95	74	84	61	97	61
ACCGTTGATCGAGATT	ref_1105_reverse	15	8	24	18	18	23	29	16	36	11
GCAATGTATTTCTCAT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
AATGGGTCTGATCATC	ref_1105_reverse	3	2	3	2	2	1	3	3	4	4
CGTTCATCCCAGTTCC	ref_1105_reverse	114	111	113	115	117	88	118	81	98	70
TTATGACTTAGGCCGT	alt_1105_reverse	65	64	69	75	77	63	66	52	80	45
AGATGCACGGATGCGG	ref_1105_reverse	19	8	14	10	4	13	14	14	9	17
CAGCCCGTACTGTTAT	ref_1105_reverse	8	24	11	4	26	16	19	12	18	14
GTCTCTGTGGGATGTC	ref_1105_reverse	3	4	6	4	8	7	8	3	8	4
TCTGATGCTGGCGCAC	alt_1105_reverse	25	39	39	27	65	18	35	40	31	31
GAGCGCTAAACAGGGT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCCCACGACTCTC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GTACCTCTAGCGTGGA	ref_1105_reverse	5	1	2	3	2	1	9	1	0	2
GGCGTGATATAATATG	ref_1105_reverse	0	1	3	2	1	2	2	2	1	3
AAAATGGTGGACGGGC	ref_1105_reverse	62	77	92	90	64	78	79	74	64	67
CTGTAGTCTGTCCGCT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTAAAGAGTAGAA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ATACGTCATCGGCCCT	alt_1105_reverse	24	33	40	31	40	37	26	37	27	25
GCCGTGGTATGCCCGC	ref_1105_reverse	26	45	34	44	51	35	39	35	46	45
TCATCGATTACGAACG	ref_1105_reverse	67	61	82	54	82	65	85	56	100	61
GGATTAGGGTGCTCAT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ACTCCTTTTCCCAGCT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GATGTCTTTCTCTAAT	ref_1105_reverse	1	2	8	3	5	3	6	3	3	1
ACAGCATCCGTGTCTT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGCTGGCATTGTC	ref_1105_reverse	4	7	5	0	2	3	1	2	6	4
TGTGAAAGATTGTTTT	ref_1105_reverse	13	35	13	20	22	11	18	18	31	13
TCCGTGCCACCATCCC	ref_1105_reverse	10	29	12	19	34	9	31	7	21	17
TCAGCATATATTCATG	ref_1105_reverse	17	26	20	15	24	18	33	12	34	25
TGTCTCGATATCTGTC	ref_1105_reverse	9	5	11	11	12	10	19	12	9	9
AACAATTATGGAACTC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTTCTAGCGGTT	ref_1105_reverse	4	3	4	3	6	5	5	4	8	0
CATTGCTCCCTATCGG	ref_1105_reverse	34	50	35	26	44	21	43	36	48	22
TTGGCTTACCCTTTGA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TCATAAGGACCATGTG	ref_1105_reverse	17	22	25	15	28	8	18	15	22	10
GCATTGTAATACTCAC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTGGTTATACTTA	ref_1105_reverse	23	33	29	26	40	29	35	25	21	26
AATTCCGGACGCCTGG	ref_1105_reverse	101	86	104	65	125	88	99	77	122	85
TTTTGGATTATCCGTT	ref_1105_reverse	11	8	4	6	4	9	11	9	6	7
AAGCGCATTATCGGCT	ref_1105_reverse	33	37	37	26	42	20	36	27	25	22
AAGACCACCCGCTTGT	alt_1105_reverse	9	11	15	19	21	20	16	6	18	8
GCGCATAAGGCCAAGT	ref_1105_reverse	42	72	32	47	57	41	52	27	68	33
TGTTTGTTCAGACTGG	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CAGCCCTAGGTTGATA	ref_1105_reverse	14	18	15	18	26	15	24	13	27	11
ATCGATATTTTGTTGT	ref_1105_reverse	26	34	40	33	28	21	43	35	43	30
GTTAGTGAAGTTACAT	ref_1105_reverse	27	30	43	23	31	37	30	36	28	23
TCCCGCAGTTTCCGTA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTACGCAGCCAAA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GCGATTAACCAGAGAG	ref_1105_reverse	26	36	33	31	20	17	32	23	29	21
GGTCTGCTGTGGATTC	ref_1105_reverse	3	7	9	12	17	4	14	7	6	6
CTTCAGTTTTGTGATA	ref_1105_reverse	67	97	92	89	126	85	128	78	117	89
GTGCAAGACGCCATTG	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTTTTTGTGACGA	ref_1105_reverse	74	74	69	56	83	60	72	46	72	43
GAGTTAGTTCCGCCCG	ref_1105_reverse	44	60	50	36	55	46	40	39	52	30
CGTTCTACAGCGTCAA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
AGACGAACCGGCCACC	ref_1105_reverse	30	26	23	20	29	19	25	23	39	24
TCAGAAACGCACACGA	ref_1105_reverse	9	11	7	7	5	9	9	7	5	11
CTCGGGCTTGATACTT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGCTGTCCTCTCT	ref_1105_reverse	68	91	103	83	112	67	101	67	100	60
ATTAGGGTGTTCTTTT	ref_1105_reverse	32	61	56	47	55	53	61	35	53	42
GCCATAGCCTCGATAT	alt_1105_reverse	95	154	131	108	170	94	160	108	173	85
AGCTGCAAAGATAGGA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
AGGTATAGCCTTTCTC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTCTTAAGCAGAA	ref_1105_reverse	53	99	73	71	83	70	109	74	81	59
AAGGTTCAATCGCATT	ref_1105_reverse	109	172	168	123	161	135	178	97	179	106
CCTCACCCTCGCGTAC	ref_1105_reverse	3	3	1	1	2	1	4	3	3	3
TCAGCAAATTCTCCAG	ref_1105_reverse	7	9	6	7	9	9	10	6	11	6
ACCTTAGCCGCCGTAT	ref_1105_reverse	19	37	12	13	55	11	47	13	66	10
AATCTCCATGCCCAGC	alt_1105_reverse	12	11	23	10	10	8	17	14	9	10
TGACCGTGCTCTGTGC	ref_1105_reverse	44	54	46	45	46	36	57	35	62	26
CTATTTCGGTATTGTT	ref_1105_reverse	15	19	19	30	13	18	13	15	20	11
GAGAATGCGGCGGCGG	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATGGGGTCTTAA	ref_1105_reverse	3	7	7	11	4	2	8	6	5	4
TTAGATCGATTGCATT	ref_1105_reverse	18	21	24	27	34	36	27	24	47	28
CTGAGGCCGTCCAATG	ref_1105_reverse	30	44	37	31	38	29	45	26	55	10
ACTACCGTTCATGAAT	ref_1105_reverse	63	96	105	76	107	73	105	75	110	79
TTAGAACCGCAAAATC	ref_1105_reverse	28	36	19	32	39	25	26	24	30	36
ACCTTGGATAGTTGAA	ref_1105_reverse	40	53	38	44	64	36	50	39	53	33
CCAATTGAATTCCGCA	ref_1105_reverse	15	58	21	20	55	19	56	19	44	13
TTTGTGAGTTCGTGTT	ref_1105_reverse	45	45	38	34	46	40	42	21	58	25
CTACTGTTAACATGTG	ref_1105_reverse	25	11	28	19	20	9	16	19	17	17
AATAGCTTCAAATAAT	ref_1105_reverse	21	24	39	22	25	26	38	25	29	23
GTTTATGGCGAGGTCT	ref_1105_reverse	63	77	70	58	53	63	64	55	58	50
ACGATATAGGTCACTT	ref_1105_reverse	22	24	22	12	26	15	32	19	35	14
GGTGGAGTATTCTTGG	ref_1105_reverse	12	23	26	9	31	18	22	15	19	9
CACGTGCGAATGGAGT	ref_1105_reverse	60	91	59	58	65	48	68	43	71	45
ATCCAACATTAGGTTA	ref_1105_reverse	33	24	18	21	29	27	33	28	33	20
GCAAAGGCATTGCGAT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ACGGGTTCGCTACCAA	ref_1105_reverse	8	23	17	14	28	16	21	17	25	14
TTGGCTGTGCAGCTTA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TCCGACGGTCGCACCC	ref_1105_reverse	3	2	4	4	5	4	2	1	4	5
GTTAATTTCGTATAAG	ref_1105_reverse	6	5	3	7	12	7	10	4	7	5
GCTTCCTGTAACTAGC	ref_1105_reverse	1	0	0	1	2	4	2	1	2	1
GTTCTTATCATGTGAC	ref_1105_reverse	27	42	49	34	34	40	35	33	55	31
GGACCGCTTTCTGCCA	ref_1105_reverse	10	16	12	14	11	7	11	4	16	7
CTTTACGGTGTACATG	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TACTCTGCAGCGGAGA	alt_1105_reverse	41	64	70	54	60	51	53	62	86	45
ACATTTTAAGATCTAG	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTATACTTTTCCT	alt_1105_reverse	127	146	141	108	161	108	137	111	178	103
CCTATGCAGCGTATGT	ref_1105_reverse	8	15	12	11	12	11	18	3	18	8
TCCTATGTTTCCACAT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CATAATTCGAAACTGC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
ACAAATTTCAGTCATC	ref_1105_reverse	6	17	12	16	19	9	18	10	18	7
CCCTGGGTGCAGTAGA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGTCGCGCGCTA	ref_1105_reverse	5	3	7	5	5	3	7	2	11	5
TCCCCATGTACTTCAT	ref_1105_reverse	54	151	55	50	175	55	158	45	161	35
CGCTTTTAGGCTTCGG	ref_1105_reverse	109	146	142	116	173	119	189	110	127	92
TCCAGTCGGCCCAGTT	ref_1105_reverse	6	10	9	7	9	5	8	11	8	10
GAGGTATCCAACTGCC	ref_1105_reverse	27	35	39	31	43	26	26	26	40	34
GTCTACATTGCGGTAG	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCTTTCTCTCTTA	ref_1105_reverse	13	7	12	11	11	8	15	8	11	5
AAGATACGAACTTTGT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
GGTCAGTTGCGTTGGA	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCAACCTTGGTAC	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
CGCTATTGGCGTTGTT	ref_1105_reverse	28	33	31	20	52	27	40	27	45	31
GCCACATCATAAAAAT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTTTGTTACGCC	ref_1105_reverse	17	23	26	30	17	21	26	11	28	18
AGCTGGTGGCCACTCT	ref_1105_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGAGGCGCTAACC	ref_1105_reverse	0	1	2	1	1	0	1	0	1	0
GTAATTGTTGGCGCTA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TAAAGATTGCTTCTGA	alt_5833_new	67	56	95	75	60	67	50	75	59	68
CAGATGGGTTTGAATG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
AGCTCGGTGGATTGGT	alt_5833_new	22	22	22	20	22	24	28	20	22	28
TGCGCGCCTCATACAG	alt_5833_new	22	19	16	38	20	14	20	25	19	19
CTCTCGTGGTTGAACG	alt_5833_new	51	53	60	39	51	58	57	40	57	45
CATTGGAGAATCAGTT	ref_5833_new	56	63	67	74	56	52	71	40	63	48
GATCATATGGGTTACC	alt_5833_new	47	42	56	41	40	34	62	45	58	47
ACACACACCGCGCGGC	alt_5833_new	0	1	0	1	3	1	0	0	1	2
TACCCCTACTTACGCC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
ACGCCTGTTTGTTTCG	alt_5833_new	12	16	29	25	14	15	14	35	32	25
CCTGGTTGCTTCATTA	alt_5833_new	29	84	79	64	61	62	80	54	89	57
GGATGGGGTTGCGTTA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GTATCCCATGTTATTC	alt_5833_new	21	29	27	11	14	16	20	13	23	25
TGGTTCACAAGTCCGA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TTATCACCTGCCCGGT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CCTCCCGCGACGAAGA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CTATGGCTAACCATAT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTACCTGAGCT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TCAGCATCGGCACCAT	alt_5833_new	15	7	8	11	11	6	16	5	10	6
TTCTCCTGTGGGCTTT	alt_5833_new	69	46	63	53	67	68	55	71	49	39
TCCCCTGTACTGAATT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
AGAGTGTCTGACGCAC	alt_5833_new	80	91	90	77	88	94	92	98	107	96
CTCGTCTTCTCGGTGC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TTTAGCCACCTTTAGG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CTTGTGATATAGTATG	alt_5833_new	33	44	42	37	29	35	32	34	39	25
GCCGCCTCATTCTATG	alt_5833_new	15	63	35	22	64	18	71	16	54	23
TTGTTACTCTGCTTAG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GGTTTCGAAGGATCGG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CCCGATGGTATAATTT	alt_5833_new	3	18	10	14	17	9	13	6	17	4
TAGGTCAATTTGTTAT	alt_5833_new	21	17	18	15	19	22	14	16	15	17
TGGGATTCAGCTGGTA	alt_5833_new	56	71	99	80	89	78	67	57	65	61
TAAAAGGATAAACCGA	alt_5833_new	6	23	16	16	18	17	13	11	6	18
CCGTGCTGGTCTAGGC	alt_5833_new	27	37	47	51	40	43	36	44	40	30
TCCAGGCATACATCGG	alt_5833_new	19	22	20	24	12	13	28	16	22	18
CCACAGGATTCAATTG	alt_5833_new	3	2	2	2	2	0	4	3	0	2
GCGTTTCTAAGCGATA	alt_5833_new	297	335	359	338	352	323	357	336	344	308
TGTATCCGAGATGGGT	alt_5833_new	67	75	115	94	81	89	88	83	84	77
CGCTGGTATATGCGAT	alt_5833_new	67	89	100	77	83	74	107	75	90	57
GAACATGGACCGGTTG	ref_5833_new	78	72	79	93	75	80	75	80	77	80
ACGTAGCCGTATGATG	alt_5833_new	13	5	13	11	11	11	11	13	10	9
AGAAGATACATTCCTC	alt_5833_new	6	5	4	7	9	7	5	3	5	6
TTCTCACTTTGGTTTG	alt_5833_new	30	32	50	32	22	33	34	39	32	27
TGTTCATAAAGCCTTT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GTCCTCTCGATAGTTT	alt_5833_new	33	18	39	21	32	32	22	24	24	21
CGTTGTAAGCTCTCCC	alt_5833_new	50	47	80	64	47	67	60	53	52	51
TGTCTCATGACTTACT	alt_5833_new	15	5	18	10	7	13	12	4	14	13
GCCCTCTCGCTTCACA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GCTAGCTCCCCATTGG	alt_5833_new	3	10	3	10	16	2	17	2	10	2
TTTTTTGTCTGACGTT	alt_5833_new	7	6	5	3	4	7	5	6	0	1
ATGTTAATAAGTGCGT	alt_5833_new	13	9	18	8	8	19	11	11	14	6
CTAAATGCCCTTATTT	alt_5833_new	45	37	70	58	44	62	45	43	43	54
TCATGTCAGATTACGG	alt_5833_new	23	19	30	29	21	24	26	22	25	28
CATTCACCTCACTTTT	alt_5833_new	47	32	37	51	44	33	47	24	38	40
CATCTGGTTGCTTAGT	alt_5833_new	44	78	93	59	63	54	94	67	78	52
GGCTTCGAAAGCGGGG	alt_5833_new	58	61	70	60	59	60	64	75	73	68
GTGTAAGTGATCCTAA	alt_5833_new	13	15	28	16	21	17	20	12	26	17
AGTGTGCATTTTACTT	alt_5833_new	31	34	30	28	41	30	45	41	40	19
GTTCGGTGACTCTCGT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GTCTCACACGGTAATT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
ATCAGTTTTCCCACCC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CGGCCCCCATAATATC	alt_5833_new	14	7	14	8	13	6	17	12	11	8
TTAACGTGCAGTGTGT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TGAATTCTCCGACTGT	alt_5833_new	40	51	48	41	48	37	51	47	41	54
CGGTGCTTTTAGTATC	alt_5833_new	55	59	69	51	56	59	46	43	54	42
GTGGTGCCAGGGGGTT	alt_5833_new	28	26	24	20	29	25	23	19	26	21
TCAAGACTAAACTTAG	alt_5833_new	6	15	13	6	17	13	5	16	13	17
GAGTTTTATCGTTCCG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TTCTCCCAAGGAGCGC	alt_5833_new	6	6	9	11	8	11	8	17	9	6
CAGGGTCTGAGTATGA	alt_5833_new	47	66	67	60	58	52	67	43	56	44
CATCGGGCCGTCCGGC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
AACTGTTCCGGTTATC	alt_5833_new	21	17	16	12	18	16	18	12	13	13
TTCCACCGGCTCTCTA	alt_5833_new	30	48	40	29	61	27	41	31	38	29
AGGTTCTTCTGCAAGT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
ACAGGGCTCAAATCTA	alt_5833_new	4	3	1	2	1	4	4	1	1	0
CCTAGCTCGGCTCGTC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GATGACGGTTTTTTTT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GGTTTCGAATCGACAC	alt_5833_new	36	21	35	33	26	35	34	26	26	27
CTCTCCTCTTGCTGTC	alt_5833_new	28	19	27	25	19	23	26	21	21	14
CAGGCGCGGTCTGTCC	alt_5833_new	15	11	13	10	18	17	16	19	14	18
TTTCTCACAACTGATC	ref_5833_new	252	283	321	263	307	280	295	280	341	222
CCCGTGCATAAAGTTT	alt_5833_new	2	7	6	8	13	5	13	3	5	1
TGGTGTGCGTTTCCCA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TTCACTCTTCGCGTGC	alt_5833_new	17	27	18	18	33	19	37	21	32	7
GGCCGGTTGCATTCTT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GATTAAATTCAAGTTG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TCTGCTAACAATTGCC	alt_5833_new	69	61	49	63	48	49	45	39	54	58
TTGCAGGGGCTTTTTC	alt_5833_new	73	84	89	97	75	69	83	57	87	74
CTTGTGTTTTTGAACT	alt_5833_new	18	25	11	27	31	18	29	17	25	28
CCCAGAAATTGTTTGT	alt_5833_new	103	102	123	118	124	92	134	96	102	108
GTTGTTCACCATCTCA	alt_5833_new	119	103	138	116	136	89	120	117	160	107
AACCTCATGTCTACAG	alt_5833_new	83	80	107	86	88	71	91	83	93	84
AGCGACTTTGTCTAGA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CTATCCATCCTCCATT	alt_5833_new	27	28	43	42	25	20	34	25	29	18
AGTTCCAATAAAGGGG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TCTCGTTCAGCCGTCA	alt_5833_new	34	28	40	26	23	27	30	26	27	33
CTTCTCCTGTTCGTGA	alt_5833_new	57	65	79	73	64	49	86	56	63	52
CGGGACAGCTTGGTGA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
AGGGGGCACCCAACAG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GGCATTGTACGGTTCC	alt_5833_new	23	20	21	26	25	16	13	19	15	17
GCATTAAGGATGGCCA	alt_5833_new	57	41	81	65	62	64	74	61	47	56
GGCATGCCATCTGTGT	alt_5833_new	24	23	26	19	37	17	29	14	43	13
GTCTTCCCAGCGATCA	alt_5833_new	137	141	159	145	147	127	148	132	163	111
ATGCACCCAGATGTCG	alt_5833_new	52	67	90	64	51	64	69	81	50	80
CGTGTGTTTTGATAGT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TGTTTCCATACGGTTG	alt_5833_new	58	48	57	41	42	47	47	52	53	34
TTATTCGTTCAAGCTT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CAGCTAACATACTTTT	alt_5833_new	40	28	34	30	37	24	21	37	34	29
GCCATTCATGCCATCC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CCCACCCCATCAATCC	alt_5833_new	55	80	64	61	75	47	83	58	80	40
GTCCAGGCCTGTTCTT	alt_5833_new	2	6	5	5	3	4	2	8	4	5
GGCGTATCAAGCCGCA	alt_5833_new	6	4	9	2	6	2	11	14	4	6
GGTTTTCAATTACATC	alt_5833_new	12	10	21	6	12	14	20	11	9	2
GCATCGGGTATTTTCC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GGATCAGTCTTCAAAC	alt_5833_new	43	53	67	55	41	49	50	42	46	27
GAACACAGCTCTTTGT	alt_5833_new	66	64	77	63	76	64	75	62	73	56
CCTCCAAGGTTCTGTT	alt_5833_new	19	28	31	23	19	19	29	21	37	23
GCCGGGCTTGTGGTAG	alt_5833_new	23	29	40	23	31	29	33	21	44	31
GGAACAAACGTATCTC	alt_5833_new	102	105	117	114	93	84	117	111	106	86
ATCGGTGGTTTTGTCC	alt_5833_new	205	181	245	250	169	222	179	200	184	163
GTCAGTGGTTTCTAGA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TTGCTTCAGCGGCTAA	alt_5833_new	13	14	8	10	11	7	6	15	5	12
ACGAACTCGCCTCCTT	alt_5833_new	27	33	24	34	24	29	32	45	21	26
ACATAAAAGTTCGTTC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
AATTGGTCCCAATCGT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CCTTCTCGAAAATTTC	alt_5833_new	11	17	19	19	18	12	11	9	25	11
ATGGGTATTGTTTGTT	alt_5833_new	14	11	9	10	9	14	1	10	5	9
TCTCACTGTAGACCAA	alt_5833_new	19	12	10	16	14	16	11	10	14	12
CGGAGTTGCTTTCCGT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CCTATGGTGTAGCGCG	alt_5833_new	27	22	32	34	26	34	31	29	24	37
GTATGTTACTTGAGTA	alt_5833_new	26	25	23	28	21	25	25	21	30	20
AAGTGTTACATCCGAA	alt_5833_new	41	51	56	47	63	48	49	37	50	47
CCCTGACGGTCCGATC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TGATCCTATCTAAATG	alt_5833_new	71	52	84	61	57	60	44	70	49	62
GTGTGTTCCTATCATA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CGGGTTTTAATGATTA	alt_5833_new	45	49	66	61	50	53	66	60	45	50
AACTTTCGATCTGTTA	alt_5833_new	5	1	4	2	1	3	7	3	6	1
TCGCTGAACTTGTGTA	alt_5833_new	6	17	9	12	20	10	14	11	12	7
CAGTTGCTAGGATGGA	alt_5833_new	9	21	11	20	20	11	17	15	19	13
TTACCCACACGCAGAG	alt_5833_new	4	8	3	3	5	5	10	6	7	8
GGTGGGCGTCCCTGAG	alt_5833_new	26	17	34	19	25	27	18	14	21	14
ATGCAGGCATTGCGTA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CAAACCCGTTTGTATC	alt_5833_new	34	42	32	37	57	35	41	40	41	27
CGCCTAACTTAGCTTG	alt_5833_new	27	25	23	40	39	25	23	26	32	23
GGACTGCCATGGCGCG	alt_5833_new	0	0	0	0	0	0	0	0	0	0
GGGTCAATTTCCTGTA	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CCCTTTCGGTCGACTC	alt_5833_new	17	14	29	12	10	22	24	20	6	9
GAGCGTGTTATCGACT	alt_5833_new	0	0	0	0	0	0	0	0	0	0
TGAGTGAGTTTGGCAG	alt_5833_new	8	9	13	11	13	12	13	12	11	5
TTCGTGGGCTTCGTCC	alt_5833_new	0	0	0	0	0	0	0	0	0	0
CGCTGCCATCCTCGAA	alt_5833_new	19	27	30	26	30	21	26	20	30	15
AAGTTTTGAGCCTAAA	alt_5833_new	39	41	54	35	48	32	31	20	49	33
CCATTGACTTTGGTCG	alt_5833_new	12	19	11	9	13	10	28	8	30	12
CTTCGATTCAATTACG	ref_5774_new	31	56	46	57	62	54	82	44	59	47
GCCTTCAGCGTCAAGC	ref_5774_new	46	61	42	55	53	43	68	30	82	36
TTCAGACCCTGCGTTA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TTTTATGATTCGAAAG	ref_5774_new	3	6	1	1	2	0	1	1	3	4
ACGTCCTTCACTCGAA	ref_5774_new	53	49	52	58	61	36	65	53	45	48
AACCTGCCGCCCCTGC	ref_5774_new	60	58	65	63	71	57	68	43	70	47
GGACTTGTGACCTAGG	ref_5774_new	6	12	8	11	12	9	15	9	16	12
TAAACAATCGTTAATC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CGCACGGCCTCGGATT	ref_5774_new	58	56	74	61	70	46	98	67	64	58
AACGATGCCTCATACC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CTACTCAGGCCTTGGC	ref_5774_new	14	11	15	16	21	5	13	14	21	10
CAGGCCCTCTCTTTGA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CTCCACAAGGGTAATG	ref_5774_new	97	123	91	81	103	90	104	66	111	80
CTTCAACTGGATAATG	ref_5774_new	5	7	3	8	7	4	15	6	5	5
ATCGTAAATGGTTCGT	ref_5774_new	23	29	22	24	33	13	23	25	44	21
GTGGCACAATTAAGGT	ref_5774_new	33	52	41	32	30	23	44	31	48	35
GGTCACTCAAGTGCAC	ref_5774_new	60	98	59	66	69	47	99	42	98	48
AGTCAATTCTATCTAT	ref_5774_new	283	323	290	273	329	260	344	216	338	266
TGATCTGTGCCTACCC	ref_5774_new	12	13	10	12	5	8	14	8	12	4
CTACACATTTATTTCT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GTCGTCTGGAGCGGTA	ref_5774_new	12	17	12	11	11	24	19	15	29	21
TCATGCGCTCGCTGCT	ref_5774_new	38	36	31	39	48	25	44	32	38	19
TCGAATGCATGATCTA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
AAAACCATTGTGAACC	ref_5774_new	15	10	15	12	7	10	14	15	14	14
TTATCTATTGGTACAT	ref_5774_new	37	40	31	44	54	28	55	28	46	35
TAATTAGAGAGAGGTG	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TATGGTGTGGAGTCTC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CGATATATTTCTCCGA	alt_5774_new	146	162	132	125	184	121	140	156	139	145
TGAAAATAGTGACTTA	ref_5774_new	0	8	2	0	8	2	5	0	20	3
AGCCTTCACAATAACG	ref_5774_new	1	4	3	3	3	7	4	3	0	0
TCAAGTCCGCAGTCTC	ref_5774_new	2	4	6	2	9	5	8	7	6	11
GTAATGGAGATGGAAT	ref_5774_new	9	3	7	5	6	6	5	4	6	4
ACTTACAGGCCCTTCG	ref_5774_new	40	54	43	36	52	28	55	55	56	30
TGGCTTCAGCGACAAT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TTTTTGCTTGTCAGGA	ref_5774_new	47	50	44	35	48	40	53	36	63	20
GACGCTCTCCCTCCTC	alt_5774_new	10	9	26	11	23	18	16	16	21	8
ACGGTAAATCCGAACT	ref_5774_new	22	20	24	14	19	16	18	15	16	12
GCCATGATAGACAAGT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CTCCTCGTTCCCAGGG	ref_5774_new	12	8	11	4	10	3	22	1	9	4
ACTCTCCGGTATGAAT	ref_5774_new	25	21	29	27	25	21	29	35	43	28
ACCCGTACAGAGGTAC	ref_5774_new	9	9	5	13	18	10	16	14	19	9
TAAACGTAGGTTTTTC	alt_5774_new	43	35	60	33	37	49	41	30	60	43
CGTATACATGTCTGGC	ref_5774_new	10	10	11	10	5	9	7	4	11	4
ATATGCCATACGGTGT	ref_5774_new	3	11	6	11	6	4	15	9	7	12
GTTGTCGCACCCTTGG	ref_5774_new	13	19	17	16	21	6	25	12	25	7
ATAGCTTTGTGTTTGC	ref_5774_new	18	37	14	23	31	22	17	20	29	9
ATTAGATGCATCATCA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CATGCGTCCATGTCTT	ref_5774_new	28	46	34	27	35	28	28	33	33	20
CTGAACTGTGAGATAA	ref_5774_new	2	4	2	3	4	3	4	1	1	2
TGCCTACCGGCAAAGA	ref_5774_new	38	56	43	36	42	40	56	27	68	35
AACATGAATTCGTCTA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TGCCTGGAAATAATTA	ref_5774_new	31	47	46	26	45	34	49	21	46	20
CATTCTTTATCGCGTT	ref_5774_new	76	82	57	59	96	72	87	57	89	50
TGCTTAGTTGGTATTC	ref_5774_new	124	187	163	136	212	134	199	125	223	115
CTATTGTCCGTTTGCT	ref_5774_new	24	28	32	25	49	37	27	29	30	28
CGACTTCGCGGTCTTG	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GGAAAAGTTTTTGGAC	ref_5774_new	2	6	4	6	10	4	8	1	8	6
TTGATCCTTAAAGCTC	ref_5774_new	24	44	25	21	29	25	29	18	53	15
CAACTGTAAAGCCTAC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CCCGGTATAAACATGA	alt_5774_new	91	154	85	75	148	72	186	59	177	51
CGTTGTCGTTACACGG	ref_5774_new	1	4	6	3	2	1	2	3	8	2
GTCTCCAGGGCTACCC	ref_5774_new	6	16	11	9	4	7	15	1	16	8
CGCGTGATACGATAAG	ref_5774_new	43	97	68	58	95	66	85	45	81	43
GCTTGTTACGTTCCCA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CTTTTGTCATTACGCC	ref_5774_new	3	13	5	3	18	7	11	10	8	6
CGCGAATCTCGTCTTA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
AATGTAATACGAGATT	ref_5774_new	15	37	45	21	45	23	38	20	32	15
TGGCCCTCGGTAAGTG	ref_5774_new	8	10	2	10	9	1	10	9	14	7
CATGACAATGATTACC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CGCAGTCCTTCCTTAT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TTCCGTCGGATAGCCC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TGCAGTCGATGATTAG	alt_5774_new	16	25	25	17	23	21	24	12	24	8
CAAGCTAAACCTGCTC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TTCATCTCGTCATGTG	ref_5774_new	3	6	3	6	9	4	8	3	8	4
CGTGGAGACGCTTATC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GTACATTGGATTTTTG	ref_5774_new	45	90	73	62	96	73	88	57	106	50
TCACGTGGGTGACCCT	ref_5774_new	70	99	91	79	102	74	110	68	98	74
GGAATCTATAGAGCGC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GTTGTTATGTTTTTTC	ref_5774_new	0	0	0	1	0	0	0	0	0	2
TAGCAATTCACCTTTA	ref_5774_new	49	59	49	41	65	41	50	51	62	45
CTAAGATCTACAATTG	ref_5774_new	31	27	23	22	24	15	23	25	16	16
TAGGTCTCTTGTGGGG	ref_5774_new	11	25	29	11	14	10	15	14	30	10
GTTGAGTTCTTTTAGG	ref_5774_new	7	11	11	7	7	13	6	8	6	8
CCTTGGTACTCATAAT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GTGCCCAGCCTTCTAA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GAGGGCACAATGGTAA	ref_5774_new	1	3	3	3	2	0	2	5	5	4
GTTTCAGGAAGCATTC	ref_5774_new	15	31	19	20	25	14	28	12	25	15
CCCGTTGTCGCAAGCG	ref_5774_new	23	41	27	8	41	19	30	21	55	21
GATTCAACTGGGCAGT	ref_5774_new	25	31	15	21	40	27	44	17	29	24
TTTTGAACAAGACCCT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TTCTGCCTGGATTTTA	ref_5774_new	1	2	4	4	1	4	5	4	11	3
GGTTTGCAGCAGTTTG	ref_5774_new	149	236	213	164	240	181	208	143	223	157
TAAGTAAATGTGGCCA	ref_5774_new	27	47	49	30	39	54	53	32	53	47
AGACAGTAGCCCCACC	ref_5774_new	8	16	11	6	11	19	12	18	14	14
GTGGCTAAATTGCTAT	ref_5774_new	8	16	17	8	13	9	15	9	7	20
TCGGACATATTGCTTT	ref_5774_new	108	139	119	114	117	108	126	120	117	105
TATGAATCAGGTTGGT	ref_5774_new	6	4	10	4	4	7	20	4	8	7
GTGGTTTTCAAGCTTC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CCATTACTCATTCGCC	ref_5774_new	1	6	6	4	5	2	6	5	8	3
ACCGTTAGCTGCAATA	alt_5774_new	19	36	23	12	33	18	30	15	22	16
CTTATAACAAAATAGG	ref_5774_new	30	39	31	29	29	28	56	22	36	15
GCTGACCGACTTTTAG	ref_5774_new	15	11	21	18	29	12	20	13	20	12
ACTGTCAGGGATTCGT	ref_5774_new	45	41	65	45	45	48	66	20	60	38
CATTGACCCGGTAAAC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CCTGATCCCTATAAGC	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GGTTCGGTGTTACGGA	alt_5774_new	76	111	99	94	106	76	139	77	141	69
GGCGACGAGTAGGCCT	ref_5774_new	73	72	91	63	102	53	76	59	66	57
GCGGTTCACCGTGGTT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CCCGACTGTCGTGTGT	ref_5774_new	5	7	5	4	5	4	11	4	6	5
GTATTGTTCATCGGGT	ref_5774_new	49	77	60	59	63	54	86	42	77	40
GCCGTCTCCTTCCGTG	ref_5774_new	0	0	0	0	0	0	0	0	0	0
GTCGTACCGAAAGCCC	alt_5774_new	44	68	78	70	72	69	71	66	79	54
CGGGGATTGTAGCGTG	ref_5774_new	23	17	23	18	30	22	16	14	26	12
TCCTGCACCTTCCCGC	ref_5774_new	5	8	1	3	4	6	6	4	9	6
TTCGATCATTGGGCTT	ref_5774_new	71	126	127	93	134	89	145	87	150	91
TTTGGGGCATTTGTTA	ref_5774_new	26	25	31	27	33	24	36	24	41	20
AGTTTGCCAAGCCTCA	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TCTACTCAACTTTTCG	ref_5774_new	0	0	0	0	0	0	0	0	0	0
TCTTATTCGTCTATCG	ref_5774_new	27	30	27	32	46	20	35	24	55	19
TCACCGGCTCGGCTGA	ref_5774_new	5	1	4	6	10	6	6	2	7	3
GCCTATGTGGGGTGCT	ref_5774_new	16	28	26	20	26	21	34	16	28	22
TGATAAAAGAGGATTG	ref_5774_new	6	9	7	8	4	4	12	3	2	4
TCACCAGGGATTCGGT	ref_5774_new	0	0	0	0	0	0	0	0	0	0
CATCCAGATTACCGGC	ref_5774_new	67	57	71	49	66	63	88	52	72	45
TATCACTGTCTCACCC	ref_5774_new	19	24	23	16	21	18	31	16	27	18
ATCCCCGTTGCGCCCC	ref_5774_new	19	20	18	14	20	21	27	11	24	16
ACTGTTGGTAATTCCT	ref_5774_new	2	0	1	4	1	1	1	0	3	2
CGAAGCCGGGTGACGC	ref_5774_new	56	74	68	46	84	76	83	48	82	60
ATTGAGCCGTTGATGC	ref_5774_new	22	61	23	26	50	23	69	18	62	18
GTAACAAGTATGCCCG	ref_5774_new	38	31	37	30	38	22	41	20	44	15
ACGAATCATCGGGTAT	ref_5774_new	41	40	40	50	50	60	65	52	52	36
CCAGGCGGATATAAGA	alt_5774_new	86	210	124	140	247	109	217	87	261	91
CCGTTTCTTCGGTATA	ref_5774_new	7	18	12	10	20	6	11	7	6	4
GGTCCCCCTAACTCAG	ref_5774_new	22	29	37	32	47	20	41	27	39	32
TCCTCTTCTCCTCATG	ref_5774_new	0	0	0	0	0	0	0	0	0	0
ATGCGGGTATTCCTTT	ref_5774_new	33	37	31	33	51	37	38	28	45	17
TAGGGCGGTCTTTTGA	ref_5774_new	39	61	69	51	65	60	70	42	49	29
GCTACCTGTTTCTCGC	ref_5774_new	14	30	28	25	32	19	31	25	30	25
CACTACAGAGAGCTCC	ref_5774_new	32	37	28	20	29	36	51	27	30	24
CGGATCTGCAGTCATC	alt_5061_RC	52	84	74	78	83	84	58	75	66	69
CGTATGTTTTTATGGT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CTGAAATTGTCAGAAT	ref_5061_RC	57	66	71	48	63	52	67	48	70	47
CCTGTATGATTTTGCC	ref_5061_RC	96	111	116	108	99	112	97	97	123	113
ACTTCTTGAATGACAC	ref_5061_RC	3	2	5	2	2	9	9	6	6	1
ATCCTAAGGTCCGCGA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
AATGGGCTACCGGCGT	ref_5061_RC	144	150	172	149	150	133	134	147	141	130
CCTTCTGGTCCCCGTT	ref_5061_RC	131	138	162	175	152	130	165	156	212	114
GGGCTCCTCATGTCTA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CCCGGCGGTACTCCAG	ref_5061_RC	45	41	58	52	44	55	49	52	44	37
TCTAGCGTGCTCACCT	ref_5061_RC	9	7	11	6	5	8	13	8	9	8
TATCCTAGTGTCCTAA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GAGTAAGTCAGCCTTT	ref_5061_RC	0	1	1	0	2	2	2	0	3	4
TTATGGCTGGCTATCC	ref_5061_RC	11	10	8	16	8	11	8	15	10	4
AGGGACATGCATGTGT	ref_5061_RC	22	19	18	19	25	20	16	20	20	11
CGTGGAGTATGGATGG	ref_5061_RC	113	91	153	141	97	120	92	122	101	115
TTCTCCCCCTTCGTCG	ref_5061_RC	29	30	33	32	41	25	27	25	37	36
CACCCGCCTCCTTCAT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TCGTGGATGTTTCCAT	ref_5061_RC	17	6	26	26	14	23	13	24	19	23
TTTCTTCTGTTAAAAT	alt_5061_RC	38	43	35	49	33	23	56	40	27	30
CACCATAAGTCCGTGT	ref_5061_RC	21	18	20	18	11	19	12	28	14	13
CGCTTGTGTGTAACCG	ref_5061_RC	23	19	41	20	41	41	32	24	29	37
CATTGCTCTTTAGGTA	ref_5061_RC	72	67	105	87	86	85	75	82	93	79
CTGTATGTCTAAATTC	ref_5061_RC	38	23	44	31	24	25	31	30	29	33
GTGTGGATAATAGTGG	ref_5061_RC	26	21	37	28	27	36	34	27	28	32
GACTACAACGCAGTGA	ref_5061_RC	13	23	16	22	24	16	22	14	21	21
ATTGAGGAGCGCCCGC	ref_5061_RC	21	5	21	26	13	26	19	19	23	18
GTTAACTCCAGCGGCA	ref_5061_RC	50	56	32	43	45	45	41	42	58	28
GTTTAGTTTAGTATCT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
ATCTAAGGCGTACCCG	ref_5061_RC	19	26	42	27	28	22	21	17	28	15
GCGGTTAACGCATGCG	ref_5061_RC	28	37	41	42	37	33	42	35	26	39
GTCAGTAGCGTCTGGT	ref_5061_RC	18	20	18	17	24	20	22	14	24	24
GCACTACAATTTGTTG	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
GTTTATGAATATATTT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GGTACGACGGGAACGC	ref_5061_RC	10	6	5	1	6	3	5	3	8	1
TTTGCAGATACGTGAA	ref_5061_RC	19	17	21	10	14	17	16	16	17	13
TTTGCTCAGATGCCTG	ref_5061_RC	3	8	7	5	4	3	7	1	2	4
GGCGTTATGCTTCAGC	ref_5061_RC	17	17	23	26	19	20	13	10	15	11
TCTCCTTCGTTTGAAA	ref_5061_RC	7	7	14	5	9	5	5	3	15	6
TGACTCAGGCGCAGTA	ref_5061_RC	41	20	33	35	27	25	24	30	30	26
CCAGTGGTCATCCGAG	ref_5061_RC	7	28	11	2	20	6	22	4	32	6
CTTCGGTCATTTCACT	ref_5061_RC	1	0	1	0	1	0	1	2	4	1
TTAGACTACCTCCTTG	alt_5061_RC	62	91	93	73	92	53	99	62	95	61
GACAATTGGACATGTT	ref_5061_RC	12	7	13	4	10	12	16	16	10	7
TGCCCCATACTTTTCT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CTAGTATTCCTCCCTA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GTTAGCTTGGTGCGGG	ref_5061_RC	12	8	16	6	19	6	13	13	13	10
CGAGACTGCCTCTTAG	ref_5061_RC	33	13	21	22	12	12	16	22	17	8
GGTCTATCTCCGCGCC	ref_5061_RC	19	13	26	14	14	19	25	8	16	17
CTTGATTTTATGTGGA	ref_5061_RC	17	13	11	15	13	15	13	15	24	15
TTGCGCACCGAGAGTT	ref_5061_RC	7	5	5	8	12	3	2	4	8	5
ATCTAGCCCGCTCCCG	ref_5061_RC	12	26	11	18	14	12	20	11	31	14
GACGGCATCCCTGTAT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CGTATTCTTCAAAAAC	ref_5061_RC	3	5	3	7	7	7	4	1	7	2
CTACATAATTTGCTAC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TCTTTCTAAAGTTTTT	ref_5061_RC	12	12	7	10	11	3	19	11	9	9
GGTTCGCGTAGAAGTA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
GGGATCACTTCGTGGA	ref_5061_RC	115	123	118	112	108	134	84	105	117	94
CCCGGCCCACCATATT	ref_5061_RC	34	29	38	35	36	34	51	27	36	25
CATGCCAATAAGGTTA	ref_5061_RC	37	47	58	43	46	38	35	52	58	30
AACGTTTCTTTTCGAT	alt_5061_RC	102	53	97	82	44	100	69	81	48	82
TTATGACCCTAGGCGA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TATGCATTGCTTTAGT	ref_5061_RC	19	12	15	25	16	13	22	17	17	14
ATATTCAGTCCTTGCC	ref_5061_RC	15	21	23	20	9	20	15	18	22	24
TTCATCCGAAAGGTTT	ref_5061_RC	44	45	71	49	56	37	45	30	47	41
CACAATCTTATATATG	ref_5061_RC	63	59	57	55	41	65	53	50	41	29
TGGGCCCGGACTTTGA	ref_5061_RC	76	62	73	74	56	61	72	53	58	58
ACTTCGACCAAATCCC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TTGTTTTGCATACCCT	ref_5061_RC	4	1	3	8	4	2	5	9	6	0
ACATATCTGCCGCGCT	ref_5061_RC	12	11	12	15	10	13	10	8	23	10
TTACTCGAGCCACTAG	ref_5061_RC	48	62	60	59	58	55	53	47	47	52
GGTGGAGGTAGGTTCT	ref_5061_RC	26	20	32	28	21	22	30	27	22	26
GTCAATGTCGTATACG	ref_5061_RC	24	21	23	18	23	15	12	22	27	17
TTTAAAGCCCAGTCTG	ref_5061_RC	64	50	80	73	54	67	65	60	62	60
CTGTCTCTTTACAATC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TTACCGTTGGTTCGTT	ref_5061_RC	19	25	40	22	24	32	24	20	20	28
CTTTCACATGGCGAAT	ref_5061_RC	52	42	50	36	65	35	54	39	44	35
GCCTTCGCTTTTAGCT	ref_5061_RC	2	5	2	1	7	12	10	6	9	7
TAGATTCAGTAGAAAG	ref_5061_RC	28	25	39	18	11	12	24	19	21	16
CCATTTCGAAGAATCA	ref_5061_RC	25	19	25	23	21	19	19	14	18	18
ATGGTAGGGCGCAGAC	ref_5061_RC	30	27	34	29	14	23	28	21	22	12
ACTTTTACCGTCTATA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
GCTCTCAAACCGGTGC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
ATCCTTGCATTCCGCG	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
ATATCTTCCCTTTGTA	ref_5061_RC	30	29	52	39	30	45	27	31	22	38
AAACTGAGTCGGCTAC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
GCTCTCGGTTTGAGGA	ref_5061_RC	62	55	92	67	66	67	70	52	60	62
TAGATGCCACTCAAAA	ref_5061_RC	72	78	107	71	68	77	76	62	65	76
TCAGAGTCGGAGATAA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CGCACTTGAGTTACAT	ref_5061_RC	109	115	131	123	104	92	120	85	132	101
GCGGTGTCTCTCCCGC	ref_5061_RC	121	146	152	123	158	125	159	108	137	98
CTGCGGGTTCACACTC	ref_5061_RC	22	19	28	36	30	26	46	24	26	19
ATCCGGGCCCCGTAAC	alt_5061_RC	144	100	166	148	128	151	131	146	121	114
AAGTTTTCTAGAACAG	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TTGCTGCTTGAACCCC	ref_5061_RC	96	84	128	113	79	115	92	87	101	90
ACTCCTAATGTTAGAG	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CTATCAGCATTCCCGC	ref_5061_RC	29	40	52	32	44	49	47	49	32	36
TATCTTGAGACTGACT	ref_5061_RC	86	69	62	76	62	62	61	54	59	75
ATCTACCTTCGTGTTT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TTAACCCCGTGCAGGC	ref_5061_RC	9	8	10	9	8	13	6	10	11	5
TTCTTAACCATACCGG	ref_5061_RC	5	4	5	4	10	3	8	3	6	2
ATCCTTCGTTTCAGTT	ref_5061_RC	8	10	7	12	3	8	12	12	8	4
AGGCACGTAAATGCCT	ref_5061_RC	19	18	19	14	13	18	13	14	18	15
TACTGCAGATCAATGT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CCAAAGATTAGCGCGC	ref_5061_RC	4	3	6	4	5	6	6	3	6	5
TTCAACTTTCGCTCTA	ref_5061_RC	24	16	35	31	20	23	21	16	33	25
ACGGCCGATCTGCGTT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TCAACGTTGTTCCTTC	ref_5061_RC	13	15	21	14	16	12	18	10	11	14
GGTGCAAGCTCCATGC	ref_5061_RC	16	15	8	15	25	14	12	16	13	13
GACACCTTATTAGGTG	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
GGTCCCACTCCATCGA	ref_5061_RC	14	14	17	15	7	12	11	10	13	11
TTCTTATGTGGGGTCG	ref_5061_RC	4	2	7	8	3	4	8	5	2	3
AGTATGCATGCTACGG	ref_5061_RC	79	92	91	78	87	86	109	73	98	81
TCGGTTTAAACCACCC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
AGCCAGATCCGCGCCT	ref_5061_RC	28	37	43	31	26	26	43	21	40	22
TGGGCTGATCTTAAAC	ref_5061_RC	3	4	5	2	1	2	3	3	1	3
TACCCATTATTGATCA	ref_5061_RC	17	23	23	22	23	22	17	24	27	16
CATTCACCGCCTGCTC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CGAACTCCCTGTGCAC	ref_5061_RC	33	54	47	40	53	34	44	29	38	33
GTCGCAACGCTTTAAC	ref_5061_RC	22	15	28	23	17	29	20	20	26	29
CCCGTATCGTATCTTT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
ATCTAAGACCCCCCTG	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TATGAACGTCCGGTCC	ref_5061_RC	63	47	65	48	45	52	53	56	59	57
GCGAGTCAATAGCGTT	ref_5061_RC	11	10	9	7	12	17	12	13	22	5
CTCCACTATTTCCCGA	ref_5061_RC	27	29	38	27	28	30	41	27	36	25
CCCTTGTTTACGACTT	ref_5061_RC	34	37	25	35	31	29	49	27	34	16
GAACCTGTCAATCGCT	ref_5061_RC	67	88	100	75	61	52	67	60	57	55
GTCCGATGTATGTTGA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
AGCTGCAGTATCACGC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
GCATCCGTATAAGGAT	ref_5061_RC	26	16	29	22	16	23	23	12	14	20
CACTCCATTGAACCGA	ref_5061_RC	14	19	21	8	17	11	17	7	17	14
GACTGCCAATCGCTTA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TCGATTCGCACTACAT	ref_5061_RC	112	81	108	102	102	80	111	87	105	86
AGCCAATGGCGAGCAT	ref_5061_RC	27	32	43	25	39	31	43	30	29	20
GTATATCTACCTTGCC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TGCACTCCATGTCGTC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
AGCAGAATGAGGCTCC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCTGTTAACACA	ref_5061_RC	2	3	7	0	1	2	1	2	2	2
CGGCCTATTATCCTAT	ref_5061_RC	20	18	26	13	26	22	20	23	12	22
ATCTTATATGGCACTC	ref_5061_RC	40	49	23	35	27	34	33	27	30	24
TATGCCGACAATCGTC	ref_5061_RC	4	7	0	4	0	2	3	3	2	2
TTTCGCGCCTAGCTAT	ref_5061_RC	16	9	13	8	15	17	8	6	5	5
TCGGACTGTTTATTTG	ref_5061_RC	22	21	21	24	16	26	25	29	21	21
ACGACGCATTATCAGA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
CTAGTGATTTTGCTAG	ref_5061_RC	1	5	1	3	2	2	3	2	1	3
TCGAACTGCTACCTGG	ref_5061_RC	5	10	8	7	9	10	5	4	17	4
CGTCTAATTTGAAGAA	ref_5061_RC	19	17	27	28	16	16	12	25	13	11
CATGTTTGGAGTCCAG	ref_5061_RC	4	6	4	7	2	3	3	2	1	2
TATGCTTTATGCGTCA	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
AGGGCGGACACTCTCT	ref_5061_RC	54	36	68	43	48	36	51	36	52	35
TCCTCTCCAGAGCTTT	ref_5061_RC	10	7	5	7	5	2	6	6	6	4
TGCGCCATAGGAGTCA	ref_5061_RC	142	208	187	161	201	129	233	143	205	118
CTTTTATGTCCCGCTC	ref_5061_RC	0	0	1	0	0	0	0	0	0	0
ATCAAAATCTGCCCAT	ref_5061_RC	34	40	43	52	41	31	31	35	42	27
CGATTTACATGATGAT	ref_5061_RC	11	12	27	15	22	25	18	22	22	9
CTGGCAAATATAACAC	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
TGTGACATGAATCGTT	ref_5061_RC	274	251	344	339	307	332	279	280	274	230
ACCATGCTTAGCAATG	ref_5061_RC	5	2	6	4	4	6	6	5	4	4
CATGGTGGTTGCTCGT	ref_5061_RC	0	0	0	0	0	0	0	0	0	0
ATTACGTCTACTGGTG	ref_5061_RC	32	32	26	35	26	35	34	30	32	31
GATCTAATTGTATATC	alt_4116_upstream	2	13	6	4	8	6	12	5	11	4
CGGCCCTTCGTCTGGG	alt_4116_upstream	27	48	23	16	45	19	55	15	39	21
TAAAGAGAACCCCTAG	alt_4116_upstream	7	36	17	10	29	7	22	11	35	17
CGAATGCTCATACCTA	alt_4116_upstream	7	18	5	6	20	11	21	5	13	8
ATCCTTTTTTGTCGAT	alt_4116_upstream	0	0	1	3	3	1	3	1	4	0
TAGATGCTCAATGTCG	alt_4116_upstream	14	33	9	28	39	16	35	16	38	15
CCCTTCGCCCACATGG	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGCCGGGCTGGA	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTTATGTTGAACTAGC	alt_4116_upstream	9	30	14	7	21	8	19	14	9	9
TTACTTTGATCTGTGC	ref_4116_upstream	134	293	152	118	260	105	328	117	310	129
TGACCCAGTAGGTAGT	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCGATTTTAAACA	alt_4116_upstream	2	9	8	5	3	5	5	1	5	2
AAATTCCCATATTGGG	ref_4116_upstream	128	286	160	139	293	116	255	102	330	114
ATGCTTCGCATTTCGG	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCACCGGTTATAC	alt_4116_upstream	100	199	117	104	238	88	219	80	231	90
AATAGGCGCGTGGAGG	alt_4116_upstream	28	60	38	35	57	27	67	18	69	20
CTACCCGAGATAATCA	alt_4116_upstream	0	3	0	0	4	1	3	0	5	2
TTTCTGGCGTCACCGG	alt_4116_upstream	129	265	170	141	207	141	270	98	307	114
CCACGTGAGATTTTTT	alt_4116_upstream	5	14	8	13	24	6	19	11	8	12
GCCCTACCGATTAAGG	alt_4116_upstream	10	19	12	11	33	9	14	16	21	8
TCACGGCAAATCTCAG	alt_4116_upstream	13	38	22	18	30	14	31	19	40	7
TACCTTAGTTGTGTAG	alt_4116_upstream	11	43	24	14	52	16	52	15	50	10
AGGTTCCAGTGATGAC	alt_4116_upstream	89	215	107	107	193	90	240	89	208	101
ATCGAGCATGGGTCAC	alt_4116_upstream	2	1	0	3	2	0	4	0	3	0
TTCATGCTTCATCCTT	alt_4116_upstream	19	33	17	19	36	14	22	14	33	17
GATGTCTGGCGGGCCC	ref_4116_upstream	110	191	132	105	164	84	185	67	233	91
CGGCATAGGGATGCGT	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTAACCATGTATGTAA	alt_4116_upstream	5	6	8	7	11	9	20	4	6	2
CCCGTCACGCATCTCG	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGCGTACTAGCTC	alt_4116_upstream	25	61	19	22	49	23	55	26	61	19
ATCTACGTCAAATCTC	alt_4116_upstream	1	7	1	1	7	2	3	1	8	2
CTTAGTGGTACATTCT	alt_4116_upstream	11	25	10	7	32	9	19	6	27	13
TCGGCTCCTCATGCAT	alt_4116_upstream	1	6	4	3	6	1	7	1	10	3
TGTCCATTATTATCAG	alt_4116_upstream	7	21	11	9	21	7	26	7	16	4
AGCAAAATCATTCAAA	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTTTCACTCCTTC	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
CACCACGCATTGCTTG	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTTCATATGAACA	alt_4116_upstream	20	76	32	37	87	29	70	31	52	39
TTAACCTTGTTAAGTG	alt_4116_upstream	40	163	77	46	162	65	139	47	182	57
TTCAGCCAAAGAGAAT	alt_4116_upstream	6	14	6	6	18	5	12	3	14	7
TGTATTATGGGGCGGT	alt_4116_upstream	25	50	28	14	56	18	53	17	43	16
ACGCTCCACAAATCTC	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTTAGTTTCTTT	alt_4116_upstream	2	6	5	4	7	4	7	6	7	3
TGAATAACCTAAATTA	alt_4116_upstream	28	55	37	16	55	9	54	31	64	24
TGCAGTCACTGTATCA	alt_4116_upstream	19	58	18	22	70	14	38	17	51	11
GCCCGGTTGCTCTACC	alt_4116_upstream	4	15	6	9	16	5	16	4	16	15
CCCTTCCATGTAATTC	alt_4116_upstream	4	7	5	2	8	4	7	0	3	3
AAATGGCAGGTTTTAA	alt_4116_upstream	247	430	307	217	393	235	456	198	431	210
TCTATTTCACATACCG	alt_4116_upstream	87	263	114	101	266	91	286	84	231	65
TAACAGTTCGGATAAC	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGCGGTAAACCG	alt_4116_upstream	4	8	2	0	8	1	6	0	8	3
AGTATTAGAGGATAGT	alt_4116_upstream	11	43	17	16	38	18	49	18	38	15
TAATTCCTTTCAATCT	alt_4116_upstream	14	42	21	23	45	17	33	21	30	12
CAAACGCTAACATGGC	alt_4116_upstream	72	117	95	74	142	81	140	66	143	77
ACTCCTGGTTCGTACC	alt_4116_upstream	7	25	6	7	16	8	28	8	25	6
AGACGGCCGTATTGCT	alt_4116_upstream	4	18	5	4	12	6	11	6	17	3
TGTATCACCTGCGGTC	alt_4116_upstream	16	38	13	10	36	12	36	11	23	11
ATCCTAATCAAGCTGC	alt_4116_upstream	38	71	37	37	71	26	62	34	82	28
TTGGGTCTCCCTTATG	alt_4116_upstream	7	25	10	15	33	8	28	7	20	4
CACTTCTACCCGTCTA	alt_4116_upstream	0	7	0	1	8	0	7	0	5	0
TAAGCGGTTCCTTCTG	alt_4116_upstream	46	98	48	49	137	55	109	31	149	44
GTTGAAAAGCTCCTTT	alt_4116_upstream	1	2	0	0	1	2	2	0	5	1
TGCAGTGCCCTTTGCG	alt_4116_upstream	24	62	31	25	71	23	62	24	79	36
GACCGCGGACAGCAGA	alt_4116_upstream	14	48	19	19	41	14	49	26	50	18
AAGATAAGTTTTTCGT	alt_4116_upstream	7	14	8	9	13	8	20	13	19	8
TCTGGCCCAGCCCGGA	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCTTCCCCCCGTC	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
CGAAACATCAATTTAT	alt_4116_upstream	10	17	14	11	33	17	48	16	38	15
TGGGTCATGCCTATTT	alt_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCGTTATGGCATA	alt_4116_upstream	15	37	14	29	38	23	44	18	43	18
TCTGCCCACTGGTGCC	alt_4116_upstream	1	4	4	2	4	0	7	1	7	0
TCCTATTTAATTGCGT	alt_4116_upstream	39	123	45	35	108	33	112	43	113	36
GGTGGACTCTGAGATT	alt_4116_upstream	1	26	12	11	27	13	20	8	35	16
GCCAACAGCTCTGGTC	alt_4116_upstream	21	46	31	17	49	16	59	17	43	17
CCCTTCGCCCACTTGG	alt_4116_upstream	31	124	50	44	120	34	157	33	140	23
GTAATTCAGCTCCAGC	alt_4116_upstream	47	81	54	46	59	45	72	32	93	38
GCTTCAATGTTGGGAG	alt_4116_upstream	8	34	17	14	29	16	30	6	32	9
TCCTGATTGCAAACAC	alt_4116_upstream	9	34	19	13	24	11	26	12	34	19
TCCGGTAACAGGATCA	alt_4116_upstream	7	28	10	12	13	7	13	6	21	11
GAGGTAAGCTGTGATT	alt_4116_upstream	16	71	29	19	51	22	60	20	78	13
ATGCGCTTGCCACATC	alt_4116_upstream	9	32	14	11	27	12	27	13	32	9
GTCAGTGTAGTCAACA	alt_3975_fdr	200	190	224	241	179	185	179	223	190	196
AATACTACTTCAGTGT	ref_3975_fdr	172	137	239	173	119	154	165	152	133	160
ATAGCCCGCAGTTGGG	alt_3975_fdr	141	120	189	171	110	173	121	119	142	127
ACGCGTGCTGGTTCGC	alt_3975_fdr	25	41	32	28	38	25	29	29	40	30
AGGCATTCTTCGGTCT	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
ACGCACGTCAGACCAC	ref_3975_fdr	339	97	358	320	117	284	134	354	144	283
GGTTAGCTAAGTTCAT	alt_3975_fdr	89	69	130	87	45	94	76	84	85	82
CCCCTTTACTTCTCGA	alt_3975_fdr	42	20	49	45	26	40	28	45	32	34
GGTGTTGGACAAGCGC	ref_3975_fdr	68	44	84	67	48	67	59	60	44	46
GGGCGAGCACTTGCGG	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCTCTTGCCTTTA	alt_3975_fdr	9	4	14	7	9	11	3	9	3	6
CGATGAAGTTTGAGTG	alt_3975_fdr	122	102	161	130	95	99	94	116	85	136
GCAAGCCCGGCAATGA	alt_3975_fdr	225	147	340	273	192	190	194	241	194	245
CCCTCTAGCAAAAGCA	alt_3975_fdr	144	77	161	167	101	130	115	149	102	151
TCTGGACACGTTACCG	alt_3975_fdr	242	171	289	213	178	203	179	228	208	205
CCTATTCCCATAGGTC	alt_3975_fdr	17	6	10	21	7	10	19	16	16	12
AGTCACCATCCTGCGC	alt_3975_fdr	33	86	29	26	108	27	82	31	76	20
TAGAAAATATTGCGGT	alt_3975_fdr	24	15	24	13	18	22	14	21	10	15
ATGTGCTATTAGATCT	alt_3975_fdr	5	1	7	3	3	6	6	7	12	4
ATGAATACTCTACTGG	alt_3975_fdr	1	0	2	2	4	3	1	7	3	3
CGTTCTAGGTTGAGGG	alt_3975_fdr	26	36	39	34	31	25	31	38	30	30
TGCACCCGCCCAGCCT	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCACGTTGAACTC	alt_3975_fdr	153	115	201	151	107	157	114	139	114	124
TTCTTAGCGTCATGCC	alt_3975_fdr	134	90	166	131	101	115	96	113	91	111
TCCTTTTAGGGCTAGG	alt_3975_fdr	22	15	33	27	18	23	21	26	16	19
AAGTAAGGCTTCGAGG	alt_3975_fdr	52	49	54	57	25	50	27	46	41	33
CGCATCAGTCGGTTTA	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGCCAAGTAGCGG	alt_3975_fdr	54	34	74	59	48	61	29	43	36	48
TCCTGAGGTGCTCGCG	alt_3975_fdr	6	5	9	9	4	4	1	8	6	6
CAGAAGCTCTGCAATC	alt_3975_fdr	60	39	66	62	46	55	47	59	63	64
TGATACCGCTAGGGTT	alt_3975_fdr	25	9	20	25	10	21	13	13	14	18
TGGGCTTTTTGGATGG	alt_3975_fdr	162	117	193	144	95	161	102	156	124	155
GTGTGTGAAGGGTCGT	alt_3975_fdr	46	29	51	44	33	43	39	38	34	38
GTAAAAGCGCTTTTAA	alt_3975_fdr	75	41	62	41	47	49	41	55	43	43
TTATAGGGGTACACGT	alt_3975_fdr	13	8	22	20	14	16	14	19	13	18
AACGGTCGGAGAAGAT	alt_3975_fdr	60	41	56	70	52	52	55	66	52	52
CTACACATTTGTTTTT	alt_3975_fdr	16	15	15	26	9	11	18	16	15	11
AGTCTCTGGAAATTCT	ref_3975_fdr	188	162	220	178	168	161	129	172	183	154
TACATTGCCTGTTTGG	alt_3975_fdr	37	32	33	43	40	33	37	50	45	25
TGGTCCCTCACGGTCA	alt_3975_fdr	71	51	65	74	49	53	44	70	57	65
TCATCTGAGACTATTT	alt_3975_fdr	37	24	42	41	35	32	26	40	24	26
ATAATATTTTTGTTTG	alt_3975_fdr	125	77	201	158	61	131	71	156	91	135
CGCTTATCCGCTGATC	alt_3975_fdr	68	55	62	60	50	59	40	63	44	39
TATTAATACCTTGTGT	alt_3975_fdr	347	273	477	412	346	364	304	325	289	315
AGTCTTATACAAATTA	alt_3975_fdr	49	44	69	60	46	46	34	52	46	45
CTCAGCGCGGAGCACT	alt_3975_fdr	154	109	164	166	121	135	97	140	100	107
TGATGGTGCCCGCTTT	alt_3975_fdr	2	2	3	4	1	0	0	0	4	2
GCGTCGCCCTGGCTAC	alt_3975_fdr	135	104	177	182	100	160	104	124	124	120
TGCTCTCATTGCGAGT	alt_3975_fdr	52	42	66	40	36	39	41	52	43	50
CCTGCGCGCCAGTTGC	alt_3975_fdr	246	190	323	262	163	266	158	273	200	228
TAGTGTTCAACCCTCC	alt_3975_fdr	71	57	90	70	54	75	52	62	61	66
TGTGTAAGCGCTGGTC	alt_3975_fdr	112	82	131	94	64	99	93	103	79	92
TTTCACTTCATCGGGT	alt_3975_fdr	154	98	210	154	102	130	110	150	120	165
CTTGCTCTCGTAATTC	alt_3975_fdr	138	115	190	134	122	139	138	123	129	118
GTCGTTGATAAATTCT	alt_3975_fdr	572	413	691	545	411	538	483	581	463	505
TAAGATTAAACTTTAC	alt_3975_fdr	110	119	192	129	114	141	129	125	108	102
CCTTGTCGGATCCGGA	alt_3975_fdr	117	57	160	107	76	102	84	110	89	113
TTATTCGGTATAATTA	alt_3975_fdr	219	198	277	203	129	218	192	147	192	161
GCCCTTCAATTGATGT	alt_3975_fdr	154	113	192	180	120	136	151	166	138	137
CCCATTACTGGGCGCA	alt_3975_fdr	57	32	54	50	41	60	53	56	56	53
CAGTTCTATTTTCCGC	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
GGAGCGTATGCATAAT	alt_3975_fdr	53	31	52	65	34	61	31	50	32	45
GTACAAGTCCTAAAAT	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
AGCAATAAGTTCATAA	alt_3975_fdr	5	3	4	4	2	6	1	5	3	2
TCAGGTTGGTGGCATT	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTCAGAATTAATC	alt_3975_fdr	172	144	219	222	158	166	120	186	142	148
GGTCTTAACACATCGT	alt_3975_fdr	107	69	127	131	101	123	71	108	77	98
GTAAATTCATAACTCG	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGAGTCATTAAAT	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTCTTAGATTTCA	alt_3975_fdr	72	54	93	78	69	80	73	63	80	58
CATGAGATTTGCCATT	alt_3975_fdr	93	44	95	77	56	79	68	72	52	59
GCTAAATACATTTTTC	alt_3975_fdr	88	41	56	70	39	68	44	66	33	50
ATATGTTTCTAACTAC	alt_3975_fdr	119	95	145	130	109	118	120	96	117	110
ACGTTGCATGCACTCA	alt_3975_fdr	101	78	134	119	104	104	105	120	120	104
TGCAGGGAAGAGTGGG	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
GGATCGAGTAGCCAGT	alt_3975_fdr	15	9	23	9	6	25	19	19	11	11
AGATTTGCACCATCCC	alt_3975_fdr	33	30	43	33	32	33	22	34	29	28
GTATGAAGCGCTCGCT	alt_3975_fdr	116	75	124	103	92	121	82	83	83	99
AAATTCGATGCAACTG	alt_3975_fdr	43	19	35	34	31	42	34	44	27	23
AAATGCGTCAAATTGT	ref_3975_fdr	1806	517	2243	1885	548	1702	522	1770	542	1491
TCACATAGACTGGGGG	alt_3975_fdr	20	17	20	14	8	29	11	17	13	11
CTTACTGTTCATCTAG	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTGGTCTTGACTT	alt_3975_fdr	44	28	29	57	36	36	33	46	27	28
TGGTGTTATAGTGTGA	alt_3975_fdr	75	48	68	58	52	51	51	68	52	39
CGTGTATAACTGTAGT	alt_3975_fdr	0	0	0	0	0	0	0	0	0	0
GAATTTTTTTGTTAGC	alt_3975_fdr	373	219	459	376	264	328	225	336	253	360
TTTATTAAATGTCCCG	alt_3975_fdr	67	48	85	67	54	53	52	57	70	53
CATCACAGCTTAAACG	alt_6038_new	47	60	54	30	57	39	66	32	61	43
TTCTTGTTAATTGGGA	alt_6038_new	11	17	15	13	14	14	17	14	29	8
TGAGAATTAGGGGTAG	alt_6038_new	38	61	37	31	58	43	58	33	40	24
TCAATAGCTAGCCGTC	alt_6038_new	18	40	33	24	60	31	44	28	41	23
GACCTGGGTATCTTGT	alt_6038_new	0	0	0	0	0	0	0	0	0	0
GTCTCAAGACCCTGGA	alt_6038_new	36	71	61	41	82	42	68	52	76	35
TTTACATTATCTTTCG	alt_6038_new	0	0	0	0	0	0	0	0	0	0
CGGTCCCGACGTTAGT	alt_6038_new	4	4	6	2	7	2	10	4	4	3
GCGTCGGTAATACTAA	alt_6038_new	71	153	121	90	141	94	143	77	126	71
TTCAGCATGTGATGTG	alt_6038_new	14	29	23	28	25	20	32	13	28	12
CGACTCTAGAGGGCCC	alt_6038_new	7	21	4	5	16	12	14	5	19	13
GTTCCGGCTTATCGAG	alt_6038_new	10	3	3	3	4	3	10	5	5	4
GGGCTCCTCGTAGCTG	alt_6038_new	5	9	2	3	1	2	5	1	6	1
TCTATGGTTGGCATCG	alt_6038_new	75	114	84	70	108	73	105	64	113	62
TAGCTGCACGATTCCT	alt_6038_new	2	17	6	5	10	5	8	8	15	5
GTATATTTGATAATTA	alt_6038_new	8	4	9	7	14	7	8	5	5	6
TTCTATCCGATCCCCG	alt_6038_new	0	0	0	0	0	0	0	0	0	0
GTGGGTGTATGCGCGG	alt_6038_new	98	216	129	114	181	117	219	132	198	117
TGGTTCGCAGGCCTCC	alt_6038_new	27	40	36	21	29	22	31	23	31	15
TCCAACCGAGGTTGTA	alt_6038_new	13	51	22	24	48	13	47	19	51	13
CCTTACCATAGAGTGG	alt_6038_new	27	61	48	60	69	42	99	47	87	46
CGTACGAAGTCATCGG	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TCCTAACGACAACCGT	alt_6038_new	0	0	0	0	0	0	0	0	0	0
CTACGTCTTGTAGAAT	alt_6038_new	47	56	41	48	72	29	58	36	43	27
CTTTTAGGAAACCCGG	alt_6038_new	2	4	2	0	0	0	0	1	0	1
GTCGTTTGGCCGCATA	alt_6038_new	31	32	18	11	32	21	30	8	29	15
TGCTCCTCGTGGCTCG	alt_6038_new	0	0	0	0	0	0	0	0	0	0
GGTCCTCATGACATCT	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TTACCTATTGGATACC	alt_6038_new	47	103	55	45	81	49	85	52	108	40
CATGAGGCTCAAGTGA	alt_6038_new	12	19	9	7	14	12	16	6	12	5
TGGTCATTGGGCACTC	alt_6038_new	77	128	109	65	123	99	133	59	147	63
TTGTCCATTTCTGTTT	alt_6038_new	31	16	20	14	31	14	37	17	30	11
TTTATCCCCTGTCTTA	alt_6038_new	5	12	11	6	11	9	13	7	20	7
CCGTACAATGGGTCTG	alt_6038_new	1	12	5	2	3	1	5	1	8	3
TTCCAAAGAATTGCTC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
ACACACACCTCTGCCA	alt_6038_new	0	0	0	0	0	0	0	0	0	0
GAGTGTTCGTATACGC	alt_6038_new	85	180	113	120	176	115	210	85	190	74
TCCTGCGTTGGTCTAT	alt_6038_new	7	19	15	12	18	12	11	8	24	8
GGTGTCTTTTAAAATC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TTTGCATGATCTTTCC	alt_6038_new	29	33	25	32	46	27	27	32	48	30
AGAAACTTTGGTTTGC	alt_6038_new	37	51	37	31	55	30	40	39	50	34
CTATCGAAACACTCTA	alt_6038_new	7	23	15	3	16	12	19	6	16	9
GTGAAGAAATTCGTTC	alt_6038_new	21	41	30	24	36	23	42	19	47	23
TCTTGCCGATACTACG	alt_6038_new	0	0	0	0	0	0	0	0	0	0
CAATACCAGGTGAAGG	alt_6038_new	31	62	41	39	48	27	65	31	66	29
CAGGCACTTTGGCTTG	alt_6038_new	4	9	9	9	11	4	6	5	16	3
TGTTTATGAAAAAGTA	alt_6038_new	36	54	56	37	40	26	55	39	56	44
TTTTGATTCAGGAACT	alt_6038_new	0	0	0	0	0	0	0	0	0	0
GTTATGCTGACTAAGC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
CACGCTCTCACCGCGT	alt_6038_new	30	46	33	28	49	25	63	31	67	36
TCCAGTCATTAATCTA	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TTTTATTTTGCCATGG	alt_6038_new	76	103	88	65	90	60	84	60	105	64
AAAACCGCTTTTTGGG	alt_6038_new	0	0	0	0	0	0	0	0	0	0
CTAATTATCTCCGCCT	alt_6038_new	44	47	35	29	52	23	65	27	41	42
ACTAAATTCAGCGAGG	alt_6038_new	17	23	27	20	30	18	28	24	34	13
ATATTAGCTGAGCGAG	alt_6038_new	4	6	4	2	9	3	7	3	8	3
CACCATCCGGTTTGGT	alt_6038_new	17	20	15	16	13	16	22	20	20	5
TCGCCATTTTGTAGGC	alt_6038_new	7	26	28	21	18	18	26	18	20	20
CATGTTGGCTCGTGAC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
ATTCGCTCGGACTTCA	alt_6038_new	11	12	17	5	30	17	24	11	23	17
GTATCTTGTAAGTTCA	alt_6038_new	14	27	22	13	22	13	29	17	31	12
TGATCCGACCACGAAG	alt_6038_new	25	50	41	35	48	21	42	30	36	26
CTATGACAGGGTCTCC	alt_6038_new	25	43	15	16	27	10	30	12	39	14
GCTCTCGCAGTGGTCG	alt_6038_new	133	175	153	145	181	137	191	134	201	126
TCCGTCGGCGATCTCC	alt_6038_new	82	104	108	81	106	64	102	61	110	82
CAGAGAGACCCGGGAA	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TCTAGTAAGGGATTTA	alt_6038_new	29	56	45	23	42	32	52	19	53	20
TGGGATAAACGCGTTT	alt_6038_new	33	45	49	46	53	32	55	28	57	32
GCCTTGATCGTCCTAA	alt_6038_new	19	23	15	7	15	9	19	14	13	16
TCTTTCGCCATCTTTT	alt_6038_new	18	23	27	13	30	16	33	25	25	8
GCCATTGGGACCCGGC	alt_6038_new	2	4	0	0	1	2	1	0	5	1
GTAAGGAGCTAACATT	alt_6038_new	68	108	75	68	109	72	117	58	104	75
GTGCGTATGTTTGTTG	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TTGTATCGCTACCTCG	alt_6038_new	30	42	31	26	42	26	46	18	46	16
CCGCCTCTACATAGGT	alt_6038_new	30	52	40	42	46	32	69	39	68	27
TACTTGGTGGTCAATC	alt_6038_new	60	89	87	57	80	46	76	54	96	59
TTGCATAGGGCATATA	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TTTTATGTCTACCTGC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
ATGTCTGTGTTCTAGC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
GGCGGTATTTCAGTAC	alt_6038_new	8	2	8	6	1	1	1	1	10	5
TTGGACCTTGGTGGCA	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TCCCACCGTGTTAAAT	alt_6038_new	20	38	32	29	44	26	70	39	51	28
TGCCATTTTGGGCCGA	alt_6038_new	19	36	31	33	51	22	60	23	55	23
CGATGGATAGTAGGCT	alt_6038_new	38	43	34	26	52	26	36	27	49	34
CACGAGCAATTGGCCT	alt_6038_new	16	19	18	20	28	12	30	20	28	17
GTAGTAGACAGTTTAC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
TGGGACAGACATCCTC	alt_6038_new	0	0	0	0	0	0	0	0	0	0
CCTAAGCCGAAAGCAA	alt_5743_new	14	17	14	22	17	8	17	8	25	6
TCACGAACCGGGGTTG	alt_5743_new	79	96	108	77	110	85	104	89	96	84
ACCTGTTCACCCATTA	alt_5743_new	4	0	2	2	3	1	3	5	6	6
AACATGGTATCCTGTC	alt_5743_new	5	5	9	3	8	6	4	14	5	3
TGTCTCTTCACGACTG	alt_5743_new	123	111	166	148	118	145	109	109	141	125
GTCATATAAATCCGAC	alt_5743_new	65	84	86	82	64	59	74	74	70	63
GATTTGACCTGTGAGA	alt_5743_new	7	5	8	3	3	7	9	2	7	10
GAGCATTTTTGAATCT	alt_5743_new	204	161	242	196	131	201	164	149	173	179
CAGTCAGCAGTTGTCT	alt_5743_new	0	0	0	0	0	0	0	0	0	0
AGTTCGAAGAAAGTTA	alt_5743_new	95	74	115	101	80	99	79	95	67	71
CAACGTTAGGGGCCCA	alt_5743_new	0	0	0	0	0	0	0	0	0	0
CCATATATAAGCCCCC	alt_5743_new	24	19	28	18	18	20	17	11	13	30
ATAAGCCAAAGCGCCA	alt_5743_new	47	32	64	45	48	66	45	51	41	27
ATCAGTCTGTTTAATG	alt_5743_new	7	9	10	7	8	11	5	5	7	7
AACCCGTTTTGGGGGT	alt_5743_new	5	9	9	3	6	5	8	5	9	8
CCAAGAGAGTCGTCTT	alt_5743_new	0	0	0	0	0	0	0	0	0	0
TCTGTAAGCTCACTCT	alt_5743_new	9	3	11	5	7	8	2	8	2	1
GACTCGGGTCAACGGT	alt_5743_new	156	101	188	182	138	146	120	160	142	171
CGGCTTAACTGGCGTG	alt_5743_new	0	0	0	0	0	0	0	0	0	0
GCGTCCCATCGCTAAA	alt_5743_new	4	3	5	11	5	6	10	9	8	6
TTATCCCCACTGGGTC	alt_5743_new	0	0	0	0	0	0	0	0	0	0
GGCGCGACATATCGTG	alt_5743_new	18	5	26	34	21	19	9	11	19	14
TGATAGTTGAGAAGGC	alt_5743_new	32	23	45	48	24	37	30	23	30	28
TCTCGTTCTCCCGGTC	alt_5743_new	0	0	0	0	0	0	0	0	0	0
TCTATCAAGAAATGGA	alt_5743_new	79	60	111	77	72	75	51	69	60	87
GCACTACCGGACTTGT	alt_5743_new	20	35	26	17	27	19	22	23	29	25
GTTTATCCCGGAGCCC	alt_5743_new	68	58	107	76	58	94	65	88	69	76
TTCCCCGATTCGCATA	alt_5743_new	9	17	12	13	17	9	21	7	28	14
GAATTCATTATCATAG	alt_5743_new	82	79	116	89	54	59	86	59	88	71
CCATTGCAATTCTAGA	alt_5743_new	0	0	0	0	0	0	0	0	0	0
GCTTCTGATTGGGAAT	alt_5743_new	341	239	375	324	262	274	274	269	257	300
CCCGTATTTTCCCGTG	alt_5743_new	1	3	0	1	3	1	4	0	1	3
TACTGTGCAGTCGTAG	alt_5743_new	44	42	43	42	47	40	41	47	34	37
TTATCGAGTTCTTGGC	alt_5743_new	25	38	43	31	28	33	45	27	36	28
GCTCGGTCCTGTCCTC	alt_5743_new	84	60	82	69	82	74	50	78	55	58
CGAAACGGTGCTGGCC	alt_5743_new	125	123	172	134	102	151	111	116	136	107
ACCGTGCTGCGCAGGC	alt_5743_new	40	27	37	34	10	27	22	30	35	32
CCCTAGTCCATAGGGC	alt_5743_new	21	20	15	22	20	14	21	22	27	14
TTCCAACTACTTGTGA	alt_5743_new	0	0	0	0	0	0	0	0	0	0
CCTACTCTCCCTGCGA	alt_5743_new	3	0	1	1	1	2	3	0	4	0
CATGTACCAGGCGCTT	alt_5743_new	56	26	53	38	31	44	38	57	55	31
AACCGCACCAGTGTCG	alt_5743_new	10	11	22	16	14	10	16	18	12	17
GGAGCATGTCCGTGAG	alt_5743_new	55	35	73	55	42	53	48	72	66	58
GATTATCGGCCCTGTT	alt_5743_new	0	0	0	0	0	0	0	0	0	0
GTTTGGAGTGCTCTCG	alt_5743_new	102	82	152	132	84	103	84	92	85	76
TAGCACGAACTCTAGG	alt_5743_new	13	6	12	15	13	16	13	10	6	11
CACAGTACAGTGTAGA	alt_5743_new	30	24	28	18	27	22	26	12	22	19
TAGTTTGCCATTGTCT	alt_5743_new	0	0	0	0	0	0	0	0	0	0
ACCTTAGGAATTACAC	alt_5743_new	12	11	16	16	7	12	14	9	6	12
CTGGACCTAGTCTAGA	alt_5743_new	0	0	0	0	0	0	0	0	0	0
GAGTCTTTGACGGGGA	alt_5743_new	15	13	15	16	27	10	18	19	17	17
TGTCGGCACTGTTGTG	alt_5743_new	98	61	96	80	65	85	78	83	67	64
CCCTCCTGAATTGAAA	alt_5743_new	0	0	0	0	0	0	0	0	0	0
TTTATGTTTGTTTTTT	alt_5743_new	57	36	74	53	43	56	70	51	89	51
TGTCGCACGTACCACT	alt_5743_new	13	13	7	11	13	13	14	15	12	18
ATTCACAGTGCTCGTT	alt_5743_new	31	30	35	23	28	33	36	29	21	21
TGTGTTGGCTCCTGGG	alt_5743_new	265	182	279	288	162	211	229	261	196	181
TGGTGCCAGGCTCGGT	alt_5743_new	74	77	64	64	79	71	62	58	65	58
CGAATCCGTTCATACA	alt_5743_new	60	79	96	81	93	48	73	54	81	49
ACACATTGTTATGCTG	alt_5743_new	10	14	19	15	9	8	15	16	10	15
TGTGATTAGGTTACCT	alt_5743_new	41	25	55	44	27	41	44	32	36	29
ATGATTCTGTGAAAGG	alt_5743_new	0	0	0	0	0	0	0	0	0	0
CTGCGGTTTGCTGGGA	alt_5743_new	10	6	10	10	6	4	6	13	6	3
ATTAAATTGATGGGCA	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TTTCCACAATTCAGGT	alt_5743_new	55	53	43	52	39	24	35	37	40	40
TTTCTTATTAGACATG	alt_5743_new	0	0	0	0	0	0	0	0	0	0
TATATTTCGAGATTAA	alt_5743_new	63	54	91	80	70	56	46	71	67	74
TTAACCGCTCTGTAGG	alt_5743_new	0	0	0	0	0	0	0	0	0	0
TGATGTTATCGGACGT	alt_5743_new	43	42	54	45	47	38	61	51	35	36
TCTGCAAGTTGCTAGC	alt_5743_new	0	4	2	5	0	2	2	1	1	2
TGAGGTTGAAGCTGGC	alt_5743_new	25	16	31	28	24	29	17	25	32	20
TATCAGGTGCAGAAGA	alt_5743_new	0	0	0	0	0	0	0	0	0	0
GGAAGTCTCGTGTTGT	alt_5743_new	11	13	13	17	9	11	4	10	11	6
ATCGTATTCATTCTTG	alt_5743_new	58	53	76	60	49	58	56	41	53	54
CAATTCAATACTTATG	alt_5743_new	586	497	745	644	489	595	526	532	551	543
GTCAATCTGTTTCTGG	alt_5743_new	42	46	38	45	48	46	31	42	30	41
CACCCCCCATGTTTTC	alt_5743_new	0	5	2	0	6	2	9	0	11	1
TCCCGGTCAAACTCAT	alt_5743_new	28	60	46	23	54	38	51	19	62	25
CTCACCAAGTTTGTCT	alt_5743_new	0	0	0	0	0	0	0	0	0	0
GTCCTACCGTATAACG	alt_5743_new	43	46	54	34	39	40	54	52	44	38
TTACTCGTTAGCTAGT	alt_5743_new	97	68	123	73	74	73	71	80	67	90
CTTTCGGATGTCGGCG	ref_5743_new	0	0	0	0	0	0	0	0	0	0
CCGGAACAGGTATACT	alt_5743_new	60	108	75	65	81	47	103	47	111	46
AAACCGATAGATTGCT	alt_5743_new	90	78	89	95	58	91	86	64	82	72
CCCTTGGCGACGTGTT	alt_5743_new	17	20	18	19	18	11	13	15	22	13
GTTCTGACCCTTTACG	alt_5743_new	19	20	24	33	22	18	21	31	21	15
GCGTTCGCTCGTTATT	alt_5743_new	58	55	71	62	76	60	62	43	47	51
GGGTTTCGTCTCAGTG	ref_4926_RC	27	33	29	31	36	30	42	14	31	27
TTAGTGTGCGCAATAC	ref_4926_RC	17	36	23	26	41	17	32	19	42	17
AGCTCTCTAGACAGGG	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
TTTAATAGCAGTCAGG	ref_4926_RC	97	199	113	74	153	85	160	94	196	79
AGGTGTAAGACCACAT	ref_4926_RC	42	52	51	42	58	40	68	40	90	39
GCGATCAGACATTCCT	ref_4926_RC	11	5	12	6	12	6	15	3	12	6
TCGCTCCGATGGACTA	ref_4926_RC	1	1	4	0	3	2	1	1	2	2
CTTTTGCTGAGGATGC	ref_4926_RC	6	3	5	6	14	3	7	6	4	3
AGCCTAGCCTTACACG	ref_4926_RC	2	8	7	5	6	1	0	2	3	2
TGGTCGTATTTACACT	ref_4926_RC	1	2	1	0	3	3	0	1	1	3
GATCAACCTTTTTGGG	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
GACGGGTCTTTGTAGC	ref_4926_RC	9	8	2	1	4	7	12	2	5	6
CCAGTTAGCGTTAGTT	ref_4926_RC	4	22	13	5	30	11	30	8	33	4
CATTCAGTTTTGTGTT	ref_4926_RC	34	43	36	24	53	31	67	35	37	22
GCTTATAATGTGGAAG	ref_4926_RC	31	34	35	22	46	22	43	22	35	20
TAACCATAAGAATATA	ref_4926_RC	67	101	68	62	99	48	93	56	98	63
GATTGAAATCGTTCGT	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
ATCGATCGTATACATT	ref_4926_RC	31	48	39	21	35	30	43	26	49	14
GCATATTTGTTGGTCC	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
GAGCGTTTAAGAGATT	ref_4926_RC	18	27	12	11	21	17	13	18	27	17
CTTACGTTAGATTCAA	ref_4926_RC	24	47	45	37	40	28	67	24	51	31
TCTATACACAAGCCTG	ref_4926_RC	1	2	5	2	2	1	1	2	1	3
TATCATTGTGTCGTTG	ref_4926_RC	12	15	14	10	19	12	24	13	24	13
CCCCTTTGGTCCGCTT	ref_4926_RC	16	35	21	18	44	25	36	21	33	24
TCTACTTAGAGGTATG	ref_4926_RC	79	215	102	101	198	90	217	100	216	66
GGTTACCTTGGCATAG	ref_4926_RC	25	56	31	27	45	22	42	19	43	14
GGGTTAATTTAGTAGG	ref_4926_RC	25	26	33	32	48	27	42	23	48	21
GGAACTCGGGTTTGTG	ref_4926_RC	35	35	22	19	22	21	26	14	28	16
CCCTAGACTCAGACTG	ref_4926_RC	19	49	19	11	41	25	46	15	62	20
GATTACCCAGATCTCA	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
AGGCGGTCTAGTCGGG	ref_4926_RC	16	20	12	15	18	8	17	10	22	23
TACGCGCAACTGCCTC	ref_4926_RC	35	60	52	34	69	31	57	23	56	29
AGGGTAACCTGGTGCA	ref_4926_RC	6	2	4	7	9	1	10	6	11	3
CAAGTACGCTCAACAA	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
TCGTGGTTCATCTACA	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
TGCCCAAACTTACACT	ref_4926_RC	23	41	23	29	27	20	43	24	37	16
GCGCGCCTATTTCCCC	ref_4926_RC	38	57	49	46	61	32	48	34	50	31
GCAGCATTTCGAATCA	ref_4926_RC	29	34	17	18	26	21	28	13	17	10
GGTCTGGATACTATGG	ref_4926_RC	11	16	6	9	11	3	12	6	13	12
ATTTTAGGCTTGGTTG	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
AGTTGCCTGAGGTTAA	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
AGAAGCGGGTCGGGAG	ref_4926_RC	16	31	18	14	20	13	23	17	21	23
TTGGTAAGGACAGTTT	ref_4926_RC	16	32	22	17	25	20	36	20	28	16
CTTGAGGATGGCATTG	ref_4926_RC	16	21	23	27	29	13	28	21	30	21
TAATACAGTCTCTGTT	ref_4926_RC	4	4	6	5	15	8	13	4	4	7
TATCGCCTATTGATTT	ref_4926_RC	20	30	28	13	30	21	25	12	35	19
GCCTGTTTAACCTGGC	ref_4926_RC	20	43	32	21	54	25	57	14	39	29
TTCAAAAATGTTGATC	ref_4926_RC	16	17	13	13	21	14	26	11	20	10
ATTCAAATCTACTAAA	ref_4926_RC	10	16	6	10	11	2	12	7	16	9
GTGTGATATTCCCGTC	ref_4926_RC	27	40	29	23	62	30	61	24	50	33
TTTCATTGCATCTGAC	ref_4926_RC	10	28	9	11	13	10	19	9	30	13
AATTAGTGCTTTGCGT	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
GGCACAGTGGTTTGTG	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
GCACCTGTACAACCAT	ref_4926_RC	5	19	7	11	27	10	22	8	26	3
CTCCATTGGTGATGGA	ref_4926_RC	20	34	34	32	39	29	37	19	29	26
TCAACAATTTCCCCCT	alt_4926_RC	44	92	76	55	78	56	124	48	101	47
CACGATTTTGATTCCC	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
ATATTACATACGTCAC	ref_4926_RC	122	125	150	101	144	109	166	88	166	115
ATGGATTGAGTTTGTT	ref_4926_RC	8	10	1	11	11	4	9	2	11	2
AACTTTCCCTTCCCTA	ref_4926_RC	19	27	22	10	50	20	44	20	30	22
CTCTTGGCCCTTCGTT	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
CCAGAGAATCTGACTT	ref_4926_RC	3	9	2	1	5	0	5	1	8	0
TTATTTTAACCATTTG	ref_4926_RC	6	5	3	3	2	4	6	0	2	3
CGTTGGTAGCATGTGT	ref_4926_RC	11	17	11	12	22	15	19	16	15	15
AGTGTGTCGCAATTTG	ref_4926_RC	6	16	8	2	9	2	16	8	15	8
GGCACATCCTTCTTGC	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
CCAACAGTTTTTACTT	ref_4926_RC	48	75	51	51	111	43	85	40	77	53
CAGCATTGGCGTGTTA	ref_4926_RC	11	11	17	12	16	6	19	11	15	5
TTGTCTTGTTTGCAAT	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
GGTACCCAAGGTTCGT	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCAAGTTTAATC	ref_4926_RC	2	6	7	8	8	4	6	5	3	2
ATGCATTCTGTTGTGA	ref_4926_RC	4	14	9	9	9	5	11	13	10	4
CTCAGATAGTTCGAGT	ref_4926_RC	7	11	9	2	6	3	5	6	8	4
AGGGGGGAACGATCCT	alt_4926_RC	4	6	3	2	2	2	5	6	9	13
ATAACTATTTGGGCGA	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
TCCGCTAATTCCCATT	ref_4926_RC	9	16	7	11	13	8	20	15	25	10
AGTCCACACATAATGC	ref_4926_RC	16	48	29	16	37	12	31	17	27	14
GGTTCCATATGGGAAT	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
ATACTGTTCAATATTG	ref_4926_RC	22	27	13	27	34	23	33	18	23	12
TGGCCATGTCTTACGG	ref_4926_RC	77	118	82	60	140	81	116	66	122	82
ACGACGTCACAGTGGC	ref_4926_RC	2	4	2	2	8	4	6	3	5	2
CCCACACGCTGCGCCC	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
CCATAAACAGAAGAAC	ref_4926_RC	27	16	20	22	45	15	34	12	23	15
AGTATGCCCCGTTCGA	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
GCCTTCCTTTACTTAC	ref_4926_RC	3	42	3	1	61	4	48	3	48	1
GTTGTAAGCGCAGTCA	ref_4926_RC	20	27	20	18	25	14	40	25	32	23
GGTTTGTGTTTCGCAT	ref_4926_RC	0	0	0	0	0	0	0	0	0	0
TACTATTGACGCGCTG	alt_964_upstream	163	128	213	155	125	142	147	185	123	139
GTCGTCGAAACGCCAT	alt_964_upstream	125	78	137	143	72	120	86	124	66	123
GAATTTCCCATCAGTC	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTTCGGCCGATCG	alt_964_upstream	310	250	355	303	212	292	233	258	253	242
GTGGGGGCGCGTGCAC	ref_964_upstream	171	128	175	152	122	145	127	167	148	153
CTGACTCTGACATCGG	ref_964_upstream	18	17	17	9	11	6	13	12	13	8
CCGTGAGGGCGTGAAT	alt_964_upstream	4	2	2	4	0	3	3	2	0	0
CTTTCGGATGAATTGA	alt_964_upstream	28	23	47	21	24	39	20	29	32	23
TAGTAGCATATTATCG	alt_964_upstream	108	79	126	105	91	106	86	103	94	78
TCATTACCATGAGACA	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
GAAATTGCTTTGCCAA	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTGATATCTTGT	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTCCCTATGCGGG	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCATATTTTGTTA	alt_964_upstream	38	38	50	42	20	38	32	42	54	46
CTTTCTCGAAGTTATG	alt_964_upstream	98	99	139	136	78	101	93	123	79	108
CGTTTTGTATAGTTTT	ref_964_upstream	88	62	101	95	71	80	69	80	71	92
CTCTCAGTGCTGTAGC	alt_964_upstream	36	49	52	40	63	42	49	40	43	35
ATCGACATACGATAGA	alt_964_upstream	42	26	47	42	40	24	37	45	33	29
TGTTTCCGACTGTTTC	alt_964_upstream	107	88	128	132	103	81	107	101	90	85
TTGGCTACGTAGTCCT	alt_964_upstream	85	55	90	83	88	83	50	78	86	80
GGAGAACGCTCTGAAC	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
GGGAACTTTAGAACGT	alt_964_upstream	31	17	35	16	20	20	17	20	29	19
CTCGCAACGAATCATT	alt_964_upstream	161	116	194	173	131	152	119	176	163	144
CCCAGGTGTATTTTTA	alt_964_upstream	123	154	155	129	160	156	173	151	200	116
ACCAACAGTTTGTCTT	alt_964_upstream	67	78	92	68	55	46	71	60	79	60
ATTGGCCCCTTTTCTA	alt_964_upstream	51	43	46	47	34	32	42	36	37	48
TTACCTTCCTTCTATG	alt_964_upstream	108	76	116	120	73	88	106	84	67	80
TCTCCCCAATTATAGA	alt_964_upstream	4	21	9	11	31	6	29	7	21	4
GTGGCGCTTCTATTTC	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
CGGAACAGAAGTTCGT	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCTACTAGGCTAC	alt_964_upstream	16	8	19	19	13	13	14	13	20	14
CCGGCTCGCATGGAGG	alt_964_upstream	40	24	59	43	19	38	30	40	36	36
GTGTTGATCCCGAGTA	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
ATAAGAGAAGTTCTTT	alt_964_upstream	136	83	117	133	115	112	103	112	99	134
CTACGTAGTTGATGTA	alt_964_upstream	111	139	152	142	123	122	117	118	144	111
GTCTATCTTTTTCCTG	alt_964_upstream	40	25	42	28	38	40	26	38	27	43
GAATGGATCGTTGCAG	alt_964_upstream	25	6	14	21	9	13	9	17	23	6
GTAACGTGGTGCTTAA	alt_964_upstream	29	32	32	39	27	23	48	43	38	36
GGGTTTTTTCGCATGT	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
GACCCGGCTATTTGCT	alt_964_upstream	31	18	34	32	23	21	23	36	30	24
AATTAGCCCCAATGTA	alt_964_upstream	36	34	59	41	31	38	50	35	42	44
CGAAGGAACTCTATTT	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
AATAGTACTCCTACTT	alt_964_upstream	14	15	27	18	19	30	18	25	21	23
AACGCGTGGAGGACAG	alt_964_upstream	102	54	118	89	52	94	86	78	89	76
GTTCCCCTCACCTTGT	alt_964_upstream	23	17	32	23	19	16	19	23	14	23
GATGAGTGTAGTAAAC	alt_964_upstream	68	72	76	80	64	84	65	72	61	62
ACAAAAGGATTGTTTA	alt_964_upstream	43	27	30	50	40	29	32	38	30	29
GTTAGTGCAAAATCTC	alt_964_upstream	26	33	46	43	29	38	38	39	39	28
TGGGGTTGGGGCCTTC	alt_964_upstream	72	65	109	76	84	75	68	74	58	74
TCTTTCTTGTATTTGC	alt_964_upstream	41	34	51	45	24	52	31	36	28	35
TGGGTGCATTATGCGT	alt_964_upstream	59	60	95	91	52	64	52	51	55	53
ATACCGCTGTGGCTGC	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTTTGCATTGGGG	alt_964_upstream	162	140	237	169	134	169	133	155	155	160
CGTTTCTGGATCTTAA	alt_964_upstream	134	85	147	114	70	82	85	125	84	116
CGGGTACACTGTGTTA	alt_964_upstream	80	70	85	74	55	89	71	79	68	70
GTAGACGATATTTTCT	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
GACACACTGAGCTCTC	ref_964_upstream	19	8	25	16	14	13	13	23	8	11
CAGTCTATCCCGTCGT	alt_964_upstream	71	94	88	88	112	46	117	71	124	44
CTGGCAAGTGGGTTAT	alt_964_upstream	32	20	34	26	24	31	29	32	16	36
ACGAGATTTTGTTCGC	alt_964_upstream	430	333	541	490	344	409	370	400	354	381
AAGGATTTACCCGTAG	alt_964_upstream	76	57	107	85	62	71	61	48	65	58
TCCTATCATTGGTCGC	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
TCCATCAACAAACAAG	alt_964_upstream	10	3	10	8	13	10	11	10	9	4
GTGTGAACATACTCGT	alt_964_upstream	0	0	0	0	0	0	0	0	0	0
GAGTACCAGCGTTTAC	ref_964_upstream	32	22	24	21	25	19	30	32	28	19
AATAATCGAACACAGA	alt_964_upstream	39	19	55	35	15	40	33	33	31	39
GTAGTTTGTGTGTGGA	alt_964_upstream	4	3	4	7	5	4	0	2	11	7
ACATGAGCGGTTAATG	alt_964_upstream	227	195	247	223	173	166	158	207	163	181
CTTGGCTAGTAATTCG	ref_2374_upstream	174	176	201	172	200	168	196	156	194	139
GTCTAAAATCGTTCAA	ref_2374_upstream	37	47	51	55	49	49	69	53	62	34
GCCGTCTGCTCTCGAT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GGCCATCCATTTGTCA	ref_2374_upstream	21	29	31	20	36	24	27	21	38	22
CCTGGCAGTATCGTCC	ref_2374_upstream	41	45	45	32	36	28	61	36	56	35
GGCGCTCTGTTCTTTG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GGTACCGTCCAGATTG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTCGGCAAAAAAA	ref_2374_upstream	18	23	33	31	35	31	31	30	33	26
TTTATGCGTCTTGGGT	ref_2374_upstream	51	45	44	30	30	20	50	29	50	25
TACTGTCAATCGTAAT	ref_2374_upstream	41	48	61	43	45	39	51	35	45	36
TATACCACCGACATGG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
AACAGAAGTTGCCCCA	alt_2374_upstream	61	92	79	70	109	67	80	44	83	58
CAGATTTTGACAAGCG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CCCTACCTGTGAGTAA	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGTCTAACGATTG	ref_2374_upstream	3	3	7	6	6	0	12	6	3	2
TGGAGTGATGCCTTGC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCGTGTAAGGCTT	ref_2374_upstream	44	49	40	49	43	34	54	30	58	42
TTTTGGGGATTTCTCT	alt_2374_upstream	14	12	12	8	15	12	15	8	6	7
CGGCCCGCAGCATAAC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCGGTCTTTTAAC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CGCATTCCGCTCCTCA	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCCTGAAAGGTC	ref_2374_upstream	10	9	12	11	6	17	8	8	9	5
TGTGTGCTAATCTCTT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TATGGAATTGTCGTAG	ref_2374_upstream	65	77	82	48	68	57	77	50	77	52
TGCAGATCCTAGCGTA	ref_2374_upstream	38	53	41	42	69	29	50	29	42	30
TTATTTCCTGATACTG	ref_2374_upstream	6	11	21	7	25	8	20	14	13	16
TTTGACCTGGTCTTTT	ref_2374_upstream	65	74	73	61	90	80	94	71	101	54
GCTCCATGTTCCAAGG	ref_2374_upstream	111	120	141	98	136	103	159	95	154	88
TCGAACATCAACCCTC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CTAAATTGTTATTCAC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTCTTCCTTCGCC	ref_2374_upstream	62	55	80	64	62	60	90	48	70	47
TCTACTGCTTTCGGCC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TATATAGCGAGCTCGG	ref_2374_upstream	44	72	52	61	53	49	64	43	61	36
AATGGCTATTTTCGAC	ref_2374_upstream	27	27	32	26	27	27	29	22	46	20
GTTCAGGGGCCGAAGT	ref_2374_upstream	1	1	0	0	5	2	2	0	1	3
TCAGGAGGGTGGGTTC	ref_2374_upstream	117	112	143	111	109	98	129	113	140	85
ATTTCGCTAGACAAGT	ref_2374_upstream	125	164	161	133	167	112	158	123	178	102
TGGCAATAAACTTCCG	ref_2374_upstream	33	31	42	30	36	32	31	28	27	18
GTATATACTTGCCGCG	ref_2374_upstream	18	22	30	26	35	13	39	17	29	24
AGTGTTACCTTGAGTT	ref_2374_upstream	92	111	93	106	98	89	118	82	132	83
GGTCGATTTCGGGCAA	ref_2374_upstream	49	60	60	53	63	50	58	52	54	35
TGACTGGGCATAGCAG	ref_2374_upstream	3	4	8	5	5	4	10	9	5	6
GTTACCGTTTCGTTCT	ref_2374_upstream	14	13	17	12	18	18	8	6	21	16
CTCCGTGATGAGAGTA	ref_2374_upstream	15	14	14	13	12	16	20	15	18	19
GATGCTTTGTGGGTGC	ref_2374_upstream	3	6	6	9	12	2	12	5	3	4
CGCCATCATCAAGCAG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TGGACGCATATTGGGG	ref_2374_upstream	47	40	47	40	37	30	39	36	39	24
CGGTCTTTCCATGGTG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTTGTTTGTGATC	ref_2374_upstream	23	25	32	21	27	29	27	26	24	24
ATCAGGTGACGATGGT	ref_2374_upstream	17	17	16	18	8	15	14	14	23	21
ACCTCAATTTTTCGGT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGCAGCCCATCTC	ref_2374_upstream	47	56	36	54	71	48	64	51	57	33
TACGCCTTCATTCGCC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TCTGGTGACCGCGCGG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CTATCCGCAGTTTGGC	ref_2374_upstream	29	36	38	35	52	46	38	37	62	31
GCTGCTAGTGTGTGAG	ref_2374_upstream	3	10	8	14	15	11	11	3	24	8
GTCACTGGTTTCTACG	ref_2374_upstream	10	30	26	21	29	13	31	11	25	9
AAAGCTATTTGGCTGG	ref_2374_upstream	24	31	23	33	30	24	36	20	33	24
AAAATCCCTCGATTAC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GGTAAGTCCGCGCCGG	ref_2374_upstream	13	8	6	4	13	10	8	7	8	4
TGTAGCCAATTGCATT	ref_2374_upstream	0	3	2	1	0	0	2	2	1	1
TGTGACTTTACTCGTG	ref_2374_upstream	43	64	39	40	58	30	52	25	57	46
CAGATAGTCAATGATC	ref_2374_upstream	433	552	512	427	552	393	589	396	558	421
GCGTTATCCTCCATTA	ref_2374_upstream	134	146	208	121	153	128	146	118	175	126
ATTCCGTTTACAGAGG	ref_2374_upstream	47	50	55	51	52	46	47	55	45	39
GTCGTCTTTAACAACT	ref_2374_upstream	6	4	3	6	5	2	5	1	5	1
GGCTCACAAATCATAT	ref_2374_upstream	18	21	24	19	18	19	21	12	16	34
TCATTCGTTCACGCCA	ref_2374_upstream	10	13	8	18	9	10	13	16	11	14
CTGGTGTGTATTTTTC	ref_2374_upstream	4	3	4	8	9	2	13	4	7	1
ATGCGCGTATACGTTT	ref_2374_upstream	36	31	27	16	33	22	39	26	42	16
CTACGCCCGTAAATAC	ref_2374_upstream	35	63	59	39	58	55	74	47	78	31
GGGTATCGCCTATGAA	ref_2374_upstream	25	34	31	34	31	26	29	26	32	39
TCCACGGTATTTGATT	alt_2374_upstream	16	35	26	24	30	16	33	20	31	21
CTGGACTTTTAGTAAC	ref_2374_upstream	4	9	7	11	8	3	5	3	10	9
CGTCGCTCTAAACTAT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCCGTAATACATT	ref_2374_upstream	55	63	81	71	82	77	65	57	59	39
CTAATGGGAATACTTC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GATATTGAGAATCCAA	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGCATAAAACCCT	alt_2374_upstream	141	235	168	173	183	131	212	148	219	136
CTTTCCAGTCCATTCG	ref_2374_upstream	35	40	37	36	45	27	44	27	49	42
TTAAAATCCTAGTGTG	ref_2374_upstream	2	2	3	5	3	2	1	3	3	2
AACTCCCTACTCAGTC	ref_2374_upstream	15	26	7	14	24	15	31	5	32	18
ACGCCTAGCCAGTGCG	alt_2374_upstream	6	11	6	13	9	8	15	9	13	3
TTAAGAGCCTGCCCGG	ref_2374_upstream	2	6	8	3	1	1	1	6	2	4
TTGTACGGAGTGAGAT	ref_2374_upstream	13	21	28	23	23	19	30	17	24	22
GAAGCGTACGATACAC	ref_2374_upstream	63	59	78	58	55	34	57	47	62	58
CCTCTAGCATAATACT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTCAGTGGAAGCT	ref_2374_upstream	16	15	21	14	19	14	11	11	21	12
TCTCATTAATAGCGCT	ref_2374_upstream	41	52	60	39	52	46	53	46	43	49
TACGACTGCCCATCTT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CCATTCGTTTTAACGC	ref_2374_upstream	6	11	12	8	16	11	13	9	13	8
CAGCCGGTTATCCTAG	ref_2374_upstream	45	66	50	50	66	46	56	31	79	34
ACATGACTCCCAGTGT	ref_2374_upstream	10	21	16	17	19	8	19	10	22	20
GTCGGGCCCCGTTTGT	ref_2374_upstream	75	77	74	91	65	64	54	64	83	59
TACAATTAATTTTGTG	ref_2374_upstream	7	8	12	11	10	8	11	8	4	7
TCCGGTGAGTTCGCAT	ref_2374_upstream	15	11	13	15	13	5	15	14	15	8
TGGAGCATTGCTAATT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCGAATCAAATGG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTCCTTAGAAGGG	ref_2374_upstream	0	0	0	1	0	0	0	1	1	0
ATCGGGTACACTGGAT	alt_2374_upstream	88	86	102	86	88	83	84	66	90	72
ATTTCATTCACTCGTC	ref_2374_upstream	28	23	26	24	22	21	26	31	35	13
ATTGAGCCGCCAGCCC	ref_2374_upstream	37	37	30	32	44	24	27	28	38	20
CATGTCGCTGTTAAGC	ref_2374_upstream	9	10	10	4	7	6	8	7	8	7
TTTAGTCCGGGCGTTG	ref_2374_upstream	5	10	12	14	7	11	17	13	13	9
CCGCAAACATGTTAGT	ref_2374_upstream	14	8	11	14	18	17	9	6	12	12
ATGGATAATATTGATT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TGTGATAAATCATTCC	ref_2374_upstream	40	50	54	41	56	46	41	58	51	33
GATCGTGCGGCACTCC	ref_2374_upstream	6	11	3	8	11	4	14	3	9	3
ATGGGAGATTGTAAGG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TATTGAACCTTGTTTG	ref_2374_upstream	9	18	18	19	17	11	26	17	17	13
GGATCTATTCTTGCTC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTTCCTGCACCTA	ref_2374_upstream	121	135	151	145	184	139	181	119	209	133
CGGCTTGCCAGATTTA	ref_2374_upstream	35	29	28	25	38	26	35	29	45	22
CTGTTGATCAAGACTC	ref_2374_upstream	6	16	15	7	14	6	4	18	5	6
ATACAAATTGTGATGT	ref_2374_upstream	58	47	38	60	60	47	80	51	63	41
CCATAACGTTCTCGTT	ref_2374_upstream	13	19	11	19	22	15	28	15	14	10
CTGCTATAAATTCAGC	ref_2374_upstream	15	20	35	23	29	12	27	15	26	28
TCTTCTTCTTTATAAC	ref_2374_upstream	16	18	15	24	20	10	12	19	21	6
TACTTTCTATTTTTCA	ref_2374_upstream	53	56	79	63	48	57	51	64	59	56
AACAGGTACCACTGTA	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TTTATGCTCTGTATTA	ref_2374_upstream	70	93	95	62	82	64	98	70	99	60
TATCGAAGTATGCATG	ref_2374_upstream	21	29	31	25	32	29	37	27	26	27
TTTTGGTCAGCCACAC	ref_2374_upstream	6	11	6	3	11	10	6	5	8	8
ACACCTCTGGCTGATG	ref_2374_upstream	9	18	14	17	11	4	16	9	10	9
GTCGCCGCGCTTTTAT	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GGAGGTGGGGAGATTC	ref_2374_upstream	10	21	14	18	14	14	20	14	21	10
TAGGTGCCAATAACTG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GGTATTTTCCCTGAGT	ref_2374_upstream	115	122	100	79	118	119	112	83	131	99
AACTCCACTTCGTGTG	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCTTCGTAAAGTC	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
ACGTAGTAGTCAGCAA	ref_2374_upstream	41	37	44	30	45	35	36	48	49	35
GTGGGATGGTGTGGTT	ref_2374_upstream	10	15	14	18	16	11	11	13	12	8
CTCGGAAGCTGCGTCA	ref_2374_upstream	20	21	28	15	37	26	28	32	29	36
CCAAAACACGGAAGCT	ref_2374_upstream	10	4	9	9	8	6	8	4	8	3
CTGTTGAGCTTCTGGA	ref_2374_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTGCAGACCAACG	ref_2374_upstream	56	41	44	40	67	47	54	52	64	56
AAGCTATATTTCCGCT	ref_2374_upstream	2	3	2	5	3	2	3	2	2	4
ACTGGTTTCACTTGTC	ref_2374_upstream	27	71	32	34	75	17	82	20	75	21
GGCTTGATCATGACAT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
CCTTAAGTGGCCGTCA	ref_5240_RC	5	6	10	19	11	8	4	9	6	7
TTTACAAGGTTGTCCG	ref_5240_RC	80	70	97	76	69	87	66	67	68	73
TCACTACTTATACTTC	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
ATGTGGGTTGTAAATA	ref_5240_RC	54	33	56	44	25	36	30	39	23	39
CTCGGTCTGAGTGATT	ref_5240_RC	19	12	10	9	10	10	15	17	10	11
CCCTCACGGAGCCCAA	ref_5240_RC	27	10	42	30	20	34	18	27	22	35
GCAAAGGTACCTTGAC	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
TTATCCTAGTCTGGCG	ref_5240_RC	53	35	73	44	21	49	41	35	29	34
ATCGACTTACTGAATC	ref_5240_RC	14	8	15	11	9	10	9	6	18	10
TCTGGTTTTCGCTCCT	ref_5240_RC	84	54	78	67	68	74	57	86	51	56
TTATGCACACCCAGCT	ref_5240_RC	117	87	134	105	69	96	72	70	61	75
CACAAAACTACTAGGG	ref_5240_RC	204	157	277	217	164	190	138	194	187	198
TTGTCTTGTCATTGCA	ref_5240_RC	89	51	78	92	59	77	62	69	52	77
AGGAGAGGCTTCCAGA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
CCTGAGTGGTTTGATT	ref_5240_RC	4	2	3	5	4	4	4	4	4	4
CAATCCCATTTGGCAT	ref_5240_RC	3	1	10	9	6	2	3	4	3	5
ATCATGCCAACATCAC	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GCAATCCGAACTCTTA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
AAGGAAGCGCTTAGTC	ref_5240_RC	18	1	14	13	12	12	6	12	12	12
CGCTGGTGCGGTGTGG	ref_5240_RC	13	9	20	13	9	13	16	13	6	13
ATTAGCAATACGCTGC	ref_5240_RC	28	44	53	46	27	38	32	39	21	35
CGAAGCAGTAAACGCC	ref_5240_RC	381	317	494	387	312	417	311	425	324	347
TTGAACGGTGGTCTGT	ref_5240_RC	71	61	89	74	37	75	54	49	51	57
AGTTTGGAATGCCAGA	ref_5240_RC	17	9	17	10	11	10	11	19	13	10
GGACCACAGCATACTT	ref_5240_RC	124	102	170	110	93	135	106	118	102	100
TAACTTTCCGTACCTT	ref_5240_RC	105	66	127	100	70	86	74	77	81	84
CTTTTACGTAGTCTTG	ref_5240_RC	18	32	23	26	25	21	23	25	36	28
TAGATCATTCTCTTAA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GACTATTTCGGTGGGC	ref_5240_RC	46	42	46	49	48	41	30	51	52	46
TGTTCATATGAACCTC	ref_5240_RC	142	120	171	151	141	127	139	132	103	117
CGGTCTCTCAGGGGAA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
AACATTCAACCAGTAT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GAGATACCAAATTTCC	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
CTCCGAAATGTTAGGA	ref_5240_RC	17	16	14	14	14	19	18	7	8	11
CGCACCGCCTGTACGA	ref_5240_RC	70	44	67	67	42	61	41	59	43	57
ATGATGGGAAGGTTTT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
TCGCCGCTTTATGTGC	ref_5240_RC	29	36	32	20	28	33	31	21	45	22
GTATAGATTTTTAAGC	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
TGCGGCATACGCCATA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
AGACCACAGCATACTT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
AGCTGGGCACGGAAGA	ref_5240_RC	77	59	99	68	47	66	64	77	58	63
GTGTGGGTTTGGCTAC	ref_5240_RC	23	16	26	25	27	18	14	19	18	15
ATATCTCTTGATTAGG	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
AGACGTTAGAGCGTAT	ref_5240_RC	20	22	32	23	14	23	17	22	24	28
ATCCGTTACGACCAAC	ref_5240_RC	5	18	6	7	13	6	6	6	15	4
GCATACAGTACCAGGG	ref_5240_RC	90	73	89	86	68	84	60	83	62	71
ATTGCTCATAAAGTGG	ref_5240_RC	105	85	124	120	101	95	90	91	86	106
TTAGAAAGCTATGGAA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GCTCTCCAGACTTTCT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GCCGCCGCCATTCTAG	ref_5240_RC	96	66	149	136	98	108	79	96	86	93
ACCGTAGCCCTACTTC	ref_5240_RC	28	29	24	28	29	19	21	28	35	35
TGTAAGAGCGGTGGTT	ref_5240_RC	8	10	15	20	13	8	14	11	18	12
GCGAGGACCTTCGAAG	ref_5240_RC	215	151	247	258	169	199	147	195	170	193
GTCGTTCCCCACCATA	ref_5240_RC	41	42	66	45	38	36	58	56	32	49
GTTGCCTTGTATATTG	ref_5240_RC	46	41	58	52	37	48	40	45	36	54
CGACCTAGGTCAAGCC	ref_5240_RC	24	13	28	22	8	16	9	11	15	10
AACCTAATCTATATCG	ref_5240_RC	10	6	13	9	13	18	13	11	10	20
GGGAGTATCGCGCCAT	ref_5240_RC	53	37	65	57	25	53	43	48	23	35
AAGCTTACCATATGTG	ref_5240_RC	65	67	48	52	54	41	68	44	63	41
CTTCTAGCAGTACATC	ref_5240_RC	100	85	125	127	104	97	92	132	92	95
TAGGTCCGAATTTTTT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
CGATCTGAGCAGTATG	ref_5240_RC	4	5	16	7	16	7	3	10	11	4
CGCAGCTCTGTAGGTC	ref_5240_RC	71	56	103	75	54	71	62	79	66	68
TTTTCCATCCCTCTGT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GTCCCTGTGAATCCTA	ref_5240_RC	30	24	32	26	13	25	21	36	15	24
TCATACCTACTTCCTT	ref_5240_RC	170	165	211	174	159	136	150	161	191	183
ATCGCTGATGTGAGCG	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
TCTACGGAGCACTAGA	ref_5240_RC	11	6	10	21	12	13	12	13	7	10
TCGTACGGCTTATGCA	ref_5240_RC	20	16	31	31	22	28	23	22	29	31
TTTATTGTGACCGGTA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
TTTATTGTGCAGCCAT	ref_5240_RC	65	38	62	66	39	67	33	58	31	61
ATCTCCACAGCCTTGG	ref_5240_RC	12	23	14	17	14	21	24	29	14	12
GCATGGTCAATGCGTC	ref_5240_RC	120	85	142	94	105	115	98	118	101	103
GTCAATCTCGAGTGCC	ref_5240_RC	100	63	83	92	71	92	87	94	81	82
CCGTAATGAATTTTGC	ref_5240_RC	92	57	102	114	77	79	72	73	63	79
GGTATCATTCCGCTTT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
ACTGCTATACCTTAAT	ref_5240_RC	51	41	53	45	35	57	31	27	36	30
ACCGTCTGGGACAGAC	ref_5240_RC	16	70	21	25	76	28	74	24	61	16
ATACACTTACATATCG	ref_5240_RC	21	15	16	5	14	12	14	15	9	9
GACTCGTAGGTTTACT	ref_5240_RC	128	106	138	121	114	117	102	118	103	121
ACATGATTGACCCTTA	ref_5240_RC	134	94	173	118	96	139	90	127	119	122
TTTGTGTCATTAACCC	ref_5240_RC	78	70	97	69	74	69	96	72	91	68
CGTTTCTGTGATGGGT	ref_5240_RC	7	8	13	15	4	3	7	9	2	10
GTGGTATAGTTTGCCC	ref_5240_RC	80	74	97	76	61	79	73	62	65	68
AGATGCCGAAAAGTTT	ref_5240_RC	9	5	5	10	7	17	8	10	8	18
TGACCGATGCTCACAA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
TGGTCATTTTTGTGTA	ref_5240_RC	98	71	103	99	67	66	73	77	67	84
TTTCCTAGGTGTGTAT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GAGCAAGTTGCCTGCG	ref_5240_RC	56	37	75	46	26	52	38	59	36	40
GTCTCGAGACCATGAG	ref_5240_RC	9	10	19	11	9	11	6	16	11	8
TTTCGTAGGGACTTAG	ref_5240_RC	17	5	11	11	4	6	7	10	7	20
GACTCACGATTCTAGA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
TTATTGTACCGCCAGG	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GAATCTATGCACCCGC	ref_5240_RC	52	39	82	69	47	74	49	45	43	56
ATTGTTTCATAAAATA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GTTTCCACATTTCAGG	ref_5240_RC	27	20	35	19	15	27	18	26	28	37
AACACACTCGTTGCCA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
AATGCTGCTTTGGCAT	ref_5240_RC	17	17	18	12	8	14	9	14	10	13
CAAAGCTTGTTCATAT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
ATATCCAGCTGAAAGA	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
CTTGGCGCGACTCGGG	ref_5240_RC	60	39	83	62	38	56	41	61	47	47
TCTAAAGGGTTTCCGG	ref_5240_RC	78	52	110	92	48	93	68	73	80	88
TCTCGTAGCCCTGGCC	ref_5240_RC	67	50	70	64	57	66	54	55	60	51
CCCACTAATAGAATGA	ref_5240_RC	62	46	62	50	36	42	33	56	57	57
ACAGGATTCTTCTTTT	ref_5240_RC	35	23	31	44	20	43	30	24	30	27
TCCATAGTATCCCGGC	ref_5240_RC	30	27	35	36	17	28	20	36	27	33
TCAGCAAATTGATAGA	ref_5240_RC	24	35	30	23	21	25	20	31	27	25
CTTCTTGCCATATCGT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GGCTTTGCGAATTCAC	ref_5240_RC	28	29	39	34	23	33	16	27	27	30
CTAACTTCTACATAAG	ref_5240_RC	26	17	32	27	22	31	21	24	21	22
TCCATTAAGATTAGGT	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GACAGCACAATTTGGT	ref_5240_RC	4	4	9	11	4	7	4	6	7	8
CTTCAATTATTTGGGG	ref_5240_RC	12	6	22	13	7	17	7	17	6	9
GTCTTATACACCGTGC	ref_5240_RC	28	23	18	19	11	18	20	18	11	13
AAACGTATACCATCTC	ref_5240_RC	0	0	0	0	0	0	0	0	0	0
GTAAATGGCTCGAATT	ref_5240_RC	20	10	19	18	11	18	13	20	13	20
AATGTGCCCTTAAAGC	alt_5654_new	17	32	22	16	31	13	30	14	43	16
CATATCCAGAACTATT	alt_5654_new	3	25	6	16	26	8	38	13	24	1
CTTAGTAATCTAGCTC	alt_5654_new	15	63	24	16	55	17	51	17	62	10
TCTCAGGTTAAAAGTA	alt_5654_new	5	13	5	7	10	1	13	4	18	4
GAATCACATTGTGGCT	alt_5654_new	10	25	10	7	15	9	26	9	30	12
GAATTTCGTCTCGTGC	alt_5654_new	0	0	0	0	0	0	0	0	0	0
GTTTAACCAGTGGATT	alt_5654_new	3	30	11	6	28	8	16	3	23	3
TTAGCATATAACGCCT	alt_5654_new	2	12	7	2	5	6	13	3	10	6
AACTTATTCCACACTT	alt_5654_new	0	0	0	0	0	0	0	0	0	0
GCCTTTTCAATGTGGT	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TATTCGTTACGGAAGC	alt_5654_new	3	27	10	10	11	11	30	12	32	8
GTTACTTGCAACGGTC	alt_5654_new	5	10	8	4	11	5	14	4	14	1
CTTAGGCTTATATGAT	alt_5654_new	12	24	1	4	16	9	15	3	12	1
CGCTCCGGGGTGAAAC	alt_5654_new	2	24	14	7	26	11	22	15	21	8
TCTTCCTCATCGTCAT	alt_5654_new	2	4	3	1	4	0	9	4	9	0
TTGTGCGGTTTCCGTT	alt_5654_new	7	8	1	3	10	3	14	6	12	3
ACCCGCTCCGTTTGGA	alt_5654_new	11	32	16	8	47	11	45	14	59	8
CTGCATCGGCTCCTTC	alt_5654_new	43	69	30	42	95	22	82	36	90	32
CTTCAGAGTTCTGTCA	alt_5654_new	19	52	18	16	37	15	37	17	57	12
GTCCCCCATATCTGGC	alt_5654_new	8	29	11	14	26	16	21	11	30	9
CCTCATGCGTCCTGCC	alt_5654_new	1	1	2	0	2	0	2	2	0	1
ATTTCGGCATCTCCTT	alt_5654_new	7	12	9	8	14	6	12	5	13	3
CGATATAGCAAAATCT	alt_5654_new	0	1	0	0	2	1	1	1	1	1
TAACGTCCAGGTTTCC	alt_5654_new	3	11	3	11	9	4	9	4	8	5
AATTATTTCCTACTCC	alt_5654_new	9	29	17	12	35	16	45	6	29	8
ACGGAGCTATCACAGT	alt_5654_new	8	25	15	9	30	8	21	7	32	10
TATCTCTGCGTCTTGC	alt_5654_new	18	28	19	18	31	15	22	15	47	17
GGGATTATTTGACAAT	alt_5654_new	16	88	40	36	67	36	99	27	92	30
CAACACACGGCCAAAA	alt_5654_new	2	2	0	0	10	1	6	2	8	2
TCCCGGGGTGTATCAG	alt_5654_new	12	31	15	9	44	9	46	13	60	5
CTCGCCTGTACAGTAA	alt_5654_new	10	51	15	20	36	19	50	16	43	8
TTTTTCTTTGCTATCA	alt_5654_new	5	24	16	16	19	6	27	6	26	10
TGTGCTTTGGTGCTGT	ref_5654_new	116	362	140	102	350	134	360	97	373	112
AAGACCCATCTGTGGT	alt_5654_new	0	0	0	0	0	0	0	0	0	0
GGATGATTCAAAACAG	alt_5654_new	0	0	0	0	0	0	0	0	0	0
CTAACCAGCTCGTTTC	alt_5654_new	28	65	30	26	65	41	56	21	64	20
CATTTGTTAAGCCCAA	alt_5654_new	9	29	9	9	56	12	38	11	46	16
GTTTCTTTGGCAATCT	alt_5654_new	17	47	19	14	47	13	56	20	67	21
GGCAGGTAAAATAGTG	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TCTCCGAGTCCTGGCG	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TCGGAAACTTGTTAAC	alt_5654_new	23	79	23	41	74	37	93	8	74	29
ACTTAGGACATTGCGT	alt_5654_new	8	19	19	8	29	18	28	6	14	4
TATGTCACTCCACAGC	alt_5654_new	2	12	0	0	8	0	11	1	5	5
TCTTAATGGTTCCATC	alt_5654_new	5	15	7	7	14	8	15	7	14	5
AAATCCGCTTTTTTCT	alt_5654_new	18	16	16	9	17	14	7	17	22	11
TATAACGATTCCGACA	alt_5654_new	33	59	36	35	80	25	59	21	69	26
TCTCTTTTAGCCGCCC	alt_5654_new	2	12	7	2	11	0	8	2	4	3
GCAATTGCGATCTAAA	alt_5654_new	2	12	2	0	5	2	7	4	6	4
TGGAGTATACCATGTT	alt_5654_new	3	14	8	7	17	8	16	6	20	3
CTTAAACCATTCCCTC	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TAGGGGCTTACATCAG	alt_5654_new	1	5	2	0	4	3	9	0	6	2
TCGTCAATCTATTCCA	alt_5654_new	0	0	0	0	0	0	0	0	0	0
ATCCTTCCTTGTGCTG	alt_5654_new	7	25	5	8	24	6	17	8	17	8
TAATCGCCCAGCGCTT	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TGTGGGACAAAGTGAC	alt_5654_new	3	14	2	5	9	8	12	6	14	3
TTAGTCGATCCTATGG	alt_5654_new	9	21	15	8	24	5	26	8	23	1
CCTCTCAGCTAGGTTC	alt_5654_new	13	28	8	10	26	8	20	6	42	7
TATTAGAGTAATGTTG	alt_5654_new	1	2	3	2	3	2	8	3	10	1
CATTCTTGGAACCTTG	alt_5654_new	22	41	24	31	31	15	44	9	54	13
ATAGTTAAAACAGTAG	alt_5654_new	12	42	12	16	36	10	42	13	34	14
GTCCGTGCTTCCGGGG	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TGTCTATGCCGTTGTC	alt_5654_new	7	14	4	5	12	2	12	2	6	2
CAGCCGGCCTTCGTAC	alt_5654_new	11	64	5	10	53	6	62	8	60	8
AGCGTGTACGTGACTG	alt_5654_new	13	32	13	8	49	7	34	6	36	14
TTCTGATAAGCACACC	alt_5654_new	11	22	12	8	25	10	26	6	30	10
CCATTCCTAATGTTCG	alt_5654_new	5	12	5	3	10	4	7	4	8	2
TTAGTGGTTTCCACAG	alt_5654_new	2	31	9	10	37	9	22	10	23	6
ATAGGCCCGACGACGC	alt_5654_new	0	0	0	0	0	0	0	0	0	0
CTGGTCCCAGCCTTGG	alt_5654_new	0	0	0	0	0	1	2	0	0	0
CATTTTTCCTCGCTGA	alt_5654_new	1	8	4	2	11	3	9	1	8	3
TGGCCTTTTGACGCAC	alt_5654_new	4	32	5	3	16	6	15	10	21	3
CAGTGTCTAATTCTGT	alt_5654_new	6	10	0	6	10	5	17	2	15	3
TAATGTAGTCCCAGAG	alt_5654_new	2	6	5	1	3	2	7	3	6	4
GGACCTAAGAAACGCA	alt_5654_new	0	0	0	0	0	0	0	0	0	0
GAAACGTGAGCACGTC	alt_5654_new	2	4	1	2	4	0	4	3	7	3
ATTCCCCTTCTAAATG	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TGTTCTCAGATCAGAT	alt_5654_new	0	2	4	1	1	1	1	1	4	0
CTGGATCTCTGTCCAC	alt_5654_new	22	59	41	21	74	24	85	27	76	30
ACGCAATATGTATGCC	alt_5654_new	13	66	12	21	53	18	44	14	70	23
CGATTTTTCACGCAAT	alt_5654_new	0	0	0	0	0	0	0	0	0	0
ATATCTGTTGCAAGCT	alt_5654_new	24	65	22	15	68	25	59	18	82	21
GAGTCACCTGCGCCGT	alt_5654_new	0	0	0	0	0	0	0	0	0	0
GTCGCATCTTCTATGG	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TTGGGTCGAGACAGGA	alt_5654_new	20	72	32	24	53	21	60	25	84	18
TTTACGGCATGTTGGC	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TCTCTGTTGAGGGTGG	alt_5654_new	38	49	19	16	69	30	52	22	64	31
GCCCGGAATTTCAACT	alt_5654_new	3	11	11	6	15	2	20	5	21	10
CGGAGACTTCGGCTCG	alt_5654_new	11	31	13	6	22	4	25	9	20	8
AGTAGTAGATTCGACG	alt_5654_new	0	0	0	0	0	0	0	0	0	0
GCCGGCGGCGTTAACC	alt_5654_new	0	0	0	0	0	0	0	0	0	0
CAGTTTATTACTTTAT	alt_5654_new	25	66	26	17	62	18	69	31	66	26
CAGGATTACGAACGTG	alt_5654_new	19	31	13	10	47	20	51	16	39	14
TGAAAGGCGTGCGATG	ref_5654_new	8	17	13	11	29	15	28	15	41	13
TCAACCTACTCCGAAA	ref_5654_new	6	21	8	6	20	2	25	4	30	8
ATCGTTTCATTGTAGT	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TCCTGGTATCTAAAGA	alt_5654_new	0	0	0	0	0	0	0	0	0	0
TATAGTCGTGCGTAAC	alt_5654_new	7	16	5	6	23	3	15	3	13	5
GTGTTTAGCCAATGGC	alt_5654_new	9	15	7	3	23	8	15	4	22	5
TCTGGAAACGAATCCT	ref_5775_new	93	68	100	95	50	86	79	50	67	78
TTTACATTTTGTATCT	ref_5775_new	10	11	11	11	10	8	6	17	16	14
AGTGTAACACTTTACG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CACTTAAAGCACGACT	ref_5775_new	111	100	140	110	85	116	116	115	75	93
ATGAGTAGGGGCGCTT	ref_5775_new	19	10	37	19	15	21	17	20	11	25
GTTCGTTCGGGTTGCC	ref_5775_new	53	40	61	50	45	58	50	52	48	46
TGCCTGGTTTAAAGGA	alt_5775_new	59	73	126	90	68	71	57	80	75	70
CTTGCAACGTGCTTTG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
TAACAATAGTTGTGTT	ref_5775_new	5	4	13	13	8	4	10	6	5	6
GAATGTCGGTGAAATT	ref_5775_new	0	0	0	0	0	0	0	0	0	0
AAAGACTACAGAGTCG	ref_5775_new	343	219	399	315	230	292	258	325	246	262
GAGTAATGGGACCTGC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
ATGCTTTACCTTCTGT	ref_5775_new	48	44	74	56	38	57	48	37	54	51
TTCGTCCTAAAGTCTC	ref_5775_new	10	3	8	11	4	8	10	9	9	5
ACTTGGTTTATCAGGT	ref_5775_new	29	24	42	35	23	31	30	27	26	33
ATTTCGACATTGGAAT	ref_5775_new	16	11	33	23	21	22	20	22	16	23
TAGAGGTTTTTATGGA	ref_5775_new	7	4	5	4	6	2	7	5	7	7
GGGCTGACCCGTTCGC	ref_5775_new	7	7	7	9	9	8	5	4	6	4
CTTGCTCTTGTGGTTG	ref_5775_new	9	21	19	11	14	13	20	26	16	8
TCTGTAGCTGTTAGTC	ref_5775_new	15	9	12	14	5	16	6	6	13	6
AGTCTCGCGGGGTACC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
TCTCTCCCCCCATTTG	ref_5775_new	19	16	21	28	6	14	7	24	21	15
TTGTTCGTAGCATCTC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
TCGATCCGATCAAACG	ref_5775_new	47	39	59	50	33	58	33	51	40	49
GTGGTTTTTCCAGTCA	ref_5775_new	16	12	25	11	12	14	9	18	8	12
TTGACATCCAGTGAAA	ref_5775_new	13	2	8	5	7	8	6	6	9	8
GGCGTTGGACTGGATT	ref_5775_new	131	79	175	146	84	124	77	108	94	96
GACACGCGGCAGGGAG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
GTCTGCGAACCTTCCA	ref_5775_new	39	20	48	38	23	45	27	24	24	30
GAATCTCTGACTACAG	ref_5775_new	82	67	113	100	66	69	56	84	67	75
AGAGATTAAGGATACT	ref_5775_new	74	65	106	95	39	66	61	81	63	61
GTGCTTTTTCGACAGC	ref_5775_new	19	19	30	33	14	20	18	26	29	25
CTTTATTGCCGTCTTC	ref_5775_new	68	46	79	73	40	62	51	73	42	69
ATTAGCATACCCCAGT	ref_5775_new	13	13	22	19	15	16	13	23	14	26
ACATTCATGGTAGAAG	ref_5775_new	11	15	26	21	25	7	16	14	24	15
ATCATCTAGCTTTATC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
TCGGCCATGTACCGCC	ref_5775_new	35	26	35	31	21	28	13	21	31	24
CGTGTTATCTCTCGAA	ref_5775_new	21	13	42	25	24	35	23	31	30	22
CAGCACATGGTACCCG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TATACCCTTAGGACAC	ref_5775_new	17	9	13	28	9	18	10	14	8	20
GCCGTCTAACGAGTCT	ref_5775_new	115	106	125	118	109	101	129	93	125	76
TAACCGATTGAAGTTA	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CAACGACCTGTATTTA	ref_5775_new	8	19	29	15	12	15	15	19	16	28
TGTTTTGAGCCTCCGA	ref_5775_new	23	22	18	21	10	17	18	20	15	11
GGTACGGCAGCGTGTG	alt_5775_new	325	206	397	350	203	301	207	309	207	291
ATTGCTGGTGTCACTC	ref_5775_new	0	1	1	1	0	2	2	0	1	0
TAGGGTCGTTTGTGAG	ref_5775_new	41	43	56	50	33	40	40	46	55	57
CAAAGTCTGCACATTC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
AGCTTCGGATCCTGGC	ref_5775_new	111	89	150	128	86	127	73	125	93	102
CGGTCGTGGCTCTTTC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
GGCCTCGGGCACCCTT	ref_5775_new	71	45	59	55	42	57	43	50	60	55
CGTGTTTGTGCGACGC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
ATCTAGACTTGTTAAC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CAGTACATCCGTTGCG	ref_5775_new	0	5	2	0	5	0	4	0	6	0
TAGATGAAGACTGTAT	ref_5775_new	35	34	60	45	48	53	48	42	43	31
GAGTGCCAGCTCGGGG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
AATTTATTGACCGGGG	ref_5775_new	7	8	11	20	8	9	7	13	9	7
ATCATTCAGCCCTACT	ref_5775_new	20	16	25	24	28	20	19	21	20	16
GATCAGTGCTCGCTCC	ref_5775_new	43	31	43	39	42	34	34	31	29	29
CATCCGTGGGCGGCAA	ref_5775_new	0	0	0	0	0	0	0	0	0	0
GAATTAGTGCCTTCTG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CTAAGTCCGTTGGTGT	ref_5775_new	24	14	38	31	31	22	22	27	24	26
TACGGTTAGTGCGTGT	ref_5775_new	35	33	52	36	36	35	38	59	27	38
GAGAGTCTTGTAATTT	ref_5775_new	83	45	101	69	39	74	58	63	53	66
ATACTGTCTTTGTTCC	ref_5775_new	7	7	9	6	4	4	11	10	4	8
TTTCCGTACTATATCT	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CGCCATCATGGCGTCA	ref_5775_new	36	65	45	31	63	55	64	35	60	33
CGATGAGCCACTATCA	alt_5775_new	29	24	39	37	30	35	32	40	35	35
TATCGTCTGGCACACC	ref_5775_new	124	76	156	112	80	130	86	121	102	129
CTGGGCTGTTGCTTTA	ref_5775_new	0	0	0	0	0	0	0	0	0	0
TTTTTCCCGTGTCTGT	ref_5775_new	2	1	2	5	2	2	0	2	1	0
GGTCGATTCCGGGGCA	ref_5775_new	51	36	42	38	38	34	39	35	36	30
AGGCTGACTACTAATA	ref_5775_new	0	0	0	0	0	0	0	0	0	0
GGAATGCATACAGAAC	ref_5775_new	66	41	57	65	57	50	62	39	60	43
CTCATTAGTTTTCCTG	ref_5775_new	80	42	66	81	57	69	49	61	47	54
AATTGCCGGGGCTTGC	ref_5775_new	13	6	23	11	11	21	12	12	7	15
CACTGCAGTGTCATTC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CTTCGATTGCCATCAG	ref_5775_new	53	85	103	83	99	76	87	84	128	77
TTTGATTTCAGCTGGT	ref_5775_new	33	34	53	40	30	41	22	34	30	34
ATGACCGCCAGCTTTT	ref_5775_new	32	23	40	40	20	42	14	41	22	27
TGAAGATGAGTGGCGA	ref_5775_new	34	21	40	40	21	40	37	29	28	29
GTTTCCAAGATAAGCT	ref_5775_new	62	44	69	73	60	70	51	63	37	45
TCTAATAACATATTTT	ref_5775_new	77	59	126	108	63	73	66	106	61	70
CATCAGACCTTTGGCA	ref_5775_new	24	21	18	17	13	26	7	12	14	17
GTTTCGCACGATCCTT	ref_5775_new	0	0	0	0	0	0	0	0	0	0
TTTTACAATGTGACTT	ref_5775_new	0	0	0	0	0	0	0	0	0	0
ATCTCGGTTTGGGGGC	ref_5775_new	2	2	2	1	4	3	3	1	1	1
TGGCGATTTATCTTTA	ref_5775_new	141	94	177	144	69	147	109	109	88	122
TATAACTGATCTTGTT	ref_5775_new	32	21	33	26	26	25	21	25	28	35
GAAAATAGCTACCTTA	ref_5775_new	21	14	18	14	14	8	12	19	15	19
GAATGTCATAACAGGG	ref_5775_new	28	32	55	41	27	41	40	34	33	51
GGAACGGTTGACCCGT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TGAATACGCATGTAGC	ref_5775_new	9	6	4	5	5	8	8	7	6	5
GGATTGTGAGGGTGCG	ref_5775_new	15	5	11	7	10	17	15	9	10	11
CGACACTCGGTCATGG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CCACTTCTCCCTTTTC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTAGTCAATTC	ref_5775_new	22	14	27	22	18	18	15	15	12	16
CAGAATGAAGGGGAGC	alt_5775_new	35	22	50	38	32	31	25	31	38	41
TTTTGATATGTACGCG	ref_5775_new	34	14	32	34	33	26	19	23	27	20
TGGACCAGGTTCGCTG	ref_5775_new	93	70	108	88	112	65	94	99	97	80
TTCACGTTTCGGTTGC	ref_5775_new	0	0	0	0	0	1	0	0	0	0
GCATGTCTCAATCTTA	ref_5775_new	7	11	13	20	15	13	29	8	6	14
ACAACATGTTTTGTCA	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CTTCTTCATGGGGGCT	ref_5775_new	114	98	135	133	98	123	117	133	126	112
AACTAGATCGTGATGC	ref_5775_new	5	6	7	5	1	6	4	0	2	2
AATAATTATCTGCACT	ref_5775_new	129	82	155	139	105	123	100	123	119	116
TTTGACTTTCAGGTTT	ref_5775_new	22	17	31	23	20	26	12	19	13	19
CACAGTGTTCTAGATG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
GGAAAACCCTGGGGCA	ref_5775_new	0	0	0	0	0	0	0	0	0	0
GGTCTCCCACCCCAAC	ref_5775_new	55	56	56	47	55	47	52	41	48	40
CCCTACTCACATAAGG	ref_5775_new	12	26	32	31	23	14	22	24	18	15
TGGTTACAATAATGCA	ref_5775_new	67	55	88	88	45	78	72	88	61	69
CTACCGTTCCCTGAAA	ref_5775_new	3	5	8	9	14	6	11	6	6	9
GTTCTACTATTCCTGG	ref_5775_new	10	11	11	12	6	14	4	12	3	10
TTGTTATTTGCGCCGG	ref_5775_new	20	7	15	16	5	12	10	7	14	6
CCCAAATTAGTCCTTT	ref_5775_new	30	18	37	29	27	20	31	20	24	22
TAGCCTATAACTCAAA	ref_5775_new	13	10	14	19	8	6	11	14	12	5
ATTTCGGGAATAAGGG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CTTTGCCATTAGACCG	ref_5775_new	21	12	24	18	19	13	31	15	25	9
TGTCTTGTACTTGGTA	ref_5775_new	32	14	36	23	23	24	27	31	30	25
AGGTACGGATCTATGT	ref_5775_new	0	0	0	0	0	0	0	0	0	0
ACCCTAGGATACGGAC	ref_5775_new	20	5	18	13	11	12	5	8	12	7
TGGAAGGCACGTTTGT	ref_5775_new	4	4	14	6	4	6	9	3	2	1
CACATAGATCGTCATA	ref_5775_new	5	3	16	6	9	2	7	6	4	5
TTAACCGGTGTAATTT	ref_5775_new	97	74	121	123	97	105	101	92	87	96
CTTCTATGCTCAAGGG	ref_5775_new	0	0	0	0	0	0	0	0	0	0
ATGTCGATTGCCTGTA	alt_5775_new	40	12	53	41	35	33	33	35	27	27
GTATTTTAGGTGCCCC	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CGTCCTCGTTGTTTTT	ref_5775_new	34	12	26	29	25	18	18	29	20	16
CTCAATGCAATTCGCG	alt_5775_new	170	169	241	212	180	165	193	183	189	148
TTCAGTGTTACGTGGG	ref_5775_new	97	87	128	109	100	103	89	94	91	83
AGTCCGATGCTTGGCA	ref_5775_new	45	16	48	35	41	42	35	29	36	42
CTTTGGCTTAGCGGCA	ref_5775_new	5	13	11	9	8	4	9	7	9	8
CTATTCTGGAGCCATG	ref_5775_new	45	45	50	44	34	41	37	26	31	27
GGCTCCCCTGCCCACA	ref_5775_new	12	11	19	13	10	16	9	9	10	11
CGCGTTGTCGCCGTGA	ref_5775_new	0	0	0	0	0	0	0	0	0	0
CGTCTATCAGCTCGTA	ref_5775_new	40	31	50	62	35	44	45	43	29	42
TACGCAGGTTAAGCTT	ref_1218_fdr	106	28	103	58	27	89	31	77	50	84
GCACGTTATTCGCACA	ref_1218_fdr	30	12	33	37	9	46	18	24	17	30
TGCGTTACTCCGCGTC	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTACCTTTAAGAG	ref_1218_fdr	20	29	33	18	40	20	48	29	34	25
GATGGACATTTGCCCT	ref_1218_fdr	94	39	80	57	31	67	46	61	49	75
TAATCCCCACTGAATA	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAAATTTCTGATA	ref_1218_fdr	128	59	143	86	60	134	66	120	50	141
AGTGGTCTTGTTCAAG	alt_1218_fdr	109	38	128	95	44	121	49	103	59	97
CTCTTTAATTCGTATC	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCACCGGGTTTTT	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGGCGTTTAGATA	ref_1218_fdr	32	10	25	14	16	16	2	10	9	17
TCTCATGTGTAGATAC	ref_1218_fdr	139	48	121	78	56	101	50	108	48	105
TTCAGATTTCTCTGTA	ref_1218_fdr	285	106	314	208	116	266	94	228	119	247
GCCTCTTGGGCTTGGT	ref_1218_fdr	316	116	337	223	112	257	128	205	119	256
GCATATCATGTTTAAA	ref_1218_fdr	227	203	272	193	208	190	183	179	177	181
ATTTGGACATCCTAAA	ref_1218_fdr	17	9	26	16	15	8	21	9	18	11
CACCGACCCACCGTGG	alt_1218_fdr	26	59	39	33	66	20	57	31	67	29
CGCTTCCTGGTTTTAG	ref_1218_fdr	81	20	84	42	32	57	30	52	44	57
AGATCCCGTCCACAAA	ref_1218_fdr	180	90	222	157	56	155	73	146	107	145
CGACCCCGCTTCCTGG	ref_1218_fdr	650	220	638	457	243	549	255	522	241	536
ACGCCGCGTTAATGAC	ref_1218_fdr	129	73	152	97	51	111	59	105	69	118
TTCGTATATAAAGCAC	ref_1218_fdr	304	122	373	225	131	259	139	256	121	323
GAAGCTGTGCATTCAG	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGGTCGCACTGGC	alt_1218_fdr	23	27	33	10	48	15	44	35	45	24
ATCCGTTATCTTTCGA	ref_1218_fdr	231	128	279	168	108	246	91	164	87	209
AGCCATCGCCATTGTT	ref_1218_fdr	532	228	643	450	261	500	269	480	265	485
CGCATCATACACTTCG	ref_1218_fdr	560	217	450	349	245	376	253	379	273	410
CTTATCCACGACAAGC	ref_1218_fdr	13	3	14	10	9	11	3	13	7	13
TACGAATGTTCTAATT	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTACATTAGGTAT	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTCCATGTTCTCC	ref_1218_fdr	130	49	125	97	57	98	47	108	51	101
AACTTCGACGCCTGGG	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
CGCGATATTATGAATC	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGACCGGACTTCT	ref_1218_fdr	78	51	100	53	31	71	37	65	47	73
CGCCCCCGCTTCCTGG	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGTCCAGCCTGGA	ref_1218_fdr	14	6	13	9	3	15	5	9	5	7
CCGGAGGAATGTAGGT	ref_1218_fdr	107	52	122	91	44	80	59	103	47	105
CCGGCAGGGTCGGCTC	ref_1218_fdr	76	17	42	42	18	42	30	45	21	52
AATTCGTGAGGCTCCT	ref_1218_fdr	163	83	215	117	74	155	87	145	85	172
ACTATATTACTGCCAG	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
CAATCTCCCTCTTTCC	ref_1218_fdr	56	85	87	57	74	80	102	69	95	69
CTTATGTCAGATGTCT	ref_1218_fdr	28	12	38	33	20	37	19	40	23	39
GCGCAGAGAAGGACAG	ref_1218_fdr	34	3	24	20	8	16	10	17	11	17
CATTTTCAATCCGTTA	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
GTACTCAGGGTGCAGC	ref_1218_fdr	239	91	299	211	103	227	92	202	81	253
GTGCCGACCTGGGATT	ref_1218_fdr	0	0	0	0	0	0	0	0	0	0
TTATTGCGACCTTCGT	ref_1218_fdr	34	9	41	34	21	31	17	29	16	30
AAAAGTACACCTGGGG	ref_1218_fdr	9	7	9	13	22	8	13	3	19	6
GTCATCGTGTGCTTGT	ref_1218_fdr	81	25	78	55	26	69	29	57	33	79
CGTTAGGGCTTCCGTT	ref_1218_fdr	109	37	117	58	49	73	44	94	40	72
AGGTGTTGCATTGTGG	ref_1218_fdr	208	58	201	141	69	173	97	162	66	194
CATTCGGGCCATAGCT	ref_1218_fdr	70	36	67	52	39	65	28	65	25	64
CGTATTTAACGGCCGT	ref_1218_fdr	61	16	52	47	30	43	18	46	28	42
GTTAGCGCCGAGTTCC	ref_1218_fdr	88	30	88	61	38	73	44	91	36	80
CAAATTACCGTAGCAT	ref_1218_fdr	43	26	65	32	19	48	26	33	28	56
TGGATCGTCCTAGTAC	ref_1218_fdr	57	63	62	44	62	39	63	56	63	56
GTGTAGAGACCTCTGC	ref_1218_fdr	0	1	2	0	2	2	0	1	0	4
TTATTAACGTCCCGCA	ref_1218_fdr	103	42	136	89	40	108	42	82	47	96
CCCTCGAGGCTCACTT	ref_1218_fdr	533	303	566	330	303	400	326	459	354	415
CCTAGACTCTCCTCCA	ref_1218_fdr	14	9	18	8	27	10	16	17	21	14
AGTCTCTATTTGTTTT	ref_2028_fdr	49	17	73	57	10	58	11	40	12	56
CCGCGCTAGTCGACCT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GTATGGCACATGGATT	ref_2028_fdr	164	68	213	192	82	185	82	178	69	171
TGGTGCATGTTTGATA	ref_2028_fdr	482	202	554	481	184	442	207	435	223	384
TGAATAGCTTTTGCTG	ref_2028_fdr	313	121	358	327	115	292	127	274	127	264
GCACTATGTACGCCGA	ref_2028_fdr	88	24	111	79	33	87	25	89	20	64
AGCTGTGAATTCTGCA	ref_2028_fdr	4	0	4	1	0	6	3	4	1	4
CCGTGACTGCCAGCGA	ref_2028_fdr	102	16	131	114	27	100	30	88	33	101
CCTGTTTAGCGCCATA	ref_2028_fdr	201	82	239	275	47	217	72	207	68	207
TTTAATATTTGATCTC	ref_2028_fdr	41	10	48	42	13	30	12	32	14	37
ATATCATGTTCTAGAA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTATCATTAGTT	ref_2028_fdr	289	84	394	370	93	286	112	307	107	305
GGGAGTGAGCCCCTAA	ref_2028_fdr	30	12	28	24	6	22	8	40	10	31
CTCAATGGCACCTATA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTGTACGTTGCCCGCA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCACTGCGCTGT	ref_2028_fdr	31	9	19	23	10	27	11	23	13	32
ACGCCCGATAGAGTAC	ref_2028_fdr	26	8	31	15	2	8	6	28	17	23
GTGTTGGTCAAAAACT	ref_2028_fdr	310	111	397	352	112	299	126	241	111	285
ATTTCTTGAGGTTACT	ref_2028_fdr	154	38	203	207	53	147	55	141	49	139
CAAAATTGTTTTTACC	ref_2028_fdr	1	1	1	2	0	1	1	2	0	0
CCGTCGGGGCCTCTAT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TATGCGCACGGAACCT	ref_2028_fdr	568	228	718	585	196	611	217	601	228	569
ACTAAATCGTTACCGG	ref_2028_fdr	36	12	40	40	16	38	10	27	16	28
ACATCCTTTATCCCGG	ref_2028_fdr	43	31	59	48	32	39	29	42	35	40
GAATCACATCTGTCAA	ref_2028_fdr	135	44	162	138	45	105	47	124	34	98
ACCATGCCAGAATATT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACAGGAATTTCA	ref_2028_fdr	251	87	304	302	87	282	112	292	111	275
TGTTTTTAAGGGATTC	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTCAACAAGTTCT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
AATTGTAAGATTTACA	ref_2028_fdr	20	5	12	16	5	16	9	20	15	22
TCACTGTGGCCTTTCA	ref_2028_fdr	80	38	113	114	46	80	28	77	37	99
TCCGAGCGGGCCCCTT	ref_2028_fdr	8	1	14	16	1	10	5	6	3	10
CCACTTTTAAATCTCT	ref_2028_fdr	166	60	176	129	59	164	66	122	71	151
CCGAGTCTACATGAAC	ref_2028_fdr	36	25	33	26	20	19	27	23	28	34
GATAATTCATGGCGTT	ref_2028_fdr	83	29	95	86	24	84	27	93	42	97
ACAGGATCGGCTAAGC	ref_2028_fdr	32	19	40	18	14	22	12	26	11	24
ATCGGCCGGTGATTTC	ref_2028_fdr	55	13	92	71	29	53	22	83	24	47
AGGCCTTTGTTGCCCG	ref_2028_fdr	141	33	178	159	31	116	41	112	35	111
TCTGAGCCCTTTCCTT	ref_2028_fdr	103	37	116	112	37	76	38	87	47	84
GTGCCTCTGGGGCACA	ref_2028_fdr	86	35	98	67	14	72	25	73	35	78
ACTAGGGCGTGACTTT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TGGCACGGAGATCCTC	ref_2028_fdr	114	31	152	125	34	123	46	73	44	94
CCAGTGCATAAGACGC	ref_2028_fdr	202	71	260	234	82	167	78	212	78	208
AGATCCTTAATTGCCT	ref_2028_fdr	111	37	112	92	59	98	47	112	63	112
AGTGTCGGAGGATTGT	ref_2028_fdr	76	27	91	63	12	43	30	44	20	54
TTCTTCCTTATCTGAG	alt_2028_fdr	59	24	54	42	25	44	17	49	9	48
GTAGCTTTTTATCATC	ref_2028_fdr	89	34	122	127	47	92	39	101	30	101
ATGTGTCAGATCCTAT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTAAATACTTCAG	ref_2028_fdr	117	28	148	81	39	93	45	83	33	93
TCTGCTGGATTGACAA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCAACTCGATGAACCG	ref_2028_fdr	99	29	97	119	31	77	49	97	31	92
TACATCCATGGCGCGT	ref_2028_fdr	13	7	40	22	5	24	10	19	5	25
ATAACAAATATATAAC	ref_2028_fdr	86	33	125	103	32	90	31	93	35	81
TCTAGTAGTGGGCTAT	ref_2028_fdr	25	33	28	31	20	32	25	29	21	27
CCGTCCGCACAAATTC	ref_2028_fdr	268	92	291	224	78	243	84	205	77	210
TGGGTGCTATCTTGCT	ref_2028_fdr	48	10	47	28	9	27	9	33	17	20
GAGAGTGATTTGCACA	ref_2028_fdr	276	129	344	289	99	282	134	255	122	225
TTATCAGACGTTGGAA	ref_2028_fdr	135	39	169	137	44	152	37	144	38	126
CAGTTACAACCAGAGG	ref_2028_fdr	58	20	75	66	28	56	19	57	32	58
AACTGGAGTACCTGCC	ref_2028_fdr	170	77	213	161	81	168	71	150	70	146
TAACTCTCCCCTATTC	ref_2028_fdr	23	44	21	14	50	13	50	17	42	17
TGACTGCATATGGACC	ref_2028_fdr	43	14	70	53	18	38	16	40	21	41
AATTCGGCTTATGCAG	ref_2028_fdr	10	6	3	3	3	4	2	4	8	6
CTGGTTCCGGCTCCTT	ref_2028_fdr	342	95	434	402	138	386	124	335	117	313
TAGTGATGCCGCACCC	ref_2028_fdr	14	14	6	15	4	8	11	14	9	12
TATTGTGTGTGACTTT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGAAATGATTTGT	ref_2028_fdr	29	12	33	33	12	33	8	50	8	41
TTTTGTTCTCTCAGTG	ref_2028_fdr	143	50	152	142	49	109	45	118	46	116
AGGAATCTGTGCTCGC	ref_2028_fdr	229	86	354	257	99	246	90	249	89	203
TTCGGAACTCGCGTGT	ref_2028_fdr	13	3	15	18	4	16	5	12	3	11
TAGATATTTCCATCCC	ref_2028_fdr	45	11	51	30	7	35	19	24	14	34
CAGCATATCCTCGAGG	ref_2028_fdr	243	105	321	248	95	205	120	204	104	227
TACCGCCCGACTCCGT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCAAAGCTTATTTGAA	ref_2028_fdr	28	7	25	26	11	27	10	25	4	19
CATCGCCCTGGCTCTC	ref_2028_fdr	271	89	266	262	74	229	72	224	82	222
TCGTCGGGACTAAGTG	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CACACGGGGTGGTTGC	ref_2028_fdr	33	22	69	64	13	43	15	56	14	68
TTGCAGTGCATTTAAT	ref_2028_fdr	51	21	76	60	20	40	18	40	24	38
TGCCGCTCTATCGCCT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGATTAAAGATGT	ref_2028_fdr	38	12	58	56	15	47	13	33	11	43
ATATCATGGTTAGCGC	ref_2028_fdr	65	23	80	105	24	81	30	84	41	61
TCTTAATGGTGTCTGT	ref_2028_fdr	53	15	61	50	20	59	18	47	19	44
CATTTCGTCTATATTA	ref_2028_fdr	94	25	106	79	27	89	26	93	26	59
TTCTGGCCCGTGTAAT	ref_2028_fdr	29	41	66	60	44	45	29	55	45	33
TCTCCTAAAGCATTAG	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
ATCCGGAATATGCCTG	ref_2028_fdr	18	5	16	19	8	11	7	11	6	10
TGTCTGAGCCGATATT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGGCACTCATGA	ref_2028_fdr	74	30	106	71	29	78	40	83	33	72
TTTCCGTTACGAGGAC	ref_2028_fdr	71	28	134	105	32	97	30	85	34	81
GCTGCCTTATAGTTGC	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CATGGCTCTACGCTTC	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGTCGGGTAGAT	ref_2028_fdr	20	8	30	35	8	28	9	25	9	21
CTGCTGTTGTTATCTA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTGACCTCCTCTGCCA	ref_2028_fdr	67	24	61	60	26	57	25	64	40	60
GTGTAGAACAGGTCGG	ref_2028_fdr	25	11	44	42	7	34	17	45	21	33
CATCTGCGCTGCGCTA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGACCTTAATTTG	ref_2028_fdr	31	13	40	28	16	37	8	18	10	24
GCACCAGTCTTTCAAT	ref_2028_fdr	53	9	62	52	19	46	23	56	24	53
TCACTAAGACGCGAAA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTTGTTATTGTC	ref_2028_fdr	242	88	296	241	90	256	99	273	102	204
CTGGTGCCGCGGAGTG	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGTTGGATTGATT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TAAAACGGTGTCTGAA	ref_2028_fdr	318	104	379	337	90	325	89	324	95	264
CTCTCAGTCTATTACA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TATATTGACTAGGAAG	ref_2028_fdr	63	54	84	80	52	66	42	59	51	62
ATGCTATCATTGCATA	ref_2028_fdr	55	10	31	37	18	33	13	36	23	34
GGCCAATCGCCGGCGT	ref_2028_fdr	112	29	127	98	36	105	44	109	49	77
TGGATGCCAAATGGAG	ref_2028_fdr	28	14	52	35	5	36	11	26	15	18
GAATTTCTCCGTTTTG	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTATGACGCCCGT	ref_2028_fdr	49	17	52	37	21	54	10	36	19	45
TAGGAACATGATGCTC	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GCGGGAGCGGGCCAGT	ref_2028_fdr	44	16	54	64	25	49	20	60	20	43
CTCGACTTTTCTAAGC	ref_2028_fdr	16	11	35	34	8	21	10	32	6	24
TCACCGACTTCGCTCT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GAATGTTAGATCACTG	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CACGAACTGCGGCGTG	ref_2028_fdr	249	74	307	265	84	225	81	205	82	212
ACTTAAGTTCGGCCGT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTGAGGAATGTTT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GATTCATTGACGGCAT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTGTTTTGGCATG	ref_2028_fdr	130	41	164	145	63	150	55	117	62	116
TGTTCGTGCAGAATAG	ref_2028_fdr	16	4	27	24	4	27	6	17	10	27
TTAAATAACTTTTCAT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCAAAAGCCATTT	ref_2028_fdr	294	85	323	303	113	264	123	258	106	262
GAAGTCTGTGATCGTT	ref_2028_fdr	125	39	163	135	39	104	55	97	49	75
CATCTGCGCTGCGCTT	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
CGTGCACTTGGCCTTA	ref_2028_fdr	45	9	43	32	5	43	20	34	17	42
TAATCATTTCGGTTGA	ref_2028_fdr	0	0	0	0	0	0	0	0	0	0
AGATAACTTTGTGGAT	alt_6114_new	67	69	77	59	89	50	83	63	113	37
CCGTGGGTTTATGTTT	alt_6114_new	18	35	26	13	32	20	34	21	29	12
TCATGGCTTTGATTGT	alt_6114_new	19	21	24	20	25	25	38	15	43	27
TTCTGAGTACTTGTGT	alt_6114_new	1	9	8	2	6	6	6	6	12	4
TGCCAAATAATTTCTC	alt_6114_new	0	0	0	0	0	0	0	0	0	0
CATTACTGATCGCTGA	alt_6114_new	40	47	39	43	70	27	50	30	50	24
AGGGAATGCCCAGGCA	alt_6114_new	0	0	0	0	0	0	0	0	0	0
TTCTCACAATTAACCG	alt_6114_new	41	52	38	47	45	29	57	37	52	45
AATCGTCCACTTGAGC	alt_6114_new	48	78	71	52	76	53	74	44	95	32
TACTTTTTTTCAGTGC	alt_6114_new	0	0	0	0	0	0	0	0	0	0
GAGATATCCGCAATTT	alt_6114_new	13	15	18	8	18	7	15	7	31	10
CGCTCATATATTTAAC	alt_6114_new	4	2	0	4	8	1	4	1	3	1
TAGCGTAATGCTCAGC	alt_6114_new	56	70	57	51	87	42	71	44	96	42
TCGTGGCGCGCAGATC	alt_6114_new	0	0	0	0	0	0	0	0	0	0
TACTCATGATTATTTT	alt_6114_new	0	0	0	0	0	0	0	0	0	0
CTTAATCAATGAACAG	alt_6114_new	33	52	30	21	44	18	44	23	46	12
GTAGCGTGTAGCTATA	alt_6114_new	103	212	113	103	158	96	183	68	192	96
GAATTTTACCATCTTG	alt_6114_new	85	142	82	73	126	79	134	68	156	69
GCGGGGATACTGCCAT	alt_6114_new	0	0	0	0	0	0	0	0	0	0
CTTTATCACCTCTTAG	alt_6114_new	42	87	43	61	81	54	78	44	87	37
CACTTCCTACGGCGGG	alt_6114_new	0	0	0	0	0	0	0	0	0	0
AACCTATTGCGGTTAC	alt_6114_new	0	0	0	0	0	0	0	0	0	0
TGGCTCGCGTCTTGAT	alt_6114_new	22	43	29	23	37	15	26	26	31	21
AGACATTTGACGGACT	alt_6114_new	141	172	122	132	182	105	174	116	194	84
CACATCATTGCGCCTT	alt_6114_new	26	68	41	24	62	19	69	27	89	15
GCGGTAAAGATTTGAC	alt_6114_new	0	0	0	0	0	0	0	0	0	0
TCTGTTACACTTAAGT	alt_6114_new	3	6	5	4	9	3	11	1	15	8
TTTCTCGTACGATATG	alt_6114_new	44	47	24	36	66	21	48	31	65	32
TCTTTATAGCCCTTGG	alt_6114_new	5	9	2	5	13	11	10	1	7	4
GTACTTTTGTGTCACT	alt_6114_new	27	34	31	28	54	22	59	21	53	16
ATGATTTTTGGAAGTA	alt_6114_new	28	47	28	25	44	26	29	26	47	24
CTGTACACCAGTATAG	alt_6114_new	18	50	34	34	56	32	61	28	63	23
CATTCGACCCGCTTCC	alt_6114_new	0	0	0	0	0	0	0	0	0	0
ATTGTATATGGTGGCT	alt_6114_new	53	92	75	45	78	50	91	66	102	47
GAGGTTGAGCTGAATG	alt_6114_new	0	0	0	0	0	0	0	0	0	0
GATCCTAGATTAGGGT	alt_6114_new	2	10	7	4	5	2	11	3	7	4
GTTGTAGGATCATCGG	alt_6114_new	0	0	0	0	0	0	0	0	0	0
ACTGTCACGGTAAGTT	alt_6114_new	1	9	3	8	8	3	3	6	9	4
CACGGCGCGGGCTAAT	ref_6114_new	60	94	70	67	102	56	94	54	103	52
TGCTTGCCCGTAAGTA	alt_6114_new	34	34	35	20	37	32	52	30	48	29
ACCGACATTTCGACGT	alt_6114_new	52	52	56	55	69	34	62	37	69	42
ACGAGAATGACCGGAA	alt_6114_new	15	21	12	20	18	8	39	17	26	13
ACTAACTACTTAAACC	alt_6114_new	8	22	14	10	23	7	37	19	19	9
GCTTGCAGTACTGGTT	alt_6114_new	9	8	14	7	14	4	14	6	6	3
GTCCTGTCACCGATTC	alt_6114_new	0	0	0	0	0	0	0	0	0	0
ATATCTAGTTTGATAT	alt_6114_new	6	16	8	15	10	7	17	6	15	6
CTGCGGCACCCACCTC	alt_6114_new	21	51	31	36	47	27	62	28	44	31
TTTGTTACTTTCTCAT	alt_6114_new	79	124	98	81	128	105	134	87	135	80
TCTAGCAAGGGCTAAC	alt_6114_new	22	45	30	17	29	26	23	12	28	14
GGTGCGTTTACGACCT	alt_6114_new	34	75	51	29	64	35	80	37	91	40
TGACGCCGTTGCAGCT	alt_6114_new	53	52	65	36	56	38	67	40	69	38
GTGTGTTGGCTACATC	alt_6114_new	19	40	29	19	29	33	45	24	43	19
TTCTCTGCATGCAATG	alt_6114_new	11	23	18	10	27	12	17	8	31	19
TGCAGCGCGAGCGGTT	alt_6114_new	44	67	51	29	69	37	68	34	72	30
TGCTACCATACATTAG	alt_6114_new	61	131	117	91	159	79	158	86	155	64
CTTGAAGGCTCCTTAG	alt_6114_new	0	0	0	0	0	0	0	0	0	0
AGCTATAGCCATTGGC	alt_6114_new	4	5	10	6	10	4	5	1	7	4
ACAATCGTGGAGTTGC	alt_6114_new	69	134	74	73	102	73	109	72	132	68
GTTGTAGTTATTAGGG	alt_6114_new	0	0	0	0	0	0	0	0	0	0
ATTCCTGCACAGTGTT	alt_6114_new	11	32	19	13	33	12	35	10	23	20
CTGTGTGAATCCTAGA	alt_6114_new	26	38	39	24	49	23	37	18	48	40
ACGCCGGTATTGTTAT	alt_6114_new	31	70	41	45	64	46	70	34	59	32
GAGCACTATCGTCACC	alt_6114_new	14	32	19	19	29	11	30	22	24	15
CGTTCGGTCGTATAGC	alt_6114_new	8	14	14	8	13	11	23	17	9	8
GTTCCCGTACAACATA	alt_6114_new	28	51	38	19	56	35	50	33	59	27
ACCCCAATTCTTCTTG	alt_6114_new	21	41	28	31	45	23	62	26	41	26
AGCTTCCTCTAGTCAA	alt_6114_new	12	14	8	5	5	7	6	2	14	3
GAGTAGGAACATTCTA	ref_6114_new	72	108	88	74	94	73	106	77	127	78
AGACCAGGTGGGCTTA	alt_6114_new	0	5	2	3	4	1	7	2	7	2
GCTTGCCCTGCTCTAT	alt_6114_new	88	172	127	100	179	97	194	89	192	97
ACCCTGCGCACCTTGA	alt_6114_new	49	72	55	32	68	40	71	46	71	60
CATTCACACGGGCACA	alt_6114_new	0	0	0	0	0	0	0	0	0	0
ATTACTTGTTATTTCC	alt_6114_new	26	41	24	33	34	35	50	22	53	31
TCCTGTCTCTATATTG	alt_6114_new	0	0	0	0	0	0	0	0	0	0
TTTATTACCTCTGCCG	alt_6114_new	20	35	23	25	36	14	35	17	47	18
GGGACTCTTTGCAGCG	alt_6114_new	0	0	0	0	0	0	0	0	0	0
TAGTATTGGCTAACTT	alt_6114_new	33	39	35	31	49	34	55	24	50	19
CGTACGGATTCATTAA	alt_6114_new	0	0	0	0	0	0	0	0	0	0
TGTGTGCTTCGGTAGG	alt_6114_new	12	10	11	13	18	6	12	4	16	4
AAACGACATAGGGCCT	ref_4201_RC	60	90	85	58	101	58	100	51	96	62
TGCCTGACAGAACGCG	alt_4201_RC	25	19	11	19	32	13	27	20	32	10
GTCTAGCCTATTAGTC	alt_4201_RC	18	36	25	25	31	23	43	26	46	21
AGAGGTTAGGCATGCC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
AAGTTTCTTTCGTTTG	alt_4201_RC	38	54	52	32	62	43	62	32	64	32
TCAGTGGACGCACATC	alt_4201_RC	6	19	21	10	17	11	15	12	19	10
GGATTCTTACTCTGCT	alt_4201_RC	19	13	12	11	18	14	22	16	29	13
CGACTTCATCAGCAGT	alt_4201_RC	7	9	15	9	13	9	8	13	15	5
CATGTTTATAAGCGCT	alt_4201_RC	14	42	23	16	29	20	28	19	31	20
CCACCAGACTGACTTG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
TCATTCGCATAACCTA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CATTTATTCGAGTACT	alt_4201_RC	3	12	3	2	4	2	9	2	1	1
ACACGCCTATCGTAGG	alt_4201_RC	15	37	27	18	39	19	42	16	38	17
CACTGAACGCCATTAT	alt_4201_RC	20	32	24	26	27	17	27	21	21	16
CAGGATCAGCATTTTA	alt_4201_RC	25	34	22	15	30	20	28	11	29	15
TTCCTGATCCCGGTTG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GGCGAGGTGGTCACGG	alt_4201_RC	47	59	65	37	70	48	53	33	69	46
TATCAGGCTACCCTTG	alt_4201_RC	8	2	1	1	6	1	3	4	4	2
CTGGCCTCGAGGTGCA	alt_4201_RC	9	10	9	11	14	7	13	7	16	8
TAATTCGGTCATCTGC	ref_4201_RC	24	37	35	30	39	17	48	30	36	25
CCATTACAACCAGAAA	alt_4201_RC	28	19	22	38	32	32	42	25	26	22
CATGCAGGAATCGTAT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTAGGTGAATGTTTAA	alt_4201_RC	23	48	52	32	48	36	56	17	71	28
TTTGCCCCGCTGATTT	alt_4201_RC	31	46	37	27	51	36	47	28	56	27
GAGCTCATTAGGTATA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGTTAAATAGTT	alt_4201_RC	11	12	28	9	8	16	14	17	8	17
TTGGTTCTACCAAGGA	alt_4201_RC	4	8	6	4	9	8	15	6	11	12
CCCTCTTGTTTTGCGC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
TGGTTCGGATCTAGGC	alt_4201_RC	5	5	2	6	8	5	7	5	10	0
GCCGTGCTAGTGGTAC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GGTGCGGCGGATCATT	alt_4201_RC	0	0	2	0	2	1	0	0	1	0
TGATCCATCCTTAAAT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTGTCGTACTGGCACT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
TGATTACCAATTTTCA	alt_4201_RC	1	4	4	1	3	6	4	6	2	5
AATTTTTTGTGTAATC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
ATTACGTCTTCTTGCG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
ATCTACCACACTTCGA	alt_4201_RC	6	3	2	2	12	7	3	5	13	5
GTACGTCGAATTATCT	alt_4201_RC	2	6	10	7	6	3	5	3	7	2
ACCTTTATCGATTGTA	alt_4201_RC	15	33	19	28	21	18	29	17	29	12
ACACCGATGGGCATTG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
AGGCCTGGGCAGTTAT	alt_4201_RC	11	7	17	6	8	6	14	5	14	3
CCGAGTTGGATCTGAA	alt_4201_RC	0	4	0	0	2	1	0	0	0	1
CGAGTGGGTAAACGAT	alt_4201_RC	116	165	133	115	190	142	185	118	203	105
TTTCAAGATTGTCGCT	alt_4201_RC	67	93	79	60	117	84	108	67	119	54
CCAGTCCTGGCTAGTG	alt_4201_RC	19	50	42	20	57	26	43	27	49	14
CGCGAAGTATGGTAAT	alt_4201_RC	56	68	51	58	59	42	68	32	68	44
ACTCAAATCTGCAGCC	alt_4201_RC	10	5	6	1	9	1	10	1	7	3
GCGGTCTGATGAGAGA	alt_4201_RC	20	33	28	24	27	21	38	23	36	21
ATGCCTGAAGGTGACG	alt_4201_RC	14	27	11	22	21	11	22	11	24	13
TGGCACCATCTGATAA	alt_4201_RC	41	44	41	50	63	39	61	52	52	35
GCCTTCTAGGGCAGCG	alt_4201_RC	22	47	13	18	36	26	23	15	42	14
TCGCTCTTTTCCAGTT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTCGGAGCGTACTTGA	alt_4201_RC	20	37	25	16	38	15	36	10	48	16
GTTTATAACGTTCCGC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
ATGAAACAATCGCGAA	alt_4201_RC	13	17	14	19	21	22	31	14	20	18
GCCGTCGTCAATCCAC	alt_4201_RC	4	8	3	2	7	5	9	4	9	3
GCACGGGATGCACTCC	alt_4201_RC	6	21	5	3	26	4	38	2	33	5
ACTCGCTGGGCCCGCT	alt_4201_RC	32	51	48	39	43	36	51	30	38	33
CACCTTGGCATGCCAA	alt_4201_RC	1	10	5	2	5	3	10	5	5	2
CGAGCGTCACCTTTCG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CCCTCAGCCCATGTCT	alt_4201_RC	0	12	1	4	3	6	6	2	1	3
ACTCGGTGCCTTCTGA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCTGACGACCCC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTATTCGTTGGCCTCG	alt_4201_RC	6	8	4	3	10	6	3	3	6	5
ATACAGTGACCGCTGC	alt_4201_RC	24	37	25	15	30	13	39	26	36	19
ATCCAGGCCAGTGAGC	alt_4201_RC	15	40	20	24	41	24	49	16	35	27
GAATTTCCTTATTGAG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GGGCGTAAGACTGGCG	alt_4201_RC	4	16	8	3	7	9	8	8	6	7
GTATATCTCGAGACAC	alt_4201_RC	16	10	7	17	22	11	26	8	16	14
TTCCATCAGATATCCC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
TGCAAACTATGAGGGT	alt_4201_RC	13	19	7	9	17	10	10	5	13	9
TGCACGTAAGCGTCAG	alt_4201_RC	109	169	85	93	137	99	161	78	171	62
ACGGCATCCTGTCTAT	alt_4201_RC	9	14	5	7	7	7	8	6	16	11
TGTTTGGGGGTCCCCC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GCTCCTTCTTTGTCCC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CGATTCACAAATTTCG	alt_4201_RC	12	12	7	19	8	8	13	7	20	8
GGATATCAGAGGTTCG	alt_4201_RC	95	215	147	111	178	108	210	116	217	133
TTCTGTGTCAGGCACT	alt_4201_RC	16	23	14	15	21	11	33	19	18	19
GAGCCCGTATCCCCCG	alt_4201_RC	43	40	34	45	50	32	45	34	50	39
CCCGATTCCTAAGATC	alt_4201_RC	0	2	0	0	0	0	0	0	1	0
GACATACCCATCCTGT	alt_4201_RC	7	19	12	11	17	9	17	7	12	8
CGTAGACATCGGTCGC	alt_4201_RC	7	24	18	22	19	20	30	18	26	13
CAACAACCGCATTTCT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GCTCACCTTTGTGGGT	ref_4201_RC	17	132	19	13	111	23	138	16	139	15
GTCCGAACCCCAAGTC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CAGTGCGAATGCTGGT	alt_4201_RC	8	9	9	11	25	8	15	7	22	16
CAGGGTCCGGCTTTAA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTATGCTGGACCATAG	alt_4201_RC	3	15	8	1	19	6	17	6	12	2
CGGTCCCCCCTCGTTA	alt_4201_RC	6	4	15	5	12	4	5	8	6	7
TAGTCTGGATGATTTG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTGTACTCCAAG	alt_4201_RC	19	42	27	10	46	27	56	21	47	19
TGTTATGTTAAATGTT	ref_4201_RC	54	89	47	36	67	38	78	48	59	45
AGGCCGAACATACATG	alt_4201_RC	6	5	3	5	4	2	10	2	3	6
GTGCGGAATTCACCTT	alt_4201_RC	7	12	14	5	9	14	13	12	16	4
TCAGATTCCATGGACG	alt_4201_RC	1	6	6	2	15	1	4	6	3	5
CACCGAAACTGACTGG	alt_4201_RC	4	12	6	3	9	6	10	6	6	6
GACGTCCGCGCGTTCC	alt_4201_RC	12	9	8	8	14	10	8	7	4	2
TATAAGGCCTATCGAA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTATCTAACTCCATGA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTTTTGCGTTGGGTTT	ref_4201_RC	49	52	38	46	70	45	56	23	59	39
TCATGTCCTGTGCGTC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
ACTAATGTCAGGTTTT	alt_4201_RC	8	6	13	6	4	13	14	13	8	8
GTTCCTTGTTGGTGGT	alt_4201_RC	17	29	22	24	41	13	25	19	29	28
CCATAGGTGTTCTGTC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CCCACCTAATAGTATG	alt_4201_RC	13	10	5	10	11	10	13	6	7	7
CGGTGGGCGGGTCTGC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CCATTTTGCATCGACC	alt_4201_RC	33	52	50	42	71	36	56	35	52	35
TCCGCGCTTCTTTTTC	alt_4201_RC	15	18	21	13	11	11	19	7	34	28
CTGTACCGGCGTGAAG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GAATGCTCCGGGGGAC	alt_4201_RC	21	52	27	23	34	27	52	22	42	16
AAAAGGCCGCGGATGT	alt_4201_RC	17	17	15	14	16	7	28	13	29	15
TCGCACTGCTAGTACC	alt_4201_RC	17	54	18	9	56	21	51	16	60	20
TCCAGCCTTCGTCTCC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CACCCTACCTCAACTG	alt_4201_RC	49	101	66	51	94	48	104	60	115	49
GAACCCCTAGTTGTCT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTGCGTCCTTTCGCGT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GTCTTCCTGGTGATCA	alt_4201_RC	16	36	33	28	48	18	42	15	32	28
ATGTTTTCATACTTCC	alt_4201_RC	2	7	9	9	13	5	6	1	11	7
GATGGACTTGGCAACT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
ACTGGCACTAGATGCA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GTCGATCCGCCGAACG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CTGCGGCGATGTCACC	alt_4201_RC	21	34	20	36	47	22	32	18	37	14
CGCCGGTGTCATAGAT	alt_4201_RC	21	34	27	23	46	14	37	10	45	23
ACGTACCTAACCCAGT	alt_4201_RC	12	24	16	10	24	15	25	20	34	14
CGCTTCTACGGGACCC	alt_4201_RC	1	1	4	2	0	5	2	1	4	0
CTTAGTGCGAGGAACC	alt_4201_RC	6	4	7	5	13	8	13	6	7	4
TGTTAGACTTCTACGA	alt_4201_RC	29	51	30	36	52	31	46	36	56	26
GATGGCCCTTTTTCGT	alt_4201_RC	112	120	130	117	150	83	157	122	156	99
GCGGTTAGCTACGTTG	alt_4201_RC	30	50	34	29	40	26	52	27	41	29
GAGAGGTAGTAGGCTT	alt_4201_RC	20	34	23	12	30	18	28	15	44	16
CACTTCGACTACATGG	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
GTGATCCTTTTGAGCG	alt_4201_RC	8	7	7	4	20	10	14	7	15	9
CTGGCTTTACGATGCT	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CCATATTCTCCGGGAG	alt_4201_RC	3	4	4	4	3	4	5	0	4	5
CACTCAAAAGAATCGA	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
CCGAGACGCGCCTGTG	alt_4201_RC	8	5	8	5	13	6	8	7	9	8
CCGCAGCTCTCCCATC	alt_4201_RC	0	5	11	7	9	2	12	6	8	3
CGGGAGTCCCAGTATT	alt_4201_RC	58	82	77	82	86	66	82	58	116	59
GATCCTCTAGCCGACC	alt_4201_RC	0	0	0	0	0	0	0	0	0	0
TGCGCAGGTTCGCTTA	alt_4201_RC	38	78	41	47	57	52	76	36	85	38
TTCGGTTACAATAAAG	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CCCAGTAGTACTTGTT	ref_3594_upstream	42	35	45	40	57	35	66	43	48	32
TCACTTGTATATCCGC	ref_3594_upstream	62	63	44	40	72	31	58	35	59	40
TTTGCACCTTGGTTAC	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
ATATAGGCGGGCAGCG	ref_3594_upstream	0	0	0	0	0	1	0	0	0	0
TGTGATTGCTCCTGCG	ref_3594_upstream	30	31	18	22	27	32	37	26	29	18
TTATTTGTGATGACAT	ref_3594_upstream	16	18	28	24	15	28	40	25	40	27
TCACATCGCCCCCATA	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
GATTATAATACCACCT	ref_3594_upstream	19	46	34	39	38	27	31	32	39	23
TATAGACAATTTTAGT	ref_3594_upstream	13	10	14	14	11	13	17	17	15	13
CCCTTGTGTACGGGTT	ref_3594_upstream	18	15	18	16	23	15	22	12	21	9
CTCGGTGCTTGCTTAT	ref_3594_upstream	147	220	180	169	231	159	241	134	242	145
GCCATCGTGCCAAGTT	ref_3594_upstream	37	76	41	30	81	25	62	19	68	34
GGCACCCGTCTTACTC	ref_3594_upstream	13	35	22	14	22	12	15	12	22	17
TACACGCCTCTGGTTC	ref_3594_upstream	134	179	141	121	190	108	207	102	210	81
CCGTGCCGAATTAAGC	ref_3594_upstream	61	92	64	67	80	63	80	47	112	64
TTAGACATGGTGGCCA	ref_3594_upstream	41	57	58	49	62	49	74	49	88	40
AATTTGCATTTATTGG	ref_3594_upstream	29	55	35	29	61	33	41	24	63	26
CAAGGCCGGTTTCCGG	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CTAATCATCTCATGAT	ref_3594_upstream	11	15	17	8	27	7	27	15	21	12
AAGATTGCATAATAAC	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCCATTACCATTC	ref_3594_upstream	14	18	25	14	19	12	17	7	21	16
GCTCGTTTTTCGTTTT	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGAATTGTCTACC	ref_3594_upstream	40	59	62	36	55	46	56	37	72	29
ATTACGCCGTGAGTGG	alt_3594_upstream	72	106	75	76	114	90	106	79	114	48
ATGGTTTGGACATGGC	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTCTTTCTTTTG	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTAACTCTAAATT	ref_3594_upstream	5	5	10	5	4	9	2	7	6	7
CGGTAAACTGTCGACT	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CGTGATTGCTTCCCGG	ref_3594_upstream	76	76	88	96	101	75	102	70	96	53
TTTTGGTGCGGGTTGC	ref_3594_upstream	19	37	30	23	22	23	32	14	50	22
TGGTCTGCTTCCGCTT	ref_3594_upstream	60	56	49	56	49	58	58	50	68	40
TATAACTTGTCATGGG	ref_3594_upstream	24	30	34	18	25	17	29	16	21	15
GCCTTATTCACTTACT	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CAGTCTGGGCTTTCGC	ref_3594_upstream	10	12	4	3	8	6	4	5	8	3
GCCTTTCTCTTTTGTT	ref_3594_upstream	17	22	27	13	23	16	22	19	23	25
TTTGTGTTGGGTTGAA	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGCACGAGCATAA	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTCCGGTTATGCT	ref_3594_upstream	20	41	20	22	31	20	42	17	51	11
CGTATCGAGCCCGGTT	ref_3594_upstream	8	7	12	11	7	6	9	3	18	14
TAAGGGTCAGGATTCG	ref_3594_upstream	1	2	0	3	3	1	6	0	2	1
CAGCTGGTCCAGTTAC	ref_3594_upstream	29	34	21	17	24	16	22	19	28	17
ATTACACGGCTTTATA	ref_3594_upstream	40	43	30	36	53	25	53	41	56	40
TTGGGCACCGTTGCAA	ref_3594_upstream	26	53	47	29	52	25	47	34	65	39
TACCTCTGACGTCACC	ref_3594_upstream	13	9	15	15	10	3	15	10	17	13
CTGGTGGGCAACAGTT	ref_3594_upstream	83	105	93	66	118	86	129	66	137	55
GTCTCTAGTTATTGGA	ref_3594_upstream	26	25	30	27	36	26	37	25	55	26
TTCGTTGTACGAATGC	alt_3594_upstream	39	77	43	39	65	56	65	39	57	56
AACGATGTTCAAAAGT	alt_3594_upstream	102	160	133	120	155	105	152	115	140	94
CGCACCCGGTTAAGTC	ref_3594_upstream	17	28	13	21	24	27	26	15	28	23
GAGGGACGCCTTTCCA	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CGACTCCATCGCTAGG	ref_3594_upstream	102	124	136	144	162	96	169	87	145	82
CTGACGTTGTCCTTGC	ref_3594_upstream	0	0	0	0	1	0	0	0	1	0
GCTTAAGCTATTAAGA	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGCTCCGTCCCTT	ref_3594_upstream	17	16	11	8	10	10	15	10	13	11
CTTCTATAGTCCTTGG	ref_3594_upstream	15	24	8	8	15	11	16	13	19	11
TTCGATACAGTAGCGA	ref_3594_upstream	82	100	100	75	104	53	108	81	76	73
ACACACGCGTCGATGC	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCTGCCTTAGTTG	ref_3594_upstream	62	97	68	50	100	56	95	70	82	53
ACCCTCCATTGAAAGG	ref_3594_upstream	85	88	97	73	126	72	114	76	108	64
TTTGCGTCGTCCGTTC	ref_3594_upstream	176	246	255	183	232	175	258	166	276	164
AGGTCGGATCTGGGAT	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CTAACCCGTGTTTGCA	ref_3594_upstream	1	38	8	7	44	6	43	5	30	6
CAACTAACAGTAAAGT	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTTGACAAAGGGG	ref_3594_upstream	220	268	268	233	318	197	297	188	295	194
GAATCAAATGTAAGGC	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CCACAGCTTGTGACCC	ref_3594_upstream	7	3	4	2	6	4	9	10	9	2
GGCATGACCTCATATA	ref_3594_upstream	11	4	9	10	5	5	3	5	2	6
TTCCCAGCGTCTGCAT	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTTACGACTGGAT	ref_3594_upstream	10	11	17	9	22	10	9	19	10	7
TCGGATTTATATCACT	ref_3594_upstream	85	99	93	85	85	80	108	52	98	97
CTGACATCTGCTATGC	ref_3594_upstream	104	177	93	122	184	105	184	83	195	102
TCGAGATGTTTCCTGA	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
TATGGGAACGTGAGCT	ref_3594_upstream	18	30	35	25	35	25	42	18	32	27
GTCCACCACTGGAGTT	ref_3594_upstream	15	23	22	14	23	17	23	16	23	7
GTGTATGCTTTGAGAA	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
CGGCACCTAGATGGCC	ref_3594_upstream	105	118	122	113	117	102	120	91	111	75
GGACATCGAAGGTCAC	ref_3594_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCCGATGTATGGG	ref_3594_upstream	19	42	38	29	21	31	22	29	33	27
GCAGATCATTTGAAGC	ref_3594_upstream	28	76	42	24	47	58	60	23	68	31
TGAAGGCTCAGGCCAG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
AGTTCGGTTAGGGTAC	ref_6102_new	3	12	3	8	13	8	14	6	22	4
AAACTGGGGCGTTCCT	alt_6102_new	8	16	12	6	13	12	23	9	14	10
CCTACACCTATTTTTA	ref_6102_new	7	28	8	8	23	3	18	5	25	3
TCGAGCTCCGCATTTC	ref_6102_new	11	39	18	8	24	9	19	13	22	21
GTTTTGTTCATGCAGA	ref_6102_new	6	7	7	5	13	5	7	7	7	4
GGGAGTTCGCGATCGT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
ACGCGATCGCTGCGTT	ref_6102_new	7	22	15	9	22	8	30	7	20	6
CAGCCCGACGGCTCAC	ref_6102_new	7	19	6	6	26	5	25	5	25	8
CCGACTATTGTTACCA	ref_6102_new	4	3	4	4	6	1	10	4	8	3
ACCAGACCCGCCGAGT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TTGTTCTCCTGTTTGA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GCGCACTTATACGTTG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GCTGTGTTTTGCATAG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CGCGCCGTGGTAGGCA	ref_6102_new	8	13	6	13	13	3	18	5	20	2
TCGTCGGGGAGCTCGG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TCGTGCCCGACCCCAG	ref_6102_new	7	26	3	11	13	5	12	7	15	3
ATGATTTACCGGGTAT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GTAGTCGCGTGGCAGT	ref_6102_new	60	116	73	55	103	62	122	55	147	45
TTCAGATCGAAAACCA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CCTGTTACCACTCGCA	ref_6102_new	4	15	7	8	14	7	18	7	22	4
CTTAGTGTATATTAAG	ref_6102_new	18	50	20	30	51	22	64	25	49	37
CGTTATGCGTCGCGTA	ref_6102_new	28	67	43	30	75	38	76	24	78	30
CTCACCTGAACACATT	ref_6102_new	0	2	0	0	10	0	7	0	9	0
ATGCGTGGGTCCGCAC	ref_6102_new	14	36	16	15	35	15	26	14	43	13
GTCATGACTTTTATGT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CCACCTTACAGTTCCG	ref_6102_new	15	54	17	16	55	19	53	23	54	12
GTATACAATAATCTTA	ref_6102_new	16	11	11	10	17	10	24	3	17	13
TCCTATACGAGCTTAA	ref_6102_new	19	41	23	26	46	23	38	9	54	11
AAACGGGGTCATATAA	ref_6102_new	13	39	15	19	34	16	40	11	45	16
TATTAGACTTTGCGTG	ref_6102_new	9	13	5	3	5	5	10	9	15	7
TTAACCATCCTGACCT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CCTTCTTGCCGTTCAA	ref_6102_new	1	19	4	2	11	4	6	0	14	2
CAGTGCTAGTAAGAGA	ref_6102_new	14	24	34	14	25	13	25	18	34	20
CCTTCATGGCCGCACT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GGCGTGATTTTGACGT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GGTGGGGAAGAATCAG	ref_6102_new	11	22	18	14	25	16	21	11	16	9
GCTACAAGCTGTTTTC	ref_6102_new	11	20	18	11	22	9	31	12	25	10
CCAGGTCCGCGGCTCG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CCCTCGTCAAACCACA	ref_6102_new	2	0	0	0	0	0	1	0	3	0
CGTTTCTAGTCACTAC	ref_6102_new	14	25	13	15	27	14	35	6	37	18
CAAACGGATTTCCGTC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TCCATAGCGGTAAACG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TTTCCGGTTACAAGCT	ref_6102_new	17	13	26	19	17	10	19	9	18	22
ACTCAGGTTCTCGGTG	ref_6102_new	18	38	25	18	39	22	36	24	51	17
GACTTTGCTTCATACA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TCATCGTATTATAAAC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TTCTGGTAGCCGAGGT	alt_6102_new	21	42	15	13	33	17	43	19	48	16
TCATCTCACTGGCCAT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TTACCCGGCACGACTC	ref_6102_new	9	20	18	12	24	9	25	6	12	11
TTACGGACCACTCAAT	alt_6102_new	12	26	12	12	22	13	28	12	16	4
GCTGACATTTCATCCT	ref_6102_new	6	7	1	3	9	2	12	5	7	2
CGCGTCATATCTAGAA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TTAGTTACGAAAGACA	ref_6102_new	10	21	10	10	25	7	25	10	20	7
CTGTTTGTGGCAGACC	ref_6102_new	13	23	20	17	29	8	23	9	36	10
GCGACCAGACTTGCTG	ref_6102_new	28	43	29	23	44	28	54	13	47	24
ATGTCCCCGCAACTTA	ref_6102_new	0	0	1	0	0	0	2	0	0	0
GGGACCTCAGTTCGAC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GCGAACAGATTTTTTG	ref_6102_new	6	14	11	7	21	6	8	8	11	6
CATAGGATGAAAACCC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CGCACGCCTATAAACC	ref_6102_new	11	37	12	11	42	7	34	18	37	11
AGCTGCTGTAACGTTT	ref_6102_new	6	15	8	7	13	8	27	4	17	3
AGTTGTGGGTCGGTGC	ref_6102_new	54	101	67	52	121	56	111	50	142	44
CTAGCTTGATCTGTGC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GGTGCCTATGCAAGCA	ref_6102_new	10	26	8	10	33	5	24	5	24	14
CATACTGCTGGCACTT	ref_6102_new	28	57	31	32	68	23	68	25	78	30
CATATAGAGCTTCTGT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TCGGTCTGCATCGTTA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
AGCGATTAAGAACATC	ref_6102_new	5	14	10	7	20	6	19	5	11	5
TTAAAGAAACCCAATT	ref_6102_new	44	123	51	38	76	47	110	46	107	49
TTTCCTTAAGCGTAGG	ref_6102_new	16	45	21	17	30	16	39	20	27	11
TGACTGTTGTGCCGAG	ref_6102_new	45	94	55	32	92	38	101	59	105	41
TGTGGCGTCTTCATTC	ref_6102_new	8	24	14	16	17	5	21	16	29	20
GGTAATTATCATAGCT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
AGGGGCGCCGGCCGAG	ref_6102_new	17	24	8	22	32	17	22	20	39	18
CCACCTCCGCCACCTG	ref_6102_new	13	52	23	13	28	20	39	11	37	19
CCGTATTAACTGTCTT	ref_6102_new	2	26	8	13	46	7	44	12	41	5
CGCCTTGATTTGGATT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
ACACGAGCGTTCTGAG	ref_6102_new	3	5	6	3	5	2	8	1	10	0
GCCCTCGAAGACACCT	ref_6102_new	32	58	29	27	79	20	52	22	69	27
ATACATGTGTGTCTGA	ref_6102_new	13	18	12	8	19	7	23	9	22	6
GCGGCTCAGTTTATCT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
ACGGGGCTAGGATTTA	ref_6102_new	55	87	47	40	59	39	83	26	70	33
TCCCGCTAGGGGTTTT	ref_6102_new	4	7	5	4	16	6	17	5	4	4
GTACTTCACGTAAGCT	ref_6102_new	5	2	4	1	11	2	10	2	4	4
CCGGCTGATATTTTCC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TGGGGTACGGTACGTT	ref_6102_new	17	31	15	18	33	12	28	11	34	13
CGGGATCACAATATAC	ref_6102_new	13	39	31	28	39	20	44	10	22	19
CTTTTTCTGGGCTATC	ref_6102_new	7	17	9	7	26	5	21	5	25	11
AAGCATGATGACATGT	ref_6102_new	18	29	15	22	28	13	27	14	30	15
GGACGCTGTGGGACCT	ref_6102_new	6	7	4	3	6	2	10	3	9	1
TTCGTGTTCCTCCTCA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
AGCTCAGTCTAGAACA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TCGGATCCCTCGCTGA	ref_6102_new	35	42	45	23	42	23	49	25	60	18
CTAATAAGCTCGCCAA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
GTCCCAGGGTTGCATT	ref_6102_new	6	23	14	4	26	8	14	11	31	5
TCTTTTACTACCGCAT	ref_6102_new	22	65	30	24	75	27	61	29	48	16
AAATAAATGGTGAGGT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TACGGTCCTTTATGAT	ref_6102_new	8	21	6	2	10	8	21	7	20	10
CTCGATCTGTGATCTA	ref_6102_new	13	42	14	17	42	10	43	13	46	12
GGGTTTCTGTCTTTCA	ref_6102_new	30	74	33	31	69	38	64	41	71	34
GCTATCAGTTTTACTT	ref_6102_new	16	38	16	16	43	17	45	17	47	15
TGATCATCCGCGGGGT	ref_6102_new	5	8	6	7	20	2	11	5	8	6
ATTTTTCAACTTTCCA	ref_6102_new	8	12	16	6	9	15	4	6	17	7
CTTCGCCACGGGGAGA	ref_6102_new	4	13	7	6	13	11	15	5	9	4
TTTGATTGCTTCGACT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
AGAGAACAGGCTTTCC	ref_6102_new	6	9	6	5	7	2	16	5	21	6
CTTGTCCTCGGCCCTG	ref_6102_new	0	1	0	0	0	0	0	0	1	0
CTGGTGTGTGATAATG	ref_6102_new	39	105	48	45	128	51	96	46	104	28
AATATAGTCCCCATTG	ref_6102_new	7	23	17	11	21	7	23	16	26	8
CGGTGGACATGGACGT	ref_6102_new	2	8	7	3	13	0	5	5	18	3
TCAGACCCCTGAAGTT	ref_6102_new	19	43	31	30	54	23	47	20	48	9
GTTCCGTTAAACCAGC	ref_6102_new	13	16	5	7	18	3	14	4	15	12
TAATCTCCTGTAGTAT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CACGAGCGACACGGAG	ref_6102_new	51	52	37	33	70	39	69	25	64	23
CGTTGATTCTGATGAC	ref_6102_new	31	87	39	35	75	29	82	27	71	24
TGTCTAAACATTCGTG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
ACTATTTTGACGCTTC	ref_6102_new	14	45	16	21	32	23	45	14	39	12
TTTCTGGTCACGTTGT	ref_6102_new	1	6	2	5	2	2	4	1	4	1
TCTAAATATGGCCCGG	ref_6102_new	0	0	0	0	0	0	0	0	0	0
ATGCAATTAGACATCT	ref_6102_new	6	9	9	5	6	5	5	4	7	2
TTTTGTTCTATCCCTT	ref_6102_new	21	29	25	13	29	20	28	18	51	23
CAGGATCCCTGCTTTC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
AATGATTTTGTGGCGT	ref_6102_new	32	32	40	30	18	31	29	18	29	27
TGAATGGTCCGTAAAC	ref_6102_new	16	30	12	7	32	17	33	14	41	18
CAGTGTGTACGCCGGA	alt_6102_new	83	192	114	98	216	87	196	89	225	69
AGACTCGTTACGTGTA	ref_6102_new	23	24	28	18	23	28	27	22	36	15
TCGCCGCGCTCAAGAG	ref_6102_new	19	56	21	18	67	17	44	15	75	13
CTACGCTGTCCTGGGG	ref_6102_new	22	54	24	24	53	20	55	21	48	21
CTCAGCCACTTATGCT	ref_6102_new	0	1	0	0	3	0	0	0	3	0
TCCTGCCGAGCGGGGC	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TGTCTCGTTTCGTTCA	ref_6102_new	14	26	12	12	19	6	30	9	25	10
TTTCATTGAAAGCGTT	ref_6102_new	57	83	46	54	97	40	83	47	91	46
GGCAGCGAGTGCGCCG	ref_6102_new	5	14	10	6	22	8	15	5	24	8
CTTATCGTGGGCAGTC	ref_6102_new	13	16	12	7	25	10	19	6	22	10
CGCTCTTGGTACGCAA	ref_6102_new	2	1	2	2	4	2	5	2	8	0
GGGTGTATTTTTAAGG	ref_6102_new	2	4	6	3	5	2	8	2	7	3
TCGACGTAAGTAGTCA	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TGCGTGCGAATCTTCT	ref_6102_new	13	32	14	13	28	17	25	16	29	13
TCTCGCTACTACGAAA	ref_6102_new	181	279	151	134	345	140	311	124	302	149
CGCGCTGTTCAATCGG	ref_6102_new	24	69	35	32	66	24	63	31	72	37
TGACTGATTTACAGGT	alt_6102_new	84	193	122	104	204	76	206	78	196	76
ACACAGGGAACTCTAC	ref_6102_new	4	18	3	7	16	6	13	9	16	5
AATGTAATCTTCTCTT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CCTGCTTAAAGATCTT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
TTGCGCTATTGAAAGC	ref_6102_new	7	11	8	2	20	11	13	6	18	7
CAACGGTCCACTGCCT	ref_6102_new	0	0	0	0	0	0	0	0	0	0
CGGTTGCCTTGGGCCA	ref_6102_new	8	16	5	11	18	13	13	12	22	7
TTACTATCGGTCCACT	ref_6102_new	29	67	40	25	71	38	83	22	73	29
GATCCGTCCCCTGCTG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
ATGAATTGCTCAACTT	alt_743_negative	20	30	23	13	37	16	50	18	35	10
CTCAGTTCCGACGGAT	alt_743_negative	18	23	11	12	29	13	33	7	37	9
AGTGTCTGTATCGATC	alt_743_negative	3	12	2	3	13	8	8	4	14	2
TAGTGGTAGAGCCTGC	alt_743_negative	22	69	42	31	63	23	71	28	90	37
TCGTAGCGAGTGTGGC	alt_743_negative	4	7	10	8	8	4	20	7	15	2
CGGCTGCTTGGATTGT	alt_743_negative	36	69	37	31	107	24	92	27	78	43
CCCACACGACTGTCAC	alt_743_negative	16	62	22	17	54	19	73	12	80	18
GGCCTACCCATGTGGA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GCTGATCCGCTCGCAT	alt_743_negative	9	29	20	15	24	10	32	11	28	5
GGTGTTTAGAGCTTCA	alt_743_negative	1	5	0	0	0	0	0	0	0	1
GGTCTTTGAGACGACG	alt_743_negative	1	11	5	2	9	2	9	3	6	3
GTCCGTATACTATTAA	alt_743_negative	6	11	8	4	7	9	20	4	14	4
CGTCTTTATACTTTAG	alt_743_negative	4	16	3	7	12	2	12	8	5	2
TAAGCTACCTCAGTCG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CGATCTGTTGAGATAT	alt_743_negative	31	72	37	40	66	32	77	41	67	27
ACCCTTTGGTTCCGTG	alt_743_negative	21	52	28	20	47	20	45	15	63	21
CTGGGATACTATGGCT	alt_743_negative	2	3	0	0	6	1	1	5	2	0
ATCGGAATGGTTTCCA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CTTGTCCTAATTTTTA	alt_743_negative	16	43	18	14	45	18	39	25	43	15
GTGCATAAAGCTTCCA	alt_743_negative	57	110	79	53	107	59	109	54	117	60
CCGATAGTGCGGGCCC	alt_743_negative	0	2	1	3	1	0	0	2	3	1
CTCTTTCAGTCCATGG	alt_743_negative	3	18	8	6	24	4	19	8	21	3
CGGTCCTTCCATGATA	alt_743_negative	7	13	5	3	11	1	10	2	6	0
GCCGCCCCATTGGTGT	alt_743_negative	90	169	112	90	179	71	183	104	196	81
TTTTTTTCAATGAAAA	alt_743_negative	19	32	13	10	28	8	23	11	20	12
AATGGTTATTGTCAAC	alt_743_negative	35	91	36	27	76	31	72	38	98	22
TTTATTAGTTCCATAT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GATGTCGGGAATTTTG	alt_743_negative	9	17	11	11	11	10	19	8	14	8
TATTCCGTGACCGGAG	alt_743_negative	12	21	4	8	21	6	16	4	13	8
ACCTTGAGCTTTTTAG	alt_743_negative	13	11	6	8	12	6	19	2	9	5
AGACCTTTAATGGTGT	alt_743_negative	11	27	19	19	30	13	33	13	31	14
TGGGCATCGGCTCTAG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CGAGCTCCCTTCGGGA	alt_743_negative	17	42	21	17	25	8	37	14	27	20
GAACTAAACTACGAAA	alt_743_negative	10	16	12	8	13	2	18	3	19	3
ACAGGTTCAGATGATG	alt_743_negative	48	109	59	48	102	48	118	64	114	68
GGCAATGTTCTTGTCC	alt_743_negative	0	0	1	0	3	1	1	0	2	0
GGATATTGTGCTCGGA	alt_743_negative	19	41	15	27	50	18	54	14	50	14
CATGGGTCGATCAGTG	alt_743_negative	1	4	1	1	5	1	1	0	0	3
TTAACTGTTAGTTGCG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
AGAACATACAAACGGC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CAACCGTGCTTAACGT	alt_743_negative	5	23	10	13	36	11	45	13	34	11
CCTCGAAGTCATGCCC	alt_743_negative	6	10	6	3	5	1	14	1	19	2
ATATCACTTCTATTAC	alt_743_negative	20	32	16	10	55	27	36	13	29	13
TCCCAGCGGTCACAAT	alt_743_negative	16	19	12	11	15	10	31	8	19	9
GGATATTTCCGCAACG	alt_743_negative	2	5	4	2	6	4	9	6	8	5
CGACATGAGAGCGAAG	alt_743_negative	2	3	2	2	4	1	3	5	4	0
ATGCTGTCATGGCCTT	alt_743_negative	13	21	25	9	28	16	24	17	32	19
CTTGTAGGAACGTTTT	alt_743_negative	3	4	1	1	6	3	3	0	4	0
TATCTTATTATCTCTG	alt_743_negative	13	26	24	18	24	15	25	9	23	23
CTCTTTGTGTCCTAGT	alt_743_negative	7	20	7	11	27	8	31	7	29	11
CACCATTTGTAAAAAA	alt_743_negative	6	25	9	7	24	13	26	9	40	12
ATGATGGCACATTCGC	alt_743_negative	6	2	1	2	6	2	6	2	3	1
ATATCGCTTGATTACC	alt_743_negative	20	45	23	15	44	19	32	28	41	27
ATGATGCTCGGGCTAA	alt_743_negative	9	15	8	9	17	5	11	9	10	2
GGATGATCTGAAACCC	alt_743_negative	15	24	19	8	32	22	23	9	32	19
CGAGGCCTTCCGTACG	alt_743_negative	32	51	42	42	56	26	84	33	70	23
ACCCGACGATGCGGGG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CGAGGAATTTCCTTTT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
ATGAACATTCCGTCAG	alt_743_negative	9	24	15	15	30	17	18	11	36	8
CTCGGTCCAAGGCTTC	alt_743_negative	13	38	15	18	29	18	31	18	45	13
CGGTTAGTAAGTGTAA	alt_743_negative	4	16	3	8	12	3	11	4	14	7
GACGTGACTGACAGGT	alt_743_negative	8	4	9	3	7	5	13	8	9	4
AATTTAATGGGTCCAT	alt_743_negative	11	34	17	20	28	24	39	11	47	19
AGCCTTATGACCCATT	alt_743_negative	12	42	36	17	49	15	44	16	34	27
CCGTGTCCACGCTGAT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TTCGCAATTGCTTCAG	alt_743_negative	29	45	21	23	52	24	48	13	59	16
TGTATGGGTTTTGCTA	alt_743_negative	3	4	3	2	2	7	9	2	13	2
TGAATCTCTACCCTTA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GGTAAAAGGGGACCTT	alt_743_negative	36	79	23	24	42	29	42	22	63	19
TAGCATGGCAAAGTAA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TATTCGGGCTCATCGT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TGTCTCCGCACGGAGC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CCAATACGAGGCCACG	alt_743_negative	19	28	25	19	35	29	54	7	48	18
AAGAGATCTTAGCCTT	alt_743_negative	13	37	22	19	45	12	31	14	43	9
CGATCATACCTATTTT	alt_743_negative	20	40	23	16	27	21	35	22	34	12
CGAGTGCAACAGGCGG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
AGGTCGAGCGATACAG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TCATCCATCCCCAGGC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GTTCACATGAACTGAT	alt_743_negative	13	26	9	17	24	15	33	11	31	4
CCTCGGTACGCCGTCA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GGTCAGTGATCTTCTC	alt_743_negative	11	21	13	9	17	16	30	7	29	12
CGCGGTTATTTAGCGT	alt_743_negative	2	5	2	3	2	1	10	0	6	0
TGCAACTAGCTGTCTA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
ATGTATTGGTTTACTT	alt_743_negative	10	13	2	7	18	3	18	5	8	5
AGCCCTCTGCGTAATT	alt_743_negative	4	6	6	8	15	4	10	4	11	3
TAGAGAGCGAGTCGTG	alt_743_negative	3	9	9	7	10	4	10	7	10	5
AGGGCACTGTTATTCC	alt_743_negative	25	53	24	38	63	15	63	20	58	19
GGCTACCCCGGGCCTA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
AGCATGGGTTCATCTT	alt_743_negative	15	10	6	3	12	7	15	5	8	4
ACAGACAATCCCCGTG	alt_743_negative	4	7	1	7	15	2	8	5	10	2
GACTGTGTAATCGTCA	alt_743_negative	10	25	11	7	30	4	26	7	28	5
ACGCTCATAGTTGGCC	alt_743_negative	36	54	56	33	65	33	59	35	68	25
ATGAACGTTTTGTGTG	alt_743_negative	7	18	7	6	19	1	5	8	10	5
GCCAGTCGACCCTTCC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CGCCAAGAAAGAAGAA	alt_743_negative	38	47	36	36	70	35	70	28	64	23
CTCTGGCATGCTTGGA	alt_743_negative	12	41	17	8	35	8	45	15	36	9
AATACAGTCGTCCCCG	alt_743_negative	0	0	0	0	1	1	0	0	1	0
GCCATCTACGGTTTCG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
AGATCTAGGGGGGGAC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CGATGCAACGTAAGCT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GGGGGGCTTCCCTCTA	alt_743_negative	6	6	4	7	11	5	12	3	14	4
CAAGGCTACGTTGATG	alt_743_negative	0	0	0	0	0	1	0	0	3	0
GCCGCTGACGACTGTT	alt_743_negative	19	34	24	20	42	27	53	19	57	20
CGCTAAATCTGGTCGG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TTCCCGGTAGGTCTGC	alt_743_negative	33	48	34	32	58	24	51	22	47	26
TATCTGCTTTCTGAAC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TGAGAAATTAATTTGC	alt_743_negative	9	18	12	7	23	8	11	5	25	3
TTTTTTCTCATCCACC	alt_743_negative	25	26	31	24	36	29	31	20	35	27
CCACGCTTCATAAACG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TACTTTCCAGGATACA	alt_743_negative	8	14	12	5	15	9	15	8	10	7
TGCAAGGGGGCCATGG	alt_743_negative	14	18	14	7	31	17	17	9	26	12
CGCTCTTCTCGTGCTA	alt_743_negative	3	8	10	4	9	9	14	8	16	1
TCAAGCAACCAGTGTG	alt_743_negative	5	17	8	5	15	4	12	1	11	7
ATAAGATACTTTCTAA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GCCCGCAATGACGAGC	alt_743_negative	3	2	2	5	6	1	8	1	3	2
TGCGGTGATATACACT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CGCACATGCAAAGTTT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CCAGCCACTATTTCTC	alt_743_negative	1	7	0	2	9	0	11	1	6	1
AGTTTCATTCTAGCGA	alt_743_negative	41	79	44	46	88	33	78	37	92	35
ATGTCCTACGATTTTG	alt_743_negative	2	6	5	8	7	2	8	5	6	4
AATCTGATCGTTAATC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
ATTTATTGGAGTATCC	alt_743_negative	3	20	11	4	10	4	8	1	15	2
ACCCTCGACAAGCTGT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GTCTGTTCCGTACTCC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
CGTAGGCTTGCGTTCC	alt_743_negative	9	23	17	8	26	11	26	13	29	13
GTCGTGCGCTCGTACC	alt_743_negative	8	11	8	6	24	4	20	7	11	3
TTTTACTGCAGAGGTA	alt_743_negative	15	33	31	17	41	14	47	16	36	18
AGCACATCATTTGCCA	alt_743_negative	9	11	8	7	20	6	18	6	13	10
GATCCATAACCCGTCG	alt_743_negative	0	0	0	0	0	0	0	0	0	0
AGCTTTTGTCTTTCTC	alt_743_negative	9	19	14	4	19	8	12	11	18	9
GTTCGCGGAAACGCTT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GCTTTCCCTAAATTTT	alt_743_negative	107	204	153	104	213	86	196	111	243	99
CAGTATCATAACCATG	alt_743_negative	4	5	5	3	5	0	3	1	6	2
AGCTGTTGTCTTATCC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TAGGCGCGACCAATTG	alt_743_negative	12	18	10	6	20	9	22	6	19	10
TATCATCGGGCGTGTC	alt_743_negative	23	41	16	20	49	26	31	17	60	17
CTGATCCCTAAATTAA	alt_743_negative	28	88	45	33	94	42	103	38	94	44
ACCGCTGCGTTTTTCT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
ACCATAGCTCCTGAGA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TCTTGCATGCATAAAG	alt_743_negative	9	12	10	7	16	12	36	7	28	10
CTACTTCTGCATGAGT	alt_743_negative	0	0	0	0	0	0	0	0	0	0
TTGGTCATTCCATGTC	alt_743_negative	0	0	0	0	0	0	0	0	0	0
ACCACTTTAACCTTAA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
ATTGCTGGGTTGTTTT	alt_743_negative	34	56	42	37	55	30	65	24	82	41
ACAGTTTCCTTGCGTA	alt_743_negative	0	0	0	0	0	0	0	0	0	0
GACTCCTAATGCTTTT	alt_743_negative	15	38	24	20	44	10	36	17	45	11
CGTTTACGATCATTCG	alt_743_negative	38	91	56	49	98	43	93	45	110	36
ACTCTCAGACACTCAG	alt_743_negative	5	9	4	3	9	4	10	3	12	0
AAATTGGCAGTGTCTT	alt_743_negative	7	26	11	8	14	7	16	4	33	1
TTCTGAAACCTCCGCG	alt_743_negative	63	129	82	57	141	64	110	71	156	50
TTATGTAACATCCATA	alt_743_negative	6	11	3	4	15	6	12	5	12	4
ACCGCGATCAGCCCGT	alt_743_negative	5	8	6	4	6	3	12	3	11	7
GACTGTTCACTGCTAC	alt_743_negative	59	105	66	40	122	51	97	56	141	40
GGTGTTGAAAATTCTT	alt_743_negative	12	48	24	14	45	19	61	13	32	22
TGTCATTAAATCGCGT	alt_743_negative	5	11	6	8	11	4	11	4	10	11
AACGTTTGTACTTCCG	alt_743_negative	7	12	8	3	11	2	3	4	8	1
TACTTTCGTTTTTTTC	alt_743_negative	15	9	9	5	6	6	10	6	7	9
CCGCTCTTTCTTTTAT	ref_829_RC	27	32	24	26	49	20	37	25	45	25
CACAAGTGTCCAGGAA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
ATAGGCGGAATCACAA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GCACGCATCACTGATC	ref_829_RC	15	18	19	19	23	8	22	15	15	11
GATATATGATTTTGTG	ref_829_RC	9	20	14	12	24	8	16	8	23	6
TTCAAGGAGAACATTT	ref_829_RC	16	16	14	11	18	16	24	12	19	8
TGGGTTTGGTATCTGA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
ATTCGGCGCTCAACTT	ref_829_RC	42	51	42	52	69	41	48	36	38	44
GAGGGCCGATCAGCGA	ref_829_RC	26	26	19	22	25	18	19	24	25	16
TCAATTCTGGGTTCTA	ref_829_RC	136	168	120	133	188	106	194	102	177	118
TTCAATTACGGCCCCC	ref_829_RC	9	11	6	13	11	11	5	9	12	4
GGACTGTGCCCCCCGC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CACTAATTCGAGTCTT	ref_829_RC	54	83	65	64	86	68	77	44	84	53
ATGAACCTTCTAGCCA	ref_829_RC	44	62	66	58	56	51	58	29	68	36
GTTTGGTTCCCTCTGT	ref_829_RC	23	26	20	21	15	17	33	18	39	20
TTATCATAGTTTTCCA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CGTGTTAACCCTTACG	ref_829_RC	32	47	54	56	42	34	45	48	47	33
TTGGGGGCCTCTTTCT	ref_829_RC	2	2	4	7	2	3	5	4	6	8
GGTTGGCATCAGGGCG	ref_829_RC	66	88	67	45	77	58	71	47	64	63
GTCCTTCGCTTGTATC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CGGTTGTCCCGATATA	ref_829_RC	3	7	9	5	10	5	10	4	11	4
TCTCGCAGCCCCTATA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TTCGGTGCACTCGCTT	ref_829_RC	1	3	4	1	5	4	4	2	5	2
CTTCGGTGGTTCACCC	ref_829_RC	33	38	26	35	50	30	40	32	51	25
ATCCTCCCCGAGTCTC	ref_829_RC	6	9	3	1	11	6	11	2	7	2
GCGTCTACGTATTATT	ref_829_RC	5	2	6	4	1	7	3	6	6	5
CTGTTCTGCGAGGTTT	ref_829_RC	17	23	17	14	23	14	21	20	30	8
CTAATTTTGCAACGTC	ref_829_RC	3	15	3	8	13	9	7	5	12	6
ACCTCACTGTATATTA	ref_829_RC	29	42	29	42	61	36	64	36	66	36
CTGCGCTTCATGTGGG	ref_829_RC	0	6	7	1	3	6	5	7	2	0
GTGTCTGCACCTTGTC	ref_829_RC	3	8	7	6	3	2	5	2	7	3
TTACACGGTTGTTAAG	ref_829_RC	5	8	2	5	3	3	2	8	10	1
TGTCTCCTGGCCTTTG	ref_829_RC	19	23	30	19	26	17	28	11	32	19
ATCTCACCTACTGCAA	ref_829_RC	9	15	11	9	15	15	16	3	14	7
TTTCAAATAGGGTTCC	ref_829_RC	41	62	57	51	55	51	72	59	61	32
GGCACTTAGAGCCAAT	ref_829_RC	42	40	53	32	46	36	78	33	54	36
GTATCAGTCTCTCACA	ref_829_RC	3	12	3	7	10	3	5	3	5	6
GCACTGCACAGAGGCT	ref_829_RC	14	9	11	10	21	16	14	9	16	10
AGAATTATCGAGTATA	ref_829_RC	72	77	99	98	95	72	124	63	98	63
CTACTACCGCAAACTG	ref_829_RC	11	28	14	21	27	20	31	10	32	10
GATTACTAAACTACTG	ref_829_RC	19	33	35	40	37	20	36	28	51	21
GTTATCGTTCAACAAG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
ACTGATTCGATATGCG	ref_829_RC	22	32	21	16	29	15	31	20	23	23
CTACGGCTCTCCTCGG	ref_829_RC	27	19	34	34	40	26	31	34	36	28
CTCTCCCATAGTTAGA	ref_829_RC	8	17	15	14	18	10	32	9	24	7
TTTCTTGTTACATTAG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GGCGCAGCGTATCACA	ref_829_RC	47	35	33	34	31	20	35	21	48	29
ACGCCTGGACCGTTTG	ref_829_RC	2	9	8	6	4	4	8	7	14	4
TGTGTTGCGCGTCCAC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TGCCAATTGTGTCAAA	ref_829_RC	13	35	17	15	19	16	16	17	26	10
CGAGTGATTGCGCCTA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
AGAAGGTTGCAACGCC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TAAAACCATTTTCTAT	ref_829_RC	50	42	43	42	60	38	59	52	45	36
AAACTCCAGCTTTTCG	ref_829_RC	29	39	27	29	47	24	43	21	37	24
GATCGTACCGCGATAG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TGATGCGTCAACGTCC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CACACCTGGGTCATAA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GTTTATCGTTCTGGAG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
ATTGCTATAAAAGACC	ref_829_RC	24	44	28	21	25	19	21	15	16	10
TTTAAGCCACCGTATA	ref_829_RC	9	12	8	8	8	11	17	9	15	3
AGGGTGTTTATCGAAT	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GGCCTTGCCCCCTGTT	ref_829_RC	47	38	37	39	63	40	56	37	46	46
CGTACGGCCTTGGAGC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GCAAGGGCCGTATGAC	ref_829_RC	37	49	28	27	44	28	46	15	69	26
CGCCCACCCGCTGTCG	ref_829_RC	7	19	12	9	22	14	13	6	10	11
CACGGGTCCAGCCTAG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TCCGTGGCATAACTGC	ref_829_RC	4	31	4	13	20	9	19	6	24	9
GGAAAAGGCTCAGGTT	ref_829_RC	10	7	13	6	14	13	20	11	17	8
CGTGCTAGCCGTTGTG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CACTGAGCTCAATTTA	ref_829_RC	61	68	67	57	64	46	84	57	85	43
CAACTTCGGGTGAAGA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GCCGGACCCAGCCATG	ref_829_RC	2	5	0	2	4	2	2	1	14	1
AACCTTTGCCGGGTTA	ref_829_RC	1	1	1	3	2	8	0	2	7	0
GACATATGTATAGGCA	ref_829_RC	25	44	31	27	42	22	28	34	40	24
GAAGGTTATGAACCTC	ref_829_RC	15	17	15	16	17	15	22	11	24	14
ATGTTGGCACCCTACG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TGCATGGATGCTATTC	ref_829_RC	12	12	14	7	13	9	10	5	7	10
AATTTTTGACGCTCTC	ref_829_RC	13	20	14	10	24	22	37	19	25	13
GGGTTAGGTAGGATAT	ref_829_RC	33	54	39	29	57	33	53	34	67	35
GTCCTTGTCATACATA	ref_829_RC	4	2	2	5	5	2	2	1	4	1
GCTTATTTGACGAAAG	ref_829_RC	22	33	29	31	38	24	31	24	29	20
TGGCTTCTTTGTATCA	ref_829_RC	19	22	26	18	18	22	28	12	32	20
GTATCCTCCCCATCTA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CGTTAGTTGGCTTCTA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
AATCCACCCCGGACGG	ref_829_RC	14	14	9	15	18	12	17	9	10	14
TTCGGATACGGCGTGT	ref_829_RC	27	27	28	23	25	30	30	18	33	20
CTTATGCCGTCGCTCG	ref_829_RC	6	11	10	11	11	7	9	9	10	7
ATCTCTGTTCCTGCGT	ref_829_RC	16	17	33	31	31	12	28	29	26	25
AACATCTTTTTTGGAT	ref_829_RC	30	24	23	27	27	20	41	18	41	17
AAGCTGATAGGCAACC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
ATTCGGATGCACCTGA	ref_829_RC	5	16	12	13	18	8	12	4	9	4
AATGTTTTGAACGTGT	ref_829_RC	18	36	21	13	31	28	43	15	27	14
CTAAGCATTAGCTGCC	ref_829_RC	34	36	38	45	52	37	45	32	59	24
TCCTCGCGTGATACAT	ref_829_RC	5	9	11	11	8	15	13	6	15	9
ATGTCGACCGCAACAG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TCTCCTTCTACTTATA	ref_829_RC	0	1	2	0	1	1	3	1	4	0
TTACTTGTTAGCTGTA	ref_829_RC	45	33	29	25	46	38	31	26	47	28
TTGCGACGTCTTGCCT	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TCTCTTCTTAGCCCAG	ref_829_RC	19	25	27	21	33	14	21	17	20	18
CCCCTGTCATTGCTTG	ref_829_RC	20	41	38	12	30	14	45	12	38	18
CGACCGTTTCGACTAC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GATGACAACTACTATG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TTCATGTTCGCAGCCT	ref_829_RC	37	51	42	37	43	34	41	31	50	30
TTCTGAACTGTACCTG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GATAGGGTCCTGCTCC	ref_829_RC	4	3	2	2	2	4	4	8	6	1
TTTTCCGTCGCGCTTT	ref_829_RC	36	50	31	32	50	17	44	21	32	39
CGCAACATCGGTCTAA	ref_829_RC	27	23	32	33	26	25	25	10	30	22
GCCTTTTGGCATTCGG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TACTTTTGCGTTCCCT	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TACTCGATTACCGGTC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CTGATGTACCTGCTTA	ref_829_RC	28	29	21	24	34	19	35	21	29	16
TATCATTACTTTGGCT	ref_829_RC	3	7	10	9	20	8	10	5	23	7
GGCGTGCTCGACACTT	ref_829_RC	31	52	49	41	45	29	48	29	50	34
CACTACTATGTCTTGA	ref_829_RC	162	218	207	171	244	172	235	168	234	139
TCTAACCCCGGGACTT	ref_829_RC	21	34	40	21	49	19	40	24	31	26
ACTTCCCTCGGCTCAA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GGCGCTGTTCCCAAAG	ref_829_RC	32	25	20	37	25	23	28	17	29	22
ATAGTAGGTCGGCATA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
AGGCTCTCCGATATGA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TCGCAACACTCAACAC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
AGTAGCCACCTTAGGT	ref_829_RC	63	82	72	62	93	56	118	51	96	51
ACTTAAGGTTACAGTA	ref_829_RC	10	16	13	18	36	14	32	17	37	15
TGCTGGTAGCCCTGAC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
GTTGCTACGGGCTAGG	ref_829_RC	14	25	14	22	33	22	24	14	15	15
TGCCAGTAGTAATTCT	ref_829_RC	1	3	3	0	3	2	4	1	2	0
TCTTTTTGTCTGTTGA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
AGATATGCTTAATTAA	ref_829_RC	49	54	40	35	52	58	64	37	51	27
TTAGATATCTCACGCT	ref_829_RC	12	14	11	6	14	6	7	5	13	2
TGTTAACTTCCTTTAT	ref_829_RC	18	33	24	11	31	30	28	24	21	20
GAGATATGACTGTTGC	ref_829_RC	119	182	152	150	188	135	160	117	186	131
GGCCGAAGTTCGTTTT	ref_829_RC	21	14	18	12	22	11	18	16	16	11
TTGTAGCTTGATGGGA	ref_829_RC	94	85	103	92	108	85	103	78	110	48
CACAATTGCCTTGATG	ref_829_RC	36	60	54	41	60	39	55	51	81	52
ATGATGTGCGCTATAT	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CGGCGTTGGGAGCTGA	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CCGGTAGCAACAGATT	ref_829_RC	5	14	0	1	6	1	8	2	17	5
TGTCGATCTAACCTTA	ref_829_RC	37	68	74	88	79	81	110	73	85	67
TAAACTCTAGTAGTTT	ref_829_RC	88	106	85	82	114	74	105	86	111	91
GAGGGCAAACTACTTA	ref_829_RC	8	9	4	10	15	7	16	3	12	5
CTGTTATAGCTCGAAC	ref_829_RC	61	74	73	60	82	40	92	59	107	33
CCGAACCTACCGCCTC	ref_829_RC	0	0	0	0	0	0	0	0	0	0
CTGTTTCATTTCCTAG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
ATCTCGGCCCGGGCTT	ref_829_RC	23	18	22	26	18	19	26	21	24	21
GGCACACTCCATTTCG	ref_829_RC	0	0	0	0	0	0	0	0	0	0
TAAGCCACGTAAGCTC	alt_5639_new	28	13	59	38	22	36	18	36	20	38
AACCCACCAAGCAAAT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TGGGAATTTTTTAGTC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
AGTGCAACAGGATGTC	alt_5639_new	19	4	36	18	8	22	10	18	10	17
GCCTGTTTGTTCGGCT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
AATTGCCGTTGCCTCA	alt_5639_new	174	65	222	172	60	145	62	148	77	142
AATAAATAGTGCCCCT	alt_5639_new	109	34	151	148	48	105	45	108	37	96
CCTGAAACTGCTGAAG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CTGTGTGGTCGAAGTC	alt_5639_new	32	14	41	31	24	25	13	42	13	28
TCAAGTTCATGAGTCT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CAGAATTTCGATTTCC	alt_5639_new	19	6	12	24	12	16	2	14	1	5
ATCTTGGTTGGACCTT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TCTCGCTTCTGTGCTC	alt_5639_new	53	22	44	42	27	36	25	43	27	42
CCCGTTGAACGCTTCG	ref_5639_new	126	46	127	139	60	93	46	112	61	110
ATCGAGTTCCACTTTA	alt_5639_new	159	73	188	183	69	143	78	123	73	122
AATGTATTTTACTGCA	alt_5639_new	17	10	40	20	11	25	14	15	15	12
CTGAGTAGCCTTATTC	alt_5639_new	78	26	115	79	46	66	38	77	29	80
TCCTGGGAACAACTTG	alt_5639_new	27	29	44	53	23	31	15	25	12	46
AAAGTTGGGTCAAATT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GATCAATCGCACTCTA	alt_5639_new	186	76	228	186	96	130	82	149	74	139
TGTCTTAGATAAAGAT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TGCGTCAAGGCGAGGT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CGCAGTCCACCGTTTC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TCTGTCCGCCCATGCG	alt_5639_new	124	66	203	158	62	124	69	128	57	131
CTGGTCGGGTTTTATT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GCGTCCTTAAATGTGA	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GGGAGGCAATCTGTAG	alt_5639_new	66	42	81	88	29	85	40	91	40	78
CCGGAAATGTGCCTTC	alt_5639_new	7	14	19	16	17	15	9	9	12	7
TCCGTAGAAGCTGCTT	ref_5639_new	663	247	836	771	266	640	283	687	269	611
GAGCCTATTGCAAATA	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ACGATTTCTTTTTTGC	alt_5639_new	51	21	65	69	7	51	17	38	12	59
CCAATGTTATCGTCGG	alt_5639_new	224	118	273	276	133	236	132	276	145	199
AGCGCTCTCGGTGGGC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CACTGGATGCATCGCC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GGGCATGTGTTGTGTT	alt_5639_new	109	35	117	110	43	105	33	81	42	95
GTGGTGACTGGAGAAG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ATGCAGCCTCTGCAGG	alt_5639_new	60	20	98	72	21	47	28	64	40	53
GCTTGGATCAGCAATA	alt_5639_new	200	74	264	231	85	187	87	203	72	167
CCGAAGTAATTGTCCT	alt_5639_new	87	32	97	91	48	72	36	80	42	85
CGCCCGACTTTCAATC	alt_5639_new	38	12	46	25	25	38	17	38	17	39
TTACGTCCTTTCTGCG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TGCTTTTTAGACGGAT	alt_5639_new	55	15	45	27	16	26	12	34	20	25
CACATGGTAGTCGTCC	alt_5639_new	199	67	230	205	74	166	77	174	74	169
TCTACATCTCGTCTAG	alt_5639_new	66	25	75	54	20	67	31	43	31	48
ATTGATTATTACCGGC	alt_5639_new	4	3	5	5	8	14	3	6	2	2
TCAATATGACGTTACT	alt_5639_new	54	17	72	41	24	52	6	61	31	36
GCTTCAATGCAGGCCG	alt_5639_new	45	13	53	34	18	30	17	26	22	34
GGGCACTATTGCATTT	ref_5639_new	260	106	326	295	103	217	132	282	109	258
AGGAACTCCGTTTGCG	alt_5639_new	10	3	17	25	6	15	7	15	3	20
ATGGCTAGGTCAGTTC	alt_5639_new	53	18	52	57	14	35	15	52	16	35
GATAGGTTGCCACGAT	alt_5639_new	83	37	74	67	33	70	29	47	30	74
CAGGAGTGCCACGTTA	alt_5639_new	77	33	107	120	45	86	47	113	59	92
GGTGTTTTTCGCGTTC	alt_5639_new	70	25	103	75	34	61	33	72	44	53
ACACGTCCCTTGTTTA	alt_5639_new	8	1	4	4	5	5	7	1	1	3
GATCCCAGCTCTATCC	alt_5639_new	34	15	42	49	16	37	11	28	21	24
TACTGCCGCAGTCATG	alt_5639_new	131	57	179	151	59	122	60	113	79	147
TGATATGACGTTAGGT	alt_5639_new	26	15	33	42	10	43	19	20	12	27
TCTAATATTATACAAG	alt_5639_new	31	17	38	32	18	21	23	32	11	25
ATATTGAGATAGGGTG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CACTGGCTCAGATTCC	alt_5639_new	93	55	119	77	50	83	51	98	45	88
TTAGGGATCGTATCGT	alt_5639_new	79	46	113	77	38	81	45	84	39	59
AAGGAGACCGGTAAGT	alt_5639_new	91	30	98	94	16	81	44	83	22	87
CTTGCAGCCTTTGTGT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GTGTGGCACCCTACTC	alt_5639_new	59	28	80	79	24	66	24	59	28	67
TCCCTAGGTCCCGAAC	alt_5639_new	113	46	152	129	53	105	61	122	43	97
CCTGCTAAAGCTCTGC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CAATTGCGTTGCCTCT	alt_5639_new	46	7	43	25	9	28	14	37	9	28
CGGTTCTAAGTTCCCT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TTCTCTTTGCCCTATG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
AAGGGTTGGAACATCC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CTTACGCTGGCTACAC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ATTGGGCTCCGTTTCC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GAGCGGCGGTAGGCTG	alt_5639_new	135	42	154	138	48	97	55	93	31	120
GTACCCGCATTTTATT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ATTGTATATTGAATCC	alt_5639_new	129	61	166	155	54	150	69	127	54	123
TCATCTGTTCTGATGT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
CCAAATTAATTTGTCG	alt_5639_new	76	30	104	74	36	80	44	74	41	66
GCTCTAAGATGGTTAT	alt_5639_new	46	20	51	48	21	23	18	36	8	20
CCAACTCACTTCTATC	alt_5639_new	22	26	32	28	28	14	39	25	20	26
CGAACTCTTTGTCCGC	alt_5639_new	187	79	285	291	94	227	101	237	103	186
ATCGCGCTGCTTTGTT	alt_5639_new	25	12	38	21	12	19	11	22	9	25
TTTGAATCAATCACAT	alt_5639_new	107	46	151	124	42	114	43	103	48	90
TACGATTTGGACTCTC	alt_5639_new	188	72	188	205	78	176	74	223	84	160
TTCTACTGACCTCGCG	alt_5639_new	70	22	87	59	25	49	24	58	24	45
GTAACCTGTTGACGCG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GAGGGCACGTGTAGGA	alt_5639_new	114	39	120	122	50	83	47	113	44	104
TCAATCGGAGTCCAGT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
AATACACCGCGAACCC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TTCCTTTGGCTCCACT	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TTCCTAGATAGGATGG	alt_5639_new	31	12	53	34	11	39	23	33	15	27
TTTTTTAGCGCTATGG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ACCGTGACACGTACTT	alt_5639_new	144	90	153	175	96	124	98	150	86	139
TCGGATGTTCGTAATA	alt_5639_new	58	26	75	50	20	40	20	54	32	54
AATGTTCTATTACCAG	alt_5639_new	12	8	27	18	11	10	9	20	6	17
CCTTGTCTGTATTTCA	alt_5639_new	90	31	96	107	12	83	22	77	39	65
CAGGCTACGATCACCC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GGATGCTCTTTTCTGC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ATGTCACATCCTGGTC	alt_5639_new	76	40	93	68	19	79	38	62	42	68
TAAACTTCGTTCTCCG	alt_5639_new	30	9	23	24	12	15	8	21	8	12
AGTGTGTCAATTGGCG	alt_5639_new	167	59	147	162	75	153	67	148	65	134
ACGAGATGTGCGGCCC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ATCTGGCTTTAGTCAT	alt_5639_new	161	78	169	171	91	177	68	200	88	142
GTGGGGTGCACCCTTG	alt_5639_new	40	27	60	64	28	69	10	46	24	44
GTCACGTTAAGGGGAG	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TATGAGGTCGCACATA	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TGTCCAATCTTATGAC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
AATCAGTGTCGGCCTT	alt_5639_new	44	13	41	44	13	36	16	35	19	33
TGTCTCATAGGGCCTA	alt_5639_new	0	0	0	0	0	0	0	0	0	0
GACGCTTTCTTTACTT	ref_5639_new	0	0	0	0	0	0	0	0	0	0
GCCCAGTTCTGCGATT	alt_5639_new	41	20	57	65	26	61	22	47	30	47
CGTTATTTTAAATGAC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
ATACGGGTCTTCGTTT	alt_5639_new	122	41	114	115	53	107	61	106	44	95
CCCCGTTTTGACATTA	alt_5639_new	43	26	51	45	49	52	47	36	56	45
TCGGGTCAACCCGTTC	alt_5639_new	121	63	115	98	60	126	59	110	52	96
TCTAGACCTCATGCCC	alt_5639_new	0	0	0	0	0	0	0	0	0	0
TTAATCAGCTGTAATG	alt_5639_new	14	4	9	9	2	6	4	6	4	11
GGTTTGTGGCACTGCA	alt_5639_new	23	13	45	55	25	29	20	48	17	31
CTTGAACATTTTTTCC	alt_5639_new	165	36	180	169	44	139	54	127	43	108
GCCTAATGTATTTCCC	alt_5639_new	221	97	230	245	74	221	99	219	86	168
TTGCTTTATCCTTTAT	alt_5639_new	83	39	98	64	28	73	32	86	50	74
TATGTGATGGACAACG	alt_5639_new	36	6	39	46	11	24	14	48	16	38
ATATCTATTTACGGAC	alt_5639_new	82	44	124	106	41	98	50	96	51	80
GTAAACTTAACTAATC	ref_1617_fdr	155	145	172	121	170	137	191	132	182	115
GCGTCACTGATTCATA	ref_1617_fdr	7	9	2	2	5	7	5	6	5	3
AATGCGAAGTGGACTT	ref_1617_fdr	49	82	71	61	77	63	65	54	76	48
GCTCTCAATTGGAAGT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGTGAGTCAAGCA	alt_1617_fdr	69	96	72	57	81	54	102	57	107	56
CTGTTGTCCTCAGACA	ref_1617_fdr	43	48	30	35	58	32	48	24	54	44
CGCCTATTTCTTTTCT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGCTGTGGACGGA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTACTGTCGTTCCCTA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTCATAGACTATC	ref_1617_fdr	14	36	24	18	43	13	22	11	28	19
CTATCGATTGCATTAT	ref_1617_fdr	59	64	55	63	89	61	77	61	73	56
CCCCCGTTCTAGCTTC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TAGATGTCGTGTTGCC	ref_1617_fdr	32	30	37	30	37	32	48	42	46	22
CGAATACAGGTTTTAC	ref_1617_fdr	21	34	13	27	25	17	26	9	28	14
TGCAATCTTGGTTATT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTGTATCCAATTG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTTATTATAATTT	ref_1617_fdr	19	23	22	23	26	15	21	18	28	11
GCTAAGGCGTTGGCTA	ref_1617_fdr	12	24	9	22	20	12	18	10	19	11
CGACCGAAGTGTATCT	ref_1617_fdr	19	23	13	16	20	17	20	9	21	15
GGTCCGAGGATTTGCT	ref_1617_fdr	16	10	9	13	7	12	18	8	9	9
TGATTTATCTAATCAC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTCAAACCATCTTTTC	ref_1617_fdr	9	7	16	12	11	9	13	9	16	9
GTCTAGATTATAGGTG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GACAAACTAGCGTTTG	ref_1617_fdr	97	133	127	100	149	92	118	95	143	114
GGACAGGTAGTCCCAA	ref_1617_fdr	11	18	19	17	18	16	23	14	12	8
TAAAGACGTAGTATCA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGCAAGTAAGGAT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CATCATCCCATGAATA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCATACTCGCCTCTCG	ref_1617_fdr	9	18	14	15	12	12	13	9	25	11
CGTAGCACTTTTATTT	ref_1617_fdr	10	23	31	18	33	14	50	17	22	11
ACAGCCGGTCCAGACC	ref_1617_fdr	3	2	0	1	7	1	3	2	2	0
GCTTTGCTGATTGGTA	ref_1617_fdr	54	56	47	44	52	32	51	46	57	27
ACGTGTTAATACAGGC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTGAACGTGAACC	ref_1617_fdr	8	12	9	11	9	8	19	9	22	14
CGCTCGTATTGGTAAC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTCCAGTACTGAA	ref_1617_fdr	6	4	9	7	15	6	15	12	8	10
GGGAGGACAGTTTCAG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCATCGGTCCCAGCCA	ref_1617_fdr	31	32	26	41	43	33	41	23	37	31
TCTGGTCTCTCGTTAT	ref_1617_fdr	68	108	75	54	103	60	112	57	113	47
CAAAGTTAACTTGATA	ref_1617_fdr	4	2	4	4	0	0	0	0	2	1
TTGTTTCGAACTTATT	ref_1617_fdr	33	55	31	31	33	39	35	26	39	29
TGATACTCGCGTTTTC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCCGTAGCACGTA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TGACGGAGGTTGTACG	ref_1617_fdr	15	26	23	22	23	9	23	22	23	17
CTTTACGTCTCTCCTG	ref_1617_fdr	6	18	13	9	20	7	10	11	24	9
AAGCTTCACTTTTGAT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GGCTATTGTCTCGACC	ref_1617_fdr	13	8	17	10	20	9	22	13	21	17
CCTTTCTTTTATTATG	ref_1617_fdr	38	44	33	38	43	42	48	48	37	36
GTGCTACATTTACTCT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGGCTTGATCTCT	ref_1617_fdr	19	23	30	21	27	19	30	29	29	21
CTGAGTGCGTGTTCTA	ref_1617_fdr	4	7	4	2	1	3	3	7	4	3
GTCAGGAACTCAACTT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCAAGGGACTACT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CCACTCGATGAGGCGG	ref_1617_fdr	40	35	32	35	55	33	42	34	56	58
CGAACGGTTATTGTGT	ref_1617_fdr	24	23	25	24	27	20	29	22	20	23
TGGCGAGCCGCGACCA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCTGACTATTGAG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
AAATTTAACGTCGTGT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
ACATCTGTAGCCTGTC	ref_1617_fdr	57	79	75	63	79	54	73	60	72	37
TAATTTTTTCCCCCGT	ref_1617_fdr	28	70	41	40	54	30	57	24	87	30
GAACCTGCCCTGATGC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTTGGGCCTAATG	ref_1617_fdr	15	12	11	3	7	10	7	9	6	16
TGTTCCGCCTGCTCTG	ref_1617_fdr	19	17	15	10	18	14	21	17	22	8
CCGCTTTTTTAAATCT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAGACTCCTAGTC	ref_1617_fdr	11	15	14	8	11	5	11	8	21	8
GTAGGTACGTAAACGA	ref_1617_fdr	5	8	8	7	6	5	5	2	2	6
TACGTGTGATTTACCT	ref_1617_fdr	8	13	6	5	4	2	8	6	15	13
TGAGGTGACTTGGGAT	ref_1617_fdr	12	5	14	9	11	4	14	9	12	5
TTGGTGTACGTTGTTT	ref_1617_fdr	8	15	7	12	19	7	10	9	20	9
GCTGTGTTTTGAATAG	ref_1617_fdr	23	16	13	18	18	8	20	16	32	11
ACGTTTATATCTCGTG	ref_1617_fdr	8	12	8	10	8	9	17	6	10	11
GTTCTTTTGGACATTC	ref_1617_fdr	23	11	19	16	18	16	22	16	19	12
GTTAACGTGGTCGTAC	ref_1617_fdr	2	2	2	5	5	2	2	2	5	3
TGTGGAACTCGCTGTT	ref_1617_fdr	0	3	0	4	5	2	2	4	0	2
TCCGGACTATTTTCTG	ref_1617_fdr	14	14	15	10	23	6	19	14	29	15
TCTTTACAGGAGTAGT	ref_1617_fdr	55	47	50	46	46	33	60	50	87	35
TTTTCCTCCTATGCAG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCTGTTGTTATT	ref_1617_fdr	10	7	2	6	5	6	7	3	6	4
TTGAGTTTTGTTTCGG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GAGTGAAACTCTTCCA	ref_1617_fdr	19	38	28	30	31	23	28	26	29	28
GTAATCCCGTCTGTAC	ref_1617_fdr	6	9	9	9	15	4	7	7	11	7
ACGTGAGCATGCAGCG	ref_1617_fdr	217	209	262	232	247	200	244	263	254	208
ATCCCCGCACACACTC	ref_1617_fdr	41	64	45	31	39	37	76	34	50	41
TACGATCTAGAACAGT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCGTTCAAGGCCC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GGACAAGATGCACTAT	ref_1617_fdr	16	19	21	14	18	17	12	12	26	11
GCGCCTTGCTGCTCTA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CATGGATTCCTCGGAT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGGGTCATCGAC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTGAGCTCGGCTG	ref_1617_fdr	23	14	22	10	17	13	15	20	16	14
TAGTCTTTGAGACAAA	ref_1617_fdr	12	17	11	18	19	7	15	8	23	6
GATAAACGCCCGAGTT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATACAAAACGTGAACC	ref_1617_fdr	27	37	33	38	35	27	35	27	48	24
GGGATTGGCTTATACG	ref_1617_fdr	7	12	6	9	4	9	5	9	13	8
CACCCGATTTTTGTTA	ref_1617_fdr	5	11	2	5	7	2	5	2	12	7
ATCCGTTCAGGTCTAA	ref_1617_fdr	13	10	14	17	11	7	11	11	24	5
CTGAGAAACCCGTTCT	ref_1617_fdr	29	43	40	40	34	18	33	27	33	20
TAACCCTTAGGGATCT	ref_1617_fdr	8	16	6	10	5	2	8	5	9	7
CGAGTGGATAGATACA	ref_1617_fdr	71	110	100	88	88	82	114	73	109	60
TCAGTGTCTATTCGCG	ref_1617_fdr	5	10	14	13	13	6	20	11	18	6
TTGAGCTTTGTGTCTG	ref_1617_fdr	14	17	13	11	16	5	21	2	23	13
CTTGACTCTTAGTTGT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
ACCACATAGGTAAGGG	ref_1617_fdr	45	48	59	47	38	29	45	37	60	39
CATTACAGTTTCATTA	ref_1617_fdr	49	49	62	65	72	50	68	40	62	46
TTATTCAGGAGCCTCC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGCAGCTGTATGCTGT	ref_1617_fdr	20	30	38	28	38	26	35	18	41	23
CCGCAAACGGTTCCTA	ref_1617_fdr	140	165	169	127	177	107	199	113	179	116
TTTCGGATTCTAGAAC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGGACAAAGGTTC	alt_1617_fdr	65	64	86	81	60	65	59	60	54	54
GAATGGTAACAACGGC	ref_1617_fdr	11	18	16	10	19	9	15	13	20	17
AATAGTGGTGCAGATT	ref_1617_fdr	153	185	204	213	156	150	219	152	222	202
ATTGTACTTCGCATTG	ref_1617_fdr	17	15	16	13	3	11	21	4	19	9
CTACTGATTTTTCCTT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TGTACTCTTTTTCCGG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTATGGAGGAATGTGA	ref_1617_fdr	49	53	42	42	45	41	47	46	67	26
AACTGACGGTTTGGGT	ref_1617_fdr	44	40	49	44	36	30	51	48	51	28
TTTCTTAGTTCCAGAC	ref_1617_fdr	11	17	13	6	14	13	15	12	16	7
GCGTTCACGCGATCGG	ref_1617_fdr	12	5	12	17	13	18	8	10	18	14
TGTGCGCAAGTATCTT	ref_1617_fdr	30	44	51	37	42	37	53	31	63	42
CTAACCCAGCGCAAAT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTTGGCTTTTCTT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAACCTTGTATAG	ref_1617_fdr	5	1	6	6	6	1	2	2	3	3
ACCGTATGTCTGTGGT	ref_1617_fdr	2	8	8	4	10	6	9	10	10	7
GCAGCCAATGATACAG	ref_1617_fdr	9	20	13	8	13	7	20	8	15	7
GCTAAACAAGTACGAC	ref_1617_fdr	8	14	8	7	9	6	11	2	12	7
GCGTCTCGTATAGTAA	ref_1617_fdr	32	48	50	37	39	30	48	38	41	33
CTATAACCTTACATTC	ref_1617_fdr	6	35	19	20	21	22	31	24	30	17
CATCTGTTGGCAAACA	ref_1617_fdr	12	9	25	18	14	11	14	12	16	9
TCAAGTATAATGTCAT	ref_1617_fdr	36	32	32	42	46	31	47	26	42	30
TTGGCTGCGTACCGAT	ref_1617_fdr	22	22	33	25	18	19	25	28	24	22
TGCAGCTGGGCAGCGA	ref_1617_fdr	16	16	24	22	32	28	38	11	32	15
CTGGACATCTGGATAT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GAGTAGTTTTACGCTA	ref_1617_fdr	68	82	79	59	106	67	87	66	87	56
GTTCTGTCATTCTCGG	ref_1617_fdr	6	20	21	16	27	18	15	11	28	13
GATTCCCGTCCTGTTA	ref_1617_fdr	27	27	35	13	25	22	30	25	20	26
TACTCGGTTTGGGATT	ref_1617_fdr	5	11	5	9	4	7	5	4	4	3
TTCGCCCTTCGGTTTA	ref_1617_fdr	19	36	25	21	29	20	21	29	19	21
AGCGCCATAGCGTAGT	ref_1617_fdr	13	25	17	8	17	14	19	17	10	11
TGCTTACGTACGCGCA	ref_1617_fdr	51	60	61	39	68	39	62	39	53	46
GTAAACTTCTGTTCTT	ref_1617_fdr	25	34	26	20	29	15	23	25	21	24
TAAGCTTGTTGAGCTG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTAACAGCCTTAGGAG	ref_1617_fdr	43	67	32	35	42	24	51	47	72	33
CATCTAAAATTCCGTG	ref_1617_fdr	16	23	6	5	12	3	7	9	22	18
TTGACATGCAGAATTT	ref_1617_fdr	48	81	78	51	72	59	85	51	87	64
GCTATACTGGTTACAA	ref_1617_fdr	6	9	9	10	11	3	17	15	6	9
AGATAACATCTCACCG	ref_1617_fdr	4	3	2	6	3	3	8	7	4	6
CCAAATTACTGCGCGC	ref_1617_fdr	38	97	57	43	85	54	76	46	81	37
CATACCAGCAACGAGG	ref_1617_fdr	7	17	17	13	8	4	23	9	13	4
ATACCATCTATGGCCG	ref_1617_fdr	4	0	6	3	3	4	3	3	6	2
TCGACTGTACAAGCTC	ref_1617_fdr	39	59	62	53	53	38	57	61	49	44
CAATGGCATATGTCTT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGCAGCTAAGCTAATA	ref_1617_fdr	14	29	18	5	18	11	15	13	21	11
TGTAGACATGCCAGCA	ref_1617_fdr	34	45	31	41	30	31	21	26	31	36
GACAGCGTGACTGTAC	ref_1617_fdr	12	9	13	8	18	8	14	3	14	6
AGCAGCAGGAGAGGTT	ref_1617_fdr	7	12	10	10	12	10	18	8	11	10
GTCAGTTCGTTTCTCG	ref_1617_fdr	21	28	18	19	34	15	25	17	32	18
ACTTACCGGGTTTTTA	ref_1617_fdr	1	15	2	0	24	3	27	5	22	5
TTTCCACGCTAGTTGC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TATTGCGTTTCTGACG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TGCACGTAGTTACGCA	ref_1617_fdr	2	2	8	1	3	1	3	0	2	2
GATACCAGGGTTGATT	ref_1617_fdr	5	13	8	8	17	7	15	11	10	11
GCACCATGTGTTAAAC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCACTGCTTCTGTATC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTATTACCGATCTTCG	ref_1617_fdr	20	20	24	26	19	25	24	12	22	17
CACTTTGGTAACATGA	ref_1617_fdr	105	142	158	126	143	113	141	112	146	120
TTACGAGTCTGAGGTC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTCAGTCGTTACT	ref_1617_fdr	16	26	26	25	17	22	21	20	32	23
TACGGTGTGTGTAACA	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGCTATTACATTT	ref_1617_fdr	29	44	34	29	35	25	58	36	51	30
TCTATATTTTCGTTCA	ref_1617_fdr	6	9	20	7	11	14	11	8	7	11
GCGGTGGTTTACATTT	ref_1617_fdr	50	46	53	34	50	24	37	26	59	34
TGAGTTAAATGGGTCT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGCCCGCGCACCC	ref_1617_fdr	10	9	9	17	11	14	8	8	15	8
GCCCCACTTGATTGCT	ref_1617_fdr	13	13	15	26	23	16	14	19	23	13
ATATCTTCTCTGTGCT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAAAGATACTCCC	ref_1617_fdr	3	5	2	4	6	5	10	4	9	7
GAGTTGCAGATGCATC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGGAGAAAGCATT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
CCCCTATCTGTTCCGC	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GCATTTTACCCGCCAT	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTGTATTAGCTTG	ref_1617_fdr	0	0	0	0	0	0	0	0	0	0
GCTTGAATTTAACTTT	ref_1617_fdr	8	6	9	5	6	6	9	8	15	4
TTAGGTCCTGGGTAAC	ref_1617_fdr	20	32	22	18	36	18	32	17	36	25
CTTTTGAGCGATTTGT	ref_1617_fdr	4	12	2	2	8	2	2	1	9	4
TTTTTCTAAAGCCGGG	ref_1617_fdr	25	38	33	22	26	15	33	27	42	11
TTGGAATTGCGCCTTT	ref_1617_fdr	10	19	18	13	15	19	20	12	23	13
TCACGTGCCCCTACTG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
AGGACGGTAGCGGCAT	alt_5650_new	2	6	5	2	4	4	4	1	5	2
AACGGTTTTTTGGGTG	alt_5650_new	31	56	34	29	59	17	78	11	54	17
AGGCGAGTGAGGTTTT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TGCTAGCTCTCAGCCA	alt_5650_new	12	12	6	8	14	6	10	8	21	1
CGATCTACATTACAGC	alt_5650_new	45	74	41	51	62	45	85	45	61	34
TGTTGCACGTGCACCT	alt_5650_new	2	4	2	1	10	3	8	5	6	3
AATTTGCTTTGCTTCC	alt_5650_new	51	79	74	49	94	47	82	53	89	37
AATATCTAGTCGCAAC	alt_5650_new	3	5	9	3	8	3	2	3	11	0
GTAATGCTTATCGGGA	alt_5650_new	55	104	69	64	93	49	130	57	148	48
TACTAAGACAGTGCTC	alt_5650_new	73	159	83	80	121	88	173	62	159	57
AGTTAGTGCTTTATTT	alt_5650_new	0	7	8	2	2	1	1	2	5	1
CAGTACTCCTGCCCTA	alt_5650_new	5	2	0	3	8	7	8	2	4	1
ACTTGTTAACTTCGGC	alt_5650_new	34	54	43	26	46	25	51	35	52	26
GGTCGGTACTCTTGTC	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TCCGGTTAATGTACCT	alt_5650_new	32	63	25	26	56	23	79	19	63	29
CATTCGGTACATCGCC	ref_5650_new	12	19	14	15	24	6	18	9	21	12
CGCCTGCTATGTTCGA	alt_5650_new	18	24	22	23	21	14	40	19	40	20
TTGGGACCCTGGTCGT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
AATGAGCGGGTAGTCC	alt_5650_new	1	3	2	3	4	1	2	0	6	3
TATGCACTTACGGTCT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TGGGATGTGTCACCTC	alt_5650_new	0	0	0	0	0	0	0	0	0	0
AGGAATCATCGTGCTA	alt_5650_new	0	0	0	0	0	0	0	0	0	0
GTCGCGGTTAATTTCG	alt_5650_new	2	4	3	3	1	0	3	0	0	2
AAGGTCTCCGTAACAG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
GTTCCCAAAGACCCCC	alt_5650_new	0	0	0	0	0	0	0	0	0	0
GATTATTCGGTCCCAT	alt_5650_new	7	24	13	13	26	14	27	9	22	20
TCATGGTCTTATACCT	alt_5650_new	7	19	20	18	15	8	19	8	26	7
CGTTATCACGGTATTT	ref_5650_new	126	216	148	120	255	113	249	107	252	107
CCTTGTGTGGCTAGGT	alt_5650_new	6	11	8	9	11	12	31	6	19	6
ATTACCGGACATCTTT	alt_5650_new	10	11	11	7	21	4	14	10	14	5
GACAGACCTGAGATTT	ref_5650_new	11	18	33	19	43	20	42	22	35	11
TCATTTATTGCGCGAT	alt_5650_new	36	78	66	32	84	39	80	29	71	30
TTCTCCGTATGTATGC	alt_5650_new	5	24	3	5	22	4	20	4	18	11
TTAGATCTCCTTGGCG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CCGTCATTGACTGTTC	alt_5650_new	0	7	2	1	4	2	8	2	6	2
GAATGCGGTGGTTTCC	alt_5650_new	5	13	9	7	11	9	10	12	14	7
GGCTTTAGTCATACAG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TTATGGTTAAATTGGC	alt_5650_new	4	4	3	3	6	2	1	2	4	0
AGTACGCGAGGATGGT	alt_5650_new	6	0	2	1	1	0	1	2	1	0
CGATTCCGTTCTGATG	alt_5650_new	51	62	41	41	75	42	82	32	69	39
TGGTGCGGATATTCTC	alt_5650_new	30	73	37	31	66	35	56	33	58	28
CGTTCGCGAAGCCAGA	alt_5650_new	56	103	67	54	93	47	100	45	122	48
ATACAACTCGGGAAGA	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CATCATCCGCAAACCA	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CGCTGGAGGCTAGCGG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
ATTCGTTGCTTTTGTC	alt_5650_new	2	5	1	1	5	2	5	5	4	2
TAGACGGCTTGTTTCA	alt_5650_new	38	73	37	43	82	38	106	26	93	30
CGAGTGTGTAACGGTA	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TGTTTGCAGGACGGGA	alt_5650_new	21	30	14	25	25	19	30	17	28	17
GGACCAAGAGGGAATT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TTTGTACCCCTATGCG	alt_5650_new	5	17	9	14	22	7	29	7	24	8
CTCAATGATGGTGAAT	alt_5650_new	10	5	3	5	3	4	10	8	10	3
GGAAACCAAGTCTGTG	alt_5650_new	9	40	18	17	38	26	31	18	44	15
TAAGTTATAGTACTTG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TGCTCCTGGATTCGTA	alt_5650_new	13	12	11	9	11	11	21	11	15	2
TGTATTGACTATCATG	alt_5650_new	15	36	19	22	33	16	47	22	30	16
ATGATCCCCATGCGGG	alt_5650_new	17	28	16	13	23	8	28	11	18	16
TTTCTGCGTTGATATA	alt_5650_new	10	14	6	7	14	6	19	6	8	15
TCCTGCACTCCAGCGT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
ATTCTGTATCTGTGAG	alt_5650_new	3	2	1	3	1	1	3	2	2	2
TTGTAGTACCAACGAG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CAAGCAGGCGTGTTCA	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CCCTGTCTGCCGGCCA	alt_5650_new	8	12	5	6	10	1	10	6	10	4
TGTATCTCGCTCCGCC	alt_5650_new	11	19	9	8	17	8	31	18	10	15
TTATTCGAGGTTAAAC	alt_5650_new	7	6	7	4	7	6	12	4	14	5
AGAAAGAATTCGTCGA	alt_5650_new	0	0	0	0	0	0	0	0	0	0
GCGGTGCAGTGAATTA	alt_5650_new	4	10	8	5	17	2	18	7	12	3
GGAGTTCGCCGTAAGT	alt_5650_new	15	25	19	14	33	9	37	12	32	13
TTTTACATTTCTTGTC	alt_5650_new	15	19	15	19	18	15	19	7	21	10
TGGCTGCCTTTCAACA	alt_5650_new	0	0	0	0	0	0	0	0	0	0
ACAGTACCTGTAGTGG	alt_5650_new	2	1	0	4	1	2	4	1	2	0
TTGGGACCCTGGTCTT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
TACATCGTCACTTCCT	alt_5650_new	11	18	11	14	22	13	22	9	21	10
GACACTTTATTATACT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
AATCCTCGGCCAGCTG	alt_5650_new	19	45	26	30	41	20	57	21	44	42
ACGGACGACATGCTTA	alt_5650_new	1	9	2	2	10	1	9	0	12	1
CTTACCTTGGCACGTT	alt_5650_new	1	21	1	2	26	2	24	0	19	0
TTTTATGTTGCGTTGC	alt_5650_new	16	34	25	16	30	17	45	18	29	13
TCCCTGCTATATTATC	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CAGCAAGGCATTTCAG	alt_5650_new	3	12	6	7	10	2	27	2	11	3
ATGGGATGGTCAATAT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CACGCTGCTTGATTTA	alt_5650_new	15	16	17	15	18	9	17	4	17	11
CAGGAATCTAGTTTGG	alt_5650_new	42	99	59	52	79	57	100	59	91	49
CGTCCACTTGACAGGA	alt_5650_new	20	42	16	18	38	16	36	17	40	10
GATTATTATTTGGATA	alt_5650_new	21	40	36	18	41	23	38	24	54	27
GCAAATTCAAGAGTTA	alt_5650_new	12	31	6	14	21	7	21	5	36	8
GCTTACAACGCCTTGT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
GGACAAGGTGTGGAGC	alt_5650_new	0	0	0	0	0	0	0	0	0	0
AAATTTTACGAAAAGG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CACCAGTCGCCTATCT	alt_5650_new	3	30	9	5	26	9	21	16	29	4
GTCTCACCGCGGATGG	ref_5650_new	82	103	88	88	95	66	83	66	96	54
CGATGTTTTAGGCTCT	alt_5650_new	9	10	3	6	7	6	13	5	9	5
TAGACCGGGCTTGACA	alt_5650_new	25	58	31	39	51	19	61	22	55	14
CCGGCCGTCGTGCTGG	alt_5650_new	0	5	1	0	4	2	7	3	3	1
TCGACATAACCTTGGG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
GCCTTTGGATCGTTTG	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CGTATGTAGCGCACGT	alt_5650_new	59	144	70	64	152	45	134	44	128	46
AGCTCATGTTGCATCA	alt_5650_new	15	16	15	12	20	20	36	10	23	8
TAGTTAAATCTGTGTA	alt_5650_new	3	3	3	0	3	2	3	2	3	0
ACCTTCTCGCTTTTTC	alt_5650_new	6	9	13	5	22	7	24	7	22	3
AACGTTTTGGGGTCTC	alt_5650_new	0	0	0	0	0	0	0	0	0	0
CTTCGCCGCACCTGAT	alt_5650_new	0	2	1	1	3	3	8	3	9	1
TTTCTACCCTCTTCCA	alt_5650_new	17	49	27	21	50	14	59	18	41	23
TCCTTGTATCGCCCAA	alt_5650_new	1	2	2	0	4	0	2	2	3	1
CTGGCTTTCTAGTTAT	alt_5650_new	14	39	20	7	30	17	37	24	37	21
GATAGCTGTCCACTAT	alt_5650_new	2	4	6	5	18	4	9	9	12	4
GCGCTGAACATGCGAT	alt_5650_new	0	0	0	0	0	0	0	0	0	0
GGGACGATTCAATTTT	ref_3356_reverse	3	10	10	11	11	11	27	10	14	8
TACAGTTCTTCCATTC	ref_3356_reverse	71	132	110	78	143	66	118	87	134	68
CCCGGGTCGTTAGCCT	ref_3356_reverse	0	2	0	0	0	3	1	1	3	0
CTCACTAGTGCGCATC	ref_3356_reverse	43	58	46	35	52	33	72	35	61	30
TCTACCCTTCAGACTG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTTTTACTTGCCT	ref_3356_reverse	8	23	17	21	19	15	25	10	28	13
CTTAATCCGTATAATG	ref_3356_reverse	6	4	1	6	5	2	8	0	8	0
AGAGCGACTGTCGGAA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AATACTTCCTACCTCG	ref_3356_reverse	142	207	188	130	238	162	245	152	229	145
TCTTTAATGCCTTTTT	ref_3356_reverse	16	14	26	8	10	20	17	13	16	16
CGGGAAGCAATTAATT	ref_3356_reverse	92	122	111	108	130	109	150	97	140	87
AGGCGCGTGGTGTCCA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTCAGTGCACGTA	alt_3356_reverse	184	261	253	210	258	188	277	154	257	185
GAATTGGCACCTTATC	ref_3356_reverse	12	25	27	27	24	12	32	18	31	23
CCCGTAATTGGCTTAC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGCGCGGTGTCATGGC	ref_3356_reverse	12	16	16	14	10	17	18	19	19	14
ACTATGCTCGTTATGC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCTTCACCAGTTT	ref_3356_reverse	48	72	58	51	66	59	57	54	79	49
AATCGCTTTGCTTGTA	ref_3356_reverse	13	26	21	16	21	17	19	17	9	16
ATCCGTAGCTAGTCCT	ref_3356_reverse	1	8	4	3	5	5	5	6	7	4
CAAGCATGTGTAGTAA	ref_3356_reverse	26	44	35	32	33	28	35	31	39	21
GTGGGGATTTTGAGAA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCCCCTATCATTA	ref_3356_reverse	1	6	6	2	3	5	6	2	5	2
ATTACTTTTGGGGCGC	ref_3356_reverse	0	0	1	2	1	1	0	1	1	1
GCGAAGTTTCCAGTAG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCCATCCGGGAAG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CATCAGATAGCGTTGA	ref_3356_reverse	44	47	37	40	50	35	67	34	52	39
GTTAAATTTAAGTTTA	ref_3356_reverse	12	37	36	26	53	18	64	23	54	24
TCTAAACAATAGTAGT	ref_3356_reverse	12	11	5	7	9	10	14	10	12	12
AATGTATCACGCTTCC	ref_3356_reverse	4	4	4	3	6	5	15	2	6	5
GAAAGTAAAGCGTTCA	ref_3356_reverse	4	6	4	2	7	8	9	6	5	4
GTAACGTCAGGGGGCA	alt_3356_reverse	46	72	65	63	77	56	76	61	78	54
GATGGAAATCCCGTTA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTATTCAGGGAGA	ref_3356_reverse	3	6	6	15	9	6	9	9	4	7
TGACATCCCAAGATTT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTGACGACGGGCC	ref_3356_reverse	9	32	28	16	21	29	28	16	29	8
TTTCGTAGCAAATACT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCGTCTAGCCATT	ref_3356_reverse	0	2	0	0	4	0	1	3	2	0
TACTTAGTGACAAGTT	ref_3356_reverse	15	22	18	14	27	19	23	18	40	27
AGCGGAAGTAACCGCT	ref_3356_reverse	24	13	15	16	16	17	18	13	23	9
GCATAGCCATCCCCTT	ref_3356_reverse	14	37	19	21	39	26	33	16	37	20
TTATAGACAATCTTCT	ref_3356_reverse	9	14	17	8	16	18	15	8	15	10
TACTGTCGTCGATGAG	ref_3356_reverse	24	40	33	31	43	30	43	29	58	35
CCCTTTTCCTCGCATG	ref_3356_reverse	22	27	30	13	27	20	19	12	24	15
TGTTCACAATCTTTCT	ref_3356_reverse	55	53	46	48	31	50	44	38	40	35
TCTTCCAGTGTACTTC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGGTATACATTTCCCT	ref_3356_reverse	31	31	31	24	32	28	36	25	51	25
GTGGGTTCATAGCAGG	ref_3356_reverse	27	20	23	23	27	18	29	35	41	21
GTTTCAGAGACTTCTT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GGTATCGATGGATGCA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTGATCGACCGGACTC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GGCAATAAGGTATCCG	ref_3356_reverse	62	102	70	64	80	66	106	63	93	68
CCCGTACATGTTAGGA	ref_3356_reverse	34	37	31	30	45	26	22	24	33	25
TGTTGTGCCATCCAAT	ref_3356_reverse	36	41	30	36	54	29	36	37	34	30
GTATCCCCCACATTCG	ref_3356_reverse	10	10	11	8	10	11	5	9	10	9
GTTCCCCTAGTACCCA	ref_3356_reverse	1	7	8	2	9	5	5	5	8	1
AAGCGTCACTTACACT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGACATATTTGCTCAA	ref_3356_reverse	177	224	177	142	179	172	200	130	211	146
CCACATATTCCCTTTG	ref_3356_reverse	34	35	43	34	49	41	42	36	62	26
TTTCCGTTCAGTACCA	ref_3356_reverse	6	6	3	6	7	3	8	8	7	7
CTGTGCTGGTCTGCAC	ref_3356_reverse	35	40	32	38	34	35	40	33	49	38
AGCTCGCGCCTGTTGT	ref_3356_reverse	2	7	3	3	6	3	2	1	4	2
TTCTTGTCTAAATCGC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GATCCTGCGGTCGGTG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGTGACCGTTACTCTA	alt_3356_reverse	111	115	122	99	120	91	137	96	127	79
ATACATAACTGCCGGG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGATTATCTTACT	ref_3356_reverse	216	230	263	204	239	190	266	191	269	187
GCCATGATTTCCCCGG	ref_3356_reverse	22	25	30	20	27	24	23	14	30	14
ATGGCCCTGCTTAGGT	ref_3356_reverse	25	31	40	23	57	20	37	23	51	31
ACTAACGTGTCGGATT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGATTAGCGCCCGTTT	ref_3356_reverse	54	81	72	67	80	70	73	74	70	45
GTCTTGTGGGAGCATG	ref_3356_reverse	27	25	24	28	37	26	27	18	20	21
TGACCTATACTACATT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGTCCCACAAACT	ref_3356_reverse	60	69	52	48	74	38	67	37	66	41
TGGCCTGGTAAGGAGA	ref_3356_reverse	24	30	25	23	26	22	31	15	30	27
TGTTGACGCTGCTCTC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CGATCTCTATTGCGAC	ref_3356_reverse	19	39	16	17	36	22	30	25	36	20
CCGAAATTCGTTGCAA	ref_3356_reverse	12	24	18	18	17	25	27	22	29	19
GATTAGCCTACCGATC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGATATGCTGTCG	ref_3356_reverse	7	9	3	7	11	3	5	9	10	5
GATTCATAGAGTGCAA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTTTGGCTCAGGT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGATACTATACCCTGC	ref_3356_reverse	35	35	44	31	37	29	45	31	47	34
GGTGGCCAAGTGACGA	ref_3356_reverse	52	49	55	43	43	36	68	40	64	38
ATTCGATCTTGCGACC	ref_3356_reverse	23	19	21	11	18	15	26	9	18	21
CTTTGTTGCATTTGGC	ref_3356_reverse	6	4	4	2	3	3	8	2	7	5
CGTTTGACCGCATAAC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GGGTAAATTCTCTCAG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCTCTTCCGGCAC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CACCCGTCGAAGCGCT	ref_3356_reverse	13	15	9	7	6	11	5	9	15	8
TACAGCGCTAGTGTTT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCCTTCTCATGGA	ref_3356_reverse	8	19	21	20	11	12	20	14	16	9
TTAACATGGGCATTCA	ref_3356_reverse	24	24	22	30	32	19	28	16	27	34
TTGCACGGCCCTAGTA	ref_3356_reverse	25	20	36	32	29	30	36	15	46	22
AACGCTTCATCGCTAA	ref_3356_reverse	117	113	118	86	148	80	148	102	146	94
GCATTTCACTAGGCGT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GACATTTGCATCTTGG	ref_3356_reverse	76	85	69	62	93	70	95	64	75	64
GGGCGGTAATAGGGCG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAATAGTAGAATG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTTGTAGTGTTCA	ref_3356_reverse	37	42	33	32	42	34	44	25	48	37
ATATTCATTTTATATG	ref_3356_reverse	5	5	8	1	5	9	4	2	10	3
GACATTAAATCCTATG	ref_3356_reverse	44	75	51	58	68	55	54	43	75	44
GATGATATGCATGGCT	ref_3356_reverse	31	27	33	22	25	28	27	26	26	20
TCTTCGCATAGCGCTT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCAGTTTTGTATG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CATTCTACTCTTGATG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCCAGGTGGATAC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTTTTTTACTAAA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GAATTAAATGTAATCC	ref_3356_reverse	8	11	7	11	10	2	8	13	11	14
ATCTAGACTAACTTCC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTTAAGGGGTCCGAGC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCTAAAGCTATAGGGG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CGCATTGGTGTGGGCG	ref_3356_reverse	23	35	25	28	36	17	26	23	34	15
CAGTGTGTAGCCTCTG	ref_3356_reverse	22	33	15	17	29	27	37	24	26	23
TTGCCATTTACCAAAT	ref_3356_reverse	10	7	14	15	19	10	8	9	16	7
GTTACTTTCGTTACAC	ref_3356_reverse	15	19	14	27	19	14	26	20	12	8
TCGCTCAGTCGCAGTT	ref_3356_reverse	12	39	9	13	40	19	38	6	47	15
CGTAAGCTTGCGCGAA	ref_3356_reverse	61	63	76	61	70	67	60	51	89	57
TTACGCCGATATTAAT	ref_3356_reverse	32	53	35	42	58	21	55	27	60	32
CGTAGCAGTTACTAAA	ref_3356_reverse	18	11	8	17	18	18	13	19	21	13
TTGAGTTGCTTCTGAT	ref_3356_reverse	10	21	11	11	14	11	22	17	22	11
GGCTGACCGGCATCGT	ref_3356_reverse	20	15	21	15	22	15	26	18	17	19
TATGACGCGCAGATGT	ref_3356_reverse	4	9	12	7	9	5	5	11	10	5
CGTTATCGGTATCAAT	ref_3356_reverse	19	29	30	16	28	19	41	24	27	23
GTCATATTAATTGGAT	ref_3356_reverse	116	163	145	141	189	121	142	120	154	126
TTTAGATAATTTGCGC	ref_3356_reverse	65	106	90	92	94	90	110	64	118	70
GGTATATTCTGATGAT	ref_3356_reverse	112	117	118	94	127	107	120	100	107	106
CTACTCCCCGTGCCCG	ref_3356_reverse	5	55	7	6	66	7	75	5	63	7
ACAGATGATGGCTCGT	ref_3356_reverse	44	47	49	42	46	43	51	42	66	41
ACCAGCTGTCATTTGG	ref_3356_reverse	12	18	14	11	11	15	12	10	18	12
TAAAGTGTTTTGTGTG	ref_3356_reverse	8	17	6	10	11	8	5	8	8	5
TACGATTTACTACAGC	ref_3356_reverse	9	16	11	9	11	6	16	11	11	12
GATGAGTATCTAGAAC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CACTGTGCAATTGGTT	ref_3356_reverse	15	21	25	13	24	20	23	8	32	15
TGTTCGAATGCTTCCA	ref_3356_reverse	5	6	4	2	6	4	7	3	8	5
ACGTTCGCAGGCCTAT	ref_3356_reverse	4	9	1	8	10	7	13	5	10	6
GCACTACCAGTACCTA	ref_3356_reverse	16	23	36	30	28	13	29	26	30	15
GGGGTTCTAAGGAGCT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TAAAAGGCTTCGCCGT	ref_3356_reverse	0	0	0	0	0	1	1	0	1	1
ATCATCGTATCACATA	ref_3356_reverse	16	22	19	11	18	11	19	6	14	12
AAATGTCGTCGAAAAA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
ACATCATCTTTTCATT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGATATAGTTGAGGCA	ref_3356_reverse	17	21	20	11	23	15	20	24	27	14
TGCGAACTGTTGCAGA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGATGGCTTTGCAAGA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTTAGTAAATGT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AATGAAGGCGCTCTTA	ref_3356_reverse	11	17	23	24	34	30	13	17	26	16
ATTCACTAATGGTTTC	ref_3356_reverse	8	1	10	6	5	6	7	7	2	8
TTTTCAATATACACTA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCACACGGTTGGT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGGGCACGCGAAC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
ACGACTTTTTCGACTT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CATACTCTGGACTTAC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TATGAGTACCCGAGTT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
GTGAAACTCTTGTTTG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGACATTATGACGCTA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTTCGCCGGCGGC	ref_3356_reverse	10	9	17	15	15	8	7	7	13	10
GTCGCACGAAACCAGT	ref_3356_reverse	5	3	9	6	11	6	7	3	4	8
CGGGATGACCAGTACA	ref_3356_reverse	46	43	46	44	45	43	50	39	39	41
ACAGAAGTGCCCCTCA	ref_3356_reverse	19	33	30	28	33	22	32	34	36	26
TCCGTCACCGATTTTG	ref_3356_reverse	64	54	64	43	69	57	70	63	77	47
CTTTCTACTCTTGATG	ref_3356_reverse	305	423	385	328	451	329	461	321	475	332
ATTAATCTCGCTTCCT	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGAGCGTTTTCTTTAG	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TATTAATGTAACAATA	ref_3356_reverse	18	29	22	7	23	17	24	22	21	18
CGGGAAATGACTACGT	ref_3356_reverse	20	28	19	26	29	21	14	14	22	23
CTGGGACACCGACTAT	ref_3356_reverse	10	26	18	10	15	15	30	14	19	15
CTACATGATTCTCATA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGAGCCACGATAT	ref_3356_reverse	18	30	31	34	30	23	44	14	32	21
TCTGTTGAGGCGCGGC	ref_3356_reverse	8	25	15	11	14	10	14	5	13	9
TAGTGCCAGTTTGCCC	ref_3356_reverse	54	73	63	44	49	41	83	36	74	38
CGATCCGTAATGCTTC	ref_3356_reverse	9	16	22	8	32	20	20	12	20	15
TGTTAGATTAGGTTCC	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTACTTGGTACTCGCG	ref_3356_reverse	63	98	69	75	78	77	94	62	89	67
CTTTAATAGTGTAGTG	ref_3356_reverse	9	10	13	22	10	9	8	9	17	8
GGTTCTGTGTTGTCCT	ref_3356_reverse	10	13	16	15	15	9	21	6	18	15
GTAATGCGGTGTACGG	ref_3356_reverse	79	98	81	69	101	63	88	67	96	73
GGGAGTTTGCGTCTAT	ref_3356_reverse	6	10	8	7	7	5	10	2	5	4
TCTGTATCTTTTAAAC	ref_3356_reverse	4	5	6	5	9	4	4	6	3	1
GCCCATCTGATAATAA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGACATATTTGCTCAA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTGTAGCGCCATTGGC	ref_3356_reverse	27	42	31	37	30	39	55	28	33	23
TGGCCCTCACATCTGA	ref_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCTTACGACAGTG	ref_3356_reverse	24	25	39	31	17	17	19	15	33	26
GATATAGAACAGTACC	ref_3161_reverse	129	184	148	148	172	116	215	100	173	128
TTGATGCGCTTATACC	ref_3161_reverse	4	5	5	4	4	4	3	4	4	1
CTCCCCAACATGATTC	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
ATAATGTTTTGCTACC	ref_3161_reverse	5	15	12	11	17	3	16	6	19	12
CCCGGTATCGAATCGT	ref_3161_reverse	144	167	145	134	143	140	146	133	164	103
GACGTCATAGTTCAAT	ref_3161_reverse	11	13	11	15	9	12	20	9	18	8
TCTTGTTGCTTTCGAG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTACTCCTTGGT	ref_3161_reverse	150	161	185	183	165	129	150	131	149	120
TCAGAGTTTTAGTTTC	ref_3161_reverse	22	81	48	65	75	58	84	61	90	48
GCCGGGCCTCCTCCGT	ref_3161_reverse	30	63	52	29	49	39	69	42	53	38
CGATTCCACGTGAACA	ref_3161_reverse	37	39	28	40	47	34	29	30	57	25
TCCTCGGCCACAGCCC	ref_3161_reverse	2	6	1	2	2	1	3	4	2	0
ACGCCTTGTGGCTTTA	ref_3161_reverse	17	40	37	24	48	29	32	28	52	19
AACGCAAGTAGGTCTG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCTGAATCGCTGA	ref_3161_reverse	23	39	34	26	32	38	27	27	30	27
TTCACATATCCGGCTG	ref_3161_reverse	44	25	47	33	44	36	37	31	38	30
CTCTGGTAGTTTACGG	ref_3161_reverse	26	33	30	29	30	30	37	20	25	16
GTATGTTCCTGAACTA	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTCTGGTAATGCC	ref_3161_reverse	81	106	112	90	119	96	112	90	124	84
CTAGCCTCGGCTGCTT	ref_3161_reverse	14	33	21	20	38	24	29	13	35	19
ATTCGTCGGCATATAC	ref_3161_reverse	10	8	14	7	10	13	8	10	15	5
AACCTCTTTCGCTCAC	ref_3161_reverse	39	60	52	56	73	47	60	44	72	51
CCGTAGGTTTGCAGAT	ref_3161_reverse	58	99	75	69	74	57	84	59	96	49
CCGTAGTATGGCTGAT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCACTCTGATTAGACG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
CTACCGGTCAGTGGCA	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTCTGTTTAGCCT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCCAACGCCCTAT	ref_3161_reverse	47	55	61	65	89	54	62	49	86	57
ATCGGTAACTTATTTC	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TTTCATCGTGTATCCC	ref_3161_reverse	20	14	24	14	17	13	23	13	25	16
TTTGAGCACGCATAAT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTGTCTACGAACT	alt_3161_reverse	26	32	34	40	37	22	52	28	36	23
TGTGATTTATCCCATC	ref_3161_reverse	53	66	63	53	75	43	62	41	70	40
GATCTGTTATGTCACT	ref_3161_reverse	52	75	74	56	81	59	92	68	64	52
GATGGGCTTTGCGTTA	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCTCCCCTGGAGT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
AATTATGTTAGGGGTC	ref_3161_reverse	408	503	506	407	471	380	492	402	577	368
GTTGGCATTTTGTTCC	ref_3161_reverse	35	52	43	48	47	35	54	37	64	24
ACGCCGTAACACAAGG	ref_3161_reverse	11	12	7	12	13	8	10	10	12	6
GATTTCCCAGTGTCTC	ref_3161_reverse	0	1	4	1	3	1	0	1	4	1
CTACAAGTTTGATGCA	ref_3161_reverse	26	24	27	25	20	13	37	30	25	21
CCCAGTCTGGCTATAT	ref_3161_reverse	16	17	16	25	23	16	35	8	25	16
TGCTCCCGTCTCGCGT	ref_3161_reverse	8	28	27	29	23	20	38	15	30	16
CTCGGCCCAGTGCTCT	ref_3161_reverse	0	5	0	0	3	0	1	0	1	1
AGTATATATGTAATTG	ref_3161_reverse	46	63	63	46	52	41	75	31	60	34
GGCAGTAGGTTCTCCC	ref_3161_reverse	4	14	9	7	10	11	17	9	14	9
AGTTGCTTGGGCGTAA	ref_3161_reverse	4	3	9	5	7	9	5	2	4	7
TCACAAATGGTCCTTC	alt_3161_reverse	248	312	304	288	342	222	305	240	300	227
AGACGACCAGCCTTTT	ref_3161_reverse	0	0	0	0	2	0	0	0	0	0
CTTCGCTTGTTACTCT	ref_3161_reverse	53	96	68	68	114	62	98	58	112	51
TCCGGTCCCGCAAGAC	ref_3161_reverse	1	3	1	0	0	0	0	1	1	0
ATTTATTTTAGGTAAC	ref_3161_reverse	8	12	8	15	12	6	13	11	8	13
CGCGCTTTCCCGGACT	ref_3161_reverse	5	12	7	4	13	8	7	9	10	10
GGTATGTTAGTTGTCT	ref_3161_reverse	26	41	39	41	52	28	45	25	36	30
AAGGACCAACATTTTT	ref_3161_reverse	35	76	52	39	75	46	61	51	85	38
ATCCGTACCAGGACTT	ref_3161_reverse	136	159	167	138	175	127	170	114	163	129
TTTAGTAGCAGTTTAC	ref_3161_reverse	12	21	15	7	33	10	21	9	16	7
GATCTAGAACAGTTGA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CGTAATCCAGAACAAT	ref_3161_reverse	16	16	24	13	17	10	30	15	20	13
CTCTGAAGCGCGCATT	ref_3161_reverse	5	5	5	11	4	7	11	7	7	5
CTCGGGTTAGAGGAAA	ref_3161_reverse	11	20	22	14	20	11	11	21	18	13
TATTAGAGGTCGGTTC	ref_3161_reverse	3	1	3	1	2	3	0	2	6	1
ACTCAATGAGATGAAA	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
AATTGACGAAACTCAT	ref_3161_reverse	155	166	207	160	182	150	188	136	196	117
GTGGTCGCTTTGTCCC	ref_3161_reverse	14	24	31	17	22	14	18	16	23	20
ATTAGGTCATTAAATT	ref_3161_reverse	31	43	41	25	35	40	40	27	43	42
TTTGTCGGGAACCAAT	ref_3161_reverse	85	81	89	79	82	65	95	81	93	64
TGATACTCGCAGCCCC	ref_3161_reverse	6	8	9	12	8	10	10	9	12	9
CTAGACTGAATTTCAC	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGCATCCTTTCTC	ref_3161_reverse	14	13	13	10	14	7	21	6	14	11
GGTGAACGCCCTTATA	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
GATGTCGCCCGGCCTC	ref_3161_reverse	45	45	57	40	42	55	51	48	60	39
CATATTGAGAGTGCAC	ref_3161_reverse	40	61	24	33	58	18	42	24	54	27
TTTCCAGGATATCGAA	ref_3161_reverse	10	9	14	8	19	14	13	16	7	6
TAGTTCTACTTTGAGT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTTATATCCGCGG	ref_3161_reverse	203	273	252	204	269	178	262	187	266	193
CGTCGCATTAGTATCC	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
GCATAGAGACAAGCAA	ref_3161_reverse	63	75	55	59	86	49	68	47	51	56
TCTTTACCGTGTCGAC	ref_3161_reverse	30	55	33	39	47	25	71	28	47	19
CCGGAGTTCCATGACT	ref_3161_reverse	44	32	41	28	35	30	54	24	58	18
GTTCAGTTGCGCGAAT	ref_3161_reverse	143	214	205	186	234	150	262	165	263	156
TAATGGCTCCTTCCTT	ref_3161_reverse	4	3	7	3	3	4	2	5	6	2
ACGCCTAGTGACGATG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
CTCCCTGATCCCAGAA	ref_3161_reverse	8	43	17	15	56	21	60	13	43	13
GCGCTTAGGCTCCGTG	ref_3161_reverse	13	14	14	12	17	7	25	6	20	11
CACGCGCGCCTACTCC	alt_3161_reverse	6	17	7	10	10	9	9	10	8	13
CAAGTGTCGCCTCGCA	ref_3161_reverse	16	21	33	18	36	25	27	18	36	32
TACGTTGACCAAGAAA	ref_3161_reverse	23	26	21	21	24	22	17	21	37	25
GAATACATAGTTGCAC	ref_3161_reverse	31	26	34	29	31	19	41	15	41	24
CAAGTGTGGTTTCGGT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
AATGAGTTGATTGAAT	ref_3161_reverse	5	10	10	5	4	6	11	8	8	9
GGACCATGGTGTCCCC	ref_3161_reverse	24	36	37	37	34	32	32	28	38	31
TTCAACACTCACGCAA	ref_3161_reverse	59	73	61	61	90	59	85	63	101	76
TTCTTATAGTACTTGG	ref_3161_reverse	32	56	39	44	45	21	75	31	47	28
AGAGATCTCCGTGCGG	ref_3161_reverse	76	126	108	91	128	78	125	99	117	82
ATGGCTTTGACTTGCA	ref_3161_reverse	5	19	2	7	11	3	7	9	11	4
CAGTGCCCGTGAAGTG	ref_3161_reverse	49	56	70	53	61	44	70	41	71	31
GTTATGCTTTACTTGT	ref_3161_reverse	15	24	18	20	17	22	27	13	17	16
TCGTAGGCTTGGTGTC	ref_3161_reverse	39	39	39	37	50	41	60	34	72	28
GCACATCCTTTCCGAT	ref_3161_reverse	1	2	0	2	2	3	0	4	5	1
TCAGCTTTGTCCCCCG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
GGCACTTTGTCTGTTT	ref_3161_reverse	12	8	9	18	20	16	13	16	22	10
ATCTGCCCTTGTAGGT	ref_3161_reverse	7	9	15	14	12	9	12	5	7	3
CCGCACACTGCCCCGG	ref_3161_reverse	12	41	18	24	45	11	44	13	48	17
TAGTTGTATTACACAC	ref_3161_reverse	18	23	21	18	29	25	30	16	43	34
TGGCCCGGTCAAGCTA	ref_3161_reverse	2	7	7	8	13	3	4	10	11	4
GTTGATACGCGTTGGC	ref_3161_reverse	75	90	102	94	114	80	151	84	132	89
TACAATTCAGAGAAAG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TCCCAATGCTTCCTGG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGGGATCGAAATT	ref_3161_reverse	52	42	69	67	60	41	74	66	66	49
AGCGGCCCTAACTGTA	ref_3161_reverse	17	31	28	15	34	26	32	26	28	16
CCGGTCATCTCTCTGT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCCGGCGTCCTTT	ref_3161_reverse	6	21	21	14	28	17	27	9	31	17
GGGCGAGGGTTTCCAC	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTAAATCAGTGGC	ref_3161_reverse	1	5	12	6	10	3	4	8	12	8
CCTGCGGTATTACTCC	ref_3161_reverse	14	24	14	11	22	9	32	17	30	21
TATCGTTGAGGACGAG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTCATAATAGCGT	alt_3161_reverse	123	192	164	118	188	112	186	132	233	137
GATCCCCAATAATGAC	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
AAGAGGTTGATCCTGT	ref_3161_reverse	18	25	17	16	16	22	17	12	36	16
GGTCGCGGAAATGCAC	ref_3161_reverse	24	20	23	21	24	14	20	24	21	18
GCAGGGGTGTTAGCCT	ref_3161_reverse	22	29	27	29	33	28	39	27	33	22
ACCGTTATATCCGCGG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
TGACCATGTTCCTGTG	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTAACGTTTTATC	alt_3161_reverse	36	53	57	46	61	59	66	55	56	37
ACCGAGTGGCCACTCT	ref_3161_reverse	17	12	26	27	22	21	19	23	36	17
TTCAGGCAGGTGAGAC	ref_3161_reverse	5	9	20	11	20	6	14	8	10	18
ACATATTTTAACGTGT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
ACGGAGCCACAAGTAC	ref_3161_reverse	4	17	12	10	23	7	17	12	19	10
TATTTAGGCTGGGGCA	ref_3161_reverse	29	59	59	42	79	47	69	52	69	40
GTGTTTTTAGTCTGAT	ref_3161_reverse	69	93	122	96	105	78	94	78	118	59
AGCCCATGAAGGCTAT	ref_3161_reverse	0	0	0	0	0	0	0	0	0	0
CGTGATGGTACGGTCA	ref_3161_reverse	43	50	55	39	57	44	70	53	85	45
TTCCGAGGTTATGTTT	ref_3161_reverse	7	6	10	13	10	13	13	5	9	12
GCCCAATAGGCGTTAA	ref_3161_reverse	18	11	29	22	32	27	34	15	32	19
GCGCCTCTTAGTCTTT	ref_3161_reverse	20	23	22	23	21	18	13	15	25	14
ACATTACAATTGCTTG	ref_3161_reverse	112	134	138	141	123	104	141	94	147	96
CTGAAACTCTATCCTT	ref_3161_reverse	8	13	5	6	11	8	14	4	10	6
TCCCACTAGCTGGCCT	ref_1834_fdr	31	19	22	22	9	24	20	25	14	14
TTCGGTTAAACCATTT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTTTATGATCGCCCCC	ref_1834_fdr	86	49	106	86	54	73	81	82	53	70
GTCGGTTTAGCGTCGA	ref_1834_fdr	5	6	8	9	3	11	4	5	6	3
GCTGAAACAACACTAA	ref_1834_fdr	36	33	55	41	20	47	32	30	26	38
CCCGTGACACTGTCAT	ref_1834_fdr	10	13	19	22	13	14	19	14	16	15
AACCAGAATTAACGGG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TAGACATGGACTGCCT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTACTGTTCTTCC	ref_1834_fdr	17	17	29	23	18	16	18	13	23	15
TTCAACGTCCTGTTAT	ref_1834_fdr	9	12	17	4	7	9	7	11	7	9
TAGTCCGGTTATCCAG	ref_1834_fdr	39	17	31	35	26	24	30	31	29	35
GCATATCTCATAGCTT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTTCACTGGTTTCGGA	ref_1834_fdr	21	10	33	24	14	25	14	35	11	20
TTTGCGTATCGCATGA	ref_1834_fdr	50	27	33	44	24	25	22	27	20	33
CTTATGTGTCAGCGCA	ref_1834_fdr	48	36	62	30	42	43	33	41	38	38
TGGGGCTCCTTTCGGA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTTACCAACGCT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CGTAATTTGTGTATCT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTCCAACGTTAT	ref_1834_fdr	14	19	16	27	17	14	13	14	9	14
CTATTCACAGCTGGCT	ref_1834_fdr	75	45	112	88	64	63	47	50	66	80
GTTTGAGCTTATGCAT	ref_1834_fdr	22	39	58	41	29	46	28	54	39	38
TCCACTTCTCATGTGT	ref_1834_fdr	32	29	46	52	27	40	34	43	26	54
TTAAGATTTATTTTAG	ref_1834_fdr	16	18	22	21	18	11	10	18	14	9
CCGGGTAGGCGAAGTA	ref_1834_fdr	19	14	22	19	6	15	8	25	19	15
CGTGCACATGCGGGGT	ref_1834_fdr	21	34	45	44	31	33	32	43	37	27
TAAGACGGATTGGTTC	ref_1834_fdr	19	14	29	33	16	26	14	23	13	21
GTCTCGCACAGTTCCA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GATCACTTGCCGTGCC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CCACGTTGTATGTGTG	ref_1834_fdr	34	17	44	24	21	24	18	25	25	34
TCGCATGCTTTACTCC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTATACACTCTC	ref_1834_fdr	187	178	198	189	218	160	234	157	220	141
CGTCAGACCGACTGTG	ref_1834_fdr	47	30	39	46	40	29	53	39	32	31
CTTCTTCATAAATAGG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CACGGTTAACAAGGCT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GATCATTAATCCAGAG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGAGGGCCGTAACAAG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGATAAGGTGGAG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGGATCTACCATC	ref_1834_fdr	140	71	156	142	81	140	75	93	95	113
ACGGTACTATGAGTGG	ref_1834_fdr	43	43	67	54	36	48	35	53	34	49
TTAACGTTACATTGTG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGACGTTAGTGGATCA	ref_1834_fdr	35	15	45	35	16	33	29	34	23	33
CACTCCCGCTGTGACG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
ACGCATGAGGCGCTTT	ref_1834_fdr	127	73	128	129	58	116	69	104	57	122
TTTTTGCATGCTCTTA	ref_1834_fdr	53	27	101	69	20	60	37	57	41	74
TCTTACCGACTTTGTT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CGATAGATTTCGATCA	ref_1834_fdr	13	7	14	20	9	11	4	7	11	12
TGATTACAGGTTGCAA	ref_1834_fdr	7	12	6	6	6	9	5	1	8	4
GGTTCATGGGTGTTAC	ref_1834_fdr	19	15	34	26	11	26	13	18	10	17
GGATTATGTTCTTTGC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTATACGGTCGTACTG	ref_1834_fdr	4	4	2	7	7	5	12	9	13	0
GCCAAGGGCCCCAATA	ref_1834_fdr	96	82	147	132	92	92	65	108	92	100
TTCTCGTTTTCTGAAC	ref_1834_fdr	70	45	106	65	54	66	54	82	48	57
ATCCGGCTTTATGCAA	ref_1834_fdr	17	18	19	17	22	10	42	6	32	11
AGTCTCTGCACATCTG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
AATTCCTATGTATCGC	ref_1834_fdr	2	2	4	1	1	3	0	4	2	7
CTGAGAGTTGCTTATT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCCCATACGTTTC	ref_1834_fdr	5	6	2	5	11	6	3	2	8	1
ATGAATCATCTGTAAC	ref_1834_fdr	27	23	57	31	29	27	27	29	36	26
TTACTCGGCGCACTTT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGTGCATCCGGGG	ref_1834_fdr	35	12	43	44	16	30	13	28	19	32
GGTACTGAAGACCTCT	ref_1834_fdr	74	57	86	84	37	78	41	89	45	70
TTTTGCCAGGGGGGCA	ref_1834_fdr	52	31	63	56	33	43	37	48	35	31
TAAATTTAGATAGGTG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGGGGATATCATT	ref_1834_fdr	30	12	46	31	21	31	27	29	19	39
ACAGAACTTCACGCCA	ref_1834_fdr	152	101	183	176	80	143	94	155	74	153
GATGGGTTTTCTCTGT	ref_1834_fdr	43	21	48	52	21	36	30	50	26	39
GTTCCGTTATCCCGTC	ref_1834_fdr	21	24	23	22	16	23	18	17	15	14
TGGTCCATTCCGGATC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
AGCAAGCTTGTCAAGC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGTGCACCCGCTT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCCCTACGTCTTC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGTCCTGGGACGC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGTACGGTCGAAGGGG	ref_1834_fdr	157	87	225	204	95	147	95	155	101	147
AAGATTAAGCACGCGA	ref_1834_fdr	5	4	5	7	0	5	5	1	2	8
AGACGCCTTGGTATAC	ref_1834_fdr	7	10	9	10	4	8	7	3	4	8
GCGCCTTCAAACCCCT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCATTTGAAGAATTGT	ref_1834_fdr	50	29	72	56	32	47	31	60	31	50
CGTTACTGCATTGTTT	ref_1834_fdr	66	57	80	86	47	62	44	59	56	67
AAGATCGCAGAGCTCC	ref_1834_fdr	259	148	326	298	127	278	141	224	174	254
TCTGGATAGGTAAACG	ref_1834_fdr	2	1	0	2	0	0	0	1	0	3
CGGGCTTTTAAATTCC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCTATGTTTTAGT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCCGCTGTTAACC	ref_1834_fdr	99	49	144	106	67	85	88	103	75	82
CAGATTTTCTTAAGCG	ref_1834_fdr	232	140	260	255	130	194	157	215	159	171
ATTGAGATCGTACACA	ref_1834_fdr	123	83	168	145	89	101	75	124	87	105
CCTTCTTATATGTTCC	ref_1834_fdr	41	24	42	40	37	57	34	27	43	50
GCCACTTGTTAGATAT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCATGCCTTTACT	ref_1834_fdr	4	14	14	6	6	8	6	7	3	4
CACCCTTTATTGTGGA	ref_1834_fdr	19	16	24	18	12	12	7	16	12	22
TAGCCGTCCCGCTAGC	ref_1834_fdr	105	75	133	108	84	99	77	109	101	85
TATACTAGCGACGTTA	ref_1834_fdr	48	27	58	57	33	60	38	46	36	44
TCGGCACCCTTTCAGT	ref_1834_fdr	70	52	78	71	42	82	62	57	42	71
TTTTGCGCGGCTCTCG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCTTTTCTCTGGA	ref_1834_fdr	191	80	220	167	81	151	91	140	92	158
CCGCGGCAGTGCACTG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTAGATCCCGCAAAAC	ref_1834_fdr	85	69	103	112	44	85	52	85	69	79
TGGTCCTTACATCTCC	ref_1834_fdr	5	6	11	6	6	10	4	9	4	5
AAATTCGACGCTGGTT	ref_1834_fdr	48	28	87	65	49	52	45	73	36	50
TTGCTACCACTTAGAT	ref_1834_fdr	52	34	76	56	37	50	36	62	33	39
TCTATCATTTTACTCG	ref_1834_fdr	15	14	21	21	7	17	10	17	19	15
TGGGTTCTGTAGCATA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGCCAATCATATA	ref_1834_fdr	14	8	20	17	7	15	12	4	10	7
CCGTGTTGATTCGCCG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGATCCGCCACGG	ref_1834_fdr	12	6	19	22	4	11	12	22	12	22
ACCCCGCATTTATTCA	ref_1834_fdr	24	15	42	23	16	19	18	23	12	24
TGGTTCCGCCCTCGTG	ref_1834_fdr	17	12	38	25	15	27	15	30	21	24
CATTGCTTGTAAAAAA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTGAACGCTGTAT	ref_1834_fdr	96	66	146	114	63	114	94	108	86	107
TAACCGTGATATGATT	ref_1834_fdr	15	12	14	8	6	10	10	7	3	7
TTTAACCGGTGCACTG	ref_1834_fdr	62	48	78	84	53	72	60	54	53	63
TTTCCGGGAATCATAA	ref_1834_fdr	50	40	58	53	25	46	22	36	26	44
CCGTCAGGTCGGAAAG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTGGTTATATTGG	ref_1834_fdr	263	162	327	273	166	227	158	232	189	208
TGGAGGCCAATATTAA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CGCCATCGGGTTTGCA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTACAATTTCACC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGTACTTTACGAG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CGTGCTGGTATAAGCG	ref_1834_fdr	37	11	42	22	14	36	19	20	14	25
AGTGGCGTCACCGCTG	ref_1834_fdr	211	111	254	236	107	184	117	217	113	165
TTATTCGGCAAGCCTG	ref_1834_fdr	46	21	63	37	18	49	33	53	30	49
GGAACGGGAATCAGTT	ref_1834_fdr	16	5	18	15	8	14	12	10	9	13
ATGTCCATTGGATGAC	alt_1834_fdr	206	137	212	212	133	193	139	184	128	173
ATACGTCTTCCTTAAG	ref_1834_fdr	238	115	235	214	126	191	129	180	146	201
TGGAATTCAACTCGAT	ref_1834_fdr	60	41	46	46	32	45	41	56	34	45
CCAATATCAGCTTCAA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGCATCATCTAAA	ref_1834_fdr	54	30	63	55	36	40	34	41	30	46
AAGACATTGGTAGTAC	ref_1834_fdr	15	10	23	16	23	15	16	15	14	7
TCAATCCAATGGTTTT	ref_1834_fdr	9	5	9	12	8	9	15	11	5	14
CAAAATCGCATTATTG	ref_1834_fdr	45	28	57	53	41	47	30	41	24	41
TCAGGCACTTTCTTGT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
ACCGATAATGACGTAT	ref_1834_fdr	169	104	199	154	102	182	114	203	94	158
TAATCGGCTTACAGTA	ref_1834_fdr	30	30	26	18	22	31	21	25	27	19
CATAGTCACCGGATCG	ref_1834_fdr	19	20	30	31	32	37	15	27	17	20
TGGGCGACACAGGTCG	ref_1834_fdr	20	20	36	38	17	32	18	37	14	23
CTTTCACGGATCTTTT	ref_1834_fdr	6	0	5	5	2	1	5	6	4	11
GCTTGGCTTTTAAATG	ref_1834_fdr	57	33	51	38	36	66	33	55	53	42
TGCAAATCGCTTCTGC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTAGGGCTGAGAT	ref_1834_fdr	28	10	19	21	11	19	23	15	10	26
GGACAGTAAGCATAAT	ref_1834_fdr	39	25	49	37	24	38	23	44	24	43
GTGCATGAATCTCTTT	ref_1834_fdr	6	4	7	8	3	5	3	3	4	4
AATCGTTCTGCCTGAT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
CACCGCCCAATGGCGT	ref_1834_fdr	7	4	9	6	2	5	1	6	1	7
AACTAATCGAGTTAAT	ref_1834_fdr	1	0	0	1	0	0	0	2	0	0
TGACGTACTTTAGACA	ref_1834_fdr	62	34	56	58	40	38	44	50	39	36
AGCCTCGGGTAATGTA	ref_1834_fdr	56	66	72	68	50	43	46	46	52	61
AAAACTGAAGATTCTA	ref_1834_fdr	12	3	20	9	10	7	11	12	8	17
ACCAGTGCATAGTAGA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GCATTGATTTCTAATT	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGGGCCTCTGACG	ref_1834_fdr	57	20	55	35	36	45	28	51	30	42
ATTCGTTCCTATGGTA	alt_1834_fdr	51	28	76	50	31	46	33	40	46	56
TTATGAGTAACTCATC	ref_1834_fdr	2	0	3	1	1	0	0	2	1	2
CCGCTGAGTCTCGTGA	ref_1834_fdr	77	51	78	74	42	86	46	55	52	70
TATTTGGCCGTGTGAC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGGCAGTTCCGTAAAC	ref_1834_fdr	50	29	73	53	27	54	27	48	23	43
TCGCTCCCGTACCGTA	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGCCATAGTAGGATGT	alt_1834_fdr	100	44	133	92	70	95	56	109	85	85
CCTTGCGGGTCAAGTA	alt_1834_fdr	19	21	31	19	27	23	23	26	36	22
TACTTGGATTATCTCC	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
GATTACGCAATTAAAC	ref_1834_fdr	34	17	41	33	35	37	13	31	21	26
ACTCCTGCGTCTACGC	ref_1834_fdr	5	13	6	3	12	9	13	5	23	4
GGTGCTCGGTAGTTAC	ref_1834_fdr	40	26	48	42	29	46	24	48	23	35
GCGGAACTCTTTCAGG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
AGATTTGATTCTGGCG	ref_1834_fdr	0	0	0	0	0	0	0	0	0	0
TACAGATAGTTTCACC	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
GACAAGCGCCACTTTT	alt_1105_RC	394	137	507	451	125	383	146	409	153	343
CGAGAATAAGGTTTAA	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
GCGCTTTTGGCCCCGC	alt_1105_RC	35	14	49	57	16	31	16	37	20	44
CGCTTACTCCTGCTCG	alt_1105_RC	925	425	1240	1044	455	930	448	1009	476	816
CTTTGGCCCGACACCC	alt_1105_RC	35	16	16	25	9	22	15	16	14	26
CAAGTCGTCTATTCCT	alt_1105_RC	7	1	21	15	3	21	4	10	10	16
ATTGCCAAGAGGAACT	alt_1105_RC	59	12	68	47	22	59	23	55	20	41
GTACCAACGTGAGGGA	alt_1105_RC	180	69	223	202	64	177	52	183	63	181
TGACACTATACAAATG	alt_1105_RC	284	91	331	267	100	280	92	255	86	250
TATATTATATTGTCCT	alt_1105_RC	85	24	87	88	34	80	23	91	36	51
ATCCATCAGGCCCGCT	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
GAGGTTTCGTGACTAC	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
CGGCATTCTTTCATCC	alt_1105_RC	19	4	30	31	15	36	8	22	13	18
GCCTAAACCTGCCCAC	alt_1105_RC	101	40	125	117	31	96	29	109	45	96
AGGTAGCAGTATCGTC	ref_1105_RC	789	223	1023	860	256	774	257	804	256	726
GGATTTGGGTCTTAGT	alt_1105_RC	91	36	91	100	35	103	32	83	41	71
TAATGTTTACGACGCT	alt_1105_RC	190	66	235	203	79	186	55	199	68	156
AATCGCCAGACGACTT	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
CACTGAGGGGTTTATC	alt_1105_RC	527	163	632	574	174	527	177	537	189	435
CCTGCACTAGGATACG	alt_1105_RC	57	46	49	63	52	54	63	39	60	55
AGTGTTAGAACTCCCT	alt_1105_RC	25	7	28	32	11	32	7	31	15	20
AAACCTGGGATAATGG	alt_1105_RC	197	73	215	190	63	163	62	163	77	148
CCGCGATGGTAGGTTT	alt_1105_RC	89	19	103	97	34	76	39	94	37	77
TAGTCATTCACAGGAG	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
CATTTTTGGGTACCCG	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
CTTCGTGCGAGTGCGA	alt_1105_RC	237	84	269	243	62	230	88	246	79	209
TCTGGTCTTGTTGGGA	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
CCATTCAGTCATCCGT	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
GTGGTAGGTACGTCTT	alt_1105_RC	187	92	274	222	72	188	93	231	90	169
CACGCCGAAGTCTTCC	alt_1105_RC	60	26	71	70	16	56	19	56	13	50
GCCGGATGTTAGTCCT	alt_1105_RC	9	3	11	11	3	7	2	6	2	10
CTTTCCCTCGGACTTT	alt_1105_RC	106	29	142	122	48	115	32	101	47	87
CTTAAGTTGATGCGCT	alt_1105_RC	41	17	71	40	17	42	18	47	23	40
ATACTCATCTTGCGTT	ref_1105_RC	481	171	582	504	164	472	171	394	176	432
TGTTACGGCGTGCGCA	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
GATCGGGGTCGCACGT	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
GTTGTGTATGCCGCTT	alt_1105_RC	57	12	69	57	30	59	21	48	22	53
GAGATGTGAATGTGCT	alt_1105_RC	31	17	44	49	22	33	22	39	13	47
TCGGTACCCGGAGAAC	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
CAATCGAACCGATGCT	alt_1105_RC	43	17	75	48	29	46	15	38	20	40
GTCCCGATAGCTCTGC	alt_1105_RC	6	1	3	4	3	5	0	3	0	4
GCCCATATGGAACTAT	alt_1105_RC	88	33	102	83	37	59	19	94	21	65
CAAGTGGATTAGATCC	alt_1105_RC	192	65	218	192	56	153	59	168	59	168
ATGTATGTAAGGGAAA	alt_1105_RC	16	12	28	28	13	22	9	33	14	42
GGGTACTCTCCTATTT	alt_1105_RC	63	19	55	45	23	52	17	48	23	49
TCGGGACTTTGTTTTG	alt_1105_RC	7	2	6	10	4	12	6	10	11	8
TTACTGTCGGGGTACA	alt_1105_RC	358	141	449	339	146	312	118	359	104	306
GATTTTCTTCTGCCGT	alt_1105_RC	115	33	137	111	34	98	38	87	48	92
TAGACCATTATCTGTG	alt_1105_RC	333	120	341	277	105	288	117	292	132	260
GTTTTTCACCTCACCA	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
TTTCTACTCCGGTCAG	alt_1105_RC	106	32	133	116	39	98	37	89	33	108
TTTGCGAGGGAAAAGT	alt_1105_RC	38	16	47	43	26	33	31	44	15	32
TACGCATGTCGAGTTG	ref_1105_RC	883	280	1091	1045	249	944	276	883	293	863
ACTTGGCTGTTTTAAC	alt_1105_RC	83	37	97	90	33	66	33	89	31	67
TATTTGGCGTATTCCA	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
TTGTTGAATCGTGCCT	alt_1105_RC	195	42	229	182	57	164	48	197	64	183
TGAGAAGCCGCTATGC	alt_1105_RC	52	28	43	55	12	56	21	38	19	55
GTTGGTTTTAGGCACG	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
TTAACCAAAGCCGATT	ref_1105_RC	151	49	191	167	40	181	75	174	63	125
ATTCGCCAGACGACTT	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
ATGACTTTGGTGCCAG	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
TCGCTTCTACGATATT	alt_1105_RC	261	70	297	266	80	214	77	205	74	230
AGGGATCGCGTCTTAG	alt_1105_RC	106	39	125	97	30	85	48	97	46	79
ACTCGGTTTGCGTTTC	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
CGAGAATAAGGAGGCC	alt_1105_RC	484	174	565	471	168	485	132	494	169	420
ACTGAGGATGACGGGG	alt_1105_RC	95	37	163	126	39	126	45	128	52	127
TGCGAATTTTGCTTCG	alt_1105_RC	156	37	169	155	56	149	63	124	60	136
CCGATTTCATTGTATG	alt_1105_RC	0	0	0	0	0	0	0	0	0	0
GGCGGATTCAGGCAGT	alt_1105_RC	272	83	338	275	81	247	104	265	96	224
GTCTCTGCCCACGTCA	alt_1105_RC	633	250	718	725	240	664	278	674	280	649
ATACATAATAGGGTGG	alt_2047_fdr	146	77	152	120	67	121	68	100	83	122
TGTGATCGTTTGCCGT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTACTTCTACGC	alt_2047_fdr	197	122	249	222	129	225	134	216	124	213
GACTTTCGCCGCGACT	alt_2047_fdr	11	9	12	12	10	12	5	14	11	13
TTCTACCGTAATGAGC	alt_2047_fdr	77	59	115	99	78	69	62	78	55	97
GTCTATCGATCTGCAT	alt_2047_fdr	11	22	29	25	12	20	8	18	15	19
CACCATATCTGTAGAT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCTACGACGAATTTGT	alt_2047_fdr	117	47	107	90	61	70	36	92	59	66
GCTAGGCTTGTGATCA	alt_2047_fdr	14	14	23	21	15	17	11	21	21	18
CACAGAGTTCTATTCG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTCAATCGCCGCCGCC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGGGCGTCGTTCA	alt_2047_fdr	45	31	49	40	22	46	32	34	22	41
GAGTTGGCCCTCTAAG	alt_2047_fdr	22	7	23	22	15	17	17	17	16	21
GCCGTGAACCTTTTTC	alt_2047_fdr	4	2	16	10	5	9	5	5	7	5
CGCTGCATAGTTCGGT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCTTTGCCCACGT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGCTTCTCTCGCC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGCATTTGCTGGC	alt_2047_fdr	23	10	27	18	11	23	11	21	7	14
CCTGACGTGCGTCTCC	alt_2047_fdr	3	5	10	7	3	7	7	9	9	5
CCACCTTACTCTTAAT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCGTTTTGTCCGG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
ATTATCAGTTATTACT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TATAGTCGGCCTCACG	alt_2047_fdr	71	30	88	89	50	75	38	62	35	70
TATAACCTCACATCTG	alt_2047_fdr	42	20	44	27	28	34	27	34	23	27
GATCCCTATGACGTCG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
CCCACCAATAATTTTA	alt_2047_fdr	11	20	24	17	10	15	12	24	14	24
AATGTATAAACGCTCG	alt_2047_fdr	75	46	79	80	36	60	41	59	58	65
AAGGGCTGGTTCTTGT	alt_2047_fdr	25	18	21	27	14	20	12	23	14	22
TGTATTCTACTGTTTA	alt_2047_fdr	74	44	62	66	41	55	34	65	48	44
GGTGCGGCGTTTGTCA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TATAGATTGTTCCAGC	alt_2047_fdr	86	63	118	116	64	91	61	96	54	84
GCCGTGCAGTCCAAAC	alt_2047_fdr	8	7	11	9	8	9	12	8	10	8
GTCCCATTAACATGAA	alt_2047_fdr	16	5	30	14	18	11	15	20	9	16
TGGTATTTTTATGGGA	alt_2047_fdr	40	16	42	37	20	28	22	36	11	31
ATGGACAGTTCGCTGT	alt_2047_fdr	111	52	141	122	67	114	84	122	75	90
AGCATACCGGGTGGGT	alt_2047_fdr	206	100	245	198	118	186	105	207	116	182
ACTTCCATCCTGCGCC	alt_2047_fdr	73	42	100	94	43	94	48	84	57	79
CCAGGTTCGAACCGTC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTGTTCTTTACCT	alt_2047_fdr	26	7	24	32	10	28	18	15	20	18
TTATCTCTTTATATTG	alt_2047_fdr	25	9	29	18	10	23	13	19	17	17
CGGGGCTCTTGAGCTG	alt_2047_fdr	8	2	12	11	2	9	3	11	2	8
CTCAGCGGTATAATTG	alt_2047_fdr	22	23	48	34	33	38	21	37	26	19
TCGATTGTGAGCAGCT	alt_2047_fdr	43	16	42	51	21	38	32	35	24	40
GACTCTCCCGCTGAGG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
AACCTTTTTAATTATT	alt_2047_fdr	37	22	49	46	28	50	16	31	26	39
CCAGTTGAGCCATTGT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGAAGGCCGGCAG	alt_2047_fdr	47	35	77	44	25	57	40	65	41	46
GTCTTCATGGTGTGAC	alt_2047_fdr	8	3	5	1	3	1	5	6	3	5
CCCAGTTACTCCTACG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTCTGTGGCACGC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGCGGCGACTTGC	alt_2047_fdr	77	93	100	79	67	75	109	67	87	80
TTTTGACAGTCCGGGG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCACCCTGATGGCTCC	alt_2047_fdr	10	9	11	14	7	18	1	14	12	14
TATTACAGACAGGTAT	alt_2047_fdr	18	13	34	19	13	29	16	28	14	17
CAGTGTTCGTGCCCTT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGGCTAAGCACCA	alt_2047_fdr	69	33	73	56	41	57	28	44	52	48
GGGTAGTAGTCCAGTT	alt_2047_fdr	49	27	52	42	27	35	22	33	32	38
CCTAGGGTCCTTTTCG	alt_2047_fdr	425	276	449	430	240	346	249	352	307	365
TAGACGTTCTAATCAT	alt_2047_fdr	2	3	9	4	2	7	6	5	1	3
TGAGTGAGAATCTCTT	alt_2047_fdr	102	49	110	115	56	92	47	83	57	90
AGTTCGTATGTTATCT	alt_2047_fdr	279	209	354	333	171	269	189	257	194	252
ACGTTAAATCGAAGAA	alt_2047_fdr	24	23	40	45	12	30	24	37	21	22
GTACAACCTAACGAGC	alt_2047_fdr	34	16	29	29	27	35	14	25	13	20
GGATCTTTGTTGATTC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCGCCTAGTTTTA	alt_2047_fdr	59	44	75	70	38	72	54	74	42	67
GTCTGCGTGTGAGCTC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TATTTCTCAACTACAC	alt_2047_fdr	43	21	54	41	17	36	21	36	29	52
GCCTGTAAGTCAATAG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GCTACGATTTGCCTGT	alt_2047_fdr	20	6	30	15	8	19	6	5	13	10
CCCTATGACTTATTCG	alt_2047_fdr	55	31	50	47	48	40	39	51	39	34
GTATTTGACTGATTGC	alt_2047_fdr	52	27	66	55	21	38	20	54	32	35
TCCCTAGCGAGCCGTA	alt_2047_fdr	57	30	71	87	36	68	35	49	50	70
ATTTACTATGATTCTT	alt_2047_fdr	21	5	8	14	3	11	9	16	6	8
GGAAGACCACAGGGTA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGTTTGGTACTAG	alt_2047_fdr	106	73	133	105	64	84	54	71	66	74
GTCGGCGGATGACTAA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTGCTACGCCGGG	alt_2047_fdr	21	11	24	22	9	20	5	28	8	17
AAAACCGTTTCGACCT	alt_2047_fdr	198	79	215	183	122	172	124	166	119	172
TTTGTATATGTGAATC	alt_2047_fdr	104	52	114	101	72	102	65	111	71	68
GGTTTGCCATGTCCAC	alt_2047_fdr	276	190	305	313	161	299	220	266	186	259
CACCTGCCACTTACTG	alt_2047_fdr	10	6	14	6	6	8	7	4	13	7
CCGGGCGGCGCCTCAT	alt_2047_fdr	21	7	18	17	15	25	11	19	9	17
ACAGGTCTGCTTCTTT	alt_2047_fdr	30	19	45	39	16	47	20	46	26	31
ATTCTGCCAACAGCCT	alt_2047_fdr	28	20	44	37	26	34	43	39	38	28
TCAACCGGTTTGTACT	alt_2047_fdr	3	7	16	7	2	8	6	7	5	8
GGTAGGGACGTTCCTT	alt_2047_fdr	19	12	21	17	17	14	19	21	15	16
GAAACTCTCACATGAA	alt_2047_fdr	34	19	36	47	13	26	19	37	16	25
TTTGCATGCAGGTGTG	alt_2047_fdr	36	25	46	42	17	37	24	34	20	32
TTCATGTCCTGATATT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GCGCGCCCTCACTCCG	alt_2047_fdr	137	66	169	136	83	123	72	123	74	96
ACTTGCGCTCTAGATA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCTGTTATCCTAT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCATCCATGAGTT	alt_2047_fdr	86	91	129	117	82	100	63	98	64	78
AGAGCCGTAACATTGA	alt_2047_fdr	9	3	6	8	6	11	6	9	8	12
TCATTGCAACAGTGTG	alt_2047_fdr	12	14	16	21	25	20	14	11	20	13
CGATTGATACTTCGGG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
AGGCCGGATTACCAAC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGTATTTATCGTCTAA	alt_2047_fdr	17	9	20	18	11	9	13	16	15	14
TTAGCGAAGCCGGCAA	alt_2047_fdr	44	28	31	41	20	42	20	35	21	42
TACTTCCATAGAGGAA	alt_2047_fdr	114	53	131	143	65	107	74	109	69	97
TATATTTTAATTTTCC	alt_2047_fdr	15	4	11	21	7	14	8	8	6	14
GCTTGGCTCTGCGGAT	alt_2047_fdr	3	1	0	2	2	3	2	4	0	1
TGTCCGTGCGCGCAGG	alt_2047_fdr	72	45	88	80	25	62	45	74	41	55
GGTATCTAAATCCATG	alt_2047_fdr	29	20	36	26	17	23	23	21	24	20
CTTTTATCTAGCGATC	alt_2047_fdr	108	55	97	85	48	59	59	72	61	76
GTTGGTCGCGCGTTTC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGAAACTATTCACTTC	alt_2047_fdr	12	4	9	12	2	8	4	8	2	8
CTATGCTAACTACCGG	alt_2047_fdr	18	24	38	32	20	23	13	24	14	26
GCTGCCGTCGCCCTCA	alt_2047_fdr	18	11	25	30	17	20	12	17	14	15
GAGGAGTACTGGTTTT	alt_2047_fdr	19	5	19	18	8	17	12	14	12	12
CGCTGGATAACAGCAT	alt_2047_fdr	128	78	161	125	64	118	83	100	68	107
TTGCCCAATTCTTTGG	alt_2047_fdr	4	0	2	2	2	0	0	0	2	8
CGTGCTGGATGCCCGA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GGGATACAGACCAACG	alt_2047_fdr	42	20	44	46	20	52	26	38	18	35
TTAGTCTAGTTGTCGG	alt_2047_fdr	32	27	58	38	21	36	26	41	25	45
TATGGATACCTTTAAT	alt_2047_fdr	29	8	45	37	12	25	18	35	13	22
GGTCACTGGGCCAGTT	alt_2047_fdr	15	18	18	16	10	17	12	11	16	15
TCTCACTATAGTGACG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTACATCAACCGT	alt_2047_fdr	9	8	8	8	2	6	4	5	5	8
ACCCGGATCTTCACGG	alt_2047_fdr	34	12	30	25	14	27	20	25	18	30
ACTGTGTGTCTATTAC	alt_2047_fdr	28	29	54	50	31	32	27	39	26	36
TAACAGTACTCCGGTT	alt_2047_fdr	22	16	36	37	12	28	12	27	14	23
CCTTAGCCGGATTCGG	alt_2047_fdr	31	16	32	35	23	18	13	23	18	25
TAGCTGACATGAGGGG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTCACCGTACATCAAT	alt_2047_fdr	39	13	27	26	21	33	24	34	25	34
GCGAGTCTCCGCGGAG	alt_2047_fdr	145	90	178	161	76	147	114	168	124	148
TTCGTTTTCCTTTGGT	alt_2047_fdr	99	33	109	122	44	90	35	81	52	71
CCTTTTGAGCCTATCG	alt_2047_fdr	9	25	21	18	29	17	20	14	34	14
TACCCTGGCGAAAATA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GCCCATTAAGCCTGTT	alt_2047_fdr	95	55	96	83	61	104	73	82	55	88
CAGGTTGTCGGCGCCT	alt_2047_fdr	42	33	78	56	31	49	31	59	16	41
GGTGCGTCGAAGGTTC	alt_2047_fdr	32	20	37	24	14	26	20	27	16	22
TCCGTGTTTACCCTAA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCCACTGATAATTCGT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGCCCCAATACAA	alt_2047_fdr	51	39	50	41	29	50	30	59	29	36
GTTTCGCACATAGTAT	alt_2047_fdr	4	3	6	12	0	7	5	2	3	5
GGTGTTGATCTTTGTT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGACAATTGTCGC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TACCCAGACACGGTCA	alt_2047_fdr	14	13	27	24	18	23	16	24	23	19
GGACCATTTCTTTACT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTTTAGTGGCTTC	alt_2047_fdr	23	15	16	20	14	29	12	19	15	23
CTTAGCTGACTCGACC	alt_2047_fdr	55	40	86	63	29	55	45	58	43	48
TTCCCACACGGCGTTC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCCATCGGTATC	alt_2047_fdr	109	76	94	103	58	74	54	89	58	78
TTCTGCTTAATCACTC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAGTGAACTCTAG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCATCTACTCTGA	alt_2047_fdr	120	65	121	110	66	102	60	109	67	117
AATTTGTAACCCGTCC	ref_2047_fdr	242	135	270	252	123	207	123	201	158	208
ATCCACCCTTCCCGGT	alt_2047_fdr	8	10	6	8	7	4	9	12	9	13
GGTCGCGATCTTTAAT	alt_2047_fdr	39	24	65	58	27	49	26	45	24	51
TACTACGGTGCTGTGG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCAGTCCCGTAGT	alt_2047_fdr	60	24	73	55	47	48	29	44	27	42
GGTTTTTTGAATAATC	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTAACGGGTGCGACCT	ref_2047_fdr	298	139	380	304	181	275	164	299	174	244
ACCATGATTTACAGGA	alt_2047_fdr	57	36	77	77	42	59	44	68	45	48
GTTTTCTAAGGGCAAA	alt_2047_fdr	53	31	63	53	26	48	30	40	20	48
TGAACTGCATCTTTTG	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGTACTGTTCAAGGTT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
AATTTCATGTTAGGGT	alt_2047_fdr	91	49	116	94	61	76	66	99	61	102
GGTTCTATAAGGTCGT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
GGGGCTACCCCGGATT	alt_2047_fdr	114	70	133	121	77	108	64	107	85	87
AGCTTCGTGGTCCTGA	alt_2047_fdr	9	4	10	12	6	9	8	11	14	16
AAAGGCACTCAATAAT	alt_2047_fdr	16	4	17	16	6	18	12	15	15	7
ATCGCGTTGAGCCAGT	alt_2047_fdr	28	23	30	29	12	39	16	36	13	32
GCCTCCACCGAATAGG	alt_2047_fdr	14	14	17	25	15	16	13	12	13	12
GATCATTCCGCGGTTT	alt_2047_fdr	1	1	1	2	4	2	0	1	2	0
ATATAAGCCCGGACAT	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
GACCGTGTTACAGGGC	alt_2047_fdr	27	10	30	22	8	18	17	19	20	23
CTGGTCATTCCCTCAT	alt_2047_fdr	21	26	39	26	20	31	20	23	21	21
GCAATATTGATGGTGA	alt_2047_fdr	0	0	0	0	0	0	0	0	0	0
TACTCCCTACGTTAAT	alt_2047_fdr	14	4	8	2	9	6	8	7	9	6
GGTAACAGATTAGGCT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGTTGCAATTACG	alt_3262_upstream	5	0	1	3	2	3	3	1	2	1
GTATAATGATTATCTG	alt_3262_upstream	154	200	176	150	197	153	202	134	208	160
TATCAGGAAGCGTGCG	alt_3262_upstream	2	2	3	0	0	0	1	0	2	0
GCAGGGTCCGGCGAAT	alt_3262_upstream	4	14	9	12	18	8	13	12	12	5
CGTTGCTTTTGTCGTG	alt_3262_upstream	95	142	117	97	162	90	167	77	167	96
GACACGTATATGTACA	alt_3262_upstream	7	12	5	5	6	2	6	2	9	1
AGTTCTCAATCCGGAA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
ACCTAGGCAATTTTAA	alt_3262_upstream	22	37	30	18	45	26	39	18	32	19
ATCATCTACTGTACAC	alt_3262_upstream	7	14	1	6	4	4	4	0	5	7
TTGTAATTACCTGAGT	alt_3262_upstream	4	6	5	4	6	5	12	5	12	3
CAACCGTAGCGGTAAG	alt_3262_upstream	72	171	88	107	136	63	150	69	179	64
ATTTGGTCTTGGGCAA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GCCCACCCATTGATTT	alt_3262_upstream	88	141	115	110	195	107	202	111	169	99
TTGAGCGTACGAACTA	alt_3262_upstream	12	14	14	16	20	7	25	9	17	16
TGGTACGTTCCGGGTG	alt_3262_upstream	13	15	17	13	14	8	12	13	12	9
CTTGACCTCGTGGCCA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
CATCCTGTTTTTGGGT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
AAATGACTTAGTTGTT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TACTTTGCCCCGGAAT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
CACCTGTAATGGGCCT	alt_3262_upstream	16	26	20	27	23	16	23	19	28	10
AAATGGTTACGATGTG	ref_3262_upstream	32	29	31	24	55	40	33	34	34	25
TAACTGCGGGTACTAT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
CCCATTCGACTTAGTT	ref_3262_upstream	9	70	13	12	62	12	78	15	55	10
AGCACTTTTAGATAGC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TCATTCGCCACGAAAG	alt_3262_upstream	13	21	16	13	26	22	21	16	32	14
CTGCCCGACCCCCGTG	alt_3262_upstream	7	4	12	19	14	11	14	9	16	8
TGGAGAGTTATACGTG	alt_3262_upstream	11	29	14	5	14	12	9	9	23	8
GTGTTCGCGCCGAAGT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTACCTTGCGCTC	alt_3262_upstream	16	39	17	22	38	18	39	15	20	8
TCGATCGTTGCGGCAT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAAGGACTAGGTG	alt_3262_upstream	19	25	13	10	15	15	19	17	18	17
ACCGGGTGCCGCGGCG	alt_3262_upstream	4	12	4	7	17	12	12	3	18	4
TCGGAATCTCCACTGT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
AGGTAGATAGTCTAGA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAATGAGAGCCCT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TATCATCTTTTTTTTC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GATTGGCGTTCGTCCA	alt_3262_upstream	24	26	23	27	30	21	32	15	25	21
ACACCACGATACTTCA	alt_3262_upstream	35	44	42	36	46	22	51	22	41	22
CGGAGATTTAATCTCC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTGTCCGCAGGAA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAGGGGATTTTAT	alt_3262_upstream	3	10	1	6	4	3	7	5	4	6
GTTTACCGGCCGGCTG	alt_3262_upstream	3	3	5	3	5	3	5	3	4	1
CTCCTGCCGCTCCTAG	alt_3262_upstream	0	1	0	0	4	1	1	3	1	2
ATGCTACTTGGTAGCT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
AGTCGAGAGTTGGGAG	alt_3262_upstream	20	29	21	14	35	22	33	29	35	22
CGGCACGCAGATGCTG	alt_3262_upstream	15	29	20	20	27	25	35	22	23	20
GTTGATGTCCATCGGC	alt_3262_upstream	24	35	43	36	38	25	35	21	32	17
GTTTTGACTTGCTTAG	alt_3262_upstream	13	21	23	11	25	18	19	14	20	6
CGGGCAGTTGTCTTAT	alt_3262_upstream	0	6	1	1	2	3	5	3	4	1
ATCGGGCCGAAGACTT	alt_3262_upstream	9	22	4	11	14	1	11	13	18	9
TCTTATGCTGTTTTTC	alt_3262_upstream	0	1	2	1	5	0	5	2	6	0
GGATTGGCATCGCTGT	alt_3262_upstream	33	41	36	31	59	34	43	44	48	30
AGTATCCCCGGGATTA	alt_3262_upstream	25	65	25	28	55	17	55	15	58	15
AAGCAGCCAGGCGCAC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTTCGTTGAGCGA	alt_3262_upstream	16	28	12	12	19	16	17	12	20	7
CGTCTCTAAGAAGGTA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGCGAGAGGCGCT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCGTAATATGTTT	alt_3262_upstream	7	11	12	10	9	3	16	11	12	14
GATGCTTCGCAGGTAC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCCCGTCACCGAT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
AAAAGAGTGTACTTTT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GTCACATTATACCGGT	alt_3262_upstream	0	8	3	2	8	0	20	2	13	3
AGCGCTGACAGTATTT	alt_3262_upstream	19	26	13	11	20	14	17	11	20	6
GACTGCGAAATTTAGG	alt_3262_upstream	40	39	43	40	43	36	51	38	55	28
GAGATCCGCTTGCCCG	alt_3262_upstream	10	13	11	5	9	11	14	10	30	5
CACGGCGAGCGGCGGC	alt_3262_upstream	8	11	10	6	10	6	11	11	9	8
AACGGTCCATTGGAGA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GTATAGGTTATTCTAT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGCCGTAACCACT	alt_3262_upstream	54	79	64	67	67	62	64	63	93	47
CGAAACGTCCGGCTAT	alt_3262_upstream	55	106	62	70	117	57	126	73	121	39
TGGTCAAGGTTATCCC	alt_3262_upstream	26	38	37	33	37	26	37	29	30	22
GGTTACCTGTCTACGT	alt_3262_upstream	5	20	10	10	12	4	14	6	12	9
TATATTAAAGTAGTAC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTATTCGCGTACC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
CTATATATAGCCTTTT	alt_3262_upstream	73	131	113	94	110	76	116	50	142	64
TGTCTGCGTCACGCAC	alt_3262_upstream	54	43	79	56	23	58	33	54	35	39
CGATCCCATCCAGCGA	alt_3262_upstream	16	15	9	11	18	13	18	7	18	11
CAGCGCTCTGCATGGG	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGCTGTTTATATT	alt_3262_upstream	34	61	50	45	69	46	68	38	81	41
TATATGAGTATCGGGC	alt_3262_upstream	33	57	40	25	48	32	74	45	45	20
TTGCAATGCTATATTG	alt_3262_upstream	31	44	26	19	45	26	46	21	43	15
TATGTGCGGCGTTGAA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTCTATTTAGAAT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
CTCCAGTTACGTCACA	alt_3262_upstream	2	6	3	3	8	5	6	6	9	1
CATTCTGTACACTTTC	alt_3262_upstream	2	2	2	2	2	0	4	1	2	1
TGTGTTTACTAATCTG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATTCACAGTTGCGACG	alt_3262_upstream	29	39	34	29	30	22	30	16	25	13
GCTAACCAAGCTTGTC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTGATTAAGCCGCGAA	alt_3262_upstream	11	14	15	16	26	16	24	10	15	10
CTGGGCGCCTATATTT	alt_3262_upstream	5	11	5	4	14	4	10	7	13	9
AAGAAGGGCATGCAGT	alt_3262_upstream	37	49	38	21	35	31	38	25	40	29
CTATCCCCTCGAAACC	alt_3262_upstream	8	12	6	4	8	7	13	4	5	1
AAGCTCTGGTTAATAA	alt_3262_upstream	125	218	170	135	231	116	213	118	233	97
ATATGTCCATGGGATA	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTAATAACGGGAT	alt_3262_upstream	41	40	34	25	50	19	42	30	45	20
GCTACAGCCTTTACTC	alt_3262_upstream	12	13	14	7	22	13	16	7	20	11
TGTCGGTAGATTATAA	alt_3262_upstream	20	38	45	26	32	19	36	18	30	25
CTTTCGATAATAGCAG	alt_3262_upstream	35	64	55	27	58	39	86	32	56	36
TGGCGAGTGTTAACGC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTCACGGCAGTGGGCA	alt_3262_upstream	0	5	6	7	8	5	4	2	9	5
TAGTCGCGTAACATTC	alt_3262_upstream	136	208	173	145	209	135	240	145	223	144
TAACCATGCTAAATTT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCAGGGGCTCTTC	alt_3262_upstream	58	84	56	56	121	30	97	41	101	44
GTGCCAGTCGATTTCT	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
CCATCCGGAAACTAGA	alt_3262_upstream	14	24	23	23	35	21	37	18	31	13
TCGAGAGTGGAGTCCA	alt_3262_upstream	52	64	55	52	62	42	78	48	89	41
GGTCTCGCTCGGAACA	alt_3262_upstream	130	192	174	157	204	122	170	100	197	128
CCAGTGCTGTGTATCA	alt_3262_upstream	7	17	8	5	23	8	39	7	29	3
ATTTACTGGGCTTACG	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGACTTCCTCGGC	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTTACACCACGA	alt_3262_upstream	30	45	25	25	42	23	42	16	21	19
GCAGGTTGTTGCATTA	alt_3262_upstream	17	27	17	10	36	12	34	15	35	14
ACTCTCTTCTCGTGCC	alt_3262_upstream	15	16	20	12	25	8	22	13	28	16
TCTACGGCGTCTATTT	alt_3262_upstream	8	11	8	13	9	4	6	5	4	3
CTGCGAGGAGGTTTTG	alt_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCCGTCTGCAGCA	alt_3262_upstream	7	13	8	7	19	3	14	7	12	13
CGGAGCCTTTAATTGG	alt_3262_upstream	11	7	11	13	13	7	13	6	9	6
TTCATAACCGATCTTC	alt_3262_upstream	10	12	12	12	19	10	11	6	8	10
ATTCGTGTACGTTTCG	alt_2783_RC	13	15	18	10	6	20	6	14	15	8
TACAGTACAGTTGCTC	alt_2783_RC	39	36	51	35	37	44	40	42	35	45
GACGGGCTACTTGTCA	alt_2783_RC	161	135	184	151	163	151	148	148	162	111
GGGATTATAGTTGAGC	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
AGTCCATGTATTAGGA	alt_2783_RC	116	66	129	108	97	101	65	86	79	99
TGTCCAGGCCGTATTA	alt_2783_RC	66	63	74	64	78	58	75	67	63	56
CTTGAAGCTTGGGCAC	alt_2783_RC	8	5	14	11	9	5	6	15	7	10
ACTTATGTGTATCCGT	alt_2783_RC	130	112	162	118	107	116	105	127	130	97
CAGTATGATCTAAGGC	alt_2783_RC	67	46	74	56	57	47	60	49	52	41
ATGACCTGGTGTCTAC	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
CCGACTCGCATGAGCA	alt_2783_RC	33	25	34	45	35	40	43	34	32	42
TGATTGTTAAGACGAT	alt_2783_RC	115	78	126	113	76	117	94	93	72	84
ATTAGGGTGTCACAGG	alt_2783_RC	38	45	77	65	48	42	46	68	45	45
ATCCATAAGAATATAA	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TTTGTTAGAATTCGCT	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TCCGAGCTTGTACGCC	alt_2783_RC	31	24	34	46	30	37	21	26	28	25
TGGTTAAGTACGATCT	alt_2783_RC	60	60	101	78	66	78	75	66	69	66
GGTGAGTGAAAGTCTT	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
ATTAGTAGATAAGATT	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
GAGATCTACTTAACGG	alt_2783_RC	21	16	30	23	18	24	16	18	9	18
ATCTCTTGAGCGCTTG	alt_2783_RC	18	22	14	19	13	10	9	13	16	21
GCTTTTCGTGCTTCCA	alt_2783_RC	25	13	21	18	15	20	14	21	10	13
GTATCCTTAGTGGTTT	alt_2783_RC	14	15	17	14	11	12	13	9	12	15
TTTTCCGAAGGGCTAA	alt_2783_RC	22	21	28	23	22	33	25	37	19	26
CTCGAGCGCCCGTCAG	alt_2783_RC	63	59	99	66	49	60	52	61	44	55
GCTTGTCTTTGCCGAC	alt_2783_RC	6	9	7	10	6	7	14	5	9	8
ACCTGTACTGCTCATC	ref_2783_RC	334	332	435	411	351	347	377	339	350	309
GTCTCGCTTCCACCCG	alt_2783_RC	26	23	38	34	36	26	42	37	25	29
TTAGTGTATTGATACA	alt_2783_RC	60	55	70	62	58	61	47	46	63	45
TGTTGGGTTCTGGGTG	alt_2783_RC	92	69	68	61	71	88	65	79	73	75
TTTGTATTATTCTTGT	alt_2783_RC	35	22	40	39	29	52	24	44	24	44
TCGGAACTCAACTCCT	alt_2783_RC	101	66	107	95	78	86	109	83	84	88
CACTAAGACCACGCCT	alt_2783_RC	39	33	51	68	60	47	66	48	47	39
GTCAAAACTCGTTATA	alt_2783_RC	334	277	489	390	313	329	282	331	268	327
CGTGGCATTTCTGCCT	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
ACTTAGGTAGTGAAGG	alt_2783_RC	54	40	55	55	43	52	60	49	56	56
AGGCTAATCCTGCGAG	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TTCATGTATATCCAGA	alt_2783_RC	19	20	33	25	19	19	15	25	14	13
TCGACTATTTATGTGT	alt_2783_RC	32	35	50	53	44	40	43	23	41	29
CTCGGAAAGCCGCTAG	alt_2783_RC	44	48	71	43	41	33	58	51	44	51
GGGATTTATGTTGCAA	alt_2783_RC	34	37	44	42	39	45	37	43	30	34
GCATGCCTCGGATACG	alt_2783_RC	12	6	20	14	11	21	5	11	20	8
CGGTCCCGTAGGTGTC	alt_2783_RC	44	31	25	31	32	34	27	29	27	21
AAAACCTGCGTCGCAT	alt_2783_RC	401	309	510	418	334	355	326	411	331	335
TAAGTTACACGTGTCA	alt_2783_RC	5	18	13	12	8	16	16	16	11	21
TATCGTGTTGCTTTAG	alt_2783_RC	7	6	3	12	12	1	6	5	8	3
CTCACACAGGCCCGGT	alt_2783_RC	50	47	84	64	53	45	40	50	45	54
AATCTGGTAATTTTTA	alt_2783_RC	102	65	136	121	59	77	93	99	62	88
GAGCAGAATCCCCCTT	alt_2783_RC	126	109	166	121	87	130	88	135	94	109
TTATATAGTCGTCTCT	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
CCTCTTGTTCCATTTT	alt_2783_RC	82	83	119	116	80	103	101	95	86	87
CCGTCCGTTCGACCCA	ref_2783_RC	17	21	20	25	20	23	21	14	16	11
TTGCTGCGATCCCCTG	alt_2783_RC	42	23	43	41	35	40	38	34	40	20
ATAGACATCGCGATTG	alt_2783_RC	34	30	49	39	48	38	36	48	40	37
CTTGGCGAACTCACTC	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCGAGTAACCAG	alt_2783_RC	322	281	362	334	307	271	327	313	315	259
ACAACTCGTATCTCTC	alt_2783_RC	16	12	13	19	17	20	15	18	12	9
CTGGACGGGCTGTGCC	alt_2783_RC	17	12	15	9	18	11	20	7	16	6
GTATTAGACGTACCAG	alt_2783_RC	33	39	43	46	26	36	21	39	41	37
TTGTCTACCCACTGTT	alt_2783_RC	33	18	50	36	14	34	15	29	26	23
TCCATCGATTACTGTC	alt_2783_RC	176	143	214	165	134	183	150	177	133	148
GTTTCTATAGTCTCCA	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
AGGGTCCGCTGTGATT	alt_2783_RC	26	13	24	23	23	19	13	29	15	21
GGTGCACTTGGCGCCT	alt_2783_RC	0	0	2	0	2	3	1	0	1	0
TCCAGCCCCTCTATAC	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
CAGCTACTTATAATGT	alt_2783_RC	28	45	65	46	36	42	63	33	44	26
AAAAGGTATTCTACGT	alt_2783_RC	12	9	17	12	8	17	10	18	11	8
CTCGCACCTTGCGTAG	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
CTAGGATCCTTCGTGG	alt_2783_RC	8	14	9	12	11	10	6	9	10	7
TATATAGGTTTCTTTG	alt_2783_RC	60	63	62	60	38	57	47	50	67	39
TGTACTAGACGGTACA	alt_2783_RC	30	16	37	46	25	22	25	34	13	17
TATCAAGAAATCATGA	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TATTTATACGTTCGCC	alt_2783_RC	50	65	75	59	37	44	50	65	51	45
TAAGTCAGACATGGAT	alt_2783_RC	45	37	43	54	39	40	25	35	24	29
TTTTAGGTTTCATTTA	alt_2783_RC	81	68	116	111	80	106	84	93	78	83
TATAACGGGGGTTGTC	alt_2783_RC	50	44	88	49	44	45	38	53	39	50
TTGCAGCAAGACGCTC	alt_2783_RC	35	28	63	39	30	44	42	42	40	25
TAGCTCTGGATACGCT	ref_2783_RC	137	105	149	109	119	118	119	131	119	136
AATTTCACCGACGCCT	alt_2783_RC	112	101	129	127	107	111	89	109	82	84
ACTTGGGACATTGCTC	alt_2783_RC	46	32	31	37	25	37	34	35	24	38
CATATGTCCTGTCTCA	alt_2783_RC	135	100	168	147	97	124	115	142	88	111
TCTCGTTTATGAATGT	alt_2783_RC	36	45	45	40	52	45	50	36	53	28
CGCTAGGAGCCATTAT	alt_2783_RC	19	19	16	23	21	20	23	14	13	15
TGGTCTCGACGTTGCG	alt_2783_RC	121	69	131	146	79	104	91	123	82	131
CCTCCCACCAACGTTG	alt_2783_RC	30	32	36	22	22	35	29	26	26	25
TGTCGCCACGATGTCT	alt_2783_RC	45	24	87	65	45	49	30	50	28	50
GTGTTACCGTGTGGCA	alt_2783_RC	132	63	107	139	108	114	94	114	101	103
ATGTTTGTAACACTTT	alt_2783_RC	119	69	116	125	69	98	83	91	102	80
TCCCAATTGGTCTCAT	alt_2783_RC	35	30	30	53	47	32	43	34	45	31
TTGTTCCCTCTCAATG	alt_2783_RC	6	7	3	3	4	3	6	2	3	2
CTCTAAGGAGTACTAT	alt_2783_RC	37	24	22	17	32	35	24	27	29	24
CTTCATCCCTGGCGCA	alt_2783_RC	80	69	77	32	57	58	61	54	51	65
CATTGGTAGTATGTCA	alt_2783_RC	37	20	52	26	35	32	29	26	29	17
GTCGGTAATGGAGTGG	alt_2783_RC	95	59	101	103	59	70	65	87	77	67
CCCCTGTTCGTACCTT	alt_2783_RC	27	19	29	20	28	17	26	41	31	24
ACCGTGTACCACAGCT	alt_2783_RC	9	5	6	8	1	10	6	11	7	3
CCATTTCAACCTAACA	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TCTCATTCGCGAAATG	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TTAATGGCTATTTTCG	alt_2783_RC	47	49	83	83	56	63	34	72	57	44
ACCGATATAGGGACCC	alt_2783_RC	36	25	50	33	21	33	31	34	31	40
TTCTCATGTGTTTCTG	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
TTCAGCTGGCACGGGC	alt_2783_RC	51	79	90	78	73	74	88	68	76	65
TCTTGGGAAATTAGTC	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
AAGTAATGATTCTACA	alt_2783_RC	78	69	93	72	67	66	65	73	50	65
ATTGAGCGTTATCCGC	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
GAAGTTGTTTTGCCCT	alt_2783_RC	42	28	53	43	48	42	34	34	35	22
TGAGTTTACGTCTCAG	alt_2783_RC	12	14	24	20	10	26	16	19	19	11
CCAGCTTGTCGTCTGA	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
AACCTTGTGTTTTCGG	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
GGAAATCTACCTGCAG	alt_2783_RC	0	0	0	0	0	0	0	0	0	0
CTGTTGGAAGCTTTCC	alt_2783_RC	77	76	79	113	65	72	75	83	85	72
GAATGCAGTGTTCAAT	alt_2783_RC	156	125	198	153	118	161	117	151	133	164
CACGACTGCTATTATT	ref_5268_RC	56	64	65	59	74	40	72	56	74	48
GTGTAGGGCTGCTTTC	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
GACTTGACACCCTCCT	ref_5268_RC	38	56	34	50	43	25	40	30	51	31
TTTGTCGTCCATTCTT	ref_5268_RC	37	16	35	27	20	20	32	30	33	26
TGTATATTGTACTGTG	ref_5268_RC	28	35	34	26	42	32	40	24	45	30
TCAAGTAATGTGTATC	ref_5268_RC	17	22	26	24	30	20	17	26	37	11
GATCTAGTGGCAGGTC	ref_5268_RC	15	14	8	17	13	11	11	12	20	4
ATGAGCTGGCAGTCGT	ref_5268_RC	43	32	41	51	33	28	32	34	53	26
CGGTCTCTCGGACTGC	ref_5268_RC	194	206	221	211	204	180	192	180	217	154
CAGGTATGTCGAAGCG	ref_5268_RC	61	90	113	77	74	81	83	72	88	61
GAGCATTGTTGTAACA	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
ATAGATTTCATTCCGG	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTCATGGTCTCG	ref_5268_RC	6	22	20	16	9	12	16	8	22	14
CCTATTTGCCATCTGT	ref_5268_RC	0	0	0	0	1	1	0	0	0	0
TTAGAGATAAGCCTGT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CGACATTGTCTACAAG	ref_5268_RC	73	75	70	52	80	53	66	48	70	43
GCTGCCGAATATGCGA	ref_5268_RC	66	71	93	68	70	63	58	73	75	41
AAGAGTCTAGAACAGT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
AAGTTAACCCGGCCTA	ref_5268_RC	12	23	22	14	14	19	13	15	12	18
GGGGATCACTACCCAG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TAGCACTCTGTAGAAT	ref_5268_RC	6	15	7	8	10	11	11	6	8	6
AAACGATCCCACCCCC	ref_5268_RC	126	109	187	119	135	118	135	134	154	116
CTGTTATCGCTACTGC	ref_5268_RC	38	45	64	61	44	43	52	47	64	37
GGCTTGGTGTGCTTTG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TTAACGTATGACATGG	ref_5268_RC	37	33	44	34	29	27	38	29	32	34
CGGACCCGGATGGAGT	ref_5268_RC	99	94	135	128	131	89	123	129	110	95
TGCACTTTCCATTATA	ref_5268_RC	52	50	61	49	41	40	41	36	50	35
ATACTGTCTTGTTTGG	ref_5268_RC	89	119	101	109	89	85	119	95	108	74
GGACTATTTTTGGAGT	ref_5268_RC	2	18	13	8	9	6	11	7	10	7
CATTTCTTTTTGGTAT	ref_5268_RC	16	21	31	28	18	22	26	30	33	29
CGGTACTCTCCACCCA	ref_5268_RC	3	2	5	8	8	3	13	7	13	6
CGTACTCATGAGATAT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
ATAGAGATAAGCCTGT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
GTCAACTTAAACGGTT	ref_5268_RC	27	28	35	11	35	22	21	20	29	11
GATTGTCAGTGACACG	ref_5268_RC	9	34	21	17	17	15	12	7	32	16
ATAGCGTTTCTTTCGC	ref_5268_RC	20	29	32	24	30	23	31	19	43	23
TGGTCGCATCGTTTAT	ref_5268_RC	2	7	5	6	3	7	3	4	3	3
TTTCCTTGGTGGTATT	ref_5268_RC	26	17	27	17	21	17	25	16	21	16
CTGCCTTATTTGTGTA	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
TCAGAAGTTTTATTGA	ref_5268_RC	11	11	16	7	15	14	14	7	22	5
CTTCAAAGGTTACTCT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGTTGACTAGGA	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
GGAATAGTTTTTTCAA	ref_5268_RC	3	10	3	5	4	4	2	2	7	6
TAAGACTCTAAACGTT	ref_5268_RC	9	14	9	10	7	10	7	7	17	11
AATGTTCTTACCCTAC	ref_5268_RC	23	33	25	25	34	20	36	17	28	20
TGTAGCTTTCCCTCCT	ref_5268_RC	31	29	47	36	53	27	57	33	39	37
AAAACCAGTGTTAATC	ref_5268_RC	47	57	43	40	39	36	64	39	55	33
TCCTCTGCATTTGGAT	ref_5268_RC	29	56	57	46	58	39	60	34	72	40
CTAGGCTGCGAACGTC	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
GCTGCTATAAAGTCGT	ref_5268_RC	189	241	258	226	267	209	265	209	283	186
TTTTAGTTTTGCTAAC	ref_5268_RC	3	13	3	2	4	6	10	10	7	4
TTCATATAGGTTCTCG	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
ACTCTATGTGGGAAAG	ref_5268_RC	46	77	53	57	63	53	71	47	63	44
GGTTCCCTCACACCAG	ref_5268_RC	5	0	0	1	3	2	1	3	5	2
GTCCAACAGCCCCCTC	ref_5268_RC	45	38	50	32	48	29	56	52	62	37
TATATGAAAACTATCT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CCTGGAGTCTCGGGGA	ref_5268_RC	61	47	65	58	45	69	48	44	60	44
GAATTTTATTATTCCG	alt_5268_RC	136	145	158	147	159	138	184	138	182	133
TAAGCAGGTCATTTGT	ref_5268_RC	14	15	13	13	8	13	18	11	14	11
CACCGACCCACGTGAT	ref_5268_RC	24	44	38	28	41	32	40	33	55	31
GTGGGAATGAACTTTT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
AATTACTGGGGGGCGG	ref_5268_RC	51	70	71	41	65	64	60	50	61	63
TGAAAACTCAATAAGT	ref_5268_RC	91	113	113	81	111	71	106	93	105	88
CTCACCTCACCATCTA	ref_5268_RC	53	83	91	58	75	60	109	61	89	42
GTACGGTCTTCTTTGT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CCGTTCCGCCAAGGTC	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CCGACGCGTATGGTTA	ref_5268_RC	32	34	38	24	31	40	40	27	42	32
AAGGGTAAGGATTTAA	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
TCGGATAGCTCAGTCC	ref_5268_RC	48	55	63	41	63	43	42	32	58	30
TTGAGCACTATCACAA	ref_5268_RC	65	96	71	59	93	45	100	69	88	67
AACACTACGATGTAGG	ref_5268_RC	50	59	53	57	70	50	61	51	85	48
TTTTGCCTCTTTGATA	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
AATTTGTTATGGCCCT	ref_5268_RC	4	4	8	3	4	2	9	3	5	9
ATCATGGTGACAACTC	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CTGTCTTAGTCCGTAA	ref_5268_RC	29	54	35	23	44	22	44	31	26	33
CTCCGGGTTTTTTTCA	ref_5268_RC	33	24	47	34	42	32	19	24	39	22
ATCCATTTAACTTGAA	ref_5268_RC	34	31	31	38	30	39	39	34	30	30
TTAGGTTCTACATGTC	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
GGCCTCGCTGCTCAGG	ref_5268_RC	28	26	22	19	27	24	35	24	31	14
GTGGAATCGGATCGTT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CAACGGGCCTCTGGCT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
GAGTTTTGCTCGGGGC	ref_5268_RC	20	27	21	15	20	21	16	7	21	12
TAACTATACTAATCGC	ref_5268_RC	5	7	5	5	4	4	4	4	11	5
GCCCAATGGGGTTATA	ref_5268_RC	47	51	52	54	50	45	60	30	55	34
TGATTCTCTGAGGTAC	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
TCCCGGTTCTGAATTA	alt_5268_RC	36	56	48	42	52	33	55	37	58	23
ACACTGGTCCGCGCGT	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
TGGATAGTTCCTAAGT	ref_5268_RC	115	148	121	95	191	93	193	124	153	104
TTATTAATTCGTAGTA	ref_5268_RC	5	12	13	9	10	19	8	17	15	9
TTCCTTTCGCGCCCCC	ref_5268_RC	51	61	77	76	74	81	77	86	78	56
ACTCGCCCTATTGGGG	ref_5268_RC	17	17	19	19	21	13	24	13	22	10
GGAGAGCCTGACTATA	ref_5268_RC	20	18	17	14	32	24	21	10	14	10
ATCATGCTGGTGTATG	ref_5268_RC	57	63	70	58	81	44	71	43	61	41
TGTGAAACGCCTGCTA	ref_5268_RC	102	111	112	101	124	90	114	95	125	84
TTTGTTGTTACCAGGC	ref_5268_RC	51	50	68	51	51	43	54	43	63	32
GTCATATCCATTTGCA	ref_5268_RC	39	29	51	47	44	28	29	24	34	35
CTGCCATCTTGTACAC	ref_5268_RC	3	1	2	0	6	1	2	1	3	1
GCCACAGTTGTGCCGG	ref_5268_RC	2	1	0	0	2	3	1	1	0	0
TAATGACACTCCGTAC	ref_5268_RC	7	6	5	2	3	3	14	2	4	3
ATCTTTCTCTTCTAGA	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
CTTAGATTGTTCCATG	ref_5268_RC	9	12	19	3	2	4	10	4	5	5
GTACGACTCCACAATG	ref_5268_RC	13	22	8	13	13	8	25	13	30	7
AGTAATTATCGCTGTA	alt_5268_RC	8	10	7	5	13	7	8	10	8	12
AAACGATCCCCCCCCC	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGCCCGTGCTTA	ref_5268_RC	13	24	20	16	16	12	16	14	15	12
AACGGCACAGGCCTGA	ref_5268_RC	11	9	14	11	6	7	5	6	6	9
TTGATTGCAGAGGAAG	ref_5268_RC	50	57	82	63	59	72	85	40	90	63
TTTGTGGTCCTTCTTG	ref_5268_RC	0	0	0	0	0	0	0	0	0	0
TTCGGAAGTACGAGCT	ref_5268_RC	35	26	37	39	28	24	34	26	27	24
GCTGGGAACTCGTTTG	ref_5268_RC	76	104	107	99	84	65	89	91	103	78
GGACCGGGTGCAGGTC	ref_5268_RC	51	45	44	41	55	36	57	45	67	39
TGCTCCTGGATTTTCA	ref_5268_RC	29	48	47	27	42	27	33	50	39	36
GATTCCGCGCAGCCGC	ref_5268_RC	188	157	235	175	149	158	165	161	138	135
GATCCAGGCGAATACA	ref_5268_RC	82	81	92	65	72	69	89	62	83	54
TTCGTTTCAAAGATCA	alt_6105_new	150	334	154	136	367	122	360	123	330	137
TCAGTCTCGCCAGCTC	alt_6105_new	6	12	3	10	10	2	13	6	17	2
CGGATTGGGTCGCGTT	alt_6105_new	8	9	8	7	8	5	10	3	14	2
CTTGCACGAGTTCTTT	alt_6105_new	1	7	8	3	12	4	4	0	6	3
CGATCCCACAAAAATT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CGAATTTGGCTGTGGT	alt_6105_new	5	21	9	6	19	8	25	4	25	4
TAGGCTGATCCTGCGT	alt_6105_new	28	75	65	38	80	38	88	26	77	33
TGCAAGTCCCAACGCA	alt_6105_new	20	38	19	12	40	10	35	8	35	13
TTCAAAGTTTGATGTC	alt_6105_new	1	9	1	3	3	3	4	6	7	0
GGCTCATGTGCTATTT	alt_6105_new	3	9	13	4	5	3	7	2	10	1
CTAGCGGTCCATTTTA	alt_6105_new	20	40	22	15	46	9	68	18	66	13
GTTCTAACTCGGGACT	alt_6105_new	5	9	3	2	14	2	9	2	21	4
ATGATGCACTTCGCAG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GTTACATAGGCCACCT	alt_6105_new	1	4	2	5	6	2	7	1	4	3
CGTCCGCTCATGCCAG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CCACTGATAGCAGAAC	alt_6105_new	12	45	19	11	44	17	59	16	33	18
GGAAGCATTTTTCATA	alt_6105_new	1	5	3	7	5	5	4	3	7	1
AACACATCGTTTCAGT	alt_6105_new	45	106	50	37	103	56	106	30	130	34
ATTGCGATTGCATGGT	alt_6105_new	2	8	5	2	4	3	2	5	5	2
GGACCTTGTAATGATC	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TCGTTGCATAGCATAT	alt_6105_new	8	9	1	4	12	2	5	0	5	1
TCGTCAGTGCTGTATA	alt_6105_new	6	11	1	1	7	0	11	2	15	2
GGGTCCACCTGCCCAG	alt_6105_new	15	26	12	19	32	6	30	12	34	4
CAACACCCCTCTTCCT	alt_6105_new	4	3	5	5	10	6	10	5	10	3
ACTGTGCGCCGTGGTA	alt_6105_new	5	6	11	4	4	6	17	6	11	3
GCAGTGTTTGGAGTCG	alt_6105_new	1	5	1	1	1	1	8	1	4	1
ATACCCGTCCACTTAA	alt_6105_new	2	3	6	4	14	2	6	4	10	5
CGGCACCAATTTCTGC	alt_6105_new	7	17	5	4	18	3	22	2	19	4
CATTGTGCTTGTCCTA	alt_6105_new	5	18	8	5	21	2	31	7	15	3
AATGCCTTTATGCATT	alt_6105_new	2	6	3	3	4	3	4	0	7	2
TATGTTGTTGGTGCTC	alt_6105_new	8	26	9	8	14	5	26	5	21	6
ATTGTGATAAGCAGAG	alt_6105_new	29	54	30	17	62	27	61	12	67	29
ACATACATGTAGTTCT	alt_6105_new	33	79	29	25	69	24	89	19	87	40
TTTTAAACGATCAATC	alt_6105_new	14	31	16	16	29	9	41	11	25	11
ATCTTGGGAAGGTAGC	alt_6105_new	61	145	70	59	158	41	164	47	134	53
GAGTCATTTGCTAACG	alt_6105_new	12	30	7	3	25	8	22	2	17	6
CAGAGATTCGGCTACG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
ACTTAGTCTCCCAAGC	alt_6105_new	6	19	4	1	15	3	14	4	14	7
ATCTGCTAGTGGTTAA	ref_6105_new	7	25	14	5	23	15	29	4	27	8
CCGTTCTCTGCATCTT	alt_6105_new	4	48	3	6	66	4	41	4	42	6
ATTCATCCATCGTATC	alt_6105_new	37	66	38	42	62	33	57	23	71	22
CCGTCGAAGATGCCTA	alt_6105_new	0	11	1	5	16	1	20	3	17	3
TTGACGCCAGGAGCGT	alt_6105_new	5	17	9	11	18	11	20	6	19	6
AGGTGGACTTTGGGTC	alt_6105_new	1	0	0	0	4	1	1	0	5	0
GCGAGACACTACGTTT	alt_6105_new	6	6	2	2	6	3	8	1	7	3
CGATCATAACAGGCTA	alt_6105_new	12	28	13	13	38	16	33	13	34	12
CGGTTTGAAGGTTTTA	alt_6105_new	2	16	3	4	5	0	8	7	9	3
GGCCTCCAGTTGAAGG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
AGTTAGACACAGCAAA	alt_6105_new	6	29	10	2	24	6	18	20	24	2
ACACTCGCCAATATGG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTTGGGGCGGC	ref_6105_new	15	42	23	19	24	16	21	13	30	17
TGGTTGGACCTTACGT	alt_6105_new	7	41	23	14	33	13	31	16	36	13
GGATCCCGATCTATGA	alt_6105_new	6	17	7	5	16	6	12	9	26	3
GCAGTTAACTAATCAC	alt_6105_new	20	40	19	15	61	19	45	25	42	15
ACCTTAGCCTGAAGAC	alt_6105_new	3	13	6	3	13	4	13	3	17	4
ATCTTCTGTTTCAATG	alt_6105_new	0	4	0	2	4	0	3	1	3	1
AAACACGATAACAGTT	alt_6105_new	20	60	29	37	66	24	82	22	69	32
TCGGGCCAATGCAATC	alt_6105_new	8	24	4	5	30	4	19	5	24	9
TACGCACTTTAGATGT	alt_6105_new	44	92	42	38	82	46	87	43	95	25
CCATCTTAGGTCCAAA	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CACCTCGCGTTGATAG	alt_6105_new	13	41	21	23	40	21	55	16	48	21
CGCTAAACACCCTTCG	ref_6105_new	6	11	5	2	18	7	15	4	3	6
GGATTATCGGACCACC	alt_6105_new	10	20	13	16	37	13	28	12	42	8
GAGCCAGACATTTTAT	alt_6105_new	16	17	15	15	20	4	14	9	16	6
AGGTAATATAATGGTT	alt_6105_new	6	18	0	5	17	6	13	11	15	4
TTCAGCATTGAAGCTT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GAGCCTGGATCTATAA	alt_6105_new	7	8	3	3	10	5	14	4	7	2
CGGTCTGGCCTTTTAC	alt_6105_new	0	3	2	1	4	1	9	0	3	0
CATGCAGTCTTCTCGC	alt_6105_new	5	17	9	4	11	3	15	8	16	7
ATTCATCCATCGCACG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GACTCCCCCCTGTAGC	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GCCCTATACCGAGAAG	alt_6105_new	18	45	14	19	43	13	48	10	41	15
GCTGTGATTCCACTTG	alt_6105_new	8	10	7	3	19	4	13	3	11	4
ACACCGTGCTAATCGA	alt_6105_new	4	23	7	11	21	10	24	13	16	10
ATTGGTTTAGTGTTTA	alt_6105_new	16	27	12	10	40	11	33	4	29	8
CCTCGGTGGGTTATCT	alt_6105_new	1	2	4	1	3	4	8	3	10	1
GTACGTAGGACCGCGT	alt_6105_new	0	10	10	4	9	5	12	7	16	7
GCCGCTCGCTGCAACT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CCTTACAATAACAGTC	alt_6105_new	24	64	18	16	60	15	68	22	50	13
TATGATTACTTGGTGT	alt_6105_new	2	7	2	4	9	5	10	5	3	4
GGGAGCCTAGCATCAC	alt_6105_new	6	19	9	5	20	10	41	7	26	11
ATAAAACATGTTATTG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CCTTGTAGATTCTAAG	alt_6105_new	9	26	16	13	41	12	41	13	39	15
CTATTACATTAACGTA	alt_6105_new	12	22	11	12	16	3	20	9	15	5
CAAAGTTCAGTATGGC	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TCTTTCTCTGAGTGGG	alt_6105_new	19	60	21	25	63	20	59	29	68	31
GTAGCAATTCATCACG	alt_6105_new	78	25	106	79	25	86	38	64	34	59
TATGGGAAGTAGGATT	ref_6105_new	13	37	21	20	34	13	45	12	25	8
ACGTTGGTACACAAAT	alt_6105_new	8	25	5	8	11	3	13	10	17	7
ATTCATCTTTGCATTT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TTTCTTTCCCACCTGT	alt_6105_new	4	17	18	9	19	8	28	2	25	8
ATGTCGTAGGCGTGGT	alt_6105_new	6	16	10	10	8	12	21	6	15	7
AGAAGTGACATATTTA	alt_6105_new	9	45	21	26	41	18	38	20	40	21
TTAGTCATATATTTGT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
ATCGTTAGACTTCTTA	alt_6105_new	6	23	17	23	39	20	47	10	28	11
TGTGTCCACTTATTAG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GAAGCTCCGCCGGCCT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CTTTCTTTTACGCAAG	alt_6105_new	37	75	22	31	83	24	61	26	70	22
GTTTTTCATTTTGAGT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TTTTTCGGACTGAACG	alt_6105_new	38	107	32	35	118	22	133	30	128	24
CCTTTCTCCTAAGTGG	alt_6105_new	1	50	9	12	38	7	36	7	45	18
CATTGCTCGCCAACTG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GTTCACGCTAACTTCA	alt_6105_new	10	37	18	6	41	15	34	13	41	10
GTGTTTCGGATCGCCT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TCCCCCTACCTCCTTC	ref_6105_new	7	16	11	6	21	6	12	6	20	7
TATCTTGTGCCAGTCC	alt_6105_new	0	0	0	0	0	0	0	0	0	0
ACCGTTGCCAGTCGCG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TAATGGTTTTGATGAG	alt_6105_new	53	107	50	36	114	44	110	43	114	46
CACCCTGTTTTCATGT	alt_6105_new	47	110	52	60	116	46	137	40	126	37
ACATCCGCCTGCGGTG	alt_6105_new	10	41	14	18	38	16	40	14	38	12
AACACACATACGAGTT	alt_6105_new	17	40	26	13	55	12	58	16	42	16
AATATCAGAGCCCAGC	alt_6105_new	0	0	0	0	0	0	0	0	0	0
ATTAGGTGTCCGAGTG	alt_6105_new	10	51	17	9	33	11	60	12	34	16
GGTTACTTCAGTTAAG	alt_6105_new	19	26	17	12	38	13	36	15	35	7
GCGCTTTATATACCGC	alt_6105_new	2	5	2	0	8	2	14	2	5	2
AGTATTTCATGAAGCA	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GTCTTTCAGATAGAGT	alt_6105_new	0	8	2	4	6	4	6	3	2	2
GGGGGAACGGGCTAAT	alt_6105_new	33	89	42	42	104	25	106	33	94	29
CTGATTACCACCCTAG	alt_6105_new	3	8	2	4	6	3	20	4	11	2
GGCGTACGACACGTTT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GTCCGTTATTTTTCTT	alt_6105_new	3	2	2	3	3	0	5	7	3	3
GTTGCATCCGGAGTTA	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GCCGAGCGGCCCGGGG	alt_6105_new	49	112	43	31	116	40	83	32	103	44
ATTAAGCATCACCCTT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GGCCATATGGGTCTGA	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TTCACAGTACAAGAAC	alt_6105_new	5	14	6	5	11	8	11	2	19	2
TCTGCGCCCTCTTTCT	alt_6105_new	36	66	32	21	85	29	81	27	80	28
ACTGGCGGGACAGCGC	alt_6105_new	0	9	1	1	13	2	11	1	11	3
CTCTATGTGCAGTATG	alt_6105_new	2	14	7	3	31	7	32	5	27	3
CTCGGGGATATTTTTA	alt_6105_new	2	15	8	5	33	4	33	5	8	4
CGCATCTTTAGGCCCG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CGATCTTCTTTGTCAC	alt_6105_new	66	123	68	61	143	65	175	58	169	60
CTACGATATATCGATT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TTCTAGGGAATCGAGA	alt_6105_new	0	0	0	0	0	0	0	0	0	0
ATGATTAGCACTACGC	alt_6105_new	1	2	2	0	3	4	4	0	2	1
CCCCGTTCTGGACATC	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CGCGACACCGACAATC	alt_6105_new	17	38	23	14	56	15	61	18	46	22
TCGAAGCGCCACGAAT	alt_6105_new	7	15	11	4	18	7	19	6	20	9
TACCTTGTCGTGAGTT	ref_6105_new	43	132	65	41	137	53	132	42	126	45
AGTCGGTCGCTGGATG	alt_6105_new	9	24	9	10	15	8	22	10	21	15
CCACATAGGTCAACAT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
AGGAAACATGATTGCA	alt_6105_new	8	33	12	7	34	10	22	9	29	10
CTGTCTCATTTATCGT	alt_6105_new	1	4	7	3	14	5	8	1	8	3
TCAGGATGTTCACTGC	alt_6105_new	0	0	0	0	0	0	0	0	0	0
CGCGCAGAGACGTCTG	alt_6105_new	9	29	8	9	29	2	22	8	25	17
GTTCTCCAACTTAGGC	alt_6105_new	13	16	6	3	17	4	23	6	23	2
TAGTGCGCGCTTCAGC	alt_6105_new	47	82	39	42	85	34	121	47	138	33
TAGTGAACCAGCTCGG	alt_6105_new	0	0	0	0	0	0	0	0	0	0
GCCTTTTTTAGGCAGT	alt_6105_new	0	0	0	0	0	0	0	0	0	0
TGGCGAACACGCATAT	alt_6105_new	1	2	1	2	3	2	4	4	9	4
TGTTCATTCGCATCGA	ref_3238_RC	12	9	8	11	9	4	11	3	9	1
TGAATTTGGCGGTGCC	ref_3238_RC	18	25	11	13	15	16	19	9	23	22
TGTGTCAACGTAGAAC	ref_3238_RC	35	71	47	29	42	32	38	34	45	28
CTCTATAAGTGCAGGC	alt_3238_RC	207	351	282	219	336	222	377	204	350	199
TTGCTCTCATACGGGT	ref_3238_RC	17	17	29	26	23	14	19	18	26	21
CTTAGCCTACAGTTGT	ref_3238_RC	9	27	20	18	25	16	21	20	26	7
CACTTGTCGTCAGCGC	ref_3238_RC	13	30	19	11	23	6	40	14	32	6
CGCCCTTCGGAACTTG	ref_3238_RC	21	25	27	26	30	17	19	24	25	18
GTCTTCTTACAGATCG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
AAGAAGTTTTAATTTT	ref_3238_RC	2	6	1	2	3	1	6	12	3	1
GCGGCTCTCTCCTCGT	ref_3238_RC	52	56	60	43	52	47	67	47	60	35
GTGCGGTCTCTCGGAC	ref_3238_RC	28	43	58	39	39	60	53	39	51	40
GCAGGTTACAACATGC	ref_3238_RC	143	138	175	180	124	129	149	139	166	118
GTTATGGAGCGTGCTA	ref_3238_RC	4	13	22	15	10	13	21	18	13	12
CTATTAGAGGGCGTGA	ref_3238_RC	18	31	19	17	16	21	29	17	26	19
TAGATGTGCCCTCCTG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
ACATTTGTTCATCCGT	ref_3238_RC	7	26	10	14	17	13	12	9	18	10
ATGATTACGCTTTTCG	ref_3238_RC	11	7	10	10	9	12	7	5	16	10
TTCGTACGTGTCAATG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
CTGAAATTGGTACTTT	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
ATCTGCTCGCGGATCA	ref_3238_RC	5	3	3	4	4	6	3	0	2	2
GTACACAGGAGCCTCC	ref_3238_RC	11	20	20	17	28	16	25	24	27	23
ATTTACTCAGTGCCCT	ref_3238_RC	6	4	4	6	5	1	6	4	9	3
ACTCGTGCCAGTACTA	ref_3238_RC	46	23	35	33	47	28	38	31	45	32
CCGTTTTGCTAGCATC	ref_3238_RC	26	31	27	19	28	20	32	22	41	19
ATATTTGTTAATACTG	alt_3238_RC	43	53	56	51	62	42	56	39	73	37
CCAAGTATGGCCTTTG	ref_3238_RC	11	16	16	22	14	10	13	11	8	11
AATAGTTTCGTTAGTC	ref_3238_RC	46	60	67	57	64	45	67	49	67	54
ATTATTCGGCCCAAGG	ref_3238_RC	18	16	21	13	14	21	13	17	14	14
ACTCCTGAAAGAGTTA	ref_3238_RC	10	23	15	16	35	16	16	24	22	11
ACTTGTTAACATAGGA	ref_3238_RC	17	18	17	18	20	17	23	19	15	13
GGCTTCAAGCCGGTTT	ref_3238_RC	43	40	59	57	48	47	44	48	39	60
TAAAGTCTGTGGCTGT	ref_3238_RC	6	11	17	12	9	16	10	4	13	10
ACAATTGCAGCACGGC	ref_3238_RC	2	2	4	5	4	5	5	5	6	2
TGCTAATTTCACGGGA	ref_3238_RC	58	48	53	50	61	42	57	53	48	40
TGGCAACTCCGCAGCT	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
AGCAATTTACACACCT	ref_3238_RC	28	33	49	41	33	35	48	41	56	23
CTGGCATCATCGGTTC	ref_3238_RC	125	141	188	165	135	119	141	129	153	112
TCTAAGCGGGCGTTCT	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TCTGCGAACCCATTAT	ref_3238_RC	33	23	44	16	30	19	25	27	25	19
TGACTTACATGGGCTC	ref_3238_RC	9	6	20	11	8	9	15	6	12	8
ATCGCTCTTTCGCCAG	ref_3238_RC	77	61	106	70	80	66	71	102	75	84
TGTCAACGCCGCAGTT	ref_3238_RC	5	9	7	1	8	3	6	6	11	6
AACACCTAAAGGCCCA	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
GGCCTTTATCGGGACC	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
AACAATCCACACTAAC	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TTCAATCTGCAATGCA	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
ATTGGCTATAACATAG	ref_3238_RC	2	5	1	2	0	0	1	0	1	3
ACGTGGTCGGCCGTAC	ref_3238_RC	23	22	30	28	17	23	19	20	18	27
TGCGCATCGGTTGCGG	ref_3238_RC	6	7	6	8	6	3	4	3	5	5
CCTGTACTGTCCAGCA	ref_3238_RC	7	7	9	9	11	9	13	5	11	7
ATGTTTCGTGCCACAA	ref_3238_RC	2	0	0	1	3	0	0	2	0	1
CATGTTTTCTAGTGCA	ref_3238_RC	15	24	13	12	11	7	12	10	15	7
ACAGCAGGGAAGGGTC	ref_3238_RC	25	22	14	17	13	10	32	17	12	20
GGTCCTTTCTGGATGT	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTTGCTGTCTTT	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TGAACTTGTGCTGAAT	ref_3238_RC	5	3	5	1	6	7	1	6	1	2
CGGCTTCAGTTAATTG	ref_3238_RC	39	33	30	28	26	22	30	30	18	20
TTGCCGAGGTCAATCC	ref_3238_RC	95	94	95	86	110	92	90	78	102	85
GTGTCCGAGCATTTGA	ref_3238_RC	36	39	47	39	32	38	45	21	30	37
CCTGTGCACGGTATCA	ref_3238_RC	26	53	38	30	55	24	98	27	73	21
TCTCCATCGTCCTTCA	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
AACGTGTTGCGGGGGT	ref_3238_RC	31	34	33	41	38	35	36	20	33	28
GCTTCCTATACGGCGT	ref_3238_RC	18	14	14	15	8	8	15	20	20	18
TCCGGGCCAGGCGGAA	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
CAGCTGGCATATCTAG	ref_3238_RC	8	7	6	9	12	14	10	6	21	4
GTCTTCATGATGGTTC	ref_3238_RC	25	21	20	31	25	21	15	27	28	21
ATGCATTTTTATTTTG	ref_3238_RC	139	135	197	166	138	160	136	141	151	132
TCTAGATCATGCTCCG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TCGGGTACGCTTATCG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
CCGCTGGAGATTGCCA	ref_3238_RC	17	43	32	22	36	22	14	37	23	15
TGCGTGAAGGAGGACT	ref_3238_RC	22	16	14	19	20	25	23	11	14	24
TGATGAACCTCTTTTG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
CAATCAACTTCGTTAC	ref_3238_RC	21	15	23	15	14	25	17	22	17	16
AAAATTAGAAGGCCCT	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
CACCTCGCAACTTACC	ref_3238_RC	2	10	1	0	12	1	9	1	11	3
AGTCGCCGTGCACCTG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
CAACCCTCCACTGTAC	ref_3238_RC	14	24	20	25	18	13	27	20	20	19
ATAGGCCGAACTAACC	ref_3238_RC	8	9	6	10	11	16	9	8	18	7
TCGAGGATTTTTTTGA	ref_3238_RC	27	28	33	26	19	23	27	12	26	16
TGGGGGGTCTTGAGTA	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
AAAGACAGGGGTGGTA	ref_3238_RC	1	5	0	1	1	0	0	1	0	3
GCTTGTTTGAGCCTCG	ref_3238_RC	14	27	30	17	23	15	26	21	28	13
GCAAGGGTCTCGCAAT	ref_3238_RC	23	12	23	25	26	28	21	21	29	31
AGGCCTTCGTAAGCTC	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TGAGGTCCTTTTATAA	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
AGGGGCTATCATAATT	ref_3238_RC	2	4	4	6	4	6	1	6	3	0
GTGAGAGGTCCCCGGT	ref_3238_RC	28	59	46	50	46	41	65	45	49	38
GGTTCGCTACTTGTTA	ref_3238_RC	20	21	19	19	26	20	22	19	21	13
CTTGACTTAACACGTA	ref_3238_RC	11	8	16	11	18	13	14	16	12	13
ACGGATTGCTTGATGA	ref_3238_RC	17	17	23	19	17	12	13	21	13	12
CAGAACCGGTGTGTCC	ref_3238_RC	0	2	0	0	1	0	0	1	3	1
TTCTCTAGATGTCAGG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
GTAGCTTTGTTTGGGT	ref_3238_RC	6	10	15	19	16	16	22	14	20	15
CATTTGGTCATGGACG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TCCCTTTGTCCTTTTC	ref_3238_RC	35	29	28	32	18	29	25	20	27	33
AATTGTCTCGTCATAC	ref_3238_RC	3	3	3	1	1	0	2	1	3	0
CGCCCATCGGGTTAAC	ref_3238_RC	45	47	53	33	73	44	52	42	46	57
TTTTGCATGTAGTGTC	ref_3238_RC	14	24	18	22	32	23	33	14	36	18
CCATATGGTGTTTGTG	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TGCATCCCTCAGGGCC	ref_3238_RC	0	0	0	0	0	0	0	0	0	0
TCGTTAGATCACCGAC	ref_3238_RC	13	8	15	10	4	13	19	8	18	7
CTCATGCATGCGTCTA	alt_3238_RC	30	45	28	38	49	35	45	30	44	27
TTTTATATTGGCATTG	ref_3238_RC	28	22	37	30	30	24	28	24	39	24
GTCCGGGTACTCATCA	ref_3238_RC	16	8	17	14	13	10	14	6	14	5
ACGTTTCGCATCGGTC	ref_3238_RC	7	18	8	14	9	2	7	6	17	10
TTCATGTTACTTGGCC	alt_5946_new	1	2	1	0	3	0	1	0	3	0
ATTCATCTTTTACTCC	alt_5946_new	0	1	1	0	0	0	2	0	0	0
CGGGAAGACATTCTAA	alt_5946_new	8	14	14	9	14	11	22	7	26	13
GGATTTTTATATTGAT	alt_5946_new	5	1	3	1	2	2	2	2	3	5
TGGCCAGCGCCCTCTT	alt_5946_new	2	1	0	1	4	1	6	1	1	1
ACTGTGGCCTAAACAC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TGAATGGGAAAGCGCA	alt_5946_new	1	0	0	0	0	0	0	0	0	0
TAGTAGTTTGGTCCCG	alt_5946_new	0	0	3	0	0	1	0	1	2	0
TCACGATCAATGGCAG	alt_5946_new	3	0	0	0	2	0	0	0	0	0
AAACCTTGATTAGGTG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
AGGCCAATCCCTAGTT	alt_5946_new	7	6	6	8	2	3	7	3	8	2
ACCGGCTCGATCAGCC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CTTATAGTTACGCGGG	alt_5946_new	10	10	15	10	18	13	13	5	6	9
GGAGGGTACCGTATAT	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CACTTTGCATTTTGAT	alt_5946_new	10	15	21	16	14	11	10	14	11	11
ACTCAGGCACTTTGGC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
GCCACGTACATTTACC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TGTGATAGAGGCCGAG	alt_5946_new	24	23	35	20	24	19	31	39	24	20
ATAATTAGTTTGTCTC	alt_5946_new	0	0	0	1	0	0	0	2	1	2
TGGAGATATACTCCGC	alt_5946_new	0	0	2	3	2	2	2	0	4	0
TTATCTGCGCCCTCGT	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TGGAGGTAAATTTCCA	alt_5946_new	5	3	5	6	4	3	3	5	5	2
AGGTATTGTGCCTTTC	alt_5946_new	3	4	8	2	6	3	4	2	5	5
TCTTAGTGTTTTCCCT	ref_5946_new	2	1	1	1	0	1	3	3	0	3
AAATTTGGTTTCCTGG	alt_5946_new	5	10	11	8	7	4	8	13	6	4
AATCTACCCAGGGTAT	alt_5946_new	2	2	3	5	2	0	5	0	3	3
CAATATAGAGATGCTT	alt_5946_new	4	8	3	4	0	4	7	2	1	5
AGTATTCTGCGAGTCC	alt_5946_new	4	13	4	13	8	8	10	10	3	4
TCGGGCTCTACCGCTA	alt_5946_new	10	16	17	19	22	18	14	22	26	19
CATTTAAAACGTCTCG	alt_5946_new	4	5	7	3	3	7	7	3	5	2
CCCTTATGAAATTCGG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TTGGCGGTTCGCCCTA	alt_5946_new	4	8	6	9	9	7	8	5	3	5
CGATGTTGCTATCTGG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CATCAGTAACTCAATA	alt_5946_new	0	0	1	0	1	0	2	1	0	0
TATTAAAGGCGTTCAA	alt_5946_new	5	5	6	5	8	1	7	4	3	4
CAGTACCCCATCTTTC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TTTAAGTGGTCATGCT	alt_5946_new	8	5	11	9	3	7	7	4	6	11
TCTGTAACACTAGAGG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CTGTGTGGAGGCTGTC	alt_5946_new	5	3	7	5	5	3	1	6	5	1
TATGTTAGGGTTTAGT	alt_5946_new	11	16	5	14	10	7	8	10	10	5
TCAGTCTGGGTTAACG	alt_5946_new	4	3	5	3	5	5	3	5	5	5
GTTGGCAATAGCTATC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TAGCCACCAGACTGAG	alt_5946_new	2	0	3	1	4	1	6	0	4	1
CGTATCGTTCTCATCC	alt_5946_new	3	3	0	0	3	0	0	0	1	0
AGATCTCAAGTCTACC	alt_5946_new	2	1	1	0	0	1	1	0	0	1
ATTCCTACGCCCTTTG	alt_5946_new	0	1	3	0	0	1	0	1	3	2
GTTACCTATCATTCCA	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TATGAGGGTGTCGCCC	alt_5946_new	1	3	4	3	2	2	3	1	4	4
TCCATGGAGTCACTTC	alt_5946_new	7	6	8	4	6	10	9	4	17	9
GCTGGGATATACCGTT	alt_5946_new	0	0	0	2	4	0	0	0	3	2
TATTGTACCCTTGGAA	alt_5946_new	0	3	2	1	0	2	1	0	2	0
TACTAGCTCTACGAGC	alt_5946_new	6	3	6	1	2	5	1	2	2	4
CATTGTTCAGGGCGCA	alt_5946_new	0	2	0	1	2	1	0	0	0	1
GGGGGCGAGTCAGTTC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
ACGTCTTGTAACGTTT	alt_5946_new	0	0	0	0	0	0	0	0	0	0
ACTGCTGCGGGTATGC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TCACGTTTAGGGGGCG	alt_5946_new	16	7	19	12	13	4	23	20	27	22
TTTGGCTTTTAGGGTC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
AATTATTTACTTCGTC	alt_5946_new	4	3	7	3	1	4	8	6	4	2
CTTTTGCCGTGTTACT	alt_5946_new	0	3	2	0	0	2	1	0	0	2
TTCCAAAGTTCCGGGA	alt_5946_new	3	3	3	1	2	3	1	1	1	4
TTCCATGAGCTTGAGT	alt_5946_new	0	0	2	0	0	0	0	0	0	1
CGTTGAGTTGATTCAG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
GGTGTTGGCAACTTTT	alt_5946_new	3	7	1	6	0	2	7	0	3	1
AACGCTTCCGCTTCGA	alt_5946_new	0	0	0	0	0	0	0	0	0	0
ATGCCGGTCACACCGG	alt_5946_new	4	1	0	3	0	6	2	0	1	2
CCCGTTTTCTTCATTA	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TTACTTAGGTGGCCTT	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CCTTCTAGCGGGGCTA	alt_5946_new	9	5	8	13	12	8	8	7	12	11
GATTCGGAACTGGGGG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
AGATACTAGGAACTGT	alt_5946_new	0	1	4	0	0	0	2	2	3	1
TTTAGCACCGAGATCC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CCCACAGAGCGGCGAT	alt_5946_new	0	0	0	0	0	0	0	0	0	0
GTTTGCTGATCATTGA	alt_5946_new	0	0	0	0	0	0	0	0	0	0
ATCTAAGCACATAGTT	alt_5946_new	3	1	3	2	1	2	1	0	3	2
GTTGAAGATATACCAT	alt_5946_new	1	0	4	2	6	1	3	6	3	0
GGCTGACTAATATGCC	alt_5946_new	1	1	0	0	1	0	2	0	0	4
TGATAGTTTCTTGATG	alt_5946_new	2	3	4	4	11	0	6	1	5	9
TTACAACTAATCGCAA	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CCTCGTAAGCCTTTTG	alt_5946_new	14	22	21	11	18	13	11	4	22	11
GGCATTTACTCACTGT	ref_5946_new	1	3	2	4	4	4	4	0	0	0
GGGTCCGCTCTTGTGA	alt_5946_new	7	1	3	5	5	5	3	10	2	3
TTTCTGTGAGATCTGG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
GCTGCACGATTTTGGC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CAGTTTAGCGGCAATC	alt_5946_new	7	4	4	2	6	0	6	7	3	3
TGGAATATTTTACCAC	alt_5946_new	0	0	0	0	0	0	0	0	0	0
GTCAGTTCTCCGCGGA	alt_5946_new	4	0	3	2	3	1	0	3	2	3
GATGCATTCTAGAACA	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TACCTAGTTTCGGACT	alt_5946_new	0	0	0	0	0	0	0	0	0	0
CGCTTTGTGTCGTCAA	alt_5946_new	11	9	5	8	11	11	11	14	7	8
ACATCGGCCAGATAGG	alt_5946_new	16	6	17	11	6	11	12	14	4	10
CGGATACGGTCATAGT	alt_5946_new	0	0	0	0	0	0	0	0	0	0
TTATTCAAGCGCCATA	alt_5946_new	2	3	2	3	0	2	1	1	0	2
TGCGTTGTGTCTTCAG	alt_5946_new	0	0	0	0	0	0	0	0	0	0
GGCATCTCTTAGTTTT	alt_5946_new	1	0	1	2	2	3	0	1	1	0
CCGGAACTGCCGTGCG	alt_5946_new	0	0	1	1	0	0	0	0	1	0
GGCTGTCCGGTCGGCA	alt_5946_new	0	0	0	0	0	0	0	0	0	0
ATTAACGAAAGGCAGG	alt_461_RC	0	0	0	0	0	0	0	0	0	0
TCCGTTTTGTTAGTTA	alt_461_RC	0	0	0	0	0	0	0	0	0	0
AGGTGGTGTCCCTATA	alt_461_RC	0	0	0	0	0	0	0	0	0	0
GTTTGGTTCGGTCTCT	alt_461_RC	22	26	18	17	28	23	17	15	33	19
ATGTTACTTACATCGT	alt_461_RC	50	52	39	32	66	36	56	34	64	35
GTACGCCTTATCTTGG	alt_461_RC	0	0	0	0	0	0	0	0	0	0
TGGAGAACTCCGACCG	alt_461_RC	0	0	0	0	0	0	0	0	0	0
TCCGTCTCATTATTTT	alt_461_RC	7	34	27	19	38	19	29	22	30	16
TGTTTACAGTATTTAC	alt_461_RC	0	0	0	0	0	0	0	0	0	0
TTATCTAGGAGTCTGG	alt_461_RC	0	0	0	0	0	0	0	0	0	0
CTAATTTAATTTTGTA	alt_461_RC	24	12	20	17	19	19	19	23	25	14
GTTTCCGCGTTATCAT	alt_461_RC	3	1	5	3	0	1	5	3	3	4
ATTTATCATATGAAGT	alt_461_RC	11	8	8	6	11	11	9	14	14	14
CGATCCCTTGTCGATC	alt_461_RC	30	18	37	31	48	38	27	33	38	32
TCTTCCCGATTAAAGG	alt_461_RC	22	24	17	17	19	17	14	8	12	10
CATTTAGGTTAAGGCT	alt_461_RC	0	0	0	0	0	0	0	0	0	0
ACCTGTGTAGTAACTC	alt_461_RC	15	10	12	14	13	13	15	17	12	8
ATGGTATCACCTGATC	alt_461_RC	47	71	73	56	77	49	79	60	69	49
GGACCGTGTTTGTCAA	alt_461_RC	0	0	0	0	0	0	0	0	0	0
TCTTGTTCGTCATGGG	alt_461_RC	0	1	3	1	1	0	2	2	2	1
TTTAGAGCGTTCGTGT	alt_461_RC	0	0	0	0	0	0	0	0	0	0
TCTGTGGACAATCTTT	alt_461_RC	0	0	0	0	0	0	0	0	0	0
GAACCACCCTGGTGGA	alt_461_RC	25	27	42	15	28	29	27	23	49	28
GGATCGCTCATCATAT	alt_461_RC	0	0	0	0	0	0	0	0	0	0
TTCCTGTCTTCGGCCG	alt_461_RC	26	39	28	29	30	29	28	27	33	20
TTTGATAAGGACAATT	alt_461_RC	0	0	0	0	0	0	0	0	0	0
ACGCCTCTACAGAGAT	alt_461_RC	12	23	23	27	16	23	30	14	23	15
TTCTCATCGATCAATT	alt_461_RC	97	132	112	132	149	96	123	89	137	88
ATGCTTACCGTGAATT	alt_461_RC	3	14	2	8	7	2	9	4	14	2
CCCCTAGTAAACTTTC	alt_461_RC	0	0	0	0	0	0	0	0	0	0
GCTTCTTTTTTGTGAG	ref_461_RC	0	0	0	0	0	0	0	0	0	0
CGTATATCCCGCAAGC	alt_461_RC	43	49	47	37	55	43	56	31	55	39
TAATATTGCTTACACG	alt_461_RC	49	34	33	25	38	30	39	23	54	23
TAATTGGATGTGGTTG	alt_5092_upstream	0	1	0	0	1	0	0	0	0	2
TCGTCTACCGTGGCGT	alt_5092_upstream	0	1	0	1	0	0	1	0	1	0
AAGTGTCGGTCGGATT	alt_5092_upstream	21	26	26	27	25	21	48	17	44	22
GCGCAAGCGCTTGGAA	alt_5092_upstream	16	33	20	14	21	9	30	16	30	17
GCTGTCTTCCTGCTGC	alt_5092_upstream	9	14	15	15	12	5	17	10	8	7
CGGCGCATGGCAGTCA	alt_5092_upstream	11	24	21	15	29	20	21	12	20	17
TGATTATTCTTTCTGT	alt_5092_upstream	29	32	34	22	50	25	28	27	39	25
TACTGGTACGATCTCT	alt_5092_upstream	5	8	1	1	4	2	3	2	4	2
TAGGGTTTCAGGTACA	alt_5092_upstream	3	6	1	7	4	9	4	4	7	6
GGAGAGCGGAATGTCT	alt_5092_upstream	7	13	11	2	13	5	21	6	12	2
GTCTATTCTAGAAAGC	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
GGATCCGACACTTGAC	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTTATAGTAGGG	alt_5092_upstream	18	26	22	11	22	17	21	31	33	13
CTGCGTGCCCCTTAGG	alt_5092_upstream	3	11	10	5	12	5	4	5	15	5
AGCTCTAATAGTCTGC	alt_5092_upstream	20	29	22	21	35	19	27	12	30	21
GGACCGGATATCCGCG	alt_5092_upstream	23	28	19	26	24	14	21	25	31	16
AGCTCTTGCGAGTAGA	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
CCTATCCAGCCCCTCA	alt_5092_upstream	10	15	18	13	17	4	17	13	8	10
CTCTGTACTCCACGGC	alt_5092_upstream	37	82	42	32	93	31	62	43	69	46
AAAGCTCCTCTACTGG	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCATCAAGGCTCG	alt_5092_upstream	18	26	11	8	18	14	15	23	16	13
TTAGTGTTAGCCACCG	alt_5092_upstream	39	53	50	36	79	34	71	33	100	34
GAGTTACCCGCTCGAG	alt_5092_upstream	67	79	52	38	77	44	88	37	79	42
GCGTCCTGCGTTTTTA	alt_5092_upstream	18	20	16	9	11	19	21	11	13	10
TATAGATTGCCTTCTG	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
TCTGAGCGGGCAGATG	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTTTTATCCGCCC	alt_5092_upstream	17	18	13	27	17	19	22	13	29	21
AACGGAATATACATCT	alt_5092_upstream	35	66	63	50	68	47	80	35	57	26
TTGTTCTGATTCGCTG	alt_5092_upstream	11	12	8	12	10	8	8	8	5	2
GCCCTGATTCTGTACT	alt_5092_upstream	10	9	9	5	16	11	6	7	17	13
AGCATACCTGTCTACC	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCCACTAGAGTCG	alt_5092_upstream	34	65	40	50	91	29	81	41	76	30
AAGCTGATGTAAACAG	alt_5092_upstream	31	32	33	37	38	21	44	31	53	28
AATTACGGGTTCTTGC	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
CCCGGCGGTGTTCCAC	alt_5092_upstream	13	13	10	7	27	7	25	4	28	2
CGCCAGCCGGCGAAGT	ref_5092_upstream	167	258	219	178	292	180	245	172	285	167
ACAGGTTTGTCCGGAT	ref_5092_upstream	299	419	350	293	434	291	433	262	456	240
AACACTGCCTGGTGTT	alt_5092_upstream	6	14	9	4	15	3	17	7	10	11
ACGTTAGGCACAACGG	alt_5092_upstream	20	29	17	9	36	19	37	9	47	12
GCCAAGACTACCTGAG	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGTGGATAGTGGC	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGATAAACCAGGG	alt_5092_upstream	41	43	54	35	52	38	70	25	73	40
GTGTATTTGTGTCATC	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGATACAGCGTA	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTAGTAGCCTTTT	alt_5092_upstream	0	0	0	0	0	0	0	0	1	0
GGTATACCAGTCATTT	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
CACAGTTTTATAAGCG	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
GTTAATGCTGTTTACT	alt_5092_upstream	12	30	28	12	42	14	29	18	41	23
GTACCTGACCTCATTT	alt_5092_upstream	15	17	12	21	20	9	15	10	28	14
TAGTCACATTGTCCGG	alt_5092_upstream	5	14	11	6	12	11	6	3	12	12
TGTTTTTAAGGGCCCG	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGTTCTGGCTTCT	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
GGAGGGGGGAACATCG	alt_5092_upstream	28	43	36	27	35	24	43	34	41	37
ACATTGCCTGGCTGCT	alt_5092_upstream	12	16	16	14	14	13	24	16	16	7
GTCTGGCATATCGTAC	ref_5092_upstream	19	29	30	24	29	14	24	16	25	20
TGCAGTCGCAGCCACT	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTGCTCCGACATT	alt_5092_upstream	6	9	11	8	3	6	16	3	8	9
GATCTCAGTTTAACTT	alt_5092_upstream	29	19	24	22	30	27	37	15	49	23
GCGGGCGAAGTCTTGC	alt_5092_upstream	61	112	74	59	79	53	88	56	101	48
TGCTTATACGCATATG	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTGCTATCGGTAC	alt_5092_upstream	36	99	68	56	63	46	76	41	91	31
TCTCTCGTACTATAAT	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
TGACTTCCGGGTACGA	alt_5092_upstream	25	36	24	29	33	28	33	26	34	17
GCCGCTGCCACTGGTT	alt_5092_upstream	47	81	88	68	101	56	94	50	113	46
CATCAATTCAGCTTTC	alt_5092_upstream	5	6	10	6	5	2	3	4	6	6
TGGCGCCGCATCCATC	alt_5092_upstream	24	21	27	27	29	18	26	23	37	20
TATGGTTCCAAGTGGA	alt_5092_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTCATAGGGATGT	alt_5092_upstream	5	4	2	9	7	4	5	16	11	5
TTGTACAGCGCTGTTT	alt_5092_upstream	30	62	44	29	67	31	50	43	58	30
TCAGACATTTTGCTGC	alt_5092_upstream	20	37	38	32	41	23	27	26	45	27
CTATAATCTTCCGAGA	alt_5092_upstream	20	34	25	23	31	23	20	20	21	13
AACACAACGTGGTGCT	alt_5092_upstream	11	12	7	2	12	3	15	8	14	7
TCACCTTTACTCCCAT	alt_5092_upstream	16	13	15	13	24	10	18	12	17	10
AAATAGTTATGGTCAA	alt_5092_upstream	28	61	36	35	41	33	39	27	40	32
CCCTCGCTTCCATTTC	alt_5092_upstream	132	214	179	132	263	143	275	124	241	125
CCGAGATGATTTACCG	ref_5729_new	52	128	70	57	108	50	138	48	144	46
ATCGATCCATAGTTGT	ref_5729_new	0	0	0	0	0	0	0	0	0	0
TTGTGTGGTACTTGCC	ref_5729_new	77	75	64	60	65	59	72	50	99	50
ATCAATTGGCACTAAT	ref_5729_new	30	38	26	42	40	31	30	21	37	24
CAGAAGATAGCTCTTA	ref_5729_new	0	0	0	0	0	0	0	0	0	0
AGTTATTTGGTAGGCT	ref_5729_new	50	72	57	56	69	54	81	71	86	41
TTGGAGGAGGAAATGT	ref_5729_new	15	12	15	14	24	15	13	11	11	8
CACGGGGGTGGGGCCA	ref_5729_new	8	17	9	15	22	11	18	11	13	8
AATATAAACAGTCTTG	ref_5729_new	0	0	0	0	0	0	0	0	0	0
TGTGAGGCTTCGCTAT	ref_5729_new	0	0	0	0	0	0	0	0	0	0
GTTTTCTTCAACCAAT	ref_5729_new	28	37	35	41	61	31	54	38	43	39
TGACATGACGTGGTTC	ref_5729_new	22	55	45	38	53	49	58	23	47	36
CAAGCTTTACTCGCAC	ref_5729_new	28	47	38	35	50	28	53	32	31	26
TGAGAAATTTTACTTT	ref_5729_new	2	6	5	2	2	4	4	2	4	6
AAACTCTCACTTACGT	ref_5729_new	37	124	62	49	119	52	98	60	133	53
CCGTTGCGGAATTCTC	ref_5729_new	26	106	38	39	89	30	119	35	118	29
TGACGAAGCGTCCGCA	ref_5729_new	0	0	0	0	0	0	0	0	0	0
CATCATTATCGACGTA	ref_5729_new	45	68	59	29	55	43	42	52	46	34
CGCCAGCTTTTTCAGT	ref_5729_new	0	0	0	0	0	0	0	0	0	0
GATTGCAGTGTTAGCA	ref_5729_new	43	64	64	57	56	56	73	63	53	54
TGCTTCTTTTCGTTTA	ref_5729_new	60	86	86	60	70	65	101	56	91	62
TAGAGACGGGCATATG	ref_5729_new	12	8	11	6	13	8	16	12	11	6
GTTAGTTTGAAGGAAT	ref_5729_new	0	1	3	0	1	3	0	2	1	0
TGGTGGATCGTTTTCA	ref_5729_new	26	27	21	22	17	27	26	24	21	17
GCTACGTTCCCGCCTG	ref_5729_new	0	0	0	0	0	0	0	0	0	0
CCTCGGCTTGGGCGCC	ref_5729_new	0	0	0	0	0	0	0	0	0	0
GATTTGAAAGTTTTTT	ref_5729_new	29	38	29	23	23	19	34	20	33	29
ACTTTTAGGATCTTTA	ref_5729_new	16	42	35	27	33	27	34	26	33	24
AGTGAGTGCAGCTTAG	ref_5729_new	17	30	26	21	37	19	26	25	34	20
CCCTTTCTTTAAGGCA	ref_5729_new	6	16	10	7	12	1	21	3	14	4
ATGCCTCGGACTTGTG	ref_5729_new	3	3	9	7	9	2	16	7	13	5
TTACCTGTTATAATAT	ref_5729_new	3	12	10	2	7	5	8	5	12	6
AGGAGCGCACTGAGCT	ref_5729_new	0	0	0	0	0	0	0	0	0	0
CGGCGGTTCTTAATAT	ref_5729_new	24	34	22	22	33	12	32	16	32	15
ATGATACGTGTCCGAA	ref_5729_new	59	90	84	80	90	89	81	67	93	55
CGGGCCCCACCCTTGT	ref_5729_new	47	62	44	36	86	43	62	46	86	35
TACTTCATGAGGGGGT	ref_5729_new	29	34	37	43	35	30	35	33	31	28
TATGGATTCTGTTATC	ref_5729_new	13	12	19	20	18	13	22	15	8	4
ATTGGATGAACGTGTT	ref_5729_new	84	88	81	79	98	72	89	76	95	81
GCATGCGGGCGTAAAA	ref_5729_new	0	0	0	0	0	0	0	0	0	0
GGATCGGGTCAACGAT	ref_5729_new	34	45	38	35	31	30	39	28	46	22
CAGCTCCCCTCGAGTG	ref_5729_new	22	122	37	37	132	43	137	53	171	39
CTCAGTTCTTATAATT	ref_5729_new	13	35	26	28	30	20	33	23	43	22
CATATCGGTGGGTTCT	ref_5729_new	34	43	43	29	65	37	55	34	60	31
CGATCGTTACATGGTG	ref_5729_new	0	0	0	0	0	0	0	0	0	0
AAAAGCGTTCACTTTA	ref_5729_new	71	90	91	73	75	80	93	71	76	56
GCAAACGTAATGGCAC	ref_5729_new	164	207	168	184	253	171	225	180	247	162
TCCTTCTTGTCGTAGG	ref_5729_new	1	5	5	4	6	5	6	4	6	0
CGTGTCCTTTGCACGT	ref_5729_new	4	5	7	2	14	4	5	3	7	1
TGACGGCTTGCTGTTT	ref_5729_new	52	59	56	70	52	63	58	43	72	50
GTCTATCGGATTTTTT	ref_5729_new	9	3	9	4	6	5	7	5	10	4
TGTTGCACACATTGTA	ref_5729_new	0	0	0	0	0	0	0	0	0	0
GTCACTTAATCCAATT	ref_5729_new	125	153	129	131	159	117	189	124	162	108
TTTAAATTGTCGGCAG	ref_5729_new	72	82	81	73	81	55	107	55	98	58
ACTATTCTAGAACAGT	ref_5729_new	0	0	0	0	0	0	0	0	0	0
ATGGGCTTCTCTTCGT	ref_5729_new	12	17	15	5	15	13	16	17	21	12
TGAGGCGCGGGCCATG	ref_1709_RC	99	89	153	119	82	116	100	116	101	94
GCTTCGTCCAAAGCTG	ref_1709_RC	14	23	16	26	23	23	18	26	18	21
GTAAGGATCTGTGAAC	ref_1709_RC	7	18	9	5	5	15	4	9	13	10
GTACGAGCATAGGCCT	ref_1709_RC	3	0	4	1	3	2	3	1	3	0
AAACTTCACGTAGCCA	ref_1709_RC	10	11	12	11	6	13	8	7	12	10
GCCCCCAGGGAACTCT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
ATCGACAAACTATCGG	ref_1709_RC	26	31	42	38	35	31	33	27	35	24
TTCACTTCCGCCCCCT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
CTTAAGATCAAGCTCG	ref_1709_RC	41	74	57	50	80	47	73	48	76	44
TGGTTCACGTCTACTC	ref_1709_RC	23	27	26	22	34	33	28	28	31	13
TGTTTAGCATAGAGAT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
ATAATCGCGCCGTTAT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
GGAATGTCGCCGTGCA	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
CCTTACTTGGAATGGT	ref_1709_RC	47	40	78	58	78	57	78	51	73	50
AGCGCCGATCTGCGTT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
GGGTTGGTTTCAATGG	ref_1709_RC	13	11	20	11	17	14	12	19	16	15
AAACATGGATACGATC	ref_1709_RC	285	237	323	295	199	301	247	237	226	281
ACCCCTACGGGTATTG	ref_1709_RC	10	7	16	9	13	16	13	12	14	3
ACCAACTTGAAGCTAT	ref_1709_RC	200	175	240	198	216	206	177	209	180	180
CATTCTTGCTGCGTCT	ref_1709_RC	103	101	112	96	105	102	110	94	107	75
GTTGCGATCGCATTTT	ref_1709_RC	10	16	15	18	11	23	18	15	20	8
GTAGGTGTTACTTTAC	ref_1709_RC	24	25	19	25	25	17	28	19	36	13
CCCTGGTTATTTAATT	ref_1709_RC	142	117	204	150	146	145	156	103	147	134
CCCTCTACAACAGTTT	ref_1709_RC	28	27	30	26	17	18	12	20	16	22
CCGGACATTTGTGTCC	ref_1709_RC	84	84	104	78	91	87	99	70	90	103
TTGACTCTAAGTTTTA	alt_1709_RC	229	244	281	212	256	214	246	220	277	201
TTAGGCTGTTGGTACA	ref_1709_RC	28	39	29	21	24	27	31	22	20	25
GAAATTGATGTGTCCT	ref_1709_RC	54	68	107	79	83	76	70	75	69	70
AGTGACGCCACTCGCA	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
TGCTGGCCAAATCCTT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
CTATGAATGTTCGGTA	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
ATCTGAGATACCGATT	ref_1709_RC	110	102	109	101	96	94	106	98	114	108
TATTTTTCTACATAGT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
TTCTGGAGGTCATTTT	ref_1709_RC	40	50	69	68	55	64	52	63	56	46
AAGTAATGCGGACTTG	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
GGGTCTTACAGCATGG	ref_1709_RC	59	59	72	74	43	63	52	54	57	62
GTCCCTTAGCGCGGTA	ref_1709_RC	66	60	62	61	65	56	52	48	61	44
AGACCTTGGTTTTTTT	ref_1709_RC	53	40	42	39	29	44	36	32	33	41
ATCCTGGATAATACAG	ref_1709_RC	5	5	2	3	6	6	1	4	4	3
CTCTAGACCGATCGAG	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
GCAGCCAGAATATTTC	ref_1709_RC	12	21	18	20	24	9	19	14	10	23
TGACAACCCTATTAGA	ref_1709_RC	102	89	125	98	109	90	100	89	98	86
GTCTTTGTGACCCATC	ref_1709_RC	15	14	25	15	15	14	20	16	18	14
GCATAACTCGCCTTCC	ref_1709_RC	29	32	39	44	34	43	24	31	38	27
ATTGTGTATGGTTTGG	ref_1709_RC	156	149	179	155	147	143	152	140	169	140
TCTAAAGGCCCTTGGA	ref_1709_RC	5	13	16	16	14	15	23	15	24	14
TGGAACGGCTCCGCGC	ref_1709_RC	33	38	56	31	25	45	28	30	43	34
AGGGCAAGCCCATGGC	ref_1709_RC	1	2	6	4	0	1	2	7	0	4
GTGTAGACACACACTC	ref_1709_RC	0	18	7	4	10	3	14	2	6	5
TACCGAGTTTGTTATC	ref_1709_RC	0	5	4	5	13	1	3	3	2	3
GCCCGATTTGTTCAAT	ref_1709_RC	44	66	86	76	57	55	61	55	60	50
TACTACACCGCTTCGT	alt_1709_RC	29	29	40	24	20	25	30	22	28	36
CGGTTAATGCTGAGTC	ref_1709_RC	35	39	44	38	19	34	40	30	41	24
CAAGAATGATTGCACT	ref_1709_RC	145	198	217	141	158	150	197	143	175	126
TACCGCTGATAGTACA	ref_1709_RC	49	53	41	44	43	47	37	35	48	32
ACCGCACTGATGATAT	ref_1709_RC	22	20	18	13	17	16	17	13	30	17
TTAAATCCCGTTTCCT	ref_1709_RC	0	0	0	0	0	0	0	0	0	0
TCCGAGTTGGTTCTGA	ref_1709_RC	66	48	73	56	47	44	45	58	56	60
TGCGACATTCGATACG	ref_1709_RC	23	25	14	19	20	14	20	20	31	20
TGATTCCATCACCACT	ref_1709_RC	14	15	16	28	18	21	14	18	18	20
CACGCGCCGTATTACG	ref_1709_RC	6	1	7	5	9	5	6	6	6	4
CACTAGTCACATGGAT	ref_6079_new	9	32	9	20	19	5	38	21	30	16
AGGACATATTACCGAA	ref_6079_new	0	0	0	0	0	0	0	0	0	0
GTCTTTGAACCCAGTT	alt_6079_new	72	121	88	78	153	77	135	71	171	78
TCAGATTCTTCCTTTG	alt_6079_new	55	58	68	37	65	61	72	42	89	40
TAGTTCGTGCTGGTCT	ref_6079_new	1	0	2	3	1	0	0	1	3	1
TTACCCCTCCTCCCAT	ref_6079_new	0	0	0	0	0	0	0	0	0	0
TGATAATCTCATATGT	ref_6079_new	14	35	33	10	35	21	32	12	28	4
ACATTGAACAGGTAAT	ref_6079_new	14	15	4	3	12	14	18	6	15	7
ACGCAGGTCACGTCGA	ref_6079_new	2	3	2	3	3	2	2	1	4	1
AGAAAATGCGGGTTCT	ref_6079_new	14	20	14	15	25	9	15	7	17	15
GGGACGGTCACTGGGA	ref_6079_new	5	13	9	6	5	9	11	1	11	10
TTGTGGGCGGACAACA	ref_6079_new	45	83	72	38	67	44	106	39	70	50
GTCCCCGCCTGAAACG	ref_6079_new	31	52	25	23	52	18	71	26	64	13
TTCGGGGTGGTGGAAC	ref_6079_new	27	57	33	23	38	23	46	21	46	25
GATACGTATGCACATC	ref_6079_new	28	38	39	30	57	31	53	23	41	12
ACGTCATTGCCATAGG	ref_6079_new	72	126	87	71	117	79	138	65	132	63
GGGCGTTTTGTATTTG	ref_6079_new	37	94	51	46	52	47	77	45	70	33
GCTTACTATTTGGTAA	ref_6079_new	0	0	0	0	0	0	0	0	0	0
TGGCATGGATACTCCT	ref_6079_new	16	24	19	19	15	7	23	10	19	12
AGTGGGGGAGCTTACG	ref_6079_new	25	38	27	10	39	16	35	11	35	25
TTCCGTTTTTTGCGTT	ref_6079_new	0	0	0	0	0	0	0	0	0	0
TAGTGAAGAGACCGTG	ref_6079_new	0	0	0	0	0	0	0	0	0	0
GCAGGTTTAAGGACTT	ref_6079_new	22	38	17	14	32	16	26	20	42	22
CATTGGCGTACTCACT	ref_6079_new	6	4	1	4	8	1	5	7	9	1
TAGCATTGACCGACTT	ref_6079_new	28	48	39	28	48	34	60	27	63	38
TTGAAAGGCTTGGCAC	ref_6079_new	23	30	18	24	48	24	31	11	55	6
CTAAGGTCAAGTTTCA	ref_6079_new	37	82	44	43	97	41	104	47	117	43
TGCTCAATTGCAATGT	ref_6079_new	53	61	62	51	91	52	126	65	102	57
TCTCAAAACTTTTTAC	ref_6079_new	15	54	28	23	36	13	35	19	33	17
CTTTGATTAATACCCG	ref_6079_new	5	4	8	3	5	5	2	1	3	2
AGTTTATTTGTTTTTA	ref_6079_new	1	1	1	6	7	4	2	9	7	3
TCCTTGGTCGTGCAGT	alt_6079_new	7	9	3	6	10	7	10	5	11	4
GTACATTTCCATATCT	ref_6079_new	44	60	43	44	77	32	70	31	79	36
CGCCATTAATCGCAGT	ref_6079_new	4	11	4	2	12	6	21	5	5	7
TCAACTAATTTACTTT	ref_6079_new	13	14	5	3	21	4	10	13	18	4
TTGGTAATCGGTATCC	ref_6079_new	70	147	67	87	107	81	163	63	142	67
TGTACACAGGTATCAC	ref_6079_new	0	0	0	0	0	0	0	0	0	0
CATTATTATCTTCAGA	ref_6079_new	0	0	0	0	0	1	0	0	0	0
TGATCTCAGGGAGTTA	ref_6079_new	36	54	42	39	52	34	60	17	17	29
TCCCTGGACTTGGCGC	ref_6079_new	6	8	6	1	5	1	13	5	11	6
CGATGCCACACCCTTA	ref_6079_new	13	23	9	11	26	13	34	16	21	13
TACCCATGCCCAATCT	ref_6079_new	3	6	8	5	6	2	6	5	7	2
TCCGCCGATATTATCT	ref_6079_new	41	61	48	45	73	38	72	38	66	34
CCCCAGTTTGTATTAA	alt_6079_new	58	139	96	69	145	58	143	81	142	48
GCGTACGCACCTTACC	ref_6079_new	0	19	7	2	14	1	20	1	28	1
TTGGGGTCCCGGGGAA	ref_6079_new	7	21	12	16	14	10	17	16	31	18
ACGCCAATTTGACAGC	ref_6079_new	18	37	35	36	61	33	59	23	65	20
GCGCGCTTTTGCTCGA	ref_6079_new	10	5	7	7	13	3	14	6	24	4
TCCGGGTCTAGAAGAG	ref_6079_new	0	0	0	0	0	0	0	0	0	0
TTTCAATTTAGGGCGT	ref_6079_new	10	7	7	10	11	5	18	7	17	12
CTTATTGGGCAAATAT	ref_6079_new	5	4	3	1	4	2	3	3	9	4
TGTTTGGACGAGTGAA	ref_6079_new	3	7	4	7	5	3	3	6	8	2
TTTAGTTAACTGTCTT	alt_6079_new	6	17	4	13	17	4	14	5	10	8
GAGTTTGGTATTTTTA	ref_6079_new	0	0	0	0	0	0	0	0	0	0
TTGCGACCTCTCGCGA	ref_6079_new	0	0	0	0	0	0	0	0	0	0
GTCAGGCGCACCTAGA	alt_6079_new	71	106	75	61	101	54	68	43	105	50
CCGTGGGAAGCGTACT	ref_6079_new	14	29	33	8	35	20	33	8	37	26
GGGGATAACCTGAGCC	ref_6079_new	49	82	54	34	70	40	76	42	97	43
ATTGGTTATTGCCACG	ref_6079_new	27	44	24	23	44	24	47	16	54	21
TTAGGATTCAACTCAT	ref_6079_new	26	44	23	27	56	30	45	24	52	29
CAAGGTGATTCCAGTG	ref_6079_new	9	28	13	12	36	6	50	6	30	6
GCTCTGCCGGGGCATT	ref_6079_new	0	0	0	0	0	0	0	0	0	0
ATCGCTGCATGGTCAG	ref_6079_new	73	130	91	81	127	90	126	93	141	75
CACAATGATACGTTCT	ref_6079_new	0	0	0	0	0	0	0	0	0	0
CTATTAAACTTGATCA	ref_6079_new	110	219	141	108	218	105	211	116	234	108
CTATCTATCATCTTGG	ref_6079_new	172	295	206	182	307	139	323	171	328	161
TCCAGGTTCTTTGCCA	ref_6079_new	1	4	4	1	3	0	6	0	3	2
TTATCGATTGTTCGTA	ref_6079_new	66	132	70	61	159	61	152	75	169	49
ATATTAACGTGCGGTT	ref_6079_new	0	0	0	0	0	0	0	0	0	0
CTGACGATGGGTGGAG	ref_6079_new	28	37	37	25	51	24	37	28	50	33
GCTTCTCAGATTGCGT	ref_6079_new	0	0	0	0	0	0	0	0	0	0
TCACAGCGTTTCAAGG	ref_6079_new	45	60	36	43	71	35	47	17	62	34
GCGAAGGTGAAAAATC	ref_6079_new	0	0	0	0	0	0	0	0	0	0
GGCCGGCAATGCATTA	ref_6079_new	46	90	65	49	74	39	84	44	79	35
GGGCCGTTGATTTTGT	alt_6079_new	39	69	38	34	40	32	55	31	59	36
GCACCCCATGACTGTC	ref_6079_new	11	23	14	18	29	13	21	9	28	6
CAGGGCCGTCAGCTTT	ref_6079_new	0	0	0	0	0	0	0	0	0	0
TCGTTGTCTGCCCCCC	ref_6079_new	1	5	2	1	3	1	3	4	3	4
TTAATAGAGCCATCCA	ref_2989_RC	25	31	21	18	23	14	31	19	27	18
GGGGCCGGTTCTCGGC	ref_2989_RC	18	18	26	17	35	24	32	24	38	17
CGCTTGGTTTTTTAAG	ref_2989_RC	12	40	28	17	34	29	63	28	59	15
CGCGCGGAACATTCAT	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
CGCTCAACATACGGCC	ref_2989_RC	0	2	3	2	0	1	2	1	0	4
GCTGGGTCTAATTAGA	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
CCCAGCCTGTCCACCA	ref_2989_RC	16	35	18	27	33	23	60	21	49	12
GAGCCATCCAGAACAA	ref_2989_RC	2	17	5	7	25	5	29	10	31	3
CCATTTTATCCAAAGT	ref_2989_RC	36	226	75	59	196	53	194	53	219	43
GGGTTACAGTTAAAGG	alt_2989_RC	7	8	10	6	10	4	7	3	8	4
ACCAAGGGCGCATTGT	ref_2989_RC	47	51	50	45	78	39	103	41	83	31
GCATCTGGTAACAAGA	ref_2989_RC	1	1	0	0	3	1	1	2	0	1
CTGGCGTGCTAGGTTG	ref_2989_RC	2	4	8	7	5	3	6	2	6	4
ACAACGAGGATGTCTA	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
TTTATCCTTCGGGAGA	ref_2989_RC	3	11	4	5	5	3	9	3	12	2
TTTTTAGTGGACGGTA	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
TCAACGAGGATGTCTA	ref_2989_RC	69	97	83	90	128	63	108	63	117	62
GCATCTATGCCCGATA	ref_2989_RC	12	12	5	14	6	12	12	8	14	10
TTCAACGTTCTAGATT	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
GCCGTGCAGCACTTGC	ref_2989_RC	32	56	42	33	46	30	45	35	47	27
TCCAGCGACCCAGCCA	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
TGACCTGCCTCTCGCT	ref_2989_RC	3	8	1	3	9	2	9	4	12	1
TCGTCTTACCTAGACC	ref_2989_RC	22	47	40	19	50	30	68	16	67	26
CTCGCTACTCAGGGTT	ref_2989_RC	14	40	19	19	54	14	31	21	38	8
ATCAACTTGCGATAGT	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
CTAGACTTTCCGGGCG	ref_2989_RC	40	98	60	44	102	39	70	44	74	36
CGCGAGCGCTAAGACT	ref_2989_RC	13	26	20	14	31	23	27	11	29	15
TCAGCATCCTGTGTAG	ref_2989_RC	5	16	9	9	12	15	12	2	14	2
GACGTGGCCTATTACT	ref_2989_RC	43	58	56	62	56	33	75	40	88	26
CGCATCCCGGATGCAT	ref_2989_RC	5	13	14	4	7	10	4	5	7	8
TACAAATACTAGACTC	ref_2989_RC	31	39	47	28	61	35	50	43	51	24
GTCCCCTTGTCTCCCA	ref_2989_RC	11	11	15	9	8	12	10	12	18	19
CATTACCCGCAGAGAC	ref_2989_RC	3	10	1	1	1	3	12	5	8	2
GTATAGCATACATCTT	ref_2989_RC	27	35	25	23	21	22	17	18	30	17
TTTCCTGCGAATAAAT	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
TCTAAGTTTCTTCTCC	ref_2989_RC	31	42	27	33	57	31	58	29	48	29
ATCGCCACGTGATCCA	ref_2989_RC	41	71	54	47	61	57	71	59	80	49
AGTGGTGCCCACCGCG	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
ACACCCTCGCTCTATC	ref_2989_RC	1	16	4	2	18	3	16	5	12	5
TATGATTCGATGCGCT	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
CCGTAGAATTTCCCGA	ref_2989_RC	13	14	12	7	12	15	21	2	30	4
TGGCAGCATTTTTCCG	ref_2989_RC	14	36	28	21	33	31	33	16	36	13
CGCTAGATGAGTCAAT	ref_2989_RC	25	25	26	27	31	21	34	16	31	29
AAATAGCAGAGAGTAT	ref_2989_RC	16	45	18	12	22	10	39	17	26	9
GTTCCATCTGTTCGGT	ref_2989_RC	19	44	16	16	44	11	41	10	35	14
TTTTTATCGCACAGAA	ref_2989_RC	12	11	18	14	10	7	25	9	15	11
AGTATACCGCGCGTGT	ref_2989_RC	96	127	115	88	130	95	152	93	164	76
GTGGTTGTCATCCGTT	ref_2989_RC	7	17	14	9	15	6	14	5	17	9
TAAGTACCTCAATACT	ref_2989_RC	80	141	92	93	122	91	153	60	129	90
TGCCTATCTAGAACAG	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
TTACAACGCGCTTATG	ref_2989_RC	19	30	22	20	35	11	30	11	38	13
TCTCCCAGCAGTTACA	ref_2989_RC	20	41	18	15	25	17	17	14	49	18
TACGACTTTCTTTCTA	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
CTGCAACAGCTTTTTA	ref_2989_RC	27	54	32	23	73	30	63	30	62	39
TAGTGCGCCTGATGAA	ref_2989_RC	57	66	50	51	74	37	64	38	73	41
GGTGCTCCCGGGCACT	ref_2989_RC	3	2	4	0	4	0	4	1	2	2
CTCTGATAAGTATCTT	ref_2989_RC	11	14	9	5	14	6	15	6	15	10
GCCCCATCGGTCTATC	ref_2989_RC	12	40	27	13	33	16	38	11	30	20
AAACAACGGTTAAGCC	ref_2989_RC	7	8	5	6	12	8	10	2	11	3
CCCCTCGAACCTGCGT	ref_2989_RC	45	87	50	53	93	59	99	38	105	44
GCCCGAATCTCTCGTT	ref_2989_RC	16	42	60	34	35	34	43	28	42	35
ACTTTTGGAATTTGTG	ref_2989_RC	5	12	8	2	14	3	12	4	9	10
TGTAATGTGGAGGCGT	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
TACCCTGAGAACTCGT	ref_2989_RC	3	12	3	5	8	6	5	6	10	3
ATCCCCCCGTTGGCGT	ref_2989_RC	16	147	25	24	147	29	137	21	120	23
GGGCGCAGGCCAAGGT	ref_2989_RC	10	16	19	17	29	20	28	21	31	15
ACATTTGTGGGTCAAT	ref_2989_RC	0	0	0	0	0	0	0	0	0	0
CTTTGATTATTTGTCG	ref_2989_RC	2	1	4	6	7	4	9	4	3	1
ACAAGCAAGGTGAGCA	ref_2989_RC	105	131	129	111	112	133	148	89	168	122
ACTATCTTGACACCTG	ref_3673_reverse	117	216	148	130	194	122	194	148	239	119
CGGCCCTGTATCCCAG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTGACTGTGTTGTATA	ref_3673_reverse	12	20	17	15	22	7	14	9	12	5
TCGCTTTCCCTTTCAC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGTGATAAGTTGA	ref_3673_reverse	6	11	4	5	12	4	6	9	5	3
ATGCACCATAGCCATT	ref_3673_reverse	20	35	18	28	48	26	37	27	38	24
GATTACTCTACCGCGT	ref_3673_reverse	4	3	2	0	3	1	2	0	1	5
CGCGCCTAGGGAGTCG	ref_3673_reverse	11	8	6	3	9	9	10	5	13	5
GATCAGTCAGTGTTTT	ref_3673_reverse	8	10	5	9	6	7	18	5	10	9
TAGTGGTGAGAAGAGT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTCCCAGGATGG	ref_3673_reverse	21	40	46	41	58	35	41	30	48	40
TGAATCTTCTAGGTTT	ref_3673_reverse	0	3	2	4	4	4	12	4	6	3
GGCTTTCTCTTGTGCG	ref_3673_reverse	15	17	16	21	24	11	29	13	33	13
TGCCAAATGTTTGGAA	ref_3673_reverse	30	40	32	37	56	22	41	14	52	19
TTGCAACGCCTCACGG	ref_3673_reverse	6	4	8	3	2	3	5	4	4	5
AGCGTTCTCAGTGAGT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTCCAGAAGCACT	ref_3673_reverse	43	42	44	22	45	33	54	24	59	27
GCAGGACCACAGCATA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TACTATTGCGGCGTTG	ref_5705_new	42	43	53	25	43	44	46	26	44	43
TTCACGAGGTTATCGT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGTTGTAAATGTG	ref_3673_reverse	112	138	163	108	164	124	183	114	179	113
GATAATTGCGCGATTG	ref_3673_reverse	13	14	24	12	17	16	31	10	18	6
CGTGGCAAGCAGGCTT	ref_3673_reverse	19	21	23	20	24	20	34	17	29	13
GTTAGCTTACCATGGG	ref_3673_reverse	41	83	54	52	87	36	75	43	95	44
GTCATCAGCTAAACGA	ref_3673_reverse	0	0	0	0	0	1	0	0	0	0
AGGCGGACACAACACC	ref_3673_reverse	18	21	24	20	35	19	28	18	40	19
AGCGCGTTCTTTGAGT	ref_3673_reverse	0	1	1	0	0	1	1	2	2	2
GTTAAGCTTACAACTA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
GGGCGGGGCGATACTG	ref_3673_reverse	2	4	1	4	5	3	7	3	4	0
AAGGGTGCTTCTCATT	ref_3673_reverse	11	27	9	6	17	7	6	11	22	16
AACTTACGACTCCGGT	ref_3673_reverse	0	4	0	2	9	1	5	2	3	0
CCGTTATGGGGGTTGT	ref_3673_reverse	31	42	28	26	34	20	47	31	51	20
CTAGCCGTTACCCCCT	ref_3673_reverse	10	22	15	7	19	10	29	14	34	9
GAGTCGCGTACCCCCC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CGCCAATCAGGTCAGG	alt_3673_reverse	35	52	45	46	58	23	66	39	71	40
TGAGGATGCTAGCGGT	ref_3673_reverse	13	41	8	14	19	13	19	12	19	17
TGGAATAGTCAGGTCC	ref_3673_reverse	11	21	25	18	24	16	19	14	26	23
AGGTGCTCACACAGTC	alt_3673_reverse	97	104	88	69	101	84	99	70	110	76
AGTTTTTGGGGAGGGT	ref_3673_reverse	68	92	78	72	105	78	97	67	102	70
TCACATGTAGATGGCA	ref_3673_reverse	65	66	64	50	71	42	67	58	85	44
GCATCGAATTGTGATT	ref_3673_reverse	8	12	11	5	16	7	16	5	9	8
GAGGTACCTGTCGTCT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCCCCTAAATCTC	ref_3673_reverse	4	4	1	4	10	5	6	5	8	4
CGCCAAATCTTAATTC	ref_3673_reverse	71	83	65	84	116	49	77	58	123	84
ATGATTGAAGCGTGAA	ref_3673_reverse	11	16	6	18	12	9	17	4	10	12
GTTTTACTTCTCTGAT	ref_3673_reverse	25	23	26	28	23	25	24	17	26	19
TTTTCGTGTGCCCCGA	ref_3673_reverse	21	50	49	37	58	35	46	26	50	38
AGCACCTGTTGCGGTC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGGTGCTTTTGAG	alt_3673_reverse	29	33	27	25	57	23	42	31	40	27
GGCTCAGCTCTGACTA	ref_3673_reverse	2	12	9	4	14	3	10	4	9	7
TCAAACCACCGGGAAT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTGAGATTCACAT	ref_3673_reverse	2	2	1	0	2	0	1	2	3	0
TAATGCATGATTGAAT	ref_3673_reverse	14	25	26	11	19	16	26	11	11	4
GACTTTCGGGATCAAT	ref_3673_reverse	1	2	2	4	4	1	2	4	5	2
TCTTTCTTTTTTTGGC	ref_3673_reverse	55	55	51	61	76	60	75	35	82	47
TGCTTTCCGGCCGGAT	ref_3673_reverse	45	60	65	45	68	34	56	29	69	43
CCCAGTTCATCTCAGC	ref_3673_reverse	5	7	4	4	8	4	11	4	12	4
GGTCCCCAGCAGTGAC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTTAACACTCCAT	ref_3673_reverse	40	83	48	36	100	46	94	51	82	41
TGAGACGGCTTGGGTT	ref_3673_reverse	0	0	0	0	1	3	0	0	1	0
GACCTCGCTTGAACTT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTGTAGGCCTACCCCC	ref_3673_reverse	9	5	5	3	6	2	6	3	7	6
AGAACGTTTGTATCCG	ref_3673_reverse	0	0	2	0	0	0	1	0	0	1
GCTCTTCCGTAACCGA	ref_3673_reverse	26	39	28	28	39	37	32	21	51	40
GGTGTTTGTAATTGTA	ref_3673_reverse	13	7	7	15	15	15	11	12	9	7
GTCACCGCTCGAGCTC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
GATGTCGTAGAGAGTC	ref_3673_reverse	18	29	8	16	19	21	23	17	18	11
TCCCATTTGAAGAACT	ref_3673_reverse	15	14	9	17	8	14	23	11	25	9
TTTCGATGTGATATTC	ref_3673_reverse	10	13	6	16	6	6	9	4	9	10
GTTATGCGATTTGTAG	ref_3673_reverse	29	53	43	40	62	41	54	40	58	38
CAAGTTTGCCAGCCTT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGATCACGGGTTT	ref_3673_reverse	6	14	3	6	14	4	17	7	13	5
CAAGTCTTTCACATCT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCGTGTCGTGCGG	ref_3673_reverse	29	35	14	27	33	26	38	15	24	19
GAATAGGAGCGTAACG	ref_3673_reverse	18	44	18	14	36	22	44	31	31	22
ATCACACATTCGGTCA	ref_3673_reverse	36	28	45	35	43	31	48	23	49	35
TAAGACCCTCGAACTT	ref_3673_reverse	117	130	136	80	117	82	129	105	148	87
AGAACGTTTATATCCG	ref_3673_reverse	5	8	8	7	8	3	14	5	6	4
GAGGCGTACACTTCGC	ref_3673_reverse	8	5	12	3	7	7	12	6	13	8
GAATGTCCCCATCAAT	ref_3673_reverse	27	35	19	14	34	19	28	32	24	11
TTAGAATTAGGCAGTC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
AAGGCACCGTACCCTA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTTAGACTGCAT	alt_3673_reverse	42	47	29	30	51	20	54	21	43	21
GCCGATTTGAAGTTAG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGTGTCTGGGAGG	ref_3673_reverse	4	3	0	2	3	4	1	2	1	1
CATAGCTGTTTAATTT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGGTTGCGAAAT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTTTTCCCATAT	ref_3673_reverse	17	12	16	16	28	21	21	13	18	6
ATTTGCTCGCCCTTAG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TAACTATACGTCCGCT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTTGAGGTTCTCG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
GTACCCCTTGCTCTGT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAAGCGACTGGGC	ref_3673_reverse	20	32	16	9	20	10	27	14	25	15
CGACTGCCGCGAGAGT	ref_3673_reverse	62	125	91	77	128	61	116	71	116	59
GCGCGCCTCCTCTTTG	ref_3673_reverse	26	31	36	31	46	33	40	23	44	29
CGTGACTTTTACCGAG	ref_3673_reverse	53	71	64	55	83	67	83	44	81	43
GTCAATGATTTATAAC	ref_3673_reverse	3	2	4	3	4	8	3	7	4	2
CGTTTTCGGTTCTAAC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGCATCCGTCCTT	alt_3673_reverse	9	13	10	4	11	5	15	6	25	4
TTCATGAGGTGATATC	ref_3673_reverse	8	4	11	7	8	9	3	5	14	2
TCCTTTGCAAATAATG	ref_3673_reverse	6	7	5	6	5	6	4	2	6	8
GATCCCTAACATTCTA	ref_3673_reverse	127	188	146	133	198	134	175	143	184	126
GGTACTCGGAACGCCG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTAAGGTATGAGT	ref_3673_reverse	22	32	11	23	29	21	27	12	28	11
ACCCCGCCCAAGCCCC	ref_3673_reverse	4	5	3	2	11	5	10	4	3	1
TTAGTTTTTGTCGGGG	ref_3673_reverse	11	17	13	12	14	10	13	4	22	15
CTCTGGTGTTACGTCA	ref_3673_reverse	3	1	5	1	7	3	2	3	3	2
CGCTACCACAGTGTAT	ref_3673_reverse	67	114	68	75	89	61	113	60	115	51
CACTTTTCGTAACTGG	ref_3673_reverse	6	8	19	11	3	11	17	11	9	2
GCGGGTTACATGGTGA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
GTGATGCTTCTTACGG	ref_3673_reverse	9	16	15	17	17	7	12	13	19	16
GTAGATTAATGGGCCA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTAATGGCAAATC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCTAGTATTTCAG	alt_3673_reverse	132	179	139	140	205	114	189	104	186	102
CATGAAGTCTATGAAC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAGTAATTATACC	ref_3673_reverse	16	11	13	14	19	8	17	12	14	11
AGTCATTCTCCAGCTA	ref_3673_reverse	22	32	21	20	18	29	25	14	28	15
ACTGACGCGAATGTGC	ref_3673_reverse	6	16	6	2	15	2	14	3	17	5
TGGCAGGTTTCCTTAC	ref_3673_reverse	72	91	71	66	102	65	116	55	96	64
GGACGCTCTATCAGGG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCTCCTCAGTCAT	alt_3673_reverse	19	36	20	24	42	8	27	17	29	17
CGCAAGCTGTAAACAG	ref_3673_reverse	64	90	81	61	82	53	103	60	83	53
ATACAGGCACGTGGTT	ref_3673_reverse	33	53	34	33	38	31	46	36	51	27
CCGACAGAGCCCGCTT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGCACCGTCTGGG	ref_3673_reverse	11	25	25	10	19	6	25	17	35	13
TTGGTTAACGCAGTAA	ref_3673_reverse	20	38	29	18	46	25	33	26	42	15
TGGCAACTTAAAGGCG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TATACGATACGCGCCT	ref_3673_reverse	13	18	15	11	27	7	18	11	13	10
GGGCGGCGCTTCTCTT	ref_3673_reverse	6	7	8	4	12	6	11	6	7	7
ACAATCTTGACACCTG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TACGGAGTTTAAGGGT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGAACCTCTGAAT	ref_3673_reverse	6	12	3	4	9	4	11	3	19	4
GGGCATGCGACTCACT	ref_3673_reverse	88	128	117	88	126	105	125	85	145	77
CAGTTGACTAGGGATC	ref_3673_reverse	12	13	14	14	12	12	22	11	18	15
AAACGACGCACCTTAG	ref_3673_reverse	29	28	19	26	34	18	25	20	31	16
GTCAGTTGAAGATTAC	ref_3673_reverse	36	48	43	31	46	37	53	37	64	28
TGCTACATTAAAAAAT	ref_3673_reverse	19	24	11	17	13	12	18	19	18	13
GACGATTGCATCAGAG	ref_3673_reverse	37	34	35	34	30	22	28	15	37	36
CAAATGTGGTGTGAAT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
ACTCCTGCTAGGTGTC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTTACATTAGCGTGGG	ref_3673_reverse	17	24	21	19	20	22	24	16	25	15
AATTTCGAGTTCAATC	ref_3673_reverse	10	10	17	9	8	14	11	7	18	4
TATATGTTCCGTACGA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGCCCAAACTGGG	ref_3673_reverse	5	6	5	2	13	5	4	2	6	2
GAGCTGTCATCGGTTG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGAGCTGCTTTTG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGGTCCCTGGGG	ref_3673_reverse	20	23	32	23	16	23	18	21	19	22
TTCCATTTCTGTGACA	ref_3673_reverse	24	19	23	23	28	10	23	23	23	13
GTTCAAACCTGACTTG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTGGTAACTATTG	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
ACCACCATCTTTCGAA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCTTATCGTCACGTGA	ref_3673_reverse	17	13	20	18	23	16	18	14	20	11
AGTACTGATAATCGTC	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCTCATGATCTTAGCT	ref_3673_reverse	56	62	97	79	63	58	82	57	74	63
GCAACCGGACTTAATT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
GTGCATACTCTATTCA	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGTTGGAGCCCTT	ref_3673_reverse	0	0	0	0	0	0	0	0	0	0
ACGTATCTTAGATGAC	ref_3673_reverse	1	3	8	6	1	5	4	5	4	8
GGCACCTGTTGCGGTC	ref_3673_reverse	84	120	117	81	140	85	148	68	150	88
TGTATAAGGATACTCC	ref_4037_reverse	6	15	13	8	5	14	7	8	7	9
TCAAGTTTTTATAGCC	ref_4037_reverse	15	13	18	13	24	20	18	17	16	12
TCTCCCCATTTATACT	ref_4037_reverse	30	185	48	49	198	31	175	48	200	26
GATGGCGATCTGTAGC	ref_4037_reverse	21	11	19	12	12	6	15	14	13	13
GCTCCGTATGCGTCCG	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
GTTAACGACTTCCTAT	ref_4037_reverse	71	45	61	56	33	52	46	41	44	46
CTGACCTTGGTTCTCC	ref_4037_reverse	178	146	202	177	178	147	186	165	200	143
CCGGAAAGCTCAATGC	ref_4037_reverse	113	88	107	104	83	99	75	81	72	71
GGAGAACTCATAGCAC	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
CGAGACCCAATATGAG	ref_4037_reverse	43	27	51	26	42	37	32	19	37	15
CCCTAAATTCACACGG	ref_4037_reverse	79	90	61	83	63	78	94	65	87	73
TACCACAGCGCCTTTG	ref_4037_reverse	33	46	60	33	59	35	48	35	55	35
ATACGCGAGTCTAGCA	ref_4037_reverse	53	54	52	55	50	52	59	51	62	52
AATGTTTCGGACCCGT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCTTAGGTTCTCA	ref_4037_reverse	20	18	27	29	27	29	33	27	35	16
GTTAACATTTCATTAT	ref_4037_reverse	184	115	192	178	119	180	138	153	159	146
TCGATTCAGTCGAACA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTATTAAACATCT	ref_4037_reverse	11	9	16	13	10	12	7	9	4	10
CTGTATTTTGATTTGC	ref_4037_reverse	103	102	128	147	104	117	105	114	101	130
CGCACGCAAGGCTCGT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TGATTTATATACGGAG	ref_4037_reverse	15	31	29	22	23	27	18	18	21	26
CCTGCATTGCGGCGTG	ref_4037_reverse	9	23	19	15	22	8	19	7	25	18
CAGGATAGGCCAGAAG	ref_4037_reverse	41	65	58	46	58	51	60	42	57	43
AATGTGCTCACCATCC	ref_4037_reverse	100	68	126	94	83	95	83	74	80	93
CATACATGCAAACAGC	ref_4037_reverse	44	37	51	68	43	41	59	49	45	30
TGGGGTCCTGTCCAAC	ref_4037_reverse	66	54	65	68	31	64	51	42	59	40
TGTGTATTTTACACTA	ref_4037_reverse	5	5	8	8	8	6	10	4	3	6
ATAGTGTGCGGGCTCA	ref_4037_reverse	37	62	47	43	48	41	35	31	44	40
TTTGAGTTGTGCAAGA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
CCATTGGGCTTCCTCG	ref_4037_reverse	41	33	46	37	38	27	29	36	32	38
ACTAAACAGTCGTGTC	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
GGCCAACCTGTTTTCA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTAGGTAATTATC	ref_4037_reverse	50	63	66	48	47	44	53	32	65	39
GATCGTTCCCCGTGCT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGCGTTTGTATAT	ref_4037_reverse	79	107	118	97	99	98	119	70	105	63
ATCCAGGGGTCAAACC	ref_4037_reverse	29	34	49	33	29	36	41	18	46	34
TTACTGTTCGGGGGAA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TATTTGCGGGGTTAAC	ref_4037_reverse	26	25	31	24	38	20	22	22	26	20
TACGGTACACGTGCCT	alt_2374_reverse	3	21	5	4	21	4	16	3	24	2
GCCTGGTGGGTGTGGC	ref_4037_reverse	6	14	10	8	18	10	17	8	12	7
GGCGAATATGATACGA	ref_4037_reverse	120	96	148	154	92	115	108	93	128	113
TGCAGGACTTGACGGC	ref_4037_reverse	7	5	10	9	11	8	12	13	8	6
CGTCCTGTCGGGCTTG	ref_4037_reverse	24	23	23	17	13	14	14	27	14	12
CTTAGTAAGGAAGTAG	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGCCCTACGCACT	ref_4037_reverse	25	34	42	29	32	40	31	38	44	18
AGTAATACTGTGCTCA	ref_4037_reverse	90	92	112	78	87	76	97	70	118	62
CAATTAGTTCGAGTCT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTATAGATACCGTCGT	ref_4037_reverse	28	35	45	28	38	48	38	36	42	35
GATAGCGTTACAACCA	ref_4037_reverse	3	4	3	5	3	3	2	1	2	3
GAACTCTAGGCAAAGA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
GCACACCTGGCTTTGG	alt_4037_reverse	40	27	42	36	30	23	27	33	27	39
GTTGCTAACTGTCGAA	ref_4037_reverse	33	35	46	32	41	27	41	23	43	31
CTCAAGTCCAGAGTCC	ref_4037_reverse	26	17	41	24	25	30	41	24	22	24
CGGTTTTGTTTAGTCG	ref_4037_reverse	168	143	187	143	166	159	128	150	159	138
GCTGCTCCGCTTCTAA	ref_4037_reverse	63	66	109	77	86	60	73	75	79	68
GTAGGATTTCTACGGA	ref_4037_reverse	56	44	68	54	53	40	53	41	61	37
TATCCATCTGCCTGGT	ref_4037_reverse	10	6	11	5	5	4	5	3	5	7
TATTGCACTCGGTAGT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTACGCCGTTGAT	ref_4037_reverse	47	52	75	41	48	53	51	41	43	55
ACATTGGGTTTCTGTC	ref_4037_reverse	48	41	37	46	39	36	40	36	42	34
TGGGACCAGCCCGATC	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTCTTGCTGCGCC	ref_4037_reverse	50	95	72	50	91	60	112	59	107	47
ACCCTTGCTTTTATGA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
CTCCCCTTTGACCTCA	ref_4037_reverse	0	12	1	0	4	0	16	0	11	0
GCGATGTTACAGTTGA	ref_4037_reverse	23	25	15	15	25	15	18	18	21	24
TCTTATTTGGCGTGCG	ref_4037_reverse	7	13	16	9	10	10	11	11	11	9
CCCTTTGGCAGCGAGA	ref_4037_reverse	11	6	5	6	6	5	4	5	6	2
ATGCGATTCTCCATTT	ref_4037_reverse	42	45	60	42	34	33	40	41	42	43
TCCAGTTTAAGATTTC	ref_4037_reverse	40	42	55	62	57	43	53	50	42	29
AAAGTTCGGTATCCTC	ref_4037_reverse	8	11	10	9	6	17	10	10	13	12
GTGAAATGTATTCTCG	ref_4037_reverse	25	19	22	23	19	26	16	12	19	19
GCGGTCATGCGTACTT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTTGCTACTTTGA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCTGCGGTTATAA	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
GCCTATGCTCTACGTT	ref_4037_reverse	18	19	20	16	21	17	13	12	17	11
ATCTGTGTCTAGCATC	ref_4037_reverse	23	22	33	22	52	22	21	35	39	24
AATTTCGTAAGGTCGC	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TGTATGGTAGTAGTCT	ref_4037_reverse	24	35	29	38	24	30	34	29	22	29
GTTGTGTCTCATCTTT	ref_4037_reverse	29	17	26	22	16	22	16	20	23	10
CTCTTCGACTCAGCTA	ref_4037_reverse	25	15	33	21	24	18	26	24	31	11
ACGGGCCGGCTCGGCT	ref_4037_reverse	28	34	44	41	37	33	56	48	30	28
CAGAGTACAATGGTCA	ref_4037_reverse	15	8	10	7	5	2	2	8	7	3
GTCTTAAAAAAATCCC	ref_4037_reverse	1	0	3	0	2	1	2	3	2	2
CTTTGCACTCTACTCA	ref_4037_reverse	5	6	7	4	7	8	3	1	4	5
CTTGATCACGTCTGAC	ref_4037_reverse	48	35	62	54	41	46	44	49	42	42
TGCCATCGTGTTCTCA	ref_4037_reverse	10	20	19	11	14	10	12	15	13	5
TTTCGCCATCGATTAA	ref_4037_reverse	17	16	19	15	12	10	22	5	14	7
TTACATATGTATCTTT	ref_4037_reverse	110	89	126	89	111	104	112	111	122	84
GGTCCATAGTCACCGC	ref_4037_reverse	69	80	98	68	77	72	69	65	68	66
ATCGACCACGTTCTTT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTGTTGTATAATT	ref_4037_reverse	59	73	104	85	70	62	62	77	78	70
TATGTCGCCACCTGTT	ref_4037_reverse	70	48	62	68	62	63	54	60	54	51
CAGCGTCTTCCATGTG	ref_4037_reverse	456	423	538	483	427	420	450	393	488	420
GTTTTAATGGGTGTTA	ref_4037_reverse	26	25	34	37	35	47	33	22	33	26
CCTCAATATCCCAGGG	ref_4037_reverse	26	17	37	36	31	24	30	22	24	18
TTGTATCATACGTGTT	ref_4037_reverse	2	7	2	0	3	4	5	6	4	1
TGCTATGATCTTGTTA	ref_4037_reverse	77	51	75	59	66	58	50	52	66	69
CTGCACTGTATTCCGC	ref_4037_reverse	17	19	34	20	23	24	22	29	15	26
CTTTGACGTCAGGCTG	ref_4037_reverse	2	3	2	1	3	0	2	2	1	4
GGTGTTTGTACTTTCC	ref_4037_reverse	7	8	15	14	18	14	18	13	18	9
GACGGATAGTGGCATA	ref_4037_reverse	9	12	14	10	13	13	16	5	12	9
CGGCTACACTAAGCTA	ref_4037_reverse	29	14	39	25	23	26	26	22	26	20
GTTCCCGCTCTGCCTT	ref_4037_reverse	29	23	33	25	24	26	26	27	26	43
GATCGTCTCTGTTTTT	ref_4037_reverse	37	39	47	32	27	36	29	24	16	31
GCTATCATTGACTAAT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTTATTCCCAGCT	ref_4037_reverse	25	40	33	28	22	27	38	23	37	24
ACGAATTTAGGGTCAT	ref_4037_reverse	0	0	0	0	0	0	0	0	0	0
CGGCATTGTCGTAAGC	ref_4037_reverse	39	26	45	36	28	34	34	32	28	32
GTCTAGGGAGCCCGCT	ref_4037_reverse	10	21	25	13	14	21	14	14	15	15
CTCCACGGCAGGTTTA	ref_4037_reverse	137	160	154	147	185	122	187	138	173	131
GCATATAGCCCTCATA	ref_6081_new	0	0	0	0	0	0	0	0	0	0
AAAGTCCTGTTGGAGC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GTTCCTGACTCAATTC	ref_6081_new	32	10	41	24	17	29	21	37	19	30
CAGCTCCTAGACATAA	ref_6081_new	2	2	2	1	2	2	1	3	1	1
GATTGGTATAACAACG	ref_6081_new	41	30	73	63	25	49	25	45	19	40
CTCCACTTCTGATCGG	ref_6081_new	85	34	92	81	33	67	38	70	59	37
GAATCATATATCGCCG	ref_6081_new	101	52	106	98	38	103	53	87	53	65
GTGTAGTTCACATGAA	ref_6081_new	27	11	21	25	14	22	9	18	7	21
TGATCATGACAAGCGC	ref_6081_new	83	36	110	98	65	93	29	97	32	87
GGTTTGGATTCGGTCT	ref_6081_new	152	64	162	162	72	153	67	138	64	126
CGTATTAGTTCACAAA	ref_6081_new	119	55	148	106	59	100	66	91	83	98
ATTAATCCCTGATTTG	ref_6081_new	68	25	103	80	29	76	34	71	25	64
TTTAGTTTTTATTACG	ref_6081_new	73	29	74	67	29	69	37	51	26	40
CGAGCCGAACGTCGTA	ref_6081_new	45	14	45	44	19	38	18	30	11	36
CTGGATGGAATGTGTC	ref_6081_new	255	117	318	275	141	254	112	235	142	246
GTGAGTGGGCGATCCC	ref_6081_new	38	22	56	50	24	48	25	50	15	43
GTTACGTGGCACGTGC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GTGCACGATTATTGAT	ref_6081_new	36	18	30	24	11	19	9	34	18	18
CCACTCAGGGTTCTTG	ref_6081_new	15	27	21	12	22	14	17	12	30	26
TTACCTTTCTTCCCCC	ref_6081_new	181	70	201	171	56	180	71	163	49	158
CATGCTGGCAATTTCC	ref_6081_new	30	15	38	37	19	25	13	36	7	28
CTCCGTAAGTGAATTG	alt_6081_new	269	124	309	278	121	246	126	260	161	212
CGTCGAGAGGTACATT	ref_6081_new	51	29	71	52	24	46	27	54	17	66
CTTGTAGTTCATCCGA	ref_6081_new	2	1	4	13	7	9	1	7	4	3
GGATAGTTACAACTGT	ref_6081_new	37	9	37	29	10	28	10	25	17	16
TAATGGCACGTTCACA	ref_6081_new	304	123	376	398	143	345	136	324	136	257
ACCTAAATCCAATCCG	ref_6081_new	26	17	17	21	14	21	21	17	17	16
TTCCAGCCTTCGAATC	ref_6081_new	12	7	14	23	20	8	24	21	17	19
GCGCCTGGTGTACTTG	ref_6081_new	37	23	31	35	22	44	13	36	19	30
ACATTTCAAACATATC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GATCCGAATCCGCCAC	ref_6081_new	198	72	250	237	79	200	94	169	89	207
GAATGTGTGGTTACTT	ref_6081_new	0	0	0	0	0	0	0	0	0	0
TTTAGTACGGTTGGCC	ref_6081_new	41	25	57	30	25	37	26	42	27	31
AAAATCCGCTGCGTTC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
AAGCCTACGTTCGATG	ref_6081_new	13	6	23	14	8	16	9	12	9	8
TGAGTAACGCATTTCT	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GGTCTTTAAAGTAGTG	ref_6081_new	207	102	283	211	115	227	101	219	107	223
TCGGAGAGCTGACGAC	ref_6081_new	60	26	65	64	25	49	20	47	29	51
TTTAATTTCAGATTAG	ref_6081_new	159	62	218	177	49	160	81	137	65	137
TTGTAAAATATACTGT	ref_6081_new	12	3	20	12	4	11	3	8	7	7
AGTAGATTTTTTCACG	ref_6081_new	14	5	21	15	6	16	12	20	6	12
CCTGTTGGCTCTTTGT	ref_6081_new	98	47	138	129	56	101	58	126	54	93
TCACAGCGCCCAGGTT	ref_6081_new	146	71	192	174	57	134	79	167	67	129
CACCCTAGTTTCTCTC	ref_6081_new	13	3	12	10	9	10	17	8	14	8
CCATTTAATCGGATGC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
ATTTAGAAGTTTAGGT	ref_6081_new	247	100	310	229	110	252	130	225	143	231
TCTGCTAGTTACCTCT	ref_6081_new	0	0	0	0	0	0	0	0	0	0
TTGAACCTTACGCCAA	ref_6081_new	0	0	0	0	0	0	0	0	0	0
AACGATCGCTGGTTCT	ref_6081_new	172	58	137	142	56	112	57	106	58	96
TAGGTGCTTTGGTTAC	ref_6081_new	85	53	107	101	52	83	43	98	67	76
TCCAGGATGCTGGTCG	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GCAGGACGCAGGGGAA	ref_6081_new	407	148	517	403	180	393	169	385	215	313
GAATCTGCGTCATTAT	ref_6081_new	71	41	73	78	39	81	34	85	44	62
GTCATCTTCTACGCTT	ref_6081_new	17	10	21	17	9	14	12	15	6	16
CCGATTAAAATGGTAC	ref_6081_new	31	7	29	38	12	26	9	29	12	26
GTATGACTCTCGCCGT	ref_6081_new	0	0	0	0	0	0	0	0	0	0
ATTCCGTTGCATTCGT	ref_6081_new	11	2	10	15	8	10	6	23	1	5
AATGACCTAGCATAAA	ref_6081_new	134	57	138	154	58	93	43	112	53	98
ACCCCTCCCGCTCCTA	ref_6081_new	65	25	84	75	41	57	38	93	39	75
ATTAGAAAGCAACTAC	ref_6081_new	23	9	27	26	14	26	14	22	17	12
AGATCGGTTTACTTCG	alt_6081_new	44	14	58	53	29	39	26	56	22	56
AGCTCTGATGTGTCTT	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GATTATGTGTCTAGTG	ref_6081_new	92	41	113	104	42	83	63	78	36	83
CTCCACAATTTGGTTT	ref_6081_new	13	7	25	13	3	11	12	17	3	14
GCCTGGGCTTTTAGAT	ref_6081_new	78	47	99	93	35	73	43	90	36	78
CATGCTTTGTCAGCCT	ref_6081_new	13	4	18	19	10	18	13	8	9	22
CGTGCCGCGAACTATG	ref_6081_new	92	70	137	150	45	114	64	128	48	116
CAAAGTGAATGTCCGG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
ATCACCCATTTCTTCT	ref_6081_new	160	56	222	178	79	125	80	171	76	165
GTAAGCCCACACTCTA	ref_6081_new	44	15	52	53	15	44	11	34	22	34
CCGGGTCCCGCTGGTC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GGCTAGTTAGTTTTAT	alt_6081_new	218	103	285	225	99	212	104	205	117	173
TCATAGGTCAAGTCTT	ref_6081_new	2	0	0	0	0	0	0	1	0	0
TGTTTTCGATAGGTGC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
CCGGAAGAAAGAACTG	ref_6081_new	59	23	67	35	24	59	22	39	28	48
CGGCATTCGGTGCCCA	ref_6081_new	0	0	0	0	0	0	0	0	0	0
ATTATTCTCCTAGCCG	ref_6081_new	25	15	44	32	23	30	16	21	12	25
CGAGCAGTAGTCCATC	ref_6081_new	85	32	100	111	45	71	36	85	34	78
GTATCTGGATTCTGTG	ref_6081_new	2	0	3	4	1	1	3	4	6	2
AGAGAGTGTTCGTCGT	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GTTTATAGCACCACCG	ref_6081_new	0	0	0	0	0	0	0	0	0	0
ATATCTCATTCTCAGG	ref_6081_new	205	94	251	243	62	170	79	197	101	193
ACCACTCAGGGGCGCT	alt_6081_new	550	320	723	666	350	600	364	605	341	546
CCCCAGTAACACTCAA	ref_6081_new	55	44	70	71	51	61	58	59	54	59
TGATCTCTAACTTTGA	ref_6081_new	34	8	31	21	6	20	11	22	8	21
TTTCGGATTTTCGTTT	ref_6081_new	19	8	28	27	8	30	10	27	14	26
GATAAAGATGATTTAG	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GTGGCCTTCCTTTGCG	ref_6081_new	51	19	69	60	38	59	22	62	24	81
GGCTCCTTATTAGTGG	ref_6081_new	0	0	0	0	0	0	0	0	0	0
CCTTCTAGTAATATCC	ref_6081_new	25	12	42	30	15	38	18	34	21	34
ATTAGTTTGCAACCTC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GGTCTCTGGTGCAGCG	ref_6081_new	233	104	306	252	82	224	128	229	137	224
AGAAATTGGTTCTCTG	ref_6081_new	19	10	20	19	14	12	10	25	7	16
TACTCTCACGACCCAT	ref_6081_new	32	11	24	21	14	33	17	19	13	20
CCTTTTGCGGTTCGTA	ref_6081_new	42	15	47	46	17	28	29	36	19	28
TAATTGGCCGACCATG	ref_6081_new	4	6	8	3	6	4	10	1	9	4
ATTTGTGATGTCGAGC	ref_6081_new	134	49	181	139	55	168	50	148	71	116
CGAGGGTAGCTTCTAG	ref_6081_new	125	47	180	136	39	115	55	118	60	116
AGCACCTCACCATTTA	ref_6081_new	43	19	56	36	28	38	12	40	26	35
ACGGTAATGATCTCTG	ref_6081_new	147	43	189	133	64	159	49	138	64	121
TCTCCCTAGATTCTCG	ref_6081_new	33	13	43	35	8	28	12	32	26	28
GACTTTTTTCGTGTAT	ref_6081_new	28	18	40	40	14	33	12	25	20	28
ATTTCGTGATGAATCC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
TAGATTCCTCGATGTG	ref_6081_new	0	0	0	0	0	0	0	0	0	0
AGTCTCTCGCCACAGG	ref_6081_new	4	6	8	10	0	3	3	8	5	6
TGGGCGGGCACCTGCT	ref_6081_new	22	10	21	16	4	19	3	10	11	12
GTTTGCATCGGCCACC	ref_6081_new	7	11	16	13	7	15	5	13	9	16
ATTATTCCACAAGATG	ref_6081_new	588	246	672	600	260	544	248	536	226	478
TTAGCCGAGCAAGGAC	ref_6081_new	491	254	578	485	261	400	242	430	229	391
GGCTAGCTGTCATGAA	ref_6081_new	0	0	0	0	0	0	0	0	0	0
GCAGGGATTTATGGTC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
TTAGCATAATAGACGG	ref_6081_new	0	0	0	0	0	0	0	0	0	0
AGGTATGTCTCCCCCC	ref_6081_new	163	69	223	209	98	168	70	178	103	130
CAGAGATCTACGGAAT	ref_6081_new	216	89	248	221	114	196	79	185	100	177
AGTTTCTTGAACAAAC	ref_6081_new	17	6	26	33	11	16	11	20	6	27
CATACCACGCCGAACT	ref_6081_new	8	5	10	8	2	8	4	5	1	7
CAATCTTGTTCACGAC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
TCCTGTGATGGACTGT	ref_6081_new	80	45	79	69	49	83	46	54	45	69
TGCGTAGACATGTGGT	ref_6081_new	75	31	118	68	44	67	31	77	39	66
ATGGCACCGGCCATGA	ref_6081_new	59	26	78	73	25	59	34	64	19	56
CATCCCGCGCGGGGTG	ref_6081_new	47	34	39	54	23	41	27	43	31	47
GCGAGATTGTGTAACA	ref_6081_new	37	10	35	25	14	32	13	26	4	25
GGTGATGTGGGTCGCC	ref_6081_new	43	18	54	54	27	37	23	37	12	27
GTAGAAAACCGTCTTG	ref_6081_new	0	0	0	0	0	0	0	0	0	0
TTCAGGACGACCCTAT	ref_6081_new	29	9	34	33	16	22	14	36	9	36
ACGTCAAATCTCGCTT	ref_6081_new	33	29	58	43	23	40	23	30	15	37
GGTTAATGATCCGTAT	ref_6081_new	90	35	94	88	41	79	37	62	27	77
CTCAACTGTGTACTTC	ref_6081_new	0	0	0	0	0	0	0	0	0	0
TACTGGCCAACTTGTA	ref_6081_new	59	37	79	101	42	53	21	68	39	70
TTGCCAGTGTTGACGC	ref_6081_new	64	23	107	93	40	65	39	69	41	58
GTTATTTATTTGAACG	ref_6081_new	140	63	184	152	59	154	81	178	80	126
GTATGTCTCCGGGCAT	ref_6081_new	0	0	0	0	0	0	0	0	0	0
AGACACTCCATCAGGG	ref_6081_new	21	54	31	36	69	23	52	29	62	25
TCAGCCTCTTTCTCCT	ref_6081_new	12	15	11	12	13	3	14	5	22	6
GGTTTCTCGTTTTTGG	alt_5756_new	4	16	12	8	24	16	8	9	8	7
TGTCGTGCAAGTGCCC	alt_5756_new	12	42	28	11	42	24	50	12	56	14
CACAACTCGTGCCTCG	alt_5756_new	4	3	4	2	7	4	10	8	4	2
ACTAGGTTATTCGGCC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
GCTTGGTACCGCTTGA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TCGAGGCGTTTATGCC	alt_5756_new	8	24	21	26	33	17	38	25	35	10
CCCACTATTGTGTCCA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CATACGCTTGGCTCTA	alt_5756_new	4	13	5	7	20	2	20	6	11	7
CAGTTAACATTCGTAC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TTTCTCGAATCCCACG	alt_5756_new	2	5	4	3	13	4	7	6	5	4
AAGCCGACCTATGTAC	alt_5756_new	7	18	5	10	19	3	11	8	12	10
ACATCTGCAGGCTTCT	alt_5756_new	22	60	38	17	43	24	47	26	47	23
CGAAATGAAGTGCAGC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CCCATGAGATACCTAC	alt_5756_new	7	14	5	5	17	5	17	0	14	6
AATAGTTTGTCTCGGC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TCCATTCTGCGAGTGG	alt_5756_new	7	14	8	7	14	9	18	10	10	5
GGCCGTAATTTTCGGT	ref_5756_new	145	214	138	146	247	139	270	144	271	143
CAGCATGCGATTTTGG	alt_5756_new	31	67	41	24	70	42	67	29	65	27
TTTTTCCGCTCGCACG	alt_5756_new	10	16	7	10	9	12	19	7	20	4
CATTCGATTTTGGAGA	alt_5756_new	22	41	30	38	56	23	62	25	48	19
TGTTTACATTGCACAT	alt_5756_new	21	45	23	20	34	21	25	16	43	17
TAGAGTTACTCGCCAA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
ACCGGCCTAACTACGC	alt_5756_new	2	27	5	4	25	3	37	3	44	4
CATTCCGGCGGCATAT	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CAGACCCCAGATTACC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TATTCTCCCCATGATA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TGATCACTTTTCTGTT	alt_5756_new	31	56	35	33	63	28	60	28	51	28
CCCCCGCCGCCAGACC	alt_5756_new	9	20	8	6	31	11	18	11	19	14
CCGGTTAAATTCTGCT	alt_5756_new	6	41	5	5	50	4	46	7	29	5
TGCGGTTAAGGTGTGC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
AGTGGGTCGGTCTTCT	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TCAATTAACTAGCATA	alt_5756_new	24	53	46	30	55	28	41	28	69	27
TATTCGTCAGTCGATT	alt_5756_new	37	51	38	27	57	33	56	29	46	32
TATTCCGCTATGCTCA	alt_5756_new	1	6	5	1	2	6	8	1	5	6
TGATAAATGTCGAGGA	alt_5756_new	5	8	5	5	6	4	7	5	12	2
CCCCTGGCGTAATAAC	alt_5756_new	34	88	49	47	86	37	90	55	86	33
ACGTGCTGCCGAGTGC	ref_5756_new	28	52	27	31	63	19	37	12	56	30
GGCTTCATCGGGTGTG	alt_5756_new	8	19	17	10	28	15	34	12	18	11
GGGGTCTGTAGCACTT	alt_5756_new	13	31	17	16	28	11	34	15	36	8
ATTCTTCCGCCCCGCC	alt_5756_new	16	19	28	20	26	9	33	26	24	18
GCGCAATCTCCATTCG	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CAAGGATTGTACACTC	alt_5756_new	6	54	5	3	65	4	50	8	66	2
TGGAAAAAATCTCTTA	alt_5756_new	10	21	6	12	24	6	17	17	22	8
ATGTGAGAATTTGAGG	alt_5756_new	42	61	30	22	53	29	52	23	47	20
TTGCAATGGTATAGCG	alt_5756_new	11	24	21	5	26	15	14	6	20	12
ATCGTCTGTCGTAGTA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
AATGTCATCACATTGT	alt_5756_new	12	18	24	26	34	20	24	17	32	15
CGATGACATAATCGCT	alt_5756_new	7	20	9	8	6	7	9	11	11	12
ACGCACGCTACGTTAC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CTGATATGACGCTCCA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CTCTACAATCTGAATC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TTTAGTGTGAGCGGAT	alt_5756_new	25	59	34	28	61	21	44	28	60	26
TGTCGACGATGTTAAT	alt_5756_new	22	39	24	26	41	28	52	16	58	22
TGAAACATCATGCATA	alt_5756_new	16	36	33	21	41	20	37	19	53	22
CCTCTTCGCACCAGTA	alt_5756_new	10	6	7	3	13	3	8	2	6	3
CGAAGTGTTTCATATC	alt_5756_new	11	20	15	10	20	13	24	14	18	11
GAGTGTTATACAGCTC	alt_5756_new	11	7	12	10	15	6	21	3	16	5
GGTAGACGCGCCACCT	alt_5756_new	59	103	56	60	102	46	104	56	96	54
AAAACTGCTGGGGTAG	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TACGCTTCCGGTTCAT	alt_5756_new	22	35	41	23	70	27	36	23	53	26
TGTCAAAGTCGTCCCG	alt_5756_new	3	5	7	6	2	10	14	2	6	8
TGTGATTCGTGACAGG	alt_5756_new	13	39	23	14	30	18	32	11	32	24
CATTCCAGTACGTTCC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CTTTCAATAGCGAACT	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TAACGATTTTCTATCG	ref_5756_new	17	23	24	14	36	24	27	7	39	15
TAGCTGCATCTGTTTC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
GCATCCTGCTTCGTTC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
AGACCATCGTGTCCCT	alt_5756_new	13	59	26	19	52	17	55	23	64	25
TATAACTTGGTTAAGC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TGTTACTATTGGATTC	alt_5756_new	135	281	167	143	229	138	295	114	270	114
GTTACTCTTTGCCATC	alt_5756_new	5	6	5	10	7	4	14	0	13	1
CTACAATTTGTAGTAG	ref_5756_new	48	137	63	56	100	49	124	47	124	51
TACGCAAAAGCCGTTA	alt_5756_new	2	7	2	2	5	2	7	2	6	1
TTAGAATCGTTTAACC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CTCAACGTTCTAATCG	alt_5756_new	0	9	2	3	11	3	8	2	15	5
CTGAGAAACCCGCGAC	alt_5756_new	24	37	22	15	41	9	32	11	56	14
ATTCGTATGGGTCGTC	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CTCAGATGAGTAACGA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
ATAATATAGTCCTGGC	ref_5756_new	24	40	30	21	42	17	46	18	35	10
CCCTTGCGACCCATCA	alt_5756_new	10	15	7	11	18	5	18	3	22	6
CTGTTCTTCGCCCCGG	alt_5756_new	10	16	8	13	18	11	20	11	13	15
AGGTCGGCAAGCTGAG	alt_5756_new	18	45	22	18	42	16	45	21	45	12
GACACAAGACACATGT	alt_5756_new	18	19	16	10	9	9	11	10	18	17
CCGATAAAGACTTGTG	alt_5756_new	44	78	48	38	99	43	86	33	93	23
CAGTCTATTTGTGTAC	alt_5756_new	8	15	8	7	23	7	24	5	22	9
ATCAGCACATGGGGTA	alt_5756_new	0	0	0	0	0	0	0	0	0	0
AGATGCTACTCGATTA	alt_5756_new	6	9	11	8	16	7	9	7	26	5
AGAGTTCGAGGACTCG	alt_5756_new	9	21	8	12	19	9	16	11	15	9
CTTTCGTTCCCACCGA	alt_5756_new	61	185	86	86	195	67	217	79	235	75
AAGCGACATTAAACCG	alt_5756_new	54	101	51	46	104	45	100	55	91	50
CTTCTCGGATGGGTTA	alt_5756_new	14	25	15	14	32	16	24	16	31	17
ATTGGTGGTAGGAGCC	alt_5756_new	41	89	45	39	69	53	91	34	89	51
CCAGTCGGTCCTCTGG	alt_5756_new	12	73	9	10	91	6	56	7	73	9
TTACCTTCGGTAATCG	alt_5756_new	44	81	52	36	80	43	71	31	74	33
AGTGGTAGTTAAACAT	alt_5756_new	0	0	0	0	0	0	0	0	0	0
CGGGTGGCTGACGTGT	alt_5756_new	9	13	7	12	10	5	17	10	21	5
CGCCCAGAATTAGCAT	alt_5756_new	0	0	0	0	0	0	0	0	0	0
GGGTTAATTTATGTAC	alt_5756_new	2	6	5	0	3	2	3	3	2	5
AAACAGAAGAGTACTG	alt_5756_new	22	42	21	38	58	26	48	30	42	17
CTATGAATATAAGCTC	alt_5756_new	9	30	19	11	38	12	29	7	29	9
TCATTGCATTAACCGT	alt_5756_new	4	5	4	2	8	3	10	5	11	4
CTAACTAAGCGACGTG	alt_5756_new	8	11	13	12	21	10	18	10	21	13
TATATTTCTGTGGCTG	alt_5756_new	9	20	9	9	23	11	15	14	32	9
GGTTCACAACATAAGC	alt_5756_new	28	40	26	28	52	24	50	26	57	13
TCAGGCGAGATACCAG	alt_5756_new	15	49	24	10	50	19	42	22	47	20
TACAGTAAAGTTCGTT	alt_5756_new	0	0	0	0	1	0	0	0	0	0
TTCAGCACATGGGGTA	alt_5756_new	294	579	398	367	589	325	673	270	660	302
TCGTACTCCGTTGACT	alt_5756_new	11	12	8	8	12	5	22	11	16	9
GGTGGTTGTAAAGAAG	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TTAATATCGCCGGTAG	alt_5756_new	10	29	22	15	19	18	22	15	31	12
TTGCCGGCACTGGCTG	ref_5756_new	26	40	23	19	48	17	33	23	42	24
AACCTATACTCCGAAC	alt_5756_new	10	31	17	17	21	13	30	10	39	9
TTTGTTTTCATGTTAG	alt_5756_new	70	88	72	75	102	41	142	61	99	59
ATCTTTACCCCCGCCC	alt_5756_new	7	29	21	10	25	19	37	21	20	18
ATTTCTTGTCATTAGT	alt_5756_new	0	0	0	0	0	0	0	0	0	0
TGGTCCAGCTTCATGC	alt_5756_new	10	32	12	13	32	10	38	7	28	18
CTGAAGTATGAGCTCT	alt_5756_new	9	20	14	26	30	11	32	10	29	7
TTATGTTTCTGCTAGA	alt_5756_new	12	17	16	9	29	21	15	10	19	11
AAAGCGTTTTTGCGTC	alt_5756_new	41	105	57	55	102	49	97	54	100	29
TTCTTGGTGACCGTCG	alt_5756_new	0	0	0	0	0	0	0	0	0	0
AGGGCTGAATCGCTTT	ref_5756_new	44	89	45	36	73	40	79	29	71	39
GTATCTTATACCCCAC	alt_5756_new	1	2	1	0	1	2	1	1	1	0
ACGGACGCACATCGCG	alt_5756_new	46	83	44	42	96	51	86	45	92	48
TGTCGTTCTTTTTTAC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CGATAGTCCGGAGACT	alt_5_negative	12	17	13	15	18	13	25	2	17	6
GGTCGCTCACCCTCCA	alt_5_negative	20	22	19	25	16	16	21	14	21	12
ATCTACCCATTTCCCG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
AACTGGCCTGTGTGGC	alt_5_negative	2	3	0	7	4	0	6	0	4	3
CTCGCACCGGTTGGCC	alt_5_negative	28	56	36	41	59	34	47	17	39	27
TAGGGCCGTTGATCTC	alt_5_negative	16	30	15	21	21	26	35	11	30	18
CCTGAACAGCCTCAAT	alt_5_negative	49	78	63	44	77	57	68	57	75	43
GTAGAATGTGGCCACC	alt_5_negative	24	45	30	25	34	20	38	29	42	23
TTTATCTCGATACGCA	alt_5_negative	102	149	126	131	154	85	153	79	149	111
GTTATAGCAATCGAGT	alt_5_negative	28	40	26	19	27	28	35	20	27	25
GTTTTACTGATGTCAT	alt_5_negative	253	310	319	256	327	252	330	282	332	256
AAGACCGCTTTGAAAT	alt_5_negative	31	40	31	24	32	28	44	23	48	20
TGTCTTTTATGCTGAG	ref_5_negative	72	114	83	71	116	78	102	65	127	64
TTTATTTGCCTTCAGA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GCCCTGCGCAGCTTCA	alt_5_negative	6	11	20	8	15	20	18	9	15	6
CTTATGGAGGGTTTTT	ref_5_negative	119	166	147	124	171	139	166	113	149	136
GCATTCCCCGCCCCAC	alt_5_negative	24	65	41	31	73	23	78	29	75	21
GAATGGCCTCTCAAGT	alt_5_negative	8	7	11	12	20	12	14	14	17	11
CATAGGGGATTCTAGG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TGATCCGAGGTTCCCG	alt_5_negative	3	4	1	4	3	2	1	0	1	1
TTTCAACTGGTGTATT	alt_5_negative	15	19	14	12	20	18	29	14	14	7
TAGTAGTCTATTTATC	alt_5_negative	16	26	22	10	31	13	27	25	24	19
AGATTCAAGGTACTGA	alt_5_negative	17	25	14	10	22	20	34	8	16	13
TTGACCCGCCGTTAGT	alt_5_negative	23	28	32	33	27	16	25	16	31	22
TCTTCTTATCGTGAAG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GGTTGGCTCGGGCTCG	alt_5_negative	32	22	26	29	33	29	27	25	30	24
GGTTTTTTCACGGTTT	alt_5_negative	9	18	15	7	24	9	17	13	26	6
GCTCCAGGCTAGCAAA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CGTCAAGTAGGGACAG	alt_5_negative	42	58	37	34	49	40	46	24	48	27
TGCCTGAATGGTCTTA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CATGTTGGATACCTCC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TGATCTAAATCTGAAC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GCACCAGATTCACTTG	alt_5_negative	39	77	37	31	68	18	100	30	86	29
ACCATACTGTAGTGGA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GTAAATGCCTCGAGTA	alt_5_negative	7	19	20	11	11	14	15	6	18	10
AATTGTTGGTGTTTGT	alt_5_negative	55	79	57	68	76	53	84	38	84	44
GCTAAAATCAGTATTA	alt_5_negative	49	49	56	39	73	43	51	40	58	39
CTAGGCAGGGGAATTC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
AATCTTCCGATATTAT	alt_5_negative	57	66	54	55	60	51	53	55	69	41
TGTGCACCTAAGGGGA	alt_5_negative	30	40	34	28	63	46	58	25	51	47
GGTATCGCCATGTCGG	alt_5_negative	5	1	8	6	2	3	5	5	5	4
CATTCCTGGCACAGCA	alt_5_negative	30	48	38	43	45	38	64	32	54	32
AAATTTGCTTGCTGTT	alt_5_negative	90	128	145	117	106	94	137	86	164	82
TGTTCCCTGAGGTTAT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ACGATCCCAGTAAATA	alt_5_negative	9	17	15	14	17	14	16	15	15	12
CCTGGGTATGAAGCGG	alt_5_negative	15	13	14	19	26	9	31	13	22	17
GTTCGTTTGATTGTCT	alt_5_negative	28	45	26	29	19	25	33	10	38	23
TCCATGTGTATTGTTC	alt_5_negative	23	16	12	16	20	10	18	18	22	13
AGGGGTCCGGGTCTGC	alt_5_negative	23	17	23	22	24	22	14	16	13	11
GGTTTAACATGACACA	ref_5_negative	50	30	43	29	48	25	54	28	50	21
CTACACGCGTCTCATT	alt_5_negative	20	35	33	34	21	27	43	26	37	21
CGGTCTCACTCCCTGC	alt_5_negative	13	41	8	7	36	5	33	8	34	6
GTGGTTGCCCGCTAAT	alt_5_negative	4	15	4	16	13	12	11	9	21	6
CGTTCTCGTATGGCGT	alt_5_negative	43	42	72	44	46	46	64	40	65	40
GCAGTGATTTCCTTTG	alt_5_negative	17	18	16	9	19	10	34	4	16	10
GTTTGTCCCGCTCCAT	alt_5_negative	31	29	27	38	19	46	27	22	35	25
TAACCTCGAGAGGTTC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
AGCCCGGGTAGTGTCG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ACCTCGATTTACATTT	alt_5_negative	34	44	39	34	38	29	34	22	48	20
CTCGTGGTTTGAAATG	alt_5_negative	25	32	27	19	25	24	34	20	41	18
TACTTTATCTGAACCA	alt_5_negative	80	115	123	75	93	97	119	53	109	82
ATTTCGCTGCCTTCAT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TTGACGGGGCCAGTCG	alt_5_negative	48	51	63	45	74	54	71	55	77	30
CTTGATTTTAAGACAT	alt_5_negative	10	14	17	16	20	7	19	7	12	9
CAGAGGAGAATCCTCT	alt_5_negative	50	69	57	47	67	41	64	41	68	45
ATTGTGGAGCATAACA	alt_5_negative	33	43	33	42	49	25	33	23	39	37
AGTGGAATCTGAGTTT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ACTTTATTCCTTAACT	alt_5_negative	23	28	29	37	42	26	31	22	39	26
AGCCCTTCAACTTTAT	alt_5_negative	27	32	38	26	34	17	49	24	49	23
TTATCAATGGGATAGC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CTAGCTCTCTTCGGCC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GTCGGGGAGGGCGAAA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TCGTGACTCTTTGGAT	alt_5_negative	15	12	8	17	19	11	27	15	20	10
AGCACGGCCCGGTTCT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ACGCCTCACAGCCGGT	alt_5_negative	10	11	8	3	9	5	14	6	10	6
CCGCCGGTGACCCAAA	alt_5_negative	10	12	8	8	9	5	28	3	7	1
GGTCACGTGGTACAAG	alt_5_negative	32	38	39	39	38	27	44	31	47	20
GTACTGGTGAAGGCAG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TGAAGTATTTGTCCCC	alt_5_negative	21	19	19	15	26	19	18	13	25	19
TTATAGCTGTGACGGG	alt_5_negative	12	24	12	13	19	11	14	16	15	6
CCCTGCGTCTATTCTA	alt_5_negative	3	10	0	4	8	1	7	3	10	2
TTTTCAGCCATACTGT	alt_5_negative	5	18	14	13	11	9	19	9	14	10
CGTGGTTTATCATCCA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TACGAGATAATAATGG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CCGGAACACCGCGTTT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ACGAGGGCGTCGTCGC	alt_5_negative	7	14	5	7	7	3	5	6	18	6
GAGTTTCGCTGTTACT	alt_5_negative	36	30	29	18	36	22	22	21	35	27
TCTCAAAGTGCAGCAT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TAAGTGGACAATCAAG	alt_5_negative	21	36	34	15	23	20	19	20	28	17
CCGCTCAGTGTAATCC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GATCGGTATAGACATG	alt_5_negative	1	2	0	3	2	0	0	0	1	0
ATTAGAGTGCGCTTGA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GATTCAGCATATCGCT	alt_5_negative	42	55	54	32	55	40	64	30	65	34
TTTATCATCTTTATCC	alt_5_negative	27	48	38	27	45	33	45	34	56	21
GTTCTTAGCTCCAATT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GGCTACGTCGGGAGCC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TGCTGACATCTGTGAC	ref_5_negative	49	56	63	52	86	41	82	46	82	41
GTACTTCAATATTTTC	alt_5_negative	30	16	26	12	13	10	13	16	19	14
CGCTTTCATACGGCTA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TCTAGTAAGGCCATGG	alt_5_negative	15	14	9	11	27	3	9	5	19	9
TCATGGGTCGGTCTGC	alt_5_negative	11	14	6	12	11	8	4	14	16	8
CTCCTTAAGTTCGCGG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CTTCATGGACCGCCTG	alt_5_negative	8	10	9	4	11	10	6	6	4	5
ATCTGGGGACTGCAAG	alt_5_negative	19	33	27	19	29	18	20	15	30	22
ATTGCGTGGAGGCCGG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TGTAACCATGGTAGTT	alt_5_negative	24	35	31	27	32	30	31	14	32	22
GCGTTCCTCGGTCGCA	alt_5_negative	1	2	7	5	11	1	1	7	4	4
GGTTCGGATGCCGGCG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
GAAGCACCATTTATAG	alt_5_negative	98	127	141	116	180	119	134	129	136	105
CTTCTTAGCGAACTGC	alt_5_negative	137	179	135	121	162	121	170	126	195	106
TCTGCGCTTTGTATCT	alt_5_negative	18	69	34	31	72	28	75	27	87	24
GGTTCAGAGCAGCAAC	alt_5_negative	20	20	27	22	30	18	29	26	24	18
GGACTGGTTGTCATAT	alt_5_negative	33	44	43	40	34	23	53	38	45	37
CCTCCACTCCAGTAAC	alt_5_negative	46	49	38	27	45	42	43	33	53	31
TTTCTGCGTCTTCTTT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TCTGCCAGCCCGGACT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ATGCGTGAATTGTTGA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
AGCTCTAAGGCTTGAT	alt_5_negative	1	3	1	2	2	5	5	8	1	6
TCTTGGCGGTCCTTTA	alt_5_negative	15	19	27	12	20	12	19	14	22	22
TTACACATCGTTTGTT	alt_5_negative	33	60	43	38	63	32	50	24	51	27
GTTCGCTTACGGGTGC	alt_5_negative	69	58	73	57	85	54	82	55	64	57
GGCTCATGCTCGAGTT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CTTCGAAGTGTACATA	ref_5_negative	6	42	26	16	45	13	58	9	45	17
GATGAGAAAGGCAACG	alt_5_negative	3	2	4	0	0	1	2	2	0	3
TCATGCGGGCCTAACA	alt_5_negative	11	5	21	14	16	10	16	13	11	7
TGCTGTACGGCCTGTT	alt_5_negative	14	13	23	21	17	22	24	16	18	17
TTTTTACAGAGCTTAT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ATACGTCAGCTTTGCC	alt_5_negative	5	8	17	12	13	10	15	12	12	11
GCGGCTTGGACGCCTT	alt_5_negative	39	48	48	42	39	30	40	30	54	40
AAACTGACTGAGGGCC	alt_5_negative	39	56	50	53	55	43	67	47	67	42
GGATGCTATTTAGGGC	alt_5_negative	4	10	14	11	15	10	14	16	11	6
AGTACATATAGTCCGG	alt_5_negative	12	6	10	8	18	12	16	13	16	14
TTTGTCGCAATCTTTT	alt_5_negative	37	44	50	45	39	33	25	38	43	47
ACGGTTTGACTCGGTT	alt_5_negative	44	47	47	30	63	31	49	28	58	28
ATGAGGGCGGCTCTGG	alt_5_negative	0	0	0	0	0	0	0	0	0	0
ATGTAATTCCTTTCTG	alt_5_negative	42	47	58	37	65	37	55	46	61	36
GGGCACTCGCCCGCCA	alt_5_negative	1	2	4	1	1	2	2	0	0	0
TTCAGGTCTTGTCATT	alt_5_negative	22	23	33	12	22	14	23	16	23	14
GGGGGCGTTACATAGG	alt_5_negative	36	44	52	49	52	33	57	32	63	30
TATATAATTGGTTAGA	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TTTGGCGGTTGTGCAG	alt_5_negative	16	18	24	11	20	17	30	16	26	14
CTGTACTCTGTTTGAG	ref_5_negative	38	52	39	35	69	27	72	28	50	44
TTTCTGATATACCGTA	alt_5_negative	21	14	34	23	27	14	19	12	24	14
AGTTCCGTGTCTGACG	alt_5_negative	22	27	25	20	26	16	24	11	22	18
AGTCTGCTCTAAGTCC	alt_5_negative	0	0	0	0	0	0	0	0	0	0
CCCTATCTATTCGGTA	alt_5_negative	4	4	2	1	9	1	6	0	1	1
CTAATGTTATGCTCGC	alt_5_negative	34	26	37	29	29	26	43	21	41	10
GCCTGGTACCGAGAAT	alt_5_negative	0	0	0	0	0	0	0	0	0	0
TTACTCAGCATCCTGA	alt_5_negative	97	105	109	86	138	83	109	91	104	77
GGACGCTATGTTTTCA	alt_5_negative	29	48	32	31	30	28	39	36	30	28
TTGCTTGTATCTTTCC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGATATCATTGGC	ref_3829_reverse	16	22	28	17	19	15	30	16	36	16
TGGTTCTCCTTTGATA	ref_3829_reverse	9	13	8	6	10	7	13	9	2	6
TAACCATTTGCAGCCA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TATACAAATCAGGCTC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCCGCTTCACGTC	ref_3829_reverse	25	24	26	28	35	18	41	17	27	13
GGAGTTGTTAGGTCCC	ref_3829_reverse	29	22	31	42	33	23	16	18	24	33
TTTGGGTACTAATGGT	ref_3829_reverse	24	38	38	27	40	32	46	19	44	25
ATATGATTTCCCGCTA	ref_3829_reverse	44	56	57	51	65	46	57	43	68	44
TTCAATCCATGCCAGT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTTGTCTTCACAA	ref_3829_reverse	7	20	17	5	18	8	22	7	24	12
TGCTTTGGTGTGGAGG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCGTTGATTGTAC	ref_3829_reverse	24	27	16	10	24	12	35	20	32	11
ACGACCTTTTGTCGTT	ref_3829_reverse	2	3	4	7	0	1	0	5	3	3
TTTTACTGCAGCATCA	ref_3829_reverse	89	95	111	71	102	81	120	65	91	76
CGAAGGAGTCTTCAAC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
ACATTCGCTAAAGGCA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TAAGAATCGGCACAAG	ref_3829_reverse	29	43	24	25	44	25	54	27	52	31
ATGGCGTCCAGTCTTT	ref_3829_reverse	12	19	15	19	21	16	20	17	22	10
AAGAATTTCTTCTGTC	ref_3829_reverse	17	15	17	16	21	28	13	16	23	13
TGTATTGACACAACGG	ref_3829_reverse	20	23	23	19	18	12	18	16	22	18
CCTGTACTCCCTGCCT	ref_3829_reverse	1	6	4	6	11	5	6	2	10	2
ACCACTACTCAACTGA	ref_3829_reverse	4	5	7	4	8	6	3	1	2	5
GAGTACACGACCCAAA	ref_3829_reverse	3	8	8	2	9	7	17	7	10	5
AATGTGAGACTGCGTT	ref_3829_reverse	34	30	24	30	37	32	27	28	40	29
GCGTCATAGCGTCACT	ref_3829_reverse	17	18	28	14	26	10	21	12	17	14
TGTTTGACCTTAGCAT	ref_3829_reverse	24	21	17	17	24	12	29	15	19	16
CATTTGACAGTCTGAA	ref_3829_reverse	5	11	9	3	8	4	10	5	17	6
ATCCGGCCATTCTGCA	ref_3829_reverse	10	20	18	18	23	18	20	6	24	14
GTCCTGTCCCTTGGCC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TGTGATCTTGGTGGTG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGCTATTCGGCAACTT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AACCCGTGTTGCGGCG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TAATTAATCGAGAACA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGGCCGGCATATC	ref_3829_reverse	36	34	45	41	36	33	32	31	38	21
TTTGTGCTGGCACTTC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTATAATCTATTGCTT	alt_3829_reverse	21	24	20	13	16	11	18	15	34	7
TTTCCACCCTCCCGAT	ref_3829_reverse	18	23	24	21	22	12	22	16	18	13
GGAAGGCTAGCTTCTG	ref_3829_reverse	8	16	9	9	20	12	14	14	16	11
GCCAGCGGCACGATGG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGTTTGGACATGC	ref_3829_reverse	30	40	46	19	28	26	31	26	36	13
TTTCAGGATGACTCTA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCAGTTTAAACAG	ref_3829_reverse	20	30	26	15	24	20	25	25	27	12
AATGGTTTGCTCCGGG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CAAATGTACTTCACGC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AGGTAGAGTGCGCGAG	ref_3829_reverse	11	11	10	21	7	8	17	10	8	4
CTATGGTTTGTGATTC	ref_3829_reverse	89	74	90	68	107	73	99	77	109	58
TCTGACTTAAGTTGTC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTTCCTGCCAGC	ref_3829_reverse	6	12	10	6	9	13	12	8	11	4
GGTTTGGAAGGAACTG	ref_3829_reverse	5	3	3	4	2	1	3	3	4	2
CCGTTCGATTACGCTT	ref_3829_reverse	4	0	4	2	4	2	10	7	2	6
CAGACACTCTATGAAC	ref_3829_reverse	9	17	12	16	15	8	19	7	25	16
GTGAGCACTCAGCATT	ref_3829_reverse	52	22	64	42	28	26	17	49	24	38
TCGCATGGAACGTTAT	ref_3829_reverse	15	8	8	3	5	10	10	5	12	4
TCGGTCAAGTTGGTGG	ref_3829_reverse	12	13	10	19	9	11	13	8	10	13
CCGCGCTGCGATGGCT	ref_3829_reverse	21	19	22	14	23	17	15	10	16	18
TATGGCTGCAATTGTT	ref_3829_reverse	15	19	14	11	12	14	18	6	21	19
TCCGCACAGCAGCAGT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTTACTGTCGAAAAAT	ref_3829_reverse	37	57	68	46	60	42	90	43	85	44
CCGCCTTATGCGGGGT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTCCCTAACAAGT	ref_3829_reverse	36	40	30	30	34	22	38	41	44	24
ATTATAACCCAGTCTG	ref_3829_reverse	7	10	3	12	10	12	15	6	12	9
TCTCGCTTTTCGTTTA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGTTGCTCGTCTT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GAAATTTACCCTACGG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AGGAGTGCTCCCCCTG	ref_3829_reverse	4	10	2	9	4	8	16	8	14	4
CCAGTCCGTCCTGGGC	alt_3829_reverse	17	18	11	10	15	10	15	13	23	14
GGCTTGTGATTTCATC	ref_3829_reverse	52	58	82	56	61	53	60	43	63	47
CCGTTGCTTCCGGGCC	ref_3829_reverse	57	109	111	91	105	73	97	70	118	72
GGTTGCACCCCTGCAT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CCGAACACATATGCTT	ref_3829_reverse	13	19	23	14	26	12	26	14	34	15
GCACTCTTGCGCATGG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTCCGTAGTCAGG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTAAGCTAACACT	ref_3829_reverse	2	6	9	10	3	6	3	6	3	4
CTTTCTAGCTCAAACC	ref_3829_reverse	7	3	6	5	10	6	11	3	6	4
TGGCTGTTGCGTTCGG	ref_3829_reverse	21	24	36	22	33	18	33	27	21	12
TGATACAGTACCGGGA	ref_3829_reverse	3	10	4	8	13	7	10	4	10	7
TGGCCACTACAACCTT	ref_3829_reverse	18	29	13	18	18	13	11	12	25	14
CTTATACGCCCTCTTT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GCCCAAAGCATCTCGA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCTGCATTACCCC	ref_3829_reverse	11	18	14	16	25	18	11	18	21	10
GATATTCTTGGTCGCT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TATACGTTTTGCGTTC	ref_3829_reverse	11	10	15	11	11	17	18	8	13	10
AGTCTGGCGTTCTTCA	ref_3829_reverse	26	54	44	37	57	28	45	22	44	28
CTTGTCCCTAATCCCA	ref_3829_reverse	24	38	20	19	26	19	26	18	34	15
CCGACGAGCGCACAGT	ref_3829_reverse	13	13	21	14	17	6	18	22	16	12
GGATACGTTTATACAT	ref_3829_reverse	44	54	46	42	36	38	57	28	47	35
AGTCCTTACACTTCGA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTTGCCGCGCTTT	ref_3829_reverse	7	5	7	7	11	4	7	11	10	7
TGTCAACGTTTCGTGA	ref_3829_reverse	4	11	8	6	10	9	8	12	14	9
GCCCTAAGCTTTTAGT	ref_3829_reverse	19	22	32	29	27	23	30	20	27	21
TATTCGATCGTCTTGA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCCTAAAAATACTGCA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTCCGAGTTTAGG	ref_3829_reverse	18	13	32	26	20	19	29	26	16	17
GATTCCGATATCCATC	ref_3829_reverse	52	52	53	56	77	41	84	48	66	51
TTTTGTCGAACCTGAA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CGGCAAGGCTGCTTAA	ref_3829_reverse	22	22	17	14	18	18	17	14	25	18
GCTCAACACTCGTGGC	ref_3829_reverse	2	8	7	6	5	2	11	3	10	7
TGCTGGCATCAACGAG	ref_3829_reverse	2	4	4	4	2	3	5	1	4	1
TGGGCTTTTGACGGCT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCTCAGGACCCGAGCT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AACCTTGTGCTAGGGC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CAACCATTACCTTTCG	ref_3829_reverse	26	47	32	27	46	21	59	19	44	17
CTTACTATCCTGTCCA	ref_3829_reverse	21	23	21	22	35	16	39	21	29	26
AGGGCTGGCAGGGCGC	ref_3829_reverse	0	0	1	1	1	0	0	3	0	1
AGGGTCTAGTGAACAG	ref_3829_reverse	5	10	12	8	11	8	15	7	8	10
ATTCCTAGTGAAATCT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTTATAGTCTACTTGA	ref_3829_reverse	1	0	1	3	1	3	2	5	4	1
CTTACCTATTTTTGAT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
ACACGGTCAAATTCCG	ref_3829_reverse	3	5	4	2	6	2	4	2	4	2
TTAATGAATCGCGGTA	ref_3829_reverse	14	18	11	13	17	19	19	13	24	11
GAGTTGTCGATTCGAG	ref_3829_reverse	41	52	59	45	61	45	59	41	69	37
ATTTTGTGCTCTTGCC	ref_3829_reverse	1	2	2	0	6	2	0	5	5	2
ATGACTGTCAGCAATC	ref_3829_reverse	10	15	12	15	16	7	11	18	24	13
CACCAGCATGATAGTA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTAATTTATTCGATAC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GCGAGAAGACACATCA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGTTGGGCCAGTC	ref_3829_reverse	20	38	34	31	28	21	37	21	40	14
CTCCGTCGATCAAAGG	ref_3829_reverse	31	43	38	20	59	28	72	22	46	23
CCGGCACATCCCCCCG	ref_3829_reverse	14	38	11	16	36	12	43	15	50	12
CATTTGCGCGGACGAT	ref_3829_reverse	11	17	21	16	20	18	15	8	20	14
GTTTCCGGCTTTGCAG	ref_3829_reverse	12	14	10	13	8	5	16	11	20	8
TAGCTAACGTAGTTCG	ref_3829_reverse	3	5	1	6	3	7	6	1	7	4
GTGTTTCATAATCGAT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGACCGTCTACC	ref_3829_reverse	27	35	33	37	48	32	45	35	49	31
ACTCGCCAGAAAGCCA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CAATCCAGTTATTTTT	ref_3829_reverse	43	47	59	44	46	49	66	43	63	35
TGACGCACCGTCATCC	ref_3829_reverse	10	10	15	13	11	11	25	8	22	14
GCTGCAGGAACTGCAC	ref_3829_reverse	18	14	16	19	29	18	33	18	29	14
TACGGTTGCGTCGTCG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGGGTACCTCCTT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
ATGCAATCGCGGCACG	ref_3829_reverse	9	9	6	8	7	9	10	11	18	9
TTCCAATCTTCTTCCG	ref_3829_reverse	5	2	7	3	5	4	9	4	7	5
GTTGCCAGGGTCTTAA	ref_3829_reverse	14	15	26	15	13	15	19	12	22	10
TGTTGGATCTGATAAA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTGCTACGAAATT	ref_3829_reverse	14	36	41	22	37	20	37	23	44	33
TTTAACCGGGACAGGA	ref_3829_reverse	13	17	19	6	17	13	15	14	18	16
CGTCTCCTTAGAGGGA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
ACTAAAATTGTTGGAG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGGGGTAAATTAC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TATTAGCAACAATTCC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTTCTGTGTTGT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCTTCGGGGTTCT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GCCCATCATCTACGAC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCACCCCGTTCGT	ref_3829_reverse	7	9	9	6	16	10	14	8	14	3
GACAGGATGGATCGTC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTCGAGTGACAGGCGT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTAGGTATTCTTT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTAGTCAACTAGA	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
TATCCTTTGTGAATCT	ref_3829_reverse	47	53	48	48	51	45	62	31	52	63
TAAGACACTTGCGCCT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTATAGGCTCTCATTT	ref_3829_reverse	15	30	22	17	34	25	32	22	32	26
TATTATCAGAGGCTTT	ref_3829_reverse	8	5	8	5	5	9	5	6	9	3
AAAAAAGCACGAGCTT	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTAGATCAACTTAAGA	ref_3829_reverse	11	22	14	10	17	14	13	8	18	9
GCGGCGTCGGAGGCTC	ref_3829_reverse	23	24	22	23	10	16	30	11	19	22
ACCCCTCCGGGTTCGG	ref_3829_reverse	2	1	6	5	1	3	2	5	6	5
TTTGCGACCCGGTTTG	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
GACAAACTTAGAATGT	ref_3829_reverse	20	21	24	15	28	11	26	19	29	11
GAGCGTTGGGTATTCT	ref_3829_reverse	19	31	27	16	32	19	12	16	28	21
ATACGCTTCGCTGTTA	ref_3829_reverse	16	8	10	9	18	7	7	5	16	10
CGTCTAGCTTTGCTCT	ref_3829_reverse	21	16	21	13	21	11	30	19	33	13
TGCTGCTTGTGCAAAC	ref_3829_reverse	0	0	0	0	0	0	0	0	0	0
AAACCCCATCGTTTTC	ref_3829_reverse	6	12	13	8	6	3	19	5	10	1
CCCTGACTCAGAATCG	ref_591_negative	3	8	5	5	15	5	16	7	14	9
ATGAGGAGCTCGCACG	alt_591_negative	20	11	14	13	11	12	17	10	15	10
GATACCACATCGTTTA	ref_591_negative	37	36	57	44	53	42	57	40	57	34
TTGGTATACAACAAGT	ref_591_negative	43	57	69	40	60	45	61	49	51	54
GTACATGACAGTCATT	ref_591_negative	26	25	31	29	39	30	35	32	36	33
CCTTGGTCCAGGAGTC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TTTAAACTCCCGGTTA	ref_591_negative	8	19	9	10	18	10	27	9	22	11
AAGGACTGATTATTTC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TATTATCAGATTGTAG	alt_591_negative	31	28	30	30	28	29	23	24	29	22
TCTAGTGATGCTTTTC	ref_591_negative	1	1	2	1	1	0	3	0	5	1
TCGGCTCTCTGAGCTG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
AACTCATCTTGCGACA	ref_591_negative	29	16	36	19	31	21	23	24	22	25
TTGACGGGTCTTAGTC	ref_591_negative	12	31	42	31	24	20	30	13	37	36
CCTAACCGCGTTACTC	ref_591_negative	7	7	11	6	2	4	4	4	6	2
TCACATGGTCACAGCC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GTCGTGATCGCAGTCG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TAGCCCTTGAGCATCG	alt_591_negative	414	340	424	395	302	372	330	371	369	308
ACCTCCTTGTCGTAAC	ref_591_negative	23	25	17	17	22	18	26	21	26	12
CCTCACTTGGTCAGGC	ref_591_negative	15	28	45	18	26	17	39	33	45	24
TTTTAAGTTGTGCTGG	ref_591_negative	0	3	1	0	0	1	1	0	0	1
CTACTGGTTTACGCTG	ref_591_negative	31	22	29	30	24	24	40	29	30	24
ATAAGCGTGCGACTCA	ref_591_negative	13	10	17	12	8	7	15	14	15	11
CCTCATTCTCGGTGTT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GAAAGGCTATGTCGCA	ref_591_negative	0	0	4	0	1	3	1	0	0	1
TCTATTTAATCCTCTC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GCCATGTTAGTTTTGC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TCGAGGTTTGATACAT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GAAATATTCACTGGTA	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CTTTGGAATTCGTTAT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TTTTCCGTAGGTGGCC	ref_591_negative	4	1	10	10	5	8	4	13	4	12
CATTCGTTAGGGCGCC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TTAGCTGCCTTTTAGA	ref_591_negative	0	0	0	0	0	0	0	0	0	0
ACTGAACGACCATAAA	ref_591_negative	0	0	0	0	0	0	0	0	0	0
AATTTAGCTTTGCATA	ref_591_negative	18	17	16	11	20	14	17	12	14	20
ATAGTCGCAGGACTAA	ref_591_negative	9	10	8	9	4	8	9	7	10	9
GCCCGTCTCGGCTAGT	ref_591_negative	10	4	9	10	8	7	12	6	11	9
CTTTTGTCTTAGGTTT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GTGGTGGCCGTAATGC	ref_591_negative	11	14	15	8	13	11	18	10	16	15
TTTAAATTTTGTTGCG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
ACATATGTACTCTTTT	ref_591_negative	2	9	3	3	8	5	12	4	3	2
GACTGGTAACTTCATG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CGCTCGTGACAGATGC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TGTTTGCGAGATTCGA	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TAGTAGTCTTTCCTCT	ref_591_negative	60	64	71	67	57	66	63	68	80	63
TTTGCTGAGATCTATT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TGAGGCAAGATTACTT	ref_591_negative	34	40	31	27	43	29	43	25	36	21
TATCTAGCCTATTTGA	ref_591_negative	98	160	149	97	151	106	145	106	151	86
TTATATAGTGACTCGG	ref_591_negative	22	13	28	19	10	16	13	10	28	16
CTTCTGGAGTCAGCGC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GCGTTGGTACCTACTC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CTTCCTGACGTGCAAG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CTACCTCCGGTATGAC	ref_591_negative	19	23	16	14	11	14	19	7	15	9
ACGCGCTGGTTTTGTG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CTTGCCAGCGCGGGCA	ref_591_negative	11	5	8	7	8	9	6	10	9	3
ATCAGTGTATCTCCGG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GGTTAGTCGCCTAACT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
ATATTTGTTTGATGAT	ref_591_negative	7	3	7	7	6	3	13	9	3	7
TATATTGTTTCCACTG	ref_591_negative	1	1	3	1	2	0	2	3	3	1
TTCATGACTCCTAGGG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
ACGACGTAATACCTTG	ref_591_negative	20	21	21	18	29	32	20	27	28	22
CCCGGACCTCCTAACT	ref_591_negative	7	46	24	6	49	6	43	5	33	9
GGACCTCCCGCCCAGC	ref_591_negative	5	5	6	14	11	14	9	7	8	6
CTGAATACGTTCTCGC	ref_591_negative	21	20	23	25	36	16	35	9	26	21
AATACTGGCTTGTGTG	ref_591_negative	12	10	21	18	13	16	19	12	11	11
CCTTTATTAAATTGCA	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CTAGATAGTCCTCAAG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TTCCGGCAGTGAATAG	ref_591_negative	61	57	73	70	67	43	75	62	77	45
TCGTCACCGGAAGGTA	alt_591_negative	31	76	44	46	98	20	91	26	90	33
GCGCCATGTTCTAGAT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CTATGCTGCATGACCT	ref_591_negative	5	9	18	13	12	14	6	15	5	20
CGCCTCGGTTAATGGT	ref_591_negative	107	110	126	88	117	85	113	100	103	78
ACACTGTAGCTGGTTA	ref_591_negative	28	43	44	39	28	28	50	32	55	21
ATTTCCCTCCAGCTTT	ref_591_negative	8	4	5	1	2	1	5	5	4	5
GTTGTTTGTCCGTCCG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
ACTCGGCATCGTGTCC	ref_591_negative	18	15	11	17	22	18	10	11	17	13
TTCTCCCCATCCGCGA	ref_591_negative	40	69	50	35	89	29	93	28	93	27
CACATATAATTTGATG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
GCCTTCTTAATGTTTA	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CGCACCTATAAGGAAA	ref_591_negative	0	0	0	0	0	0	0	0	0	0
AGGTCCGTTCTGATTT	ref_3516_upstream	92	38	78	88	30	80	31	89	20	97
TTACCTTTTAGGACAG	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CTGCACTTTCTATGCC	ref_591_negative	0	0	0	0	0	0	0	0	0	0
CGTGATGTGCTTCTTA	ref_591_negative	0	0	0	0	0	1	0	0	0	0
ATGAGCTAGTTGGCAC	ref_591_negative	46	54	68	53	56	50	69	60	74	43
TTACGATGTCTGTCAG	ref_591_negative	45	31	29	45	35	33	35	38	63	30
TTTGGCCGAATGCGTT	ref_591_negative	0	0	0	0	0	0	0	0	0	0
TTAGTGTATGGTATAC	ref_591_negative	30	55	43	38	48	42	47	44	45	45
CATCTGGCTGGCTATG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
AAGGGTTGTGATAAGA	ref_3022_RC	46	55	67	40	54	46	47	45	62	39
GTCCGATTCCAGGGTC	ref_3022_RC	21	35	38	22	23	22	32	18	24	21
TTTTACCCTTTTTATT	ref_3022_RC	41	36	47	43	24	38	29	45	34	41
TACTTTCACGTTTCGT	ref_3022_RC	49	79	75	50	73	54	69	39	72	47
TAACAGGACTATTATC	ref_3022_RC	93	126	109	93	96	103	108	70	118	75
TTATCAGCCTTGTCAC	ref_3022_RC	29	22	23	23	24	34	16	20	34	30
TGGTAATTACGCGGCC	ref_3022_RC	18	14	15	12	8	19	18	23	17	6
CACCTGCCGGGCCCTC	ref_3022_RC	7	3	2	2	6	4	3	3	6	3
GCCGGTCCATGTTATA	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
CACGCTCGGATTTAAT	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TTTTAGTGGTCGGGGT	ref_3022_RC	56	49	58	52	50	79	69	49	71	59
GGAATTAATCTGTATG	ref_3022_RC	59	41	50	40	52	37	46	33	53	46
GATCTGGTTCTCGTAA	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
GGAATCTCCTGCCCTT	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TATTATGAATTTTACC	ref_3022_RC	8	13	14	13	25	16	27	20	22	9
CGGCCTTTTATGGCTG	alt_3022_RC	192	175	244	172	176	205	189	183	215	155
TGATGTCCGAGGGCTT	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
AACATCACTTCAGGGC	ref_3022_RC	26	22	36	34	28	18	35	28	26	34
ATTCTGCATGTTCTTC	ref_3022_RC	13	15	15	9	10	9	11	13	11	13
AGGTTGTAGGTACATT	ref_3022_RC	80	75	100	71	73	67	86	59	84	70
TTCACCGACCATGGTT	ref_3022_RC	14	67	34	27	69	24	56	25	56	21
TCGTTTAGTTAACCTG	ref_3022_RC	85	109	141	111	122	116	109	94	111	96
TAAGTTCGACGTGGAC	ref_3022_RC	17	27	33	18	38	18	33	14	28	22
TTACTACGGCGGAGGT	ref_3022_RC	136	142	170	125	142	133	145	126	121	133
TGTGACCCACTCTCGA	ref_3022_RC	12	11	21	18	11	17	17	11	8	10
GTCGGTACTGTCAGGA	ref_3022_RC	441	487	553	482	540	456	537	418	504	403
AGTTTTAAGTCCGACA	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TGGGGTAGTTGATGCT	ref_3022_RC	22	23	39	29	23	26	32	18	43	16
TTCTATAGTTTTTGCG	ref_3022_RC	6	7	10	8	12	16	13	11	10	4
AGACTTTAGCGTGGTC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TGGCAATTCGTGTCTG	ref_3022_RC	9	18	21	12	18	14	14	15	22	7
GTACTCACACCTGCGG	ref_3022_RC	21	28	33	25	27	32	37	22	29	24
AGCATGCGCTGCATAT	alt_3022_RC	7	10	7	6	3	9	13	4	3	6
TTGTAGCCCCGTATGT	ref_3022_RC	8	9	16	11	9	9	6	11	15	6
ACGAGTTAGTGTAGAG	ref_3022_RC	39	37	34	41	45	23	50	33	61	44
CGTTTTTTGTCTTCGG	ref_3022_RC	19	14	30	37	19	26	20	23	24	18
TCCTCACGGCCAATTC	ref_3022_RC	10	22	14	15	22	13	14	11	26	20
TCCGCTCCGTTCTATT	ref_3022_RC	22	25	34	22	41	22	37	19	21	21
CAACTCCATCGAGACT	ref_3022_RC	28	17	30	30	28	22	26	27	25	34
CCCGTTCCGGGTTCAA	ref_3022_RC	28	38	26	26	32	10	27	18	18	20
CGCCCCATGTAGTTGC	ref_3022_RC	14	53	18	17	59	19	55	30	59	18
GTCTAACGCTACGTAA	ref_3022_RC	18	17	28	21	20	18	18	23	20	25
GTGCTTGTCCTGGGTT	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
ACCAGCTCGCTCGGAC	ref_3022_RC	3	14	0	4	8	5	8	4	5	1
TTTAGTTACGGACTGT	ref_3022_RC	35	48	43	40	42	37	44	46	61	30
CTGTCTGCCCCGATTA	ref_3022_RC	32	29	29	13	34	25	27	25	22	19
TCGGATATATGACAGG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
GTCACATTTCCGCGCC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
ATAAATTTTAATCTAG	ref_3022_RC	97	100	110	100	88	96	81	95	87	89
ATTTATTATTTTTGTT	ref_3022_RC	145	141	205	150	167	141	156	159	183	151
ACCGCTGCCAGAATGC	ref_3022_RC	12	26	24	15	32	13	29	24	20	22
GGAAATTTGTCGTGAT	ref_3022_RC	82	60	70	79	63	66	64	76	67	73
AACGCTGTAAAGTCTG	ref_3022_RC	59	62	53	60	57	59	56	56	76	43
AGGGCGATTAACCACG	ref_3022_RC	19	27	26	27	40	36	34	31	39	25
CGCATTGCATACGATT	ref_3022_RC	43	37	50	30	61	32	55	30	59	39
CTCGCTCTTGGGCAAG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
ATGATTCGGCTATCCA	ref_3022_RC	9	14	10	11	15	15	13	10	6	10
ACTGCGCCGGGGCAGA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CCTCACTAGATTCTGT	alt_3022_RC	3	9	3	4	7	3	3	4	3	8
TGCGTGGGCATCTATC	ref_3022_RC	37	19	24	31	29	19	30	19	20	19
CTGCTAGCTGCTCTGT	alt_3022_RC	34	45	45	37	43	34	42	33	34	33
TTGTTTTGTTGTACCG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
AACTTATTACCTTCTC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
CTGTAAATCAGTTTTG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
GGTTCATTAATATGAA	ref_3022_RC	23	14	23	11	18	18	22	13	18	17
CTGCCGATCCGTTGAA	ref_3022_RC	64	115	62	76	116	52	112	70	101	51
GTCATCACCGTGTAGT	ref_3022_RC	35	47	66	57	64	53	56	51	46	31
TCGTGTTAGAGGTAGG	alt_3022_RC	41	43	46	27	50	35	53	32	42	36
GGTTGCGTGATGTTAT	ref_3022_RC	62	61	73	64	59	50	63	46	63	37
TATAGTTGTTCATGGG	ref_3022_RC	76	89	84	58	94	70	91	47	57	53
ATGAGGGTCAAACAGA	ref_3022_RC	4	6	8	7	3	7	2	6	10	6
GCTCTCAACACTGATT	ref_3022_RC	11	18	23	25	19	15	15	21	16	21
CACCTGCGGTATATAC	ref_3022_RC	20	19	23	13	17	9	26	20	24	9
TAGTTCAATCACGCGA	ref_3022_RC	8	3	8	3	6	8	9	7	3	8
GGGAAAGGTTACGGGT	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
CTGTGCCCCACCAATT	ref_3022_RC	54	56	60	63	64	45	56	52	65	43
CCGCTTACGGCGCCAG	ref_3022_RC	5	3	7	3	6	3	6	9	7	9
TATAAACGAATTTGAT	ref_3022_RC	37	29	46	52	28	42	41	48	39	34
TCACTTTCGCTACTGC	ref_3022_RC	65	49	48	44	67	41	59	55	51	45
CCGTGGTAGCTTATAT	ref_3022_RC	10	6	3	2	9	7	7	4	11	5
GGATAAGACATAACCC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
GAACCCTTTTTCCTGG	ref_3022_RC	19	23	49	30	37	32	32	25	34	22
CACATCGTGTGTCTTC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
CCCTGCGTGACGGTAC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TTATGTTTGATGTAGT	ref_3022_RC	40	31	46	32	34	38	31	40	22	26
TATTCGGACGACTTAA	ref_3022_RC	79	79	112	86	114	81	96	110	96	88
GTACGCCTGGCCCGCT	ref_3022_RC	110	87	109	95	98	97	87	80	97	83
GCGCGCTAAAACAATC	ref_3022_RC	13	11	19	16	20	10	11	14	11	17
CCGACACACCGGTGAT	ref_3022_RC	37	72	41	34	67	29	76	31	77	34
GAGTTGTATCGCCTAT	ref_3022_RC	6	14	14	13	11	13	17	14	20	11
CCCTAGATTGAGCTTC	ref_3022_RC	13	6	11	14	15	8	12	9	15	5
AATGGTGGCCAAGAAC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TGAGTGCATTCTGAGT	ref_3022_RC	16	24	21	15	19	14	19	18	13	14
GTTAAGTGGTACCGCA	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TTCTGTATGGAATAGC	alt_3022_RC	59	88	81	52	80	58	90	51	95	44
TCCAGTGTGACCTCGT	ref_3022_RC	11	28	15	14	15	12	14	10	20	7
GCTATTTAAGCTACCC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TAGACTGGGACAAGCC	ref_3022_RC	3	2	5	4	4	3	10	1	1	5
TTGGCGGCACGTATGT	ref_3022_RC	11	19	17	16	12	9	11	7	18	8
GGGCAAATACCCCCCC	ref_3022_RC	27	21	25	39	11	22	20	20	20	21
GAGTACATCAGTTAGT	ref_3022_RC	42	49	33	30	45	37	35	37	37	28
CTACGTCTAGAACAGT	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
GCCTCGCCATTTTGCC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TGCTTAGTGTCAATAA	ref_3022_RC	7	13	8	4	14	8	8	7	3	10
ATTGCTACCAATTATG	ref_3022_RC	10	20	14	21	19	10	16	17	21	15
GCATGTTAGTCTCCGG	ref_3022_RC	23	15	14	17	13	11	8	13	17	14
GCCCATTCGTGTCCGT	ref_3022_RC	13	28	19	17	28	13	35	20	23	24
CTCGTGTAGTGTGATG	ref_3022_RC	19	15	18	20	11	17	20	22	21	22
GGCAACGTTTAACGAC	alt_3022_RC	24	30	35	20	20	33	36	27	26	25
TAGAATGCTCCTCTTG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
GTGGCATTCACGTGTT	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TTTTACGGCTATATGC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
AGTAATCAGCTAAGCC	ref_3022_RC	33	43	46	40	31	32	40	29	47	36
CTCTTCACGCAGCTCG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
GTATTCCTAGGCATAT	ref_3022_RC	27	39	42	27	44	38	36	26	48	31
TTCATGTGGGACGCCG	ref_3022_RC	133	117	183	129	131	112	132	138	132	126
AAGTCTGGGCTCAGTT	ref_3022_RC	5	1	3	1	9	4	8	4	7	6
CGATCTGGATCATCAG	ref_3022_RC	37	35	44	46	35	40	45	34	46	36
AGAGGTCATGCAATAA	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
CGATACGGCTTTTCTC	ref_3022_RC	16	14	15	17	13	14	36	14	22	14
GATTGAGTTTCCTGTT	ref_3022_RC	1	8	1	7	6	2	7	4	7	3
TTTGTATTATATATAT	ref_3022_RC	8	10	9	16	10	9	12	5	9	6
ATTTTCCGCTGCAGGA	alt_3022_RC	77	89	111	88	95	86	94	95	96	85
CTGAGGTGTCCGCGAC	ref_3022_RC	8	9	11	7	13	0	13	5	8	5
CACTACGTTACAAAGC	ref_3022_RC	12	18	14	10	8	9	18	8	15	9
TACATCTCGAGGTCGT	ref_3022_RC	28	28	33	32	33	37	36	25	32	33
GGATCCGGATAGGGCG	ref_3022_RC	27	13	34	28	36	21	27	18	15	16
TTTACCTGCTAGGGCC	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
CAAATGTCCAAATTTT	ref_3022_RC	23	38	36	30	40	25	29	26	34	22
AACTCTCCAGGTCCTA	ref_3022_RC	17	17	24	17	16	21	12	16	19	15
CGGTGATCTTCTTTGG	ref_3022_RC	41	42	55	37	26	39	26	37	25	30
TTTGTGGCCATTGAAA	ref_3022_RC	17	9	19	15	11	15	26	11	18	12
ATCGGTTTGCCAGCCA	alt_3022_RC	11	17	14	22	12	12	9	16	20	7
GGCTGTACGTGATTTA	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TTTTGCCAATACTAGT	ref_3022_RC	4	13	14	9	6	9	15	9	10	4
GTGGAGTGAACCTGTC	ref_3022_RC	33	53	36	34	35	39	46	36	51	36
ATACTGCTTACGCTTC	ref_3022_RC	3	2	6	3	3	1	4	2	5	3
GATTCTAGCTGTTCTA	ref_3022_RC	43	35	54	50	48	43	42	47	61	42
AGTTCCATCTACCTTT	ref_3022_RC	31	21	40	31	23	23	48	33	33	24
TTTGCACCAACTATCG	ref_3022_RC	45	49	78	35	70	63	62	56	54	54
GTCGTTTGAGCTTCTC	ref_3022_RC	81	87	122	103	104	76	91	90	114	76
CGGAATTTTAAATTTT	ref_3022_RC	19	17	23	23	16	13	14	16	16	12
TCAACGGACGACCGTG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
TGTACATGTATCTCTA	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTCGGATTTAAT	alt_3022_RC	87	88	79	57	81	73	90	67	99	53
TCTGATGCTGGTACAC	ref_3022_RC	2	4	7	5	4	8	5	2	6	1
TCTGGTCGGATTATAT	alt_3022_RC	1	6	8	4	4	1	6	9	7	5
AGGATCACTATAGACC	ref_3022_RC	8	18	14	10	10	10	8	8	11	7
AACTCAGGATAATTTG	ref_3022_RC	3	5	5	3	10	5	9	7	8	12
GTGACCATAAGCAAAG	ref_3022_RC	37	53	54	57	33	37	58	48	46	34
GGTAATACACGTTTAG	ref_3022_RC	59	54	54	53	47	53	64	53	63	69
TGGCACGCGCTGTTGC	ref_3022_RC	20	23	17	24	19	16	18	10	27	15
TTCCTTACGCCACGCA	ref_3022_RC	65	70	69	71	52	70	76	51	74	55
TCCTAGTCCGCTCGTG	ref_3022_RC	22	19	29	26	31	23	20	22	33	28
GCTACAGAGAGACTTT	ref_3022_RC	64	73	75	78	75	60	91	55	86	51
TCCGCGTAACGCAGCT	ref_3022_RC	78	95	83	80	99	58	96	74	88	66
TCTGATCTTAGCGGGG	ref_3022_RC	6	6	13	8	5	9	8	3	7	12
AGAGGGTGGCCTGGTT	ref_3022_RC	27	26	37	41	26	23	27	31	33	28
GTAGGGCCGAGCATAT	ref_3022_RC	75	85	84	78	62	65	61	74	77	57
GCTATATTGCTTTCGT	alt_3022_RC	143	132	175	156	149	135	154	124	163	139
CGCATGTCTTGGGGTT	ref_3022_RC	40	34	48	36	32	30	39	41	40	38
TAGCAATATGTACTAC	ref_3022_RC	40	40	48	30	54	24	67	25	51	37
GTCGGTGGTACCGTAG	ref_3022_RC	0	0	0	0	0	0	0	0	0	0
AGACATATGTGGTGTG	ref_3022_RC	23	17	16	12	18	24	16	17	16	16
ACTATTCTATTCTAAA	ref_3022_RC	20	14	22	17	13	10	13	6	16	7
AAAGGTGTTTTATCAA	ref_3022_RC	142	140	181	143	169	123	181	130	151	111
TGTTCGGACGCATTAA	ref_3022_RC	1	2	4	5	2	6	2	2	3	3
GATCGGTACATGAATT	ref_3022_RC	3	7	2	1	1	3	4	5	1	6
CTTTCAGTGATGGTGT	ref_4553_reverse	17	35	26	10	30	16	43	22	29	18
CGAACACGCTATTTTG	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCTGTTTTGGCAC	ref_4553_reverse	26	22	22	17	29	13	34	14	32	21
CATATGTCACGGTGCA	ref_4553_reverse	95	134	113	98	150	73	148	81	132	70
ACCTTAGCGGGAGAGT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTACGTTTTATCCGCA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGAACTTAGGAG	ref_4553_reverse	10	18	16	16	19	9	22	10	17	5
GTGTATGTACAGAGTC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCTTGGTCGACTT	alt_4553_reverse	18	72	13	19	62	15	67	22	70	10
TAATGAGGCCCACACT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCTTGGGTGCGAC	ref_4553_reverse	1	0	1	0	0	0	1	3	0	0
CTTCTCGCCGCATTGA	ref_4553_reverse	10	12	12	3	9	5	28	7	9	7
CCTGCATTAACTTGCA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TGCCATACCGATCGGG	ref_4553_reverse	9	16	7	0	11	5	15	0	6	2
CTGGTTGGTTTTTATT	ref_4553_reverse	42	73	51	43	66	54	93	41	96	53
ACACTTCTCCGTAAGT	ref_4553_reverse	29	63	22	30	68	24	70	16	66	17
AGCTACCATCCTTCGT	ref_4553_reverse	10	20	20	5	21	10	18	8	15	11
GGTAACAGGAAGTACA	ref_4553_reverse	6	5	9	8	12	4	13	4	8	0
GATCAAGCTTTACTAC	ref_4553_reverse	1	1	3	2	1	0	1	1	0	0
ACGCACTTTCTCGGAG	alt_4553_reverse	33	58	29	31	55	32	53	37	44	27
GTATTTGTTCATCCCT	ref_4553_reverse	14	15	16	12	16	9	15	13	19	11
ATAGCCGTTTGAATCG	ref_4553_reverse	6	4	9	0	19	6	8	4	14	4
CTTTCCTATGTGGCGC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTTGTTCATCGGT	ref_4553_reverse	22	53	33	19	50	27	50	24	62	18
GCTCTCTCTCTGAAGC	ref_4553_reverse	26	45	26	16	56	21	54	14	51	25
AAACGTTATTCAACGT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATACCGGGCGTTCCGG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GACTCTGTAAACCTCC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGAAAATTTGAAC	ref_4553_reverse	19	43	22	21	30	25	51	24	55	22
GGTGTTCCTTGGCTGT	ref_4553_reverse	53	91	64	52	83	51	100	57	93	49
ACTTCGCTCGTGATTC	ref_4553_reverse	17	42	19	16	47	18	28	16	28	12
ATCTCAGTACAGGCCA	ref_4553_reverse	6	8	15	10	8	4	5	4	10	4
GAGCCAACTGAACACC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGTGTTAAGTCTG	ref_4553_reverse	4	8	5	5	6	5	3	2	4	3
ACCGCTACGAAACTCC	ref_4553_reverse	15	44	22	12	47	19	46	19	26	15
CTTTCTTATGCCGCCA	ref_4553_reverse	5	5	5	3	5	4	2	2	6	3
TGCCACTAAGCAGGTT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCCCGAGTTTGTT	ref_4553_reverse	6	10	4	9	8	1	5	3	10	0
TGTATTGCATGCCTTC	ref_4553_reverse	6	14	3	5	7	9	7	3	14	3
TGTCATATGTTTCCGA	ref_4553_reverse	11	22	16	11	17	18	34	17	33	16
TCCGAGGGCTATCGAG	ref_4553_reverse	23	44	24	24	36	22	38	13	31	20
TGCGTGGCCCGGATCT	ref_4553_reverse	14	35	17	19	28	13	42	13	29	22
CATGCGAGTAAGGAGT	ref_4553_reverse	4	9	6	4	13	4	18	6	12	7
TTGTCGACAACCTCTC	ref_4553_reverse	8	13	10	8	23	10	12	7	14	9
AGCATGGCTGGCGGGT	ref_4553_reverse	8	15	17	8	10	2	18	8	13	5
CAGGCAATGGATGGCT	ref_4553_reverse	0	2	2	5	5	1	5	3	1	0
TTCTTCTTTCGGGGAT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGGTCACCGATGC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GGAATTGCTTTCATCA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GACATCCGCTCCGCTT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TAAGGCATGTTCTAGA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CAACTCTTTCGGCCGT	ref_4553_reverse	12	32	19	21	31	13	32	15	53	20
TCACGCAGTTGATATT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTGCTATTGTCCC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GATCGGATTTCACTTC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGTTAAGCCCCAG	ref_4553_reverse	24	24	26	15	25	19	25	12	27	11
CCCCACATCTACTTCG	ref_4553_reverse	13	43	9	8	31	11	26	8	32	10
GAGCAGCTCAGATTTA	ref_4553_reverse	91	168	117	96	165	83	200	89	170	70
TGGCTCGCTGCTTTCA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGCTCCACATCCA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCTCCTGAATGAA	ref_4553_reverse	82	152	89	71	127	69	117	79	151	59
GTCACGATAACAGGAT	ref_4553_reverse	8	15	10	3	14	14	12	4	19	8
GTTCAATATAACGTAT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGGTTAGCCCGG	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
AACTATATATTTCTCA	alt_4553_reverse	41	78	60	48	82	50	80	42	80	44
AAGGAATTACTGATGT	ref_4553_reverse	27	42	42	26	48	43	36	20	49	18
TCATAGGGTTTCCCGT	ref_4553_reverse	15	28	21	11	30	20	25	11	27	19
GTAAGCCACAATCCGC	ref_4553_reverse	21	54	25	17	67	17	74	27	62	15
CTCAGGTGGACGAGTG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GCATAAACGGCGTAAC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGCCCACTGGTGA	ref_4553_reverse	20	36	14	9	28	13	22	8	37	8
CGCGTAATTATTCGCC	ref_4553_reverse	6	23	18	14	20	8	16	5	23	11
AGTAAGTATGCACCGG	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCCTGCTTGTTGTGCA	ref_4553_reverse	18	49	19	18	49	28	36	18	46	19
TAGGATTAACATCTAT	ref_4553_reverse	30	39	45	35	53	39	47	45	47	32
GTGAAGTACTTAGGTT	ref_4553_reverse	5	13	9	5	7	3	7	0	7	8
TCGCCCTGATTCCGTG	ref_4553_reverse	128	237	151	134	201	119	225	127	261	126
GTGCTAGGAATTGTAA	ref_4553_reverse	126	312	166	134	303	144	295	139	269	153
CTTTGGAAGGGTATGA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCATTAGGGTTTG	ref_4553_reverse	5	6	9	7	14	5	16	4	9	13
ATTTTTTGGTTCCCAC	ref_4553_reverse	75	164	103	84	131	71	143	66	165	71
CTCCATGTCTTGCTGG	ref_4553_reverse	11	19	7	10	6	9	11	6	14	8
CAGAGCTGTACTCCTG	ref_4553_reverse	17	24	15	16	25	18	44	18	16	23
CAGAGTCCAGAATGTT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GAGAAAAACGGCATGA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TGAGAATGGAACTCTC	ref_4553_reverse	0	5	2	1	4	2	6	0	5	1
CCGCATGTCTTTGGGA	alt_4553_reverse	22	29	22	16	36	7	41	18	30	13
TCTCTGCATTTTCTGC	ref_4553_reverse	3	6	2	4	3	3	4	8	6	7
AGACTGAACTCCGCTA	ref_4553_reverse	5	18	16	7	12	12	12	10	18	5
ATGATGACTCACGGTT	ref_4553_reverse	33	45	43	42	54	49	51	28	61	26
CCGGATCAGTTTGAAG	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCATTATTTCCTT	ref_4553_reverse	30	23	24	20	49	25	39	14	48	14
ATAAGGGTCTATTATT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGGCCCCGGCATA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCGTGACTGCTGT	ref_4553_reverse	1	9	3	3	10	2	8	3	8	3
AATAAACATGGCACCG	ref_4553_reverse	18	16	20	10	18	14	33	14	18	15
CAATCGGTCAAGAAGC	ref_4553_reverse	2	4	0	2	7	1	5	3	1	1
CTTCTATCCGTGAGCA	ref_4553_reverse	9	6	2	6	12	6	9	0	12	3
CTGCGGTGAATGAATC	ref_4553_reverse	51	53	61	54	81	39	76	44	87	43
CATAGTATGTTACCCT	ref_4553_reverse	21	33	24	20	37	16	36	18	35	17
TCGGTGCTCCGATTGT	ref_4553_reverse	3	7	4	7	7	10	5	1	3	2
AAGAGCCTGCCTTGAC	ref_4553_reverse	4	3	5	3	7	3	3	0	2	2
CGGCACGTCAATTTAA	ref_4553_reverse	5	14	7	8	14	10	18	3	15	13
TGGCAAATTTCGCAGA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
AGAGAATGGAACTCTC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTCCCATGTACAC	ref_4553_reverse	7	26	2	3	26	4	21	7	19	8
GGGCGTTAATCGTAAG	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTGGCCACATGAC	ref_4553_reverse	2	6	1	4	6	4	6	6	11	2
ATTTTACGTTGGTATG	ref_4553_reverse	54	64	65	35	66	65	67	37	98	38
ACGCCTCTTGGGCTTT	ref_4553_reverse	12	29	14	23	31	10	42	19	25	12
GCTAGTGAGTTATATA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGTGTACATACGT	alt_4553_reverse	22	60	40	22	63	33	56	15	57	17
AAGGCATACCCCGACA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGTGTTTAAAACC	ref_4553_reverse	0	1	1	0	1	0	0	1	0	0
AACCTCTACTTCTTCT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTTTTGTGATATA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTTGGAGCTTTCT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
AGCGCAATGACATGGG	ref_4553_reverse	14	25	11	15	20	6	15	9	24	12
ACCATCCTTCTCTTTT	ref_4553_reverse	71	146	103	69	158	59	151	68	169	66
GCATGCGTCCGTTGTA	ref_4553_reverse	5	3	6	3	7	4	9	5	8	0
AAAGTATTCCTCCGAT	ref_4553_reverse	1	3	1	2	3	2	2	0	5	0
GCCGTTGTAACAGCTA	ref_4553_reverse	14	33	20	16	30	5	29	16	21	13
CGTGTTCACTAACTCA	ref_4553_reverse	21	53	30	36	59	24	70	19	65	35
CGCCGGGCTAGTGCTG	ref_4553_reverse	4	6	6	2	10	8	4	2	11	5
TTAGCGTGCAGGATAA	ref_4553_reverse	4	10	3	8	12	9	8	2	5	6
CCTCTTTCTAGGGTAA	ref_4553_reverse	12	16	10	9	16	8	18	13	8	7
TCAAAGCTGCATGCCC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGAATTAGGTAAC	ref_4553_reverse	3	5	4	3	8	10	4	3	4	0
CCATCTATGTTGTACG	ref_4553_reverse	33	66	37	37	58	26	74	34	73	35
CTCCAAAAAGGTAGTT	ref_4553_reverse	15	59	18	22	45	19	52	14	38	13
CGTCCTGGCCTTGAAA	ref_4553_reverse	7	15	3	6	12	5	9	4	8	8
CTCTCGACGGTCAGGT	ref_4553_reverse	9	5	10	9	12	5	11	4	14	3
AGCTCAGATTAACACT	ref_4553_reverse	18	48	24	17	39	24	54	15	55	18
ACCCTCTTGCCTAACT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTATATATCAGTC	ref_4553_reverse	23	61	27	20	60	21	62	23	59	25
ACCGTGTGGACTTCCT	ref_4553_reverse	2	15	7	12	22	8	8	5	11	5
GGTCTTGTTGCTTATC	ref_4553_reverse	17	27	34	23	39	23	22	13	42	25
CCTATCACACTACTTA	ref_4553_reverse	6	26	10	7	14	11	20	8	20	3
TAGCCTCACTGCGTAT	ref_4553_reverse	3	4	4	2	4	4	7	3	12	1
GAACGGGTTAGCCTAC	ref_4553_reverse	19	14	13	10	13	12	22	11	12	6
ATAAAGCAGCTCTTAG	ref_4553_reverse	14	35	13	15	24	16	40	21	36	18
GCATTTGCGCTACCAA	ref_4553_reverse	7	26	5	7	15	10	18	5	15	8
TGTGTTACCAGCGGAT	ref_4553_reverse	25	50	30	25	32	34	33	27	47	23
ATCCGAGTCCTTTTAT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTAAATTATTCAG	ref_4553_reverse	19	43	26	25	40	18	30	17	40	13
CTTTTAAGTATTCACT	ref_4553_reverse	9	22	22	14	28	22	25	11	31	16
CAGACCAGCTGTCTAA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCGAAGCGGAAGT	ref_4553_reverse	6	6	2	7	12	9	11	4	13	8
TACCCTCCAAGTTCCC	ref_4553_reverse	4	8	5	2	11	2	7	3	8	4
CCTGCTCGGAGTCAGC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCCCGTACATGGT	alt_4553_reverse	59	110	73	60	119	72	108	66	109	69
TCTAAATGTGCTCAAG	ref_4553_reverse	1	2	1	1	1	4	6	1	3	3
GCCTTGCAGACACTCC	ref_4553_reverse	5	15	11	6	25	7	31	8	23	10
GTTTGTTCAGAAACTT	ref_4553_reverse	4	5	1	1	5	2	6	3	6	3
CGTCTAACTATTCTAA	ref_4553_reverse	6	18	6	5	15	2	13	8	27	1
TGGGTACGAAAGGCTG	alt_4553_reverse	15	46	23	12	25	25	61	15	31	19
TGGACCTCGCCTGCAC	ref_4553_reverse	4	10	5	5	14	7	12	4	19	7
ATAACAGAGCATTTCA	ref_4553_reverse	27	58	31	22	45	18	51	24	66	23
GAATTTTTGGGAGTCA	ref_4553_reverse	30	40	33	28	59	28	59	37	58	39
ATCCGCCGTGCAAACC	ref_4553_reverse	9	20	12	13	15	6	31	7	14	11
CAAGCTCTACGTATGC	ref_4553_reverse	5	13	7	3	10	9	16	9	4	4
CCCGACACTTCAGTCC	ref_4553_reverse	7	26	11	16	28	11	24	8	31	7
CTATCTGTGACACTCT	ref_4553_reverse	12	27	18	11	30	11	30	9	34	7
GGCACCCCTATGTCTG	ref_4553_reverse	49	58	61	52	72	49	72	38	72	60
ACTTCATCTCAGGAAT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCGGGTGGCACGG	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTTAGCCCTAAAGAGT	ref_4553_reverse	2	12	0	3	8	4	7	4	11	2
CTGGAGGTTTTCATTT	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTTATTGAATGCG	ref_4553_reverse	26	41	12	20	33	30	28	12	53	22
TCCCTCAGTATCCTTT	ref_4553_reverse	10	31	19	12	22	17	40	13	28	15
GTCGTTAGCAAACACT	ref_4553_reverse	15	35	22	10	36	20	43	26	28	16
TCATCTTATGGTGAGT	ref_4553_reverse	15	11	6	8	6	3	11	3	10	5
TATATATTGGCTTTGG	ref_4553_reverse	61	103	88	55	115	61	112	44	115	44
TAAAATACTCTGCAAA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAACTGCCCAGAA	ref_4553_reverse	4	7	3	4	11	1	7	9	11	3
GTGATAAAATTTATTT	ref_4553_reverse	66	100	86	81	119	71	117	61	111	63
AATCCCACATATATTT	ref_4553_reverse	12	10	9	11	9	7	6	7	12	6
GTGGTGGTAAACGTAA	ref_4553_reverse	9	20	12	8	17	15	23	8	17	8
GTTACGAGAACTTAAC	ref_4553_reverse	5	4	5	3	5	3	4	5	8	1
AGGTGTTTGCCCTTGA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTTCTTCTACGGA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGTCTAAACAGAA	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGCGGCTCTATAT	ref_4553_reverse	20	31	25	21	42	27	31	18	48	21
AGGGGGACTTCCGTTC	ref_4553_reverse	3	8	8	6	10	2	18	6	11	3
CTTGGGGTTCCCCAAC	ref_4553_reverse	0	0	0	0	0	0	0	0	0	0
TGAATAACGAAATGAC	alt_4553_reverse	61	97	65	57	99	42	98	58	86	43
GTGTTTAAACTCTATC	ref_4553_reverse	12	16	12	8	25	4	25	16	17	11
TGTACAGTGTTGATTG	ref_4553_reverse	8	12	6	3	11	1	9	3	6	7
TCGCCTTGGGTTTGAT	ref_222_upstream	188	255	266	199	298	169	266	189	319	156
GTGCTTCCTAGCGAGG	ref_222_upstream	2	1	1	1	0	0	2	3	3	0
ATTTTGCCCGTGTGTC	ref_222_upstream	71	100	81	83	96	69	110	71	105	69
CAGTCTACTGACGTTG	ref_222_upstream	32	59	47	42	67	42	55	34	73	36
GCACACGGTCTCTATT	ref_222_upstream	17	31	29	20	26	21	18	18	39	16
CTGGATGCCATAGCAA	ref_222_upstream	44	47	42	45	48	44	56	42	51	28
GCCGCATCCCGGTAGG	ref_222_upstream	4	10	6	10	9	8	11	9	23	2
AGGTAGCTTTGCTCAA	ref_222_upstream	46	66	73	67	71	54	76	36	94	43
AGTAGTCACCCGTTGC	ref_222_upstream	31	60	37	40	58	43	69	35	54	41
CGCTTGAGGCGGTGAG	ref_222_upstream	7	5	2	5	3	4	1	5	3	2
TATTGTCGGGTTATCC	ref_222_upstream	21	18	14	22	22	13	24	18	27	11
TCTCGACTTGTCTGAG	ref_222_upstream	21	49	55	35	47	41	54	34	57	23
AACTCATGGCAAATCA	ref_222_upstream	9	6	5	4	9	4	11	2	12	5
CCGTATGTCCACGTCG	ref_222_upstream	17	42	15	28	38	19	40	14	34	17
CTTGCCGATAAATAGT	ref_222_upstream	33	59	37	41	61	27	57	31	48	33
CTGATCGTCTCTCAAC	ref_222_upstream	20	36	38	26	36	15	30	25	33	24
TGATTTAGATGACTGA	ref_222_upstream	12	9	20	14	15	13	25	14	22	23
TTCTGTGGGTTAAATT	ref_222_upstream	11	8	7	7	6	5	8	4	5	8
TAGGGTTTGTTATATC	ref_222_upstream	18	27	32	28	17	21	24	12	23	13
AAAATATCCGAAACGC	ref_222_upstream	190	174	182	154	177	128	185	165	184	143
GTACGGCACGCAGGCT	ref_222_upstream	17	13	13	10	14	13	17	12	16	10
AGCCCTCCGGTTTATT	ref_222_upstream	42	54	42	60	73	22	64	52	68	30
CTTCGGGTCCAGGGCT	ref_222_upstream	111	157	155	140	160	125	128	144	179	111
GATGTGAGTCAATCCT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACTCATTTGTCT	ref_222_upstream	28	50	36	43	62	41	50	32	37	35
GCAAAGGCTACGGCAC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
CGGTAGGGCTACCGCC	ref_222_upstream	62	82	63	42	68	56	73	40	67	40
CGTGGCAGCTGGTTCG	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TTATTTATTTAGCATC	ref_222_upstream	5	4	16	5	12	15	5	8	16	12
GTTAGCCCTACCCGTC	ref_222_upstream	74	135	99	69	135	66	105	71	150	62
ATATTTCAGGACCCGA	ref_222_upstream	12	12	15	9	16	9	8	12	16	6
CCTTTCTCGTACCTTG	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
CAATCAACTTTCGCTC	ref_222_upstream	4	13	5	6	8	1	12	0	9	7
TAGCAAGTGTGGGCTT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
CCACTCTTTATAGAGA	ref_222_upstream	17	26	20	24	31	20	41	21	37	17
TGGTAAGACGTTAGGT	ref_222_upstream	27	28	34	27	35	26	34	28	33	34
AGGGTGTGCATTACCG	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACTTTATTCGAA	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAGAACGTTCGCA	ref_222_upstream	106	114	136	111	145	94	126	101	137	87
CGTGTGTGCCATCTGC	ref_222_upstream	2	11	6	4	5	4	6	7	16	4
TAAGGCTCAATTCGTC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
GACCTGTACACATAGC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCACTGAGGGCGT	ref_222_upstream	15	12	12	15	14	5	14	11	16	12
CAAATGATAGGGCACG	ref_222_upstream	26	34	28	15	41	26	28	24	43	22
GTATACCTAATCACAC	ref_222_upstream	44	53	38	34	42	46	41	24	68	24
TCGGCTATATACCGAG	ref_222_upstream	5	1	6	3	2	0	5	1	4	4
TCTACGAGGAGACTCG	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACTTTATTCGGG	ref_222_upstream	110	140	115	96	143	101	160	98	114	88
TCACTGTTCAAGCACT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGCCTCCAACATA	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
CAAGCTTCGATTTATG	ref_222_upstream	3	3	1	1	2	0	2	2	1	0
ATTACTTAGCTTTCTG	ref_222_upstream	8	9	7	9	19	10	8	11	13	12
TGGTAAGGACTACGGG	ref_222_upstream	8	16	10	10	10	14	11	10	5	11
GCCAGCCACTAACTCT	ref_222_upstream	10	30	18	13	32	7	51	12	35	11
CTGCCATAGTTCCCGG	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
GGAACGGCTGAGGACT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGTGATTGTCCCC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
ACGCATCTTCCCGGCG	ref_222_upstream	28	36	36	23	39	36	43	30	46	31
CGGGGATCGGGATAGT	ref_222_upstream	29	45	47	31	45	38	55	36	39	28
ATTACTCGTATTAGAT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
GCCATCCCGGTCAGTA	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTCCTAGTATTAA	ref_222_upstream	14	16	12	12	24	14	23	21	19	16
CAATCATTCGAATCAA	ref_222_upstream	18	22	18	23	29	25	25	15	26	20
CTGTATACTTCACCTG	ref_222_upstream	24	20	15	15	33	17	34	16	30	11
GCTGCATGGCCTACGG	ref_222_upstream	135	110	167	133	135	105	133	128	136	146
CTGCAGCATGAACGAC	ref_222_upstream	6	13	15	6	1	10	24	6	10	9
TTTCCCTGGGACGAAT	ref_222_upstream	13	15	21	9	16	5	18	12	17	9
AGCTCCGTTATTAAGG	ref_222_upstream	9	14	11	13	17	6	8	4	9	5
GGTATTATTTAGCTTC	ref_222_upstream	31	37	59	37	33	40	45	37	23	34
TTGGAAATGAGCTTCT	ref_222_upstream	37	29	35	47	37	41	28	41	44	31
CATAGTCCTCTTCTAG	ref_222_upstream	0	0	0	0	0	0	2	1	2	1
TCTGTCAAAATTCCTC	ref_222_upstream	0	3	2	0	2	2	6	0	0	2
TGGGGGCTGTTACTCC	ref_222_upstream	12	10	8	16	19	7	10	17	15	6
ATCTTGTATATGTATG	ref_222_upstream	70	127	101	66	98	69	110	69	111	64
CAACCTTTACGTAATC	alt_222_upstream	124	123	133	110	129	87	119	113	152	94
AATAACAGTGTTGTCA	ref_222_upstream	7	12	13	13	12	14	11	8	11	6
ACTAAATCCCTATAAT	ref_222_upstream	72	74	102	66	82	61	95	71	99	75
TACGCGGGGTCGGGTT	ref_222_upstream	2	5	7	3	2	2	4	7	4	3
CTAACAATATGTTTGT	ref_222_upstream	26	11	21	17	12	21	18	19	13	20
AGGGTAACCATTCGGC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTTCCGTCCTTAC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGCCACATCTAGG	ref_222_upstream	29	56	51	56	50	34	49	35	63	36
TATCTGGAGTGATATG	ref_222_upstream	28	24	42	24	36	28	40	39	46	29
AATAAGAGCGTTCTTG	ref_222_upstream	38	44	39	42	58	29	54	40	44	37
ATTCGCGGCGAGGCTT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
AACTAGTTGCTTGGGC	ref_222_upstream	45	52	73	48	64	53	61	45	63	51
ATAGTGTCGGTTCGTG	ref_222_upstream	30	46	37	36	51	32	62	25	43	34
GGCTGCTCATTTGTTG	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTTGTAGATACTT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCTGGTCCTTAGT	alt_222_upstream	8	5	8	5	18	5	11	3	13	9
AGACGGTGCATGCAAA	ref_222_upstream	7	4	5	5	6	1	4	6	4	4
TATTGAGACCCGTCTT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGCTAGCCACTAC	ref_222_upstream	17	22	34	24	23	19	33	24	28	17
TCGAGCTCAGACAAAG	ref_222_upstream	71	79	90	58	79	65	89	60	91	67
TGGGTAACCATTCGGC	ref_222_upstream	155	183	185	151	170	162	145	162	160	118
CGTATTCCAGGTAAGG	ref_222_upstream	22	34	35	28	38	34	40	29	43	33
ACCCTTCGCGGCCACG	ref_222_upstream	9	22	24	17	31	10	26	10	17	12
TGGACCAGTTCCCTTG	ref_222_upstream	24	35	28	31	32	25	31	31	54	17
GTCACCCGCATCCGTC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TAAATAAACCCATGGT	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGCCGGTTGTGAT	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAACTTCGTTAGT	ref_222_upstream	20	19	26	7	25	16	17	22	27	15
TCTCTTCATGAGGTTC	ref_222_upstream	52	35	44	47	55	33	39	35	42	34
TTCCGGCTTAGCATGG	ref_222_upstream	92	39	96	71	57	72	52	69	60	57
TAAGTATACTTGAACA	ref_222_upstream	32	38	38	27	22	34	42	38	30	36
TAGATTCCTAACGTGC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TCGATCTTGACGTAAT	ref_222_upstream	74	94	103	72	109	58	116	61	122	81
TCAACGCCCCGCAAAG	ref_222_upstream	35	36	42	32	36	45	33	30	51	40
GCCGCCAGCTGGGCAA	ref_222_upstream	37	48	40	47	55	31	56	26	62	26
GTACCCTCTTTCCTTC	ref_222_upstream	0	0	0	0	0	0	0	0	0	0
TGATCTGGCCATTGTC	ref_222_upstream	50	48	51	63	69	52	58	38	59	37
TTTCTGGATTTATGTT	ref_904_reverse	28	45	45	37	36	39	42	31	41	38
ACGCCTCGACCCACTA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TGCCTTGAAGTATGGT	ref_904_reverse	6	4	10	12	11	7	13	7	6	8
ACTTCCCAGAGCCAAT	ref_904_reverse	12	17	17	11	21	9	20	20	16	10
CGATGGCTGCCATAGC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTAAAGTTACATG	ref_904_reverse	47	46	55	43	48	43	66	38	44	37
TGTGTTGTCTGACGTA	ref_904_reverse	45	62	46	42	50	38	61	45	46	47
TTAAGGCCTTATCGTC	ref_904_reverse	11	12	9	5	19	5	11	6	15	9
CTCTGCATGGGGAGCC	ref_904_reverse	21	28	25	21	37	15	20	25	46	24
TATCGAACAATGTCTC	ref_904_reverse	20	37	23	25	46	16	29	18	39	29
GTGCGCAGGTCCCGGT	ref_904_reverse	10	24	21	16	17	17	17	17	24	23
GAATTCAACCTGTTAA	ref_904_reverse	19	18	21	23	29	12	21	9	25	10
TTCCGAAACGCAAACC	ref_904_reverse	24	17	25	12	23	9	19	24	21	16
ACTGGAGTCCGTATGA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GAACCTTCTGAATTTG	ref_904_reverse	16	20	10	6	16	16	18	10	11	6
CATTTTTATCCATCTA	ref_904_reverse	74	67	51	66	83	50	83	58	86	52
AGCACTTCCTGACCTG	ref_904_reverse	34	54	43	40	46	28	66	26	58	28
CCGTAGGTAAACAAAC	ref_904_reverse	50	39	43	33	36	41	46	38	48	26
ATTAGATTCTCAGTTG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TTTAATCTGTGGGCCG	ref_904_reverse	28	33	33	28	37	23	29	25	35	22
CACAAGTCATAATCGT	ref_904_reverse	15	28	14	15	25	16	38	11	25	19
GTTGTGAGTCATATGG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTTCGCGGTTTCC	ref_904_reverse	124	280	132	152	240	105	250	117	305	111
TCGGTATGGCCTATCG	ref_904_reverse	5	0	2	2	0	0	2	1	1	0
ACACCTGGTCAGCACC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
AATGCCTTATCGGTCA	ref_904_reverse	44	70	61	53	64	49	81	47	69	61
AGCGTGATCCACCCGT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ATCAAACGTGAATAAG	ref_904_reverse	21	24	25	17	30	18	27	21	24	23
ACGGTAGATATACCCC	ref_904_reverse	0	1	1	3	0	0	1	0	0	1
CTGGCGTTTTAGCTCT	ref_904_reverse	336	445	370	293	429	315	443	277	447	281
TTTCGGTTGTACAGAG	ref_904_reverse	10	19	15	9	20	16	11	6	11	8
TTGATGCAGCTTATAT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCCGATGTGCTCCTTG	ref_904_reverse	3	3	1	3	5	3	3	3	5	1
GTGGATTTTGTTCAAC	ref_904_reverse	53	78	57	43	64	51	72	38	88	38
TGTTTTAGTTGAGCAG	ref_904_reverse	54	105	83	60	85	53	92	57	109	57
GTGTCTATTACTCAAC	ref_904_reverse	43	74	62	41	68	30	57	45	87	34
GGCAGGACTAGTCGCT	ref_904_reverse	4	12	10	10	11	11	13	12	19	12
ATTCATATTCGAGTCT	ref_904_reverse	5	5	3	5	11	6	11	8	6	3
CACGTATCATCTTTGG	ref_904_reverse	5	17	16	11	28	10	24	16	10	7
CGTAAAAGAGACTTCT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTGATGTCGGTAT	ref_904_reverse	18	34	43	19	35	23	35	26	33	29
TTAGTCCTGTGCCCCG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCGTACTTAGAGTATG	ref_904_reverse	17	27	21	20	32	18	33	14	28	13
AGGCAAAGTCGAAACC	ref_904_reverse	0	6	1	5	3	1	2	1	6	1
CCTATCGCATGCGGCC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ATTGAAGAGCGCAGCT	alt_904_reverse	15	21	13	18	22	26	22	15	24	9
AACCCCAAACCGTCAT	ref_904_reverse	21	34	32	29	30	19	39	27	44	15
AAGCGCGTAAGAAGGG	ref_904_reverse	137	161	169	139	151	118	157	113	174	135
TGAACCGGACTGCAAC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTAAAGGGAGTCC	ref_904_reverse	18	25	18	8	21	25	30	13	20	19
TTAATATTTTTTTTCT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAGCCATCAGCAT	ref_904_reverse	13	29	20	17	30	14	33	13	35	9
ATAGCGCGTTCCGGAT	ref_904_reverse	4	12	9	7	13	10	15	9	8	7
TTCGGCTCCCCTCAGC	ref_904_reverse	16	35	31	28	51	21	56	19	72	21
TATATCGTTCCGCTAT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TGATCGTCTTGGAGAC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCTACCCTTAGCA	ref_904_reverse	23	43	20	14	39	20	44	28	37	17
GGCGTGTATGACCTAT	ref_904_reverse	9	3	5	4	5	2	5	6	7	7
GATACCGCGTGTTTTG	ref_904_reverse	29	40	34	25	56	27	34	37	56	22
TCGGGAAATGCGGGGA	ref_904_reverse	20	13	15	20	20	13	23	14	25	18
TGCCTTAATGATTAAA	ref_904_reverse	18	31	26	24	52	33	52	22	40	25
CGCAGGCTTCAGTCTG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCCTGCTACTAGA	ref_904_reverse	11	25	14	11	35	6	21	9	35	8
CCTGTGGTCCCCCAGA	ref_904_reverse	11	9	7	10	13	7	11	8	6	9
ATTCTGGCTGGCAGCA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCTACGGCATGGAATC	ref_904_reverse	13	18	13	17	14	14	15	12	16	15
CCATTTTCTTTCTGAT	ref_904_reverse	1	7	4	1	6	0	4	1	8	3
GCTTTGAATCCCTCAT	ref_904_reverse	1	3	5	2	4	2	3	0	5	1
CTTGTGGCATAACGGG	ref_904_reverse	18	21	17	21	11	14	21	12	28	9
AGAAGTTAGTAATTCG	ref_904_reverse	21	17	33	25	32	20	24	17	30	11
TGCCCATTATCCGATT	ref_904_reverse	56	70	33	33	64	33	59	29	83	56
GCATGCGGTGACCTAT	ref_904_reverse	0	1	0	1	2	0	1	0	0	0
TAAAATGCTCTTCGGA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GCATACAATCCTTCCC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ATAGGTACTGTGATGG	ref_904_reverse	64	82	71	44	95	65	91	55	90	63
GCTTGATTAAGTTCGG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTTCCCCTCCCTT	ref_904_reverse	7	7	10	5	11	4	8	8	13	6
CCATCCAGACGCGTCA	ref_904_reverse	1	8	4	1	5	4	7	5	10	2
TGATAGAGGCTCGTTG	ref_904_reverse	2	1	2	6	6	4	2	1	12	4
TCTTATCTGAGTCTTT	ref_904_reverse	1	1	2	1	8	0	5	5	6	2
GGATTAATTACATTCG	ref_904_reverse	21	48	41	35	41	28	41	31	43	30
TCGCTTCTACGGGGGA	ref_904_reverse	9	24	17	17	28	19	12	18	27	16
TCTCTATCAGATCTTG	ref_904_reverse	12	14	15	12	17	15	16	8	8	8
TGGAGTTTCGGGGCTG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCCTGGGGGATCTCCG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GAATTCGTAAGCTGGG	ref_904_reverse	27	42	48	39	62	33	44	35	48	31
CGAAGTTTATCATGGG	ref_904_reverse	238	343	268	215	300	219	295	202	339	227
CAGCTATTGGGTGGGT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTTGTGTACGTGT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GGGAGTATGCCGATAT	ref_904_reverse	11	12	15	14	24	10	24	11	24	6
CATGAATCCGGCTCTC	ref_904_reverse	2	0	11	3	3	2	5	2	10	4
ATGAGTTTAGGTATTG	ref_904_reverse	5	2	3	3	10	2	6	1	6	2
AATATTTGCACCTTTT	ref_904_reverse	29	48	38	26	44	37	37	39	44	27
TGGTCGGGGATTTAGA	ref_904_reverse	28	34	35	21	37	27	34	24	38	19
CATTGTATATAAATGG	ref_904_reverse	4	1	6	3	2	4	4	2	5	4
GGTTCTCTCTGCCCTT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCGTCTTGGAGAC	ref_904_reverse	7	14	7	6	14	6	18	7	12	13
AGTCCTATCTTCTTCC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCCTAACCCGTGT	ref_904_reverse	18	6	13	15	13	8	10	13	8	5
GTTTATGCTCTCCTAT	ref_904_reverse	1	4	1	1	0	4	2	1	4	3
AGGCAGGCAACTTCTT	ref_904_reverse	38	45	38	55	52	29	57	42	47	33
CTGCTTTGTCCCTGGT	ref_904_reverse	54	76	66	51	76	44	82	52	103	48
CATTGTTCGTCCCCCT	ref_904_reverse	5	8	5	5	7	6	10	3	12	4
GTTGTTTCCTCCTTGA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CGGACGGCAACCCCGA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CTTATGGTATTGCCCT	ref_904_reverse	12	21	12	15	18	9	14	8	19	6
AATTACTAACGTGCTA	ref_904_reverse	33	53	48	37	55	37	82	32	63	38
AGTATTTGTGCCGCAC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTCGTAGTGGCTA	ref_904_reverse	51	72	56	27	48	48	72	28	69	35
GCCCTACTTGCCTCAA	ref_904_reverse	18	33	40	39	38	22	37	34	37	27
CCCATTGACTTCCCTC	ref_904_reverse	33	48	42	35	45	26	44	40	47	28
TCTAAGTGTAGCTGAC	ref_904_reverse	55	98	78	77	130	60	128	54	113	60
AGCATTACGTGTGATT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTTAAGAAAGAAT	ref_904_reverse	23	21	18	15	29	13	25	15	28	14
AGTTGCGTGATTTCTG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTAACGAATGGTT	ref_904_reverse	65	74	62	69	68	61	81	38	76	56
CTCCCACACTGTTAAA	ref_904_reverse	8	29	19	5	36	11	30	9	50	11
AAGCGATAAATACCGC	ref_904_reverse	9	15	18	12	10	15	21	6	23	12
GAATGACTCCAATAAG	ref_904_reverse	31	37	31	27	35	19	44	19	35	18
CTCTCATACAGTTGAT	ref_904_reverse	2	3	4	7	3	1	2	3	0	6
CGGGCTGCGATACCGT	ref_904_reverse	44	70	57	50	49	40	70	34	62	27
TTATAACCTATGTCTA	ref_904_reverse	23	36	22	15	34	25	30	27	34	17
AGGTTGTGATGCGTTA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGCCCTGGTGCTA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
AACGTGTACAATGCCA	ref_904_reverse	29	46	41	34	39	19	37	34	34	28
CCAAGCTCTCGTACTC	ref_904_reverse	10	60	16	4	57	16	51	14	61	9
AAGGGCTCATCCGTGC	ref_904_reverse	7	6	11	6	10	3	6	5	6	6
TCGAGACTGATTCATT	ref_904_reverse	1	12	6	5	1	4	7	1	13	5
ATAATGTGGCCGTTCT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTTGATCAGACGT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CGTTATTTTTAGAGCT	ref_904_reverse	16	22	21	17	23	24	21	27	24	14
GACGCTATGCCTCCAA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CTATATCGAAGGGCTG	ref_904_reverse	12	15	16	12	14	14	12	4	17	10
CTCGGCGTAAACCTAG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTTGAAGTAGCCG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGCCGTTCGGATG	ref_904_reverse	5	11	8	3	10	2	7	4	12	2
CTTTGGCCTTCCGCAG	ref_904_reverse	20	19	40	18	26	24	41	27	34	13
ACTTGGGTGTGCTGAA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCAACAGGGGTAA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CACTCACCTTATCATA	ref_904_reverse	1	23	2	3	19	4	14	7	20	4
ACACTCTACTTTTCGC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
AAAATTGTCTCGCGGC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CCACTATCATCCGTCC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGGTGCTGAATTA	ref_904_reverse	3	7	1	5	6	1	4	2	1	2
TATCTACGCCTGAAAG	ref_904_reverse	18	27	21	13	19	15	15	9	21	11
TGTTGTATATCCCTAC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GATTGCCATCTGCATT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTTCGCATTGGCG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGCTGGCTACCAA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCCATCTGCATT	ref_904_reverse	36	81	57	56	71	44	100	49	117	38
TATATATCGCCTCTCA	ref_904_reverse	24	23	27	33	27	22	37	22	21	30
AGTAATGCTCAGACCG	ref_904_reverse	12	36	25	22	38	22	45	23	34	33
GGTATTTCAAGAGTTG	ref_904_reverse	18	50	46	25	49	35	39	23	34	33
CTATCCGTGAAGCCCT	ref_904_reverse	2	5	3	3	2	1	8	3	1	2
TCGACGGTTATCTATG	alt_904_reverse	16	39	27	24	35	20	56	10	47	12
TTCCTCCAGCTGCGTA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTTTCTATGGGGT	ref_904_reverse	19	37	21	16	33	20	23	21	35	16
AGGCTTTCCCAATTGT	ref_904_reverse	15	15	11	4	15	7	12	11	12	13
ATCCCTCGGTTTAACC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCGCCAGCCGCTG	ref_904_reverse	60	53	63	35	57	43	55	44	63	34
TGATACGCTTGAACAG	ref_904_reverse	28	42	31	28	44	29	44	31	35	18
AGATTTAATTCACCCG	ref_904_reverse	29	36	24	29	24	26	35	28	39	27
TCTCTTATTGATCAAG	ref_904_reverse	6	14	11	17	21	15	17	9	17	7
GGCGTAGAATGTTGAG	ref_904_reverse	64	79	64	81	87	74	100	56	80	44
TCGGTGTGGCCTATCG	ref_904_reverse	39	51	31	33	53	32	63	34	62	40
TCTTCGTGCGGAGTAA	ref_904_reverse	9	16	20	14	14	19	16	10	20	6
GATGGTGCGGCGTATG	ref_904_reverse	0	5	6	0	7	2	3	3	7	3
GCCATGCCCTAGGGCG	ref_904_reverse	32	21	27	24	36	31	35	15	46	20
AGCGGTACACGACACG	ref_904_reverse	46	68	41	50	96	54	72	44	82	38
TAATCAGACAGCGAAG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTGAGAGGAGTAT	ref_904_reverse	90	134	94	93	124	78	165	82	164	88
TACTGGGAAAGGTTTG	ref_904_reverse	51	73	46	37	73	50	90	58	83	37
CTACGCATACCATCCG	ref_904_reverse	11	15	22	11	21	8	19	16	27	9
TCGAGCTCGGGCTTAT	alt_904_reverse	190	280	216	225	250	203	254	159	299	143
CGTTCAATGGGCTATT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGCTGAGTACTGG	ref_904_reverse	20	49	26	24	38	17	32	27	44	27
TCTCCCGTTTGGTCTA	ref_904_reverse	43	70	48	26	62	30	67	29	78	27
TGCATACACGGCGTGT	ref_904_reverse	27	31	32	17	38	21	51	26	31	34
TAGGTTCCCGTTAAGT	ref_904_reverse	42	80	58	51	80	49	57	54	80	46
CCTGCCGGCTAAATAC	ref_904_reverse	31	43	41	26	39	24	43	25	50	31
TCAGCTTCGTGGTCAC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GCTGAGCATACAGTGC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GCGATGGTGGTCCCCG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TATATTTCCAAAGCTC	ref_904_reverse	8	11	6	8	8	5	8	3	9	8
CTTATCGTCGAGAATG	ref_904_reverse	53	69	59	79	87	45	78	52	64	57
CAGGCAGGGAATTCTA	ref_904_reverse	222	327	306	225	341	263	335	221	358	246
ATTGAGATACTTGTCC	ref_904_reverse	5	23	9	8	20	11	13	9	14	11
GACGTCATAGGGTGAC	ref_904_reverse	5	2	4	5	3	4	5	4	11	5
GTCCCTTTGTCGGCTA	ref_904_reverse	32	43	23	20	41	27	41	16	34	20
CCAGTCCTGGCTCCCC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCAGTGACGAGGC	ref_904_reverse	19	33	24	33	35	23	27	26	39	21
CAAAACGACTCACAGA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TATCAATTAGACTCCT	ref_904_reverse	14	13	15	15	19	12	17	15	11	4
ACGGGACCGAGCATGC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTCTCCTCGCAGG	ref_904_reverse	6	8	5	4	14	7	11	4	5	3
GTACACGACTCGTCCA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCTTAAGACACGG	ref_904_reverse	24	30	27	20	38	18	28	34	29	21
TGTCATGGCTTCATTG	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CCTTATTATGGGGATC	ref_904_reverse	19	20	17	15	32	12	39	22	31	15
TACGTTAGGGCGGATA	ref_904_reverse	67	90	92	62	73	66	73	78	96	67
CAGAAATTCCAGTCAT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GGAATCCTAGCCGACC	ref_904_reverse	26	55	31	28	52	33	46	30	64	26
TCAGACTTCATCTAGA	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
CGGATCTATCTCTACT	ref_904_reverse	28	34	35	39	24	25	46	19	30	18
CGAGTCACTTCGTGTT	alt_904_reverse	7	8	12	10	10	14	8	10	11	2
GCGAACCTTTTTTTAC	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
GCCCAAATTAACTGTT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCGCCACAGGCAC	ref_904_reverse	6	13	12	9	3	9	8	5	7	5
TTTGGGAGCTAGACTC	alt_904_reverse	2	5	8	4	12	11	11	7	12	10
CACTCGATAACCCTTT	ref_904_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGTGCGATTGTGT	ref_904_reverse	6	1	4	7	2	0	4	1	2	4
ATTCCCACTCTGTGTG	alt_6067_new	20	27	23	29	32	18	19	17	26	13
AATTGTACTGCGTACA	alt_6067_new	62	78	87	68	83	60	92	56	95	57
ATCTCCTAGCCTATTT	alt_6067_new	7	7	7	5	4	9	13	7	7	11
AGGTATATCATATTTT	ref_6067_new	68	87	107	86	101	91	94	56	128	63
CAGAGGTACGGTACGC	alt_6067_new	31	61	58	31	48	40	50	40	57	27
CACTGCGAATCCTAGT	alt_6067_new	6	4	3	3	2	1	3	1	3	4
GCCAAGTTAATGGGAT	alt_6067_new	20	45	58	38	61	42	31	47	56	43
TTGCTTTCTCCTCAAC	alt_6067_new	51	83	68	57	77	54	68	51	85	40
CTGTACGGTGTAGGGC	alt_6067_new	44	74	67	52	48	51	79	47	65	46
TCACCGTGATGCTCAA	alt_6067_new	34	112	37	25	112	39	117	36	118	26
TGATGTATGTGACACT	alt_6067_new	7	10	4	10	11	6	5	7	10	7
TTCCTCGCCTATATTG	alt_6067_new	18	13	11	12	15	10	19	7	11	12
AAAGCCACGCAAATTA	alt_6067_new	35	38	45	43	57	38	61	38	60	29
TGGAGTTGTCTCTTTC	alt_6067_new	14	18	22	21	22	20	20	20	33	16
CCACCTCGGAGAGACG	alt_6067_new	35	47	46	32	35	27	46	28	42	25
ATGGCCCGGAAGGCTT	alt_6067_new	21	35	29	29	26	20	22	16	12	20
TTCCGACTCTTGTTAA	alt_6067_new	98	137	129	122	141	101	134	96	130	116
AGTTGAGTGAATTTCG	alt_6067_new	0	0	0	0	0	0	0	0	0	0
AAGGTACCTCTAATCG	alt_6067_new	0	0	0	0	0	0	0	0	0	0
CCCGGTACGAAATTGC	alt_6067_new	23	27	25	19	31	18	27	19	29	17
GTATACGCACGACTAG	alt_6067_new	19	32	25	25	27	20	23	24	23	28
ACCCTAGGACGTCCTC	alt_6067_new	2	3	9	2	6	7	5	0	10	4
ATATCTTAAGTCTTCG	alt_6067_new	47	66	70	52	39	42	65	43	61	47
TCTGTACGCGCTGGTC	alt_6067_new	0	0	0	0	0	0	0	0	0	0
GGCGTTAGCTCGTGCA	alt_6067_new	0	0	0	0	0	0	0	0	0	0
GTCTTATACAGTGGGC	alt_6067_new	1	3	7	3	4	5	8	4	8	5
GGTCGTGACTTAGAGT	alt_6067_new	6	21	7	8	20	13	15	8	15	8
TCAGTCGATACCGGCG	alt_6067_new	27	37	40	33	46	29	41	31	38	31
CGAGCTCTGGTGCTTC	alt_6067_new	0	0	0	0	0	0	0	0	0	0
GGATTTAAACAAGTTA	alt_6067_new	47	52	78	50	44	46	45	45	58	46
CCCGTTTATATTTCTT	alt_6067_new	19	23	19	14	16	13	20	19	12	16
TGCCCCGCCTCTTATA	alt_6067_new	26	55	54	32	70	35	68	38	58	40
GCATTCGCACTCCACC	alt_6067_new	27	47	47	31	57	33	55	28	45	31
GGTTATCGTCCTACAC	alt_6067_new	0	0	0	0	0	0	0	0	0	0
TTCTCGTATGCGCGAG	alt_6067_new	0	0	0	0	0	0	0	0	0	0
TCTTTAGTGTGTTGTT	alt_6067_new	12	22	20	16	20	18	22	21	17	16
TGGGGTTACATATGGA	alt_6067_new	43	61	50	39	47	44	54	42	60	30
CACTATCCCGCTATGC	alt_6067_new	26	35	12	20	28	14	31	14	38	20
GATTGTGCGAAATTTA	alt_6067_new	20	35	26	18	29	23	25	24	26	14
TTTGGCTCTGTATATC	alt_6067_new	6	4	9	1	6	2	6	10	4	2
GAGTTTCCTCTTCTTA	alt_6067_new	63	43	89	76	67	68	81	53	70	50
TCCAGTATAAAACCAT	alt_6067_new	0	0	0	0	0	0	0	0	0	0
TATTTGTACTTCGGAC	alt_6067_new	11	22	12	20	18	8	20	12	18	21
GGGAGCTTCATTTCGG	alt_6067_new	9	11	8	7	2	3	11	1	7	10
AACTCTTCGTAACCAT	alt_6067_new	13	13	16	14	23	15	18	15	19	13
CCCCACCATTTTTCAG	alt_6067_new	33	61	28	41	61	19	61	33	57	22
ATTAGATTCTAACTCT	alt_6067_new	29	23	24	22	27	17	24	13	33	18
TTGCGGCGGCCAATTC	alt_6067_new	21	17	21	24	17	18	36	12	24	18
CAGTTCCAAATATCTT	alt_6067_new	0	0	0	0	0	0	0	0	0	0
ATCGATATTGACCTTT	alt_6067_new	16	18	22	24	15	25	16	19	24	19
CCGAACACATCGCCTA	alt_6067_new	9	33	9	7	26	9	50	5	36	3
CAAGATGTTGGCCCGT	alt_6067_new	19	20	29	15	21	13	22	12	17	10
GAACCGGGTGTTTGCG	alt_6067_new	100	120	88	76	110	89	99	83	141	81
TGAAGCAGCCTAGACC	alt_6067_new	8	10	4	0	11	2	10	7	9	3
TCCTGATAATGCGTCC	ref_6067_new	63	86	64	62	102	50	103	65	94	52
ATCCGTAGGGGACACG	alt_6067_new	223	323	280	253	306	221	338	233	393	228
GAACTGCGCGCCTAAG	alt_6067_new	14	27	15	27	28	14	19	21	24	5
ATGCGGCGGGTCCTCT	alt_6067_new	36	22	36	34	39	21	35	37	45	33
TCGGTCATCCGTGTTA	alt_6067_new	0	0	0	0	0	0	0	0	0	0
GAGATTTCTGCCTATA	alt_6067_new	52	72	64	74	76	63	70	52	87	50
TCGAGACATAAGCTGG	alt_6067_new	13	17	26	15	17	9	13	18	24	16
TTCAGCAGAGACTTAT	alt_6067_new	19	22	22	17	19	13	28	16	21	13
TTTATAGGCATGTTCA	ref_6067_new	43	94	74	88	82	54	82	58	98	67
CTCAGCGATGAGTATC	alt_6067_new	20	35	37	25	27	25	36	38	35	23
TAGCTTAGGGTAATCG	alt_6067_new	33	38	39	24	49	35	35	27	39	34
AATAGATCCTTTGTCG	alt_6067_new	46	42	50	46	67	46	53	38	65	44
CGATAGGATGCCCTAT	alt_6067_new	8	20	15	15	15	9	15	10	14	5
GAGAAGAGTAGCCCAT	alt_6067_new	96	118	136	110	127	111	101	111	139	109
CTCGTGTTTGAGTTTG	alt_6067_new	4	10	2	7	8	3	17	3	27	4
AATAGTCTTCTATTTC	ref_6067_new	18	18	20	18	16	13	19	12	21	14
GGTTGGAATATATTTG	alt_6067_new	136	162	176	105	164	118	163	100	158	107
CAAAGCCTAGTTTTCG	alt_6067_new	0	0	0	0	0	0	0	0	0	0
TTCCATTGAGAGGACC	alt_6067_new	0	0	0	0	0	0	0	0	0	0
TCCTTGGAGGCGAGCG	alt_6067_new	20	39	41	38	40	26	44	26	45	19
TTACTGCGGCCCCTCG	alt_6067_new	10	15	13	10	14	13	17	11	15	13
TGGGGGCTACACGGCC	alt_6067_new	18	21	13	20	36	21	27	20	27	19
TCCCGTATTAGAGCTA	alt_6067_new	12	19	17	10	14	10	26	12	19	15
GTGGCGTTCGGGTAGG	alt_6067_new	79	88	76	50	69	81	85	65	107	65
CGCTGCCGATGCGATG	alt_6067_new	29	38	56	41	40	28	40	35	32	32
TTCCCTACGTTGTGGA	alt_6067_new	16	27	20	21	39	13	23	15	41	20
ATTCAGTAGGGCTGAT	alt_6067_new	2	3	2	1	7	1	3	2	2	0
ACTCCTTCGGCCCGTT	alt_6067_new	0	0	0	0	0	0	0	0	0	0
GCAATTAATGTGGGCC	alt_6067_new	1	1	0	1	4	2	0	1	3	0
CGGTTCTTTGTATTCC	alt_6067_new	0	0	0	0	0	0	0	0	0	0
ATAGGCCCTCGGTTGG	ref_5539_upstream	92	97	100	96	99	93	103	81	118	93
TCTCGGATTTGTGTAA	alt_5539_upstream	29	31	34	36	27	30	37	28	37	35
GGTCTACTACCTATCC	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCTAATTGGTCCA	alt_5539_upstream	11	20	21	7	17	10	8	7	20	13
AGCCTCCCCGGCTCTC	alt_5539_upstream	4	34	15	10	30	4	35	8	42	8
AGCCTGCTCGATAGGG	alt_5539_upstream	18	17	10	19	23	13	17	10	19	11
CCAGGTAAAAATGATT	alt_5539_upstream	146	158	171	147	156	139	166	127	175	133
GCGTCTACAAAGAGTT	alt_5539_upstream	20	20	18	19	22	13	23	13	24	11
AAGCAACTACACTACG	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCGGCCCTCTATC	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
CACGAAGATGTCTAGA	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTCTCTTTTTTGT	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
ACAGAAACCATCAGCA	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
TCGCACGTCCCACGCC	alt_5539_upstream	13	18	21	19	20	13	26	17	24	10
TCGGATTTGTTTTTTT	alt_5539_upstream	17	17	23	19	15	14	13	12	8	13
GCCGTAACGGAGAATA	alt_5539_upstream	11	7	9	13	9	1	7	10	9	5
TCTCCTATTTACGCTA	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTTTTATGTTGAG	alt_5539_upstream	43	40	71	61	68	53	54	61	72	55
GTTTTGAGAGTTTTGC	ref_5539_upstream	70	61	68	70	62	67	60	51	78	63
GCTCTCACATGTGAAC	alt_5539_upstream	13	15	11	9	11	12	10	15	14	8
CGACTCAAGTCTTGAT	alt_5539_upstream	35	42	36	36	32	30	37	30	41	31
TACGCCTTATAGGTCT	alt_5539_upstream	14	11	11	14	12	11	16	5	21	12
CATTGTTATAGCTAGT	alt_5539_upstream	3	7	10	10	9	11	6	3	9	3
GAATTAATCCCCCTGA	alt_5539_upstream	17	18	17	17	24	21	24	20	22	18
CCCCAAGCTGCAGTAA	alt_5539_upstream	51	41	54	52	49	44	58	51	61	44
TTTGTATTGCCGTACA	alt_5539_upstream	19	10	20	12	14	19	22	9	22	11
AACGCAGGGCAGGGTC	alt_5539_upstream	15	8	12	7	15	8	3	8	19	7
AGGAGCTTTGACCCCT	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
TTACCTAATTTGGCTG	alt_5539_upstream	23	15	30	22	18	25	22	17	35	18
GAGGTCTTTACTGGGG	alt_5539_upstream	38	48	54	36	41	44	50	40	54	38
GTATATGCCGACTATG	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
ACACCAGTATCGAAGC	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCTGACCGTGTAG	ref_5539_upstream	225	243	228	218	272	166	275	151	302	194
CTAGCCAATTATTGCC	alt_5539_upstream	7	44	7	7	67	4	64	6	61	6
ACGCGACTTATGGCTT	alt_5539_upstream	30	35	47	39	35	34	29	29	51	39
AATAAAGAGTAAACCA	alt_5539_upstream	8	10	17	14	12	11	14	13	21	15
CTGGGGTTAGCACAGT	alt_5539_upstream	104	129	140	137	136	108	122	114	166	78
CGCTAGTCTACTTCAG	alt_5539_upstream	31	23	37	41	60	37	33	35	49	35
GTTGTTCGGGTGTGGG	alt_5539_upstream	18	16	8	11	8	13	11	18	16	9
TTGATTGCATCGTGTG	alt_5539_upstream	24	34	23	20	26	38	33	22	19	22
GCCTTTCTCTGTAGCT	alt_5539_upstream	12	19	22	15	27	18	21	18	20	11
CTTACGATCTCTATCG	alt_5539_upstream	41	43	70	50	69	32	56	42	52	31
TGCGGGATTGCCAACG	alt_5539_upstream	117	131	133	139	163	123	121	131	129	117
CGCAATATGCTCCCTC	alt_5539_upstream	42	58	66	55	51	50	55	57	65	48
TACTAGATATTTTTCA	alt_5539_upstream	1	3	5	3	1	2	2	1	2	2
ATTCATTTGGTCTCGT	alt_5539_upstream	45	58	50	64	48	43	56	31	41	35
TATAGCCGGGCGGATT	alt_5539_upstream	11	19	13	13	26	12	22	14	25	18
TTACAGTAGGCTGTCA	alt_5539_upstream	5	2	5	0	8	2	5	3	5	6
ACCAGATCCAGGTTGG	alt_5539_upstream	17	21	16	20	24	15	20	11	15	17
CTTAAGCTTCGGATTG	alt_5539_upstream	15	14	27	11	19	14	26	12	26	11
CTTGCTCCGAAGCTCT	alt_5539_upstream	57	63	53	42	48	60	52	57	53	43
TTTCGCAATTTTAGAC	ref_5539_upstream	154	192	167	136	177	128	193	125	163	128
CGGTTCTACCTACCTC	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
TCAACAAGGATACACG	alt_5539_upstream	51	60	80	72	73	63	64	65	82	45
TTTACGATGGGCTAAC	alt_5539_upstream	87	88	92	127	92	80	108	86	115	76
ACTGTTAATTCGGGAG	alt_5539_upstream	5	12	13	10	12	14	13	9	12	5
AGCCGTCATTGGCAGG	alt_5539_upstream	67	81	83	65	75	68	68	54	73	48
ACTTTCGGTGTCGTTC	alt_5539_upstream	8	2	5	2	11	4	4	2	5	7
TGTTTACGCTATCTGG	ref_5539_upstream	50	77	68	68	72	56	76	48	73	51
TCCAATTCAACTTTCT	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
TATTGCGTAAAATCCG	alt_5539_upstream	12	17	22	28	19	14	25	20	29	12
AGCCTGCCGTTTGGCT	alt_5539_upstream	11	12	13	18	19	12	10	11	19	8
TGATTTTCTAGCAGCC	alt_5539_upstream	17	6	17	12	19	22	7	19	10	11
GGATTGCTTTATTGAT	alt_5539_upstream	6	7	7	6	9	10	6	10	13	8
GCAATGATAGTCTCGA	alt_5539_upstream	235	252	289	217	263	259	298	220	316	184
TCCTTGCCAGTGACGA	alt_5539_upstream	18	39	28	24	16	23	26	18	43	21
GGGATCACCGGAAAGC	alt_5539_upstream	12	28	23	10	16	17	26	15	30	11
CGGGCATATATTCGGT	alt_5539_upstream	12	40	31	35	33	37	41	20	36	23
ATCGTCTAGTGTTTGT	alt_5539_upstream	8	12	6	9	13	6	14	11	20	5
GCCTTAGGGCAGCGTA	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTAGGGGCCTAAA	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
TGTGATATTACGGTGA	alt_5539_upstream	16	19	11	11	25	20	23	18	29	13
TCGGAGTTGAGGTGGG	alt_5539_upstream	4	4	2	2	1	2	2	3	4	1
ACGGTCATGAAGAGGG	alt_5539_upstream	25	21	34	24	13	14	19	21	28	25
TTCATGTCGCAAATTT	alt_5539_upstream	38	41	58	58	46	48	44	32	55	38
AATCATCATAGAGGTG	alt_5539_upstream	58	63	69	52	73	73	65	52	71	54
TAATTCTCTGAAACTA	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
GTACTGAGTCGTTAGG	alt_5539_upstream	23	37	36	18	34	19	40	22	42	26
GGCCAGCAGTCTATGG	alt_5539_upstream	68	98	98	101	93	78	95	89	110	71
CGTACGTTGCATCTTG	alt_5539_upstream	15	11	12	13	6	6	19	8	18	10
TTCGCGCATTTTCCAA	alt_5539_upstream	54	50	65	45	53	53	60	45	58	31
GCGTCCGCCGTCTCAT	alt_5539_upstream	32	51	39	39	44	55	43	32	56	33
TAGTTGGTAATTCCAG	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGGTGGAGGTATT	alt_5539_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGTCGTTCCCTC	alt_5539_upstream	21	34	41	29	30	32	28	25	31	26
CCTTTCCCAAACCCAC	alt_5539_upstream	27	52	39	33	41	34	62	34	57	29
CGCCGTCCGAGCTAAG	ref_5539_upstream	59	50	65	66	69	69	64	59	62	41
ATAACACGAGGAACAT	alt_5539_upstream	71	54	88	84	64	65	53	72	55	49
CGTGTTACTAGGTCCA	alt_5539_upstream	1	0	0	1	2	1	1	1	2	2
AGATTCGCCTCCGAGA	alt_5539_upstream	39	41	50	32	42	36	40	28	35	28
ATCATTAATGTTTTCA	alt_5539_upstream	75	89	123	96	95	80	103	92	93	59
CCGCTGGCAGTACGTA	alt_5539_upstream	40	84	34	43	94	29	100	34	93	35
GGACTGGTTTTCCGGC	alt_5539_upstream	19	19	17	15	24	13	28	14	22	11
CTGGTTGAAGTTGCAA	alt_5539_upstream	23	24	26	18	34	18	23	21	31	25
AGAACTTCGATCCGTC	alt_5539_upstream	47	26	34	31	24	42	37	31	35	19
TCTGTGCGCTCTTCCG	ref_5803_new	0	0	0	0	0	0	0	0	0	0
GGACTGCTTTCTCACA	alt_5803_new	115	170	107	121	196	125	233	128	184	122
CCGGTGAGTGAGGGTG	ref_5803_new	7	12	12	8	27	4	21	12	10	10
GCGACATACAAGTACA	ref_5803_new	230	314	292	237	370	224	387	202	398	227
ACGGCGTTCCGCTTGC	ref_5803_new	16	33	20	12	26	21	27	12	17	21
AATGCCTCAACTACCT	ref_5803_new	3	11	7	7	15	5	10	7	9	3
CTGTGACTTATGATCA	ref_5803_new	8	6	1	5	9	9	10	5	15	10
GCCCAGTTGCCGAGAA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
ATCGCGGCAAGCCGGC	ref_5803_new	83	157	101	77	110	94	156	56	190	81
AGAGTATTAAGTATTA	ref_5803_new	1	4	5	3	7	6	12	6	6	2
GATTACGTCCGGCGCT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
ATTGGAAGTTCATACG	ref_5803_new	9	17	15	22	18	12	22	11	29	17
ATGGCAGGTATCAGGA	ref_5803_new	17	34	33	23	56	20	39	33	46	31
TTCCCCAGTGGCTTTT	ref_5803_new	25	47	16	16	28	16	32	16	24	13
CGGGCTGCCGGCCCAC	ref_5803_new	5	15	10	5	15	11	17	9	19	6
TGCACTCTGCTCTGGA	ref_5803_new	13	25	17	14	25	10	23	21	33	10
ATCGCTCAATACAAAT	ref_5803_new	9	10	7	9	14	11	13	7	10	4
AAAGGCCTCGTTTCAA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TTTCACGGGATCTTCT	ref_5803_new	2	3	1	0	0	4	4	0	5	1
TACGGCGAGTTCTCCG	ref_5803_new	0	0	0	0	0	0	0	0	0	0
AATGCGGTTTGTCGGT	ref_5803_new	12	29	15	22	27	12	22	14	21	20
ACACGGTCGCTTGTGA	ref_5803_new	0	5	3	1	9	0	6	3	6	4
TTTTAGCGCGTACTAA	ref_5803_new	9	4	4	2	4	4	12	2	9	3
TTCGTAATACTAGACT	ref_5803_new	12	13	6	11	12	9	16	14	23	4
CCGCGTCTCCTCTTCT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CGTCCTAGCTCCCTCT	ref_5803_new	4	10	3	1	3	7	12	4	12	3
CTAAGAATTAGTAATT	ref_5803_new	32	52	47	39	48	23	67	27	79	25
CCTTGGAGAGTGTGTA	ref_5803_new	9	16	4	6	11	3	14	7	8	4
ATAGTACTGCAGGCGC	ref_5803_new	5	10	10	4	10	5	8	3	14	8
GCGCGTTACTCACGTT	ref_5803_new	0	2	0	0	2	1	5	0	1	0
CATCTAAGGAGCGAAT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
GATAAGGGATTTGATG	ref_5803_new	7	7	7	7	18	7	21	9	18	8
TCATCCTATTGTCTCA	ref_5803_new	56	71	57	61	67	50	65	51	80	63
GGCTTGAATTCTGACC	ref_5803_new	23	29	25	20	27	26	32	12	24	14
GGTATGGCCTTGGTCC	ref_5803_new	58	79	51	50	91	46	56	49	82	68
TGACCGGGCAGGCTTA	ref_5803_new	8	11	16	13	10	4	17	4	11	4
ATGCGTTCGCATTCCT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
AGCTGGCCAGTTTCTG	ref_5803_new	18	19	16	15	35	16	30	23	21	22
AGGCAGCACATTGGTA	ref_5803_new	9	19	10	11	14	14	20	12	23	10
CCGAGCAAATTAGGCA	ref_5803_new	14	14	14	9	16	21	16	7	16	11
GTGATGACTCTCCCCA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CGTCGTGAAGTCGCAG	ref_5803_new	13	24	21	17	30	18	26	11	25	17
ACCTAAGTCGTCTTGT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CTCACGGGACTAACCC	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TTTTCCTATGACAGCT	ref_5803_new	42	79	55	44	50	40	69	54	77	42
TCGAAACTCTCATGGA	ref_5803_new	14	39	21	15	33	28	31	15	39	14
TCCGGCATTCAAGAGC	ref_5803_new	20	28	27	22	31	23	38	12	36	21
AGGATATAGTCTATAA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CGACCTTTCCCTAGTT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TAGCAGCAGCCGTATT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CTCGGATGTTTCTACG	ref_5803_new	5	2	6	1	9	1	6	2	3	0
TGGCCCAAATATAGTG	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TGTCCCGAACAGCATC	ref_5803_new	26	45	32	37	40	16	43	21	37	25
GGTTGGGGAGTGACGT	ref_5803_new	36	45	27	19	28	23	51	31	71	23
CCCGTCATCTGAGTTC	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CTGGGACTTTTGTAAG	ref_5803_new	0	3	3	1	8	4	4	2	3	0
AGGAGTTATCCTCCAT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TGGTCCCTTATTGCAT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CTCCCCTATCACATTC	ref_5803_new	6	125	6	5	138	4	143	3	132	2
TTCCCGCCATCAAGCT	ref_5803_new	10	15	9	9	12	7	15	6	22	6
AAATCGATACAACCCC	ref_5803_new	7	12	3	4	9	2	10	4	11	4
TTATGTATGAATTCCG	ref_5803_new	0	0	0	0	0	0	0	0	0	0
GCTATCCAATGATTAC	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TGTTACCTGCACTCAG	ref_5803_new	23	44	31	15	35	19	63	13	41	14
AGCTCTTGCGCTCCTT	alt_5803_new	8	16	23	11	18	9	14	15	24	9
ATCTTATTCCTCTTCT	ref_5803_new	7	14	16	24	15	13	12	10	13	6
CGTCAGTTTTTGTAAA	ref_5803_new	17	23	26	22	24	10	24	14	38	15
TAGACGTACCAGATTG	ref_5803_new	0	0	0	0	0	0	0	0	0	0
ATCTCCGATCGCCTCT	ref_5803_new	45	65	47	37	73	44	48	26	72	35
GCGAAGTTTCCAAAAC	ref_5803_new	36	67	30	30	79	36	72	22	75	45
TGACGGTCTGGGTTTT	ref_5803_new	59	110	74	62	150	73	137	80	134	81
TCCAAGGCTAAGTCGT	ref_5803_new	1	0	8	1	5	2	5	1	2	0
CTATGCCGTGCCCGGA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
GCCGGTTTGCCCATAG	ref_5803_new	0	4	0	5	1	2	1	1	5	1
GGTGTTCCAAATACTC	ref_5803_new	34	78	39	36	59	45	72	39	92	45
AACTATCTGGGCCTTC	ref_5803_new	33	46	38	24	40	23	35	21	39	28
TCTCTTCCCCCTTCTG	ref_5803_new	0	0	0	0	0	0	0	0	0	0
GAATGTCTTCTCTAAT	ref_5803_new	76	78	81	66	84	73	91	58	78	61
CAGCAGGCCTGCATAT	ref_5803_new	7	1	4	5	4	4	5	3	4	6
CACCCTGGTTATCACA	ref_5803_new	31	68	51	27	60	28	79	22	61	23
GGCTTCATATACACCG	ref_5803_new	42	66	49	27	67	39	75	25	70	26
ACATTGCTCCACTTGT	ref_5803_new	10	13	7	11	18	8	13	7	17	5
ATGTTATTGTCTTCCC	ref_5803_new	6	7	7	7	13	10	11	5	16	11
CACGATTGATTCAGGC	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CGTTTATCGTAACACC	ref_5803_new	3	31	19	9	31	15	24	19	23	13
TGGCGCCATATCCCGA	ref_5803_new	21	25	30	25	28	31	22	28	22	18
GCACCAAGTCGTAAAC	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CCATCCTTTCATCGGA	ref_5803_new	7	14	4	6	5	4	13	3	11	7
GACTGCTATGTTCAGT	ref_5803_new	6	8	5	5	14	3	5	5	9	2
TTGTTATCATTAATTC	ref_5803_new	0	0	0	0	0	0	0	0	0	0
AATCGTTTTAGGGGTT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TTTTCGGTGTTTGTAC	ref_5803_new	18	28	21	13	30	20	38	9	39	17
TTGTAGCCTTGGTGAG	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TCTCGGAAGTAAATTT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CTATGCCGTGCCTGGA	ref_5803_new	10	11	12	11	12	11	15	4	17	5
AATTATTTGTAAAACA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TGCGGCTTTGGGGTTA	ref_5803_new	19	18	27	13	33	20	18	19	44	14
TCATGGTCGTTATTGT	ref_5803_new	7	9	10	10	18	9	23	8	27	8
TTGTTGGATCTACCTA	ref_5803_new	4	33	8	13	27	4	37	5	42	8
AATTCGCTCAACGTCT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TGTATCGTTTTTTCCC	ref_5803_new	20	19	16	29	22	25	30	16	34	25
ATACTGCGCCTCTCGA	ref_5803_new	30	29	29	13	36	19	24	18	37	18
GCTATATCCGCATTTT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
CTCCTTCTGTCCTACT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TGGTGTTCTGACTACT	ref_5803_new	8	13	10	7	13	9	15	9	17	6
GTCTTAACGTGAGCAA	ref_5803_new	3	8	5	11	13	5	8	8	12	5
TAGGGCCGATACTTGC	alt_5803_new	40	84	41	22	124	28	95	22	107	28
TACAGCTCGGCAAACG	alt_5803_new	9	34	21	19	40	17	28	12	32	19
GATCCGGGCATACACA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TTGCTTGACTGCCATT	ref_5803_new	14	29	19	15	34	21	30	15	26	15
TAAGGCCGTTTGGTCT	ref_5803_new	19	25	28	10	15	10	36	10	36	11
TTGGGTCCGAATTACA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
GTGAAACGCTACTCTT	ref_5803_new	0	1	1	0	4	2	2	1	2	1
CTTTATTACTTTTGCA	ref_5803_new	0	0	0	0	0	0	0	0	0	0
AACTCCGCGGCATGCG	ref_5803_new	51	68	43	43	80	51	69	52	76	44
GACCGACCGCCCTGAG	ref_5803_new	0	0	0	0	0	1	2	0	1	0
CGTCCGGCCTCATGAA	ref_5803_new	57	72	68	48	61	53	91	50	86	42
CGCACCTCCCGGTACT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
TTCCCACCCTAACTTG	ref_5803_new	11	16	7	3	20	8	7	8	14	6
AATCCGGTAAGTCAAG	ref_5803_new	63	83	94	73	100	77	115	73	133	54
CCATAATTCCTGTAAG	ref_5803_new	16	30	27	19	60	19	47	21	48	18
TTCCCAGAATTAGGGC	ref_5803_new	2	5	10	1	0	4	5	6	8	4
GTACTTAGGTACTAGA	ref_5803_new	24	54	35	37	45	31	51	23	49	16
TGCTGACTTAAGATTG	ref_5803_new	14	24	12	15	30	12	23	15	27	16
TTAATGATCTGAGTGG	ref_5803_new	23	44	41	33	42	31	37	33	47	32
GTGATCTGCCGTACCC	ref_5803_new	10	17	9	14	23	11	26	11	16	11
CGGCGTTCCGAAAAAC	ref_5803_new	0	0	0	0	0	0	0	0	0	0
ATTAGAACCGCAACCT	ref_5803_new	0	0	0	0	0	0	0	0	0	0
GGTGTGCCTTTACCAT	alt_1610_negative	79	119	110	97	140	86	130	88	152	76
AACCGTAAGCTGAGAG	alt_1610_negative	18	41	35	37	34	27	46	20	29	34
ACCATTTATATTAGCT	alt_1610_negative	24	41	37	29	53	20	38	26	55	25
ATAGGGTCGTCCCTTC	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
GTGACCGGAATCCAAT	alt_1610_negative	1	0	3	7	3	1	2	1	1	4
GATCACTGGTGTCTGG	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
ACAAGGTCTGCCATTT	ref_1610_negative	15	16	16	12	6	10	12	13	19	18
TCAACCTTTCGAGACT	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
CGTATAGTTGAAGATC	alt_1610_negative	17	16	11	9	21	8	15	3	21	14
TCGCATTTAAAAATCC	alt_1610_negative	11	13	15	16	16	11	12	13	15	21
GCGCCTATCTGATCCT	alt_1610_negative	24	22	27	15	36	26	28	24	35	16
AGCGGTTCTATGGATT	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
ATCTTGACCGGCTCTG	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
TAGACAATGGTCGTCA	alt_1610_negative	24	24	38	14	20	15	27	17	25	16
GCTCGGAATGAAATCG	alt_1610_negative	42	73	48	56	76	50	56	43	78	38
GACCTATACCCGCGCT	alt_1610_negative	12	16	4	12	5	11	21	10	7	10
GCCCTCCACGGAATGA	alt_1610_negative	4	12	7	7	5	9	9	5	6	7
GGGATCATCATCGGTT	alt_1610_negative	18	11	16	19	19	25	21	10	24	17
ACAGAGCATTCCTATA	alt_1610_negative	65	82	73	57	87	50	81	63	86	50
TATTTGGCCCCTCTAG	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
TGTTATCGACCGTGCG	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
GTTCCGGAATATATGG	alt_1610_negative	37	43	34	33	50	29	59	32	50	34
TCGCCCCACGCTTGCT	alt_1610_negative	36	26	44	25	40	36	42	34	38	33
GAAGAAGGGAGCTGTA	alt_1610_negative	23	34	26	33	25	24	26	13	34	15
TGCTCCAGTTATCGCC	alt_1610_negative	49	74	64	38	69	54	66	54	79	54
CTATGAAATATAACCC	alt_1610_negative	4	1	4	1	4	3	6	1	3	6
AGTGTGAGACCATTTA	alt_1610_negative	13	24	28	9	17	13	20	11	32	19
TAGGCCCAGCCTGTTG	alt_1610_negative	6	6	4	7	7	4	6	6	2	1
TGCACTTCGAAAACGA	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
TATTGCATAATAACCC	alt_1610_negative	6	7	17	8	8	9	11	7	14	8
ATCTCGCCGAACATAT	alt_1610_negative	4	9	6	7	4	1	5	2	7	3
GGGGCATTTCGATCTG	alt_1610_negative	22	24	22	14	25	14	35	16	25	18
TTTTTGAGCAACCCGT	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
CAAGTCGGCGCTCGGG	alt_1610_negative	7	6	12	7	10	12	8	8	6	6
TTGACCTCCTTGGGAT	alt_1610_negative	24	27	26	15	27	26	29	21	21	25
GTATTTATGTGTTTTA	alt_1610_negative	4	1	3	6	5	2	7	0	1	5
CAACGCCTGCATGTCG	alt_1610_negative	10	11	15	16	16	4	11	7	15	6
CATTATATATGTCTTC	ref_1610_negative	39	50	40	35	57	41	50	46	47	35
GGCCAGACATGGTTGC	alt_1610_negative	8	6	8	8	11	6	7	11	8	5
CTTGAACGGCTTCTTG	alt_1610_negative	5	14	15	15	12	10	11	8	13	5
GGTCGGTCCCCACGGT	alt_1610_negative	2	2	3	1	1	1	11	4	3	2
TTCGCACTTCATCCCC	alt_1610_negative	15	29	16	7	48	9	33	13	37	7
ACTCTTGGTTGCGGTT	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
TGGCTTTCTGAGGGCA	alt_1610_negative	30	32	25	11	17	22	29	12	25	15
TCCGGACTTCTGCCCT	alt_1610_negative	27	29	40	34	34	33	36	21	39	23
TTTCCCGTGCTCTAAG	alt_1610_negative	6	8	9	1	9	3	4	9	10	10
TTGGACCTTACTTCGA	alt_1610_negative	2	6	7	3	3	2	8	5	1	6
ACTCCTAGCCGTTTGA	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
TCAGTCGTATATTTTT	alt_1610_negative	0	1	2	1	3	2	1	0	5	1
TCGCAATCTATAGTCT	alt_1610_negative	20	33	32	33	43	19	45	39	51	16
AAGACCTTCCGTGTGT	alt_1610_negative	6	18	9	9	11	7	16	13	18	4
GTTATTGATTCGCTGT	alt_1610_negative	52	59	39	53	68	48	58	57	47	49
CGATATCGCGAGTATA	alt_1610_negative	105	105	134	106	99	106	108	82	107	73
GCCGAAGAAGATTCAA	alt_1610_negative	85	118	95	78	130	112	144	86	136	88
GACATCCGGGTCTCCT	alt_1610_negative	21	23	32	11	18	25	14	19	31	18
CAGTACATTTAGGTAG	alt_1610_negative	91	89	88	74	113	66	114	70	105	78
GGAAATCAGAGAAGGC	alt_1610_negative	42	63	60	51	58	39	83	34	56	40
TTATTCGAGACCTGCA	alt_1610_negative	15	18	20	19	19	14	15	10	15	8
TTTTGCGCTCTACATT	alt_1610_negative	67	111	89	75	65	68	124	49	96	71
CCAGCACGTCTGGGCG	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
CGACAGTCCGTGCTGT	alt_1610_negative	3	7	5	0	5	7	2	0	6	3
ATTAAGACGCTAGGGT	alt_1610_negative	29	49	30	31	46	28	59	20	42	20
TGTAGCTACCGTGATC	alt_1610_negative	0	3	3	8	12	3	5	2	9	4
TGTCTTCGGCCGCTAT	alt_1610_negative	0	0	0	0	0	0	0	0	0	0
TCTATTCGGCGTTCTG	alt_1610_negative	7	28	14	11	19	7	33	10	21	12
ATTCTAGCTTGGCTTG	alt_1610_negative	8	14	19	19	32	17	20	18	20	6
CATTTTGTCCTTTGTC	alt_1610_negative	56	58	66	46	44	51	68	35	60	47
CATTGTGCAAAGACAA	alt_1610_negative	8	4	4	2	3	5	8	5	9	6
CATAGTGTTCCTTGTA	alt_1610_negative	43	77	49	57	85	45	94	39	86	37
TGTAATCGGTTTTGTA	alt_1610_negative	86	112	110	75	102	94	105	83	130	78
CACGCAGCTTTTCCTT	alt_1610_negative	63	46	88	83	46	64	62	51	50	73
GGTAACATTGTGCTGG	alt_1610_negative	33	45	42	32	62	32	47	29	48	39
ACGCTTATCGCTATTA	alt_1610_negative	15	21	24	23	21	15	29	17	22	18
CTCGGCGCGCATTTAC	alt_1610_negative	32	45	24	27	44	17	36	23	30	27
AGGTTGGTACTCAATG	alt_1610_negative	21	33	31	27	31	22	50	31	49	30
CCCGGCTTTGATTCTG	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TTTCAGTGGGCTTAAA	ref_3594_fdr	25	23	35	27	32	13	37	24	35	27
CGTGAATCGTATGGTA	ref_3594_fdr	13	14	16	9	15	18	10	13	10	5
AACTCGGGATGGATAG	ref_3594_fdr	3	0	2	0	2	0	5	0	6	2
GGAGCACCGACTCGGT	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TACTCTAGCTCCGTAT	ref_3594_fdr	53	53	57	40	57	44	75	56	84	42
TGTCTATTTTACTGAG	ref_3594_fdr	145	171	144	105	165	118	176	113	182	101
AGGCGGCTCTAAGTTT	ref_3594_fdr	3	4	6	5	4	1	6	0	4	8
ATAATCGATTTAGGAT	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
GGCCACTTAAATTTGA	ref_3594_fdr	18	25	23	9	30	15	29	16	26	14
TGATTCACGGGCGGTG	ref_3594_fdr	9	4	15	7	7	7	12	10	6	6
GCCTGTGTTAGCCAGT	ref_3594_fdr	76	105	87	59	129	77	91	81	115	65
CGCAGTTTGATTTATT	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
GACTGTCCGGGCGAAT	ref_3594_fdr	16	11	14	13	27	11	14	16	22	10
CGGAATTGGATGTCGT	ref_3594_fdr	19	21	22	22	21	22	17	20	24	22
ATCTCTGTCCTGGGTA	ref_3594_fdr	9	12	15	7	5	5	6	4	8	13
CTTGGACGATGCTCAC	ref_3594_fdr	17	28	18	16	30	24	27	12	24	11
TTCTAGACCACCGCTG	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTATAATCTTTGT	ref_3594_fdr	208	157	236	173	155	184	192	132	184	196
GATGATTGGATTGTGT	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
GAATACTCGCCGCATA	ref_3594_fdr	20	31	26	21	35	19	31	17	31	19
CGGAAATCCGGCGGGG	ref_3594_fdr	14	10	17	7	16	12	26	10	12	13
CCCAGAATCACTCACA	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATATCTCATATCCATT	alt_3594_fdr	1	1	1	1	1	2	0	0	1	0
AGTTGCAGTGTATGAG	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTAAACAGTCTT	alt_3594_fdr	110	80	73	74	94	75	100	54	103	60
TATTGGCATAGGAGCC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
CGATCACATTGTTGCT	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
GCGATTAGGTTGTCGT	ref_3594_fdr	55	46	51	38	61	51	63	40	46	60
CTATAATTTAACTTCC	ref_3594_fdr	4	6	3	6	2	4	2	2	3	7
AAACCTCGGTCTTGCT	ref_3594_fdr	19	20	13	23	15	21	34	15	15	27
TTAAGGTATTTCCTGT	ref_3594_fdr	49	40	36	36	29	44	57	34	47	26
CGCCCGCTTGCAAGTG	ref_3594_fdr	287	257	274	247	287	242	322	231	313	230
AGGCAGCGACATATGC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TTCTATCAGCTTTTGA	ref_3594_fdr	7	18	2	6	9	12	9	10	13	9
GTACCTACCGGGGCAG	ref_3594_fdr	80	113	80	47	129	49	147	57	139	54
CCTTGGCTCGGTTGCT	ref_3594_fdr	35	31	32	20	45	39	41	20	38	19
CTTCATGCGTTCTTCG	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
AAACCCCGTGGACATT	ref_3594_fdr	20	54	39	28	52	15	50	29	43	15
TGAGACCGGGTGGCAG	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGTAGCACTCGTT	ref_3594_fdr	4	6	5	2	4	2	3	3	4	3
GCTGGGTATAGCGAGC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TCGTAAAAACTTCGTA	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCAGTCTGTCATT	ref_3594_fdr	31	88	50	39	82	26	114	29	99	38
TTTGGTAGACTACATT	ref_3594_fdr	14	16	16	17	18	11	20	11	16	18
CATATTGGGCGTACCC	ref_3594_fdr	12	12	18	11	13	13	9	8	15	9
CTTCGTCTTCCAAGAT	ref_3594_fdr	84	87	97	67	87	69	103	99	91	98
GCGCTCATACAGGGGA	ref_3594_fdr	62	58	82	52	71	47	64	56	66	59
ACAAGATTCTGCCAGC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATCATCACACGAGCCC	ref_3594_fdr	207	227	264	193	203	190	196	198	224	199
ATAGTGATCTCCGCGT	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TGGTACGTAGCCGAGG	ref_3594_fdr	109	131	124	119	127	111	158	114	128	97
TTGCTTAAGACCTTTG	ref_3594_fdr	7	4	4	0	8	6	7	5	8	2
GCTCCCCTGTTTGGCC	ref_3594_fdr	9	41	11	17	45	9	47	7	48	7
CGTCCGGAGGTGTTAA	ref_3594_fdr	4	5	2	4	8	1	7	3	3	2
TGTGATTAGTTTAGTC	ref_3594_fdr	62	58	68	55	98	58	62	46	82	54
GAGACGGGGTTCACAC	alt_3594_fdr	143	148	192	132	132	112	134	112	144	107
CCGACGGAATCTGTAT	ref_3594_fdr	8	8	10	6	8	5	16	8	16	6
CCATAAAACCCCTTTT	ref_3594_fdr	4	8	3	2	8	2	6	0	3	3
AATACTGTGCTGCAGG	ref_3594_fdr	110	108	116	88	134	84	98	95	116	93
TTATTGCCCTCACGGG	ref_3594_fdr	57	44	67	31	49	47	63	46	53	40
CGGTCTGGTTGTATTT	ref_3594_fdr	55	52	64	40	64	58	80	51	76	66
CTGTTAATATCAAAAG	ref_3594_fdr	22	26	27	20	33	13	17	13	15	24
CTTTCGCCGTCCTCTC	ref_3594_fdr	7	6	6	5	7	4	13	9	6	0
CCATTTTCTTTACTCT	ref_3594_fdr	5	5	3	3	6	3	9	12	10	2
AGGTCCGCCTACGCAA	ref_3594_fdr	22	34	19	17	25	26	21	16	26	13
AACACTCATAAAACGT	alt_3594_fdr	31	46	38	36	34	34	41	21	52	25
AGATCCTAGTCGTTGA	ref_3594_fdr	22	25	22	17	29	19	27	23	36	21
GCGTCTTCTTGCCTCT	ref_3594_fdr	24	17	38	28	16	24	25	18	22	22
TGCCTAACGACTCGGT	ref_3594_fdr	74	95	100	48	92	62	105	53	94	65
GAGTACGATTCATGTA	ref_3594_fdr	31	24	29	25	31	25	28	27	30	24
ATGTACCGGGTATGGC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTGTTTAGCCTA	ref_3594_fdr	68	70	86	59	67	60	98	54	72	72
ATGAATTTAATGTCGT	ref_3594_fdr	232	203	296	200	224	226	224	176	226	172
TATGGGGGTCGATGCT	ref_3594_fdr	50	44	44	41	50	31	42	35	46	36
TGATATGTCACACGGC	ref_3594_fdr	50	44	63	37	60	39	53	37	66	46
CCCCACGAGTATTGCG	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
CATCGTTATTAAAGGA	ref_3594_fdr	42	31	37	23	34	26	34	41	43	32
GGGTTACCTCAAAGCA	ref_3594_fdr	511	670	637	490	661	483	654	465	602	445
CGGTTTAGTTACCTTT	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTTGGGGGGCCTC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATTATGAGGTTTATGG	ref_3594_fdr	17	32	22	15	24	22	33	16	33	19
GTCTGTCTACGGGAAT	ref_3594_fdr	14	25	25	12	20	17	24	16	27	17
ATAGACTATTGATTCG	ref_3594_fdr	84	132	102	101	130	86	143	85	141	81
TAACATCTTTTGTCCT	ref_3594_fdr	102	81	97	82	108	81	97	80	83	84
TTGGGGGTGCTTGTTT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCGTTTTGGCGCG	ref_3594_fdr	7	8	11	9	6	5	15	5	14	5
TATCGCTGTATGGTAT	ref_3594_fdr	11	15	12	10	11	12	15	9	9	9
CGTGCTACATTGAGGT	ref_3594_fdr	23	20	17	21	14	13	17	14	25	10
TTCACTGCGAGTACTT	ref_3594_fdr	35	27	34	22	28	20	34	15	30	28
CTAACCTTGCGGCTTT	ref_3594_fdr	20	25	17	12	24	15	26	12	30	15
TCAGCTTACGGTTAGC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
CTTATTATCTGTACAC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATATCGTACTGACTCA	ref_3594_fdr	18	31	26	15	25	13	29	14	32	20
TGAAATACTTCCAGAA	ref_3594_fdr	67	61	71	57	61	61	69	64	60	49
CATATGATTTTACTAA	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TCAGATCCTTACGATG	ref_3594_fdr	135	151	148	90	165	113	191	125	144	121
CTCTTGGCAATTACTT	ref_3594_fdr	39	72	49	52	82	31	62	43	66	43
TTCATGACTCTTAGCC	ref_3594_fdr	1	1	0	0	0	1	0	0	0	0
CGTAGTAGGTGGGTCT	ref_3594_fdr	39	36	31	27	31	38	34	26	30	23
GTGCAATTGGAGAGGG	ref_3594_fdr	17	24	21	17	28	13	18	13	28	16
GTTCCTTGGTTGTCTG	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TAGGAGTGCACATTTC	ref_3594_fdr	140	170	190	134	195	140	190	149	184	145
GCCCCCATCTACTCCT	ref_3594_fdr	28	64	52	46	56	44	74	30	51	27
CCTCATACCTTAGTAT	ref_3594_fdr	6	18	9	6	16	14	13	6	25	12
ACAGTGTCCGGACTAA	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TCATGATTACGAGGGG	ref_3594_fdr	27	25	30	35	33	20	46	35	33	21
TATCATCCTAATATAG	ref_3594_fdr	13	17	12	12	20	14	14	23	15	12
GCGTTCCTTTTGATGC	ref_3594_fdr	0	0	0	0	0	0	0	0	0	0
TGACGCTCCCACGCTG	ref_3594_fdr	27	37	23	18	32	18	40	17	35	22
GATTTTCTCTTTAAAT	ref_5677_new	27	31	52	39	24	35	36	37	24	36
GGGGGGGAAAATAGTC	ref_5677_new	60	68	63	55	64	57	63	63	46	57
GAGTACCAGTTACGGG	ref_5677_new	0	0	0	1	1	0	1	0	0	0
AGATTCACTCCTGTGA	ref_5677_new	0	0	0	0	0	0	0	0	0	0
TCACGGAAGGAGCCGC	ref_5677_new	22	29	35	35	23	29	15	31	26	14
GTCATTCGAAGTTAAC	ref_5677_new	39	25	43	33	32	35	35	27	25	25
CGTGGGCATCCGTAAT	ref_5677_new	54	54	67	50	78	63	81	48	67	46
GCCCCACGATTAGTAC	ref_5677_new	51	47	52	50	44	47	60	37	59	36
TTTCTTAGTGTGCCAG	ref_5677_new	82	59	82	85	69	77	67	68	87	57
TTCGGCCAACCCGGCG	ref_5677_new	40	44	49	38	42	30	47	20	62	37
TTTTGATCCTCAGTAG	ref_5677_new	24	20	29	19	18	24	23	17	21	24
ATCGAGAACATCGAAG	ref_5677_new	1	1	0	0	1	1	2	0	0	0
CGTTCCGGCAGTATAC	ref_5677_new	129	108	167	138	134	118	137	111	181	98
CCGCACTTAATTCGCG	ref_5677_new	28	27	26	20	33	12	29	19	31	16
TTGTCGCGGCATACTG	ref_5677_new	0	0	0	0	0	0	0	0	0	0
ATTTAGTGGGCATGCT	ref_5677_new	219	198	279	196	221	200	217	211	208	192
CATCTTTCCGTATCGT	ref_5677_new	0	0	0	0	0	0	0	0	0	0
TCCCGGCGTGCCCACT	ref_5677_new	19	17	15	17	18	15	15	11	15	18
TTCGATACGCTTTCAT	ref_5677_new	40	41	52	33	41	23	45	39	29	29
CACAGTATACGGGTGG	ref_5677_new	11	12	11	14	14	8	20	8	14	7
TGCGTGAGATTAATCG	ref_5677_new	15	15	18	11	12	8	12	11	14	6
CTATTTGTACTTCGGG	ref_5677_new	46	29	52	48	33	27	32	32	48	38
AACACGTTCTCCCCCT	ref_5677_new	11	8	22	17	8	17	13	15	23	14
GTTGATGGGATCGGTG	ref_5677_new	0	0	0	0	0	0	0	0	0	0
TTTACTTAATGACATC	ref_5677_new	49	43	66	42	47	40	60	48	50	54
TCGTCAAGGTTCTGCC	ref_5677_new	13	27	10	12	12	14	10	7	9	2
CTTAGTGTGGCGTCCC	ref_5677_new	29	15	22	25	22	24	16	23	20	20
ATTATTCGTTCTCCCT	ref_5677_new	17	54	22	21	54	17	85	24	63	26
CAACGATCCTATAGTC	ref_5677_new	2	5	10	2	6	10	8	3	7	1
AAGTGTCACGCCAAGG	ref_5677_new	6	5	2	9	6	3	11	2	9	3
GCCACGTGCGCTGGTT	ref_5677_new	9	16	6	7	17	3	11	10	19	6
CCACTTTCATAGTGGA	ref_5677_new	54	36	55	41	40	42	55	37	45	28
TAGGTCGTTGTTAACG	ref_5677_new	66	77	92	63	77	69	91	63	69	66
CATACTGGCCCATTTA	ref_5677_new	20	8	19	17	7	15	12	13	18	12
GATTTACTGAACAGAA	ref_5677_new	0	0	0	0	0	0	0	0	0	0
ATGGCCGATGGCGACC	ref_5677_new	173	150	219	196	167	176	157	165	182	187
GCATTGACGACCGAGG	ref_5677_new	86	82	118	98	94	91	80	79	99	107
GTTTTTGTAAAATGGC	ref_5677_new	76	55	109	76	37	76	61	79	67	87
TGTCCGCGGTGACGCT	ref_5677_new	71	57	69	54	37	55	55	39	51	52
ATCAGCAGCAACTGCG	ref_5677_new	0	0	0	0	0	0	0	0	0	0
CAATCCCACTTGTTTC	ref_5677_new	14	7	13	13	7	7	7	8	10	11
TTTGGCCATACTGTGG	ref_5677_new	35	30	43	37	42	45	38	24	44	56
GTCGCTTGTTCTTTCT	ref_5677_new	23	30	26	19	26	29	29	17	22	16
TTTAGCGGGCATCGGA	ref_5677_new	50	43	53	53	56	49	49	56	56	44
ACCGCTCACTCCACCC	ref_5677_new	77	88	107	85	89	96	96	86	97	84
TTCACCGCGTCAACGT	ref_5677_new	33	70	47	34	64	38	75	24	67	30
AACCTCGTCAATAGCG	ref_5677_new	81	68	91	79	99	97	110	93	72	82
TGGTGGCCCGCAAGGC	ref_5677_new	7	8	7	5	6	7	10	7	8	5
CGTATATACAATCTTC	ref_5677_new	67	76	101	84	83	86	69	68	85	75
TCATCCATCCACGGCA	ref_5677_new	144	163	163	175	170	129	209	171	180	151
GGTGGTGGTTAAGTGG	ref_5677_new	32	34	49	41	43	43	43	29	34	36
GGACTCATTTCTATCG	ref_5677_new	77	81	75	84	96	69	89	66	70	74
GTCATAGCTAGATAGT	ref_5677_new	0	0	0	0	0	0	0	0	0	0
GCTACGGACGCAACCT	ref_5677_new	26	31	32	28	34	20	45	38	48	32
AATCTCGGCGTGTTGG	ref_5677_new	124	120	174	168	135	131	134	147	137	118
CTACGATAAGGTTATA	ref_5677_new	34	36	39	54	36	46	37	36	40	33
TCACAATATTGCTGGG	ref_5677_new	15	19	21	42	29	21	23	23	18	26
TGACGTTGGGCTGCAT	alt_5677_new	71	43	81	56	54	59	71	45	61	47
TTCGGGACAGTCAATA	ref_5677_new	107	145	142	110	138	108	150	112	148	104
CACGACTTTTCTCGTT	ref_5677_new	29	21	39	35	34	24	35	48	37	23
CAGTACGGTATACTGT	ref_5677_new	11	7	7	13	4	7	7	9	7	2
CCATCTGACTTTAAGT	ref_5677_new	82	103	90	83	88	95	67	71	86	53
AACTCGTTTCATAGCT	ref_5677_new	11	13	17	17	23	8	8	8	16	7
TTATCAGCGATTTCGA	ref_5677_new	0	0	0	0	0	0	0	0	0	0
GCCGCGCCTCGCTGCA	ref_5677_new	4	3	7	1	4	1	4	3	3	2
TATTTGCCTCTTTTAG	ref_5677_new	25	22	17	29	15	17	11	22	10	21
CGACCTACCGTCTAAG	ref_5677_new	39	70	44	46	85	39	89	38	84	38
TGTTTGTCTCTAGTCC	ref_5677_new	21	15	18	20	15	18	18	12	20	15
TAATATTGGACATTGA	ref_5677_new	32	35	53	45	33	35	45	39	52	38
ACGCAATTGAGCTTAC	alt_5677_new	10	12	13	11	16	14	5	11	16	14
GGTCGCGATCTTCACC	ref_5677_new	57	46	68	73	61	63	51	48	52	56
ATTGGTCGTACAGCTT	ref_5677_new	0	0	0	0	0	0	0	0	0	0
TCGGACAGCCAATCGA	ref_5677_new	24	25	41	19	29	15	27	20	25	11
ACAGTAAGCAGTGGCG	ref_5677_new	21	21	17	19	11	11	16	15	29	19
GCGCATGTATGTAATC	ref_5677_new	0	0	0	0	0	1	0	0	0	0
TCCGGGTCCCTTGCTT	ref_5677_new	0	0	0	0	0	0	0	0	0	0
TATGCACTGTGACGTA	ref_5677_new	21	28	27	23	19	24	18	23	23	20
ATAGCCGCAGCGCAAA	ref_5677_new	42	28	38	21	27	29	42	30	36	21
CGAAGTGTTCTCTTAG	ref_5677_new	14	12	14	13	9	13	11	2	13	13
CCCCTACTGGTCTCGT	ref_5677_new	5	9	4	3	7	4	10	7	12	5
TCATATTGGTTTGAAT	ref_5677_new	36	21	52	49	41	32	37	38	34	16
CGATCTCTTGGTATCG	ref_5677_new	8	3	6	4	4	3	7	10	10	4
CGTCCACTACAATGTG	ref_5677_new	21	19	33	24	19	28	26	31	23	27
AAGCATAAATAGCCGC	ref_5677_new	49	76	72	71	95	65	51	57	77	57
GTCTTGACCATACCGT	alt_5677_new	30	38	44	37	40	25	39	46	45	42
CAGGATAGCGTTTGAA	ref_5677_new	45	61	59	50	73	53	61	46	69	52
GTCGTCGATATATATA	ref_5677_new	0	0	0	0	0	0	0	0	0	0
GAACTCGTAGTTTTAA	ref_5677_new	0	0	0	0	0	0	0	0	0	0
TATGTGTAAGTCGGAA	ref_5677_new	0	0	0	0	0	0	0	0	0	0
AATTTGGTGTTTGTAT	ref_5677_new	0	0	0	0	0	0	0	0	0	0
ACCTCATTTTAGGCGC	ref_5677_new	22	22	16	21	22	21	17	21	24	22
CGCTTTCACACTTCAG	ref_5677_new	26	27	30	55	32	23	37	34	24	30
GGCGGTTAGCGATCCT	ref_5677_new	13	16	15	21	12	9	19	15	18	7
CATTCGGAACCGAACC	ref_5677_new	0	0	0	0	0	0	0	0	0	0
CATATTGGTTACCCGA	ref_5677_new	14	22	35	19	37	24	22	22	24	21
CAACGTGTACACTTCC	ref_5677_new	2	1	2	3	2	0	1	0	1	2
AGGACGCTTATTTGTA	ref_5677_new	0	0	0	0	0	0	0	0	0	0
GGGAGTGTCTTTCCCG	ref_5677_new	153	156	190	152	217	183	161	180	197	156
ACGTGATGGCCGATAG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TCTCACTGCCAGCGAC	alt_3416_reverse	51	31	65	57	35	59	47	35	44	46
TGCATCTCTGGTGGTA	alt_3416_reverse	82	63	108	78	69	69	52	72	81	65
GTAGGACACGCCCACC	alt_3416_reverse	75	63	64	58	71	59	71	52	67	51
TTTATTTCTCAACAGC	alt_3416_reverse	95	93	126	94	92	84	80	109	116	115
GTCTGATTTTTGCGTA	alt_3416_reverse	167	148	252	146	156	170	155	157	160	174
GCTCTGCCGTGGTTAG	alt_3416_reverse	10	8	12	12	14	12	12	10	11	6
CGTCTCCCAACGGCTT	alt_3416_reverse	18	16	16	10	19	12	10	12	15	18
ATCGACTTCAACCTTT	alt_3416_reverse	33	37	29	28	37	29	31	32	24	34
CTTGATTTAGTTCCTT	alt_3416_reverse	11	13	17	6	26	17	16	14	18	22
TATACAAATAGTACAA	alt_3416_reverse	32	22	25	20	14	19	17	17	21	12
AAACACTTACTGGGGT	alt_3416_reverse	19	11	16	18	12	19	16	16	9	10
TGTATGTCGTATTTTC	alt_3416_reverse	37	31	48	35	29	39	34	39	41	44
ATGACCCTTAATACGT	ref_3416_reverse	33	14	37	21	21	27	19	32	30	12
TTTGCAGTATATTTAG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTTCAGTACCGGG	alt_3416_reverse	10	2	10	5	5	7	2	6	7	12
ACACATATATGGCTAG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGTTGTCCATAGG	alt_3416_reverse	51	72	70	69	48	79	47	50	61	68
GCCTCCTCACGCGCGA	alt_3416_reverse	40	33	45	33	24	22	33	37	30	30
TATTATCTGGTTTTCC	alt_3416_reverse	5	0	2	8	5	5	1	5	6	2
GTCTCCGTCTAGAACA	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
AGGAAGTCCGCGACGC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTATGTTGATCTATCA	alt_3416_reverse	91	61	112	98	67	69	79	75	68	83
GATTTATAGTTGGCGA	alt_3416_reverse	474	301	549	412	335	465	336	393	373	412
TTGGCAGGCACGTCAG	alt_3416_reverse	14	21	27	24	24	26	20	21	18	15
GTAAGAGAATAACCGC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGAAGAAATGAGT	alt_3416_reverse	37	29	42	27	23	33	22	29	35	31
GATATCAAGCAGATTT	alt_3416_reverse	55	32	67	37	33	55	42	44	46	50
CGTTTTTAAATTACAT	alt_3416_reverse	39	35	35	29	21	39	34	23	32	28
CGTGCCTCAGAACTTT	ref_3416_reverse	180	137	230	200	164	175	172	190	154	152
GCCTTTCACTATCTCC	alt_3416_reverse	209	156	237	195	186	174	215	175	205	159
TAAATGTTAGTCTCTA	alt_3416_reverse	1	1	2	3	0	2	1	3	3	0
TTCAACGTAGTCCGAT	alt_3416_reverse	21	31	30	22	28	24	32	13	29	26
ACTTCTGTCTATGCGT	alt_3416_reverse	31	24	41	41	33	27	46	49	36	28
ATCTGATTTCCGCCTA	alt_3416_reverse	29	14	27	18	21	17	15	26	15	19
CCATCCATCACTCTGT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
AAGGAACCATGGATCG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTAGTGTTGCCCA	alt_3416_reverse	24	33	40	21	41	25	26	27	31	32
GCCGAGGCTTTCTTAT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CCAACTCGGGCCAGCC	alt_3416_reverse	65	44	71	70	45	66	53	68	49	49
CGCGCCCAAAGCCCAT	alt_3416_reverse	12	21	15	24	16	24	16	18	29	13
GATCAACTTTGGATAT	alt_3416_reverse	24	14	26	22	27	29	31	28	19	13
ATTAGTTGCCTCAAGT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCTAATTGAGTCT	alt_3416_reverse	11	13	9	5	10	9	23	6	16	15
AATCTGTTAACGTTGC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TAGCAAACTGGTAGCG	alt_3416_reverse	55	40	45	45	48	48	50	53	44	52
CGCTACACGGTTTTTG	alt_3416_reverse	19	26	17	16	12	12	23	18	16	7
CCCCATATTTAGCATT	alt_3416_reverse	181	146	238	215	171	164	153	176	157	188
ACCGTCTGAAGCTGTA	alt_3416_reverse	4	5	10	7	11	7	8	5	6	5
CATCGAATCATCTGCT	alt_3416_reverse	40	25	44	30	42	48	38	46	44	35
CATGGCAGCCGAAATG	alt_3416_reverse	3	6	5	2	6	2	5	5	2	2
CAACCCGACCTTGGGT	alt_3416_reverse	8	8	9	10	12	6	15	12	5	6
GTATCTCTACTTAACC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCTTTCTAGGTGG	alt_3416_reverse	78	73	67	61	109	75	96	48	83	56
CGTCCCGGCTTCGGTG	alt_3416_reverse	14	23	26	23	31	20	11	19	13	16
GGGCTTACACCATGAC	alt_3416_reverse	31	17	44	31	33	35	28	36	31	26
TTGGTCCCTATTGGGG	alt_3416_reverse	44	42	54	43	47	48	49	44	56	42
GGTTTGATTGGAGGAA	alt_3416_reverse	57	40	99	67	63	69	42	70	58	73
GCCGCGGTATAAAATT	alt_3416_reverse	23	35	47	27	35	36	34	26	35	31
GACGAGGCATAAAATG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
AGCATACTATCTCTAT	alt_3416_reverse	59	39	76	56	43	72	43	59	48	51
TATACGAGACAAGAGT	alt_3416_reverse	9	9	19	15	11	13	14	13	16	12
GTGCAAGATGCAAGGT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CATGTGGATTATCTAG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TGTAAGTGTATTGCAG	alt_3416_reverse	35	28	34	29	19	35	28	34	34	23
GCCACGAGAAATGTAT	alt_3416_reverse	86	83	123	90	97	97	100	94	77	83
CTCCTTGGTCTAAATT	alt_3416_reverse	33	27	28	52	40	40	34	40	50	26
TTATTATGTTATCTTA	alt_3416_reverse	32	23	37	17	13	23	22	24	26	21
GTATAGCCGTTGGCGT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTCCGCCTTCATC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTATACCTCACCAGTG	alt_3416_reverse	121	96	112	97	100	109	94	110	97	74
GCTCACATTGAAATAT	alt_3416_reverse	17	12	16	20	12	21	10	15	9	20
CGTTTTCAGCATACAA	alt_3416_reverse	5	6	5	3	7	4	11	8	9	8
GGGCTTATCGCCAATA	alt_3416_reverse	12	9	25	27	22	16	19	10	18	23
AGTTTTCTTTGCGGTA	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTCAGTCGGGTCC	alt_3416_reverse	6	9	6	3	8	7	3	3	10	7
CGTCCCAGACCGATCC	alt_3416_reverse	23	11	19	18	22	17	12	18	14	20
CTTACACATATTATTC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCGCGCACTCGCA	alt_3416_reverse	80	74	96	89	62	81	52	73	71	77
TAGTGTCCGTCTGTAT	alt_3416_reverse	14	13	14	17	9	16	3	4	8	4
TAAAGACATTGTTTCT	alt_3416_reverse	33	29	54	44	24	35	25	44	32	43
ACCATTTCTTTCTGCA	ref_3416_reverse	100	186	136	137	167	118	235	115	219	94
TGGTATGACCGAGGCA	alt_3416_reverse	7	6	8	6	11	10	5	7	6	10
GATTCAATACGTGCAT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTTTAAGGGAGGT	alt_3416_reverse	21	12	14	22	5	15	24	12	31	21
TGATGCGTTTAAAGGT	alt_3416_reverse	17	10	9	15	16	12	10	13	18	16
AACGTTAAGCTGTTGG	alt_3416_reverse	69	49	73	55	55	73	46	52	74	53
TCAGATTAACGTCATG	alt_3416_reverse	26	22	18	18	24	23	21	28	23	18
CCCCACTTGCATCAGC	alt_3416_reverse	11	3	14	7	6	14	14	14	7	9
GGCTAGGGTCGATATA	alt_3416_reverse	116	100	127	113	118	85	114	108	107	119
TTCTTTTTAAGTGATG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCATTCAATGCTT	alt_3416_reverse	15	10	19	18	12	16	15	19	19	13
CAAGCTCTTCCTCGTC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCACTTTCCGCCG	alt_3416_reverse	8	5	8	7	8	6	9	9	15	9
TGGTGGCCTCAGTCTG	alt_3416_reverse	234	221	299	251	225	250	191	232	227	248
TACGGCTACGGCTCGT	alt_3416_reverse	53	32	55	46	34	39	40	44	35	50
TAGCCGCACGGTCATC	alt_3416_reverse	167	183	222	186	163	137	156	174	177	201
CAATTGCGCAATTACG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCCTGCATCTGAC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CAATGCCTTAGTAGCG	alt_3416_reverse	52	60	58	54	59	45	66	46	68	50
TTTTGAACCCAGCCTT	alt_3416_reverse	17	12	25	16	15	18	13	20	17	16
GTTCTTTTAAGCTCCT	alt_3416_reverse	16	8	10	18	9	12	7	11	9	8
ATGCATCGGTCCGTGG	alt_3416_reverse	6	6	10	7	8	3	6	9	5	7
TCACCAGGGCGTGTGC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
ATTACTTATGGGAAAC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTTAAGTCCAAATATT	alt_3416_reverse	0	2	4	0	0	1	2	2	5	2
ATCGTGCACAAGCGGC	alt_3416_reverse	22	22	26	20	14	26	18	17	24	21
AAAGGATTGTTGTCTG	alt_3416_reverse	43	37	52	34	34	40	38	33	38	35
CGGATGGTGAACCAGC	alt_3416_reverse	36	32	46	42	37	45	25	38	26	35
CTCTCTTCGGGGTTCA	alt_3416_reverse	30	27	52	35	29	36	24	42	32	20
ATTTTATATAAGCTTA	alt_3416_reverse	95	65	122	120	65	90	74	65	66	65
TCAGGGTATCAAGTCT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTTCCTCGTGTCG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TACAGACCATTTGCCC	alt_3416_reverse	24	34	36	32	23	23	32	30	38	21
TTCAGCTGGTAACACG	alt_3416_reverse	33	46	42	40	44	47	52	39	68	35
ATGTAATGCCGACCAC	alt_3416_reverse	52	48	57	64	54	52	46	59	49	47
CATGAGTGTTTCCATT	alt_3416_reverse	85	114	122	130	117	124	154	111	109	98
GTTCAGTCGAAAATTC	alt_3416_reverse	112	62	118	104	77	94	67	90	86	94
AAACCCCGTGTTGGTG	alt_3416_reverse	58	46	43	51	28	46	67	51	42	41
GGCCGGACCCATTGCT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GGATTCTCGCACGAAG	alt_3416_reverse	32	28	39	30	38	30	23	29	40	38
TTATTTTGTTTCCCTT	alt_3416_reverse	39	43	57	33	24	61	34	32	40	33
TCGATCTGTCCGCTTA	alt_3416_reverse	9	19	20	11	19	17	31	5	28	8
TGACCTCTTATGTCCA	alt_3416_reverse	3	2	2	0	2	4	5	4	1	4
CCGGCCTGCAGTAGTC	alt_3416_reverse	12	18	14	17	18	15	21	16	23	25
CCCTCAACCACCGAGC	ref_3416_reverse	100	83	122	101	76	85	107	66	108	97
TTCTGTCTTCCCTTGT	alt_3416_reverse	52	29	48	49	41	43	39	50	27	34
AGAAATTTTCATTCCC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GCATTACAGTATAGTA	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGCTATGCTATGC	alt_3416_reverse	2	7	13	5	5	4	7	7	3	6
AAAACGCAAGCGAAGC	alt_3416_reverse	16	8	21	16	18	16	10	11	13	13
GTCCCAGATTAAATAA	alt_3416_reverse	284	189	342	264	219	234	219	247	230	244
TCACATAGGAAGTCGG	alt_3416_reverse	8	6	12	8	4	3	2	9	5	6
GTCCCCTGTCCGGTAC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TATTGAGTCTCGATAA	alt_3416_reverse	119	108	154	150	112	134	116	123	127	124
GTCTATAGACGTCGTG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTAAAATAGCTCATGC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTCTTGACTTTAT	alt_3416_reverse	37	52	63	40	26	38	50	49	58	50
CCTCTTCCATGGGCTC	alt_3416_reverse	33	23	43	22	26	25	20	29	24	23
TCCATTATACTTCCAC	alt_3416_reverse	12	13	10	19	17	9	12	15	17	15
AAGCGGTTGTGACTAT	alt_3416_reverse	17	15	15	22	19	19	16	22	22	20
AATGTAGTCCCTTCGA	alt_3416_reverse	4	1	4	4	4	3	1	8	3	2
TTCTAACCCAGTAGCC	alt_3416_reverse	152	125	191	164	123	127	134	132	115	139
GGCTACCAGTCTATGT	alt_3416_reverse	13	10	26	20	10	33	18	29	22	26
GATGGAAGCGTCAGTA	alt_3416_reverse	30	18	21	35	15	27	23	19	21	23
TACGCCTAGCACCCTT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GCCACCCTTGAGTGGG	alt_3416_reverse	31	23	52	44	32	14	32	25	40	29
ATTAGTTTGTCCTATA	alt_3416_reverse	64	61	73	75	49	55	47	55	40	59
GGGGGTTATTCCTTTT	alt_3416_reverse	16	12	20	16	10	22	17	23	11	15
ACAACCAATCATGTGG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAAACGGGGAGTG	alt_3416_reverse	103	74	112	108	57	81	68	56	72	78
CGTCTAGGCGCCTGCA	alt_3416_reverse	16	5	13	13	12	5	9	13	11	6
ACATAACGTAGGGAAT	alt_3416_reverse	31	22	34	33	26	26	28	34	38	16
CTCAGGTTCTACTAAA	alt_3416_reverse	21	17	23	30	25	22	35	24	21	28
CAGCTCTTCAGAGGTA	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTCGTTGGTTGTT	alt_3416_reverse	24	22	44	29	40	31	15	27	38	29
ATGACATGATTGTATT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAGGCGTCTACCG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTTCAGATATGGA	alt_3416_reverse	117	90	165	121	79	121	78	123	107	115
TATCATGCTCGGTGTT	alt_3416_reverse	4	5	5	7	7	8	7	8	4	6
GGTTTGGGAACTTTTC	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCTTTGTAAACCC	alt_3416_reverse	43	32	56	42	51	39	34	49	41	40
GCTAGCTGCAGTAAAT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTGGTGCGCCTAT	alt_3416_reverse	24	14	29	14	14	24	21	17	11	18
TTTCATTCAATTCGTC	alt_3416_reverse	77	72	75	85	66	80	90	69	66	84
GGTCTCCCATGCTTCG	alt_3416_reverse	21	9	9	9	23	13	19	21	18	14
AGTTAAGGTTCGCAAT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TGGACCCGTTTGCTGT	alt_3416_reverse	55	38	71	54	49	52	39	52	49	49
GGTCTGCCTTATCTGT	alt_3416_reverse	7	7	10	5	6	7	7	8	7	10
CACTAATATACACGTT	alt_3416_reverse	68	67	80	61	63	56	56	71	61	54
GTCAAGCGGACCCTCG	alt_3416_reverse	17	12	19	13	7	14	12	19	19	13
ATATCGTGCCCTCACA	alt_3416_reverse	6	7	5	4	9	4	6	9	9	8
CCGCTACAAAGGACTT	alt_3416_reverse	50	53	65	52	43	55	62	46	40	59
CTATATCTTACATTTT	alt_3416_reverse	8	10	14	13	13	10	7	10	10	12
CTTCCCGGAGTTTTAA	alt_3416_reverse	68	38	57	61	53	47	47	58	35	59
ATGGAGTGCAGCCGTT	alt_3416_reverse	13	13	15	11	9	14	11	15	14	17
GGAAATCTCTCTTGGC	alt_3416_reverse	21	19	29	33	24	32	18	20	16	21
ATGTCTTTGTTATCTG	alt_3416_reverse	75	100	110	98	73	76	78	86	95	83
TACTCTCAGCCCTTGA	alt_3416_reverse	3	6	8	2	1	1	9	5	3	5
CGCGGGTAGCTATTTC	alt_3416_reverse	59	45	80	62	38	56	35	52	50	39
ACCAGTTGGAATCACC	alt_3416_reverse	161	163	238	208	188	196	183	196	213	205
CAACACCGGAACGGCA	alt_3416_reverse	15	11	15	19	12	13	14	14	5	15
GGAGAGCGGAAGTGCG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CATAATTCTGTCCGCT	alt_3416_reverse	38	25	42	28	31	40	31	28	21	32
TGTTCGGACTTCCGGT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGTATGTTCTGAT	alt_3416_reverse	8	9	15	11	11	11	14	8	14	14
GTGGTAGTTTGTTCTC	alt_3416_reverse	16	5	19	6	8	5	12	5	10	9
GATACGCTCTATCATT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CCACGCCTAAGGCAGA	alt_3416_reverse	5	8	3	5	6	6	10	3	10	1
TAAACTTGAGTTTAAT	alt_3416_reverse	79	68	88	89	67	88	61	85	75	73
GTGGGCCTATTAGATC	alt_3416_reverse	46	31	38	44	29	28	29	32	43	26
GAACATTCCTGGGTTA	ref_3416_reverse	16	6	14	16	12	14	11	15	19	17
TCGTCTTCGTGATATC	alt_3416_reverse	163	156	190	169	133	173	128	169	130	173
GTTGGGACACTTTACG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTTCATATTTTGTGTG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CATACCACGCATAGGT	ref_3416_reverse	62	66	83	71	105	69	86	66	94	54
TAATAGGATGTCGCTC	alt_3416_reverse	78	38	61	53	45	53	51	68	48	45
TATTATATGCGTTTCA	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
GGTGAACATTCAATTG	alt_3416_reverse	27	26	25	31	18	21	31	31	22	27
GTCGCCCATCAGTCGG	alt_3416_reverse	15	17	30	17	16	16	12	13	10	16
CTGTCTATTGCCAGCA	alt_3416_reverse	18	16	48	26	19	21	16	13	25	22
ATCTGCTTGACATACG	alt_3416_reverse	127	116	127	123	102	115	131	91	129	93
CAATTCACTTCAGCTT	alt_3416_reverse	18	21	19	21	10	22	15	16	8	16
CTTTCGTCCGAGTCAG	alt_3416_reverse	10	20	19	11	14	9	20	9	9	7
ATTTAGGGCATATGAA	alt_3416_reverse	36	25	37	38	24	39	29	37	35	27
AGCTGCTGGGGAGTAA	alt_3416_reverse	26	16	23	27	30	20	17	19	27	25
GCACTCAAAATGGACG	alt_3416_reverse	26	24	40	42	26	37	29	25	29	40
CGATCGATGAACACTC	alt_3416_reverse	21	30	13	14	27	11	19	10	30	19
GGTCATAATACGTAGT	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCTATTTTGACCG	alt_3416_reverse	14	10	7	11	11	16	11	5	10	15
CGCCTGTGCAAAGAGG	alt_3416_reverse	1	2	3	4	2	0	3	1	1	1
TCTTACAACCTTAATG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTCCGGCCCGATG	alt_3416_reverse	37	35	50	40	31	38	32	35	37	25
TAGATCCATATCGCCC	alt_3416_reverse	37	42	47	39	25	33	25	28	36	37
ATTGAAATGGCGCAAG	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTCACGCTCTAA	alt_3416_reverse	51	38	77	53	32	42	55	48	42	41
GTATATATCTTACCAC	ref_3416_reverse	38	33	30	41	44	32	37	30	57	36
ATTACCTCCGTGAGGT	alt_3416_reverse	15	15	28	27	12	26	18	15	19	23
TGGTCGCGCTTCGTAC	alt_3416_reverse	8	10	4	8	5	12	7	5	5	11
TCCGGTTCTTGTCAGC	alt_3416_reverse	16	8	8	15	7	9	11	5	11	12
AAGTGGTCTCAATAAA	alt_3416_reverse	0	0	0	0	0	0	0	0	0	0
CATACTAAAATACTCT	alt_3416_reverse	49	49	54	61	57	52	52	45	58	51
ACTTGAATTCGTGGTC	alt_3416_reverse	11	11	13	12	18	18	12	13	9	9
AAGCTGCCCGTCCTGG	alt_5934_new	43	50	42	35	64	32	66	48	66	37
CTCCTAATGAACGCTA	alt_5934_new	30	32	22	20	43	39	40	24	50	27
ATTATGTCTAAGATTG	alt_5934_new	15	19	15	22	19	8	26	15	24	13
AGTATCGGGGTAGTTG	alt_5934_new	8	5	13	15	12	3	9	8	7	6
CATGCCGCATAATTAC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
AATTTTGGGCACGCTT	alt_5934_new	121	190	154	136	172	121	167	126	156	113
CTGGGCGTGATCACCC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
ATGTACGCCCGCTTCG	alt_5934_new	6	7	11	2	6	7	6	6	4	4
CCGCGATTACTTCATA	alt_5934_new	19	26	15	10	25	17	21	18	29	13
TCCCTCTATGGACTTC	alt_5934_new	18	6	12	12	21	5	24	9	28	8
GGTAGGGTAAGTGTTC	alt_5934_new	12	23	15	20	15	18	26	14	30	13
GTTGGGCTTATATCTT	alt_5934_new	21	19	23	17	15	19	27	21	21	17
TGATTCACTTTAGGTA	alt_5934_new	11	17	14	16	9	10	17	5	17	17
GTAAATTCCGGGTCGG	alt_5934_new	9	20	16	16	30	16	22	12	15	13
AAATGCCGTTTCGATC	alt_5934_new	1	2	3	1	1	3	1	1	3	1
TACGGAACGTCGGCAG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TTATGCTCGGGCCTCT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
GACTTCCGGCCCACAC	alt_5934_new	72	68	79	69	62	71	99	62	71	58
GTTTTTATCGGCAATG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
ATTACCTGAGTTTTAG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
CAGTCATGTGATCGCC	alt_5934_new	23	19	18	16	29	17	29	22	16	23
CGCAATTAGGGTGGTC	alt_5934_new	0	11	2	3	22	0	23	3	20	2
TAAGCTTTGAGTTGGC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TTTTACAGTCGTCTTG	alt_5934_new	24	36	28	20	37	20	38	21	49	27
TTGAAGGTATCGGCCA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
ATTTCTCTCTACTCTG	alt_5934_new	121	125	113	106	108	93	138	90	140	83
AAGTGATCGGGACATG	alt_5934_new	4	10	4	7	12	3	8	2	4	6
GTAAGTCGACTTATCC	alt_5934_new	1	4	2	0	2	1	5	4	1	1
GTGATTTTTTGTCGAA	alt_5934_new	15	9	10	6	12	3	13	4	7	4
CAGCGCCCTTTCGTTC	ref_5934_new	16	26	20	10	34	26	39	18	42	16
TAAAAGCGCGAATAGT	alt_5934_new	43	60	48	46	65	36	47	37	58	44
GTCTAAGCTATTAATA	alt_5934_new	39	72	63	39	65	41	77	47	71	36
TTCGGCTTAGTTTCGT	alt_5934_new	12	19	9	12	15	13	33	12	16	6
TTCTTTCGTACCTGTC	alt_5934_new	37	42	36	29	42	18	45	30	52	24
CTTCTTTTGATTATTT	alt_5934_new	16	12	20	15	14	12	20	9	22	9
ATTTCGATTGCGCACG	alt_5934_new	49	61	54	44	39	39	64	61	55	31
CGCCATTTCATTTATT	alt_5934_new	134	125	177	138	167	146	153	144	155	135
CCGGTTTCTTAGTACA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
ATTTTTGACTGACCAC	alt_5934_new	15	24	12	23	10	8	15	17	25	12
GTAAGTTTCGCGTTAA	alt_5934_new	35	36	39	38	49	38	39	28	38	28
TTTGCTGTCAACATTG	alt_5934_new	57	70	67	46	82	60	71	49	71	43
GTTTTGGCAATTTCGC	alt_5934_new	24	38	20	21	43	13	34	16	40	24
AGTACAGGATGATCCC	alt_5934_new	9	56	23	15	47	17	46	19	35	16
GTCAGGAGCTGTTTTT	alt_5934_new	108	153	158	112	146	117	142	116	149	109
AGAACAAGGTTGCGCA	alt_5934_new	14	15	14	13	20	16	22	22	43	11
AAGCCCCACGTTGCGC	alt_5934_new	4	5	3	2	7	2	7	3	6	5
TTCCTTTGGCAGCCAG	alt_5934_new	62	66	71	63	68	41	64	58	70	51
CCTCTTCATCTTGTGC	alt_5934_new	91	169	115	97	121	121	146	121	126	78
TCCAGGTCGGAGGGTC	alt_5934_new	16	14	17	17	21	9	13	10	21	12
GCTCGCCGTTTTCTCC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TGGGCTTGAGTTCCTT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TAGTTCGCCATCCCTC	alt_5934_new	0	1	0	3	1	0	2	0	0	0
ATGTCCATCTTACCGT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
AGGCTTTCCGGGAATC	alt_5934_new	1	1	4	5	3	2	4	3	5	0
ACGGGCCTGCTCGACC	alt_5934_new	55	51	62	41	66	58	63	42	67	49
TACCGCATCGCCGGTC	alt_5934_new	10	18	9	11	16	12	19	10	22	16
GGTTGATTATCAAGTT	alt_5934_new	3	7	5	4	3	4	5	4	1	4
TGCATATCTTCTCCTT	alt_5934_new	54	58	80	63	49	56	69	74	72	55
CCCCAACGGTTGTTCC	alt_5934_new	4	7	5	4	3	3	4	3	8	5
TTCAGTTGATTGCGGA	alt_5934_new	21	74	37	24	63	29	63	25	77	22
TGTTACCGGAGATCGG	alt_5934_new	32	52	35	37	44	30	44	39	51	14
GTAGGTATTTGTCTTT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TTTAGGATGCATACAT	alt_5934_new	15	29	11	16	27	15	22	16	14	11
TGGGGGGTAACGTTCG	ref_5934_new	253	206	322	251	215	271	200	272	199	228
GTTTTGATTGGGTGCC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
GAGGTGAGCCACTGGA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
CTCGTCGACTTCATTT	alt_5934_new	21	99	13	14	61	6	82	9	94	16
GGTCGTTCAAGAACCT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TCCATTTGCGCAGATG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
ATATCCGAGCAATCGA	alt_5934_new	66	94	84	61	98	66	95	62	101	62
CTAGTGTTCAGGTTAT	alt_5934_new	10	9	7	6	4	4	9	3	5	5
CAGTATCAAGCGTCTG	alt_5934_new	1	8	4	0	14	3	11	1	6	0
ACAGCTAGAATGGTCC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
GGTCTAGGTCTTGGGG	alt_5934_new	45	66	47	43	92	28	91	29	84	42
TCTGTACAATTTGGGA	alt_5934_new	16	48	28	15	23	15	32	11	36	24
AATTGACGGTGAGCAG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
CCGAGATCAGTATACT	alt_5934_new	17	15	16	18	21	13	18	11	24	11
GAGAATAACACCAGTA	alt_5934_new	13	18	15	15	29	5	19	10	15	14
TTTGGACATTCATGCT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
CTATTGAACCAGTTTA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
ATGTCACCATTAGTAT	alt_5934_new	17	24	20	12	33	14	35	18	14	19
GCCATATGCCATGTTA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TATTTAGACATTTATT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TCTCTGCTGTGTGATA	alt_5934_new	7	20	9	8	7	10	17	7	13	3
ATGGGTTCATATGGTG	alt_5934_new	24	34	23	35	41	21	47	32	44	23
ATTTTTTTATGGCGAG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TCTTACAAACTCGCAT	alt_5934_new	0	0	0	0	0	0	0	0	0	0
CATGCTTTCCGCTTCA	alt_5934_new	12	16	14	11	19	18	10	8	13	11
TAATGCCGGGAGTTCC	alt_5934_new	17	33	24	18	27	23	29	21	22	12
GGTTGTAGTTATGGTC	alt_5934_new	3	0	0	0	3	0	0	1	0	0
TAATTACACAAATGTT	alt_5934_new	34	34	32	40	50	21	49	23	48	29
GTCTCAGATCTTTGGC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
AATTATTCTGCTTTGG	alt_5934_new	11	21	19	23	22	16	25	20	24	24
ACTCCGGTTATAATTG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
GATATTTCTTACACCT	alt_5934_new	27	22	19	28	28	25	39	25	40	24
CGTGCCTGGCACCCCT	alt_5934_new	130	164	132	148	165	102	187	103	199	128
CTCCTCTTCCCCCATT	alt_5934_new	11	18	16	16	21	13	30	16	31	9
CCATTCTGCTTATCAT	alt_5934_new	65	97	83	60	66	47	62	43	86	39
GCGTTCAGGCCGTCAC	alt_5934_new	12	15	15	18	19	21	21	13	23	12
CTATCCGCTGACCCTC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TCTTATCCTGATATTT	alt_5934_new	9	10	17	7	16	13	3	9	13	9
CCCAATCAGTAGTCCT	alt_5934_new	33	66	33	23	75	22	60	30	81	24
AGATGGTCCCCGAGTT	alt_5934_new	4	13	10	12	15	9	19	10	21	17
TGGATCTTCGCTGTGT	alt_5934_new	9	30	10	13	12	13	19	13	13	18
AAGAGGAGCCCCTTAA	alt_5934_new	5	15	12	17	16	8	11	9	7	11
TGCATAACCAAGAGTA	alt_5934_new	17	34	8	23	23	11	23	14	18	17
TCTCTGATCTACCATG	alt_5934_new	20	37	15	21	46	16	46	20	46	17
CAGGGGTGTTAGCTTG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
GTAGCGTTCCCTACTA	alt_5934_new	51	86	73	71	87	62	103	57	97	59
GCCGTGGGTCAAAGTA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
CAATTGGCCCACTGAC	alt_5934_new	10	38	7	4	35	2	49	9	33	8
ATACAATGGATTGTGT	alt_5934_new	16	19	27	22	17	14	32	17	31	18
CCCCCTGTTTAGAACG	alt_5934_new	0	1	0	2	0	1	2	1	0	1
GATGTTCCCCTGCATG	alt_5934_new	14	9	9	15	20	9	16	13	10	5
CGGTCAAATTCACTTA	alt_5934_new	40	33	47	45	62	26	55	37	57	21
TGCTTGGGTGGTCTCT	alt_5934_new	4	12	6	3	7	9	8	6	10	6
TGTCGACCGTCTCCGG	alt_5934_new	7	11	8	6	4	3	12	6	4	6
CGACCCCCTCGCGTGC	alt_5934_new	12	17	11	11	18	13	41	6	32	13
TGTTCCCGTGGCTGAC	alt_5934_new	0	0	0	0	0	0	0	0	0	0
AGTGGATGCGCTATTT	alt_5934_new	30	55	37	34	54	28	57	35	64	27
CTTGTAGACCTCTTGG	alt_5934_new	8	13	4	7	15	5	7	8	16	5
AAATAACTCAATTTGA	alt_5934_new	30	30	35	28	28	33	32	18	36	26
CCAGTAATGTAATTCT	alt_5934_new	19	12	15	11	18	11	24	13	28	15
GGTTTAATCGTTGTCA	alt_5934_new	1	6	4	10	8	5	4	3	3	2
CTTGCTAGTCTCTCTG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
CGATACTTTAGGTAGA	alt_5934_new	42	80	41	49	66	28	69	46	47	37
GATTATTCACTCCGTC	alt_5934_new	3	14	3	0	22	1	15	2	18	2
CATATATGCTGACACA	alt_5934_new	7	6	2	4	3	2	6	4	5	4
ATGGTCAATAATTTTT	alt_5934_new	57	91	80	72	85	65	82	76	76	51
GTCGGACTGTATCTTT	alt_5934_new	11	18	13	9	19	8	16	12	20	8
GCTTTGATATGCCATA	alt_5934_new	27	38	51	36	36	25	31	22	44	35
TTCTTCTTGTGGTATA	alt_5934_new	40	75	41	55	60	42	63	51	63	52
CACAATCTGAGTCGTT	alt_5934_new	5	3	3	4	4	1	4	6	5	4
CTCACTCTCTTTGTCT	ref_5934_new	417	194	458	420	228	387	219	359	239	345
ATAACTGTATATGGGC	alt_5934_new	8	7	16	7	7	4	11	16	10	10
CGCTGCTGCCTCTTTA	alt_5934_new	8	0	4	3	3	10	4	1	5	2
TGGCCAATTGTAACAA	alt_5934_new	44	60	45	33	61	46	86	40	77	33
ACTATCGGGTCGTCTA	alt_5934_new	66	144	98	79	139	83	168	85	168	70
ATTGACAGATTCAATT	alt_5934_new	36	53	27	19	51	34	45	30	32	21
CATAAACGTATGTTCA	alt_5934_new	6	4	3	2	8	6	7	1	7	5
GCGCCATCCTTCTACC	alt_5934_new	41	84	61	40	77	41	100	59	103	50
TCTACGGAATGCTTTC	alt_5934_new	18	28	31	32	32	18	41	18	23	19
GCATTCTGCGTTAATG	alt_5934_new	7	24	18	10	5	13	19	11	14	13
CCCTCCCCCAAAACCC	alt_5934_new	21	28	29	29	37	21	32	20	34	19
TGTGATATCACAGGGT	alt_5934_new	35	46	53	35	76	47	64	45	63	36
GTGCCCTTGCAGCGCC	ref_5934_new	275	173	303	284	163	266	160	276	164	260
TCGCAGCCCTTACATG	alt_5934_new	13	29	13	14	21	13	32	11	25	14
CCTACGCTGCTCGCTT	alt_5934_new	1	4	4	4	8	1	5	2	6	0
AGATCAATTCTTTGTA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
GAGTCTGGGAGTGGAA	alt_5934_new	1	3	6	2	3	3	2	2	0	1
CCAACTCTTGTTCTCC	alt_5934_new	30	86	43	39	73	40	81	29	107	21
CCCATTGATACATCGG	alt_5934_new	5	11	2	2	2	0	2	2	5	1
GATGGGTTATCCCCCG	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TTTTATTCGTGCGTTT	alt_5934_new	4	8	7	11	12	5	19	6	13	8
GTTATTTGTACTGATA	alt_5934_new	0	0	0	0	0	0	0	0	0	0
TAGTACCTAAGAGACA	alt_5934_new	20	32	32	21	27	13	32	18	39	13
CTAATTCAATCCATTC	alt_5881_new	72	80	50	56	75	56	84	49	63	45
TTTCCGTGGGGACAAC	alt_5881_new	6	11	22	17	13	7	11	8	6	7
TTGACCGCACTAACGC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GCGTTAAGGTTGGTCG	alt_5881_new	8	7	15	10	9	8	12	12	8	5
CTATTCGACTCGCGTA	alt_5881_new	7	1	5	3	6	5	12	3	20	1
GCAATGTTAATTGTTG	alt_5881_new	13	13	13	4	20	15	19	6	12	8
GGTAGTTCTCGTACAC	alt_5881_new	6	32	4	8	25	3	30	9	40	3
TCGCGGTGGCATAGTG	alt_5881_new	6	11	6	5	8	6	10	7	18	5
CAAAATGTACACATGC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GCCCGTATGCGTGATT	alt_5881_new	15	18	20	10	19	18	20	15	21	9
GCCGCTCAATAAATCT	alt_5881_new	13	21	16	14	36	11	12	18	25	12
CCCCGTATCAAGTCCT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GTGTAGGATTTAAAGC	alt_5881_new	8	13	16	15	19	8	8	15	8	4
CAATTTTGCGGTTGCG	alt_5881_new	0	0	6	5	1	1	2	3	4	2
ACAGACCTTTAAACGC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
CTAGCCTCATTTACAG	alt_5881_new	28	41	40	34	37	29	52	31	43	19
GAGCAAATTTGTAGTT	alt_5881_new	78	100	99	58	92	75	90	58	106	80
TTGGGATCTTATGACC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GAACCCCGGACCTTCT	alt_5881_new	53	77	94	66	83	60	97	79	80	59
ACGGCCTTTTGGATCG	alt_5881_new	10	22	16	8	16	12	25	14	19	19
GTCCTTTTAAGATGTT	alt_5881_new	18	34	27	19	38	24	36	29	34	9
CGTGCTGTGGTTCAAT	alt_5881_new	13	21	17	5	15	10	7	5	15	7
AGCGCCAAATAGTATG	alt_5881_new	0	0	0	0	0	0	0	0	0	0
AGCAATGGTGTTTCAC	alt_5881_new	10	12	12	20	22	5	22	4	11	7
GGCCTGATTCCTCCTT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
AATTGTGCAAACGACG	alt_5881_new	0	0	0	0	0	0	0	0	0	0
ATGCGTATCTCGGAAA	alt_5881_new	21	32	23	29	31	20	20	20	39	19
TCCCGGCCACCAGTGG	alt_5881_new	0	0	0	0	0	0	0	0	0	0
TAGTTCTTTAGGGGTC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GGTCTCGCGTAATTCT	alt_5881_new	8	19	10	14	12	16	12	3	10	10
CAAGCTAACTGTGACT	alt_5881_new	12	4	8	8	17	5	5	5	13	6
GGGCGCTAATTTACAC	alt_5881_new	26	22	28	29	25	19	22	22	20	17
ATCGTGCGCAATTCCA	alt_5881_new	0	1	1	0	5	0	3	4	0	3
GCGGTTAAAGGCCCGC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
AGGTCGCCTTGCTCCT	alt_5881_new	4	25	14	11	31	5	27	6	24	5
CCTGCGTCTCGTAAGT	ref_5881_new	208	255	225	197	280	220	262	173	265	191
TGAGTTAACATCTGAT	alt_5881_new	2	7	2	12	5	3	5	3	7	7
GAATTTCTTATCCCGT	alt_5881_new	2	2	6	4	8	3	3	5	4	6
CATAGTGAGTCTTATT	alt_5881_new	6	16	9	9	15	7	16	11	13	12
TGGTGTCCTACCATAT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GGAAGAAGGTTTACCA	alt_5881_new	59	77	70	45	68	53	68	52	76	37
GTCTACGTGATTTCAC	alt_5881_new	18	30	14	22	26	24	40	21	33	14
TTGATAAACCTCCCTA	alt_5881_new	10	12	13	13	21	8	15	12	13	7
CATCGTTATCCCCCCC	alt_5881_new	40	48	48	52	60	37	57	48	70	48
ATATCCTTTTTATACT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
TTAGCTCAGGGTGAAC	alt_5881_new	83	82	92	64	91	52	76	55	106	62
GATCGTCACTTCCTTA	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GCGTCTATGTTTCCGT	alt_5881_new	30	62	39	32	29	29	40	34	50	22
AACTCGTGGAGCATAT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
ACTCCCCCCATGTAGG	alt_5881_new	2	4	2	5	6	2	8	5	7	4
ATTACTCTATTCCAGT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
TCATCTTTCTCTTTAT	alt_5881_new	93	80	87	75	79	56	81	47	94	44
CCCAATCCATTCAAGT	alt_5881_new	9	10	13	3	10	8	15	5	17	10
GAACGTATTCCATCTG	alt_5881_new	8	8	20	17	15	4	14	9	12	5
TTTGCATACTCATTCT	alt_5881_new	24	25	31	26	33	17	35	19	29	18
GGTGAGGCAGATGAAT	alt_5881_new	25	37	28	32	27	28	29	25	43	26
ACGGGTGCCAGGCCAG	alt_5881_new	84	96	74	71	102	62	100	57	108	46
GACCAGCATGCCGTTC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GGGCTTATGATGCGAC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
ATCCTCATGCGAGACG	alt_5881_new	11	10	12	9	7	5	16	8	8	15
TGTATAATCATTAGCA	alt_5881_new	3	5	2	5	5	3	9	4	7	2
CAGGCTAATACCCGGT	alt_5881_new	19	36	30	10	19	18	41	26	31	24
GTCTAGCTACTTTGGT	alt_5881_new	10	34	24	32	28	8	31	22	46	18
TCCAGCGGTTTCCACG	alt_5881_new	12	15	17	15	26	14	24	12	23	13
GTACACGATGAAGTTG	alt_5881_new	4	8	4	7	11	8	6	10	6	2
CTGATAGTAAATTGAC	alt_5881_new	4	9	4	6	17	5	2	6	10	12
TTATTTTAGCCGATTA	alt_5881_new	22	21	33	16	17	21	34	16	32	10
AAAAGCGCCACTTACA	alt_5881_new	0	0	0	0	0	0	0	0	0	0
AGGGCGTGTAATAGGT	alt_5881_new	3	8	12	10	5	5	13	9	8	7
GAGGCTATTCTCTCCT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GACCTTCACTACTCCT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
TTGATGACAGATATAT	alt_5881_new	33	45	30	23	36	24	25	21	41	18
GACACTACTAGACCCG	alt_5881_new	7	9	3	8	18	9	13	6	9	7
AACATCCCTGTTCCAT	alt_5881_new	6	9	5	6	10	5	14	5	7	5
CAATTTTAACGGGGGA	alt_5881_new	14	12	12	12	12	15	17	13	10	10
TCAGAGTGGATTTACT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
CCGCGCGTCTTATCTA	alt_5881_new	11	36	15	21	36	12	41	6	35	4
AGTGTTCATCAGTCTA	alt_5881_new	2	3	7	5	2	3	7	2	2	0
CATGTGACAGCATAGC	alt_5881_new	8	12	7	5	5	5	12	5	9	4
CGGCTTGCATGCTGTA	alt_5881_new	16	19	25	20	23	16	28	7	28	10
GAATTACTGTGTCTGG	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GCCTCGAGTCCCCGCA	alt_5881_new	5	4	3	3	4	1	6	7	6	2
CTACATGTTCCACCTG	alt_5881_new	12	13	6	14	14	6	14	12	8	6
TAGTTTTCCATTCTTC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
ATCCTCCGCATTTCTC	alt_5881_new	6	15	13	9	13	4	18	6	12	6
CAAGGCCAGGCTATAG	alt_5881_new	20	49	32	21	36	22	42	22	32	20
GATTCCGGCACCCACT	alt_5881_new	67	77	89	78	87	41	65	54	106	69
CTCAGCTGCGAGACGG	alt_5881_new	4	8	6	5	10	8	7	4	14	5
CCTTGGTGCTATTCAC	alt_5881_new	2	7	6	7	2	3	11	5	10	3
TATCAGCCCCGCACGA	alt_5881_new	17	9	6	6	11	8	8	9	11	4
TTCCATCAACATTTTA	alt_5881_new	0	0	0	0	0	0	0	0	0	0
CTTAACTAACCCATAA	alt_5881_new	24	20	21	12	40	25	30	18	29	20
ATCCCGGTTCAAAAGA	alt_5881_new	44	51	52	37	46	31	47	31	62	26
GTTAGTTCGGGCTCGG	alt_5881_new	81	118	90	98	101	68	107	86	104	78
GTGTGTCTAATGTATA	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GTTTGATGCTTCTTTT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
CTCTTTAGCAGTTAGT	alt_5881_new	27	35	35	29	40	22	44	30	54	16
TGCAGCCCAGCTAGTT	alt_5881_new	13	26	20	23	17	20	24	10	17	10
TTGTAGCGCTGCTGTG	alt_5881_new	1	1	6	1	1	2	6	7	2	5
TGTGGTTATCTATAGC	alt_5881_new	8	6	10	6	8	5	11	6	25	6
TCTCATTTACTCAAAC	alt_5881_new	8	7	10	7	12	7	4	5	9	0
GGCATTATCTGTTGCT	alt_5881_new	5	5	4	7	2	3	12	2	4	5
GCCTTCACGGTACACC	alt_5881_new	2	6	10	6	11	7	13	9	14	4
GTTCTACCTTTGCTGT	alt_5881_new	26	44	28	35	51	29	61	31	51	34
CCTGTCTTACACGGTA	alt_5881_new	5	6	7	1	8	2	9	2	7	6
CATCCGTGATATGCAA	alt_5881_new	4	9	8	5	11	4	8	10	6	4
TTTCACTAATTATGGG	alt_1218_RC	94	103	95	92	114	94	115	83	120	79
CATTTATTAGGGCCTT	alt_5881_new	35	52	48	48	54	31	70	46	58	30
GCTTATCGGAATATCG	alt_5881_new	0	0	0	0	0	0	0	0	0	0
TATGGTTTCCGTAGGA	alt_5881_new	14	26	28	30	15	26	23	29	25	19
TCTGGACATCTTTCTC	alt_5881_new	42	35	51	33	50	27	60	34	65	31
CAGAATTACTGTAATT	alt_5881_new	21	45	29	19	38	30	46	23	32	22
CCCCGTTAATGCAAGC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
CGGTAAACCGGTCTCA	alt_5881_new	37	45	41	45	37	30	35	24	42	24
CTCACTATGGCTCCAG	alt_5881_new	0	0	0	0	0	0	0	0	0	0
CCTACCGACTCTGGTT	alt_5881_new	0	0	0	0	0	0	0	0	0	0
CAATGTATTATACGTT	alt_5881_new	7	6	7	4	3	6	10	0	4	2
GGAGGTTCTGTATTGT	alt_5881_new	22	38	32	37	49	25	47	29	36	27
TCTGGATCCCTTATTT	alt_5881_new	68	105	68	66	106	55	106	57	101	54
GGCTATAGTTGATGTT	alt_5881_new	11	9	10	8	8	4	13	6	10	8
AACCGGTCGCCGGAGC	alt_5881_new	13	12	8	8	25	4	20	7	10	10
CCACGTGGTATGGTAC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
TCGTATCGCCAAGTTC	alt_5881_new	0	0	0	0	0	0	0	0	0	0
GAGGGCCTGTGCTACC	alt_5881_new	43	58	46	47	65	41	63	49	76	43
TCGCAACTTCAGCCAT	alt_5881_new	11	21	8	9	17	15	11	16	18	10
ACTTTTGTTTAATTTC	alt_5881_new	24	29	41	23	34	32	34	30	38	22
TTACGTTCATACATTC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
ACGTGATCACAATCAT	alt_5997_new	27	17	38	22	29	21	29	18	29	19
TTGTTCGAAATCGGGG	ref_5997_new	5	22	11	10	18	13	23	21	13	12
CTTATTTCTTTCTTTA	alt_5997_new	232	178	288	269	230	230	214	243	224	197
TACATGTTTTCAAGCA	alt_5997_new	42	37	50	41	33	29	38	36	26	34
GACCCTAACTAGGGTC	alt_5997_new	24	28	41	29	39	35	48	28	36	29
CAGCTCCGCCCACATC	alt_5997_new	15	50	21	31	49	19	43	19	57	13
CATCATTTACATGCGC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TGGTTAGGGGTGGTGA	alt_5997_new	60	51	83	47	71	58	60	36	50	43
AGCTCCGGTTATTGCG	alt_5997_new	19	32	24	17	18	16	21	15	23	13
CACGAGTATTCGGTCT	alt_5997_new	43	47	35	35	57	32	45	39	47	22
CGTCCGATTTTGCGAT	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TACGTTTTGAACTTCA	alt_5997_new	87	82	100	103	98	75	80	80	99	58
ATTGGGAACCGGCCAT	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GTCGGTTATGGCCCTG	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GTCCACTATACTTGAG	alt_5997_new	14	20	21	13	17	13	23	10	21	11
GGGTTTCGGTAATTGA	alt_5997_new	30	32	47	32	56	25	45	26	38	35
TCGGTGTCCAGGCAAA	alt_5997_new	4	8	6	1	3	3	7	4	7	0
GTGTCACTCTCCCTGT	alt_5997_new	5	12	2	4	6	1	6	1	15	2
GCCAACTGTTTCAATG	alt_5997_new	13	5	11	11	16	6	9	6	14	5
GTCGGTACCATGTGAC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CATTACATTTGAGTTC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
AACCTATCGGGTTATT	alt_5997_new	0	0	0	0	0	0	0	0	0	0
CGGCCGAACTGCCTTT	ref_5997_new	10	15	17	22	22	21	24	13	19	11
AACTGACCGTGGCGAA	alt_5997_new	15	13	15	18	17	8	11	13	8	7
CAACTGCCTGCGCGGC	alt_5997_new	9	17	20	17	14	14	15	11	28	13
TGGTGTGATTTACGAG	alt_5997_new	48	31	38	29	41	46	21	34	41	33
TCACGCTTTTGGTGGA	alt_5997_new	13	16	18	13	20	22	12	15	11	17
TGACGTCTACAGCGCG	alt_5997_new	64	47	61	71	62	50	52	54	59	50
ACACGACGATGGAAAA	alt_5997_new	21	22	41	23	31	18	24	17	27	27
CTCATAGGAGGTTCCT	alt_5997_new	22	32	37	27	38	27	22	20	24	21
GTTACCTGAGCCTCGA	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GCTCAGGTAGGCCCCG	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TCATATTATAAGTATA	alt_5997_new	39	50	22	19	43	24	36	33	43	22
GATCGCGAAGCCACGG	alt_5997_new	0	0	0	0	0	0	0	0	0	0
ACTTATCGCGCGCTCT	alt_5997_new	3	12	9	6	10	7	7	3	8	12
CATATTTGACGCCTGC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TCATGCAGGATCAATG	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TGCTATTATTCAGATG	alt_5997_new	8	4	7	3	9	4	11	3	8	8
CTCCTAGATGATTGCA	alt_5997_new	8	6	6	6	15	7	16	4	10	6
ATATTGGTCCCAACGG	alt_5997_new	38	39	51	46	37	38	56	35	66	27
CCCTCAAATCCGGTGT	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GGCATCGTTGGTCAAA	alt_5997_new	0	0	0	0	0	0	0	0	0	0
CACCTGGCCATTAGAC	alt_5997_new	3	13	8	8	8	9	10	7	17	4
GATTCAAATTGGTATG	alt_5997_new	48	66	61	56	56	43	70	54	75	61
CCTCGATGCAACCTGG	alt_5997_new	8	10	9	10	14	19	19	6	10	5
TTTGAGCCGGCCTAGC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GTGATGATGATCAACG	alt_5997_new	5	0	6	3	6	1	6	4	8	5
TTAGCCTCCTGAGCTG	alt_5997_new	17	16	15	11	38	12	22	13	19	16
TCCACCAAGTCTTTAT	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GCCTTTACGATACGTT	alt_5997_new	0	0	0	0	0	0	0	0	0	0
ATCAGATACTTAGATC	alt_5997_new	34	21	25	11	24	28	40	17	24	13
TGGTCCGTCATCAAGG	alt_5997_new	14	24	18	14	16	5	19	8	20	11
GTAAGTGATAACGCCC	alt_5997_new	13	13	16	9	13	15	20	16	13	18
CTAGGAGTTGAACCGT	alt_5997_new	27	31	25	36	32	27	39	20	31	25
ATGATCCAGTCGGACC	alt_5997_new	99	115	105	107	136	94	132	94	134	96
AAGTTAGCAAATAACT	alt_5997_new	37	37	32	33	50	30	23	29	36	28
CGCTATTCTCACGAAC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTGCCTATAAG	alt_5997_new	27	35	48	49	54	32	57	35	58	30
AGGTCCTGACTATTCA	alt_5997_new	1	0	1	2	1	1	1	1	2	2
GGGCGTGAAATCTCGT	alt_5997_new	40	68	45	41	46	53	59	51	56	26
GCCATTTTCACGTGAA	alt_5997_new	26	31	40	30	43	28	36	23	39	34
TGATCCGGCGGTGAGC	alt_5997_new	63	98	71	87	89	63	110	78	124	58
TTGATAAACATGCCGA	alt_5997_new	55	60	74	64	55	56	71	56	52	42
CCTGCGATAGATAAAT	alt_5997_new	14	33	24	28	27	20	27	16	29	13
GAACATTCATTTCCTA	alt_5997_new	27	29	33	29	42	28	29	22	30	37
ACCGGAGTGTTTTTCG	alt_5997_new	5	3	4	3	5	1	5	1	1	5
AAATCTTACGTGCACA	alt_5997_new	21	19	14	20	10	9	16	7	18	12
CGATCGCAACCCGGAG	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GATGTACTGAGAGTAA	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TGATTTTACTAGACGA	alt_5997_new	40	32	53	35	29	37	54	29	50	26
GCCGCCATGCTCGTCT	alt_5997_new	0	0	0	0	0	0	0	0	0	0
CTAGTTTGCATTCAAG	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TGATTACGGACAATCT	alt_5997_new	25	22	28	36	19	20	21	25	20	21
TCAAAAATGTATATTT	alt_5997_new	83	68	83	72	73	58	64	56	67	59
TGTGTGCGATGGTAAG	alt_5997_new	241	200	277	270	265	252	267	218	219	202
TTGCGAGGACTGCTTC	alt_5997_new	1	3	5	4	3	5	4	3	9	8
GTTCACTGAATCCTTG	alt_5997_new	4	9	8	8	9	7	11	7	9	9
TAGCTCTGTTTCCTGG	alt_5997_new	0	0	0	0	0	0	0	0	0	0
TACAAGCTCCACCTGT	alt_5997_new	40	142	51	47	119	40	141	47	121	46
CAACCGGTAGTTAGAC	alt_5997_new	8	15	7	12	11	6	10	7	6	10
GGGGTTGTCTAGATAC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
AGTAGCGTACGAGTTA	alt_5997_new	0	0	0	0	0	0	0	0	0	0
ATTATTTCACTATCTA	alt_5997_new	5	6	7	9	12	8	10	7	16	10
TACCCGTCGGGTGGCC	alt_5997_new	8	15	8	4	8	8	11	4	7	3
TTTTTAATTTGTCGGT	alt_5997_new	37	36	38	29	28	34	27	28	48	22
GACTCCACGAGCTCTA	alt_5997_new	0	0	0	0	0	0	0	0	0	0
CAGATAGTCCACTTAC	alt_5997_new	0	0	0	0	0	0	0	0	0	0
GTGGGCGTGAAGCACT	ref_298_RC	7	4	3	2	6	7	7	5	4	1
CCTCGAGGTCATCATT	ref_298_RC	0	0	0	0	0	0	0	0	0	0
CGTATCACCTCTTTCA	ref_298_RC	32	38	32	20	46	18	37	23	39	28
AGGATTTGACTTGTAT	ref_298_RC	20	24	36	14	46	21	25	15	29	23
ATCCAATCGCTTAGGG	ref_298_RC	63	62	53	40	52	36	68	40	70	50
TTTTACAGCGAACAAG	ref_298_RC	43	33	56	42	47	52	68	46	64	34
TCGGAGCAATCGCCAT	alt_298_RC	58	45	58	40	36	52	65	45	51	46
GTCCTTATTTCACTGG	ref_298_RC	21	16	18	13	13	21	18	19	20	19
CCAGCTTTCTGCCTGG	ref_298_RC	0	0	0	0	0	0	0	0	0	0
AAAATTTTACGTCCTT	ref_298_RC	13	20	25	12	21	18	11	14	17	9
TCAAGTATCTGCAATT	ref_298_RC	8	30	28	14	18	21	25	22	25	18
GTTTACCGTCGTAGCG	ref_298_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGCGGCTAGCCT	ref_298_RC	170	252	228	206	203	179	248	162	264	180
TCCCATCTCGCCTTAC	ref_298_RC	35	70	47	46	84	23	66	32	103	33
GGGCTCGTCTGCATGA	ref_298_RC	65	79	96	61	95	68	99	60	86	72
TCGGAATAGCGGAAGC	ref_298_RC	13	14	20	18	16	5	11	12	17	9
CTCGTTGTTGTGGTTA	ref_298_RC	0	0	0	0	0	0	0	0	0	0
TCTTAGCTTTTGGGTG	ref_298_RC	260	323	362	278	336	258	342	268	374	227
GGGTTCCGCTTAATGT	ref_298_RC	59	72	88	51	67	49	60	52	69	53
TAGACGAAACTCCGCT	ref_298_RC	78	75	81	77	83	66	67	63	93	70
CTAGTAGTATTGCTTA	ref_298_RC	34	399	52	65	511	42	450	32	453	21
TATCAAAACAAGATAG	ref_298_RC	0	0	0	0	0	0	0	0	0	0
ATTAGACCTCGTGAGT	ref_298_RC	0	0	0	0	0	0	0	0	0	0
GACTCTTTCACGAAGG	ref_298_RC	37	30	36	27	42	35	29	36	40	31
GTTCTCGCTTTGACGT	ref_298_RC	6	29	19	15	24	14	37	20	28	14
CAAGCCCGTTGAAGTT	ref_298_RC	24	29	35	36	50	27	31	28	48	13
CGCATGGCCAGTGCAA	ref_298_RC	7	12	5	6	2	10	9	6	11	4
TTAGTGATGTACATTT	ref_298_RC	0	0	0	0	0	0	0	0	0	0
GGATCTTCATTCTGCT	ref_298_RC	53	83	85	53	83	54	99	52	101	54
TTCTTCAGGCAGGTCG	ref_298_RC	34	39	24	15	24	25	22	11	24	24
TCCGAACCCAACTGCA	ref_298_RC	13	13	18	10	22	9	25	19	16	12
TTATATTTGAATTCGT	ref_298_RC	53	58	62	60	48	43	58	70	59	38
GGGGCTACAGATAGTT	ref_298_RC	31	43	40	30	49	28	44	31	19	35
GGCCTTTGGACCTTGG	ref_298_RC	50	54	56	48	38	39	62	30	59	45
AGGATATCGCTGCTTC	ref_298_RC	129	180	187	151	148	149	177	134	182	112
TTTGCTCACTATTACC	ref_298_RC	0	0	0	0	0	0	0	0	0	0
TTGAACAAGATGATTG	ref_298_RC	92	87	93	72	105	69	98	53	97	55
CACGCTATCTTTTCTG	ref_298_RC	67	90	82	61	86	61	80	57	87	58
CTAGTTATAAATGTGC	ref_298_RC	22	23	29	16	46	17	22	18	34	14
AGGCAATTAAGTAGCT	ref_298_RC	600	835	769	582	768	623	858	570	793	577
CGGGCGATTAGTACTT	ref_298_RC	0	0	0	0	0	0	0	0	0	0
AGGATTGGTGCGAGCT	ref_298_RC	0	0	0	0	0	0	0	0	0	0
GTATGTACTAAGACCT	ref_298_RC	36	57	61	49	68	38	59	27	68	35
TTACTTGTCGGCAAAG	ref_298_RC	0	0	0	0	0	0	0	0	0	0
CGCAGTGCGATTTAGT	ref_298_RC	109	161	129	114	149	98	164	108	146	104
CCGCATTTTGCATTTA	ref_298_RC	47	57	54	53	62	39	48	48	55	54
ATCGTTGGGACTGAGA	ref_298_RC	3	10	8	12	17	14	12	17	12	11
CTATCGTGGCCAACAC	ref_298_RC	13	21	6	9	20	16	13	13	16	19
ACAGTGTTTTACGGTT	ref_298_RC	0	0	0	0	0	0	0	0	0	0
CCATCGGCCATTTGAG	ref_298_RC	13	11	9	7	5	4	6	2	11	1
ATTGGCCCCCTCACGG	ref_298_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTTTCACGTTCA	ref_298_RC	0	0	0	0	0	0	0	0	0	0
CACGGTCACTCTTAAA	ref_298_RC	6	12	15	9	11	6	8	16	11	5
GGACTTCCAGGTCATA	ref_298_RC	14	33	32	22	38	17	33	23	30	24
TGTGTGTTTCGAAACG	ref_298_RC	53	96	55	63	89	43	100	49	91	41
CCGACCCTGCGCACCA	ref_298_RC	68	24	80	75	39	54	26	53	37	37
CGCTGGCGAGTCATTT	ref_298_RC	10	14	20	11	11	8	11	13	18	4
GAACATAGCTAATAAG	ref_298_RC	37	40	43	35	43	43	49	40	60	31
GTTGCTCTGAATCTAA	ref_298_RC	0	0	0	0	0	0	0	0	0	0
TGGGACCAGACTAGAT	ref_298_RC	0	0	0	0	0	0	0	0	0	0
GGCCTGAGACACTTTT	ref_298_RC	43	46	63	57	66	46	46	49	54	40
GGGGTTCGACTTTAGT	ref_298_RC	23	44	30	24	38	25	42	31	48	30
ATGGGTTGACCATGAT	ref_298_RC	31	52	30	19	35	24	52	23	47	20
AGTTCGTTGCATTAAC	ref_298_RC	20	45	23	20	47	22	41	23	32	31
TAATTGTCAAAGGGGC	ref_298_RC	6	3	6	5	2	0	6	5	3	6
CGTCGCCACGGTTCCA	ref_298_RC	14	14	19	17	17	21	15	16	17	20
CATCCGAAGCTGTAAG	ref_298_RC	17	14	17	19	9	13	9	20	22	4
CAGTTTCAAATGACTA	ref_298_RC	0	0	0	0	0	0	0	0	0	0
GCTGGGAGCCGCTTCC	ref_298_RC	0	0	0	0	0	0	0	0	0	0
CTCGACCGTTTAAATC	ref_298_RC	0	0	0	0	0	0	0	0	0	0
GGGCTGGTCTCAGTCT	ref_298_RC	91	102	119	87	110	74	123	91	112	71
GTGTTTTTCCCTTGTG	ref_298_RC	19	21	25	16	14	13	20	10	27	13
ATTCACGCTTGAATAG	ref_298_RC	42	60	38	32	64	29	48	36	61	34
CGGCTCCACTGTCACC	ref_298_RC	71	129	75	62	105	49	126	76	120	55
GTTCTTCCAACGTGAT	ref_5769_new	52	45	72	54	37	51	61	41	48	30
AGTTAGTCACAACCTT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CTGAAGCACTCCATTC	ref_5769_new	9	7	6	4	6	7	6	8	10	17
CGAATGGTGATCGGAG	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GGGTGACGTGAAGTTA	ref_5769_new	8	10	8	9	7	11	10	6	12	8
CTCAGCTATACTAAGC	ref_5769_new	3	4	6	14	10	7	13	8	8	9
GTGTTTACGTCTTCGC	ref_5769_new	42	44	61	55	36	48	37	36	41	36
TGGCGGTTTTTCGGCT	ref_5769_new	9	17	16	21	11	18	8	10	5	12
CAGCCGAGATGATGGG	ref_5769_new	25	39	41	29	33	30	41	36	28	26
ACATACCCGGATCTAC	ref_5769_new	25	17	37	25	16	21	23	23	34	18
CGAACGGTGGCTGGGG	ref_5769_new	0	0	0	0	0	0	0	0	0	0
AAGAACATCGATACGA	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GCGTTGAGTTTTTACG	ref_5769_new	60	66	87	77	76	75	87	60	79	69
GAGACTTGCTATGCCG	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CGATAACCGTATTCGG	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CTATCTGCTTAATGTG	ref_5769_new	4	3	5	5	5	3	6	1	3	3
CTTATGTATATTGCGG	ref_5769_new	11	10	9	14	14	12	13	7	15	8
CGAGGGGGAGTTTTTG	ref_5769_new	138	132	166	125	98	124	118	131	102	123
GCCAGGTCTTATACCA	ref_5769_new	1	4	2	3	0	0	0	1	7	3
AACATTGGTCATCGGT	ref_5769_new	14	17	33	25	16	17	18	17	24	13
CTCCATCATGTTCGAT	ref_5769_new	8	12	12	18	7	13	7	12	15	10
TTTAGAGTGTCGCGTA	ref_5769_new	20	31	38	20	19	19	27	14	26	25
TCATCTCGGTCTGAGT	ref_5769_new	65	111	67	77	96	68	136	75	111	62
GGGGATACCTTATGTG	ref_5769_new	74	69	92	78	84	80	71	89	80	69
TGCACATCGCAGGGAG	ref_5769_new	6	15	5	9	8	7	15	8	14	8
CTTTGCTTTTTGCTTT	ref_5769_new	193	174	264	243	189	202	159	219	184	193
GAAAAGGGCCATATCT	ref_5769_new	44	36	38	33	28	45	35	34	32	41
CACGCTGGTTGCATCC	ref_5769_new	16	18	29	17	10	24	7	18	22	14
CCTCTTTTACCCGTTG	ref_5769_new	4	3	9	7	11	1	7	1	9	4
TTTATCGACTTCGGTC	ref_5769_new	42	54	66	50	35	45	33	44	43	33
CCCTTAATGATGCTGG	ref_5769_new	18	14	35	19	20	27	23	15	20	21
ACCTTGTGGTTCGGAA	ref_5769_new	25	20	22	18	23	17	14	19	21	15
GTAATAAGTCCACTCT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GACGACGTGAAACGGT	ref_5769_new	60	42	58	48	60	53	49	45	48	44
TGCGTGTTTACTTTTC	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TCTGTGCTAGCCAATT	ref_5769_new	135	129	166	154	136	136	148	118	138	122
TAGGACAATTTCTATA	ref_5769_new	172	142	208	183	146	151	198	159	162	137
TTTTTGTTATCTCTTA	ref_5769_new	43	31	55	61	35	29	39	30	52	39
CAACTGCTGCTCATCT	ref_5769_new	12	20	23	21	19	17	17	9	8	22
TACTCCTCAGTTCCGA	ref_5769_new	5	5	10	14	6	9	8	5	6	7
CCTGAGTTTGGGTGGT	ref_5769_new	36	39	35	41	44	51	38	39	33	36
GTTTTAAGTGTATCTA	ref_5769_new	5	0	4	6	3	7	0	1	4	6
TTTCCTTTTCCGACAT	ref_5769_new	24	25	36	33	24	31	18	21	32	28
ACTGAGACATTCGTTA	ref_5769_new	19	3	11	9	9	17	16	6	9	8
GGGTAGAAATTTGGTA	ref_5769_new	34	28	30	27	22	23	31	16	26	23
TCGTAGTCGGCCGGTA	ref_5769_new	63	50	74	60	54	73	53	57	61	53
GCCCTGTGTGCGTTAC	ref_5769_new	24	44	29	29	31	30	32	30	44	26
TAGAACACGAACGTCC	ref_5769_new	0	0	0	0	0	0	0	0	0	0
AGGGCTTGCTTGACCT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TGCCCTAGGGTACAGT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TCACATCGTGGTGTTG	ref_5769_new	44	27	54	42	41	34	46	66	33	39
CGTCCCTTTCTTAATT	ref_5769_new	0	5	2	3	5	9	5	6	2	6
TTTCTGTAAAGCATAC	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TTTTAAGCAAGCTATC	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GGTGAGAGCATTGGAC	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CCGTTATTCATACGTG	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GGTTCGCCCGTTTTAA	ref_5769_new	63	54	80	89	74	71	73	61	68	71
GGCAGCGCAATTGGCT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CTACGATTCGGGGGAT	ref_5769_new	80	74	98	88	65	86	65	109	64	51
CCTGGTGGATGTCTGA	ref_5769_new	85	56	66	60	63	64	78	57	68	58
AAAAGCTTCGTTTTAA	ref_5769_new	145	136	185	172	120	120	135	132	130	142
TGTTGAGTTTCAGCAG	ref_5769_new	77	69	106	81	62	100	68	85	81	73
TTGTCGGCAGTTACAT	ref_5769_new	55	39	52	41	47	38	42	46	47	38
TAGGATGAGTCTGCGT	ref_5769_new	18	13	28	16	23	23	17	12	16	14
TTCGTTAGGCGCGCTC	ref_5769_new	26	21	34	34	21	30	27	16	20	27
CATTAGGTATTTGGCA	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TCGTATTCATTTCGTC	ref_5769_new	3	1	6	2	3	2	3	4	1	3
TTTAACATCTCGTCGT	ref_5769_new	55	38	61	56	29	45	46	45	52	37
CTCTGACTGGAACAAG	ref_5769_new	4	3	1	5	4	3	2	3	3	0
GGAATATAACCAGCTA	ref_5769_new	38	31	51	51	35	58	39	32	48	29
CACCTAGCTAATCGTA	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CGAACCCACTAACCTG	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GTTCGTGACGGTAAAT	ref_5769_new	21	33	29	30	27	30	39	22	25	30
CTGTCTGCAGGATAAT	ref_5769_new	117	121	121	125	117	126	122	99	128	124
GTGCGCCGTCAAGGGT	ref_5769_new	10	24	37	15	23	10	16	12	13	16
TAAGCTATTCGTCAGT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TTTTTTCTACACCTTT	ref_5769_new	53	43	62	44	42	53	59	30	54	49
TCATCTCGGTCTGAGA	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GGTGATTGCTTTGTCT	ref_5769_new	7	4	10	4	4	6	4	8	7	8
CTTTGTCGTCTGCCTC	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TCGCAAGTAGGCTCCG	ref_5769_new	5	4	7	12	2	6	6	7	5	5
CTCGTTGTTAGTCCAA	ref_5769_new	26	35	53	35	31	37	41	32	43	44
TTTTATCATTCTTCAC	ref_5769_new	11	11	10	9	19	17	10	25	10	8
CCTTAATAATGGCATT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CGCTGAGTCCCATTTT	ref_5769_new	9	11	14	11	12	14	11	12	16	10
ATCACGCAGAAAGTTA	ref_5769_new	21	25	25	25	26	18	30	27	30	18
TATTAGATTACCTATT	ref_5769_new	12	24	24	21	13	12	26	10	18	20
TTTGCTCGAAACCGTG	ref_5769_new	14	15	12	15	13	6	5	12	13	12
AATCGCCGTGTCTATC	ref_5769_new	19	14	32	31	17	25	31	29	18	17
TATGGTAGCTTCCCCC	ref_5769_new	0	0	0	0	0	0	0	0	0	0
GGCTTATGTCAGCCAT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
CACGCTAACCAACCTT	ref_5769_new	0	0	0	0	0	0	0	0	0	0
ATGGTGAACGTTACGG	ref_5769_new	0	0	0	0	0	0	0	0	0	0
TCTTAGAGGTTTCTCG	ref_5769_new	12	20	22	14	13	22	15	14	19	19
TCTAGTTCGTCAATGG	ref_5769_new	10	8	22	14	4	7	11	13	9	7
AATAACCGAAAATGGG	ref_5769_new	107	82	129	110	80	86	80	71	97	79
ATTAATTGATTTTTAG	ref_5769_new	57	24	74	57	48	51	32	45	48	46
GAGACGACCGTGCACG	ref_5769_new	20	27	40	35	28	28	33	21	27	22
CTGGTTTCTTCCCGGT	ref_5769_new	9	9	4	6	8	15	17	3	10	4
CGTTCAAATTTGATAT	ref_5769_new	68	65	94	74	45	75	68	61	107	62
GAGAGGCAGCGATTTG	ref_5769_new	108	94	138	107	97	109	106	116	114	100
CCAGAGTTTAGGCTTA	ref_5769_new	7	12	6	9	19	6	10	6	20	6
TTCTGGTTTGATTGAG	ref_5769_new	53	39	83	48	46	67	56	57	60	57
GTGTGTTTGGATATGG	ref_5769_new	19	12	23	21	23	25	17	10	18	15
CGCTTCAGCACCTCTT	ref_5769_new	13	2	7	5	4	6	3	14	8	1
CCTCCATAGGCACATG	alt_2205_RC	301	180	326	267	174	291	235	293	218	270
TGCCTGAGCCCCATCT	alt_2205_RC	70	35	81	69	33	53	43	74	54	61
TCCTCCTTCCGATTTT	alt_2205_RC	10	4	16	7	4	10	7	9	6	6
TTTTTAATTACGGGTA	alt_2205_RC	7	3	4	0	0	3	4	1	4	6
TCGCACCATTTATTGC	alt_2205_RC	56	23	46	47	23	42	25	37	26	22
CCAACGAGAGTCCACT	alt_2205_RC	50	24	55	53	53	40	29	38	36	44
TACTATATCAGAAATC	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
ATACACTCGTGACTCG	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
GGCGCAGGAATTGCGG	alt_2205_RC	20	12	23	19	9	23	14	23	15	21
TAGGCCTATTTCTCTC	alt_2205_RC	28	13	39	37	16	33	17	20	20	23
GCCCGCTACATAATGG	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
TTCGGCTGGCACTCTC	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
CATCGGCCTGGATTCT	alt_2205_RC	147	87	178	124	109	118	103	141	119	117
AGCTTCGACGTGCACT	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
CACTATATACCAGAGA	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
TCAGCTACGTTTTTCC	alt_2205_RC	111	100	149	124	95	124	110	140	113	109
ATTTCCCAGCGATCTC	alt_2205_RC	68	43	77	76	41	66	29	56	33	59
GTTACATACCCAGTGT	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
TAAATAGATTTCTCTG	alt_2205_RC	224	97	260	257	130	194	145	202	108	169
GTGGTAGTTTCTTTAG	alt_2205_RC	73	42	93	94	45	72	45	52	54	72
CTCATGCGAGACGCAC	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
CCGGGTTAACTCGTCG	alt_2205_RC	82	52	83	63	62	77	67	66	66	76
TATTTCCCAGAATATA	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
CGGCCTACCGTAAACG	alt_2205_RC	12	5	10	15	12	14	8	14	5	22
CATGAGGGTTTTAGCA	ref_2205_RC	133	73	139	123	54	110	72	108	91	96
TGCAGCCGTTATAACC	alt_2205_RC	36	22	35	55	27	24	40	36	23	29
GTGGGGCTAGATTAAG	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
TGAAAGAAAAAGGGAT	ref_2205_RC	584	402	765	638	428	576	455	622	412	533
CTTTCGCTTGACAATT	ref_2205_RC	103	107	139	149	90	138	89	111	94	85
GTTTTACCGAGACTAT	alt_2205_RC	21	16	21	22	14	22	21	18	12	21
GGTGCGCTAATGACAC	alt_2205_RC	65	34	68	83	55	68	42	59	38	55
AATTCGTTCGTGTTCT	alt_2205_RC	20	9	18	20	14	17	14	18	15	15
GATGAGATGAAGCATA	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
TTCAACAATTTACCTC	alt_2205_RC	5	6	10	4	2	6	7	4	3	3
GCTGCGGCTTGGAATA	alt_2205_RC	44	18	46	29	15	40	29	29	33	35
GCCTACATTCCGGACG	alt_2205_RC	9	11	11	13	9	11	5	13	9	8
TGTCAAGTTGTTGCAC	alt_2205_RC	0	1	0	1	1	0	0	1	0	1
GTTGAAGTACACGCGA	alt_2205_RC	12	9	20	9	9	12	7	8	5	9
CCCTAGGCATCTGTAG	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
TGCTTGTATCAATCTA	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
CGGCTGCCTCCTGGAA	alt_2205_RC	18	8	26	14	13	25	12	18	17	21
ACGGGTCAGGACTACC	alt_2205_RC	13	9	11	12	8	18	18	10	7	9
CTGAGTCGATGACCAA	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
TTGCCTGCAACTTACG	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
ATACGTCGAATTCATG	alt_2205_RC	39	19	37	29	23	45	36	35	20	38
AATGTAATTGCGCATC	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
CCTAGGGGAGTGGCTG	alt_2205_RC	73	47	101	76	43	90	72	85	56	69
TGCGTGAGGCCAATTA	alt_2205_RC	14	9	14	19	12	18	9	16	18	12
AGAAAGAAAAAGGGAT	alt_2205_RC	2	0	0	0	0	1	0	0	0	0
TACACAATGCCAACAC	alt_2205_RC	63	67	110	90	55	86	67	66	81	77
CCATTTCAAGGACAAG	alt_2205_RC	160	67	233	170	94	168	120	142	104	149
GCAGTCCCCCTCGCCC	alt_2205_RC	71	61	94	85	56	102	68	97	62	94
TGCTGCGCCAACAGGG	alt_2205_RC	0	0	0	0	0	0	0	0	0	0
ATGAGTGTTCCATATT	alt_2205_RC	77	65	98	84	53	92	49	72	61	64
CCCTCCAAGTTACTTT	alt_2205_RC	180	112	240	206	109	185	118	196	115	166
CACATTGTGTAATTAT	ref_5181_fdr	19	23	16	17	16	18	25	5	21	11
TGTTGTGCTATCGGGT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GCGACCACCGACGGAT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCTGTGAATGCAG	alt_5181_fdr	242	231	283	237	239	225	257	238	257	232
AGTTGTATGGTCAACC	ref_5181_fdr	18	24	25	26	38	20	38	18	25	13
TTCTCAACACCCGGGA	ref_5181_fdr	71	88	78	96	86	41	87	68	93	63
TTGGGGGATTACCCAT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CTACTAGCTGGCCCCT	ref_5181_fdr	6	11	12	10	5	9	13	5	9	11
TATTACCCTAGGCTAC	alt_5181_fdr	117	129	117	111	149	97	121	71	117	85
TGCCCATGGTATTTAT	ref_5181_fdr	29	36	27	31	18	22	30	16	42	18
CGTTTTCTACTCAAAG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TTGAAAGACAGGTTCG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGAGTTCGATTTG	ref_5181_fdr	10	26	25	20	33	28	26	19	39	17
TTAATCGATTCTGCTG	ref_5181_fdr	3	1	4	6	5	3	5	5	10	3
CGGGCCTGGCATAATG	ref_5181_fdr	5	13	14	3	12	6	11	8	10	9
GTGTTGGCGTATACGT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GTAATCTCTTGTTGCC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCTATAGTCATTC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CAATCGTGTTCACATG	ref_5181_fdr	187	256	211	210	268	179	224	179	314	155
CCTTCCCAAGTGTCCG	ref_5181_fdr	25	26	28	21	26	13	30	27	35	27
CTCGATTGATTCGTTC	ref_5181_fdr	92	107	95	97	117	90	121	69	124	87
TTTCTCCTTAGATGCA	ref_5181_fdr	4	5	5	2	2	5	14	2	6	5
CCGTAGTGGCTATGCC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
ATCAAACCGACCCTCT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CTGGACCTTCCTTGTA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCCCTTTTCATTG	ref_5181_fdr	43	64	49	45	74	49	94	49	100	35
TACGTTGATATACACT	ref_5181_fdr	20	29	34	28	27	27	37	23	42	10
GTGAGAGACGAGGCAC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCTTTCTCCACC	ref_5181_fdr	17	15	13	6	7	8	17	12	15	11
CAATATCAATACCAGC	ref_5181_fdr	101	89	93	78	101	96	101	84	105	81
GCTACATCAAGAGATG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CCCGAAAAGTCAGGTA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCCGCACCGCGAT	ref_5181_fdr	114	167	146	127	163	127	151	147	183	87
TATTTTTTATAGTACT	ref_5181_fdr	34	60	38	32	53	21	58	29	47	40
ACGCAGCGCAACGATA	ref_5181_fdr	45	63	48	48	59	38	75	29	69	50
TGAAGGCCGTCGGTTG	ref_5181_fdr	8	12	14	8	9	8	19	5	23	11
GTACTACCTCCTGTTG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GTGATAAACAGCTTGG	ref_5181_fdr	29	56	67	56	53	49	53	29	71	31
CTTATTGTTGCTTCTG	ref_5181_fdr	102	153	129	115	149	121	130	99	117	117
CCTTCCCGAGTGTCCG	ref_5181_fdr	29	48	39	25	31	23	33	20	42	18
CGGCCCGTACAGCGAT	ref_5181_fdr	53	47	42	54	48	37	45	33	61	48
GGATTATTAGGTCCTC	ref_5181_fdr	11	16	17	14	28	21	13	19	22	19
TATAAGATCGGCTGCT	ref_5181_fdr	141	206	146	159	199	142	206	152	203	139
CATCGTTTTAGAACTG	ref_5181_fdr	12	16	11	21	12	15	15	15	22	13
TGATTTAACAAATACA	ref_5181_fdr	7	12	13	10	7	13	8	9	12	15
ACAACTGCGCACGCCA	ref_5181_fdr	133	171	163	143	184	134	208	114	194	130
TTATACCATTGGGTGC	ref_5181_fdr	16	11	13	14	18	7	15	13	19	15
GTTATTGGATTAGATG	ref_5181_fdr	34	47	21	31	41	25	40	30	49	22
AACTCTGAACTAACTG	ref_5181_fdr	3	11	7	8	12	8	7	8	9	8
GACTCCCATTTGTGGG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCTCTACCATTCG	ref_5181_fdr	135	159	138	135	169	96	151	132	175	132
ATAGGTTCGATAAGTA	ref_5181_fdr	33	54	52	25	70	34	85	32	79	37
TATTAAGCGCCTTTCT	ref_5181_fdr	74	67	83	50	79	67	67	50	90	60
TCGATACACTCATAGC	ref_5181_fdr	14	17	12	8	29	6	16	9	24	9
CACATGGGCCCTGTTG	ref_5181_fdr	4	14	5	5	6	5	4	9	14	10
AGGAAGCGGCCTCACC	ref_5181_fdr	93	200	88	80	178	81	227	81	229	79
GTTTACAAGCTTAGCA	ref_5181_fdr	80	75	79	71	79	66	99	66	79	43
ACAGGCATAGCTAATC	ref_5181_fdr	105	118	141	120	113	117	103	133	106	101
AACTACTCACCGTTAC	ref_5181_fdr	15	135	12	15	129	24	85	17	103	6
CGACGTCATCTGAGGT	ref_5181_fdr	24	33	22	17	35	13	28	16	37	28
TGCACAATCGAACATT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CGACGGGACTCACGGG	ref_5181_fdr	6	8	6	3	7	7	9	2	10	7
GGGTGTCCCGATGTGA	ref_5181_fdr	2	7	9	3	11	5	4	10	3	4
TTGATATTTTCTTACC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
AAAACCTCAGGTGCGA	ref_5181_fdr	24	29	38	21	36	43	47	25	35	29
TTAGGACATTACCTCA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCCAGCCTAAAAG	ref_5181_fdr	75	130	98	75	157	77	144	65	172	68
CGCCCGCTCGGGTGAT	ref_5181_fdr	5	14	7	5	14	8	18	10	18	3
TCTAGGTACTTGGATA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGTGTCGCCGAAC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GGATTTGTACCAGCCG	ref_5181_fdr	18	19	15	25	26	24	16	11	18	14
CTAACCCTAGGGTTCG	ref_5181_fdr	25	48	29	38	52	33	48	21	65	23
TGCACCCCTAGAGTGT	ref_5181_fdr	21	15	30	18	17	15	25	14	27	16
CGAATTCCATGCCTGT	ref_5181_fdr	32	33	29	13	37	22	34	22	30	27
AATTAAGCGCCTTTCT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCTGTTCACGGGC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GCATCGCTGGTTTGTG	ref_5181_fdr	18	29	25	29	31	28	22	18	43	28
GCTGTCATGGTGGTAC	ref_5181_fdr	17	7	13	17	13	8	11	14	14	6
GGCTTATGATACGCTC	ref_5181_fdr	44	82	55	39	69	60	70	32	78	38
TTTATGCCGGCCCCCA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCACTTCTCCGGA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCAGTTCAACCGG	ref_5181_fdr	21	46	33	31	52	23	42	20	46	15
AAGTAAGTATAAATGC	ref_5181_fdr	14	8	15	13	7	18	11	4	8	5
TCATTTTATTTTTCTT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTAAATTCAATAC	ref_5181_fdr	60	47	53	47	59	26	59	42	58	29
ATTTTGCCTTGATACT	ref_5181_fdr	0	0	0	0	0	0	0	0	1	0
ATGTATTTAGTTTGAC	ref_5181_fdr	3	5	5	1	4	3	6	2	7	6
GAACGTTGACAGAGGA	ref_5181_fdr	2	6	6	6	0	7	6	3	16	2
GTATCGCGTACGTCAC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
ATCATGTACGGCCTAA	ref_5181_fdr	28	30	25	24	28	20	36	24	39	30
CAGGAGTTCCTATACT	ref_5181_fdr	52	77	64	44	73	52	68	45	70	47
GGTAATGACACAATAC	ref_5181_fdr	37	53	67	47	66	51	71	39	70	40
TCCGCGATGGACTATG	ref_5181_fdr	23	15	16	21	31	10	16	12	13	6
GGACTACAACCGTAAC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TATCTCGTGGGTTCTC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGATTTCCAGGCG	ref_5181_fdr	39	54	37	40	40	32	50	32	49	33
GCTAAGGGGCGATATG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGTAAAGCTGCTC	ref_5181_fdr	71	76	79	81	99	74	86	75	104	61
TGGATTCATACGATCG	ref_5181_fdr	82	88	74	92	91	76	98	71	106	88
CTAGTGAGTCCTTCAT	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTACTCCCAGAGT	ref_5181_fdr	10	4	6	8	5	7	11	6	16	7
ATAATGACACCTTGGG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
GAGTGGCCCTCTCGCA	ref_5181_fdr	30	48	42	46	45	35	45	48	47	24
CTTTGGGTTTGTCTAT	ref_5181_fdr	40	49	45	33	52	34	41	29	60	28
AATATTCCTATTCAAT	ref_5181_fdr	19	12	20	15	21	17	9	20	27	9
AGCCCAGGTTAGGCGC	ref_5181_fdr	30	43	34	22	45	38	48	29	50	18
GGGTTGCCATCGGTGC	ref_5181_fdr	10	9	19	16	19	6	18	8	22	4
TTGATTTGCGCGCTGG	ref_5181_fdr	26	24	19	30	30	13	17	20	25	20
AACTGTAGACGGGATA	ref_5181_fdr	18	18	22	15	16	15	12	14	18	12
GCATGCGAAGGCTAAA	ref_5181_fdr	9	5	7	4	6	5	20	4	10	8
CGCTCGTTCCCCTATG	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
CACGGTTGATGCTTGT	ref_5181_fdr	207	238	221	202	275	205	312	159	283	176
AACTATTGGCGCGCCG	ref_5181_fdr	0	2	1	3	1	0	2	2	3	2
GTGCCAGTGTTATGGA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTCTTCCCCGCCG	ref_5181_fdr	2	22	3	3	23	3	21	3	26	6
AATTGATCGAACGGGG	ref_5181_fdr	36	36	34	36	35	26	40	30	41	40
ACTTCGAGGCCATCAT	ref_5181_fdr	7	11	3	9	14	5	7	9	14	5
CCGGACAGTGCTCCTT	ref_5181_fdr	3	13	17	13	17	12	13	4	15	10
CCTTCCACGTATGCCA	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAGTTTCGCACGC	ref_5181_fdr	319	377	314	270	296	272	421	208	401	264
GGATGAGCATCACTAC	ref_5181_fdr	0	0	0	0	0	0	0	0	0	0
TAGGCTCGCCCCAAGA	ref_6094_new	537	484	608	522	495	520	481	472	523	483
TGCCCTCCCACAGTAG	ref_6094_new	81	96	120	115	86	86	117	90	120	80
CTAGGCTGTCAAATGA	ref_6094_new	0	0	0	0	0	0	0	0	0	0
ACCTAAGACAAGGAGT	ref_6094_new	8	12	5	10	12	8	17	10	15	5
GACTAGCCCAGTGGGT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
CATCTGTTTGATGTAG	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TGCACCTGCTCGCTTC	ref_6094_new	11	35	30	31	24	14	16	28	31	16
GGGGTTTAGAGTTCAT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
AATCGGTACAGTGATC	ref_6094_new	9	12	12	10	14	3	13	9	11	14
ATTTCCCGGCTTGGGA	ref_6094_new	33	27	28	26	19	24	15	20	28	28
TTAGCGCCGAGTCTCC	ref_6094_new	47	45	35	23	31	30	49	32	34	35
CCTGTGACACTCGGGG	ref_6094_new	7	4	6	10	4	6	5	3	1	9
CAGTGTGGTCCTGTAA	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TCCCTTGTGACCACGG	ref_6094_new	9	19	13	22	15	15	19	7	19	19
ATGTATCCGGACCAAG	ref_6094_new	28	33	45	44	48	34	43	30	35	27
CACGACCTTTCGAGTA	ref_6094_new	16	22	16	17	25	13	33	16	34	17
CTTTTATGTCACTATT	ref_6094_new	14	13	26	12	31	37	13	16	25	20
AGGTAGAGAAAGTAAA	ref_6094_new	13	11	20	17	14	11	19	9	16	14
TCATCATATTGCTGCT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
AGGATTAAGAGGCAAC	ref_6094_new	20	16	21	19	19	17	30	26	17	14
AAGTGGTTACACTAAT	ref_6094_new	6	6	5	9	7	4	6	3	2	0
TGACTTACTGGCTCCC	ref_6094_new	0	0	0	0	0	0	0	0	0	0
ACTTTTTATCCTAGGT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TTGTTCGGGACCGTAA	ref_6094_new	7	7	10	2	11	3	14	3	10	14
CCGCGCTGAGTGCCCA	ref_6094_new	29	29	68	40	22	41	39	38	45	28
GAAAGCCTTGGTGGTT	ref_6094_new	11	17	19	14	26	14	11	23	12	15
TGATACACATTGAATA	ref_6094_new	0	0	0	0	0	0	0	0	0	0
CGATAATGCGGAGTTA	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TTTTACACTAGCGACC	ref_6094_new	29	43	37	26	32	25	30	26	28	24
GTTTTTGCCGACTTTT	ref_6094_new	19	24	27	17	31	19	17	11	18	17
CAGGTTTGCCTTCAGA	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TGAATTTATGTCGTGC	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TATTGAGCCTTGTCAT	ref_6094_new	8	8	12	9	7	2	8	6	3	8
ACTTTTTTATCCTAGG	ref_6094_new	97	86	108	98	89	90	85	91	99	87
CAACGTTATTTCATCG	ref_6094_new	41	51	63	47	44	56	59	50	63	46
GGAAACGGTCCCACCA	ref_6094_new	60	52	82	55	51	74	69	61	76	55
ACTACACGGGTGTTTT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
GCCTTGATACGAAAGA	ref_6094_new	10	14	13	13	16	18	25	10	22	13
TTATTCTGAGACGTCT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TGCGTTTAATTACTTC	alt_6094_new	94	61	99	63	78	66	80	75	67	74
ACGACTCACTGAACTT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
GGATATGGGCGCCAAG	ref_6094_new	72	67	72	46	46	60	57	72	50	56
ACTTTTGGGATGAGCC	ref_6094_new	0	0	0	0	0	0	0	0	0	0
AGAGATATTAAACTTT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TGCCCAACTATTTGCC	ref_6094_new	0	0	0	0	0	0	0	0	0	0
AAGATGGTTGACTCTA	ref_6094_new	27	15	28	29	19	27	18	34	21	19
TGTTACCCATCTCCCT	ref_6094_new	41	28	51	37	35	32	44	44	41	28
TTTGAGCACATGGTTA	ref_6094_new	28	34	33	33	29	37	48	14	43	29
CGCAAGATGCCGTACA	ref_6094_new	82	55	76	91	64	71	58	70	59	84
AGAGCGCTTCTCTCAT	ref_6094_new	176	198	246	186	193	188	239	173	242	174
GTTAAACATACGATGT	ref_6094_new	44	31	77	48	38	51	56	56	60	50
CTATTACCCCATCGGA	ref_6094_new	104	100	109	132	108	107	122	100	123	83
TAGAGTAGGACTCCTC	ref_6094_new	36	41	40	26	42	41	42	41	44	27
GAAGTCTTTGGTTCGC	ref_6094_new	19	15	15	9	21	9	15	15	22	15
CCGCTGATGTAACATT	ref_6094_new	44	42	65	62	38	42	42	55	38	37
TCACGGTACGTCGTCG	ref_6094_new	0	0	0	0	0	0	0	0	0	0
TCCCGGATTGGACGCA	alt_6094_new	0	0	0	0	0	0	0	0	0	0
TCCGGAAAATGCAGCT	ref_6094_new	4	3	0	0	0	1	4	2	1	1
TGCACATGCTCCGTAC	ref_6094_new	97	125	143	142	108	124	121	102	141	125
AGGCTACGTGGTGCTT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
GCCCAGTCTATAATTA	ref_6094_new	0	0	0	0	0	0	0	0	0	0
AATCCCTTACGCGGTT	ref_6094_new	0	0	0	0	0	0	0	0	0	0
CTTTCTAAATGGCGGG	ref_6094_new	0	0	0	0	0	0	0	0	0	0
ATACGCCGCCGAAGTT	ref_6094_new	81	68	87	68	86	73	93	76	85	66
AGTTCTGTCTTATCAA	alt_2374_upstream	8	16	13	10	10	5	8	5	11	8
GGCTCTCGTTGGATCG	alt_2374_upstream	28	19	25	21	22	20	31	23	28	16
CCACGGATTACACCGG	alt_2374_upstream	10	9	16	5	12	12	14	3	11	5
CGTCACTGCGCTTTTA	alt_2374_upstream	65	74	95	69	118	67	95	63	112	69
TTCTTTCATGACTGTG	alt_2374_upstream	14	11	12	19	14	9	15	9	19	13
GCTGTCTCATCTACAG	alt_2374_upstream	6	10	17	9	14	14	18	12	23	10
ACGGCGTATTACATCG	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTCACGATCAACG	alt_2374_upstream	20	28	26	18	29	26	29	17	16	22
TATTTTCACCATTGGT	alt_2374_upstream	58	64	71	64	69	44	68	57	70	60
TTGTCTTTGGGTATAC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CTGATTGTTAGCTAGC	alt_2374_upstream	331	344	397	325	358	298	428	305	440	298
GTCAATAAAGTTAATC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TATAGCTATGAGACAT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CCTTATGCCCCATGAT	alt_2374_upstream	12	27	12	11	15	19	16	9	14	7
CCGGGGGCTGTTTTAA	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
AAATTGGCAAACAACA	alt_2374_upstream	176	184	173	175	213	168	210	144	200	166
GCTGTCCCTGCGGCTG	alt_2374_upstream	16	27	29	29	28	29	35	24	44	18
TAATCGGGCCGTCTAT	alt_2374_upstream	49	59	57	53	64	36	74	53	67	53
GCTTACTAACACTCGC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCTTGCATTCAT	alt_2374_upstream	3	0	2	4	0	1	3	2	2	1
ACCTGGTTTATTATGT	alt_2374_upstream	59	44	49	49	48	41	67	48	75	53
TTGAAGAAAGATTTTC	alt_2374_upstream	8	15	16	17	24	15	14	22	27	20
TGCCGCGCAGATTGCA	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGCTGCAATTGTT	alt_2374_upstream	3	9	8	2	6	4	5	2	9	7
TACACCACTATAACTT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCTGAGTTAACTT	alt_2374_upstream	60	48	62	55	57	54	71	48	64	61
ACTAGCTCTGTTTAGG	alt_2374_upstream	2	7	7	3	5	7	3	9	4	5
GCTTCTGTACAAGTCC	alt_2374_upstream	56	71	80	74	68	64	80	63	80	71
TACGACGTAGCACTTG	alt_2374_upstream	29	32	28	20	26	30	32	22	28	34
GATTGTATCTATCATT	alt_2374_upstream	24	37	24	24	29	20	32	26	35	16
TTCTACTCAATCCAGA	alt_2374_upstream	63	63	63	55	66	58	68	55	68	35
TATAGCTATGAGACGT	alt_2374_upstream	93	90	105	88	79	61	114	75	118	91
ACACACGGCTCCTGGC	alt_2374_upstream	54	46	49	39	52	46	62	25	57	32
GCAATTGCGGCACACT	alt_2374_upstream	231	252	278	233	304	220	308	185	285	214
TTTTAATTTGCGCCGC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CATTACAACCTGGGCT	alt_2374_upstream	25	24	25	23	26	23	32	20	26	26
AGATGTCTCATCTAAG	alt_2374_upstream	45	47	41	48	52	42	32	43	48	43
CACCGTAGGGGCTGAC	alt_2374_upstream	2	4	4	2	4	5	3	0	5	1
TACGGCTTACACTTGC	alt_2374_upstream	31	46	44	45	52	28	45	41	57	31
GTTGGCTCATCGCCGG	alt_2374_upstream	4	8	8	7	10	15	9	6	13	16
TGTCAATGCGGGGGAG	alt_2374_upstream	10	12	15	13	7	15	8	9	7	13
CTTTCATTCAGTTGGG	alt_2374_upstream	81	67	62	56	73	65	80	67	69	53
CAATAGTTACTATAAA	alt_2374_upstream	78	117	127	85	126	80	116	75	108	75
ATACATTTAAGGTCAT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCAGTTCTTATGC	alt_2374_upstream	131	119	157	115	136	116	102	99	150	91
GGTGGTCAGCGATGTA	alt_2374_upstream	14	19	21	14	17	21	16	19	20	18
TCGCATCCGCCTCCAC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GGACAGGATTTGTGTC	alt_2374_upstream	15	23	14	16	21	12	31	11	23	15
CACGTTCAACGTGACA	alt_2374_upstream	15	26	32	23	31	16	28	19	27	18
TAGGTGCTGGTATCCT	alt_2374_upstream	28	36	33	26	29	25	38	35	25	26
CAGGGACAAACGAATG	alt_2374_upstream	23	35	30	23	43	25	55	21	46	29
TTACCGTCAGGTCACA	alt_2374_upstream	23	30	23	17	29	13	31	21	23	18
GAATTCGTTAGGGTCT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
ACAACCGCATCTCTGA	alt_2374_upstream	3	11	7	9	9	3	10	6	11	6
CCTCTTTCACCCTTGG	alt_2374_upstream	30	49	31	37	64	36	57	25	60	38
ATTATCGACTATTCCA	alt_2374_upstream	98	89	108	100	89	104	106	94	131	70
AAGAGTGTACCCTTGG	alt_2374_upstream	110	135	140	105	106	129	134	99	122	89
GATGCCAGATTAGTTT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCATTTTAACTTG	alt_2374_upstream	3	0	1	5	1	1	0	2	1	1
TCTACCCAAGGGTCGT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
ACGGGGACTGATATGT	alt_2374_upstream	66	69	71	58	76	57	73	57	70	51
ATATTCTTATTAATGA	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGCGGGCTAGCTG	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCGCAGCTGTCTC	alt_2374_upstream	22	26	23	22	22	23	19	23	26	17
ACGCCTAGGAGAGGGC	alt_2374_upstream	41	39	52	32	64	29	52	26	37	19
TGTTCTCTTCAAAACT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCTGCGATAGGT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GCTACATACCGCAATT	alt_2374_upstream	13	13	7	6	12	9	11	5	10	8
GGGGCTTTTCGGTGAC	alt_2374_upstream	29	33	47	32	37	19	39	29	39	27
GGAGCCCGTATCCCTG	alt_2374_upstream	43	43	50	40	39	53	42	53	43	34
TTAAATGTTTGTAATA	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CAAAACCTCGCCTCTA	alt_2374_upstream	27	34	42	28	42	38	34	40	50	19
GTTCAGCCGTAGGGCT	alt_2374_upstream	9	21	13	9	20	8	10	14	25	11
GTCCTGATGGAAGACG	alt_2374_upstream	75	92	100	92	76	77	81	87	81	80
AAGGACCGCTTTTCGT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGCGACACTTTAC	alt_2374_upstream	10	11	20	22	18	11	14	19	20	22
TCCATTTGTCTTACAA	alt_2374_upstream	0	11	3	2	3	3	7	2	3	1
CGCTCACTTATGTCAG	alt_2374_upstream	14	26	25	21	28	14	28	10	23	19
CTGCAGTCGCCATCCC	alt_2374_upstream	20	48	37	33	39	23	32	36	45	13
ATTGTCCTCGGTATCC	alt_2374_upstream	30	38	34	37	37	31	31	27	37	20
GCTCTGTAGAGAGAAG	alt_2374_upstream	17	11	25	15	24	12	14	11	18	13
TAGCTTTTTGAGATAA	alt_2374_upstream	31	36	40	29	22	19	35	29	36	30
CGGTCTGTTCGTATAG	alt_2374_upstream	23	41	33	16	43	28	59	28	48	21
CGAGCTTACGAGTTCT	alt_2374_upstream	4	2	4	1	1	1	3	1	2	0
GGGGAATATGGTTATC	alt_2374_upstream	54	56	63	51	45	57	60	57	62	34
GTCCGTTTATCCTGTC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGATGGAGCTGTG	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TAATAACGGCCATACC	alt_2374_upstream	12	16	19	22	14	17	17	18	14	13
CATGCGACTGCGCCTC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTTTGATTTAGTG	alt_2374_upstream	10	14	13	6	15	12	12	9	7	13
TTCGGCTTATTACACC	alt_2374_upstream	3	12	4	4	13	5	5	10	13	6
CGGTCGTAACTCCGAA	alt_2374_upstream	2	14	6	2	9	3	9	4	13	4
AGGGTTAATAACATTC	alt_2374_upstream	21	32	25	25	16	27	20	9	42	15
ACCGCACCGGCATCTT	alt_2374_upstream	5	8	8	5	6	7	7	8	6	9
ACTTTCTATCGATTTG	alt_2374_upstream	51	52	48	47	52	35	56	43	50	45
ACTGCTCCCGACTGTG	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CAGTAAGTACTTTGCA	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTTGAAGAGCCTA	alt_2374_upstream	18	28	33	18	26	16	20	27	28	17
CTATGTAGTATATCCC	alt_2374_upstream	12	24	25	26	20	17	14	13	19	17
TCGTTCTGGGACGCAT	alt_2374_upstream	42	47	38	38	40	31	27	34	51	27
CCCGCTAATACCCTGA	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GCCCACTTTCTGTTCG	alt_2374_upstream	32	37	37	29	30	48	39	43	35	52
GGTCGCTGTCGTTCTG	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCAGAGCTTGCAT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TGTATGAGCTGCCATC	alt_2374_upstream	28	34	33	34	27	22	33	22	25	22
AGGCGGAGGCTCTGTT	alt_2374_upstream	4	5	12	10	9	5	11	9	11	10
TTTCGAATACGGCCGT	alt_2374_upstream	120	137	120	132	121	125	137	128	104	104
ACTTTGCGTACTCGAC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTCATAGCGTAGC	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGTACCCCTTCAT	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TGCACTTTCATGTTAA	alt_2374_upstream	6	8	5	4	10	6	7	5	15	6
CATAGGCGCTCTATAG	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTGACCGGCTGTT	alt_2374_upstream	13	14	10	11	17	7	13	7	10	8
CATGAAACAGTTGTAA	alt_2374_upstream	0	0	0	0	0	0	0	0	0	0
TAGTATACGAGCCCTT	ref_2371_missing	19	34	43	30	18	32	30	15	36	28
GTCTGGTCGCAGGTAA	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CAAGGACCTGTGCTCG	ref_2371_missing	60	83	113	63	76	77	91	59	91	71
ATCGGGCATCACGGTT	ref_2371_missing	20	17	14	26	21	27	23	31	22	20
CCCTATGCAAGTCAGA	ref_2371_missing	32	68	48	44	66	30	58	30	60	37
AATCATTGTATGCACG	ref_2371_missing	66	60	118	92	73	54	87	57	74	72
TTATAATAAGCGTAAG	ref_2371_missing	34	41	22	23	31	30	41	25	32	30
AATCCAATTTTTTGGA	ref_2371_missing	41	40	40	21	40	33	28	21	28	25
TGTTGTAGTGCTAATT	ref_2371_missing	136	91	119	106	94	95	107	90	119	85
TGCGGCTCTTGGTACT	ref_2371_missing	6	11	8	11	10	11	10	6	7	14
GCATGTTCTTTAGGGC	ref_2371_missing	11	7	8	10	13	10	11	8	14	9
CTCCGTTGACTTGAAA	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CCCTTCGCTAAAGCCT	ref_2371_missing	104	125	141	133	98	110	138	121	101	99
TCTGTATTCCTTTCGT	ref_2371_missing	8	4	10	12	5	9	4	8	10	13
ATATATTTGGCACCTT	ref_2371_missing	13	11	11	9	6	10	6	18	6	9
TTTCCCCCGCAGAGCG	ref_2371_missing	3	1	5	2	3	1	1	0	0	0
TTTTTTTCCAGGCTTC	ref_2371_missing	59	42	77	61	52	50	66	64	72	46
GAGAATCAGTTCATTG	ref_2371_missing	29	38	47	35	34	26	24	29	22	31
AGTGCAGATTCGTATC	ref_2371_missing	102	72	124	110	107	96	113	92	98	83
TCTTGGTCATCCTTCG	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CGTGGCGACGAACTCC	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CCGTGCCAATCAGCGT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
ATAAGCCAATGATCCT	ref_2371_missing	80	84	95	73	77	73	74	74	79	77
AAAATAGGTTTGTTCT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TTGGTGCATCCATATA	ref_2371_missing	85	98	105	99	94	75	108	80	102	67
ACTCCACGGAGGGCCT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CCGTTGCGTAGCGCTG	ref_2371_missing	12	2	5	4	4	5	5	3	6	6
GCCGTCCACCCGCAAC	alt_2371_missing	14	33	21	24	16	19	23	19	25	10
TCTTTTTCCGTCTACA	ref_2371_missing	22	21	26	28	14	20	18	18	18	21
TAGTCTATTTGTAAAA	ref_2371_missing	15	27	18	14	27	25	25	19	22	18
ATTAACTTGCCCACTT	ref_2371_missing	100	92	137	109	106	133	97	84	106	124
TGCCGTCTACCTATGC	ref_2371_missing	12	10	20	26	19	9	22	21	13	14
TAAGGGATCCAACTCT	ref_2371_missing	5	4	4	5	3	5	1	4	2	1
CGGTTGTGGCTCGAAC	ref_2371_missing	23	28	40	39	30	35	29	26	28	27
CTCTGTGGACTTGTCC	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
ATCTTCACCGCATTCT	ref_2371_missing	137	131	166	140	130	130	138	125	146	102
GAACCCAGTCATCGGG	ref_2371_missing	19	23	33	29	26	24	36	26	14	22
TTTCAGGCGTGGTTAC	ref_2371_missing	16	13	10	14	17	4	6	13	15	18
TTTGCTTGGGAACTAT	ref_2371_missing	9	16	13	15	16	10	26	16	35	19
CGTCCAGCGTGTAAGT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
GCTTTGGTTAAACTGG	ref_2371_missing	11	1	11	14	11	9	1	5	3	3
TTGAATATCATTGTTC	ref_2371_missing	26	22	26	18	30	20	31	23	19	10
AGTTATCTGATGGCCT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CTCCGTGAAATTGCTG	ref_2371_missing	1	5	1	3	3	1	3	1	1	0
CAAAGTTCAGGATCTG	alt_2371_missing	38	56	50	50	47	43	48	30	58	42
ATCCGCTGTTGACTCG	ref_2371_missing	44	37	38	53	47	45	53	30	45	39
GGCATAGCTGGGTCGG	ref_2371_missing	21	17	27	18	24	21	16	22	16	13
TTGGGTCTCTCTGCTG	ref_2371_missing	2	8	6	3	4	5	3	6	7	2
ATATCTGGTGATTCCG	ref_2371_missing	28	31	41	29	24	26	36	30	24	38
ACAGGCCGCATACGCA	ref_2371_missing	47	77	63	61	65	46	70	43	75	41
AGCCATTTCGTGGCTA	ref_2371_missing	42	57	50	50	37	38	39	31	40	34
AGGCTATAGAGAGCGA	alt_2371_missing	120	110	127	121	106	93	101	106	118	97
TAAAAGCCGGACACAA	ref_2371_missing	43	36	71	50	46	51	29	48	44	33
CTTTGGTCATCCGGGC	ref_2371_missing	114	136	121	119	148	109	132	96	122	90
CTATTTACTTTTTAGG	ref_2371_missing	33	43	47	52	41	46	50	33	39	43
GTGCTTTACGGTTTTA	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
GACGTGTTCGAACAAT	ref_2371_missing	29	42	37	38	28	32	45	31	36	26
CCAAGCGGCAGATATT	ref_2371_missing	3	3	4	1	4	3	6	2	2	0
GTCGTTGAACCTCGTG	alt_2371_missing	117	82	126	97	98	119	104	108	108	97
TGCGTACTGTTGCACT	ref_2371_missing	11	9	7	13	16	10	7	14	19	13
TAGTTGAATTCGGGAG	ref_2371_missing	23	34	27	34	28	18	25	16	33	25
CGTCTCTGTGTCTAAG	ref_2371_missing	77	75	76	53	92	61	109	56	97	47
GGTAACTCGATTTTAT	ref_2371_missing	8	5	9	8	8	8	6	5	7	5
TGATTTAATGCTTAGG	ref_2371_missing	20	14	17	13	15	5	14	9	22	15
GAAGTGACGGTTTTCG	ref_2371_missing	230	233	271	239	220	249	215	208	243	248
CATTCCATCCGCGGTA	ref_2371_missing	0	3	1	1	4	6	2	1	0	1
CCCATTTGCGAACACG	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TGTTATAGCTAACATT	ref_2371_missing	15	16	18	12	16	11	11	13	15	14
GCAAATTGTCAACAGG	ref_2371_missing	81	96	89	72	80	96	69	62	87	85
TTTGGGTGGTCAGGAT	ref_2371_missing	48	55	46	39	49	39	42	41	43	45
AAGTAATTTGGTTCTA	ref_2371_missing	13	19	30	34	28	23	28	21	19	16
TATATGTCGGCACTTT	ref_2371_missing	93	57	104	98	121	99	93	97	96	81
CTTGGGCAAGTCAGCG	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
AAGTTATCTACGTCCG	ref_2371_missing	83	69	92	74	61	78	80	79	63	73
GTGTGCATTCTACTTC	ref_2371_missing	114	150	131	102	169	124	152	89	181	116
AATTTAACTTTTATGG	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
GCTCTGCGCACATGTA	ref_2371_missing	34	33	37	47	47	31	44	50	51	39
TACTCCATTGACCTGG	ref_2371_missing	13	9	10	13	15	14	10	6	11	8
ATTCACTTGTCGGTTT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CAGCATCTTGTTGACG	ref_2371_missing	20	33	39	33	29	38	23	24	28	27
ATATGCTCTCGTCACG	ref_2371_missing	53	52	62	59	43	45	43	42	56	43
CCCCCGTATGTCATGC	alt_2371_missing	13	124	12	26	129	15	156	10	147	11
CTGGACTTTAGTGCTA	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CGATCAGGTTTCAGCG	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TGGAGCTACTTCGGAG	ref_2371_missing	49	30	46	48	46	39	54	40	42	44
CTATCAGTGTAATAGC	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
GCCGATTGCATGTAAG	ref_2371_missing	90	99	100	92	98	81	91	53	100	81
TGTCCAGTGTGCCCTG	ref_2371_missing	10	6	7	13	8	6	3	7	6	7
TTCTATCAGTAGCGGA	ref_2371_missing	16	13	23	8	11	16	14	21	20	13
GCATCCGTGCAACGTA	ref_2371_missing	12	18	12	14	16	7	12	15	11	16
AAGGTAACAGGGCATA	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
GCAAAGTCGCGACTTT	ref_2371_missing	15	9	11	5	8	6	14	4	7	4
CTGGGGCGAATCACGT	ref_2371_missing	12	9	15	14	11	19	14	11	24	20
GGTTTATATTCTCACG	ref_2371_missing	12	4	13	5	7	3	8	12	3	1
TGTTGCTTGGAACCCG	alt_2371_missing	35	59	66	47	42	39	44	47	56	40
CCATTAAAGTTAATTC	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TCAGAGCGTTTATATG	alt_2371_missing	65	59	97	68	86	73	79	55	83	53
CAAATCAATCTGTGTC	ref_2371_missing	8	2	4	7	12	12	9	11	10	9
GTATAGCTCGTTTGGA	ref_2371_missing	75	81	76	65	71	81	60	72	81	90
TGACAATTACGTTCGA	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CTTTCCGCACTAGCTT	ref_2371_missing	3	2	0	1	2	3	2	1	1	3
CCCCCTGCTACGGCCT	ref_2371_missing	71	86	102	89	77	92	70	77	91	67
CTTTCACTGGCCCAGG	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
CACCTTGATTCACTCT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
ACTGTGGTATATTTGC	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
GACGACTCTCTGACTC	ref_2371_missing	27	31	32	27	25	26	24	33	21	36
TGGATATACCTGCATA	ref_2371_missing	106	77	126	113	106	99	118	103	117	104
TCCGTTACTCTTGGTC	ref_2371_missing	11	8	15	6	13	13	9	13	10	11
GCTAGCTGCGGATACT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TATGCCCTTACCGGGC	ref_2371_missing	51	41	37	40	48	48	47	27	37	36
ATATTTCGAGTGCATC	ref_2371_missing	26	28	40	27	24	22	31	25	31	25
CCACTGCGTGCACTAG	ref_2371_missing	9	13	14	20	23	9	8	15	16	15
CCTTTTTCGTCCAGGT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TAAAGCGTATAGTAAT	ref_2371_missing	39	69	64	43	48	57	68	49	77	38
GTCAGGAATCCCTATC	ref_2371_missing	132	152	171	153	178	153	192	116	182	140
CAACCCACTGCTGGAG	ref_2371_missing	42	63	56	34	61	34	82	31	78	35
AATTTCAATACAAATC	ref_2371_missing	86	69	101	69	58	80	59	75	81	67
AGCTCGCCACTCACGT	ref_2371_missing	46	39	68	41	33	44	46	50	57	45
TCGCTTGGGTTTTCAT	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TTATCTCCCGCTTCTG	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
GGCTGTAAGTCGAACG	ref_2371_missing	260	245	252	211	220	232	238	204	286	218
GTTTTATGCTTCAGAT	ref_2371_missing	18	10	11	11	10	12	16	8	11	12
CTCGCCCCCTTTTTGG	ref_2371_missing	9	28	18	12	28	9	29	17	31	11
GTGACGGTTTGAGGCA	ref_2371_missing	45	40	51	30	41	43	49	37	41	35
AGTATAATGTTTCGAA	ref_2371_missing	2	2	5	3	4	4	2	6	9	0
GGGCCTGCCCACTATA	ref_2371_missing	0	0	0	0	0	0	0	0	0	0
TTTCGCTGGTGCATTC	alt_1218_upstream	7	3	7	3	4	5	5	5	5	1
CATCCTTTCGCATGTC	alt_1218_upstream	23	40	42	29	47	24	54	28	53	34
ATTACAGGCAGTAGTT	alt_1218_upstream	31	52	53	33	48	41	61	30	71	37
CTAAAGCTAATATAAA	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
GTAGAACCATATGCCT	alt_1218_upstream	30	51	47	39	50	40	62	22	55	35
GAGTAGGACCGTAATA	alt_1218_upstream	32	58	42	44	67	32	66	34	59	35
AATTGCAGTATCATTG	alt_1218_upstream	243	366	308	259	389	237	400	225	429	255
TTCGACATTTAAGGCC	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
CGATTCGGTTTGGAGT	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
AAGACTCCACATATTG	alt_1218_upstream	34	45	48	56	54	37	44	31	60	25
ACTTTACTCGCGTGTC	alt_1218_upstream	49	74	57	38	84	39	77	38	79	33
GGTTTATTGGCCACCC	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCATGGAAGCCTC	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTTCAAGCGATC	alt_1218_upstream	13	25	11	16	23	14	23	8	17	6
CAGCATCAAATCGGCG	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
GCACTTTCTTATATAA	alt_1218_upstream	12	11	7	8	6	4	12	8	6	10
CATTTGTATATCTTCC	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTAATCACTGTGT	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
CGATGTTCGCAACGTT	alt_1218_upstream	24	45	40	39	53	44	48	39	59	27
CTTTGGTGTTGATAGC	alt_1218_upstream	18	32	27	34	44	25	39	23	40	15
TTGGAGGGGGTTTTCA	alt_1218_upstream	3	1	2	6	2	5	3	2	7	4
TCTATCTCTCCACTGC	alt_1218_upstream	11	45	34	11	30	13	27	23	30	14
TTCGATTTTTTAATAC	alt_1218_upstream	85	115	89	58	116	50	108	71	116	76
TGGAAGAGTTGGTCTA	alt_1218_upstream	4	5	7	2	4	1	4	0	6	4
CTACTAATGTTAAAAT	alt_1218_upstream	22	26	27	15	30	24	24	15	29	14
TGGTTGAAATCACGCG	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCTCATGGTTAAA	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
GGAAACGACGTTGCGC	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCGGCTGCATAGG	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
ATAATATTATGTGGCC	alt_1218_upstream	0	0	0	0	1	1	1	0	0	0
CGTAGCTTAGTCATAT	alt_1218_upstream	38	56	43	36	60	31	65	36	88	25
GGCTCGTGAATGCGTT	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAACCAAATATCA	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTCTGTCTTTGTG	alt_1218_upstream	12	23	20	13	22	22	23	26	26	12
TTAGCTCATTTCAAAT	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
GATCCGGGTGTTTAAC	alt_1218_upstream	1	6	7	4	3	6	13	10	8	5
CTTAAATAATACGGCT	alt_1218_upstream	30	36	29	21	29	19	24	17	34	17
TCCGTAGGTCGATTTC	alt_1218_upstream	4	1	1	0	3	0	4	1	1	0
TGGGATAGGGTGTTTC	alt_1218_upstream	34	43	51	35	63	53	66	41	51	29
CGGAGAACGCGCACTT	alt_1218_upstream	4	10	10	13	12	13	12	17	15	9
TGGTAACCAAATGTCA	alt_1218_upstream	28	25	30	31	37	20	31	31	30	22
TAGTGCTCGATTCAAA	alt_1218_upstream	6	14	13	11	16	7	11	6	17	8
AAATATCCATTACTAA	ref_1218_upstream	51	72	59	47	57	47	50	53	82	46
CTTCTACTGCCACGAC	ref_1218_upstream	14	11	9	12	19	12	14	14	13	16
TATACCACGTGTGTAG	alt_1218_upstream	14	18	18	16	15	15	23	23	14	12
TTGCCGATCGCGGGGC	alt_1218_upstream	0	1	2	0	1	0	2	1	0	0
CTGCGGAATTAACTAT	alt_1218_upstream	7	14	10	21	14	14	15	13	13	5
TGTAAGGAATTTGAGT	alt_1218_upstream	13	26	15	28	33	19	25	21	23	16
TCTAATTCATCATCAG	alt_1218_upstream	10	14	23	17	29	12	21	12	23	13
TAATTAGCTTTTCATA	alt_1218_upstream	41	54	47	35	58	49	59	42	66	30
ACGTTGGCTGGGTGTA	alt_1218_upstream	60	76	75	55	77	50	83	57	89	53
ACGAATCACTCTGACC	ref_1218_upstream	60	69	50	63	93	44	83	37	97	38
CCAAGGCCCATATGTA	alt_1218_upstream	1	1	1	0	3	0	4	2	3	2
GACACAGATTCCGGTG	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTACGACGTATTC	ref_1218_upstream	16	27	21	16	32	19	26	12	34	11
TTTCTACTGACAATTC	alt_1218_upstream	10	24	9	14	22	6	20	13	23	7
CTCAAGTTGATGAGGA	alt_1218_upstream	36	80	62	52	72	43	69	46	66	40
TCATGTGGTCTTTCCT	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
CATGGTTAGCTTTTAA	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCGTATTGCTGAT	alt_1218_upstream	69	93	101	64	106	73	98	72	123	62
TATACCATCATTTGTT	alt_1218_upstream	11	12	20	20	22	18	26	13	30	16
GTAGCCTTACTATAAC	alt_1218_upstream	34	60	27	29	39	29	57	28	54	26
GAATATGTGCCTCCAC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TTACCTATTATTTGTT	alt_1218_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTGCAAGGTTTTG	alt_1218_upstream	47	58	49	31	55	27	78	43	92	28
TACTACGTAGTCTTTA	alt_1218_upstream	27	44	54	35	67	22	69	27	86	23
GCAAAATTCCTTCTGC	alt_1218_upstream	30	29	23	14	30	20	34	15	41	16
ATGTGGGCCTAGCTCT	alt_1218_upstream	17	29	33	17	24	19	36	14	21	19
ATGCGTCATGCGACTC	alt_1218_upstream	16	24	11	16	20	21	20	18	21	19
GCTGCACGCCAGGTCT	alt_1218_upstream	6	11	4	1	8	1	5	3	8	2
CAGACGGCATGCAACT	alt_1218_upstream	0	0	3	0	0	0	0	1	1	0
GGCTCATCATCGTCCT	alt_1218_upstream	12	15	23	17	16	19	19	14	14	7
TACGTTGCCTGAAAAA	alt_1218_upstream	5	10	8	1	6	2	4	4	6	1
AACACGGCTTCAACAC	alt_1218_upstream	18	21	24	23	28	15	29	21	30	27
TAACCTGTGTGCACCT	ref_1218_upstream	240	344	290	243	331	260	376	254	401	194
AGAGAGTCCCGTAATC	alt_1218_upstream	13	34	29	12	30	20	30	19	20	31
CCTAGGCACTGATTGA	ref_3516_reverse	71	46	79	73	37	63	40	73	46	78
GGGGATGCGTGTTTCA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
TATGAATTGACCCGTT	ref_3516_reverse	72	23	84	85	36	67	32	56	44	67
ACTGGTTTGGGAGGCT	ref_3516_reverse	85	33	73	75	35	75	21	76	39	46
TGCGTCGCCGAATCAG	ref_3516_reverse	53	22	52	62	32	46	39	55	30	49
GATCGAGACGCTTATA	ref_3516_reverse	16	10	35	20	6	23	8	17	9	22
CCCAACTGCGTCACTA	ref_3516_reverse	70	39	101	94	36	65	33	84	31	76
GCGACCCAGAATACAC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CTTACGTTGGTTGACT	ref_3516_reverse	42	29	56	43	30	36	35	33	26	36
CTTTAGTCTATATGAG	ref_3516_reverse	8	0	9	9	1	8	6	2	4	5
GGTAGTCGTCGGCACA	ref_3516_reverse	148	66	188	172	67	185	79	173	82	147
CCTCCATCGAATTAGT	ref_3516_reverse	101	87	107	93	92	74	101	71	85	66
ATTACGCTCAATCCCG	ref_3516_reverse	29	19	54	36	27	39	12	35	24	38
TCCTCCCTGCCGGAGA	ref_3516_reverse	61	15	71	71	24	49	18	69	33	43
GTTAAGGTCGGCTCAT	ref_3516_reverse	49	16	62	47	8	46	15	34	15	35
TGGTCCAGGTGGTAAC	ref_3516_reverse	20	5	34	35	14	29	13	33	17	19
GTAAAGCTTGTAGCGT	ref_3516_reverse	53	29	72	50	17	53	30	43	30	49
TTATGTAACACACCTC	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
CCCAATTGTCCATAGC	ref_3516_reverse	18	18	35	35	9	28	6	16	12	20
TTTCGGTAGTGTTACA	ref_3516_reverse	32	12	31	18	14	26	8	27	8	24
GTTCCCACGTCTTAGC	ref_3516_reverse	13	10	15	11	16	9	14	17	8	14
ACTCTACCGCCCACGG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCCACACAGTTGC	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGGCCTCCAACTT	ref_3516_reverse	13	6	15	9	9	19	7	12	4	8
GCACGGTAGCCAAAAT	ref_3516_reverse	24	12	41	37	11	20	13	30	8	27
AAAGGGCTGCCATGTC	ref_3516_reverse	29	13	30	34	12	33	11	31	12	26
TAATGCGCATCAAGCG	ref_3516_reverse	112	44	140	98	70	106	56	101	45	110
AAATCGTCCCTCGGTT	ref_3516_reverse	63	20	62	51	26	58	24	49	33	48
CGTTCTTTGACGAGAA	ref_3516_reverse	185	61	188	174	79	154	60	159	63	152
TGCGGCACTGACCTGA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
CACCGCTCTGTTAACT	ref_3516_reverse	75	37	97	77	28	96	42	95	42	85
CCGTATTAGTGATTGA	ref_3516_reverse	9	5	11	6	15	8	9	1	9	6
GGGAGGTGGCCTATTG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTTTTGCCTTTCC	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCTGGGTCTTTCG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
AGACGAAACTGCAGGT	ref_3516_reverse	262	104	340	330	112	286	106	268	102	221
TTCACCATCTAGTAAC	ref_3516_reverse	45	13	53	58	29	37	28	40	21	27
GAACTCACGTTATTGT	ref_3516_reverse	64	29	85	72	24	40	21	56	29	57
TAGCATTACTGTATCG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ACGTGCATACCTGTAT	ref_3516_reverse	26	16	37	28	13	22	14	34	24	26
ACAAGCGCCTCCTGCA	ref_3516_reverse	380	158	450	368	144	363	173	334	171	345
TCGGCCTGCATTTTCT	ref_3516_reverse	179	61	195	166	66	170	76	155	76	161
TTTAGGATTTCTATAG	ref_3516_reverse	77	37	95	57	32	63	34	57	22	80
GTCATCTTCTCTATTC	ref_3516_reverse	71	29	100	93	25	75	35	85	38	74
GTGTTCCGCTAACCGG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCGCGTAATTAGC	ref_3516_reverse	15	5	5	13	5	10	2	14	5	8
GAACTCTTTTAAACCC	ref_3516_reverse	24	5	29	27	16	12	19	22	8	20
GTACCCCAAAGAGCAA	ref_3516_reverse	50	31	73	57	26	69	25	44	21	47
CTTCACGCCCGTTTGG	ref_3516_reverse	386	147	425	365	185	406	173	329	142	334
TGATTTCTGTGGCCCC	ref_3516_reverse	37	16	45	46	16	25	17	38	11	32
TGTCTAAGATCCAGTT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
CATCGGCCTTGGAACT	ref_3516_reverse	41	28	62	46	38	48	30	45	16	41
TGTATGGTAGGTACCG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGTATGACATGAT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTATATTAGACGC	ref_3516_reverse	76	48	129	73	45	101	34	94	47	82
GTTACTCGCCATATTA	ref_3516_reverse	790	344	986	832	315	779	336	796	355	707
GACAAGTCTCCCTTCA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
TATAAGTTTTTTCTAC	ref_3516_reverse	237	108	301	268	129	217	113	233	105	229
CTTTGGAACTCTCTAC	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GGTAATACCGCCCGGG	ref_3516_reverse	76	29	78	96	33	43	41	51	35	61
TCTGTTCTGCTCTTAC	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGACAACGGTTAA	ref_3516_reverse	10	2	17	9	5	6	10	4	7	19
ATAAAGCATTTATCCG	ref_3516_reverse	60	35	95	88	15	76	44	59	25	47
TGTGTTGATTAACCGC	ref_3516_reverse	116	42	126	121	44	99	35	113	42	140
TTTAATAGGTGCCAAG	ref_3516_reverse	21	15	34	22	10	15	12	21	7	19
AGATGGATAAAGCCAT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ATACTTTGGATTGTCA	ref_3516_reverse	135	64	164	120	56	112	53	119	76	118
CTGGCATTAGCATTAG	ref_3516_reverse	87	23	125	102	53	87	45	102	38	78
GATTTTTAAGATGGGT	ref_3516_reverse	28	14	31	26	10	26	9	27	7	23
CCTCCGTGTACAATGA	ref_3516_reverse	150	65	133	123	50	104	65	112	66	100
ATGATAAGTTACGGCA	ref_3516_reverse	126	40	168	106	44	120	53	97	58	91
CGGTTTGCGCAACTGC	ref_3516_reverse	23	11	27	26	11	16	10	13	17	17
GTAGAGTTGATATAAT	ref_3516_reverse	49	27	71	53	42	70	26	69	28	47
CACCTCCATCCCCTCT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCCCGTTTAGAC	ref_3516_reverse	107	53	177	137	57	126	80	129	67	128
CGGGTCATTCACCCCC	ref_3516_reverse	73	29	95	71	35	67	23	89	41	71
AATTAATCTCCCGGCT	ref_3516_reverse	48	22	63	66	30	37	28	36	24	48
CTCGTTATAGTGCAAA	ref_3516_reverse	27	15	37	38	15	32	20	34	22	25
TGTATCACTCCATTGT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGATTGTCCCTCT	ref_3516_reverse	66	21	86	80	17	77	29	60	26	69
TCGGTGGGCATTCAGT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTTTTACCTGGAG	ref_3516_reverse	34	12	41	31	8	29	20	32	21	32
TGGTTGATGTTATGAC	ref_3516_reverse	112	50	148	126	58	109	74	102	49	113
TTTATTTGGCTCTTCT	ref_3516_reverse	69	20	71	82	24	74	26	54	28	54
TCTTCGTACTCTCCTA	ref_3516_reverse	21	12	29	16	20	15	15	19	21	23
TATCGATTTTTTCCCA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCATGATCTGAGC	ref_3516_reverse	64	19	77	77	32	63	36	57	32	49
TGGAATAAGTTTCTTA	ref_3516_reverse	15	9	32	16	9	15	6	18	3	14
AGGCTGAAATAGACAT	ref_3516_reverse	282	125	331	262	127	247	116	257	115	226
TATGATAGAGTACAAC	ref_3516_reverse	37	13	38	31	12	22	16	34	16	37
CGTTCCAGGCACTCAA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCTGACCTATAGG	ref_3516_reverse	35	18	44	40	20	36	18	28	33	31
GTAAATGTAATACTCA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
TCATCCACAGTTCTGG	ref_3516_reverse	127	56	157	140	69	108	77	139	88	120
TGGCTGCTATATCCCC	ref_3516_reverse	13	6	30	14	9	26	15	15	9	21
GATGTTTAGCTCAAGA	ref_3516_reverse	98	59	155	108	47	106	59	114	58	124
CAGTTAACCCGCATAC	ref_3516_reverse	43	47	72	87	42	69	56	59	59	54
TTTTCGTGTTCTGCGA	ref_3516_reverse	33	16	60	38	16	33	23	33	25	43
CTAGGAAAACATTAGT	ref_3516_reverse	11	10	20	9	3	15	3	14	4	5
ATCATCGCTATAAGTT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGTTCAATTCACA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGCAGTTCCAGGA	ref_3516_reverse	151	89	176	137	71	142	100	117	75	110
TTCAGGGCTCTGACTA	ref_3516_reverse	53	29	79	64	23	58	36	39	21	41
AGCTCCTTTGGTGATT	ref_3516_reverse	282	101	329	261	119	249	97	230	107	215
ATGCTGGTAGGATAAT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTAAATCAGCGTA	ref_3516_reverse	60	29	106	70	15	72	27	60	29	60
CGCTGCGAGGACGTGT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
AGTATCTTAACCCCCC	ref_3516_reverse	83	43	114	92	29	84	36	97	39	75
ATGTATAGTCCTGAAA	ref_3516_reverse	40	12	43	23	11	42	27	25	11	32
GGGTAAACAGCATTAC	ref_3516_reverse	31	15	41	31	14	46	18	41	14	29
TTTCGGTATCCTACGA	ref_3516_reverse	77	32	87	73	22	48	19	63	34	66
ATGGTTAGCGGGTACT	ref_3516_reverse	102	35	167	144	49	115	60	117	56	113
CTCTACTCCACAGTGG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCAGGGGTGTTCT	ref_3516_reverse	6	1	9	4	3	9	11	6	9	2
AGTAGTCGTAAAGACC	ref_3516_reverse	299	95	360	273	104	251	109	238	132	265
CGTAACCTGTAATTGG	ref_3516_reverse	13	5	21	23	11	17	9	21	15	18
TATAGCATGCAACACG	ref_3516_reverse	68	27	63	74	18	66	31	30	33	40
GCTTATATTTTTTATT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTCAACTGCGCAT	ref_3516_reverse	46	20	62	37	26	53	29	53	28	48
GCTGGAACTTGACTCC	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGCGCTGTCCTAA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
ATCAACACTTGATTTG	ref_3516_reverse	17	4	13	8	4	5	4	5	3	7
TATCGTGTCTTCGCTC	ref_3516_reverse	5	2	4	7	1	5	3	4	2	7
GATGAGTGGGTGTCTT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
TTCACGACATGTCAGA	ref_3516_reverse	525	214	673	526	205	544	200	443	221	438
AGGGGTTCGAATGGCT	ref_3516_reverse	42	21	73	60	24	58	30	52	32	61
TGTTGCATCTGTCATG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
TATTTAGCAGTACCCA	ref_3516_reverse	59	21	63	45	13	43	18	44	21	43
ATCACGTCAATTAGGG	ref_3516_reverse	161	80	153	126	46	138	63	104	58	139
TGCTTTAGATCGGATT	ref_3516_reverse	104	37	90	101	40	90	36	90	47	84
AAGTTCGCCGTGCAGC	ref_3516_reverse	253	121	307	244	112	229	127	219	126	244
TCCTCGTTGATTCTAA	ref_3516_reverse	369	134	367	323	146	295	139	310	157	281
CTTCGTTCCGCCCACG	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGTGTTTTTAGCA	ref_3516_reverse	65	35	83	93	44	70	36	72	37	71
CGGCATGTCTAATCTG	ref_3516_reverse	74	33	75	65	36	51	23	64	29	50
TCATTAGCTGCCCCTC	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGAGTTTCTGCTC	ref_3516_reverse	43	30	56	40	23	46	20	36	23	34
ACTAGATGACCTCATG	ref_3516_reverse	32	15	44	32	11	35	10	27	15	39
TGAGTGCTTTCTTCTT	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GGATAAAGATCAACGA	ref_3516_reverse	266	115	327	267	98	219	81	235	92	214
GCCCTTGTCCATCAGA	ref_3516_reverse	68	22	65	60	33	52	32	56	28	48
AAGTCTTGGATTGAGT	ref_3516_reverse	103	40	102	93	40	69	40	76	41	69
CTTATAAGTCATGAGC	ref_3516_reverse	48	28	61	45	22	44	16	36	20	47
TACTATTGTACCGCCA	ref_3516_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGCCAGTACAGGT	ref_1700_RC	13	9	13	17	18	13	11	18	16	14
ACTTTACACCGTATTT	alt_1700_RC	12	15	33	26	22	18	27	13	11	17
CGCGGAATTTCCGTGC	ref_1700_RC	72	28	68	52	50	39	55	36	54	58
CCCCCGGCATGGGGAC	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
CAATGTTTCCCCCCGG	ref_1700_RC	2	5	2	4	10	6	5	3	2	8
TGCAGGTGGAAATAGA	ref_1700_RC	1	0	4	4	3	2	3	1	6	4
GCTTTAACCAGTAATC	ref_1700_RC	26	19	47	32	29	31	44	28	42	27
TTGGGGTAACTGGACA	ref_1700_RC	29	33	47	39	46	32	56	57	36	41
GCCAACTTATGATGAA	ref_1700_RC	12	19	23	15	20	37	21	20	24	21
AGACAGCTCGAAAGTT	ref_1700_RC	15	29	19	30	25	16	32	27	20	16
ATCATCCTAACCATAT	ref_1700_RC	72	59	94	72	78	58	65	78	80	54
AGAGGTTGTTTTATAT	alt_1700_RC	7	16	11	9	6	6	10	14	7	10
GGACCCGTAAAAATCA	ref_1700_RC	33	32	33	39	52	32	24	40	38	25
AGACTGGATTCTCACC	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
ACTGCGTACAGCGACC	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
GCACCCATCTGGTAGT	ref_1700_RC	198	258	233	246	278	190	232	211	292	207
GGTCCTCAGAACACGT	ref_1700_RC	4	8	10	5	9	8	5	6	3	10
TAGCTACTAGTATCAT	ref_1700_RC	243	272	348	266	199	261	272	205	239	203
ATACCGCTCGTAAACC	alt_1700_RC	54	47	64	29	54	40	59	37	41	45
AATTTCGCTGCGTCCG	ref_1700_RC	8	7	4	5	2	5	9	3	7	7
CCTCTTGATCCGGACG	ref_1700_RC	34	51	42	42	46	36	55	40	56	43
TCAAGGTGGTATAGTA	ref_1700_RC	54	62	89	57	76	44	60	84	68	52
TAGGTGTCCTTCCGAA	ref_1700_RC	21	11	13	14	5	16	15	23	13	13
TTCAGGTTATACAATT	ref_1700_RC	9	15	21	15	9	17	20	17	25	10
ACGCAGACTTCACCCA	ref_1700_RC	278	229	311	286	228	278	254	280	273	280
TTCTTTGCCTGGGCGT	ref_1700_RC	8	4	8	12	6	11	3	17	6	8
TGCTACCGCGCATCTT	ref_1700_RC	208	197	261	189	146	183	239	151	225	142
GTCGTCCATTTGAATG	ref_1700_RC	20	19	28	32	24	24	20	22	19	17
ACAGTGTTACGTCTTT	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
TTATGTGAACCCAATT	ref_1700_RC	15	14	18	7	7	16	4	12	14	18
CAGATCATTGTTTTGC	ref_1700_RC	7	10	12	9	9	11	13	6	11	11
CTTATGACTGTCATTG	ref_1700_RC	21	37	29	24	28	29	30	30	24	27
CGGGTTAATACGGTAG	ref_1700_RC	13	7	13	20	3	10	9	13	9	17
CATAATAAACATATTG	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
ATTGGTGTTTTTGATA	ref_1700_RC	20	30	19	16	26	18	27	22	23	26
TGGGTTGTGGATCTTG	ref_1700_RC	27	25	40	35	33	26	30	40	37	28
GAGTAGACTATATCTA	ref_1700_RC	12	14	9	15	13	9	18	20	11	7
CATTGTATACCATTAA	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
GATCCTCAGATACGCT	alt_1700_RC	44	41	72	45	56	45	48	39	43	54
GATTCAGGTGGGGCGT	ref_1700_RC	6	6	13	14	10	14	12	10	4	9
TCGCGATTTACTTTTG	ref_1700_RC	26	34	34	30	29	21	26	33	38	28
CCTGCGAAGTTAAAGT	ref_1700_RC	2	1	1	0	0	2	3	1	2	1
GGTACGTGGCTGGCCT	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
GTTCTCTATGATGTGG	ref_1700_RC	70	83	104	71	104	66	76	67	102	63
TGCTCCGGTCTCCCCT	ref_1700_RC	11	14	5	13	12	13	19	6	12	3
CTTTCTGGACTTCGTA	ref_1700_RC	58	66	75	54	75	70	76	66	78	59
GTGGATCCCTCTGGGG	ref_1700_RC	6	5	19	14	10	8	11	5	8	8
CTGGAGAATCCCCATT	ref_1700_RC	50	40	51	65	50	36	44	46	52	38
CTCCTCGTTGGAGTCA	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
GGTATGAAAGATTCCC	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
GTCGTTTTGACGGGCT	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
ACGCAGAAACAACCAG	alt_1700_RC	10	5	8	8	2	9	15	14	3	5
CACTGGCCCTAGGTTT	ref_1700_RC	11	12	17	18	7	9	12	11	6	9
GCCGCTCTAGGCAAGT	ref_1700_RC	0	10	6	5	5	1	3	2	4	2
CCCAGGGAGCTGGAGA	ref_1700_RC	21	30	25	24	29	33	33	22	20	33
TCTACTGGAGCCTTTT	ref_1700_RC	24	48	37	39	54	30	33	32	54	37
TATTTGTTGCCCGCAT	ref_1700_RC	22	14	24	22	14	16	19	20	16	16
CTGTTAGTTTAGAAAG	ref_1700_RC	9	15	13	16	11	8	6	14	11	9
GGTCCCGGGTCGTCGT	ref_1700_RC	28	23	24	27	14	17	20	21	19	14
TTGCTCATAGCCCACG	ref_1700_RC	10	14	17	5	11	12	5	10	8	6
TTACTAGTACCGGTGT	ref_1700_RC	33	49	55	42	51	43	46	23	41	39
TAACACGAGGGGATCG	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
CGCCAGTCAGTGACCA	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
AATGAAAATTTGGGCT	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
CCCGTACTATGGTCGA	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
AGTATAAGCGCCGGTC	ref_1700_RC	28	21	28	37	21	35	28	27	34	30
TCATCGAAACACTTGG	ref_1700_RC	0	0	0	0	0	0	0	0	0	0
ATAATCTATATGCGGC	ref_1700_RC	64	65	67	59	46	61	52	67	56	57
TTTAAGATGATGGGAT	ref_1700_RC	32	26	31	35	17	23	22	30	30	16
GAGGGCTTTGCCCGTC	ref_1700_RC	14	14	9	7	18	13	15	6	11	7
CTAAGGTTGAACTTTG	ref_1700_RC	64	48	64	55	59	63	66	57	76	47
GATACGTGAATCATCT	alt_5553_fdr	45	54	67	68	62	63	47	54	40	63
TATCGTCTCGTTGAAT	ref_5553_fdr	49	57	58	47	48	45	42	42	55	35
GTAACACGAGTAGGGC	alt_5553_fdr	32	46	28	29	55	15	69	22	54	30
TGGCCTATATGCTATA	alt_5553_fdr	14	18	27	13	20	14	20	15	15	15
TCTCGGTTTTGCGGTT	alt_5553_fdr	37	44	49	37	46	28	53	34	37	29
CATATTCATAGAGTGC	alt_5553_fdr	93	88	119	110	91	93	90	94	93	82
GCTAATATGCGAGATA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGTTTGTGTAGCA	alt_5553_fdr	0	0	0	0	0	1	0	0	0	1
CTTGCTTCATTGTACA	alt_5553_fdr	14	18	11	8	15	12	25	20	25	16
GTTATTTGGGTATTAA	alt_5553_fdr	51	59	87	74	60	74	70	60	73	64
TCGTTAGTTAGCCATT	alt_5553_fdr	81	61	74	59	76	60	74	79	64	50
ATTCTCAGAACTAATA	alt_5553_fdr	1	0	0	0	0	0	0	0	0	0
CCACAGGAGGGTGCAT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GCTATCTTTGGATCTC	alt_5553_fdr	26	25	17	15	22	11	28	16	20	21
GGAAAGTTAAAGAACC	alt_5553_fdr	180	167	212	209	205	178	182	176	193	171
TGCCTTTCCCGGCTCG	alt_5553_fdr	11	4	5	7	3	5	10	2	5	4
CTGGTACCTATGGTGG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTCCTCGGTCGCC	alt_5553_fdr	41	47	53	50	41	44	57	30	74	29
CGTTTTAAACTTGCAC	alt_5553_fdr	16	10	20	11	16	16	13	16	17	18
CAGCGATTAAAGGCTA	alt_5553_fdr	23	34	35	25	20	30	35	17	40	22
CTTAGTGTTGTTTTGC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCCTGATTATTG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCAAACTAAGATT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTCCGCGGCCTGC	alt_5553_fdr	93	87	135	136	80	124	100	87	88	100
CATGGTTAGTTTTGTA	alt_5553_fdr	80	64	56	44	57	64	44	52	55	42
GTTGCCTGTATGGTCC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCACACATTGGAGCGC	alt_5553_fdr	16	16	15	16	21	15	22	20	22	20
TTATACGGTCAGTGTG	alt_5553_fdr	29	32	30	34	47	41	50	37	40	27
CGAATTTCGTACACTA	ref_5553_fdr	27	25	41	36	27	24	19	32	39	28
TCTCTCTTGCCATTTC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GTGGAAGCCTCTCCGT	alt_5553_fdr	12	8	13	8	8	7	9	10	19	6
TAGTTCCTCACTGTCC	alt_5553_fdr	49	46	55	55	67	39	55	52	58	44
CGGATTACTTTTTATT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGGAAGTATTCAC	alt_5553_fdr	21	29	24	26	21	18	25	17	20	15
TGTTATGATCCATCCG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTGCGTCCATCTA	alt_5553_fdr	256	208	287	218	190	199	226	211	277	257
GTTCTGTCTTCCCATG	alt_5553_fdr	48	32	55	58	26	38	22	37	32	35
CACCCGTACGCCGTAA	alt_5553_fdr	25	10	21	21	12	19	19	21	21	16
CTTCATGATTAGATCA	alt_5553_fdr	34	31	35	23	22	24	29	22	28	21
TTCTCACGAGATCTTA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGGAGTCGCCCGTACG	alt_5553_fdr	87	86	103	110	70	92	70	91	103	74
CGCCATTCCTTAACCG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CACCTTGAGCAGGTGC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTTATATGGCTAG	alt_5553_fdr	0	1	4	2	0	3	1	2	6	2
CTGGCAGTAGTGGGAG	alt_5553_fdr	29	35	50	39	32	46	36	39	42	40
TTAGAAATTATGTGCT	alt_5553_fdr	39	59	53	64	70	48	64	45	69	46
AGAGCGGAATTAACGG	alt_5553_fdr	22	10	21	14	11	15	4	18	14	13
TCTCACTCACGGGTGG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGCGAGCTCTCAGTTT	alt_5553_fdr	59	54	82	40	51	55	43	32	51	33
TAGACGTTGCCTTACT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GCATGTCGCCTGCGCA	alt_5553_fdr	12	9	13	11	7	14	14	10	8	12
GTTCTGCTTCGTTTCT	alt_5553_fdr	156	166	196	199	166	159	164	157	168	152
GTAGAGGTCCTCATAT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTTGCGGTGTCAT	alt_5553_fdr	11	13	11	5	7	6	2	3	6	5
ATATGCGCCGCCTATA	alt_5553_fdr	19	19	22	14	30	16	11	12	22	13
AGACAACCGGATGCTT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCACCTCTGTATG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CATCTCGTGTCCTGGA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TTTACGGGATTAGGTC	alt_5553_fdr	18	20	26	23	16	16	23	13	17	17
GTGCAAGCTGGTTTAT	alt_5553_fdr	45	47	66	59	54	51	43	54	52	42
GCCGGCAATTAACAAG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGTACTATGTACGTTT	alt_5553_fdr	37	39	49	60	50	46	45	47	55	41
CGCGAAGGCCCTGAAC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGATAGTTTACGACCG	alt_5553_fdr	65	72	84	72	71	54	57	59	70	48
AACCCAACAGGATGCA	alt_5553_fdr	99	83	124	93	86	111	76	80	105	93
TTAAGGCCAGGAATGA	alt_5553_fdr	13	11	19	9	9	9	19	10	9	16
TACTGTAAACTCTTAA	alt_5553_fdr	48	39	60	51	41	41	48	55	42	41
CCGGCCAAAAGGATAC	ref_5553_fdr	124	180	159	141	211	105	202	121	211	126
GACTCGATACGCCCAC	alt_5553_fdr	118	106	122	119	115	107	116	115	109	97
GTGAGTGTCTTTGGGC	alt_5553_fdr	3	2	1	0	5	1	2	1	6	0
CTTCTGTGTCAGTTAC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GAAGTGAGTTACCCGC	alt_5553_fdr	6	10	5	3	10	8	2	8	2	5
TGTTTCATGTCGTCCT	alt_5553_fdr	107	71	113	85	40	98	63	61	92	80
TATAAGCGGGTTGCAC	alt_5553_fdr	44	53	46	59	54	50	53	36	66	42
CTGGAGACTGAGGGTG	alt_5553_fdr	56	53	65	66	37	43	48	61	48	30
CTATTAGGTATATGTA	ref_5553_fdr	11	21	23	19	21	22	21	15	26	4
CAACAACGCTTCTAGC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GCACGTATCTGACATG	alt_5553_fdr	8	8	17	11	7	9	3	6	10	9
AGAAGTTTTTGGTACG	alt_5553_fdr	11	9	11	11	9	8	7	2	10	12
GCGCATTATATTCTTG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGTTAGTCTTTTCGCA	ref_5553_fdr	25	30	49	36	28	32	27	34	32	17
ACTGCGAGATATCCGA	alt_5553_fdr	8	23	9	13	7	19	6	7	13	8
ATAAGCCTGGTGTACA	alt_5553_fdr	34	27	39	30	27	22	24	19	30	17
GGCTTGGGTTGGTATT	alt_5553_fdr	45	33	49	37	25	33	45	41	56	23
TCCGTCAACTTTATTC	alt_5553_fdr	24	16	34	23	24	29	20	22	21	23
TTTAGTCGGAAATAAG	alt_5553_fdr	22	15	25	27	22	25	20	14	29	17
GTATAACCAAAACCGA	alt_5553_fdr	49	35	32	37	46	33	40	28	32	32
TTAGCCATTGACATAG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GCTGAGCCGACCCATA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
ACAGATTCCTTGCGCC	alt_5553_fdr	2	7	5	3	6	5	4	2	1	5
ATATAGGTGGCCGCGG	alt_5553_fdr	4	5	11	17	9	8	13	9	11	10
AATTACCGCGACTTTC	alt_5553_fdr	113	96	113	112	113	103	91	107	105	116
ATACGTGCAAGCTTTA	alt_5553_fdr	73	74	103	86	97	80	93	89	99	82
AAATTTATTGGGAGGG	alt_5553_fdr	49	58	56	58	38	40	48	47	60	58
CAGTGGAAGAATTTTG	alt_5553_fdr	49	49	50	47	48	29	55	45	45	43
ACTTCTGCGTGCTCCG	alt_5553_fdr	60	92	99	79	78	68	79	69	87	65
CGTTGGTCCACCGTGT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGCCGTGTACAAA	alt_5553_fdr	55	34	47	39	46	45	46	48	38	38
TGGAGTCACCCATTGG	alt_5553_fdr	15	15	13	8	24	12	15	15	16	12
GATAGAGATAGCTATT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTAGACCTACATT	alt_5553_fdr	50	44	66	46	53	47	38	41	66	38
AAAATGCACGTGTGAA	alt_5553_fdr	11	23	11	12	19	14	10	15	16	11
GAAGCGCCGAATACTA	alt_5553_fdr	10	4	7	4	4	7	2	3	3	4
TCCCACGGAGAACGGA	alt_5553_fdr	54	23	61	52	42	48	39	37	48	53
AACTTTACTCTATCTT	alt_5553_fdr	31	24	38	24	21	23	32	16	26	29
CTGATCTAGATCTGCG	alt_5553_fdr	15	26	19	24	22	15	23	11	10	12
CAAGTCCATCCCTAGG	alt_5553_fdr	66	73	109	77	83	94	79	62	69	61
AGGTTATTCCCGGTGA	alt_5553_fdr	22	23	28	23	13	18	21	21	14	23
GCGATTGTATTTAGGG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
AGTGATAGACGGCATC	alt_5553_fdr	105	81	106	98	110	100	94	82	90	92
AAGATCTGGAAGGTAA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCGCGTGCGTGCT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGGATGTTATTTA	alt_5553_fdr	72	45	82	69	53	72	79	68	73	77
GCCGGCTCATGGAAGG	alt_5553_fdr	15	17	20	9	7	16	18	11	11	10
CGAGTCACGACATACC	alt_5553_fdr	50	39	68	70	30	45	28	59	43	50
TTCGGACGCCGCCATC	alt_5553_fdr	26	21	44	18	23	22	15	33	17	23
AGAGTACTCTTAGCTA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGGTAAAGTTACGCTG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGCCGTTGCACA	alt_5553_fdr	36	19	35	33	29	29	33	29	40	29
ACCTGGAATCCGATCA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCTATGGCAAGGACCG	alt_5553_fdr	27	23	41	28	20	30	25	31	32	29
CAAGTTGCGGGTAGGC	alt_5553_fdr	35	29	56	29	28	36	35	33	34	30
TGATCACCCTGCCTTA	alt_5553_fdr	20	18	45	33	37	36	29	35	25	48
CCGGCCAAGAGGATAC	alt_5553_fdr	0	0	0	1	0	0	0	0	0	0
CTCTGGGTTGGGGCAC	alt_5553_fdr	21	15	18	21	29	12	12	18	26	17
GAACTGAATTTTACTT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTGAGACGCCAGA	alt_5553_fdr	23	42	48	28	40	42	40	39	51	33
AATTAAGCTCTTAATG	alt_5553_fdr	22	37	43	40	32	34	32	23	21	35
TTATTTTAAATTGTTC	alt_5553_fdr	13	14	13	13	21	10	9	4	14	10
ACGGGGGAGAGAGCTC	alt_5553_fdr	41	48	69	42	67	53	48	60	65	50
CTCTGCATTGTACAGA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GATGCTTGCACATTAC	alt_5553_fdr	5	7	16	11	15	9	19	9	17	10
TCCATGGCTAATTCGT	alt_5553_fdr	61	58	82	61	71	62	48	52	78	53
AGCACATGGATACGCT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TATGTCTTTTACGTGC	alt_5553_fdr	8	8	7	4	12	7	10	6	7	7
GAATTGGGTTCTTCCA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGGAGTTCGTATAAAG	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCCGATTTGTTTC	alt_5553_fdr	38	30	37	28	34	32	22	33	33	37
TAATGGTAGACTCGGC	alt_5553_fdr	14	18	11	11	13	16	14	12	17	15
TGAGTCATTCGGCCCG	alt_5553_fdr	11	17	23	13	12	16	13	19	22	12
CAACTCTCCTAATTCT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGGCGGCACCCGC	alt_5553_fdr	18	21	23	35	36	39	19	35	25	12
ATCCTCTAACCCTGAC	alt_5553_fdr	32	28	35	30	41	34	27	19	37	16
TTGAAAATCCTTTTGC	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTACTACAAGGT	alt_5553_fdr	10	5	10	9	6	8	9	8	13	5
ATGTTGCTGCTATCGC	alt_5553_fdr	57	62	71	57	46	77	59	55	82	51
GCTCGGTCTACTTAGG	alt_5553_fdr	37	31	37	44	24	26	35	29	35	29
ATACCGCCACCCCCTA	alt_5553_fdr	7	11	16	7	14	12	11	12	17	16
AGGGCTGTGCACAGAC	alt_5553_fdr	104	118	129	93	100	93	103	83	99	111
GTGGATATATTCTGCA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCCTTGCCGGACT	alt_5553_fdr	50	49	68	41	44	37	44	37	28	37
CTGATATTTTCTCTTC	alt_5553_fdr	50	48	107	63	58	72	72	65	48	51
TTAATATTTCTTTCCT	alt_5553_fdr	19	13	36	24	13	18	15	16	17	15
CCATTTGACGAGTGTT	alt_5553_fdr	11	18	11	12	19	14	14	15	13	17
ATGACGCTTTCTGTTT	alt_5553_fdr	26	14	26	11	15	21	14	23	25	13
AAATAAGGGCTTTCTG	alt_5553_fdr	39	31	53	48	37	34	27	37	40	30
GTTTGTCTGTTGATTT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGTCCAAGTCTCA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCCTTGTTTACCT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCTATCAGAGTGA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGTTCCGTCGCAA	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTGCTGTCATCTT	alt_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCTTTACAGTTTT	ref_5804_new	44	46	48	34	50	39	59	26	51	28
TACGTTGTATGTGGAA	ref_5804_new	0	0	0	0	0	0	0	0	0	0
ATCCCGGCCGCAAGAC	ref_5804_new	10	12	6	7	18	1	20	2	17	2
ATCCTTTCGTCCGACT	alt_5804_new	40	66	56	36	72	28	72	36	77	41
CACCCATAGTGCTGTG	ref_5804_new	0	0	0	0	0	0	0	0	0	0
GTGCTTCCAGTTTCTA	ref_5804_new	15	28	24	23	26	19	11	21	30	17
TCCTTCCTGGGTAATG	ref_5804_new	13	19	15	24	13	15	15	17	21	11
GTGATGCTACCCTAGT	alt_5804_new	3	2	3	2	3	0	6	2	2	4
GAGGGGGACCAATACC	ref_5804_new	19	18	19	24	17	12	28	21	24	15
CCCTGCTTATGTGGGA	ref_5804_new	20	37	23	19	29	12	36	22	30	11
GAGTCTTCTGAGCATA	ref_5804_new	89	101	95	79	131	88	124	96	122	62
TAACCCCGGTAAAGTG	ref_5804_new	0	0	0	0	0	0	0	0	0	0
ACCACGTATAAATTGG	ref_5804_new	31	38	22	27	33	21	58	24	46	18
TCTGCTTAGGAATTAG	ref_5804_new	0	0	0	0	0	0	0	0	0	0
CCTACCCAGTTTCCAT	ref_5804_new	21	57	22	27	51	19	43	14	56	14
TCCCAGTACTCTACTG	ref_5804_new	6	7	6	13	3	3	8	5	10	6
CACATATCGGGAACAG	ref_5804_new	7	9	25	12	16	16	22	13	20	13
TAACACATCAGAATTG	ref_5804_new	48	40	59	50	43	36	53	45	48	37
TTTACGGTGGCAGAGT	ref_5804_new	0	0	0	0	0	0	0	0	0	0
GATTACGTGATGTTCA	ref_5804_new	0	0	0	0	0	0	0	0	0	0
ACTGACCATAATCTGT	ref_5804_new	26	46	44	34	39	28	49	30	36	36
TCGCTCTAGTTTCTTT	ref_5804_new	0	0	0	0	0	0	0	0	0	0
GGCTCGTTCTTCGGCC	ref_5804_new	0	0	0	0	0	0	0	0	0	0
CGTAGGTTTGTATCAT	ref_5804_new	17	13	17	15	24	11	16	15	14	7
ATTGGTGTTAATTTAA	ref_5804_new	2	4	8	3	5	5	9	6	8	7
TCAGTACTGTCCTTCT	ref_5804_new	48	40	45	33	62	20	49	26	63	32
AGCGTCCCGGTATGCA	ref_5804_new	14	20	15	15	20	10	13	19	14	11
GGGCCATTACTGAGCG	ref_5804_new	2	2	2	1	2	2	2	0	1	1
GGTTCTTGCCGCCATT	ref_5804_new	7	16	11	7	15	3	6	8	6	5
CTGTGGTGTTCGCCGA	ref_5804_new	45	64	49	46	63	49	81	39	70	37
GCGTTTCACCATAACA	ref_5804_new	16	29	22	18	13	12	20	11	22	13
CCATTTTAAACATCTA	alt_5804_new	17	34	30	25	37	22	35	24	28	17
CCGGTTATGTATTACA	ref_5804_new	4	5	3	6	5	2	8	2	1	4
GCGCGAAACTTTCCGA	ref_5804_new	0	0	0	0	0	0	0	0	0	0
GTATCTTCTTCTCGAG	ref_5804_new	1	0	1	0	0	0	1	1	1	0
TGTCCTCGTACCATCT	ref_5804_new	12	16	20	15	27	17	30	18	16	14
CACGGTGTTCGTTGCA	ref_5804_new	15	20	16	13	13	14	11	11	14	10
GGCTGCGGCGCCCTAT	ref_5804_new	48	47	30	30	30	45	42	25	53	26
TGGCTCCCTGACGCTT	ref_5804_new	16	14	11	6	18	10	19	9	15	6
CGGTGCCTCAGTCGGG	ref_5804_new	26	34	20	15	33	16	28	20	28	20
AGGTACTGTCCGACGC	ref_5804_new	0	0	0	0	0	0	0	0	0	0
AGTCGTTTTTTTGCTG	ref_5804_new	25	31	26	22	31	19	30	22	25	17
CGGGAGTTTGAAAATG	ref_5804_new	0	0	0	0	0	0	0	0	0	0
CGCTATAGGAGGAGGA	ref_5804_new	0	0	0	0	0	0	0	0	0	0
ATTCCAGTTTAATGTC	ref_5804_new	17	30	20	15	32	26	23	20	22	13
GGCGTGTTTCTATTCT	ref_5804_new	30	34	32	26	29	19	25	31	32	40
CCGCCCTTAACATCCG	ref_5804_new	26	36	25	36	29	14	31	28	40	16
TTCCAGAACCCTGAAG	ref_5804_new	0	0	0	0	0	0	0	0	0	0
GCCAGTGCTGGTATGT	ref_5804_new	7	15	1	4	12	6	15	6	9	4
TCGCGGTGTTAGCAAA	ref_5804_new	1	1	3	2	4	0	1	0	2	1
TTGATAGATAAATATC	ref_5804_new	0	0	0	0	0	0	0	0	0	0
TGTGCTTAGATCTCTC	ref_5804_new	5	7	7	4	2	4	4	2	5	2
CTCTCCCACGCTGGGG	ref_5804_new	0	1	0	0	2	3	1	1	2	0
CCGTCCCGACACGTTC	ref_5804_new	0	1	2	2	0	0	3	3	0	1
CGGTTGGTTCGTTCTA	ref_5804_new	0	1	0	1	1	1	0	0	0	0
TTTGGGCTGGGTTACA	ref_5804_new	4	4	2	2	9	2	3	2	5	0
CCGCGGTTTTTGAGAA	ref_5804_new	0	0	0	0	0	0	0	0	0	0
AGCGGTCCGGCGCATT	alt_5956_new	138	299	187	146	304	138	262	154	277	142
AAAGTATACTTAGATT	alt_5956_new	63	112	75	71	105	73	108	49	104	76
ATTGTATCTGCCCTAT	alt_5956_new	24	36	35	21	58	18	39	18	44	14
ACTCCGAGCTATTCAA	alt_5956_new	27	36	17	23	23	24	35	11	33	10
CTGCACCGTAATTATA	alt_5956_new	24	72	42	45	72	45	71	38	58	33
TATTATTATTCGTACA	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GTCCCTATTTGGCTGT	alt_5956_new	7	21	11	11	15	11	28	11	13	6
GCTTGCAGTACATGCT	alt_5956_new	46	100	46	36	111	59	120	48	125	52
TACTTGTCGTCCAAAC	alt_5956_new	0	0	0	0	0	0	0	0	0	0
ATGCGGCGTGGGAAAA	alt_5956_new	134	188	152	110	184	118	202	124	191	143
GCTCTCACACTAGCGC	alt_5956_new	94	171	119	94	160	88	193	83	187	76
AGGGTATCGCACTGTT	alt_5956_new	101	158	73	74	153	84	149	62	170	71
ATAAGGGCAGTTGAGT	alt_5956_new	0	0	0	0	0	0	0	0	0	0
CTACGATCATACCTGC	alt_5956_new	0	0	0	0	0	0	0	0	0	0
AGTAATCGATCCCCCG	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GGCTTCTTTCTCTTTA	alt_5956_new	26	47	30	28	41	29	38	27	36	22
ATGGATGTCGAATGCC	alt_5956_new	0	0	0	0	0	0	0	0	0	0
CAAGTGTGAAAGCTAG	alt_5956_new	11	29	18	16	33	9	24	15	22	11
TACACCTGAACATGTC	alt_5956_new	30	40	34	40	47	29	57	39	55	31
CCATTCGGCTTCATTC	alt_5956_new	7	15	1	4	21	4	21	2	11	5
CAAAGCGCTGAGAGTC	alt_5956_new	0	0	0	0	0	0	0	0	0	0
ATAAGGTGCATGAGGG	alt_5956_new	55	109	62	58	110	49	100	64	121	44
TGTTGTCTGATTCCGG	alt_5956_new	32	41	38	32	34	32	48	25	47	37
CCGAGTTAATCAGGTC	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GGTTCGATTAATTTTG	alt_5956_new	6	3	5	3	9	3	7	3	7	5
CATTTTGGTTTTGGAA	alt_5956_new	0	0	0	0	0	0	0	0	0	0
TGGGTGATCCAGCTTC	alt_5956_new	16	29	18	15	27	14	31	18	35	17
CAACCGGATTTTAAGT	ref_5956_new	30	74	40	33	85	42	87	31	66	26
TTTGCTCCCACTTGGG	alt_5956_new	24	42	25	24	42	24	48	27	34	18
TGCCATGATATTTGAG	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GGCTGCCGGCTTCGTT	alt_5956_new	13	12	5	11	14	9	26	13	19	6
TTCCCAATCCCTTCTC	alt_5956_new	0	0	0	0	0	0	0	0	0	0
TTAACTAGGCCCATAG	alt_5956_new	0	0	0	0	0	0	0	0	0	0
TTCTCAACCGCTCTAA	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GTGGTCGTCGCTTCTT	alt_5956_new	85	124	92	78	104	87	139	84	156	78
AGTGTCTATTGTTCAC	ref_5956_new	24	51	30	23	52	28	52	33	56	33
TAATCCGAATCTGCGT	alt_5956_new	72	105	70	70	105	73	106	68	120	77
CCGGTTTAGATTATAA	alt_5956_new	8	51	5	11	56	8	44	8	53	4
GCTCAGAGCTCGCGAG	alt_5956_new	0	0	0	0	0	0	0	0	0	0
CCGAGATCTCCCGTTC	alt_5956_new	25	47	22	21	36	25	35	21	34	21
GCTTGGCTGCATGCCT	alt_5956_new	11	12	5	10	11	12	20	5	10	8
TATGCAAGCGACTACT	alt_5956_new	8	13	7	3	11	9	13	6	22	12
CCCCGCATCGCGTAGT	alt_5956_new	31	67	27	22	68	22	54	17	72	20
CCGCCGGCTTCCTTCC	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GCTACTAGACATCACC	alt_5956_new	66	129	92	75	163	75	166	56	168	74
AACGACCAATTATTGT	alt_5956_new	3	11	1	2	7	6	6	2	12	4
AAAGGATGACGGACCT	alt_5956_new	10	26	21	20	21	16	22	27	28	26
AAAAGCATCCATTGCG	alt_5956_new	31	36	32	30	45	19	48	21	35	26
CTTAATCGGTCATTAG	alt_5956_new	59	122	103	76	163	51	150	70	130	75
CACGGCCACTAGAGTA	alt_5956_new	52	95	51	53	110	53	99	47	100	40
CCAATGTATGTTCAGT	alt_5956_new	47	86	53	42	80	44	108	38	110	45
TTGTTATTCTGCAGCC	alt_5956_new	16	23	22	9	23	14	20	15	12	11
ATAGAGAACTACTACG	alt_5956_new	34	46	51	49	67	37	72	49	75	37
GACGGTGATCATATAG	alt_5956_new	62	61	78	57	81	39	89	70	69	41
TACTCGTAGTAGCTCT	alt_5956_new	3	4	5	5	9	5	11	3	3	6
GCTTCATGCCTCTTCA	alt_5956_new	11	36	21	22	33	17	24	18	39	19
CTATGGGAGGGGGCCG	alt_5956_new	63	67	64	55	76	51	91	42	78	47
CAGAATCGAGTCCCAC	alt_5956_new	4	1	10	3	5	4	4	3	8	5
GCAACATCGCATCGGA	alt_5956_new	16	33	21	20	27	24	35	22	25	9
TCTGTATTTCGCTAAA	alt_5956_new	0	0	0	0	0	0	0	0	0	0
AGCCCTGGGTGTTAGC	alt_5956_new	1	3	4	6	9	4	3	2	7	3
GGGCGCGCGGTAATGA	alt_5956_new	0	0	0	0	0	0	0	0	0	0
TCTCCAGCGTCGCGGA	alt_5956_new	4	22	12	10	10	22	27	11	23	15
CTATGCTAAGACTTAT	alt_5956_new	24	34	20	21	32	14	27	17	41	13
TTATTCTTCCATGTTA	alt_5956_new	0	0	0	0	0	0	0	0	0	0
CACCTGAATAGTCCCA	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GAAGCCACCAAGCCCG	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GATCAATAGCTATTCT	alt_5956_new	49	85	60	52	84	62	69	42	73	55
CTTTGGCCGAGCCCGA	alt_5956_new	42	98	71	53	103	48	77	41	110	56
CCGCAGATCCAAATAT	alt_5956_new	0	13	5	2	7	0	14	1	9	7
TATGTAATCTTTAAGT	alt_5956_new	26	27	36	15	33	29	35	34	42	16
CATACCATTAGGAACT	alt_5956_new	30	49	47	22	64	35	58	25	77	29
TCTCTTTCTGTTTTGG	alt_5956_new	50	61	77	41	44	57	61	33	82	48
GGCAACGTGATACGGT	alt_5956_new	0	0	0	0	0	0	0	0	0	0
GTGGTGGTATACGGTG	alt_5956_new	34	35	31	41	44	30	60	32	67	24
GAGATCCGGCGATCAC	alt_5956_new	76	96	87	72	87	60	86	56	93	71
TCGGTCCTATCGGCAC	alt_5956_new	41	54	47	37	68	42	63	42	69	44
TCGGTTTTTTACTGCA	alt_5956_new	36	40	30	23	32	12	34	23	34	12
ATGTGTGGGCCTTCCT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGTTTCATGGCCG	ref_1261_fdr	32	47	42	27	53	24	39	25	48	26
TCGTTCGTTGGTACGT	ref_1261_fdr	74	111	83	64	114	79	87	61	112	54
TCTAGCGGCCCTCCTC	ref_1261_fdr	28	50	34	20	34	28	43	28	52	26
GCGACGGGTTAGGGCC	ref_1261_fdr	22	24	28	20	21	14	22	14	20	9
CTACCTATATTGCACT	ref_1261_fdr	13	22	11	14	19	18	22	12	25	11
GGTGCAATAAGCGCCT	ref_1261_fdr	36	48	44	36	56	37	45	38	51	43
CCTTGATGTGTCCCTC	ref_1261_fdr	14	90	21	18	85	11	89	4	91	15
GTTCTAATGCTTTCCT	alt_1261_fdr	171	183	200	207	217	163	211	155	204	158
CTGTCATAGGTGACAC	ref_1261_fdr	65	91	74	70	98	64	95	48	88	52
CGGTGTTATTAGAATT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TTTACGCTTGAAAGGT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
ATTATCACATAACGCA	ref_1261_fdr	1	2	2	0	6	5	4	2	3	2
TGCCGTCTCTTCGGAC	ref_1261_fdr	42	40	40	38	33	24	35	39	46	27
ACGGTCCCCGGGGCAA	ref_1261_fdr	10	15	5	9	21	14	16	6	12	12
TGACGGTCTGTGCTAG	ref_1261_fdr	8	29	12	17	22	10	33	16	19	11
GCACCGCAGGCTCGTC	alt_1261_fdr	19	25	24	25	25	20	31	12	32	20
TCATCTGTGCATTGAC	ref_1261_fdr	12	22	16	33	24	15	34	19	23	16
TGCATGCTGTCCCTTG	ref_1261_fdr	2	7	8	5	6	7	5	2	4	4
CTCATACTTAGGGTTG	ref_1261_fdr	13	33	31	22	35	36	31	21	35	31
TTCAACTGCTATAAAC	ref_1261_fdr	39	29	22	23	40	30	34	19	33	28
TTTTCTGACTTCCAGG	alt_1261_fdr	66	76	63	79	91	65	94	70	90	59
AACTTTGAAACCAAAA	ref_1261_fdr	16	27	24	17	14	34	31	16	34	10
ACCTATGTATGAAAAG	ref_1261_fdr	16	16	13	12	26	11	30	14	17	10
ACGTTTGTTAGCATAC	ref_1261_fdr	28	31	37	28	38	32	34	26	52	19
TTAATGATGTAAGGGG	ref_1261_fdr	45	41	56	38	59	33	67	54	57	48
TTTCCGTCCCTCCGCC	ref_1261_fdr	28	18	48	37	30	26	41	20	42	26
GACAGCCGCTCTTATA	alt_1261_fdr	109	230	156	155	218	129	235	120	259	128
GCTCAAGTATCACCCT	ref_1261_fdr	23	34	14	12	11	10	32	10	17	12
TCAGGTTATATGTTCT	ref_1261_fdr	0	2	3	2	2	0	2	0	1	0
AGACGGATCTGCCGTC	ref_1261_fdr	6	6	12	4	4	3	11	7	12	6
GGTATGCACGCAGCTA	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
AGCCTAAGGGCTTTTG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CCATTGGATTGTTGCC	ref_1261_fdr	4	2	11	9	8	3	7	4	9	2
CCGCGTAATTCTCTCG	ref_1261_fdr	12	9	13	20	10	11	9	7	16	17
GATGATCCCGTCAATG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TAGGCAACAGTACTGT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGTGTACTACAT	ref_1261_fdr	0	2	1	1	0	1	1	2	1	2
ACTGGATCCGCTTGCA	ref_1261_fdr	54	52	66	69	66	29	75	44	68	27
GTGATGGGTGTAACAC	ref_1261_fdr	91	127	94	96	144	94	146	94	150	96
TCTATGTGATGCAGGA	ref_1261_fdr	20	34	31	30	25	27	35	18	26	17
GGGAACCCCGTCCATT	alt_1261_fdr	5	6	3	1	5	3	16	1	9	1
GGTTATTCTGCTTTGG	ref_1261_fdr	26	17	20	16	23	14	29	26	22	17
GTGTTTTTTAAGCGGC	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GGCGGATTCTTCTGTC	ref_1261_fdr	75	88	96	63	72	69	102	63	80	74
GCAAAATTGATCCAGA	ref_1261_fdr	48	78	66	52	60	42	83	53	92	47
TCTCGCGAAATCTGAA	ref_1261_fdr	35	47	38	27	46	23	40	26	47	22
TATGGTTGAGCATCCC	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CAGAATAGCCTGCCTC	ref_1261_fdr	15	20	7	14	19	6	22	5	19	7
CCGGCCCCAGTGCGAG	ref_1261_fdr	70	90	65	76	81	77	79	52	107	57
ATCCGTCCCAAAAAGT	ref_1261_fdr	27	27	36	21	34	31	39	14	32	22
TGGTCCCCCGCTAATA	ref_1261_fdr	35	30	20	24	26	29	34	22	34	29
CATGTTAACCTTAGAC	ref_1261_fdr	63	76	59	50	62	48	85	43	68	48
TTGACGACACGAAGGT	ref_1261_fdr	38	55	45	44	49	46	42	29	61	37
CATGTATCCCGTTGTC	ref_1261_fdr	3	3	1	1	3	6	0	3	3	0
GAATCGCATAAGCACG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCATTGTTCCGCC	ref_1261_fdr	22	20	25	23	29	9	25	16	32	11
TTGCTGGTTAAATTCA	ref_1261_fdr	21	22	25	17	32	14	26	12	24	19
TGCATGTTGTAAATGA	ref_1261_fdr	52	91	63	53	81	51	67	45	94	57
GGTCGTGGTGCCCCAC	ref_1261_fdr	5	7	2	1	4	1	6	1	6	4
CACGCGGCGTTTCAGG	ref_1261_fdr	16	22	17	23	16	22	25	16	14	15
GCCTACTTATTATTCT	ref_1261_fdr	185	124	251	205	140	161	165	180	146	169
GGGGTGATAGTTGAGC	ref_1261_fdr	29	44	37	36	38	38	44	18	56	33
CCATTGCTGCTGGGGT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTCAATTTATTTG	alt_1261_fdr	122	172	165	150	173	116	212	124	220	120
CTACCCCAACCCGGAG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
ACAAAATCTAATTCGA	ref_1261_fdr	117	125	102	77	108	81	159	97	111	93
GGCGTGAGCTGTTAAA	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GCGAAGTAGTAAGATG	ref_1261_fdr	6	6	13	5	8	8	6	2	8	1
GAGGGAACCTTTCAAG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGCGATAGACATA	ref_1261_fdr	26	42	34	56	46	37	39	33	41	19
GAATAGTGTGCTTCTA	ref_1261_fdr	18	34	15	20	21	17	34	19	27	11
GCTCTTCTCTCGCATC	ref_1261_fdr	22	31	28	36	34	26	32	26	36	21
TTTTTTTAATTCTGCG	ref_1261_fdr	28	38	36	35	50	39	50	40	44	27
TATATCGCGTTACCGT	ref_1261_fdr	3	3	1	7	5	0	8	0	1	2
TAATTTGTGTTCATGC	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CAATGGTAATCCTCTA	ref_1261_fdr	36	50	42	29	63	28	64	24	44	27
CTGACATCTGTTAGCT	ref_1261_fdr	16	60	23	17	66	18	79	18	70	16
CTGGAGTTCTTGGCCA	ref_1261_fdr	21	42	35	22	38	46	45	22	40	25
CCAGAATGTTACTTTC	ref_1261_fdr	37	33	32	32	30	28	37	24	44	14
GGGTTTCGGTGGCAGC	ref_1261_fdr	19	7	20	14	13	12	11	13	17	9
AACCACGGCCTAGGGG	ref_1261_fdr	8	8	11	12	8	6	10	3	9	5
GGCACTTATTTGGGCG	ref_1261_fdr	26	26	30	29	22	15	40	19	28	16
GACGCCCACCTGTCTG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCTACCGCTTCAG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTCAGTTTCCGAT	ref_1261_fdr	47	73	86	58	67	66	75	46	75	55
ATTCATGCGTTCTGAT	ref_1261_fdr	25	48	41	39	45	33	37	28	37	22
GTTGCGCGATCTCTCC	ref_1261_fdr	4	7	10	7	12	5	6	4	6	2
GGGTCTCCGTCTCGCA	ref_1261_fdr	26	27	27	23	29	21	27	21	27	29
CTGTTAACCGACGCAC	alt_1261_fdr	14	23	8	11	21	5	38	13	29	7
TTAACTGGCTGGCTCT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCTTACCGAGCAC	ref_1261_fdr	10	13	19	17	18	23	28	14	34	11
ATCGGCACATGATTTA	ref_1261_fdr	12	17	15	14	14	11	13	13	13	13
CTGGTGTTTGAGGGGG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CGTACTAGTAAATTAA	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GACTTTGCGTTACGGA	ref_1261_fdr	18	19	21	16	19	18	24	17	26	10
GATCAGTGTTCGGATA	ref_1261_fdr	37	76	58	44	70	52	80	40	66	47
TGCTTATAGCTTACTT	ref_1261_fdr	7	12	5	3	22	7	22	6	14	3
AGACTCGAAATATCAC	ref_1261_fdr	19	26	24	28	26	25	20	22	22	19
CTTTGGTACCCACTTC	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
ATTACCCGTTTAACTA	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGTTTATATCACC	ref_1261_fdr	4	11	9	8	5	4	6	6	11	1
TATTGCCCTCTCGGAC	ref_1261_fdr	32	27	34	30	34	19	30	17	31	21
GCAGCAGTAGGCTGTA	ref_1261_fdr	1	1	3	2	5	0	1	3	1	2
AGGGTATGTCCTTTGC	ref_1261_fdr	161	188	177	131	172	160	196	137	182	112
CGTGGCTACCGGCGAT	ref_1261_fdr	10	16	6	6	13	6	18	5	16	12
TTTACGAATCCATGCA	ref_1261_fdr	27	38	34	23	23	40	35	17	40	23
GGGCGTCTTCTTAGGT	ref_1261_fdr	99	97	120	121	113	107	118	109	119	77
TGTTCGACTACTTACT	ref_1261_fdr	24	43	27	20	56	16	53	25	51	19
GCCATTGTGCTACGAT	ref_1261_fdr	14	27	18	19	36	18	33	25	35	18
CAGTATGATCTTGCTG	ref_1261_fdr	2	10	10	10	9	4	5	2	9	7
TTTCGGAGGTTAGGTA	alt_1261_fdr	46	53	62	57	64	60	59	34	66	30
GAGTTTGTCCGCGGCA	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCAGTCCTGGAT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GCCGACCGTATGTACG	ref_1261_fdr	27	50	23	22	30	20	45	15	38	19
GCGGCCTTCTCCCTTC	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGAGCTATCTAGT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CCACAATGTCGTCCCG	ref_1261_fdr	4	11	7	10	13	7	10	10	15	6
AAGGGCTTTTCCACTG	ref_1261_fdr	10	10	9	11	15	8	19	3	12	8
GTTATTTGATCCCCTC	ref_1261_fdr	4	7	15	4	8	5	2	12	10	5
GCGTTCACGGTTTGGC	ref_1261_fdr	11	22	15	17	14	15	21	13	9	8
TTTTAAAGCGGGCCAA	ref_1261_fdr	6	6	10	4	9	6	9	5	8	3
TCTGTGCGTTCCTAAG	ref_1261_fdr	36	62	49	37	53	46	83	27	60	33
ACGCCCATTTGCACCC	ref_1261_fdr	14	20	13	14	12	5	11	14	10	9
ATTGACGTGTTTGGAC	ref_1261_fdr	23	26	24	33	31	29	31	16	40	32
CACTCGCGTTCTGACT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CGAATGTATACGACGG	ref_1261_fdr	89	151	134	117	133	90	130	87	154	99
ATATCTGCCTTTCCAT	ref_1261_fdr	32	53	39	31	58	35	49	42	58	26
TTGCCGCGGGCATTAA	alt_1261_fdr	13	16	15	20	18	4	12	8	18	8
TATCCAAGGATGAACC	ref_1261_fdr	30	50	56	35	38	35	55	35	70	23
TTTGCCTTGTATACTC	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTATAGGGTCGAT	ref_1261_fdr	16	14	21	13	27	12	21	10	23	18
CCACCACAACAGGTCT	ref_1261_fdr	35	69	50	40	47	31	39	40	64	31
CAATGACACTGTACTG	ref_1261_fdr	14	16	12	11	14	7	16	9	15	10
TAAGATTCTTGTCGCA	ref_1261_fdr	3	8	1	1	7	2	7	2	4	7
ACGTTCGAAGTCCCGG	ref_1261_fdr	0	7	4	5	6	3	6	6	9	3
ATTGAGGCTCACCACT	ref_1261_fdr	16	26	17	28	14	23	22	14	14	16
ACATTCTTCCTATCTA	ref_1261_fdr	4	8	5	6	5	5	5	2	6	2
CAATAATGTATGGGAG	ref_1261_fdr	8	6	4	8	8	7	10	14	10	14
GGTCTAAAACCCGTGA	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GCTTACCTTTATGCAT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGGGCTTTTTGCC	ref_1261_fdr	6	11	16	8	24	12	15	13	14	12
TATTGTTTTACTCCCA	ref_1261_fdr	8	14	6	9	9	2	7	8	7	9
GCCACAATAGTTCGCT	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGGCAGAAATAAA	ref_1261_fdr	23	30	30	18	22	16	30	22	26	25
TGTAATCTGGATTCCG	ref_1261_fdr	20	18	12	21	20	12	20	8	23	10
AACTTACTAACTATTT	ref_1261_fdr	22	17	18	16	23	19	10	23	22	13
TTTAATTTTAAGCACG	ref_1261_fdr	8	16	21	24	11	10	24	4	9	11
AGGACAGGCCTACTCC	ref_1261_fdr	8	3	8	3	10	5	7	4	10	7
TAACTGTGAGCACACG	ref_1261_fdr	5	12	9	7	14	12	16	5	13	6
CTGATCAAATCATTTT	ref_1261_fdr	2	3	2	2	5	5	4	3	7	2
CTAGCCCCAGGAGAGG	alt_1261_fdr	121	181	141	120	216	128	200	150	188	102
CCGGTTGAAAGTTTTC	ref_1261_fdr	4	6	5	9	2	0	1	5	8	3
GGTAGTAGGAGACAGT	ref_1261_fdr	15	17	18	17	23	12	27	12	20	16
CCCTCTCATGCGCCGG	ref_1261_fdr	15	14	9	6	16	10	13	6	12	8
GATTGGTGCACTACGG	ref_1261_fdr	0	0	0	0	0	0	0	0	0	0
CACATCGAGTGCCAGA	ref_1261_fdr	52	54	60	46	57	43	56	35	69	47
TTTGCCGATACTGCAG	ref_1261_fdr	7	8	2	3	4	2	3	1	3	2
TGGGCCCTCGGCTCGT	ref_1261_fdr	52	70	86	61	77	74	81	55	72	68
GCATACGACTTGACTC	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
AACTTGGGAATTACGC	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGGACACAGGTAT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TTCACAGCTATTGGCG	ref_929_upstream	135	24	160	152	20	111	25	94	24	115
CAATTATTACGTATTC	ref_929_upstream	99	22	161	132	20	105	13	126	21	95
GCCTGCGTGTCATTAA	ref_929_upstream	9	5	25	11	3	20	7	19	6	12
GAACTTGCCACGCGGT	ref_929_upstream	230	37	313	237	38	213	37	207	33	215
CTTCATGATACTTTGG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCGCTGATGTACG	ref_929_upstream	353	62	379	327	63	321	64	288	57	303
GTAATCGTCTTTCTCC	alt_929_upstream	31	14	48	38	19	30	19	49	7	24
TATGAAATACTCGGAA	ref_929_upstream	57	8	92	58	4	60	12	51	10	48
TTTGTGCTTCTTTCGC	ref_929_upstream	380	80	506	417	84	391	55	393	59	334
ATCAATGTCGGGTAGA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GAGAAAAGACACAAAG	ref_929_upstream	195	19	241	196	35	185	34	170	20	179
GGATTGGATATATTGT	ref_929_upstream	49	8	43	34	9	34	8	35	8	32
GCCATGCCCTCTAGAA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTCAGTAGGACGG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCGGCATGGGGCC	ref_929_upstream	252	86	335	322	77	291	122	292	99	234
CAAGCGATGTGAAGGT	ref_929_upstream	294	45	405	320	47	307	54	304	38	277
CTTGATGTTAGCGGGG	ref_929_upstream	169	13	175	167	23	153	26	139	24	143
ATTTGAGCCCGAATTG	ref_929_upstream	153	32	181	185	19	135	42	157	29	124
GGGGGCGTGGGCGTTC	ref_929_upstream	32	5	35	36	5	26	5	23	12	35
GCTATGATTGACCATT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTTACTCGGATTG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGGTTCGTGTTTT	ref_929_upstream	60	10	82	57	13	55	15	50	7	60
CAGGGCCCAAATAATG	ref_929_upstream	109	17	191	176	29	163	31	148	40	142
CGCGCATTTTTGCCTG	ref_929_upstream	79	16	104	102	16	105	14	75	22	81
CCATCGCTGTGGGGCC	ref_929_upstream	113	44	144	145	39	122	38	147	40	120
AGCGTGTGTTCTCCGA	ref_929_upstream	173	29	201	162	50	159	47	176	38	140
TGTTCCATTGCGTTTG	ref_929_upstream	26	11	26	31	3	34	9	43	3	27
TCAAGTCTGCTTTGCG	ref_929_upstream	33	10	34	42	8	33	7	35	8	33
ATGGTGGTTCACCCTG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGTCAGCTCGATA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
AAGTAACTGGCAATGA	ref_929_upstream	243	29	270	267	46	236	44	252	30	203
TCCGGGGTGGATAGTC	ref_929_upstream	370	88	493	424	63	336	59	404	80	396
TTACCCTCAAACTTTG	ref_929_upstream	1677	260	1798	1673	231	1495	280	1462	272	1332
CTCAAGCTTCGCTTAT	alt_929_upstream	273	77	389	357	73	259	73	287	74	282
TCCCGCTTGACCGCTC	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCCTTTGAATCGG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTTTGTTACGTC	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCCGCCCTTTAGT	ref_929_upstream	392	42	486	428	57	370	60	391	72	358
CGTGTACGACCATGGA	ref_929_upstream	123	17	122	117	34	132	20	90	23	109
CGTCTGATGAAGTTTT	ref_929_upstream	104	29	174	131	43	123	38	124	32	108
AATAGTGGGGCCTTTT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GCGGAGAATCATTGTC	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TACCCGACCTCTTTAC	ref_929_upstream	434	99	604	609	139	479	118	577	119	439
TGTTACAGGTAATTTA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CCTCAACGGAATGCAT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
AAGCCGATGGCATCGC	ref_929_upstream	305	38	337	344	41	274	40	319	46	272
GTGTGAGTTTTTTCTA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GAGGGCCCAGCACTCC	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTAATCATTATAT	ref_929_upstream	805	110	976	833	114	898	138	758	141	686
AAGAGAACTAATTCTT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCTTACCCCCAGT	ref_929_upstream	226	42	216	198	41	161	45	170	52	174
GCTAACTCCTGACGTT	ref_929_upstream	45	4	44	38	7	37	5	39	7	24
AAAGCAGGAACCGAGT	ref_929_upstream	202	29	257	182	37	192	47	205	38	184
GGCTCAGCCGTGGCCC	ref_929_upstream	408	55	512	503	72	373	96	381	88	365
GCTATAAGTTTATTGG	ref_929_upstream	1216	179	1338	1185	231	1143	251	1105	246	1033
AGTCGTGCTATAATTT	ref_929_upstream	319	59	387	315	64	350	60	273	55	266
CATCGTAGACATGGCT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGCCTCTATTGCC	ref_929_upstream	52	4	86	72	16	55	7	60	15	44
GATTTACAAATTAGTT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGATACACGGCTT	ref_929_upstream	21	26	28	21	29	18	39	10	44	19
TCAAATGTTACGCAAT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTTTCAACAATGC	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
ACACTAGGGGCGGCTG	ref_929_upstream	340	59	400	362	53	338	62	342	79	255
TCATGCGTAACGGCTT	ref_929_upstream	72	7	55	70	15	55	8	62	17	42
TATTCTTCACTTCCTT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GTACTGCGCATGTACT	ref_929_upstream	188	51	190	182	40	144	30	181	42	176
CTTGATCGTGCGTTTG	ref_929_upstream	16	2	10	9	2	14	0	14	1	12
TTCTCTAAACCAGAGA	ref_929_upstream	320	47	320	357	40	312	41	309	38	270
TAATCGTGATCATGTC	ref_929_upstream	394	58	495	431	61	385	58	356	84	396
CTCTCCTCTGCTCTCT	ref_929_upstream	349	46	418	373	39	330	64	275	44	331
AACTTGGACCAGGTAG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CCCCTGCGGCCAGATA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GGTTATTTCCGTCTAG	ref_929_upstream	219	32	289	243	32	212	36	186	38	215
GGAGGGATCATCTTCT	ref_929_upstream	191	33	251	233	29	202	35	185	26	178
GGGCAGTTCTTATTTC	ref_929_upstream	255	46	351	330	52	253	47	264	54	225
CGTCGCGATTCGACAA	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGAAATCGCGTTG	ref_929_upstream	493	65	543	523	79	474	91	413	76	405
ATTGTGCGCTTTACAC	ref_929_upstream	88	18	80	57	13	59	15	73	18	66
TTTTGATAGGTTCAGA	ref_929_upstream	123	19	128	122	19	120	20	87	28	98
TGAGGGGCTATCGGTT	alt_929_upstream	29	5	39	35	2	26	9	27	8	25
ACCGACGCGATTGGGG	ref_929_upstream	266	31	269	249	36	195	46	199	48	205
ACAGACTTCCAGTGCT	ref_929_upstream	233	48	232	219	29	190	29	209	36	194
GAGTCGTGGTTAGTTA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCCGAAGATACTT	ref_929_upstream	141	31	206	141	27	145	20	141	20	125
TGCCGCTTATTCGACG	ref_929_upstream	118	27	182	144	27	118	37	155	30	121
ATGATTGACAATTTGC	ref_929_upstream	782	105	967	778	121	727	127	723	129	583
GAGTATATGAATGCTA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
ACTAGATACCACAGAG	ref_929_upstream	120	20	161	113	23	112	29	124	25	103
TCCGGGTGTTTCTAGG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTCAGTCTATGGA	alt_929_upstream	35	3	37	33	5	41	8	35	3	27
TATGGTGCGCTGGCGT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CGCACCTCTGCTCTAT	ref_929_upstream	166	28	169	152	19	144	26	157	28	138
TTCGCTGTTTTATCCA	ref_929_upstream	139	21	185	162	31	148	23	141	29	147
CATAATGACCCATCTG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGCGATTGACGTT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTTAATCTTTAAA	ref_929_upstream	328	38	461	340	57	331	58	334	55	308
GGCCCGTACCCGTTTT	ref_929_upstream	60	7	90	49	12	56	5	46	12	70
TCTTGTGCTGCCCTGG	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTAAACTTTCTGT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TGCGAGCGATCTGCCT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
CGCATTCCGGAAGCTT	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTGAGTTCTGGCA	ref_929_upstream	0	0	0	0	0	0	0	0	0	0
ATATGTATCAGCGTGT	ref_929_upstream	290	40	349	304	47	255	46	272	44	239
AACAAGAAAAGGATTC	ref_929_upstream	120	14	171	151	25	131	22	117	18	121
TTTATTGTTGTTGCAA	ref_929_upstream	176	22	169	159	29	121	22	106	30	106
AGCGTCTAACGTCATA	ref_929_upstream	127	30	180	141	37	108	29	136	34	140
AATAATTTATTGGTAG	ref_929_upstream	192	40	267	267	41	227	43	223	37	193
CCCAGGGTCGACTGTG	ref_929_upstream	21	7	35	33	10	30	7	25	13	29
GTTCTTAACTGGCTGA	ref_5065_fdr	20	7	18	30	14	19	4	23	17	10
TTTAGGATCAGGAAAT	ref_5065_fdr	14	8	6	7	5	14	4	8	9	13
GCCCACTCGTAATCTT	ref_5065_fdr	9	5	6	8	4	4	7	8	10	9
ACGGTCCCAGCGCGAT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGGGTATATACCT	alt_5065_fdr	172	118	236	225	108	187	124	188	116	180
TCTTTGTACATCTCAG	ref_5065_fdr	28	13	39	28	15	30	16	23	17	37
TAGAAGTTGTGCCGCC	ref_5065_fdr	75	47	113	83	66	68	60	75	55	77
TGTCTCGCCCTGGCAC	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
TGACTAAAGCGGGCCC	ref_5065_fdr	63	21	79	40	29	50	25	39	23	49
CCCATTGCGCCTCTGA	ref_5065_fdr	23	11	44	28	14	24	14	18	12	19
AGAGGAGACTTAAGAA	ref_5065_fdr	15	3	18	15	13	10	6	10	15	10
TTTCCCGCACATGTTA	ref_5065_fdr	9	3	16	12	9	10	4	11	5	15
CCGTGTTTTTTTAGAT	ref_5065_fdr	105	46	107	100	49	117	49	83	62	78
CCCAGTACGATGTTCA	ref_5065_fdr	7	8	7	9	3	2	8	10	7	3
ATCCCATAGCGAGGCT	ref_5065_fdr	50	30	67	38	17	48	18	58	27	38
TAAAGCATTAAACACC	ref_5065_fdr	12	2	14	6	0	5	3	3	6	10
TATGTTTCCGAATCCG	ref_5065_fdr	82	29	76	56	36	55	24	65	19	56
CGCCGCCAAGTCATAG	alt_5065_fdr	34	37	45	36	40	52	49	48	38	20
TGTATGTTCTTTCGAG	ref_5065_fdr	49	48	89	78	44	44	40	71	38	62
TCGGTCCCTTGGTGGA	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
CTATCGTATTCATGAT	ref_5065_fdr	242	122	307	278	171	237	134	287	148	223
CAAAACGTCGGACAGA	ref_5065_fdr	24	16	30	39	15	27	16	22	19	23
TCCGGCCCTGTTGTAT	ref_5065_fdr	155	81	195	180	92	143	94	161	109	162
GACGCTTTCCACCACC	ref_5065_fdr	286	225	341	303	223	252	245	261	257	277
CAAGAGGCCTATAAAA	ref_5065_fdr	175	79	198	182	82	185	72	170	78	144
TCTGCTGGAAATACGT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTCTTCGTAATCA	alt_5065_fdr	58	33	77	65	33	62	36	68	54	65
GGGTGATTAGTCCACG	ref_5065_fdr	30	12	23	31	15	30	20	31	14	32
TCATATCGATTACAGG	alt_5065_fdr	57	25	65	61	33	42	32	58	45	58
ATCGATTAGTACTTCT	ref_5065_fdr	39	30	75	69	30	44	29	55	27	43
CGTCCTACGGTCGCTA	ref_5065_fdr	45	30	43	26	15	20	24	20	18	15
TCTCGTGCCTTCGTGG	ref_5065_fdr	370	208	478	368	256	356	230	359	236	313
ATGTCATTTCGACCCG	ref_5065_fdr	5	4	12	14	6	11	7	13	2	10
GGACTCTATGTTCGCG	ref_5065_fdr	385	151	452	373	197	356	250	348	239	341
CCCTGTGGGATGGACA	ref_5065_fdr	7	4	24	9	7	12	4	11	10	14
GCACTCCTATGCATCT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTTGCATGCTCCT	ref_5065_fdr	10	1	0	3	1	5	1	4	0	1
TTGGTAATTCACGCCA	ref_5065_fdr	4	3	0	3	0	3	1	3	1	3
TGCCCTGTTTACCAAT	ref_5065_fdr	90	37	88	73	47	63	46	65	35	65
CTAATTCGTCATGAAC	ref_5065_fdr	38	20	60	35	26	34	21	47	18	48
GGGCAGATGAGACACT	ref_5065_fdr	195	127	225	183	120	184	136	184	144	156
ATGCAGGAGATTTAGC	ref_5065_fdr	4	3	12	2	4	3	6	9	4	4
ATCATCCTATAGTTGC	ref_5065_fdr	13	14	32	41	15	28	12	25	16	27
CTCCATAAGATCCAAT	ref_5065_fdr	53	46	65	39	42	34	42	57	42	33
ACGCAATTTTTGTATC	ref_5065_fdr	38	18	44	28	23	23	17	29	21	24
GGAATCTCATGTTACC	ref_5065_fdr	50	30	66	55	28	38	37	45	31	43
AAAAGTATATAGCTTT	alt_5065_fdr	378	267	535	446	237	382	270	392	271	363
GGCATAAAAAAAGTTC	ref_5065_fdr	240	135	296	210	128	203	140	205	133	184
TGTGTGAAATTTCTTC	alt_5065_fdr	35	21	47	39	18	32	23	27	15	43
TTTTGCGAACGGTCAA	ref_5065_fdr	148	84	173	149	89	167	85	164	97	162
GTGGAAATGCTTAGTA	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
CTACAGCGTATATTGC	ref_5065_fdr	8	7	3	10	2	4	2	10	8	3
GACAGGTTAACCTCAC	ref_5065_fdr	24	10	27	27	28	22	13	29	17	24
ACTTATACACTGCGTA	ref_5065_fdr	108	76	82	86	112	78	83	83	79	68
ATTATGTTCCCTTCCG	ref_5065_fdr	45	13	46	46	14	39	18	31	15	38
CCAATAGGAAGCGGTT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGATTTCCTTTTT	ref_5065_fdr	55	31	56	66	23	56	27	40	18	47
TTCCGTTTTTTGGTCT	ref_5065_fdr	23	6	19	13	9	26	9	17	21	17
GATTTCGAAGTGCGAG	ref_5065_fdr	5	3	3	3	3	4	4	5	5	4
ATTCGGGGCCTCATAC	ref_5065_fdr	70	46	87	77	45	59	49	65	48	67
TTCTTGCAGGTAGCTG	ref_5065_fdr	115	56	130	107	49	83	57	101	63	98
TTGCAAAGCTTAAGAA	ref_5065_fdr	27	9	30	15	13	28	3	13	12	27
ATGCGTACCAACTCAT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCGTAATTCCAAC	ref_5065_fdr	182	94	209	190	93	150	106	195	100	173
AGCTAAGAAGTCCTAA	ref_5065_fdr	32	16	23	31	19	23	17	30	10	21
CTGTTGCTGCCCGTAT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTTCTACTAGCCT	ref_5065_fdr	7	5	8	5	9	3	14	8	5	8
TCCCAAGTCCGGCCTA	ref_5065_fdr	97	48	105	90	57	77	51	110	56	82
TCCATCGCAATGTTAG	ref_5065_fdr	183	147	212	214	174	169	160	193	144	168
GGTTGTGGATTTCGTT	ref_5065_fdr	13	11	25	25	13	17	8	12	14	12
TTGAACCTCATGTTTC	ref_5065_fdr	90	46	130	87	54	103	58	93	57	81
CGCAAAAGTGCTACTT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTTATTGTATATC	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
ATCATGTTCCCCACGG	ref_5065_fdr	182	116	235	209	127	168	138	163	155	175
CCGTGTAACCTGTTTA	ref_5065_fdr	56	26	70	55	35	27	38	45	32	36
TGGGGTGGTTTATCTG	ref_5065_fdr	228	115	387	277	149	259	133	260	133	227
ATCTACATGCGCTTAG	ref_5065_fdr	2	3	7	4	3	6	3	5	6	6
ATGTATTAGTGGCTTG	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
TGATTCTCCGGTCATT	ref_5065_fdr	22	14	17	28	14	14	7	23	16	19
AGGCCTCCTAACATCC	ref_5065_fdr	113	52	140	124	57	128	68	108	63	119
GAAGCTAAGTGAGCAA	ref_5065_fdr	32	23	58	45	18	51	17	46	16	45
CTGAACAGAATGGTAC	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
CACCTGCAGTCTCGCG	ref_5065_fdr	45	25	51	44	28	46	24	38	36	34
GGTGGTTTTCCTCGGC	ref_5065_fdr	134	65	136	107	53	122	57	90	70	98
GTAGTCTAAAGTTTCC	ref_5065_fdr	23	15	32	24	11	17	13	16	12	19
GAGTCAGCGTTTGCCC	ref_5065_fdr	59	43	77	51	30	66	35	76	41	51
GATAGGACACTGCCTA	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTTTATCTATAT	ref_5065_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTTATGGCCACT	alt_285_RC	2	7	4	3	5	6	4	7	5	4
TACTCGTCTCTAGATT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TCGTACGGCGCTTCAG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTATGGTGGGTGGCGA	ref_285_RC	11	10	8	7	15	12	14	4	14	7
ATTTGTCTAATAAATC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CCTCCATGTAGACCAT	alt_285_RC	1	4	8	2	13	9	7	3	8	1
TTTTCCAGGCCAACGA	alt_285_RC	4	9	3	2	6	4	1	5	6	1
AATATATGGCAAAGAT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TACGTTCGAAATGCTG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CCTAGGTATCCAGAAC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTCACTCTTTCGTAGG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TACCATTCGACCCGCG	alt_285_RC	41	57	55	58	61	57	45	55	40	33
CGCAGACCGTGGATTT	alt_285_RC	12	10	11	7	22	18	9	8	19	10
TGGCTTCCCATCGTTC	alt_285_RC	1	4	5	4	5	4	2	5	6	2
AGTGTCTCCAGATGTT	alt_285_RC	0	3	1	0	1	5	4	0	7	1
AGTCAAACAATAGGTG	alt_285_RC	4	8	8	5	7	7	13	5	12	8
CTGCGAACGGGTTGTA	alt_285_RC	52	72	71	56	53	54	63	45	49	49
CTCAGTTACGGGTCTT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTGCGTTATGAA	alt_285_RC	7	10	8	12	14	8	16	9	17	8
AATAACTAACCCTGGC	alt_285_RC	18	9	9	10	11	14	14	3	11	6
TTCATTCCTTGGGTTC	alt_285_RC	14	7	16	13	22	19	16	13	26	7
GCGGCTCATAGTTGTA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTGGGATTACAT	alt_285_RC	45	64	65	64	50	52	47	52	61	36
ACCCTATTGAAAGCTA	alt_285_RC	17	34	29	27	26	22	26	19	26	25
TTCAGCCAGTATTTGA	alt_285_RC	3	12	10	8	9	9	14	10	10	8
GTCTTATCAAACTCTC	alt_285_RC	7	2	3	6	5	2	7	3	3	8
CATTCAGAGCTTGCTG	alt_285_RC	126	146	136	127	121	116	149	112	131	116
CATGTGCTGAGCGGGG	alt_285_RC	67	95	92	92	88	67	84	71	91	92
TTATCGCTTATAGGTG	alt_285_RC	33	34	34	30	34	39	48	40	36	32
CTGAGGAGTGGCTCGA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTTTATCTGGATTTCC	alt_285_RC	49	30	37	35	36	26	36	36	32	32
AGTCCGCTAGATCTTT	alt_285_RC	36	42	55	48	46	39	52	32	49	30
ATTTGCGAAATTTCTT	alt_285_RC	62	56	78	49	57	50	63	52	56	60
AGCGTCACTCTGCTGT	alt_285_RC	35	69	74	42	53	52	67	57	74	45
CCCCGATCTCACCCAG	alt_285_RC	42	57	47	38	53	36	40	30	53	36
TACAAGTCTAGGTACG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CCATAATAAACGTAAA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TATTAATCTATCTGGT	alt_285_RC	4	4	4	4	4	5	7	4	1	2
GGATTATATCTCTTGC	alt_285_RC	7	14	11	9	8	18	8	13	17	12
ACATGCGTACAATTAG	alt_285_RC	22	38	48	39	50	34	46	34	46	33
CATCCCTTGCCAGTAC	alt_285_RC	15	16	9	13	14	14	10	19	20	11
CTGCCCTTTCGTTTTC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GGCTCACAATTAGTCC	alt_285_RC	31	42	43	31	43	29	37	42	38	32
TTTATGATTACAACAG	alt_285_RC	1	5	3	4	4	1	4	2	7	4
CAAACGTATTGGGAGT	alt_285_RC	15	24	19	16	18	21	20	20	25	13
TTCCGTATTGTCCTTT	ref_285_RC	61	64	86	51	44	72	65	61	86	43
CTCAAACTGAGTAGGC	alt_285_RC	42	36	31	42	43	34	41	33	52	36
GCATGTCTGCGCTTCA	alt_285_RC	33	29	29	24	39	24	30	27	35	28
GTTCACTGTATGCACG	alt_285_RC	4	6	3	5	7	2	5	0	5	4
TTCGGTGGGCTTGGCA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCACCGACGGTC	alt_285_RC	8	13	10	6	6	8	16	11	12	5
GTGTCATTCACGGCAT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
AGGGAGTAAGGAAATC	alt_285_RC	10	7	15	12	18	10	17	13	9	9
AGCCTACAGGATCCTG	alt_285_RC	29	46	38	48	68	35	68	34	58	25
TATTACCTTAACAGAC	alt_285_RC	183	205	207	167	160	159	199	134	183	147
AGAATTTCGGTAGTTG	alt_285_RC	26	22	40	22	29	24	28	27	32	25
GCTCATCTAGGAGACC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CTTTAGGTTTGAGCCC	alt_285_RC	30	20	21	35	39	24	29	27	32	31
GTCTCGGTCATCCCTG	alt_285_RC	24	54	41	42	60	36	64	27	64	19
GACAGTTGTTCATAGA	alt_285_RC	64	96	72	62	73	62	101	54	81	47
ACTCGGCGCGCGGGAG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CACCTGGTTGACTTCC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GGGACTTATTCACTTA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TCAAGTACCATTTCCT	alt_285_RC	0	11	5	8	10	8	4	9	15	9
TAACTGTATTTGTACC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
AGACATATTAGCCGCT	ref_285_RC	53	58	64	60	66	54	74	48	68	47
GAATGTAAGCTCCACA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTTAGTGTCAGCCCCG	alt_285_RC	68	80	69	74	92	72	103	63	83	66
TGTCACCGGTATTCTT	alt_285_RC	5	22	12	9	26	12	24	12	29	13
GATCCTGGTACGCAGC	alt_285_RC	12	29	29	16	35	18	23	27	28	19
CCTGAATCGGTGTATC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
AATACTACAATACCGA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
ATAGGCCGCACACGAA	alt_285_RC	61	34	59	38	55	45	52	34	46	37
GGTACAACTTTGGCGC	alt_285_RC	48	48	63	34	42	37	53	38	43	42
GTCTCTGGACAAGCAT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GCCGACTTGAAGTTGA	alt_285_RC	64	74	78	71	83	55	100	73	98	60
GGGTAACTGGGTTAAG	alt_285_RC	33	46	58	45	52	35	42	40	49	37
CAGGTCAATCACAGTG	alt_285_RC	27	28	18	28	27	23	31	29	32	17
CGGGGGATTCTTTCTA	alt_285_RC	47	79	64	62	87	75	98	56	89	70
AGATGCGGCAGTCACT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
AGATAGTCACTTTGGG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
AAGTACCTATAGAGGG	alt_285_RC	17	22	40	36	34	23	20	25	33	13
CATGTATACTTTTTTA	alt_285_RC	11	17	17	21	12	16	22	17	29	14
ACTGGATCGTCGGTGT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGCTCCACCGCA	alt_285_RC	7	3	9	6	6	5	7	4	7	2
GCAAGACGAGCAGTAA	alt_285_RC	96	109	109	109	107	106	121	101	119	76
CTGATGGCGCAATCCA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTACGCTTTTAGGTAA	alt_285_RC	7	30	4	10	24	5	19	7	20	9
CCACGTTTACTAATAT	alt_285_RC	23	38	44	35	53	39	39	33	56	32
AGTCAACTCAACTGAA	alt_285_RC	10	13	16	16	11	12	18	18	17	14
TTTGAACTTTCAATCG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TGCTTATAAGCGAGCG	alt_285_RC	98	115	116	93	131	100	119	85	137	79
TTAGCTGGGTGGTAAG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
ATTAACTACGGCGCCC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
ATTTCTTTTTCATTCA	alt_285_RC	3	1	0	2	2	0	0	0	1	2
CGCTCCGGGTGTATGG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TCTCTAACTGGGCTCC	alt_285_RC	38	46	35	46	66	44	56	49	55	28
AACGGATATATATTGT	alt_285_RC	22	22	26	23	24	17	40	20	19	14
ACGTAAGTAATCGGAC	ref_285_RC	95	81	122	98	106	96	94	86	71	75
CTGAGTCCTTGATAGT	alt_285_RC	52	64	68	41	70	47	65	48	82	52
CACCCACCTGAATCTC	alt_285_RC	29	53	35	28	58	34	64	38	70	38
ATACCTCATAAGTACG	alt_285_RC	18	22	19	18	23	11	19	13	26	22
AACATAAAATCCTCGT	alt_285_RC	9	4	7	13	1	4	8	4	4	9
TCAGAAGCCAAGTTTA	alt_285_RC	19	15	19	12	17	17	11	19	17	8
CCCGGTGAAGTGCTTA	alt_285_RC	14	16	9	4	5	13	15	9	13	6
GCTGGAGACAACATTC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GCGCAAGTCATCAACC	alt_285_RC	11	17	16	15	17	7	15	6	9	5
TTCGTCCTGTGACAAC	ref_285_RC	44	84	55	61	106	38	78	33	104	37
TGACGTCATCTTTATC	alt_285_RC	2	3	2	5	4	1	9	4	2	2
TCAAGAGTTTACACCG	alt_285_RC	9	16	8	11	15	12	9	11	12	8
TCAAGGTCCGTTAACG	alt_285_RC	18	25	24	13	29	11	29	15	12	15
TCATTGTAAGTGATTC	alt_285_RC	93	161	126	107	131	112	120	131	159	94
GTAATTGAAACATTTT	alt_285_RC	35	30	49	44	42	29	40	27	41	25
ATCCATCTTTAGCTCG	alt_285_RC	17	19	45	27	43	22	32	32	33	27
AGGCCTTGGCCTTTTT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
TTCTAACAAAATGCTG	alt_285_RC	50	59	67	64	42	51	53	56	48	46
CGCATTGCGTCGTCCC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GGTGCCGCAGATCTTT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GATCGCCTTTTTATTT	alt_285_RC	79	64	83	80	64	69	75	60	83	64
CGCAGTTCGCACAAGA	ref_285_RC	8	9	6	7	17	11	8	13	18	8
GTACTCTTGTTCAGGC	alt_285_RC	60	92	88	82	86	59	94	57	88	73
TTCCTTTTGTCTCACA	alt_285_RC	220	227	246	225	255	225	241	204	267	227
TTCCGCCTGATGGGCC	alt_285_RC	19	15	21	19	20	11	17	21	28	17
GCTTGTCACTCACACT	alt_285_RC	15	10	12	7	11	9	20	10	14	7
TTCGGAACGGTAAATT	alt_285_RC	38	48	46	33	35	48	41	30	55	26
CCACCTCAGGTTATCA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
AAACGGATTGGTATGT	alt_285_RC	27	30	25	28	29	22	38	20	34	31
CCGACACTTTTTGTTC	alt_285_RC	19	20	14	16	26	11	22	14	30	20
CTGCTCCCTTACATTG	alt_285_RC	28	47	20	19	39	19	38	13	39	16
GGTCTTGAGCAGCGCG	alt_285_RC	59	87	75	75	106	69	90	57	81	58
GTCATCTTTGGGACAA	alt_285_RC	21	21	25	11	21	20	34	28	31	28
GGTCGGCCTCTGTGAG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CACGTTTAGTCAGCTG	alt_285_RC	36	45	42	25	32	15	33	18	36	33
GGTCTGCTGGCCAGGT	ref_285_RC	100	84	142	118	88	119	108	81	101	107
AATCCATCTACATATT	alt_285_RC	15	15	23	13	14	14	21	8	17	16
AACACTTTGTTAGTTG	alt_285_RC	46	77	76	64	87	43	76	69	65	42
TAAGACTCTTCTTTTT	alt_285_RC	20	19	25	9	5	10	13	23	31	5
TTTATTATGCAGTCCT	alt_285_RC	9	10	8	10	13	6	12	8	14	3
GGCATCTAGAACAGTT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CTGCACTTAGAGGCCA	alt_285_RC	34	40	36	30	32	41	37	33	34	40
TCTGTTATTTTATGTG	alt_285_RC	17	18	37	21	23	18	29	13	24	11
AATGTGGCGCGACTTT	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CAAACTCCACTGCGAA	alt_285_RC	45	78	70	53	67	43	72	55	104	39
GTGAATAGTTTCGAGT	alt_285_RC	7	10	15	20	19	14	12	7	8	7
TCCTACTGACCTATGG	alt_285_RC	0	0	0	0	0	0	0	0	0	0
ACGTTGATGTCTTGCT	alt_285_RC	0	0	0	0	0	0	2	0	0	0
AGTTGCAAAGCTCCTC	alt_285_RC	1	1	0	3	1	0	1	1	5	0
ATCCTTTTGTCTCACA	alt_285_RC	0	0	0	0	0	0	0	0	0	0
CTTTTGGTCATCATAC	alt_285_RC	18	14	25	23	16	11	21	23	26	11
AATTCGTGCGATAAGC	alt_285_RC	0	0	0	0	0	0	0	0	0	0
GATAATGACCTGTATT	alt_2989_upstream	7	3	18	13	4	12	3	16	6	10
GTATGTAAGTACCCCA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCCTTGCTTGATT	ref_2989_upstream	56	39	81	74	41	63	36	75	26	53
CCCATTAACGTCGCAT	alt_2989_upstream	77	38	103	78	36	68	30	69	34	58
TCTCGCCTCAGTCTAT	alt_2989_upstream	75	45	114	81	40	78	35	83	34	74
CGCTCTATACAGTCCG	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTGATAGTGGTTTTTG	alt_2989_upstream	114	62	151	161	48	119	51	125	64	96
GTTGATACTAAGTAAT	alt_2989_upstream	117	36	156	132	49	100	46	112	44	114
CTAGGGCCTGTACGGT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAAAGAATTCTAT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTTTCGGGTGCTC	alt_2989_upstream	100	34	104	124	27	92	31	87	54	62
TCGCTGGGGAGGTCGT	alt_2989_upstream	72	44	104	54	27	59	37	64	33	55
GCTGCGTACCGATTGG	alt_2989_upstream	6	1	4	11	5	4	2	7	4	6
TATTGTCTAGTGGTAC	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GATGGGGTTCCAAACC	alt_2989_upstream	53	25	86	66	19	53	20	79	24	65
CCCTTGTAGGACACCG	alt_2989_upstream	74	64	122	110	55	83	58	85	59	78
TTCTTAGACCCGCACC	alt_2989_upstream	182	108	284	244	120	212	100	202	143	157
CCAGCGAATGTTATCG	alt_2989_upstream	84	27	106	101	31	77	29	79	37	54
AAACGTCACGTGTCCG	alt_2989_upstream	576	198	677	556	205	510	221	493	208	447
AGCCGCTATTCACTTG	alt_2989_upstream	164	60	190	201	67	163	63	181	68	155
CGCTGCTCACCGTTTT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAGGGACTCACGT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTGGACCAGTTA	alt_2989_upstream	95	49	157	126	64	107	50	106	54	122
ATCTTCTAGGACTGTC	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTAAAACGGTGAT	ref_2989_upstream	207	84	232	206	91	226	93	191	94	156
TCTTTGCGCCGCCCTT	alt_2989_upstream	112	50	168	138	55	119	55	142	49	99
CCTCAGGCACAGCCAC	alt_2989_upstream	112	36	128	107	46	124	41	128	48	107
GTACTCCGGCTGCGGC	alt_2989_upstream	26	12	44	43	23	28	20	28	23	28
CCTTCCGTCCCGTGAG	alt_2989_upstream	3	9	5	3	5	4	6	8	4	10
AATAAAGCGGGCCCTA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GTCCCCCGGTTGCTGC	alt_2989_upstream	12	13	24	11	15	6	17	9	10	12
AATGCCTTTTAGTCCT	alt_2989_upstream	14	9	15	21	3	28	7	22	11	18
GCTATTTTCACCAATA	alt_2989_upstream	387	124	429	399	132	356	120	359	135	296
ATGTCAAGAGAAAGGG	alt_2989_upstream	18	7	20	18	5	21	6	19	6	19
GGATTTCCTGAAGGTT	alt_2989_upstream	48	20	53	62	25	53	23	64	7	53
AGGAAGAAAATGCACC	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGGCAATTTTATT	alt_2989_upstream	46	14	49	51	13	34	12	50	9	32
CAAGCAAAGCATTACG	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGTTTCCCAGAGA	alt_2989_upstream	75	28	114	70	24	86	34	85	33	89
ATGTATCCCGAGTCGT	alt_2989_upstream	210	70	283	219	67	178	75	180	83	170
AGCTCTTCGTTGCAAT	ref_2989_upstream	259	98	274	225	112	231	107	264	130	228
ATTGGTTCAATATCTT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCGACGCTGCTTGTAG	alt_2989_upstream	78	32	89	75	20	81	35	59	21	56
TTGTGATGGAGTAGGC	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CAACCGACTGAGTCGC	alt_2989_upstream	8	2	10	9	6	11	5	15	6	16
ATCGTCTTGTTATTGT	alt_2989_upstream	20	4	34	26	9	27	13	21	6	18
TCTAAACTGCCTCCTA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTATATGCCCTTACCG	alt_2989_upstream	181	90	253	176	75	149	75	159	73	169
GTACAGGTAGCCCTGG	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCTTGCAAATTCG	alt_2989_upstream	91	36	131	106	46	85	37	81	35	88
CCGTCCAATTCTTATA	alt_2989_upstream	21	19	14	19	26	11	19	9	16	17
GTATATTTGTCTGGGC	alt_2989_upstream	185	44	216	189	65	182	80	196	52	172
GCACTTCGATACGACA	alt_2989_upstream	62	17	83	75	26	53	16	46	27	52
ATTAATCGGGACGCCT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GACGATATTTACGCAA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTCGTACATTCAT	alt_2989_upstream	104	36	122	100	38	83	32	92	22	72
GCGTGGAATATTTCCC	alt_2989_upstream	4	0	3	5	0	4	1	1	0	1
GCGGACTCGTTCGTAT	alt_2989_upstream	899	338	1066	891	401	744	376	835	355	755
TTAGTTGCGGATGAAA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAATCGCAACATT	alt_2989_upstream	123	37	114	125	34	84	33	109	41	101
GTGTATAGCACGTTTG	alt_2989_upstream	286	118	344	305	124	270	104	282	113	267
GTCCTAGGAGACTATC	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCATTTTTCTAGAGAG	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTATACTGACAAG	alt_2989_upstream	13	11	20	24	6	19	7	23	14	24
GCCTCTGGCAGGCGAT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGCATCTGTCTTG	alt_2989_upstream	15	2	8	10	0	7	5	7	5	2
AAAGGTCGGATGGTAT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGTGATAAAAATC	alt_2989_upstream	115	47	154	132	45	114	41	116	50	97
ATGCAGTCTGCGAGCC	alt_2989_upstream	134	59	172	156	55	132	54	133	66	142
AGGACTAACCTTTACT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTGGGCCTGACCT	alt_2989_upstream	19	10	21	26	5	11	5	16	11	10
TTTTAGCCCCCGACCT	alt_2989_upstream	29	11	39	35	13	35	8	25	9	16
GTCAGCTTTCGTCTAG	alt_2989_upstream	0	0	0	2	0	0	2	1	0	0
CTGTTAGGATCGCGTT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCCGGTGGACAGG	alt_2989_upstream	50	28	79	51	20	54	20	66	17	45
AAATTACGATACTCTA	alt_2989_upstream	96	25	100	85	19	62	29	71	29	89
TCTACTAAATGCGCGA	alt_2989_upstream	8	20	27	7	40	8	33	9	46	9
AACGTACTCGACCCTT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGAGGATATCTCA	alt_2989_upstream	48	9	44	20	9	24	16	32	22	22
GGACCGGATTGTGTGG	alt_2989_upstream	133	72	197	152	64	122	73	142	44	103
GTAAGCCACCCTTTTG	alt_2989_upstream	152	72	180	198	59	140	75	176	87	150
GCCTTCGCATGAGCGG	alt_2989_upstream	26	17	46	30	7	43	21	30	17	32
GTGAGCCGCAAGGGTC	alt_2989_upstream	301	143	484	396	155	354	149	372	172	336
ATACGAGTACCTTCTT	alt_2989_upstream	109	26	112	102	30	76	51	92	46	96
CGTTGGGTTTGGAATG	alt_2989_upstream	26	5	21	29	5	29	12	28	13	27
TACGTTGCTGCAGCAG	alt_2989_upstream	12	1	6	9	3	11	1	5	2	11
ACACCTATCTATCTAA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTAGCCAGAGAC	alt_2989_upstream	293	121	375	307	111	285	117	275	141	222
ATATTAACATTGACGT	alt_2989_upstream	17	4	13	15	4	10	4	9	3	9
CGTATTTGTGTTCATG	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CAAAAAGTCTTACTTT	alt_2989_upstream	68	33	100	92	37	66	40	83	38	70
TATCTATGGATTGTGA	alt_2989_upstream	3	2	3	1	1	0	0	5	2	2
TGTTCCATCCCTGTTC	alt_2989_upstream	49	18	69	71	16	56	26	74	17	40
GATCACGAATTTGGCT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTGCACATAACGCATG	alt_2989_upstream	55	11	61	59	26	47	24	54	22	53
TTACCCGGTCTGCAAA	alt_2989_upstream	34	19	36	47	12	36	15	41	28	36
CGTCACTAAATGGCGG	alt_2989_upstream	66	25	96	88	25	68	25	65	34	60
AAGCCCAGCTCAATCG	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTCACCCGTATG	alt_2989_upstream	82	29	97	86	30	84	23	69	26	65
GGGTTGGCAAAGTTAG	alt_2989_upstream	133	44	151	134	43	116	43	103	46	123
TTTTTCGTAATCCATC	alt_2989_upstream	45	19	69	57	17	53	28	33	24	34
ATGGACAAGCTTTTGT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GATAAAAGGAGCCCTA	alt_2989_upstream	20	8	19	12	6	19	7	32	9	8
ATCGTCCGAATTCGGC	alt_2989_upstream	23	12	36	33	9	36	13	30	11	21
ATATCCGCAGGTGCCA	ref_2989_upstream	94	33	108	79	33	75	42	71	30	69
TCATCCCATCTGGAAA	alt_2989_upstream	0	0	0	0	0	1	0	1	0	3
TCGGTCTAATTTCACA	alt_2989_upstream	14	18	28	26	7	11	9	29	9	24
ATAATTTCTTTTTTTT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTCTTTGAAGGCT	alt_2989_upstream	55	31	75	72	28	54	19	60	34	45
AGTGAGTTGTGATCTT	alt_2989_upstream	136	54	170	128	43	117	61	138	55	97
ACACTTCTTGTATTGA	alt_2989_upstream	7	6	5	16	9	10	4	12	2	6
GAGGTGGCTGGGCTTA	alt_2989_upstream	161	68	204	172	70	193	69	189	64	176
TTTTAGTTGTATTGTT	alt_2989_upstream	297	104	388	304	117	270	102	290	105	228
ACCTGTACTCGTACTG	alt_2989_upstream	13	13	16	17	16	23	12	28	12	25
GGGTGCCAATTACCCT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTCGTTTCTGCC	alt_2989_upstream	229	99	323	264	90	262	87	248	107	214
TATCGGGGAATTCACT	alt_2989_upstream	227	79	255	230	70	217	79	204	77	219
GCTGTCAGTATTCGGA	alt_2989_upstream	37	10	43	35	20	31	11	33	19	21
TTCTGTTACTTCACCG	alt_2989_upstream	16	5	24	24	4	17	5	6	6	16
AGCTTTTCCACAATGT	alt_2989_upstream	63	38	104	69	22	60	25	60	21	83
ATGAGATTCATGGTAT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCAGGTCTGCTAG	alt_2989_upstream	166	62	202	163	71	156	72	166	65	155
TTCATTGCATCACATC	alt_2989_upstream	256	104	381	301	87	283	106	298	129	249
TCGTAATTAGCTGTTT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGCCTTATCCGCG	alt_2989_upstream	62	34	67	65	18	66	29	77	31	44
ACGGCCCCATGTGTCC	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCGTATCTTCGGGTTG	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGCATTATTAGTG	alt_2989_upstream	168	61	196	163	69	145	64	145	64	146
GCGGGGAATTCGCCGT	alt_2989_upstream	36	15	48	53	11	28	23	38	9	26
ACCGGTTCTTTTCCTT	alt_2989_upstream	44	75	58	65	98	62	76	52	84	45
ATATTTATTTTGGATT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTATTCTGCGCCA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCTAGCGCCTTC	alt_2989_upstream	108	32	142	121	29	90	49	95	40	79
CTCCCGCTTGTCCACA	alt_2989_upstream	46	20	63	66	49	53	44	49	31	52
GTCCGTAATCATATCG	alt_2989_upstream	45	16	50	43	17	43	13	43	31	33
CAGGCACTTCGGGATT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
GGTCAAACTAACCCAA	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
AATGCAATTCCGACGG	alt_2989_upstream	58	16	64	75	27	58	24	50	33	65
GCGCACCTTCGCGTAG	alt_2989_upstream	9	1	18	15	9	10	2	14	5	17
TACTCAGCCTGGCTGT	alt_2989_upstream	54	22	48	55	31	41	19	53	20	43
TCTCTATACGTTAAAT	alt_2989_upstream	39	12	46	28	18	23	14	27	11	33
CCTGTGTGTTTCTTTC	alt_2989_upstream	37	9	49	49	6	48	9	36	10	33
TCTTGGGATATTGCCA	alt_2989_upstream	143	46	159	136	51	118	34	125	58	119
CTTCCAGAAGTTCTGC	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGAATGGCTAATG	ref_2989_upstream	531	214	589	511	197	479	238	490	248	414
CGTCATTAATAGACTG	alt_2989_upstream	25	11	16	21	10	28	4	23	7	21
GGCTTTGTCCTTGTAT	alt_2989_upstream	47	10	53	42	11	32	10	27	15	34
CTAGGTTTCGTATTTG	alt_2989_upstream	31	18	38	30	22	28	26	29	10	21
GCCTGCTACATAGTTC	alt_2989_upstream	73	27	91	85	32	65	26	80	35	67
GTAATCTTGCTGCCTG	alt_2989_upstream	93	48	156	114	67	120	43	141	46	110
CGTATTAGCCAGAGCC	alt_2989_upstream	0	0	1	0	0	0	0	0	0	0
TTTCAAGGTTACCTGC	alt_2989_upstream	55	23	61	59	39	67	17	65	37	49
CATCAGCATTTAGAAG	alt_2989_upstream	151	65	161	187	66	179	72	200	84	167
GTCAAAGAAAAAAAGA	alt_2989_upstream	124	39	188	172	51	152	39	147	63	119
CATCAATATTTCGTGG	alt_2989_upstream	42	26	45	45	21	32	22	32	21	43
TACGTGTATACGTATT	alt_2989_upstream	0	0	0	0	0	0	0	0	0	0
ACTCACACCAGACTGA	alt_2989_upstream	35	14	71	49	16	35	16	45	14	35
CCTTTAGTGATTTCCT	ref_5553_RC	24	16	24	20	25	14	22	20	17	24
TTATGGCGTGCTGCGG	ref_5553_RC	12	16	14	16	16	8	16	12	14	16
CTTTGCTTCACGTCTT	ref_5553_RC	56	62	74	62	75	58	92	85	91	48
GGAGAGATCGGCATAG	ref_5553_RC	12	10	10	7	8	8	9	9	12	8
CTAATGGTCCCGCACT	ref_5553_RC	175	124	169	161	149	161	136	163	170	149
GGGTCTCAGGTCCAGT	ref_5553_RC	12	15	19	26	21	16	23	18	18	13
CGTGTACACTGCCAAG	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
CGCACTCACAATTGTG	ref_5553_RC	22	19	22	15	12	17	20	20	24	14
TTCATCTGTTTGATTA	ref_5553_RC	38	46	27	32	33	27	40	26	33	27
TGCCCCCAGATCACAC	ref_5553_RC	100	76	115	94	71	95	96	74	75	77
TCTATAACTGGCATTC	ref_5553_RC	27	23	14	16	16	15	22	14	17	18
GCCTGTGCCGAATTAC	alt_5553_RC	99	69	124	103	79	98	93	114	88	95
TGTTAAAGTCTGGTGG	ref_5553_RC	16	13	21	11	5	12	16	17	17	6
TAGCTCACCACACGAC	ref_5553_RC	2	4	3	7	4	5	4	3	3	1
TTGCGCGCAGCGGAGT	ref_5553_RC	50	63	59	43	52	60	63	55	59	46
ATATTGAATCCTGCCA	ref_5553_RC	6	9	6	7	4	11	10	11	7	7
TCTGAAGCTCAGGTGG	ref_5553_RC	27	38	35	27	27	28	41	30	32	33
CATTTAACAGCGCGTG	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
CTGCAGCATAGGTGCT	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
TTACTCATCCACCCTG	ref_5553_RC	76	67	86	74	58	66	63	52	70	69
GCTGAAACCACGCTCT	ref_5553_RC	10	22	21	20	21	13	11	23	19	11
AGTTTTGCCAATCTAT	ref_5553_RC	66	61	85	51	57	50	65	50	65	42
TCAAGCATCACAAACC	ref_5553_RC	57	50	68	53	72	48	46	57	67	42
TGGTTTATATGTACCT	ref_5553_RC	83	109	110	101	103	76	113	102	97	74
CCGTGAAAGTACTTCA	ref_5553_RC	54	58	53	42	54	55	48	45	72	42
ACGATTACACAATGCC	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
GTGCTGTGGACCCAAG	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
GTGGATCGCCACGGTT	ref_5553_RC	0	0	0	3	0	0	1	0	1	0
ATCGATAGTCTGCCCT	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
TCGAAACCCCGTCTTA	ref_5553_RC	37	101	68	76	134	53	122	54	140	49
CGGCGGGTGGGAAAAT	ref_5553_RC	74	61	76	61	76	69	66	66	84	64
CAGTTTGGTAACACGG	ref_5553_RC	13	5	9	4	6	6	5	9	5	7
ACTAATCTCTAATCGG	ref_5553_RC	135	154	135	156	160	110	160	134	146	117
GTCCTCTCTTCCTTCA	ref_5553_RC	4	0	6	2	1	2	3	3	3	2
TAGGAAGGTCATGTGT	ref_5553_RC	33	37	39	37	39	32	43	28	28	23
TTAGGACTACACTTCC	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGTTTAGCATGT	ref_5553_RC	32	30	27	46	35	23	35	32	40	28
GGGATTGGAGTTTTGC	ref_5553_RC	25	26	52	27	29	41	40	47	39	26
GTGTCAGCGTCGCGTG	ref_5553_RC	115	99	126	93	107	109	131	108	121	100
CTGCGTTAAGGCGTTA	ref_5553_RC	22	8	25	15	16	12	10	8	17	9
TTCTCGGCAGGCATGT	ref_5553_RC	87	70	109	110	84	94	81	78	100	75
TTGAGGCATGGCTTAG	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
CAAAGGGCTCCACCGG	ref_5553_RC	101	98	132	103	119	98	114	88	87	78
CGTGGCCCATGGCCGC	alt_5553_RC	12	6	16	11	11	12	11	14	5	10
GGGGAAATTCGCTTAG	ref_5553_RC	48	41	51	52	47	28	55	42	43	47
CCGAAATTTACGGGCG	ref_5553_RC	29	58	46	39	63	26	70	35	75	45
TTGCCTGTGCAATCGG	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
GCGACACAGGTTTCTG	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
GTCTGGGAGTCTGCGC	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
TCAATAGTACTACCGA	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
CTGTTCCCAAAGGCCT	ref_5553_RC	9	7	17	10	15	12	15	12	8	11
TCCAAACCTGGTAGTG	ref_5553_RC	38	44	44	41	55	30	48	30	42	27
TCTGAGACGTATGGTT	ref_5553_RC	34	45	53	32	36	26	35	34	25	28
TCTGTCGAGGTTACCT	ref_5553_RC	32	24	36	37	33	26	31	36	43	34
GTCGTTTATTAGCAAG	ref_5553_RC	21	21	16	25	10	25	27	13	21	21
CGGTGTGCTCGGCGGG	ref_5553_RC	25	26	13	15	29	7	26	19	32	5
GAGCAAGATATTAATT	ref_5553_RC	23	32	39	28	36	25	37	15	29	31
GTGGTCTCAGTCCTCG	alt_5553_RC	130	86	153	105	114	112	107	107	134	83
GAAACCAAAATTTGTA	ref_5553_RC	108	132	113	122	139	102	112	87	131	105
ACGGGGTACGCTTGTT	ref_5553_RC	24	32	26	31	30	19	25	27	48	25
TCACAGTAGTTTGTAA	ref_5553_RC	49	47	61	41	73	37	48	42	69	52
CGGGTCCGCGAAAATT	ref_5553_RC	47	53	56	45	55	38	55	59	54	46
CTTTACCTATCAGCTT	ref_5553_RC	24	27	32	28	30	40	27	24	43	25
CAATCTAAAAATGACG	ref_5553_RC	6	2	7	3	11	5	7	8	6	7
CATGCATAGTTTAGAT	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
TTGCTTATAGACTGTG	ref_5553_RC	44	36	39	31	39	35	53	21	44	29
CTGGGCAAGCGCAGAG	ref_5553_RC	18	15	21	12	17	15	14	14	22	13
GCATAGCGATCTTTCC	ref_5553_RC	57	70	81	63	49	68	51	41	62	60
AAATATTATTGCCTTT	ref_5553_RC	101	78	137	82	87	103	68	85	78	70
AAATTGCTATCAGCCG	ref_5553_RC	109	113	96	93	87	84	103	90	98	88
AATTTGTGTTTGTATG	ref_5553_RC	5	8	11	4	2	7	4	6	5	10
GGGAACCGCACACATC	ref_5553_RC	38	36	34	27	41	29	47	31	38	23
GGCTTTAGGGCTTGGG	ref_5553_RC	0	0	0	0	0	0	0	0	0	0
TTGGGGAAATCGTTGT	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
CGTCAAGCATCTATTT	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
CTATATGCAGTTACGT	ref_5403_fdr	158	61	205	184	56	186	59	156	54	150
TACCTAGGAGCGAGGA	ref_5403_fdr	264	49	321	283	59	244	75	309	67	252
GCTCCGTATTGTGAAC	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
TGTATCTACGCGATTC	ref_5403_fdr	123	33	172	141	33	132	33	135	41	131
TCTGACACTAATGGCT	ref_5403_fdr	169	39	200	178	35	139	48	152	39	134
GCACCGACAACGAACA	ref_5403_fdr	267	57	370	327	74	302	75	253	70	250
CTTATTATCATTGGCT	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCTTGAGTTTTGC	ref_5403_fdr	126	24	149	152	38	106	32	144	25	115
GGGAAGCATCAGAGCT	ref_5403_fdr	258	49	283	238	77	243	51	191	56	196
TCTGCATCCCGCGGTG	ref_5403_fdr	345	110	488	421	122	363	105	371	112	343
CACATCTAATGCGATG	ref_5403_fdr	116	35	115	105	32	90	35	79	28	72
CCAATGGTTGCTGCAC	ref_5403_fdr	94	13	102	115	19	101	14	112	30	70
CTTGCTACCTATTACT	ref_5403_fdr	117	48	137	146	25	124	24	128	24	103
CGGGTATATGCGTTAA	ref_5403_fdr	151	32	184	139	39	123	35	114	47	108
TGGCAGGTTTGGTAGT	ref_5403_fdr	195	54	220	213	50	201	53	199	56	162
AAACAATCAGGGGATG	ref_5403_fdr	93	24	120	114	22	79	22	102	12	88
TTAGTGCGAGTCATTA	ref_5403_fdr	237	63	252	209	69	197	60	201	58	183
AACTTGATTATTCCTT	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
ATCATCCACGCATCCT	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
ATTCATCGCCAGCCGT	ref_5403_fdr	96	22	112	124	28	123	25	101	18	93
GTAGCTCAACACACGC	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
ACTGACATTATTGATC	ref_5403_fdr	25	2	31	48	5	19	6	14	2	20
TGCAATTACAACGCTC	ref_5403_fdr	87	29	119	103	35	103	25	90	27	86
TGTTAATGTATTTCTC	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
TCAAAGTACCTTGAGG	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
AATCGCAGTCCATGAG	ref_5403_fdr	453	99	473	418	133	411	93	412	119	400
CCAAGTCATATCTTTT	ref_5403_fdr	38	9	57	41	9	44	21	45	9	31
CTCAATCGGTACTTAA	ref_5403_fdr	199	58	204	203	55	164	79	182	56	142
CGGGTGGTGACCCCCT	ref_5403_fdr	277	61	388	366	94	287	68	292	78	273
CTTATCGTTTGTTGGC	ref_5403_fdr	523	93	609	549	99	487	91	522	123	446
CTTGTTTGTCGTTGGC	ref_5403_fdr	213	64	259	183	62	201	55	172	57	184
CCCTGCCGACTTTGTC	ref_5403_fdr	107	78	126	120	77	92	49	103	89	102
AGGTTCGAGACGGCAT	ref_5403_fdr	147	26	164	145	30	146	36	135	38	114
CCTATAGAATTTCCAT	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTTTGACCCTAGT	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCAAGAATAACAG	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTATTGAGCTTCT	ref_5403_fdr	737	150	918	796	170	743	179	744	167	669
ATTGGAAAGTAGTTTG	ref_5403_fdr	279	79	358	321	78	260	76	278	79	255
AAGGTCCATGCTCCGG	ref_5403_fdr	197	45	304	239	72	200	49	194	65	197
ATGGGAATCGACATAT	ref_5403_fdr	198	50	254	207	46	192	55	202	36	192
TACGTTGGGGCTAGGA	ref_5403_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGTGAATGCCTGC	alt_5403_fdr	139	35	149	134	34	112	27	137	28	106
CAGTTCCCTGTGTCGA	ref_5403_fdr	57	17	78	81	21	66	16	74	17	44
TCGTAGAGGCGTAGTT	ref_5403_fdr	58	10	60	54	14	45	8	40	11	43
CATACGGCGAGTCCTA	ref_5403_fdr	310	66	382	307	80	314	73	308	87	304
GAGCGTGGGTGTTTTG	ref_5403_fdr	594	134	809	612	172	594	144	596	150	504
GCGGGAGATCACACTT	ref_666_RC	0	0	0	0	0	0	0	0	0	0
AAACTGATTGACTCCG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
CATCTGATCCCTATGA	ref_666_RC	0	0	0	0	0	0	0	0	0	0
GTATTACTTGGTATTC	ref_666_RC	88	39	104	69	58	73	54	83	42	73
TTGCGCTCTATCAACC	alt_666_RC	242	426	270	218	475	200	479	212	486	214
TTCCATCAAGGTTCCT	ref_666_RC	134	79	163	163	80	127	77	130	60	117
ATTATACGGCTTGTAC	ref_666_RC	30	6	33	31	17	29	10	29	14	33
GAACGGAGCACTTTTA	ref_666_RC	322	129	405	342	148	289	159	307	157	296
GTCTACCATCGTATCT	ref_666_RC	47	24	76	74	35	50	24	55	32	48
ATTAGTCCTTTCTTCG	ref_666_RC	101	44	112	91	61	98	56	92	50	83
TCGCCCATGTATTTCC	ref_666_RC	0	0	0	0	0	0	0	0	0	0
TTTTAATCTTTGTCCG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
TGGTACTGCTGCAAAT	ref_666_RC	102	50	153	118	53	97	46	105	58	87
CTTCCTTGAGGTTTCG	ref_666_RC	128	52	132	120	47	100	56	96	68	77
TCGATGCCATATGGCC	ref_666_RC	46	24	51	46	23	36	24	51	32	41
TCTGCGAATCTATAGG	ref_666_RC	126	57	134	145	81	104	57	113	68	110
TGCTAGGCAATTTGGA	ref_666_RC	0	0	0	0	0	0	0	0	0	0
CGCGACAGGAGGCGCG	alt_666_RC	32	81	38	27	64	42	87	32	101	32
CCGTGGGGCCATGCTA	ref_666_RC	71	47	97	67	29	75	44	72	47	71
TTTTAGGTGATATTCA	ref_666_RC	177	90	219	208	95	157	97	158	85	174
GTTTCCAGATTGATAG	ref_666_RC	25	10	31	38	21	30	18	48	15	21
AATTGGGCCGAACGAG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
GCGTTATGCCCCCCTG	ref_666_RC	56	20	63	54	25	43	20	59	28	46
TCTGGGTATGGGTTTA	alt_666_RC	51	114	64	60	91	55	103	27	126	56
AGCGGCTGTTCGTCGG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCGATCCCTTGT	ref_666_RC	0	0	0	0	0	0	0	0	0	0
TGCTCGGCACCTCCGC	ref_666_RC	88	44	103	104	43	88	59	72	52	65
CCTTTTTGGGATCGTT	ref_666_RC	187	120	269	235	102	229	128	193	127	205
AGGACCGCCTCCGGCG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
CCATAGGCAAGTGAGG	ref_666_RC	83	43	75	68	46	79	49	71	47	67
TTAGATTTGCTGACGT	ref_666_RC	54	20	49	40	9	59	19	47	20	36
TTGCGTTCAGTACGAG	ref_666_RC	202	121	229	195	106	182	102	211	119	151
GTATTCTAAGTGTTGC	ref_666_RC	25	9	33	21	8	21	9	12	19	19
TACCGTTCCATTTGCA	ref_666_RC	327	153	352	330	175	287	139	289	169	281
CATGCGAGTATCGCAC	ref_666_RC	43	26	37	50	17	36	24	35	30	38
TAGGGGTTATAACTGT	ref_666_RC	0	0	0	0	0	0	0	0	0	0
GTCTGAATGGGAATAG	ref_666_RC	12	12	27	31	6	19	6	25	11	19
GTTTGTACTCGAGTGG	ref_666_RC	77	46	101	86	40	83	37	74	54	83
CAAGTCGTCCACGCTA	ref_666_RC	265	120	329	294	133	273	125	266	150	260
TGGTCTTTTATGCCTC	ref_666_RC	33	26	26	22	35	16	36	17	41	17
GCCTACTTCTAAGACA	ref_666_RC	23	10	17	26	8	19	10	27	11	28
TAGCGCAATCACTTGT	ref_666_RC	61	40	104	56	29	63	41	45	30	46
GCTCTATGACCTCTAA	ref_666_RC	13	13	21	14	9	14	14	13	9	8
ACAACGGTGCTACGCA	alt_666_RC	14	16	49	30	12	38	22	32	17	17
CTTATAGCATCCCATC	ref_666_RC	0	0	0	0	0	0	0	0	0	0
CTTTCCTGCCCAGACC	alt_666_RC	36	81	68	49	88	49	90	50	121	41
AGTTACTGGACCGCCT	ref_666_RC	465	246	624	530	272	482	279	453	274	431
ACGTTATCGTTCGTGG	ref_666_RC	52	30	52	49	26	54	36	53	22	45
TTGACAAGGTCAGTAA	ref_666_RC	37	18	36	39	19	47	23	51	20	33
TAAGTACCCTATGTCC	ref_666_RC	71	27	99	56	30	77	18	71	31	78
AATCCTATAGGCTTGG	ref_666_RC	66	28	73	84	22	47	28	47	36	55
CTGTCAAGTTTCAACC	ref_666_RC	16	1	13	7	5	13	3	9	7	8
ATTCGTTTTTCTTCCT	alt_666_RC	39	7	34	32	12	35	7	23	9	24
GCCCCAAGTTTTAAAG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
TTTTATTAAGCGACTG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
TGGTATTTTATATCTT	ref_666_RC	103	58	183	149	37	114	45	114	55	102
GCATTGTGGTATTGCA	ref_666_RC	205	119	290	272	106	225	116	231	143	203
GGTCAAGTTTATACCG	ref_666_RC	20	21	39	22	20	21	9	23	18	27
TTATTTTGGGCCATTC	ref_666_RC	394	186	536	398	180	363	170	392	177	339
TAACATACTTCGAACG	ref_666_RC	177	69	195	170	83	154	71	150	81	124
GGGGGTGGAGGAAATA	ref_666_RC	11	7	22	14	3	21	7	13	9	12
ATTCCTCTTTGAAAAT	ref_666_RC	0	0	0	0	0	0	0	0	0	0
GATCGACTCCTTTGTT	ref_666_RC	9	7	11	15	7	14	16	9	11	5
TAATCAAATTTTTATT	ref_666_RC	420	185	487	393	170	407	199	388	186	343
TCCGTTGCTCAAGACT	ref_666_RC	40	23	51	41	20	54	26	54	20	44
TGTTTTCGCCCCCTTT	ref_666_RC	117	37	113	114	42	104	42	92	60	89
CCAAGGCCATCGCGTT	alt_666_RC	1	1	1	0	8	1	3	1	2	0
TCTATACTGACTCTTG	ref_666_RC	47	30	68	46	32	47	28	59	49	54
AGGGTCAGGAAGATCA	ref_666_RC	22	5	21	10	6	11	11	10	5	10
CCGAACCCTACGCCAA	ref_666_RC	5	25	15	21	25	17	23	12	26	6
GTTCCCTAGGTCTACG	ref_666_RC	4	4	9	4	3	3	6	2	0	7
TTCAACCACGGAAATT	alt_666_RC	0	0	0	0	0	0	0	0	0	0
AGTTCCGGGCTCGGTT	ref_666_RC	116	57	125	122	63	103	47	91	50	96
AGTTTTCTGGAAAAGC	ref_666_RC	305	188	422	310	159	298	183	305	183	289
GCAACGGCATAAGTGG	ref_666_RC	74	23	72	68	18	54	28	63	23	65
CTATCCATTGAAAGGG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
CCTAAATACGCTCTTT	ref_666_RC	16	10	21	18	7	26	16	15	13	15
GGAATTATAAGCTTTA	ref_666_RC	0	0	0	0	0	0	0	0	0	0
GTTAAGCCGCCATCAG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
CACTCATTGTCGCTCC	ref_666_RC	133	114	170	153	92	119	103	142	98	122
AGCGATCCTACAACCA	ref_666_RC	135	80	169	166	75	149	94	144	94	151
TCTCCCTTCAGTCCGG	ref_666_RC	20	32	22	20	24	20	36	21	38	19
TTTTCTTTACGTCCAA	ref_666_RC	108	56	178	144	69	128	72	130	58	100
CGCTCAGCCGTTGGGG	ref_666_RC	0	0	0	0	0	0	0	0	0	0
CGTGCTGTCTTTCGGC	ref_666_RC	11	4	27	16	15	15	9	19	7	19
GTTTGCCTTTGAATGG	ref_666_RC	135	58	138	127	59	115	52	114	72	119
GAATTACGATAAGGTG	ref_666_RC	300	173	373	363	134	284	172	266	174	255
TAGATGGAGTCTAGAA	ref_666_RC	0	0	0	0	0	0	0	0	0	0
GGCAAATAATTACCGC	ref_666_RC	28	7	26	17	10	26	17	16	9	23
GTTTCCGTAGCGCAGA	ref_666_RC	39	17	48	31	13	46	11	27	23	31
TCCTTATTTTTTACAT	ref_666_RC	445	199	498	484	182	450	207	391	207	380
TTTATGGTGCTGAAGA	ref_666_RC	80	31	92	85	33	69	32	84	48	62
GTTCGGGATCGGGGGC	ref_666_RC	63	32	91	86	34	81	35	81	45	69
CTATTATTCCACGACG	ref_666_RC	92	59	119	90	38	75	46	92	64	87
ACTTTCCTTATGCTCC	ref_666_RC	87	48	118	87	27	106	47	74	40	89
CTGGCAATATTGCGCT	ref_2099_fdr	14	7	8	10	15	17	17	7	17	7
GCTACGGGGCTTGCTC	ref_2099_fdr	10	23	21	11	23	20	26	14	15	21
CCGTTTCGTTTGAATC	ref_2099_fdr	21	14	24	16	21	19	20	18	19	17
TTAATCTCGTACGTAG	ref_2099_fdr	162	191	179	113	151	153	153	131	165	128
CGTGAAGGCCTGTAGA	alt_2099_fdr	223	311	299	220	323	256	302	211	362	194
TAACGGAAAAACAGCG	ref_2099_fdr	120	120	134	120	113	89	149	93	134	107
CCTCCCAGGTGGAAAT	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
GGACCGCTAGGTTTTG	ref_2099_fdr	15	19	12	15	16	20	18	9	13	12
AGCTCTGTCTTCATTT	ref_2099_fdr	7	8	4	2	4	4	5	4	7	6
TTTGCCTTGCCGTCTT	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTATTCTCCCTA	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCCCGTTTGAGGC	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTACCATGTCGA	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGCGTTTGTTCTC	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TAACCACCAGTTTCTT	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAATCTAGAACAG	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
GCCACGGCACTACCGG	ref_2099_fdr	47	37	57	64	62	43	43	58	65	50
TACTGGCAGGATATTG	ref_2099_fdr	4	6	7	0	8	0	8	3	7	4
TATTTTAGTCCGAGGG	ref_2099_fdr	131	132	145	135	140	107	156	111	129	122
TGCCCGTTTACCAGCT	alt_2099_fdr	122	142	142	107	150	119	159	96	150	84
AAGGCCCCGTTTTCCT	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCCGGAACGCATT	ref_2099_fdr	93	124	120	113	136	88	138	94	129	77
ATTTCTAGTTGTCCCA	ref_2099_fdr	15	25	27	23	18	23	35	20	22	24
TAACGTGTAGGCTGCT	ref_2099_fdr	87	83	99	93	87	95	105	70	92	86
CGATCTGTGGACTCGC	ref_2099_fdr	102	76	117	75	108	88	94	87	91	79
TTAGGCCCCAAGGGTG	ref_2099_fdr	2	0	8	4	1	2	2	0	2	3
TCGACATGAGCCTGAT	ref_2099_fdr	22	23	32	22	36	24	40	21	38	30
TGTGTTGGATTTACTG	ref_2099_fdr	23	20	38	33	37	30	40	17	26	18
AACGCTAACACTGTTT	ref_2099_fdr	64	64	76	58	55	64	71	57	59	58
CGTACTGCTTAAATGC	ref_2099_fdr	69	51	59	62	68	57	68	41	76	67
TATGAGGCTAGCAGTG	ref_2099_fdr	88	126	126	115	114	91	93	105	115	97
AGCTTTGATATCGCTC	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TACTTTGTGGGCGACC	ref_2099_fdr	5	5	12	5	4	3	5	3	3	3
GGGGTTGGTTTTGGTT	ref_2099_fdr	13	16	28	16	12	10	15	18	16	15
CCGACCGTACATGGCC	alt_2099_fdr	247	278	267	220	211	224	277	215	287	231
GCGCTTCATACGCAAT	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
CCGGGGCATTGTTAAT	ref_2099_fdr	6	11	12	13	15	12	12	16	9	13
ACGTCTTCCACGGTGT	ref_2099_fdr	15	15	9	10	12	3	8	8	13	11
GGATGTTAGGGCTATT	ref_2099_fdr	71	67	78	63	55	54	64	72	66	63
ACCCGCGGCGTTCCAG	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
CGCATTTCTCGCAATG	ref_2099_fdr	4	8	7	0	4	4	7	0	1	4
CACTGTTCCTCACAGG	alt_2099_fdr	338	433	390	295	457	302	450	291	448	279
GTAGCTGTAGTGGTCT	ref_2099_fdr	108	123	131	117	137	112	113	129	130	95
GAACAATAATTTCGCT	ref_2099_fdr	0	0	0	0	0	0	0	0	0	0
TTATACGACCTCCTAT	ref_2099_fdr	51	47	86	66	66	70	69	36	57	51
TGTGTGGACTCCCGTC	ref_6047_new	1	7	4	2	1	2	2	1	4	2
CCTCAGTGACCTTTAA	ref_6047_new	12	15	16	12	11	11	18	10	13	8
TAAGATCATTTTAGTG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
TCTGTGGAGTTTTAGT	ref_6047_new	4	13	12	6	21	4	16	2	7	4
AGTAATGCTAAATTGG	ref_6047_new	32	33	37	33	47	35	53	27	54	36
AAGACTACATAATTCT	ref_6047_new	18	18	25	23	30	10	31	13	34	17
TTAACTTCCCGTGTCT	ref_6047_new	9	10	8	9	16	6	16	14	23	9
ATCGTTACGCCCCTTG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
TTTTTAATTGCTTGAT	ref_6047_new	5	14	10	11	15	6	10	6	17	2
GCAATTCTAACTTATG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
TTAAATCCCTTTGTTG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GCCGGTGGCGGTTCAT	ref_6047_new	26	54	39	23	53	26	58	32	61	22
TCAACTTCTTGTCTGC	ref_6047_new	151	215	189	160	173	192	223	115	204	135
GCAAGTGTTTTTCTCT	ref_6047_new	4	1	1	4	4	3	2	0	6	2
TCCGGACCCGCTCCCA	ref_6047_new	11	21	26	21	16	14	20	15	43	9
TTCTGGCGCGATGTGA	ref_6047_new	34	41	32	40	58	33	48	35	51	23
CCAATTTATACCAGCC	ref_6047_new	48	79	58	48	71	50	79	51	86	45
CTGTTCGCGGGGCCCG	ref_6047_new	28	20	20	11	27	13	27	14	20	14
GATACGATCACTTTTA	ref_6047_new	31	44	43	44	45	37	49	36	66	24
ATAGTGGGCGTTTTTG	ref_6047_new	1	4	1	4	5	2	2	1	2	3
TGATCAGCTGTCATGC	ref_6047_new	24	30	21	22	38	27	43	17	44	20
GGCCGTAACGCGAGTG	ref_6047_new	1	4	3	5	4	4	4	1	4	2
GGACCGCATTAGGTGT	ref_6047_new	19	20	7	8	19	4	18	6	19	9
TTGTAATGTACATATT	ref_6047_new	149	245	213	150	213	132	254	115	313	160
TTGATCGCGTATCTGC	ref_6047_new	9	16	11	8	19	4	20	5	22	9
AGTCATACGCTTGAAG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
TTGACTGTACCGAAGC	ref_6047_new	58	85	70	44	72	60	68	55	71	40
GATGGCTTTTGAGGCA	ref_6047_new	35	54	39	27	49	30	58	29	53	29
TCCAACTGTGAACACT	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GTATGGGCAGTCAAAG	ref_6047_new	15	19	15	14	28	15	20	15	16	19
GCCGTAGGGACCAGAT	ref_6047_new	8	13	12	10	15	16	27	9	13	2
CCTAAGTTTGCGAAAA	ref_6047_new	9	16	18	11	25	7	26	5	32	6
ATTATACGCCGTCCGA	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GGCCAATTGTGTTTAC	ref_6047_new	3	7	2	8	6	1	8	5	6	5
TGGTTATAACTTCAGC	ref_6047_new	0	2	1	1	2	0	0	0	0	1
TTGTGAGCGGCATCTA	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GCTAGTCTTCCACGGT	ref_6047_new	152	262	173	152	234	141	254	141	242	158
GGCTCAATTGCCCAGA	ref_6047_new	0	0	0	0	0	0	0	0	0	0
ATTTGCCATCTTATGA	ref_6047_new	43	58	54	56	81	44	74	47	72	31
ACCTTTTGCATCGTCG	ref_6047_new	38	63	56	35	81	37	61	40	92	41
CTGATTTTGGGATTCT	ref_6047_new	51	51	54	50	47	36	48	36	66	22
GGCTTATCAACACCCT	ref_6047_new	76	104	62	79	90	51	109	65	92	60
GATGATGGCGCTAACG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GTTGATTAGGGTGGTT	ref_6047_new	93	167	148	111	158	108	197	110	198	78
ATTGTTGTGCCCGCCC	ref_6047_new	0	0	0	0	0	0	0	0	0	0
ACATGGCGCATCCAAT	ref_6047_new	14	20	11	9	23	16	28	12	25	13
ACAACGCAGAATAGCA	ref_6047_new	37	52	40	36	64	29	70	36	74	34
TCATAGCCGTTCACTG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GAGGTTATTGTTGGTG	alt_6047_new	5	7	4	2	9	3	6	3	16	4
TCGTTACACTTGAGCC	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GACTTCGTCGCCCATC	ref_6047_new	33	58	60	53	53	41	59	41	54	37
CTTATTATGTTCCGTT	ref_6047_new	0	0	0	0	0	0	0	0	0	0
TGTCATTATACTTCCT	ref_6047_new	30	36	28	29	47	24	52	28	54	24
TAAAATAACCACCCTT	ref_6047_new	38	85	53	34	93	34	90	42	85	43
AGAGCAAGCCCTCTTG	ref_6047_new	31	41	38	41	49	34	42	39	50	31
GTTGTTAACCAGTGCA	ref_6047_new	5	10	5	3	11	4	7	6	6	4
ATTGTAAATTAGCATG	alt_6047_new	15	28	16	17	29	19	34	16	21	18
CGTCGAAAGCGACTCC	ref_6047_new	30	36	37	18	44	11	25	17	35	17
TATGGTCCTCAATTGC	ref_6047_new	26	43	41	20	68	27	45	24	55	22
TCTTTATATTTCGTGG	alt_6047_new	24	46	50	19	44	19	48	17	35	24
GGACATACCGACTGGC	ref_6047_new	0	0	0	0	0	0	0	0	0	0
CAGTTCAATTACATAG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
CATGCTCATTTTCCGG	ref_6047_new	2	8	5	5	6	2	9	2	13	4
CGCATCTCGGACGATC	ref_6047_new	0	0	0	0	0	0	0	0	0	0
ATGCCGTGTAATTCGG	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GAACGGTCCTAGATTC	ref_6047_new	0	0	0	0	0	0	0	0	0	0
CTACCGTCTTCCCCTT	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GGGAATTGCCTCCTTC	ref_6047_new	29	71	43	34	60	40	73	31	77	38
TATTCAGCTGCCATCC	ref_6047_new	35	67	53	34	72	41	85	41	55	34
CTTCTAAATGTCATTA	ref_6047_new	6	4	4	9	8	4	9	1	7	2
TTTGGTAATGTTTACT	ref_6047_new	10	11	14	14	12	5	15	9	11	7
ATCCTTCTAATCACAA	ref_6047_new	0	0	0	0	0	0	0	0	0	0
ATTTAACCGCGCCCCA	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GCGTATCTTTTTTTTG	alt_6047_new	54	84	68	50	88	44	70	46	59	44
TCATGATATGTTGTGA	ref_6047_new	29	43	45	34	31	24	56	36	53	27
AGGCGGTGGTAGTTTT	ref_6047_new	48	75	62	39	74	31	72	39	89	39
CTCGTGATGGTTGGTC	ref_6047_new	34	36	32	39	24	29	43	22	58	16
CTCGCCCCTAGCAACT	ref_6047_new	12	11	14	10	12	5	16	5	17	7
AGTATGATGGAGCCGA	ref_6047_new	14	34	14	21	27	22	29	9	27	14
AGTGGCATCCGATCCG	ref_6047_new	13	16	14	22	24	9	10	15	19	8
CCTGCGTTTTTGTATG	ref_6047_new	5	8	4	4	8	7	10	4	8	3
CGTTCGGTGTCTCACA	ref_6047_new	9	23	9	16	29	25	18	8	22	12
CCCTGTATACAGTGTA	ref_6047_new	23	80	29	28	84	22	105	31	91	27
TTTCAAACAGAGGATC	ref_6047_new	10	21	11	4	12	5	27	7	11	10
GCATTATTGAACTAAG	ref_6047_new	56	91	55	45	52	34	65	45	95	43
ATCCGCGCCACTGAAT	ref_6047_new	0	0	0	0	0	0	0	0	0	0
ATTGAAAAACCACTTT	ref_6047_new	66	103	69	71	105	60	129	45	118	61
GAATACGGCTGGACAC	ref_6047_new	0	0	0	0	0	0	0	0	0	0
ATGTAATGTACATATT	ref_6047_new	0	0	0	0	0	0	0	0	0	0
TGAATGGATATTGGGA	ref_6047_new	0	0	0	0	0	0	0	0	0	0
GGAACGCTTTGTCTGC	ref_6047_new	17	43	20	25	31	20	43	25	48	19
TCCAACGGGAAGTTCT	ref_6047_new	0	0	0	0	0	0	0	0	0	0
AATTCGCCTCCCCACT	alt_1261_fdr	0	1	2	0	3	6	1	5	7	1
TTTGTATGAGGCAGTG	alt_1261_fdr	26	38	28	19	39	15	42	18	44	23
CGTGTTCGACACAGAC	alt_1261_fdr	24	25	21	18	21	12	20	19	35	15
TAGTACCTGTTACTAT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
CGTGAAATAGTACCGC	alt_1261_fdr	22	24	27	17	32	21	28	14	38	19
GTGGGTGGGGACTACT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
GGACTATTTCCCTCTT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCACCTATAATCCAAT	alt_1261_fdr	21	37	20	30	32	17	50	19	51	17
GGCCCTGGCGTAGTCG	alt_1261_fdr	204	296	242	204	286	219	306	199	280	190
TGGGAAATATATAGTC	alt_1261_fdr	16	28	22	13	16	16	27	11	21	12
TCGATTGTTCGGCAAT	alt_1261_fdr	29	20	30	28	26	13	28	31	40	27
ACTCTGTATAGTTATT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
CACAGGGGGTTTCCTT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
CTTACATTTGCCCTGC	alt_1261_fdr	3	9	6	3	3	3	8	8	12	2
TAATGGCTGGTATGAT	alt_1261_fdr	22	41	26	35	31	33	28	27	39	35
AAGGGTTTTGTGAAAG	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TATGAACACGGTGTAC	alt_1261_fdr	10	18	24	15	30	14	24	20	28	12
TGAACGGCGCTTTGGG	alt_1261_fdr	13	17	12	12	21	4	22	9	14	11
TTACTGCATGGCACTT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCTTTATACAACT	alt_1261_fdr	107	210	144	150	220	89	194	100	225	98
CCCAGCTTCGAACGAC	alt_1261_fdr	18	16	21	12	26	12	31	13	23	18
CGCCTCGGGCCGTAAA	alt_1261_fdr	3	4	2	2	3	2	2	1	4	3
TTGGCCTGTGTGTGTA	alt_1261_fdr	14	17	24	19	23	12	19	12	39	15
AATACTACATTATGTG	alt_1261_fdr	4	6	4	6	9	1	3	3	3	2
TAGCGCATGGGGCACC	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
ACCGATGCTTCGATAA	alt_1261_fdr	21	45	33	17	37	19	55	24	44	21
CGACCGCTTTGCCTAA	alt_1261_fdr	6	16	3	10	15	1	17	12	18	14
GTGCTATTGATGCGGC	alt_1261_fdr	68	109	94	67	111	83	97	69	95	78
GCGGCGTTACGGAGAC	alt_1261_fdr	13	25	20	22	23	16	32	14	25	21
ATTATCTCATCTTTCA	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTTTAAGGCTTC	alt_1261_fdr	36	43	34	28	36	30	48	31	43	19
ATTCGTTTCGGAACGG	alt_1261_fdr	59	67	66	57	59	44	75	52	70	55
CTTAACTTAAGCTGTG	alt_1261_fdr	16	27	17	20	24	10	26	27	30	20
TTAGTTATTTAGTTAT	alt_1261_fdr	1	3	5	2	11	3	8	3	0	0
ATACTACAGCGAGGAA	alt_1261_fdr	14	26	19	14	22	15	24	10	24	10
TAGTAATCAGATCACG	alt_1261_fdr	10	12	13	5	7	6	14	7	8	5
GACAAGCTTCTTGCGG	alt_1261_fdr	10	15	10	8	16	12	12	2	16	12
GCGACAGTGATCTGAG	alt_1261_fdr	89	120	108	120	141	125	145	94	160	87
AAATGAAGCGTCGGTC	alt_1261_fdr	8	8	10	6	9	11	3	10	10	6
CCTTGTGGATCGTACC	alt_1261_fdr	20	31	15	21	18	21	23	17	27	15
TCATTGTTTTGCTCAC	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGCGTGTATCCGG	alt_1261_fdr	5	13	10	6	8	11	23	5	12	6
CCCGTTTGCGGTCTAG	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTGAGCCAAAAT	alt_1261_fdr	23	26	37	15	35	18	38	22	30	12
TCGGGTCTTGTATTCC	alt_1261_fdr	8	20	10	6	15	8	11	5	8	9
AAGGTCCTTCCACTTA	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
CACGAGAGGTTTCTTT	alt_1261_fdr	36	54	52	38	63	44	47	40	72	35
ACCGGTTAATTGTCGC	alt_1261_fdr	3	34	8	8	36	7	41	7	32	4
CAAGCCGCCTGCCCCC	alt_1261_fdr	11	15	17	9	19	7	14	11	22	4
AAGCGATTGTTATTGG	alt_1261_fdr	22	36	24	39	46	19	41	23	38	21
GTTCCGTTCCATTACT	alt_1261_fdr	22	37	27	32	33	32	44	21	39	17
TTACGGAGTATGCAAT	alt_1261_fdr	6	8	4	1	8	6	4	9	7	4
GTTATTTTCTAGATAG	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
GTGATATAATCACGCA	alt_1261_fdr	11	8	12	4	23	10	15	11	13	17
GTGGGATGTGTGACTG	alt_1261_fdr	22	30	24	17	40	13	26	6	43	13
TATTTTATGCGTCTCT	alt_1261_fdr	61	102	64	67	97	65	90	50	99	45
TCATCTTGTCTAACTC	alt_1261_fdr	43	57	48	35	52	42	73	40	46	30
CTCTTACTCGTTATAG	alt_1261_fdr	101	148	99	90	138	88	142	85	145	50
GCACTTCTGTACTTTG	alt_1261_fdr	1	5	2	0	2	6	5	2	5	0
CTTGTCAATCGGGCCC	alt_1261_fdr	25	34	34	33	33	24	28	32	47	26
GCGATTCTTTACTTCG	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
ACTTACGGGTTACGTT	alt_1261_fdr	53	55	59	43	78	41	69	41	65	46
AACTGATCTGTTTCCT	alt_1261_fdr	8	12	6	7	10	8	8	10	11	11
CAATGCCGCGGATAAA	alt_1261_fdr	27	53	54	32	65	17	61	36	72	22
CCATTGGCTGAACGCT	alt_1261_fdr	2	4	7	6	3	2	9	3	6	4
TTAAATTTAGGTTGGT	alt_1261_fdr	26	34	28	11	31	37	53	12	39	18
ACGACCCGACATGGTA	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGCTAACTCGTCT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
ATAGATCCATGCCGGG	alt_1261_fdr	12	21	8	11	15	8	14	6	13	12
CATAGCTCGTGGATAC	alt_1261_fdr	14	14	8	7	13	14	11	8	15	16
CAGTTGTTTTATCAAG	alt_1261_fdr	13	18	17	11	11	15	15	14	30	16
GACATCAAAATTAAAC	alt_1261_fdr	9	14	6	12	15	14	13	6	13	4
CTGTATTCTACTAGCT	alt_1261_fdr	5	6	3	7	13	5	5	2	12	8
ACAGCATCATGTGAGT	alt_1261_fdr	41	40	35	30	52	37	37	43	44	21
TTGTGTTGGTGTGGTG	alt_1261_fdr	48	71	52	59	77	48	85	45	76	52
TCTCAAAGGTCTGTTA	alt_1261_fdr	21	39	26	29	43	26	44	24	41	21
CACGACTATTCAGTAC	alt_1261_fdr	12	25	26	17	38	12	36	14	27	11
GGTAGATCCGTACATT	alt_1261_fdr	8	11	18	14	18	9	19	15	13	3
GCTCGTCTCTCCGTCT	alt_1261_fdr	4	11	2	4	5	0	7	1	4	5
TATTTATGCGGAGTTA	alt_1261_fdr	23	33	31	31	32	27	41	16	46	19
AGAACTTTTCCTACTA	alt_1261_fdr	21	10	12	9	21	10	23	4	19	10
CGGTGTACACACTGTG	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
AGGACCCTAAGACCAA	alt_1261_fdr	46	50	49	39	57	39	65	26	63	24
TGCTGTAACTTCATGA	alt_1261_fdr	28	48	37	34	46	32	42	29	48	28
CCACATTAACTATAAA	alt_1261_fdr	6	17	10	3	24	5	19	11	14	9
CAAGTCGCACTCCAAC	alt_1261_fdr	2	6	7	4	4	3	10	2	4	2
ACGAAATGGATTTGTA	alt_1261_fdr	38	51	30	39	37	39	54	22	49	18
GCCCCGATCGAACTTA	alt_1261_fdr	8	11	19	6	14	6	14	13	33	7
CTCAGGTTTCACTTTT	alt_1261_fdr	17	19	10	13	19	15	16	8	17	11
CAGTGTCTTGCTAGAT	alt_1261_fdr	20	43	22	19	55	25	41	19	44	27
TGTCTGCACTTTCTTC	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTACGCAATCAGC	alt_1261_fdr	28	29	32	24	41	20	39	17	40	27
TCTTAATAAGTGTTGT	alt_1261_fdr	17	20	13	16	16	4	30	14	33	10
TAGTTCCCACAGTTTA	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGTCATTTTCTCG	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TGATTGACTACCCTTA	alt_1261_fdr	16	36	26	25	27	34	42	38	36	33
AGGACCGTTGCACGAG	alt_1261_fdr	46	53	48	38	69	28	42	36	63	50
CACATTGTCACCACCT	alt_1261_fdr	20	24	14	22	33	26	23	11	21	8
GGTCAAAGTCTGTCTT	alt_1261_fdr	20	42	29	18	37	20	45	20	37	25
TTTATACGGTACCTTT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTTCATCTTTTGA	alt_1261_fdr	4	5	5	1	6	3	7	1	8	6
ATCAAAATCCGGGCCC	alt_1261_fdr	8	17	20	17	16	17	12	6	26	13
GTTTGACACTGCCATT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCATTTTACACGGCTA	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
GTACTTCGATTACTGC	alt_1261_fdr	1	0	2	2	2	1	0	2	2	1
TGATTTATTGATCTTG	alt_1261_fdr	6	3	1	3	2	2	5	2	2	5
TCTGCCTTCCAGTACT	alt_1261_fdr	152	147	154	103	155	141	177	99	192	122
TGCGACTGCCATTAAC	alt_1261_fdr	17	21	10	9	15	2	23	14	16	12
AGGAATCGGTTCCGGT	alt_1261_fdr	13	11	7	10	14	8	10	5	10	10
TTGTAGACAGCTCGGT	alt_1261_fdr	60	99	88	55	101	65	136	71	99	57
ACTGGCCCGACTGATC	alt_1261_fdr	11	13	10	6	8	11	8	8	6	8
TATGCATCTATGATTT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCATAGCGTGTTT	alt_1261_fdr	45	107	72	69	93	78	109	51	113	58
TCTCATGTAGGACCAG	alt_1261_fdr	2	2	0	1	1	1	0	1	3	0
GCCACTCGGTACCTGT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTCTTCATCACTA	alt_1261_fdr	35	33	18	19	53	17	54	31	45	30
GAAGATGGGGTATTAT	alt_1261_fdr	89	121	111	113	125	101	149	116	134	90
GTCCACTGAATGGCAC	alt_1261_fdr	9	9	8	13	21	5	13	9	10	9
CAGCATTCAGTCATTT	alt_1261_fdr	3	7	3	4	4	3	7	3	8	2
CACAAGAGTTAGCGTC	alt_1261_fdr	77	119	89	78	172	102	166	72	137	92
TTTGAGGTTTTAAGGA	alt_1261_fdr	0	2	2	0	0	3	1	1	0	0
CTATTATCCGTGTTGG	alt_1261_fdr	47	99	49	41	75	48	79	36	107	47
GATTGGATGTCGGAGG	alt_1261_fdr	8	7	8	6	8	7	11	9	17	8
AGGTTGTTACTCGCCC	alt_1261_fdr	16	23	20	12	33	15	25	20	26	16
AGTGTGGCGAAAATTA	alt_1261_fdr	63	63	63	58	90	60	73	62	71	54
GCCAGCGCCCTCCCGC	alt_1261_fdr	2	8	7	5	10	2	13	3	8	4
TGGCCGATTTCAAGAT	alt_1261_fdr	14	22	15	16	26	17	22	20	24	17
GTGGATACGGTTGTTA	alt_1261_fdr	51	88	76	64	89	64	104	56	107	64
AGTGTGGGAACCGGAG	alt_1261_fdr	52	72	62	46	72	44	71	49	66	54
GAACCGTTATTTTCCA	alt_1261_fdr	70	93	93	78	113	59	100	69	89	74
ACGCCCGGCCTGTACC	alt_1261_fdr	10	19	14	12	23	9	23	7	16	4
CTTGACCGGATTTTTG	alt_1261_fdr	11	15	8	4	18	9	16	8	23	10
GTGCTTTTCCTGCTAC	alt_1261_fdr	20	19	18	15	27	14	30	21	30	12
CGCCAATTGCGTCCCA	alt_1261_fdr	143	266	223	189	310	186	311	200	296	164
CGGACTCGCCTCGTCA	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTGGCCTATGTGA	alt_1261_fdr	84	117	89	75	149	47	125	54	130	65
GGGGGTATTTTTTAAT	alt_1261_fdr	45	57	60	39	82	50	62	46	57	46
GTCCACGACGTATTCC	alt_1261_fdr	62	93	77	70	113	55	110	59	100	57
TGCTTGATTTTCGCCG	alt_1261_fdr	2	6	7	3	10	8	11	4	13	4
TAGCTCCATGTTCCGT	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
TATATACTCTTATTCG	alt_1261_fdr	53	92	72	56	82	65	95	54	94	56
TTTGTTTGTAATGCAA	alt_1261_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGTATAGCTGCTT	alt_1261_fdr	1	2	4	4	5	2	4	5	5	3
GGTAAACTCCCATTGG	alt_1261_fdr	3	2	3	1	2	1	6	1	4	0
CATTTTTTATTATGTA	alt_1261_fdr	19	28	21	11	28	11	24	17	30	8
CGCATTTCATTGTGGT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
AAGCCCCGCGGCCCCC	ref_6077_new	50	39	41	26	28	34	36	28	49	27
GTCTACCATGTCAACA	alt_6077_new	8	24	9	10	27	6	28	3	30	10
AGTAGCCCGTTTCATT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CAAGTGTACTGTCGTT	alt_6077_new	24	34	34	33	38	25	37	27	36	20
ACCCCTGCCTTCCCCT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
TCTACTGACAATCATC	alt_6077_new	11	13	3	7	12	16	8	10	6	4
CAGGTATACGACCTAA	alt_6077_new	313	429	387	344	444	331	443	272	418	277
CAACCATATGTCGCCT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CCACATTTACAGGACA	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CCAACCATGGTTCCAG	alt_6077_new	0	0	0	0	0	0	0	0	0	0
TATTGAGGCTCCCAGA	alt_6077_new	19	20	18	19	21	18	11	20	19	13
ACGTAGTTCCAACAGT	alt_6077_new	60	55	87	78	65	57	60	80	80	56
ACAAAAATTAACTGGA	alt_6077_new	1	3	0	9	0	1	0	0	1	0
AGATAACTTGGATACC	alt_6077_new	14	31	15	20	18	19	19	15	11	14
GCTGTAGCCGCGGCGT	alt_6077_new	57	47	62	63	43	51	46	61	49	53
TTCTAACGGGCACCTC	alt_6077_new	24	25	16	26	26	27	35	27	27	25
CGTGGCACCGCGCGTT	ref_6077_new	343	326	437	387	358	355	378	344	392	322
AGATCATGGTTCCATA	alt_6077_new	9	11	10	7	14	9	14	11	9	9
CCGGTGGCAGCGAGGA	alt_6077_new	46	40	54	46	38	49	45	54	39	42
GAGATAGTTTCGCACA	ref_6077_new	167	164	186	152	175	120	159	119	192	137
TCGTCAGGTCGGGACC	alt_6077_new	12	22	28	14	12	26	20	32	18	18
GTAAACCTTTGACGAG	alt_6077_new	69	65	93	72	66	67	74	54	72	67
CCCGATGTCTCCCGCC	alt_6077_new	0	0	0	0	0	0	0	0	0	0
TCTCGTGGATCATCCG	alt_6077_new	0	0	0	0	0	0	0	0	0	0
AATGTGATTGAAAAAC	alt_6077_new	15	31	31	28	29	25	27	17	33	15
TATTGCTCGGTATCGT	alt_6077_new	43	34	51	56	51	42	52	49	47	34
TGGTCAGGATCTAGTG	alt_6077_new	32	40	46	46	50	38	48	50	47	43
TTGGGATGGTAGCTTG	ref_6077_new	27	18	33	21	17	32	25	25	21	22
ACGATATCATCCCACG	ref_6077_new	0	0	0	0	0	0	0	0	0	0
AACATGTTTATGCATC	alt_6077_new	10	13	13	12	8	12	12	12	14	6
GCTCTACATTAGTGTA	alt_6077_new	20	17	34	22	20	29	29	29	15	15
TCGCGCGGGTTGTATC	alt_6077_new	15	9	14	16	13	9	21	13	16	7
GAGCTTTAGGCTCTCG	alt_6077_new	43	40	51	37	52	33	47	43	35	29
GATCTTTTGTCTCCAG	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CCCTTTCGAGTACCAA	alt_6077_new	3	11	3	4	5	3	12	9	5	4
CGCCAGTATGGATACA	alt_6077_new	10	14	10	18	5	9	13	6	13	7
CGGAGATGGTGTGAGG	alt_6077_new	0	0	1	1	0	0	1	0	0	0
TTAGCCCCCGGTTTCA	alt_6077_new	20	18	7	13	16	11	17	11	7	8
TCGGGTTTGTATACCC	alt_6077_new	22	14	17	33	14	20	25	17	21	16
TAGTTTCTATCATTAT	alt_6077_new	12	12	11	9	4	8	12	1	11	10
TGTTCCACCTCCCTTT	alt_6077_new	32	33	48	29	35	15	31	30	51	28
GGATGGGCCCTTCAAT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
ATTTGCAGCAAGCGCT	alt_6077_new	112	111	147	107	107	103	95	108	117	123
TGTTCGTTCCTCTGGT	alt_6077_new	9	6	19	10	8	7	8	11	14	8
TTTTGGGGTGATTACT	alt_6077_new	34	37	47	35	35	47	27	29	55	39
TTACAACATATGGAGG	alt_6077_new	1	0	0	0	1	1	0	0	1	1
ATATTACCGACTTCTT	alt_6077_new	29	47	41	57	43	48	32	39	45	42
TATTGTCCCAGTTCGC	alt_6077_new	13	16	16	26	15	11	20	7	13	9
GCATATCGTGTCTTTA	alt_6077_new	14	14	19	11	14	24	13	18	20	8
AGTCCCCACCTTCGTA	alt_6077_new	8	12	7	9	13	5	11	12	10	8
CACAGATTGTTGCGGA	alt_6077_new	43	61	63	55	57	55	67	51	71	60
GATATATTGTTATGGT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
TCGCTCTTATACCACA	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CATAGGTGGGAAACCT	alt_6077_new	17	24	8	15	23	20	17	8	13	21
GGGTCATGTTGTTCCC	alt_6077_new	5	8	15	5	7	10	7	12	20	10
GTTACTAATTGACAGC	alt_6077_new	59	59	70	73	28	54	52	52	51	51
TCTTAAAACACGTATA	alt_6077_new	54	68	68	63	57	46	62	47	49	39
ACTCCTACAATCTGGA	alt_6077_new	20	29	22	26	31	20	37	17	23	16
ACCCCTATCGCTTTTT	alt_6077_new	8	27	10	10	21	9	40	7	20	6
ACATCGGAACTCGTCT	alt_6077_new	20	17	17	19	17	10	15	16	12	12
CCACTCGCGACTATTT	alt_6077_new	46	55	66	64	59	43	61	46	81	50
ATAGTCGTACGACTAA	alt_6077_new	39	42	38	48	36	51	33	32	37	29
TACCAGCATCCGCTCC	alt_6077_new	0	0	0	0	0	0	0	0	0	0
TGTTTGACTTCGTGCT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
AAGTGTGGGATGTCTT	alt_6077_new	13	19	13	14	10	17	10	15	10	14
GGGGTTGTACCGCAAA	alt_6077_new	50	59	66	50	53	62	69	52	55	48
TTAAGCCTGTTCGCAA	ref_6077_new	39	35	42	44	46	24	34	25	37	34
CCGCTTCTTCGACTAC	alt_6077_new	0	0	0	0	0	0	0	0	0	0
GTCCTTGCTATTGTGT	alt_6077_new	51	43	43	63	47	47	53	46	37	40
CAAATCTCTTAGTTTT	alt_6077_new	22	26	35	32	27	28	40	34	29	25
TCATGTATAGGGGTCA	alt_6077_new	40	52	46	46	32	34	47	38	47	42
ACCGTGTTCTAAATTG	ref_6077_new	346	360	393	339	391	329	389	263	409	298
TGGTACCCGTGGCCGT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
TTTCGACTCCCGTGCG	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CATGTTTGGACATCTG	alt_6077_new	37	32	41	32	35	42	53	34	34	39
AGTCCACTCGTCAGGA	alt_6077_new	16	38	29	21	21	21	22	34	32	14
TACCGAGTGCTTCAGT	alt_6077_new	32	30	31	35	22	30	48	27	36	39
GGGGTGGTGAGCGATG	alt_6077_new	37	39	74	58	27	47	46	49	45	41
CTACCGGGTAGCGGCT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CTCGCGACTAAGACGC	alt_6077_new	43	65	64	57	59	52	73	54	89	54
TCTAGAAGGCTTCTGC	alt_6077_new	0	0	0	0	0	0	0	0	0	0
TATCCCGCCTCCATGA	alt_6077_new	85	72	81	78	67	71	89	67	84	71
TGTCATGGTTCGTCTA	ref_6077_new	47	53	52	59	52	60	54	52	53	38
TGCGGTCGTGACCGGT	alt_6077_new	137	118	153	143	137	113	100	144	123	104
AGAGCGTCTTTAGCGG	alt_6077_new	0	0	0	0	0	0	0	0	0	0
GACGATTTTCTCTAAA	alt_6077_new	100	118	113	91	93	101	109	106	104	88
AGAAGTCTGGTATCGT	alt_6077_new	0	0	0	0	0	0	0	0	0	0
GTCTCCCTGGAGTCTC	alt_6077_new	0	0	0	0	0	0	0	0	0	0
GCTCTACAAACGGACT	alt_6077_new	11	24	28	15	20	21	27	19	20	22
AGGTGTTTACGATCCC	alt_6077_new	24	55	34	38	51	29	77	46	66	22
TGCAGCTGGCCCAGAA	alt_6077_new	22	37	23	23	23	17	26	35	24	22
ACAGTAGGTTTACGGA	ref_6077_new	36	43	40	43	30	28	35	33	37	35
CCTCTTAACTGTGTGA	alt_6077_new	10	8	17	11	21	8	13	8	17	6
AAGAACCATGTAATTA	alt_6077_new	0	0	0	0	0	0	0	0	0	0
AGTTCATTTGCAAAGT	alt_6077_new	39	50	33	25	38	26	31	31	39	35
CCCCGAGGGTTCGCGC	alt_6077_new	14	19	21	26	20	14	22	15	31	15
CTTGTATAAGTAGGGG	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CACGACCTATGTTCCT	alt_6077_new	1	1	6	1	0	2	3	3	2	2
CTTGCTCCACCTACGA	alt_6077_new	2	4	3	3	5	1	2	4	4	0
TGCAGTTAAGAGCCTG	alt_6077_new	15	15	13	12	9	5	8	11	11	10
CACCAGTACGCCTACC	alt_6077_new	0	0	0	0	0	0	0	0	0	0
ATATTTGTTCGGCTAA	alt_6077_new	61	43	72	65	54	66	57	63	73	55
GGCCTGACGCTTACCC	alt_6077_new	42	75	52	67	72	44	79	46	82	38
TCCCTCCCCGTTGAGC	alt_6077_new	0	0	0	0	0	0	0	0	0	0
CTATGCTGGTTGGTCC	alt_6077_new	34	32	66	54	40	32	33	39	54	35
CACTGTCTTTCAATTA	alt_6077_new	119	172	172	168	180	130	196	142	183	119
CCGGGTTAATCTGGTA	alt_6077_new	15	15	10	15	15	9	27	16	18	7
CCGGAATTACTGCCCA	alt_6077_new	12	19	30	12	18	14	14	19	16	12
AGTTATCCTAATCACG	alt_6077_new	115	119	107	98	75	90	122	70	112	97
TACATACCGTGGAGTT	alt_6077_new	11	19	17	13	22	11	19	24	18	8
TTGTTCATAGATTATT	ref_110_RC	68	114	61	39	96	56	98	49	108	42
TTGTTCTGCGACTAGG	ref_110_RC	0	0	0	0	0	0	0	0	0	0
ACGCCCCTGCACACTG	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CTATTTACATCCAGTG	ref_110_RC	8	15	10	4	18	7	17	10	32	7
CTGATTTCTGGTGCCT	ref_110_RC	7	8	7	4	9	5	14	4	7	1
TACTATCTTCTAGAAG	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GCGATGCCAATGTTAC	ref_110_RC	3	18	8	8	11	6	16	5	15	5
CCATTCTCAGCTTAAT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCCATTCTGCGG	ref_110_RC	21	45	21	29	50	24	56	34	50	21
TTGTCCGTATCGGCTA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GGTTTGCGAATTCCCC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CGGTGAATTTGTTAAA	ref_110_RC	150	333	211	162	362	151	407	146	389	160
CATGGACAGCACACTA	alt_110_RC	29	45	41	25	50	37	46	21	56	30
GTCTTGCATACAGCTA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GAATGCGTCAAATGTA	ref_110_RC	66	159	79	64	149	64	161	68	168	64
AGCTCTAATTTTTCCA	ref_110_RC	27	75	41	35	70	32	64	25	81	15
TTCTTCTTGACGTGCT	ref_110_RC	52	103	65	51	108	58	131	54	119	46
AGTTTGTTTGCGGCAT	ref_110_RC	23	37	26	23	41	25	46	24	40	15
GCGGTGACCGCTCCAG	ref_110_RC	40	161	44	37	189	36	181	52	185	30
AGGATGTGTCGTTATA	ref_110_RC	5	7	4	4	13	6	6	9	9	5
GGCCAGACTGATCTAA	ref_110_RC	3	11	5	5	11	3	9	4	8	2
AAAGGGCCCCTATGTT	ref_110_RC	0	0	1	1	0	0	0	1	2	0
TTGGGGGGTGTCGAAA	ref_110_RC	22	39	26	26	45	18	46	13	42	15
GGCCGTTGAGGGCGCA	ref_110_RC	8	24	19	16	21	12	15	8	20	8
TTTCGATGGTCTGGTT	ref_110_RC	33	78	42	39	81	39	66	19	89	33
TCCTACCGTATCGGAA	ref_110_RC	26	64	43	34	83	42	71	31	81	28
GCCACACTTTCAATCA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GTGCGCTACTTACGAG	ref_110_RC	6	19	10	3	24	2	21	8	30	8
TTTTCTCCAGCTCTCC	ref_110_RC	38	54	40	30	56	30	59	37	76	38
TTCTGCTATTGTTAGT	ref_110_RC	13	12	18	23	36	14	24	11	25	19
CCCGTTAACCTCGTAC	ref_110_RC	12	51	9	17	90	11	71	15	70	11
AGCAAGCGTATGATAA	ref_110_RC	6	1	10	3	2	1	6	1	2	2
TACGCATCCTTCAGGT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GCTTAGTTTGACGCGG	ref_110_RC	6	33	17	8	19	9	19	17	33	7
GTCAACTTTTTACAAT	ref_110_RC	125	283	142	115	320	117	302	119	304	117
ACCAACACCGTACGAC	ref_110_RC	6	10	12	6	17	5	8	7	22	4
TTACGCATTCAGGGTC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GAATGTTTTATCGCGC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CCGGAGTCTAATTCTT	ref_110_RC	1	10	5	2	4	6	4	3	3	3
CCGTCTCGAGCCGTAT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
ACGGTTATACTTTATT	ref_110_RC	7	14	14	2	19	6	12	5	14	5
CTTCGATCTTCATCGG	ref_110_RC	22	49	22	27	39	18	46	17	39	10
GGGTGTTCGAGTCTGT	ref_110_RC	64	139	98	68	132	54	148	72	158	74
TTCCGGGAGTTGGCCG	ref_110_RC	22	33	27	18	27	15	38	15	48	20
GGTTATATCTTCTTCC	ref_110_RC	31	43	28	19	41	24	50	36	38	32
CCTATGGTAACTCTCA	ref_110_RC	6	7	4	1	7	7	8	0	1	2
CGTAACTGGTAATAGG	ref_110_RC	11	12	21	13	20	9	15	12	21	2
GAGAGCTTTCTACGAA	ref_110_RC	1	0	0	0	0	0	2	1	0	0
GAATTATTTTCATCTA	ref_110_RC	25	39	20	22	46	18	31	26	66	17
TTCTTACGCAGTCACG	ref_110_RC	122	269	136	130	253	109	251	134	283	97
TAACCCTTTCAGTTTG	ref_110_RC	21	44	48	29	67	27	61	40	54	29
GCGTCTTCCGCTATAT	ref_110_RC	25	67	28	20	67	17	60	25	47	25
ATTAATGAGCACATAC	ref_110_RC	17	29	12	19	19	19	22	14	24	11
GGTCCTGGACTGAGAT	ref_110_RC	1	4	3	0	2	1	2	3	1	1
CCGGGGCGGTTTTTCC	ref_110_RC	2	6	8	6	8	3	15	4	6	4
TAGCCTCGCCTTGAAG	ref_110_RC	24	43	26	24	51	22	47	24	64	22
GGAGGGTCTACCTATC	ref_110_RC	20	20	24	24	31	15	39	23	38	15
TTCAGGCATATATTTC	ref_110_RC	77	133	80	67	134	70	154	66	146	53
TGTAATCGCCCGGGCC	ref_110_RC	39	56	38	37	52	31	57	26	52	28
TTGTCTTTATTAGGAC	ref_110_RC	4	14	3	8	12	6	7	6	13	6
TTACGTCATCGTTCTA	alt_110_RC	22	60	35	34	36	16	49	22	51	30
CGCTGTGTCATCACTT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GTGACGTCTAAAGGAT	ref_110_RC	19	12	8	11	19	11	32	5	24	8
AGGTAGGCTTCTAATA	ref_110_RC	5	6	7	1	10	5	7	0	4	2
TCTTAGGGATCTGAGC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
TTGCATTTAGGATTTT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GTACATCGGTCGGATC	ref_110_RC	10	11	13	4	9	12	13	4	20	6
TATCCTTACTGAGAGA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
TCAAACTCCCTTTTTT	ref_110_RC	34	89	27	35	79	31	102	21	81	25
CATCATTGCCAATGCT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
TCGCCCGCAAACGGGA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
TCGTTCCAGTCAAGGT	ref_110_RC	5	5	6	0	10	4	5	3	5	4
GCGAATTATTATATTG	ref_110_RC	53	98	64	51	95	50	128	37	115	46
TTCCGAACTTACCCTC	ref_110_RC	11	63	23	13	53	3	56	12	77	13
GCACACAGACTAAAGC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CTCGGTATGATCGTGA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGAACAATGCTC	ref_110_RC	14	34	13	10	18	11	24	7	20	12
CTATCGCAGGGCTGAT	ref_110_RC	1	2	1	1	2	0	3	0	1	0
CAGATGCGCCGATAAT	ref_110_RC	36	76	34	40	71	26	88	38	71	44
ACGGTCATTCAACTCC	ref_110_RC	5	2	1	3	2	0	2	1	2	3
ATTTCCATTCCCGTTG	ref_110_RC	18	45	16	16	27	16	31	9	49	12
GGGTGTGAGTAGTTTG	ref_110_RC	13	21	10	11	26	11	20	8	23	10
CCTATGTGGTCTAAGT	ref_110_RC	29	72	50	33	90	30	98	41	110	35
GTGAGATACGTCGTGC	ref_110_RC	6	4	1	0	4	3	4	1	2	0
GTCTATGTTACTGGAG	alt_110_RC	15	47	22	27	40	22	48	9	44	16
TCCTTGTTGTGTCTCC	ref_110_RC	3	9	3	5	8	3	10	3	4	1
ATGAGTTTTAGGATCA	ref_110_RC	23	16	10	10	24	7	18	10	20	7
GGTTACCCGGGCAACC	ref_110_RC	12	9	4	8	12	6	17	7	9	6
GCGGTGCCCGCTCCAG	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CAACGATATTAATGCT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CACAAGGCGTCTTCGA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CAGGTCATAAACGACG	alt_110_RC	43	76	45	28	77	42	85	37	69	35
GCTCCCGGGGGACTAT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCGAAATGGCGT	ref_110_RC	4	10	6	4	6	12	8	6	12	4
TTGCATGCACACATGT	ref_110_RC	4	9	4	5	11	3	10	4	6	2
GTCCCAGCGCGCAGAC	ref_110_RC	15	38	11	19	42	13	38	23	26	20
AAAGATCAGATGACTG	ref_110_RC	5	11	9	4	12	5	15	4	9	4
CTTATATTTGACGGTC	ref_110_RC	26	57	42	28	62	34	67	40	78	39
GATCGGGACGGGAGTG	ref_110_RC	23	53	37	23	36	25	62	19	61	32
ATTTGCAGCAACCGTC	ref_110_RC	39	64	61	32	71	51	81	35	91	48
CAAGTTTCGCACTGAG	ref_110_RC	12	20	9	16	19	6	21	3	19	8
CCCGGCCCGCGGCACG	ref_110_RC	1	11	0	3	8	1	16	0	18	0
CTTATAGATTATGGTA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
AAATATCGGTAGTGCT	ref_110_RC	16	31	21	8	29	10	15	10	50	11
TTCCGTCCGTGAAGAG	ref_110_RC	33	67	51	30	65	42	78	26	72	34
CATTTCCAAGTGCCTG	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GACGAGCTCGTAATAA	ref_110_RC	18	27	20	22	33	16	38	5	31	17
TGAGCCCCTGCTGTCC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GTACCACCCTCCCCCG	ref_110_RC	0	0	0	0	0	0	0	0	0	0
TAGTTCAGATACCTCT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTTAAGGACGTG	ref_110_RC	4	14	4	6	8	3	15	2	8	1
TTCTTAAGCACCGGGT	ref_110_RC	33	42	30	21	33	26	56	22	46	18
ACCACGCTCATATTAC	ref_110_RC	22	56	48	23	60	19	63	24	52	15
TTAGTGGGGAGCGATG	ref_110_RC	0	0	0	0	0	0	0	0	0	0
GGACGTGCTGTCCTCC	ref_110_RC	8	17	9	12	19	3	23	11	25	5
GAGTCACGGGGGTAAA	ref_110_RC	0	6	3	1	7	4	6	4	9	0
TCCAAACCCTTCGCCA	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CGGTCTCCTTTTTCGT	ref_110_RC	0	2	7	2	0	2	2	1	3	1
CCTACGGCGTCAGTTA	ref_110_RC	0	1	1	2	3	2	3	0	3	1
AACGGGAGTTTGGTGT	ref_110_RC	2	7	1	7	9	0	11	1	8	2
GTATATACCAGGTAAG	ref_110_RC	6	17	7	10	14	7	27	13	13	2
AAGGCTTTTAGGGAAC	ref_110_RC	10	11	5	17	12	9	17	8	28	13
GCACGGACTGCTTGGG	ref_110_RC	12	26	18	18	34	10	35	9	29	9
TCCGTTCCGACTACTG	ref_110_RC	4	10	6	4	13	5	3	1	9	3
CTGTCTAGTTAATGGC	ref_110_RC	6	13	13	10	20	11	18	8	18	10
ACTTACATCTATGCTT	ref_110_RC	3	8	4	3	6	2	10	3	10	1
CTCAGAGTTGGGATAT	ref_110_RC	42	140	61	57	117	35	123	48	151	58
CATTGCAGGCTCGAGC	ref_110_RC	21	35	30	19	49	19	51	18	45	17
TAATGCCTAGGGTAAC	ref_110_RC	19	43	25	29	50	18	41	14	50	22
CGTGTAATCTCAGATT	ref_110_RC	30	39	35	20	44	23	43	39	53	12
CTAGAGGTGCCGTCGC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
AAGTGCACTGCTAGTA	ref_110_RC	2	5	4	4	4	0	2	0	2	0
TGACTCCATGTAAATT	ref_110_RC	0	0	0	0	0	0	0	0	0	0
CAGTATGGAATTTTCT	ref_110_RC	5	10	9	8	21	7	10	6	11	6
TACTCATGTGTCAACC	ref_110_RC	0	0	0	0	0	0	0	0	0	0
TGTACTGTAAACTTTT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTTCGTGGTGATC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCGAGGTGACATC	alt_5553_reverse	53	44	37	46	33	41	34	37	38	32
ATGATCATGAATACCG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTTGTAACCCGGG	alt_5553_reverse	253	95	287	274	141	230	152	246	125	209
TTTCTTTTAGCTCCCA	alt_5553_reverse	52	17	51	47	23	36	28	31	18	39
CTTGCGCATGTTTCCT	alt_5553_reverse	75	41	113	67	33	103	49	78	43	63
CCAGTACGTCTCTCCA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCATTGGCCACTT	alt_5553_reverse	15	15	21	21	15	27	16	20	15	14
TAGGCAGGAATCCAGC	alt_5553_reverse	1	0	1	0	0	0	0	0	0	0
GGTGTATACCTATTAG	alt_5553_reverse	188	108	216	189	105	173	106	194	115	155
CCGTTTTCCTGAGCAT	alt_5553_reverse	15	6	24	29	7	10	18	15	4	23
TCGTGGGATACGAAAT	ref_5553_reverse	228	97	316	219	128	209	166	186	137	218
TAGATCTTGTTTCAGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
AGGATATTTACCGCGC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CATTCGCTAGGAGTAG	alt_5553_reverse	15	11	19	20	9	15	10	22	12	19
CAGTTCCCTGATGCAT	alt_5553_reverse	38	19	61	35	23	41	16	36	13	33
TAGGGGTCATGTACGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCGAGATGGTTGC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TAAAGCCCGGATTTGC	ref_5553_reverse	925	484	1152	977	536	928	536	916	545	806
GGGTGCGGAGGGTCTA	alt_5553_reverse	2	4	4	2	0	5	2	3	1	7
CGAAGTCCATGGTATT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CAAGTAGAGTCTAATG	alt_5553_reverse	28	16	25	26	16	23	14	23	16	19
ATGAATACCATTTGGT	alt_5553_reverse	5	1	2	4	4	1	1	4	3	7
TTTAAACGGGGCTGAT	alt_5553_reverse	129	54	140	131	72	101	90	142	66	90
TATCAGTTGCTCACTC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTAATGGTAGCACTCG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTTGACTATTCAA	alt_5553_reverse	15	6	23	15	6	5	5	17	9	25
CCTCTTTTGAGTGGAG	alt_5553_reverse	319	168	376	296	139	275	184	237	204	249
TTTCCTATCTCCTCGC	ref_5553_reverse	127	52	137	110	81	142	61	127	61	120
TGGTGCTCAGCATACC	alt_5553_reverse	36	24	65	69	34	65	26	51	20	37
GGTCGTGTCACCCCTT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCGCGTGTGTGTT	alt_5553_reverse	241	159	311	233	182	250	188	247	155	226
TGGTGTATATTATCCT	alt_5553_reverse	22	8	21	16	4	16	16	19	16	21
CCTGGTAAAATCTTTG	alt_5553_reverse	14	2	17	21	12	11	10	17	15	12
GATGACCCCCGCCGTG	alt_5553_reverse	7	13	10	10	7	10	1	10	3	9
CGCACAGTGGTCCACG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTCCATGTTGTGTTAG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGGTCCATTAACG	alt_5553_reverse	74	91	128	96	65	96	84	97	89	82
CACAGCATTCCTATAT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CTCACCTATACACGGG	alt_5553_reverse	145	102	179	172	99	150	105	137	116	127
ACGTAGAGTGATCTTC	alt_5553_reverse	84	47	98	84	38	71	36	75	36	88
CTCAAGCTTGTCAAAG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTAATACCGCCTTGGT	alt_5553_reverse	5	3	10	4	8	9	1	3	8	10
CTTCCCCTACTCGGAC	alt_5553_reverse	15	8	20	31	20	24	16	22	15	25
GAAGTTAGCCTCAATA	alt_5553_reverse	221	97	261	215	85	209	116	187	120	161
GTAGTCATTCGGGCCT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTATATTGCGTA	alt_5553_reverse	76	42	95	88	47	79	47	81	46	72
TCTGAGTTGAGCTTTC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TAAAGCCAGGATTTGC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTTATGCCCGTCATAT	alt_5553_reverse	32	17	32	37	12	22	12	31	18	35
GCGATTCTGAGTAGCG	alt_5553_reverse	18	13	25	20	11	15	12	20	10	23
ACTTATAGCATATTGC	alt_5553_reverse	82	30	92	69	44	87	43	61	37	69
TACGGCGTCTCTCTGC	alt_5553_reverse	13	5	11	12	7	14	8	8	6	10
CGTTTGAGTAGTTTTC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGCCGTATAGTAT	alt_5553_reverse	75	38	75	73	30	68	38	68	33	61
TGACTTTTTATGATTA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTGGCTTGTTTCT	alt_5553_reverse	5	6	5	12	4	7	4	7	3	7
CGCAGGCCTGGGCAGT	alt_5553_reverse	1	2	0	0	0	0	0	0	1	0
TTGATCATGAATACCG	alt_5553_reverse	388	198	461	352	210	340	217	374	180	361
ATACTAGGTGCTTCCA	alt_5553_reverse	58	24	64	50	33	48	30	60	25	52
CCCCGCCTTGGGTTAT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CACCCCGGGACCGGGT	ref_5553_reverse	82	62	85	78	89	67	55	51	58	45
TGGAACCTCTGTTATG	alt_5553_reverse	0	0	0	0	0	1	0	0	0	1
CCTTCTGTCGCCGGCA	alt_5553_reverse	2	1	6	2	2	7	3	8	4	4
TGCTCTAATAGATTGG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCACAGCTTAGGG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCGGACAAGCTGC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
AACCTTGTCAAACGTG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCACCTTGCGACT	alt_5553_reverse	16	4	26	23	15	18	11	14	19	8
GATACATTACCATTGT	alt_5553_reverse	78	45	76	79	53	55	64	77	71	72
GTGAGAATCTCGGGCT	alt_5553_reverse	35	13	49	48	24	45	23	48	28	42
TGATTGCATGAATATA	alt_5553_reverse	87	49	102	92	51	85	57	81	55	85
GTAGCATTCATAGTTG	alt_5553_reverse	34	19	33	46	19	31	22	32	19	25
TCACCACGATGAGCAA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTTTGTAGCTTGA	alt_5553_reverse	67	135	96	92	142	72	140	77	136	67
TTATATTGAGTGATTA	alt_5553_reverse	106	57	115	109	73	127	63	112	43	123
GAGTTTTGTTTGGTAA	alt_5553_reverse	107	55	136	109	58	124	62	93	69	96
CAGTCGCATTTCGAAA	alt_5553_reverse	68	54	90	66	65	67	72	74	67	71
ATCATCCGTAGACAGA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TAGACCTCAACCCAGA	alt_5553_reverse	27	5	31	18	12	21	17	24	10	19
ATTGTCGGAGCGCATT	alt_5553_reverse	52	32	61	58	24	42	35	49	36	58
TACAGGACACCCAATG	alt_5553_reverse	41	24	42	36	14	29	24	23	11	28
CGTTTCATAGAAGATA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CGTTACAACTTTCTAA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATATGACGCATTAAGT	alt_5553_reverse	502	284	616	510	265	538	274	474	294	473
GTATTAGCTAGTGTAA	alt_5553_reverse	11	11	9	8	10	5	13	9	9	2
GGAAATCGCGATTCTA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTGGAGACTCTGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TCCATTGCAACTACTC	alt_5553_reverse	67	30	60	47	31	44	24	53	43	46
AACTAGCGGAATCCGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTATCGAACATCCGCG	alt_5553_reverse	42	30	53	44	18	43	31	46	21	26
CATATTTGCGATAACG	alt_5553_reverse	19	3	13	11	6	7	3	7	0	6
GCTACCACGGGACCCG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTAGAGCGTATCG	alt_5553_reverse	14	13	16	12	6	11	9	13	19	10
CTAGCCCTTGTTTGGA	alt_5553_reverse	3	3	3	2	0	0	1	0	0	1
AACTTGTGCACTGGAC	alt_5553_reverse	19	12	25	16	17	10	10	19	8	29
CTTGTGTATGCTGTGC	alt_5553_reverse	43	31	66	51	26	49	22	40	16	41
CCGGTGGGTGTGATGA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGCAATAAGGATG	alt_5553_reverse	43	22	39	34	20	38	18	38	33	47
TTCCAACCTGGGTCAA	alt_5553_reverse	53	45	64	65	30	45	33	52	36	44
ACATCTTCCTAAGACA	alt_5553_reverse	63	48	97	89	50	72	26	75	37	64
GGGCTATACGAGATTA	alt_5553_reverse	464	207	530	456	226	456	226	397	206	403
GCTCTCCCCGTACTGA	alt_5553_reverse	2	9	1	0	9	1	13	3	13	1
GCCTTCCAGTTCCCAT	alt_5553_reverse	36	18	57	30	19	32	19	39	17	41
GTTTTTATGTAAGATC	alt_5553_reverse	28	6	32	19	44	22	31	22	13	25
GATCATTATGTGACGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CGATACAGGATGGCTG	alt_5553_reverse	17	16	44	25	18	26	23	31	29	15
ATGTAACCGTCCTCTG	alt_5553_reverse	57	28	73	47	21	51	23	56	25	53
GATAGGTAGAAATTTA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTATTCAGTCCCTTTC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCTCACCACGCTC	alt_5553_reverse	318	152	351	285	154	260	171	277	182	244
TCAACAACCTCGATAG	alt_5553_reverse	274	134	277	245	123	227	129	274	131	204
TGGGATTTTAATGAAG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GATCAAGACGTGTTCC	alt_5553_reverse	38	16	35	30	18	30	5	33	14	37
TACAATTCCTGTCTTA	alt_5553_reverse	111	66	145	134	78	131	64	128	73	120
GTAGGTCAAAAGAATC	alt_5553_reverse	98	69	113	102	43	72	69	75	62	79
GGTGGTACCTGTTACC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAGTCCGCATAGA	alt_5553_reverse	25	12	38	27	20	15	18	22	7	21
TCCGTCTTCCGCCTGA	alt_5553_reverse	3	3	12	11	2	5	5	9	3	5
AGTTAAGTAGATCACT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATAACGGGGATTTGAT	alt_5553_reverse	24	12	29	20	12	15	7	15	12	23
GCACCATATAGCTATG	alt_5553_reverse	18	15	27	17	7	23	16	24	8	16
TGCGCCATTGTGCTCC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCAAGTATATAAG	alt_5553_reverse	13	8	15	14	13	16	11	11	13	12
TTTTAGAGCGTTTCAA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATCACTATGATTTCTT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTACCATTGTGTCGTT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TGTCGGAAGTATCCAG	alt_5553_reverse	41	25	68	64	22	59	34	49	31	48
GTGTAGGTCTTGGGCT	alt_5553_reverse	29	16	28	21	9	29	16	23	16	21
AGTGGATAACGCTATA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TAAACTATGACGGCCT	alt_5553_reverse	15	9	12	15	4	25	12	21	19	19
GATCGGCCAGATATGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTCTTATGATTTC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
AAACTGGCAAGATGTC	alt_5553_reverse	73	28	85	63	30	59	18	67	50	71
ATATGACGCATGAAGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGTCAGATTCTAG	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTCTCACTGTGA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTGCAAAAAGACG	alt_5553_reverse	50	41	50	71	45	42	36	71	46	50
CGCCTTAGGCGGACAC	alt_5553_reverse	41	38	51	52	33	36	16	53	32	47
TCTGGGGGCTAGGTGT	alt_5553_reverse	5	0	8	3	3	4	1	5	3	2
GGTTATTGGTATCGTT	alt_5553_reverse	28	10	42	33	16	21	15	17	13	21
GTAGTAGCTACCGTAA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
AATAGCCAACGGGCAC	alt_5553_reverse	27	21	33	32	20	23	18	28	17	23
TTGCTATCTCATGGCT	alt_5553_reverse	5	3	13	12	5	18	5	11	4	10
CGTCTAACCGCAATTT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GGTATCAATTGCTACC	alt_5553_reverse	15	17	37	22	9	25	20	20	10	23
AGAGTTTAGCGTAAAC	alt_5553_reverse	5	5	18	14	6	7	5	12	6	8
GCTCCGTGGATCGCCC	alt_5553_reverse	23	10	27	25	10	23	7	17	8	16
GACAGAGCTAGAAGTG	alt_5553_reverse	17	28	29	34	12	28	10	27	16	26
AACAAGCACGCCTACA	alt_5553_reverse	136	67	169	150	90	133	67	116	69	148
TCGTGGGGAACAATTC	alt_5553_reverse	38	6	32	29	27	40	17	30	20	33
GCTCGGTCATTGGGCA	alt_5553_reverse	27	76	32	52	92	36	75	35	99	28
CAGTCGTAATCTCAGA	alt_5553_reverse	67	45	109	65	33	59	41	65	53	43
TTCGCTGCCTTACGAG	alt_5553_reverse	36	18	42	32	12	28	23	41	17	29
AAGTTGTAGTCGCTTA	alt_5553_reverse	44	12	30	15	16	27	8	20	10	32
CGCCTTCGATATATGT	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCGTTTTGTGTGC	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTTACTTCTAACA	alt_5553_reverse	0	0	0	0	0	0	0	0	0	0
GGACAATGTCGAGGAT	alt_5553_reverse	114	55	157	111	69	110	70	113	78	101
ACTTCTATTCCTCAGG	alt_5553_reverse	63	33	74	70	41	70	43	65	52	55
AGTCTTGTTTTCGCTA	alt_5553_reverse	229	124	269	241	106	230	145	222	114	212
AATTCTTTGTAGCGCT	ref_5553_reverse	102	45	130	114	51	103	71	119	72	87
GGCGCTTCCAACCGTT	alt_5553_reverse	36	28	65	63	39	52	31	56	34	44
CCCCTGGGCCCCTAGC	alt_5553_reverse	63	27	72	63	23	48	36	50	23	40
GCGGGCCCCTGAGTTT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCCCGTGTACAGC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
AACTATGCGCTAGTTA	ref_4994_reverse	239	95	265	218	121	194	104	227	123	214
GCCCTCAGCAGCAGTG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTCAATTGTGATAAAC	ref_4994_reverse	68	39	64	58	27	46	28	36	41	42
GAGTATAATAATGGCA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TACGATTCCATTTCAG	ref_4994_reverse	14	13	18	21	8	15	15	27	17	14
TGACCAGGGGTTGTTG	ref_4994_reverse	62	40	68	63	42	68	47	72	31	62
TTACCCCTACCTACAG	ref_4994_reverse	376	198	446	403	208	421	183	387	190	339
TGCCAGAGCTACTTTA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GGCTATTGACGGTGGC	ref_4994_reverse	67	44	80	86	44	73	42	83	50	63
CCACTGGTTTGTTGTA	ref_4994_reverse	39	15	23	33	14	20	21	16	19	28
AGCGCGTTTCGCTTGC	ref_4994_reverse	43	17	55	38	33	46	26	26	24	45
TCATAACGGTTAATCT	ref_4994_reverse	47	32	50	58	28	28	21	41	33	38
CTTGGCAGGCGTGACT	ref_4994_reverse	82	52	97	87	51	77	47	93	56	85
TTATTGCTTCTTTGGT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCCGGACACCGAT	ref_4994_reverse	9	8	14	10	4	9	7	16	4	9
GTATACCAAAAGTCGA	ref_4994_reverse	115	50	104	90	47	90	55	88	53	81
GACTTGCATCCGAACC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGTTCCTTTCAAT	ref_4994_reverse	20	7	14	23	10	15	5	17	9	13
TACGTCACTCAGGACA	ref_4994_reverse	51	20	57	35	36	51	37	58	31	38
GATGTCGTCTGTAGGA	ref_4994_reverse	26	7	29	20	11	21	15	17	12	21
GCGATACTTACGCTTT	ref_4994_reverse	12	31	20	16	39	20	30	31	27	11
GGCCGCCCAAGCGATG	ref_4994_reverse	262	126	318	272	131	230	131	257	118	252
ATTGACTACGACGCCG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACGGAATTAGTGAGTC	ref_4994_reverse	59	37	80	59	32	52	27	56	33	58
ATCCGAACTATCGAGT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCGTTCAGTACGC	ref_4994_reverse	29	19	54	36	16	27	37	36	37	37
GCAAGGAAAACTAAAG	ref_4994_reverse	145	95	188	150	89	150	108	166	102	131
GGTCATATCGCGCTTC	ref_4994_reverse	64	38	62	67	24	48	22	36	29	44
GGTATGTCAACATATT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GCATTTGCTCCTTCTA	ref_4994_reverse	21	13	30	26	11	24	18	29	14	21
TATACCGCAGGTCGAG	ref_4994_reverse	35	26	62	40	19	47	25	42	22	50
TGACCCCGTTTCTTAC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTAAAACCTTAAA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTTGCAGCCTCGT	ref_4994_reverse	250	129	329	308	145	268	186	267	158	255
TACGACCTGGGATGCT	ref_4994_reverse	89	69	96	94	42	85	66	76	67	66
GTAGACGTTCATTCGT	ref_4994_reverse	45	26	66	47	32	45	30	37	39	39
ATGTACTTATATGTTG	ref_4994_reverse	39	17	43	40	23	25	17	28	12	21
CCCTCGCTCTCAGGTT	ref_4994_reverse	23	13	38	28	13	26	17	32	22	27
AGGCTTTCTTTTATAG	ref_4994_reverse	705	430	966	806	429	703	411	678	426	678
TTACGAAGGGTTGGGT	ref_4994_reverse	69	40	96	88	60	86	51	89	41	75
TGATTCATTTTGCATC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCCCCCTCCCCTG	ref_4994_reverse	6	8	6	4	18	4	16	3	20	6
CTAGCTTATGGCATAA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CACTTACTAGCGGCTG	ref_4994_reverse	9	3	10	10	7	9	2	4	0	6
GAATTGAAATGAAGAG	ref_4994_reverse	44	18	49	42	27	41	15	48	21	28
TGTCTTCCCCTGCGTG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGGCTCAGGTTCA	ref_4994_reverse	10	12	12	9	6	8	1	15	9	6
TACTATAGCTGCGACC	ref_4994_reverse	64	34	80	69	38	63	65	74	37	54
CTTGTATTTTCGATTT	ref_4994_reverse	27	27	51	38	20	43	11	39	20	29
TGAATAGTAAAAACTC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GATTCCACGCAGTATT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCAAGCTATTGGT	ref_4994_reverse	46	20	65	50	26	43	21	48	25	49
CGCTCGATCCCTTTTC	ref_4994_reverse	95	66	141	132	48	126	61	94	92	79
TGCGTCTTTTGCGGCT	ref_4994_reverse	38	12	59	31	27	45	21	33	30	39
CATTGAATTCCGAGGC	ref_4994_reverse	43	28	53	52	24	36	24	27	11	36
CCGGTCTCTCAGCCCG	ref_4994_reverse	101	66	118	88	69	85	53	86	67	66
TCGGGTTGTATCGTGC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GACTACTAAAAGCAAC	ref_4994_reverse	95	35	115	135	39	92	64	94	38	91
ATGGTGAACTTGACCG	ref_4994_reverse	107	85	146	121	59	116	74	106	76	93
GGTCAATATCATTAAG	ref_4994_reverse	3	3	6	9	4	10	5	7	7	4
TCCATATGGGATGGCA	ref_4994_reverse	46	28	62	46	27	42	27	34	25	34
TACGCAACTGGATTTG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
AGGTACGGCTCGTGCA	ref_4994_reverse	91	57	106	104	56	69	43	100	49	92
CATAGTAAAGAGAGTA	ref_4994_reverse	19	15	36	37	18	40	15	28	19	24
CCTATTTTATGTAGTT	ref_4994_reverse	299	242	440	350	272	321	218	309	252	247
CGGCATGCCGTTGCTA	ref_4994_reverse	579	246	711	661	252	529	243	593	252	548
ACCCAGTACGGAGCGT	ref_4994_reverse	102	59	149	97	69	105	77	103	78	98
ATCGTTCTTCCCTCCG	ref_4994_reverse	111	67	168	140	73	104	78	125	56	90
TCGTCCTGGCTCGACA	ref_4994_reverse	164	83	206	178	86	153	105	139	106	152
GAATATACCATAAAAT	ref_4994_reverse	28	12	23	34	13	25	15	21	11	20
CAGTCGTACATGGCTT	ref_4994_reverse	33	53	41	27	48	32	41	25	62	20
ATTTCTATGTTGTCTT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCTTCCACTGATC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
AACGTGGCCGGACGCC	ref_4994_reverse	230	98	280	243	116	225	111	234	120	227
GGATTCTCCAGGCAAG	ref_4994_reverse	68	18	97	62	26	71	32	59	36	56
TCGCATCGACATTGCC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CTAGATTCTAGTGGGC	ref_4994_reverse	128	73	144	100	93	126	80	111	66	99
TGTTTGCTCTTTGTGC	ref_4994_reverse	57	16	63	47	28	52	26	61	25	44
TGTCGAACCTTGCTCC	ref_4994_reverse	28	16	34	35	15	32	15	15	21	26
CCAATCGGTCAACGGT	ref_4994_reverse	0	2	3	1	1	2	3	4	2	2
TAGTTACATCCCTTTT	ref_4994_reverse	36	16	34	23	18	27	9	22	13	16
GGCAAGATCCTTAACC	ref_4994_reverse	47	25	71	55	44	55	33	45	33	62
GAATCGGTGACATTTT	alt_4994_reverse	68	47	81	60	44	84	41	56	38	59
CACAATTCTATTACAG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCTAGTTCAACGGCAA	ref_4994_reverse	167	118	236	194	124	176	103	181	138	145
CAATTTTACGGGGCTC	ref_4994_reverse	8	11	23	10	12	11	9	21	8	22
CCTGTGGGGAGTTGGG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ATCATTGATGAGTTGT	ref_4994_reverse	9	11	3	7	2	7	2	10	2	11
GTGTTATTTTTATTTG	ref_4994_reverse	0	0	0	0	0	0	1	0	0	0
AGAGACCCCTAACCTA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTCTCGCGATGG	ref_4994_reverse	9	2	9	4	3	5	1	2	6	2
AGTCTCGGGCGACATC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
AAATATTTCATGTCTT	ref_4994_reverse	3	0	1	1	2	2	1	1	1	1
GTTTGGACAGACTATG	ref_4994_reverse	5	7	15	5	8	8	5	6	3	6
GTTAGTAGCATCACAT	ref_4994_reverse	149	85	182	157	74	122	74	141	69	140
CCTCTCGTCAATTGCC	ref_4994_reverse	46	30	50	31	19	35	30	42	30	35
CGGCCGGGCGTATTTT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCAGTATCCCCTG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTCTTTCTGGGTA	ref_4994_reverse	15	13	17	23	12	19	9	20	9	6
GCAATCAGATCGATCT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTAATAAACGCCATAG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTGGCTTGCGATT	ref_4994_reverse	127	73	140	136	57	114	60	110	76	113
TGGTGGCACGATTATT	ref_4994_reverse	15	7	15	14	6	13	11	10	12	15
CTATCTTTCTCGGATT	ref_4994_reverse	2	2	1	3	0	1	1	3	1	1
GAACGTGGGCCAATCA	ref_4994_reverse	61	33	72	66	34	63	32	61	31	67
CACATGTAGGTCGTAG	ref_4994_reverse	102	42	106	104	51	74	44	74	67	95
TATGTATTGTTAGTCC	ref_4994_reverse	142	69	171	141	68	136	79	114	91	121
GGTAACCTGGATAACA	ref_4994_reverse	45	18	51	40	23	41	17	37	30	37
TAGATTCTACTTTTAC	ref_4994_reverse	14	5	14	7	5	4	4	21	7	7
GAAATCTTGTGCTTAG	ref_4994_reverse	42	35	74	76	37	49	39	57	48	61
GTTGCCGATTCCTTGC	ref_4994_reverse	71	51	101	75	42	89	48	54	57	55
ACCAGTTCTCGGTCAG	ref_4994_reverse	33	11	45	36	14	29	37	39	43	32
TAGTTTACATTGCCAT	ref_4994_reverse	41	34	75	63	29	50	24	56	37	62
GGCTGGGGATCGGCTC	ref_4994_reverse	39	21	45	33	16	40	16	25	14	17
ATACGTTCAAATCGCG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTGGGATGGCGCC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCCCGCTCCATTA	ref_4994_reverse	28	14	38	39	19	40	22	29	29	34
TAATGGGGTCACCCTA	ref_4994_reverse	60	30	70	62	28	69	32	55	35	61
GTCACACTGAGAGAAT	ref_4994_reverse	1	3	7	5	6	3	9	1	1	2
TGCGAGGTAGCTATCT	ref_4994_reverse	71	26	60	57	28	48	28	55	31	51
TGTCTACGGGGACTCT	ref_4994_reverse	30	27	47	34	17	29	26	25	17	32
CGAGATACGACTGTTT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTACTCTGCAGCG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GCTATGTGTTCTCGTC	ref_4994_reverse	56	31	52	80	20	55	26	56	38	47
ACATTTTCGATTTTCA	ref_4994_reverse	35	10	55	45	17	52	24	44	21	45
TTGGTCCATGCCCGGA	ref_4994_reverse	103	71	108	92	64	105	71	82	55	83
CCTTTTTGTAAACAGG	ref_4994_reverse	6	16	10	18	15	10	14	19	9	22
ATGCCTAAGCTCCCCG	ref_4994_reverse	25	36	30	27	31	31	37	24	48	23
TCCGAGGGTTTCCAAG	ref_4994_reverse	308	141	369	317	133	277	184	258	187	242
ATGATTGAGGTCTAAG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGCCTGTCCGAAT	ref_4994_reverse	19	18	22	28	16	17	12	10	13	10
CTACGCATGTTCTTAC	ref_4994_reverse	55	30	69	54	20	42	27	57	30	49
TTTGCGACGATTCCAG	ref_4994_reverse	49	25	66	66	30	40	21	46	20	35
GACTTTAATGACGACG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTAGTACTTGTCG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GGATGCCGTACCGTGC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GCCAAAAGCACCGGTC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTGATCGAGCTCG	ref_4994_reverse	151	90	181	177	87	181	118	155	107	159
GGCTTGTTTTGGAGCG	ref_4994_reverse	70	30	69	74	32	45	36	50	43	55
ACTGGCTCCTGCAGTT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTTCTGCGGAAAG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TGCGAAATACCTTCCT	ref_4994_reverse	16	14	29	25	12	22	17	27	9	28
GATCGTTTTCGCATTG	ref_4994_reverse	49	24	69	62	35	63	30	58	30	56
GGGCTGGCTACGTCAA	ref_4994_reverse	76	40	106	91	42	77	32	75	38	80
TCACAGTTACCCGTAG	ref_4994_reverse	21	19	27	32	17	30	26	31	20	36
TTCACGCGTCGAACGC	ref_4994_reverse	77	33	73	55	37	48	33	55	51	58
CCCGCGGTTCTGTTAC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GGTGATGACTAATTCC	ref_4994_reverse	11	17	24	17	13	11	17	15	19	19
CTGGATACTATTCCTC	ref_4994_reverse	60	50	89	87	41	80	39	83	59	75
TTGCCTGAGTCACTAC	ref_4994_reverse	301	144	286	304	181	280	169	262	182	228
AAGTCTTCTCTTTGAT	ref_4994_reverse	51	33	50	44	22	53	27	61	25	35
GTTCTGTCATAATAAC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATGGGGGTGACC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TCATAAGCGGTGATTC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTCCATCCGCTTGGGA	ref_4994_reverse	13	5	20	8	7	14	5	9	5	9
CTATGGGCGCTTAATC	ref_4994_reverse	58	25	47	33	25	38	41	32	28	40
GCACTATCTTCACATT	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CACATTGATAGTTGGA	ref_4994_reverse	105	55	122	101	48	92	71	96	54	95
GGTTTCACCATTCTGT	ref_4994_reverse	7	5	6	7	3	8	1	14	4	8
TGTCTATTCGTGGCAT	ref_4994_reverse	14	10	16	15	6	10	12	12	8	12
TAGACCTCCGTTATGT	ref_4994_reverse	27	30	31	22	24	26	27	21	23	19
AGCCACTTAGTTCTTA	ref_4994_reverse	3	3	6	11	10	4	1	9	4	4
CCGGTCGCGGAATGAT	ref_4994_reverse	180	155	268	197	163	174	173	181	170	166
GGACACCGACTCATAG	ref_4994_reverse	27	22	29	30	28	24	18	32	28	34
AGAACCCGCTAATGTC	ref_4994_reverse	71	33	96	80	27	55	40	51	48	55
ATAGAAACTGATTCCT	ref_4994_reverse	251	98	288	223	135	203	108	195	108	178
GATGGGTGTGATCGAT	ref_4994_reverse	90	57	117	97	66	78	48	77	68	91
AAAGCGACTTCACCCG	ref_4994_reverse	224	127	277	267	144	210	158	241	166	220
ATCCATGGGCATACCA	ref_4994_reverse	109	66	136	108	75	123	58	103	78	101
ATTTCGCATTCTTAGA	ref_4994_reverse	81	43	92	84	30	83	40	68	57	52
TGGCATGAAATTGGAA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTACGGCTATGCT	ref_4994_reverse	38	18	42	34	20	35	17	31	28	32
AGACGTCTCGACTGAC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGACTGCGTACCC	ref_4994_reverse	35	22	51	47	20	28	24	41	22	24
CGCATTGGTATGTTCC	ref_4994_reverse	52	22	71	43	22	42	15	44	17	37
ATTCATCTGTACCGGC	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTGCACAATGTAACCT	ref_4994_reverse	72	32	81	58	35	70	30	47	49	83
TGCTTAACTCAATGTG	ref_4994_reverse	8	5	8	8	2	5	9	7	7	8
ACAAGCAGCTAGCTCG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTGCGATAGCCA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGGCGCAGTTTGG	ref_4994_reverse	102	64	119	137	52	119	67	116	70	109
TTGGGTCCTCTATTGA	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
GGTATTTAGCAGTCTG	ref_4994_reverse	63	31	70	72	34	39	28	60	48	46
TGATAGGAACACCGAG	ref_4994_reverse	127	72	146	127	59	123	61	102	72	89
CCCGTGGCGGCCAGTT	ref_4994_reverse	207	110	267	221	124	223	136	190	153	178
CCAGTTGGATTCCATT	ref_4994_reverse	1	5	5	4	2	7	4	3	4	5
GCATCCGACGTTAGGC	ref_4994_reverse	110	92	138	138	77	130	70	106	89	123
ATTGCCACAGTAGTGA	ref_4994_reverse	12	7	8	14	13	13	11	12	10	5
TCGTCTTGGTTTGTAG	ref_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCTATGTTCCGGGTGT	ref_4994_reverse	14	8	6	9	4	20	10	10	7	7
GAGAGGGGATTGCCCT	ref_4994_reverse	82	44	95	115	46	80	54	85	60	79
GTGCTCTAGCCCCATT	ref_4994_reverse	36	30	57	38	22	50	30	30	20	53
ATTACGGTTCTGTATC	ref_4994_reverse	158	83	190	140	81	132	88	150	90	138
TTAGACCAGTTTAAGC	alt_306_reverse	89	109	127	88	118	79	120	76	119	65
CTCGATCGGCGCCCTA	alt_306_reverse	1	4	3	2	2	5	13	3	2	2
GTGTCATGGCGGGCGG	alt_306_reverse	36	32	46	29	32	28	35	42	36	40
TGTTTTAAATTATTAC	alt_306_reverse	184	223	187	145	252	147	260	143	231	126
GAGCATACTTGATTTG	alt_306_reverse	12	10	16	2	19	11	11	5	16	5
AATTGTTCTATGTCGC	alt_306_reverse	41	57	37	41	80	45	57	39	56	36
GTCCTACAGGATGTAC	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
GGGTAATTCATAATTT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
ACGGAGTCGTTCCGGG	alt_306_reverse	62	69	74	50	72	45	69	45	81	47
CATAACGGGTGGTTAG	alt_306_reverse	19	39	27	34	36	25	32	19	52	23
TGCGGTACCACGGGTA	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
CTCGAAGCTCTTCGGC	alt_306_reverse	44	53	40	35	55	50	38	44	72	45
GCAATTATCTTAGCTT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
TCCTGTTATCTTCGGG	alt_306_reverse	10	13	5	10	9	9	12	12	13	6
AGTGTCGTCCCCTGGA	alt_306_reverse	12	18	9	5	24	13	15	9	15	8
ATGACTAGACCAACCC	alt_306_reverse	19	33	21	21	46	12	50	13	40	17
AGAGAAGACCGCATCC	alt_306_reverse	5	9	5	5	2	7	7	5	8	15
GGTTCCTGTGTCGCTA	alt_306_reverse	20	18	16	22	31	15	24	13	31	12
ACAGCTAGTATTGTTT	alt_306_reverse	8	26	15	21	16	13	20	7	22	6
GGTCACGTTTCAGCCA	alt_306_reverse	85	100	110	79	126	82	111	78	124	62
GCCGTTGGAGAGGGCC	alt_306_reverse	16	8	11	2	13	8	8	14	10	6
TATGATCCGAGGCGCA	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
GACTTTGTTCTAACAT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTGGAGTCCGTTT	alt_306_reverse	44	70	46	31	49	42	36	46	49	27
TTCATGTTCCCAGAGA	alt_306_reverse	61	62	52	39	43	60	75	51	58	42
TCAGGCACTCTTTGAC	alt_306_reverse	55	85	48	47	81	52	71	37	78	38
CCATTCCCACGCCCTA	alt_306_reverse	55	102	70	42	62	54	75	60	87	46
AGCGCATATGACTCTA	alt_306_reverse	18	49	31	36	45	30	41	22	48	22
GTTTTGTGGCATACAA	alt_306_reverse	110	125	133	119	180	121	164	112	175	114
TATCGCCGCAATTCCT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGTATATCGCCTG	ref_306_reverse	28	35	23	27	26	25	33	19	40	23
TCTTTGATATCTACCC	alt_306_reverse	19	52	43	36	35	27	44	22	42	22
CCTCTTAACTCGCATT	alt_306_reverse	29	44	35	29	61	25	57	19	63	25
TTTGTACTTTTCGAGG	alt_306_reverse	31	32	25	16	28	20	26	24	25	27
AAGATTTTCCTGAAGT	alt_306_reverse	131	158	131	130	119	115	179	118	192	125
CAATTTAGGAGTCAAA	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTATCCTCACTGT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGTAAGAGTATCG	alt_306_reverse	41	35	32	35	33	34	66	32	57	30
ATATTGCGCATGACGC	alt_306_reverse	45	66	62	55	75	65	74	48	81	55
GATTCATCATATTCTG	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
GCTATAACAGTCTTGC	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
TGTACCTGTCGGATAA	ref_306_reverse	3	6	6	4	6	3	6	5	10	3
AACTTAAGGTCGATCA	alt_306_reverse	25	30	25	30	44	28	37	30	51	29
GAGATTTCATGAGACA	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
CGCAAGCATAAAGCTC	alt_306_reverse	40	60	49	33	55	33	51	44	69	25
CTTTGTCTAACGGCCA	alt_306_reverse	18	4	8	9	9	10	10	13	6	6
GCATTCTCGACCGTTG	alt_306_reverse	43	49	41	54	45	47	49	35	52	38
CGGTCTCGTCTCGAGC	alt_306_reverse	89	127	95	82	119	71	138	97	156	84
AGCTTATCTAAGTGTC	alt_306_reverse	45	51	48	47	54	55	64	40	63	46
GTTAGTCCTGTTCTAG	alt_306_reverse	14	35	27	24	24	19	18	20	29	14
GATGGCGCATGTGTAG	alt_306_reverse	11	7	13	7	6	8	11	8	7	13
GATCTTTTTACTATGA	alt_306_reverse	66	91	75	48	73	54	80	54	96	35
CTAATCCGTTTCGGTG	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGGCGTCTTTCGG	alt_306_reverse	15	13	11	20	15	12	17	12	15	6
ACTCCCAGTCAACACC	alt_306_reverse	2	8	2	1	15	3	10	5	4	3
TACACGCGCACGTGGT	alt_306_reverse	18	19	30	31	25	19	21	9	22	17
ACTGTCAATTCGAGGT	alt_306_reverse	7	22	13	13	35	13	33	16	23	19
CGTTAAATATGGTCTC	alt_306_reverse	42	42	42	38	42	41	55	36	46	17
GCGCAGTTTCGCACTG	alt_306_reverse	66	89	64	62	97	68	82	68	106	75
GCTGGGCCTGTCTAAT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTACGGTATCTTT	alt_306_reverse	27	25	20	17	33	20	26	15	24	14
CAACTCGGAGGATATA	alt_306_reverse	9	13	23	10	16	18	14	24	27	14
CTTACCCGATATTCGC	alt_306_reverse	39	75	45	39	69	42	89	30	104	33
GCAGATCTATTTAGCA	alt_306_reverse	17	11	20	9	8	14	8	9	14	9
TGAAACTGTCCGATTC	alt_306_reverse	36	25	33	26	54	32	42	31	44	24
CTTCTTCTACTCCGTC	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
CCGATTCAGATGTGTT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
GAATCGTTCCTTTGGA	alt_306_reverse	9	14	26	15	17	23	15	15	11	14
CCGATTCAGGTGTGTT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
ACTACTCAGCCATACT	alt_306_reverse	9	6	10	2	16	3	14	8	16	6
TCACATCTGAGTTCGG	alt_306_reverse	2	1	3	1	10	3	5	0	4	0
ATGTGCATGGCCCTAA	alt_306_reverse	33	86	42	43	61	48	71	29	75	43
ATTTGCCCACTTATGG	ref_306_reverse	19	20	23	16	29	11	26	18	23	19
TGTTGTTGACATGGTT	alt_306_reverse	25	14	14	16	13	12	19	14	16	15
TGGATCTAAACATTGT	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGGCAACGCCAAC	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTGCTTAATGACA	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCTCACTGAGTGT	alt_306_reverse	22	35	26	19	25	18	47	27	26	22
TTTCGCGCTATCATGC	alt_306_reverse	2	3	2	2	4	2	1	2	4	2
CGTTTTTCCCCGTAAA	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
TACAGGGCTCTAGGGA	alt_306_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTCCGACTAACTC	alt_306_reverse	7	14	8	14	17	7	27	11	17	8
GCCCTTAATAAGTTAG	alt_306_reverse	33	33	35	21	30	35	29	32	24	21
CCGCTGTGTGCAGGGT	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
AGGCGCTACATTCACG	ref_1246_RC	22	25	19	24	21	14	16	20	32	22
CTGCGTGCTGGGAGAG	ref_1246_RC	13	5	12	6	4	3	9	4	6	2
TCCGCCCTATTTGGTA	ref_1246_RC	73	62	103	81	60	83	67	80	69	77
CTACCGCCCGCTGTGC	ref_1246_RC	14	23	18	18	19	12	26	13	25	12
TCCACTGTGACTACGT	ref_1246_RC	1	5	4	2	2	2	1	6	2	2
GCCACAAGCACCTATG	ref_1246_RC	31	31	43	29	25	25	40	26	29	34
GAGGTCAATGTTAGGT	ref_1246_RC	15	16	27	9	14	22	14	16	14	24
CGGATGTACGACCTCT	ref_1246_RC	23	25	18	15	12	19	14	16	12	18
TAATGTGTAGCTTCCT	ref_1246_RC	5	11	12	10	11	4	3	11	3	7
TTCCGCCTCCCAGTGA	ref_1246_RC	21	12	33	21	13	14	13	21	9	20
GCCCACCTTCGAGCGG	ref_1246_RC	75	71	99	112	80	75	75	89	98	59
CTCAGGCTTCCTCAGC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
GACTGAAACCGCGCAA	ref_1246_RC	18	15	22	28	19	23	13	25	16	18
GACGTCCTATTTATGC	ref_1246_RC	6	7	6	3	7	6	7	13	6	9
GCTAGGCGTAGCGGTT	ref_1246_RC	3	3	15	8	12	7	7	9	12	10
GTGTGATTCTAGAACA	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTCTGCCTGGGT	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
CTATCTCTAATATCGA	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TAGCGTTTTGATTATC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TTACGAACCCTCTCGC	ref_1246_RC	50	56	60	55	58	53	49	47	71	72
AAAAGTCCGGCGGCAA	ref_1246_RC	29	21	34	24	10	20	20	26	17	27
TCGATTGGCGGTTTTG	ref_1246_RC	64	58	62	59	57	71	65	59	74	65
GCGGGGCGTTTAAGTT	ref_1246_RC	82	75	99	100	55	83	79	74	87	87
CCTGAATTGCATCCCG	alt_1246_RC	18	29	45	40	34	38	33	38	36	36
ATCCGCCAAATGCATA	ref_1246_RC	23	27	27	24	16	22	14	24	27	30
CCACAACTTACTTCTT	ref_1246_RC	94	104	123	116	90	102	96	81	101	89
AGAACTAACAATTTGC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TGTGTTGCCTTCTGGG	ref_1246_RC	22	18	22	11	18	18	16	14	21	22
ATATTAGGTTTCCCTG	ref_1246_RC	19	21	22	29	12	13	12	11	15	13
TTCTTGCACTACAGGC	ref_1246_RC	12	11	21	17	15	15	16	5	22	13
ATCCACCGTCTCCTAG	alt_1246_RC	366	297	492	397	282	393	282	373	305	378
TCCCCTTACGTGTATC	ref_1246_RC	16	36	15	10	37	11	40	12	45	16
CGCACTTTGGTGTAGG	ref_1246_RC	80	49	76	63	48	61	72	59	65	53
GGCACATTTTTCGTAC	ref_1246_RC	50	104	66	68	81	64	105	69	112	39
TTGGTTGTGTACCGAC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
GTGCACCGGCCCGGCG	ref_1246_RC	9	9	7	9	14	15	6	9	22	7
ACCGAGTGATCTTCGC	ref_1246_RC	63	44	80	61	51	54	55	59	55	50
GTTAGCGGCGATCGAG	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
AAAGTATCTTGCCCTT	ref_1246_RC	48	47	72	53	56	54	68	51	59	56
CCTTGTTGTCGAGTGT	ref_1246_RC	34	32	47	44	30	30	39	29	45	31
ATCGGGCGGGTCGCGA	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
ACGGTACGGAGGCACT	ref_1246_RC	50	31	36	43	27	41	35	38	46	31
TACTATCAGAACCCTA	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
CAGATGCGTGTGCTTA	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
CGATTATTTTTGCGGC	ref_1246_RC	19	8	21	19	18	16	7	14	9	13
TCGACCCGTCCTCCTT	ref_1246_RC	9	10	10	10	13	14	10	9	14	10
TTTCAATCACCGTGGA	ref_1246_RC	33	27	45	22	30	33	25	26	28	21
GGGTTTTGGTTATAAT	ref_1246_RC	38	33	44	35	18	32	26	27	29	33
GTCGCTTTATAGACGG	ref_1246_RC	28	34	51	43	32	32	53	43	49	36
CAGAACAACTTTTCAC	ref_1246_RC	386	296	423	376	362	359	346	300	379	392
ACCCGAGCCGCATCCT	ref_1246_RC	11	8	16	14	6	13	16	8	10	11
CTTAATCATGCCTCGC	ref_1246_RC	60	59	56	65	43	71	61	61	54	54
ACATTGTATTTGCTTC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
CCTTTCTAGGGTCTCA	ref_1246_RC	42	41	35	29	38	27	31	33	36	30
AGGTCTGGCATTTACT	ref_1246_RC	29	28	36	27	24	27	30	32	36	24
CACCAGTGCAATCGGG	ref_1246_RC	69	121	112	102	140	104	126	97	157	70
AATTCACGCCTAGAAT	alt_1246_RC	43	39	60	49	45	43	53	43	56	51
GCCTTGGTTCCAAGAT	ref_1246_RC	61	55	60	79	54	52	67	51	63	51
CCACGCATGGAGCCGT	ref_1246_RC	24	32	36	27	65	23	36	36	37	35
CGCCATCTGGAGGAAC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TGCGAGTTTCGTTGGC	ref_1246_RC	1	1	0	0	2	3	1	4	3	0
AGTCTGGTCCCTTAGA	ref_1246_RC	87	67	91	55	58	71	59	64	78	57
CCTTCTGCGCTAGCCT	ref_1246_RC	9	14	14	7	12	13	18	12	12	15
CGTGCCCCACTTTTAC	ref_1246_RC	143	198	198	140	165	141	205	133	217	132
CATTGTGCAACGCCGA	ref_1246_RC	48	42	45	39	28	56	37	38	50	36
TTGCGAATTTAGTTAG	ref_1246_RC	33	45	71	58	55	67	47	51	60	45
CTGCAAATGACAGCCG	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
GACTGCTAAGTCGAGA	ref_1246_RC	67	41	72	70	53	61	61	66	55	54
GAATGCAGGGCAATCG	ref_1246_RC	6	1	3	5	1	2	2	2	2	2
TAAGTTGCGGGGGAAC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
CGCATCCCGATTTTTA	ref_1246_RC	50	54	48	44	79	46	63	49	69	35
TTCTACACCGAGTTAA	ref_1246_RC	60	57	83	68	48	64	68	63	63	48
TCGGGGGAACAGCATT	ref_1246_RC	24	16	15	21	9	15	12	12	17	11
CCACCGACTCCCAAGT	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
CGTGATCAAACTGCCC	ref_1246_RC	23	20	32	27	25	18	10	18	26	29
GATATGGGACGCAATG	ref_1246_RC	35	5	40	44	3	27	7	21	6	24
TTGCGGACTCTTGCTA	ref_1246_RC	2	3	1	5	3	1	1	1	2	1
TGATATGTGCGCACGT	ref_1246_RC	38	49	47	48	55	31	38	33	47	33
TACTTACTTCTCTCAT	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TACGAGTTAGATTATT	alt_1246_RC	179	86	188	143	130	164	131	131	122	131
TACGTTCGCGTTAAAG	ref_1246_RC	7	8	8	6	7	10	5	8	10	10
ATTGAAAGACTTGCAC	ref_1246_RC	29	23	28	37	23	34	33	40	25	25
TGACCCCTCTATTTTG	ref_1246_RC	35	20	50	31	29	32	20	33	20	34
CTATAAGGCCTCCTCC	ref_1246_RC	48	56	63	48	37	33	21	41	34	52
AGGCTCGATAGCATTG	ref_1246_RC	159	160	242	178	169	169	163	143	189	149
GTAACGTCATCCGGAC	ref_1246_RC	200	156	241	188	148	198	156	176	162	207
AACTGGGTTCACAAAC	alt_1246_RC	53	43	93	80	57	74	40	55	70	70
TGCCAAGATACCCGAA	ref_1246_RC	21	37	32	27	38	34	27	33	39	29
ACTACTGGGTATAGCG	ref_1246_RC	16	8	21	12	7	12	11	13	14	14
CTTCCTAATTTAGTTC	ref_1246_RC	19	17	22	27	14	23	22	21	22	21
CCATCCTCGACGGACT	ref_1246_RC	16	21	30	23	22	18	16	25	19	17
CTTTACTAACGCTCGG	ref_1246_RC	23	38	30	39	40	30	27	27	26	25
TAATAGTCCTCGTTTG	ref_1246_RC	97	67	106	94	87	100	67	68	70	86
ATTTTGGAAAAAGATG	alt_1246_RC	142	92	160	130	102	132	102	150	97	112
AAACGCTAAATGGAGT	ref_1246_RC	47	34	49	47	42	34	40	36	37	61
GGTTGCATCAGTTGAG	ref_1246_RC	108	101	139	98	94	101	82	90	89	94
GTGTCCGGTACTCGGA	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
ACCCAGATACTTCTCT	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
GGGCGAAACTCCGAGA	ref_1246_RC	9	6	14	5	5	8	10	8	7	11
CGCTCGGATCTCAAAT	ref_1246_RC	1	6	7	6	5	3	6	6	1	3
GCTTTTTACCATGGCC	ref_1246_RC	108	78	94	74	76	59	76	79	65	80
AGAACCTGGGTTTACG	ref_1246_RC	24	25	34	18	16	11	14	15	28	13
TACATTATGGCATCCC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
GATTACTACTCCAACA	ref_1246_RC	3	7	1	9	6	3	10	6	3	6
GTATTATCCCGGAGTA	ref_1246_RC	10	5	7	8	15	4	7	3	2	8
TTTTACCGGTGTACCT	ref_1246_RC	64	55	81	62	79	48	65	63	74	57
GTCAGGGCGTGAGCAT	ref_1246_RC	18	13	22	22	22	21	27	20	27	17
CAGTCATCGGACCTCG	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
GCTATCGCTGTACCTG	ref_1246_RC	33	33	38	38	25	33	36	39	32	38
AACTGGTCTTTTGCTC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TCATAAGTCCCTCGCC	ref_1246_RC	21	24	36	28	28	35	26	26	28	35
GGTTCTGTCTAGGCCC	ref_1246_RC	4	12	16	9	11	11	8	8	7	9
TTGTCACACGTTAGCA	ref_1246_RC	200	158	215	205	179	169	161	178	171	144
TGTTTTCAGTTAAACT	ref_1246_RC	20	22	41	27	18	22	17	21	20	16
CTAGGTACTGTATCGC	ref_1246_RC	1	2	3	6	2	7	1	5	6	7
TCTTTGGGGAATATCG	ref_1246_RC	19	22	25	25	29	27	42	15	25	30
CCCGACGTTTCAATAT	ref_1246_RC	44	94	74	67	98	60	86	73	94	46
TCTGTTTCATGGACAA	ref_1246_RC	50	41	54	65	64	60	60	50	50	47
CACATAACGGAATCGC	ref_1246_RC	62	60	83	59	53	50	41	50	70	38
GGATTGACTTTATCGC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
CCCATAGTGTCAGATA	ref_1246_RC	33	50	39	41	66	38	48	51	48	45
CCGAGTTCATTAGTCG	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGATCGGCTCCA	alt_1246_RC	29	15	51	30	21	36	21	32	39	35
GATTCGGCAGTAAATG	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TTGTGGTGCTTCTTGG	ref_1246_RC	4	10	7	12	8	10	7	7	9	6
TTTTGGTGTCTTTAGC	ref_1246_RC	13	11	21	15	15	11	6	7	18	13
ATCGCACCCCAACCTC	ref_1246_RC	49	49	67	70	61	49	38	56	49	40
GGGATCCTCGGAAGTG	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
GCGCCGTCGTTGTAAC	ref_1246_RC	66	58	80	64	67	66	49	54	62	65
GTCCTTCCGCCCTGCC	ref_1246_RC	64	43	52	46	62	50	44	36	59	43
TGACTCAATCAACCAG	alt_1246_RC	18	24	31	31	24	16	34	22	22	21
TTTCCTAAACGCGCCT	ref_1246_RC	26	33	37	32	28	19	30	26	29	23
TTCGGCCTCCGTGCAG	ref_1246_RC	47	53	61	48	40	62	58	54	47	49
CCAACATTGTCGATAA	ref_1246_RC	37	38	37	45	36	25	43	33	45	26
TACAGAGTCTTCTGCG	ref_1246_RC	12	11	14	15	13	14	19	9	7	16
CTCGCGCACCCGGGCT	ref_1246_RC	19	21	33	11	12	23	12	25	22	17
CTTTAGAAATGTTGAT	ref_1246_RC	77	49	100	98	66	66	70	76	74	64
GTATAACCTGTGGTTT	ref_1246_RC	84	113	126	106	114	79	99	98	125	78
TTAGCGGTTTGATCGA	ref_1246_RC	4	3	16	11	5	5	4	8	9	15
TTAAGGCAATTCGCTT	ref_1246_RC	54	42	84	64	46	63	63	46	67	48
TTTGTCAAATAAGAGC	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTATATGGTGTG	ref_1246_RC	42	58	65	54	48	52	63	57	64	61
ATATTGCGTCTCCTGG	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
TGTCTATGGATCATTA	ref_1246_RC	0	0	0	0	0	0	0	0	0	0
AAATACCAACTAAACC	ref_1246_RC	64	50	64	57	31	45	52	43	45	48
ACGGGAATCACAGTCT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GGATGGCCATTTTGTA	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
AAAACGCTCCACGTTT	alt_2579_negative	99	119	114	87	88	79	85	91	91	82
ACTTTCATCGCCTATG	alt_2579_negative	18	29	28	24	40	15	31	15	35	18
TGGTCCGGGTCCAGAG	alt_2579_negative	23	31	17	9	14	16	24	22	25	21
GATATCATATCCTTAT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
CTTAATCGTCCTAATG	alt_2579_negative	35	49	39	28	65	23	49	36	66	26
CGTGGATAGTTTCCTA	alt_2579_negative	4	14	4	8	6	5	9	10	7	13
ACGCCCATATGATATC	alt_2579_negative	52	60	58	45	67	48	60	46	74	39
GTTCAGCTTTGCTCGC	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
CGGTTTTCAGCGGGTC	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
CCCCTCCCGTTCCTTT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
CGTGATCGTACAGGGT	alt_2579_negative	2	3	4	2	2	5	5	5	0	0
TTCTCAGCCGCTTTTT	alt_2579_negative	15	36	35	26	35	7	30	23	42	20
GCATGCGTTTGGGATT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
CAGTCATTGTTGGGGA	alt_2579_negative	20	24	23	23	25	24	32	17	24	21
CATGTATCTAACAGTG	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
CTCATGGCCTGGGGGG	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
AAACCACAGCACGATT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
TCCGCTCCCGGGTACT	alt_2579_negative	3	9	7	10	9	5	9	3	8	4
CTCTCCGTGCCGTGGG	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
GATCATCGCTTGTAAG	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
CCGGGTTTCGTTACCC	alt_2579_negative	0	3	0	2	7	2	4	1	3	0
ATCATCTCGAGCGTGC	alt_2579_negative	365	462	456	408	436	341	434	368	473	319
AACATTAGCTTGCTCA	alt_2579_negative	107	138	138	96	140	103	157	122	154	113
TCTTCAGCCCTGGTAG	alt_2579_negative	8	14	10	7	15	7	17	5	13	10
TGCTCTTTTTTCTTGA	alt_2579_negative	177	128	213	194	160	164	144	159	139	155
TGGTGGGGAATAAATT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
GTCGTTCTCCAACGAT	alt_2579_negative	7	8	9	7	5	5	10	6	9	3
TCCCACAATGGATATC	alt_2579_negative	3	7	7	1	3	1	4	2	3	5
CTCATGCCTTGTAAAT	alt_2579_negative	7	12	10	6	13	10	9	9	5	2
TTAATCCCTGTTCGTC	alt_2579_negative	35	42	28	25	25	31	36	21	51	25
TCTTTAGGATAGTCCA	alt_2579_negative	15	15	13	20	21	8	24	11	23	14
TGGATTTCTGCGTAGA	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
GTTTATCTATCTAGCA	alt_2579_negative	10	19	21	18	14	11	21	12	24	13
TGCCTAATCACGCTAC	alt_2579_negative	6	9	12	12	18	12	19	8	13	17
TCGGCGCTCTCCTTAC	alt_2579_negative	34	43	45	24	45	27	46	31	36	31
GGTCTCGCGGATAGGA	alt_2579_negative	62	65	79	44	77	54	62	41	57	48
CGGCTCGAGGGTAAGA	alt_2579_negative	45	82	68	61	60	59	90	50	82	52
GCGGGCTGGCTGCACT	alt_2579_negative	5	5	11	11	3	9	7	2	6	5
GTACCATGCTGTCCTC	alt_2579_negative	24	36	23	24	38	13	28	31	19	10
ATTTAACTTGTGACGT	alt_2579_negative	24	16	29	14	25	8	17	22	33	17
ACCGAGTGCTGTCATT	alt_2579_negative	125	128	111	106	148	95	136	112	153	90
TAGGATATAAATACTG	alt_2579_negative	30	32	41	27	41	32	39	22	46	31
TCTGCATGTATATTCT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
TCGTTAAAAGGTTCCA	alt_2579_negative	64	116	108	83	103	69	115	68	127	71
TTTAATTGTCGATGCG	alt_2579_negative	16	25	27	27	19	15	20	27	25	26
TCGTACGCTTAATTGC	alt_2579_negative	30	23	29	28	19	24	30	7	29	22
GCCCGTTCTCACTCTT	alt_2579_negative	19	27	21	14	19	23	14	14	32	21
TCGGTTACGGTAGGGT	alt_2579_negative	62	102	50	91	67	60	83	53	85	61
CTGAAACATAACCCGC	alt_2579_negative	142	181	199	160	171	122	177	132	188	105
GCGATCGCTTTGGGCA	alt_2579_negative	18	24	20	22	26	18	17	21	27	19
CATGGGTCAAGCTATT	alt_2579_negative	37	39	29	41	43	40	41	34	41	37
GTTGCAGGTTTCCGGA	alt_2579_negative	1	5	4	4	1	1	5	1	8	2
GAAGGGATGCGGCCAC	alt_2579_negative	6	10	5	7	2	3	5	2	5	3
CTTTTTACTTCCATGC	alt_2579_negative	20	19	29	14	20	6	16	12	22	12
TTACCACGATACTCAC	alt_2579_negative	46	117	64	63	117	28	119	33	116	51
CTCTGTAGCGTTTCCA	alt_2579_negative	40	50	37	55	54	34	42	27	68	30
GACCACAGTCTCTCCT	alt_2579_negative	0	0	0	0	2	0	0	0	0	0
AAATTTAGTTTGTTGG	alt_2579_negative	18	9	16	15	11	30	19	14	17	16
TTCAGGTCTTCTCTGT	alt_2579_negative	61	51	70	60	45	57	72	58	70	60
ATCAAATCATGCACTT	alt_2579_negative	24	30	39	35	35	23	32	23	45	21
ACGGAACGCTGTAGTG	alt_2579_negative	8	7	8	7	13	4	12	8	6	7
ACCTTGGCGAAGGACG	alt_2579_negative	16	23	20	11	18	15	15	6	12	15
GTCGCATATTGGTTGA	alt_2579_negative	16	17	14	10	25	22	46	23	25	12
GAATGTAGCATAGCTT	alt_2579_negative	29	44	39	27	33	25	45	36	39	31
TTCGAATATCGTCGGG	alt_2579_negative	6	5	5	5	7	3	7	1	6	7
TGTCGCGTAGATTTAT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
TAGGCACGTTCATTAT	alt_2579_negative	43	59	45	38	57	46	71	45	57	50
CATGACCGGCCTTAAG	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
ACTTTTGTTTCCGTAA	alt_2579_negative	94	90	87	96	91	74	98	82	98	83
CATTATTGCCATATGG	alt_2579_negative	1	0	0	0	0	0	0	0	0	0
GCTTTTCAAATGGACT	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
GATGACAACTCCATCT	alt_2579_negative	13	9	11	7	8	6	2	3	7	5
TCGTGTTGCTCGGGTG	alt_2579_negative	29	32	31	22	34	29	40	16	33	18
GGTTAATTCTTGCAAG	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
GCCTTCGCCTGATTAC	alt_2579_negative	33	43	38	39	54	27	50	28	50	37
GCTTCTCCGAAGACGA	alt_2579_negative	13	9	7	4	14	5	6	3	12	4
GGCTTTAAACTGGACT	alt_2579_negative	81	121	105	96	132	103	130	87	111	83
TGGCATCCTGAGTCTT	alt_2579_negative	107	108	114	91	111	90	136	80	121	91
TCTTGCTGTCGAAATG	alt_2579_negative	7	11	12	15	14	7	16	4	7	4
AGGGGCACCGACCCAA	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
TGGCTGTGTACTCCCA	alt_2579_negative	14	20	11	9	13	15	20	14	13	9
CCGCGTATCTCCGCCG	alt_2579_negative	64	79	66	57	83	51	90	44	100	60
TACTTGTCGGGTGGTT	alt_2579_negative	42	38	48	38	40	32	42	36	36	32
AGGCCTCGCTAGCCTT	alt_2579_negative	25	24	18	15	26	21	25	12	29	10
TCCAGACCATGTTACA	alt_2579_negative	7	4	7	3	8	5	6	3	3	4
GTTTGTGTCACCCCCC	alt_2579_negative	9	9	15	14	18	6	14	6	7	2
TCCCTCGCAACCGCTG	alt_2579_negative	44	46	34	38	49	31	40	31	41	31
TAGTCTCTGGTCACTC	alt_2579_negative	6	6	4	7	8	4	6	4	3	4
CCCAATGTTTCTCTGT	alt_2579_negative	2	3	5	2	0	1	6	0	6	2
TGCATAAAAGTCTGTG	alt_2579_negative	19	42	26	24	49	17	25	22	41	26
CATCCACACTCATTTT	alt_2579_negative	38	56	51	46	49	30	49	44	57	43
AGTCGTAGCTGCTGCC	alt_2579_negative	0	0	0	0	0	0	0	0	0	0
GCAATGGGTTTGCCTC	alt_2579_negative	20	28	26	24	36	23	36	17	30	22
AACATCTAGGTCTCTC	alt_2579_negative	23	61	53	46	63	38	65	50	63	42
GTTTCCCTGGGCACGA	alt_2579_negative	35	21	28	23	31	31	28	20	28	17
GTGTTATATTTCGCAG	alt_2579_negative	41	58	56	37	77	45	78	40	69	37
GATCTCCGCGGCTATA	alt_2579_negative	16	42	32	16	36	23	29	23	37	30
GATCTATATTACTTTA	alt_2579_negative	2	0	3	2	1	0	2	0	1	0
CGTATATGCCTTTGTA	alt_5209_RC	5	11	10	10	11	6	13	5	15	5
CGTCAGTTATAGCGAA	alt_5209_RC	50	73	50	42	68	44	63	38	68	32
ATAGACAAACCATAAC	alt_5209_RC	13	5	8	7	8	4	10	8	10	15
GCTACCGAACTAGCGA	alt_5209_RC	8	22	16	7	26	13	16	8	17	5
TTTGGCAGGGGTCAGG	alt_5209_RC	10	9	6	6	8	7	4	5	14	9
CGACGTGCATGTTCGC	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TATTTTCGTATTTACA	alt_5209_RC	2	7	6	7	9	2	4	5	8	3
TTGACACCAAAGGAGA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TCAAACGATGTGTCAC	alt_5209_RC	19	30	24	15	30	19	36	21	26	15
CCATTAGATGGGTAGT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TACGCATTCTAGCTAC	alt_5209_RC	4	6	4	7	5	2	8	8	6	2
GAGTGTTTGCTTCCAG	alt_5209_RC	31	63	55	50	50	46	76	40	63	37
GTCCTTGATGTAATGA	alt_5209_RC	18	22	23	22	18	25	21	16	26	13
GCCGACGTGTTTATCC	alt_5209_RC	16	52	37	38	48	37	61	26	64	32
AAACGGCTGCAAAATC	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TCTCACACGATTTAAC	alt_5209_RC	14	12	18	10	12	9	17	5	22	3
TCGAGTCCTGTTTCAC	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CGCCATGCTGTTCTTC	alt_5209_RC	35	39	28	25	23	22	42	23	31	20
TATACGTTTCGATACT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
ATTGTGGGATGGGCAT	alt_5209_RC	0	4	4	2	5	4	6	5	2	3
CTATCGGTCCTTTATG	alt_5209_RC	14	17	23	12	29	7	27	5	26	13
TTACTCCAGTTAGCAG	alt_5209_RC	12	26	8	19	31	12	18	8	34	23
GATAGCCGCGGTATGT	alt_5209_RC	1	1	4	3	0	2	1	2	1	2
GGTGTTAATTGTAACT	alt_5209_RC	34	37	29	17	32	20	41	15	44	30
TCAATGTTAGACAATG	alt_5209_RC	47	86	36	49	83	40	82	49	77	38
TTTTCTAATAGAAAGG	alt_5209_RC	14	19	14	21	13	11	21	16	22	21
GCCCGTCTGTCGTCGG	alt_5209_RC	35	59	27	16	85	20	83	28	78	29
AGGCATAACCAGGGTA	alt_5209_RC	14	13	20	12	17	5	12	13	12	13
TCGGATCGCATTGGGT	alt_5209_RC	2	0	10	8	3	2	8	2	4	3
GGCAAATTGCTTCGAG	alt_5209_RC	17	11	14	12	19	20	16	9	28	6
CAGTTTCTGTATTAAT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
ATCTGGATGTCACGTT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CCAGGGGATGATTAAC	alt_5209_RC	3	6	1	5	10	3	6	5	13	5
CCCTACAACTAATGTT	alt_5209_RC	12	25	12	12	24	12	29	13	23	6
CGCTCTGCTGATTCAA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TCGTGCATTCTGACAA	alt_5209_RC	68	88	65	67	86	45	91	63	107	58
GATTACCTTGTTTGAC	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
AGTCGTACGAGATACT	alt_5209_RC	13	8	15	13	13	10	19	10	14	10
CCGAATCTGCTTGTGC	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
GGTTGATACATCGTTA	ref_5209_RC	13	34	19	14	16	23	21	14	32	23
TGTTACACACCGTGTT	alt_5209_RC	2	1	6	3	8	1	4	1	6	5
TACCTCGGTCTGCTTA	ref_5209_RC	222	308	250	226	285	205	317	170	356	154
AAGCGTAGTAGGCTTG	alt_5209_RC	13	14	8	10	17	11	18	11	11	12
TCGAGTAAACTCAGAC	alt_5209_RC	50	82	80	57	95	66	89	49	83	41
GTGATCTTACTCATGG	alt_5209_RC	37	60	34	32	55	29	55	38	39	37
CTTGTTGTTCGTTGTT	alt_5209_RC	10	8	14	14	15	5	9	8	14	3
GCCCTGGCGTTATTAG	alt_5209_RC	13	11	15	13	23	10	18	18	15	14
TATCAGACTTAGTCCT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TCTTTATATTGCTGTC	alt_5209_RC	27	40	29	22	49	34	41	23	46	28
AGGTTGCAAAATGATT	alt_5209_RC	54	77	80	54	93	71	67	56	90	85
GGCCCTGTTTCCGATG	alt_5209_RC	5	11	11	4	5	9	5	8	6	5
TTCACGACGCCAATGA	alt_5209_RC	3	3	3	1	4	4	3	4	1	2
TCTCGAACAGCTATTT	alt_5209_RC	88	158	118	90	201	102	199	104	216	98
GCTCTCTGTTGACTCT	alt_5209_RC	37	47	50	39	60	46	47	41	66	40
CAACGCTTCGCGGCTG	alt_5209_RC	40	56	78	48	51	41	71	53	52	38
AGCTGTTAATTAGTAA	alt_5209_RC	16	16	19	16	12	24	26	13	33	16
GGCTTTGGGATTCCTG	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
AAAGTACGAAAGACCG	alt_5209_RC	9	18	15	12	10	10	11	12	20	11
CAGCATATTATTGTTT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CATATGCCATGGAATT	alt_5209_RC	4	16	14	7	8	8	13	10	12	4
AAAACCCCAATTTGCA	alt_5209_RC	81	102	102	96	91	78	106	86	95	63
CGTGGTGTTTTCGAGA	alt_5209_RC	13	16	17	10	26	11	37	6	20	15
TTGGCGGCTTTCGTAA	alt_5209_RC	8	31	28	32	25	12	21	27	42	16
GTGACTTATGATAAAT	alt_5209_RC	37	68	63	49	60	61	73	41	71	44
TCCTTCTTATCCTAGT	alt_5209_RC	9	35	17	15	25	12	16	10	17	10
AATGCCTTGGGACCCT	alt_5209_RC	74	115	96	86	128	65	94	77	100	63
ATCGGCTGTTAGGCTA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
ATAGCTCTCTGGGGAG	alt_5209_RC	36	37	29	33	56	38	49	30	50	29
TTGTATGCCAGTTGCT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
ATTACAGGATTGCTCC	alt_5209_RC	13	6	10	7	4	4	7	3	10	9
ATGCTCCACGTTCATG	alt_5209_RC	10	18	17	13	15	4	33	9	20	8
GAGGAACCATCTCGAT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TGCTGACAGCCTGTTA	alt_5209_RC	0	3	1	2	3	5	6	2	5	2
GTGCATAATTTGCACG	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TGGATATTTTTCTCGG	alt_5209_RC	136	189	183	132	189	135	190	138	157	111
CACCGGAGTGACTAAG	alt_5209_RC	15	42	24	16	46	22	51	16	58	18
GCAGAATAAAGCATAC	alt_5209_RC	62	88	60	58	75	44	68	49	93	43
TCTACCACTGTCAAAA	alt_5209_RC	14	17	20	8	22	8	12	7	16	9
GCTACGTGGTTACCGT	alt_5209_RC	35	34	21	16	33	27	37	18	40	16
GCTCAAGAAGTGAGAT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TGCGTCGTTCGTATTG	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
GCCACGCAACTAATCG	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CATATCTGTGTGGGCG	alt_5209_RC	0	5	5	2	6	1	8	3	1	2
GTAACATTTTGATATC	alt_5209_RC	15	5	4	13	12	5	9	5	19	9
TTTTATATTCATTATA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTCCGTATTACT	ref_5209_RC	42	46	63	66	64	45	53	39	78	44
AGATGCTCCTCTACTC	alt_5209_RC	20	31	19	12	16	11	13	9	26	13
CCGAATAAACCCCCAA	alt_5209_RC	3	6	2	2	11	0	7	4	14	2
TTATTATGATCGCGAT	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
GTGGTGTGGGGTGGAA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
ATGCGTATAGGCTAGA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
AATTGTCTATTGGGGT	alt_5209_RC	11	14	18	10	15	19	21	12	20	12
TTGATATGCTCTGCCA	alt_5209_RC	11	11	9	20	24	7	14	24	20	8
TGCCTTTGTACTGTCG	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CTCCAGACGCACTCTG	alt_5209_RC	6	10	5	6	7	5	14	1	14	5
CCCCGTGCCGTTTTAT	alt_5209_RC	29	40	38	28	37	26	45	28	42	33
GGGCCTATAGTAGAGA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CTATCGTTATAGTTAG	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CCGTACGTATATTATG	alt_5209_RC	0	6	2	0	8	1	14	2	4	0
GACAATAAACGCATAC	alt_5209_RC	10	9	13	9	14	9	12	10	12	7
ATGAGACTCTTTGGAG	alt_5209_RC	106	125	110	94	150	82	154	77	149	82
CAAATAAGGAATTTCT	alt_5209_RC	30	45	45	47	58	41	45	28	64	35
TGCCTCGTAAGGCAAA	alt_5209_RC	3	6	2	0	2	1	4	1	3	0
TGGCATGTTTTTGCTC	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CTTAACTTTTCTACAG	alt_5209_RC	31	63	45	38	64	41	55	23	77	45
CGATTAATGTCACAGC	alt_5209_RC	102	126	104	92	161	107	179	102	163	87
GGGTAATTTACACCTG	alt_5209_RC	8	22	9	3	15	4	23	11	9	5
GTGTTGCCTGTGGTGT	alt_5209_RC	5	5	3	3	3	2	2	0	5	1
TGCCAGCATTCACTTG	alt_5209_RC	22	35	24	20	35	15	35	11	36	17
CACTGGCATTACCTTT	alt_5209_RC	44	87	73	46	79	30	86	40	73	41
GTCCGGGCTGTATTTT	alt_5209_RC	24	37	30	21	39	25	40	22	29	27
AGTCGAATGAATGCCA	alt_5209_RC	8	10	4	7	6	8	9	5	8	5
TTATCCGAAGGGTTCT	alt_5209_RC	14	25	14	15	26	17	23	16	26	14
CGTTTGCTCCATTAAC	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
CTGTGCAAATGTCCAC	alt_5209_RC	14	31	27	12	20	12	17	13	24	11
CAATCAGCTTAGTGTA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
GACATCGCGTCAGTCC	alt_5209_RC	1	5	2	1	4	8	7	6	16	2
GTTAAATGGGATAAAG	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
GCCCCCAAGGTCTGTA	alt_5209_RC	0	0	0	0	0	0	0	0	0	0
AGGTAGGGTTTTTAAT	alt_5209_RC	1	3	5	4	6	3	2	3	4	4
GCTGTGCTGTCATAGA	alt_5209_RC	41	54	50	45	49	35	64	37	61	26
ACACTTTTAGCCACGC	alt_5209_RC	1	8	12	3	7	1	6	0	1	3
GCACCGATTTCACGAT	ref_5657_new	0	0	0	0	0	0	0	0	0	0
TTAATAGCCCACAGTC	ref_5657_new	0	0	0	0	0	0	0	0	0	0
GCTTAGCGGCTTTGGT	ref_5657_new	23	49	57	47	58	23	60	33	63	39
GGCGGCAATTATATCC	ref_5657_new	15	16	21	21	33	9	23	22	33	18
ACTTCAGCCTAAGGCT	ref_5657_new	23	47	33	31	52	22	41	25	52	22
CAGTCATCACCTGGGA	ref_5657_new	4	7	10	10	16	9	19	6	16	5
TAATTTTACAGATTAG	ref_5657_new	205	258	230	202	278	207	316	221	294	187
TTTTATTCTTCCTGAT	ref_5657_new	1	2	0	0	0	0	0	0	0	0
TCTAAACATCCCGCAT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TATTTCGCTACTTACG	ref_5657_new	9	44	22	8	62	12	65	6	52	12
ACAAATATACCGTCCG	ref_5657_new	74	103	86	86	120	68	117	56	135	73
CGGCATTGCGCCGCGC	ref_5657_new	4	6	6	2	6	1	4	2	9	1
TCTTTATGCGCTGGGG	ref_5657_new	40	54	47	33	61	41	54	35	77	35
TTCAGTGAGGCTGTCA	ref_5657_new	7	14	4	4	18	5	12	6	4	3
TGATTGGAACCTTATT	ref_5657_new	26	41	39	29	29	32	54	23	54	33
ACTGTCTGCCTAAGTT	ref_5657_new	20	21	20	10	23	16	22	13	39	19
TCCTTGGGCGTTTTCA	ref_5657_new	7	6	5	8	8	6	8	5	11	6
CCACATAAAGTATCTG	ref_5657_new	47	105	57	39	109	41	95	38	117	35
GGGTATTGGCCCCTTG	ref_5657_new	12	20	18	9	23	8	20	13	21	10
TGATTACCCTGCATCC	ref_5657_new	15	19	23	10	44	10	29	16	25	20
ATCTACCTTTTTAAGA	ref_5657_new	26	47	32	41	43	38	37	36	58	28
ATTTGCCTTAGATGAA	alt_5657_new	6	2	3	3	2	3	6	2	1	4
GGGGTATCGCTTGAGC	ref_5657_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTGTGAGCCGG	ref_5657_new	6	15	6	12	10	11	11	6	13	10
GTCCCGGACTCAAATG	ref_5657_new	6	8	12	3	15	7	12	4	15	8
TCCATAGACTTCTTAG	ref_5657_new	0	0	0	0	0	0	0	0	0	0
CCTACTTCTGTCTAGT	ref_5657_new	16	28	16	24	40	21	49	17	48	23
TTCCTGGCACTTCTCG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
ATTTTCCGGTAGTATC	ref_5657_new	86	84	48	60	63	65	97	55	90	55
CCGGCAGATAGCTATC	ref_5657_new	16	23	15	12	19	7	21	10	26	8
CATGTCGCAAGACTGT	ref_5657_new	53	100	76	67	84	43	106	55	74	58
CCACCTGCGGGATGTT	ref_5657_new	21	28	33	30	42	19	54	22	37	27
ATTGACGTTGACCAGT	ref_5657_new	123	235	147	140	205	114	218	117	248	87
TGGTCGGGACTCCTGT	ref_5657_new	3	1	2	3	7	1	10	2	5	3
CCATTTCCGGCCAAAA	ref_5657_new	19	16	13	19	29	14	26	23	22	12
GGGTCAGGTTTAGGTG	ref_5657_new	2	6	0	3	3	3	3	2	1	2
TGTAGCTCTTCTACGC	ref_5657_new	18	35	33	20	22	21	37	17	26	21
CGTTTACTGTACTATA	ref_5657_new	15	20	22	10	24	12	24	6	29	8
GCTATTTAAAGTTTCT	ref_5657_new	0	0	0	0	0	0	0	0	0	0
CCAGAGTGGGATCGCT	ref_5657_new	22	29	26	24	38	20	21	21	40	26
GCGTTGAATCAGAAGA	ref_5657_new	40	60	51	52	51	49	54	35	42	31
CCACAGTTGAATTGTA	ref_5657_new	10	23	16	11	16	22	25	10	27	8
CCAGTAGGATCGAGGG	ref_5657_new	13	38	8	17	56	10	68	15	62	15
AATAAATTTTCGGGAT	ref_5657_new	11	20	11	11	18	16	18	9	11	12
TGCATATGTGTTTGTT	ref_5657_new	6	12	14	7	20	5	13	12	16	11
TTGCTGCGATATTTTA	ref_5657_new	8	19	13	21	22	11	29	15	20	11
ATTCGCATACTTTAGG	ref_5657_new	143	195	151	122	179	111	205	99	203	126
CTCCTCGGGTGGCTTT	ref_5657_new	0	0	0	0	0	0	0	0	0	0
TCTTTTCTGAGTGGCG	ref_5657_new	36	51	51	24	44	35	51	26	38	24
CAGATTCGATAACTTC	ref_5657_new	6	19	12	10	15	8	23	5	27	14
TTTTACCGTCATCCAT	ref_5657_new	0	0	0	0	0	0	0	0	0	0
CTAAAGGAAAGCCCTG	ref_5657_new	94	136	111	79	146	89	174	83	171	93
TCAATTAACTCAAAAC	ref_5657_new	16	31	17	21	21	12	33	21	39	15
CTCGTATACCGTGACG	ref_5657_new	25	51	50	43	38	37	52	26	48	26
ATCTGCCAGACATACA	alt_5657_new	102	172	173	141	170	128	174	111	184	131
GGCGGGGACTAATATA	ref_5657_new	0	0	0	0	0	0	0	0	0	0
AAGGTTGTATTAAACA	ref_5657_new	17	19	23	5	24	12	16	15	19	24
AGTCCGTAATACTGAA	ref_5657_new	2	8	5	4	14	5	10	6	14	4
GGGGCATGCAACCTTT	ref_5657_new	13	23	22	8	23	15	19	21	26	15
TCTCAGGTCTTGGTCA	ref_5657_new	20	14	30	33	35	22	33	18	25	17
TGTTTCGCAACGGATA	ref_5657_new	0	0	0	0	0	0	0	0	0	0
TCGACGACCGCTCGAG	ref_5657_new	143	189	161	142	202	126	203	126	203	99
ACCAGGACTTATGAAG	ref_5657_new	14	13	14	7	26	4	16	12	18	8
AGTTGTTTTCAACATC	ref_5657_new	7	15	14	10	18	22	19	12	14	11
TATGTCGGATTTTTCG	ref_5657_new	1	5	2	1	3	7	4	2	8	0
GTCTAGCTGTGGAATT	ref_5657_new	77	122	105	80	144	59	132	70	141	104
CTTTTGACTAGATTGC	ref_5657_new	26	46	32	33	72	39	63	28	57	37
GTTCGCGCTCGTACCA	ref_5657_new	30	45	27	23	62	35	39	31	71	31
CCAGTTTCTGCTGCTA	ref_5657_new	2	8	2	3	2	0	6	2	2	1
TGTAATGGCAACATCG	ref_5657_new	16	33	16	19	34	17	33	17	38	20
TTGCCAATTTGCTCAA	ref_5657_new	91	148	106	60	129	79	161	63	205	69
CGTATCGGATATAATT	ref_5657_new	206	304	259	205	314	202	393	193	359	179
TATATTCCGTCCTCGG	ref_5657_new	19	28	26	10	19	16	32	11	25	14
TTGTTGTGACGCTGTC	ref_5657_new	62	84	73	64	98	73	80	60	118	66
CTTAGCCCTTGACCCA	ref_5657_new	0	0	0	0	0	0	0	0	0	0
TAGCGTCTTATCCGAT	ref_5657_new	5	9	6	6	6	7	13	7	12	7
TCGAAGGTCAGTTTAC	ref_5657_new	0	0	0	0	0	0	0	0	0	0
CGGTCGGATATCTCGC	ref_5657_new	9	30	6	10	19	13	28	10	28	7
ACAGGAACAGAGAGTC	ref_5657_new	11	22	14	5	17	11	21	22	15	18
TTCGACGCAACGGCAT	ref_5657_new	22	13	14	10	20	12	17	11	21	11
TTGGCGGTGTGTCGGC	ref_5657_new	38	48	36	28	27	29	38	26	38	29
ATCACATCAGTGGCCA	ref_5657_new	11	22	17	13	16	8	16	17	13	13
CAACTCGTTCTCTTGT	ref_5657_new	22	34	23	26	29	16	34	22	29	22
GATCTCGTATACATTA	ref_5657_new	5	7	6	0	9	6	7	2	9	4
GTCTAATAGCTGAGTC	ref_5657_new	1	3	6	3	10	3	5	3	11	10
ATCCTCGCGGCACTGA	alt_5657_new	136	217	165	161	187	120	215	124	199	102
CGCAACCGCATTTGGT	ref_5657_new	10	28	16	14	31	14	22	7	23	13
AAGAAGCTTTACTGTC	ref_5657_new	38	47	44	37	65	41	44	44	49	24
TGTTAGGGCCCGGCGA	ref_5657_new	88	139	123	92	126	117	158	90	167	84
TATTTGCCGTCCTGCG	ref_5657_new	0	0	0	0	0	0	0	0	0	0
TCTCTCTTCTAAATAA	ref_5657_new	13	19	17	5	12	13	27	14	21	11
TATGCCTGAGAAGGGT	ref_5657_new	12	16	15	5	15	16	17	8	23	6
TACCGATGCGATCCGG	ref_5657_new	55	105	69	50	62	46	127	40	109	39
GAGGCCAGCGCCGTGT	ref_5657_new	4	10	13	7	12	4	12	7	8	5
CTAGCGTTGGAGGAGT	ref_5657_new	36	53	45	40	59	31	67	32	60	29
TTGACGCTGTGCCTCG	ref_5657_new	21	33	24	24	20	16	23	13	40	19
AAGTCTCGCTAAGGAT	ref_5657_new	0	3	5	5	5	4	3	2	4	3
GCGTGGTTCTAACTCG	ref_5657_new	7	13	11	9	10	13	6	7	11	6
CCTCGTTAATCTGTGA	ref_5657_new	5	10	4	2	6	6	5	3	10	1
GACCTTTCCCGGACCA	ref_5657_new	0	0	0	0	0	0	0	0	0	0
AGCTCACGTAGCACCA	ref_5657_new	0	0	0	0	0	0	0	0	0	0
GAATGGGTTGTAGAGT	ref_5657_new	37	39	35	26	62	25	50	29	50	31
AATTGCCCCCGTCTCG	ref_5657_new	13	22	20	13	19	14	18	8	16	10
ATATCGGCCAGTAACC	ref_5657_new	52	106	78	76	106	66	114	54	99	56
ATTGCGAATTTAAGTC	ref_5657_new	139	253	177	142	280	110	217	158	267	129
TAACATGTGGTAGTCA	ref_5657_new	58	60	65	41	93	52	76	53	74	44
AGCAATATAGGGATGC	ref_5657_new	0	0	0	0	0	0	0	0	0	0
ATGGTTCTGGAGCATG	ref_5657_new	2	3	1	2	5	4	5	5	8	3
CTCGCCGTACTTCTGT	ref_5657_new	10	85	15	21	103	19	83	14	90	14
TCGAGTTTTAAGATCG	ref_5657_new	19	23	31	34	27	15	33	27	40	13
GAAAGTGCTTTACCGT	alt_5657_new	23	34	34	31	47	26	53	25	55	18
TTTCTTGTCTGTGCTC	ref_5657_new	0	0	0	0	0	0	0	0	0	0
CTGAGTTCGTATTTTA	ref_5657_new	3	9	5	9	17	10	6	8	8	5
TGCATTAAGCCATCAA	ref_5657_new	29	36	24	25	38	23	35	19	26	17
GCGTCCTGGCCGCGTA	ref_5657_new	34	45	41	34	41	44	47	34	59	24
CAGTGGTAATGCGGGG	ref_5657_new	0	0	0	0	0	0	0	0	0	0
TGTCTCGGATAGATTC	ref_5657_new	13	20	15	13	16	12	13	7	18	14
TGTGTTATCCTTAGGT	ref_5657_new	38	53	50	30	55	28	65	26	65	35
ACTCAGGACGGGTATT	ref_5657_new	0	0	0	0	0	0	0	0	0	0
CAAAAGACCTGCACGG	ref_5657_new	5	14	14	20	16	9	18	11	28	15
TTTTGGTATTATGTAT	ref_5657_new	15	17	21	20	9	14	33	13	30	10
CCGACGGCATGGTAAC	ref_2534_RC	28	25	28	33	21	27	22	17	39	31
GTGATGTACACATGGT	ref_2534_RC	27	29	41	26	30	19	28	31	41	25
TGGGCTCAATGTGAAG	ref_2534_RC	2	1	2	4	0	1	1	0	1	1
TTATCCCACCACACTA	ref_2534_RC	94	119	130	126	113	135	108	93	128	84
TTATTCACCCATTATT	ref_2534_RC	10	14	7	4	5	10	8	12	15	4
TCCAACTATGACACCC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCTAATCGGGTT	alt_2534_RC	264	374	323	308	355	269	350	248	366	241
TTGGGCGGAAAGGTTG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTTTGGGTGTTT	ref_2534_RC	35	32	40	36	42	22	38	35	39	31
AGTTCTCGGCGTCACA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TGCTAGCCAATGAGAG	ref_2534_RC	124	172	147	123	149	127	202	103	195	117
GTATTCTGGACTCGGA	ref_2534_RC	35	56	42	42	60	43	71	44	68	30
TATGGGTTGTTCCCGA	ref_2534_RC	32	33	32	28	21	25	48	31	52	29
AGACGAGCTATAAGCC	ref_2534_RC	49	42	69	54	35	56	26	72	53	38
TTAAGGTGCGCTTCAC	ref_2534_RC	24	27	26	30	28	17	33	29	22	27
ATCTACGATGGACAAA	ref_2534_RC	63	79	90	73	80	76	87	61	79	55
CCCGCTGTGCTAGATG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GACTTCCTCTCTCCTA	ref_2534_RC	6	7	8	2	1	4	4	2	5	5
AGCATTTTGGCTCAGA	ref_2534_RC	25	21	12	16	19	18	21	16	23	22
TCTTTGTAGGACATAC	ref_2534_RC	46	74	55	45	48	41	54	43	63	52
GCGTTCGTAAACATAG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTTATGAAGTTCTTGT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TGCTTTGTTCTTCTGA	ref_2534_RC	23	18	33	22	31	17	20	25	30	15
GTGAAAGTAAGTTCTG	ref_2534_RC	9	4	7	12	8	3	11	6	8	5
CCCTACCCTTAATACC	ref_2534_RC	20	27	23	15	24	14	24	17	27	21
AGGTTTGTGGACCGTG	ref_2534_RC	5	5	4	10	12	9	6	7	6	6
GGTTTGTTGGATGCAG	ref_2534_RC	17	27	18	17	15	22	21	20	25	7
TATAAATATCCATGTG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTGCGGATGCTTGGTT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CTACTGGTAGCTATTC	ref_2534_RC	31	34	32	30	51	39	45	22	41	34
TAACTACTAGCTTCTC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GACCACTCGGGTTTCG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AACGTAAGCTGCCTAG	ref_2534_RC	35	41	62	55	49	46	57	43	59	43
TCGTCCCTCACTACCT	ref_2534_RC	16	34	23	27	36	21	26	24	32	20
ATCCGGGTAGGATACT	ref_2534_RC	5	12	5	6	14	3	15	7	21	2
TCAGTAAGGAGTAGGT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AGATCCCAGATTGGGT	ref_2534_RC	27	30	23	32	33	24	35	35	30	27
ACCCTCCATTTGTTTA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AGCGAACTATGATGTA	ref_2534_RC	7	8	5	5	8	4	10	6	12	4
CGGGTATGATTTAAGG	ref_2534_RC	6	3	4	2	14	5	8	2	1	4
GGACCCTCTCGGCAAC	ref_2534_RC	87	70	84	94	67	65	73	73	70	69
CTGACACGGTTGTGAA	ref_2534_RC	15	13	16	10	27	17	22	18	15	19
AAAATGCAGTGTAGGT	ref_2534_RC	121	131	171	104	136	129	165	102	148	90
CTGTATCATGCACAAT	ref_2534_RC	62	92	85	63	97	74	95	65	85	63
TTAATCGGCCCTTCTA	ref_2534_RC	4	5	9	8	1	4	4	6	5	7
GTGTAAGAACCGGAAG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GGATAACTATTCTTAT	ref_2534_RC	51	53	81	63	67	58	81	61	70	59
TGGGTGACTGTTGATC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GAATCTTAACGCCTCG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CGTTGGTCCTTACGAG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTAGAGTCTCGCAGGC	ref_2534_RC	58	87	84	62	68	60	62	58	76	66
GCGCGGTAACAATTGG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AACCGGTTAACGACGG	ref_2534_RC	3	11	8	4	10	8	5	5	15	4
AAGTTACGGGTTTGTG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTGTCGAGGCCAATCC	ref_2534_RC	43	48	78	72	53	49	63	42	64	55
AACAACTTCTTTCCAT	ref_2534_RC	32	41	35	28	38	29	30	36	30	33
GTGGAGTAGTAAGGGG	ref_2534_RC	27	35	20	32	36	12	36	17	35	18
AGCACCGCTGCCCCAG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CATGGGCTATCACGGG	ref_2534_RC	135	137	188	162	168	169	167	154	172	136
CCAGTTAGTAGGGCGC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GCTTGTTAGTAGTTAT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TTACTCGGTAGGGCAT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GCCCTCTTAAATTCGT	ref_2534_RC	5	15	10	11	15	11	8	7	13	1
GAGCCGCTCCATTCGG	ref_2534_RC	16	21	14	13	24	15	16	12	30	14
GACTTCCTCTCTCCTC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AGCATTATCAAACATA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GGTATGGAACTGTACC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CCTCTTAGCCAGATAT	ref_2534_RC	3	9	4	5	13	2	9	5	7	5
CTTGTGCGGCCTGCGT	ref_2534_RC	7	17	10	6	18	8	13	10	9	9
CGCTGTCCTACATTTC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTAGATAACTTTACGG	ref_2534_RC	4	8	4	4	5	6	9	1	7	5
GTACTTCATGCATTTT	ref_2534_RC	16	18	26	22	14	17	25	11	20	16
ACCAGTCGTGGTCACT	ref_2534_RC	11	67	25	31	83	24	72	23	88	16
GTTATGGGCCTCCATT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CTAAGGGGCTCATAGT	ref_2534_RC	25	24	23	14	43	17	33	31	34	13
ATATTTCCATTTCTTC	ref_2534_RC	24	20	16	19	18	16	13	14	16	12
ACCCAGGTTAGTGGGG	ref_2534_RC	17	25	25	16	25	13	22	17	31	27
TGAGATGCTCATGCGT	ref_2534_RC	17	25	20	23	25	17	25	30	27	24
TTTCAGTCCTTTGTTC	ref_2534_RC	3	4	13	6	9	3	2	6	5	2
TCACCACCGTCCACAC	ref_2534_RC	7	2	6	4	9	5	4	6	2	4
TCTTCAGTGGACTTTA	ref_2534_RC	28	34	24	26	35	13	26	23	26	19
TGGACATGAGTCATCC	ref_2534_RC	23	31	43	24	27	26	23	20	31	21
TGCCCTGATCGCTTAT	ref_2534_RC	44	53	41	40	49	26	22	37	62	30
TTCGCTGTTTGAGTGC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTATGTTAACCG	ref_2534_RC	3	5	1	0	3	1	9	3	4	4
ATATCCCGAACTTTTC	ref_2534_RC	11	20	30	15	20	16	19	14	25	13
TAACGCGACCTTTATC	ref_2534_RC	27	28	20	29	35	27	36	24	28	25
TGCATACTTACTGTGT	ref_2534_RC	4	30	7	5	27	8	31	6	38	5
GCAGAGACGCTCCATC	ref_2534_RC	1	3	0	4	1	1	2	0	2	0
GCACTGAGGAACTGGA	ref_2534_RC	5	3	2	7	4	3	6	5	3	3
AGAGCTTCCCGCTCGC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AGTATGGGGGCTATTG	ref_2534_RC	12	12	9	6	20	22	14	15	27	18
CACACGGGTCCAGGTA	ref_2534_RC	6	1	3	0	0	1	6	5	1	4
TTGATGGCTTCAACAT	ref_2534_RC	26	25	24	19	20	15	18	13	27	12
CTTGTCGGTGCTTCCA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTATCTTAACGCCTCG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AATGTTTATCATCTCA	ref_2534_RC	0	1	1	3	2	0	2	2	5	3
CTACAGACAGCAGCGG	ref_2534_RC	28	23	28	27	35	34	30	26	17	28
CTAGGGCCGATACCGT	ref_2534_RC	1	5	2	2	4	2	4	5	0	4
GTTTTGGTCTTAGGTA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CGCGCTGCCAATGCGG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTTTGATATTTG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TATTTTTTCGAGGGGG	ref_2534_RC	50	59	97	53	62	60	57	45	72	54
CATCGCGAGTCTTATG	ref_2534_RC	1	1	6	8	2	4	4	1	6	1
TCTTTTGTACCTCCTC	ref_2534_RC	12	11	8	10	10	14	12	7	19	8
CCATGGCCTCGTTTCA	ref_2534_RC	19	16	18	17	12	16	10	10	15	20
TCTGTGCTCTTAGACC	ref_2534_RC	19	29	15	33	18	20	22	18	28	11
GCGAATGACTATTTCA	ref_2534_RC	9	10	8	4	9	2	8	5	11	7
ACTCGTGGTCCCGGTA	ref_2534_RC	40	60	51	63	54	53	51	36	58	38
GTTACGCACCCCAAGT	ref_2534_RC	18	35	19	25	30	24	38	17	45	10
TGTGCACTTAGACAGT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTTGCGGATTTCTAAT	alt_2534_RC	28	36	43	47	53	50	36	39	45	32
TTTGCAGGCAAGTTCT	ref_2534_RC	91	60	94	75	85	103	90	62	108	77
CATTAGTACGTTCTCC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTTTGCTCCTGTGTTG	ref_2534_RC	14	27	16	10	9	20	9	15	20	7
TCTTGTTTTATGCACT	ref_2534_RC	39	29	44	43	39	22	46	20	44	24
TGCGGGACCTCAGGAA	ref_2534_RC	6	4	7	5	6	8	9	3	14	4
CGGTTTTGGTACGAAA	ref_2534_RC	40	32	53	38	40	45	45	35	41	34
TAGTCAACGCAACCTA	ref_2534_RC	5	6	3	3	4	1	6	2	4	0
AGGCACACATATGGCA	ref_2534_RC	62	71	72	53	51	63	54	39	58	47
CCTCTCCGGCTCTGCT	ref_2534_RC	7	16	10	7	12	15	12	12	17	4
AGAAAGTTCTCATCGG	ref_2534_RC	34	35	39	30	36	34	48	37	40	21
AGTCTCCGCGCTGATA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TCATACGAAGTCCAGG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AGATCTTCCAATGCGG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
ATCCGAATTAGGGTTA	ref_2534_RC	8	11	6	6	11	6	12	6	10	7
TAGCATTTAGCTATGG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CCTTAAGCTACAATTT	ref_2534_RC	46	66	63	48	61	49	75	44	63	42
GTGATCCGAGGGAGCC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
ATTTGGACGTCTAATG	ref_2534_RC	67	66	73	56	68	51	63	66	72	60
AAGCGTGGTGCTGTCG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TACTTCAGAATTTCAG	ref_2534_RC	79	67	102	79	86	74	101	66	92	76
GCCCTCTGGCTTCCGT	alt_2534_RC	12	19	17	19	29	16	19	9	20	14
TTGTTAGTGTGAAAAC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGCATGCTGCAC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GGTTAGATCGGTGCAT	alt_2534_RC	139	163	159	128	176	120	178	129	220	108
CTGTGGGATAGATTGG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
ACTTCTGTCAAAGCGG	ref_2534_RC	42	42	47	37	44	32	46	36	58	34
TGCATAGCCTGTAGTC	ref_2534_RC	14	17	18	15	26	15	29	14	22	21
CTTACACTGTGATGAG	ref_2534_RC	57	56	59	53	58	43	72	51	57	43
AATCTCGTATGGGTGG	ref_2534_RC	282	289	376	310	298	246	311	280	323	260
GAAGCTATCCTTTTGG	ref_2534_RC	34	31	46	34	47	30	36	43	42	32
GCGCTCAAGTTTTTTC	ref_2534_RC	30	38	40	27	40	30	42	20	37	25
AGTATCTGTCGCTGGA	ref_2534_RC	0	3	1	3	2	1	3	1	6	3
GACTGTGCACACAGAT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CCTGTTCTCGTGGTAA	ref_2534_RC	12	20	13	11	18	16	21	7	24	11
TATTTTCGGAAATTTC	ref_2534_RC	23	39	27	39	33	24	46	28	56	32
ACTGGCATAACGTTCT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CAAGCTTTCTGCCTTA	ref_2534_RC	7	13	3	5	13	4	18	9	18	5
ATTTACGAAGATGACC	ref_2534_RC	13	17	16	14	17	15	20	16	21	18
AGTAAGAGCATAATTG	ref_2534_RC	3	0	2	1	4	0	0	0	1	3
GAATGTTCCCTTGTAT	ref_2534_RC	94	107	96	74	84	66	74	75	79	63
TAAGCTACCACCATTA	ref_2534_RC	75	98	96	86	107	62	108	61	127	77
ATCCATTTCTTGCAGA	ref_2534_RC	6	8	11	5	9	6	6	5	12	3
TCTGGGAGGAGTGGTC	ref_2534_RC	2	9	13	8	16	6	9	4	6	4
CGACCTCCACTTATGG	ref_2534_RC	23	20	21	23	31	14	21	22	13	20
GGCAGCGCCCCAAGGT	ref_2534_RC	19	11	21	13	7	14	11	16	15	15
ATCGACGTTGTCTTCT	ref_2534_RC	9	10	16	12	6	8	8	10	12	15
CCTCGTCCGCTATATC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CACTGGTTATGCCGGT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TCTAGTCCCGGTACAT	ref_2534_RC	13	16	12	9	12	10	12	12	9	7
CTACAGACGTTATCTG	ref_2534_RC	2	2	2	5	11	6	7	3	4	2
CACGTCCCCCTTGTTT	ref_2534_RC	36	74	40	37	86	23	95	33	108	34
ATATGCTGTCACATTC	ref_2534_RC	29	22	33	25	25	19	21	24	26	17
CTGATCGGTCCGCCAT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AAGCAGGCGTATTTGA	ref_2534_RC	104	110	99	93	102	72	142	78	103	83
GTGCTGCCAGGTTTAT	ref_2534_RC	70	83	59	70	64	46	68	63	71	43
TTAGGCCAGGGGCACC	ref_2534_RC	12	28	20	15	12	12	24	21	24	14
CGGACACGGTTCCGCG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTCGCCAGGTGGTGTT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CCGACTTACGTTCGTA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTCGGCGTCACG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTTGTATTTCCCGGTT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GGATTGGAACTGGGGC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TGGCTGACGCCATGCT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CGATGCTAACAATTCC	ref_2534_RC	10	14	16	17	7	8	17	4	11	9
CAAATCGTTCATTCAG	ref_2534_RC	6	6	5	6	11	6	8	6	7	3
CTTCGCCTTCAAGTCT	ref_2534_RC	0	4	1	6	3	2	4	4	1	3
CGTGCAGACTGAACTG	ref_2534_RC	30	39	52	40	58	50	53	44	50	31
TTTGGTAGCTCTGTTA	ref_2534_RC	3	13	9	9	16	4	7	9	8	11
TTAAATTGGTACAGGA	ref_2534_RC	1	2	2	1	1	1	2	1	5	1
TTATTGGTGTAGCCCA	ref_2534_RC	2	1	3	1	5	1	3	2	0	0
GCCGCTCAATATCTAG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
AAACTAGAGCATCGAC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CAGTGTTTGGTCTAGA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTCCGCGTTACATTGT	ref_2534_RC	20	15	8	10	26	10	24	14	34	9
TTGGGGTTGCTTAATC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TACACTTCTAATTTCC	alt_2534_RC	33	46	43	58	40	28	39	33	40	43
GTACGTCGGACAGAGA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTTGTTACTTCC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
ATTTTGCGGCTGATTA	ref_2534_RC	29	43	35	37	37	35	43	38	50	32
AGTGCACTAACATTGT	ref_2534_RC	6	16	6	5	18	5	11	6	11	10
GAGGTGGCCTAGCTTG	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTCGTCACGCTTAGGG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TCTCTTTATTTTGAGC	ref_2534_RC	31	31	31	25	39	20	40	28	34	28
CGTCTGGTGGCATAAA	ref_2534_RC	87	114	110	96	127	83	151	87	143	74
ACCTCTGAATTTCACG	ref_2534_RC	24	35	22	23	21	29	29	24	36	24
GGGTGCCTCCTCGTTT	ref_2534_RC	20	14	16	11	7	7	12	17	11	9
GCTTTTCTTGCACAGT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
CGTCGCCGATTTGGCC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GTCAATTTGGGCAACA	ref_2534_RC	1	0	2	0	2	1	0	4	3	4
CGGCTTAACCGCGCCC	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GGATACCGCAATTCGT	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
GCCATTAGGCGAGTCA	ref_2534_RC	27	25	35	30	36	26	22	22	13	25
CAGGCCCTTCTTATGA	ref_2534_RC	72	42	71	77	75	54	65	54	69	47
TGGGCACAGAGTCTGG	ref_2534_RC	29	25	25	29	16	20	17	19	26	28
TTTTTTTTTGGGTGTT	ref_2534_RC	0	1	0	0	0	0	0	0	0	0
GGAATGCTTCCGTCTG	ref_2534_RC	16	34	39	24	24	23	21	16	30	29
TAGTATTTCTAGAACA	ref_2534_RC	0	0	0	0	0	0	0	0	0	0
TATATGGTTATCGTCA	alt_2534_RC	53	53	62	72	71	39	38	53	47	41
CTCCATGAGTTAGTAC	ref_5828_new	15	21	14	17	26	21	24	13	16	13
TAGTGGAAAACCTGCG	ref_5828_new	83	118	125	85	99	96	113	92	111	83
ACGTGCAGCGGCTCCC	ref_5828_new	71	66	92	74	71	60	63	57	66	50
GACCAGCCATCAGATG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
GGCGATGTGAGTTCTT	ref_5828_new	7	6	4	5	7	5	12	11	8	4
GTGTAAATGTCGGGCT	ref_5828_new	86	69	93	86	69	86	85	63	66	66
AATTATCAGGGGGACG	ref_5828_new	0	1	0	0	0	0	0	0	1	0
GCTTTTGCTCAAGCTT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
GTGCCAACACAAGAAC	ref_5828_new	6	9	9	7	11	15	13	7	7	5
GGTCGATCTATACCTC	ref_5828_new	72	91	93	88	85	76	122	63	110	77
TTAGAATGATCGCGCG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TACGAGAGCAAACCAA	ref_5828_new	4	5	8	3	4	3	8	3	4	2
TTAAGTATGCGTGCCT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
CAGGATTCTCCGTTCG	ref_5828_new	60	40	73	50	40	36	36	33	54	39
TTTATGCGATGGATTC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TGAGTCTTGATGTTAC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TCGAAGTGCGCTGCAT	alt_5828_new	108	90	102	112	95	101	96	92	107	77
GCGAAGGTAGGTAATG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TATGCGACCTAACATC	ref_5828_new	46	32	45	44	41	45	27	37	36	45
TGCTGAGTATTCAATG	ref_5828_new	56	43	64	61	56	64	51	49	52	40
TGGCGCATATAGATAA	ref_5828_new	6	2	1	5	4	4	4	2	5	5
ATATAAAAATTGGAAT	ref_5828_new	12	16	23	29	25	22	48	13	21	17
AGGACATATGTCGTCT	ref_5828_new	81	70	75	64	57	60	62	60	70	51
AACCAGGCCCGTCTTC	ref_5828_new	28	47	28	31	34	30	37	33	60	26
TCTGGACCCTGTCACG	ref_5828_new	3	2	4	1	1	1	2	0	0	2
ACTTGTAATGAGGAAC	ref_5828_new	44	51	58	41	66	48	54	52	54	40
ATTACTACACTCATTC	ref_5828_new	5	8	9	11	10	6	6	7	7	9
GGAAGATCCACGTCCA	ref_5828_new	23	21	34	21	27	13	21	16	19	14
AGCTATTCAATGACAA	ref_5828_new	15	19	24	26	16	17	10	16	10	11
CCGGCCGCTTCGGTTC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TCCTGATTTCTGATCC	ref_5828_new	87	58	84	83	77	88	79	70	70	54
CAAAAATCAGGGACAT	ref_5828_new	47	44	52	43	38	40	46	50	43	50
GATCGCATCCAACGTG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TTCAGGAAGGTTTCGA	alt_5828_new	69	50	75	82	49	71	57	56	62	61
AGGGTTTAGTGACGCC	ref_5828_new	37	60	53	40	44	41	41	42	54	40
GAGTTTGCGGTCGCTT	ref_5828_new	36	40	31	38	23	38	39	29	49	24
CCATCGTGTCTTTCAG	ref_5828_new	3	4	4	6	5	5	4	2	4	2
GAACGCCGGGTTTTTG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TAATAGTATGCCTATC	ref_5828_new	119	107	112	94	85	110	77	86	111	99
CTCCTGATCAGATATA	ref_5828_new	6	14	13	7	14	7	8	13	10	12
CGCCCGGATGCTATAT	ref_5828_new	71	66	76	63	77	57	82	53	70	59
ATGCCCTATATCATCC	ref_5828_new	81	106	123	104	109	80	111	96	107	88
TTGCAGCCACAATATA	ref_5828_new	0	0	0	0	0	0	0	0	0	0
ACGTGGTGACAATCGT	ref_5828_new	41	49	51	31	41	50	47	29	50	44
TTGAACACGGAAAGGC	ref_5828_new	0	1	0	0	0	0	0	0	0	0
TTATCAGTACGGAGGT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TGAGTTCGGTAAGTCT	ref_5828_new	4	4	4	4	9	5	7	5	6	1
GAGGAGCTTCAAGTCA	ref_5828_new	181	142	178	199	147	177	166	155	151	136
GTTATTATGTAATCCA	ref_5828_new	148	135	169	167	138	131	124	115	148	144
CCCCGCGTGACTTATT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
AACAGCGGATGGTGAC	ref_5828_new	333	357	425	372	358	381	369	310	414	277
TGATTTAGAGCCCATG	ref_5828_new	3	6	5	2	10	3	12	2	7	6
TGTACCAAAGCTCGTT	ref_5828_new	109	110	121	102	121	92	123	91	125	92
CAACGATCCTCAGGCA	ref_5828_new	20	42	25	32	38	25	37	31	34	24
ATTAAGATAATTTGTT	ref_5828_new	15	7	9	8	7	7	8	4	6	7
GGCTTGATATATCCCA	ref_5828_new	15	19	16	14	18	13	18	15	21	20
CGAGCAATTTTCGTTC	ref_5828_new	22	21	31	26	31	12	36	21	29	22
TTTCGATTCCTGGTAG	ref_5828_new	25	27	24	23	19	18	17	19	24	15
AAGCCCAGTTCGGTGT	ref_5828_new	83	105	102	73	115	61	129	72	103	71
ACGAGGTGATATAGAG	ref_5828_new	13	19	22	23	22	28	21	9	25	14
ACGTCCGGATTCCTAC	ref_5828_new	17	24	28	18	14	14	28	13	24	17
TCATGAGTTCTATAGG	ref_5828_new	128	121	148	113	123	110	158	129	165	103
TTTTTCCAGAACTGTA	ref_5828_new	9	9	7	10	15	8	11	8	14	5
TATGTTCTTTACTTCC	ref_5828_new	0	9	9	5	7	5	3	9	6	5
AATGGTCCCCGTTAAT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
GACTAACCGTTGAGGT	ref_5828_new	4	2	6	4	2	4	6	4	6	2
TAAAGATTTAGCACAG	ref_5828_new	38	31	44	50	34	60	43	41	55	25
ACCCTCAAACCCAGTA	ref_5828_new	12	11	32	29	20	16	13	15	9	14
ATTAGGCCTACTCCCT	ref_5828_new	1	1	1	1	0	0	3	0	4	0
GGCAACCTTCGTGCAA	ref_5828_new	40	22	39	31	31	25	28	33	33	31
TGTACTACAATTCTCA	ref_5828_new	71	56	81	73	59	61	59	83	65	54
TCAGAGAGCGGATCCA	ref_5828_new	58	46	70	53	54	63	64	49	56	54
ATTCTTCCATCAATGT	ref_5828_new	26	23	31	23	21	17	19	33	18	9
TCATTAACGGGTCAAG	ref_5828_new	36	39	43	35	33	29	34	25	33	20
TTCCCGGACGTTGAAG	ref_5828_new	113	134	171	132	130	110	126	125	115	98
TAGCGCATATAGATAA	ref_5828_new	11	14	16	15	9	11	14	13	13	16
TACCGCCCGGACAATG	ref_5828_new	36	44	49	47	46	39	44	38	50	48
ATATGTCACTGGCTTA	ref_5828_new	0	0	0	0	0	0	0	0	0	0
CGAGGGCATGTTATTT	ref_5828_new	40	46	45	48	45	34	44	39	51	42
GGTGTTACTGGAACCA	ref_5828_new	0	0	0	0	0	0	0	0	0	0
CTTGGATCTGTTTCAT	ref_5828_new	60	50	65	54	61	29	64	44	52	45
TCTTTTCGTAGGGCAC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
GTATGGCTGGGTCGGA	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TGCGAATCCGTATCTG	alt_5828_new	128	146	150	152	126	100	161	137	170	120
CGAGCTGCCATAGTTG	ref_5828_new	39	36	53	42	30	45	45	42	29	37
TATCAATGTGGAGGTT	ref_5828_new	57	54	61	57	36	47	44	43	74	39
GTATTTGGCACCAATT	ref_5828_new	54	80	85	78	56	64	53	50	64	57
ACAAGCGTAGTCGGGT	ref_5828_new	14	11	18	12	22	12	17	8	23	13
TTCTGTTCGTCTAATT	ref_5828_new	8	9	19	11	12	14	8	11	16	14
GTCTGTTTCGGGGCAA	ref_5828_new	5	4	6	10	7	4	4	6	9	6
TCTTTCGTGAGTTTTC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TTATCCACCCCGACTG	ref_5828_new	32	61	69	55	50	38	51	31	71	36
GTGTGACTCCGCCAAT	ref_5828_new	68	65	67	69	72	71	68	55	72	52
ATTTTTAGCATCGTCA	ref_5828_new	30	28	35	29	37	18	32	25	26	20
TCCATCCGCTAATACT	ref_5828_new	12	17	10	16	16	8	12	7	16	3
CGTGTGTAACGATGAT	ref_5828_new	5	13	12	8	7	9	14	9	7	5
GCTCGGAATCCCGGTT	alt_5828_new	34	43	51	45	47	34	44	33	47	41
AAACGTCGAATATGTC	ref_5828_new	54	70	83	75	82	47	64	54	54	47
ATTGCCGCTAACAAGT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TTATGACATCGGTAGA	ref_5828_new	81	81	84	73	76	65	69	49	73	64
CGCCGCCCTTCAGAGC	ref_5828_new	138	109	185	131	112	120	128	105	120	118
AGCATTGGCTAGTCAT	ref_5828_new	65	81	85	75	103	84	81	57	98	72
TCGCTCCAATGTTGCA	ref_5828_new	10	25	16	16	16	10	26	15	14	18
AGGAGATGATTTTTGG	ref_5828_new	61	71	96	74	79	65	87	65	93	71
TTCGGAACCCCAAAAC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
ATGTCAATCGCACGAC	ref_5828_new	94	100	144	142	122	107	115	89	120	98
TATTTCAATGTAGTTC	ref_5828_new	34	37	43	28	40	41	40	21	43	30
CAAATTCTGTTCCCAG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TGGCGTGCTGCAGTAA	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TCGTAGGCAATTAGAC	alt_5828_new	62	51	56	70	47	49	56	36	56	40
GAATGGTCGTACAGGC	ref_5828_new	26	23	32	19	13	10	10	14	12	17
CTCAATCTTATATTGC	ref_5828_new	19	38	29	28	32	10	46	15	33	17
AATTGTCTTGCGGTGC	ref_5828_new	12	19	9	13	18	18	20	14	15	10
TCCATGTCCGTTATAG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
CTCTACGGGATTCTAA	ref_5828_new	24	21	24	21	29	15	38	24	20	13
ATGTGGGCAGTCTTCT	ref_5828_new	252	270	289	277	309	253	295	252	290	228
GGGATAGAATGTCACT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
GCAAAATCCAAGTCGG	ref_5828_new	0	0	0	0	0	0	0	0	0	0
CTAAACCTCGGTTTTA	ref_5828_new	19	23	18	22	19	12	25	23	20	14
GCCGCCTTTATAGTAT	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TTCCGCATCCCATGAT	ref_5828_new	7	13	20	19	21	15	20	14	13	14
GTAGTGCATATCAGGA	ref_5828_new	9	6	14	8	11	8	11	5	9	6
TATAATTCGCTGGTTG	ref_5828_new	15	13	8	13	13	9	7	3	14	12
CTTTTTTCTAGGTTAC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TCATTGGCAGAGCCAA	ref_5828_new	0	0	0	0	0	0	0	0	0	0
GGGGTACCCGTTCCGC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TCAACATGACCAGCGC	ref_5828_new	35	40	46	32	47	37	47	29	42	30
GCTCGTCACCTAAAGT	ref_5828_new	37	40	46	47	47	32	42	41	39	39
ACACTGGGACGTACCC	ref_5828_new	35	32	44	15	27	27	34	23	44	21
GGGATCTTGGGTAAGA	ref_5828_new	198	203	271	200	205	209	231	226	227	201
GCTTTTAAAGCGTGTT	ref_5828_new	3	2	2	9	5	1	3	3	3	2
TTCTGTGACACTCCTT	ref_5828_new	3	2	1	0	1	0	1	3	3	2
GCCTCAGCGGTAAGTG	ref_5828_new	14	13	14	12	16	13	15	6	15	9
AACGCTGAGGTATAGT	ref_5828_new	12	9	24	10	10	17	11	10	16	7
GCGCGTCAAGTAAGAA	ref_5828_new	41	52	56	60	55	23	47	38	49	46
GTCCCGGAGTGCCGAC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
GTGCTGATGTTTCGTA	ref_5828_new	45	40	34	38	34	34	39	42	42	30
ACGTCTATGACTAACT	ref_5828_new	33	40	30	30	29	37	47	31	50	35
GGACGAGAATAGAACC	ref_5828_new	22	27	28	20	34	26	21	19	22	25
CAACCAGCCCCTTGTC	ref_5828_new	0	0	0	0	0	0	0	0	0	0
TGTTTACGCTTATTCG	ref_5828_new	37	44	54	46	73	56	58	76	57	61
CGTTTGTAGAGTAAAC	ref_5828_new	18	15	17	21	16	22	20	16	28	5
AACTCGCCTTGATCCC	alt_3478_fdr	28	32	27	21	35	25	30	21	45	21
TAGTAGAAAATGTCAG	alt_3478_fdr	35	40	41	22	25	25	46	27	46	33
AGTCACTGCAGGTTCG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
TTCCATGCAATGCGTT	alt_3478_fdr	5	11	11	14	18	11	21	12	23	12
CAGAAGCACCCTGAGG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGCGAGTCAACCC	alt_3478_fdr	41	45	52	58	80	49	44	42	59	44
ATAGGGGCATCGACAT	alt_3478_fdr	8	8	7	3	6	1	8	10	5	3
TTGCACGCGTACGCAG	alt_3478_fdr	16	22	17	12	15	6	22	15	28	5
GTTTTTCTATTATGTA	alt_3478_fdr	19	27	25	20	24	20	42	11	22	26
CGTTCCGCTGTATATC	alt_3478_fdr	39	48	49	47	48	31	43	34	41	35
GCGTAATCAGCTATTC	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTGTAACAGGCGC	alt_3478_fdr	22	37	26	30	29	20	29	23	30	17
GTTATTATCCTACCTC	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
AACTCAGCTGCCCTGT	ref_3478_fdr	42	48	46	41	62	47	65	35	62	32
CAAGTTGGCGGCCCGT	alt_3478_fdr	1	0	0	0	0	0	0	1	0	0
GTATACGGGCAAGTGA	alt_3478_fdr	11	17	8	7	10	5	14	5	12	5
GTCGTGCTTTTTGTTA	alt_3478_fdr	9	11	11	8	16	7	9	10	17	7
GATAATTCTCAAAAGG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
GAGACCTCCGGAATGA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CTATGCCGTTCAGTCT	alt_3478_fdr	9	20	11	8	10	8	21	9	22	4
ATTGTGAAAATTCCGT	alt_3478_fdr	10	13	20	16	20	10	8	15	19	15
TTCCGTCATTCGCCCC	alt_3478_fdr	74	97	94	93	85	69	74	93	92	64
GCCCTTATAGCAACTA	alt_3478_fdr	0	0	1	1	0	0	0	0	0	0
TGTCAAGGAGGTATAA	alt_3478_fdr	18	20	26	22	34	11	17	13	29	22
GATAGTGGCCCTAGCT	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCCCAGTTAACTA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCTTCAGCCCTCG	alt_3478_fdr	67	102	88	103	101	80	87	75	102	68
GTCACTCGTTTCCTCG	alt_3478_fdr	35	64	35	52	73	30	79	38	99	26
GTCACCATTTCGTGAC	alt_3478_fdr	3	10	2	9	10	9	9	9	14	5
CATCCCATCTGCGGCC	alt_3478_fdr	12	12	19	21	11	7	13	18	17	7
TTTAATCGTTCTTCGT	alt_3478_fdr	30	27	38	26	41	29	40	20	40	24
AACCATGTGAGTTTGG	alt_3478_fdr	35	72	34	44	53	34	66	37	68	40
TGGCGCTTTTCAATTT	alt_3478_fdr	58	62	63	51	56	52	53	54	62	33
ATTCGTCCAGGGCTTT	alt_3478_fdr	51	47	67	37	52	50	75	25	62	47
TTTGTTCGTTTCCGTT	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGTTGCTCCTTAC	alt_3478_fdr	291	364	336	319	385	258	439	222	442	264
CGCGACGCTTGAATTG	alt_3478_fdr	33	40	39	33	43	31	46	30	34	35
GGGACCATAGTCTGGG	ref_3478_fdr	12	17	24	18	18	14	18	12	14	19
AGCAGACGTGTTAGCC	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
TTACGGAGCCAATCTT	alt_3478_fdr	33	36	31	33	36	26	32	32	45	27
GGCAGCCGGTGCATAT	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTTTTATGTGATG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
ATTGGCTTTGTGTGGT	alt_3478_fdr	26	55	50	27	42	38	38	20	47	37
TTATTCACCTTATCCT	alt_3478_fdr	81	121	99	83	110	75	116	74	115	77
TTGTGAGTTCTTCGCG	alt_3478_fdr	1	0	0	0	0	0	0	0	0	0
CGCAACCGGCCAGTCG	alt_3478_fdr	8	17	10	4	11	3	14	5	9	4
CACTGACCTCTGCAAC	alt_3478_fdr	15	30	16	9	12	19	17	6	22	13
ATTAGGTTGTGTGACC	alt_3478_fdr	22	43	33	32	36	31	45	27	53	28
CTAGTTGTTCTTCCTC	alt_3478_fdr	8	13	9	7	5	7	2	6	18	4
TCAATTTTTCTCGTGA	alt_3478_fdr	16	28	22	19	28	17	33	13	23	20
CCTGCCGGTATGTATC	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
ACACTACCTTGACCTG	alt_3478_fdr	36	54	56	38	57	27	49	27	49	26
CCGCCTGTACACGGTG	alt_3478_fdr	14	16	19	9	18	5	21	12	24	3
TATGCCTTAAGTCTAG	alt_3478_fdr	8	16	21	6	19	18	15	11	16	14
TAGATCGTTACACTGC	alt_3478_fdr	49	82	70	53	82	62	60	41	73	56
TTTACTTTCCTCATCT	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGAGTGTAGTGCG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CTACTAATGGACGTAA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CGAGGGCCTAATCCAA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTATCCCGATCGGCAC	alt_3478_fdr	22	42	31	30	30	25	29	21	41	23
CTAAATTTTTGGGTGT	alt_3478_fdr	23	22	33	21	25	19	25	25	32	15
TCTTTGCCCATTGCTT	alt_3478_fdr	39	28	32	23	31	23	36	33	40	18
GACCTGCCCCCTCTAC	ref_3478_fdr	26	45	33	21	36	23	68	25	27	17
TTTTCGACACCGAGCT	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCTCGATCCAGG	alt_3478_fdr	3	4	10	6	2	1	5	5	8	2
TCTTCACAATCATTAG	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GCCATTATAGCAACTA	alt_3478_fdr	0	0	1	0	0	0	0	0	0	0
CCAAGAGTAAGTAGAA	ref_3478_fdr	44	87	54	61	93	57	90	54	97	43
ACTACTTACCATGTTC	alt_3478_fdr	0	2	0	0	1	0	1	0	1	0
CACAATTATCCCCTAT	alt_3478_fdr	88	118	131	94	124	72	124	102	145	103
TGCGGGGTTCAGGGTG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTTACAAAAATTA	alt_3478_fdr	30	40	26	25	21	18	34	24	41	21
ATCACGACGAGTACTT	alt_3478_fdr	9	9	13	10	10	7	15	8	8	10
TTAGGGTACCCTGTTG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGGATGCTTAGGC	alt_3478_fdr	23	30	18	11	20	7	29	12	33	7
CTCGTTAAACCCTGCC	ref_3478_fdr	142	191	145	164	210	134	179	138	202	135
CTAGAGGCTTATTCTC	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
TACGGTGCATCAAGTG	alt_3478_fdr	0	8	6	5	2	3	7	3	11	1
AACCATCTCTCCTCCA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CATAATATTACAACGC	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
AAACTCGCATGTTCTC	alt_3478_fdr	5	8	5	2	6	7	5	7	6	1
GATGTTCTGGGGCGAT	alt_3478_fdr	29	28	38	20	27	34	34	29	36	22
TTAATCCTGTAAGCCA	alt_3478_fdr	90	90	103	73	122	84	101	64	115	74
GGTCAAATTATGTCCA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CAATATGTCCATTCGT	ref_3478_fdr	39	57	44	28	44	42	57	30	50	27
CCATTTTTCCCCTGTT	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTTATGGTCTAAGTTA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
CTGGACAGTTGGTCTG	ref_3478_fdr	50	71	58	49	52	42	56	36	57	43
CCTACATGTCCAGCGT	alt_3478_fdr	18	45	29	31	47	23	44	18	50	27
TTGATACTGGTGCAAA	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
GGCATTTAGCACCTGG	alt_3478_fdr	1	2	2	6	10	6	7	10	9	4
TTCCGGCTAGTGTGTT	alt_3478_fdr	16	20	16	30	30	14	36	11	25	24
GCCTTTATAGCAACTA	alt_3478_fdr	400	501	485	415	494	360	470	366	512	331
TTTGTCCCTGGACTAC	alt_3478_fdr	19	31	21	17	19	15	29	15	23	14
TTGTTGGTACATTGGG	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCAGAATCCCCCC	alt_3478_fdr	6	9	10	3	7	7	15	4	2	8
CTTCTGGAACACCCTA	alt_3478_fdr	21	22	14	17	23	13	14	13	31	6
AATGCCCATGTGCCAG	alt_3478_fdr	19	22	14	18	20	22	23	16	29	11
TAACCCCCATACACTT	alt_3478_fdr	41	30	50	36	47	32	50	19	53	43
GCGGTTGAGCTGCCTC	alt_3478_fdr	18	28	21	15	31	20	30	14	19	16
GCCTTTAAAGCAACTA	alt_3478_fdr	0	1	0	0	0	0	0	0	0	0
TTTAGCGTCGGTAGTG	alt_3478_fdr	65	76	71	71	107	53	106	56	110	60
TAGCTCCCTCGTAGTT	alt_3478_fdr	18	28	14	11	25	9	36	10	42	8
AACCGTCAGGTCCCCA	alt_3478_fdr	3	4	4	3	2	1	3	3	1	2
TGGTGTGTCTAAATTT	alt_3478_fdr	28	68	44	30	55	31	45	25	58	23
TAACATTTGCCGTCTA	alt_3478_fdr	2	3	0	2	1	0	1	3	3	3
CGTTATGCCATGCTGC	alt_3478_fdr	0	0	0	0	0	0	0	0	0	0
TATTGTGGGTTATTTT	alt_3478_fdr	10	14	21	10	19	12	17	9	31	16
GGCGGGATCTTACGCC	alt_3478_fdr	18	33	28	32	32	16	24	27	32	15
CCGGTATCCCACGCCC	alt_3478_fdr	10	23	5	8	23	7	17	12	22	11
ACAGAGCACAAGCATC	alt_3478_fdr	104	140	122	139	124	111	164	94	144	97
TGGATATTCCATAAGT	ref_6097_new	20	40	25	16	23	12	29	9	29	16
TTGTGCTTATGTCGAC	ref_6097_new	2	2	2	5	0	4	6	6	5	2
AGGACGGATGGTTGCA	ref_6097_new	0	0	1	0	3	1	1	5	3	2
CCAGGCATTCATGACG	ref_6097_new	2	4	2	0	3	4	2	0	3	4
TTCAACTACGTACGGG	ref_6097_new	55	63	74	66	88	40	64	53	87	53
CTTCGTGATTAAAGGC	ref_6097_new	12	22	15	10	8	11	16	9	10	9
CTTTCATCGAGCGTAC	ref_6097_new	47	91	63	49	75	50	93	43	96	46
TCCGTAGCCCCTACTA	ref_6097_new	9	16	10	5	11	8	14	10	16	9
AATACGCCTCAGGAGT	ref_6097_new	164	216	209	169	236	175	245	156	249	139
GAAGATTAATTTCTTG	ref_6097_new	13	10	12	10	17	6	13	8	5	9
TTCAGCTTCGACATAC	ref_6097_new	17	26	15	10	29	12	37	12	28	7
ACCGTGAAGTGCGCGG	ref_6097_new	56	70	43	39	71	38	57	36	60	27
GTTTCGTATGTTTATG	ref_6097_new	23	35	37	38	36	25	37	16	39	15
TTGGATCCCTTTGTCT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
ATTATTCTTCTTTTGT	alt_6097_new	246	280	332	248	317	255	299	294	334	222
TTTACCTTGAATCGCA	ref_6097_new	11	25	10	6	23	9	25	13	16	10
ACTCTGTATCTGTCTT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
ATATCTTGGATGCATC	ref_6097_new	54	79	80	58	86	58	87	56	88	68
GCGTTTACACTGGGAT	ref_6097_new	20	19	18	13	32	12	36	13	34	10
TGTGTTTTGTTTGTCC	alt_6097_new	97	119	142	134	129	138	150	108	151	118
GTCACGTACAGTTCCG	ref_6097_new	47	57	72	64	78	43	44	55	65	51
TACCGTCTGCGTGTAA	ref_6097_new	3	7	8	10	8	6	13	5	6	4
GGTGTTGCGTGCTTTG	ref_6097_new	10	7	14	8	14	9	15	8	13	5
ACATTTGTTAAGGCTA	ref_6097_new	55	95	58	67	93	64	85	39	80	69
AGGACTCAAAGAGCTC	ref_6097_new	0	0	0	0	0	0	0	0	0	0
GGCATGTTCCATCCGA	ref_6097_new	0	0	0	0	0	0	0	0	0	0
TAGGTAGAAGTCCCAT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
GGAAACTCTTCATTCG	ref_6097_new	2	7	6	3	9	6	19	4	4	5
GTTTCTTGACTTCTTG	ref_6097_new	11	16	11	12	17	8	25	8	17	6
GTCTTGTTGGTACTCA	ref_6097_new	13	12	12	20	16	12	21	18	19	12
CCGTTTCTCAGCGCCT	ref_6097_new	8	9	4	9	6	4	7	2	7	7
CAGGATTGCACACGAC	alt_6097_new	91	148	111	72	137	90	197	103	125	79
TCCTTACCGGCTTGTA	ref_6097_new	5	10	4	6	15	3	16	3	13	5
TAACTTCTCGTGGGAA	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CTATCTTCTCCTCTCA	ref_6097_new	0	0	0	0	0	0	0	0	0	0
TATGTGCTGCGGGGGG	ref_6097_new	19	21	18	17	14	23	34	26	35	24
GTGTAGGGAGCGTTCG	ref_6097_new	56	77	87	67	92	67	88	65	84	56
ACCTTTTGCTTGCGTT	alt_6097_new	29	50	38	25	58	23	52	25	54	20
ATGTAGATTCTTGTCT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
AATGCTTAGGAAATAC	ref_6097_new	14	14	13	10	22	13	31	16	24	9
GGCCGTTCCGCAACGA	ref_6097_new	12	8	11	13	18	6	9	14	10	14
TAATCATGGGGCATGA	ref_6097_new	9	7	8	6	10	13	12	9	16	7
TCAGGATACAACCGAT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CTATTTGCGTCATCTT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CCGGAAATAAGTTCAT	ref_6097_new	45	66	38	50	58	42	59	34	62	43
TAGTGGTCAACCGTGC	ref_6097_new	1	11	3	3	12	1	13	1	4	2
GTCACGCATCCTTTTG	ref_6097_new	23	30	25	20	15	23	38	31	34	14
GTTATAGTGACGTTTC	ref_6097_new	0	0	0	0	0	0	0	0	0	0
TTGGAGCAACGCATTT	ref_6097_new	18	32	21	23	26	17	32	9	17	22
GATGTTTACTCGCTTA	ref_6097_new	0	0	0	0	0	0	0	0	0	0
GTCGTCTTGGTAAGGG	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CACCACATCCGTAACT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
AAGCCACACTCTCATT	ref_6097_new	25	45	31	26	35	33	43	35	38	29
CGTAGGATTGGCCAGC	ref_6097_new	23	32	26	18	22	22	35	9	31	10
AACTCCCTATCACTTC	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CTGTATTGTGCTTATC	alt_6097_new	93	136	112	89	104	114	129	76	132	82
ATCCCGACCCGGTTTG	ref_6097_new	13	28	20	20	33	16	36	11	27	16
AGTTGCTCTGAGCGTT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
AGGCGAATCGTATTCG	ref_6097_new	10	23	18	15	31	14	19	10	24	8
ACTCTTGCTCTATGAT	ref_6097_new	8	9	6	8	10	3	6	5	5	5
ATCATAGCGGAGCTCG	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CACCTCAGTTATCATT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
GAGTCTCTATCTGCTA	ref_6097_new	17	27	19	20	34	17	29	21	34	22
CACTGTCTCCTGTAAT	ref_6097_new	5	13	11	6	10	4	15	9	19	2
TACATCGTACTTTTGA	ref_6097_new	0	0	0	0	0	0	0	0	0	0
TAGGCTTTCTATGGGG	ref_6097_new	47	40	36	32	47	36	41	28	47	39
TATCGCTAAGACCAGT	ref_6097_new	9	16	9	18	9	9	10	11	26	9
GTTCGGCTGTCAGTAC	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CATTTGATGGCCCACG	ref_6097_new	1	1	0	0	1	0	2	2	2	3
AGGGAGCACCCTCTTC	ref_6097_new	0	0	0	0	0	0	0	0	0	0
AGCGCGTTCACTTTTG	ref_6097_new	0	0	0	0	0	0	0	0	0	0
TGGAGTTCGAGATACT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
GGTACCGCTTCACCAC	ref_6097_new	0	0	0	0	0	0	0	0	0	0
AGGTTCCCCTATCCTA	ref_6097_new	9	7	7	9	12	17	21	9	10	4
GAGTATTCGCGACTCT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
ATTTTCTTGGACATTA	alt_6097_new	13	26	23	16	21	11	22	29	31	18
GGAGTCAACATACTTT	ref_6097_new	2	3	7	4	4	1	8	9	8	6
TCTAATAATCTTGCGG	ref_6097_new	11	21	16	8	16	15	19	17	16	16
AAGACCCCCGCGGACC	ref_6097_new	20	26	14	21	33	10	29	12	37	18
AAATCTATCAATCTAG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TGGCGCGAGTACCACC	ref_6097_new	11	14	13	15	22	13	14	6	20	12
CTATCTTAATGCTACG	ref_6097_new	0	0	0	0	0	0	0	0	0	0
TGGCCTAGGGCTGGTT	ref_6097_new	2	2	2	1	4	0	5	0	3	0
TAATTGAGGTTTGGAG	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CCGTTTTTTAGTTTCC	ref_6097_new	101	110	94	88	132	72	167	77	134	64
TCCGGTATTTATATCC	ref_6097_new	22	26	13	14	18	14	21	10	28	9
CACGCCAGAATACCCC	ref_6097_new	8	15	6	8	11	8	9	5	4	4
TTCCTTTTACTTAGTT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
CCGCCTTATCTCTGGT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
TCTTGCAGCCCGGCTT	ref_6097_new	10	18	21	12	24	13	17	10	11	10
ACCCATGCATATACGT	ref_6097_new	0	0	0	0	0	0	0	0	0	0
ACAGGTGCCCTTCCCC	ref_6097_new	13	25	12	21	30	13	18	17	18	14
ACTGGTTCCTCATTCG	ref_6097_new	31	22	27	31	31	30	30	20	32	15
CTCGTATGGCCCTAAC	ref_6097_new	22	29	22	18	33	14	26	24	25	20
CGGTGGTAACAATGCC	ref_6097_new	49	43	47	43	51	26	50	35	47	32
TCCGCATGGGTCTCGG	ref_6097_new	10	15	19	22	15	25	22	14	14	14
CCCGTGTGCAATACGT	alt_5865_new	8	19	6	9	15	6	21	7	19	8
TGAGTCCCCGAGCTAC	alt_5865_new	12	13	13	3	5	8	8	9	11	5
GCAACACAGCTTAGGG	alt_5865_new	14	11	17	8	13	8	6	7	15	6
TGAATCCGAGCGTCTG	alt_5865_new	14	17	21	14	16	10	15	9	13	18
TACGTCGGAGCGGTCG	alt_5865_new	21	37	25	23	31	30	52	27	41	16
CAATACAGGTAAGATG	alt_5865_new	6	14	10	4	4	6	12	8	10	9
CTTATCCTCGGCGAGT	alt_5865_new	70	83	86	77	88	78	73	71	103	72
TTTGTTCTGTGAAAAC	alt_5865_new	44	64	46	42	36	48	45	24	56	42
AAATTTGTGGAACTAG	alt_5865_new	32	39	25	35	32	27	37	16	50	32
CGTTAATTAAAACCCG	alt_5865_new	0	0	0	0	0	0	0	0	0	0
CGTTATCGCAATGCAT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
CGAAATATTGACTATT	alt_5865_new	6	5	1	2	2	3	2	4	4	2
ACACCCTATATGAACA	alt_5865_new	9	6	8	5	4	9	11	8	10	4
ACCTAGCGATGGGATA	alt_5865_new	10	30	14	17	33	8	27	9	35	15
TATATGGTGTGGATAT	alt_5865_new	0	3	2	3	1	1	1	2	6	2
GAGGTAATTTCCTGGC	alt_5865_new	78	58	78	78	52	62	70	52	61	75
CAGTATCTTGGTGTTT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
CACACATTGTTGCCTA	alt_5865_new	1	3	2	1	3	2	7	0	4	1
TACCCCTGCTAAGCCT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
AAGTTCATTAACTGTT	alt_5865_new	1	6	6	7	5	7	5	2	3	6
CTAGTGTGCGTTGTAT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
TCAGCTTTCCGTTCGT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
GCTAACTCTCACCCGC	alt_5865_new	223	221	234	187	229	206	250	196	247	172
TCCAAATTCAAGGTAC	alt_5865_new	0	9	3	4	5	1	9	1	4	6
ACCCCTTTAGGGCTCA	alt_5865_new	38	80	44	48	73	33	83	37	78	35
CCATCAGGGTTGGCTT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
CCTATTGGTGTGACTG	alt_5865_new	33	47	45	33	43	39	52	43	65	31
CGATTATCAGAATTTA	alt_5865_new	0	0	0	0	0	0	0	0	0	0
GTTCGATTAGGGAGAC	alt_5865_new	6	10	11	6	9	11	15	10	13	7
ATGTGAGGGGGACTCG	alt_5865_new	18	24	33	15	19	14	34	14	22	15
TGGGGAAACCTCATGT	alt_5865_new	55	76	70	64	73	59	74	60	82	48
ACTTGTCCGATAACAA	alt_5865_new	30	50	39	27	61	26	55	24	65	33
TTGGGACCCGGGCTTA	alt_5865_new	52	46	40	45	49	37	47	31	47	30
TTTAGGTTCTATTATT	alt_5865_new	7	7	4	5	10	7	6	1	7	3
ACGTGGTATGTATCTT	alt_5865_new	3	12	11	6	6	4	9	5	13	6
CCCTTGAACATTTTGA	alt_5865_new	2	1	0	4	2	0	2	0	1	0
CAATACAGGTGAGATG	alt_5865_new	2	1	4	1	0	1	1	0	0	1
CTGGGAAATTCCCGGT	alt_5865_new	20	27	17	17	19	18	24	23	22	12
CTTGCGATTTTGCGTT	alt_5865_new	60	72	86	72	75	64	62	62	91	53
GTACTGTAGCGCATCC	alt_5865_new	2	0	5	3	1	1	5	1	5	6
CCTTCATATTGCGCGT	alt_5865_new	19	15	24	15	28	12	22	22	24	18
TGGCTACTCGGGTATC	alt_5865_new	23	28	23	22	33	20	24	20	19	17
TAAAGAGAATTATAAG	alt_5865_new	19	22	20	15	17	14	26	11	24	13
TAATTGATTGAGTGGA	alt_5865_new	158	180	201	164	217	142	203	168	214	146
CCCTAGCTGCTTAGTA	alt_5865_new	0	0	0	0	0	0	0	0	0	0
CGGGTTTCACTAGATT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
ATTGACGTTGCAGGGT	alt_5865_new	91	94	101	84	89	80	105	70	112	60
CATAGAAAGATCCAGA	alt_5865_new	0	0	0	0	0	0	0	0	0	0
TTAATGAAGACTTTCC	alt_5865_new	28	22	30	32	59	30	41	26	34	22
TCTCTTCCCTTCTGTT	alt_5865_new	29	15	27	25	18	16	19	22	13	17
CTCGGCGCACACTTTC	alt_5865_new	0	0	0	0	0	0	0	0	0	0
GCATCCCAATGGTTTT	alt_5865_new	27	27	22	18	24	14	32	24	24	25
GTTCAGTAACCCTGTC	alt_5865_new	0	4	4	4	4	1	5	2	5	1
GGACTCGTCCCCCATT	alt_5865_new	19	30	31	25	15	17	29	21	18	19
GTATCTCGCCGGACGG	alt_5865_new	14	3	12	4	14	7	11	7	14	10
TTGGGCGGCTACCTAG	alt_5865_new	11	25	21	17	22	11	19	14	19	12
CAACTTAGGGTGGTAC	alt_5865_new	0	0	0	0	0	0	0	0	0	0
GTGTCCGCCGGTTTTA	alt_5865_new	70	70	90	55	86	86	79	54	87	47
ATTAATGCTTCGACGC	alt_5865_new	0	0	0	0	0	0	0	0	0	0
TTGCCGTGCCCACGGT	alt_5865_new	72	87	63	62	56	64	78	60	78	64
CTCGGTCGTTCTTGTG	alt_5865_new	11	37	10	14	37	13	49	11	43	6
GATCCTTGCCACGTCG	alt_5865_new	48	56	52	48	51	34	41	36	49	35
CGTTTATATCACGATA	alt_5865_new	124	140	136	131	175	121	139	115	156	104
TCAGGGCCCAGCACCG	alt_5865_new	40	39	63	52	38	38	63	42	66	40
ATTAGCATGTCCCTGT	alt_5865_new	6	0	6	3	12	2	7	12	2	3
TCTCGTGTTGTCCCTT	alt_5865_new	41	56	55	46	54	31	53	38	47	51
GATTTGATGTGCACGT	alt_5865_new	0	0	0	0	0	0	0	0	0	0
ACGTTCTTATCCGGGT	alt_5865_new	54	46	65	54	68	61	90	59	65	44
TAGCTCTCCCGTGTGG	alt_5865_new	28	27	21	28	29	27	42	29	38	26
TGGTTTGACATTATCT	alt_5865_new	30	46	43	34	42	29	36	30	38	26
ATAACACACTCGGGGA	alt_5865_new	33	39	46	46	37	30	32	33	43	38
ACATTTCCACAATTCC	alt_5865_new	29	31	26	13	26	24	20	15	31	28
ATTAGTTGGTCCCCAG	alt_5865_new	0	0	0	0	0	0	0	0	0	0
ACATACTCCCTTTGTC	alt_5865_new	4	4	0	0	3	1	1	1	3	0
CCTTTGGTATCTGAGT	alt_5865_new	11	15	18	14	19	16	20	11	22	15
AAGCCTAAGGTGCTCA	ref_3943_fdr	7	17	13	15	37	23	35	12	33	11
TATTCGGTATTGGTAT	ref_3943_fdr	50	61	41	40	49	37	55	16	71	23
GCCGCTTTTGCGGCGT	ref_3943_fdr	28	43	34	16	37	26	47	15	42	34
CGGAGATTCGTTATAC	ref_3943_fdr	60	102	66	71	117	58	102	59	144	57
ACCCGCCCCAGCCTGT	ref_3943_fdr	34	55	40	45	43	44	58	25	41	30
CTAAACGCTTCATATA	ref_3943_fdr	25	48	26	20	38	27	52	16	42	21
TCTTAGGTGTTGCCTG	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TGCAGCAAGCACTAGA	ref_3943_fdr	19	40	22	28	50	20	32	25	50	20
TCTTTCGGTAATTCGA	ref_3943_fdr	22	35	15	31	27	15	30	11	37	13
TTCGCGACTACAAGGC	ref_3943_fdr	41	73	46	38	62	25	59	24	71	43
CTAACTCGACTGCTGT	ref_3943_fdr	24	53	36	26	46	26	33	36	61	35
TTTACCACGAGCTTAG	alt_3943_fdr	16	14	13	14	19	18	23	11	26	21
TTAACTCCGCACATGC	alt_3943_fdr	47	101	95	49	82	59	97	75	121	44
TTACTCCTTTGTCCGA	ref_3943_fdr	7	11	7	11	23	11	18	8	9	11
ACCGATTTCTAAACTG	alt_3943_fdr	65	78	83	67	85	77	89	69	70	61
CAGCGGTTAAGGGATC	ref_3943_fdr	49	82	43	44	96	43	121	47	117	53
ATAACGGGTTCCGTCT	ref_3943_fdr	19	34	40	22	41	24	31	20	41	15
GTCCCTCTATATTGAA	ref_3943_fdr	12	31	15	20	36	15	20	14	26	16
CGTATATTCGATTTTA	alt_3943_fdr	4	8	8	6	3	6	4	2	9	2
TCGCCGCTCAGGGTTT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAATTGAGTGCAC	ref_3943_fdr	33	72	65	46	69	46	91	70	83	47
ATCCAGATCGCCAGGA	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTACGGCGATAT	ref_3943_fdr	10	16	6	16	15	3	14	6	7	3
TAGCGCGCTCCTGGGG	ref_3943_fdr	160	234	196	141	226	136	226	152	214	137
AGAGTAAGCTAGCCTT	ref_3943_fdr	86	154	115	75	156	75	161	67	146	67
AAAACCTCCCCAAGCC	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TCTCACTTTATCGTTT	ref_3943_fdr	28	77	36	22	57	37	57	32	71	25
CAAGTCAACTATTGTT	alt_3943_fdr	94	223	106	119	226	99	254	74	215	66
AGCTCTTGCTTTTTCT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TACCAAACCGGCTCCA	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATTTGTAGCATC	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GAGACCGTATTAATGT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GCTACTCTATTGTGGG	ref_3943_fdr	9	16	9	8	9	6	19	8	24	9
TATCTGGGGCATATAG	ref_3943_fdr	26	40	36	21	62	21	53	29	76	29
CCCTAGTACCCGCACA	ref_3943_fdr	41	64	46	35	63	30	89	35	55	42
GCGCATCATTTTCTCT	ref_3943_fdr	66	114	75	54	125	71	104	67	120	52
GCGGGGCACGTACTAC	ref_3943_fdr	57	94	89	76	108	54	117	61	95	61
CCTGATTCACCTTCGT	ref_3943_fdr	9	28	26	23	27	14	30	9	34	12
TTTAGTTCGCCTTGCT	ref_3943_fdr	20	26	26	24	29	12	29	16	42	15
GCCCATTAGAGTTCTA	ref_3943_fdr	22	43	28	31	49	26	48	23	45	18
CCAGTTTCTGTAGTGG	ref_3943_fdr	23	51	19	28	46	18	49	25	52	16
CTTATTTTGGTGCCTC	alt_3943_fdr	165	220	226	226	234	196	184	183	199	154
TCTTCTAGAATCCATA	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
CATGCCTCGCGGACCT	ref_3943_fdr	7	9	7	14	7	12	9	7	16	3
GTACTCGTGACCACTA	ref_3943_fdr	21	35	25	29	36	15	30	27	36	22
AGCCCGCTTCTCTCGA	ref_3943_fdr	8	8	1	5	6	6	10	5	8	8
GGGTCCCTTCTGAGCA	ref_3943_fdr	31	35	29	23	31	13	39	25	44	16
CCCGTCTTCGGTTACT	ref_3943_fdr	9	14	8	5	10	5	15	4	6	1
TGTGGTTCACCTCTAT	ref_3943_fdr	2	2	0	0	5	1	5	4	3	3
GCCTGACTGCGAGTGA	ref_3943_fdr	3	1	2	2	0	0	2	1	3	0
CCTCCGTGTGGTTCGT	ref_3943_fdr	23	61	18	16	57	21	58	19	57	17
CTTTATGTGCATCTCT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTGCATATCTGTACAA	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
CACCCAGTGCTATTAT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TCGATACCGTTTTGTT	ref_3943_fdr	39	73	39	39	75	32	79	25	76	28
GCACGGCCAACACTAT	alt_3943_fdr	76	115	105	92	130	74	102	83	121	76
GATATTAACGATTACC	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GAAAGGGTGAAACTTG	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGTATGATCCGGT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTGCGTTCAATAA	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
AGCAGATTACCTACCT	ref_3943_fdr	7	58	8	7	48	4	53	5	43	3
GATGGCGAATAGGCGT	ref_3943_fdr	3	1	2	2	2	2	4	1	3	1
GTACGACGTCTTCGAG	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGACTATCGCAGA	ref_3943_fdr	97	130	104	84	175	81	156	80	143	85
AATTCTCGTTACGGGG	ref_3943_fdr	82	89	95	75	112	63	102	64	112	67
CGGAAACTTTTAATTC	ref_3943_fdr	21	22	17	20	22	13	41	12	33	15
TAGGAGTCAGGTATCT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCCCGGAAACTGC	ref_3943_fdr	28	29	16	22	33	18	43	12	35	17
GTTTCGACCTTGGAAG	ref_3943_fdr	4	13	11	3	14	7	7	2	12	4
CCGTCCTATGATGCGT	ref_3943_fdr	51	125	61	61	164	24	149	36	180	47
AAACTTATCATCATTG	ref_3943_fdr	54	92	53	57	69	41	93	36	98	44
TTCCCGGCGGTTTGAT	ref_3943_fdr	14	30	20	11	25	13	24	13	21	11
AGTCTTTTACGTAGTC	ref_3943_fdr	51	93	49	44	102	36	95	34	84	57
CCAAGGTTAAGTTTTA	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GCGCGACTCGAAACTT	ref_3943_fdr	11	23	15	9	29	12	32	12	27	10
AGTATGATCATCCTAC	ref_3943_fdr	68	114	63	64	118	55	93	76	93	71
TTACTAATTGAGGTTT	ref_3943_fdr	22	30	26	21	33	28	25	18	30	10
ACCCGTCTTCTTATTG	ref_3943_fdr	50	79	52	51	71	33	72	49	73	36
TTCACGATTCGTTAAT	alt_3943_fdr	31	33	33	25	33	21	30	33	43	24
CGTAAATTCTCAAGTG	ref_3943_fdr	22	49	42	28	53	31	52	22	63	30
ATCATATGGATCTTAC	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GATTGTCGTGAACATA	ref_3943_fdr	16	22	19	15	28	13	23	13	17	11
GGGTTTGGGCCACTTG	ref_3943_fdr	112	212	137	117	195	106	242	122	239	108
TAACGAGCGTTATGCC	ref_3943_fdr	1	5	6	6	3	7	5	5	7	3
CACTTAATCGCTTCGT	ref_3943_fdr	23	30	38	22	22	16	41	23	27	17
TGTCCCGTGTTTTCAA	ref_3943_fdr	34	50	39	33	47	32	57	22	53	26
ACGGGTCTGTGGTTTC	ref_3943_fdr	35	51	45	32	47	43	55	39	66	31
ACATGTAGATTTTTTT	ref_3943_fdr	8	26	20	12	36	8	21	12	22	15
TTACTAGCATCTAGTT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTGTTACAAGCT	ref_3943_fdr	4	12	12	2	19	2	9	11	17	6
TTTTGACGTTCCGGAC	ref_3943_fdr	11	19	17	19	33	12	34	16	26	5
TCACTTATGGATAGAT	ref_3943_fdr	18	20	21	12	18	15	23	6	15	10
CGATGGTATTGTTGAG	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGCGATCGCTTAT	ref_3943_fdr	38	50	28	31	61	30	49	31	79	28
GACTCACACGCTGGCG	ref_3943_fdr	59	93	92	47	85	61	109	62	109	52
ACGTTCATAATTGGGC	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGACCCGTTACGT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAGTGACCTTCCG	alt_3943_fdr	110	140	141	135	116	100	150	93	146	88
GTCGAACGCGGGGGTT	ref_3943_fdr	4	31	8	7	30	1	31	3	28	5
TGGAGCCCAAAGAGCG	ref_3943_fdr	23	20	12	11	24	8	25	14	20	12
CAAAGATTCCTGTGGG	alt_3943_fdr	14	22	18	11	21	13	20	16	17	13
AGTGTTGGGACGCGCT	ref_3943_fdr	123	168	110	94	176	103	198	88	199	84
TTGCTTGGGTTATGTC	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCGTGCACTATTT	ref_3943_fdr	46	96	58	49	73	39	88	25	79	33
AACAATGCTTGACGGC	ref_3943_fdr	36	78	51	48	66	51	81	39	66	42
AATGGCTTTATGCCGT	ref_3943_fdr	36	55	48	46	75	44	59	42	59	33
CAAAAGTTTGCGATCT	ref_3943_fdr	31	41	34	31	48	23	61	28	65	29
CTTAGAACTTTTTTGT	ref_3943_fdr	52	122	75	51	139	46	107	65	113	31
TGGCTTACAGATACTT	ref_3943_fdr	36	55	34	41	69	37	53	37	67	25
AGTGGTACTTGTACAA	ref_3943_fdr	23	36	23	30	31	29	44	23	48	18
TCGTCAATCAATCACT	ref_3943_fdr	3	8	9	1	10	6	9	2	10	7
TCTCTCTGTACCAAAT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTTGTCTCCAATG	ref_3943_fdr	52	111	72	58	87	50	112	36	132	43
ACTAGGGGTTGATCTA	alt_3943_fdr	14	28	16	12	17	9	18	12	21	14
CTCACCAATGCGTGAA	ref_3943_fdr	10	44	1	4	35	8	55	10	50	11
CTATGTAAGATCATAT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTATAGCGCCGTTGAT	ref_3943_fdr	83	122	100	77	86	75	122	55	145	47
TTCTGGCGCCCTTTGG	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
AGCCAACGCGGAGTCG	ref_3943_fdr	115	208	154	159	219	109	250	126	231	114
AAAATCGTTGCTTGGC	ref_3943_fdr	59	62	41	53	62	46	59	56	64	34
ACTCATCGGGGACTGT	ref_3943_fdr	9	10	3	9	18	2	15	10	12	9
CGCTAATTCTCTTTAA	alt_3943_fdr	57	107	60	68	123	48	109	52	121	41
TTGCCGCTAACTTACA	ref_3943_fdr	40	85	51	43	82	44	75	43	109	41
TCACGTAGGGTCTCCC	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCAATGGGACGGT	ref_3943_fdr	11	10	5	5	11	7	11	7	6	5
GTGTTCATTGAAAAGT	ref_3943_fdr	33	41	36	24	57	30	88	34	79	33
GAGTCTTCAATGGGTC	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCGCTACCTAATT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTGTACGTCGTCCCTC	alt_3943_fdr	40	58	53	21	69	29	74	41	87	29
TCTGCTGTAACCTGTG	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
CTCGACATCGTTTTGC	ref_3943_fdr	74	110	70	85	119	70	138	78	161	65
GGACTTCATACGATTA	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTTACTACCCTCCAAT	ref_3943_fdr	9	7	9	8	5	11	13	7	7	6
TGTCTTGTTCTCCAAT	ref_3943_fdr	0	0	0	0	0	0	0	0	0	0
TAAACCTTGTCTCTTA	ref_3943_fdr	34	72	70	52	72	45	80	42	98	50
ATATTTCATTCGAATG	alt_565_fdr	41	41	57	46	51	38	53	30	50	46
ATACGCTCGTTCGGCC	alt_565_fdr	39	37	41	30	44	30	32	33	43	46
CGCTCATTTCCGTTAC	alt_565_fdr	41	58	43	38	82	35	70	35	63	35
ATAGCACCCTTAAACG	alt_565_fdr	40	37	52	32	45	30	46	40	45	41
GGGGTCACTGGTCTTT	alt_565_fdr	29	40	44	48	29	35	54	46	45	28
GAACATACGTCTGGCT	alt_565_fdr	20	18	25	15	16	28	21	17	12	24
ATGCTTGGACTGCCTA	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
AATAAGCCGACTTGTT	alt_565_fdr	6	4	11	13	6	3	7	6	4	5
GGCAACCTACTTGACG	alt_565_fdr	26	24	25	16	26	17	18	20	23	29
TGAATGGCTAGCTTTC	alt_565_fdr	13	12	8	13	7	8	9	3	7	12
ACGGTTTAAAGTACGG	alt_565_fdr	19	14	34	9	15	21	34	18	40	16
GGTCTTGTTGTTTGTT	alt_565_fdr	24	46	43	39	42	35	42	28	31	29
CCGAACTCGAGTTGAA	alt_565_fdr	17	16	19	8	25	9	11	11	15	22
GAACCTCCTATACTCG	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
CAGCGACTTAATGTGA	alt_565_fdr	25	74	27	18	97	20	83	20	82	27
CGACAATTTAATTTGC	ref_565_fdr	28	61	37	43	64	37	47	38	76	34
TGCGACATCTTTGGTG	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTGTTTAAATAAA	alt_565_fdr	8	14	13	7	9	11	8	8	6	6
TGGGTCTTCTCGTCAT	alt_565_fdr	36	24	34	39	45	43	41	32	38	22
TCGCCCGAGTTGCCAA	alt_565_fdr	18	19	9	9	15	18	10	13	14	9
TGGCGATTTAGGCGTA	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
TCACGGATTGAGCGGG	alt_565_fdr	106	62	113	80	95	89	71	82	79	76
AAAAAGTATGACTTAC	alt_565_fdr	1	19	1	2	19	1	23	2	9	0
AATAGGGCCGATCCCC	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCTAACGGAGCTT	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
TAATGGTTTATAGCCA	alt_565_fdr	27	17	25	18	22	8	19	15	10	12
CGAAGTCCGATAAAGT	alt_565_fdr	63	50	61	61	57	60	50	55	56	40
CCACAAGTCGTCATGC	alt_565_fdr	6	8	6	5	5	4	5	3	7	4
TTCTGTTAAATTTACT	alt_565_fdr	70	67	82	77	67	83	57	80	66	72
ACAGAGGTGGGCAGGG	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGAACTCCTACTA	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGTTTTGTGCTCC	alt_565_fdr	28	20	33	31	27	26	39	26	22	20
GGGGCGCACCATCGGT	alt_565_fdr	27	22	32	15	18	20	28	28	27	16
ATTTGGCTGATATTTA	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
TTCGACAGTGTGATGG	alt_565_fdr	25	23	31	25	25	29	26	25	29	31
CGGTTTATATGCGCGT	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
TATTGCTATTCTTTTC	alt_565_fdr	5	6	11	5	4	11	5	3	5	4
CTTGACATACTACGGA	alt_565_fdr	12	15	16	20	15	20	19	19	11	9
TCTCGTGTACCTATTA	alt_565_fdr	52	55	60	39	41	62	43	39	68	33
TTTGCGACTGCAGGTA	alt_565_fdr	5	5	9	2	7	15	4	6	7	4
TGTGCAGATTGGAACC	alt_565_fdr	0	0	0	0	0	0	0	0	0	0
CCTGAGGCCCTCTTTG	alt_565_fdr	38	44	37	33	34	33	35	40	35	36
GAGGTTAAGGACGGCA	alt_565_fdr	126	83	117	122	94	104	98	102	121	115
TTGAATTGTTTCCTAC	alt_565_fdr	28	22	30	29	28	23	15	27	20	21
CCCCTTTTTAACGCAC	alt_565_fdr	27	38	48	60	51	37	44	44	61	26
ATTTAGTGTACGCACT	alt_565_fdr	10	8	13	10	14	10	14	8	10	16
TCAATCTCGGGGCCTC	alt_565_fdr	188	174	222	188	201	182	195	179	169	155
AGTACCCTTGGTGCTG	alt_565_fdr	150	109	158	153	140	118	99	133	143	137
CTTGGGGGATCAGTAG	alt_565_fdr	73	41	72	54	39	71	42	72	45	63
AAATGTTGTTTAGCTC	ref_2134_upstream	89	136	93	94	126	88	158	75	157	72
CACGGCGTCTTCATTT	ref_2134_upstream	0	6	4	5	6	1	3	3	4	2
GCACTCACATTCGTCA	ref_2134_upstream	29	54	24	23	52	20	54	27	50	16
CCTATCGGGCCATCCG	ref_2134_upstream	13	10	13	15	23	13	23	15	24	14
CGGATCGCGCATGGTC	ref_2134_upstream	12	22	11	16	30	19	17	11	26	12
GAGTCTGGGAGTGTCT	ref_2134_upstream	35	95	35	37	93	34	76	36	68	37
AGATTGCTTCGGTTGC	ref_2134_upstream	4	11	5	6	16	5	15	2	20	4
CTAGTAGGCATCTGCT	ref_2134_upstream	4	19	12	6	11	4	16	7	10	2
CGAATGTATTGTGCCT	ref_2134_upstream	12	10	12	8	10	5	16	1	10	4
ACATGTTCTGTGGATA	ref_2134_upstream	29	40	35	21	43	27	42	21	45	19
GGCGATACCAAGACTC	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TTGAAATGGACCGTCA	ref_2134_upstream	42	84	64	37	82	57	90	46	91	48
ATCGCGGTATCTATTA	ref_2134_upstream	10	26	25	8	42	17	30	7	15	12
AGTGTCATGGTCCCGT	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTATAAGTACTAT	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCACAGCAGTACC	ref_2134_upstream	24	55	31	30	49	21	58	21	52	28
CTGCCCTGAGATGCCC	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TACTTTTGATTTGCCT	alt_2134_upstream	131	216	125	119	191	108	180	102	231	101
TGCTCCGGGCTTCAAC	ref_2134_upstream	39	56	43	33	86	56	88	45	63	41
AGGGTAACGACAGGTC	ref_2134_upstream	62	90	68	47	100	55	89	51	124	43
AACTATTCGCTTGCGA	ref_2134_upstream	6	10	7	7	11	7	4	5	15	6
TGTAGTTAAAATTCAT	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGTCCGCAGCCCC	ref_2134_upstream	8	15	9	11	19	9	21	4	17	4
TAGAGAGTGACTTGTT	ref_2134_upstream	6	20	28	11	16	18	17	20	12	11
AATGTTGTTTCCGTCA	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
GCAAGAGGCATGGAAT	ref_2134_upstream	1	2	4	3	5	2	1	2	4	1
AATTATGCACAATCTG	ref_2134_upstream	9	9	11	10	13	3	10	2	17	8
ACCATTCAATCTTTCA	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTCACATACAGTG	alt_2134_upstream	151	198	210	143	227	160	188	132	237	118
TCTCTACCTGTTCATC	ref_2134_upstream	1	9	4	1	5	4	3	5	5	0
GAGAATTACGGTGTCG	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATGCAGCAAAGT	ref_2134_upstream	25	50	41	38	41	20	58	19	51	38
TTGCTCACGTACCAGT	ref_2134_upstream	12	50	19	31	33	12	38	11	37	6
CTTGACCTCATCAATG	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCTCGTTCTATT	ref_2134_upstream	29	51	31	31	57	23	39	16	47	18
TCATATCCCCGCAGCT	ref_2134_upstream	24	74	31	22	85	21	85	26	90	16
ACCGAGGTCTACTCTT	ref_2134_upstream	102	200	70	64	236	70	225	62	223	54
TGTCCCCTACACACAG	ref_2134_upstream	9	30	12	11	33	17	27	15	33	7
AACAGTTATTAGATGT	ref_2134_upstream	85	126	81	76	98	67	141	69	150	56
CGGTCTGTGTGCTTAC	ref_2134_upstream	0	11	1	1	10	1	14	0	3	1
TTAGCCCTGTCTCTAT	ref_2134_upstream	52	69	51	37	65	27	68	29	81	23
GTGCAGATTTTGTAAG	ref_2134_upstream	19	22	19	14	38	11	30	19	35	11
ACCTACCTAATGGATA	ref_2134_upstream	1	11	9	3	9	5	7	4	17	2
TTGTAACAGGTCAAGC	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTAGAAAGCTCCC	ref_2134_upstream	31	73	26	24	80	22	77	16	91	20
GGATCAGTATTTGTTT	ref_2134_upstream	7	12	14	9	10	7	17	7	18	6
TGGATGACTTAATACC	ref_2134_upstream	19	49	22	21	47	24	39	28	29	28
ATCTGGCGGTGCTTCA	ref_2134_upstream	4	23	16	12	21	8	11	8	25	9
TCTGCAGATATTCAGC	ref_2134_upstream	8	18	17	12	29	24	16	12	22	7
TAAGCCCAATGTATTA	ref_2134_upstream	130	292	170	145	255	149	310	121	334	136
GAACAGTCGCATCAAA	ref_2134_upstream	56	110	87	66	141	64	122	61	174	64
GTTAACTAACGCTTAT	ref_2134_upstream	106	187	168	128	191	115	187	115	202	101
GACATGATTCCGTGTA	ref_2134_upstream	7	4	4	6	4	8	6	5	4	9
TGAGCGGCTAGTTTAA	ref_2134_upstream	23	53	30	15	32	14	46	23	42	20
CACAGTTGGTACCCTG	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCTAGGAGCATTA	ref_2134_upstream	15	28	19	11	22	13	27	14	23	14
CACTGAACAAACGACC	ref_2134_upstream	13	31	21	17	28	11	25	14	33	11
GACTTTCTTTGCAGTT	ref_2134_upstream	15	28	23	11	23	17	34	14	22	16
GGTTATGACTCTTCCG	ref_2134_upstream	46	63	45	47	45	37	54	38	54	21
TCCAGGCTTAGAGCAT	ref_2134_upstream	6	14	10	8	15	5	17	3	13	4
TTGTTCGTCATTTTTT	ref_2134_upstream	6	8	14	5	18	12	10	8	8	6
AGACGTCGGGGGTACA	ref_2134_upstream	31	58	25	25	55	29	44	25	60	20
GTATTATTTCAGGATC	ref_2134_upstream	5	17	6	11	16	6	10	5	24	1
CCTGGCCGCTTACGAT	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCGAGCTGTTGC	alt_2134_upstream	17	25	17	19	26	18	29	21	20	18
AGCAGCGTTTGTCATG	ref_2134_upstream	6	4	0	6	2	2	8	3	8	4
GCATGCTACATGACCT	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGGAAAACTTAGA	ref_2134_upstream	19	30	20	13	25	20	37	7	24	9
AGGAGGTCCGTTCCGG	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TACTATAGATTGTGTG	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
AATCCGTTCTTTATTT	ref_2134_upstream	4	7	6	2	8	5	9	5	15	2
CCCAGATCACTGCTTT	ref_2134_upstream	14	41	35	20	34	26	48	28	43	18
CATCTACGATGCGTGG	ref_2134_upstream	95	137	92	98	151	87	144	77	162	63
CATTCGATCTCTCAGG	ref_2134_upstream	26	54	26	24	48	31	60	28	63	24
TTTTCTAGCTATTATA	ref_2134_upstream	9	22	17	14	13	13	42	11	21	12
TCAGCGCCTTCGCTGT	ref_2134_upstream	7	23	18	17	25	2	20	8	23	4
GCAAGTTTTTCCCGGA	ref_2134_upstream	29	36	24	26	60	21	41	21	58	40
AAATATAATCTTCTGC	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTCGGAGTAATTC	ref_2134_upstream	2	2	3	1	2	1	10	3	5	2
AAATACTTCATGGCTT	ref_2134_upstream	50	112	64	56	109	49	107	45	116	67
TAGGTTGGGATACTTT	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
CCCAGGGTGCTGTTTA	ref_2134_upstream	27	47	34	26	40	37	62	33	49	32
CCCAGCGACGCGAAGC	ref_2134_upstream	2	15	5	7	13	2	21	2	8	6
CGTTCAAGAAGCGAGC	ref_2134_upstream	48	78	45	51	86	50	74	50	98	44
GGAGGCCTTTCAAGCA	ref_2134_upstream	39	39	28	32	46	23	51	32	45	26
AGATCCCAGTTGTCCC	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
TGTCACAATGTTGGCG	ref_2134_upstream	58	98	55	34	89	40	75	42	87	44
CGTATCTGCTCCAGTC	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
AACATGTGCCAGGTCC	ref_2134_upstream	10	22	16	11	30	8	25	5	12	7
AGCCTTGCTATCAAAC	ref_2134_upstream	5	6	4	5	12	6	14	7	15	5
GTGCGCTCCGTGTGTT	ref_2134_upstream	0	0	0	0	0	0	0	0	0	0
GGACTAAATATACGGA	ref_2134_upstream	43	67	68	25	62	29	73	35	66	31
TATGGTCGTTATCAAT	ref_2134_upstream	113	173	116	109	167	104	158	89	203	75
TTGTACCTGTCGTTTT	ref_2134_upstream	52	60	49	44	49	22	73	41	67	41
CGTTGAAAACTACTAT	alt_5198_fdr	63	20	77	62	38	57	46	62	30	62
CCGCCATGGGTTGGAA	alt_5198_fdr	223	170	312	271	162	201	164	208	190	226
TCTGTTCGCCTATATA	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
AATGGCGCAGCGTAAG	alt_5198_fdr	116	43	133	118	35	104	33	103	39	88
GCTCGCTGCCACCTAT	alt_5198_fdr	115	94	153	156	78	121	100	118	90	116
CGTATCCTGGAAAACC	alt_5198_fdr	22	4	32	25	9	29	13	19	1	24
CCACGTTTGATTCGAA	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
ATGGAATGCGTTTATA	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
CATTCACGTCTACTCT	alt_5198_fdr	60	42	89	75	45	67	48	62	53	40
TGTACAGCTCACCTAA	alt_5198_fdr	3	4	4	2	1	3	0	0	0	2
GCTCGATTCCCGCGTT	alt_5198_fdr	35	20	31	38	13	24	12	37	14	26
CTGAGGCCTAGGATTG	alt_5198_fdr	167	73	216	175	81	160	82	190	99	152
TTGTCGGAATTAGAAA	alt_5198_fdr	221	107	287	225	117	229	108	157	98	182
GCGCTGTAGCCTCTAA	alt_5198_fdr	2	4	5	3	2	3	4	4	1	2
GCTGCGTTTGTCAGGT	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
AGATGCTCTGTTTTGT	alt_5198_fdr	40	22	54	37	18	44	13	41	20	31
CTAATAAGATTCACCA	alt_5198_fdr	32	20	53	54	20	26	15	45	19	40
GTACTTATCTGTCTGA	alt_5198_fdr	62	29	82	80	37	70	57	72	50	79
GCCATTTTGTGGATTA	alt_5198_fdr	3	0	3	3	1	3	0	5	4	2
ATGACTGCTAGACCCT	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGGCGCCAAGTTC	alt_5198_fdr	45	19	48	44	16	44	15	46	25	29
GAATGGGTCGGCGCTA	alt_5198_fdr	67	24	88	75	39	84	32	56	25	53
CCTAGTAAATTTCCCG	alt_5198_fdr	23	22	17	12	20	16	11	9	16	18
GTCTGCGGGGCCGTTT	alt_5198_fdr	81	30	85	105	38	63	28	66	36	76
ACAGGCGTGTAAAGGC	alt_5198_fdr	174	79	173	144	77	130	73	124	78	131
GATTGGGTAGTCTGCC	alt_5198_fdr	20	6	20	23	7	15	10	15	15	16
CCCGGTTCCCATACAC	alt_5198_fdr	24	29	34	21	22	16	22	25	40	19
AGCTTAACGACTCGTT	alt_5198_fdr	240	117	227	187	123	183	104	169	131	140
GACTGTACATGCCCAC	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGCTCTTTCGTAA	alt_5198_fdr	37	8	62	41	12	45	28	44	12	33
CCTCTCGATGGGCGAT	alt_5198_fdr	79	51	96	92	43	71	35	70	57	67
AAACTACTTGTATTCT	alt_5198_fdr	69	35	81	75	20	71	39	74	40	59
TATCTGCCGTTCGGGT	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
CATCCCGTCTCGTTGG	alt_5198_fdr	10	23	31	14	21	12	27	15	22	9
ATTCTTTGAGTCTAGT	alt_5198_fdr	118	64	144	119	70	115	66	110	60	104
CTCTTCGGCGGGGGGA	alt_5198_fdr	18	3	12	16	7	13	7	12	11	11
GAATCCTACAACCTTC	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGAGGCAGCGTCT	alt_5198_fdr	25	12	33	32	16	21	15	32	12	20
TAGGTCCCACCTTTAT	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
GGTATGCCTCAATCGA	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCAGTGTCTCTAA	alt_5198_fdr	57	25	68	61	49	54	35	75	37	42
GTCGGGGTGCGGTCCA	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTACTCAAATCGG	alt_5198_fdr	19	5	28	22	7	25	9	13	10	24
ACAGGGAATCGTACTA	alt_5198_fdr	16	5	19	14	5	19	7	13	6	11
CTGATACGGTAGGAAT	alt_5198_fdr	123	51	141	120	60	110	51	122	56	70
CGATCCTCCTACTTTG	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
AAATTGATGTCCATTG	alt_5198_fdr	21	7	17	16	8	23	8	14	7	12
AGACTTACTAACCGAG	alt_5198_fdr	23	5	22	26	9	25	7	29	7	16
ACTACGGTGAATAACG	alt_5198_fdr	56	31	56	76	37	73	27	60	42	55
CTATGACCGGGCCAAA	alt_5198_fdr	26	9	33	30	6	20	15	27	15	25
CGAAACATGTTATGCG	alt_5198_fdr	11	6	15	8	6	14	14	8	4	5
ATGACAATTCATCTCA	alt_5198_fdr	87	45	108	111	47	95	57	84	49	63
CCTATGGCCCCCATCA	alt_5198_fdr	102	60	121	113	58	74	55	94	77	100
TCTGGAACCGTCCTGG	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTTCTGTTCTTA	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCAGAAATTTGAC	alt_5198_fdr	40	16	52	24	11	30	15	29	12	25
TTGTAGCCACGCTACT	alt_5198_fdr	65	35	85	61	30	49	30	77	40	70
TGGTCTCCTCTCTCCT	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
GTCAAACTTTGGCAAG	alt_5198_fdr	102	53	105	107	49	93	54	84	53	68
GCGAACTTGTATATTC	alt_5198_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCACAGCGCCGGG	alt_285_upstream	9	3	1	2	8	3	12	4	7	8
CTACCCTTACCGCTGC	alt_285_upstream	6	4	5	2	8	3	4	3	5	5
ATACTCCAGGAGCATA	alt_285_upstream	21	24	14	21	17	19	21	11	20	12
CTCTCCGATGATTTAG	alt_285_upstream	16	31	17	16	38	18	18	17	47	10
CGCTTGGTACTCTACC	alt_285_upstream	29	40	33	29	56	23	49	26	55	20
GTACGATAATGCCGGT	alt_285_upstream	6	16	4	4	10	4	6	2	11	6
TTCTACCCCGCCCAGT	alt_285_upstream	8	22	8	9	27	11	34	13	32	8
ATGTTTTTGATCAAAC	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
CACCCATTACTCCTGG	alt_285_upstream	13	47	27	21	29	15	35	15	36	18
AGGTTGAGACTCCGCT	alt_285_upstream	11	5	10	10	13	5	9	6	10	3
GTATACGGGGTTGTAG	alt_285_upstream	3	9	3	4	11	4	8	7	9	6
TCCAGTTTGAAGTTAT	alt_285_upstream	7	19	6	4	10	10	9	9	9	8
TGTCGTGTGAATTTGG	alt_285_upstream	2	9	12	8	16	6	6	4	20	4
CCGATTTGTGAGTCAG	alt_285_upstream	82	106	89	76	109	63	111	62	110	66
ATACCTGTCCGACAGG	ref_285_upstream	54	90	74	58	72	43	102	34	88	42
TGCAATTACCCCACTT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TGTACTATTTTAGCCT	alt_285_upstream	31	45	22	29	54	25	56	23	64	20
ATGGCGTTGGTGCGAA	alt_285_upstream	25	44	38	30	43	35	54	32	40	29
GCTGGATTATGCGTAT	alt_285_upstream	107	130	121	71	143	85	128	67	134	71
ATTGTTAAGAGATTTA	alt_285_upstream	44	77	63	56	62	46	69	53	69	47
GAGGGTCACTTACTTC	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTCGTACCGGTA	alt_285_upstream	93	95	86	80	134	82	120	87	115	79
CTGCCGTGAGAGGTAC	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAAATGTAGTTCT	alt_285_upstream	60	48	39	36	75	34	56	42	76	36
TATATTTATCATGGGA	alt_285_upstream	4	0	3	2	1	4	5	1	6	5
TAACACTGGCATCCAC	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGGTTAGAACTC	alt_285_upstream	4	9	0	2	1	9	4	3	6	2
CGGCCTGCGATTGTAC	alt_285_upstream	39	79	42	44	54	41	43	28	55	41
GTAAAACATACGCATA	alt_285_upstream	12	15	15	14	16	11	17	14	18	7
TTTTATCTGTCCGATG	alt_285_upstream	147	190	155	118	204	143	188	110	210	138
ATTCAGGCAAAATCAG	alt_285_upstream	4	5	5	4	3	3	3	5	5	9
GCACGGTAAACCATAC	alt_285_upstream	6	14	8	7	12	7	17	2	25	9
GAGGCTATCCTGTGCA	alt_285_upstream	51	85	48	40	93	54	74	35	77	25
CGTACCAGCCGCACTG	alt_285_upstream	2	13	11	8	18	4	8	11	12	6
ATTGCTGTGGATACAG	alt_285_upstream	61	58	75	58	69	59	84	39	87	38
TGCCTTACATATGCAT	alt_285_upstream	153	265	185	143	276	138	292	155	300	146
GCCACAATTCCCGTTC	alt_285_upstream	5	16	12	6	14	9	16	13	24	9
TATTCCAAACGGATTG	alt_285_upstream	44	60	41	34	67	49	76	32	85	33
TCGCCAAACTCGCTTC	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGTGTTAAGCTC	alt_285_upstream	26	32	26	23	42	16	45	24	38	17
TGGTCTCCGACGGGCT	alt_285_upstream	8	7	8	7	11	9	14	5	7	3
AGATTTGCAAAATAAG	alt_285_upstream	27	43	27	21	45	24	53	15	33	14
AGTCAATGAGTCGAAG	alt_285_upstream	33	46	39	17	50	29	46	31	48	19
CATTTATTCTGTTTTC	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
ATACGTGTACTCGTCA	ref_285_upstream	259	350	324	269	323	238	307	218	342	209
ATCGTTCGCGCGTGGT	alt_285_upstream	56	100	70	59	96	45	101	62	82	45
TCACCGGCCGACACAA	ref_285_upstream	0	6	1	0	4	2	6	1	6	1
CAGGCATTTGTTATGT	alt_285_upstream	48	77	53	34	78	42	59	30	58	44
GCTGGCTGGGTTGATT	alt_285_upstream	49	70	56	44	86	49	58	46	94	38
GCATGAGCTCGGGTAA	alt_285_upstream	93	139	115	101	120	112	153	81	122	78
ATGCTTCTTGCAAATT	alt_285_upstream	21	30	24	19	20	21	31	21	27	18
GATAAGATTTCCGTGG	alt_285_upstream	29	58	40	46	68	52	81	35	74	40
CAGCCATCTGATTGGG	alt_285_upstream	1	7	3	0	14	1	8	0	12	1
TCTGAACTCTGGACTC	alt_285_upstream	31	45	28	30	33	23	31	18	37	23
TATGTTGAATGTAGAT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TACTGGTCCTCTGTAT	alt_285_upstream	56	87	75	35	101	53	119	42	116	53
TTTCTCATGATCCCCC	alt_285_upstream	29	28	34	5	33	28	12	35	24	23
ATTCAGGTTAAATTTT	alt_285_upstream	12	12	14	8	16	11	15	4	17	7
ACCGTTCATACCTCCC	alt_285_upstream	13	8	6	6	10	4	13	6	18	1
GGGGCAAGCCGTTGTT	alt_285_upstream	77	130	100	88	102	63	116	89	128	77
TCCGTGGGGCCACTCT	alt_285_upstream	14	21	26	20	19	10	22	16	27	20
ATCCGCCGCTACCATT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCCCGTTTTCTCT	alt_285_upstream	17	18	12	14	19	13	17	7	23	9
ACTTGTTTGTCCTTAG	alt_285_upstream	128	140	142	101	130	88	136	112	198	106
TACGTTAAGAGTGAAT	alt_285_upstream	39	51	44	34	61	28	52	30	45	31
TGGACCTTTAGTTACA	alt_285_upstream	58	79	63	47	60	27	56	40	67	55
TTAAACGTCTCTTTTA	alt_285_upstream	20	26	14	20	35	23	28	18	21	20
CGAGTACTCATAGATA	alt_285_upstream	24	38	27	25	51	21	42	20	44	28
GACAGTTTGTGGTTGC	alt_285_upstream	3	22	23	18	17	5	18	8	23	11
CTGCACGCTTGGCATT	alt_285_upstream	25	43	33	24	25	34	54	18	41	18
CTTAAACTTTTATGCT	alt_285_upstream	5	9	6	8	13	9	13	10	10	10
CCTACAGTGTTTTCCG	alt_285_upstream	10	10	4	8	12	11	20	9	12	3
CTTAGGTTATGTTTTA	alt_285_upstream	10	28	27	8	29	18	26	10	35	13
TGTGCTTGTAATAGAT	alt_285_upstream	12	12	13	11	13	12	11	6	14	9
TTTCAACGTGTCTTTC	alt_285_upstream	12	10	7	5	6	8	7	7	10	6
GATGTCAAACGCCGGT	alt_285_upstream	63	72	90	74	109	64	105	85	85	51
TCTGGACCTGAAATAT	alt_285_upstream	52	59	51	45	80	37	71	35	69	44
CGTATCTTGGAAAGGT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TTATCGGTTTGCAGGG	alt_285_upstream	8	21	14	11	10	16	26	12	16	16
TAAGGGCAGTCTTTGG	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCACGACAGCATC	alt_285_upstream	40	77	65	66	76	43	90	41	95	46
TTACTCTTATTTGACC	alt_285_upstream	26	84	30	23	68	12	65	27	92	24
TCACGCGGATGAGCAA	alt_285_upstream	94	115	121	111	158	93	138	96	129	92
GTTGCCGATACCTTCA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TCAGATTCTGGGTTCT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TTTATGTGAAGTTCGA	alt_285_upstream	11	40	28	13	39	15	23	18	41	9
CTAATCATTGGCTAGG	alt_285_upstream	67	75	76	80	87	64	93	55	116	50
TATTTCTCGCGAGGCG	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
CATCACTACGAGAAGC	alt_285_upstream	0	8	9	3	3	4	4	4	2	3
CTCTGTAGCGATCTTG	alt_285_upstream	16	24	28	8	19	11	26	11	23	16
TTCTTTCGTTAGGTTG	alt_285_upstream	66	76	58	46	79	40	86	42	60	41
TTCGATTGTGTTGCTC	alt_285_upstream	4	10	5	5	14	4	13	4	9	6
GGGCATTCTTGGTACT	alt_285_upstream	19	28	25	23	28	19	23	17	35	15
TCGTTCATCGCATAGT	alt_285_upstream	48	53	50	40	56	37	66	49	47	39
AATAGCTCGCGATCGC	alt_285_upstream	11	21	22	28	19	22	22	13	31	22
TCATCTTCGCGTCCAG	alt_285_upstream	16	16	17	11	16	10	16	7	17	4
CGCTGCTTTTTCACGG	ref_285_upstream	203	259	259	206	280	192	269	175	265	189
AAACCGGTCGATTTAT	alt_285_upstream	0	25	5	8	30	4	26	2	32	3
CAAACATTGCCGGGGG	alt_285_upstream	4	14	5	10	11	13	4	8	11	0
TTAAGTTCACATAGTG	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGCCCCAACTATA	alt_285_upstream	5	4	3	6	10	11	5	5	6	6
GTTACCGGTGTCTGTT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
AAATCAAACGTTACAT	alt_285_upstream	43	29	40	31	27	34	40	22	35	30
GTCCGTTGGGGGATAG	ref_285_upstream	69	66	91	64	81	82	95	48	98	64
TACGGGATGTCTAGAA	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGCACAATCCGGA	alt_285_upstream	0	2	2	4	4	4	3	2	3	4
AAGGAGCCCTAGATAG	alt_285_upstream	34	50	47	37	47	21	52	29	45	17
AGCGATCTTTCCTTGA	alt_285_upstream	45	96	68	54	82	54	101	48	93	49
ATCCGCATGAAGCCGG	alt_285_upstream	28	29	33	32	24	26	40	24	28	24
TGAACGTAGGACGCTG	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGTGAGGGCAGGT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
GATCAGGAAGAGGCGA	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTGAGTCGGGCCA	alt_285_upstream	48	51	62	46	64	37	59	57	60	44
CACGGCTATATATGTC	alt_285_upstream	2	30	2	5	23	2	29	2	35	8
TAACCTGTTTGATTTC	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TTAATGCGCCTGGAGT	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACTAAGTACTCG	alt_285_upstream	12	15	23	11	12	7	24	15	18	4
TACTGCAAGGACCCCG	alt_285_upstream	3	16	5	4	10	3	14	3	19	5
TTCGAAGGCAAGATCC	alt_285_upstream	0	0	0	0	0	0	0	0	0	0
TACAGTTATTTTGCAT	alt_285_upstream	16	28	16	22	35	16	30	12	27	16
AGATGCACGTGCACTT	ref_5933_new	10	22	15	13	37	9	30	9	24	12
TAAGTAGAAGAGGCAC	ref_5933_new	39	95	48	57	77	46	80	37	103	49
ATAAGGACTTTGGGCC	ref_5933_new	46	76	56	54	75	54	94	39	74	33
ATAGTTTGTTATTATT	ref_5933_new	7	14	8	7	11	8	8	4	5	2
TCTGTCTCTCTACGTA	ref_5933_new	1	5	2	2	2	1	0	1	2	1
GGGGTTGTCTTTGCGA	ref_5933_new	5	5	7	8	13	15	14	3	21	4
ACGCTAAAGTTATTCT	alt_5933_new	9	12	10	16	16	13	10	20	8	10
AATCCTATCAAGTCCG	ref_5933_new	27	44	40	20	44	28	57	31	39	22
TTTATCAGGTCTAGGT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
GAGGAGTCCGCTATAT	ref_5933_new	32	27	31	21	27	15	40	26	42	23
CATATAGACGTTTGTT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TGTCAGCCGAAAAGAA	ref_5933_new	0	0	0	0	0	0	0	0	0	0
GCGCCGGGATTGGTCA	ref_5933_new	2	2	4	2	5	4	2	0	3	3
CTACTAAGCATTATTT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
GCACTGATCAGACGCC	ref_5933_new	155	198	209	177	212	165	268	150	244	131
CTCTGTATCGCCTGGC	ref_5933_new	16	53	24	20	40	13	41	18	55	15
ACGGCTTGAGCGCCGA	ref_5933_new	0	0	0	0	0	0	0	0	0	0
ACTTAATCCCTATCCA	ref_5933_new	34	49	25	28	37	18	39	20	51	32
ATACAAGGCCATGGTA	ref_5933_new	34	67	29	27	53	25	46	32	57	23
GCTGAGTTGTAGGAAG	ref_5933_new	26	34	29	13	33	14	45	22	46	16
GAATCGCGTCATTGGA	ref_5933_new	0	0	0	0	0	0	0	0	0	0
CAAGATGTGGTGTCGC	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TGTTATCGTTGTTCGC	ref_5933_new	0	0	0	0	0	0	0	0	0	0
AACAATATGGGACTTC	ref_5933_new	13	16	14	16	17	11	11	14	18	6
AATGAGATAAGGCATC	ref_5933_new	1	2	0	0	0	1	1	0	0	1
TAGATACTCGTTGGTC	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TTTGTTTCTCGCGTAT	ref_5933_new	13	14	8	11	14	6	12	8	19	16
TATTTAATCTTTGGTT	ref_5933_new	58	71	51	52	82	45	85	37	81	46
CGGCCCCACCCCGCGT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
GACCTCTAGGTATAGC	ref_5933_new	0	0	0	0	0	0	0	0	0	0
CAAACATTCTCTTCTG	ref_5933_new	2	4	2	2	1	2	4	2	5	0
CCAGTTTCGGATTGTC	ref_5933_new	1	6	3	4	2	2	5	3	3	2
TTGCTACAATTACGTT	ref_5933_new	26	41	32	23	48	27	55	29	60	26
CGGCCCAATGTTATTG	ref_5933_new	4	3	6	6	12	7	10	4	11	3
TCGTTTACCACGAACT	ref_5933_new	11	21	16	10	17	6	19	8	15	5
AATCCCGATTGTTTTT	ref_5933_new	8	15	8	10	17	4	16	8	15	8
CGCCAACAGTGGTATT	ref_5933_new	15	19	14	15	26	14	22	10	25	19
TCAGCGGGGTATCTGG	alt_5933_new	104	345	122	109	330	85	359	117	345	91
CATGCTGCGTACCTAT	ref_5933_new	17	38	24	22	29	11	36	19	37	20
CAAGATCTCGGGTCTG	ref_5933_new	5	7	3	8	6	3	5	9	12	1
CTGTTTGCACTGTGCT	ref_5933_new	4	34	7	7	30	7	33	8	26	7
CCCAACGCGGGCCGGA	ref_5933_new	0	0	0	0	0	0	0	0	0	0
GGGGTAAGTCCTGTCT	ref_5933_new	1	7	4	0	2	1	3	2	4	2
CGAGTGTGAAGGCACG	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TGAGGGCCCTACCAAA	ref_5933_new	0	0	0	0	0	0	0	0	0	0
GCCCATCCTTCGCTGC	ref_5933_new	39	36	27	35	32	33	30	36	37	32
TAAAGCACACCTAATG	ref_5933_new	48	78	55	43	84	47	84	44	100	52
TAGTGTTAACAACATT	ref_5933_new	33	47	19	32	44	24	46	31	49	23
GCCCCACCATGGTCTA	ref_5933_new	2	9	6	6	7	2	12	6	6	7
CGTCATATTACGGTCT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
CCCGTGAAGCTCTCAT	ref_5933_new	35	38	33	26	38	26	38	21	40	13
TTTCGTTAGCAAGTCA	ref_5933_new	4	2	3	2	3	2	7	1	7	0
GCCATCCTCTCCCACG	ref_5933_new	0	2	1	0	1	1	5	0	4	0
ACGGGCCTCTCATCGG	ref_5933_new	24	57	32	19	44	32	58	26	52	25
CTAGAATTTTGGGGTC	ref_5933_new	0	0	0	0	0	0	0	0	0	0
ATCATCTATCCTCTGA	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TTTGCGTGGTTCACTT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TACCTGCAAGCGGTAG	ref_5933_new	12	59	9	6	52	4	83	9	80	7
GACCGCCTTACCTTCC	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TTAGCGTGGCTACCTA	ref_5933_new	15	22	9	10	23	17	21	12	17	12
CGGTTCTCCTGGTATT	ref_5933_new	37	45	33	37	54	31	58	27	63	29
GTCATTCACTCACTCT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
CCATCAAACCGGCGAC	ref_5933_new	2	8	1	3	8	3	3	2	12	9
TTCTTCACAAAGACAT	ref_5933_new	30	43	41	26	46	33	47	22	48	36
ACTGAATCTCCTCCTC	ref_5933_new	9	20	15	15	26	23	25	14	23	10
ATAGAATCTGTAAATC	ref_5933_new	0	0	0	0	0	0	0	0	0	0
CACTGACTTATCACCA	ref_5933_new	20	44	51	16	46	22	26	25	32	22
CCCATTCACGAATACC	ref_5933_new	0	3	1	1	0	0	0	1	2	1
CCGTCGCGTCGACCTG	ref_5933_new	4	8	1	3	8	3	11	0	8	2
TTACTAAAACTCACTG	ref_5933_new	0	0	0	0	0	0	0	0	0	0
GACGAGCAGCTAGACG	ref_5933_new	35	81	52	51	96	39	86	53	70	36
AGTGAGTTCAATCGCA	ref_5933_new	21	41	27	17	38	17	34	7	36	19
GTATTGGCATGCTATG	ref_5933_new	20	48	36	35	37	14	47	17	57	20
TTCCCTGCGCTCATGT	ref_5933_new	20	36	23	15	47	11	34	14	35	19
GCCCTTTCTGAGTCTA	ref_5933_new	4	7	3	8	3	2	9	2	6	1
TGATTGTTACTGGGAG	ref_5933_new	18	24	21	23	42	25	36	20	29	17
GGTCATACCATCTGGT	ref_5933_new	25	43	33	31	61	30	61	27	54	17
TCCAGCTACGCCAAGG	ref_5933_new	12	17	17	6	36	9	22	13	28	18
TTGACTCTGTTCCTTT	ref_5933_new	0	0	0	0	0	0	0	0	0	0
TCAGAATTTTCCCTGC	ref_5933_new	15	19	24	18	26	11	28	13	37	15
TTGTTGTATTAAAGGA	ref_5933_new	36	53	42	50	56	30	56	38	44	26
TAGTTATCTGCTCATT	ref_5933_new	51	72	40	44	86	39	92	36	87	43
TGGGTGAATTGATAAT	ref_5933_new	9	21	9	12	16	8	11	20	14	8
TTGGTTTAGTTACCAT	ref_5933_new	2	4	2	1	3	1	3	2	1	1
CTTGTTGATAGCCGAA	ref_5933_new	7	21	9	12	22	20	14	8	14	9
TCAGATTGTCTGGTCC	ref_5933_new	22	38	25	22	38	15	43	20	37	25
TAGCACTGAGAGTTTT	ref_5933_new	6	11	6	7	19	4	10	6	15	9
GAATACACTTCCAAAA	ref_5933_new	6	6	1	3	2	1	2	3	7	3
CAGTCCCTGTAGTGGG	ref_5933_new	0	0	0	0	0	0	0	0	0	0
ATCTGGGTGTGGCTGT	ref_5933_new	3	28	12	12	21	8	18	8	12	14
ACTGTAGCGGAAATAA	ref_5933_new	73	127	79	80	127	73	109	59	124	68
AGCGGTCGTTGGCTCA	ref_5933_new	13	16	11	11	22	7	22	3	28	8
ACCGTATACGGCAGTC	ref_5933_new	54	114	86	52	152	67	98	67	133	62
GCCCACTTTGAATTGG	ref_5933_new	4	20	10	6	19	6	21	8	25	11
TTGCCGCTTTCCGCAG	alt_2169_reverse	11	14	12	13	16	22	17	11	10	10
AAAAGCGCATTTAAGT	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
TGTCACTTCGCGTTGA	alt_2169_reverse	17	22	27	16	27	24	21	17	33	17
ACAACAGTACCAAACC	alt_2169_reverse	61	83	88	69	83	63	103	69	97	52
AGTATATTAGTTTCTC	alt_2169_reverse	47	74	65	86	96	60	82	65	97	56
CTCGATGAATGAGATT	alt_2169_reverse	23	24	28	23	28	21	21	21	34	14
ATCTTAGGTTACAGGC	alt_2169_reverse	11	11	8	12	15	6	13	18	14	10
AACAGTGTAACGCACT	alt_2169_reverse	6	12	23	10	24	9	14	6	19	9
ACCCTACCAGTATGGG	alt_2169_reverse	13	21	24	15	30	22	23	15	18	11
ACGTTTCCCACAGGCT	alt_2169_reverse	24	32	42	35	34	29	29	15	39	15
ACATAGATTAGATTTG	alt_2169_reverse	18	14	10	15	12	10	13	14	8	12
CACGGGCGGAAAAAAT	alt_2169_reverse	30	28	30	17	22	22	31	18	25	27
CTCCTAGTTCTGGCTC	alt_2169_reverse	5	18	14	8	10	6	31	13	26	3
AGGTTCCTCACTGCTG	alt_2169_reverse	19	18	10	19	7	15	15	15	16	15
GCCCGTTTCTATTCAA	alt_2169_reverse	13	14	10	12	19	10	13	7	26	13
GCGCAGTCCTGTCGTT	alt_2169_reverse	9	11	11	7	5	7	5	8	12	5
ATTTCCGTATGCAAGC	alt_2169_reverse	8	6	6	5	4	7	6	9	2	4
CATCTCCACATGCCGA	alt_2169_reverse	10	11	13	11	11	12	22	9	20	12
TAGTCTTGAACGTTTA	alt_2169_reverse	8	10	10	7	21	4	12	4	11	6
AAACGCTTCCTGGTTG	alt_2169_reverse	74	96	79	88	80	54	118	58	92	71
CAATTACATCGACTGT	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCAGTTCCCCCCC	alt_2169_reverse	10	13	13	8	9	14	14	9	17	8
CTTCGAATCTCTGTCG	alt_2169_reverse	4	2	1	2	5	3	3	0	4	5
TAGCTAGGGATAAGGC	alt_2169_reverse	257	377	348	264	381	272	384	269	339	226
CTGATGCACTTGGCGA	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTGCGGGTATTTT	alt_2169_reverse	6	8	2	6	4	8	11	5	12	10
CGTTAAGAGCTCGTAT	alt_2169_reverse	1	1	0	5	1	3	1	2	1	4
GGGTCGGCTACGGCGG	alt_2169_reverse	57	75	56	57	43	54	64	69	70	42
CACCGGCAGCCATTTC	alt_2169_reverse	151	172	206	176	148	139	174	166	169	124
GCTCACCGGATCTCGT	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGCGATACAATAG	alt_2169_reverse	60	60	64	56	67	64	69	42	71	53
TACAATTCTAGTTTTG	alt_2169_reverse	194	228	263	174	227	174	251	188	256	156
ATCGTGTCTAACAGCG	alt_2169_reverse	4	11	5	6	11	7	12	4	12	4
TCCTTAGTTGTAATCT	alt_2169_reverse	119	189	144	128	162	124	189	129	172	131
CTTGGCCAGACTCTCT	alt_2169_reverse	95	148	120	87	120	82	149	67	154	75
AGTACCATTCACCGCT	alt_2169_reverse	43	65	50	59	88	61	57	59	75	46
ATGAGCATCATATCGC	alt_2169_reverse	9	10	12	10	13	18	13	8	13	9
ACAGGGAGTTCTAATT	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGTTTGAATGGTA	alt_2169_reverse	41	73	46	32	69	35	70	32	64	31
AAAACCACCACTCATC	alt_2169_reverse	72	96	119	101	112	97	112	84	130	98
TCCCTGCTTGTAGTTT	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCCACGCAGGTCA	alt_2169_reverse	25	45	25	29	41	26	42	28	37	33
GTGAGTGTGTTAATAT	alt_2169_reverse	9	17	12	10	14	6	18	11	13	8
GCCAATAGCACACAAA	alt_2169_reverse	16	25	27	19	24	12	27	15	24	17
CGCACTCTAGGGTCAA	alt_2169_reverse	0	2	0	2	1	4	2	2	3	3
GTTCCAGCCGGCAAGG	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTGGTTCTTGCCG	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGAGCAGCCGGAC	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
GACTACATAACTAGCA	alt_2169_reverse	40	68	58	61	59	37	70	59	79	52
TGTCGTGAGGCTAATC	alt_2169_reverse	44	43	27	19	34	44	40	33	32	24
GGGCAGGTCACACCCA	alt_2169_reverse	52	54	66	43	62	42	71	35	67	45
ACGTATGAAGCGTAAA	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTTAAGCTCTAT	alt_2169_reverse	46	48	33	47	42	38	47	33	40	24
GATCTCTCCATCTTGG	alt_2169_reverse	5	12	6	4	9	5	11	7	7	4
GTGTAGCTGTTACTTA	alt_2169_reverse	9	20	14	7	35	16	20	14	21	13
ATCACTTTCGGCGAAT	alt_2169_reverse	67	74	78	67	117	59	116	74	110	72
TACACGTATCGCTCCA	alt_2169_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGTGTACGCTATC	alt_2169_reverse	15	6	7	1	9	5	9	2	16	5
CCCGAAAGCTTAATTA	ref_2169_reverse	80	91	90	48	111	74	96	73	95	54
TTTGATCTTGCAGCAT	alt_2169_reverse	54	63	73	51	47	40	45	38	63	25
AAGGCAAAGTAATTGT	alt_2169_reverse	18	19	9	9	20	12	9	9	25	11
GCCTTTAGTCATCCAC	alt_2169_reverse	55	92	61	63	97	37	112	52	112	61
GTTAATATGGAATGTT	ref_2169_reverse	81	77	103	80	83	81	88	69	103	61
ATGTTTGTCAGATGAT	alt_2169_reverse	218	278	252	194	295	228	301	186	276	185
CGTCAATCTGTTAAGT	ref_1139_missing	79	98	105	86	92	73	120	77	111	70
GTCAGGGGTCGAAGCC	ref_1139_missing	14	48	25	20	39	29	42	17	39	19
TACTCGTCTGCAGCGT	ref_1139_missing	12	20	28	19	28	13	30	10	20	8
AGGTAATCCAGGGCAA	ref_1139_missing	27	35	29	27	39	26	45	17	30	18
AAGGCCGTCTTGGGCA	ref_1139_missing	73	116	89	81	131	65	126	56	134	65
TTAAAGCTCGCAGTTT	ref_1139_missing	11	18	19	9	20	11	16	7	8	11
TCTAGCTTCTTTGGTG	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
CTATAACCTCGATCAC	ref_1139_missing	19	40	34	22	37	20	26	17	35	19
TAATGGTTTACACCTG	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
AGCCGAGACTCGGACG	ref_1139_missing	93	153	114	108	174	123	210	100	179	86
ATCATGTTTTATGCCT	ref_1139_missing	3	5	4	3	3	7	10	7	6	8
CGGCGCAGACCGTTTT	ref_1139_missing	38	65	48	45	67	52	59	38	64	35
TGCTTTCGGTTAAATT	ref_1139_missing	21	22	23	19	40	21	41	18	32	17
GCCATCCGCTATTGTT	ref_1139_missing	7	7	10	3	16	8	17	11	21	9
GAATGTCTAGAACCGT	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
AAATGAAGTTGTGCAT	ref_1139_missing	12	34	19	16	34	18	20	13	29	19
ACATTACGAGTAGCAC	ref_1139_missing	15	31	21	13	33	26	33	19	31	29
ATCTGCTATCGTAGAT	ref_1139_missing	9	11	5	5	9	3	8	6	4	6
TGGAATACGTTCTACA	ref_1139_missing	4	14	12	6	10	7	6	7	13	10
AGTCAAGCTAAACTGT	ref_1139_missing	31	32	25	23	42	21	42	33	35	13
GCATTCGCCTGAATAT	ref_1139_missing	40	56	56	47	68	45	57	44	58	29
TGACCACGTTGATCGA	ref_1139_missing	5	16	3	8	11	8	4	3	10	4
ATTTTCTCACTGCGAC	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
CACTTTGGTCTGTACA	alt_1139_missing	22	14	18	24	15	17	14	14	28	15
TGACTAAGTCTTTCTA	ref_1139_missing	21	36	28	32	52	31	49	26	53	28
TTTGAAGTATCCCTAC	ref_1139_missing	26	22	18	22	20	20	30	20	35	17
ATAGCTTATATTGTGT	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
GTGCACAGATTATATG	ref_1139_missing	7	18	14	6	5	6	12	3	21	7
TTAAGTAAATTTCGTC	ref_1139_missing	91	155	149	106	113	74	157	68	146	75
TTCTGAGCCTCGCCTC	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
TTCCACTCCCACTTCT	ref_1139_missing	4	13	8	2	9	4	14	5	6	4
TGCGGACGGTCAACGC	ref_1139_missing	8	19	15	12	9	10	16	18	14	4
GCGTATTGGCCAAATT	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
TTTTTCTCACTGCGAC	ref_1139_missing	178	194	209	177	210	134	209	145	249	140
GACTAATAAACTATGG	ref_1139_missing	70	74	64	65	85	59	70	69	61	52
CGGCTTGGCCGTGGGT	ref_1139_missing	43	51	41	36	57	33	52	38	57	38
ATCAGTTGTGAGTACT	alt_1139_missing	45	113	57	56	71	43	109	29	105	54
TATTTTCCGTTCGAGG	ref_1139_missing	47	52	36	45	44	32	52	29	46	29
TATTGATAGTTATCAA	ref_1139_missing	22	35	31	36	43	25	36	40	34	27
TATTTCCAGGATTTTT	ref_1139_missing	30	51	35	44	37	28	30	13	41	28
ATAGGGAGTGTTTCGT	ref_1139_missing	0	0	0	0	0	0	0	0	0	0
TAACTGAGATATTGCG	ref_1139_missing	6	5	5	2	6	9	13	4	14	6
CCCATGCTGCTATCTT	ref_1139_missing	20	31	34	21	31	10	39	10	31	26
GTAAGACTTCTTTAAC	ref_1139_missing	27	53	54	32	48	36	66	41	73	32
AAATCATGGAGGAAAG	ref_1139_missing	37	42	56	47	44	38	43	38	47	44
AGCCGCGATATATGCC	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
AGAGCCAAATTGGTAT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTACTTCTCTGTT	ref_4486_upstream	134	79	140	81	64	115	96	116	79	95
GGGCTAACATCCGTAT	ref_4486_upstream	108	46	79	71	62	78	60	60	52	70
GTATGAGCTTCTATAG	ref_4486_upstream	42	26	35	27	19	44	32	35	36	31
TCGACACCATATGCGG	ref_4486_upstream	154	141	168	122	130	159	140	125	145	122
TTCCCTTCTAGTCTCC	ref_4486_upstream	180	113	201	145	127	141	120	147	152	161
ACTTTGCGGTCTTTAA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
CATCCTGTGTTTGGTA	ref_4486_upstream	23	13	19	15	12	12	18	24	13	20
CTTAATTCCGCAGCCA	ref_4486_upstream	32	24	48	26	31	36	29	38	29	25
CAACTAGGAGTACGGG	ref_4486_upstream	35	13	17	22	16	19	15	25	11	19
TGTGGATCGTATTGCC	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
GTAATTGTTCGGTGAA	ref_4486_upstream	201	113	198	170	109	183	144	168	155	152
GAGCAACTATCTACCG	ref_4486_upstream	0	2	2	3	1	2	0	1	0	3
TTGGCTTTTTCCTATA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGGGTCAGGTGAG	ref_4486_upstream	352	225	375	277	212	329	243	271	227	332
GGATAGCGTTTTATTG	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TAGATCATTCATTCCT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTTTGACACAGAC	ref_4486_upstream	52	20	52	40	24	41	34	46	18	31
GCCATTCTTCTACGTT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
ATATGGGGATTTTTGC	ref_4486_upstream	75	38	66	50	38	46	35	48	45	55
TTCATTGTGTACTTAA	ref_4486_upstream	1	2	0	0	1	5	0	1	2	0
CTCCCTTGTATAACAG	ref_4486_upstream	28	28	38	26	29	27	30	24	44	34
GACTTTTGCATCCGCC	ref_4486_upstream	50	43	55	38	48	47	33	54	33	48
TTTAGCGTCTTTCTCT	ref_4486_upstream	12	5	13	5	8	8	7	6	7	6
GTATATCGTTTTCTAG	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
CCTGACGTCTAAGCTC	ref_4486_upstream	34	52	45	22	34	16	26	26	46	24
GACAGTGGCATCTACG	ref_4486_upstream	83	51	80	56	49	47	45	61	58	57
CCGTTTTTTGTGCCCA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TTATGAATATTTGATT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTGTTTAGGATTA	ref_4486_upstream	27	27	30	18	26	17	14	25	10	34
TAGATTTCCTGTTTTG	ref_4486_upstream	30	32	37	32	27	22	25	34	25	24
ATGATCCAGGTGATGT	ref_4486_upstream	50	42	56	42	37	37	30	36	30	36
TTCTGACGTTAAATAG	ref_4486_upstream	17	14	14	17	12	8	13	17	18	7
TAATCTTATGAGCAGT	ref_4486_upstream	114	71	93	67	74	110	80	95	72	81
CAGATGGTTGAACGTT	ref_4486_upstream	73	54	94	49	52	76	57	54	51	50
GTACGCCCCCGCAGGT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGCTTCCGGCCGA	ref_4486_upstream	240	140	240	191	161	215	140	164	156	210
GTATTTAGCCGAATTT	ref_4486_upstream	53	35	73	48	39	46	54	41	40	61
TCGTTCGTCAATTCGA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TGCACGTGAGTGGACA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TTTGAACACGGCTTAT	ref_4486_upstream	57	25	68	50	27	53	43	38	41	51
GGCTGTAATGCGTTGG	ref_4486_upstream	28	28	49	26	18	31	34	21	42	40
TTTACACCGTGAGCGT	ref_4486_upstream	18	21	23	17	22	14	17	16	17	19
ACAATCTTAGTATACT	ref_4486_upstream	43	23	55	35	22	44	40	44	33	44
TATGGCTATTCTCAGT	ref_4486_upstream	29	27	41	29	33	33	26	22	27	37
TCGAACGATTATATTT	ref_4486_upstream	66	48	73	43	26	54	43	59	44	66
GGTTTTTAGCTCTCTT	ref_4486_upstream	3	4	8	3	2	6	4	3	2	3
TTGGCGCAAGGCCTTG	ref_4486_upstream	97	75	86	53	56	83	65	61	69	79
AAGCGTTCCCCCTGAT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGCCCGGTAGAGT	ref_4486_upstream	8	13	22	15	11	18	7	22	16	16
CCTCGACTCAGTCTCT	ref_4486_upstream	76	66	96	55	73	72	81	81	70	51
CACTGTACAGCGCGAT	ref_4486_upstream	76	41	79	53	54	67	60	69	62	68
TTAGTCGTAACTATTT	ref_4486_upstream	6	7	12	11	4	8	5	2	8	6
ATCCTCTGCTTCTGTA	ref_4486_upstream	58	41	68	77	47	72	41	47	55	58
TCACTACCACAGTCCA	ref_4486_upstream	2	2	1	1	0	0	1	2	3	1
GGCTTATGTTGGTGGT	ref_4486_upstream	13	13	17	11	8	10	15	9	7	15
GAGGTGTGATGTGGTC	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTCTTTGTTCGCA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTATTTAGCATCG	ref_4486_upstream	61	28	58	35	48	37	32	34	59	41
AGGCTATCCGAGCTCC	ref_4486_upstream	58	40	77	56	31	46	52	57	52	78
ACTTCGCTTCGGGAAT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTCTGTGTTATGC	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTATAGTGGTCGG	ref_4486_upstream	53	48	50	56	37	52	35	64	37	48
CCCCAAATATGTATTG	ref_4486_upstream	46	49	60	38	40	40	51	36	45	46
CGCGCATCTTCAGCGT	ref_4486_upstream	40	22	27	27	29	24	27	26	21	36
TATGGAACTAACATGC	alt_4486_upstream	456	274	494	369	294	436	339	387	303	449
CGCGGTGCACCGCATG	ref_4486_upstream	46	18	42	26	22	31	20	27	27	27
ACTAAGGCATTCCCCG	ref_4486_upstream	14	14	16	9	18	6	18	8	19	6
TTTTGTTATTTTTTAT	ref_4486_upstream	93	65	115	91	50	84	55	58	64	96
GGATAGATCTCCCAGG	ref_4486_upstream	22	17	18	21	10	13	20	14	17	24
GCCTTCTAGAACAGTT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCGTTGTCTTGTT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTCGAATTCCTCG	ref_4486_upstream	6	11	10	6	12	1	5	12	1	8
GCAGTTGTGGTGAAAG	ref_4486_upstream	19	19	32	19	13	19	17	24	20	38
GCTCGCGGAGTTCCTC	ref_4486_upstream	43	26	59	38	37	51	30	51	26	48
CTGGTTGGTTTTATCT	ref_4486_upstream	54	39	54	39	52	54	40	60	54	47
GCACGGTGTTTTAGGT	ref_4486_upstream	6	26	22	9	15	14	11	6	8	9
AGTGAACTGTAGGTTC	ref_4486_upstream	70	36	74	59	53	63	47	53	56	52
GATGCCAACGTGTGGC	ref_4486_upstream	65	43	75	38	42	53	46	36	51	47
ACCTTCGGAATCCTCC	alt_4486_upstream	1	6	5	4	5	12	8	4	2	5
CTCCCCATCAGTGTTA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGTATTCCCCTTG	ref_4486_upstream	36	25	39	19	40	43	45	21	31	34
CAAGCCGTTTCCCGGT	ref_4486_upstream	12	20	19	16	12	9	17	13	18	16
AAAGTATAAGGTAGCG	ref_4486_upstream	92	71	104	80	74	94	82	77	94	77
TTATCATTGTTGGTAT	ref_4486_upstream	5	5	9	5	5	4	0	5	2	6
GTAGGGCTTAGGGGTT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TATTGTTCTATGTTCG	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TCATGCGGCCTCAATT	ref_4486_upstream	11	8	8	5	4	8	7	2	9	13
CAGCGTCGGAATTTGT	alt_4486_upstream	206	126	226	137	169	138	162	182	158	185
AGCTTAACAGAACGCA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTCGGGTAGGGG	ref_4486_upstream	11	21	22	16	22	15	9	18	12	11
TCATAAGACGTCGCTA	ref_4486_upstream	133	107	140	111	106	114	108	126	88	137
AAACTTTCTTGCTGTA	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGCAGCTTTCAAC	ref_4486_upstream	69	29	91	65	46	71	62	68	47	77
AGCGAATCTCACCTCG	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
ATACTCGTCCTGCCAG	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
ACTATGAGTGGTGGGT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTGTCCTTTTGAA	ref_4486_upstream	33	31	38	24	22	35	27	26	26	21
CTGCTCTATGTATCTT	ref_4486_upstream	228	163	270	205	161	205	178	201	183	224
AAGTTAGCGCAGTTGC	ref_4486_upstream	35	34	53	43	27	47	37	48	31	42
ACTATCGTCAGGTTCC	ref_4486_upstream	50	28	65	36	34	46	35	41	27	49
TTTTTCACTCGGCGTA	ref_4486_upstream	7	4	9	9	8	10	8	6	5	11
AAATGTAGTCAGCAGC	ref_4486_upstream	4	8	8	2	4	5	2	4	7	4
TTGGAGCGACCGACGT	ref_4486_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCCACAATACTGT	ref_4486_upstream	81	57	81	53	58	75	69	58	87	59
AATTGCTCTGTAGCGT	ref_4486_upstream	27	17	41	26	15	25	23	26	28	20
TGGGATTTTAGAGCGT	ref_4486_upstream	375	244	515	304	295	361	335	390	267	333
GGAATCTGCATTACTC	ref_4486_upstream	214	130	217	139	130	167	138	163	163	181
TTAGGACGCCACAGAT	ref_4486_upstream	8	1	2	4	3	4	1	4	4	5
AACTAATCCCTGTTCT	ref_4486_upstream	76	60	84	57	62	61	42	63	45	51
CAAATACAGAAGCTAG	ref_4486_upstream	80	60	94	56	50	82	38	71	52	73
GTATTGTTGGACTGGT	alt_5708_new	15	33	19	12	41	12	28	16	29	11
ATTACGCCACGCGATT	alt_5708_new	60	120	63	49	127	64	146	51	137	61
ATGGGGCGTAGCGTAC	alt_5708_new	37	62	43	29	61	29	48	35	69	30
CCAGGTTACAGCGCCG	alt_5708_new	1	0	4	2	1	1	4	1	3	0
AACAGTAGAGTTTCGG	ref_5708_new	18	30	15	21	35	16	35	19	48	9
CCGCTCCCCACGGGTG	alt_5708_new	19	51	25	23	53	14	50	13	37	10
TCTTTCCGGGTGTCTA	alt_5708_new	5	9	9	3	22	2	15	1	19	4
GCGCTAGTAGAACGCT	alt_5708_new	9	22	8	5	22	7	15	7	24	7
GAGATCCAGTTTGTGT	alt_5708_new	20	50	24	25	36	28	53	13	56	21
TTGTAGAAAATGGTGT	alt_5708_new	58	109	76	68	98	71	125	64	107	52
GTGGCTCTGGCACTGT	alt_5708_new	11	25	16	14	22	10	17	4	21	7
ACTTCCTATTCATTAC	alt_5708_new	11	34	19	12	39	11	36	21	54	9
TGCACTGCTGTGCTTT	alt_5708_new	5	25	15	6	15	10	21	15	28	12
TTTATGGTCGGGACTG	alt_5708_new	0	0	0	0	0	0	0	0	0	0
CGCCTATCAGTCCAGA	alt_5708_new	32	41	19	19	44	13	43	16	33	20
CCCTTGTAAGCTACTG	alt_5708_new	0	0	0	0	0	0	0	0	0	0
GGCTCAGCAGGACAGC	alt_5708_new	23	62	29	24	52	35	53	13	66	18
GAAAAACACGGCATAC	alt_5708_new	13	37	32	19	37	12	44	21	47	25
ATGTGGGTCGAATTCG	alt_5708_new	14	29	15	26	34	12	31	15	32	18
GACATGGTCGACATTG	alt_5708_new	10	13	12	7	15	11	16	7	17	5
CATCACGTCACATTTG	alt_5708_new	0	0	0	0	0	0	0	0	0	0
CAAATAGCTACGGGCG	alt_5708_new	0	0	0	0	0	0	0	0	0	0
GTTATCACTATGTAGC	alt_5708_new	0	0	0	0	0	0	0	0	0	0
TCCAACTGGACCATGG	alt_5708_new	0	0	0	0	0	0	0	0	0	0
TTGTAACGTCCATGCA	ref_5708_new	5	6	12	8	7	6	7	6	9	8
TGGTCGCTTCAGCCTT	alt_5708_new	31	77	44	30	65	30	80	37	66	30
TAAAGACCGTTAAGTT	alt_5708_new	30	51	34	24	59	27	57	32	52	18
AATTGGGGGTTGCTCC	alt_5708_new	0	0	0	0	0	0	0	0	0	0
GGTTCCCGTCATAGCG	alt_5708_new	46	78	51	32	93	55	83	54	93	48
TTGATAATGATGCACC	alt_5708_new	0	0	0	0	0	0	0	0	0	0
GTTCTCTAGAAGCGCG	alt_5708_new	4	8	5	3	8	3	6	6	10	5
TGTACGAACGCAATGT	alt_5708_new	8	7	9	1	11	11	12	6	17	2
AGGCATGACATTCTCG	alt_5708_new	13	29	25	12	24	12	30	13	36	7
CCCGAGGGCTCAACAT	alt_5708_new	0	1	1	1	7	1	7	0	2	3
CCCTCGGTCAGGTACA	alt_5708_new	0	0	0	0	0	0	0	0	0	0
TCTGGTTTGTGACACA	alt_5708_new	3	11	4	3	10	6	10	6	13	10
GATCGGTACACCTGCG	alt_5708_new	2	15	6	3	12	4	5	6	8	3
TCACCATTTGTGCTCC	alt_5708_new	27	38	23	24	50	22	40	21	29	15
GTCAGTAGTGGGTCAT	alt_5708_new	5	28	4	14	14	4	26	8	27	2
AGCGCCCCCAATTGGC	alt_5708_new	4	4	10	6	4	5	5	7	7	1
TGGTTCAGGTTCCGGG	alt_5708_new	13	12	8	4	21	16	19	13	12	7
TCATAAGACCTGTCTG	alt_5708_new	8	36	13	13	32	8	32	13	37	11
TGTCGGTACTAAGGAA	alt_5708_new	30	50	29	19	36	24	48	21	31	26
GGAGCTGTAACCCTTC	alt_5708_new	23	40	22	25	27	12	34	21	36	18
CCATGCGAGTCCGGCT	alt_5708_new	20	33	17	7	36	15	22	16	28	12
TTACTTCTGCAAGTTC	alt_5708_new	13	37	21	21	47	36	51	12	47	16
GCGCCATCGTGAGAGG	alt_5708_new	18	44	19	11	46	14	65	12	47	7
TTGGCCGTAGAGAGTC	alt_5708_new	3	23	14	13	28	8	15	9	29	13
GTGATCGCAAACTGCG	ref_5708_new	18	34	21	21	37	16	41	17	36	19
CCATCTACACGAGACC	alt_5708_new	13	20	12	10	11	17	24	7	29	18
AGAGCCCTGCTCACGT	alt_5708_new	8	33	29	17	43	16	29	17	35	17
GGTAATTAGCGATCAT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
ATAAATTATTTACTTT	alt_5708_new	34	37	33	21	46	34	41	21	54	18
AGGTCCTTGTGATAAT	alt_5708_new	15	21	26	10	16	13	29	14	31	16
CAGATGATTTGTGTGG	alt_5708_new	0	0	0	0	2	0	3	0	2	0
GCTCAACCCCTAATGT	alt_5708_new	0	2	0	0	1	1	0	1	0	2
GCTAGCGCTGCCTATC	alt_5708_new	0	0	0	0	0	0	0	0	0	0
CAAGCATAGATGTCCC	alt_5708_new	0	1	2	1	1	0	1	1	1	0
ACCCGTAGGAACTTCG	alt_5708_new	2	6	4	2	8	1	3	3	5	2
CGGTTTCTTGGGGCTG	alt_5708_new	22	36	23	22	30	10	30	19	43	18
TTTTAGTCATCACCGC	alt_5708_new	4	6	5	7	8	6	11	5	7	2
GTGCCTGAGATTGGCC	alt_5708_new	17	41	24	16	32	18	49	10	52	13
CCTCACGTCAAGAGAC	alt_5708_new	13	16	8	7	20	9	16	6	19	5
TCGCACGATTTGAATG	alt_5708_new	10	14	14	6	15	8	13	6	19	6
TCTTTTGCTTTTAAGA	alt_5708_new	0	4	2	2	6	2	3	5	7	2
TATTTTTTCTTTTTCG	alt_5708_new	6	30	19	16	27	16	41	14	28	12
TAGTGGCTCTCAAGTA	alt_5708_new	5	8	11	5	5	1	9	4	9	2
TTATTTTTTGCTAAAT	alt_5708_new	3	9	7	5	10	6	7	4	7	2
GTGCCCCCCTATTATT	alt_5708_new	27	72	35	38	75	27	71	30	68	33
TGGCTCGGTCATTGGA	alt_5708_new	10	33	23	10	34	13	31	27	43	16
CCACTAATGTTTGCTT	alt_5708_new	44	102	54	37	104	43	95	58	105	39
GTTTCGGCAGTTCTGT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
ACACTAAGCAATGAAT	alt_5708_new	1	2	0	0	2	0	5	4	4	4
CTAAGTTACCAAATTC	alt_5708_new	0	0	0	0	0	0	0	0	0	0
TGTTAAATAGGCAGGG	alt_5708_new	10	10	7	5	20	7	17	10	16	8
CCAATGCATTCGTCAT	alt_5708_new	19	43	13	9	26	12	38	11	24	10
AATGGTAATTGAATAA	alt_5708_new	20	27	14	8	21	14	24	16	27	14
TTTAAGTTCCTCTATC	alt_5708_new	4	10	3	2	12	3	9	3	5	5
GATTCTCACTTCGATT	alt_5708_new	7	6	9	5	21	4	5	4	14	4
TGTATTGCTTTTTCTT	alt_5708_new	1	8	6	2	8	4	5	2	4	2
CTCCTCCGCTGTTGAG	alt_5708_new	2	1	1	2	4	2	2	2	2	0
ACCAACATCGCCCTCC	alt_5708_new	7	50	15	5	33	12	34	9	45	6
TCGACGGATTGCTCGG	alt_5708_new	0	7	2	1	9	3	3	4	10	1
TTCCAGAGTCTTTCCA	alt_5708_new	25	62	27	33	42	35	57	20	56	19
TCACATGTAGGTCCGG	alt_5708_new	9	15	16	9	24	12	26	17	20	12
TGGGATTCACTCCCGA	alt_5708_new	0	0	0	0	0	0	0	0	0	0
AGTAATGTCTTTGGTT	ref_5708_new	29	52	27	20	28	25	49	20	47	21
TTCCGAGTGCGCTACA	alt_5708_new	0	0	0	0	0	0	0	0	0	0
CACTTTGGCGACCTAG	alt_5708_new	3	12	4	4	11	2	12	6	11	1
GTTCCATATCTCAGAT	alt_5708_new	14	14	12	6	35	13	30	15	34	5
GGGTACAAGCGGCGCT	alt_5708_new	9	23	12	10	15	5	11	8	10	10
TTCTTATCCTAGTAAC	alt_5708_new	0	0	0	0	0	0	0	0	0	0
TCTTTTTATATGCTTC	ref_5708_new	24	25	34	15	36	20	52	21	40	18
CCCGACCTGGTTCAGA	alt_5708_new	7	50	14	16	37	14	46	13	36	7
CTTCACGGACCACCGC	alt_5708_new	0	0	0	0	2	0	0	0	0	0
CTACATCACTCGGTAG	alt_5708_new	2	10	6	2	8	6	7	5	12	2
GGGGCATAGTGGTGTT	alt_5708_new	6	19	15	11	13	12	27	8	18	8
TGTGAGTTTTTGTGAA	alt_5708_new	9	10	5	6	18	6	14	7	6	2
GTAAACTCACCCGGCC	alt_5708_new	2	49	6	7	46	7	43	4	52	4
TGTTTAAGTGGCTCGA	ref_5708_new	80	156	87	84	164	69	154	75	178	59
ACCCCTATTCAACCTC	alt_5708_new	7	4	4	5	8	3	10	4	13	1
CGGCCTCTGCTTGTTT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
GACGGTGCTACACCAA	alt_5708_new	20	29	12	16	29	8	30	10	25	4
GTTAGCACTTCCGATG	alt_5708_new	16	34	24	14	37	11	34	14	34	15
CTTCCCGCTTCAGGCG	alt_5708_new	0	0	0	0	0	0	0	0	0	0
ACGAGCAGCTCATTTT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
CGGGTTCTACGGAAGG	alt_5708_new	0	0	0	0	0	0	0	0	0	0
GGTAAGGTCTAGTCAG	alt_5708_new	12	33	14	16	29	13	26	17	24	17
GATAACCCCTGCCCAT	alt_5708_new	8	14	13	9	24	10	20	12	25	4
GGCATTCTATTCCGTT	alt_5708_new	0	0	0	0	0	0	2	0	0	0
AGCGGTCGTTATCGTG	alt_5708_new	5	8	2	5	9	1	14	1	11	1
TTGGGCGTATCATGGC	ref_5708_new	51	109	78	61	98	59	122	56	107	50
TCAGCGCTCCGAGTTC	alt_5708_new	0	5	2	2	4	2	6	2	3	2
CCTCCAACACTGGGGA	alt_5708_new	19	46	29	16	30	16	35	16	42	18
ACTGGGCTCCAAGGAG	alt_5708_new	5	10	6	6	7	3	9	9	7	1
TTAATCGACCTTCCAT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
ATCATGATAACGATCT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
ATGTACAGGGGTCCCT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
TCCGCTTATGCTGTTC	alt_5708_new	9	25	11	10	31	16	25	6	27	10
GACATATGAGGTTAAA	alt_5708_new	2	9	3	1	4	4	4	1	3	1
GTTTTCTGGGCTTGTC	alt_5708_new	19	27	14	24	38	13	39	11	30	12
GCCAGCTTTAATATCT	alt_5708_new	0	1	0	0	0	0	0	0	1	0
TGTTCATGTCTGAAAG	ref_5708_new	8	11	10	6	9	9	27	10	16	3
TCGATTTGATCACGCT	alt_5708_new	0	0	0	0	0	0	0	0	0	0
AGCTCGAGCGTTTATG	alt_5708_new	16	35	21	21	23	23	36	14	50	9
GACTTGCAGGTACCGG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATGAGTCAGTGGTTCG	alt_6102_new	18	56	21	13	47	20	64	24	64	21
TCTGATACCACCTATA	alt_6102_new	18	65	29	22	74	19	80	24	69	29
CTTATTTTTACCTGCT	alt_6102_new	4	5	2	2	11	6	7	1	9	2
TCAGTAAGCTATCGAG	alt_6102_new	23	39	22	22	58	16	59	23	65	26
TTAACACCCGTTTTTA	alt_6102_new	30	97	22	34	91	32	88	35	106	36
CCATTCTTGTCCTCCT	alt_6102_new	12	40	28	19	41	23	44	18	39	9
GGGAAGATTAGTTACG	alt_6102_new	7	14	4	6	11	1	10	8	15	6
TGCCTAAGGACCTAAC	alt_6102_new	23	48	25	14	42	16	54	18	56	21
GTGTAGAGCTAATCCA	alt_6102_new	49	89	64	41	121	42	105	39	96	40
CCACGCATCAAGAAGC	alt_6102_new	10	13	10	8	9	3	25	6	14	5
AACCGATCGTCTTAGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TGTGCTGGGGAGATTG	alt_6102_new	19	34	17	15	29	12	43	6	28	11
AGTAAGAAACAGGCTG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATTGATGCTTTGAGTC	alt_6102_new	12	10	5	11	19	8	17	7	12	7
TTTTACAGTTAGACAA	alt_6102_new	20	51	21	16	74	15	77	21	62	14
CAAAAGGGCCTTCAAA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CTTTTTCTGCACTAAA	alt_6102_new	8	19	9	12	25	12	18	8	35	11
GAACTCGGCACGATAC	alt_6102_new	21	63	34	35	81	28	75	35	58	15
GATCAAATTCAGCGAG	alt_6102_new	22	39	27	20	38	23	33	14	55	19
ATCACGCATTCTCGGT	alt_6102_new	16	24	22	12	29	12	36	10	24	11
TGCCAGCAATGAGTCA	alt_6102_new	12	51	17	27	45	19	40	13	63	17
CTGGGAAGCCCGCTCT	alt_6102_new	12	20	17	8	12	13	15	12	28	8
TCTAGAAACTCGTACA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TTGTATCGCTTACTCA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ACCTAACTAGATCTTA	alt_6102_new	25	50	31	30	74	28	40	19	56	21
GGCGAATCTTCGATAG	alt_6102_new	80	174	95	75	190	89	154	76	184	68
GATTTATGTAGTAACA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GATCATCTAATTCGAT	alt_6102_new	3	7	3	0	3	0	6	2	3	2
TGTATCTAGATCGGAG	alt_6102_new	28	83	41	29	77	29	77	24	88	30
GGCGAACCCGAGATCT	alt_6102_new	32	29	32	19	59	21	48	18	54	12
TTGAAGCACCAAGGCT	alt_6102_new	29	53	36	29	85	26	87	29	96	29
CCTGTTAAAATTCAGG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CCAGCTGCATACATCC	alt_6102_new	3	70	9	8	79	8	76	12	83	4
GCGCTTCTATACTTCT	alt_6102_new	19	57	15	26	38	25	43	16	52	20
ACAGGTAGATCTTGGG	alt_6102_new	22	44	31	26	58	21	65	26	68	18
TTATGTGGCATTTTCA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CCTGATTGTATACCGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CCGGCACTCCACTTTA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CTACAGCAGACCTGTT	alt_6102_new	0	4	1	0	5	1	4	2	8	0
GTCGGTGCCGTTTGCT	alt_6102_new	1	2	6	5	4	3	11	4	5	6
CGCCGCTCCAGCAATC	alt_6102_new	7	20	5	7	27	4	27	7	20	4
AGATGGCCCTTTCGGG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CTTAATATTAGAAACT	alt_6102_new	6	24	7	7	17	6	29	9	15	7
CTCGTTCAGTTTTGGA	alt_6102_new	134	325	172	115	299	144	337	114	369	121
TCATGTTATGCGCCGA	alt_6102_new	9	29	4	14	27	1	36	13	26	7
GGATGAAATTTGCACG	alt_6102_new	83	230	118	96	215	113	246	76	246	104
ATATTTGTATAGTGCA	alt_6102_new	15	41	11	15	32	7	37	19	42	19
ATTGAGTTTCGTGGCA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TATTCAAGCCACCCGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TCCATTGATCTGGGCT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATCCTCGCGCATCCTT	alt_6102_new	3	3	1	3	0	1	4	1	5	2
TCGGCCATCTACTACC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATCCGGAAACTGGTTA	alt_6102_new	27	78	37	38	65	25	63	26	51	21
CGCAGACGGGCGGGTT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GCCTGCAGAAGGCCGA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CTAAGGGCATTACGTG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GTACCTGAACACACTT	alt_6102_new	18	36	13	23	28	15	32	16	46	16
GTGCTACTACGTGTAC	alt_6102_new	16	86	35	27	94	25	74	24	80	19
TCGCCTTTCTACAATT	alt_6102_new	15	52	20	11	41	12	41	15	25	17
TCCTCAAGTCCGGCAT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TAGTCATCTGGTTCGC	alt_6102_new	13	32	22	8	28	19	33	12	41	9
GTTTTAGCCGACTATA	alt_6102_new	6	15	10	3	12	6	7	7	21	4
GACAGCGGTCTAGTTC	alt_6102_new	9	26	10	9	28	7	23	7	21	14
TTCTTCTCGGCGTGAA	alt_6102_new	11	12	5	6	12	7	16	6	13	11
GGACTGCTTATATCGG	alt_6102_new	12	16	9	16	18	3	28	11	24	9
TTTTCCCCCTATCGGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TTAAGAACAATGCGTC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TAAATTTTTGCTGGCG	alt_6102_new	5	13	10	10	14	4	13	14	19	13
CTAAGCGCGTCTAGTT	alt_6102_new	6	23	11	11	28	12	25	13	27	9
AGTCAATGTGTGACAA	alt_6102_new	0	3	1	0	0	0	0	1	0	0
TTCTTGAAATGTTGGA	alt_6102_new	1	2	5	1	5	2	9	2	10	3
CGTGCAGGCCAAAGTT	alt_6102_new	1	11	3	4	3	4	6	0	13	0
TCTTTGTGACCACTAC	alt_6102_new	1	3	0	1	1	1	2	2	4	1
CTGCTTCTCCCAGGCC	alt_6102_new	12	28	10	8	29	12	21	8	30	9
TGCGAAGTCCCGTAGG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GGGTACCCTCATCTAA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
AACGGTGCGATAACTG	alt_6102_new	0	1	0	0	3	1	9	1	2	1
TATCCGTTATGATTTA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ACAAGTAAGGAATGTG	alt_6102_new	9	26	18	12	15	15	26	3	24	9
GCGGCCTACTATTTTA	alt_6102_new	5	28	4	5	28	4	34	1	31	7
TTGGCTCCCTCAGAGA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
AAGTGGGTTCATCAGG	alt_6102_new	9	26	5	8	9	11	18	13	13	5
CATATATTGACCTCCT	alt_6102_new	18	47	32	20	53	15	55	16	37	15
GAATCAACCATGGCTC	alt_6102_new	5	12	0	8	3	5	8	5	14	3
CGCTACCTCATTGGAA	alt_6102_new	3	37	16	10	29	8	35	6	30	8
ATGCATGCCGGCCCCA	alt_6102_new	25	54	29	33	53	20	48	22	48	17
TCTCGCGGTGACAATG	alt_6102_new	4	18	5	4	19	6	16	3	10	6
TCGGTACGAGGTAAAC	alt_6102_new	5	6	7	7	17	2	8	2	14	6
TCTCTGTTAGGGTATA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TTTTAAGTACCGAGTA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TAATGTCGCATTCGAT	alt_6102_new	13	40	33	23	38	24	37	10	40	20
CTCTTTTGGATCACTT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TTACACATCTCGTCTA	alt_6102_new	9	20	6	6	28	14	31	6	30	8
CACTTGGGTCCGTATG	alt_6102_new	36	103	32	35	74	30	92	22	99	38
GATTGCGTTCTGGAAT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CTTAGTGTTTTGTGTG	alt_6102_new	1	8	6	5	4	3	10	0	7	4
TGGCAATTTTTGGCTG	alt_6102_new	26	47	26	19	34	25	37	10	49	11
GCACCCCCAGCTGTTG	alt_6102_new	26	48	30	28	78	24	55	26	45	10
CTACGAGCTCATTTGC	alt_6102_new	33	60	33	33	65	27	57	16	71	22
AGGTATACCCGCTCGG	alt_6102_new	5	16	6	11	21	10	21	4	27	5
TTGACCACCCGGTGAA	alt_6102_new	6	15	4	11	10	9	4	2	14	2
ATCACGTAGCTACTTG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GACGATTGAAATTCTA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TGGGTCCACTGTCCTG	alt_6102_new	28	68	39	19	76	23	83	33	68	26
GGAGTCCTTAAGTGCT	alt_6102_new	12	12	8	11	21	9	24	12	25	5
TCTTTTGAGCTCCACA	alt_6102_new	91	134	105	75	184	92	178	65	176	68
TCTTCATCCCTACCAT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATCGCTGCTTCCCATC	alt_6102_new	1	9	3	6	7	1	13	2	5	1
GTCAGGTCTTTGTAAA	alt_6102_new	9	18	9	10	24	10	29	6	36	9
TTACCATTTAGATTCG	alt_6102_new	19	52	25	35	47	25	55	27	58	19
GAATTGAGGACGGGGC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TAGGGAGCATTTATCC	alt_6102_new	25	94	48	29	94	35	106	42	89	38
ATATGGCAGTCCCGCT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TAAGTTTCTTCCGTAA	alt_6102_new	5	9	7	6	11	0	15	6	6	2
CCTCGATCTGCGCGTT	alt_6102_new	7	7	4	4	12	1	9	3	12	3
GGCTTTAGTAGAGTCT	alt_6102_new	5	6	5	2	6	4	2	4	5	6
AATGGCTGGATCACAG	alt_6102_new	18	69	26	27	42	26	55	23	53	20
CCGTTTATGTATTCAT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ACGTTAATCGTGTAGG	alt_6102_new	25	46	31	25	56	26	42	25	42	17
ACCTCGGACATTCTAC	alt_6102_new	5	13	10	6	20	5	14	4	26	5
CATCGTTTCAAGTGGG	alt_6102_new	1	3	0	0	2	1	0	3	3	2
GTTACTTGAGATTCTC	alt_6102_new	5	9	3	2	7	2	18	3	8	8
TGATCGCTGAGAAGTT	alt_6102_new	8	15	7	4	15	7	11	6	18	6
CTGCTTCTCCCAGCCG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
AGTTCTATAGCCGCGC	alt_6102_new	7	20	11	11	23	10	19	9	20	7
TTTACCCTAGTCCGGC	alt_6102_new	12	28	15	12	24	12	18	5	21	11
AGGGATGATTCAGTGG	alt_6102_new	9	18	7	12	33	5	31	12	27	14
GCGTGCCTCGAATTAA	alt_6102_new	1	8	5	3	6	3	3	1	5	4
CCACCTCGGCAGCATT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TAGTCTACTTCACGCA	alt_6102_new	1	5	5	2	4	1	9	1	7	2
GATAGCGAATGTATGG	alt_6102_new	13	18	14	14	20	6	22	8	26	13
CGTGTTTACGCCGCCC	alt_6102_new	6	16	6	5	5	8	6	2	11	4
TCTGCCTGATCCCACG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATCCAGAAGCCTGGCG	alt_6102_new	46	144	49	49	132	38	152	55	149	43
TTCCCCGCAGATTCAT	alt_6102_new	1	11	1	0	10	0	5	1	13	1
TGCAGGTGACCCCTCA	alt_6102_new	1	2	0	1	4	2	2	0	6	0
TATGAACTATGAAATT	alt_6102_new	17	38	14	11	41	30	36	14	52	11
GTGGATGGGGGCGCGC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TCGCTACCTGCCTTAT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TGACTTGTATTGCTAC	alt_6102_new	21	38	15	19	50	19	37	13	37	14
GCTCTTCGTAACAATT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CCCACTTTTGGGGGCC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GACCACTTATTAATAC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TACTCGTTTTGTGCGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TGTTTTAGAATGGGCC	alt_6102_new	33	59	45	35	61	34	82	31	80	33
CTCATCTTGTTTAGTT	alt_6102_new	17	39	26	26	37	16	48	17	51	13
TGTCTAGGTTACTTAT	alt_6102_new	32	110	54	54	167	43	129	47	129	47
TAACACGATGATATCG	alt_6102_new	19	43	27	21	63	15	68	20	54	16
GTGAATGGCAGAGCTT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GTCGGTATCGTGTTGT	alt_6102_new	1	12	4	0	5	4	13	3	11	10
TTTTTTAGCTTTGTTT	alt_6102_new	2	6	0	1	3	5	10	2	11	2
CATCTCGTAGGCCCAA	alt_6102_new	8	17	13	2	15	3	12	8	21	5
CGATGTTGCTATTTGC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TTATAGAATCAAACTA	alt_6102_new	0	0	0	0	0	0	0	0	0	0
TACTCGCAGAAGCCGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CTGGACTGAATTTAGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ACCTGCTGAGGCTGAA	alt_6102_new	18	23	7	6	25	10	24	12	27	14
CGGATTCATCGTTTTG	alt_6102_new	2	7	0	1	1	1	6	1	3	3
GCTCCGAAAGGGAATC	alt_6102_new	5	16	5	8	23	8	25	4	31	5
TTTCTTTATAATCGAG	alt_6102_new	5	14	14	0	7	6	5	2	9	5
ACAACGGAACCCATTA	alt_6102_new	3	9	3	2	14	1	8	9	7	3
TTTAGACATTTCCACT	alt_6102_new	40	85	42	42	90	48	118	40	121	41
CGATTTCCCTCTTATG	alt_6102_new	1	12	5	3	6	4	16	3	14	2
TCCTGTATGTAGAAGT	alt_6102_new	84	171	72	85	195	75	191	70	166	69
TACGGCCCTGTTGTTC	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATATGCCATATGGTGT	alt_6102_new	19	37	18	17	48	14	33	15	40	14
TAGCGGTTTTAATTAT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
ATTCGTGGTCGGGTCC	alt_6102_new	4	17	6	4	4	2	11	6	8	3
ATTTCGACGGGCCGTG	alt_6102_new	9	30	10	6	37	9	18	4	18	3
AGGTTGCGTCTGATGG	alt_6102_new	55	137	81	63	161	95	151	57	136	57
CCTAGACACCAGTTGG	alt_6102_new	0	0	0	0	0	0	0	0	0	0
CCTAGGACCAGAAAGT	alt_6102_new	0	0	0	0	0	0	0	0	0	0
GGCGTAGGTTAGGACC	alt_6102_new	2	1	0	0	4	1	0	1	2	4
GCCTGCTGTTATTCGT	alt_6102_new	14	30	11	20	46	14	37	14	31	12
TTATTCGTTCAGGTAA	alt_6102_new	12	23	14	17	26	8	31	10	29	11
TAGCTGTATCTGAACC	alt_3966_RC	0	2	2	0	3	0	3	0	4	0
TTAACGACCCACCCGT	ref_3966_RC	20	36	30	29	33	30	41	31	42	27
TCCTACTCTACTCGGC	alt_3966_RC	13	19	25	21	23	15	16	13	28	15
TTGATCGTACTACATA	alt_3966_RC	303	437	331	287	405	314	483	280	472	282
GACAGTAAAACTTTAA	alt_3966_RC	10	13	20	13	13	9	19	13	22	12
CAATGAACCCGTGTTG	alt_3966_RC	11	23	26	20	26	24	23	22	34	15
AGATCCTCCTCTACAT	ref_3966_RC	131	148	124	104	137	119	136	112	124	99
TCTTTTTCTTACATGG	alt_3966_RC	36	44	34	33	48	18	38	33	42	29
CGTGCTAAACCATAGC	alt_3966_RC	81	113	85	90	128	80	136	76	119	71
AGTTATGACGACGAAG	alt_3966_RC	0	0	0	0	0	0	0	0	0	0
GGGGTACCTAAGACTC	alt_3966_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCCATAATTGTT	alt_3966_RC	22	39	34	30	41	36	37	21	44	22
CGCTGTCCTGGGATGC	alt_3966_RC	4	1	2	4	5	2	5	3	4	1
GATGCCCCGTGTAATA	alt_3966_RC	0	0	0	0	0	0	0	0	0	0
CGCGTTTCTTATGACC	alt_3966_RC	0	0	0	0	0	0	0	0	0	0
AGAACGTCGCACCACG	alt_3966_RC	22	29	29	13	24	20	13	17	26	31
GTGATTTAAGCATAGG	alt_3966_RC	32	50	37	30	76	35	48	25	72	30
AGTGTACGAGATCTGC	alt_3966_RC	20	12	23	7	17	11	17	11	20	19
TCTCCACTGCAGTTAG	alt_3966_RC	21	50	28	31	53	26	56	24	68	20
CTATTTAGCCGGGAAC	alt_3966_RC	5	19	10	9	12	5	25	8	14	16
TCGTGCGCCTTCCTTA	alt_3966_RC	0	0	0	0	0	0	0	0	0	0
AACGCTTTGTCTCATC	alt_3966_RC	20	32	14	16	15	10	23	13	23	7
TGGCAGGAACCCCGCC	alt_3966_RC	29	31	20	41	38	35	46	22	41	18
ACAAACACTCTAAAAT	alt_3966_RC	2	4	6	8	2	1	4	7	1	1
CCAGTATCATCTATAG	alt_3966_RC	9	13	10	9	24	7	25	15	17	8
CCTCGACTCACACGTT	alt_3966_RC	167	299	163	125	281	138	257	128	265	107
TGTGCATAACTTGTAG	alt_3966_RC	0	0	0	0	0	0	0	0	0	0
TTACTCTTTCCCCCCG	alt_3966_RC	1	8	0	0	6	3	9	0	12	1
GTGTATTGTAGAGCCC	alt_3966_RC	31	69	57	35	61	40	73	41	54	45
TCTGTACCACTGTTGG	alt_3966_RC	0	0	0	0	0	0	0	0	0	0
ACGACAAGCGTTTGTC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGCTTGCATCACC	alt_2205_reverse	1	1	2	2	0	0	6	0	3	1
CTGGACTGTACGCCCG	alt_2205_reverse	4	5	7	3	12	4	11	2	11	1
AAACCCGTTATGATAT	alt_2205_reverse	59	87	79	70	105	61	89	54	105	56
CCTCCCCTAGGGAGAG	alt_2205_reverse	6	3	2	1	1	6	4	5	3	5
TGCATCTTCTAAGCCT	ref_2205_reverse	11	25	23	10	34	22	29	11	27	8
GCATTCCGATGCACAT	alt_2205_reverse	6	10	5	5	8	7	10	4	14	11
ATCATCTCATGTATAG	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTCTAATACCCGTCTC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
AGGATGTGGGTGAACC	alt_2205_reverse	8	28	23	23	32	14	32	17	29	16
GGGTGACGTACTCCGA	alt_2205_reverse	5	5	4	2	8	1	6	2	5	4
TCCCCTGGTTGGCTTC	alt_2205_reverse	0	4	0	2	5	2	7	4	5	2
GAGATTTTCGGCGTGA	alt_2205_reverse	1	0	0	0	0	0	0	0	0	1
CATAACAGGTTTGGTT	alt_2205_reverse	11	19	13	12	19	18	23	8	20	8
AGCACATGATGATGGT	alt_2205_reverse	4	8	8	12	14	2	7	3	11	4
TTGTTGATGAAATTCT	alt_2205_reverse	29	57	28	42	38	28	48	23	34	37
GCAGCGGTTCTTGTAG	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
CACCCGCCTCTGGGAG	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTAACGGGTACGT	alt_2205_reverse	7	18	9	4	4	6	14	5	14	4
TCATGCGTAAATCGGC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
CGACTCTTAGGCGTCG	alt_2205_reverse	34	79	55	32	79	48	69	41	75	30
CACAAGATCCGATAGC	alt_2205_reverse	3	8	10	6	4	5	8	3	15	4
CAGGCGATAACAATAC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCTTAGAGAGAGC	ref_2205_reverse	32	37	24	27	41	25	49	29	45	23
GGCGATTCGCTTGATA	alt_2205_reverse	397	544	437	379	551	373	577	361	621	370
CCTTTAGGGGTAACTC	alt_2205_reverse	6	3	0	5	7	3	7	2	9	5
GGCTATTTGAAGGGCC	alt_2205_reverse	18	25	14	15	27	11	25	13	24	11
ACGGAATCCCGTTATT	alt_2205_reverse	30	56	35	43	68	32	54	30	68	30
GGTGTTGCCTGTGGAA	alt_2205_reverse	53	87	55	46	99	58	86	55	74	40
GTTGTTCTTTGTGTAG	alt_2205_reverse	17	28	15	12	21	15	23	12	31	18
TCTTTGCCGTTATGGA	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTACGAGCATACCAGG	alt_2205_reverse	37	66	46	30	72	35	55	28	68	41
TGAAGCATTAACGGAC	alt_2205_reverse	4	12	15	12	14	7	12	12	19	5
CAGCGAAAAGGACATC	alt_2205_reverse	14	17	17	13	13	9	14	8	27	6
CCGTAGGCTTTGTGCT	alt_2205_reverse	11	11	4	6	7	2	11	1	10	3
CCCAGTCTCGCTTGTC	ref_2205_reverse	31	59	28	29	60	27	66	24	67	37
CGCTTTAGAGAAAGTG	alt_2205_reverse	36	45	39	34	62	35	64	33	59	29
ACTGATAACCGTACAA	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
AGGATTAATGCGGGAT	ref_2205_reverse	7	19	8	7	10	11	13	11	12	9
TACATCAAGAAGTCAC	ref_2205_reverse	16	17	21	15	19	10	30	11	26	10
TAATGCACCTCTTTGG	alt_2205_reverse	1	9	4	3	9	8	6	3	15	6
GTTCCGGAGCTCCTGC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TTTGAGGTGACTTTGC	alt_2205_reverse	16	23	19	15	31	11	20	12	17	6
TTTTTATTATCTAACG	alt_2205_reverse	22	54	34	24	54	34	52	32	52	27
GTAACTTGTCGGTTAT	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTTTTTTACTCCA	ref_2205_reverse	6	5	4	1	5	4	2	3	5	2
ATGCCAGGTCTGCCGG	alt_2205_reverse	13	23	21	20	15	12	25	10	18	11
GTTTACGGAAACGGTT	alt_2205_reverse	1	12	5	3	12	4	7	6	7	3
CAAGATGAATAGTATC	alt_2205_reverse	3	2	4	3	4	4	6	4	6	3
TTTATTGCAACCTAGC	alt_2205_reverse	3	12	6	6	8	8	9	3	13	4
TCGATCTGGTATTTAG	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCTTTCTAAGGAT	alt_2205_reverse	11	16	20	9	21	13	17	13	29	8
TGTTCGCGATATAACG	alt_2205_reverse	5	13	9	7	23	5	11	5	12	2
GATATGAAACTTGAAC	alt_2205_reverse	10	22	4	6	17	8	20	3	12	6
AACGTTTTGCTTTAAA	alt_2205_reverse	39	63	35	42	77	35	82	27	77	39
ATGATCAATTCGGCTC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTTGCGCTTTGAG	alt_2205_reverse	34	57	35	25	46	24	58	26	68	28
GGTTAACCCCTCCCGT	alt_2205_reverse	79	116	77	88	108	53	86	71	101	52
CTTGGGGTCACCACGC	alt_2205_reverse	10	6	13	16	24	8	10	6	24	9
TTCCTTTTAGTTATTC	alt_2205_reverse	2	2	1	2	2	0	3	0	3	0
AGGCGGACCGATGTTA	alt_2205_reverse	10	11	13	10	15	6	10	17	24	7
GTGTTTATTTTCGCTT	alt_2205_reverse	25	32	32	11	26	27	31	27	42	26
ACTGGTTTTAGTGGAA	alt_2205_reverse	37	47	33	26	51	35	53	29	62	40
ACGTTTTTAATGAGTA	alt_2205_reverse	29	44	31	28	41	18	59	17	40	24
TCGTTATATGTTTGAG	alt_2205_reverse	11	33	19	14	24	16	33	13	24	16
GGCGGGAGGCGGTCAG	alt_2205_reverse	10	15	16	8	18	9	10	12	15	6
CAGCGCAGCGTATCAT	alt_2205_reverse	9	23	3	11	21	5	18	6	22	6
ACGTCAGTGCACACAT	alt_2205_reverse	0	4	1	2	3	2	1	0	3	1
GCTGACGCAGGCACCG	alt_2205_reverse	39	76	58	51	99	40	76	52	66	50
TTGCCTTGTCTGAGCG	ref_2205_reverse	75	127	90	84	139	87	170	76	147	56
TGCTCCTCGATTAGAT	alt_2205_reverse	6	9	7	7	15	8	12	3	16	9
GAGGTTCCCCAATTTG	ref_2205_reverse	20	35	31	22	42	22	34	23	43	20
TCAAAGGTCGCACGTG	alt_2205_reverse	13	21	17	8	14	13	37	9	26	7
TGTATAAGGACTGACT	alt_2205_reverse	31	46	37	28	54	22	40	19	47	20
AGTCGAGCATTCTCTC	alt_2205_reverse	17	23	21	15	32	21	35	20	30	10
TTATTGAACTTGTGCT	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCTTTGGAATTCG	alt_2205_reverse	3	8	1	1	2	0	9	0	10	2
CTTTACTTTGATGGAG	alt_2205_reverse	30	53	37	33	81	21	63	35	61	27
TTGTTCAATCTTTGTG	alt_2205_reverse	2	6	7	12	10	11	12	6	10	6
GCTCTATGTCGCATCA	alt_2205_reverse	23	22	21	16	21	12	34	21	23	23
CGCTACGCCCCCGGGT	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTTTTTTGAGGT	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAACGTACTCTAA	alt_2205_reverse	3	5	9	8	7	1	8	4	8	4
AGTGCGTATGGCTAAA	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTTATCTTTGCTT	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTCTCCCCATGC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCATGCTTCCGAC	alt_2205_reverse	16	14	5	6	10	11	12	12	6	11
GAGTTTCCGCCATCCT	alt_2205_reverse	14	18	14	13	15	13	19	15	25	11
CAGACTATGACGTGAA	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTACATTGTTAACTTA	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGCTGAGCTGATT	alt_2205_reverse	8	10	18	18	16	10	19	13	14	12
TCTATATTAATTTCTG	alt_2205_reverse	0	0	2	0	0	0	0	0	2	0
CCTAGTGACTCTACTA	alt_2205_reverse	1	3	2	0	1	0	1	0	2	1
TTGCTGCTCTATGAAG	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGCTTTGTATTG	alt_2205_reverse	18	39	35	24	41	16	39	20	43	21
TCGTTTGAACTACGTC	alt_2205_reverse	12	33	22	14	39	29	28	22	35	18
TCCTTAGCATCATGAT	alt_2205_reverse	17	33	18	22	19	28	41	24	29	21
CCGTTTATCTCGTGCT	alt_2205_reverse	6	27	9	5	16	3	26	12	22	7
CTCGCCCATTTACGGT	alt_2205_reverse	21	30	30	23	34	19	28	18	31	15
GTTGTCTAGGATAGAA	alt_2205_reverse	33	51	35	34	58	33	47	26	65	35
TCTTGTTGTCTGCCCG	alt_2205_reverse	30	48	37	22	43	28	42	24	46	32
TGTATATATGGGGTGC	alt_2205_reverse	30	35	26	16	27	16	35	18	42	26
TTCAGGTCCGGGTCTT	alt_2205_reverse	16	27	15	12	28	14	29	28	29	13
GGTGGGAGCATTGGAC	alt_2205_reverse	0	0	0	0	0	0	0	0	0	0
AAAGACTAATCTACGC	alt_2205_reverse	33	74	35	48	65	31	68	43	77	39
CATAGTTCCATTAGAG	alt_2205_reverse	24	53	29	29	51	27	64	22	44	31
TTGTCAAATAGTGCCA	alt_2205_reverse	25	47	24	25	38	9	50	22	48	27
CCGATTGAGGTGGACG	alt_2205_reverse	31	51	43	33	53	29	54	39	70	21
CCCATCGTGGGCCAGT	alt_2205_reverse	145	268	159	147	246	159	253	134	247	116
GTTCATAACTCTTCTC	alt_2205_reverse	104	125	97	98	126	82	119	66	139	71
TCTTGTTAGCTGCTGA	alt_2205_reverse	107	158	142	98	149	109	182	109	188	105
TATTGTCTGCAGATGG	alt_2205_reverse	30	57	30	31	68	34	61	31	66	29
GCGGCTCTCCCATTTC	alt_2205_reverse	9	23	11	13	11	7	25	7	19	3
TCGGAATAATGGTTTC	alt_2205_reverse	12	11	23	11	18	16	33	14	24	8
ACTCTCGGACTGTCTA	alt_2205_reverse	13	46	18	22	30	24	46	20	39	17
GGCAATTTCATTTCGC	alt_2205_reverse	13	22	15	12	20	19	22	15	14	10
TCTTGTACCACTTCGT	alt_2205_reverse	23	35	21	22	53	21	59	16	73	21
TATCCTCTGATTCTAA	alt_2205_reverse	35	64	37	39	53	36	60	44	74	32
GTAGTTCTCCCTATGT	alt_2205_reverse	29	56	24	18	43	24	49	13	59	13
ACGTGGGCTATTTCGG	alt_2205_reverse	7	10	6	3	9	3	12	3	18	2
CATTTTGGGCAAGATC	alt_5961_new	5	11	10	6	12	5	10	4	15	1
CCTCTCAACTTTACAT	alt_5961_new	4	33	7	4	24	3	34	3	29	4
ATATGGAGTAGCTGCT	alt_5961_new	5	13	12	2	6	5	7	9	11	6
CGGGCTCGTTACTATA	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GTCCGGCGTTTCATTG	alt_5961_new	27	39	27	12	59	25	36	17	48	23
ATTCTCCAGGATAACT	alt_5961_new	3	10	4	7	8	4	7	3	5	1
CGGCCTGCCCTGTGTT	alt_5961_new	10	17	11	6	7	4	21	5	13	5
CAATATCGCGTCCTGT	alt_5961_new	5	14	4	11	6	7	15	12	22	3
TATACCCCTCGTCACG	alt_5961_new	28	70	40	28	69	23	78	29	88	31
CTTACAGGGACCCTTT	alt_5961_new	14	32	21	23	29	19	38	20	33	12
GTATTGAACAATGGGG	alt_5961_new	11	8	6	9	9	6	12	6	18	9
TGGATGTCCCAATGTT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CACGCTGCATCCCAAC	alt_5961_new	10	34	19	29	41	19	35	16	34	15
TGAAACCCGTTGCTTC	alt_5961_new	0	0	1	0	0	0	0	0	0	0
TTGTTCAAAACGTTAG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
ATTCAGTACACCGTAG	alt_5961_new	41	98	56	46	96	35	84	39	95	44
CTTTCTTCGGCCGGCG	alt_5961_new	20	37	10	11	29	19	25	18	29	16
TACGGGACGTGGCTTT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
ATGCATATATCAAGTC	alt_5961_new	9	19	14	11	28	20	25	7	24	8
AGCGAGGCACCCTGGA	alt_5961_new	8	7	17	11	7	6	13	12	7	5
ATCCCCTGTATGTTTT	alt_5961_new	4	5	2	3	6	1	11	0	9	5
TCGCTGCTTACAGGAG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GCACGTGTACTCTACA	alt_5961_new	20	46	32	20	39	23	45	20	36	23
AGTTTTATTTCGTCTT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
AGGGGTCTTGGATAAC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
ATGCACGTCTATTTGC	alt_5961_new	4	1	0	0	5	0	4	0	3	3
TGGAAAATGCGGGAAC	alt_5961_new	25	34	21	38	42	23	50	24	43	20
CCTTTCTACAACGCCT	alt_5961_new	29	59	26	29	71	19	58	24	55	28
GCGACCCTAACGTGCG	alt_5961_new	41	69	47	40	64	34	73	29	64	36
CCCTGTATGTAACTGT	alt_5961_new	9	32	16	24	56	12	55	11	66	21
GGATAATGAGTTTATG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CTGAGAGCTGGATCCC	alt_5961_new	0	4	2	5	3	7	7	0	4	1
GCATGGATATCCCAGG	alt_5961_new	42	59	32	49	70	38	62	39	73	32
GTAGACCGGCGTTGTA	alt_5961_new	15	13	14	9	20	12	23	3	27	11
CCTGTTGTTGGACAAT	alt_5961_new	0	2	2	0	2	1	4	0	1	2
ACGGTACTGAATCAGA	alt_5961_new	5	7	4	6	12	3	9	1	13	6
ACAGTTGACCTTCTCA	alt_5961_new	18	46	26	12	42	17	32	17	26	15
GTCTACCAACTGTTTG	alt_5961_new	41	50	31	36	64	19	69	34	42	30
GGCGACTGTGGTCTAA	alt_5961_new	12	24	15	12	18	7	28	8	29	11
TGGTACTTCGTTAGGT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
AATACTACTGAGTAAT	alt_5961_new	13	22	12	11	13	11	26	15	20	13
ATCGTATATTTATTGC	alt_5961_new	37	68	58	43	81	35	74	45	79	31
TTATGTTTCCTAGGAA	alt_5961_new	8	21	18	13	27	20	14	11	22	9
CTCGTTTAGCGCTACA	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TAGGGAGGTACCACAT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CGGGCCCCGAGTGCGC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CTTTTGGCCCCTTTTT	alt_5961_new	16	36	25	21	40	8	42	23	30	16
CACCGCTGTAGATATA	alt_5961_new	21	32	18	20	27	19	19	16	24	13
CCATACATGTGGCATT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CGGGTCGGCCAGTCCG	alt_5961_new	18	17	20	2	27	10	25	8	11	18
GATCACCGCTCTATCT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
ACATTAGGCGATCTGT	alt_5961_new	15	34	22	17	37	26	34	17	33	13
GCTCCAGAGGTAACCT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GAGCGGCAGTTCCACC	alt_5961_new	119	238	185	144	213	125	252	127	245	129
TACCCTCTATTTACAA	alt_5961_new	20	39	17	12	38	7	28	13	40	13
GTTCTTGTGATGCCAA	alt_5961_new	11	30	12	15	22	17	27	16	31	12
CAGCAACGGGCTGCGC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
AAATGAACCTCTCCAG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
ACGGTGGAGACGGTTG	alt_5961_new	15	17	21	22	11	15	26	14	23	6
ACTTTACTGGCCCGTT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TCTGCGGTAGTCAGCC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TCCAGACACGACCGTA	alt_5961_new	12	37	23	22	32	18	39	9	35	12
AGTGCTATGGGATCGC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GTATCCCCCAGCGAGA	alt_5961_new	7	5	2	3	5	4	6	6	10	2
CGGCCATACATAACAG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GTGGTTTTTGGGATCG	alt_5961_new	19	36	25	29	32	20	31	11	43	14
GTAAGAGGGCCGGGTG	ref_5961_new	26	39	23	17	35	21	30	23	36	26
CAACTCGCTTTCGTAT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
AGGCATATTTTAATGA	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CCAACTCTCTATTGCT	alt_5961_new	29	123	40	24	102	27	121	32	133	35
AATCACACCTCCTAAT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CGTGCGCTCTTTGCCC	alt_5961_new	39	99	52	47	94	47	103	40	91	49
GTTAGTGCGTTAGTTT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TTACTCGGCTGCGCGG	alt_5961_new	4	10	6	3	17	3	15	3	20	6
CTGAGGGGACCCTTGG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TCGATGGAGCTAGTGT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GTTGGATGGCTACTCG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
ATAAGGCAGGTAGTTT	alt_5961_new	0	4	2	1	6	2	4	0	2	0
CTCATACCCAGGTCTT	alt_5961_new	36	56	45	41	86	29	59	31	94	34
ATACGCGCTTCCACCG	alt_5961_new	38	68	49	48	95	40	99	55	97	66
GTTGCCTCCCAGGTGC	alt_5961_new	5	17	4	8	14	8	15	6	17	0
TAGCTGGGTGCTCGGT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TCCTGAACTCGAGTTC	alt_5961_new	6	22	3	9	11	8	18	8	23	5
TTAAACGTAAATACCA	alt_5961_new	19	43	26	23	31	19	70	10	59	14
ATGTCACCTAGGGGTC	alt_5961_new	3	6	3	2	7	4	8	6	9	3
CTGAAGTAATGGAACT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GAGTGGTTCGCCTACC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TCAACATCCATTAACT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TATTCAGTCCCCGGTC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GTTAGAGGCCAGCCAG	alt_5961_new	56	113	65	58	130	37	128	62	138	47
CCTCGCCGTGTCTCTA	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TGGCAAATTGCAATCG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TGCCAGTGCACATCCA	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GAATACAAGCGCGCTA	alt_5961_new	13	13	11	6	12	6	8	10	8	7
TTTCTTAGATCACAGA	alt_5961_new	40	61	36	31	64	43	52	36	62	30
ATGATTTCTATGCCCG	alt_5961_new	37	49	41	35	67	40	50	43	54	34
GCATCGGATAAACTTT	alt_5961_new	0	0	2	3	6	1	4	0	1	1
CTATTGCATCCCTATA	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TCGGAATCCCTGTATG	alt_5961_new	2	2	2	1	3	2	2	0	3	0
GTAGATAATGTCCTCC	alt_5961_new	5	3	3	2	12	1	12	5	11	3
AAAAGGGTGACATTGT	alt_5961_new	7	7	8	3	9	2	5	3	6	5
ATCTAGCCCGGGCTAA	alt_5961_new	4	17	6	7	8	2	17	4	11	7
ACAAGTCTTGCCCAGT	alt_5961_new	13	33	16	13	29	9	32	16	30	13
GGAATTCCTACGGTCT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CTAGCTATGGTACGTG	alt_5961_new	13	26	8	8	7	10	22	9	22	9
CCCTGTCCATTGATCA	alt_5961_new	12	26	18	9	34	9	29	8	27	11
CATTCCGGGCTCTGCT	alt_5961_new	19	33	22	17	37	24	51	10	51	9
ATACCTATTTGCGCAC	alt_5961_new	25	53	33	21	57	34	62	18	71	24
TAGCTTGGGCTAACGC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
ATAGCATCGAACTCGG	alt_5961_new	16	15	24	14	18	15	39	9	22	12
GCATTCTGTCATCTTT	alt_5961_new	2	14	4	5	7	3	7	6	15	4
AGTTGCACGTCTACCC	alt_5961_new	12	42	9	12	43	16	49	9	33	9
ATTTCTAGTGCATCGT	alt_5961_new	17	24	18	18	28	21	33	16	24	13
CCTCAAGCCTTAAGGC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CGCTGCTACGGCCCAC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TCACATTGAGATCTTA	alt_5961_new	9	17	7	7	14	12	18	6	5	8
ACCTTTGATTCTTTCG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CGGTGGGTCAATCCGT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TAGATTTAATAAGTTT	alt_5961_new	6	11	11	10	14	5	17	15	18	5
ATTGGAGCATTTGCTT	alt_5961_new	16	23	25	9	26	10	35	15	45	11
CTTGTCTTACGCTGTC	alt_5961_new	27	49	22	14	48	19	52	29	44	25
ATTTCATATTTTTCTA	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TTCAGCCCCCTGCGGG	alt_5961_new	27	59	41	26	53	25	63	26	53	35
TCGCACGGGGACTTAC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CCGGTAGAGTCGCATC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TACTCGTCACTCCTTC	alt_5961_new	6	46	8	11	41	2	37	5	43	6
ATACAACAGTCCAACG	alt_5961_new	21	26	15	14	40	8	32	11	36	16
CTTGTGTGTTACTTGT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TACACTCAATGCTCGG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TGGAATCGACGCATAC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CGGCTTTACTTAGCAG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TTTTGTCCTTCGTCGC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CCAGCTTACGAATACT	alt_5961_new	7	16	7	8	13	7	21	9	16	7
ATTTTGTGACGGGGTA	alt_5961_new	56	93	73	45	113	50	119	58	127	64
CCCAAGTGGCCGATTT	alt_5961_new	3	5	6	4	9	4	11	9	5	8
TTGGGCGGCTCATGTG	alt_5961_new	11	10	9	4	12	4	13	8	12	5
ATAATGGTCTAAAGGC	alt_5961_new	40	74	35	28	79	25	103	21	95	35
GGTAGTGCAATTGCAC	alt_5961_new	0	0	0	0	0	0	0	0	0	0
AACTAATTCTTGAGCT	alt_5961_new	49	71	55	36	67	43	88	30	68	37
CTTTGTTAGGTTAGTC	alt_5961_new	14	19	7	18	23	7	34	9	18	12
GGGAACGGCATGATTG	alt_5961_new	0	0	0	0	0	0	0	0	0	0
TTGACTAAGGAATCGT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GATCTTGTCCTCAGCA	alt_5961_new	6	11	7	9	14	11	18	7	13	8
ACCCTGTGGGCGCTGA	alt_5961_new	25	31	37	29	58	24	55	30	45	30
AGGCACATCCCTTGCT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
CTTGATAGTTACAGGT	alt_5961_new	7	16	11	9	28	11	5	6	25	5
TAGACGCCCCATAACT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GCTTCCAGAAATTCGC	alt_5961_new	48	91	65	51	108	49	98	59	109	62
AAACTAATCGATGGAA	ref_5961_new	128	188	148	136	216	134	187	112	151	120
AATGCGATGCGAATTA	alt_5961_new	26	45	24	22	34	18	40	23	39	6
AAACCGTAATCGTGTT	alt_5961_new	10	9	6	3	19	12	16	9	19	11
CTCATTGAAACACTTG	alt_5961_new	33	63	33	36	67	27	50	24	62	33
GGGTCGCTTAAAAGGT	alt_5961_new	0	0	0	0	0	0	0	0	0	0
GCTTAAGCACTCAGGT	alt_5961_new	28	74	56	44	93	37	80	34	75	37
GAGTTGTTCTGAAGGT	alt_5038_RC	58	15	75	55	11	78	14	69	15	47
CTCACGGTAGTATCCA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GCCTTCGTGTTGTTAT	alt_5038_RC	152	50	182	156	41	108	53	155	32	131
TGCGATAGGTATCTTA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TGCGCTTTCCTAACGC	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TACCTACCAGTATTTC	alt_5038_RC	17	6	11	19	3	22	4	23	5	23
ATAGACATGGGCTCCT	alt_5038_RC	182	33	238	211	36	170	43	186	37	138
GCCGGTTACATTCAAT	alt_5038_RC	5	1	10	6	4	4	0	11	1	8
GGGTCGATACCTCGCA	alt_5038_RC	1873	460	2204	1977	429	1772	493	1749	481	1677
TGTTACATACGTATCG	alt_5038_RC	18	3	30	28	1	29	10	26	9	29
CCATTTGTTGGAATCT	alt_5038_RC	218	64	246	246	51	234	66	179	58	198
TATTCCGGCTCCTGTC	alt_5038_RC	249	63	280	222	69	209	72	232	56	185
TAGATGGCATCGCGGG	alt_5038_RC	77	12	83	95	8	67	17	67	9	71
GTGCTGTTAATAAAAT	alt_5038_RC	257	36	308	274	67	248	55	248	36	181
TCTATTTCTTCAAAGT	alt_5038_RC	391	74	525	392	88	398	76	395	80	371
AGTACCCAGTGCGGGA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GTGTACGGAGTTAGTA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TTAGGGGTATAAAAGA	alt_5038_RC	70	12	94	76	8	60	15	63	14	48
TACTGGGTTTTCCATT	alt_5038_RC	390	73	511	410	87	362	80	359	89	365
GTATCGTATTCAAGAC	alt_5038_RC	122	24	142	116	17	101	26	121	22	95
CCCCTTGCCCATTAAG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TCGTCGCTTTAAACTT	alt_5038_RC	177	39	236	211	44	153	48	154	43	151
GACGATTTCACAATAA	alt_5038_RC	123	19	145	121	18	101	20	112	17	102
TACCTTTTTCGTGTAC	alt_5038_RC	91	25	124	99	23	108	14	105	29	83
TGTCCACGTAATTCCA	alt_5038_RC	321	68	409	370	65	310	70	329	76	337
AGGACCTTCGTTTCAT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TATGCGTCTTGTTTCG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TATGAATTCCGTATTT	alt_5038_RC	596	126	731	616	122	642	117	560	119	556
CTCCTGCTAAACGTTC	alt_5038_RC	276	62	321	296	71	290	57	268	81	242
GATTCATGCGCATGTG	alt_5038_RC	181	43	233	183	33	209	40	167	30	184
TCGCTTACACATGCGT	alt_5038_RC	132	27	137	131	25	152	28	120	25	118
GCCACGCCACACTTAA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TGGTGCTAAGTATTTC	alt_5038_RC	221	48	243	275	57	250	49	218	51	233
TTTGCCACATGGAATC	alt_5038_RC	12	15	15	12	3	12	8	12	8	5
GTGTTCGCGACCGAGT	alt_5038_RC	86	19	95	90	15	89	8	81	10	84
TGTGGATTCGCTAAAT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
AATGCTGTGGCGTTAT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
AGTTCGTACGCTGGGA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
ACCAGTTAACATGATG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
AAATCACCGCGGAGAA	alt_5038_RC	211	29	304	220	44	213	58	213	38	206
AGCGGGCATGCATCGG	alt_5038_RC	472	104	630	532	99	477	105	467	118	452
GTAGCCCTTGATTTAT	alt_5038_RC	886	149	978	881	157	783	175	774	143	746
TACATTATATGCGGCC	alt_5038_RC	299	63	385	288	62	308	56	292	65	274
TCGTGCTTTCCTGTCC	ref_5038_RC	1876	361	2061	1743	455	1684	403	1629	387	1521
TACGTAGTGGCGATTC	alt_5038_RC	28	9	27	25	7	22	8	23	11	21
ATGCAGTAATGCATTC	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
CACCTCTAGAACAGTT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GGCGTTCTCTTTAGAC	alt_5038_RC	22	2	20	26	3	16	5	22	8	22
GTTTCATTTGTGATGT	ref_5038_RC	129	24	158	112	19	137	32	160	34	115
ATTGAAGTCATTAGGC	alt_5038_RC	4	0	7	4	3	2	0	9	0	5
AAAAACAAATCCCCTA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
CAATTTTGACTTGTCA	ref_5038_RC	237	40	290	237	48	224	34	249	58	230
TATCAAGTCAGTTTGT	alt_5038_RC	33	3	31	38	4	16	6	16	6	22
CCTTTTCTCTAATGAA	alt_5038_RC	53	7	76	41	6	58	5	56	4	44
GCCCCTCTGCATTCGG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
ATATCGGATAGTGTTT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
ATATTGTCATGAGGGC	alt_5038_RC	291	55	323	293	56	247	75	243	63	229
GATAGTCCTAGGCCGT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
CGGTTGCACAGTAGGA	alt_5038_RC	290	50	316	323	67	272	59	266	60	255
TCTTGGTGACATTGTA	alt_5038_RC	137	37	121	106	22	99	28	86	16	120
GCTCGGGGATTTCCAT	alt_5038_RC	68	6	69	48	9	60	20	50	10	46
TCCACTTTCTGTATGG	alt_5038_RC	0	0	0	1	0	0	0	0	0	0
CTATCGGACTGAATCA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
AGCTGGGGTAGGATGC	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GTTTGGTTATCCTGTA	alt_5038_RC	48	9	65	48	8	67	11	58	15	36
TTATTTGTCATCGCAC	alt_5038_RC	148	38	192	147	30	146	37	129	57	166
TCTCGCCGTCCTAGCT	alt_5038_RC	203	41	219	218	50	178	42	197	31	145
CGGGACGTTTCTTGGG	alt_5038_RC	236	34	326	272	56	216	47	242	39	187
ATCTTAGAGTGTAATC	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
AGCCTCTCCAGAGCTC	ref_5038_RC	344	79	441	376	78	354	71	313	89	304
AAAGGGTATGACCTCA	alt_5038_RC	26	3	30	25	8	21	5	28	5	21
TACGTAAGCTCAACTT	alt_5038_RC	18	8	28	34	6	25	4	38	4	28
TTTTTTTGGTGTCCTT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TCTGCGAGAATCTCAC	alt_5038_RC	446	101	536	466	118	449	102	453	109	402
CTTTCTGGTGCTTATT	alt_5038_RC	0	0	0	0	1	0	0	0	1	0
TGTAGATAATGTGTTA	alt_5038_RC	15	10	15	28	6	20	4	27	2	12
TCGTGCTTTCCAGTCC	alt_5038_RC	0	0	1	0	0	0	0	1	0	0
CCGTAGGCCTCTCTAT	alt_5038_RC	3	3	4	4	1	7	2	3	1	2
GTGTTGTTCAGCTAAG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TTTCCAATGTGATCTT	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GCCCCTCAAGCATTAT	alt_5038_RC	97	14	132	91	16	94	15	69	25	84
TTACTAAGTCTCTCCC	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
CCACCTATAAGCTCGC	alt_5038_RC	18	14	35	17	23	20	21	15	22	25
AGCGCTTTCCTAACGC	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GTGCATAGTGAACCGT	alt_5038_RC	304	49	331	266	58	225	60	227	58	228
GAAGCTAAATGCGGAA	alt_5038_RC	27	8	38	24	7	18	2	15	6	32
AATTCGTATGCTAGCG	alt_5038_RC	102	18	107	78	14	84	16	65	24	60
ACTTGCTTGAAGATTT	alt_5038_RC	32	3	26	38	8	27	6	22	2	17
TTTTCCGCCTTATGGG	alt_5038_RC	23	7	19	13	7	12	11	11	5	20
CCAAGACTGTTGCTAG	alt_5038_RC	82	21	93	61	22	88	20	67	32	79
TACGTGGTCATTATTG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GTCCTGACGTCATGCA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GTAATCTGTAAGTTGG	alt_5038_RC	255	47	288	256	51	256	55	258	61	213
AATTCAAAGTCCTCTA	alt_5038_RC	60	5	49	63	6	32	13	36	5	33
CGCTCCAACCGCCGGG	alt_5038_RC	199	62	270	222	62	193	58	232	69	184
TATTAAAGGCAGCTAA	alt_5038_RC	235	65	262	211	71	240	66	242	61	205
TCTGTTAATTTTGTGC	alt_5038_RC	188	24	212	181	21	153	35	161	53	163
AAGTGCGTAGCATTGA	alt_5038_RC	228	48	275	218	41	210	51	209	54	201
CGGCTGCTGTGGTCTC	alt_5038_RC	95	26	123	112	24	81	12	89	19	101
TGCGGTTTGTTAACAT	alt_5038_RC	176	43	242	196	29	194	37	138	41	156
CCCGTCGACGGGCTAC	alt_5038_RC	6	75	10	4	73	4	63	4	70	3
TGGGATCAAAGGAATG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
GGTGGACAATCGTTGG	alt_5038_RC	154	30	226	210	33	170	37	185	45	161
GGCATTTATAATTTTA	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TCATAGGTTTTGTTTG	alt_5038_RC	248	52	290	246	45	244	50	216	46	206
GGAGCACCGTGACCTT	alt_5038_RC	61	12	53	45	10	49	12	48	9	35
TCGATTCGACACGGCC	alt_5038_RC	276	66	387	305	61	321	86	289	52	281
TGCTGGCGATCCCATC	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
TCTCTTCGTTGGCCTT	alt_5038_RC	79	18	129	110	15	90	17	89	23	87
TGTCGAGTGTGCAACG	alt_5038_RC	0	0	0	0	0	0	0	0	0	0
CCGAGCGTACCGCAAT	alt_5038_RC	420	85	496	443	113	427	83	395	56	452
CCAATCTTCTGATTAG	alt_6004_new	0	0	0	0	0	0	0	0	0	0
GCAGGTAACAGATAAT	alt_6004_new	2	6	3	2	13	2	11	4	5	4
TATTGGGTTCACGACC	alt_6004_new	21	25	18	20	27	13	37	16	31	15
ACAAGAGGATACAGCC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
TTGGGGGGTATGATTA	alt_6004_new	46	95	43	41	89	43	72	34	95	40
ATTAGCTGTTCTTCCC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
TCGGCTCGATGAATTG	alt_6004_new	3	14	7	10	8	3	13	7	15	5
ACCGTGACTAGCGTTT	alt_6004_new	23	25	11	17	42	12	40	11	44	15
CCGCACCAACATTCTC	alt_6004_new	8	6	4	3	7	3	3	1	3	3
AATGCTTGTTGCTGCC	alt_6004_new	2	20	6	13	14	9	14	7	10	10
CTATTTCCAAAATTCC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
GGGTCTTGCTCGTTGC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
GCTTATGTTCCCTTTT	alt_6004_new	6	13	5	2	5	4	8	6	7	8
GTGTGGAGACTACTCG	alt_6004_new	16	28	19	20	40	12	41	27	41	15
CTCGACTGGATGCCAG	alt_6004_new	0	0	0	0	0	0	0	0	0	0
AGGGTCACCGCAATCA	alt_6004_new	6	6	7	2	8	4	14	3	17	2
TTTATCTTGGGAACCG	alt_6004_new	0	0	0	0	0	0	0	0	0	0
CGCACATCTTTATCTG	alt_6004_new	0	0	0	0	0	0	0	0	0	0
ATACACAGAACATGAG	alt_6004_new	0	0	0	0	0	0	0	0	0	0
ATTAATAGCTGAATCA	alt_6004_new	5	13	3	5	12	10	20	8	16	10
GTGATGATTGTTACTG	alt_6004_new	14	21	16	18	26	11	34	8	35	20
ACGATGCTTGTACGTG	alt_6004_new	13	16	22	8	19	11	30	13	18	13
AGCCCCGTTTGCCGGA	alt_6004_new	14	29	6	15	37	10	23	19	42	14
CCACTTGATATTGCCC	alt_6004_new	3	5	3	2	4	0	6	2	7	1
AATGGACCCCGTGAAT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
TGGGTATCTTCCGTAA	alt_6004_new	5	14	12	11	8	14	25	5	29	9
TAGGCCGCTGGTCCAC	alt_6004_new	5	6	1	2	6	5	13	0	20	0
TGACTCTTCAGCACTT	alt_6004_new	11	30	25	26	40	9	51	27	45	15
CCCCGCTAGAGTTGGT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
AATGGTTTTCTCCGCA	alt_6004_new	22	24	26	26	37	18	34	24	34	16
CATGTTGCAAAATGAT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
GTCTCTGATCTCATAA	alt_6004_new	51	79	48	66	70	46	92	42	88	25
GGTTCTATGTTGTCTT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
GTCCGGCCATTACTAA	alt_6004_new	11	17	9	3	13	10	13	10	23	6
TCGTGCGGTTGACACA	alt_6004_new	0	0	0	0	0	0	0	0	0	0
CACTAAAAGGCTCCTT	alt_6004_new	5	6	5	1	1	2	2	2	6	2
CTTCATGTAGTGAGCA	alt_6004_new	92	190	90	75	198	90	208	82	207	91
CACTGAGGACATTAAT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
CCGTCTCTGGTCACCC	alt_6004_new	0	31	1	0	21	0	30	4	32	2
CTGAAAGTTTCCGCGG	alt_6004_new	5	6	2	4	6	3	10	3	9	1
CTTAACACCCCCTGCC	alt_6004_new	16	39	20	13	34	23	43	15	42	20
GACCAGTCTGGGGCAC	alt_6004_new	3	7	8	5	15	10	13	5	12	2
TTACATTCTAGTACGT	alt_6004_new	5	8	7	6	9	3	8	7	6	4
GCGGTCCGGATGATGG	alt_6004_new	9	26	16	8	15	20	18	8	27	11
AACGGGATGGAGGCGC	alt_6004_new	6	9	5	6	17	3	5	5	15	8
GAAATTCCGGTTGGGC	alt_6004_new	6	16	9	7	17	3	17	8	18	8
CGGCCTTCGGTTCGTC	alt_6004_new	16	22	16	16	26	18	19	15	29	19
GGGCTAGACACGCGGA	alt_6004_new	23	39	32	25	31	17	55	21	54	22
TTAGTCTCCCCGGGTC	alt_6004_new	0	2	0	0	1	0	2	1	2	0
CATTAGAGGGGGTTAG	alt_6004_new	7	7	10	10	11	8	7	5	12	6
TCTGGTTCAAGTTCTT	alt_6004_new	7	20	6	11	15	9	15	11	20	8
GAACAGCTGCCGTCTT	alt_6004_new	96	166	97	70	165	64	143	62	190	80
GCACCCTATCTCTAGC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
ATATGTCCAGACGGTC	alt_6004_new	11	16	14	12	34	15	30	8	28	10
TGCCCTTCAGCTGGGC	alt_6004_new	38	67	51	36	74	31	80	26	73	42
TTAACTGCCGTAAATG	ref_6004_new	0	0	0	0	2	3	1	0	2	1
AGATTCGATGGGTCCC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
TAACGGTGCATCCCAA	alt_6004_new	9	10	8	6	8	7	11	5	6	5
ATAGTAAATCCGTACC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
CGCGGTTGTTCCGTAT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
ATGCATTTTTATTACT	alt_6004_new	3	5	11	3	10	4	6	9	8	2
GAAAACACGGCAACGT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
ATGAAGCGCTCGCGAG	alt_6004_new	4	2	0	0	9	1	1	0	0	1
TGCTCATTGAGACGCG	alt_6004_new	7	13	4	4	12	8	17	5	6	8
GGTGTTGATCGCGACA	alt_6004_new	0	0	0	0	0	0	0	0	0	0
CGAGCTGGCTCCTGTC	alt_6004_new	19	35	17	18	53	24	47	9	51	20
TAAACGTGATATACCT	alt_6004_new	17	60	23	21	54	23	65	19	45	19
GGCCAATTTGTCATTG	alt_6004_new	7	12	9	6	9	4	15	4	8	6
ATAGTCATTTGCGTGG	alt_6004_new	33	51	28	29	41	15	44	21	49	17
CTGCCCGCTGTTCTAA	alt_6004_new	3	21	3	3	25	1	16	2	11	4
CCCAATAAATAGCTTC	alt_6004_new	0	0	0	0	0	0	0	0	0	0
TTGTTGATTCCGGGGT	alt_6004_new	38	75	48	50	85	29	70	39	91	36
TCGACAGCCTCAGAAT	alt_6004_new	0	0	0	0	0	0	0	0	0	0
TATACAGTGTTGTACC	alt_6004_new	20	47	29	23	31	17	35	29	32	21
GCCCAAAGGTGTCGCG	alt_6004_new	56	87	71	34	89	35	112	39	84	40
ATATTATTTGACTATC	alt_6004_new	36	102	35	40	80	31	79	55	109	29
CACACTCCAGTCCCGC	alt_6004_new	12	33	27	17	28	17	25	17	28	11
TGGTCTTAATGATCTC	alt_6004_new	15	25	11	11	26	10	27	10	24	5
CCGATACAGACTCCGA	alt_6004_new	2	5	4	2	7	6	8	4	6	2
GCATATTACTCATCGA	alt_6004_new	24	57	37	48	63	32	74	34	50	38
TACGGATCAGTAATTT	alt_6004_new	24	31	29	29	37	27	46	25	36	16
TACGGTGGATCTGTCT	alt_6004_new	18	14	11	9	20	11	11	5	14	8
CCGTATCAAAGTCAAA	alt_6004_new	1	8	8	7	15	7	12	2	9	4
TGTCAGAAATCTTGAA	alt_6004_new	15	33	12	15	28	13	23	16	32	11
ACTCGCGAAGGGTAAT	alt_6004_new	5	16	8	6	17	5	26	6	21	4
CCTCTACTAGCCCATA	alt_6004_new	6	14	9	4	9	4	8	5	6	4
GTAATTCTGCAGTACT	alt_6004_new	3	5	2	1	6	2	5	3	1	2
TTAGGGGCGTGTTTAG	alt_6004_new	2	6	0	0	4	1	4	1	3	0
GACATAAGCCATTTGT	ref_4103_missing	61	79	55	56	91	40	82	37	97	47
GCTAGAGCCGAACCAA	ref_4103_missing	0	0	0	0	0	0	0	0	0	0
TGAGCAGAATAGAGGT	alt_4103_missing	0	0	0	0	0	0	0	0	0	0
TGTTCATTCGCACTTG	ref_4103_missing	1	3	2	3	9	3	3	3	9	5
CAGCCTCTGTCATAAC	ref_4103_missing	7	39	5	8	36	6	55	7	48	4
CGGGTTGACATCCCTA	ref_4103_missing	17	40	15	14	28	13	40	12	32	12
GGGACATTATTTGACA	ref_4103_missing	54	87	65	57	84	49	89	50	99	60
GTCAGACTCCACTGTG	ref_4103_missing	26	29	10	17	22	6	47	5	23	11
TGATTGGAGCGGGGTT	ref_4103_missing	4	9	8	6	7	3	9	4	4	4
GTGGGGTGGTTTCTTG	ref_4103_missing	9	11	4	4	10	4	12	3	8	8
TGTTGCGCTCAAAGAG	ref_4103_missing	11	10	11	9	21	16	18	11	15	6
CACACCTCCCACGCAG	ref_4103_missing	7	28	5	8	28	1	27	3	35	7
TCTCCGAATTTTAGTT	ref_4103_missing	14	26	18	10	19	13	18	18	27	12
GTTCCTGACGAATAGG	ref_4103_missing	56	73	64	74	98	68	89	59	78	45
ACATGTCTATGTGATA	ref_4103_missing	5	13	9	4	10	8	12	4	10	4
CGAGACACTTGGCTCT	ref_4103_missing	0	0	0	0	0	0	0	0	0	0
GGGACATTTTTTGTAT	ref_4103_missing	0	0	0	0	0	0	0	0	0	0
GCCGAAGTCTCAGCGC	ref_4103_missing	5	8	4	6	9	9	6	4	13	4
TGTCTCACAACCAATT	ref_4103_missing	0	0	0	0	0	0	0	0	0	0
TTCCTGATAAGTATGC	ref_4103_missing	5	18	17	12	16	15	11	6	16	6
TATTCCAAGGACTAGG	ref_4103_missing	7	7	6	5	11	5	10	5	11	5
GAAACGCCACGGGCGC	alt_2754_fdr	18	17	18	22	18	12	12	13	11	22
TTTCTGTAAGAGAACT	alt_2754_fdr	80	69	107	92	67	61	67	78	81	69
TTGTGTCCATTTTAGG	alt_2754_fdr	13	7	31	16	11	11	16	11	17	18
TTCCGCTCACTTGCCG	alt_2754_fdr	14	17	9	13	11	8	12	5	16	19
TATGTGAGCTGGCTTC	alt_2754_fdr	157	141	178	178	121	143	131	150	142	129
TTCGGGATTCTTTATA	alt_2754_fdr	10	5	7	5	10	4	2	6	4	5
GCGCTGTGGAACACAT	alt_2754_fdr	67	73	95	70	75	82	90	83	77	64
ATAAGTCTGACGGATC	alt_2754_fdr	42	31	44	34	40	49	31	46	39	27
ACCGAAACATCTTGGC	alt_2754_fdr	14	17	25	17	11	25	28	20	19	16
TACGTGTTGGAGGTTT	alt_2754_fdr	3	6	8	5	3	3	5	4	5	6
GACGCTGTTATGATTT	alt_2754_fdr	12	14	23	21	7	14	20	16	14	14
GTTGGCCGCGCGTACC	alt_2754_fdr	30	34	26	31	38	22	21	34	37	20
TCCTTCGTGGGACCGA	alt_2754_fdr	48	59	49	49	70	51	45	55	55	42
AATTTAACATCTATCT	alt_2754_fdr	19	21	30	32	26	31	33	37	26	19
TTTCACTACGTTTTCA	alt_2754_fdr	2	6	7	2	4	1	4	2	3	4
GTCGTGCCTATTGGCA	alt_2754_fdr	13	8	7	10	12	6	9	6	0	6
TTGTAGACATCTATTA	alt_2754_fdr	61	43	67	88	43	70	61	59	50	53
AGGTAACCCAGTACGT	alt_2754_fdr	114	76	107	122	77	105	94	81	63	87
TCCCAAAGTTAGACGT	alt_2754_fdr	3	12	6	4	8	5	5	8	10	1
GGATTATCACAATTGG	alt_2754_fdr	72	74	89	82	74	85	80	80	78	62
ACAATCCGAAAGACCC	alt_2754_fdr	117	143	162	129	128	116	141	113	150	97
TCTAACACCCGCCCTC	alt_2754_fdr	56	64	61	51	45	43	50	65	42	54
GTCGATGTGAGCACCG	alt_2754_fdr	46	35	87	67	47	50	50	66	42	48
AGTGGGCAGGTTCGGG	alt_2754_fdr	84	65	106	78	70	88	72	71	67	76
GGGCGACGCAGTGTGC	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
CCGGATTGGAACATGT	alt_2754_fdr	29	52	64	64	55	39	43	45	60	41
TGTCGGCCCAACCCGC	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
GAATAATCAGGCCCTC	alt_2754_fdr	27	19	42	30	15	36	22	20	18	18
GCGTCTTAATCTGTCT	alt_2754_fdr	75	43	77	63	49	62	44	53	46	41
CACTCGTTTGTCATGA	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
GGGGCTCAATGTGTTT	alt_2754_fdr	8	15	27	18	21	18	11	13	18	21
GCTATTTATATTGGGG	alt_2754_fdr	186	149	188	160	147	163	141	135	159	147
CTCATCAGCGCTCACC	alt_2754_fdr	20	29	45	26	38	29	52	35	34	30
GTGTGTGATATTAATA	alt_2754_fdr	1	0	4	1	4	1	0	2	2	1
CGGTTCTTCAAAGACA	alt_2754_fdr	12	13	12	10	6	17	4	4	8	9
AGACTAATGGAAGCGT	alt_2754_fdr	136	114	171	154	104	118	95	135	109	99
TGTTTCCGTTGTGGAT	alt_2754_fdr	45	33	51	43	43	55	43	36	35	35
GATCTCCAATTTCCAA	alt_2754_fdr	228	162	248	217	159	205	165	223	189	195
CCGCAGCTGTTGAAAA	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
TACCAGAGACATATTC	alt_2754_fdr	20	10	23	16	12	26	15	24	25	16
GTATCAAGGTTGGGGG	alt_2754_fdr	2	12	7	2	15	6	14	2	15	8
GGTTTAGCCGTATATC	alt_2754_fdr	2	3	5	0	3	1	2	2	2	5
ACTCCAACGGGACATA	alt_2754_fdr	127	77	154	121	103	121	100	112	98	92
CACTACTGTTGTACTC	alt_2754_fdr	41	39	51	57	68	51	55	45	50	32
TTCGAACATGCGCAAC	alt_2754_fdr	21	47	33	30	56	36	56	20	50	30
CGCATCGGTATATCGT	alt_2754_fdr	13	14	14	9	6	14	12	8	14	18
TTTTTCACCCCGTCCT	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTGGGGTAGATAA	alt_2754_fdr	105	77	128	89	101	103	93	105	91	94
TCAACTTAATGCTGTC	alt_2754_fdr	44	51	45	61	67	53	48	64	63	48
GGTTATGATTTCACAA	alt_2754_fdr	42	37	75	58	52	51	46	52	76	48
GCAATGACTACAAGCA	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
GCTTGTGCACAAAGCC	alt_2754_fdr	356	338	458	391	346	380	356	383	360	298
TGGCCATCCTTTCCGA	alt_2754_fdr	48	98	71	71	109	56	101	52	116	37
CTTGGGAATTTATGTA	alt_2754_fdr	21	11	19	15	20	15	23	21	16	23
GGGTCGGTGGTGTAAT	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
TCAATCATTCTGCCAA	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
ATAGCGGATTTGGTCC	alt_2754_fdr	59	55	74	77	65	55	61	58	56	54
CTTGTATCTCTGTTTT	alt_2754_fdr	93	90	121	99	96	95	115	86	105	68
TATGGTCTGCTATTCT	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGGGTCTTATTTA	alt_2754_fdr	111	80	145	104	83	87	90	101	105	84
CCGTGCGGTGGAATTG	alt_2754_fdr	89	86	109	75	75	96	91	93	101	74
TAACGCAAGCCGCCTG	alt_2754_fdr	287	304	356	314	309	253	340	305	317	289
TATCTAGGGTGGGCTT	alt_2754_fdr	26	22	32	28	19	32	17	19	28	22
AGTGCGGTGTGTACAG	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTTCTGGTCCAC	alt_2754_fdr	18	18	32	25	39	29	22	26	22	20
ATGTTTCTTGTACAGA	ref_2754_fdr	11	9	7	15	13	8	8	6	18	6
TCTGCCGACATGTCGC	alt_2754_fdr	14	14	33	31	31	37	26	28	19	18
TCAAAAGGCCGTATCT	alt_2754_fdr	45	31	57	44	31	46	45	41	42	29
TCTGATCAGAGAACCC	alt_2754_fdr	28	17	33	30	26	24	24	25	34	18
CGTGGTTTATGTTATC	alt_2754_fdr	27	33	42	33	35	22	35	46	33	23
TGGATAAGTTCCCATA	alt_2754_fdr	14	14	17	15	15	14	14	6	10	22
GATCCCCTTTTCCACC	alt_2754_fdr	111	71	123	117	82	88	95	108	81	93
TCATATCTCTTGCATC	alt_2754_fdr	0	0	0	0	0	0	0	0	0	0
CGGGCGAGACTCAGCG	alt_2754_fdr	75	48	49	59	51	49	36	45	57	45
ATGTTACGGAAAGTCG	alt_2754_fdr	47	48	62	53	33	50	56	53	53	46
AATCCTCAGGCAAACC	alt_2754_fdr	11	6	14	13	6	6	9	7	9	8
AAACCTAACCATTAGA	alt_2754_fdr	15	32	24	20	22	25	31	22	25	27
TATCGTCATAATTATA	ref_2754_fdr	73	66	97	87	59	74	65	70	56	49
GTCTGAGCCAAAATTT	alt_2754_fdr	30	20	40	27	15	32	16	16	23	24
GGACTCAGTTCTGGTC	ref_2754_fdr	24	25	22	20	26	15	30	15	37	16
CCCTACAGACCGGAAG	alt_2754_fdr	41	67	55	53	72	40	73	67	69	32
CCAGAGGGAAAGGACG	alt_2754_fdr	7	69	15	19	60	8	54	21	54	22
TCTTTGGTTTAGTCTC	alt_2754_fdr	66	51	68	49	54	60	56	48	55	57
TTGCTATGTATACCTC	alt_2374_RC	57	24	56	63	41	35	50	47	38	47
TAGCATGTTGCATTGA	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TTCCAGTTCGAAAAAT	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
TCGGTACGAAGGACGG	alt_2374_RC	81	79	92	101	62	97	66	61	74	70
GGTCGTCCAGAATGAC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
CGAGCGGTAAGTTGCC	alt_2374_RC	38	20	28	23	26	21	27	32	28	22
TGAATGTATCAACACG	alt_2374_RC	5	11	7	5	9	20	19	9	10	10
CCCCATCTCTGACACA	alt_2374_RC	101	70	112	96	81	88	80	96	122	90
GCGACGCAACGTACCC	alt_2374_RC	3	1	2	5	3	6	3	2	2	5
GCCTCTTCCTTGCCCG	alt_2374_RC	21	24	45	38	25	35	28	45	30	33
ATTATAAGTGCGTTTG	alt_2374_RC	40	22	29	30	36	30	35	25	33	23
AAAGCTTTTGGATCTA	alt_2374_RC	24	13	46	21	17	19	21	20	18	15
TCGGCCCTCATTGACT	alt_2374_RC	15	16	20	24	25	17	16	10	22	14
CATTTGGTCTCAGCCG	alt_2374_RC	41	42	49	43	43	59	35	38	38	34
AATCAGGCTTGTGTCC	alt_2374_RC	223	195	257	209	187	174	187	205	188	177
CTTTGCAGTACGAGCT	alt_2374_RC	1	1	2	3	0	0	1	1	4	2
ATAATTTCGGGTAAGG	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
AGGTTACTTCGGCCTT	alt_2374_RC	225	180	322	227	183	246	212	241	233	235
TGTTCGGTAACCTCGA	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
GCACTCTTCACTGGTG	alt_2374_RC	50	39	63	48	42	42	46	36	45	34
GGGCTCGCAATACTCG	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
CGTCGATCTTCTTGCT	alt_2374_RC	15	7	6	7	6	15	4	10	3	8
AGCTGGAGCGGGGTTA	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
TAGCGGCGTGCCACTA	alt_2374_RC	9	2	17	6	5	7	2	8	3	8
TATCCCCGATATTATA	alt_2374_RC	79	74	71	70	78	59	113	65	77	56
TAGCCATCCTATTATG	alt_2374_RC	30	32	37	28	26	25	19	29	24	21
TCGCTGCGGCAATGCC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
AGGAGCGACCATCCCG	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
TGAGGCCTATGGATAT	alt_2374_RC	46	37	48	45	24	36	50	34	56	47
TAGGGTGGCCTCCTCC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
GATTTTTAGTATCACT	alt_2374_RC	426	340	477	398	342	428	345	381	345	405
GTGTCATGGGATTATC	alt_2374_RC	5	6	6	4	4	5	9	5	7	8
CTTCCTCGGCCATAGG	alt_2374_RC	8	7	21	11	16	10	7	10	8	13
CGCTAACTTATGCCCT	alt_2374_RC	4	3	1	2	0	1	2	1	2	4
AGTAAGATAGACACTC	alt_2374_RC	44	26	41	33	36	26	32	42	39	35
CTCAACTTGTTAACGG	alt_2374_RC	50	46	83	58	37	39	39	59	38	45
GGGATGTTGGGTAATA	alt_2374_RC	84	74	110	76	69	84	85	70	73	63
AGTAGATCAGGTAAAC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
AGGAAAGTACCTCGTA	alt_2374_RC	26	51	62	50	46	39	55	47	44	46
CTGCGTGGTCAGTCTC	alt_2374_RC	104	90	129	132	81	90	102	99	88	92
TCTTCAACTGAAATTA	alt_2374_RC	3	4	3	4	2	1	3	1	1	0
CGTGCGGGGAAATCAA	alt_2374_RC	39	24	37	39	37	40	31	36	27	24
ATCAGCCCTCTCTGCT	alt_2374_RC	32	36	35	34	15	34	32	38	28	26
ATTCCTATAGGGGCTG	alt_2374_RC	30	23	28	38	24	30	30	29	23	14
CCACTGGTTTCCTTTC	alt_2374_RC	152	96	151	157	92	110	86	120	94	115
GACTGTAGTCGGACAT	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTTTCGTTAGGA	alt_2374_RC	96	56	83	67	51	53	59	76	45	53
GTTTATTAGACTCTTC	alt_2374_RC	53	24	62	46	35	42	50	48	55	44
GACATTTTTCGCTAGA	alt_2374_RC	53	32	62	49	45	47	34	27	29	43
CATTGTGTTAGGTTCG	alt_2374_RC	23	17	38	33	21	24	21	15	12	26
CCACGATTGTGCTTTC	alt_2374_RC	1	0	1	0	2	1	1	0	0	0
AAATCCAGCCCGGTCG	alt_2374_RC	17	13	21	21	10	17	6	15	10	15
CTTACGTCCCGTACTT	alt_2374_RC	7	9	12	7	9	6	17	8	11	11
ACCTAACCTGAACTTC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
TAGTCCGTTTTAATCT	alt_2374_RC	37	30	52	31	38	26	38	24	33	32
ACGGTTCACATAGCTC	alt_2374_RC	47	38	58	59	51	40	52	52	42	38
TCGATGTAAATCTCGT	alt_2374_RC	46	28	67	60	43	59	39	36	39	41
TGAAGGTGGCATCTGG	alt_2374_RC	12	7	7	5	6	9	7	12	3	12
AAATGCGGATTCAAGC	alt_2374_RC	17	20	17	30	19	21	16	24	14	25
CGTGCTCTGCACAAGA	alt_2374_RC	14	6	13	5	3	14	8	10	9	5
ACGCAGACGACCCCGG	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
CACAGGGCGGTATTTT	alt_2374_RC	21	26	40	47	18	27	23	27	17	21
TGTCTATCGGCCTAAT	alt_2374_RC	76	80	92	101	71	80	85	71	85	78
CGCTATTTGTAATACT	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
GGTCCTGTTGCGAAAT	alt_2374_RC	15	11	16	18	18	10	16	16	10	12
AGTATGGCAGTATGTC	alt_2374_RC	148	114	170	161	94	133	136	138	108	141
GCTGTCTTTCAGTATT	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
GTGTCAAATCTCACTT	alt_2374_RC	42	66	63	59	48	53	62	45	57	36
ATTTGTGCGTTCTGGT	alt_2374_RC	29	16	43	40	21	36	27	28	27	26
CAATGAAACGCCTAGT	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
CCTCTTGGCACATTAC	ref_2374_RC	183	168	178	170	147	143	184	108	175	157
CGAAGAGGTGGTACCC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
GCTTATCATGCTGATC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
GCCCCGAAAAACCTGC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
CCGTGTCGTTGGATAA	ref_2374_RC	174	120	167	156	104	138	147	140	134	136
ATTCTTGCGTATTGCT	alt_2374_RC	32	25	36	58	30	55	38	53	42	34
CGCACTGTTAACCCGA	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
TGCTGCACCGTGAACT	alt_2374_RC	64	58	63	62	43	59	40	75	49	45
GATAGATCGTCGTCTG	alt_2374_RC	33	32	54	27	33	38	31	26	43	32
CTCAAGTTTTGGTCTC	alt_2374_RC	16	14	31	18	16	22	25	17	17	16
TTTGGTGTTCGGCGCT	alt_2374_RC	2	5	1	3	4	0	1	0	1	1
AGGAAATGGACCGATT	alt_2374_RC	19	15	28	22	11	14	11	16	8	11
TTGTCTTTATGATTCC	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
CTCCGTTATACACGTC	alt_2374_RC	20	38	24	12	43	20	69	23	56	28
AACTCTGTCTCATGAC	alt_2374_RC	4	3	5	6	2	5	1	5	3	6
ACAAATACACCAAGGA	alt_2374_RC	135	72	142	105	69	115	68	83	93	97
GTCATAGTCTCCGAAT	alt_2374_RC	23	18	23	24	14	16	16	16	13	15
ATTGGGCACTCCTGGG	alt_2374_RC	320	194	421	305	211	331	245	313	235	297
CCGGTGCTGCCGTTGT	alt_2374_RC	0	0	0	0	0	0	0	0	0	0
ATCCTCCCTCACAAGG	alt_2374_RC	81	86	95	84	64	95	80	91	78	86
TAGGGTGGACTCCTCC	alt_2374_RC	116	138	166	130	136	142	132	102	129	96
TGATCCGTCTTGCTAT	ref_5838_new	22	30	30	29	26	29	39	24	33	25
TTGGTGAAGTGAATTT	ref_5838_new	9	25	17	7	21	11	25	13	30	17
TTCTTTTACTATGGGG	ref_5838_new	8	16	15	13	7	3	18	3	14	3
TAAAATGAGTGACACT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TGGCGCCACTAACTGC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GACTGATTTGTACCAC	ref_5838_new	6	12	3	4	12	4	14	5	14	3
CAGAACGAGGCCCTTA	ref_5838_new	13	34	17	15	39	15	34	25	45	20
TATGAAATGTTTGGTA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CCCTCAGCTGGTCGCT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CCTGTAATTATTCGGT	ref_5838_new	11	45	18	12	39	11	30	4	36	12
AAAGGTTCCTCTGCTC	ref_5838_new	35	62	32	30	55	31	58	36	73	28
GGGTTGCCCCTGATGG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TCTCACGCGCGAAAGT	ref_5838_new	4	8	6	4	10	6	10	7	7	8
CAATTCGTGAACATTC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TTAGCTATTTAGCTTA	ref_5838_new	6	16	12	4	17	15	18	6	16	8
TTCAGGTGGAGCTTGC	ref_5838_new	1	9	0	2	7	2	8	4	5	3
GTTGGGTTATCTTGGA	ref_5838_new	12	31	34	12	44	17	39	20	44	18
TGTGGTTACAGTGCTT	ref_5838_new	60	127	55	66	119	53	165	41	146	50
AGGGGTATTTCCTGAT	ref_5838_new	0	1	0	0	4	0	2	0	1	1
ATCTTTATTCCGTATT	ref_5838_new	10	12	6	8	18	3	21	0	22	7
GAATTCATAGATGGGG	ref_5838_new	52	108	74	65	115	61	116	48	112	54
GGATCCGCGTTTTTGA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CACGATAATCGTCGTC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CCGGTATCAGCGGTTC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
AATTGTCACACGGCGA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TGGCCGGTCGATGTTT	ref_5838_new	3	8	8	4	11	5	9	0	7	4
TTGATGAGTGTCGAGC	ref_5838_new	8	17	7	6	8	7	24	2	13	3
CCGTAAAGGATCTCAG	ref_5838_new	19	26	13	8	35	12	18	10	29	10
CCGCCTGTACTCTGAA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TTTGCTGTGGCCGCAT	ref_5838_new	29	64	46	36	63	30	67	34	72	25
AACTCAGTCAGACCGA	ref_5838_new	8	16	4	10	7	4	14	13	21	12
TGGTCACGGTTTCTAA	ref_5838_new	57	132	80	60	121	55	138	59	129	57
AGTAGCAATGTGTTCT	ref_5838_new	15	47	28	22	39	19	36	14	53	18
TCTCATTTGTTATAAT	ref_5838_new	104	209	106	116	190	104	206	90	187	91
TCTGGTTAAGTTAGCC	ref_5838_new	0	3	2	0	1	1	1	2	1	0
GCCATTTCTAGAACAG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CAACATCGGCACGCCC	ref_5838_new	27	64	54	24	60	31	58	28	62	24
ATCGCTTCAAGGGCAT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CGCTATTGAACACAGT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TTCATCTTAGGGCAAT	ref_5838_new	7	12	6	5	11	4	15	3	13	7
GATCTGATGGTCCGTC	ref_5838_new	1	2	1	0	5	0	3	1	1	0
CCCGTTTTCTCCGGAT	ref_5838_new	70	146	66	65	144	53	131	51	176	40
GCGCGGCCAGCATAAG	ref_5838_new	10	24	12	15	20	12	20	6	29	7
CGAGAGAACCTATCCT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TAGTCCCTACGTATTG	ref_5838_new	5	27	7	3	30	13	30	12	37	5
TATACTGCGTGTGACC	ref_5838_new	67	179	90	76	213	69	214	83	181	63
AGACTAAAACACCACG	ref_5838_new	11	5	10	2	16	15	10	9	18	7
TTAGTCGTTTGTTCGC	ref_5838_new	11	16	11	8	14	4	16	6	16	6
TCTAATTTCGTACAGC	ref_5838_new	4	19	7	6	25	7	25	2	37	5
AGGTGATGCGTCAGTG	ref_5838_new	13	25	6	8	20	9	22	5	24	5
CCGTGTTGAGTAGTGG	ref_5838_new	5	11	5	3	16	2	11	2	12	4
GACCGTAGTTTGATGC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GTTTTAAAACGGTTTG	ref_5838_new	10	22	8	7	13	5	22	8	19	4
GCCTGGCCGATAATGA	ref_5838_new	10	38	20	14	56	11	44	15	53	20
CTAAGAGCACGTGGAT	ref_5838_new	21	44	13	12	45	11	61	14	28	19
TGTCGGTGGAGTGATA	ref_5838_new	11	10	12	10	15	10	12	2	10	5
AATTTGGTGATAGAGG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GTTATGAGTGCCTGAT	ref_5838_new	17	34	28	14	37	19	38	12	38	12
AGTGGTAAATTACATG	ref_5838_new	11	15	6	8	15	5	19	7	19	5
GTACTATGGGATCAGC	ref_5838_new	67	140	89	85	146	79	156	72	183	62
GAACACACGTCTGTCA	ref_5838_new	1	3	3	1	7	3	2	2	7	2
TGCCCAGGTAACATTA	ref_5838_new	11	17	5	12	13	5	14	6	20	8
AGCCGGTCACCTTTGA	ref_5838_new	4	16	3	8	21	5	15	6	23	7
GGTCCGACATCGTAAA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CTTATAGGTAGTTATA	ref_5838_new	14	27	12	6	36	13	22	10	35	13
AAAGAGAATTAAATCG	ref_5838_new	4	13	10	5	12	10	17	1	19	9
GTAATCCTAGCTTAAT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CTGCCCCGCTGCCCGG	ref_5838_new	1	5	3	3	10	5	12	2	6	5
TTGTCTTTGCTGGGAT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GGGTTATAGCACGTCC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CATATAATAATCAGCA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ATTGGTGTTGAAGTTG	ref_5838_new	10	14	17	13	23	13	22	17	32	6
TCTTTAGACCCACCTG	ref_5838_new	4	18	5	5	18	6	20	6	17	1
TCTCCAGGGCGTTTAT	ref_5838_new	6	21	17	10	17	11	20	10	23	15
GGTCAGTAGTTAGGGT	ref_5838_new	3	7	2	6	13	6	11	7	17	2
GATCTTTATCGTGCAT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TGTTGTTTGTAGCAAT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TTGACGTGCCAATTCA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TGTTCAGGTCCCTATG	ref_5838_new	31	52	32	25	59	12	65	17	71	22
CATTCCGGCAGTTGGG	ref_5838_new	19	35	19	12	40	15	33	12	54	21
TATGGAGAGATCGTCA	ref_5838_new	10	11	6	6	12	6	18	4	13	8
GCACCATATTGTTTCT	ref_5838_new	2	13	5	3	5	2	6	3	4	3
AGTATAAATCTTCGCT	ref_5838_new	15	33	19	14	34	11	37	14	30	17
TAGTAGTAATACTCTG	ref_5838_new	3	7	7	1	1	0	6	2	6	1
CTTCTAGCAAGTCTTT	ref_5838_new	1	5	0	0	1	1	5	0	5	0
GCGGATATATAGTGAC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TATTTTGACGATGAAC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GCGGTCCCGTGCCTGC	ref_5838_new	16	29	27	12	42	11	30	17	46	11
TCTTCGCGTTTCAATA	ref_5838_new	20	64	30	24	56	20	62	16	47	20
ATCTACGGCTAAGTTT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TTATTGTTCCCGAGTT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ATATGTAAAACTGTAA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TACGTTAAGAGAGCTT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TTAGTTTCAATGGTCT	ref_5838_new	4	10	3	3	9	4	9	1	20	3
TCTAGCCGATGGGCCG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ATTCCGATAGTGTTCT	ref_5838_new	14	28	18	7	20	8	22	6	27	4
CAATAAAGTACTTGAT	ref_5838_new	8	24	12	8	21	11	23	17	33	9
TCAGGACTATTCCTAG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ATCGGCTGGCAGGTGT	ref_5838_new	6	18	4	10	15	16	26	13	24	14
CACCCCCGTGGTGTTT	ref_5838_new	8	7	7	3	16	6	6	3	15	2
CGGGTATGAAATGGCC	ref_5838_new	43	76	46	40	98	59	85	49	102	35
ATGAGACGGGTGCCCC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TCAAAGATCTCACCGG	ref_5838_new	8	32	15	9	25	5	21	7	34	8
CATAATCTGTCACGAA	ref_5838_new	18	24	21	23	45	23	39	12	32	15
CACTCGCGTGGTGTGC	ref_5838_new	9	35	4	2	40	5	30	3	21	3
CTCTTTCTCAATCGGC	ref_5838_new	1	0	1	1	1	0	1	0	1	2
AATGCCAAGAAGGTTA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CAGTGAGCTGTTTTTT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ACTCACCGGCTCGGTT	ref_5838_new	0	5	0	2	10	0	11	1	4	0
CCACGGACTGTCGGAA	ref_5838_new	2	2	4	3	5	4	4	1	13	3
TCAAGAACGGTATTTA	ref_5838_new	33	59	29	33	76	33	70	32	88	34
ACATCTTCTAAAACTG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GTCACTCCCGGGCATG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TCTTTAGCCCCACCTG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GTCTCGGTGCGTTGTG	ref_5838_new	37	102	50	31	107	38	84	28	110	53
GCCCGATCAGATATTA	ref_5838_new	62	120	67	39	145	55	117	55	137	52
CCGTTGACTAGCCTAG	ref_5838_new	6	15	2	1	18	2	20	4	12	0
ATTGTTGTCCTCAAGG	ref_5838_new	6	11	10	6	20	13	27	7	11	7
ACTCCTTCTCCCAGCT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CTGAGACTTATCTTAT	ref_5838_new	34	126	59	45	114	53	109	50	116	37
GAGTTAGTGGGTATAT	ref_5838_new	7	26	7	5	25	6	19	8	22	5
AATCGGATGGTTAAGG	ref_5838_new	2	2	1	0	3	2	2	0	2	0
CGTTTCCCCGAACGCT	ref_5838_new	15	28	10	7	30	7	35	5	15	12
CTTTCAGGTTGCTGTC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ATCTAGGCACGAAAGC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CGCACTGTCAAGTCCG	ref_5838_new	9	22	12	11	20	9	30	11	18	15
TCTTCAATTTTGGGAC	ref_5838_new	17	57	37	20	70	23	73	22	73	27
ATACTCTTGGGTAACT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ATAGCTGACATATCCG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GGAGCTACGATTGTTG	ref_5838_new	6	1	2	3	2	2	2	0	5	1
TAACCTCGACATACGT	ref_5838_new	8	18	5	6	13	7	16	6	10	4
TTCGCGACTTAGCCGC	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ATAGGGCCTAAAGCCT	ref_5838_new	18	30	20	15	40	17	50	10	32	20
AAGTGCTGGTGGTTGG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GACTCGTCATAGCAAC	ref_5838_new	46	122	82	39	118	46	104	54	111	26
TATTTTGTTGACCACG	ref_5838_new	3	15	3	4	10	2	12	2	3	7
ACGATGATCCGCGAAC	ref_5838_new	10	25	26	17	26	13	35	11	27	10
GTTAGCTTTAAATCGT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TCCTGGTTGTCTGGTG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GACTGTTCTCTGACGC	ref_5838_new	1	15	3	4	8	12	13	7	14	2
TGATAATTTAAGGGCC	ref_5838_new	27	86	43	35	70	28	67	37	80	38
ATGTACCTCGTTGTCT	ref_5838_new	12	40	20	16	50	16	53	8	48	11
TACCGCGATAATAACG	ref_5838_new	9	26	14	7	22	11	20	21	19	7
CTGTTAATAAGCTTTT	ref_5838_new	4	3	5	0	2	2	15	4	8	3
ATCACTCATCAAGACT	ref_5838_new	3	10	5	2	6	7	15	3	3	1
TGCTAGCCTGTAGAAC	ref_5838_new	4	10	4	5	20	5	17	1	14	3
GAGAACTATGATGTGA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
TTTGACGCAAGTATGA	ref_5838_new	11	26	10	11	25	7	34	7	38	19
GAACGACGTCACCTGG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
ACTGAGCGCTTTCCTA	ref_5838_new	1	6	2	3	1	0	1	1	1	1
TGGCATCAACGCATTA	ref_5838_new	12	48	37	26	54	20	61	18	63	24
ACTAAATCCCTCCCGA	ref_5838_new	9	12	5	1	9	3	11	3	7	3
AATAAGCAGCGTCTCA	ref_5838_new	24	48	23	16	35	18	43	12	42	21
TTGCTGCCGGCGCCAT	ref_5838_new	12	32	29	20	16	19	25	18	45	23
GTTGATCCTCTCCTCT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
AGCTGGGTCTTCTTAA	ref_5838_new	4	10	7	3	10	3	5	6	6	4
ATTACTTACTCCCGCT	ref_5838_new	1	8	3	0	8	2	10	3	21	2
TTGGTAGACAGTTGTG	ref_5838_new	1	3	2	1	3	1	4	0	6	3
GTTACCAAAAATGTAA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GTAGGACATTACCGTT	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CTCAGTAGTGTTTGAG	ref_5838_new	0	0	0	0	0	0	0	0	0	0
GATTTCAAATCTAGAA	ref_5838_new	0	0	0	0	0	0	0	0	0	0
CCTTATCGGCCGTTGA	ref_5838_new	14	11	6	13	26	8	14	12	26	8
GGCACGAAATAATTAT	ref_5838_new	2	8	3	3	6	3	8	3	5	3
CTCCCTGGCAGCGCAA	ref_5838_new	16	42	20	7	54	16	50	11	56	17
TAAGGGCAAGACTCGA	ref_5838_new	15	40	28	23	43	16	31	14	36	15
TGGCACTTTGAGAACA	ref_5838_new	21	48	27	14	36	21	54	15	53	12
GGTTAGGCGCCCTTCC	ref_5838_new	26	29	20	17	40	16	26	17	30	8
CTGTGTGGGATGTCAC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTTATACAGGGTG	alt_1433_upstream	18	11	37	18	19	18	23	15	21	21
AAGGCCCTGAAAATGG	alt_1433_upstream	63	61	82	87	66	70	73	60	79	67
TGGAGTGCGAGCACTC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
ATGATCGAAATCATTG	alt_1433_upstream	28	29	39	17	16	32	22	17	23	26
CGGATCTAGGTTTCTA	alt_1433_upstream	19	15	19	23	34	18	25	19	27	14
TCTCGTGGTTCACGCG	alt_1433_upstream	54	54	76	53	64	70	74	65	57	42
TTGCGGAGTTCATAGA	alt_1433_upstream	121	146	150	146	126	123	122	134	127	109
TGCTGTCGCACTTGGC	alt_1433_upstream	30	35	35	47	30	41	61	41	56	43
CCGACTGAAGACGGAT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCATTTTCGTGCT	alt_1433_upstream	46	25	51	39	38	23	29	29	33	36
TTACATCAAAAGTGTT	alt_1433_upstream	56	69	82	63	42	47	73	57	79	56
ACATTCTGCCGTGGGT	alt_1433_upstream	20	15	13	20	27	24	14	6	14	8
TACTGGTGACATGACT	alt_1433_upstream	3	6	4	9	6	3	13	4	6	3
TTATTTTTTCGGATGC	alt_1433_upstream	0	0	0	0	0	0	0	1	0	0
AAGCCACCCGCAAGAT	alt_1433_upstream	31	17	14	17	21	13	16	11	15	21
TCAACAAGATGAGCCC	alt_1433_upstream	3	9	7	6	5	3	3	1	6	3
GGTTCTCTCCTGATTG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTATAGTCAGACATCG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
AGTGAGCTAATCTAAT	alt_1433_upstream	4	7	17	9	7	11	15	4	5	7
GAAGTAACAAGTTTTC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCACCTTGTATAT	alt_1433_upstream	2	5	10	6	7	3	8	13	8	4
TCGTCACTTCCCTTGG	alt_1433_upstream	5	5	8	2	8	3	8	10	11	4
CATGTAACGGCCCTGA	alt_1433_upstream	16	23	28	21	29	16	23	29	26	23
TTCCTTCAAAGCGTTT	alt_1433_upstream	17	13	16	16	4	9	6	14	14	13
AATTATGGGCTTTGCG	ref_1433_upstream	22	35	31	36	19	30	12	18	22	14
ATCCTGCCCCTCCTTT	alt_1433_upstream	0	1	1	0	2	1	2	0	2	2
TTCTTACTTGAGACAC	alt_1433_upstream	24	17	20	30	30	22	32	22	15	22
GTTTAGCGCGACCTCG	alt_1433_upstream	12	10	13	9	21	12	13	7	19	10
AATTAGGCTATTTATG	alt_1433_upstream	62	76	92	67	74	68	72	66	67	58
CACCATTCCAATTCGC	alt_1433_upstream	15	8	11	8	5	8	6	7	8	15
CTTAACTATGAATGCA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTTAACTGATACG	alt_1433_upstream	65	62	88	57	73	72	64	62	75	66
TTACGAGTGCTTGGAA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TACTAGGTGATCGTGA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGAAGAATACCTT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTCTATACGCGCATTT	alt_1433_upstream	21	22	20	29	17	22	20	22	20	17
CAACACAAGCCGTTCT	alt_1433_upstream	31	25	24	21	46	25	33	27	31	24
ATACTACTCAGGCTAG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
AGGCATTACATGACCC	alt_1433_upstream	15	24	21	17	26	14	18	21	28	20
GTATTCACCTGTGAGA	alt_1433_upstream	13	16	9	11	23	18	17	11	9	15
GCTTTATAGTTTGGCT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGAGGTCTTATAT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCGAGCTGAGCTC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GGGTATCATGGTACTT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCTATATAATGAC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTGCCGCAGCACA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
AACGGCAAGGGGTGGT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGTAGTTTACTC	ref_1433_upstream	9	21	13	20	19	8	14	13	23	20
TAGTTTGCCTTCTGGC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCACATTCCCCGGTAC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CTTATCCACGCGCCGA	alt_1433_upstream	2	1	1	1	0	2	2	0	2	4
TGCGACCTCTACCTGT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTGCCAACTCATG	alt_1433_upstream	45	36	49	48	46	36	58	31	50	34
AGTTGTCTCTAACTTA	alt_1433_upstream	53	47	49	35	42	40	42	38	48	36
GCTTTTTTACCGTACG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCGCATACTTCAACTT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCATACGTGGGC	alt_1433_upstream	17	21	31	16	20	27	13	18	17	9
CTCTCAAACAGAAACT	ref_1433_upstream	86	88	104	83	104	95	107	86	104	65
ATGTCTCCTTGAGCGG	alt_1433_upstream	17	14	24	15	20	15	15	13	17	15
GTGTTAAAAACAGCCT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGATTCTTTCGTTCGC	alt_1433_upstream	3	8	9	4	7	6	7	5	6	8
CTGTGGGGGCTTTCTG	alt_1433_upstream	32	22	21	23	26	31	22	23	20	19
GAGGTGGGGGGTAGGG	alt_1433_upstream	25	35	41	30	25	40	23	24	32	30
ATTCAAAACTAACGGC	alt_1433_upstream	9	14	11	22	16	13	16	12	20	19
ATTTAGTCTTTAGCGT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGTCTGAACTATA	alt_1433_upstream	27	23	41	32	22	26	39	22	25	16
ACGTTTTATTTTAGGA	alt_1433_upstream	31	28	34	30	30	34	41	25	35	29
TAATTAACTAGCAGTG	alt_1433_upstream	75	97	110	82	93	97	92	71	106	85
GCAACTACCGCCATAG	alt_1433_upstream	21	15	25	13	21	13	17	21	25	18
TCCTGAGTGTTGTGCC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTATATTTTTGGC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCGTTTAACCAGT	alt_1433_upstream	4	4	12	5	8	4	11	10	9	9
TTTCGTATGATAGTAT	alt_1433_upstream	22	25	32	27	30	15	30	34	35	20
CACATGCTTTCTTTGT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCACACTTGCCGCGGC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTAAATGCGTGGG	alt_1433_upstream	16	21	23	14	19	15	18	13	17	9
ATAGCCAGAGAGTATC	alt_1433_upstream	8	16	18	17	21	10	22	12	16	13
CCCTCTTAGTCTATTC	alt_1433_upstream	26	54	48	32	39	31	40	46	41	31
TTTACACACTGTTTCC	alt_1433_upstream	6	5	8	4	12	3	8	9	7	4
GAGTAGGTAATGGCTA	alt_1433_upstream	14	16	19	16	19	12	19	20	19	19
CTTATCTGCCCCATAG	alt_1433_upstream	66	65	82	64	71	85	87	70	69	49
CCCATGGGATTAATCA	ref_1433_upstream	17	11	18	18	11	12	9	9	5	8
TGGCACAAATCGGGAA	alt_1433_upstream	63	45	84	51	62	52	72	71	48	68
TAAGACACCGTTCACA	alt_1433_upstream	5	6	9	8	8	7	6	11	13	10
GTCGAGAGATATGAAT	alt_1433_upstream	23	26	32	17	17	27	19	19	24	16
AGTATATCTCCTGTTG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCGGAGTCTAGAACAG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGACTTCACTAGG	alt_1433_upstream	63	88	105	80	78	70	90	83	86	69
CTCTCTGCCTCGGGTT	alt_1433_upstream	4	4	2	11	8	5	7	5	8	9
CGGCCTCTTATGACTC	alt_1433_upstream	15	16	15	17	13	13	8	2	14	14
TTTCGGTTCGTTCAGC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TAGGAATGTCTAACGA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGCATTCGCGCCA	alt_1433_upstream	79	84	144	121	79	96	91	115	102	104
CGCACTATGTATCACA	alt_1433_upstream	8	17	8	3	7	6	5	7	9	4
GTCGATTGATCCCCCT	alt_1433_upstream	110	90	139	106	101	122	119	129	135	103
TGTCAAATTTCCACTA	alt_1433_upstream	13	12	20	4	3	9	7	4	16	3
AGGCTGGGTAGGTTTG	ref_1433_upstream	220	166	221	196	136	184	174	177	164	155
GTACCTTCTTTGTTGC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCTAACTGTGTCTCGC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGCGCTCGTGAGG	alt_1433_upstream	18	11	33	32	17	18	22	21	31	26
CTTTATGTGTCCGTTT	alt_1433_upstream	54	44	39	42	62	54	50	62	61	42
CCAAAGTATTTAGTTC	alt_1433_upstream	15	41	20	22	33	18	27	19	44	8
TTTTCGATGTGGTAGC	alt_1433_upstream	100	125	117	118	141	107	138	110	158	102
GGCACTGTCCACTTGG	alt_1433_upstream	15	18	31	13	20	17	19	22	16	13
GGTGAAAAGTAGTTCA	alt_1433_upstream	58	59	75	56	65	56	48	66	63	53
GCTCTGGATTAGGCAG	alt_1433_upstream	0	2	1	1	6	0	2	4	4	3
TCCAGGTAGGACTCCG	alt_1433_upstream	16	14	29	23	19	17	25	14	31	16
TCTGAATGCTAGTTAT	alt_1433_upstream	38	36	40	47	45	35	60	42	40	36
TATGCCCGCGCCTCAC	alt_1433_upstream	18	33	37	24	26	23	23	34	23	15
ATCAGGCATATCTACG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCTTAATAAGCGG	alt_1433_upstream	37	27	30	38	31	33	33	22	40	21
GTTGGACTTCCGTTTG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GAATTTAGTGTGTGCA	alt_1433_upstream	47	51	60	52	45	39	48	29	57	38
TGTAAGGTCTACTCAG	alt_1433_upstream	22	20	16	21	14	19	27	23	18	7
TAGGCAATGACGTCAA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GACCAGCCGTGCTTGA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GGATAAGAGGTACGAT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTCATTTGTTAAT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
ACCAAACGTTTGCCTA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGAATCCTCGTAT	alt_1433_upstream	18	10	25	14	10	21	19	15	17	15
ACACACAGAGTATTCC	alt_1433_upstream	5	8	5	10	7	3	10	4	12	7
AACTGATCTTTGCCCA	alt_1433_upstream	163	134	186	129	134	127	168	147	165	129
CTAAACCGAAAGGGTA	alt_1433_upstream	60	38	48	45	54	36	47	33	58	34
ATGTAGCTGTTGTACC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTGGGTCTGAGAA	alt_1433_upstream	30	35	29	18	21	26	19	16	28	15
GGCATTAAGGCTCCTC	alt_1433_upstream	1	0	2	1	2	0	0	0	0	0
CTGCCTACAACTCGTA	alt_1433_upstream	3	11	2	8	14	7	23	10	8	10
TCTGTTTTGATGGTTA	ref_1433_upstream	17	10	10	16	8	12	10	14	18	16
TTTTATTTGAGCCGTC	alt_1433_upstream	94	142	118	102	160	88	166	119	164	89
GTTTTTCTCTGTATCG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CACCCTCGCCCCCTTG	alt_1433_upstream	13	5	8	11	6	20	12	17	13	16
CATATGGAGCTCTCTA	alt_1433_upstream	12	6	8	7	16	12	7	9	10	8
CTATAGATGGGTTCCA	alt_1433_upstream	21	36	45	31	24	31	38	29	24	23
CTCCTCGGCGCTCTTT	alt_1433_upstream	54	70	55	45	49	46	67	44	54	34
GCCCGGTGGACTGGCC	alt_1433_upstream	15	27	23	23	25	11	24	16	25	12
TAAATCAACTTTAGAC	alt_1433_upstream	6	17	17	8	9	8	19	16	14	7
TGACATGTCTTCTTGG	alt_1433_upstream	7	1	6	3	2	3	9	3	4	7
CCGGCATAGTGATTTC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTACCGTCAAATA	alt_1433_upstream	257	272	305	269	291	231	300	251	329	242
TGCACGAACGATGTAG	alt_1433_upstream	8	9	4	8	2	7	8	9	8	8
GCGGTTTCCCACTCAA	alt_1433_upstream	56	64	65	63	53	41	40	41	38	50
ATCAAAGAAACCGCAT	alt_1433_upstream	59	56	65	70	53	66	62	69	83	50
ACTCTTACTCGGGTGA	alt_1433_upstream	25	23	21	27	32	18	25	27	26	24
CTCACTGTGTCAGTTA	alt_1433_upstream	0	0	0	2	0	0	0	0	0	0
ACAAGTACTTTTGTCG	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GGTAATGTCGAACTTC	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CGAGGACTAATCTCTA	alt_1433_upstream	3	1	2	3	2	2	4	0	3	0
CTCTATGATGAGTTAT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
GGACGGTATCTCAACA	alt_1433_upstream	22	14	18	16	15	28	26	17	16	14
TAGTGATTTGCAGCGT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGAATGCACGTAATAT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCTGTCACGAAGT	alt_1433_upstream	17	14	19	14	14	15	24	7	26	10
TACATGCCTTCTAAGA	alt_1433_upstream	70	59	68	83	90	87	68	47	70	54
AATCGGCTGATGATTT	alt_1433_upstream	77	63	77	65	46	64	68	53	73	48
GTTTCGGTTTCTAGGT	alt_1433_upstream	57	37	58	57	47	51	53	35	73	53
ATTCATGTTGGCAGCT	alt_1433_upstream	11	4	15	10	8	11	7	10	10	15
CCTAAAGTTGGCCAGT	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
CACACTCGAAACCTAC	alt_1433_upstream	6	10	7	8	9	8	13	13	11	7
TGGGTTGTATAACGTG	alt_1433_upstream	4	1	0	3	0	1	2	3	0	2
ATATCCGCAGCTAGGA	alt_1433_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTCGACAAGTCTT	ref_5857_new	87	69	76	73	72	74	88	67	89	51
CATAGTAAACGAAGAC	ref_5857_new	4	4	12	9	9	10	14	12	6	20
AGTACTTTGGCTCTCG	ref_5857_new	27	38	35	38	36	36	34	41	30	39
TTACGATTCTTGAGCC	ref_5857_new	45	47	56	52	41	58	63	55	55	56
CTGAAAACCCTGAAGA	ref_5857_new	6	14	23	10	13	13	10	9	11	11
GTGGCCGATGCCCGCG	ref_5857_new	67	67	83	81	49	62	71	59	76	86
TTTTTTATGATTGTCC	ref_5857_new	28	20	20	22	27	18	30	13	24	15
GAACTACACATGGCGC	ref_5857_new	32	38	41	38	18	32	22	24	24	20
TTTATTCTATAGGTAC	ref_5857_new	29	25	27	21	44	30	21	27	29	24
GGTTGCTCGGCGCGTC	ref_5857_new	54	42	37	35	48	43	31	56	48	36
GATGCAGGGATCCTGC	ref_5857_new	87	80	102	72	70	75	94	64	86	60
ACTTTAGGTGCTGCTT	ref_5857_new	18	15	25	16	19	17	26	11	17	13
TCTAGTCCCGTACGCT	ref_5857_new	102	128	114	101	157	101	174	109	133	119
GTGTAGTTTGCTCGTG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GATCGAGTACGACCCC	ref_5857_new	0	0	0	0	0	0	0	0	0	0
AGCGTTGCTAATTTTG	ref_5857_new	16	9	12	8	20	12	14	12	19	10
GATGTAAATATTCGCT	ref_5857_new	157	108	189	159	103	137	108	116	118	142
CTAGATTTCCACAGTC	ref_5857_new	16	27	20	18	29	23	27	22	23	19
TTGTGATGCAGTTGGA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GTGAATCGTGGCGCCG	ref_5857_new	31	15	11	13	12	21	18	26	12	10
TTGGTCTATTAGTCAT	ref_5857_new	118	103	129	81	99	120	109	101	89	102
CAGCTTAATTGATATT	ref_5857_new	35	25	28	23	31	21	26	27	38	18
TCGCCTATCGCAACTT	ref_5857_new	22	28	28	25	35	13	38	33	29	26
AGTAGCCTATGTCAAT	ref_5857_new	0	0	0	0	0	0	0	0	0	0
CCACGTGCCTATACGA	ref_5857_new	12	18	18	15	16	13	16	14	12	5
AACCGGACGCACCGGC	ref_5857_new	0	0	0	0	0	0	0	0	0	0
AACGTCTCTGATATGT	alt_5857_new	230	173	291	193	207	223	215	253	182	201
TGCTCTGGATGCGGAT	ref_5857_new	15	10	24	11	18	18	13	19	13	21
TTGAGGGCTCCCAGTG	ref_5857_new	34	28	52	33	44	50	28	34	34	30
TTACCCCACTGACACG	ref_5857_new	86	66	98	70	80	62	68	48	86	68
TACTTACGCTATGTAT	ref_5857_new	44	78	67	49	100	48	93	50	108	45
TACCGAAAATTTCTGG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
CGGGTTACGCTCTCAA	ref_5857_new	294	236	354	279	245	267	257	237	253	246
GGCAAGTGAGGCCCTT	ref_5857_new	4	13	9	8	7	11	6	8	16	10
CCCAATGTAAAGCTTC	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GCTCTCGTAGGTCGCT	ref_5857_new	0	0	0	0	0	0	0	0	0	0
CCCTTTCACTTTATTC	ref_5857_new	47	51	47	31	48	51	58	31	42	40
TCCCGTTTCAGTAAGA	ref_5857_new	9	12	6	4	12	8	15	4	16	6
ACTTGTGAAAGGGCCG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
TTTACTGACAGGGACA	ref_5857_new	22	21	28	15	13	29	13	24	27	11
TTCTTACATTAGACCT	ref_5857_new	7	4	13	7	10	5	3	1	5	7
TTCTAGCACACTCGCA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GGCATCCAGCCCTGGG	ref_5857_new	20	31	37	36	29	36	25	26	50	34
TGAATTGGGTCCGAGC	ref_5857_new	0	0	0	0	0	0	0	0	0	0
CTTTAGCATAAATACC	ref_5857_new	5	5	4	5	4	2	9	0	3	5
AACTCATGCATATCTG	ref_5857_new	38	28	33	39	31	31	37	31	50	44
GACAGGGCGTGTCAAA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
AAAGCGTTGTGGCTAA	ref_5857_new	6	5	12	8	13	10	6	12	13	13
GTCACGAACGTGGACG	ref_5857_new	81	64	82	76	81	92	74	80	74	88
CGAGTGTCTGTCGCCC	ref_5857_new	26	29	37	27	25	34	38	27	32	28
GGTTAGTATCTTTGAC	ref_5857_new	9	18	13	13	14	11	21	12	10	14
GTGAGCATTACAGGTG	ref_5857_new	30	36	34	32	53	37	26	26	39	12
GTTATGTAGTTAATCG	ref_5857_new	5	5	12	8	11	7	8	7	14	11
ATCCTGTTGCCACCCG	ref_5857_new	9	12	9	11	9	8	7	12	16	10
CCGCTTCTCGGTTAAA	ref_5857_new	6	12	19	20	11	7	9	15	6	7
CTCTTAGGGTCTTTGC	ref_5857_new	10	9	8	5	3	3	6	9	11	6
TCTATAGTTCTAGGTT	ref_5857_new	28	30	30	22	32	23	44	18	39	19
ACTTAATGATGGTTCA	ref_5857_new	332	277	352	376	302	337	354	314	322	312
CCTATGGGCCCTGCCG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
ATGGCTGTGTAGCGTG	ref_5857_new	109	141	169	113	122	114	130	81	157	116
CGTGGCGCCGGTGTCT	ref_5857_new	59	34	45	50	41	45	49	65	31	36
ACTATGTGCTGGGTGG	ref_5857_new	52	59	57	58	54	42	69	50	47	46
GTTTCCTCCGAATCCG	ref_5857_new	77	53	91	65	69	54	76	69	89	65
TTCAGCACTGATGCGT	ref_5857_new	25	28	32	32	33	20	24	15	25	24
AATGCTGGCGTGTCGC	ref_5857_new	20	13	19	20	18	14	15	11	16	29
GGCTCAGTTGCATGAC	ref_5857_new	10	11	20	14	8	7	9	12	19	16
TTCATCGTTTAGTGAC	ref_5857_new	6	2	4	4	6	3	5	3	7	3
TGTGATGGCGTCTAGA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
TCCACTCCAACAGGTT	ref_5857_new	8	4	4	2	8	6	6	6	6	4
ATCTGGACTGATCCTC	ref_5857_new	5	4	11	2	3	2	6	5	2	4
ATGTGTATAAGACTAG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
CGATTCGTTTTACCCT	alt_5857_new	45	39	56	63	36	40	28	41	36	46
ACCAAGAACTAACAAG	ref_5857_new	50	48	54	31	29	44	32	37	36	41
GGATATTGATATGCGT	ref_5857_new	0	0	0	0	0	0	0	0	0	0
TTTTCCGGATTTTTGA	ref_5857_new	1	0	2	1	0	5	1	4	1	1
CTTTTGCCCATTAACA	ref_5857_new	213	209	230	199	176	187	171	199	183	192
TTACGCTTGTCGCCAA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
AGCTCGGATTGTATGT	ref_5857_new	0	1	1	1	1	0	0	0	0	0
CCAGAGTGCATGACCA	ref_5857_new	121	126	98	77	164	81	162	88	149	100
TGGTTTCTTACCTTGC	ref_5857_new	0	0	0	0	0	0	0	0	0	0
CTGCGGTAACTTCCAT	ref_5857_new	3	1	6	8	10	9	7	9	4	7
TCCCCATGGAGCTAGA	ref_5857_new	0	11	5	3	18	4	13	0	17	5
CGTATTATACTGTGCT	ref_5857_new	10	11	11	4	14	7	11	8	8	5
CAATAGGGCAGATTGT	ref_5857_new	33	25	52	45	52	38	43	28	38	46
GCGCCCAACCGGCCCG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
ATTGCTCGACTGTACA	ref_5857_new	26	21	40	29	20	20	34	20	24	23
CGTTACCTGTGTTCGG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
TACCAGAACAAGTGTA	ref_5857_new	28	32	31	22	27	28	41	25	30	30
GATCGGCCAATGTACA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
ACCTGCAGGCTTTCAT	ref_5857_new	13	16	16	24	23	20	13	18	13	20
TGTGTGATGGTACTGC	ref_5857_new	12	11	18	12	18	12	19	16	19	11
ATTCCGCTTGACGAAC	ref_5857_new	46	96	67	50	91	52	96	50	77	54
GCTTGTGTCTCCTTGT	ref_5857_new	38	25	49	39	23	22	29	27	33	12
GCTCGCCTATCGATGC	ref_5857_new	12	8	10	3	13	6	5	7	7	9
CCAGCCAATGACTATC	ref_5857_new	8	11	4	6	6	3	15	1	22	4
GGTGAGCGATTGCATG	ref_5857_new	29	19	20	10	15	9	17	16	14	17
CCAGTTAGTTAAGTAC	ref_5857_new	15	88	33	32	109	28	72	25	71	15
TCTGCCTTGGATTTTT	ref_5857_new	46	35	43	33	42	37	40	36	54	31
GGAAATCCTTCCGCCT	ref_5857_new	16	8	9	9	7	14	10	7	10	12
AGTCTAGCTTACTACC	ref_5857_new	0	0	0	0	0	0	0	0	0	0
TGCCCGCATTATGGGT	ref_5857_new	81	73	96	102	73	62	103	77	99	85
GAATTGTGGCTTATTC	ref_5857_new	99	99	69	68	64	74	90	70	77	89
CCGATTTGTTGCATAG	ref_5857_new	60	71	90	87	47	79	65	79	53	62
AGTGTACGTGTGTTGT	ref_5857_new	6	8	3	5	2	9	6	3	11	8
TGTGTAAGGTTTCAAT	ref_5857_new	36	26	51	37	40	30	34	24	31	30
TTAGATGTTTAACCGT	ref_5857_new	14	23	25	10	31	26	35	32	38	20
AATACCAGCAGCCCAG	ref_5857_new	44	40	61	49	58	43	58	41	55	43
TAGTACTTTCTGCCCG	ref_5857_new	6	8	16	12	15	5	9	6	15	8
ATACTGCCATACAGAT	ref_5857_new	0	0	0	0	0	0	0	0	0	0
AAATTTACTATCATCC	ref_5857_new	75	51	75	82	71	73	63	76	80	66
AGTGGCGCATCCAAGT	ref_5857_new	35	40	38	29	38	40	40	38	42	53
AACAGTTATGGTCTGT	ref_5857_new	81	59	73	56	39	36	40	46	54	41
ATTCTCCACTCTTGCA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GGTATATAAGAGCTTA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
AATGTAGTTGACCATA	ref_5857_new	12	14	20	12	10	14	6	22	13	16
CAGGTAATCGCCCCGC	ref_5857_new	74	62	90	84	76	78	74	80	76	64
AGACAACCACTTTCTG	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GGTCTTCTACAACGAT	ref_5857_new	50	55	65	65	47	58	52	68	57	59
GTCCTCTAGAACAGTT	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
AGCAAATTGACTAGAA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
CAACGATACTGCTGGG	ref_5857_new	18	11	14	20	16	15	16	17	15	17
ATCTTTTGTTTGGCCT	ref_5857_new	98	106	128	100	126	99	85	109	88	107
TCGGACGCTATATCTG	ref_5857_new	69	45	70	58	47	57	63	50	56	52
ATTCTATAATGTATGA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
AGGCGGCTGGTCTGTG	ref_5857_new	18	21	29	22	17	18	22	16	14	15
TCTCTTTGGTGTTTCA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GAATCTCTATCGGCGC	ref_5857_new	8	9	7	5	8	5	5	4	5	4
GCCAATTGCAATTCAA	ref_5857_new	8	8	7	6	6	5	5	5	7	10
TCAGTACTTCGGACCA	ref_5857_new	34	31	39	28	36	20	36	34	44	33
TAAACCGAGTGGTTTA	ref_5857_new	43	36	57	52	32	36	54	28	48	40
GTGTTTATGTCCAAGG	ref_5857_new	5	10	13	8	9	10	19	5	16	8
CGTTCGACAGTCGGTC	ref_5857_new	21	12	21	11	21	8	25	20	21	13
CGGTAACAATTAGTTT	ref_5857_new	12	10	17	11	8	9	10	12	10	11
ACTGCGTATAATGTCT	ref_5857_new	44	34	49	28	36	38	37	25	35	25
CCTACTTCGTCAAACT	ref_5857_new	10	18	15	12	17	14	11	14	19	11
CTTTCGCGACTTCAAA	ref_5857_new	0	0	0	0	0	0	0	0	0	0
GGCGGACTCGATTCTG	ref_5857_new	30	25	27	24	20	21	24	24	17	26
CTGCACGCTTTTCACC	ref_5857_new	20	14	24	17	28	17	24	19	20	19
GTTGCTTGGCGGTCCC	ref_5857_new	13	9	22	13	11	9	14	18	21	14
AATACGATATTATACA	ref_5857_new	37	40	39	43	47	35	36	32	33	42
ATTCTTGCTCGCTGGA	ref_5857_new	1	2	4	7	6	3	1	6	2	4
CCAGGTCCATTTGTCG	ref_5857_new	25	47	37	29	45	25	35	28	48	18
ACCTTAGATCCATGTG	ref_6006_new	2	1	4	1	0	0	2	1	0	1
ATCAGCAACATGGCCC	ref_6006_new	63	58	59	38	62	50	56	37	55	68
CATTCAGCTGGGCGAC	ref_6006_new	147	180	165	116	186	141	197	117	205	133
TGCAAGCCGTTTTATC	ref_6006_new	34	79	48	26	80	25	66	30	68	30
GGACCTCAAACGGAAC	ref_6006_new	12	12	8	5	8	12	8	9	12	7
GTGCCTCATACTAAAG	alt_6006_new	13	12	10	9	6	13	13	8	19	14
TATCAACTCCCTTGCC	ref_6006_new	2	4	0	0	0	1	3	0	2	2
CATACTCGTCCGGTTA	ref_6006_new	21	18	14	12	19	14	16	8	22	8
GCCGACTATCAATTAT	ref_6006_new	10	4	5	15	26	11	11	2	13	5
ATGACTCTTCACAACC	ref_6006_new	2	6	8	1	7	3	11	3	2	2
GGACATGCGGATCGGC	ref_6006_new	7	14	12	9	12	13	22	8	19	14
TCTGTAGCTTTATGCC	ref_6006_new	21	37	36	27	44	30	41	23	52	26
ACTGTTTTTTCAAGCT	ref_6006_new	19	34	13	20	26	18	28	13	33	16
CCATGCTGACATCCGT	ref_6006_new	6	36	4	7	32	3	31	5	32	10
CCGGGCTGTATTTCTA	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GCATATACGTGTGCCG	ref_6006_new	2	4	5	1	3	3	3	1	3	2
GACGTGTGTTTCTGTT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
TTCTCCCCCAGGTGAG	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GTTCGGTCAGTCCAAC	ref_6006_new	40	61	62	40	73	54	55	58	66	40
TTTGATTGCTGATCGA	ref_6006_new	40	53	46	55	58	29	40	45	60	29
TTCCCTCAAATACACT	ref_6006_new	36	32	28	31	26	28	37	22	44	23
TCTGTCCCGACGTTGC	ref_6006_new	4	22	5	4	9	4	20	6	16	5
ACATCGCGCCGCAGAG	ref_6006_new	6	10	3	4	3	5	15	7	8	5
CGTGTGTAGTGTGTTT	ref_6006_new	38	71	38	42	79	41	87	47	87	32
TCGTGCATTCCGTCTT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
CGTCCAATTTTTACAC	ref_6006_new	19	27	14	14	44	16	30	27	39	17
TTTCAGAAGTCCTAGG	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GGCCCAGCCACATGTC	ref_6006_new	38	43	29	27	39	16	53	32	49	35
GTGAGACCGTTAGCGT	ref_6006_new	23	29	20	16	38	15	43	19	25	18
TTCATGTTTTCGGGTG	ref_6006_new	0	0	0	0	0	0	0	0	0	0
TTCCACGTCTCTAAGA	ref_6006_new	54	82	83	60	91	58	116	50	100	40
AAACAGTACGATACGG	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GTGGGGTTTTATATAA	ref_6006_new	65	87	65	75	81	60	81	52	119	46
CCTTGACGCTGCTAAT	alt_6006_new	16	13	19	11	27	15	27	10	24	14
CTATTGCTTCTAACAC	ref_6006_new	9	22	14	7	32	17	31	8	19	12
GATCGCAGTTTACCCA	ref_6006_new	28	40	46	21	30	19	35	24	43	29
CCGCCTGCGGACTGGT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
AACTCCTTGTCTTCAC	ref_6006_new	40	61	36	42	57	24	65	32	65	31
CCTGACACGGTTTGTC	ref_6006_new	20	45	15	26	49	17	37	29	35	14
GTGAACATTATAGTCC	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GACCCACCTACTCAGA	ref_6006_new	3	6	2	6	2	2	7	3	3	6
ACCGCTTCTTCTGTGA	ref_6006_new	10	36	11	10	44	10	27	7	34	10
CGGTGGACCGGCAATG	ref_6006_new	46	85	57	34	40	30	48	46	69	33
GTCTCAGCAATAGGTC	ref_6006_new	0	0	0	0	0	0	0	0	0	0
ATCTTGTAATATTCTC	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GTGTCCATGCGGTATT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
CGTATTGATCGCCTTG	ref_6006_new	32	59	40	26	69	41	53	17	50	36
CGACTTTCTAGATAGC	ref_6006_new	0	0	0	0	0	0	0	0	0	0
ACAGGTACAGGCCGGC	ref_6006_new	13	26	15	16	18	14	19	8	28	6
GGTGTCTTTCCCTTAG	ref_6006_new	18	31	21	20	26	15	25	20	31	12
CGTGGACAATTTAGGC	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GTCCCAAGAAAGGCCA	ref_6006_new	36	60	45	32	64	41	75	29	65	30
CCTTCAACTAGCGGGA	ref_6006_new	12	26	19	10	22	14	19	4	18	6
ACTACCAGCTTTCGAT	ref_6006_new	15	25	4	7	19	11	17	7	27	14
TTAGTTAGGCGTACAA	ref_6006_new	40	76	53	50	64	31	84	50	86	35
AGTTATGAGTGTTCCT	ref_6006_new	26	51	36	21	34	17	30	22	59	17
TGCTCGAGTTTTTGCT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
TAGGCTTTGGCTCGTT	alt_6006_new	10	18	20	14	16	8	14	15	24	14
CCGCGCATATTATTTC	ref_6006_new	65	65	69	56	87	55	101	54	115	47
GACTTACGGAAGTCTT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GCCAAAAAGATTCTGA	ref_6006_new	2	4	3	1	4	6	2	6	13	6
GCGGTGTCGGGTCCAG	ref_6006_new	63	63	49	38	76	57	91	38	69	41
ATCAGGAATTATTTCG	ref_6006_new	25	35	25	28	32	22	35	9	25	21
TTACCAGTGATAGCTC	ref_6006_new	0	0	0	0	0	0	0	0	0	0
ACGCTATGTGGCTCAT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
ATTTAACGCCATGATA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
TCAAGTGTTCGGTTCA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
ACATTCTAGTTGGCTA	ref_6006_new	9	18	23	16	28	10	32	14	26	16
CGTCCTGTGGCCTCCG	ref_6006_new	3	6	9	5	4	8	5	4	5	6
GTATCGCTTATGATTT	ref_6006_new	6	1	3	5	1	3	2	1	3	1
TCTTGGGCTTGGACCA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
TCGAGCGGGTAACTTT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
TCAGGAATAAGGTCCG	ref_6006_new	4	7	5	5	4	5	8	2	10	4
CCTCGTCTATTCTTTG	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GGTCTGATTCAACATA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
ATTGGCGACATCTGGG	ref_6006_new	20	11	14	7	16	22	21	18	14	13
CTCACAGCCGAAAGAT	ref_6006_new	50	89	61	41	82	50	84	55	88	50
TATAACTTCTGGTGCT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GCCAGACATCTTATCT	ref_6006_new	14	70	27	15	65	18	45	25	79	19
GACCTGCTTCGGACAC	ref_6006_new	14	21	15	8	15	9	13	10	22	10
ATGTGGTATAGCTATA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
CTTCGGTTTTGTGGCA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
CGCGAGTAAGCCTTTT	ref_6006_new	0	0	0	0	0	0	0	0	0	0
TCATTGGTTATACTAT	ref_6006_new	8	19	21	11	19	10	9	8	31	12
GATTCGGCACTGGAAA	ref_6006_new	18	40	22	19	32	26	34	27	43	16
AATACTATCACTGGGC	ref_6006_new	8	23	11	26	35	33	24	29	27	18
CGCTACCGAAAGCCAT	ref_6006_new	193	370	265	246	355	231	371	227	422	210
GCAAACTTTCACCCAG	ref_6006_new	8	12	14	10	18	2	21	3	13	8
ACGAGGTCCGAGGTAC	ref_6006_new	37	48	39	28	60	30	44	31	45	26
TCTCAATCTTTACGTT	ref_6006_new	32	41	37	29	35	27	25	25	44	27
GTAGGTAACTTACCAG	ref_6006_new	14	39	22	15	44	17	50	23	45	21
TATGCTGTGCGTCTCT	ref_6006_new	9	12	8	5	7	5	4	6	6	5
CGATCTTCACATAATA	ref_6006_new	28	28	39	27	41	27	29	32	33	21
GGCTCCGGACTTTAAA	ref_6006_new	12	19	14	7	19	8	19	10	15	10
TCAATTCATAGGTTTC	ref_6006_new	112	161	150	122	176	111	168	112	185	93
AGTTAACCAGCAGACC	ref_6006_new	81	65	73	61	86	49	80	56	92	54
CTTTATTTCCGCTGCT	ref_6006_new	27	23	30	20	26	17	41	15	28	17
CATTCGTCTGTGCACA	ref_6006_new	9	20	8	9	17	9	16	15	22	8
TATAGCCGCGCACGTG	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GCACCTTGTACAGGCT	alt_6006_new	140	208	152	135	180	110	154	119	202	102
TGCATGTCAAGGCAAG	ref_6006_new	0	0	0	0	0	0	0	0	0	0
AGTGTCCCTTGCCATA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
GGAATATCTGTAAAGA	ref_6006_new	0	0	0	0	0	0	0	0	0	0
ATCACGAGTCCCGTGG	ref_5708_new	8	19	6	15	8	6	17	10	20	11
CGACGCCATGCACATC	ref_5708_new	15	46	22	25	60	17	43	14	35	12
CTCGCGTCGGAGATCT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CTTTCTACCCATAGTT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CCATAGGGAATGGGAC	ref_5708_new	24	34	15	12	41	21	39	16	34	15
AACTTCAATCGCTACC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TGCCTGTTTATTGCGT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TTTATAATTGCATGCC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CGCAGCTTATTGCAGC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CGACATGTTAGACGTC	ref_5708_new	9	9	4	4	12	6	13	5	13	7
ATCACACATATTGATT	ref_5708_new	13	20	12	11	20	17	22	4	27	7
AAGTGAGGCCTACTTT	ref_5708_new	28	48	31	19	54	26	59	25	53	21
TTTGCTTACTTGGTGG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CTAATCGTGGGTTCTA	ref_5708_new	10	17	5	3	20	11	22	9	20	10
CATAGCTAACTCTCCG	ref_5708_new	10	52	13	21	30	14	32	13	40	15
TAGAGTTATTAATGGA	ref_5708_new	8	19	9	8	19	8	13	10	22	5
AACCAGGCAGGGTTTC	ref_5708_new	16	47	17	20	46	14	42	13	36	17
GCATTGATGATCAAAG	ref_5708_new	9	15	12	12	23	7	21	8	12	9
AGACTCTGACTGGTCT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CACATGCAATACACCG	ref_5708_new	14	52	30	32	45	15	57	24	53	18
CTCGCACACCGGTGCA	ref_5708_new	143	204	144	148	225	108	234	94	248	87
GGGTTCAACTCTCGAC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CATCCACATAGGAAAC	ref_5708_new	6	22	12	13	17	2	19	11	25	4
CCGCTAGATGGCGAGG	ref_5708_new	58	86	56	38	102	51	108	37	76	38
TCTTCGCAGGCGTAGG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CGGGATTGAGTCCTTA	ref_5708_new	6	18	13	8	14	13	15	6	22	6
AACAGACCACCTTATG	ref_5708_new	5	10	6	7	16	5	12	3	14	9
GTTCCGTGGCTCTTAC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TGACTATTCGTGTCCA	ref_5708_new	6	12	13	9	14	2	27	7	16	12
ATGACGGGGTGATCTG	ref_5708_new	6	12	2	7	8	2	7	12	6	10
CTGTAACCAGGGCTAC	ref_5708_new	11	40	19	16	27	18	39	19	36	14
CACAGACGATTGGCAG	ref_5708_new	16	34	26	11	39	22	25	11	36	24
ATTATTTGACCATACG	ref_5708_new	11	17	5	11	16	9	21	4	23	8
TTCTTCCTCTGATCTA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GAGCGTTAGTTCTAGA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GCGAACCAACTCAGCA	ref_5708_new	4	15	1	6	19	7	24	2	18	1
CTGCAGTATTCCTTCT	ref_5708_new	39	83	49	47	77	27	64	42	59	36
CGCCAGACTTCGGTAT	ref_5708_new	21	30	16	19	38	12	40	23	40	15
AAATAGGCGCTCGACA	ref_5708_new	11	21	5	8	29	15	32	14	30	7
CCAGAAGAAGTTTTCT	ref_5708_new	2	16	8	5	12	2	13	1	18	5
CCCTCTACGTTCTCCC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
ATCGTTAGCAGCGATT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GATACTTGCGCTTAGC	ref_5708_new	143	254	146	162	260	138	281	104	266	114
CTGAACACGGGGGCGT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CGAGTTTGTCATTTTC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CTCGCCCACCGGTGCA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TTGATCGGTTCCTAGG	ref_5708_new	11	25	15	16	27	16	35	12	29	12
ACTGCCGCGCTTGCAC	ref_5708_new	39	86	64	48	97	55	110	34	93	25
TGGCTTCCCACGGCGC	ref_5708_new	5	8	9	7	14	7	9	8	12	4
GTCCGATTCAGTGAGC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CCAGTACCTTAATACC	ref_5708_new	5	25	6	7	16	9	17	6	31	7
GCTATGTTTTTGCGTG	ref_5708_new	14	24	13	7	25	8	22	7	24	10
AAAGTAAAACTTTTCT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TACGTTAGGTCAGGCT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
ACTTGTACAGAATTGA	ref_5708_new	2	1	4	3	13	5	10	2	8	0
TCTCCGGATGGTGGTT	ref_5708_new	12	11	9	7	19	10	27	6	17	6
TTGGTGCCTCTCCGCC	ref_5708_new	7	16	15	9	8	5	18	4	20	15
TTTATAACTTTGTATC	ref_5708_new	17	33	27	20	36	20	30	15	34	9
AGTACGATTTTCTACT	ref_5708_new	3	3	6	0	4	5	6	5	5	2
CGTTTTAGCCGGCTGC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GGGTTCCACTCTCGAC	ref_5708_new	92	216	126	127	221	79	193	89	216	105
CGAACAAATTATTACA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TATGCGCAATTCTATT	ref_5708_new	9	11	9	2	19	18	9	3	8	2
TCTACTGTATGTTGGA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GTGAGAGCGTCCTGGT	ref_5708_new	1	15	2	3	7	5	7	4	9	3
CCTAATGTGGTTCTGG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
AGGGCCATTGTAGGTG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TGCCTCGTGTTATCTA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
AATATTTAGGTCGATG	ref_5708_new	33	38	26	21	39	22	44	21	47	29
ATTTCCCACTAGGTAA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CTGCTGTGTTCTTACC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TGGGTATGGATTGAGG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TAAGTCCCTGCTGCCC	ref_5708_new	10	18	7	7	15	11	18	8	14	9
AGCGAGTAATGATATT	ref_5708_new	29	75	38	42	86	41	75	41	74	27
GGCCATGCGTGTTTCC	ref_5708_new	16	64	19	18	79	14	74	18	67	13
AAACCATATAATACCC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TGCCAGAGGTTAAGTT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GAGAGCTTGATCTACA	ref_5708_new	9	16	10	9	12	7	18	10	11	16
GCACCTGGTCCGAGCC	ref_5708_new	6	24	23	11	24	14	15	17	14	9
AGGCATTCATCATCTC	ref_5708_new	14	16	8	5	19	8	16	5	21	5
CCGTATATCGGGTAGC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GCTGACTATTCGTCGA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CGGTTACACTGGTTAT	ref_5708_new	5	13	5	4	18	8	13	5	12	7
GCAATTCGTCATTTCT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GTTCTTGGAAGCAGGC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CGGACGCTTATGACTC	ref_5708_new	19	37	22	17	56	33	35	17	41	22
TCTATTTACTAACTCA	ref_5708_new	7	14	5	5	13	5	20	2	15	7
TACACCTGGATCACTG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TTTTTCTGTTCCTGAG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
AGGGTTCGAGGCGCGA	ref_5708_new	5	7	3	2	8	6	8	1	3	1
TAGAAAGCGCTGTACG	ref_5708_new	7	9	5	3	13	3	8	4	6	5
AGTTACCTAGCATGTG	ref_5708_new	1	18	5	4	16	7	12	3	7	3
TTACAGTTGGTCCTTG	ref_5708_new	23	38	26	21	45	21	67	29	48	17
TGTCCGATCCGTTAAC	ref_5708_new	41	97	45	38	102	41	94	52	111	36
ATTTGCCACTCTCAAG	ref_5708_new	50	86	70	52	99	45	116	59	129	42
ATTCTATCGGTTTTCG	ref_5708_new	28	54	51	31	52	35	53	21	70	19
ATGAGACCTCATTCTA	ref_5708_new	0	4	5	3	0	3	0	2	3	0
ACTGTACGGGGTAAGC	ref_5708_new	64	147	76	72	143	68	141	71	158	46
TACACGATGACTTTCC	ref_5708_new	16	77	15	15	57	17	86	10	80	15
TGTGTTAGCTCCATGT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
AATGACGGGCTGGCCG	ref_5708_new	32	52	37	21	61	25	56	31	66	27
GGGTGGACGGGCTGTT	ref_5708_new	14	34	18	13	27	8	22	12	30	16
TAAGGTTAATTGTGGA	ref_5708_new	19	17	15	10	30	13	18	16	21	7
TTCTGCGACTTTCGTA	ref_5708_new	20	28	15	19	32	16	25	18	30	15
CGTCAACCACGATCTC	ref_5708_new	2	13	4	7	10	1	18	2	18	4
CCTGCCCCTTACTTTA	ref_5708_new	33	52	39	33	55	28	63	35	60	34
TAACTCTATCTGTTTC	ref_5708_new	13	47	33	25	38	28	41	21	40	23
CGAGCCAGTGGAGCGA	ref_5708_new	23	83	28	24	78	30	57	33	81	25
CTTACTATTTTCAAAG	ref_5708_new	16	59	26	19	59	25	49	14	61	23
TTATCATGAAGGGTGG	ref_5708_new	17	27	28	10	25	15	20	16	22	7
TTATTCTAGGGATGAC	ref_5708_new	49	86	43	35	76	28	87	16	81	16
TATTAGTCGATTAGGT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
AGATACCTAAGACCTA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
TTTTATGGCACGCGCG	ref_5708_new	29	39	21	15	37	29	34	14	54	21
CGTCCATAGTTAATAT	ref_5708_new	56	126	77	58	128	48	132	56	117	51
TACACTTCTACCTGGT	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GCTACTAAGAACATTC	ref_5708_new	14	25	15	12	25	14	23	13	45	11
CCTGTAATTAACTCGT	ref_5708_new	7	19	7	10	28	10	20	3	30	7
TCTTCGGGCTTTCTGC	ref_5708_new	0	0	0	0	0	0	0	0	0	0
AACGGGTTGGTTTACA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
CTCTTCCCTTATCGTA	ref_5708_new	31	16	18	10	34	10	21	7	21	9
TTTGTTCATCCTCTGG	ref_5708_new	12	21	13	5	24	13	18	10	26	12
GACCGCTCCCACCGGT	ref_5708_new	2	17	16	8	9	9	21	9	11	9
CGCTCCACCCCGCAAT	ref_5708_new	36	93	48	39	76	30	99	25	88	28
ACTGCGTGAGCCGAAA	ref_5708_new	0	0	0	0	0	0	0	0	0	0
AATAAAGCACAAGTTG	ref_5708_new	0	0	0	0	0	0	0	0	0	0
GCTACTTGACTAGAGC	ref_5708_new	0	0	1	0	1	1	3	0	4	1
AGCCTTTCTGTTTGTT	ref_5708_new	7	20	4	4	26	10	23	4	40	3
TCAGGCCTTTATTCGG	ref_5708_new	45	123	67	76	99	53	128	43	105	46
ACGCGATTTTGGCCTG	ref_5708_new	6	18	22	13	19	10	18	8	26	10
CTCTCCTTTTTCGACC	ref_5708_new	2	13	10	3	8	4	18	2	9	2
GCGGTTCAGTATCTTG	ref_5708_new	17	36	30	18	40	23	41	12	37	12
ATGTCCATACTCGTTC	ref_5708_new	8	20	4	13	20	8	15	7	18	9
TCTTTTACGAGATCAG	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
GACGCCGATACTTACG	alt_2534_reverse	1	2	1	0	12	2	3	2	6	2
TATAACCGTACAGAAG	ref_2534_reverse	5	16	8	13	22	14	9	6	15	15
TACTCTACAATCTAGT	alt_2534_reverse	24	41	34	19	44	34	33	20	26	30
TATACGATGAAAAAAC	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
TATATGAATTGGCAAT	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGTCCTTCAAAAA	alt_2534_reverse	43	56	57	35	68	50	58	46	64	31
GACGTGTGGCCAGATA	alt_2534_reverse	53	81	77	79	68	70	93	50	81	58
GCGGCATGGCTCACCG	alt_2534_reverse	17	24	19	24	16	21	12	16	12	22
ATCGGACCCTTATCCC	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
GTGTAAATTGCTCTTA	alt_2534_reverse	5	15	4	2	16	9	6	7	9	9
TCCCTTTCCCCTGTTC	alt_2534_reverse	9	10	18	8	15	12	16	8	10	10
TAACTCTCAATAATTT	alt_2534_reverse	5	4	4	5	2	7	3	7	7	5
AATCCGCGTTTTCGAT	alt_2534_reverse	64	53	54	53	53	45	34	63	48	51
AGCGCTTAACGTCATT	alt_2534_reverse	1	1	1	0	3	0	3	1	2	2
ATGGTCGGTAGTTGAA	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGATTACAGTTAC	alt_2534_reverse	142	142	179	118	170	133	178	129	182	114
AGGTTAAACAGTCTTC	alt_2534_reverse	23	34	35	31	46	29	32	27	28	25
CGTCCATAGTGCCGGG	alt_2534_reverse	14	15	19	19	11	13	18	14	15	16
CTCGCGCTCCACTAAT	alt_2534_reverse	82	80	110	78	95	76	95	58	88	54
CCCGAGTGCTTGATTC	alt_2534_reverse	34	20	21	29	24	15	24	12	24	11
ATCCTATCTTTGTGTA	alt_2534_reverse	73	90	114	70	112	69	126	78	107	85
AGCTAGTTTCAGGGCC	alt_2534_reverse	63	50	62	59	83	52	74	45	84	64
GCTCACTTCTAATTAC	alt_2534_reverse	18	51	43	26	45	17	47	29	60	30
GCTTACGGCTAGCCAG	alt_2534_reverse	22	34	23	17	22	21	31	14	17	17
CACGTTTCCATTGTAA	alt_2534_reverse	33	34	24	31	25	21	36	21	30	19
ATATTGGATTGCTTGT	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
CTAAATCACTCATACT	alt_2534_reverse	34	55	43	35	59	15	59	31	62	33
GTTATCGCGTGTAGGC	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
GGTAACGGTTAAACGG	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
AGGTATTCCTTTTTCA	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
TGTATTTGATCATGTT	alt_2534_reverse	3	4	7	4	7	11	5	4	12	0
GGGGCGCAGGGCTGTA	alt_2534_reverse	161	151	176	152	176	122	172	155	162	152
TCACATCGTCAGAGTA	alt_2534_reverse	49	52	36	40	59	36	45	49	49	34
TGTAGCGTTTACTAGC	alt_2534_reverse	12	14	15	11	23	12	24	19	23	11
TCAGCCCGACCTCAAT	alt_2534_reverse	17	32	34	29	52	20	48	26	47	20
TATTTCAGAAAGAGCG	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGCGGCATTTAGC	alt_2534_reverse	40	54	44	43	56	39	61	36	46	37
GCTAAACCTTGATATT	ref_2534_reverse	22	31	41	29	39	24	31	22	36	37
GACCCGAAACAATATT	alt_2534_reverse	28	25	41	28	23	17	29	19	51	27
CTTCTTTGACTATAGT	alt_2534_reverse	144	243	209	188	247	159	255	153	236	169
AATTATGTACATCACG	alt_2534_reverse	75	113	119	100	121	84	150	103	132	87
CTCAACCTGATTGATA	alt_2534_reverse	3	13	3	2	13	4	18	2	14	3
TCTGATTCGGTGACTT	alt_2534_reverse	9	18	11	12	14	11	18	9	26	12
TTCCGAGGCTGAGTTA	alt_2534_reverse	27	26	35	33	45	34	42	29	32	21
TTTTAGTGAAGATAGG	alt_2534_reverse	38	35	43	39	67	46	53	32	57	35
TGAAAGGAGTTTCGAA	alt_2534_reverse	27	26	40	35	38	25	33	32	40	41
CTTTCCCCCGCATTTG	alt_2534_reverse	1	2	3	3	3	3	7	3	8	2
TGGTACATGACATGGC	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCGCCAGATGCTC	alt_2534_reverse	15	11	22	18	19	7	14	7	17	8
GTAGAACAGGAAGATG	alt_2534_reverse	5	2	9	4	4	6	0	3	3	5
TAGGCAACCTCACACT	alt_2534_reverse	2	4	8	3	10	1	4	2	2	0
AAGGTTTCGTAGATAA	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
CTACTTTGAGTCACCG	alt_2534_reverse	27	24	25	20	28	28	28	18	23	27
GGCGGGTTCGTCGTTT	alt_2534_reverse	42	51	38	45	41	28	59	41	54	44
TAATAAGGCTCTCCTT	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCCCGAAGTCTTC	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTTGTTTGGAACA	alt_2534_reverse	114	102	98	82	117	87	137	77	131	87
TTTGAACCTCTTCCCA	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTGAGCAGTTGA	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
GACCCAGCGTAGTTCA	alt_2534_reverse	35	55	34	32	36	34	53	28	75	47
TGTCTATTGTGAAAAT	alt_2534_reverse	24	37	35	21	34	35	36	25	36	22
TAGTCTCTTTTGCACT	alt_2534_reverse	61	60	77	48	64	46	81	51	73	43
TGTTTATTAAATATCT	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCTTATCAACATT	alt_2534_reverse	0	0	0	0	0	0	0	0	0	0
ATCGAATGAGGTTTCC	alt_2534_reverse	130	169	157	151	185	162	173	140	199	130
CATTCGTGTATGACAC	alt_2534_reverse	29	32	33	26	38	12	24	22	42	28
TCGATAGACGTTCGGC	alt_2534_reverse	48	68	61	65	59	61	74	58	81	49
CCTTTCATTTATCCGG	ref_5875_new	7	21	13	13	11	9	7	7	7	11
GTAGACGGACAACGAC	ref_5875_new	12	18	13	14	17	15	16	11	15	24
CTCTCAGATTCGTCCC	ref_5875_new	0	0	0	0	0	0	0	0	0	0
GCGAATCGGCTGTTCC	ref_5875_new	14	15	15	4	23	10	22	9	18	6
AACGGTGTTGATTTGC	ref_5875_new	0	0	0	0	0	0	0	0	0	0
TCGCGATTGTTTTCGA	ref_5875_new	73	64	88	60	64	54	67	52	78	43
CTTGTGCAATAATAGG	alt_5875_new	54	92	68	65	102	55	103	57	103	63
ATGAATTCAGGGGGAT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
TAAGTAGTCATCTTTG	ref_5875_new	31	30	21	15	35	11	39	20	29	30
CGGAGCTCTAGAACAG	ref_5875_new	0	0	0	0	0	0	0	0	0	0
ACGACTAATCACACTT	ref_5875_new	15	21	24	13	23	11	23	10	22	14
CGAGGTTGCTTCATTT	ref_5875_new	10	12	15	8	13	10	18	11	17	13
CTCTCCGGCCACTTAG	ref_5875_new	30	72	37	53	80	40	70	32	78	30
CTCGCTCAGATAATAT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
TTACTCCTTCCACAGC	ref_5875_new	35	55	40	37	47	45	66	37	53	27
TTGATTCGCTCGCTCG	ref_5875_new	12	17	12	10	25	13	14	5	17	8
AGCCCCCCAGCAGCCC	ref_5875_new	0	0	0	0	0	0	0	0	0	0
GCTCTCAAGCTGGGCA	ref_5875_new	69	73	68	62	96	62	81	56	68	52
CTTGGGTTTGTTTCTG	ref_5875_new	0	0	0	0	0	0	0	0	0	0
TTTAGGGAGAGACGCT	ref_5875_new	25	42	52	32	35	38	58	33	42	31
GTCACATGTTTGCTTG	ref_5875_new	0	0	0	0	0	0	0	0	0	0
CATGCTTGTTTACCTC	ref_5875_new	29	44	48	28	46	36	36	41	35	29
GGACGGTGTAGTGTTT	ref_5875_new	13	16	15	18	31	16	27	14	16	14
TCATAAGACTCCGTTC	ref_5875_new	6	6	7	14	13	4	11	8	14	11
GGCGTTCACTGCCAAT	ref_5875_new	24	23	29	17	27	25	40	25	47	20
GCGGGTAACGATGTGG	alt_5875_new	79	89	80	70	104	72	94	52	121	56
CTGCGCTCCAATTGTT	alt_5875_new	44	60	62	56	54	39	59	49	69	47
TACTATCACGATACTT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
GTACGCCTATCGATTA	ref_5875_new	11	22	16	14	23	14	19	11	16	6
CGTATAGTCTTTGTCC	ref_5875_new	0	0	0	0	0	0	0	0	0	0
CTTAACTGGTTCCTTT	alt_5875_new	128	205	145	147	193	134	216	144	198	129
TGAACGGGATGAACTA	ref_5875_new	17	36	39	19	29	23	26	41	41	30
TCATACTTTTCGGGCT	ref_5875_new	26	34	31	23	28	19	54	25	34	22
TACCTACCGAATATGC	ref_5875_new	0	2	3	0	2	0	6	0	3	4
CTTTCCATCCCTTTAG	ref_5875_new	17	20	19	18	36	20	20	17	22	19
TGGGGAGACATTTTTG	ref_5875_new	6	2	2	3	4	2	2	1	5	2
CGTCATTTTTTCGGGA	ref_5875_new	8	17	12	4	9	7	11	10	7	10
AGTGGAACCGCTGGTT	ref_5875_new	3	14	17	10	11	8	12	9	17	9
TTTTGGCCCAGGACAC	ref_5875_new	3	8	10	9	2	3	2	3	5	3
GAATCGGCTCCTAAAA	ref_5875_new	13	18	16	17	21	8	12	9	18	11
GCATTACTACACTCGT	ref_5875_new	11	13	9	9	15	9	30	7	18	13
GTGTTTCGTTGACATG	ref_5875_new	0	0	0	0	0	0	0	0	0	0
AGCCCCCCAGCAGACC	ref_5875_new	0	0	0	0	0	0	0	0	0	0
AGGTCTGTTACCGAAT	ref_5875_new	18	40	43	29	42	35	31	27	43	28
GGCCCAAGCTCGGCCT	ref_5875_new	64	44	42	49	49	44	75	40	61	34
TACCGGTCTGCCCCGC	ref_5875_new	26	50	46	30	44	34	47	38	48	20
CTTGGAGAACCCATAG	ref_5875_new	0	0	0	0	0	0	0	0	0	0
TGCATGTCCACTACGT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
CCCCAGGCATTTTCAC	ref_5875_new	17	22	28	14	19	13	17	23	17	15
ACTTTCTCTTATTGTG	ref_5875_new	0	0	0	0	0	0	0	0	0	0
GTTCCTCGGCACATCT	ref_5875_new	46	68	71	50	62	61	86	47	99	54
GCCTAAGTACATTAAG	ref_5875_new	0	0	0	0	0	0	0	0	0	0
AGTCTTGTCGACCGAA	ref_5875_new	0	1	1	0	1	0	8	0	1	1
ACATGTACCTTTAAGG	ref_5875_new	10	30	12	16	20	19	21	15	25	11
ATTCGGTAGGTGTTTT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
GGCAGTTACAGCAATT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
TAGGCATTAAGGGGGT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
ATGGCTCTGGTTTACT	ref_5875_new	28	13	18	25	20	16	21	23	38	25
GATCGTAATACGATTG	ref_5875_new	41	87	52	66	68	45	85	51	71	32
AGATCGTGCCGAATTA	ref_5875_new	0	0	0	0	0	0	0	0	0	0
GATCCTGATAATATCT	ref_5875_new	60	79	94	83	77	59	104	64	109	65
GCCGCTGTTGTCTGGT	ref_5875_new	9	11	6	13	9	6	10	3	8	7
GGGTCTAATTGTGCCA	ref_5875_new	17	24	9	7	29	12	32	7	36	4
GTATAAGTGAAGTTAG	ref_5875_new	28	38	19	24	22	20	38	22	29	19
AGAAATTCCTATCCTC	ref_5875_new	0	0	0	0	0	0	0	0	0	0
AAACAACCTAACAGAT	ref_5875_new	18	17	19	15	13	18	22	17	25	5
GGCAAATCAGTCATGC	ref_5875_new	93	119	89	79	113	88	145	78	144	75
AATGGGGCCCCGTGCT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
TCTTTTCGGCCACGAT	ref_5875_new	0	0	0	0	0	0	0	0	0	0
GCTGAAACCCGTCTGG	ref_5875_new	1	9	5	0	7	4	6	4	6	1
GCCATCTTCGTAATGG	ref_5875_new	7	10	9	5	13	12	17	20	11	3
GTTTACGCCTTTACGC	ref_5875_new	0	0	0	0	0	0	0	0	0	0
CACGATCCGCGTGGTT	ref_5875_new	24	23	31	32	16	23	20	40	19	25
ATATTACAAATTCGTT	alt_1678_negative	75	83	94	81	97	94	103	66	111	66
TTATTGGGTCATTAAC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTCATTTCACGGTGCC	alt_1678_negative	85	97	99	85	95	79	93	84	93	72
TTTCCCACGTTCCACC	alt_1678_negative	26	43	33	27	23	24	25	36	21	19
GCTGTCCTGCCCCCTA	alt_1678_negative	16	28	30	22	30	17	20	14	28	16
TCTACGCTCTTCTCAG	alt_1678_negative	8	7	4	7	14	8	9	0	9	4
CTTTATTTTCATAGGT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TCCGCGTTAGTAACCC	alt_1678_negative	59	73	78	53	72	64	77	37	72	47
GTATTCTTCCGATGAT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTCATCATATCAAATA	alt_1678_negative	319	298	369	333	301	303	350	295	368	288
CCCCTGCTTGGGCTCT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TACTCATGAGTCCATG	alt_1678_negative	1	19	3	2	24	6	15	10	19	5
GGACAGTTGTTGAACC	alt_1678_negative	89	110	119	119	145	96	121	79	159	92
TCGTGTTCTCTTCTTC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
AGCTGTTTTCCTGGCA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTAAAGTTAGCTTTTC	alt_1678_negative	87	101	73	67	91	62	98	74	96	56
TCGGCTGCACGTTTTT	alt_1678_negative	19	17	17	16	24	13	27	11	18	20
AGGCTACAAATTCATT	alt_1678_negative	15	28	22	11	21	17	36	24	18	14
ATGACGAGATGAGTCA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TGGGTCTCCTCTATGA	alt_1678_negative	39	50	49	43	52	41	40	47	40	32
AGAGCACTACCGTTAG	alt_1678_negative	16	19	24	15	19	19	19	13	27	14
CTTTATTTTCATTGGT	alt_1678_negative	210	205	207	165	209	166	237	179	236	163
GAAAGGGGGCCGGTGC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
GCCTGATTACGGCTTC	alt_1678_negative	153	167	207	161	171	108	160	149	179	146
GTGGTTCATCCAACCC	alt_1678_negative	36	54	46	41	51	39	67	38	63	35
GAGCTAATATTGGTAG	alt_1678_negative	44	50	40	51	59	38	58	42	70	29
TCTCATCTATTGCCTC	alt_1678_negative	43	41	48	39	51	35	50	44	56	43
AGCCATTTTTAACAAA	ref_1678_negative	64	108	121	69	128	86	117	76	141	81
AATGTCCATTGCTGTA	alt_1678_negative	12	7	10	14	18	16	14	15	5	14
CTCTCAAATGTACTTC	alt_1678_negative	5	8	8	7	6	7	5	7	5	3
GGCCGCGATCCATATT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
GCTCTTATGTAGTAGT	alt_1678_negative	11	14	5	7	17	13	12	14	11	5
TTCATACATGTTTTGA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
GTTCGAAGTTCCTCCT	alt_1678_negative	81	96	88	59	84	72	93	71	91	69
TCCGTCCCGTAACCAG	alt_1678_negative	69	59	52	56	61	53	82	46	77	54
CTGTGTGGGATACTCA	alt_1678_negative	19	59	17	20	39	15	48	17	48	14
CTGTGTAGCCCGTTTT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TCTTACTATGTGGCGC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTTGTGTCCCCCTGAA	alt_1678_negative	6	25	10	15	20	13	22	8	15	14
CTCTGGTCAGCCTGAA	alt_1678_negative	8	4	8	4	9	9	8	2	11	3
CCTTTTTTGTTATAGT	alt_1678_negative	31	53	31	32	48	21	58	25	46	30
CCGTGGGAACCTTTAA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
GTTGGCATTTAGCAGG	alt_1678_negative	14	24	24	14	32	14	30	20	23	18
GACTCGAGGCTTGTAA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TAGATTACTGGGGCAC	alt_1678_negative	5	4	6	3	8	4	11	5	14	3
CATTCATTCAGTGGAC	alt_1678_negative	17	7	13	18	13	14	20	12	20	4
ATACAATCATCTAGAA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTTGCCAGATCTATCA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TACAAGTTGAATTGTA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TTCTCGCATCTTCCCC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TTTTCATTTATTACTG	alt_1678_negative	24	28	26	18	26	21	33	21	22	19
GGCCCCAACATCGACC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TCAGGTCACGCCCCCA	alt_1678_negative	31	36	37	33	34	20	50	19	35	20
CTGGTAGTATGACCAA	alt_1678_negative	15	10	15	14	9	6	21	9	8	13
TGGTCACAGGTTGTAA	alt_1678_negative	65	77	83	64	66	58	79	51	72	65
TTCTCCCTTCGGAGAC	alt_1678_negative	18	16	13	21	29	14	19	16	25	21
GTATGGGTTTTCTCGT	alt_1678_negative	26	27	19	24	35	14	24	26	46	14
TAAAGGACCCTGTAAC	alt_1678_negative	59	80	60	65	77	50	83	51	95	60
CAAACTTTAGGCTCGT	alt_1678_negative	19	23	25	19	16	22	19	23	34	13
TGAGTCTTTTCTTGGT	alt_1678_negative	17	9	19	7	10	12	14	9	18	8
TGGCGCAAACGTTCTA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TGTAGATTTGATGGAA	alt_1678_negative	69	53	69	72	58	58	57	49	77	47
CCATGGTATAGTTGTA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TTTATCCTGTTAATCG	alt_1678_negative	31	46	46	17	31	47	43	32	34	30
TATTGTCGAACCTACC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
GTTCCGTAAGCTCAAT	alt_1678_negative	16	28	17	24	15	14	13	17	20	13
ACGAGTAAATTATTGT	alt_1678_negative	37	28	29	18	42	12	31	18	29	16
AACTCCCCCCCAACTA	alt_1678_negative	6	24	14	12	19	10	16	13	30	8
TTCCGTGATGTAAGTT	alt_1678_negative	9	16	10	20	15	8	13	10	18	15
ATGCACGATGTTCAGG	alt_1678_negative	42	38	38	45	30	34	40	26	41	39
CGGGGCGCGCTTCGGC	alt_1678_negative	21	18	26	25	22	20	29	24	23	18
GTAAGTGTATTTACTT	alt_1678_negative	1	6	3	3	8	4	8	3	8	4
TGAGAAACGAAGTCAT	alt_1678_negative	101	111	110	109	87	89	123	97	95	86
AATTAATAAGTTTTCT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTTCGGCGGTCTGCAT	alt_1678_negative	29	28	31	26	43	26	22	27	32	22
GTTGTTCAACTTACTT	alt_1678_negative	22	21	23	15	20	16	25	8	24	14
CTTGTTCGCTCCCCCC	alt_1678_negative	35	38	44	30	21	27	35	32	25	34
GTAGGAAGCGGTTTTA	alt_1678_negative	23	33	28	30	30	21	42	25	37	14
GTCTTGACGAAGATAG	alt_1678_negative	78	77	101	75	77	74	84	92	100	67
TGGGTTTTTAGCCAGT	alt_1678_negative	9	28	16	17	35	20	30	10	29	21
ATTTGTATAGAGGAAT	alt_1678_negative	30	31	34	29	49	28	49	30	45	33
TTCTTGTAGTCCTTTT	alt_1678_negative	14	11	12	11	12	11	13	7	17	9
CACCCGCCATAGAGTA	alt_1678_negative	17	39	38	32	49	33	37	36	48	28
AGATATTAATTCCTTC	alt_1678_negative	25	33	35	29	18	26	37	19	35	24
CTCGCAAATGCGCGGT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
ATGACCTATTTGAGGA	alt_1678_negative	70	74	97	79	125	72	80	62	80	76
TCTGCACGGGACTCTG	alt_1678_negative	24	33	23	17	23	21	19	14	31	18
TCTGAGATTCAGTGCC	alt_1678_negative	7	13	10	6	3	5	8	3	11	3
ATAACCGACCTCGCGT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTTGAGTTTTATACTC	alt_1678_negative	91	75	98	80	91	66	89	58	109	77
GTGCTTCACATACTCG	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TATTCGGTCGGTTTTA	alt_1678_negative	25	26	17	17	27	15	27	19	13	12
TCTTCACATCTGTCGT	alt_1678_negative	8	10	7	10	4	7	3	4	9	5
TTTTTATGTAATACTC	alt_1678_negative	80	97	125	76	114	94	97	71	103	85
CTCGCTTGTGCGCAAG	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
GCTCTCTCTTGCTAAA	alt_1678_negative	42	50	40	36	35	31	63	25	47	41
GGTCCAGACCGACACA	alt_1678_negative	10	12	9	14	9	2	22	12	14	10
TATGCGTAAGATTCGT	alt_1678_negative	45	67	60	49	74	50	65	31	72	40
TCCGCGGTACCATATA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TCACCGCTATAATTAA	alt_1678_negative	23	45	24	22	42	17	42	25	37	22
CATCTTCCGATTTAGA	alt_1678_negative	14	10	15	12	7	7	12	18	10	7
CCTCTACGTGTAGCTA	alt_1678_negative	13	34	22	26	49	20	39	17	30	17
CTACTCTCTATTAGCC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTCCGTGTATTTTGTA	alt_1678_negative	4	11	4	4	8	3	7	3	11	0
CGTTGTTATGAACACG	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTGTGTAACACACGAG	alt_1678_negative	29	46	47	37	49	34	44	33	38	32
GTACATGTCGTCCCGG	alt_1678_negative	8	8	14	5	16	6	12	6	11	6
ACTGAGGTGAGATCTT	alt_1678_negative	9	5	17	5	17	7	10	6	12	6
CGTCTAGGGTCAGGAA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTAGAGGTTAGCTAGT	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
AGGTACATCTTCTCTT	alt_1678_negative	90	102	124	81	88	86	99	72	87	75
TGCTTCATCAGTACCC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
CTCGTTCGATTGTGAA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TGCATATAAGGCTTCC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
ATCTGACCACGGCAGC	alt_1678_negative	36	34	37	28	33	29	34	28	37	34
GTTCCGGATGCCGCTC	alt_1678_negative	13	16	27	22	15	14	14	14	18	15
TCGAAACCCAGTTCCT	alt_1678_negative	9	15	13	12	30	19	11	10	17	18
AGTACAGGCGGTAAGA	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
TCAAACAGGGCTCAAT	alt_1678_negative	59	76	86	55	56	64	71	65	60	46
ACAGGTCTCTTATCAC	alt_1678_negative	0	0	0	0	0	0	0	0	0	0
GAAGGATTGAATGCTA	alt_1678_negative	0	5	5	5	11	1	3	5	7	2
TACTCGTAGGAGGATA	alt_1678_negative	39	53	41	34	42	33	53	36	56	44
GAATATGCTATCTAAC	alt_1678_negative	15	30	28	21	16	21	28	21	24	18
GTGCCTTTCGTAAATG	alt_285_fdr	24	27	39	26	42	34	36	20	39	33
GGCTCCTGGAGACGAG	alt_285_fdr	17	17	26	13	16	14	13	18	15	15
GGTTCTTTATTCGTGG	alt_285_fdr	26	17	12	13	12	6	9	11	6	14
CCATCGTCGAAATATC	alt_285_fdr	5	13	6	7	17	8	24	4	17	9
CACACAGGGTCCATCC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TACCAGATATGTATTC	alt_285_fdr	8	6	13	4	19	8	9	13	12	6
GTTTCGCTCGCTGGAA	alt_285_fdr	1	1	3	1	1	1	2	1	1	2
GCGGGCCTTGTCGTGG	alt_285_fdr	21	29	16	25	27	19	16	19	20	11
AAGTTGCGATTTCGTT	alt_285_fdr	28	27	30	33	26	32	26	30	37	28
CATTAACACTGCTACC	alt_285_fdr	19	16	15	24	26	19	22	27	20	21
TATTGGCAAGGTAGGT	alt_285_fdr	7	13	11	11	9	10	18	6	12	11
TCGCCCATCGAGGTCA	alt_285_fdr	19	24	33	18	29	24	18	24	22	23
GGTGATACGGACTTAG	alt_285_fdr	14	14	17	14	11	13	16	19	28	15
GTTTTCTATTGCGGGT	ref_285_fdr	213	159	261	171	151	169	148	188	166	177
TGAATTTTGCCTGCTA	alt_285_fdr	1	5	1	1	0	3	3	0	5	3
CCAATCGTCATGAGAA	alt_285_fdr	17	22	24	19	33	22	28	16	30	28
TCAGAGTTCGTATCTT	alt_285_fdr	23	39	42	30	31	32	53	26	48	32
CGTTTAAAAGTCTTTC	alt_285_fdr	22	27	13	20	33	18	25	20	30	22
CGGGGGTTTCTGGCTT	alt_285_fdr	84	47	72	64	67	58	61	52	62	56
ACGCCTGCATCATCAA	alt_285_fdr	27	20	25	15	19	21	16	13	28	13
TCCCTCCTCCTTCACT	alt_285_fdr	3	4	2	3	2	1	8	2	3	2
TTAGAAGAGTCTCAAC	alt_285_fdr	53	90	117	62	82	64	95	48	82	62
TTTCAATGTTTATCCG	alt_285_fdr	7	9	8	5	9	5	14	2	5	5
TGATAATTGGCAAACA	alt_285_fdr	29	31	34	39	31	35	33	29	45	30
CTAGCGAGCAGTTTTA	alt_285_fdr	45	62	38	56	45	52	53	52	59	33
GTGCGCTTGCTGCTGA	alt_285_fdr	55	62	57	63	61	57	59	56	53	76
AAGCTCCTTAGCTTAG	alt_285_fdr	11	16	10	8	18	9	16	12	23	8
TCTTAATTGGCCTTCC	alt_285_fdr	90	58	111	103	85	82	78	76	97	65
GGGAAATCTGCTGTGC	alt_285_fdr	3	2	4	3	4	1	2	1	3	4
AAACCCGCGGTGACTT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCGGCCCCGATTG	alt_285_fdr	37	27	36	35	37	35	38	35	29	38
GGGGTTGATTACACTT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TATAGGTCGTTTCTTC	alt_285_fdr	14	20	29	10	16	16	7	21	27	4
CGCTCGCAACCCATAG	alt_285_fdr	27	43	62	25	37	23	41	31	44	22
TCCGGTTTCCCATTTT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCTGACTTTGCGT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCAGCTTGCGACA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
ACAACTTAGTAAAAGG	alt_285_fdr	147	134	160	137	160	151	129	121	161	107
TTGGATTCGGGCCTGG	ref_285_fdr	129	118	139	125	108	117	103	104	119	120
CGCTGTAAAAATAACC	ref_285_fdr	103	53	88	82	55	87	53	81	81	85
TCTGGACTTGTTATAA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCACTAACTGACA	alt_285_fdr	57	102	93	71	75	69	74	68	92	48
GGGCTTTACCACTAAC	ref_285_fdr	31	32	23	32	51	34	44	30	44	32
GAGCCGGAGTTAACTA	alt_285_fdr	19	13	24	23	5	15	11	14	16	18
CGATCATGCTTGCTTG	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCCCCCTCCGTAG	alt_285_fdr	2	14	8	7	8	9	14	6	13	4
GAGGATTACCTGATCA	alt_285_fdr	31	38	50	40	50	39	37	44	48	42
TACGCCGCCAAACACA	alt_285_fdr	6	3	11	5	4	6	8	8	1	2
AAATGTTGCCTAACCG	alt_285_fdr	30	23	28	34	31	21	32	32	30	32
AGCTTCTACTACGGGT	alt_285_fdr	69	95	117	90	124	96	122	91	129	81
TATCCTAGCAGCGCAT	alt_285_fdr	12	11	16	17	17	8	10	14	13	7
TGCCGACTGTGGTGCA	alt_285_fdr	13	19	9	17	13	17	18	13	27	16
GTCTGTAACCACGCGC	alt_285_fdr	56	38	66	34	38	40	50	50	52	24
CTCATTGTCTGCGCGG	alt_285_fdr	23	49	40	28	32	30	37	29	26	28
GGTTGACTACCTTTGC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GTTATCTTTCGAACTG	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
AATGTCCTATATTAAA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCAAATTTCACGT	alt_285_fdr	34	41	35	41	37	30	51	37	45	40
TTTTTTCCTGACCTAC	alt_285_fdr	49	85	54	60	76	39	93	58	86	42
ACCCTTCCTCGTACGG	ref_285_fdr	88	76	106	93	115	86	100	81	85	86
GATTCTGATTTCCAGT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GCAATCTCATACTCGT	alt_285_fdr	12	16	26	22	16	16	14	13	22	22
ATATATTCTGGGTCAG	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GGGTATGGCGCTGAGA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GATCTACACCGCCCCG	alt_285_fdr	21	19	15	7	38	12	25	11	36	15
TGTTTCCTTTTGTGAC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGCGTATCTTGTA	alt_285_fdr	31	31	35	20	35	26	27	20	26	22
GACACTGTCAAGCGTT	alt_285_fdr	52	73	66	38	60	57	79	40	57	50
TTAGTGGGTACCCTTC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GTTGACGAAACGGCGT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TATACTTGTTCACAAC	alt_285_fdr	25	36	21	33	32	25	24	24	23	23
CTAGCATGTTTCCTTC	alt_285_fdr	40	52	40	50	48	46	53	33	57	35
TTACTACCTGGGATTA	alt_285_fdr	16	19	19	16	25	15	28	26	16	17
ATGATACCTGAGTAAT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GACTATTAACGCAAAC	alt_285_fdr	88	93	83	77	79	87	69	74	88	88
GCCACTTGAGGCCAAT	alt_285_fdr	35	62	60	53	54	35	56	40	52	50
ATAGGGTGGACTTCGC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGCCAAAGGGTTG	alt_285_fdr	8	8	3	11	6	9	7	12	7	5
GCTGGCTTGTAACAGT	alt_285_fdr	50	62	82	50	54	58	92	57	83	66
TATGTGACCGGCATTA	alt_285_fdr	18	21	25	28	26	27	13	18	22	25
TAGTTATTCCTATCTA	alt_285_fdr	24	18	31	13	19	29	17	27	23	28
GTATTCGGTCTAGAAC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAATCGATAGAGC	alt_285_fdr	194	196	261	209	202	187	275	164	252	164
GCTTACCTGGCATGCT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGTGTGTCTAGGA	alt_285_fdr	3	2	0	2	0	2	2	3	1	0
GGTATATGAAAATTTT	alt_285_fdr	97	94	142	117	101	96	105	85	107	97
TGGCCCGGTTATCTTG	alt_285_fdr	98	70	94	82	82	72	79	81	91	62
AGTCTATGAATGTTAA	alt_285_fdr	104	112	115	105	144	100	127	129	118	99
AAGTCCTTCTCCCCGC	alt_285_fdr	6	34	15	1	35	8	31	8	30	9
TTGGATGCAGCACCAT	alt_285_fdr	12	11	10	13	9	13	13	4	24	12
TCGGTTGCCTTTGGTT	alt_285_fdr	28	17	27	12	26	9	18	17	10	15
TGTGAGGCAAGAATTT	alt_285_fdr	47	45	49	47	35	48	40	38	60	37
GACGTGCCAAGCCAAT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
CATAGTCGTCTACTCG	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTGGATTTATTT	alt_285_fdr	6	12	10	11	11	7	16	7	19	8
TTAATAGTCTCTTTTC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCAGGACCCTCG	alt_285_fdr	40	45	53	34	48	35	45	47	54	39
AATAATCAGACCGAGA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TACCTCTCCCCAATGC	alt_285_fdr	2	5	1	1	3	1	2	2	2	1
GCTCCTATCTTCACGC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TCATATCAAACTGTAA	alt_285_fdr	238	249	262	217	280	216	230	246	277	186
ACTACCTTCTATGTAT	alt_285_fdr	64	107	98	73	89	55	66	63	80	70
ACCTTGGGTTGCAGCA	alt_285_fdr	31	30	30	35	56	34	42	25	33	37
AATTGTAAGTATCTTA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAGAGGGAATTCA	alt_285_fdr	14	24	11	23	18	37	18	17	23	14
TCAATTGGCTAGAGGT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
AATCGGCATCTTTTTA	alt_285_fdr	73	58	91	63	58	69	71	80	80	55
CCAGTGGTCTTGTGAT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
CCGTATGGCATGTTCA	alt_285_fdr	7	15	4	6	16	3	12	4	9	3
GAAGCCGGCAAACAGC	alt_285_fdr	67	68	70	58	78	64	76	51	71	57
CATCGATTCAGGAAGT	alt_285_fdr	14	19	15	15	11	20	11	9	11	7
TATTCCCTACACATGA	alt_285_fdr	4	7	5	4	1	2	3	9	3	3
CGAGCGTCATCTAGGT	alt_285_fdr	84	76	107	94	93	74	123	76	96	77
CTGCTCGGTGCTTTTA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GGATAAAAGTTCTTGT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
CCTCAACAGAGCTCAA	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GCGCACTCTAGATCGG	alt_285_fdr	45	58	71	48	62	56	55	56	88	48
ATATTTTTACACGGGC	alt_285_fdr	34	23	47	41	35	42	44	49	38	24
ACTATATATTCTTGGA	alt_285_fdr	20	29	20	24	20	13	22	15	6	9
CTCGTTGGATCACCGT	alt_285_fdr	1	0	0	4	2	5	0	0	0	0
TCGTCCATCTTCCTTG	alt_285_fdr	71	62	78	71	64	67	78	61	76	59
CGTCTTTCCGGAACTC	alt_285_fdr	15	18	25	21	33	15	22	22	37	14
GCTTCAAGTTTTGACC	alt_285_fdr	17	17	20	10	16	16	24	9	20	14
CATTTGTTTGCCCGTG	alt_285_fdr	89	86	107	72	68	67	77	83	70	66
TGTTACTTCGCAAGTG	alt_285_fdr	0	0	0	0	0	0	0	0	2	1
GTGGTGCTCAACCAGT	alt_285_fdr	56	73	63	64	68	45	70	52	82	51
TGAGTCTTTTTTCCCC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
CTACGGCAACCTCGCG	alt_285_fdr	15	11	23	7	8	16	28	20	18	16
CAAAACGTACCGTTTT	alt_285_fdr	20	23	18	20	28	15	18	17	13	13
CCGGAACACGCTGCTG	alt_285_fdr	73	67	86	68	64	91	60	52	59	55
TCATTGTGTTTGCACA	alt_285_fdr	15	39	26	18	21	23	33	20	35	16
CGTGTGCACTTCTGCT	ref_285_fdr	58	36	55	46	39	38	39	51	41	47
TGTGGCGACCGTCCGG	alt_285_fdr	7	10	9	5	1	2	4	1	8	6
CCTTCGTTCTTCTGGC	ref_285_fdr	5	21	8	7	19	5	24	5	27	7
CTCTTCAGCGTAATTC	alt_285_fdr	28	39	30	28	27	25	32	38	35	33
TGAACTTTTTATTTAT	alt_285_fdr	12	15	31	20	19	7	15	12	19	10
TGTCTATAGTTAACAA	alt_285_fdr	25	27	24	32	20	29	22	22	25	27
TTGAATCTATAGCCGA	alt_285_fdr	14	20	17	15	16	15	11	23	11	21
TACGTGTGCGATTCGT	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTGGTATAGGTTC	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
ATTACCTATAGTAACA	ref_285_fdr	84	105	113	97	117	79	123	85	131	103
AAGTAGGAAGAGGTCA	alt_285_fdr	47	44	58	56	38	46	44	38	67	41
CCGCTCTCCGTGGACG	ref_285_fdr	80	81	71	64	57	74	56	60	69	56
TCAAACTGTATCGCTG	alt_285_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTTAACGCTGTGG	alt_285_fdr	134	157	115	105	168	104	169	127	154	88
ATTTACAGACAGCTCT	alt_314_upstream	76	67	88	86	72	61	65	55	62	61
GTTTAGGCGTTCATAC	alt_314_upstream	28	29	43	24	23	22	20	23	28	29
GCTCCTGTTAAATGTA	alt_314_upstream	15	9	16	12	11	6	8	12	16	9
TGTATGTAGTTTCCTC	alt_314_upstream	14	29	13	24	20	17	16	27	22	12
CAAACACTGACGAGTC	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCCACATCACTGC	alt_314_upstream	6	16	12	13	17	6	18	11	24	9
TGTCTTAACCGGACCA	alt_314_upstream	62	50	78	42	56	46	64	37	55	36
CTCATCGTTCGCTTGA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGCTTTCGGTCCG	ref_314_upstream	14	14	10	14	14	10	19	12	17	11
TAAGTGAGTCATTGTG	alt_314_upstream	30	37	47	42	46	29	42	29	36	46
ACATGCTGTACTTTGA	alt_314_upstream	9	11	12	15	4	12	10	12	6	7
ACAGGCGTTTGGCTGT	alt_314_upstream	7	11	7	4	10	8	16	9	9	7
GTGTGCAAATTGCTCC	alt_314_upstream	312	335	349	330	326	277	380	281	396	286
AACCTATTCGCGTCAA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CAACCTATAACTGTTT	alt_314_upstream	1	6	5	5	4	5	2	9	2	1
CAGAGGAATAGTATAG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
AGCGACCGCTAGGTGT	alt_314_upstream	36	25	35	32	25	28	45	16	53	20
TCATTTTCATAACGCA	alt_314_upstream	10	6	22	8	13	8	5	7	11	11
GCGCTCTTAGCAATCT	alt_314_upstream	18	17	31	18	16	17	15	18	23	22
AATAATTTGATGCCGT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
GATAGCCAGACCGCTT	alt_314_upstream	3	0	5	4	1	1	7	3	2	4
TTCCAGCATCTAATAT	alt_314_upstream	41	24	56	34	52	44	43	41	48	32
ACAACGACCTCCGAGG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCAGCGTCACTTG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGCTTCATCATTG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGTGTCCCTAATC	alt_314_upstream	7	6	7	3	3	7	11	7	12	4
CCATAGATTCACTCTG	alt_314_upstream	11	13	4	8	14	8	11	6	12	14
ATTTTCCGAGTAAATT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CGATCCGTCACCTGTT	alt_314_upstream	73	100	76	71	102	53	120	80	106	62
TTGCGGAATGGATACC	alt_314_upstream	6	7	9	3	5	6	3	11	12	5
GCTCCACTTGTGTAGG	alt_314_upstream	51	79	78	58	94	46	89	45	79	68
ATCTATCATGCTTGTA	ref_314_upstream	69	75	102	82	81	89	81	83	81	87
GTCTACTACCACCTAC	alt_314_upstream	5	6	15	4	13	11	15	11	11	13
GCCAGATAATCTCTCT	ref_314_upstream	33	36	41	28	34	23	29	27	27	21
TGTTATGGTCGACTTT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCGGCGTGCCAGT	alt_314_upstream	32	24	19	19	25	25	24	23	21	13
GTGACATTAACATGGC	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGGTCATACCAT	alt_314_upstream	10	8	9	8	12	12	11	3	12	4
TCATATGCAATAACTA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CCTGTGAACCCAAGGA	alt_314_upstream	29	29	41	23	36	39	22	21	37	33
CAGCCAGATATAATGT	alt_314_upstream	7	69	13	9	88	11	79	14	110	5
ATACTCTTGGCGGGCG	alt_314_upstream	225	256	304	219	269	206	267	230	272	231
TCTACTATCTAGGAGT	alt_314_upstream	30	19	31	32	34	35	40	29	39	22
CGTTTGGCAGGTCTAG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGCTAGAACTTAG	alt_314_upstream	122	148	168	151	165	133	179	114	186	112
TCCCAGGATTCGACAG	alt_314_upstream	52	52	69	60	63	54	70	71	60	57
CGATTTTATCCCGCTT	alt_314_upstream	6	7	5	9	5	3	3	9	7	6
CTTATTCTCTGCTCGA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
ATGAAGCCCATGTTCT	alt_314_upstream	38	39	41	29	42	32	25	26	26	35
CAACGCATTTGCAGTG	alt_314_upstream	10	13	14	12	7	7	16	12	11	8
TATGTTCCTGTAGTTC	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTTGTGCGCCAT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TTATTACTTTTCTCTC	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCTGCCGCATAT	alt_314_upstream	13	20	17	20	34	23	23	5	21	16
ACACCCTGAGTCTAGC	alt_314_upstream	32	18	38	27	24	39	17	34	29	24
TTCAGGGACCTAGTGA	alt_314_upstream	60	36	55	56	49	58	46	49	55	53
GGCACATTATCTGACG	alt_314_upstream	31	19	46	30	34	32	34	35	34	27
TCCTGCTCCACAGTCT	alt_314_upstream	16	36	18	25	25	26	23	21	18	18
TGACACTTATACGTAT	alt_314_upstream	20	24	24	15	18	15	17	7	17	13
GGACCGTACCTGACTC	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
GACCTCAGGACTTGGC	alt_314_upstream	1	1	3	1	2	1	1	2	4	0
TATCTTCTGACAACGA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
GACTTATCAGTTCATT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CAATTTGGGTCACAGT	alt_314_upstream	43	65	55	47	52	34	52	36	47	37
TACCGTGTTTACGTTT	alt_314_upstream	236	257	298	324	278	226	296	252	265	261
TTAAGGGATGTGCATC	alt_314_upstream	93	96	109	123	89	91	123	97	144	92
TTCCATTTGATTTCTA	alt_314_upstream	11	18	12	12	12	14	8	13	12	15
TCGGCCTCAGGAATGA	alt_314_upstream	31	17	24	38	32	21	29	26	24	19
TTTAGACTTTATTCTG	alt_314_upstream	89	67	109	81	82	88	80	70	94	82
CCGGACACCAGTCGAA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTGCTCGCATGGC	alt_314_upstream	32	47	53	41	45	33	47	47	64	41
AGTAGGTCGAAACTTT	alt_314_upstream	16	13	21	12	22	16	11	13	15	14
CGACACAGGTCCTTTT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TAATGTCTCGTCCTCT	ref_314_upstream	123	112	189	143	122	133	139	138	140	120
TACTGGGGTGGACACT	alt_314_upstream	9	16	9	14	8	8	12	7	9	8
CGGCACATTCTAAATA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
AAACCATCACTGATTG	alt_314_upstream	53	87	73	60	74	33	61	54	62	44
TCAAGGCAGCGCTATC	alt_314_upstream	28	13	8	14	9	15	19	13	17	18
CAGCACGTTCAGAAAG	alt_314_upstream	32	28	38	36	24	44	33	23	28	34
GATTGATTTTTCCTGG	alt_314_upstream	22	38	38	39	35	32	35	28	41	23
GGCGCGTAATCAGTAT	alt_314_upstream	73	65	120	67	84	74	85	72	69	76
TATCATTTACGGTGCT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
ATCACTATATTTGCTA	alt_314_upstream	34	26	26	22	27	39	21	18	26	15
CGGTTTGTTAGCATTA	alt_314_upstream	33	43	41	38	26	48	42	33	33	23
CTGAACGTCAGGGTCG	alt_314_upstream	58	69	74	64	72	67	71	58	64	65
CTTACTTTCAATCTCT	alt_314_upstream	29	17	30	23	29	30	23	33	21	19
CACACTTCCCTCTATG	alt_314_upstream	3	36	4	6	29	4	51	4	52	1
CTCCCACTGGGCACGT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TGTACCCGCGTTTCAT	alt_314_upstream	173	160	184	180	141	146	175	180	197	184
AAACTCGGAAAACCCG	alt_314_upstream	43	54	59	56	42	63	36	47	43	40
ACCCGTTACCTTCAAC	alt_314_upstream	41	60	44	33	42	19	51	36	41	28
AGAGCTATAACCACGA	alt_314_upstream	50	55	71	36	44	35	53	35	52	42
GTCATTGTGCGAACGA	ref_314_upstream	25	33	34	27	30	45	39	20	28	45
CCAGCGTCTTTTTATT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGGTGAGTTATGT	alt_314_upstream	8	10	22	15	22	14	11	15	25	13
GGCATGCAACCGCGAC	alt_314_upstream	52	72	101	75	65	60	81	67	70	75
GGTGTGCAATAGATGT	alt_314_upstream	49	62	45	58	51	42	59	55	69	38
CGAACCCTGAGGTCTG	alt_314_upstream	36	36	41	34	37	34	33	46	44	34
AGACTTTTGTCACAGG	alt_314_upstream	13	13	27	31	13	21	16	16	19	13
TTTGCGTGTTGGAGCA	alt_314_upstream	26	17	24	21	18	19	23	22	24	17
TCCGCAGTCGAAAGGA	alt_314_upstream	25	17	22	19	15	10	10	20	16	21
GGAGATTTTATTTAAA	alt_314_upstream	4	9	15	9	12	17	14	12	14	11
TATGCGTAGGGCTGCT	alt_314_upstream	4	5	9	7	8	3	10	10	8	9
GGTTTCAGGATAATTT	alt_314_upstream	32	32	49	26	21	32	33	27	33	19
CTAAGCAGAAAGCATT	alt_314_upstream	69	45	72	53	58	51	44	50	51	54
GAGTATTTCACGTAGG	alt_314_upstream	16	19	21	24	8	22	17	12	21	9
CCGAGCGTGTTTGTTA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGGGTGTCGGGGA	alt_314_upstream	7	7	9	15	14	10	5	7	10	8
TACCTCGATTTGAGGT	alt_314_upstream	0	1	0	0	0	0	1	2	1	0
CTTTTGGTGATATTAA	alt_314_upstream	0	10	3	2	8	2	6	4	12	1
ACTGGGTTCGTATTAA	alt_314_upstream	22	9	13	25	9	16	18	19	16	15
CAAATCCGGACCTCTG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCTCTCGTCAGGC	alt_314_upstream	157	129	202	149	170	136	160	156	167	155
GTTGTCGTAACTTTCT	alt_314_upstream	6	5	16	7	6	13	11	13	7	7
CAACTGATTTACCTGG	alt_314_upstream	7	5	8	7	9	8	9	8	5	5
CCACATAGTTCGGTGG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CTAGTTCTGCCATAAT	alt_314_upstream	9	7	16	9	6	7	5	4	6	5
CATGCCCACATGTTTA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCGCAGAATCTAC	alt_314_upstream	10	16	21	13	13	13	13	16	16	12
GCGCTAGTTACTCGTT	alt_314_upstream	8	11	5	6	5	8	13	4	6	7
CTGAGCTTGAGCTGCA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTAAAAGTATAT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TTGAATTCGTACCTTC	alt_314_upstream	27	36	45	29	40	30	35	25	40	20
CTGGGAGGGTGCAGCT	alt_314_upstream	16	11	17	12	17	8	21	11	15	22
TAGACAGCCCTGGTCA	alt_314_upstream	8	12	9	9	15	13	12	4	7	11
CTGGGCCCCTCTCGTG	alt_314_upstream	61	62	69	55	68	60	67	39	81	59
CAATGGGTACCGGAGA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCCAGAAGCCTCC	alt_314_upstream	76	67	63	80	56	50	67	60	79	65
GGTGTCATCAGTGCTC	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTAGCGTCTTGTC	alt_314_upstream	41	31	39	33	33	29	33	27	33	28
CTGGCGGCTTGGCGTA	alt_314_upstream	47	34	62	41	45	55	35	36	46	33
TTGGGCCTAGCTTCCT	alt_314_upstream	9	6	12	8	9	8	6	9	10	9
CCCATGTCTGATGCAA	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CTCGATATAAAGGGGC	alt_314_upstream	29	15	29	23	15	32	23	23	44	22
CGTTTCTCCTGGTTCC	alt_314_upstream	25	19	12	30	14	17	16	10	15	18
TGCAAATATCAGCCTC	alt_314_upstream	13	20	21	21	29	14	17	13	12	11
CAGCTTTAAATGCTAC	alt_314_upstream	0	0	1	0	0	0	0	0	0	0
ATTCCGATCTTCAGTG	ref_314_upstream	63	58	59	45	67	61	53	45	49	44
TCCCGATCTCCCGGGC	alt_314_upstream	5	7	1	2	2	1	6	2	6	0
CCAAATATTTAATAAG	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCTAAACAGCCTG	alt_314_upstream	9	12	13	9	15	18	21	7	14	7
AGTCGCTCGCCCTCCT	alt_314_upstream	0	0	0	0	0	0	0	0	0	0
CTGATGGCCAAGGATT	alt_5822_new	44	55	56	43	60	34	54	34	66	35
ATTTGGACCTCTTCTC	alt_5822_new	5	13	10	4	7	4	12	1	9	2
TGTACCGTGTATTATT	alt_5822_new	13	24	18	17	21	11	18	7	8	17
TCGGAACCATATCATG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
AAACTGACGTAGCTTG	alt_5822_new	54	73	73	58	96	52	81	45	78	45
GGCATGCCTTTGAGGC	alt_5822_new	0	0	0	0	0	0	0	0	0	0
ACTGCCTACAGATGCC	alt_5822_new	9	31	18	8	27	18	22	16	27	16
TGCGCCTGTGTCTAGA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CTCGTCACGATTAACC	alt_5822_new	35	41	38	37	47	33	49	28	44	25
GTTCGAGCTCTAGCTA	ref_5822_new	33	53	45	38	62	30	67	40	50	29
GAATGTCGTTTTAATC	alt_5822_new	1	0	0	1	2	0	0	1	0	0
CACAGCCATCTGCCCC	alt_5822_new	0	0	0	0	0	0	0	0	0	0
ACGTTTGTTTTTAATT	alt_5822_new	27	22	24	19	29	17	26	15	29	28
TTTTCTGTTCTTACGG	alt_5822_new	18	30	22	28	24	21	48	16	26	27
CGCTAGTCGCCAATGC	alt_5822_new	25	76	49	45	101	56	67	39	77	44
TTTCTCCGTTGTTCCT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
AAGTATCCGTGTGTGT	ref_5822_new	44	62	50	33	66	30	65	47	65	34
TTTTTAGCAGCCTCCG	alt_5822_new	12	38	24	25	35	15	39	22	39	38
TCCCGAATTCCCCATC	alt_5822_new	40	62	38	41	59	24	72	25	72	34
AATGGGGATAGCTGAG	alt_5822_new	12	17	12	17	19	8	21	9	20	9
CGAGTGCCATGGTGAT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CCATTGTGATTTTTGC	alt_5822_new	37	35	43	52	68	38	65	32	70	47
CGGACCTCCACGTATT	alt_5822_new	4	19	5	3	14	1	11	6	17	5
TCGGTACGTCCTTTTG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TGTGTGCTTAGCTTAT	alt_5822_new	12	19	16	13	24	11	19	14	20	6
CTTATGGTTATATATC	alt_5822_new	8	37	27	14	26	15	41	20	41	11
TTGGAGGAGCGACGCA	alt_5822_new	42	42	40	34	64	33	69	40	56	27
CAGAAATTCTTTTGGG	alt_5822_new	1	5	1	6	10	9	5	2	11	7
GATTAATAAAGGAGTG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CGGCCGGTAACGAAAT	alt_5822_new	15	30	19	22	42	6	30	10	25	12
TTTCTATTATGTAAAC	alt_5822_new	78	99	97	76	96	89	126	74	113	77
ACTCCTATCCGAGTGA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CGTGCATTTACGAGAG	alt_5822_new	10	25	15	16	33	15	20	9	25	16
TGTGACACTAAGGTTC	alt_5822_new	7	10	2	13	9	6	18	4	10	5
CATTGAATTCTAGAAC	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CCATCTGGTTCCACGA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TCGTGCGTTCCAGTCA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TCTAACCTTTACGTTT	alt_5822_new	0	6	4	1	5	1	4	0	6	3
GCTAGTCTTCTATGAT	alt_5822_new	7	22	10	16	31	12	39	9	46	18
TGTCTCTTCTCGAACC	alt_5822_new	55	82	48	52	81	26	92	52	91	30
CGATGTTCACGGTAGA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GTGCTGATGTTTCATA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TAGCTTCCTCGTTACC	alt_5822_new	7	8	4	2	8	3	10	3	15	6
GTAAAACGTTAATCTC	alt_5822_new	8	8	10	12	15	13	15	6	10	7
GACGATGGGATGATGC	alt_5822_new	26	64	50	34	53	32	55	24	78	41
TTTTTTCGATCAGCTC	alt_5822_new	18	17	17	11	36	17	37	12	20	12
CTTAGGGTGAGATCTC	alt_5822_new	7	13	9	5	20	14	13	7	21	5
AGCGATCGTGCCTCAT	alt_5822_new	64	73	66	60	99	65	102	40	86	35
TATATTCCTCCATTGT	alt_5822_new	95	125	131	91	120	77	156	73	139	83
TCAATGCTTGGTGCCC	alt_5822_new	13	16	35	14	34	24	31	22	23	12
TTATCGAAAAGTTCGA	alt_5822_new	25	25	39	19	32	31	29	21	24	27
GGTGGGCAGGCTGCCT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CGCGCAAGACGGCGAA	alt_5822_new	82	122	123	110	164	77	175	74	154	85
CTGCAACTGTTGGCCT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
ACCTTTCGTGTGTTAT	alt_5822_new	11	22	11	17	24	12	28	12	26	14
TAGCCGGAATCGCTAG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GTCACTCATTCTCCAA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TACCCAACAACGCATC	alt_5822_new	0	0	1	2	1	4	3	4	5	2
GTGTGCGATTCAAAAC	alt_5822_new	5	2	2	0	1	2	2	3	1	1
TGGGTGAACATCTCAC	alt_5822_new	144	228	187	133	211	146	257	129	259	131
CTCATCGCCAAAAATG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GTAGAACTTTTATCCG	alt_5822_new	10	8	8	2	16	13	10	4	14	7
TGGGCTTCTGGTGACC	alt_5822_new	3	9	8	2	7	2	6	6	6	5
GGGAAGACAGCCTGGA	alt_5822_new	26	50	38	33	60	33	40	28	60	28
ATATTGTCCGGTTATC	alt_5822_new	18	26	31	33	50	31	46	29	61	23
TATAGGCTCGCAACTT	alt_5822_new	4	8	18	8	20	8	11	12	17	10
GTAGCCTATATACGAC	alt_5822_new	2	3	4	1	5	2	0	3	2	3
TCCTTGAGCTTTGTCG	alt_5822_new	6	26	20	12	23	18	8	10	18	8
TCCTGCTCCAAGTGAC	alt_5822_new	21	39	37	22	27	22	55	28	42	24
TTCATGCGTCTTTATG	alt_5822_new	12	6	9	5	18	10	17	9	8	4
TATTTAGTGATTGTTC	alt_5822_new	51	59	34	29	61	30	81	21	69	29
TCGGATTATTTTGCCG	alt_5822_new	46	48	33	35	93	28	67	38	59	32
ATGAGTGTTCTAATTC	alt_5822_new	1	5	0	2	7	0	2	3	6	2
ATGACGGCAGTTAGCG	alt_5822_new	39	44	41	34	45	28	40	21	66	33
AGCGTTCTTTTGCGCG	alt_5822_new	10	30	22	17	30	15	38	20	31	9
GCATACCATGGCCCTC	alt_5822_new	0	3	2	2	4	0	2	4	1	2
CTGACGGATTGGCTTG	alt_5822_new	6	15	9	7	27	10	13	11	14	4
GTAAACTATGGGCAAC	alt_5822_new	35	39	51	50	50	32	46	35	55	38
TACTTTTCACCTCGAA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TAATTGCTAAGCATAC	alt_5822_new	14	19	13	14	21	10	35	17	32	19
TATTGTGGCATGCTTT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
AGGTCGCTTCGCCCTC	alt_5822_new	23	37	22	22	39	27	45	28	34	13
CCTTTCTTGTACGCAT	alt_5822_new	124	123	110	71	120	94	171	72	156	79
GCGTACCGGTATTTAT	alt_5822_new	34	95	55	36	108	39	97	47	116	40
AACTTTTGTACCGTTG	alt_5822_new	32	45	32	30	40	15	60	21	28	19
CTTTCCAAACTTATAC	alt_5822_new	5	8	5	6	9	7	5	4	8	3
CTAATCGTTTGGGTCG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TAACGCATTATCATTT	alt_5822_new	7	12	10	7	4	4	6	4	14	4
GTCACGAAGTTGATAC	alt_5822_new	20	26	18	10	25	17	17	20	18	12
TTGGACACAAGCTATT	alt_5822_new	14	16	17	9	17	9	19	21	17	11
GGTAGATGTTCACTCG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GTTTAATAAACATGCA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TGGGTGAACATCCCAC	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CAGCGTGAACTGCGGT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
AGATGCGTGTTTATAT	alt_5822_new	92	183	107	110	155	111	183	104	188	90
CTTTCCGATATGATAG	alt_5822_new	9	24	18	9	28	12	13	11	20	12
GATAGCCGGGCACACG	alt_5822_new	14	26	25	18	9	19	18	15	26	14
AGGCGGATTCCCGGCT	alt_5822_new	33	35	37	28	33	33	39	24	54	26
TATTTTACTTCTGCTC	alt_5822_new	17	42	33	23	43	23	54	31	43	17
GTACCTCTATCTGATA	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GGAAGCTCCCCCGCTG	alt_5822_new	94	105	123	77	106	69	122	59	146	87
TTTACATACTTACAGT	alt_5822_new	5	10	3	4	8	3	13	3	8	1
TCGGCTCCGTTTTATA	alt_5822_new	104	173	128	84	201	120	217	95	216	111
CGTATGGAAAATTCGG	alt_5822_new	46	63	37	39	76	50	54	49	80	34
AGGTCGAGGAGCATGA	alt_5822_new	21	34	16	25	38	23	32	20	30	18
TGCATCATTTGGACCC	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GATACTTTCAAGATTT	alt_5822_new	1	18	9	7	14	6	20	10	13	9
GATATATATACTATGA	alt_5822_new	6	7	10	9	16	10	11	5	23	4
TCTCGGGAATTCGCGG	alt_5822_new	0	0	0	0	0	0	0	0	0	0
TTTTCCCTCTGGGCAT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
CGTATCGTCCGATCCT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GCAGCTCTATATGGTT	alt_5822_new	0	0	0	0	0	0	0	0	0	0
GTAATATGAATTGGTC	alt_5822_new	13	18	22	19	23	9	20	10	34	10
TTTGCAGCGGGAATAT	alt_5822_new	52	85	68	48	80	70	138	60	106	56
GCCCTGCGACTACCTC	alt_3932_missing	9	2	5	1	4	4	6	7	4	3
GCACGTGGGTTTTTAA	alt_3932_missing	14	14	26	18	10	11	14	18	20	13
TACGTAAACTAAACTG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGTAACCCGGTTTGCG	alt_3932_missing	23	19	36	18	31	20	23	18	18	19
ACATGCTTATCGGATT	alt_3932_missing	82	54	104	104	70	122	62	84	79	100
ACCGCCTGTGTAGGGC	alt_3932_missing	113	78	117	126	84	97	62	93	89	95
AGGCATCGTTGTCATA	alt_3932_missing	81	52	85	50	48	57	44	65	50	43
TTCTTTATCTTTGAGG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TTTCCGTTGTTATTAT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TACATACGGCTGGTTG	alt_3932_missing	56	45	77	52	40	72	37	57	47	49
TACGATCGAAAACTAG	alt_3932_missing	51	27	51	43	25	50	36	43	29	36
GAGTGCCGTGTTACCG	alt_3932_missing	2	7	9	2	1	4	7	5	14	3
AACAAAGTTCTACCGT	alt_3932_missing	29	22	15	11	9	19	9	8	18	12
TAGGTAGGACCCCTCA	alt_3932_missing	16	10	16	17	8	17	11	10	10	11
TAGGGTTCCGTCTTTG	alt_3932_missing	45	35	54	31	34	36	34	25	40	40
CTGGCCTACTATTGAC	alt_3932_missing	27	22	44	35	23	20	18	31	20	23
GTAACGTTTCAGATAC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGACATCGGTGCAAGT	alt_3932_missing	18	12	12	10	5	10	5	6	7	9
AGAATGGTTGTGAGAG	alt_3932_missing	96	66	104	88	61	74	70	87	68	75
CTAAACCTTTGGTATC	alt_3932_missing	14	20	27	21	23	18	17	16	20	13
TAGCCCGTCTTGTGTT	alt_3932_missing	30	21	36	33	23	17	21	26	14	24
CCGCGCCTGAACTTAC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGGCCTTATAGTAAGT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
GGTATTCTGGCAGGCG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
GAGGGACAGTTCGTCG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
ATGAATATCCGATCGC	alt_3932_missing	7	5	7	8	1	5	5	5	3	7
GGGTCCTTAGTTGGAT	alt_3932_missing	12	3	14	14	3	13	3	5	9	7
ACACACAGACTTTTTT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGATCCAGCGAGAGCG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TCGAAGAGAAGGGATT	alt_3932_missing	8	10	24	11	6	5	6	12	6	5
TAGCTAAGCATATGTC	alt_3932_missing	48	34	89	76	45	44	42	62	40	62
TCCTTTGTACGTAGAC	alt_3932_missing	28	11	31	29	20	19	17	22	26	16
CATTTGATCCTACTGT	alt_3932_missing	1	0	5	0	0	0	0	0	0	0
CCCTCGCCAGCGCGGT	alt_3932_missing	99	74	117	113	81	100	79	110	74	91
AGACTGACCACAAGAT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGTAGACGTTCCCACA	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TCCGATTTCACACGGT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CCATTGATGTAGGTTA	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGATGGCCGTAGTCAT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TTCGCTTCTCATATGG	alt_3932_missing	2	3	7	4	1	6	2	5	2	6
GCACGGCAGGTAAGAT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TCCTTCCCCTCCCGAT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGGTAGTTAGGT	alt_3932_missing	117	89	183	155	77	122	103	155	104	100
GCGAAGCTCTCTTTAC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CAAATAAACATGTTTT	alt_3932_missing	16	15	27	18	6	13	11	19	16	20
TTCCCGGAAACATGAA	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TCCCTTAAGCTACTAC	alt_3932_missing	12	7	24	21	20	19	10	22	12	24
TGGTTCACGTTTCTAT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CAGATAGGGTCTGCAT	alt_3932_missing	50	34	60	50	38	48	39	63	27	38
ACTTATCCTTGTGCCC	alt_3932_missing	21	26	50	33	23	25	23	32	20	30
TGTACAATTGTCGGTT	alt_3932_missing	48	18	51	42	15	25	18	22	23	24
ATGTCGATTAAATTGT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CAGGTCTCTTGGCTTG	alt_3932_missing	32	31	37	23	23	37	26	44	20	29
TCGCATAGTGTTCTCT	alt_3932_missing	47	33	52	52	32	40	42	63	46	51
AGTAACCTTTCACTTG	alt_3932_missing	65	35	83	65	32	69	38	64	33	49
CATCTACCGCGGCCGG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
ATTATGGTCAGTTTCA	alt_3932_missing	17	13	18	32	16	15	25	28	18	20
CGCCTGAACGCACTTG	alt_3932_missing	20	18	26	19	16	18	16	12	17	17
TCGGCATTGCTACTTA	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGTTAATTTTTCATTT	alt_3932_missing	47	32	48	41	23	46	30	40	19	45
GTGGCGTCCGCAGGCA	alt_3932_missing	14	13	18	19	12	24	12	19	14	18
TGTCGTAAGGCTTGGG	alt_3932_missing	4	9	10	12	12	7	6	9	9	13
GGGCAGTCCATTCAGT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CGGCGCGATATACATG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CGAAAAACTTATGGTG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TCCTTGCACACGATTG	ref_3932_missing	128	114	168	153	102	135	91	130	101	134
TTCCATAGATTGAACT	alt_3932_missing	41	33	60	51	30	39	22	45	40	42
GAGTGGATGCCATCGC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
GTCTGGTGGTCTGAGT	alt_3932_missing	68	47	65	69	44	73	49	71	51	48
CTTCCGCATGGGTCTC	alt_3932_missing	32	20	53	29	25	29	23	34	31	22
GGGCGCCCGGTGGGCG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TGTTTGTGTTACCTTG	alt_3932_missing	23	31	41	30	35	32	19	29	27	33
GTACTCTCGACCTGAT	alt_3932_missing	6	1	6	3	4	2	4	7	4	4
TCGGGCTTTCCCTGCC	alt_3932_missing	171	103	208	159	118	180	104	177	128	134
ATGCATTATGGTAAGG	alt_3932_missing	19	11	20	21	11	21	14	25	26	25
TTCTGTCGGATCGGTA	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
GCTGCCGATACAGGTA	alt_3932_missing	55	36	61	73	46	59	51	47	47	47
TCGAGACCGGCTATCC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CCGCGCGTTGGGTGAC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CCATATTGGATGATGT	alt_3932_missing	8	4	12	21	5	16	7	6	8	10
CTCTATATTCGCGGCA	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
GAAGGCACGGATTTAG	alt_3932_missing	23	24	39	47	21	29	34	22	27	17
TATATGATGAACAATA	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TCCGTAATCCGCGGCG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
GTTTCGTCATAGTGAC	alt_3932_missing	27	24	30	33	17	31	14	28	22	17
GAGGCTTAGTTCTGGC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CCGGCAGCTGTTTGGG	alt_3932_missing	41	41	47	44	26	42	38	53	30	43
TGCCTTCCGTTAGGAT	alt_3932_missing	47	30	76	59	35	46	38	59	39	47
TCAATTCGGTCACGGG	alt_3932_missing	199	133	229	197	146	181	141	185	160	171
TTACTCTTTGCACGCT	alt_3932_missing	149	124	196	163	95	144	126	112	122	127
GTCGATGTCTCTAACC	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
AATGACACAGATTCGA	alt_3932_missing	19	15	25	21	15	10	21	17	16	17
CAGTACTCTCGCTCGG	alt_3932_missing	9	11	7	5	5	7	4	5	8	7
TGACGCCCATAGTTTA	alt_3932_missing	14	20	25	9	19	13	14	10	15	21
TTCAAAAGCTGTAATC	alt_3932_missing	28	33	43	38	17	24	27	29	20	16
GCGGACGTAGTATTCT	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
TCTTCTCGAGTGGGAG	alt_3932_missing	0	0	0	0	0	0	0	0	0	0
CTAGGGGTGCAGCGAT	ref_3569_reverse	81	64	81	73	53	77	54	80	47	72
CTCATGGATGAACCTG	ref_3569_reverse	57	48	68	55	41	54	27	45	26	42
GATGCGTATATTCTAA	ref_3569_reverse	118	80	182	134	88	116	115	112	101	121
TTGAGACGAGTTTATG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCAAGTTTATGGT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GCACGGACCTTGATAC	ref_3569_reverse	65	35	86	51	31	57	27	57	42	61
AATGTTTGCATGTCTG	ref_3569_reverse	16	14	18	15	9	22	9	15	9	10
CATTACATCTACAGCA	ref_3569_reverse	98	65	108	132	84	95	73	72	75	74
GTGGCGCACTCCCGTT	ref_3569_reverse	10	9	4	6	5	4	8	7	13	5
TCTGATTTTGATCGTT	ref_3569_reverse	39	24	43	33	22	20	41	34	33	20
ACTTGTGAATCAAATC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTGATACGTGATT	ref_3569_reverse	124	94	149	146	136	135	103	121	125	92
CTAAGTTATGATTTTA	ref_3569_reverse	8	4	7	9	7	6	9	8	6	3
GGGCCCAACTTTATGT	ref_3569_reverse	68	36	82	71	46	72	55	66	55	52
AGCCAACCAAGGTAAA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GAGCAATTAAACCGGT	ref_3569_reverse	1	1	3	0	5	2	5	1	0	3
CAATATCTAGAAAATG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTTATTGTTTCG	ref_3569_reverse	25	12	21	16	16	18	14	15	15	20
ATATACGATTTGCGTA	ref_3569_reverse	6	0	0	0	0	0	1	0	0	0
ATGCATAAACACGTTT	ref_3569_reverse	38	29	68	71	24	44	36	40	29	34
ATGTCTACGCGGACGG	ref_3569_reverse	184	127	201	191	110	181	112	161	126	147
TGTCATACATATACCA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTCTCTTGGCTAA	ref_3569_reverse	54	45	62	44	42	53	45	55	42	43
AGTGGGGGGGACGAGG	ref_3569_reverse	68	56	76	68	31	39	37	54	40	29
GCAATACGATCTTGTG	ref_3569_reverse	14	8	13	21	20	22	13	22	10	21
CAGGTAAGTATAGTTA	ref_3569_reverse	63	29	69	63	35	40	40	66	33	36
GTTAAGCCACTACGCA	ref_3569_reverse	26	25	27	32	22	17	13	17	25	24
CTAGGTCTATTCCCGG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GAATGCTGTGCTGGTC	ref_3569_reverse	7	6	5	1	2	1	2	5	0	5
CAGCAGCCGCCATTAC	ref_3569_reverse	44	61	58	51	53	42	60	46	59	45
ACTGGCGCTAAATACC	ref_3569_reverse	173	117	194	172	128	177	138	164	123	138
GGCAGACCCGTAGTCC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
ATATTTTCCTAGCCTC	ref_3569_reverse	103	58	118	100	68	104	83	71	46	75
TTTCGTGGGTTACGAC	ref_3569_reverse	35	27	44	26	14	25	26	28	21	22
TTCTCTACAGATCAGC	ref_3569_reverse	28	29	31	31	14	17	13	27	25	26
CAGTCTGTCAGTACGC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
AACATTCCCTTAAGGG	ref_3569_reverse	30	18	44	37	24	25	27	34	19	30
CTCAGAATCGATTTAT	alt_3569_reverse	48	29	54	45	27	44	42	45	47	34
CGATGTATCAGGATTT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCACCTACTAGTT	ref_3569_reverse	50	37	43	48	28	34	21	34	29	44
GTTCTACGATACGTTT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTTGGACTACTCG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTGTCGGCGGGAG	ref_3569_reverse	105	73	118	118	88	108	56	80	88	115
GCGACGTTTTGCTTCG	ref_3569_reverse	57	46	69	52	45	48	39	60	57	44
TTATCGCGTAATGGCT	ref_3569_reverse	56	34	70	52	43	70	38	54	52	57
TTTAAGCAGGGGTACG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTCGAGATAATCG	ref_3569_reverse	131	101	142	115	96	109	87	96	76	89
GCTTCCCGATCAGTGT	ref_3569_reverse	76	43	107	77	54	77	58	58	57	77
TGACGAGTCATTTCCC	ref_3569_reverse	63	32	84	59	26	61	35	58	39	64
ATTGTCGACACTGTCT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CCTAACTTTGCGTAGG	ref_3569_reverse	40	46	57	36	38	37	29	33	30	40
ATAAACTCCCCCTTGG	ref_3569_reverse	26	18	41	21	37	36	25	17	19	20
CAGTGAGGTGACATCC	ref_3569_reverse	49	23	61	60	38	43	30	46	42	40
TTGGCGACCATCCTTT	ref_3569_reverse	81	65	129	121	98	110	86	103	73	95
TCAGGCGACGTGGAGC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CCATAAGGATTTTGTT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
ACTGGCGGTTTGGTTT	ref_3569_reverse	17	16	19	28	16	18	20	19	15	17
TAGCGTCGCTGTCCCT	ref_3569_reverse	14	20	18	16	9	14	12	9	9	13
GTAAGGTCTCGATCTG	ref_3569_reverse	7	5	8	5	9	7	4	10	3	5
ACCGGTCATCACTTTC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TACACCAGTTTTAATT	ref_3569_reverse	38	25	42	49	28	20	43	34	29	22
AGACCTACCCGACGGA	ref_3569_reverse	103	80	140	117	90	98	95	91	113	107
CACCTTCGGTTCTAAC	ref_3569_reverse	61	49	67	76	49	69	54	74	55	76
TTATCACTGTGATGAA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TCGATTATCCTTTTAT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGTAAAGACTCTT	ref_3569_reverse	78	46	90	76	65	72	66	64	58	59
TAATCCGACCATCGAC	ref_3569_reverse	37	39	47	43	31	55	18	40	40	54
GTTTTTGTCTAAATAT	ref_3569_reverse	184	118	169	164	97	176	113	167	112	124
ACCTACGGAACCGCGT	ref_3569_reverse	31	29	31	39	37	34	23	39	24	35
GCCAGCATTACTCATA	ref_3569_reverse	9	31	28	14	31	15	19	25	35	18
TCCGTGCAATCCTGTT	ref_3569_reverse	58	70	67	67	35	55	56	59	65	46
TATCATCCTTTCACAT	ref_3569_reverse	216	119	238	193	158	198	145	177	137	200
TGGCCACGTCGAGTAG	ref_3569_reverse	92	91	126	109	96	96	86	90	69	95
TGAGTCTAATTTCTTC	ref_3569_reverse	14	33	28	26	18	22	22	13	19	17
TTTCCTATGTTGGGTA	ref_3569_reverse	34	20	36	37	29	44	24	27	34	32
CTTTATCGACGACCTG	ref_3569_reverse	20	9	15	7	8	14	14	10	12	9
AGTCGTCCGCCCTGAA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCCGATGAATCGC	ref_3569_reverse	40	25	56	44	37	32	25	32	24	31
GGGTTCAGAACGTCAA	ref_3569_reverse	323	230	376	322	250	308	253	274	269	300
CCTTTTATCCGCTCCA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGCTTTCTTTAT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTGGTCATAAGTC	ref_3569_reverse	74	51	95	76	51	67	61	67	44	64
TCAATGGCCCAGCAAT	ref_3569_reverse	11	1	17	8	4	16	8	8	7	10
TTTTTTTTTAAGATAA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTACGTGGCGCAG	ref_3569_reverse	21	16	31	35	13	15	10	22	16	19
AAGACGCTCGGAAAAA	ref_3569_reverse	40	20	54	43	33	45	33	33	36	32
CTTTACTTATTATCGT	ref_3569_reverse	9	15	21	16	9	12	14	7	8	13
CGAGGTTTGCGTCACA	ref_3569_reverse	114	74	148	121	79	124	77	128	41	140
CTCGGTATGGTCTCAG	ref_3569_reverse	32	17	23	15	16	16	12	26	26	18
CCGCCAGCATGCAAGT	ref_3569_reverse	10	3	8	12	7	3	9	11	11	10
TAAGAGGCTTGCTATT	ref_3569_reverse	85	48	110	97	37	92	55	67	47	83
TTCCCACGTGTTAAGG	ref_3569_reverse	166	117	194	184	108	152	127	137	114	134
TTGGGGTTCTCACTAT	ref_3569_reverse	116	73	147	111	79	120	73	105	80	115
TCAGTTGAAGTATTAT	ref_3569_reverse	51	31	70	51	43	57	35	48	36	46
CCCATGTACATAGGAA	ref_3569_reverse	63	60	101	94	60	82	63	86	75	55
ATTTGAGTCTTAGTTT	ref_3569_reverse	17	17	19	16	10	20	17	13	16	15
CTCTAGCACGTAGTCA	ref_3569_reverse	33	24	59	52	40	30	43	52	30	29
ACCTGTTTTTAAAGTC	ref_3569_reverse	42	36	69	48	39	39	23	41	35	52
GGTTATGCGTAGGGCT	ref_3569_reverse	7	9	12	12	6	12	3	2	4	6
TTCATTTATTGCGATT	ref_3569_reverse	66	54	99	74	72	70	72	58	57	51
TCCAATAGGGAGTTTA	ref_3569_reverse	490	309	524	478	376	505	313	436	302	490
TAATACTAACTTGCTC	ref_3569_reverse	31	16	46	31	24	29	17	28	23	27
ACGCAATCGCATGCTA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CGACATATACTTTACT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GAAATGACCTCGCGCT	ref_3569_reverse	29	24	60	32	25	20	21	37	17	32
CGCCCATGCACCTCTT	ref_3569_reverse	2	2	2	3	2	9	3	6	0	0
CTATAGGCTCGTATGG	ref_3569_reverse	47	24	60	37	26	43	34	42	43	43
GAACGTCTGTTCCCGG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CGCCGTGCTCTCAGAA	ref_3569_reverse	383	286	411	369	270	320	292	327	303	296
TTTATCCCACGTTCCT	ref_3569_reverse	217	193	276	280	180	218	191	224	172	230
CGCGTTATCCGGCTTG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TCTATACATATTACTA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGTGCTCATATCA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CTACACGTGGCGAGCC	ref_3569_reverse	25	29	31	31	17	13	12	19	25	24
GTACCGGATTTATTGG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GTTCATGTTCAAGGAC	ref_3569_reverse	41	41	54	67	23	57	26	40	44	52
AGTTATGTTTCGTCCT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTATATCCGGCTA	ref_3569_reverse	34	27	39	42	28	37	29	34	34	45
GGCTTGATCTGCCTAG	ref_3569_reverse	57	36	72	75	52	56	43	67	57	50
GACGACGCCCTCTTCG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TTGTAGGTGAGGCAAA	ref_3569_reverse	15	7	35	16	17	10	12	13	13	12
CGGCGCTATAAGGTTA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTGAGATGTTCTT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GTACGGCTACGCGCTA	ref_3569_reverse	38	18	39	27	39	44	22	33	27	30
ATCGCGATAATGCCCC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CGGCATACTCTCCAAC	ref_3569_reverse	37	27	50	41	21	53	27	36	23	42
GCAAGCGTTGCGCTGG	ref_3569_reverse	20	15	16	19	14	12	16	13	10	15
GCGACTTGTTCTGCTC	ref_3569_reverse	28	19	37	15	24	19	19	21	33	23
GAGAGTAGACGAACTG	ref_3569_reverse	51	38	61	53	34	49	46	59	30	54
TCTTGTAGTCCACGGC	ref_3569_reverse	135	74	155	120	73	123	86	120	89	123
ATACATCGGCGAGAAT	ref_3569_reverse	59	37	72	55	25	53	58	61	42	41
CTACATGTATCGGATA	ref_3569_reverse	14	9	11	11	8	16	13	13	25	12
CTACGGCATGTACAAT	ref_3569_reverse	13	6	18	10	13	7	8	12	10	14
GTCCTCCGTTTCAACC	ref_3569_reverse	56	29	52	44	31	42	34	26	30	41
AGCGGTTGCCTTGCGA	ref_3569_reverse	67	61	83	72	62	84	52	59	67	55
GATATATTACAAGTCT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CGACCTTATTAGTAGG	ref_3569_reverse	36	34	57	33	20	35	16	36	34	37
ATGTATTTAGGAGGGG	ref_3569_reverse	63	50	79	55	29	57	44	72	52	70
TTCTTTTCCTTGGGGC	ref_3569_reverse	58	49	72	62	45	56	50	71	51	49
TCTTCAGTCGGTTTTC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GTGCACCGCCTTTAGC	ref_3569_reverse	29	25	60	33	18	30	37	28	29	36
CATCGTCAAAGCCAAA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGCCAAGCAGCGT	ref_3569_reverse	23	15	22	22	13	17	9	14	9	12
TTTGGTGGCAAGTAAA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCGCCGCGGCGGA	ref_3569_reverse	111	78	154	122	76	124	92	119	85	120
ATACGTTGCTCAGAGA	ref_3569_reverse	45	29	45	71	34	45	41	46	40	38
GTATATTCATGGCAAC	ref_3569_reverse	22	14	26	21	13	22	12	36	14	15
ACCACTGAGTCTAGCA	ref_3569_reverse	25	12	26	25	16	31	23	29	21	20
CCTTTCGTGTACGGTA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCGGGGGGCTGGT	ref_3569_reverse	37	12	41	38	26	31	24	33	33	28
TACATGCATGGTTTTC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGATAGTCGTTGG	ref_3569_reverse	69	62	111	76	52	63	52	73	68	76
TTGTTACCGCGTATAG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
ACTATTATTTTTATAG	ref_3569_reverse	36	25	40	22	25	27	25	32	32	31
ATACGATTCGGCACAT	ref_3569_reverse	82	48	95	69	67	78	59	67	60	83
GATTACGAGCGCGTAC	ref_3569_reverse	93	72	104	86	59	80	68	96	54	60
CACACCCTTACTGGTT	ref_3569_reverse	132	57	118	108	70	102	54	84	81	89
CCGTTAACGTGCCATA	ref_3569_reverse	95	121	108	74	114	77	146	86	135	75
TCTACTAGACCGTCGT	ref_3569_reverse	51	38	80	48	36	48	44	58	39	42
CGCTATTTTGTGTACG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
TAAGGGATTCAATTTC	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCTCACACATTCG	ref_3569_reverse	60	59	115	72	60	74	69	81	61	80
CCTGAAGGCTGATGGC	ref_3569_reverse	18	21	19	12	38	21	24	18	31	21
AGGCAGGACCGGATCT	ref_3569_reverse	107	49	114	101	58	87	76	84	57	83
CATTTAGTCGGGATCT	ref_3569_reverse	39	28	48	38	22	34	43	26	31	28
CGCCTCTTATTGTACA	ref_3569_reverse	48	22	55	41	32	40	31	39	29	44
AGGGCCGCCTGAATGT	ref_3569_reverse	81	53	100	65	47	75	65	63	62	73
TTTAAAGCTCAAGGAA	ref_3569_reverse	31	14	28	19	11	18	11	23	20	16
GGAGGCCCTGCCCTTA	ref_3569_reverse	70	46	89	78	54	67	39	61	54	65
ATGGTCTCTGCTGTTT	ref_3569_reverse	5	9	14	9	6	11	6	9	8	7
GCGGACGGTTCAGGTG	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
AACATTTCTTCTGCCC	ref_3569_reverse	236	133	260	270	185	220	206	253	145	218
ATTCGCAAAGGAGTGG	ref_3569_reverse	71	63	79	87	55	80	68	81	68	76
GAAAGGTCTCATATTT	ref_3569_reverse	55	47	83	73	43	64	52	62	54	71
GAAAGCATATAGATAA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
GGATCGGGCAGCAGAC	ref_3569_reverse	262	158	281	261	163	253	197	201	235	224
CCGGTCTATTTCGCAT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTATTATTAGTCC	ref_3569_reverse	73	46	87	86	52	72	47	68	42	68
CCCCCTACCTTACATG	ref_3569_reverse	19	27	17	18	22	14	23	21	21	14
GTTCGCGTTCCGAATA	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
ACGTCTTAAGTGTACT	ref_3569_reverse	31	35	47	37	17	29	30	35	23	39
TAGTTATAGGTTATTT	ref_3569_reverse	0	0	0	0	0	0	0	0	0	0
CTGACCTTCTTTCTCT	ref_3569_reverse	29	15	30	31	12	29	20	20	14	19
GCATCCCCGTGAGCTT	ref_3569_reverse	15	17	29	14	17	16	10	18	7	14
ACATCCCAAAGGACCG	ref_3569_reverse	55	34	42	52	29	48	48	42	41	28
TCACTCCCTCCCTGAC	ref_3569_reverse	23	58	25	32	65	18	64	22	70	23
TGTCACTGGTGTCCTC	ref_3569_reverse	94	61	99	124	76	86	73	69	88	86
GAAGTACTTATTTCAT	alt_3351_upstream	336	99	401	357	88	299	101	301	125	313
TGTATATTTATTTAGG	alt_3351_upstream	1	3	6	2	8	7	6	3	2	2
CATTTTAGTCGTAAAC	alt_3351_upstream	31	4	21	20	8	16	7	16	4	15
GCGGCCATAGTAAATG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGGTCGGTACCTC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGTCACCTCTTTG	alt_3351_upstream	277	108	306	303	150	250	124	259	132	219
ATGCTGATTCTATGTT	alt_3351_upstream	2	1	2	0	0	2	0	3	3	2
TCGAACCCCCTTATCT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCATTAATTCTTA	alt_3351_upstream	15	6	11	18	4	14	9	15	6	14
CTTTGCAGGACCCTTT	alt_3351_upstream	357	130	420	360	130	354	164	299	144	298
GCTGCACCTTGTATTC	alt_3351_upstream	114	49	140	145	66	105	43	128	70	124
TACTCCGCTAGCTCGT	alt_3351_upstream	99	53	153	101	64	110	48	105	51	80
CAGACTCCTTTCATGG	alt_3351_upstream	456	184	571	485	170	425	217	427	210	409
CATCTTCTGGGTAATA	alt_3351_upstream	136	68	165	148	58	134	71	140	48	111
CAGCAACTGGTTTCCA	alt_3351_upstream	42	14	34	28	11	20	8	30	20	32
AATCTGCGGGTCTGTG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
CTATCGTGGTTTTGTT	alt_3351_upstream	164	63	188	180	81	164	91	168	95	136
GATCTCGCGTTTGCCA	alt_3351_upstream	38	9	39	37	13	34	21	32	15	37
CCCTATCTAAGAGCCC	alt_3351_upstream	193	111	266	248	130	181	122	195	112	160
TCCGTGGAGTCAACCT	alt_3351_upstream	65	36	78	60	44	59	35	77	47	63
TTGAAACAGACGCCGA	alt_3351_upstream	9	1	11	14	4	9	10	10	4	8
CGTCCTCTGTATCTTT	alt_3351_upstream	2	0	2	0	0	0	1	1	0	0
CTCTTACTCCCGGATC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGCTGATAAATTC	alt_3351_upstream	61	31	82	66	32	63	28	64	29	63
GTGGGATGATTGCTAG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
CACCATCTTGCATGTC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
AAATGGTCTGAGTTGC	alt_3351_upstream	29	11	20	16	12	22	9	21	5	27
CGGCAAATTCACTCTT	alt_3351_upstream	52	20	57	64	11	33	21	31	22	33
CCAGGTTGTAATTTCA	alt_3351_upstream	58	71	66	60	79	60	92	74	85	55
AAACTTCAAGTTTCGG	alt_3351_upstream	88	24	108	103	31	92	29	78	40	93
CCGACGCACGCCGCTC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GAGTGAGTCATCTTAA	alt_3351_upstream	103	36	111	112	34	123	28	105	30	96
AAAATTAGTTTGGCCC	alt_3351_upstream	26	5	36	25	7	28	7	31	13	29
AGAACTCCTAACATTT	alt_3351_upstream	105	33	120	99	41	83	46	104	33	98
GGCGCTCAACTCGCTA	alt_3351_upstream	17	4	14	15	6	14	7	13	4	10
GTTAATTGCTCCCACG	alt_3351_upstream	581	202	657	544	237	564	223	506	244	534
AGGACCGAGACCTAGT	alt_3351_upstream	23	12	23	20	5	23	9	23	6	27
CCTACGTGGATTGGTG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GCACTTTGGTTGGTAT	alt_3351_upstream	130	47	137	137	65	103	43	96	63	95
ATCCGTGTATCCTTCT	alt_3351_upstream	63	22	66	93	26	64	21	68	30	79
CACGGGGCGAAGGCTC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GTCTATCAGAGTTTTA	alt_3351_upstream	27	4	24	25	12	19	13	17	8	16
GCCAATGTCTCTACAT	alt_3351_upstream	97	39	101	94	45	81	43	75	49	67
GGGGTTCGTACTCTTT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTGCCTCGCCTGG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TGAATAAGTCGACATA	alt_3351_upstream	164	70	226	207	80	167	78	199	92	145
GTCTAATGACTGTCTA	alt_3351_upstream	58	20	89	57	27	49	22	64	16	44
ACTCATAACGGACGAC	alt_3351_upstream	333	127	362	362	110	308	138	333	122	308
AGGATATCGTAAAAGT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGTTTATTAACTC	alt_3351_upstream	305	168	397	383	180	324	181	336	170	337
TTTCGATGTTCATCTG	alt_3351_upstream	63	34	64	50	36	56	21	54	23	52
CCACGTTCAGTCTCTT	alt_3351_upstream	60	39	72	82	28	62	36	65	44	51
CTTGGTTACTACTCGC	alt_3351_upstream	86	28	109	106	43	94	37	92	46	67
TGAGCTCGATATTACC	alt_3351_upstream	35	16	40	53	17	25	18	39	21	42
CTGAAGGTATTGCGCT	alt_3351_upstream	23	5	29	24	9	17	9	19	8	12
TCCCTCCTACCCACTA	alt_3351_upstream	69	28	86	94	25	76	39	71	31	80
CCGTGGACATCACATA	alt_3351_upstream	82	32	99	109	31	89	30	76	38	67
GATGCGGATCCTCCTT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
AAAGACTGTACGGCTC	alt_3351_upstream	36	20	66	52	18	46	12	53	15	45
GCTTTGATGCCATCCA	alt_3351_upstream	14	3	17	18	7	9	7	8	6	4
GGCACACTACGCGCGC	alt_3351_upstream	8	0	10	13	2	8	2	11	3	12
TATGGTCATGTGGTTG	alt_3351_upstream	70	37	84	71	32	60	37	77	40	65
TCTGCCTATCGACGCC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGGACTTTTCGCT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GTAACTCAGGATCGTT	ref_3351_upstream	507	202	628	535	196	488	202	499	225	470
GGTTGGCCGATAATTT	alt_3351_upstream	20	6	20	23	9	9	9	17	1	12
TCACTGGACCTTTACG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTTTCTTAGATCT	alt_3351_upstream	33	21	47	47	26	43	31	30	26	34
ATTTGGGGCTAATATT	alt_3351_upstream	17	10	33	26	2	25	9	33	5	22
CCTATCTTCCTCCTTT	alt_3351_upstream	17	8	26	17	13	24	6	16	10	16
TCTAGGGTAGCTTCCG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
ACACACGCACACAATG	alt_3351_upstream	58	61	101	93	31	57	33	59	32	76
TTGGTAGCGACGAACG	alt_3351_upstream	9	5	17	10	3	16	5	3	5	16
GCTCAGCCTGCGCTAC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAATTGCAGGCTT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGGAAGTTCATATGCC	alt_3351_upstream	100	48	142	132	42	117	60	111	71	111
CGCGAAATCTCGATGG	alt_3351_upstream	1159	498	1466	1272	470	1171	457	1071	456	1059
CGTGTTAATAGGTGGT	alt_3351_upstream	10	11	19	20	7	20	7	21	7	11
ATGTGTATAATCACAT	alt_3351_upstream	28	10	29	12	10	21	8	32	13	18
AGACATATCTGTGGAT	alt_3351_upstream	235	86	242	231	89	192	122	193	98	193
CTTGGTATCTAGCCCC	alt_3351_upstream	13	3	21	20	7	16	5	19	8	8
CACCTACAGTCGTCTA	alt_3351_upstream	80	56	119	106	32	95	34	99	46	104
ACCTGCCTGGCGGCAG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCTCGTTAATTTT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGGGGATACGCAT	alt_3351_upstream	133	83	174	174	77	118	74	131	58	108
CATTAGTTTTCCTTCC	alt_3351_upstream	10	12	16	11	14	13	17	6	9	16
AGCGTCATCTGGGATG	alt_3351_upstream	15	3	13	14	7	9	6	13	7	10
GACTTCTAAGCATGTT	alt_3351_upstream	44	16	37	41	16	35	3	45	12	32
TTTTGACATTTGAAAT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGTTCCTATTCAC	alt_3351_upstream	6	4	8	9	2	7	3	6	8	4
GGTCCAATTTTCAATA	alt_3351_upstream	66	20	70	60	22	51	29	57	16	51
ATATACACCCGTGCTG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGCTTGTCAACCC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TACTAGTGTGGCAGGA	alt_3351_upstream	72	34	101	70	27	67	36	64	37	59
TTACTAAGCGTTAAAT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
ACAGCTTGGCTATTTG	alt_3351_upstream	10	4	18	13	11	13	9	14	1	12
GAGTGAACGCACAAAC	alt_3351_upstream	41	15	44	34	19	30	9	29	16	31
GATGACTCTCAATTGC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGAACGTATTACG	alt_3351_upstream	85	31	96	73	32	60	32	75	33	59
TCTCACGTATGTTGTG	alt_3351_upstream	149	65	218	217	60	179	64	154	82	158
TCTGAAGTCATATCTT	alt_3351_upstream	68	46	96	73	33	70	26	78	28	55
TCATTACTGGCGACTC	alt_3351_upstream	173	56	205	157	78	121	77	149	65	130
GGATTTTCCATCTTCT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTTAGCTTTTAA	alt_3351_upstream	83	34	87	86	30	74	30	58	42	79
CTCACCCACTCGGGTA	alt_3351_upstream	100	54	123	101	40	107	56	109	67	73
GCTGACGGGACATTAC	alt_3351_upstream	65	36	90	65	18	74	27	90	29	56
CCGTATACCTTGGCGC	alt_3351_upstream	89	43	81	84	37	60	43	77	34	73
GCCACCGCGTTCGCAC	alt_3351_upstream	42	52	64	53	64	35	58	47	81	29
TTCACAAGATCTCTCT	alt_3351_upstream	124	62	131	136	52	113	48	150	60	125
ACCGTATGCTTGCTTG	alt_3351_upstream	66	34	88	70	35	61	32	75	28	60
CCTTTGTGATTTGGGA	alt_3351_upstream	37	26	50	58	18	49	20	41	17	38
AGCTATATCCGTATTC	alt_3351_upstream	1	0	2	1	0	0	0	0	1	1
TTAATCCTCTTATCGC	alt_3351_upstream	45	27	63	43	24	49	23	30	10	48
TGTATTTGGTATACGT	alt_3351_upstream	106	35	101	102	50	84	27	71	37	87
TCTTCGCATTGAGTTT	alt_3351_upstream	33	6	17	19	17	25	9	30	14	25
TTCATCTCTAAATCCT	ref_3351_upstream	49	29	86	80	27	61	27	58	35	51
TATTGGGTGAACAAAC	alt_3351_upstream	146	51	176	166	48	135	56	135	55	117
TTCGTTTTGTCCTGAA	alt_3351_upstream	50	16	54	53	19	52	29	33	14	43
TTACTGTTATTCGAGT	alt_3351_upstream	7	4	12	7	3	10	1	5	4	4
TCTATACTTGCCGTCA	alt_3351_upstream	69	27	90	75	43	61	45	57	23	90
GTATCCTTGTAGGCTA	alt_3351_upstream	91	42	128	108	46	101	39	79	49	93
GTGAGGGGGCCACTTA	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGCCCCTCATACT	alt_3351_upstream	86	22	104	94	27	67	20	54	41	70
GTCGAGTTTCCCTGAT	alt_3351_upstream	28	16	40	30	21	39	20	36	22	21
GGCCTCGGGGATGAGC	alt_3351_upstream	212	91	285	233	105	211	88	219	88	170
TTCCTAGTTTTAGGTC	alt_3351_upstream	84	33	96	92	31	86	46	79	36	85
ACAGGGAGTCCAACGT	alt_3351_upstream	58	20	83	64	28	67	34	63	27	56
CTCCTCCATTGTACAA	alt_3351_upstream	68	39	95	89	34	52	36	55	56	75
TTGATTGTATTTTTGA	alt_3351_upstream	105	42	129	99	44	83	48	81	45	70
GCTGACGTGCCTTGTC	alt_3351_upstream	50	18	37	45	16	41	21	29	19	39
CGACCGATGTTTTGGT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGACTGTATACTT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCCCAACTATTA	alt_3351_upstream	25	7	40	22	6	20	6	26	17	16
GATGGATTGATAGTAT	alt_3351_upstream	71	17	72	57	20	74	33	61	21	67
GTTGAATTGCTTGATC	alt_3351_upstream	73	27	89	60	19	65	29	62	23	64
TTCCTTTGGAGCCACT	alt_3351_upstream	133	56	174	158	55	129	57	150	57	141
TCTCCCGTTACCTTGT	alt_3351_upstream	179	122	214	184	131	168	122	199	142	192
TGACGCATTCTTATTT	alt_3351_upstream	41	13	42	33	14	36	13	37	19	35
TTATTCCGATAAGGGC	alt_3351_upstream	72	25	66	72	20	65	35	67	27	74
AGCCGGTCTCACGTGT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
CTCACCCCGCAACACA	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
CACTACGAGCCAGGAT	alt_3351_upstream	141	74	218	190	75	178	74	179	65	147
CCCGGTGTCCCACCTC	alt_3351_upstream	59	31	80	57	26	51	21	50	23	37
GTTTCTGCTCGTGATT	alt_3351_upstream	37	17	26	24	7	42	12	23	13	17
ATTGCATTATTAGTGG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGTAAACCGAACTCTT	alt_3351_upstream	29	11	38	36	17	29	13	43	21	32
CCTCAACTGGCCCGTC	alt_3351_upstream	171	57	205	148	82	143	69	130	72	146
CTAACAAGGATGATTG	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGTCGACATGGTC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTAGTATGTCTAG	alt_3351_upstream	23	9	30	19	9	15	9	13	10	20
ACGGCGACCTTGGCAG	alt_3351_upstream	629	301	752	717	280	638	299	611	290	593
AATTTCTTAAGACCAT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GATGCGATCGTTTTGT	alt_3351_upstream	21	4	21	22	6	14	8	14	4	14
CGGACACCGACTATCA	alt_3351_upstream	31	12	55	33	11	33	7	34	17	35
GATCGTTTATCTGTTA	alt_3351_upstream	74	33	104	84	34	62	36	68	28	72
TGTAGTTAATACTTAG	alt_3351_upstream	121	45	111	104	52	103	51	137	46	98
CAATCGTTGGATATAC	alt_3351_upstream	11	3	17	16	21	15	10	12	15	16
GTGTGTTTCAGTGAGA	alt_3351_upstream	16	5	15	7	2	10	2	11	4	10
GATCTGAAACTTCCTT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGCCCTGTCCGTG	alt_3351_upstream	56	19	45	58	23	48	23	46	24	50
CTACTTGAGACAGCCC	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGGCTGGTTCGC	alt_3351_upstream	84	25	101	87	16	72	38	71	30	74
TACTTCCTGTCTACTC	alt_3351_upstream	33	11	35	29	21	38	19	34	23	29
TTTCTTTCAAAAAGAT	alt_3351_upstream	168	66	191	148	69	162	94	151	75	154
ATGGACTGGAGGGACC	alt_3351_upstream	20	7	30	32	14	14	11	8	12	14
CAAGTAACGTGTTTGA	alt_3351_upstream	39	5	42	27	5	25	8	19	12	26
TCTTGGTTCACGCTTG	alt_3351_upstream	41	21	54	41	11	46	17	42	15	36
GTGGTTATGGCACTGT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TCGACGCACCATGCTT	alt_3351_upstream	154	124	152	180	106	115	97	130	138	127
AGTTTATTGGCTGTAT	alt_3351_upstream	0	0	0	0	0	0	0	0	0	0
TGATCTGATTGATAAT	alt_3351_upstream	113	45	141	113	48	108	49	101	53	110
GAATCGCTTAAAGCTA	alt_3351_upstream	12	8	23	17	6	20	8	30	7	30
CTAACTGCCTAGCCGA	alt_3351_upstream	124	47	150	141	59	99	51	115	57	104
TTTTATGGCTAAGGTT	alt_3351_upstream	18	5	19	10	10	18	7	15	4	15
TTATCAGTGAATATAC	ref_5419_reverse	4	8	10	9	13	5	7	5	16	3
TCGCACCATTCTCTAT	ref_5419_reverse	5	8	9	7	4	4	14	5	5	2
GGTGATGGACTGCTTG	ref_5419_reverse	13	19	22	19	21	21	31	16	20	17
TCAGGGTTATAATATA	ref_5419_reverse	4	1	3	1	2	3	4	1	2	3
GGAAATGGGTGTGAGT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TACAAGCCGTCTAGGG	ref_5419_reverse	5	5	4	3	12	6	8	6	8	3
GCTACCGGACAGGCAC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CAGCCCCACCTATTGC	ref_5419_reverse	69	142	86	66	135	92	148	77	184	79
GGATTGATATGATTCC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTAAGAGACTAAT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCGCAAACTCGCC	ref_5419_reverse	9	12	20	16	17	11	14	17	20	11
GGCTTAGGCTAAGCTC	ref_5419_reverse	9	15	13	8	10	3	16	12	11	8
AGTGCTCTTGGGGTCC	ref_5419_reverse	9	6	15	10	4	14	6	0	4	5
TCGGAGATAAAAGTAT	ref_5419_reverse	39	67	42	32	59	27	55	27	58	41
TCTTATGCATCAAGGA	ref_5419_reverse	68	89	84	94	113	82	121	83	100	62
TGCATCAGTAGTCCTT	ref_5419_reverse	10	14	16	9	24	13	18	7	15	16
ACTCTGCGATTGTTCC	ref_5419_reverse	25	29	31	28	43	19	31	20	31	20
GCTTCATCCCTTTTAC	ref_5419_reverse	8	9	6	6	10	6	4	3	11	6
CTTGGTTCTAAGGCGG	ref_5419_reverse	48	56	69	29	77	44	70	39	65	39
ATATTTAACTTATGCC	ref_5419_reverse	37	78	58	42	57	44	73	40	106	51
GTATTAGTCCGGTCTT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TGTCGTGGCTCTGTCA	ref_5419_reverse	28	58	42	39	50	29	42	40	53	41
CAAAGTCTATTCGCTA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCTCTCGTATGGA	ref_5419_reverse	29	38	28	30	30	26	40	33	74	18
GGAACACTTCTGCGCA	ref_5419_reverse	24	26	31	22	28	26	28	11	42	34
CTAGTAACCTGTAGGA	ref_5419_reverse	48	89	66	57	88	51	89	46	80	44
GTCGCGTAGCGGGCAA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TGTCAATGTCCAGTAA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGGCTATGTCTAGATA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TCTGATGAACATCAAC	ref_5419_reverse	63	80	89	75	86	71	77	50	89	49
TCCCGATCTTTTTTGA	ref_5419_reverse	11	11	10	14	13	14	17	20	16	13
CCGATCGTCAAATGAG	ref_5419_reverse	19	40	16	16	34	13	26	24	34	18
GCCCTGTGTGCAGTTC	ref_5419_reverse	65	93	94	53	119	72	130	62	121	37
GCTTAGTTCCGACGTG	ref_5419_reverse	3	6	4	3	18	7	15	6	5	5
TTCCCTCTATCCTGCC	ref_5419_reverse	34	41	20	20	44	22	46	33	46	30
ATATAGACTGCTTCGC	ref_5419_reverse	86	127	106	69	112	70	96	79	117	82
GTTTGTTTAGCATTAA	ref_5419_reverse	60	104	83	78	96	83	131	58	109	64
TTACTGCCCCCGATAA	ref_5419_reverse	38	64	48	43	59	35	63	42	59	38
CCGAATTTGTTATGTA	ref_5419_reverse	17	12	13	5	13	7	13	11	12	8
CTGTAAATGCATCCGC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGGTTGGCAGCAG	ref_5419_reverse	21	41	24	27	48	34	42	41	61	26
CTGACATGCAACCGTC	ref_5419_reverse	20	25	22	32	30	16	40	13	21	23
TCTTGCTTTGTTATTC	ref_5419_reverse	75	85	78	63	60	57	82	49	86	64
TTATTCTAGCTTGTAC	ref_5419_reverse	37	66	64	49	41	53	52	33	73	31
ATTACTTAGCTTATCG	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGCCAGCCTGCCA	ref_5419_reverse	25	38	35	16	30	25	43	20	31	17
AACTTTTTTCTCCTGC	ref_5419_reverse	111	139	149	110	162	125	139	144	171	93
ACAACGATTGCCCCAT	ref_5419_reverse	73	116	93	71	124	61	124	69	115	56
ATTGACTCACTTTCCA	ref_5419_reverse	52	55	46	49	66	37	56	44	74	31
AACCCTGCGCATGCTA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTATAACTGGTGT	ref_5419_reverse	15	21	17	17	14	9	16	11	27	9
TTTAAGCATTATATCA	ref_5419_reverse	5	10	8	10	9	9	9	12	10	5
ACCAAGTTAATCAGAC	ref_5419_reverse	62	81	96	74	86	71	69	63	93	64
GTCAGCACCGGTAGTC	ref_5419_reverse	0	0	0	0	0	0	0	0	1	0
GGGCCATTTCCCAGTT	ref_5419_reverse	13	14	8	8	13	10	14	10	19	5
ATCAAGTCAATCACCG	ref_5419_reverse	15	21	27	22	28	21	12	25	31	19
ACTGTTGCGGGACAAT	ref_5419_reverse	83	131	118	74	114	81	143	80	114	67
CCGTGACCGAGCAGCC	ref_5419_reverse	0	0	2	1	0	2	1	1	0	1
ACGGTGGAAATGACAA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTACCACGCTCTCCCG	ref_5419_reverse	5	5	2	2	6	4	3	5	2	4
GTTGGTGGCGTGACTT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TATGCCTTGTCTTCTT	ref_5419_reverse	215	238	302	232	259	201	239	217	230	202
TCTGGATCTCCGAACT	ref_5419_reverse	17	30	15	19	33	19	25	18	31	17
TCTCTGCTTTGCACTT	ref_5419_reverse	21	36	23	17	30	12	27	20	30	12
GGTTGATGCTTAAAGA	ref_5419_reverse	28	41	31	22	37	24	26	13	30	19
GCCTGTAAGCATGAAG	ref_5419_reverse	12	16	16	9	16	11	13	14	12	4
CATTCTTCGTTGGCAG	ref_5419_reverse	14	16	27	24	36	16	24	14	24	17
TGTTGTTATTAGCTTT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
GCACTTATCGGTTGTT	ref_5419_reverse	116	138	127	125	154	109	153	95	149	90
CGATTGGGCACGCCAG	ref_5419_reverse	75	83	97	88	90	66	85	63	73	70
TTTTTCGAATTTTATC	ref_5419_reverse	36	35	43	23	40	34	36	37	37	22
TCGCTTTTATAAAAAC	ref_5419_reverse	39	77	60	62	77	31	90	40	110	47
CCTTATGTACTTAGTG	ref_5419_reverse	28	32	27	41	42	21	50	23	53	20
GTGCCCGTGTCAGATG	ref_5419_reverse	13	17	18	15	18	16	16	12	8	16
GCCTTTATACATCTGG	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGGGTCTTTGCAC	ref_5419_reverse	3	11	13	10	10	5	10	4	9	7
CCTTAGCTTTTGCATT	ref_5419_reverse	4	7	4	1	5	4	4	2	12	1
CACGACACTTGTAATG	ref_5419_reverse	17	24	27	28	36	16	34	22	36	15
GCTGTACAAGTTCAAT	alt_5419_reverse	7	10	7	9	8	3	20	8	12	11
TTGACCTTGGAAGGTT	ref_5419_reverse	1	3	5	6	9	4	2	5	2	1
TGGCGACCCGAGTATC	ref_5419_reverse	9	4	7	3	4	9	5	4	9	4
ATCGCCGGGAACTGGG	ref_5419_reverse	23	31	40	28	41	30	30	39	42	26
TTTCTACTAAAGGTAT	ref_5419_reverse	17	24	27	25	29	19	23	13	25	23
GCGACCGCCCTAACCG	ref_5419_reverse	20	40	35	22	36	16	44	27	44	18
AGGTTCCTAGTAGATT	ref_5419_reverse	8	4	22	7	11	7	17	5	11	9
ATCCTGGCTACCTCGC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTGATCTAGGTAAATG	ref_5419_reverse	44	88	39	48	74	41	86	45	77	33
ACTGGACGCTACTCAG	ref_5419_reverse	4	10	4	3	11	7	14	2	18	4
TCTAATGCATCAAGGA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTGCCAGGTCTGA	ref_5419_reverse	41	41	46	30	53	40	51	35	73	40
CAGTAAACTCGGATCT	ref_5419_reverse	28	24	31	34	37	28	35	34	39	24
ACGGTATTCCTGATTG	ref_5419_reverse	36	57	37	50	52	35	49	34	40	32
ATAGTTGTACTTACGT	ref_5419_reverse	1	19	0	3	15	2	15	4	18	1
TAAAAGGGCCCCTACC	ref_5419_reverse	14	16	19	19	19	13	15	11	16	13
CTGGATTCTGCAAGCC	ref_5419_reverse	62	114	82	67	102	66	124	54	116	58
GTATTGAAACCAAGGC	ref_5419_reverse	145	182	162	115	196	139	169	135	211	108
GCAACAGTCCATAATT	ref_5419_reverse	2	11	5	6	6	8	9	5	5	10
CTTTTCCTCCGGTAGC	ref_5419_reverse	12	17	20	7	14	14	9	6	29	11
CCTTAGTATCTCTACA	ref_5419_reverse	19	32	19	17	19	17	20	17	27	24
AACCATGAGAACAGTG	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TATGCTCGTCGTTCCA	ref_5419_reverse	38	54	54	43	66	25	47	56	59	38
GGTATTTTCGGTCGCG	ref_5419_reverse	8	9	14	4	19	13	23	19	20	13
CGATGTTCCTTGTCTA	ref_5419_reverse	72	87	97	74	92	60	103	71	109	73
ATTATTTCGGACCTGT	ref_5419_reverse	33	52	48	43	90	33	58	30	69	44
GTACGTGTTCACGGCA	ref_5419_reverse	30	22	14	30	34	30	35	20	35	12
GTGCTTGAGCCTTGGA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTACGGCAAGTAG	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCAGAAGTTTCAA	ref_5419_reverse	46	47	42	41	51	41	56	33	64	42
AGAGAGGTTCAGCAGA	ref_5419_reverse	55	53	49	59	59	41	55	38	79	26
ACTTTTATCGTTGAGG	ref_5419_reverse	24	30	16	24	16	15	21	13	28	8
CCATACTTTCCTGCTA	ref_5419_reverse	28	53	39	34	47	32	45	25	33	28
CTACCATCTTATAGGC	ref_5419_reverse	5	9	11	7	9	4	9	4	14	15
GATTTTATTATTATTT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CCCATCCGCGAGGTCG	ref_5419_reverse	74	100	59	50	90	65	97	52	126	52
TTTGGCAGGGGAATAA	ref_5419_reverse	2	1	1	0	4	0	2	5	0	0
TAAACGGACTATTGAT	ref_5419_reverse	21	30	23	23	28	17	29	26	27	24
AGCCGATCTTAATTAC	ref_5419_reverse	27	30	32	21	28	26	35	23	32	19
GATTCTGTATCGAGAA	ref_5419_reverse	27	36	33	36	45	38	49	26	27	34
GGAATTTGCTATGCTC	ref_5419_reverse	29	20	31	17	27	19	34	24	25	13
ACAGAATTCATACTTC	ref_5419_reverse	1	1	1	5	2	0	3	5	6	0
ATCTTCGGTATGCTAT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
GTTAAAGGTCAATCTA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TCTATGCATTGAAAAT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGGTACTAGTTTT	ref_5419_reverse	23	52	40	29	33	24	34	22	56	34
CCCCTATTCTAGTTAA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TAACTTTCGGTCTAGC	ref_5419_reverse	7	11	11	4	13	4	17	6	19	0
CCAGCGGAGAGGTTGT	ref_5419_reverse	136	250	199	170	247	138	260	154	239	131
GAGCCTCCCAGACTGT	ref_5419_reverse	53	97	52	54	96	39	113	54	95	47
CTGGTGTGGGGATTCC	ref_5419_reverse	11	17	20	15	20	18	14	17	19	14
GATGTGAGCTCCTAAT	ref_5419_reverse	5	5	2	1	12	3	8	5	8	12
CATTCGTACCCTCCGG	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TACTAACTGCTTACTC	ref_5419_reverse	0	0	1	1	1	0	0	1	1	0
TTAGCTTCCGGTAATG	ref_5419_reverse	30	40	34	26	42	45	32	28	39	19
CATGTTGTCCCTGTAC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTCGGCTAGTCA	ref_5419_reverse	1	4	1	2	3	2	1	0	1	0
CACTTTATACAACTGT	ref_5419_reverse	4	3	3	5	1	3	5	3	6	2
CGGTCAGAGTTTATGC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
TCCGATCTGGTTACCG	ref_5419_reverse	27	34	34	53	37	37	43	50	55	28
GATTGCGTTTTACATT	ref_5419_reverse	25	39	28	29	32	22	42	24	34	35
TTTTGTGGTCAATTTT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATGACCGGTCGG	ref_5419_reverse	11	21	22	18	21	18	25	9	39	13
TATCGGGCTCAATCAA	ref_5419_reverse	28	23	31	30	46	22	31	22	39	21
ATCATCTGACACCTTT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CTCATGGCTGCAGCAG	ref_5419_reverse	46	88	56	63	83	45	75	51	75	40
TTCGGGTATGTGTGAC	ref_5419_reverse	19	39	34	17	24	37	48	24	48	23
GGATAGCTTCTTTCCT	ref_5419_reverse	16	35	18	30	20	18	25	23	22	13
GGCGGGCTTAGCATAT	ref_5419_reverse	33	36	32	32	43	35	59	37	50	25
CGGTCGCGTCTCGGTC	ref_5419_reverse	33	77	48	32	83	46	64	35	59	39
GTTTACCTACGTGCAC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGGAATTTCTGCGTCA	ref_5419_reverse	21	20	20	31	36	27	31	15	28	17
CCAAGCACACAAGTTT	ref_5419_reverse	10	15	7	10	26	6	21	9	13	4
CACAAAACTCTTCGTA	ref_5419_reverse	370	505	383	360	459	318	482	337	510	306
ATAGTAATTCTCAGGA	ref_5419_reverse	22	38	24	34	35	18	29	30	44	28
TTACTATGCGAATGTT	ref_5419_reverse	17	18	18	14	16	23	21	18	35	18
GTGGTCCACACCTATA	ref_5419_reverse	29	42	25	33	37	36	44	46	49	44
TACCTCTTATATGGGT	ref_5419_reverse	9	27	8	5	17	9	33	5	34	7
CACTAAGTTTCAGGCC	ref_5419_reverse	12	12	21	17	20	8	28	8	27	11
GTGCACCTCTAGGGCG	ref_5419_reverse	68	98	82	73	111	83	103	71	109	81
GCCTCAAACGGGCTCA	ref_5419_reverse	8	12	16	21	17	18	18	13	15	8
AACACACGCGCTATTA	ref_5419_reverse	13	12	19	9	18	9	22	9	27	15
TTTATCTAACTATTTC	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CAATGTCTATTCGCTA	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTCACTACCTTAT	ref_5419_reverse	13	19	22	20	23	22	24	14	19	19
ATCTGGCGCGACGATC	ref_5419_reverse	8	17	12	15	15	10	16	7	23	9
TTCTAAAAATTTCAAG	ref_5419_reverse	14	14	13	12	21	12	21	17	22	22
CCACCGTTTGTGCCTC	ref_5419_reverse	40	35	30	26	44	21	68	20	60	26
CCTTTGCTGCAAGGTC	ref_5419_reverse	33	73	50	36	73	29	88	27	79	24
GACCAGCCGGAGTTGG	ref_5419_reverse	17	19	16	15	24	11	34	18	26	8
CGGTGATCGTTCCATG	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
CCTATTCGCCCCAGGT	ref_5419_reverse	0	0	0	0	0	0	0	0	0	0
GACTTTCTGGGAATGC	ref_588_RC	23	24	43	39	30	36	25	47	34	31
ACAATGTGTTAGCGAA	ref_588_RC	63	49	70	74	53	61	33	55	43	49
TTTCGCATTTGTCTCT	ref_588_RC	140	69	175	149	86	126	82	111	93	143
ACGATGATTGTTAAGT	ref_588_RC	27	42	55	50	31	33	36	46	31	37
AAGCCGTCTCGTCTTG	ref_588_RC	16	13	16	21	11	12	11	21	12	16
GCCGGGTATTCCAGGA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GGCTTCCGCGAACTAC	ref_588_RC	27	27	45	25	19	29	20	20	31	27
CGCACGCCACCACTGC	ref_588_RC	121	84	180	170	89	141	120	137	106	114
CCGGATCGTATCGTGC	ref_588_RC	28	67	33	39	55	36	68	29	65	30
GGCTAATTCTCTAGTG	ref_588_RC	80	57	106	82	62	77	75	74	56	69
AGCGCCGTGATTTGCA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CACCGTATAATGAGGT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TTATAATCGATTTGTC	ref_588_RC	183	84	256	189	102	180	107	200	88	150
TTAAGAGACGATTCCA	ref_588_RC	136	94	174	143	89	117	110	114	117	99
TTGGTCCATTGGCGCC	ref_588_RC	27	37	28	20	35	26	44	20	36	28
CACCCCTATGGGTTTT	ref_588_RC	77	46	107	72	65	76	61	103	66	78
GGGATGGGTTAGGGTC	ref_588_RC	6	6	5	10	1	3	4	12	3	6
TTCTTTTAATTGAGTA	ref_588_RC	5	0	5	4	1	0	2	0	0	7
GTCACAATCGTACACG	ref_588_RC	15	12	11	13	7	7	8	6	8	18
GCAGTGCATGCAACGA	ref_588_RC	0	2	5	13	10	9	3	5	6	7
TTACTCTCCGGGATGT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
ACGTAAATGGTTCCAC	ref_588_RC	7	1	7	13	4	13	4	4	4	5
TAGCGAGGTGATATTC	ref_588_RC	17	10	16	25	7	12	16	20	20	17
TGCTAGTGCCCTGGTT	ref_588_RC	59	33	79	70	51	67	48	56	50	67
TACTTACATGTGGTGT	ref_588_RC	2	4	1	5	6	4	6	5	2	13
GGCCGTTAGTGTGCGC	ref_588_RC	94	116	94	92	127	91	116	90	134	101
GTGCCCGATCTGACTA	ref_588_RC	44	48	42	46	47	36	51	44	32	44
TGTACCGGCCTGAGTT	ref_588_RC	8	11	8	10	11	4	14	7	18	4
GATCCTGTGTGCTATT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CCCGCTGTGGTGGATG	ref_588_RC	125	95	98	105	100	79	88	112	95	77
CTTGTATTTTTCGACA	ref_588_RC	37	25	40	44	30	35	31	44	31	40
TAATATCTATGAAGCG	ref_588_RC	80	64	111	127	63	102	78	92	87	82
CGGCTGTCAGAGGGCA	ref_588_RC	26	16	20	27	13	21	8	14	17	11
CGCATTGAGGCGATCC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GCTGCTAGAGCGATAC	ref_588_RC	49	29	40	50	32	52	26	43	32	45
ACGGTAAACTTTAGCA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CGCACCCTAAGTAACT	ref_588_RC	4	1	2	4	8	2	3	3	2	3
CACGGGCTCCTACCAA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GTCGACTCTTGATAGT	ref_588_RC	54	59	95	84	59	68	58	67	50	70
AATGAGTGCGCGTTGT	ref_588_RC	63	35	73	48	42	46	36	44	21	42
TCTTTACAATTTGTGC	ref_588_RC	293	225	369	332	241	294	243	289	258	273
TATAATCTCCCACACA	ref_588_RC	11	8	23	11	11	20	20	5	8	16
TCTCGGACTTTCACTC	ref_588_RC	22	18	17	20	18	12	14	18	16	17
TGCGCTGACATCTTAT	ref_588_RC	291	225	403	324	247	304	221	299	234	283
AGGGGTACGAAGCTTC	ref_588_RC	108	68	96	84	64	87	66	65	70	74
ATGAAAAAGATTCGGA	ref_588_RC	8	8	16	11	8	17	13	15	5	12
TGTCACAGGATTCCCT	ref_588_RC	29	21	46	31	32	30	22	20	24	25
GTTCGACCTGGGGTAA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GGCCTTGCAATTCTGA	ref_588_RC	32	28	64	32	18	31	27	45	33	38
CTAGCCTAGGATGATT	ref_588_RC	8	12	13	18	4	10	6	7	9	16
GCAATCGCGGAATTCG	ref_588_RC	54	26	65	52	36	35	42	52	40	47
GTGTTATGCACCTTAT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
AGTCGGCCGGCATTCT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TCCTAGGGCATGCACG	ref_588_RC	25	28	37	25	14	27	16	22	24	17
CTGTACATAATCCGTA	ref_588_RC	11	10	11	10	6	12	4	10	7	13
CTGCACGTGCTATCTG	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TTTCGGGAACTTACTG	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GTGTCGCGCTATTACA	ref_588_RC	54	40	48	69	33	27	57	59	42	43
ATCTACATGTATATAT	ref_588_RC	9	3	10	8	7	10	3	5	5	7
AGCCGTACTTTTTTGG	ref_588_RC	62	48	63	82	52	58	51	62	50	69
TATGGTTAGGATTGCC	ref_588_RC	49	48	74	64	34	53	44	44	41	37
CAGAGTAAACATTACG	ref_588_RC	85	46	115	105	59	79	58	81	71	80
TGCTACCTACTCCATT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CAACGAGAAGGTGAAT	ref_588_RC	154	92	209	171	95	121	107	168	116	144
TGTTTCGTGTCCCCAG	ref_588_RC	216	155	275	223	141	214	185	204	183	183
AGCATCTGGTATGGGA	ref_588_RC	45	26	61	47	39	40	28	51	43	36
GTTCACATTGACTTAC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CTCTGGAACGCCCCAT	ref_588_RC	37	23	29	36	17	30	32	35	23	18
TCTTTGACGTAGTGCC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGTCGGTTGTTT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TTCTACAAGGTGTAGT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
ACGCTTTTAGGTGAGA	ref_588_RC	30	22	32	31	22	22	19	27	22	27
GCGTTACCGCCGGCGC	ref_588_RC	10	1	9	2	2	7	2	1	0	6
ACAGCTTCTCATAGAG	ref_588_RC	4	8	5	6	5	6	2	3	4	5
GGGAAAATTCATGATA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
ATTTTATTCTTGTTCC	ref_588_RC	129	44	181	165	65	124	64	164	69	112
CCCAACGAGACGTCCT	ref_588_RC	25	15	21	27	12	18	8	22	10	18
TTTCCATTTTAAGAAC	ref_588_RC	345	206	409	392	225	301	266	287	249	286
CAGTCTTTCGTTATCC	ref_588_RC	37	25	49	34	24	28	24	23	31	18
TCCCATGAGTTCAGGG	ref_588_RC	34	16	12	12	12	19	14	20	12	19
TTCCTTGTTTGACCGC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
ATACGACAATTTGTAT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TTATGATTCAGGGCTG	ref_588_RC	26	17	33	34	25	29	15	17	13	17
GGCTGTTTGTAACCTC	ref_588_RC	234	132	297	248	143	196	177	197	169	201
TATTCGAAACAGTTGC	ref_588_RC	39	30	48	32	22	24	23	34	22	43
TTTTCCTCTAGATTAG	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GTATGTCTATTCTTCA	ref_588_RC	80	46	85	117	35	82	46	74	67	75
GGTCAGTCGTGACCTC	ref_588_RC	19	10	22	19	12	16	13	16	18	11
TTCTTTGGCACATTAG	ref_588_RC	29	19	37	34	27	11	24	15	16	25
TTTAACTGTTCGCTAC	ref_588_RC	29	26	44	22	26	27	25	40	22	27
GGTATGGAATAAACCT	ref_588_RC	20	12	33	39	14	35	18	20	32	23
GTCCGGTGGACTCGCG	ref_588_RC	18	18	22	26	11	17	15	12	20	14
CACCGTCCCCGTGCTT	ref_588_RC	4	3	8	3	8	8	6	4	6	6
CGTCTGACCTATCAGC	ref_588_RC	78	57	111	128	73	125	78	98	74	103
GTCGCCTTGTTTCTCC	ref_588_RC	8	5	17	16	10	18	3	11	6	19
CTGATTCACCGAGGGC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GATAGTTTGGCTTTGA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CTTGATAGGCTTTCCC	ref_588_RC	8	6	17	7	2	13	6	12	11	8
CATTATTCTTATGGTT	ref_588_RC	8	6	19	13	8	17	9	8	9	10
AATCACGGCTCCGGTC	ref_588_RC	57	28	50	56	39	44	23	52	33	43
CCAGTGTTTCCTTTGA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
AATGAGTCCTCGTACG	ref_588_RC	59	31	60	55	43	51	32	48	30	51
GTTCATCATTTTTGGT	ref_588_RC	10	4	9	8	2	9	5	6	4	4
TGCGATCTCTTTACGT	ref_588_RC	47	26	33	36	22	33	26	22	27	31
GAGTCACGTGATTAAC	ref_588_RC	7	2	7	6	3	7	10	8	2	8
TGACCACAGTATCCGC	ref_588_RC	116	56	128	112	74	102	77	109	67	88
GGGTATGTACAAAGGA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GGCGTACCGAACTCAG	ref_588_RC	14	20	30	17	12	12	11	22	19	14
AGGCCTACGCTATAAC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CCAGCCACAACTGGCG	ref_588_RC	2	44	8	6	52	5	43	11	41	6
TATGATGGCAAAGGAG	ref_588_RC	24	17	20	16	19	14	7	19	12	18
GTCTTATCTTCAACTT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TTTATTTTACAGGTTC	ref_588_RC	59	31	64	78	21	64	30	48	29	48
TAATAACAATCGTATG	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TAGGTCTGTAAGCGAG	ref_588_RC	39	23	38	34	24	27	25	31	25	29
AAGTTCTCGCGCATGT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GTTTATTTATCGATAA	ref_588_RC	12	5	14	15	11	15	14	13	5	6
AAATTTTGCAGGGGCC	ref_588_RC	133	75	138	108	84	126	100	119	75	118
AGTCCTTGAAAAAAGT	ref_588_RC	12	3	15	10	3	4	6	3	9	7
TGAAGCTTTTAGTTCG	ref_588_RC	6	5	7	7	7	6	2	7	1	12
CCTTGGAGTGAAGACC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GCCCACGCCTTTTCGC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TTGGTAAAAGGTGGGG	ref_588_RC	24	15	31	21	13	24	19	11	11	18
TTCAGTAACTCTTTTC	ref_588_RC	75	65	91	61	74	54	62	52	61	54
ACTATTTAGCTACTTC	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GGCGCATATTCATCAT	ref_588_RC	66	45	75	70	36	63	50	61	62	53
TATTGGTCGGGTATTG	ref_588_RC	32	22	42	37	25	36	21	37	30	26
CCTTTTAAAGCACAAT	ref_588_RC	30	19	31	31	29	19	30	17	33	17
TATTTCCGTCTATCCA	ref_588_RC	0	0	0	0	0	0	0	0	0	0
CGTAAGTTTCACTCAT	ref_588_RC	192	128	206	159	166	121	145	172	149	168
ACAGGGCACAAACTGA	ref_588_RC	55	50	62	80	40	45	38	35	65	44
TTAGCTTCGGTTCACT	ref_588_RC	166	110	187	158	98	130	114	156	105	146
TCGCCGCCTAATGGGG	ref_588_RC	30	29	35	38	16	26	18	41	25	45
GCTCAGATTCTAGACG	ref_588_RC	0	0	0	0	0	0	0	0	0	0
GTATCTAGTGCTTTCA	ref_588_RC	27	22	28	29	25	26	23	25	27	30
TTTGTCGTTTCGGCTT	ref_588_RC	59	60	87	71	44	68	51	60	56	60
TTATCAGGTAAGTATG	ref_588_RC	0	0	0	0	0	0	0	0	0	0
ATTTTCTCACCCCATG	ref_588_RC	0	0	0	0	0	0	0	0	0	0
ATATTAGTTCACGATT	ref_588_RC	17	9	20	13	15	10	10	4	8	10
CATCACACTTCGCCAA	ref_588_RC	18	10	12	10	11	14	8	9	11	19
GTTTCATGGTTCATTC	ref_588_RC	20	8	23	15	8	16	8	14	6	11
CGCCACCGGCAAGATT	ref_588_RC	0	0	0	0	0	0	0	0	0	0
TTGCGGCGAACGAATA	alt_2558_upstream	11	17	20	14	26	23	13	18	10	9
CATTTCCCTTTTTCTT	alt_2558_upstream	37	17	36	34	21	36	20	17	18	25
ATCTCACCATTTTGAA	alt_2558_upstream	6	4	5	11	3	12	6	9	4	0
AATTTTAGGGCAATAT	alt_2558_upstream	63	51	73	62	47	61	53	48	54	67
TTTTTTAGCCACACTG	alt_2558_upstream	24	51	41	28	24	35	29	42	33	36
CTTCTGGTACTGCGAC	alt_2558_upstream	21	23	34	18	25	15	28	24	18	15
AGTGGGGTTCTTGCTG	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CCACAAAGGATACCGT	alt_2558_upstream	24	19	25	16	11	26	21	22	20	36
GGATTTAAGTCCTGAT	alt_2558_upstream	5	1	3	1	1	6	0	1	0	5
GCTATCATAAAGCTCT	alt_2558_upstream	26	26	36	38	11	29	14	33	18	26
GCCGCCCGTTATCCGT	alt_2558_upstream	78	89	98	97	80	77	73	96	90	83
AATCAGCCAACCCGAG	alt_2558_upstream	16	16	29	25	19	27	25	16	21	23
TAGTAAGAAGCTCAAA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CGATTCCAATATTCTT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCACGATGGGTAA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGATCAATCTGGG	alt_2558_upstream	38	26	41	42	31	42	37	35	29	32
ATTTCTGGGTTAGAGC	alt_2558_upstream	7	1	3	7	2	8	3	4	4	3
GCGTATTGGTACCTGT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAAAACATTCGGA	alt_2558_upstream	35	33	37	39	21	44	26	24	23	43
TCCGTAGACGTTCAAA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGCATACTACGTC	alt_2558_upstream	65	44	69	60	47	53	47	63	66	57
AAAATATACTTAGTAT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
ACACACCACTTGTGCC	alt_2558_upstream	3	10	0	0	14	1	6	1	9	1
AGTTGTTATCACGTAC	alt_2558_upstream	26	12	30	12	22	20	16	33	11	20
GCCTGCATCTTTCTCG	alt_2558_upstream	14	13	24	7	16	20	24	17	14	25
CGGGCGACGTTCGCAA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTGTGAGACACGG	alt_2558_upstream	90	89	108	92	74	78	108	78	91	69
AACTTTTGTCTTCATT	alt_2558_upstream	45	41	65	48	20	51	53	58	36	48
CGTCATGGTCCCCTTA	alt_2558_upstream	5	6	4	3	8	2	3	2	5	4
TCCCTGAGTGTTAATA	alt_2558_upstream	10	17	19	14	14	17	15	11	12	18
TAACCCAGTGAACTCC	alt_2558_upstream	152	103	186	130	128	126	113	137	107	128
CCAAGGCCATAATAAC	alt_2558_upstream	4	3	3	2	0	4	5	5	9	4
GAGTTTGCAATAACTA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
GGGCACCCATGTGTCC	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAACGACAGCCAG	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
ACGGGATCGATCGGGC	ref_2558_upstream	3	4	1	1	5	0	2	1	7	0
GGCCGCTTCAAAGAAT	alt_2558_upstream	9	14	17	14	14	11	13	11	10	11
ATTGTATAGATTGTAA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGCGATCATACGT	alt_2558_upstream	37	41	24	30	45	34	38	26	39	24
CAGCTCCCCGATGGTT	alt_2558_upstream	1	44	6	7	40	1	36	6	55	7
TGCCAGCTGTACTTGT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTCCACAAGCAG	alt_2558_upstream	49	45	71	51	54	60	46	61	56	39
GTAAGGCGCAAGAGTC	alt_2558_upstream	43	32	47	32	35	39	38	35	43	29
AATGTGCTCGGTTATT	alt_2558_upstream	137	118	165	130	110	139	150	118	127	138
TCTCGTTACAGGTTAC	alt_2558_upstream	43	43	45	50	38	40	39	47	36	37
GCGGATGCCCCACACC	alt_2558_upstream	53	45	54	43	30	28	25	34	41	36
TTTAGCAAATCACATT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTAAAATTCAATT	alt_2558_upstream	153	103	172	140	87	146	103	135	125	113
TATGTGGATCAAAGCT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
ACTCAGCTGCTACCGT	alt_2558_upstream	39	34	50	33	31	43	36	43	37	28
TTTCTAATGAAGCTGC	alt_2558_upstream	33	26	36	24	19	35	23	22	29	23
TATTTGTAGTTTAGGG	alt_2558_upstream	33	37	44	29	36	34	32	33	39	46
ACCCCTAAGCCCTACT	alt_2558_upstream	50	52	72	52	56	40	54	47	46	55
GTAAAACATGCGGCCG	alt_2558_upstream	23	12	25	27	19	20	19	31	15	18
TCGTTTACCCTCTGGG	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
AATTATTGAGTCGTTA	alt_2558_upstream	48	38	55	60	47	62	52	47	54	40
TTCGCACTAAAACAGC	alt_2558_upstream	17	9	28	17	12	11	23	16	14	19
GAGTGAAGAATCTGAG	alt_2558_upstream	21	15	25	20	18	27	25	19	26	23
CAACGGCTTAAGCCTC	alt_2558_upstream	22	8	29	31	12	21	13	26	16	22
CCAACGCTTATCCTGA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
TATATTCGTGTTGTGC	alt_2558_upstream	85	85	116	67	78	87	72	86	90	63
TCTCAAGACTGTTCGC	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTGTAGGATTTAT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
GGCGACCCGGCCGTGT	alt_2558_upstream	99	137	146	136	100	108	90	115	110	107
ATGAGCTTGAGAGCCT	alt_2558_upstream	64	51	54	55	34	57	42	43	46	56
GGGCATTCATGTGGCG	alt_2558_upstream	36	21	44	45	37	36	35	32	28	39
GCCAACCGTCGGGCAA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CCTGTTTTTTTCTCCC	alt_2558_upstream	64	41	87	80	43	67	51	67	52	51
CTACGTCTTGCTCTCA	alt_2558_upstream	8	13	14	9	10	9	8	3	13	7
GTTAAGCTCGCGTAAG	alt_2558_upstream	31	22	35	18	32	26	23	25	12	21
TCCAATTGCTTGCTTC	alt_2558_upstream	40	35	53	33	33	43	40	47	19	29
TCATCTATGAGGCGCA	alt_2558_upstream	8	2	6	5	2	3	6	1	10	5
TCGGTTTTAACGTGAT	alt_2558_upstream	38	15	40	29	17	23	27	29	26	32
TAGTTCCGAATGTGTC	alt_2558_upstream	18	28	40	32	19	32	28	30	28	20
CTTGCGTCCATCCTCT	alt_2558_upstream	39	79	51	59	84	32	98	43	75	45
TAACTGTCCAGTGCCA	alt_2558_upstream	51	57	76	68	51	46	61	50	60	50
CCCCGTCTTTGCCTTA	alt_2558_upstream	36	93	55	26	91	21	115	31	106	29
AGGGCCTTTATTTAGG	alt_2558_upstream	32	18	55	37	34	46	29	26	38	31
GGAACGTAGTGCAAAT	alt_2558_upstream	44	68	65	72	56	54	53	59	59	53
ACTCATACCTGCCTTA	alt_2558_upstream	11	38	21	18	58	4	54	15	53	16
AATAACGGCTTCTTGT	alt_2558_upstream	30	30	30	21	15	16	26	24	25	27
TGGGGTGTGATTGCGA	alt_2558_upstream	24	21	26	17	23	18	23	24	18	21
TAGAGCCTTCACGCCA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTCGTCTGCAGCC	alt_2558_upstream	35	36	47	34	34	42	43	32	38	29
ATTAGACATATTCGAA	alt_2558_upstream	198	133	187	166	133	132	143	151	151	147
TGTCACTTCGGTGACT	alt_2558_upstream	3	0	1	0	1	0	0	2	0	3
ATTTCCAGGGCTACTG	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CATAGGCTGTCAAAAT	alt_2558_upstream	16	11	25	24	14	13	33	15	13	14
TACTTAATCCTGAGCA	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCCATTTGTGCCA	alt_2558_upstream	43	26	55	25	33	25	33	30	35	36
GTCCCTTCTGGCCACC	alt_2558_upstream	8	2	17	15	5	11	12	9	6	8
TCTAGTCATTCGCTTA	alt_2558_upstream	11	16	5	13	12	14	11	5	8	9
CCCGTTCAGGACTACC	alt_2558_upstream	63	66	83	71	70	74	63	54	65	64
GTTTAGTAACCACAAT	alt_2558_upstream	16	14	29	31	26	19	17	24	22	13
CACTCGTGACCATCCT	alt_2558_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGTACGCCTATCC	alt_2558_upstream	9	5	6	4	8	13	6	10	6	14
ATAGACTGCAGGGACG	ref_6032_new	119	63	139	97	44	109	50	126	52	119
TTACTTATTTGAGGAC	ref_6032_new	881	399	1087	925	425	834	414	875	420	807
CAGTGATTTCTTGCAG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CCGTATGGTCCTTTCT	ref_6032_new	125	33	141	135	38	104	45	124	51	109
CCAGCAGCATCGTCAT	ref_6032_new	18	47	24	13	21	8	30	13	22	10
TCTGCGTGGTCGGACG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GTTTGACTCTTGTGTC	ref_6032_new	333	144	443	368	146	290	160	347	141	302
TGCCTCCTAAACTTTA	alt_6032_new	226	101	288	276	111	218	120	214	112	231
TAGCCGTTTCGCATCA	ref_6032_new	3	7	5	6	3	7	0	4	2	7
TTGTTCTAGAACAGTT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
ATAAGATTGGTGGTAA	ref_6032_new	42	11	53	40	13	37	7	28	9	40
AATACCCTGCTCTCAC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TTCCGAGCTTTATCTT	ref_6032_new	3	0	3	4	0	2	3	5	4	3
CCATATTCCAATTTAG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GTATTCGGTAATCTGT	ref_6032_new	206	80	224	222	72	215	86	212	81	153
CCAACGTTGGGTGCAT	ref_6032_new	12	13	13	19	11	11	3	19	4	7
GTTGTAGCCAATCGAT	ref_6032_new	88	44	102	87	39	82	34	97	57	84
TTCGTATGAGGCAACG	ref_6032_new	194	79	236	214	90	168	84	209	91	152
TAAACTTCAACGTTCG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
AGGCCTTTTCTTTTAA	ref_6032_new	197	70	242	258	67	233	74	205	96	188
TTATACCACTGCCATT	ref_6032_new	35	6	54	43	9	36	12	34	12	31
ATGGGATTAGTTTTTC	ref_6032_new	83	40	115	96	48	90	39	81	50	74
AGCGGGCGAGCGTTTA	ref_6032_new	73	36	84	90	26	85	27	63	34	66
GGCGCGTATCTGTAGA	ref_6032_new	138	105	180	144	134	104	115	141	109	104
TACGAGCTCCTCCGCT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CAAGAGGTCCCATCCG	ref_6032_new	73	31	77	53	42	53	33	57	26	47
GCCTCATCATAAAGTC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GGTCGGTGGCGGGTGC	ref_6032_new	94	46	114	106	39	78	45	92	36	96
AAGTTTGGCCCGCTTC	ref_6032_new	103	36	112	100	32	95	37	92	46	90
TGACAAGTCGTGATTG	ref_6032_new	97	52	137	134	58	97	46	90	37	87
AATAATATGCGCTGCT	ref_6032_new	54	25	81	77	22	50	26	50	28	50
TGAGGACGAACTACCC	ref_6032_new	91	32	113	133	65	107	48	117	47	111
AGGTACTGACAGCCGA	ref_6032_new	77	61	130	115	41	90	44	93	52	70
AGCCCGCGTTCACCGC	alt_6032_new	462	174	606	496	167	428	219	466	186	413
TCCGTCTGGGTCGCTA	ref_6032_new	130	80	133	160	53	150	75	128	63	111
AGGTACAGCATGTACA	ref_6032_new	75	31	86	100	34	87	42	79	29	79
GGGACTGGCTATTTTC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TCGGGCTCATAGGATT	alt_6032_new	338	145	440	386	177	310	143	330	142	298
TTGTAGTTATCCTGTA	ref_6032_new	93	37	87	104	34	93	25	104	44	86
CTTACGTGCATGGTAT	ref_6032_new	86	42	98	88	41	73	61	84	49	67
TGCGTGGGATTCCGCA	ref_6032_new	371	170	402	371	175	322	193	320	183	268
CGCGCGTACGATCTTA	ref_6032_new	124	60	152	113	44	107	49	111	44	94
AGAACGTTTTATGTGC	ref_6032_new	136	75	174	131	71	139	58	144	58	131
TGGGATGTCGAGGAAC	ref_6032_new	278	105	389	346	130	292	133	298	131	267
ATGCTTGATTTTCTGG	ref_6032_new	34	22	64	49	22	40	25	52	20	36
TAAGATGTCCTACGCG	ref_6032_new	209	77	261	215	95	168	73	192	111	194
CCCACCTAGGGCTCTC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CTGTTCGCTAAAAGGT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GCCAGCAGAACGTCTA	ref_6032_new	16	8	20	19	7	15	10	13	5	14
TATCTAGAATCAATTT	alt_6032_new	16	1	18	20	11	22	8	15	8	10
CCAACCTTGACCTAGC	ref_6032_new	184	123	237	217	115	215	116	250	107	206
ATTACCAGGTGGCATA	ref_6032_new	7	8	6	9	5	5	4	7	5	5
TAGGACGTCTCATCGC	ref_6032_new	124	40	147	145	64	113	48	110	57	103
TAGAGTGTTCATAGTT	ref_6032_new	41	21	69	46	30	56	22	52	32	34
AACAGACTTGATCGCC	ref_6032_new	68	20	63	49	18	45	20	65	37	49
TCGCTTACCATTTTCG	ref_6032_new	130	63	123	127	66	110	44	95	66	99
ATATACTAGGCTACTG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TACTGTCCGGTCAAGG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TGATTGGTTTCCTCTT	ref_6032_new	41	17	37	27	12	31	11	33	11	27
TACGCCGAATACAGGG	ref_6032_new	39	17	59	43	21	45	20	30	23	35
TTTGGCGGCTAGGTTG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CCGACTGACAAGGGGT	ref_6032_new	25	16	39	34	12	30	15	18	13	16
CCGTCGGGCCCAGGCT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GACTTGTGTTACGGAC	ref_6032_new	34	22	49	38	12	32	17	37	20	42
GAATTATTCGCCCTTG	ref_6032_new	70	36	88	78	32	75	51	81	27	65
GGTCTCCGCCCCAAGT	ref_6032_new	209	94	259	197	84	191	97	168	109	196
ACCTGTCCACCGTGAG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GTCAGCTGTCGGGAAT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GATGCACATTTTTAGA	ref_6032_new	275	121	373	311	120	292	105	256	149	243
GTATCGTTCGCACGCA	ref_6032_new	81	45	111	76	33	61	39	81	41	57
TTCGGAATGCTCCACC	ref_6032_new	91	49	111	117	33	85	42	78	44	80
CTTTTCTACGTGGGTT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TTAGGGTAGGCTGTTG	ref_6032_new	1	6	8	8	2	3	3	3	6	4
TATCCAGATTCTATGC	ref_6032_new	134	66	124	122	75	115	51	103	71	73
TGTGCCACCATAAGTC	ref_6032_new	216	118	311	254	109	229	137	191	176	192
GTCATAAGCGCCTCTA	ref_6032_new	41	10	35	41	13	39	17	34	20	29
GACCAACCGTAGTGCC	ref_6032_new	130	72	157	132	67	92	75	132	75	103
GCATCCGTGGGTTGCC	ref_6032_new	64	21	76	50	35	66	28	54	32	63
TTGAGCTTCATCAGTT	ref_6032_new	39	32	52	44	17	42	25	48	22	49
TGGCAGCCTAGCCATC	ref_6032_new	77	36	122	95	32	70	35	90	51	64
AGTCGTGTCTCGGGTT	ref_6032_new	56	41	79	86	34	58	68	75	60	75
AGATAGAAATTGCATG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TCGTCGAAATGGTTCC	ref_6032_new	301	96	371	327	126	272	114	275	129	227
AGAAGCCTAGAAGCTG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CGATCACAGTTATAGC	ref_6032_new	12	2	12	12	3	6	2	9	10	9
ATGTAACCCGAAGAGC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TACGGCATTTAGAACT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CCATCCGTAGTTATTC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TACACCGAAGGCCAGG	ref_6032_new	38	14	39	33	14	35	14	27	19	37
CCGCGTACAGGTGGTC	ref_6032_new	73	34	82	106	40	63	29	69	44	69
TATGCGAGTGTCATCG	ref_6032_new	68	19	76	63	28	57	26	48	19	50
AAGTTATTTGAAGTTG	ref_6032_new	32	8	39	35	17	33	14	55	15	26
AATGCTATTCCGGATC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GTGCTTTCCGTCTACT	ref_6032_new	162	73	206	178	80	172	78	173	87	141
GTTGAGTCGTTTCGTT	ref_6032_new	120	48	135	126	58	127	55	126	68	104
AAGTTAGGCGGGTCTG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
ATTGCCGAGGTCTAGA	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CCGTCCACCTGGTTTG	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CGCAGCTAGGAGACGG	ref_6032_new	72	34	90	89	34	70	37	83	42	74
GGTTTAACCGGGACTC	ref_6032_new	6	6	8	10	4	7	4	8	1	1
AAGATCGCCTCGCAGC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GACAGACTTTTCGCGC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TTCTAATCCTGGAAGC	ref_6032_new	85	41	120	82	51	94	34	73	43	74
TTTTGGGAGTTACTAT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
CTCATTTTAGGGGTCT	ref_6032_new	5	2	18	14	3	13	4	13	5	5
GCGGATATTACCTATA	ref_6032_new	60	25	58	44	32	43	19	44	23	41
GGCCTTGTTATTCTAC	ref_6032_new	107	41	132	105	52	76	35	95	50	79
ACGATGGCTTATTACG	ref_6032_new	56	27	72	55	32	56	21	54	21	63
ATTCCCTATAGCCTCG	ref_6032_new	43	16	43	38	12	41	14	33	10	23
AACTCTTCGCCGGTAA	ref_6032_new	0	0	0	0	0	0	0	0	0	0
AATTTACTTGGGTTGC	ref_6032_new	69	34	83	73	24	66	41	47	32	49
TGGTCTCGCTTTATAC	ref_6032_new	30	7	29	36	15	30	14	25	13	22
TCCTGTTTCACTTGCC	ref_6032_new	15	11	16	25	12	20	10	15	10	7
GTGGGCATTATTTACA	ref_6032_new	0	0	0	0	0	0	0	0	0	0
ATTTCCAGGGCCTGCG	ref_6032_new	28	13	32	35	12	21	5	36	20	34
TTGGTCGCCCATGAGT	ref_6032_new	379	159	526	433	163	341	183	371	191	327
TGTCGTGTCCCTCTCG	ref_6032_new	276	127	339	270	117	278	118	278	141	238
TCTCTGATAAAACGCA	ref_6032_new	29	6	23	28	8	15	10	21	18	29
TATGTTGTTAACTAAC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GATAACTAAAAATTTG	ref_6032_new	322	128	400	361	116	318	147	334	127	237
AGGCCCGTAGACTCAT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
TTATGCTTGGAATGAC	ref_6032_new	79	29	66	83	35	71	28	66	38	71
CTAGCTTGTCTAGAAC	ref_6032_new	0	0	0	0	0	0	0	0	0	0
GCACTGATATAGTGCG	ref_6032_new	113	48	130	105	59	94	43	78	54	74
AAGGTACACGTTACTT	ref_6032_new	0	0	0	0	0	0	0	0	0	0
AGCGGATCGTAAATTC	ref_6032_new	81	48	106	90	46	78	34	73	29	76
TTCCAAGTTCCGTGTA	ref_6032_new	47	26	47	49	21	40	23	36	23	60
GTCGTGCCAATCAAGT	ref_6032_new	49	14	56	56	15	34	13	39	22	44
CGATGCCTTGGTATTC	ref_6032_new	104	45	122	118	38	108	47	100	46	83
CGATCTCCCTCCTATC	alt_4486_reverse	14	20	11	22	21	16	22	13	29	12
TTATTTTTACCCCGGA	alt_4486_reverse	4	19	7	11	25	11	18	11	25	9
ACGAACCTTTGGATCG	alt_4486_reverse	29	46	47	35	44	23	62	23	49	28
CCTACCCTGAACGGAA	alt_4486_reverse	126	152	144	117	155	124	139	112	171	78
TTACTTCACCTAGTGA	alt_4486_reverse	12	26	14	11	19	12	17	17	19	11
GGGGCCTTTTGCCTGA	alt_4486_reverse	66	95	84	55	76	59	91	62	90	55
CGTGTGTGATTCTCAG	alt_4486_reverse	33	60	39	33	50	29	51	24	70	27
TGCTCATTCCAATTTA	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTGTGTACTCCGT	alt_4486_reverse	6	15	6	8	16	14	12	6	13	7
GTCTGCCCATCTCTAG	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
ACATTGAGCATCTTAT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCGTACTCGCTA	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
GTTGATCGCTCAACAC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGTTCCTAGCTTT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTCGGCCGTTGAA	alt_4486_reverse	59	105	83	58	107	45	92	54	122	46
GTTCATCCCCGGTCCT	alt_4486_reverse	0	1	3	1	2	2	5	1	3	1
ATTTTGGAGCCTCTTT	alt_4486_reverse	0	0	2	1	0	0	0	0	0	0
TGTTGAGTTTTCGATG	alt_4486_reverse	5	8	7	3	3	7	6	5	13	4
ACTGTCACAATGCGCT	alt_4486_reverse	8	12	8	3	12	8	15	9	15	5
ATCTGGGTTCGTCATC	alt_4486_reverse	34	49	25	36	49	31	36	24	44	26
CACAGAATCGTGTTAC	alt_4486_reverse	34	45	31	29	52	23	49	19	46	24
CACAAATTGCGAGTCC	ref_4486_reverse	124	132	128	111	152	111	161	106	156	104
CAGAGCGGTTGGTAAG	alt_4486_reverse	8	12	8	7	9	5	10	10	7	6
ATTTATATAGTCTCTC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
TGGACAGGAGTATGCA	alt_4486_reverse	37	54	42	31	47	36	44	32	65	23
CTCATAGCGTCCTAGG	alt_4486_reverse	56	116	75	52	98	52	131	43	110	47
CGGCCCCGAAGTGCTT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGGTCCCAATTAT	alt_4486_reverse	68	62	59	61	55	50	65	44	72	54
GGTGTTTCTAGCCACA	alt_4486_reverse	12	21	11	17	25	15	13	10	20	7
AAAGGCTAATACGTTT	alt_4486_reverse	21	19	16	21	24	27	24	31	27	23
TTTGTGCAGGACTATA	alt_4486_reverse	9	34	16	8	20	23	25	7	20	9
TCGTGCCATGTTTCAG	alt_4486_reverse	8	12	23	19	20	13	27	8	18	18
CCTTCGTAACGGCGTG	alt_4486_reverse	6	29	11	13	23	6	31	9	27	11
CAAGCAGTGCTTAGGC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
TTGAATTTGAATGTTC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGCGGCTACTAAT	alt_4486_reverse	33	78	46	41	53	53	61	34	70	32
GGATGCTGCTCAGTAA	alt_4486_reverse	39	43	37	36	49	34	55	43	58	35
TTACGCAGCTCTTTGC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCTCAGGCAAGTA	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
ATATCGCGTTATCTTC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
CCATCCGCATCTGCTG	alt_4486_reverse	3	9	1	6	2	1	9	3	8	4
GCTCCTTAAGGTCACT	alt_4486_reverse	26	27	44	24	39	18	40	27	38	25
GTTCAACTGACGGTTA	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTTTCCTAGTTAA	alt_4486_reverse	9	6	4	2	6	10	5	3	10	4
TTTCACTTTGGGAAAG	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGAGGGCACCAGT	alt_4486_reverse	10	9	8	6	10	12	13	7	8	9
AGTCTTCCCGCTAATA	alt_4486_reverse	7	7	7	9	20	6	4	4	4	4
CATCTCCCTATTGAAT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTCGATCTTATAG	alt_4486_reverse	12	16	9	9	5	9	12	12	8	4
CTAGTGCTTAGAACAC	alt_4486_reverse	18	35	23	22	40	14	29	16	36	12
AGTGATGCTATTTTCT	alt_4486_reverse	6	5	17	3	4	3	9	3	10	4
TCTGGGTAAGTGCCTT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
GGACACGCAGTTTGGT	alt_4486_reverse	3	7	7	3	2	3	4	4	4	5
CTTCGTTGTAATGGAT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTTCCGTTTTTAT	alt_4486_reverse	1	3	0	0	0	2	1	1	1	0
TCCACTGGTCTTTGTA	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCGGCTGCAATTA	alt_4486_reverse	1	1	1	2	1	1	1	2	5	1
CGTTTCGATATGAGTG	alt_4486_reverse	1	8	4	3	1	5	7	6	7	3
TATGAGGATGGTCCGT	alt_4486_reverse	43	47	33	32	39	33	37	37	50	43
TAGGAACATTTCATAT	alt_4486_reverse	44	59	45	36	71	33	59	33	58	31
ATGGGTTTCTTACACG	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
GTATTTCGTCTTACCC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
ATTATAGGCACCACGT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
GAACCTGGTATATGAT	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
TAATCCGAGAGAATTG	alt_4486_reverse	4	12	12	10	12	5	6	5	15	15
ATCGTCTGATCGCACC	alt_4486_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGGGTATTGCAAA	alt_4486_reverse	2	7	6	6	8	10	4	2	3	5
CGTTTGGATTATGACT	alt_4486_reverse	94	120	102	72	137	81	140	77	122	59
TCGCCTACCCCATTTC	ref_2091_negative	23	63	36	31	44	25	48	29	49	29
GGATTAGATCTGCTAT	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
TGATATTTGAGCTCCT	ref_2091_negative	33	35	45	33	42	37	41	35	32	39
CGTCCCTTCTTCTCGA	ref_2091_negative	41	60	50	49	69	38	84	33	67	30
ACTCCCGTTATCACGG	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
AAAGCTCCAAGAGACC	ref_2091_negative	19	29	21	14	33	23	29	16	28	21
TCCAAGCAACATCGTC	ref_2091_negative	17	14	10	5	19	9	15	9	30	9
CCGTTCTCTAATGCAC	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
GATTGCACGCTTAAAG	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
CTGGGAAACGCAAGGC	ref_2091_negative	58	93	100	83	103	80	93	69	98	63
CCAGTAACCCTCGACG	ref_2091_negative	7	21	4	10	17	6	22	7	26	13
ACCATGTGCTAGTTGT	ref_2091_negative	30	46	39	30	52	32	56	35	53	40
TCAATTACTTGCATTC	ref_2091_negative	37	49	52	42	62	42	63	46	48	33
GATATTCATAGTGTCT	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
TTGCTACCCGAAGTTA	ref_2091_negative	45	75	75	57	92	49	88	47	80	35
TTGTACGCTTCGCGGT	ref_2091_negative	14	33	19	11	25	13	20	11	18	11
CATCCAATGGGTGTGG	ref_2091_negative	12	7	3	4	8	5	15	8	20	12
CCCCCGTTTTCATCTG	ref_2091_negative	1	1	1	4	9	3	12	2	9	1
CTTTAGTAAAATTAGG	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
CTGGTAGTTGCGCAAA	ref_2091_negative	34	37	30	38	41	35	47	31	57	18
TTTTGCCTGATATTCA	ref_2091_negative	21	34	22	19	50	34	46	26	47	19
CTGTGTCTGTAGCGGA	alt_2091_negative	48	31	34	41	37	30	57	21	48	25
CTTTCTTCCATACGTC	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
AAGAATGTTGAAAATG	ref_2091_negative	23	26	27	19	27	25	36	20	27	16
CCAGCCTTGCGTCGTA	ref_2091_negative	2	24	2	1	16	2	19	3	13	5
ACAAACTGTCAATCTT	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
TTTCACTATCAAACCT	ref_2091_negative	28	34	28	41	35	28	47	22	39	23
TAGCCCGGCCTACTCA	ref_2091_negative	51	63	54	54	65	44	76	42	81	35
GGGCTGCTTTAACTTC	ref_2091_negative	46	72	67	54	67	52	69	52	88	43
ATTTTCCGGCGGCAAG	ref_2091_negative	0	0	0	0	0	0	0	0	0	0
TCATGCAGTTGGCCCT	ref_2091_negative	7	24	20	10	13	15	22	13	21	11
AGGTCGGTTCCGGTAC	ref_5712_new	0	0	0	0	0	0	0	0	0	0
CTTAAGAGGGGTCATG	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GGTATCTTGACTTCGC	ref_5712_new	9	18	13	12	9	6	10	8	18	9
GATCGTTAGTTCTTGA	ref_5712_new	55	106	74	66	95	58	105	46	109	62
TTCAGATCTCGTCACG	ref_5712_new	125	178	127	119	200	101	177	127	192	107
TATCTGTACTGCGGCG	ref_5712_new	14	24	21	17	35	23	32	14	43	20
TGCCTGTCTTTCTTGC	alt_5712_new	86	143	114	63	144	68	131	60	127	80
GTTCTGCCAGGATGAT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TTGCATAGCCCATTGT	alt_5712_new	28	89	47	40	84	28	79	42	75	43
TCATTAACACACACAA	ref_5712_new	8	13	9	9	11	6	11	9	15	7
TCTGATAGAGTAAGTG	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TTCATTAATCCTCGAC	ref_5712_new	8	22	11	15	20	14	20	10	23	7
ACGATTCGCTACTTCC	ref_5712_new	3	5	4	2	7	2	8	3	5	5
CTGTGCAGAACCCCTC	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TTTACCTCGTATGCTC	alt_5712_new	54	77	73	61	80	42	98	44	92	53
CCTTTGGTATTCAAAC	ref_5712_new	35	103	53	43	137	42	109	44	115	50
GCTGAACCGTCGCGTC	ref_5712_new	16	11	17	11	21	17	26	13	21	6
CCCTTTGGTGCGCTGC	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GGTGGTAGCTCGACGG	ref_5712_new	26	47	27	15	76	22	54	18	51	26
CAAGCGAACTTCACTG	ref_5712_new	12	24	14	12	12	12	15	4	21	15
GCACTTCATGGGACCT	ref_5712_new	11	6	8	5	8	7	21	10	13	4
TTTGATGGTCTGTTTG	ref_5712_new	101	138	116	79	111	88	131	53	155	90
GGGTTCGTCCACTACC	ref_5712_new	5	23	9	17	11	9	25	13	23	8
CCTCACTATTGGAATT	ref_5712_new	6	25	19	14	18	7	23	10	16	2
CATCAAGCAAGTATCA	ref_5712_new	3	9	9	9	4	5	7	4	9	3
AATTCCACGATTGTGT	ref_5712_new	24	32	24	20	53	11	39	22	45	24
GGGCTTTACTTACGTG	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GCACTCAAGGGTGACT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TCTCACCGCTCTTCTC	ref_5712_new	15	16	11	15	25	13	12	12	18	16
ATACCTATGTGTCACG	ref_5712_new	3	3	1	3	6	1	7	1	7	2
CCACCTACACTCAACG	ref_5712_new	69	160	78	62	183	74	169	62	196	63
TTAGCGGCTCTGTGTC	ref_5712_new	5	9	5	5	11	5	15	6	8	5
AGGCAGGTTCGTCCCT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
AATAATTCGCATATCC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CCGGCGGGCGACTTTT	ref_5712_new	82	127	73	87	120	82	124	77	122	68
TGAGCCCCAGTACTCG	ref_5712_new	6	8	8	2	7	5	10	6	13	6
AAATATTTTTTCACTT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GCAGATAGAATTACTG	ref_5712_new	8	7	17	7	21	10	18	3	15	10
ATACCGAGCGCTCGAA	ref_5712_new	14	20	22	14	32	17	20	9	18	19
TGAACGTTCCGCGAGT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GCTATCCGATCTATAT	ref_5712_new	65	84	68	51	91	64	88	62	100	53
GTCGAATTACCGTTGC	ref_5712_new	22	38	29	18	41	15	25	28	44	12
TCACTCGTATAGTCTT	ref_5712_new	13	43	29	11	40	21	45	23	51	18
CTCCTAGTGTACACAC	ref_5712_new	20	38	18	19	44	16	30	19	32	19
TTCGGAGACCCGCGAT	ref_5712_new	9	14	6	10	14	8	23	9	19	3
CACGGATTTAGGGAAA	ref_5712_new	87	136	97	72	122	69	120	63	152	50
ATGTGGAGGGGATACT	alt_5712_new	11	19	15	15	16	13	26	14	31	13
CCGTTTCACTGAGAGA	ref_5712_new	0	1	0	0	1	1	0	0	2	1
CGCGGATAGCTGTTAC	ref_5712_new	16	27	8	19	33	13	29	9	44	18
CGGTCTTCGTTGAGGC	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GCGTTAATCTATTTTA	ref_5712_new	8	19	18	8	17	7	18	15	24	10
TGCGCCGTGTGTACCC	ref_5712_new	3	12	3	3	12	3	12	5	10	3
TCTCGGTTAGAGCTAA	ref_5712_new	2	2	3	6	10	1	1	1	6	5
GGCGAATGACACCTAA	ref_5712_new	40	77	51	59	75	39	82	50	71	35
TGCGCTTTGTGCTTAC	ref_5712_new	3	10	1	2	2	4	18	5	10	4
CGCCGCGCAACCCCGT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TCTAGAGGGCGTCCTG	ref_5712_new	0	0	0	0	0	0	0	0	0	0
CATTGTCGGATTATTC	ref_5712_new	59	96	62	54	91	48	94	38	95	40
TATGGTATAAGAGATG	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TCTTTTCCTGACTTGG	ref_5712_new	6	13	1	8	12	5	14	6	6	1
AACCATTAGAGATTCA	ref_5712_new	25	46	31	27	45	26	66	27	49	21
GTTCGTCCGCACCTAT	ref_5712_new	6	4	1	2	7	1	6	3	6	7
ATGATATCCTCATCAG	ref_5712_new	0	0	0	0	0	0	0	0	0	0
AAAAGGTGATCAGTAG	ref_5712_new	29	62	43	33	59	31	65	30	85	33
GTGATTCGACTTTTGA	ref_5712_new	1	7	6	5	6	2	0	3	2	3
CAGGGTATGGTTAGCT	ref_5712_new	11	20	17	12	27	13	21	15	29	13
GGCTCATGGCTACTCT	ref_5712_new	22	33	30	21	36	20	44	34	26	21
GTGATAGCTCAATTTT	ref_5712_new	7	15	12	12	14	7	25	10	21	9
CCCGCCATATGGGAGA	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TTTCAGTCTTGCGACC	ref_5712_new	93	143	97	81	155	73	147	59	133	55
GGCCAGTACTTGGCCA	ref_5712_new	38	66	33	17	61	23	57	35	55	26
TCGGTACCATTTTTGT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
AATCACCGGTAGCTTG	ref_5712_new	9	13	3	8	14	6	11	4	10	4
GCTTCAGTGCTTCCAT	ref_5712_new	9	26	7	15	7	8	18	9	17	7
CGATAGGTCGAGGAGT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
CGCCTTGGTATCCTAA	ref_5712_new	83	133	98	96	119	77	140	71	127	53
ACGGCGTCCAATCGGC	ref_5712_new	60	108	55	53	95	49	114	61	121	61
CGGAACCCCCAGCTGT	ref_5712_new	9	16	4	11	18	5	16	6	20	4
CTCCCATATTCCTCCC	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GCGTCTGTGTAGTCAC	ref_5712_new	5	17	10	19	22	7	18	4	25	6
GGACTTCATTCGTGGC	ref_5712_new	0	0	0	0	0	0	0	0	0	0
CTCCCCTATCGCTCGG	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GAGTGTATAATCGTCT	ref_5712_new	18	21	10	15	11	13	22	6	20	9
TTTAGAGCACAGTGAG	ref_5712_new	43	69	49	46	86	48	74	24	97	47
CTGGTCATGATGCGCA	alt_5712_new	9	35	16	16	31	6	34	12	23	14
GAATGTGAGGACGACC	ref_5712_new	14	45	26	14	29	18	45	18	25	15
TGGGCATGTACATGTC	ref_5712_new	21	35	39	24	54	24	61	24	54	25
TATGTATCCGAGCTCG	ref_5712_new	3	9	4	6	15	0	9	2	14	10
TAATTCTGGGTAATCT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
CCTGAGACATAGCATT	ref_5712_new	16	19	16	11	25	16	21	13	30	11
AAGCTCCCGTCCTCCG	ref_5712_new	12	23	16	13	18	10	22	5	25	8
CATTAACACGACGGAA	ref_5712_new	0	0	0	0	0	0	0	0	0	0
CTTTTGATCAAGCGTT	ref_5712_new	13	39	16	15	31	19	16	24	17	15
CCCATGCAGTACCGCC	ref_5712_new	11	19	8	5	25	1	32	7	24	6
GTATACACTTTGAGCC	ref_5712_new	39	53	22	17	50	30	50	24	70	23
AATCTAACTCATGGTT	ref_5712_new	15	41	30	18	44	19	32	25	40	22
CCTTGGCTTTTCTTCC	ref_5712_new	23	27	17	16	16	18	31	12	21	8
CTTTAGTATTCCACAT	ref_5712_new	54	93	83	67	103	65	100	45	131	54
ATTACGGGCCCACATT	ref_5712_new	2	18	11	6	24	6	11	7	16	9
TATTTTCTTCTCTTAC	ref_5712_new	0	0	0	0	0	0	0	0	0	0
TAAATATACCGGTCCA	ref_5712_new	36	71	40	46	65	26	83	40	74	52
ATTCGCAGTATATGAT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
GGTATACATTGAATTA	ref_5712_new	12	14	19	15	26	16	40	7	32	15
CGGCATTTATAGTGTA	ref_5712_new	13	45	22	22	37	16	53	21	58	23
GACTTGTCAGTTGCAA	ref_5712_new	7	27	17	17	27	17	21	16	37	18
TACGTGTCTCTAGGAT	ref_5712_new	7	11	4	5	21	7	26	6	18	8
GGCTTGGTGCGCAATT	ref_5712_new	4	6	8	5	9	2	11	5	9	2
GTTGGAGCCTCTTTAT	ref_5712_new	2	8	3	5	9	5	7	2	15	6
AAGTCTCTGCCAAGAC	ref_5712_new	21	26	17	19	20	10	24	11	42	11
GTCACTGGCGATTCCT	ref_5712_new	47	49	38	43	63	29	63	41	46	31
GCGGACCATAGCCAGC	ref_5712_new	45	76	54	38	83	40	72	52	81	37
GCCCTCCCATTGACTT	ref_5712_new	0	0	0	0	0	0	0	0	0	0
CGGATAGGTCTAAGGG	ref_994_negative	16	55	20	20	38	18	57	20	54	10
CATGCCCCGTACTAGG	ref_994_negative	1	10	5	3	8	2	8	4	11	2
TCTGCCCCCTTTCATT	ref_994_negative	12	9	23	5	31	6	24	11	32	10
GGATATCCATCACTTC	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TCATCTCGTGTTAACA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CTGTAGGTTTACTGTG	ref_994_negative	17	68	43	29	96	28	101	21	79	24
TGCTTGTCTAAGGGTT	ref_994_negative	1	5	5	6	6	3	5	1	11	3
TGTCTCAGGGACGTCC	ref_994_negative	5	35	12	17	21	14	25	12	39	15
AACGTAAGTTATAAAT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
AACTGCTCACCGCTTT	ref_994_negative	3	13	11	4	15	7	6	2	14	0
CGAGTGTAGGCATCGG	ref_994_negative	20	37	23	20	38	12	34	11	45	22
GCCGGTAACTCGTAAT	ref_994_negative	0	5	1	0	0	1	3	1	4	0
GCATACGGGCGCTCAT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GTTGAACATTCAGAGG	ref_994_negative	20	68	41	22	55	24	51	19	49	21
AAATTAGCTCTGGCTT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TGGGTTTATACGTCTG	ref_994_negative	16	21	15	14	38	10	27	22	41	9
TCTCAGTATTATCTAT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TGGTAGCAGTGCTGGA	alt_994_negative	20	40	20	10	40	26	46	20	39	26
CCGTCCGTTGGATACT	ref_994_negative	8	41	13	15	32	13	43	14	48	16
TTTCAAAATCTCGGCC	ref_994_negative	5	13	10	3	8	5	3	3	11	6
ATGCATGTGACGTACG	ref_994_negative	1	4	0	0	4	3	3	0	1	1
AACTCCTAGCAGGGTG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CTAGCGCTGAGTCATT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TGATAGTACCCGTTAG	ref_994_negative	7	13	7	2	10	4	11	5	9	0
TTATGCGTAACTGATT	ref_994_negative	16	28	16	20	14	10	35	11	38	14
ATGCGGATGGACCTGG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TATTGCGTCTAAATTA	ref_994_negative	30	51	33	25	62	23	79	31	55	27
GGCACAAGAGTTCGAA	ref_994_negative	36	93	41	37	106	31	91	33	116	32
TAAGAGGGAGTATATA	ref_994_negative	6	11	7	11	17	11	17	5	16	4
CACAGTGACTTTCTTG	ref_994_negative	6	24	6	5	28	7	28	15	23	8
GCCGTCCTAAGTTCGT	ref_994_negative	8	28	11	9	23	14	24	10	25	8
GGCAGTTAGTAACCCT	ref_994_negative	21	49	21	14	44	8	36	17	32	18
ATATTTCTGTGCGGAG	ref_994_negative	8	22	14	11	19	11	19	6	16	4
ATTCTTTGAAATTATT	ref_994_negative	51	90	52	34	78	39	74	29	63	33
GTGTTGAGCGCCAATT	alt_994_negative	37	99	66	44	111	46	142	34	128	46
AGTCATGATCCGTGGG	ref_994_negative	5	10	3	3	5	2	3	0	8	1
CGGCTGTCCACAGTCA	ref_994_negative	16	36	27	25	23	19	45	16	33	14
TCCCTCTCTTCCTTTC	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GGGACAGTTGCACGCT	ref_994_negative	19	43	17	23	53	15	42	20	50	18
CCGGCTGTCTTCCTAG	ref_994_negative	3	2	1	4	4	0	1	4	10	0
TAACAGGGGACGGCCT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CGACGTGTTTCAATAC	ref_994_negative	10	37	8	8	33	13	40	11	37	19
GGAAATCTGGTGCCTT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TTGATGTACGCCCCTA	ref_994_negative	8	9	5	4	10	1	12	10	7	2
CCTGTCAGAAAATAGT	ref_994_negative	79	244	96	75	197	84	244	74	284	96
TAGGGTTCTGCCAAGC	ref_994_negative	15	24	8	11	31	10	31	8	21	11
CGTTAAGGGTCCTTTT	ref_994_negative	3	12	7	4	9	6	8	4	12	4
AATACGAGTGCAACTT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CTCGTCCGGCCCGGGT	ref_994_negative	18	31	17	15	36	13	36	8	33	12
CTCAGCTGAATTCGAG	ref_994_negative	12	49	20	19	64	13	58	11	68	20
GGGCTTAACGTTCGAA	ref_994_negative	1	1	4	0	2	0	5	0	5	0
ACAATCGCCAGCACCG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
AATCTCAGGATGAACC	ref_994_negative	12	29	15	7	18	7	25	6	28	4
GTGCGGTCATTGGTCG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GATCCTAGAATTTTGA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TGTACCAGGTGCAACT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
AAGATATATTGTCTCT	ref_994_negative	2	4	0	2	1	1	2	3	1	0
TACAGGTGGTGGCGAT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
ATATGTGTTTAGGTTT	ref_994_negative	3	7	5	1	4	1	6	0	3	3
GCCCTAGCTATACTTT	ref_994_negative	64	134	67	61	132	39	174	39	135	67
TATGTAACGAAGGCCC	ref_994_negative	9	16	14	10	20	12	26	8	39	12
AATCGGTTCCCGGGGC	ref_994_negative	2	0	0	0	0	2	4	0	6	0
TACAACTCGACCGGGA	ref_994_negative	16	22	26	11	37	20	25	9	35	10
GCTGTTTTTTTCCCTG	ref_994_negative	35	53	32	25	66	23	56	21	66	20
AATTTGTGCATTCGCT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TTGGTACCTCTTTCCA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CCCAATTTGATGACGG	ref_994_negative	7	33	14	9	33	23	41	11	44	6
TGAGAATACAAGGTGC	ref_994_negative	11	22	4	10	21	8	24	9	19	10
TCACTATGGTCCCTAG	ref_994_negative	9	27	16	7	28	9	24	16	20	9
AGGGGCGCCTGGACCA	ref_994_negative	12	17	6	13	23	10	20	4	29	10
CTACCGAAGTCCACAT	ref_994_negative	8	12	9	9	11	5	26	6	18	6
AGGTCCCTATTCACCT	ref_994_negative	10	50	11	15	28	5	20	13	32	9
TACGCCGAGTTACAAG	ref_994_negative	4	10	6	3	5	1	11	8	3	1
GTGTTTATGTTGACTG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CATAATTATTACCCAT	ref_994_negative	11	55	17	17	35	17	43	18	54	20
ATTTATGGTAGTAGGG	ref_994_negative	16	36	16	12	41	11	41	22	33	8
TCGCTTATCTTCAGAA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GGTTTCACTCTCGTCA	ref_994_negative	7	8	5	6	9	3	7	4	8	2
GATACATGGACTGTAT	ref_994_negative	1	2	2	2	5	0	2	0	5	3
CCTTCAGATCCTACCT	ref_994_negative	16	52	11	18	69	20	52	23	56	11
TTATCGATTGCGCAAT	ref_994_negative	5	20	12	3	16	2	17	7	11	7
CACAGGTGCTTCGCTT	ref_994_negative	20	82	24	18	106	20	91	29	119	26
CATTATATTTCTGCTG	ref_994_negative	15	29	30	19	28	10	30	15	35	14
AAGAGGCCTCAGTCAC	ref_994_negative	5	24	14	8	21	8	25	14	18	5
TCCAAATCCATTGGTA	ref_994_negative	7	8	1	0	7	0	5	5	8	5
CCCAGTGCATCTGTCA	ref_994_negative	1	13	3	1	11	1	4	3	7	2
TTTAGACATAAGCGCA	ref_994_negative	69	149	82	70	159	74	131	61	152	44
GATTTCACTTTGACAA	ref_994_negative	10	14	9	5	9	6	13	10	11	1
CTCGTATTAATGCAAT	ref_994_negative	16	22	13	19	32	10	33	20	18	11
AAGGACTGACCTATTT	alt_994_negative	20	42	21	22	49	18	59	23	63	16
AGACTTGACAGGTGTA	ref_994_negative	22	99	36	33	102	40	128	23	104	24
AATGGTTTATTTCTTG	ref_994_negative	37	72	32	25	62	30	65	23	67	20
CATGTGGTTGCAGGAT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GTATGCTTCGAAGTTT	ref_994_negative	9	16	9	11	19	5	23	10	33	1
AGTGCCAAGGTACGTG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CCTTCAGTTTCACTTC	ref_994_negative	6	27	12	7	8	12	19	9	22	4
AACTCCAGTTAGGATT	ref_994_negative	16	24	24	14	23	7	24	6	35	12
TGAACTTCTGGCTCAG	ref_994_negative	4	7	5	4	8	5	7	3	9	2
AACCGCGATATATTCA	ref_994_negative	26	80	23	18	95	29	83	27	91	21
GGCAGTTTAAGTGAGT	ref_994_negative	1	0	0	0	0	0	0	0	1	0
ATGTTATTGTTGCATG	ref_994_negative	10	17	9	3	11	3	11	4	16	5
TGTACCCACTGCCCGT	ref_994_negative	9	31	9	11	47	12	29	16	34	8
CACGCGATTCACTTAG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TGCAACTTTTTGGACA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CTTAATCTGCCTGGTT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CTGCTGCAGGTTACTA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CCTTCGTCATCGCCGT	ref_994_negative	3	10	7	4	19	1	11	4	13	0
TGCTCGGGCGGAGCAT	ref_994_negative	12	27	8	11	28	8	31	8	27	9
GTTAACGCATGCTTCC	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CAGCGTTATTATAATT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TACCTTCTGCTCCTGA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CTCTACGCTGAGTATC	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GTGTTTCCCTCCCGGT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GTCTAATCAGAACACT	ref_994_negative	2	3	2	0	4	2	4	1	4	2
ATACTTGGCCCTCGGA	ref_994_negative	0	6	2	2	4	2	9	1	6	1
GTTGGAACACACTATT	ref_994_negative	19	56	22	19	34	16	35	10	49	13
TGCTTACCGTACGTCA	ref_994_negative	10	37	2	6	31	6	20	5	14	3
AGGCCTAATTGTGATT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TCCAATGTGATTCCGC	ref_994_negative	2	6	4	4	9	2	6	3	5	1
CTCAGAGGGTAATGTC	ref_994_negative	2	4	1	1	3	1	9	0	4	0
AATTTTCCATGAAATT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CTCACCTAGTTTAAGT	ref_994_negative	12	31	14	16	43	11	32	10	59	9
CACAATCCCTCTGCTT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TCCATGTGTACGTTTG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TTGGCGTCTTCCCATT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TCCACCCTTTGGGATG	ref_994_negative	0	10	3	7	10	3	11	3	7	0
CTTTGATGTCCTTCTC	ref_994_negative	5	7	5	2	12	5	7	2	3	3
TTTCTCACGTGATCTT	ref_994_negative	21	44	16	26	29	22	35	22	44	20
GCGCTCGTCTCGCTTG	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TCGCACGGGATTTTCA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
GTTAGGAGTGCATTTT	ref_994_negative	7	23	14	12	35	14	30	11	47	10
TGATCGATGGAAGCAA	ref_994_negative	57	121	67	61	113	57	93	51	129	48
CCTATCTGTCGTCTAC	ref_994_negative	9	149	16	11	160	16	172	14	172	14
TTTTTATCCGTGTTTA	ref_994_negative	0	3	3	3	8	2	5	0	3	0
TGAAGAGGGTTGTTAT	ref_994_negative	0	0	0	0	0	0	0	0	0	0
TGGTAATGCACAATAA	ref_994_negative	0	5	3	0	8	0	5	2	5	2
CGTTCCCTCTGGAATA	ref_994_negative	16	64	30	19	73	19	64	15	51	19
ATTTACCCCAAATGAT	ref_994_negative	27	53	35	25	62	18	63	17	59	16
TCGAATACGCCCACAT	ref_994_negative	8	16	9	10	9	8	17	6	12	1
CGATTCGCACGTGTTG	ref_994_negative	11	10	7	8	17	4	14	3	23	5
CGAAAAGCTGTGAGTA	ref_994_negative	0	0	0	0	0	0	0	0	0	0
CCTACGTCGGCTTAAA	ref_994_negative	17	62	12	11	64	11	85	21	65	13
TCCCCAACATTGCCGT	ref_994_negative	34	66	41	19	82	40	78	23	69	29
AATCCGGTTTGGGGTA	ref_994_negative	38	87	51	39	90	48	92	35	108	30
ATTTCCTATTTTTTAC	ref_4932_missing	6	11	8	5	5	8	3	4	12	6
TGATACGTATGATTCA	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
CTCGCAGCATCCCCAT	ref_4932_missing	21	31	35	35	39	26	26	33	47	22
AACTTTCGTGAACAGA	ref_4932_missing	60	61	59	53	53	51	58	49	56	38
ACCGCTACTTTGAGCT	ref_4932_missing	51	48	80	48	63	44	59	44	60	50
TAAAGTCCCAAGTATA	alt_4932_missing	144	86	108	103	87	104	112	108	115	88
TGGCCATGCCGTCCGC	ref_4932_missing	102	76	100	106	53	90	77	84	65	66
CCACCCCTGCCCTGCA	ref_4932_missing	36	60	45	34	52	30	51	35	53	32
TTACGATACAACCCTG	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
CGGGCGGTCTCAGATT	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
CCCGTAAGATCACCAT	ref_4932_missing	18	10	20	17	22	25	12	16	9	18
GCCATCACTACGATTG	ref_4932_missing	5	16	9	7	7	3	14	11	6	9
TTAAATGGCATAGAAG	ref_4932_missing	6	8	10	4	10	8	1	5	12	4
TGGATACTCTCCCTGA	ref_4932_missing	33	34	33	32	38	35	40	28	44	36
TGAACCAAGAACTGAC	ref_4932_missing	112	100	94	109	85	111	84	93	93	101
GTGTCCTCACACAACG	ref_4932_missing	27	11	28	18	17	14	23	23	15	12
GTCGGTGCCTGTATAA	ref_4932_missing	162	173	219	172	172	173	157	154	164	160
AACAGCGTTGTAAGTT	ref_4932_missing	54	68	82	64	68	53	67	47	62	51
AGGAAAATATTTTCAT	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
ACGTTTCATATTCTGA	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
GTCATGATCTCCATGT	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
ACGTTTCATATTCCGA	ref_4932_missing	225	196	269	246	224	214	226	215	230	213
TTTGCAGTTCGCCGGA	ref_4932_missing	19	14	23	19	19	17	9	17	16	10
ACCATTACTTAATTGT	ref_4932_missing	26	29	20	19	34	20	22	23	25	25
AGTCGTACAGTACTAT	ref_4932_missing	15	7	20	9	20	23	20	13	15	14
CCTCTGACCTGCCATA	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
TGCACTTACGGTATCC	ref_4932_missing	110	117	173	145	123	140	138	112	165	115
TTTGTTCTCCTCTTCA	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
TGAGGAGGGAGAACTT	ref_4932_missing	15	10	5	11	9	8	6	12	6	13
GCACCGGCTAATCCTT	ref_4932_missing	0	0	0	0	0	0	0	0	0	0
CCCAGTTCCTGTGGGT	ref_4932_missing	40	41	47	35	68	42	55	39	51	48
GTGCTATCCTTCACGG	ref_4932_missing	46	38	68	57	69	68	53	42	45	64
ATCACTAAGGTTTTGC	ref_4932_missing	118	92	140	142	121	127	98	127	102	83
AGGCATGGTCGAAGTG	alt_2537_reverse	268	239	367	301	223	297	265	278	211	262
CGCCTTTAGTGGCCTG	alt_2537_reverse	14	11	9	18	5	14	12	13	14	16
CATTATGGGGGTACCG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAGATACGGGTTT	alt_2537_reverse	0	0	2	0	1	0	0	0	0	1
TTAAGCTTTACCACGT	alt_2537_reverse	17	26	20	17	29	16	28	17	22	13
ACCAGCAATGATGCTA	alt_2537_reverse	28	36	31	29	42	28	27	20	25	17
TCAGGGGCTACCCCGC	alt_2537_reverse	19	7	23	19	11	12	18	15	18	17
TCTCGCTACCTTGAAC	alt_2537_reverse	20	33	29	30	31	19	17	14	30	15
CTGCAACCCGGTTTCA	alt_2537_reverse	14	12	6	13	5	8	11	6	7	7
GTAGTTAGCTGATAAA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAATTACCAACCT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTTCATGTTCGCTCTG	alt_2537_reverse	11	13	20	14	14	21	15	18	16	13
GGGAGACCAGTTGGAT	alt_2537_reverse	45	38	77	43	40	55	38	49	54	55
GCCCGGATGCACGAGT	alt_2537_reverse	7	5	9	9	9	9	7	3	5	4
TTCTTTACGCTGTGTG	alt_2537_reverse	25	38	34	19	17	22	24	29	18	30
TGTAATTTTTTTAGTT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTTACGCGCCCCC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTATATATCACAG	alt_2537_reverse	43	59	69	45	39	61	62	53	51	43
TTACTCGGCACACCAA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTTTACAATAGTC	alt_2537_reverse	87	55	106	85	48	83	55	79	68	79
AAAGAGCCCTTATCAT	alt_2537_reverse	24	29	20	30	12	26	25	27	18	27
CCTTGGTGAATAGGCA	alt_2537_reverse	20	11	27	29	19	25	21	16	18	19
CTGTGTTGAGTTTACA	alt_2537_reverse	41	17	40	36	28	27	30	39	30	30
GGTTGCCGTCTTATCG	alt_2537_reverse	15	20	20	18	21	12	16	22	12	20
ATCACGACGGTGAGAA	alt_2537_reverse	261	180	299	275	168	232	192	236	158	204
AAGCTCTGGCTTTACT	alt_2537_reverse	25	18	20	19	10	23	13	11	9	12
CAAAGGCGAGAATGAG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTGGCGTTTAGTG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CTGGATTTCCACTACC	alt_2537_reverse	24	8	17	12	8	12	11	3	16	13
ATCTAACTGTGTTACT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCAGCCCGTTACC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GAGATCTTGATGAGGC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTACCAAGTCTTC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTTCTGACCCGTC	alt_2537_reverse	0	0	0	0	0	0	0	0	2	0
TGTATCATATGACGTT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTAGAGACTGGG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
ACCACCCATTCGCATT	alt_2537_reverse	25	36	35	44	31	28	32	41	38	36
GCTCCGCATCTTCTTC	alt_2537_reverse	37	21	32	39	25	14	26	19	17	19
TGATGTTGTGTTGTCT	alt_2537_reverse	47	35	62	52	38	43	42	42	42	28
ATTCATTTCTCCGTGA	alt_2537_reverse	429	276	447	434	273	405	309	345	312	361
TAGGTTCCAAAGTATG	alt_2537_reverse	44	36	56	31	40	56	24	36	35	37
TCCTTATTGATTTCGT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTGTTAGTGATCA	alt_2537_reverse	66	44	64	44	46	60	41	58	36	40
TGCCACGTTGACCCTC	alt_2537_reverse	23	33	34	27	26	19	27	37	38	31
TTTCTAGTTAGGTTCT	alt_2537_reverse	21	13	23	13	11	22	20	17	16	15
TGACTGCAGCGGCTGC	alt_2537_reverse	32	16	47	48	19	40	26	22	28	35
CCGGCACCTCCCACCT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGGAATTTTTAGT	alt_2537_reverse	36	18	55	43	31	41	39	29	32	27
CCGTGCCAGGCCTACT	alt_2537_reverse	147	127	216	194	134	160	129	176	142	158
ATCACTGAGATTTTGT	alt_2537_reverse	8	12	16	13	15	15	7	12	11	15
TTTCTTCGATTGGCTG	alt_2537_reverse	37	23	35	27	24	20	22	23	21	26
ACTGCCACGGGATTCG	alt_2537_reverse	35	28	45	33	45	30	36	32	41	43
TGTAATTTTTTTTTAG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GAACGAGCTGGCACGT	alt_2537_reverse	99	70	121	98	76	77	67	85	61	83
AGTTTGTAATAATTCA	alt_2537_reverse	13	18	26	35	18	23	13	25	22	28
CACGCTATTGATCTTG	alt_2537_reverse	94	60	109	84	101	80	82	100	101	98
CAGGGGACCAAAAGGC	alt_2537_reverse	24	21	42	23	22	21	22	30	24	21
CTGAGGGTGTACACGA	alt_2537_reverse	28	19	27	24	8	20	12	25	16	29
GTAGTGAATCCTATGT	alt_2537_reverse	14	12	20	24	14	13	13	11	14	16
TATACCTCTACATATG	alt_2537_reverse	89	53	107	88	66	95	53	56	84	84
GTGTTAGGATAAGGCT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GCGTATTCACATCCGA	alt_2537_reverse	38	24	54	40	22	34	36	42	47	37
TAGGTTGTCGGTGCTA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCCTATTCAAAGT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TGGTACTTCGTGGGCA	alt_2537_reverse	4	1	3	2	0	7	5	2	6	4
GGGGGTGTTGAATGCA	alt_2537_reverse	60	55	67	53	42	58	31	43	46	49
TTCGTCAATCGGCACC	alt_2537_reverse	91	77	105	86	69	88	84	75	59	72
GCCTTCATTGTATATA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TACTATTGGGGGCACG	alt_2537_reverse	63	41	49	45	38	39	46	51	42	49
CTGGCCCTAAGGGCTA	alt_2537_reverse	91	77	117	83	67	89	77	87	59	105
AGAGGGAAGTGCATAT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CACATATATTTTCAGT	alt_2537_reverse	48	39	52	37	22	33	40	46	23	38
TTCTAACATCTCCCCC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTACTTATGAGT	alt_2537_reverse	53	33	60	35	27	41	22	45	38	39
CGTCATTACCCCTTAG	alt_2537_reverse	0	2	0	2	4	0	5	0	1	0
CCTCCCAAGCATGGTT	alt_2537_reverse	186	110	205	201	117	173	153	181	115	168
TCTCGTCAGGTTCTAT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGCTAGACGGTTC	alt_2537_reverse	12	22	33	15	15	21	17	20	22	26
TGTAGCCCGAATTGAA	alt_2537_reverse	211	145	240	208	92	203	154	137	154	194
GTTCACTCTAGGTCTG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
AACACCTCGACAATAG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTCTGTTTGGCGG	alt_2537_reverse	56	75	64	85	67	77	71	66	74	89
GTCCGCGGTTTGCTAT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTCTCAGCACAAA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGTTCGCGTACGA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCTTGTCTAAGGC	alt_2537_reverse	17	13	24	20	13	15	14	19	19	17
GCCCCTGACCCTGAAG	alt_2537_reverse	278	182	329	283	198	222	233	248	175	233
GTCTCCAATTCCTAAT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTCTCCCATATGT	alt_2537_reverse	10	11	17	26	12	12	18	16	17	15
CCCTTCGGTAATAACT	alt_2537_reverse	42	29	35	34	39	29	41	33	38	25
TTTTGGCCAGCCTAAT	alt_2537_reverse	41	21	40	28	19	34	19	25	25	28
ATAGTGGAATGTTTAA	alt_2537_reverse	18	29	33	28	17	22	21	20	23	22
GTTCTTTTCCTGTCGG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TACCTGTACAGCCATG	alt_2537_reverse	19	35	21	24	25	17	29	15	45	20
TAGGCAGTTTACCATA	alt_2537_reverse	32	19	27	23	22	15	26	14	29	30
CGACCGGTCCCGGCTA	alt_2537_reverse	13	11	14	10	2	21	5	14	9	4
ATTGCGTCCTGTCGAA	alt_2537_reverse	18	24	21	11	26	22	21	21	18	17
GACGACGATTAGGTAG	alt_2537_reverse	41	32	37	39	20	33	26	31	30	20
GCGTTTGCACGTCCGG	alt_2537_reverse	32	39	35	36	26	24	35	33	27	31
CGGATACCGTCGCAGC	alt_2537_reverse	24	12	24	22	11	16	13	27	17	28
AGTCGATTCACGTAGG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GATGCTGTGCGGCTGA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTTCTAGGCATTA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
AGTCCCTCGCCTTCCG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCCGCAGAAGTTA	alt_2537_reverse	21	12	29	30	14	24	24	23	17	26
TCGTAAGAACTGTATT	alt_2537_reverse	4	5	7	3	10	5	4	2	5	5
CGGACTTTATCGCGAC	alt_2537_reverse	89	52	106	93	83	81	57	82	74	67
ATCGGTAATTTACATA	alt_2537_reverse	14	13	21	25	11	21	11	15	14	10
CATTTTTATAGCCTAG	alt_2537_reverse	29	23	51	34	16	34	18	33	32	31
CCGAGGCCCCGCTTCC	alt_2537_reverse	46	44	58	49	56	34	41	28	71	49
CTTTCCCGTCACCGCC	alt_2537_reverse	60	37	51	72	32	48	29	57	32	46
GCAAAGCAGCCTGTGT	alt_2537_reverse	41	44	52	37	46	36	23	42	42	29
GCGTCGGCTTTGTAAA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTATTGTAATGTCCGG	alt_2537_reverse	18	12	18	10	6	14	12	9	4	11
AATTTGGCTTGGGTCT	alt_2537_reverse	27	26	42	34	32	31	27	39	16	29
TAGTGAAACTTTAGGC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TGATGATTACCGAGGC	alt_2537_reverse	24	22	52	32	27	33	19	43	18	32
TAATCACACCTGTATA	alt_2537_reverse	45	29	36	41	37	47	39	20	40	42
ATCGAGTAGAACCAGA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TAGACGTGGGACCCTC	alt_2537_reverse	14	19	29	29	13	23	28	22	17	33
TCATCGCCTTTCTTCC	alt_2537_reverse	300	173	363	350	208	301	213	247	192	256
GTTGTAAACCTGCGAG	alt_2537_reverse	14	9	13	23	22	20	11	15	13	10
AGAAGGCCACTCATTA	alt_2537_reverse	37	27	52	48	31	42	40	38	39	36
TCTAGTTTCGTTGTCC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCACGTTACGCTG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TATTCCAGCTACGTAG	alt_2537_reverse	11	7	14	13	12	9	20	9	15	20
GTTGTACGCTTACCTT	alt_2537_reverse	2	6	2	0	3	0	2	1	3	2
CATTCTCATTGATCTT	alt_2537_reverse	88	62	99	85	69	77	52	81	56	75
GGCCTATGGTGTTCCG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTTGCCAAGTCAA	alt_2537_reverse	18	19	29	17	26	23	15	24	27	13
CTTAGGGGTTCGCATG	alt_2537_reverse	73	44	67	80	50	75	50	57	59	56
GGGGGTTAATTATGGT	alt_2537_reverse	6	3	5	10	1	1	4	3	5	5
TAGGTTACGAGCCCCC	alt_2537_reverse	227	144	228	231	113	222	138	188	125	193
AGCTGTCTTAAGATGT	alt_2537_reverse	13	13	9	18	10	11	2	13	12	12
GTGGTGTTAGTTCTTC	alt_2537_reverse	84	62	126	72	60	73	61	78	71	61
ATCACTTGCTAGGCTT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCCCATTAATTGA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCATCAGTCTTGT	alt_2537_reverse	47	36	52	44	49	43	51	54	53	37
CTTTTTGCGGTTTTAA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
AAAATCAGACGTGACA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CATCAGGTTCAGAAAC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCAAGCTTACGTA	alt_2537_reverse	21	12	14	18	22	23	19	18	18	14
AACTTAGGTCCCTGTC	alt_2537_reverse	60	53	86	81	47	78	54	49	56	52
TTTCCCTCCTTGTTTC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
ACTGATCTACTTGCGG	alt_2537_reverse	41	34	45	44	46	44	43	41	29	44
TTAACTAAGGTTAGTG	alt_2537_reverse	4	3	11	6	3	2	6	2	6	3
ATCTTTTCAAAAGGCC	alt_2537_reverse	116	91	166	146	94	108	89	138	80	130
AGGTGAATTGGTATGT	alt_2537_reverse	30	30	43	36	32	40	42	41	29	23
ATCTAACTGGGGTCGG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGATGTTGTATCT	alt_2537_reverse	43	44	49	49	39	58	41	65	41	35
CTTCGTCTTGATAAAG	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCGGGGTTATTAG	alt_2537_reverse	70	53	97	73	68	59	60	70	74	59
TCAACGACCTCACTTT	alt_2537_reverse	6	7	19	16	3	5	5	14	8	16
GCCCTAATCGCCACCA	alt_2537_reverse	41	32	60	46	39	42	30	36	28	35
CATGCCTGAATTTAGC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGATATCTACCTGAAC	alt_2537_reverse	6	9	2	5	5	8	5	6	6	7
CCCCGCTCTTATGGCA	alt_2537_reverse	105	65	122	92	74	102	53	85	77	85
CTCGCGAAGCTTAATA	alt_2537_reverse	36	21	36	25	31	33	28	28	29	25
GATGACGCTCCTATGC	alt_2537_reverse	18	15	26	22	18	30	15	29	25	29
TAAAATTCATGTTTTA	alt_2537_reverse	83	54	97	62	53	61	59	69	58	67
TCCCCAGTGTATTATT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAGTAGAACCAGA	alt_2537_reverse	64	52	76	50	65	51	66	55	74	46
TTTTTCCCATGCATGT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
AGACCTTTACCAAAGG	alt_2537_reverse	72	56	81	66	45	57	46	67	50	73
CCTAGGAACCATTCTC	alt_2537_reverse	96	92	125	105	88	103	112	86	87	69
CCCGTCATGTTACTAT	alt_2537_reverse	0	3	1	0	4	0	1	1	2	1
GAGTTACTTGGAGTCT	alt_2537_reverse	67	39	56	45	53	50	60	50	43	29
TTGTCGGCAATATCCT	alt_2537_reverse	22	18	43	45	23	22	30	38	24	16
GCGCTGCAAATCCAAC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTGTGACGTTAGG	alt_2537_reverse	59	60	84	63	49	70	44	69	64	63
CAACTCTAGATCGTTC	alt_2537_reverse	29	25	37	33	34	24	29	33	26	18
CTTGGTGGTAGGTCTT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
AACGACGCCCCACACA	alt_2537_reverse	48	11	38	21	19	34	20	24	21	28
CGATATCTGACACGCT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCATCGCAACGCT	alt_2537_reverse	148	122	178	197	147	157	122	166	134	167
TCATTCTCGGTATCGA	alt_2537_reverse	64	53	77	61	34	40	57	53	68	64
GTTTATGATGCTCTCT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTTGGCGTATTAC	alt_2537_reverse	4	4	4	3	10	2	4	4	11	5
TGGTAGCTGGGTTCGA	alt_2537_reverse	32	21	35	27	13	39	24	19	20	20
AGCTTTGCCTCAGGGG	alt_2537_reverse	36	21	49	40	22	26	21	41	24	35
CGTTTCCGAATAATTG	alt_2537_reverse	43	28	35	42	29	28	21	19	22	33
TCCAACGGTTTGACCT	alt_2537_reverse	15	5	12	11	9	11	9	11	11	16
ACGGTCGCCCACTGGT	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
GGTATTCTTGAGATAA	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGATCAGCGCTTC	alt_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCAAAGCATGCCTTTG	alt_2537_reverse	357	228	407	347	210	334	272	331	276	311
ACGTCGTACCCATTGG	alt_2537_reverse	55	59	90	63	42	67	62	62	52	76
ATCAATTTCTTTATCG	ref_1841_fdr	100	49	87	91	45	61	53	73	53	82
CATATGTGCCTCCATC	ref_1841_fdr	141	109	153	172	110	121	111	142	110	120
GGGGCATTCCAGGTTC	ref_1841_fdr	51	45	72	69	45	61	58	50	56	43
GGGTAACGCCATCCCG	ref_1841_fdr	21	11	25	29	16	21	12	13	16	17
GTTCCTTCGCAAGAGC	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
CATATCTAGGGTCAGG	ref_1841_fdr	24	19	35	32	18	15	28	30	10	24
TTTTCCTAGTATATTT	ref_1841_fdr	34	15	49	39	19	26	19	25	28	29
ATGTATGAGCCGCTGG	ref_1841_fdr	25	12	40	31	17	24	10	35	17	20
TGGCCATCGTTTATCT	ref_1841_fdr	23	34	20	26	17	27	30	17	30	23
GTGTGAGTTCTCACGA	ref_1841_fdr	27	23	35	33	19	26	24	40	13	35
CATATCAGTCTTATAG	ref_1841_fdr	47	25	29	33	31	28	27	21	26	33
TTCACGTGGCTAAGGA	ref_1841_fdr	59	35	74	66	28	56	48	50	40	61
TCCCGCCCTTGGGTCG	ref_1841_fdr	57	21	62	78	30	69	26	60	30	50
AGTTATGGTTTGGTTA	ref_1841_fdr	65	41	77	68	42	63	59	62	49	50
CTGTTTGCTTCCTTAC	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
TAACCCAGCGCAAGAA	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
ATTACGGAAGCAGCTT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
GTTTACATATGGAATC	ref_1841_fdr	85	53	123	67	56	102	55	115	63	71
TTCGCCTCTCCTATGC	ref_1841_fdr	88	40	98	78	62	73	48	78	66	96
GGGCATACCATTCAAG	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTAAATTCATAGG	ref_1841_fdr	26	23	34	29	22	33	22	28	24	23
TGGCACCAATATTTGC	ref_1841_fdr	49	21	69	56	37	58	37	59	28	46
ACACATCGGTACTCAA	ref_1841_fdr	40	20	59	46	19	42	20	29	22	31
GAGATTACCTTCTTCA	ref_1841_fdr	29	18	38	35	15	36	13	33	13	22
GCGTTCATTGTAAGAG	ref_1841_fdr	92	81	115	121	71	86	76	94	93	96
CCGGGAAGTGATGGTC	ref_1841_fdr	55	33	71	51	46	37	36	74	38	47
AAGCAGGACTACTTAC	ref_1841_fdr	120	83	143	121	120	104	104	91	144	97
AGACTCTCTGCTTTTC	ref_1841_fdr	26	9	35	28	24	23	13	24	10	31
CGTACTAGCGCATCGT	ref_1841_fdr	106	60	139	97	57	108	55	112	57	90
AATCTCTCCGTTCGTT	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
CAAAAATGTAAATTGC	ref_1841_fdr	30	26	32	27	15	29	24	32	26	26
TCCCAGCACTTGCTCT	ref_1841_fdr	43	22	59	61	48	75	35	53	50	37
ATGCGTCCTGTTATTC	ref_1841_fdr	86	53	104	78	47	89	54	85	57	79
ATGTGGTCAGAGGCGC	ref_1841_fdr	152	94	204	192	102	150	110	152	99	157
AAGTGTCGCACATCAC	ref_1841_fdr	0	5	0	0	0	1	0	1	0	0
GGCTGTCACTCTATCC	ref_1841_fdr	51	32	86	73	36	74	41	73	42	43
CCAGTGCGAAGTTAAA	ref_1841_fdr	169	103	186	187	91	142	94	148	105	134
TTGTGGTAATTGCTAT	ref_1841_fdr	96	95	133	99	86	99	72	92	94	76
ATTCCGGCCACATCCA	ref_1841_fdr	62	47	82	67	32	58	26	84	24	61
GGACCTCTAAAAATCG	ref_1841_fdr	55	35	93	56	47	64	42	71	49	57
GCCTGTGGAACCCTGG	ref_1841_fdr	126	91	168	157	79	113	76	120	97	123
CCCTAGCTTGGCAACG	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
TCTATATTTAGCGCTG	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
ACAGAACGTACAGGGA	ref_1841_fdr	90	53	84	75	57	88	54	90	59	71
ACTCAGATGGGGATTA	ref_1841_fdr	42	31	59	50	23	35	35	37	37	39
CCTTGGCTTAGCAGAT	ref_1841_fdr	114	69	131	130	66	98	73	102	64	100
TGAAAGCGTTTTTCTT	ref_1841_fdr	94	46	114	108	48	103	44	87	58	94
TGAGTCTGTTCCGTGG	ref_1841_fdr	22	28	46	35	16	40	24	25	23	33
GCCGCATCACAGATTG	ref_1841_fdr	138	93	214	185	89	130	106	184	99	139
ATTAAACGTTTTCGCA	ref_1841_fdr	218	142	242	219	153	212	136	167	166	175
TCTTACTGTGGGCAAA	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTGGTTATACCGA	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
GCGATTCGCATCTCGC	ref_1841_fdr	28	27	35	34	17	52	18	39	31	20
GAAATTCACCTATTTT	ref_1841_fdr	333	137	386	382	149	328	174	288	139	296
TCTTCCAGAGCATTAA	alt_1841_fdr	51	36	42	56	29	61	43	41	38	46
GACGAGCATCCGGGTG	ref_1841_fdr	177	89	213	168	99	166	99	187	87	151
AGGTGCGTAAAAGAAA	ref_1841_fdr	10	3	7	5	3	1	7	5	2	5
AGCCGGTCTTACTAAC	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
GGACAGGTCTGCCGGC	ref_1841_fdr	5	0	5	4	1	7	3	2	2	7
CAATTTAGCCCATAGG	ref_1841_fdr	144	69	151	118	59	113	48	119	71	99
CTGTGAATGCGCCGGC	ref_1841_fdr	120	92	132	115	72	129	76	103	105	98
GTCCCATGGCTGCAGG	ref_1841_fdr	11	3	17	14	9	16	7	12	6	5
AGCCTCGGGGCTGGTG	ref_1841_fdr	6	9	7	7	7	3	4	3	5	6
TGTAGCATCACGGATT	ref_1841_fdr	57	46	73	91	32	57	41	74	47	79
CCGATTAAGACAATTA	ref_1841_fdr	39	32	66	42	37	31	27	45	36	52
AGCGATAGCTGACATC	ref_1841_fdr	122	71	145	153	105	132	92	125	73	119
GTATTCATCACCGGGT	ref_1841_fdr	55	43	80	67	41	62	41	39	25	68
CTAACCCGTTTCTTCC	ref_1841_fdr	11	15	9	13	4	7	9	8	9	7
AGACACTTGCAGTGCG	ref_1841_fdr	244	167	259	230	151	201	181	203	180	238
CGGTCTTGGTCGACCT	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
GTGCACTAGCATACTA	ref_1841_fdr	107	82	111	124	66	98	80	129	84	97
GGACAGGTCAAGTTGT	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
TTCACTTGTAGGAGCG	ref_1841_fdr	17	12	28	16	10	13	17	11	11	14
ATTCTCTCCGTTCGTT	ref_1841_fdr	10	7	11	18	7	10	15	9	9	8
TCTCAAGGCTCCAGCG	ref_1841_fdr	123	61	155	119	74	98	49	105	53	103
TGTTCAATTATGAGCG	ref_1841_fdr	287	205	345	300	236	263	188	276	236	258
TCGAATGTTATATAGG	ref_1841_fdr	65	39	64	67	35	64	29	44	43	54
GCTAGGATTGCTAGCA	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
TGAAATGGCCGTGGAT	ref_1841_fdr	45	20	66	48	24	44	20	58	25	39
ATCGCGGCTTTCGGCG	ref_1841_fdr	77	58	138	90	50	93	69	88	55	88
CTGGACGGGTCGATTT	ref_1841_fdr	144	82	182	148	79	174	119	118	91	137
GGCCACTTTTTTTGTT	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
GTCCAAGGAGCGAGGG	ref_1841_fdr	266	124	254	250	130	187	144	181	161	181
AGATGGACCTTTGTTT	ref_1841_fdr	45	24	45	32	21	42	26	47	30	37
GTTCCATTGACACGCT	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
ACGACATATTAAACTT	ref_1841_fdr	151	104	182	154	70	124	79	137	91	124
GATCATCTTGCTAGAG	ref_1841_fdr	30	22	50	57	23	40	38	49	30	40
AAAACGCATTCACCTA	ref_1841_fdr	21	16	37	39	20	27	21	26	19	23
CACCACGCATTAATTT	ref_1841_fdr	202	134	264	210	153	186	141	176	158	186
GTGTCTAATGCTCTTT	ref_1841_fdr	16	18	25	16	22	18	10	29	11	33
ATCTCGCTGTTACTTC	ref_1841_fdr	130	54	128	131	40	111	53	107	54	98
ACCAAGGTTCGTTATT	ref_1841_fdr	98	67	128	92	68	110	70	126	87	98
GCAATATCGTTTTCGT	ref_1841_fdr	22	7	20	20	7	11	7	9	8	16
TAATGTGCCTTTCTTG	ref_1841_fdr	15	8	15	12	5	11	10	13	10	19
GTCATGACCTCGGACG	ref_1841_fdr	257	111	270	242	129	202	126	203	118	194
CCGCGTTAGGTTTCAG	ref_1841_fdr	26	9	19	15	16	16	16	19	13	19
CCACTGGGCGGGGCCT	ref_1841_fdr	75	44	79	51	65	83	51	63	55	80
GTATTAGTACCGTTGG	ref_1841_fdr	12	3	9	4	9	6	5	9	11	8
TTTATAAGGGTCACGT	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTGCGGTTTGTGG	ref_1841_fdr	69	51	105	72	38	76	53	79	57	76
CGTTATTTACCGCGCA	ref_1841_fdr	48	41	54	52	26	63	35	52	37	40
TCCCTCGTCTGGTTTC	ref_1841_fdr	8	6	9	6	5	6	9	5	6	8
TTGGGCTGGACTACTT	ref_1841_fdr	32	22	36	32	15	23	12	32	18	22
GGGATAGCGCTTAATA	ref_1841_fdr	40	23	32	51	21	43	25	42	16	38
TGAGCAGCTTTAATCG	ref_1841_fdr	104	64	114	89	68	104	67	97	45	79
GCAGTTGGGCGCAAGT	ref_1841_fdr	138	105	148	106	87	109	93	111	88	113
TACAGAAGGGCTTCTA	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
TGGATATGCGCCACAA	ref_1841_fdr	109	44	132	89	62	101	55	94	54	75
GCGCTACAGGTTCTAC	ref_1841_fdr	1	4	6	7	6	4	8	4	2	7
CATGTATCGTGTCTAG	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
CATTGCTCGGACTTCA	ref_1841_fdr	55	19	64	46	30	45	33	81	34	46
TTAGTCCTTATTTCAT	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
AATCTAGTTTTTCGTG	ref_1841_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGCCAGGTTACCA	alt_1841_fdr	189	139	269	232	169	211	166	186	155	183
TTTCGGTACGTTTGTT	ref_1841_fdr	48	30	60	55	43	51	32	38	25	43
GTTTAGTACTATCTGC	ref_1841_fdr	49	42	42	45	39	33	44	40	40	41
TCAGGCCCTTTCTACA	ref_1841_fdr	88	49	102	85	56	100	76	86	52	60
CTCTCCCGTACTTATG	alt_2534_RC	10	22	11	6	17	8	11	8	16	7
TAACAGACATTTATGT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GAATGTCAGGCCGTAC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GCATCTCAGCTTATAT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CTAGGAGTACGACTTT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CGCTCAAACTTTCGTT	alt_2534_RC	52	50	32	53	56	25	36	51	47	39
TGGTTCTTGCGTTTAC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TCTGTCCAGGCTGCTC	alt_2534_RC	12	28	20	14	33	10	29	8	33	12
AGGCACGCCTTACACT	alt_2534_RC	12	9	12	10	14	10	13	5	8	7
ACGTGAAAATATCTTG	alt_2534_RC	79	88	102	77	79	93	82	64	89	65
ACTTGGATGAGGTTTC	alt_2534_RC	27	39	33	30	44	27	35	23	28	16
TACTTACGGAGCGCGC	alt_2534_RC	4	4	2	5	9	3	3	1	2	2
TATTTGGCGAAGCTGG	alt_2534_RC	4	3	5	4	1	3	5	2	7	1
TTTCCGCACTTGAGCC	alt_2534_RC	46	52	73	42	80	70	66	54	58	41
TGAAATATTCCTCAGT	alt_2534_RC	35	25	47	27	44	28	24	41	51	14
CGGAATCTTGCTTGCT	alt_2534_RC	19	19	29	18	19	20	20	16	20	11
ACTCATAGCTGCTGAG	alt_2534_RC	21	22	21	20	27	6	28	16	31	12
CTGGTGTCTCGCCCGA	alt_2534_RC	118	117	157	102	152	109	143	125	134	100
GGCGACGGGTGGATGT	alt_2534_RC	5	13	10	5	20	4	11	4	19	11
TGGAGGTCACCAATTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AAGCTGCGAACTGTTA	alt_2534_RC	173	226	243	177	232	187	241	182	246	175
GGATTTGTGTGATATG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GCTACCGGCTAGGTCG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GATTCTTGTTGTCAGG	alt_2534_RC	45	56	48	54	45	26	56	26	58	35
CTATCTTCTTCTCTCG	alt_2534_RC	5	7	11	5	11	3	10	2	4	3
TCCGGTTGCTTGATGC	alt_2534_RC	16	40	19	20	60	21	43	21	78	9
GACAGTTATGTGTACA	alt_2534_RC	2	3	5	4	2	6	4	4	1	3
GCCAGCGAGAAGTGTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CCACACCAGTTCTTGA	alt_2534_RC	89	139	101	87	149	77	134	70	128	51
TCTTGATAGATGTTCG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TTCATTTTTCCGGGTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCAGGCTCTGAT	alt_2534_RC	14	16	21	25	17	22	13	13	25	21
CTTTCGTGCTAGGCTT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AACGTGCCAGACCTGT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCTGATTAGAAA	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CTGGTGATAGAGACTT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GAATTTAGCGACGCCC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GTATCACGCTACTCTT	alt_2534_RC	12	8	10	11	19	17	13	2	16	16
GTGGCCAGCGTCCATT	alt_2534_RC	0	5	0	5	4	0	2	1	1	0
GTTGTTGGTGAGGTAC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TGATATTCAAATATCG	alt_2534_RC	66	116	79	57	80	67	100	45	110	59
TTGCAGAAATGACCAC	alt_2534_RC	169	228	219	182	204	177	257	145	252	153
CAGCGTAGCATGGGTT	alt_2534_RC	23	36	24	29	25	13	27	22	20	28
CTTACCTGTGGATATG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CCTAGGGTGCTCTGCC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GTTTCCAAGTGTTTCT	alt_2534_RC	3	0	5	1	2	2	1	1	1	1
GTGACCTGGTAGATTA	alt_2534_RC	12	6	7	10	6	5	9	8	7	2
ATATCGAATAATATTA	alt_2534_RC	26	29	35	23	25	39	26	22	32	21
GATTCGCCAGTTTTCA	alt_2534_RC	2	3	2	9	1	2	5	1	4	1
AAAGCGCTCTGTTGTC	alt_2534_RC	6	5	7	9	9	3	7	2	5	5
TTTCGCCTCCTCTCGG	alt_2534_RC	55	55	53	53	57	43	67	31	51	35
ATACCTTCCAGTGATT	alt_2534_RC	240	309	330	250	339	255	384	233	369	222
ACCATAGGTCCTTATA	alt_2534_RC	32	53	38	35	54	29	55	29	45	31
GGTCCATGGAGCTATT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CGGACCACTGCGAGGT	alt_2534_RC	48	67	67	52	64	51	56	61	64	35
ATCATTAATGGGCTGC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ATGAACATGAATTCCT	alt_2534_RC	6	3	3	8	8	8	8	12	4	10
CTTCATTCTGCATATT	alt_2534_RC	11	33	19	20	14	29	18	24	15	10
CTTGTCTTAATCGGAG	alt_2534_RC	9	16	12	8	11	3	11	13	10	10
GTCCAACCTCATCCGT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ATCCATGTCGATCCCC	alt_2534_RC	50	43	48	58	52	44	52	41	50	47
AAACTGGACCAGCTTT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CTTAACTCCGCTCAGG	alt_2534_RC	0	0	0	0	0	1	0	0	0	0
TGGCGGGGGTTTGGGC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TAAAGGCCTGACAGCT	alt_2534_RC	34	57	44	40	60	36	57	57	60	46
CCTCCTTAGTCAAATG	alt_2534_RC	35	71	32	36	54	25	59	33	71	31
AACATTTATCCAAGGC	alt_2534_RC	20	25	25	26	31	22	37	28	21	29
ACTACGGGCCGTTTAG	alt_2534_RC	13	20	17	9	23	14	19	11	14	14
GTTTGCCCTATGCGTG	alt_2534_RC	48	49	66	40	62	36	65	40	66	39
GGTCTTTACTTGCTTC	alt_2534_RC	33	72	17	23	46	21	79	15	55	19
TAAATGTACTTGACCG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GTTAATGGCTCCCTCT	alt_2534_RC	5	8	6	6	6	4	7	4	0	7
TCACCACTCACGCTAC	alt_2534_RC	9	28	23	19	21	12	28	10	36	19
CGGGCCCAATGCTGAG	alt_2534_RC	13	15	19	7	20	6	18	12	16	7
ATGATGCCAGGCCCAC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CTTATCGTTTATTAAG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TCACTTGTTCAGCTGG	alt_2534_RC	39	52	62	44	55	33	64	59	64	51
CGCGGCATCGTCTGTT	alt_2534_RC	13	27	11	14	12	8	27	14	22	11
TGGGTGTCATTTCCTT	alt_2534_RC	49	59	57	37	52	40	50	49	64	30
GCGATTATCCAACGCA	alt_2534_RC	37	71	47	60	67	33	77	35	66	47
AGACCTGACTGCTGGG	alt_2534_RC	54	77	55	59	65	50	51	51	70	53
TTCGCTGCGACTCTAC	alt_2534_RC	6	9	6	3	6	5	9	2	12	8
GGAACCTTGGATCACC	alt_2534_RC	26	26	31	27	27	14	25	26	24	21
CGTTTAATGTTGGAAT	alt_2534_RC	51	76	57	62	73	46	82	46	87	47
ATCTATCTCCTTTTTG	alt_2534_RC	5	19	14	9	26	17	31	8	18	7
ATACCTATAGCAAGTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AAACTCATTGAGCATC	alt_2534_RC	29	26	39	29	47	25	48	20	42	32
ATGTATGGCAGTTGTT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTGCTTCTGCCT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTCGGAATTACT	alt_2534_RC	73	85	84	79	79	82	84	76	81	51
CTTGGTTATCTCCCGG	alt_2534_RC	13	23	15	8	16	13	21	14	24	21
AACGCTTTTGCGACTC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TAAGGAAGATCTCGGG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GTTTTGCTCCCTAAGT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GGTCAGGTTGCTCAGA	alt_2534_RC	2	0	1	6	4	2	0	1	2	5
TGCCCGGCACGGCTAT	alt_2534_RC	5	5	4	5	5	5	7	5	10	1
CCCGCAGGTACAATTC	alt_2534_RC	13	29	11	11	25	5	21	7	27	13
GGGACGTGTAATTATA	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CCTTTTCTTGAGGCTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TTGTCAACGCATGCTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ATCTATCTACTTTGAG	alt_2534_RC	8	19	5	8	3	7	9	7	10	8
CAAACAGATCCATCGT	alt_2534_RC	58	70	65	51	49	43	56	41	59	42
CACTCTGGGGCATGAC	alt_2534_RC	6	13	13	11	12	18	15	14	14	9
ATCTGAATTATGGGGA	alt_2534_RC	24	28	33	24	32	27	24	25	28	26
TGAACTTGTAAATCTT	alt_2534_RC	60	50	51	36	46	48	47	58	51	32
TTATATAATTTCCATA	alt_2534_RC	43	37	37	31	46	23	35	34	42	30
AACTACATTGCCCGTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GTGCTAGCGGAGATTT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AAATGGTTAGGTTCTC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ACTGGCTTAACGAAAT	alt_2534_RC	25	17	23	23	20	17	14	14	16	16
TCGTCCCTATATTGTT	alt_2534_RC	57	78	65	64	79	50	130	62	92	68
CCCTTCATATCCCGTA	alt_2534_RC	11	9	13	9	11	7	10	7	14	6
CAATAATTGTAAGATT	alt_2534_RC	21	31	26	22	22	19	27	18	32	25
GTAACTATCTATAGCG	alt_2534_RC	16	29	21	20	26	21	40	31	45	13
GGACTCAGATTAGAGG	alt_2534_RC	16	20	26	23	28	20	24	23	34	14
GCTAAGGCAATCTTAT	alt_2534_RC	24	28	28	31	24	30	39	21	40	24
TCCTCATGTTATGTGT	alt_2534_RC	21	24	30	35	22	24	35	26	29	24
TGACGATATAGTTTTC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GTTCACTGATATGGCT	alt_2534_RC	0	5	3	6	1	4	4	2	3	4
GTTTTGACTGACAACG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GCGCCGTACCGATCTG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GATTTTACTGAACAAG	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AGTTGATGAATTGGGT	alt_2534_RC	16	9	21	16	13	7	22	10	12	16
CGGCACGATCCTCTAC	alt_2534_RC	8	14	11	5	11	14	7	11	4	4
ACAATTTGGACATCTT	alt_2534_RC	4	0	4	1	1	2	1	1	2	6
GTACGTGTACCAGAAG	alt_2534_RC	1	1	0	2	0	0	5	0	2	0
CATTCGCGCCCTCATC	alt_2534_RC	9	21	10	8	18	14	22	16	14	8
GCTCGGTTAAGCTTCA	alt_2534_RC	7	14	9	15	23	13	17	14	15	17
CAGTGTTTAATTCAGC	alt_2534_RC	1	6	0	1	2	3	2	3	1	0
GAGCTGGGTAACCTGC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ACTGCTAATACAGGCT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AATTACGGTCTATTTT	alt_2534_RC	12	4	7	9	4	12	13	7	12	10
CCTTGCGTGTATCCCC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GCTCAAGTAATCCACT	alt_2534_RC	17	30	21	15	32	20	21	32	20	16
TATTTTCGCGGTCATC	alt_2534_RC	47	32	60	45	42	30	37	35	37	43
CGTTTGATATATCGCG	alt_2534_RC	64	74	85	74	76	43	71	59	72	64
CCGTCACAGCAGTTAG	alt_2534_RC	7	25	27	26	30	13	16	14	23	25
GCGCAGTGTAGGTCAG	alt_2534_RC	47	52	60	47	41	42	53	35	45	39
TCGGGCCATGTCCCGC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GCCCGGTTTCCTTGCT	alt_2534_RC	11	17	10	15	25	9	15	6	25	13
GCTGGAATTTAGCGCA	alt_2534_RC	8	9	6	8	20	4	10	10	7	5
ACACCTAACTCCGTCA	alt_2534_RC	10	13	10	7	17	8	20	5	36	9
TGCAAACTGATCTCTT	alt_2534_RC	143	170	162	116	172	112	129	117	151	103
GGCGACAATCATTATC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ATAAATCTTTTTTCGT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TGTGTAACAGGTGTAC	alt_2534_RC	11	28	13	15	26	11	19	16	29	17
GTTGCGGGATAAACAC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TAGCCGTGTTGTTGGA	alt_2534_RC	17	23	19	10	20	14	16	16	29	11
CCTTACCGGTTGCTTC	alt_2534_RC	0	0	0	2	2	0	0	2	1	0
AATATCGCGTAGTGAA	alt_2534_RC	65	85	76	77	105	79	105	68	108	78
CGCCAGCACATATTGC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TAGATTCTGGAATACA	alt_2534_RC	11	8	7	6	11	9	6	9	14	10
CTGGCTTCCCTCCGCA	alt_2534_RC	1	8	6	5	9	7	8	2	9	10
TGTCCGTGATGTGCGT	alt_2534_RC	7	10	8	5	5	7	11	12	11	2
ACGTATCATTCTCTGT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTATTTTCATAT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
TCAATGCATCTCCAGT	alt_2534_RC	19	18	11	6	13	6	16	15	16	10
CTCGACTTAGTTCTCC	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
ACGGGAAGGTTTTTCA	alt_2534_RC	34	49	30	33	29	34	48	29	55	24
GAAGGTCGATGTTGTG	alt_2534_RC	8	15	14	5	3	10	14	5	19	8
TGCTGCATACGGGCAC	alt_2534_RC	9	10	5	13	19	9	13	7	9	9
GTCAGCTTGGTTTCAT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CCGCCCATGTTCGATA	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
AACGTTGCAGGTGACT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GGGTTTGACCACGGCA	alt_2534_RC	35	37	59	23	54	36	36	40	47	40
CCGGTAACCAGCGAGT	alt_2534_RC	6	13	16	11	16	7	11	1	22	5
CTTTGGAAACCACCAT	alt_2534_RC	0	1	0	1	5	2	0	2	4	0
TTCTTCGCACGATCGC	alt_2534_RC	22	17	35	30	16	20	33	15	41	15
TTCGTTTGTGAAAAGA	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
CTGTCGGTTCCTAATT	alt_2534_RC	40	48	45	47	71	39	57	38	74	28
CCCTGCTTTGTTGCAA	alt_2534_RC	32	37	42	41	43	37	50	31	43	24
TTGCATCCACAAAGAA	alt_2534_RC	29	39	33	17	37	23	46	32	58	25
AGGTTCTAATCGGGGT	alt_2534_RC	0	0	0	0	0	0	0	0	0	0
GTTCAGGAGTAGTCTG	ref_840_negative	28	55	30	30	46	42	57	28	53	26
CGAATAGAAACATGCT	ref_840_negative	39	81	76	44	67	38	100	44	93	41
CGATTTTGTGCAGGTT	ref_840_negative	0	0	0	0	0	0	0	0	0	0
GGTGGCTACCTGCATG	ref_840_negative	6	17	9	9	13	10	8	12	13	4
GACTCGGGTCACGGCC	ref_840_negative	22	35	18	13	17	17	32	14	30	18
CGCACCACCGCGTACG	ref_840_negative	55	83	65	53	77	53	111	40	105	60
TGGAATACTTTCAACT	ref_840_negative	0	0	0	0	0	0	0	0	0	0
CAACCATTTACGGTTG	ref_840_negative	3	9	2	3	9	3	12	4	3	3
AAAATCGCAAGCAAAT	ref_840_negative	46	89	49	52	58	30	63	43	88	42
CTCGGTGGTTTATAAT	alt_840_negative	42	70	54	54	85	37	70	50	102	31
ATTCTACAGTTCGATG	ref_840_negative	59	105	61	54	101	62	94	48	96	36
TCCCCCTTAGAGGTGC	ref_840_negative	0	0	0	0	0	0	0	0	0	0
CTATATTTACAAATTC	ref_840_negative	13	16	11	9	28	16	26	15	27	11
GATATCTTTGGCTCCC	ref_840_negative	0	0	0	0	0	0	0	0	0	0
TTGTTCTCTGAAGCCT	ref_840_negative	20	49	15	19	35	12	38	20	47	16
TTAATGGCACTACGAC	ref_840_negative	0	0	0	0	0	0	0	0	0	0
ATATGCGCGGGCTGTC	ref_840_negative	13	17	8	10	14	11	10	6	15	12
ATATTATACAGCAAAT	ref_840_negative	33	52	34	46	46	21	66	26	69	32
CAATGCATCTGGCCGC	ref_840_negative	0	0	0	0	0	0	0	0	0	0
GGGACCGCACGATCTG	ref_840_negative	5	1	1	3	0	1	3	2	0	1
CTTTCTTCAAAGTCTT	ref_840_negative	17	34	31	24	35	24	28	16	42	17
GAGTGCGTCTCGGCCT	ref_840_negative	19	43	20	18	49	21	51	21	45	14
GCTCCCTTGGTAAGCC	ref_840_negative	20	37	20	13	37	17	36	19	37	24
CCCTAGATTGTTTCGC	ref_840_negative	20	60	27	20	66	28	51	18	51	17
TATTAACTTGTAGCCC	ref_840_negative	81	135	113	83	161	78	152	66	162	81
TGTCTGTTATTTTTCT	ref_840_negative	10	22	27	17	26	9	24	20	36	11
GAAGGTCCGATCTGGC	ref_840_negative	0	0	0	0	0	0	0	0	0	0
GGACTATTGGTTTCTA	ref_840_negative	15	41	20	13	29	13	29	25	42	16
TTCGGGCGTTCTAATG	ref_840_negative	48	76	47	39	61	23	80	35	71	33
TATAGTGGTTAACTAC	ref_840_negative	41	102	56	34	99	36	98	36	79	39
GTTGGATGTTGCTTAA	ref_840_negative	27	56	42	44	62	21	48	21	59	25
ATAGTACTTGTCTGGT	ref_840_negative	3	6	2	6	8	2	5	5	5	2
GCTTGGTTTGACAAGA	ref_840_negative	0	0	0	0	0	0	0	0	0	0
CCGTTGTCTCGGTACC	ref_840_negative	0	0	0	0	0	0	0	0	0	0
AGGCGTTTTTGAGGTT	ref_840_negative	55	63	49	39	83	38	81	41	77	32
TCTGTACGTGGCGGCT	ref_840_negative	20	22	28	28	20	18	35	18	26	22
TGTTCCGGAGAGGTGT	ref_840_negative	50	94	49	43	109	44	97	52	118	41
GGACTAGGAACGAACA	ref_840_negative	22	25	15	13	40	19	37	11	38	17
GGATCCGGAATGGCTG	ref_840_negative	8	14	9	13	10	9	12	10	24	12
GACTTTTTTCTAGTGT	ref_840_negative	30	73	28	40	64	30	74	34	86	40
TCGCATGGTACTGTGA	ref_840_negative	22	35	25	15	34	23	37	18	67	26
CGGAAGTGGTGGTCTA	ref_840_negative	11	7	16	15	8	5	18	8	18	7
AACCCTGCTTTCTTAA	ref_840_negative	27	37	28	17	45	22	49	17	45	23
GCCATTTGTATTGGGA	ref_840_negative	0	0	0	0	0	0	0	0	0	0
GGTTACGCCGTCCCTT	ref_840_negative	25	29	19	18	29	24	17	17	27	13
TGAAAGGGGCTAACCG	ref_840_negative	41	53	30	57	51	32	52	25	58	39
TCTTATTAAATCCTAT	ref_840_negative	57	80	67	57	94	51	89	49	108	45
ATTTCTTTCCTATTTT	alt_840_negative	62	77	69	61	103	62	109	52	82	55
CTCTTTGACATTACGG	ref_840_negative	37	93	45	30	93	28	75	25	59	25
TGTTAAGCCCCATCAT	ref_840_negative	0	0	0	0	0	0	0	0	0	0
TTAATGGCACTCCGAC	ref_840_negative	38	267	57	55	263	39	256	56	276	43
GTTGCCCGCCTATAGC	ref_840_negative	50	78	46	26	65	42	81	33	85	33
ACTCATCACTAAGTTA	ref_840_negative	0	0	0	0	0	0	0	0	0	0
AGTTCGGCGCTTTCAC	ref_840_negative	7	11	7	11	11	2	9	2	14	5
GGCTAGTTGAAGTGGT	ref_840_negative	7	23	21	12	22	16	21	5	23	6
TACTATACATGCCTCT	ref_840_negative	15	35	28	24	55	16	51	14	40	29
GCTTGTATAAAGCTTT	ref_840_negative	24	41	21	15	42	25	35	16	26	17
CTACCCTGCGTTTCCT	ref_840_negative	0	0	0	0	0	0	0	0	0	0
TTTTTCATGTTTTGTG	ref_840_negative	43	84	64	50	88	52	90	40	105	38
TTTACGGAGGAGTGGT	ref_840_negative	24	48	31	31	61	39	56	29	53	34
TGCTTGCCCCGTACAC	ref_840_negative	0	0	0	0	0	0	0	0	0	0
GGTGGGGGGCAGTTTG	ref_840_negative	12	15	7	15	17	13	15	9	15	14
GTTGGCATAACCATGC	ref_840_negative	91	195	129	103	217	111	224	117	224	83
TCGTTTGGAATGGAGC	ref_840_negative	46	82	56	46	80	43	73	51	65	37
TGTTACTGCGCACCAG	ref_840_negative	39	84	46	42	77	51	70	35	97	38
GGCGGGTAAAGTTTGT	ref_840_negative	77	140	75	55	141	64	137	75	148	67
GGCGTGTTGCGCCAAG	ref_840_negative	15	21	28	12	20	11	40	10	27	10
ACTGCGGCTCTGGAAT	ref_840_negative	1	1	1	1	5	4	3	1	1	4
CAAGGTGGATGTAAAA	ref_840_negative	51	85	63	48	84	50	69	46	85	42
CAGCTTGACTTAGTCA	ref_840_negative	0	0	0	0	0	0	0	0	0	0
GACTCCGCGTCTTCGA	ref_840_negative	5	8	4	2	16	3	14	4	14	5
AGTGGATCTCACAATA	ref_840_negative	63	85	67	61	116	71	109	70	109	66
TGTCGCTGTGTTTCAG	ref_840_negative	97	168	124	78	183	76	181	69	172	73
AAAGTAGGTCTACTTC	ref_840_negative	8	11	11	7	12	9	12	5	26	7
TATGCCGTAAGAGCTG	ref_2374_reverse	71	84	104	83	85	74	106	73	105	69
CGAATTTTACTCCTCT	ref_2374_reverse	6	5	3	5	5	2	3	2	2	3
TATAATCGCGCTTCTT	ref_2374_reverse	6	15	7	6	12	10	11	7	16	6
CAAGCGGACAGCTTTC	ref_2374_reverse	59	65	58	53	59	49	55	58	67	46
ATTAATCCGTCAGTGA	ref_2374_reverse	1	3	0	3	3	1	10	2	3	2
TTCGATTAACCGGCTT	ref_2374_reverse	6	4	6	3	9	13	5	7	15	2
ATTGATCGTATATATT	ref_2374_reverse	69	60	80	62	75	60	90	46	58	51
CTCGTGCTTTATGTCT	ref_2374_reverse	69	110	102	81	125	58	124	77	120	84
TGCACTTCCGATAGCG	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGGATAACGCTGATTC	ref_2374_reverse	28	31	38	24	32	26	33	29	48	23
GGAAGATGTGTTGTTA	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGCAAGGCTGGTTAGG	ref_2374_reverse	29	58	55	46	65	44	85	47	65	36
AACGAAGACAATTTAA	ref_2374_reverse	47	64	63	53	76	44	81	46	82	48
TTGTCTGCTAGTGTAC	ref_2374_reverse	35	39	29	27	26	29	36	23	44	31
CCGCTGCCTGTCAGGT	ref_2374_reverse	22	56	27	30	38	36	61	28	56	29
GAAATGCACTTGGCAA	ref_2374_reverse	10	20	19	18	20	14	25	21	30	24
GGGCGGTCTGTGCGAT	ref_2374_reverse	15	26	29	18	34	22	30	19	29	12
CCACCTCTTGTAGGTT	ref_2374_reverse	19	21	25	16	41	21	27	32	40	25
CGGCTTTGCCTCGTCG	ref_2374_reverse	36	57	56	26	50	38	70	26	63	24
AACCCGCTCTAGGTTG	ref_2374_reverse	30	48	46	23	58	32	53	22	57	36
CAGTCTGTCCAGGTGC	ref_2374_reverse	4	3	1	1	6	1	3	0	1	3
CGTGGGTCAAGTCGCG	ref_2374_reverse	31	43	42	28	45	27	42	23	47	28
AGGCAACTGCTATGTA	ref_2374_reverse	86	92	100	90	107	111	122	65	117	79
TCAAATATTTGTATCT	ref_2374_reverse	31	24	26	28	34	40	28	20	28	21
AAACTGGGACTTCGGT	ref_2374_reverse	9	15	17	8	18	13	14	15	19	12
CCCGTATCCGTTTTAG	ref_2374_reverse	5	7	2	7	10	3	6	6	10	1
CAAGCCTTGCATATCT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTCTTAATTTTAC	ref_2374_reverse	51	43	64	44	60	53	65	50	57	34
CAACTGATAGTCCAAC	ref_2374_reverse	12	7	13	15	19	9	16	8	15	4
ACGTTCTTTCCTGCGC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCTGTGGATGGTT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
ATTATCCAATAACACT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTTCAGCCCATTT	ref_2374_reverse	18	33	19	17	32	24	22	17	31	21
TGTGTTTGAGGGGAGG	ref_2374_reverse	13	18	21	21	18	19	27	16	32	9
GTATTCTCTTAATTCC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGGTTCCGGTACC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CCGTATTCGGATGTCT	ref_2374_reverse	80	87	105	68	71	95	95	75	82	67
GACCTATAAGGTTGTT	ref_2374_reverse	106	139	117	113	84	109	118	79	138	84
ACCCTTCGACAGCCTC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGAGCAGTCGCGGAAT	ref_2374_reverse	34	50	33	40	42	21	38	28	58	24
ATGTTGAGATACATAA	ref_2374_reverse	41	73	63	46	72	59	69	49	76	50
GCATTCCCGGCATTAT	ref_2374_reverse	23	23	21	29	29	23	15	24	30	27
GTTCTCTTCGAAATGG	alt_2374_reverse	20	15	18	21	27	18	20	10	15	20
GTGAGCCAGCTAATCC	ref_2374_reverse	31	35	47	39	39	33	34	20	55	23
CTACGACCATTGTTTT	ref_2374_reverse	63	85	76	67	78	62	75	53	86	43
CGATACTGTTGGTTCC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CGCCAGCCATCTATAG	ref_2374_reverse	20	13	17	19	31	21	22	14	18	19
TAATTATCCGTTCAGG	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
AGAAATTCTTGGTTGG	ref_2374_reverse	3	8	7	2	9	1	13	1	4	3
CGTTAATCAGTCCGTT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CATAAGTCATATAGGA	ref_2374_reverse	5	3	10	4	10	7	8	2	10	4
CGTATTGAGGCTGACT	ref_2374_reverse	5	7	9	12	4	6	7	6	4	16
TAGAGCGCACTCGCCT	ref_2374_reverse	25	60	45	40	55	43	63	31	55	27
TGTAACGCCGCGGGAC	ref_2374_reverse	37	52	48	44	48	35	49	39	62	31
GTGTCTCTGTTCATTG	ref_2374_reverse	13	13	26	14	29	24	25	25	18	11
GGCTATAAGATAACTG	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
GCGATAAGCGTCGCGA	ref_2374_reverse	33	38	41	35	34	31	31	37	46	33
GCCTGAGACCTCTTAA	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTTTGTTTCGACT	ref_2374_reverse	6	9	7	5	9	2	17	7	6	7
GCTTTAATAGCTTCAT	alt_2374_reverse	7	10	13	9	12	10	17	11	7	15
GTACGGAATATTTCCC	ref_2374_reverse	51	44	42	19	41	30	49	22	40	42
CCATCAGCGGCATTGA	ref_2374_reverse	63	101	74	58	106	65	78	57	102	56
TTTATTTGCTAAATTA	ref_2374_reverse	55	80	46	50	54	45	70	33	64	43
TTGATGTTCCGCTCAA	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGAGTGTCCTACC	ref_2374_reverse	8	12	9	17	25	11	13	5	23	4
GCATACTGCTTAAATT	ref_2374_reverse	26	30	40	24	29	27	38	20	50	30
CAACGCGGTGACGCCT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCAATCCACTACC	ref_2374_reverse	33	49	40	46	76	28	44	45	69	30
CACTCTTGGAATTTAG	ref_2374_reverse	3	3	7	5	11	4	2	4	7	3
AATAATTGTAAGTCGT	ref_2374_reverse	2	3	7	5	6	0	4	5	2	3
TTGGTTATTCTAAGCC	ref_2374_reverse	42	59	39	43	71	39	84	41	69	35
CATAATGTCGGGGTAC	ref_2374_reverse	64	86	47	40	91	38	67	63	86	51
CGCGAGCTCACATAGA	ref_2374_reverse	53	63	62	38	50	46	54	37	58	39
TTCCATGTAAATTCAC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
AATTCCTGGTCGAGCC	ref_2374_reverse	22	12	24	17	7	5	12	13	21	15
ATAGGCCGTAACGGGT	ref_2374_reverse	3	6	7	3	6	4	5	2	9	4
TACATACGGCTCCTTT	ref_2374_reverse	7	4	5	11	8	3	4	2	7	2
CGTTTATGAGTCTGTG	ref_2374_reverse	27	16	28	21	25	23	24	20	30	15
CTGGTTCTGGTCCTGC	ref_2374_reverse	21	32	23	19	19	21	20	22	35	20
TAGTCTAGGAACTGCG	ref_2374_reverse	29	23	24	19	24	12	21	27	35	21
GTTCCCCCTAAATTAC	ref_2374_reverse	36	35	39	25	24	35	43	18	34	25
TATTTGTCTATAGCCA	ref_2374_reverse	44	51	61	51	81	59	87	44	59	58
TTTTATTCTTCATTCC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTCAAGATATCGA	ref_2374_reverse	10	17	10	9	22	7	17	8	10	5
TTCCCCCGTTGCCGAA	ref_2374_reverse	9	16	12	10	19	16	22	13	19	21
TTCGCAATCTATTGGA	ref_2374_reverse	40	51	54	49	43	34	62	53	40	35
TAGAGCACGGTCCTTA	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGGCGTCCGTCG	ref_2374_reverse	15	9	11	9	16	8	15	5	13	15
GCGGCCGTGGTCACGT	ref_2374_reverse	16	25	20	21	23	19	22	17	25	16
TGTGTCTAGCCTCAGC	ref_2374_reverse	11	14	12	10	16	7	16	14	16	11
TCCGTCAAATTCCCCT	ref_2374_reverse	57	70	56	61	71	50	56	61	79	39
CTAGACCGCTTACTCT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CATCGCACTACCGCTC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATAGTTGCTTCA	ref_2374_reverse	81	100	106	96	84	79	117	76	100	71
TTGTTGGCCAAAGTTG	ref_2374_reverse	155	190	150	147	221	157	198	142	223	123
CCCTACCTATCTATCG	ref_2374_reverse	15	26	18	17	26	17	31	12	28	22
CTATGTATGCACGACT	ref_2374_reverse	118	186	156	121	165	143	190	128	171	138
ATTTCTTTGGTTTAGC	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CTGATTTATAGAATTT	ref_2374_reverse	11	17	14	11	14	12	19	6	13	13
TACTTCTGAGGAGGTG	ref_2374_reverse	4	4	6	6	12	5	9	2	7	2
ATTCCCCGTAACTATT	ref_2374_reverse	9	32	11	5	26	2	27	5	37	3
CAGCGCAGTTTTGCAA	ref_2374_reverse	27	48	31	21	44	27	51	34	53	30
GGCAACATTGATGCGC	ref_2374_reverse	74	95	84	81	109	86	125	76	133	72
CAATTTGGATTAGACC	ref_2374_reverse	46	48	45	56	57	43	57	39	57	43
TTTAAGGGATTCAGAT	ref_2374_reverse	90	109	112	80	110	74	119	78	109	82
GTCCCAAGTGATTCTT	ref_2374_reverse	69	81	74	72	69	67	93	68	96	53
ACACAGGTAATAATTG	ref_2374_reverse	1	8	2	5	5	4	4	3	4	5
CTCCTTTTCCTGTTTT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TCATATTTTTCCCGAT	ref_2374_reverse	43	53	33	33	57	34	40	48	45	45
GTCTCTTAGTCCGTTG	ref_2374_reverse	13	25	38	14	17	20	31	13	38	15
CTTCTCTGGGCATGGG	ref_2374_reverse	21	18	17	24	22	18	14	14	20	10
CTATTAATGACAGTTT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
GGCAAAAATCTGCAAT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
GTTATTTTTACTTTGA	ref_2374_reverse	68	96	73	63	92	65	98	99	105	81
ATACCATCTTATGAGC	ref_2374_reverse	33	41	46	34	45	29	42	22	41	14
TCGAGCCTCGATACGT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGCATCTTCTAAT	ref_2374_reverse	6	25	12	3	13	3	12	9	8	8
GTTTGGGGAGCAAGTC	ref_2374_reverse	16	27	30	24	22	22	30	24	31	30
GTACGACGTTGCCCTA	ref_2374_reverse	125	148	148	133	146	106	150	109	183	102
AGTCCATGGGTGCTAG	ref_2374_reverse	46	41	43	28	52	28	54	27	38	29
GAACTATTCGTAGCCC	ref_2374_reverse	47	76	56	48	51	39	54	41	71	47
TATTTATTCACGCAAA	ref_2374_reverse	61	59	66	64	51	43	59	68	59	40
CTTCCGATTTCGAGCT	ref_2374_reverse	1	0	1	0	2	1	0	0	3	1
AAGACTATGGCCCTTT	ref_2374_reverse	35	34	35	39	44	39	40	37	37	33
AAAGCTGTCTTGAGGA	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTGTAGTGACCGGTGC	alt_2374_reverse	32	25	27	22	33	39	20	25	36	20
AGCGCCGTGGATTTCT	ref_2374_reverse	25	36	32	28	37	20	23	23	30	12
GTGCATAACGCTATCT	ref_2374_reverse	41	38	61	34	53	28	59	53	47	42
TCATAGTTCGGGAGAT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGCCTGGTACCAT	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
CGGGCCATAGTTCCTC	ref_2374_reverse	11	19	22	7	23	17	14	9	20	15
GCTGAGTCCCCTTCGG	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTGTTCTACATAA	ref_2374_reverse	20	39	31	18	38	27	21	17	26	20
CCAGCGTTTGCAGATC	ref_2374_reverse	35	110	53	38	127	29	135	41	131	39
CCCGCCGTTATGCTCC	ref_2374_reverse	0	3	1	0	0	1	0	0	0	0
CCGGTCCAAGGCACTC	ref_2374_reverse	1	2	0	0	2	1	4	1	2	0
CACTAGGTCTGTTATG	alt_2374_reverse	269	388	312	248	431	256	374	226	401	198
TGATCTAATCAGCCTG	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCTACCCGCAGTG	alt_2374_reverse	26	63	52	51	49	46	71	33	68	39
CGCACTTCAGCTTTGT	ref_2374_reverse	28	36	29	28	37	23	48	17	36	23
CTCCGTTGCATATGCA	ref_2374_reverse	15	64	23	23	59	21	56	12	70	11
CTCCATCTGTACAAGG	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGGATGGTCTTCGTGG	ref_2374_reverse	5	6	4	2	6	6	6	9	6	4
TCCATAAACACCGTTT	ref_2374_reverse	2	7	3	5	0	3	2	1	2	4
GTTTTGGTATAAGGTA	ref_2374_reverse	72	70	64	63	71	71	91	41	99	59
GAGATAGATTTCCTGG	ref_2374_reverse	5	2	4	0	7	6	4	5	1	4
CCATCTACCTTTGACT	ref_2374_reverse	3	1	3	3	0	2	1	1	7	0
GCCAAATGGCAAAAGA	ref_2374_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTGTAGCTCCCTT	ref_1617_upstream	62	77	79	61	62	58	77	43	73	43
TCATACACATGCCGGT	ref_1617_upstream	43	36	58	36	62	56	68	50	60	57
GGCGGGGTTGATTTAC	ref_1617_upstream	14	13	17	9	10	12	17	5	9	4
TCGACTGTGCACTGGG	ref_1617_upstream	89	78	84	72	65	69	101	74	78	69
AATGACCTTTGGACGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
ATTAAGTCCGCAGATC	ref_1617_upstream	56	67	82	67	59	63	64	61	55	79
CTTCAGCCACGCCCCA	ref_1617_upstream	7	31	5	7	24	5	25	9	24	8
ATGTGCAAGCGCTGCG	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACGATCCACAAGGGTT	ref_1617_upstream	120	112	120	142	110	97	88	111	116	100
AGCGCGCATGCGGACG	ref_1617_upstream	25	30	34	37	41	49	54	26	47	34
AACCTTATTGGTACAG	ref_1617_upstream	5	4	4	5	10	1	2	9	6	3
AAGATATTCCAGCTAG	ref_1617_upstream	23	17	31	21	24	23	24	20	29	21
TTAGCAGGGTCCTTTC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAGCTGCTTTTCC	ref_1617_upstream	14	18	10	14	13	13	8	10	15	6
CTTTATCTCGTAATCT	ref_1617_upstream	48	51	57	50	55	42	49	41	48	30
CGGCAAAATAGACTAT	ref_1617_upstream	10	5	5	7	7	7	3	5	5	1
CGGATAGCCTCCGACA	ref_1617_upstream	19	16	18	24	28	19	23	17	25	22
ATATTGTCGGGACTTA	ref_1617_upstream	3	7	7	5	3	6	1	2	2	3
ATCGTACATCATCCGC	ref_1617_upstream	32	71	21	19	57	27	55	22	52	16
ATCTTGCGGTCTGCCC	ref_1617_upstream	18	23	26	29	23	23	18	23	25	20
TGTCCCGCGAACTCAT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTTGTTGCTGAA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTATAATCCGAG	ref_1617_upstream	37	35	51	47	37	29	45	47	36	34
TTTTACGCTTCCGTCC	ref_1617_upstream	9	13	12	7	4	6	16	11	17	7
CTTACGCCTCTCTGTA	ref_1617_upstream	44	64	64	65	61	50	87	64	87	43
TTTTTAAAGATTATTC	ref_1617_upstream	11	8	15	8	14	9	3	6	11	5
GCAGCATCATCGGTTT	ref_1617_upstream	12	19	13	11	14	5	15	4	15	5
GGGCCGGGAACCACAA	ref_1617_upstream	46	47	69	53	64	48	58	43	43	36
GCCCTATGGTTCATAC	ref_1617_upstream	46	43	46	47	59	31	52	41	44	49
GGCCTGTAAACTTGGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTGGTAAGTCGAC	ref_1617_upstream	22	21	20	18	18	13	17	29	22	12
AGCGCAGTAAGAAGAA	ref_1617_upstream	17	16	24	16	17	28	23	21	14	19
AATTGCCGTGATCGGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTCTAACATCCAC	ref_1617_upstream	7	12	14	10	9	12	10	5	16	18
ATTCTTGGCTGCCTTA	alt_1617_upstream	15	23	27	22	25	18	24	32	21	18
AACTGCTGGCCCTGTA	ref_1617_upstream	13	22	24	30	24	18	21	20	29	26
AAAGTCTCTGGATACG	ref_1617_upstream	6	7	10	8	7	10	10	10	3	2
GGTTTCCACTTGTCGG	ref_1617_upstream	8	12	7	5	9	6	12	6	7	6
ACTAACGCGCTCGTGA	ref_1617_upstream	37	39	56	57	54	31	47	49	54	40
GGTCTCGGCGGCATAA	ref_1617_upstream	95	124	125	96	125	79	135	102	144	90
TGAGTGAGAGCCATGA	ref_1617_upstream	12	5	9	3	9	9	7	4	11	7
CCCATTTGTTATCTTA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
AACTTGGATCACACCG	ref_1617_upstream	60	59	68	55	82	60	78	49	76	64
TTGACGGTGAGCGGTT	ref_1617_upstream	4	4	1	1	4	1	2	8	1	1
GCAGGAATGTAGGTTT	ref_1617_upstream	82	92	118	96	109	95	85	102	114	85
TGCGGACTTATTTATG	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
AACGGCACAAGTAGCG	ref_1617_upstream	19	6	20	10	8	15	12	18	23	18
TTTCTATTCTTCTACA	ref_1617_upstream	10	15	17	11	11	15	18	15	10	15
TATTCGCGTATTCCCT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTGACCCTCTTCG	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGCGAGTCATCGGTTC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCGCATGGTGGAT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
AATGTCCCGTTTGCCT	ref_1617_upstream	6	2	13	6	6	4	10	15	9	4
CGAGCGAACGCTGCAG	ref_1617_upstream	120	166	155	128	157	104	158	119	160	127
CTCTCTTGATTTTTGT	ref_1617_upstream	74	51	81	64	69	65	50	75	68	58
CGTGGGCGGAGTTTCC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGAGTTCTTTCAT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGTTGTTATACGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTAATAATTGGCA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GATCCTACTCCCCCGC	ref_1617_upstream	0	9	0	0	2	0	10	1	6	0
ACCGGTAGCAGGTGCC	ref_1617_upstream	1	8	0	0	12	1	12	2	8	0
TGCGACCTCTTTTATC	ref_1617_upstream	8	4	5	12	6	6	10	5	11	6
ATATTAGGTTCTTGTG	ref_1617_upstream	2	0	3	0	2	1	0	1	0	0
CTCGTACGGATTCTCG	ref_1617_upstream	60	78	63	82	85	62	69	79	81	58
CTCTATTCGGCCAAAA	ref_1617_upstream	42	90	75	57	47	59	65	49	52	48
GATAGCGCTTGGGGTT	ref_1617_upstream	10	15	12	15	21	7	14	7	14	11
GGTCAGGTGCGTTTAG	ref_1617_upstream	3	1	1	0	4	1	0	3	0	2
ACACCATTGAAGTTTT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTAGTACTGCGC	ref_1617_upstream	54	57	72	62	81	39	74	57	76	46
TAATATGCTGTAAACG	ref_1617_upstream	7	6	12	15	17	8	6	8	12	8
ATGTGTAGGTCGATGT	ref_1617_upstream	0	2	0	3	4	3	4	3	4	2
TACAGGGCTCTCGTCT	ref_1617_upstream	2	4	1	3	3	4	5	4	5	1
AGGACCCAAGTTTATT	ref_1617_upstream	56	73	87	100	92	88	108	63	84	71
GCCGTTCGTATAAGGA	ref_1617_upstream	52	60	87	75	80	53	70	39	56	49
CGATGAAAATCGTTGA	ref_1617_upstream	1	5	7	6	7	2	0	0	7	6
CTCCAACTCCTCCATT	ref_1617_upstream	2	3	1	3	2	1	3	2	5	2
GCATACTAGGTTTACA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCATCGGTAGATTCGG	ref_1617_upstream	87	98	94	99	111	100	97	80	132	79
AACCGTTCTCTAGGAT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACAAATCATATGTGGT	ref_1617_upstream	8	7	11	7	11	11	11	9	15	11
TCATATCGTAGGTTTG	ref_1617_upstream	3	4	11	6	2	5	2	7	3	5
ACTTCGTGTCTGGTAC	ref_1617_upstream	9	11	9	8	8	8	8	8	12	10
GCCAATCCTTCGGCGA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGAGTTTACGAGC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTTATAACCCGTCGGC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GAGTAGGTTATCAGGC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCATACTATCTAC	ref_1617_upstream	6	6	3	4	10	4	12	5	9	1
GCGCCGGTTTCTTCAT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GATTGTTCAAACTCCG	ref_1617_upstream	6	3	4	5	4	3	6	6	6	6
CTAATGATAGACGGTT	ref_1617_upstream	42	40	50	38	30	38	36	45	54	41
CACCAAGTTACGACGG	ref_1617_upstream	6	21	12	13	20	10	14	14	18	19
TTTCGCTATTCGTAAC	ref_1617_upstream	72	75	114	75	75	75	88	68	114	78
CTTATTAGGTCAAGAC	ref_1617_upstream	126	113	133	105	123	102	112	105	137	90
AATTATCCGCCGTGCC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTATCACGGATAAAGG	ref_1617_upstream	10	11	6	17	13	11	19	15	13	9
GAATTCTTGGGACGGT	ref_1617_upstream	19	11	17	5	7	19	17	16	15	12
TTGTTAATATTTTTTT	ref_1617_upstream	16	11	19	17	12	14	12	9	9	14
TTGCTCGATTCAAATA	ref_1617_upstream	28	44	41	30	34	25	27	29	33	22
CTTCCGCCCTCAGAAG	alt_1617_upstream	94	108	136	93	103	104	122	88	125	93
CGCTTGGTTTTTTTGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCACAATGGACTCCGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCTTAGTATCCGG	ref_1617_upstream	16	32	17	6	15	11	23	11	23	10
TGGCGTATCGGGGTAT	ref_1617_upstream	9	8	15	11	9	7	12	9	6	19
ATCACAGACTACTCGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCTTGCTCGATCT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCCCAGTCGTAGC	ref_1617_upstream	2	1	2	1	2	3	4	5	3	2
CGTCCCCGTATGTTTG	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCATAATGGCTAC	ref_1617_upstream	22	20	26	21	10	21	24	16	13	26
ATTACGCCGGGCTTAC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GAATAGTTTGTCTTCA	alt_1617_upstream	78	82	125	115	73	97	107	96	104	90
CACGGTCCTAGTATCT	ref_1617_upstream	80	81	71	76	74	64	75	82	92	70
TCGGAGCATACCGCTC	ref_1617_upstream	48	50	48	42	66	25	52	38	36	32
ATAAGTATTAGACGTG	ref_1617_upstream	14	37	28	31	22	19	19	7	27	20
GTCGGAGGCTTCGACG	ref_1617_upstream	7	0	8	5	5	11	5	5	6	3
GTGCGCCAACACAGTA	ref_1617_upstream	10	7	11	11	9	5	5	3	8	9
CCGTAGGTCAAACTTC	ref_1617_upstream	44	36	47	52	50	36	54	42	58	52
GATTAATATTAGCCTC	ref_1617_upstream	2	11	5	3	5	7	7	6	6	4
TGGAGAAACGCTGCTA	ref_1617_upstream	8	11	12	7	6	3	7	3	7	5
CTTATACATACAATTA	ref_1617_upstream	13	13	14	12	21	7	13	13	21	12
TACACGTTATTTCTGA	ref_1617_upstream	29	29	39	41	38	38	34	24	38	14
GGACTATGATTGTGTC	ref_1617_upstream	27	20	39	25	31	26	25	28	23	23
TGACCTTTTTCTGCTG	ref_1617_upstream	53	53	57	55	79	71	57	64	73	63
CCCCTGGAGTCATACG	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCTGGTTTTAAT	ref_1617_upstream	6	8	4	6	5	7	4	10	4	6
AAAATAAAGCAGATTA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GTTGATTGTTATCCAT	ref_1617_upstream	6	10	3	1	7	11	5	9	5	8
GGTCGCCCAGGCTAAC	ref_1617_upstream	58	68	96	77	59	79	78	63	78	69
TTCTCCCCTACACCGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCATCGCACGGTTCAT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCTTCGTTATAGG	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGCTCTTTGTTGA	ref_1617_upstream	2	2	4	2	9	3	9	4	5	3
TGCTTAGATTAAAATA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCAGGGGGCAATT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCCACGCAGGTTG	ref_1617_upstream	5	4	3	6	5	4	10	2	3	2
ATGGCCGCTCATTTAT	ref_1617_upstream	19	13	17	22	22	24	28	14	16	18
AAGCGTTATCCATCGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCGTTTATGTGGT	ref_1617_upstream	10	14	11	9	15	4	14	8	9	7
GACGCCTCTTGTTCCT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CGGACACACGCCTGCT	ref_1617_upstream	15	16	26	13	12	17	14	16	10	10
AACCCTTTCGATTCTC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCGTCTGGATTGC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
AGTAAGTGAACAAGTA	ref_1617_upstream	3	6	2	7	4	12	11	4	16	4
GCTTTTACTACTGTGT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GGGACGCCAGCGCACA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGCCAGAACACGT	ref_1617_upstream	13	21	29	23	26	21	30	18	13	24
AATGCCATCAGCATGT	ref_1617_upstream	2	2	1	0	1	0	1	0	3	1
AGCAGGTTTATATTTC	alt_1617_upstream	11	24	15	11	10	14	21	16	16	13
CTATATTCGGCATGTG	ref_1617_upstream	17	24	13	18	9	5	14	17	15	10
ACACTCACTACTAGTG	ref_1617_upstream	60	88	71	52	91	53	91	55	90	55
CACCACAATTTCAAGT	ref_1617_upstream	3	3	15	12	13	14	9	15	18	12
TTTGGGCTAGCGCGAA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CGGTATCAGAGCCTGA	ref_1617_upstream	12	7	19	14	4	5	10	14	13	7
GTGTGCCACCTCGATT	ref_1617_upstream	60	73	81	77	101	61	91	52	77	47
TTGTCGCTCTCTGAAC	ref_1617_upstream	43	34	43	39	36	37	33	23	34	34
CGCTAGGAAGCAGAAC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGTATTCCCCTC	ref_1617_upstream	21	27	39	13	31	16	25	25	19	21
CTTGGAACTTATAGAA	ref_1617_upstream	22	22	26	30	16	19	43	27	26	23
AAGTCGACCAGTCGCA	ref_1617_upstream	15	11	4	5	12	9	11	9	4	9
TTCTTCTCTATTCCTT	ref_1617_upstream	1	1	3	0	2	1	5	5	0	2
TCTTTGCCAACATTTA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TACGTCCAGTCAACAC	ref_1617_upstream	20	13	16	15	15	16	17	10	16	20
GAGCATCCGAGTTTTT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCCATTCGCCGCC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
GTCAATTTGTAGGATT	ref_1617_upstream	81	76	77	66	64	57	70	69	83	70
ATGTGACTGTAAATTC	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
CGATCATATAGCGTAT	alt_1617_upstream	366	312	403	352	348	285	331	353	320	303
TTCCCAGCGACATCTT	ref_1617_upstream	143	165	260	210	192	191	176	186	163	174
CACTATTGCCTTTCGT	ref_1617_upstream	14	17	22	11	21	13	16	19	17	9
TGCCGCGCAAAGCGAT	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
AATCTCCGATCTGCAA	ref_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTACCCGTCATAATCA	alt_5799_new	104	70	118	92	67	86	66	91	87	77
ATAAAACGGATAAATG	alt_5799_new	83	37	53	60	43	46	46	60	36	43
AATGTGACTATTGTTC	alt_5799_new	8	5	10	13	3	6	9	10	12	11
TGCACGGGTCCCTTTT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CATACATCTCAAGAAC	alt_5799_new	95	69	118	89	71	78	67	67	40	65
GCAAACAGGTATTTTC	alt_5799_new	15	11	29	33	14	19	7	16	9	12
GATAGGAGCGCGGTTG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GATAACATGGTTCGAG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TTTGATCTTGGCTTGG	alt_5799_new	11	2	6	9	4	4	3	10	0	9
AAGGTACCCCGATCGC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CCCTGAGTGGGTACAC	alt_5799_new	16	16	34	34	23	33	17	26	19	21
CCGTAAACTTGTCGTC	alt_5799_new	2	10	2	4	11	2	9	0	5	7
ATCGCTAGTTCTGCTG	alt_5799_new	10	4	10	11	1	5	1	15	10	6
TCCCGTAAGGCATTAC	alt_5799_new	35	28	33	35	31	28	30	25	34	36
TGCCCAGGAAGTGCGC	alt_5799_new	12	10	14	10	9	9	6	17	5	24
TCTCGGGTGTGGTGGA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GTCAAAGGATTTTTTC	alt_5799_new	127	76	135	132	76	127	76	135	85	121
TTAAAATTATGTATCG	alt_5799_new	40	19	47	26	36	34	19	44	19	25
ACTACTTATAGAGTGG	alt_5799_new	215	161	271	242	129	225	163	235	136	186
TTCTCTACGATTTTTC	alt_5799_new	35	14	45	31	13	23	29	26	13	39
TATACGTTATTAATGG	alt_5799_new	3	2	5	3	2	6	2	6	5	4
CTTCACGGATAATAGG	alt_5799_new	26	18	40	41	28	36	24	34	20	32
GGTACCACGTCTATAG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
ACATCCGCGATTTCAA	alt_5799_new	32	12	40	38	18	26	32	24	26	32
AGTGACAAATGACCGT	alt_5799_new	29	13	26	27	7	28	21	15	7	12
TTTCTTAGCTGGGCTC	alt_5799_new	7	5	13	5	9	7	5	7	9	6
CACGTACAACTATCGC	alt_5799_new	25	41	39	31	35	22	27	37	44	22
CATTAGTAACCGCAGA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GAGTGACTGCTCGTTT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GCGTTCCTTCCGTTGG	ref_5799_new	57	32	69	53	30	46	24	54	39	61
TCAAAGCGTATAAACC	alt_5799_new	75	54	121	75	57	85	42	89	48	67
CTCGGTCGATCGCTGC	alt_5799_new	10	27	16	16	39	9	41	10	37	10
ATTGGAATGATTTGTT	alt_5799_new	12	14	14	14	5	13	9	8	10	11
CATACTATGCCCTGCA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CCCATTTGATTTGATT	alt_5799_new	20	13	20	13	15	11	9	17	11	9
CTTTTTATAATGTTTT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GGATGTCATATATGCG	alt_5799_new	37	22	40	24	33	29	22	23	28	32
AATACACGTCGGAGGC	alt_5799_new	21	11	28	22	8	16	10	13	18	18
TCGTGCTAAAGCTCAA	alt_5799_new	65	43	95	69	32	56	38	85	65	56
ATTCTGTAACGCTCGA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GAGCTCTTTCCTTGTC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
AGCTGTACTCTTTCGT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TTGATTGTTGTGCCTA	ref_5799_new	74	57	111	90	39	86	56	86	55	64
ACGTTGTATTTTTTTA	alt_5799_new	31	26	43	45	15	42	20	36	24	38
CTTACTCACCTTTAAA	alt_5799_new	8	88	9	10	92	12	93	9	84	8
AGTAGTTTCGGCTAAG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
ACGACAGCATAACGAC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TTGTCCGTATAATTGA	alt_5799_new	33	24	49	43	29	48	22	41	22	34
GCATGGTATCCTAATC	alt_5799_new	54	35	67	71	28	58	36	61	36	59
TGCATTCAATCCCAGC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
AGCCCGAATGGTCGGA	alt_5799_new	34	19	34	35	27	25	24	22	27	29
GCCAGCTCTAGACGCG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
AATAGTAGCTGCCGCA	alt_5799_new	74	55	115	86	60	72	62	90	52	94
AGCTTAAACTTCACAG	alt_5799_new	192	86	210	182	99	161	117	154	101	170
AGCTTTCGCGTTGTGC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TATTCCTATATTTTGG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
ATCTTCGTGGAAGGTT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GGGATAGCGCTACATG	alt_5799_new	9	8	15	4	1	4	2	3	8	7
CCAATATGCAGGAAAT	alt_5799_new	21	8	16	12	9	9	10	14	10	9
CACTCAAAGGTATTGT	alt_5799_new	20	18	19	16	16	14	15	20	18	14
GGCTGCATGCGGGATT	ref_5799_new	5	1	12	2	4	7	5	5	2	8
GTCCTGCTGTTAACAC	alt_5799_new	47	31	62	52	40	48	37	43	43	52
TCATCGCGGCCACCTA	alt_5799_new	26	35	53	32	31	30	30	39	38	34
CGGCCTTCAGTCGCCT	alt_5799_new	17	18	23	17	11	19	4	14	9	15
GTTATGCCGTGTTCCT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TTCGTCCCAGCTTTCA	alt_5799_new	74	48	83	63	51	86	47	77	54	80
TTCTTTGCATGCCCGC	alt_5799_new	16	13	11	15	10	7	4	16	9	13
CGCCACTGATTATGAC	alt_5799_new	229	166	282	240	162	203	153	232	156	211
TATAGTCTGGTCTTTT	alt_5799_new	291	179	312	280	197	249	229	213	196	256
TAAGGAATTGATATCA	alt_5799_new	69	58	106	78	50	75	51	85	46	69
TGACGTCAAAGTTTCC	alt_5799_new	77	59	102	74	39	77	56	84	73	77
TCTGTCGTATTCTGGA	alt_5799_new	53	35	60	39	30	55	27	49	38	48
TTAAGCATCGTTTTCG	alt_5799_new	34	12	30	34	26	29	24	31	26	25
ATACGGTTTCTGCTTA	alt_5799_new	79	50	102	79	43	55	49	77	39	69
TATTTGCGATTAAGCA	alt_5799_new	16	10	22	14	8	11	18	11	13	18
ATTCAGGCTCGCACTC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
ACAAATACAGCTACGC	alt_5799_new	70	39	54	40	35	53	37	50	31	36
TCAGCTGGGGTCCCCA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CTTGGTTCGGTCTAAT	alt_5799_new	64	47	80	67	49	67	60	92	53	71
CGACTCCCACCTTTCT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CATTCTCTTCATTTGG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TATCATTTACAGATCG	alt_5799_new	34	40	50	67	41	47	45	42	49	33
TATACGTTCGCGGGCG	ref_5799_new	156	89	179	155	82	165	83	164	113	144
TATCCTCTGCTTAGGG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CGTCTGTCAGTTCATC	alt_5799_new	133	86	173	142	77	128	103	104	89	128
TTGCTGGTACCCCCCA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TACTGGTGAATGTTTC	alt_5799_new	173	105	222	174	104	171	112	164	127	132
CCAGGAATCAGGCCCT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CCTAGGCATCTGTTGA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GCGCCCGTTGGCATGA	alt_5799_new	82	61	102	87	46	92	56	78	43	60
CGTACGGGACCAGCTG	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CTCTGTGGTCTATAGA	alt_5799_new	26	22	39	27	21	44	21	26	27	29
ATCGATCCGCAGGGCA	alt_5799_new	120	63	149	109	90	119	74	130	73	106
AGATTTTTTGACTTAC	alt_5799_new	8	10	20	12	3	16	4	11	8	3
GAGCAACCATATGCAA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GCAGCTTACGGATATG	alt_5799_new	10	9	6	10	5	10	2	12	9	11
AAAAACGCGATGAGCA	alt_5799_new	41	35	62	55	21	54	39	44	34	52
TGCGCATTCGGCTTTC	alt_5799_new	51	31	75	51	27	53	31	48	32	63
TTCCATGGCATAGGCG	alt_5799_new	56	39	79	51	34	57	46	56	37	60
GCGGGTTGTCACATCT	alt_5799_new	35	15	29	37	23	18	16	43	21	34
GATCGTCGTGTCCATG	alt_5799_new	37	24	52	40	29	43	23	27	30	48
ACGAGGGATGTTCGAC	alt_5799_new	77	60	86	80	41	61	50	72	41	76
AGCAGTCTGAGTCTAC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
GGGTGGTGATATTTTA	alt_5799_new	14	14	29	12	7	15	9	14	10	11
GTTACTTTTGTTGCGC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
AACGCTGAACGTTCAG	alt_5799_new	143	75	160	165	90	162	110	147	101	145
ATCCATCCGAAACCTA	alt_5799_new	5	5	12	8	7	6	5	7	4	3
ATCATTACATAAGCTC	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CCTGCCCACCAATTTT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
CATCTTTGCGTAGGAC	alt_5799_new	66	21	76	89	31	86	30	58	42	57
CCGTTCATATCCCCAC	alt_5799_new	23	8	28	17	19	19	19	22	21	20
GTTACAGCCCATAAAT	alt_5799_new	0	0	0	0	0	0	0	0	0	0
TTAACCCGAACGAACC	alt_5799_new	23	30	34	27	18	29	29	36	27	24
GCCGAGGTTTAACGTG	alt_5799_new	41	25	52	40	16	46	35	41	26	32
CCACACTCCGCACGGT	alt_5799_new	34	17	21	26	18	19	18	39	24	22
GCAATCGGTCACACTT	alt_5799_new	34	35	72	59	29	42	35	45	43	54
ATTATGTCGGTTATGA	alt_5799_new	0	0	0	0	0	0	0	0	0	0
ATCTATTAACTCTGCT	alt_3781_upstream	7	1	1	9	2	2	3	5	6	0
CTATTCAGCTATGATA	alt_3781_upstream	9	9	11	13	6	13	5	18	10	16
TCTGACATCAGTCACA	alt_3781_upstream	86	54	107	109	52	81	48	108	65	79
CTATGACAAGATTCCC	alt_3781_upstream	29	15	24	22	13	21	20	29	18	14
GTCATCGCAGAGGCTG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TGGGAAACCAAGGGTT	alt_3781_upstream	10	4	10	20	6	13	5	11	6	13
TCGGCATTTGCCTAAT	alt_3781_upstream	145	88	198	169	109	145	110	154	111	139
CCGCGTAATCAAGAGC	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCGTCTTCACAT	alt_3781_upstream	58	57	73	76	44	63	40	83	47	63
TCTTTGATGTTATATA	alt_3781_upstream	9	9	12	6	5	3	15	9	7	7
AACAAGGCTCCAGAAT	alt_3781_upstream	66	51	65	68	44	68	38	54	44	58
CTGCTCTGGTTATTTT	ref_3781_upstream	305	175	407	330	183	300	197	313	177	283
AGTGCATTGTGGTATG	alt_3781_upstream	44	31	57	54	43	47	38	52	55	33
CCTTAGGACCTATATT	alt_3781_upstream	39	23	52	37	16	25	36	36	16	35
GCTTGACTCAAGATAC	alt_3781_upstream	55	48	69	70	39	52	36	36	32	52
TGCGAATTGCGTATTC	alt_3781_upstream	62	46	67	53	35	50	39	49	32	58
CCCATAGAATTGGAAA	alt_3781_upstream	30	21	41	31	25	32	19	33	26	33
AGGGTTCAAGTACATT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TTATAGGTACTACCAG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTTTAGCTCTTCGCGG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGCCACAGGGAAT	alt_3781_upstream	36	39	61	44	30	31	36	51	35	37
TAGCCCCTTGGTCCAT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTTGTCCTTAGTG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGTGATAACCACG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GGTGAGCTCTACTAAT	alt_3781_upstream	11	11	21	10	10	16	16	22	9	20
CGGGCTATGCACTCTT	alt_3781_upstream	20	20	24	24	16	20	18	10	25	11
TCGGTGGTTGTCATGT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTAATTATCACTG	alt_3781_upstream	15	10	25	23	12	14	11	19	16	13
ATCGCGGTTCTGAACA	alt_3781_upstream	20	20	20	25	15	23	9	23	16	14
TTGTCCGAGTGGGTGG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGCATTGGACGTA	alt_3781_upstream	29	38	55	28	53	31	51	29	44	38
TCTAGGCTTGAATGGT	alt_3781_upstream	56	40	70	57	43	48	52	59	48	51
GAACGGATGACGTTAT	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
TTCACAACGCCAAGAG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTTTTCCTCTGGC	alt_3781_upstream	7	9	13	10	7	8	7	6	9	7
GTTCCCCACCAACTAC	alt_3781_upstream	30	22	38	20	18	30	28	28	21	27
GGACAGGGGTGTAACG	alt_3781_upstream	13	13	22	20	10	19	19	15	14	11
CGTGCTGTGTTTACAT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGATTGGCCACTG	alt_3781_upstream	16	16	27	27	7	18	12	20	12	20
GGTTTGTATACCGATT	alt_3781_upstream	207	147	295	228	165	232	170	180	161	169
GGTTAAGGTAGAATCA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
CACTGGCAGGGCGGCT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTTGGTCTCCATG	alt_3781_upstream	19	25	34	18	17	19	21	15	23	18
GGGGTGTCCTCTCTGA	alt_3781_upstream	106	53	126	94	38	93	46	83	51	80
TGGGACGCAGTCTCGA	alt_3781_upstream	3	4	8	6	0	9	3	3	2	5
TTCTCAGAAAGTGACA	alt_3781_upstream	55	51	58	52	30	50	32	48	37	47
GAACTGGACGATTAAC	alt_3781_upstream	20	8	32	32	19	31	20	26	22	24
CTTCGTACCTCGGGAA	alt_3781_upstream	86	51	115	82	55	74	67	103	68	82
CGTATGCGGTAGGGGT	alt_3781_upstream	159	114	183	150	114	132	101	127	145	111
GTACGTTTCCTAGCTG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
AGCAATAATCAGAGGA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TTAAGGACAACATCTG	alt_3781_upstream	35	14	30	22	21	27	25	22	18	36
TTAAGTCAGCGATTAT	alt_3781_upstream	15	10	30	28	14	35	20	13	17	20
CGTACGGTATAGTCCC	alt_3781_upstream	4	1	5	3	1	2	1	3	4	0
AATTTAATTAATCCAT	alt_3781_upstream	56	42	69	65	43	55	45	60	50	45
CTGCTCAACTATCTTT	alt_3781_upstream	21	13	18	16	14	23	13	10	10	16
TTTCCCAGTAACTGAA	alt_3781_upstream	59	24	49	55	40	76	39	35	44	43
GTGGGTCTTACAGCAT	alt_3781_upstream	150	86	206	159	112	159	113	169	106	148
GTGATGCGAATAATTA	alt_3781_upstream	19	13	26	13	6	15	13	7	13	14
GCATCCTCGCAATAAT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTTCATGTCTACA	alt_3781_upstream	8	5	17	10	6	11	11	8	17	7
TCGTCGCTCCTGTTTG	alt_3781_upstream	25	26	32	40	28	25	22	31	28	28
TTTGTTTGAATGCTCG	alt_3781_upstream	67	48	77	48	43	78	44	70	41	47
ATTTTGGGTTACGGTA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
CACGCAAATGTCACCT	ref_3781_upstream	92	114	132	107	100	99	108	100	108	71
TTAAGGCTGATGCAAG	alt_3781_upstream	11	8	16	9	7	11	6	15	2	8
TTACTTGCATTCATCG	alt_3781_upstream	55	41	79	71	40	74	64	52	48	83
CGGGCTTACTCGGGAC	alt_3781_upstream	79	43	120	85	62	91	71	71	54	92
CAAACGTGTTATAATT	alt_3781_upstream	21	30	23	29	11	32	7	24	18	18
CATACTGGGTCTCCTG	alt_3781_upstream	0	1	5	2	0	1	4	2	0	1
TGTTTTGTTATTCGTT	alt_3781_upstream	505	334	605	570	375	463	369	471	364	505
CCTGTATTGGCGGGAA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
CACCAAGGCGCCGCGG	alt_3781_upstream	8	3	10	9	14	12	5	7	6	5
GCTACTATGCTCCTGT	alt_3781_upstream	38	25	62	53	33	47	30	48	39	36
TCAGGGGTCTCACGAG	alt_3781_upstream	15	12	25	19	7	23	16	22	15	18
AGTTTTGTTATTCGTT	alt_3781_upstream	0	0	0	1	0	0	0	0	0	0
TCACATTGTTCAGCAG	alt_3781_upstream	24	21	34	33	32	25	35	15	26	22
CTTGCGTTAAAAAATT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATTACTTGAGGTTATA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GGCCAAGGTTTACATT	alt_3781_upstream	124	95	150	171	81	141	93	145	84	119
AGACGGGCTTGGGGAC	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TGTACTGCATATTCAG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGGTTCGTCCCAT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGTACGTCGGAAG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGAAACGTTCTAG	alt_3781_upstream	18	15	22	15	12	16	8	9	12	16
ATAGGCCTTATTATCT	alt_3781_upstream	34	10	20	22	11	19	8	20	12	19
ACTTGAGTATTTTCGT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTGCTGGCCCTTA	alt_3781_upstream	47	19	37	64	23	33	17	45	24	36
GCACACCGCCCTCTGT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTCAGAACGTCCG	alt_3781_upstream	41	30	43	56	29	54	38	42	48	49
CTTGGTTAAGATTGCC	alt_3781_upstream	0	0	0	0	1	4	1	4	0	3
TTCTCTGCCGAGCCCC	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TTGGAAACTAATTGCC	alt_3781_upstream	11	17	16	16	15	12	7	9	9	5
CTTTAAAGCTAGTTAA	alt_3781_upstream	629	400	805	763	410	712	438	650	454	672
TATGCAATGCTCTGTT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTCGACTTACCCT	alt_3781_upstream	15	49	25	35	50	27	49	28	51	19
GTCAAGGTCCGCTGCC	alt_3781_upstream	25	12	32	18	18	28	11	18	15	20
CTTCAGCCGGCGACAC	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTCTCAGATGTC	alt_3781_upstream	23	17	26	31	21	22	14	21	16	23
ATAGATGCGATACTAC	alt_3781_upstream	8	13	8	7	6	11	7	3	3	9
GGTGACTTGTCATTTC	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGCTTCACATAT	alt_3781_upstream	103	75	134	136	60	112	81	97	75	100
TTCGAGTCAGCCCCAG	alt_3781_upstream	9	4	11	6	13	9	7	8	3	4
TTTGCATCATCTTTGG	alt_3781_upstream	41	36	77	46	33	54	38	48	41	36
TCCATGACAGTTAATG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTCCATTTCTACG	alt_3781_upstream	33	28	57	33	22	47	24	23	31	31
TATCTGGGGCGGAAAG	alt_3781_upstream	37	26	53	41	23	36	26	34	34	43
TACCGCAGTTATTGTG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTGCTTCGATTTG	alt_3781_upstream	21	18	37	35	15	14	23	22	17	21
CCCAAGTAGTTTTCAT	alt_3781_upstream	5	17	7	5	15	7	15	9	11	22
TCATTATTGGGGCAAA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
AGATCAGGGTAATCGA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCGATCCATTTA	alt_3781_upstream	65	25	64	60	40	54	41	55	38	50
ATTGCGCCGCCTGGGT	alt_3781_upstream	38	19	58	53	31	41	23	46	34	35
TCCTTGCATGTTGTTT	alt_3781_upstream	16	12	30	22	11	16	9	11	16	15
ATCAAGGGGGGCAGCG	alt_3781_upstream	25	37	57	34	21	28	24	33	15	25
CGAAGGGCACCCGTAT	ref_3781_upstream	18	29	30	23	33	20	36	17	29	18
ATGGTTCGTATTAGAG	alt_3781_upstream	58	38	74	52	35	49	44	42	48	42
TTTTATACGCTGTACT	alt_3781_upstream	17	11	25	31	19	22	13	21	18	17
GTGCATATAGTAGCAT	alt_3781_upstream	45	30	54	36	29	39	25	44	34	52
GATTGGGTTTTTGTTT	alt_3781_upstream	126	119	151	117	83	134	97	131	86	121
TTAGATCATCATGTGC	alt_3781_upstream	41	32	44	36	41	25	40	32	43	29
TAATTATTTCCGTGTT	alt_3781_upstream	40	14	47	46	23	24	13	30	18	41
GTTGTCACATCTCTCT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTTCGATGCAAGT	alt_3781_upstream	35	78	43	38	71	44	60	33	72	39
TTTGGGATTAGCTACA	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTAGGTCATAGAG	alt_3781_upstream	25	19	31	38	19	32	19	38	16	16
CGTCCTTGTCACTTGG	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAATTGACGGTTG	alt_3781_upstream	44	43	80	55	38	58	41	53	34	48
TGAGGTCCCGTGAACA	alt_3781_upstream	42	23	48	38	33	40	23	33	30	37
ACACACACTACGCAGC	alt_3781_upstream	42	40	43	40	55	40	40	36	55	38
CCGGTTGGGATTGCTT	alt_3781_upstream	0	0	0	0	0	0	0	0	0	0
TGTATGTTCTGTTATG	ref_3781_upstream	22	11	18	18	17	21	12	25	17	14
ATGCCGGGATTACGAC	ref_5755_new	0	0	0	0	0	0	0	0	0	0
TATTTTTCCAAGCTAT	ref_5755_new	0	0	0	0	0	0	0	0	0	0
CGATCAGACCCCTCTT	ref_5755_new	0	0	0	0	0	0	0	0	0	0
TGTCCTTGAGAGTGAC	ref_5755_new	82	120	77	75	123	78	117	78	134	63
GCAGAAAAACGCGAAA	ref_5755_new	27	42	41	35	46	24	55	40	68	30
CCACCGCAAATCCAAG	ref_5755_new	31	48	39	18	49	17	55	23	48	26
AGTTTGTGGGCTAGAT	ref_5755_new	9	11	9	22	16	7	22	8	34	13
TAGCAAATGATTCTTA	ref_5755_new	11	28	18	16	14	20	29	16	21	14
GTCGTCAACCTTGACT	ref_5755_new	36	61	35	34	59	29	77	26	54	22
GGTCTTGTGGGGTTAT	ref_5755_new	21	31	28	29	37	26	46	33	39	20
TGCACACTTAGTGGGC	ref_5755_new	0	0	0	0	0	0	0	0	0	0
TGCCGGCCAAAATTCC	alt_5755_new	12	13	7	15	15	15	21	7	17	14
GGATTGGTCTCAAGGT	ref_5755_new	0	0	0	0	0	0	0	0	0	0
CCCCGAGATGATCCTA	ref_5755_new	13	12	11	4	7	7	12	8	18	3
ACGCTTGCTCACTCTC	ref_5755_new	9	9	3	6	3	1	1	3	9	3
ACGGATCTCCGACCGT	ref_5755_new	0	1	1	1	0	1	1	1	1	0
GCTATGCGTATACTTC	ref_5755_new	29	42	33	31	54	25	64	17	55	26
AGTGACAACGTCGTTC	ref_5755_new	0	0	0	0	0	0	0	0	0	0
GGATTGGTCTTGAGGG	ref_5755_new	0	0	0	0	0	0	0	0	0	0
TCCGACATTTGGAGTA	ref_5755_new	0	0	0	0	0	0	0	0	0	0
AATGTTATGGACTGGC	alt_5755_new	3	3	4	2	3	6	2	3	5	1
AGACGCTACGATATAC	ref_5755_new	9	22	12	13	26	10	24	13	29	13
CGCCAATGTCATTTCT	ref_5755_new	92	137	102	89	153	79	156	78	164	81
GGAGTTGTCGATACTC	ref_5755_new	22	24	35	16	28	35	39	20	29	27
ATGTTGTCCAAGTCAA	ref_5755_new	0	0	0	0	0	0	0	0	0	0
CCTTAGGGCCCTAAGC	ref_5755_new	14	5	1	3	7	2	6	11	8	4
TTAGTTATATGCCTGT	ref_5755_new	20	24	22	23	21	17	34	23	21	15
AGTACTGTTTAAGACC	ref_5755_new	0	0	0	0	0	0	0	0	0	0
AGTAAACGCTCACATT	ref_5755_new	6	16	10	16	14	10	11	8	10	8
TTGAATGGCGTATGAA	ref_5755_new	22	22	21	17	18	16	20	15	30	20
TCGCATGCGGGTACAA	ref_5755_new	5	10	10	2	15	4	9	12	11	4
AGGGTACGTGTCTGAG	ref_5755_new	32	69	31	32	50	32	70	36	99	27
TCCAGGGATAACTCGC	ref_5755_new	6	3	5	3	8	3	7	5	8	2
CAGATCTGCCTGTGTT	ref_5755_new	62	111	74	55	123	72	113	54	109	45
ATTTGTTCCGCCCGTT	ref_5755_new	0	0	0	0	0	0	0	0	0	0
GGCCACACCTGGGGAA	ref_5755_new	0	0	0	0	0	0	0	0	0	0
GCTATAATCGGCATTA	ref_5755_new	46	56	63	51	77	44	61	41	72	42
TTTGTCTACCCTACTT	ref_5755_new	0	0	0	0	0	0	0	0	0	0
GCTGGCCCCCTTCGGT	ref_5755_new	28	51	34	23	36	30	40	24	50	26
CCGGGGGGCACTCCTC	ref_5755_new	86	125	89	87	126	79	106	64	139	71
CTACCCGGCACCCGTG	ref_5755_new	55	61	67	70	73	57	72	53	87	56
GATTAAGTCGGTTTAC	ref_5755_new	10	31	25	14	33	15	28	18	36	15
CTAACTTTTTACACAA	ref_5755_new	11	13	7	9	12	3	14	7	13	11
AACTCCACCTTCTTGT	ref_5755_new	38	90	56	46	85	28	113	36	68	26
CGTCCTTTATGGTCTA	ref_5755_new	0	0	0	0	0	0	0	0	0	0
CAAGCCGGCCGTTTCT	ref_5755_new	0	0	0	0	0	0	0	0	0	0
TTCATACCTTTGGGCG	ref_5755_new	17	41	15	15	33	24	49	18	58	16
AGTCCCCACGGTTACG	ref_5755_new	27	28	18	20	21	19	31	14	40	10
AAAGGATATAACGCTC	ref_5755_new	8	33	17	13	26	12	33	18	28	9
GTACAGGTTACGGGGG	ref_5755_new	22	44	35	38	38	42	38	25	50	23
GTAACATAAAGCCCGT	ref_5755_new	9	20	11	8	12	15	10	11	10	3
AAACTAAAATAATTTC	ref_5755_new	0	0	0	0	0	0	0	0	0	0
TTTGTTTTGGGAGGTG	ref_5755_new	7	20	15	4	13	10	8	6	15	5
TACTACTTATTGGTCT	ref_5755_new	7	25	12	9	25	16	23	13	22	11
TCATGCTTGTGTTTCT	ref_5755_new	40	66	32	36	81	39	76	32	65	32
AACTATGATGTGCACG	ref_5755_new	25	23	19	22	31	23	37	16	39	15
CTTCCCGGCTGGATGC	ref_5755_new	32	47	38	23	39	27	52	26	48	25
ACTCTAATGTTGCGTT	ref_5755_new	2	1	2	1	4	2	5	0	0	2
AGACGGGGTAAGTAAC	ref_5755_new	38	41	59	48	46	42	45	31	47	20
CATCTTGCCGACCCAC	ref_5755_new	0	0	0	0	0	0	0	0	0	0
CTTGCCAAAGGTTACC	ref_5755_new	13	36	27	17	30	13	28	19	22	11
TAATTTGTCAACCGGT	ref_5755_new	5	4	5	3	3	3	8	3	4	0
TAGTCATCCTGATTCG	alt_5755_new	0	0	0	0	0	0	0	0	0	0
CTTTGGCAGGCATAGG	ref_5755_new	31	47	34	30	43	30	65	36	55	34
GAACGAGTCGGCTACG	ref_854_fdr	14	35	22	28	38	16	31	15	35	14
GCCATTCGGTTGTCAT	ref_854_fdr	28	43	44	31	50	25	41	27	43	35
TACTGTTTAAATGCAG	ref_854_fdr	32	34	46	31	37	30	23	29	31	18
AAATCGAATTTGGCGC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTTCTGCTTAGG	ref_854_fdr	153	199	149	161	229	134	233	106	238	136
TGTAATCCCTAGCATT	ref_854_fdr	18	21	39	19	25	26	25	25	32	28
TAATGGGGAATCGGGT	ref_854_fdr	3	12	6	4	2	15	3	5	8	6
ACAATTCTCCCCTATC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTCGGGACCATTT	ref_854_fdr	67	77	84	87	78	69	98	82	98	74
GTTAGCGAGCGAAGGC	ref_854_fdr	10	8	8	16	10	7	8	6	13	8
ATCTCGGACGTGTGTA	ref_854_fdr	3	7	11	9	2	2	6	3	17	4
CAGTTTCTAATTGGTC	ref_854_fdr	16	19	27	17	16	19	20	15	20	13
CGGCGCCAACGTCGTT	ref_854_fdr	65	51	77	61	50	57	56	64	41	60
ATGCTAAAAGCCAAAT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TCATAGCTACTGTTCC	ref_854_fdr	7	9	7	13	9	7	5	4	14	7
AATTTAGACTCAAAGC	ref_854_fdr	42	34	37	38	44	29	29	33	48	20
TCTGGGTTTCTTTATG	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
CCGACTCTCGATTTTG	ref_854_fdr	47	63	62	65	64	54	60	84	59	48
AGTTGGGTCGTGTGCG	ref_854_fdr	24	24	22	28	15	26	29	28	31	11
TCGTAGCAGTTTGGCT	ref_854_fdr	10	14	18	9	17	14	16	14	13	7
TATGCCCACACCGTCC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCGTTATAGTTTC	alt_854_fdr	34	39	41	42	42	28	38	31	43	32
AACAAACGAGTAAGCG	alt_854_fdr	164	177	211	175	208	176	186	168	170	164
AGTTATTATGTGACCT	ref_854_fdr	51	58	59	59	55	61	53	54	58	54
CCTTGAATCACGTGTA	ref_854_fdr	17	23	21	22	29	24	38	30	30	20
ATGTGCTGCCTCGCCC	ref_854_fdr	12	10	14	15	12	14	19	14	18	12
CGCTAATGGCTTTGCC	ref_854_fdr	42	66	71	69	54	53	72	41	63	49
CTCGATTTGTTCATAT	ref_854_fdr	11	13	11	8	10	12	11	8	21	11
ATCACAGTATCAGCTC	alt_854_fdr	26	29	20	13	24	14	39	18	32	15
TTGCTGACTAACTTGT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
ATTGGCTTCTAAATTG	ref_854_fdr	27	25	24	17	20	30	19	14	23	24
GTTACGATTCTATGCT	ref_854_fdr	39	41	44	33	47	31	41	34	42	29
TTCGCACACGGAGAAC	ref_854_fdr	17	29	24	18	24	14	21	12	28	23
CTTGGTCATTCTCCTA	ref_854_fdr	64	74	76	71	59	62	65	46	63	62
GGGAGTGATAGTGCAA	alt_854_fdr	91	124	104	94	133	75	150	98	139	73
GAACGATGTCTGGTTT	ref_854_fdr	31	23	32	23	31	27	34	20	29	30
ACGACCGTGTAATGAC	ref_854_fdr	10	11	9	10	16	11	11	5	4	9
CGGGTAGCCTCCACAT	ref_854_fdr	12	12	11	16	11	9	16	18	19	15
TGGCAGTCGCTTTTCT	ref_854_fdr	153	141	184	151	125	150	133	126	131	123
AGCCATCGTTTCAGAC	ref_854_fdr	14	19	20	10	18	16	20	27	20	10
CCGTCTGTGAGCGGGC	ref_854_fdr	18	37	19	15	27	10	29	15	34	9
CGGTTGCTGAATGCTC	ref_854_fdr	52	47	49	38	38	39	42	43	55	29
CCAGGATTAACGAGGC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
CAACACCTGGTGTCCA	ref_854_fdr	36	45	42	28	38	25	43	24	50	31
CAGCCTTAAGGAGGCT	ref_854_fdr	0	10	5	7	15	5	21	0	14	0
CCTTCGCGGGGCGGTA	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TCACGTCCGACGCATG	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
GTATCTTATCGTCTAG	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAACTCCTGGCTC	ref_854_fdr	62	49	57	43	52	49	54	64	74	51
CCATAAGCCACACGTA	ref_854_fdr	29	62	41	39	52	26	61	22	53	25
TCCTTTAGCCTGGTCA	ref_854_fdr	10	9	9	2	6	6	15	10	4	9
AAGCTTTTACTCCCCC	ref_854_fdr	2	19	6	5	24	3	27	8	28	3
GATTGATTCTGACTGT	ref_854_fdr	23	18	27	9	28	19	26	10	12	14
GTTCCCAGGGCTACGT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
GGTTGTCATGAACCCT	ref_854_fdr	37	30	47	38	57	43	47	44	43	40
CGTGGCAGAGAGCCCC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
AATTCGAGTACTCCAT	ref_854_fdr	7	12	21	12	12	20	8	14	7	21
TTTCGTCGTTACGGCG	ref_854_fdr	0	2	3	0	0	0	0	2	0	1
TCAAACAGAGCTATAG	ref_854_fdr	26	15	20	16	24	20	26	15	32	10
CCCTGATAGATAACCG	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
GGGATGTGCTCGCTTT	ref_854_fdr	2	3	2	2	2	0	2	1	1	2
GGGACCGAATTCTTGT	ref_854_fdr	3	5	11	15	4	5	4	5	15	9
CACTGATTGTCCTCAG	ref_854_fdr	16	19	25	17	19	18	18	17	21	12
TTGTAACTCAACAAAG	ref_854_fdr	25	23	34	32	28	22	31	20	34	23
ATCGAATACAAGTTGC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TAAAACATCAGAATCC	ref_854_fdr	50	41	57	41	36	52	48	41	48	49
GACGCTATCTTTGAGT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TCTCACACTATTCTAT	ref_854_fdr	88	103	83	68	83	79	97	85	105	76
GAGTGTCATCGGACCA	ref_854_fdr	8	18	13	19	19	12	22	12	13	8
CCCTTTCGTTGCATAG	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TTGGACGCTTCTGTTG	alt_854_fdr	7	16	21	6	14	9	15	12	6	15
TGGTATAGTTTCAAGT	ref_854_fdr	28	18	29	23	17	30	22	17	32	23
AATGAATCTTCACGTC	ref_854_fdr	9	10	8	12	2	9	8	8	4	3
CATCGAAATCTTTGCT	ref_854_fdr	48	42	44	28	42	52	46	41	35	44
ACTCGTTTGTGGAGAT	ref_854_fdr	38	43	47	43	33	43	60	45	39	38
CATCGGTAGTTCCTTC	ref_854_fdr	116	106	153	105	112	115	147	83	103	97
CTTTGTTACGGTAACT	ref_854_fdr	15	19	13	11	22	17	18	20	20	16
CAGTGTTAAATAGGGC	ref_854_fdr	89	93	111	104	82	91	74	109	117	92
AAGCGTCAACCTTCGC	ref_854_fdr	120	96	140	102	116	92	93	97	99	103
TTCGATCAATTGGGTA	ref_854_fdr	8	5	8	12	11	16	8	5	6	7
TATTGAAGGATACCGC	ref_854_fdr	58	60	83	51	70	65	72	54	69	59
GATTCTGGCATGACAG	ref_854_fdr	1	0	1	1	5	5	1	2	1	0
TATTTTCGTAGGTGTT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGGCGGCCGCTA	ref_854_fdr	7	6	9	5	9	5	11	4	11	8
TGGTATTTCATTCTAG	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
CTTTATCACAGTGTCT	ref_854_fdr	22	23	28	22	29	22	42	21	37	17
GACTCCCGTGTATAGA	ref_854_fdr	32	40	18	17	57	26	48	21	57	15
ATTATGCTACCCACTT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
GGATGCCTGGTCAAGC	ref_854_fdr	87	84	116	102	126	80	80	86	124	83
TCGTACGGTAGTATAC	ref_854_fdr	25	43	44	55	51	36	58	45	54	38
GTTTAGTCGCCTCCGA	ref_854_fdr	4	4	4	3	8	7	6	2	5	5
CTGCGATACGGGGCCA	ref_854_fdr	331	340	348	332	300	291	293	296	297	306
GTATTCCTCCGTTTGT	ref_854_fdr	18	20	6	12	16	8	20	7	14	4
ACGTTACTACGCGACC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTCGGTCGGGCG	ref_854_fdr	8	14	13	12	8	14	10	5	16	8
ATGGGTTAGTTTACCG	ref_854_fdr	1	2	7	0	4	4	4	0	1	2
GCGACTCTGAGTACGT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTGTCTAGGTGTT	ref_854_fdr	6	13	15	6	22	7	12	15	17	14
TGCGGATGCTAATAGC	ref_854_fdr	21	15	19	15	17	17	12	15	20	17
GATGTGAAAGAGTCGT	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
TAGAACCTTTCTAAGG	ref_854_fdr	8	10	12	8	7	10	13	4	15	6
GCCAACTGTTGTACTA	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
ATCACCGGGCTGCCAC	ref_854_fdr	39	46	42	51	48	32	42	35	53	26
CCCCATGACCGCTTCT	ref_854_fdr	28	25	38	35	24	41	25	20	35	30
TTTCGGTGTGCTTAAT	ref_854_fdr	5	10	8	7	7	4	12	3	6	5
CCTTACTTTGTGCTCC	ref_854_fdr	73	75	74	79	75	57	98	58	109	72
CAGCGATACGGGGCCA	ref_854_fdr	0	0	1	0	0	0	0	0	0	0
GAGGGGGACTCCTCTT	ref_854_fdr	27	39	41	34	31	44	42	39	40	31
CCATTCTGCCCAAATG	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCCGTATGGTTCA	ref_854_fdr	44	54	74	55	57	71	57	54	76	53
ACGGTGCAATCGGCAC	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGAGTACCGATCA	ref_854_fdr	0	0	0	0	0	0	0	0	0	0
GATCTATCGGGATATA	alt_1093_upstream	4	12	1	3	6	3	12	2	8	6
GATGATTCTTCCGGGT	alt_1093_upstream	16	16	18	17	15	14	26	9	21	16
AAAGTATTCGCGTGCA	alt_1093_upstream	9	23	14	8	20	14	29	13	22	18
AAGGCCCGGGGGACCT	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
AAACCGGAGGTACGTA	alt_1093_upstream	214	300	244	239	344	224	352	179	342	177
GCATTATAGTGCTATC	alt_1093_upstream	4	21	8	11	14	11	18	10	20	9
TCCTTTTTAGTCTCAC	alt_1093_upstream	7	30	5	6	18	5	25	14	25	8
AGAATATACTTGTTTC	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
AACTGTTGACAAGCGA	alt_1093_upstream	13	25	15	13	23	16	25	12	22	13
TTTGGGGTCGACCAGG	alt_1093_upstream	45	89	58	38	97	42	88	42	96	37
TTTAATTAGGGCTAAC	alt_1093_upstream	167	299	210	190	304	158	329	208	309	161
CCGTATTTGTATGGGC	alt_1093_upstream	13	29	11	19	30	12	20	10	30	12
TCCTGGAATTCACTGT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
AACTATTGGCAAAGTC	alt_1093_upstream	1	10	8	4	4	7	8	4	11	5
TCGTCTTACATAGAAA	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
TACGCGGTTCCCTAAC	alt_1093_upstream	18	32	28	26	34	14	40	36	47	20
TTTGACTTTGCTTCGA	alt_1093_upstream	8	9	5	4	8	6	7	3	11	3
TGCTTGAAGCAGCGTA	alt_1093_upstream	6	5	4	5	14	12	8	5	5	2
ACAATCGGTTCGCTGA	alt_1093_upstream	4	6	3	3	11	3	12	5	9	5
CCTTCTTCGGATGCTA	alt_1093_upstream	26	59	38	30	68	26	65	18	62	22
GAACTTATTGTGTATT	alt_1093_upstream	7	32	21	18	28	9	36	10	24	9
TCAATCGCTATTTCAA	alt_1093_upstream	0	1	0	1	0	0	2	0	1	2
CCTTTACGTCTCCCTT	alt_1093_upstream	19	79	23	13	101	18	99	21	93	11
TCTCAGCATATACATT	alt_1093_upstream	12	44	19	12	36	17	46	11	37	10
GTGTAACGCTTGCCGA	alt_1093_upstream	65	114	65	46	96	63	119	50	139	53
CTCTAAGGTTATATGG	alt_1093_upstream	66	100	100	60	130	69	107	53	110	41
CGAGATTGCGGGTACA	alt_1093_upstream	6	8	8	9	15	5	15	5	10	4
ATTTTTAGATGTCGCG	alt_1093_upstream	4	3	5	2	5	3	8	0	3	3
GAGAATTGTCCAATCA	alt_1093_upstream	12	9	17	5	7	8	10	7	15	6
AGGGCAATCCTGTCTC	alt_1093_upstream	21	34	24	24	49	20	52	17	50	31
GCCCACGGAAATTGTG	alt_1093_upstream	99	195	125	111	241	94	206	96	196	71
CGCTTATCCGTAAATC	alt_1093_upstream	4	7	5	3	15	4	16	4	10	4
ATTCCAAGTCATGGTG	alt_1093_upstream	45	87	49	59	89	38	86	46	97	44
GCAATTTCGTTTTCAG	alt_1093_upstream	94	155	118	86	163	77	185	86	167	78
TTGGGTGGGAGCGTCC	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GCATTTTCGTATGACC	alt_1093_upstream	1	0	2	2	3	2	2	0	1	0
AGAACGCTTTGGACGG	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
AAACCTTTGTACACTG	alt_1093_upstream	28	104	33	23	98	27	98	31	87	20
TAATAGTTGTATGTCT	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
ATTATCAGTCGCCGAA	alt_1093_upstream	0	3	1	1	0	1	0	2	1	0
ATGGATTGAATTTTGT	alt_1093_upstream	27	53	28	38	53	42	42	27	60	27
CCAATGCAGCGGTCGC	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
TGACTGACCTTGGTCA	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GCCCAACCCAACTGTT	alt_1093_upstream	10	52	5	8	59	6	58	4	65	6
TCTGGTCTAATTAAGT	alt_1093_upstream	111	216	118	79	211	104	193	111	233	100
TATTTATCACTCAGTG	alt_1093_upstream	7	12	8	7	17	11	17	8	22	7
TTATGTACCACTGAAC	alt_1093_upstream	0	2	0	1	3	0	2	2	3	1
CAGCCAGATTATTGTG	alt_1093_upstream	14	46	6	14	35	13	32	6	31	16
CTGTATTAACATGCGT	alt_1093_upstream	60	78	54	32	74	55	102	49	105	57
CGTATAGGCAATTTCC	alt_1093_upstream	19	31	21	18	29	9	39	15	26	19
GTAAACCCTCTTTGTG	alt_1093_upstream	69	104	77	75	100	48	112	46	124	55
ACAACGAAATTGCCGC	alt_1093_upstream	4	7	2	2	1	4	3	8	8	4
TTGAGGGGGATTGATA	alt_1093_upstream	4	21	15	6	32	15	27	9	31	10
ATTGCTTAGTACGTAA	ref_1093_upstream	1	7	0	6	0	1	6	0	4	3
GCTTGTGGCCCACCCA	alt_1093_upstream	48	61	36	63	107	27	82	36	94	41
AACTACATTTGCTTGC	alt_1093_upstream	2	4	1	0	7	1	9	0	6	2
GCGAAACGAAGCCCAA	alt_1093_upstream	20	40	36	22	39	24	38	17	42	21
ATGACCCTCTATACTT	alt_1093_upstream	71	119	54	84	105	52	111	67	70	44
CCCACAAACGTCGATT	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGGAGGGACACTT	alt_1093_upstream	8	17	10	10	22	12	15	5	22	15
TACGGCGATTGTCGGT	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GCAATATGCCAGACTG	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GAACGGAAATAGCAAC	alt_1093_upstream	38	53	37	38	56	41	53	27	66	23
AGTTCTGATGTCCAGG	alt_1093_upstream	1	1	2	0	2	0	0	0	0	1
TAACTCGCCCCCTATG	alt_1093_upstream	16	30	12	14	22	11	20	7	17	5
ACTGATCGGTTTATCG	alt_1093_upstream	5	10	6	1	2	3	15	3	15	2
ATCCAAATCTCTGGTG	alt_1093_upstream	0	4	3	4	7	0	3	4	5	4
TATTTTGAGTTAACCG	alt_1093_upstream	7	17	10	13	25	9	25	11	24	13
TTTTGTCTGCCGCTCC	alt_1093_upstream	73	143	100	94	173	83	163	79	184	77
CTGTATGCTCACAATT	alt_1093_upstream	26	37	24	26	47	21	33	24	50	19
AGCTTCGTAACGTAAT	alt_1093_upstream	7	16	11	12	9	7	17	8	18	9
GTTACTTAGAAGGCTC	alt_1093_upstream	4	13	12	15	16	10	18	11	17	12
GCCAGTGGTTCAATCA	alt_1093_upstream	17	53	27	12	40	18	61	27	58	18
GTCTAGTTTGCGCGTG	alt_1093_upstream	24	59	47	29	64	32	61	31	70	25
TGTGCACATGAGTGGG	alt_1093_upstream	0	1	0	0	0	0	1	0	0	0
GATACCTGTGTTCAGT	alt_1093_upstream	20	43	28	26	42	12	41	22	59	20
CTGGTCCCCTAGTTGC	alt_1093_upstream	16	22	5	15	30	14	18	11	13	9
ATATACAGCCGACCGG	alt_1093_upstream	6	14	8	7	11	5	12	6	11	2
GTGCCCGCTTGTTCCT	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
ACGACGAGCAATGAAT	alt_1093_upstream	41	84	46	45	75	48	81	50	70	48
GATATCAGGGACAAAT	alt_1093_upstream	8	22	15	19	18	11	22	15	19	11
ATTGTCACTACGCTCC	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
AGATTAATCAATGAAC	alt_1093_upstream	31	53	24	26	70	25	60	28	68	19
AGGTGCAATCTATGCT	alt_1093_upstream	7	14	6	3	13	2	19	5	14	2
TACGTATGTTGTGGAA	alt_1093_upstream	10	36	16	14	34	17	30	13	24	10
GTGGCTGCTTACTTGT	alt_1093_upstream	9	15	6	11	17	5	24	6	18	8
ACCACAGGGACCGCGC	alt_1093_upstream	5	19	5	5	28	1	20	9	23	3
TTCGCTTTGTATAGGA	alt_1093_upstream	33	70	41	45	65	51	67	45	71	24
TAGCGGGTAAATATCC	alt_1093_upstream	44	65	49	43	86	28	63	30	56	34
AAGTGGTTAAGGCTAG	alt_1093_upstream	8	16	13	13	19	8	15	8	16	8
ATCGTGTTGCTAAGCC	alt_1093_upstream	27	43	26	30	48	23	36	23	48	14
TGCAGAATTCCAATGT	alt_1093_upstream	94	159	106	127	171	105	200	102	208	99
TCTCAAGGATAACGGT	alt_1093_upstream	10	13	4	6	12	11	17	3	16	8
GTTTTGGAGGAATTGC	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCGGACGACGACA	alt_1093_upstream	22	59	34	24	54	41	48	34	46	17
TAGTGCTTTCTTCCAC	alt_1093_upstream	12	20	15	16	27	9	17	10	23	8
GTGTCCGTATTCTTAT	alt_1093_upstream	6	16	16	5	13	12	18	9	16	10
TACTGGTCTTTGTGTC	alt_1093_upstream	2	6	2	3	4	5	5	2	11	1
TAGTAGGGACCTACTC	alt_1093_upstream	9	14	8	5	14	7	19	9	12	1
CATTTCGTTCAAAAAA	alt_1093_upstream	36	61	35	52	59	26	51	28	60	38
ACTGCCTTCCCTTCTG	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GGAACCGTCTTGACTC	alt_1093_upstream	19	37	26	16	37	20	38	6	34	14
GCGCGTTTTTGCCCAG	alt_1093_upstream	11	28	33	16	19	19	27	14	23	11
AATGACTTTTATGGTC	alt_1093_upstream	4	17	2	3	3	6	4	8	10	4
GGCAAGGGGTGAGCAG	alt_1093_upstream	37	71	47	42	48	32	51	27	62	33
CGGGAGTTCTTTTGTT	alt_1093_upstream	60	110	98	65	129	60	127	55	156	57
TCACATCACTTCGCAC	alt_1093_upstream	0	3	8	2	6	2	5	1	2	0
TCACACGAACTTGTGA	alt_1093_upstream	41	72	36	36	102	30	97	29	108	28
TCATTTTGCGTCCAAA	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAAGCGCGGAATG	alt_1093_upstream	157	269	205	167	299	163	352	158	324	150
GTCAATGGGCTCGTCA	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
ACCCAGACGTCGTCTC	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GCGATTTCGTTTTCAG	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
TATTGATCTTGATTAG	alt_1093_upstream	13	11	6	4	15	9	15	6	14	1
GTTGATTTAAGACATT	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTATAGAGGCTTG	alt_1093_upstream	0	0	0	0	0	0	0	0	0	0
GATTTCAGAGCTCTAA	alt_1093_upstream	22	51	42	27	44	33	52	30	50	31
GTTTTCTTGGGTATTC	alt_1093_upstream	40	63	37	43	71	38	64	25	81	35
GACCGATTTAAAACGG	alt_1093_upstream	6	6	2	5	2	1	3	2	2	2
CTGTCGAACTGGCGCG	ref_1093_upstream	62	151	98	52	144	80	125	66	140	75
TTTACAATTGGACAGC	alt_1093_upstream	13	20	14	13	17	12	27	5	38	14
GAAACTGCTTTGTTTT	alt_1093_upstream	3	8	7	2	7	11	11	5	10	4
ACGTCAGCTTAGAACT	alt_6025_new	19	42	29	18	33	14	39	14	48	14
CTCTCCGTCCTGATTG	alt_6025_new	0	0	0	0	0	0	0	0	0	0
GTGCTCGCGATCTGAT	alt_6025_new	0	0	0	0	0	0	0	0	0	0
TCTAGCGATTTGTGGT	alt_6025_new	0	0	0	0	0	0	0	0	0	0
ATGACTCTCTCTAAAG	alt_6025_new	31	42	43	31	40	31	38	21	50	28
ATAAGTGTTTAGGTCA	alt_6025_new	0	0	0	0	0	0	0	0	0	0
AGAGAAATCGTGCCCG	ref_6025_new	94	93	125	114	124	107	122	77	148	95
ATTTCTGTACCCTGTC	alt_6025_new	25	33	28	17	23	28	41	20	28	25
GTAAAGGGTCACGCAC	alt_6025_new	0	0	0	0	0	0	0	0	0	0
GTGATTGCGTGTTTAG	alt_6025_new	53	63	42	42	60	36	52	37	83	29
TCCTCGTATCATTGGT	alt_6025_new	21	39	23	24	43	16	39	17	36	18
TTTCTGAGCGGTTGAT	alt_6025_new	21	23	20	13	36	11	35	14	18	8
ATCTGCCGCAACTGGC	alt_6025_new	61	106	110	88	131	81	119	94	117	78
TTCATGCCGCACATTG	alt_6025_new	3	4	7	5	1	5	2	2	1	0
TACAAATGTGTCTCGG	alt_6025_new	272	306	296	235	312	229	318	205	373	268
CTAATGCGTTCGCCGG	alt_6025_new	7	20	15	9	22	19	10	17	30	14
AGTTTTGAAAGGATGT	alt_6025_new	14	20	23	9	34	14	32	8	32	15
ACCGCCGCTTGCGAAA	alt_6025_new	7	14	3	8	9	6	9	12	18	2
ATTATTCTCGTCTGGC	alt_6025_new	0	0	0	0	0	0	0	0	0	0
CTCTCGCGGCAGTTGG	alt_6025_new	5	11	3	6	13	8	14	5	9	7
ATGTCTATCGCGTTCT	alt_6025_new	10	15	7	8	15	10	9	6	13	10
GTCTTAAGGATTCAGT	alt_6025_new	3	16	8	11	8	11	12	8	18	7
GCCGGTTTGGGCTGTC	alt_6025_new	16	43	20	16	46	8	40	9	34	12
TTGGCAACAGGCAGTG	alt_6025_new	29	45	38	16	38	20	44	25	30	33
TGTAAAATATCTCTTT	alt_6025_new	77	112	95	87	91	82	108	62	129	67
AAGGTTGGACTCAAAC	alt_6025_new	10	11	8	1	8	6	8	6	4	3
TGATATCTGGGGTTTG	alt_6025_new	54	59	51	46	43	52	69	41	68	33
GGATATTAATGCGGTT	alt_6025_new	0	0	0	0	0	0	0	0	0	0
ACTAACTTGCAAGGTC	alt_6025_new	41	61	42	31	45	32	74	34	55	31
TGGACTGTAAAAAGCC	alt_6025_new	101	130	111	83	120	94	139	91	154	98
CCAATCCTTCCGCCAC	alt_6025_new	24	73	37	31	62	22	55	35	74	24
GCTTTTGTGCCCTTTA	alt_6025_new	37	51	46	35	42	31	52	32	35	35
GCGTTCGTCACCCGAG	alt_6025_new	8	16	7	10	17	10	16	12	12	10
CGATATATAAGTCATC	alt_6025_new	56	69	69	56	95	63	88	48	102	51
TTTCGAGATAGTTCTC	alt_6025_new	1	2	3	4	2	2	3	0	6	0
GCTCGCAACGCTCGCC	alt_6025_new	39	61	60	27	62	33	65	35	47	31
CAACCTTCCTTCGTCG	alt_6025_new	1	29	12	6	25	4	14	2	30	8
CTTTGGGTGCTTTCGC	alt_6025_new	17	29	16	18	29	12	29	12	30	20
GGTAATCACAACTGAA	alt_6025_new	37	50	31	39	59	46	63	36	64	33
TATCGTCGGACGCCCT	alt_6025_new	12	10	7	13	20	10	16	6	16	9
GGTGAAACATGCGCCC	ref_6025_new	119	141	128	101	176	105	157	79	148	91
TGGTTGATGATTATGA	alt_6025_new	67	63	73	54	58	41	68	39	66	53
AGGCGGCAATCCTGTG	alt_6025_new	0	0	0	0	0	0	0	0	0	0
GTCAAACTTGTCGGGG	alt_6025_new	3	4	4	5	3	4	6	5	5	1
TGTGCACCGTGTTTTG	alt_6025_new	10	13	5	6	18	10	8	1	6	3
GTGACCTAATCGTTCT	alt_6025_new	0	0	0	0	0	0	0	0	0	0
TACTGGCTGGGACATT	alt_6025_new	35	60	54	51	73	36	65	31	58	31
GCAACCCTTTACTGTT	alt_6025_new	28	37	28	24	22	22	22	14	42	24
ATTCTTGCGTTGGTAC	alt_6025_new	16	25	18	7	16	15	16	9	18	17
AAATTGGCCTCATGTA	alt_6025_new	6	14	12	7	21	8	7	8	14	7
TATGGCCATTCTTGGG	alt_6025_new	14	20	25	14	25	17	35	28	19	14
TGTGCACCGTGTTTGG	alt_6025_new	38	86	45	52	66	46	73	48	79	37
ACAATCCATTTGTTTC	alt_6025_new	25	28	17	18	26	11	20	18	24	19
TTGTGGCTTCAGTCAT	alt_6025_new	161	223	185	159	230	148	212	178	263	155
GCGTTCCGAATCGATA	alt_6025_new	66	91	80	48	110	54	102	49	114	54
GTCGGGAATGTACATG	alt_6025_new	25	28	23	18	33	31	40	23	27	19
ACGCTACAGGTGTTCG	alt_6025_new	0	0	0	0	0	0	0	0	0	0
ATTTACCTCTAAAGGA	alt_6025_new	0	0	0	0	0	0	0	0	0	0
CGCCCCTCCTCGATGT	alt_6025_new	14	16	15	7	8	11	8	8	11	18
AACTTCTCTTGATATG	alt_6025_new	27	43	22	27	38	24	37	32	28	25
GTCCATAGTAGTACTG	alt_6025_new	7	8	7	5	9	6	6	7	6	2
TATCTAAGTTCAAATT	alt_6025_new	5	7	17	12	13	14	7	13	11	7
TTGATCCTATAAGCTG	alt_6025_new	64	117	118	70	97	75	119	63	125	54
ATGATATGTATGCTGA	alt_6025_new	53	65	68	64	90	49	65	44	73	46
TACGCTTTTGCACACT	alt_6025_new	174	254	193	168	251	144	282	143	303	157
ATAGTCTTCTCTACAA	alt_6025_new	29	30	31	29	51	19	52	30	31	22
GGTCACCCCCAATTCG	alt_6025_new	41	40	42	51	72	50	51	39	60	28
GTGCATACCAGCAGGG	alt_6025_new	0	0	0	0	0	0	0	0	0	0
GAAGATTACTTTACTT	alt_6025_new	4	11	14	9	11	8	13	5	10	8
TAGCAACTGATGTAAT	alt_6025_new	17	10	18	14	27	8	21	12	10	16
AGCCGGGGCCCCTTGT	alt_6025_new	15	25	27	18	29	16	38	15	43	27
CATATCATTCCCCTTA	alt_6025_new	24	46	33	24	65	20	42	30	38	32
GCTTTCCACTGGGGGG	alt_6025_new	0	0	0	0	0	0	0	0	0	0
GCTCGAACGCCAGATA	alt_6025_new	59	120	82	58	95	68	98	46	108	37
GGAACACTTTGCGGAT	alt_6025_new	10	11	12	9	16	5	19	13	17	12
GTGCCGGGTAGCAAAG	alt_6025_new	77	117	85	91	123	89	111	73	132	80
TAGATCTCTCCTCTAC	alt_6025_new	16	36	29	30	39	16	30	13	25	17
TATCCGATCGCCGTCG	alt_6025_new	11	41	38	24	68	11	52	25	52	19
TTAACTCCTCCCGCCG	alt_6025_new	7	13	8	5	21	2	13	9	17	1
GTTTTGGGGTATTCAA	alt_6025_new	16	24	23	18	33	26	23	22	28	13
TTATTAGCTTACCAAC	alt_6025_new	0	0	0	0	0	0	0	0	0	0
TGACGTGATCTTGGAA	alt_6025_new	16	18	15	18	12	19	19	22	29	23
TTCTCTCCAAGTAACT	alt_6025_new	26	28	44	38	35	33	43	24	59	30
AGTGATTGGTGGGTAA	alt_6025_new	13	25	13	11	17	7	24	5	28	15
TGTCTACATTGTCTCA	alt_6025_new	0	0	0	0	0	0	0	0	0	0
TGCATTCTCAAAATAT	alt_6025_new	20	30	42	21	30	28	36	40	16	25
TACACGATCCCAATCT	alt_6025_new	19	24	31	28	35	9	26	18	31	23
TGGGCTGTCTGTCCAA	alt_6025_new	9	15	11	9	10	11	10	9	12	2
TAAACGGCGTAACAGC	alt_6025_new	2	21	16	9	10	12	12	7	11	10
TGTGCTGATTGTAAAC	alt_6025_new	16	29	30	18	17	16	42	19	40	15
GTATTCTGCGGTTTTC	alt_6025_new	89	171	118	71	132	82	145	71	177	74
TTTGGTCATCAGCCTG	alt_6025_new	0	0	0	0	0	0	0	0	0	0
GGTGTCAATCCTTAGA	alt_6025_new	0	0	0	0	0	0	0	0	0	0
ATCTATTCGCAGGCGT	alt_6025_new	9	14	8	4	13	13	21	10	13	5
GTCGCCATTCAGAGTT	alt_6025_new	0	4	1	0	1	0	3	2	0	0
CTATGTTACGTTCCAA	alt_6025_new	41	89	62	45	78	50	77	44	76	45
GTGTTTTAAAAGCCAT	alt_6025_new	15	34	22	20	40	23	26	27	43	22
ATACTGTCTATGCTTG	alt_6025_new	22	31	33	14	33	19	27	15	28	18
TAAAGCCAGAATCCGC	alt_6025_new	0	0	0	0	0	0	0	0	0	0
CGCGGGTCCCTATGCC	alt_6025_new	0	0	0	0	0	0	0	0	0	0
TTGTTGAACTGTAGAT	alt_5770_new	14	21	17	10	15	11	20	6	20	12
TTAGTCTTCGCTTTAA	ref_5770_new	33	34	34	38	52	43	39	34	55	34
GTACCTCGCGCTGCGG	alt_5770_new	0	3	1	0	1	0	4	0	2	0
CTTACTACATTGGGGA	alt_5770_new	11	18	10	10	11	8	15	15	14	6
CTTGCAGGATTGCCCA	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TAAATTTTGGCTTACG	alt_5770_new	44	61	72	49	65	49	81	55	98	44
AAGGGGACGGTTGACG	alt_5770_new	0	0	0	0	0	0	0	0	0	0
AACCAATTCCACTTGC	alt_5770_new	142	224	140	125	184	125	237	113	217	102
TATTCGTCCGAACACG	alt_5770_new	9	8	11	11	7	8	14	7	9	5
ATTCCTCGTACAAGCT	alt_5770_new	37	52	61	53	71	50	59	48	65	60
GATTCCTATTAAGACT	alt_5770_new	0	0	0	0	0	0	0	0	0	0
CACTACACTTAGTACC	alt_5770_new	56	68	50	41	67	50	69	63	68	49
GCGTTTGCAAACCAGC	alt_5770_new	33	38	24	22	34	21	48	29	43	36
GCTTCTATTCTCGCGC	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TCCAATGTGCGATGAT	alt_5770_new	3	5	6	2	10	4	8	8	9	2
AGATACGCGTCCAGGG	alt_5770_new	30	50	43	33	36	34	38	23	39	27
TCCCATAGTGGGACAT	alt_5770_new	5	16	11	4	8	8	13	1	10	4
CGTCATAGTTTGAGGA	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TCGATATGGGTAATAT	alt_5770_new	4	3	9	6	1	6	4	2	10	3
TCTGCGTGGCAACAGG	alt_5770_new	140	226	177	172	196	127	234	153	220	126
ACCCCGTTGGGCTATT	alt_5770_new	0	0	0	0	0	0	0	0	0	0
CAACTGTCGTATACCA	alt_5770_new	100	202	143	113	204	134	190	97	214	94
TTCCTTGTTCCCTCAC	alt_5770_new	4	7	0	5	4	4	8	9	4	4
TCATAGTGAGCTCTGG	alt_5770_new	43	51	44	36	48	31	43	43	61	37
CCCTGTATCACCTTCC	alt_5770_new	18	24	27	19	27	20	30	10	20	20
GAATCGAAAGCTTCTC	alt_5770_new	36	40	59	32	42	42	41	38	50	50
TGCTCTTATGATTGTG	alt_5770_new	207	332	239	215	360	211	338	214	361	189
GTTTCTGACCAGTACC	alt_5770_new	0	0	0	0	0	0	0	0	0	0
CTGTTGAGTTATCGCT	alt_5770_new	47	45	66	42	66	45	67	39	68	30
CACGCCGCTCCAAGAA	alt_5770_new	5	17	10	3	10	5	22	7	20	14
TGTACTTGTGTCTTTT	alt_5770_new	48	58	59	45	54	40	61	37	57	37
GCTCACGTCTGGTGTG	alt_5770_new	0	0	0	0	0	0	0	0	0	0
GTCGCATGGCTATGTG	alt_5770_new	0	0	0	0	0	0	0	0	0	0
CCACCTGCGTCACCTG	alt_5770_new	11	20	17	15	12	10	15	9	14	6
TGTCTTCTTCATATTC	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TCGAGTCTGAAGAATG	alt_5770_new	9	9	10	12	5	2	6	4	8	6
ATTTACCGTCCCCCCC	alt_5770_new	52	72	77	70	74	46	64	39	77	40
AGTTGATCCTACGGTT	alt_5770_new	98	137	120	99	132	104	143	85	139	73
TTTAATCTTTTTATAT	alt_5770_new	22	27	30	17	21	26	35	20	28	17
CCTGCTTTCACATATT	alt_5770_new	0	0	0	0	0	0	0	0	0	0
CGCTGTGGGAGGCACG	alt_5770_new	14	8	19	14	9	11	9	8	13	8
AGGGGTATAGGGTATT	alt_5770_new	24	36	36	26	30	16	23	25	32	13
GCGGTCTGGCGGTTTT	alt_5770_new	27	55	38	32	45	34	65	21	40	31
AGCGTAGGAACCCGTC	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TGAGTAGGTCCGGATA	alt_5770_new	16	32	24	23	50	22	35	33	39	19
TTTCGTGCCAGTGCTG	alt_5770_new	62	90	75	73	81	79	120	64	111	65
TAGGTGGTGAACGGGT	alt_5770_new	53	85	58	40	79	43	77	42	103	46
GTGTAGTACCGACCTG	alt_5770_new	6	6	7	1	6	4	9	2	4	5
GCCACTGGACCCTCTG	alt_5770_new	0	0	0	0	0	0	0	0	0	0
GGCTTCTCTTTGAATC	alt_5770_new	0	4	0	1	0	0	3	1	0	1
TCTTTACAATCTTTGC	alt_5770_new	0	0	0	0	0	0	0	0	0	0
GTGGACACCACCCTTT	alt_5770_new	2	1	2	1	2	2	1	1	2	2
TTACATTCGGGAACCT	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TTTTAGTGCGACTTGG	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TTAGTGATGCGTCATG	alt_5770_new	31	40	30	25	30	12	21	16	30	24
CCACCTTGTCATTCCG	alt_5770_new	81	138	117	87	137	84	151	80	184	71
GCCTTGCGAGATATAG	alt_5770_new	7	16	5	3	14	5	9	8	12	7
AATGAGTAATTCGTTT	alt_5770_new	46	81	86	51	81	53	71	47	63	44
CACCTCTGCATGGTCG	alt_5770_new	0	0	0	0	0	0	0	0	0	0
GCCACTGGGCTTGAGA	alt_5770_new	3	5	4	4	7	3	12	4	10	8
AAATCACGAGATTTAG	alt_5770_new	0	0	0	0	0	0	0	0	0	0
TTTCTTGAGATTATAT	alt_5770_new	4	4	6	5	8	4	6	6	9	6
TGCTTGAGTCAATTTC	alt_5770_new	16	16	15	16	28	13	37	15	23	16
GTGGCTTACGATCAAT	alt_5770_new	28	58	48	42	71	35	57	48	53	40
TATCTGGCATTTCTAG	alt_5770_new	15	13	15	11	19	15	17	10	22	20
AAGTGTTGCCTGGACT	alt_5770_new	214	406	268	241	408	241	413	202	483	214
GTGGTTTGTTCTTTAT	alt_5770_new	101	105	106	98	104	101	133	87	132	77
AAATAGGTCAGGACCC	alt_5770_new	0	0	0	0	0	0	0	0	0	0
GAGATCAACTCTAACG	alt_5770_new	42	62	73	57	62	60	77	38	83	47
GTCGGGCCTGGTTTCA	alt_5770_new	89	141	109	90	113	83	123	77	139	98
TAGGTCTCGCGCAGAT	alt_5770_new	3	6	5	0	1	3	5	0	4	1
ACAGAATGTGTAAAAA	alt_5770_new	11	7	11	11	10	9	10	9	14	11
AATGACTTGTGCGGGT	alt_5770_new	5	2	7	4	12	7	10	7	5	2
ACAGCCACTTGCCGCA	alt_5770_new	2	0	2	3	3	0	5	1	1	0
CGTAGTATGGCTTGTG	alt_5770_new	104	163	129	125	125	104	146	96	135	100
TTACGGTTTGGGAGCG	alt_5770_new	18	20	17	10	24	17	16	19	15	6
CGGGGTTCCATCGGTT	alt_5770_new	3	6	2	7	5	5	6	5	4	8
AGTCGTGTCCGCCGAA	alt_5770_new	0	0	0	0	0	0	0	0	0	0
GAGCGACCTTTGCCCA	alt_5770_new	0	0	0	0	0	0	0	0	0	0
GCTCTTTTCCAGGTTG	alt_5770_new	25	47	25	31	49	26	39	12	59	27
GCAACGTACTTCTAAG	alt_5770_new	6	2	4	0	3	2	1	1	4	4
TTGATGACCTCCCAAC	alt_5770_new	54	82	67	47	66	70	98	48	93	48
TTATAAAATAGCGGGT	alt_5770_new	22	34	17	33	25	16	30	27	25	20
TCATGGGGTGATTGTT	alt_5770_new	0	0	0	0	0	0	0	0	0	0
ATTGCGGTTATTCTGT	alt_5770_new	13	18	26	20	19	21	19	14	16	20
TTCAATCAGCCATGGG	alt_5770_new	130	172	142	125	168	82	151	120	188	119
ATCGGGATTTCGCCGG	alt_5770_new	3	10	4	5	5	5	4	2	9	2
TATGGGATTTCTTTAG	alt_5770_new	19	19	19	11	29	18	23	8	19	13
ATTCGGCGCAGTCTGT	alt_5770_new	0	0	0	0	0	0	0	0	0	0
ATAGCTGGAGCTTTTA	alt_5770_new	40	61	59	49	51	34	66	35	59	37
AAGTGCTGTTTCTGTA	alt_5770_new	8	12	7	5	11	16	2	7	19	9
CGCAGCTACGCCTTTA	alt_5770_new	45	68	37	47	79	24	80	46	66	33
TGGTCGGTCAAGTGAC	alt_5770_new	10	10	12	5	15	11	16	12	20	11
CCTTTATATATGCTAG	alt_5770_new	8	14	8	5	17	7	13	7	19	7
TCGTGAGGATCACCGG	alt_5770_new	60	64	81	82	112	61	101	48	91	52
TAAGAGATCGGGGTGA	alt_5770_new	12	34	18	17	24	18	35	23	21	18
GCTAGTCATGTTTCCA	alt_5770_new	19	29	17	14	21	12	32	9	29	17
TTGACCGTCACCAGTA	alt_5770_new	10	18	22	12	19	14	24	26	15	13
CTTAATGCCCGACCAT	alt_790_RC	18	41	23	14	25	13	34	14	31	19
TCGTAGCACCCATAAT	alt_790_RC	9	18	15	16	23	8	19	7	26	12
TCTATTAAGTTGTCGG	alt_790_RC	0	0	0	0	0	0	0	0	0	0
TTGAGATTACCTATAA	alt_790_RC	9	23	12	9	24	12	23	10	17	11
TAGTGTTATCCTTAGA	alt_790_RC	4	8	2	3	7	2	6	3	6	4
CAGAAGAGATCAGTTT	ref_790_RC	37	45	35	33	42	33	64	36	64	19
TTTGCGTCTCTCCACG	alt_790_RC	19	43	33	16	42	25	49	15	58	19
TCCGGTACTTTTTAGT	alt_790_RC	8	18	9	13	35	12	33	5	26	13
TTCTTTTAGTATGCTG	alt_790_RC	43	68	48	37	75	53	81	46	98	34
GAATTTTTTTTGGTAC	alt_790_RC	0	0	0	0	0	0	0	0	0	0
ACACATCTATTTTTCC	alt_790_RC	0	0	0	0	0	0	0	0	0	0
GTCAATCTATACTTGT	alt_790_RC	0	0	0	0	0	0	0	0	0	0
GATTCAGCCCTTCATG	alt_790_RC	14	40	30	27	44	20	57	23	34	27
CTAGCTGCTCATGTCC	alt_790_RC	22	69	27	39	98	29	76	25	99	28
ATGACCGGTTAGCGTA	alt_790_RC	1	10	1	1	0	4	6	3	0	2
ATGTTCCTTTTTTTCA	alt_790_RC	82	120	107	68	126	81	129	75	135	93
GCAGTTTAAGAACACG	alt_790_RC	11	22	10	6	18	6	25	6	21	6
TAACTCCCTTGATCCT	alt_790_RC	31	81	31	43	63	31	66	34	75	32
ACTATATTTGAACACT	alt_790_RC	19	26	10	11	27	5	28	8	20	10
ATCACAGTCATGGCGT	alt_790_RC	11	15	12	10	14	18	22	10	26	16
GTTCATCCGCTCAGTG	alt_790_RC	8	7	2	3	9	4	14	8	8	4
CATTCTTCTGCCATTT	alt_790_RC	4	3	2	1	4	1	4	3	5	1
GCTTTGGTTTTTGTTC	alt_790_RC	26	60	35	42	52	44	61	31	67	29
TTTGTGCCCTTCTCTC	alt_790_RC	24	32	26	15	34	24	43	22	42	14
GTGTAGGAGTTTTGAG	alt_790_RC	41	102	50	45	82	46	97	35	88	40
TCTCGCGCAAATCGAC	alt_790_RC	10	28	10	12	34	20	29	10	36	23
CCCTAGCTGATTTTTT	alt_790_RC	3	10	5	3	17	10	10	7	16	1
TGGTCTGTGCGTTTGG	alt_790_RC	11	35	19	13	53	23	32	12	29	10
GGCCTTCACAGATACA	alt_790_RC	0	0	0	0	0	0	0	0	0	0
ATTATGCCGATGACCG	alt_790_RC	4	21	8	10	18	8	19	7	15	9
CTTAGTGCATAGTTAG	alt_790_RC	17	33	17	17	34	14	31	17	28	17
GGACTTCAGAGTGGTC	alt_790_RC	4	14	10	7	9	10	17	5	11	7
ACACATAGACCTTCAT	alt_790_RC	31	53	32	33	63	25	71	30	84	23
AAGGCATCATATGCTC	alt_790_RC	20	17	20	10	29	11	27	17	23	12
AACGAAACACTTGTGC	alt_790_RC	0	0	0	0	0	0	0	0	0	0
CGCTTCAGACCTACTA	alt_790_RC	4	16	5	6	17	9	20	9	17	7
TCGAACCGGGTAAACG	alt_790_RC	10	16	8	9	22	13	20	7	16	9
TGCGCATCATAGTAGC	alt_790_RC	8	13	13	7	20	7	17	3	11	5
TCGCTGATAAAGCGAC	alt_790_RC	0	2	0	0	4	1	1	1	1	0
CCCTGTTGCCAACGTT	alt_790_RC	24	38	25	28	56	24	42	19	61	23
CTCGGACGCTTTATTC	alt_790_RC	33	71	49	51	76	38	81	33	75	32
AGAGCGGTGGACGCTC	alt_790_RC	0	0	0	0	0	0	0	0	0	0
CTACTATTTTTATGGC	alt_790_RC	3	7	7	2	5	5	12	2	7	0
TAGGTGCCATCATCTG	alt_790_RC	1	4	2	0	3	1	5	4	8	3
GAGGTGTTTAGGGCTG	alt_790_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTATCACTCCGC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CAGTGCGCCCATGTTA	alt_790_RC	4	10	8	10	2	2	9	5	7	9
TAGTTTTGGAGACCGA	alt_790_RC	18	38	17	8	30	13	40	14	33	11
AACGCATGGCTTGGGT	alt_790_RC	18	20	19	20	23	19	29	13	15	7
GGTGTGGAATTCGCCT	alt_790_RC	7	12	11	16	21	7	24	18	23	9
GTTAGGGTTACTTTCT	alt_790_RC	16	29	12	9	31	13	23	13	33	11
CGGGCTGCTAGCCGTA	alt_790_RC	0	0	0	0	0	0	0	0	0	0
TGATGTTGCCTGTACC	alt_790_RC	44	119	61	59	97	65	138	63	127	43
GCTGATACGGTCCACT	alt_790_RC	31	54	47	33	68	33	43	28	55	23
CACAGGACACTGTCGC	alt_790_RC	40	79	38	40	98	38	64	42	71	41
AAGGATTACAGTTTGT	alt_790_RC	3	1	3	3	4	0	4	1	2	1
TCGTCCAGTATCGTAC	alt_790_RC	67	201	100	74	180	89	176	93	218	61
CTTATAACGGCTCTCT	alt_790_RC	7	18	10	8	17	11	21	8	19	11
ATATAATTGCCGTTTA	alt_790_RC	20	47	22	19	65	19	50	28	52	12
GGAGCAGACTTCGGTC	alt_790_RC	4	4	4	5	7	2	4	4	4	3
ATTTTCTTTCTAATTC	alt_790_RC	21	25	24	21	26	14	25	23	27	18
ATTTCACGAAGGAGCT	alt_790_RC	0	0	0	0	0	0	0	0	0	0
CAGCATAATCGTGGTG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TCAGCGTTTTGGCGGG	alt_790_RC	1	5	2	0	4	1	6	1	2	4
AGATCAGTTGACTACG	alt_790_RC	13	13	17	11	25	10	27	11	18	11
GACACGTGTGGAGTGG	alt_790_RC	18	29	25	19	53	21	47	17	43	21
GTTGTCCGCTCTAATA	alt_790_RC	12	28	14	12	30	12	31	21	30	16
CGTCCACTAGCTTTAA	alt_790_RC	0	0	0	0	0	0	0	0	0	0
TGTCACTTCTTGAATG	alt_790_RC	6	14	11	5	9	1	19	1	17	6
CATTAGTCCTGGCAAA	ref_790_RC	14	24	19	13	40	14	35	10	29	9
GTTAATATTGTGGTTA	alt_790_RC	7	11	5	2	3	3	9	4	4	6
ACTGATCCCGAACCGA	ref_790_RC	34	62	46	41	69	38	46	43	53	33
ATCTAGGCAGTGTTAC	ref_790_RC	13	27	18	16	31	13	33	15	34	14
CGGATCTTCTACCTTT	alt_790_RC	16	27	37	17	37	13	31	10	46	14
GGGAACACAATTCTTC	alt_790_RC	10	6	3	4	7	2	9	3	7	2
AGGGTTTCCAATGGTT	alt_790_RC	3	8	5	5	18	9	10	6	8	6
GCAGTTAAACCGTCTC	alt_790_RC	37	51	37	35	66	29	68	28	87	31
TTGACTGCAGGCTCTG	alt_790_RC	34	72	34	36	86	37	76	22	77	32
TACTTTACTTCGGCAT	alt_790_RC	0	0	0	1	0	0	0	0	0	0
GTTCTTTGCTGCAGTC	alt_790_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGCACTTTTTAG	alt_790_RC	15	37	16	18	30	14	35	22	43	10
ACGTTTCCCACTTGTC	alt_790_RC	0	0	0	0	0	0	0	0	0	0
CGGAGACTCTTATTTT	alt_790_RC	17	14	15	12	18	7	22	11	26	5
ATCGGAATGGAAATGA	alt_790_RC	18	10	21	14	18	23	26	9	26	12
TCCTCACACCACGCGC	alt_790_RC	0	0	0	0	0	0	0	0	0	0
CTATACTTGACCTCAG	alt_790_RC	54	129	71	58	117	49	125	60	127	55
GCCATTTGTCTGAGGC	alt_790_RC	2	4	0	3	3	2	5	1	4	2
TGTGTTTCGTTCCGAT	ref_790_RC	1	0	1	0	2	0	0	0	3	1
CGGTCCAGTTTGAGGA	alt_790_RC	7	11	4	6	12	2	21	7	14	1
TTCCCAATTTGCACTT	alt_790_RC	0	0	0	0	0	0	0	0	0	0
TTTGAAAGGTCTGGCC	alt_790_RC	7	14	14	13	26	12	35	16	22	11
CGTGTAGCTGTACGTC	alt_790_RC	13	20	12	21	32	14	23	13	34	13
TGCCGATCGTGGGCGT	alt_790_RC	2	6	3	2	1	2	6	1	6	1
ACATGTTGATACCATA	alt_790_RC	0	0	0	0	0	0	0	0	0	0
ACACCCAGCCTTTGTT	alt_790_RC	34	65	57	24	85	40	72	17	78	26
TCCCACTTCTATTTGT	alt_790_RC	3	12	3	4	14	3	13	7	6	4
TGTCTAGTGACTTCTT	alt_790_RC	12	23	12	18	38	21	35	12	33	7
GATCCGGTCCCTCGTC	alt_790_RC	54	97	63	56	126	48	101	52	101	57
TCAGTCTGGTGGTATG	alt_790_RC	19	67	27	23	63	23	61	24	80	19
CAAGTGGCAGCGACCA	alt_790_RC	0	0	0	0	0	0	0	0	0	0
CTTTCCATCGGGCCAT	alt_790_RC	26	38	28	18	44	24	50	25	60	26
ACATGGTAGCCCCTGA	alt_790_RC	18	56	35	22	43	14	42	15	61	14
CTACACGGAAGACTGT	alt_790_RC	30	120	27	30	118	21	130	29	130	24
GTGGGTCTTAACCGGT	alt_790_RC	35	67	39	23	67	15	58	14	89	28
CCGCTCTCGTGGCTCA	alt_5657_new	5	12	3	1	14	0	13	1	26	0
AATTATATCGAGTCGT	alt_5657_new	20	22	28	19	24	28	38	13	39	13
GTATTGTACTATGCAA	alt_5657_new	40	123	69	47	109	63	91	47	98	29
GAAAGCGGTCATCAAG	alt_5657_new	6	5	4	1	5	2	6	5	9	0
GTTGAGTTGCGTCTAG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TATGCGCTCTTTCGTA	alt_5657_new	17	27	15	13	26	9	17	19	13	14
AAACGTTTTCCCTTTG	alt_5657_new	119	231	157	149	221	108	240	131	230	127
ACTCACCTATCACTAG	alt_5657_new	9	25	12	12	34	7	27	10	26	21
CTGTTTGGTTTCGACT	alt_5657_new	17	35	17	17	27	19	25	20	42	15
TCATGTTCCAGTAATA	alt_5657_new	5	7	9	6	2	1	6	3	16	6
GTTATCTACACATCGA	alt_5657_new	51	86	46	56	99	47	82	47	77	34
GGTATCGTCTCGTCAG	alt_5657_new	15	36	18	31	48	34	50	32	54	17
CGGCAGGTGAGCAAAC	alt_5657_new	6	17	4	5	12	2	11	4	14	8
TGCAGTGCCTAATTTG	alt_5657_new	99	179	107	104	210	101	218	120	199	90
GCATATATATTGAAGT	alt_5657_new	18	21	15	24	31	14	29	19	14	7
TATTCGTTGAACTTTT	alt_5657_new	16	34	22	14	20	9	28	16	21	8
TTATTACTCAATGCTC	alt_5657_new	0	0	0	0	0	0	0	0	0	0
CGCATTTTAACTTAGA	alt_5657_new	20	34	27	20	17	7	18	21	28	17
CACATTTGCGTCCCAC	alt_5657_new	8	25	15	9	24	7	10	5	21	9
TTAATGAGTGGGGGGG	alt_5657_new	33	32	29	21	41	23	34	22	27	19
GTTGCTTTCAGTACTC	alt_5657_new	20	32	31	26	41	20	52	18	38	20
TCCATTGGGTATTATC	alt_5657_new	37	98	74	50	102	64	90	39	108	38
CATAGGTCTCAGCCAA	alt_5657_new	47	84	40	52	71	41	78	38	71	37
TTCGAAAGCCTGGTCC	alt_5657_new	24	39	19	13	23	10	51	7	30	18
CGCTGCGGCTGTAATT	alt_5657_new	5	16	4	9	16	6	6	6	15	5
GGAGTATGGCAAAGGT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TGCACATAAATAAGTT	alt_5657_new	48	85	67	47	97	42	108	71	116	50
TTTATGCTTTCTCATC	alt_5657_new	41	40	36	33	62	44	48	34	73	28
CTAGCTTAGCTCGGTT	alt_5657_new	11	16	20	12	27	13	25	9	24	7
GCACCCGATGTTTCCG	alt_5657_new	33	47	40	30	42	31	49	36	66	32
GTGACCATTCAAGAAC	alt_5657_new	0	0	0	0	0	0	0	0	0	0
GACCCTCTCCCGTACT	alt_5657_new	29	40	24	21	42	20	36	21	37	16
ACATCAAGTTTTCTGC	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TTTTTCACTGCATTTT	alt_5657_new	16	25	18	15	22	6	34	15	26	12
CTCGATAGGTAACGAA	alt_5657_new	0	0	0	0	0	0	0	0	0	0
AGTACTATGCTAAATA	alt_5657_new	5	2	8	7	5	4	2	1	5	1
CATCGGATTGCCACAG	alt_5657_new	20	24	13	18	28	20	35	17	28	25
ACGGAGCGGGCTTCAT	alt_5657_new	45	76	49	64	87	47	73	32	94	53
CATGTAATTTCCATCC	alt_5657_new	11	20	23	10	30	11	33	18	24	15
TGCGCCGGGCGCTCAT	alt_5657_new	6	18	9	5	12	10	14	7	19	8
GGGGCTTGTACCTATT	alt_5657_new	8	11	12	4	10	1	8	2	15	5
CATCAGTTAGAGTTCT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
CCAAGCTACTGTAACA	alt_5657_new	21	67	27	24	74	18	79	20	81	11
TACTGTACATTTTACG	alt_5657_new	12	37	19	23	32	22	36	22	42	13
AGGTCTTCACGTATAG	alt_5657_new	18	27	25	12	35	12	24	13	17	15
GGTTACAATATTTTAC	alt_5657_new	16	32	29	14	37	11	37	24	40	19
CGTATGCCATCGAACT	alt_5657_new	12	21	16	6	22	6	21	15	26	9
AGCACTTCGCTCGAGA	alt_5657_new	81	149	122	90	157	86	167	103	173	84
AAACCGGTGGGGTATT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
GGATACAGCGTGTGCT	alt_5657_new	33	38	40	26	40	31	40	24	41	29
TGCTGAACTCCGTCGG	alt_5657_new	42	73	45	35	69	32	85	49	77	40
GAGTGGTGAATGTCCA	alt_5657_new	15	26	21	16	18	10	17	6	23	7
CTCGATATATTCTATG	alt_5657_new	30	42	44	19	57	28	52	23	76	31
CTATTGGTCAACTCAT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
AATCCAACCCTTTTAC	alt_5657_new	20	32	29	23	39	30	42	24	42	13
TATCCTGTGCGTTATA	alt_5657_new	5	21	18	17	29	7	21	19	25	6
TTTGACCGATTCTCAC	alt_5657_new	0	4	3	7	3	1	7	2	3	1
GTCTAAACGCAAACAA	alt_5657_new	4	13	10	9	9	4	17	8	20	1
TCGTTTAACTTTTGTG	alt_5657_new	23	25	19	15	31	12	37	17	35	17
TCATCTGCTCGGGTTG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TCCTTTCCGTACGTAT	alt_5657_new	68	136	104	75	157	51	156	60	137	53
TCATCCATTGCGATCT	alt_5657_new	37	55	27	40	47	34	40	25	47	31
TGACGGAGTTTCTGGT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TTAAAGGGCGTAAGTG	alt_5657_new	29	78	44	35	59	49	65	28	77	37
AGGCAGAAAGTTTAAG	alt_5657_new	7	15	9	11	16	5	10	4	8	4
GCCCTCATTTATTGCG	alt_5657_new	42	75	37	36	74	41	82	46	72	46
TAGAAGAAGCTTCCCA	alt_5657_new	12	26	25	17	34	16	34	13	43	12
GGCCTACGAAACATTG	alt_5657_new	45	60	47	38	65	46	69	31	66	34
GTTTGGGCCGTAAGTC	alt_5657_new	0	0	3	0	4	3	6	1	4	0
ATAAATTTTTTGTAAT	alt_5657_new	8	21	12	10	22	12	16	13	18	8
ATGCGTCGCAACCACT	alt_5657_new	9	23	16	11	15	11	23	10	13	7
CAGCCACGGCGGACTT	alt_5657_new	4	11	5	12	16	3	16	7	6	5
ATACCTTCAAATATGC	alt_5657_new	3	4	3	4	9	4	8	3	14	2
CGTAGGACCCTAAGTA	alt_5657_new	12	15	18	2	10	8	9	5	11	8
CTTTACACGCTGCCAA	alt_5657_new	2	4	7	5	9	4	8	3	8	2
TAGCTAGGTGGGATAC	alt_5657_new	0	0	0	0	0	0	0	0	0	0
CTTTGTCCGGGAGTCG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
AAGATTGCTCTGACGT	alt_5657_new	6	13	13	10	14	6	20	7	16	7
TTGAGTACATTGAACT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
ACAACACATTTGGGTT	alt_5657_new	3	9	4	3	6	3	14	2	7	3
GCATTTCTATGCTTGG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TAGCATGGTCACCTCG	alt_5657_new	121	208	167	122	228	139	215	103	212	108
TGGTTATCGAGCTAGG	alt_5657_new	125	170	138	119	224	133	173	109	171	110
GTGCGTAAACGCTGGC	alt_5657_new	23	51	37	31	51	42	62	22	60	22
TAACATTAATGGCTTG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
TTGTTGGTTTGATTCG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
GCGCTTCCAGTCTCTA	alt_5657_new	65	110	76	47	87	60	136	61	134	61
GGGGTATGGCAAAGGT	alt_5657_new	0	0	0	0	0	0	0	0	0	0
CAAGACCCCAGTTTAG	alt_5657_new	3	6	2	3	4	1	7	3	4	3
ACGACATGCTTTCCGG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
CGTTGAGTTTGGACGC	alt_5657_new	19	34	21	12	39	25	44	17	44	12
ATCTTCTGATATAATT	alt_5657_new	27	43	32	32	45	22	43	32	43	23
GAAATGCGACCAGGGA	alt_5657_new	54	75	50	38	62	47	84	46	86	49
TCTGGGTACAGTTCTC	alt_5657_new	7	22	12	17	16	13	16	16	22	8
TTATTTAAGAGCCTTG	alt_5657_new	27	73	42	32	62	25	48	28	60	27
ATTCGAGTTCAGAAGA	alt_5657_new	22	25	23	23	29	17	53	22	38	17
GAACCTTCAACAACGT	alt_5657_new	20	53	44	31	50	42	38	31	54	36
GATTATCTGATTGGAG	alt_5657_new	0	0	0	0	0	0	0	0	0	0
CAACTAGCGAACTCCT	alt_5657_new	7	15	8	6	19	5	14	3	15	7
TATTCGAGTTATCAGT	alt_5657_new	3	6	4	6	6	2	6	4	12	1
GTACTTTTTGGAGATA	alt_5657_new	0	0	0	0	0	0	0	0	0	0
ATTGTTTCCCGACACT	alt_5657_new	22	27	29	23	60	17	34	26	55	21
GTCCTTCATTTTCTGG	alt_5657_new	116	141	164	97	157	110	159	101	169	89
GTTTGCTGTTCTACTC	alt_5657_new	5	3	4	7	3	3	12	3	4	4
AATCAATGCATGTGGT	alt_5657_new	12	9	10	2	10	4	19	10	7	6
TTGGTATATCTCCTTA	alt_5657_new	0	0	0	0	0	0	0	0	0	0
CAGGTTTTGTCAACGA	alt_5657_new	1	2	2	1	1	3	2	1	4	0
AATTAGATGTTGTCTG	alt_5657_new	3	0	0	0	2	3	1	0	1	0
CCTCTTTTTTGATAAA	alt_5657_new	37	55	52	31	64	38	69	37	53	24
TTTACGCAATCTTATT	alt_5657_new	4	7	1	2	2	1	3	1	4	2
GCCCGCTCCTTAGGCG	alt_5657_new	12	13	3	7	14	7	15	7	17	14
GAACCGAGGCTGGAGT	alt_5657_new	22	46	20	23	51	18	54	18	49	29
CCGCGAAATGACATAC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
AGTTTGCCCGCTCTCT	ref_5727_new	6	8	5	2	5	2	6	6	0	1
ACCCAAGTTAAATAAC	ref_5727_new	33	57	38	45	56	28	73	28	52	30
TCACGCGCGGGAACCC	ref_5727_new	12	21	18	13	23	18	28	14	24	10
TCCGGTGTCTTCGATC	ref_5727_new	4	9	9	9	16	9	8	2	16	10
GCTATTCACAATTCTG	alt_5727_new	57	78	61	57	73	59	83	60	71	48
TGAGCGCTCAATCCAG	ref_5727_new	27	52	59	37	51	29	51	37	52	28
GATCGGTATCCGAGGA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GCCTCTTTGGACCTGG	ref_5727_new	27	60	44	37	51	32	53	33	62	24
CTCCCCTATCTCAGTC	ref_5727_new	0	3	0	1	1	0	0	0	2	0
TCTCGTGTCGTGAATA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TTCTATGACGCAGTGG	ref_5727_new	5	5	5	7	5	8	2	4	4	3
CTTTTGCACCACTCTT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GTGTTGCTATCATAGG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CATTATTGGGCTACCC	ref_5727_new	27	67	30	32	60	34	77	18	82	26
GGTCAATTTTTCGACT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CATTGTTTATGAGATC	ref_5727_new	1	3	4	0	11	2	4	3	8	0
ATGTGCTCAGGTGATT	ref_5727_new	14	30	15	11	18	14	28	13	20	12
ATAATTGTGTTTTGCT	alt_5727_new	41	73	67	43	59	47	76	34	69	36
GCACCTATAGTGTAGG	ref_5727_new	0	1	0	0	2	3	1	2	3	0
AACGGTCCAGGCCTAC	ref_5727_new	5	30	6	12	24	7	22	4	27	9
ATTATTCGGTTTTGCA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GCCTGTCGATAACTTG	ref_5727_new	6	5	3	8	5	8	7	4	1	4
TCGCCTAGTCCAGGGA	ref_5727_new	37	50	38	47	45	27	53	34	61	23
GTGATTCTATATACAT	ref_5727_new	18	35	21	16	61	26	49	21	46	18
CCCCGTTTACGGGCAA	ref_5727_new	5	26	2	5	19	5	24	6	17	4
AGTAGATTTACGGTAA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CCTCATCTTGGGTAAC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TAAAATTTTACGTTGT	ref_5727_new	36	59	36	33	38	32	44	22	63	33
ACCAGCACATGCCTTG	ref_5727_new	2	12	2	3	15	5	16	3	16	1
GTTCCGTCTAGAACAG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TATCCCGCTTCGTTGC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CTGAAAGTAATGCCGA	ref_5727_new	76	84	84	91	98	63	83	66	68	64
AGACAGGAATTGATCG	ref_5727_new	31	42	35	29	56	15	48	33	52	34
GGTAAGATAATCTATT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TACAGTAATTGGTTAT	ref_5727_new	18	26	17	19	19	11	27	25	33	17
TGCGATTTTACCTACT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CAGTGTTCTTGTTGAG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GAGGGGTTGTCACGCT	ref_5727_new	97	132	163	108	115	114	151	113	154	89
TTGCATGCTGCATGTG	ref_5727_new	14	27	29	22	33	16	31	18	33	13
AGGTATCTCAACGATT	ref_5727_new	11	9	3	4	11	2	10	1	11	5
CGTTCCCTTGGGCTAT	ref_5727_new	31	41	34	26	46	24	57	30	49	33
AATGTCCTCCGATACC	alt_5727_new	17	15	9	13	15	9	24	16	22	10
GACTCTACTTCTCCCT	ref_5727_new	18	33	15	18	41	16	40	16	57	17
TTTCGCAACACGGCCT	ref_5727_new	2	12	8	7	8	7	9	8	11	7
AGCGCAATTAGGTAAC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
AAGTGGCAGGATCATG	ref_5727_new	106	128	117	107	127	131	125	102	140	100
CCCATCCCTGTCTCAC	ref_5727_new	6	1	5	1	5	1	4	4	1	1
TTAACCTATGGGGCCA	alt_5727_new	58	97	85	64	75	56	88	68	96	48
CCTTTAAAGTTTTCGC	ref_5727_new	8	9	8	7	6	11	5	6	5	4
ATTACTCGACGACCCT	ref_5727_new	21	63	37	35	62	36	51	40	60	29
CTAACTGCTAGCAGAA	ref_5727_new	25	37	40	37	56	31	45	45	59	33
TCTTCCCTTAATTTAA	ref_5727_new	37	51	39	28	53	38	40	22	52	32
AGGCATGGGCGCTTAG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CAAATTTTTAGCGTGC	ref_5727_new	2	5	5	3	6	3	8	5	2	2
TGCGGTTGCGAATAAC	ref_5727_new	22	42	25	19	39	28	43	22	39	14
CACTTACTGCTCGCCT	ref_5727_new	17	38	26	21	39	22	43	22	34	14
GAATTATGGTGCATAG	ref_5727_new	19	47	49	31	42	25	64	24	65	25
CCAATTTGAGCTGTCA	ref_5727_new	27	38	38	29	52	25	37	34	50	19
GCGTTTCAGCGGTGCA	ref_5727_new	94	88	106	109	129	99	112	88	116	89
TGCCCGGCATCCTCCC	ref_5727_new	20	26	21	17	18	17	27	15	20	19
TACTGAACGGCGTCTC	alt_5727_new	40	77	63	50	74	46	70	37	84	33
GTGAATTCCCGCGCGT	alt_5727_new	13	15	13	8	13	11	12	12	24	13
CCCCAACCTTGTACAC	ref_5727_new	0	1	3	2	0	1	3	1	0	0
CCACACTTATTCCGTG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GGGTCTTGCTTTCCAC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
AGTATCGATTGGTAAG	ref_5727_new	10	16	15	9	21	5	11	13	17	16
CCTTCTAAATTAGCTT	ref_5727_new	48	67	60	53	91	50	62	62	76	45
CTAGGACCGGCATTTA	ref_5727_new	17	30	25	13	32	28	22	13	28	10
GCCAGGGCTTGGCCCA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TACTCGTTCTGGTAGC	ref_5727_new	7	9	2	0	9	4	2	6	5	3
ACCCGTCTTCGCTGAC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CATAATTTGAGTCTTT	ref_5727_new	31	23	29	21	36	20	30	16	37	23
GTGGTCAAGTATACGC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CAGTGTACTTGTTGAG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GTATGCAAAAAATACG	ref_5727_new	120	196	130	112	200	121	189	105	189	98
TACTAGAATTCCAAGA	ref_5727_new	35	47	54	45	66	40	53	34	60	31
ATTGTAAGTGAAACTC	ref_5727_new	0	1	4	1	2	0	0	0	3	1
CAATACGGCCTTCCTG	ref_5727_new	9	5	5	3	4	4	6	4	7	6
CAGGTGGCGAATATGC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GCAAGTTGCGCATTCT	ref_5727_new	41	24	21	23	47	26	47	19	40	25
TATTCAGCGTGCAGTT	alt_5727_new	26	34	30	25	40	22	22	23	27	24
TCCCTGTCAAACATCG	ref_5727_new	23	55	30	36	35	30	60	12	50	17
CCGATGTTAGCCTCTC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TGTTCCTTTTACATCC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GGCTTCTACTGTCCTT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
ACAATTACGGTATCTT	ref_5727_new	97	102	99	116	97	78	115	72	117	81
GACCGGGAAAGCGGTT	ref_5727_new	2	8	6	1	5	3	4	3	5	1
TCAGTTACGGTAGCTG	alt_5727_new	77	142	113	89	125	73	117	91	130	65
GTTATAAGGTTGTTAC	alt_5727_new	3	1	6	6	3	1	9	7	3	1
CAGTTAGATAACCTTA	alt_5727_new	16	140	22	10	157	7	143	9	159	13
TCGCGGATTATGATGC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CTTGCTGTTAACCTTC	ref_5727_new	1	2	4	4	1	0	4	0	6	0
TATTCAACGGGGGTGG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CGTCCCCACCAAGGTA	ref_5727_new	304	393	341	297	398	273	407	288	408	238
TGCCTTGTCCCCTGCG	ref_5727_new	35	66	48	30	35	36	46	28	44	37
CTTACCCCGTTTTCAT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GGGTCTTGCTTTCCTC	ref_5727_new	8	6	3	4	7	3	8	3	5	5
TTAATCGCGCTGTTGA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
AATTCACGGATCTGGT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TTGGGTATTTTCGCTG	ref_5727_new	61	80	70	70	91	50	93	39	93	52
GTCGTGTAGTACACTG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
AGGGTAATCATCATCT	alt_5727_new	5	16	12	12	19	12	19	15	18	12
TTGATCCTTTAGAGCG	ref_5727_new	24	45	27	32	23	24	39	13	36	23
TACCGAATGTCATACC	ref_5727_new	36	42	42	28	38	30	49	28	55	31
ACGCAACTATCAGATC	ref_5727_new	31	57	50	40	50	28	64	31	47	33
GTATTTGTACGAGGCG	ref_5727_new	12	9	9	10	4	9	17	15	10	11
AGACGTGTTCATGAAT	ref_5727_new	12	38	24	20	26	18	34	21	25	18
TTTACCTCTGGATATT	ref_5727_new	7	26	15	16	22	11	16	21	32	10
GCCGTGCGCAAACTCT	ref_5727_new	15	28	26	22	22	23	31	14	24	17
CTTGTTTTCCGTCCTA	ref_5727_new	6	15	13	13	10	17	11	5	18	6
GAGGGTCTGGGATTTT	ref_5727_new	17	12	18	10	14	16	26	7	22	13
TACTGCCCTCTCATAC	ref_5727_new	13	17	7	5	16	7	15	6	20	5
TTCACTTTCCATGACA	ref_5727_new	50	78	78	57	78	59	63	50	79	53
ATTCTACTCTCTTTTA	ref_5727_new	58	71	54	56	84	53	90	47	73	50
GCCCCGATCAGATGAC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TTATATGTGATCTTCC	ref_5727_new	54	41	51	52	57	39	54	43	44	44
CTCCACATCGGACCAT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GCCGGTGTAAAGCTTG	ref_5727_new	14	24	19	13	24	9	15	12	21	5
CTACGGTTGCTTGCCT	ref_5727_new	0	0	1	0	0	0	0	0	0	0
GGCTCTTCGCAGTTGC	ref_5727_new	12	12	8	7	5	6	11	3	6	5
GCTCCTGTCATTTGGT	ref_5727_new	44	75	47	38	66	45	70	44	86	42
ATCCAACTGCTTCTTA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TGGGTCCTGCTTAAAA	ref_5727_new	16	25	20	11	29	21	25	20	25	19
TGCTGCCCAGGCGGTA	ref_5727_new	174	229	211	197	231	157	252	190	232	146
AAGAGCCGGAGCGGAG	ref_5727_new	75	108	76	72	134	77	108	88	98	74
AAGTTAGCAGGACATG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CTTGACTAGGCGATTA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
ATTGTCTTGCATTGGT	alt_5727_new	4	11	3	2	10	5	8	4	7	3
ATTTGTGTCCCCTTTC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CATAATTTGAAACTTA	ref_5727_new	23	29	20	22	23	18	32	20	31	6
CCGTCATTAACGGGCT	ref_5727_new	17	22	16	17	15	15	25	16	22	20
ATTACAAGGAAGCCTT	ref_5727_new	11	21	31	19	13	11	13	10	14	13
TTCCTTCTTTACGAGG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GTTACAAGCGCCCGGG	ref_5727_new	18	34	22	24	55	16	30	28	22	15
TATTGTGCCGTAACGG	ref_5727_new	6	8	1	4	5	5	6	6	6	1
TCTCGCACCTCTGTTG	ref_5727_new	4	10	8	7	10	6	10	6	6	6
GCCATACCTTGCTGAT	ref_5727_new	61	128	98	77	118	89	123	67	141	54
GCTCAAAAGATGCGTA	ref_5727_new	1	8	1	1	2	2	3	0	3	1
GAGATACGTCAAGACG	ref_5727_new	109	117	96	95	125	107	169	82	134	94
GAGAATGGGGTGCTAT	ref_5727_new	1	0	0	3	4	6	3	0	3	2
GATGATCCTCATTCCT	ref_5727_new	0	0	0	0	0	0	0	0	0	0
CATACCCATCCGTCCA	ref_5727_new	20	33	34	26	37	20	30	14	38	15
CCTTAATGTCCGCAGA	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TATAACTCTAGTTACG	ref_5727_new	6	17	9	8	24	14	19	11	18	8
TGAAGGGGCTCTTTTA	ref_5727_new	6	6	4	6	5	5	4	4	14	6
TGGGACCGAAAAATTG	ref_5727_new	120	120	145	114	158	99	155	115	184	100
GGCGACCTCAGGGTTC	ref_5727_new	57	78	66	67	63	55	80	54	70	55
GTATTTGGGATAGTAT	alt_5727_new	83	122	105	78	138	85	152	93	149	77
GTTTAATAGGCTTTGC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
GCGCCAGCTTGGTATA	ref_5727_new	14	17	19	8	14	18	21	12	20	8
GACTGTTTAGGCATGT	ref_5727_new	28	19	28	22	29	17	19	19	25	8
GTTTGGATTTCGAAGA	ref_5727_new	27	40	46	52	45	41	34	31	41	35
CTTTCAGTCCAAGAAG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
ATGAGGCCATGCGGTG	ref_5727_new	26	25	34	18	34	30	29	27	34	32
CAATAAATCCTCAATT	ref_5727_new	11	13	13	11	7	11	30	13	18	8
CGCATACTATTAAGGC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
TACCAACAGAAAACCT	ref_5727_new	33	56	43	42	48	41	55	31	57	36
CGTGAGCTGAGGCGCC	ref_5727_new	0	0	0	0	0	0	0	0	0	0
GTTGGCGTTGGGTCCA	ref_5727_new	39	39	33	18	35	29	42	29	39	29
AGGCCCTGCGAGACAG	ref_5727_new	37	81	72	47	67	53	71	52	74	53
ATTTGTAACTTCTTTA	ref_5727_new	12	2	8	12	12	9	9	8	7	8
ATGCTTTATTACTGCA	ref_5727_new	212	377	242	220	327	229	364	199	392	198
ATTTGCGCCTAATCTT	ref_5727_new	100	155	150	113	163	110	195	124	161	97
TGCACATTTCGAATGT	alt_5727_new	10	12	21	11	14	9	10	10	17	12
CCACAATACCCAAATC	ref_5727_new	53	81	41	63	79	40	84	41	80	37
CTGAAGAGACTCGGAG	ref_5727_new	26	29	23	22	38	14	36	19	30	18
GTGAGGTTTAAGATTC	ref_5727_new	28	41	30	29	32	27	32	19	39	18
TCTTCCATCAAAGGGT	ref_5727_new	9	4	8	9	8	6	13	6	12	6
GCAATGATTCACGCCC	alt_5727_new	123	201	201	131	244	139	204	132	193	103
TTTTATGAACGTAAAC	ref_5727_new	27	46	38	31	44	32	45	31	32	24
TAAAGACGGGAGTCCG	ref_5727_new	0	0	0	0	0	0	0	0	0	0
ATGTGTTATACTTCGG	ref_5727_new	9	36	19	25	34	22	27	22	29	15
TCTGCATCCTCATTGC	ref_5727_new	62	84	69	85	83	55	104	48	127	50
AACGTTTTAAGGAAAA	ref_5727_new	1	3	2	1	2	0	1	3	0	1
CCGCTCCGACCTAGCG	ref_5727_new	0	5	2	4	5	1	5	2	3	4
GTGTCAGACGGTCGCT	ref_5727_new	36	34	51	40	44	24	42	32	43	30
ATATTGGTTTTCGCCC	ref_5727_new	2	6	2	0	3	1	2	1	9	1
CTCTACGCTGTGAGTC	ref_5727_new	22	27	26	14	43	22	31	19	30	22
TTGGAATTGGTATGAG	ref_5727_new	19	25	22	14	17	12	15	20	19	9
AACCTGGAAATTGCAA	ref_5727_new	18	26	20	16	30	13	23	10	34	12
CGTTATGGTCCTTGCA	alt_1841_RC	32	23	45	46	33	37	40	41	34	28
TGGCATAATTTGAGGC	ref_1841_RC	43	60	51	41	52	43	43	44	50	45
TCCTGAAGGGTGGCAA	alt_1841_RC	29	26	40	26	30	43	33	30	28	21
TAGAACGCTGCTCAAT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TCTCGTTCTTGCTTCT	alt_1841_RC	45	36	61	51	43	29	35	48	41	47
CACTCGATAGCGCTCT	alt_1841_RC	17	22	18	18	21	22	11	14	28	13
TGCTGTAGGGGTCGAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GCAGTCGTCTCTCGTC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GCAGCAGGGATCGCTT	alt_1841_RC	11	36	30	24	28	34	25	27	23	22
CCACCGCGTCTGTCTT	alt_1841_RC	7	19	4	8	30	5	16	10	23	10
TACCATACCATATCTC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GCGCGGGGAATTGGGA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CATGATATCTTATTAC	alt_1841_RC	97	112	129	105	112	93	106	104	123	98
GGTGTGTTTCAGCCCC	alt_1841_RC	2	0	2	0	1	0	0	1	3	2
GCCGTACCTCTTGCCG	alt_1841_RC	12	18	8	8	15	11	11	7	33	12
TTAGAAAAGGCATCCT	alt_1841_RC	7	11	17	12	19	10	18	13	7	9
ATTTCGTCATTCTTCC	alt_1841_RC	0	0	1	0	0	1	0	0	0	0
CGGCACCCCCGCAGTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GGCCATGTTAAGTTTG	alt_1841_RC	18	24	25	24	24	24	32	26	16	11
GGACAAAATACGTTAA	alt_1841_RC	108	110	134	116	122	109	126	101	138	106
CAATGTTGATTGGTCA	alt_1841_RC	6	4	10	3	9	8	11	6	12	8
AATGTGACTCACGATC	ref_1841_RC	8	7	11	3	17	16	4	9	18	8
ACAGGTCATTCGAGAT	alt_1841_RC	15	9	8	21	14	11	20	10	12	16
TTCGTCGGTGGAGTAA	alt_1841_RC	58	75	81	68	62	58	65	64	63	58
TCTGGCGGTTTTTTCA	alt_1841_RC	20	23	22	23	24	19	22	13	22	17
CATCATCTAATGTTCC	alt_1841_RC	18	19	28	20	15	11	18	14	12	16
CGCCGCCTTCTGGGGG	alt_1841_RC	163	240	197	170	185	173	201	148	235	124
CCACTTATGTCTCCGC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ACACCGCTCTGGTTCT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CTATATTCTGGCAGGG	alt_1841_RC	42	49	68	43	81	46	75	47	71	53
TCAAATTCCGATTGCT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TACAAGACGTGTTCAA	alt_1841_RC	50	47	67	53	47	35	57	43	60	59
GTGTTCCGGGAAATCT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CAAACATGGCTCGTGC	alt_1841_RC	101	103	128	103	96	82	104	91	94	78
CCGAATGTCCGTTTAG	alt_1841_RC	62	64	66	61	61	45	68	53	82	46
TAATAATTTCATAACG	alt_1841_RC	54	27	52	42	38	33	38	29	28	36
GCGGGTCTCATGACAT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GGGCTGGACGATACAT	alt_1841_RC	4	3	1	1	0	1	0	3	3	2
GACATCAATTGATAGT	ref_1841_RC	175	157	227	178	145	162	164	163	214	162
CCTAGCTACGCCTCTC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GATTATTTTCTCTTGC	alt_1841_RC	18	9	11	20	6	9	6	6	12	8
TAGTATCCAAAAGAAT	alt_1841_RC	56	63	67	52	37	58	79	44	66	33
ATTTCGGCCTCGAGCA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TTGTGCGGATATCTTC	alt_1841_RC	223	208	249	199	236	189	222	211	235	189
GACGTAGTGAGGACAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TACGACCCGCGGTTTT	alt_1841_RC	2	8	6	4	7	7	3	7	2	3
CTGAGCAATTTAGTCA	alt_1841_RC	22	31	29	11	33	24	29	26	34	19
AATTTTTTAGTATTGG	alt_1841_RC	700	646	901	714	669	651	690	670	746	586
TCTGTATTAATGTTTA	alt_1841_RC	0	0	0	2	2	3	1	1	0	1
ACTTACATGCCCTTGA	alt_1841_RC	3	2	3	0	6	3	5	3	2	2
CTGGAGTTGTAAATTT	alt_1841_RC	26	37	44	31	37	26	39	30	41	26
GGCCACACGAATGTTC	alt_1841_RC	4	8	5	7	15	4	12	8	10	5
CGGATCATGGCTTGAT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TTGTCCTCAGTGCAGA	alt_1841_RC	43	46	68	56	49	41	51	43	50	49
GCCAACAATAAGGGGA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TATGCGTAAAAGACGT	alt_1841_RC	2	21	4	1	11	5	24	2	18	5
CGGGTTTGTGCAAATC	alt_1841_RC	4	2	2	6	5	4	4	3	5	2
TTGCTACAAACTTAAC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCCTTATTTCGC	alt_1841_RC	5	18	12	6	14	8	12	3	19	5
TTTACCGGCGACCTCT	alt_1841_RC	5	17	8	9	12	2	13	3	10	3
TGTGAAATAACAGGGC	alt_1841_RC	27	19	28	24	23	24	21	14	20	14
TGTGGCTGGGCCTAGA	alt_1841_RC	29	35	28	27	34	26	35	27	31	27
AGCCGCGCCCGTATGG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GGGTCAGCGCTATTAA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TGCCGTTACAATTTGT	alt_1841_RC	8	11	15	9	7	8	6	9	7	9
TTTGAGCACGTCAGTA	alt_1841_RC	10	19	20	12	15	13	16	11	12	2
GCTCTGGTCCTGGCTT	alt_1841_RC	60	65	78	80	64	65	77	68	78	61
GGCAAGTGTGTTATTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTGTATTAATGA	alt_1841_RC	12	26	11	12	25	13	21	20	13	10
AATGCACTTCCAATAG	alt_1841_RC	28	49	34	37	48	22	41	42	56	30
TCTCGTAGCGTTTTTC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TCATATCCGTCCCAGC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GAACTCAACTGTTTCA	alt_1841_RC	55	60	59	46	53	49	69	65	75	52
GCCGGCGCAGCGTAGG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ACGTCCTATTTCTTGG	alt_1841_RC	14	17	12	17	25	22	15	17	17	9
GCGTTTAGATGCCTGA	alt_1841_RC	9	8	5	9	12	10	6	9	6	6
GTTTACGGTCAATGAC	alt_1841_RC	77	82	102	60	85	70	103	69	86	73
CGAGTATCCAGCGACT	alt_1841_RC	51	35	60	26	35	46	36	35	43	32
TTCTGATAACGTCCTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TCTATTGAAGCGCTTT	alt_1841_RC	145	174	154	141	138	164	169	159	139	142
ACGTCTGGATCCAGGA	alt_1841_RC	112	125	114	114	158	114	151	100	169	106
CTCGATCATTACAATG	alt_1841_RC	45	45	46	51	45	50	44	45	56	30
TAGGTTGTTCCTAGTT	alt_1841_RC	39	42	59	57	46	52	59	46	62	30
TAGTGGCTAACTGTAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CAGGTGTTCGATTCAA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CTTGCGGACTGATAGG	alt_1841_RC	13	5	14	7	5	5	0	1	10	8
CTCCAATGACGCTAAA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TACTAAATTTCGGGCG	alt_1841_RC	4	3	1	6	2	0	4	0	1	2
GACGTTCTGGATGCTA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GATGACGTGTCTTATT	alt_1841_RC	24	15	27	14	11	17	23	13	12	21
TCAGGGCTGATTTATC	alt_1841_RC	56	40	61	53	52	53	60	43	66	59
TCCTAACCTTCTGGTT	alt_1841_RC	22	27	25	15	36	35	27	26	39	22
AGCCTGTAAAACCTAA	alt_1841_RC	3	5	10	5	15	9	2	6	5	2
GAGGCTCATCTCTGAC	alt_1841_RC	44	53	48	49	37	37	48	39	50	49
TTGTCAAGGTCGATGT	alt_1841_RC	18	25	24	26	35	17	30	20	36	22
GGGCTAATCGTATCCC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TTGTGTGGAGGGCAGT	alt_1841_RC	47	57	76	70	66	67	74	53	65	50
GTCAACGGGCTTTTTA	alt_1841_RC	37	31	38	27	31	33	21	13	27	31
CATGAGTTCGTATCTC	alt_1841_RC	32	34	45	34	41	41	29	27	50	28
TCAGTTACTCAGAGAA	alt_1841_RC	23	37	43	24	29	27	38	23	31	22
TCACCCCGTTTAGCTG	alt_1841_RC	1	3	3	0	1	0	1	0	1	2
CCGTCGGTTCGCTTAA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CGTACTTGTAAACCGA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GGGCTTTCAATTACTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CACTTTTTTCTCAATC	alt_1841_RC	20	26	11	16	19	20	24	17	19	18
ATCTTCTAGTGCTGTT	alt_1841_RC	26	34	44	34	39	20	28	27	45	29
TCGGTTACAGCCCCCA	alt_1841_RC	26	27	25	20	24	16	22	27	24	24
CTTACCGGCTTTATCC	alt_1841_RC	36	41	34	31	48	34	54	25	54	24
GTGGACGGGCATAGCA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
AGCGTCTTTCCACTTT	alt_1841_RC	46	46	52	48	52	41	46	56	50	32
GACAATTCTTTGGCGA	alt_1841_RC	15	20	9	17	24	13	20	15	20	13
ATTGGGTTCTCGTTTT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CCGCCGAAGGCTCTGG	alt_1841_RC	4	5	3	4	3	5	2	4	5	5
CACCGTTTCGAGCAGA	alt_1841_RC	34	35	40	37	43	33	36	23	43	29
ACCGCTTTAGCTCGCT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ACACTGAGCTTCAATT	alt_1841_RC	1	3	2	3	1	1	1	1	0	0
TGTAGCCCCATACTCT	alt_1841_RC	9	18	12	17	11	18	16	25	16	11
CCGTCTCTCGTACATG	alt_1841_RC	3	1	5	9	5	1	6	3	4	1
ATTCTTACCCTCCTTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GAGTCCGTGTGTCTTC	alt_1841_RC	15	17	16	11	11	14	13	14	14	16
GATGCATTGGTACTCG	alt_1841_RC	3	9	7	10	4	4	5	6	9	2
TCATTCGCCGGAATAT	alt_1841_RC	13	15	13	9	21	8	16	6	16	8
AGTCCTTTTTGCTTCA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GGTTGCATATGGATAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GAGTTGTTCGGATGTG	alt_1841_RC	58	57	60	43	61	52	72	47	74	58
CAGTATCGGTCTTCTC	alt_1841_RC	10	11	14	13	8	4	8	7	16	6
CGTATGGACCGGCCAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TGCGTCTCACCACGTT	alt_1841_RC	52	62	77	55	44	46	65	49	54	43
GAGGGTTAAACTAGAA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TAACTTGTACCCTATT	alt_1841_RC	15	5	11	10	12	3	5	8	5	6
AAATTTTTAGTATTGG	alt_1841_RC	0	0	1	0	0	0	0	0	0	0
ACGCATCTCTTTATCC	ref_1841_RC	179	110	186	197	124	139	132	141	128	131
CCCTAGACTGCTTCCG	alt_1841_RC	6	2	5	5	4	3	4	7	7	3
CTATGAATAGGCTTCT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CACTGAGGCCAGATAT	alt_1841_RC	10	14	25	8	11	12	22	11	18	12
GGCTAGGACGTCTCGG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TAAGGGTTTCGAGTTT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ATTCCCTACGCTATTC	alt_1841_RC	1	1	0	1	1	2	4	3	1	1
GGTAGGGGCATGGCTA	alt_1841_RC	3	5	1	5	3	1	4	1	2	2
TTTTGAGTGCTTCTAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GAAGAGGTCTCCTATC	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GGGGTTTTGTGTGTCA	alt_1841_RC	18	26	8	12	20	19	35	18	23	22
ATTTGTTTCAACAATC	alt_1841_RC	51	44	63	52	51	46	63	44	52	33
GATATGGTTGACTCCC	alt_1841_RC	62	71	75	55	73	56	70	51	70	44
TGAGTTTCAGCAGGAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CCCACAATGTCAGTGG	alt_1841_RC	15	10	14	16	18	13	11	5	17	8
AAGCGGAAAACTGGTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCCTGCTTGGTT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ATGGTGGCTTACAGTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ACGTGAATCCAACTTC	alt_1841_RC	12	15	17	11	9	9	9	17	18	11
ATTGGCGACCCTACGA	alt_1841_RC	11	8	4	5	13	19	4	5	9	6
TATGCCCGGGCCGTAG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
CCCGCGGTCTTATCTG	alt_1841_RC	17	25	10	19	27	22	25	14	30	18
TTGATGGTTTTTATTC	alt_1841_RC	0	1	0	0	0	0	1	0	3	0
AGGTCAGAGTCCAGTA	alt_1841_RC	24	25	42	19	23	18	24	27	32	27
GCGCGTAGGTGAGGTA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TCTCACGTGTTTCAGA	alt_1841_RC	285	301	346	309	340	248	313	238	344	259
TAGTCGCAATTCCGGG	alt_1841_RC	41	35	59	66	45	31	56	52	44	39
CAGGGTTTCTGTACTT	alt_1841_RC	7	9	8	11	5	4	15	4	9	6
CGATAAAGTATGCCGA	alt_1841_RC	8	14	10	15	10	13	5	13	10	14
CGAGCTTATAGAAGTA	alt_1841_RC	16	28	28	26	39	29	27	19	25	21
CAAAATCTCATGAGAC	alt_1841_RC	7	10	17	10	19	11	17	14	15	5
AATTCATACTGTATGA	alt_1841_RC	23	26	35	15	23	22	27	17	20	16
TCTAATTCAGTCAGTT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TCGGGATCTCGTGGAA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
AAGGGGATGAGTTCTT	alt_1841_RC	31	44	30	25	47	25	43	32	42	21
TTGGTTGCCGACATTA	alt_1841_RC	5	4	2	3	5	3	0	1	0	2
TTTTGCCCACCAGGTG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ATGGACGTCTATTTAA	alt_1841_RC	51	51	70	56	52	49	43	42	86	45
ATACACTTGCCGACAC	ref_1841_RC	138	90	156	151	116	117	92	156	102	128
TTCACTCTTCATCGCA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
TCAGCCTTCAGATCCT	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
ATCTGTTATGTATTGA	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GCTTCCTCGATGGTCA	alt_1841_RC	14	22	22	26	26	18	23	13	20	15
TTGATCCTATGGTCAA	alt_1841_RC	3	2	2	1	3	1	7	3	1	1
GCATGGTTCGGTTTTA	alt_1841_RC	6	3	8	6	3	8	8	11	7	6
GCTTTGCCTCGAGTGG	ref_1841_RC	65	68	69	69	72	68	78	47	66	56
CTCTGCCGGAACTGTA	alt_1841_RC	47	38	56	39	48	33	39	36	55	25
TCCTGAGCCTTGCTCG	alt_1841_RC	0	0	0	0	0	0	0	0	0	0
GGAATGTAAGTGGACT	alt_1841_RC	9	11	7	8	12	4	8	14	5	6
ATTTTGTACGGTAATG	alt_2950_upstream	18	9	19	25	15	13	13	16	15	15
CTGGATGCTCTTTTCG	alt_2950_upstream	30	33	37	38	35	33	28	42	44	38
GTACCTCTGAAGGTCC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGCTTGCGCTGTT	alt_2950_upstream	158	147	144	149	154	138	196	152	160	133
GGGCGTATATAACGGG	alt_2950_upstream	22	10	15	13	10	12	11	13	17	14
CATATACCCGTCTATC	alt_2950_upstream	32	31	28	33	39	31	47	32	30	31
CACCGGACGTGTTCAA	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TAGTAGGAAATATTGG	alt_2950_upstream	45	44	61	43	54	36	52	32	57	31
ATGAAAAGATCCCTCT	alt_2950_upstream	6	6	5	5	7	5	4	11	4	5
TTTCTCCCTTCTTGGG	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
GAATAGCCCCAGTGCG	alt_2950_upstream	49	37	47	30	30	38	39	26	36	24
GTTTGTGGATTTTTAT	alt_2950_upstream	53	57	72	76	71	79	66	61	53	34
CACAACATACGTCCTA	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TACCAGCGTCGGTAAG	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAGCCGCTCCTTA	alt_2950_upstream	96	120	122	135	144	112	139	127	112	98
AGCTTTTTTGTACAAT	alt_2950_upstream	24	21	46	29	20	22	30	20	20	21
GTACTTGCAAGCGGGT	alt_2950_upstream	42	40	43	40	57	40	44	42	41	43
GGCAGAGATAGCTCTA	alt_2950_upstream	14	12	9	8	7	13	6	12	8	4
ATACGGACAATAATCG	alt_2950_upstream	94	61	110	103	71	78	61	91	85	92
AGAGAGAAAATCATGG	alt_2950_upstream	15	21	16	15	15	18	19	18	15	17
TGTCTTTCCGCGGTCC	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TAGCAAATTCTATCAT	alt_2950_upstream	18	6	10	11	12	10	8	8	11	3
GCCATCTTATTCGTCC	alt_2950_upstream	13	11	8	8	12	9	8	7	11	15
TCGTCTAATCTCAACG	alt_2950_upstream	32	35	43	37	38	44	36	31	47	40
CGTCTTAAGGGTTCCT	alt_2950_upstream	27	36	30	27	21	30	31	21	35	19
TACTTCCTTATCTTAT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGACGGCATCCTA	alt_2950_upstream	30	17	25	16	20	13	25	21	25	20
AGGCTATTTTATTATA	alt_2950_upstream	29	22	25	28	18	19	27	16	13	20
AACCCAAGCCAGGACC	alt_2950_upstream	14	14	14	16	14	10	13	10	1	10
TAATTGTCCTAAACAC	alt_2950_upstream	19	18	28	18	17	16	13	13	24	18
CGCTCGTGGAATCAGT	alt_2950_upstream	4	4	6	1	1	5	5	8	8	4
CTGCTATCAATAATAA	alt_2950_upstream	484	400	512	497	387	445	399	421	445	404
TACATGTTTAAATTGC	alt_2950_upstream	22	24	37	34	29	20	22	25	26	26
TCCCGACTCCTATTCT	alt_2950_upstream	14	24	21	18	24	17	27	16	24	10
GCCTATATAATCAACC	alt_2950_upstream	77	116	79	88	92	75	83	77	100	83
TACTGCAGGCACGAGA	ref_2950_upstream	39	29	39	39	29	47	48	33	31	33
ACGCACTAGGCCAAGC	alt_2950_upstream	31	20	27	27	7	33	22	30	24	21
AGATACAGAATAGTGG	ref_2950_upstream	7	1	6	5	5	3	3	1	10	9
ACGATACATGGATTAT	alt_2950_upstream	50	25	54	43	33	51	34	40	35	31
GTAATGGCACACATAA	alt_2950_upstream	30	24	42	31	29	38	33	43	31	29
GTTCTGGGACACAGCC	alt_2950_upstream	5	9	9	7	3	4	7	5	3	2
GGAGAGCGGTTTTTTC	alt_2950_upstream	25	21	50	31	19	20	31	20	32	19
CTTCTAATGCATTGGA	alt_2950_upstream	71	66	62	57	59	52	47	52	52	40
ATTCTCACCGGTTTTG	alt_2950_upstream	6	5	15	7	3	8	9	7	10	6
CTTATTCGAAGGTTAA	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGTTGACTCTAAT	alt_2950_upstream	22	32	20	20	25	12	22	17	21	12
ACACGGTAACGTTCTG	alt_2950_upstream	24	23	23	20	30	17	31	18	36	16
ACTGCCTTCTTGCCGG	alt_2950_upstream	63	58	77	47	72	59	51	64	54	59
AATTGTTCCCCGTGCC	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
ACACACGGTCCGTAAT	alt_2950_upstream	20	12	19	22	9	18	12	16	12	12
TGGTGAATTATTATTC	alt_2950_upstream	243	154	284	268	225	275	211	218	178	221
TGCACGCGTGCCTGTG	alt_2950_upstream	28	28	25	33	36	21	21	22	18	21
GTCCAGGAGCCGGATG	alt_2950_upstream	71	53	81	61	83	70	63	68	56	65
TACAGTATCTCGTCCT	alt_2950_upstream	6	4	7	7	8	6	4	1	3	3
TTACACTATGCTTGGC	alt_2950_upstream	27	29	29	25	25	31	24	17	31	19
TCCACGACCAATCCTT	alt_2950_upstream	8	17	5	11	14	8	16	8	17	7
TAGGCTTACATATATT	alt_2950_upstream	29	25	31	21	33	25	24	21	19	22
CGAATAACGACTCAAG	alt_2950_upstream	31	43	46	32	34	34	37	20	39	35
GTCCCTTTAAAAATTC	alt_2950_upstream	12	10	13	13	18	9	11	12	16	11
TACAGCGTAGAAAGGT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGGTCCATGACTT	alt_2950_upstream	118	116	162	124	165	124	93	128	115	105
GAATCATCTGGTCAAT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TCAATAGCCCTCCAAG	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGCTGCATCTTA	alt_2950_upstream	64	43	69	44	45	41	43	52	56	48
TATGTCATGTCTCTAT	alt_2950_upstream	157	111	158	154	111	137	120	128	118	110
TACATGGGCTCTATTC	alt_2950_upstream	17	15	18	13	15	19	14	16	16	24
TTCGGTATTAGTAGCT	alt_2950_upstream	56	68	60	57	64	47	59	75	80	65
CCGGGTAGTCCCTGTT	alt_2950_upstream	21	20	34	34	26	26	32	29	20	23
CTGCAATAGGTCTAAA	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTCTCCCAGGTAG	alt_2950_upstream	2	19	7	9	13	3	22	8	19	3
TCGGCGTATAGACCAT	alt_2950_upstream	1	1	2	1	0	1	0	3	3	1
CTGAAACATTCTGTTG	alt_2950_upstream	35	51	45	33	25	35	26	35	36	31
TTTGCGGCCGTCGAGT	alt_2950_upstream	75	73	97	95	83	74	97	77	80	70
AATTGTCGGACCCCCA	alt_2950_upstream	46	41	47	31	34	40	39	30	38	42
TGCCGCATTTTCTCAC	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGCGTTCTCGGGC	alt_2950_upstream	13	11	7	9	13	13	17	7	15	8
TTAACGTCAGGGTAAT	ref_2950_upstream	34	32	34	36	24	23	31	34	33	26
TCGCGAGATTAAAAGC	alt_2950_upstream	35	17	33	28	28	36	36	36	30	35
CTGCGTCGGTGTCTTA	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TTGCATTTTCTTAGCC	alt_2950_upstream	30	31	32	20	31	23	29	23	46	23
TTAACATCTTGGGACT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCGCGGCTCGAAC	alt_2950_upstream	60	45	51	34	50	46	52	40	38	39
CGCTTGTTGTTGATGG	alt_2950_upstream	134	121	154	161	115	117	113	135	136	140
GTTATTTGAGTCCATT	alt_2950_upstream	85	72	97	78	103	69	98	75	93	70
TCGCTTTTCCGTTAGG	alt_2950_upstream	84	77	101	100	73	81	78	75	83	90
GATAGCCATGAATAGA	alt_2950_upstream	1	0	7	2	2	2	2	1	5	2
TCCAAAGATATCTGGT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTAGTAGTTTAA	alt_2950_upstream	24	24	44	36	25	25	27	36	34	20
CCCGCTGTGCCTGACA	alt_2950_upstream	8	23	16	18	29	12	33	13	32	13
AAACGTCCTAAGGCTG	alt_2950_upstream	30	13	12	22	19	14	14	19	18	32
ATTTGATTAGTATGTA	alt_2950_upstream	18	5	15	16	8	16	13	15	17	19
CGTCTCGTACGTGACG	alt_2950_upstream	38	48	57	39	39	34	32	37	48	39
CAATGGTATATGACAC	alt_2950_upstream	307	309	337	342	301	285	343	310	377	282
ATCCCATCTGCGACCT	alt_2950_upstream	41	39	48	42	33	32	33	50	42	48
TTCTAATCTTGTTGTA	alt_2950_upstream	11	13	25	15	18	11	12	12	12	21
TCTACTTAGGTGCGAT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
ACGGGACGTCAATGAC	alt_2950_upstream	44	49	59	56	60	58	43	47	49	43
CAGCTAACAGAGTGTT	ref_2950_upstream	23	29	24	23	43	25	21	23	15	15
CACTCTTCGTCTCGCA	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCTTATTGTCAGG	alt_2950_upstream	32	33	48	41	41	33	29	36	38	33
GGAAACTGTTTCTCTA	ref_2950_upstream	89	71	118	103	85	96	105	92	93	79
CCCTTTCGGCCGATCT	alt_2950_upstream	0	0	0	1	1	1	0	1	0	1
GGTCTCATGAACCCAA	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
CATGCGTTACGCGGAA	alt_2950_upstream	7	5	13	14	4	6	10	11	20	7
TATATGGTAAAAATCA	alt_2950_upstream	20	27	29	22	14	11	20	18	16	10
CTGTCGGAACTAGCGT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
GTATTAGAAAGCATCC	alt_2950_upstream	19	20	26	19	23	31	20	26	34	17
TCCCGTAAGCGCACAT	alt_2950_upstream	0	2	2	2	1	0	0	0	1	0
TAACATCTGTTTTGAC	alt_2950_upstream	44	22	53	40	40	34	37	36	25	45
TACGATGCATTAGTTT	alt_2950_upstream	16	11	12	22	30	13	18	15	15	14
CCGCTCGGCCTAGCCT	alt_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGACCGCCATATTGGT	alt_2950_upstream	28	23	39	30	25	31	21	27	11	36
AACTCTTCTAATTAGG	ref_2950_upstream	185	154	216	207	156	158	176	162	207	154
TTTCTACGAGCAAAAC	alt_2950_upstream	2	0	2	1	1	1	0	0	2	1
CTCTTGGAGTTTTACA	alt_854_fdr	13	25	16	17	33	16	40	13	42	14
GGTAGGTGCAGAAACG	alt_854_fdr	43	54	57	40	67	39	71	42	70	43
TGGGTATCATTACATG	alt_854_fdr	39	63	36	42	63	35	67	48	54	41
TTGCCTGGAAGCAGAC	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTCCCACCGGTTA	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
GTATTCGAGTGACTGA	alt_854_fdr	12	8	11	8	12	13	24	10	13	14
ATGTTATCGGAAATTT	alt_854_fdr	17	32	34	23	23	20	31	18	34	20
GGGAACACACGACGAA	alt_854_fdr	22	25	25	20	23	28	20	18	21	16
ACACACACGTAGCGAA	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGCCCTACACCTC	alt_854_fdr	152	213	201	151	231	152	207	146	216	139
GACCGTTTATAGGATT	alt_854_fdr	13	17	9	11	17	11	30	13	21	9
GTAAATCTGCGGATTG	alt_854_fdr	15	23	10	15	17	9	19	18	26	13
ATAGCAATTACGATTA	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
GCTATTGATTTCTGCA	alt_854_fdr	7	9	17	16	5	7	12	15	10	4
TACGCTCTGTGCTCTA	alt_854_fdr	19	53	27	16	39	22	36	31	39	31
GTAATGACGATTTTTT	alt_854_fdr	5	5	4	8	0	4	3	3	2	3
CGCCTTTGTACTTGGT	alt_854_fdr	13	38	22	13	21	19	30	17	27	4
CCCAATGCCCATCCTC	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
ACGTCCGGCTTGGGTG	alt_854_fdr	3	15	3	11	10	9	12	8	6	3
TGTCCTGAGGGCTTAT	alt_854_fdr	56	55	70	42	59	42	74	48	79	56
GTCTCATAACTTTTTT	alt_854_fdr	9	17	23	9	19	22	14	9	18	8
TCCCATGCGTTATTTG	alt_854_fdr	12	7	9	5	8	5	8	15	16	7
CTTCCCTAGACGGGGT	alt_854_fdr	84	151	111	90	134	95	136	69	156	85
TCATAGCGCCGAGCAC	alt_854_fdr	23	18	25	23	30	15	17	15	28	14
GCACTTTCCCATGTTC	alt_854_fdr	0	3	1	4	3	1	0	2	0	6
TTAGCACACATGTTTA	alt_854_fdr	30	36	35	24	38	12	47	18	35	17
ACTGACCACCATTCTC	alt_854_fdr	9	2	7	6	10	10	5	9	8	5
TGTTAGGGCGTTGCCA	alt_854_fdr	3	9	8	6	7	7	4	2	14	6
AACAATCTAGGGTGCG	alt_854_fdr	12	11	14	12	18	9	15	13	12	10
CCTACATTTAAGCTTT	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
ACATAAGCATGATCAT	alt_854_fdr	8	29	18	12	16	12	20	10	17	17
CCAGCACCCTCCAGTA	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCGTTAAAACAGA	alt_854_fdr	11	18	16	6	16	8	12	5	17	9
GCATCATGCGATTTTA	alt_854_fdr	77	92	88	77	93	70	81	78	100	51
CGGTTTCCTCGGTGAG	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
TGCAACAAAGGCCGCA	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCTGGTTTACGAA	alt_854_fdr	12	16	23	18	18	20	6	16	16	12
GTTTTCTTCCCAAGGT	alt_854_fdr	14	16	15	10	13	13	8	15	18	11
AGGAGTGAATTGTGCC	alt_854_fdr	55	59	57	44	51	37	66	35	61	34
CTGTACCATACTAGCG	alt_854_fdr	10	27	11	13	12	11	13	9	11	10
TGTACTCTTCGCACCT	alt_854_fdr	15	23	14	8	9	11	19	5	20	11
TATACATTTCCGAGGC	alt_854_fdr	2	5	7	3	5	3	5	3	6	4
CTACATCTGTCAAATG	alt_854_fdr	5	19	7	2	10	2	8	1	12	3
GTTCATGGTCGGCTTT	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
CCAACTGTGATTGAGT	alt_854_fdr	8	10	5	3	10	11	8	4	14	4
GTTGTAATACTATTAA	alt_854_fdr	13	11	15	7	17	11	12	6	18	13
TGTTCCCCAGTCTGGC	alt_854_fdr	12	23	17	19	8	8	20	11	27	9
CTATTCAAGAGTTTGA	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
CACTTATCTTCGGTTT	alt_854_fdr	109	124	128	106	117	113	137	100	127	93
GCCGTCCCGGAGCCCC	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
TCCATTCGTTTCTGTC	alt_854_fdr	19	22	16	14	8	14	22	20	33	11
AACTTAACTATAGGGC	alt_854_fdr	31	26	31	31	35	20	39	24	49	27
CATGGCTTCTTACTTT	alt_854_fdr	48	43	54	50	39	54	47	51	45	36
GTGGTTTGGCCCCACA	alt_854_fdr	13	17	11	12	10	7	11	15	22	12
GCCTCAGCTGTATCTC	alt_854_fdr	10	10	11	5	16	8	10	1	9	10
CCCTCGTAGTGTGTTA	alt_854_fdr	3	7	3	4	12	3	9	9	12	2
GGGCGAGAGTCCGGCA	alt_854_fdr	3	9	12	9	5	5	5	4	7	2
GCCCGGTCACATGATC	alt_854_fdr	24	16	22	12	28	19	33	16	19	18
GAGGAACGGTCCTCCG	alt_854_fdr	10	27	17	17	23	23	28	24	26	22
AATGTTAATCTTTGGT	alt_854_fdr	14	11	7	13	9	7	13	5	5	5
GCCAGTATTAGTGTGC	alt_854_fdr	105	154	125	113	139	112	162	109	142	101
TGTTCGACAGTGCTGT	alt_854_fdr	42	69	53	46	74	40	65	43	70	31
TTATCTATAAATTAAC	alt_854_fdr	9	9	8	7	12	14	8	9	11	10
TAATTATCGGGCTGAC	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
TCAATCAGGCATGGAT	alt_854_fdr	26	31	34	33	30	26	34	20	31	29
TGACTATGAATAATAC	alt_854_fdr	53	67	50	59	57	37	59	40	75	41
CATACAGCTCTTGAAG	alt_854_fdr	34	38	31	18	35	16	40	21	41	27
CCTCGAATGCTTGATC	alt_854_fdr	11	13	24	12	21	11	12	13	16	18
TGGTGGTGAGTTAACG	alt_854_fdr	39	43	45	37	43	40	52	22	47	36
GTGCTTCGTGCTATTG	alt_854_fdr	56	109	80	51	120	59	117	45	118	49
TTGCTGGCGTATCATG	alt_854_fdr	1	4	1	1	3	0	1	2	0	1
GCACTTGTATATTGAT	alt_854_fdr	30	43	37	27	52	26	45	27	37	29
TTAGCTATTCGTTAGG	alt_854_fdr	47	71	53	51	65	59	57	50	79	49
TTCCAACAGAGCATCG	alt_854_fdr	9	10	3	7	7	4	12	13	5	5
CCGGAACCAGGGTTCT	alt_854_fdr	5	26	3	2	33	5	35	2	26	3
AGTGATTTTAAACTAG	alt_854_fdr	10	19	9	4	15	7	12	14	17	11
ATGTGTAAAAAGTTTG	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGCTCCTGGTTAT	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCTTCGTACCTG	alt_854_fdr	80	112	112	95	110	68	116	51	146	84
AATCCCCTGGTGTCGT	alt_854_fdr	52	73	52	44	84	35	59	42	89	54
TTGTAGTATCGTAGTT	alt_854_fdr	43	48	28	34	46	30	52	39	53	30
TTAGCCGAGATTTTAA	alt_854_fdr	1	0	2	0	0	1	2	1	1	1
CTCGTGTACGATCGGC	alt_854_fdr	13	29	27	16	35	15	20	17	27	21
CCACCTTTAGATTAGA	alt_854_fdr	28	45	43	33	50	32	46	37	51	27
TCAGGGATGGACCTGT	alt_854_fdr	40	66	51	45	72	52	68	52	68	48
TTCCATTTAACTCTTC	alt_854_fdr	8	15	13	8	22	15	29	12	21	12
CCTGTGATCTGAGCGC	alt_854_fdr	6	7	3	4	10	2	3	5	9	6
TGTTCGCTGATAGTAG	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
CGTTACCCTGAGCCCT	alt_854_fdr	15	36	14	16	16	19	20	21	28	11
CGCTGGTCTTTGTCTA	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
CGATGCCTAGCACATT	alt_854_fdr	27	32	28	17	32	15	29	24	28	20
GCCAATGTATGCCAGT	alt_854_fdr	111	138	126	126	147	114	176	99	147	108
GCGGAACCTTGGTATA	alt_854_fdr	42	44	46	45	39	38	61	36	40	27
GTAATCGGGGGTTAAT	alt_854_fdr	47	83	69	30	78	42	52	38	71	43
AAGTGTTATTTTCTCG	alt_854_fdr	15	17	14	15	26	16	16	22	17	10
TAGGCTCAGTCCTCCA	alt_854_fdr	1	4	0	1	4	0	0	0	2	1
ACCCAGTTTACCCACC	alt_854_fdr	14	26	18	7	20	16	16	16	34	14
CTTACTCTTCGAGTGC	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTGTGAGTCTAC	alt_854_fdr	1	0	0	3	1	2	3	0	1	0
GCTTGGGTTGGGATCC	alt_854_fdr	103	152	135	105	155	95	136	87	163	89
CGCTGTCCCTGTCAAT	alt_854_fdr	39	49	34	31	53	25	64	44	59	32
TTCGAGTAGCGCACTC	alt_854_fdr	17	16	17	18	17	11	22	8	17	4
CTAAGTTCTCGAGCGA	alt_854_fdr	15	15	12	7	15	6	11	9	18	3
GAGAATTTCATTGATC	alt_854_fdr	8	17	15	10	16	14	16	11	22	14
GCATTGAAGAGTTCTG	alt_854_fdr	71	63	67	47	93	49	67	47	64	40
CTCCAGCGCTATAACA	alt_854_fdr	33	50	46	43	78	34	77	24	85	32
CCTTAGCACGGCCACC	alt_854_fdr	23	15	26	19	19	17	33	15	33	16
AATAACCTTCTTTTCT	alt_854_fdr	41	51	74	48	45	44	70	50	51	22
TTAGCGTTTATATGCA	alt_854_fdr	18	27	11	21	32	25	34	15	28	10
TTGTCTAGTTCTAGTT	alt_854_fdr	15	18	3	5	10	5	8	4	12	7
TGCCTGCGTTCATGTG	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCTTATACATCAA	alt_854_fdr	15	22	21	18	27	14	25	15	25	11
GATCCTTTGGACCTGT	alt_854_fdr	23	36	35	33	41	31	40	37	38	43
ACCCTGCAGACTATTT	alt_854_fdr	20	24	12	23	31	8	31	14	35	17
CAAGCTTTCTCTCCGA	alt_854_fdr	5	18	8	15	22	8	11	12	11	4
TGTCGCTTGCTCGTAT	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
CTTAATGCTGCTTTCG	alt_854_fdr	1	0	2	0	1	0	1	1	1	1
TTCGATGGGGCAAGGG	alt_854_fdr	24	41	37	29	43	30	43	30	52	22
CAACTTTTCTGCCTTG	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
GGGACTTAATCCTCTG	alt_854_fdr	40	45	53	36	51	34	50	31	51	24
GGTATGTCATTGTCTT	alt_854_fdr	65	105	121	84	116	97	144	84	102	93
GCATCGGTCAGGACTA	alt_854_fdr	33	47	32	42	48	29	59	37	44	31
TTATGTCATGTCGAAT	alt_854_fdr	12	19	31	21	28	19	32	23	32	20
CCATTTTGCGGGCTCT	alt_854_fdr	0	0	0	0	0	0	0	0	0	0
AAGGTTCACGTGATAG	ref_4632_RC	12	12	14	15	17	5	9	13	9	11
CTTAGGTAATGCTTCT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
CTTTATGTTCGATATT	ref_4632_RC	6	4	10	8	6	3	4	7	9	5
GTTTCCCATTTAACTA	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
CGCGTCCGGATTACGA	ref_4632_RC	16	5	14	15	15	7	13	14	11	10
TCGACTTTTGGGGTCG	ref_4632_RC	10	4	10	13	9	5	4	7	15	15
GGGTTACGTTGCGCGA	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
AGATATACTCTGCTAC	ref_4632_RC	35	42	52	48	45	72	51	40	48	36
GGTATAATGTGGCGGC	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
GCATTCTGGTCTACCT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TTAGGTTGTAGGCCCG	ref_4632_RC	32	29	34	29	23	25	26	24	39	19
GTGATCTTTTCGGTTT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
AGTGGCAGGTATCTCA	ref_4632_RC	189	261	293	266	247	226	259	237	252	209
GGCCATTCAGTTGTTT	ref_4632_RC	23	50	43	26	33	29	48	19	50	27
GCGGGGTCCCATTCCC	ref_4632_RC	4	5	5	1	4	1	7	5	3	2
CGTCGGTTTCTATGAT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTTCTTGGGTTA	ref_4632_RC	19	26	29	28	19	35	20	18	31	23
CAGGGATTACGTAGAC	ref_4632_RC	26	35	40	19	30	20	39	28	23	24
GTAGCGTGTCGCGCTT	ref_4632_RC	0	0	0	1	0	1	0	0	0	1
GTTGTTATTGTACGGG	ref_4632_RC	5	4	6	2	2	5	6	8	8	5
CAAGCTTCCCGATGTG	ref_4632_RC	1	1	2	2	4	0	3	1	3	2
GATTTAGCCCGCGGAG	ref_4632_RC	27	46	32	35	34	39	49	31	37	26
ACTCTCACCAGAACAT	ref_4632_RC	46	60	67	48	76	49	70	62	90	45
TTTCGACGCTAGTCCG	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TTTAGCGGTACTGCTG	ref_4632_RC	9	18	19	11	9	13	19	10	9	11
TATTACGATAGGCATT	ref_4632_RC	106	119	140	120	126	88	117	119	138	107
CTAGAGTGTGTCGACC	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
ATAACTGTAGTCGATC	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
ACTGATTGTGCTTCAA	ref_4632_RC	119	150	140	135	160	122	166	120	184	126
TCGGTCTATATCTGTG	alt_4632_RC	10	17	11	6	14	10	17	5	12	10
TGTTCCTTCAAGCGTT	ref_4632_RC	14	13	14	16	9	11	9	13	9	10
TCCATACATAGGGGTT	ref_4632_RC	16	21	18	15	19	13	23	21	23	7
CCCATAAGTTTTGTAG	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
AACGTATTGGGAAAAA	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TGATGCGAAACTGTTC	ref_4632_RC	8	8	3	6	2	2	5	2	5	5
AATATGAACTGTCCCT	ref_4632_RC	24	37	24	16	23	21	27	16	30	12
CGTTTTTTGTAATCGA	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
ACTATAGTAGGTTCAC	ref_4632_RC	145	175	169	144	206	148	204	118	213	130
TGTGGCCTCATTCCTT	ref_4632_RC	24	30	33	23	28	21	39	14	33	21
TTCGTATTCCTCGTTG	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TAATCTATGTTCGCTG	ref_4632_RC	6	16	15	9	14	7	12	5	14	9
TCTTCGCTTTACTCGG	ref_4632_RC	33	37	47	35	39	26	41	31	52	27
GCAATACTTCGTAGAT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
CAAACACGAGCTCGTG	ref_4632_RC	18	25	21	16	15	16	12	18	17	17
GTGGGGTGATGCAGCG	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
GAGTGGCTTCTCAACC	ref_4632_RC	50	64	51	51	45	52	59	64	76	47
GTGTATCCGCTTTCCC	ref_4632_RC	20	44	34	32	45	25	47	26	43	21
TGGACTAGCAGTGTGC	ref_4632_RC	11	12	13	19	19	11	15	15	14	15
TTCGTCCGCGGAATAG	ref_4632_RC	13	7	18	14	14	6	20	12	19	12
GGGACATAATAACAAC	ref_4632_RC	19	17	17	24	18	12	24	22	18	16
TCGTGCAATCATCTAT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TGTTCTAATAACAGTT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
GGTGACTCCACAGAAG	ref_4632_RC	27	23	25	26	20	13	22	17	25	16
CGTCAAACAGATAGCC	ref_4632_RC	10	10	15	16	14	10	15	20	17	12
CTCTTGACTGTACACG	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
GCGTGGGTTCATACTA	ref_4632_RC	19	18	23	28	36	20	37	21	34	17
TCGAGCAAAAATCATA	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TGAGGGGCGGGAACAT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
AACAGTGGTAGATGAG	ref_4632_RC	31	24	29	24	25	21	30	27	35	15
ACCGATACCTTCTTAA	ref_4632_RC	5	13	3	7	14	4	8	1	14	3
TTTTAGTTGTCGCCTC	ref_4632_RC	25	45	35	34	40	46	42	38	35	33
ATATCACCTGCATGTT	ref_4632_RC	22	24	33	16	24	23	33	19	33	16
TCCCTCTGTCCGTTCT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
GAACCTATTTACGGAC	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGCAGGGCTTGG	ref_4632_RC	0	1	1	0	0	1	5	3	1	3
GTGGCAGATGGTTTAG	ref_4632_RC	9	20	25	17	14	9	10	14	18	10
CGGATTATCTATAGGG	ref_4632_RC	55	57	70	52	64	55	63	60	74	48
GACAGTGCCTCGGCTA	ref_4632_RC	112	154	157	126	125	79	141	116	137	111
AGTTCCGCGCCACCAC	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
AGTGACCCCTGTTCTG	ref_4632_RC	7	8	10	10	8	9	7	3	7	5
TTTGAGAGCTTCTGCT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TTGTTCTTGCGTATAT	ref_4632_RC	123	135	148	96	104	127	146	96	145	99
GTTGACCTTTCGTGTA	ref_4632_RC	65	73	93	81	89	76	94	63	87	75
TGACCCGTCTAATCAT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
ATTTATCTAGTTTTTG	ref_4632_RC	13	8	17	12	14	7	9	21	13	15
TGGACCCAGCCAGAGG	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
TGGCTTCCTTACGTTT	ref_4632_RC	6	9	14	11	8	10	14	11	16	12
ATTCGTAGTCTATCAC	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
CTCGCGCCGCGGGTGA	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
GCTACTAAGTGGGGAT	ref_4632_RC	38	71	53	50	52	52	100	50	84	41
CTGAACGAATTCCGTG	ref_4632_RC	70	79	66	77	102	50	86	45	80	53
TTACTAGGGTCGCTGT	ref_4632_RC	31	41	46	42	39	34	47	41	46	28
CGTCGCCACGACTGGT	ref_4632_RC	36	40	46	37	35	38	50	35	54	47
ACTTAATAATAGTGGG	ref_4632_RC	4	8	4	7	5	3	6	4	3	3
CCATGTTTTGTTGTTT	ref_4632_RC	0	0	0	0	0	0	0	0	0	0
AGCCAATCATTTGTGG	ref_4632_RC	6	10	6	7	7	2	13	11	17	0
CTTAAGCGCCAGGAAT	ref_4632_RC	8	11	22	7	15	4	12	10	12	4
AAGAATGTCTATAGAA	ref_4632_RC	12	20	18	30	17	15	24	26	25	18
AGTACATTCACAAGGG	ref_4632_RC	156	192	172	137	140	117	156	145	191	132
ATCGTGAATTAAGGCT	ref_4632_RC	10	10	4	10	8	6	7	15	10	8
GTGGTTACCTCTATGG	ref_4632_RC	26	34	27	22	26	22	36	21	30	8
ATGCGCCGTTCTTGTC	ref_4632_RC	11	20	12	5	27	9	27	15	20	8
TGGTTCTGGGGCTTTT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CTGATACTCAAGCTCT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTGGTATCGATTT	alt_2605_upstream	33	19	35	29	9	28	27	25	20	27
TTCCAGTAACCTACCA	alt_2605_upstream	101	68	92	85	50	74	68	79	70	75
GTCAGTGTGCTTCCAG	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTTCTAAGCAGTT	alt_2605_upstream	30	21	31	20	28	34	34	30	28	39
CATCTGTACTAATGTT	alt_2605_upstream	3	4	10	2	1	3	2	2	3	3
CCCGGCGGACGGCTTT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTCACTTTCTTCACTG	alt_2605_upstream	54	42	69	58	29	53	30	45	37	47
TCATGGGCGCACATCG	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGTAATAGGCCCT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGATGTTCTGGTA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGTTCTTTGTTAT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CCAGCTTTTAGTATGT	alt_2605_upstream	48	45	70	76	37	46	57	47	67	47
TCTAGCATCTAATTTC	alt_2605_upstream	33	50	27	33	30	41	30	29	39	34
CCACTTGCCGGGATGT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TCACGAGCCCTTTTGT	alt_2605_upstream	71	48	103	89	37	73	51	58	54	64
GATTTTCGGTTCCAGA	alt_2605_upstream	49	41	70	52	27	34	37	38	34	39
ATCCGCCCTCGTGCCT	alt_2605_upstream	89	56	94	65	71	75	50	76	69	75
GTAATTCGCCTGTATC	alt_2605_upstream	6	15	14	22	8	9	16	12	5	9
TCATCGAACAGATATT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTATATCGTTGAG	alt_2605_upstream	63	27	65	74	29	49	34	50	34	45
ATTTGTTTCTGCAGCT	alt_2605_upstream	157	134	222	174	85	175	116	162	115	143
GATATCTTGTTAAGCC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTAGGGCGCCCAC	alt_2605_upstream	152	89	161	168	96	150	93	133	80	116
ACGCACTGAGGAATGT	alt_2605_upstream	80	49	71	80	38	59	55	60	49	77
AAGAAACTCCCAAAAT	alt_2605_upstream	135	118	142	152	94	116	97	124	106	102
GACCGCTGCCTCTGTA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTCGCCCCCCGTCTCG	alt_2605_upstream	7	29	5	4	35	4	40	5	26	5
AGGTCTCGTTTTTTGT	alt_2605_upstream	71	35	74	74	42	64	35	59	50	48
TCGAGTTTTCCTTCTA	alt_2605_upstream	9	7	10	7	6	8	16	9	2	9
CGTACGGTTCAAGAAC	alt_2605_upstream	85	58	118	84	50	59	61	88	77	68
CTAGGAACCATTTGCC	alt_2605_upstream	22	22	33	25	23	32	25	22	21	29
CGTACTAGGTGTCTAA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TATTTATTTGGTCGCA	alt_2605_upstream	69	49	91	50	34	69	53	40	55	51
TGTCGCGACGATAGAC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCTTTCTTCCACC	alt_2605_upstream	41	19	55	25	27	42	17	32	21	33
CCTGTCAATTGGCGGT	alt_2605_upstream	47	33	79	52	32	38	45	37	38	30
CCTATTGATAAATTAC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
ACTGACCCTGTGTGGA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGTTACTTGATAC	alt_2605_upstream	17	15	20	18	10	23	8	14	9	7
TACGCTGGCTACAACT	alt_2605_upstream	15	14	29	20	25	26	15	21	22	17
CGCTACTTCGTGGTTT	alt_2605_upstream	8	9	13	10	12	9	13	15	13	18
GGGTCGGGTGCTGATT	alt_2605_upstream	26	33	28	35	26	20	35	28	38	22
TTTCCTCATCCGACTT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GGGCATGAGTTTGCGC	alt_2605_upstream	40	38	71	60	38	51	45	69	45	41
ATGTTGTTTCGTGGTT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TCTATCACCTCCAACC	alt_2605_upstream	27	25	43	30	26	27	42	27	23	25
TTCGACCGAATACGAA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGGTTTTGCAGGG	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAATTGCTTCCCA	alt_2605_upstream	8	10	13	7	8	14	8	8	5	15
CCATCTTCTTCACCGG	alt_2605_upstream	85	49	91	66	36	60	43	73	40	68
GAAGGGCGATGGCAAC	alt_2605_upstream	10	6	18	13	4	12	8	10	15	14
ATTTTGCTGTACGGCA	alt_2605_upstream	9	11	8	9	4	17	9	13	10	10
CCAAGTGGGTATGATC	alt_2605_upstream	84	55	90	92	57	76	61	74	71	87
CACAATAGGACCCCCC	alt_2605_upstream	151	90	178	146	92	133	82	142	89	152
CGTTAACCGTCTAGAC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
ACGAAGCAATGATGAA	alt_2605_upstream	37	30	65	56	28	41	28	48	26	27
GTAATAGAAAATCTTT	alt_2605_upstream	19	18	22	30	11	27	21	18	15	25
CCATATGAGCCTTAGG	alt_2605_upstream	92	99	135	129	123	103	110	114	128	95
TTACAACAATAGCGGG	alt_2605_upstream	58	40	66	58	37	54	43	58	36	50
GTTCGCTTAACTCACG	alt_2605_upstream	65	39	92	60	49	81	44	86	36	51
ACCTTTGTCTGCCCGC	alt_2605_upstream	16	16	20	20	10	17	12	17	9	19
CACTGGTATTTGGTCG	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTGCGCCATAAGC	alt_2605_upstream	16	19	16	10	12	13	11	8	6	5
TGGCTCTCAGACCGGA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
ATATTGGATTGAGTAT	alt_2605_upstream	41	28	52	37	29	27	32	32	29	27
TATAACACAGACTGGT	alt_2605_upstream	54	42	67	61	49	47	33	50	42	52
GACGTAGTATGCTGAC	alt_2605_upstream	8	3	10	12	10	8	7	7	5	8
CTAGCCTCTGCGTAAC	alt_2605_upstream	31	41	48	60	17	45	36	41	29	27
AGTTTCCTTATGACAG	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CCTCAATCGTGACAAC	alt_2605_upstream	29	14	21	30	13	22	13	26	16	27
CTGCCAAGCGAAACAT	alt_2605_upstream	2	6	2	5	2	4	4	6	1	2
CGCATTTCAGAGAGAA	alt_2605_upstream	31	21	33	29	25	30	32	26	24	31
TCATGAAAATCCAGCC	alt_2605_upstream	11	7	15	14	3	9	6	7	7	5
TTATCTATCTCACCAC	alt_2605_upstream	32	8	39	34	12	14	18	18	20	33
TATGCGTATTTAGAGC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
AACTGGGGTAGAGTCT	alt_2605_upstream	49	48	97	63	46	68	67	55	39	90
TAAAAGGCCTCTACCT	alt_2605_upstream	148	71	160	171	81	134	90	142	108	112
TGCGTTTGTCTCTTTC	alt_2605_upstream	31	19	33	32	19	36	23	28	11	32
TACGGACCCTTCCTGC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTGGAAACTTTCT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGGAATGGGGCAT	alt_2605_upstream	12	7	10	12	10	9	5	15	5	12
GGAAGGGTGCATAGCC	alt_2605_upstream	34	13	37	29	22	24	18	38	14	18
CGGATATTTAGTATTT	alt_2605_upstream	109	62	119	95	52	85	66	90	65	80
CTCCGGCCCCCAACGG	alt_2605_upstream	19	12	26	21	6	13	14	19	12	12
GCCCCTTCGCACCATG	alt_2605_upstream	8	5	13	9	9	12	4	11	8	6
CGCCCTCAGCGTCGTT	alt_2605_upstream	59	28	65	60	32	47	36	38	20	35
CACTACTCGTGGTTTC	alt_2605_upstream	1	0	0	0	0	0	0	0	1	3
CGTGATAGTAATTCAC	alt_2605_upstream	13	6	11	4	4	6	5	3	3	8
TTATGTGGCGCTTGTT	alt_2605_upstream	50	36	58	46	22	38	31	70	24	42
ACGAATCCGGTAGCCG	alt_2605_upstream	394	320	501	474	331	400	390	443	358	364
CACAATAGGCCCCCCC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACATGCGTTTGG	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGCATCACTTATT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GATAGCTCTAGATTCC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCCGAGCAATGCA	ref_2605_upstream	30	11	14	27	11	13	10	19	9	14
TAACTTGTAGTCCCTT	alt_2605_upstream	38	24	35	21	17	34	20	27	18	18
TGTACAGGGCGAATTC	alt_2605_upstream	57	42	84	77	39	69	41	65	43	59
CCTTTTCACAGCAAAG	alt_2605_upstream	34	15	58	30	47	33	17	31	20	25
CAACTTACCTCAGCTG	alt_2605_upstream	0	11	0	4	12	4	12	0	10	2
TGGAAACCACAACAGG	alt_2605_upstream	96	90	113	137	105	97	61	102	93	74
ACGCAACTCAGAAATA	alt_2605_upstream	42	32	59	60	27	43	31	28	25	43
TTTGTTGGGTGCTTTT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGCTATATGGTGAATT	alt_2605_upstream	22	14	23	16	10	18	14	10	20	21
TACAATTTTATTTAAA	alt_2605_upstream	82	59	76	74	49	72	52	71	57	56
TACCTCGGAGTATACG	alt_2605_upstream	56	55	56	54	37	38	37	52	42	32
GCCTTGTGTGGAACTT	alt_2605_upstream	7	10	9	12	7	15	9	9	13	10
ACACACAAAACAAAAC	alt_2605_upstream	40	30	65	54	46	45	37	54	43	43
CATGACTAGAGTTATG	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTCCATCTTGTG	alt_2605_upstream	20	8	19	10	6	7	10	15	15	18
ATCACTAACGGCAGAT	alt_2605_upstream	76	38	113	78	35	58	43	93	45	85
GGTACGCTTTTTTAGC	alt_2605_upstream	74	39	62	70	48	61	52	63	40	57
ATTTGGCTTTAAACCG	alt_2605_upstream	53	40	66	73	44	57	47	68	61	66
ACGCAATTTATATGAT	alt_2605_upstream	63	38	102	78	59	85	49	79	60	65
GATTGGCCGTTGCAAT	alt_2605_upstream	59	44	97	57	31	50	30	42	50	52
GAGACTTTAGCTGAAT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACCATAGGTACC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTTGACCCTTCGC	alt_2605_upstream	9	16	9	11	7	3	10	7	15	4
TTTCACCTCGAGAGTA	alt_2605_upstream	38	21	38	38	17	19	30	35	17	37
CCCAATAAGTGAGCGT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CAATTTACGTATTTGT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GCGTAGTATCAGTATA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TCAAATGTAATCTAGT	alt_2605_upstream	17	7	16	17	7	10	19	24	12	8
TTCAGCTGTGATGTAA	alt_2605_upstream	35	17	48	33	21	41	21	17	11	29
CTCATCTGCATGTCAA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTACCTCTATTGACCA	alt_2605_upstream	15	12	12	16	19	14	20	13	15	8
ATGTGTAGGTACCAGT	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTAGCGGGAACGC	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
CCACAGAGTTGATGCA	alt_2605_upstream	42	46	61	67	44	67	45	34	66	56
TTTAGTTTCATCTTAT	alt_2605_upstream	9	5	14	9	8	6	0	7	9	2
TCCAGTCAGCGTCTAC	alt_2605_upstream	20	9	23	13	10	16	11	13	10	10
TAAAGGCACTCTTGAA	alt_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTCAACATAGTTACAC	alt_1720_reverse	69	55	61	51	72	48	87	48	69	54
TACGTGCACTTTGCTT	alt_1720_reverse	29	28	34	45	37	41	35	31	43	24
TCTCGGTTTCCAGATA	alt_1720_reverse	39	48	66	69	48	54	57	46	61	53
GTGGTCAGCCTGGCTC	alt_1720_reverse	8	15	9	7	10	7	12	7	12	3
TATCATTGTACTAGAC	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
ACCGGCGCTTGAACCT	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
CAGCCTCCATCGAGCG	ref_1720_reverse	46	43	53	39	36	27	36	56	37	37
CACAATGAGTTCGGTT	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
GAAAGCGGAGACCAAG	alt_1720_reverse	124	117	171	120	122	125	131	139	131	141
CTATCATGTAAATCTC	alt_1720_reverse	134	142	191	136	149	153	157	144	129	121
CCTTGATGTTATGGCC	alt_1720_reverse	70	53	87	74	69	55	58	70	79	62
TTCTACCTGTGCTTAC	alt_1720_reverse	21	14	28	18	23	15	17	18	24	12
GCCTGTGGATTTTGTC	alt_1720_reverse	50	57	78	49	60	74	58	58	69	44
ATTTACCGTGTGAGCG	alt_1720_reverse	27	20	20	23	32	20	23	13	25	22
GACACTACCGGCACTC	alt_1720_reverse	22	28	29	14	20	20	26	21	21	20
GTCATTTGCTTGCCTT	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
GGAGATCGAGTCCTGA	alt_1720_reverse	70	53	74	85	60	50	54	64	74	66
CGTGGGGTGCACGTCG	alt_1720_reverse	10	10	21	12	9	16	9	7	4	11
TGTTGTGGAGTAACTT	alt_1720_reverse	53	59	90	60	53	75	56	54	79	70
ACCGCTTGTTAATGTT	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCTCCTTGGCGTT	alt_1720_reverse	20	28	34	20	27	24	32	31	23	14
TTGCGCGATGTGAGTG	alt_1720_reverse	36	23	33	29	34	23	29	28	54	20
AGAGACCCTCCTAACG	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
GATAGCCTTATATACT	alt_1720_reverse	42	42	36	26	45	30	38	40	33	27
ATTGCAGGTCACTTAC	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCGTGTTTTTAAG	alt_1720_reverse	61	51	56	51	64	42	56	50	68	41
TGTTATCAGGGCCAAG	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
TATCATGAAGGCTTAC	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
CACCTATTATGGAGCT	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTTAAATCGGTCT	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
GATGGATGTGTGGCGA	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGACTCAACTTCA	alt_1720_reverse	11	23	31	13	24	11	26	20	25	14
GTATGCATTTCCTAAG	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
GCGATAAACTAAGCAC	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGCGTTGTGATTG	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
TGACCTTTCGATACTC	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTCTATTTTGGCG	alt_1720_reverse	52	52	48	46	48	36	49	48	50	42
CCATATTGTTAGTTGC	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
CTCCACGTCGATCATA	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCGGCCGTCGGCA	alt_1720_reverse	18	20	35	29	34	35	21	27	43	27
TTTTTGAGCATTATTT	alt_1720_reverse	10	10	9	4	3	10	9	8	12	9
AGCGTAGCCTTTTGGT	alt_1720_reverse	35	33	54	24	20	39	26	25	38	34
TGGAATGGATTTCAAG	alt_1720_reverse	53	38	53	33	42	56	44	40	41	44
CTAGTGTAGTTTTGTA	alt_1720_reverse	9	11	7	11	8	10	11	6	8	13
ACCTAGGATCTAATTT	alt_1720_reverse	118	118	118	103	125	111	95	125	92	89
GTTAGCTTGACTGTGC	alt_1720_reverse	12	21	7	13	28	22	21	15	34	18
GGTCACGCATCTGTGC	alt_1720_reverse	0	0	0	0	0	0	0	0	0	0
AGGAAGTGTATCGTTT	ref_5990_new	84	95	106	112	110	95	105	97	98	61
CTTAACAGTTTTGATG	ref_5990_new	20	24	44	26	45	37	31	30	24	17
GATGATTGGATCCTGT	ref_5990_new	51	45	58	48	67	53	70	48	53	49
CTTCGCGGGCGTGGGT	ref_5990_new	42	37	44	37	60	45	47	28	47	41
GTTTACGGTGCGTTTA	ref_5990_new	1	2	2	0	3	0	0	0	4	4
TATAGCCGGAGTTAGC	ref_5990_new	1	4	2	4	3	1	1	2	2	0
AGTTTGTCGTGAAAAA	ref_5990_new	26	7	19	12	19	7	29	8	16	6
TAGTAGAGCGCCACGG	ref_5990_new	109	154	145	106	101	97	143	91	129	93
GAATACTTTGTCACTG	ref_5990_new	0	0	0	0	0	0	0	0	0	0
TTCAAATATGGTGTCC	ref_5990_new	524	533	653	557	592	562	534	547	519	512
GTCTGGACCGGCGCCT	ref_5990_new	26	24	24	22	35	15	21	17	46	13
CTGTATCGATTCAGCG	ref_5990_new	15	19	17	12	16	18	12	13	15	14
TTAGGACTGTCCCGCA	ref_5990_new	7	5	6	4	4	3	6	4	7	6
TACAAATATGGTGTCC	ref_5990_new	0	0	0	0	0	0	0	0	0	0
TCTAGTTATAATTCGC	ref_5990_new	104	108	107	104	118	79	125	84	134	101
TTGAGGTCTGCGGTGT	ref_5990_new	10	8	8	14	3	5	4	8	11	6
ACCTACTAATATTCAG	ref_5990_new	80	106	98	88	114	63	123	69	114	58
TCATCATGGTACAGCA	ref_5990_new	13	9	39	19	23	28	18	15	30	11
GGCGAGTTCCGGGAGA	ref_5990_new	0	0	0	0	0	0	0	0	0	0
TGGCTTGGTATACCGA	ref_5990_new	23	29	27	31	35	25	36	31	35	26
TCAGTTCGCAACCATA	ref_5990_new	46	75	57	39	74	39	74	58	77	49
GAGGTATTCATCGAGG	ref_5990_new	176	240	205	174	220	179	222	154	215	160
CCTTATATCATGTTAC	ref_5990_new	115	158	126	107	148	97	164	111	164	119
AGCGTCCACCTAGTGG	ref_5990_new	5	6	4	10	12	3	8	12	4	3
CTGTATGACATGTAGG	ref_5990_new	0	0	0	0	0	0	0	0	0	0
CACATAATATTGCTTT	ref_5990_new	21	23	32	23	31	33	33	21	35	23
AGAATGTCAGAGGCAC	ref_5990_new	0	0	0	0	0	0	0	0	0	0
TTCGGGGTCGACCAGA	ref_5990_new	30	48	41	32	37	21	36	37	57	21
ACGAGTTGCGCACATT	ref_5990_new	132	120	109	118	157	104	164	96	126	106
AGGGCGGTCACCGCAT	ref_5990_new	0	0	0	0	0	0	0	0	0	0
CCTTCTGCGTATGAAT	ref_5990_new	0	0	0	0	0	0	0	0	0	0
TGCTTACCGTCGAGTT	ref_5990_new	25	58	30	18	47	25	52	25	55	19
TACGGCATTGGTTCAA	ref_5990_new	1	8	4	12	5	2	11	6	6	4
GCCTGTGGTCGGTTAC	ref_5990_new	16	17	18	8	25	16	22	15	28	17
GCCTGAAAATCAAGTA	ref_5990_new	10	14	12	9	15	11	17	10	15	9
GGCGTTGCCATAACGC	alt_5990_new	74	109	100	93	122	87	117	99	120	82
GCTTGCTACAAGATGT	ref_5990_new	72	96	81	64	91	56	92	60	79	87
TGATGGATAAAGCTAT	ref_5990_new	151	230	217	152	220	193	241	175	217	139
TCCAACGAATACACAT	ref_5990_new	1	8	5	5	8	2	4	1	4	4
CTTTTAGCTTCTGTAA	ref_5990_new	0	0	0	0	0	0	0	0	0	0
CCAGCCTAACTGATTA	ref_5990_new	0	10	3	1	24	0	20	1	15	1
TCCTGAAAACAATATC	ref_5990_new	68	116	108	97	132	73	98	94	98	72
ATGACTTTATTATCTG	ref_5990_new	0	0	0	0	0	0	0	0	0	0
TTCTAGTACCAGCATA	ref_5990_new	76	100	86	66	107	92	110	52	101	73
TCATGTGGTTTTCACT	ref_5990_new	8	20	10	6	7	16	7	9	8	1
ATTTGATCGTTTTTGG	ref_5990_new	46	51	34	47	55	43	49	44	46	37
TCCATTACATATCACT	ref_5990_new	49	55	68	39	65	49	92	42	91	35
CACGGACATAAACATG	ref_5990_new	88	109	101	110	110	114	126	95	100	92
GGATCGCAACCATTAG	ref_5990_new	82	102	98	100	113	99	117	68	139	70
GCTTTACGGCAGATAT	ref_5990_new	0	0	0	0	0	0	0	0	0	0
CTTGAACCATACGCCA	ref_5990_new	29	40	27	22	31	17	45	30	55	26
ACAGACGAAGCGTCAG	ref_5990_new	0	0	0	0	0	0	0	0	0	0
GTGCAGCGTAGTTTGG	ref_5990_new	3	3	10	6	6	1	7	1	5	4
CGGCTCGGATCCTGTA	ref_5990_new	0	0	0	0	0	0	0	0	0	0
GCAGTTTTAATAGTAG	ref_5990_new	44	48	34	36	57	36	52	42	49	41
CAACTCTCTACACATC	ref_5990_new	2	3	4	1	1	3	0	1	7	4
AGCGGACTTTTGGAGA	ref_5990_new	126	129	126	93	123	98	136	96	149	101
CAGTGTTCGCCCTACC	alt_5990_new	38	56	48	34	48	52	53	45	47	30
TACACTATATTGTGAC	ref_5990_new	8	19	22	8	29	9	28	13	28	5
TATGAGTTGATATTGT	ref_5990_new	0	0	0	0	0	0	0	0	0	0
AATTCCGTTTACGTTG	ref_5990_new	0	0	0	0	0	0	0	0	0	0
CACAGAACCGGACAGG	ref_5990_new	19	8	27	17	18	31	11	9	15	15
TAGTTTTTTATGATCT	ref_5990_new	7	3	3	2	4	1	1	2	7	4
GGAGGACGGCATACCC	ref_5990_new	0	0	0	0	0	0	0	0	0	0
GGAATGAGTTGTCGTC	ref_5990_new	175	197	198	135	232	164	220	145	196	143
AGTGGTCGTATCATTT	ref_5990_new	10	13	8	13	12	6	23	7	12	14
TGGGGCTCCCGGTCGC	alt_5990_new	120	147	115	89	138	95	105	116	138	95
TCGATCTTTCAGAGGT	ref_5990_new	13	14	27	9	9	20	15	17	12	14
AGGGCCCCTTCAAGTC	ref_5990_new	28	35	32	17	29	23	26	26	30	23
CTGGTCATGTTTCCTT	ref_5990_new	36	44	41	40	48	33	37	40	43	28
ACTTAACGCTTGGCTT	ref_5990_new	17	29	26	38	23	23	10	17	32	13
GCTGGCTTTCTCTTTC	ref_5990_new	0	0	4	1	0	0	1	1	2	1
AAAGGCTATCTGCTGT	ref_5990_new	0	0	0	0	0	0	0	0	0	0
GAGGTACATCTTACCC	ref_5990_new	7	26	6	3	12	6	14	5	27	4
TACTCCATCCGTACAA	ref_5990_new	0	0	0	0	0	0	0	0	0	0
GCTTTATTTGCGTCGG	ref_5990_new	33	64	58	42	44	26	47	33	49	31
TTAAGTCTAAGTTGTC	ref_5990_new	0	0	0	0	0	0	0	0	0	0
CCAGTGTCGTTGGTGT	ref_5990_new	0	0	0	0	0	0	0	0	0	0
ATTCAACGTATGCATA	ref_5990_new	118	153	151	126	160	110	162	103	168	124
CTTATAGGACGCGGAT	ref_5990_new	61	81	69	56	81	73	75	67	89	52
ATTCTTCTAGCTGTAG	ref_5990_new	0	0	0	0	0	0	0	0	0	0
TCCTCTAGTCCACCTC	ref_5990_new	6	9	6	15	8	8	7	8	7	6
AGTCCGGCTCTGTAAC	ref_5990_new	7	9	7	10	17	14	9	16	12	6
TTAGACAAAGTTTATC	ref_5990_new	11	23	24	9	11	16	19	14	30	13
TGTCTAATAAGCGGAT	ref_5990_new	13	15	23	12	19	12	19	14	28	10
GGCAATTTTGGGCTCC	ref_5990_new	10	15	8	10	16	12	18	11	16	4
ATTACCTTGATTCAGT	ref_5990_new	55	56	43	56	69	35	69	40	70	43
TGTATGTTACACCTTA	ref_5990_new	3	4	7	1	6	8	7	4	4	5
GCACTTTCATGTAATA	ref_5990_new	11	26	18	16	13	13	20	18	20	16
CGGTGCGGATTACTGA	ref_5990_new	11	19	12	8	21	13	12	6	13	12
TAGTGTGTTGCAGCCA	ref_5990_new	22	28	26	35	36	17	29	25	35	23
TTCTCACTAGAATTTC	alt_5419_upstream	28	10	27	22	23	30	15	20	10	26
GGTCGTTCAATCTGGT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
AAGCATTTTGTTGCCA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CTTAACGACGCGGCCT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
TCTGATTTGTGCCTTG	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCGCCCTCTTATT	alt_5419_upstream	34	19	17	22	29	24	17	22	13	33
TAGTTTTATGGTTTAT	alt_5419_upstream	130	62	141	150	84	118	99	107	91	92
TACTTATTCCTGAGAT	alt_5419_upstream	32	27	36	30	18	28	19	30	17	19
GACGCTGCAACAACTT	alt_5419_upstream	39	29	71	51	32	49	38	56	33	34
TCAGACTACGGTCTTC	alt_5419_upstream	56	30	59	56	32	54	42	46	40	45
GCGGGGCTCTTAAATA	alt_5419_upstream	28	24	49	37	25	33	24	36	38	34
CAGTACGAGTGGGATC	alt_5419_upstream	18	10	25	26	9	13	17	29	17	17
ACTCGTACATCGAATT	alt_5419_upstream	4	2	7	4	2	2	3	4	2	4
ACAGGACCTTCTAGTG	alt_5419_upstream	5	3	5	1	1	5	4	4	1	8
AGTCCGCACTCAGCCT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
AGGCATGGCTACCTGT	alt_5419_upstream	39	18	42	52	32	32	28	39	30	27
TAAAACTCCTTAGACT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
AAATTCGACCAGGTCA	alt_5419_upstream	30	29	42	32	24	40	20	37	27	26
TCTTTAATATTTTTTG	alt_5419_upstream	99	63	104	94	62	85	55	102	60	78
ATTTATCTTTTTGCAC	alt_5419_upstream	51	22	60	63	26	57	35	49	40	50
GAATAGTGTAGTTTGT	alt_5419_upstream	92	76	114	87	78	95	68	91	82	99
ATACGGGGACGCGCGC	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCCGTCTCTCATC	alt_5419_upstream	24	14	35	31	20	25	28	20	12	20
CCCCTTCTTCTGTATC	alt_5419_upstream	25	31	33	36	22	24	25	37	9	28
CGGTATTTGGTCTGCA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGTAATTGTTATC	alt_5419_upstream	52	43	74	49	40	56	32	46	43	44
CCTCGATCATCATCAC	alt_5419_upstream	61	48	91	61	68	63	49	55	38	54
CTTCTAGTCGGGTTGG	alt_5419_upstream	70	53	99	77	57	68	39	63	37	61
TACCCACTGCTTCCTA	alt_5419_upstream	47	48	76	48	50	49	41	42	46	48
TCTTACGTGGCTGGAT	alt_5419_upstream	42	23	46	41	27	39	27	45	29	27
TATTCTTTAAGGTTGC	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
GAGTAGCCAGCGTGCT	alt_5419_upstream	138	70	145	122	87	113	99	101	89	89
TGGGCACACCCGCTTT	alt_5419_upstream	38	23	38	41	35	53	37	36	36	30
CTTGTTCTCCCTCCCA	alt_5419_upstream	74	64	111	110	65	85	59	83	61	78
GTTTGCAAATGTCAAT	alt_5419_upstream	19	15	28	21	14	19	14	19	17	23
TCTGTTCGAACTAATG	alt_5419_upstream	97	51	104	75	70	81	55	58	75	49
GCGTGGGAGATCGGAA	alt_5419_upstream	69	41	85	70	57	65	35	73	43	68
CGTAATAGCCCGTGCC	alt_5419_upstream	42	28	77	51	37	55	28	44	29	50
CGTTCGCATCCAACGT	alt_5419_upstream	14	13	13	12	10	19	8	12	14	17
CTGGAACGTAACGTAC	alt_5419_upstream	16	26	13	16	15	17	17	14	17	13
CAATGTCAGTCTTGCT	alt_5419_upstream	74	59	85	88	58	75	44	55	48	68
TTTCCACCCTAGACGC	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCTAACAATTACA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
AATGCGGGTTTTGATA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CTAATCTACGATTATC	alt_5419_upstream	21	7	34	24	9	16	16	9	9	23
TTGAACTTACAGTTCG	alt_5419_upstream	54	44	74	61	28	53	47	44	44	49
CCAAGCACTGACTTGC	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CGGTATATAATAAGTG	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGTTTCAGGAAG	alt_5419_upstream	266	191	322	277	173	233	199	228	195	244
GTTGAGAGCTTAAGCT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTTTAATGTTACG	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTCCTACGCACTA	alt_5419_upstream	6	5	8	13	9	6	7	4	11	2
GGGAGGTCCAGCTTAG	alt_5419_upstream	2	7	14	3	6	7	7	5	6	6
CAATAGGCTGATATCC	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCGGTGCACATAC	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CCCACAATTTTTGGGA	alt_5419_upstream	41	27	43	41	24	34	24	37	27	33
TAACTGGCACACGACT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CATCTTCGGGGAGGAC	alt_5419_upstream	65	27	57	51	32	63	42	50	36	42
TCGATTGCGCCACGAT	alt_5419_upstream	52	51	83	69	43	67	50	60	38	53
ACTACACGATGTTTGA	alt_5419_upstream	83	63	89	99	55	64	61	68	66	63
TCTGCTACCACAGTTG	alt_5419_upstream	8	6	13	12	8	9	8	9	5	6
AGCCTCGGCCATAAGA	alt_5419_upstream	5	2	5	2	8	6	1	8	5	5
CTTGCACAGATCTAAT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGCACCCTTGTCT	alt_5419_upstream	45	38	47	66	33	38	41	41	37	37
TCTGCGATTGGTACCT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CCCACGCCCGTCACAT	alt_5419_upstream	112	79	156	109	66	114	71	102	69	104
TGTCAGTGGTTCGCAA	alt_5419_upstream	6	6	4	9	11	11	1	12	7	9
TTAAAATGATCTAATT	alt_5419_upstream	38	20	37	27	22	45	29	23	21	39
TCCACATAAGGCCATT	alt_5419_upstream	82	91	107	89	101	95	96	91	99	73
TCCCCAGTACCTCATT	alt_5419_upstream	28	14	44	32	28	32	25	26	28	24
TGTTTCTCGCTCGACA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCAATGCACTCTA	alt_5419_upstream	27	23	29	33	28	26	20	35	28	26
GCGGCTCGCTTAATTG	alt_5419_upstream	88	60	83	62	57	61	55	74	65	59
TATTCCTTAACGTAGT	alt_5419_upstream	68	43	81	68	43	70	48	78	57	66
CTTGTTAGGCTAGTAG	alt_5419_upstream	31	23	41	28	22	23	20	22	20	19
ACGTAATGTTCATCCG	alt_5419_upstream	40	20	57	37	26	32	41	27	36	30
ATTTTCTGTTCGTACA	alt_5419_upstream	106	95	115	107	61	94	88	87	81	91
TTAATATGCATATGTT	alt_5419_upstream	63	30	74	70	39	51	46	36	48	73
CCTTTTTAGTTCGGTC	alt_5419_upstream	12	8	6	2	2	10	5	4	9	9
GCTATCATTGTATTGT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
GCCAAACCGAACTTGT	alt_5419_upstream	22	21	26	19	23	22	18	20	25	24
GTTTATCATACAGGAG	alt_5419_upstream	6	3	6	10	7	13	13	6	7	11
GGAGCTTAGCCGCTGC	alt_5419_upstream	25	11	26	30	24	9	9	12	11	19
CTACGACGGCTTAGTA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CCACGCGTCGTTCGAT	alt_5419_upstream	7	9	7	18	6	5	2	15	13	9
ACGTAGTCTTTGCTCG	alt_5419_upstream	31	23	39	30	30	39	26	25	28	28
TTCAGCACACTCCAAG	alt_5419_upstream	14	14	9	9	17	4	23	7	21	3
CCTTCTATTAACCCCG	alt_5419_upstream	47	63	58	56	39	52	35	54	49	39
AAACTCCACCTAGTGT	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTGTTGGAGATTG	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTAAATGCCATGG	alt_5419_upstream	27	16	37	24	11	32	20	20	15	24
GGGGCTCTGGGGGTGA	alt_5419_upstream	75	63	115	88	72	69	56	80	68	78
ATTCCTAATTCATTCA	alt_5419_upstream	55	43	65	55	29	61	30	65	44	45
GGGCTAGACCCTTTCC	alt_5419_upstream	12	9	13	9	6	10	6	5	10	12
GGATTAAGTGCTGTGA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTTCTTTGTTACT	alt_5419_upstream	40	42	53	55	50	39	40	53	40	40
TCTATGTCTGTGTCAC	alt_5419_upstream	26	17	16	23	11	25	22	22	17	17
TCATCTTACCAACCTG	alt_5419_upstream	9	7	20	7	8	7	6	6	8	8
TTCATGAACCTTCCGG	alt_5419_upstream	18	8	19	18	10	17	17	24	15	15
AGGCTGGTTTTGCCAC	alt_5419_upstream	29	23	47	45	27	45	25	47	33	30
TCACTCCACGGTGCCA	alt_5419_upstream	1	5	4	4	3	0	5	6	8	5
TCAGGTCCGGCATACT	alt_5419_upstream	8	1	3	3	2	3	2	1	0	4
AGTAGTGATTCTACAA	alt_5419_upstream	98	63	123	96	66	96	83	105	81	102
CTGCTGGTCCAGTCTT	alt_5419_upstream	26	15	18	22	26	18	18	21	23	26
TCCCAACGGCTCAGTC	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
TTATATATCACTGACC	alt_5419_upstream	20	16	21	14	16	24	8	24	12	21
CCACCCGCGAGGCACC	alt_5419_upstream	9	6	6	10	7	9	6	3	7	11
GCGATTATTCACTATT	alt_5419_upstream	25	15	26	29	26	29	14	24	20	22
TAGGTGGATATTAAGG	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATGATATTATTC	alt_5419_upstream	66	32	59	44	24	48	23	37	32	56
CATCTGTACAAGCCGA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
GTGACACGTGGGATCT	alt_5419_upstream	8	7	10	6	3	9	9	6	0	9
TTTGTCCGAGACTCCT	alt_5419_upstream	14	8	11	16	12	12	8	8	7	11
GCGTAACTAGGTCTCG	alt_5419_upstream	48	39	81	58	45	61	35	68	48	61
ATTCCGGCTGAATTTT	alt_5419_upstream	55	24	59	49	38	47	26	49	31	41
ACGTGAGCGGCTCATG	alt_5419_upstream	10	13	18	12	10	13	13	22	15	14
ATTTCCCGTTTGACCG	alt_5419_upstream	20	22	32	21	18	19	16	18	15	21
CGGAGTTTGTTCGGTT	alt_5419_upstream	141	69	129	130	82	125	103	111	90	104
GCTCATCTGCGATAAC	alt_5419_upstream	38	29	46	33	37	38	29	33	45	31
GTAGCTCAAGTACGCC	alt_5419_upstream	28	8	28	20	22	26	17	24	21	28
GGCTGGTAGGGGACTA	alt_5419_upstream	0	0	0	0	0	0	0	0	0	0
GAGCCTGGTCGGAATC	alt_5419_upstream	59	43	66	78	56	76	45	60	51	65
GTAAGGTGAGCGCCGC	alt_5419_upstream	10	8	7	5	8	8	6	6	11	6
TCTCACTTCTCAGTCA	alt_5419_upstream	3	0	4	0	0	2	2	1	1	6
TATGCACCCGGTCATG	alt_5419_upstream	178	113	208	175	104	161	119	184	118	150
TCGATCACGGTAGTGA	alt_6126_new	45	32	57	57	26	37	44	36	38	35
CGTCTTGTTCTTCGCA	ref_6126_new	26	22	38	20	14	24	20	36	22	24
ACTTCACCATCATTTT	alt_6126_new	23	11	26	37	13	22	10	20	21	22
CGCATAGGCCTAGCCT	alt_6126_new	83	50	67	60	52	56	55	69	41	40
ACTGAAAGGCCCGCCT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
AGCTTCTTCAGGTTAA	alt_6126_new	11	13	12	13	10	13	13	10	9	9
CTTCGTGGATTTGCCG	alt_6126_new	6	5	14	12	7	15	4	7	6	8
TATTGTTAGCTGTGGC	alt_6126_new	18	20	39	40	22	41	33	29	20	29
AAGGGAATAGCACGTA	alt_6126_new	7	5	3	11	8	5	2	3	7	2
TACGTTAAACTCGCTG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GATGATACGTAGCTTT	alt_6126_new	72	42	94	87	54	67	46	50	58	64
CGAAACTTCGATCAAG	alt_6126_new	9	3	12	10	1	5	1	5	7	7
ACAGCTATGTTATGCC	alt_6126_new	2	2	6	1	2	2	3	2	1	3
GGAGTCTGGCTTAAAT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
AATGGCTGCAGCCTAT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GACGGTTTGAGGGGCG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TATCCTTACATTTGGA	alt_6126_new	197	167	257	208	168	192	175	211	181	185
CGTGTGGGTTCTGTTG	alt_6126_new	55	49	49	48	45	59	34	35	37	41
CTTCATGTTGTCGTCG	alt_6126_new	118	79	178	159	104	124	105	124	106	102
TTTTCGCATTGCATCG	alt_6126_new	0	0	0	0	0	0	2	0	0	0
TCTCACAGGCTTTAAG	ref_6126_new	79	62	99	79	38	73	55	59	62	89
ACATCGGAGTTGTTAT	alt_6126_new	7	1	1	4	0	3	3	1	2	1
TCCTCAGAGCATTCAC	ref_6126_new	35	26	45	34	34	22	23	27	25	34
TTATGCTAGTCGTCTT	alt_6126_new	7	12	3	17	11	4	8	6	8	6
GACCTTTTATACACCG	alt_6126_new	30	28	70	59	28	55	42	48	28	45
TAGGGCGGCTAGGCGC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTTATCTGTTG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CGTGTGTAGATCCGGG	alt_6126_new	6	4	12	10	5	6	3	8	3	5
ATAACATGTCTCTTCA	ref_6126_new	39	14	41	41	18	31	23	38	18	23
CCTCATTTTGGTGCCT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CAAACAAAGGAGCGGA	alt_6126_new	50	34	66	78	52	56	50	51	48	40
CGGCCAGGCGTACTGC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GTATAATATGAAGAGA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TGAATATGCCATCGCG	alt_6126_new	21	16	17	14	20	18	14	13	20	16
GTACGGTAATGAGAGT	alt_6126_new	152	124	173	147	128	142	124	181	128	147
TCGTCGGCGGAGTTGC	ref_6126_new	87	63	121	118	53	80	63	88	52	79
TGTGGCTGTCGTCGTT	ref_6126_new	77	62	94	95	92	81	62	97	66	75
CTTTCATTGTCCCTTC	alt_6126_new	102	112	154	119	123	119	107	116	112	102
GAACCCTTCCAGCCTA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CTGGTTTTCTGTTGTG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CAGCTCCTGTATCGGT	alt_6126_new	0	0	0	0	0	1	0	0	0	0
TGGGTTTACTTCCTCT	alt_6126_new	47	19	53	57	26	40	32	48	17	26
GTCTCATCGTTTCATG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CATGTTCCTCATAAAC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GGCCATTCTGATGGTG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GTCAGTCCCTCGTGTG	alt_6126_new	27	23	36	32	31	21	17	22	28	20
AGGTCGGGGGTCAAAT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GAGGCACTTTAATCGT	alt_6126_new	4	0	13	1	2	4	3	0	2	1
CTGCCCCCTGCGCTAT	ref_6126_new	36	31	41	35	35	39	30	52	25	27
TCGTATGGGTGTATTT	alt_6126_new	81	59	105	93	59	83	83	91	77	75
ACATTATGGCGTCCCT	alt_6126_new	65	63	65	65	48	73	47	62	47	52
GTGGCACCTGCATTAG	alt_6126_new	13	11	11	29	14	16	10	18	13	16
ACTTGACATTCACGCT	alt_6126_new	17	17	31	18	9	9	13	20	13	21
TATTCACTTACGTGGC	ref_6126_new	55	40	95	42	43	55	45	52	44	54
GTATTCCACCTTGTTG	ref_6126_new	7	7	10	8	2	2	6	4	5	6
CACAGCCCTATTTTTA	ref_6126_new	67	71	89	95	60	61	64	79	74	65
ATAGTCCACGTTTATA	alt_6126_new	15	10	21	9	18	12	12	20	14	18
TCGGGGTCCACCCCTA	alt_6126_new	14	5	7	4	10	6	12	9	8	12
TCTCTTATGCGACTCG	alt_6126_new	27	20	27	29	19	23	24	22	25	26
ATTTATACTCCGTTCG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
ACCGTAAGTTTTGGTG	alt_6126_new	21	13	13	13	16	20	14	10	8	8
CCTACTTTCAGTGTCG	alt_6126_new	19	20	17	18	13	8	26	9	18	12
TATCAGCGCTATATCC	alt_6126_new	35	49	59	42	40	38	49	43	50	33
CGGTCCCATTGGGTGA	alt_6126_new	9	13	11	8	14	12	7	15	12	18
ATTCATATCGTGATTT	alt_6126_new	35	13	29	29	20	36	32	21	24	33
CAGATCAATCGTGCCC	alt_6126_new	60	48	86	75	49	67	75	70	49	63
TTTTGTCAAAGTTACG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TTCACCACAAGTGTTT	alt_6126_new	16	8	18	18	11	8	11	10	16	12
GCAAGACATTGTCTTT	alt_6126_new	45	43	63	71	34	42	43	54	49	34
ATTCTTAGCTTGTTGA	alt_6126_new	52	30	48	62	34	45	40	48	35	48
GACCACTTTCCACGTC	alt_6126_new	146	119	207	171	114	127	135	136	156	140
TACTTAACGTACTGTT	alt_6126_new	15	19	22	17	19	19	11	21	20	19
ATTGGCCCCTCTTATC	ref_6126_new	75	57	79	89	46	76	48	64	60	54
CCGAATGACGGGCAAG	alt_6126_new	13	35	23	32	33	21	34	24	44	19
AGATATGTTCCTCGCA	alt_6126_new	12	7	9	19	5	18	13	10	11	12
CACCGTTAATGACAGC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CCAAGAATGCGATCGA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GTTAAAAGCGAATGCC	alt_6126_new	39	23	47	33	30	45	29	37	39	39
TAGCGTGTGCAGAAAC	alt_6126_new	35	32	33	34	33	34	41	33	34	31
AAAGACCACGCTGTGG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TGCCGACCCATCGCTT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GCATATCTAAGTACAA	alt_6126_new	50	35	74	61	46	46	45	43	51	52
ACCTTTCCTGGAATTT	alt_6126_new	101	63	156	106	77	84	85	115	92	104
GACTGGCCTGCTGGGT	alt_6126_new	5	4	2	3	2	4	0	5	1	4
AGTTTTTCCGTCTCCG	alt_6126_new	33	26	44	28	21	28	25	28	21	27
GCTGGGCAAGATACTA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
ACTTTCTTCTTTACGG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TTGCTCTAACGGGGCG	alt_6126_new	29	12	20	26	21	12	15	21	19	18
CTCGTGCGGATCTCCC	alt_6126_new	79	62	97	63	61	64	67	59	77	71
AATCCGTTAATTTGTC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TGGATAATTGCTAGTG	alt_6126_new	114	69	149	119	106	107	93	107	93	100
GCCATGCCAGGTTCGG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CGGTCAATCTCTAGAA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CATAGGTTTTGCCCAC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CTATGCATGATTCGCT	alt_6126_new	83	62	102	102	62	81	64	72	88	96
CTTTTAATCAACATCT	alt_6126_new	1	2	4	2	2	1	1	1	1	2
GTGAGTCGCACATGCC	alt_6126_new	11	9	13	12	12	13	14	7	9	8
TCGCTTGAAATTTTAG	ref_6126_new	22	25	18	11	13	10	20	10	12	9
TCCAATGAAACGCGAC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TCTAGAGATTTTTCAT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TCACGGTCGCGACCAC	ref_6126_new	105	105	147	132	94	106	91	126	77	106
TGATTATCAAAGGGTC	alt_6126_new	35	23	57	45	33	41	25	37	40	35
CACATCAGGTTTCATA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TAGTCTAGAACAGTTG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TAATTGCCATTACTAC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TTAATTGTTTAGTCAT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CTGCGTGGTGCCGACC	ref_6126_new	145	139	218	179	135	167	156	182	151	162
CGGTTACCTGTAAGTA	alt_6126_new	12	11	14	8	20	16	11	16	16	11
GGGTGAGGGGAGTCTG	alt_6126_new	39	28	41	46	21	45	32	42	39	31
CTGACCAATTAATGAT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GCAAAGGCCTATTAGA	alt_6126_new	3	2	3	5	7	4	3	4	4	8
CCTTAGAACGACTTAC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TCCGTAACCGTCAACA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TTCGTCTGCATTACGG	alt_6126_new	50	55	78	54	49	44	60	68	59	49
ATGATTGGCTGCTGTA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
ATAATTTTTTCCGCTC	alt_6126_new	19	11	18	22	3	19	12	14	12	10
TAAAGTTGTGATCTAT	alt_6126_new	44	37	58	48	34	41	38	40	35	42
TATTCCTTCACAACAG	alt_6126_new	7	1	13	8	3	5	8	5	3	7
CTACGTAGTTCCGAAT	ref_6126_new	15	18	15	8	13	14	17	15	21	12
GCGTCTCCTTAGGTCT	alt_6126_new	104	50	114	89	78	78	50	99	56	83
TTGTTAGTTTGGGTAA	alt_6126_new	91	53	114	87	71	69	86	83	52	61
ATCTTTGCAATTTGGC	alt_6126_new	52	37	70	57	35	40	45	51	47	38
CACTCCAATTTTCACT	alt_6126_new	4	8	4	6	9	2	8	4	6	8
TCCGGCATAAGATATT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CCGTCGTATTTCGTAT	alt_6126_new	3	8	8	6	8	3	5	4	3	6
ATATTCCGCCTGTCTA	ref_6126_new	16	10	22	21	8	11	28	10	10	7
TCTCGTCATACTATGC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
ATCTCAACATAGTGAG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CGTTTAGTATAGTGAT	alt_6126_new	23	20	14	22	8	16	9	13	7	17
GTCTCCGCCTCTCAGA	alt_6126_new	47	37	54	49	42	40	47	42	55	40
GTTACCGCGACGCCGG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GGGGAGGTTGGCGCCC	alt_6126_new	31	17	57	27	21	22	22	24	26	26
GTGTATTCACCCGCGC	alt_6126_new	5	1	7	7	3	4	4	6	3	7
CTGTGCCATGAATTGA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GGGAGTCTAGAACAGT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TGGCCGATTAAACATC	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TGCTTGTCCGCGCTAG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TTGGATGCTGGACCAG	alt_6126_new	123	98	132	116	71	127	118	76	95	110
CTCGATAAGGTTCATC	alt_6126_new	40	32	60	55	31	53	31	50	43	47
GACGGCCGCCCAACCT	ref_6126_new	147	122	214	178	124	161	143	138	124	149
AGGCAAAGACACAGCG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CGGGAGGTGGGTTACG	alt_6126_new	96	69	145	94	72	86	81	101	68	76
GCTATTTTTGTATTTT	alt_6126_new	45	37	82	63	39	59	40	59	54	49
TGATCCTGTCCGACGG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TCTTTTCCAACCACTT	alt_6126_new	42	35	58	37	31	40	34	32	30	38
TTCTGTACCGGAAAGT	ref_6126_new	159	113	128	107	89	108	106	126	115	91
CGAAGGGTCTTACCGT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ATTTTTTGCGTGTCTA	ref_6126_new	1	6	3	4	11	4	4	9	3	4
CGCGAGTCTGGTTTCG	alt_6126_new	147	109	192	169	120	129	121	133	106	122
GCTGAATGAATGAAGG	alt_6126_new	0	3	2	5	2	0	0	1	1	0
GTATGCGTGTCGATCT	alt_6126_new	18	18	39	29	18	32	21	25	22	15
TCGGTTAACACGAGAT	alt_6126_new	94	92	112	113	90	80	81	84	84	99
AAGGGGGCTGCATTTG	alt_6126_new	16	9	18	17	16	27	16	11	16	16
TTCTTTAATAGTCGTG	alt_6126_new	138	113	176	165	121	126	115	143	128	135
ATCGACCAACAATCTG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ATTACATTAGAACAAC	alt_6126_new	21	12	33	17	15	24	16	15	6	15
TACGTCATGTGCTCCG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TCCACCGCCTCTTAAA	alt_6126_new	1	2	4	5	4	4	6	4	4	3
CTACGCGAACCTTCTG	ref_6126_new	19	52	35	39	32	28	26	38	56	34
ACACGCCCCTCCTAGG	alt_6126_new	25	23	23	16	21	9	17	15	25	20
ATGTGGATTGGCTCCC	ref_6126_new	14	3	5	5	6	7	2	3	9	3
GCGTTGAATTAGGGCT	alt_6126_new	196	124	181	177	120	141	146	185	134	156
AACTAAATTTCTACTA	alt_6126_new	26	35	47	31	27	35	21	34	18	32
CATAGAATTTATTACC	alt_6126_new	24	14	27	33	27	18	43	22	23	13
ATCGGAGTCTGACCGT	alt_6126_new	4	2	11	10	3	8	4	4	1	10
ACAGTTAATGAGTAGT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TTGGGGGATGCCGTGT	ref_6126_new	51	31	73	56	27	52	32	43	38	34
CTCGGCATGGATTCAG	alt_6126_new	223	158	279	226	128	234	150	213	161	178
CCACTTGCAATTAGTG	alt_6126_new	10	18	18	27	27	12	27	11	25	13
AACTTTAATTCGATTT	alt_6126_new	0	0	0	0	0	0	0	0	0	0
GTTTAAGGAGCTCCTT	alt_6126_new	105	86	138	128	63	118	97	104	102	115
CTCTATCTTTATATGC	alt_6126_new	120	101	162	139	96	122	97	119	109	88
ACTTTATGCCTTTGCG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CCGGACTCGATTATCA	alt_6126_new	0	0	0	0	0	0	0	0	0	0
CCAATCCTCTGCTTAG	alt_6126_new	23	33	35	23	30	19	32	24	41	15
CTCTGCTTAAGTGGCA	alt_6126_new	12	9	3	6	7	6	5	6	8	9
CGCGTGTTAGGGTTCG	alt_6126_new	7	19	15	10	11	10	4	6	10	5
ATCGGCGCTTTATCTC	alt_6126_new	47	40	48	58	37	34	49	47	39	55
GTAGTCTATGTGCGGT	alt_6126_new	20	19	31	24	23	29	25	27	21	28
GCATTTACTCGTGCGC	alt_6126_new	33	26	45	43	31	31	29	31	33	19
TAATGGATGATTAAGT	alt_6126_new	119	80	126	110	89	112	64	102	69	90
TCCTCGAAGGCCATTG	alt_6126_new	29	26	22	34	28	36	25	36	30	28
ACGATTTAAGGTGTTG	alt_6126_new	26	20	33	36	19	17	15	32	14	22
CTTGGCTCTCGTCTTA	ref_6126_new	45	44	82	79	46	64	62	55	40	63
CATTACCACGCGCTAT	alt_6126_new	56	36	52	59	41	48	43	60	32	45
TCGCCCATAGAGTGGG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
ATTGAATTAGATTATG	alt_6126_new	137	89	176	155	107	133	81	128	106	117
CTATCCGTAAGGCTTC	ref_6126_new	49	23	44	44	33	33	31	43	31	46
ATTGCTTGTCCCTACG	alt_6126_new	0	0	0	0	0	0	0	0	0	0
TCAGGTTAAATGTATG	alt_6126_new	45	56	46	59	40	54	48	44	61	46
ATTCGTCCTGGGCGTG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
AAGATGATTGCGAGAA	alt_6023_new	103	73	128	128	101	112	89	91	72	77
GTTCACCGCTAGTGTC	alt_6023_new	389	388	541	502	438	415	410	432	404	406
TTAATATTTGCTTGTG	alt_6023_new	19	17	32	31	16	21	10	16	13	20
TCATTATTAATCTGCT	alt_6023_new	29	18	40	20	9	22	11	24	10	20
ATTTACGTTAGCGTGC	alt_6023_new	0	0	0	0	0	0	0	0	0	0
AGAGTCAGACTTTCTT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
AACGTTATGGCCGACA	alt_6023_new	4	5	5	3	3	1	0	3	3	1
CCTACTTTTTCATCCC	alt_6023_new	45	41	51	36	40	46	36	41	32	42
GCGCCGCTTTTGTTGC	alt_6023_new	90	83	96	80	76	77	68	89	69	67
CCAGCGCGTTTCGGGC	alt_6023_new	7	27	5	7	36	8	38	13	39	6
TTCTAACGGGACAAAC	alt_6023_new	22	22	31	18	15	31	7	19	15	16
CCGAGTAAGCGTTTTA	alt_6023_new	240	195	344	277	244	230	242	321	222	190
TCGTGACAATGTGGTT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TATTTTTTGCGTGAAC	alt_6023_new	17	9	15	16	11	6	7	16	7	5
GCTTCCCGTTTATACG	alt_6023_new	90	50	97	81	35	55	77	56	43	59
TGTATGGACCTGGCGC	alt_6023_new	5	5	11	4	4	2	2	0	5	8
ACTATGCCAACCACTG	alt_6023_new	13	15	20	18	13	11	14	16	13	19
GCTTACTCGTAATGGC	alt_6023_new	67	27	67	58	25	47	41	45	30	51
GTCTCTTTTTACGCCT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
ACAAAGCGCAGGTAGA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CAATAGCGGACTCATG	alt_6023_new	80	53	115	93	76	77	65	73	94	93
TTATAACGTGTTTTCT	alt_6023_new	62	56	98	76	66	56	57	80	64	76
CTCTGTCGCCAACGCT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TTCGGTAGGAGTGGTA	ref_6023_new	79	64	109	101	56	70	53	107	55	93
CCCGGTTGGATGTCCC	ref_6023_new	16	30	24	27	43	15	39	26	35	17
GCAGACCTGTTACTGT	alt_6023_new	94	52	106	78	91	98	58	75	73	82
ATGTAAAGCGCCACAT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CTACACACATACTTTA	alt_6023_new	48	36	63	51	36	38	42	37	46	34
CTCCGCAATTCAAATC	alt_6023_new	8	14	21	25	6	16	13	11	13	19
TTGAGTTACAGGGCCT	alt_6023_new	6	6	19	10	8	6	5	7	14	6
GTAGATCCATCGCCAA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TGCGGTAAGTAAGTTG	alt_6023_new	34	13	26	43	9	34	20	29	17	10
GAAACAGTTCCAATGC	alt_6023_new	8	5	12	11	10	18	10	9	15	12
ACTATGCGCTCGGCTC	alt_6023_new	15	24	27	24	11	14	19	9	16	14
GGTTTTTTTGAATACA	alt_6023_new	112	95	120	98	92	88	93	97	113	98
CTCATGGGTCTTGGGT	alt_6023_new	4	7	20	13	14	11	10	20	9	12
ACATAGTTCGGATATG	alt_6023_new	35	31	34	35	15	46	27	23	28	26
GATTTTTACTGTTACG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TTGGACTTACTGCAGC	alt_6023_new	43	25	48	29	27	37	35	32	34	23
CAGCTCGAAATCCTCC	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GTAAGATATTATGCAC	alt_6023_new	11	6	12	11	9	11	7	7	4	6
CTTTGTTCTTAAGGCC	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GATACGCTCATCCATT	alt_6023_new	77	35	75	71	67	70	49	79	49	54
ATTATCCTTGTGGTCC	alt_6023_new	80	57	92	97	58	76	72	84	56	69
TCCTTATTTTCCGCGT	alt_6023_new	69	29	74	42	35	38	26	49	33	48
TTTTTCGTCCGCCAAG	alt_6023_new	102	56	103	89	61	89	62	93	56	69
TTATTTCCGGCAACGT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GATCATTGTATTCATT	alt_6023_new	48	22	75	40	38	38	42	42	43	34
TCGTAACCGTTACATC	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TTCCTCCTTTAGTTTA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TTTGGTACATTCATTT	alt_6023_new	62	58	88	57	59	61	49	54	60	35
ATTGCACTTCCGTCCA	alt_6023_new	61	47	84	72	49	58	42	81	52	48
CTTTAAACTAAATGTT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CTATATTCCGTCATTG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CCTGATTTCGGACGTT	alt_6023_new	7	7	12	6	7	15	9	6	6	8
GGTATACTCCTTTTAT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CCCATAGGGATAGTTA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GTATAAGAGCCATCAG	alt_6023_new	68	36	76	61	27	58	37	75	36	47
GACACTATGTAGCAGG	alt_6023_new	2	5	7	6	4	8	4	2	6	3
CCACTTGAGATTTGTA	alt_6023_new	18	7	21	13	5	11	11	9	6	9
GCCCTCCAGTACAGGG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GACATTGTCTGTAGTC	alt_6023_new	31	24	23	20	21	33	20	12	17	35
GGTACTCGATGTCTTA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CTCGCGGGTCTATCTG	alt_6023_new	7	5	14	4	6	4	6	7	11	0
CCAACAAACGCTCTTC	ref_6023_new	37	60	61	41	56	50	46	34	42	45
GCCTACGTTCCATTAG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TCGCCTCCCCCGGTTA	alt_6023_new	139	100	141	132	85	108	89	113	105	114
ACTCCGCTTCTAACCT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TTTGTCCAGAATCTTA	alt_6023_new	24	19	24	23	17	15	24	19	18	20
TCTGGCACCATTCAAA	ref_6023_new	35	31	54	46	35	33	24	42	43	33
CTAGTCTCCATCCACG	alt_6023_new	49	26	66	48	28	51	36	52	37	31
CAGTTATTTGGTATGT	alt_6023_new	5	5	15	7	3	8	7	11	10	6
TGTACTCGGTTACCTT	alt_6023_new	68	65	79	83	61	62	48	55	55	70
ATACCCCCGATTTCTA	alt_6023_new	314	193	353	284	202	297	205	320	221	261
TCGTTTTTGACAATTC	alt_6023_new	17	8	17	17	9	25	8	16	13	14
GCGACAACTGGGCATT	alt_6023_new	81	89	101	88	88	75	72	77	63	81
CTTGGGCGCCAGCTCA	alt_6023_new	19	21	40	25	11	23	16	27	22	19
TAGTTTGCGTCCTCGC	alt_6023_new	77	74	120	90	69	102	88	75	72	104
TCTTTGGAGTTATATT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GCATTCCTAGTTTGAT	alt_6023_new	6	4	7	8	1	4	4	5	0	2
ATTTAGGTTTGTGACG	alt_6023_new	34	27	48	45	36	49	41	38	37	35
GGCACGCTGTAGAGTT	alt_6023_new	51	54	71	65	51	67	55	62	50	62
TTTTTTACGGACCCCT	alt_6023_new	72	40	109	69	60	66	38	61	45	54
CACTTGCTTTTCCACG	alt_6023_new	49	23	50	43	20	43	21	34	30	34
GGTCTACCCCAGTGGA	alt_6023_new	45	53	58	56	39	55	44	48	42	45
AGGATGGGCACTTTAA	alt_6023_new	212	149	239	215	167	205	156	187	174	188
TACTGCACGGTGATTT	alt_6023_new	387	252	407	400	298	366	277	324	281	330
TCTACGTAAGGTAATC	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CGATTTCGTCTCCTTT	alt_6023_new	141	68	172	135	63	133	62	129	82	126
CAAACCGCAAGACGGT	alt_6023_new	88	78	123	131	59	99	86	101	79	86
GCCTTCCACTCTGGTA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
AAGCGCTAAGGATCTT	alt_6023_new	8	5	13	4	1	6	1	10	4	4
AAGCAGGTATTTATGT	alt_6023_new	164	133	206	159	106	150	104	129	129	133
GGTAACCCACGTGTAA	alt_6023_new	51	44	55	63	65	70	65	57	59	49
CGCACCTCTATTCAAT	alt_6023_new	13	8	13	6	7	8	6	13	9	5
TCAGACGCTGGGCACC	alt_6023_new	45	25	50	52	20	40	26	31	31	41
GTGGTCGCACATTATC	alt_6023_new	0	2	1	3	2	2	1	1	0	1
TGCTTACCGATTCTCA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GTGAGGGCGTGGATGG	alt_6023_new	59	50	65	84	66	61	42	66	61	53
AACCTCGTATCTTGCC	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GAGGAGGCATATCCGC	alt_6023_new	80	59	89	77	34	80	56	69	60	55
CTGATCAGTTATCACG	alt_6023_new	3	3	1	1	4	2	0	2	0	0
CTGCTCGGCCATGCGT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TTCGTCACGGTTAGGA	alt_6023_new	2	4	2	3	1	6	4	1	0	3
CAAGTGGATAGTCAGA	alt_6023_new	126	83	166	138	80	116	95	120	99	97
GATCTATCGCGGGCCT	alt_6023_new	12	8	16	10	8	8	7	10	8	7
ACATTGCGATCGTTCT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TTATGTGTTTCGGGTT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CTATCAAATCCTGGGG	alt_6023_new	32	41	45	56	33	22	45	45	30	31
AACCCGTTTACATTTT	alt_6023_new	93	61	101	106	53	63	51	91	70	69
TTCCCTGGCATTGATT	alt_6023_new	12	9	17	22	7	21	10	18	10	11
TCATTCTTGGCCCCGG	alt_6023_new	70	69	107	97	82	71	64	93	67	85
CAGTTACTTGGCACTT	alt_6023_new	92	116	118	105	103	95	116	127	123	86
GTAACGAGTTCTTCAC	alt_6023_new	26	25	45	28	26	26	21	25	22	27
CTTTGAATTGTTGGCG	alt_6023_new	23	20	45	42	24	42	37	37	22	35
TCGAGCTGGAACTGAA	alt_6023_new	74	53	78	71	45	73	29	50	50	50
GGCTTACACAAACGTT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CGCTTATGTATAGTGG	alt_6023_new	30	15	31	15	12	22	19	24	16	21
CAGCCAAGCGTTGCTG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
ACTGACTCTGTTTAAC	alt_6023_new	141	102	173	152	88	124	83	124	114	122
GGCTATAACGAACGAT	alt_6023_new	70	41	83	62	61	35	48	64	48	71
AGATTTGGCTTATAAC	alt_6023_new	28	15	30	31	15	21	15	16	20	16
TAGGAGGCCCTGGCAC	alt_6023_new	206	163	233	221	158	218	142	213	167	185
CCGTTGATGCTGGGCT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TCCGAAGGATAGTGGA	alt_6023_new	11	24	19	24	18	21	30	21	18	9
CCTCTTTGTCATGCCC	alt_6023_new	0	2	2	1	1	2	2	0	1	3
AATAACGGCCGCCCGC	alt_6023_new	77	44	88	71	60	51	53	53	41	67
TTACGGTAGCCTCAGT	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CCTCATGTAAAACTGG	alt_6023_new	174	130	202	205	133	138	142	174	138	159
ATCGCTACACATCCTT	alt_6023_new	57	48	67	61	53	45	53	67	51	64
TGCCATCACAGGTTAT	alt_6023_new	13	30	32	18	24	20	23	17	26	12
CTATTGTATTCAGCGA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
TCTCTTCTTACGGTCG	alt_6023_new	30	19	44	24	27	36	23	38	27	28
GATTCGCACTGTTCTT	alt_6023_new	12	10	6	11	5	10	9	8	4	8
AAATCCAGGTATGTTC	alt_6023_new	46	30	46	46	30	31	36	54	32	28
GTCGAAATACGTGGCT	alt_6023_new	71	63	111	91	82	61	61	63	91	84
AGTTAGTAACATATTT	alt_6023_new	21	22	28	20	14	17	16	20	12	19
TATCCTTTTGGGGTCG	alt_6023_new	42	25	42	50	37	35	33	52	34	50
GGTCGTGACTCATGTA	alt_6023_new	0	0	0	0	0	0	0	0	0	0
ACCCGCAGTTTGCGTA	alt_6023_new	63	55	68	65	61	58	52	63	85	63
CTAACAGCCTGTCGCG	alt_6023_new	21	14	25	24	10	27	20	21	27	21
AACCTGGGTGTATTGC	alt_6023_new	8	6	12	8	4	4	6	16	11	8
CTATGAATATTGTTCT	alt_6023_new	82	65	80	92	69	75	53	93	56	74
GTTGGTGACCACGCTC	alt_6023_new	35	36	37	46	30	47	40	46	34	30
AGGCAAAGAGGTTGCC	alt_6023_new	235	188	267	272	181	253	177	229	188	208
GGAATCTAGAACAGTT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
AGGCCGTCTGTTCTTG	alt_6023_new	100	88	113	109	55	88	92	107	74	101
AAAGAGATGGGGTATG	alt_6023_new	25	23	36	23	15	21	17	16	21	20
CCACCTCCTTGGTTCC	alt_6023_new	61	80	66	48	49	55	60	50	74	45
GGGGAGGAGTACTCTA	alt_6023_new	18	15	26	27	18	24	16	22	23	14
AGGTTTCGCCTCTGGG	ref_6023_new	15	5	15	16	10	13	15	18	8	18
CGAAGCAGGCGCATAA	alt_6023_new	225	136	298	252	150	194	167	221	156	182
CGTGCTGCATATTACG	alt_6023_new	63	56	81	49	55	51	41	61	63	34
TATGCGTTTATTCCTC	alt_6023_new	18	14	29	16	18	17	14	21	24	15
GATAACCTTTCCTGTG	ref_6023_new	68	44	64	55	38	55	41	55	46	40
TTTGCTAACCGTAATA	alt_6023_new	9	9	17	11	7	14	9	14	13	16
GTACAGACATTAAGTG	alt_6023_new	40	34	63	40	30	42	29	27	27	38
ATTGTCTCCTGCTCGA	alt_6023_new	22	12	27	27	8	16	19	12	20	16
TATTAAGCATATTTTC	alt_6023_new	46	25	65	47	21	36	25	45	25	39
GGGATGAGGGTCTAGC	alt_6023_new	0	0	0	0	0	0	0	0	0	0
CTTTGTTGAATTCGCA	alt_6023_new	61	44	54	45	44	31	23	35	44	37
CATGATTACTTCAGCG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
ATTAATTGTCGAAATG	alt_6023_new	48	48	70	47	27	39	47	48	28	28
GCGCGTAAAGAATAAG	alt_6023_new	9	9	15	7	5	12	4	9	8	6
CGCGGGGGACGCTACG	alt_6023_new	0	0	0	0	0	0	0	0	0	0
GTGCTAGCAGTGGATG	ref_6023_new	110	120	137	128	102	88	113	99	111	98
GTGGTTAAGGGTACAG	alt_6023_new	25	26	36	49	21	33	32	36	38	41
TAGGCCGTGGACGGAG	alt_6023_new	12	5	20	10	5	8	8	14	7	5
TTCCATGTACGACTCT	alt_728_missing	48	65	32	30	67	25	59	27	67	36
GTAGGTTTCTGCGTTT	alt_728_missing	25	13	14	7	8	19	26	17	11	17
TGGGTATCGTAAGCTT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TTCGCTAGGCTGCCCT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GCATGTTTTCGTTACT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GCACAAGTCCTACAAA	alt_728_missing	46	90	57	55	98	66	67	68	118	59
TCGTGTGGAATTAGGT	alt_728_missing	13	22	25	15	23	14	25	27	26	16
ACAGTGGGTCTGCCTA	alt_728_missing	53	68	65	40	80	52	60	44	93	32
GTCCGTTCGAGCGGCT	alt_728_missing	8	15	13	6	7	10	20	4	10	3
GGCCCTATCTCGAAAC	alt_728_missing	22	39	30	16	33	26	47	35	35	15
GTTCTACGCATTCTCG	alt_728_missing	93	119	131	92	138	86	146	101	160	81
CCTTCTAAGTGATGTG	alt_728_missing	2	1	1	0	3	1	4	4	1	0
TTTTGTATCAAGGTTG	alt_728_missing	23	28	21	17	30	15	29	22	16	24
GAACATCCACCCTCTT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
CCATGGAAACGTACCC	alt_728_missing	21	20	25	27	39	24	27	23	30	21
TGCGATTCAAACTGGC	alt_728_missing	17	66	17	16	33	13	62	7	52	15
TGTTTCTAACCTGCTT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
AACAATATTGACACTG	alt_728_missing	0	1	0	1	1	2	3	3	1	0
AACTTTGAAACGTCAA	alt_728_missing	12	14	25	16	32	12	17	10	27	9
TCATGGGAGATCCCAC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TCACGATAGGGTTTTA	alt_728_missing	31	63	48	47	47	30	63	30	55	25
TTGTTAAGCAAGTGGC	alt_728_missing	3	9	3	1	9	9	4	4	5	5
TTTTTTGCCATGGCTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GGCAACGAACGATGCA	alt_728_missing	17	21	23	17	28	26	22	18	31	15
GCCCAAGTCGGAGAGA	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TGGTCGACCTTGCTTC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GACAGTATCTGGCCAA	alt_728_missing	40	39	32	42	28	17	28	23	33	20
CGGTCTAGCTAGTGAG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TTCATGTTCCTATGCC	alt_728_missing	27	30	38	23	36	33	38	22	25	27
TGGTCCTAGATCTATA	alt_728_missing	71	100	91	59	98	71	92	60	97	51
CGCGAGCAAGCAGACA	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TACCAGGAGGAATGAT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTGCCTGTTCCG	alt_728_missing	7	10	3	2	8	3	10	2	10	4
GCTATCCCCAAACTGG	alt_728_missing	7	8	3	3	3	3	7	5	15	2
TGACCGCTGGTTCGGC	alt_728_missing	10	7	6	1	8	9	16	11	8	5
GTCCCTATCATGCACC	ref_728_missing	90	92	75	61	138	72	131	78	136	60
CTTAAACCAACGCTTA	alt_728_missing	45	36	53	47	42	43	68	49	61	37
CTGATGCGCGTATCTT	alt_728_missing	17	27	30	15	35	25	37	22	32	21
CCCTAGTCGCGGGTGC	alt_728_missing	5	32	4	4	23	5	25	3	23	5
TGGCTCTGTAATTCGG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
CTGTGCCGTTGTACTC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
ACGGACATTCTGCTCA	ref_728_missing	89	110	107	67	99	82	128	61	131	78
GCAAGCTCCAAGGTCC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TTCGCGATAATCATGC	alt_728_missing	62	87	68	59	54	34	64	52	71	55
TTATGTGTCATTATCG	alt_728_missing	39	58	54	40	50	42	69	37	42	31
GCTAGGATAGTTGCTG	alt_728_missing	6	7	3	15	4	5	5	6	9	4
TTTGAGGGCTGTTTCC	alt_728_missing	68	102	116	77	81	70	112	70	114	51
GATTGGAATTGTTGGG	ref_728_missing	28	38	30	29	31	22	39	21	43	17
CGTCATTTCGTCCGCC	alt_728_missing	15	13	31	14	19	24	12	27	18	13
GGGTATCTTAGGTAGT	alt_728_missing	38	49	37	41	41	30	41	39	38	32
CTACGTGGTCTACTAA	alt_728_missing	0	0	0	0	0	0	0	0	0	0
AGCCGTGTTCAACTCA	alt_728_missing	7	13	4	4	16	6	8	5	13	4
CCGATCTATGCTCTGC	alt_728_missing	4	11	7	8	13	9	12	6	7	0
GCGAGTCGTAAGAAAA	alt_728_missing	11	3	11	3	9	2	2	12	12	6
CGAGTATAAACGGCAC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TTATATTTCGGTTTCC	alt_728_missing	52	47	68	43	31	52	42	49	55	47
TATGCCGGACACGACA	alt_728_missing	27	43	42	33	32	25	41	31	51	28
GTCAATATATAGGCAT	alt_728_missing	29	35	30	26	31	20	37	23	30	17
TGGACCCTGTGTGGGC	alt_728_missing	14	16	13	12	12	13	16	10	9	14
CGATGATCTCGTTGGG	alt_728_missing	43	37	56	51	37	46	61	35	56	40
GCGTTCGCTCGTTCGT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GCGGGGTCCTTGTTTG	alt_728_missing	56	82	77	72	91	55	75	47	92	43
GCTAACACCCGGACGT	ref_728_missing	8	7	4	7	9	5	6	8	6	4
CTAGATGACGATGACG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
AAGGTTTCGTCCTTTG	alt_728_missing	29	33	27	26	39	30	33	28	43	37
AGCGTGCCAACCGCGC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
ATAATCCAGCTCGCTA	alt_728_missing	61	95	80	77	87	56	109	63	75	69
TGGACTTGTGCTCTTG	alt_728_missing	3	10	7	10	10	5	21	12	6	6
GTCCCGGTCGTACGGA	alt_728_missing	3	9	3	7	14	4	8	2	10	6
CCACCGGCGACCGTTA	alt_728_missing	10	13	6	2	12	7	15	7	18	15
AACGGAACTATATATT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
ACAGCAAACTTACACA	alt_728_missing	17	34	18	15	24	14	32	13	34	14
CCCCCCTAGGAAAGTT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
CCCTCTTCATGTCACG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
CCGTGTCTATTCCGGG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TATTTGTAGCTTCTAT	alt_728_missing	2	10	8	11	7	3	9	1	14	13
CCTTGACAAGACCATT	alt_728_missing	10	6	11	10	8	13	13	10	11	8
CGATCTCTGGTCTTGT	alt_728_missing	1	1	2	0	2	1	2	2	3	2
GTCTGGTTTCTGACAA	alt_728_missing	34	44	47	39	54	41	46	46	65	33
AGGATAAGGACCCCAA	alt_728_missing	85	101	91	83	88	77	83	78	120	59
GCGGGGTGTTGCTGAC	alt_728_missing	13	19	33	19	32	24	34	28	29	15
TTAGTGATCATTGGCC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TGAGGTGTTTCGCAGC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TTTCCCCTGTTACCCG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
ATGTGGCTACTGCTCG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
ACTGGCGGTAAATACG	alt_728_missing	10	14	20	15	14	14	21	17	18	17
TTGGGCTATCTAGGCG	alt_728_missing	19	21	17	26	14	19	15	19	25	8
GTATCCGCTTTGGACC	alt_728_missing	13	20	18	8	18	9	18	8	17	13
CCACCCGGGCCCCGTA	alt_728_missing	11	12	14	8	9	10	10	7	4	11
CCAGGCTAGCGCAATA	alt_728_missing	0	0	0	0	0	0	0	0	0	0
AATAGAACTTTTATTC	alt_728_missing	5	11	1	2	4	3	5	6	4	3
ATGATTCACAATGGCT	alt_728_missing	64	72	119	92	83	88	87	56	92	74
GTAATCGCAACGTATT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GGGTACTCAAATACAA	alt_728_missing	0	0	0	0	0	0	0	0	0	0
CAGGTTCGACACTGAC	alt_728_missing	99	184	172	137	185	123	193	127	185	97
CCAGGTTGCGAGCGTT	alt_728_missing	22	32	47	41	46	43	47	39	45	25
GGTGACCCTGGAACTT	alt_728_missing	0	8	2	6	3	6	3	6	1	3
GAGTTTACGTCAATAC	alt_728_missing	29	41	44	41	58	52	64	40	57	28
TAACAAGGGAGTAATG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GCGGTCATCGCCAGTT	alt_728_missing	36	49	44	50	72	39	61	46	45	39
ATGCTTCGTGGGAGAT	ref_728_missing	34	25	36	32	39	14	46	22	42	29
TATTTTCGGGCAAGGG	alt_728_missing	14	16	14	13	26	12	19	33	31	16
CGTCACCTGTTCCGAG	alt_728_missing	27	57	35	31	43	27	54	35	56	25
TGCAACGAGTTTGGTT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TACGTCGATCTTCGTG	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GGGCAGATTACCTAGA	alt_728_missing	144	197	151	141	184	143	197	105	232	136
TACCGGGCAATCCTCG	alt_728_missing	62	104	72	73	86	55	93	50	116	54
TGGAGTAGTGCGGATC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GTGTGTTTCTTTTTCT	alt_728_missing	24	59	42	46	59	58	51	29	56	47
AGATTGTTGTCATTGC	alt_728_missing	38	46	36	37	42	24	35	32	35	24
TTCCATCTGTCCTTTA	alt_728_missing	17	19	13	23	16	12	28	11	16	9
ACATCTTATTGTCCCA	alt_728_missing	28	44	32	28	49	35	39	30	39	24
ATGCTTCATCATTTTT	alt_728_missing	0	0	0	0	0	0	0	0	0	0
GCTCAGCTTGGCAACC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TTTGCACACAACCTAG	alt_728_missing	2	1	1	2	6	4	3	1	4	2
TGTACCTAGTTCTTGA	alt_728_missing	1	4	0	3	5	2	0	1	1	4
TATCTTGAATTCGTGG	alt_728_missing	3	5	4	2	8	5	1	4	2	0
GGATTCACGATTGCGT	alt_728_missing	38	65	57	37	73	39	75	43	73	38
GCTGTCTATTACTGTA	alt_728_missing	0	0	0	0	0	0	0	0	0	0
TCGTAGTTTGCCGAAC	alt_728_missing	26	26	27	22	36	21	33	23	50	28
TCCCTTGGCGGTAGTG	alt_728_missing	16	26	19	19	35	14	20	20	31	22
ACAAGATCGTATGCGC	alt_728_missing	0	0	0	0	0	0	0	0	0	0
AGGTCGGCGTTTTTCA	ref_3161_RC	26	40	30	27	24	28	31	29	35	24
TTTTATTCATTTACGT	ref_3161_RC	6	20	16	17	17	15	11	16	18	10
CCACGCATATGTGCAT	ref_3161_RC	4	22	6	9	11	6	13	11	17	4
ATCCTTTAGGGATACG	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
CAATGCCCGTATCCCT	ref_3161_RC	7	13	9	7	11	7	8	4	13	6
TATCAATTAAATTGCT	ref_3161_RC	24	31	28	18	16	27	42	29	35	20
CCTTGTTGAGTGTGCT	ref_3161_RC	50	88	74	56	91	65	82	50	93	57
CGGATCTCACCTGCGG	ref_3161_RC	8	15	26	6	25	7	17	7	16	9
AGGTCCGGGCACAGTA	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
CCCACGCTTTTCTCCT	ref_3161_RC	26	37	36	39	57	16	60	22	46	30
GCGATATGTCTTGAGG	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
AGCATTGCGCCGCGCC	ref_3161_RC	33	41	73	46	53	42	42	27	61	37
CCTACGAACGTTCTTG	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
AATGGGGGTCTACGTC	ref_3161_RC	4	7	7	12	15	5	11	15	15	9
AAGTCTCTGATCTTGC	ref_3161_RC	20	19	21	19	26	24	23	21	29	27
CTCTGGAACATCGTCA	ref_3161_RC	7	13	7	4	3	3	10	8	10	6
GACGCGCATGATCGCT	ref_3161_RC	25	22	28	14	28	24	30	19	27	19
TTAGTGTATGTAGGAA	ref_3161_RC	15	17	13	11	16	12	21	10	26	21
ATGGTGCCCGCTTATG	ref_3161_RC	46	49	65	72	58	43	82	39	44	32
CCTATACGAGATAACG	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
CCAGTCAGCCGATTGT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
CCCCTTCGTGTAGGTC	ref_3161_RC	32	41	37	22	40	23	30	18	34	31
CTACCGTCTGGGTTGT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
AATGGGCAGTTTTTTC	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
TCTTGACAATTGTTCG	ref_3161_RC	34	64	45	28	83	38	96	33	103	37
GGTATGGTACGCTCTA	ref_3161_RC	11	16	7	12	17	11	16	5	16	8
CTATGTACTACTTGTG	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
TTGCCGCGCCGGCCAT	ref_3161_RC	14	13	16	11	14	12	20	14	25	13
CAATTTGTTCTGAGAC	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
TGTTTATCAGCCTGTT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
AGAGGTGTTATGTGAG	ref_3161_RC	41	63	59	38	75	40	51	45	73	36
TACCCCCCATACCGTG	ref_3161_RC	2	34	8	13	36	2	34	1	30	2
TGTATTGGGCGGCCTG	ref_3161_RC	37	48	38	58	54	33	40	40	53	30
CTTCCAAGATCGGTGA	ref_3161_RC	22	26	25	24	35	17	13	22	30	20
TTATGGTTTCCTGTGA	ref_3161_RC	2	5	10	5	4	2	5	2	3	4
GAAGCGCCCATTGGGA	ref_3161_RC	29	42	31	20	48	37	44	25	48	26
AGTGTAGATTCCTTAT	ref_3161_RC	5	13	19	16	21	12	17	13	20	13
ACTTGCAAGTCTTTCC	ref_3161_RC	46	49	44	42	56	49	50	48	49	38
GCTTGCTCCCAAAAGA	ref_3161_RC	4	1	6	4	5	4	2	4	11	4
GGACATCACAGAGCTT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
TTGAGGAGACGTCACA	ref_3161_RC	84	121	105	86	103	61	90	98	100	87
GCTGTTCCGCAGTATT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
TCTAGTTCCGCAGTAT	ref_3161_RC	35	56	30	26	39	35	40	32	40	24
TGCTCCTTTGAGCTTT	ref_3161_RC	55	79	78	69	102	48	76	43	87	44
GTAGGGGGAGTGGTCA	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
CTCCATCGTGTAGGTC	ref_3161_RC	15	26	19	8	48	16	30	22	23	19
CGCCCCGATCCACCAC	ref_3161_RC	4	13	14	7	12	5	8	9	8	2
TTCGGGATCGCCTTCG	ref_3161_RC	47	51	58	44	54	45	74	36	53	47
TACGCCCCACGTTATG	ref_3161_RC	29	40	53	46	27	33	55	33	55	27
TTTAACGATATATCCA	ref_3161_RC	12	10	13	13	11	19	14	10	7	5
TATATCCGGCAATGGG	ref_3161_RC	74	83	82	58	84	74	96	66	88	58
TTTCGTTGATCGATTT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
ACGCTCTAAAGGAATT	ref_3161_RC	5	12	14	8	10	12	15	8	14	8
CGGGGAGGTATTATGT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
GGGGCGCGTACGTCCG	ref_3161_RC	2	1	2	1	3	2	5	4	7	4
TGCATCTTTTCGGCGA	ref_3161_RC	48	62	46	36	55	35	55	44	78	31
CGGAACAATATCATCC	ref_3161_RC	14	16	10	8	18	11	19	14	22	11
GTGGCTTGCTTTCATA	ref_3161_RC	9	17	9	6	12	6	9	7	8	9
TATGTTTCATTCCCAA	ref_3161_RC	19	22	26	21	16	24	20	14	14	27
CCAGCACCACACGGCA	ref_3161_RC	22	51	27	29	39	27	45	18	40	18
CTAACCCATCTCAGTA	ref_3161_RC	16	15	15	15	16	14	14	14	15	16
CGTTTTTCGGATACTC	ref_3161_RC	23	25	57	30	43	22	38	27	43	32
TAGATGCGGGGGGGTA	ref_3161_RC	10	12	9	10	21	6	15	10	8	14
CCCATTTAGCATAGAG	ref_3161_RC	4	5	4	4	3	6	10	5	0	5
TGAACTCTCTGAGGGC	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTTTCGCATCAA	ref_3161_RC	66	71	63	59	101	47	82	44	79	61
CGGACGTACTACTGTT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
GTTTGATCACTTTTTT	ref_3161_RC	0	0	0	0	0	0	0	0	0	0
ACCCCCCTGACTGCGT	alt_2134_upstream	6	44	8	4	48	6	47	3	44	3
TTCCGGATGCAATATC	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTCACCAATATAT	alt_2134_upstream	32	38	31	24	41	22	54	24	36	30
GAATCGTCGGTAGCGT	alt_2134_upstream	7	10	9	7	9	9	11	4	14	6
CTTTGCTTGAGGGTGG	alt_2134_upstream	26	21	41	30	32	26	31	27	34	28
TCTCTCTGGAAGTCTT	alt_2134_upstream	41	44	42	37	60	34	48	31	44	37
CTGATTGTCCATGCGG	alt_2134_upstream	3	10	9	4	5	4	6	6	3	3
GGCCGGCTAAAGAAAT	alt_2134_upstream	45	38	37	29	48	36	52	35	54	22
TGTCGTTTGTTCCCAT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GTGTACGGATAGGCAT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTCATAGTCATCC	alt_2134_upstream	9	14	29	8	9	7	18	6	13	4
TTCATGGTCGCAGACT	alt_2134_upstream	14	26	19	9	14	20	25	12	15	19
TAGTTCACAAATCCAA	alt_2134_upstream	22	26	29	24	31	19	39	16	38	18
AAGCGTTTATTTACGT	alt_2134_upstream	9	7	3	5	10	8	8	6	7	6
TTACGATTGGTTCGTC	alt_2134_upstream	11	28	24	17	17	16	25	21	10	11
TCTATTACTAAGCATT	alt_2134_upstream	20	16	24	28	13	15	25	18	27	15
TAAAAATGCGTTTTGG	alt_2134_upstream	6	1	2	4	6	9	10	7	12	4
ACGTGAACACTAGGGG	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GATTACAGATCGTCTT	alt_2134_upstream	207	272	237	233	279	199	256	199	264	208
CCATAGTCTGCAGGTT	alt_2134_upstream	6	9	10	12	4	2	16	5	22	11
AGTACCTTCAGGCGTA	alt_2134_upstream	24	34	33	24	35	25	30	18	35	17
CTGTTCGCCCTAAAAA	alt_2134_upstream	38	38	32	34	35	18	42	24	41	27
AGCGGTGGCTACCTAT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
CGTGAAATGAACATGT	alt_2134_upstream	96	99	129	103	114	103	124	89	119	109
AGATAGACCCGGCGTA	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GATAATAATCCTTACG	alt_2134_upstream	41	37	36	24	65	31	50	41	47	35
CGTAAGGCGATTTTGT	alt_2134_upstream	26	25	38	28	18	20	25	22	36	26
GTCACGCTGTAGTAGT	alt_2134_upstream	7	21	24	13	26	9	23	17	25	11
GAAGTATTTCACGGCC	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCATGACTGCGT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTTGTTCATTTCG	alt_2134_upstream	121	107	99	80	126	79	153	64	130	88
CCTTGATCCTGCTCTA	alt_2134_upstream	67	75	84	51	56	51	75	57	72	48
CCCTTAACGAACCTTG	alt_2134_upstream	9	19	8	14	21	11	31	7	24	7
GGTACAGTCGCGTTCA	alt_2134_upstream	36	36	34	30	53	28	44	27	44	24
AATTACGTTCCACATC	alt_2134_upstream	34	33	19	36	43	43	30	31	55	38
ACGACCTTAGGCGATT	alt_2134_upstream	51	79	62	58	56	58	71	49	89	56
GGGTAATTATCTAGCA	alt_2134_upstream	63	56	48	61	78	48	105	55	72	63
TGGTATCTGATACACA	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
ATGGACGGTCGTCACT	alt_2134_upstream	20	25	36	27	31	26	31	22	31	25
GCTGTTTATCCTCCTT	alt_2134_upstream	59	54	58	59	47	49	57	29	50	46
TCGTGTCTTCGGGTTT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GATCCCTGTGCATATA	alt_2134_upstream	5	12	9	7	14	10	13	7	14	8
ACGTCGCCAAATGCCT	alt_2134_upstream	41	38	48	34	45	43	38	32	44	26
CACTATATGATAGGCG	alt_2134_upstream	237	259	227	186	303	192	328	212	365	183
CGTAATTAGAACAGGG	alt_2134_upstream	75	78	85	80	81	55	96	90	73	62
TCAAGAATGAGGTTTA	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTGGAGAGTGCG	alt_2134_upstream	5	11	8	4	3	10	10	6	14	10
GATTGCAGATCGTCTT	alt_2134_upstream	0	1	0	1	0	0	0	0	0	0
CCGGGCAGATTCGTCT	alt_2134_upstream	6	6	4	7	5	4	6	2	6	3
ATTTTCTAAAGCCCTC	alt_2134_upstream	64	85	84	87	80	57	81	59	90	73
TGGTCCTTGGTGCTAC	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGCAGTATACGAG	alt_2134_upstream	72	93	65	52	79	64	87	70	84	40
TTTTAAGTTCGTACCA	alt_2134_upstream	7	16	14	12	28	12	21	14	14	9
TTTCGCTAGCGCAATT	alt_2134_upstream	7	15	15	8	23	13	18	8	16	6
GTAGGGCCATACGAGG	alt_2134_upstream	6	18	12	11	12	9	21	16	11	10
GTAAGGCGTCGAACAA	alt_2134_upstream	27	37	28	30	52	27	47	27	35	27
AATGTTTCGGACAGTT	alt_2134_upstream	3	1	2	3	7	2	2	5	10	3
ACATGCTGGCGTCCGG	alt_2134_upstream	32	37	35	36	61	19	46	26	40	32
CCCAAGCTTTTCGTGC	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
CGTAAATGGCATCACT	alt_2134_upstream	6	5	7	1	4	4	12	5	11	6
TCTATTTGGTAAATTC	alt_2134_upstream	297	296	349	276	340	247	315	257	340	278
GAGATCTTTCACTGTT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTACGGGAACCGG	alt_2134_upstream	13	26	21	13	17	7	25	23	27	19
TTTCTGATTCTCATGT	alt_2134_upstream	64	86	78	69	74	50	99	58	74	30
GAGGCCCCGCATCTTA	alt_2134_upstream	1	2	5	4	3	6	5	2	0	1
TAGGGTTTCTCATTAC	alt_2134_upstream	42	55	64	45	70	49	73	33	63	39
AACCCACGGGGTCTAG	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GCATCTGGAGTATCTC	alt_2134_upstream	35	47	44	36	54	18	38	25	36	23
AAGTCCAAGAATTTCT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTGGGTCTCCTCA	alt_2134_upstream	26	30	30	22	40	21	34	30	38	18
GTGGATAGTTATCGGT	alt_2134_upstream	97	113	103	105	117	97	112	61	112	67
TCATTTTTAACACATC	alt_2134_upstream	22	38	33	31	44	29	44	26	44	31
CTTATAGCATTAGAGT	alt_2134_upstream	34	55	46	40	72	45	76	33	72	40
GCTCGGGCGCCTTGGG	alt_2134_upstream	4	2	4	6	9	7	9	1	3	4
TCGCGGGCCTCTTTCA	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
TATGGACTGGCCGGCA	alt_2134_upstream	190	183	194	164	220	164	184	168	233	146
ATAGCAATGATTGGCC	alt_2134_upstream	34	37	33	33	43	25	59	28	44	33
ACATGATATGTGTGGG	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTGAGACAGGAG	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
GGCTATTTTAGAATTT	alt_2134_upstream	0	0	0	0	0	0	0	0	0	0
ATGCACTAACCCGGAA	alt_2134_upstream	1	5	4	2	4	2	6	1	6	4
CTGACACCTTTATGTT	alt_2134_upstream	20	33	29	13	26	15	29	20	28	18
AGCGCTTGAATGTTTT	alt_2134_upstream	9	4	3	3	9	5	13	1	4	5
TGCGGAGTCTATTTCG	alt_2134_upstream	26	41	48	32	43	27	47	31	38	27
AGTTAATGAAGCAGTC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
ATGCTACTAAATATAT	alt_1416_RC	56	42	69	58	33	54	41	57	40	58
TCCTACGTCGTGACAG	alt_1416_RC	4	11	2	10	4	9	7	5	13	6
GGTTGGGATTACTACT	alt_1416_RC	6	7	15	10	10	18	7	9	10	11
GCGACCCTCTTCATCG	alt_1416_RC	12	5	25	7	7	10	9	18	10	13
CTCTCATGCTCGGTTT	alt_1416_RC	25	14	32	18	15	18	21	15	17	24
TCTTTCCTTGGACGTT	alt_1416_RC	33	16	37	26	21	19	14	24	22	21
AAAAGTTTGTCGTTAT	alt_1416_RC	4	4	4	10	3	3	5	5	5	7
CGGCATTTTGGAAATG	alt_1416_RC	147	93	192	130	89	158	107	132	114	126
CACCTGATTAGGTCCT	alt_1416_RC	42	58	65	48	57	37	35	44	56	35
AACTTTCTGATGCCCT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GTGTGGTCGTCCTGTA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTATCCGCGAGC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GTATTAACTCCTCCGT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TGGAAGAACTGGTGAT	alt_1416_RC	55	52	60	72	27	48	55	57	37	49
TGTTCGTCGTTAACGC	alt_1416_RC	48	39	100	58	52	62	43	57	70	65
AATTTTGATACCTTGT	alt_1416_RC	5	6	22	8	5	8	9	12	9	11
CGTACCAGATGGCAGT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
ACTGAGTTGCCCAGTA	ref_1416_RC	19	16	25	15	11	11	9	17	18	27
CAAAGTCAGGTTTCTT	alt_1416_RC	19	9	28	26	18	25	15	28	17	14
GTTCATCGGGTGTTTT	alt_1416_RC	38	40	58	38	24	30	38	43	32	24
ACGCCCCGTGCTCCCT	alt_1416_RC	7	7	4	7	5	4	5	14	3	5
TCCTAGGGGGCGGATG	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GGGTGTCTTAGAGTTC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GAAAAAAGATGCATAT	alt_1416_RC	62	44	82	68	63	94	53	69	61	60
GGGTAGTGCCGGGTCA	alt_1416_RC	7	1	4	9	3	2	5	3	2	3
TGATTGTCTGCGTTTA	alt_1416_RC	33	18	23	33	23	19	27	18	33	32
CCCAGTCGGCCACTCA	alt_1416_RC	51	31	78	65	43	55	44	67	50	56
AATTTATTACGTCCTC	alt_1416_RC	55	34	59	45	28	32	41	35	46	37
TGCCTGTTGCAATTTC	alt_1416_RC	24	23	30	26	15	19	25	22	19	27
CACGTCCCAGTGCGTT	alt_1416_RC	25	15	23	19	18	18	12	34	18	21
CCAAAGTCGGGCTTTC	alt_1416_RC	4	3	5	2	3	1	7	2	8	1
TATAGTTGCGCCTTAT	alt_1416_RC	8	15	17	14	7	13	10	10	10	8
CCTGCGGCAATAACTG	alt_1416_RC	10	11	9	9	10	10	5	3	14	12
GTGCACAATCAAAGTG	alt_1416_RC	41	23	55	41	38	36	31	46	31	41
TAGACTTCTTTAGCTC	alt_1416_RC	462	324	556	485	387	448	372	481	364	409
TTGGGATAGTACTACG	alt_1416_RC	40	26	44	29	15	40	33	31	29	33
TAAAGCTTCCATCGTT	alt_1416_RC	26	16	35	18	8	24	24	17	21	17
GCGTTATTTTGCTACA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GGTTCGTATTATACAT	alt_1416_RC	162	115	164	154	130	144	142	148	132	108
CGAGGCTGGTGGTACA	alt_1416_RC	37	29	45	40	34	39	29	33	34	41
AGAGTCTGCTCGATCT	alt_1416_RC	0	0	0	0	0	0	0	0	1	0
TGTCTCACAATCCGCA	alt_1416_RC	100	88	147	122	95	96	92	125	69	100
AATCAAAGAACGAGAA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CAATAGACGCAGTTGC	alt_1416_RC	54	50	85	48	44	57	50	61	45	58
CTTCTTTGGTTACTTC	alt_1416_RC	26	20	37	34	32	25	33	40	35	25
CCGTCCGATGCGATGC	ref_1416_RC	6	4	8	11	4	8	6	9	5	7
GAACCTTTAGGAAGCA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CTCTATCGGGGATTGT	alt_1416_RC	8	6	9	12	13	18	3	7	18	6
ACATCCCGGTTTTTCT	alt_1416_RC	38	24	32	33	19	19	20	21	24	27
GTTACCATGCGTTTCG	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CGTTCCTTCTTAGTAA	alt_1416_RC	68	42	89	51	38	43	46	61	32	50
TTTTTCGCTTTGAATC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTACTATATAGA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CAACACGTGCCACGAC	alt_1416_RC	93	54	131	106	68	88	79	75	77	67
TTGTTCTTACCACAGT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTTTGGGGATCT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CTCAATGAACATCCTT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CAGCTATATGACTCTA	alt_1416_RC	32	27	39	40	33	38	22	42	39	35
GCGGCACCATTTGCGC	alt_1416_RC	12	3	10	7	7	6	7	5	6	2
TAATGTATTATAGTTC	alt_1416_RC	80	58	106	95	58	79	76	102	44	77
TGCGACAAATGCGCCG	alt_1416_RC	102	94	134	133	84	81	72	116	75	85
TCCTTTCCTCGTTGTG	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CACAGCCATTCCGACA	alt_1416_RC	57	71	65	77	60	67	51	51	72	50
CTGACTCATACCGTGT	alt_1416_RC	40	22	39	21	21	30	25	34	28	21
ATTGTGTCAGTGTTCT	alt_1416_RC	8	9	12	8	4	11	8	14	2	7
AGCGTCTGCTCGATCT	alt_1416_RC	197	150	250	236	148	224	155	231	158	199
GTGACCGCACAGTACG	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CTAGACAAGACGTGAT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TCGTAAGGTACTTATC	alt_1416_RC	22	16	24	23	24	20	20	21	10	12
TTACCTCGAGAAATTC	alt_1416_RC	33	23	31	29	21	30	20	38	24	22
TAGGACTGAGCGCGAA	alt_1416_RC	62	50	84	79	44	61	48	57	61	73
TGAACCTGTGCCCAAA	alt_1416_RC	71	38	97	79	52	65	44	65	63	56
TCTGGGTACTGCACAG	alt_1416_RC	25	23	28	25	34	33	32	28	38	27
GTGCGGGGATTATTTG	alt_1416_RC	14	16	12	14	6	11	15	4	20	11
TCGTTCTTCGGATCTA	alt_1416_RC	93	64	106	94	58	87	59	82	70	61
ATCACCGAGTTTCGCC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
ACAGATGCCGCTGGAT	alt_1416_RC	131	80	138	145	94	90	89	111	110	107
TTTGGTTTGGTACCTA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TGGTTACTAAACGTTT	alt_1416_RC	1	1	3	1	2	1	2	1	3	2
TGATCGCCTCCATTCC	alt_1416_RC	357	267	468	384	283	355	296	364	314	324
CTTTTCCCGATTGCTA	alt_1416_RC	54	27	61	59	54	53	49	42	43	54
TTCGATGCGTGTAAAT	alt_1416_RC	144	80	163	164	83	147	105	141	110	130
TCCGGTTTGGTGTTCG	alt_1416_RC	118	104	156	128	100	107	87	135	107	104
CGTCCTTGTCCCTTAG	alt_1416_RC	72	39	81	73	61	69	60	71	60	71
TGTGGTAATTTAACGT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GCTTGAGGGTATCGGC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TCGGTAGTACTCATCT	alt_1416_RC	59	62	77	72	72	56	48	66	50	49
GTGCAGCATTTTGGTA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
ATGGAGGAGGAACAGA	alt_1416_RC	148	126	167	156	112	126	102	130	107	115
CTTCCCTATCTCGCGC	alt_1416_RC	11	14	23	17	25	16	19	11	18	12
CCTTTTCAAGCACAGC	alt_1416_RC	161	88	166	152	94	123	93	133	87	114
ACCTAGAAGTGGGCGT	alt_1416_RC	63	51	66	40	50	40	60	52	61	57
TCTTTAATACAGGGCT	alt_1416_RC	31	37	42	38	20	31	34	28	28	31
TGCTGTCGAAACTACG	alt_1416_RC	20	6	21	11	15	10	10	19	11	19
AATTAAAACCCCGTCC	alt_1416_RC	39	39	49	50	39	28	45	39	49	26
TATTCAGGCTTATTGT	alt_1416_RC	20	11	25	30	17	23	10	14	12	15
TCATGACGTAACCATT	alt_1416_RC	233	118	278	232	126	243	154	219	167	217
GTGACTGGCGCGTTTC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
AGCTCACCAAAACTTA	alt_1416_RC	4	7	13	9	12	12	8	10	14	12
CTCGTGCCGCACAGCA	alt_1416_RC	1	1	6	1	4	2	4	8	7	7
GCGTCTTCCAACAGGG	alt_1416_RC	42	27	51	51	16	28	36	30	33	36
TCAATTCTACCGGGGT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GTCATTGAATTGGATC	alt_1416_RC	74	48	89	77	47	53	51	54	59	47
GGGCTGGCTCAAAACG	alt_1416_RC	70	38	70	57	41	46	38	50	30	41
GTCGCTTTCGGTCGGA	ref_1416_RC	109	79	157	114	77	99	67	105	62	106
GCGGGACGGGTCGAGC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CTTGCCGGTATTCTGC	alt_1416_RC	9	7	10	10	4	15	6	12	5	5
TGTGCGGGAGGGCGCG	alt_1416_RC	41	31	74	59	34	45	40	36	40	26
TTCTCGCCTGTTAATA	alt_1416_RC	23	22	25	25	23	13	22	27	19	27
CATCCTCGAATCATTC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TTGTACGAAGACGCGG	alt_1416_RC	9	12	18	6	11	8	12	16	6	10
CGCGCATATTCTTATG	alt_1416_RC	6	2	8	7	3	7	0	3	3	2
TCCTAGGGCACTACCG	alt_1416_RC	24	18	30	34	28	32	18	27	25	29
AATCCCATGTTGGACC	alt_1416_RC	77	60	81	77	48	73	43	62	70	89
CTCCGCGGCCTTACGG	alt_1416_RC	5	0	3	1	1	2	0	4	4	1
GCGTACCCCCGACGGT	alt_1416_RC	2	7	5	2	5	3	4	4	6	1
TTTAGTATAGTCCCAG	alt_1416_RC	25	9	24	30	15	24	18	22	18	20
CGGTACAACGCCAATC	alt_1416_RC	92	84	97	95	79	64	80	68	89	74
AGCAGTGTACCTTGTT	alt_1416_RC	8	4	9	8	7	8	9	11	6	9
TACGTGGGGGTATCTT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TGAGGGGATTTGTTGG	alt_1416_RC	66	37	87	62	55	57	36	53	48	60
TACGTCGGAAAGATCG	alt_1416_RC	220	154	276	198	153	220	151	201	183	185
ACGATTCAGGAATTAG	alt_1416_RC	72	59	117	95	57	70	66	90	66	62
GGCCTTCTTAAGCTTC	alt_1416_RC	4	15	12	11	7	15	9	7	7	11
TTTATCTCAAACATAA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GCTTGTCCCTGACCAT	alt_1416_RC	23	32	32	36	37	17	35	18	44	24
CTGGTCGATCGTGACC	alt_1416_RC	18	4	10	10	9	14	7	10	5	7
GACTATATAATGGCGA	alt_1416_RC	34	21	31	20	20	25	12	14	18	19
CGTTTTGATAGAGTCT	alt_1416_RC	36	34	42	20	21	37	29	20	24	25
CTAAAACGGGTTCAGG	alt_1416_RC	22	18	21	17	17	20	11	14	16	24
AACGGTCTGGCCATCC	ref_1416_RC	6	6	10	8	10	7	9	7	10	13
GCAGCAATGATTTATT	alt_1416_RC	24	16	42	29	9	31	18	38	22	24
CTCTATCAACCATTTG	alt_1416_RC	29	30	32	31	31	27	39	20	33	16
GTTACCCGTAACGGTC	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
TGCCCATCTCGAGGCT	alt_1416_RC	7	8	10	5	5	7	11	7	1	4
AGGTCCTATGTCGGGG	alt_1416_RC	10	6	14	6	8	3	4	8	7	6
ACCCGGCCGCTGTGAT	alt_1416_RC	7	10	10	8	5	12	13	17	11	4
GATAACCTCATGGTGA	ref_1416_RC	116	61	118	89	64	99	89	89	74	73
AGACCTTAGGAAAGGC	alt_1416_RC	9	4	12	4	4	8	4	4	7	6
TCTGTGCTGCCACCAT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GGACGGTTAAGTTTGT	ref_1416_RC	8	9	10	5	7	11	4	2	9	2
ACGGGTCTTTATGCTT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GCAAATGTTTCAGCCG	ref_1416_RC	126	120	149	144	109	140	132	127	133	94
ATTATACTGTGCGGTT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CATGGCCATCGACTGG	alt_1416_RC	16	19	43	40	32	32	25	35	22	21
TCTTGCGTTACTGCTT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CAATGTACCACCGTGA	alt_1416_RC	47	29	45	48	34	43	30	43	24	48
CGTACAACGGTATCAC	alt_1416_RC	29	21	49	31	34	39	34	50	28	25
GTGATGTAGCTGTGTT	alt_1416_RC	38	34	43	35	50	37	42	44	25	38
CTTCTTCTTCACCATC	alt_1416_RC	49	25	55	40	31	48	39	40	30	32
TGGCTCGCATGTAGCC	alt_1416_RC	23	15	14	19	12	9	16	20	19	18
AGCTATGTTCTAACGC	alt_1416_RC	39	28	46	34	28	48	28	37	33	20
CTGTATTTCCGGTAGT	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
CAGAGCTGCTAATGTT	alt_1416_RC	89	116	148	139	102	132	99	125	103	106
AATGTCATGTAGTCCC	alt_1416_RC	92	66	110	116	93	107	73	102	106	83
CTTTTCCGGATTCTGA	alt_1416_RC	69	61	90	58	61	72	65	74	48	65
TCTCCCCAACTTCGAG	alt_1416_RC	31	28	29	32	22	22	24	25	30	21
TTCCATGTTTTCTAGA	alt_1416_RC	0	0	0	0	0	0	0	0	0	0
GCTCTGCATTAGGGTG	alt_1416_RC	41	27	47	43	31	36	40	34	44	30
ATTGTCACTCGGCCTA	alt_1416_RC	170	168	218	190	148	144	156	122	151	158
CATGTTCCCTCAGTGT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CTCCCTTACGTTTACC	alt_6097_new	12	22	23	16	28	11	25	9	19	9
GCTTATACGGGAAAGC	alt_6097_new	22	26	22	20	38	10	27	12	38	12
CCGTTACAGATACCCT	alt_6097_new	12	17	10	13	29	12	28	9	20	16
GAAAATTTCATCGACT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TGCAGGTACCCTATTT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TCATGATTCTCTTGAT	alt_6097_new	11	14	10	16	18	20	14	11	15	12
ATGATATCGGTAAATC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GACACTTCGCATCCAG	alt_6097_new	58	73	75	82	92	56	85	57	114	42
TGGAGGGAATTAGTGC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TGAACTACCCTAGATT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CTCATTTTACGGGTTT	alt_6097_new	14	18	20	11	13	7	17	13	17	9
TTAAACGAGTCTTTAA	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CACCGTATCTTTCGGC	alt_6097_new	34	57	53	25	67	47	65	24	76	26
ATCATACTCGCGTGGC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
ACGTCATGATTCTGGG	alt_6097_new	34	37	47	38	41	35	53	39	45	28
TTAACTATGAATCTGT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GATTACGATCCTGCCT	alt_6097_new	30	35	27	15	33	23	24	24	30	26
TTATTTAACCTCTGAA	alt_6097_new	9	6	10	13	9	4	6	1	7	6
TTTAGTAATTCACTAA	alt_6097_new	8	14	11	7	13	13	8	5	7	11
ATATTAGTCCAAACGT	alt_6097_new	5	11	9	9	13	13	15	16	22	9
ATTCATGCTTATACAG	alt_6097_new	123	191	133	120	235	93	201	108	186	103
TTGGTTAGTCTTCCTT	alt_6097_new	131	194	185	143	166	137	164	127	214	115
GCTAGTCGGTAAGGTC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GTGTTGTTTTTCAGGC	alt_6097_new	10	27	29	16	33	20	21	16	27	14
TACTCGTATGGAGTAT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TCATATGACACCCTTG	alt_6097_new	22	32	25	31	45	31	25	14	29	17
GATGATTTTAAGTTCG	alt_6097_new	6	6	13	6	17	9	6	7	10	3
GTTAGCTGCCATGAGA	alt_6097_new	31	54	48	25	57	35	64	27	61	39
ATCTACTTGAAAACGT	alt_6097_new	8	16	16	6	27	5	8	16	14	15
TGAGCCTATGTCCCGT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
AGGCATGCCGGGTATC	alt_6097_new	13	12	11	13	13	10	13	19	16	6
AATCATGCTTATACAG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
AACGTCAGTCCACAAT	alt_6097_new	14	15	14	5	8	10	5	7	13	4
CTGTCGCTGAATCATT	alt_6097_new	264	385	329	312	415	283	393	311	416	247
CTGCCTAATCTTCCGT	alt_6097_new	26	51	27	21	45	9	45	15	59	19
AGGTATTATATCATAA	alt_6097_new	26	60	47	39	45	26	50	36	45	27
CATATGTAATCTCTGT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TACTTCCAAATATCCT	alt_6097_new	28	48	29	26	60	26	53	34	35	35
GCTGCGTTCGCCCTGC	alt_6097_new	39	64	24	29	60	28	70	48	73	40
CGAATCGTTGTACACC	alt_6097_new	10	28	22	13	15	13	21	6	13	12
CTTATTAGGTTCTCTT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GTGAGGTTTGCTGACC	alt_6097_new	3	4	3	3	6	1	4	2	6	3
CATGTTCCTTCACGTG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GGGTTCAGTTTCGCCT	alt_6097_new	18	18	18	9	33	13	22	11	32	18
TGGTACGGGATAATTA	alt_6097_new	16	24	18	8	36	15	29	7	23	12
GATGTATTCTTTTGTT	alt_6097_new	13	15	12	13	27	14	22	21	16	7
TGTCGTCACTAGGTGA	alt_6097_new	249	306	268	211	339	234	325	228	326	198
AATCATGACCTAACTT	alt_6097_new	5	6	7	3	10	11	8	3	7	5
ACTAGTATACAGTGGA	alt_6097_new	0	0	0	0	0	0	0	0	0	0
ATTTCCGGCACTCTAT	alt_6097_new	32	45	47	26	35	32	43	34	39	28
CGTGCAACTTATGATT	alt_6097_new	2	4	7	1	2	5	5	3	5	2
ATTAGGTTCGATAAGG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CTAGCGCTCTAAAGGT	alt_6097_new	55	75	64	45	96	40	85	40	81	35
ACGGGATGGTCAAACG	alt_6097_new	5	5	0	3	4	2	5	7	7	6
TCTACCCACGGTTCTT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TTGTCCGTCGATATCG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TACGAGCTAGGGCAGT	alt_6097_new	24	27	20	21	33	19	25	18	38	20
GGGAACTGTTTTCGAG	alt_6097_new	19	30	21	16	32	14	23	13	32	17
TCTTACAATCATGTTC	alt_6097_new	135	202	166	160	190	126	178	120	208	146
TACAGTATTTGGGATC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CCAAGAGGGTTCGTTC	alt_6097_new	56	56	67	52	86	52	70	42	75	43
ATCCCTAGACCATCTA	alt_6097_new	0	0	0	0	0	0	0	0	0	0
ACCCTTGACAACTTTC	alt_6097_new	4	25	10	6	13	12	14	4	15	9
AGTGAATTGTCTGTAG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GAAGGTTAAGGAACTA	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TGGGTCTTGCCTGTTT	alt_6097_new	1	0	2	1	0	2	3	1	1	3
CGCATGCTTTTTGTGC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GACAGCAATGGTTCCT	alt_6097_new	25	39	42	36	48	43	57	32	52	47
TATAGCAAAACGTGAA	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GGTCTGCTTCACCGGT	alt_6097_new	6	11	11	7	8	7	9	4	12	14
GGTGATGTGGGGATTA	alt_6097_new	17	39	30	39	41	28	64	28	39	21
ACGGGGGAGGGATTGT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GATCCAAAGTGGGAGC	alt_6097_new	9	8	9	12	8	14	10	5	14	8
ACCCCCGTTCGTGTGG	alt_6097_new	67	83	78	78	78	53	87	71	90	59
GTCGTCTGATCGCAGC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
ATATGCCTCCGCCCTT	alt_6097_new	2	10	10	11	15	4	18	6	12	5
TTGGTGTTTTATCCGG	alt_6097_new	19	36	34	28	38	26	43	23	56	23
ACGTAATTAACGAAGG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TGGGTGCCTCACGACC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CCCGGAGTTTAGTCGA	alt_6097_new	0	0	0	0	0	0	0	0	0	0
CTAGGAGTGTTAGCGG	alt_6097_new	0	0	0	0	0	0	0	0	0	0
AGTGTTACTATTAACT	alt_6097_new	35	50	40	36	50	30	54	31	46	25
CTCAATAACTGTTGTG	alt_6097_new	18	22	17	18	19	19	42	22	50	13
ACTACGATTAATCCTA	alt_6097_new	15	29	15	22	19	13	29	14	32	10
TTTTATCCTGAAGCCA	alt_6097_new	10	13	21	7	17	11	19	12	19	7
ACCGTCGCTCTTAATT	alt_6097_new	32	76	29	37	94	25	90	25	88	27
CATGGAGGAAAGCTCT	alt_6097_new	18	22	28	18	15	23	20	20	29	15
AGGAGAGAGGTTGATC	alt_6097_new	107	171	113	128	149	96	175	93	193	108
GTGTGCTTCGTGCCTT	alt_6097_new	0	0	0	0	0	0	0	0	0	0
GTGTGCTGTTATTGTC	alt_6097_new	0	0	0	0	0	0	0	0	0	0
TTTTCCGGAGTCCATG	alt_6097_new	5	28	12	15	22	17	30	12	25	13
CGCACCTTGTTCAGTG	alt_850_reverse	7	11	1	3	12	7	9	6	18	0
GCTGTGCAGCCATCTC	alt_850_reverse	69	130	83	70	133	73	139	66	124	73
TGCGCGCAATACACCA	alt_850_reverse	32	50	35	26	48	26	60	18	58	28
TCTTCCATTGGGACTC	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
ACATTGTCCTGCAAAC	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTAAGATTTAAGG	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
TTCAACAAAGCGTACA	alt_850_reverse	13	9	9	6	13	8	11	14	14	7
CTGCACGCCTGAGTCA	alt_850_reverse	64	117	83	65	116	44	134	50	167	69
TTTTGTGAACAAGAAT	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
CAAACGCTGATGTATA	alt_850_reverse	25	63	34	29	69	28	87	24	77	28
AAAGCCCGGCCAGGTC	alt_850_reverse	10	10	4	5	13	8	9	7	15	3
TTGTCACGGCTAATTT	alt_850_reverse	23	60	35	26	30	19	51	18	40	23
GTCCATTCTGTCGAAG	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGTTGAGTTCTGT	alt_850_reverse	9	19	21	14	25	10	21	12	24	22
GCATATCGAGGGCCAC	alt_850_reverse	20	44	32	22	44	30	44	19	38	37
TTATACAACGGTTAAG	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
TACCAAAATGCGTCCA	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGTGCCATTCACC	alt_850_reverse	33	70	30	36	59	24	56	22	86	27
ATTGATGTGATTTTTT	alt_850_reverse	24	51	31	32	40	22	58	28	62	22
CGACAGGAAACTGAGA	ref_850_reverse	10	23	11	15	24	14	23	12	21	11
TCTGAAATTGATCAGG	alt_850_reverse	71	107	65	59	123	45	140	34	133	62
ACATGGGTTGGTGGAA	alt_850_reverse	6	4	11	5	7	2	10	7	12	8
CCTCCGCTCCTTAGGA	alt_850_reverse	48	84	57	55	97	29	111	42	103	50
TAGTATCTCTTAAGTG	alt_850_reverse	14	28	27	18	52	22	60	15	59	19
GGCTATACCGCTTGTT	alt_850_reverse	76	138	93	63	139	75	132	80	121	71
GATTTGTTTGGTTGGT	alt_850_reverse	12	24	17	14	32	18	32	22	34	11
GCACACTGGACAAGTT	alt_850_reverse	14	43	23	20	35	16	46	16	32	16
GCAGGGCTACTGAAGT	alt_850_reverse	60	149	75	74	138	66	157	56	147	71
AATTACTTTCAGGCGC	alt_850_reverse	15	36	29	28	35	13	34	17	32	29
CATGGTTTCTTATCAT	alt_850_reverse	25	38	22	23	65	31	44	18	51	19
CGACGTAACGAAGGAA	alt_850_reverse	7	7	8	1	11	5	12	2	10	2
GGGCTCGGATCGCCAT	alt_850_reverse	7	18	18	15	28	16	20	22	21	13
TCCGATCAGACTTGTT	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTCCGAGCGCAAT	alt_850_reverse	17	64	21	18	44	24	47	25	46	26
CTGGTCCTCATCATTT	alt_850_reverse	3	2	4	1	4	5	9	3	7	4
ACCGAATATTGAACGA	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
CGGGCCCTACTCAATT	alt_850_reverse	52	86	41	43	64	36	84	38	86	58
TGCTGTATCTGTCTTC	alt_850_reverse	14	41	30	17	37	30	41	20	35	18
TTTCGGAGCGGTGAAT	alt_850_reverse	101	175	112	63	155	96	197	82	221	88
AGGCTTCCTATTTCAC	alt_850_reverse	14	37	22	16	36	25	34	14	44	16
GTTATGTTCAAGTTTC	alt_850_reverse	14	23	18	13	29	16	47	15	37	11
TACTCTGACCCCCGCC	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
AATATGGGTATTCAAG	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
CACATTTATTGCACGT	alt_850_reverse	21	49	21	16	44	27	52	19	48	27
TGCTTTGACTTGTTAA	alt_850_reverse	8	24	13	19	43	14	23	10	33	10
CAGTTGGCGGGTTGTA	alt_850_reverse	29	43	51	30	68	27	45	27	55	17
TCTAAGGTGACACTCA	alt_850_reverse	30	45	32	27	75	33	73	24	71	32
ACACGGTCGTGACTTG	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAACTAGCCTATA	alt_850_reverse	23	45	30	26	49	17	65	24	55	17
CCTCTTCATTCTCCCT	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGTTGACACTCGG	alt_850_reverse	18	42	20	14	45	18	38	13	57	14
AAGTACACTATGACGG	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
CGAAAAGCGTTCTGGG	alt_850_reverse	73	147	85	67	161	88	165	79	156	64
TGTGTGATATACCCTA	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
TATGGTAATCGCACGG	alt_850_reverse	4	20	8	6	22	8	16	6	19	9
CCCACAAAGTGATGCC	alt_850_reverse	6	14	16	4	10	10	17	8	20	12
TGGGTTCCTGGCCCCC	alt_850_reverse	11	20	8	9	21	12	13	10	19	6
AAGTGCCTGCCTCTTC	alt_850_reverse	14	30	14	18	26	21	36	19	27	12
ATACATTATTAGTGTA	alt_850_reverse	30	58	35	25	57	18	49	30	54	26
TAGTGTCCCATGTTCT	alt_850_reverse	20	40	30	27	34	15	44	21	41	24
TGTACTCCTTAATCAA	alt_850_reverse	26	51	36	14	58	17	53	19	57	24
AGCTGGATGGAACAAT	alt_850_reverse	1	3	4	0	3	1	1	0	2	1
AGGTCATGAATAACCC	alt_850_reverse	31	94	51	22	71	28	84	47	76	36
ACGCCCGTATAGTTAC	alt_850_reverse	14	41	10	11	41	3	49	10	43	6
GCATACTCGCTAATTG	alt_850_reverse	7	12	5	5	14	7	16	7	17	7
TATGACACCCGCATAA	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGGCAGATTTCAA	alt_850_reverse	13	25	18	16	24	15	28	9	37	8
TCTTCGCGTTTTCTGT	alt_850_reverse	24	39	35	27	39	33	46	28	55	31
CACGAGTTGCTGCTAA	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCTCTGTAGAAGT	alt_850_reverse	7	13	12	5	10	7	17	10	14	8
TCTCCAATATCTGTTA	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGTCCAATGATGC	alt_850_reverse	0	1	0	2	0	0	4	1	1	1
TCATGTTAGGCCCGTT	alt_850_reverse	3	4	3	7	6	5	8	4	3	9
TATCATACCATCTATG	alt_850_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCTCTAAAGCCTG	alt_850_reverse	8	7	5	3	7	2	4	3	5	6
GCACGAATCGACCGAA	alt_5486_fdr	27	39	36	40	46	37	49	29	33	25
CCACGTGAAAGAGATT	alt_5486_fdr	6	13	18	12	12	13	12	9	11	11
ATTTTTCTAGGATTGT	alt_5486_fdr	3	4	4	10	4	7	4	3	8	4
AACGTTCTAGGGGGGA	alt_5486_fdr	83	64	94	73	78	83	95	85	97	64
CGCTCAGACAATTTCA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCGCTTTTCGGTG	alt_5486_fdr	42	44	50	39	45	27	47	29	42	31
GGCATTAGAATGTGGG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TGATTAAGATCTTTCC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGTTAGCAATCTC	alt_5486_fdr	10	8	9	6	11	16	13	9	11	8
CACAAATTAGGCGGGG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCGATGAGCGTAC	alt_5486_fdr	1	1	0	0	3	1	1	0	1	0
GGACATGGACATTGTG	alt_5486_fdr	7	13	8	9	14	6	8	4	12	10
ACAGTTCTTACACCTG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCTGCATCCGAAC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CACCTGGTTCAATATC	ref_5486_fdr	68	77	102	65	85	79	72	70	97	53
CCAGACGTACGGTCTA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GATGCGGCATCGCATA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTTTACTGATGATCAT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
ATCATCACCACCTCGA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTCATTTTTATTT	alt_5486_fdr	9	5	9	11	15	6	7	6	9	7
GACTAATCGAACTCCG	alt_5486_fdr	33	39	29	29	43	26	21	24	57	31
TACCGACAGCGCGTAA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGCTTTTATATTG	alt_5486_fdr	4	4	4	1	4	9	3	6	10	5
CAGCCCCGTACAGTAC	alt_5486_fdr	24	43	23	28	39	6	41	24	45	7
CCCTCACTATCTGGAT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGGGGTTATGCAC	alt_5486_fdr	14	27	18	21	18	22	22	16	24	18
CGCCGGCGAACTCGCT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GATGTTATTAGTCATA	alt_5486_fdr	22	16	25	18	24	16	26	18	23	16
AGGGAGTGTAGGCTTC	alt_5486_fdr	6	2	4	7	3	1	2	2	6	4
TAGATACTGGACATCC	alt_5486_fdr	26	29	21	25	24	23	30	16	30	15
ATTACCAGGTGACTCT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCGTCCACCAAC	alt_5486_fdr	59	85	98	75	94	64	96	58	95	77
AGGGGAAGTGCATCAT	alt_5486_fdr	7	11	7	4	15	10	16	9	5	8
TCAAAGCTTCTAGGCT	ref_5486_fdr	7	14	14	7	9	12	11	10	6	11
CTGCAATACAGTTCCT	alt_5486_fdr	24	35	29	36	43	24	49	28	49	23
ACATCAGGGACCGCAA	ref_5486_fdr	21	28	42	23	18	27	24	17	21	19
CGGGTTACTGTCGTAT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TTAAACCATATCTCCT	alt_5486_fdr	15	12	15	23	15	6	27	14	17	8
TTTTTACATCGTGAAA	alt_5486_fdr	24	51	37	27	39	28	38	38	35	35
GAGCCGCGAGTCATGT	alt_5486_fdr	17	19	15	14	29	14	20	36	18	15
ACGTGTTGACGTGGGA	alt_5486_fdr	17	22	12	20	14	9	10	16	17	10
ACTTTGCACTGTGTTC	alt_5486_fdr	20	20	29	17	26	29	31	31	33	21
GATTTTTTAGGGATTT	alt_5486_fdr	19	16	18	23	33	24	29	12	22	23
ACAAGCATCTAAATCG	alt_5486_fdr	8	8	8	13	10	8	10	5	11	3
TCGATTAGACTTTCTC	alt_5486_fdr	52	63	51	32	55	42	61	43	66	48
GGGTTAAGCATTCGAC	alt_5486_fdr	16	21	17	16	11	17	20	10	14	17
AGCTTACCCGAAAAGC	alt_5486_fdr	1	7	7	8	10	2	16	4	14	3
ATTAGTATAATTTCCT	alt_5486_fdr	14	13	22	21	15	20	21	15	13	15
CAGGTCTGTCATAGCT	alt_5486_fdr	6	30	4	8	26	4	17	2	37	8
CTTCCCATTTATTGTT	alt_5486_fdr	1	2	0	0	1	1	3	0	0	1
GTTGTCGGACACTCCA	alt_5486_fdr	0	0	1	0	2	0	3	0	6	0
GTCAAATTATGTTACG	alt_5486_fdr	14	24	15	16	15	19	15	13	16	14
GGCTGCCTATGCTTTA	alt_5486_fdr	15	29	20	17	20	16	16	19	22	18
CACAGCCCTTTGCCTA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
AAAATTCATGTGTCAT	alt_5486_fdr	32	22	34	23	31	32	34	17	41	32
TGCTAGTTACCTACGC	alt_5486_fdr	2	7	5	11	10	2	6	5	3	3
CGTATATCGCCGGCTG	alt_5486_fdr	30	31	49	27	48	30	38	25	42	36
ATCCGCGATCCTTAAG	alt_5486_fdr	40	30	41	32	37	34	40	28	38	40
CCGTGTTCGCTTCTTT	alt_5486_fdr	24	41	33	32	37	27	25	33	31	35
TTCTTGCGCTCCATCT	alt_5486_fdr	25	38	40	17	40	30	40	25	40	25
CCAATGGGCAGCATCA	alt_5486_fdr	5	7	15	11	15	14	19	11	9	8
CTTAGCTCAATGAGAT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCCTACCCTGCTG	alt_5486_fdr	6	14	21	11	17	4	9	5	8	12
GCAACTTCCTGATCAA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCACCTTTACCCA	alt_5486_fdr	30	37	36	33	53	24	48	28	58	36
TATGTAGGTTCCTGAC	ref_5486_fdr	199	298	277	230	312	227	328	220	334	200
TTTCCTTATTTTCGGA	alt_5486_fdr	17	17	25	31	26	25	43	12	31	17
CCGTCCCAGACGACGG	alt_5486_fdr	35	38	46	31	38	29	49	28	60	37
ACTCTTTATTCAAAGA	alt_5486_fdr	10	10	5	9	13	2	7	5	9	3
TGAGAAATTGTTGTGG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TATGTGTGGCTACCGC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCGAAATACAATT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCGGGAGGGATGT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCCCATCGTGTGT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCGCACTGGCAG	alt_5486_fdr	26	41	38	39	41	26	33	29	33	28
TCATAAGACTCACCTT	alt_5486_fdr	2	35	6	6	14	5	13	6	21	3
CGAACCCACGGTCACC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCACCTTGGGTTA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCGGGCACATTGA	alt_5486_fdr	48	57	52	53	60	44	78	52	76	42
TCAGAACTTTAGATAG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTGTCGTAGCAAG	alt_5486_fdr	19	26	19	16	11	9	24	18	18	15
CTGTGTTTCACGGTCA	alt_5486_fdr	24	14	17	14	23	17	30	17	33	12
ACATCGACTTACATTT	ref_5486_fdr	9	17	5	6	11	14	10	11	12	11
GATGAGTTACAGCCAA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCGAGGCATTAAC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTGTTCGGTTGCG	ref_5486_fdr	73	75	79	69	101	53	87	57	91	55
AGACTGTTCATTAAGG	alt_5486_fdr	7	17	17	14	22	15	12	18	16	9
CACTAGGGTTGTGTCC	alt_5486_fdr	4	12	18	9	17	13	14	10	16	12
GGCAAGCACCCTTAAA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTATGGCAACGTC	alt_5486_fdr	46	56	55	45	68	51	87	63	64	46
AGAACCTTGTTGTTGC	alt_5486_fdr	43	52	55	53	68	40	60	38	67	44
TTCTGATAACTCGGGG	alt_5486_fdr	50	57	56	61	39	35	55	49	64	40
TTAACCCACGTAATTC	alt_5486_fdr	6	13	12	13	15	14	26	11	10	13
GGGTACACGCGACCTG	alt_5486_fdr	51	50	60	42	62	41	52	40	51	47
ATGTATACAATTTACT	alt_5486_fdr	12	27	34	21	34	18	28	17	26	11
AGTTGGTTCGCGATTC	alt_5486_fdr	12	25	14	15	16	17	22	17	23	20
GATCAGAGGGCACTGT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TGTACTGTTCTTCTTA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TTAACGTGATCCCTCA	alt_5486_fdr	8	6	6	7	7	6	11	8	5	6
GGGTGCCGACTCGCTT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GGGGAAGTAGTAAACG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTATTTGGTATTA	alt_5486_fdr	105	118	113	122	131	123	140	88	143	103
CGTCAGCTCTAACATA	alt_5486_fdr	94	66	83	100	82	83	89	78	59	88
GGTGATGGGATGCGCG	alt_5486_fdr	55	86	53	54	77	49	58	60	70	41
TTCCGTCTTTGTCCCT	alt_5486_fdr	11	13	6	11	11	7	12	10	6	4
GGTGCTGCGCGCCCTC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTGGTGCGTGTTC	alt_5486_fdr	148	200	151	123	167	114	193	130	220	109
GCTGCCGCATTTATTG	alt_5486_fdr	3	4	5	6	5	0	5	2	6	3
CCTACTATCGAAAGGC	alt_5486_fdr	47	68	43	48	70	23	69	37	74	36
CGAGGATTACGGCTTG	alt_5486_fdr	1	0	0	0	3	1	0	2	1	2
TTGCCTGGAACGCACA	alt_5486_fdr	25	34	26	27	27	18	48	16	41	21
CCCCTAATTTAAGCCC	alt_5486_fdr	19	27	29	18	26	21	23	17	34	20
GTCAGTCTTCAACTGC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTCAACGTTCTA	alt_5486_fdr	9	8	15	5	6	6	7	5	8	7
AAGTAGTCAGTGTTAA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTACCCTGTCAGG	alt_5486_fdr	8	11	15	12	13	6	15	12	15	12
TTTTGGGATGCCCGTG	alt_5486_fdr	36	49	39	37	37	35	60	40	55	32
ATTACCTATGTAAGGT	alt_5486_fdr	31	46	55	49	40	38	61	36	43	45
AGCTTCGTACAACCTA	alt_5486_fdr	20	25	23	23	39	30	29	19	34	25
GATAATGAGCGGCATG	alt_5486_fdr	23	26	30	23	25	20	20	28	35	21
TAGTAACGGCGGCTAT	alt_5486_fdr	43	46	46	48	51	43	74	32	47	51
TATCACCGCTTCGACC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGACAATCGTGATGTA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
AATATTAATTGATTTC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGTTAACAATCG	alt_5486_fdr	19	19	18	20	32	17	30	16	38	15
GGGGCAGTAGTAAACG	alt_5486_fdr	98	138	119	117	114	98	124	96	149	101
ATATTTGTTCAAGTTC	alt_5486_fdr	20	39	38	32	30	33	38	20	42	28
AGTCGAAAACACGTAT	alt_5486_fdr	13	30	21	18	23	19	26	20	15	18
TTGAGCACACACTATA	alt_5486_fdr	15	21	18	11	13	16	33	17	22	23
TTATCTATGATTCCTT	alt_5486_fdr	9	7	4	15	4	6	5	6	12	5
CAGCTCGTTATACGTC	alt_5486_fdr	26	83	41	36	63	27	70	26	103	28
CGTGATTATTTGACCA	alt_5486_fdr	5	5	9	7	6	5	9	5	8	4
CTCTCTATCCCACACC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GAAACCGGCTCAATCC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTGTCCGTCTAAC	alt_5486_fdr	52	63	71	47	72	51	64	39	64	40
ACTGGTGCTGTTGCCA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CCGGACGACTCAATCG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GGTGATCTATACTGCA	alt_5486_fdr	25	40	36	25	33	22	35	17	31	24
AGCGAGCACAACTTAC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CATCTGCATTCTTGCC	alt_5486_fdr	18	23	27	23	21	16	25	15	31	26
GACCCTATCTGGGCCG	alt_5486_fdr	4	14	13	11	6	6	12	12	16	12
TACTTCTCGATTCCTG	alt_5486_fdr	3	8	11	9	15	3	16	5	10	5
ACAGATTGGTCCAGAA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATAATTCTACAT	alt_5486_fdr	12	32	19	17	28	13	23	12	22	13
GACCCCCGTGTCCCTG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTATAGCGTACTC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTGTTGGGATATG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGTGAGTGCGGTA	alt_5486_fdr	10	7	12	6	13	9	23	3	19	8
GATCTGATACAAAAGT	alt_5486_fdr	19	26	20	24	23	18	17	19	23	16
TGCTAGCTATCACATG	alt_5486_fdr	7	13	16	4	14	10	9	2	11	9
GTAATCAGGTGCGACT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
CCCGATTGTTAGTGGG	alt_5486_fdr	11	20	11	13	23	12	30	13	38	8
GTGTGTGAATCTACTT	alt_5486_fdr	3	3	8	5	6	4	5	4	6	3
GTGGACTCAGTCCCTG	alt_5486_fdr	42	48	65	33	61	52	50	41	73	33
GCTACCGATCAGCGTG	alt_5486_fdr	16	36	29	12	24	25	25	14	49	12
GGGGTTATATAACTAT	alt_5486_fdr	16	23	16	16	27	12	19	13	23	9
CGCGGCACAAGTCGGA	alt_5486_fdr	15	12	20	8	15	14	16	14	14	6
ATAGGACTACGTTGTT	alt_5486_fdr	5	9	14	14	26	8	8	14	14	10
GACTACCGGTTTGGCG	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GATTGCCGCTCGTCCG	alt_5486_fdr	1	2	1	0	1	1	1	0	1	2
CCAGTCTATTGCTAAT	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTACAGTTATTTACTC	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTTGTGTGTTTTA	alt_5486_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTTCTGTCCCAGA	alt_5486_fdr	19	22	15	19	32	16	21	15	19	18
TTGAGTTGATCCGCTC	alt_5486_fdr	53	60	52	41	41	34	39	37	43	27
GGGTCAATGACTAACT	alt_5486_fdr	58	58	44	51	63	34	89	63	51	35
GCGCCTTCTGTTCCTA	alt_5486_fdr	2	6	0	1	4	0	0	3	12	5
GGGCGGCACCATTCCG	alt_5486_fdr	2	3	4	1	0	3	3	1	6	0
TGCGTAGTTACTTGGT	ref_1617_reverse	8	25	13	11	9	14	7	9	13	10
TACGGCGATCTTCTCG	ref_1617_reverse	0	3	0	7	2	3	3	1	1	0
GAGCGTCAGCCTGTTC	ref_1617_reverse	29	53	48	35	59	35	47	24	57	34
TAACTCGACAGATTAA	ref_1617_reverse	0	1	0	0	0	0	1	0	0	0
TTACTGAGCCAATCGA	ref_1617_reverse	25	28	33	16	24	19	43	20	27	20
CTCAGCCATATCCGGC	ref_1617_reverse	18	15	23	26	18	28	24	12	34	17
TTGCTTAATGATCGGG	ref_1617_reverse	17	22	23	20	20	16	17	25	20	16
TGGCTATGAGTTTGTT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATTAAGGTGCAGTCTA	ref_1617_reverse	12	17	24	19	26	12	22	14	25	10
TAGATAAGTGGCGGTA	ref_1617_reverse	34	28	18	22	24	24	27	15	22	19
TCAGGTAGAGAGTTCT	ref_1617_reverse	0	1	0	0	0	0	0	0	0	0
GGTCTTGGACAACCAA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
ACATTCAGAAAGGCTT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTGAAATCCGGG	ref_1617_reverse	11	10	15	13	13	16	22	6	10	23
CATCGATTTGAATCCC	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCACGATAGCTCTGGG	ref_1617_reverse	40	50	40	48	51	42	57	41	64	35
TTCGCGCTTCTGTCTG	ref_1617_reverse	30	74	48	32	53	29	64	39	64	34
TTGGGCGGCCTTTGTT	ref_1617_reverse	19	28	21	19	34	19	43	21	47	20
ATGTGTGCTACCTTCG	ref_1617_reverse	18	26	27	35	38	27	37	19	28	22
GGTCGGGACCAGGCAT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCAGCCTCCAAAG	ref_1617_reverse	7	26	15	10	36	8	31	17	29	11
ATAAGGGCTTGATGTA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTTTTTTACTCTT	ref_1617_reverse	42	52	60	32	68	36	50	42	61	31
TAGCAATTATGTTTAT	ref_1617_reverse	3	3	4	1	1	6	5	1	5	2
TCATAGGCTATCTCGT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGACCGTTATAGA	ref_1617_reverse	30	21	21	15	30	32	39	26	45	27
CAATTGCTCAAAGCAT	ref_1617_reverse	8	14	9	3	5	5	16	8	16	4
CAGCGTAAGGGTTTAT	ref_1617_reverse	16	15	6	12	11	6	14	17	19	11
TCATCTCGATCATTGC	ref_1617_reverse	22	10	17	8	20	14	18	10	20	11
ATCAACTAATAAATAG	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCGTACAGAAACCTGC	ref_1617_reverse	9	23	17	17	14	14	22	8	19	11
TTCGTGTGATTACGGT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGCATGCTAGCAT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATTGAGGTCGCCTAAC	ref_1617_reverse	21	38	15	12	23	26	31	21	28	13
GAAGCATCTCGGGACT	ref_1617_reverse	17	37	29	22	31	25	30	24	30	24
ACTTATAACTCTATGC	ref_1617_reverse	0	4	2	0	2	4	1	3	7	4
GTTTCGAAAATCTCAG	ref_1617_reverse	9	10	13	16	33	18	20	12	20	14
TCCATCTCTTCTCACT	ref_1617_reverse	22	34	25	27	32	23	31	22	44	16
CCTGGTTGTGCCCTTA	ref_1617_reverse	16	16	13	15	13	15	17	15	20	22
TGAAGACAAGTGAGTT	ref_1617_reverse	111	142	140	107	130	127	142	118	126	109
TCTGGATTTTCTGAAT	ref_1617_reverse	2	7	10	5	4	7	10	7	11	3
CAGAAGCTCGGATTCC	ref_1617_reverse	5	17	8	6	12	7	14	8	15	5
TCTTAACTAGCAAGCA	ref_1617_reverse	4	9	4	10	5	5	6	5	4	4
ACCTTTGAGGAACCGT	ref_1617_reverse	35	50	45	40	52	32	48	35	51	34
TTTTAATCCCAGACTT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGATCCCACACTT	ref_1617_reverse	50	59	67	49	58	42	62	50	55	31
AACCGCCGGCATTGAC	alt_1617_reverse	14	19	22	27	23	23	17	21	28	16
CAGTTTTCGGGTAGGG	ref_1617_reverse	17	28	33	26	23	12	44	21	28	6
CATTTGGGCACAGGCT	ref_1617_reverse	60	76	96	62	93	67	95	53	90	67
GTAAGCAACAACGTAC	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GAGCATTCAGTTTTGG	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCTTGTCCCGCGA	ref_1617_reverse	5	7	8	3	13	1	8	1	6	1
CGAACGCAGGCTTGGT	ref_1617_reverse	11	14	21	14	17	9	13	7	18	10
ACATACTGCGGGAACC	ref_1617_reverse	14	22	17	14	28	8	29	9	19	11
TTACGACTTATTCTAA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TATATAGAAGAGTATC	ref_1617_reverse	73	92	86	64	69	59	95	49	98	66
TCTGCCGAAGTCCGTC	ref_1617_reverse	10	11	14	10	17	11	12	6	18	9
TCATCTTTCCCCAGTT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
AATTTTTAGGAGTCAG	ref_1617_reverse	28	29	31	28	32	15	27	13	36	29
TGAACATAGAAAGAAG	ref_1617_reverse	1	0	0	2	0	0	0	0	0	0
GGCCTCTCCCAGGTTT	ref_1617_reverse	9	24	22	15	15	11	22	15	10	14
CAAGTCATTGGCTCAG	ref_1617_reverse	66	64	47	65	73	71	82	42	87	44
ATTTTGGCGCCCACGC	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGAGGATGGGTTC	ref_1617_reverse	1	4	1	1	6	5	11	1	2	4
GCACTTATACCACGAG	ref_1617_reverse	38	49	59	29	44	51	49	26	60	34
TGTGTGGTGTCTGGTT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCCTCCTTGCGGG	ref_1617_reverse	10	7	12	12	9	11	14	15	11	7
TTAGGGACGTTTTGGT	ref_1617_reverse	25	45	31	37	30	20	44	22	36	21
AGCTTATATGTGTTGT	ref_1617_reverse	30	47	43	30	37	26	51	30	31	34
TCCTGCGGTAAGGACA	ref_1617_reverse	2	9	8	12	10	3	8	2	11	6
AGTTTTTTAGATTGTT	ref_1617_reverse	13	11	6	9	16	13	27	10	19	14
GATCCCGTAGGCGCCC	ref_1617_reverse	118	149	201	157	157	142	162	121	193	147
TCATTCAGAAAGGCTT	ref_1617_reverse	102	135	132	112	140	109	144	100	128	91
GGTTCCCCAGTCGGCT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GATTTGCTGGTATGCG	ref_1617_reverse	24	27	33	30	33	19	24	21	33	14
TCTCTCAGGCATGGCA	alt_1617_reverse	41	43	41	26	48	45	57	46	50	41
TTGCCTGTTGGGCAGC	alt_1617_reverse	127	168	147	147	165	136	200	116	169	118
CCGGATTGGTCGGAAA	ref_1617_reverse	0	4	10	7	8	8	7	9	17	10
GTGTGTGACGTTTCAA	ref_1617_reverse	1	7	6	4	9	6	13	7	4	5
GGTTTTTTTTTTGTGT	ref_1617_reverse	0	0	0	0	0	0	0	0	1	1
TCCAAACGATTCAGTC	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CACCTTCGTTTACTCG	ref_1617_reverse	0	0	0	0	1	1	1	2	1	0
TATCCTGGACTGTCGT	alt_1617_reverse	10	10	14	15	13	11	14	13	14	10
TGCTTTCTTACGTTCC	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TAAATTAATTTTCTAG	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GTTCACCGGTCCATAT	ref_1617_reverse	5	23	2	4	20	4	18	3	24	2
AGAAGACAAGTGAGTT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCAACAGTTCATT	ref_1617_reverse	4	6	13	4	7	4	10	2	9	2
AATAGAATGCATCAGT	ref_1617_reverse	27	36	31	32	34	32	38	25	41	25
TGGACCCACGCTAATG	ref_1617_reverse	54	50	46	56	60	58	41	48	64	45
ACTTGTCGCTACTATC	ref_1617_reverse	6	9	7	9	5	4	15	8	12	5
GTATTTAAGCTTGACT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GTATAGGGTGATTCAT	ref_1617_reverse	30	38	38	24	45	36	51	26	56	31
TATGCCTTTAGTTCTA	ref_1617_reverse	8	6	12	9	20	5	14	5	10	8
ATTTAAGGCCGGGTCT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCTTAATGTATCT	ref_1617_reverse	55	65	81	60	75	47	88	48	54	59
ATTATCCCGGGTAGCG	ref_1617_reverse	35	50	36	41	43	26	53	27	37	32
CGCAGCGCCTGATCCA	ref_1617_reverse	46	47	36	42	35	40	35	44	40	38
CATCACAGAGGTGTGA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATACCAGTCTCTTGGT	ref_1617_reverse	45	72	51	33	55	46	49	28	65	43
ACTGGTTAGTTAGCAG	ref_1617_reverse	26	29	11	19	18	21	27	15	19	20
AAATGGTAGCCGTTCC	ref_1617_reverse	87	91	116	86	95	82	85	71	103	85
ACTTTTTTAACAAATG	ref_1617_reverse	20	16	26	24	18	23	22	19	19	12
TCCGGCCCTCCTCAAG	ref_1617_reverse	8	15	11	7	14	10	18	16	18	9
TTTTTGAAGAGATATT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTTTCCGGCTCT	ref_1617_reverse	12	26	33	23	33	26	25	24	20	24
TCCCGCCGCACCTCCA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CACTCCAGCGGTAGGT	ref_1617_reverse	32	45	25	33	50	24	54	17	62	25
CTTGCTGCAAAGCAGA	alt_1617_reverse	36	45	48	34	50	31	55	31	53	33
ATCGTTCGGTATTTGT	alt_1617_reverse	3	5	4	5	0	5	8	4	10	9
CTCATCAGGATGGATT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCCGTCTCTGTTC	ref_1617_reverse	20	19	22	26	28	27	32	22	35	21
GTGAGAACCAAAGTGT	ref_1617_reverse	55	78	80	78	89	54	102	58	110	62
TCTAATGGGAGCATTA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCAATTACTCCTT	ref_1617_reverse	20	24	25	18	17	25	31	20	26	14
GCGTATTCTCACTTGC	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAATCATGCCTAG	ref_1617_reverse	119	140	113	94	151	103	146	105	153	105
ACTAACGGTTACTTTT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCGACCCAGGCAT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TATCATGTGTATGTCA	ref_1617_reverse	7	25	16	18	25	9	19	19	19	5
GTACCCACCTGTTGGA	ref_1617_reverse	0	4	2	5	7	0	5	3	10	5
AGTTTGTTTCACCTAT	ref_1617_reverse	14	8	10	9	9	11	20	13	12	7
TTGTCTTTAGCTGGCT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCCTAATTTTAGG	ref_1617_reverse	37	43	59	47	56	61	47	53	46	49
TCAAGGGACCTCTTGG	ref_1617_reverse	66	60	67	66	58	52	75	39	76	34
TTCTTATATCCAGAGG	ref_1617_reverse	85	94	119	75	116	74	132	81	94	74
AAGTAGCGCATGGCGG	ref_1617_reverse	9	6	9	8	7	9	10	13	11	5
ATTACCAGTACCGAAG	ref_1617_reverse	22	38	31	26	43	24	38	28	32	27
TGGCACATAGGCTGAC	ref_1617_reverse	8	8	16	9	11	7	9	4	16	12
AAGCCCGGCGCGTCTT	ref_1617_reverse	93	135	115	108	166	77	161	98	142	76
AGAGCCGGCATCGTTC	ref_1617_reverse	12	12	4	1	9	5	8	4	10	3
ACACCTTGCGAAATTC	ref_1617_reverse	22	34	34	35	27	25	32	29	40	18
GTAATCTTACATACTC	ref_1617_reverse	0	1	1	3	4	2	4	3	3	5
GGAAAGTTTCTTCTTA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCACTTAGGAAAA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTATGTGGTGTTG	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGAATATATTGTC	ref_1617_reverse	28	43	37	28	36	23	33	23	37	24
GGCGCGCGTTACTTGT	ref_1617_reverse	50	57	69	56	63	40	66	45	74	47
GGCCGGAAGAAGGTCT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGAGAACACGCTT	ref_1617_reverse	15	13	27	23	25	18	20	25	23	11
ACATCCAACACATTCG	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
AATTTGCGCTGTAGAA	ref_1617_reverse	5	10	8	7	11	9	9	8	14	9
GTAAGGTTGTCACCTC	ref_1617_reverse	17	27	17	23	26	18	24	10	11	17
TGTGTTTATCGACTTG	ref_1617_reverse	11	26	12	17	19	19	20	13	32	6
TGTTTTCCTTTGCAGT	ref_1617_reverse	3	8	4	11	6	7	3	6	7	2
TCTTGGAATAACACGC	ref_1617_reverse	9	6	0	6	10	10	7	5	11	7
AGTGTACGGAAACCGT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCGACGCTGTCCT	ref_1617_reverse	6	9	7	9	9	15	7	12	13	5
GGTTTTTTTTTGTGTG	ref_1617_reverse	19	25	27	17	26	16	35	22	23	16
TGTATTTAATTCGCAC	ref_1617_reverse	9	16	14	13	19	11	16	6	23	8
TCCAAATTATCTTATT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GAGATGAATTTGGCGT	ref_1617_reverse	53	56	52	40	46	51	66	45	60	42
AAGTGTTACACGCAGT	alt_1617_reverse	82	87	73	74	93	67	115	72	95	78
GAAGACTCGTCGTAGG	ref_1617_reverse	41	57	40	51	63	46	58	37	56	28
TTCTCTGTCAACAGCT	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTGTCGTAACAAG	ref_1617_reverse	32	21	29	22	33	20	30	24	31	14
ATGGCTATTCATCGCG	ref_1617_reverse	0	0	0	2	0	3	0	1	2	2
GGACTCGTCACTCTAA	ref_1617_reverse	5	4	4	7	4	5	10	5	3	3
TTAGGCTACGGCGTGC	ref_1617_reverse	2	1	9	0	2	2	5	2	4	3
CATTAATCTCCGGCAG	ref_1617_reverse	1	2	1	2	3	1	2	2	3	3
TCTGCACGCGGATCTC	ref_1617_reverse	28	27	33	17	26	24	25	26	27	22
ATCCTGCTGACATGAA	ref_1617_reverse	15	7	12	6	9	5	10	11	15	3
GAGCCGTCGTATGGGG	ref_1617_reverse	12	13	16	12	23	10	24	13	11	9
GAATTTCGTATAGGAA	ref_1617_reverse	29	24	19	23	21	23	32	22	33	22
ATGTTCAACCGCTCGT	ref_1617_reverse	0	2	4	2	1	0	3	3	2	5
TTAGTGTATAGATTGG	ref_1617_reverse	33	43	45	28	37	36	47	39	48	32
GTCGTGCCCCAGCTTA	ref_1617_reverse	0	0	0	0	0	0	0	0	0	0
CACACCCCGGTCAGCG	ref_1617_reverse	2	3	1	1	3	0	2	1	4	2
TCTGATCCGTACTCAA	ref_1617_reverse	33	47	59	42	45	42	53	42	42	45
TTAAGAGGCGGCTTCT	ref_1617_reverse	19	24	20	17	21	21	39	19	30	16
TCAGGTGTATGTGGTT	ref_1617_reverse	13	14	15	9	25	9	17	22	20	16
TACGGCAGTTTGCCAC	ref_1617_reverse	5	9	5	8	12	4	1	1	4	1
CACCTCCATATCTGGA	ref_1617_reverse	30	36	53	44	53	40	52	38	50	34
TTAATAACTTATGATT	ref_1617_reverse	31	25	39	21	38	13	28	25	30	27
AAGGTTCGAGTGCGCG	ref_1617_reverse	89	105	102	108	105	90	114	85	124	98
TTATACGGTAGATTTG	alt_3388_reverse	111	59	106	124	54	110	65	104	48	92
TCTGCTCCCGTGTTCA	alt_3388_reverse	97	56	119	101	57	102	58	89	54	71
GGTAACTATGGGTACG	alt_3388_reverse	628	289	748	664	317	594	278	559	316	523
CTGCGCACCGCGATGA	alt_3388_reverse	12	6	10	6	5	3	11	5	9	7
TGCCTGCCGCCAGTCC	alt_3388_reverse	7	7	8	8	8	4	3	3	5	4
CTGTCTATTGGATTGT	alt_3388_reverse	33	39	60	45	42	41	28	36	42	30
ATAACATGAAACGCCG	alt_3388_reverse	78	31	104	71	40	76	17	71	35	65
TTCTCGGGCCTGGGTT	alt_3388_reverse	74	44	87	75	31	60	33	71	42	73
CAAACTTCGATCCCGC	alt_3388_reverse	17	6	14	17	5	10	3	9	3	10
GACCTTTGTCTGATTG	alt_3388_reverse	3	0	0	2	1	0	1	0	0	1
CTAGCTATTTGCTCAG	alt_3388_reverse	116	88	142	121	94	139	72	119	75	115
TACTGGCTCACCCGTT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CAAGCTCTGACGCTTT	alt_3388_reverse	14	14	24	16	8	11	12	18	12	11
TCGCTGCGTACGTCCC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTGGGCTCTGCC	alt_3388_reverse	26	10	36	27	17	26	18	23	6	23
CCATATAGAAAGGATT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCACGTCAGCTTC	alt_3388_reverse	0	0	4	2	1	2	2	2	1	4
GATTGAGATCTTCCCG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
AGCGATCGGTCATAGG	alt_3388_reverse	5	0	3	5	1	9	2	2	3	5
GTTTGTTCTTTGGGCG	alt_3388_reverse	226	135	311	274	189	261	157	257	178	221
TTTGGTATTCTCAGGC	alt_3388_reverse	35	14	41	33	15	38	18	22	15	25
CCAGTCCACTGACTAA	alt_3388_reverse	139	73	151	131	77	140	67	118	63	100
TTTTAGGTGGGGCAGC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGTGATTATTTAG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTGGCTTTCATTT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TCAATATCGTTCTTGG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TATACGCAATACGGAG	alt_3388_reverse	56	39	96	81	43	84	34	65	34	70
TTCGATGAGTATTTAG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGTATTTGTAACC	alt_3388_reverse	143	73	170	143	75	135	91	148	100	135
CGCAGGTTCTAGCTGT	alt_3388_reverse	43	14	33	32	21	37	22	21	19	20
ACTGCTCTAGTCCACA	alt_3388_reverse	1	3	1	2	4	5	6	2	1	3
TGCGGGTAGTCCTTAG	alt_3388_reverse	73	29	87	99	51	63	43	53	44	66
CACAGTAAATTGTCCG	alt_3388_reverse	2	1	1	0	1	0	0	0	2	1
GCAAGTAAGAAGTCAG	alt_3388_reverse	5	6	15	7	6	9	3	7	6	7
CAGATTTTGGGCGTCG	ref_3388_reverse	375	253	491	404	240	345	256	373	265	395
TGGGTTGTTCTCATGG	alt_3388_reverse	20	7	16	17	9	21	11	13	5	26
TTCGACGCTATTGCTG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGAAGAGTTCTCG	alt_3388_reverse	15	13	26	22	12	21	11	12	24	16
TATCTCAGTCACTCAG	alt_3388_reverse	52	33	59	64	38	41	41	62	54	39
TCTTGGTGAGCTTGTC	alt_3388_reverse	66	47	84	55	35	61	43	53	36	65
TACGCACGGGATTAAA	alt_3388_reverse	20	2	20	13	6	19	10	17	11	15
GTCCTGGGGTTATGAC	alt_3388_reverse	108	49	93	110	82	95	64	109	46	95
CTTCTGTTTTGACCCT	alt_3388_reverse	49	25	47	42	16	40	21	46	16	33
GGCCATTTTGAGTCTT	alt_3388_reverse	121	70	177	137	87	134	87	116	78	144
CAATAGAGGGGGATCC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCCAAATGTTTTCATC	alt_3388_reverse	26	8	26	26	14	23	17	17	23	22
GGTAAGGAGACTTCCG	alt_3388_reverse	13	5	11	8	4	10	5	8	2	11
TTTTACTTCTACAAGC	alt_3388_reverse	41	16	40	31	16	37	26	21	18	34
GATACTGTTGCTTATT	alt_3388_reverse	59	45	77	65	48	70	45	68	57	66
AGGCGCTCGGCTACCC	alt_3388_reverse	10	4	11	3	3	5	6	8	3	5
GTTTCGGTCTAATTGT	alt_3388_reverse	353	177	414	329	152	316	207	287	188	299
CAGTGTCTAGCCCGTC	alt_3388_reverse	11	5	18	10	14	11	7	11	4	5
GTTGGAACGGTGCTAT	alt_3388_reverse	50	10	51	35	15	47	19	46	26	38
GGTCATTGCCTAACCT	alt_3388_reverse	33	25	49	40	21	33	27	30	23	30
CGACAGTTTGGTGTAG	alt_3388_reverse	64	65	75	63	51	68	51	75	46	64
ATCAGCTTTCTTCGGG	alt_3388_reverse	100	88	143	115	99	76	90	102	95	79
TTTGTGACGTTTTACA	alt_3388_reverse	23	14	19	29	33	28	28	28	22	30
TTGCCTTCTCAAAGCG	ref_3388_reverse	27	21	37	33	12	26	23	33	21	25
TATATTGTGTCCCGGC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCCCGTGATTGAA	alt_3388_reverse	2	2	3	4	3	2	4	3	1	6
CTCTTGGCCCCGGTAG	alt_3388_reverse	2	1	10	7	2	5	3	8	0	6
TATCCGGCTATGAGTG	alt_3388_reverse	8	5	7	5	2	6	4	5	2	3
GCCCCTTCTTGCAATT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCATATTGTCGC	alt_3388_reverse	0	1	3	0	1	2	2	0	2	2
CCATTTAATCCCAGCA	alt_3388_reverse	38	30	35	45	48	22	29	18	52	17
GGTGGTTGTTAGTTGC	alt_3388_reverse	4	1	6	2	0	4	2	3	0	2
ATCACAAATTTGCCTT	alt_3388_reverse	2	2	0	5	0	10	0	4	2	2
GTTTCTCCGCCACGTT	alt_3388_reverse	143	89	215	149	97	116	88	126	81	134
TAACGGTTAGGTACAC	alt_3388_reverse	5	3	9	11	8	11	1	11	11	19
ATGATCGCATGGTACT	alt_3388_reverse	20	14	20	17	5	10	9	16	3	14
ACCACATCAATAGGCT	alt_3388_reverse	5	6	11	4	3	5	3	10	7	4
TCAAGTTCTCGCTCAG	alt_3388_reverse	108	70	146	119	58	109	65	86	65	108
GTCTTCCTATTTGCGT	alt_3388_reverse	112	63	153	125	81	123	65	106	72	119
GTCTAATCCCTTTTAC	alt_3388_reverse	85	67	89	80	65	76	61	93	79	67
CCCAGTAACTGGTTAA	alt_3388_reverse	100	63	158	97	78	90	95	116	85	83
GGCTTAGACCCGCCGA	alt_3388_reverse	89	45	89	63	64	87	57	66	65	63
ATCTTCGAATCTATGG	alt_3388_reverse	76	49	93	71	54	81	63	73	46	68
AGTGAACAGGACGCCT	alt_3388_reverse	20	14	35	26	13	21	13	23	14	18
TTATTGTTGTCGCAAC	alt_3388_reverse	59	39	83	58	43	54	30	47	29	46
GAGATAGCTCGGTGCC	alt_3388_reverse	70	19	87	68	27	63	40	65	36	50
CGAACTTGCAATCCCT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGGCACGGCCCGA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTTAGGACAACGC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCGTATAATTTATTTT	alt_3388_reverse	23	8	32	22	9	31	10	23	9	28
GCGTCGCGTGCTTTGG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TCAGAACTGGTTTGGC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TGAATGACGCGGCATC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGTTCGAGCCCGG	alt_3388_reverse	186	95	166	156	86	146	118	150	94	137
CTGTAAGTGTTCAAGC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTGACCAAGATGG	alt_3388_reverse	9	11	13	8	5	17	6	17	7	5
ACGTACGGCAGGGCCT	alt_3388_reverse	78	30	88	65	35	60	41	51	36	67
TTCACTCATCTATCAT	alt_3388_reverse	58	19	64	58	23	66	43	56	27	39
TTGCGTCTGGGAGAAT	ref_3388_reverse	10	7	10	11	5	13	8	5	9	13
CGGCCTGTCCAATAAG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GAAATCTATAATCAGC	alt_3388_reverse	28	15	22	16	12	24	11	21	8	26
TGGGCCCAGCAGGTAA	alt_3388_reverse	3	3	9	6	2	3	6	4	4	8
CTGGGTCGGCATTAAT	alt_3388_reverse	46	37	75	67	21	50	27	51	38	48
GTGTAATGGTTCCCAG	alt_3388_reverse	57	45	76	62	34	59	47	64	45	53
TCTATGGAGCCATTTA	alt_3388_reverse	93	64	88	88	66	62	69	84	51	71
TATACGATTTCTCATA	alt_3388_reverse	27	11	20	18	15	15	11	22	14	15
ATATTCATCTTTGAGT	alt_3388_reverse	30	9	34	36	19	37	17	38	19	17
CTTCCGTCGCCTTCTG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTGAACCCTCGCGTGG	alt_3388_reverse	73	40	80	63	44	85	34	66	44	71
GAGGGGTTAGCGCCTG	alt_3388_reverse	28	26	42	35	20	28	19	35	13	32
GGACTTTGAAACTTGA	ref_3388_reverse	353	183	409	354	240	326	224	337	222	335
GGCACGGCGACTTGCA	alt_3388_reverse	90	48	127	112	36	91	53	83	48	95
TGCTCTACGATATGTC	alt_3388_reverse	20	12	19	16	18	12	11	16	11	23
GTTATATACCCAGGTG	alt_3388_reverse	152	90	190	159	100	150	104	155	86	140
CTCCTCCTTGGTCAGG	alt_3388_reverse	18	11	13	24	13	14	9	16	5	13
CCCGGGAAAACCATCC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TAATGGAGGTCGCCGA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TATTTGGTGCGTAACG	alt_3388_reverse	58	32	97	49	39	66	55	62	28	57
AGCATAATTCTATATT	alt_3388_reverse	33	14	49	31	12	29	12	23	9	28
ATTTGATCATGCATTT	alt_3388_reverse	31	36	76	40	25	36	24	44	38	37
CTGACTAGCACGTTCC	alt_3388_reverse	31	28	36	40	29	21	43	29	36	20
TGACCTCATGTTTTTA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTCCAGACTTCTATAT	alt_3388_reverse	2	0	3	2	2	2	1	3	0	1
GTTAATTTTAATAGTT	alt_3388_reverse	1	1	3	5	1	8	4	2	3	7
AGAGTTTCGCGTGCAC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
ACTCACAGGCTTACCT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTCATTCTTTTGGCTT	alt_3388_reverse	23	12	32	27	13	19	12	25	16	23
TATCTGACGTTCGCAA	alt_3388_reverse	56	39	66	43	17	34	28	36	37	39
ACCTTGGCCCGGAAAG	alt_3388_reverse	7	1	3	0	0	4	2	5	2	2
TCTATTTGCGGATTCC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCGGGTTCGCACCGCC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTGGTTACAGGTC	alt_3388_reverse	14	10	20	10	2	13	14	12	15	17
TGTATAGCTGCTCTTG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCATAGGTATGTTTAA	alt_3388_reverse	1	1	5	3	1	3	2	1	1	3
TACTGATGAAGCCTGC	alt_3388_reverse	181	94	223	170	74	161	74	172	91	162
CAGTAATGTTTTCCCT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCAGTCTAGTTAC	ref_3388_reverse	159	84	203	180	100	160	100	152	107	130
ATTCCGCCGACCCGCA	alt_3388_reverse	52	32	61	66	33	61	28	48	46	54
TTGGGTCGAACTGCAA	alt_3388_reverse	27	49	38	24	67	31	59	29	72	24
AGGCCGTCCTGATTGG	alt_3388_reverse	3	4	3	2	0	3	0	2	1	1
GGACTTGTACGTCAAG	alt_3388_reverse	168	102	205	181	103	184	126	188	116	148
GCCACGAATGTGTCGT	alt_3388_reverse	103	52	159	111	74	121	68	108	73	94
CGGTTTGCTATACCGT	ref_3388_reverse	182	100	214	169	72	167	110	158	93	152
GGTTCTGAGCGGATCC	alt_3388_reverse	68	33	80	80	25	74	50	80	35	56
GGGTTGAGGATGATCT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCATGGTTATTTC	ref_3388_reverse	374	184	450	381	193	344	165	340	225	308
TGGGTCAAGCATTGGC	alt_3388_reverse	130	65	162	130	56	99	70	120	73	128
GTGGTGGTATTTCTAT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
AGCAATGGGCTGCACT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGATTTCGGTAGT	alt_3388_reverse	33	19	33	30	28	32	18	33	18	27
AGGACTCTTGATATTG	alt_3388_reverse	99	44	117	102	57	99	61	103	46	84
TTTTCCTTCAGTTTTG	alt_3388_reverse	364	177	446	407	209	361	202	352	194	326
TCTGGCTGGTCCACGC	alt_3388_reverse	12	13	20	11	12	13	5	6	3	10
TTTTTTTTCATAATCT	alt_3388_reverse	17	43	12	22	32	22	34	18	23	27
TTTCGCTCGACCGGTA	alt_3388_reverse	43	46	40	57	40	27	40	48	25	30
CCGGGCACTTGTGGGC	ref_3388_reverse	2	6	3	2	1	1	0	3	3	1
AGAGACCGTACGAGGC	alt_3388_reverse	115	44	153	112	67	121	50	123	70	125
GCCGTTTATTTTTTGG	alt_3388_reverse	79	45	101	83	40	75	37	86	45	62
CTTAAAGGCAACGTCG	alt_3388_reverse	49	29	69	80	26	43	25	45	23	56
TCATAGAAAAGAGGCC	alt_3388_reverse	152	60	172	121	75	147	80	141	76	144
GTCGCTTGGCTAGTAG	alt_3388_reverse	16	2	8	13	9	18	9	13	13	12
TATCGATATAAACTTT	alt_3388_reverse	87	45	112	81	47	83	61	77	40	77
ACAGCGCTCCGTGCGA	alt_3388_reverse	67	44	85	61	25	56	50	76	39	55
CAGGTCTAGACACATA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CTGCAGGTCGTAGAGC	ref_3388_reverse	93	65	118	107	74	96	86	93	72	97
CATTATGTAATGCGCT	alt_3388_reverse	31	19	45	35	19	55	19	39	11	33
AAATCAAGTGATCGAA	alt_3388_reverse	32	18	35	27	18	29	19	32	13	20
GCTTAGTAGGATATAT	alt_3388_reverse	14	8	16	17	18	25	14	27	13	11
ATCCTCTCATCGCGTT	alt_3388_reverse	8	6	11	15	8	13	9	8	5	9
TAAGTACATGATTGAT	alt_3388_reverse	126	66	171	146	84	131	72	149	78	127
CTAGGTATTTGTCAGT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTCTTTGTCGTTC	alt_3388_reverse	92	42	109	83	57	87	35	78	57	78
ATCATATGCCACCGGG	ref_3388_reverse	109	44	125	104	76	96	66	99	54	106
TTCGCGGGGTTATTCA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TGATAAATAAATCGCC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCCGTATGGTCTA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
ACTAAATAGTGATATT	alt_3388_reverse	16	7	7	15	9	14	10	22	9	14
ATGTCCTAGCGGTAAA	alt_3388_reverse	88	43	101	93	60	69	55	79	55	79
TGAGTTACGCATCTGT	alt_3388_reverse	74	47	93	69	43	67	44	71	55	66
CCCACTTTGAGCCCAT	alt_3388_reverse	86	38	115	105	35	108	36	69	54	89
TTGTTTGGCGTTAACG	alt_3388_reverse	35	9	35	26	14	18	18	38	15	25
TATTAGGTGCGTAACG	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CAATAGAGGGGGGATC	alt_3388_reverse	214	89	246	210	109	162	145	219	117	159
ACCTGGGACCGGGCCT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TAGGAGTTGCGACGAC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTTTATACTATATTAC	alt_3388_reverse	23	9	28	21	13	22	10	21	8	27
CTTCTCGGAGCAACGA	alt_3388_reverse	25	21	48	45	21	28	18	34	24	27
TTTCAAGTTGGACCAC	alt_3388_reverse	20	14	38	25	13	21	18	21	18	19
GGAGACACGTCAGCTA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TGTACTGGCTTTAGGT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
AGTACCAGAAAACTGA	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
AAACCGCCGAAAGAGC	alt_3388_reverse	8	9	13	13	7	14	4	15	7	15
CCAGTCCCCATTGCGC	alt_3388_reverse	51	26	55	47	39	62	45	63	29	50
CTTGTCAATACTCTCT	alt_3388_reverse	6	0	0	4	1	1	2	2	1	0
TGGTGCGTGTGAGAAC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
TACACGCGCCGGTACG	alt_3388_reverse	37	32	71	70	44	42	37	62	26	62
TTTCCCGTTGTTAAGC	alt_3388_reverse	74	46	93	77	36	70	49	77	37	74
TACTTACTGCTATGAC	alt_3388_reverse	62	52	74	90	68	70	56	81	89	52
CGAAACAAGGTGTTCT	alt_3388_reverse	37	26	48	40	30	43	18	39	29	37
GTTTAGTGCGCTCTTT	alt_3388_reverse	72	47	102	79	37	64	47	80	48	63
GCGCTGCGGTCTCAAT	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
CGGATTTTCCTTCCCT	alt_3388_reverse	120	64	162	133	60	136	52	109	64	114
GCATTAGTTAAGTAGC	alt_3388_reverse	5	7	10	8	8	12	12	10	9	8
CCCAAATTTCGCGGTC	alt_3388_reverse	0	0	0	0	0	0	0	0	0	0
GAATAATAAAGTAGAC	alt_3388_reverse	18	12	30	30	10	35	23	20	16	18
GGCTCCTAGCTTTCAG	alt_3388_reverse	78	33	81	65	38	59	47	73	41	50
TTAGCTCGTTTTTCGC	alt_3388_reverse	18	11	36	25	10	34	21	21	26	24
ATGTTGGATTGCTGGT	alt_3388_reverse	58	40	87	78	45	82	44	63	32	75
GCGCATGATCATGTGG	ref_3943_RC	70	97	92	65	96	54	108	54	95	45
CTCCGACGCCAGTGCG	ref_3943_RC	0	8	3	1	6	1	6	0	9	0
CCCGCTCGCTTTGTCC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TATAGATGGCTCTTCC	ref_3943_RC	45	105	84	61	69	69	87	37	104	36
TCCCATAAGCTGGCGC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CAGTGGCCTTCTTTCG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
ACTTAGCCTGATTTGC	ref_3943_RC	26	55	32	41	51	30	50	33	63	37
TGACTTTGAGTTTGTC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
AACGGCAAGCTAGATA	ref_3943_RC	39	48	35	24	43	21	51	23	65	26
TGGGTAAAGCCCGTTT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
GCCCCCACGGTCTGGT	ref_3943_RC	18	11	7	8	20	10	15	9	19	13
AACTCATTTCTGCCCA	ref_3943_RC	11	20	14	14	24	15	26	9	27	14
TGCTGATATCGTTTTT	ref_3943_RC	7	2	1	2	3	2	9	3	9	3
AGTTGGACATCCAACG	ref_3943_RC	6	12	5	10	16	5	7	2	5	3
TTAGCAGACGGGCATT	ref_3943_RC	25	43	33	20	39	24	45	18	42	22
GCGTACAGATATCACT	ref_3943_RC	13	27	31	6	29	16	11	6	21	17
CTTCCGGACTACTATG	ref_3943_RC	11	42	8	19	43	18	38	9	55	14
TGACTCTTACGCGCTG	ref_3943_RC	7	25	17	11	30	23	37	10	23	15
GACGGCATATGATTTG	ref_3943_RC	20	23	33	19	36	14	28	19	32	13
GGACGCCACTCATTAA	ref_3943_RC	10	22	12	15	32	17	16	17	19	10
GGCCTGACCGCATTGT	ref_3943_RC	10	32	10	14	19	16	36	11	29	8
AACACTGATGGGGTCG	ref_3943_RC	42	47	40	33	51	33	60	32	63	24
TCTTGTCGTGGTAAAC	ref_3943_RC	8	9	2	2	9	4	5	2	10	2
GATTGCTCTACGTGTC	ref_3943_RC	1	4	3	4	5	0	1	1	8	5
GAGTATTTGGAAGTAG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CCCTCTTGCCAGCTGT	ref_3943_RC	0	0	0	1	2	0	1	0	1	0
TTCCTCCCAGGCCACC	ref_3943_RC	65	81	58	48	61	44	53	37	68	47
GGCCCGTCTTAAATAT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
ACAACGGTTCTAGAAG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTGGCTCCTGCGTGGC	ref_3943_RC	2	3	4	4	3	1	0	4	1	0
CGTGCAAGGCAGATTT	alt_3943_RC	61	56	66	63	57	58	65	60	61	62
TCCCTGTATGCAACTT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CTTATTTTACGGCGAT	ref_3943_RC	18	26	19	20	36	14	31	12	23	10
ATGCCTTCCGGAGTTC	ref_3943_RC	96	113	125	94	145	71	148	76	161	63
TACTCGTTCTTTTCCG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTTGGAATAGGTCATC	ref_3943_RC	5	16	12	10	8	6	9	2	12	0
CGCCCTTCTCGAAATC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTCTGAGGGATTCTGC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TAGTTCCGTGGGTGGT	ref_3943_RC	8	17	13	16	16	18	16	15	19	13
CGTGCGCATATGGGCA	ref_3943_RC	13	27	15	15	25	15	19	12	20	11
TAGTTCCGATCTTGTG	ref_3943_RC	6	12	6	4	4	6	15	3	18	5
CGGAATAACGCGTCGT	ref_3943_RC	61	91	109	79	92	84	104	79	120	65
CTGACCGCCTACCCGC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TTGCTACGTCTCAAGT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
GACGTGTGTCTTTTAT	ref_3943_RC	12	13	7	9	20	8	21	9	11	7
TAGCCCTGTAGATCAA	ref_3943_RC	28	63	35	33	48	31	61	32	87	27
GGGACGGTAATTGGTC	ref_3943_RC	17	18	22	9	24	12	19	8	13	8
AATCATTCCACTGACC	ref_3943_RC	6	4	3	2	5	1	5	5	11	3
ATGTCTTCGGTTGTTT	ref_3943_RC	8	17	10	11	21	9	20	10	34	11
CCTCAGTGAAGCTCCC	ref_3943_RC	1	0	0	0	0	0	0	1	0	0
CGATTGTTGACTACTC	ref_3943_RC	10	25	10	8	28	19	12	8	27	12
TAAATGTGTGCAGCTG	ref_3943_RC	9	6	10	4	10	8	12	6	9	5
CGCTATTTACTTAAAT	ref_3943_RC	29	65	42	42	59	33	61	44	65	31
TAGATCTCTCTCTCTT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TCATGCTCCATATAGG	ref_3943_RC	13	30	23	17	27	12	43	25	42	17
GCGTGGCTATACCGGG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TTTCAAAACAATGCCC	ref_3943_RC	11	23	28	22	16	25	25	10	21	24
GGGTAACTGCGGAGTG	ref_3943_RC	15	28	21	19	34	18	33	14	27	17
TGTCTCGGCCTGAACT	ref_3943_RC	13	30	23	16	21	11	23	12	30	18
CACCCCGCGCCCACAG	ref_3943_RC	9	10	10	5	10	4	10	5	13	6
CCGTTTGACTCCTAGT	ref_3943_RC	21	36	31	27	50	21	53	24	46	24
GTGATCATCTTTCTAT	ref_3943_RC	18	31	28	22	38	25	48	17	31	18
ATTCCGGAACTTGGAT	ref_3943_RC	6	9	12	7	12	7	18	11	18	8
ATCTTCCCGGTATCTT	ref_3943_RC	25	43	32	31	46	19	33	22	41	31
ACCGACCATGGATTGT	ref_3943_RC	2	6	3	2	5	0	9	3	3	2
GACGGCCGTGTTATGA	ref_3943_RC	65	85	71	59	86	67	106	46	83	45
TTAGCGTCAATGTGTC	ref_3943_RC	58	79	53	42	83	42	87	41	95	42
TAGGATATTAGATCGG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
AAACTTCTTAGGTCTG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CGATCTTCTGGTCTAT	ref_3943_RC	22	42	38	23	53	30	41	14	32	32
CATTAGAGCGATGGAT	ref_3943_RC	32	46	26	26	64	36	76	21	49	24
TGTTCCGTCATTCTAG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TCAATTCCTCGCCAGA	ref_3943_RC	0	3	1	2	1	1	1	1	3	0
ATCTGTATTGGCTCAC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TGGCGAAACAATTCAT	ref_3943_RC	4	10	4	1	1	5	11	2	4	6
TCAATCTCTCACGCAA	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TCGGACTCAGGACCTT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GCAATCATTTGGGATT	ref_3943_RC	34	44	48	35	62	38	87	40	82	36
ACTATTTGGTTTGGGT	ref_3943_RC	7	6	1	2	10	4	8	4	6	4
GCATTGTCTTATCGAC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
ATAGCTCGAGTAACCT	ref_3943_RC	20	41	27	25	41	23	40	18	37	27
TTGGTGCATACGGAGC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TTGGGAAGACGGGTTA	ref_3943_RC	0	1	3	5	4	1	1	1	3	1
ATTACCCCGGAGCCCT	ref_3943_RC	6	21	4	12	17	2	15	4	20	4
CTTTAAGCTCCCTAAG	ref_3943_RC	54	117	79	66	138	54	130	55	124	63
CCAATTAGTATTCCAC	ref_3943_RC	12	18	10	8	13	7	10	9	14	13
CGCTTACGGGATCGGT	ref_3943_RC	10	23	17	15	9	13	25	16	26	11
CCTCACCCTAGAGATT	ref_3943_RC	23	37	26	18	51	24	49	31	52	19
GGAACATTTTAGGATG	ref_3943_RC	8	5	4	4	10	6	12	2	5	4
TTACAATGTAGGCACG	ref_3943_RC	20	44	30	27	57	38	65	18	62	33
TTTAGGAAGCGTGTTC	ref_3943_RC	7	23	6	10	22	4	11	14	19	10
CCTAACAACATACGTC	alt_3943_RC	19	17	27	37	20	17	22	19	19	17
TTCGTTGCGAGTTATT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTGCCCCATTCTGTTT	ref_3943_RC	25	26	33	19	25	25	21	33	24	19
TCATCTCTACATATGC	ref_3943_RC	2	10	11	7	12	6	5	1	13	7
TTCCCGTCAGGTTGTT	ref_3943_RC	12	29	27	16	37	19	33	9	43	17
AGCTGCAGCGAAACTG	ref_3943_RC	2	7	5	6	5	1	11	1	7	3
ATATACTGCCCGAAGT	ref_3943_RC	8	20	12	19	19	20	13	7	21	22
GGTATACCCCGTTTTC	ref_3943_RC	13	26	6	14	25	2	20	5	24	6
ACTTTTCTGTTTGAAC	ref_3943_RC	30	56	31	26	55	24	52	25	50	21
TAAGTTCACCACGGCC	ref_3943_RC	14	35	25	25	26	25	38	24	45	19
CTTTGTATTACTGCAT	ref_3943_RC	33	47	41	33	53	24	38	25	54	26
ATACTATTAACTTCCC	ref_3943_RC	41	67	41	35	84	26	84	31	63	37
CTTCCGTATGCAATGC	ref_3943_RC	4	12	7	5	18	10	13	3	10	7
CCGCGCGGAGTAAACA	ref_3943_RC	0	4	2	1	3	3	2	1	3	0
AATGCGGCCAGCTCGA	ref_3943_RC	15	35	27	19	24	19	33	23	36	12
GCACTCTTTACCTACA	ref_3943_RC	8	9	3	4	10	1	9	4	13	5
GCGTTGAGAAATGAAA	ref_3943_RC	13	28	20	11	28	13	26	12	21	10
GTGCCTCTCATAATCG	ref_3943_RC	37	65	59	38	58	29	69	41	82	36
TACACCTACGTACCGT	ref_3943_RC	1	6	2	3	3	3	8	0	4	2
GTATTCAACTGCCGCG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TACTTGCGCTTTTCGT	ref_3943_RC	11	16	15	7	7	8	19	6	12	6
TAATAGACGATGGTTT	ref_3943_RC	5	3	4	1	6	4	3	1	4	0
ATGACGGTTGGATCTT	ref_3943_RC	56	84	80	55	99	56	81	57	103	69
TTAGTGTACTTGGGTG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCAAGGCTAGGA	ref_3943_RC	3	7	1	4	6	3	9	6	5	4
AATCGATATTTTATTT	ref_3943_RC	3	7	3	5	10	3	17	2	2	7
TGTTTGCAAGCCGACC	ref_3943_RC	9	15	8	11	24	10	10	10	17	4
CCGTGGCTTTGTTAGT	ref_3943_RC	30	36	31	28	52	35	54	18	55	20
TGTGTCAGCGTATAAC	ref_3943_RC	2	10	8	4	9	2	8	4	8	3
GTGGTAACGAGATCAC	ref_3943_RC	29	36	35	20	55	24	58	38	42	23
GGTACCCGTTAAAATT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTACGTGGGAAGCATT	ref_3943_RC	42	61	55	59	72	42	70	36	56	37
CCGTATACATGCGGCA	ref_3943_RC	3	31	1	5	38	3	30	5	43	3
CGCGATACTGGCCTTA	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTAATTTGTTTTTTTC	ref_3943_RC	1	2	1	4	7	4	3	4	2	2
AGGGCTGGTCAGGACG	ref_3943_RC	46	101	60	71	83	42	87	35	102	53
ACTTATAGCCGTCCGT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TTCATGGAGTTTTTTC	ref_3943_RC	11	20	10	9	22	12	17	12	15	7
GGTTCGCAAAGTCACT	ref_3943_RC	17	55	44	29	53	35	59	31	50	29
CCCCTTTAATCTGTCA	ref_3943_RC	3	70	6	9	76	2	74	7	76	3
TCACTGGATTCTTCAC	ref_3943_RC	16	34	14	24	27	17	32	23	35	18
AACCGACTCAGCTACG	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TAACGAACTGTGGTCA	ref_3943_RC	67	88	74	40	77	56	79	56	81	37
CCCTTTTTATTGCCAA	ref_3943_RC	29	29	22	22	38	33	32	30	42	14
CATGTGGACGTGCGGA	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
ACGAAGTACATATTTG	ref_3943_RC	12	34	21	16	43	20	41	15	49	21
GAATATTCGTACCTCC	ref_3943_RC	2	5	6	3	8	6	7	4	3	1
AAATATTAGACCATTT	ref_3943_RC	8	26	9	8	29	12	10	19	24	12
ATCAGCACTTCTCCCG	ref_3943_RC	4	35	2	3	37	1	45	1	54	2
CCCTGGATAGCGGACG	alt_3943_RC	43	91	67	46	59	27	93	42	116	49
TAGCGCTCACGCGCCA	ref_3943_RC	105	146	118	91	138	90	151	93	150	104
GAACACGTAGCGCTCG	ref_3943_RC	2	4	1	2	3	3	3	0	3	1
TTCGTATTGATGCATA	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTGCACTTTATCATAT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
ATCCCTGTGGAGCCTT	ref_3943_RC	0	3	0	0	1	0	3	0	1	0
TTAGCGTGTTGTTTCG	ref_3943_RC	10	37	21	16	40	20	31	14	29	17
CGCCTTTCTGAATGTT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
AATGCTACGCTGTTGC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
TGCTTATTCCGTAGCT	ref_3943_RC	9	11	11	10	23	5	9	5	17	3
CAATGCGTATTGGTTG	ref_3943_RC	4	11	2	3	7	1	3	4	13	4
TCCTGTGCGTGGAGCT	ref_3943_RC	15	33	26	22	32	18	38	14	24	14
GAACGTACATATCCGG	ref_3943_RC	12	6	5	8	22	6	12	6	18	3
GGTTTCGAGTTGCGCC	ref_3943_RC	26	52	47	31	63	23	49	38	64	32
CTATATAATGTGCCGG	ref_3943_RC	27	61	29	36	50	31	42	25	61	20
GCCTTACCGCGCGTGG	ref_3943_RC	20	33	18	9	23	13	31	10	32	11
CCTTATAATAAAACCA	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
GGCTGGTTTTGACACA	ref_3943_RC	7	6	12	7	23	7	18	3	17	5
GGGTTAGGTGGTTTAG	ref_3943_RC	89	121	92	77	99	92	135	87	130	82
TTTACTCCGCGTTGGT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTATCAGTGACCCCAT	alt_3943_RC	29	20	33	26	30	26	23	36	43	21
TGGTAAAGCTTATATG	alt_3943_RC	36	33	39	34	41	31	27	31	49	32
TAACAGCAAATTGACA	ref_3943_RC	9	23	13	14	19	21	31	13	20	17
GACAGGAACTAAACAC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CGCCTCTAGAACAGTT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CATTAAGTCTCAGATC	ref_3943_RC	68	96	68	49	104	64	87	43	106	35
TCCCAAAAAATTGGGC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CGGAACTTATTTAGAG	alt_3943_RC	67	80	73	66	59	52	78	68	93	50
TCCTTTTCCGTAAGCT	ref_3943_RC	25	50	47	31	57	30	63	34	59	30
TTCTTTCATGCAAGCG	ref_3943_RC	2	6	4	5	2	2	10	2	4	5
GGAGGGGCTCTTAGAC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTGCTGCCATTTGTTT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTTGATACGGTTAACG	ref_3943_RC	99	188	90	80	190	94	194	85	204	68
CATATCTATTTTCCTC	ref_3943_RC	27	63	41	24	61	31	47	26	48	32
CGTTTGAATTCATCTC	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CCTTTATGGTACATGT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
CTTCGACAGGCAGTTA	ref_3943_RC	11	19	10	15	17	8	19	8	15	10
AGCGCCCGGGCCTAAT	ref_3943_RC	0	0	0	0	0	0	0	0	0	0
GTGGACACGCCGTCAA	ref_3943_RC	116	194	133	97	201	92	208	89	231	96
TAAATTAGGGCGAACA	ref_3943_RC	39	58	54	58	70	57	56	49	55	33
ACGGCGGGCCACTTTG	ref_3943_RC	8	16	9	10	19	7	18	9	25	6
GACTCTTTAGGTATGC	alt_5754_new	27	22	18	12	23	11	27	15	29	12
GGTGTTGTCTGACACT	alt_5754_new	79	191	128	103	227	92	213	69	219	80
CGGACCTCATACCACC	alt_5754_new	2	6	4	3	5	3	4	1	5	2
TGGTATATTGTATCCG	alt_5754_new	0	0	0	0	0	0	0	0	0	0
AGATTCATGGTGTAGG	alt_5754_new	50	54	55	40	73	33	85	33	88	53
CTACCTGTGCATCGAT	alt_5754_new	9	7	7	5	19	6	15	5	10	10
TTTCTAAAGGTTTTGG	alt_5754_new	3	12	4	4	6	5	13	7	7	1
TTTGGCTAATATCTTT	alt_5754_new	0	0	0	0	0	0	0	0	0	0
CTTAATGTCGTAATGA	alt_5754_new	23	49	37	33	43	30	42	34	52	29
GGGAACAACAGCGTCT	alt_5754_new	0	0	0	0	0	0	0	0	0	0
CATGACGATTTCGCTT	alt_5754_new	41	48	33	33	59	27	57	32	61	25
GAGTGTGATGTATTGC	alt_5754_new	4	20	17	13	15	5	21	5	17	10
GTTATGGTGCCGGTCC	alt_5754_new	19	23	21	18	27	12	44	23	29	13
TTCTTCCGACCGCTCC	alt_5754_new	6	22	5	10	14	5	40	10	29	6
CTTTTCAACTTACGAA	alt_5754_new	42	83	54	48	84	43	96	43	110	38
CTACACAGATCATTGG	alt_5754_new	26	50	34	34	57	32	71	20	78	17
ACGGTTTCGTTTCTTT	alt_5754_new	11	10	14	4	12	7	7	8	15	14
AAGCAGTACTATCAAT	alt_5754_new	22	22	27	11	49	8	46	18	47	18
CAACGTGTCAATCTGC	alt_5754_new	13	39	19	21	30	19	38	13	36	25
AAGGGGCCTAGATCCG	alt_5754_new	2	4	4	0	7	2	7	0	9	5
TCTGGACCTGGTCCCG	alt_5754_new	0	0	0	0	0	0	0	0	0	0
CCGTGCCTAAATTTAA	alt_5754_new	3	6	0	3	3	5	7	2	4	4
GTTCCGCTAGGAACCC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
TCATGATATAGTGCTA	alt_5754_new	4	8	9	7	3	8	12	5	9	5
GCGTTCTTTCTTCTAC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
CGGCCCTCATACCACC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
CTAATTCGAGTTTGAG	alt_5754_new	8	18	8	13	7	17	17	13	25	8
AAATGCGACGGTTAAC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
GTCTAGCGTTTAATGC	alt_5754_new	14	46	9	16	41	18	34	15	19	12
TTAGAGATTGGCGGGC	alt_5754_new	33	56	37	33	73	38	62	28	54	31
TGTCGCAGCCTTACTC	alt_5754_new	23	44	34	31	50	13	47	21	49	30
TGTATCTATGGTCGAG	alt_5754_new	24	46	15	25	36	17	37	23	31	17
TCACTTTACTTTTACA	alt_5754_new	11	6	4	5	10	1	10	3	7	1
CGTCACATGCCAGAAC	alt_5754_new	6	9	5	9	20	8	10	6	15	7
AGCTCAAAGGAACAAT	alt_5754_new	10	15	11	7	33	5	20	16	15	10
GTCGGTGTCTCTCTTA	alt_5754_new	4	13	3	5	7	2	13	2	16	3
CAGGGTTAGACAGTCT	alt_5754_new	18	30	13	11	28	16	27	6	26	6
TGTGGACACACTTGGA	alt_5754_new	0	0	0	0	0	0	0	0	0	0
TCATACACGCCGGGTA	alt_5754_new	0	0	0	0	0	0	0	0	0	0
GTCCTGATTAGGTTTT	alt_5754_new	30	53	30	23	74	34	69	35	58	30
TCTCACCTACCTAGGC	alt_5754_new	8	25	10	4	11	8	8	2	8	5
AGCATGTGCGCACTAT	alt_5754_new	10	19	12	10	23	7	23	6	32	16
TAAAACCTCTGAGCGG	alt_5754_new	0	0	0	0	0	0	0	0	0	0
TCATTAGGATCGTTCT	alt_5754_new	10	19	11	2	14	14	20	7	18	6
TCATTAGTGGTGCTCC	alt_5754_new	8	6	11	4	7	6	10	0	13	3
TTGACTTTCTTTTCTC	alt_5754_new	34	52	34	33	41	18	48	21	49	42
CAGGTTAGTATGGGGG	alt_5754_new	11	20	9	12	24	9	27	7	22	4
CCCCAACACTACGTTC	alt_5754_new	13	28	11	12	26	7	31	7	31	15
GCCGCCACCACCTCCT	alt_5754_new	0	0	0	0	0	0	0	0	0	0
AACGCACACGGGCTAT	alt_5754_new	0	0	0	0	0	0	0	0	0	0
AATACGGTACTCGTTT	alt_5754_new	4	12	6	4	8	3	8	5	13	3
ACGGTCATGGCTTCGT	alt_5754_new	18	25	20	14	25	18	20	15	24	19
CCTATTGGGAGCCTTT	alt_5754_new	5	19	5	8	13	9	15	5	10	5
TCAATGGTGTAATTTA	alt_5754_new	3	5	1	5	2	6	8	5	6	3
TGGTCGTGTGGGACCT	ref_5754_new	47	119	72	67	120	35	133	52	146	70
TATTTATCCAAACTAA	alt_5754_new	24	31	29	23	42	29	40	19	39	15
AACTATTAGGTGAGTC	alt_5754_new	5	8	9	2	11	10	17	4	12	5
TGTATTCGATAGTTTG	alt_5754_new	8	20	15	9	12	8	18	8	23	5
GAATTATAGTAGCCAT	alt_5754_new	20	29	21	17	35	18	31	25	34	16
TTGCCGTGAAAATTGA	alt_5754_new	1	3	1	2	1	2	0	2	4	2
GACGCTCTGCTTGACA	alt_5754_new	28	63	36	32	63	32	67	29	77	29
ACAGCCCTCTGTTGAC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
CGTGCGTAGATTGTCG	alt_5754_new	0	0	0	0	0	0	0	0	0	0
GTAATCCGGTGCTTCT	alt_5754_new	2	4	5	2	7	1	7	4	4	2
TTAGCTGGAAGAGCTT	alt_5754_new	9	18	12	10	17	8	14	4	18	5
GTTACTTTGGGTCCCT	alt_5754_new	10	21	9	10	26	10	16	7	17	5
TTTCCGTTCCAAGTCA	alt_5754_new	27	63	33	34	51	33	60	33	88	37
TCATAAATCACATAAG	alt_5754_new	15	20	12	20	19	10	18	16	25	20
TTACTCGGAGGAGAAT	alt_5754_new	32	41	23	26	39	13	58	15	52	19
AGGTGCTTTCTGCCGG	alt_5754_new	34	80	54	40	89	45	80	28	71	32
GTAAATGGGCCGCAGA	alt_5754_new	0	0	0	0	1	0	0	0	0	1
GTTTTATTGTTTGTCT	alt_5754_new	80	136	115	92	128	76	175	88	188	73
GAAGAACCTCGAACGT	alt_5754_new	10	18	8	5	13	16	22	7	24	8
AGTTACAATGGGCGTG	alt_5754_new	17	38	23	14	26	27	28	19	22	19
ATTATACATCGGTAGA	alt_5754_new	5	14	4	7	9	4	3	5	8	6
GGCTTCCGTATCCTAC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
TTAATCGATCGAGGTC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
AGGCCGACAGATTACA	alt_5754_new	3	4	1	2	7	7	6	1	7	4
ATGCCTAAGGGAGCCC	alt_5754_new	0	0	0	0	0	0	0	0	0	0
ATTACAACATTCGGCC	alt_5754_new	32	53	48	54	59	36	69	37	60	46
TATGATTTCGCACTTT	alt_5754_new	0	0	0	0	0	0	0	0	0	0
CGGCCTGGCATTCGGG	alt_5754_new	86	49	99	81	38	63	44	68	39	77
TTGCGGTTGCTATACC	alt_5754_new	12	11	10	5	11	9	12	7	14	8
ACAACGCTGGATGTGG	alt_5754_new	0	0	0	0	0	0	0	0	0	0
TCTGTCCTCTCACTGT	alt_3351_reverse	5	12	5	8	7	7	10	9	4	9
AGTAGGTCTGACATTG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GACGGGTGTGACACGT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGTGAATCATTTT	alt_3351_reverse	40	34	48	28	24	37	22	39	32	32
GGCATCGAGTCCTGCG	alt_3351_reverse	67	66	64	61	40	71	41	64	54	49
GAGTCCCCAAAATGTG	alt_3351_reverse	37	26	37	35	30	32	24	38	23	38
CAAGGTGTTTAGCGCT	alt_3351_reverse	1	0	1	1	0	0	1	0	3	0
ATTGGGGCGTCACACT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCCCGGATGAAAC	alt_3351_reverse	183	184	231	197	147	206	176	182	154	157
GCCCACAAAACTCTGT	alt_3351_reverse	5	6	12	7	5	8	5	6	7	10
TGGTATTTTTTTTTCT	alt_3351_reverse	61	30	47	35	28	36	34	25	30	38
GCAATTCCAGTCCGCG	alt_3351_reverse	29	21	43	26	18	19	32	35	30	33
TGCGTACCCACAGTTG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGTTACCCGACTA	alt_3351_reverse	5	15	15	17	10	9	16	10	21	7
TGAATTGTTCGCCACT	alt_3351_reverse	25	12	25	22	17	25	13	18	33	23
TCTGGTGACCGTTTAT	alt_3351_reverse	59	50	80	72	47	78	42	56	69	65
CAATAGATCTCATGAC	alt_3351_reverse	55	52	70	52	40	54	60	71	56	55
GGAGTGTTCACAGGGA	alt_3351_reverse	57	44	61	54	58	58	49	47	65	64
CAAAAGGGGTTTGTCC	alt_3351_reverse	140	105	126	130	104	127	105	125	130	137
ATCGGTCGCCCGAGAT	alt_3351_reverse	4	4	3	2	4	2	4	5	1	4
TCAGTTCTGGCCTTAG	alt_3351_reverse	112	104	119	111	112	110	110	87	125	104
CGAGCGATTCTCAGGA	alt_3351_reverse	40	26	50	40	32	27	23	31	30	25
GTAGTCGCCCTTTGAC	alt_3351_reverse	33	20	23	39	21	24	28	27	26	20
AAGAGTTCACCTGTTA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CTCCAGCCATGTTTCC	alt_3351_reverse	66	58	77	67	96	72	80	72	89	59
CCTGGATTTTCTACGT	alt_3351_reverse	51	74	76	71	43	64	50	60	59	56
TCTTGGATGGTTTTTT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTAGTCACCGCA	alt_3351_reverse	84	99	116	92	80	64	85	119	83	83
CGGGTTTATATTTCTG	alt_3351_reverse	84	57	99	65	72	71	68	62	66	71
TTCAACGTTATTTCGC	alt_3351_reverse	9	9	7	5	9	8	7	7	5	5
TACAATGTGTCGGTGT	alt_3351_reverse	56	51	55	51	37	52	43	49	50	48
GTTACGATATTCAGGG	alt_3351_reverse	8	8	17	5	5	7	7	9	8	7
CCACTACAATGCTCTG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CACTGCGATGCGATTG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTACTGCGGGCGCTTG	alt_3351_reverse	32	24	49	23	15	23	23	22	28	22
CAAGTAGCCTACCCGC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TGTATGTTCTCAGGTA	alt_3351_reverse	38	32	28	32	31	25	24	27	30	27
ATTGATAAGCTACGAC	alt_3351_reverse	33	37	33	40	33	43	43	33	37	34
TGCACACGTACACTGG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGTTGTCTCCCA	alt_3351_reverse	28	32	36	31	34	26	42	33	38	24
TGGTATTTTTTTTTTC	alt_3351_reverse	1	0	0	0	0	0	0	0	0	0
GATATAGGTCATGTAG	alt_3351_reverse	23	21	29	17	27	24	30	26	17	18
TTTGTCTCTCTGCGGT	alt_3351_reverse	43	38	57	65	43	32	55	43	51	34
AAATGTCCTGCCTCTG	alt_3351_reverse	12	13	11	20	10	15	18	22	8	19
ATGCGTTCTCCGGCCG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GACTCAAAAGTTATTG	alt_3351_reverse	295	263	318	314	255	304	250	294	313	263
ATCATCACTGATCAGC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGAAGAGGTTATG	alt_3351_reverse	11	2	9	7	1	11	11	6	8	4
GTTATACCCCGGTTCG	ref_3351_reverse	72	81	83	68	85	53	69	64	75	62
ACTTTCCGCGGTTGTA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
AATCTTTGTACAGCTG	alt_3351_reverse	17	17	34	20	16	15	24	31	22	21
TTTGTGGAATCCGCGT	alt_3351_reverse	28	30	57	34	32	34	26	28	32	28
TTCGTTCCCGAGTCTT	alt_3351_reverse	4	11	12	8	9	13	4	9	8	14
TCGGTCCCGACGGTGA	alt_3351_reverse	67	59	90	77	65	86	67	66	59	89
TGCCGGCCATATGCCG	alt_3351_reverse	15	15	14	8	8	14	10	11	15	21
TACTTCGGGCCTGTGA	alt_3351_reverse	107	101	104	114	101	101	121	88	90	105
CCCATACTGCCAGTAA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CACTACTGGTAAAGGA	alt_3351_reverse	32	12	41	34	18	17	33	27	27	27
CTGTAGATTAAGGCCG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GTGAAGAGTCCTTCGC	alt_3351_reverse	29	25	23	22	36	29	23	45	30	26
ACTGTTCCTCGTTATC	alt_3351_reverse	90	87	101	85	64	99	75	84	97	93
CTACTTTTTCGTCCAA	alt_3351_reverse	13	19	25	20	15	21	18	18	10	20
GTCCGTACCACTACGA	alt_3351_reverse	35	26	34	21	27	25	31	28	26	26
CGGTACGGGGTTCGAG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCTACTCCACTGAATA	alt_3351_reverse	21	24	31	21	28	21	23	24	25	19
GTACGCGCGACCCTCA	alt_3351_reverse	59	38	65	65	51	54	66	41	47	57
TTACCGGTTTAACTCG	alt_3351_reverse	170	143	224	157	160	163	137	151	135	131
TGTTTATCGTTCTGCG	alt_3351_reverse	4	3	3	0	4	0	2	4	5	1
TTCAGATCGAACGGCC	alt_3351_reverse	16	18	15	17	12	22	14	15	6	6
CCCACCCCTAGCGTGT	ref_3351_reverse	71	100	103	93	103	76	112	93	106	85
GTTTTGGCATTATCTC	alt_3351_reverse	24	16	16	16	15	18	11	8	21	11
GCGGCCCGTATGGAAC	alt_3351_reverse	126	124	179	121	109	127	147	124	133	131
CAGAGGCAGTCGTCGG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
ACTCAGTCGCAGCCTG	alt_3351_reverse	36	35	46	38	35	37	38	20	35	27
GGATTTTTGCTTTCAG	alt_3351_reverse	18	9	10	7	14	17	9	11	6	15
ATGTGGTTATTCCTTG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CTGACTTTCTTGGGAC	alt_3351_reverse	53	53	75	51	40	65	72	47	51	67
TCGACATGTCATGTCT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGTGGTCCATAAT	alt_3351_reverse	15	21	11	27	18	15	24	18	17	20
GACCGGTTACTGCCCG	alt_3351_reverse	34	26	22	26	17	31	23	18	32	18
CTAAGTCGTTTGTTCA	alt_3351_reverse	25	36	59	35	34	41	28	32	45	31
GAGCAATACAAGTACT	alt_3351_reverse	47	29	53	38	24	38	36	44	33	37
TACGGTGTGTGGGTAA	ref_3351_reverse	6	7	10	15	11	5	10	1	7	5
CAGTCCATTCATGAAC	alt_3351_reverse	115	104	124	104	124	93	92	106	84	111
TGCTGGAAATCGTAGC	alt_3351_reverse	57	37	70	65	39	46	52	58	58	52
GCCTTATCACGACCCG	alt_3351_reverse	108	60	119	109	72	92	86	87	91	93
CGCTCTATCATCTGGG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GACGGGGGGAGTCTAT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGCATTATTTTCG	alt_3351_reverse	8	0	13	9	4	11	9	8	13	5
CTGCATTACCCGTCAG	alt_3351_reverse	6	8	3	4	5	9	2	8	9	8
CAGCCCCGTGGTTCTA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GCATTCCTCGGTCCTA	alt_3351_reverse	71	44	84	57	58	51	49	46	47	59
ATTTTTTATAAAGGTC	alt_3351_reverse	30	23	39	31	20	40	35	25	18	26
TGACTCCAAAGAGTTA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
AGAACTTGTGTATCAA	alt_3351_reverse	34	32	48	35	37	38	35	35	20	45
GTACCTCATATGGGTA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TGCCATCTACGCCGAA	alt_3351_reverse	14	12	8	16	23	13	16	8	23	13
GCCACGGTATAGTGCT	alt_3351_reverse	19	22	25	21	24	16	18	18	13	17
TATATTGCTGTGATGC	alt_3351_reverse	67	54	66	36	47	54	68	65	50	52
ATAAAGACAGGCTGGC	alt_3351_reverse	23	23	33	29	21	24	25	26	26	25
TACGCGCAAAGAATAA	alt_3351_reverse	18	9	11	8	8	12	6	9	13	7
GTTACCAGCATTGCGG	alt_3351_reverse	30	27	33	30	32	19	28	24	28	25
TGTATCTGCTTATTTG	alt_3351_reverse	28	22	36	21	17	23	25	30	24	29
CCGAAGTAGGTTTCAG	alt_3351_reverse	20	33	26	18	32	35	32	31	25	14
AGACGTATGCGTACGG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGGTCCGACCTCC	alt_3351_reverse	58	44	62	61	52	59	69	56	73	52
GCGAACATTAGTCAAC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCCTTGGGCTTAG	alt_3351_reverse	38	34	37	25	18	22	21	20	33	17
CCGGTTGTGACCCGCT	alt_3351_reverse	3	4	1	5	3	1	2	5	6	0
ACTAGATCTCTAGCGC	alt_3351_reverse	40	26	42	49	31	49	25	32	39	28
TTCAGTTACGTTAATG	alt_3351_reverse	42	54	46	33	52	33	44	42	52	32
GGTCTTCTTCTAATTG	alt_3351_reverse	12	7	13	18	9	13	8	7	5	10
GTCTGAAAATCATGGC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTGCCCCCACAC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GAGCAATATGTCACTC	alt_3351_reverse	24	23	30	23	17	23	19	28	21	24
TTGTCTGTGTGTACCC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
AATACCTATTTGTACG	alt_3351_reverse	37	49	70	53	51	42	45	39	44	52
CTTTTTTGTCATTCGT	alt_3351_reverse	84	55	67	65	42	68	53	82	62	56
GCCCACGTACGGTTGG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTCAACACACAAAGGT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGAACGCTTGTAA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CACCACGAAACCTTAC	alt_3351_reverse	5	4	1	1	10	0	4	3	3	3
TGCTGGCACGAAAATT	alt_3351_reverse	16	16	18	13	12	9	28	6	19	9
GACTGTGGATCTCTGG	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CAGTAGAATTCCAGTA	alt_3351_reverse	1	0	0	1	0	3	6	4	0	2
GTTACTTCATTTTTCG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCGGGACACCCAT	alt_3351_reverse	165	113	153	103	135	143	97	107	135	114
CATCACCATGTAACGG	alt_3351_reverse	85	68	81	123	71	95	70	81	74	80
CGACGTTCACTCGGTG	alt_3351_reverse	36	34	43	39	24	26	28	36	33	23
CCCGGCGTTCTCCGGG	alt_3351_reverse	19	19	37	17	18	19	24	25	44	36
GCGGCTTGCGGGACGA	alt_3351_reverse	2	0	4	4	3	0	3	1	3	5
GGTTGCGAGCCAGCAA	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGTTCACCTGTTA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGTAATGGTGTAA	alt_3351_reverse	0	5	6	5	3	5	2	2	5	1
TGGCTTAGTATTTTAG	alt_3351_reverse	9	8	6	13	16	8	11	9	13	7
CTAAATTGGAACTCAG	alt_3351_reverse	42	24	29	41	34	26	34	29	29	23
GCGGCCGGTCACCCGG	alt_3351_reverse	23	10	16	9	11	15	20	12	20	15
CACGTCAGGCTCTGGT	alt_3351_reverse	22	15	31	23	15	22	11	10	14	7
TGGTATTTTTTTTCTA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CATGCTGTCCACTGTG	alt_3351_reverse	35	62	42	40	53	31	52	35	67	49
GACCTGGCTGTAGGCT	alt_3351_reverse	53	51	70	59	39	54	57	48	41	58
CAAATGAGGGACAACT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
ATCTATCCTCTCTTCA	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTTACTGCGGCAATCT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GTGCACACCGTTTACC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GATTAAAATATGGCGA	alt_3351_reverse	54	19	61	38	28	42	32	51	19	38
CAGTGACCGGTTCCGC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCTTTAAACCCTT	alt_3351_reverse	8	4	7	9	4	6	11	9	7	11
CTCATGTTCGCATGCG	alt_3351_reverse	9	3	5	19	8	9	7	13	8	14
CCACTATGGCATAGTG	alt_3351_reverse	60	47	74	70	60	64	72	67	54	71
GGCTTTTGTTATTCTT	alt_3351_reverse	17	10	19	19	12	24	16	13	15	10
CCTTTCCCCCCAGTAT	alt_3351_reverse	109	78	150	110	108	105	77	103	111	101
TGCGCGGCTAGAACGT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
TGTCGCCGTCACGACC	alt_3351_reverse	42	29	49	55	38	37	35	33	31	31
CTAACGGCTAGCGTGT	alt_3351_reverse	37	43	58	33	33	36	46	36	41	28
ATGCGCGCCATCATGG	alt_3351_reverse	54	31	80	69	22	43	29	46	28	71
GCTACGCCTAAGCCCT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CCTACTATATCTCCAT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGGCACTGTAATG	alt_3351_reverse	6	7	3	6	1	3	2	6	6	2
ATATTTTTACCTACGC	alt_3351_reverse	12	18	23	16	10	10	15	27	9	9
TCCTGGATGAAAACTT	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTGTCAGCAAACG	alt_3351_reverse	65	41	66	66	53	45	37	47	66	45
TAGACGACCTATAATG	alt_3351_reverse	49	43	61	62	40	33	47	47	47	47
TCGCAATCTGCGATTC	alt_3351_reverse	23	22	32	24	14	18	17	16	20	15
TTATTGTATACAACGC	alt_3351_reverse	0	0	0	0	0	0	0	0	0	0
CCGGCTCCTTACCCTT	alt_3351_reverse	10	13	10	5	17	6	7	9	15	7
AAAATTTAGACGTTGG	ref_1948_missing	2	9	3	0	12	5	6	3	4	3
GTTACCGTGATCAAGA	ref_1948_missing	9	32	13	9	37	16	37	16	47	7
GCCGGATATCGTGGGG	ref_1948_missing	21	53	14	18	34	25	53	22	55	17
GTGATTCTCAGTTCTG	ref_1948_missing	8	24	8	15	17	4	13	6	17	5
AGACTGGGCATAATAT	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GATCTGGTACTTAATG	ref_1948_missing	23	57	27	18	82	26	61	32	70	19
ACAGTTGACCCCCGGC	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGGGTCTAGTCC	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
CTGCCCTCTTGACGAC	ref_1948_missing	2	2	4	3	5	2	7	5	4	0
CTGGGATCGCGTGCCT	ref_1948_missing	4	11	6	3	11	5	11	7	13	0
GTCGGCTTCCCTGATC	ref_1948_missing	8	23	14	2	19	10	13	6	21	5
CGGTACGAAAGGTCAT	ref_1948_missing	5	23	10	9	22	13	11	6	16	5
TATACATCTATTCATT	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
TGCTAATTTAATTCTA	ref_1948_missing	3	7	12	4	15	7	11	5	17	5
CGCGACCTACGGGTGT	ref_1948_missing	20	55	24	21	74	20	52	17	57	28
GTACGCTACGGTATTT	ref_1948_missing	13	22	13	15	33	28	34	19	27	12
TCTGAGGTAAGGTAAT	ref_1948_missing	20	56	35	18	66	37	54	28	59	24
ATATCAAATTGAACGA	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
CTAACCTCAAACCCGC	ref_1948_missing	7	11	8	6	25	5	18	4	19	3
CAAGGTATAGTAGTGA	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GTTTAAGGTTTTCTTA	ref_1948_missing	9	14	15	12	16	7	20	6	22	5
GGTATTTGCATTCGAT	ref_1948_missing	18	41	17	19	43	23	27	16	48	17
AGACCTCGCGTATTTG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GGCCAAAACATCATCA	ref_1948_missing	77	178	82	65	214	78	206	65	206	78
AAAAGGCAGGAGATTC	ref_1948_missing	4	5	2	2	3	0	3	4	2	2
TTCTCATAAAATATTA	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
TATCCCGCGTCGTCAA	alt_1948_missing	2	4	0	1	4	1	8	1	8	2
GACTGAATACAAGGAG	ref_1948_missing	2	7	2	5	9	2	8	7	10	1
TACCCCAGTTTGTCGG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
TGGCGCACCAATCAAT	ref_1948_missing	10	39	15	13	35	15	35	13	41	13
GTCATTCGAGCCGTTC	ref_1948_missing	9	11	13	5	14	12	9	6	19	3
TCCTCCCCCGTATATT	ref_1948_missing	40	55	39	20	66	26	59	29	63	28
TGGGGGCGTTTGTCGT	ref_1948_missing	151	285	180	125	249	125	294	136	284	113
GGTAAACGTGTTCTCG	alt_1948_missing	56	101	57	54	104	52	103	31	99	47
TTGCAGTGAACACCTA	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
ATAGTTCTGAGGCCCT	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
TGATTAATAACCTCGT	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
TCTTGTTTGTTTCCTG	ref_1948_missing	10	24	11	10	23	10	29	16	17	10
GATTCAAAGGCGGCAA	ref_1948_missing	19	41	21	22	37	20	48	13	40	22
AGATTCTGTCCGTCAC	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GGTTCGGATAGCTTGT	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GTAACTAAAGCACCTA	ref_1948_missing	4	8	9	9	10	5	6	12	18	6
TCTTATCCAGTAGGTT	ref_1948_missing	10	24	11	24	29	3	22	5	21	6
CTCACTTTGGCTCCCT	alt_1948_missing	2	34	8	7	45	4	54	1	43	4
GGCTAGTTAAACATTT	ref_1948_missing	3	9	4	6	14	8	10	2	16	5
CTAGAGGGGTGCTTGA	ref_1948_missing	10	19	15	8	35	6	19	14	25	14
CCCTATGATACTGTGA	ref_1948_missing	8	12	11	9	15	4	14	6	17	3
AGTACTAAAAGTACGT	ref_1948_missing	0	0	0	0	0	0	0	1	0	0
TTCCTTCACGCGACAA	ref_1948_missing	7	15	11	13	12	7	18	4	8	6
GCGCGTTTTTTCTTCA	ref_1948_missing	13	29	23	14	41	24	38	23	31	16
ATTGTCGTTGTCCAAT	ref_1948_missing	11	22	13	11	20	8	26	5	20	10
ATGCCTCACGTCGCTT	ref_1948_missing	3	16	7	11	18	5	36	8	22	5
TCTTGTTTCTCTATAG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GGGCCAATGCAGCCAG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GTCGTATGCTACGGGG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GATTGATATTGTTGTG	ref_1948_missing	9	15	7	9	18	9	19	5	20	8
AAAAATGTGGCGGTTC	ref_1948_missing	22	40	22	25	31	10	42	15	28	14
TGATGCACGGCTTTCT	ref_1948_missing	6	9	18	3	10	5	13	3	10	4
GGCGTTTGTTTGCTCG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
TTTCTTGTCCTCTCAC	ref_1948_missing	5	12	5	8	10	3	19	5	13	6
GACAGCTCCAGACTCG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
ACTCTTCATTGCGGCG	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
GGAATGGATTCGGCTT	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
CTAAGTGCTGGGGTAT	ref_1948_missing	22	35	15	12	31	7	39	20	53	13
CGCCGGGTTCGTAGTT	ref_1948_missing	6	9	19	2	6	6	12	7	16	4
GTAAAACGTCCATGGG	ref_1948_missing	18	32	21	19	49	10	37	13	34	15
TTTCGTTTAATATGAT	ref_1948_missing	0	0	0	0	0	0	0	0	0	0
AGGCGACTTGAAGTCG	ref_1948_missing	3	21	14	13	14	5	21	8	15	11
AATTAACTCAATGTAG	ref_1948_missing	13	40	19	20	32	12	50	15	35	11
AGGCCCTAATTATTCG	ref_1948_missing	3	15	8	4	10	10	9	2	17	5
TGGGATCCGATTGAGT	ref_1948_missing	26	41	37	27	54	17	61	22	55	24
ATTTCTGTTTGACAAC	ref_5715_new	102	80	130	139	66	105	87	127	74	92
TTTGGTTGACTATTAG	ref_5715_new	66	66	85	70	46	75	51	61	52	75
TTGCCCCTAACAGACT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TGATGTTCGCTGCCCA	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GCTTAGGGTTACACCG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TTATCTTTCCTAAGTG	ref_5715_new	3	3	6	4	6	1	3	2	4	2
GCGGTTGGGATCGCGA	ref_5715_new	84	54	111	74	49	106	52	80	58	71
GAATGGTTGTTTCTGT	ref_5715_new	51	55	88	59	43	71	52	62	52	56
GCATTTCTTCTCATAT	ref_5715_new	127	67	112	107	64	101	78	81	56	91
TTTTTTGATTTTGGAC	ref_5715_new	5	2	2	6	5	4	2	3	1	3
GTGCGTGGTCGCCTTC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
AATTCTGCGCTCATTC	ref_5715_new	55	38	63	75	24	50	51	61	45	53
ATCAGCCGACGTACGT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TTAAGATCGTGGTTCT	ref_5715_new	19	20	32	23	16	26	10	21	16	16
GCATTAAGGGCATAGT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GCCATGCGACTTTGTT	ref_5715_new	16	14	26	21	19	17	16	17	12	15
GCGCAACTTTTGTATG	ref_5715_new	53	34	61	59	38	53	43	68	35	49
GTAACGCGACTTACGA	ref_5715_new	60	55	78	72	35	54	54	58	32	66
CCCTCTGCTTTCCTCG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GGACCCGGACATGGAG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
CCGCTTACTGTTTTTA	ref_5715_new	24	25	25	22	12	19	9	18	14	16
CTGTTTATTAGGCATG	ref_5715_new	281	208	395	328	227	323	248	319	240	265
CTCTATTCCGATTTCG	ref_5715_new	121	100	161	120	100	102	89	102	108	106
CATTGCCCCGCTACCC	ref_5715_new	21	18	32	21	25	25	13	20	17	25
CATGCGAGTTGACATG	ref_5715_new	79	42	106	77	52	70	47	77	69	68
AGTGGGAATTAGTGAA	ref_5715_new	407	263	450	393	256	383	246	357	253	364
GATTTCGTAGGTACTA	ref_5715_new	132	97	164	141	81	124	113	132	90	80
CCGGGAGACAAGGATT	ref_5715_new	11	47	16	21	48	6	59	11	36	11
AGCCTTTTTATATAGA	ref_5715_new	75	50	80	56	53	52	54	59	48	42
ATGATTTGATCTATTG	ref_5715_new	59	28	63	67	39	46	47	57	41	53
AAGGGACTAAATAGCG	ref_5715_new	29	15	24	31	16	24	7	19	18	16
GTAGTAGCCGGTCAGT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TTTTCAATGTTATTGT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GTCCGACGCAATTGTT	ref_5715_new	36	27	32	39	21	30	26	28	33	20
AACTTATGCATTAATT	ref_5715_new	80	43	99	77	40	66	43	82	39	53
ACTGTTCTTCCGAGGT	ref_5715_new	25	13	33	32	20	34	16	18	14	17
CCGTAGAACTCGGTTT	ref_5715_new	45	51	77	59	61	51	52	51	49	54
GGCTCACCCGAGGATA	ref_5715_new	45	25	41	49	24	25	24	31	27	31
GTTTTCTTGCCTTTTG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GGCACTCTGACGAAAC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TAAGGCAGGATGACCT	ref_5715_new	9	16	22	20	12	14	17	16	16	15
CAAGTCCTGGTCCGTG	alt_5715_new	26	14	44	39	13	21	21	28	17	25
GATTCTCTGTCCTGCA	ref_5715_new	76	61	103	57	46	88	59	104	69	80
CACGCCTATGTACTGT	alt_5715_new	65	50	102	77	68	53	77	66	59	51
ATTTGGGCCACGACCG	ref_5715_new	25	7	20	18	7	19	10	13	18	15
CTTGTTCTTGCTGGTC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GGATGTTGATGTTATC	ref_5715_new	30	15	38	26	15	22	18	25	14	21
CGAGTTAATTAGCTGG	ref_5715_new	173	173	232	215	162	184	166	202	160	175
GTCCAGTACGCTCTAA	ref_5715_new	42	35	58	50	37	42	30	55	37	41
GCAATTTATGAACCCC	ref_5715_new	24	10	28	19	6	17	14	23	17	17
GTTCGAAGTACAGTAT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GTTAGAGTTAGTTCCA	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GGACTGCTTACTGTAA	ref_5715_new	42	25	64	52	40	36	27	42	42	40
CCCGATCGCTTCTGCG	ref_5715_new	22	26	31	36	35	23	24	32	26	26
TGTGTACTTTACCCCC	ref_5715_new	37	20	34	42	16	30	17	27	24	41
GAGAAGGCACGAATTC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
ATTCAGTTGTATGTAT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
ACGATCGAAAGACACG	ref_5715_new	10	14	15	8	10	9	5	15	13	14
TTGTGCGCCGGAGTTA	ref_5715_new	87	42	87	85	71	69	81	65	50	70
ATCAGACTAGCCGCGT	ref_5715_new	17	12	14	22	11	17	17	13	8	9
TACCAGCTTTCCGGAC	ref_5715_new	34	11	48	39	26	23	23	27	26	30
TGTGCGGGGTTTTCTT	ref_5715_new	102	52	82	85	49	73	58	97	66	79
GATAGGTTCTTATGCA	ref_5715_new	77	31	76	69	47	50	44	54	47	63
ATGATTTTTGAAGCAC	ref_5715_new	58	38	64	57	43	62	34	51	35	39
GATGGGGCCTTCAAAG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TAGTTTCGAGTGTTTT	ref_5715_new	1	0	2	1	1	0	0	2	1	1
TCCTTTTAATAGGCGC	ref_5715_new	93	53	89	93	55	82	58	84	66	86
TGCCAGGACTTTTACA	ref_5715_new	27	22	31	28	23	26	15	25	22	32
GTCGACTGTATCGATT	ref_5715_new	54	60	46	33	67	31	62	48	85	40
AGTTACGTCGTACATC	ref_5715_new	35	28	49	42	33	31	31	30	35	43
ATGATAGGCCTTATAT	ref_5715_new	36	14	43	36	16	22	21	25	32	31
GTACCACATGATTTCA	ref_5715_new	0	0	0	0	0	0	0	0	0	0
AGGAATTGTATGCGGC	ref_5715_new	37	17	19	41	12	31	16	28	16	19
ACGAGGAATACGGAAG	ref_5715_new	19	9	21	26	13	21	9	21	20	19
TCATGACCTTCGCATG	ref_5715_new	3	1	5	9	4	8	2	5	1	6
ATTGCCCACAGTTTAA	ref_5715_new	39	30	39	33	20	28	35	38	30	33
GTTAGCTGAACATCCA	ref_5715_new	17	10	37	17	19	18	16	24	15	22
AACCCTCATGTGGGGT	ref_5715_new	18	14	8	20	10	15	9	12	6	18
ATATCCCGTGGGACGC	ref_5715_new	59	48	88	67	54	59	43	59	46	59
ATTTAAACTGAATTGC	ref_5715_new	43	37	68	48	31	33	37	51	35	32
CGTTGACGAATTTTCA	ref_5715_new	39	26	45	53	26	44	44	45	38	52
GTCTGCATCTGCATCG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
CTGCTTCTTGAGTACC	ref_5715_new	221	174	279	265	190	240	174	244	158	222
AACTCATATTTCCTTC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GGTAGCCACTTACGGT	ref_5715_new	169	127	172	168	136	150	131	157	138	134
AGCGTTTTCCCAGCAA	alt_5715_new	14	7	14	15	10	9	6	15	8	13
TTGTTACCGTCATCTC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
ATTACTCGTTAGCACC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TTTTATCTTAGATTAG	ref_5715_new	372	209	463	386	223	384	211	356	246	341
TTGGATCGTACGATGT	ref_5715_new	22	9	22	23	9	13	18	18	12	16
ATTACGTGGCCTTTTT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GTTTATTTCTACTCTT	ref_5715_new	18	10	34	27	11	19	13	25	17	27
CTAGGCTTTACAGTTT	ref_5715_new	47	71	94	80	81	67	71	64	55	56
TGCTGTTGCGTTTTAT	ref_5715_new	42	38	79	55	33	58	32	41	42	63
TCAATAAGATTGGTTA	ref_5715_new	0	0	0	0	0	0	0	0	0	0
CCACCGGCCACATGAT	ref_5715_new	25	23	19	26	15	23	24	16	25	24
CAAGCTTGTCTATTCG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GGATGCATATCATATC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GGTGCGTCAAAGTGGC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GTTCATGTAGATCTAT	ref_5715_new	107	68	122	86	69	110	78	79	96	92
ACTTCTAGACCTTTTG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
ACCGCCTGATGTAAGC	ref_5715_new	71	45	91	86	34	66	58	80	45	73
CCGGTAATGCTCGAAA	ref_5715_new	28	10	30	28	15	25	17	27	23	21
CGATCAATATTACGCG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
CACCTTTTAGGCAGAG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TAGTGTCCCTAATCCG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TGCGATATCTAACAGT	ref_5715_new	81	67	101	111	68	104	80	82	64	93
AGCATCGCAAGCGACT	ref_5715_new	13	16	31	15	12	20	7	26	20	17
CTCCGTTAACTTCGTC	ref_5715_new	81	58	110	82	58	78	63	81	73	84
TACAAACTTGTCGAAA	ref_5715_new	168	124	226	186	95	146	114	173	92	139
CTCATCTTACGTTAAA	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TGTATTATTCGAGCCT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
ATTGCCTTGAGTTCCG	ref_5715_new	69	59	80	69	61	64	38	61	50	59
ATTCTGCAAGGGTCGT	ref_5715_new	18	14	22	19	14	12	4	12	17	11
GTGGTGGCATCTAGAA	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TCTTCACTGAACCGCT	ref_5715_new	76	41	87	67	43	87	51	84	42	58
GGTATTGTTTCGTGCC	ref_5715_new	83	43	93	81	55	69	56	92	72	64
CTTTATCATAGGGTTG	ref_5715_new	45	47	83	62	39	44	45	54	43	54
TTCACAGCCTGCATAG	ref_5715_new	48	31	38	41	22	31	23	26	27	27
CACAACTCTGCTGTTG	ref_5715_new	41	40	64	64	47	37	44	63	58	56
CTTTACGACACTACTA	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TTTTTGGGAGACTATC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
GTTCCATTCCATCATT	ref_5715_new	67	40	82	64	33	74	38	67	52	49
AACCCCGTTCCATGTT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
AGTCACGTTATCTTTG	ref_5715_new	15	8	27	20	17	17	21	15	15	23
AAAAACGATTTATTCG	ref_5715_new	0	0	0	0	0	0	0	0	0	0
CTTTCGCAGTAGTATA	ref_5715_new	18	18	22	28	20	18	19	27	23	14
CTTCTTATTTTCTGTT	ref_5715_new	183	99	233	164	98	159	85	181	105	158
GCACCAACAAGGTGCA	ref_5715_new	72	35	82	58	33	66	40	58	41	57
CTCTCACAACCAAGCC	ref_5715_new	89	54	109	91	69	75	60	84	59	71
TTCCCCAGTCACCGCT	ref_5715_new	27	5	24	17	19	14	14	21	12	10
GGCGATTTTTTATCTC	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TTGGCCAATAGATCCG	ref_5715_new	398	313	410	377	227	371	271	264	325	346
GCTGCCTTCATTCCAC	ref_5715_new	3	6	8	5	2	7	1	5	4	7
ATAGTTAGGCGAGCAT	ref_5715_new	38	20	54	53	33	44	23	48	46	39
ACCCCACTGATACGCT	ref_5715_new	49	47	86	73	31	67	55	61	49	53
CATTACTAATTCGATA	alt_5715_new	55	34	66	45	23	66	32	51	56	58
GCTTTGCCAATCCGTT	ref_5715_new	0	0	0	0	0	0	0	0	0	0
TTAAGGTGGCCTGATA	alt_5715_new	125	70	156	138	63	123	89	124	71	136
AGCTTACCCTCAGCAT	ref_5715_new	19	9	15	11	15	16	12	7	6	7
TGCCAATGTATGAGGT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
ACTTTAAGGAAAACGA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
GTGTGGGATATTAGGC	alt_1709_RC	0	0	0	0	0	0	1	0	0	0
ACGTCTCGGTAACCCG	alt_1709_RC	16	20	15	14	22	14	12	14	17	17
GTCTTCAGACTGCGTC	alt_1709_RC	17	16	18	24	30	25	31	12	22	22
CGACGTTTTGCATGTA	alt_1709_RC	51	61	59	57	52	32	63	42	71	52
TGACCCTTCTCCCGTC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
TCGTGGCGTCTTTGAA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CATTCCCCGCACGTTA	alt_1709_RC	49	148	79	48	156	58	156	40	147	48
CTTATTGAACCCGCAA	alt_1709_RC	15	17	17	14	18	13	17	14	18	13
GTTAGTCTGAAGAGTA	alt_1709_RC	18	21	30	20	40	17	33	21	40	15
CGTATCTGTCTAAGAT	alt_1709_RC	17	30	35	23	50	21	26	14	43	16
TAACGCACTATTCGTC	alt_1709_RC	44	47	52	31	62	45	69	37	73	26
TTTTGACAGTACTGCT	alt_1709_RC	9	13	12	7	6	10	8	6	11	8
TTACTGTCTATCCCTG	alt_1709_RC	5	5	2	2	12	1	4	6	4	4
GCTGTCGCCAACTCTA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
AGTCAATCGCTGCACT	alt_1709_RC	1	2	0	0	1	1	3	0	2	2
TCCATCCCGGGGACAC	alt_1709_RC	9	9	8	9	11	2	9	9	8	7
AACTGTCTTCAGATCT	alt_1709_RC	15	8	14	7	17	3	14	10	16	15
TCCTAGTACCGATGGT	alt_1709_RC	25	33	26	21	34	28	27	19	17	13
ATTCTTCCTTGTAGTA	alt_1709_RC	27	34	37	29	36	28	30	37	43	31
TGACCAAGACGCGGTC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CTGGACGCCGGGGCAG	alt_1709_RC	57	79	55	43	73	45	79	37	79	40
GGTTTGTTGCGTACTG	alt_1709_RC	24	36	24	34	32	31	52	23	40	15
TCCCACTGGCGTTATC	alt_1709_RC	15	24	17	9	13	10	14	24	25	11
CTTAAGTCTCGCGCTC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTCCTAGCAATC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
TCGGCGCATCATGAGG	alt_1709_RC	83	87	76	67	86	63	106	62	120	63
CATTTATGGTGTGCGA	alt_1709_RC	29	23	36	42	34	30	36	30	46	30
GAGCGATCACGCTGCG	alt_1709_RC	23	21	25	19	27	30	23	21	26	23
TAGGGTTACCTAAATC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
GTCGGTGTGTCGCTCA	alt_1709_RC	6	13	19	8	15	8	17	8	12	11
TTCTTGGAGTTGGCCT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
ACTTTACCCCCACGGA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CAACGCCTCCACCCCG	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
TGTGGACGGCGTGTTC	alt_1709_RC	8	5	11	8	15	9	17	10	15	4
GTCAGAGTGATTACCG	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
GGCCACGTTAATGTAA	alt_1709_RC	3	5	2	3	2	1	9	2	4	3
ACGACGCAACGTACCT	alt_1709_RC	5	23	15	5	19	4	16	6	33	7
TCGCGTTCTGCTACCA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
ATCCTTTGACTGCGGT	alt_1709_RC	12	77	19	18	82	21	68	13	68	20
TCAGGCGAGATTGGGC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CGGGAATCTTAAATAG	alt_1709_RC	24	31	47	29	40	33	49	34	44	25
GCGATTTGGCGCGTCA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CCGAATCTTTGCCCTC	alt_1709_RC	6	22	2	4	22	2	14	5	30	6
GAATGTTATTATTGAA	alt_1709_RC	26	37	28	40	42	36	46	30	40	25
ATAGTCAGCTAGGCAC	alt_1709_RC	13	19	17	11	23	13	16	13	16	11
TGGTTTAAGAGCAGTT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
ACTAATACGGTCCGGC	alt_1709_RC	12	22	15	7	18	12	19	8	16	13
CCTTCTGTAGAGGTCT	alt_1709_RC	40	51	53	25	49	42	56	38	40	42
TGTCCGCTTTGGATGC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
GCAACCCGAGGGGAAG	alt_1709_RC	13	21	9	12	18	14	12	10	13	11
AGTTCCTGTGTCGTTT	alt_1709_RC	25	17	31	15	23	19	27	19	28	21
GGTTACGGTAGGTATT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
TGGACGCCCATTTAAC	alt_1709_RC	37	27	36	19	29	16	31	16	32	22
CCAACTTGGGTGCAAA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CTGATTGCGCTCTACA	alt_1709_RC	163	269	243	197	298	185	277	160	312	151
GCCCCCCGTACTTAAG	alt_1709_RC	52	126	55	65	146	49	136	50	177	38
AACGGCATTACACTTC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
ATCACTTCTTCTCCGA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CGATACGCGGACAGGT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CCCCAGAATCTCTGGG	alt_1709_RC	25	22	17	30	28	20	30	14	34	23
CAGTCTCGGATCTGTG	alt_1709_RC	0	1	3	3	1	1	3	0	9	1
GGCCATGTGCTCTTTG	alt_1709_RC	16	23	20	22	35	31	26	18	25	21
CTTCCCCATTTGTAGC	alt_1709_RC	0	2	1	0	3	0	4	0	1	2
TGGGTTTAATAGTGTA	alt_1709_RC	24	47	36	28	32	26	28	24	34	28
TCTTAACTCCCGCAGA	alt_1709_RC	197	452	207	175	451	140	440	157	479	148
GTTGAAATCCCAACCG	alt_1709_RC	68	65	63	61	76	72	102	43	109	64
TATTTGAGCGTTAATA	alt_1709_RC	34	51	61	38	40	42	59	35	82	47
CTGGCCTTATTGGGCT	alt_1709_RC	10	27	9	8	20	16	32	6	27	12
TGTACGAGACTGGATT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
GTTTCTGTCTGCACCT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CTGTGCAAATCACTCT	alt_1709_RC	18	10	23	18	14	16	23	11	22	5
GGATTTTTCTGGATAC	alt_1709_RC	23	29	22	26	41	32	38	25	33	26
TTACCTACGGGACAAT	alt_1709_RC	63	80	94	65	76	57	94	42	87	48
ATTTTGTGTCTTGGGC	alt_1709_RC	14	36	30	6	43	17	36	21	35	19
CTAGATTGCATGGTCA	alt_1709_RC	10	8	11	5	17	5	12	5	8	4
GTTCGGGTTTCCCCAC	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
CTCTCGTGGGATCCCT	alt_1709_RC	18	45	31	27	24	26	35	22	33	15
CCTATACTTTGTGACA	alt_1709_RC	43	66	44	31	59	49	77	34	69	43
ACGCTGTTACCGCGTC	alt_1709_RC	0	0	0	0	0	1	0	0	0	0
CTTACTAACATTCGCG	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
AGTGCGTATGATTAGC	alt_1709_RC	14	16	18	8	15	11	24	7	12	15
TCTGAGCCCTCTCAGA	alt_1709_RC	8	15	6	3	18	1	18	1	8	5
ACAATTCTTTGTGCCC	alt_1709_RC	36	45	55	36	50	28	45	42	66	40
GACTCATGGGGAGGGG	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
AGAGGATGGTCCTGGT	alt_1709_RC	217	323	253	205	284	212	289	220	324	202
AGTTCGCCTAAGCGCT	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
GCGGCGTAAGCAGATT	alt_1709_RC	25	20	16	7	21	17	22	15	12	11
TCCGTGCCTCCTCGTA	alt_1709_RC	0	0	0	0	0	0	0	0	0	0
TCAGTACGATTCTCCT	alt_1709_RC	30	35	28	18	35	22	29	24	38	24
GCTGGAGCTCACAAGT	alt_2169_RC	162	153	212	139	154	158	172	151	147	135
ACTGCCCGGTGCTTAT	alt_2169_RC	12	17	17	21	16	14	17	19	17	13
GAAGTGCACGTGTTAC	alt_2169_RC	34	21	39	28	16	32	26	14	27	13
CAGTGGTAGTGAAGGC	alt_2169_RC	26	28	35	30	34	26	42	29	27	26
GAGTACTCTAGAACAG	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CTGCCATGGCCATTAG	alt_2169_RC	10	8	12	11	8	12	9	11	7	17
TTGCAACATTTCCTTT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
GATGTAGCGTATACTT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CAGTCCGTCTGCTTGT	alt_2169_RC	11	11	11	14	26	14	14	13	15	10
TCATGTGGTATGCTTG	alt_2169_RC	26	37	28	29	46	26	35	27	31	33
GGGTAAATCGTTGCTA	alt_2169_RC	18	21	23	31	27	27	27	22	35	28
ACTAGGGCTGGTTTTC	alt_2169_RC	4	9	7	7	10	5	12	3	7	1
CGGATCTGGATAAGTT	alt_2169_RC	21	23	31	24	18	19	18	28	26	16
CAGACTTGAGTATCTT	alt_2169_RC	22	30	29	20	24	13	29	12	24	21
CCTTTCACACTCGCCA	alt_2169_RC	11	29	7	13	18	12	15	13	23	7
GAGATGGCCTGTGCTG	alt_2169_RC	34	78	45	41	61	40	71	52	62	39
ACGAGTGCTCTGCGCT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TATTTAATGCGCGTGG	alt_2169_RC	16	11	9	10	10	5	13	9	9	6
GCGGAGTGTACGTCCC	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
GATGTAGCGTATTCTT	alt_2169_RC	72	92	104	93	74	80	79	79	101	69
ATTCGTATACCCATTA	alt_2169_RC	34	37	59	46	37	39	44	34	51	28
TCGGGAAGCAAGTAAC	alt_2169_RC	72	95	105	99	90	84	88	77	105	83
TGGGTAATACTTGCTG	alt_2169_RC	42	28	48	26	44	44	36	26	32	40
ATAGTCCCATATTCTG	alt_2169_RC	59	62	56	67	66	69	72	45	73	57
GCTGTCAAAGCTTATT	alt_2169_RC	1	19	8	6	9	3	17	4	14	6
TCTAACGCAATAATGG	alt_2169_RC	20	16	14	15	27	15	32	24	24	21
GCTGTTATCGCATAAA	alt_2169_RC	49	50	80	55	54	51	61	57	60	67
CCAGGCAACGTCCATT	alt_2169_RC	13	9	14	14	14	13	6	9	16	12
ATACATCCGGATGATT	alt_2169_RC	2	14	16	7	8	8	11	10	12	12
GTACCTCGCACAATCT	alt_2169_RC	8	14	15	9	31	12	17	8	14	6
TTGGGCCAAATACCAC	alt_2169_RC	21	26	23	24	19	24	17	19	18	18
AATGTCATATCTTTAG	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CATCTTTTAAAAGCCA	alt_2169_RC	8	14	6	10	9	3	5	6	9	6
CTCGATGTGGTTCTGA	alt_2169_RC	6	21	14	19	10	11	12	11	14	7
ATTCCCTATCAAGTGA	alt_2169_RC	15	25	29	23	29	34	31	10	30	30
TTTCTGGCCTCTCCAA	alt_2169_RC	67	71	90	86	90	79	69	78	87	51
AAGATATTTAAGTAGG	alt_2169_RC	30	55	47	34	57	48	57	39	41	37
GTTCGCCGGCCTACAA	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
ACATATAGGCTTGGCT	alt_2169_RC	23	21	32	23	26	26	17	28	30	22
ACATTAGAACAAATTT	alt_2169_RC	51	67	69	47	86	56	76	44	66	33
GACTTGCCGCTGTTGA	alt_2169_RC	40	38	39	40	30	20	49	41	41	35
AGACGATTTCAGATAT	alt_2169_RC	37	50	67	49	39	40	47	51	49	37
TCTTCGGTAGTGGTCT	alt_2169_RC	3	3	4	5	10	3	4	0	2	2
CGTTAATCGAGGTGGC	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CCGTAGGTAGGCTCTT	alt_2169_RC	8	15	18	11	15	13	7	10	8	8
TGCTGACAATTTTAAA	alt_2169_RC	211	271	228	190	328	175	299	183	291	189
CTATGGTGATCGCGTT	alt_2169_RC	28	35	29	32	34	23	40	36	36	19
CGACGAATATGTCATA	alt_2169_RC	32	26	41	31	39	13	38	21	47	32
TGTATTTGATTTCGTA	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TCCCCGCGATACAACT	alt_2169_RC	19	67	17	19	48	22	41	15	46	10
TTTAGTTGAAGCCCCA	alt_2169_RC	8	8	8	9	4	1	6	6	9	5
GGACTCCGGTCGGAAC	alt_2169_RC	5	2	8	17	22	10	11	10	10	6
CGGATAACCTGTTACG	alt_2169_RC	16	16	24	19	20	15	16	17	29	12
GGGATTCGGGACGTCG	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TTGCAACATCTCCAGA	alt_2169_RC	30	45	47	30	45	34	41	35	40	28
CTGGGTGTGACTTTGA	alt_2169_RC	33	66	42	46	50	43	46	47	55	51
GGATTTGAGCTATGCC	alt_2169_RC	59	90	92	71	89	59	80	73	101	71
ATGTGTGAAACCTCTG	alt_2169_RC	10	13	19	20	14	11	14	7	15	9
GGTGTTGCCTAGTCCG	alt_2169_RC	78	88	105	95	91	75	93	78	97	65
GCAAACTAATGATGCT	alt_2169_RC	10	15	12	14	13	16	10	12	10	9
AAGCGTCTGCCTGGGT	alt_2169_RC	45	53	53	48	44	46	60	49	49	36
ACGTTTTCTAGAAACT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TTGTCCCCAAGGAAAG	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CATCGACCGAAGCTGT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
AACGTCTAATCTTTTA	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TACCCTGGTACTAGAC	alt_2169_RC	42	48	47	37	47	24	49	37	49	32
CTTCAATAGCGACAAC	alt_2169_RC	88	78	106	94	82	76	94	78	80	66
GATATCCTCGCCTTCG	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TAGATCCCTATAGGTT	ref_2169_RC	10	9	10	13	9	6	11	8	14	5
TCCTGACGGCACGCCT	alt_2169_RC	34	46	42	41	39	33	38	28	47	26
TCCAAGAGTGTACTTC	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CTCAGACTACTTATTT	alt_2169_RC	29	24	34	20	26	37	25	34	40	22
TATCTTCCGATCTGGT	alt_2169_RC	52	37	60	41	45	56	57	48	36	34
ATCATCGATGTGCTTG	alt_2169_RC	13	7	14	14	18	3	23	11	16	15
ACCGTTGCGACTGTTT	alt_2169_RC	0	2	0	1	3	0	2	0	4	0
TCTACCCAATCAGTCT	alt_2169_RC	24	56	46	35	51	38	54	34	38	23
TCGCTCGGATTTAGTT	alt_2169_RC	23	23	23	20	18	26	24	24	17	23
TAGGACTCTAGGTCGT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CCCCGAACAGTCTTTT	alt_2169_RC	3	4	8	13	8	3	5	4	8	3
TTTAAGGATACCGCGG	alt_2169_RC	1	2	0	1	0	0	2	0	1	2
ATGGCTTTGTAATTGT	alt_2169_RC	10	10	18	18	19	11	6	8	14	11
GGGCTTAGATAAAACC	alt_2169_RC	8	5	9	4	7	3	4	7	4	3
TCACGCCTAGCCGCTT	alt_2169_RC	66	70	100	98	82	85	85	87	96	83
GGATAGGCCGTTCTCT	alt_2169_RC	31	28	35	42	22	29	32	25	35	27
CTGCGGCTATGTTCAC	alt_2169_RC	57	71	61	82	68	53	76	49	104	71
CTATCGATGAAACAGG	alt_2169_RC	32	41	41	39	40	36	48	32	39	24
GTGATTTAGGGTCTGC	alt_2169_RC	48	62	75	54	68	51	65	55	73	60
CCTCCTACTGTACAGG	alt_2169_RC	9	9	14	7	12	15	15	5	9	10
AACTTTTTGCGAGGTT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
GGGTCCTGATCAGCAT	alt_2169_RC	60	60	84	64	76	69	65	65	63	76
TTGGATTTGTTTTGGT	alt_2169_RC	53	56	59	43	57	52	58	42	57	39
CTGAAAATGCATCGCA	alt_2169_RC	135	159	195	173	177	142	205	137	214	145
ACCAATGTCCGTCTAT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
GAACACCCCACATAAT	alt_2169_RC	46	29	37	58	26	37	33	50	50	40
GCTGAGTTGTGAAGCT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
GTTAGTATAGTCTAAG	alt_2169_RC	14	10	9	5	4	11	4	5	4	1
ATCTCAATCGTTCGGT	alt_2169_RC	4	2	10	5	8	5	12	4	4	3
CTTGATCCCAGAGTGA	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TAGCTATACGTTCAGC	ref_2169_RC	14	17	19	13	17	12	8	15	16	16
TCAGTATTGTTTGTTC	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
GCTACGTACCTCCCGT	alt_2169_RC	6	18	5	4	31	1	20	6	31	0
GGTCCAGCAGACCTGT	alt_2169_RC	34	39	24	30	42	31	51	30	33	20
GGATCGTGCGTTCGTT	alt_2169_RC	42	53	46	34	51	51	49	33	47	40
TATTCTTGGGTTGCCC	alt_2169_RC	5	17	15	7	7	8	9	4	9	12
GGGCTTTGTATGTTCC	alt_2169_RC	42	34	42	32	45	39	37	39	48	32
GTTCTTTCGACTAGAG	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
AGCCTTGCTCTAAGGG	alt_2169_RC	9	14	9	15	13	7	13	16	7	3
CGCCGATGCCTCCCCA	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CTCGGGCATACCCATC	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CAGATAGCTCGTTATG	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TGAGAAGCGTTTTGGG	alt_2169_RC	11	16	26	15	22	20	15	16	17	17
GTATAGACTGGTCGTT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TATGTTAATAAAGGCG	alt_2169_RC	53	41	61	57	56	67	43	70	52	36
AACCAAATTTCTCAAT	alt_2169_RC	2	8	2	2	5	2	4	8	3	1
GGCTCTCTCGCAAGTA	alt_2169_RC	0	1	1	3	1	1	4	0	5	2
CCAAGCGTCTTGTAGT	alt_2169_RC	26	51	40	26	50	21	58	33	79	29
CCTGTTCAGTTGAGGC	alt_2169_RC	25	38	23	21	26	16	26	24	34	29
TCCCCGGGTTCTAGAA	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
ATATCCAGTTACCTTT	alt_2169_RC	8	9	9	9	24	14	11	9	13	6
CCATGTTTCTTTCGAC	alt_2169_RC	9	10	16	6	5	5	16	13	23	6
TCACGTTACAGGATTG	alt_2169_RC	7	4	2	3	4	7	4	8	1	4
ATCGTCATTCGCTGGG	alt_2169_RC	35	31	54	60	31	45	41	46	46	32
AGTATCACGTGCGTTA	alt_2169_RC	9	7	13	14	8	11	8	10	14	7
CTCCAGCCCCCGATTT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TTCATCGACTGGTTGA	alt_2169_RC	14	16	17	14	30	13	23	22	22	19
ATGGACAACTGCCTAG	ref_2169_RC	3	0	0	1	3	0	8	3	2	0
TTTCGCTAAGAGGTTT	alt_2169_RC	36	40	41	41	21	41	38	31	43	21
AGGGTGCCTGCCACTT	alt_2169_RC	38	36	39	32	29	28	23	21	33	22
GTTAGACTTTGGTCTG	alt_2169_RC	8	1	1	6	3	2	3	4	6	11
TTATTTTAGCATAGAA	alt_2169_RC	12	24	28	24	44	23	28	18	26	24
TATCCAGGCAATTAAC	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
TGGTTCTGCCTCGTTT	alt_2169_RC	18	17	19	14	22	25	16	11	14	19
AGTAACCGATGTAGTT	alt_2169_RC	15	6	14	12	6	16	12	12	12	15
CTGATCTAGAACAGTT	alt_2169_RC	0	0	0	0	0	0	0	0	0	0
CTGGGCTTTCCTTATT	alt_2169_RC	2	9	12	8	14	10	9	8	6	8
GGCGAGTTTGCACTGG	alt_2169_RC	20	18	11	15	20	19	22	13	33	13
ATCACCGTACTCTTTG	alt_2169_RC	36	28	29	31	31	26	40	21	32	40
CGTCCTATTTTTCGAT	alt_2169_RC	9	11	11	10	9	2	6	8	9	5
CTCCTTTTGATACTCG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
AACGAATCTGCCCCTT	ref_5935_new	16	10	22	25	17	27	18	21	21	14
AATTGCGTTTTAGGAC	ref_5935_new	0	0	0	0	0	0	0	0	0	0
TCGATTTCGACTCCTC	ref_5935_new	138	88	158	161	84	111	100	102	102	135
TCGGCTAGCGATAGTC	ref_5935_new	19	13	33	24	15	34	19	19	31	16
CTGCAACTTATTATTC	ref_5935_new	53	18	39	38	21	40	30	32	23	36
AATCGCTCTGCGCCGC	ref_5935_new	0	0	0	0	0	0	0	0	0	0
TTAATCCTCTCCTCTG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
CTGAATGAGGAGCGCG	ref_5935_new	32	16	59	60	33	30	30	29	33	31
CTATTGGGGTATTTGA	ref_5935_new	12	6	14	16	8	12	13	14	6	4
GATTTGTTTTTTTCCC	ref_5935_new	61	24	49	53	15	37	33	37	18	47
GCAATTCCGCGCACTA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
GCATCCCTCAAGGACC	ref_5935_new	52	39	65	72	45	55	36	53	41	46
TTTGTGGCGATAAAGA	ref_5935_new	78	49	92	75	61	77	45	69	36	49
TTTTGTCTCTAGGTGT	ref_5935_new	34	20	29	31	14	37	20	29	14	22
CACAAGAAACGTGGTT	ref_5935_new	50	28	44	55	36	41	40	43	28	45
GATGGACGGCACACTC	ref_5935_new	8	9	8	11	16	6	10	5	16	6
GTGCCCCCCGGTTTGG	ref_5935_new	75	57	86	94	55	77	64	85	80	67
TTAGTGCATCATTCGC	ref_5935_new	68	29	62	61	37	61	29	40	35	47
TCATAAAAGTCAATTG	ref_5935_new	53	31	73	62	39	39	43	46	44	58
TCGCCGTCCGCGATAC	ref_5935_new	18	5	15	8	6	13	12	7	8	21
CCTCATTACGTTGGTC	ref_5935_new	0	0	0	0	0	0	0	0	0	0
TTCTGTTCCGAGGTCG	ref_5935_new	133	65	149	132	95	134	92	117	72	107
ACGTTTACATAACATG	ref_5935_new	4	2	6	6	2	1	10	2	1	8
CTTCTAAGGGCCTCCC	ref_5935_new	91	63	98	66	58	82	51	71	57	83
GGATGCCATTCGAGGG	ref_5935_new	2	0	0	1	3	2	1	3	3	4
TTCCACGGACATGTCA	ref_5935_new	86	72	102	78	62	71	61	84	49	65
CTTCCATGTCTTCTTG	ref_5935_new	40	26	55	45	19	43	32	63	22	33
TCCTTAACCTGGGTCC	ref_5935_new	170	111	194	160	111	146	121	174	136	165
CTACATCGCGGATGCG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
AGCCATTATTTTCGGA	ref_5935_new	51	19	52	47	25	45	29	43	17	44
TTGTGGTGAAGAGCGA	ref_5935_new	57	39	65	52	22	46	32	49	37	40
TGCCTCTACTATAATT	ref_5935_new	70	41	67	73	50	57	40	56	35	65
TAAGCTTTGGACGTTT	ref_5935_new	65	46	72	86	36	79	47	55	48	64
CGCGTGGCTACACGGT	ref_5935_new	37	11	26	26	14	22	10	42	17	22
TTTTCCAGGATATTCT	ref_5935_new	133	77	171	168	79	129	73	100	74	126
CATTATTTCGACATAA	ref_5935_new	6	9	14	15	11	9	6	12	4	6
GATGTATGCAACCGGC	ref_5935_new	413	255	496	437	270	410	251	413	286	350
ATGGCTATACGTGTTC	ref_5935_new	5	3	8	8	3	5	4	2	3	5
AGGATACTCGCTAATG	ref_5935_new	141	77	156	123	79	137	93	104	83	138
CTGGTATTTCAGTAAT	ref_5935_new	78	68	115	89	71	69	71	99	45	74
AATCAGTGGCATGAAC	ref_5935_new	21	18	28	24	13	17	24	21	11	17
GCGTTAATGTATACAA	ref_5935_new	45	45	74	48	20	48	28	47	40	42
TGGTTGCTTTGTGGCA	ref_5935_new	123	83	121	125	87	113	68	101	72	90
ATAATGTTTTTCCTTT	ref_5935_new	41	20	66	51	23	57	29	48	31	46
CTCGTTGTTAATATCT	ref_5935_new	0	0	0	0	0	0	0	0	0	0
GGAAGATTCAAGTGAA	ref_5935_new	20	11	29	14	10	14	12	29	9	21
CGAGTCCGTATCCGCG	ref_5935_new	22	11	15	20	8	6	15	19	16	17
CATTTGTTAACTAGGC	ref_5935_new	112	70	135	130	74	117	86	88	101	111
TAATTCCGTCTCAGGC	ref_5935_new	40	23	54	22	16	31	14	35	38	18
GACATGTCTCGCATAT	ref_5935_new	77	30	98	93	38	70	35	83	44	85
GACCGCTGCTCCTTCG	ref_5935_new	37	19	38	32	28	31	30	25	22	30
CGTCTCGTCTCTGCTA	ref_5935_new	24	19	18	16	14	13	11	16	13	18
TTGTCAAGGGATTTGG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
CTCTCAAGTGTAGGCC	ref_5935_new	37	18	31	29	12	35	31	38	18	33
GCTGTAGGAACGTTCA	ref_5935_new	18	9	18	14	10	20	14	14	16	14
TTTGAAATGGTTCGTT	ref_5935_new	4	4	19	10	6	10	6	13	4	15
GTCCATAAGATGCAAT	ref_5935_new	96	60	93	82	61	64	53	81	65	77
TGGTGTTTTCTGCAAA	ref_5935_new	98	55	111	82	54	79	67	73	50	73
GTCGTCTAGCTTTGTT	ref_5935_new	22	8	27	31	15	18	22	16	23	26
GGGGCCCAAGCGTGTT	ref_5935_new	101	77	124	115	73	113	75	101	105	105
TTCCGCTCTCCGTTCC	ref_5935_new	4	7	8	4	4	7	0	5	2	3
GACGTAATTTTGGGAT	ref_5935_new	43	18	45	62	18	48	25	34	26	40
CTGCGGCCCTAAGCCA	alt_5935_new	10	9	10	4	7	9	2	3	12	9
AACTGTTTACTATGTC	ref_5935_new	0	0	0	0	0	0	0	0	0	0
ACACACTAGCCATCAC	alt_5935_new	151	112	217	163	141	144	112	148	126	136
TCCACGTAAACTAGTG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
TCCTCGGTAGCGGTCC	ref_5935_new	12	11	10	22	14	21	17	16	14	22
ACTGGGTGGTGAGAAT	ref_5935_new	0	0	0	0	0	0	0	0	0	0
TAACCATGTTGTACAG	ref_5935_new	2	0	1	2	2	0	2	1	1	4
ATGCTTCATTGTTCAA	ref_5935_new	10	2	18	16	7	9	7	6	6	9
TACTTTCAGCACTATT	ref_5935_new	13	11	22	9	8	7	4	14	11	11
GTATTTAGCCTTTCCT	alt_5935_new	408	267	458	412	221	392	266	346	285	359
CATTGAGGCATGGAGG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
CGGGATGTAACGTTCT	ref_5935_new	16	13	23	11	10	26	12	12	11	13
TTCTATTCATGCTATG	ref_5935_new	57	45	57	75	51	50	64	48	44	45
ATCTACGTAGGCACTG	ref_5935_new	27	26	54	36	20	40	22	34	21	28
TGCCGGAGTTACCGTA	ref_5935_new	5	3	17	6	10	10	9	9	8	8
TCGTCACTGAACCGAA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
TACACTCCATATGTTA	ref_5935_new	12	18	10	6	24	12	22	18	33	11
AACTTATTCTTGGATA	alt_5935_new	159	57	181	162	57	187	60	172	57	152
TTTCGCCAAATTCGTG	ref_5935_new	46	36	76	53	37	71	32	43	38	52
GTAATGCTTATCCTCT	ref_5935_new	132	68	147	130	60	106	74	112	54	122
CTAGGCACCAATCCTC	ref_5935_new	19	14	25	29	13	21	14	21	22	21
GCCCATGCAACCCTCG	ref_5935_new	76	75	150	129	85	87	64	116	76	125
GGGGTGTACGTTCGTC	ref_5935_new	0	0	0	0	0	0	0	0	0	0
AACGCAGCTGAGAAGG	ref_5935_new	23	10	31	24	13	31	14	18	19	19
TAATCAGTGTTTTAGT	ref_5935_new	9	5	13	5	4	8	9	13	11	11
TCATTCGAAGAACCTA	alt_5935_new	43	25	57	63	28	46	37	44	29	34
TATTTCCTGATTATTT	ref_5935_new	0	0	0	0	0	0	0	0	0	0
ACAACACCGTGATTTC	ref_5935_new	49	36	71	49	33	29	18	38	22	50
CGTTTTGGAAAGGCTA	ref_5935_new	113	75	130	153	94	114	115	127	108	111
TCCTGGGAACGTTATC	ref_5935_new	102	62	89	102	72	65	61	68	66	83
CGAGTTCTTCTCGGTT	ref_5935_new	81	81	92	81	80	76	72	84	73	79
GGCCTTCACTGAGAGA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
GATTTTGTTCATTTAC	ref_5935_new	313	193	406	338	185	308	181	290	210	296
GCCGGCGTTACGGGCA	alt_5935_new	210	133	229	208	136	214	138	196	114	163
CATGTGTTGCGAGACA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
GCACGGCCAATGTCGT	ref_5935_new	13	3	12	11	7	10	2	9	14	20
GTCAGTCGTGAGCAGT	ref_5935_new	0	0	0	0	0	0	0	0	0	0
CGCACGTTTGAAATTG	ref_5935_new	50	25	42	47	35	24	29	42	23	29
TAAGCCAAATGTGCGC	ref_5935_new	4	19	28	6	15	14	8	15	9	14
CATCGCGTCTCCTCGT	ref_5935_new	0	0	0	0	0	0	0	0	0	0
GCAACTCTATCTTAAT	ref_5935_new	91	55	101	88	63	99	65	77	55	95
CCTTTTAGGCCTTGTG	ref_5935_new	13	11	23	9	13	14	13	22	12	16
ATAAGGTTTAACCACG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
AAATTGTTTCGTAAAA	ref_5935_new	151	105	193	163	91	143	111	156	93	154
CGAGACCACTTCTGTT	ref_5935_new	43	30	45	45	25	35	31	38	25	20
CACGCCGAACAATTAA	alt_5935_new	86	58	91	77	38	76	56	73	52	77
TAGAATGACTCGCCCT	alt_5935_new	142	108	179	165	108	141	107	163	94	145
TAGGTACAGATGCGGG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
CCCGGCAACAGTGAAT	ref_5935_new	27	21	46	39	27	32	22	40	22	42
TAGCAGTACTGTCTAT	ref_5935_new	89	64	118	108	77	72	72	85	77	85
CATTTGGTCCACTCTT	ref_5935_new	89	59	80	84	68	69	81	81	69	96
ACATGTATGTCAGAAA	ref_5935_new	10	6	10	13	8	12	9	19	12	13
AACCGCTTTGCACTTA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
TGCGGATTACCAAATC	ref_5935_new	45	22	50	47	19	43	33	50	25	42
CTCGTTTCGACCCTTT	ref_5935_new	82	49	77	81	46	64	58	70	49	70
TACCGTGGATCCGTAT	ref_5935_new	307	151	343	288	185	245	190	307	167	242
AGTTATATTTAATCTC	ref_5935_new	20	10	29	34	13	29	13	12	7	14
CTTAGTTGTCTTATCA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
GTTAATTCGGTTGCTG	ref_5935_new	129	82	159	130	73	97	81	115	88	113
GGATGCATGCATTATG	ref_5935_new	29	7	28	25	10	22	17	17	14	20
GCACTGGCCTAGCTTA	ref_5935_new	131	98	169	149	106	129	109	136	97	113
TGTGGTAGAACTTCGA	ref_5935_new	103	58	143	112	56	94	51	116	85	92
GCGCTTTTTTCCAATA	ref_5935_new	63	41	65	63	26	55	74	46	58	50
GTTACATATGCTTTCT	ref_5935_new	65	36	70	67	49	74	30	60	24	60
GATTTAGGCTGGGCGA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
CCGGTTTGGATTCTTT	ref_5935_new	0	0	0	0	0	0	0	0	0	0
ACGGGATTCTTCGTAG	ref_5935_new	27	18	27	34	12	21	18	32	12	26
TTGCGGAGACATAAAG	ref_5935_new	14	10	20	16	12	20	11	21	17	13
AACAAGGATTTGGTGC	ref_5935_new	13	17	18	10	10	13	10	18	7	16
GCTGTTCGATGATCGC	ref_5935_new	98	64	141	87	72	83	55	102	74	87
GCCTTTGCCTTCCTGG	ref_5935_new	0	0	0	0	0	0	0	0	0	0
CATGGTCCGGCGTCGT	ref_5935_new	47	28	65	40	24	46	31	36	26	37
ATGACAATCGGCTTCG	ref_5935_new	42	27	57	39	17	38	32	40	25	48
GCATCTGTCGCGGAAC	ref_5935_new	27	22	40	38	23	31	17	32	34	28
GATACTAAACCAGCTA	ref_5935_new	167	100	208	175	121	165	97	161	137	147
GACGTAGGTAAGAGAT	ref_5935_new	10	37	18	21	29	12	20	21	28	11
GGTAGTTTGGTGTGCG	ref_5935_new	19	12	20	19	15	14	12	14	10	13
GTGAGTTGTCTTCTCA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
ATCGCGTAAGGTCTCT	ref_5935_new	123	63	146	113	74	115	97	137	92	114
CTAGTCGTTAATAATA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
ATCAGGCTATCGGGCG	ref_5935_new	5	7	13	12	5	15	8	14	5	12
AATTCTTTAATGCCTA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
AAAGTCCGGAGGTCGC	ref_5935_new	37	36	71	59	27	44	30	45	52	41
TGGAGTTCTCCCTGGA	ref_5935_new	10	6	10	8	8	9	3	15	11	12
TATATCGGCTATGTGA	ref_5935_new	0	0	0	0	0	0	0	0	0	0
GGCATTTCGTTCGATT	ref_5935_new	20	9	19	20	10	14	7	15	14	13
CATCGGAATGTGGAGA	ref_2950_fdr	129	124	143	121	108	126	103	125	126	113
TGCCTTGTAACGCGGT	alt_2950_fdr	116	133	172	122	143	99	142	150	135	113
TCCTGGTCGACTTGAA	ref_2950_fdr	6	15	6	6	13	5	30	8	15	11
ATATCGTCTGTCCGTC	ref_2950_fdr	99	91	114	88	118	90	107	89	113	89
ATCGTGTCAAGATAAC	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGATAACAGGTCC	ref_2950_fdr	179	181	210	186	167	152	187	169	215	161
CATGCGTTTCTGGCGT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CATTGGATGATAGCGT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TAACGATTCCTGTCCT	ref_2950_fdr	18	16	16	26	13	13	22	16	22	20
TGGCTATATGTTTTAG	ref_2950_fdr	25	25	30	24	31	23	28	32	23	14
ACGTACATTCGGTCCA	ref_2950_fdr	3	5	1	7	3	1	6	4	5	2
TTATGCGTATAAATGT	ref_2950_fdr	3	5	8	12	8	6	10	9	12	5
CCTGAGATAAGCCATT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CAACGTGCCTGTTCGG	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCCCCGTGCTTGT	ref_2950_fdr	22	21	37	30	34	26	35	23	31	26
GGTCACGTACACCTCG	ref_2950_fdr	11	10	8	11	14	17	14	11	14	9
CTATACATACGGGCAT	ref_2950_fdr	34	51	30	26	37	31	35	29	42	27
CGGGAGACTCTCGTTA	ref_2950_fdr	32	20	34	31	34	30	47	20	22	21
CCGTTTATGCTCGTGC	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
AGATCCTTCGCGCCTC	ref_2950_fdr	3	2	10	5	6	6	4	3	5	3
ATTTGTATGTGTCAAG	ref_2950_fdr	26	29	27	16	19	22	19	15	24	11
GAAATCGTTGGTTATA	ref_2950_fdr	47	52	63	65	53	56	48	69	82	48
CCTGAGAATACGTGCC	ref_2950_fdr	17	8	8	6	8	3	9	5	11	5
GCCGGCCGCCAGGAGC	ref_2950_fdr	15	20	9	11	11	11	14	18	16	12
AAACCCGGGGGGCGTG	ref_2950_fdr	32	38	34	31	51	27	50	28	51	24
AAGTCACCGGCGTTTG	ref_2950_fdr	29	17	23	21	22	21	32	18	22	16
TTAACCTCACTATCTA	ref_2950_fdr	163	164	178	174	162	160	166	111	185	128
AAAGGTTCTGTTCTGA	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGATCTTATATCA	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CCTACTGGACCGCTAT	ref_2950_fdr	44	55	50	59	76	33	52	50	69	57
TTGAACTTGTGCAGCG	ref_2950_fdr	22	26	19	17	23	18	25	20	23	26
GCATCTCGTTGGCTCT	ref_2950_fdr	2	2	2	5	1	3	1	2	3	1
TTAGAATTTATGTAAG	ref_2950_fdr	8	20	12	16	14	14	15	12	17	11
AGCCAGGCACTTTTCC	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTATGCAAGCAAACTA	ref_2950_fdr	33	40	52	38	38	41	51	40	44	29
AGTATCGATCCATAAA	ref_2950_fdr	69	59	68	56	62	67	59	61	60	60
TTTTCAAGTCTTTGCA	ref_2950_fdr	33	48	44	38	37	32	46	41	43	20
GACTTTTCCCACACTT	ref_2950_fdr	153	211	186	161	206	141	176	156	226	150
CAAGATAATGTATAGT	ref_2950_fdr	20	16	22	11	11	21	11	7	18	21
GTATATTACATAACCG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGTAAGTGATTCG	ref_2950_fdr	25	15	22	19	24	28	18	21	19	14
GCACAACATGCCAACG	ref_2950_fdr	29	19	26	20	25	25	27	21	22	13
CGATACATGTCCCTAT	ref_2950_fdr	1	0	3	1	2	4	1	2	3	5
GGCAGCTCTTCTGGAT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTCACGATTTTTA	ref_2950_fdr	25	38	44	38	30	22	28	40	31	22
AGGGGATGTCCAGCCG	ref_2950_fdr	23	34	40	24	26	30	22	29	20	26
CATCTTTTTGATATCT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTTGTAGAGGGTC	ref_2950_fdr	8	10	9	9	19	8	2	15	12	10
CTATTTTACTAAGCAC	ref_2950_fdr	84	116	109	94	101	75	110	81	135	74
ATTCTTAGCTTTAGCT	ref_2950_fdr	10	8	8	9	2	13	5	9	12	7
TCTAAAATGACCCATA	ref_2950_fdr	12	9	12	7	13	10	6	4	13	9
GAAATTTATCCTGGGC	ref_2950_fdr	18	22	23	18	15	25	19	14	16	20
GACGGCTACGGAATGG	ref_2950_fdr	49	38	32	33	29	33	34	29	28	17
TTACGTAAGGCCACGG	ref_2950_fdr	5	11	9	13	16	11	11	8	9	8
CATTCAGCGCATGGCC	ref_2950_fdr	36	39	47	60	37	58	32	41	44	40
AATTTTGCGTTTGACC	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TTACCCTTGTTGTACC	ref_2950_fdr	7	4	17	6	12	10	8	10	12	12
GTAGCTAAGTCCGAGG	ref_2950_fdr	2	10	3	5	7	1	6	7	9	11
CAGCCCCCTTTTTTAT	ref_2950_fdr	35	50	35	54	65	38	68	41	65	42
GGTGTTGCCATGCGAG	ref_2950_fdr	24	26	25	21	27	16	33	17	27	21
TTCATTGGGTTACGGA	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
GTATTACGATTACTCT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTATTCTTGGAT	ref_2950_fdr	3	4	11	4	7	8	10	8	2	6
CGTGTCGTTATCAAAC	ref_2950_fdr	115	117	152	137	118	101	130	105	125	104
GTGGCATCGTCCTAAA	alt_2950_fdr	34	28	53	30	25	29	33	28	26	29
CGCAATTTCCCAGGCG	ref_2950_fdr	25	18	35	32	14	18	26	16	22	25
GCTTAGAGTACAGGAG	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TCGTAGTGTTTTACGC	ref_2950_fdr	14	36	27	31	20	31	42	24	46	20
AAGCACGTCGTTTTCT	ref_2950_fdr	8	8	6	6	17	4	7	2	15	2
ATGGTCCTCGCACATT	ref_2950_fdr	28	35	39	26	35	25	30	42	31	29
TCCTTGACCAGTTGTT	ref_2950_fdr	46	74	73	51	82	42	80	48	70	50
ACCTTGAGGTTTTCAT	ref_2950_fdr	38	45	42	23	46	38	38	24	50	35
CGCTAAGGCGTTTTGA	ref_2950_fdr	35	43	57	41	39	28	50	41	59	30
CGGAGCCTACGCGAGG	ref_2950_fdr	30	36	51	35	36	27	28	38	38	25
CGTGAAAGTGGTGTAT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
ATCAGGGCGGCGACCT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TGTGAGTTTTACTAAG	ref_2950_fdr	10	13	12	10	8	8	10	9	13	6
GGCTCCATATGGGAGC	ref_2950_fdr	65	70	57	49	72	70	78	64	70	52
CCTGACGTACAGTTCG	ref_2950_fdr	2	8	6	7	1	2	5	4	2	2
TGCAACGCCCGTACCG	ref_2950_fdr	8	6	9	7	9	5	14	8	9	9
CGGTACAACGGCGCAT	ref_2950_fdr	11	16	9	15	18	7	21	7	10	9
CTCCACGAATGATAAC	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CGTAAGTATGTTTCGA	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCACGTTTACGTC	ref_2950_fdr	8	5	14	7	7	9	6	9	12	10
GCGCGTACAAAGTGAA	ref_2950_fdr	35	27	41	21	30	19	34	21	30	16
TCGCTTGCGCCGGTTT	ref_2950_fdr	37	48	36	39	30	47	36	37	36	24
CTGGTGAATATGTAAC	ref_2950_fdr	33	25	33	17	19	21	18	26	26	22
GTATCGATTTTCCGGC	ref_2950_fdr	22	16	32	22	32	13	23	18	29	25
AAACCATCTACCCCTA	ref_2950_fdr	44	61	74	39	48	34	35	38	51	24
ATCGTTTTTGCCATGT	ref_2950_fdr	0	3	2	2	1	0	0	0	1	1
TTCCGGTCGGTGCGTC	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTCATATACGCGG	ref_2950_fdr	57	72	81	54	62	70	87	48	78	54
CGAGCAACATAGAGTA	ref_2950_fdr	6	2	10	3	1	6	3	8	6	5
CGCCTGACCCTGGTAG	ref_2950_fdr	12	7	14	9	15	9	11	8	9	9
GTGTCATGGCGACTTT	ref_2950_fdr	38	18	28	39	27	38	24	27	25	29
TGATAAGGTTCGGGCT	ref_2950_fdr	36	30	42	34	43	35	30	33	38	35
CTCCTGTTCAGCCGTA	ref_2950_fdr	8	18	14	18	21	10	19	14	18	15
ACGCGAATTAGCCGCG	ref_2950_fdr	55	56	74	74	56	57	66	56	74	43
CGAAACACAGATTGAA	ref_2950_fdr	3	11	20	10	5	6	10	7	9	6
CAGTCCTAGCACGCCG	ref_2950_fdr	53	47	59	41	53	45	50	42	37	51
TGCGATTAATGTGAGA	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TACTGATTTTTGGCGC	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
AATAAGCTCTGATATA	ref_2950_fdr	56	48	51	46	70	60	45	47	39	38
GCGTAAGGGTTACTTT	ref_2950_fdr	2	2	1	4	0	1	1	1	1	2
ATCGTTTTTGCCATTT	ref_2950_fdr	43	25	74	67	26	49	39	57	29	35
CTCGCCTGTCTGCGTG	ref_2950_fdr	18	91	21	26	94	24	108	15	109	13
GCTTTTAAACTGGTAG	ref_2950_fdr	79	65	93	67	69	68	78	70	58	73
CGTCCTAGTCGCGCTA	ref_2950_fdr	29	32	37	26	49	36	43	38	61	26
CCCAATGGCTGAAGGT	ref_2950_fdr	17	28	40	30	22	25	28	26	34	17
GTCCTAAAGTTAATCT	ref_2950_fdr	15	11	23	22	13	16	25	14	20	24
TTTGCAATGTGTAACT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
AAAACCCTCGGCGTTC	ref_2950_fdr	106	122	142	118	135	89	121	110	129	93
TCCTCGCAAATATCTT	alt_2950_fdr	27	38	43	47	36	32	35	26	34	28
ATGTATTTCTTAGATT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCCATTCTCTGTA	ref_2950_fdr	20	31	20	15	18	24	22	10	16	15
GAGGGATCACTAGGGC	ref_2950_fdr	2	5	10	4	7	3	10	4	2	4
CACGTTAATCAGCACC	ref_2950_fdr	40	45	55	23	37	40	36	33	48	41
TTTTGTTTAAGTTGGG	ref_2950_fdr	12	9	16	12	10	10	16	12	22	8
GCCGTTCGCAAGTACA	ref_2950_fdr	75	72	71	80	82	70	79	62	87	68
TCATCGAGTCCTGAGC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTGTTAGTCCGGT	ref_2950_fdr	96	99	98	109	94	101	103	95	100	86
AGTCCCTTTTGGAAAA	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
TTATATATCAATTTAC	ref_2950_fdr	21	34	27	21	27	29	24	21	30	26
CTACGCCCGAACCTCT	ref_2950_fdr	75	109	74	85	87	59	93	76	78	76
GGGATTTTCTGTAGCT	ref_2950_fdr	289	242	386	267	294	277	290	276	292	267
CGTAATAACTTTGTGC	ref_2950_fdr	38	24	40	36	31	34	31	39	44	45
CGTTACTTGTCGCTAC	ref_2950_fdr	17	19	14	22	24	15	21	23	36	19
CAGTACTGTTAACTTA	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
GGGTACTGGTTACCGG	ref_2950_fdr	94	99	111	84	116	91	111	70	104	70
CATTATTTTCTGCAGT	ref_2950_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTACCAGTAAAC	ref_2950_fdr	5	4	4	3	6	2	2	6	4	5
TGGGAGTATTATGTCA	ref_2950_fdr	48	17	30	32	41	37	38	29	32	24
GTTTTCTGACAGCACA	ref_2950_fdr	35	35	40	30	55	29	35	52	52	30
AGGTCGATCGGAGGAC	ref_2950_fdr	4	10	6	5	6	5	3	5	6	6
TCGCTGATATCCGAGC	ref_2950_fdr	46	60	75	67	71	74	70	63	65	49
AGTTCTCATGCCGCCC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGTTGCGTGCTCA	ref_1587_upstream	124	48	154	107	56	94	64	103	73	84
ACGAAATCTTCTCAAA	ref_1587_upstream	71	36	77	69	33	53	31	71	29	38
TCTCAGGTTTATCGTC	ref_1587_upstream	9	7	15	7	7	17	5	16	6	7
TTATTTGGCCTTATTA	ref_1587_upstream	54	25	61	54	19	54	36	56	28	65
TAACACTCGTTGACCG	ref_1587_upstream	24	14	22	27	18	24	12	26	7	26
TGTATTCGCATACAAC	ref_1587_upstream	81	69	93	117	59	98	49	89	59	76
GCGGCAGCTAAGTTTT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTTTTTTCGTAG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GGGATTCCGCGTCGTT	ref_1587_upstream	13	11	18	22	11	23	9	21	10	15
CAATGTGGTGCTTGAC	ref_1587_upstream	41	22	39	44	23	35	17	42	38	42
CCCCTATGCGCTTTCC	ref_1587_upstream	66	32	69	73	32	47	40	57	32	52
CATAGAGGTGAGACAT	ref_1587_upstream	1041	508	1233	1107	512	1016	588	986	581	904
TAAACCATGCTGTTAT	ref_1587_upstream	438	265	562	539	265	457	263	453	248	401
TTAATCTTGCGGTTCG	ref_1587_upstream	158	73	198	178	63	129	67	147	85	122
ATTAGTAACTCCTCGC	ref_1587_upstream	2	8	3	2	11	2	16	1	6	3
TTAGTTCCGAGTTTCC	ref_1587_upstream	9	4	19	18	6	10	8	12	8	11
AATTGGCTCCATCAGT	ref_1587_upstream	70	41	103	80	50	80	38	83	66	63
AATTCAGCCTGTTCCG	ref_1587_upstream	130	75	162	147	107	101	100	122	78	108
TGTTCATAACAACTGA	ref_1587_upstream	44	17	56	50	27	41	32	46	43	54
TCTAAATGAGCAATGT	ref_1587_upstream	9	6	6	8	0	5	5	9	5	6
GATTAACAACAAGGGA	ref_1587_upstream	80	37	129	90	25	76	49	76	33	73
TGGCGAGCGCATACAT	ref_1587_upstream	10	4	12	9	7	14	6	7	6	9
TTCTTATCACAACGCT	ref_1587_upstream	80	55	101	85	55	86	52	76	65	68
TGGCTATTTGTCTATG	ref_1587_upstream	43	37	82	48	40	52	33	69	31	44
TTAGCTTGGGCAAAGA	ref_1587_upstream	37	30	61	55	26	37	33	35	27	40
CAAAATATCGTACGGT	ref_1587_upstream	185	96	219	189	84	128	98	166	103	142
CCCCTCGGGAAATATG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAGATCGTCAAGG	ref_1587_upstream	8	2	1	3	3	3	0	2	0	0
CGCCTTATACTGTATG	ref_1587_upstream	249	173	292	263	183	228	214	231	174	181
CCTCATTTTATAAAGG	ref_1587_upstream	73	50	78	79	58	57	53	83	62	50
TGTAATCGTGCAGAGC	ref_1587_upstream	24	18	24	18	16	19	18	23	13	17
CCGACTGCGCCGGCTA	ref_1587_upstream	17	7	13	18	12	12	8	10	11	14
ACCCCCATCTCGGCCC	ref_1587_upstream	34	17	34	20	12	28	12	24	11	28
TACACGGTTCTAAGAG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCCTCTTTCACTC	ref_1587_upstream	36	34	65	41	34	34	34	40	33	20
GTCTCAGGTTAAAAGC	ref_1587_upstream	54	34	75	69	32	46	33	58	37	51
GCACATACGTAGTCTG	ref_1587_upstream	270	152	375	339	216	292	196	288	170	262
TTTGTACCTCATAGAC	ref_1587_upstream	138	89	136	143	74	99	81	116	70	114
GAATGCTGTGGCCGTA	ref_1587_upstream	11	5	8	6	8	13	6	9	5	8
ATCACGATCGATATTT	ref_1587_upstream	28	13	28	33	15	23	15	30	13	23
GATAGAGGTAATTTAA	ref_1587_upstream	22	9	26	24	4	25	16	20	9	24
GAAGAGATGTTACCGG	ref_1587_upstream	122	56	153	139	69	97	63	101	54	112
TTTAACGATAGAGCGG	ref_1587_upstream	200	107	272	234	128	217	145	213	112	168
CCGGCGATGATAGCGG	ref_1587_upstream	18	19	24	13	10	21	6	13	6	19
ATTTCAATAGGATCCC	ref_1587_upstream	45	16	51	51	19	40	17	54	11	39
CCCCTTACACCGATCT	ref_1587_upstream	72	60	103	105	44	63	43	74	52	67
TAGCTCTCACTTTTTT	ref_1587_upstream	14	7	25	14	15	23	14	25	17	11
GGAACCTCTCAACTTT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GATTTCATTGAGGCCA	ref_1587_upstream	147	64	177	152	69	132	82	143	85	136
AGCTCGTTTCGGTTCT	ref_1587_upstream	140	59	190	164	75	108	96	144	86	112
CTGGCCGTATCGCCAT	ref_1587_upstream	78	63	111	93	67	72	65	92	61	83
TTTGCTTGCAACCGTT	ref_1587_upstream	87	42	118	97	62	111	67	81	56	101
AGTTCTTGTTTCTCCC	ref_1587_upstream	7	7	14	13	13	15	8	17	5	11
TCATCTGGTTATATCG	ref_1587_upstream	117	57	169	131	70	113	77	113	66	123
TTCGTAATTCCCGCAC	ref_1587_upstream	42	21	61	49	22	44	19	38	22	37
CCCTCTGTAATATTTG	ref_1587_upstream	92	96	137	111	84	91	95	115	77	90
TCACGGGCATGTTATA	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGTATAGTAATTT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GTGAGTTCATATCCAC	ref_1587_upstream	37	33	45	38	20	34	30	43	18	27
CTGTGGCCAACTAGGC	ref_1587_upstream	13	13	28	14	13	17	12	8	11	13
TCATTTTTTTTTTCGT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
AAATCAATCATCTATT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTTTTGGATCGC	ref_1587_upstream	95	33	98	84	42	74	58	88	57	86
GCGGGCCACATTTAAG	ref_1587_upstream	16	13	23	23	8	28	9	28	11	15
TGTATGGGCTCATCCT	ref_1587_upstream	68	28	90	66	22	57	27	45	36	54
GCCTTACAAAAGTCTT	ref_1587_upstream	52	24	62	67	35	51	28	53	34	43
GTATTCACGTGTGTCT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCGTCTCCGCTCT	ref_1587_upstream	53	13	37	47	20	31	18	38	16	33
TGATCATAGGCATCCC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTAAACGTCACC	ref_1587_upstream	27	16	38	27	16	27	11	28	17	35
GCTATTTTACCCGTAT	ref_1587_upstream	125	57	156	130	78	103	58	107	60	91
CTTGTCTTCTAAAAGT	ref_1587_upstream	7	4	7	4	10	0	12	4	11	3
GCGCCACTGTTCTGGG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCCAATATATTTCGCT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTTCTCCCCACC	ref_1587_upstream	15	13	12	16	11	9	13	12	12	14
AAGTTAGATTTCCTCA	alt_1587_upstream	163	80	148	133	64	118	60	165	67	105
TCATTAGTGCTATGTA	ref_1587_upstream	21	7	27	12	14	23	17	27	10	28
GGTGACGGAGATTTGT	alt_1587_upstream	975	341	1133	1094	389	914	377	965	366	918
CACATCGGGGAACCGA	ref_1587_upstream	17	8	19	20	12	21	6	16	5	18
TTATCGAGTTCCTTTT	ref_1587_upstream	20	6	17	12	16	6	7	20	12	13
GTCCTTTACCAATGGA	ref_1587_upstream	112	47	108	139	54	120	59	105	69	107
GACCGAGTTAGCGCGT	ref_1587_upstream	198	82	221	222	89	180	89	170	95	151
AGCTGTGGCTTGCGTC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CCATAGTTGACGTCCA	ref_1587_upstream	90	59	98	85	63	72	71	94	54	75
ACCTTAGATGGTGACA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGCCGGGTGATTT	ref_1587_upstream	757	384	876	848	444	672	373	698	407	666
CTACGTGTGGGTTAGA	ref_1587_upstream	147	77	196	168	76	143	80	177	108	138
CCTTGACTATGGTTAA	ref_1587_upstream	40	24	63	56	20	66	40	59	27	43
CGCTTCGAACTTCAAG	ref_1587_upstream	314	154	434	358	189	300	183	320	177	253
CCGAGGATACAAAAGG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTATTTCTCAACC	ref_1587_upstream	25	24	39	26	18	30	17	21	17	19
GTACTTTATCTTGATT	ref_1587_upstream	1	3	5	5	0	2	1	0	0	1
TTCAACGTGTGCACCT	ref_1587_upstream	374	204	424	354	213	303	204	312	227	308
CCTTCACAGAGCCGGA	ref_1587_upstream	606	296	759	698	365	640	279	624	335	614
CTTCATTGTTGGGTCC	ref_1587_upstream	26	8	26	32	7	18	9	16	12	21
GGCTGCTTGAGTTTTA	ref_1587_upstream	3	10	15	5	6	12	8	7	2	5
GTCTACTAGGCACAGT	ref_2605_fdr	99	50	107	109	53	83	55	87	68	74
TCCTGCTAGGGCGCTT	ref_1587_upstream	30	25	50	27	21	24	14	29	23	23
ACACAGTGGGAACGCG	ref_1587_upstream	35	12	55	43	22	43	30	41	18	35
CGCCCGGCCCGTCTAG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
AGAAAGGCTTAACTCT	ref_1587_upstream	167	84	230	199	88	183	105	180	97	134
GTTGGCCGTATGAGGG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCTGGAGGGCGGT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTCCCTTAACATC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTTTCCTATGGA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GGATGCCCTATTGTGA	ref_1587_upstream	64	29	68	79	47	54	46	76	36	68
GTATGCCAACGTTGAA	ref_1587_upstream	61	33	81	98	39	70	31	76	74	60
GTTATACTGGCAGTCT	ref_1587_upstream	23	12	26	22	6	21	10	17	8	18
ATAAAATCGCGCCAAA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
AATTACTCTAGCCTCT	ref_1587_upstream	41	20	46	40	21	37	14	30	15	35
ACTCGGTCCTAGGCAC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACTCAACTATGAACTA	ref_1587_upstream	29	8	33	26	25	23	17	32	18	17
TCATTTTTTTTTCGTA	ref_1587_upstream	319	174	460	382	170	300	182	323	181	283
TCATAGGGGACTGACG	ref_1587_upstream	71	24	73	62	37	67	54	67	31	68
GGACCTATGTTCGGTC	ref_1587_upstream	35	16	46	32	16	31	15	24	15	17
ACTAGATTAGGATTAT	ref_1587_upstream	119	65	145	150	96	122	73	127	70	101
TCCATGTGAGTGATCG	ref_1587_upstream	129	45	131	115	73	130	58	113	74	95
AACTGTTCAACTAATA	ref_1587_upstream	13	7	23	14	13	14	5	11	11	18
ATTCCCGTTCGTTTCG	ref_1587_upstream	21	24	27	18	11	13	20	25	8	15
CTGTCGCCAATGGATC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTGAGCGCACTCG	ref_1587_upstream	93	51	116	86	41	86	61	90	62	99
CCCTTGAGGCGTTTCT	ref_1587_upstream	56	76	98	77	77	64	70	66	65	48
GGTTATTTACGAACTT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTTACATGATACA	ref_1587_upstream	28	16	33	31	17	26	14	22	19	24
AAATATTCTCAAATGA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTCGCAAACGGGC	ref_1587_upstream	16	28	23	20	25	14	37	18	31	12
GGAGGCAAGCGGATTT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCTCCCATTCAGG	ref_1587_upstream	115	63	114	115	56	105	53	100	63	76
AAATTCCCTCGTTTAG	ref_1587_upstream	110	69	140	132	64	98	79	109	68	116
TTATCCCCGCAATTTA	ref_1587_upstream	41	25	40	42	19	23	22	24	32	27
GCGGCTAATTGAGCTG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACGGAGAGACGTTACG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTTTGTTTCGGCA	ref_1587_upstream	374	191	430	341	171	378	180	333	172	283
CAAAATGTGTACATTA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
AACGTGCGGAATTAAT	ref_1587_upstream	71	37	95	77	53	87	39	77	42	49
ACGCCCGGGCTTGTTA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACGAAACTTCGACTAA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTCATTCTCAAGC	ref_1587_upstream	116	80	143	124	81	109	76	115	68	100
CGAAACTTATTTTTTA	ref_1587_upstream	125	51	157	107	67	121	80	115	52	109
TATTATGGTATTTGAA	ref_1587_upstream	123	79	184	143	64	128	83	133	98	127
CCTCGGTCTGAAAATA	ref_1587_upstream	19	11	18	18	11	30	12	25	8	15
TGTATCTGAGGTCGTA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCCACTGAATTG	ref_1587_upstream	124	59	122	126	54	94	56	111	48	102
ACCACAGAATATGGTC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGCACTTGATCTT	ref_1587_upstream	104	60	146	137	55	109	47	126	56	95
CGGCACGTCACTTCTG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCTGTGAGAAGCC	ref_1587_upstream	42	20	55	43	16	38	20	38	22	32
AACATGTAGCGCTTAC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGAGGCAATCCTG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GGTATTATCCGAAGTT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTCCTATTCTTAG	ref_1587_upstream	21	15	32	16	15	13	16	34	9	19
TCAATTCGATTCAGCG	ref_1587_upstream	67	34	70	78	36	69	42	68	47	59
GTTCGTCCTAATTTCG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCCCTATAAGGTA	alt_1587_upstream	46	17	60	49	19	35	17	32	23	35
AATCTGATCCTCTCCA	ref_1587_upstream	295	145	366	306	153	287	157	278	136	254
TTCTATGAGGGGCTCG	alt_1587_upstream	74	24	115	83	16	73	21	88	23	53
GACCGCTTCTGTTCGT	ref_1587_upstream	60	36	71	77	32	48	36	59	34	48
GCTGCTCCCGGGTTGC	ref_1587_upstream	9	5	18	13	3	5	7	12	6	5
TGGCGCCTGCTGGGAA	ref_1587_upstream	52	19	90	75	27	46	33	55	40	60
GGAAATTTCACACTCC	ref_1587_upstream	37	30	51	38	47	47	49	30	39	41
TACAACGACGTTTTTA	ref_1587_upstream	90	41	105	75	37	79	29	62	51	71
TGAAAGTTAGCGCACC	ref_1587_upstream	17	7	16	14	2	4	7	9	3	10
TAGACCGTTAAAGTTA	alt_1587_upstream	168	92	259	191	89	166	94	171	102	178
ATTAAATCTGCCGACT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGCCATCGTCAACTTA	ref_1587_upstream	45	42	65	56	49	55	53	63	46	66
GGGGCGCAAAGAATTT	ref_1587_upstream	265	129	313	295	123	283	123	260	159	238
CGCCCTTTGTGCCCTG	ref_1587_upstream	34	13	39	35	25	25	12	23	23	34
GTAGGCAGTCGCTGTC	ref_1587_upstream	45	18	34	24	16	22	24	22	14	28
CACGATAACCAGACTT	ref_1587_upstream	23	12	19	23	17	26	13	20	19	22
ACTGACGTCTAACGCC	alt_1587_upstream	86	35	122	115	34	78	40	93	35	98
GGGACCGCATTCTTCC	ref_1587_upstream	68	50	93	72	49	60	43	68	50	74
GTCTATCAGATTTCAC	ref_1587_upstream	45	18	34	40	21	38	19	21	22	39
GTATCATTTAGAAAAG	ref_1587_upstream	27	15	43	26	21	24	18	43	30	44
AGGCTCCTTTGTAGGT	alt_1587_upstream	88	41	112	86	32	77	53	90	46	78
AGCTATAGCATCCGGT	ref_1587_upstream	136	60	146	158	57	102	51	133	57	108
CTTAAGATAGTCATCG	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGCCTGGAAATCC	ref_1587_upstream	64	38	100	85	34	65	41	75	36	53
GCCGTAACTATAAATA	ref_1587_upstream	4	2	7	8	3	2	3	9	3	5
CTATTCGGTTAGCAAT	ref_1587_upstream	110	47	130	123	59	98	65	100	57	102
CACTCGTAGTTGTGGC	ref_1587_upstream	43	26	48	43	29	38	25	36	35	41
GCTTAGGAGTAAATCT	ref_1587_upstream	49	30	48	57	39	51	23	46	20	47
TCCGGACAGTCTCGAA	ref_1587_upstream	79	55	108	70	52	74	48	65	59	55
TAACTTTCAGTTGATC	ref_1587_upstream	8	6	24	11	4	11	7	11	5	8
CTCTCCAGTCCAACTT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGATAAAGATTCT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATACCCTTTCAGATAT	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
GGTGTGCATAGCTTCA	ref_1587_upstream	178	106	226	203	102	189	96	150	104	157
TAGAGATGGTCTATTT	ref_1587_upstream	24	13	17	27	12	11	12	18	5	14
GAGCGAAACTTTATTA	ref_1587_upstream	52	36	118	84	32	70	35	83	39	64
ACCTTCTTCCGTTTGA	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACCGACTGACGGACGG	ref_1587_upstream	14	8	16	11	10	10	4	19	4	9
AAGGATAGACTTTTCT	ref_1587_upstream	70	39	74	84	36	73	42	79	33	64
TTGTGCCTGCTCACAA	ref_1587_upstream	29	17	41	29	14	18	17	38	14	39
ATCTGGCGACCTGACG	alt_1587_upstream	120	63	143	88	71	107	64	124	71	72
AGACTGTCTATTGTCT	ref_1587_upstream	57	23	45	46	23	43	17	22	30	35
CATTACTACGCAGCTA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
AATTGCTGTCCTCACA	ref_1587_upstream	43	17	50	51	25	29	25	38	23	39
CAATATGATCGTTAGC	ref_1587_upstream	70	31	120	92	41	75	35	51	49	86
TCAATCTCTTCGTCTG	ref_1587_upstream	26	11	45	32	13	26	13	34	16	18
CCGCCTAGTAATGCCA	ref_1587_upstream	16	14	16	12	13	16	17	12	8	18
GCGCACCCGGTCCCGC	ref_1587_upstream	640	289	796	772	308	685	283	644	274	619
TGGTATCGGCTCTTGC	ref_1587_upstream	26	8	31	27	9	19	8	17	9	16
TACCGTCCATAACGCC	alt_1587_upstream	54	22	56	81	17	49	21	38	13	36
CGTGGCTCCAGAGCCT	ref_1587_upstream	60	19	70	70	29	50	24	43	29	50
AGTCTGTCCAGCGCAC	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCGGAGAGACGTTACG	ref_1587_upstream	302	155	366	323	156	311	140	310	158	260
GGACATGTGTAGTTGA	ref_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCATTGAACCATA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TGAATTTTATTGACAC	alt_2295_upstream	139	151	154	119	110	133	164	124	151	132
GTCTCCTACTGCGAGT	alt_2295_upstream	54	65	58	48	78	62	77	47	79	41
TGGACCTAAGCAATGT	alt_2295_upstream	25	29	28	26	25	27	30	23	36	23
CCCTCATACGTTTTCT	alt_2295_upstream	115	180	158	124	190	128	181	126	209	135
AGTCGCTCGCGGATAT	alt_2295_upstream	40	54	57	26	45	53	54	43	57	37
CTAGGAGATGCGCGCC	alt_2295_upstream	127	141	156	96	133	128	148	108	140	122
CTGGATAGGCACTGTA	alt_2295_upstream	112	143	162	100	118	107	145	125	141	127
CTCAGGCCTAAAGCGT	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTCGTGACGGTTC	alt_2295_upstream	10	15	2	4	18	4	11	4	20	10
CATGTCTTAAGACGCG	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTCCACCCTAATTGCT	alt_2295_upstream	48	51	46	20	45	26	43	32	44	25
CGCCTTAGATGCAGCT	alt_2295_upstream	68	56	98	57	95	61	71	69	90	56
TCCTTACATGATCAGT	alt_2295_upstream	45	56	57	50	69	42	49	43	66	42
CTATCTGGGCGTTACC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
CGAGACTCGCCCAGTC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
ACTACAAACCGGCACA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
ATTGACATTTTCCCGG	alt_2295_upstream	53	51	71	45	47	42	69	47	62	50
CGTTACCTGCCATCTC	alt_2295_upstream	57	59	55	59	62	40	56	58	53	48
CGTGTGTCGTTATCTA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
ACATTGTAACACACGG	alt_2295_upstream	6	11	13	11	16	7	12	5	6	9
GATCGCTCGGTTCTGG	alt_2295_upstream	11	11	12	7	4	7	13	4	10	15
TATCGGTAGGTCAGCC	alt_2295_upstream	93	86	102	86	101	97	88	96	98	80
CAGCGCTACGTAATTG	alt_2295_upstream	88	163	130	121	144	94	161	84	173	100
GATAGGTCGGATTATT	alt_2295_upstream	79	57	69	55	55	51	58	49	58	37
CCAAAAAAACCGTGCT	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGTGCCCATTTTC	alt_2295_upstream	14	42	32	19	35	11	41	9	35	15
TCTGCTATTGCCTGTT	alt_2295_upstream	40	45	44	44	55	28	80	30	39	33
GAATTTTCCTATCACA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TATTCATTGTTTCGAA	alt_2295_upstream	20	21	13	21	22	19	20	6	14	15
AGCTGATGCCCGCAGA	ref_2295_upstream	45	50	62	48	54	42	46	54	38	37
TAGTGTGTGTGCAGTA	alt_2295_upstream	6	6	9	0	11	6	11	4	8	5
TGGTTGTATTCAACTT	alt_2295_upstream	81	67	77	79	60	60	63	54	74	67
ATTTTGCGCCGGTGCC	alt_2295_upstream	12	9	11	14	11	10	14	20	18	14
CATATTTCCGGATCCG	alt_2295_upstream	41	33	41	50	54	29	50	41	50	43
AAGAATAAATCGTGTG	ref_2295_upstream	90	111	101	82	101	85	117	65	136	73
TTTTGAGAGCAAGTAG	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
CAGAATACACCACTGC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TATATAGCAACCTGCG	alt_2295_upstream	101	145	116	111	117	117	170	104	178	103
TATCTGACGCCGACCC	alt_2295_upstream	19	15	26	8	25	35	27	27	26	24
TTCGTCTGCGCGTAAT	alt_2295_upstream	23	21	24	17	17	24	34	19	26	18
TTGTACTTTGAACTGC	alt_2295_upstream	11	20	21	9	12	4	16	11	11	13
TCGATTCCTACTTGCC	alt_2295_upstream	35	41	34	32	65	19	53	26	61	28
TGTTAACGCTCTTAAT	alt_2295_upstream	59	55	77	47	69	54	70	58	78	52
CTTGTGAGAAGACCAC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
AATGCTGAGGCTGACC	alt_2295_upstream	89	115	88	100	109	104	99	102	129	76
GTAACGGCATACGATA	alt_2295_upstream	9	9	5	10	8	8	6	6	6	8
CCCTACGGCAAGGTTA	alt_2295_upstream	21	44	32	33	30	22	33	35	46	34
CTCCTAACACCCCGCA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTCTACGGATATA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCTGAATAAAGGC	alt_2295_upstream	37	49	45	31	45	32	41	30	42	32
CTACTAGAGACATCTA	alt_2295_upstream	7	3	7	3	7	6	7	2	7	0
AGATATCGGCGCCGCT	alt_2295_upstream	26	30	46	23	39	28	21	24	43	24
TTGCCTCGGATCCCGG	alt_2295_upstream	14	12	18	18	25	18	19	8	18	9
CAGACGCTGTGTAATC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TTAAATCGGTTTTAAG	alt_2295_upstream	86	91	72	60	98	87	119	76	73	58
CCAAAAAAAAACCGTG	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
ACACGACATAATTTTG	alt_2295_upstream	95	89	104	91	126	104	95	81	117	65
GGCGCATCGAGACTTG	alt_2295_upstream	73	70	93	69	69	61	80	72	92	76
CGTAGCTGGGGTATGG	alt_2295_upstream	12	5	13	4	8	8	10	13	10	9
TATTGCAGTAGGTGCG	alt_2295_upstream	4	3	15	12	15	2	8	7	9	8
TACGCTTTCTTCATTC	alt_2295_upstream	25	23	34	17	16	26	23	31	26	17
TTGGCCCCCGCGCACT	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TGACCAGTGAAGCTTT	alt_2295_upstream	22	19	27	17	27	20	20	13	21	24
TGACATGGACTGGGGT	alt_2295_upstream	98	57	94	82	89	73	75	60	73	86
GGACTCAATATGGCGA	ref_2295_upstream	339	218	374	283	256	285	234	280	236	275
TGCGGAGGTGTGTCGA	alt_2295_upstream	45	50	61	34	49	30	44	31	52	40
GTGGCAGGGTTACTGT	ref_2295_upstream	23	12	30	10	29	24	21	9	24	15
CGACGTTGTTGTAGCT	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCGCGCAACGAA	alt_2295_upstream	10	12	11	6	9	14	9	12	13	8
CCTCACGGACTTCCCC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
GATCGTCACGAGCTTC	alt_2295_upstream	27	23	46	34	38	23	33	22	33	29
GACCTTTTGTGGACTC	alt_2295_upstream	59	56	59	50	61	54	47	52	62	54
ACAGCTACCTTTGTTT	alt_2295_upstream	32	48	30	31	69	16	80	24	58	15
TGGGTTACGTGCATAC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
GCACTGAAGCGTGAGA	ref_2295_upstream	15	11	15	15	22	19	16	17	18	11
GCCTTCCCCGAAGGGA	alt_2295_upstream	25	31	22	31	41	26	42	18	27	23
ATAATTGTAGCTCGCA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGTGGGGCAGCTT	ref_2295_upstream	37	37	41	33	31	30	30	40	37	33
TTGCCCCTACTCTATC	alt_2295_upstream	39	28	37	40	45	31	37	47	55	35
CGGTTATCTTGAGAAA	alt_2295_upstream	5	6	9	10	8	6	10	8	11	8
AAGCTTGATTGCCTCG	ref_2295_upstream	17	7	20	9	16	12	12	16	13	16
ACTCCTCCTGCCTCAG	alt_2295_upstream	5	7	3	2	9	8	8	2	8	4
TATTTTCTATCGTTCG	alt_2295_upstream	204	198	260	161	231	178	198	178	232	167
GCAAGCACTCTATTCG	alt_2295_upstream	9	16	10	5	13	5	12	6	10	7
CGGTCGTGTCCACGGG	alt_2295_upstream	30	48	26	22	35	18	50	28	47	24
CCAAAAAAAACCGTGC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTAATTCCCGTCAGAA	alt_2295_upstream	32	33	29	46	25	23	33	32	29	19
CCCTGCGGTCTTCCGG	alt_2295_upstream	17	18	17	6	17	10	25	10	20	9
TACGTGTATTCCCTAC	alt_2295_upstream	11	8	10	10	18	15	14	7	15	15
TTTAGTACTACTTCTC	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
GCCGCATGCCTTGTAA	alt_2295_upstream	10	17	22	21	22	17	27	14	19	8
TGCATTTTGATTTTTA	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTGTCGCTGAATG	alt_2295_upstream	10	27	13	17	16	12	24	14	25	10
CTGTAGATTGCCGGAT	alt_2295_upstream	17	28	30	21	25	17	35	23	36	23
GTCGCTAAAAAACACC	alt_2295_upstream	41	38	50	36	42	46	59	30	60	31
TATCATTAGGCTCGGT	alt_2295_upstream	35	33	60	29	43	34	28	29	38	32
AGCTATTTCTGGATAA	alt_2295_upstream	75	78	86	60	99	51	82	64	103	69
GATGTATTACACGGGT	alt_2295_upstream	9	10	11	12	4	9	13	15	12	5
ACCCCTCTGACACATC	alt_2295_upstream	37	31	55	42	42	31	45	37	54	37
GTACCCTTCTGCACAC	alt_2295_upstream	9	17	15	12	20	14	26	16	20	15
GGTGCACCGGATTTGT	alt_2295_upstream	33	19	23	15	17	22	23	23	23	16
CCAGCCAGTTTAGAGT	alt_2295_upstream	4	36	15	9	47	6	30	5	41	4
TAACTCCTGTCGTAGC	alt_2295_upstream	271	274	271	222	290	209	301	192	333	189
TGATTAAGCGTGCTTT	alt_2295_upstream	0	0	0	0	0	0	0	0	0	0
GCATTCAATGGGTCGA	alt_929_upstream	16	4	11	12	3	12	2	14	3	14
TTAAGAGCAATTGGGG	alt_929_upstream	186	42	235	218	33	202	50	202	43	204
TAGTAAGACCTCTGAT	alt_929_upstream	22	3	29	23	4	20	2	21	3	18
CCAAAACTAGGGATGG	alt_929_upstream	300	57	319	323	64	281	76	333	75	268
TGCATTTTTATTTCCT	alt_929_upstream	374	64	521	500	106	386	73	397	86	342
CTCGCGGTCACGCAGG	alt_929_upstream	311	60	380	348	55	298	59	270	60	310
GCCGTTTTCACATCGC	alt_929_upstream	22	6	27	15	4	17	2	32	8	23
GCGTTAACGCTGGTAA	alt_929_upstream	252	47	344	292	48	255	62	224	61	290
CAAAGCGGTCGTCTGG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCCGATATTTCAC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCTTAGGGCGCCA	alt_929_upstream	4	1	1	1	0	3	0	4	0	1
AATCGCCTAGAGCCCT	alt_929_upstream	107	32	145	142	26	96	22	113	22	102
AGAGCTGCGTTCGTGA	alt_929_upstream	171	31	217	187	41	179	53	178	49	155
ACTTGTTTCTCACCTC	alt_929_upstream	13	6	26	23	3	15	6	12	4	12
TGTCTATGCGTGCTTC	alt_929_upstream	107	22	146	121	23	76	30	93	20	112
GCTGGTATTGTAATTC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCGTCGTGACCAC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
AACTTACTTGGTACGT	alt_929_upstream	110	25	130	97	25	113	28	110	27	99
CAGCCAAGTCCTAACA	alt_929_upstream	165	52	223	167	53	150	52	198	48	174
CTCATTCTACAGATTT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGGCTACGGTTTC	alt_929_upstream	156	46	227	183	50	183	43	180	38	163
GGTCATTTTGACTCGC	alt_929_upstream	78	11	80	63	14	68	11	61	15	63
GCGCTTATCTCAGCAG	alt_929_upstream	78	13	34	79	16	63	16	82	18	54
CAGGTATTCGCAGTCT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGATTCCTGTGGG	alt_929_upstream	38	2	39	35	10	36	4	29	5	28
AGTTGACTCCTAGGTC	alt_929_upstream	20	3	35	24	2	15	1	18	6	27
TGTAGGCTTAGCCATT	alt_929_upstream	149	21	146	153	40	119	44	113	30	137
TCGAACGTGCTTATTC	alt_929_upstream	209	40	260	211	41	235	39	214	30	156
ATGTGTATGTATATGA	alt_929_upstream	946	233	1197	983	212	854	241	950	233	900
TTGGAATAATTGCGTG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTGGCCTTTTGAT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTATCTCTGCGC	alt_929_upstream	239	63	323	299	72	249	59	270	71	230
GGTTAGCGGGATGTGT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GGACGCTGACCTACTC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCGTATTCTCATG	alt_929_upstream	449	98	499	495	118	384	108	411	111	411
GCCCATGCTTCACTGA	alt_929_upstream	104	32	126	119	21	105	36	99	28	95
CTGTCTGACACGCACT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGTAACATTTTTT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TACAAGCTAACTGCAA	alt_929_upstream	18	7	47	32	15	33	3	38	1	29
AGTCCGTCGCAGTAGG	alt_929_upstream	55	18	78	66	18	66	15	59	18	70
TCAGTTTTCGTCCTTG	alt_929_upstream	105	14	92	86	23	87	22	65	27	75
CGATTGTTAGTAACCG	alt_929_upstream	70	12	97	96	21	85	18	71	5	53
CACGTCTCCGCCTCCG	alt_929_upstream	150	26	146	146	30	127	39	145	24	127
ATCTTACATCCTCCGC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GGTACAAGCGTGACCT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TTACTGTCTATTTACA	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTTTAGCCCTCCT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGCCCATCGGAAA	alt_929_upstream	1	8	5	3	13	6	5	6	7	5
CTCTTGGTCGACCTAG	alt_929_upstream	18	22	25	36	19	22	16	30	27	20
TGCGATGGTGAGAGAC	alt_929_upstream	79	7	88	85	18	83	13	91	11	70
TACAGTCAGTTCGTAT	alt_929_upstream	152	27	179	154	37	137	40	155	47	142
ACGCTTGTTGGTCAAG	alt_929_upstream	237	59	347	246	59	243	57	204	78	175
GCACTCTTTAAGATTA	alt_929_upstream	961	210	953	825	175	776	181	756	192	789
ACGTAGAATTCATTGG	alt_929_upstream	74	14	95	76	14	82	17	56	13	62
AGTTTAAAAGCGACTG	alt_929_upstream	103	29	123	119	31	87	32	91	27	103
TTCACATCCAACGCAA	alt_929_upstream	140	26	150	111	27	125	19	125	22	143
TGACGACTGTAAGAGG	alt_929_upstream	171	43	243	187	39	181	37	176	39	155
CATCCAGTCTTCCTGT	alt_929_upstream	3	2	0	7	0	3	2	7	0	0
ACGAGTTGGCCGCTTT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GCAATAAGCTTTGTGA	alt_929_upstream	126	35	148	152	21	118	27	123	38	107
CCTTCGACGGCGTTTC	alt_929_upstream	46	28	41	37	34	39	20	38	29	42
CACCCACAGTATCTGG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGATATGTGCCCT	alt_929_upstream	789	176	995	884	173	799	163	801	160	687
GCACTGAAGCACACGC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGTTGGTCCGGAC	alt_929_upstream	219	39	313	231	45	242	40	216	60	200
GCTATCACCAGTTCGG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
AATAAGCACTTAGTAA	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCCATTTTTGTGG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGGTATGCTCTAA	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCGCCGCAAACGG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TTGGACAATCAGCAAG	alt_929_upstream	177	44	239	236	42	195	51	213	48	171
ACGAGGTTATGTAGCT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
CACCGGCGGATAGCAT	alt_929_upstream	42	28	70	67	33	61	23	60	24	38
ACGCCCTCATGACCTC	alt_929_upstream	164	34	227	208	36	171	29	174	42	152
TTAAATTTGTAACGCA	alt_929_upstream	67	11	86	82	14	64	10	55	10	51
TTTGTAGATCCCGACG	alt_929_upstream	102	32	126	84	11	115	27	76	34	89
AGTCTCCGAACTCGCC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTGAGGAAATTCG	alt_929_upstream	402	57	534	398	81	366	85	356	79	365
ATGTTAGATAGTTGCC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
CCACCGGTGAGGCCAG	alt_929_upstream	188	52	215	194	62	162	62	180	69	149
GCTTCCCCCGCTAATC	alt_929_upstream	194	46	288	251	30	227	40	213	50	215
CGTCGGTGAGAAGATT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
AGCCTGGTGCAACATT	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GAGCCGGTCATGGTGT	alt_929_upstream	177	64	248	204	49	183	73	208	76	170
CCCCATTAAGACAGAA	alt_929_upstream	63	31	105	99	23	84	23	66	24	71
TACCGCATCGAATATA	alt_929_upstream	63	13	89	63	14	75	9	65	9	45
GGGCGGTTGGTCACGT	alt_929_upstream	55	3	64	59	8	49	11	50	7	55
CAACATGTTGCGTTAA	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTTCCTCGCATTG	alt_929_upstream	48	3	38	49	11	43	13	38	7	25
CACCCCTATGAACAGT	alt_929_upstream	109	52	120	120	57	91	64	117	54	87
TACTCGGTATATTGAT	alt_929_upstream	203	38	229	217	29	178	32	180	34	163
TTCACGGCTCCCGTGA	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTGACTTCGATA	alt_929_upstream	110	29	112	119	28	100	27	109	26	107
TACCATGGCTCGCTTC	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
TATCTTTCTTTAGGCT	alt_929_upstream	1199	215	1503	1259	253	1196	233	1208	256	998
TGGTACCCCCGTTTTG	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
GATTCGAGCAGGGAGT	alt_929_upstream	174	48	243	206	36	165	38	180	36	159
GCGATCCTACCTTATT	alt_929_upstream	432	92	547	455	79	411	97	438	110	371
TGATTACAGTCTTGTC	alt_929_upstream	927	176	1149	969	174	855	207	825	198	842
AGACGACTACATGGGA	alt_929_upstream	240	42	278	227	49	227	50	240	48	216
GCTTCTTCTCGATGCA	alt_929_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCATAGTCGTATA	ref_5636_new	9	20	23	18	16	12	26	14	27	11
ATGTAGCGACAAACCC	alt_5636_new	22	13	20	20	22	21	16	16	12	12
GGTTACCACGCGCTCA	ref_5636_new	14	21	25	16	17	11	20	18	21	14
AGCGTCTGGTTATGTA	ref_5636_new	3	5	5	4	4	6	7	2	2	6
TTGCGCATATAAGCGT	ref_5636_new	29	34	26	30	37	23	45	26	33	15
ACAAATTGCTTCGCCA	ref_5636_new	170	161	223	199	177	155	154	174	199	153
ATAGTCAGGTACGTTT	ref_5636_new	0	0	0	1	0	0	1	1	0	1
TAGTATCTTTCTTTGA	ref_5636_new	68	74	81	78	94	62	96	86	102	65
AAGGGGCTCATATCCG	ref_5636_new	81	104	113	99	96	100	110	103	107	67
GTTCTTGCTGCTCTAA	ref_5636_new	75	68	70	88	90	72	92	67	99	61
CAACAAGTGGCGGGGC	ref_5636_new	0	0	0	0	0	0	0	0	0	0
AAAGCTCACTGACGTT	ref_5636_new	83	123	82	66	113	81	107	67	114	62
CACTTCTTTTGCAGCC	ref_5636_new	87	111	118	100	99	71	107	84	121	89
AGTTTATTACCCTACT	ref_5636_new	15	33	26	20	27	18	24	17	23	12
GCTTTCGTTAGCGAGT	ref_5636_new	179	244	230	223	231	183	253	177	263	185
CCGCGTTCGCAAGGAC	ref_5636_new	7	11	11	8	9	12	15	7	13	11
ATATAGCTAAAAATCT	ref_5636_new	41	40	46	41	40	31	49	32	58	45
TTGAATGAGCAGCTGT	ref_5636_new	230	267	273	244	282	224	307	253	336	194
GTCGTCTAATGGTGAC	ref_5636_new	255	206	338	235	201	257	182	213	229	223
CGTATATCGGACCCTG	ref_5636_new	18	30	31	30	34	24	38	16	37	28
CTCTATGTTCCTAGCA	ref_5636_new	0	0	0	0	0	0	0	0	0	0
CGTTCCGTATCTACAA	ref_5636_new	4	2	8	6	7	5	6	2	11	2
TCCGGGGATGCAGCCA	ref_5636_new	139	232	201	167	215	138	226	132	244	113
CAAACTACGTCTCTCA	ref_5636_new	17	19	29	25	24	13	30	11	37	17
CGGTTGTCCTGCGTCC	alt_5636_new	96	93	117	101	112	101	101	86	116	87
CTAACGTGTCTGCCAG	ref_5636_new	0	0	0	0	0	0	0	0	0	0
TTAATTATGCATACAC	ref_5636_new	39	58	58	44	48	38	59	38	48	24
AGTTCTTCTGATGGGC	ref_5636_new	9	17	8	11	19	10	22	17	10	7
GTGCGGGGTTTAATAA	ref_5636_new	12	26	22	19	33	20	31	13	36	19
GGCTGCCGCAAAGTCT	ref_5636_new	11	15	12	15	15	14	17	6	12	11
ATTAGGGCTCATAATC	ref_5636_new	13	13	17	13	16	17	24	5	9	10
ATCTCCCGGCCCCCCT	ref_5636_new	12	10	6	17	14	11	16	12	8	7
CGTAGCTCCTGTGAAT	ref_5636_new	26	31	32	29	37	29	26	24	26	24
CAGAGCGTGATATTAC	ref_5636_new	0	0	0	0	0	0	0	0	0	0
TCCTCATAAAAGGTCT	ref_5636_new	0	0	0	0	0	0	0	0	0	0
TGTATATTTTTGACCA	ref_5636_new	8	6	10	10	7	7	10	7	8	1
AGTGGGCTCATCGCCG	ref_5636_new	94	88	111	113	135	87	117	106	120	115
TCTCAACTGTGTCTTT	ref_5636_new	12	31	18	21	32	17	18	14	28	20
CGAATTGAATCCCAGG	ref_5636_new	7	5	11	12	5	7	10	15	6	9
ATAGGGAGGATCTAAG	ref_5636_new	192	221	223	206	237	198	237	178	279	139
ACATTTGGCCCCTGGC	alt_5636_new	29	75	43	46	75	44	66	45	67	32
AACTCTTGCTACCCCG	ref_5636_new	85	110	93	101	121	91	136	59	106	78
GCTATTTCTAGTAGAG	ref_5636_new	0	0	0	0	0	0	0	0	0	0
ATCGTGTGTAGTTAAT	ref_5636_new	36	57	49	45	69	46	59	45	75	30
GTAATAGATAATGAGT	ref_5636_new	21	21	22	16	26	13	18	14	15	16
TTATACCCCTGAACAT	ref_5636_new	42	53	48	35	69	33	64	28	74	34
GTTTTTCACGACATCC	ref_5636_new	62	98	68	74	97	49	96	53	107	59
GAGTGCGTCAATAGTC	ref_5636_new	31	50	43	40	36	32	49	25	47	30
ACTTTAGTAGCTCGTT	ref_5636_new	0	0	0	0	0	0	0	0	0	0
ATCTCTGCGCAAGTTC	ref_5636_new	30	18	30	21	25	25	30	23	15	27
GCCTGTATATTAGCGG	ref_5636_new	22	28	30	24	32	15	37	17	36	29
TTTAAACATGGGCTCT	ref_5636_new	66	83	114	86	104	66	82	103	92	76
GGTTGCTTTAGGGTGT	ref_5636_new	26	25	16	15	30	14	26	21	24	9
GTATGAATGTGGAAAG	ref_5636_new	70	87	75	59	78	66	66	65	66	55
GTCCCAATACGGCTTG	ref_5636_new	12	5	14	11	8	14	12	14	8	8
GTGAAATGATCACGAG	ref_5636_new	11	5	19	13	8	6	9	6	14	7
TCGTGTCCCATACCCA	ref_5636_new	0	0	0	0	0	0	0	0	0	0
AAGTTGCAACTTTGTT	ref_5636_new	6	20	7	6	10	9	13	11	12	7
ACATTAAGGTTGGCTC	alt_5636_new	75	74	62	73	101	52	103	64	92	59
CGATACACGCTGTTAC	ref_5636_new	52	74	62	55	78	48	75	44	65	39
TTACGCTGTGTAGAAT	ref_5636_new	35	56	49	50	56	47	50	39	45	50
CATTTACCTCGCGAGG	ref_5636_new	50	57	64	43	63	42	54	38	62	52
TCTCTTCTTCATTAGT	ref_5636_new	69	75	92	81	84	75	78	88	84	67
TTTCGTGGTTACTCAA	ref_5636_new	0	0	0	0	0	0	0	0	0	0
GTACTTGTGCTTTGTA	ref_5636_new	25	20	44	44	22	39	16	29	16	23
CTAAATACTTCGCGGG	ref_5636_new	14	22	14	14	12	11	18	6	20	14
GAGATATGGAAGCTTA	ref_5636_new	18	20	19	16	23	18	21	15	13	13
ACATGCTACCGCCGGC	ref_5636_new	0	0	0	0	0	0	0	0	0	0
TTGTTAAACGTTTTTT	ref_5636_new	66	78	68	73	89	74	84	55	85	59
GTGATGCTCATATGCA	ref_5636_new	0	0	0	0	0	0	0	0	0	0
AAACAAGGGCCGTATC	ref_5636_new	0	0	0	0	0	0	0	0	0	0
TTGTCTAGGGTTGTGT	ref_5636_new	6	29	15	11	22	8	20	5	24	14
GACTCCAGTTTAGCTC	ref_5636_new	32	31	29	19	23	22	34	24	30	18
ATTTGTAACCCCTCGA	ref_5636_new	23	33	28	36	40	27	36	23	26	26
ATACCAATTTTTCTCA	ref_5636_new	325	389	380	343	447	274	450	249	465	288
TTTCTTACTACTCGCA	ref_5636_new	38	43	52	43	45	48	54	28	65	33
TCCTGGGTCTAGTAAC	ref_5636_new	0	0	0	0	0	0	0	0	0	0
TACTTTGAGTGACGTC	ref_5636_new	0	0	0	0	0	0	0	0	0	0
CACGGGCAACACTCGC	ref_5636_new	43	56	50	58	53	39	58	30	63	38
TACAGCAGGTGAGGGG	ref_5636_new	331	404	353	302	333	278	398	240	374	250
AACATAGTATGCCGTG	ref_5636_new	13	17	14	11	10	11	12	13	12	8
GCATATATCATTAACA	alt_6091_new	33	25	35	34	30	28	37	39	26	27
AAGTCTGGGGCGTCTC	alt_6091_new	32	23	37	32	42	25	31	28	37	21
GCTTGATATCTTTCAT	alt_6091_new	5	8	5	7	7	5	15	5	11	9
CCCGTCAGCCTTCTGG	alt_6091_new	42	66	49	59	81	35	75	33	73	36
GATCGGCTCAGCATTA	alt_6091_new	83	61	87	59	73	60	72	65	65	60
CCGTAATGGATAAATT	alt_6091_new	2	6	1	3	5	7	4	1	7	4
GTTCCTCTCCTCTGCC	alt_6091_new	39	44	38	48	45	44	40	35	50	29
TCAGTTTTTAACAGCC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
CCGGAAGGTTTACTTG	alt_6091_new	11	12	22	20	13	23	28	17	18	13
ATTGTGTTAGATCCTG	alt_6091_new	54	82	84	55	70	57	70	41	79	46
TGCGCGTACGATGGCG	alt_6091_new	9	7	16	8	8	4	3	15	10	8
CACGCATTGGTTTATG	alt_6091_new	12	23	27	15	25	24	40	22	28	25
TTGGTTCTGGGATTAT	ref_6091_new	279	302	336	265	335	267	318	297	297	232
CTTCGACGGGCGCAAG	alt_6091_new	0	1	2	1	0	0	0	1	4	1
CATCCGAGGTATGTGT	alt_6091_new	40	51	49	49	45	47	53	47	48	39
ATCAGTGAGGTTATGC	alt_6091_new	9	15	9	9	21	6	17	13	19	11
CTTACTTCCCCGTCCT	alt_6091_new	0	11	1	1	18	2	15	1	7	1
CTCCTTGTTCGCTGGC	alt_6091_new	17	37	28	13	51	13	61	20	29	8
CCGGAAGACTTCCAAT	alt_6091_new	39	45	55	27	37	34	34	27	35	23
TTTGAATTCATTTCAT	alt_6091_new	21	41	35	19	31	26	34	18	29	25
TTGTTTTTGGTGTAAG	alt_6091_new	34	56	68	45	49	41	57	46	33	39
CCTACCGGTTTGATGG	alt_6091_new	56	53	100	63	77	42	75	67	64	60
TCGATTTGGTCTTGGC	alt_6091_new	37	70	40	22	60	25	44	18	48	23
TGCAGACCCCGCCCGC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
CAATTCAGCATCCTCT	alt_6091_new	2	16	8	5	10	6	11	4	0	9
CCGAATGAGGGGTTTG	ref_6091_new	15	19	21	11	32	9	34	14	31	8
CCTGAAGTTAACTGCC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
AATCTACGGGAGGATT	alt_6091_new	59	80	71	82	76	51	72	63	96	56
ATAGGCCCCTTGGTCC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
AATCGAAATGGATTAA	alt_6091_new	38	26	53	28	15	21	28	24	32	22
GTAACATTTCATGCGT	alt_6091_new	4	6	4	9	2	1	5	4	3	0
CAGATACCGTTTCGTT	alt_6091_new	128	193	190	156	159	130	176	125	169	111
TCTCACGAAGACTTTC	alt_6091_new	22	24	28	28	10	18	17	15	22	20
GGTCCTGATCTCCGTC	alt_6091_new	15	14	23	14	15	12	14	25	19	17
GTGCCTCTTGCGTATT	alt_6091_new	284	360	367	330	382	271	415	303	413	291
TTGCGATTACACATTA	alt_6091_new	65	95	71	93	91	75	72	53	111	72
TGAGATGTATATCGCA	alt_6091_new	6	5	7	3	6	5	6	2	9	8
TGTCATAGTATTTTGC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
AAGACGTCGGACTCCT	alt_6091_new	46	49	50	45	48	37	58	33	39	32
AAAAACTTTATGTGGT	alt_6091_new	26	29	46	26	34	22	29	17	39	26
ATTAGATAGTACTGCC	alt_6091_new	25	33	19	19	23	19	31	11	18	13
GTGAGCCTACCATTGA	alt_6091_new	1	4	1	1	4	3	7	1	3	2
GCAATCTAGAACAATG	alt_6091_new	0	0	0	0	0	0	0	0	0	0
TTACGGTGACTGTCAG	alt_6091_new	6	11	8	14	19	12	9	7	15	11
GCTACAACTATTCGCC	ref_6091_new	67	122	97	65	100	60	117	78	114	60
TCGGGTGTCAACCAGA	alt_6091_new	0	0	0	0	0	0	0	0	0	0
ATTATGAAAATGATCT	alt_6091_new	56	68	69	70	77	65	97	63	73	63
CTTTTATCGGAGGCGG	alt_6091_new	8	15	13	16	19	16	25	15	23	11
TATGTTCTAGAGTCTT	alt_6091_new	0	0	0	0	0	0	0	0	0	0
CATCTTTTTTCGCAGT	alt_6091_new	23	28	29	23	25	22	56	23	57	20
TAACGGCTGTTTGAAA	alt_6091_new	127	128	134	139	145	109	148	119	139	115
TCATTCTATGTGCTAC	alt_6091_new	0	0	1	0	1	1	0	2	2	1
GTTCCAATTCGTTTCG	alt_6091_new	70	39	85	80	75	62	84	59	64	51
TGCGGCCCACGAGTGT	alt_6091_new	0	0	0	0	0	0	0	0	0	0
CGGGATCGTGCATGAG	alt_6091_new	46	66	79	33	57	58	60	41	52	41
GTATCCTCGTATATTG	alt_6091_new	0	0	0	0	0	0	0	0	0	0
ATGTGTATAAACTCTG	alt_6091_new	9	11	3	7	13	5	9	4	13	10
TGTAGACCAGGTGGTT	alt_6091_new	24	36	21	22	40	16	25	32	35	23
ATGTGATTTGTGTCGA	alt_6091_new	8	9	7	4	8	4	13	4	9	6
GGCTTGCGTCTACGGC	alt_6091_new	122	113	132	134	138	117	132	100	140	93
ATTGCAGGTGATTGTA	alt_6091_new	70	92	97	68	84	53	66	65	79	51
ATATGGTACTTGAGAC	alt_6091_new	19	20	21	20	20	19	32	13	42	19
CGTTGCTTGTACGTTG	alt_6091_new	53	61	48	44	54	57	66	36	60	49
CACGTCTTTTGTGCGC	alt_6091_new	50	71	48	51	65	46	88	42	78	42
TATGGATTGTCATCCG	alt_6091_new	0	0	0	0	0	0	0	0	0	0
GGCTCACGTCACGGTC	ref_6091_new	37	50	56	22	37	31	43	33	49	35
TTTTCTCTTGCTAGAA	alt_6091_new	11	10	8	8	12	7	12	12	14	10
CATTGCCTGAACAGTT	alt_6091_new	0	0	0	0	0	0	0	0	0	0
TTCACCCTAATAGGAT	alt_6091_new	19	17	17	24	23	12	12	25	24	21
TCCCGTAACAGATGTT	alt_6091_new	0	0	0	0	0	0	0	0	0	0
CTCTGGCGTTGGGGAT	alt_6091_new	39	32	54	56	45	47	55	33	36	38
CTATAGCTGCGCATGG	alt_6091_new	50	88	83	82	95	62	148	71	97	72
TACCGGGTTTGTTTCA	alt_6091_new	1	3	3	1	3	2	1	3	2	2
ACTGAGGTTCACTACC	alt_6091_new	1	2	1	0	3	2	6	1	0	3
CTTTGGAAGAAGGTCG	alt_6091_new	0	0	0	0	0	0	0	0	0	0
CTAGTGCGATCACCCT	alt_6091_new	21	21	28	21	27	19	31	21	14	19
GATAAATTATTGGGCA	alt_6091_new	2	2	0	2	3	2	0	0	5	2
GAACAAATAGATCGGT	alt_6091_new	31	37	39	41	27	29	20	29	31	22
TCAGGCCCACGTTTCT	alt_6091_new	1	5	1	2	4	6	3	1	2	7
GGCTCTTATGGGGCTC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
GTCACGGTACACCTAC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
AGGTCGCCGTTACCTC	alt_6091_new	10	20	6	13	23	7	21	5	14	5
ATAATACCGATACGGG	alt_6091_new	59	63	69	33	45	45	54	44	90	41
GTCGCTCCCTACGACT	alt_6091_new	21	36	24	41	57	18	51	21	63	21
TCGAGTTCAAATAGGC	alt_6091_new	50	58	82	39	38	45	55	33	74	36
TTGCCGGCCTCGCAGA	alt_6091_new	0	0	0	0	0	0	0	0	0	0
TCCGTAGCTTAGCTTA	alt_3143_fdr	106	66	146	121	56	117	81	100	77	123
ATCGCGTCCCTATCAA	alt_6091_new	0	0	0	0	0	0	0	0	0	0
TTGGAATCTACCCGGG	alt_6091_new	0	0	0	0	0	0	0	0	0	0
TACTCAGGTCCTTAAA	alt_6091_new	54	68	74	63	46	39	86	48	65	45
CTACATTTATCATAGT	alt_6091_new	0	0	0	0	0	0	0	0	0	0
GTCTATGTAACACTGC	alt_6091_new	27	30	24	18	25	25	29	13	28	17
TAGCCCACTCGGGTTC	alt_6091_new	23	26	31	17	46	13	41	15	41	18
TTTTTCGGACAGAGGT	alt_6091_new	22	28	27	12	25	15	34	12	25	16
TCTAAACTCAAAACTC	alt_6091_new	0	0	0	0	0	0	0	0	0	0
ACATGGCTAAATCGCC	alt_6091_new	3	11	13	12	8	6	9	10	10	10
GTGAGGCGCTCTATAG	alt_6091_new	26	44	34	19	30	27	43	20	37	18
GCACACACTGGTCGTA	alt_6091_new	8	2	9	6	8	4	9	9	3	5
TTTATTCGTCTACGTC	alt_6091_new	18	11	10	16	18	13	13	20	5	9
AGCAATTCCTCAAGGT	alt_6091_new	87	70	89	95	73	71	85	87	83	66
CGCTCGGTTGTTATGG	alt_6091_new	22	9	17	10	15	12	18	13	17	13
TGACCGAAGACGCATA	alt_6091_new	6	7	12	9	7	8	14	4	9	9
GTGATTTAGGGTTCTC	alt_6091_new	5	11	15	13	12	5	17	12	22	5
GATCAGACCCAAAAAT	alt_6091_new	5	13	11	23	20	8	17	12	16	14
CAGCACGCGCGTTGGA	alt_6091_new	3	4	5	5	2	6	10	5	7	2
CCTCAACTGGGTCGTC	ref_6091_new	52	51	61	41	36	48	64	40	59	41
TCCTATACATAGAGGC	alt_6091_new	13	14	23	11	15	13	20	13	15	8
AGGAAATTCAGGTTTG	alt_6091_new	74	89	91	69	81	105	96	80	98	71
ACCTGTTTGTCAGTCA	alt_6091_new	29	48	30	45	52	40	38	21	54	26
CCCTTTGCACTGCGCG	ref_3388_fdr	53	61	72	66	48	54	50	65	64	53
CGCCTCTTCTTCAACC	ref_3388_fdr	8	6	13	19	10	13	8	10	12	8
GCGTTCAGGTGCCGCC	ref_3388_fdr	49	32	54	42	45	55	43	42	31	31
TTCCTCGTATGGCCAT	ref_3388_fdr	78	60	88	81	86	60	46	77	74	64
GCGGTTATGAGTAATC	ref_3388_fdr	54	37	62	54	45	56	35	44	41	39
CTCCTAGTAGTAGTCG	ref_3388_fdr	95	123	146	127	106	109	138	111	128	109
AAAGTACCCAGCTTCG	ref_3388_fdr	1	4	5	5	4	6	3	10	3	2
TTGCCTCTGATATTTG	ref_3388_fdr	45	40	54	53	36	50	44	51	36	43
ACTCTGTAGCGTTCGT	ref_3388_fdr	43	75	60	41	70	48	74	54	55	43
ATCTGTCGATTTGGTT	ref_3388_fdr	21	23	22	19	10	14	17	18	11	17
ATTGTTAATAGGGCAG	ref_3388_fdr	204	188	277	241	182	205	174	216	201	222
GGCCTCAGTATTTTAC	ref_3388_fdr	17	14	14	13	10	11	9	6	9	11
TTAACTGATCTCTTTT	ref_3388_fdr	66	50	73	69	47	42	37	55	57	47
CATGACACCCCACTAG	ref_3388_fdr	35	32	44	26	20	16	15	30	27	35
GGTTTCCCGTGCAAAC	ref_3388_fdr	83	46	82	68	55	54	49	72	48	50
CTGCACCTGAAACATT	ref_3388_fdr	28	25	38	29	21	28	29	21	24	34
GCTCTGCCTATCGCTC	ref_3388_fdr	31	22	37	26	37	26	37	28	28	29
CGAATCAGCTTTCATA	ref_3388_fdr	23	15	17	19	11	20	15	27	24	18
TAGCATGGTGCTTTAG	ref_3388_fdr	76	65	116	77	91	96	94	101	86	98
CGTATAGTTCAGGCTT	ref_3388_fdr	56	40	59	54	39	38	37	50	38	38
GGGTATTGCACCGGTC	ref_3388_fdr	0	0	0	0	0	2	1	0	0	0
GGGTATTGCGCCGGTC	alt_3388_fdr	515	432	683	562	414	564	493	546	490	480
GTGCAAAAAATCGAAG	ref_3388_fdr	15	18	27	16	27	20	16	24	15	15
ACAGGGCGTTTCACTT	ref_3388_fdr	23	20	31	34	25	21	22	23	32	18
TCTACTCCGTAGTATT	ref_3388_fdr	19	14	16	24	21	6	17	12	13	9
GCTGCGAATGAGGAGT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGGCCTCGTATGG	ref_3388_fdr	79	70	78	71	77	71	80	74	68	72
GTCTGAGTGACCTTTG	ref_3388_fdr	55	48	71	47	36	43	36	37	46	40
TCCTCTTAGACCTGCA	ref_3388_fdr	24	25	43	25	24	22	25	27	30	28
ACACGTAGAGGCAATT	ref_3388_fdr	13	10	6	14	18	11	6	10	14	13
GTGTTCTAAAATCGCC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GTGCGTGAGTTAATTT	ref_3388_fdr	32	12	43	37	40	24	33	25	30	30
TGCCCGCCTTCGGATT	ref_3388_fdr	15	17	22	7	6	13	9	9	17	7
CCCACTACATGAAGCC	ref_3388_fdr	421	319	510	471	321	414	359	383	397	324
AAAGTTTAGATTTACT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
AGATAGGTGATTTAGA	ref_3388_fdr	75	65	105	84	45	52	52	81	45	68
TTGCTAAGCCATTTCT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTATCTATCTAG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GAATCCGGTACAATGT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GGAACAGTGAGCAACC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	1
TGAGCGCCCGTTCGGC	ref_3388_fdr	157	88	173	150	95	117	127	118	139	117
TGTGCGCGAAAACGTC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTCTTGGCCATAA	ref_3388_fdr	4	3	5	1	4	0	2	3	3	2
AATATTAACTCTCGAT	ref_3388_fdr	33	13	33	21	8	26	12	31	14	30
CCCGAGCTGCCCACCC	ref_3388_fdr	16	15	18	20	14	19	12	13	8	16
TTGCATCAATAGTTCA	alt_3388_fdr	75	72	82	69	54	52	53	73	74	77
ACTTCTGCCTTAAGCC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
CCGGAAAATGTGGGAA	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
AGGCATAGCTCAAGAC	ref_3388_fdr	69	45	104	84	66	67	82	66	73	75
TGCATAGCTTAGTGTA	ref_3388_fdr	50	27	49	33	27	37	40	28	28	26
TGTAGGTCGTCTCCTG	ref_3388_fdr	36	31	42	29	33	44	28	43	34	37
TCTTTTGTAGGCGCTT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GACTTGCGACCGAGCC	ref_3388_fdr	64	79	85	76	55	82	78	58	85	60
CGCATGTCTTGGGCCA	ref_3388_fdr	10	9	14	10	3	15	14	10	10	11
AGATAAGCTAGCTTGG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
CTCTAGTCCCGTCTGA	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GCATTAAACCACGCCC	ref_3388_fdr	31	50	55	38	39	25	38	37	39	45
TGGCCTGTATGTCGTG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCGCAAGCCTAGT	ref_3388_fdr	49	50	81	72	45	61	37	46	40	53
TGACATTTTAGTCTAC	ref_3388_fdr	8	13	23	11	4	13	15	10	11	15
TTTCGGAAGTGCACTG	ref_3388_fdr	65	71	105	75	53	97	73	70	69	63
AATCGTGTTCCTAACG	ref_3388_fdr	20	23	36	22	23	28	21	30	26	25
TATTAGTCGGGCACCT	ref_3388_fdr	22	17	16	14	12	9	14	20	13	12
TTATTTCTTGCTGTAT	ref_3388_fdr	224	177	294	256	184	203	192	227	185	253
AATACCATTGCTGGTT	ref_3388_fdr	27	29	44	44	30	35	23	34	35	30
ACTCTTAACAACCGCT	alt_3388_fdr	99	91	127	125	79	119	90	104	92	97
CTTAACTCGTGATCCG	alt_3388_fdr	240	201	258	223	213	220	217	225	216	203
CTCGTAGTCCGTGAGC	ref_3388_fdr	22	25	25	23	17	15	23	28	23	18
TCAATAGAACTCATCT	ref_3388_fdr	25	45	43	34	62	25	46	31	39	31
AAGTTTGTCCAGCTTT	ref_3388_fdr	53	59	60	65	39	51	41	68	43	48
CGGGCCGTGGTATCTG	ref_3388_fdr	42	28	43	25	22	30	18	26	25	31
TATAAGTGTCTCCAGC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTAGATCCCGCC	ref_3388_fdr	4	2	5	2	1	5	4	7	3	6
ATGGGTCAGCATTCAA	ref_3388_fdr	47	41	43	36	31	39	37	25	30	38
CAACGTTGACTTAGGT	ref_3388_fdr	22	22	35	18	20	22	20	15	19	21
TCGATAACAATCTATA	ref_3388_fdr	28	15	22	24	16	12	12	22	16	18
TACCTAATGAAATCTG	ref_3388_fdr	30	29	28	30	34	34	30	31	24	37
ATGTACATTCCTAGGC	ref_3388_fdr	28	33	31	19	33	31	34	21	41	24
GAAATTATGCTCCCAA	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GGACTTTACCACCTGT	ref_3388_fdr	34	30	52	51	51	43	34	26	50	46
TTTTAAAGGGCGTGTA	ref_3388_fdr	148	113	184	150	98	133	139	128	125	116
AACCTCTCTATCGACT	ref_3388_fdr	13	7	22	9	15	18	15	14	18	14
TTCTCTTTGGGATTCA	ref_3388_fdr	0	4	0	2	0	0	0	0	0	0
ATTATACCCGTGCCCA	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GAACCATAAGCTGGGA	ref_3388_fdr	37	21	41	34	23	38	23	28	25	34
TTTTGTTATTCGCTTG	ref_3388_fdr	11	8	6	8	8	12	9	10	5	11
CATTCTCTAGCGCTGG	ref_3388_fdr	39	41	57	58	41	40	35	46	37	32
GAAAGTTTCGTTTAAT	ref_3388_fdr	6	19	18	8	18	32	13	16	19	16
CTGCTTAGGCCGACCA	ref_3388_fdr	15	13	27	25	19	31	27	23	18	14
TTCATAGTGCTTATTC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAGAGAACGTTGT	ref_3388_fdr	214	165	208	229	152	177	185	193	145	168
GGTACTCACAATGCCG	ref_3388_fdr	75	62	91	80	42	68	71	66	58	63
GATTAGTACGTGTGTA	ref_3388_fdr	35	38	37	35	27	38	28	34	34	32
ACGGACTGTGGGAGGG	ref_3388_fdr	3	2	5	3	11	11	4	5	7	6
ACCCTGTTATACGTTT	ref_3388_fdr	41	35	51	55	30	34	34	30	47	23
TTCTATCAGCGAACTC	ref_3388_fdr	14	16	20	8	19	17	16	14	16	24
GTGGGCTTCATGACGC	ref_3388_fdr	55	44	87	69	35	62	48	36	48	59
TGTGACCTAGGGTGAT	ref_3388_fdr	192	156	247	234	181	173	187	177	175	177
TCTGGACGATCCGGCG	ref_3388_fdr	47	38	68	50	42	56	39	50	63	43
AAAGTATACTCCCTTG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTCAAAAGTTTTT	ref_3388_fdr	11	6	8	4	13	5	17	10	14	10
AGTCGCTTTACTTATC	ref_3388_fdr	131	138	175	132	148	135	132	136	139	125
GCTTGCGTCTAGAACA	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GATTCTACTCATTTGG	ref_3388_fdr	18	27	22	27	23	18	26	21	29	20
TTCAATCGTATTGTGG	ref_3388_fdr	60	55	77	51	29	61	24	53	50	54
TCACCCGTGTAATCCA	ref_3388_fdr	24	43	33	25	40	22	41	32	36	17
CCGGTACAGTTCCTGA	ref_3388_fdr	14	18	19	25	42	11	23	13	27	13
GTCAAGTCCGAGTCCG	ref_3388_fdr	63	53	92	72	49	60	37	55	40	61
CGCAGGTTTTCACCCT	ref_3388_fdr	57	72	107	76	59	74	77	76	63	66
ATAGTTTAGATTTACT	ref_3388_fdr	265	250	338	330	208	259	279	285	293	280
GCGCCATGATGCCTCT	ref_3388_fdr	452	282	553	396	314	424	281	423	280	389
GCTTCGACCATTTTCC	ref_3388_fdr	44	36	49	35	41	49	36	39	39	30
GGCCGACAGTGCAATC	ref_3388_fdr	22	28	28	29	34	25	27	25	26	23
TCGCCGGTATTCGTAA	ref_3388_fdr	3	5	5	9	13	9	8	6	4	2
CCTCTCGGTAGGACTT	alt_3388_fdr	93	73	93	100	60	79	64	89	51	64
GATCCTCTGTTGGGTA	ref_3388_fdr	30	20	34	38	29	37	35	32	28	35
CGTAACATCGCGCCTG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTGGTCGTGACAA	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TCACATTTTCGACCGC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
ACGTCTGGATTCTGTG	ref_3388_fdr	63	47	62	49	45	48	66	47	55	55
CGCGGATCAGCAGTCG	ref_3388_fdr	39	25	33	34	25	27	26	35	19	28
CTTATGACATATCGTT	ref_3388_fdr	187	119	222	198	180	175	196	159	154	173
GTGTTCCGGGAGTGTC	ref_3388_fdr	20	25	35	31	19	21	24	24	20	20
TTATGTCCTCTTCGAT	ref_3388_fdr	85	66	123	94	73	104	68	75	67	78
AAGAACACGTGTTAAG	ref_3388_fdr	114	88	90	111	92	86	111	110	91	80
CCGAACCGTATTCTCC	ref_3388_fdr	50	43	50	61	44	47	72	47	73	57
CGGTGGTAGGGTGAAG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGTCGGAGTTAGT	ref_3388_fdr	19	7	21	25	8	13	15	7	11	15
ACATTTCGGTAATCGC	ref_3388_fdr	40	34	70	47	40	43	41	44	27	46
ATTTCATCGGTCCCCA	ref_3388_fdr	15	13	19	27	17	14	14	11	26	17
CTCAATGGCGCCGTTC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGTGACAGCTGGC	ref_3388_fdr	37	37	53	43	26	34	33	44	34	32
CTTTTGTCCGTTCATG	ref_3388_fdr	28	39	35	36	39	26	43	34	34	28
TAGCTCGACCACGTGG	ref_3388_fdr	71	37	93	69	25	62	35	50	48	44
GCGATAGGCCTTCGTG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
AAACGCGACGCACGGC	ref_3388_fdr	42	27	51	46	32	35	20	29	28	35
TACCACCTCGCCTGAA	ref_3388_fdr	4	3	5	6	3	2	2	7	5	2
CCATTCGGCCTTACAT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATGTACATTTAG	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
CGCAAGGTCTTTTGGT	ref_3388_fdr	46	31	42	39	42	43	42	36	27	35
TTACTACTTACATTCT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
CGTAGGTCGAACGTGA	ref_3388_fdr	11	19	12	11	17	16	6	11	11	8
TGATTAAGCCGCCTAG	ref_3388_fdr	37	33	71	44	55	51	35	39	61	40
GTATGGTCACTTGGGA	alt_3388_fdr	253	261	335	237	216	248	237	238	279	238
CTAACTTATCGGCCGA	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTACTTATGATG	ref_3388_fdr	30	24	36	27	32	41	17	23	23	38
GCGTATTAGAATGTGA	ref_3388_fdr	16	13	21	16	13	9	12	15	15	20
ACCGATTTCGTCTGTA	ref_3388_fdr	11	15	3	5	18	8	22	12	11	9
AGTGGGGATGCAGAGT	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
CGCCAGCAATTGCATG	ref_3388_fdr	23	18	29	34	28	24	26	21	26	28
CTCACCTAAATGCCCC	alt_3388_fdr	19	18	29	26	15	16	13	15	24	25
CGTTGACCGACCAGGA	ref_3388_fdr	166	153	201	179	171	168	176	191	198	148
CTCACACTTGACCACC	ref_3388_fdr	99	87	133	103	79	90	102	101	100	80
TCTATGTACTTCCCAC	ref_3388_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTCTCGCCGCTCC	ref_3388_fdr	19	20	30	26	14	22	19	27	18	15
CAGCGTCTGCCAGACC	alt_4553_reverse	1	4	1	0	2	1	6	0	3	0
CGTCGCATGCGTCCTA	alt_4553_reverse	12	39	16	17	27	16	50	18	27	20
TAGACTCAACTTGGAG	alt_4553_reverse	107	246	130	100	222	116	275	89	254	89
CACGGCAGGTTTGGGA	alt_4553_reverse	3	5	2	1	4	1	11	5	6	2
GGGCAACGCCTCACTG	alt_4553_reverse	22	44	34	23	42	16	46	15	50	25
GGCGTTTGAGTTCTCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CATTTCGAAGCACAGA	alt_4553_reverse	29	61	37	28	66	28	77	35	59	23
TTCATACTCCAATTGG	alt_4553_reverse	2	10	11	10	10	6	15	4	8	6
ATCGCCGGCACGTCGT	alt_4553_reverse	12	24	11	13	31	7	26	6	27	11
CGCGGATCTTTGCGTC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGCTCAAAGGTAT	alt_4553_reverse	14	36	20	16	33	16	33	14	32	10
TCAGTCCTCGCCTTCC	alt_4553_reverse	56	67	40	46	67	42	72	36	76	43
GACCCACGCCAAGGAT	alt_4553_reverse	37	55	45	32	74	23	65	40	69	37
ACATCTAACGTGACGG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ACGCATTATGATTCTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GGAGACCGCCCAGCGT	alt_4553_reverse	15	14	19	13	24	16	17	11	17	8
CAAAGCGTTACTGATC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GCTTAGTGGGGAGACC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTAACTCTCTTTAGGT	alt_4553_reverse	10	12	7	6	19	8	19	14	15	5
CGGCAGCTTTTATAAA	alt_4553_reverse	12	16	11	9	10	11	19	9	13	11
CATTTCTGATGTACCT	alt_4553_reverse	6	11	15	7	22	17	16	11	16	8
AATGAGAATTAAAAAA	alt_4553_reverse	22	24	16	12	18	8	17	10	28	14
CGCCGGCCTCGCTTAC	alt_4553_reverse	3	9	2	0	7	1	11	7	7	7
CCTGATCCCAGCTTGT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGTTGCTTAGATC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
AACTCGAAACGAGATT	alt_4553_reverse	10	16	11	14	17	15	19	8	10	15
GTCCGGACACTACAAC	alt_4553_reverse	7	15	9	11	14	6	14	5	9	5
GCTTTCGTCCGCGCAT	alt_4553_reverse	13	23	15	13	26	13	26	12	31	15
CGCTTTTGCTGACATG	alt_4553_reverse	27	41	41	27	52	26	49	29	44	14
TATTCTATACTACTTA	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAGGCGAGCACTA	alt_4553_reverse	11	48	14	17	53	12	52	11	65	11
ATTTCTTTGAGTATCC	alt_4553_reverse	18	23	16	12	25	19	32	14	39	21
GTCGGGGGACACGATA	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GATGCTTGGTTTCGCA	alt_4553_reverse	12	27	14	15	23	10	21	12	28	13
CGCTATCGTCCATCAA	alt_4553_reverse	36	47	29	28	45	23	52	25	67	23
TGCCACCTCGGTATCC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTTCGCGGTTTG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TGCGATTAGCCTTTTG	alt_4553_reverse	27	53	37	18	47	27	48	16	62	18
GGGACGCCATGGTGGT	alt_4553_reverse	26	33	32	22	25	26	21	22	28	15
TAGAAGACCTCAGACA	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CAACTTAGGAGCGCGC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTATTTAGTATGTCAT	alt_4553_reverse	19	58	27	14	61	22	49	23	55	22
GGCGCCGATCGTGTCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CATTGGTCGCCTCTCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCAGTTTTTAAAC	alt_4553_reverse	16	42	24	10	32	7	42	16	42	9
TTCTGTGATCTGCCGT	alt_4553_reverse	8	15	6	11	12	10	13	5	24	7
GATGTCCTCAAATCCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTTTGGCGAGTTG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CACCCTTAGCCCAGTT	alt_4553_reverse	4	12	8	7	9	5	9	4	14	5
CCTAGGGAGCTGGGTG	alt_4553_reverse	2	0	0	2	1	2	7	2	1	2
AACTGTTGTCGGACTG	alt_4553_reverse	18	28	16	14	37	9	30	16	33	18
TATGCCCCGAGTTGAA	alt_4553_reverse	1	4	1	2	3	1	7	3	6	2
TTGTTGGTTCGATTCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CTTATGAGGGGGTGCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCTTCCCCGGCGG	alt_4553_reverse	2	2	2	2	4	0	0	2	5	0
TAGATTTACATAAGGG	alt_4553_reverse	11	27	8	16	27	9	32	8	24	5
ACCGTTCTGTTCTAAT	alt_4553_reverse	36	100	39	33	83	32	90	36	98	41
GCTTTGAGGTCTTCTA	alt_4553_reverse	38	52	39	34	67	34	66	22	64	36
TATTCATAAGGCATAA	alt_4553_reverse	13	27	19	12	31	4	38	10	21	19
GGACTAGACGTTTGTG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCAAGCATGAGCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGATCTGATGTGT	alt_4553_reverse	8	17	3	3	14	1	23	2	17	3
TAGACATCGTCATTTC	alt_4553_reverse	19	38	23	19	27	21	34	20	25	20
CGCGTTGCTATTTGCT	alt_4553_reverse	16	32	31	21	43	24	26	15	57	21
CGATCGCTTTCTTGTA	alt_4553_reverse	2	10	1	2	17	2	8	1	9	1
TCAACTTCGACGTACC	alt_4553_reverse	1	1	0	0	2	0	2	1	4	0
CGATGAGCCGCTTCTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TATCACCTTGTTGCGG	alt_4553_reverse	6	20	6	12	18	10	17	14	19	6
TGGACGTTCTCAACTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GACCCGATTGCTTGAC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GCACAGGAAATACGAG	alt_4553_reverse	3	3	2	4	16	6	11	5	12	9
TACCGCTTTTAGAGGA	alt_4553_reverse	8	19	14	9	29	10	37	10	25	15
CCCCATTGAGAGGGGT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGGCACTTTGGTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TATCTTACTGTTGCCT	alt_4553_reverse	0	0	2	3	4	2	4	1	4	2
TAATCCGCTATAACTG	alt_4553_reverse	41	80	57	42	62	39	91	38	75	45
TTCTAAACTGTGGGGG	alt_4553_reverse	45	111	78	53	149	54	90	56	116	50
ATCGGCCACTAGAGCT	alt_4553_reverse	24	43	46	24	42	21	69	32	50	15
CCAAATCCGGAGGATC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TACTCGATCCTTTATC	alt_4553_reverse	6	7	13	12	16	14	13	5	8	12
GCTCGATACCTGAATC	alt_4553_reverse	21	45	22	15	43	23	33	14	41	14
GGGTTTTTGGTTTGAA	alt_4553_reverse	1	6	3	2	11	3	5	3	7	4
GAATGGGGCCGATTTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
AACCGTATCATGTTTA	alt_4553_reverse	12	38	22	14	33	21	42	20	33	14
TGATTATTCATTGTCT	alt_4553_reverse	18	29	23	19	16	17	25	10	30	6
TTGTGCCCGGCTTAGG	alt_4553_reverse	12	17	15	10	19	5	28	8	15	11
AGGACCATTAACTAAT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TTAGAGCCAATTGGTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GACGTGAGATCGGGCC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ACCGGTTCACACCCCT	alt_4553_reverse	22	57	29	29	74	22	45	21	76	26
GTGCAAAGGCCTACCT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAGTGCTGCTTAT	alt_4553_reverse	93	144	97	84	168	84	150	90	145	81
TTTGCTCTCACTTTAC	alt_4553_reverse	8	8	11	4	17	5	12	7	13	3
AATTTGCAACTGCCTC	alt_4553_reverse	12	26	22	18	27	12	31	15	25	14
CAAATCCAATGCCGGC	alt_4553_reverse	15	35	9	13	21	14	22	16	25	17
GTCTCCCACGTTTGTC	alt_4553_reverse	2	5	3	2	11	1	12	0	15	1
GCAGTTTGGTCGAGTG	alt_4553_reverse	20	48	25	16	33	19	52	11	40	9
CCTTCCGATTTAATTT	alt_4553_reverse	10	25	7	16	20	10	28	13	32	11
TCTTGTTCGAAGTAGC	alt_4553_reverse	5	13	11	4	7	9	23	4	17	8
AGGATTATAACTTAAA	alt_4553_reverse	28	33	16	25	35	16	33	16	44	22
AAGGTCACCAATGTGC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTTGACCACTTGC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TTATTCTTTTGCGCAA	alt_4553_reverse	2	10	1	6	6	2	12	5	16	2
TCAGAGACGAGTCAAA	alt_4553_reverse	9	26	15	16	29	14	28	18	25	12
AAGTACGTGAAATTAT	alt_4553_reverse	1	1	0	0	3	0	0	0	1	2
ACGTGTGCTTAGTTGT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TACGCCCGTATTCGCA	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ACCCACATTCTCTGTC	alt_4553_reverse	14	47	17	17	40	20	37	13	29	12
GGCCCTAGTAGACCGT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
ACGGAACGACAGATTG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACGAGGTCATTT	alt_4553_reverse	17	61	27	17	63	21	74	18	72	16
CATCTACGTTGGGCGA	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTCTAGGTACGGA	alt_4553_reverse	2	7	6	4	6	1	3	2	2	4
TGTGATCCATATGCGT	alt_4553_reverse	3	6	3	3	5	2	9	1	9	5
ATACTTCTCCAGGCCA	alt_4553_reverse	3	7	8	7	16	9	13	8	14	6
GCAGACTCTCTCTTCA	alt_4553_reverse	22	41	22	13	46	29	57	13	51	26
GGTATTAAGCTCACGG	alt_4553_reverse	8	23	11	13	14	9	27	9	12	4
TCCCTGTGGGGACAAC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGTGGTCTCCCTA	alt_4553_reverse	0	6	1	2	10	2	5	1	6	1
TCTTGACCCTTAACAG	alt_4553_reverse	0	6	3	3	5	6	3	9	12	1
GCGCTCCACAGTCGAA	alt_4553_reverse	24	38	20	23	53	16	46	18	49	21
CCTGTATCGTACTCAA	alt_4553_reverse	2	3	0	0	0	3	3	2	3	0
CGGTAGACCGGTATTC	alt_4553_reverse	11	46	19	20	45	7	54	12	43	20
GTCTTTGCTGTTGTTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTACTATAGTCTT	alt_4553_reverse	4	6	0	0	5	4	3	2	4	1
TTGAGTTATGCTCACT	alt_4553_reverse	28	41	33	25	58	14	52	26	55	21
ATTGAGCATATGAAAG	alt_4553_reverse	15	31	14	9	31	17	26	15	28	7
TAGACTGACACTGCAG	alt_4553_reverse	10	26	15	8	22	6	23	11	29	6
GTTAATAACATGTTTA	alt_4553_reverse	36	41	23	20	43	20	35	23	57	22
GCATTCCATTGACATC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CATAACCTGTAGTAGC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
AGGCACTGATCGAGTG	alt_4553_reverse	16	45	25	28	35	15	54	21	58	14
CGCTTTAACTGCCTCG	alt_4553_reverse	115	194	154	86	203	100	181	88	207	103
TATCCACAGGTTACCT	alt_4553_reverse	10	17	11	6	19	9	14	3	18	4
CAGGTGCCAACCCCGC	alt_4553_reverse	2	2	3	1	3	2	5	2	4	0
ATCTGGCCCCTGCGTG	alt_4553_reverse	3	11	6	5	7	5	11	2	9	0
AGTCACTTATCGATCA	alt_4553_reverse	19	35	14	14	36	9	44	14	38	12
CGCACTGGAGAGCGCA	alt_4553_reverse	7	27	15	9	6	12	9	5	18	10
GCAAATTAACGTCTGA	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTGCGTACCGTAG	alt_4553_reverse	1	9	1	4	11	2	13	1	13	2
TGACTGATAGGACCCA	alt_4553_reverse	36	51	28	16	41	28	37	27	48	20
GATCACGTTTCAGGAA	alt_4553_reverse	4	21	10	10	8	6	20	8	18	8
CTTTGTGACCAGTGTT	alt_4553_reverse	16	33	20	9	45	18	47	11	61	10
GAATTGGAGAAAAAAA	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGTTGACCAGCGC	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGGCCTTTAGTG	alt_4553_reverse	16	41	27	17	43	18	55	20	49	16
CCTACTGGCCAGTCTT	alt_4553_reverse	15	67	13	10	57	11	55	12	61	7
TGCATGGTTAGAAGCT	alt_4553_reverse	9	7	11	3	8	3	8	4	4	3
TTGGCGTTTTTCTCCT	alt_4553_reverse	5	8	6	6	13	3	14	5	8	8
GTGGGCTCCATCCCTA	alt_4553_reverse	5	17	4	7	8	4	16	4	8	1
GGCGCCGCGCGTCGTC	alt_4553_reverse	19	17	19	15	28	13	20	14	27	18
AAAATGCCTGTGAATA	alt_4553_reverse	1	3	2	0	1	2	8	1	5	3
AGGCCTACGTACTCAG	alt_4553_reverse	5	9	2	6	5	2	10	9	9	4
CGGACATGAGGAGACC	alt_4553_reverse	27	37	28	20	44	26	39	28	65	14
GGTCATTATATGATTT	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCCTTTATTGGCC	alt_4553_reverse	6	25	7	6	29	11	26	2	44	6
CGAAACTGGCGTATGA	alt_4553_reverse	6	12	6	4	7	3	6	9	13	3
CCTGCTCACCCAGAGT	alt_4553_reverse	1	3	5	1	9	4	3	5	12	5
TGCGGTTGCAAGCTTC	alt_4553_reverse	1	2	2	3	8	3	7	0	8	0
GTAGCTCTGTAAGATT	alt_4553_reverse	33	32	36	33	47	23	51	17	44	23
AAGGGTGTCCTAAGGG	alt_4553_reverse	22	30	28	13	39	20	43	15	34	14
GCAACATCTCCAATGA	alt_4553_reverse	14	32	18	19	34	20	26	15	20	10
GTTTGTGGCGAGACCC	alt_4553_reverse	14	38	17	31	58	20	44	17	45	12
TTTACGGTTTGTCTTT	alt_4553_reverse	24	39	31	17	35	22	27	18	47	21
TCCTTTGTTCGCGCCT	alt_4553_reverse	10	37	8	6	46	7	35	6	44	3
GAAATGTCTAGAACAG	alt_4553_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGACACGAGTGCG	alt_3746_upstream	26	21	10	11	17	14	16	12	12	23
CTTCTTTGAACTGTGT	alt_3746_upstream	4	3	8	3	17	5	12	2	11	8
CTCTGTGCCCCTATTT	alt_3746_upstream	46	66	43	32	84	32	79	36	66	43
CCTTCCGTTTCATTAG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
ATGTACTCGTACAGCC	alt_3746_upstream	41	90	64	77	130	42	97	61	94	45
CGTGCAACGGATTCGA	alt_3746_upstream	48	92	81	72	103	59	89	65	122	44
GCCTTCTAGTAGATTT	alt_3746_upstream	73	107	77	81	89	87	113	83	107	66
CCCAGTGTAAACCTTC	alt_3746_upstream	28	74	36	23	74	20	60	24	63	29
GTCGTAATCATGTGCG	alt_3746_upstream	5	6	8	3	9	5	6	5	9	4
ACTGAGTATGTGACCG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTATTGATGAAAC	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGCCGGGGCTCCG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGCATCTATTGA	alt_3746_upstream	7	6	7	4	6	5	4	3	6	10
TCGATGCTTTTCGTGT	ref_3746_upstream	42	77	55	36	67	43	63	34	51	39
GGGAGAGCCATAGTGG	alt_3746_upstream	214	231	239	201	268	197	256	209	268	188
AGCTAGGGTCTGTTGG	alt_3746_upstream	16	37	23	27	33	27	47	25	36	23
TCTGCCGTCATGTTCG	alt_3746_upstream	29	27	32	13	51	20	46	25	36	21
TTCAGCGCCAGTTTAT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGTACTATCCCT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGAGTAACGACGC	alt_3746_upstream	38	36	61	37	49	29	44	38	52	15
TTTGTAACAACTCTGC	alt_3746_upstream	8	6	12	10	5	5	7	4	12	7
GAGCTCATACAAATAT	alt_3746_upstream	46	33	49	28	47	32	38	33	42	44
GTATTCAGGCGTTAAC	alt_3746_upstream	1	12	8	3	6	8	10	10	8	10
ATGATACTGGGGGTGA	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CGCATTTGGTTCAAAT	alt_3746_upstream	35	90	51	59	79	56	93	50	81	55
CCGCTTGGTGACATGT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAGCACGTTTCCA	alt_3746_upstream	22	12	27	24	33	19	25	18	22	9
TCCCCCCGTTGGTAAA	alt_3746_upstream	6	17	6	4	20	9	23	5	25	4
CGGCATTCCTGATACA	alt_3746_upstream	39	40	43	30	64	40	48	36	41	20
CGTGTCGAAAGTTATC	alt_3746_upstream	28	46	37	28	41	40	64	28	53	23
TATCTCGTCCACCCAC	alt_3746_upstream	9	13	10	7	11	6	18	7	11	8
TTACAAAAGATAGCCT	alt_3746_upstream	33	50	57	44	73	36	38	36	53	42
ATACGGTCCAATGAGT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCGGCCTATTGCC	alt_3746_upstream	4	13	7	5	13	8	12	0	18	7
TGTCAGTATCGGCAAT	alt_3746_upstream	40	34	41	21	49	27	37	26	44	26
CCTACTAAACAGTACG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TTGCAAGGCCCTTTGT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCTTCTTACTGGA	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
ACGATCCCCGGTTTAT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTCATTAGGCTCG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CGATAATTCCGTCAGT	alt_3746_upstream	65	74	84	66	103	90	67	59	115	55
CCTCCCATTCTATAAG	alt_3746_upstream	6	14	10	2	7	4	12	7	5	1
AGCGTTACTGCATCTC	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTTCTACTTTAT	ref_3746_upstream	283	436	396	296	428	286	497	294	465	247
ATGGGCCTTTACGAAA	alt_3746_upstream	16	23	22	18	24	16	27	10	28	16
GCAACAGTGCGAGGTA	alt_3746_upstream	77	89	94	67	100	93	100	74	118	61
ATGTTTGTAAGCAGTA	alt_3746_upstream	73	91	73	51	97	74	80	55	97	57
TTTGAGGCCTGCAGCC	alt_3746_upstream	17	29	30	35	20	20	32	26	28	16
TAATTGGTCGTCAGTT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GACTTGACCAGCAGGC	alt_3746_upstream	5	6	6	7	8	4	11	8	5	3
TACTATCTGACCCAGA	alt_3746_upstream	106	189	139	130	145	139	191	75	172	100
TTTTCCCAATGTATAT	alt_3746_upstream	16	23	32	37	15	13	27	30	21	14
CGTCCGGTCGTCCAAT	alt_3746_upstream	60	95	77	61	74	60	79	46	88	50
TGGGAGGTCCGGGGGC	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGTATGAACTTTC	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATCCCGCTGTAC	alt_3746_upstream	15	27	19	18	22	17	33	22	36	13
CACTTAATCCTGTTGG	alt_3746_upstream	28	31	23	17	47	23	32	23	22	25
GTGAAGCGTGGGATTA	alt_3746_upstream	38	54	65	32	59	39	52	46	62	30
GAAATTCCGCAATTGG	alt_3746_upstream	102	109	99	78	105	98	102	58	104	63
AATTAAAGATGGTTGG	alt_3746_upstream	61	55	81	63	71	43	63	53	63	61
ATCGCGTCTGTTAAGT	alt_3746_upstream	87	136	100	86	151	93	143	81	134	69
ATTGGTTTGCCCCCTA	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TATTAAAGGGACTTTT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CAGCAAACGGACCCGT	alt_3746_upstream	77	103	109	84	130	80	107	70	125	95
CCGTCCTCGACGTGCC	alt_3746_upstream	3	10	2	1	7	3	13	5	16	2
TCTTAATGCCCTGTTG	ref_3746_upstream	12	24	13	7	16	10	25	15	26	9
GGTTGCAGTTACCAGG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTTGCTTTAGACG	alt_3746_upstream	11	11	5	13	12	4	10	6	18	6
GAAAGGACTAACCATT	alt_3746_upstream	0	1	0	1	1	0	2	2	0	0
ATACCGCTTTCAAGAT	alt_3746_upstream	34	53	37	32	61	30	55	34	51	41
AACATTCGCTTGCGGG	alt_3746_upstream	25	40	20	24	34	27	33	25	31	25
AGCATTCCATAAACCG	alt_3746_upstream	22	38	34	15	25	18	37	21	35	16
TCCTCCTAGCTGCCCT	alt_3746_upstream	23	41	29	28	39	25	34	20	25	22
TAACCGACAACGATTA	ref_3746_upstream	26	51	37	38	74	27	57	26	46	25
GCGGATCGTTGGCACC	alt_3746_upstream	9	14	10	14	15	15	19	10	20	12
TCGGACCGGGTGTACG	alt_3746_upstream	27	35	31	33	52	23	41	26	49	34
ATCCCCCTCGTACGTG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGCCTTCTCTCCT	ref_3746_upstream	60	90	59	56	99	49	118	35	99	43
TATGTCCATTCCAGCC	alt_3746_upstream	11	16	9	19	17	8	18	18	15	20
CTTCTTCATCTTTGAC	alt_3746_upstream	4	3	2	6	1	1	7	3	3	6
TCCTGTTCTCTAGATG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CACCTGGACCAATCCG	alt_3746_upstream	19	19	18	16	20	16	19	6	22	18
ACATTGTGTTCTTACC	alt_3746_upstream	24	48	32	19	51	21	72	19	50	14
CTCGAAGGCTGGTTAA	ref_3746_upstream	71	104	117	87	120	91	132	73	120	73
AGCGCTACTCGATGAC	alt_3746_upstream	24	34	35	15	24	32	27	18	28	23
TCTTCCTTATAGGCGC	ref_3746_upstream	25	33	27	20	29	18	43	33	34	18
GCCACTTGTTTATGTA	alt_3746_upstream	10	11	15	5	23	11	19	9	22	3
TATCAAAGCGGTGAGC	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TGAAATCATCCTCTAA	alt_3746_upstream	71	80	91	73	104	75	89	78	131	78
ATCAATTATAAAGTGT	alt_3746_upstream	35	38	32	39	51	23	44	22	41	28
TTCCTCCCTCTTAAGG	ref_3746_upstream	2	6	0	1	10	3	2	2	9	1
GTTCATGGTATCTCGG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CGGAAAAATTGTTTCT	alt_3746_upstream	65	89	64	69	105	64	87	55	76	39
GAACTCGTGTATACGC	alt_3746_upstream	14	22	22	22	39	16	37	6	25	11
TTATTGTGCACCCAGG	alt_3746_upstream	15	41	33	19	31	24	32	20	43	28
TACGCACATCCCGAGG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTTTAAAAGGGCT	alt_3746_upstream	29	45	54	52	60	39	65	38	50	36
TTCATCCGGGCAACCC	alt_3746_upstream	72	131	107	90	123	93	128	82	142	95
TTAGTTCCCATGATAG	alt_3746_upstream	38	48	44	44	37	31	53	33	47	29
GCCTAGGATTTTTCGG	alt_3746_upstream	42	65	55	56	60	41	61	41	56	37
TCTGCGCGGTTTTTTA	alt_3746_upstream	54	58	67	70	71	45	74	50	64	50
TATTTTACGCTTTGAA	alt_3746_upstream	52	80	66	71	78	55	73	59	81	49
CAAAAGCGGTGGTGTA	alt_3746_upstream	68	85	68	51	75	46	69	52	72	37
TTGCAGTGGCGGTGAC	alt_3746_upstream	8	9	14	12	5	11	13	7	12	10
ATATAATGTGCGCCCA	alt_3746_upstream	21	25	25	13	17	15	26	26	32	27
ACGTTCGCAGCATCTA	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TACACCGCGGTTTAGG	alt_3746_upstream	0	3	2	2	2	2	3	3	2	2
CAGGAACAGAACCATC	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGTGCGTCGATGC	alt_3746_upstream	48	45	62	45	48	27	43	23	57	25
ATAACCAAGTGTCGGG	alt_3746_upstream	37	58	54	39	72	28	51	32	36	48
CGAGCGGACAAATAGT	alt_3746_upstream	20	16	24	13	20	18	29	23	30	14
AACGCCTATGCGTTTC	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GCTACTGTAAACAATA	alt_3746_upstream	7	15	19	13	21	12	20	10	16	13
TTGGAGCGTCATGGGT	alt_3746_upstream	72	82	94	66	92	61	91	71	96	52
ATTCCGTTGATATGAG	alt_3746_upstream	23	29	33	40	35	19	26	33	42	18
GGCGTCCTGATGAGTG	alt_3746_upstream	2	1	2	3	1	1	5	4	6	3
CTGCAAATGATGAGCT	alt_3746_upstream	83	100	84	69	96	65	92	60	85	79
CAGCACTTGTACCGGG	alt_3746_upstream	52	76	65	54	111	49	79	44	70	34
TTCACTCTGTGCGTCT	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
GCTACCCCGTTTTATC	alt_3746_upstream	19	55	25	23	74	18	47	12	59	14
GTTGGTAAACCTAGGT	alt_3746_upstream	91	107	118	110	132	83	122	103	132	102
CCCAGCGTACAACGAC	alt_3746_upstream	16	20	22	21	27	25	37	11	23	15
GTCTATTTCATGACAT	alt_3746_upstream	18	23	30	17	18	21	24	16	24	16
ACACGCATCTTGCAGA	alt_3746_upstream	28	42	47	29	33	27	35	20	29	15
GATTATATGAGAACAG	alt_3746_upstream	35	63	52	40	66	43	76	33	61	40
AATTAGCACAAAGATA	alt_3746_upstream	56	67	60	65	79	46	78	53	95	50
GTATAGAAGTCTTTGC	alt_3746_upstream	22	43	29	29	48	28	32	20	47	19
CTGTTAATGCGAGCTC	alt_3746_upstream	9	17	7	13	14	8	16	8	18	10
ACTACGAAAGGCCGAC	alt_3746_upstream	53	73	53	50	93	46	82	50	77	42
ACTCCAGCGTTCTACC	alt_3746_upstream	52	91	76	63	98	44	93	55	93	54
GACTACCCCTCTGTAC	ref_3746_upstream	22	56	16	32	63	14	76	9	57	13
TTCGCAATCGGCTTTG	alt_3746_upstream	113	122	145	98	103	99	104	87	132	88
CAGTTTTTTCGAGAAG	alt_3746_upstream	1	5	1	3	6	3	2	2	8	6
TTTTTGAAGGCATTAG	alt_3746_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTGGGCCTTCCGG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TGTTCCCCTTATCTTG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
CCAGCCACTACGTTAA	alt_6028_new	4	5	2	2	6	0	7	2	11	5
CTTAATATCTCGGTTG	ref_6028_new	3	5	3	2	0	2	7	0	6	3
TCTAATTGCTACGCGG	alt_6028_new	10	8	4	9	7	5	4	6	1	8
CTGTGTATGGTAGCAC	ref_6028_new	60	88	91	99	100	77	97	71	88	63
GCTTCAGTCGTTAAAT	alt_6028_new	32	58	28	38	43	23	43	25	42	23
CATGATTCCAGATGCC	alt_6028_new	10	16	16	23	9	12	7	14	13	8
AGTGTCATGTGATTTG	alt_6028_new	69	75	94	88	73	79	74	88	75	82
TATCGGGACCAAGCCT	alt_6028_new	48	43	46	27	45	53	39	44	63	37
GGGGGTTCAATTGCCC	alt_6028_new	28	33	38	29	34	35	38	28	39	28
GTGTGGCCGTAAAATT	alt_6028_new	0	7	7	4	3	6	4	4	6	2
GGCTTGGTTAGTTCTT	alt_6028_new	278	317	322	315	299	311	332	271	353	254
GTATCACTGAATATTA	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TCTGGACCTGGGCGTA	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GACAGAACACTGAGTG	alt_6028_new	3	8	6	3	3	5	1	4	4	11
TAAATCCTGCTATTCA	alt_6028_new	0	0	0	0	0	0	0	0	0	0
CTAGGGTGGTCTACAC	alt_6028_new	64	52	75	55	53	47	47	62	76	51
GGTATCGGGTAACATG	alt_6028_new	114	114	146	110	128	109	120	109	125	108
CATGCTCGTGGAAGAG	alt_6028_new	12	20	16	13	19	9	13	14	17	9
AGTATAACAACTGGCC	alt_6028_new	20	15	30	20	30	16	26	30	21	28
CCTGAGTTTTGGTCGG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TTTTCGTGCATAGTGA	alt_6028_new	46	65	61	28	50	47	83	39	78	49
CATTAAAGCTCCACGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TTTTACCGGTAGTGGA	alt_6028_new	27	31	38	30	36	34	30	31	27	25
CCGGAACGGCGTTCGG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TCTGTCTTGTTGTGAG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GATAATTGTCTGCTTC	alt_6028_new	17	13	24	16	8	20	23	10	21	17
TAATAAAGCGCCAAGT	alt_6028_new	16	14	14	18	6	20	9	15	5	12
ACCGACGTTCGGATTT	alt_6028_new	113	149	156	104	154	121	145	114	171	103
TTGGACTAGGATAAAC	alt_6028_new	14	16	28	29	19	26	25	24	15	18
GACCCGGCGCTCTATT	alt_6028_new	81	100	126	119	95	104	107	68	118	97
AGGACCCATTGTCAGT	alt_6028_new	16	18	17	14	15	14	18	13	18	7
TTAACTCAGCGGGTGT	alt_6028_new	28	33	27	34	38	30	29	38	27	26
GCCTGCGCTCGTGAGC	alt_6028_new	0	0	0	0	0	0	0	0	0	0
AGATCCCAGGGGTATA	alt_6028_new	67	62	71	46	55	47	64	66	60	67
TGCCGCACATTAAAGC	alt_6028_new	0	0	0	0	0	0	0	0	0	0
ACAAAACTTTACTTTG	alt_6028_new	34	59	62	49	48	45	47	59	44	35
GTAGGTTATTACAATG	alt_6028_new	48	45	42	34	34	37	31	34	37	28
GTGTTGCAGCTCCCCG	alt_6028_new	5	17	6	3	19	8	10	0	18	5
GTGTACTGCCTGGCAG	ref_6028_new	28	40	35	31	32	30	41	27	38	26
ATCACGGTTTTCCGTT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TCGCCGCGGACCCGCC	alt_6028_new	3	4	10	1	4	2	6	4	3	3
CTGAGAGGTATGGTTT	alt_6028_new	112	158	150	102	119	125	142	100	181	114
CACTCTGGTCATAAAG	alt_6028_new	43	67	56	55	54	40	52	37	47	49
GCGAAAGCCGTTGCCA	alt_6028_new	158	224	250	191	219	150	264	168	269	184
ATGTGTCTATCTGTCT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TGTTGGTTTAGTGTGT	alt_6028_new	0	0	0	2	0	0	0	0	0	0
GCAAGCCTAAGAGGGC	alt_6028_new	3	3	7	2	2	2	5	0	4	3
TTTGGTCTACGCTGGA	ref_6028_new	31	39	24	29	25	22	38	28	31	26
ATCGTTAAGTAGCTGA	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TGCTTCGCTACCATCT	alt_6028_new	7	5	11	10	6	8	6	6	6	4
GCCGGCTCTCATAGAC	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GCACACGCTCTCTTCG	alt_6028_new	20	28	24	19	25	15	25	14	22	18
GCCCCGGCGCTCTATT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
AGTATCACGTTTCCCT	alt_6028_new	9	8	13	3	16	7	15	12	6	16
CACCCGCCCGAGAAGT	alt_6028_new	116	115	139	129	107	120	113	107	102	92
CGTAATTAGCCATAGG	alt_6028_new	10	10	7	7	11	12	14	8	5	9
CTCCCTCTTGGCCTCA	alt_6028_new	4	24	14	8	32	5	40	4	24	8
TAATGCATCGGGGTGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
CACTCGCTGTTGCTGT	alt_6028_new	28	49	40	38	53	33	59	31	64	28
CTGGTCTGGATGGTCC	ref_6028_new	42	50	58	35	47	43	39	32	43	38
TTGAAGCGTAGGGCCG	alt_6028_new	11	11	18	27	18	15	14	13	32	19
TAAAATGTAGTTCCCC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
CCGGTTGGTGTTAGTG	ref_6028_new	23	38	13	20	46	19	32	16	36	19
AGGCTATTCGTGCACA	alt_6028_new	47	25	31	37	40	40	45	31	49	39
GCTCGTACGTTTGCGC	alt_6028_new	6	2	9	5	5	1	2	7	8	3
AAAATCCTGCTATTCA	alt_6028_new	0	0	0	0	0	0	0	0	0	0
AGGGCACGTATTTACG	ref_3390_missing	5	19	14	9	8	4	8	7	11	3
GCCAACCACCCTCCAG	alt_6028_new	7	28	9	6	29	5	15	6	16	6
TTGCGTCCGATATGCT	ref_6028_new	38	37	37	42	47	32	38	37	48	30
AATATTCTCAAGGATA	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TCACGCATTTGGATTG	alt_6028_new	34	41	38	37	33	29	24	23	38	24
TTATCAGCATAACGTT	alt_6028_new	20	29	23	29	22	16	22	18	38	20
CACAAATAATGATGAC	alt_6028_new	17	24	22	13	13	16	19	12	23	23
CCCCGCTGGTCACAAG	alt_6028_new	29	47	45	43	47	33	47	34	39	31
GGTTAAATATGGCTCG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TAGTTGCTTGATGCCT	alt_6028_new	10	22	15	11	8	14	12	8	16	5
ATAGAGCGGGTCCCGC	alt_6028_new	5	4	19	10	15	15	14	13	8	13
CTGTAGCGCGGTTTCC	alt_6028_new	16	16	16	19	12	17	23	17	17	19
GATATTATAGTTCAAG	alt_6028_new	9	8	6	13	12	8	6	8	5	6
AGACATAGCGCGCATC	alt_6028_new	10	12	9	9	8	7	7	9	14	2
AGGGACGTTCGTACGG	alt_6028_new	3	6	6	3	5	1	3	3	2	4
CTTTCGCCAGTATGGT	alt_6028_new	63	82	85	79	58	87	79	50	81	54
TGCCACTCACCGACAG	alt_6028_new	9	7	8	10	9	4	8	6	18	12
TCTGGCAAATGCGCAC	alt_6028_new	39	25	49	46	47	21	49	18	42	37
TTCTCGCATAATCGGT	ref_6028_new	200	264	288	265	282	204	255	191	266	241
ACCTCTTATGAGTTCG	alt_6028_new	44	54	57	63	55	38	62	40	73	45
CTCTTGGCACTGTAGC	alt_6028_new	40	34	31	29	42	32	35	31	41	30
TCAGTGTCCCCTGACT	alt_6028_new	28	30	40	30	38	45	47	25	37	27
TTCCTTATTTGTTCTA	ref_6028_new	17	7	14	15	8	14	7	10	16	9
CGGGATACGATTCTAG	ref_6028_new	21	18	21	23	26	13	17	26	33	23
GGCTCATACTTGCGGG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GACCCGGCGCTATATT	alt_6028_new	0	0	0	0	0	0	0	1	0	0
GTAAGAGATGGATACC	alt_6028_new	20	12	11	13	8	20	18	11	30	14
CAGAAGTTTCCTTCGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TTTAGCGGTCACCTTC	alt_6028_new	3	9	7	6	7	5	7	3	3	4
CTAAGTTGAACTATTC	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GCGGGAAGCCTTCCTT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GCTGACCGAGCCGCCT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TCTGGGTTAAAGGCTA	alt_6028_new	46	20	57	46	32	28	18	38	48	33
CCCACACGGACATGTG	alt_6028_new	17	18	29	13	14	14	16	17	25	11
GAAATGTCCCGGTTTG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GCTAGAACTTCTAGGG	ref_6028_new	26	25	24	24	32	25	18	26	45	30
ATCTCGCATAATCGGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GTTTGTCCTCCAGGCT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TTACCTTGCGTGTTTG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
CGTCGTCTAGAACAGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TCTCTGCACAGAGCCT	ref_6028_new	35	37	51	49	38	36	36	33	45	35
CACCCGCTGGACTGTT	alt_6028_new	2	3	3	0	3	1	5	3	6	1
TCTGTGTTCGGTCTGG	alt_6028_new	14	24	21	17	26	19	33	15	22	22
TCCCGATCTGTAGTGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
AATCACGAACTTTTAC	alt_6028_new	14	11	17	22	17	12	12	11	11	3
TCTTATTCGTTCGCAT	alt_6028_new	4	8	4	1	4	2	4	4	3	4
TCCCTGACCCGGAGGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTGTAGTTTTG	alt_6028_new	25	39	35	36	37	28	33	21	35	33
GCGTCTAATGTTTGTA	alt_6028_new	15	15	11	5	4	9	16	10	15	8
TTCAGCGTCTAACTTT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
ACTGTTAATTTCTTTG	alt_6028_new	12	12	17	13	22	14	17	12	14	12
TTGGATTCATGCAAGC	alt_6028_new	18	11	18	13	24	19	14	16	4	11
CGATACGGGCCAGCGT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
ATTGAGGCACTACGGC	alt_6028_new	58	67	76	62	57	68	69	59	56	33
AGGTTTTACGGTAGCT	alt_6028_new	12	14	23	28	24	13	16	23	12	13
CTTTTAGGATAGTATT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
CCACTCTGTCCTTCGG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
GATTGTTTGCCGGAAA	alt_6028_new	17	23	23	7	21	11	24	16	19	11
GATGTATTTGTTTAAA	alt_6028_new	39	36	42	27	25	31	37	33	30	35
CCTGTCGTGCGGGTTC	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TTCTTCCCCAGACGAG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TGACCATATCTCGATT	alt_6028_new	23	27	33	24	17	15	33	26	23	25
ATCATCCTTCTCCCTC	alt_6028_new	94	110	112	121	98	85	105	75	94	97
ATTTGCGCGATTGATG	alt_6028_new	15	20	37	27	22	20	15	29	27	9
CTCACATGTCGGTCTA	alt_6028_new	46	50	61	51	54	45	45	44	44	42
GTTCAGATGGGCATTG	alt_6028_new	0	0	0	0	0	0	0	0	0	0
ACCGCCCAGGTGCCAT	alt_6028_new	0	0	0	0	0	0	0	0	0	0
TAATCCTGATGGCAAA	alt_6028_new	0	0	0	0	0	0	0	0	0	0
AGCATTCTATTGCATT	ref_6028_new	147	166	158	119	181	119	192	128	169	112
ATCATGTTCTAAGTTA	alt_6028_new	22	41	37	26	34	25	30	18	43	35
AGGATGATGGTAGTTT	alt_6028_new	7	13	10	14	6	12	16	11	6	9
TACTGACCGCCCTTCA	alt_6028_new	31	27	29	37	36	20	26	31	36	27
TTAGTCCTTTTTGTGT	alt_6028_new	19	5	8	14	11	14	16	12	15	15
CAGAATTGCGCCTAAC	alt_6028_new	107	121	119	95	96	82	119	92	93	97
CGTACCCTTCGATTAT	alt_6028_new	7	17	20	9	16	11	16	5	18	7
GCCACTCCTCCCTCCC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
TTGCACCTCACGGGCG	alt_5019_RC	10	11	11	18	17	10	25	7	20	11
CCAAGGCATGCCTGTA	alt_5019_RC	24	35	22	15	22	21	28	30	23	17
TGTCGCGAGGCGTATA	alt_5019_RC	15	11	21	19	7	16	22	19	7	8
CTCTAAGTGGTCGACG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
GTTTTATCGCATTTTC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
AGCATCGGTACGCACG	alt_5019_RC	49	41	59	38	44	47	42	33	42	48
AGGGCATATCCAAAAT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CGCTGCCTGTTCTCGA	alt_5019_RC	49	66	73	75	70	48	86	44	95	43
TTGCATCCTCACGGAC	alt_5019_RC	13	12	13	9	9	4	14	10	9	7
TTACGCTGTCAATCGC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
ACATGAAATAAACCTT	alt_5019_RC	37	41	49	42	32	39	38	34	36	31
ATGCGGTGAACCGTGA	alt_5019_RC	13	3	12	17	6	10	6	9	15	8
GTAGTTTCGCTTTTAG	alt_5019_RC	29	27	47	48	24	37	28	32	28	35
CAAACATAGTTCTAGT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CTTCCTAAGCGCCCTC	alt_5019_RC	11	12	14	16	17	15	17	10	10	16
CTACAGACCTCAACTC	alt_5019_RC	0	2	4	3	2	2	5	2	2	3
TAAGTATCTTTGCGAC	alt_5019_RC	8	9	12	13	12	6	16	10	6	10
CACAAGGAAGGGGCGT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CTCATTTCGAGACATG	alt_5019_RC	47	45	68	47	42	43	41	57	34	55
AACTCCATTTTAGCGC	alt_5019_RC	18	22	32	21	30	19	24	17	10	18
AATTCGAGCGTTTTCG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CTAGTCCCAATTTTCC	ref_5019_RC	24	48	67	46	63	29	58	46	67	33
ATCATTCTTCTATTTA	alt_5019_RC	77	67	97	81	49	78	59	91	51	70
ACTTACCTTGTCATTA	alt_5019_RC	1	28	5	5	28	2	35	0	28	1
CGTCTTTTTGAGTGGC	alt_5019_RC	85	81	116	91	84	87	77	76	84	100
TTTCGATGGGCGAGTT	alt_5019_RC	2	6	5	9	12	5	10	4	5	1
TATCTTATGTAAGGAC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CGCCATCTATAACGCC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CATTGATGGCACTCTT	alt_5019_RC	5	2	14	7	9	3	13	12	12	6
CAATGCTAATCCGCAG	alt_5019_RC	54	67	84	70	48	69	67	40	44	54
AAAGAATAGGAAGTTT	alt_5019_RC	52	36	66	32	34	56	41	32	44	36
CGCGAGTGGATCTGGT	alt_5019_RC	30	37	47	50	36	48	45	36	40	30
TCCGCGTACTCCTGGG	alt_5019_RC	18	29	21	24	26	25	33	33	30	17
TTATATTCCGCAATCA	alt_5019_RC	37	39	36	45	32	39	29	30	39	45
CCGGAGAGAAGTGGGG	alt_5019_RC	6	7	9	8	4	14	6	10	7	11
GTGATCCACTTTGTAT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
GCCATTACATAGAAAA	alt_5019_RC	2	6	13	1	1	8	4	6	9	10
CTAACGGTCTGTTCCC	alt_5019_RC	14	28	24	13	32	22	30	16	22	9
CGGTTCGATTGCGGCA	alt_5019_RC	4	5	2	3	1	1	5	2	9	1
GGCCCTTGCCGGTTTT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
TCCCTTGAAACTGGCG	alt_5019_RC	26	18	17	21	17	13	21	18	13	16
TTTTCCTGATCGTTAG	alt_5019_RC	0	2	0	1	2	0	3	0	0	1
TACGAGTCTGACATTG	alt_5019_RC	1	2	1	2	4	6	9	1	7	2
ACTTACATCTTCTCAC	alt_5019_RC	23	25	32	32	22	28	28	30	36	33
CATTCCGACGATTTCA	alt_5019_RC	16	10	19	22	18	13	16	27	27	20
TCAATATTGGAATTTG	alt_5019_RC	22	22	25	39	11	31	28	21	18	32
TTATCATAGTGTCATT	alt_5019_RC	16	14	22	8	10	15	14	14	19	8
TTGTAAGCTGCGTAGT	alt_5019_RC	17	16	18	13	22	22	17	29	21	14
TGTCTTGCCGGGCATC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
GCCAATCCGCGCGCCC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
AAAGCTTGGGTAGCCA	alt_5019_RC	34	27	42	51	27	33	36	38	44	26
ATCCCCCGTCTAAACT	alt_5019_RC	2	6	2	0	1	0	2	1	2	1
CGGTCTCCATTGTTTG	alt_5019_RC	17	30	14	22	32	6	27	9	33	13
CGCGACAGAATGTTTT	alt_5019_RC	69	58	75	54	74	84	90	64	62	47
ATAGTGGACCGCCTTC	alt_5019_RC	18	20	29	28	18	28	16	18	33	30
TAGGATCGTCGGAGAT	alt_5019_RC	286	203	330	278	197	227	260	225	262	230
TTGGACAGAACCCTAT	ref_5019_RC	18	19	25	12	19	19	12	10	17	15
CGTCTTGTTTTCCTAA	ref_5019_RC	27	30	37	22	34	31	31	30	38	31
ACTGACGCCTTTGGGT	alt_5019_RC	3	3	5	2	5	2	0	1	2	6
TCTCCTCCGAGCTTCA	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CTTTACTTTCCTCTAA	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CCTGTGTCCTACGTCT	alt_5019_RC	16	16	25	9	11	13	15	11	23	9
GAATGGGCGCTGTCTT	alt_5019_RC	19	16	21	37	19	22	13	15	22	10
ACACCAAGTGTTGAAC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTGGTTTGCCAA	alt_5019_RC	25	28	22	28	27	22	27	25	23	25
CGAACTGCGGGTGATG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
AACAAGGTTTGAACAG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
TCTTAGCGTCACTCGG	alt_5019_RC	105	96	156	118	107	93	126	102	92	101
TATGGACCAAGGTGCG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
GTCATTCTAGCGTGGA	alt_5019_RC	30	23	31	38	40	20	40	32	32	25
ATGATTATAGTTCGCT	alt_5019_RC	1	0	4	2	3	3	3	0	2	0
AAGTACCACTTGAGCC	alt_5019_RC	10	9	18	17	11	17	6	14	12	12
AATTCCCAATATTTCG	alt_5019_RC	24	17	29	15	11	31	10	21	19	22
TCGGTCGTTTGTGTGT	alt_5019_RC	11	20	13	9	21	4	22	4	21	11
CTGTGTTAAATTTCTC	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CGCCTCTTTTTATGTG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
ATGTACTTTGTAAAAA	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
GGATTCATACAGTTGT	alt_5019_RC	72	72	108	84	54	82	82	58	87	80
TCTTCTAAAACTGGCG	alt_5019_RC	15	20	24	18	24	15	19	21	31	12
TTACGCCTTATAGATA	alt_5019_RC	100	106	154	111	135	111	128	121	113	78
CTAGGTTGTCGTAGTA	alt_5019_RC	5	6	4	9	5	5	6	2	3	3
CCCCATAAAATTCCGA	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
TACAGCATAGGTAACC	alt_5019_RC	53	66	81	98	75	65	54	64	72	68
TACTCATTCCCGTACT	alt_5019_RC	60	48	67	70	56	42	60	50	54	58
GGTATATCAGTATTGT	alt_5019_RC	109	135	162	137	153	129	147	161	146	106
GTGGGCTGCAATATGA	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
AATGAATTGTGAATAT	alt_5019_RC	21	22	38	28	20	21	46	30	34	22
TGACATTCCTCAACGA	alt_5019_RC	41	28	51	56	35	36	36	29	37	45
GGCATAGTTCAGATAT	alt_5019_RC	27	20	33	15	19	24	16	19	28	20
TTCTTGGTGGTAGTAT	alt_5019_RC	41	42	48	52	39	37	59	46	47	44
CATCTTAAATTACCGT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
ATGCACTCATTGATTT	alt_5019_RC	41	40	53	45	51	39	74	57	50	51
TAAGGGGTATTGGGGG	alt_5019_RC	18	17	31	21	24	28	19	20	21	20
CATGGCTTTCTAGTCG	alt_5019_RC	23	19	27	31	20	34	23	32	26	25
GAACTCAGAGTTATAT	alt_5019_RC	2	4	0	0	1	0	2	1	1	3
GATTCGATCTACCTTA	alt_5019_RC	53	57	86	74	70	50	80	72	64	49
CTCTGGCAATTAAATT	alt_5019_RC	24	18	21	19	23	16	28	21	9	12
CTGCTGCGGGTCTTGG	alt_5019_RC	17	12	17	9	16	18	25	24	18	18
TTCCCCGGCCTGTCTA	alt_5019_RC	124	160	191	139	175	151	169	142	158	103
GTGGCCCAACAACTAA	alt_5019_RC	104	77	79	84	59	61	79	65	61	79
ATCTAGTGTTATTATT	alt_5019_RC	52	67	58	55	49	46	60	53	74	31
ACTAATCTCCCAAATT	alt_5019_RC	70	60	81	60	67	67	61	58	73	65
ATGGTCCGGGCATAAC	ref_5019_RC	50	61	80	66	77	52	86	57	77	59
TGCTAAGGTGCCAATG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
TCATCCCCTCTCCCAG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
GTGATACAGGCATAAT	alt_5019_RC	46	38	36	34	41	30	41	33	34	37
GTCGCATAGTGAATCG	alt_5019_RC	11	9	12	4	8	11	8	5	6	3
ACCTGCATCACATTAT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
ATTCACTCGGGTAAAC	alt_5019_RC	29	23	27	24	22	21	33	20	23	21
TGTTACCCTCTGTGGG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CAGATCCCTCACGGCT	alt_5019_RC	98	99	147	140	92	112	90	108	91	97
CGAAAGTTTCCCTCAC	alt_5019_RC	20	22	16	27	20	13	11	12	19	23
TAGGGTACTACGATGG	ref_5019_RC	49	49	67	52	33	56	47	57	43	55
TAAAAGTTGCCCGTCA	alt_5019_RC	90	105	156	110	118	107	119	117	110	96
CCGCCATACGTTTGCT	alt_5019_RC	9	45	10	14	32	13	34	9	31	5
TTGGTCTTGCTTTATG	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CGGAGTCTTCGTACCT	alt_5019_RC	54	41	77	46	46	51	58	41	54	38
TTATGTACTTTTTGTT	alt_5019_RC	51	32	55	38	50	44	38	45	53	48
AGTGACGACTTCAATG	alt_5019_RC	26	36	29	26	37	27	32	40	27	23
ATGATGCGTGTGTTAT	alt_5019_RC	50	19	64	43	27	54	23	50	27	36
GAATGTAGTAACTGTT	alt_5019_RC	9	16	4	3	17	5	14	6	12	7
TGATGTCTTCCGTGAT	alt_5019_RC	43	15	46	58	31	36	34	40	35	40
CCTATGGCGGAATCAA	alt_5019_RC	86	71	103	95	84	72	78	79	58	74
TTCTGCGCACATTGGA	ref_5019_RC	131	134	170	163	129	134	148	151	128	140
ATACAGTTGCGTAGGC	alt_5019_RC	39	27	35	17	18	19	38	29	34	21
TGTCAGGATTCAACTG	alt_5019_RC	95	66	85	94	84	77	90	93	61	76
CCTATTATACATACAT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
CATCTTCTCCGGAGCC	alt_5019_RC	189	129	199	154	146	152	173	147	160	137
ACACGGTCATCGACAC	alt_5019_RC	29	142	33	43	139	22	137	20	143	33
GGCTACTCCCATATGC	alt_5019_RC	1	13	2	5	9	2	17	4	9	6
CTGCTGTCCATGCTCC	alt_5019_RC	47	73	96	53	77	56	65	43	54	44
CGTTTTTATCTGTCTT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
GGGTATGATTTCGCAT	alt_5019_RC	11	2	8	1	4	5	3	5	6	5
AGCTCCGGATTAGTAT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TCCCGTTCAGTCTGCT	alt_5019_RC	75	72	93	93	88	82	75	57	119	52
AGCATCACAACTCTTT	alt_5019_RC	82	78	86	71	94	66	85	61	67	53
TTGTACAGCTCGAGTC	alt_5019_RC	25	23	26	21	29	25	13	23	13	18
AGAAGGAGTTGCCTCC	alt_5019_RC	106	93	122	101	116	70	99	113	97	94
ATTTCACCGCTTGTAA	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
AGACGCTTAGGTCATA	alt_5019_RC	16	16	28	13	13	14	25	20	18	20
TTGGGTCTTTTTTTTC	alt_5019_RC	16	38	17	8	32	18	25	11	20	7
TGGCCTATAATATTTT	alt_5019_RC	27	27	30	25	40	16	25	27	24	24
TCGTTGCATAATGCTA	alt_5019_RC	41	28	48	31	21	20	30	24	33	31
AAAGGCAGGTTGGGAA	alt_5019_RC	51	57	65	56	55	49	47	49	59	49
AACTGCCATTTAAATT	alt_5019_RC	1	4	5	14	5	5	4	4	1	3
TTACTTTTACCGTATT	alt_5019_RC	0	0	0	0	0	0	0	0	0	0
AACCCTGCTTCTACAG	alt_5019_RC	9	7	4	6	2	4	7	2	1	2
GAGAATAATTTGTTAC	ref_5019_RC	185	135	198	185	172	172	134	155	171	129
GCCACTAACGGATCTC	alt_5019_RC	7	10	16	12	10	11	12	5	13	11
TCATGGAAGGCTCCGT	alt_5019_RC	77	54	83	90	62	53	60	76	71	75
TCCAAGGGGCTCACGT	alt_1117_fdr	28	39	39	33	42	30	53	27	44	32
GGTTTTGACGGGTATG	alt_1117_fdr	15	21	13	11	12	17	13	15	16	17
TAATTTGTAGGATGCG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GAATCTTCTTTCTTCG	alt_1117_fdr	177	137	242	198	140	163	147	184	140	164
GCCTCTCCCTGACCTG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTCAACACCGTTCAAG	alt_1117_fdr	24	41	34	31	33	25	38	30	51	25
AGTCCTTCAGTTCGAT	alt_1117_fdr	39	39	40	28	32	22	43	25	32	35
CCTGCCCGCGTAAATG	alt_1117_fdr	15	11	24	13	16	16	15	13	17	15
TCCGTTGCGCTTCATG	alt_1117_fdr	140	175	194	154	190	160	190	137	210	144
GCCTCTCTCGTCTGTC	alt_1117_fdr	6	6	5	5	2	3	6	9	8	1
CTATAGTTTGCCAGTA	alt_1117_fdr	1	8	5	4	3	4	10	3	4	1
TCGCGGGGGGAGCCAA	alt_1117_fdr	40	48	45	49	38	55	43	41	44	44
CCTGGCTATGTCTGAT	alt_1117_fdr	12	15	10	10	10	8	15	3	7	12
TGATTACCCCTTACTC	alt_1117_fdr	11	8	9	15	11	9	22	14	8	9
TTGGCCACCGCACCAC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTACGTCGTCTAGAAC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTTCGTACTAGCG	ref_1117_fdr	33	42	35	24	50	33	35	35	28	31
ACACCCTCTAAGTCTT	alt_1117_fdr	13	61	25	15	62	7	69	12	73	12
ATTAAACTGGCTGCCT	alt_1117_fdr	5	16	3	5	6	4	9	6	11	6
ATGATCACGTGCATCA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTCACTGGCTTGC	alt_1117_fdr	45	44	42	48	46	39	48	42	41	30
GGTCCATTCCTCACGT	alt_1117_fdr	20	23	26	23	28	28	16	10	34	26
AACCCGTCTTCGAGGC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTTTCGTCAAACA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
ATACTGTTGGTAAGTA	alt_1117_fdr	0	3	2	0	0	0	2	4	2	1
CTTTACTCGGGAAGAA	alt_1117_fdr	9	8	13	4	11	10	4	5	6	5
GTCTACTTTGGGTATA	alt_1117_fdr	169	166	202	149	182	183	170	122	181	134
AACAGGATCCTGTCCT	alt_1117_fdr	22	24	21	24	21	25	32	32	25	11
TACCATATATCTCTGC	alt_1117_fdr	3	3	2	1	0	2	4	3	6	2
GTTATCATTACTATCT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CAGCAGTCTTCGTCCA	alt_1117_fdr	6	12	7	12	17	10	20	11	16	7
TTGCAAATGTATCAAA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TACGCACCTATGAAGC	alt_1117_fdr	83	83	112	72	84	72	93	62	88	79
AGCAGTATGGTCTTTA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGCTACTTCGGTT	ref_1117_fdr	63	61	122	97	78	82	68	89	70	68
CCCTAGGCATGTGAAG	alt_1117_fdr	8	7	8	6	7	3	11	1	11	4
ATTTTGCGTCGAGTGG	alt_1117_fdr	35	45	38	16	39	39	44	35	43	39
GGCCGTGCAATACCCC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GAATACTAAATTTTTC	alt_1117_fdr	13	21	27	25	31	26	19	24	30	28
ATCCTTTGCAATAGCT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGGGTATGAATCT	alt_1117_fdr	12	22	28	12	11	14	15	16	18	14
CCAGACTAATCTGCGT	alt_1117_fdr	9	10	2	5	6	2	12	8	17	2
ATGAGTGGTCCCGCCT	alt_1117_fdr	19	39	23	24	36	31	41	27	40	30
CTGATGGTATGAAAGT	alt_1117_fdr	72	85	75	79	77	63	81	81	64	60
TGAATTTTATACCAAG	alt_1117_fdr	19	23	23	33	22	24	28	17	22	17
CAAGCCTTCTGAGAGG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGGCGAGCACATG	ref_1117_fdr	85	65	120	74	69	71	62	79	44	77
TGGGTCCCTCGACCCG	alt_1117_fdr	81	86	96	90	89	71	86	77	107	59
CAAGTGCCAGTGTATA	alt_1117_fdr	8	7	7	7	10	6	6	4	7	4
AGCCATGTATCCTGTT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CATTAGTACGCTCCTC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGAGGAATTTTGT	alt_1117_fdr	12	19	24	11	22	25	23	13	21	23
AGCCTGTTGATATTTA	alt_1117_fdr	28	43	25	32	34	24	33	28	34	25
CCTATTAAATATTTTT	alt_1117_fdr	84	72	79	78	77	56	89	76	73	66
AGTAAACTAACCGTAC	alt_1117_fdr	5	11	3	9	25	11	20	8	21	8
ACTCGTACGTAATGGA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGGGATCACGCTT	alt_1117_fdr	54	39	59	42	43	47	47	53	52	41
AATGAACGACCTTGAT	alt_1117_fdr	2	0	1	0	1	0	0	0	1	2
TCGTAGGACCGAGCAC	alt_1117_fdr	42	44	59	46	45	37	37	45	29	36
GGACAGCAGCCAATTC	ref_1117_fdr	28	44	42	37	41	34	49	38	33	37
TGGGTCCCTCGCCCCG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GACCATACCCCGGGCC	alt_1117_fdr	4	0	1	3	6	1	5	1	8	3
TCTGAGAGTTATTGTA	alt_1117_fdr	35	31	45	31	23	36	37	25	42	31
TTGCAGATTATAACTC	alt_1117_fdr	31	42	42	32	37	30	33	26	41	29
TTGCATAGCTCCTGGA	alt_1117_fdr	119	124	153	149	138	108	146	116	140	125
CCCGTACCTCTACCAG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGCACTGTTGGGT	alt_1117_fdr	82	87	78	67	83	67	91	64	70	62
GAGGCCTCCGATAATG	alt_1117_fdr	126	119	176	152	157	134	152	126	148	106
AACGATACGGCCTACT	alt_1117_fdr	34	48	42	41	33	30	67	33	33	41
TGAGCCAGTTAACTCT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGCCGATAGAGGG	alt_1117_fdr	0	5	3	1	13	4	8	1	11	1
CACCTCGAAATCATTA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCCCATTTTTTGGTGC	alt_1117_fdr	25	12	10	24	22	18	16	11	39	9
TCTCTCGTCACCTCTC	alt_1117_fdr	1	0	0	2	1	0	1	4	3	1
GGTTCAATGTATCATT	alt_1117_fdr	30	34	45	25	31	33	43	26	36	34
CTACTCGTCGTTTCTG	alt_1117_fdr	10	11	5	6	5	7	11	8	7	9
AGTCACCCTAATGTGG	alt_1117_fdr	9	7	5	4	14	7	14	6	19	4
CAGCGTGTCGCTAATC	alt_1117_fdr	2	8	5	3	6	7	10	1	1	4
TAGTCAGTCACACGGG	ref_1117_fdr	53	44	88	72	46	51	51	60	38	51
TCCCTGATTAACTAAT	ref_1117_fdr	629	452	764	622	437	592	502	608	509	546
CGCGGGGACGTCCAGT	alt_1117_fdr	9	12	14	7	11	11	15	9	14	8
CTGTTATTGACTCATT	alt_1117_fdr	22	23	23	23	31	24	26	23	33	18
TCAGGTGTGCATCTTT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGGATAGAAAGGTTAG	alt_1117_fdr	44	51	48	43	36	48	50	40	47	41
GCCGGGCCCATACCAC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCAACACATAATG	alt_1117_fdr	47	48	53	42	47	36	48	35	47	37
GTTCGTGAACGTTCCC	alt_1117_fdr	31	35	36	27	29	27	29	17	39	25
CGTCTGATCCCCATGC	alt_1117_fdr	4	12	8	4	13	4	10	7	16	7
GTGATATCGTTCAGTT	alt_1117_fdr	20	21	17	13	23	19	30	18	25	15
CTTGGTACGGGCCCAC	alt_1117_fdr	28	32	38	26	24	21	27	21	32	25
CACTACTGTTCCAAGA	alt_1117_fdr	43	65	71	65	70	44	79	56	71	44
CTAGTCTTGAAAGTCA	alt_1117_fdr	39	42	48	45	52	44	48	22	63	28
CTTCGAGTCCTGGACC	alt_1117_fdr	30	22	28	23	21	16	34	22	17	19
GTTGGTGCGCATCCGG	alt_1117_fdr	23	29	23	25	20	15	30	10	25	21
GTGAGGTAGTAGTCTC	alt_1117_fdr	28	37	34	36	57	52	43	35	49	41
CTCTCGGAGATATATC	alt_1117_fdr	4	3	3	6	5	7	7	5	5	1
CGCAGAACTCAATTAG	alt_1117_fdr	30	52	43	29	39	31	36	27	44	24
ATACCTCATGTGTGCC	alt_1117_fdr	8	10	5	3	5	6	7	8	10	3
CTTTTTACGTTCTAGA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CGCATGTCACACACTT	alt_1117_fdr	29	30	34	34	41	26	37	40	26	28
GTACACTCGAACGCTC	alt_1117_fdr	14	25	11	5	31	8	51	6	28	18
AATACAGTAGCTTATC	alt_1117_fdr	35	43	43	45	42	49	34	35	36	41
ACAGATGCCGGTGTGT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGGGCAATTTTTACAT	alt_1117_fdr	7	9	10	7	10	5	9	10	11	5
TGTAACTTGGAGGCAT	alt_1117_fdr	71	64	60	62	51	41	57	52	70	54
CGCTCTTTACTCCTGA	alt_1117_fdr	1	8	4	1	1	4	4	5	3	7
TGTTAGGGCGATTATT	ref_1117_fdr	12	11	6	17	7	8	14	13	10	14
AGAGTTCGGGCCTGAA	alt_1117_fdr	49	44	57	40	46	50	63	39	40	46
TTAGCGATTAGGACCA	alt_1117_fdr	19	28	32	21	22	21	17	25	25	16
TCACATGGCTAAATAC	alt_1117_fdr	43	39	52	46	40	33	42	36	35	38
CGTGTGTGTTCCCTCC	alt_1117_fdr	6	8	12	7	14	5	4	7	4	5
ACGGAGTACTGGGGAA	alt_1117_fdr	13	4	12	14	12	10	15	15	19	8
CTGGGTCGGATCTTCA	alt_1117_fdr	21	32	31	26	23	26	36	23	22	19
CACTACTCTCCAACCT	alt_1117_fdr	26	49	47	38	76	29	68	31	64	43
GCGCTATGACTGGGAA	alt_1117_fdr	22	24	28	22	19	18	23	16	23	14
TCTTCTCTTGGTGAAC	ref_1117_fdr	42	34	45	47	29	40	39	40	52	30
TCGCGTTTCTAGCCTC	alt_1117_fdr	2	0	2	0	1	0	3	2	1	3
ACCGATTCAGTGGGAT	alt_1117_fdr	38	42	38	44	42	46	66	41	50	39
GCCCGTGATAGGGACG	alt_1117_fdr	110	104	101	73	107	97	98	101	109	106
GGCAACGGCACTTCGA	alt_1117_fdr	12	10	10	17	12	10	6	10	10	7
CCATACCTCATGACAC	alt_1117_fdr	90	97	101	86	89	87	116	80	80	78
CGTTTCTTGAGGGGCT	alt_1117_fdr	26	26	47	29	29	34	39	28	38	29
ATGGACTATGGCCCGG	alt_1117_fdr	41	27	38	23	51	30	34	32	33	25
TTCGAGGTCGCACAGG	alt_1117_fdr	4	9	17	12	5	9	21	11	12	11
TATTATGCGCGCGTCC	ref_1117_fdr	15	22	33	28	17	18	27	16	17	15
GATTGCACCTGTTATC	alt_1117_fdr	8	9	8	6	5	6	5	3	10	10
TCCCCGGTTACCCTAT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTTCATCGAGGACTTC	alt_1117_fdr	36	50	51	30	40	34	40	34	48	30
TGTCAACAAGGCCCTA	alt_1117_fdr	117	117	125	109	134	118	119	102	128	140
GTTGTTCTTGACAGGT	alt_1117_fdr	4	0	2	3	9	5	1	2	4	1
CCAAATGTTATCGAGC	alt_1117_fdr	44	74	51	66	63	41	67	46	77	46
TCTTTTAAAATCTTAC	alt_1117_fdr	30	29	40	33	32	28	39	21	29	31
GCATGCGTGTTAGGTT	alt_1117_fdr	341	347	388	330	302	322	355	268	406	274
GTCGTCATCTCTTCCT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAATTCGGGCACA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGCCGAGTTAGGC	alt_1117_fdr	65	72	69	85	68	71	68	65	67	54
TAGTCTCAGACCTCTC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GTCAATCAGGTAGGCA	alt_1117_fdr	28	66	19	31	74	17	64	17	81	14
GTCTTCTTCTAGCGTT	alt_1117_fdr	37	34	39	31	41	26	60	33	50	34
CGGTCTTTTTCGCCCT	alt_1117_fdr	1	1	2	3	0	4	1	4	4	5
TTCGAAGTTAAATTGA	alt_1117_fdr	33	52	34	37	42	36	40	31	40	37
AGCTATCGTCGCATTT	alt_1117_fdr	30	24	32	34	35	38	39	27	18	31
GTAGAAGGCGCCGAGC	alt_1117_fdr	77	55	99	84	98	61	82	71	95	58
CAACCTTTCACGTAGT	alt_1117_fdr	3	25	13	7	28	7	26	7	43	4
TCCTATCCCCCTTCCT	alt_1117_fdr	108	112	142	103	114	94	146	104	143	99
GTATATCTCTCATTTT	alt_1117_fdr	44	46	45	35	38	35	43	53	37	47
CAATTAATGCCAACTT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GACCCAGGTTGGGTCA	alt_1117_fdr	20	31	51	36	38	32	35	23	27	20
TTTCCTGGGCATCTAT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTCGTTGTACTCG	alt_1117_fdr	21	24	22	19	35	31	21	14	23	19
TGCTGTCTAACTGTTG	alt_1117_fdr	9	25	17	11	15	18	17	15	24	6
AACGCCCTACACTCGC	alt_1117_fdr	19	41	45	29	44	41	30	47	59	31
CGTGCACCAACCCTGG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTGTATGCAAGGC	alt_1117_fdr	13	15	20	11	14	11	21	11	15	14
TGAGTGTGCATAAGTT	alt_1117_fdr	3	6	12	2	6	12	7	7	5	2
CATGCTTTGTCGCTCT	alt_1117_fdr	79	61	96	67	72	77	87	68	80	62
GGGTCTCCCCCCTTTT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CATATCGCTCGATATC	alt_1117_fdr	22	24	26	30	31	17	38	17	32	38
GTACTGCAGTTCCACC	alt_1117_fdr	75	82	84	76	103	70	81	57	78	64
TGCTCCTCAACGATGT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTTTAAGTGTGAG	alt_1117_fdr	5	15	10	4	18	12	19	7	17	7
CTCAAGCGCTGCATTG	alt_1117_fdr	5	6	5	3	1	4	3	2	6	2
GATGTTAGCTTTTCAC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCAGACTCAGGC	alt_1117_fdr	3	3	7	11	2	4	8	8	11	5
TCAACACGTACGTCCA	alt_1117_fdr	17	20	15	14	34	16	22	13	26	14
AGAGGCTCGGACTTTG	alt_1117_fdr	86	87	101	81	89	101	97	92	108	95
GTTAATATGTGAATTC	alt_1117_fdr	52	66	81	44	75	65	93	59	82	46
TACACGCTGAGTTTTG	alt_1117_fdr	18	18	21	19	28	33	24	19	18	25
CCAGCATCCTCAGCTA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGGCGCCGTTTCA	alt_1117_fdr	19	23	13	21	22	17	21	16	15	19
TTACCCACTGTGCTCG	alt_1117_fdr	19	23	26	17	24	33	27	21	22	29
ACAGGACCCAGCAATT	alt_1117_fdr	27	16	27	14	20	26	26	23	28	22
TGGGAGACCTATGTAC	alt_1117_fdr	35	51	41	45	51	44	67	45	56	39
ATTAACCGTCATTCAG	alt_1117_fdr	128	109	138	124	115	107	152	123	130	138
CGTATCTGCTGTCGAA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGGTTAATGACAT	alt_1117_fdr	21	13	32	9	29	21	19	22	24	23
CGCAGGACACTGGGTC	alt_1117_fdr	9	13	13	6	21	4	20	5	14	7
TTTTGACATCAGTATC	alt_1117_fdr	9	6	8	5	7	7	13	8	17	10
TTGTACAGGTTACCGT	alt_1117_fdr	18	20	17	17	27	30	21	18	19	20
TTCTAGTGGAAGTGGG	alt_1117_fdr	29	30	38	31	30	25	37	32	35	32
AAGTACAGACATTCTG	alt_1117_fdr	118	139	158	115	144	116	131	103	149	90
AATCTCGTCTTTAGTC	alt_1117_fdr	77	98	86	56	82	59	73	75	85	58
TCATAACAGGAGGCCT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GATGGCGTTACGTAAT	alt_1117_fdr	12	8	18	8	5	8	7	8	10	3
TATGTGTACCTCTTCA	ref_1117_fdr	130	145	162	147	145	124	132	134	151	130
GCGGTAAGAGAATTAA	alt_1117_fdr	30	26	25	39	27	28	28	27	31	21
TAGGTCGTATGCTGGA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTTCTGGGTTGA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TATATGCGTCCCTTTG	alt_1117_fdr	80	104	106	100	97	89	129	72	104	75
ATCGCGTGATTGTGCG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGCACGTCAGCTT	alt_1117_fdr	36	50	36	28	46	32	64	31	48	23
TTCTGCTAGGGAGAGA	alt_1117_fdr	0	0	2	3	0	0	0	0	2	0
TACGTTTGATGTGAGA	alt_1117_fdr	10	14	15	18	8	3	17	11	14	14
AGGTTTACCCGGATCA	alt_1117_fdr	69	52	70	69	58	52	79	74	58	75
TATCGTCCAAAATGCG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
ACCAAGCCAACTGATA	alt_1117_fdr	5	35	5	4	31	5	29	2	24	1
ACCGAGCTTTTCCTAC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGATTTAACGTAT	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTGTTCGTTTTG	alt_1117_fdr	5	10	18	5	11	15	15	11	19	15
ACATACAACCGTGTAG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTGCAAGGAATCACAC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
ACAATTTTCAGTCATT	ref_1117_fdr	201	193	237	212	191	192	208	179	192	181
GTTTTCCGTATCGGGA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
ACACCGCGTACAGTTC	alt_1117_fdr	73	78	100	55	90	50	72	74	84	66
ACCTCTTCTGGGAGCT	alt_1117_fdr	15	20	16	31	23	15	26	30	24	22
AAAACGTGTCATCAAA	alt_1117_fdr	5	8	6	3	7	9	8	5	9	1
GTTTTGGAACGATATG	alt_1117_fdr	69	64	84	63	74	64	66	53	78	55
AAGGTATTTTCCCTGG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTTTCCCGAGTCA	alt_1117_fdr	18	32	22	21	27	18	35	23	31	17
TTTGGATCGTGCATGG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGCGCGCCTTTAC	alt_1117_fdr	22	28	35	32	40	23	33	19	49	31
TCCAGGTCGTGTCAGA	alt_1117_fdr	228	332	259	221	346	239	308	211	372	190
TGCTGTACTTTGGTTT	alt_1117_fdr	6	15	7	7	5	8	4	10	8	2
TATATATTGTGAAGAT	alt_1117_fdr	12	17	21	15	22	9	17	13	17	12
CATCAGAAGTTACATG	alt_1117_fdr	3	8	8	4	6	9	7	6	10	9
TAAATCTGTCCTACTG	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCCATTAAAACTA	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGCTGCAGTCGTA	alt_1117_fdr	39	38	41	34	30	24	26	36	39	24
TCGTAGGCGGATTTGC	alt_1117_fdr	37	60	44	36	40	37	50	37	54	30
GCAATTTTTGTAGAAA	alt_1117_fdr	55	44	63	68	53	49	71	53	62	75
TTGATCGTTCGCTCCG	alt_1117_fdr	53	33	42	41	38	37	60	49	44	40
GGGGGTATGGTCGTTG	alt_1117_fdr	12	11	20	11	18	14	8	17	17	9
GAGTGTGGAAAATGGT	alt_1117_fdr	21	19	36	18	18	22	18	19	25	16
TTATAAATTAGTACCA	alt_1117_fdr	117	147	149	131	148	137	156	131	173	119
AAATGGTACTGATATC	alt_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTTATAGCCCTGGTCT	ref_222_RC	6	5	13	2	6	5	8	4	4	6
TGGTTTTTTATACAAT	ref_222_RC	38	32	30	19	33	18	20	14	32	11
TTCCTTAACTCGCCAT	ref_222_RC	8	28	25	6	24	12	19	13	25	18
ATTTTATGTGCATACC	ref_222_RC	48	58	48	45	71	43	62	62	68	45
GATTCCCTATTTACTT	ref_222_RC	29	48	48	36	43	34	42	22	36	32
TCGATCCATGTGCAAA	ref_222_RC	4	15	7	4	19	11	21	3	14	15
CTAGTTCGGATACATC	ref_222_RC	12	22	22	12	26	14	13	11	20	16
CGTTCAGCACTGTTCC	ref_222_RC	6	5	5	6	4	2	11	6	8	2
CAGCAGGTTTCAAAAG	ref_222_RC	18	31	21	23	28	22	43	22	29	22
CTTGGTACACTCGTAG	ref_222_RC	0	0	2	2	8	1	4	4	3	2
ATGCAACGACGATTCC	ref_222_RC	28	18	32	25	39	9	26	34	20	15
ATTTGCCTCATGCACT	ref_222_RC	82	108	89	85	95	79	116	62	120	69
AGTTTCATCCTTTGCC	ref_222_RC	5	8	5	8	9	11	4	4	11	2
TTGTCGATTCAGCCAT	ref_222_RC	180	232	201	214	202	159	230	172	202	151
TGGACGTAGCTCATAG	ref_222_RC	23	33	7	18	25	20	21	15	28	23
TGAAGCTTTCCACAAG	ref_222_RC	12	40	19	15	31	10	23	14	32	16
CCAGCCAGCCATGTTA	ref_222_RC	12	35	9	13	35	8	53	11	44	6
CTTGTTCTCCGGCCCT	ref_222_RC	0	0	0	0	0	0	0	0	0	0
ACTTCGCACATGCCCA	ref_222_RC	0	0	0	0	0	0	0	0	0	0
GGCCATGCTACGGTCT	ref_222_RC	44	73	42	36	55	34	57	44	62	40
ATTACCAGGCATGGCG	ref_222_RC	45	47	56	44	43	36	33	34	40	31
AGGGAGTCATGCATAT	ref_222_RC	7	5	17	9	18	15	14	12	2	9
GCTCTCTCGTCTTGAA	ref_222_RC	0	0	0	0	0	0	0	0	0	0
TCGTAAGGGGTGTACT	ref_222_RC	10	27	25	16	13	20	26	20	26	16
TTGCATATAGACAGCG	ref_222_RC	0	0	0	0	0	0	0	0	0	0
AACGCTTCGGCGTTTG	ref_222_RC	27	28	26	23	15	22	38	21	29	7
CCGTTCTAAGCGATCT	ref_222_RC	0	0	0	0	0	0	0	0	0	0
ATGGTCGAGCTTCCTG	ref_222_RC	201	239	256	177	233	187	202	157	244	166
CCTCTAAGAAAATAGT	ref_222_RC	39	46	30	34	47	35	44	26	45	23
GTCTTCCCTGGAAGGG	ref_222_RC	0	0	0	0	0	0	0	0	0	0
GCCTCTAATGTTAAGT	ref_222_RC	42	60	57	54	66	51	74	46	84	37
TACTGTTTCATTGCCC	ref_222_RC	29	34	34	18	36	18	34	19	30	32
ATTGGATATGTGTAGA	ref_222_RC	0	0	0	0	0	0	0	0	0	0
GCTTCAGAGCACCGGG	ref_222_RC	26	43	42	35	36	36	43	25	51	29
TGGTAAGGGTGCAAGA	ref_222_RC	0	0	0	0	0	0	0	0	0	0
AGCTATGGCCTTCGTG	ref_222_RC	140	141	160	141	156	134	144	99	166	102
GCGGTCTAAGTATTAG	ref_222_RC	14	16	14	15	18	11	22	11	15	8
TAGGTATCTGTCTCAT	ref_222_RC	9	8	8	5	13	5	13	6	13	4
CCTTTCACGAGCCGGG	ref_222_RC	20	52	40	31	54	28	51	29	45	25
GCAACCACCCCGTCCC	ref_222_RC	0	0	0	0	0	0	0	0	0	0
AACATAGGTGGTTGAG	ref_222_RC	22	12	19	15	19	19	15	20	20	18
GGCTCAAGCGGAGCTG	ref_222_RC	0	0	0	0	0	0	0	0	0	0
CCCGGGATATAGCGAG	ref_222_RC	45	44	38	38	53	31	39	23	47	29
ATGCTTATTATTTCCG	ref_222_RC	110	163	178	149	148	137	177	85	178	120
GGGTCAGAGCAGACGA	ref_222_RC	0	0	0	0	0	0	0	0	0	0
AACCGTAGGATCGGGT	ref_222_RC	18	23	19	28	15	11	16	21	26	12
TCCCTTCGATTTAAAA	ref_222_RC	7	29	24	11	17	12	20	10	24	15
CTTCTAGAGAAGGATC	ref_222_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTCACTTGACCC	ref_222_RC	28	40	41	34	50	43	50	29	61	37
AGCGGCTAAATTTTGC	ref_222_RC	18	24	20	16	24	16	33	17	19	14
CTCTGAATCATTCGGC	ref_222_RC	42	50	49	37	61	32	48	37	51	31
ACCGCGCTTCACCTCG	ref_222_RC	61	57	52	45	64	34	50	52	65	40
GTGCTACGGACATTGA	ref_222_RC	0	0	0	0	0	0	0	0	0	0
TACCAGAGCGCGTGCG	ref_222_RC	0	1	6	4	10	6	10	5	7	5
ATACTGCTTGCCACCC	ref_222_RC	0	0	0	0	0	0	0	0	0	0
TATCCGCGCCATACTT	ref_222_RC	10	13	9	6	10	6	5	3	8	4
AACCGGATTCTGTAAT	ref_222_RC	11	11	14	13	29	11	19	12	36	12
GTGCAGAAGCTGTGCT	ref_222_RC	0	0	0	0	0	0	0	0	0	0
GTCGAATTTCCTTCGT	ref_222_RC	82	110	112	105	89	94	108	81	130	80
TTCTCAAGATGAAGTC	ref_222_RC	0	0	0	0	0	0	0	0	0	0
TCAGCCCGTGTCCAAT	ref_222_RC	30	65	37	35	71	34	62	26	70	16
GGTTGCGGTAGTGGCT	ref_222_RC	81	94	111	95	103	64	90	71	123	70
AATTTCGGCCCCTTGA	ref_222_RC	6	3	8	7	9	5	9	7	6	4
TTGGTGCGCCTTTCTT	ref_222_RC	9	16	16	20	13	9	18	5	11	20
GTGCAGGCATGTAAAA	ref_5822_new	22	51	30	20	38	18	38	25	43	22
CAGTCTGTGAGCGTCG	ref_5822_new	8	14	0	11	9	4	11	4	19	7
CAACGCCGCTGGACCG	ref_5822_new	1	6	2	2	2	0	3	0	7	3
TTTGATGAACAGTTTT	ref_5822_new	29	75	40	34	51	34	66	29	46	26
TCATCCGGCACCCTCA	ref_5822_new	6	14	9	9	17	3	18	6	12	8
AAGATTTTTGGTTAAT	ref_5822_new	22	35	29	16	38	21	23	13	29	15
TGGAGGTTATGCGGCT	ref_5822_new	0	0	0	0	0	0	0	0	0	0
CTGAGGGGCAACGTTG	ref_5822_new	4	6	5	4	3	5	5	1	7	4
GCGGCGTGTGACGGCC	ref_5822_new	2	9	5	4	8	4	19	2	5	1
CACGGAGATCCGAATC	ref_5822_new	26	50	23	23	34	26	28	19	36	25
AAATGCCGGAGATTAG	ref_5822_new	114	132	108	94	153	106	144	93	140	102
TCGCTAAGATCTATTC	ref_5822_new	0	0	0	0	0	0	0	0	0	0
GCCAATCAGACCATGC	ref_5822_new	23	41	20	16	48	14	31	13	41	9
ACCTTAATCAGATACA	ref_5822_new	11	17	13	10	21	10	21	17	28	6
TGGACGCCTTATTAGG	ref_5822_new	15	22	12	12	27	7	26	13	19	15
CTGAACCGCAGGCTAA	ref_5822_new	26	33	40	22	41	26	36	20	47	24
GTATTTGCTTTGCCCT	ref_5822_new	30	33	30	12	40	21	46	24	46	19
CAACGATGCTGCGCGC	ref_5822_new	100	133	118	90	151	105	160	72	151	76
CGTTCGACTTTTTTAA	ref_5822_new	24	41	26	23	43	16	41	13	49	23
TAGCCAGGAGTTCCCT	ref_5822_new	4	10	6	0	8	0	9	4	7	2
ACCGTTGCCCGGCGGT	ref_5822_new	35	43	36	33	57	38	48	31	51	33
CCCGCACCTAGACTGT	ref_5822_new	13	44	41	31	64	27	37	17	60	28
TTCTTGTGTCCGTTAT	ref_5822_new	4	21	10	10	10	5	15	5	23	7
TGTTCAATTTGCGTCG	ref_5822_new	8	11	9	3	10	7	17	8	8	2
TGTCCGGGCGGGCTGC	ref_5822_new	0	0	0	0	0	0	0	0	0	0
ACCGCATGGTGCGTAT	ref_5822_new	0	0	0	0	0	0	0	0	0	0
ACGTCCCGTCATTAAT	ref_5822_new	7	25	2	10	22	6	19	0	18	6
CTCGCTTTGCTGTGCG	ref_5822_new	0	0	0	0	0	0	0	0	0	0
GCACCCATCCAGCCCC	ref_5822_new	25	30	34	17	47	20	39	18	39	19
GTGGCCTTTCTAATTT	ref_5822_new	24	37	13	15	54	27	25	29	32	24
ATGGTCATTTATCCTG	ref_5822_new	108	126	105	81	146	68	179	94	172	82
TTCAAGGCAGATGCGT	ref_5822_new	20	32	22	30	48	21	43	21	39	15
GCGTGACCAGTGCGTG	ref_5822_new	65	58	81	68	73	54	84	61	76	58
AAATTCTTTTCCCACG	ref_5822_new	6	6	8	9	7	6	9	7	12	2
TCATAACGCGCAGTTT	ref_5822_new	0	0	0	0	0	0	0	0	0	0
CTTGTTAACTGGTAGC	ref_5822_new	29	46	20	17	56	7	35	15	47	17
ATGCCGGGCTATTAAT	ref_5822_new	0	0	0	0	0	0	0	0	0	0
GATCTTAAGTCGGGCA	ref_5822_new	27	50	46	33	60	24	54	24	52	32
GTCACTCTGGATAGCA	ref_5822_new	4	8	9	5	22	4	10	8	14	5
GGCGTAACTTTGCGAA	ref_5822_new	23	55	48	39	65	40	49	27	59	43
CAATTTCACGCAGGAC	ref_5822_new	25	59	46	45	55	24	61	29	66	33
TTACAATCGTTCAGCT	ref_5822_new	14	45	21	15	36	20	39	15	44	24
ATGCTGCCTGCTGAGG	ref_5822_new	0	1	0	1	5	0	1	2	1	1
GAGCCGGTGTATGCTT	ref_5822_new	10	25	9	8	20	11	16	10	32	11
TTCATTTTTTTGAGGA	ref_5822_new	7	25	8	8	26	5	19	3	24	6
TATACAGTCTCTCTGT	ref_5822_new	0	0	0	0	0	0	0	0	0	0
GCACCAGTACTTATCA	ref_5822_new	0	0	0	0	0	0	0	0	0	0
ACTAGAGTATTTAAGA	ref_5822_new	65	155	73	51	145	44	172	64	189	66
TTAGGGTCATGCACTC	ref_5822_new	51	83	89	67	119	77	121	52	121	71
CAACATGGAGTGCGAT	ref_5822_new	223	370	247	168	351	238	367	191	368	193
AGCGGAACTTTGACAG	ref_5822_new	0	0	0	0	0	0	0	0	0	0
TAAACCGAAATGATTA	ref_5822_new	0	0	0	0	0	0	0	0	0	0
ACATAGGTTATGCGGA	ref_5822_new	22	53	30	26	51	36	57	31	55	29
AAGTGCACTCGCTCTT	ref_5822_new	1	7	3	9	5	1	12	5	7	0
TGGCAAGGTTCCTGAC	ref_5822_new	0	0	0	0	0	0	0	0	0	0
TGTTCCTAATTATTGT	ref_5822_new	32	41	19	24	33	18	46	25	47	21
AAACCTTTATTGGGTT	ref_5822_new	36	60	40	39	44	29	53	17	59	34
GGCCCCTTGAGCGCTC	ref_5822_new	0	0	0	0	0	0	0	0	0	0
ATCGCGTATTGGGCTC	ref_5822_new	4	4	1	1	11	1	5	2	6	5
ACTTCAATCATCCTGA	ref_5822_new	29	63	38	27	80	28	72	33	67	34
AGTGTATAAAGAGGGG	ref_5822_new	5	25	8	19	20	11	19	13	23	9
TCTAGAGTTCTTTAAT	ref_5822_new	0	0	0	0	0	0	0	0	0	0
CTTTTTAATCGTCTAC	ref_5822_new	0	0	0	0	0	0	0	0	0	0
GTGGCACTAATGACGC	ref_5822_new	40	66	47	58	80	28	91	31	92	40
AGCTCGTAGTCTCTAT	ref_5822_new	3	8	9	6	4	4	4	7	10	5
GGGCAACATCATTCGT	ref_5822_new	10	25	16	11	30	25	31	18	38	11
TCGTGCGTCTAGTTTC	ref_5822_new	4	12	3	8	10	1	10	4	14	7
CTGCCCGTAATTCGAA	ref_5822_new	0	0	0	0	0	0	0	0	0	0
TCCGGTGGTCCCTATC	ref_5822_new	4	25	17	4	30	5	29	4	22	3
CCATTCTTTTGTGTTA	ref_5822_new	65	133	70	51	160	64	131	62	144	63
AGTCAGTGAGATAATT	ref_5822_new	40	63	45	25	64	43	76	28	61	24
CCGTTGGACCTGCACT	ref_5822_new	0	0	0	0	0	0	0	0	0	0
TCTCATACGGGCTAAA	ref_5822_new	0	0	0	0	0	0	0	0	0	0
ATTTTATACTGCCGTC	ref_5822_new	0	0	0	0	0	0	0	0	0	0
CATTATGCTGGCCCAA	ref_5822_new	3	7	2	5	11	5	8	3	7	0
CACAATCTTTGATATT	ref_5822_new	4	9	7	7	10	5	9	2	14	4
AGTTTTGATCCACTCT	ref_5822_new	15	21	16	9	20	10	14	12	24	18
ACTGCTACACCGGACC	ref_5822_new	0	0	0	0	0	0	0	0	0	0
TCCGGTTTACCTCAGC	ref_5822_new	7	23	12	10	10	21	12	5	23	9
CTTTATTGCGAGCATG	ref_5822_new	18	25	24	8	33	13	35	15	19	17
ATTTGTCGATATGAAT	ref_5822_new	16	11	12	12	6	9	18	13	14	11
CCCCGTTGAGGACCGT	ref_5822_new	22	109	35	46	107	33	101	30	118	19
CGGGACTCATCAAACA	ref_5822_new	143	249	154	156	241	115	260	131	270	130
TCTTCGATGTTGATGC	ref_5822_new	26	47	39	35	59	28	46	31	33	23
CTCCTTCAAGCCTTGG	ref_5822_new	30	52	41	21	46	21	72	25	64	24
CCAATCTTTTGTGTTA	ref_5822_new	0	0	0	0	0	0	0	0	0	0
TATGCTATTGACGAAT	ref_5822_new	68	102	84	69	106	60	104	67	125	67
CTCGGATTCGTCGGGA	ref_5822_new	11	26	8	12	19	12	12	16	35	13
AAAAGCCGGAGATTAG	ref_5822_new	0	0	0	0	0	0	0	0	0	0
GCCACCAGCAGGTGCC	ref_4282_missing	0	0	0	0	2	0	5	0	2	0
CCACCGGCTCATGAGA	ref_4282_missing	2	16	7	2	15	6	18	6	21	0
TCGACGACCTGCTCTG	ref_4282_missing	12	37	17	19	33	18	32	7	31	8
TGAGTTCAAGACATCA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTGTGTGCATGC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGCTTATTTGAGCCCG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TTTCGGCCTCTCTTAT	ref_4282_missing	10	9	12	7	15	6	8	8	9	5
GGACACATGATAGCAG	ref_4282_missing	7	16	12	8	16	12	19	2	10	9
TCGCCGTACCCCGATC	ref_4282_missing	1	2	1	1	3	0	2	3	2	0
ATCAGCCTTTACTATT	ref_4282_missing	4	9	9	5	6	4	8	3	15	3
CCGGTGTCACTAGCGT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CGAGAATCGCAGCATC	ref_4282_missing	18	19	24	23	32	13	20	20	26	16
CTCACCTTGTTATTTC	ref_4282_missing	3	3	3	5	4	4	1	2	3	1
ATGCGGGCCTGGATTA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TATCGATCCAAGTACG	ref_4282_missing	4	10	12	6	17	6	17	7	14	5
ATATTTCCTCCATGAT	ref_4282_missing	7	21	9	15	15	17	13	15	15	11
TGGCGGCTGTCTCATG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CCGCCTTATCGTGCCG	alt_4282_missing	4	4	2	1	3	0	6	5	3	1
AGTACATATAATGTCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GATATGTTATAGGCTA	ref_4282_missing	15	24	15	22	30	12	29	11	22	14
GCAACCGAGACCCACG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GCTCTCTCAAGACGTC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TCGGAAGTTTGGTTCA	ref_4282_missing	25	27	21	11	31	27	52	17	31	14
ATTTGCCACTAGCTGA	ref_4282_missing	48	72	50	39	82	33	87	27	87	41
AATTTTCGTTGCTACA	ref_4282_missing	7	8	12	4	9	0	7	5	7	1
AGTGCGGGTGTTAATG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTGTCAACCGTTGTAT	ref_4282_missing	3	8	12	2	11	9	13	8	14	2
CAAAACAAGGGCGTTG	ref_4282_missing	5	11	5	4	9	8	9	8	12	9
ATGGGAGATTCGTGTC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AATTCCGTTCGTGGTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TATGATTTGGGGGATT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CAAGTATAACGCTACG	alt_4282_missing	42	62	50	47	78	36	79	39	61	42
AGAGGCAACATATGGT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CCTCCGGTGCGCCCCG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GCGCTTAATAGGAAAT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GGTAGCCCTATTATTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ATCATGCGCACGCAGG	ref_4282_missing	6	14	8	2	11	12	5	9	15	13
AGTTCCTCTCTTCTCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GCATAATCACGATTTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTGATGCCCTTTTCA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TTGGTGCCAAACAGCT	ref_4282_missing	26	56	30	25	52	44	68	31	48	34
TTATCGTCCCGGGGTC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTATACAGCATAGGTA	alt_4282_missing	16	41	16	24	30	29	26	17	35	17
CCACCTGTACACCTCG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TTTCTTTTTAACCCGC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTTCTTTCCGGCTATC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTATGGAATTTTATC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TTAAAGCCGCTCTTTA	ref_4282_missing	10	9	12	8	16	10	15	3	16	3
CTCCGATCATTTTCTC	ref_4282_missing	13	16	13	13	15	2	16	9	13	7
AAAAGATACATGCCAC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GCTTGTTCCGCTTATT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TCTAATCTGTAAGAGA	ref_4282_missing	16	28	25	18	31	20	40	25	25	15
CATAACAATTGCACCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AGTAACTACGTCGAAT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TAGACTCTCACCCCAT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GTCATCACATGGCTCT	ref_4282_missing	7	5	10	7	4	2	7	5	6	7
TTTGGCCGATGGAAAC	ref_4282_missing	7	21	5	7	22	1	20	7	24	4
CCGATTTTGTCACCCA	ref_4282_missing	11	16	2	8	18	11	17	9	18	5
CACGTCTAGGCTACTG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GATACCCGACTTATTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GTTTCCTTTACAAGAC	ref_4282_missing	13	15	12	7	21	16	21	10	32	10
CATTGCGCGGCTCCCA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGCCTCGGGAAGCCTG	ref_4282_missing	28	23	34	24	26	21	23	25	32	26
CACACCAATAAGATCA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CAAGACTATGAACGCC	ref_4282_missing	8	15	6	12	13	5	5	6	13	6
GTGCTTAAATTTCATA	ref_4282_missing	11	23	27	7	21	11	23	11	20	17
ACAACTAGAATCAGTT	ref_4282_missing	3	5	7	2	7	7	2	1	8	5
TTCCTACCTTCTACTG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GACGGGACTTATGCAT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTACATTGTTTACGCC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTGGTACTGTCGTAG	ref_4282_missing	16	38	23	17	41	20	31	14	37	22
CTCAATCGAGGACAAA	ref_4282_missing	4	15	10	5	7	5	5	5	7	4
CCAGCGTCACAAGTAA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGCGGACTCAGTGTTA	ref_4282_missing	8	10	7	3	7	5	7	11	12	10
TTTTCTGATGGAGCGT	ref_4282_missing	28	31	26	24	29	16	30	14	42	22
CATGGAGCGTATGCTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTACCCCTCTCTCGT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTGACATACTGCTCG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTATACCATGTGGGTG	ref_4282_missing	5	11	6	4	12	2	10	3	6	8
TAGGGCCACTAGGTTG	ref_4282_missing	6	8	15	8	16	3	4	4	11	4
TTGTGCCGTCGTTTGT	ref_4282_missing	3	9	7	9	8	4	11	5	13	4
GTCTCTGAAGCGGGTT	ref_4282_missing	3	8	3	6	1	5	1	1	6	2
CTCGTATGTGCGTCAA	ref_4282_missing	8	14	9	9	13	6	6	4	10	4
CCTACGGCCTCTCACT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GTACTTCTGTCCTAGC	ref_4282_missing	18	18	14	14	23	10	18	6	28	17
ATCTATCTGCAGCTCG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AGTGAGTGCCAGATGC	ref_4282_missing	16	16	20	11	24	11	26	7	18	17
TAGCCTCTCACCCCAT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GCATTAGTATATGGAT	ref_4282_missing	27	26	15	15	19	10	20	18	18	12
CGATTCGGTGGCGTTA	ref_4282_missing	2	1	0	2	2	1	1	0	1	0
TGTCTACGATAAGCCC	ref_4282_missing	7	19	13	7	13	2	18	7	17	10
TGATGCGGGGAAACGG	ref_4282_missing	26	50	41	40	34	44	58	35	44	37
ACGCTCGGATAAATCC	ref_4282_missing	6	5	3	6	3	5	5	7	11	4
AAATTATTGGTTGCAG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ACTGATCCGCTTTTTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GGCCCTTAGACCCTTT	ref_4282_missing	1	0	1	2	1	2	5	1	2	2
GCGTATAGAGCCGGCT	ref_4282_missing	10	9	4	8	8	7	9	6	12	8
TTCTTCAGCATTGAGG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AATCCAATTCGCAAGG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ACTGTATTCGACGCCA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ACGAAGGAATTCGGAC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AACTGCATCTCACGTG	ref_4282_missing	6	10	6	6	2	5	5	5	3	4
ATCTTGTCTATGCGGT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GGCTTTCTTCCCGACT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CGTAATAGCGCCAAAG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTGCCCAGAAGCCATT	ref_4282_missing	10	20	7	8	14	9	24	17	13	10
CCTTCATTTGCGTGCA	ref_4282_missing	0	2	1	1	4	1	4	3	5	1
CAATTTAATCTAAGTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CGCAGGTCCGCAGGTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TCCTTTGGGGAAATAC	ref_4282_missing	0	2	3	1	2	1	2	2	2	0
CGGAATTGATATGGGC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTCTACGTCGCG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTTGCTTTCTGTACT	alt_4282_missing	5	14	8	9	17	17	22	8	14	12
GAGGCCCGTTGAAACG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CCCGGTGCGTCGCTGG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTCGACTACCACTGAA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CGCCGAATGACTTATA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CATGGTGTTTGTAACA	ref_4282_missing	31	39	35	30	41	17	30	17	42	25
GTTTTAAGTCTACCTG	ref_4282_missing	33	46	42	33	42	25	29	21	45	17
ATACGCTTTGAATTCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TAGCTTTCCCGTCCTA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GCTTGGATATTGGCCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ATGATAATTTTTTTTA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ATGTATTGGAAAATCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ATAAACCCCTCGACCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AGGGATGCAGTCGTTT	ref_4282_missing	5	2	5	6	10	6	13	4	14	5
CGGTCTAGTGCTGTTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GTCTACGATCTGCTTT	ref_4282_missing	3	1	4	3	5	2	2	1	4	0
GCGAGTATACAATCCA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTGTGATTTTCTTGTG	ref_4282_missing	13	15	16	15	25	10	16	16	17	18
CCTATTCGATATGGAT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
GAGACGCACTCGGTTC	ref_4282_missing	8	10	10	8	14	8	10	7	15	9
GACTTGATTTAGAGTA	ref_4282_missing	4	8	3	7	6	4	9	4	8	5
TCGCCGTTAGTGTAAG	ref_4282_missing	2	7	4	9	18	8	13	2	17	9
ATTCACTAATCCGTCC	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AGGCGCGGCTTGAGCT	ref_4282_missing	22	25	17	16	21	20	15	14	37	16
GAGCAGTCATACAGAT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
ATTTTAGCGCTCCTCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TTCGCGAGAATCGTCT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AGTGCGTATCACGGGT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
AATTACAGGCGCAGTT	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTTCTTTTGCTTCCCT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TAGCGTATATAATTTC	ref_4282_missing	0	9	6	8	8	4	5	3	5	4
CAGTTACCACACCTGA	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
CTTACTTTTCAATTTG	ref_4282_missing	0	0	0	0	0	0	0	0	0	0
TCAGGTCTTATCTCAT	alt_2374_fdr	70	52	59	56	39	73	74	51	48	71
TTCTGCAGTATGCCCG	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTTTTTTTTGTCA	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GCAGCTACAAAACTAC	alt_2374_fdr	13	19	24	18	23	11	16	24	25	14
TCTTACATGGGCCACT	alt_2374_fdr	46	47	52	47	52	44	62	61	65	57
AATTGTGTTAAACGTG	alt_2374_fdr	10	18	15	14	12	12	18	12	15	13
TGTCTTGTACATTTGT	alt_2374_fdr	17	24	29	20	21	18	24	18	27	14
TGCATCTCGTTTCGCC	alt_2374_fdr	4	7	12	11	8	6	10	5	4	3
GCCTCGATACTACTAT	alt_2374_fdr	23	30	30	32	32	20	32	20	34	21
TAACGTGGTGTTTTCC	ref_2374_fdr	96	110	117	106	86	85	93	70	106	76
GTTAGAAGAGCCAACA	alt_2374_fdr	85	104	101	79	104	94	76	70	100	65
TATCGCTTTAAGTTCT	alt_2374_fdr	25	23	39	28	23	28	21	27	15	23
AGAGCTTTCCGATTCT	alt_2374_fdr	40	37	56	35	39	28	45	39	38	28
GTTGTTCTTCTACGGT	alt_2374_fdr	94	117	151	107	129	100	133	91	151	86
AACGTGCTACTCCTGT	alt_2374_fdr	29	28	17	23	28	24	29	19	23	25
GGGGCAAAGTGTGTTA	alt_2374_fdr	33	48	45	35	34	23	44	45	50	25
AGGGGCTCCAGAACGC	alt_2374_fdr	17	22	13	20	15	12	22	17	11	19
CGTATAGTCTAGTCAT	alt_2374_fdr	59	83	79	65	102	71	101	70	119	54
TACTTTGGGTTCTGAC	ref_2374_fdr	86	112	103	111	121	64	119	101	101	79
TGCACGTGGCTAAGTA	alt_2374_fdr	0	1	2	0	4	0	4	1	0	0
TCACCATGGTCTTGGC	alt_2374_fdr	5	3	2	4	1	1	4	3	5	3
TATGCCCACCTCTATA	alt_2374_fdr	166	155	192	170	188	146	191	157	196	139
CATCTACTGCTGAGCA	alt_2374_fdr	1	1	5	5	7	1	1	0	4	1
GCTGGTGTTTCTGCAG	alt_2374_fdr	10	18	36	17	16	22	16	17	24	19
ACGCCCGTTGACTGTA	alt_2374_fdr	21	56	19	12	69	9	89	15	71	16
GTGGGCGATTCCCGTT	alt_2374_fdr	34	30	37	23	15	19	31	22	26	26
AAGATCTCGTTGAGTC	alt_2374_fdr	20	13	24	12	19	17	21	10	17	10
GTTATTTATGATCTTA	alt_2374_fdr	10	8	17	7	9	11	11	10	15	12
ATACCCCCAGCGATAG	ref_2374_fdr	59	73	70	63	67	67	57	51	57	49
TGTCAAAGGCTCCTAA	alt_2374_fdr	23	21	18	24	25	15	20	16	21	16
GGCTGGAAGAAGACCA	alt_2374_fdr	33	47	48	39	49	36	49	41	50	36
AGCGTAGCTTGAAAAA	alt_2374_fdr	108	75	108	88	96	81	87	93	91	59
CGGGCGATATTATCGC	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTACCCTAAAGCA	alt_2374_fdr	3	4	1	2	2	6	7	3	1	1
GATTTCCTAGTTACGC	alt_2374_fdr	20	15	22	14	20	11	18	10	17	5
GCGAAGAAGCTTAGCC	alt_2374_fdr	28	11	14	10	18	11	18	10	10	10
TAGAGTTACGGTTCAG	alt_2374_fdr	17	8	11	9	9	17	13	9	13	9
GTACCACCATTGTTGA	alt_2374_fdr	61	53	60	54	66	65	87	52	69	49
GCAGAGCCCCTACAGA	alt_2374_fdr	11	17	12	8	11	13	19	19	17	16
AGCAAAGTCGTCTAGT	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTATCGGCTGGTG	alt_2374_fdr	63	56	64	45	52	66	48	50	64	48
ATTGCCCTGTCCCCTT	alt_2374_fdr	34	50	48	40	27	27	42	37	37	39
ATCGCACGTTAATATA	alt_2374_fdr	2	6	3	3	2	11	8	6	4	3
TGCTTCGTTTCGCCGG	alt_2374_fdr	9	8	10	7	5	5	14	6	9	5
CTCTTACCCTGACTTC	alt_2374_fdr	18	39	33	38	54	34	39	24	47	26
GGTACTGAGTGCCATG	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GTCACTGTAATATGGT	alt_2374_fdr	87	90	101	89	101	75	106	94	112	70
GGCGATGAGACTATTC	alt_2374_fdr	27	30	36	27	18	33	17	24	19	34
CGTTGGGCATACCCAC	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTGAGTCCGCGTG	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
CATATAAACTCGGTTG	alt_2374_fdr	42	46	61	35	38	37	55	37	39	32
CATCTCATATGGTATC	alt_2374_fdr	39	41	53	39	34	47	42	36	53	42
TCTTTCGCTACAAAGG	alt_2374_fdr	28	36	31	25	37	19	40	19	35	12
GTTTTTTTTTTGTCAC	alt_2374_fdr	24	26	32	32	33	36	19	30	28	20
CTGGTATCGGTGCAGC	alt_2374_fdr	55	52	64	47	51	49	65	42	59	51
AAGGCACGTCAAGGTA	alt_2374_fdr	4	2	4	2	2	1	4	0	4	4
GTAGGGTAGTTTTGGG	alt_2374_fdr	13	20	21	40	27	24	24	12	20	21
GAGCCCGGCGATCTGA	alt_2374_fdr	39	36	55	51	37	29	33	45	39	39
CGTTCGGCTGTCTTCA	alt_2374_fdr	49	55	64	43	60	51	80	45	63	48
TAATGTATTTGCTCAG	alt_2374_fdr	45	55	65	43	42	33	57	41	45	33
ATTGATGCGGACTTCA	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTTTACGGCCTGT	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGTGGTAATAGGG	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTGCAGTTCCGAA	alt_2374_fdr	12	11	25	7	18	11	17	18	16	17
TACGGTCTGAACTACT	alt_2374_fdr	38	66	52	41	60	33	55	47	67	39
CCATTCTTTCTCCCTA	alt_2374_fdr	20	15	13	24	19	20	25	11	14	9
TTAACCCAGTGTGCTC	alt_2374_fdr	7	7	9	7	5	10	9	3	9	9
TGGCAAACGCTGAACA	alt_2374_fdr	15	10	25	10	21	15	14	14	19	19
AATCTGCATCTCTTGA	alt_2374_fdr	29	30	51	28	39	49	38	25	54	34
TTCTTCGGCGGGTATT	alt_2374_fdr	8	7	7	3	7	5	6	6	6	6
CGCTTTGTGTTTACTA	alt_2374_fdr	2	7	4	4	5	2	4	3	4	1
ATTCGCAGGCGAGCAA	alt_2374_fdr	103	82	146	101	111	92	106	79	109	87
CGCTGCTTACTCTCCC	alt_2374_fdr	0	0	1	1	0	0	0	0	1	0
GGTCATAGCAGCGTGG	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGTGTCGTTAAGC	alt_2374_fdr	64	51	67	50	54	47	48	54	53	61
GAGGTCTAGAACAGTT	alt_399_missing	0	0	0	0	0	0	0	0	0	0
TTATACACACTATGCG	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GAACTATCCACCGTAA	alt_2374_fdr	18	23	20	20	14	16	22	12	14	11
TTCTACTAATCGCGTC	alt_2374_fdr	66	67	106	80	93	73	81	73	82	62
GTACATGACTGTTCAA	alt_2374_fdr	23	18	20	10	17	24	25	21	22	28
AGTAAGCCATGTTTTC	alt_2374_fdr	19	12	13	20	20	10	24	19	30	15
TAAACCGATTCTGCGT	alt_2374_fdr	158	165	164	145	195	150	162	166	197	125
GCTGGTCGATTGTTAT	alt_2374_fdr	50	62	59	49	58	39	57	35	67	42
TATGGCTACTGGGAAG	alt_2374_fdr	217	237	280	217	222	255	223	215	248	218
GGACTGATCTCTGGTT	alt_2374_fdr	7	13	17	16	12	12	14	11	12	10
GGCCCGTCTCTGCTCC	alt_2374_fdr	38	43	42	39	35	36	35	52	40	27
CTGACTCGAGGGTCCC	alt_2374_fdr	38	32	47	26	31	35	28	30	39	28
TCGCTAGGTGGATCTA	alt_2374_fdr	232	238	309	285	216	252	244	222	273	213
GTATTTGCCTTCCGCG	ref_2374_fdr	79	71	97	83	88	60	84	54	76	67
AGTTAGGTCAGGTTTT	alt_2374_fdr	42	53	66	69	52	53	56	41	62	50
CCCGTCCTGACGTCCC	alt_2374_fdr	17	16	16	23	17	26	16	18	24	26
TCGCTGTCGTCGTGAG	alt_2374_fdr	15	18	16	24	20	20	16	15	17	10
GATTCTACGTAAGAAA	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCGCCCCTTTTAC	alt_2374_fdr	14	25	15	24	15	11	23	13	24	16
TTTTTCTGTATATGCC	alt_2374_fdr	37	49	51	42	38	42	49	36	44	29
TGCGTCATACGGATTT	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGCCTTACACGGC	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGTGTTTTCATCC	alt_2374_fdr	21	23	26	25	16	14	24	23	28	16
ACTGCGCTTGTACCCT	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTCGCGCCGCGTC	alt_2374_fdr	45	51	61	52	29	51	51	34	59	41
GGTCAAGCTAGTGATC	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTATGAAGCTAG	alt_2374_fdr	102	121	149	120	89	124	124	82	124	98
TATGCCGTTGGCTAGA	alt_2374_fdr	15	15	14	14	15	6	18	7	17	6
TGCACCTAGATCGCAT	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTACAGGTTTAA	alt_2374_fdr	7	16	11	10	9	16	10	17	10	17
AAATCATTAAGCCCAA	alt_2374_fdr	23	36	41	37	31	30	28	33	37	30
ACTGAACGTTTGCCGC	alt_2374_fdr	26	30	34	39	23	34	30	31	26	38
CTTCCGCGCTATACCA	ref_2374_fdr	40	66	58	47	63	37	75	34	74	40
TGACTGATCGTCTCTA	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGAAGTTTCTTGC	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGATACTTAGAAT	alt_2374_fdr	37	31	33	34	46	30	42	45	35	29
AGTGTGCAGTATTCAA	alt_2374_fdr	75	89	76	58	99	73	92	91	102	73
CTTGCTGAATACAGCG	alt_2374_fdr	6	1	5	9	5	5	4	2	2	3
CAGAATTTCGACTACT	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGCTACGCTCTCC	alt_2374_fdr	0	0	0	0	0	0	0	0	0	0
AAATCCGCTCACTCCT	ref_244_fdr	87	47	114	87	32	72	45	77	48	77
AGGACTTTTTTATGTC	ref_244_fdr	110	53	113	117	64	83	55	126	74	108
TGTCTGAGCTGCCGTA	ref_244_fdr	0	1	4	1	0	2	0	1	0	2
TAGGACGACGCGAAGA	ref_244_fdr	558	342	794	707	338	602	346	609	388	585
CAGTACACATTACACA	ref_244_fdr	95	87	138	126	97	107	90	102	114	89
GTGTGTTGCTACGTCG	ref_244_fdr	138	61	192	197	96	136	96	144	78	139
CAATAGGACTACTTTC	ref_244_fdr	42	30	51	43	23	28	19	56	19	25
GTCTCAGCCCATTGGA	ref_244_fdr	65	39	69	56	40	58	29	59	36	59
CACCATAAAATTCATA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGCTTACGCTATG	alt_244_fdr	184	66	211	186	59	171	59	166	86	142
GCCATATCTATTTTGG	ref_244_fdr	52	37	88	56	43	62	37	63	32	58
ACGTAATCCCTACGAT	ref_244_fdr	2	1	3	3	1	9	1	1	3	4
ATCGACCGTATGTTGA	ref_244_fdr	49	32	73	60	39	53	34	42	40	58
CAGTGGATGCGCATTA	ref_244_fdr	49	17	60	52	21	44	28	60	37	35
GGTTTCCTCTCAAACA	ref_244_fdr	10	6	16	15	9	19	5	13	7	8
ATCTAAGGGCGATCGC	ref_244_fdr	1	0	0	4	0	2	0	3	0	1
CCAGTCATGTGAAAAT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGACCTTAGCAC	ref_244_fdr	30	44	29	22	40	27	52	24	40	25
CCGAGTAATCGGTAAC	ref_244_fdr	36	29	47	49	37	34	37	50	20	41
CCATTCAGTCATACTA	alt_244_fdr	113	166	226	180	179	135	144	172	197	137
TGTTTATATCTTGGTT	ref_244_fdr	6	7	10	6	4	2	4	2	6	6
CTCCCATATCTATTGT	ref_244_fdr	2	38	4	2	36	4	30	2	30	2
GGTTGGGTGATGCCTA	alt_244_fdr	77	33	115	85	53	84	51	92	61	94
TGTTTCGGTTGCATGC	ref_244_fdr	100	56	121	87	73	104	63	88	50	86
GGTAGGTAATAAGGTT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TATTCTTTCAGTGCCG	alt_244_fdr	53	14	44	50	20	52	19	43	10	39
ATGCTGACAAGGAATG	ref_244_fdr	27	18	48	27	17	47	15	28	11	22
TCTTCGACTGTGTCCA	ref_244_fdr	60	39	51	57	30	45	42	50	30	51
TTATCATGATTTGTCT	ref_244_fdr	60	31	100	73	35	72	40	52	33	78
CCAATTGGATTAAAGG	ref_244_fdr	84	30	98	101	40	74	48	74	54	65
AGATTCCTCTCCATGT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TGCATACGGTACCGGT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTTCTCATATTTT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTAGTGTCATATT	ref_244_fdr	74	46	99	87	51	92	43	76	38	66
GCCCGAGGCAAGAGTT	ref_244_fdr	69	38	68	86	37	60	32	66	36	63
GCTTCGTCGACCCAAT	ref_244_fdr	12	6	11	9	10	6	8	14	10	6
TCTAACCGAGGCCTGG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGTCAGCTGCTCT	ref_244_fdr	13	6	17	17	11	4	11	18	7	8
ATGGCCTTTCCCTTTA	ref_244_fdr	233	98	300	250	82	204	92	221	121	197
CTAGTGCGTCCCTGTA	ref_244_fdr	809	502	934	770	521	713	515	702	525	695
GGTACGCTTATTCATT	ref_244_fdr	82	43	123	125	47	110	65	88	50	99
CCTGGTGCTATGTCCT	ref_244_fdr	3	17	3	4	18	4	13	4	25	1
AATCGTACTATTCTTA	ref_244_fdr	20	9	30	42	25	47	23	41	19	35
CTCTACTGTCCAGTGT	ref_244_fdr	27	16	30	23	14	15	14	21	10	22
CCCCCGTGGGTCTCCT	ref_244_fdr	96	30	105	98	38	69	32	65	41	65
TGGCGATTACCAGGGA	ref_244_fdr	34	22	56	31	14	40	21	35	18	20
TTGACGTTTCGAGCTC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTCGTCTGTTTCC	ref_244_fdr	145	63	176	127	84	121	73	125	81	110
CATTAATACGCGCATT	ref_244_fdr	27	28	43	31	18	34	8	38	15	31
TTCTTCCACGCAACCC	ref_244_fdr	116	47	103	84	55	65	60	65	54	85
ATCTCCCGGGCTCTCG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTTACCCGATTTGTGA	ref_244_fdr	57	45	93	91	62	71	56	84	64	65
GGATGGTTCGGTATGG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GATAAAGTCTTCTCAT	ref_244_fdr	40	28	59	34	25	55	24	33	26	42
GTATACTAATGATTAA	ref_244_fdr	86	40	116	96	46	102	49	72	34	58
GGGTACACCGTGGTTG	ref_244_fdr	56	61	89	78	43	72	39	71	55	64
GCATATCCGTGTCTTA	ref_244_fdr	542	268	743	616	312	515	338	534	320	446
CCTCCTTACGATCTAC	ref_244_fdr	23	26	41	44	16	26	19	27	21	24
TAGGGCTACCCATTAA	ref_244_fdr	15	8	25	12	10	9	10	14	10	10
GCTCTCATTTAGCAAG	ref_244_fdr	30	23	27	32	16	31	17	27	17	29
GCGGATCGACTTACGT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTGTCCCGTGGTA	ref_244_fdr	9	5	14	16	4	9	11	22	7	11
CCGGCTCGCTAGATAA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGTGTTAACAAGC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCCATCAAACAGA	ref_244_fdr	48	25	50	36	22	41	34	45	25	42
ACGTGAGAGGCAGTCC	ref_244_fdr	48	22	36	43	16	30	26	34	21	39
CTGGCTCTTTCTCTCT	ref_244_fdr	158	85	175	174	78	138	77	139	85	124
TCTCCGAAGAATTATA	ref_244_fdr	75	50	106	108	51	73	40	95	29	75
TTCCCGTGACAATGGG	ref_244_fdr	16	11	24	15	10	15	5	22	15	16
TTCTTAGAGCATATAA	ref_244_fdr	15	9	19	12	16	20	7	14	12	12
TTCCGTATGGTGTTTT	ref_244_fdr	6	8	13	14	7	10	8	13	9	9
TCAACTTCAGGAAGTG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCGAGTCTTTAGT	ref_244_fdr	67	40	78	63	44	53	41	40	41	60
TGACGGACTCATTTCT	ref_244_fdr	54	44	64	49	35	65	20	56	22	74
TCGCCACTTCTCAGCA	ref_244_fdr	95	57	154	80	51	79	56	62	72	100
GGATTCCAGGTTCTTC	ref_244_fdr	71	54	116	75	50	67	49	74	53	50
TAGTACTGAGTATGCT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TGAACGTCCTAATTAT	ref_244_fdr	6	0	1	5	6	4	1	4	2	6
GCACACGTTCCCTCGC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTATTCAGATTATAAT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CGACTCTTGGCCATCC	alt_244_fdr	1	0	1	1	0	1	1	2	0	0
AGTGCGTCCAGGAGGG	ref_244_fdr	15	11	20	26	15	17	9	18	17	14
ATCGGTGTTTTTCGAG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
AATTGTCAACGATTTT	ref_244_fdr	81	44	105	62	57	79	49	81	64	77
ATTCCGACTTAGTTCA	ref_244_fdr	80	49	91	69	56	51	48	66	45	72
AGCCTTCTTGATGTCC	ref_244_fdr	94	44	91	79	42	87	50	76	46	82
TCCGCGACCCACCAGG	ref_244_fdr	2	1	5	0	1	5	0	0	1	1
TATTTAGATGCGGTCG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTCAGTCAAAAAC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GTTTATTGATACCGGT	ref_244_fdr	10	4	6	10	2	8	2	4	13	3
TCTCAACGTCGACCGA	ref_244_fdr	201	107	180	158	121	154	113	157	113	132
TTGGGATCCCACTTTG	ref_244_fdr	48	28	75	47	30	48	42	49	39	50
ATACGGCGGCTGTACA	alt_244_fdr	53	24	41	38	17	44	13	34	23	34
CTATACAGGTAGGGCC	ref_244_fdr	109	66	120	110	68	95	79	126	60	81
TTAATTCCTAACACGT	ref_244_fdr	4	3	4	8	6	2	4	4	3	7
GCCGTTTCCACCTTTC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GGATTTACTCCCTTAG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CCGGGAATAGAATTTG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GGAGACGTGTGTCTTG	ref_244_fdr	38	18	49	36	25	29	30	21	37	33
TCATAAGTGATATTCG	ref_244_fdr	35	13	39	32	14	42	18	29	25	30
TTAGTGGTATTATGAC	ref_244_fdr	20	13	31	19	6	22	10	21	9	16
CATCCGGGCTCTGCAC	ref_244_fdr	27	12	23	29	14	23	9	24	18	15
TGCAAGTCGGGCGTTA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTATATTCTCAGT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTCTCACGGGAGA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGTATTGCCAGTA	ref_244_fdr	10	7	11	9	3	4	5	5	9	9
CACTACGTCCAATCGA	ref_244_fdr	47	34	74	55	45	48	31	62	40	59
ATTCGTTATATTGCAA	ref_244_fdr	8	8	13	15	4	11	7	10	9	8
CATTGACTTCTTCACT	ref_244_fdr	5	3	4	2	4	4	3	4	0	1
TTTTTTGTTGCGTTAT	ref_244_fdr	0	0	0	0	0	0	0	1	0	0
ATCACTTTGTATGTGT	ref_244_fdr	50	24	46	46	34	25	20	36	25	38
GCAAGTCTCATTACCG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAAGGATTGGTTC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGGTACTTTTCGT	ref_244_fdr	31	19	65	37	22	54	19	46	18	45
GATTATTTGCCACCCT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GTAACACATTACTGCA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CAACCCAATTGTTCTT	ref_244_fdr	64	73	86	73	88	64	90	65	94	58
GCACATGCCCAGTCTC	ref_244_fdr	45	23	44	42	22	31	16	38	26	31
CCATATTAGGGACCCG	ref_244_fdr	13	3	16	20	5	8	6	12	5	18
CAATTAGTGCTGCAGG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAACGAACGATTC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGGGGTGCAAAGC	ref_244_fdr	41	18	33	50	26	40	27	39	23	36
ACCCTCTTAACCAATA	ref_244_fdr	113	70	136	120	58	91	46	100	63	110
TTCGTGGCTAAGTATA	alt_244_fdr	212	89	271	241	109	218	93	195	101	202
TGGGGTCCTTTTAGTT	ref_244_fdr	55	43	104	62	41	70	54	48	30	59
TCCCCATCTCATTATA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGGTGGTTAGTCC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTTATATTATGTGCGT	ref_244_fdr	95	75	148	129	87	96	81	102	91	122
TAATCTCAGTCTACGA	ref_244_fdr	21	12	27	21	12	19	4	19	14	12
GTTGTGGTTGTACTAG	ref_244_fdr	167	104	243	179	100	166	115	156	105	129
TATACAACTACGCAGA	ref_244_fdr	15	18	24	22	13	20	21	22	15	11
AAGGTCGTCTGGCATC	ref_244_fdr	9	9	14	8	3	5	5	7	6	12
TGCCGGGTTGTCGTGC	ref_244_fdr	69	42	54	43	29	32	26	50	40	49
TACTGTAACGGACTCT	ref_244_fdr	41	15	56	33	30	33	26	49	21	42
CTTGTTCTTTAATGCA	ref_244_fdr	43	25	65	41	25	44	36	54	24	34
ATTAGCCAGGCCTATC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GAGATGTCAGAGTAAG	ref_244_fdr	21	15	47	28	14	21	19	22	11	27
TGATTGTTATTTTGTG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTTAACGCCGTG	alt_244_fdr	112	68	129	117	77	120	85	121	84	104
ATAAGCTAAACAGTCA	ref_244_fdr	134	80	152	135	73	141	75	134	57	124
TGCCGACCAGCAGGAA	ref_244_fdr	39	22	67	57	24	51	35	52	24	28
CCTTTTGAATCCGTAC	ref_244_fdr	1	9	9	7	6	3	7	5	8	0
AGGTCAAGGTGCAGAT	ref_244_fdr	38	16	40	32	21	36	24	27	20	33
CTGCTGGATTGACTTA	ref_244_fdr	0	7	0	1	7	0	7	0	6	2
GACCAGTCGTGAACGG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CTAAACGGTTTATCAA	ref_244_fdr	25	17	33	47	19	34	22	27	14	23
TGTCTTCAATATATTT	ref_244_fdr	45	22	61	59	19	40	27	46	13	49
GTCTGGCTAGCGGTTG	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTCACCATGCGTA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGTAACGTACACG	ref_244_fdr	54	35	73	47	31	62	30	49	30	43
ATTTTGGATAAATTCC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTCATTAGCCTGG	ref_244_fdr	2	0	0	0	1	0	0	0	0	0
TAATCAAACATAGAGT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTAACATCCCCTCTAT	ref_244_fdr	256	139	333	341	160	226	175	285	144	257
CATTCTGGTATAAGTC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GGGACAAATTGGCTCT	ref_244_fdr	22	9	27	18	17	18	10	16	7	15
CCCAGCATTACGCGCC	ref_244_fdr	54	37	44	48	27	42	36	39	49	41
GGACCCACCTTTCGTG	ref_244_fdr	94	51	86	94	50	85	56	79	59	82
CACCCTAACTGGCTTC	ref_244_fdr	74	63	115	91	61	101	60	99	55	83
CTGTCGCTAACGTGGC	ref_244_fdr	246	117	313	272	162	253	146	265	129	243
TTTTCGAGGACCTGAT	ref_244_fdr	104	59	138	116	67	113	62	113	62	87
TTGTATCCACTGTTTT	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCTTCACGAATTC	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
CGATGGCCACGGTGGC	alt_244_fdr	100	39	138	136	44	117	48	108	37	108
AAGTCGGTGCCAAATA	ref_244_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCTCGCACTCCTC	alt_244_fdr	102	67	110	96	60	80	80	89	73	84
GTTTAAAGTGAGAATG	alt_244_fdr	95	51	108	97	43	86	52	92	48	73
CCCGGCGCATTCCCCT	ref_6125_new	0	0	0	0	0	0	0	0	0	0
ATTCATCCTAAAAAAT	ref_6125_new	26	25	29	29	22	15	23	27	19	29
AAGGTTTTAGTAAGGA	ref_6125_new	0	0	0	0	0	0	0	0	0	0
AATACTCTAAAGTTCT	ref_6125_new	0	0	0	0	0	0	0	0	0	0
GTAGTTTTCCGAAATC	ref_6125_new	7	4	6	5	4	10	9	9	8	5
TGTCTGAGCGGGTGTG	ref_6125_new	0	0	0	0	0	0	0	0	0	0
AGTTACGATCTCAATT	ref_6125_new	14	17	19	29	15	20	21	17	23	23
TATGAAAGACCAAAGA	ref_6125_new	0	0	0	0	0	0	0	0	0	0
GTGTATTTCTAGCACG	ref_6125_new	6	16	7	10	3	13	17	7	11	5
CTACGATATCATTTTG	ref_6125_new	0	0	0	0	0	0	0	0	0	0
TACGAGCAGTTCAGTT	ref_6125_new	0	0	0	0	0	0	0	0	0	0
CCGTCACCTAAACTGG	ref_6125_new	7	15	14	8	16	4	18	11	29	6
TATGGCGTTGGTGTTA	ref_6125_new	2	3	2	2	5	4	6	2	4	3
TCTCGCCCCTGAATTG	ref_6125_new	18	38	32	24	35	22	29	29	24	24
GTCAACAAGGAATCCC	ref_6125_new	76	95	74	70	70	64	77	70	77	68
CTCCTTTGAGACAACC	alt_6125_new	32	40	30	37	48	29	41	22	49	32
ATAAGTACTTTTTTAA	ref_6125_new	47	35	51	38	57	40	48	43	55	33
AATAGGTTTGTTGAGT	ref_6125_new	10	13	9	12	12	10	12	4	9	4
TAACTGTCAATGTACT	ref_6125_new	0	0	0	0	0	0	0	0	0	0
TAGGACTTGAGTCTTT	ref_6125_new	6	16	18	8	11	8	16	8	20	8
GAAAAGGTTAAGCCCC	ref_6125_new	3	6	4	6	3	1	12	6	8	10
CGCCTTCGGTTTCCAT	ref_6125_new	0	0	0	0	0	0	0	0	0	0
ACCAAAACGGTCTACA	ref_6125_new	0	0	0	0	0	0	0	0	0	0
TGGAGTTCTATGGAGT	ref_6125_new	17	19	22	20	18	11	17	14	18	20
CCTGCTTAGCCTATGT	ref_6125_new	0	0	0	0	0	0	0	0	0	0
ATTATTTATCTAGAAC	ref_6125_new	0	0	0	0	0	0	0	0	0	0
GGTAAGACGTTCAAAT	ref_6125_new	6	9	2	9	6	2	2	2	9	4
ATGGACACAACTACAT	ref_6125_new	4	9	13	9	10	7	10	6	5	4
TCCTGCATATCTTGGT	ref_6125_new	23	35	22	18	26	23	30	21	29	23
GTACCATGTTGCCCAG	ref_6125_new	0	0	0	0	0	0	0	0	0	0
AACGGTATAAAAGCAT	ref_6125_new	0	0	0	0	0	0	0	0	0	0
GATAGCCATACGTTAC	ref_6125_new	6	15	19	10	12	9	20	9	28	9
CGCTAAGCTAAATCTT	ref_6125_new	2	7	4	7	8	5	4	3	0	0
AGCCCTGGAACATCGT	alt_6125_new	12	21	16	19	15	13	28	12	18	14
TTACGTCCATGCAATA	ref_6125_new	7	17	14	11	14	13	13	9	19	12
TAGTATTCAGGCGCGT	ref_6125_new	1	4	9	6	5	7	2	1	3	3
GTTAGCTTTTACAAGT	ref_6125_new	18	2	9	16	12	11	7	11	14	6
CCTATCATTTGGGTAT	ref_6125_new	4	6	3	8	8	9	9	4	14	8
CTATACTCAGCCGGCT	ref_244_upstream	122	89	136	159	78	118	103	105	109	121
ACTATTAGCCGCCACT	ref_244_upstream	47	33	56	34	21	48	39	48	30	28
CTATTGGTATCGGATT	ref_244_upstream	41	32	37	35	23	38	33	27	40	33
CTGATTTCCGTCGCAA	ref_244_upstream	39	34	52	46	29	36	30	35	23	37
TATCTAGTTAGAGAGC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GATCCTCAGCCGCCTA	ref_244_upstream	36	19	60	58	31	31	35	39	44	32
ACCTTGGTTGGACGTG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTTGGCCCCTACT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CCCGACAATTATTTGT	ref_244_upstream	23	11	28	17	16	18	23	16	21	16
AGGACTGTACTCATAC	ref_244_upstream	59	41	56	56	23	38	33	35	25	40
GCCGAGAGTTTGATTG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTGAGTTGCGACCCC	ref_244_upstream	119	62	123	124	72	117	74	92	57	77
CAAGTCGTGCTCTTGC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAGCATTTTAACC	ref_244_upstream	5	10	6	8	9	6	7	7	7	8
CTACTCACTCTTTCAA	ref_244_upstream	2	0	7	0	2	3	0	0	1	2
CCGTTTACTGGAAGTG	alt_244_upstream	44	26	56	50	23	39	27	37	33	33
ACTCTATATTCGTAGG	ref_244_upstream	53	20	58	52	33	25	25	47	36	41
GGTATACTGGCATAAG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGTCTCTCAGGGG	ref_244_upstream	71	36	83	60	38	56	50	71	42	72
TTGCTTCCTAGTCCAC	ref_244_upstream	175	137	207	188	130	166	133	180	143	159
CCGAAGCAACATTCAG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTCACGCCAATAATGT	alt_244_upstream	44	26	62	42	25	46	25	46	31	45
ACCAGACCCCGATAGG	ref_244_upstream	25	10	34	30	19	28	18	40	13	23
AGTAATGACCGGTTGG	ref_244_upstream	77	55	94	93	58	99	56	83	66	68
CTAAACTTTCTTAATC	ref_244_upstream	20	18	31	21	15	24	21	27	14	30
CTAAGCTGGAGAAGAA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTCGATGAGTGCT	ref_244_upstream	2	6	0	2	4	4	11	3	9	1
ACGTGCTGAGATAGCA	ref_244_upstream	9	4	6	5	3	3	3	5	2	3
TCCTTTGTGCAAGTGG	ref_244_upstream	16	22	29	27	24	21	15	20	24	14
GGGTACGAACACTACA	ref_244_upstream	65	37	66	66	41	60	34	59	29	59
CCTGTCTGCATGACGT	ref_244_upstream	1	1	6	5	1	1	0	0	1	1
GATCAGTACGTCTCGG	ref_244_upstream	36	27	38	30	23	37	18	27	23	35
CCCGATCTGCGTCAAC	alt_244_upstream	240	126	263	239	170	211	150	224	133	204
TACTGGCGTCGGGCCT	ref_244_upstream	124	78	130	111	50	125	68	122	57	117
AGCTACCTATTCAATG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
AGGATGGCTCAGTTAT	ref_244_upstream	116	84	152	137	71	116	88	127	87	104
ACTCCTCTCCCAAGCG	ref_244_upstream	101	109	121	102	117	90	85	93	124	112
GAATAGTAGCTTAGCC	ref_244_upstream	49	29	69	47	27	58	27	45	31	45
TTTGCGATGCCGTCCT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGGCCGTATCCGT	ref_244_upstream	71	26	57	64	48	61	37	58	33	51
CCCACGAGATTTTCAG	ref_244_upstream	22	25	36	32	26	30	30	32	35	29
TGAGGGTTTGTCAATT	ref_244_upstream	23	14	27	29	11	29	17	15	22	13
TGGCATGTCGTTTCGG	ref_244_upstream	53	30	57	58	31	50	22	55	36	36
TATATCCTTGCTATAT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTATAGGGCTATA	ref_244_upstream	257	145	313	251	153	201	184	196	180	185
AAACGTCGCCTGACTA	ref_244_upstream	52	39	80	62	43	62	32	51	72	68
TAGTAAAGTGGAATTT	ref_244_upstream	133	86	157	139	76	133	87	116	89	103
CTGGACTGTTCACCGG	ref_244_upstream	4	5	7	7	2	3	2	2	9	1
CACACAAGGCACTGAT	ref_244_upstream	34	34	44	47	22	33	24	43	16	33
GTTGGATCTTTACTTT	ref_244_upstream	27	26	36	26	25	29	32	31	25	30
CTGCCAATCTATCGTC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCTTTGTCTCTGC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ATTATTGGTTCGGCTC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CATTTCTCGCTTCTGG	ref_244_upstream	139	53	145	151	84	117	86	140	88	131
GCCCTTCTATGATTAT	ref_244_upstream	143	81	153	166	73	139	84	134	124	98
ATTCTTTCGGTTTGCC	ref_244_upstream	39	22	52	37	23	35	23	36	17	31
CCTGATACTCTAAGAG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGGTGCCCTATGC	ref_244_upstream	27	14	28	32	17	29	13	20	7	18
CCTACGCTACGGGCTC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGACCCCGATAGG	ref_244_upstream	54	27	61	37	33	42	33	50	37	39
CCCTTCGTCTACTGAT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTTCGCGACCGTA	ref_244_upstream	328	209	374	332	198	329	195	307	192	262
TCGTGTCATATTTTTT	ref_244_upstream	11	2	14	10	2	5	4	5	5	1
CCAGAAGAGTTATCAA	ref_244_upstream	16	10	23	15	9	13	11	18	14	11
ACTCACGAACACCCGG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGATGTGATTGGATTC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GCATATTAAACTAGGT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
AGTATCGCCAAAGACC	alt_244_upstream	5	3	6	10	3	2	4	4	3	9
ACGATACGTAGTAGTC	ref_244_upstream	54	21	47	35	25	32	21	25	14	42
AGCGCGAACATGCCCC	ref_244_upstream	92	51	134	105	57	97	48	87	81	86
GCTGTTAGTGTCCCCG	ref_244_upstream	64	49	77	52	43	49	42	49	56	55
ACGGTTCCGCTCGGAG	ref_244_upstream	1	1	1	1	0	2	2	3	0	2
CCATGTACTGATTAGC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
AGGCATGGCTACGGGA	ref_244_upstream	26	19	35	34	17	49	15	31	15	25
CAACTGGTTAAAACAT	ref_244_upstream	18	13	17	12	9	22	10	16	9	16
GGGTCCGAGGATGTAC	ref_244_upstream	19	11	33	24	9	26	14	19	15	22
TTCTCGCAAGCACATG	ref_244_upstream	49	40	61	53	31	52	57	66	51	47
GAGGAACATACATTCA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CTAATCCACTCTTCGT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGATTTTGTTCAC	ref_244_upstream	93	55	89	73	71	100	68	77	59	87
ACCTTGTGCCAAAAAT	ref_244_upstream	33	22	49	47	36	28	16	31	20	36
TCCGATTGCCTTGCCA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GAGGACGCACTGTACA	ref_244_upstream	19	19	30	26	25	29	24	20	17	29
GAAATGGATCTTAACT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CCCATTATCTTGCTTG	ref_244_upstream	3	1	4	5	2	5	5	3	6	7
AGTACCTCATTACATG	ref_244_upstream	2	10	6	12	4	7	8	5	5	3
CCCCCACTCTCCTCAT	ref_244_upstream	32	20	55	42	20	58	29	35	33	49
TTCGCACTTCTCTGTG	ref_244_upstream	5	5	5	5	5	5	8	7	7	3
TTCTCGGGTCGTGAGT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCCAGACAGACGC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTATCAGTACATCACA	ref_244_upstream	30	21	40	35	29	21	13	27	24	28
TTCATTGTGAGGTCAC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGTAAAGCGCATC	ref_244_upstream	130	64	152	137	74	124	84	126	92	105
CGCTGCCCTAACATTC	ref_244_upstream	140	77	185	138	109	149	101	149	99	146
ATGATAAGCCGCCGAC	ref_244_upstream	39	25	60	46	14	32	21	35	25	30
TATAATGTTCTTTTCC	ref_244_upstream	58	16	65	45	27	56	37	27	20	26
CATGTATGTTATAACT	ref_244_upstream	86	64	99	89	66	77	65	65	60	73
TTGTCGCCCTCGCCTT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TACGGCTCAGACGAGA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCAAGCGCACTCC	ref_244_upstream	0	2	1	1	5	3	1	2	0	1
ATCCTTGTTAACTATT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTCGCAAATCCGT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGGAATTCCGGAC	ref_244_upstream	81	49	125	89	60	85	56	92	58	85
GTTCGGAAATTTCGCG	ref_244_upstream	68	60	143	97	47	85	56	84	64	80
TCTGTTCCTTTTGCAA	ref_244_upstream	16	3	18	15	10	10	15	8	4	22
GCAATGTTTCGTGCAT	ref_244_upstream	15	13	22	13	14	22	15	19	13	26
TTCCAATGGCGGATTG	ref_244_upstream	261	134	292	275	133	237	121	258	131	266
TCGATCCGGTTCTTGT	ref_244_upstream	22	18	43	24	23	34	16	30	21	27
CATCTACTCGTCAAGT	ref_244_upstream	132	67	153	128	87	120	94	109	77	105
TGTCCTTTCGATGGGA	ref_244_upstream	33	16	49	36	31	29	21	31	25	37
TTCCACTTTCTTGTTG	ref_244_upstream	90	56	136	95	57	68	53	82	72	83
TTTCCTTCTCACACTC	ref_244_upstream	40	31	56	48	33	38	31	48	30	37
GGAGTGCTTTGGCTTT	ref_244_upstream	26	12	32	22	12	33	11	14	18	17
CTTGATCGTGGTTAAT	ref_244_upstream	97	65	123	122	52	92	69	80	67	87
TTCATCCCACTTGGCC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGCGACAGTGCAT	ref_244_upstream	287	236	329	272	244	239	257	266	240	262
GTGATAGGACCGATTT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCTCCGTTGCCCC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTTGGGAGGCGC	ref_244_upstream	83	46	132	106	41	90	52	89	55	106
CCTTGTGGCCTTGACC	ref_244_upstream	44	25	41	49	29	30	31	41	29	33
GTTAAGCGGCGAGGAT	ref_244_upstream	27	6	36	22	11	15	10	12	17	10
CCCGCGCTGCAAGATG	ref_244_upstream	26	32	30	32	27	36	40	34	37	30
AATGGATGAACTTAGT	ref_244_upstream	92	58	135	112	56	85	66	104	56	99
GCCGGGTGTAATCCGT	ref_244_upstream	45	23	33	24	26	31	20	38	27	34
TCGTAAGTAATTTTCA	ref_244_upstream	38	15	42	23	18	33	9	27	14	17
CGCGACCTTGGTATTC	ref_244_upstream	113	74	157	150	71	123	95	117	87	107
AGTTCAACGTTACCCG	alt_244_upstream	394	189	427	391	269	313	238	341	229	305
AAGGAATACATGCTAG	ref_244_upstream	16	5	10	8	3	10	7	10	7	5
ACTTATGGAATGACGG	alt_244_upstream	155	93	145	144	109	142	87	141	95	114
TGCTAATGGTTTCGTC	ref_244_upstream	61	24	103	74	38	63	37	47	22	54
GATGTACCCTTCAATG	ref_244_upstream	53	43	66	47	37	54	35	54	33	49
TCTAGACCAACTCGGC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTACTCGCAATCT	ref_244_upstream	8	12	12	18	7	8	8	10	8	10
CTCAACATGACTAATC	ref_244_upstream	1	1	1	0	0	1	0	0	0	1
ATGGTCACTCGTGCAG	ref_244_upstream	94	63	86	96	56	97	49	112	52	78
TTACCCCATCGACAGG	ref_244_upstream	31	17	25	24	16	12	11	25	11	27
TTTTCCTTCGCACATA	ref_244_upstream	325	152	364	341	183	323	187	295	191	298
TTGTAGTGATTTGCTG	ref_244_upstream	134	81	135	144	88	135	95	141	102	98
CTTTAATCCGGGGTCT	ref_244_upstream	8	6	12	9	7	8	11	7	8	6
GCAACCGGTGCTGCTC	ref_244_upstream	369	230	409	355	289	274	290	327	278	266
TGTACACTTCGGAGAC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGCTCTCCCGAAA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CTAATCCCCCCCGCGA	ref_244_upstream	75	41	78	74	35	61	42	57	64	66
TTCGCTGGTTATCGAT	ref_244_upstream	45	18	56	38	30	46	26	56	33	36
AGAGGAAATTGGTTCG	ref_244_upstream	48	26	68	65	38	62	49	64	45	54
GCTTCTCTATTAGATT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
AGTTAGGTAATATAAA	ref_244_upstream	60	45	78	59	32	74	36	62	45	51
CGCTCGACATAGTTCG	ref_244_upstream	10	5	3	5	1	6	5	6	6	7
GCGCTTAAATACGCGG	ref_244_upstream	43	24	49	37	22	24	18	48	16	40
GGTGTGTCAGCCGTAC	ref_244_upstream	21	24	39	26	16	28	21	19	17	22
CCTCACCTAAATTTGG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CAAACGCTGGACGACA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GGTGTAATATTTACAT	ref_244_upstream	88	57	91	66	55	65	78	78	53	83
GCCTTTCTTTCTAACG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGTGTTTCGTGTA	ref_244_upstream	13	13	16	13	18	12	17	11	17	16
TGGCCATCTCCTTTAT	ref_244_upstream	14	12	22	25	12	13	4	15	14	14
CAGTTCCTCTCTGCTT	ref_244_upstream	34	22	32	32	23	33	22	31	33	27
TTTTTAAACCTTCTTC	ref_244_upstream	49	40	65	75	24	46	27	32	36	48
CATGCTGATCAAGGTA	ref_244_upstream	29	9	30	19	12	23	7	20	17	18
TTTACTCTGGAGTACT	ref_244_upstream	80	82	137	84	50	93	79	78	87	85
AGCGGCCAGATATATG	ref_244_upstream	70	44	94	74	38	84	44	73	44	81
ATAAACCGGTTTCGTA	ref_244_upstream	60	35	92	81	36	53	33	73	33	42
TGTCTGTTTGGGTGGG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCCGGGAGTCTA	ref_244_upstream	101	60	120	92	89	104	73	104	74	102
CCATTTGGATCTTAGG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GGGTATCTTTCCTCCG	ref_244_upstream	284	182	310	264	152	297	169	250	161	227
AGGTGCAATCGAACCG	ref_244_upstream	59	48	63	52	38	44	37	63	37	45
ATTCCTACGTAATTTC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTAAGTTCAGCATCTC	ref_244_upstream	57	35	57	50	37	64	45	59	55	41
TTTAATGTACTTTCTG	ref_244_upstream	109	50	127	116	63	109	47	106	55	90
ACCTAAATCGGGCTTC	ref_244_upstream	7	6	10	10	11	7	5	9	3	10
GATAATGAAGGAGTTA	ref_244_upstream	728	385	881	720	346	637	389	648	379	649
GTTGATGGCACCATCC	ref_244_upstream	21	11	33	30	16	31	20	20	17	21
TTTCTAGTGAAGATGG	ref_244_upstream	33	14	44	30	20	36	16	26	15	34
TGGCGGTAGACATCTC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGTACAGTCGATG	ref_244_upstream	46	28	56	45	31	29	31	52	19	43
CATCTTGTAGCGGCCT	ref_244_upstream	187	77	248	216	86	161	102	176	99	174
TGGCTTGGCCTATTAT	ref_244_upstream	24	19	19	22	8	29	12	25	21	19
ATAGTTTATACTAATT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TATTCGCGGTTGAGGG	ref_244_upstream	4	2	3	3	2	5	0	3	2	6
CGCCACTGGTACTGCA	ref_244_upstream	55	37	86	60	52	55	37	55	29	44
CCTTGGCATATGCTCA	ref_244_upstream	26	9	18	15	8	12	14	9	10	22
ACACATTGTAGGGATT	ref_244_upstream	128	63	151	119	110	119	84	110	108	114
GTCCGCCCGTGCTCCG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGCATGCTCGGGCTAA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAGCCTGATGCCT	ref_244_upstream	91	68	122	115	59	82	65	89	82	98
TTTGCTTTACCGTACA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCTATAACCAGGA	ref_244_upstream	7	7	6	14	9	14	3	5	9	4
AATTAATACAGTCCTT	ref_244_upstream	64	52	69	60	56	60	50	56	48	46
CTAGCTGGGTATCACC	ref_244_upstream	45	41	60	61	30	38	44	59	43	45
TGCGATAGCATCTTGA	ref_244_upstream	57	48	72	53	33	53	36	60	49	43
CGGTGCCTGAACTGGG	ref_244_upstream	76	25	76	62	36	55	29	56	35	61
GACTCTGTAAGCGAGA	ref_244_upstream	4	4	11	7	2	4	2	3	3	8
TTGCTGTAATAACGCC	ref_244_upstream	50	33	64	36	33	44	31	56	33	37
CATTCACAATTATCGA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCTATTGCTATAT	alt_244_upstream	36	31	45	39	41	29	56	36	54	33
CACTGTCCTGAGGAAT	alt_244_upstream	754	391	1023	923	414	759	433	733	436	710
ACTTCCGTGTCTCGCC	ref_244_upstream	180	119	244	218	123	184	127	216	135	176
TATTCATATCATGGTA	ref_244_upstream	141	87	167	145	109	150	85	169	102	108
AATTCTCTTTCTAGGG	ref_244_upstream	23	18	32	8	9	14	5	17	8	13
TGTGGGGTTCAGTTGC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTGCATGATCGTA	ref_244_upstream	17	19	21	29	16	15	24	15	10	22
CCTGCCTCAAATTGGG	ref_244_upstream	615	423	701	573	393	571	489	492	494	480
GGTTGTGTTCATCACC	ref_244_upstream	28	23	37	34	19	20	21	26	29	30
AGTATTCATATTACAT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTGGCGTCTAACA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCGACCATTGCGT	ref_244_upstream	74	51	66	69	51	55	53	56	54	49
GGCCTGGTGGAGTTAT	ref_244_upstream	116	62	126	106	60	115	73	114	59	125
GCACGTGGTTTTAGGC	ref_244_upstream	32	13	38	23	32	25	20	23	35	25
GCACTGGCGATTAAGG	alt_244_upstream	115	63	117	125	66	98	66	69	71	82
TCAGATTGTAGTTACA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTACGCTGAGCCC	ref_244_upstream	80	39	62	68	42	67	48	71	53	52
AATTGTGGTTTAGTAT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCAGCAGAGTTG	ref_244_upstream	145	85	167	187	106	154	83	169	95	118
CCATGGAAGAGTGATT	ref_244_upstream	95	66	126	98	66	91	65	89	74	80
TGAGGGATGTTACTGT	ref_244_upstream	50	31	45	35	24	45	32	37	27	40
TTTGTTTGCAACGCTA	ref_244_upstream	105	45	123	110	64	115	58	99	70	93
CATCCTTAGTGATGTC	ref_244_upstream	30	12	39	42	10	31	24	27	27	35
TTCGCTTGTTATTCGT	ref_244_upstream	533	314	731	579	271	497	274	527	328	488
AATTAACTTTGACAGA	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGTTCATATTTTG	ref_244_upstream	80	51	74	79	53	54	32	59	40	78
AGACGCATCTTGCTAG	ref_244_upstream	96	78	126	105	67	92	63	93	72	85
GGTCGTTCACAGCTTG	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTGGGTGTTTGGA	ref_244_upstream	44	30	65	56	32	31	36	54	40	53
TTCACTGTGAGCTCTA	ref_244_upstream	87	47	98	94	50	68	57	108	57	79
CCACTACTCCGACCTT	ref_244_upstream	42	61	76	62	58	53	61	53	76	53
CAGTTCATCGTCGTAA	ref_244_upstream	95	78	106	134	85	92	79	106	85	77
CCACTTGAAAACATCC	ref_244_upstream	14	12	23	23	9	16	4	14	11	11
TTCTCTAGTTCGATGA	ref_244_upstream	68	40	84	63	36	63	38	61	50	67
CCGTCCCGGCCTTTTC	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
AGACCCACCACCAGGC	ref_244_upstream	264	159	294	282	161	237	145	243	152	216
TATACGACGTGCGCAA	ref_244_upstream	47	22	62	35	25	48	27	45	42	35
GTTCCTATGTCGACAT	ref_244_upstream	0	0	0	0	0	0	0	0	0	0
ACAATTCACCTCTGAA	ref_244_upstream	6	3	8	6	4	6	4	7	4	6
AAGGCTATCTACGTTC	ref_1924_reverse	6	17	18	24	18	14	18	16	14	9
ACTATTGCAATCATGG	ref_1924_reverse	79	83	98	81	84	62	74	89	80	81
CGAGTCCATATTCTAG	ref_1924_reverse	27	21	38	26	34	27	26	17	35	31
CCTTAACTCTGAAACA	ref_1924_reverse	80	69	93	90	78	83	84	72	69	65
CTGGTTCCGCCGCCCC	ref_1924_reverse	90	53	94	84	63	75	62	57	73	80
CGGTTGCAATATTGTG	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
AATCTAGTACATCGGG	ref_1924_reverse	25	54	34	31	38	35	52	37	51	24
CGCTCGGCTTTGGTTC	ref_1924_reverse	4	8	10	3	12	8	13	2	15	2
CTACCATCGAGTCGCA	ref_1924_reverse	4	5	6	3	5	3	1	2	0	3
TTTTAAGATCAGCTAC	ref_1924_reverse	27	33	31	28	29	28	30	19	28	23
TCTTCCGCATCGCCAG	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGGGGGGTGTTTT	ref_1924_reverse	130	106	131	128	104	118	129	105	113	100
CACCTGACATTAGTTT	ref_1924_reverse	24	35	35	24	29	31	39	18	35	27
GCTGTGCTTATTATAA	ref_1924_reverse	40	26	26	34	34	17	24	30	26	28
TCCATTACTCTGTCTA	ref_1924_reverse	5	4	3	14	5	2	4	11	6	7
AACATACTCGGTGGGC	ref_1924_reverse	24	23	33	32	34	19	24	28	23	24
CTTAATTATCTTGTTA	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGCAGTGAGTTGC	ref_1924_reverse	64	58	51	70	46	47	52	58	73	36
ATTTTCTTGCAGTAAG	ref_1924_reverse	39	41	41	45	51	35	52	38	39	37
GTACGTGCTTTCGCCC	ref_1924_reverse	60	62	75	78	68	73	58	68	72	62
GATTCAATTCCTATAA	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGAGTACTCGCCG	ref_1924_reverse	56	50	61	62	55	59	55	50	80	44
TTTGTGAGTTATCAGT	ref_1924_reverse	66	67	72	67	71	75	76	88	90	71
GATGTGGGCTTTCGTT	ref_1924_reverse	29	12	19	10	10	10	7	28	14	13
CGGCTTATTCCTATGG	ref_1924_reverse	46	46	39	35	45	33	39	42	45	32
GTCACCGTTTTTGTCG	ref_1924_reverse	26	77	32	34	58	23	62	18	81	14
TTATATCATATGGTAC	alt_1924_reverse	287	270	336	334	275	293	296	238	327	262
GAGTAGTCTGGGGGAT	ref_1924_reverse	65	72	90	66	69	42	90	50	82	58
ACGCTTCTGTACCTGA	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
CACCCGTTGTGATTAC	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCATCGCTTAGTC	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
TGATTCGAACCGGCGG	ref_1924_reverse	43	59	32	35	36	29	48	24	47	21
ATCGATCCGACATCTT	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
TCAACAATCGTTACAG	ref_1924_reverse	67	65	95	60	44	66	90	51	73	53
TAAGAAGTGTCCTGCG	ref_1924_reverse	54	61	97	81	83	67	74	69	77	64
CACCCATGTGTTTATT	ref_1924_reverse	24	32	35	44	37	28	25	43	26	49
CTTTCACTTATTCATG	ref_1924_reverse	53	50	65	46	45	54	64	28	41	33
TGATTGTATTGGCACG	ref_1924_reverse	56	55	57	53	57	50	64	45	63	53
GTGCTTTGGGTTCGCC	ref_1924_reverse	5	15	8	9	12	7	10	15	9	9
TGATCAGGTAGCTTAA	ref_1924_reverse	46	53	57	45	49	58	68	42	79	58
AGTCTTCTCCTGTAAG	ref_1924_reverse	77	63	83	74	83	71	64	55	72	50
TTTCACCTCCCCGCAG	ref_1924_reverse	23	97	36	22	108	27	104	18	110	23
GTGTCCCTGATACCGT	ref_1924_reverse	63	56	89	68	63	71	73	70	67	56
CAATGCGATCTAATTC	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCGCCTTTAAATG	ref_1924_reverse	9	19	7	6	7	10	13	10	13	9
TCGTCAATTTCTACAT	ref_1924_reverse	18	26	28	23	21	29	26	14	30	17
TGCCTTCTAAATCGAG	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
TCATACTTTGGGATGT	ref_1924_reverse	7	10	11	9	11	12	11	9	9	8
TTTGATAGCCCTTGGT	ref_1924_reverse	37	49	69	41	57	52	58	32	46	47
GGCGTTCGGTATTACT	ref_1924_reverse	26	16	24	10	31	21	14	11	14	19
TCCCCTCGAGTCCGCT	ref_1924_reverse	48	113	87	56	114	61	133	55	156	44
AGGAAGAAGGTTCAGA	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
TTATGCTATTTGAAAC	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
AACAGTCTCGCGCACT	ref_1924_reverse	38	57	72	45	51	40	42	36	65	37
TGTAACTTGCTCGGAG	ref_1924_reverse	10	6	7	11	8	6	6	3	12	3
TTATTAAACCTGGTCT	ref_1924_reverse	0	0	0	0	0	0	0	0	0	0
CCTAGAGTGGTCACAG	ref_5365_upstream	60	33	73	73	37	68	51	55	42	76
CGATGATGACTGGTGC	ref_5365_upstream	11	3	12	10	4	15	3	17	4	13
GCACTCTCTATTGGCA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
ATGAACATGTGTAACC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCAGGGATGACTA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTAAATCTGCGGT	ref_5365_upstream	5	1	10	2	0	6	3	2	0	2
CTCACTCGTACTTATA	ref_5365_upstream	45	27	62	57	23	46	22	65	27	48
TCCTTTGTTGGTCTGG	ref_5365_upstream	29	14	23	34	11	19	16	26	12	21
GCCACGCCGAAGCTTC	ref_5365_upstream	51	32	71	69	39	53	31	62	41	54
TCTCCAAGAGGTCAGG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGCTACATATTTCAGG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGCCAATTTAGTCGCT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
ATACGGGACATCGCGT	ref_5365_upstream	18	15	32	35	12	28	18	27	18	16
GCCCAAAAAAGCAGCT	ref_5365_upstream	70	42	127	93	42	101	30	86	51	88
GGTGTTCTCCTACCCG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TAGATTTACTTACGCC	ref_5365_upstream	25	17	74	36	16	34	17	31	23	38
GTGCTAGTGTACATAT	ref_5365_upstream	4	0	2	4	0	4	0	3	1	2
AGAAAGGCACTTTGAA	ref_5365_upstream	12	5	16	12	8	10	11	20	7	14
TTGTGTATAAGCCTAA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTATACTTCATATTCG	ref_5365_upstream	37	12	31	36	13	22	20	29	19	32
CGAATTCGGTTGGTCA	ref_5365_upstream	14	10	20	18	11	12	6	17	4	15
AGGTCCGTATGGCCAG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGAATGTCATGAC	ref_5365_upstream	79	36	83	59	41	62	39	57	17	57
CTACCAGAACTTCCCC	ref_5365_upstream	19	10	28	28	10	18	17	19	12	19
CCGTATCTCGGACATT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CCCATACCCTTTTAGT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATGGTGAGCTAG	ref_5365_upstream	6	9	7	2	5	3	6	1	15	4
TATCCTTCCGAGCTTT	ref_5365_upstream	47	24	56	64	29	62	23	56	22	58
GTGGGGTATTTAGGTC	ref_5365_upstream	35	16	45	45	11	44	24	39	26	42
ATCTTTAGACTTAGTG	ref_5365_upstream	48	23	51	48	32	36	24	39	25	38
CTCAGGTGCTCACCGG	alt_5365_upstream	244	150	305	236	138	229	156	242	146	184
TCTCGCATCAAAAGTC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TACGCCTTTGTTACGG	ref_5365_upstream	55	35	76	72	43	48	41	50	35	30
TTCCCCCTATACTGAG	ref_5365_upstream	13	3	18	19	3	14	4	13	7	15
GAGCTTTGTACATATT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CCGGAGCCCGAGTCTC	ref_5365_upstream	58	31	61	70	32	38	33	52	44	64
TGGGCCCGGCGCAGCT	ref_5365_upstream	143	53	148	124	68	159	73	141	65	126
TTCTTCGGAGAGCTAG	ref_5365_upstream	965	440	1135	969	426	966	453	955	462	797
GTCCGGCATGACTCAG	ref_5365_upstream	287	96	321	285	125	229	134	279	126	228
TTTCTGTCGCATGGTA	ref_5365_upstream	36	8	33	23	10	19	13	24	15	24
TCCCATAGTCTACGAA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCATCATCTTAAATT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TACTCTCCTTTCCCCC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGATTACAGGACAAAT	alt_5365_upstream	206	120	275	252	104	255	104	214	136	192
CTGATGTTGCCACCGA	ref_5365_upstream	300	135	367	380	170	323	126	325	155	314
GCGACCTGGTCGGGGT	ref_5365_upstream	30	17	43	39	15	33	12	40	20	36
GCACCAGGGTTTTTTT	ref_5365_upstream	20	2	11	9	3	5	5	8	5	7
TTGTCGGTCTCGCACC	ref_5365_upstream	33	13	31	18	11	29	19	20	24	29
ATTCTCTATCAGACCA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTGCATCAGAGTC	ref_5365_upstream	40	19	44	33	14	36	19	54	30	38
TTAGTGTCAATTACCC	ref_5365_upstream	25	10	19	27	12	17	10	23	8	16
TTGTCTTGTCTTTGTG	ref_5365_upstream	107	45	140	117	64	118	78	111	75	100
ATATGCCATGTCAGAT	ref_5365_upstream	17	12	36	26	13	28	7	30	6	23
CTATAATCCTCATCCT	ref_5365_upstream	5	2	9	4	4	8	3	4	3	6
CCAGTGATGCATTGGG	ref_5365_upstream	191	125	252	209	93	182	130	194	121	171
GTCTCAATGTTTGTGG	ref_5365_upstream	59	33	74	79	29	77	21	54	47	57
GGCAACCTTGACCGAC	ref_5365_upstream	4	17	14	14	15	11	17	13	19	7
CCAGGTACCTGTCACT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGTTCGGATATAA	ref_5365_upstream	6	3	20	22	5	9	8	11	2	14
TGTCTGGTAACACTCG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TACCACACGCTGGTTC	ref_5365_upstream	74	33	105	76	33	58	53	71	52	78
GGCCATCTGACATTGG	ref_5365_upstream	47	45	58	54	29	61	33	60	30	65
CGACTTCCGGCTCAAA	ref_5365_upstream	135	52	161	149	66	164	61	144	53	128
TTTTTGCGCTTGTAGC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCAGTCTCTGTTG	ref_5365_upstream	8	9	12	10	10	4	8	5	8	6
CATAATAACGCAAGTG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACACATAGTATG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GCGGGGCTTATTGTCT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTGTTCGTCATCT	ref_5365_upstream	2	7	5	8	6	7	1	4	1	2
GGTCCTCATATCGGAT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGTATTCGTGCA	ref_5365_upstream	15	7	19	20	17	21	7	22	13	10
TTCCTGCTTTGACCAT	ref_5365_upstream	56	20	69	43	21	48	31	49	26	50
TTAAACAACAGCGAGT	ref_5365_upstream	35	31	44	55	18	31	17	48	14	54
GTGGGCATCAAGAAAT	ref_5365_upstream	13	4	13	9	2	5	4	4	1	5
GGCTGTGCCATGGGGT	ref_5365_upstream	4	4	4	1	4	1	1	2	4	2
TACGGCAGACCGGTAG	ref_5365_upstream	28	12	46	22	15	30	9	24	18	22
TTTCCCATTTTGAGTG	ref_5365_upstream	76	13	80	71	45	51	37	60	31	63
TTGTTGTTTGGTTACG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTAAAGACAAATAAAA	ref_5365_upstream	195	61	222	163	62	158	59	147	72	156
ATAACAGTTTTCGGCT	ref_5365_upstream	95	41	108	83	59	88	47	78	28	57
TACTCTCCTTTCCCCT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCCGAGAAAGTTG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCCTAAAGATCGT	ref_5365_upstream	93	28	108	85	35	79	32	66	49	77
GGTCATGCGGGCTTTC	ref_5365_upstream	36	14	32	42	17	33	21	55	20	35
TTCGTTAGACGATTCG	ref_5365_upstream	25	14	39	36	17	45	17	32	16	23
GTAGATGCACTGCGAA	ref_5365_upstream	8	3	8	10	1	8	5	9	4	7
GATGCCTATCTCCCAT	ref_5365_upstream	172	79	216	204	84	210	76	188	85	182
TGGCCTCTGTGTTTTA	ref_5365_upstream	35	16	36	24	19	26	31	28	18	29
TTCGGTCTCGGCCCTA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGCATTTTAAATTTTG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
AGAAAACAGGCCTCTA	ref_5365_upstream	38	19	51	47	18	33	13	43	11	43
ACAGCCTACTGACCTA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GCCATTTGTCGCTCAA	ref_5365_upstream	27	13	32	34	23	26	18	31	20	30
CTCCCTCATCTAAAAT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATTGCGTCACAA	ref_5365_upstream	47	27	56	46	28	43	35	45	26	50
GCAGTTTACTTTTCTA	ref_5365_upstream	43	23	49	39	24	37	14	37	24	32
TAATCAACGGAAGAAT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTATGGGCCAGTT	ref_5365_upstream	11	5	15	20	9	14	7	9	6	24
TCTTCCCGTTTATACT	ref_5365_upstream	31	15	38	34	12	33	16	32	14	33
CGTTTGGATCCATTTT	ref_5365_upstream	75	27	67	70	51	79	35	72	32	77
AATAAGTCAATACCCT	ref_5365_upstream	24	20	27	25	14	25	15	24	12	22
GCACGTTGTAACAGAG	alt_5365_upstream	273	142	319	283	167	243	160	232	181	268
TGGTGTAGGTACGATT	ref_5365_upstream	21	10	34	15	5	34	10	25	7	24
GAGGCTTGTGTAGACT	ref_5365_upstream	1	1	1	0	0	0	0	0	0	0
CTACATCTTTTGATAC	ref_5365_upstream	69	32	84	59	33	71	29	82	36	45
GGGTGCTACAATGGGG	ref_5365_upstream	30	14	35	29	20	35	19	49	14	34
GTCCTCAATGGACGAC	ref_5365_upstream	56	30	86	74	25	49	24	62	34	48
CCGATGTACCCTGGCA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CCCAGTTATTGGTAAT	ref_5365_upstream	30	7	42	38	19	36	19	41	18	31
TGTGTTCCGCATGGGG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCATAGCTGAATA	ref_5365_upstream	175	74	201	164	74	158	77	173	88	156
GCTGATCTCGAATATC	ref_5365_upstream	7	3	8	8	3	6	2	9	1	7
GCACTAATACCTTATG	ref_5365_upstream	15	5	13	18	11	13	9	15	7	16
CTCGGGTTCACGTGGC	ref_5365_upstream	37	16	17	28	15	29	19	30	16	23
TGCTCTTCATGTGATC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
AGGAATAAAATATATC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCTCTGCTTTGGG	ref_5365_upstream	59	35	87	78	23	92	32	49	36	41
GTCCCTTAGAAGGCCA	ref_5365_upstream	51	36	71	60	31	56	34	54	33	61
CAATTATGTTGTCATC	ref_5365_upstream	6	2	10	4	3	5	0	5	4	14
CCTGGTTTCATACTGT	ref_5365_upstream	5	29	4	5	14	8	16	5	10	3
CCGGCCGTTCGATTAC	ref_5365_upstream	9	37	15	14	33	11	38	14	36	5
TCACACTTTCCTCAAC	ref_5365_upstream	42	33	68	69	20	50	36	54	19	61
ACCTCTCCCTGTGAGG	ref_5365_upstream	188	100	226	165	107	189	87	179	100	165
ATAGTTTTTCATATCG	ref_5365_upstream	32	29	50	35	14	43	12	50	14	41
GCCGTAGGCCAGGCCC	ref_5365_upstream	40	10	41	39	19	27	23	26	14	26
GACGTGGTCCTCTACC	ref_5365_upstream	19	22	27	39	13	24	20	17	14	21
ACAGGGTCCAGCAAGC	ref_5365_upstream	175	71	255	229	82	179	101	159	91	201
AGCTTGCAAGTTACGT	ref_5365_upstream	19	15	29	29	17	20	10	22	11	15
TATGCCGTGTAAACTT	ref_5365_upstream	38	17	39	33	13	33	24	22	19	30
TTTATCGGTAAACATC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCGAGGATCCTTGAG	ref_5365_upstream	130	71	151	130	51	133	73	101	71	107
TTTTGAGCCGCTGATC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGGTTCGGTCTAG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TATAGCGTGGGTTAAG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCATATCGGCGGC	ref_5365_upstream	49	27	63	63	32	41	26	41	30	52
AAGACGCTTTGACGAC	ref_5365_upstream	3	0	3	5	1	5	3	4	7	4
TATACAATAAATCTTG	ref_5365_upstream	18	7	27	25	3	13	12	32	11	15
CACGCATCCGCCAAGT	ref_5365_upstream	17	10	29	35	14	20	6	31	12	24
CCGACCCGCCATGCTT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGTCGTATTTCCC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
AATTTTTGATCGACGT	ref_5365_upstream	13	10	16	10	4	16	8	13	9	23
TGGGGTGTTCGCCCTT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGTATATTCATCAGTT	ref_5365_upstream	9	4	12	6	9	6	3	7	11	9
TACCATTTATTAGTGC	ref_5365_upstream	80	40	80	63	24	62	18	74	23	66
CTGAAGATCTGTTTAT	ref_5365_upstream	188	70	226	193	92	171	86	192	101	163
CCTTTCCTTTCCGTTT	ref_5365_upstream	38	28	66	57	34	41	34	48	35	39
GTACCACTTTTCGCAT	ref_5365_upstream	147	51	154	153	59	102	61	105	78	125
ACTTACAGCAAGCGAG	ref_5365_upstream	135	43	171	162	63	156	58	112	78	116
CCATTAAGATTTTCAG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTATGGCCTCCCGCCG	ref_5365_upstream	45	32	60	51	35	47	25	42	41	28
GTCACTGGTGCCCCTT	ref_5365_upstream	42	37	66	61	38	54	28	64	35	33
GGCTGTTGGCAAGCAC	ref_5365_upstream	43	20	55	55	30	42	34	53	31	56
AAAAGGTTCGCCTGTA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTAAGCAACATAGGGC	ref_5365_upstream	20	7	32	32	12	23	14	30	6	21
GAGGCTTGCGTAGACT	ref_5365_upstream	1053	424	1255	1088	423	1019	529	986	519	943
ATTGCACTATCCGATA	ref_5365_upstream	27	24	39	38	12	26	10	28	28	22
TGTTCTCGCGATGCCC	ref_5365_upstream	3	5	7	6	4	10	2	3	2	2
TACTTATGCTGTACTT	ref_5365_upstream	4	0	5	3	1	2	0	1	1	3
CATCGGGCTGGATTTC	ref_5365_upstream	4	5	10	16	9	12	5	7	3	12
CATTTTAACATTAAGC	ref_5365_upstream	110	46	135	115	51	104	55	84	49	90
AGCGAAACGGTTAGGG	ref_5365_upstream	10	1	6	5	0	4	2	10	3	8
GCTAACAGCCCCGGCC	ref_5365_upstream	64	40	85	77	39	63	30	73	38	55
GTAAGCCGTCCAGTTT	ref_5365_upstream	314	136	349	282	157	266	196	275	164	238
TTGTAGCTCGCTGGTT	ref_5365_upstream	40	18	40	34	16	31	14	26	9	30
GTCATGCGTGTTTTCA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTCTAATCAAGT	ref_5365_upstream	315	157	390	385	170	322	175	330	186	303
TAGTGAAACTAGCTTT	ref_5365_upstream	51	24	51	48	16	45	18	42	14	49
CGTTGGAGTTGACCGA	ref_5365_upstream	26	12	31	34	18	27	11	32	11	26
TAGCCATACTACCCAA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTTCATGGTATGC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CCCACCAAGCGTTAGC	ref_5365_upstream	3	21	15	13	23	7	24	12	34	7
CCAGCGACAGCATGTA	ref_5365_upstream	17	41	22	22	44	13	43	22	41	12
AGTGCGTAGCAACGTA	ref_5365_upstream	170	56	195	141	77	151	72	143	94	135
ACGTCTTTCACGACAT	ref_5365_upstream	19	2	9	10	0	12	5	10	5	11
AGGTCCCGTGACACCG	ref_5365_upstream	21	4	18	22	6	16	6	10	6	15
TGGTAAGTCAGGACGC	ref_5365_upstream	23	6	25	25	7	10	6	15	6	16
TAATCAATCGAAGTGG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTTTCTGCCTGTG	ref_5365_upstream	13	16	17	18	10	14	11	15	10	15
GGATCCTCTTTTGGAC	ref_5365_upstream	22	12	36	22	15	20	14	27	14	24
CATACTTAGACTGAAA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGTCAGAGATTCG	ref_5365_upstream	43	30	59	39	19	60	31	32	33	32
TTCTGTCAGTCCAAGA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTTGGTTACTCCT	ref_5365_upstream	48	24	40	42	28	44	36	36	22	38
TCACGACCTCCTATTA	ref_5365_upstream	135	83	188	169	94	131	103	129	91	100
CCGGAGATTTAACGCG	ref_5365_upstream	73	45	105	85	40	66	48	59	42	88
CAGCCATACTACCCAA	ref_5365_upstream	25	27	48	44	28	46	25	35	28	40
CGCGTAATTTGCACCA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
ATATACAGGATTATGG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCATCAAGTAGTCGTT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CATATGCGGCACCTGT	ref_5365_upstream	9	4	23	17	7	10	5	8	8	15
GCCTCTTCAACCTGTG	ref_5365_upstream	61	24	59	47	21	35	24	42	20	31
TGGGCACAATACGGTT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTTATTTCGTACC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTTTGTACACATC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATTCGCATATTT	ref_5365_upstream	28	13	38	34	6	25	21	19	7	17
TTCCAAAAATCTAAGT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTAATTGCCTTT	ref_5365_upstream	94	37	128	76	25	72	47	52	61	74
GCTTCCTTTATCATGT	ref_5365_upstream	80	16	102	67	32	75	27	73	33	64
AAAGTCACCGCCAGTT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGTTCTTGAATTG	ref_5365_upstream	9	6	14	11	3	5	8	11	5	14
TTTGGCCGTAAGTAAC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGAACATGAAGAGTGC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GATCTATTCCCATGTC	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GATTTAGTCAAGCACA	ref_5365_upstream	12	4	21	18	4	20	14	19	3	6
CTCTTGCGAAATTTAC	ref_5365_upstream	53	20	53	53	25	51	30	48	37	31
GGGGCTACTGCAAACG	ref_5365_upstream	147	59	198	149	47	116	52	154	50	129
ATGTGTCCTCGGTCGG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCCGTGGATTATT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TAACCTCACGTACTCG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
ACGCACCTGAATGCGA	ref_5365_upstream	12	11	18	16	7	12	5	5	11	11
CCCTTGTGTAAGTGGA	ref_5365_upstream	63	14	56	67	23	59	22	34	35	43
CGTTAATTAGTGGTCT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCCTTGTAAATGT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
ATACCTTTCCTCTGCA	ref_5365_upstream	98	47	112	122	49	81	43	90	39	82
AGTTGTATGAACCATC	ref_5365_upstream	110	41	107	103	43	82	68	88	76	74
TCCTGTCCGCGCTTAG	ref_5365_upstream	47	20	42	41	26	46	23	36	22	20
CTATTAATCGCATCAT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCTCGCACTACA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAAGACCATTGCG	ref_5365_upstream	10	6	11	11	5	8	3	7	5	12
CGCACTTACTATACGA	ref_5365_upstream	22	12	18	19	8	20	15	28	14	20
GTTGCAGTTCCGCTGA	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTCTGACCCTTGG	ref_5365_upstream	20	12	26	26	28	16	21	15	29	7
CCTATCACATGTAGGT	ref_5365_upstream	78	37	66	79	30	74	49	53	27	73
GCTCGGCCGCATCCCT	ref_5365_upstream	14	13	26	29	8	16	8	23	7	14
CGAAGTCCAGTCGTAG	ref_5365_upstream	49	33	77	73	23	47	20	55	31	61
AAAGCCACTTGTATGC	ref_5365_upstream	27	11	26	22	14	31	10	24	16	29
TTTCCGTCCCTTGGGC	ref_5365_upstream	32	21	41	37	22	18	17	34	25	33
GCGCCACGTTGAAGAG	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTATACCGTCGTTATC	ref_5365_upstream	10	10	16	20	9	13	15	16	9	12
TAATGCCAGATTTGAC	ref_5365_upstream	127	60	165	166	70	150	76	126	74	126
AAGCTATCCTAAAAAT	ref_5365_upstream	5	4	26	8	3	18	6	13	10	6
ATATTTTGCCTTGATT	ref_5365_upstream	206	85	216	195	93	156	91	152	97	167
TTGTTCTATATCACAT	ref_5365_upstream	0	0	0	0	0	0	0	0	0	0
AACAGCCCACGGTCCT	ref_6058_new	21	35	24	28	36	18	42	15	36	26
ACCTGTTTGGCTTATA	ref_6058_new	94	83	108	91	95	78	89	75	86	84
CATGATCACCCAGAGA	ref_6058_new	3	10	3	1	3	2	4	6	9	3
GTTAGCCTGTCGCGTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CACAGGCGCCACGTGA	ref_6058_new	68	72	64	47	70	67	72	73	81	47
AATGGTTGCATGTTGA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GGAGGAACATCGCCGT	ref_6058_new	4	6	13	12	13	14	10	6	15	12
TCTGCTTCGCGGCCGA	ref_6058_new	7	7	13	7	9	2	11	6	9	16
AGTGTCAATCTTCCGT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CAGCCTTATATTGGTC	ref_6058_new	45	82	66	48	74	52	90	46	77	40
AGTAGAAGTAATTTCT	ref_6058_new	101	109	132	111	94	108	112	108	114	78
CCTGTCGTTTCAAAGT	ref_6058_new	3	0	2	6	2	4	2	1	4	3
AAAGCTCGAACTATTG	ref_6058_new	27	31	42	21	39	28	34	32	40	24
TCGATGAGCAAGTTAG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TGCAGCCGCTGTGCTA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TAGATTCAATCATGTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCTGGCCGTTTGTGTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TGTGTTGGCATCACAG	ref_6058_new	8	17	15	16	10	12	16	8	15	8
GCAACTGTTTCGTTTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCGAATTTCTGGGCTT	ref_6058_new	2	3	4	3	2	2	4	2	5	3
CCACCCCCCCTTTAGG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
AGTCCCTGGGTCGTAA	ref_6058_new	29	38	23	20	40	22	17	35	33	17
GCTAAAGATTACCAAG	ref_6058_new	22	23	30	20	21	21	25	20	28	15
CCGGCTTAGAGTGCAG	ref_6058_new	1	0	2	0	0	3	2	3	2	0
TATATAAGCGTCTCGG	ref_6058_new	21	41	31	27	26	26	39	35	43	31
TTATTAGTCCAATCGC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
ATACTCAGCCCTTCTC	alt_6058_new	10	16	10	13	15	8	20	10	24	9
CGCATGTGATGTCATT	ref_6058_new	77	81	74	80	72	65	76	74	76	49
TCCTTCTCACGACCGG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TCTAGTTGGCAAACCT	ref_6058_new	15	30	27	25	32	30	18	20	22	16
GGACTCTAGTTTGGTC	ref_6058_new	14	17	21	15	16	13	14	17	28	22
CCTCTGCGCTCTACCG	ref_6058_new	138	315	156	173	299	139	322	136	331	143
TTGTATGTTATGGTGC	ref_6058_new	7	15	19	11	13	10	11	9	15	9
GTGTAGTTAATGTTCC	ref_6058_new	31	27	28	27	38	38	20	25	29	19
CCCAGCCTTGGTTAAT	ref_6058_new	8	7	8	3	16	9	20	7	16	6
GTGGTTTCTTCAATTA	ref_6058_new	24	26	50	36	42	23	29	35	33	28
ATAAGGACGGAGACGT	ref_6058_new	23	11	14	18	18	12	18	11	17	15
ACTCTCACTTATTCTT	ref_6058_new	36	21	40	27	27	30	28	27	46	22
TTACTTGGATCGATGC	ref_6058_new	5	8	13	7	12	7	11	8	10	9
TTATCCAGTCTTGATT	ref_6058_new	1	0	3	2	0	0	1	2	0	2
GCGGTCTCCCACTTGT	ref_6058_new	7	16	16	5	16	3	18	7	15	6
TCCACGGGTTTACCGT	ref_6058_new	20	16	10	12	16	16	14	14	15	12
AATCCCCACGGGCAGG	ref_6058_new	20	27	38	25	16	20	23	31	24	20
GCTGGTCCCGAGCCGT	ref_6058_new	222	210	252	198	227	162	214	195	207	188
TAGATACATCCGAGTC	ref_6058_new	23	39	43	26	21	23	35	27	23	21
GTGTGTTGTCTGCCTC	ref_6058_new	4	3	10	5	6	4	7	9	8	3
CTGAGCTTCCTTCCGA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CCACTTTCTTATCGGG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TTGTCACCGATGCAAC	ref_6058_new	26	71	42	60	64	38	71	34	74	29
GCACTCGTTTGTATCA	ref_6058_new	13	13	14	9	13	14	11	17	15	8
TGCCGGCTTGTGATGT	ref_6058_new	45	37	48	60	45	64	44	52	39	43
ACGCATCGATGCGCGT	ref_6058_new	19	20	23	19	35	18	22	18	25	22
CACTAATTGGTGGCGG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TAATAAATGCCAGCTA	ref_6058_new	3	0	3	0	0	2	5	1	4	2
AGCAATGCCTCTGCCA	ref_6058_new	10	16	19	18	17	14	17	17	23	13
CGTGAGTTATACCCGT	ref_6058_new	26	26	30	25	25	21	30	27	35	16
TTTAACATCACGGAAG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCTAGCAATCCCACCT	ref_6058_new	4	20	5	5	4	5	9	4	9	3
TAGCAGATTTGGCCTG	ref_6058_new	31	40	44	31	44	31	41	42	44	32
GTCTCCGCCAGTTGGC	ref_6058_new	55	84	65	43	72	66	68	49	71	42
ACTCTAGTGTAGCTCG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TCCTTAAGTATCTGTT	ref_6058_new	31	33	26	24	50	36	26	27	32	24
TCATTGGTCTAGCATC	ref_6058_new	3	4	4	13	2	3	1	4	3	4
TTCGAGGTTTGAAGTT	ref_6058_new	2	2	2	1	5	1	1	2	1	3
CGGCTCAGGGTTCCCG	ref_6058_new	0	0	2	1	0	1	0	0	0	0
CGTCGGGGCAATCCCA	ref_6058_new	7	9	8	5	12	6	4	9	9	16
CTAGCCGTGTATCGCA	ref_6058_new	30	47	47	38	54	34	62	36	38	22
CCTATCTGGTCCTGGG	ref_6058_new	22	29	27	34	43	20	29	24	19	16
GGGTCTTTGTTGTTGT	ref_6058_new	22	15	30	25	15	24	22	14	13	13
CCAGGGGTTGTGGGTC	ref_6058_new	32	41	34	19	36	27	41	26	33	19
CTAAGTGTTTATTCTG	ref_6058_new	13	38	26	20	28	22	25	22	36	16
ATTAAGTCTCCGGACC	ref_6058_new	18	20	14	9	22	15	22	11	18	13
CATACCGTTTGTGACG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TGTCGTCGTTGCTTCC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TCTTTTCAGTGAATTC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CCGGGGCTCATACACC	ref_6058_new	12	47	11	8	56	8	60	10	54	9
CCATGCTTAAGGTTAA	ref_6058_new	9	20	7	12	19	10	16	9	5	6
AACAATTCGAATTACC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TGTGCGTTCATTTCGT	ref_6058_new	25	29	20	15	36	15	33	21	30	21
GTAAACTGCTTTCAGT	ref_6058_new	47	31	33	34	37	29	24	32	27	27
TGCCACGGGTTACGTC	ref_6058_new	45	44	63	39	44	32	45	30	36	53
GATGCGTGTGGATCGA	ref_6058_new	16	19	15	20	11	15	18	14	20	16
GCGACAGAGTAAATCT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CTACATATATTATTTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TATGATTCTTCGAGGC	ref_6058_new	14	11	18	17	17	22	12	18	12	17
AACTTGGTGGTTTTTA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCTTAGCCCAACTCTG	ref_6058_new	49	67	67	62	56	42	49	50	80	51
ATAGGGTGCAGTCTAC	ref_6058_new	19	27	28	27	34	22	29	30	24	28
ATCGCGAGTAAGGTGT	ref_6058_new	8	12	18	12	14	5	16	8	11	9
GTATCTACCCCCTTTG	ref_6058_new	23	21	12	16	27	12	22	8	22	10
AGGCAGCTCATCCTAT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CTTTGGATAAGTGTAA	ref_6058_new	15	17	9	11	19	10	28	15	23	9
GGCCTCTGTTTCCTCT	ref_6058_new	31	36	59	28	36	38	42	46	41	32
ACACGTCCATAGTGGT	ref_6058_new	58	51	61	54	58	36	57	48	57	47
CGCATAGAAAAAGCAC	ref_6058_new	39	46	54	46	38	44	55	44	46	27
TCTGGTGACATTCCTT	ref_6058_new	54	48	38	28	39	36	42	34	47	30
CAGGACATTCTTCATC	ref_6058_new	22	27	33	23	40	16	22	24	30	20
CGATCGTGCCGTTTGC	ref_6058_new	35	47	76	35	49	31	53	45	57	37
CCCGGACTTCATCCGA	ref_6058_new	2	0	4	5	6	1	4	9	5	5
AATACCTTAGGGGGAT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CCGGGTGCATCTCCTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GGACAACGAGGGGACC	ref_6058_new	10	10	16	10	12	10	13	10	13	14
TTACACCAAGATTGGA	ref_6058_new	16	22	27	9	15	13	20	23	24	13
CACGCGGCCTATTCAG	ref_6058_new	14	14	23	16	17	9	17	11	20	11
ATTCTCGGCTGGGCAT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
AGATCCTATGTTCATT	ref_6058_new	55	73	89	61	48	66	67	64	60	41
TTTAGATCCCGCGGCT	ref_6058_new	11	19	23	19	16	16	24	9	22	10
GTTCGCTTAGCCTTTA	ref_6058_new	124	145	137	126	141	126	157	147	165	117
ATACTCTGTGCATTTC	ref_6058_new	14	12	17	11	19	5	11	9	16	9
ATAATCGTTGCATGTG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TCCAAAATCGGTTGCA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
ACGACGAAGAAGTAAC	ref_6058_new	19	22	23	14	21	20	21	15	22	15
TATTCGTAGAGGACTA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
ACGGTCGCAAGAATTT	alt_6058_new	120	157	115	102	174	106	175	101	163	96
CTACCCGCGAGTTTAG	ref_6058_new	51	112	63	54	124	52	123	59	114	41
GGCACATTATTCCCAA	ref_6058_new	140	138	167	151	158	139	140	156	145	147
GATTTTAGGGGTAGTC	ref_6058_new	6	6	7	8	2	5	7	13	5	8
TGCCTCCTGACACGCC	ref_6058_new	31	27	42	18	27	30	27	24	24	22
GCAAAAGCTATTGGAA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCCCAGTTCCATTTGT	ref_6058_new	10	7	7	3	3	5	9	2	15	3
ACTAGTCCTGCGCACT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CATTTCACGCTGAGGT	ref_6058_new	38	33	39	40	42	30	47	28	32	35
TAAGTATGGGAGAATC	ref_6058_new	117	87	122	133	107	95	122	85	121	101
TATTGTTATTAGGATA	ref_6058_new	18	21	14	12	16	17	12	13	14	11
TCGTGGCACAGACGAC	ref_6058_new	27	20	32	35	39	26	26	29	31	21
TGATGTCGCTAGTGGA	ref_6058_new	88	62	92	71	66	74	89	65	80	62
TGATTATCATTCACTG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
AGCCAGCGGGTACGTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GTACGCCGAAGGCTTC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GTGCTAAAGATTGTCA	ref_6058_new	57	46	47	46	46	36	72	39	43	34
TAATACGGACGCATTG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CGGCACTGCATTGTAC	ref_6058_new	58	49	76	62	56	64	70	51	68	44
TGATGAAGATAGCGAT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CTCACGAGGTTCGGTT	ref_6058_new	47	35	58	37	44	39	48	35	43	42
CACGCAGATGGATCAT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CTGGATCAGGCTTAAT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TCATAGTTGGTTTCTA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCCTACCGATGCTGAT	ref_6058_new	95	122	157	143	138	92	137	104	144	74
GTAGCGCCTCAGTCTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TGTTTACGGACGAGTC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
ATCATTGGAAACGGTT	ref_6058_new	34	40	43	33	26	35	31	29	39	33
GTCAGTGACATAAGAC	ref_6058_new	10	12	10	22	13	14	15	9	10	11
CTCCTCACAGTCCTGT	ref_6058_new	22	36	39	29	25	33	28	35	23	26
CAGCCATTTCTAAATC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCTCCTTATTTTATGA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GACCCTCGATTTGCCA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TTCGAAAGCGGGGCTC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
ACCTGTGCGTATGGAG	alt_6058_new	152	175	218	175	195	152	195	156	227	157
CGTGATGAGGGTCTCG	ref_6058_new	21	28	38	20	31	22	24	15	32	22
AAAAGATTATTTCTTA	ref_6058_new	31	45	57	35	35	33	34	29	47	33
AAGCTTACAGACCGTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TCGGTATTGTCAGCTT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
AGGTCCACCCGGGCCA	alt_6058_new	85	69	106	65	89	90	91	73	76	71
GGCAACCGATCCTTGG	ref_6058_new	15	25	21	21	20	35	38	19	33	27
CGTCTGTTACTATCTC	ref_6058_new	12	23	9	12	18	12	18	22	25	10
GGCCTGCTTGCTGTTG	ref_6058_new	19	8	32	21	22	30	30	21	16	15
GGATAACTCTATGACA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
AGCGCTCTGTCTTCCT	ref_6058_new	16	17	29	19	23	23	23	18	24	16
GGTTCAGGATCTTTAC	ref_6058_new	114	109	128	142	122	105	120	100	142	119
CCCGGGCAAGGCGCTT	ref_6058_new	0	0	3	1	2	1	2	3	0	1
GCCTTCGCTACGGCAG	ref_6058_new	34	30	40	42	31	41	39	34	36	32
TTTTCAGCTATGGCGA	ref_6058_new	37	25	47	30	22	42	40	29	45	48
TATTGTGGTGTGGAGG	ref_6058_new	5	8	12	7	12	6	5	11	9	7
GTCTCACTATGGCCGG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GATTGTCGCCGCAGCC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GGTGGTAGGTATACGC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TAACCAACGGCTGTCT	ref_6058_new	17	19	13	23	12	22	22	20	18	12
TGTCGTGTCATCTTCT	ref_6058_new	4	8	7	5	4	1	8	6	2	4
TGCGAATGTCCTTTTG	ref_6058_new	7	15	11	14	11	4	10	7	10	5
GTTTCCCGATAAATAC	alt_6058_new	43	37	53	36	34	37	51	33	53	33
CTCGCACCTTATTATC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
ACACGTTCTTGACCTC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCTCCTTACTCTATAG	ref_6058_new	25	30	12	37	18	16	19	26	22	17
TGTTTTAGGCGCGTCC	ref_6058_new	9	14	13	12	21	10	15	8	15	8
AATGTCTTCTGATCGT	ref_6058_new	5	4	5	8	4	8	8	5	10	6
GTTGATGTCTTTTCTT	ref_6058_new	10	6	13	13	12	10	8	11	11	4
GCCTCGCTCCTTTACG	ref_6058_new	40	70	72	60	45	48	56	54	76	52
CATTGCGCCATGTTGG	ref_6058_new	42	42	61	49	39	41	44	52	38	50
ATATATAGTCTATAGA	ref_6058_new	14	19	18	8	21	18	19	13	21	14
ACGTGTCGGAATCGGT	ref_6058_new	3	3	4	2	3	0	2	3	1	7
GACGTTTCCGCTTCCA	alt_6058_new	42	27	33	38	29	38	41	35	44	41
TTAGCCGCATCTAACG	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GACAAAGCAGTTGGAC	ref_6058_new	5	2	10	5	2	5	7	5	2	1
ATCGTCATTTACTTTA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CCAAACAACTCTTAGT	ref_6058_new	69	77	87	105	78	61	88	82	86	59
GTCGCTTGAGAGTTAG	ref_6058_new	30	28	32	29	33	30	34	36	29	26
TACAAATGAACTCGCA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GTCTTGTCGTCAACAT	ref_6058_new	59	46	42	60	52	41	42	35	57	41
AAGATACATCCGAGTC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTCCTTATTTA	ref_6058_new	14	15	19	29	15	18	14	18	22	9
TCTGTTTTAACATAAC	ref_6058_new	3	3	10	12	5	4	9	4	6	3
AGCGTCATCAAGAATG	ref_6058_new	16	9	23	19	5	13	12	10	13	12
GGGGATCTCCTGCCTG	ref_6058_new	25	21	32	20	21	25	34	15	32	34
TGCGCAAGCGGATTTA	ref_6058_new	12	10	13	16	5	7	20	13	8	10
GGGTTTAGTCAGTGTG	ref_6058_new	19	30	34	25	33	29	31	39	21	19
TGTTAGGATCTTTATC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
TCGTCCCTATACGTAG	ref_6058_new	13	17	21	23	21	15	14	11	18	11
GAGCAGTTTGCATGTT	ref_6058_new	8	17	12	13	12	11	18	13	11	10
TAAGATTGCAGCATTA	ref_6058_new	22	17	12	12	17	8	28	10	13	12
CATGGGATTTAACGCA	ref_6058_new	14	14	20	18	15	15	10	14	21	5
TTCCCTTTCTCTCATG	ref_6058_new	12	26	23	25	27	25	29	28	31	16
TGCTGTAATCGTTTCG	ref_6058_new	25	20	28	24	30	30	23	40	27	29
TCAGGATACCGTCCGC	ref_6058_new	13	10	19	18	16	12	12	12	23	16
CCTTGCTGCGTGCTAC	ref_6058_new	0	0	0	0	0	0	0	0	0	0
CAGTCCTTGTCAGAAT	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GCCCCCCCAAGTCTTA	ref_6058_new	23	61	21	23	81	16	56	14	60	11
TGCCAGATCCCGATCA	ref_6058_new	0	0	0	0	0	0	0	0	0	0
GGGAAATCATGCCACC	alt_5793_new	34	50	39	56	55	45	53	40	52	50
TATATGACGCTGAAAT	ref_5793_new	187	191	198	182	183	136	203	136	236	149
TTCTGTGTGAATGTAC	alt_5793_new	29	34	27	20	21	20	43	28	38	20
TAATACGTGTTGAAAT	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TGCATAGAGTTGGGAA	alt_5793_new	13	15	11	9	22	9	24	12	16	11
GTAAATTCTACTCCAC	alt_5793_new	0	0	0	0	0	0	0	0	0	0
ATGGGATTAGCCCGCA	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TCATCGGTGGCCAACT	alt_5793_new	4	5	11	5	6	3	5	5	8	3
GTTGCTGGATCGGAAC	alt_5793_new	0	0	0	0	0	0	0	0	0	0
ATCATTCCACTCCGAG	alt_5793_new	109	119	103	105	142	94	156	78	131	88
CACTAAATCGTGTCCA	alt_5793_new	16	25	23	21	26	16	31	14	11	15
AGCCAGCTGTCGTTCT	alt_5793_new	0	0	0	0	0	0	0	0	0	0
CCTTGCTGGTTTGGTT	alt_5793_new	40	101	63	67	88	58	104	76	88	46
TTGTTCTACACCTCTG	alt_5793_new	58	115	80	70	111	63	110	60	108	69
TGTATTCGTCCTGGCT	alt_5793_new	17	29	25	19	20	22	32	16	31	24
AGATTGATCCTGAGCG	alt_5793_new	0	0	0	0	0	0	0	0	0	0
CATCCATAATGTTCTG	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TGCGTGATGCCACACT	alt_5793_new	0	0	0	0	0	0	0	0	0	0
GACGTTTGGCTTTCAT	alt_5793_new	11	15	11	9	19	13	19	6	12	6
TCTTCTTATCGATAGT	alt_5793_new	34	38	36	23	39	27	39	28	47	22
TATATTTTGTAGTTAA	alt_5793_new	8	13	12	4	10	17	9	5	7	7
GTTGGCATTACTATCC	alt_5793_new	32	54	47	29	50	42	50	29	56	33
TCGCTCCTCACTCCAG	alt_5793_new	102	221	147	146	232	121	238	108	260	106
AAGAATAGGTGTTGAT	alt_5793_new	37	48	35	29	36	28	49	28	44	28
GGCATGACCGCAATTT	alt_5793_new	2	1	3	0	3	2	4	0	3	1
ATGTGGACTAAAAGGG	alt_5793_new	0	0	0	0	0	0	0	0	0	0
CGTTCTTTATGCTCCT	alt_5793_new	19	11	12	14	24	16	20	13	19	21
CGCCGTGCTTAAGTCT	alt_5793_new	15	39	14	10	38	20	31	16	43	9
CGCTGCTGCATGGGGT	alt_5793_new	62	70	73	70	65	54	63	68	79	50
GCTGATGGGCTTTTAA	alt_5793_new	28	50	49	29	54	43	47	31	79	41
CAACGATTCACGCGAT	alt_5793_new	33	35	34	23	30	27	36	32	31	24
ATGTCTGGTCATGGAG	alt_5793_new	29	39	30	14	26	19	34	18	28	18
TCTTTTACCTGATTCG	alt_5793_new	9	21	14	13	23	9	18	9	24	3
CTGCCGGTTGAGATAA	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TTAATCCGTTTTGTTT	alt_5793_new	4	12	8	9	3	7	6	10	8	7
TCATGTTGATGAGTCT	alt_5793_new	20	26	30	20	33	26	37	10	49	20
CTTCCGTGCTTGGTTC	alt_5793_new	4	5	5	7	5	5	4	5	2	1
GGACTCTGCGCTGTGC	alt_5793_new	50	43	54	43	71	50	67	16	54	30
GACTTTAGTAGTCTGC	alt_5793_new	19	37	26	33	30	21	30	16	43	18
TAAGACATGTTCCTAA	alt_5793_new	7	7	8	9	17	9	8	10	10	11
CGATAGTTTTGATTTC	alt_5793_new	24	35	28	27	32	26	36	36	51	23
GTCTCCTAGGGAATAA	alt_5793_new	6	15	12	10	18	10	16	18	15	17
CAAGATCCCCCGACCC	alt_5793_new	17	26	29	19	25	22	28	23	16	16
GCCACTAATTTGAGCA	alt_5793_new	107	181	119	108	179	91	204	89	182	80
AGGGTTTAACGTTTAC	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TTTGCGATACTGCGAC	alt_5793_new	175	294	197	173	229	156	326	140	327	169
CCCGGAACATAGTGGT	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TATACGACCCGACCTG	alt_5793_new	21	35	24	26	33	16	41	19	35	28
TGCTGAAAGCCCTAGG	alt_5793_new	0	0	0	0	0	0	0	0	0	0
CCAAATGGCTTCCTAG	alt_5793_new	0	0	4	2	0	3	3	2	1	2
TAATTGCTGCGCACTG	alt_5793_new	4	8	2	3	2	2	1	0	4	1
TTCTTCGACAGTCATG	alt_5793_new	27	44	31	14	43	23	39	23	32	21
GGCCATGGGCAACAAT	alt_5793_new	10	6	9	8	5	1	7	10	7	6
TCCTTGATTAGAAGTT	alt_5793_new	4	11	13	6	10	6	11	5	11	7
TGAGGCGGACATGCGC	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TCTGTCGGATGAACCA	alt_5793_new	69	80	98	71	103	78	99	71	129	75
AGTACCTTAATTGTTG	alt_5793_new	44	76	47	65	83	41	71	35	86	33
GGTAGTCATATCCATA	alt_5793_new	6	10	8	6	11	9	12	7	12	9
TGTCACATAATGCATT	alt_5793_new	9	8	10	11	13	10	16	7	11	5
AAACGATGGCCTCGTT	alt_5793_new	19	29	26	28	34	23	28	20	26	21
GTAAAGGGTGTTAGTA	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TTTCGTCCATCTAACT	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TTCTCTGAGGACGACC	alt_5793_new	0	1	2	0	3	0	0	7	1	2
CGGTACCCCCTGACCA	alt_5793_new	0	0	0	0	0	0	0	0	0	0
ATGTCCACTTGTCAGC	alt_5793_new	0	0	0	0	0	0	0	0	0	0
AGAAGCAATTACCTCA	alt_5793_new	4	5	9	2	6	3	9	2	10	5
TGCAAGTTTGCGGACC	alt_5793_new	0	0	0	0	0	0	0	0	0	0
CCTTTATATTTGTTAT	alt_5793_new	112	165	150	101	134	122	173	128	136	91
GGCACGATACTTTTTC	alt_5793_new	25	38	24	19	26	26	43	28	50	35
TTCTTTTTTTATCGAC	alt_5793_new	40	46	47	35	60	41	49	29	53	45
TTGAAGTTTAGTCCTG	alt_5793_new	51	49	60	39	55	31	63	35	49	36
CGTTGTTCTTGCATCT	alt_5793_new	2	0	2	0	2	1	3	4	4	0
AATTATTCCTCTAGTG	alt_5793_new	21	19	34	22	35	30	31	22	40	24
GATAGGTTTTTGTGTA	alt_5793_new	34	51	26	29	43	29	52	31	70	32
CGTACGCTCCTGCAAG	alt_5793_new	41	125	50	46	157	47	161	43	147	40
TTTTGACCCTTCCATA	alt_5793_new	3	0	2	0	1	1	5	1	2	3
TGTGATTCTATATATG	alt_5793_new	59	65	57	36	60	40	78	49	84	41
GTCTTATGTTTCCGGG	alt_5793_new	57	68	50	45	73	49	59	45	71	40
CGTCAGGTGATTCTGT	alt_5793_new	15	4	2	5	11	6	4	3	13	2
AGTTGCTCTTTATTTG	alt_5793_new	41	63	61	41	66	50	69	39	63	36
GTGATATCTTATGCCT	alt_5793_new	69	75	71	55	68	48	93	60	77	58
TTACATTGCCGCCTGA	alt_5793_new	8	16	11	20	16	9	19	8	14	17
TTATCCAGGTCATGTT	alt_5793_new	97	112	101	81	149	77	143	66	139	88
GAAAGCAAACGATGTA	alt_5793_new	2	8	8	4	7	5	6	3	6	4
TATGTTTTTGTTATTC	alt_5793_new	39	70	66	44	77	49	81	41	73	37
TTACGTCATGGCTCCC	alt_5793_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTTTCGGGAAC	alt_5793_new	42	48	39	33	57	34	39	25	54	22
GTTCATTGCAATTGCA	ref_5977_new	35	77	28	27	57	24	73	28	71	30
CAGATAAACACAAGGC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GTTTCTCCGCCATTAG	ref_5977_new	21	45	26	20	26	21	36	18	31	18
TAAATTACTCTTAAAG	ref_5977_new	2	8	4	6	5	8	8	2	8	2
GAGTCGGGAATTCGTG	ref_5977_new	4	4	7	4	1	3	10	5	7	4
GTCCATTATATGGGCC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TTGTGTTTAGAGACGC	ref_5977_new	13	25	17	14	12	28	21	12	42	17
TAAGAGAGTATGCTAC	ref_5977_new	9	34	8	4	16	4	16	4	30	7
GATTACTCGTATGATT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TATCGTTGCATGACGA	ref_5977_new	22	54	34	30	42	31	54	28	62	23
TAGTAGCCTGTGCCAT	ref_5977_new	2	9	2	6	8	3	10	6	8	6
TTTTAGCTCGTGCGAT	ref_5977_new	10	21	11	9	23	5	25	9	19	11
GCAAGGTACATTTATG	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GTACGCACAACTTATT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
CGCAGTGATTGTGGCG	ref_5977_new	25	70	14	26	48	27	50	22	46	25
TAAATAGCAGCTGGTA	ref_5977_new	10	22	19	10	23	22	24	11	19	16
ACATTGTTACGCACGG	ref_5977_new	23	40	32	20	43	18	45	17	39	15
GGATGTTGTTATGGCT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TGTCTGACTTTTCCGG	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GTGCGCGCTTGCTCTA	ref_5977_new	15	37	28	20	40	16	28	18	39	21
GGACTGATTATGCCGG	ref_5977_new	1	3	3	4	1	2	1	2	4	0
ATCTAGGGTAATATAA	ref_5977_new	57	111	66	67	110	48	118	39	123	49
CATCCCGGGCTTGACC	ref_5977_new	10	15	8	4	13	8	8	11	22	5
ATTATGGCTATACTGG	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GAATTTTGTCTATTTG	ref_5977_new	26	47	27	25	48	17	71	24	62	19
TCTGAGCGCTGGGCAC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
CTTAGGACACTCGGGC	ref_5977_new	19	41	27	15	40	19	36	13	40	22
TGGGGGTAATTTAATA	ref_5977_new	19	25	26	16	20	13	36	18	32	12
TCTCGCAGCTACGCGC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
ACTCTTATTAACAGTC	ref_5977_new	19	31	26	23	47	17	28	19	31	16
TTGCTGTTATTTATGC	ref_5977_new	11	17	12	6	18	14	14	6	11	8
TACTTCATCGGATAGC	ref_5977_new	34	75	49	54	73	22	93	33	93	40
AGTTATTATCCTTATT	ref_5977_new	33	80	31	40	72	30	82	32	67	38
GTCGCGGTAATGTTTT	ref_5977_new	0	0	6	1	5	2	1	1	3	0
AACCTTTACCGTACGT	ref_5977_new	3	1	9	4	11	2	7	3	14	5
TCATGGACGACGGATA	ref_5977_new	0	4	4	3	5	7	4	4	11	5
TCCCCTGTGTCTGATC	ref_5977_new	1	18	3	5	11	2	16	3	12	1
TCAATGCTGTATGGCA	ref_5977_new	4	8	10	9	15	13	16	10	16	8
GAACATAGTTTTAGAT	ref_5977_new	11	22	14	23	15	13	17	12	15	8
TGCTTAAGGGAATGGT	ref_5977_new	5	14	4	5	13	4	7	4	6	6
GGTCATCTCGGAATCT	ref_5977_new	7	17	3	5	12	11	17	7	20	6
GGATTAAACCTGGTTC	ref_5977_new	11	30	11	16	26	9	33	10	37	21
GTTTCGCCTTGCGTCA	ref_5977_new	45	98	57	48	103	48	122	50	112	41
GACTGAGTTACGTGGC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
CTAACAGGGACCGTGT	ref_5977_new	5	4	3	0	9	2	8	1	11	2
TCGCTATTTCTTATGC	ref_5977_new	17	54	29	22	49	20	45	21	63	25
AGTGGGCGGACTTCGC	ref_5977_new	3	5	5	8	5	5	4	2	6	0
CGGCTCGTTTGATTGG	ref_5977_new	23	44	22	17	53	30	48	28	55	25
TATAACGCGGTTTGCA	ref_5977_new	15	29	12	13	27	14	29	16	23	17
TGTTGGCATAGAGCTT	ref_5977_new	8	11	6	6	8	4	13	4	10	7
GGCCGTGGGTAGCGTT	ref_5977_new	4	7	9	2	14	2	15	4	6	5
TGCTGCACGCTGTCAC	alt_5977_new	92	138	92	88	129	61	172	74	144	69
TTTATCCGGATGTGGA	ref_5977_new	4	11	5	5	12	2	5	6	6	1
GGAGGCCGCTGTGTCC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GTCTATTTGGCAGGTA	ref_5977_new	0	0	0	0	0	0	0	0	0	0
CTGTGCGCTGATTAAA	ref_5977_new	0	0	0	0	0	0	0	0	0	0
ACAGCGTTTGGGCTGT	ref_5977_new	12	31	13	8	21	12	29	9	25	11
TGTCTGACGGGTGTCC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TAGATAGTCAAATGCA	ref_5977_new	15	29	18	10	23	11	19	14	26	7
CTTTTCTTTCCGATAA	ref_5977_new	2	2	2	1	2	2	3	3	4	2
AGGCGTTCTCAGCAAT	ref_5977_new	22	19	18	18	33	35	43	13	27	15
GTCGAGATCTTACTTC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GATTTCGTTTAGTTTC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TAGCTCTTAATTTTGA	ref_5977_new	0	0	0	0	0	0	0	0	0	0
AAACCTTTTTTGATCC	ref_5977_new	5	25	7	7	12	13	21	7	14	6
CGGCATGTGCCTATTT	ref_5977_new	36	50	32	27	55	27	53	16	54	17
TGTGGATTCGAACGAG	ref_5977_new	5	6	2	3	11	2	8	5	8	2
GAGCGATGTGTAAGCA	ref_5977_new	23	74	26	21	66	25	81	22	60	20
TGTCCATCCAGATTTC	ref_5977_new	8	13	5	7	14	8	9	7	14	6
GTAGTGTTTGATCTGA	ref_5977_new	0	0	0	0	0	0	0	0	0	0
AGCATAATGAAGAACG	ref_5977_new	9	36	22	12	46	5	29	13	38	12
AATCACTCTTCATACC	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GGTGCTCTTCCTCGTA	ref_5977_new	3	13	19	13	25	14	14	10	21	4
TCCTGGCCCGTCATGG	ref_5977_new	53	141	108	72	150	84	144	51	142	86
TTTAACGAATGTATCG	ref_5977_new	12	14	8	2	11	5	7	3	19	8
TGGCATCCTGTTGTTA	ref_5977_new	8	11	6	8	16	3	25	4	11	6
AGGACGGGCCTATCCC	ref_5977_new	24	42	30	17	54	21	59	30	48	27
TACTCCAAAGCGCGGG	alt_5977_new	32	75	46	38	70	32	51	25	59	34
TTCGGAGAACGACTTT	alt_5977_new	41	66	47	47	72	35	98	32	68	30
AGCTCGGGTCGTTGTA	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TTACGCTGTGCGCCTA	alt_5977_new	66	107	74	73	122	49	120	54	118	71
TGCTAGGTTTCTTGTG	ref_5977_new	5	11	3	6	12	1	10	3	7	7
GTTCACATCCTAGGCC	ref_5977_new	10	27	12	14	25	7	39	12	30	7
CGCTTTTTCATGAGGT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TTCACCGACTTCTCTT	ref_5977_new	22	32	29	21	23	14	24	21	29	13
ATCGCATGCACGGTCA	ref_5977_new	16	19	13	11	12	18	22	6	19	9
GTACACACATGGTGCG	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GTTTAGGAGATACATT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TATTTTATCTCGCTTT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
AGTTGCCCGTTCGAGT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
GGCACTAAGTTTATTA	ref_5977_new	17	77	18	16	84	30	85	24	76	22
GTTAGCGTCGCTTTTC	ref_5977_new	1	4	6	3	7	4	3	2	11	1
CCCAATGCGTCATCAT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TATCAGCCTACACCCA	ref_5977_new	2	11	10	3	15	5	22	3	26	3
ACAGATACAGTTCCCG	ref_5977_new	0	0	0	0	0	0	0	0	0	0
TGCATTTAATTGTGGG	ref_5977_new	30	65	34	34	57	27	63	39	68	35
CATTACGATACCGAAT	ref_5977_new	4	9	10	4	8	4	11	5	4	4
TAGCCTTCCCCACACT	ref_5977_new	1	7	1	2	3	2	3	2	8	0
TCCTATCCTCGACGCT	ref_5977_new	0	0	0	0	0	0	0	0	0	0
AGGGTAAGTCCTTACT	ref_5977_new	5	6	7	9	10	8	9	8	11	4
AGCCGGCGTCACGTAC	ref_5977_new	1	3	4	5	3	0	3	0	0	1
TTGTTAGTCATCACCC	alt_5977_new	69	98	72	53	85	58	78	38	88	63
TTGATGTCGTAACCTA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTACATTAGCTCCGCC	alt_1269_upstream	21	32	15	14	29	21	37	28	37	19
TCACCAGTTCTTATAC	alt_1269_upstream	30	103	38	46	121	33	74	32	93	22
TTTATTTCTAGAAAAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CATCGCTCGGGCCCTC	alt_1269_upstream	21	33	45	28	28	25	43	19	45	28
AGTGAACGTCCATCTC	alt_1269_upstream	24	20	11	15	30	9	26	23	26	12
GGCCACCGTGGTCCTT	alt_1269_upstream	9	10	4	6	5	8	12	6	14	2
TACGGGTATACGTTGA	alt_1269_upstream	10	8	3	3	10	6	11	7	9	4
CGGCTATTTGTTTGAT	alt_1269_upstream	27	37	31	36	36	26	41	29	37	24
CCTTAGTCTATGTAAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTCGACCAGCTTCATG	alt_1269_upstream	15	24	13	26	11	13	18	9	24	8
ACATGTTCCGGCAATG	alt_1269_upstream	3	4	3	0	3	2	6	3	5	5
TGTACGGCGTCATTAC	alt_1269_upstream	35	71	61	49	64	56	77	45	80	61
CGTGTTTAGCTACTCG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGAAGACGAGATC	alt_1269_upstream	41	53	48	56	58	36	50	21	59	36
AATGGCCTCAAGCACT	alt_1269_upstream	14	10	15	7	22	16	14	16	8	13
ACGTCCGGGTGTCCTC	alt_1269_upstream	4	10	7	6	11	7	19	5	18	9
TGTATCCTTTCTACAT	alt_1269_upstream	2	9	6	3	9	4	5	5	4	4
TACGCTGGAGCACGAA	alt_1269_upstream	11	26	27	29	25	24	35	26	39	17
AGACTGGTCGCAAGAT	alt_1269_upstream	1	14	2	0	6	4	7	1	5	7
ACCGGGTACGGGGATG	alt_1269_upstream	16	35	25	13	37	14	29	10	30	8
TCCCACCGCCATCCCA	alt_1269_upstream	30	30	32	21	30	12	39	23	23	17
TATCGCACTTCGGGCT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTGATGTGCGAGA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTGGACTTCTGTA	alt_1269_upstream	37	42	43	27	49	49	47	27	47	22
TGCTCTAGTGCATCAG	alt_1269_upstream	30	43	25	31	40	19	63	20	42	25
TCTTTGCTCCGGCACT	alt_1269_upstream	57	86	75	47	86	56	85	56	103	62
CTGCCTGTCGCCCACG	alt_1269_upstream	40	81	73	42	86	45	105	64	106	54
GATACTCTAGGCCATC	alt_1269_upstream	9	25	19	11	25	12	19	14	23	10
TCGCGCTTACTTCGTT	alt_1269_upstream	31	29	16	33	24	21	41	26	38	22
CGTCGTATGCAGGTGC	alt_1269_upstream	34	44	46	47	58	41	57	27	57	19
AAGCAATGTGCGCAAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCAGACCTGCGAA	alt_1269_upstream	13	23	12	10	22	17	28	14	25	8
TACGTCATTAACCTGC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
ACACGATCGAGAAGTT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCTGATTTCTAGG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCTAACCTTCCTGTAG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CTCATTGCAGAATCCC	alt_1269_upstream	62	89	72	52	80	42	113	50	109	47
GCTAGTCATGTACGGG	alt_1269_upstream	90	132	98	88	150	88	171	83	159	94
AACGGTTCACGGTTTG	alt_1269_upstream	28	46	33	15	30	24	34	17	53	24
AGCTTGTACACGCCGC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAGATCATTTGGG	alt_1269_upstream	22	45	27	28	45	22	39	18	48	17
ACTCGTAGCAAATCAT	alt_1269_upstream	3	2	3	5	0	1	3	2	1	2
GTCCCAGGAACTAGCA	alt_1269_upstream	24	33	14	26	34	14	33	19	28	19
GCGCAGGCCTATATTC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCAAGGTCGATTC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AAGCAGTATTCAACGT	alt_1269_upstream	9	34	18	7	17	18	26	9	32	11
TAAATCTTAAAGCTTA	alt_1269_upstream	33	26	34	21	42	17	25	31	36	18
ATACCGTTGCGACAGA	alt_1269_upstream	23	37	29	11	37	13	49	21	26	21
TTGAACCGCATTTGCT	alt_1269_upstream	84	132	116	93	123	108	128	84	121	74
CTTACGACGCGGTGCA	alt_1269_upstream	30	35	26	17	31	23	28	19	31	22
TGGGCTTAGAAAGGCG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CATGATTTTAGTGTAG	alt_1269_upstream	20	35	25	23	39	21	42	20	42	22
GCAGGTAAAGAATTGC	alt_1269_upstream	104	74	110	86	68	107	81	101	103	69
GTCCTACTTCCGCATC	alt_1269_upstream	46	73	38	48	82	32	80	33	75	26
CGGTTCTGTTCCCAGT	alt_1269_upstream	134	247	170	164	237	132	271	133	239	150
GGCCACAGAACATCCT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTAGCTTGTTTGT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AGCCTGAGAGGCCGCC	ref_1269_upstream	7	20	13	14	11	21	22	6	25	13
CCGGACATTGGGCTCA	alt_1269_upstream	72	152	62	41	188	55	186	55	168	49
GGAGAACCGGCATTAG	alt_1269_upstream	16	35	24	28	35	19	34	32	46	27
GCGTTTTGCTCTTTGG	alt_1269_upstream	13	21	12	18	19	11	10	6	13	11
CTTTGGATCTATATGT	alt_1269_upstream	14	27	15	20	25	16	28	12	31	12
GAACGTTGCGCCAAAC	alt_1269_upstream	18	25	12	19	28	17	25	16	25	13
CTTATCTAGAACAGTT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GTGTCTGCGACTCCCG	alt_1269_upstream	6	29	7	4	22	6	37	6	30	3
CTTATAGCTATTTCTG	alt_1269_upstream	0	0	1	2	0	2	3	0	0	0
TTGCTGGCTAACCGCA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTCTAATCCCTCG	alt_1269_upstream	79	181	139	120	160	92	144	99	180	85
TCCTAAATTTTACTGG	alt_1269_upstream	46	79	44	46	74	36	65	35	95	49
TGAACTCTTGCTTTCT	alt_1269_upstream	26	30	35	30	44	22	37	24	52	23
GCTAGCTTCCGTTCCT	alt_1269_upstream	12	25	10	16	29	11	21	23	19	13
TGTCACTCCTTTTTTG	alt_1269_upstream	8	19	7	9	26	6	22	4	24	9
TTTTTATATGTTCGCA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
ACCTATGGAGCTTTCT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AGTGCACGAGCTTGAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGTGCCGTTAGTG	alt_1269_upstream	5	15	15	10	7	11	18	4	15	9
CTAGCCCTTAGGTGTT	alt_1269_upstream	74	195	114	72	188	63	206	65	217	56
CGTTGTGAGTTCTAGG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCACGGGTATTCTTTT	alt_1269_upstream	55	71	55	56	76	65	83	52	87	56
TCGTGCAGCAAATATT	alt_1269_upstream	5	3	6	12	2	3	4	2	5	1
CTTCTTAGTGAATTAC	alt_1269_upstream	18	27	20	29	48	15	29	27	48	18
TGCGGTGGTTCTCCGA	alt_1269_upstream	11	18	12	10	22	11	25	12	22	16
GGCCAAGGGTTTGCGG	alt_1269_upstream	9	24	13	21	26	16	26	12	21	17
CCCCCTATACGGTTGT	alt_1269_upstream	15	37	15	18	42	19	36	17	45	15
TCAAGGTGGTAAACCA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGGGGGGTATGAC	alt_1269_upstream	24	51	26	15	56	22	55	18	50	13
TGATTTGATCACTAAT	alt_1269_upstream	36	62	45	47	68	43	61	34	54	38
GTGATACTCCGACAAT	alt_1269_upstream	46	101	63	73	94	50	115	59	88	51
CTGATAATCTTTCAAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CAAATAGATAACTGAT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TATTGGGTTTTTATTC	alt_1269_upstream	6	9	12	6	21	7	17	6	20	13
AGAAGGGTAATTTCTA	alt_1269_upstream	76	130	113	80	144	99	145	97	140	88
TCGGTCTGGAGGATAC	alt_1269_upstream	14	71	22	16	63	11	69	13	67	10
TGCGGTCCGCATGGAC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCTATCTGTTCTTTTC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGTGAGGAGCTCGTCA	alt_1269_upstream	19	34	42	27	41	22	45	18	48	29
ATCTTTGTGCATAATA	alt_1269_upstream	37	59	40	33	66	38	56	33	66	30
CGTGTTGTGTTCAGGG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
ACACCTCTAGACGATA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTCAGAGTTAAGT	alt_1269_upstream	20	39	26	21	37	27	35	13	49	29
ACCGAGCTGCACCCTC	alt_1269_upstream	7	13	13	7	9	9	12	9	7	3
CCAGTCCGCCGATGGA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GACATAGGCCGAACAT	alt_1269_upstream	14	8	11	10	11	10	17	11	11	7
TCTTGCAACGTCCCGA	alt_1269_upstream	0	7	3	1	4	1	6	3	9	3
TCGTATTTGTGCTCCT	alt_1269_upstream	71	101	102	63	128	65	121	66	105	62
TGTAATCAGAATTCGA	alt_1269_upstream	5	22	17	13	26	14	23	7	25	8
TACCCCGCCAATAGGG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTATCCTGTTCGGTAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTATCCTAGACGTCGT	alt_1269_upstream	14	32	26	15	26	18	35	16	38	14
GGGTGGTTTAGGCTCA	alt_1269_upstream	45	72	65	54	78	53	99	78	97	49
CTCCGAAGACCCATCA	alt_1269_upstream	9	15	13	8	19	10	21	6	27	3
TATTGCTCGATAACTC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTTGCATAAATCT	alt_1269_upstream	13	31	31	16	43	24	26	24	34	23
TAAGACGCTATGTTGG	alt_1269_upstream	22	33	15	19	32	33	24	16	35	26
ACATTGTTTGGGGGGT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCATCAAACTTTGGAT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAATAGTTATCA	alt_1269_upstream	16	24	25	24	14	14	20	9	14	14
GGGTGTCCGGGTGAAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TACACTCTACACCCGA	alt_1269_upstream	11	33	25	17	35	13	44	16	43	17
ATGTTCGTGAAACCAC	alt_1269_upstream	58	110	79	76	97	53	119	57	104	48
CGACGAGGTCGGTATA	alt_1269_upstream	28	43	33	42	50	32	60	33	40	27
CCTTGCTACGTCGAAC	alt_1269_upstream	18	25	16	17	40	17	35	16	38	12
GGAGCAAGGAACAGCC	alt_1269_upstream	21	40	33	32	35	27	36	22	35	22
TCTGGATTCAGGTCCG	alt_1269_upstream	22	58	30	27	42	25	57	19	70	19
GCTTGTAATCCACTAT	alt_1269_upstream	78	96	99	71	115	47	107	57	118	66
ATTAATAGGACGGTCA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTAACCACGTCG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTGAACGACAGGAGGG	alt_1269_upstream	28	40	25	25	42	23	41	34	39	33
ATTTGCTTTACCGTAT	alt_1269_upstream	21	36	17	17	29	23	32	19	45	14
CCTGCATAACTTAGAG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTCGTTGAACAGG	alt_1269_upstream	9	14	15	11	16	7	16	11	9	10
CTACGCCATAAACTTC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TAAAAGCACCATTCCC	alt_1269_upstream	38	70	60	43	80	36	63	29	73	40
GTAGAGTATCTGTCTC	alt_1269_upstream	19	27	31	22	26	20	27	24	40	12
CTCGCACCTTTAAAGG	alt_1269_upstream	26	50	38	26	85	26	68	21	63	27
CAAGTTGCTACTGCAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GATGCGGTGCCATTTT	alt_1269_upstream	5	16	19	16	15	7	10	9	16	4
CCAAAACTAAGTTGTC	alt_1269_upstream	11	18	14	10	26	13	20	11	32	4
TTTTGCGTCCGAGGAG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CTAGATTCCCGCTTTC	alt_1269_upstream	18	46	39	28	43	19	59	28	58	25
TAGAGAATTAGTTGTG	alt_1269_upstream	6	19	4	5	12	5	11	7	7	8
GGGTTGATGATTTGGT	alt_1269_upstream	20	45	44	21	42	28	42	40	43	22
CCCGAGTTCCGCTTCA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCGAATTTCGAGATGG	alt_1269_upstream	18	31	10	21	32	17	30	14	38	17
GTGAAACAACTAGCGA	alt_1269_upstream	58	97	58	61	83	48	107	60	106	49
AATAGAGATTAAAAGT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGTTAATAGTTCC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CGTACCGTTGGGGATA	alt_1269_upstream	25	21	24	17	24	16	40	17	25	15
CATCCCGTAATGCGAG	alt_1269_upstream	57	67	45	32	69	25	68	44	81	41
TATTATGATCTAGTTA	alt_1269_upstream	2	1	6	1	4	2	3	5	3	3
GGTCCACTCATAGTGC	alt_1269_upstream	6	36	8	12	37	10	21	13	47	9
TCAGGCGTCTTCGGCG	alt_1269_upstream	1	1	3	0	0	1	2	1	0	3
GCCAAACTGATCGCAA	alt_1269_upstream	0	3	2	3	8	2	8	0	3	0
ATCCATCGTATAACTT	alt_1269_upstream	16	20	17	17	20	16	23	12	10	15
GTCTAAGCTTGAGATA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCATGCCTGGTTC	alt_1269_upstream	18	32	15	19	43	19	32	16	27	17
CACGGCATGGGTTGTG	alt_1269_upstream	18	21	12	8	23	15	18	9	17	10
GAAGCTATTCTGTCTT	alt_1269_upstream	20	19	27	20	31	11	26	17	31	14
GAAACTCTAGGCCATC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCGTAGGTCTATTTCG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGTCATGGTTGCT	alt_1269_upstream	121	189	138	133	185	112	184	105	232	100
CCTGCTCCGCTCCAAT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TGAGACGGATTCCTGT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGCTGGTTCGAGA	alt_1269_upstream	1	4	4	4	7	4	7	5	9	2
ACGAGTTTCACCAGTC	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCTAAAAGTATGCGTA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTTTATACCAGCT	alt_1269_upstream	3	0	0	1	5	0	0	2	1	1
GCATATGGATTCTCGT	alt_1269_upstream	34	52	36	28	39	41	42	36	50	25
GGTAATGCGATGGCAA	alt_1269_upstream	15	26	17	22	21	15	38	16	30	14
GACAGCGAGACTGGGC	alt_1269_upstream	2	6	5	5	14	7	14	4	12	10
ATTCCCCCCATCCACT	alt_1269_upstream	1	3	3	2	2	2	5	1	1	2
GGAGAATGACTGTCAT	alt_1269_upstream	56	75	68	38	69	45	68	55	100	37
GTTCACAGCCATAACC	alt_1269_upstream	15	13	9	11	16	5	13	3	13	7
TCCCTTCACGAGAACC	alt_1269_upstream	20	25	26	15	35	13	42	17	31	18
CCCAACTATATATCAA	alt_1269_upstream	11	15	16	15	8	12	13	3	12	11
CACGTACTGTGTGGGA	alt_1269_upstream	37	49	49	23	52	35	50	29	59	29
CAGGCGTAATCGTTGA	alt_1269_upstream	7	4	2	0	1	0	4	5	2	2
CCATAGGAATATTCCG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCATAGCAGAATATAT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AGGTACCAATTTATAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTAACAGCGGCTGTCT	alt_1269_upstream	77	80	76	86	132	69	106	62	93	60
TTGGTGACCCTTCACG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCAAATCGTCATT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGCAACACCCCTT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
ATGAACCGCTCAACAC	alt_1269_upstream	27	61	42	32	63	38	48	24	58	26
TTAGCATCAAGCATGA	alt_1269_upstream	129	198	147	114	165	102	197	133	200	118
ACACTGTAGAAATTCG	alt_1269_upstream	12	16	2	7	9	3	11	6	13	5
TCGGTCCAGACCAATA	alt_1269_upstream	1	0	2	2	1	0	1	0	4	4
CTCTACAGGCCGTACA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCGTAACTTACAATTA	alt_1269_upstream	16	48	23	30	30	21	27	16	26	17
GTCTCACTAACGAAGG	alt_1269_upstream	7	22	22	23	28	13	19	16	27	10
CATGCAGACGCCGACA	alt_1269_upstream	51	80	62	42	81	46	79	43	74	64
CATCAGCTCGTGCGTG	alt_1269_upstream	24	47	24	28	56	25	55	37	57	22
CCTATGGGTGCTTACT	alt_1269_upstream	94	140	90	74	129	81	154	65	159	83
AGATTTGCCGATGGGT	alt_1269_upstream	25	51	49	31	65	39	58	35	63	33
TACTACCGGGTATCCG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTAGCTATGTCAA	alt_1269_upstream	8	14	12	12	9	6	15	6	9	13
GGGTATGAGAGGACCG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AATATAGTTGATTGAA	alt_1269_upstream	9	10	15	14	16	13	26	12	28	15
CACCTATACCGAATGA	alt_1269_upstream	13	23	18	19	15	17	22	12	30	15
CTTGAGGACTCATTTC	alt_1269_upstream	35	70	45	39	57	38	69	30	66	29
ACATCTCTGTTGGCTT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCCCTGTTAGTACTTA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TACCCGGGCACAAGTT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TGGAAGTAAGCGTATG	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTAACCACGTCG	alt_1269_upstream	7	26	15	21	20	12	22	18	25	14
CTCGTTATATTGTTTT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
AGCAGTGTTACCAGGC	alt_1269_upstream	1	4	5	2	6	5	8	8	9	3
GCGTTCCTCATTCTAA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTAATGTACTTCGAAC	alt_1269_upstream	15	12	14	11	24	16	22	12	27	10
ATGCTTTATTGATGTC	alt_1269_upstream	5	7	3	2	5	2	4	1	5	3
TTTTAACCGTCACCCG	alt_1269_upstream	97	169	120	99	194	99	167	99	172	91
TTCCTGGTTCGACTTG	alt_1269_upstream	5	10	5	10	11	3	13	3	7	8
GTCCGTTAAGAGTGCG	alt_1269_upstream	23	42	30	26	42	22	32	27	45	28
CAATTCGCGCTGATTA	alt_1269_upstream	74	93	72	58	98	58	90	61	108	69
TATGTTTACTAACTTA	alt_1269_upstream	38	46	28	29	33	30	37	34	52	31
CATCAGCCCTCAGTAC	alt_1269_upstream	19	57	27	18	89	13	67	10	87	14
GTGACTGTGAATCGCA	alt_1269_upstream	12	28	18	10	24	13	14	9	30	14
ATACATCTTGATTTAT	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGAGTGTGGTACA	alt_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCTGAGGCCTAGGCAG	alt_1269_upstream	55	79	86	71	95	57	95	54	100	48
GCGCCATTAGACATTC	alt_5790_new	5	17	6	7	12	3	10	5	13	3
ATGTAACTTCGTGTTC	alt_5790_new	29	54	21	28	52	29	55	21	65	19
CCATTGGACCGTATGG	alt_5790_new	51	88	57	51	109	51	98	54	106	55
AACTAACTTGCTTGCA	alt_5790_new	136	204	196	125	223	115	231	142	217	135
CAATCGTGCCCTCACC	alt_5790_new	54	89	64	54	72	33	92	44	67	52
AATAGTTGTATTGCCC	alt_5790_new	21	29	21	19	33	12	39	16	38	15
GCCCCAACGTGTGTGT	alt_5790_new	22	72	41	47	66	33	75	26	74	21
CAACAGGTCCGCCTCG	alt_5790_new	0	0	0	0	0	0	0	0	0	0
GGGGAGTGCGGGTCCC	alt_5790_new	9	17	9	11	18	9	14	8	17	5
CGACATTTCTGGTCCT	ref_5790_new	16	26	25	20	34	14	32	23	41	27
AACCTCTCGTGGTAGA	alt_5790_new	27	36	25	21	35	29	42	16	40	20
AATTAACAGTTGACAC	alt_5790_new	0	0	0	0	0	0	0	0	0	0
TCAGTTCATCAATTTT	alt_5790_new	0	0	0	0	0	0	0	0	0	0
CGCTAGGTTCAGCGAA	alt_5790_new	0	9	7	4	2	6	14	2	10	2
GGCCTATCGATTTGGA	alt_5790_new	0	0	0	0	0	0	0	0	0	0
AATTTTCGGGTTTAAG	alt_5790_new	0	0	0	0	0	0	0	0	0	0
ACCTCGCTCCTCCCAC	alt_5790_new	4	19	5	3	12	9	13	3	26	5
ACGTTCTCGTACACTG	alt_5790_new	13	54	20	24	50	14	67	12	55	9
CTGACCGCTGACTTGT	alt_5790_new	11	25	24	21	19	14	20	12	47	18
GGCTCTGATTGAAAAT	alt_5790_new	14	18	17	14	24	11	25	16	19	15
CTTTATGGCAGATCGT	alt_5790_new	60	114	86	67	102	61	119	59	105	55
CCGAAATAACTTTGCC	alt_5790_new	0	0	0	0	0	0	0	0	0	0
TATCACCTGCTGAGAG	alt_5790_new	0	1	3	1	2	1	2	2	0	0
CCGCATTTTGCCGATT	alt_5790_new	31	67	35	29	60	31	71	19	82	19
CCTTGCCTATCCTTTC	alt_5790_new	9	20	16	7	23	16	17	8	27	11
CCCCTGACTTTCGATG	alt_5790_new	0	0	0	0	0	0	0	0	0	0
CACGTTGATTGTGTAG	alt_5790_new	45	65	44	36	87	43	75	37	107	28
ATTATTATCTTATGTC	alt_5790_new	17	17	18	16	16	9	9	10	25	10
AAGCCGACAGATCATA	alt_5790_new	124	183	150	117	186	111	202	106	193	119
ACAGTGGCTACGCTTC	alt_5790_new	0	5	6	0	7	1	4	2	2	3
GGCTGTACCTTTATGA	alt_5790_new	29	36	28	15	31	14	29	22	34	12
GCTGCATCTTACGTTC	alt_5790_new	14	17	25	31	31	16	16	21	22	11
CCTTGAAGCCTCTAAG	ref_5790_new	30	65	27	25	72	20	50	16	52	25
AGAGGGTGTTGGCTTG	alt_5790_new	0	0	0	0	0	0	0	0	0	0
TGAATAACCATTCTGC	alt_5790_new	38	69	51	44	64	39	95	38	73	46
CGGTAGGCGTCGCCAC	alt_5790_new	0	0	0	0	0	0	0	0	0	0
GGTTCCAAGCTTTATT	alt_5790_new	9	20	8	13	12	8	17	10	18	4
TAACGTTTCGCGAGGA	alt_5790_new	0	6	2	3	7	2	4	0	3	1
AACCTATCACGACTGC	alt_5790_new	0	0	0	0	0	0	0	0	0	0
CCTTTGCATTTCAGTC	alt_5790_new	0	0	0	0	0	0	0	0	0	0
CGATTTCAGTCTCTAA	alt_5790_new	0	0	0	0	0	0	0	0	0	0
AAGGCTTCAGCTCGTT	alt_5790_new	0	0	0	0	0	0	0	0	0	0
CGCAAATCATTCACTC	alt_5790_new	35	64	48	38	75	23	62	37	53	34
GATGCTAGTCCGTGGT	alt_5790_new	10	22	19	18	24	12	16	9	27	17
TGACGGGCTTACTGGC	alt_5790_new	132	251	156	138	299	124	261	133	247	113
CACAACTGCCGCACCA	alt_5790_new	2	1	3	0	5	2	7	2	7	2
GAGCGTGTACTGGCAA	alt_5790_new	1	2	4	0	3	1	4	0	1	1
TAACGCTCAAAACCGA	alt_5790_new	4	10	1	2	9	2	3	2	1	0
GTTTAGATTCGCATTA	alt_5790_new	1	4	1	2	4	2	4	2	4	4
TAAGCATTTTAAATAT	alt_5790_new	0	0	0	0	0	0	0	0	0	0
GGACAGTTGCTCTCAG	ref_5790_new	179	357	217	187	380	186	362	166	375	172
GTGCCGTTGAGTTTAT	alt_5790_new	0	0	0	0	0	0	0	0	0	0
TCTACGTTTTTGCGCC	alt_5790_new	0	0	0	0	0	0	0	0	0	0
GGTCGGTAGATTCACA	alt_5790_new	0	0	0	0	0	0	0	0	0	0
GTATCTTATCCCGTGG	alt_5790_new	3	3	13	4	11	4	9	5	7	5
CTTCTATCTATACGGT	alt_5790_new	0	0	0	0	0	0	0	0	0	0
GAAGTCCTGTGACTAC	alt_5790_new	26	71	26	30	65	32	46	31	76	24
TAATCTATAGGTCTTT	alt_5790_new	9	23	28	19	17	19	15	13	27	11
TGTAACGATTATTCTC	alt_5790_new	0	0	0	0	0	0	0	0	0	0
CTCTTTTTTGGTAATG	alt_5790_new	122	173	138	118	175	113	182	81	231	72
AACCTACGAGCTCCCC	alt_5790_new	47	75	46	45	64	34	62	51	60	37
ACAACAGATCATTTTC	alt_5790_new	6	9	10	3	7	6	12	1	15	9
CGTTCATTTAACCATG	alt_5790_new	20	30	17	14	27	21	19	10	35	12
TACCCCTCCACCCCTC	alt_5790_new	52	77	68	52	74	47	70	55	107	52
ACGTCCTGTAGGGACA	ref_5790_new	21	25	13	18	41	20	33	8	30	17
TGTTGCTTCTCTAGAA	alt_5790_new	0	0	0	0	0	0	0	0	0	0
GTTGGTCTTCCGGATC	alt_3923_missing	2	0	2	2	1	3	0	1	4	2
AATCATGTAGTTCTAA	alt_3923_missing	177	139	225	187	165	161	160	171	132	164
CGGGGGACCTTCGCCG	alt_3923_missing	6	1	10	6	9	11	6	13	5	6
CTCCCCAGTGTGAGAA	ref_3923_missing	69	107	71	75	103	76	94	92	103	62
AATGGGTCTTCCGTGC	alt_3923_missing	0	0	0	0	0	0	0	0	0	0
TCTGTACGCAAGTTCA	alt_3923_missing	110	76	147	126	92	102	99	104	95	98
CGTAGGTAGGTGCTAT	alt_3923_missing	40	30	51	45	32	27	37	41	38	33
GTGCTCGTGATTTAAA	alt_3923_missing	81	94	83	81	81	75	104	82	96	61
TCATGATGTCAACAAA	ref_3923_missing	36	27	47	23	21	24	16	31	21	28
ATCGGAGTCCGCACTT	alt_3923_missing	0	0	0	0	0	0	0	0	0	0
ATGCGTTGCAGGATGT	alt_3923_missing	14	10	12	10	14	15	8	14	14	14
AGGAGACCGGTACTAG	alt_3923_missing	19	23	33	24	28	27	14	29	21	23
ACCTTTTGAATTGCCG	alt_3923_missing	7	4	11	7	4	13	7	8	2	3
AGTCATCAGCACTGTC	alt_3923_missing	26	11	24	25	15	21	17	27	29	26
TACGTAGGACCAGTGT	ref_3968_upstream	6	7	5	7	12	0	6	5	13	3
ACCCTTTCGGTGTCTT	alt_3968_upstream	27	13	20	18	20	26	25	16	17	20
TGTGGTTTTACGTAGG	alt_3968_upstream	93	66	83	61	44	67	64	62	67	49
AGAGGTGCACATCGCC	alt_3968_upstream	6	26	21	14	38	17	32	17	23	5
TTTCTGAGGCTGTAAC	alt_3968_upstream	2	1	7	3	6	2	5	3	3	0
TTTTGCCCAGGGTTTA	alt_3968_upstream	80	83	103	103	71	113	84	87	89	90
GGGAAAACATTGGGTC	alt_3968_upstream	22	35	35	23	27	25	27	25	33	28
GGATTTCCCAGCATGC	alt_3968_upstream	48	28	42	63	27	44	33	49	33	34
CCCTTATGCGATAACT	alt_3968_upstream	45	36	42	42	41	42	46	45	41	34
CGTTAAGGGAACATTT	alt_3968_upstream	23	21	42	21	25	28	23	16	26	21
GCAATCGGGCCTGCTC	alt_3968_upstream	36	40	26	31	21	30	24	26	31	25
GCACTGGTACGTGCAG	alt_3968_upstream	35	42	46	39	31	36	50	38	39	34
GGTTTCTTTATATTTG	alt_3968_upstream	12	16	14	12	13	8	10	11	15	5
ATCATAGGTTCTTAGT	alt_3968_upstream	84	91	121	109	97	84	104	96	101	73
ACACGCGAGTCGAGCG	alt_3968_upstream	139	117	148	146	128	116	86	150	114	123
TATGAGGCTATATCCC	alt_3968_upstream	41	53	76	48	52	34	43	49	58	51
ACTAATGTTCCCCAGA	alt_3968_upstream	9	8	10	1	7	3	5	6	10	3
TTCGCCAGGTGATTTC	alt_3968_upstream	45	39	76	46	44	33	44	34	44	44
TTTCTCACTCCGTTTT	alt_3968_upstream	81	76	92	92	92	87	88	93	71	77
GCAGCATGTTTCATTC	alt_3968_upstream	4	1	8	8	4	6	4	7	3	2
TATGTATGTGGGGTCC	alt_3968_upstream	8	7	7	4	7	10	9	12	11	11
ACTCAACTCGCACCAC	alt_3968_upstream	6	3	9	7	13	12	9	7	19	11
ACTACACTTTAGATCT	alt_3968_upstream	20	17	25	17	24	11	18	13	19	18
GCTGATAGAAGTTTGC	alt_3968_upstream	38	49	54	53	37	52	36	50	51	43
TGTGGAATTTCCTTCA	alt_3968_upstream	175	158	217	200	150	183	185	180	178	166
TTCATGGACCCATCTG	alt_3968_upstream	42	37	65	74	51	60	57	44	41	47
GCGTGGTTGCTGTGGT	alt_3968_upstream	105	65	128	92	86	101	72	69	102	63
CAATTTCTTCTGCGGG	alt_3968_upstream	16	7	20	10	8	10	7	9	6	9
CGAATCGCATCCACGC	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
ATTATCCTCCTCAGGC	alt_3968_upstream	40	32	79	44	45	41	42	43	45	44
AGTAGCATTTATGGCG	alt_3968_upstream	295	231	336	324	242	275	244	263	236	244
TTCACTAGGGTATGCT	alt_3968_upstream	0	3	5	5	5	1	2	3	5	1
TCTAAGTCAGACGAGC	alt_3968_upstream	19	20	20	31	20	19	16	26	14	23
TACAGGCTTCGAGCGC	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTGTTCGCTTAGC	alt_3968_upstream	37	20	48	35	43	20	28	32	39	35
TACTATCTGTGCTCTT	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTAATTGCGGGGA	alt_3968_upstream	8	12	15	10	10	7	11	10	9	8
CAGTTCTCCAGTCTTT	alt_3968_upstream	3	7	10	12	4	4	2	5	5	4
ATCGCTCCATGATTCA	alt_3968_upstream	55	47	51	52	46	58	58	47	48	33
GTAGTGTATTGGCTTC	alt_3968_upstream	25	23	26	26	19	20	24	21	42	25
GCTTAGTGCAGTAGAG	alt_3968_upstream	16	29	19	31	15	22	24	16	15	16
TTCTTCTCTGAGGTTT	alt_3968_upstream	19	21	31	31	24	17	23	22	21	25
TTGGGCGCTCAAGATT	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTCTCCGACGGTG	alt_3968_upstream	35	40	60	49	39	43	46	48	33	37
CCTCGCTTCTGTCGAC	alt_3968_upstream	17	10	15	14	17	13	16	12	13	16
GCTGTAACGCCGGCCA	alt_3968_upstream	6	8	13	8	7	7	8	7	1	7
TATACCAGCTTATTTT	alt_3968_upstream	5	3	3	6	3	3	3	9	1	1
TATTCAAGTTTATTGT	alt_3968_upstream	80	82	105	83	68	86	69	53	87	69
TCACTTGTGGGATGTG	alt_3968_upstream	3	6	6	9	7	6	10	2	7	1
TTGTGAATAGCAGGTC	alt_3968_upstream	5	12	5	10	7	7	5	4	5	3
AATGGAAGTCGACCCT	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
TGCTATCCCGACGTAC	alt_3968_upstream	42	45	34	29	36	32	38	39	42	21
CTGTACCGGTGTAATA	alt_3968_upstream	107	108	136	119	95	123	107	97	113	101
ACCTCCAGTGGGCCTA	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTCCCCGTTTTCT	alt_3968_upstream	1	9	8	4	10	5	7	3	3	1
TTTCTCACACTGTGTG	alt_3968_upstream	25	23	23	9	17	26	20	21	23	17
GGTGTGGGATCGAAAA	alt_3968_upstream	74	81	87	81	65	56	80	50	53	64
CCAGAACGCTTCGTAG	alt_3968_upstream	2	4	4	5	1	3	2	5	3	5
TATAGGCTGCGCTTCT	alt_3968_upstream	49	52	67	41	52	45	45	68	55	47
TCGATTTTTAGGGCTA	alt_3968_upstream	37	41	58	39	42	50	33	56	46	50
AGGACGGCTAAGAATC	alt_3968_upstream	59	36	55	55	29	45	41	55	36	68
CTTCAAGGAAAGTTTG	alt_3968_upstream	25	20	33	20	21	15	21	23	38	17
GGCCACAATGGCTCCC	alt_3968_upstream	13	6	30	21	17	21	15	17	9	12
GAGCCTATGCTTTAAT	alt_3968_upstream	5	2	4	6	8	3	9	4	0	2
TTAACGGTTATAATTT	alt_3968_upstream	71	37	80	36	53	67	53	50	52	40
GGCGTCTAAGGATCGC	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTCGATGTACCTG	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
TCTGAGTTTGTTCCAC	alt_3968_upstream	24	39	35	30	24	20	42	25	39	17
GATTCTGCCTACGGTG	alt_3968_upstream	3	3	5	6	4	1	1	3	6	5
GCCCCCGGGCTCGCGG	alt_3968_upstream	18	9	10	18	13	12	13	11	21	20
GCTATCGATGGAATGT	alt_3968_upstream	83	45	81	65	68	64	68	74	65	74
AAGTGATGCGTGTCAA	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
GCATCGATTACACCTA	alt_3968_upstream	51	55	57	37	52	40	32	55	47	40
GGGGCGCTAAAGTGGG	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGTAACTCTTAAA	alt_3968_upstream	5	9	5	6	7	2	12	2	8	1
ATTGCAATTGTACCCT	alt_3968_upstream	11	9	9	5	9	6	13	11	7	10
GATGTAGATACCGTAT	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTGCTGAATTGGA	alt_3968_upstream	62	48	66	63	50	47	54	40	40	49
TACAAAATCTGTGAGA	alt_3968_upstream	81	65	87	115	76	85	66	88	73	69
CTCGATCACTCGGCAC	alt_3968_upstream	5	8	14	7	6	2	4	8	7	7
GGTGTCCTACTATTAC	alt_3968_upstream	3	5	4	1	0	2	2	6	4	3
TTATTCTAGTTTAAGC	alt_3968_upstream	132	101	143	95	129	118	125	119	127	106
GCACCGATCGTTTCTT	alt_3968_upstream	24	35	25	25	40	19	25	21	34	12
GGTCTTATAATTGTAT	alt_3968_upstream	6	9	19	4	4	9	11	11	7	7
CACAGGTGCCGAGTGA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TTAATGGCTAACGGTA	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
GGGTAGTTGCACTTGT	alt_3968_upstream	108	57	109	108	81	91	112	107	89	77
AGTGGAATCGTTTATT	alt_3968_upstream	44	34	42	42	36	38	27	39	34	45
ATGATGATGCTAACAC	alt_3968_upstream	13	6	19	13	6	6	19	11	9	3
TGGTCGGTTGGTCATT	alt_3968_upstream	0	0	0	0	0	0	0	0	0	0
CTATGATTGGGACCAA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CGGGTTTACTCGTGGG	ref_5740_new	23	22	7	19	17	7	27	12	22	11
ACGAATGATTCTCGCT	ref_5740_new	53	41	55	30	58	40	56	30	54	22
CGTGGTTTCACTCCGC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GGCCTCAGCTAGTGGA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CGTAGTGTTAACAAGT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GACAACCGGGGCAATC	ref_5740_new	6	6	5	5	7	3	8	5	11	4
CCTTCGTTAATAGGTT	ref_5740_new	64	93	73	78	102	56	103	50	100	42
CTTCAGTATCGCAAGC	ref_5740_new	8	18	10	11	22	19	25	19	16	4
GAGGTACTTGTACTGA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CGCTCAGCATTCTCTG	ref_5740_new	17	45	34	22	52	19	54	33	49	20
GATTTCCAGTGCATAT	ref_5740_new	24	49	43	44	55	35	59	29	78	21
ATTAACGTTTCTTCTT	ref_5740_new	20	24	22	15	10	19	20	16	23	14
TTGTTGTGGACCGCTC	ref_5740_new	11	19	12	8	16	8	15	14	22	12
GTTGCTTTGGGTACTA	ref_5740_new	2	5	0	4	3	4	4	0	7	1
TGTGCTTCTCACTTAC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
ACATCCCTAGCAGAGC	ref_5740_new	0	5	0	0	0	0	0	0	1	1
GGGTTCCTCGAGCAGA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GGTCATTGCTTGCCAG	ref_5740_new	19	25	27	23	36	18	36	28	33	21
TCCACTGTTGCTTTCA	ref_5740_new	17	16	8	10	25	11	20	13	19	15
TTGAATAGGTAATGTA	ref_5740_new	19	23	11	20	28	13	25	13	45	9
ATACAATAAAACGATG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GCTTTATCGAGGCAAT	ref_5740_new	23	36	22	13	16	25	24	20	31	6
CGTTTATTCAGTAATT	ref_5740_new	33	64	38	32	59	38	71	33	60	28
GGGCGTGCCCATCTAA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GATCGGGTATTGGGGT	ref_5740_new	0	1	2	0	2	1	0	1	3	2
AGAATACAATTTAAAG	ref_5740_new	9	7	11	12	7	4	12	10	13	11
GTAGCACGTCCGGTGT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CGTCATACTTCGAACT	ref_5740_new	4	14	5	9	7	5	7	5	4	11
CTAGATTCTCGGCATT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AATTTCATCTACACAT	ref_5740_new	0	1	0	0	0	0	2	0	0	2
TCTTCTCCCTTATCGT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
ACGGGCATGTCTTCTT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TGACGAAAGTTCGTTA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CATGCTTAACCGTCGG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TGAGCAATGTTCATAA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CTTCTACAGAGGACCA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TTTTACTCAATGCCTA	ref_5740_new	79	122	76	80	110	65	125	65	123	63
TTTTTGACTAAATAGA	ref_5740_new	11	7	10	4	10	4	8	7	9	7
TCAAGTTAGATGTCGT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AGTGGTTATAACTATG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TTTAACATATAGTACA	alt_5740_new	19	24	20	21	38	20	37	30	38	15
ATGTGTTCTCCATCTC	ref_5740_new	2	10	5	6	6	4	8	4	4	6
ATACAATTAAACGATG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GTTATACAGCACGTGT	ref_5740_new	8	25	22	17	21	9	30	13	30	12
GCCGTAGTTCGTTACT	ref_5740_new	12	23	11	11	21	7	25	8	17	6
AGAGACGTCTGGGCCG	ref_5740_new	30	37	15	17	21	8	28	22	52	11
CCGAGGGCGTTTCCAT	ref_5740_new	26	21	17	13	25	16	26	10	26	12
CGTGCCAGACTCATGG	ref_5740_new	5	4	3	1	5	2	5	3	5	2
TGTTTAGTGTAATAGT	ref_5740_new	19	44	22	14	35	14	29	16	23	15
TCCTGGCTCTCGCATA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GCTAGGGCCATCAACC	ref_5740_new	7	9	6	3	9	3	7	8	13	3
GGGTTATTCATCCCGT	ref_5740_new	2	1	0	5	4	1	7	0	5	3
AGGCAGTAAAGCCCTT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AAGAGGCAGGCTAGCA	ref_5740_new	11	9	7	12	5	6	3	1	14	1
CGTCTATATGCTCAGA	ref_5740_new	5	23	11	18	18	14	13	6	20	11
TGAATATTTTGGCTCT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AGTGCCAATTTCTTGC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CTTATTGATCATTGTA	ref_5740_new	1	4	1	0	4	1	8	2	9	8
ATCCTTCACGTTATAC	ref_5740_new	39	52	29	25	73	30	47	34	39	23
GAAAGAGCACTGTGGC	ref_5740_new	10	20	16	15	13	9	20	17	14	10
CATGTAGCTAGTTGGT	ref_5740_new	24	35	19	12	24	24	41	18	37	20
TTTCTATCTGTTAGTT	ref_5740_new	28	37	32	36	45	28	58	30	37	28
CGCCATTCATAATCCG	ref_5740_new	1	1	2	0	5	2	4	4	2	2
TACGTGACCTTTCCTA	ref_5740_new	9	11	9	11	14	8	11	6	10	5
TACGTTTTGAAGCGGT	ref_5740_new	25	37	42	28	44	34	56	29	45	33
TTCGATTGTTCATAAA	ref_5740_new	7	6	10	4	17	5	5	5	14	7
CATCCACGTGATCAAA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
ATGGATGGTTTGTTGA	ref_5740_new	6	7	12	8	10	8	8	11	16	10
GGCCGTCTTGAGGTTT	ref_5740_new	2	6	2	3	1	1	6	2	5	0
TAGGGTCTAGGCGTCT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AAAGCGTGAAACAGCG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GGAACACGAAGTCGAC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CTACCGTTTCCAAGAG	ref_5740_new	7	76	8	8	54	9	58	10	59	13
TTTGGCTCGATCGTTG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TAGTAGGGGATATGAG	ref_5740_new	34	42	37	27	40	24	47	22	37	18
CGGGCGCCTGAATTGG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GTCATTTTGTTTCTTC	ref_5740_new	0	0	1	0	3	4	0	0	1	0
ATCAGAAATTGCACGG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AATACTTCTTCTTCAC	ref_5740_new	82	110	96	89	109	52	118	62	113	54
AATCTGGATTGAGACA	ref_5740_new	34	66	31	29	72	23	46	40	75	30
CCGAGCTCTTGTTACT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GTCCGACTCTGTTATC	ref_5740_new	35	60	53	33	58	51	76	29	88	37
GGTCTTTGTCCGACCG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AAAGGATTACATAGCC	ref_5740_new	25	20	28	14	22	11	29	17	29	16
TGGTATAGTTTTTATC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CCTGCAGTACACTTCT	ref_5740_new	5	56	17	12	48	10	53	9	54	13
CGTTTTCTTACTTTCT	ref_5740_new	60	63	57	45	53	56	55	57	44	52
AGCCCGCTCAACTTTT	ref_5740_new	32	52	41	40	59	34	63	29	67	32
TAAATTGCCAGTGCAG	ref_5740_new	15	26	15	12	14	9	19	5	23	14
CGCTGTCTTTCAGTTT	ref_5740_new	6	8	8	6	11	3	21	6	12	2
CATGTAAGATTTAGCT	ref_5740_new	47	61	65	59	67	36	73	33	71	39
CACATCGGTTGTCTAG	ref_5740_new	21	39	25	32	30	18	55	22	37	25
GCCACCCACAGCAAAT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CTCTGATCCAATTGCT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TTTTTTCTATTATAAC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GATGGTTCCGCGCCCC	ref_5740_new	0	2	0	0	0	0	3	0	0	0
CTAATGAATAACTGAA	ref_5740_new	1	3	4	0	3	0	10	0	3	1
CTGGAGTGTCCCAGTT	ref_5740_new	0	0	0	0	0	0	0	0	0	0
AGTTGACAAGTCATTC	ref_5740_new	12	21	26	20	43	24	48	24	42	19
TCTATGTTATCGATTC	ref_5740_new	2	1	2	1	0	4	0	1	3	3
CCAAGTATTGGCCTGC	ref_5740_new	27	73	53	46	79	37	56	32	69	44
CAAATTAATGACTCCA	ref_5740_new	57	89	73	72	83	43	88	59	85	47
GGGGACTCATGGTAAG	ref_5740_new	17	28	6	15	19	12	18	13	22	9
TAGGTCGTCAACTCCG	ref_5740_new	61	80	48	49	86	50	92	40	84	39
TTAGTCCGCGCTGCCA	ref_5740_new	84	119	105	96	113	82	136	75	113	63
CTGCATAATTAAACTC	ref_5740_new	17	12	9	9	6	8	18	9	10	5
AGACACAGCCTGAAAA	ref_5740_new	7	15	8	15	19	19	12	8	21	11
AGGTAACGCAGTTCGG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TTCCTCCGTTTAGCTG	ref_5740_new	54	53	66	57	76	70	87	44	94	31
AGCGGTGCTCTTTAAC	ref_5740_new	25	33	26	14	29	24	34	31	35	22
CATTCACTGGTGTTGG	ref_5740_new	10	22	10	15	21	9	20	6	10	14
GTCCAAGTGACTAAAC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
GATCTTGTGACAACGC	ref_5740_new	42	59	57	33	57	40	54	27	50	35
GATAGATTGTGCTTTC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TAGTCCGTTTTGGTTC	ref_5740_new	0	0	0	0	0	0	0	0	0	0
CTCTCCGAATCCTGGA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TGCTACAACCGTTGCG	ref_5740_new	23	53	29	34	54	32	52	17	72	33
TTGCGCTGTCGGTGGA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TTTAAGTAACGTATCT	ref_5740_new	19	13	13	13	13	9	16	13	17	11
GATGTTACAGTTTATC	ref_5740_new	8	10	7	7	13	8	14	10	12	4
TTATTGCTAATGCCCA	ref_5740_new	20	42	37	40	41	24	34	26	33	14
CGGCATAATTGTTTGC	ref_5740_new	48	84	60	55	73	54	72	42	82	42
ATATGTCGTGCTCGCT	ref_5740_new	9	21	18	20	18	17	27	12	32	17
TTATCGGCATTCTGAT	ref_5740_new	7	21	26	15	10	15	14	18	12	9
CTCAAGAGTTGTTGAC	ref_5740_new	5	13	9	4	16	6	19	5	12	6
TAACCACATCATTGAC	ref_5740_new	10	16	14	7	12	15	13	3	28	5
GCTTTGGAATGGTTTA	ref_5740_new	0	0	0	0	0	0	0	0	0	0
TGCACTAAGTCGCTGC	ref_5740_new	16	19	21	20	23	12	28	5	9	9
CAAAGGACGAATTTAG	ref_5740_new	21	25	19	25	34	20	29	16	33	17
TTTAGTCAGGGGTACG	ref_5740_new	0	0	0	0	0	0	0	0	0	0
ACGTGAGAAATATCGC	alt_5740_new	29	45	36	30	38	24	44	34	50	30
ATTTTGCAAAAACGGC	ref_5740_new	46	74	36	46	74	44	56	37	73	39
CTTCAACGACTTCCCG	ref_5740_new	7	16	7	4	16	5	16	6	12	8
GAATGGTAAAGGCTTT	alt_2605_fdr	58	46	91	47	37	51	54	51	34	53
AGATTGCTACGCCAAG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCTAGTGTTATGA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CACTACTTGCTTATTC	alt_2605_fdr	17	11	17	12	12	10	18	5	17	12
CTAGTGTTCGGTAATA	alt_2605_fdr	30	27	37	29	27	37	32	32	36	20
ATCCAGCGGTGTGTGG	alt_2605_fdr	0	1	1	2	2	2	3	3	1	0
TGTTGGAGGCAGATTT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
ATTCACTACCTGAGCG	alt_2605_fdr	17	12	29	20	16	13	10	23	13	12
TACGTGCCTTGATTCC	alt_2605_fdr	32	21	48	28	31	42	43	28	32	43
CGGGGTGCCGGTCGGC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGAGATTTCGTA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTCAACCGTGGCTATC	alt_2605_fdr	7	16	11	8	11	5	4	5	7	5
CGGAATTGCTGACGTT	alt_2605_fdr	65	44	60	59	71	66	64	76	57	51
GTGTTCAAGGCCAGCT	alt_2605_fdr	61	69	82	74	59	62	78	53	81	42
TGATCCTCTCCTCGGA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGACATTAACGCA	alt_2605_fdr	47	44	67	53	47	53	53	49	35	52
CCGACCGAGCCTGTTG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGGATTTTCATAG	alt_2605_fdr	20	16	4	10	28	8	15	11	19	9
TTATTTAAGTCGCGTA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGGCTAATTGCCT	alt_2605_fdr	75	66	62	47	69	55	66	48	80	56
TGTCATCTCTAGCCTG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
AATATTTTGAGGAAAA	alt_2605_fdr	32	17	30	29	22	25	34	34	25	17
TTCTAATTGTTATCTT	alt_2605_fdr	11	4	10	8	11	7	6	10	8	6
GGTTCCAGGCGTATGT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
ACCGGTGGAATCGTAG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCAGTAAGCCACC	alt_2605_fdr	19	13	18	9	12	14	10	19	11	16
TATATTACATCTCGTG	alt_2605_fdr	18	25	33	17	16	21	29	18	28	20
TCCCGAAGCGCGGGAT	alt_2605_fdr	49	47	59	44	46	43	44	39	42	35
ACCATTCTCCAGCCCT	alt_2605_fdr	75	92	105	79	89	101	99	79	80	63
CGTGATAATAGAAGTC	alt_2605_fdr	16	13	18	16	18	14	14	8	12	16
ACCTCGCGAGGGGTGC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGGTTCTCGCAGG	alt_2605_fdr	17	10	12	11	10	15	5	6	11	3
TCTCGTTCTCGTGCGA	alt_2605_fdr	207	218	213	189	222	153	245	176	243	165
CGGTCTTGGTACCCGC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TCTGATGCCTTGATTG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGCTGTATGTCGT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CGCAACTGGCCCCACG	alt_2605_fdr	14	20	28	10	24	20	13	12	13	19
CATCGGCGCCAGCGAT	alt_2605_fdr	101	66	85	83	86	69	91	69	61	78
CGGTACCCGTCTTATG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GATATGTCGAGAAATG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TCACCGCGGAACGAAG	alt_2605_fdr	101	90	103	90	75	92	101	76	101	74
GACGATGCCCAGATAG	alt_2605_fdr	22	22	26	23	17	13	24	23	31	15
TTGGGTAGCTACACTT	alt_2605_fdr	79	72	129	93	84	93	77	114	81	92
AGCCGTCCCCGTTTAT	alt_2605_fdr	8	14	12	15	19	10	22	14	15	4
ATTATCGCCGGCATAG	alt_2605_fdr	33	24	21	26	29	24	25	25	30	29
TAGTCTATTAAAAATC	alt_2605_fdr	47	50	82	59	55	65	59	54	67	56
TACCAAGTTACCTCAT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCTTCTTGGCATA	alt_2605_fdr	25	25	43	33	40	24	26	28	32	25
TACGACACTTTACTTT	alt_2605_fdr	56	36	57	73	40	50	27	44	34	54
CTATTTTCTCTGCATC	alt_2605_fdr	38	44	65	32	27	36	25	42	42	36
CACCAGGGCCCAGTGA	alt_2605_fdr	74	89	78	89	72	73	81	66	85	64
TTTTCACGGGAAAGCT	alt_2605_fdr	101	106	142	117	89	108	121	105	128	91
CCTCCAATCACCCATA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTACCTGTATGGC	alt_2605_fdr	39	25	36	35	39	36	35	32	32	20
GATAGTTAAGTCTCCC	alt_2605_fdr	29	16	32	17	14	12	30	17	21	16
TGAGGATGTAAGGCCC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTCACTGAAGTCAAGA	alt_2605_fdr	43	38	40	30	27	39	30	38	38	26
TCTAATTACCTTATCA	alt_2605_fdr	66	71	83	66	76	66	78	71	69	66
CATGGCCAGAGAGGTG	alt_2605_fdr	49	66	66	54	44	42	57	37	64	32
TTTTCTACGTTGACAG	alt_2605_fdr	53	52	47	38	40	33	34	48	47	48
GCGGTTCCCTTTGTCA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTATCTGTCCGGA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTACTACGGATC	alt_2605_fdr	27	24	28	32	22	20	22	24	21	22
GTAAGTCAGTGGCCTT	alt_2605_fdr	29	31	44	37	33	22	26	41	35	42
GGACCCGGTTTTTGTG	alt_2605_fdr	13	13	26	14	24	21	24	20	16	17
TGAACAGGCTAATCCG	alt_2605_fdr	58	61	70	64	55	60	57	62	55	63
TCGTGAACGTTTTGCG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
AAGAATAGATACTTCT	alt_2605_fdr	18	16	20	21	10	15	21	19	13	14
GCTTTCTCATCTTCTA	alt_2605_fdr	23	22	25	26	29	37	20	17	18	12
CATGCAGTTGGACTAA	ref_2605_fdr	131	41	172	140	71	124	72	130	77	119
CAGGTGTTTTCCCATC	alt_2605_fdr	13	22	33	21	19	18	20	11	21	15
TTGAGGCATTAAGCTG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCCATTCTACTGT	alt_2605_fdr	0	1	1	2	1	1	1	2	1	0
TGTGTGTATTCTATGG	alt_2605_fdr	31	34	26	28	25	20	25	20	28	22
GGCCTCGCACACTTTT	alt_2605_fdr	22	23	36	34	22	34	32	21	18	36
ATATGAATATTCCTGG	alt_2605_fdr	48	38	47	31	36	41	29	44	41	25
AGATGGACTCTGTGGA	alt_2605_fdr	28	16	32	30	20	31	29	22	30	21
TTTAAACGGTAGGTAT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GATCGTACTTAGGTTG	alt_2605_fdr	56	62	69	64	72	61	52	56	75	59
TGTTGGTATGCTCTAG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
AATATACAGTGCCGCT	alt_2605_fdr	38	39	54	41	52	34	55	43	40	31
TCCAGACCGTCTTGCA	alt_2605_fdr	55	53	57	72	54	41	46	46	51	39
AGTCCGACTCTTCACC	alt_2605_fdr	22	21	31	29	17	24	20	14	19	25
CTTTAGCTTTTACTTA	alt_2605_fdr	12	7	7	17	5	9	8	9	15	5
ACCTGACGCTGTGAAT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTTACGTGTTATAGAC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TTCACTCAGATGTACG	alt_2605_fdr	44	38	51	46	46	37	29	39	35	39
GTATACTGGCACCCAC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCTGGAACGAATT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGACCTGTATAAT	alt_2605_fdr	27	37	43	51	24	46	38	42	33	27
CGGGATAGCGCTCTGA	alt_2605_fdr	84	56	87	66	86	87	55	75	71	84
AATAGTCCCGTTATCT	alt_2605_fdr	128	112	151	136	98	134	124	122	127	140
GTCTCTTCTCTTTTCC	alt_2605_fdr	29	24	53	34	14	44	29	27	23	30
TCGTCAGGGTATTACT	ref_2605_fdr	15	19	22	23	15	19	23	19	20	14
ACCTTGCGGCAGTTAG	alt_2605_fdr	9	8	19	7	9	11	15	8	13	3
GGCATGCCGGTGTACG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGGCTTAGGATCG	alt_2605_fdr	27	15	35	28	32	29	23	29	40	25
CATCTCGCGGGGCTGT	alt_2605_fdr	83	63	64	65	58	82	61	68	57	63
CCGTCGAACCTGGATT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCTGACTTTCCGAGTA	alt_2605_fdr	74	80	108	101	93	80	80	91	83	71
CAGAGGGTCCCCCTTC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCGCGCGGGGAGT	alt_2605_fdr	49	56	76	59	61	57	57	66	63	65
AATCGCAGCTATTATC	alt_2605_fdr	56	54	88	58	51	59	70	61	53	51
GAACTCCTGTTATTTT	alt_2605_fdr	8	8	12	11	12	7	6	7	3	10
GCTTGCTGTCATTCGT	alt_2605_fdr	1	3	0	1	0	0	0	1	1	2
GTGCGTAATAATTCCA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTAACGACTGAGG	alt_2605_fdr	74	65	109	83	80	96	77	80	99	59
CCTTTTTTATCGCCTC	alt_2605_fdr	59	52	54	37	60	53	65	42	57	37
TTCTGTGGTTTTCAGT	alt_2605_fdr	58	37	60	56	55	44	39	56	45	55
CATGTTATGTGTAAGG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCATTCGGCGGTATGT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGCAAGATTAGGA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTTCCGTGACTCT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCCATTCAATCCC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTTGAACCGTTTC	ref_2605_fdr	83	88	111	70	49	77	71	65	64	57
CTAAATTAACCGTCGT	alt_2605_fdr	13	26	24	20	13	14	20	21	27	14
TGGGTGTATACCTGCT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GATAGCCTATATCGTT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TTGTAGTCAACATATG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CGACTCTATGATCAAT	alt_2605_fdr	32	38	38	44	68	44	61	40	82	28
TTCGGTACAAAGCTGG	alt_2605_fdr	14	7	12	15	10	14	16	9	13	13
AAGTACCCTTATGGTG	alt_2605_fdr	185	140	199	188	158	159	201	165	194	139
TTGCGTCATTTCCTGG	alt_2605_fdr	11	9	31	21	18	16	16	18	22	21
CTTACGACCCAGTAGC	alt_2605_fdr	8	10	5	2	7	8	6	10	7	9
TTCTATCTCAGTGTTG	alt_2605_fdr	14	16	13	22	15	12	29	23	27	14
TGAACACGACCTGCGG	alt_2605_fdr	88	76	99	109	66	82	86	98	75	86
TTCTTTTGCGGGGTTT	alt_2605_fdr	79	51	94	90	68	77	84	81	75	72
CCGACTGACACTTGGC	alt_2605_fdr	4	8	7	6	26	8	12	6	15	9
GCGGTGTGGCGACGGA	alt_2605_fdr	24	14	34	42	28	37	39	22	28	21
GTATAAGAGTGCAGGA	alt_2605_fdr	72	72	94	95	76	79	91	66	93	50
CTCTTCGTAGTAGTGA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCGATCGCGTTCT	alt_2605_fdr	8	9	8	11	5	9	10	7	2	3
CCTATTGAATCTATGG	alt_2605_fdr	3	1	1	1	0	4	3	2	8	3
TGCGCATAACTCGCTT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGCTTTTGGCGGG	alt_2605_fdr	55	63	86	62	88	45	60	65	72	48
TACCTCAATGGTGCTG	alt_2605_fdr	8	4	4	8	0	3	2	2	4	4
GTATCACACATTATGT	alt_2605_fdr	10	10	16	13	9	8	9	6	5	6
CGAGTTCTTTTTCCTA	alt_2605_fdr	18	20	17	21	22	19	26	26	20	18
CTTTAAGCCGGCTGTA	alt_2605_fdr	16	11	28	29	20	34	22	25	23	25
CTTGTAACTTTATACT	alt_2605_fdr	1	1	3	3	0	0	0	0	1	0
TCAGGGAGTATATCTG	alt_2605_fdr	10	8	17	11	8	4	11	5	19	3
ACCCAGACCGCGGGCT	alt_2605_fdr	43	36	61	43	40	47	47	59	42	44
AGTGTCGGCGAGATCT	alt_2605_fdr	71	55	123	91	69	102	64	82	73	82
TAATCTTTAGCCTACA	alt_2605_fdr	33	17	35	27	23	21	27	20	29	21
CCTCCATACTTGTTGG	alt_2605_fdr	33	36	40	27	39	19	33	22	25	27
CACGCAATTTGTCCGT	alt_2605_fdr	8	5	15	16	16	3	8	8	7	7
TACTTCCTCACTCTCG	alt_2605_fdr	256	221	303	266	264	237	237	268	243	282
ACCAGCCGCATTAACC	alt_2605_fdr	22	79	23	27	68	27	64	18	57	13
GTTATGTGACGTATTG	alt_2605_fdr	15	12	11	9	10	13	4	7	7	10
TTGTTCACGCAAGGGT	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GAGGTAACTGTTTCAC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTGCTAGATGTTG	alt_2605_fdr	74	65	78	79	54	59	78	62	85	53
GTCTACTTCTGGATGG	alt_2605_fdr	28	29	40	27	24	29	50	23	26	22
CTTTTCCCGTCTTGGC	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
TATTGGTCCGTCCTGG	alt_2605_fdr	18	21	16	14	18	15	25	31	24	8
AACTACATTCACGATA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
AGTAGCTTAGCGTCCA	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTTTATTGTCGCTACG	alt_2605_fdr	27	47	27	25	31	23	29	37	28	20
CTAAGGGACGTGCTCG	alt_2605_fdr	44	37	48	33	24	29	36	30	35	46
TAGGGAACAGTTCATG	alt_2605_fdr	37	20	32	31	40	29	37	23	30	16
ATTACATGAACGAAAG	alt_2605_fdr	18	12	18	18	17	22	18	25	20	15
GAATTCCTTTTTTTGG	alt_2605_fdr	15	13	24	23	17	19	23	31	15	15
GCTTTGGAACTGTCAG	alt_2605_fdr	0	0	0	0	0	0	0	0	0	0
GACCTACGGATAGGCT	alt_2605_fdr	8	13	22	11	13	9	10	11	18	22
TGGAGTAGAGCGGGCA	alt_2605_fdr	20	17	25	17	24	20	17	13	9	15
ACCTCGATCCTTTTTG	alt_2605_fdr	162	149	208	193	162	160	174	126	190	145
CACCACGCGGGCTATC	alt_2605_fdr	16	19	18	15	11	16	22	20	16	17
TGGTACAACTAATGCT	alt_2605_fdr	111	137	135	136	159	104	134	127	162	95
CATTACGCTCGCCCAT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
CAACGCGTTTGGCTGG	alt_2783_upstream	309	212	359	326	230	312	223	284	268	261
CCTAGAGCATTAGCTT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TAAACTCTGTCACGCC	alt_2783_upstream	137	131	157	120	116	128	108	155	114	133
TTACTAATCTTGCGAC	alt_2783_upstream	23	18	24	26	21	17	15	19	15	30
GTCTTTTAGACTTCCT	alt_2783_upstream	91	63	100	90	57	55	81	87	74	88
GTAGCGTGTCGTTCAC	alt_2783_upstream	41	32	46	60	26	33	41	36	29	48
ATCCTGATAGGCAGCA	alt_2783_upstream	232	166	263	214	151	214	166	221	217	221
GGCTCATCGCAGGCTG	alt_2783_upstream	31	30	35	20	29	37	23	36	26	19
CACTTGCCTGGAGTTC	alt_2783_upstream	13	11	13	10	12	15	18	3	23	7
TTCGATGTTTCCTGCC	alt_2783_upstream	105	76	138	119	65	113	85	86	78	116
TCGCTTTCTGTATCAC	alt_2783_upstream	29	26	41	35	32	30	38	36	41	34
ACTGGTTGAGCCCGTT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAAGAATGTTTTA	alt_2783_upstream	84	74	125	110	107	96	86	84	93	102
TACTGATATCAAGGAG	alt_2783_upstream	17	17	17	19	20	17	9	18	13	22
CATATATGCTCGATCG	alt_2783_upstream	28	17	29	34	16	33	17	26	18	32
GATCATATAAGTTACG	alt_2783_upstream	7	3	17	5	4	8	4	7	5	5
TGTTCCCTCTTCTTTG	alt_2783_upstream	60	37	49	44	28	42	29	38	37	36
GGCGTTCTGCTACTTT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAGTTCTGGTTTG	alt_2783_upstream	22	9	24	13	10	17	12	16	17	20
CTTGAGATTCCACCAC	ref_2783_upstream	17	27	30	17	21	18	35	22	10	20
CTTAACAGGTGTGGGG	alt_2783_upstream	59	39	75	79	38	54	59	55	43	83
TTCGCGCCATGGTTTA	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTAACTTGACGCA	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTAGCTCGTACAG	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCGCCATGGTTTA	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTAGTTTATTTCG	alt_2783_upstream	30	31	41	36	31	27	37	33	39	34
ATAGTTGTATCGTACG	alt_2783_upstream	87	95	99	106	83	85	88	94	89	88
GGCTGCCGTAATATAT	alt_2783_upstream	89	56	83	81	58	85	59	86	73	78
AATGTTACAGTGGGTA	alt_2783_upstream	20	15	19	22	7	14	8	25	18	17
TGCGCCGGACTGTGTC	ref_2783_upstream	27	36	20	35	26	26	56	24	44	23
TAGTGAGTGTGGCAAT	alt_2783_upstream	131	80	165	116	92	121	101	98	86	122
AGATGCAGTATTTGGG	alt_2783_upstream	181	115	184	200	147	162	110	160	142	141
AGATTTACCTAATAGC	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TGCCACTGAATGCGGG	alt_2783_upstream	13	26	19	22	13	14	12	19	21	16
TACACATTACCAGGTC	alt_2783_upstream	31	21	51	27	28	33	18	31	22	29
GGGCCAATTCTCCGAA	alt_2783_upstream	3	2	6	2	2	3	0	4	2	8
TCGCTCTCATTCACTC	alt_2783_upstream	9	3	11	15	3	7	5	8	7	5
CCCGAAGTGATCTTGA	alt_2783_upstream	6	10	8	7	5	12	7	4	9	7
GGCCTGGGGTCCCCAA	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TCATGTGAATGGCTAA	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTGGCGGGAGCCC	alt_2783_upstream	9	6	15	18	14	14	4	6	19	16
CTGCGAGATTCCACGC	alt_2783_upstream	54	32	84	73	40	57	32	72	44	74
GGAATAAACAGCGCAC	alt_2783_upstream	2	1	10	3	2	1	1	2	3	2
CTTCACTCTCCTGTTA	alt_2783_upstream	22	27	16	22	18	15	21	14	27	11
TTGATTTTTCGTTTTC	alt_2783_upstream	84	41	110	116	46	115	38	79	43	78
CATTCTGGTCAATTCT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCTAAGATTCAAT	alt_2783_upstream	6	5	29	10	16	18	13	8	7	9
GCAGCGTCCTCGCTTC	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTCTCCGTCGATC	alt_2783_upstream	0	5	2	0	10	0	14	0	9	0
GCTACTCCCATTGTCT	alt_2783_upstream	1	8	4	5	4	3	2	6	11	0
ATCCAGATCGGACCAT	alt_2783_upstream	22	7	10	15	9	11	12	13	15	10
TTACTTCATGGAATCC	alt_2783_upstream	3	8	12	11	1	9	8	9	4	5
TGGATCGGAAACCTCT	alt_2783_upstream	35	21	46	33	39	35	27	24	19	37
TCTATCTTTCGCTTAA	alt_2783_upstream	4	1	3	7	1	3	4	6	4	6
CTTCGTGCACCTATAT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
GTGATCTACTTGCATC	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTCGGTTGCGCC	alt_2783_upstream	60	42	62	57	48	46	66	62	61	54
TCCATGGATTCGGCAT	alt_2783_upstream	70	26	89	68	53	63	49	54	47	49
CCTATATGAGTTTTCT	alt_2783_upstream	8	5	10	8	9	10	12	12	12	5
CCTGCCTGTGTTTGTC	alt_2783_upstream	2	8	11	6	2	5	3	4	1	6
GTTGTGCTGACTCGGT	alt_2783_upstream	18	13	20	18	16	17	14	17	10	13
TGAGAGGTAATGTGCA	alt_2783_upstream	29	15	20	21	6	20	14	24	18	19
CCAATGTTGGGAAATT	alt_2783_upstream	37	22	40	38	29	39	29	42	25	34
CGGAAGTGATTTACGT	alt_2783_upstream	36	24	36	30	26	33	36	40	22	30
GTTCTGTGGTGGCTTA	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TACCTTGCTATAACGT	alt_2783_upstream	2	8	12	5	4	10	8	4	1	2
TAGGATGTCCAGCGCC	alt_2783_upstream	1	2	3	2	3	5	1	4	3	4
CTTCATCATCGCCGCC	alt_2783_upstream	25	14	28	23	20	18	12	27	18	17
CTGGGCCCGTGATCAC	alt_2783_upstream	5	2	13	5	3	9	2	4	5	2
AAGAAGGGGTGGATCA	alt_2783_upstream	105	49	137	93	69	99	71	106	68	98
GAGCCGGCTCGCATAG	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
CATCGTGCTGGCGCTG	alt_2783_upstream	11	9	6	7	4	6	4	0	6	5
GTGGTTAAATAGCTCG	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
CTGCCGATCTAGAGTC	alt_2783_upstream	12	55	13	10	66	12	67	20	53	10
TTTTATCTCAACTGAT	alt_2783_upstream	18	24	28	27	19	9	4	24	17	14
GAAAACCAATCCGGTC	alt_2783_upstream	121	77	166	132	88	143	73	105	101	113
GCATCCGAGCAGGTCC	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TCTACTTCCTCGATCA	alt_2783_upstream	16	12	17	10	12	18	17	13	10	13
GGACCACCTTTTGGAA	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGAATGAGGCCTG	alt_2783_upstream	26	8	20	35	20	29	19	30	20	24
TTTGCTAGTCGAGGAG	alt_2783_upstream	73	59	105	78	47	59	57	51	58	48
TCATGACGTGACTTGG	alt_2783_upstream	26	20	17	15	11	17	22	20	20	14
TGTATAGCCTCGGGGT	alt_2783_upstream	52	22	52	43	36	35	14	43	38	40
CGTTGCATGATTTCTT	alt_2783_upstream	53	25	55	78	18	55	23	62	29	47
TGCCGCCTACTTGTGC	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGGCCTACGTTC	alt_2783_upstream	139	104	118	119	105	122	90	120	115	106
TGGTCTGGATTGAATC	alt_2783_upstream	95	74	121	99	78	79	73	90	70	98
TCCTAGAGCAAAGTGT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGTATGCCCGTCC	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGGTGATGGATCT	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGGATTTTTAGT	alt_2783_upstream	12	10	9	12	5	15	6	9	7	14
CCATAAGTCCAGTACT	ref_2783_upstream	6	1	5	6	5	6	9	6	3	3
TCCTTTCGCGCATTTG	alt_2783_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTGATCGGTCCAG	alt_2783_upstream	15	18	28	14	13	22	16	18	28	21
CTTTGCCGGGTGCCGC	alt_2783_upstream	14	18	23	25	15	17	17	23	15	15
CATTGTTGGGGGAAGC	ref_337_missing	32	48	45	52	48	42	34	45	46	42
TATGATGAGGTAAGTC	ref_337_missing	68	54	98	93	45	72	43	68	46	74
AATTCTAGATACAGCG	ref_337_missing	20	7	10	15	9	15	6	8	12	18
AAGCGCCCTATCGAGA	ref_337_missing	23	19	24	28	19	21	22	31	11	12
GTGCCTGTACTTCGAG	ref_337_missing	13	8	15	6	8	14	11	10	20	10
TGGTTATTACGTCGCA	ref_337_missing	22	18	20	17	14	27	21	22	12	22
CCTACTTTAAGTCGCC	ref_337_missing	51	28	43	39	28	35	21	32	32	21
ACCGATACACTTTCCA	ref_337_missing	33	24	31	25	27	28	43	39	35	34
TTGCCTAAAAGCGATA	ref_337_missing	73	57	103	71	49	76	51	69	64	59
AATGCATTTTAAGGGA	ref_337_missing	0	0	0	0	0	0	0	0	0	0
TGAGTAAACCCTGCGA	ref_337_missing	42	37	68	55	34	37	33	55	36	41
AGGGTTGATTCTTTTA	ref_337_missing	29	9	22	23	20	15	17	27	3	20
CAAGCAGTTTAACCTG	alt_337_missing	10	8	18	15	10	12	12	17	13	12
AATCCATGGTTCGGTC	ref_337_missing	0	0	0	0	0	0	0	0	0	0
TAATCGGTTTAGTCCG	ref_337_missing	24	11	18	11	13	18	11	22	13	19
CTAACTCTAGTTTATA	ref_337_missing	48	53	60	53	48	54	33	58	59	58
CGAAGTCCCGTCAAGC	ref_337_missing	39	43	41	37	36	42	53	35	42	37
AGAGTAGTACCTATAC	alt_337_missing	39	28	34	41	33	34	28	36	32	36
ACTTAGAGTTAGTTTT	ref_337_missing	28	27	31	38	30	27	31	26	24	29
TCCTTGCTAGCACATG	ref_337_missing	629	487	684	568	544	513	528	611	534	477
CGTCTTTAGTTGTGTT	ref_337_missing	121	117	182	136	90	121	88	129	123	131
CGTTAGGGACTGTCCC	ref_337_missing	0	0	0	0	0	0	0	0	0	0
GCTGGCTTTCGTTCCT	ref_337_missing	4	6	13	4	13	10	5	10	6	9
TCGTGCAGGTGTAAAA	ref_337_missing	6	7	5	15	6	5	6	7	8	5
TTACTTGGGCTTAGTG	ref_337_missing	0	0	0	0	0	0	0	0	0	0
GGCAAGGAATACGTGT	ref_337_missing	33	16	19	31	15	15	16	15	14	20
GCACATCTAGAACAGT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGGTTGTACGCG	ref_337_missing	43	35	47	58	39	50	37	33	46	37
TGCGTATCAAGCACCG	ref_337_missing	0	0	0	0	0	0	0	0	0	0
TTTGTCTCATTTAAGA	ref_337_missing	51	55	54	53	44	58	47	65	35	69
AGGCTCCAAACCCTTT	ref_337_missing	10	9	16	17	9	10	9	8	8	6
CTGGTTGGTCCTAATC	ref_337_missing	8	5	6	15	3	9	10	3	7	7
CTGTGCCAGGATCGCG	ref_337_missing	65	31	112	76	44	63	38	49	60	62
GTGCCGCGCAACAGTC	ref_337_missing	0	0	0	0	0	0	0	0	0	0
ACCTTGCTAGCACATG	ref_337_missing	1	0	1	0	0	0	0	0	0	0
ATTGCTGCACGACAGA	ref_337_missing	0	0	0	0	0	0	0	0	0	0
CCATTTCCGGGTGGCC	ref_337_missing	0	0	0	0	0	0	0	0	0	0
GGTATCCCAGGCACAA	ref_337_missing	19	26	20	26	24	34	16	15	21	20
CACGCTAATCGTCTGT	ref_337_missing	21	11	29	14	8	20	8	18	20	12
TATGCGGCACCTAAGT	alt_337_missing	33	31	45	50	22	40	31	42	30	26
AATAAATATGTGCGTT	ref_337_missing	0	0	0	0	0	0	0	0	0	0
CTTCAAGTTTTATTAC	ref_337_missing	64	78	84	76	81	65	58	65	87	50
TCCGGTTCCGTAGTAG	ref_337_missing	208	161	267	207	174	183	190	183	191	187
ACCACGGTTGCAATCA	ref_337_missing	0	0	0	0	0	0	0	0	0	0
GCTTCTTGCGTCTACT	ref_337_missing	13	6	13	16	12	20	8	9	10	12
AAGGCAAAGGGGGCCT	ref_337_missing	11	10	13	14	20	23	9	15	12	24
TTGCGCACGCTTGACG	ref_337_missing	46	39	56	46	46	44	46	34	46	25
CAGACTATCGCTCGGT	ref_337_missing	0	0	0	0	0	0	0	0	0	0
TAGCCACCAGCTTCCG	ref_337_missing	0	0	0	0	0	0	0	0	0	0
AACCAGGCGCTTCATG	ref_337_missing	29	11	26	14	11	18	11	15	12	13
GTCGTCTGGTTCGTTA	ref_337_missing	220	139	295	238	164	242	212	216	169	188
CTCGTTGTGCCCTGTC	ref_337_missing	34	45	33	48	37	26	46	41	48	34
AGCCTAAGATTAGTTG	ref_337_missing	62	65	104	73	60	65	79	73	66	61
AACAGCCGCTAATGAG	ref_337_missing	19	36	27	26	26	25	35	27	34	20
TACTAAGCGTTACGGG	ref_337_missing	10	18	38	15	23	23	23	22	20	14
AGCGTACCTCACTATG	ref_337_missing	0	0	0	0	0	0	0	0	0	0
GTTACTCCTGGCGTTG	ref_337_missing	14	23	13	8	23	9	20	18	24	6
CCTGTGTGCTCGTTCA	ref_337_missing	10	4	11	6	15	12	9	6	5	17
CTCGCATACGACGCCC	ref_337_missing	0	0	0	0	0	0	0	0	0	0
CGGAGCTATTGCCCGG	ref_337_missing	33	24	54	28	34	33	29	29	25	24
GTGAGGCGTCCATTAT	ref_337_missing	0	0	0	0	0	0	0	0	0	0
CGCTATCCATTAATAT	ref_337_missing	27	22	32	27	23	34	21	21	30	17
TATTGTCAACGTTTAA	ref_337_missing	6	5	7	9	11	9	11	4	5	7
ACATATATGTTTGATC	ref_337_missing	7	8	10	12	7	15	10	10	10	10
CTTGTCCTAGTAAATA	ref_337_missing	0	0	0	0	0	0	0	0	0	0
CTGCGCAAGTGACAGA	alt_337_missing	99	83	90	95	77	93	74	75	78	89
GGGGCCTGGTTGTGTG	ref_337_missing	116	117	186	139	113	104	94	138	119	129
GCCCTATGGCCCGCCG	ref_337_missing	0	0	0	0	0	0	0	0	0	0
CCCTAGTATTGTTAAT	ref_337_missing	89	75	114	94	69	73	78	86	90	85
TCGTGGTGCCAGACGG	ref_337_missing	74	65	96	69	75	70	77	64	69	56
GCGATCGTGTCCGAAG	ref_337_missing	4	6	7	9	4	10	3	7	7	5
ACTTTATGTATGGTAA	ref_337_missing	61	42	70	55	55	46	47	53	43	50
TCCCCCTAAATAGCCA	ref_3129_RC	3	3	3	3	1	4	2	2	5	1
AGTTCATATCTAAGCC	ref_3129_RC	35	37	49	31	29	37	32	28	41	36
GGCCGAATCGTAACTG	ref_3129_RC	45	64	39	46	51	51	61	40	66	51
AGGGCACGTCTTCGCT	ref_3129_RC	49	48	58	50	68	41	64	49	61	41
GTACGTACCCACAAGC	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTGACCGTCTAG	ref_3129_RC	66	78	81	73	89	52	110	67	95	66
TCCCTCAGCTTGGGTT	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
CGGTCGGGGATTATCT	ref_3129_RC	57	53	58	45	53	65	62	42	56	50
CCCAGAGACTTCGGTG	ref_3129_RC	10	10	11	10	17	14	20	9	16	9
GGTAAAGGACCTGGGC	ref_3129_RC	51	65	65	53	70	70	61	42	62	53
AAATTATGTTCTGTGA	ref_3129_RC	10	9	12	6	10	7	9	9	7	11
CGCTTACTATCACGAA	ref_3129_RC	26	34	39	26	44	33	55	17	42	26
CCGTTTGGCCCTTCAC	ref_3129_RC	0	0	1	0	1	0	0	2	0	0
TTCATGATTGTTCCAA	ref_3129_RC	136	194	201	140	160	122	179	135	170	147
CAACATGGAGCTTGGG	ref_3129_RC	193	210	236	208	204	170	200	166	204	180
TAGCTCAATCCTGTAT	ref_3129_RC	108	141	132	112	110	106	107	91	129	105
CTGCATCTATGCCGTA	ref_3129_RC	60	62	58	62	67	50	61	58	53	59
TAAATTTTTTTTTGCT	ref_3129_RC	63	57	68	60	66	61	61	33	72	58
ATATTCCTCAACTATC	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
GGAACGGTCACGATCT	ref_3129_RC	46	55	56	55	52	51	45	50	48	42
GGGAGTAAAGGTCCAC	ref_3129_RC	9	1	8	11	5	8	8	12	8	8
GCGGTTTGTATTGAGG	ref_3129_RC	55	59	64	40	65	39	74	44	59	46
GCCGGTAATTGCTCTA	ref_3129_RC	3	0	0	2	2	1	1	6	2	0
GCTGTTGACAGAATAT	ref_3129_RC	35	25	35	29	24	24	40	29	27	30
TCCTTTCCACCGCTCT	ref_3129_RC	22	22	26	29	37	25	19	20	22	28
CAACGCCTCCAATGCG	ref_3129_RC	9	27	16	11	25	8	20	13	19	7
CTTTTAATTTTCACTA	ref_3129_RC	1	7	2	2	8	0	3	5	10	4
TATATAGACTGCTAAC	ref_3129_RC	16	16	23	13	29	23	18	15	32	15
AAATCCCAAAGTTGGT	ref_3129_RC	12	11	29	14	23	9	12	8	20	7
AACTGGAGCTCTGCAT	ref_3129_RC	36	48	47	36	54	22	50	35	58	27
TGAGCTTTACATTCAA	ref_3129_RC	90	101	91	102	84	73	116	69	81	67
CCTATAGTGTGGTTTC	ref_3129_RC	20	36	36	13	33	15	35	24	54	12
CTTACGAGTTGTCTCC	ref_3129_RC	24	30	31	22	29	26	25	22	22	22
CTGTAGGACCTATGAC	ref_3129_RC	21	25	15	22	12	19	27	14	30	26
TTAGGCTTCTATCAGG	ref_3129_RC	43	53	66	49	56	56	49	46	51	34
GTTTGGGTTTCTAGCT	ref_3129_RC	33	14	35	19	32	24	27	17	24	23
ATTGCGCGATTTGCAT	ref_3129_RC	7	14	10	7	8	15	4	6	3	5
CAATCGTGCGAGAATC	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
CATCTGCTTTATTAGT	ref_3129_RC	12	17	29	20	25	11	23	13	17	12
GAGTATTTAAGGTTAC	ref_3129_RC	11	10	16	15	17	14	16	15	8	14
CGGGTCTGTGGTATAA	ref_3129_RC	8	10	2	10	28	7	9	5	20	3
CACCTTTGCGCGGGCT	ref_3129_RC	68	70	63	54	52	46	53	62	69	67
AGTGAAGATAGTTTAT	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
CTACATTTTTCCACTA	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
TTTGGTACTCGGAAGC	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
TCTGGCGCCCATACAA	ref_3129_RC	2	1	3	4	3	2	4	0	1	1
CGTAGGCCTAATAGGG	ref_3129_RC	84	66	88	96	89	67	71	67	92	67
CAGTCCTGCGAATTTT	ref_3129_RC	31	44	49	27	39	29	56	40	46	35
GCCCTAACCGCGCCTT	ref_3129_RC	32	29	23	34	26	20	32	27	18	22
GGTTGTTTTCAATCTA	ref_3129_RC	100	139	154	125	127	98	145	110	138	102
AACAGGTGCACCTTAG	ref_3129_RC	0	4	0	1	4	1	8	2	5	0
CTGCACAGCCCTTGCC	ref_3129_RC	38	32	47	36	41	31	40	39	49	34
GTGAAGTATCCTTTTC	ref_3129_RC	60	67	87	56	75	60	88	77	79	66
TTGTAGTTATTTATGG	ref_3129_RC	26	36	33	23	35	28	38	37	41	26
CACACAATACAGGTGC	ref_3129_RC	27	58	38	26	59	32	54	41	63	30
TAGTCCGTGAACCGAT	ref_3129_RC	0	0	0	0	0	0	0	0	0	0
CTGGGTTCCTTCCGGT	ref_3129_RC	104	98	149	115	126	111	114	93	151	110
GGTCCTACAGCTCCTC	ref_3129_RC	50	65	82	62	64	57	82	51	77	49
TGGGAGTCCCAGGGAG	ref_3129_RC	32	36	42	27	32	30	27	40	35	38
GGCATGGTTTCCGATT	ref_3129_RC	9	3	12	12	9	4	4	8	5	20
AATGTGGACCCTCTGC	ref_3129_RC	14	17	18	24	11	8	26	12	12	21
CCTTGCATTTGGTGAG	ref_3129_RC	37	50	28	31	41	30	24	22	31	20
TGGGATGTGGAGTTTT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGCCGGGGCAGTT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTTTCGAACTCAT	ref_306_fdr	3	6	5	8	12	6	7	4	5	2
CTTAGTCGCCTGTAAC	ref_306_fdr	20	83	21	24	72	15	69	21	54	15
CGACTCGATCTGATGC	ref_306_fdr	1	11	4	1	10	1	19	2	5	2
CATTCTCAACCGTTCA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
GGTACTGCGAGCTAGT	ref_306_fdr	8	23	14	14	14	10	25	7	11	7
CCAAGGATCATTTTCA	ref_306_fdr	6	11	8	10	9	7	7	10	21	5
TGAGACTAAAGGTTAG	ref_306_fdr	26	54	29	26	28	24	59	15	46	24
CTTTCACTATTCCAGG	ref_306_fdr	16	42	12	15	44	17	40	18	42	15
GCCGCGCCCCGATGGC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TTATTTAAGGTTCGCC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TGGAATTAATCAGTAC	ref_306_fdr	13	19	12	12	15	20	15	15	28	16
GTGCCTTGAAAACATA	alt_306_fdr	29	71	46	39	64	45	96	37	98	27
CCCGTTACACTCCTTG	ref_306_fdr	14	61	13	9	58	15	76	20	73	9
CGTATCCCTTTTACGA	ref_306_fdr	80	125	96	98	123	94	131	84	185	90
CATTTTTCGTATCGCA	ref_306_fdr	0	2	0	4	0	3	8	1	2	5
AAAATCGGAACCTTGC	ref_306_fdr	15	22	20	17	25	25	24	13	40	21
TTGCGCGTTCGCTAGT	ref_306_fdr	17	25	20	22	50	17	50	9	41	22
TTAAATTCTCACCGTT	ref_306_fdr	17	37	27	20	29	21	32	19	18	13
TGCAACCGATGTGAGA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCCAGTCGCCCTA	ref_306_fdr	96	119	93	86	109	65	124	75	141	86
TGCATTGGGCCGATTT	ref_306_fdr	17	31	18	16	42	22	32	15	42	14
GTACCTTTTGAAACGG	ref_306_fdr	10	13	15	12	14	13	19	8	23	17
TGTTAGTTGGGATGCG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CTGAACTTAACGCTCC	ref_306_fdr	5	14	12	8	15	8	13	3	12	8
GCTTGAGGTGGCGATG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
GACTGCCACTTTCGAA	ref_306_fdr	24	50	45	50	44	24	42	28	62	18
ATAGTGATTGACCGCT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TGAACTTGCACAATCG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTCCGCTCTCCAA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTTCACTGTTTAA	ref_306_fdr	2	3	1	1	10	4	11	2	11	3
CCGCCTGAGACGTTTT	ref_306_fdr	48	56	39	69	49	60	48	54	49	53
TGGCCAGGGATTGACT	ref_306_fdr	12	11	8	14	14	4	17	8	11	13
GGTTGGGAGAGAGTTT	ref_306_fdr	11	35	6	9	21	13	38	11	16	11
AGCCCCTAGAATAACT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTTCCGCACCAGA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTAAGTAAAAGG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TCCATTCCTACTGAGC	ref_306_fdr	26	44	45	26	54	27	36	39	41	34
CCGGACTTTCACGCTC	ref_306_fdr	8	16	4	4	10	7	16	15	13	7
GCAATTGCTTTCACAT	alt_306_fdr	13	22	17	18	29	14	21	17	21	19
ATTTAGTCTGAATCGA	ref_306_fdr	25	33	19	21	42	29	40	34	42	23
TGTCAGCATGATCACT	ref_306_fdr	13	19	13	14	11	5	12	8	13	14
TAGTCGGCGGCCTAAC	ref_306_fdr	40	60	46	36	59	51	85	33	89	23
CCCCCAGTAGTGTCGA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTTACGTATTTAT	ref_306_fdr	11	13	14	11	12	5	13	5	15	7
GCCTGTCGAATCGGCC	ref_306_fdr	19	38	18	19	37	15	39	12	31	15
CGGTAGTTCAGCGTGT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TACAGACCTCAACAGG	ref_306_fdr	14	25	21	8	25	11	16	13	30	15
GAACACTCACTTGCCT	ref_306_fdr	8	38	7	14	37	9	39	8	32	6
AGGTCCTACTATATAC	ref_306_fdr	44	65	38	45	58	29	78	35	88	36
GGGTGTGTTATACTTC	ref_306_fdr	20	33	13	21	33	24	26	15	59	17
CTCCCAGCTATTTGGT	ref_306_fdr	29	61	49	31	62	27	78	25	75	17
ACACCTTTTGTATAAG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCTTTCATTTGCT	ref_306_fdr	38	68	44	48	89	36	73	37	91	46
ATCCCGCGGTACCCCG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
GAAGGCCGTTTATTCT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCGCCCTCTCCT	ref_306_fdr	39	60	61	42	69	54	63	41	91	48
ATTTATTTGCTTTTGG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTAGCGGTACACC	ref_306_fdr	41	76	41	40	90	31	78	39	74	42
GCAGATCTGGTACTGT	ref_306_fdr	24	79	37	34	91	39	98	19	105	30
TGTACAAAAAGCCCGA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ACAAGCACCGGAGTTC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTTGTTTTAATCC	ref_306_fdr	133	193	169	115	176	119	215	118	182	112
GCTTCTTGCAAGCCTC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CTCTAGCGGTGTTTCT	ref_306_fdr	1	2	0	2	4	2	4	1	8	1
TCGAAGTCATTTGCGC	ref_306_fdr	6	7	9	5	9	6	6	3	4	3
TATTTCTGTTTAAACC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
AACTTGTTCGGCATCG	ref_306_fdr	15	21	31	29	47	13	27	18	32	17
ATCGGCATTCCTTGTT	ref_306_fdr	2	6	4	0	0	3	4	0	2	1
GTCCCTGTGGGTGTTT	ref_306_fdr	29	33	29	12	18	30	43	26	47	9
CACTTTTCTCTGCATT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
AAAAAGACTTCATGAG	ref_306_fdr	23	30	26	37	32	21	39	13	37	19
GCAGGGTGTGGGATAA	ref_306_fdr	15	38	32	23	27	14	24	15	37	13
TTATGTTTAAATGTAA	ref_306_fdr	3	8	3	8	14	7	11	8	13	5
AGTACATTCCTGTAGG	ref_306_fdr	6	21	11	4	18	4	16	3	12	8
CCGGCGCGCGCGTCTA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
AAAGGACGCCTACTTG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
AGAAGTAGCGGGTCTC	ref_306_fdr	22	41	35	20	38	33	43	13	48	23
TGAGCGGTGTCAGCGC	ref_306_fdr	3	1	1	1	8	2	2	1	6	3
TGCGAGGGACACGTAC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ACGTATAACAGCACAG	ref_306_fdr	77	151	73	98	135	66	182	83	195	88
CGCGGGGTATCGACGT	ref_306_fdr	4	13	6	10	1	2	9	8	7	4
TTCAAAGTTTTAGGAT	ref_306_fdr	56	86	70	49	96	60	103	48	93	47
AGCGCCTGACTACTTG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TATTGCCGCTTGTTCA	ref_306_fdr	1	4	4	0	2	1	1	2	7	2
TGCACTCTACGAACCT	ref_306_fdr	4	3	0	7	7	3	1	4	13	3
TACCGTACCGAGACTT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGCAGCTTGGATA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CACGAAATTTTAGAAA	ref_306_fdr	52	112	95	73	144	60	112	80	104	70
TTGCTAGCAACGGTCA	alt_306_fdr	98	136	126	126	132	85	164	85	158	100
AGAGGTCTTAATACCG	ref_306_fdr	2	1	1	1	1	2	0	1	3	0
AATCGAGTCGGCGGTG	ref_306_fdr	47	70	64	52	81	45	79	54	83	47
GTACTGCTGATGCTTG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CTTTAGTCCCAGCGTC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CGAAATCTTTCTTCTC	ref_306_fdr	6	10	10	9	13	6	4	4	9	8
TTTCCCGCAGCATGAC	ref_306_fdr	44	71	61	52	66	41	50	44	72	47
AATCAACTTTTTTCTC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTAGTATTGTCTT	alt_306_fdr	31	44	24	34	46	19	38	34	41	33
GCTTCCTTACAGTACT	ref_306_fdr	2	11	10	5	12	6	10	7	7	6
ATTTCGCATTGTCGCA	ref_306_fdr	53	65	34	44	47	35	50	38	64	37
GGTTCGTCGTAAGATG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CACTCAAATCTGTCCC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
GGATGTGATTAATTGG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGTCGTGTGCTGG	ref_306_fdr	16	14	13	8	20	7	15	7	16	9
CTGGGTCAAAATTGAG	ref_306_fdr	34	62	28	22	39	23	42	18	42	23
CCTGGATAGCCATTAT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TCACGCTCGGTTTGAC	ref_306_fdr	6	7	11	6	5	2	6	2	15	5
GGACGACTGACGTTAC	ref_306_fdr	18	25	20	19	26	14	28	12	27	19
TCCGTTGTCCCCGGAC	ref_306_fdr	20	35	32	25	56	30	33	22	46	19
TAGGTATTTCCATTTG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
AAACATGCTTGCATTA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGTCTTACTGATC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
CAGTATCACCGGGACG	ref_306_fdr	9	23	12	13	19	20	16	10	18	18
TACAGTTGGACTGCAG	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TGCATGCACTCTGATT	ref_306_fdr	4	17	12	15	10	10	16	13	28	2
TTATCAGTCTGCTGGG	ref_306_fdr	12	14	5	10	13	9	13	11	16	7
CCGGGCACACTAATTA	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
GACTCTAGGCCCTTCC	ref_306_fdr	6	5	5	4	12	11	14	13	5	6
GTACATGTTGACAGGG	ref_306_fdr	4	8	3	4	8	7	6	4	6	2
GGAAATGGTTCTTTCA	ref_306_fdr	15	24	17	19	24	19	21	14	21	17
TTGCACTATGCAAATA	ref_306_fdr	7	15	7	5	19	14	19	7	16	7
TCTTTTTATTCGGTCT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCCACTCTCGGTT	ref_306_fdr	2	6	4	3	9	5	5	7	7	5
CGGCGCCGAGCACCCT	ref_306_fdr	26	32	23	28	34	27	31	20	37	24
GCTGGGACAACCCTGC	ref_306_fdr	15	42	23	25	43	23	26	17	42	26
GCCCCCCCCCTTCGCT	ref_306_fdr	58	77	71	59	60	68	100	61	76	57
TGCCTATGTTCCAAGC	ref_306_fdr	31	35	27	23	51	20	48	15	41	26
CGCCGCACTTACTTCT	ref_306_fdr	7	25	18	15	26	24	12	12	44	15
TTCGCCTATTGTAGGG	ref_306_fdr	12	11	17	7	24	11	26	10	24	9
ACCCATATGAACAGCC	ref_306_fdr	13	25	7	11	19	9	21	10	18	9
GTCCTTCAAGTCTGGG	ref_306_fdr	29	56	40	41	63	30	54	34	55	34
GCCCCCCCCTTCGCTC	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTTATTACAAAT	ref_306_fdr	14	17	6	1	15	16	23	13	30	9
CTTAATTGTGTAGCGA	ref_306_fdr	50	55	42	38	62	36	69	34	91	27
GCCATGCTTTGCCCTA	ref_306_fdr	10	12	6	11	17	4	13	7	14	4
ATATGCAGTGTACAGC	ref_306_fdr	27	57	33	29	58	27	43	31	50	20
AGCGTAATATTGGGTT	ref_306_fdr	24	32	33	28	45	20	44	22	26	10
GAGATGTTCCGGACCT	ref_306_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCCGTATCATTCT	ref_306_fdr	68	87	85	54	80	60	108	53	120	56
CACATCCTAATGGTAA	ref_306_fdr	19	26	18	14	24	16	35	15	38	11
TTCGGTGCTGCACGTA	ref_306_fdr	11	14	8	16	20	13	14	8	21	9
AAATACGTGTTGTTAC	ref_306_fdr	9	10	17	7	15	15	20	8	30	7
TTCTCTCTGGGATACT	ref_306_fdr	109	189	140	127	216	102	222	124	239	128
CTGATGCGAGTCTTGC	ref_306_fdr	5	14	7	7	14	14	8	4	14	5
CGTTACTTCTGTATTC	ref_306_fdr	3	11	10	5	17	2	5	6	6	5
ACTTGATTTATGCTGC	ref_306_fdr	50	70	55	42	50	34	58	46	52	41
ACTCAGCATTCTCGTA	ref_306_fdr	10	13	18	8	22	5	22	6	17	8
CACCTCCTCAATTCAT	ref_306_fdr	0	3	0	2	2	0	2	0	4	3
TTCCAAATAAAGATAT	ref_306_fdr	26	25	38	23	44	16	39	12	39	26
ATAGATCCGGCGCGAA	ref_306_fdr	48	71	65	54	76	43	78	45	96	47
GCTTGCTTATGAGGTC	ref_306_fdr	2	4	5	3	7	5	1	2	5	3
GCTGCCACCGGGTTAC	ref_306_fdr	1	2	0	0	0	0	0	0	0	0
TCACTACTATGCGTCA	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
AAGCAACCGCGGGTTG	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
TCTGTGGTACGCCGAT	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
GAGTTAAGGTACTGTT	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
CTGTACTACATAGCCT	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
TGCGGAGGCTTAAGCA	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
CGTGGTCATGGTGAGT	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
CGTTCGCATTATGGGT	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
CCTTGCTGACCCATTG	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
CTGAGTAAAAACCGGC	ref_3470_missing	0	0	0	0	0	0	0	0	0	0
GTTTCGCCTATTTAAT	ref_169_negative	9	22	16	12	20	17	17	9	14	22
ACACTACTGGATCGCT	ref_169_negative	28	29	26	25	24	29	31	17	36	20
CGACGATAGGTTGACT	ref_169_negative	77	93	78	57	85	78	91	56	104	51
TGCCTTATAATATCTC	ref_169_negative	5	7	11	4	9	7	4	6	11	1
AGTCCATCCGGAACAG	ref_169_negative	140	153	159	128	158	115	204	145	191	121
TTCTACCTACCAACCG	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TTGTAATGTTGCGACC	ref_169_negative	16	18	15	12	16	8	14	15	20	6
TAATCTTTCTTATTAC	ref_169_negative	0	0	0	0	0	0	0	0	0	0
CAAATTCAACGTCTCT	ref_169_negative	18	22	25	19	32	8	31	22	22	18
TTTCGGACTTGTGGTG	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TTAGACAGCCCACGGG	alt_169_negative	0	0	0	0	0	0	0	0	0	0
AATCGTCATTGTATTC	ref_169_negative	17	25	18	28	23	19	41	13	27	16
TATGCCCCGGCTCTAA	ref_169_negative	0	0	0	0	0	0	0	0	0	0
GTCGGAGGGAGAAACA	ref_169_negative	27	31	36	39	34	33	31	30	44	27
ATAACTGTGGCTATTC	ref_169_negative	6	18	6	10	12	4	14	12	14	11
AGTCCTATCTCTGCAG	ref_169_negative	11	18	15	11	23	12	16	14	21	17
TCATTCGGGTTCGATT	ref_169_negative	17	28	27	13	32	15	27	25	38	14
TTTATTGTATGATCGG	ref_169_negative	0	0	0	0	0	0	0	0	0	0
ACGTACCAGACGCACT	ref_169_negative	29	70	38	30	80	21	70	21	102	20
TGCCGTATTCCAGGTT	ref_169_negative	29	43	26	24	58	30	43	18	47	17
AGTTGCTTACTAGGTA	ref_169_negative	21	35	16	17	26	19	26	23	16	21
CCGACTTGGTGCGGGG	ref_169_negative	21	19	16	11	15	8	23	15	26	13
GCTCTTGTTATCGTAA	ref_169_negative	3	4	5	4	5	3	3	2	1	3
ATTACGCTGGATAACC	ref_169_negative	13	11	19	14	23	13	16	9	14	9
TCACGAATTCCTTCTG	ref_169_negative	0	0	0	0	0	0	0	0	0	0
ATCGCAGATGTGGGTC	ref_169_negative	39	53	35	27	36	34	35	33	48	23
CTATATCAACTAATTT	ref_169_negative	44	72	52	53	57	42	68	46	94	36
CTCACTTTGGGTTTAA	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TGTCTTGTGACTGCGC	ref_169_negative	16	27	19	20	29	16	23	19	33	16
CCCGCATCATGGTTGG	ref_169_negative	37	48	37	35	46	44	53	33	44	29
TCCAAAAATTAAAGCC	ref_169_negative	1	0	0	0	0	0	0	0	0	0
TATTGCATTTCGTTCC	ref_169_negative	7	4	7	10	5	6	6	4	2	1
AGTGTTGGCGGACATC	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TGTCTCACGTCCACGC	ref_169_negative	0	0	0	0	0	0	0	0	0	0
GCTCTCCACCGTCCGC	ref_169_negative	6	5	3	0	7	5	6	0	8	0
TTTGACAGATGGTCGG	ref_169_negative	16	27	22	20	36	18	24	17	22	20
TATTGTGATTTGGTCT	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TCTGCCCTGGAATATA	ref_169_negative	76	126	75	86	125	81	134	68	121	82
ATTGTCTCAATTAGAT	ref_169_negative	0	0	2	1	0	1	2	0	1	1
TCCCCGTTGTCCGTCT	ref_169_negative	7	14	7	4	24	6	25	4	26	4
GCACGACATGCGTGTC	ref_169_negative	48	97	73	71	88	74	69	68	88	63
CCATATTGACGAGTAA	ref_169_negative	23	35	27	21	39	24	33	24	32	25
GCCATAACCCAACCTC	ref_169_negative	0	0	0	0	0	0	0	0	0	0
GCTACGCAGTATATCA	ref_169_negative	0	0	0	0	0	0	0	0	0	0
GCGCTGTCAGGCCAAC	ref_169_negative	0	0	0	0	0	0	0	0	0	0
AGCAGCGTTTTGCAAC	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TGTCACGATAATATTC	ref_169_negative	22	31	33	28	52	33	46	37	43	41
TTCTCTCGTCTCCTAG	ref_169_negative	29	38	41	24	33	31	41	14	26	30
TCTTGGCTCTAGAACA	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TATTAGACCTGCTTGC	ref_169_negative	36	38	34	22	45	34	39	35	38	37
ATCCTATTTGTGCAGG	ref_169_negative	13	20	20	23	24	14	11	9	23	14
TCGCACTATTCCCGCA	ref_169_negative	29	27	21	17	22	20	38	28	41	27
CTTCGCTTTCATACCA	ref_169_negative	1	6	3	5	10	7	3	7	7	2
TAGCGTCCGGTATTGG	ref_169_negative	34	41	28	30	46	31	51	27	42	34
TCGATTAGACGGATGA	ref_169_negative	28	47	38	38	39	30	28	23	49	32
ATGCAACGATAGAGCG	alt_169_negative	20	21	24	22	21	28	22	13	32	22
GGTTTCGGTCGGACGA	ref_169_negative	0	0	0	0	0	0	0	0	0	0
TTTTATTACGAGGGTG	ref_169_negative	0	0	0	0	0	0	0	0	0	0
AGTAACCATTGGCGCG	ref_2913_reverse	14	34	23	13	26	26	15	30	21	21
GGCACTACCCAATATG	ref_2913_reverse	6	15	6	6	9	6	10	6	2	8
GTTACGTGGGTAATTA	ref_2913_reverse	240	186	267	250	195	210	216	194	212	199
TCGGTGTGGTTGTTTA	ref_2913_reverse	35	18	35	30	29	21	32	18	26	32
AGTAATTCTCCACGCG	ref_2913_reverse	81	48	69	61	61	62	46	44	62	48
TTGGCCGTACAGTCAG	ref_2913_reverse	10	19	36	9	13	23	19	11	15	22
TTTCCTTTCGGTTCCC	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGTCTTTAAGGG	ref_2913_reverse	146	132	172	156	116	111	117	131	185	125
TTCCCTGGACCCTCTG	ref_2913_reverse	20	26	39	15	18	25	17	21	9	19
ATGTCACTGTCCCGTA	ref_2913_reverse	69	40	64	65	70	50	47	58	61	59
ACCAAATGCAATGGCC	ref_2913_reverse	53	52	56	59	57	48	53	42	52	46
CTTGCTAGTCCTATGT	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
AACTGGGGTCCCTCCA	ref_2913_reverse	40	57	82	71	52	66	60	53	58	52
TCTTTGACGGGACTTT	ref_2913_reverse	29	33	36	29	25	16	33	24	24	31
GTCACCGAGTGCCGTT	ref_2913_reverse	15	27	23	20	32	7	11	19	23	17
CGTTTAGTTTAGTCAT	ref_2913_reverse	51	53	54	55	47	41	54	45	45	56
ATCTGTTTGAGGCTCC	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
TGATCATTCGCTTCTT	ref_2913_reverse	91	53	81	74	58	52	65	75	50	58
GGGCCTTGTCCAGCGG	ref_2913_reverse	8	8	23	14	6	10	8	7	9	8
TTGTGCTCCTTAACTG	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGCCCTTCTATGC	ref_2913_reverse	129	114	143	129	105	113	125	119	117	117
GCTGGGTTTAATGGGT	ref_2913_reverse	20	14	32	24	15	30	11	13	23	15
CGGCGATCTAACTTCC	ref_2913_reverse	6	4	20	7	9	14	7	11	8	6
GTATTCTTAAGCTGGT	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTGACTCGCAAAT	ref_2913_reverse	13	15	16	11	18	13	10	24	12	9
TGCGGGGTAGGTCGCC	ref_2913_reverse	17	16	27	12	15	25	16	19	14	14
GCGAATGTTTCGGATT	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
GCTTACTTGTCAAAGT	ref_2913_reverse	12	7	9	12	8	11	9	4	9	4
AGCAAGTCTGTATTAC	ref_2913_reverse	56	50	63	52	45	43	54	42	41	44
TTGGTCCCCTTCGTTG	ref_2913_reverse	34	33	51	36	44	44	39	37	36	29
CCCATACGGTCATGTA	ref_2913_reverse	32	34	50	35	25	38	32	24	40	32
TGTACGACCATTCGTC	ref_2913_reverse	51	42	55	60	41	57	29	54	48	41
TCCTAGTTAAGTCATC	ref_2913_reverse	87	101	98	79	88	81	96	63	91	74
TCATCTACTGTCCGTT	ref_2913_reverse	50	39	61	59	80	40	61	48	55	37
TGGTAGTATCCCAATA	alt_2913_reverse	37	35	41	36	35	33	35	31	36	26
TCGTTGTTACACTGCA	ref_2913_reverse	18	27	36	31	26	13	30	22	22	28
GAATTGGTGCACTCAC	ref_2913_reverse	28	31	42	31	34	27	33	29	38	30
CCTATGATGTTCGGTG	ref_2913_reverse	78	84	80	70	83	51	83	53	84	62
GCACGTGATATCCCAT	ref_2913_reverse	5	6	6	9	11	4	10	2	8	8
TCCACACCAGTGTGTG	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
TATTGTATGGGTTGAA	ref_2913_reverse	44	51	59	50	39	40	49	38	62	42
TAACCGATGCGACGTG	ref_2913_reverse	18	26	28	17	19	20	22	20	47	23
TGGGGTTGCATCCAGG	ref_2913_reverse	30	13	24	25	16	18	17	16	22	22
AGAATGCATCCTTCCG	ref_2913_reverse	28	29	30	30	21	30	33	14	24	29
TCCTCGGGCTAGGGTA	alt_2913_reverse	74	60	82	85	76	75	66	85	59	74
CAACGTGTATACTATG	alt_2913_reverse	48	22	31	36	33	24	36	33	40	35
CTTTAATGGGGGTCGT	ref_2913_reverse	56	43	71	49	54	43	56	53	45	38
GGCTAAGCGGTAGACG	ref_2913_reverse	32	32	50	38	54	33	47	46	45	38
GAGAAGTTTGAGGATT	ref_2913_reverse	41	29	39	31	28	34	29	34	27	48
CCCTGGCAGACGGCCC	ref_2913_reverse	2	0	6	4	6	3	3	0	4	1
AAGGTGTATAGTCGTT	ref_2913_reverse	70	76	77	61	69	82	52	74	78	59
GTATTTCATCAGTGTT	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCCGTCACTCTGT	ref_2913_reverse	377	361	417	394	337	329	325	339	403	333
GATTTGATAGCGTTTT	ref_2913_reverse	102	86	99	82	78	99	76	82	80	79
ACTAGTACCCTTTCAC	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGCCGGAACCCTA	ref_2913_reverse	35	30	29	36	31	23	35	27	20	21
ACTCGCGATAGGTAAT	ref_2913_reverse	23	21	29	32	31	33	23	24	25	29
ATTAGTGGCTAAAACG	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
TTAGAGTGTCCTCTCC	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
GACTACCAGGGCGGCA	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
CATTATATTTTGACAG	ref_2913_reverse	57	69	77	71	59	50	78	54	61	50
GAGTCGCGGTTAAGTT	ref_2913_reverse	7	10	23	11	13	6	13	6	9	9
TTTCTGGCGTGATAAG	ref_2913_reverse	175	111	186	176	156	180	125	139	142	156
CACCGGGAAATAAGGT	ref_2913_reverse	4	7	9	5	6	6	7	11	2	3
CCCCGTTTTATAGCGT	ref_2913_reverse	52	54	76	48	49	48	58	44	58	44
TAGAATCGTATATATC	ref_2913_reverse	14	12	25	16	17	22	24	20	16	12
TCATCGACATGTCGGC	ref_2913_reverse	131	118	162	138	110	107	134	115	104	112
TCCCACACTTGTTTAG	ref_2913_reverse	122	141	136	112	130	113	146	108	128	97
CATGCCCTATACAGAT	ref_2913_reverse	29	31	36	45	42	48	27	37	25	30
CACTTGACAGCGCGAT	ref_2913_reverse	60	44	60	61	49	65	53	47	38	49
GTCCTATTAGTTTCCG	ref_2913_reverse	15	13	18	18	15	15	15	12	13	14
CACTGTACGCGGATTT	ref_2913_reverse	43	27	46	30	50	34	35	59	34	47
TGCTGTCTGATGCTTG	ref_2913_reverse	19	20	16	15	6	20	18	11	20	16
GGGGATAAGTCGCATC	ref_2913_reverse	294	169	336	293	176	262	131	283	171	257
TCCATCTAGAACAGTT	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTAGTATGTTATC	ref_2913_reverse	53	44	86	67	67	51	48	51	77	51
CTATTTGAATCCCTCG	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCCTACAGGTCTT	ref_2913_reverse	21	16	28	30	27	20	23	27	32	32
AGATTTCGTGGTCGTT	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTAGGGCCGAACT	ref_2913_reverse	52	59	84	86	71	63	71	43	70	69
ACGAGTCTTTCCCGTT	ref_2913_reverse	8	5	14	17	5	8	8	12	9	13
TGGCCCCACATTCGTG	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTCCAGCCGGCGC	ref_2913_reverse	54	41	58	38	34	51	22	32	35	36
TTATGACGATGTTCTG	ref_2913_reverse	26	11	16	19	13	15	17	15	18	16
TTATGGGATTTTTAAG	alt_2913_reverse	12	27	27	24	27	19	17	21	22	23
CTAATACGCATCGGTG	ref_2913_reverse	26	23	28	17	15	23	16	25	18	28
GGGGCATGTAACGGAT	ref_2913_reverse	28	24	16	25	30	28	26	21	28	24
GCGCGAGAATGGCATA	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
ACTTAGAATACTCTTT	ref_2913_reverse	45	57	66	36	45	66	46	51	58	44
GTGCTGTTTTTGTAAC	alt_2913_reverse	14	2	15	18	14	15	12	11	10	9
AGTTATCACCTACACA	ref_2913_reverse	10	16	13	14	12	11	11	6	8	8
ACTCACCCGCCGCTGG	ref_2913_reverse	3	9	9	3	14	1	6	2	15	10
CGTCAACGTTTTCGTA	ref_2913_reverse	87	78	87	85	73	76	87	81	77	47
AGTGTATTCGTATGTT	ref_2913_reverse	55	64	64	42	55	41	45	39	54	45
CCGCCCTTGCGGGGAG	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAACCTTGAGCTC	ref_2913_reverse	9	4	5	9	4	10	4	14	8	4
TGCTTTTATTTGTTGT	alt_2913_reverse	159	89	157	145	89	142	73	116	86	131
ACGGTCATGCTCACCC	ref_2913_reverse	2	14	14	7	16	15	19	7	16	11
GTGGTTAGATGTCAGC	ref_2913_reverse	17	11	28	27	21	25	18	20	15	19
CAAACTTTTCCACAAA	ref_2913_reverse	58	36	59	54	40	50	37	37	42	30
CATCGGACGCTCATTG	ref_2913_reverse	30	37	35	37	44	22	40	29	45	26
GCTCAACGGTGCTATC	ref_2913_reverse	8	32	10	11	16	10	26	12	28	8
CGCTGGGGGAGGACAT	ref_2913_reverse	29	32	40	30	29	44	37	42	25	31
ACTGGCTGTTAGAATC	ref_2913_reverse	19	7	16	14	8	8	13	11	10	18
GACGTTTGATGGCTCG	ref_2913_reverse	54	64	60	62	51	65	60	48	53	44
GTCTAGGGCAGGTACT	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGGGTTGAACTTT	ref_2913_reverse	18	7	18	12	11	19	16	15	17	12
CCCGCGAACCTTGTGG	ref_2913_reverse	5	7	9	9	3	3	8	7	3	1
TCGGGGACTTGCGCAG	ref_2913_reverse	9	10	10	10	2	5	4	3	12	10
GTCGCTCCGGACGATG	ref_2913_reverse	4	13	14	11	13	7	20	11	8	11
GCAGTCCTAGGAATGG	ref_2913_reverse	0	0	0	0	0	0	0	0	0	0
GGCACCCAGTTCTCTT	ref_2913_reverse	21	20	44	32	27	30	28	22	25	40
CGCCGGGAGGGGTTTC	ref_2913_reverse	53	48	55	42	36	48	33	55	29	36
CTGATATGTGACACCT	ref_2913_reverse	53	55	78	59	69	54	66	60	71	60
TATGGCACTCTCCGCC	ref_2913_reverse	41	25	60	41	32	36	41	29	46	37
ATCCGCTCTAAACCCG	ref_2913_reverse	60	96	87	93	66	66	74	82	93	71
CCCCCCCGTCGGTAAC	ref_2913_reverse	1	3	0	2	8	1	14	1	11	0
ATTCTATAAAATCCGC	ref_2913_reverse	1	2	7	3	2	1	4	3	1	3
CTATTAGCGTCCAGCC	ref_2913_reverse	45	52	59	37	37	58	53	54	49	57
GCGCGCTCTTCCTCTC	ref_2913_reverse	13	12	16	15	7	15	13	11	14	7
CTAGTCTTCAGGCGCC	alt_1924_RC	102	39	111	100	26	77	44	80	48	85
TAACAGCTTCGATCGT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CTGGGGTCGGGGTCGT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CTGGCTAACGTGCATC	alt_1924_RC	74	60	102	76	48	61	83	75	96	47
CCGTGTTGTGGATAAT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TTTGGAGGTGAATGGG	alt_1924_RC	128	39	109	109	37	81	47	93	46	87
TCGCGGACTTCGTAAC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AGTTATATTCCAAGCA	alt_1924_RC	96	41	128	135	51	97	53	119	54	90
TTTGGACATTTGGCCT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TGTCCACTTCAGTAAC	alt_1924_RC	36	30	34	32	3	28	16	32	17	26
TGTTTACGCCGTCCTG	alt_1924_RC	150	64	194	201	58	138	67	157	86	139
ATGGTATTGGCTTTCC	alt_1924_RC	89	35	81	89	35	64	46	52	39	81
GGTGGTCCCTTTTGTC	alt_1924_RC	63	31	84	77	29	49	24	67	37	43
ATAGCTCGGTTAAGGG	alt_1924_RC	39	17	55	42	18	46	16	23	17	32
ACGGCTCACTTGACGT	alt_1924_RC	310	173	391	329	166	307	155	378	192	292
TCCTGTGTTCTAGAAC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TGTTATACGTCTCGCA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
ATTTATTCGTCTTCTA	alt_1924_RC	50	21	80	46	20	60	16	60	23	43
GGCATCCGGTCACTGT	alt_1924_RC	14	21	23	12	16	3	13	7	27	8
ATACTTGGTATAAAGA	alt_1924_RC	111	57	122	101	51	86	55	104	49	92
CTCTTGTACTTGTCGG	alt_1924_RC	44	19	46	59	27	40	18	38	35	39
GTAGGGGTTCGGTAAC	alt_1924_RC	121	59	168	161	63	125	65	149	84	110
CTACTGTACCCTCTTT	alt_1924_RC	31	11	38	30	9	28	14	37	19	23
CTTATCATGCGTCCAG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CCTACCTTGTCTATGG	alt_1924_RC	169	135	237	202	125	171	153	170	138	131
AATGGGTATTTCCTAC	alt_1924_RC	297	125	327	286	109	254	158	241	120	213
TTGTTACATCTTTGGA	alt_1924_RC	24	21	32	32	16	29	19	35	20	21
GCGCGTCTGTCTTTCT	alt_1924_RC	40	19	51	49	27	40	27	43	33	35
AAGCACCTTTTTCTCA	alt_1924_RC	472	162	535	468	163	440	186	440	190	356
TCGGATTAGAAAAACC	alt_1924_RC	58	22	58	49	27	55	22	44	30	44
TGTGGCTTCGTTTTCC	alt_1924_RC	30	22	33	37	30	24	31	53	32	27
GTTATTTATGACTCTG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AACCAGTGGACTGGCC	alt_1924_RC	17	51	32	25	64	18	59	20	77	18
CTCTACGGCTTGTAAG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AAACGGGCGCTCGCCC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AAATCATACGCCTCAG	alt_1924_RC	43	17	41	35	23	41	21	36	16	30
GAGTGACGTTGAGGAT	alt_1924_RC	58	24	71	51	21	46	12	55	28	56
GAACCAGGTGGAGGCG	alt_1924_RC	61	30	88	73	40	66	37	80	55	58
TTCTACGCTATATACG	alt_1924_RC	63	22	61	64	21	42	34	51	31	56
TGTTTAGCACCGCCAG	alt_1924_RC	258	104	355	306	126	242	133	261	128	232
CTTGCCGGGGGTGCAG	alt_1924_RC	28	18	39	27	11	21	19	25	6	19
TCGCTGTTTTCAGGGG	alt_1924_RC	46	10	54	35	13	35	15	37	18	40
GTAGACCATGGCACTG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TTCGACGCTGGTCCAA	alt_1924_RC	35	10	19	31	14	34	13	31	22	14
TATGCCTCCCTTCTGA	alt_1924_RC	258	106	303	312	110	237	124	226	119	233
CGGGCTCATTGTCTCG	alt_1924_RC	35	20	48	34	12	37	14	22	14	31
TGTTATTTGTCACTAA	alt_1924_RC	14	9	16	13	8	28	10	11	11	15
TGTGAAGAGATACCAC	alt_1924_RC	3	2	4	5	2	1	0	2	3	3
GCAGGATTGACATGTT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AAACGGTTGACACTAT	alt_1924_RC	60	40	100	77	25	71	37	67	29	57
CTCGTTTTGGTCATCA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GTAGTCCACGCTCGGA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CTTTTCGCTGGAGCTT	alt_1924_RC	32	12	30	44	21	30	15	26	21	32
GCCACATCCGAACATC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CATTCAGTAGGTACGC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GTTAGTACTAACCTAA	alt_1924_RC	256	134	250	244	128	198	153	203	136	218
TGAGCTCACGAGAACC	alt_1924_RC	115	52	153	124	40	101	51	112	60	100
CTGCCTATGGCTGTGG	alt_1924_RC	72	50	80	73	38	74	30	78	44	54
CTGTGTTTGGGAAGTA	alt_1924_RC	11	10	21	24	7	16	10	28	14	20
ATTTTCTTTAGATCGC	alt_1924_RC	331	109	370	307	110	290	129	309	140	262
TTAAGGACCGTGGCCG	alt_1924_RC	34	9	33	31	9	31	16	24	12	27
CGGCATATTCTCATTA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GTTTTACGGGAATTAA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AGAATTGCGGTTAAAT	alt_1924_RC	25	9	24	19	6	23	12	27	18	22
CCTCAGGTCTTTGCTC	alt_1924_RC	39	33	57	51	33	38	33	43	31	39
AGTATGGAATTTCGCT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GACGCATGGACCCCTA	alt_1924_RC	32	22	68	47	19	42	15	48	22	39
TACCTAGTATATCCAA	alt_1924_RC	24	9	19	14	9	15	11	23	12	15
CGCGGGTGACACGCAA	alt_1924_RC	137	56	173	142	56	135	58	115	60	106
GATAGAGTTCGGTGGG	alt_1924_RC	17	12	31	13	12	15	12	12	15	19
TCTTCGGTCGTTTTAC	alt_1924_RC	18	11	35	31	18	18	8	26	14	24
CCCAACTATCCTTTTC	alt_1924_RC	63	31	85	76	32	68	41	50	20	46
GCGTAATGGATCAATA	alt_1924_RC	1	0	1	0	0	1	0	1	0	1
ATTCGTCCTTTCGTCA	alt_1924_RC	97	43	106	93	33	91	40	110	38	83
TTTATCGTGTAACTCA	alt_1924_RC	139	70	205	179	72	151	73	163	91	127
AGGGGTTTCCAGTTTT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GGTGGTTGCATCGCTT	alt_1924_RC	14	10	22	24	8	15	15	18	5	17
TCTCAAAGACGAATGA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AAATGGCCTCTGCCGT	alt_1924_RC	41	22	40	24	13	28	21	25	20	35
CATAGATCTGGGGACA	alt_1924_RC	56	30	73	72	22	63	27	55	31	43
GGTTAATTATCCATTG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TGAGCGGTCATTCCCT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GTTGTCGTGTAACATT	alt_1924_RC	86	35	103	105	39	67	29	65	39	71
GGTCACGTTCGCGTAC	alt_1924_RC	137	125	123	107	132	90	126	104	129	84
AAAAGGCAGGCATGTG	alt_1924_RC	104	36	96	81	42	60	35	73	40	70
CAGCCCTCTGCCCACA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GCCCGTACTTGCCGAA	alt_1924_RC	39	19	50	48	15	49	20	44	31	40
GGCTGAGCATCGCTTC	alt_1924_RC	35	21	39	49	9	44	13	35	15	40
TATGTGATATTTACGC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TATTCTAATCGTGCTC	alt_1924_RC	12	9	18	8	7	11	9	10	5	10
GCCTCAAAATGACTCA	alt_1924_RC	77	27	69	65	28	47	32	67	27	63
CAGTTTATGTCCGCGA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TATTCCTAGCTGCCAC	alt_1924_RC	56	20	48	43	19	46	24	27	19	42
TTCCAGCAGTTGCTAA	alt_1924_RC	99	56	143	129	70	94	61	107	49	104
CTATTAGAGGTTATTC	alt_1924_RC	80	43	105	97	31	72	51	81	36	74
GTGTGCCATGGCTATC	alt_1924_RC	45	22	54	50	26	42	24	49	22	42
AGGGGATTCCCTGAGT	alt_1924_RC	35	12	43	14	14	32	12	23	11	24
GGGTTGTAGTCTCAGC	alt_1924_RC	15	6	36	23	15	22	10	25	18	14
CAGTACGTGCCGTCCG	alt_1924_RC	72	22	106	91	47	68	44	71	66	64
GCTTCGCCTCTCCTGC	alt_1924_RC	255	144	368	353	114	269	132	265	132	242
TTCCGTCGTATCCAAA	ref_1924_RC	97	58	103	110	62	68	57	87	53	82
TCTTCTGGTAAGCGTG	alt_1924_RC	94	46	151	108	41	98	70	81	53	81
GCCTTCGATGTACACG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CGTATATTTTTACTCT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GGTATACGGAAGTACG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
GGGCAAGAGTTTCTGA	alt_1924_RC	21	4	30	18	6	17	11	18	4	25
CCTTTATGTGTGCCCA	alt_1924_RC	28	10	27	27	16	22	12	27	14	32
CCGGCGGTTCGCAAAC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CAGGACGTGCAAAAAC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
ACGCCATATCAGCGAA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GGCTTTCCGAGTCTAC	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
GGACTTGGTTCTCTTC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TGTCCTCAAAGGGGCA	ref_1924_RC	25	5	25	26	4	17	11	15	8	19
TTCTCATGTGTTTGCT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CATATATTTACTCTCT	alt_1924_RC	145	36	159	139	52	117	60	122	40	114
GCACCTGGTGCGTACT	alt_1924_RC	131	67	153	117	56	117	83	96	71	106
TGAGTCCGCACTCGGA	alt_1924_RC	31	10	40	31	16	38	11	28	16	14
GACCAACTTTAAAGAC	alt_1924_RC	15	4	19	23	13	12	9	23	7	10
TAACTGTATTTACCGC	alt_1924_RC	36	11	30	34	17	30	14	31	13	22
TGCTGTCGCGCACATA	alt_1924_RC	16	7	18	15	7	18	7	10	4	5
GACCCTCTCACCCGTT	alt_1924_RC	49	26	58	50	21	69	14	51	15	31
CTGCTGGTGCCTGGCC	alt_1924_RC	161	68	179	179	84	156	74	156	83	150
TTGTGCGTTGCACATT	alt_1924_RC	75	39	77	65	43	76	33	56	41	54
CAACCCTTCCACGGCT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AGTCTTCAACTTCCTA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TACATGTATACGCTAA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GATCCTTGAAATTAAG	alt_1924_RC	51	17	61	54	18	39	14	35	22	34
CACACATTTCTCATTA	alt_1924_RC	11	5	20	16	0	12	7	15	11	10
GTTTAATCTTCGGCTT	alt_1924_RC	137	59	188	167	55	128	54	149	76	129
AGGCTTGTTCCCCGAA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CTGAACAAGCTGCCAA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GCTCAAACGCCGCTGT	alt_1924_RC	11	5	9	10	3	7	4	10	4	9
TACCCAAATCTTGGTC	alt_1924_RC	23	40	41	28	42	29	40	30	39	18
TGTCAGCTGACCTTCA	alt_1924_RC	13	19	20	3	20	10	16	7	29	9
TTGACGTGCTTATAGA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
ATCGATCGTAGATCAC	alt_1924_RC	0	0	1	0	0	2	0	0	0	2
GGCTATAAAGTAGGAC	alt_1924_RC	26	15	38	25	6	18	8	35	15	13
GTATTCTCCAGATTCG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
ACCGCATAACGTACAC	alt_1924_RC	190	114	223	188	107	167	146	174	143	153
AGGTGGTGTTGTTTCA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AATTTTAACGAATGTG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CCTAGTAAGATCTTTT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CCGCTGGTTAAAGCTC	ref_1924_RC	82	24	80	82	21	68	35	78	30	59
GTAGGGCCGTCATAGG	alt_1924_RC	120	46	126	128	57	82	44	126	62	92
AAAGGTGAAGGACTAG	alt_1924_RC	140	62	164	136	78	139	47	132	48	135
ATTATTCTAGTGCGAT	alt_1924_RC	24	12	22	16	9	16	5	11	13	26
ATCAGTTAGGACTCTT	alt_1924_RC	71	28	102	80	26	58	25	49	30	54
CGTTTCTCGCGACGGT	alt_1924_RC	29	14	20	22	19	20	10	27	22	13
CTACGGCGCGATGGGA	alt_1924_RC	34	12	40	39	17	33	17	34	15	31
CTGCTGCATCATAGGA	alt_1924_RC	53	22	45	47	22	47	19	47	21	38
GCTTACATAGTAAAGT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TATGGCGGCGAGGTCA	alt_1924_RC	125	60	186	153	43	128	56	143	44	123
CCTATACACGTGATCT	alt_1924_RC	7	11	16	9	11	1	12	18	12	10
CAAGACTTGTGACATT	alt_1924_RC	69	32	60	56	35	61	35	51	37	44
TCCCGGCATGACTTGA	alt_1924_RC	3	2	3	4	2	7	2	5	3	3
ATTGAAGCTCAAGAGC	alt_1924_RC	7	0	11	3	5	6	6	12	4	13
GACTCCGGTAAGGGAG	alt_1924_RC	121	55	143	145	58	119	59	111	61	85
TTAGGTCTTTCGTAAT	alt_1924_RC	31	16	39	29	13	36	17	27	22	32
CAAAGAGACTCCTGTG	alt_1924_RC	28	14	24	31	19	36	12	28	6	20
GGGATTGCCTGCCTTA	alt_1924_RC	91	43	129	124	57	106	45	98	60	96
GAAAACTGTCATTAAG	alt_1924_RC	140	65	150	121	55	128	76	122	73	105
TTGTCCGGCTCCGGTT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CTAGTTGGTCTTAGTC	alt_1924_RC	115	60	155	137	66	103	67	125	74	136
AAACCTTAGGCGTGCT	alt_1924_RC	22	5	17	25	15	19	12	10	12	17
ACTGGGCAGTTTCATT	alt_1924_RC	339	175	384	319	174	280	159	299	170	288
TTAGGAGCATGTTGTC	alt_1924_RC	71	52	114	89	52	92	37	90	49	74
GGACTGATGGAACACT	alt_1924_RC	35	25	46	46	16	33	17	41	24	35
CCTTTATCGCTCTGTC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TCGGTCCTCTAGAACA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GTGGGTATCAAAGGAG	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TCTTAGGGCCCAAAGC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
AGTGGTCTAGAACTGA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TCGAGGGCGGAGATTC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
TATTATTAAGAGCACC	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CAGCTTGCTCCGTTCT	alt_1924_RC	183	90	243	205	142	187	111	202	113	132
TATTAGGCCTAGCGGT	alt_1924_RC	52	19	69	47	20	41	26	53	28	53
TTCGACGCTGGTCTTA	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GATGCGTTGAAGAGTC	alt_1924_RC	69	31	85	70	38	64	50	66	39	62
CCCGTGGCTCGCACTT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
GTATCTTTTTCAAGGT	alt_1924_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTCTAACGAACA	alt_1924_RC	39	22	62	37	15	41	24	44	22	44
ATTTATTTTGGTCATT	alt_1924_RC	104	32	115	71	29	76	42	72	46	75
TTTTCGCGGAGTGCGG	ref_2582_upstream	8	14	12	5	5	5	11	6	8	5
TTCACACTTCCACTAC	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CAACGCTGGGTATTTT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTTGGTTGTAGTT	ref_2582_upstream	22	29	32	20	28	21	34	15	35	26
CTAGTTGGTTTGCTTC	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TTACATCCGACGCACG	ref_2582_upstream	53	51	57	46	68	53	53	44	74	52
CTGTGAGGCTTGCGGG	ref_2582_upstream	63	65	57	64	59	55	80	52	80	55
GCTGATAGTTAATGGT	alt_2582_upstream	56	69	55	58	41	43	71	55	48	40
GTAGTAGTTTTTGGAG	ref_2582_upstream	29	29	48	43	44	32	42	29	41	44
AAGCAGTTAAGTTTAT	ref_2582_upstream	6	5	9	4	9	6	3	7	9	2
GTCCCGGACAGCAAGT	ref_2582_upstream	105	121	123	101	117	95	131	99	124	100
CCATCCCTCAGTCTCT	ref_2582_upstream	4	16	5	8	22	13	13	12	12	10
ATCTCTAATTAGAAGC	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
GTGAGTCTTGTATGGC	ref_2582_upstream	6	11	13	11	9	5	16	7	7	8
AATGTTGATCGAGCTA	ref_2582_upstream	4	9	15	3	7	5	17	6	5	7
ATAGTGTAGTAGCCTC	ref_2582_upstream	1	3	2	1	2	5	4	0	5	1
CGGCCCTCCAGAGAGT	ref_2582_upstream	107	133	122	93	130	90	131	77	119	92
CTCTCCAGTAGGAAGC	ref_2582_upstream	19	22	25	20	20	11	18	3	18	9
AATCGAATTTGCCTAT	ref_2582_upstream	17	31	25	13	33	28	24	20	30	24
GCGGAGTTAGTACCTT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGCTCGAGCCTT	ref_2582_upstream	142	134	169	162	199	134	175	133	173	145
TTAGACGCTACGTTTT	ref_2582_upstream	29	46	53	26	47	24	61	38	56	34
TTTTACGTGTTAGTTC	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGCTCCGGTCCAG	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TAGTAGGTTTAGAAGA	ref_2582_upstream	10	9	7	8	12	4	8	11	17	7
TGTTTTTATATAAGAC	ref_2582_upstream	10	14	21	16	16	13	21	18	14	13
GCTGAGCGTGTAGACG	ref_2582_upstream	168	191	202	183	203	161	242	175	247	158
CTGAACCAGATTAAAT	ref_2582_upstream	24	28	36	22	28	31	35	22	22	30
AATCACGTACCATCCT	ref_2582_upstream	57	88	50	48	93	76	100	44	105	49
AATGTTGGAACTTTTG	ref_2582_upstream	61	68	54	58	61	46	62	41	45	35
ACTTGGCTTAGCGGGC	ref_2582_upstream	4	13	6	3	6	5	14	10	9	7
ATGTAGGATATGAAGA	ref_2582_upstream	10	11	8	11	11	11	13	7	8	12
ATCTCTGTAACACATC	ref_2582_upstream	10	10	7	3	19	1	14	4	15	4
GTTCAACTTCCGCCCA	ref_2582_upstream	22	22	32	22	30	18	31	22	30	30
CGGTCAAGCGATCGGG	ref_2582_upstream	3	2	0	1	5	0	1	3	0	0
TCTGAACGTGGCTCCT	ref_2582_upstream	3	8	5	6	10	6	6	4	5	5
ACTGTGGACAGCGTTT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGGTAAGCTTCGG	ref_2582_upstream	8	5	10	7	12	4	11	7	4	4
TGATTTTCACTCATTC	ref_2582_upstream	7	24	6	8	20	8	17	11	23	7
TTGGGTAGTGATCATC	ref_2582_upstream	7	27	15	11	17	14	11	14	10	11
AGACACGCTGGGAGAG	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTGTGTTGTTCTT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TAACTCGTAATTTATT	ref_2582_upstream	127	126	152	138	120	103	111	142	121	127
CGTATTCGACATTTTC	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
ACGGGTGTTGCTAATT	ref_2582_upstream	236	259	326	269	323	250	342	253	323	214
TCGCGTGCTTTACCGC	ref_2582_upstream	12	9	16	10	14	9	16	10	26	5
TGTCGAGATCAGAGTC	ref_2582_upstream	24	25	26	21	25	19	34	12	36	21
CATCGCCACAACGTCC	ref_2582_upstream	62	94	83	66	115	61	107	54	111	54
ATTTAGACTGCGTAAC	ref_2582_upstream	2	11	11	1	7	5	8	4	14	1
GCGGTCAGCTCACGCT	ref_2582_upstream	54	49	57	67	32	52	60	48	60	60
TTTTGCATAGCAAGTG	ref_2582_upstream	4	12	18	11	7	16	7	9	12	9
TTATGAGTTTTTTCCT	ref_2582_upstream	117	140	157	121	152	98	120	125	140	112
CGGGCTCCAGATAATT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CGTATCCTTGTATTTG	ref_2582_upstream	17	27	26	13	10	15	17	12	22	15
TATTAGGGTTCCTTAT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGAACAGCACGC	ref_2582_upstream	54	67	71	68	67	53	75	48	61	42
TTCCTATTTGCGTCTC	ref_2582_upstream	9	14	10	13	12	16	19	7	15	6
CACCCCCATGCCTTCT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CGTAGCCGCGTGAATC	ref_2582_upstream	29	34	35	32	33	32	53	29	48	35
ACGTGAATAGAGTCAA	ref_2582_upstream	11	18	32	18	23	13	36	20	20	23
GTACGAGAGAATATTG	ref_2582_upstream	10	13	13	12	14	14	14	18	15	10
GCCGGTCACCGTAATA	ref_2582_upstream	15	18	21	20	25	12	18	12	26	14
TTAGTAGGTATTCACC	ref_2582_upstream	8	4	6	9	10	6	23	5	8	8
AAAGACGCTATAGAGA	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
AAGATGACAAGTCACT	ref_2582_upstream	160	187	248	167	219	184	219	145	222	146
GGCGTCCCTAGGTTAC	ref_2582_upstream	15	28	20	14	24	15	32	11	20	11
ACTCGTGATCTTTTTT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTCTGGCCCGTT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
GATATTTGTCCCGGAT	ref_2582_upstream	3	2	13	3	7	4	4	6	5	5
TGGGCGTGTGATTCTC	ref_2582_upstream	12	10	6	10	8	7	5	9	12	6
GTCCGCAGACTCGCCA	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGTATCGGCGTTGATC	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAGCGCCATTTGT	ref_2582_upstream	12	20	9	13	5	9	8	8	9	6
GGTATCCAAAGGGACC	ref_2582_upstream	235	305	293	287	307	237	329	215	280	236
AATAAGCACAGGCTCT	ref_2582_upstream	51	38	58	70	63	52	56	61	61	46
CTCTCTATATTCGGAT	ref_2582_upstream	16	16	15	20	23	18	17	25	21	13
ACTTTAATTAAGAACG	ref_2582_upstream	44	34	43	41	35	42	31	31	46	29
TAAAAATGGCATTCAC	ref_2582_upstream	7	8	16	15	5	12	12	11	5	11
TGACTATGGTCCATCA	ref_2582_upstream	54	106	90	85	103	66	77	68	87	60
GTCATCAAGAAGGTTG	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
GGGGAGTTTTCCCGAT	ref_2582_upstream	50	60	64	49	75	44	76	53	58	58
CTTTTGTACTACGCGC	ref_2582_upstream	23	33	39	30	33	26	35	30	39	29
ATCGAAGCGGCGCATC	ref_2582_upstream	14	13	16	10	5	8	10	12	15	12
GGTATTTGGTCTAATT	ref_2582_upstream	40	42	27	41	47	45	42	24	39	32
ACATCGTCTTTTTTTC	ref_2582_upstream	6	4	3	12	6	8	7	2	8	4
CGTTCTTGTAGGCTCG	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CGATCGCACTTAAGTC	ref_2582_upstream	7	20	21	15	29	6	24	11	24	19
CAAGAGGAACCCACAC	ref_2582_upstream	20	33	21	26	41	15	29	15	27	20
TTGTGCATCGCTCACG	ref_2582_upstream	13	14	15	9	11	9	26	9	20	5
CGTATTGACACTCCCT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCAGCAGTTTGTC	ref_2582_upstream	12	12	12	10	6	6	20	5	12	7
CCTGGCCCTGGTTAAT	ref_2582_upstream	33	35	32	29	26	36	31	28	20	26
TGGCCCCCCATAGTTG	ref_2582_upstream	45	28	55	33	52	28	31	36	37	36
ACGGTGTAGTTTATGC	ref_2582_upstream	7	4	6	2	6	1	3	4	2	3
CTATGTTTAACGATTC	ref_2582_upstream	30	41	38	45	55	37	53	38	56	27
CAATTAGTATCGGGTT	ref_2582_upstream	7	4	10	6	9	11	5	8	11	9
CTGGGCCCTCTCGTTA	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCGCGGCAAAGAG	alt_2582_upstream	54	54	47	46	45	37	63	40	66	36
CCCTCTTTTCAGCCGG	ref_2582_upstream	33	32	50	30	36	34	27	29	31	22
TCGTAAATATAGGCCT	ref_2582_upstream	0	1	1	1	0	1	1	1	0	0
ATGCCCAACCTGGCCT	ref_2582_upstream	5	25	15	14	20	14	15	18	17	4
GCTAATTCTCCAGTGA	ref_2582_upstream	25	16	24	9	19	24	32	22	29	24
TCGCGCAAATTATCCC	ref_2582_upstream	17	25	23	15	42	24	17	23	26	20
CCCTTTGTGTTCATAT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTTGGCGTTGCTC	ref_2582_upstream	49	66	78	62	68	48	74	47	52	63
CTCACTTTTCCTCAAG	ref_2582_upstream	21	19	9	21	16	20	17	9	16	17
ACCCGGTTGCGTCCGG	ref_2582_upstream	9	19	9	16	18	12	15	8	16	12
TATAGTGCAAAGATCT	ref_2582_upstream	12	23	32	17	21	13	18	18	17	11
ATGAAGATTTCACATC	ref_2582_upstream	19	35	31	26	32	20	25	36	31	28
CAGAACTTACCTTCAT	ref_2582_upstream	1	17	3	0	14	0	14	1	24	0
TAAGTTAGGTGATGAG	ref_2582_upstream	96	113	107	101	101	96	117	80	122	87
GCTAGTTGCTGATATT	ref_2582_upstream	6	5	9	9	8	8	11	1	8	4
ACAATATTTTCTTGCT	ref_2582_upstream	18	9	10	17	10	17	15	10	9	14
TCTGACTATGGTCCGT	ref_2582_upstream	29	46	50	36	36	32	52	53	38	32
TCCCCATGTAATCAGG	ref_2582_upstream	10	49	10	5	50	6	69	5	52	8
GGCAACCTCCGGATGT	ref_2582_upstream	3	15	6	4	9	2	13	9	7	7
ACAACTTGCGCAACGG	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CGGGATACGTAGCCTT	ref_2582_upstream	3	8	8	5	4	4	4	3	7	1
TTGCTTTGCCGATCCG	ref_2582_upstream	71	72	67	51	75	68	81	51	87	47
GCATGGTTCTCGTTAG	ref_2582_upstream	20	27	28	25	35	22	23	31	30	24
CTGCCTGGTAATTCCA	ref_2582_upstream	2	2	4	5	7	3	4	1	4	3
TTTTGTAAATAGAGTG	ref_2582_upstream	21	21	27	22	39	20	21	24	33	12
CAGGCTTAAGAAGAAT	ref_2582_upstream	37	49	40	44	44	41	49	54	56	25
CGAGAGCCATAGATCT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
GCCGCTTACTTCTCGT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCTCGAGCATGCA	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTCTCGGTTGGTC	alt_2582_upstream	0	1	4	5	2	4	2	0	6	2
CCTCCGCGGCGAGGGC	ref_2582_upstream	10	27	7	8	10	13	11	10	13	5
GAAAGTGAAGGAGTGA	ref_2582_upstream	40	47	48	43	51	31	39	38	49	45
TCGTCTTATCTCTTAA	ref_2582_upstream	11	4	4	4	8	2	7	6	2	4
TCCTCCTGCGACACTA	ref_2582_upstream	4	5	3	2	10	4	6	2	10	2
ATAGATTGGGGTTTAA	ref_2582_upstream	13	17	13	14	22	16	14	8	20	12
GCTTTTTGGATTCCTC	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
GGATGTATCCTTCTCA	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCTCGGAGTTCTC	ref_2582_upstream	16	27	17	21	23	18	22	20	26	15
GGTGTAACACTCAAGT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
TACTTTCACCCCGGCC	ref_2582_upstream	10	10	9	5	11	10	13	9	16	12
ATACTGCATATTTCGG	ref_2582_upstream	46	63	73	51	50	40	67	42	84	50
GGCTTTCCCGTACCTG	ref_2582_upstream	21	16	17	21	15	16	26	21	24	12
CTCTTGCCCGTTTCGA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
AACTCACGGCTAAATT	ref_2582_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTTATTATTTACA	ref_2582_upstream	13	14	20	15	18	15	28	7	18	8
GATCGGGTGCGATCAT	ref_2582_upstream	66	52	60	78	53	48	77	65	64	47
TTTTGGATTCAGGAGG	ref_2582_upstream	13	26	20	14	18	25	23	15	27	12
GCGGTCGTGTCACTCT	alt_2618_RC	103	41	115	93	63	84	40	71	36	88
GCGCACTTGTATGGGT	alt_2618_RC	49	26	62	47	32	68	31	48	35	51
GGGATTCTCGTCTAGG	alt_2618_RC	109	78	109	100	67	94	71	98	76	95
AAATTGCTGCTTACTT	alt_2618_RC	60	36	82	68	52	65	35	71	38	51
CAACGGGCGCTCTTCA	alt_2618_RC	41	22	51	51	22	30	41	50	25	42
GGTGTACCGTTGTGTT	alt_2618_RC	133	59	150	108	67	125	73	117	58	83
TAGAAGGCTTTGGCTT	alt_2618_RC	56	22	46	51	26	35	19	41	28	38
ATGAACAACTCAATTG	alt_2618_RC	7	2	0	4	0	2	4	6	1	4
CATAAGGAATTACCGT	alt_2618_RC	130	69	138	129	84	137	71	124	74	129
AATGGCTGTGGGAATT	alt_2618_RC	33	16	57	47	20	26	17	33	13	20
TACCGACCAAATGCCT	alt_2618_RC	44	18	47	32	29	36	28	32	26	25
AAAGATTGGGGTTCCT	alt_2618_RC	53	22	60	50	22	55	43	40	35	47
TCCAGTAGGCGATATG	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CAGAACCAACGGCTGT	alt_2618_RC	70	38	93	90	44	63	32	66	44	46
CAATGTACCAATCGCA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ATATTGATCGGTAAAC	alt_2618_RC	438	248	516	533	230	407	205	449	257	382
CAGCAATATACTTTCG	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ATGAGTCCTACACGGG	alt_2618_RC	16	14	14	21	4	22	8	16	7	20
CATATGATTTGTATGT	alt_2618_RC	106	54	114	73	49	80	47	76	38	76
CGACCTTCTCGACGTT	alt_2618_RC	133	86	183	124	120	138	113	125	114	116
TATTTTTTTACGGGTC	alt_2618_RC	263	155	314	298	172	252	173	271	137	240
TGGACAGTCTACCCAA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ACACCGGCAATTATTA	alt_2618_RC	28	10	34	19	14	27	12	15	15	19
CTTATTGCTGTCATCC	alt_2618_RC	26	14	37	23	17	15	28	22	24	21
TTACAGTGAATAGGTG	alt_2618_RC	119	64	154	124	88	124	64	111	79	105
GTCGCCCGATAGGCGC	alt_2618_RC	22	22	39	48	23	42	23	17	25	30
GGTTATACCAGCATCT	alt_2618_RC	108	59	115	95	44	105	70	87	73	82
AGGGCAACAATGCGTA	alt_2618_RC	42	22	63	53	24	31	33	43	28	35
TTGGTTATCCAGTCGT	alt_2618_RC	62	27	63	52	32	60	29	65	41	64
GGCACCTCCGTTTTTG	alt_2618_RC	121	48	169	131	49	138	69	118	70	106
CCCGTCAAAGTTAATG	alt_2618_RC	46	27	48	49	36	44	30	39	49	46
CATTTGTTTTGTTTCC	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CTGATATGATCAACTT	alt_2618_RC	65	31	76	80	34	61	33	58	38	60
TGACGCCTTTATCCTA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CAACCAATACGGATTG	alt_2618_RC	67	70	77	83	66	54	63	67	56	66
TTGCGAATTACATCGG	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ATATACAACTTCCGTA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGTCACTTGTTA	ref_2618_RC	190	106	270	190	103	194	113	182	111	161
GTTAGACTAGCTCCGG	alt_2618_RC	53	24	86	69	37	46	33	52	48	62
GGGTAGTATGAGATAA	alt_2618_RC	53	24	68	55	19	42	24	31	35	48
TGACCGTGGCGATTCA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CGGGCGGGAGTTATAC	alt_2618_RC	56	34	70	50	28	56	36	56	45	55
ATTTGCTCCAAGCAAT	alt_2618_RC	28	11	35	40	28	34	26	31	26	30
CGTGCAGGTTTACGAA	alt_2618_RC	33	23	40	50	17	35	22	36	35	44
CGGGCAAGAAGAAGGT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TTGGTGTGACGGTACT	alt_2618_RC	192	123	221	256	117	202	110	197	116	175
GAGCTAACTGGGCCCC	ref_2618_RC	39	24	69	44	17	58	23	42	14	45
CATGTGCCTTCTGGTT	alt_2618_RC	25	14	36	25	10	23	8	29	15	29
GCTGGCCAGCCCCTTT	alt_2618_RC	49	39	76	58	55	58	43	62	55	62
GGTATATTGTCTGTTG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GATAAAGAATGTGGTA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TCCTAGTCGACCGCCT	alt_2618_RC	38	49	58	46	49	40	66	58	57	53
TTGAAAGTACTTTTGG	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CTTTACAAAGTTACTT	alt_2618_RC	63	33	90	56	32	53	34	66	37	65
TTTCCTACCGGGAAGG	alt_2618_RC	20	8	23	9	5	9	18	11	11	10
TTTCATATCGGATCAT	alt_2618_RC	228	123	282	266	132	198	118	251	113	194
GCCATTTACATTAAGT	alt_2618_RC	137	75	166	122	73	103	62	126	54	94
CTGTACCGAATATGGG	alt_2618_RC	18	7	22	21	18	22	9	24	7	25
TCTTCTATGCAGCTAT	alt_2618_RC	57	48	59	43	51	54	44	46	45	48
CTCTCTACGCTAGGGG	alt_2618_RC	28	15	19	21	14	35	15	21	14	20
TCCCTGTCTACGTTTT	alt_2618_RC	14	51	17	6	59	16	59	9	64	18
ACCTGGTATTTCCGGT	alt_2618_RC	138	85	159	150	80	120	67	121	76	141
GGGCCATCAATGGAAG	alt_2618_RC	0	0	0	0	0	0	0	0	1	0
TCTTGAAGTGTGTAGC	alt_2618_RC	12	5	23	11	8	14	10	10	7	15
CCCTTATCGAAAGTCG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TCAGTCAATTGCCATG	alt_2618_RC	108	71	100	120	73	80	68	76	66	88
TAGAGGCAGAACAAGA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CCCTATGTATCTTACC	alt_2618_RC	11	15	12	11	14	10	15	7	17	9
GCCCCGTTCAACTTTA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
GGCCTGGGTGCTTCAA	alt_2618_RC	51	26	70	54	41	53	33	53	28	42
GTATAGTAAGATTTAA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CATGTCAACCCAGCTG	alt_2618_RC	107	63	131	106	56	83	54	80	68	74
TATACCATTCTACCCG	ref_2618_RC	56	41	71	73	48	62	46	84	38	52
AGCGGCAAAGGTCTTG	alt_2618_RC	54	23	62	51	37	63	46	54	26	60
GCGAATCTTGCTGTTA	alt_2618_RC	123	53	149	140	71	117	71	119	56	131
TTGCCGTTGGTCGTGG	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TCGTGTTTTCAACGGT	alt_2618_RC	111	41	134	120	66	99	48	94	68	89
GTATTATAATGCACCC	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TTGATTGTGTCTGCTT	alt_2618_RC	204	98	227	174	103	194	104	160	99	150
TGCGGGGCAATATGCG	ref_2618_RC	175	80	204	186	60	166	103	145	111	134
CTGGTAATATATAAAA	alt_2618_RC	62	23	48	35	37	39	32	46	23	37
TGTACCACATCGGCCA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TCTGCGATAATTTTTC	ref_2618_RC	41	29	53	66	38	55	20	58	30	50
TAATGCCTCAGTCCAT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
GATCCGACCGCTGGAT	alt_2618_RC	20	11	28	27	14	24	19	31	16	25
GCCACTTTTACGTTAG	alt_2618_RC	144	117	212	185	124	173	123	176	119	143
GTGCCAGGGATGTCTA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CCAGCGGGCTCAATTT	alt_2618_RC	136	58	128	141	85	124	79	124	69	118
TTAACGCTCTCAAAGC	alt_2618_RC	150	74	183	164	91	131	81	137	82	142
AGCCACGATTATTTCG	alt_2618_RC	54	53	73	85	56	63	63	77	52	59
AGAAGTACTATGTTCG	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TGCCCGCGATGAGACC	alt_2618_RC	106	64	125	95	87	98	73	90	47	102
AGCTCGTCCTTGGGAT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
GAGCACCTGGTGTTCA	alt_2618_RC	30	28	43	39	15	18	19	16	23	27
GCTCTCACTCAAGCGA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CCTTCATGTCCGGTTG	alt_2618_RC	189	77	190	174	101	179	101	157	81	131
GATTTCCGTACCACGC	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TTTCCACACCGTCTCT	alt_2618_RC	17	6	18	23	13	13	13	13	15	10
TGATATTATTCGCTTT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGTGATGACTCG	alt_2618_RC	232	139	259	251	125	233	105	214	179	221
GGATGTTAGAGTTCTG	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CACTAACTTCCATACC	alt_2618_RC	7	20	5	4	13	13	13	7	11	10
TTGGCCTTCGCCTACT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ATAGAGCGTTTACAAG	alt_2618_RC	14	12	13	8	2	7	7	13	4	10
TCGTGTGAGTCTCCAT	alt_2618_RC	75	46	105	96	28	86	31	85	32	82
CCCGTGTTGGAGAGCA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TTCAGTAAGAGGCTGC	alt_2618_RC	63	30	81	72	32	52	45	50	53	54
TCGTGTTGACCTGCTT	alt_2618_RC	48	19	53	51	18	52	29	49	25	45
TACGATGCCTTAGAAT	alt_2618_RC	131	82	202	132	89	143	84	128	75	134
GCATCGGTAGCGGTCT	alt_2618_RC	6	3	9	11	2	9	4	14	7	13
ATAGTGTTTACAGTTC	alt_2618_RC	12	5	10	12	15	8	6	20	10	10
ACCAGAAGGTTGGGGC	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
GCGGCTATTGTAGTTA	alt_2618_RC	51	32	54	42	44	42	32	46	35	36
AGTTGGGCAAGTCGGA	alt_2618_RC	67	42	94	82	37	73	52	83	50	65
CAGTTCAGTCGCGTGC	alt_2618_RC	76	94	78	93	89	77	101	77	109	59
CTACGCTTGGCCTCCA	alt_2618_RC	269	118	309	301	145	238	136	220	161	267
TAACTGTTGTTTGTCT	alt_2618_RC	237	105	280	290	102	259	141	270	120	252
CAACCCGCCTGTCTAA	alt_2618_RC	49	53	60	67	30	76	60	64	52	66
AAACCGATGGTCGACT	alt_2618_RC	55	16	52	48	32	36	18	44	28	53
TCTATCCGAGTGGCTC	alt_2618_RC	13	9	13	14	6	10	4	10	5	13
GCAATTACGATCCATG	alt_2618_RC	122	100	147	126	76	95	87	98	102	131
TTCTTGGCGATACCTA	alt_2618_RC	213	105	262	204	115	209	121	195	112	198
TACAGGTGGTAGCGCC	alt_2618_RC	23	11	14	16	4	13	9	15	8	12
TCGTGTTTATTGCCAA	alt_2618_RC	74	35	95	83	43	62	45	70	48	66
TAGTTAAGCAAATGCT	alt_2618_RC	37	23	47	45	27	23	29	31	14	37
GGGAGCGCCCCACGAA	alt_2618_RC	40	22	44	43	17	37	26	45	11	38
GTGGGCGATTTGTTTT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
CACTTCATCGGAGTTG	alt_2618_RC	129	52	128	162	56	99	68	111	58	109
GTTTGGTTACGAATTG	alt_2618_RC	31	20	46	29	13	28	10	25	27	36
GCACGGCTTTGCTGGC	alt_2618_RC	45	20	55	46	19	37	21	38	32	33
TATCATCTCGTGAGGT	alt_2618_RC	135	67	138	127	88	108	81	104	53	135
TCTAAAGAATTAGATT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
ATAACGTATCGTAGAA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TGTTACTTTAATTTTT	ref_2618_RC	103	63	122	121	73	101	60	104	56	82
CCAGTCACTGTTAAGA	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTCTATTTAATG	alt_2618_RC	45	21	54	47	31	58	42	46	31	42
GTATCATGGACGTTTC	alt_2618_RC	0	0	0	0	0	0	0	0	2	0
ACTGACTCTTATTTCC	alt_2618_RC	17	12	33	14	12	22	6	18	8	22
ACACCTCTCGGTTTGA	ref_2618_RC	238	130	277	249	127	208	149	235	139	243
GCCTGCTGTCTGACCA	alt_2618_RC	6	4	16	13	8	7	6	13	6	15
CAACATGTTCGCGATA	alt_2618_RC	43	26	49	51	26	60	33	50	27	48
GTAAGAAGTACAAATA	alt_2618_RC	1	4	2	5	7	8	2	6	1	6
TGCGCTGAACTGACGT	alt_2618_RC	140	78	172	170	94	148	90	156	98	137
ATGTCTAACCTACCCA	alt_2618_RC	664	373	758	660	423	647	443	646	438	646
TCGCGTTAGTTATTTT	alt_2618_RC	0	0	0	0	0	0	0	0	0	0
TCTGTGTATTCGGTCT	alt_2618_RC	48	21	54	36	19	30	23	31	19	35
TCAGTGGGTCGTGCCT	alt_2618_RC	74	28	90	52	11	51	19	74	21	59
CTTCTATATTTACCAC	alt_2618_RC	355	172	448	346	215	316	237	344	203	342
TATCTGGTAAGCGCCG	alt_2618_RC	50	28	47	48	25	36	29	40	22	40
TTCTTGGTCACGCGCT	alt_2618_RC	74	22	83	53	17	65	27	63	21	50
GCGCCGGGTAGACTCT	alt_2618_RC	18	13	11	15	8	8	18	8	12	5
CCTCATGGCATCTGGG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TTACACAGCCGGTCGA	ref_5486_fdr	16	40	17	18	15	14	14	7	33	14
ATCTAGCACAGATTCT	alt_6095_new	36	35	43	25	24	21	36	37	39	22
TAATAAATTCTCCCAT	alt_6095_new	4	2	5	7	3	6	4	4	3	6
TCAGCATCTCATCATT	alt_6095_new	35	45	51	36	45	40	44	31	42	36
CGCTCTAGAGACAATA	alt_6095_new	0	0	0	0	0	0	0	0	0	0
ACACATAAGAGAAACC	alt_6095_new	45	46	45	45	49	41	51	30	51	31
ACTGGTCTGATCAGTA	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TCAATCACGGGCGTTG	alt_6095_new	0	0	0	0	0	0	0	0	0	0
ACGCTCTCTACTGGCT	alt_6095_new	19	13	14	11	11	11	4	11	15	10
AAAGCGTACTTTTTAC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
ACGGTATTCACTGGAG	alt_6095_new	10	6	9	9	5	9	9	6	12	9
CAGCAAAGGTCTATTA	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GTATGTCTACTACTCC	alt_6095_new	11	9	8	8	10	4	12	3	17	3
CGCAATCCCCTTTCTT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TTAAGTGTGTTCTTTC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GCTTTGATGGAACTCT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TTCTTTGTGCCTAGGA	alt_6095_new	4	9	3	7	7	5	8	9	8	7
TTGCGTCCGTAATCGT	alt_6095_new	24	59	41	36	42	39	49	26	45	37
ACCTATTTGTTGCGGA	alt_6095_new	18	28	19	21	53	20	42	20	56	13
CTGGTGTAACCGAGTG	alt_6095_new	13	11	20	12	13	18	15	7	14	8
TCGCAGGGGTAAGGGC	alt_6095_new	39	40	57	37	34	31	48	34	55	43
GACGTTATCGCTTAGC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
CGCCTTAGAGTTACCT	alt_6095_new	67	84	93	70	104	67	83	72	103	64
CCTTCGGGTTAGCATG	alt_6095_new	2	8	3	1	4	1	2	2	7	2
CGGCTTATTGGCCTCG	alt_6095_new	2	2	1	4	5	4	5	1	4	4
AGTATAGTCGCTGACT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GATATAACGCCTATAC	alt_6095_new	19	16	16	13	11	16	8	14	14	20
GCGGTTAAGCCTATTA	alt_6095_new	106	128	123	102	149	119	150	98	154	111
GTATGTTATCTGCATC	alt_6095_new	15	14	22	20	12	8	22	11	14	10
CATTCGTTACGCCGAA	alt_6095_new	18	17	19	20	14	8	16	7	15	13
TTAAGGCCCGTGGTTA	alt_6095_new	24	41	34	22	38	43	34	25	47	18
GTCAATCTGTGGATCG	alt_6095_new	7	5	13	7	9	6	3	4	12	2
GCTAGTTCTGTCTGTC	alt_6095_new	29	46	38	35	45	41	49	29	64	29
TCCGTATAATCAGTGG	alt_6095_new	34	45	50	33	47	35	46	23	51	27
TGGTGTCAAAGTCGCA	alt_6095_new	0	0	0	0	0	0	0	0	0	0
AAAGCTGGCTTCATTC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TGCTTGAATAGTAGTG	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GTGTCGCCCATTCTAT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
ATATTTGTTCAGCAAC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GATATAAGTTCAAGTG	alt_6095_new	17	17	15	21	21	22	27	13	25	21
ACACCGCCCGTAGTAC	alt_6095_new	10	50	2	9	52	6	35	5	52	12
TAACTAATCGCTAGTT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GCTTCCGCTCTAACAT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GTCTTAGTACGGGCTT	alt_6095_new	15	8	4	7	3	6	15	2	7	10
TCATCGGTCTAGGGAT	alt_6095_new	2	2	2	4	5	1	1	0	2	2
GTTTATCTAGCCACCC	alt_6095_new	23	25	20	25	8	11	13	13	27	27
GGATCCGGTGCCCCAT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TCGTTAAACCCGTCCG	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TGTCGTCAAGTCAACG	alt_6095_new	0	0	0	0	0	0	0	0	0	0
ACGTGAGCCTCTTCAT	alt_6095_new	15	25	28	11	24	18	21	25	24	18
TATGTATTCATTAATG	alt_6095_new	0	0	0	0	0	0	0	0	0	0
CACCTCCGCGACGATT	alt_6095_new	12	21	23	16	23	12	34	13	47	18
CCAGCTCTCTGTTATA	alt_6095_new	0	0	0	0	0	0	0	0	0	0
ACCCAGCGTTTGAAGT	alt_6095_new	22	41	31	28	15	25	28	25	38	27
CGAAGACCTTATTTAT	alt_6095_new	79	91	123	84	88	95	100	78	81	82
TCAGACTCAACTTTCT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GCTTCCCTCTGCCCCC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
ATTATAATGCCGGGGG	alt_6095_new	4	7	10	7	9	9	5	10	5	7
GGCGAGCGTTGTGAAT	alt_6095_new	9	6	10	8	9	2	8	6	5	7
GTGCGCACTGTGATCC	alt_6095_new	9	10	3	4	13	6	10	1	10	3
GTTGGCGGAAACCTGT	alt_6095_new	90	115	146	117	128	103	153	98	146	115
ACTAGTTGTGGAGGTT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
CCCTGGAGTATCTCAT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GCCTTAATGGATTTTA	alt_6095_new	1	0	1	0	0	2	0	3	1	0
TCTCTTGAGACCGCCA	alt_6095_new	14	7	4	6	7	5	8	4	4	5
TGATCTACAAGTCATC	alt_6095_new	0	3	0	0	1	0	1	3	1	1
GGTTGCCAACAGAGAA	alt_6095_new	22	15	20	28	20	16	17	17	12	16
CCCTTTTGCCGGGAAC	alt_6095_new	22	46	30	34	47	35	43	24	48	35
TTATCTCAGGGTTTCC	alt_6095_new	25	31	31	23	29	22	45	26	32	33
GGCAGAGTGACTGGCG	alt_6095_new	31	47	39	33	35	31	38	40	47	22
AAGGCCCAACTGCTGT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GCGGCCGGGTCCTGGT	alt_6095_new	7	12	13	4	5	6	8	12	14	11
AATATTCCTTCTTTTC	alt_6095_new	12	15	14	18	22	17	13	16	11	11
AACGGTCTGATTATTT	alt_6095_new	67	74	69	59	83	46	76	51	86	54
ATTGTCAATCAGTGGG	alt_6095_new	3	1	1	0	0	1	1	1	2	1
GCAGTTTTTTTGCTTA	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TATCGCAAGGTCGTTC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
AACGCTTTCAACGTTG	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GTTTACATCAAATTCG	alt_6095_new	12	9	7	7	10	4	5	7	3	4
ATTTAAAAAATGTGCT	alt_6095_new	31	32	35	39	39	31	38	28	43	33
TTAGTGAATTTGAGCC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
CTGTCGATATGTGAGG	alt_6095_new	12	15	7	6	17	7	10	9	14	5
GGAGCGAAAGATTGCC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
CCGCGCTCATTAGAGC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
TTTTTGATGTTTAAGC	alt_6095_new	26	26	21	23	22	23	32	27	27	21
TTACAGCTCCCTCATG	ref_6095_new	11	15	13	5	19	5	16	6	20	5
GTTTTAGTGGCCGTAG	alt_6095_new	13	10	11	16	13	11	13	13	12	6
TTAACTAGGATGCCTC	alt_6095_new	3	15	9	7	18	11	8	9	11	7
GTTTAGGATCGTCTTG	alt_6095_new	2	3	4	2	3	1	2	4	4	0
TGTTCCGTTGGATTGC	alt_6095_new	21	24	16	8	14	16	11	17	15	9
TCGGCTGCTCCAGCGG	alt_6095_new	12	23	20	18	16	13	12	17	25	8
CGAAATCCCATGTCAT	alt_6095_new	15	13	19	7	21	15	19	1	7	14
TATATTATATTCCCTG	alt_6095_new	11	8	12	21	12	9	16	8	13	8
ATGGTTTGGTCCTGGT	alt_6095_new	50	51	62	71	70	61	94	45	63	53
CTTCGATTACCGTCGC	alt_6095_new	21	39	42	32	46	29	32	25	31	34
TTATTGGAGGGGTCGC	alt_6095_new	0	0	0	0	0	0	0	0	0	0
AACCACACTTAGGATA	alt_6095_new	25	32	44	33	29	31	26	19	49	25
ATGATGTAATAACTGG	alt_6095_new	5	4	3	3	4	2	9	4	10	2
TGGTAATCTGAAAAGT	alt_6095_new	12	10	8	8	10	9	7	9	5	14
GATGGGAATCAGGCCA	alt_6095_new	24	43	54	44	31	33	31	30	26	33
ACACCTTTGGTCAACA	alt_6095_new	5	6	4	3	6	7	7	5	15	10
AGCTCGGCTCAGGCGA	alt_6095_new	0	0	0	0	0	0	0	0	0	0
CTTCTCTAACTGCGCG	alt_6095_new	112	139	148	108	150	94	146	113	110	108
AAGGGACTAGCGCAGC	alt_6095_new	19	12	17	9	21	15	10	11	16	6
ATGGACTCCTCAGTCA	alt_6095_new	55	33	64	41	47	41	51	33	37	38
CAGCAAGTCGATACAT	alt_6095_new	20	25	20	30	19	28	23	22	31	14
CCACGGCGAATGCGGA	alt_6095_new	11	14	11	18	16	12	18	9	14	19
ACACGTACCTACATCA	alt_6095_new	36	68	66	43	68	40	72	37	48	54
ATGTCAGGCCTCTGTG	alt_6095_new	0	0	0	0	0	0	0	0	0	0
GATTGGAGCGTGAATC	alt_6095_new	12	11	14	14	19	10	23	17	17	10
GTTCAGCTGCGGCCTA	alt_6095_new	23	23	30	27	22	22	16	25	24	15
CAACCTTGCTCGCGGG	alt_6095_new	6	10	9	13	19	10	14	3	18	4
TATTGATGCTCTCAAT	alt_6095_new	0	0	0	0	0	0	0	0	0	0
CTCCTGAGTTGTCTTA	alt_6095_new	29	20	27	30	35	28	39	20	50	20
TTTGATCTAATGTTTC	alt_6095_new	30	38	36	31	26	31	31	39	40	27
GTAGCTTACTGTCGGC	alt_6095_new	12	16	14	24	16	17	14	15	40	19
ATGTTGGTGATGGCTC	alt_6095_new	7	5	11	15	7	11	6	9	17	9
ATCCTTGATCTACTAC	alt_6095_new	0	2	0	0	0	0	0	0	1	0
TTCAATCTATTACTCT	alt_6095_new	21	10	15	11	16	12	16	20	25	10
GTACTCGGACCGTGGG	alt_6095_new	28	38	40	32	50	26	43	22	35	37
TACGTTAGTGGGAAAG	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
ATGACCACTATCTTTT	alt_396_upstream	26	11	28	20	22	32	20	13	22	19
CTCATTAGGTTCCATT	alt_396_upstream	30	56	44	42	43	42	53	49	58	37
GTATTACGCTCACCCA	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGGTAACATCGC	alt_396_upstream	53	36	39	34	40	44	41	42	50	34
CAGTTGCCTTAAGTTA	alt_396_upstream	15	32	19	18	31	12	45	22	34	12
GCTACTTCAGCTTTTA	alt_396_upstream	45	70	77	68	86	59	91	74	82	68
TTCCGAATTATCGCCG	alt_396_upstream	42	18	36	27	26	21	21	28	43	26
TACATTTATCGAAGAC	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
TCCTATCCTAGTTCTT	alt_396_upstream	2	7	4	4	4	1	2	1	4	3
AAGCGTATCCTTTTGG	alt_396_upstream	83	35	57	45	57	40	45	48	60	48
GTTTTTAACAATGTAA	alt_396_upstream	24	34	24	22	28	31	20	17	25	14
CGTCTCGTTATCATTT	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTGTGAGGCCCTT	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
ACAATCGATTTGCCTT	alt_396_upstream	20	14	21	10	26	11	23	21	24	18
TAGATTTGGAAGCTCT	alt_396_upstream	47	36	40	40	32	27	28	37	32	16
GAGAGTTTTCCACCTT	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCGTGGTCCTCTA	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
CGCATTGACCTCGTTT	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
TTTCATAACGTAGCGT	alt_396_upstream	3	1	11	6	5	5	7	5	6	8
ACTGCAAGCCTCTCAT	alt_396_upstream	2	1	3	0	1	3	2	3	3	2
TCACTCGCTCGATATC	alt_396_upstream	26	19	33	32	24	31	29	32	30	25
GGTTACGTACAGAGTG	alt_396_upstream	7	10	10	7	8	6	3	8	6	11
GTATTTCGCTCACCCA	alt_396_upstream	260	272	312	289	263	277	222	282	235	256
GCTCGTGTCTAGGGTG	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
AGAGTGTGGTAGGAAT	alt_396_upstream	139	151	180	141	171	148	154	142	190	136
ATTCTATGGAGAACGT	alt_396_upstream	31	34	43	42	28	37	25	28	21	33
GATACCCATCTTGGGG	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
TCGAATTTGACAACAT	alt_396_upstream	7	7	10	6	8	13	10	7	9	6
GCAGTGGTACTCGGAC	alt_396_upstream	14	21	16	11	19	18	24	10	16	6
CGTAACGCCTCATGCA	alt_396_upstream	13	50	16	21	27	11	37	8	39	12
TGTTGTTCACGTGCGA	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGTGTTCAATTTC	alt_396_upstream	48	43	51	46	29	35	36	46	49	44
TTGGTCATTGCATACG	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGTATGTGGGGCC	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
GCCACTAGCGGTCAGT	alt_396_upstream	18	21	20	14	21	22	18	19	25	18
TGGTGTATTTAATGGT	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
CACCATCGCGCCAGCA	alt_396_upstream	50	33	45	33	35	41	44	27	47	28
GTAGATGCTTTCGAGT	alt_396_upstream	96	61	110	82	69	82	78	71	69	73
TCAATATTTCTGTTTT	alt_396_upstream	36	29	45	35	22	29	18	38	24	29
TGCGACTACCGATTTT	alt_396_upstream	82	95	86	67	80	69	88	81	99	66
GTCCGGCCCCTTATAT	alt_396_upstream	46	50	53	43	56	39	56	46	43	46
CCTCCTCCCCGCAGAA	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGCACGTTACATG	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
CGGAAATACAAGGGGT	alt_396_upstream	18	20	25	15	10	10	27	12	11	23
CAAGGACAGTTCTAAG	alt_396_upstream	13	15	19	20	18	12	18	12	20	14
TTTTTGCTGGATGTGT	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCAATGCTGGTC	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCTGCGCTTAAAG	alt_396_upstream	7	4	4	8	7	6	8	9	9	5
ATGAAGCGCCGCGGTA	alt_396_upstream	127	148	162	116	129	144	128	119	149	124
GCTCCCGCGTTAACCA	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCTGCCGTCATTG	alt_396_upstream	54	37	54	40	40	41	42	31	46	29
CCCGTGGTGGCTCTAC	alt_396_upstream	6	7	6	3	12	4	7	4	8	5
CTATGTCCCTGCGCCA	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
GATTCATCCCCGGCGC	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
AATTATGGTGACATCA	alt_396_upstream	39	24	43	48	34	56	33	36	28	40
GAGGATAGATGTTCGC	alt_396_upstream	33	31	27	38	47	34	53	38	32	19
GCAAGTGATGCCATAC	alt_396_upstream	36	35	42	42	38	25	44	30	42	34
TCCGTTACTTAGTACA	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCAGCGGCGGTGG	alt_396_upstream	28	26	37	32	53	41	30	31	34	25
GTTTCGAAAGTTTTTG	alt_396_upstream	16	27	27	24	28	18	21	17	17	17
CGCTATAACGGCTTGA	alt_396_upstream	15	14	21	23	4	11	14	14	9	7
AATTATAGTGCGTACC	alt_396_upstream	0	0	0	0	0	0	0	0	0	0
TACCTCTTTTTGGATA	alt_396_upstream	106	118	127	97	132	92	125	126	147	105
CGCCTCTCTAAGCTAG	alt_396_upstream	108	124	130	136	138	112	130	91	153	113
TAGCACCCTGACTTGC	ref_3643_reverse	1	9	7	4	9	2	7	6	10	2
TTAAGGTCCGTGGTTT	ref_3643_reverse	2	1	2	2	2	0	4	0	2	0
GCACATCATGATCAAA	ref_3643_reverse	7	10	2	9	2	4	2	2	12	4
ATAATAGTACTATTAC	ref_3643_reverse	1	1	0	0	1	2	4	1	3	0
GACAGCGTAGTTCGAT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTCTTTATCTACC	ref_3643_reverse	7	18	8	1	23	7	30	15	24	6
CCTAACGCCACCGTCT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGGATCAGTTCCT	ref_3643_reverse	23	34	21	17	28	26	35	10	54	21
GTTGACGCGCATGTGT	ref_3643_reverse	2	4	6	4	10	3	9	4	15	4
TTCCTCTCTGATATCT	ref_3643_reverse	0	4	4	1	2	1	2	0	3	1
GAGTCTGGGCTCATAC	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
CTCAATACACGCTTCG	ref_3643_reverse	27	41	33	24	66	26	47	16	50	18
CGATCGAGTCCGTAAG	ref_3643_reverse	7	8	4	9	21	8	9	2	9	7
TTGTAGTGCGATCCCT	ref_3643_reverse	9	21	8	12	17	9	22	9	10	11
GAGCAATTGCACGGTC	ref_3643_reverse	4	9	7	4	9	1	16	4	15	2
ACAGCTTGGAATTAAA	ref_3643_reverse	20	34	20	17	33	20	30	9	54	17
CCAATCTAAAGTTACG	ref_3643_reverse	35	47	37	17	40	22	66	22	56	15
GAGTAGCGATTTCCCA	ref_3643_reverse	5	9	8	6	16	5	12	7	14	10
ACAAGGTGTGGCCGAT	ref_3643_reverse	10	34	17	16	21	13	15	8	25	15
TTAATAGAGGTTCGTG	ref_3643_reverse	14	26	12	10	22	11	27	13	28	10
TTGGGCCTGCATTCGT	ref_3643_reverse	11	15	9	4	21	5	21	11	18	7
ACTCTTTCGTGCTTTA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAAACCTGCAGGG	alt_3643_reverse	47	105	40	43	92	46	102	49	91	28
TCGGCGGTATTGCGGG	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
CTCCAACTTTGTGCCA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
GAACGTCATTCAAGGG	ref_3643_reverse	52	121	58	38	105	56	105	53	114	36
CAAATATAGTAATGTA	ref_3643_reverse	21	38	18	14	35	26	43	19	54	10
TTCCTGTTATCCTTTC	ref_3643_reverse	3	6	4	3	6	2	6	3	1	2
TCGGAGGCAAACCGTG	ref_3643_reverse	27	59	52	37	64	29	62	32	72	48
TGTCTTTGTATTCGGG	ref_3643_reverse	6	20	11	6	29	14	19	3	25	4
CTGTACAGTGAGCCGT	ref_3643_reverse	19	41	21	18	38	19	43	26	31	19
GATGAGCGCTAGTTCC	ref_3643_reverse	10	22	7	19	25	12	26	10	35	10
TCCATAATATTTGAGA	ref_3643_reverse	54	110	59	39	106	49	96	47	122	51
CCGCCCAGGGTAACAT	ref_3643_reverse	9	8	2	7	9	4	5	4	4	2
ACAATTGAGTTCGTTT	ref_3643_reverse	33	112	66	53	114	54	109	48	109	48
TCTTCCGTACCATATT	ref_3643_reverse	10	25	19	8	17	7	22	19	44	7
ACGGAGTATTAAAACT	ref_3643_reverse	2	8	7	3	6	9	8	1	6	7
TAGCTTTCCGTGTATT	ref_3643_reverse	6	6	5	3	11	4	3	5	21	2
CCTAGCTCCCGCGGTA	ref_3643_reverse	8	18	3	5	14	7	11	5	13	5
CACAGGAGATCGTCAA	ref_3643_reverse	0	1	0	1	2	0	3	0	1	0
ACGATCCTTGTGATTC	ref_3643_reverse	20	29	12	6	41	9	43	2	42	13
CAGTTAGCCTTGTTAA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
AGGAAGGCCCTTATTG	ref_3643_reverse	13	24	26	25	26	20	25	17	40	9
TCCCTAGATTAGGAGC	ref_3643_reverse	18	30	24	16	42	14	37	16	45	12
CTTCATCTCCCTATGT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
ACACTACCTTTGTCCT	ref_3643_reverse	2	6	2	3	3	2	9	0	8	0
TATTTGTCTATAATAA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTTCTGCATCTGG	ref_3643_reverse	8	11	4	10	12	8	11	4	23	6
TTAACTTGTAGGTTTT	ref_3643_reverse	18	44	8	7	37	8	31	17	25	21
AAACGCACTCTCGAGC	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
AGCAACACCTTTCACG	ref_3643_reverse	9	34	15	21	56	12	48	19	43	18
GCTATTTAGTTGTTAA	alt_3643_reverse	77	178	84	76	167	78	192	74	181	73
TGGGGTACCAGCACGG	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
TGTAATTTTTTGACCT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCATACCAGTCA	ref_3643_reverse	14	39	13	12	46	12	35	17	51	19
TATGACCGCCAAGATG	ref_3643_reverse	2	2	4	5	6	2	7	7	13	1
AGACAGGGGCTTTATA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
AGTATCATCGAGCCCT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCTCGTTTAATCT	ref_3643_reverse	8	29	29	6	29	12	19	12	23	10
CGGATCCCGGTCCTTA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCGCAATCTAGTT	ref_3643_reverse	16	14	4	5	10	7	25	9	23	13
CCGCATGTTGAGTGAA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
CAGTACAGAATTCAGG	ref_3643_reverse	16	26	25	7	21	16	33	11	38	9
AGTCCAATTTCTTGTA	ref_3643_reverse	5	18	8	5	13	2	16	6	16	8
GCAGAAAGTGGTTAAT	ref_3643_reverse	22	55	19	21	54	15	59	22	50	20
TCAGTAGACTACTTGG	ref_3643_reverse	13	26	15	19	31	15	32	11	19	9
CCAGCCTTCTTATCAC	ref_3643_reverse	11	26	18	9	26	8	27	4	29	5
GCTAGGATGCCGTTCC	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
TGAGACACTAAATCCA	ref_3643_reverse	12	17	16	10	20	8	12	11	32	11
GGAATCGCTGTCTTCC	ref_3643_reverse	3	16	10	2	13	11	12	10	13	2
TTTTACATCATTACTC	ref_3643_reverse	8	10	7	18	22	3	19	5	21	6
TCTGTAGGTAGGGGTG	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCGTTATATGTTT	ref_3643_reverse	12	36	22	16	55	27	37	16	64	25
TTCCCGGAGTAAATCC	ref_3643_reverse	4	12	5	2	16	1	8	3	12	2
ACCCCACCTGCTGATA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
CATTTCTTGCCCTCCG	ref_3643_reverse	14	25	10	10	22	7	13	7	17	6
TCGGGGCTAGCTCTAT	ref_3643_reverse	12	23	16	4	20	9	27	10	13	11
ATATTTTTACGGAACA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
CGAAGCTTACTCAAAC	ref_3643_reverse	3	15	5	3	8	6	11	2	16	1
AACTCTACCCACCCAC	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGCGGGTGGCGTT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGTTCATATCTCT	ref_3643_reverse	2	4	5	5	5	3	6	0	12	5
CGGGGAGCTCCGTTAA	ref_3643_reverse	6	10	11	3	10	6	5	9	9	1
CGAAGGGTTGTATTTT	ref_3643_reverse	13	24	19	7	16	14	21	8	26	6
ATGGCCATCTGTACAG	ref_3643_reverse	0	6	1	1	5	2	14	2	11	1
GTTCGCCAACCTGGAA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTTCTCTGTGGC	ref_3643_reverse	0	3	0	0	1	0	1	0	0	0
TCGATACGCCGCGGCA	ref_3643_reverse	5	22	12	8	21	3	19	5	19	7
TGGTCCTCTGGGCTTA	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTGTTCAATGGAT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCGCACGATGTG	ref_3643_reverse	1	3	3	1	7	1	8	3	1	3
TTTATTGGAACCTATG	ref_3643_reverse	1	6	2	0	5	2	2	1	5	0
GTGAACGGGAAGGTGA	ref_3643_reverse	10	37	21	18	28	22	32	15	33	24
AAATCTTAACGTAAGT	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGGTACAGTAAGT	ref_3643_reverse	2	7	7	1	3	0	3	2	10	2
GGTAGTCAGCGCGGTC	ref_3643_reverse	19	47	14	9	33	17	46	16	35	20
CCTGTTACTGGGAAAC	ref_3643_reverse	0	1	0	1	0	1	3	0	1	0
ATTCTCATCCGGTCGG	ref_3643_reverse	26	64	48	25	72	25	94	39	69	37
AGTCCAAGCTTGTAGT	ref_3643_reverse	42	93	46	38	84	33	86	26	90	45
GATGCCTTCCCGTCCC	ref_3643_reverse	4	10	3	5	11	4	14	2	13	2
TTCTGAGTCGGCCTAT	ref_3643_reverse	7	10	3	2	10	4	10	6	8	1
AGCGTTTGAGTGTCGA	ref_3643_reverse	3	7	7	7	18	2	12	3	17	5
CGCGTGTTTTGATCCC	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTCGTCAACGTAC	ref_3643_reverse	6	6	9	4	12	12	17	4	16	6
GGGATCTCCTAGATGC	ref_3643_reverse	51	93	56	47	83	44	113	47	120	36
TATGGGCATCCCCAGC	ref_3643_reverse	0	0	0	0	0	0	0	0	0	0
TCCAAACCCCCTCCTC	ref_3643_reverse	2	6	0	2	8	4	1	0	4	2
CTTTACACCTTTCCTA	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GAGGCAGTGTCACGAT	alt_913_negative	21	26	34	9	26	11	26	15	22	15
ATATCCGTCTAACCAA	alt_913_negative	29	31	26	19	39	20	38	16	39	26
AACTCGGCATATATTG	alt_913_negative	18	47	35	20	42	30	34	35	45	21
ATGAAGTATAAGCTTT	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TGACTAGGTTGCCGAT	alt_913_negative	3	3	1	1	0	0	0	3	0	1
GCACGCGGCAAGAAGC	alt_913_negative	39	92	64	59	95	49	91	49	111	47
CTATATCCCAACCCCC	alt_913_negative	158	219	196	155	179	165	202	138	216	136
CGGGTTGCAAGCTTAT	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GACTGTCTGTATGCCT	alt_913_negative	0	3	1	0	4	2	2	1	4	3
ACAAGGTATTCGCCAA	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TGCTCGTCGAGTTGAT	alt_913_negative	32	100	52	53	69	61	86	42	81	48
TGTCTAGGGCCCTATA	alt_913_negative	18	34	15	19	22	16	30	12	35	18
GACCGTTGTATCATTT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
AAGCACGAAGCTTGCC	alt_913_negative	6	20	15	17	8	11	17	7	14	11
TAACGTCCTTGCCTCC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TGTCACTTATGATCGA	alt_913_negative	9	12	13	4	9	6	12	12	11	3
CTATTTTGTTGATCTT	alt_913_negative	0	0	0	0	0	0	0	0	0	0
CGCGTTATTAAGGAAT	alt_913_negative	0	0	0	0	0	0	0	0	0	0
AAACTATTTCTTGTGT	alt_913_negative	20	71	27	36	56	41	55	29	43	30
GATGTCCTTTGCGTTT	alt_913_negative	22	24	17	20	37	12	40	22	34	21
CTGGGCGCTGCCATGC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
CGAGCTTGTTTTATAA	alt_913_negative	4	6	6	1	11	5	6	4	7	6
GCTACCTGACGCACGT	alt_913_negative	94	161	127	118	219	116	212	115	217	99
TCATCGCCGGTTTAGT	alt_913_negative	12	26	10	11	12	4	20	10	22	11
GGCCAAGTGCCTGAAG	alt_913_negative	0	0	0	0	0	0	0	0	0	0
ACCTCTTGCCTCTAAA	alt_913_negative	35	44	29	22	44	19	37	18	29	30
GAATTCTGTACACAAT	alt_913_negative	61	75	58	69	112	67	83	58	72	64
TTATCGAGTGTCAGGG	alt_913_negative	0	0	0	0	0	0	0	0	0	0
AGACCCTCGCCGAATC	alt_913_negative	14	36	9	17	23	8	20	7	23	16
TGCCTATTTAAAAAGG	alt_913_negative	64	104	94	80	119	75	115	61	90	53
AGCGTGTACTGGATTA	alt_913_negative	24	25	25	12	23	18	21	13	25	13
GTTCCGGATATAAACC	alt_913_negative	5	28	5	12	28	5	22	6	35	7
TCTTGAACCACTACCA	alt_913_negative	93	143	127	106	158	113	172	88	157	105
AAGTGCCTCCATACTT	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GCTGCGGTACATGCTA	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TGGTAGGTGAAAAGTC	alt_913_negative	48	89	82	75	69	64	83	58	93	41
CTAGGAGGTCTTCCCC	alt_913_negative	2	11	6	1	0	2	3	0	5	5
TACCCGTACGTCCGAA	alt_913_negative	0	0	0	0	0	0	0	0	0	0
AAGTCTAGTCTAAGTC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TAGCGCAAGGCTTGCT	ref_913_negative	45	78	45	42	58	42	68	36	85	31
CACATTAGTAAGTTGT	alt_913_negative	80	131	102	88	139	76	140	62	119	74
TCGTGCTCCATGGACC	alt_913_negative	6	7	7	5	10	9	6	8	7	12
GCTTTTGTGGGCTTTC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GGTCCGTCACGCAACG	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GATACCTCACGGGCCA	alt_913_negative	13	21	9	22	19	14	19	13	23	17
TACTACGGCTCCCGGT	alt_913_negative	13	49	18	36	38	19	40	26	36	15
GCCACTACTCTCCGCG	alt_913_negative	9	11	13	10	14	12	18	11	25	7
TCGTTTTGATGTCAGG	alt_913_negative	19	27	24	17	29	23	18	16	19	8
TTACCAGCGCCCGGTG	alt_913_negative	22	28	20	27	32	28	38	22	33	19
CCAGCATGGGCCGCCT	alt_913_negative	1	2	2	0	1	0	1	3	0	0
ATCCCTTCGCTTACAG	alt_913_negative	26	48	35	27	57	19	47	24	63	20
TAGGTCGCATCTCCTA	alt_913_negative	7	9	9	10	15	9	18	16	14	12
ATGGCGACTACCGGGG	alt_913_negative	35	34	41	38	37	30	41	20	39	26
GCTCCGCTGACTTGGA	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TTCTGATCTCAGTGTT	alt_913_negative	2	6	3	4	7	3	2	4	7	4
TTACAATAGGAATACA	alt_913_negative	7	9	8	15	25	16	12	5	26	9
GCTAACATTGTTAGGC	alt_913_negative	56	100	86	85	112	67	109	77	136	69
GTCACCTTCTATCTGT	alt_913_negative	11	18	16	8	27	9	16	15	32	5
GCTCCAGTCGGTGGGA	alt_913_negative	0	0	0	0	0	0	0	0	0	0
CCTCCCGTTAGAAGGG	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GGCATGCAGCGTAATT	alt_913_negative	6	6	7	7	7	4	2	2	5	9
CTTCGATACGGGGTGC	alt_913_negative	20	23	27	26	31	17	29	16	37	9
CGCCCGCACTCAGGAC	alt_913_negative	23	46	50	21	52	26	47	35	60	30
TTGTGGGGAGCTCCCA	alt_913_negative	17	21	13	14	29	12	26	20	27	15
TGCTACCAGCGAGTTG	alt_913_negative	72	86	71	54	125	71	112	77	110	67
ACTTCTCAGCAATGTG	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TGTGTGGTTCAGCAGC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
AGATGATGTCACTGTA	alt_913_negative	5	10	16	3	9	10	11	6	15	17
TCAGAGGCGCATCCAG	alt_913_negative	102	172	159	139	139	117	174	103	205	102
TTTTCTACCGTCAGCT	alt_913_negative	18	31	24	23	40	26	26	29	39	18
AAGGTGACTTCATGGG	alt_913_negative	3	11	8	6	2	1	6	7	10	5
TATCTTTTGCTAACCG	ref_913_negative	55	88	63	49	79	51	99	43	82	47
AGTCCAAGAGCAATAG	ref_913_negative	17	42	15	16	26	21	41	17	49	24
TGTGCGTTCCTCCCCG	alt_913_negative	8	35	24	15	40	12	46	14	43	11
GGCTCCCAATTTGTTA	alt_913_negative	0	7	1	3	7	1	8	2	7	1
GTCATGCTATGTACAT	alt_913_negative	40	66	34	47	71	41	63	44	66	19
ACCGATATGGCTCGTT	alt_913_negative	0	0	0	0	0	0	0	0	0	0
CGGCTCACGACGGTTT	alt_913_negative	48	71	47	47	63	53	73	31	56	48
GATGTATAGCCGCCTA	alt_913_negative	17	28	8	8	13	17	24	7	19	8
TGTCGATAAACGTTGC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GTTTTCTGGGACTTTT	alt_913_negative	3	4	3	8	6	11	13	4	9	6
TGCTGGGCAAGCGGTT	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TCATGTCCTCTAATTG	alt_913_negative	7	7	5	5	9	2	9	2	8	1
TATTGATTTAAGCCAC	alt_913_negative	33	49	43	23	36	37	50	25	47	28
AGACGTGATGTTACAA	alt_913_negative	18	22	28	19	32	12	25	16	30	12
CATTTTTTCGGTTTGC	alt_913_negative	8	9	7	1	13	7	14	6	10	7
TGTTGACTCGCTATCA	alt_913_negative	28	42	19	19	27	25	45	17	33	23
AGTAGTGCTCAATAAG	alt_913_negative	19	18	15	20	31	7	23	13	38	14
AACTACCTATAAATTA	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TTATACCGTATATTTG	alt_913_negative	26	71	31	35	70	33	70	42	96	22
TAACCATGGTCCTTAC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GCGTCAGTGGTTCTTC	alt_913_negative	9	19	19	13	20	8	20	12	21	13
ATGTTATCCGTTGATG	alt_913_negative	0	0	0	0	0	0	0	0	0	0
AACCCTTCGCTTACAG	alt_913_negative	0	0	0	0	0	0	0	0	0	0
TTGACGTAGTTAACAG	alt_913_negative	15	15	11	6	10	10	20	3	13	12
CGTTCCTGCGACGATC	alt_913_negative	17	40	31	23	37	27	27	20	29	17
GAAACGCTTCCGTACC	alt_913_negative	7	15	18	8	17	13	14	10	19	12
CATCATACCCCTAGTT	alt_913_negative	43	76	44	53	96	39	87	35	92	35
TGCCTGCCATCGTTCG	alt_913_negative	11	8	16	11	18	11	15	10	10	7
CTCGCAGACTAAATAC	alt_913_negative	2	6	1	2	4	5	2	6	1	1
GTCTACTGTGTCTTTC	alt_913_negative	19	28	25	25	32	14	41	22	36	20
TCGACCACACCTGGTC	alt_913_negative	27	33	24	19	30	25	25	24	35	14
AAACTCCTGACCAGGC	alt_913_negative	52	62	58	51	70	59	85	46	82	57
TAAGTGCCTTACGCCC	alt_913_negative	0	0	0	0	0	0	0	0	0	0
GGCACTGATAGTCTGG	alt_913_negative	55	94	72	67	91	71	118	57	114	57
CACGACCTCAGGGCAA	alt_913_negative	10	8	8	1	9	11	1	3	10	1
TTGTGTCTGTGGATTG	alt_913_negative	42	56	31	17	52	32	49	34	64	24
AACGAATGTGTGGCAG	alt_913_negative	66	99	78	67	116	58	87	42	93	51
GCTATTTAGTCACAAG	alt_913_negative	69	117	100	67	120	89	118	67	139	61
GTTATAACAATGCCTT	alt_913_negative	5	7	8	4	7	4	4	3	4	1
CCAAGTATTCATATCG	ref_6008_new	15	22	24	17	30	14	33	16	26	18
CACGAACATATAACGC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CGTTGCTGTAGACTAC	ref_6008_new	33	30	48	39	34	30	26	36	42	30
AGATCTTCTATTGAGG	ref_6008_new	0	0	0	0	0	0	0	0	0	0
TGGCTAGCAGAACAAC	ref_6008_new	73	86	111	73	95	78	79	71	87	69
TGGACACTCCTTACCG	ref_6008_new	5	23	3	6	13	2	12	7	20	6
TTTGGGTGGCACTATT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CCAGTCTGGGCATTTT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
AATGACATCTTATTAC	ref_6008_new	27	41	39	38	42	34	46	34	33	31
CATAAGCTCTCCTTCT	ref_6008_new	108	66	113	104	53	62	63	91	74	78
CGTCAGCGTGAAGTCT	ref_6008_new	12	17	24	15	16	29	27	19	26	20
TATCGAAAACTGTAAA	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGGATCAGTGC	ref_6008_new	90	83	123	99	74	98	90	83	71	78
GGCACGAACTTTACTA	ref_6008_new	0	0	0	0	0	0	0	0	0	0
TACACCAATAAAAACT	ref_6008_new	35	40	26	37	35	23	33	37	31	27
CGGCTCCAACTGGTCA	ref_6008_new	215	247	198	192	285	156	255	179	219	167
AATACGCGAAATAGTC	ref_6008_new	36	24	45	28	30	23	39	27	32	35
GGTCGCGCTATTAGTG	ref_6008_new	12	18	19	31	22	13	23	16	19	26
CTCATCGAGTAGAAAT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
TCGCCGTCCGCAGCGT	ref_6008_new	7	7	21	9	3	5	7	8	6	8
CGCACTCACATGTTGA	ref_6008_new	40	25	30	29	28	21	21	24	14	23
CAGCTGGTCGGCAGAT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GTTTCGTATCTGGCAC	ref_6008_new	50	74	68	77	69	69	70	58	81	58
GGACTAACACCAAAAA	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GGGATGCGTGTCTGTC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
TATTGAGAGTGGTTTC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CAGTAGTACCGGTCGG	ref_6008_new	5	18	14	11	9	13	10	16	13	6
ATGAGCCCGGAATATC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CTGATAGCACTGTAGT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CTCGCTTTCGGTTTTA	ref_6008_new	14	13	22	12	16	14	7	18	17	7
TGACGAGTTTCGATTA	ref_6008_new	16	16	24	30	17	19	24	14	25	25
CGGACGTAGAAGATTT	ref_6008_new	18	9	20	10	12	10	9	20	11	16
CGCTCTTCCGCGCGAA	ref_6008_new	18	34	17	18	18	16	16	19	24	14
CTGATATAATCTTGGC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GACATAGTAGTTCATG	ref_6008_new	38	48	61	53	37	59	43	39	37	53
TACGGCGTGTGAGCTC	ref_6008_new	32	22	35	27	44	34	35	25	26	29
ATATGCGAACTTCAGG	ref_6008_new	76	75	70	76	76	69	80	84	59	93
TAGCCTACTATGATTC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CCAGGCTAGGGAAGTC	ref_6008_new	37	29	43	43	49	22	52	31	53	46
GAAGACACGCAGTTAG	ref_6008_new	17	13	17	5	22	15	11	8	9	11
AGATGCGCTGGGGTTC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CTACATCCTCCAATCA	ref_6008_new	8	11	16	15	12	7	12	13	11	6
TCATCCTTCCGACTCG	ref_6008_new	66	52	85	69	70	56	63	63	53	44
GAGTACTTTAAGATGC	ref_6008_new	13	4	3	14	4	7	5	2	8	5
ATTTTAGGGTACATGG	ref_6008_new	0	0	0	0	2	0	1	0	1	0
CACGCTTCCTTTTCTC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CAGTCCGCGTCAGTAC	ref_6008_new	193	220	201	192	199	180	196	176	186	121
ATTAAGATCTGTTTCG	alt_6008_new	66	64	82	87	62	67	68	95	69	45
ACTACATGAAGCAAGT	ref_6008_new	236	176	296	266	205	248	202	262	212	228
GTCTTCGGAGATGTCC	ref_6008_new	25	22	31	17	18	22	21	17	25	25
TGCTTTTCATATTGTG	ref_6008_new	44	30	56	55	28	37	31	35	48	38
GCGGTGCTACGCATAT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
TTGTCGAGCTTTGCTG	ref_6008_new	120	106	144	118	115	128	130	130	109	100
TACGGTGTGGTGGGGC	ref_6008_new	7	7	11	7	9	0	9	3	5	8
TCAAGTCAGCGCCTCT	ref_6008_new	54	55	65	64	71	46	55	65	68	65
GACCGATATCCTTCGG	ref_6008_new	33	33	42	34	28	26	39	30	40	30
ACTGGGTCACTCCTAA	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CCCTCTGGCGCAGGGT	ref_6008_new	12	25	27	24	17	16	20	15	26	22
TCTAGTTATATTCAGT	ref_6008_new	4	10	6	7	11	4	8	7	7	4
CATTTATTTGCTGTAC	ref_6008_new	44	39	61	58	49	53	43	53	58	47
GTGCCATCTGCAACGA	ref_6008_new	36	39	50	43	31	32	48	42	42	40
GTTCGAATCGTTACAT	ref_6008_new	11	11	14	11	11	9	18	12	13	12
ATGTACTTTTTGTCCC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GGACGTTGGTGATTGA	ref_6008_new	3	6	7	3	6	6	3	7	7	2
TACCCTACTGTGTGCG	alt_6008_new	382	475	459	412	531	391	524	403	507	351
GTGTATTACCATCCAT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CAGTCCTAACCATCAG	ref_6008_new	9	13	15	10	7	14	13	12	13	17
TAGAAATACTGTCATT	ref_6008_new	5	0	0	3	3	4	0	1	3	1
TTCGCCTTTCGGGAAC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CCACATTCGTCAGGAT	ref_6008_new	27	31	15	20	26	17	19	13	25	17
GCGCAATACTGTTCTT	ref_6008_new	25	32	42	30	39	22	35	33	27	20
TATGATTTGCTAGAAA	ref_6008_new	4	0	3	3	4	0	0	1	3	2
ATCTCTCAGGACTCAG	ref_6008_new	7	9	9	11	4	7	12	7	5	5
CGTTCCGAATGCTATA	ref_6008_new	27	21	29	13	27	30	25	25	32	30
GGAGTTATCGCTCGTT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
TAGGACTCTACAAACC	ref_6008_new	35	20	40	32	38	24	45	27	33	44
ATCACCTCTTATCCGT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
TTATTATTGTTCACTA	ref_6008_new	36	35	32	17	25	28	26	32	30	22
TTCAGTGCACCGGCAT	ref_6008_new	48	54	116	90	71	90	75	90	86	65
GGGTTGAGGGCGTCCA	ref_6008_new	24	9	18	16	13	17	10	20	17	14
TATCTAAAGGGACCAT	ref_6008_new	141	131	186	145	128	134	139	166	116	156
AGATTTTGTATTTCCC	ref_6008_new	7	6	12	9	8	7	7	9	10	12
TAGTGTCATCTATTTT	ref_6008_new	6	10	6	7	15	8	5	4	7	5
ATGGGCGACGTTGGCC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GGACATGCTATAATTA	ref_6008_new	90	49	87	84	71	83	70	73	54	62
TGTTCTCTGCTGCATC	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GTCTACTTGATGTGCG	ref_6008_new	104	114	131	100	103	72	84	76	113	90
TATCGAGTCACCTGTC	ref_6008_new	48	55	61	57	37	48	46	33	55	36
TCGGCTGCTTAGGGTC	ref_6008_new	30	45	38	43	36	38	45	45	59	24
ATAGCTGCACTTCTGT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GCGCGCTGACTCTATC	ref_6008_new	2	10	3	5	6	8	7	3	3	4
TTATAAGGCATGCATA	ref_6008_new	0	0	0	0	0	0	0	0	0	0
GTTATGGTCATCGTAA	ref_6008_new	33	37	42	31	29	28	37	24	31	30
ATTCTCACCTGGTCCA	ref_6008_new	77	108	98	75	88	75	93	77	89	67
CCTCGGTAGTATCATT	ref_6008_new	0	0	0	0	0	0	0	0	0	0
CAGTTGTACGTCTCTA	alt_5690_new	11	27	25	30	32	18	39	18	27	15
ATGAAATTATTTTGAT	alt_5690_new	19	48	38	23	55	28	38	31	29	26
GAGCATGGTTTTCAAA	alt_5690_new	19	30	32	25	27	15	28	25	29	23
CTCCCAAGCTGGTACG	alt_5690_new	0	6	2	2	6	0	2	3	3	5
TTTGGTCTTCGTCCTA	alt_5690_new	0	0	0	0	0	0	0	0	0	0
ACATTCGTGGATATCG	alt_5690_new	61	57	39	55	64	43	70	30	66	37
ACCGCCTGTCCCCCAG	alt_5690_new	25	45	29	34	57	33	54	22	59	25
ATTCCCATTGAAGGGC	alt_5690_new	81	108	101	66	102	61	107	82	113	76
TACAGTTGTCTCTACG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
TTTTGCCTTGTTTAAC	alt_5690_new	57	72	73	65	62	63	93	51	80	67
TGACGGTCCAGATCAT	alt_5690_new	245	247	269	195	318	180	286	209	273	207
CAAAATGCTGCATACG	alt_5690_new	74	110	107	78	122	84	120	87	125	78
CTTTCTTTTTGCCGGC	alt_5690_new	58	76	80	58	81	62	96	70	83	74
ACCCGATCAGCACACC	alt_5690_new	9	13	13	15	16	10	19	11	7	5
ATTCTGTCTTTATTTC	alt_5690_new	42	41	45	29	37	37	46	38	64	28
GGTTGCATATTAGCTC	alt_5690_new	17	21	22	14	19	14	22	17	27	13
TAATTTTCCTTGGCTC	alt_5690_new	3	6	5	5	4	1	4	2	5	0
TCTTTGCTCTGTCCAA	alt_5690_new	0	0	0	0	0	0	0	0	0	0
GGAAGCTCGCGCGTTA	alt_5690_new	0	0	0	0	0	0	0	0	0	0
CTCCCCAGTGAAACGA	alt_5690_new	4	32	9	3	28	3	32	1	25	2
CTGTGAGTCTTTTGGA	alt_5690_new	143	229	172	141	210	122	217	122	223	97
AACATATTGGCGACAC	alt_5690_new	0	0	0	0	0	0	0	0	0	0
TCCTTCACTCGCTCTT	alt_5690_new	8	26	10	2	21	12	25	5	31	8
AATGGGAGTACAGCCG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
GCCTCGTACATCATAC	alt_5690_new	14	15	8	2	6	6	9	3	9	6
GGTAAGGGACGTAGAA	alt_5690_new	0	0	0	0	0	0	0	0	0	0
AGCATGGCTAACAAAC	alt_5690_new	34	33	39	23	26	22	21	28	36	29
GGATTCAAAGTCCAGA	alt_5690_new	0	0	0	0	0	0	0	0	0	0
TTCTTCTCGTTGCTTA	alt_5690_new	170	143	177	160	203	138	183	157	183	111
AATGTACGCGGTGAGA	alt_5690_new	3	14	10	10	18	14	10	8	11	9
GTGATAAGTAAAAGCT	alt_5690_new	96	98	99	85	114	74	116	67	114	67
CTGGGTTGGCTGATTG	alt_5690_new	2	2	6	8	6	2	2	10	6	0
TGTTCAGAACCCACTT	alt_5690_new	17	26	17	15	25	19	26	19	24	17
GAGGTCATAATCCTCG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
CGTAAGCGGGAACGTG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
ACTATTCGCCTGGTTT	alt_5690_new	89	131	120	77	138	101	143	96	161	86
GTCAACGGATTTCCTC	alt_5690_new	9	23	21	25	18	15	26	21	32	13
TCTTGCATGCCCGTGC	alt_5690_new	33	45	34	41	45	42	61	42	44	28
CGCAGATCTAGAGAAG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
GAGCTTTGAAGCGGCT	alt_5690_new	3	5	5	7	5	3	6	1	3	12
GTTACCTCATTCAGCA	alt_5690_new	5	6	4	3	5	7	6	2	6	2
TCTTTCGCACCTGGCA	alt_5690_new	11	10	13	10	12	6	12	6	15	12
AGCTTTAGAGGCTTTG	alt_5690_new	5	4	5	1	3	3	5	5	13	3
ATCGGACGCTAAAGGG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
CCGATGTAGGGTTGCT	alt_5690_new	34	52	42	33	49	40	65	30	47	38
TACCACGTTTGGGTTG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
CCTCTTCCATACTTTT	alt_5690_new	10	14	24	13	25	7	32	17	25	13
CCGTAACACTTCACTA	alt_5690_new	20	41	22	19	46	16	29	16	31	11
GGCGGTCACGTTCTCA	alt_5690_new	12	11	6	4	11	9	10	6	4	8
TCGAATATTTAGTTTA	alt_5690_new	0	1	0	0	0	1	0	0	0	0
GATTGTATGTGCTCCG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
CTGGATTCCTTGTTGT	alt_5690_new	0	0	0	0	0	0	0	0	0	0
GTAACTCGTTGGTTTT	alt_5690_new	6	8	15	10	4	12	14	7	11	8
GGTTTAATACAGCGTC	alt_5690_new	120	156	145	139	166	128	188	100	190	107
CCTGGACCACCGGCAA	alt_5690_new	2	7	3	5	7	4	3	1	4	0
GACTGGTTTTTTGGAT	alt_5690_new	3	4	4	6	8	4	7	3	8	4
CGTCAGTAGCTTGAGG	alt_5690_new	78	101	93	90	122	89	93	64	113	62
CGCACCGATTCCCTCA	alt_5690_new	130	159	144	143	163	121	166	121	183	115
TCTGGTCCCAGGGAAC	alt_5690_new	61	119	92	73	135	56	123	73	128	80
CATCTAATTAATAACG	alt_5690_new	17	11	25	18	27	10	23	12	22	5
AGCGGGTTGAGCAATT	alt_5690_new	63	69	67	61	87	50	65	50	62	54
ACCGCGACTAACATAG	alt_5690_new	54	77	52	49	93	45	77	37	88	47
ACTACTCATAGATCAG	alt_5690_new	16	38	17	20	28	16	26	18	28	23
GCGTTGCGTCCAGGTT	alt_5690_new	7	19	14	6	15	4	15	9	14	12
CGTTTTGTAGGACGTC	alt_5690_new	39	65	58	42	47	48	53	35	37	46
AACGGACTTCGCCGCG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
AGTTCCTTGCAGTCAA	alt_5690_new	38	76	55	50	59	37	55	46	93	29
TATTTTTCGCCATCAT	alt_5690_new	61	83	92	72	98	69	135	73	113	64
CTCAGCTATCGTTACT	alt_5690_new	14	21	18	11	18	7	19	9	24	21
TGAATGTGTATTTCGG	alt_5690_new	51	70	46	49	77	45	84	40	95	49
TATTCTACCCGGTCGG	alt_5690_new	43	84	47	33	96	44	100	24	79	48
CGCAGTTCCGGACAAA	alt_5690_new	3	5	1	4	3	3	1	5	6	3
AAGCGCATTAAGGCCG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
GGCTTAGAACACCCTG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
ACCTGAGGTCCTTTCC	alt_5690_new	29	44	40	27	43	20	37	28	46	19
CACTTTGGATGCACCA	alt_5690_new	0	0	0	0	0	0	0	0	0	0
TCGGGTAGAGCCACAG	alt_5690_new	11	16	17	7	17	11	12	7	11	5
CGAACATCAGCGAGAT	alt_5690_new	0	0	0	0	0	0	0	0	0	0
TCCCTCTCAACGAGAA	alt_5690_new	28	27	29	24	21	21	24	17	30	13
GGGGGGGCACTGCGAA	alt_5690_new	36	33	21	17	26	18	23	26	32	34
TCATAATCCTGACACT	alt_5690_new	2	14	8	18	20	3	18	8	12	9
CTGTGATGGTTTATCG	alt_5690_new	38	52	65	40	69	41	61	40	64	40
CGGGGTACCATTACCC	alt_5690_new	0	0	0	0	0	0	0	0	0	0
AACAGAGTCGGTATCT	alt_5690_new	45	52	41	32	61	32	74	30	54	37
CCCCTCATACTGTTTG	alt_5690_new	6	31	3	6	46	4	50	2	36	7
CCGGCTTCTTGCATAA	alt_5690_new	0	4	1	0	7	0	2	0	16	1
ATTAGGTACGGGTTAG	alt_5690_new	12	9	6	12	8	5	14	6	9	10
CGGCCTCGCCGCCGAA	alt_5690_new	28	42	40	35	45	35	39	38	40	35
ATTTTCCCATCGCCGG	alt_5690_new	26	19	29	22	17	15	23	22	30	14
TCTTCAGTTGAAACTC	alt_5690_new	10	9	3	9	14	26	21	7	16	4
GCGAAAACGCCCATCA	alt_5690_new	116	159	144	132	195	129	159	101	174	122
GTGTACATTATGTGTA	alt_5690_new	40	33	27	29	49	23	27	21	42	34
GTACTGTGTTATCCTT	alt_5690_new	20	19	19	10	23	15	16	12	22	17
AATTGTAGTCGCTAAG	alt_5690_new	27	42	32	34	61	28	43	29	53	31
GATATGCTAACTCGGC	alt_5690_new	0	0	0	0	0	0	0	0	0	0
AGGAGGCGATTCGGTA	alt_5690_new	34	34	28	13	44	29	35	37	48	17
TTCCGTGTACAGGCGA	alt_5690_new	13	19	6	12	22	15	23	11	18	11
CGCACGTGTATTTCTC	alt_5690_new	0	0	0	0	0	0	0	0	0	0
TCCCTCTGTTTCTTTG	alt_5690_new	115	121	163	126	97	125	142	114	140	111
TCTAGATTGGGTCTTG	alt_5690_new	0	0	0	0	0	0	0	0	0	0
TAACTAATATCGATTG	alt_5690_new	18	21	22	21	8	11	25	8	27	8
GGCGTATCCTGGCAAT	alt_5690_new	19	34	30	25	36	21	27	26	28	23
TTGGTTATAATGAAAT	alt_5690_new	16	15	12	15	14	19	12	11	17	11
AATTATCGGTTGTATC	alt_5690_new	0	0	0	0	0	0	0	0	0	0
CATTAACCCTCTGGTT	alt_5690_new	2	0	2	2	3	2	2	2	2	0
GAGACCAGTCCATGTG	alt_5690_new	5	23	15	7	12	7	13	17	14	17
TTGACTGTACAGCTTG	alt_5690_new	12	14	5	5	18	7	11	10	14	9
TTCCGAATCTTTGCCA	alt_5690_new	0	0	0	0	0	0	0	0	0	0
AGTGCGCCGTGGGAGG	alt_5690_new	148	145	142	109	162	125	156	131	176	106
GGCATCAATCAAGTGT	alt_5690_new	7	13	10	9	15	11	21	7	10	9
TATACTTACGCCTTCA	alt_5690_new	14	41	21	15	33	18	45	19	44	14
GTTTAGGGTCTTATTG	alt_5690_new	33	45	50	24	40	33	44	29	50	32
CTGCACTTTTTAGGCA	ref_3640_reverse	2	5	5	1	3	3	3	3	4	3
CATGAGAATACATAGT	alt_3640_reverse	16	28	26	29	16	31	16	15	21	12
CATCATGTGTTTCCGT	alt_3640_reverse	9	5	13	14	9	8	7	13	9	11
CATAACAGTTGTGTTT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTTTCGATCCTAG	alt_3640_reverse	22	26	31	29	22	24	21	20	25	18
CCTAGGGCCTAATAAT	alt_3640_reverse	3	5	6	7	7	7	8	2	5	3
AGTTCCATGTCTTTTG	alt_3640_reverse	55	44	55	68	38	50	52	50	44	54
GGCGCGTGGCAGTTGG	alt_3640_reverse	90	74	125	90	86	111	100	69	100	73
ATTGGTTCGACGCTGG	alt_3640_reverse	20	16	13	18	15	19	15	15	18	17
TCAAGGGTCGAATCTT	ref_3640_reverse	99	89	151	133	82	112	101	88	101	84
CACGACGTCATCTAAA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCTTACATGGTACCTC	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CGAAGCCGAGTCCTCG	alt_3640_reverse	55	34	32	52	33	27	55	47	39	35
CCCACCGCGTTTCGTG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGATTAGCCGCTG	alt_3640_reverse	75	66	118	92	72	79	83	66	68	60
TTCAAGGTATCCTAGT	ref_3640_reverse	40	29	49	43	35	23	36	30	36	30
CAGGTACTCTCCGAAG	alt_3640_reverse	44	46	48	42	64	38	45	42	36	36
GGGTGTCAGTGCGACG	alt_3640_reverse	49	51	64	66	46	41	55	40	49	36
CCTATGCGTGTGGCCT	alt_3640_reverse	21	21	27	13	25	20	28	22	20	8
CAGGTGGTCGATGAGC	alt_3640_reverse	29	15	48	27	23	21	36	22	33	15
TAGGGCATACACAAGT	alt_3640_reverse	12	8	14	11	10	9	12	5	11	3
CTCGAGGGCTTGGATG	alt_3640_reverse	167	115	165	161	159	136	140	151	166	144
GTAGGAGTGAGTAGAA	alt_3640_reverse	146	140	193	153	153	119	145	151	145	142
TGTGCGGCGTTACGCG	ref_3640_reverse	529	489	589	548	492	459	489	432	570	465
AGGTAACGTCACCGTG	alt_3640_reverse	20	15	29	21	19	26	16	20	14	19
TGCCGTCATAGGCGTC	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCATCGCGTAGTA	alt_3640_reverse	62	59	94	49	67	76	52	66	80	56
TGCCTCCACTTGTATC	alt_3640_reverse	44	82	64	35	103	55	117	48	80	36
ATCCGTGGCTATTGGC	alt_3640_reverse	0	1	2	1	1	0	4	3	1	0
GAAATTTTAGACTTAG	alt_3640_reverse	82	67	101	87	55	72	72	64	68	84
CGTTGCTACATTAACC	alt_3640_reverse	11	8	10	15	12	6	10	17	8	12
GCGGCCTTTGTGTCGG	alt_3640_reverse	27	33	32	19	26	22	20	18	30	20
TTTTTCGAGTTATAGT	alt_3640_reverse	22	22	26	31	16	25	23	20	29	21
CAGCTTACTGTCTTTC	alt_3640_reverse	12	11	20	7	15	7	17	7	9	4
TTACTCCTACAAGCCG	ref_3640_reverse	96	82	81	69	82	63	100	60	108	79
TAGTTGGGTTTCCGTA	alt_3640_reverse	11	4	9	8	3	7	5	8	15	7
CTTGTTCAGCATTCTA	alt_3640_reverse	31	38	47	37	43	41	33	31	37	31
CTATACGAAGTAATCT	alt_3640_reverse	78	54	53	69	63	61	62	70	67	65
GCTCGGGATCGCTTCA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTTGGATTCATGT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTATCGCCTTATAAGT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
AGCGCCATGCGTTCAA	alt_3640_reverse	28	23	24	28	17	24	17	26	29	30
CCGTGATAGTACTATT	alt_3640_reverse	28	17	28	34	24	20	38	25	29	17
TAAGATTGAGAACTCT	alt_3640_reverse	14	13	19	14	12	14	10	13	18	12
CTCGCTCCAAGCTAGT	alt_3640_reverse	93	93	103	72	87	78	75	68	71	56
CTCACAAACGAGATTA	alt_3640_reverse	30	33	44	28	28	31	36	33	29	28
GCGCACGGCCGTTATC	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
GTCTACTCAGCACAGA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGGGTTAATTTAA	alt_3640_reverse	2	3	1	2	3	0	0	0	0	3
TTTGTAGCTAGCCTTT	alt_3640_reverse	37	43	64	44	42	58	49	42	53	50
ACCCGTCAAGTGGTCT	alt_3640_reverse	3	13	9	6	15	9	16	6	17	5
ATTCATGTGCAAACAC	alt_3640_reverse	24	29	29	31	36	22	30	24	45	29
TCCGCTCAACTGACCA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCTATTAAGCCTT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
GGGACACGAACGACTC	alt_3640_reverse	3	0	0	1	3	1	1	0	1	0
AACGTTTAAGAATCTC	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGCATGCTAGATT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCGTCATGTTTCT	alt_3640_reverse	2	8	10	4	2	7	3	1	6	1
AAACGTGTTTCGCTTA	alt_3640_reverse	0	1	3	3	1	0	0	1	4	0
AAAATCTAAGTGATAG	alt_3640_reverse	51	48	61	48	51	39	53	55	49	47
TGTGTAGAGCCCCTGG	alt_3640_reverse	71	57	83	67	72	58	52	48	78	63
TTACTTTATGGTATCG	alt_3640_reverse	22	26	38	33	28	26	33	34	43	33
TCTTTTGAGATCGGCT	alt_3640_reverse	58	31	50	39	33	35	36	41	33	50
GTAACTTATGTTGCCG	alt_3640_reverse	17	16	37	22	21	23	31	18	27	15
ATGGCGTATAATTATG	alt_3640_reverse	4	0	3	1	1	3	2	3	1	3
CGTCCCAGGGGCCTAC	alt_3640_reverse	22	28	25	45	31	24	29	36	29	35
CTTTTCTAGAACAGTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTTTCGCTATTGTTCA	ref_3640_reverse	131	150	185	128	160	115	137	112	166	118
CTGAGCGATCGGGATA	alt_3640_reverse	20	18	25	18	11	21	19	20	21	8
TACGCACACTGGGCAA	alt_3640_reverse	29	25	33	23	24	26	16	34	27	20
CTTCGGTACCTCTAGG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGAATGACGTGCG	alt_3640_reverse	14	18	21	10	25	17	16	18	23	16
TAACCGTACTCTCAGC	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCCGTGTCCCCTA	alt_3640_reverse	21	39	37	27	36	33	42	22	35	27
ATGTTGAGCTGTTAAG	alt_3640_reverse	31	31	29	25	30	38	32	20	46	20
AGAGTACTGACTGGTC	alt_3640_reverse	22	18	20	24	24	20	17	33	26	12
CTAGCTCATTCTATCT	alt_3640_reverse	19	20	38	19	22	18	22	26	23	14
TATCGTTCTGACGTAA	alt_3640_reverse	10	8	9	16	12	10	8	11	10	13
CCTTTGCATCAGACAA	alt_3640_reverse	9	6	7	4	8	8	3	9	8	8
TCTCTGAGGGAGTACA	alt_3640_reverse	2	2	2	1	4	4	0	2	1	2
TGATCAATGGTTCCAA	alt_3640_reverse	57	48	71	53	41	51	52	52	49	49
ACTATTCAGGTTCCAT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CCTAACGATGGGAATT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
GGAAACGGTTCGCGCC	alt_3640_reverse	66	40	72	70	49	55	49	48	55	49
GCAGTAATGGCCTGTC	alt_3640_reverse	3	5	7	4	8	2	4	5	5	10
TGGAATAACCCAGTAC	alt_3640_reverse	31	35	32	27	37	22	27	21	23	29
AAGATTGTCTCCACGC	alt_3640_reverse	44	31	41	31	27	27	29	23	28	26
TACGGGAGTGCGACAG	alt_3640_reverse	12	18	15	16	13	9	15	10	10	17
GATTTGAGTGTATTAC	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCCAGGTTTGCGA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCAATCTTGGATTTGG	alt_3640_reverse	127	100	118	126	106	104	136	96	111	128
TCCTAGTAGTTTCAGC	alt_3640_reverse	67	59	69	61	72	72	60	53	67	58
GTTGGTTGGTATGCGA	alt_3640_reverse	7	5	3	10	5	5	9	10	8	8
CAATCTCACGTCAGCA	alt_3640_reverse	4	4	13	14	15	12	7	12	9	6
AGGTCGCCTGTGATTC	alt_3640_reverse	21	16	15	20	15	8	14	13	16	11
TTGAAGGCTGGTTCAT	alt_3640_reverse	8	13	9	9	4	7	8	5	7	5
AGGATGCGCTTGAGCC	ref_3640_reverse	68	51	65	55	65	46	65	50	55	58
TAGCCGCTCCGTTGGG	alt_3640_reverse	30	24	26	29	32	24	20	23	27	17
GAGCAGATTTGCATCT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CTGATTTATACGCTGG	alt_3640_reverse	98	78	106	92	121	94	109	75	92	92
CTCCGGGTGCGAATAT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTTGTCGTGTTTG	alt_3640_reverse	85	83	100	73	84	74	79	73	78	69
GGCCAAGAGCGCATCG	alt_3640_reverse	30	28	15	32	24	27	30	20	28	20
TCAATCGACTTCATCC	alt_3640_reverse	85	76	102	102	77	89	67	74	71	68
TGTCGGGTTATTACCT	alt_3640_reverse	6	14	7	8	10	10	12	5	19	3
TGATGATAGCGTACTC	alt_3640_reverse	32	18	45	27	16	28	21	26	33	19
GTAGCGTTGCTGTTAA	alt_3640_reverse	36	31	52	43	34	33	26	51	41	33
TCCACCTGCGATAGAG	alt_3640_reverse	3	7	9	11	9	7	8	6	8	6
GTCACACAGTGTTAAC	alt_3640_reverse	124	100	141	133	124	91	120	118	144	92
TGAGCGGCGTTACGCG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGTTAGAAAGGGT	alt_3640_reverse	20	18	27	24	21	33	35	19	26	21
TTATTAGGGCCGTGAT	alt_3640_reverse	27	26	27	14	22	19	16	18	20	17
TCTCTTCAGCTGCCGG	alt_3640_reverse	40	30	54	43	31	47	30	32	40	34
GAGCTCTTCTGGTGTT	alt_3640_reverse	2	1	0	0	2	2	3	3	0	2
AAAGATGGCGCTTTTA	alt_3640_reverse	343	193	398	307	188	325	226	323	200	319
AGAATAGCCAACCCAT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTCGGCGCACTTT	alt_3640_reverse	55	40	41	39	36	32	46	37	50	43
GTATGATTGCATGATC	alt_3640_reverse	161	172	199	158	180	145	167	169	167	150
GAAGGGTTTACGTGTT	alt_3640_reverse	4	7	14	6	7	18	8	5	9	10
CGTCCCACCAGATCTA	alt_3640_reverse	25	31	41	36	19	39	21	29	24	28
TCCTTGCGGTTCGGCG	alt_3640_reverse	15	18	24	28	15	17	9	16	18	16
ATCCGCACAGGTCACA	alt_3640_reverse	19	13	25	12	20	15	12	18	21	21
CTTGGTCAGTTTCCGC	alt_3640_reverse	18	32	43	25	15	21	20	21	21	18
GTTAAGCCCGTATCGA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTTGGTGACATAC	alt_3640_reverse	6	9	9	6	9	4	6	9	10	8
TTTAGCCGACTCCTAA	alt_3640_reverse	10	6	12	12	14	14	13	10	12	9
ATTTAAGGCCCCGGTC	alt_3640_reverse	1	0	0	1	0	0	0	0	0	1
GGCACACTCTCATAAC	alt_3640_reverse	7	18	14	9	23	5	17	6	17	8
AATTGTCTTGATCGCT	alt_3640_reverse	184	142	227	193	162	175	167	182	183	184
TACTTTCATCCTTACT	alt_3640_reverse	48	34	48	43	37	26	60	27	46	48
AGAACATACATTTGCC	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGTCCACCCTGGG	alt_3640_reverse	60	69	107	75	74	86	70	65	84	64
TTCCAATTTCAGGCTA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGTGCGGCCCCAT	alt_3640_reverse	12	22	21	13	15	19	13	11	24	13
CTAGCGGGATATAACG	alt_3640_reverse	46	50	53	47	44	44	39	35	50	39
ACAAAGGCATCGGTTT	alt_3640_reverse	70	60	90	72	42	67	72	66	70	75
TGGACTGTCGTACGAG	alt_3640_reverse	75	51	86	88	66	60	82	71	87	68
GGTGCACTCTACTCAT	alt_3640_reverse	18	15	22	22	14	13	12	25	14	25
TCGCTTATTACGATTA	alt_3640_reverse	6	2	6	4	7	8	3	5	6	2
TTGACTGTGTGGCGTA	alt_3640_reverse	5	10	2	2	10	2	11	1	6	5
GATTGTAACATATTCG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCCTATCGTACAT	alt_3640_reverse	19	22	18	10	24	15	19	23	25	8
ACGGGTCTTAGGCAGT	alt_3640_reverse	38	31	35	33	37	40	40	34	40	27
TCTTTCGGAATGTTTT	alt_3640_reverse	48	44	48	57	34	29	34	46	45	39
CCGGGTCAGACTGCTC	alt_3640_reverse	23	71	34	40	62	29	73	24	77	19
GTTAGTTTACACTTTT	alt_3640_reverse	32	26	45	44	42	30	44	40	36	35
TATCTATGTCACGGGA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCACGTGATAACT	alt_3640_reverse	20	17	28	20	20	14	15	16	16	22
TCAGATTTAACTGTCA	ref_3640_reverse	443	425	557	458	485	438	505	431	469	427
AATCCAAGTACGGCAT	alt_3640_reverse	27	49	42	34	41	45	35	34	45	37
ATCTACCCTGAGAGCT	alt_3640_reverse	33	13	38	33	36	23	41	26	29	23
TTTTGGAACATCTCGA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTTTTGTGCGGTC	alt_3640_reverse	36	21	33	43	29	28	31	32	26	35
CGTCCTTAAGCGCGGA	alt_3640_reverse	30	18	50	32	21	34	31	33	26	29
AACATTGCTGGATGTG	alt_3640_reverse	133	125	164	118	143	135	149	109	138	90
GTTTTCAGGGCCTTCC	alt_3640_reverse	52	47	66	42	44	41	42	41	52	34
CATTCAGGAATTAACA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTTCATCTGAGGT	ref_3640_reverse	37	22	44	37	29	45	29	37	35	22
TATAGATTCTCTTACC	alt_3640_reverse	5	12	14	7	10	16	13	10	17	7
CCCCCCCTCCCTATCT	alt_3640_reverse	2	4	5	0	4	6	6	5	8	6
TTATGGAGCATATACC	alt_3640_reverse	166	226	251	188	218	190	196	176	226	162
GACTACTTACTTTCGT	alt_3640_reverse	9	32	14	7	30	7	21	10	21	11
GGTACTCACTGTGATG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTAAATGCATTGT	alt_3640_reverse	81	85	88	81	91	66	71	59	72	59
TCAGCGTAGATACCGC	alt_3640_reverse	9	11	11	7	17	10	4	8	12	13
GATTTGTAGAACCCAG	alt_3640_reverse	14	16	8	11	12	5	9	22	9	13
CTTTGCGGTGGGCAAG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTTAGCTGCATT	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGATAACTGTGTT	ref_3640_reverse	6	3	10	20	6	7	8	7	2	5
CCATACTCATATTCGT	alt_3640_reverse	47	63	67	47	51	40	57	55	44	29
ATGCTTGCTTGGCGTT	alt_3640_reverse	10	9	7	7	10	19	14	13	9	20
CCAACTGCTTGGCATG	alt_3640_reverse	3	5	3	1	6	5	5	2	0	2
TCTAGGTCTAGACAGA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGTCGCGGGTAAG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGGCGTATTCTG	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCAGGGCACTTGA	alt_3640_reverse	6	2	3	3	10	1	4	6	4	1
TTCTAGTTTTCTGGAC	alt_3640_reverse	3	3	5	1	8	7	8	3	4	6
AACGTCATGCGTTTCA	alt_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAGACAAATATCA	alt_3640_reverse	59	64	62	63	51	44	54	49	58	59
CTTGGGTACTTTGACC	alt_3640_reverse	29	28	32	14	24	18	24	22	37	19
CCGCTAAATGCCCATT	ref_5659_new	4	25	12	12	21	14	18	17	26	14
TCTGTGGCCGTTCGGT	ref_5659_new	26	29	39	23	41	30	43	24	41	21
GGCGGACATACGTCAC	ref_5659_new	0	0	0	0	0	0	0	0	0	0
CTTTGTACAGCGTGGG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
ACTGGGTCATGGTTGT	ref_5659_new	7	19	10	8	10	9	14	6	7	11
AGTATAAATTGACACA	ref_5659_new	18	16	14	15	27	14	19	18	17	16
CCGTACGCTCCGGCAT	ref_5659_new	0	0	0	0	0	0	0	0	0	0
AATTCAAGAGTTGACA	ref_5659_new	0	0	0	0	0	0	0	0	0	0
CCTAGAACTGCATGAA	ref_5659_new	126	219	125	120	217	119	255	101	207	124
ATCTAACGCCTTATGA	ref_5659_new	0	0	0	0	0	0	0	0	0	0
GAGTGGCAGGGGCTAC	ref_5659_new	14	18	13	2	15	10	11	9	9	6
TTACATGGTTATGTTG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
CCGGCGTTTTACGATC	ref_5659_new	0	2	3	3	7	2	4	1	6	1
CGGCCGTGACCGCGTC	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TTCATCAGATCTTAAA	ref_5659_new	10	15	11	12	24	7	23	13	20	13
CTTTTTGTTGATGTGG	ref_5659_new	16	19	15	15	30	18	27	14	30	20
CTGGACAGTAAGTTGC	ref_5659_new	3	6	1	3	3	6	4	1	11	1
TATGAGGGTTTATCAG	ref_5659_new	135	171	143	111	150	113	202	132	203	106
GGTCGAGGACTGCTCA	alt_5659_new	10	17	19	23	26	7	14	10	20	18
AATCTATCTTTCTACG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TATACTACACACATAT	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TCCAATTCAAGAACGT	ref_5659_new	0	0	0	0	0	0	0	0	0	0
GACTACGTTTCCTTGT	ref_5659_new	41	49	52	43	51	40	53	48	58	28
CCTTTCGCCAATGACT	ref_5659_new	15	28	18	17	23	20	28	16	47	17
CTAATTTACCTTGTTA	ref_5659_new	0	2	0	0	1	0	0	0	0	0
ATACCTCCCCGTCCTC	ref_5659_new	2	64	0	3	60	2	56	2	57	1
GGTCCGGGCCTGCAGT	ref_5659_new	218	293	228	215	313	194	360	178	329	180
TTTTATTATTTCGGTT	ref_5659_new	18	27	21	17	24	17	30	19	27	11
CCCACTATCCATCTAC	ref_5659_new	17	57	26	20	51	19	48	16	50	22
CAATGGTCATTAGTGT	ref_5659_new	11	28	25	8	24	20	32	20	20	10
GATATTCCACTAGAAA	ref_5659_new	6	16	13	12	13	8	9	5	15	8
TCTTATTTCCCATTTA	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TTTAAAGCGTTTGGGG	ref_5659_new	27	49	30	25	48	18	49	20	33	18
TCCTTGATCTTTCGCG	ref_5659_new	94	98	118	85	123	99	112	69	113	92
CTAATCGGAAGGAGCG	ref_5659_new	45	96	70	46	78	37	81	36	84	44
TGACTTGCCTAGTATA	alt_5659_new	0	0	0	0	0	0	0	0	0	0
CCACACAGCTTCGGCC	ref_5659_new	3	3	1	2	4	0	7	1	2	0
CGAGTACCCTGGTGAA	ref_5659_new	20	38	36	30	30	35	36	29	50	30
TAGCATTGTGCTCAAC	ref_5659_new	30	46	38	27	37	24	35	17	49	27
GGCGCCCTTATGCTTG	ref_5659_new	14	12	13	11	21	5	16	14	23	6
CCCGTGGGCGTCTAGT	ref_5659_new	83	108	100	78	127	75	143	101	137	80
CGTCCGGCATGAGAGC	ref_5659_new	20	23	21	27	38	13	21	8	28	13
GTGCCGTCCATAATTC	ref_5659_new	0	1	1	1	0	0	3	0	1	0
CGGTAAGCCTCTTCCC	ref_5659_new	0	0	0	0	0	0	0	0	0	0
GGTGATGGACGGGGCA	ref_5659_new	4	7	4	3	9	2	5	5	7	4
GCGTGTTGTGCCCACG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
GGGCAAGTCTGGTTTT	ref_5659_new	1	7	2	7	7	2	5	2	11	1
GGTATCTATCTTCAGT	ref_5659_new	4	12	5	9	7	5	9	5	6	6
ATGATAACTGCCACGG	ref_5659_new	85	133	108	78	129	81	141	84	160	76
GGCGGGAACGAGATTT	alt_5659_new	55	60	55	55	62	56	69	46	56	35
CACCCAGCATACGGCG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
CGACTAGCAGTGTTGG	ref_5659_new	25	24	17	18	21	26	37	17	29	17
TCTTTAACGTATATTT	ref_5659_new	22	40	36	39	40	34	59	32	56	24
GGTCCGGGCCAGCAGT	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TCAATGTGGCGTTGAG	ref_5659_new	12	17	17	8	30	12	16	14	34	7
AATAGTCCCGAATAGT	ref_5659_new	19	22	15	21	14	11	29	15	28	18
TCATACTCTCATGTTT	ref_5659_new	20	27	27	25	23	15	35	23	32	16
TACTTCCCCATCCTTT	ref_5659_new	8	48	17	17	47	4	34	10	46	10
TGATGATTTCGCTGCT	ref_5659_new	69	98	103	78	95	81	75	50	113	74
TTGATGGTCATGCCGG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
ATATTCCTTCTTGTAT	ref_5659_new	28	24	53	23	31	22	35	20	33	32
TAATGTATTGCGCTAA	ref_5659_new	81	114	103	71	105	61	129	70	121	57
TCGCGTTGGGCTAGCT	ref_5659_new	0	0	0	0	0	0	0	0	0	0
GAGCGACAACGCAGCG	ref_5659_new	4	9	12	5	18	11	15	21	12	13
ATATTGGTCGTATGGT	ref_5659_new	9	22	16	7	12	7	24	16	34	11
TGGTGCTAGTTCCTAT	ref_5659_new	6	10	11	3	8	9	10	4	9	7
GTTGCGTTTAGGATTC	ref_5659_new	2	4	4	2	10	3	10	3	6	10
TTAGCGGACAGAATCA	ref_5659_new	29	56	44	25	60	32	57	25	68	33
TCCTAGGCTCATTCAG	ref_5659_new	4	5	2	1	7	2	5	7	2	6
GGCTGTATGTTCCGAG	alt_5659_new	71	123	81	57	116	68	115	48	114	44
TTCCTTGGTCTAGCAG	ref_5659_new	24	23	36	27	41	26	43	26	70	21
TTGATTCCTTTTGTCC	ref_5659_new	10	14	13	5	8	5	13	4	8	7
TTCTCACGATGGCGGG	ref_5659_new	71	75	83	68	70	29	87	55	61	59
GACAGAGTACGGTCCG	ref_5659_new	13	24	20	17	15	14	28	13	16	20
TTTTTACTTGCCTGGT	ref_5659_new	2	2	9	3	5	2	6	2	9	4
GCCAAAGGATTATTGT	ref_5659_new	5	16	14	7	18	8	19	6	17	4
CGTTTGATCAGGTTAA	alt_5659_new	5	15	1	4	7	5	11	10	15	11
CAAAACCTCCCACGTC	alt_5659_new	13	34	16	16	51	10	59	13	47	14
CGTGGTGTGAATAGAG	ref_5659_new	21	32	32	25	43	34	44	22	46	17
TGTATGTTTCATGAGT	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TTCGCGTAGCTGGGTA	ref_5659_new	25	52	52	32	63	30	41	30	48	28
GCTATTATTTCTAGCG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TTTGTGGCGTAACCCT	ref_5659_new	4	7	5	12	5	4	9	7	10	8
CCAAGTCAAATCAAAT	ref_5659_new	68	110	85	64	77	47	98	41	119	67
TCGGTTGTAGGAGAAC	ref_5659_new	8	24	24	9	19	9	24	16	18	10
ATACTTAGTTTTGAAC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
TTATCGCGTCCATCTT	ref_5659_new	35	21	32	18	26	22	30	28	35	18
CTGGGTGTTTTGTGTA	ref_5659_new	4	11	5	4	10	3	14	3	18	5
AGAGGTTTTTCTGATA	ref_5659_new	14	15	16	16	19	16	19	14	29	17
TGGAATTGGAAGTGCG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
GCTTGTCATCGGGAAC	ref_5659_new	4	4	5	2	1	0	3	2	12	2
GTTGACGTGTCTGTAA	ref_5659_new	9	18	6	7	11	10	11	9	22	11
TGTGTGTAACCGAAAG	ref_5659_new	0	1	1	0	4	0	1	0	1	0
AGCTGACGCTTACGTC	ref_5659_new	31	44	30	26	50	26	43	18	59	26
CTGGTGAAGGGTGAAT	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TTGAGATAGATCCAGT	ref_5659_new	5	13	8	6	5	13	15	1	6	4
CTGTCGAGGCTTGTCC	ref_5659_new	0	0	0	0	0	0	0	0	0	0
TGCGTCGCTAGAGGCG	alt_5659_new	20	28	19	10	34	5	27	6	18	12
AGTGTGCTGTCGGTCA	ref_5659_new	0	0	0	0	0	0	0	0	0	0
CCACGGGCTAGGCCCC	ref_5659_new	0	0	0	0	0	0	0	0	0	0
ATGTCGCAGCACTGGA	ref_5659_new	19	35	21	16	36	18	28	22	28	22
AACGGTGTGATGGAAT	ref_5659_new	7	4	5	4	11	14	5	9	7	10
CTAACCCGCTTGATTC	ref_5659_new	95	239	130	124	227	108	209	107	242	82
GTCAGGGCTTTCCCGT	ref_5659_new	18	28	12	15	36	17	37	17	31	19
GTCCTAATAGACCACT	ref_5659_new	168	251	177	150	216	156	241	155	249	149
ACACCATACTTAACGG	ref_5659_new	32	29	24	37	38	23	60	18	41	26
ATAAGGCTAATCTCGT	ref_5659_new	18	24	27	25	29	19	37	13	31	10
CATTTATGTCAGCGAC	ref_5659_new	7	4	6	2	11	4	7	6	5	5
TGACGATTGGTTCCTA	ref_5659_new	19	58	21	24	46	27	57	32	54	19
ATCTTAACAGTTAAGC	alt_5659_new	212	291	236	223	338	169	360	204	376	197
GCGTTAGCTATACATG	ref_5659_new	0	0	0	0	0	0	0	0	0	0
GAATATAGCTCAGCTC	ref_5659_new	8	6	6	5	6	2	13	5	4	12
CTAAGTTTTAAAAGCA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTTAGCGATAAGC	alt_222_reverse	88	116	121	96	130	91	135	83	119	70
TTTTTCGAGCCCGCAA	alt_222_reverse	65	61	85	86	64	69	80	55	66	56
CCGTAATTAGACAACA	alt_222_reverse	42	43	69	46	46	52	68	37	59	39
GTGAGGAGCTACCCGT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CACGTGCATTTTTACA	alt_222_reverse	6	3	3	4	7	4	2	3	4	6
CCCCAAATTGAATCGC	alt_222_reverse	0	0	0	1	1	0	0	0	2	0
TTTAGAGTATGTGGAT	alt_222_reverse	19	18	13	9	9	11	15	4	16	15
CATCAGTATGGTGTTG	alt_222_reverse	2	2	3	2	10	4	3	1	4	0
ATTACCCAGCGGCAAC	alt_222_reverse	28	20	35	25	28	22	16	16	27	19
GCCGGTAGTCCGCCCT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGAGAACTCTGGC	alt_222_reverse	6	4	3	2	7	10	10	7	5	5
AGTCCGTTCCATTTGA	alt_222_reverse	66	73	84	61	99	64	107	65	98	76
CTGAAGTTGGTTCCAT	alt_222_reverse	48	34	51	35	40	39	34	31	32	33
CTACTTGCGATGTAGG	alt_222_reverse	61	68	60	42	88	60	63	46	80	36
TATAGTCTATGCGTCA	alt_222_reverse	51	71	68	43	72	49	56	43	62	30
CTAGAGTGGACATCAG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GTATTCATATATCGCC	alt_222_reverse	63	54	60	52	53	42	51	60	53	64
AGCACTTTCACCATCG	alt_222_reverse	14	10	13	17	15	14	17	9	23	13
AGAGTAATTGCGCCAG	ref_222_reverse	82	69	75	70	62	79	82	67	75	50
GTGGTGAGAAAATCGT	alt_222_reverse	69	50	53	61	55	63	50	63	55	61
GCCCCGGGGGCTGGAA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
AATGGTGTCTTCCTCG	alt_222_reverse	37	41	48	36	20	45	30	48	36	37
GTCATAGAGCGATTGT	alt_222_reverse	5	10	9	9	9	10	11	9	13	11
TCTGCGTGGTGCATGA	alt_222_reverse	30	24	19	19	21	29	19	29	39	18
CATGCCAGCGGATACT	ref_222_reverse	27	36	46	26	26	16	29	36	41	37
AAGGCGCAACTTCGTG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCATAGGAATTGC	alt_222_reverse	56	54	87	58	46	67	76	57	60	52
CGTAGTGAGACCCTAA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCCTGTTTTGGGG	alt_222_reverse	108	97	108	95	84	116	98	91	92	95
TGATACGAAACCCGTG	alt_222_reverse	67	55	47	60	50	52	42	46	54	36
GCGGTCTCGCACATTT	alt_222_reverse	96	110	118	107	105	110	112	77	113	110
CCGGGGTCTATACCTC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGGACGGGTGTTGCAT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GCATAAGTAACTATGT	alt_222_reverse	106	96	135	97	88	80	88	89	84	75
GGATCTGTGTTGCATC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCTATAACCCCTTTTC	alt_222_reverse	57	68	53	61	72	47	79	43	87	32
GGCGGGGTGGTCTGAA	alt_222_reverse	0	0	4	0	0	0	0	0	0	0
CGGCAAAGGTGTGCTC	alt_222_reverse	72	72	99	70	68	65	87	60	84	55
AGTCGGTTTCAATTCC	alt_222_reverse	44	49	69	56	46	61	45	70	63	49
GTCCCCGGCGCTTTTA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CACTATGCAAATTCCA	alt_222_reverse	42	43	74	60	46	59	60	66	57	52
CGGCCTCTTCGTCCGA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CATCCACTACCTAAAT	alt_222_reverse	7	10	6	11	4	8	17	15	13	8
AGTGCGATGTCCTATT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTTACAATTCGGT	alt_222_reverse	6	5	17	6	16	9	8	6	9	8
GATACCCAATGATGAT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCAACGTCTGTTG	alt_222_reverse	24	28	14	16	43	8	37	22	40	11
AGCGAACAACTCGCTC	alt_222_reverse	3	9	20	12	9	5	11	7	11	7
CCTTAGTGTTGTCGTT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCTTACTTATCAG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGTTTACTTGATT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCGGGTAACCTAG	alt_222_reverse	22	23	30	27	17	17	14	24	26	14
CCGCAGCAGCGTTGCC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGTTTAGCTTTGT	alt_222_reverse	4	4	3	0	4	1	3	1	3	4
TTTTGTACATCTGAGT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGAATACCTAGTT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
ATATTATGTCGTGGTT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
ACCTATCATTATCCGT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TAATCTCCATCCAATA	alt_222_reverse	20	32	33	34	26	25	32	18	32	26
GACGGGTACGTCACCA	alt_222_reverse	13	18	15	13	20	10	11	11	8	19
ACGGCTTATCATTTCA	alt_222_reverse	24	16	30	24	27	28	15	22	22	30
GCCATAAGTAATTGCT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GCACAGACTGGCGGGC	alt_222_reverse	61	64	67	59	58	63	71	56	74	42
CTTTCTTGCTCTGGGT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCATTGGTCCTGCGTA	alt_222_reverse	19	15	12	12	29	12	23	12	23	4
GTCGTGTGCGTATCAT	alt_222_reverse	109	106	115	98	113	121	119	97	122	91
GTACCGCTTGCAGTGA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTTTCTAGGCGA	ref_222_reverse	389	365	446	360	358	374	426	385	374	366
GTGATTTGATAGGTTT	alt_222_reverse	14	19	23	23	14	20	21	14	16	15
TCGCGAATGCCGTGTC	alt_222_reverse	40	38	47	47	43	31	40	31	41	42
ATCTTAGTGTCCTCGA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGTGTCCGAGCGT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGCCCTCCGGTC	alt_222_reverse	131	110	169	177	147	144	130	115	150	156
GCCTATTCCAGGAGTT	alt_222_reverse	29	23	33	15	37	23	31	30	30	22
ACGTTGTGGCTAATTC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CTTCAGAGTTCTGTCC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCCATTTGTGACA	alt_222_reverse	6	10	17	5	12	4	6	6	10	9
TACGGGCACTTGCCTC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGTAAGCGAATGG	alt_222_reverse	23	30	41	24	20	29	26	18	19	25
TCCCAGTGTCTAGCTC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GATCTCTTTAAGATCT	alt_222_reverse	7	10	18	11	14	10	14	12	19	16
CTTTGCGGGGGGATAT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CTAGAGACGCCTCTAA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGTTGGCTGCGA	alt_222_reverse	8	5	7	9	3	3	7	1	1	6
TTACAGTCTTATGTCT	alt_222_reverse	28	41	40	43	41	36	33	23	42	37
GAAGTTCAGTACTTTT	ref_222_reverse	88	70	81	83	72	81	84	93	117	60
CGGACATTTGGTCTTG	alt_222_reverse	60	78	85	73	70	68	61	67	87	68
CGATCGGCAGGCCCTG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCGTGAGCTAGTT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
ACTAATGTTACTATCG	alt_222_reverse	22	27	21	22	27	20	25	25	29	12
TCTATCACCGGTTCAA	alt_222_reverse	12	19	31	12	7	12	13	12	21	15
GTTACGTCAAAGGTCA	alt_222_reverse	24	48	44	39	41	34	32	31	35	43
TTTCAATCACAGCAAG	alt_222_reverse	113	130	121	134	115	99	117	90	122	93
GCATAGTATCTTATTC	alt_222_reverse	46	47	71	30	38	35	41	40	50	30
CATTGTCTAGCTTCGT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTCGTATACTTGG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CGCGAGATGGATGCCG	alt_222_reverse	6	7	2	7	10	3	2	5	15	1
TTTGTATTGAGGTGCT	alt_222_reverse	15	13	18	13	12	6	15	15	14	9
GCCCGTCAGCTGTGGT	alt_222_reverse	6	10	18	5	12	6	6	7	9	5
TTTGTATTGCGACAAG	alt_222_reverse	59	71	85	64	58	78	53	71	66	70
GGAGCCAACTTCCGCC	alt_222_reverse	3	7	10	4	7	6	8	6	3	8
GGAATCGTCATAGCTT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TACTCGAAGTACGAAT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGGATCGCTTGCACGA	alt_222_reverse	68	48	67	62	60	60	47	63	62	55
ACGACCGCAAAAGCTA	alt_222_reverse	55	48	63	44	57	66	52	43	45	47
CGGGATCCGACTGGAA	alt_222_reverse	7	13	15	9	15	10	20	13	14	5
TATATACCCGACTGGT	alt_222_reverse	19	27	23	33	16	19	24	15	27	7
AAGGCCTTCCTTTTGG	alt_222_reverse	6	4	6	2	2	3	3	3	4	6
TCCTCTTGCGTTAACA	alt_222_reverse	2	2	5	0	4	0	4	3	1	4
GATCGCATCAACTTTT	alt_222_reverse	66	51	72	44	56	59	53	38	51	40
CCCGTTCAGGCGACAT	alt_222_reverse	25	28	36	39	28	32	32	35	35	19
CCTGGCACTATCTCCC	alt_222_reverse	10	9	9	9	8	6	11	11	11	5
ATGACTCCTGTCGTTC	alt_222_reverse	56	35	50	46	48	46	49	46	56	38
CCTCCCACTCAATACA	alt_222_reverse	28	52	45	31	47	26	46	32	55	33
CTGTATCCCTCTGCCG	alt_222_reverse	18	9	14	8	7	11	6	10	10	6
GATTCTGGCGACTTAT	alt_222_reverse	43	36	43	51	47	43	34	35	37	27
AAGACGTGCTATTTCC	alt_222_reverse	77	67	93	84	74	67	65	52	69	76
ACGGGTGTGTCCGACG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTAGATTACCGCC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GATGTAGTTTGTCCAC	alt_222_reverse	21	35	46	32	44	28	42	14	27	35
CCTATGGATCAATAAC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGTTCATCTCTTA	alt_222_reverse	3	26	22	18	18	16	16	15	25	18
ATGAAAGTCGGTTACA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGAAATGTTTGA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTGCAGGCATACC	alt_222_reverse	10	8	13	3	2	14	9	4	11	3
ACTGGGTACCCCAGAG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
AATTCTTAGAAGTTGG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GGACCTAAACATTGTC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CTGCAAATTTTTTGAG	alt_222_reverse	27	38	42	45	48	32	55	33	36	31
CTTTAGACTGGCGGCA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CATCGCCCAAACCTTT	alt_222_reverse	8	6	5	7	8	4	9	3	5	3
GCAACTAGGTGAATGG	alt_222_reverse	14	15	24	15	14	14	17	9	11	14
CGAACACTGGATGTTC	alt_222_reverse	56	51	57	44	43	38	71	34	49	39
ATTTTTGCACCTGAGG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
AAGTCGTCTACTTCGT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCCTATCATTGGATTA	alt_222_reverse	3	4	2	4	6	5	4	3	3	6
AAAGAGATCAAGTCGA	alt_222_reverse	1	2	0	1	3	3	1	0	0	0
CGCCGATCCCAAACGG	alt_222_reverse	21	32	30	23	24	27	21	24	24	30
TTCTTACACCGTTTTC	alt_222_reverse	17	16	20	19	8	16	15	21	16	15
AGACCCTCACACACCA	alt_222_reverse	29	41	28	29	29	36	30	29	34	29
ATCGGAAGATCGCCCT	alt_222_reverse	42	42	51	48	46	26	52	43	54	46
TTTCCGATTTGTTCAT	alt_222_reverse	38	23	31	16	30	24	35	39	42	20
TAAACAATGGTGCCGG	alt_222_reverse	108	81	101	96	87	62	83	68	76	96
TTCCTTGCTGTCACTC	alt_222_reverse	19	26	35	26	34	22	30	26	33	31
GTGGCTTGGGGTGTTC	alt_222_reverse	2	5	10	13	3	10	8	8	13	5
TTTCTAGTCCCGGTGC	alt_222_reverse	197	233	235	186	232	149	240	192	241	190
TCTGTGGGACCTAGTA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCGCCTTATAGTG	alt_222_reverse	11	20	25	8	15	14	10	10	15	8
CTTACACGTGATTGTA	alt_222_reverse	2	8	10	6	8	8	1	6	4	2
TGTCCCCTTCATATAT	alt_222_reverse	15	26	18	20	29	11	17	17	20	13
CGAAGACGGGGTCTGA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
ATGTAAGATAAATATC	alt_222_reverse	9	9	12	5	7	6	10	6	5	6
ATGAGTTGTACACTCG	alt_222_reverse	25	16	25	16	26	13	27	23	39	20
TGCTCTGACCTCACTT	alt_222_reverse	88	85	98	81	96	96	82	94	102	94
CAACGCACGGTTTCCT	alt_222_reverse	11	15	14	9	12	10	9	8	14	8
ACTTATTCGACCGGCT	alt_222_reverse	8	25	6	3	17	3	11	2	16	3
AGCGTAGCTCACGACC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTACAGTCTTAG	alt_222_reverse	11	22	29	17	19	10	20	11	17	14
TCTAACCTCCACAGAT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTCTGCGAGACAC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGACGGTGTATGGGCC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTATGACACTTAT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGAGCTCGCTTAT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
AGATCATTGCGTGGTT	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TAAGATTAAACTATAA	alt_222_reverse	4	12	5	4	2	6	3	3	9	3
CTCCAGGTGATTACTG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTAGTAGTGGTCG	alt_222_reverse	24	15	31	30	17	12	17	17	20	17
TATCTAGTCCCGGTGC	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTTATGGTTCAGG	alt_222_reverse	57	42	57	58	39	57	40	46	46	44
TACGCTAAGGTTAATG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TGTAAGATCATTGTCC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTTAGATGTACAT	alt_222_reverse	24	25	23	17	14	13	17	11	18	13
TTTAGACGTAGAGAAT	alt_222_reverse	19	34	14	19	22	21	26	12	27	18
CATCTGGCCCGGGCAT	alt_222_reverse	26	14	14	12	9	15	20	8	15	17
AGGGCAGAGGCGTCCA	alt_222_reverse	25	27	35	34	31	23	29	16	27	30
AGGTACTCCCCACAAA	alt_222_reverse	49	126	71	69	108	44	127	85	157	54
GGTAAGGTTTCAGCGT	alt_222_reverse	18	17	22	18	10	20	19	14	17	13
ATTGTCCTTTTTATCA	alt_222_reverse	80	99	96	83	91	79	93	83	100	74
CCAGGCCAGCCCGAAC	alt_222_reverse	30	41	34	28	33	25	22	23	43	39
TTGGTATCAGGGTAGC	alt_222_reverse	8	8	8	11	16	7	12	5	8	6
CTTTTAGGCTTTTTAC	alt_222_reverse	35	32	41	31	26	24	39	21	37	27
GACCGAGTTGATTACA	alt_222_reverse	123	111	142	138	108	118	137	137	135	125
ACCAAGATGATCCCCG	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGCCATCGTCGTA	alt_222_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGTAATAGGTGA	alt_222_reverse	52	42	41	45	39	33	33	46	46	52
CTAACAGAATTTAACG	alt_222_reverse	9	15	11	13	7	7	15	13	12	10
TGCATTCTTCGTGTCC	alt_222_reverse	106	75	117	118	83	112	127	74	94	92
ATTACTACCGTCCCTT	alt_222_reverse	6	8	13	12	9	6	6	5	10	7
TCATACTACTGAGGTA	alt_222_reverse	46	46	48	48	47	66	39	52	49	43
TGTACGGTCCCGGGAT	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCGTGCCTTTATT	alt_4446_reverse	40	62	43	42	59	37	75	40	79	29
TATGGCTCCGGGAATG	alt_4446_reverse	24	34	53	43	29	29	34	29	40	36
GTTTGCGCTGGAGTAA	alt_4446_reverse	2	1	0	0	2	1	0	1	0	1
CGCTAACCTTAATATT	alt_4446_reverse	17	42	18	20	36	11	30	14	23	16
GCACTGGCGGTTTGGC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GTATGAGTCTACTCTA	alt_4446_reverse	1	0	0	1	3	2	2	1	1	0
TTGGCCATCTCGCTCT	alt_4446_reverse	8	16	10	13	18	9	20	13	18	5
TTGTTCATGAGCGCTC	alt_4446_reverse	94	137	92	70	95	79	97	92	104	82
CTGCTTTGCGAATCCG	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
AGGCACATTATATCGA	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCAATAGTGGATA	alt_4446_reverse	17	36	24	17	27	25	25	23	27	12
CAGCTCATCCGAATGG	alt_4446_reverse	18	31	24	9	29	22	32	12	41	14
GCTAAAAACCGATTTG	alt_4446_reverse	39	48	46	38	32	42	58	40	65	38
GATTCCCGGCATGGCC	alt_4446_reverse	45	59	40	48	68	38	68	47	75	29
CAGTATGCCGTGGAAA	alt_4446_reverse	76	96	97	68	119	72	97	66	123	55
AGCCCTAGCACGTTAG	alt_4446_reverse	87	175	105	120	172	106	187	87	187	77
CTTTGGGCATTACCGC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTAGTGAATTTAA	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTGGGGTTTCGCG	alt_4446_reverse	11	22	17	8	20	20	20	9	11	13
CGCAACCGTCACTACA	alt_4446_reverse	29	106	45	51	77	31	99	42	97	47
GGAAGCACCCCGCACA	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTCACGTTTTAGC	alt_4446_reverse	9	3	3	6	7	4	8	6	11	8
AGTCAGTATTATGTAG	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
ACATTTTATTAGTAGG	alt_4446_reverse	6	13	9	6	8	6	5	7	9	7
TATCTCACGTGTACTC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
CGCACTGCCTCAATCA	alt_4446_reverse	58	68	67	63	71	43	59	55	79	57
TGACTGCGAGCTGTCA	alt_4446_reverse	30	51	43	29	69	35	50	29	55	34
TCTATTTAATTCCATC	alt_4446_reverse	21	31	25	17	21	22	43	18	25	20
TTCTCGAATCGGATCT	alt_4446_reverse	36	48	44	34	49	25	48	31	41	24
TTTCAGGGATATGTGG	alt_4446_reverse	16	29	25	26	38	22	24	18	35	19
AAGCCTCTATTAGCCG	alt_4446_reverse	20	29	27	25	22	15	39	26	39	19
GTACTACAAAAATATC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGAAGTAATCTCC	alt_4446_reverse	25	37	52	27	34	23	41	33	43	27
TTTAGTGCGGTCACGC	alt_4446_reverse	15	19	18	19	21	12	12	16	23	7
TGTTGTCAACAATGTC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
AGATTTTCTGCCACCT	alt_4446_reverse	3	6	3	5	5	4	2	3	3	8
GGATACCCACTCTGTA	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
CCATCCGCTAACTCTG	alt_4446_reverse	6	24	8	4	18	6	35	4	18	4
TTTGGAGGCCCTTATA	alt_4446_reverse	31	56	48	37	54	38	47	33	63	36
GTGGCTTTTATCTTCC	alt_4446_reverse	25	24	25	18	39	16	18	22	24	23
CTTTGATGATACTTTA	alt_4446_reverse	5	9	12	11	10	13	6	7	9	5
TATCGCGGTTCGAACT	alt_4446_reverse	31	37	36	19	31	18	33	22	30	16
CCAGGATTGTTATCAC	alt_4446_reverse	14	26	11	22	25	24	29	13	27	20
TCCTAGATTAGACTTT	alt_4446_reverse	25	37	30	31	57	23	37	32	41	15
TCGTTCATTTTCTAGA	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCAGCGATGCTAC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
ACGTATTTTATGCATT	alt_4446_reverse	64	56	53	32	69	38	66	58	68	38
TTAACGGGAAGAGGGT	alt_4446_reverse	14	30	24	19	30	17	28	15	17	15
GCTGTTTCCTCACCCT	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GCCTACCACTTCCCGC	alt_4446_reverse	3	5	4	3	9	6	9	6	9	9
TTCTAATAATTATGGC	alt_4446_reverse	53	66	51	58	66	50	60	56	88	34
GCGACCATGGCCTGTC	alt_4446_reverse	7	5	10	7	13	8	4	8	7	8
GCGGCTGGTAAAGATG	alt_4446_reverse	28	42	17	23	26	25	46	17	24	17
TCCAAGGAGTTGGGTG	alt_4446_reverse	37	66	32	36	55	43	60	34	56	26
ACGATCCTGGGCAGGC	alt_4446_reverse	8	18	10	14	12	18	18	9	21	4
CTTGGGAGTGAATTTC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTTGGAGCAAGG	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
GTCTAATGCTTTTCGA	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTCCGGTGTTAG	alt_4446_reverse	22	39	26	28	38	24	20	23	42	30
GAGCGGTATCCTGTCC	alt_4446_reverse	3	3	5	3	5	3	8	4	2	3
TCTCTCGACCGCTGTA	alt_4446_reverse	5	21	20	10	23	18	26	4	26	3
CCGGCATTCTATACGT	alt_4446_reverse	55	103	102	47	83	61	97	54	119	48
ATCGGGATCGCACGCA	alt_4446_reverse	85	126	87	62	109	79	119	88	102	74
TGTTGCATCCGCATAG	alt_4446_reverse	36	47	29	34	40	26	51	25	51	22
CTCTAACTTTAGACTA	alt_4446_reverse	18	28	19	23	11	14	14	14	18	12
CTGTCTACTCTATATT	alt_4446_reverse	9	14	13	7	10	6	12	8	6	9
GTGTAACATCCAGGCT	alt_4446_reverse	11	15	12	17	19	9	14	14	20	9
CTAGGAGCATATATGA	alt_4446_reverse	2	2	1	1	1	0	7	2	1	3
GGTTCGGTGCGTACGC	alt_4446_reverse	27	37	26	21	35	24	36	24	28	20
GGTATGTAATTTAGGC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGGGGCTTAAGGT	alt_4446_reverse	22	39	26	18	38	17	28	23	39	26
CTATCTTGTTGTGCTC	alt_4446_reverse	14	17	25	24	27	20	29	8	31	6
ATTAGGCTCTAAGTCC	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGCATTGCTGATG	alt_4446_reverse	39	54	39	30	43	30	51	31	62	35
GGTATATCTTGATCGC	alt_4446_reverse	23	35	32	40	41	32	45	18	37	23
AGATGCATGATGTCGA	alt_4446_reverse	196	220	222	209	179	206	221	169	245	175
TGCCACTGTGAGATCT	alt_4446_reverse	29	50	34	28	43	31	46	27	49	25
TAAGCTTGAAGTATTG	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GCTGAGACATTATGGT	alt_4446_reverse	14	24	24	22	21	19	16	12	27	21
AATTCGGGGTTACTCG	alt_4446_reverse	33	20	20	29	29	18	37	22	21	20
CTACATGATGTCACGG	alt_4446_reverse	15	27	13	10	19	13	13	16	17	14
TCACGACTGTTAATTT	alt_4446_reverse	11	8	11	9	7	7	11	6	12	8
GGCTTCTAGGAGTCTC	alt_4446_reverse	11	11	14	16	8	14	11	10	13	11
GCGATGGACCCCTAGT	alt_4446_reverse	82	106	79	72	100	86	97	75	124	51
TAAATAAGCTACATGA	alt_4446_reverse	24	36	44	36	28	38	50	31	45	23
GTTATGTACTCTCCGA	alt_4446_reverse	5	13	8	7	11	4	16	11	14	8
CCGGGCCTTCGTAGCC	alt_4446_reverse	0	4	1	0	1	0	0	0	0	0
TATATGAAGCTTTTAC	alt_4446_reverse	18	33	31	19	38	19	43	23	38	19
TGTTGGCTTATGTCTT	alt_4446_reverse	15	20	23	18	22	22	17	11	16	11
AGTCAGGTAAAGGCGA	alt_4446_reverse	22	54	41	29	51	29	73	35	63	28
TTCGGCCTAGACATAA	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGTATTAACTGCT	alt_4446_reverse	0	0	0	0	0	0	0	0	0	0
GTACTTACGCTGCCTG	ref_5873_new	25	37	24	26	63	22	61	13	60	16
GTAACTTTTTGTAGTC	alt_5873_new	0	0	0	0	0	0	0	0	0	0
CGTCATACGCTCGGAA	alt_5873_new	35	55	42	32	55	24	42	34	35	31
ACAGCCATAGTGCAGA	alt_5873_new	0	0	0	0	0	0	0	0	0	0
AAAATGGTTTTTGCAG	alt_5873_new	1	3	3	3	1	4	3	1	7	3
CGCATTTGGCCACACT	alt_5873_new	7	9	4	12	13	5	20	11	16	5
TCCCCCTAAAGCCCAG	alt_5873_new	4	7	0	4	8	3	15	1	10	3
GATGGCCGGCTTTGCG	alt_5873_new	6	13	9	8	7	8	6	11	6	10
TTCCTCAATTTACACC	alt_5873_new	1	3	1	0	2	1	1	2	2	1
GCCTGGTTTGTCATTT	alt_5873_new	25	39	29	31	46	34	41	25	48	18
CAGCATGACCTGGCTA	alt_5873_new	12	13	12	7	22	14	15	10	16	8
ATGGGGTGTGAGTCGG	alt_5873_new	18	30	18	10	29	12	29	17	36	15
CTTCTTCGGAGCCGCA	alt_5873_new	0	0	0	0	0	0	0	0	0	0
AGTACCACGTGGACAA	alt_5873_new	0	3	1	1	0	0	1	0	1	0
GCAGTTTTACCTCCAT	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TATGCGGTCGTATCCG	alt_5873_new	10	13	6	4	14	6	11	9	16	6
TTACCACACGTGGATC	alt_5873_new	9	10	11	9	24	13	17	9	10	16
CGACCTGCACGAAGGT	alt_5873_new	27	48	40	22	65	29	63	22	72	33
TACTTCACCCGAGTAT	ref_5873_new	141	218	161	146	242	135	239	137	225	118
ACCACAGCATTCAATA	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TCCGATGCTCTTTGTT	alt_5873_new	9	12	7	8	19	12	14	8	11	8
TCAGCTAACCTTCTCC	alt_5873_new	7	6	3	5	9	11	6	9	16	3
ACCCACTATCCTGAGA	alt_5873_new	10	8	14	9	9	10	8	6	13	16
TATATTTGAGTTACAA	ref_5873_new	29	73	47	42	53	38	64	36	48	26
ACTGTACGTTTTCTTT	alt_5873_new	0	0	0	0	0	0	0	0	0	0
CTGCCCACCTCAATGC	alt_5873_new	1	9	2	4	11	1	26	3	24	1
TTAAGCTTTTTAAGCT	alt_5873_new	0	2	2	1	2	1	4	1	5	0
GACTATCGCCTTCGCA	alt_5873_new	0	0	0	0	0	0	0	0	0	0
AGGGTTCAGACTTTGC	alt_5873_new	15	33	18	29	26	15	19	19	29	18
TAATACGAAGGAGTTC	alt_5873_new	9	18	12	11	8	4	14	6	16	6
TCCATATTTTGTGGCA	alt_5873_new	52	92	57	44	69	38	75	38	87	27
TCGGCATGTGGCGCGC	alt_5873_new	19	16	13	19	12	16	13	10	21	13
GCTTTTTGTAATAGTT	alt_5873_new	13	19	18	12	35	13	23	8	18	13
CATCAACGGACGTAAC	alt_5873_new	2	0	2	1	2	0	1	2	3	2
GTGCCAAGGCAGAGTT	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TGCTTGTCAACAATCT	alt_5873_new	0	0	0	0	0	0	0	0	0	0
ATCTCACTTTACGGCG	alt_5873_new	6	7	15	11	16	6	12	10	13	8
TTCCTCAATTTACAAC	alt_5873_new	301	373	326	272	382	252	441	272	397	225
TGTGTTGGATTCGTTC	alt_5873_new	5	3	2	4	5	4	10	4	7	4
TCGTTATTGGAAAAGC	alt_5873_new	27	53	39	37	48	23	58	22	47	23
GCTATCATAATTTTGT	alt_5873_new	3	16	5	9	10	6	16	4	15	4
TTTTAGAAGCCGACTG	alt_5873_new	7	12	13	9	9	6	15	7	7	7
GCCCGGATCGGGATTT	alt_5873_new	0	0	0	0	0	0	0	0	0	0
GAAAGCTCTGCTCTCC	alt_5873_new	7	14	12	19	24	9	14	13	18	16
TCTGTATATGTAATAG	alt_5873_new	0	8	5	2	12	5	8	4	9	9
TAAATTAGCATCCTGT	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TTTGCGACCGTCGTCT	alt_5873_new	50	65	51	55	92	44	66	37	71	53
TTTTGAATAGTAAATC	alt_5873_new	11	18	7	9	20	9	17	12	7	8
TTTCTGTCTTTAATTC	alt_5873_new	37	52	57	50	64	34	48	21	63	50
TGCCTGAACAGCTTCT	alt_5873_new	12	24	12	21	26	17	18	19	23	21
CTTTATTCAAGAGGTA	alt_5873_new	17	32	12	23	35	24	41	16	30	23
GTATTCTTCGGGTTGT	alt_5873_new	39	64	67	45	67	43	66	43	87	39
TGTGCGGTAGTTGAGG	alt_5873_new	13	31	24	20	27	17	40	8	25	18
AGCTCTACTCCTCTTT	alt_5873_new	24	30	21	17	46	15	39	21	37	9
AACCCTTTGAACCATG	alt_5873_new	0	0	0	0	0	0	0	0	0	0
AGGATTAAGGTTGGAT	alt_5873_new	9	16	22	12	23	20	17	15	21	12
TAAGGATGCTTGCGAA	alt_5873_new	29	75	46	42	63	46	76	33	90	34
GAAGTTTTTTATCCAA	ref_5873_new	4	16	12	9	8	6	9	4	15	7
TACCTCAATTTACAAC	alt_5873_new	0	0	0	1	0	0	0	0	0	0
CACTGGTTGGTCACAT	ref_5873_new	0	0	0	0	0	0	0	0	0	0
TACTCAAAAGGCCCCA	alt_5873_new	0	0	0	0	0	0	0	0	0	0
CGGAATACTACTCTCG	alt_5873_new	14	20	7	10	17	8	23	13	13	12
CTTCTACTTGTCACCA	ref_5873_new	75	129	94	88	116	57	125	77	150	58
GCCTCAGTCGATCTCG	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TTTTACTTTATCAAAA	alt_5873_new	31	67	59	27	65	26	73	30	81	32
TGAGCGATAGTTGAAA	alt_5873_new	0	0	0	0	0	0	0	0	0	0
CAATTATTCCAGGTCG	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TTCAATTAGCCCCATC	alt_5873_new	17	19	15	11	27	15	21	19	21	12
AGACTGGCGAATGGTG	alt_5873_new	0	0	0	0	0	0	0	0	0	0
GGTTGCGGCTGCTCTG	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TGCGACTGACGCCTTT	alt_5873_new	21	28	23	11	36	13	33	12	25	14
TTCGTAATGTTCGGGG	ref_5873_new	15	20	23	17	19	22	31	17	25	12
CCGTCCTCATGCTGAG	alt_5873_new	1	6	3	9	4	2	16	3	8	3
TGTATATCGATCGGCA	alt_5873_new	14	28	23	17	22	16	28	16	28	19
GTCTTTACGCTCTCAT	alt_5873_new	39	85	55	52	92	46	88	52	95	39
ACACCGGGGGCCATGT	alt_5873_new	10	4	9	8	12	3	7	4	13	13
TGTAAGCACAAGTTTA	alt_5873_new	0	0	0	0	0	0	0	0	0	0
GTATCATCTTTTCATT	alt_5873_new	26	43	40	32	32	27	55	23	34	32
TATTTACGGGTATGTC	alt_5873_new	23	22	29	25	31	17	29	12	38	18
TCCAGCCCTAGCGAAC	alt_5873_new	1	4	4	1	11	3	8	0	4	5
GTCTTTGGCGACCACG	alt_5873_new	0	1	1	1	1	0	0	0	1	0
TACCCCCAGCCTAAAG	alt_5873_new	0	0	0	0	0	0	0	0	0	0
TAAGCTTCTTAGAACG	alt_5873_new	37	59	38	28	75	30	96	29	77	32
CGTGTTTGATACATCT	alt_5873_new	11	11	19	8	22	5	15	16	23	5
ATGCCGCTTGCCGCTA	alt_5873_new	9	9	11	14	7	4	19	9	9	9
AGACGCCCACCTGTAC	alt_5873_new	0	0	0	0	0	0	0	0	0	0
CCTTGTCTATTTATTA	alt_548_RC	131	61	159	114	87	106	84	109	84	122
ACAGCATAGTGTGGCA	alt_548_RC	28	17	26	20	6	17	12	26	21	16
GGCATAACACTCTGTT	alt_548_RC	0	0	0	0	0	0	0	0	0	0
AACGGTCCACCAGGTT	alt_548_RC	15	12	25	23	20	21	15	24	15	20
CCTCCAGGCTGTAGGG	alt_548_RC	63	45	70	70	65	71	45	62	58	71
TCTAATGGATTCGCCA	alt_548_RC	0	0	0	0	0	0	0	0	0	0
TGTGATGCGCCTCTCG	alt_548_RC	121	77	121	132	75	102	81	130	65	97
ATCGATCATTCCTGGG	alt_548_RC	112	52	108	123	55	86	52	96	62	80
TGCCGCATGTACTAAT	alt_548_RC	71	58	125	106	63	92	77	90	79	89
GTGTTACATTATTGTT	alt_548_RC	72	45	87	77	52	72	38	69	44	54
ACACAGATGATACTAT	ref_5928_new	20	25	16	17	23	19	26	22	28	17
TGTGCTCCTACCTATT	ref_5928_new	121	185	125	114	197	95	189	130	175	106
ACCATGTTTTGAGATT	ref_5928_new	83	83	100	76	112	66	102	71	119	51
GAAGCAGGATACCTCT	ref_5928_new	10	15	4	8	12	3	18	15	16	10
CATCCTGCACACCTTT	ref_5928_new	3	5	4	3	12	4	14	2	7	6
CGTGGTCAGGTTCTTC	ref_5928_new	0	0	0	0	0	0	0	0	0	0
GTAGGGTGTGAAGATG	ref_5928_new	21	27	24	20	41	18	40	28	49	17
GCCCACCTTTTTTCCA	ref_5928_new	2	4	6	8	11	4	10	6	13	4
AAGGGTGCTATTTGTT	ref_5928_new	57	100	79	80	108	77	108	60	101	45
TGTATGTGGCAACAGT	ref_5928_new	0	0	0	0	0	0	0	0	0	0
GACAGCATCGCTGCCA	ref_5928_new	0	0	0	4	1	4	5	5	1	3
AGCGAAATTAACGTCT	ref_5928_new	4	7	4	0	8	4	12	2	9	4
TCGTAGGTTAACTTAG	ref_5928_new	35	32	33	28	30	22	48	27	42	21
CATACACTGTGGATTG	ref_5928_new	0	0	0	0	0	0	0	0	0	0
CGCTAAGTAGTGGACG	ref_5928_new	47	67	49	44	52	39	59	36	56	48
TCCTAGGTTCATTAAG	ref_5928_new	0	0	0	0	0	0	0	0	0	0
ATATTGAATAACTCAC	ref_5928_new	0	0	0	0	0	0	0	0	0	0
TCGGGACCGGTCGCTC	ref_5928_new	6	4	4	2	7	10	11	5	6	4
ATCTATTGAGGATTCC	ref_5928_new	22	32	26	19	22	21	14	17	25	21
TAGCTGGGCTCTAAAA	ref_5928_new	0	0	0	0	0	0	0	0	0	0
TTTCACATGCTGGTAG	ref_5928_new	9	21	24	19	23	16	32	19	17	16
GCAGCGCCTCAGATCG	ref_5928_new	0	0	0	0	0	0	0	0	0	0
TATCATCACACCTGAA	ref_5928_new	79	76	68	58	65	59	84	48	65	65
TCCGTGATGCATCATT	ref_5928_new	0	0	0	0	0	0	0	0	0	0
ACCTTGAGCCAAACTT	ref_5928_new	34	36	34	47	36	33	44	33	50	29
TATGAGGATACTATTC	ref_5928_new	45	51	52	46	53	38	56	46	50	40
TGTTCCTTGGGGTTGT	ref_5928_new	5	3	4	4	5	4	9	1	5	5
TATTGTTTCCTACGTC	ref_5928_new	4	10	5	3	11	6	4	4	7	4
GTTTTTCGCGCTTTTC	ref_5928_new	9	11	16	5	11	7	11	11	5	15
GTATCATGGCCAACGC	ref_5928_new	22	17	21	32	25	21	34	22	29	15
TCTTTGTGTAAATGTT	ref_5928_new	11	11	12	11	4	5	7	10	21	3
CCGGTTATTGAGTGCA	ref_5928_new	21	29	19	24	23	26	42	13	49	15
GCGCTGGTTTGCTATC	ref_5928_new	41	71	60	55	52	37	86	35	65	32
TACATCCGTTCGGGTG	ref_5928_new	36	36	52	32	45	24	54	31	55	24
CGCCGGCCATCTGACC	ref_5928_new	24	27	35	20	19	30	32	16	32	26
TATTGTCAACGAGCCA	ref_5928_new	19	19	16	26	30	15	35	19	40	16
CAGATCGCAACTCAAC	ref_5928_new	0	0	0	0	0	0	0	0	0	0
ATCCTCTAGAACAGTT	ref_5928_new	0	0	0	0	0	0	0	0	0	0
TTGGCCGATGCATCAA	ref_5928_new	35	53	35	31	42	30	44	32	48	36
TAACATTCTATGCTGA	ref_5928_new	17	24	20	16	28	16	25	10	27	17
TCTCATGCCCGCCGTT	ref_5928_new	48	54	63	54	68	56	63	47	74	43
CGCTCGTTGAATTCTT	ref_5928_new	3	5	14	11	6	3	4	10	5	9
TCATTTCTGGGTCACA	ref_5928_new	11	19	9	11	10	11	14	6	9	5
CTGTGACTAGGTAGCG	ref_5928_new	43	72	53	48	61	52	93	50	81	37
TGAACGGTTAGCATGT	ref_5928_new	14	10	16	17	23	15	17	13	19	9
CAAGGCGCTAGGCCCC	ref_5928_new	23	29	19	16	20	15	36	13	27	13
CGTCTGGACCCCTACT	ref_5928_new	38	37	46	51	42	40	48	43	53	36
CACTCTGGACGCTGAT	ref_5928_new	14	18	22	5	24	6	12	10	19	8
CTCTACGTTTGTAAGG	ref_5928_new	19	22	25	23	35	22	18	22	28	18
TCAATACAGTCTGAAC	ref_5928_new	7	16	14	8	24	21	16	9	23	6
TGTTAATTACTGAAGC	ref_5928_new	7	16	16	17	21	14	9	8	13	11
CTTCACGCGAGACGCT	ref_5928_new	0	0	0	0	0	0	0	0	0	0
ATTTCCTGACGAGACG	ref_5928_new	16	15	15	12	20	10	19	12	17	13
GCTCAGTCTTAATTGC	ref_5928_new	0	0	0	0	0	0	0	0	0	0
GCTTTAGTTCTGGAGG	ref_5928_new	54	115	83	61	112	64	129	70	111	58
CACAAACGTTCGCTAA	ref_5928_new	20	29	22	23	50	27	28	22	40	11
GTCCCGCTTCGATTCA	ref_5928_new	19	14	14	15	18	12	15	11	21	12
TACCATGTCCTTCCCT	ref_5928_new	19	24	26	21	11	14	16	9	35	20
GTTGCGACTTTGTAAC	ref_5928_new	8	13	9	10	15	7	16	7	20	6
TCTGTTATCGTCTCCT	ref_5928_new	36	43	55	47	55	49	48	40	56	28
TTGAGAAATGACGGAG	ref_5928_new	4	4	8	6	5	3	8	4	1	2
TATCGGACCCGGATAG	ref_5928_new	84	84	100	68	113	76	94	79	94	67
CTCACACACAGGGGTT	ref_5928_new	0	0	0	0	0	0	0	0	0	0
AATGCCCTGGCCCAGC	ref_5928_new	21	19	29	24	32	27	34	26	44	20
CATAGCTAGGACTTTC	ref_5974_new	23	37	43	29	42	20	42	24	43	33
GATGTTGTGGCCCAGC	ref_5974_new	19	25	36	23	29	20	30	12	26	15
TTAGAAGTTTTACCCG	ref_5974_new	113	124	152	101	140	99	122	111	158	93
GCGCGATCATGGGTGT	ref_5974_new	56	57	56	55	55	43	77	55	76	47
TCGCATCTCCTGATAT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
TGACTCCTCGTCCCCA	ref_5974_new	3	10	2	4	17	2	8	1	8	2
CCCCGCAATAATGCCC	ref_5974_new	0	0	0	0	0	0	0	0	0	0
GTCCATTTGGGTCATT	ref_5974_new	19	23	22	16	22	17	14	16	30	9
CGTGGGCAACCTGTTT	ref_5974_new	37	54	51	44	52	48	68	46	60	38
TGGCTTTCAGTGTGCT	ref_5974_new	37	69	46	30	72	40	64	51	67	30
GCCGTTACTTTTCTGC	ref_5974_new	0	0	0	0	0	0	0	0	0	0
GTAGTGCAACGGTTTG	ref_5974_new	11	26	19	10	28	9	20	10	25	13
GTTCCACCTAGCATTT	ref_5974_new	1	3	2	2	1	1	1	3	3	1
GCTACGACCCCACCTG	ref_5974_new	48	33	47	27	59	39	64	46	31	17
GCTCCATGACTCACTT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
CTTGGAAGGTCATTAC	ref_5974_new	157	216	208	147	217	172	220	151	235	133
TGACAGAAAGGTGCGC	ref_5974_new	10	12	24	27	32	17	31	16	34	20
CTCATACGGGGCCAGA	ref_5974_new	6	9	8	5	4	4	5	5	11	6
TCATAATGAAATCATT	ref_5974_new	42	49	39	58	45	32	64	52	66	32
ACCGCTTATGTAGTTT	ref_5974_new	63	85	69	59	87	54	76	47	105	47
TATACGATAGTGGTCT	ref_5974_new	16	27	12	9	22	9	15	15	27	6
ATTCAGTACATTACAT	ref_5974_new	57	50	75	53	79	60	82	42	96	56
CTAAATAAAGGCGGGC	ref_5974_new	14	10	10	12	22	14	12	12	16	9
ATTCATACCCTCACTT	ref_5974_new	1	1	3	2	4	3	1	2	1	1
GGTGGTTGCTCTCTTT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
ACATAGAAAAGACCCT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
AAATACGATGTTTCCT	ref_5974_new	10	12	12	9	22	14	16	12	12	8
ATAAGTGAACGCAACC	ref_5974_new	17	27	26	18	25	20	20	8	34	10
GGGCTCACGATGCCAC	ref_5974_new	25	26	27	31	39	32	32	27	38	23
TGTTGGTTGCCGTGGC	ref_5974_new	0	0	0	0	0	0	0	0	0	0
TGAACCGCAAACCAAA	ref_5974_new	41	46	46	40	47	50	48	39	56	37
CAAGGTTCGCGGTTCG	ref_5974_new	7	12	7	4	9	4	8	13	10	7
TATCATTTATTGTACA	ref_5974_new	25	52	45	29	31	23	52	21	33	29
GTGCCGCCCATTGGCT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
TCTCAAGTTTGTCCAA	ref_5974_new	0	0	0	0	0	0	0	0	0	0
TACCGGGTGATGGTTT	ref_5974_new	13	13	10	22	20	6	22	11	24	13
CTTCCATAGTATTCTG	ref_5974_new	28	29	35	34	28	25	46	21	49	31
CGTACAATTGATGCCC	ref_5974_new	21	41	29	25	35	20	32	21	27	11
GGCAAAAGGCAGATTC	ref_5974_new	3	10	8	9	2	3	11	6	11	6
TAATACTCTCTCCGCC	ref_5974_new	20	38	32	21	33	20	38	24	20	18
TCCGCTATACTGCAGA	ref_5974_new	10	30	15	16	24	9	32	15	22	11
TCGATCAGTGGGTTTG	ref_5974_new	59	122	85	77	114	63	122	52	113	61
CCCTGATCTTACGGGT	ref_5974_new	5	9	7	7	10	5	5	2	7	7
TTCATGTGTTGTTCTG	ref_5974_new	0	0	0	0	0	0	0	0	0	0
GAAGTTCTTCTCAGTC	ref_5974_new	25	19	31	24	35	14	41	24	38	27
CAATCGATAGTTAAAG	ref_5974_new	42	57	38	47	56	42	51	43	59	38
TGGTGGTGCCCCAGGG	ref_5974_new	1	4	2	0	1	2	2	3	4	0
GCGGGGCGTCCGAACG	ref_5974_new	28	31	22	35	31	23	38	24	31	27
ATCTATTGCTTTGTGT	ref_5974_new	3	6	1	6	7	4	8	1	6	1
TCTGGCCTGTCCGTTT	ref_5974_new	1	0	0	1	1	0	0	0	3	0
GATCTGATTTCCGTTT	ref_5974_new	103	109	128	116	97	97	109	119	106	106
GAGCCGGTTCTTTACT	ref_5974_new	23	21	22	18	31	19	23	15	24	19
CTAATGTTGACTTTGA	ref_5974_new	59	75	63	39	63	46	68	53	83	48
GCGTCTCGTTGACTTC	ref_5974_new	74	68	64	58	89	51	91	48	75	37
TCCGCACGGTTATCTA	ref_5974_new	35	44	49	43	62	36	72	30	54	42
CCATGGCTTAATATAC	ref_5974_new	5	14	14	7	15	6	16	9	15	13
CCCCGTAGCCACCGGC	ref_5974_new	27	56	22	30	59	21	79	13	78	24
GCATCGGTTCACGGTA	ref_5974_new	8	15	6	8	14	8	18	8	12	5
CCATGTCGGCTATTCT	ref_5974_new	105	107	106	91	94	104	123	84	115	90
ACATTCAACTCAACGA	ref_5974_new	8	8	14	6	15	1	14	9	4	10
GCTCCATGCCTCACTT	ref_5974_new	68	76	78	58	76	56	85	69	96	52
CCCCTAGTCCTTCCTT	ref_5974_new	9	12	16	14	16	7	17	12	11	13
TTGTGGGGCTCCGACG	ref_5974_new	0	0	0	0	0	0	0	0	0	0
GCCTGCCCCGTGATGA	ref_5974_new	10	32	14	8	26	12	24	15	25	14
TATTAGAAATCGTAGA	ref_5974_new	67	62	78	62	77	62	75	65	79	57
GAAGTCCGTAATCTCT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
TGGAGGTACATCTTGT	ref_5974_new	29	39	37	33	47	38	40	33	44	28
CATTCGCTGTATATCC	ref_5974_new	43	58	70	52	51	39	56	32	69	49
TCATTTAACAATCGAG	ref_5974_new	85	119	134	100	133	78	113	96	123	94
ATAGCTGTTCGTGCAG	ref_5974_new	14	34	17	30	26	21	24	14	25	16
TTTACCTCGGTCTCCT	ref_5974_new	19	18	14	7	14	19	28	13	33	18
CCCCGGTGCTTGCTTT	ref_5974_new	20	22	17	18	13	9	8	15	24	17
GCTTCAAAGTGCACGG	ref_5974_new	39	52	36	23	44	26	50	32	41	23
ACATGCTCCAGGTAGC	ref_5974_new	27	79	34	43	87	30	92	26	98	35
GGGTGTGAAGGTTGAG	ref_5974_new	24	39	32	24	32	27	46	20	30	17
CATTGATTCTACTGGG	ref_5974_new	45	48	38	39	35	26	47	34	43	28
CCGGGATGTCAACCGT	ref_5974_new	0	5	4	2	3	1	1	0	5	3
ATTGGACATTGTTGAT	ref_5974_new	11	5	5	10	5	5	12	7	4	7
TTTGACGGCCGCCTCC	ref_5974_new	17	27	20	19	14	14	30	8	23	12
ATCTCTTACGTCTCAT	ref_5974_new	126	202	178	140	164	106	181	96	222	121
GCAATCTTTCCGGAAA	ref_5974_new	1	1	3	1	6	3	6	5	11	1
GTTGGCGGTTGGATAC	ref_5974_new	43	56	56	38	53	39	51	28	65	27
TACCGTGTTACTTTGT	ref_5974_new	110	137	127	110	152	113	147	93	149	103
GTTACAGGTTTATACC	ref_5974_new	13	23	16	16	18	8	28	15	27	12
TTGAATTTAGTTCGGT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
ATAAGTCCACGCTTTG	ref_5974_new	20	12	33	15	17	13	16	16	23	12
AGTTTCGTCTCAAGCG	ref_5974_new	0	0	0	0	0	0	0	0	0	0
CGGAGCCATTTGGTAT	ref_5974_new	0	0	0	0	0	0	0	0	0	0
GCCTGTGGCACAGGAT	ref_5974_new	16	21	18	7	28	13	20	19	30	9
TGCATCTCGATGGGAC	ref_5974_new	19	19	17	14	22	13	11	13	25	12
ATAGACGCTTGTGGAT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ATTACCGCGTCATCAC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
AACGGTTACGTTCTAA	ref_4201_RC	37	32	37	26	59	19	43	35	41	27
GCTTTTGGACATTTTA	ref_4201_RC	37	41	37	28	45	30	57	35	40	27
TAAGTGATTGATCTTT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TCCCTTCTTATTATCC	ref_4201_RC	5	4	7	6	11	8	8	5	6	4
GTTCGTGATGCTTGAA	ref_2295_RC	11	22	11	9	14	8	13	8	14	12
AAATATGCGTTTTATT	ref_4201_RC	61	75	66	47	79	70	73	47	64	45
TATATGAACGCGCACT	ref_4201_RC	92	142	123	89	140	111	122	72	154	74
TTCGGTTGATAGACGT	ref_4201_RC	12	19	18	14	20	13	29	5	26	11
TGCTTCATTTGCAGCA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TTCAATTGCCTACCGC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TTCCCCTTTGATTTTG	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ACGTTTAACTTGTCAG	ref_4201_RC	123	164	123	126	163	117	189	114	164	95
AAGAGTATTGAAACTT	ref_4201_RC	100	132	135	105	128	106	167	79	148	71
GTTGCTTCTCTGTTTG	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTGCCGTGTAGA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TGTGTCCCTCAGTTGC	ref_4201_RC	34	72	45	35	83	33	64	51	69	35
TCGCGCGGACCCCATG	ref_4201_RC	13	18	13	6	9	9	17	10	21	9
TGTAGCATTGCGCAAT	ref_4201_RC	93	147	103	95	141	96	157	95	154	96
GGTTGGTTGCTGTTTT	ref_4201_RC	68	73	62	58	75	48	69	62	93	60
TGTTCAGTAGATCTCC	ref_4201_RC	13	16	21	7	19	11	16	14	26	18
CCAACATGTCTACGCC	ref_4201_RC	5	8	5	6	4	4	8	8	12	3
TGGTGCCGTGCACAAT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CAGTTCTATTGACGAC	ref_4201_RC	28	40	38	20	40	33	33	36	70	28
TCGGACAGCTCTAGCC	ref_4201_RC	19	21	21	15	28	18	20	17	33	17
CTGGTGTCCGTCGGGA	ref_4201_RC	11	27	22	12	15	14	22	5	23	6
TTATCATCAAAGTCTT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GGAATCTGTTTATGTG	ref_4201_RC	0	0	0	0	1	0	0	0	0	0
ATATCAAAATTTTGGC	ref_4201_RC	12	23	13	20	22	12	31	10	20	29
GATATTTGAGAGCTTT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CACTCATTATCGCATT	ref_4201_RC	36	35	28	22	49	22	58	31	43	34
GGGTCAGTCTCTACAT	ref_4201_RC	32	66	40	30	59	49	37	44	60	33
TTTGAGGCGACTGATT	ref_4201_RC	42	73	43	25	46	27	64	33	62	35
TTCAAGAATTTGGATA	ref_4201_RC	2	7	8	4	11	6	10	4	17	3
TGTCGTGAGATCGAGA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CTCGTCAGGTCTGGCA	ref_4201_RC	11	14	18	9	20	10	15	13	21	12
GTTTGGTGTCTTTGGC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TCCGTCCTGCGTTTAT	ref_4201_RC	10	6	0	3	5	1	16	3	4	0
TAGAATGATTGGCTCT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GTTTTACTTCCAAACT	ref_4201_RC	21	38	41	31	54	34	49	29	48	23
GCATCTTCCACTGTGT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CCTAAGCGTCACGCTC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CTAATATTAATGTGGG	ref_4201_RC	14	18	24	12	33	14	28	8	36	16
TGTGTTCAGTGCGAGT	ref_4201_RC	14	36	11	8	36	25	31	7	34	14
CCTTTTGACTCTTCGG	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TGCTGGAGCGTGCGTG	ref_4201_RC	70	100	85	74	109	71	96	66	108	63
AAGGCTTCCGGGGACC	ref_4201_RC	62	66	82	56	84	55	82	50	93	56
GCTCTTTGTCCTTGGG	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CCCTATGTGTAAGGCA	ref_4201_RC	21	40	28	24	35	20	41	21	36	22
TGCTTGAGGATTGTTA	ref_4201_RC	10	36	10	15	26	6	28	14	21	12
TCCGTTACACACTCCT	ref_4201_RC	10	31	10	13	45	10	29	12	44	14
AGCCATTCTTGTTAAC	ref_4201_RC	13	11	4	6	13	5	18	6	9	5
CTTCCCGGATAATCAT	ref_4201_RC	6	12	17	12	17	3	21	11	17	5
TATATTATCAAGAGCC	ref_4201_RC	38	61	43	24	34	33	63	35	48	29
TTTTTTCTTTGTGTCC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GTTACTGTGTTCAAGA	ref_4201_RC	21	16	20	9	12	8	28	7	11	11
TTACTGGATTAACAAA	ref_4201_RC	69	65	65	37	72	46	72	59	79	52
TCGCAACATGAGTCAA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CCAATGCGGATTTTAG	ref_4201_RC	33	56	42	27	83	42	71	26	70	29
TTGTAATTAACACGCT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CGTGGTTTCCATCTTT	ref_4201_RC	11	12	9	8	13	13	20	18	10	11
ATCCAAGTTCCTCGTA	ref_4201_RC	9	16	14	8	8	9	8	7	17	4
GCGTCTCGGTAGTCCC	ref_4201_RC	1	1	2	2	1	2	1	1	3	2
ATAGTACTGGGACCAG	ref_4201_RC	7	8	5	2	12	4	12	11	7	9
TCATTTTACGACGGGA	ref_4201_RC	42	51	45	31	48	37	57	37	58	33
AATGTCATGCCGCCTG	ref_4201_RC	15	28	17	19	29	9	31	14	28	32
GTCGGTCGTTTCATTT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GGTCCTTCAGTTTGTA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ACTTTAGAAGTGCTTT	ref_4201_RC	5	8	2	4	12	1	10	2	4	2
CTCTGTACTCACTATG	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GGCCCTTTAGTTTCTG	ref_4201_RC	24	32	36	19	40	28	26	21	27	13
CGACAGGGAATTGCGG	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CTTTTGTCATTATTTT	ref_4201_RC	21	18	19	26	17	17	26	11	25	14
GCTTCTCCCCGGGGAG	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
AGCAAGTAGCTCATTG	ref_4201_RC	28	35	13	25	20	19	41	15	35	23
TACGAGCCTATTTTAG	ref_4201_RC	30	56	40	29	42	26	66	32	56	29
CCCGATCGGATGTTAG	ref_4201_RC	52	63	45	51	66	33	69	33	65	35
AACGACAGACGGTGAT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TATAGCGGGTGAGAAC	ref_4201_RC	17	32	15	17	19	16	22	17	26	13
CAGGGTTTGTCAGCTT	ref_4201_RC	19	37	29	22	50	26	37	17	43	24
AGTACCAAACGTCTTT	ref_4201_RC	1	1	0	1	1	2	5	0	2	1
TGTATCCGCGATGAGA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GTTGCGCGCTTTTTGT	ref_4201_RC	20	36	33	19	24	29	28	22	39	18
ACGCCAGATTGCAAGT	ref_4201_RC	2	9	5	2	9	2	2	1	3	4
TGTGGGCTTGGTCAAG	ref_4201_RC	7	6	3	1	8	0	1	1	4	3
GCTTTTACGGCTATGT	ref_4201_RC	19	28	23	20	26	16	26	21	27	18
AGCGACTATCTGCTTT	ref_4201_RC	12	22	24	23	24	17	32	20	29	18
TATTGGGACCGGTTAT	ref_4201_RC	29	55	36	39	66	35	58	37	67	32
CGCTCTTTATAAAGGG	ref_4201_RC	22	17	14	11	18	9	28	16	17	15
GGTGGGGTACGGTTTC	ref_4201_RC	29	48	52	43	50	31	69	36	62	31
GCAGGCTACGCTTTTA	ref_4201_RC	37	45	34	31	43	21	60	21	48	25
AGCTTTTTTGTTCTGT	ref_4201_RC	33	44	51	50	46	37	48	43	49	39
CTCAAATGTGATTATT	ref_4201_RC	2	2	3	7	2	0	6	2	5	0
GCTTTGCATTCTCTTA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ATCGGGGGATTAGATA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
AACCTGGCTCGTTTGC	ref_4201_RC	5	19	7	7	15	6	13	8	18	10
CAATAGCCGTCTTCAT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GTGGCTACGTGACCGC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GCAGTACGTCATTTAT	ref_4201_RC	9	7	14	14	10	7	12	8	8	7
ATTAACCAGACATCGC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ACTTCTGAGGGCTCTA	ref_4201_RC	9	13	10	21	17	13	21	19	23	21
GGCGTTCCGTCCTGTT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GGGAGTTAAACTGGAA	ref_4201_RC	18	14	11	11	22	13	17	8	17	9
GCACCACCCTACTCCT	ref_4201_RC	17	32	16	24	13	18	23	12	30	10
ATATACCTATATTCGC	ref_4201_RC	5	4	4	2	3	5	17	7	10	6
GATTACAGCACTCGGC	ref_4201_RC	3	4	6	7	10	2	5	6	10	7
TAAGAGTTATCGCTTT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CACGGCGTGAGATTGG	ref_4201_RC	6	7	7	9	11	6	12	9	16	7
TATGTGCTTACAATAA	ref_4201_RC	8	9	11	9	11	1	7	6	18	12
TGCCTCTAACTTACGT	ref_4201_RC	9	31	18	12	28	15	33	16	30	17
ACGGGGCGCTTCGAAC	ref_4201_RC	13	31	24	18	35	19	48	12	36	26
TAAAGGTTCGCCTCTC	ref_4201_RC	45	68	52	43	67	53	68	56	68	42
GTGGTAATGTTCGCAA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TGGGCATTTCAGACTG	ref_4201_RC	29	63	42	35	45	34	55	28	64	42
CGAGCAAATAACGTGA	ref_4201_RC	10	13	13	10	16	17	11	23	9	10
CTGTCCTCCTTTCCAC	ref_4201_RC	14	20	24	23	28	23	30	15	44	21
AGTGAACGTTACGGCA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ATCGGTTATATGACGG	ref_4201_RC	9	15	13	11	14	7	23	7	18	17
AGTTTCTTCGCTCCTG	ref_4201_RC	28	31	28	26	46	30	36	47	44	30
GTGGTGCCCCCCGGAA	ref_4201_RC	46	77	56	55	52	49	77	56	80	45
ATCCTTGACTACGTTT	ref_4201_RC	115	179	147	117	186	149	207	100	184	99
TATTGGCACAGCTCCT	ref_4201_RC	12	22	15	14	21	15	15	20	29	6
TTTTGGGAGCTTTGTA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGAAGCTGCAGT	ref_4201_RC	7	6	9	4	7	10	16	4	11	5
ATTAACTTCTATCCAT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GGACGGTCGGCTTCGT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
ACCATGTTTTGTACTC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CATAGGCGATATCGAG	ref_4201_RC	1	4	1	5	6	5	3	4	1	2
TGACACGCACTGAACT	ref_4201_RC	11	23	12	14	13	12	22	6	25	12
AGGTCGATCCAATGAT	ref_4201_RC	23	44	35	40	53	21	47	33	60	34
TGAGTTAGTTACTACG	ref_4201_RC	15	42	23	23	36	38	44	26	38	16
ATCGGAGGATTAGATA	ref_4201_RC	104	110	108	76	134	90	138	92	157	88
TTAGATTCCCCTACTG	ref_4201_RC	6	9	5	8	3	5	7	4	4	6
CTGGATTGTTTGGTAA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
CCCGGTGCGTTTGCCA	ref_4201_RC	20	20	22	11	25	24	42	11	33	11
CTTTGACAGGACACCC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GAGGCCTGACAAGTTG	ref_4201_RC	40	58	38	41	62	35	57	46	59	29
GTCCGTTCCAAGAAAC	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
TTAGCCAGCGAGAATA	ref_4201_RC	4	4	3	5	6	3	7	10	8	4
TCGATGTCCTCACGTT	ref_4201_RC	55	68	72	43	73	62	67	59	71	56
GTCTGCCCGAGCATGC	ref_4201_RC	9	10	9	2	13	4	10	7	4	7
AAGACCCTCCGTTACA	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
AGGGCGGAGCACATTG	ref_4201_RC	15	25	13	17	17	8	18	13	16	14
GGTGCTGCGTTGCCAT	ref_4201_RC	2	4	5	1	11	3	7	5	9	5
GCGATGTCTCCTATTT	ref_4201_RC	0	0	0	0	0	0	0	0	0	0
GTTTGTTGAGCGAGCT	ref_4201_RC	8	15	22	6	12	7	16	8	14	17
CGCTCCACTAGGGCAA	ref_3594_RC	7	9	9	7	14	4	15	7	13	6
CCGACCGGTCCATGAT	ref_3594_RC	35	43	32	39	51	31	62	39	64	33
CTCATTATGCTCGGTT	ref_3594_RC	49	75	66	42	78	41	67	43	72	35
CTCTCCTCGGTAGCTT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CGTTGATCGTCCGGGG	ref_3594_RC	7	12	22	5	10	10	14	9	12	10
GTAAGTGCGGTTGGCG	ref_3594_RC	104	142	144	119	152	86	145	104	170	91
AGTGGGTACTACTGCA	ref_3594_RC	49	72	62	58	46	60	79	46	83	58
ATGTTCCTTCCCGGTT	ref_3594_RC	4	9	7	4	2	6	5	9	10	3
AGTCTGATATAGCCGA	ref_3594_RC	27	36	37	35	41	26	55	28	49	23
CTTCCGGCACGCGGTG	ref_3594_RC	31	41	36	32	51	41	66	25	80	44
ACGTGTTGCTGAATCG	ref_3594_RC	57	106	88	77	105	68	92	72	99	57
ATTAAATGACGCGTAT	ref_3594_RC	0	0	0	1	0	0	0	0	0	0
TATCCCGCTGTGAGCT	ref_3594_RC	202	254	230	182	255	204	262	167	287	177
ACCCGCGGAAGGAATC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CTTGTACATGAGGTGA	ref_3594_RC	108	184	151	122	180	142	177	100	208	109
CGGACAATGGTGCGTT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GTATGAGGAGATGATT	ref_3594_RC	78	96	86	78	93	63	122	61	95	81
AGGAGTGCAGTCGTTC	ref_3594_RC	84	99	96	72	98	66	111	67	140	65
AAAGTGGAGGGTATCG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GAAGCGGATCGTTACC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TGGAAATACCCCGGTT	ref_3594_RC	20	34	22	16	24	24	36	14	24	21
ATCTAACCAATATTTT	ref_3594_RC	62	85	86	61	82	71	94	56	86	76
TTTCTTCGGACTCTGG	ref_3594_RC	14	8	12	9	11	7	2	2	7	4
GTACAGCCGCGTTTTT	ref_3594_RC	2	6	6	6	5	4	4	3	3	6
TCTCAGTGCCCATGGG	ref_3594_RC	10	14	17	15	13	10	19	11	13	8
CTTAGCTACTTGTTCA	ref_3594_RC	0	2	0	0	1	1	6	0	2	2
GTAGGCTGCTGATCGG	ref_3594_RC	180	228	210	173	254	185	222	149	235	150
GGCCTTCTCCCCCGAT	alt_3594_RC	42	57	70	49	67	48	63	37	69	51
CCAGGCAGATAAAGGA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GACAAGTCCGAACTGT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GGGCATTACACTCGTT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TTAAGACTTCTGATAC	ref_3594_RC	24	28	32	22	19	10	18	27	21	19
AGGACTATCCTCCGGG	ref_3594_RC	45	73	71	49	69	51	74	54	86	43
AACGCTGGGGCAATCA	ref_3594_RC	95	162	146	119	170	122	188	107	167	97
GTTTGTCCCGAAGTTT	ref_3594_RC	19	25	21	16	20	19	34	17	28	17
CCATTTTTGTGTAGTA	ref_3594_RC	80	78	73	68	94	78	90	86	96	81
CGTAGATGCTTTATGG	ref_3594_RC	12	14	16	12	22	12	26	14	18	11
GCTCCGTGCTGTTTTG	ref_3594_RC	51	58	50	59	59	35	75	44	58	50
CCTTGCGAGGCTTTTG	ref_3594_RC	11	20	9	9	12	6	18	14	13	5
GTTAACATCTGCTTTG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
ATTCAGGCAATCTTGG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
ACTAATCTAGTCTTTC	ref_3594_RC	18	22	23	29	21	22	13	19	27	8
ACGGTCTATGTCCTAG	ref_3594_RC	35	63	55	41	70	41	60	43	68	35
ACTTCTAAACCTTGGT	ref_3594_RC	11	12	4	5	18	9	15	3	13	5
TTCTTCTGGTCCGTTC	ref_3594_RC	87	107	106	71	95	65	104	57	99	76
CATATGCAGACCGCTT	ref_3594_RC	21	46	32	52	52	17	40	27	42	29
GGGGTGTAGCTGGCGC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GTAAGCGGGAGTGCGC	ref_3594_RC	27	61	43	41	56	32	62	25	66	25
TTCCTCTCGGACTAAA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CTTCGTGAGTCCTCTA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CATAGCGACGTTACGC	ref_3594_RC	21	23	14	19	29	11	28	19	31	14
TTTCCAGGAGGCCTCA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
ATCTCTGACCAATTCT	ref_3594_RC	61	88	66	51	99	61	80	63	87	47
CCCATCTGGGGGAATA	ref_3594_RC	49	80	63	41	60	40	57	37	64	39
CCGAGCCTTATCTGCA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CGATGTTCAGGTTTGT	ref_3594_RC	33	46	34	32	38	28	47	23	50	23
CCACGTTACACTAGCC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CTCCATACCATGGTCA	alt_3594_RC	99	133	126	95	182	104	162	96	218	94
AATTGGGCGTGCGCCG	ref_3594_RC	12	19	9	9	13	8	17	5	20	15
CGTGTCGCAGCCCGTG	ref_3594_RC	133	148	145	164	175	150	176	115	193	130
TCGTCGAGTTGGATGT	ref_3594_RC	0	3	0	0	0	0	0	0	1	0
ATTAGGAACATCAGTC	ref_3594_RC	39	58	60	30	61	34	63	45	78	45
GCCTTTGCCTTAAATG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTATAGCTTCGC	ref_3594_RC	36	54	40	44	61	34	78	29	58	30
ACTTACGTCTCTGACC	ref_3594_RC	6	26	5	13	17	10	16	9	15	11
TTCACGGAGCTCTAAT	ref_3594_RC	9	16	18	13	11	6	12	8	20	18
CAAACAGTTTAGCACC	ref_3594_RC	7	2	4	4	4	3	1	7	1	6
GGCTGTATCTCTTGTG	ref_3594_RC	222	317	262	231	302	215	344	220	362	216
TGAGCGTTCCACACCT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GTGCTATTCTCAGGAT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TGGGTATCCCCCATGT	ref_3594_RC	29	28	24	25	30	15	27	28	35	22
TTGTGTTAGTGCCGTG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GATATTCTCTTTCCAA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GGCCCTTTCAGTAATT	ref_3594_RC	27	31	34	32	29	26	44	25	61	32
ATTTTACACGTTGTCC	alt_3594_RC	74	116	82	74	152	82	123	78	131	88
CGATGTAACGTCATGA	ref_3594_RC	29	39	20	17	38	21	46	29	40	23
TCAGAACTTACTATTG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TTGGATTTCACTCTTC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GAAACTCCCGGGTTCA	ref_3594_RC	36	45	38	21	59	23	35	26	43	29
TAGTATCGTACTGAGG	ref_3594_RC	56	85	71	54	91	55	99	68	91	36
ATGCCATTTAGGTGGG	ref_3594_RC	29	35	36	24	55	27	44	21	32	13
CACTTTCGCCTTCGTC	ref_3594_RC	0	2	3	0	1	0	1	0	1	0
TTGCCCTTTCGATGTC	ref_3594_RC	26	15	22	17	27	25	27	22	33	27
CTTTGCTACCCGGCTT	ref_3594_RC	12	9	17	10	8	11	19	11	22	7
GTATGTCAAAGGGGGG	ref_3594_RC	108	155	134	108	161	120	158	120	187	117
GTCAGCGTGATTATAT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CTACCAATCCGGGTCT	ref_3594_RC	64	106	90	78	101	69	105	67	99	59
CCGTGTGGTTGCCTGC	ref_3594_RC	9	47	26	22	29	30	23	17	18	9
TATTCCGGCGAAATGT	ref_3594_RC	76	106	86	74	76	60	120	55	110	65
GATGGCCAGTCTCATG	ref_3594_RC	189	244	199	185	278	187	255	159	253	144
TTGGCTAGCCAGGGTC	ref_3594_RC	43	65	46	46	44	28	73	38	63	22
GGTCAGCACCTGACTA	ref_3594_RC	18	35	20	21	27	23	26	25	22	21
CTTGCAGCTCTTCTTC	alt_3594_RC	34	47	50	55	46	46	60	26	58	40
GCACATAATAGCTATG	ref_3594_RC	8	11	6	7	7	2	11	2	7	4
CGTAATTTTCGCGTGT	alt_3594_RC	140	212	163	146	189	157	220	162	228	148
CCAGTTACAGCGGTTG	ref_3594_RC	8	20	13	16	27	6	36	6	41	5
CTAATTATTGTACCCC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TCCCATCCCAATGCTC	alt_3594_RC	88	254	122	91	207	79	203	82	207	71
TCTTTCCGCTGCTACC	ref_3594_RC	60	75	75	63	86	78	95	71	88	66
GATGTCGGAAAATTAC	alt_3594_RC	40	50	43	57	45	45	44	37	50	24
TGACCTGTTTTTAGTT	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CTGTACTACGACTTGG	ref_3594_RC	9	18	8	5	13	9	23	6	9	16
TTAGTTGGTCTGGGCG	ref_3594_RC	16	23	17	18	17	17	19	12	20	7
CAGCATATTGTAACGT	ref_3594_RC	6	7	6	5	18	6	11	3	10	6
CTCGATCCTTCTCGCC	ref_3594_RC	2	3	2	2	0	2	2	2	7	3
CAAATGTGTTTTCGTA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GTTGGCGGATAGTGGG	ref_3594_RC	0	2	0	0	0	0	0	2	0	0
TCTCTCTTGTCCTATC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TGAGCTAAGTTTTATT	ref_3594_RC	51	33	45	40	52	31	47	36	51	26
CTCCATAAACGGTGCG	ref_3594_RC	9	9	7	5	8	4	17	8	12	10
CTTAGTTCTGGACTCG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TTATTGGACCCGGTTA	ref_3594_RC	51	109	85	78	60	48	68	50	78	55
CTTAATACGACTGTGG	ref_3594_RC	5	16	12	16	28	9	20	9	20	11
GCAAGCTATATACCTC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TCGCCATCCATCACAC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
ATCCATGTATGAGTGA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CCCCGCAATGTGGTTC	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
CCTATACCTCTCACGC	ref_3594_RC	41	82	50	52	75	50	90	38	99	30
GGACCGTAGCTAACTA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TGAGTCGTTTTCCCTT	ref_3594_RC	15	32	28	29	23	20	31	15	32	31
ATTCAGTTCCCCATGA	ref_3594_RC	11	21	17	21	19	19	23	16	29	19
AAATGGATACTTGTGT	ref_3594_RC	26	49	43	30	16	24	46	26	33	35
TACTCAGCCGAGAATT	ref_3594_RC	12	16	9	11	21	6	33	7	29	8
CCTACAGTTGATTTTC	alt_3594_RC	65	103	65	59	76	65	99	71	95	52
CCCCGTGTCTTTCAGC	ref_3594_RC	11	12	21	13	25	10	19	6	18	10
GAGCAGCCTATGTGGC	ref_3594_RC	19	31	19	22	32	22	37	17	36	14
GCAGAGGTATCGTGTG	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TGTGTGCTGTTAGACA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
GGTTTTGCAAATTTAG	ref_3594_RC	7	10	9	7	7	8	9	8	4	5
GTGCTTGAAGATTATT	ref_3594_RC	20	12	22	21	22	17	31	15	20	17
GTCGTAAGTCGTTCAT	ref_3594_RC	15	19	18	16	11	14	18	17	14	17
GCTCAGTGTATGTGTC	ref_3594_RC	26	61	48	30	57	36	58	29	57	19
TACAAGCCGTGGAATG	ref_3594_RC	15	11	9	7	13	6	20	9	7	6
TACTACGATCGACCCA	ref_3594_RC	2	14	4	11	4	5	8	9	5	5
TCGACCCGCCACAGCG	ref_3594_RC	19	30	36	24	17	27	37	22	17	22
GGATCTATCCGTTTAA	ref_3594_RC	12	10	12	11	18	10	10	7	8	10
CTTATTAACCGCCGTA	ref_3594_RC	42	61	51	43	83	41	89	37	54	57
TGTTCAACTAAACAAT	ref_3594_RC	26	36	27	24	31	26	20	29	34	16
CTCCTGATGTTAATGA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TTGACCGTTGCATTAG	ref_3594_RC	8	11	11	9	11	6	12	8	16	7
CATTACACTTGTAATA	ref_3594_RC	0	0	0	0	0	0	0	0	0	0
TTCCGAGTATCCGTGT	ref_3594_RC	90	120	108	94	146	99	145	82	136	59
ATGAGTATTAGTCGAG	ref_3594_RC	31	46	39	35	45	32	58	38	35	33
ATAGTGTTTGGTCGGG	ref_3594_RC	21	28	13	13	23	23	36	23	31	23
ATACTTCTACTATCCT	ref_3594_RC	18	15	26	23	21	14	20	16	24	14
TCAAGGAAATTGAGGT	ref_3594_RC	14	21	21	22	41	17	25	12	22	18
TTTTATATCTCGGGTT	ref_3594_RC	71	77	64	47	90	61	90	61	93	56
CTTCAAGGTCCTTCCT	ref_3594_RC	7	4	4	4	9	5	4	5	4	1
CGGAATGTACAACAGC	ref_3594_RC	29	35	35	40	59	29	38	22	45	24
GCGCGCACTTAAAGGC	ref_3594_RC	23	26	7	26	22	21	23	15	19	9
CAGCGTCTCACGGGAT	ref_3594_RC	18	24	16	16	21	12	17	12	20	18
AATGGCAACATTCTAT	ref_3594_RC	10	13	18	12	31	16	29	10	20	12
ATCGTGGTGTTTTCTA	ref_3594_RC	18	27	19	21	26	27	37	20	34	19
GACTTGCACATTTCTC	ref_3594_RC	23	25	28	22	27	21	28	16	35	17
AACGGTGTAGGCTAGC	ref_3594_RC	19	17	23	13	21	22	20	7	20	20
AGCACTGCTTCTAGGG	alt_3594_RC	7	14	9	9	11	10	5	8	12	6
CGGCTAAACCCAAACT	ref_3594_RC	7	12	18	8	17	12	17	5	11	11
CCTTGCGCGCCCATAA	ref_4642_reverse	239	329	257	262	327	256	356	202	358	201
GTGTCTGGGTTATCTG	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CTATCTCTCTATATTT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTCAGATTGTAC	ref_4642_reverse	37	36	39	35	69	37	45	37	55	36
TATGCTTCCTCATAGA	ref_4642_reverse	5	9	9	2	12	3	17	7	18	1
TCGAGCCGAAACGTTT	ref_4642_reverse	21	38	26	26	37	18	24	20	48	28
TCCCAGTCAAATCATG	ref_4642_reverse	57	107	40	45	129	40	102	51	144	36
TGGCATATGCTCATAC	ref_4642_reverse	25	24	27	26	37	30	45	27	37	20
ATGGACAAATGTTTAG	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTAAGTCGGCAAG	ref_4642_reverse	37	48	28	36	57	23	43	35	57	29
TAATAAGACGGGTTCG	ref_4642_reverse	67	89	93	98	109	76	113	69	121	58
TCGTCAGATGTCTAGG	ref_4642_reverse	11	11	14	16	13	16	16	9	31	14
AGGCTCGTATGGTGAT	ref_4642_reverse	6	14	13	16	13	12	12	3	23	11
CCAATTTGCTGCTAGT	ref_4642_reverse	15	27	12	17	30	13	28	17	20	23
TTTTGTTAACCTTGCA	ref_4642_reverse	73	91	73	69	77	52	82	68	97	58
CCGCAGTTACCGCGAG	ref_4642_reverse	125	219	150	85	180	140	188	110	217	111
TTATCTGGCATTCTAA	ref_4642_reverse	28	37	37	40	26	37	31	26	42	23
CTATCTCACTGGAGTG	ref_4642_reverse	35	79	41	48	79	33	106	32	96	40
GGCATGTTTAGTCCGG	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TAATCTGTCGGAACGT	ref_4642_reverse	37	89	47	56	79	57	94	40	97	39
ATATTTGCCACACCTA	ref_4642_reverse	33	72	38	47	72	37	75	24	74	41
CTTGCTTGGACACCAT	ref_4642_reverse	97	154	108	74	145	81	152	91	141	82
TAAGCTGCCTTTAAGA	ref_4642_reverse	39	50	63	47	75	48	67	56	73	44
AGTAATATAGTGTTCA	ref_4642_reverse	26	35	30	29	33	26	20	17	29	21
GATCGTAGCGTCCGAG	ref_4642_reverse	9	16	15	9	18	10	11	13	19	12
GACAAGTAGTTTATTG	ref_4642_reverse	19	37	16	18	40	21	30	20	38	15
TTACGGTAAATTTTTG	ref_4642_reverse	20	32	16	20	31	13	26	17	34	20
CGGCTTAGCCACTAAT	ref_4642_reverse	6	9	4	5	3	3	7	2	5	4
TTTATATTGGTGCGTT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTACATGTTCAAG	alt_4642_reverse	129	170	140	137	196	115	205	138	177	110
AACGCTTGAGAATCCA	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TTTAACCTTAAGTCTT	ref_4642_reverse	8	3	5	4	5	3	3	3	3	3
GTACGACTGATGCTCT	ref_4642_reverse	59	148	50	68	104	68	128	57	135	75
GTCATTGCGTCTCTTC	ref_4642_reverse	7	12	4	5	8	8	6	3	10	5
TATCTCTATGCCATCG	ref_4642_reverse	23	21	18	12	31	20	28	26	25	25
TTCGTGTGATTGTAAG	ref_4642_reverse	23	36	27	26	49	25	45	31	45	24
ACCGTCGCTCCACGTC	ref_4642_reverse	15	11	5	4	10	7	11	4	15	5
GTTTGCATCGAACTCA	ref_4642_reverse	14	15	13	8	20	14	25	13	27	12
GGTGATGAGCATCAAT	ref_4642_reverse	8	20	16	12	12	6	19	10	19	7
TCACTGTACTATTATA	ref_4642_reverse	3	6	0	0	2	1	3	1	0	2
TTTCTTGTAACATCGA	ref_4642_reverse	42	91	80	59	75	59	73	64	79	43
GAGTTCGTGCATTAGG	ref_4642_reverse	61	107	71	74	127	65	106	78	110	54
GTATCCGGTGGACGAG	ref_4642_reverse	6	16	9	10	10	13	24	3	10	7
TTTCGGGAACGAATTT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TTCAAGCAACTTGCAT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CAGGAGCACAGACTTA	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGCTTCTACCGGT	ref_4642_reverse	45	63	55	37	44	44	86	31	54	41
TATTAGCGGCGTGGGT	ref_4642_reverse	7	16	13	20	13	10	21	3	17	6
GTTACAGGCCCGCCGA	ref_4642_reverse	3	4	0	3	2	1	0	1	2	3
CTATCGCACGTTATAT	ref_4642_reverse	11	15	16	6	13	7	8	10	8	8
TTACCGTTGCAACGGA	ref_4642_reverse	67	80	67	70	86	60	83	54	89	63
GGCAGGGCCGATTTTT	ref_4642_reverse	10	25	10	16	27	8	16	21	8	13
CATTTTTATTTCCAAC	ref_4642_reverse	74	60	89	77	74	77	81	85	93	50
ATGGTGGTTACGTCTT	ref_4642_reverse	46	51	50	52	52	49	47	35	66	49
GAATTGCTTGATAATG	ref_4642_reverse	31	43	25	24	46	29	48	25	38	27
CTTACTCTCCATTGGT	ref_4642_reverse	19	33	16	21	23	9	22	18	26	16
GCTGCTCAGGTCTCTC	ref_4642_reverse	27	27	24	33	36	21	31	26	44	20
ACCAACAAGTCACAAC	ref_4642_reverse	14	28	25	17	22	10	31	15	29	12
AGTGCTACGGCTTATA	alt_4642_reverse	31	40	34	23	54	34	49	33	55	23
AACATCGGTTACGCTT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TTATATTACCTCCAAC	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGCATCTTACGAA	ref_4642_reverse	23	36	25	24	47	25	36	22	36	13
AAACGTACGGTAGGTT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TCTTATCGCAGGGAAC	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TCCAACGCCCTTTTTC	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTGTGTGGTCTCG	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
GATCTTAGAACCCTGC	ref_4642_reverse	18	28	27	15	33	12	26	14	33	18
GATAATCGTATACCAG	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGCCTTGTGTGT	ref_4642_reverse	11	19	11	7	19	9	14	9	18	5
CCAATACCCTTCCCTT	ref_4642_reverse	46	110	83	76	125	61	124	54	112	54
GCGGGCCATGTGTGTC	ref_4642_reverse	11	29	22	19	22	16	25	8	27	20
TGAGCCAGATGAAAGG	ref_4642_reverse	8	12	13	11	12	7	18	12	6	4
TTAGAGTTATTTTTCG	ref_4642_reverse	21	46	30	21	32	26	30	28	36	13
ATCCGTTTCTTCTTGA	ref_4642_reverse	8	12	10	21	8	4	12	19	20	13
CAGTGTGCTTGGTCCG	ref_4642_reverse	7	9	6	4	11	5	11	8	7	2
TTCTTACCTAGAGCGG	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
AGGATTTTATTTTGTT	ref_4642_reverse	54	80	68	50	85	66	66	87	72	59
TGTTTTATCAGCTGAC	ref_4642_reverse	6	21	14	9	23	16	33	17	37	16
TTGTTCTTAATTTTAC	ref_4642_reverse	5	9	3	5	8	4	7	2	13	8
GTTTTGGGAACTGCAC	ref_4642_reverse	81	128	72	68	109	62	123	60	154	51
CTTTCGAGCGACTTGA	ref_4642_reverse	151	178	144	120	210	121	234	122	252	119
TATGTGCTTCTTCGCG	ref_4642_reverse	20	36	45	24	42	26	38	32	49	22
CCTTTTCTGCAGCTCT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTGAAACCTTGT	ref_4642_reverse	34	53	40	34	31	29	54	35	56	31
CACCGATACCCTTCGT	ref_4642_reverse	5	11	6	7	16	8	13	4	22	7
CGCTTTTAATAGTGAT	ref_4642_reverse	1	7	6	2	2	3	1	2	7	5
ATTCTTAAGACCATAA	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGCCAACCCTGAT	ref_4642_reverse	47	48	30	28	74	39	56	26	65	29
CTAGGGGTACTAGATA	ref_4642_reverse	19	21	11	12	17	17	22	18	22	17
TTGGTTATCCAGAGTT	ref_4642_reverse	31	53	46	40	53	29	53	26	40	26
AAATTCTAGTCGGCAC	ref_4642_reverse	49	84	42	50	60	77	79	47	86	36
AGTGGTCTAAATAACA	ref_4642_reverse	13	19	14	10	22	16	14	7	27	5
TACAATATGTAGCCGT	ref_4642_reverse	3	8	5	7	2	3	4	7	2	6
GAGACCCACGTACTCT	ref_4642_reverse	13	16	11	15	26	14	30	12	25	29
CTCTTTGCCACCGAGC	ref_4642_reverse	27	37	37	19	45	21	54	20	57	13
CTTCCAGCGGAAACTC	ref_4642_reverse	3	6	5	2	8	3	6	4	10	5
TATTACCGTGCTCAAG	ref_4642_reverse	24	22	29	22	37	24	34	17	42	13
ACGGCCCTTTGAAGTT	ref_4642_reverse	5	8	6	8	13	1	25	4	20	6
ATTAGATGTCTTAGAT	ref_4642_reverse	4	11	7	8	12	6	7	3	14	5
TTCAGTGAAAGTGTTA	ref_4642_reverse	25	30	23	15	37	13	44	25	41	17
AATGTTACCCGATCAC	ref_4642_reverse	19	35	14	24	30	13	31	20	39	29
CTGGCCTATGTAGCAT	ref_4642_reverse	42	49	45	30	53	38	39	38	53	31
GTTACGTTCTTGAGAT	ref_4642_reverse	6	8	7	5	7	3	3	4	7	7
TATTCGTACTGTTCTG	ref_4642_reverse	69	106	60	68	133	70	119	64	112	62
GGCCTTGTCCGATCTG	ref_4642_reverse	6	8	9	8	8	11	11	5	8	6
CCACTGCCACCTAATT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGTGTTGATGCT	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCTGGTTAGCTCG	ref_4642_reverse	7	11	10	8	11	13	10	12	13	3
GCCCGCATTGTACTAG	ref_4642_reverse	148	191	171	151	213	113	239	129	256	125
CCACCCGACACAAGAT	ref_4642_reverse	13	20	11	11	18	11	17	11	26	12
ATTTGTTACAGTTCTT	ref_4642_reverse	10	23	17	20	29	24	19	16	25	14
TTTGCTTCACCATATT	ref_4642_reverse	43	46	35	37	61	31	53	30	45	33
TTTGTAGTAGAAAATT	ref_4642_reverse	11	9	12	5	14	11	16	7	21	11
TAACTCGTGTCTTCGA	ref_4642_reverse	21	32	32	22	23	13	32	13	27	22
GCTTGGGCGCATAGTG	ref_4642_reverse	5	10	3	4	7	2	16	12	18	4
CGGCGTTCTTCGCAAG	ref_4642_reverse	12	14	14	16	22	18	22	15	28	12
TTGCGTGGGCGATACA	ref_4642_reverse	6	12	15	12	15	12	16	14	16	9
CTCTAATGATAAGTAA	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGATTTTAGAAAG	ref_4642_reverse	3	12	9	7	13	4	10	7	5	5
TTGGCCAGCAAATTGG	ref_4642_reverse	8	17	16	9	14	13	19	7	23	14
TTTGATTCGACTCAGC	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGCTCGGTAGGCT	ref_4642_reverse	16	41	13	19	44	12	29	17	33	20
CGTAGAAGAAGCGGAC	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
CAAATCCATGAAGTTC	ref_4642_reverse	6	13	13	7	12	7	9	8	7	4
TTGGCTGCGTTTTGTT	ref_4642_reverse	17	40	24	30	27	23	30	27	30	24
TTGCGTAACTTTAAAC	alt_4642_reverse	4	19	15	13	20	6	23	10	20	14
GGGCGCGCAACCGTCA	ref_4642_reverse	0	0	0	0	0	0	0	0	0	0
AGGTAACGGCTGCCTA	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TTCAACTCGGCACAGT	alt_110_RC	65	155	108	78	143	73	151	73	159	70
TAGATCTACAGTTTGT	alt_110_RC	37	53	40	23	75	28	73	27	83	27
GCAGTTCTAAAGCAGG	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CAGCGTTTATGATACA	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TATTTCAGTGCCGTTG	alt_110_RC	10	12	6	5	7	9	10	3	12	5
TACTCCTCATCTGTTC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CGAGGGACCGGCTTAG	alt_110_RC	27	34	20	28	46	22	62	19	63	17
TAGTAACGGATTCTGT	alt_110_RC	164	248	203	174	279	147	266	150	285	152
TTACATTTCGTTACCT	alt_110_RC	182	344	232	205	355	198	386	166	379	164
AAAAGTCAATGGCTCA	alt_110_RC	13	30	21	9	24	10	28	12	27	10
AAGCTTTGCTAGCCAT	alt_110_RC	94	160	128	88	195	88	189	99	183	106
AGTATGTGCCTAGCGT	alt_110_RC	30	50	31	19	64	31	61	31	85	21
GTACCTACTTTGCCTT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TATTCTAATTGCCATG	alt_110_RC	13	14	10	9	6	8	20	12	15	12
ATGTCACGGTGCTTTT	alt_110_RC	17	30	24	13	23	18	28	15	28	14
CTAAATACTGGTTTTT	alt_110_RC	25	49	29	26	57	20	58	24	67	19
CAGTCTACCAACGTCT	alt_110_RC	3	4	2	0	4	0	2	0	2	1
ATCGGGGGTTATGTGT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
AATGAATAGGACATAT	alt_110_RC	3	21	13	10	21	12	26	6	19	8
GCGAGTTGTATGTTTA	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TACGGTGGTTTGTCCA	alt_110_RC	15	20	12	13	28	13	25	22	23	13
TGCGGCAACTTTTTCC	alt_110_RC	2	12	15	9	14	5	21	7	22	8
GAGTAGCAAAACATCT	alt_110_RC	8	14	14	12	19	4	20	4	22	13
TAGTACCCCTGCGGTT	alt_110_RC	6	14	15	14	23	8	22	7	22	14
GATATTAACTGCATTT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TAATGACTGATAGGTC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TAGTCCTGTTGCAGAT	alt_110_RC	17	21	22	12	31	20	28	11	24	7
TCTCCCATTATTCTAG	alt_110_RC	5	13	5	4	13	5	19	3	9	3
ATGAGGTCCCCCCACT	alt_110_RC	8	13	13	8	15	8	9	13	26	12
TTTAAACACTTATTTG	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TCACACCTAATAGTCT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
GGTGCGTCAACAAGCC	alt_110_RC	13	37	15	15	27	8	29	7	37	15
CACAATCCATGTGAAT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CTGCGGACCATCTACG	alt_110_RC	19	51	27	31	48	20	51	18	56	21
CTCGGTAGTCCACCAC	alt_110_RC	20	25	19	16	14	7	18	12	36	14
TAGTTAATCCAGGGCT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
GCCCATGTAACGGGAT	alt_110_RC	16	32	4	14	31	9	19	9	20	15
CTAGCTTCTATTATAA	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CTGTATGCTTTACGGG	alt_110_RC	0	0	0	0	0	0	0	0	0	0
GGACGGGATGAGCTTT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
AAGATGCGGGATGAAC	alt_110_RC	8	15	7	6	14	10	19	9	13	8
GGTAGCCGTTTAAAGA	alt_110_RC	18	47	16	12	27	16	27	13	39	20
ATTGGCCTTTATTGAC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TGTGCGAGGTAGTAGC	alt_110_RC	12	30	21	19	23	14	34	18	23	10
AGATTTTTGATTGGCG	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TTCACTTGCATCAAGT	alt_110_RC	38	63	34	32	74	18	50	38	61	24
AGCTTCTTCCAGGTCC	alt_110_RC	13	24	13	9	10	4	11	9	15	9
CATGATCTAGAGGTCT	alt_110_RC	2	6	5	1	11	1	4	5	5	2
CGCGACACCCATTATT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CGTACCGTAGGTATAC	alt_110_RC	10	23	6	5	18	9	24	7	21	11
ATGAGTGAATCGTGTC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGATCTGTGTAC	alt_110_RC	6	37	9	11	52	12	44	7	45	14
CAAATTTCGCCCATTG	alt_110_RC	38	46	25	19	45	18	45	26	38	12
TTACGTAATGTGTAAG	alt_110_RC	7	13	11	11	29	7	17	8	28	10
ACACCGCTAATCCTGG	alt_110_RC	3	10	4	2	10	3	8	4	8	1
TGGAGGGTCAGGACTC	alt_110_RC	3	8	9	4	13	6	8	6	9	10
GACAAGTGTGTATCAA	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TTTGAGCGTTCTGTAT	alt_110_RC	9	18	8	8	19	5	12	8	17	9
TTGGTCGCTGTGTCGC	alt_110_RC	11	39	21	17	37	6	40	13	36	12
ACTATGGAGCTTGACC	alt_110_RC	22	43	20	25	51	23	33	13	28	15
CATTTGCAGCCCTTGG	alt_110_RC	9	30	5	13	27	10	31	13	25	10
TTCCTGTGAGTTAGCA	alt_110_RC	4	10	5	7	12	6	14	5	13	4
CCCAAACATACGTTCA	alt_110_RC	11	25	12	11	18	14	18	12	20	10
CCGCTGGACGCCATCG	alt_110_RC	15	50	34	24	51	20	62	23	49	29
ATACATCTAAACCCCT	alt_110_RC	9	25	11	16	21	10	20	7	18	11
TTTTTGGCACTGTTGC	alt_110_RC	3	12	3	2	12	7	9	1	11	2
ATGTTTGGCGCCCCTC	alt_110_RC	32	58	58	39	61	53	55	33	55	34
TACGAGAGATAAGGTC	alt_110_RC	4	7	1	6	5	4	9	6	7	3
ACCAAGCAATGCTTCT	alt_110_RC	49	106	56	43	103	50	115	43	109	43
AGGAGTCAGTTGGTAT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TCTAGACTTTAACCGG	alt_110_RC	0	0	0	0	0	0	0	0	0	0
AATGGGTTATACTCGA	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CCTGTTATGGCGCCTT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TCTCAGCTTATCCGCG	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CCCCCTCACGTTACCT	alt_110_RC	3	11	8	2	16	2	11	7	14	4
TCGCCCCACCCGGATC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTTAATTTTTGT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TTACTTGGTTTCGTTT	alt_110_RC	52	82	57	66	74	42	77	54	91	43
CGTGACTTAGGAAACA	alt_110_RC	11	9	8	12	22	17	16	10	21	2
TCTTTCACCTTGGTAA	alt_110_RC	0	0	0	0	0	0	0	0	0	0
ATCTGCTGGGCGGCGA	alt_110_RC	4	16	11	7	14	2	17	9	12	5
GGTTACGTCGGGCGCT	alt_110_RC	2	3	7	2	4	0	1	1	7	2
CACATCAGGTGGAAGG	alt_110_RC	12	37	21	12	36	25	49	27	40	23
TGCTAGGGGGGGAAGT	alt_110_RC	14	18	8	14	15	5	18	11	17	20
TCCTTTTCCTACTATC	alt_110_RC	88	137	97	88	128	82	134	70	118	78
ATTCGTGTTTGATGCT	alt_110_RC	7	22	13	3	22	9	20	7	18	12
GTGCAATGCCTGTGCT	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TTATAATCATGACTGA	alt_110_RC	12	17	11	9	17	6	15	6	17	5
AACCAGGTCATCGTCC	alt_110_RC	10	21	14	14	23	8	24	15	25	14
AATTTAGGTCGGCGTC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TATTCACGATCCATAT	alt_110_RC	6	24	9	15	27	19	32	2	25	6
CCCGTAGGCCCAATAA	alt_110_RC	16	54	17	17	54	6	55	21	58	13
AGGGTAACCTTCGTGG	alt_110_RC	5	5	10	5	16	6	13	5	8	6
ACTTCCTGGTCCCCAA	alt_110_RC	9	12	8	11	15	9	8	9	16	4
ATTTTGTTTCCCCGTA	alt_110_RC	4	36	17	13	53	21	36	10	42	14
GCATAACGTTAAATTT	alt_110_RC	1	4	7	2	12	1	10	2	7	1
GATCCCGGTATTATTA	alt_110_RC	19	17	4	20	17	21	21	7	21	17
AACTTATGTCCCCTCG	alt_110_RC	0	0	0	0	0	0	0	0	0	0
CTCCCGCGTCGCAGCC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
TTCCCCATGGTACCGC	alt_110_RC	0	0	0	0	0	0	0	0	0	0
GCTCAAATTCTGCGGG	alt_110_RC	17	22	20	25	22	20	24	17	34	18
CGCCATCACCAGCTTC	alt_110_RC	23	35	31	18	35	14	40	15	40	16
AGGATGTCAGCTTAAT	alt_110_RC	2	4	6	3	7	14	7	6	9	0
GCACGATTCGAAAGTC	alt_110_RC	38	42	44	39	67	46	69	28	59	54
GGAACCTACCTACTTA	alt_110_RC	2	5	3	1	7	0	4	1	6	2
ACTCACCCCGTTGTCC	alt_110_RC	8	24	9	8	22	9	34	3	28	7
ACAACAGTAGTTCTGC	alt_76_negative	0	0	0	0	0	0	0	0	0	0
CTGCTATGGTATCCGC	ref_76_negative	31	35	23	32	23	16	36	19	42	25
TTTTCTCATGCTCTAG	alt_76_negative	15	28	25	12	25	24	30	26	36	19
GGTCTTCCGCAACTAA	alt_76_negative	21	36	18	12	17	21	24	13	27	25
TAAAGGAGGCAGTTCC	alt_76_negative	10	12	18	11	25	11	12	12	11	4
GAGGTGTCAGGTGTCA	alt_76_negative	18	21	23	16	26	20	24	11	26	18
TCGTAACATGTCTAGA	alt_76_negative	0	0	0	0	0	0	0	0	0	0
ACCGGTCAACAGTGTT	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TATGTCAACAGCTTAA	alt_76_negative	20	27	26	23	31	24	33	15	34	17
AGTCTCCACGTCTTGG	alt_76_negative	113	216	111	129	224	113	232	107	227	80
TTGCTCATCCTTACTG	alt_76_negative	26	41	37	15	50	28	45	20	52	14
TGAAAAGCTCATGGCT	alt_76_negative	9	16	10	9	16	14	12	11	10	10
TGGGCTCGAAGGGACT	alt_76_negative	76	75	59	46	68	57	79	52	71	55
CGGTCCGCACCTGCGA	alt_76_negative	22	19	30	14	35	24	27	18	36	23
CCTCTTGGCCATAGGT	alt_76_negative	49	88	65	49	105	57	113	53	106	71
TCTGCGTATAACCGGA	alt_76_negative	5	6	4	7	5	2	7	8	8	4
AGATGTTTTAAACACC	alt_76_negative	9	19	17	18	27	14	16	9	18	14
TCCCCCGAGCTTGGAT	alt_76_negative	15	17	15	20	24	19	17	14	18	19
GACGCATGGGTTTCCA	alt_76_negative	0	0	0	0	0	0	0	0	0	0
GCAAAAAGACCATCTT	ref_76_negative	25	41	28	31	42	31	47	13	48	22
TGGGCCGTGTAACGTA	alt_76_negative	0	0	0	0	0	0	0	0	0	0
GTAGCGCATCCTAGGA	alt_76_negative	6	25	11	13	17	18	23	14	15	10
CTTGGTCCTGGCACCT	alt_76_negative	6	8	5	5	4	5	9	2	3	2
GTTCGTGGAACGGTAA	alt_76_negative	2	6	5	7	17	4	7	5	13	8
TGCCAAGCTTTTAGTG	alt_76_negative	45	63	55	50	65	41	87	47	91	42
GAAAACTAACCGGGGA	alt_76_negative	19	33	33	27	27	26	29	32	32	14
TACGGAAACTCTAGAA	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TGGAGATGGAACATTG	alt_76_negative	14	12	20	9	17	17	24	11	17	8
TATACGTTTCCTCTAG	alt_76_negative	5	11	2	3	4	2	3	2	3	3
CTCCGTCTTTTCTCAT	alt_76_negative	4	4	15	2	12	4	8	6	8	5
CACCGCCTCGACCGTG	alt_76_negative	26	60	35	17	53	13	62	12	55	16
TAAACCGCGCTCCTGT	alt_76_negative	29	45	37	31	49	29	30	36	47	22
CCTTGTGGGTTGTCCT	alt_76_negative	0	0	0	0	0	0	0	0	0	0
ATTCGGGGGGCTTCGG	ref_76_negative	79	81	71	81	72	82	99	54	98	55
TAATGTTGATGTCGCC	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TTGACCGTTGCCTCCA	alt_76_negative	8	8	6	4	10	8	6	8	10	1
CGGACTTCCGGGTGTT	alt_76_negative	17	32	17	21	32	16	30	21	34	25
TTAACCATGACTTTTG	alt_76_negative	8	10	11	2	17	5	7	10	5	5
TCGTCTGGGGCTCTAA	alt_76_negative	40	51	34	38	57	45	54	34	54	38
GGAACTTGATTTCAAT	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TCTCCAACTTATTCCG	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TGTGTTAATTTCCGAG	alt_76_negative	0	0	0	0	0	0	0	0	0	0
GCCTCATACGTTTTTA	alt_76_negative	23	44	25	24	32	21	31	19	42	17
CAGGATTGGCTGTAAA	alt_76_negative	5	9	2	3	9	6	8	3	9	8
CAGCCGTATAGGCATT	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TACAACAATTGTTCCA	alt_76_negative	28	50	25	23	37	24	49	22	45	25
GGTTGTAGGATCTCGG	alt_76_negative	23	23	18	13	17	14	27	15	26	21
ATCCTGATATCACTCT	alt_76_negative	0	4	1	1	4	2	3	3	7	3
TCCGTGCTATCTTTTT	alt_76_negative	12	6	17	16	17	11	20	9	22	11
TCATGTCCATTGGTTC	alt_76_negative	0	0	0	0	0	0	0	0	0	0
GCGAATTAGGCTCTAC	alt_76_negative	28	50	27	32	27	33	64	24	45	17
AGAACGTGTTTTTATC	alt_76_negative	0	1	1	0	2	2	4	0	4	0
GGCTGAGTCGTGATGA	alt_76_negative	0	0	0	0	0	0	0	0	0	0
CGCGTTAGTGTGGCAT	alt_76_negative	35	45	43	31	48	29	53	26	55	35
GCCGTTTTTCGAGAAT	alt_76_negative	9	10	15	18	22	9	21	8	22	19
GTGCTCCGATCTCCGA	alt_76_negative	15	10	13	13	10	14	17	8	13	18
TGGAAACACCCAATTC	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TAACCGTTGTCAATCA	alt_76_negative	32	24	28	34	35	20	33	14	24	16
GATGCTTTGTGTACGG	alt_76_negative	54	72	69	65	83	64	95	48	122	57
GGCCGAATGGTTCAAA	alt_76_negative	43	47	37	51	69	31	50	36	49	38
AAGATCGGATACGGTC	alt_76_negative	14	19	16	15	9	14	13	10	30	11
TCCTTCCCCCGCCGCT	alt_76_negative	6	13	15	11	19	5	21	8	7	11
AGTTTCCCCACTTGCC	alt_76_negative	0	0	0	0	0	0	0	0	0	0
TGAGTTGCCGTGTAGC	alt_76_negative	4	8	8	4	9	2	8	3	13	13
CATGCAATTACTATTC	alt_76_negative	43	65	56	53	55	50	56	43	49	41
TACGCCGGATGTAGTT	alt_76_negative	57	75	66	64	74	67	65	41	96	51
ACGTTTGGGTTTTTTG	alt_76_negative	2	7	7	2	5	5	5	2	6	3
CAGGTTCATAGTCATA	alt_76_negative	20	24	28	15	23	17	29	8	34	18
ACGCTCGGACTGTCTA	alt_76_negative	16	20	16	13	22	6	23	9	25	7
TGCGTCGATAATTCTC	alt_76_negative	0	0	0	0	0	0	0	0	0	0
CCGTCCACGCATCTTT	alt_76_negative	0	1	0	0	2	1	5	3	2	1
AGGTCACATCGGAATA	alt_76_negative	8	4	6	6	3	5	9	4	10	7
GCAAAGTTTTTTCAAC	alt_76_negative	9	3	3	10	10	5	13	6	5	3
GTAGTACTTGTATACG	alt_76_negative	60	96	70	53	79	40	81	56	69	58
TGTTGGGTGTAAAGCA	alt_76_negative	10	18	17	10	13	11	16	6	13	11
GTCAAAGGGCCATTGT	alt_76_negative	5	11	4	3	11	8	9	6	7	5
CATGCATTAATTTGTA	alt_76_negative	120	179	131	118	173	125	133	112	187	100
GGCCATGGTTGCCGGT	alt_76_negative	41	48	53	46	53	49	48	42	63	26
CCTTAGCTGACCCTAC	alt_1402_upstream	7	5	5	1	4	1	5	8	5	2
ACATCGTTCGTGAGGT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TGGGAGATACCTATAG	alt_1402_upstream	6	12	5	8	10	7	7	8	13	10
TGTTTTCGTTTTGTTT	alt_1402_upstream	25	26	31	24	29	33	23	27	41	20
GCTTGCATGTGCAATC	alt_1402_upstream	6	8	8	8	10	7	6	6	8	6
CCCCCGTCTCCCTCGC	alt_1402_upstream	19	23	15	16	25	16	34	12	24	11
GTCGTACGATTCTTTA	alt_1402_upstream	16	28	23	27	24	27	24	21	28	16
TACCTTCATCTCCACG	alt_1402_upstream	208	291	245	216	357	185	329	180	347	176
GAGTGGTCCTGGCCTA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCGGAGAACTCGTCTA	alt_1402_upstream	13	10	8	10	17	5	16	10	13	7
TATGCTATCCAAGCTG	alt_1402_upstream	38	38	29	36	25	22	29	18	53	20
TTTTGTATTTAATGGA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGGGCCCGAGCAT	alt_1402_upstream	5	7	6	5	7	5	12	7	6	4
CGCGTCACTCCTCTAA	alt_1402_upstream	6	7	1	2	12	5	8	3	4	5
GGGCACAGTTGATTTA	alt_1402_upstream	56	104	76	71	108	72	99	57	111	61
GATGCTTATTCGAACC	alt_1402_upstream	64	79	54	43	99	53	90	37	91	54
ACGGATGGTTTTTTTC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGATTTTACGTTG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
ATACTCTTCGTCGCAA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGCAAGGTCCAAA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TGACGGGGGTCTTGAC	alt_1402_upstream	9	11	12	4	17	7	15	5	20	5
CAGGTTTTATATTGAT	alt_1402_upstream	55	116	75	79	91	53	104	68	109	55
TGCCATGTTGTCATGC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTAGCACGGTACG	alt_1402_upstream	5	8	3	5	7	4	9	6	6	5
CACACCGTATAATTCA	alt_1402_upstream	36	44	28	23	53	21	45	25	64	19
GTCTTATCTACGCCCT	alt_1402_upstream	0	0	0	0	0	0	1	0	0	0
AATAATCTGCATCGTC	alt_1402_upstream	21	26	21	17	16	26	24	13	26	22
AATCGCAGTCATCGAT	alt_1402_upstream	17	17	13	15	17	20	21	16	23	15
GGCAGGATCGAGCAGC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TCGTAGTGTGCTCTGC	alt_1402_upstream	8	12	7	3	12	5	21	5	10	5
TGTTTCATCGGGCAAT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GACTTCGAGTATGGCA	alt_1402_upstream	18	18	27	19	25	15	28	14	36	14
TTCGCGATTACTTCAA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TGCCAGATCTATCGGC	alt_1402_upstream	16	42	26	19	38	14	45	25	45	21
TTGACTATCGGTAGGT	alt_1402_upstream	40	67	59	41	89	39	68	34	53	32
TGCACACTAATTTACA	alt_1402_upstream	34	57	49	29	64	34	58	22	57	36
ATGTTAGGCGATGCTT	alt_1402_upstream	14	9	5	14	10	9	8	4	20	3
CCTTTTCCGACTCCTG	alt_1402_upstream	8	9	5	4	8	8	12	1	11	2
GTTTCCTTTCTCCAGA	alt_1402_upstream	7	13	6	12	12	15	16	8	17	7
CCTGTCCCGGATCTAC	alt_1402_upstream	12	37	15	17	19	15	24	15	33	11
GTCCTCCTTCGTCGGG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTGCTCCTATCGT	alt_1402_upstream	25	43	36	25	46	22	45	21	41	14
AACCCATCGCGTTGGG	alt_1402_upstream	19	23	14	10	21	7	17	19	28	10
CTTTACGATAGACGAC	alt_1402_upstream	5	6	7	15	5	4	7	5	7	6
AGCGGTGCAGTGATTC	alt_1402_upstream	13	22	13	4	15	18	19	16	29	11
CACCCGCGGAAATATT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCTTATTAAATCG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCGTCCGCACGAA	alt_1402_upstream	13	18	18	9	20	8	17	5	20	11
TGCTGCGCCTGCGGAT	alt_1402_upstream	2	12	6	2	11	2	9	4	9	1
ATCAAGGCACGTGGAG	alt_1402_upstream	9	18	19	9	19	15	16	18	12	11
CGTCGTTTAACCTCGA	alt_1402_upstream	3	12	5	3	3	2	6	3	4	1
ATATTTCAGAGAATGG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTAACTAGCAGTG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GATAGGGTAGGGCCAA	alt_1402_upstream	8	14	20	9	10	5	24	14	14	10
TTAACCTCTTGCTGAT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTATTCGTTGACGATA	alt_1402_upstream	3	4	4	1	7	3	3	1	4	4
GAATCAGGGCCGACAT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CATATAGTGGCCGCAA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CCATCGCATCTTCTGA	alt_1402_upstream	5	21	4	12	34	6	27	7	19	3
CTTTAGGGCCCACTCC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGCTTACTTGCCT	alt_1402_upstream	8	19	12	10	19	15	8	9	18	9
GTGATTTGGTCCGGGT	alt_1402_upstream	5	6	4	5	6	4	11	4	7	5
TGCTATCGCATTAGGT	alt_1402_upstream	46	71	79	41	67	49	72	44	79	34
ATCGAAGTGCTGTATA	alt_1402_upstream	7	6	6	4	6	5	14	10	8	4
TGCCTTCAAACAGCGG	alt_1402_upstream	23	56	48	39	54	31	52	35	60	33
AAGAAACTTCATTTTC	alt_1402_upstream	23	23	12	12	19	8	20	14	26	14
GCCACATCTCTTTTAC	alt_1402_upstream	23	36	17	12	37	18	26	18	23	16
CGCATCAACATCGCAG	alt_1402_upstream	0	1	2	2	1	0	0	1	0	0
CCACAGGAATATTTTT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TACGATATTAAACTAG	alt_1402_upstream	2	3	12	5	10	5	8	3	7	7
AGGCTGGTCTATTTGC	alt_1402_upstream	10	8	6	8	8	11	10	9	11	3
TTGGACTCCTAGCGTG	alt_1402_upstream	16	30	23	22	32	23	24	13	23	22
AGAGCGGAAATCCGGA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTCAGTGCGTTCC	alt_1402_upstream	5	1	9	0	3	1	9	4	2	3
GGGTATTACTCACCAT	alt_1402_upstream	6	28	14	5	27	5	30	3	41	6
TTTGCTCCACAGCTCT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTGCTTTTCCTGC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TATCAAATCTCGTGGT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCGATGTGATACTGTA	alt_1402_upstream	11	15	17	11	9	22	17	11	19	11
TGCTACGGGTGTGCTA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
AGTCCGGGTTAACGAT	alt_1402_upstream	33	59	61	46	45	35	77	32	62	64
TCAGTCCTCTTGACGA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTGATTTACCGTCTCT	alt_1402_upstream	138	155	156	123	147	107	171	110	190	118
TACAATTCACGTTATG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTCTATCGTCACATTT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTCGTGACCAGAG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGCTGCTACCGAT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CGATGTGGCTATGACA	alt_1402_upstream	45	51	46	42	63	36	93	39	64	27
GTATTTGTCCCCGTAT	alt_1402_upstream	5	24	5	5	16	4	13	13	13	7
TGTCATGGACCAACTA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CAATTAACTTATTTAC	alt_1402_upstream	8	2	3	1	3	3	3	3	6	3
TGACACCTTCTGGCTT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGCGTTATAAAGG	alt_1402_upstream	27	24	30	28	62	25	45	26	62	18
CCAGATCCCGTACTCA	alt_1402_upstream	49	99	79	75	89	67	104	53	106	61
TTCAGTGGCGCTCAGG	alt_1402_upstream	63	86	89	71	120	56	126	75	117	59
AGTTTAACATTTCCGT	alt_1402_upstream	35	47	43	46	55	51	53	40	54	37
ATGGTACGCTTGTGTT	alt_1402_upstream	18	43	33	23	34	23	48	19	32	23
TGGCCACTAAGCGTCA	alt_1402_upstream	13	15	9	9	11	6	26	7	29	10
AGTTTGGTGATTTCTC	alt_1402_upstream	11	19	16	13	14	13	32	10	22	13
GCAACGTTATCCTTTG	alt_1402_upstream	9	12	11	11	18	15	10	9	23	9
TTCTTGCTATCGGTGT	alt_1402_upstream	16	41	18	23	31	16	14	15	36	13
ATGCTTGTCTAACACC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAACATAAATATT	alt_1402_upstream	42	63	46	35	67	42	72	41	72	43
AGCCGGTATCGTTCAA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGAACGTGGTTCA	alt_1402_upstream	5	6	8	8	3	4	11	5	10	6
CTGCTTTTTACTAGGC	alt_1402_upstream	8	12	4	9	13	8	17	7	7	6
ATTTACTATCAATTGT	alt_1402_upstream	14	32	36	19	31	21	33	16	27	27
GGACATCGAACTGATT	alt_1402_upstream	4	12	3	9	8	6	6	6	9	7
GCAAACCTTTAATTGC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTCCGAGCACTCT	alt_1402_upstream	69	101	52	77	126	55	97	48	118	59
ATTGCTAATGCGGCAA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CACGCGATTTCCATCA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGTACGGCCGTGGTCC	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTGTTAACGTATA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTCAGGACTAGAG	alt_1402_upstream	28	61	40	30	38	23	56	23	45	35
TTACCGAATTAATTTC	ref_1402_upstream	54	47	47	34	80	51	52	45	62	42
TCTGTTGTCCGACTCT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGATGTTATCGG	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCGATTGCGGTTA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTTCGTACCTAGA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
CACGAGGTTCGGTTTG	alt_1402_upstream	7	7	7	6	10	5	3	10	11	2
TTCGATATTTGTGTAT	alt_1402_upstream	8	19	11	10	28	4	19	12	17	12
CAGCGTATTATATAGC	alt_1402_upstream	49	60	54	40	72	39	63	35	89	33
GGCATAGTCTATAGTT	alt_1402_upstream	24	39	17	25	36	24	25	24	34	22
TTCGTAAGGGTTCTCT	alt_1402_upstream	3	4	6	5	7	5	9	4	8	2
GTGTCGGTGTATCATT	alt_1402_upstream	1	8	5	3	10	2	1	1	3	2
CATCGCACTTGTTAAT	alt_1402_upstream	19	24	19	17	26	16	19	21	24	26
CCACGGTAGTCCCGGA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
ACCAGGGCCAGTATCG	alt_1402_upstream	11	24	21	11	30	11	20	12	28	11
ACCTATTAGTGGTCTT	alt_1402_upstream	5	14	9	5	12	12	16	12	11	10
GGCGCATTATTGGCCA	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGACGCAGACCTGCTG	alt_1402_upstream	16	19	28	15	8	18	18	13	30	15
GGTCTGGTCTTTCGAT	alt_1402_upstream	0	0	0	0	0	0	0	0	0	0
AATCTGGATCGTAGGG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
TGAGTCTGTTCAGAAG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
TGGGCAGTGCGGCTAC	ref_5792_new	2	2	3	3	3	3	2	3	0	4
CATATTTTCGGCGGCT	ref_5792_new	53	39	59	47	44	47	50	53	59	50
GGTTAGCTTGGTCTAC	ref_5792_new	18	16	21	16	27	20	28	24	15	15
AGTCTCGTCTCATTGG	ref_5792_new	15	16	13	14	23	9	22	9	25	19
TTGCGTATCGAACCTC	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GTCGCCCAAAATCAAC	alt_5792_new	30	24	30	29	21	29	27	14	19	19
GTATGCAGACTTCCTC	alt_5792_new	27	25	27	25	23	23	30	19	34	26
CGTAAATGTATCTCAG	ref_5792_new	14	14	14	15	19	24	9	19	24	11
CTATGTAGAATTTCCT	ref_5792_new	13	10	9	15	8	16	14	18	14	14
CCTGAAGTGGGCGCCG	ref_5792_new	21	13	23	21	18	15	20	16	13	18
GATTCAGCGTTCGTAT	alt_5792_new	30	33	41	32	31	33	36	35	50	21
TGGTCTCTGCTATAGA	alt_5792_new	137	118	159	137	141	119	165	137	168	142
AGATCGCATTTATCGG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GTAGGTTTTCTTCTTA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GCCTTCTATCAGGGGT	ref_5792_new	25	20	31	22	39	23	24	30	23	18
CACATACGGGGCATGG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
ATGTCCCTACTCCCTT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
ATACGCCAGTGTTTTC	ref_5792_new	22	21	25	33	14	23	28	21	32	15
CAGGATGACGGTTTTA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CAACTTATCGCTACGT	alt_5792_new	12	7	8	10	16	6	19	6	15	8
CTGCGTAGCTGAGGCG	ref_5792_new	25	35	29	27	39	20	15	23	19	19
CTCTCTATAGTGACGG	alt_5792_new	119	120	127	140	151	124	156	126	162	105
CGCGCTATCAGGTCCT	ref_5792_new	22	17	27	24	18	24	34	23	23	8
GGCGGTCAACGCCAAT	ref_5792_new	65	49	66	59	45	45	62	50	69	52
CCCTGGGTGGTGGTAG	ref_5792_new	20	30	22	13	30	11	21	15	24	13
ATCGCGATTTAGCTCT	ref_5792_new	113	76	126	132	108	93	86	120	97	110
GCATGGTGCGTTATCT	ref_5792_new	67	53	54	78	48	64	61	51	65	56
CCGGGGGGTCCTGCAG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GGCGAACCGGTCTCCT	ref_5792_new	28	27	28	32	24	24	24	19	23	24
CTATGCTGACGGTTAT	alt_5792_new	17	21	24	24	21	21	16	21	30	13
ACATGATTCTATCATA	alt_5792_new	25	15	26	13	19	18	14	8	25	14
GATTTTGAACTTGCTG	ref_5792_new	55	45	58	51	38	45	54	44	49	44
TTTTAGGAATGCTCGC	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CATACGAGAATGCAGA	ref_5792_new	42	26	52	40	33	40	36	35	33	41
GTGGCGGTATTCGATT	alt_5792_new	229	276	255	220	274	224	262	169	277	209
ACAACCGTCATTTGTG	ref_5792_new	17	21	9	10	9	11	17	10	15	11
TTCGTGATCGCGCGGC	ref_5792_new	8	9	13	13	12	8	9	14	16	9
TCAGTTGACTTTGCCA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GACGTCTTTTGTCCAA	alt_5792_new	67	46	57	37	45	41	59	34	55	46
AACCGTCCGGTTTTGA	ref_5792_new	17	14	31	14	22	10	12	14	15	10
GTGTTATAATTTTAAT	ref_5792_new	70	75	101	84	68	69	68	64	73	56
CATTATTAAGCATTGG	ref_5792_new	13	8	10	6	6	9	13	12	6	6
CGTTTGTGCTAAGTTC	ref_5792_new	38	32	29	18	27	26	20	31	31	31
GTCGTTCGGGAATCAA	ref_5792_new	6	8	8	1	5	7	5	8	1	5
CGCTTCGTTTTATGAT	ref_5792_new	184	215	239	181	227	193	236	182	248	155
CTTGCATCCATGTAGT	ref_5792_new	21	22	27	21	18	22	15	20	25	23
TTAATTCTACCCAGAG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CTAGAAATGATAACTG	ref_5792_new	25	51	35	33	26	38	43	26	42	35
AGAATGGCATGGCACA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
TGCACGGGCAAACTCC	ref_5792_new	32	23	37	21	23	25	31	15	24	27
TCGTTGTTCTAGATTA	ref_5792_new	7	2	2	0	7	1	1	2	1	3
ATTCTGTCCGTTGATT	alt_5792_new	41	44	44	32	34	46	32	41	53	28
CTGACAGTTGAAGAGA	alt_5792_new	37	44	37	46	53	43	48	40	51	29
GTGGGTTCAGTCATAT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CGGGTACCAAAGTCCT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GGTTCTGCTCGTGAAT	ref_5792_new	19	27	24	28	32	29	27	31	29	20
ACCCGCTATTAAATGC	alt_5792_new	203	161	264	231	177	207	215	220	183	203
TGGTATACCGTAATCG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GTCAATACACACCGTT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GACGCTATTGGCAGGA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GCATGGTTCCATATTT	alt_5792_new	69	85	105	84	74	47	84	62	71	56
TTGCCAGAGTTTTTGG	alt_5792_new	144	144	189	146	141	138	168	138	171	134
CAGTCCGTCTTTCCCT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GTTGATGTGTGACTGA	ref_5792_new	18	22	25	17	20	16	17	7	19	16
AATGGATGCTCTCTTA	ref_5792_new	11	9	11	9	11	15	6	12	6	7
CTGAGTCATGCCATGC	ref_5792_new	47	32	42	36	30	35	25	31	39	33
AGTCTTGCTTTACCAT	alt_5792_new	3	2	2	5	6	6	3	4	5	2
AGACTAAATCCTGCCA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
AAACTCGCGACCAAAG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CTAATAGCAGTATTGG	ref_5792_new	17	28	32	36	36	28	29	21	34	25
TCCGTTCTAGCGCGTC	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GGTTCACATATCGGTC	ref_5792_new	0	0	0	0	0	0	0	0	0	0
AGGTTACGATTTGCGG	ref_5792_new	74	75	72	79	67	69	70	58	79	71
TTAAGAGGATTGGCAG	ref_5792_new	76	77	68	75	55	66	80	70	83	55
GAGGTACCTGAGTTAT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
TTTGTTCTCTTGGTCA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CGATCTTTCGAAAGCT	ref_5792_new	17	27	28	18	19	24	23	25	27	23
GTTTTTGGAGATTGGC	alt_5792_new	69	58	59	68	50	58	59	41	65	46
AGAGAGCGGACGCGGG	alt_5792_new	11	6	14	12	7	10	7	10	17	10
CGGCAGCCCGATCGAC	alt_5792_new	63	41	46	52	52	55	41	68	52	50
GGTCATCAATTCCGTA	ref_5792_new	19	10	19	10	12	5	20	6	17	10
GATTGGATTGGCACTG	ref_5792_new	6	9	12	4	13	6	14	11	10	4
GGAGTCCGGGTCCTTA	ref_5792_new	32	24	20	30	19	24	34	35	33	32
TTCGGTCATAGGATGA	ref_5792_new	12	8	6	8	14	8	7	9	12	2
CATTTCCTGTAAAAAC	ref_5792_new	25	23	22	24	33	26	37	24	29	20
CGTACTTGTAATGTAT	ref_5792_new	49	38	48	40	46	30	51	40	42	29
TTGGTAACTTATCTTA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GATCAGTTGAAAACCG	ref_5792_new	27	33	26	42	27	34	29	26	37	20
CTACAGTCTACTCCCC	ref_5792_new	4	17	3	5	9	0	15	7	15	4
ATCCCGCGATACTGCT	ref_5792_new	32	32	32	46	43	36	46	35	35	37
TCCCGTACACCTCTTC	alt_5792_new	48	43	39	27	31	25	38	22	24	30
ATATCATCTATCGTCA	ref_5792_new	6	11	9	10	12	9	12	10	20	10
GCAATAGAGCGTCACA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
TTATGAGTTAATAGAT	ref_5792_new	35	56	54	51	44	34	57	46	66	50
CCCTCCACATGGAACT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
TGGAATCCAACAGTTT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
ATTATATGTACATTCT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CGGTTGCTCTTTTGTG	ref_5792_new	4	7	7	15	6	11	6	4	9	9
ACCGGAGATGCTTCAC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TCCGTCGTGGAAAGGT	alt_5792_new	6	14	5	12	14	14	20	5	14	2
TGAGTAAGGCCGTTAA	ref_5792_new	71	93	79	75	66	74	69	63	79	62
TTCCGGTACTTTACTT	ref_5792_new	4	3	0	0	6	1	5	2	4	1
TTGCACAAGAATTATT	ref_5792_new	4	4	3	2	3	3	3	3	2	3
CATAACTCTTCGTAAG	ref_5792_new	44	46	56	47	49	42	50	35	51	38
GTAGAGTAGTGCATTG	ref_5792_new	23	20	13	21	13	14	24	9	17	11
TCCCGACCGGGACGGA	alt_5792_new	16	28	25	31	26	28	21	15	29	24
CAGATTATCTTTATAG	ref_5792_new	10	18	14	18	10	14	15	10	18	6
TAAGCTTTCCATACCT	ref_5792_new	64	83	92	95	84	62	84	87	98	46
TTGCAATCGAAGGTTC	ref_5792_new	169	177	201	183	172	171	154	140	167	152
CATGCTCTATGCTCTT	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GCGGTCGTGGTGATGC	ref_5792_new	39	34	46	37	27	28	28	21	26	29
TTGGTACCTATCTCGA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
AATTCCCCTATACAGG	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GTCAATAGTTCTCCGC	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CCTACTACTGTTTTTA	ref_5792_new	0	0	0	0	0	0	0	0	0	0
CCAAGGGTTCCTCCGA	ref_5792_new	55	52	61	47	66	54	78	48	56	49
GCTTAAATTAATGTTC	ref_5792_new	27	43	43	34	26	20	38	27	27	24
CAAGTAAGCGACGGTT	ref_5792_new	10	5	9	13	9	6	8	4	10	8
CCTCCCATTTATTCAG	ref_5792_new	26	53	24	28	62	23	43	29	54	20
GGCTGGCCTACCAGGG	ref_5792_new	74	72	80	86	60	82	76	85	61	74
CTTAATAGCGATGTCG	ref_5792_new	17	11	14	8	14	13	9	6	6	9
CTACTTCCAGCCAACC	ref_5792_new	22	48	56	45	53	28	43	35	54	33
TACTCATCGCCACACC	ref_5792_new	0	0	0	0	0	0	0	0	0	0
GTTAATACTTTGCCTG	alt_5792_new	54	52	54	46	64	51	59	58	41	41
GCTGGAAGGCGTTCAT	alt_904_fdr	179	59	219	199	69	191	64	157	60	167
TCACGCTCTGGAGTAT	alt_904_fdr	45	17	44	35	21	37	23	53	20	42
CAATATGGGTGTGTTG	alt_904_fdr	229	97	262	269	130	213	107	202	140	209
TGTATTTTGATTATCA	alt_904_fdr	245	93	272	232	90	235	106	223	92	205
GGTTCGAACCGCGGAG	alt_904_fdr	18	15	15	12	12	15	14	18	19	12
GGTCCCGTTCGGAGTA	alt_904_fdr	89	31	116	86	33	94	26	75	42	72
ACTGATCCTAATTGCG	alt_904_fdr	124	102	121	117	113	110	115	90	104	87
TCGCCCGGCTTAACTT	alt_904_fdr	540	173	699	591	152	538	193	523	190	531
GTACGGTGCTAAAAGC	alt_904_fdr	83	38	128	108	53	83	25	75	35	78
AACAGTATTGGTGGTG	alt_904_fdr	0	0	0	0	0	1	0	0	0	0
GAGGACCCGAGCATAA	alt_904_fdr	27	11	27	29	6	17	9	24	5	17
GTCACTCTTATTTTTG	alt_904_fdr	69	35	81	70	20	68	25	56	21	41
GAACCTTCATACCAAG	alt_904_fdr	181	62	227	188	62	167	70	177	73	113
TGACGGTGATATCGTG	alt_904_fdr	122	32	173	92	40	117	58	73	38	103
AGAACCAGGCTGAGAT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCCCAGTGTCAAT	alt_904_fdr	32	17	41	40	34	30	14	38	26	35
GGCAAAATGGCAAAAA	alt_904_fdr	793	276	853	779	251	725	282	674	264	690
CCTAAGTTGTGAGCGT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCCACTGTGGTCC	alt_904_fdr	98	33	126	92	33	120	34	88	44	92
CATTTTGACATCCATG	alt_904_fdr	565	196	611	594	199	519	231	545	219	470
CCGCATCACCGGCAGG	alt_904_fdr	16	16	16	14	19	12	12	14	12	14
AGGTCTGGATTTTTAA	alt_904_fdr	53	22	69	62	25	68	13	52	16	67
ACATGGGTGGGAACGC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTGCTTATAATAC	alt_904_fdr	191	103	249	220	100	196	114	187	114	227
TATATTGACCGTAAGT	alt_904_fdr	50	25	59	52	17	50	17	55	13	38
CGTGGATAGCTGACGT	alt_904_fdr	140	63	225	190	53	149	56	140	70	127
ATGAGTGTTTGGATGT	ref_904_fdr	1110	168	1341	1086	136	1103	160	1120	134	1050
GTAGACGAATGTCGGC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTATATGTGTCCT	alt_904_fdr	12	5	24	18	7	15	8	18	11	18
CGTTTCGGAGCTCCTG	alt_904_fdr	57	14	62	41	15	60	21	44	17	49
GCCTCTGCATTGTCCA	alt_904_fdr	56	17	52	61	25	56	26	47	29	52
CCGCCGGAGATCAGGT	alt_904_fdr	42	13	58	42	13	33	17	27	12	36
CGGCCTCACCCTTTGT	alt_904_fdr	148	80	203	160	75	162	74	158	88	138
TGGACTCCTGTTGCGC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGATTTTTCATCA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGGTTCGCTGTTT	alt_904_fdr	0	0	0	1	0	1	0	1	0	0
TACCGGAAACTAACTA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGGCATTCGAGTT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
CCGGACAGTTAAATCG	alt_904_fdr	66	28	86	75	25	65	30	49	13	70
ATTACATTTTGTTTTA	alt_904_fdr	141	41	191	161	52	144	44	136	57	121
GCCCGTGCTAAATGGT	alt_904_fdr	315	93	432	380	137	347	131	327	116	286
AACCATTTCCCTCTAT	alt_904_fdr	156	53	197	157	50	150	50	132	55	136
ACTGGTGAAAGTTTCC	alt_904_fdr	35	12	39	34	13	42	13	34	8	36
ATAAACCTTTCCCCTT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTCCAACCCACGG	alt_904_fdr	35	15	56	49	19	44	20	55	14	39
TGGAAATTAGATAGTA	alt_904_fdr	127	44	141	120	52	119	48	108	37	113
GGTGTTGCTACGACTA	alt_904_fdr	105	42	129	128	29	97	49	114	39	107
CAATCCTATCCGCCAC	alt_904_fdr	57	17	62	55	17	41	14	41	12	40
TCTTCTTGTTTTTAGG	alt_904_fdr	63	15	53	64	21	55	15	61	26	56
GTTGTAGTTAGTTCGT	alt_904_fdr	153	66	222	179	64	159	68	172	71	124
AATGGGGTGATGATCC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
AAGATTTGATCTATTG	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
TCAATTCTTGATGTCA	alt_904_fdr	140	56	199	148	70	140	58	125	70	125
CTTGAAGTAGTATTTC	alt_904_fdr	232	74	242	218	67	235	101	184	85	197
TCCGGTATGCTCGCAT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
ATAGAACTCAAGTAGC	alt_904_fdr	8	2	8	2	4	7	7	5	3	2
TGATCTTCAGTTGCAT	alt_904_fdr	830	264	985	825	341	764	293	723	326	708
TGTCGATGAGGCTTTC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
CAGAGGGCCTTCATTA	alt_904_fdr	45	19	63	41	12	39	9	46	12	27
TATTCAATCAACAATA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCAGAATCTGCCA	alt_904_fdr	346	104	374	346	80	304	111	296	102	249
CTACTCCTTATACGAG	alt_904_fdr	17	4	20	22	9	18	12	15	12	9
TCATATTATAGGTACG	alt_904_fdr	243	80	285	220	105	242	89	228	77	226
GCACCGGCCTGAATTT	alt_904_fdr	42	19	57	50	27	42	21	54	22	46
TACTCAGAGCAACGTA	alt_904_fdr	132	49	179	146	45	130	47	107	60	121
GTGCATAGTTTATTGG	alt_904_fdr	199	51	183	165	57	158	84	138	70	149
CAGGCGTGTAACGCCA	alt_904_fdr	186	73	215	181	66	156	76	174	74	152
TGTTCGCGTTTGCCAA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
AACAGTATTGGTGGGG	alt_904_fdr	1062	350	1320	1137	367	1103	383	1000	369	984
CCCTTCAGGCGGTCGG	alt_904_fdr	19	9	33	28	12	31	13	17	20	20
TGTTCTGTAATAAATG	alt_904_fdr	17	5	24	23	7	23	8	19	5	12
CCAATAGCTCCAACTA	alt_904_fdr	52	17	83	44	23	50	31	58	25	49
TGTCTTTACTGGAGGC	alt_904_fdr	136	52	170	156	55	110	44	139	43	101
TCTATCTCTGGTCTGC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
GCATAGTACGATTAGT	alt_904_fdr	194	67	233	183	49	176	95	170	56	158
GGTTGTTAGCCGATAC	alt_904_fdr	179	81	269	229	75	234	77	209	91	213
AGGCTTCCGCTCCTAC	alt_904_fdr	416	161	496	425	141	383	158	384	175	367
GGGCCTGGATTCCATT	alt_904_fdr	122	43	164	175	54	141	53	155	67	113
CGTCAGAATCTATTCT	alt_904_fdr	17	4	23	25	9	20	9	23	10	18
CCCACGGGCACTGTCT	alt_904_fdr	26	8	30	24	14	41	7	26	9	17
GGATTCCACCCCCAGC	alt_904_fdr	129	33	132	109	26	109	32	100	21	98
CACTTCGCGCCCTTTT	ref_904_fdr	1546	166	1743	1477	139	1418	173	1346	159	1379
TATGACGAGTTAATAC	alt_904_fdr	136	44	166	135	35	171	41	121	53	152
GGACTCATACACCATT	alt_904_fdr	159	54	189	143	67	152	63	124	60	129
CATCCAGTAGGAGGAG	alt_904_fdr	99	28	118	83	34	82	35	78	45	73
GTTTTCGTGCAAAGGC	alt_904_fdr	121	46	126	104	40	110	46	91	47	124
GCTATGTCTCTTCGTC	alt_904_fdr	24	14	23	20	6	17	2	19	6	17
TGTAGGTTAAGCTTAG	alt_904_fdr	144	65	172	119	61	156	51	129	58	106
GTCCGCCAGCTCTAGT	alt_904_fdr	23	8	26	16	6	9	2	10	4	8
GCATAATTCTGACTCC	alt_904_fdr	91	34	119	96	41	89	47	86	37	84
CGCTTATAAATGGAAG	alt_904_fdr	430	259	527	495	233	434	291	461	281	361
CAACCACGTTGGGTGT	ref_904_fdr	1126	170	1275	1173	196	981	196	1067	197	991
ACGAGGACTACCCGGA	ref_904_fdr	1174	132	1487	1305	135	1163	151	1208	159	1055
TTGGGCTATTCTAAAA	alt_904_fdr	32	9	29	20	4	23	4	19	10	19
CTTCTAACGTTCAGCG	alt_904_fdr	108	25	123	100	56	111	36	99	45	86
CTGCCTATGGCCCGGC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
CACGAGCATGGCCAAT	alt_904_fdr	104	37	129	104	30	99	33	85	26	90
TGTGTTCACGGCGAGC	alt_904_fdr	269	121	337	262	118	290	122	244	105	219
TAGATTACATTACTGG	alt_904_fdr	53	29	74	60	25	44	21	43	12	41
GATGCTGTTTTTATAA	alt_904_fdr	11	1	13	9	1	5	1	16	4	6
GGGGGGTACCTTTTGT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGTACATGCATTC	alt_904_fdr	6	4	8	5	5	6	2	7	1	8
CTTTGCCCCCGGCCTT	alt_904_fdr	95	39	125	119	36	99	37	125	39	99
TTCGTCATCCATTGTT	alt_904_fdr	6	3	15	6	2	5	3	5	2	8
TCGCATATATTTGGTA	alt_904_fdr	142	35	175	118	61	155	57	126	60	106
GCCTCGATACTCGGTA	alt_904_fdr	70	14	63	65	26	68	22	57	18	53
CAGGTTATTTGGCGAC	alt_904_fdr	100	35	108	107	33	88	33	99	33	114
AGCCTGATTTCATTGT	alt_904_fdr	88	45	115	112	32	90	35	92	44	102
ATCTTCCATGTGATTG	alt_904_fdr	57	24	91	60	25	58	18	66	31	46
ATCTAAGGAAGAAAGT	alt_904_fdr	91	37	97	112	43	96	31	95	48	75
TGCTGTGGGATCGTAC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTCCTTGATCATG	alt_904_fdr	97	36	124	109	34	108	53	110	43	92
TCCGCAGCTTTTCAGA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
CTTAAGTTGATATGTG	alt_904_fdr	52	26	79	58	27	59	28	71	25	65
GCTCTGGTTAAGTCGA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAAACCTAGCCTG	alt_904_fdr	298	107	410	317	140	316	124	306	114	295
TTGTGACACTTGGATT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
CGACTCCTCGGCATTT	alt_904_fdr	107	56	123	97	55	77	37	87	53	85
CGATGTCGATCGCAGT	ref_904_fdr	0	1	2	4	0	0	0	3	0	4
TGTTTCATAATTTTGT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
GATTGATAAAGCGGTG	alt_904_fdr	236	86	314	236	85	231	87	204	101	187
CTTACGTTCGGCTGGC	alt_904_fdr	65	30	77	73	25	52	20	55	26	56
AATAAGTGCTCCACTG	alt_904_fdr	25	9	49	47	17	42	19	25	10	37
AGGGTTGAGCCTTTCT	alt_904_fdr	28	17	43	30	16	21	19	32	9	29
ATCTCAGACACCGTAA	ref_904_fdr	76	21	92	90	29	78	24	72	20	61
TTTGTTCTAGACATAG	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCACTTTTTACGT	alt_904_fdr	33	7	24	27	6	19	12	25	4	38
GATCGCTAGACATTCC	alt_904_fdr	19	14	29	36	4	29	9	21	7	21
TTTCTCGCTCCGTCTG	alt_904_fdr	97	45	105	81	48	84	34	96	46	87
TTCATTCGCGGTTAAT	ref_904_fdr	3380	408	4124	3591	400	3369	431	3184	449	3052
CGTTCCGAGTACGTAC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCCTCCCCACGGT	alt_904_fdr	124	65	179	131	73	117	90	114	75	134
TGTTGTGCACCTGCTG	ref_904_fdr	70	24	74	40	23	56	38	50	35	55
CTGGTTCCGTAGTTGA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTTCTAACTCTT	alt_904_fdr	258	92	341	256	60	263	85	216	94	209
ATGCAAACTCAGTTAG	alt_904_fdr	109	27	135	123	37	104	50	113	42	111
TTGTGCAATTAGTTCA	alt_904_fdr	1013	454	1182	996	423	892	430	965	427	833
AGTTGTGGTGTTGTCT	alt_904_fdr	433	170	531	448	175	430	185	416	197	403
AAAAGGTTTTGCTCAA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
TGTATAGCCCTGGCCC	alt_904_fdr	22	8	37	33	7	21	9	25	11	24
GATACCACACATCCAA	alt_904_fdr	8	3	10	4	1	10	2	9	1	8
ATCTGCGATTTCGTGT	alt_904_fdr	157	51	181	137	68	164	75	142	67	123
TGATGGAATAAGCCCT	alt_904_fdr	104	39	140	98	39	106	34	133	45	94
TGTCGAGGAGCTATCG	alt_904_fdr	281	119	354	287	136	290	122	271	146	268
GCTTCTCTTTCTGTGG	alt_904_fdr	168	48	234	156	60	144	52	169	63	156
GACAATCAATGAGTAG	alt_904_fdr	6	4	6	4	0	6	0	4	3	8
GGGGTTCTTGCCTTGA	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGAGTATCTTCAT	alt_904_fdr	134	45	165	112	32	110	50	122	42	121
TATGTGAATGTGTGGC	alt_904_fdr	203	71	268	250	82	216	82	183	94	135
AGGTCCCGTAAAGCAT	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGTCCTGCGTATC	alt_904_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCAATCGTCTATG	alt_904_fdr	27	7	27	23	11	22	6	13	3	22
ACATTTACCCTACCGA	ref_904_fdr	804	109	1023	886	96	773	91	730	108	718
TGTGAAGCTGACCAGT	alt_904_fdr	0	5	1	0	2	0	3	0	2	0
CGTAACCTAATTGGCA	alt_904_fdr	34	11	51	39	12	45	10	52	27	43
TTCAGGAGTGATGGTA	alt_904_fdr	53	17	68	63	24	73	20	60	25	60
TTTATAGCTTTGTTCG	ref_904_fdr	2293	264	2877	2275	265	2317	286	1766	342	2079
CGACATCTTTTGCGGA	alt_904_fdr	63	22	86	77	35	79	26	86	28	69
GGGATTTAATTCGCGT	ref_2069_RC	8	10	11	7	7	9	9	15	6	8
TGTGTGGGTTGAACTT	ref_2069_RC	33	41	36	32	38	33	41	36	47	33
TCTGACCTCGCTTCCT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GCTTTATGGTTTAGAT	ref_2069_RC	20	35	31	35	27	21	37	30	37	27
GTTTTTCTCCATCGCC	ref_2069_RC	52	55	63	53	47	29	45	42	44	36
CCTATTGTAATTCTAC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GTGTCGCTTTTCATAG	ref_2069_RC	20	16	42	32	27	32	17	38	37	32
ATCGGTATAACTCTAA	ref_2069_RC	73	61	88	74	50	71	67	77	73	61
TAGGTGACTAGGCATT	ref_2069_RC	63	52	70	61	40	53	53	57	63	58
CCTTTCAAATGGTCAA	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGAACTGTTTCG	ref_2069_RC	7	3	13	6	9	4	3	3	5	9
GTCACAGACAGCTTGG	ref_2069_RC	9	8	6	8	4	4	7	6	9	3
TTCGTGCCGGTGGGCC	ref_2069_RC	15	22	17	19	27	27	30	22	28	24
TTAAGGCCTAGGGGAT	ref_2069_RC	120	121	164	143	108	127	135	143	134	125
TCACCGCGTGGTCGTC	ref_2069_RC	47	44	41	42	43	38	44	40	63	36
TCTAGTTTTTAGTTTT	ref_2069_RC	25	20	35	21	11	22	26	19	24	11
GCGGAACGTCGACGGG	ref_2069_RC	61	61	90	75	63	65	76	59	63	67
AGCCCATCGCAGGGTA	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
TTGAACGTTTATCAGA	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GGCCCTGCGTTCAATT	ref_2069_RC	4	5	6	7	2	8	5	8	7	6
TTGACTGTAACTCGGT	ref_2069_RC	9	9	20	8	14	9	8	10	7	14
CTCTATTTGTCCGAAT	ref_2069_RC	0	0	3	4	3	4	3	0	4	2
GGAGCTCATAGGGGCC	ref_2069_RC	58	47	81	74	56	57	47	65	63	57
AAGTATCTGCATCAGT	ref_2069_RC	22	21	30	20	25	19	24	21	19	16
GTAGCAATGAAGCTTT	alt_2069_RC	267	109	310	265	111	254	139	279	104	222
GCGAAGAGCGGCGTCG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATTGTACTCCCCCGTA	alt_2069_RC	73	84	95	83	109	62	106	78	121	58
ATACCACGTTAAACAG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CTCCCAAAGTTTTTGT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GGTTGGACACCGGAAA	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ACTACAATATACGTTT	ref_2069_RC	16	22	41	33	34	31	23	37	28	20
TCATCCTGGGTCAGCT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATTGTACTCCCCGTAA	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATCTTCTCCTTACATT	ref_2069_RC	40	37	43	43	50	38	36	46	54	31
TTCTCTGCTCATTCCG	ref_2069_RC	43	39	69	54	35	46	61	55	36	43
TTAACTCCAGTGGGGG	ref_2069_RC	37	36	38	39	37	41	37	38	39	37
TCTCTCGCTAGATGTC	ref_2069_RC	25	28	25	34	14	21	15	24	29	21
CGGGGTCGGAGTGGTT	ref_2069_RC	30	24	33	35	24	27	20	35	20	29
TAGTAGAATCTCACCC	ref_2069_RC	63	51	64	49	27	35	44	39	41	47
ATTGGTCCCCTCTCTG	ref_2069_RC	36	46	53	63	45	47	39	41	34	54
GGTTACTTCTCCCCGC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GGATCCACTTCCGCGC	ref_2069_RC	57	61	66	76	72	42	92	46	67	49
ATGGCCAACCCATTGC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATTTACGCACGTGTGC	ref_2069_RC	19	8	25	12	17	26	12	24	13	15
GTGTCTTCCAGGCTAT	ref_2069_RC	15	24	36	36	31	18	28	22	23	25
AGGCTTTGAACCACGG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
AGGCAGACTGTTCTCG	ref_2069_RC	50	29	51	38	24	38	48	43	46	41
CATTCAGTAGCACCTG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
TAACTTCTCAGGCTTT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CTAGCAATTTGGTGAT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GCATCCTACTTCGTAA	ref_2069_RC	62	82	81	89	69	61	59	61	81	72
GCTCTACAATGATGCC	ref_2069_RC	17	9	16	21	13	19	17	11	16	14
GTCGGCGCTGCAATCG	ref_2069_RC	198	178	267	204	187	217	199	205	191	208
CTGGCTGTTGTTTGAG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
TTGATAACAGTGGCCT	ref_2069_RC	289	228	360	266	181	264	257	172	246	228
TAGTATTATCGCTCTT	ref_2069_RC	1	6	0	0	5	0	5	1	5	0
TTCACGTATCCGGTAC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CTAGATTAATAGCACG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATGTCGAACAAATGGA	ref_2069_RC	18	11	8	14	16	7	11	6	10	9
GCATTCTTTACTGTAA	ref_2069_RC	54	45	59	35	47	50	48	49	59	36
CCGAGCGCTGTACCAA	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATTGTGGGTCGCTTGG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GCTTAACAATTCCAAC	ref_2069_RC	110	105	136	130	100	124	118	96	124	114
AGTCTGGATTTCCAAC	ref_2069_RC	27	33	31	28	29	17	27	28	27	22
GCCCGTGGGTACGAGG	ref_2069_RC	32	37	50	37	34	41	33	37	44	32
AGAGTCCCCTTAGAAG	ref_2069_RC	84	96	85	80	110	85	92	75	95	51
GTCCGGTTACCAAACC	ref_2069_RC	55	51	63	51	71	58	63	56	55	41
ACCTGGTCGTACGGAG	ref_2069_RC	10	15	6	8	13	11	9	10	10	5
CGGGTATAATTGTTCT	ref_2069_RC	6	3	4	1	2	4	3	10	2	6
ATCGTTCGGTTAATCC	ref_2069_RC	28	25	45	31	40	39	34	32	28	30
AGTGGTCGAAGGCTAA	ref_2069_RC	30	15	39	27	22	20	18	21	13	14
TCCTCACGGTATACGT	ref_2069_RC	121	138	139	125	150	134	170	125	186	98
GTACGGGACGTAGCAT	ref_2069_RC	109	71	132	97	76	103	70	82	100	106
GCAAGTCTTAAGGGGG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
TAATCTTAAACCCGAA	ref_2069_RC	150	117	185	155	144	139	115	143	112	132
AATCTGTAGTCTTACC	ref_2069_RC	29	27	29	26	26	22	22	19	42	19
TGGGCAAAAAAACTGC	ref_2069_RC	11	3	15	17	12	7	18	14	9	9
TTGAGCTGTAACTTGG	ref_2069_RC	216	171	316	232	206	211	175	224	195	174
ATGCTCATCAGGGGAG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GTTTTCGTGAAGGCTT	ref_2069_RC	22	38	34	43	35	39	22	34	27	24
ATAAGGCCTAGGGGAT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GTCACATGCAGGTTTC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
TCAGGTTTCGATTCGC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATATCCATTTTCTCTG	ref_2069_RC	80	45	102	60	64	69	48	53	61	75
CTACGCTCTGGCTTGT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
AGCTAAGGCTTACATT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GTGTTCCGGTTTAGTA	ref_2069_RC	29	25	17	16	19	24	24	22	25	21
ATACACATTAAATTCA	ref_2069_RC	0	0	0	0	0	0	0	0	0	1
CATTGCGGCCTAAAGG	ref_2069_RC	43	57	68	44	40	53	43	43	52	44
GCTATGCTCTACTGCG	ref_2069_RC	20	19	32	17	13	23	6	25	19	17
ATTCTGTGTTCTTTAC	ref_2069_RC	30	22	32	26	34	23	40	32	32	22
TCCGCACTTGCCAGAG	ref_2069_RC	100	77	98	91	77	85	101	105	100	74
ATCGTCGCATTTGCGT	ref_2069_RC	84	71	98	88	87	92	93	66	87	109
TAGAGTTTGCCGACAG	ref_2069_RC	111	121	163	146	127	119	144	88	139	119
ATTTCTCTGCCCCGCT	ref_2069_RC	23	19	24	28	25	17	19	26	29	20
AGAGGTATGTCCCTAG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
TCACTTCCCTTCCGTT	ref_2069_RC	106	83	116	99	81	83	81	84	71	79
TCTGGCTCCGTGGGTT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GGTTGACGGGCGGGGG	ref_2069_RC	40	32	37	36	34	36	22	34	17	34
CGCGGAAATGGCTATC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GCACCAGAGAGCTTCA	ref_2069_RC	63	56	99	77	49	72	60	53	51	63
ATGCAATATCTCGGAA	ref_2069_RC	1	4	3	3	5	1	5	6	3	2
TGTGGGTCAATTCGTC	ref_2069_RC	143	182	245	211	186	203	155	201	169	185
CAATCGCCCTATCCAA	ref_2069_RC	23	26	36	33	17	34	37	29	20	17
AACCGCGTCAGGTCAC	ref_2069_RC	180	106	175	167	135	147	126	151	118	143
GTGAGGTTCTTGAGTT	ref_2069_RC	14	13	27	14	17	16	23	13	19	10
GTTTCAAGCAGAGCGC	ref_2069_RC	20	18	28	16	18	17	22	28	24	18
CCAGTTATATTTGCCA	ref_2069_RC	7	45	6	12	58	8	33	14	43	6
CTCGCATCGGGAGCGC	ref_2069_RC	34	37	38	33	57	44	34	27	32	35
TCTTGACCCAGACATA	ref_2069_RC	26	14	32	34	22	19	25	32	22	20
AGAAGTTCTTCATAAT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
GGATCGCCGCCCCAAC	ref_2069_RC	29	18	30	30	14	26	23	28	17	21
GATTTTATGATGTCGC	ref_2069_RC	46	37	52	51	32	35	27	52	32	41
ATGAGCAATCGCCGTG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CGGGTAACCCCCTGGT	ref_2069_RC	167	138	218	191	130	196	144	152	162	152
GGATCGCTGGGCTATA	ref_2069_RC	57	67	88	87	61	75	73	80	65	75
CATATAAGCGCCAAAT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATCCGGATAGTCAAAG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
TACTGACGGATTCTGG	ref_2069_RC	17	8	19	14	12	18	11	14	17	15
ACAACGCTAATTTACA	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
ATATTGGTATGCACAT	ref_2069_RC	59	50	56	57	49	64	39	36	50	47
GCCAACTGGTACCGGT	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
AGTCAGTGCGCGCACA	ref_2069_RC	73	79	73	91	75	70	83	68	61	76
CCGTTCCTTACGCCGG	ref_2069_RC	2	10	7	0	9	4	10	2	12	0
ATATTAGTGCAGTCCC	ref_2069_RC	33	31	43	24	34	28	34	38	44	34
CGGTACCTACACAAGG	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CTATTTTTGTCCGACG	ref_2069_RC	39	44	69	43	40	45	53	52	59	41
GTGCCCAGTCTAGAAC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CCTTACGGTCGAGGGT	ref_2069_RC	69	76	91	71	73	76	69	77	65	67
CACCAGAGTTCCGTCG	ref_2069_RC	169	185	197	197	137	171	173	177	197	166
ACTCTATTCCCCGCTG	ref_2069_RC	188	174	197	194	262	142	212	189	216	154
TCCTTCAACTAATTCG	ref_2069_RC	5	6	7	7	7	5	4	6	9	7
CACCTGTGTCACGACC	ref_2069_RC	27	42	49	35	31	39	53	38	32	19
CGAAATCCCCGCCTTT	ref_2069_RC	0	7	0	3	3	3	6	1	8	0
TGTAGTATCCCTTTGC	ref_2069_RC	0	0	0	0	0	0	0	0	0	0
CATAGCGCCGGTTTCC	ref_2069_RC	29	24	34	20	15	31	29	28	27	24
TGATTGTATTGTCGAT	ref_2069_RC	46	48	64	61	47	51	33	44	49	40
TGCGAGGGTCGTGTAC	ref_2069_RC	246	254	300	307	305	230	250	274	313	278
GGGTACTTAGGCCTAT	ref_2069_RC	40	13	27	32	13	19	19	20	22	19
CGGCCGATAGTTGTGC	ref_2069_RC	203	330	221	188	332	172	350	206	322	172
GGTGAATGTGCATTAA	ref_2069_RC	8	9	18	13	4	9	10	5	7	14
CTTGGACTTTTTTCTT	ref_2069_RC	19	6	16	14	16	17	14	12	12	10
GCTCCTGCTTCCGCTA	ref_2069_RC	121	124	107	98	98	108	103	94	136	96
GCATTAGCCTGATTTG	ref_2069_RC	60	45	60	58	51	49	29	40	47	48
TCGGTTCACCCGGTCT	ref_2069_RC	13	11	23	5	5	11	12	10	9	16
AATATTTATACGGGCT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GTCTATACAGACAAAT	alt_2047_upstream	31	18	32	31	31	17	31	21	24	31
ACCTTCCCTGCCTGAT	alt_2047_upstream	7	9	14	4	10	10	5	7	6	12
GCTTTTCCCGAATATT	alt_2047_upstream	111	85	127	126	100	104	79	72	98	72
CATGGAATTAATCGTA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAGTTGTATAATG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TATCTGGGGCTCCAGT	alt_2047_upstream	10	10	15	13	11	6	13	7	9	10
CTACGCTCGGGAATTC	alt_2047_upstream	193	161	202	192	153	175	148	201	149	144
ACTGACCAAAGGTTTC	alt_2047_upstream	4	7	3	7	0	4	4	0	2	6
TCAATATGAACACCGC	alt_2047_upstream	20	19	19	17	11	14	17	17	21	23
GTGGTTTTATTATTTG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TGGACCCCCCTGTATA	alt_2047_upstream	80	65	82	98	62	78	71	97	73	59
GCAGGAAGGCCAGTTG	alt_2047_upstream	30	15	20	30	8	26	11	17	22	21
CTTTAAATCTAATTGA	alt_2047_upstream	54	49	64	58	57	43	61	67	53	51
AGACGATGTGATCTAA	alt_2047_upstream	16	8	12	8	17	17	7	11	3	9
CATATCACGCGATCCT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CCGGATAAGTTGTTGT	alt_2047_upstream	50	41	75	45	38	40	36	44	56	50
CTGCTGTACCTCACCT	alt_2047_upstream	29	12	47	43	36	39	22	37	22	36
TGATCTCTTAGGAGTA	alt_2047_upstream	48	59	69	65	48	61	62	51	54	59
GGATTAACATTTCCCG	alt_2047_upstream	109	87	115	119	80	126	85	116	88	101
TTACTTCAGTGTATCT	alt_2047_upstream	21	12	18	17	12	16	14	18	15	11
GAGGTTTAACGTTTCG	alt_2047_upstream	18	28	28	22	14	18	17	16	12	15
GGCTCATACCCCTATA	alt_2047_upstream	15	10	23	8	3	15	9	12	18	12
GCGGCCGTTGATAGGG	alt_2047_upstream	11	25	12	14	22	12	12	15	14	13
TCATTTCCCTTCTGAA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGACTGGCTGAGT	alt_2047_upstream	16	12	29	10	21	10	11	10	11	25
TTCCTGGTGTAAGGTC	alt_2047_upstream	8	9	24	11	12	10	12	13	11	28
CTGTATTCGGGAATTA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCAATCAAAGATT	alt_2047_upstream	36	34	37	36	32	34	28	29	34	27
TTCACTGAAAAATGAA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGCACATCTAGTTCGT	alt_2047_upstream	23	17	41	31	28	33	25	25	31	34
CCTTACCATTTTTTTT	alt_2047_upstream	43	41	41	30	23	34	41	32	57	30
TCTTCCTCCGTTCAGT	alt_2047_upstream	5	9	14	10	16	8	10	12	8	12
TAGCCATCTTGCAGTT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTCTTCGTATGC	alt_2047_upstream	19	14	15	21	13	17	17	13	11	23
ACCCTGGTAGAATCTA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGGCTACGTTGAT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTGATCTGACGA	alt_2047_upstream	73	67	103	72	54	79	50	69	62	65
ACACACGCGCTAAAGA	alt_2047_upstream	2	1	1	1	2	0	4	1	1	7
ATGTATTCTTGCCTTC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCGGGGTGGGTCG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTACTCGTCATTTCAT	alt_2047_upstream	45	59	81	58	51	50	42	45	42	58
ATTCCCCTGGTTCGGG	alt_2047_upstream	118	120	157	114	110	123	132	110	106	106
CCCTAGTAAGTTGCAG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCTCATTTCTCACCCG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTGCCAGCACATT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGCATCGGCGCCG	alt_2047_upstream	10	14	19	12	11	13	8	7	12	8
ATATCTGGGGCAGCCC	alt_2047_upstream	2	3	6	5	4	7	4	4	4	5
GTCCTTAATACGTCCG	alt_2047_upstream	12	12	17	21	22	23	15	15	10	21
GGAAACCGCTTGTAAT	alt_2047_upstream	30	27	33	42	27	31	20	24	23	30
ACCCTGATAGCATTCT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGTGCTGTTAAG	alt_2047_upstream	3	1	1	2	0	2	1	0	1	1
TCGACGTCGCTTTTGT	alt_2047_upstream	3	7	7	1	5	6	7	3	4	3
TTTAGAGGACATAGTA	alt_2047_upstream	4	13	10	6	4	5	6	5	2	9
ATTCACTTGAATAGAG	alt_2047_upstream	7	14	14	11	11	22	18	7	9	13
TCGAGTCGGGTATTCT	alt_2047_upstream	10	5	14	6	14	12	7	10	2	7
CGCTTCTCGGCCCCCT	alt_2047_upstream	3	2	6	0	5	4	3	5	4	4
CTCTTCACTATCAGGT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TGAACCGTGATCATCT	alt_2047_upstream	238	186	275	231	172	205	193	216	235	189
GCGTTTTACCAGGCGT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATTGAAGATTCAGGGC	alt_2047_upstream	44	46	53	54	50	56	46	41	45	38
CTAACTTGGGTTCCCG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTAAAGTGGGCACGAT	alt_2047_upstream	69	58	109	91	70	75	80	85	89	66
CCAATGAATTAGTTCG	alt_2047_upstream	5	7	5	6	10	9	14	5	4	6
GTCCGGCTCTCAACAC	alt_2047_upstream	7	6	10	16	10	7	11	11	4	7
ATAGGTTGGTTCTGAT	alt_2047_upstream	93	46	104	80	57	72	78	67	68	83
ACGCGGGACCGTCTAT	alt_2047_upstream	142	134	211	202	134	141	153	141	156	137
CTACTTCGTTTTACTG	alt_2047_upstream	58	94	90	97	58	77	77	95	86	53
TGCCTACTCGGGTTTA	alt_2047_upstream	52	46	62	47	51	40	55	56	47	42
GCATTCGTTGATATGG	alt_2047_upstream	32	27	35	30	20	32	24	30	25	34
AGTATGTAGGCACAGG	alt_2047_upstream	13	17	11	16	11	17	4	14	15	7
TAACCACGTGAATAGC	alt_2047_upstream	16	12	12	10	15	16	17	20	16	12
TCGCTCACCTAAGTGG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
AAGTAATCTTGGTATG	alt_2047_upstream	4	3	6	3	1	3	7	1	3	1
GCTGGCTTCACTGTCG	alt_2047_upstream	13	17	25	30	29	22	28	20	27	17
CTAGAAGCCGTTGAAG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAGTCAATCAAAA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TATGAGTTTTATACAA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCGCATATCCAGCGCT	alt_2047_upstream	4	4	8	0	5	6	10	6	6	5
GGTGTAAATGAAGCTT	alt_2047_upstream	12	4	10	9	8	12	16	13	6	10
ACTGCTGTACCTCTGA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CCCCACGTCTACCGTC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCCTTCATAAAAG	alt_2047_upstream	4	8	10	11	14	9	6	4	7	6
GTTTAGTTGTACTTTG	alt_2047_upstream	97	88	121	84	90	86	108	95	100	74
GCTGCATCAAGATTTT	alt_2047_upstream	26	26	36	26	16	26	26	25	21	32
GGCATGAATTATGTTC	alt_2047_upstream	1	1	2	0	0	1	2	0	1	1
ATCTACTGCCTTGTAG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTAATGATGGTG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTGAGGGATAGCC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CTAGACACCGCTGGAC	alt_2047_upstream	2	10	3	6	2	3	6	5	2	1
TGGTGCTAATGGTCTT	alt_2047_upstream	16	16	22	19	4	22	13	16	20	8
GGTTTGCCTTAACGGA	alt_2047_upstream	21	28	32	29	18	30	18	18	16	22
GGGTGTTGCACGTGGC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCAATTCTATGTC	alt_2047_upstream	17	12	17	18	18	20	10	18	15	14
ACGTTCTCCCGCTTAA	alt_2047_upstream	127	122	177	120	141	124	146	117	156	106
TCGGTGCAGACATACC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCACCTAAAGTGA	alt_2047_upstream	8	6	10	6	5	10	4	12	1	7
TCAAAGAAACGGGCGT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCTTAATGTGCCG	alt_2047_upstream	13	7	11	12	8	19	19	9	11	15
TGGCAAAGGGATGCTG	alt_2047_upstream	20	11	17	19	15	18	9	13	17	13
TCTAGGGGTGTGCTCT	alt_2047_upstream	28	28	16	33	27	24	35	22	44	22
ACCAGGACAACGAGGA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
AATCCGGGTTGGTTCT	alt_2047_upstream	3	4	5	4	4	8	5	3	4	3
TAGTCCATAATGACGG	alt_2047_upstream	6	1	5	5	2	4	4	2	10	4
GAATCCGCCTTAAGGG	alt_2047_upstream	3	2	0	0	4	4	1	0	2	1
CGCCAACATACAGGGC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTGTTAATTGCT	alt_2047_upstream	61	40	75	64	43	42	25	30	45	63
TGCAACGTGTTCCGGG	alt_2047_upstream	17	14	14	15	6	15	22	13	14	12
CTAGTAAATTCTAGAG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GAACTAAACCTAACTA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTTATTACAAAATGGT	alt_2047_upstream	144	115	182	147	91	163	135	119	129	113
TAGTGTACCGCTCTTC	alt_2047_upstream	88	77	135	92	90	100	90	90	98	72
TACGATTTGCACAGTT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCGAACACCAATCCTA	alt_2047_upstream	47	19	29	33	25	23	32	34	24	19
GCAAGTTTCTTACCGG	alt_2047_upstream	8	7	9	10	12	9	12	2	4	11
TTCTGAAGTCGCCTAA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATATCATGCCGATGAG	alt_2047_upstream	26	41	45	39	26	36	35	31	33	39
AAGAGGTCATCAGTCC	alt_2047_upstream	15	18	33	24	10	17	19	15	8	7
GCCGTATGGCGAGATG	alt_2047_upstream	40	31	43	24	31	35	25	32	33	37
CTTTGGGGTTGATCGT	alt_2047_upstream	17	11	22	18	10	15	22	24	17	13
AAGTTGACGGTATTAT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CTATTTGAGCTGCAAC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCCCCAGTAGGCT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
AATTTGCTGCTCCTTC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGTGTCTCATTCG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCAGTAGCCGCAG	alt_2047_upstream	4	3	7	1	4	7	6	5	9	2
CGTACTACTTATGGTC	alt_2047_upstream	29	23	33	28	20	31	20	26	25	31
CTTAGATGATTGGACG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGGATACGTTCTATAA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCCTGCCTGAATT	alt_2047_upstream	26	11	21	20	13	21	18	24	15	14
TCGTCTTTCTTCTAGA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TAACGTGCTGTAATAC	alt_2047_upstream	22	19	33	38	26	29	25	33	20	20
TTATAGTTTTGTGGGG	alt_2047_upstream	33	30	59	44	33	40	31	49	34	31
CTGTCGCGATTCCACT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTCATATGAAAA	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGGGTTCTGTTCC	alt_2047_upstream	123	112	164	129	94	109	114	134	104	115
GATATGTCAATACAAG	alt_2047_upstream	25	19	32	32	19	26	30	30	23	31
AGGAACGAACATGTAA	alt_2047_upstream	13	13	21	20	17	15	15	17	20	21
ATCCGAAATTTGCAAG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCTTATAATGAAA	alt_2047_upstream	123	84	114	116	99	84	70	91	87	96
AGGCTGCGAACTGTAT	alt_2047_upstream	13	14	23	28	11	17	19	25	21	14
TGTTTCATACCGTCAA	alt_2047_upstream	103	71	109	89	64	90	91	90	67	99
TGCAGGTTATCAATTC	alt_2047_upstream	19	7	17	14	1	4	10	16	7	12
AATGCATACTAAGTAT	alt_2047_upstream	23	38	35	34	21	31	23	30	21	34
CAGTACCATGTGCAAT	alt_2047_upstream	57	46	69	57	47	46	48	43	40	43
TCCCAGCCCGGAACCG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGTGTGCTGGAATTTG	alt_2047_upstream	7	5	8	3	4	6	1	5	5	7
CATCCCGTGCGTTTAT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTGATGTCTAACTTAA	alt_2047_upstream	51	46	48	61	43	42	46	64	36	50
CCGCGAGTTAATCGGT	alt_2047_upstream	5	5	2	2	3	6	8	3	8	3
AGTACAGGTTTACGTG	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGAAAAATATTA	alt_2047_upstream	99	44	93	83	64	71	65	67	74	72
AGGGGAAAAAATATTG	alt_2047_upstream	52	47	60	53	43	32	37	43	42	41
TGGTATGGTTGGCATG	alt_2047_upstream	1	1	2	2	2	5	2	3	2	1
CTAGGACTACTTCATA	alt_2047_upstream	42	47	45	33	47	41	47	35	47	28
AGACGTCTGTGGTGTA	alt_2047_upstream	16	16	28	26	24	17	24	20	25	19
GCCACCATTTTGCGTA	alt_2047_upstream	30	24	41	31	18	27	20	33	16	24
CGTTAGTTGTGTACCC	alt_2047_upstream	23	14	29	19	17	20	21	23	22	25
CCTCCCGTGCGTTTAT	alt_2047_upstream	50	37	63	37	33	40	46	43	34	38
AACTCAATTCGCTAGG	alt_2047_upstream	45	32	47	41	37	48	36	41	39	35
AGAGTGTTAGACGCCC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGAAATTTACCCGCAC	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
TGTCACTCCAGGTTCA	alt_2047_upstream	13	15	27	15	18	10	23	12	27	11
TACTACCGCACTATTG	alt_2047_upstream	50	34	56	46	55	46	43	49	52	38
GTTTCATTACCCTTAC	alt_2047_upstream	16	22	10	20	8	12	18	14	17	5
AACTTAGATGTATGGT	alt_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTGGTTAACCTCG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TGTTTGTATCGCTGCA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GGACCCTCGTCCTTCC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TGGGGGGATCTGGATA	alt_5810_new	12	20	32	21	24	16	21	17	14	19
GCGTCACCGCCTCGCT	alt_5810_new	29	25	29	32	20	26	41	32	27	24
GGCTCGCCCATTATCT	alt_5810_new	289	293	363	330	284	265	282	274	338	247
TAAGGGGGGGGACTTC	alt_5810_new	38	32	49	42	47	35	41	23	52	49
GCCGGGGGCTCGAGCT	alt_5810_new	11	15	21	18	16	7	21	19	18	8
ATCCATTAGGACAATT	alt_5810_new	21	25	29	24	33	12	31	19	23	19
AATTCCGCACTTTATT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CAGACCAGCTCTCGCC	alt_5810_new	30	22	14	24	15	12	20	23	14	13
CTCTTTATACGTCAGT	alt_5810_new	1	4	1	0	2	0	2	0	3	0
ATCCTATTCCGGCTTT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ACGATATCTAATTGAG	alt_5810_new	24	12	23	10	18	16	15	16	15	17
GAGCTCCTGTACCCGT	alt_5810_new	23	27	29	19	23	9	23	20	24	10
GTTTGAAGGTAGCCCA	alt_5810_new	72	104	108	90	92	73	120	76	113	78
ACCCACTCATTGCATC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GCAGTGCTTATCTCCC	alt_5810_new	4	7	17	8	17	9	5	12	7	4
GGTTTCACAACATGTT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CATCGTCATGCTCATT	alt_5810_new	43	31	48	45	46	44	50	46	51	40
CTTTACGACATTCGTT	alt_5810_new	52	39	54	45	45	34	38	46	47	28
CGATACAAGTATCGCC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CCAAACTCGCTGGGAG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TTAATCATGTTACCGT	alt_5810_new	4	4	1	2	3	4	1	2	0	2
TCGAGCTAGTGGCTAA	alt_5810_new	21	17	17	14	24	19	14	13	22	14
TTATTTTTTAGCACCA	alt_5810_new	7	15	16	18	20	14	15	12	16	13
ATCGGCCTATGTCGTT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ATCTGTTACACATAGG	alt_5810_new	13	19	17	16	15	23	16	20	22	20
TTTAAACAGTTACTAT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CTCACCGTTTCTATCT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GTGTTGATTCGCTTTT	alt_5810_new	13	9	11	11	7	9	12	4	12	9
ATCTGCCTGCATCTAT	alt_5810_new	89	79	100	102	77	91	82	59	97	71
CTGTCGCCTTCAAACG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GCGCTCCACGGAACGT	alt_5810_new	13	12	10	15	12	7	11	6	19	3
GGCTCTCTTGTGACAT	alt_5810_new	16	14	13	15	20	25	26	16	23	17
TCCTTGGTTGTTTTTG	alt_5810_new	97	117	112	103	101	128	138	126	125	118
CTGTTTGGTTCGTGCT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TAAGATGCCACAGTTG	alt_5810_new	64	53	68	60	54	56	58	76	72	60
GATTTGGTCTGTTTCT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GGCGTCAATTTTCTCT	alt_5810_new	109	121	142	121	108	115	103	120	115	110
TAATTGCCGCATTCAG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CTTGTAGTCACGTAGT	alt_5810_new	4	9	9	3	8	9	6	14	12	6
GTTGGGTTAGTCATAA	alt_5810_new	129	152	144	119	126	120	168	118	143	109
GATCCATGGATGCATG	alt_5810_new	123	122	150	152	136	101	134	93	135	110
TCAACACACTTGAAAT	alt_5810_new	13	14	12	9	14	11	19	11	27	8
TGGCACTACTCTGAAC	alt_5810_new	27	33	27	39	34	31	21	19	24	27
TATTGCCAACAGTACG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GGGGGAATGGGTCGAC	alt_5810_new	16	11	19	20	20	18	13	16	17	16
ACCGGTGAGAGTCTTA	alt_5810_new	39	37	33	27	29	31	40	30	35	23
TTTAGAGATTTTTGCT	alt_5810_new	8	8	9	8	10	9	8	7	11	13
CCGCCTATGGCAAATA	alt_5810_new	2	14	13	5	17	3	6	5	9	9
AGCCATCAGCTTCGTC	alt_5810_new	59	79	95	60	88	66	70	75	87	64
CTCTGATGCGGGCATC	alt_5810_new	501	462	612	539	519	443	535	486	555	427
TACCCGTGTTAGCCGG	alt_5810_new	21	21	28	29	21	16	28	15	21	10
TTAATCGGTCTTTCAT	alt_5810_new	48	32	54	66	37	44	41	37	30	30
AGTGTCTAGAACAGTT	alt_5839_new	0	0	0	0	0	0	0	0	0	0
TACTTTGCTCGGGACC	alt_5810_new	34	45	46	47	63	49	54	40	57	28
CGCACGTAATCTGGAA	alt_5810_new	45	42	66	42	43	37	42	42	50	36
CTGCGTGTTCTATCGG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ACAGGGAGTCCTCAGC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CATCATCCTTTTTCTT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ATGCCAGTAGTTTTAG	alt_5810_new	15	21	13	17	20	16	15	17	20	14
GTCCATATAATCACGG	alt_5810_new	5	13	6	7	4	3	6	2	7	13
ATGGTATTTTTCTTAC	alt_5810_new	105	147	164	136	165	122	122	133	168	118
ACCTTCGATCTTCGGG	alt_5810_new	45	55	48	43	29	50	42	41	38	27
AATATCACCTGCCTCG	ref_5810_new	76	91	83	74	96	72	97	78	93	64
AGCTTTTAGGTCTTTA	alt_5810_new	0	5	3	2	6	2	4	2	4	3
GGCTATTCTATTAACA	alt_5810_new	38	27	33	27	27	38	48	37	41	38
GTGAAGGCTGGTTAGG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CATCAGCCGTCGCTTC	alt_5810_new	17	32	27	20	32	16	37	16	26	13
GTGGGGGTCTTCTAGA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CCTCGGACTCCTCATG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GATGCTGCCTCTATGT	alt_5810_new	24	30	52	42	24	22	41	34	40	38
AGTAGGAATTCGGAGA	alt_5810_new	34	28	36	55	49	28	42	31	39	34
GTAACAGCGCCTCTTG	alt_5810_new	53	69	88	72	79	71	87	62	98	60
TGGTAACAAACATGTG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TAGTCCCTGATTGTTA	alt_5810_new	33	30	33	24	35	31	34	25	44	24
GGCGAGTTTTACTTTT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ACCGGGGGGCATAGTA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TTTAGTTGGCGGTACC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GTAAGGATTTCAGGGC	alt_5810_new	164	155	197	151	170	187	156	136	173	162
AGCTATTCGGTCATGA	alt_5810_new	50	38	43	42	33	28	42	31	42	31
TTTAAGCTTACCGTTG	alt_5810_new	7	20	14	12	20	13	16	11	25	11
GTGCTTTGTAGACATC	alt_5810_new	46	43	45	43	34	44	49	48	43	32
CTCGATTTTCCAGCGC	alt_5810_new	34	32	39	30	37	29	33	42	52	26
CCGTAGTTGCCCTCAG	alt_5810_new	2	8	6	4	2	1	3	2	4	1
GAACTGTCGGCAAGAG	alt_5810_new	5	6	4	4	4	5	3	8	5	9
AACCATAACACGGGAG	alt_5810_new	28	15	30	17	32	21	18	19	21	24
ACCGTTCACATCTTGT	alt_5810_new	7	8	11	5	9	4	10	12	6	2
CAAACGAGTACTGATA	alt_5810_new	9	11	5	5	4	6	7	6	10	0
GCGCTCATTTTATTGG	alt_5810_new	36	22	46	32	37	41	35	37	40	25
GGCTCTGCGAATGCGC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
AATTCTGCACTCAATG	alt_5810_new	110	91	129	110	111	95	109	120	124	106
CTACCTGCGTTACAGT	alt_5810_new	23	19	31	42	44	40	50	37	49	34
CGGGTGGTAGGATTAA	alt_5810_new	14	10	18	10	15	13	6	11	8	16
TTTTTATCTAACTCCT	alt_5810_new	40	55	58	44	38	51	64	42	82	24
TATGCGCTTTGAAGAA	alt_5810_new	95	108	108	99	114	86	106	91	108	90
GTGTTAAACTCATGCC	alt_5810_new	15	13	15	14	14	8	5	11	10	11
TAGCCATTCATTGTAA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GAGGAGTTGAGGATTA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
AGCAGGTAATAATCTG	alt_5810_new	8	15	11	10	11	7	10	17	24	10
ATTTTCTTGTCAATTG	alt_5810_new	39	49	63	44	52	35	62	46	59	45
TCCACGCGAGCGTATT	alt_5810_new	15	8	10	17	13	13	20	18	16	15
GGTTATATACCGGGGC	alt_5810_new	130	142	163	128	138	137	151	128	136	127
GTAAAAATGACGTAGC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GCGTCGATAAGGCATA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GTTACTTGTGTGGAAC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GGTAACGGGATGGATG	alt_5810_new	101	88	103	106	86	75	86	86	91	82
GAGCTGGCTTCACTGT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GCACCGTTGATTTATC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GCGTCACTTAATGGGC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GGGTTGAATGAGTTCT	alt_5810_new	3	0	2	1	1	1	3	1	0	0
AGTCCTGCTCCCGTAA	alt_5810_new	166	209	176	152	176	156	203	142	219	143
CTTCCTACTCATCCTT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GATCTTTAAATTCCTA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ACTCAATTTCCGCGAG	alt_5810_new	115	144	128	118	130	106	111	114	125	109
ACACAATTTCCGCGAG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GTTGACGTAGCTCCAA	alt_5810_new	35	39	33	45	33	30	34	35	41	33
CTTGTCTGTATACTCC	alt_5810_new	29	49	43	32	35	29	48	24	47	28
AGCAGTCGTTGCGGTT	alt_5810_new	38	41	55	45	50	52	43	26	41	25
GTTTTGGCGCTATTAT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
AAGTCGATCGCCTTTT	alt_5810_new	15	6	17	7	14	18	11	7	10	11
GTATGAAGGTAGCCCA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CTATCTCGCGATAAAT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GACCGTTAACGGTTGA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ACTATCTAGCCTGGGA	alt_5810_new	26	37	34	30	28	21	36	29	35	20
GATTTCTCAGCGCGAT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CTACTTAAAGGTGCCG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CTGTGTAAGGAACTCG	alt_5810_new	33	32	37	34	35	40	36	33	34	17
CTGTAATGGCGCACTT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TTTGAGTAATTCTACA	alt_5810_new	25	31	22	32	31	21	31	23	34	22
TACCTAACCTTATCCA	alt_5810_new	66	93	73	60	94	56	88	84	96	56
GGAGGGCCAAGTGCTT	alt_5810_new	37	54	45	40	64	48	63	42	43	44
AACTTCAGGCAATTCA	alt_5810_new	48	41	44	47	47	36	37	43	43	44
CTACTGAAACGCGCCA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TATGGTGGTGGTCCGG	alt_5810_new	23	20	28	24	14	25	21	19	26	15
CTTGTAGTTTTTTGAT	alt_5810_new	26	15	23	39	25	31	28	27	19	24
AGGTCAGGTATTTTTG	alt_5810_new	6	6	3	3	2	3	8	6	5	1
TCTCTAGCCTCTCATT	alt_5810_new	200	226	247	204	238	187	231	185	257	172
AAGGGCACTTCTAGAA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CTTACAGTTGTGGTCC	alt_5810_new	78	70	77	56	84	55	82	68	77	48
TCTATAAGTTGTCAGT	alt_5810_new	28	39	35	36	31	36	40	43	48	31
TTCAATCACGCTCGGG	alt_5810_new	3	3	10	4	5	2	3	6	6	2
ACATGAATACCCCGTA	alt_5810_new	2	6	13	7	10	5	7	7	8	8
ACTGTCACATTGATTG	alt_5810_new	19	24	27	18	21	23	12	25	33	22
TGCATACGAGTAGCTA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TCGTTATATAGCGTTT	alt_5810_new	0	0	0	0	1	0	0	0	0	0
TTGGGGTGGGAAGTTT	alt_5810_new	6	6	10	4	7	8	6	3	5	7
TTGGCATATTATGCGA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TAATCAATATTTCATC	alt_5810_new	33	35	44	51	34	42	38	35	43	36
AAGGTCAGTCTCTTGA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
CTTTGGGTGTCGTACA	alt_5810_new	84	76	75	87	79	79	86	62	81	71
CACATATATTGGCCAA	alt_5810_new	64	106	77	47	92	57	122	73	107	59
TGAGCACGCTTTTCAG	alt_5810_new	6	3	4	9	3	5	6	4	6	7
TCTTGCACGCATAGGC	alt_5810_new	42	42	44	46	36	32	41	35	38	28
TATCGGGTCAAGGGCC	alt_5810_new	14	10	23	16	18	11	9	21	10	10
CATACGCTCTCCGATA	alt_5810_new	84	145	82	90	115	54	141	67	127	58
GTTCTGTACTTGTAGT	alt_5810_new	12	9	17	10	18	11	15	9	16	10
CTCCCGGGATTTTCCT	alt_5810_new	0	0	0	0	0	0	0	0	0	0
AGTGATTTATGAAACG	alt_5810_new	0	0	0	0	0	0	0	0	0	0
GAGAAATCATAAGCGT	alt_5810_new	0	1	4	4	4	4	0	2	1	1
GTCCAGAAGGCTTATG	alt_5810_new	5	3	3	1	5	1	2	6	4	1
AAGGGCTCGGGCTAGT	alt_5810_new	41	34	46	52	23	31	42	24	65	34
ACGCAATCTAATTTGT	alt_5810_new	51	62	58	42	54	59	70	49	78	46
AGTATGTTTTTGCTCG	alt_5810_new	34	47	55	39	33	29	46	40	50	35
GCTTCTTTTTGGCTCT	alt_5810_new	13	11	10	8	6	6	5	2	8	9
CATCGCGGCTTCGGTA	alt_5810_new	171	193	215	181	194	153	187	171	203	145
TTCGGACGGCCCCCTA	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TCTTTTGTGAACTCTC	alt_5810_new	15	10	11	10	9	11	16	6	16	7
TCAAAGGCCGGCCATG	alt_5810_new	34	30	34	48	31	35	20	25	35	23
GTAAAATATCTCTGGG	alt_5810_new	55	75	82	45	72	71	93	54	87	65
TTTCAGTTGGTTTGTC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
ACTTGACGAACGGAGC	alt_5810_new	0	0	0	0	0	0	0	0	0	0
TGAGGCCCGGCAGGTT	alt_5810_new	58	56	74	51	54	60	65	58	74	54
GCTAGTGAAGCCGATT	alt_5810_new	4	9	2	3	10	6	6	6	5	2
TTGTGCAAAGTTATTC	alt_5240_RC	10	8	16	11	18	9	13	10	10	12
AGAAAGACCACGACTT	alt_5240_RC	95	85	112	102	77	91	100	89	89	80
CGGCCAGTTTACATTT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
ATCAAGTCCTTGCCAT	alt_5240_RC	17	24	23	18	14	18	15	10	10	15
CCCCCTTCTCTCCCCG	alt_5240_RC	13	17	15	18	21	14	9	15	13	12
GTACCACGTTTGTCGC	alt_5240_RC	15	23	21	17	17	16	10	12	22	15
CTCCACGCGATTCGGT	alt_5240_RC	128	141	182	182	126	154	129	127	116	118
CCGTGTGGCATACGCT	alt_5240_RC	11	29	13	21	44	11	29	13	34	14
CGTGACTACGTTGCTT	alt_5240_RC	36	49	51	32	38	39	32	36	34	32
CCGGCATCCCAAAGGA	alt_5240_RC	58	90	69	66	62	54	72	79	79	60
GGGTGAAATCGGGTTC	alt_5240_RC	10	17	14	12	8	12	8	11	5	15
TTCTCGCCTTCATGTC	alt_5240_RC	22	18	27	21	15	23	4	18	20	22
GTTTTTACGTTAGTGA	alt_5240_RC	11	8	8	8	5	11	8	7	14	8
TCGAGATACTTCTGGT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TTCTGATAGGACATTA	alt_5240_RC	27	27	39	38	24	29	33	28	22	43
GGACGGGGCTAAGAGA	alt_5240_RC	14	5	3	14	9	1	8	6	3	7
ACGCCTGTTCCGCTTT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GCTCTCCTAGAGGTAT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TACTGTGTCTAAGTTC	alt_5240_RC	6	2	6	4	6	3	3	5	4	3
TTTAGCTTTCTTTCGA	alt_5240_RC	9	2	6	8	4	6	5	5	6	3
AAAGTAATTAGCTTCG	alt_5240_RC	43	40	34	31	14	30	29	22	23	24
AAGAAGCAGCCTGTTC	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GTGTCTATGGCCGCAG	alt_5240_RC	11	10	15	7	6	6	4	13	7	4
AGGGCATTAACGTGTC	alt_5240_RC	7	7	10	9	6	6	8	8	6	8
TCTGATTACTTATTAT	alt_5240_RC	64	42	79	80	76	48	57	62	62	59
TTTATCAAGAGTCGGT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GCTCATTTGTACCGCA	alt_5240_RC	66	54	54	57	49	48	65	34	62	63
CATCCTCCCTCATCAC	alt_5240_RC	67	74	80	70	68	61	70	66	90	56
TAGCCGGGAGAACCAG	alt_5240_RC	72	63	90	75	68	87	68	70	53	68
ACTGAGTGTCACGAGA	alt_5240_RC	8	5	15	13	12	11	4	12	13	11
TCAAAAATATGTTGTG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GTCTAATCATTTCGAG	alt_5240_RC	11	10	15	25	17	16	15	13	6	11
TCATCAACCTCCCCGG	alt_5240_RC	11	36	12	14	34	10	39	11	31	13
TGGTATGGTAGGTTGC	alt_5240_RC	51	30	56	52	33	44	27	31	36	39
GTTGAAATAAGTCGAC	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GTCCCAAAAGCTGGGA	alt_5240_RC	54	37	64	67	45	51	39	66	44	45
CCGCCTCAGGACACAT	alt_5240_RC	36	35	47	39	43	39	45	33	40	33
TTTTATACTAATAATG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GTCGCCGCTCCGACAG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
AATCTGTTTCTTGTGG	alt_5240_RC	26	33	26	24	19	24	26	27	24	16
TTTAGTAGCCGTCTTT	alt_5240_RC	31	29	39	23	41	29	28	22	27	25
CTTGGCGCTGCGCTTG	alt_5240_RC	22	25	36	23	16	30	25	11	31	22
GTAGCGCGTAAACTTT	alt_5240_RC	7	14	24	15	14	7	13	10	9	14
AATATGTTGGGCTCCC	alt_5240_RC	6	12	12	11	3	8	10	4	11	8
GGATTCGTTTTTCTCA	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CGGCATAAAGATATTC	alt_5240_RC	18	25	25	23	20	20	19	15	31	16
AGATAGCCAGATTACT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
ATGTTAAGGAGCAAGT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TAAAAACATTAACCGG	alt_5240_RC	49	55	57	62	41	46	50	47	59	50
CTCTATACGGGTCAAC	alt_5240_RC	27	21	32	32	36	43	29	28	35	31
ACAATTTGCGTAGGGC	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
AAGGGAGACCCTGCAG	alt_5240_RC	14	6	11	8	6	8	7	6	8	10
CACACTAATGGGATCT	alt_5240_RC	77	42	95	75	64	60	52	99	48	50
CTCCGTAGCCATCTGG	alt_5240_RC	38	33	41	33	36	34	21	30	39	29
ATCTAGTTTTGTAGTT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GGATCTTCATTCTGGT	alt_5240_RC	17	11	35	22	18	24	25	20	21	23
TTCTAGTTTTGTAGTT	alt_5240_RC	164	155	172	142	165	118	182	94	151	116
CATAGTATGTGTTTAA	alt_5240_RC	177	165	200	189	176	155	195	161	180	128
TCGCCCCTCATAGTGC	alt_5240_RC	19	30	35	28	20	28	19	25	30	20
CTTTTATCAAATATCA	alt_5240_RC	389	356	458	417	315	373	386	321	316	377
CAGTCTGGTTCGTGGA	alt_5240_RC	13	8	9	10	16	13	7	6	10	14
GGTGGGCCTTGGCCGG	alt_5240_RC	33	20	32	17	21	27	33	23	25	23
CGGTTCCTATAGCCTG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TAACTCCGCTCGAAGC	alt_5240_RC	60	41	58	34	42	41	49	51	42	34
GTGGTTAATCATCTAA	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GGCAAAACGCATCTGG	alt_5240_RC	29	29	41	20	37	31	39	25	35	30
ATAATAGCTTTGTAAG	alt_5240_RC	119	103	122	89	89	104	99	93	110	83
GGTTAGTGCGAAGTTA	alt_5240_RC	16	12	23	20	17	16	18	17	15	13
CATTCAAGGACTAATA	alt_5240_RC	33	30	36	25	23	31	22	20	22	28
ACTTGTGCGGGTACTT	alt_5240_RC	19	12	11	16	19	10	21	14	14	16
CCCCGTAAACTCGCGA	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
AGCTGGTATGCTTTAG	alt_5240_RC	28	43	63	53	50	40	36	40	35	37
TACATTTATCTACTGT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTTCGTTAGGCA	alt_5240_RC	67	60	70	74	61	61	71	67	63	46
AGCTAGACACCTTTTT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TGCTATGTGAGCGTAA	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CAGAGTCCTAATTGAC	alt_5240_RC	56	59	59	63	63	69	57	62	66	54
GACTGACGAATGGGTG	alt_5240_RC	2	6	4	8	5	3	6	3	9	7
TGGAAAAAATCCAACA	alt_5240_RC	6	10	10	5	7	4	6	6	5	9
AGTCTTACCTAGACAA	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TACACTAATCTTCCTG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TATTCCGGATTGCTAG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TGGGGAAGAGTCTTTG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CTTTTTCTCGGCCTGG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
ATTGTCGTTTATCCGG	alt_5240_RC	34	23	49	35	20	26	17	31	30	22
TGTGGTTTTAGCTTAC	alt_5240_RC	81	67	87	71	72	58	68	74	76	73
AGTTGGTAATTTCGTG	alt_5240_RC	14	10	10	8	6	5	8	9	12	10
CCCTCGGCCGGACAGC	alt_5240_RC	21	13	22	14	16	13	13	14	9	11
CGCTTTTAGGAAATTC	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CGAATATGCTGGGAGC	alt_5240_RC	24	35	32	37	25	24	17	27	25	24
TCGGTCGAATTTGCAT	alt_5240_RC	36	73	30	35	58	36	64	28	86	25
AGCATATATTCTATTG	alt_5240_RC	7	5	3	7	4	4	6	7	4	4
GGGCATTCGTCCCTGT	alt_5240_RC	28	17	24	19	8	19	11	17	22	14
TATAAGGAGTTATTCC	alt_5240_RC	9	3	11	9	6	10	6	7	8	12
TAAGATAACAGATCTC	alt_5240_RC	12	11	17	13	7	10	13	8	12	12
CGACCAGGGCACACTC	alt_5240_RC	5	2	6	7	5	2	8	9	1	5
TTTCAGTTTTCGCTCT	alt_5240_RC	4	6	7	4	1	6	1	1	3	2
TCGCGTCTGCTGACAT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
AATTCCCTGAGCACTT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
AATGAGCATTTAGGAA	alt_5240_RC	142	121	197	163	143	151	115	131	140	127
AGCCGCTTTCGGTGTC	alt_5240_RC	6	6	11	3	13	5	11	5	7	3
TTAAATCAACCCAATT	alt_5240_RC	0	0	1	1	1	4	0	1	0	0
TTTTTGAGTCTGAGCA	alt_5240_RC	6	6	13	6	5	13	9	9	11	9
GGCCATTTTGATGCAT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TGGGGTTTTTTAATTT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GTACATGTGTCTGAAT	alt_5240_RC	18	19	37	22	9	14	12	20	22	18
CCGTTTCTATCTGGCG	alt_5240_RC	71	72	104	98	65	62	59	68	65	66
TCCGAAATTACTGTTA	alt_5240_RC	102	71	91	69	50	82	71	67	69	65
AGCTCGACACCTTTTT	alt_5240_RC	96	93	117	97	119	81	122	60	98	70
TTCCTGTGTAATGAGC	alt_5240_RC	4	3	7	12	8	3	3	8	5	4
CCGTCTGTGCTGCGAC	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
TAGCAACTACAATCAC	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CCCTTCAGGTGGTAAT	alt_5240_RC	25	20	27	20	17	16	12	15	28	18
TAATCCTCGGTTGCAT	alt_5240_RC	33	23	37	42	22	34	23	31	23	40
GCAATTTGTCCACACG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CGAGGAGTGGAACTGA	alt_5240_RC	20	13	17	26	14	8	11	15	18	12
AGTGCCCCTCTTCACC	alt_5240_RC	22	18	34	28	25	12	23	20	18	15
GCGGTCTCCGTCTAGA	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CCCCAGAAGTAAGGTG	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
CGTAACTACGTTGCTT	alt_5240_RC	0	0	0	0	0	0	0	0	0	0
GGTATCAACCGATCGC	alt_5240_RC	81	65	133	95	78	82	100	112	65	81
ACCATGATTGTGCATC	alt_5240_RC	29	27	32	38	26	22	37	22	30	24
TTTCTCGTCAAGGCTT	ref_2871_missing	13	14	15	4	15	10	16	9	7	13
CTTAAGGCCCTCCCTC	ref_2871_missing	0	1	1	0	0	0	0	0	0	0
GCTATAGTGCCCTCTT	ref_2871_missing	1	1	1	0	0	2	2	1	2	1
CTCACACGTCCGGGGT	ref_2871_missing	1	1	0	0	0	0	1	0	0	0
GACATTGCAATTACAG	ref_2871_missing	1	0	2	1	0	0	0	2	2	0
CCTGGTCTCTCTTAAT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
CGATGTCCTGACGCGA	ref_2871_missing	10	6	15	11	6	5	2	6	9	9
TGAGGTCAGGTGCGTT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TAAGCCGCAGGCTGTT	ref_2871_missing	1	0	0	0	2	0	1	2	1	1
GCTTGCATCCCTGCAT	ref_2871_missing	0	0	0	0	0	0	0	1	1	0
GCTAAGCAATGTCAGG	ref_2871_missing	3	4	4	2	2	3	1	4	5	3
CTTATTTTAATACCGT	ref_2871_missing	0	2	7	1	4	2	2	5	3	3
TGAAGCCAGTTGTGGT	alt_2871_missing	0	7	2	3	3	2	5	2	3	1
GTACCCGTATCCAGGG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TCTAAAATCTTATAAA	ref_2871_missing	1	0	0	4	0	5	0	1	0	0
CTAGGTGTTATCAGGC	ref_2871_missing	0	2	0	1	0	0	0	0	0	1
ACCCCGGGCCGACCTG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
CCAGGTTGCAACGTAT	ref_2871_missing	1	7	2	1	3	2	6	1	5	1
ACTGCTTACTGACCCG	ref_2871_missing	3	2	0	0	0	0	1	0	3	0
CGGCTTGCTGTGGAGT	ref_2871_missing	0	0	0	0	0	0	1	0	2	0
TTGCCGGCAGATCCTA	ref_2871_missing	0	0	0	1	1	2	1	1	2	0
CTTCCCCCGCGGACTG	ref_2871_missing	0	1	1	1	2	0	1	0	4	0
CGTTGCATACATACCT	ref_2871_missing	0	0	0	0	1	0	0	0	0	0
GCCCTAGAACGAAACT	ref_2871_missing	0	3	1	0	2	1	1	5	4	0
GAGTGGTATTGGGCAG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TCCAGGGCTGTAACGT	ref_2871_missing	0	2	5	2	0	1	0	2	1	0
AGTTAACCCACGTGTC	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
CTCTTGTATGATTCAG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TCTAAACTCCCCACCG	ref_2871_missing	0	0	0	0	1	1	1	0	1	0
GTATAACTTCTTTAGT	ref_2871_missing	1	3	1	0	0	1	2	3	1	1
ATTTCATCTAGCCAAG	ref_2871_missing	6	4	10	5	6	1	5	2	3	2
TCGGCCGCCGTAGCCA	ref_2871_missing	1	0	0	0	2	0	2	1	3	1
ATCTGGCAAGCAGTTT	ref_2871_missing	1	1	1	0	0	0	0	1	0	0
TACTTTTATGTGTGGC	ref_2871_missing	0	1	1	0	1	1	0	1	0	0
TTTAGGTAAATCCGTC	ref_2871_missing	0	0	1	0	1	2	0	0	0	1
ATAAACCCAGCTTCCT	ref_2871_missing	0	0	0	0	1	1	0	0	0	0
ATCTACGCTTATCCTT	ref_2871_missing	1	4	0	0	6	0	1	1	2	2
ACCCTGGTTTTAATAT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TTCGAACTCTCTTTGG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
AAGTTGTATATACAGT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
ACACTGCCCCGGCTAG	ref_2871_missing	0	0	0	1	2	0	0	0	0	0
ATTAGCGAAACCGTAT	ref_2871_missing	2	4	3	2	2	3	5	1	3	1
CGATAGTTTTGGGCAA	ref_2871_missing	5	3	0	1	4	2	3	2	3	2
TCTTTCAGTACTGCTC	ref_2871_missing	2	1	0	1	2	0	1	3	0	1
ATTGCGGGAGTCCAAT	ref_2871_missing	1	2	0	0	1	0	0	0	1	0
ATCTTAGTGTATGAAT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
AGTTAGGGACATGGGA	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TATAGTGCCTATATCA	ref_2871_missing	2	0	3	0	1	0	0	0	0	0
GCCCATATCCCTTTAT	ref_2871_missing	2	4	3	1	1	0	6	3	0	1
TAAGGGAATCCGTGGC	ref_2871_missing	1	1	2	2	0	2	2	1	0	0
AGTCCTGGTCGAATTC	ref_2871_missing	1	3	0	2	1	0	1	2	4	0
TTACTCTTGAAGTTTT	ref_2871_missing	1	1	0	0	0	0	3	1	1	1
GGGGACTCGGCCGCCT	ref_2871_missing	4	4	3	1	5	1	3	2	1	3
ATGTTTGTATGGCCGG	ref_2871_missing	0	0	9	2	0	2	3	0	1	0
GTTTCTCAAATCTTAA	ref_2871_missing	0	0	0	0	0	1	0	0	0	0
TGTAATCTAGACTTAG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
ACCTATACTGGTCAGT	ref_2871_missing	3	1	6	5	2	6	4	1	3	1
TCGTGAGCGCGGTCGC	ref_2871_missing	2	1	3	1	1	2	2	2	0	4
TGGGAAATTGCACATT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
GATCAGACTGGTAATC	ref_2871_missing	0	2	0	3	1	0	0	0	0	1
CGTGGCGTTTTTTATA	ref_2871_missing	0	1	4	3	1	1	0	1	1	2
TTCGGATGTATTAGGG	ref_2871_missing	0	6	4	2	2	2	3	0	3	1
TTCGCCGCTTTTGGTC	ref_2871_missing	2	0	1	4	2	0	0	0	1	1
TAGTTGAAATTCCTTG	alt_2871_missing	0	2	3	1	0	3	2	1	2	2
TCGTTATAGAGTGTAG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TCATTCTACTGTTTAA	ref_2871_missing	4	7	7	3	16	6	12	2	6	3
TATTACGATCAGGCGT	ref_2871_missing	0	0	2	0	1	2	1	0	3	1
TATGTATCTTTGTATC	ref_2871_missing	3	5	1	3	1	2	4	3	3	1
ACCGAAGTCTTATGTA	ref_2871_missing	3	2	2	0	1	1	1	2	0	0
CTGTCCAACTATCATA	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
AGGACGCAGTACCTGT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
GGCCTCGACTTACCCT	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
TTCACGGTAGATCTTT	ref_2871_missing	2	4	2	0	1	1	0	1	4	2
GTCTGACTTAATAGTG	ref_2871_missing	0	0	0	0	0	0	0	0	1	0
ACAGTTTCGACTAAGC	ref_2871_missing	0	1	0	0	0	0	0	0	0	0
GTTATTAACTTGAGTA	ref_2871_missing	9	12	7	8	17	5	13	4	12	4
AGGTTCGACGTCTTCG	ref_2871_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCACTCTAGTGA	ref_2871_missing	2	2	1	6	1	3	2	0	4	4
ATTCTGATCTGTCTAT	ref_2871_missing	1	2	0	1	0	0	2	0	0	1
TACTCGGCCGGGTCGA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CAAAAACGCTCTATTA	alt_5851_new	21	25	20	12	28	9	21	10	16	17
CAGACAGTCACCAACC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TTAGGGCTTATTTCCC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CTCTTCTGGCTGTTAT	alt_5851_new	35	48	45	43	24	37	41	29	37	33
AAATCGCATTTCTATA	alt_5851_new	88	98	100	72	106	68	101	93	123	85
GTGATCCGTCCTCAGC	alt_5851_new	24	24	24	19	28	21	26	20	22	19
CTGTTTCTTGCCTTTC	alt_5851_new	12	17	25	21	20	18	18	14	18	12
TATGTCTGCCTTTTAA	alt_5851_new	17	24	43	33	36	28	34	24	29	26
AACCGTCATTTCGTCA	alt_5851_new	12	34	24	14	36	19	39	14	29	14
AAATGACTATTAAGTT	alt_5851_new	24	26	34	20	16	27	32	19	22	17
TGGCCCGTCACGCAGC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TAGCCCACTGACTTCA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GGGAATGTGTGCCAAA	alt_5851_new	38	31	42	34	35	31	40	38	38	38
CTCTTCAACCCCGCAT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
ATACGTATTGGATACT	alt_5851_new	21	29	19	22	20	23	34	14	20	18
CTGAGAGTCCTTTGCG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TTGTACTGCTCTAGTA	alt_5851_new	31	59	39	37	55	31	73	27	60	35
TGAGCTCCTTGGCTTC	alt_5851_new	16	17	16	18	11	12	23	10	28	16
TTCGGCCACTGCTTCC	alt_5851_new	26	26	31	13	38	25	30	27	35	27
TAAAATTGATCCCCAG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TCATCTTTCCGATCTA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CCATACATACTTGCCC	alt_5851_new	10	22	7	12	24	7	23	7	27	10
TCCAGCATTCCACAAC	alt_5851_new	50	100	58	42	104	46	119	40	139	33
TTACGCTCACTTTAAA	alt_5851_new	10	21	14	5	21	6	16	8	21	9
GTTCAGTACCTGCCGT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TTTGTTTGGTACCGCT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CGGTTAAGTATTGCCG	alt_5851_new	44	88	64	44	100	62	75	63	94	68
ATGTCCTGTTTGCAAC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TTGTTAGTGCATGATA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CTTAAGACCAACTGCC	alt_5851_new	6	10	7	15	12	9	11	4	11	8
GCCCGGTAAGACAGAA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
AGGTGATCTAGAACAG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
AGGCCAAAAACGTGTG	alt_5851_new	20	24	20	26	21	13	29	16	33	16
CTTTACGCTGATTTAC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CGACTAACTATGTGGC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TATTATCTAGAACAGT	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCCCTTGTGATAC	alt_5851_new	43	34	35	42	56	39	44	39	64	37
ATCGCACGTCCTTCTC	alt_5851_new	12	7	8	12	12	16	13	7	13	5
TGTTTGTATTGTATTT	alt_5851_new	36	48	49	24	46	31	44	31	54	27
AGGGGCAGGATGATAA	ref_5851_new	2	8	6	6	5	5	8	5	10	2
TGACATTAGCTCCTCG	alt_5851_new	35	47	52	33	66	32	50	37	47	31
ATGTGCTTCCCTTGGC	alt_5851_new	77	68	79	71	77	72	79	63	70	83
TGCTGGCTTTTCGGAG	alt_5851_new	33	25	38	29	38	43	38	27	24	38
TTTTCTCCTAGAGGCT	alt_5851_new	15	19	9	13	20	13	21	17	18	5
TATGCCTAGGATGATA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
AGACATCAAAAGGCTG	alt_5851_new	58	73	87	70	83	78	97	80	68	79
ATAGTATCTCACTCGA	alt_5851_new	12	16	6	7	15	9	9	12	10	2
AGAGATCCTCTCATGA	alt_5851_new	27	27	29	29	27	32	35	38	50	25
CGAACGTGATGAGTCA	alt_5851_new	31	30	53	26	27	33	48	35	35	22
TAGGACAATTCCGTTG	ref_5851_new	2	3	0	1	1	1	1	1	0	0
ATAATGATCTGACGTA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
ACGTCATTCTGTTCAT	alt_5851_new	6	15	7	13	18	11	14	14	23	7
CCGACGTGGATCTCTG	alt_5851_new	4	4	5	6	6	3	6	4	3	5
CCCTGTCGTTAGTAAA	alt_5851_new	7	13	3	4	17	3	19	4	21	5
GCCCACGCACGTGTTG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CTCATACTCGAGTGGC	alt_5851_new	27	18	23	14	18	17	12	14	19	9
CCAGTTAGATGGCTGA	alt_5851_new	15	15	22	13	17	13	19	19	18	10
CTGATGGGGTTCCTGA	alt_5851_new	25	22	20	18	25	13	16	29	17	12
ATGTCCTCGCTCGGTC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CTTAAAGGGTTTTCGC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
GGCATGAATAACCTTG	alt_5851_new	25	28	37	25	31	16	20	25	32	23
TATACCCCCTTTAGAA	alt_5851_new	30	27	25	30	41	21	47	28	43	23
CTCGTACAGGAGTGGG	alt_5851_new	6	6	10	5	3	4	6	6	7	2
TGACTTGTTTGCTATA	alt_5851_new	2	2	6	2	8	3	6	2	7	3
ATTTACCTGGTCACTA	alt_5851_new	15	26	24	17	30	15	23	18	28	16
TGTGGTTATTCTTGGT	alt_5851_new	161	192	209	164	224	165	206	170	184	144
TACAATCTCGTCCCCC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TTGGGCTCTTGCTTCA	alt_5851_new	15	32	27	23	26	25	25	24	41	17
ACAACCGGGTTTTAAG	alt_5851_new	38	72	66	39	66	45	71	48	87	38
CATGTAGGCCAGTAGG	alt_5851_new	28	55	42	31	59	38	60	39	57	37
CGGCGCGACGTAGGTC	alt_5851_new	0	0	0	1	0	0	0	0	2	0
TTGAACTATTGGTCCC	alt_5851_new	41	36	46	30	45	28	47	36	41	35
CGCTAGGCACCTACTC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
GGCATGTCCCTTGTGA	alt_5851_new	4	8	11	12	17	9	9	11	11	7
GAACTTGTTGCTGACG	alt_5851_new	14	16	18	15	13	15	17	16	15	12
CGTCATAGCATTTTCC	alt_5851_new	15	12	14	14	20	14	20	21	17	23
CCTAAGGAAGGTTTAG	alt_5851_new	33	34	31	32	42	29	47	29	42	19
GTTGCGTGCCCCTCTG	ref_5851_new	141	183	174	188	221	158	218	147	221	175
GGTTGTTTGAGTGATC	alt_5851_new	64	70	85	69	78	58	77	72	75	57
GTCCTGCGCTCATGAA	alt_5851_new	0	0	1	0	2	0	1	0	1	0
TTTAGTATGTGCTTAT	alt_5851_new	7	14	15	17	23	6	18	10	11	8
CGCGTGGACCTCCAGA	ref_5851_new	4	2	4	2	6	4	3	2	2	1
GACGTCTAAATCCGTC	alt_5851_new	65	92	107	91	100	70	90	91	116	79
GCTGTTGATGTCCGGT	alt_5851_new	20	25	30	22	32	21	21	17	19	20
GCTATGCACCAGCAAA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TGACCCTGCTCGGTTT	alt_5851_new	30	42	44	32	39	34	42	37	31	31
GCAACGTTCGACGCTG	alt_5851_new	16	25	20	13	21	13	23	9	28	17
TTTCCCAGATGTAAGT	alt_5851_new	41	34	39	42	51	39	39	29	48	30
TGGTGCCCAAGTCGTG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CCATAAGAGCACGCGC	alt_5851_new	17	30	32	25	42	17	34	20	33	25
CTTGTCCTCTGCTTAA	alt_5851_new	46	43	39	30	53	31	53	29	47	23
CTTCCCGCAGTTGGTG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CTTTTCGCGTATACCT	alt_5851_new	16	25	24	21	21	17	25	10	30	9
TAGCCGTTTCCACTAC	alt_5851_new	14	14	9	10	13	9	34	13	14	16
GTGCTACGACCTTAAT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
ACACGCACAGGGCATT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CGAAGTGTCCAGGAGC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
AGCCGGAACTTAATGT	alt_5851_new	17	18	27	23	23	19	30	22	27	19
CAGGTCCCGTTTTTCC	alt_5851_new	49	42	38	45	47	40	54	31	31	32
AGTGTCGTTGGGTCAA	alt_5851_new	11	19	10	12	17	13	16	13	13	17
GATGACTTGTTGAGAG	alt_5851_new	13	17	27	18	20	16	14	8	19	12
AGGTTTCCCACGAATG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
ATTTGCTCCTTCCGGC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CGCTTAATCGGGTCTT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CAACCTGGAATATGAT	alt_5851_new	20	20	18	9	23	10	23	11	26	14
GGGAAACCAGAGAGCG	alt_5851_new	1	4	7	4	5	2	6	1	9	6
GCCGCGACATGGTCTT	ref_5851_new	11	11	11	18	10	11	5	16	13	19
AAGGTCTAGCCACACA	alt_5851_new	15	21	11	7	21	11	22	12	31	8
ATGCCGACCCACCCAG	alt_5851_new	15	41	26	16	32	15	38	16	57	18
GCTTGATGAGCTCGTG	alt_5851_new	65	52	44	40	46	53	54	40	58	38
TGTGTCTCACGCCTGT	alt_5851_new	41	43	45	50	59	38	61	43	50	36
TCATCTTGCGACCACG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TAGACCCCGGGCTTGC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
AACGCCTAATCTTACG	alt_5851_new	1	7	4	1	5	7	8	3	10	5
GACTCGTCTGTCGCTG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TGCTCATCTCAGAGTC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TTCGACAATATTTTGT	ref_5851_new	20	11	26	11	19	22	14	7	15	13
TTCGATTCTCTCGCGG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
ATCAACCGTTGTCCTA	alt_5851_new	7	15	13	3	7	5	8	8	13	5
TATCCCTGTCATCTTA	alt_5851_new	174	226	202	170	245	175	249	194	209	154
CTCACACGTAATCCAT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TGTGTCAACTGCCTCA	alt_5851_new	5	8	7	5	7	8	4	2	8	1
TGTTCAGCTCTTAGCG	alt_5851_new	96	91	87	82	96	75	111	73	92	70
TCATTCACCATCCTGG	alt_5851_new	38	29	40	35	31	27	41	24	59	30
TCGACACTCATTAACC	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CCCCTCCACTTCTTCT	alt_5851_new	31	32	37	31	35	43	51	43	46	31
TTTTTGATGTGGCCAC	alt_5851_new	7	5	4	6	6	6	12	4	4	4
ACAAAACTATACTATG	alt_5851_new	6	7	6	8	8	11	9	4	5	7
TGGACCGGACTTGGGG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GGCACGCATATTTACT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
AAGGCCGACGTCTTAT	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TAGACCTTGTGTAGAC	alt_5851_new	48	54	66	44	66	36	60	41	70	26
TCTAATAAAAGCATAG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
GCATCGAATAGGTGAC	alt_5851_new	32	13	40	13	35	27	25	15	23	16
TGAGAGCCTCGGTAGG	alt_5851_new	10	6	8	9	10	7	13	3	9	5
TCCGGGAGAGAAGTCA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
GACGCCTGTCACTTCA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TGATCAAGTTGAACGG	alt_5851_new	5	7	9	10	8	7	13	3	12	4
TCCAGTCCGACCCGAA	alt_5851_new	12	12	27	16	14	22	11	12	20	12
CTAGATGAGCAATCCG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
ATTGTCTGCACTTGTG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
CTCATACAAGCGCAAT	ref_5851_new	7	6	7	5	3	8	5	10	17	4
GGCGTTTATTCCTGTG	alt_5851_new	0	0	0	0	0	0	0	0	0	0
GTTATGTAATCGTCAT	alt_5851_new	20	31	23	28	28	15	38	30	32	19
GTTACCCAGAAGGTGA	alt_5851_new	0	0	0	0	0	0	0	0	0	0
TTATTATTAGTTCGGT	alt_5851_new	17	25	11	10	12	10	11	10	16	15
CCACATCACTTGGATG	alt_6124_new	31	73	39	26	75	28	69	32	73	26
TCAGTAATCAAGTTTG	ref_6124_new	78	102	89	86	86	67	99	67	99	49
CATAATTGCTGAGAAG	ref_6124_new	20	26	19	26	34	19	18	20	24	19
ACTTCTCATCAGCATT	ref_6124_new	3	2	4	0	6	0	1	3	0	4
TTCGACGTGTCTTAAG	ref_6124_new	4	11	3	19	8	12	13	8	11	6
GATTAGTTGAACGTAT	ref_6124_new	190	269	191	184	286	168	320	171	274	129
AAATAAATAAAGTCGA	ref_6124_new	24	34	19	25	20	21	42	18	26	27
TAATCGAGGAACGAAG	alt_6124_new	43	68	54	41	75	40	59	48	62	36
TTTCCAACGAGGTATC	alt_6124_new	44	46	69	58	51	49	58	54	60	32
TGGTCCTTGTCTGTTA	ref_6124_new	6	13	15	13	7	4	11	12	7	10
CGCCAGTTGCGGAGAC	ref_6124_new	4	15	14	6	20	12	16	9	16	7
GTCCCAGCTCGGACTC	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TGGGGTCCATAGTTAT	alt_6124_new	24	31	35	25	28	29	24	19	22	15
GCCACCCGGTGCCAGA	ref_6124_new	35	41	28	40	63	24	51	28	56	33
TATCTCAACGTCAGCT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
GCATCCTACGCCGCAG	alt_6124_new	141	183	161	140	215	121	161	151	184	113
GTATATAGAATTTTTT	alt_6124_new	55	88	73	61	80	62	87	49	92	51
CTCCATGGTTTAGGCT	ref_6124_new	17	24	15	11	16	14	32	8	27	10
CACTGTATGTCCACGT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CAGTTCCTGAGGTAAC	alt_6124_new	53	80	83	71	68	62	69	55	89	64
AGTTTACTCGTTCGGA	ref_6124_new	17	25	25	21	27	15	23	14	19	13
TGGGAGATGGCTCTGG	ref_6124_new	47	58	63	29	46	46	56	32	65	41
TCTTGCACGACTGGGC	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CGGCTTTTTGCAGCCA	ref_6124_new	22	30	25	27	28	21	27	17	36	20
AGTGGATCATGGAAAT	ref_6124_new	9	20	23	14	22	12	23	11	26	20
CGCGGTTTTGTCTTCT	ref_6124_new	64	68	63	63	59	54	59	58	64	55
GTGTGGGCAGTGTGGC	ref_6124_new	16	21	9	15	30	8	17	9	18	10
TGTTATCATTCCTTCT	alt_6124_new	311	292	348	318	298	258	311	270	314	246
GAGCCGTGGCTAAAGT	ref_6124_new	29	21	18	28	26	24	42	19	33	25
TGAATAGTGGATTTAA	alt_6124_new	50	73	58	50	65	52	59	51	74	44
AGAGCGTGTTCACTAT	ref_6124_new	5	6	4	5	1	1	8	4	0	3
CGGAAGGGGCGTTTTT	ref_6124_new	4	3	9	9	8	5	6	14	7	3
CATCCGCTTTAGGGTA	ref_6124_new	42	39	46	27	52	38	55	34	62	38
CCTTTGGCCGGCGTGA	ref_6124_new	3	21	3	7	11	5	6	7	5	4
TACGGAAACGTTGGCT	alt_6124_new	58	77	83	73	91	60	101	67	97	45
TGTGTGAAAGGTGCTC	ref_6124_new	5	12	6	4	5	9	13	5	10	5
TTGGATCCCGCGAGTG	ref_6124_new	182	249	192	182	218	164	239	167	244	186
ATTCCACATAGCTGCC	ref_6124_new	13	30	19	11	28	17	22	15	25	17
AGTAGTTCTGGAGTGC	alt_6124_new	86	149	121	97	149	93	156	117	168	80
GTTGCAAACTAGCACG	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TCCTTGTCCCACGCTT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TGTTCGACGTTTTTTG	alt_6124_new	153	206	149	103	208	145	208	139	227	136
CATTTACGTAGATCGG	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TCCATGGCTAAGGATT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CGAATACGGGGGAACA	ref_6124_new	16	23	17	19	31	19	26	21	19	14
TCATACGACTGCCTTC	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CATGTGATTTATATGC	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TATGTTTAATTCTGGT	alt_6124_new	22	43	28	22	44	30	31	25	28	26
GTCCACCGCCCGCTCA	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TCAGGCTACGATTCTA	ref_6124_new	0	0	0	0	0	0	0	0	0	0
ACTTATGTTGTTCGTT	ref_6124_new	27	39	27	27	33	20	34	34	28	24
ACGACCGTCAAATCGA	ref_6124_new	1	2	1	1	3	1	4	1	2	0
CGAGGCCGTCTAATCT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
AGCGTCTCCAAGAAAA	ref_6124_new	3	5	5	2	13	3	11	5	15	4
ATGAAATTTCACCTAT	alt_6124_new	91	100	88	76	131	90	142	86	130	84
ATGTTCAGCTTATGCG	ref_6124_new	9	6	12	7	5	8	4	11	5	9
TATTTCATCATATTTG	alt_6124_new	0	0	0	0	0	0	0	0	0	0
GTTAGATGCTGGTGTC	ref_6124_new	19	33	31	20	43	21	36	22	56	19
TTTATACTGCGCTTGT	ref_6124_new	10	11	6	9	9	5	8	10	14	8
GTTTTCTAAGCCTAGA	ref_6124_new	82	115	78	85	115	61	115	88	118	57
AGTGAGTAATGGGCAC	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TGTATCGGTAAAGGTT	ref_6124_new	29	26	21	17	21	10	22	18	17	16
TTACCTTCAACCGTTG	alt_6124_new	45	69	65	53	68	42	70	35	82	49
CATTACTTGCCACCCC	ref_6124_new	23	28	23	27	35	24	39	26	32	19
TCGGTTTGTCATGGTG	ref_6124_new	26	42	40	38	46	43	41	36	51	29
GCGGTCGCGTCTATCG	ref_6124_new	6	37	16	12	29	10	24	6	31	6
GTATGGAAGGTGGTAC	ref_6124_new	18	30	29	23	21	13	33	28	31	15
AACCTTCGTTGTCACT	ref_6124_new	9	8	5	6	10	5	9	5	17	4
GGTTTCGTCCCCGCCT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CCACACGCTCCATGAT	ref_6124_new	108	144	108	102	142	116	167	89	156	95
CTTCGGTGACGGCGTT	ref_6124_new	113	153	150	126	158	132	146	122	163	102
ACTCCCATCGCCTTGT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CTCGACCGATGCTCTG	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TGATCGCCTGCCGACC	ref_6124_new	48	95	55	55	72	58	90	57	93	42
TGTTAGAATTATTCCG	ref_6124_new	48	55	62	58	39	44	32	50	46	30
TCTTTTGTTCGGACTG	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TATCGTTGTATACGAT	alt_6124_new	362	457	380	318	468	300	474	309	475	327
TTGCCCCATTCTTCCT	ref_6124_new	52	70	47	57	46	48	77	42	74	34
AGGTAGTATCAAACTT	ref_6124_new	14	25	15	19	22	16	30	7	23	18
CCCTTGCTCAGTTAAC	alt_6124_new	62	74	90	73	89	57	94	78	80	77
TATACTGGCCTCTTCC	ref_6124_new	2	13	10	7	10	8	17	4	3	3
GTTATGGTATTCGGAG	ref_6124_new	44	55	45	31	66	35	56	32	53	34
TGAGCCACTCGAGATG	ref_6124_new	0	0	0	0	0	0	0	0	0	0
GGTGTGCGCTTGTCCA	ref_6124_new	37	26	36	34	36	26	36	28	34	20
TTGAAGCTGTGCATTT	ref_6124_new	33	57	62	51	58	35	54	39	63	49
AGCGCTAGGCGCTTTG	ref_6124_new	29	26	29	22	26	22	21	24	26	11
GCAGTACCCTCGACGA	ref_6124_new	27	44	48	31	67	33	62	28	50	38
GCAGTGTCGGACCTTC	ref_6124_new	11	9	3	8	15	8	15	5	13	9
TGGATTTAACCTAAGT	ref_6124_new	25	42	33	22	35	27	48	27	61	21
ACGGCTGGGGGCTGAC	alt_6124_new	103	157	115	104	118	92	148	103	148	104
TTATTAGGTTGTAAGG	ref_6124_new	28	42	29	18	47	30	29	30	45	25
GCAGTAATTGCATTAG	alt_6124_new	45	51	59	42	79	45	67	38	55	56
CATTGTGATCTCCCTC	alt_6124_new	11	21	8	5	14	4	17	16	15	7
TGCGTACTACTATTCT	alt_6124_new	21	20	34	24	28	25	21	21	24	19
GCCTCTAACGCGCTCC	ref_6124_new	0	0	0	0	0	0	0	0	0	0
AGGGGAAATAAGTGCC	alt_6124_new	120	153	137	107	125	129	153	112	164	111
TGCACTTAGCCACATG	ref_6124_new	49	96	61	59	108	50	88	50	104	58
GCTCAGTTTTGCATGC	ref_6124_new	28	52	43	39	56	33	58	34	51	28
TGATCGTTGCCAAATC	ref_6124_new	50	100	65	61	70	54	101	55	90	49
CTGCTTCTAAAGTAGA	ref_6124_new	30	28	29	22	31	22	32	24	39	15
CAGTCAGGCTTCACTC	ref_6124_new	29	49	32	25	41	36	37	14	45	26
GTTTCTAAGGTACTTC	alt_6124_new	81	126	94	89	104	60	126	79	124	69
TATGTTTAACGCAACA	ref_6124_new	0	0	0	0	0	0	0	0	0	0
AAACTAAGGCTCTAAA	ref_6124_new	6	4	13	9	6	9	8	4	15	8
CATTTACCAGTGCCGG	ref_6124_new	6	12	12	7	10	10	5	4	14	3
GTTCAGCCCAACCGCA	ref_6124_new	8	9	10	5	7	5	14	11	21	10
TTCGGTGCTTTGTACG	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CCAGCGTTAATCCTGA	ref_6124_new	2	3	0	2	7	2	2	2	4	1
ACATTAAACAAGTCAT	alt_6124_new	36	46	30	34	30	35	55	22	54	29
CGCGCTTAGTTCGAGC	ref_6124_new	13	12	15	17	15	15	19	15	23	19
AAATGCTTCAGAGTGT	ref_6124_new	37	52	58	45	46	31	49	32	54	42
CTTGCAGCTTTCCTGC	ref_6124_new	0	0	0	0	0	0	0	0	0	0
TTCTAGGCAGTTCCGT	ref_6124_new	23	39	25	24	45	8	47	23	29	21
ATATCGGCCATGACTT	ref_6124_new	71	82	95	77	117	53	94	73	132	75
CACTGTTTATTTGTTT	ref_6124_new	89	69	98	100	62	71	97	69	81	62
GTATCGTTGTACCTGG	alt_6124_new	31	24	28	30	36	18	52	32	50	28
GTATGTTTGGCTGTCG	ref_6124_new	23	28	40	31	36	19	43	29	41	20
TTACGGCTGCGTACTG	ref_6124_new	5	16	11	5	9	8	13	5	14	6
CACTGTTACTTTGCTG	alt_6124_new	38	58	57	46	74	40	53	55	85	42
TTGATAAATGGACCCG	alt_6124_new	26	25	23	16	33	20	34	20	34	20
AGATGTTCTTAAAAGA	ref_6124_new	25	29	31	27	22	28	32	22	34	14
TTTGCAATCCTTATCG	ref_6124_new	46	46	55	33	42	35	43	27	53	29
TGTCTTGTTCTAACTG	ref_6124_new	7	4	6	4	11	6	6	2	4	6
GGACTGCCTTTGTTCC	ref_6124_new	26	54	29	19	58	24	39	31	49	30
TTGCGTGATAATTGCT	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CTTCCACCCACCTCAT	ref_6124_new	25	41	35	25	57	18	50	24	45	22
CATTGATGGAAGTTAG	ref_6124_new	50	45	68	43	73	64	81	48	62	41
CTCTTACTGTTTTTAG	ref_6124_new	0	0	0	0	0	0	0	0	0	0
CAGCCATATTCTTATT	ref_5925_new	5	11	9	7	14	7	24	4	12	5
TTCTAACGGAACACAG	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TCGCGGTTTAATGAGG	ref_5925_new	24	45	31	27	36	22	42	31	27	28
TTGGGATTAAGGAAGG	ref_5925_new	23	39	39	15	29	24	40	16	38	24
CAGGTTCCACGATGCC	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TTAGTGCTGTTTAGCC	ref_5925_new	21	42	39	26	38	23	29	29	52	15
TTCGGTGTCCAGGGCT	ref_5925_new	29	52	32	27	46	27	52	23	49	20
ATCTACCGACACCGCT	ref_5925_new	45	54	44	47	47	39	43	23	62	43
GCCGGCAGCTAGTCGG	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TTTTGATATTGTTGGC	ref_5925_new	3	6	14	6	8	8	10	5	11	7
GGTAGGAGATACTGCG	ref_5925_new	4	13	7	3	9	6	10	8	14	9
ATCAGGCTACAATCCT	ref_5925_new	4	10	9	6	3	6	9	1	12	8
GACTTGGTCCTGTGTT	ref_5925_new	24	51	36	30	52	25	49	11	49	23
TGCTCCCAGATCTGTC	ref_5925_new	31	62	46	41	46	33	58	30	58	25
AGGCCTGTTCATTGAC	ref_5925_new	0	0	0	0	0	0	0	0	0	0
ATAAATAGTGCCGTGG	ref_5925_new	47	72	42	52	77	30	61	50	68	44
CTTGGCGGTCCGGCCT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TTCCACTTTTTCCGGC	ref_5925_new	0	0	0	0	0	0	0	0	0	0
ATATCAATCTCCTCCT	ref_5925_new	10	8	15	6	16	12	16	12	18	8
AATCGTCCAGTTGCCC	ref_5925_new	59	102	62	57	82	61	110	60	94	53
CATAGTATCAGTTCTA	ref_5925_new	4	5	7	5	12	6	10	7	9	8
TGGATACATACTTCCT	ref_5925_new	20	21	13	8	15	18	24	12	15	6
CCCTTAAACTAGCGCG	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TTCGCATTTCCGCTTG	ref_5925_new	20	17	20	13	13	19	28	10	23	16
TTTACGGTCCCTCTAC	ref_5925_new	21	32	23	21	35	22	38	23	44	10
TCGGCACCCATTTCTA	ref_5925_new	9	18	24	19	26	11	17	21	27	10
TTTAGTCAGTATTATA	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TCCCCATCTACTTCCG	ref_5925_new	7	28	11	7	17	4	17	11	15	7
TAATCAACCCCGCCCT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TTCTGTCCTGGCATCT	alt_5925_new	80	120	95	88	123	72	120	63	157	77
ATAATTCATCTGTTAC	ref_5925_new	0	0	1	0	0	0	0	1	3	0
GGATGTGCGTCGTCGT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
CTCGCGTATTCACTCG	ref_5925_new	18	19	21	16	23	12	16	9	11	9
GAATTGCGTCGGTGAC	ref_5925_new	16	24	22	9	24	9	27	14	20	15
TCGGCGGTCAGAAATT	ref_5925_new	17	14	13	10	25	8	20	10	17	6
CGTGATCTCTGAAATA	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TCGGCTACTCAGGTTA	ref_5925_new	2	7	5	7	4	7	19	7	11	5
GACTTTTGGACCAATG	ref_5925_new	10	15	6	9	16	9	20	6	16	11
CCGCGATTTGAAGGAC	ref_5925_new	4	2	10	4	4	2	5	2	3	5
TGAAGTATAACCACGC	ref_5925_new	4	6	1	1	10	2	2	4	5	5
CTATCACAATTAGCAA	ref_5925_new	30	57	66	65	77	38	80	55	58	46
TGACCGTTTTCTTGTT	ref_5925_new	7	19	11	10	7	6	9	14	7	17
TTTGAATGGACATTTA	ref_5925_new	26	47	23	33	47	17	39	19	67	28
CGTACGTGTGGCTAAG	ref_5925_new	0	0	0	0	0	0	0	0	0	0
AGTGTTTTGGTCGTAC	ref_5925_new	6	16	15	6	16	11	9	5	13	4
CATTATGCCCCTTGTT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GAACTTATCCTGGGCG	ref_5925_new	24	39	41	41	43	28	49	28	42	20
ACAGCCTCGGTGGATG	ref_5925_new	7	11	3	8	8	11	14	7	11	8
GAGTTCCGAGAAGAAC	ref_5925_new	4	4	3	3	8	0	4	3	3	0
TAGTGATAACGTCTTT	ref_5925_new	10	20	6	10	12	13	14	7	21	6
CGTAAGGTTTTTATCG	ref_5925_new	0	0	0	0	0	0	0	0	0	0
CGGTAGACGGATAACG	ref_5925_new	20	28	36	25	28	21	34	25	33	26
GTTATTTCACACTTCT	ref_5925_new	5	7	5	4	8	4	12	7	8	7
GCATCCGTCCTGTAAT	ref_5925_new	2	1	1	0	0	0	1	4	1	0
CGTCTATCAGACGTGT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GTTGCTTCGTGTATAG	ref_5925_new	30	45	27	29	62	33	50	23	43	25
AAGGCGTGGGAACATT	ref_5925_new	6	11	12	2	11	7	6	1	5	3
CGCATTGATTAGGGTC	ref_5925_new	10	16	12	7	16	15	10	15	11	5
GGAGGCAGCCAGTGCG	ref_5925_new	11	22	18	17	34	13	19	16	24	15
CTGGGGCTTTTACCCT	ref_5925_new	12	21	15	9	21	9	17	15	12	8
TAAATCGTAAGCCTTT	ref_5925_new	6	7	15	4	11	5	6	4	9	7
GGGCCTTGTACACTGG	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GCTGGTTTGGTGCCTT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
ACGCAGACACCGATCT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TCTCGCTAACATAAAC	ref_5925_new	12	13	18	12	16	23	27	14	17	15
CCCTTATCGACGTCGA	ref_5925_new	30	63	36	40	74	41	67	29	84	26
CACTCTAATTCCTGTC	ref_5925_new	0	0	0	0	0	0	0	0	0	0
ATGTGTCGCCACCTTT	ref_5925_new	6	7	6	3	12	3	5	4	5	3
CTTACTCACTGTTCGC	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GCTGTTGCTTGAGTCT	ref_5925_new	0	2	1	0	0	0	1	0	1	1
CCCTTAAACTCGCGCG	ref_5925_new	85	117	102	70	118	80	93	73	107	54
AACTGGGTTTAGTTTG	ref_5925_new	21	44	25	19	47	25	35	31	45	19
CCATAAGCGTTCTTGT	ref_5925_new	53	107	85	58	98	61	108	48	97	62
TTCCTCTTCATATAGG	ref_5925_new	4	8	1	6	6	3	5	0	6	5
ATAAAATTCGCCAGCC	ref_5925_new	132	161	163	124	149	124	144	112	163	112
AAATTTTGTACTACCA	ref_5925_new	0	0	0	0	0	0	0	0	0	0
ACCTGTCGTCTTTACG	ref_5925_new	30	80	41	29	86	31	111	35	79	23
GTTATGCTCTTGTCCA	ref_5925_new	15	30	18	21	24	11	34	16	34	14
GTCAGGATTCGGTCCT	ref_5925_new	1	0	0	0	0	0	1	0	1	0
AAGACACTTAGTTGTG	alt_5925_new	65	76	83	61	97	53	124	63	113	53
CTGCGTTATCGAGCCA	ref_5925_new	21	37	31	19	24	15	56	18	43	21
CATCGGCACTGTCCGG	ref_5925_new	25	47	42	33	52	25	46	29	55	28
GCTCTGGTCAGTCTAC	ref_5925_new	30	59	47	60	64	46	51	48	67	35
GAAGGCCGGGAATTGG	ref_5925_new	85	115	113	99	126	74	136	79	116	104
CCCCTGATTCCCCGCT	ref_5925_new	65	90	96	51	100	65	64	80	84	45
TAACGTGCAAGTCACA	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GGTAGATACGTCTTCT	ref_5925_new	21	23	24	6	19	13	27	18	26	18
TCGAACGTTATGCATT	ref_5925_new	22	32	19	27	41	11	40	8	37	15
CTAATGAGTTGGCGCT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GTGGTTAGTTTCCGTA	ref_5925_new	7	8	8	5	7	8	5	3	10	4
ATCGTCAGATGATTAG	ref_5925_new	6	6	6	4	11	3	8	9	10	3
ATGTCACTGTCTTCTT	ref_5925_new	19	21	27	10	24	21	24	17	19	23
AATTTCATTTTTACGG	ref_5925_new	12	12	15	12	15	16	20	12	15	14
GCTGACAACGCACCTG	ref_5925_new	4	20	8	7	13	11	16	9	14	5
ATACTATCTTGAAGCA	ref_5925_new	19	18	15	9	20	13	17	15	13	14
GGGCGTACAGCTCAAT	ref_5925_new	5	7	3	11	13	6	6	4	10	3
GTGTAGCCTCTTCTTA	ref_5925_new	3	1	1	3	5	0	10	1	2	1
AAAAAGAGTATGGTTG	ref_5925_new	12	16	10	5	16	11	10	13	19	5
GTTAGGTACATGAACC	ref_5925_new	9	13	10	6	19	9	18	15	14	5
CTACGGTCTTTGAGTG	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TCGAGGGTTTGAACCT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GGCGTTTGGTTAAATA	ref_5925_new	26	40	33	26	49	23	37	22	34	29
TGAATTACATTGCGTA	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TGCTTATAGAATCCGC	ref_5925_new	4	12	3	2	5	4	8	3	10	4
AACGTGATCTGCCGAA	ref_5925_new	0	0	0	0	0	0	0	0	0	0
TCACGTGCAAGTCACA	ref_5925_new	9	21	14	11	28	12	21	16	19	16
CGACACATTTTCAGCT	ref_5925_new	53	34	51	39	70	37	53	33	70	25
CTTCGATTGTGGAATG	ref_5925_new	80	109	105	75	116	73	108	74	113	61
AGTTGTTAATCAATTA	ref_5925_new	0	0	0	0	0	0	0	0	0	0
ACCGGCCCGGTTCTTT	ref_5925_new	0	0	0	0	0	0	0	0	0	0
GGTCATGTGGTGAACG	ref_4574_fdr	27	24	36	25	34	27	32	26	35	24
TCTAGTCTCGCCCGTG	ref_4574_fdr	36	38	32	33	34	22	32	24	43	26
TTTCGTTTTAGGGCAG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTAGTAGGCCCTA	ref_4574_fdr	43	39	65	57	45	30	52	50	54	39
AGTTTTAGTCAACATG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTTGGGAATCTCA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CATCGATTCCTTGTTA	ref_4574_fdr	47	58	41	40	52	48	48	41	52	41
AAAGCAATACATTCCC	ref_4574_fdr	5	7	3	3	11	2	12	1	8	1
CAAGCGAATCATGTGG	ref_4574_fdr	43	40	54	47	37	40	49	29	34	25
GAATCGAAATGGTGCG	ref_4574_fdr	40	34	51	48	32	37	34	29	34	34
ACGAACCCCATAGGTT	ref_4574_fdr	74	55	72	57	63	59	77	69	77	60
GGGCTATTAGGGACGA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CACCCCGCTTGGTGCA	ref_4574_fdr	26	55	24	19	55	14	60	21	57	13
CATTTATCTCTCCTGA	ref_4574_fdr	13	28	31	23	16	13	19	21	15	14
CCCGTGTGTTTGCCAT	ref_4574_fdr	50	187	78	55	176	43	169	68	186	38
GACCACGGTTTTCTTT	ref_4574_fdr	8	25	11	16	15	6	16	8	13	13
ACTTTGTTGCCAGTAT	ref_4574_fdr	0	0	0	0	0	0	0	0	0	1
TTTACTATTGTACGCA	ref_4574_fdr	53	66	71	68	86	53	105	68	89	66
AAACATCAATCAGGCT	ref_4574_fdr	43	36	51	53	39	38	39	45	43	47
TTGAAGCTGCTGGTCA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTATGTCGTTGAC	ref_4574_fdr	17	15	14	16	16	12	9	15	19	20
CATATGTGGCTACCTG	ref_4574_fdr	3	2	4	2	3	4	8	2	6	3
GGAATTAGATGTGTCT	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTTCAGATCGCGA	ref_4574_fdr	52	72	77	58	58	55	68	58	53	62
TCTGAAATAAATGCAC	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTGTACTCAGGAC	ref_4574_fdr	0	2	4	1	0	0	3	0	3	0
TATCACGCTATGGTGC	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
GTCCACAGCGTCTGAA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TACATCCTTATTTCTG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTTCATGGCGCGT	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TATTACGACTGTGACG	ref_4574_fdr	58	50	45	65	49	37	37	43	44	50
ATTGTATTGAGATGAG	ref_4574_fdr	19	17	31	28	22	28	25	32	34	23
TCCTGCATTGTTGGAT	ref_4574_fdr	23	26	26	29	31	23	22	21	31	28
CAATAGTCCTCAGAAT	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCTTGACTTGTGC	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCACCTGATCTGT	alt_4574_fdr	27	80	38	28	75	46	71	34	86	30
CGCAGCTGAAAGGTCA	alt_4574_fdr	58	120	61	76	89	43	105	51	121	52
AATTATGTGAACATAA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TAACTTCTATCGGGCG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
GAGACATCGTTGCAGT	alt_4574_fdr	102	189	143	103	199	109	189	120	215	87
GGTGTCTTTTTTCAGT	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTCTTGTAATTTC	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTCAAGGTGCTTT	ref_4574_fdr	1	0	2	0	0	0	1	0	3	3
TGAAGAGCAATTGCAG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TGGAAAACTGCCAACT	ref_4574_fdr	27	19	22	24	21	12	27	17	19	12
AAAGTTAGGTTACAGG	ref_4574_fdr	75	81	109	101	83	68	93	81	85	82
ACTTTGTTGCCCGTAT	ref_4574_fdr	118	99	137	124	117	114	126	95	118	104
CCATGTGGCCCTTAGA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
GTATCTTTACGTCCAA	ref_4574_fdr	3	1	3	1	0	0	2	2	2	5
ATTGTCCTCATAAGGA	ref_4574_fdr	12	3	9	5	4	6	5	9	4	4
GTGTGTTGAGTTGCTT	ref_4574_fdr	17	17	20	24	9	14	18	20	26	23
CTTGATTTATCTCTCG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCTTTCCTGTTCG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CATATAACAGAGTCCA	ref_4574_fdr	153	115	165	172	176	161	156	147	142	146
GAGCCTGCGGCACCTG	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
AGATCGCAACGAATGT	ref_4574_fdr	3	3	5	1	1	1	2	4	1	2
CATAGCTACTCGCGAC	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
GAGGGTGGGGAATCAC	ref_4574_fdr	9	7	15	9	7	3	9	10	9	10
GATTGTTTACTCAAAT	ref_4574_fdr	18	8	25	14	9	14	20	17	11	13
CACCCGAGCGTAAAAA	ref_4574_fdr	13	9	11	10	9	10	11	5	11	8
CCTGCCCTTCTCTGAA	ref_4574_fdr	49	76	63	67	57	49	55	59	55	49
GAAGCGTTTATGTGGA	ref_4574_fdr	40	52	77	42	66	50	58	36	62	39
TCTGTGCTAAATACCC	ref_4574_fdr	28	51	28	26	53	33	56	21	50	26
TGCATGGGCCTTACCG	ref_4574_fdr	83	87	120	85	115	85	79	84	99	50
TCTAAGCAAACAGACC	ref_4574_fdr	24	20	16	12	21	23	19	21	8	16
GAACCACACAGCGCTT	ref_4574_fdr	10	20	20	17	16	8	12	15	16	8
GGCTCGGTATGTTCCA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGGGTGGCAATGC	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTGCCACCCTGGA	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
CCGTCATTTGTAAATT	ref_4574_fdr	67	69	80	60	67	42	71	52	63	68
CGCTTTCTTCGCCATT	ref_4574_fdr	0	0	0	0	0	0	0	0	0	0
AATGGCGTGTCGATGC	ref_4574_fdr	9	21	22	15	28	22	26	19	19	24
CCGGGCCCACGTTCTC	ref_1915_missing	5	6	11	6	11	3	3	9	11	2
ATGTGGACCTGAACTT	ref_1915_missing	91	79	99	87	74	111	73	74	75	90
ACTACGCTGTAGCCTT	ref_1915_missing	92	77	120	79	76	73	87	78	84	72
CTAGCGTCCCTGTTCG	ref_1915_missing	48	38	50	44	53	32	39	31	66	36
GCTTGTTTCAGTTCTC	ref_1915_missing	24	18	15	20	27	19	22	13	17	14
ATCGCGTATCGCTTCG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
GTACCATCGCAATTAT	ref_1915_missing	17	17	21	14	13	14	11	19	15	10
TCTTCAGCTCGCAGTA	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
TCGTCGACCCAATTCA	ref_1915_missing	27	20	19	15	28	14	30	28	28	11
GGCCATGCATAATTCG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
TCATGTTGGACTCTTA	ref_1915_missing	80	85	102	89	103	101	106	108	98	80
ATATCGGGCGCATAAG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
ATCGACTCCTGCGCTC	ref_1915_missing	18	15	18	13	25	14	21	6	38	12
TTTGCGTTCGACGTTT	ref_1915_missing	29	34	23	26	29	16	32	30	31	24
ATGGGGCCCGCTATGA	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
CTGCGAGAGCATAGAG	ref_1915_missing	100	114	128	116	99	111	119	80	121	91
GGTTTCTGGCGCACCT	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
CCTGTCCCTGCATGTT	ref_1915_missing	18	15	21	13	15	15	19	11	29	16
TGCAGTAGATTTCGTG	ref_1915_missing	43	56	50	54	51	64	63	53	61	39
CCCAGGATGGAATCTC	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
CGAGTTACGAAAGGTC	ref_1915_missing	27	24	38	31	27	24	45	25	31	27
CCTGCGGTATAACGGA	ref_1915_missing	56	58	73	69	69	44	45	51	75	52
TAGCTATTCTCGCCAC	ref_1915_missing	42	36	51	35	31	32	30	34	28	34
TGATTTTTCCACATGC	ref_1915_missing	16	10	13	4	12	16	11	11	9	7
TAGGTCTTTTTTGGCC	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
CCGGGCGGGTCTGGCT	ref_1915_missing	191	219	212	173	224	174	207	165	214	156
TGTGTATACTACATGG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
CCTGTGTGTGCTAAAC	ref_1915_missing	35	72	60	66	88	45	64	61	91	54
TGCGTAGCTCCTCTTG	ref_1915_missing	31	29	30	26	20	33	28	39	24	24
GCATGTCGCGAATTTC	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
GCAATGACTCACATCA	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
GTTCGATGACTATGGA	ref_1915_missing	159	123	201	167	127	144	154	147	126	131
CGTCCCCCAGCGCCCA	ref_1915_missing	7	10	6	10	12	10	8	12	13	6
GTATTAGGCAGCTTAT	ref_1915_missing	25	16	22	35	31	31	28	22	24	18
ACCCCACTTGGGAAGA	ref_1915_missing	119	128	151	139	141	131	102	104	149	126
CGGCCGCCACAGGCCT	ref_1915_missing	2	0	1	1	4	2	2	2	0	5
TTCAAAGCTCGATAAG	ref_1915_missing	24	26	29	28	31	32	24	26	20	24
TGTCCGTGCCCAATAC	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
TTGTATGTGAGGATGA	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
TGCACTATACCTTGAT	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
TGGTTTGTCGCGCACT	ref_1915_missing	33	49	38	39	31	35	39	42	47	40
TGTACGCTGCTAACTG	ref_1915_missing	86	87	131	109	88	106	85	81	107	87
AACTTACGGGCGTTTA	ref_1915_missing	19	16	14	14	10	9	11	15	15	10
ACCGAATGTCTCCATT	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
CCTAAGTTGAGTTACG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
ATGTCGGTGAAAATAC	ref_1915_missing	30	31	48	38	33	32	36	34	32	23
TCCTACAGCATCCCTC	ref_1915_missing	6	5	8	10	5	4	9	9	8	5
TTTTTCACTTCAAATG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
AAAATTGTATGTCGCA	ref_1915_missing	16	16	23	13	18	15	22	13	19	21
CCATGTTATATTGGCG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
CCTTATCAGAGGATCG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
GAAAACCCTTGGTACT	ref_1915_missing	17	26	20	21	25	20	22	26	24	20
TGTGTAGTCCGTATTT	ref_1915_missing	8	19	23	11	20	23	22	24	22	15
TGAGTCTCGTCTCATG	ref_1915_missing	10	21	22	21	24	18	16	10	29	16
TGCGGTCTCTCCGGGC	ref_1915_missing	26	22	30	27	25	19	31	28	28	19
TAGACAGTGGCAGTTG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
TCAACCCGGTCATCTC	ref_1915_missing	11	27	32	17	20	21	24	7	12	14
ACGCTACATACGCGAT	ref_1915_missing	100	93	127	113	89	101	98	84	120	92
GCTGTGCGTTGACGAA	ref_1915_missing	13	22	16	19	24	16	16	15	13	19
TTCGTTGCGTGCAATT	ref_1915_missing	68	44	88	56	48	61	56	70	70	56
ACGCTTCCGACACATG	ref_1915_missing	28	38	39	29	25	40	21	25	26	25
GGATCCCTGGTGGGAG	ref_1915_missing	161	149	165	165	175	138	183	111	149	154
ACCAAAAGAGATGCGT	ref_1915_missing	143	105	152	154	134	121	125	120	144	113
TGGTGTCAGCTTGTGT	ref_1915_missing	83	61	100	68	86	65	68	59	83	67
TTCATTTTATCTTCGG	ref_1915_missing	0	0	0	0	0	0	0	0	0	0
TCTTAAAATGATACTA	ref_1915_missing	49	37	64	56	46	56	50	43	53	43
CGGGGACGAAACTTCG	ref_1915_missing	47	40	34	29	32	40	47	45	30	40
ACATGTTCGCGCTTTG	ref_1915_missing	40	40	44	43	40	44	43	39	50	38
AACAGCGGCGCATTAT	ref_1915_missing	78	52	80	62	59	62	66	60	71	57
GCCGTAGTCAGTGGTT	ref_1915_missing	2	5	5	5	2	2	4	0	3	6
GACGCTGTGTGTGAAT	ref_5830_new	12	22	8	3	22	9	16	3	17	9
TTTAACTAGCTTGACC	ref_5830_new	2	23	5	6	20	4	14	5	15	2
GTGCCCGCTTCTCAGG	ref_5830_new	7	20	19	22	25	14	28	12	28	14
TGGCCATTTTATTGGG	ref_5830_new	0	0	0	0	0	0	0	0	0	0
ACTGATGAGCGATTAA	ref_5830_new	24	43	33	25	47	21	57	21	43	30
TCCTGAATTCAGAGCT	ref_5830_new	21	59	29	20	52	28	38	16	47	18
AGCTCCATACAAACTA	ref_5830_new	21	22	14	16	28	16	25	11	19	11
TTATGCTTGTGGATCG	ref_5830_new	8	7	5	3	11	10	10	6	9	10
AGGTCATGACGGCCTT	ref_5830_new	13	17	24	19	29	25	32	21	38	17
GGTCCCTTCGGAGCAT	ref_5830_new	17	31	25	22	39	17	36	28	34	20
AGGCCCGTGTGACACA	ref_5830_new	3	9	7	3	14	8	7	5	7	7
CGATTAATCTTGATAA	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CCACTGCTATCTTTGG	ref_5830_new	4	4	5	1	12	4	12	3	14	3
TTTGGTGTTCAGGAAG	ref_5830_new	14	34	18	14	24	26	26	12	24	13
GCTTATCTATTTATTA	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CCTACGATTATCGGAT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TACGTTTTTATGGCTA	ref_5830_new	5	15	14	14	13	8	16	10	25	12
TAGCCGGTTCATGGCT	ref_5830_new	49	62	74	68	92	51	89	42	83	43
GTTGTACGCTAGACAC	ref_5830_new	10	16	5	5	17	6	13	2	17	6
GTTTCCCACGAACGCT	ref_5830_new	41	88	53	37	87	33	96	39	71	35
GTCGATATGGGATGTC	ref_5830_new	0	0	0	0	0	0	0	0	0	0
GACTAATCCGGTATAG	ref_5830_new	2	9	1	0	0	2	1	2	2	2
AACTATGTCGACTATG	ref_5830_new	3	8	6	3	5	0	11	8	9	5
TCGCAGTAGAATACTT	ref_5830_new	50	119	55	51	132	56	126	62	135	69
GCAAGGGAGGTTCATG	ref_5830_new	27	41	29	32	34	14	44	19	37	21
TCCGTTGTCCTAAGTG	ref_5830_new	19	34	23	17	55	15	38	14	51	20
TTTGAACCCATCCACG	ref_5830_new	19	43	19	16	37	28	31	15	40	12
AGAAGTTGCCCGCATG	ref_5830_new	3	6	4	1	4	3	4	1	3	3
CCTTATCTCGGTCATC	ref_5830_new	0	0	0	0	0	0	0	0	0	0
ATGGTCTAATTTTTCA	ref_5830_new	9	23	19	18	15	24	32	11	18	11
ATAGTTGAAGGTTTTC	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CGGTTCTTCGAGGCCT	ref_5830_new	39	61	52	43	56	26	53	29	55	32
TCTACAGACCGGGAAT	ref_5830_new	26	59	34	30	57	23	61	21	53	16
TGTCGGATGGACAAAT	ref_5830_new	11	12	12	18	26	15	21	5	33	13
CGTCGCGAACTTCAAG	ref_5830_new	14	32	11	20	26	10	33	20	28	25
TGGGGGGTATGTCGTA	ref_5830_new	12	30	32	24	27	23	35	20	33	23
TAGGGGTTTGTCTGTC	ref_5830_new	40	89	61	48	74	50	82	49	114	41
CTGGCGGAGTCTCAAC	ref_5830_new	38	55	51	41	62	32	52	23	62	45
ATACACATCCTTTACT	ref_5830_new	42	69	32	38	63	28	68	37	71	30
CGAACTTTCAAAATTA	ref_5830_new	28	47	34	25	48	42	36	37	41	28
GGTCACCGAGCCGTTC	ref_5830_new	12	17	21	14	20	14	30	19	27	8
TTAGGATATTTACTAT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TTATAGCCAAGTTATT	ref_5830_new	33	82	39	41	72	33	75	25	82	33
TGCCTGGTGCATCGGG	ref_5830_new	40	83	61	55	89	37	108	63	100	35
TTTCCGATAGGGGAGA	ref_5830_new	9	26	11	11	23	7	24	12	12	10
CAATATGTCAGTTAAA	ref_5830_new	49	78	34	40	60	51	68	40	70	36
GGGGATTATAGGGCAA	ref_5830_new	6	10	6	8	10	12	9	6	11	4
CAAGCACTTGCCCGTG	ref_5830_new	7	9	5	2	9	2	12	4	8	7
TGTTTGCCAAGTACTC	ref_5830_new	19	26	13	9	26	11	29	9	33	16
TCGCTGGACTTCAACG	ref_5830_new	0	0	0	0	0	0	0	0	0	0
GTTCACTTATCAGGGC	ref_5830_new	55	71	65	60	77	58	82	55	73	46
TTACAACCCTGGTGGA	ref_5830_new	136	223	152	118	265	92	256	93	254	107
CCTTGAAGTAATCTGG	ref_5830_new	0	0	0	0	0	0	0	0	0	0
ATTGTCTGACATGCGT	ref_5830_new	15	29	15	20	19	9	37	10	37	16
GTCTCGGTCTATTGTA	ref_5830_new	1	5	0	0	3	0	7	1	6	1
TCAGGTTGTAAATTCT	ref_5830_new	14	25	20	28	32	14	29	10	33	17
TGTATGCTTGCGAACC	ref_5830_new	20	55	26	29	35	21	55	17	58	25
TCTGCCCAACGTTTGA	ref_5830_new	61	177	85	63	184	69	201	72	208	58
AAGACTACGATGGTTA	ref_5830_new	3	8	7	4	5	4	5	5	4	3
GTAAAACTGCCATGGC	alt_5830_new	2	1	0	0	2	1	0	0	2	3
AGCTCAACTCCCGGGT	ref_5830_new	4	3	4	1	7	1	5	0	8	2
TCCGATTTGTGGGGGT	ref_5830_new	15	26	28	11	29	14	26	14	24	8
CAGCACCGGGATAGAA	ref_5830_new	41	95	40	30	79	44	102	29	101	34
CTGCTCCGTAACAGAT	ref_5830_new	16	45	29	29	63	19	51	38	43	21
AAGCTTCCTTCTCACA	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TTCTTTAATGATGTTT	ref_5830_new	17	19	7	13	9	13	17	11	19	9
CCCGGGGCTACCCTAG	ref_5830_new	7	5	7	7	10	7	12	7	21	2
GCATTTTTCTCTGTTT	ref_5830_new	3	3	2	1	1	0	6	2	1	2
TATTAGATTCACTAGC	ref_5830_new	1	4	2	0	2	2	2	1	0	1
TTGTAAAGATTTGTGT	ref_5830_new	18	35	22	23	46	29	20	14	35	17
GTATGCATGCAACTCA	ref_5830_new	0	0	0	0	0	0	0	0	0	0
GTTCTGCTCGAAGATT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CAAATGTTCCAGGGCC	alt_5830_new	46	94	54	36	99	54	98	47	81	45
TCATTAAGTACCCCCC	ref_5830_new	25	77	35	29	59	26	54	22	66	29
GTGACGTATGTTGGTA	ref_5830_new	23	38	43	28	49	27	54	29	57	25
GTAGTCAACACTGTTG	ref_5830_new	1	8	11	0	4	5	8	1	12	7
CATTATGGACACTTAG	ref_5830_new	8	28	28	13	34	20	28	22	26	16
CCTGGGATGTTTATCT	ref_5830_new	47	81	55	37	69	20	60	36	81	27
GTGGATACGTGTCCGT	ref_5830_new	19	39	23	10	41	25	49	28	42	19
CTGCCGCGGATACGTC	ref_5830_new	18	35	14	14	45	12	59	28	50	11
TCTTCTCCCGTAGGTA	alt_5830_new	402	634	475	408	621	382	663	384	692	347
TTTGCACCTCTCCTTT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TGATACCAAGAATGGT	ref_5830_new	172	256	170	124	299	116	278	129	289	116
CTTTCTGTTGGTTTTA	ref_5830_new	96	138	119	117	155	111	169	80	144	92
GCCGCAGAAGTGCTTA	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CTCGGTCAGCTTGTTC	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CTTTATTTATATATAA	ref_5830_new	6	9	3	6	6	3	14	2	7	5
TACTATAGGTAAATAG	ref_5830_new	0	0	0	0	0	0	0	0	0	0
ATTTCTTCAGTTGTTT	ref_5830_new	57	94	60	54	98	59	101	71	77	47
CTCGATAGGCAAGTCG	ref_5830_new	20	44	31	26	54	19	53	19	44	25
GTATGTAGATGGGTAG	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TTATCTTAGAACAAGC	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TAACTATGGCATTTAT	ref_5830_new	42	63	72	55	63	38	62	42	65	47
AGCGATAATGTCGAGT	ref_5830_new	75	120	92	86	103	72	126	65	141	55
GTTACGACCTGTCATC	ref_5830_new	16	52	24	18	53	18	49	16	59	21
TTTAATCGCATTAAAC	ref_5830_new	4	12	14	12	8	5	14	8	14	13
AGATACCAAGAATGGT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
GGGGTTTCTTCGGTTG	ref_5830_new	4	11	9	5	11	7	5	4	13	3
CCGCTGGCTAAATGTT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CATGTACGGTCTGGTT	ref_5830_new	4	5	8	4	9	5	9	4	7	3
GCTGAAGATTGGTCTT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TTAAATTTTAAGCGGT	ref_5830_new	54	86	50	41	89	39	83	48	65	31
CACCCAGTAACCAGGT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TAATTAGGTTTATATG	ref_5830_new	13	14	7	9	10	6	14	5	16	4
CCTATTTCGCTAACTT	ref_5830_new	23	70	27	35	74	17	83	18	69	16
TCTTAGATAGTGTAAG	ref_5830_new	38	64	35	32	45	34	84	28	68	37
GTTAGAAACACATTGC	ref_5830_new	54	127	75	69	133	39	154	67	137	60
TACTTGTCATCAACTA	ref_5830_new	2	8	5	7	9	6	9	6	10	2
CATTGTCTTATGTGGA	ref_5830_new	8	25	18	7	19	7	35	11	21	6
ACCGTTTAGACCTAAG	ref_5830_new	29	66	36	35	50	28	66	38	49	31
TCTGTTCGGGTAGCGT	ref_5830_new	13	13	8	12	21	7	33	5	23	4
ATTTCTTTGGTTCATG	ref_5830_new	16	15	12	13	21	8	24	10	14	7
TGGACATCGGATATCT	ref_5830_new	17	27	27	14	31	33	41	10	50	18
CATATAGTTGAGTGGC	ref_5830_new	5	6	8	6	21	10	11	9	11	8
TATCGCTCATACAGAT	ref_5830_new	21	30	20	20	46	18	31	16	23	12
GTCGGTGCCTTTCTAT	ref_5830_new	13	23	17	14	19	13	23	10	23	6
TATGAAGTAGCGTTGG	ref_5830_new	3	1	3	5	5	4	3	3	4	3
AATAGTGCTCCCTGAC	ref_5830_new	7	19	8	7	11	9	13	4	14	11
TGCGGCTCCAGTGCCT	ref_5830_new	9	27	11	14	30	14	20	14	32	20
GAATTTGGTTGGTTAG	ref_5830_new	37	78	41	41	63	29	58	46	64	35
TCAGCCCCCGCGTCCC	ref_5830_new	44	159	53	57	181	25	184	27	163	37
ATATGCTTTGATATGT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
CTAATATACACATTAT	ref_5830_new	0	0	0	0	0	0	0	0	0	0
TTATTCCATCTCGTAC	alt_5830_new	200	337	222	216	318	173	344	184	348	188
ATATTCATTGTTTCCT	alt_222_upstream	25	30	45	28	35	33	34	34	38	37
GTTCGCCTTTGGGTTC	alt_222_upstream	11	18	22	20	26	11	14	12	15	15
ATACCTATCTCCTTTT	alt_222_upstream	7	27	13	14	17	14	12	14	27	14
TGGTGTTGAATATGTC	alt_222_upstream	18	21	22	15	19	11	21	4	28	15
CGCTTAGGCGTATGCC	alt_222_upstream	89	181	144	117	167	135	192	94	215	86
CAAGCCTAGCTCATCA	alt_222_upstream	0	0	0	0	1	0	0	0	0	0
CCCTTCCTCAAGGTCA	alt_222_upstream	6	9	8	7	15	5	16	3	18	10
GGTATTTTACCTGAAC	alt_222_upstream	28	44	40	37	52	33	43	23	58	16
ATTTGGATCATCGTTC	alt_222_upstream	115	132	144	105	154	108	166	112	167	105
AACTTGGATGGCTACT	alt_222_upstream	51	44	54	39	47	39	67	33	60	43
TCGTTAGGAGTCTGTT	alt_222_upstream	10	16	19	8	21	8	21	14	12	12
TTGGTGTCACGTTTCG	alt_222_upstream	133	212	186	150	160	144	215	132	212	129
GTACTCTGTATCGACA	alt_222_upstream	25	30	42	21	31	25	49	32	27	20
CTAAGATTATCTTCTT	alt_222_upstream	6	5	4	2	9	6	5	6	10	5
CCTAGTGGTCATTTTG	alt_222_upstream	40	50	42	59	72	42	70	44	57	33
ACTACTGTCCGGACCC	alt_222_upstream	7	9	7	10	9	3	8	5	7	5
TAACGACGGTACTGCC	alt_222_upstream	6	6	6	3	4	5	8	3	6	4
CGCCACCTAGCATGCA	alt_222_upstream	10	26	22	17	19	11	34	8	33	16
TAATTAATCCTTATGA	alt_222_upstream	10	14	13	8	5	11	15	5	16	12
TGCACTCGTAAGGTCG	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCAACTCTGCAAT	alt_222_upstream	137	250	151	144	260	95	269	111	289	130
TTTCATGCGGTGGGTT	alt_222_upstream	46	64	37	47	61	35	60	28	45	34
CGCGCATCTCTATTCA	alt_222_upstream	8	12	25	9	15	14	13	14	14	7
TTGAAGCTACAGCTGT	alt_222_upstream	18	21	23	17	21	21	31	23	26	24
CAAGCCTGGCTCATCA	alt_222_upstream	150	500	210	183	565	170	566	177	546	154
TCCCTCCTTAATCGTC	alt_222_upstream	8	7	6	5	7	2	2	2	5	5
GCACTTGGTTGTGTAG	alt_222_upstream	10	14	12	9	17	5	13	12	16	9
TCCCTGCGTAGACGGC	alt_222_upstream	6	8	4	3	2	3	7	0	18	4
ACCGCCATTATGCTTG	alt_222_upstream	5	9	7	3	8	11	7	6	4	5
TAACCCGTCAACATTT	alt_222_upstream	42	80	65	50	89	40	71	40	91	53
AGCCACTTGCAAGGTA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGAGCTATTAGGG	alt_222_upstream	2	18	16	6	8	6	8	9	9	2
AGTTCAAATGTTGGTC	alt_222_upstream	38	31	54	37	45	35	44	44	33	27
TACTTGGGTTGTCCTC	alt_222_upstream	3	9	4	7	14	4	9	9	4	2
ATAAGTTATACGACAT	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTAGTTGGACTTA	alt_222_upstream	78	130	114	119	128	97	121	69	117	82
GTCCGCCTATTGGTAA	alt_222_upstream	17	19	10	15	18	11	17	13	19	13
TAGATTCGGATGCACG	alt_222_upstream	80	113	104	96	103	71	120	88	127	74
ACTTTTTCCTTGGAAG	alt_222_upstream	24	27	16	21	27	17	22	4	27	15
CCCACCCACAGCATAA	alt_222_upstream	47	73	50	55	53	36	46	37	60	36
TCCTGAAGCTGAGATA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
TAGACAGACATTCCCA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCGCTGTGACCAC	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GACTACCTCTATGTCC	alt_222_upstream	28	42	56	30	35	32	51	45	38	25
CGTTGCGCCAGCAGCT	alt_222_upstream	60	74	55	73	66	57	70	51	93	44
GGAGAGGTTTCTTTAC	alt_222_upstream	33	31	34	26	36	31	34	30	49	24
TAAGATATTTCGCTCA	alt_222_upstream	11	5	6	4	5	7	6	8	7	7
CAACGACTGGTAAGTA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
AACTCGATTAGTGTTC	alt_222_upstream	0	2	6	5	5	5	2	4	1	9
GCTGTCACTCCTACCC	alt_222_upstream	13	24	14	12	27	15	23	9	20	3
GGTCTGATTAAGGTGC	alt_222_upstream	5	16	11	9	16	8	11	7	12	3
GTCGGGTCCCCTGAGA	alt_222_upstream	56	100	67	43	103	49	86	45	123	41
CCATTGCAAGTAAAAA	alt_222_upstream	3	4	4	6	3	4	2	5	3	1
GTTTCCAGCCGGAACG	alt_222_upstream	68	61	73	65	73	46	81	60	94	58
GCTGAGCGTGTATCAG	alt_222_upstream	55	83	60	65	67	64	74	62	91	55
GAGCGGTGATGCAAGG	alt_222_upstream	92	109	120	96	115	97	134	76	111	78
GATGGCAGGACGGCTG	alt_222_upstream	8	12	11	12	10	10	14	9	16	4
TCACGCCTCCACGAGT	alt_222_upstream	8	18	12	9	23	10	11	10	16	13
CTCTGTCTAATTGTAT	alt_222_upstream	37	17	44	53	34	32	36	26	28	23
GAAGTTATACGTTTAC	alt_222_upstream	24	39	26	25	40	16	29	22	26	10
GGTAGCATGGAGCCCA	alt_222_upstream	166	216	207	192	199	184	202	146	219	195
GAGCACTGCTTGTTCG	alt_222_upstream	27	28	27	17	22	13	34	14	26	16
ATCACTACAACCTAGT	alt_222_upstream	2	4	1	0	4	3	1	3	0	1
TTCCCTGGCATGTGGT	alt_222_upstream	8	7	2	12	11	4	7	5	9	4
GCCTGGCTTCACTACG	alt_222_upstream	65	117	83	79	104	77	124	69	119	72
GTGTTGGTGTTCGTAA	alt_222_upstream	9	16	26	16	12	11	30	14	18	11
TTATCGGGGTCCTGGC	alt_222_upstream	24	26	36	25	30	14	33	23	32	21
CACTGGATTGCGGATA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GAGGCCGTCCTGTTTG	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGTGCCCTACTTA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTATCGGCGATGC	alt_222_upstream	20	17	21	15	15	11	18	21	23	16
CGGTCAACGATACCCG	alt_222_upstream	64	49	53	39	46	41	57	36	56	40
CTCCAAAAGATAAATG	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
AACACTATATGTCGTA	alt_222_upstream	68	93	88	80	103	78	127	72	93	90
CCGGCTCGAGGGCTTG	alt_222_upstream	25	30	30	26	36	26	41	20	29	21
AGTCAGTTACAGTGAC	alt_222_upstream	21	44	29	28	48	14	43	17	33	28
CCTGTTTAATTCTATA	alt_222_upstream	68	93	85	69	106	64	102	80	99	69
TTGCTCACTGTTACTA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
AGCATAGGGGCCTGAT	alt_222_upstream	15	24	27	22	24	14	33	12	28	12
ACCCCACCTTATAGAA	alt_222_upstream	33	55	43	40	71	32	53	35	56	29
TCTCTGGCTCTGATTT	alt_222_upstream	35	43	45	50	58	35	54	37	41	39
CCCTGCACATACTTCT	alt_222_upstream	57	58	66	64	70	66	73	44	71	43
TTCTCCTTTATTGTTA	alt_222_upstream	55	58	49	45	38	41	55	28	52	43
AATGGCCCTTCATCAT	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
TATTCGCCAGTCCGAA	alt_222_upstream	53	78	62	73	84	48	76	42	76	48
GAAGTAAACCCATTTT	alt_222_upstream	66	72	81	69	66	69	51	49	86	44
CGGCAATTACCTGTAA	alt_222_upstream	1	2	0	2	0	1	0	0	2	0
ATTGGCATTTTGTGCA	alt_222_upstream	8	18	14	17	28	19	25	7	21	13
TGATGGTCCGCAGGAC	alt_222_upstream	23	21	25	20	21	17	24	16	27	13
CTGGGTTAATAACCAT	alt_222_upstream	41	29	29	33	32	26	21	23	42	22
CATCGGTGCGTCTAGA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCGTTCACTCGTA	alt_222_upstream	15	7	10	12	13	2	20	6	13	5
TTAAGTCCTTTTCTTC	alt_222_upstream	28	18	19	12	13	10	14	13	13	14
CGTTGGAAATACCCTG	alt_222_upstream	130	142	140	127	132	132	145	110	167	102
CCCTCACGTAGATTCC	alt_222_upstream	19	32	27	31	46	28	44	22	36	27
AGCCTGCCGTTGCGGC	alt_222_upstream	22	17	21	22	30	21	30	11	33	18
AGGACAGCTACTCACA	alt_222_upstream	14	20	14	17	16	9	22	14	29	19
GCATCTTAGCTGACAA	alt_222_upstream	4	1	0	1	1	3	4	2	5	2
CTGAAGGCAGATATGT	alt_222_upstream	16	20	17	24	14	23	28	15	14	9
CGTTCAAATTGTTTGG	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
GTCCCTCGTCTTATTA	alt_222_upstream	9	15	12	13	10	9	17	5	16	9
CAATCTTCTGTCTTAA	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCTATTTTCGTAG	alt_222_upstream	2	6	2	4	0	3	3	3	3	3
GTTTGGGGTACACACT	alt_222_upstream	268	330	290	272	312	265	323	223	361	229
CATCTCATGGTTCACT	alt_222_upstream	6	3	1	5	8	6	18	8	7	12
ACTCACCACCTAGAAA	alt_222_upstream	15	16	16	6	11	3	26	6	14	6
TTGTTGATTGATGATG	alt_222_upstream	4	2	10	7	3	10	16	4	9	7
GTGCTCCATCTAGAAC	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCATATGGTGCGG	alt_222_upstream	53	61	51	38	35	42	51	43	45	36
ATTGGTACCACTTTTC	alt_222_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGCGCACCAGACA	alt_222_upstream	22	37	30	30	39	23	43	18	49	9
GCACACCCATGCATGA	alt_222_upstream	11	9	16	15	28	11	27	14	13	22
TCACTGGGGATGACAT	ref_790_fdr	44	72	66	47	55	41	51	53	59	50
CAATTAGCAAACTTTG	ref_790_fdr	76	74	110	101	79	72	84	72	106	84
CCATGCCATTGAGTCT	ref_790_fdr	37	54	42	26	57	22	65	33	81	17
AAACATACCCGGCTGT	ref_790_fdr	90	70	85	79	69	73	71	58	95	89
CAGGACTGTTCCCCTG	ref_790_fdr	65	70	66	84	76	65	82	61	70	56
TTACGTGCTCCGTCCA	ref_790_fdr	99	64	133	106	66	76	89	87	65	97
GCTCTCGATTAGAGCG	ref_790_fdr	25	23	18	23	14	23	20	24	20	14
TTTTACATTGCTCGGT	alt_790_fdr	20	48	22	24	48	16	36	19	54	21
ATAGTAACCATAATTA	ref_790_fdr	197	196	238	206	191	189	213	193	198	173
CCTCCAGTAATCCTTC	ref_790_fdr	29	25	34	30	23	22	33	24	27	22
TTGACTCTGGAATGTG	ref_790_fdr	72	62	100	91	68	59	88	75	57	64
GGTTTTGGTAGATGCT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
CTACGCTAGTTTGTCT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
ACGCGGAATCCAGTCT	alt_790_fdr	17	10	16	18	12	15	11	18	22	15
CGCAGTGACAAAATGA	ref_790_fdr	21	15	30	16	15	10	17	13	19	21
GGCGTCTTTAGTTTTC	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGCATCGACAACC	ref_790_fdr	34	36	38	40	36	43	51	36	47	36
GGACGCTTTTGCGCAT	ref_790_fdr	20	9	16	19	11	15	14	13	21	17
TCTAACTTAGTTAGCG	ref_790_fdr	13	13	13	11	13	7	8	6	14	8
ATTTCCCCTTAACTTT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
AGTCAATCGGCGTCCA	ref_790_fdr	152	129	197	168	153	166	131	149	134	144
GAATAGCATCTGGTTG	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTAACTTTTTGTA	ref_790_fdr	8	9	18	14	15	13	10	12	11	17
GGGGGCGTGATTCGCG	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTCCCGGGGGTTA	ref_790_fdr	75	86	110	74	88	54	93	66	82	71
GTCTCTAAGTCGAATT	ref_790_fdr	47	77	67	39	45	56	53	50	55	51
ACTGATCGTAGGGCCG	ref_790_fdr	30	17	31	30	19	22	18	21	17	21
GTTTGCGTTAGCACTC	ref_790_fdr	23	16	23	17	19	11	19	10	23	24
AGTACGTTCATTAGCC	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
TAAATCACGCTCAACA	ref_790_fdr	176	129	189	169	125	152	144	143	120	141
CGGTTTCACTCGGTGC	ref_790_fdr	76	60	94	66	41	89	60	65	49	67
TTTTAGGGTACTTGCC	ref_790_fdr	35	53	31	40	53	19	37	27	53	19
TTCATGTAGCTTGCTA	ref_790_fdr	42	53	65	69	58	27	60	49	47	44
TTGGTTTTTGTGGGCG	ref_790_fdr	9	9	12	13	14	15	20	15	20	22
ACCTGAGGATTAGTCG	ref_790_fdr	13	11	10	9	7	6	6	7	19	8
ATTGGTCAAATCTCGT	ref_790_fdr	16	22	15	21	12	17	12	12	11	10
TAGGCAACTCTGTACT	ref_790_fdr	13	11	14	12	11	19	8	10	6	6
CAATCCTTGTTCGGTC	ref_790_fdr	36	26	49	42	42	40	45	40	22	33
TGCCGGAAAGAGTATC	ref_790_fdr	29	33	20	22	27	18	31	13	29	22
GTTTTCGGGTTCATTT	alt_790_fdr	282	435	319	318	522	253	498	294	498	270
AGTTCCACTATTCGCA	alt_790_fdr	35	29	25	44	28	33	23	33	37	30
CACGTTTTACGGTACT	ref_790_fdr	87	88	156	90	74	95	88	95	100	91
CTAGGATCTCCAGCTA	ref_790_fdr	60	86	77	73	56	52	63	72	68	70
TATCCCCTGGCTCTAT	ref_790_fdr	9	8	7	4	9	5	4	4	5	8
GGGCTTCCACTCCTTT	ref_790_fdr	69	72	98	91	64	75	71	58	59	69
GTGGTTATAGCGACTA	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
AATCAGCAAAAGCCCT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
CAAGTCATGTACGGAT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
AACCAGGGGTGATGGG	ref_790_fdr	57	43	78	70	62	59	70	56	64	47
TTGTCCATATACACAA	ref_790_fdr	3	0	0	1	3	1	1	1	0	1
ATCTGTTCCGCCGTTT	ref_790_fdr	13	15	15	18	17	15	14	16	12	24
CCTAAACCGATCTTTG	ref_790_fdr	84	112	113	91	120	86	156	86	133	73
CTTGGGCCAAGACTGC	ref_790_fdr	250	214	320	262	236	268	243	220	286	202
GATGAGTCGCCACGTC	ref_790_fdr	34	33	40	51	29	29	32	27	31	34
ACGTGGCGTTATGCGC	ref_790_fdr	80	59	79	67	53	70	58	66	57	67
TTGGCACGGCTCTGTA	ref_790_fdr	63	60	91	84	68	68	55	63	55	49
TTATAAGTCTTAAAGG	ref_790_fdr	95	116	133	131	93	84	102	88	94	103
TGGCGTCGCGTCGTGC	ref_790_fdr	172	175	177	173	154	149	163	160	176	127
TGGATGTTACCGAATC	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
CAACTTACCGTACTAT	ref_790_fdr	15	70	31	23	74	15	74	9	62	17
CTTCATAGACAACGTG	ref_790_fdr	4	1	4	5	4	3	4	2	4	4
TAGTTAAGAGATTATA	ref_790_fdr	23	12	24	18	20	13	15	13	12	12
ACTTTAATGGCCGTAC	ref_790_fdr	36	26	46	53	46	33	56	49	52	35
GACCAACGTGCGGTGC	ref_790_fdr	12	8	12	8	10	5	12	10	3	7
ATGAAAGTTCCTGGTT	ref_790_fdr	36	43	48	44	32	36	35	43	38	33
AGCCCCTCTTGTCACT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGCCCTCCGTCAG	ref_790_fdr	14	7	14	13	8	11	17	12	7	9
CGCGCTGCAGTGCTGC	ref_790_fdr	43	26	55	49	29	52	33	41	32	39
CCGCTTTGCCAGTCTG	ref_790_fdr	37	42	29	36	44	34	40	28	38	42
GATAGTTTCCTCCGAA	ref_790_fdr	33	35	28	45	28	39	23	31	27	28
CGACGATCGTGAAGTT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
TAAATGACGGTACCAA	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCTTACCGCACCG	ref_790_fdr	67	74	97	88	109	73	95	81	92	75
CGTTGGCCACACCGCT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
AACCTTTATCGGTTTC	ref_790_fdr	53	43	60	47	35	38	47	59	42	49
ATCTGTTGTAGTAAAT	ref_790_fdr	89	81	88	107	103	92	86	89	80	63
CAGGTGTAACAATTGG	ref_790_fdr	29	28	34	21	21	12	16	14	27	34
TCGAAGAATCTAGTTT	ref_790_fdr	92	76	118	91	91	90	98	83	71	68
TATACCAAGCAAGAGG	ref_790_fdr	5	11	11	9	8	5	4	7	8	6
CTGTCTACTGGTCATA	ref_790_fdr	19	24	27	28	20	32	23	28	20	23
GTGTTCCTAATTGGAC	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCTTCTGCGTATT	ref_790_fdr	26	22	22	22	26	23	15	16	17	21
CTGCTGCGGTCTGTGC	ref_790_fdr	42	27	54	34	40	37	31	45	50	24
CTAGTATCAGCAGAAG	ref_790_fdr	1	2	2	1	0	3	0	3	0	2
TACTCATCTGCTGAGG	ref_790_fdr	44	32	50	52	36	42	36	30	26	24
TTTAGAGTTAGATTTG	ref_790_fdr	79	76	86	78	79	65	89	84	98	95
GCGCATTCTGTGCTGA	ref_790_fdr	4	8	1	4	2	3	3	3	2	2
ATTATGGTCTTTTCCG	ref_790_fdr	60	68	84	84	57	64	67	67	74	76
TGCGTTCCGGGGAGAA	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
AAATACTGAATTAATC	ref_790_fdr	88	77	117	78	69	51	70	81	68	62
ATTCCGTCTTCTCAAG	ref_790_fdr	79	83	105	95	99	78	99	88	106	78
ACTACGAACTAGGAAG	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
TGCGAGTTACAGTTAA	ref_790_fdr	12	14	26	13	15	16	13	14	20	16
AGCTTCACTCTGGAAA	ref_790_fdr	2	1	4	0	1	1	0	0	1	0
GTTTACTGAGTCTGGT	ref_790_fdr	35	22	43	27	26	31	27	26	35	35
CACGTCGTGTAAATAT	ref_790_fdr	16	14	15	19	11	13	13	7	20	12
ACTTCCTTTAGGACCC	ref_790_fdr	4	11	5	2	5	1	11	3	2	0
TTTGCGTCCCGGAGCG	ref_790_fdr	4	1	4	3	0	1	0	1	0	0
TAATTGATATGAAATT	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
GACACCATGCAGGTTG	ref_790_fdr	0	0	0	0	0	0	0	0	0	0
TGGATACGTCCGTTTT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GACCAATTAACTTGAC	alt_6104_new	23	36	15	9	41	23	50	11	35	13
AGTGGATTTCAGAATA	alt_6104_new	61	110	51	52	118	46	105	48	116	49
CTTGTATCTGGTAATA	alt_6104_new	15	30	26	17	50	20	42	16	37	24
TGCTTAACCGGTGTTT	alt_6104_new	18	62	28	23	61	19	58	10	55	16
CCTGACTCTACAGCTA	alt_6104_new	6	28	6	7	44	13	40	6	30	8
CAGCAAGGCAATGTCT	alt_6104_new	3	9	7	6	9	2	8	2	5	1
CACTGCTTCTCGTATC	alt_6104_new	4	5	2	4	9	5	10	3	4	7
ACATGCGCATAGCGGG	alt_6104_new	18	49	28	15	45	22	38	19	61	30
GGAAATGCAGATATGG	alt_6104_new	56	77	56	44	73	40	79	53	87	40
GGATACATGCCCGTGT	alt_6104_new	4	5	4	5	2	2	7	2	4	5
GCGATAGGTCTTCGCT	alt_6104_new	49	94	55	53	85	41	96	44	121	41
GACAGTCATTCCATTC	alt_6104_new	22	55	21	17	65	12	62	25	64	14
ATTCGCGAGTGAAGGG	alt_6104_new	4	6	4	1	6	1	7	4	6	1
AGTTAAGTAACTTGAC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GGCTCGAAAGGCCGGC	ref_6104_new	206	400	261	236	436	212	449	193	441	200
TATCCATTTGCTCTGG	alt_6104_new	2	17	9	7	18	3	21	4	18	5
TCGATCGCACACGGGA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CGAATCTCAAGGCAGA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
AAGGTTAGCTCGCCGG	alt_6104_new	27	57	32	28	61	26	59	21	58	24
ACGGAGGTCCACGCGA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGGCTCTGTAAGACAG	alt_6104_new	10	9	6	5	14	2	4	5	12	10
CTAAATTCTCCCTCTA	alt_6104_new	8	20	10	10	26	6	36	14	11	7
GCCTTTGTCGGTATTG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGTGATCTCGTCACGG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TTATCTCGGTGGTCTT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TATCGTATTTTACAGT	alt_6104_new	21	78	33	33	76	27	74	19	55	25
CGCGCCTCGGAGGTTA	alt_6104_new	5	5	6	4	12	4	13	6	9	1
AGGCAGCATTCTTGGT	alt_6104_new	40	81	37	37	66	32	68	25	98	23
CTGCAGGCTCGTTTTT	alt_6104_new	2	0	0	0	1	0	1	0	1	0
GTGCGGGAGCGAGTGG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GTCGCACCGGTGTTCT	alt_6104_new	1	0	0	0	1	0	0	0	0	0
ACACCTATTCTATAAC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CATGGAGTGGTTTGGG	alt_6104_new	18	25	12	12	26	15	30	10	36	13
CAAGGTCTGGTATATA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CCTGCTCTGGCTATGC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CCCCGTATCCGTAATC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
ATCCCGAGATCCCTTG	alt_6104_new	15	26	14	16	21	18	32	10	22	10
GTTGTATTCTTGATCT	alt_6104_new	9	19	17	10	17	11	23	9	29	23
CTTGTTGGTCCACTTC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CTGTCCATATTGATGC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GGCGAAGGGACACGCC	alt_6104_new	1	8	3	4	8	4	12	3	8	3
TCATTAGCAGAAATTC	alt_6104_new	9	24	12	9	26	7	21	10	20	8
GAACCCAGTGCCCTTA	alt_6104_new	0	1	0	3	0	0	0	0	0	0
ATCCCTGGCTTGTTAC	alt_6104_new	13	25	21	12	22	6	12	8	24	7
GCAATCGGAACTCGTA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
AGCCAGGTTAGCCCTT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGGACTAGCGGGTTCT	alt_6104_new	4	11	9	11	12	14	16	6	16	14
CAGAAGTAATTCCACG	alt_6104_new	11	17	1	5	16	12	19	10	18	9
GCAGTGGCGGATTTCA	alt_6104_new	17	15	9	5	18	13	17	5	25	9
TTATTGTACTTTGATT	ref_6104_new	36	90	51	29	75	41	101	37	104	34
CGGTTTTGACATCTCA	alt_6104_new	7	9	7	6	7	5	13	8	16	4
AAACTCACGACAGGCC	alt_6104_new	1	3	4	2	1	4	7	2	4	0
GTAAGATGGTGAATCG	alt_6104_new	24	33	21	27	42	15	40	24	49	13
AAAAAGAGTTCACCGG	alt_6104_new	29	43	25	23	39	26	49	21	46	13
CCGGCCCAGGATCCTC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CTACCGACTTTTCGGG	alt_6104_new	6	30	8	5	20	10	22	6	31	10
TCTTGCGCCGCTGTCC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGATACAGGTGCAACC	alt_6104_new	7	15	7	8	13	6	13	2	28	5
ACTATGGTGTAAGCAA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CGATCACATACCGTAG	alt_6104_new	27	24	29	30	43	19	40	19	43	19
GCCCCGTTTGTATATC	alt_6104_new	0	4	1	1	5	0	5	0	2	0
TCGTTTTAGTCTTTTG	alt_6104_new	14	40	10	12	30	10	47	10	25	10
ACAGCACGCGGGGTTT	alt_6104_new	7	52	18	11	42	8	40	10	52	11
AGGATAGACGGAAATT	alt_6104_new	103	251	131	131	223	106	268	128	251	91
TTCGCTGGCCAACGCC	ref_6104_new	1	10	8	7	17	2	31	2	19	2
TTTGTTTTCATAGGCG	alt_6104_new	2	2	1	1	2	0	2	1	0	2
GTTGCTCCTCTAATGA	alt_6104_new	6	14	9	7	18	11	18	8	19	6
GTGCCTCTTCTTTACG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
ACGCCACACAGCAATC	alt_6104_new	11	24	12	11	27	8	30	11	31	15
TACTTCAACGGTTCCT	alt_6104_new	25	67	22	35	65	25	54	22	70	32
TCAGAAACCGCTTACC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CTCTCTCTTCTGCAGG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CATAGTGCTCGCTCAC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CGGAAGACTGATGTGG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGAAACTATCATTGCC	alt_6104_new	3	13	8	5	12	11	10	2	13	8
CACTCGGAAAAACCAA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GCCTCGGTATCGTTGT	alt_6104_new	2	5	3	1	4	0	8	2	12	2
CATAGTTATTGGCGCT	alt_6104_new	3	14	6	7	14	6	6	1	11	5
GTTAGAGCGAGTATCG	alt_6104_new	61	113	76	49	103	47	105	48	114	52
TCCTTAAGCCCAACGC	alt_6104_new	27	78	50	35	97	36	106	45	96	34
TAGCCTGCGATAGCGA	alt_6104_new	8	24	4	7	15	4	21	5	19	2
ATTGCCTGGAGATCAA	alt_6104_new	22	41	22	18	38	15	51	23	39	22
GGTAGACGGCCCTTCA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TATTTGCTTGTGCTTA	ref_6104_new	3	11	3	3	8	8	6	4	7	2
GATCCGGCAGTGCTCG	alt_6104_new	21	37	22	19	38	16	38	22	39	11
AACTCTCCGTGAAGTG	alt_6104_new	7	10	10	3	13	9	9	0	18	6
TGTACAGAATTGTTCA	alt_6104_new	14	29	15	8	11	9	25	15	20	13
ATGCATAGTGTTAGGA	alt_6104_new	8	8	3	9	8	3	7	2	20	8
CAAATTGGGTACACGT	ref_6104_new	45	103	55	57	107	48	115	48	133	44
CCGGCCCAGGCCGGCA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GCGAGTGGTGGTCACA	alt_6104_new	5	20	11	8	23	3	20	9	26	6
ACTCTTCGCGCGTGAA	alt_6104_new	23	30	25	11	26	25	44	11	35	20
CGAATTGAAGCATCAT	alt_6104_new	36	74	53	22	72	28	63	25	69	26
GAAACGCTCTGTGGTT	alt_6104_new	31	62	38	30	71	30	58	30	82	26
CACTCGCTTCGTGCGA	alt_6104_new	3	36	4	5	22	11	38	4	24	6
GTCAACTTCGGAGTAG	alt_6104_new	22	45	12	27	54	16	44	17	33	19
ACACCTTTTCTATAAC	alt_6104_new	59	180	77	78	163	57	173	46	167	64
TCTTTGATATGCTCGC	alt_6104_new	2	6	1	1	1	0	3	0	3	1
TCCATTTCTTCGTCTT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TATGCGGGCGTTCGTA	alt_6104_new	18	36	18	21	29	13	44	21	42	11
ACGAAGCAGAGTATTG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CTGTTCAATAATAAAT	alt_6104_new	1	0	2	0	3	1	2	0	2	0
CGCACATTAGTTGCAA	ref_6104_new	43	98	53	50	102	39	104	40	111	34
GTTGGTGAGATAAGTG	alt_6104_new	18	37	29	25	45	21	46	23	54	30
CTAAGTCCTGAAAAAC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TTGAAGTCATCTAATT	ref_6104_new	11	30	16	12	18	16	27	18	21	15
ATTATTCAGACGGTTG	alt_6104_new	5	9	6	4	7	4	12	2	7	7
AATTACATCTCACTGG	alt_6104_new	28	53	30	25	73	33	68	28	64	21
AGGCAAATGGTGAAAA	alt_6104_new	2	6	4	3	6	2	10	3	6	4
TCCATATTCTTCTTAA	alt_6104_new	5	5	4	2	3	3	6	5	4	4
CTCGGCAGATGTGGCT	alt_6104_new	15	37	32	19	26	16	44	13	44	15
AGGCTTTGTCGCGTGA	alt_6104_new	16	29	18	10	37	18	36	13	27	12
CGGGTTTAAGCCGCCG	alt_6104_new	6	13	3	4	16	3	10	2	9	5
GATAAGTTTTCTGAAG	alt_6104_new	60	108	55	54	99	33	127	43	107	49
GCATTTACATGCTACG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GTAATCCCGTACTGTT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
ACGTGCATTCGCTATC	alt_6104_new	9	10	9	15	15	5	15	8	16	8
ATGATCACATGTATGC	alt_6104_new	20	43	31	23	42	25	40	21	60	23
TACTTTGGTGTGCCTC	alt_6104_new	26	39	27	22	72	31	49	30	63	24
CAAATTGGGAACACGT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GACCATGTAGCTCGTC	alt_6104_new	1	4	1	0	2	2	5	0	4	0
CTCACTCGAACCTAGA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CGTCTATCTAGGTGTA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GCCTTTGTCGGTCAGG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GCTTGATGTAAGGACT	alt_6104_new	6	22	4	2	11	1	10	6	9	6
AGGGTGGCTTTTTAAT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CGATGAGTTTTCCGGA	alt_6104_new	14	7	6	8	27	8	20	15	27	6
ATTGGCTTGGCGTGTG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGATTTAGTTCATTGG	alt_6104_new	10	23	19	10	24	11	26	5	27	6
GGGTGAAACCATTTTT	alt_6104_new	20	41	25	17	30	14	36	12	36	11
ATATGTCTTAAAGCCT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TTCATGAAACTTCGAC	alt_6104_new	16	52	19	21	40	18	37	16	49	25
ATCCTGCTACGCGGGT	alt_6104_new	2	4	1	0	1	2	2	0	7	1
TCGGGCTTTCCGGCCC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TAGTCCTGCCCATTTG	alt_6104_new	8	22	7	13	19	10	27	5	28	10
ATTGGTCCGGTGTAGA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
ATGGGTGAGTTTGGGC	alt_6104_new	19	36	13	11	29	22	40	8	28	7
TGGGTGAAATAACGCT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
AGGTTGAGTTGAATTT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GAACGCACGCTGGGTT	alt_6104_new	6	30	6	9	22	6	18	15	21	9
CACTGTCTTCCGGTCG	alt_6104_new	3	7	5	1	16	9	10	5	29	5
ACTCGCCTCTTGTCAA	alt_6104_new	10	27	8	7	19	10	23	11	19	12
GACCGAAAATTTCTCA	alt_6104_new	18	25	16	16	29	13	18	10	27	7
TAAACGTTACCATGAG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GTTTACCCACCACCGC	alt_6104_new	3	8	6	3	6	0	10	2	7	3
TACTTCTTCGTACCTG	alt_6104_new	5	21	4	6	20	3	21	7	19	2
CTCGTTAAACGTTACG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGGATGGAGTACCCGT	alt_6104_new	4	15	8	7	18	7	13	8	17	6
TCCCCGTAAGGTTCAT	alt_6104_new	1	35	0	0	35	5	42	0	28	0
GATAAGTTAGATGTGC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGACTTGGGCTGTTCC	ref_6104_new	7	14	12	8	18	10	23	14	12	12
ACGTATAGGAGATATC	alt_6104_new	24	70	26	34	38	30	56	24	56	29
ATCTCGGTTTGTGCAT	alt_6104_new	21	43	33	22	38	26	63	17	53	9
CAGGTGTACCAGCGCC	alt_6104_new	16	30	13	21	38	18	34	10	27	13
CACGTTGTCACTTGGC	alt_6104_new	27	47	22	23	50	19	43	27	67	24
TCCCGGAGGAGTAGGT	alt_6104_new	8	5	6	5	9	3	14	5	10	1
CATATTAACAATGTTG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
ATAGGCTTTACTTCAC	alt_6104_new	29	51	34	27	76	29	60	24	80	27
TAGTAAGCGAAATTCC	alt_6104_new	41	70	36	34	65	36	60	29	91	34
TTCAATTGTTATCTGC	alt_6104_new	12	23	12	9	32	18	23	19	46	14
ATGGATATTTATTTTG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CTTTACCGTTGGTCGG	alt_6104_new	5	12	14	4	27	4	15	5	16	2
TGGTTGCAAAGAGAGT	alt_6104_new	0	4	3	1	7	2	1	2	4	2
TGATGCCTAATTGCAA	alt_6104_new	35	49	35	30	58	15	69	27	74	13
CTTAGATGCTCCGTCC	alt_6104_new	6	10	12	2	10	2	9	6	9	0
AGGTTGTTTATTTAGA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TTGGCCGTCGTCAGGG	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GATGCACATCTTATAC	alt_6104_new	10	13	11	10	8	9	18	14	22	14
ACTTCATCTAGAGTGC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GACTCTACTTTTCCCT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TGAATGCTGTCGTCAT	alt_6104_new	14	47	27	27	56	20	56	24	55	28
TTTGGTCGTGTGGGGA	alt_6104_new	41	119	73	50	112	48	129	44	132	52
TTTTAATACTTATTTT	alt_6104_new	3	3	2	2	4	2	5	3	7	1
CAGATGATAGACCCGT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CGGAAATCAATCCTAC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TTTATTCGCAGCTGGT	alt_6104_new	109	275	121	111	273	122	234	103	240	94
AACGTGTTTCAGGAGG	alt_6104_new	39	78	42	24	63	32	83	20	96	37
CACATCAGATCAAGCC	alt_6104_new	60	121	47	41	124	61	115	44	99	52
CGTGCTCAAATATTCT	alt_6104_new	3	9	0	8	3	5	4	2	4	1
GGCCTTGCCTTTTCGT	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CGCGGAGCTATGAAAC	alt_6104_new	10	28	22	12	39	21	52	12	44	21
CTCGGAACCATCCTAA	alt_6104_new	1	5	2	1	4	0	2	1	2	2
TCCAAGCAGACCAACT	alt_6104_new	25	27	18	10	24	11	28	13	44	7
TGGGCCCCTAGTCGCA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GTGACCTGTGTCACTC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
GGATGTAAGAGCTTAA	alt_6104_new	13	31	11	18	29	21	29	12	42	19
TAGACAGACATTCCCC	alt_6104_new	17	58	12	15	28	11	44	7	43	5
GTGTGAGTTCGGGGTA	alt_6104_new	0	0	0	0	0	0	0	0	0	0
TCGTCTAGTCCAATTC	alt_6104_new	0	0	0	0	0	0	0	0	0	0
CACTCGGGAAAAGAAT	ref_5906_new	8	19	7	6	14	7	7	8	16	5
ATGTTCATTGAGTAAT	ref_5906_new	21	58	25	16	53	18	47	17	54	23
GCAGCGATAAATGCAT	ref_5906_new	4	7	4	2	10	7	12	8	11	6
TCCATCAGGCGCGGTT	ref_5906_new	26	44	33	30	50	21	39	19	47	19
TTCTGTTAATTTGCTG	ref_5906_new	0	0	0	0	0	0	0	0	0	0
CTGAGAGTCGCTGTGA	ref_5906_new	0	0	0	0	0	0	0	0	0	0
AATGAGATTGGTGGCG	ref_5906_new	10	10	6	8	8	9	19	7	10	1
GGTAACTGATCCGCGC	ref_5906_new	28	27	22	26	48	12	34	21	43	16
AACAGGGATTGTTTAG	ref_5906_new	43	92	50	41	70	47	84	41	85	24
CCCTGTCTTTATTTCT	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TCCCCACAAGTGCACG	ref_5906_new	3	17	4	0	27	2	20	4	41	0
TTAGCAAATTTCCTAC	ref_5906_new	19	50	40	23	62	24	55	14	48	24
AATCTGGATATCGCAT	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GTATCGGGGAGTAAAC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
ATCCTTTCTAACTGAT	ref_5906_new	13	36	9	18	35	7	31	19	34	14
TAGATATTATACGAAA	ref_5906_new	7	14	11	7	15	5	18	7	19	9
CCCCACATTCCGCTTT	ref_5906_new	39	124	62	54	129	43	140	46	150	41
CCGTTTATTTCTTAAT	ref_5906_new	11	25	17	13	44	9	46	7	26	12
ACTCTTTGCCATCACA	alt_5906_new	19	52	24	30	58	30	69	15	68	20
GTGATTTACAGGTTTC	ref_5906_new	3	5	0	3	2	3	7	1	2	1
AGTGGGTAAATTCATA	ref_5906_new	0	0	0	0	0	0	0	0	0	0
CGAACCCTCCTCTGTC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GATAACAGTTAAATAT	ref_5906_new	6	14	7	2	11	9	10	5	10	6
TAAAGGCCTACACGTT	ref_5906_new	0	0	0	0	0	0	0	0	1	0
GATGCTTAGGAATGGT	ref_5906_new	3	8	6	4	9	2	6	4	5	4
ATTTGTCCTACCCCAT	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GGCTGTTTCGTTTTTC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TTAATCATTATGGTTT	ref_5906_new	15	30	11	12	29	10	29	16	30	14
GCAGGCGCGGGCTGGA	ref_5906_new	4	5	3	3	3	5	20	6	5	4
AGGTTTCTGACACCGG	ref_5906_new	0	6	0	0	7	2	8	3	7	0
CTGTCTCTCGTTTTCA	ref_5906_new	0	0	0	0	0	0	0	0	0	0
AACACCGCCTGGAGAG	ref_5906_new	0	5	2	1	5	2	2	1	2	1
TACGTATATTGTAATT	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TTGTTCATAAAAGTCA	ref_5906_new	2	12	4	4	5	5	6	4	19	4
TTTAAGTGAAGGTGTT	ref_5906_new	0	0	0	0	0	0	0	0	0	0
AGAAGAGAGTACATTT	ref_5906_new	19	39	26	19	39	10	43	15	31	16
ACCGAGTGGACAACGA	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TATTTTGGTCAAAAAT	ref_5906_new	0	0	0	0	0	0	0	0	0	0
CATAGTCTGTCGTGGA	ref_5906_new	80	180	102	90	176	95	222	86	205	78
TTCCTGAGGCACGTGT	ref_5906_new	3	3	2	0	6	2	7	3	8	4
ATGGATCTATCAAACA	ref_5906_new	8	17	2	6	15	7	12	9	21	5
TACGCCTATCTGAGGG	ref_5906_new	3	5	3	6	6	4	10	2	12	4
TTCAAGGCGTTTAGGA	ref_5906_new	10	11	4	8	16	7	8	5	13	3
CCGTTGTGATGATACA	ref_5906_new	28	39	20	22	54	14	37	21	51	22
ATTGGCGTCAAGGAAC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GCGGAGTACATCGAAC	ref_5906_new	13	26	22	14	31	13	30	10	40	18
GCGACAACCGTGTTGC	ref_5906_new	0	2	0	1	0	1	1	0	1	2
GATACTGGACATGGTT	ref_5906_new	13	22	12	13	32	10	15	6	28	8
GGTGGCTCAAGTTGGG	ref_5906_new	7	15	5	3	10	9	6	7	13	5
TGGAATCGACACCCCC	ref_5906_new	17	30	22	10	39	12	16	10	33	10
GTGATCCAAGCCCGTC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TCGTCAGGAAATCTGT	ref_5906_new	5	11	3	7	19	5	13	6	16	4
TGACGATATCTGGGAT	ref_5906_new	16	31	21	21	47	24	37	23	27	23
CCTGTTTGTGCGTGTG	ref_5906_new	36	99	40	29	100	29	75	22	125	23
TTCTGCCGTTTAAGGG	ref_5906_new	9	42	15	20	58	9	65	16	47	14
CCTCCCTCAAGTTTTG	ref_5906_new	26	46	24	24	36	25	56	19	58	20
AGAGTAATATGGCGCT	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GTCTCCATTCAGCGTT	ref_5906_new	61	128	70	57	172	78	177	63	150	53
AGTGCGCTCTGCCACC	ref_5906_new	1	4	3	3	3	0	2	3	3	0
ATTCGCTGTTTACCAA	ref_5906_new	12	26	17	4	22	9	28	10	28	13
TTGCCATTCTGCTTTT	ref_5906_new	6	13	8	5	13	6	8	11	5	6
CCCTCTTGGTGTTAGC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
CGCGACAGTGGCCGAC	ref_5906_new	9	18	4	10	17	6	21	12	13	11
GCTGGAAGGTCTTCAC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GCAACGCCATATACGG	ref_5906_new	37	66	40	28	63	37	64	22	79	20
GCTGAAGGAGGTCACC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TTCGGCTCTCGTCGGG	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GACCGTTTCAGTATGC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TGTAGGCCCGTCAGAT	ref_5906_new	2	8	4	5	12	4	15	4	9	6
ATCGTATTTACGGTTT	ref_5906_new	70	124	79	56	143	64	122	67	126	50
CCGCGACGGCAATTAT	ref_5906_new	45	88	49	40	75	28	83	35	79	36
GTGCATTACTTCCCAG	ref_5906_new	7	15	16	7	8	11	18	6	12	7
CGCGGTTGGTATAGGC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TAAGCTATCCGGTAGA	ref_5906_new	9	10	5	8	21	13	21	9	19	3
CTGTTCACTGATAATT	ref_5906_new	35	53	37	26	61	32	51	27	42	21
TTTAGTTGGTTGCAAT	ref_5906_new	2	6	3	4	8	4	9	4	15	2
AGAGTGTGGCCTTGCA	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TTGTTACGGTCTAGTT	ref_5906_new	12	29	22	22	14	18	24	11	36	16
GTTAGTCTGTCGACAC	ref_5906_new	51	150	65	63	129	67	131	59	143	47
ACGGGGGATATTGCCT	ref_5906_new	6	9	6	0	11	3	6	3	9	5
GATAGGATCTGGAATT	ref_5906_new	9	9	7	3	11	9	16	10	11	4
CGTTAGATGGCCTCAC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
AGCTCAGTTTTTCTGA	ref_5906_new	9	36	27	14	26	15	34	17	40	9
AAGTTGGTACGACCGG	ref_5906_new	4	44	8	8	36	15	50	3	61	6
AGGCATGTGATACCCA	ref_5906_new	4	23	7	5	20	3	20	3	27	5
CCCTGTCTTTATTTTT	ref_5906_new	65	114	77	52	116	61	134	49	140	33
GCTCGCGGACAAATTA	ref_5906_new	12	33	16	10	27	12	19	13	21	7
ACCGCCTATTAATCAT	ref_5906_new	31	50	26	21	49	15	48	23	48	17
CCTACAGAAATTTTCC	ref_5906_new	0	0	0	0	0	0	0	0	0	0
ATTATTTACAATGGTT	ref_5906_new	5	13	12	8	14	10	23	5	15	3
TCTTCCTCTACAATAC	ref_5906_new	38	78	45	38	78	42	87	19	79	35
TTATTGCTTCGTTTAT	ref_5906_new	2	6	3	6	9	2	14	8	6	1
GCCTGGATCAGTGAGG	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GCAGCTCTAGTGGTCT	ref_5906_new	15	30	28	24	41	18	36	19	54	24
AATACATGGTCAAACC	ref_5906_new	6	25	4	6	10	10	10	5	15	15
AGCGGCATGTCATGTA	ref_5906_new	11	18	24	10	18	12	27	6	21	7
TGGACATGCCACGCTA	ref_5906_new	19	25	16	13	29	13	34	15	42	12
GGCCCCCCGAACCCAC	ref_5906_new	41	63	51	39	70	30	85	45	57	42
CGGCAGTTCTCGTATG	ref_5906_new	27	53	43	25	68	18	74	28	60	32
GCAATTTACCAGACTC	ref_5906_new	52	123	72	56	126	56	121	52	115	39
CGTTGATCGACTTTAG	ref_5906_new	37	68	45	33	68	41	77	31	60	18
GCCTTCAGCCGGTTTT	ref_5906_new	50	106	68	52	137	48	130	66	147	56
TTTCACATTTCTGTGG	ref_5906_new	4	10	16	5	13	6	8	2	18	6
GCAGGCACGGGCTGGA	ref_5906_new	0	0	0	0	0	0	0	0	0	0
GTCTACACCCTAAAAC	ref_5906_new	7	13	8	11	22	8	15	9	21	13
GAGACAGTAGACGCCA	alt_5906_new	44	72	55	44	77	38	77	32	53	35
ACAATATCTGTTGTTG	ref_5906_new	0	0	0	0	0	0	0	0	0	0
TCGCAGTTGCAAGTCC	ref_5906_new	0	0	0	0	2	0	1	1	0	0
GCCTACGACGGCGCGT	ref_5906_new	14	30	23	13	31	14	34	13	36	9
AGGAAGACTCGAACCA	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCTGGCCACTGTG	alt_4446_upstream	9	20	4	10	23	11	27	9	28	4
AAGACTAGGGTCTACA	alt_4446_upstream	38	51	44	41	37	41	56	43	63	20
TGGGCGAGTCCGAGCT	alt_4446_upstream	33	53	47	24	38	33	37	18	45	31
CATCGAGTGAGCTATC	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCGGCCCAGTTGT	alt_4446_upstream	15	4	12	8	8	2	7	9	17	5
TTGTGTCTTATGCCCA	alt_4446_upstream	2	0	1	2	1	2	2	2	1	1
TTGCTTGTACGTTACC	alt_4446_upstream	17	26	13	14	26	11	35	6	37	9
CTGGGGGTTCATACAG	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTCTAACCCTTGA	alt_4446_upstream	47	49	44	43	72	37	62	39	65	34
CGTTTATTGTACAGCT	alt_4446_upstream	85	137	84	87	140	86	142	77	163	80
CTTCCCAGCTTTGGGG	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
CAGTATGCGTCCTGAT	alt_4446_upstream	29	38	24	27	51	32	40	28	43	24
CTGAGAATCGCAGCGT	alt_4446_upstream	10	25	17	8	16	9	31	8	12	12
GACCACGAGCTCCCCA	alt_4446_upstream	5	1	2	5	5	4	4	4	5	3
CATGTGGCATAGAGGG	alt_4446_upstream	36	36	46	24	41	40	41	19	62	32
AGTCATGTTTTGGCTC	alt_4446_upstream	33	65	62	45	86	45	76	44	79	41
CAGCGCGCGTCATCCC	ref_4446_upstream	1	29	5	4	19	5	20	2	17	1
CTCGGTGCCTGAGCCC	alt_4446_upstream	0	2	2	0	0	1	1	0	2	1
TTGCCCCTAGGGGTCT	alt_4446_upstream	7	25	30	14	11	15	30	17	22	22
TCTGAGCGGGCCGTTT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
AAATCTCATTCGTTTC	alt_4446_upstream	18	11	17	26	26	12	29	28	27	7
TACTCCCTGGAACCAC	alt_4446_upstream	6	39	19	8	36	15	27	13	43	13
ATTAGTCCGCCTGTCC	alt_4446_upstream	10	28	21	16	21	15	22	22	22	12
AGCTTGAAACTTCCCT	alt_4446_upstream	20	40	43	40	48	30	49	24	47	26
TACCCTATTGTTAGGC	alt_4446_upstream	9	23	8	11	14	15	19	7	20	8
TTGGTTCTTACGAGTA	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTACAATGTTACT	alt_4446_upstream	4	6	5	4	12	6	8	3	5	2
TAAGCGTTGCACATAC	alt_4446_upstream	5	7	4	1	8	2	3	1	8	2
CCGATTGTATTAGCCA	alt_4446_upstream	24	47	31	30	51	25	60	27	61	40
TCGTAGCGTCCTTCCT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
CTGCCGCTGTATTGCT	alt_4446_upstream	25	85	42	29	106	31	89	27	95	32
CTTTCGGCCCCAAGGC	alt_4446_upstream	35	55	49	27	45	33	67	45	48	28
TTATTATAAGACTCTC	alt_4446_upstream	38	85	71	40	80	48	86	45	90	45
TACTGGTTTTACCCTG	alt_4446_upstream	1	2	1	0	4	1	3	1	3	0
ACTACTGCTCTTATAT	alt_4446_upstream	11	37	26	16	28	18	30	22	42	20
TTTACATTTCTTTGCG	alt_4446_upstream	13	24	23	19	34	18	16	17	23	19
AACCGGCGCGGCTTTG	alt_4446_upstream	47	220	56	56	245	38	220	58	236	44
ATACCTCTACTCTGTC	alt_4446_upstream	3	11	9	6	5	1	6	3	7	1
TTCACGAAGTTGTTAC	alt_4446_upstream	15	27	11	12	29	18	30	17	30	12
GCTTCGTCTACATCTC	alt_4446_upstream	16	44	24	21	24	20	52	24	52	30
GGTATCGAATTGAGTA	alt_4446_upstream	94	108	118	62	85	64	146	83	103	76
ATGCTCCGTTACGCAC	alt_4446_upstream	108	172	125	87	176	101	164	78	184	83
AGCTGTATTGTCGACC	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTGATTTCTCTATGTG	alt_4446_upstream	20	38	30	16	35	15	22	14	43	24
ACATGTGCAATGATCG	alt_4446_upstream	28	51	52	31	41	31	53	31	37	20
GCGTTCTTCTGACTCG	alt_4446_upstream	5	5	4	5	8	3	4	2	6	2
CTGTCGAAGACAGAAT	alt_4446_upstream	23	29	20	21	34	15	34	17	32	16
ACCCGAACTAACGTTT	alt_4446_upstream	19	48	35	31	32	19	35	10	32	14
CGATCCCCCTGGCTAA	alt_4446_upstream	5	10	12	11	18	5	19	6	21	6
GATAGAACCATACACG	alt_4446_upstream	25	64	25	33	44	23	49	26	58	25
CAACTGGCACGCGCGT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTTCATTAGCTCA	alt_4446_upstream	4	5	4	7	4	10	4	4	11	4
ATCTTATAAACAGTTA	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGAAATCTTGCTG	alt_4446_upstream	11	29	11	13	27	18	25	13	32	12
CGCTTTATATCAACAC	alt_4446_upstream	15	28	18	21	19	20	24	16	29	14
GGTTTGGTGTTCTACA	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTTTCGATGACAC	alt_4446_upstream	161	265	197	187	307	176	300	174	316	151
CATCACGGCGTACACC	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGACAAGCATCCC	alt_4446_upstream	45	53	51	46	59	43	92	45	88	40
AGCTTAGGTGCCGCTG	ref_4446_upstream	40	63	34	41	59	27	53	34	54	32
CATGACCGATCGCGAT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
CCGTATACACTATGGT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCAAAGCCATGCG	alt_4446_upstream	42	81	46	48	68	39	63	44	70	49
GGCCATAGCTACTAAG	alt_4446_upstream	6	11	14	3	17	10	17	8	20	4
GGCCTGCGTACAGCCT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATATGTGAACTG	alt_4446_upstream	12	18	9	5	7	9	13	8	9	13
ATAGACGAAGTAACTA	alt_4446_upstream	9	14	12	13	6	6	15	5	13	11
CCTCGAGCGTCGTGCT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
TGCCACGAATACCAAG	ref_4446_upstream	46	116	67	72	109	56	107	49	95	64
GAGTATCTTAAGAGCC	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCCTATTGGTCGC	alt_4446_upstream	25	36	39	21	28	27	44	15	35	16
ACTAGGAGTTACATGA	alt_4446_upstream	23	30	29	27	25	14	48	7	24	22
AGGTTGAATTGCCTTT	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCATATGTCAGG	alt_4446_upstream	1	9	9	3	4	3	6	7	4	3
CATTCATAACTTTCTC	alt_4446_upstream	70	85	89	70	94	66	77	77	82	68
ATAATCCCCTCCTGAA	alt_4446_upstream	23	15	17	17	17	5	31	16	18	11
TCTCCGGTTTAGGAGA	alt_4446_upstream	0	3	2	0	4	1	2	1	6	0
ATGCCCCCCTCTGACG	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
GAAAGTCGAGTTGACA	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
TAGATGAACTACACGG	alt_4446_upstream	47	30	43	37	45	35	50	20	56	21
CCCATTTAATGAGTGT	ref_4446_upstream	28	39	36	16	31	19	35	20	49	29
GGTGTAAGTAATCTTC	alt_4446_upstream	10	10	9	8	7	9	9	7	8	11
GTGGCCCTTGGGTTTG	alt_4446_upstream	76	109	93	77	126	68	118	82	144	73
GTCTCCCAACTATCAG	alt_4446_upstream	25	26	23	22	46	26	33	23	35	20
AGCATCACAACAGCAA	alt_4446_upstream	32	52	30	47	52	31	67	29	45	32
CTTCCTCAATTACCCC	alt_4446_upstream	30	37	27	33	31	31	50	26	40	24
TTTTTTTATTATGACG	alt_4446_upstream	6	8	7	4	10	6	10	5	11	2
CGTGGAGAGACCTGAT	alt_4446_upstream	7	3	3	12	10	5	8	3	10	6
CGGCGTCAGCCTATTG	alt_4446_upstream	18	29	16	18	31	10	37	12	37	13
TTCGGTCTACAGCCGA	alt_4446_upstream	11	22	20	9	19	15	23	3	18	15
TCCACGCTTCTTGATT	alt_4446_upstream	8	6	5	3	9	6	6	3	4	1
CTAGATCATTTCATTA	alt_4446_upstream	0	3	1	0	2	0	3	1	1	1
CGGAATATTCATATGA	alt_4446_upstream	20	54	37	28	47	26	54	23	55	18
TTTTTGAGTCGATACC	alt_4446_upstream	4	3	4	4	3	0	4	3	5	1
GGTCTCTAAAAACATG	alt_4446_upstream	77	128	83	66	140	68	123	61	125	66
CTGTGATTGCCATGCT	alt_4446_upstream	1	1	0	4	3	1	4	0	3	1
TGGCGGCAGGGGGTTC	alt_4446_upstream	31	45	24	25	35	18	40	24	55	24
CTTTTCTGAGGTCATC	alt_4446_upstream	32	27	31	23	38	30	47	28	29	19
GTACCTTACTGAATGG	alt_4446_upstream	0	0	0	0	0	0	0	0	0	0
GATTACATCCCAACTG	alt_4446_upstream	29	43	25	28	47	14	46	15	60	15
ATGTTCGAGTCGTTTG	alt_4446_upstream	16	40	27	28	28	18	44	22	46	22
CCTCCGCTCCGTCCCC	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CCACTTACCCATGTCT	alt_4642_fdr	1	3	4	0	3	0	4	4	2	0
TATCCCGCTCAAATGG	alt_4642_fdr	24	69	25	38	81	21	73	25	81	29
GGTTCCTTTGTGGGTT	alt_4642_fdr	11	13	11	9	10	7	10	13	4	9
CCGCTCCTTAATGCCC	alt_4642_fdr	2	1	2	1	1	1	4	0	2	0
TATCTCAACCGAACCC	alt_4642_fdr	13	20	9	6	16	8	15	16	15	8
GGGAACTGTGTGTGTC	alt_4642_fdr	8	5	9	6	3	5	3	4	7	6
CCATCGTATTGCCGAA	alt_4642_fdr	19	16	15	26	14	5	17	12	18	20
ATTTCCTTGCGGAATG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
AAACTTAGTTCACTTA	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCCAGGGATCCGC	alt_4642_fdr	25	26	39	22	20	29	23	21	12	19
CCTGTGGTGCGCTCTT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CTACGAACGCCTGCCT	alt_4642_fdr	9	22	1	4	31	7	9	5	20	2
TGGTGTGGTGTACCTA	alt_4642_fdr	11	18	15	11	13	12	19	5	6	10
TCACTAATTTATAACT	alt_4642_fdr	17	24	36	26	31	33	29	19	36	24
CGAGATGAATTTTTTT	alt_4642_fdr	46	49	68	56	57	60	59	52	65	46
ATTATAATCTAGAACA	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CGAGAGTGCAGGTCCT	alt_4642_fdr	32	33	38	47	28	46	32	32	37	23
TTGTTAATTCATTCTG	alt_4642_fdr	30	34	39	24	26	39	32	24	33	18
TTATCCTTTCTTGTCT	alt_4642_fdr	105	106	140	129	158	132	120	114	142	92
ATTCTGTGTTACATAT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CAAGTCGTCTTTACAC	alt_4642_fdr	21	21	20	13	24	12	24	19	16	14
GGTACAACAATGACAC	alt_4642_fdr	23	13	16	12	15	12	19	6	18	12
AAAGTTCTGATATGCG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGCTTGTCAGCTT	alt_4642_fdr	30	28	33	24	23	19	30	21	22	19
AGCTTACCGATACTTA	alt_4642_fdr	15	24	20	15	17	11	14	19	19	20
TGTGCCAGAGCCCGAT	alt_4642_fdr	35	44	48	27	32	34	34	23	31	22
AGCGCCAGTTTACTTT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCAGGGTAACGAT	alt_4642_fdr	13	16	16	15	28	25	18	14	26	19
TAGTGCGTGATCTCAG	alt_4642_fdr	3	2	11	6	9	6	7	8	5	10
TCTGCTTTGGAGGTGG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTGATTGGTGAGT	alt_4642_fdr	92	151	180	127	146	95	160	110	123	110
CGAACTTAATGTGCAA	alt_4642_fdr	23	21	20	34	32	29	27	16	27	24
GGCGTTATACACCCAC	alt_4642_fdr	61	51	68	57	63	70	54	58	64	49
ACAGCTCGCAATTCAG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTGATTCGTGAGT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GTAGACCGCCTTATCT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TAATAGCTCAGGTCTT	alt_4642_fdr	10	9	12	18	10	8	5	16	6	7
TCTACTATGTCATGGG	alt_4642_fdr	52	55	40	31	40	42	38	34	42	39
TTCGTCAAAACCTATT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CCATTCCGTATCATAT	alt_4642_fdr	10	13	16	16	16	8	12	11	17	17
TCTTTTTACTGTGATC	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCGAGTCTGAGAC	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTGAGTCGCTCG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CGAACCCACTAATTAT	alt_4642_fdr	15	14	20	13	17	10	18	7	22	11
TCTCTACTCGTAGGGT	alt_4642_fdr	32	45	36	40	43	31	33	23	40	29
GACAATCCCCTAGGCT	alt_4642_fdr	5	6	4	2	10	0	16	1	7	1
TTACGTTAGGTGACTG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CTTATGACTCACTTTC	alt_4642_fdr	91	75	112	98	98	93	114	74	107	92
GATGCTTCCTTAGTAT	alt_4642_fdr	15	14	19	16	26	13	12	20	22	12
GCTTTCTCATATCGCG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGAATCCACGCCTTTG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GACACTAATCTACTTT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGAAGGGATCAGA	alt_4642_fdr	0	0	0	1	1	0	0	3	1	3
GCAAATTTTTGGATGT	alt_4642_fdr	135	128	175	126	101	148	109	180	128	148
CCTTGGTTACTGAGTT	alt_4642_fdr	26	40	28	22	53	26	29	24	19	16
CCACCCATGGGTCGGG	alt_4642_fdr	77	66	93	96	78	88	91	71	95	57
GGGCCAAGTAGCTCAC	alt_4642_fdr	8	8	2	3	4	3	7	0	9	7
CATAGTCTACTGCTCT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GTACAGCCTGGTTACC	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGATCAATCATAG	alt_4642_fdr	5	10	5	3	9	5	10	10	7	6
AATACCATGCGAAAAA	alt_4642_fdr	35	43	54	39	38	40	43	41	41	31
TGCTTTACTTGAGCGG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCGGATGAAGACTTCC	alt_4642_fdr	20	11	27	21	19	21	28	21	19	17
CACTTGCTAAGTAGTA	alt_4642_fdr	89	78	127	94	101	80	90	80	101	88
GGAACTTATCGCTTTG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGACCTTGGCCCA	alt_4642_fdr	18	23	14	12	21	13	20	12	16	28
GCTCTGAATGATTACT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CATTGCTGTTAGCCCC	alt_4642_fdr	36	25	51	49	31	25	36	35	33	37
TTCCTTACTTAAACAA	alt_4642_fdr	30	29	40	24	34	27	27	19	36	23
TGCCAAGTCCTGAAGT	alt_4642_fdr	114	159	134	101	124	110	125	103	133	92
TAATGGACTCGCATTG	alt_4642_fdr	45	32	50	36	37	32	62	47	45	27
TAAGTAACTATTCTTC	alt_4642_fdr	28	30	34	37	44	23	40	31	36	24
CTACGTTATAAAGGTC	alt_4642_fdr	0	0	1	3	2	3	3	2	0	2
ATTATCTCATACCTGC	alt_4642_fdr	59	69	47	61	58	65	83	47	83	55
TTAATATTGTTAAGCG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TTGACTTCCTCTACAG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
AGATTGATCTGTCACT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCTGCAAGGGTTA	alt_4642_fdr	46	36	56	48	41	39	35	44	37	43
CAATAATAGCGGCGAT	alt_4642_fdr	13	14	8	16	4	12	13	12	20	4
GGGGTCCTTGGAAGCT	alt_4642_fdr	20	14	14	10	10	5	14	4	4	14
TCTTTTCATTTCGAAT	alt_4642_fdr	0	0	0	0	1	0	0	0	1	0
CTTCCCCTCCAATATG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCGGACCTGTTTCGCC	alt_4642_fdr	39	33	61	34	47	51	26	46	41	36
CATAGTGCACGTAGAT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGTATCAAATTCCTAC	alt_4642_fdr	20	20	22	9	20	18	20	13	21	12
TTGATCCTAACTGCCT	alt_4642_fdr	83	91	88	84	90	67	100	71	108	90
TGTTATTATTTTGTTA	alt_4642_fdr	8	8	15	13	16	13	14	11	16	16
CATCTTTTATCATAGT	alt_4642_fdr	51	51	54	67	54	48	53	41	59	35
GCTTATGTGGAAATAC	alt_4642_fdr	25	13	14	11	21	18	14	22	23	11
GACCTACAGTTCAACA	alt_4642_fdr	21	26	23	14	20	31	14	20	14	17
TTACTTGATCAGGTTT	alt_4642_fdr	11	12	13	16	8	12	15	8	10	15
TCATCGCTCCCGCCTT	alt_4642_fdr	22	16	25	14	25	14	20	14	29	7
TGAAGAGCCGTGAATA	alt_4642_fdr	9	8	14	12	10	8	13	5	9	11
TTATAATGTCATCTTC	alt_4642_fdr	43	46	66	55	51	45	42	55	51	45
GTCCAAACTTCTATTA	alt_4642_fdr	21	24	21	45	21	22	23	25	23	25
AGGGGCGCTCGACTGT	alt_4642_fdr	15	15	14	13	13	10	21	8	21	7
TAGCGATATGTTTACC	alt_4642_fdr	36	35	56	30	40	47	50	32	44	24
AGTGATGTACCATTGG	alt_4642_fdr	19	14	17	16	11	11	22	19	12	20
TTTTGTATCTTAAACG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
AAACCGAGACAGGAAG	alt_4642_fdr	23	27	33	26	31	26	23	25	32	21
ACTGGTTGGCCCTGCC	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CAGCGTAGTTTCCGGC	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGGAGGAAATTTT	alt_4642_fdr	52	64	70	61	52	67	46	62	69	61
TCCCTACTTTCAGGGG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTTATTTGGTATC	alt_4642_fdr	4	8	9	7	12	5	4	4	9	4
GTTGCAAGCTTACATT	alt_4642_fdr	36	29	34	30	25	24	38	39	28	34
CAAGGCTATTAGGTGT	alt_4642_fdr	6	12	11	9	6	7	10	8	8	3
CCTGTAGTATTCATTT	alt_4642_fdr	3	15	11	5	22	2	18	4	24	11
ATAGCCTGGCCCTGGT	alt_4642_fdr	3	3	4	7	6	1	5	9	0	1
AATTGCACTGCGTGAG	alt_4642_fdr	29	35	29	24	28	40	38	23	33	25
TTGATCGGTAGGCGAT	alt_4642_fdr	43	54	48	39	34	44	43	30	54	33
CTCAACACCCTGGGCA	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CATTTATACAAGTTCC	alt_4642_fdr	13	12	21	18	12	16	19	15	10	17
GTTGACGTGTAAATAG	alt_4642_fdr	102	128	119	135	138	107	139	100	137	84
TGGCATTGTACGACAG	alt_4642_fdr	50	42	57	51	58	57	46	33	58	55
GCTCCTTGTATCGTAT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTTGTCAATTGT	alt_4642_fdr	31	32	34	28	36	30	26	27	28	20
GTACTTCTGGACGTAA	alt_4642_fdr	137	128	150	138	159	108	130	111	147	115
TCCTTGGCCTCTTGAT	alt_4642_fdr	29	32	44	45	31	32	25	23	26	25
TTCCCTTTTCATACTG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCGCGACCAGCGA	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
CCTAAAAAACCCGTTC	alt_4642_fdr	14	19	28	15	17	14	25	10	12	9
GCCCAGTACGGTCTTG	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGTTCGAGAAAC	alt_4642_fdr	5	3	1	7	8	4	5	3	1	4
CCTGGCCCGATTAAAT	alt_4642_fdr	6	2	9	5	8	2	8	5	2	6
AATATGTGAGCTTTGA	alt_4642_fdr	10	8	16	11	15	6	3	11	6	8
TGTATTTTCTCCGGGT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCGCAGTTTATTT	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCGTTGGATCATC	alt_4642_fdr	8	6	15	10	6	15	16	8	17	10
AGTCTGACTATGCCCA	alt_4642_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATTTCGACGTTG	alt_4642_fdr	28	28	35	35	40	34	58	42	36	28
TACCGGGATGGTGGCA	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGCATTGTATGAA	ref_1198_reverse	2	7	2	3	4	7	3	1	3	1
ATACACGCCGGGTCCC	ref_1198_reverse	17	21	12	22	8	13	18	15	21	13
ATCTATCAGCAGGCGG	ref_1198_reverse	9	21	21	16	15	11	11	18	15	10
CTAGGTTATTCTGATA	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGGTATTAACGTG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCCTTCATGAGTG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGTATATATTAGG	ref_1198_reverse	20	32	27	20	21	17	30	23	20	33
TCTTCGTCATCTGAGG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
AACTGCCCAGTGGTTG	ref_1198_reverse	62	84	74	64	87	41	77	52	82	61
CTCACTTTAGCACACC	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTATCTATTTGTA	ref_1198_reverse	66	80	76	77	85	66	85	73	81	77
CCACCATGATGCGGAT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTTCGCCCTTTTT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTCTTGTTTATCA	alt_1198_reverse	2	33	13	11	36	9	37	8	48	3
GTTTATATCATGGTGC	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
AATACAAGTTTCTGAC	ref_1198_reverse	8	11	20	11	16	6	26	10	13	12
GCCTTTGTATCACCTC	ref_1198_reverse	69	59	69	61	88	71	71	66	84	54
TTCCTTACACTGAATC	ref_1198_reverse	1	3	5	6	2	2	6	3	2	4
CCGTCGTCCATATGAC	ref_1198_reverse	1	17	5	2	15	3	14	0	26	5
TATATCCTACGTCAGA	alt_1198_reverse	17	19	17	18	17	17	20	16	19	17
TAATAATTTACATTCG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
ACCACCCCGTCTATGG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
ACGTGTGCGCTATTCA	ref_1198_reverse	33	20	22	23	19	20	24	18	31	25
TGGCGCTCGGTAAAGC	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GGAGACCTGCTCAGCT	ref_1198_reverse	37	27	49	38	44	41	34	44	38	34
TATAGTTTACTAAGTT	ref_1198_reverse	14	8	12	12	12	8	12	3	12	11
CTGAGGCAGACTGACG	ref_1198_reverse	35	33	42	37	43	28	51	24	40	29
AGCGGGCAACAACTCT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
AACCAATCTCGTCATG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CCTACAGGGGTTTTTC	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTTTTCATACTTA	ref_1198_reverse	1	2	1	2	3	2	2	2	1	3
GTAAGGTCGACGGTGT	ref_1198_reverse	28	47	38	15	30	23	32	28	47	30
TATTTCAGGCTAGTAA	ref_1198_reverse	8	7	3	7	5	10	15	6	18	6
GCTTATGTATACCGCT	ref_1198_reverse	113	137	142	126	134	120	117	113	160	114
CTACTGTACGCATTTT	ref_1198_reverse	0	1	0	0	0	0	0	0	0	0
TTCTGCACTTGTCCCT	ref_1198_reverse	58	61	69	55	54	46	73	54	67	44
GCTTCAATCTTTTCGG	ref_1198_reverse	206	157	236	193	188	177	210	199	191	198
CGGTGTATACCAACGT	ref_1198_reverse	15	16	7	9	9	9	10	6	7	13
CGAAAGAAAACCATCG	ref_1198_reverse	16	24	26	19	17	24	24	16	31	19
GTATTCTCCGGGACGT	ref_1198_reverse	50	47	53	49	40	51	41	36	48	32
CAGGCCTGGAATAAGT	ref_1198_reverse	10	36	15	10	23	11	28	6	22	10
CCAACTCTGACTAGCC	ref_1198_reverse	9	20	14	6	21	2	20	10	12	8
TCAAAACCAAGTCTCA	ref_1198_reverse	51	66	63	63	88	46	79	52	95	61
TGCAATTACCGAATCG	ref_1198_reverse	27	23	31	21	23	38	41	29	42	22
TAGAATGTCTTCATGT	ref_1198_reverse	5	12	11	16	11	17	9	8	6	8
ATTTCTGCATAGCGCG	alt_1198_reverse	72	74	100	79	98	76	72	75	80	68
GTTCATTGTGCTGGGC	ref_1198_reverse	33	20	35	25	32	24	29	23	24	11
GCCGCCGCGACGGTCG	ref_1198_reverse	29	37	31	16	38	22	29	29	23	20
CGTCTGTTCGTCGATA	ref_1198_reverse	68	130	101	97	152	59	168	87	188	58
TCCCTTACGAGCGTCT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CACGCGTTTGAGACAG	ref_1198_reverse	11	15	13	15	15	17	19	8	10	12
GCCGCTAGTAACCTTG	ref_1198_reverse	35	47	49	42	36	38	39	38	52	28
CGTTGCATTAGGGAAC	ref_1198_reverse	6	3	12	8	8	6	8	12	14	5
CTCAAGCTTGAATGGA	ref_1198_reverse	4	9	6	11	15	4	6	7	9	7
GAATGATTATCGTCAG	ref_1198_reverse	37	44	55	48	49	43	38	40	42	46
ATTTCAGCCGGCAGAA	ref_1198_reverse	18	20	33	42	24	33	34	18	28	29
ATATCGGGTTGATATT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCCGCTCTACAAT	ref_1198_reverse	56	63	116	62	72	62	65	74	82	54
TGTTTCAAGCATGTTC	ref_1198_reverse	4	3	4	4	6	8	2	6	4	4
CGTGGTATGGATTGTT	ref_1198_reverse	6	9	13	7	13	11	16	9	11	7
TTGGAACCAATTATTA	ref_1198_reverse	86	76	81	87	96	56	96	83	97	59
TTATAGTACTTCAGTG	ref_1198_reverse	13	14	20	26	19	17	29	22	18	19
TGTCCATCCTTACGGT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTACATACTACAC	ref_1198_reverse	11	15	19	10	13	20	11	16	25	10
CGAGGCGCCGCGCCTT	ref_1198_reverse	19	33	19	22	42	22	44	14	39	22
AAGAATACCGCCGCGG	ref_1198_reverse	24	15	23	15	14	21	16	20	27	20
TTTTCGAACATGCGCG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTTCAACAAGTAG	ref_1198_reverse	33	17	46	20	16	23	33	33	26	23
ATAATGCGTAAACCGA	ref_1198_reverse	130	111	124	101	147	102	105	101	120	104
GCTCTTCTCGGTCATA	ref_1198_reverse	7	5	4	6	2	2	3	3	2	3
ATTTTCTCGTTTCTAA	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGTAAGTTAAGCT	ref_1198_reverse	22	15	17	20	16	17	18	11	7	20
TAATGCGTTTTTCTGT	ref_1198_reverse	50	54	70	60	46	48	39	43	59	53
GGGGTTTAGCAAGCGA	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCACATCTCCGCG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTCGTTGGTGAT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCATCCGGAGCTA	ref_1198_reverse	60	88	99	64	70	66	70	60	62	68
TTTTTGAGCAAATTCA	ref_1198_reverse	65	67	77	77	65	65	66	74	68	46
CTACTGCCCATGGCCG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGAGGACGGGGCG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTCTCGGTCATC	ref_1198_reverse	20	14	19	12	15	20	24	16	8	11
GCATGAGACAAATCGC	alt_1198_reverse	32	21	25	11	18	27	23	11	25	20
AGCTTTGGGTTATGGA	ref_1198_reverse	23	21	22	29	22	17	24	19	24	14
AATTACTCCTAGCAAC	ref_1198_reverse	16	18	13	21	10	11	11	18	28	9
TCTTTATATTGACGTA	ref_1198_reverse	33	43	36	47	33	48	43	40	53	35
GTCGAACCTCGCTTGC	ref_1198_reverse	3	7	4	3	3	1	2	4	9	4
TGCTGAAACCGACCGG	ref_1198_reverse	33	18	27	23	19	15	22	8	36	16
TACAGAGTTTTTCGCG	ref_1198_reverse	68	67	80	59	82	68	92	47	89	54
ATATCTGAAAGCTTTG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCATAGTCACTAT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGGTGCATATTTT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
AGGTACTTTTCCCCCA	ref_1198_reverse	39	38	39	35	43	41	44	56	55	32
CGTCGTAATTGTATTA	ref_1198_reverse	18	12	21	18	18	11	11	15	14	13
AAATCAACACTTAGCT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGATACCCTGTTG	ref_1198_reverse	22	22	27	29	32	31	18	22	42	15
CCGCGCGATAGGCATC	ref_1198_reverse	5	0	2	1	2	3	4	2	3	3
CCCCCAAAAGTTCTCG	ref_1198_reverse	105	127	132	102	142	105	116	97	135	108
ATGTGGTCACATTTAA	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGAGGTCATATAT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GCAGAGATTTTTTAGG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CATGCTGAAATTAAAA	ref_1198_reverse	0	3	2	0	3	0	2	2	5	1
AGTCGCATCGGCATGG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CTATTCGAGGGGAGCT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGTTCAATACATA	ref_1198_reverse	75	85	89	66	48	61	67	58	64	56
CTGCTCGAGTTTGGTT	ref_1198_reverse	42	42	49	29	35	34	37	45	47	41
AGTGTGCTCCATGCTG	ref_1198_reverse	4	15	14	4	4	8	2	5	15	8
CCTCAGGTCCGCGCAC	ref_1198_reverse	22	17	28	27	27	23	21	30	18	19
TTTTCATGCGTCTTTT	ref_1198_reverse	12	14	23	18	17	15	8	10	20	18
GACTAGAAATAGATGA	ref_1198_reverse	7	16	11	18	27	18	19	10	23	12
ATACTCCTAGATTTAG	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
AACAACCGGGTAATCA	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCTAGCAATATC	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
GGATTGTGCGAAGTTT	ref_1198_reverse	26	25	28	41	32	28	35	19	25	35
ACTCCCCTACGGATTA	ref_1198_reverse	7	28	7	6	29	6	36	9	23	4
CTTCCGTTTGGTATTT	ref_1198_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTTGTGCATACGC	alt_1198_reverse	13	61	9	3	65	7	58	10	56	6
TAGGGGATGACATGGT	alt_1402_RC	2	6	8	5	6	8	16	8	7	4
CCCATGTTATTCGGTC	alt_1402_RC	69	91	83	59	98	86	111	56	120	68
TTGCACACCCGTTCCG	alt_1402_RC	2	0	0	0	0	1	2	0	1	0
TGCTACATGGGGCGAG	alt_1402_RC	30	36	26	44	26	15	41	27	40	22
AGTCTCGGAACGTATC	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCGAGCTGGCAT	alt_1402_RC	23	27	27	15	33	27	35	28	43	21
CTCGATGGAGCCGCAT	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
CGGATCTACGACTCTT	alt_1402_RC	3	6	7	9	9	8	8	5	8	2
AAGCTTCCTGTTTGTT	alt_1402_RC	8	15	17	5	18	10	19	12	14	9
TTCCCCCGTTACCCAG	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTATGCGTCCTC	alt_1402_RC	12	12	4	5	9	2	7	11	16	12
TTCTAGGGTTTTGTGC	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TGGGAGATCTCACCAT	alt_1402_RC	45	68	59	43	62	55	69	56	81	52
TCCCCTGTCCTGTGAG	alt_1402_RC	125	191	106	125	190	101	155	110	204	115
AAGTCTACTCTAGACG	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCTGTAAACGGT	alt_1402_RC	28	48	28	26	40	24	38	26	40	41
ATGATACCGGTAATCA	alt_1402_RC	18	33	26	19	34	17	23	8	28	24
ATGAGCTTTCTCCCCC	alt_1402_RC	11	28	38	14	29	23	26	19	31	18
GGTTCAATCCAGCCGT	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TGTGCGCTCGGCAGGA	alt_1402_RC	50	41	67	34	54	28	51	31	63	33
TTCTCGCCCTACACAT	alt_1402_RC	57	80	49	51	78	53	94	63	78	39
TGACGGACACTGCTTG	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
GGATGGTACCAATAGT	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
CGCGATCTAATGTTCA	alt_1402_RC	20	47	33	41	59	45	50	27	54	28
CTTTATTAAGTGGGGC	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TTATTAGTATGCAGAA	alt_1402_RC	55	68	77	63	94	63	87	75	120	67
GCCGGTCTAATAGAGT	alt_1402_RC	19	37	11	10	59	13	30	12	40	12
CAACTAAGTTCTTCGT	alt_1402_RC	0	0	0	0	0	0	3	0	1	0
TCAGCCACTTGTAGTA	alt_1402_RC	8	13	7	5	13	4	18	6	14	5
CTCTTCACTGGAACCA	alt_1402_RC	15	40	26	26	39	26	44	16	44	27
GCTTTTGGGTTATATT	alt_1402_RC	15	24	16	24	49	19	32	13	30	15
GGTCGGGTAAGTGTTA	alt_1402_RC	14	39	21	20	19	19	23	10	27	16
ACAGGCCGGCGCCTTA	alt_1402_RC	42	66	47	41	48	35	74	47	63	36
TCTTGCATCATTTTGT	alt_1402_RC	23	34	26	18	38	38	35	23	34	19
GTTGTCGTTTACTGCT	alt_1402_RC	12	6	10	8	7	9	14	8	8	6
ATCCGAGCATTTTTGC	alt_1402_RC	23	62	22	24	42	16	47	17	45	17
ATGGGATATGTCCCAT	alt_1402_RC	18	24	16	15	31	9	23	12	28	12
ATACTTGGGTCATCAC	alt_1402_RC	34	63	62	34	70	40	54	40	71	37
AATGTTGTTGTGTTTG	alt_1402_RC	2	5	8	10	5	6	4	7	15	7
ATTCGTTTTACAATGT	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
CCGGCTACTCCAGTTA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TAACCAGCTAAGCAAA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
ACTAGTTTAACCCAGT	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
GTCGGCCTCCTCAGGT	alt_1402_RC	19	12	9	9	15	16	33	16	23	19
TTGCAGCGCACCGTAT	alt_1402_RC	32	56	33	32	62	38	78	39	51	42
TTGTCCGGGATTCGTA	alt_1402_RC	14	18	19	5	18	16	17	18	16	14
TCTCGCGTTCAATCTA	alt_1402_RC	1	1	2	1	5	2	7	3	3	0
GCTTGTTAAGGCTCAC	alt_1402_RC	1	4	5	8	5	3	5	2	1	3
CTTAAATGTGTCCTCA	alt_1402_RC	37	67	45	49	60	47	82	63	61	34
GCGATCATTGGCATCA	alt_1402_RC	23	49	43	27	56	37	57	34	44	29
TAGTGAGCGCTGTTTA	alt_1402_RC	1	4	0	2	2	1	1	8	9	2
CGGTCTCTCCTCTAGA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
GATGGACCTGCCACGA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
GCATGTCTCTCATGGC	alt_1402_RC	18	28	22	14	12	20	26	11	19	22
CCCGCTCACTATAACG	alt_1402_RC	18	32	25	23	34	28	34	15	39	21
TTGTGATTCAACAGCT	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
CGCCAAACCCGTTTGC	alt_1402_RC	6	11	8	6	4	2	5	6	11	4
GGCATCCTTAATGGTT	alt_1402_RC	29	29	30	13	32	16	39	19	40	25
CTGCGGCCAGCTGTTG	alt_1402_RC	4	12	6	5	13	4	16	7	15	4
TAGCATGTCGCGGTCA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TCTCACGTGTAAGCTA	alt_1402_RC	25	25	22	20	29	27	22	21	38	14
CCTTACCCGAAAGTTA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TGCACAGACTGCGATG	alt_1402_RC	79	134	97	91	158	84	161	76	161	98
ATCGCAGGGCCGCGGT	alt_1402_RC	20	35	16	24	22	20	37	26	27	17
CTACATTAGGACAGCC	alt_1402_RC	37	71	61	38	86	44	58	40	67	43
ACTTATCCACAGTCAT	alt_1402_RC	6	2	5	5	1	2	6	0	9	3
ATCTTGTCATCAGGGC	alt_1402_RC	9	7	9	9	17	8	8	6	8	4
GACGTTTGTCCCAAAG	alt_1402_RC	70	86	69	52	100	51	105	57	92	48
CGCGCGCCCCACTATT	alt_1402_RC	12	35	9	19	23	6	30	12	38	11
GTTCGTTGACGTGTTA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
GCCAATATGATATAGC	alt_1402_RC	8	14	15	9	15	5	16	11	20	11
TCGCTCTTGCCTCTCC	alt_1402_RC	107	103	88	70	121	68	118	70	137	58
GAGTACCCAGCACCAT	alt_1402_RC	31	41	31	38	50	38	30	32	39	30
CCACAACATGGGGTTT	alt_1402_RC	137	132	160	135	119	129	143	108	147	106
AGTAATTGCAAATCGC	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
GAGTAATTCCAGAATT	alt_1402_RC	18	23	23	22	27	15	38	23	38	13
ACGACCGCAGCATCTG	alt_1402_RC	29	27	28	28	38	26	36	24	34	24
GTGCGTAAACTTCTAC	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
CCCGCTTGCCCTATTC	alt_1402_RC	7	22	5	3	10	3	16	3	16	7
ATCGTCTCAATTTGTA	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
AAGGGCCGCATCGTGA	alt_1402_RC	41	34	46	37	44	40	43	25	39	40
AGCGCGTCCGCTTTTG	alt_1402_RC	71	95	104	73	93	73	125	61	103	75
TTCATTCTAAATTCCC	alt_1402_RC	64	60	72	57	71	57	70	49	59	54
ATATATAATGCCATTC	alt_1402_RC	21	30	20	17	29	24	38	21	31	15
GGGATTGCCGCTAGCA	alt_1402_RC	12	32	17	25	22	17	24	14	23	8
TGGGTCTGGAGGAATG	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
ATCACGTATAAGAGTA	alt_1402_RC	14	22	22	13	18	15	24	10	13	10
GACAATTAAACCTCCC	alt_1402_RC	10	20	16	7	18	14	23	8	20	6
GATGTTTTCTCATAGG	alt_1402_RC	55	70	60	56	67	57	72	61	78	59
CGTGTGACTTTTTTTG	alt_1402_RC	0	0	0	0	0	0	0	0	0	0
TTCCACAGCTGTGCCG	alt_1402_RC	35	40	30	30	40	25	45	30	42	26
TCCAAAGTTATACATT	alt_516_upstream	19	29	22	24	16	17	34	10	24	17
TGCGTTGGGGGCCGGC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ATACTGCATCGTCTCG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
AGAGATACTTAAGTAG	alt_516_upstream	160	295	173	138	257	136	298	134	310	139
CTTATAAGTGTCCCAC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTCGCTTTATCGG	alt_516_upstream	4	7	5	2	7	3	11	3	13	4
CAGCAACAACTAGGTA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCCCTTATCATAC	alt_516_upstream	9	14	13	7	19	6	13	7	14	6
TCTGGGTTAACGCTCA	alt_516_upstream	29	48	27	19	44	18	30	16	42	24
ATTCTACTGTTGCCGA	alt_516_upstream	5	7	8	2	4	6	10	2	10	5
GCGCGCGATTACATGA	alt_516_upstream	18	21	18	25	18	10	19	16	26	11
CTACTCTTCCATATCG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GCTAATCCTATCACTA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTGGGCACGCAGG	alt_516_upstream	6	5	4	1	7	4	6	6	11	1
AATCAAAACGTACGGG	alt_516_upstream	10	14	8	2	14	3	21	3	15	3
ATTGCACTCGTCCTCA	alt_516_upstream	0	2	0	1	1	0	2	1	0	2
TTCATTAGCTTACAGC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCCTAGTGATGAC	alt_516_upstream	3	7	8	7	8	7	13	5	10	10
ATAACTACATTACTGA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCAATCTTCCCGT	alt_516_upstream	5	29	11	2	48	5	49	5	24	8
TACTTAATCTGTGATT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTGGGTTTTGACT	alt_516_upstream	56	88	72	54	107	60	84	80	108	60
GATTATAGTGGCCGGT	alt_516_upstream	4	14	14	3	8	7	12	10	14	10
TCCCGCCCCATTTATG	alt_516_upstream	15	18	19	15	15	11	34	7	20	14
TAAAGGGACTCGCTAT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCAGGGGGTCGTG	ref_516_upstream	44	39	41	32	37	29	50	24	57	28
TTTATATCACAGGGCT	alt_516_upstream	3	14	5	5	5	7	7	5	10	8
AATCTTGCCGTAACTT	alt_516_upstream	8	11	6	11	6	13	15	11	11	4
CCCTGCGCCGCATGCA	alt_516_upstream	2	11	5	3	9	4	15	4	12	5
GCACTTTTCCTTAGTG	alt_516_upstream	21	24	13	20	35	17	32	16	21	15
TCCGGTCAATCGAGGC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTGTATGCCGGAG	alt_516_upstream	24	29	18	22	29	25	35	17	40	21
CGTTTCATACCGAGGG	alt_516_upstream	7	11	12	4	12	5	14	4	9	4
GTCCTCAATTCTATCG	alt_516_upstream	9	12	7	11	18	8	21	11	23	13
ACGTCAAGGTCCGTTC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TATTAACATGTTTTTA	alt_516_upstream	11	32	15	13	21	17	23	16	14	8
ACCCAATAACAAGCAT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTGCATAGCGATC	alt_516_upstream	1	8	8	3	8	5	11	9	8	6
TCATTCGCTTTCGGAC	alt_516_upstream	39	63	45	35	70	37	75	17	54	30
TTTCCTACCTCTTCTC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
AACGTCGGAATTCTGT	alt_516_upstream	3	6	4	6	7	2	11	3	4	3
AGCCTCCCCTAAACAC	alt_516_upstream	0	0	0	0	3	0	0	0	2	0
GCGCTCAAACTTTGCT	alt_516_upstream	6	0	7	4	1	1	10	3	9	3
CTGGGCCGCGCCTTAC	alt_516_upstream	8	57	7	5	60	6	64	11	54	5
CATTCATTCGTTGATT	alt_516_upstream	4	2	2	3	10	2	8	2	0	3
CACACCGTCGCTTCGA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTTCGCCAAACAT	alt_516_upstream	10	7	7	9	20	12	9	1	16	10
AGTGGACTTCTCTATG	alt_516_upstream	4	2	3	3	4	2	1	3	4	0
ATTCTACCCACCGGTG	alt_516_upstream	13	40	18	19	42	23	61	22	50	22
CTGTTTCCAAGCCGTT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCAAAATTATTTT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TATGCCACGTGCCTCG	alt_516_upstream	33	73	50	40	73	45	51	37	87	34
CCAGTCCCTTACGTGT	alt_516_upstream	1	5	1	1	4	2	3	1	3	0
TATTTTAGCTGTAGGC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TTGACATACATTAACT	alt_516_upstream	5	6	13	7	7	10	8	2	17	9
CAGAATGTGCTAAGGA	alt_516_upstream	4	3	0	0	4	1	6	1	1	3
GATTAATCGCTTATCA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTCCTTACTCTTC	alt_516_upstream	101	183	120	97	183	84	172	89	130	111
CTTACTTCCCCTCGTT	alt_516_upstream	17	24	24	6	29	19	40	11	46	14
GCGGCAACCGAACGTT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GCCCAGCTGTTCATGC	alt_516_upstream	91	139	104	87	137	79	121	70	158	82
GCCTGATCTTCTGGAT	alt_516_upstream	59	76	54	56	88	53	78	50	108	36
TCTATCTCTACGGTCG	alt_516_upstream	16	29	13	14	30	18	21	16	28	11
TAGAAAGTATTTTGTC	alt_516_upstream	1	2	4	4	1	2	1	1	2	2
GTTGGCGTCATTATGG	alt_516_upstream	34	55	37	41	57	29	61	34	63	32
CGAATTCGAGTTGCCA	alt_516_upstream	5	5	0	3	2	4	8	1	3	3
ACAGCGTATGGTATAG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GTGTATCTATCCAGTA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTCTCGGTAATCT	alt_516_upstream	8	13	7	4	14	3	13	3	13	3
GAATATACAGCCTGCT	alt_516_upstream	7	14	12	8	18	8	14	15	11	10
TCACGTGTATGAAAGT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TTGTATAGCTGGCTTT	alt_516_upstream	58	67	55	36	74	46	80	39	65	38
GTTGGAGATGAATTCG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTGCCAATCATTG	alt_516_upstream	2	6	11	2	7	5	9	2	11	6
CGGGTAGGTAAATCCG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTATCCGATGAC	alt_516_upstream	9	6	10	10	16	8	17	9	10	7
TTCGGCGCAACGGAAC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CTTAACGTTACTGTAT	alt_516_upstream	40	58	35	24	41	33	49	30	49	27
AATGCCTAAGACGTTT	alt_516_upstream	3	10	2	10	4	6	9	3	10	4
TCAACGAGGCAGGTGA	alt_516_upstream	0	3	4	3	10	5	8	0	2	2
GGATTTGCGCACTAGG	alt_516_upstream	13	9	7	6	7	13	13	7	16	17
ATCAGAGCCCGGATCC	alt_516_upstream	6	5	6	3	6	6	3	2	2	5
TGTGGTCTCCTACTTC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CAAATATTCCGTCCTG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GCATAATGGTTATCTA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCTCAAGCAGCCT	alt_516_upstream	17	14	13	14	24	15	29	7	22	14
CGCCGGCCACTGCAGT	alt_516_upstream	55	159	75	73	180	64	168	59	175	54
GTTTTCTACTCCGTAT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTATTCCCATCAG	alt_516_upstream	12	13	9	6	16	8	8	8	12	2
GATGGCGTATTAGCAC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGAGTCTGCTAGT	alt_516_upstream	7	3	6	4	12	3	5	6	6	3
GTGGTAGTAAAATTCA	alt_516_upstream	0	4	3	2	1	2	3	2	5	4
AAGCGGAGATCACGTT	alt_516_upstream	22	43	38	19	42	27	44	30	46	27
TCTTGCGGAGTATTAA	alt_516_upstream	9	16	8	7	15	8	17	6	18	8
TCTGGAAGTCTCGTTA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GGGCGGGGTTAGCTCT	alt_516_upstream	12	21	21	12	13	17	20	6	22	10
TATTTAGGTTCAGGCT	alt_516_upstream	11	18	12	10	25	14	22	14	17	8
ACAATTTTGTATCGGT	alt_516_upstream	1	2	1	0	2	0	0	1	1	0
TCGTTTTTCTTACAAA	alt_516_upstream	8	8	2	3	8	10	10	5	12	5
TATCGCGTGCGTATCT	alt_516_upstream	55	85	62	42	78	50	91	40	80	48
CAGCCTATTCGTGCCT	alt_516_upstream	10	30	8	3	47	5	52	6	47	11
TCATAAGTGACGATGT	alt_516_upstream	4	13	7	5	16	6	7	5	10	4
TTCTACCAGATCATTG	alt_516_upstream	11	28	18	26	15	13	27	12	31	15
ACTTTCCACTTAGTCA	alt_516_upstream	22	22	21	9	42	16	31	14	24	18
GTGGGTGTAGTACGTG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GCAGGTGTTTCACTTC	alt_516_upstream	20	45	28	28	35	21	47	12	50	24
AATGCTTCCGTGTTAC	alt_516_upstream	3	4	9	6	5	5	7	6	6	2
TTAGGTCGTAGTTTTT	alt_516_upstream	2	2	0	1	3	0	1	2	0	0
GGAAAGCAAGTACTCA	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAATGTCTATCGC	alt_516_upstream	13	18	18	11	17	12	12	11	19	13
TTCAAGTATGGCGGAT	alt_516_upstream	27	31	20	29	23	17	28	19	22	23
ATTTTGTCGCCTTAGT	alt_516_upstream	2	10	11	4	6	2	7	3	10	3
AAAGGCATGAGGTAAT	alt_516_upstream	41	43	50	30	35	34	41	29	64	40
CGGCCCGGTCCACCCA	alt_516_upstream	27	21	17	18	21	21	29	26	22	17
GAAGTGTCTTTCGGAG	alt_516_upstream	5	13	14	13	21	18	24	9	23	4
GTCGAGTTCTTGCCGA	alt_516_upstream	11	14	12	3	4	10	16	6	29	8
TGCGACGTTAGGACTT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCACATAAGTTCT	alt_516_upstream	28	47	37	32	32	30	60	23	50	32
TGTCTGTTTGTTACAG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGGCTCCGGGTGT	alt_516_upstream	15	29	28	18	41	24	31	25	37	17
CAGCATGATCGGGCAA	alt_516_upstream	8	7	6	5	8	7	12	4	8	6
GGCGAATTTAATACAT	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTTTTCAGGTAGG	alt_516_upstream	32	56	34	20	58	39	39	19	50	35
TGATTGTCTCCCGTTC	alt_516_upstream	8	17	11	8	11	12	11	7	26	13
TGAGTCCTTACTCGCT	alt_516_upstream	17	16	8	16	24	7	15	12	20	6
GGTATGGTTGCAGCGG	alt_516_upstream	24	38	58	29	48	37	66	24	50	25
ACTAGAGGTCCCATTG	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGTGTCTAGCATG	alt_516_upstream	10	13	8	3	12	4	25	6	14	9
CTTTGGTTCTTTCGGC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGCCAGTACTGAC	alt_516_upstream	3	30	9	4	46	3	44	11	43	3
CGGCACATGTTTGATC	alt_516_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCAGGCGATGAC	alt_516_upstream	5	15	12	6	5	7	14	5	12	7
GCCGCGATCGGCGATT	alt_516_upstream	1	6	4	3	10	3	3	3	13	5
TTCAGGCTTTCTGGTT	alt_516_upstream	14	16	17	11	20	8	16	6	31	6
TTTCGAGAGGCCTGAC	alt_516_upstream	18	29	22	5	18	9	20	4	33	11
GCCAATAAACATTGAA	alt_516_upstream	2	4	2	5	2	3	6	3	8	4
AAAATTGGTCACCGGG	alt_516_upstream	4	3	2	5	6	2	11	3	10	0
ACCTTCAACCCGCCTT	alt_516_upstream	0	1	0	0	1	1	0	0	2	2
CTCTTTAGGTCTTATC	ref_1700_fdr	17	34	16	19	30	14	41	20	23	17
AGCGAGTTATTGTTGG	ref_1700_fdr	13	11	15	6	18	10	22	10	15	12
TACTGTAAAGTGCGTC	ref_1700_fdr	57	76	55	36	84	50	80	61	96	43
TTCAGGGAGCCGGGGG	ref_1700_fdr	6	17	8	11	11	9	7	6	13	15
TTGTAGTTGCATCTTC	ref_1700_fdr	11	15	5	5	10	6	13	7	16	10
ACCAATTCCACATAGA	alt_1700_fdr	59	97	76	64	109	52	103	67	113	54
CCACATACGATATATT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
ACCGAGCCTGCCGCTG	ref_1700_fdr	20	32	18	14	42	26	48	22	37	19
AGCAGCCAGAGTGGCA	ref_1700_fdr	5	7	5	4	8	1	8	9	10	5
CGTTTATTCGTAGTAT	ref_1700_fdr	7	11	5	6	5	3	11	3	9	5
AACAAGCTAGCTTAAC	ref_1700_fdr	0	4	4	7	4	1	2	1	6	4
GCGTAGACAGTTGCAC	ref_1700_fdr	0	0	2	3	0	0	1	1	1	0
GCACATCCCTGGTCTC	ref_1700_fdr	9	9	8	8	22	2	21	5	8	3
CGGACGATTATTGCCC	ref_1700_fdr	7	6	3	3	5	3	10	1	5	3
ATGGGTGCCTACCATA	ref_1700_fdr	1	4	2	0	4	4	2	3	9	1
AACGTCCTAAGCATAC	ref_1700_fdr	38	68	59	51	75	37	78	51	93	41
ATATGACTTTAAGGTA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CGATTTACCATACTCT	ref_1700_fdr	65	71	67	52	64	52	72	56	76	59
CTTATACATGATTTGT	ref_1700_fdr	29	41	37	37	44	35	46	35	40	17
GCCGCGCAGTCGCGAG	ref_1700_fdr	17	11	11	6	14	3	8	7	19	5
ATATCTCCACAAACGA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGGGTCGGTGTGG	ref_1700_fdr	18	34	32	23	23	22	28	32	44	21
TGCACTGTGTATGCTC	ref_1700_fdr	24	39	33	16	45	27	51	26	44	18
ACCAGATCACCTCTTG	ref_1700_fdr	103	138	114	100	147	90	148	82	164	100
CACATCAGGGAGGTTT	ref_1700_fdr	13	29	20	17	11	13	14	7	17	12
GGTACGAGCTGCCACA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTCGCTCGCAATA	ref_1700_fdr	12	20	15	19	14	11	20	19	14	17
TTTTTTTTGAGGGAAT	ref_1700_fdr	20	23	21	16	22	18	21	12	34	11
AATATAAGTATGTTTA	ref_1700_fdr	0	0	2	3	2	1	4	7	4	1
GTGTGGGAAGTTCGCT	ref_1700_fdr	21	34	44	22	35	27	36	34	42	19
TCAGCATTTTAGGCAA	ref_1700_fdr	18	15	18	12	20	12	26	14	29	15
TGTAATCTCACGGCCA	ref_1700_fdr	6	1	8	1	2	4	10	3	7	4
GTAGCCATTGGACTCC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGTGCTCCTTCGA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACTGGACTCTCA	ref_1700_fdr	109	169	128	124	179	108	185	114	203	96
TAATGTCTATCTCGAG	ref_1700_fdr	145	166	178	123	158	120	180	137	181	109
TCTCAGGCATACAGGG	ref_1700_fdr	32	38	30	28	30	26	38	23	36	22
TTGGACATGGCTCACT	ref_1700_fdr	16	22	25	18	13	17	20	20	26	11
GGAGTGAAGAATTCTA	ref_1700_fdr	33	39	47	26	42	37	47	31	57	24
TTCTTTCCAATACGGG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GTCACCCCCCCAATTG	alt_1700_fdr	12	61	11	10	62	6	62	12	56	8
ATCACCTGGGTCTATT	ref_1700_fdr	22	30	33	14	32	21	23	16	29	14
GAGGGGCTAAAGCACT	ref_1700_fdr	56	66	55	56	66	49	76	62	76	43
ATGACGATATTTCTGC	ref_1700_fdr	41	50	58	40	47	51	51	44	62	34
CTCCTGCCTTTCCTAG	ref_1700_fdr	25	41	38	27	39	24	39	30	36	23
TGTTACGGTCTTACCG	ref_1700_fdr	6	10	10	5	14	5	25	3	14	8
TTCTTCTTTTTTCACC	ref_1700_fdr	9	12	10	15	13	14	7	4	12	13
CACTTTTACTCCCAAA	ref_1700_fdr	4	6	6	3	7	4	8	6	7	6
TGCTCTTGTTTCAGCA	ref_1700_fdr	22	17	17	25	23	15	32	16	26	12
TTATTACCCCACGGTA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TATTTCACAGAGTGCG	ref_1700_fdr	54	70	57	47	62	44	55	44	76	36
TACATCGGCGTGTTCG	ref_1700_fdr	33	40	37	33	36	36	44	28	48	28
CACTTCTCATGAAATT	ref_1700_fdr	40	24	14	43	54	22	50	33	37	32
CCCGTTTCGATCAAGT	ref_1700_fdr	4	12	11	4	10	3	6	5	4	3
CCTCTTCCCGCCAGTA	ref_1700_fdr	14	21	22	11	31	8	40	4	31	7
GCGGGTGAACGTTAAC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTATCCTGCATTA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGTTAAATGGTC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
AAATTTCGAGGACTGG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCATTCACTCCGC	ref_1700_fdr	75	87	84	70	96	66	114	66	139	60
TGGCTCCGTTTCTTAG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GTCATGTCCTTGATTA	ref_1700_fdr	11	22	18	5	20	18	14	15	21	8
TTAAGGTTCTCAACAG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGCCGTATGGTGC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTGCTCTTCGCGG	ref_1700_fdr	4	17	11	15	11	10	11	13	14	11
CATAGTCAACTCGGAA	ref_1700_fdr	46	76	69	42	70	50	63	56	88	40
CCATGCTATTATACTG	ref_1700_fdr	52	85	97	71	106	61	95	63	105	62
CTCTCCTCTCGTTCCA	ref_1700_fdr	50	79	56	50	75	43	50	29	65	40
TGCCCTACATCAATGG	ref_1700_fdr	19	23	34	20	23	24	25	29	33	20
CACGTGCGGCGATTTG	ref_1700_fdr	17	32	37	18	35	10	32	14	37	15
TAGGTCCCTATTGTGT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTATTACTGTACA	ref_1700_fdr	15	16	20	12	21	10	21	8	25	16
GATCAAGGTTTCGCGC	ref_1700_fdr	8	10	0	3	7	5	7	1	4	3
CTTTCTCTCTCCGGCT	ref_1700_fdr	9	10	13	6	7	6	12	8	11	6
TTGCGGTCCATGTGCA	ref_1700_fdr	2	5	0	0	2	0	4	3	2	0
ACCGGGTGCTATAGTT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGTATTTTAAGAA	ref_1700_fdr	0	1	2	1	5	0	3	1	1	1
TCCAGCGCTCCCGAGT	ref_1700_fdr	14	31	20	14	33	19	30	8	39	19
TGCGTCGTGGTTAGCA	ref_1700_fdr	5	12	8	7	3	7	13	9	12	5
AATTTCACAGAGTGCG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCGGTATCAGATG	ref_1700_fdr	35	50	35	31	38	38	63	30	42	25
TCCGCTGCTAATGTTC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TCACATCGGATTGGTA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTACTATTGATTGATT	ref_1700_fdr	14	19	15	8	3	6	18	7	13	7
TTCTTAATCTATTAAG	ref_1700_fdr	88	110	99	90	122	80	126	86	130	79
GGGGTTGCCGCTTGAC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCTCCTTATCCCG	ref_1700_fdr	25	40	35	30	41	29	64	22	38	30
GTACACCCCGCTATGG	ref_1700_fdr	5	3	0	5	6	7	1	2	7	3
GTGTATTTTGTCAGTG	ref_1700_fdr	10	8	10	5	12	7	11	7	17	2
AGGGTATGGTACCACT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GCAATCTTATAGGATA	ref_1700_fdr	26	29	26	27	22	23	31	19	27	21
TGAGCCATCCTCTGGT	alt_1700_fdr	20	28	22	26	35	13	37	18	43	21
TCAAACCAACTGTGAC	ref_1700_fdr	163	263	210	176	297	164	284	166	298	156
TCGCCAAAGCGTGGTG	ref_1700_fdr	3	1	5	5	5	2	7	4	2	2
CTAATTGGGAAATGAA	ref_1700_fdr	89	141	115	92	127	85	121	82	120	80
GCTTTAGACTCCGGGA	ref_1700_fdr	4	4	1	5	9	6	3	4	5	1
CTGTCCAGTCCGGTAC	ref_1700_fdr	50	67	77	60	95	49	79	35	75	53
ACCTTCTGAGCGGAAG	ref_1700_fdr	25	47	29	19	38	17	37	22	37	24
TATGGCCTTCGCCACT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAGCGTCCATTGC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
AAACCAGTCCCCTTGC	ref_1700_fdr	8	8	10	3	5	3	8	3	11	0
AGTCTCGAAGGTGGAT	ref_1700_fdr	22	44	33	36	47	28	50	31	38	22
AGAAGCGCGTTGTTTT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGCAATTTGGGACTTA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCCTACGGCTTGA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTGTTTTTTTGGG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGTATTTACGTTT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCGTCACTAAATA	ref_1700_fdr	33	27	33	32	34	25	37	28	43	22
TATTTGGATACTCATG	ref_1700_fdr	189	261	224	182	271	198	259	152	254	165
CATACATTCTCGTGTG	ref_1700_fdr	14	16	16	19	29	18	28	14	29	15
TGGTTCACCTGTCCCT	alt_1700_fdr	14	24	19	8	16	17	13	19	19	9
GCTCCTATGCCGAGAA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTTTATCCAGTCCGAT	ref_1700_fdr	4	4	4	2	4	2	5	4	3	5
TGTAGCATGATTTTGG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
ATCATCCAGTTATCTG	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGGCTGGTTCGCC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TCAATAGTTCCTATAC	ref_1700_fdr	17	21	22	9	38	12	31	23	30	11
AATTGTACAGTTTTGA	ref_1700_fdr	5	1	6	8	5	2	3	5	2	8
AAAAGGAGTATAGAAG	ref_1700_fdr	27	44	37	38	46	41	44	24	42	33
CTGAATGTTTTGCTAT	ref_1700_fdr	55	69	75	49	78	58	67	46	71	54
GTCATAAATACAACAC	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CATCAACGCCAAAAGT	ref_1700_fdr	6	15	14	5	7	10	5	6	9	3
AGTTCTCAGGGATTAC	ref_1700_fdr	18	20	26	15	28	14	14	16	19	17
CTGTTGCGTTTTCCAT	ref_1700_fdr	7	6	4	2	9	10	13	3	8	8
GGTGCCCTAGGTTTGG	ref_1700_fdr	57	93	61	71	106	58	93	40	86	41
CCCTTCTTTTTGAGTC	ref_1700_fdr	17	16	20	9	26	16	26	24	28	11
GACCCCAAAACTCCTG	ref_1700_fdr	72	88	86	71	79	76	80	58	117	67
GTTGGAGTAGTCTACA	ref_1700_fdr	25	37	30	22	40	21	37	21	23	20
AGCTAATGTACTCCCT	ref_1700_fdr	7	9	4	3	9	2	15	5	9	4
GGTGATCTGTCGGCGT	ref_1700_fdr	26	31	30	30	27	32	36	20	26	32
CCATGTGGTTACCCTA	ref_1700_fdr	39	63	41	43	69	39	41	33	59	28
GGATTTTCCGTCGATC	ref_1700_fdr	26	25	20	25	26	21	35	21	38	16
TAGTATATCGGAATCT	ref_1700_fdr	12	21	19	12	12	6	16	10	17	9
TGTAAATCACTCTCTC	ref_1700_fdr	12	10	13	7	15	7	13	6	11	10
ACATCCTGATATTTGC	ref_1700_fdr	36	48	48	50	53	42	72	46	87	44
AGCAATATGGGGACCT	ref_1700_fdr	17	23	26	18	18	14	23	21	19	16
TGAGCCGAATACGAGT	ref_1700_fdr	11	25	33	28	33	13	29	12	26	12
CAGTTATTTTTCGGTG	ref_1700_fdr	10	12	10	14	18	8	11	16	20	8
GCTCATTAAGGTCTGA	ref_1700_fdr	29	25	22	10	26	16	34	18	25	14
CCGATCGAGTGCCCGT	ref_1700_fdr	30	115	31	26	135	24	117	35	148	26
CGGACCCGCTAAGAAT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
GTATGTACTAGGGCAG	ref_1700_fdr	85	102	91	97	127	69	115	77	92	76
TTGACTGGCTGCTATA	ref_1700_fdr	18	40	31	41	40	16	54	17	29	17
ATGCGTGGCAAATCTG	ref_1700_fdr	0	4	5	7	5	4	8	3	7	4
ATCTCAATGTCAGGTG	ref_1700_fdr	97	174	135	112	197	119	135	111	185	90
GCGTGATCCCGCTTCA	ref_1700_fdr	17	17	19	20	23	22	17	27	21	21
GCTATTTTTATTTCCA	ref_1700_fdr	37	36	43	38	42	28	32	23	47	21
AGCCCTTCTCGGTGAG	ref_1700_fdr	21	31	16	16	27	13	22	17	15	14
TGCGGGGACGATGTAT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TCATTACACCTGAGGT	ref_1700_fdr	44	65	31	19	49	35	56	34	65	31
TTTGGAATGCACGGTG	ref_1700_fdr	60	118	64	63	107	57	124	67	106	49
AAACCTTGTGCGGGCA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGCTAGTGAGCAC	ref_1700_fdr	3	13	14	8	7	7	14	3	7	4
TCTGCCCCCACAATTG	ref_1700_fdr	12	8	8	9	4	4	15	12	5	9
ACTCCTGAATGTGCTG	ref_1700_fdr	123	215	156	114	214	88	216	114	216	108
TCAGAGCTGTTGTCCA	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
CATTGCATGTAAAGTC	ref_1700_fdr	12	9	12	6	15	6	15	8	16	4
GATGGACCAATAAGAA	ref_1700_fdr	31	56	54	37	62	41	58	34	65	33
GTTATCCACAGTGTTA	ref_1700_fdr	1	1	3	0	0	2	2	4	1	2
ATTGGGATCAAAGTTC	ref_1700_fdr	47	63	62	46	51	44	55	33	64	35
CGCTCAGCTTCACACT	ref_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTTATTCCACTTG	ref_1700_fdr	21	14	24	20	20	13	12	24	22	16
CATGTCATTCTCGCGC	ref_1700_fdr	150	175	177	134	180	130	194	103	206	112
CTAGATGCCGGGTCAA	alt_3332_fdr	106	132	148	129	145	121	128	114	148	103
GCTGGTACGTGACCTC	alt_3332_fdr	4	3	2	1	6	2	2	5	3	8
TCTCCTCCCAGGGGCC	alt_3332_fdr	39	122	63	46	145	42	129	47	160	44
CAGTTCCAGATCCTAT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
CTATAAAGGGTCCCAC	ref_3332_fdr	13	13	21	16	20	22	22	18	19	12
CCAACTTGCATCGCTT	alt_3332_fdr	36	38	44	38	44	29	59	44	51	36
CCGGTTATATGGACAA	alt_3332_fdr	259	238	270	183	259	217	303	222	312	229
ATTAGGGCACGCCTAG	alt_3332_fdr	16	19	14	19	19	13	32	11	28	19
TACAGGTCCCAGATTT	alt_3332_fdr	69	83	98	92	111	84	86	71	87	81
GTAGAATGCATAGCTG	alt_3332_fdr	53	66	66	55	67	62	80	52	84	55
TGACCTCTTTGGCTTA	alt_3332_fdr	27	28	36	27	30	26	35	15	34	20
GAAGGAGAGACATGGC	alt_3332_fdr	24	34	41	21	36	29	27	25	34	18
ACTACGCGATTTAAGC	alt_3332_fdr	157	192	156	157	221	152	203	130	214	131
TTCTCCCTCTGGATGT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTCTGTCTTTTTG	alt_3332_fdr	66	79	100	86	93	67	92	73	72	71
GATGTCCCGAATATCT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAAGCACGAGAGT	alt_3332_fdr	42	60	50	39	45	44	41	46	36	39
ACCTACAGCGTACTGG	ref_3332_fdr	1	7	2	8	19	5	14	3	9	7
TCCGTTGAGCGGAATC	alt_3332_fdr	75	94	102	65	70	70	92	61	93	68
CGCACCTTAACGCTGA	alt_3332_fdr	97	154	134	122	136	100	147	91	207	93
AAGTCTTATGATGTTC	alt_3332_fdr	232	322	352	272	337	237	361	265	350	225
TGGAATCACGAATAAG	alt_3332_fdr	10	8	14	14	8	16	6	12	14	23
CTCCCCTAAGTTATGT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
GGTAACGGCATCAGAT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAAGAGGGCATTG	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGCCTGCAGAATT	alt_3332_fdr	17	35	27	21	31	27	39	19	31	21
AGGACCTTTAATAATT	alt_3332_fdr	9	7	13	8	10	9	12	10	11	7
AACAAATATTTTCTGA	alt_3332_fdr	8	11	16	13	5	9	10	9	13	3
GGATTCCTGTAGTCGG	alt_3332_fdr	146	205	167	157	184	150	185	140	207	142
GTACCCGTATTGTTTA	alt_3332_fdr	29	61	50	33	62	26	58	28	60	30
ACATCTGTAAATATGG	alt_3332_fdr	73	94	76	46	73	58	105	52	93	47
ATGAAACTACCTTCGG	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGCTCCCGGATGA	alt_3332_fdr	4	11	9	11	9	5	8	11	10	8
GAATCATATATTCTTC	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGATGAGCTCCAC	alt_3332_fdr	6	18	7	11	26	20	11	3	15	9
TGTGATGCGTGACCAT	alt_3332_fdr	40	66	73	46	54	42	62	43	47	38
TATGTCATAGGTCGCC	alt_3332_fdr	41	64	76	74	75	64	61	52	70	60
TTGGAAGATAAGGCCT	alt_3332_fdr	30	36	44	42	58	29	48	41	47	45
CTGTGCAAACTCCTCC	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
AGAAGACCGCTTAAGA	alt_3332_fdr	50	65	44	38	56	44	68	44	60	23
AATAGATCGTTTATAT	alt_3332_fdr	40	42	45	29	43	47	65	33	54	52
TCCCTTCATGCGTTGT	alt_3332_fdr	53	65	57	40	56	31	67	38	50	39
ACGGGGAGCCTATTTA	alt_3332_fdr	7	2	4	0	4	3	4	1	12	3
TCACGATATGCATGCC	alt_3332_fdr	139	251	173	199	270	118	284	156	274	130
TCCGGTATCCATGAAC	alt_3332_fdr	63	67	58	45	78	36	68	45	68	40
TCTACCAGGCATCGCG	alt_3332_fdr	3	9	4	3	8	4	13	1	17	3
TCGCTCGTTTTAGATA	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTTCTTTCCTCGA	alt_3332_fdr	40	61	59	53	63	34	65	34	55	32
GACTGGCTATATTGTT	alt_3332_fdr	31	40	41	29	30	30	30	31	28	19
ATGGGTTATAGGATCG	alt_3332_fdr	84	74	84	65	77	68	79	61	101	58
GTGGATTGGTCTATTG	alt_3332_fdr	54	93	73	59	101	58	88	64	82	69
TGTTATAATATTTTAC	alt_3332_fdr	1	0	2	0	1	2	0	2	0	0
AGCTCTGAACATCTAT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGTAGACTCTTAC	alt_3332_fdr	87	104	102	90	98	103	84	72	127	72
TCATCGACGTGTTTGG	alt_3332_fdr	2	6	5	4	6	2	19	2	6	4
ACTTTTGGCCTGCGGG	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
CGCGAAATGTGAACAA	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTGCAACAGGAGC	alt_3332_fdr	13	32	22	17	22	30	25	19	22	23
GACCAAATTCGATTGC	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAGTATAGCAGCT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
CATGCCCGGGCTCGAA	ref_3332_fdr	40	41	50	49	51	58	61	37	54	40
CTTGGACTATTCATGT	alt_3332_fdr	101	112	120	124	121	102	128	91	139	72
GATGCGGATAAACGCG	alt_3332_fdr	193	209	167	128	191	134	192	169	212	144
GCAACCCGTGGCGTTT	alt_3332_fdr	41	28	36	30	40	30	44	31	40	37
TTAACGGCATGAGGTT	alt_3332_fdr	23	35	49	33	43	22	33	33	26	25
GGGACAGGAGTTTGCG	alt_3332_fdr	8	13	27	12	12	11	14	5	12	10
ATCGAGCCTTGCGGGC	alt_3332_fdr	49	69	58	56	68	58	85	44	66	47
CTCATACCTCTATTAA	alt_3332_fdr	3	3	2	3	2	0	1	0	1	0
AAATTAACTTCCGAAC	alt_3332_fdr	38	53	55	68	48	51	47	46	64	37
GCGCGAAGATCACAGT	alt_3332_fdr	69	48	81	66	62	52	78	58	81	64
CAGCTTTCGTTTGCTT	alt_3332_fdr	75	74	76	75	66	63	63	59	65	59
CTCCATAGGTTGTCCC	alt_3332_fdr	11	17	9	7	17	13	29	14	20	20
CTGCGGTTGCTACGGT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
TCACGATAAGCATGCC	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
ATATATATTGTTTGGC	alt_3332_fdr	31	59	32	35	63	43	54	26	73	44
ACAGAGGGGTCACTAG	alt_3332_fdr	10	14	14	7	11	24	11	13	26	9
TGTTCCTTATTTCGAT	alt_3332_fdr	67	105	72	66	85	59	79	61	109	64
GTGGGTAACTGATCTG	alt_3332_fdr	25	32	22	32	30	34	17	10	44	22
ACGTGATTAGGTGAGG	alt_3332_fdr	22	21	24	18	38	21	23	12	19	20
AATGTGTTCTGATAGA	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTGAGCTCTGCGA	alt_3332_fdr	131	150	133	124	150	138	136	122	179	115
GAATGAGATTACGTCT	alt_3332_fdr	7	13	9	11	8	4	15	13	1	2
TTACTTGCACGGCCTA	ref_3332_fdr	9	38	15	10	32	6	33	10	32	13
TGGTCCTGCGGTGTGG	alt_3332_fdr	14	20	22	20	19	13	24	12	24	12
AGCCTCAAAGTGGAAG	alt_3332_fdr	8	11	10	7	13	4	12	7	9	16
GCATGCTGATACGTTA	alt_3332_fdr	81	80	78	84	81	55	89	65	88	89
CGTTATACATCGGGGA	alt_3332_fdr	73	69	92	67	72	71	97	76	98	65
CCCCATAAGTTTATCC	alt_3332_fdr	23	43	52	28	62	40	53	36	55	26
TCGGCTTAACCGGCCA	ref_3332_fdr	7	51	14	7	43	12	38	7	48	17
CGCAACATTATGCGTT	alt_3332_fdr	0	0	0	0	0	0	0	0	0	0
TTTGATCCACTCCAGA	alt_3332_fdr	15	15	10	14	17	8	22	10	19	4
TGTAACATGCCCATCA	alt_3332_fdr	18	33	33	19	25	18	38	14	33	22
CCGATTCGCGCCAGCC	alt_3332_fdr	175	211	249	168	205	180	217	190	207	165
GGCTACGTAGGCCATC	alt_3332_fdr	11	11	9	7	9	9	10	9	15	5
TTCCCAGTGCGCAGGG	alt_2029_fdr	139	42	162	154	52	124	29	102	34	123
TCATGAAGATATCCCA	alt_2029_fdr	66	16	111	96	23	94	19	74	26	68
AACTATTTGGCCGTTG	alt_2029_fdr	53	10	58	34	18	48	9	22	19	31
TAGACAATGCTCCTTT	alt_2029_fdr	70	32	86	76	19	67	25	63	26	41
TCCCCTACCTTATTTG	alt_2029_fdr	80	50	121	111	40	111	29	100	38	78
TGTATGGCACATGTAA	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
GCCCACAATGTTTGAA	alt_2029_fdr	206	42	294	204	81	190	72	183	57	218
ATATTCAGTCCCCAGT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGTAAAGTACGAA	alt_2029_fdr	151	42	196	181	48	148	49	157	45	121
TGTGGTAACCCCTACC	alt_2029_fdr	1355	332	1720	1512	364	1327	365	1287	328	1208
CGGGCGCTCGTACTAC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGATACCAGATTG	alt_2029_fdr	898	231	1086	997	260	863	248	911	252	809
GGTTACGAGTTGGGGC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTACACGCATCTC	alt_2029_fdr	202	49	218	216	45	188	72	133	54	184
CTCTATCAGAGACAGA	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
AGAACGAAAGAGCGGA	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TGATTTGCACCGATCT	alt_2029_fdr	8	3	7	12	1	7	2	7	4	9
CCACAACGCAGATGGT	alt_2029_fdr	214	79	280	236	103	251	84	227	98	185
AATGTCGACTCGATGT	ref_2029_fdr	102	36	154	138	34	121	36	114	29	107
GACGCCTATGTCTGAA	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCATAGCCCCGTG	alt_2029_fdr	323	93	360	405	97	302	107	332	96	300
TCCACGGTCAAGCGCG	alt_2029_fdr	6	4	8	6	1	2	1	3	2	8
CAACAGTTCTATAAAC	ref_2029_fdr	152	71	181	190	66	134	60	162	77	142
CTTTTGGCAAGTTAAG	alt_2029_fdr	95	22	108	93	24	76	20	93	33	62
TTTCGGATCAGTCGGC	alt_2029_fdr	174	50	247	216	51	180	47	162	73	176
TCACAGTGATCTATCC	alt_2029_fdr	101	36	113	117	38	104	31	130	42	97
TTTACTTGTGTCCCCT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCTGGCGCCGGT	alt_2029_fdr	42	8	44	44	4	42	9	35	5	41
TGTCGATCATATTCAA	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTAGCACGAAGAC	alt_2029_fdr	951	234	1074	1027	277	863	251	896	269	809
TTGTAATGTTTAATTC	alt_2029_fdr	3	0	2	4	1	0	1	2	2	4
ACATTTTGACTCGTGC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGCAATTATTCCC	alt_2029_fdr	28	9	35	25	11	18	9	16	7	15
TTGGGACTCAGTTACT	alt_2029_fdr	152	43	184	193	42	157	35	151	49	118
TCCCGCTATTCGTCAC	alt_2029_fdr	246	61	357	300	78	250	73	256	77	210
CTTCTTCGTCTGCTTT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
GACCGGAATGTGACAT	alt_2029_fdr	131	46	141	122	51	84	45	126	70	110
GAGACTGAATAGTTTT	alt_2029_fdr	723	222	895	746	205	715	258	664	243	645
CGGCTGAACGCTCCTC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGAAAAGTTCGGC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGATCTCTTTCGG	alt_2029_fdr	51	14	61	60	12	41	16	45	11	39
TCTAGTACCCTAACTT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
GTAGATTGATACCTAC	alt_2029_fdr	34	20	40	44	18	32	20	26	12	25
GGCGTACAGCACTTTT	alt_2029_fdr	74	20	70	84	13	61	16	70	11	66
ACGGGAGTGTCGCAGC	alt_2029_fdr	181	48	240	214	61	221	57	178	68	163
TTTAGAACGGACTCTA	alt_2029_fdr	179	60	252	205	63	189	54	167	50	164
GCGTCGCCATACGGAT	alt_2029_fdr	182	50	223	201	47	189	32	191	47	166
TCGTCGTTTTGGATAC	alt_2029_fdr	851	252	1012	861	234	785	263	779	263	658
TGTGGTAACCCCTAAC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
GCCGATGGGTGAGGCC	alt_2029_fdr	187	43	199	210	41	174	48	171	42	145
ATCTACCATCGTCTCT	alt_2029_fdr	102	23	138	95	27	97	41	82	21	78
CTGCGGAGTATTGGGG	alt_2029_fdr	64	20	68	82	17	62	16	57	15	50
GTTCCGATCATAACGC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
CGACGGAGTATAGTTC	alt_2029_fdr	105	42	138	112	32	104	23	93	29	77
TCGCACTGAAAAGTAT	alt_2029_fdr	192	63	228	214	55	164	43	166	64	153
CGAAGTACAAGCAAGC	alt_2029_fdr	11	6	19	25	1	8	2	20	0	12
AGGCCAGAGTTTCTGT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATTATGTCCTCT	alt_2029_fdr	80	12	75	52	22	60	18	55	11	56
GGATCCGTTTTATAAA	alt_2029_fdr	218	40	233	188	50	189	55	196	43	140
TCGTCAACGTTTATCT	alt_2029_fdr	287	82	377	349	67	277	91	280	85	238
TGTGGTACCCCCTACC	alt_2029_fdr	1	0	1	1	0	0	0	1	0	0
TGTACGGGATTTGCGG	alt_2029_fdr	379	112	520	451	114	387	124	428	128	338
CAAATTAGTTGCTCCC	alt_2029_fdr	278	86	258	236	103	237	73	228	66	228
ACTTCCTAAGGACCTT	alt_2029_fdr	194	57	232	229	48	167	60	186	55	175
TCATTCATGCCCTGTA	alt_2029_fdr	174	55	218	186	72	179	52	187	55	144
ACGTGCTAAACTAATA	alt_2029_fdr	98	36	156	125	28	104	46	79	23	120
TTAGCTTTCGGTCGTT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTCATCTGATCCA	alt_2029_fdr	6	1	12	4	0	3	1	8	4	5
ATCGGTGTTACTCTGC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGACTTAACCGGT	alt_2029_fdr	53	18	58	56	21	33	17	39	13	47
CGACCGGCTTATTGTA	alt_2029_fdr	28	9	34	27	5	30	11	40	9	26
TGGCTGCCCCATCCGG	alt_2029_fdr	120	33	113	101	20	95	35	105	35	79
TGATCATTTTGGCAGA	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGAGTGGTAGTAC	alt_2029_fdr	120	34	143	135	27	115	35	104	25	100
CTTGGCAGCGCCGCGG	alt_2029_fdr	81	11	69	73	18	74	22	86	29	53
TTACCTTTTCGCAACG	alt_2029_fdr	2	10	1	2	8	1	19	1	4	0
TAGCTCCGTAGTGTCC	alt_2029_fdr	151	65	176	164	74	133	48	145	63	105
TATACGGTGCGGTAAA	ref_2029_fdr	254	62	301	224	75	219	70	245	74	223
TCCTCAAGAATGTGCG	alt_2029_fdr	45	6	54	49	19	51	8	51	13	34
TGTCCTGGGGGATTTC	ref_2029_fdr	171	77	189	188	53	170	78	172	52	146
CGGTCTCTTCGTAGGC	alt_2029_fdr	58	16	38	38	14	44	30	40	33	35
TCGGTAGTAATTGCAG	alt_2029_fdr	131	39	151	141	38	117	35	116	44	141
GCCGGAGTAACTGGCT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
CATCAGTTAATAACTT	alt_2029_fdr	17	5	13	11	7	11	3	23	4	13
ACAGGCACCGTCCCGA	alt_2029_fdr	72	29	99	70	33	72	36	58	33	68
TTCCCGCATTCTGTGA	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCCAGCCATTTGT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATAGCCGTGAAAGGGG	alt_2029_fdr	289	73	323	324	95	258	87	286	85	259
CTTTACGCTCTGGCGA	alt_2029_fdr	120	29	142	128	27	119	34	122	30	113
CCCGGGAATACCTCAA	alt_2029_fdr	7	3	10	12	5	5	0	10	11	8
TCGTTCAGCCAATTAT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
GTCTACGATAATAGGG	alt_2029_fdr	50	10	53	34	10	49	13	42	17	26
AAATTTGCCTTTGAGT	alt_2029_fdr	125	35	177	125	30	116	30	106	38	106
GCTTGAACAAGTGCAA	alt_2029_fdr	58	17	77	54	13	61	15	57	14	57
TGCATACTGTGGGTTG	alt_2029_fdr	163	59	217	191	57	154	83	160	52	145
GGAACTCCCGAATTGT	alt_2029_fdr	26	6	35	33	10	28	10	25	12	21
GGATCTTGGACGTATC	alt_2029_fdr	145	41	188	162	60	136	50	142	39	131
TGCGCGTGGATTGAGA	alt_2029_fdr	155	47	141	153	57	136	43	114	29	141
AGTTGCGTATGTCCTA	alt_2029_fdr	239	86	308	242	69	225	61	219	73	179
CGCCACATTGTTGTTA	alt_2029_fdr	31	64	63	58	53	41	51	49	72	40
AAGCAATCGGTCCGGA	alt_2029_fdr	10	1	17	18	4	13	3	7	7	19
TACTGTCCAAGATTTG	alt_2029_fdr	97	19	127	112	42	108	39	113	29	101
ACGTACCTAGGTTCAT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTGATTAATACAC	alt_2029_fdr	14	2	17	12	3	10	7	12	2	7
GCTGTCTATTCCTAGT	alt_2029_fdr	66	27	98	120	28	88	31	92	35	88
TCACCATCTTCATAAG	ref_2029_fdr	90	43	126	140	31	93	40	80	59	96
TCCCATTCTAGTGGAA	alt_2029_fdr	60	14	76	57	10	47	13	51	30	35
TTTCCCGTAAGAGATC	alt_2029_fdr	61	14	59	54	11	40	22	37	12	43
TGCAGACCCAAATAAT	alt_2029_fdr	41	9	50	33	5	42	8	39	8	32
AGCTTTTCTCGTGCTT	alt_2029_fdr	44	13	62	35	11	41	11	47	11	41
TTTCATGTTGCCTTAA	alt_2029_fdr	333	88	428	342	90	310	96	330	112	304
TTGACTGTTATGAGGT	alt_2029_fdr	369	120	465	430	99	381	123	396	119	357
GACGGTGGTGATTTAT	alt_2029_fdr	119	27	146	125	26	109	38	113	35	118
ATTCCGGCTAGCGCCA	alt_2029_fdr	881	242	1099	876	228	785	230	803	221	798
CTATAAATCAATTGAT	alt_2029_fdr	145	21	133	147	25	147	36	139	25	105
CCTGTGACGAGCGCTG	alt_2029_fdr	246	76	316	290	78	265	75	218	87	239
ACCTGCCCTTAAGGGC	alt_2029_fdr	54	16	83	64	20	61	26	40	27	49
CTGTGTTGAATATTGT	alt_2029_fdr	18	3	24	6	5	13	5	9	7	12
CGAACACGGCACAGGG	alt_2029_fdr	429	116	573	487	111	473	126	414	134	452
ACGTATACACAGGGAC	ref_2029_fdr	201	44	201	180	43	174	46	143	50	151
TGCTGAGGCGCGCATT	alt_2029_fdr	58	10	71	65	11	74	15	39	16	60
GGTCCTTAGCTCGGTC	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
AAGACAGTCCGATGAC	alt_2029_fdr	160	49	203	184	61	159	51	195	55	178
TCGCCCTTTCTCGAGT	alt_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCTCTAGGCCCCT	alt_2029_fdr	10	4	23	16	3	10	1	8	2	19
TTACAGAGAGTTCTAC	ref_2029_fdr	450	147	530	483	111	400	112	428	152	378
ATACCCGCGGAAGACG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
TGATCAAGGTCCTTGC	ref_6009_new	0	0	0	0	0	0	0	0	0	0
GGTTCCACCATTATTT	ref_6009_new	9	9	34	15	19	29	11	20	7	23
GTTTGCGTTTTCCGGA	ref_6009_new	2	6	10	5	6	2	10	4	5	5
CCACACGAACCGACGT	ref_6009_new	13	13	18	18	22	10	18	15	17	8
ACTTGACTTCTCACCC	ref_6009_new	0	0	0	0	0	0	0	0	0	0
TCCTGGAACATCTCAC	ref_6009_new	7	9	12	12	18	10	19	7	12	2
CTTCCCGACCTCTACA	ref_6009_new	0	0	0	0	0	0	0	0	0	0
GTAGAAGCCGTCTCGA	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ACTAGATGGGCCTAAG	ref_6009_new	7	7	7	12	9	2	8	14	11	2
GGTTTTGGTTATCACG	ref_6009_new	27	48	32	32	46	30	39	32	49	27
TTGTGCATTGCCCTTC	ref_6009_new	9	35	21	16	29	27	30	17	28	18
GGACCCAGGCTGTGGT	ref_6009_new	29	57	31	29	26	30	51	23	51	23
CGTTTTGATTTAATTG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ATCAACTCTGACCTTC	ref_6009_new	5	17	11	5	12	8	12	3	12	3
CCTTCTCGACGACTAA	ref_6009_new	8	15	16	8	14	13	23	9	26	14
AATAGAACGAGAACTT	ref_6009_new	4	18	13	11	23	9	22	12	19	9
GAACTCGGTGGGGGGA	ref_6009_new	24	53	43	35	33	28	45	43	35	32
GTTCCGGTGGATAAGA	ref_6009_new	99	96	92	77	120	76	113	66	129	79
GCCATCAGCCAGCACT	ref_6009_new	40	46	54	40	77	54	82	44	67	45
GGCAGGTGAAAAGTTT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ATAGTCATGGGCCGCC	ref_6009_new	5	2	12	7	8	6	12	1	12	2
CCTTTTATAGGTCTTA	ref_6009_new	0	0	0	0	0	0	0	0	0	0
TTCATCTGTGTAGGTG	ref_6009_new	33	64	49	30	52	32	52	36	54	29
TGTGCAACAGCGACCT	ref_6009_new	30	74	40	36	65	31	68	40	72	25
GACGCGGACTCGCTTC	ref_6009_new	16	9	14	8	13	7	14	12	14	6
TTTAATATGTTCATCG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ACTTCTTTCAATCCAC	ref_6009_new	0	0	0	0	0	0	0	0	0	0
GGGGTTGATGGTGACT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
CGGTTTTCGAGACATC	alt_6009_new	76	168	100	68	132	81	132	83	153	50
CGGGGTTTCTTGCTTT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
CTCACTTGTTTCTGAT	ref_6009_new	4	10	4	3	1	1	4	4	4	3
AATTTTTTATTAATTT	ref_6009_new	41	40	37	29	55	35	45	42	44	29
AATACGTCAAACTCTG	ref_6009_new	6	14	10	9	11	13	16	12	18	14
TTTTGGGACAGACTGC	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ACACGGTCGGCTCTCC	ref_6009_new	64	147	73	64	194	56	192	77	201	59
ATAGTCAACCACCTGA	ref_6009_new	21	57	34	30	36	15	32	27	50	20
ATCCATATGTGCCTAC	ref_6009_new	10	4	8	7	10	3	8	7	13	4
TTTGCGAGACCCAACG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
CCATCTAACCTCTATC	ref_6009_new	8	5	12	6	22	1	31	0	16	3
ACTACCTTAATAAAAC	ref_6009_new	2	9	5	4	6	4	11	7	10	5
ACTGAGGCGCCTATGT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
TATCTATTTCGCCCTC	ref_6009_new	7	6	7	12	6	5	14	4	14	8
TCGATTCGTTCTTAAA	ref_6009_new	1	4	4	4	7	1	2	0	8	0
GGCCAAGCTGTTTTTG	ref_6009_new	10	28	23	18	30	11	26	11	22	12
CATCTTGCCTTTTTAC	ref_6009_new	52	54	45	48	46	44	55	45	60	50
CGCTATATTCTATGCG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
CTTGAGCCCTTGTCAC	ref_6009_new	0	0	0	0	0	0	0	0	0	0
GGAAACGCCCGCACTT	ref_6009_new	136	188	170	152	210	149	214	134	245	128
GTTGCCCCTGACCGAA	ref_6009_new	0	0	0	0	0	0	0	0	0	0
CGTCAATGGCTCCCGT	ref_6009_new	18	18	18	19	36	16	26	11	32	18
GTCAATTAAACGGGAT	ref_6009_new	30	53	42	44	70	41	71	47	45	41
AAATGACGTATGCGCT	ref_6009_new	3	2	10	3	2	4	8	4	9	2
GGTGTCATAGGGTTCT	ref_6009_new	9	4	8	3	4	5	10	3	5	2
CGCTCTGGACGGCCCC	alt_6009_new	20	25	23	13	23	20	24	29	30	7
CAGGCCCATCCCTAAT	ref_6009_new	44	93	38	43	86	40	118	55	126	39
ATTCACGAGTCTCTTT	ref_6009_new	13	12	16	19	12	8	27	11	23	13
GCCAATGTTAACTATT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
GCAACAGAAGTCTCAT	ref_6009_new	175	293	234	200	304	171	333	166	289	191
CGCCGCTGTACAACTG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
CCTTCAGTACGGAAAC	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ATCCGCTCATATATTT	alt_6009_new	16	21	11	13	17	11	13	8	11	15
CCGAGATTTGTTCATC	ref_6009_new	2	9	1	2	12	6	11	6	17	6
GATTCATTTCGAGTAG	ref_6009_new	63	54	66	50	76	40	78	51	87	54
CTGCCTTCAAATGGTG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
TAGTTACCACGTAGAG	ref_6009_new	10	14	16	7	23	9	15	12	19	12
CAGCCCCAGGACAAGT	ref_6009_new	6	5	10	3	7	6	10	6	6	7
ACTCGGCCAATCATTC	ref_6009_new	45	86	45	62	74	57	83	35	116	46
TTGTCCTCTTGCCCGA	ref_6009_new	10	9	5	3	6	10	4	3	8	6
GGTTATGAAATTAAAC	ref_6009_new	15	25	20	17	32	22	22	35	27	17
ACGATCTGCCCTAAGA	ref_6009_new	0	3	3	1	3	3	3	1	5	4
GGGTACTTTTACTGAC	ref_6009_new	20	18	10	11	19	10	16	11	16	16
TCCATGTCTTTTGCAT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
AAGCGGCTTAATGTTC	ref_6009_new	0	0	0	0	0	0	0	0	0	0
CGTCTTATTTATATGA	ref_6009_new	49	77	57	67	87	64	76	46	76	42
TCGTAACCAGGTACGT	ref_6009_new	6	11	11	12	14	6	9	7	20	11
CTTGTGTGTGTAGTGT	ref_6009_new	29	90	46	51	86	31	68	32	75	31
ATCGATTGCACTACTA	ref_6009_new	5	11	14	11	14	9	19	10	30	15
ACGCGAGGCGTCGAAG	ref_6009_new	9	41	24	23	20	21	25	17	27	11
GTTTTTTCGACGAGTA	ref_6009_new	0	0	0	0	0	0	0	0	0	0
GGAATGATTATTTTAC	ref_6009_new	28	49	29	27	40	26	29	21	45	23
ACTAGCGACCAGATGG	ref_6009_new	16	27	18	12	22	17	15	14	19	10
TTGCAGTTCCATCACA	ref_6009_new	44	71	46	42	79	37	79	36	89	29
CTGTCAGAGTCAGGTT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
GCAACTTCTGTTGTTA	ref_6009_new	7	16	15	14	14	14	18	13	17	5
CGTGTGAATGATATGT	ref_6009_new	14	6	17	4	11	6	17	9	20	13
TGCGTTGGATCTGATA	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ATCGTTCCAGAAGTCT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
ATTTCCTGTGTAGGTT	ref_6009_new	4	1	4	1	4	2	3	2	2	6
CGAAGTACTGCACATA	ref_6009_new	33	66	41	32	65	30	52	25	64	32
ATTCAGCTCGGCACTA	ref_6009_new	60	62	49	42	72	38	67	39	62	37
GCGATTGCACCAGTGA	ref_6009_new	0	0	0	0	0	0	0	0	0	0
AGTCGTAGCTTTGGCG	ref_6009_new	0	0	0	0	0	0	0	0	0	0
AAACCCTAATGTGAAT	ref_6009_new	31	39	29	30	50	23	43	42	55	30
GTGGGTCAGTCCTGGT	ref_6009_new	0	0	0	0	0	0	0	0	0	0
TATTGTAGAGGGTAGA	alt_2011_reverse	11	3	7	11	4	7	5	4	9	6
AGCACAGTTCACCACT	alt_2011_reverse	12	6	24	9	5	30	10	16	11	14
GCACACCCCCCAAGCT	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGTGTATAGTCCA	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
TGCCTTGTCTACCTCG	alt_2011_reverse	39	33	50	44	38	46	41	51	38	32
TCTTCTTTGTTCGGGA	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
TGACTTGCCGCGTACC	alt_2011_reverse	52	38	56	60	42	42	43	66	44	58
CGCGCATTCCGAATTG	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCTGAAGCGATCC	alt_2011_reverse	74	27	85	81	32	77	32	78	43	61
ACCCCAGATACCGCCC	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
CAAGGCTCCAGTGTGC	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
GAATCTTATGCGTCTC	alt_2011_reverse	127	78	146	137	69	121	74	113	76	109
TACATTAGCCCCTATA	alt_2011_reverse	60	55	80	54	49	45	39	62	39	52
GACCATATAGTCGCAT	alt_2011_reverse	267	161	308	250	160	252	186	209	194	262
ATAGACAATCAAGGCT	ref_2011_reverse	57	40	57	64	48	74	38	77	25	54
CAGAACCCGCATCTGT	alt_2011_reverse	109	56	102	88	46	73	54	101	66	80
AATGTCTTCTCACTTC	alt_2011_reverse	97	55	109	109	47	84	61	86	35	93
TCCCTTCGTAAATCCG	alt_2011_reverse	46	14	31	35	22	31	20	41	20	20
GTCATGCATTCTTATT	alt_2011_reverse	8	7	22	16	17	17	6	12	4	5
ACCTAAAAGAGCCGCT	alt_2011_reverse	31	27	70	56	32	41	31	40	30	35
AAGCGCTGTTATTGCC	alt_2011_reverse	54	32	47	47	38	50	36	51	35	37
CGCAAGTCCAGTCGCC	alt_2011_reverse	168	108	192	178	103	160	95	142	102	145
CTCAAAGAGTTCGACC	ref_2011_reverse	157	104	180	176	127	158	119	142	127	128
AGGCAACAGTTTATTG	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTGGTGTTCGTGT	alt_2011_reverse	26	19	40	25	22	33	24	25	30	31
TCTCACCCTCAACCAT	alt_2011_reverse	15	21	20	23	20	19	23	22	23	16
CTTTTGTCTTGGGTAT	alt_2011_reverse	56	38	43	61	49	49	47	50	46	36
TATTCACTTCGGCATG	alt_2011_reverse	278	156	318	292	130	253	141	246	167	246
TCCTCCATCAGTGTGA	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTGGGCATTTGTC	alt_2011_reverse	60	28	51	65	37	63	37	50	41	44
CTTCGGATGTCTTTTA	alt_2011_reverse	94	71	96	106	69	110	75	115	75	84
AAAGTAACGCCGAGTC	alt_2011_reverse	7	4	8	8	1	8	5	12	4	8
GTCTCCTCTTCCAATC	ref_2011_reverse	274	188	349	318	233	302	235	261	252	292
TGGTACGGATATCAAA	ref_2011_reverse	122	81	139	114	66	101	64	123	90	107
TTCCCTCAAGGGCGGA	alt_2011_reverse	37	22	51	43	17	35	22	43	23	24
CGGTTTATGGATACTG	alt_2011_reverse	10	5	8	8	4	4	3	6	2	9
TTGCTACCTTTCGTTT	alt_2011_reverse	6	1	6	3	1	4	4	3	3	6
AAACTTCTCACCTCCC	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
GCAGACTGCTGGCTAC	alt_2011_reverse	8	6	16	17	2	5	8	6	8	12
TTTCTGTTATCACCTC	alt_2011_reverse	132	81	204	156	63	157	89	103	92	134
TTCAGTTTCACCTCCG	alt_2011_reverse	12	10	6	5	6	7	8	4	12	4
TTAACTCTTGCCAGTG	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
GCATACCCGCTGTTGT	alt_2011_reverse	114	82	126	113	74	101	73	96	86	83
TCGGGATGCCAACACC	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGGCCCGCCGGTC	alt_2011_reverse	76	36	93	84	38	79	37	65	42	62
GGTGGGTTTTTTGTCT	alt_2011_reverse	25	7	27	31	11	19	11	13	7	17
TGGGATTGTGACTGTA	alt_2011_reverse	119	88	135	150	79	115	75	96	105	102
CCGGAATATTTTCATT	alt_2011_reverse	3	3	5	6	2	6	5	5	4	4
GTGGTGAATCGGCCAT	alt_2011_reverse	19	17	26	17	12	20	22	24	11	14
ACCGTCTTTCAAGCTT	alt_2011_reverse	24	14	16	29	19	22	13	19	18	15
CTCGTTTTTTTGTAAA	alt_2011_reverse	53	30	84	71	52	53	35	49	49	71
CCAGCAGCCGGTTCTC	alt_2011_reverse	1	3	4	5	5	5	7	4	5	1
GTCTTTATTAATGACA	alt_2011_reverse	87	50	97	83	52	85	43	80	58	93
GGTAGCTGGTTCGGTG	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACGTTCGCCAAC	alt_2011_reverse	87	69	115	113	58	83	68	96	60	96
GTCTCTAATAATTCGC	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
GTCTACCGCCAACCAT	alt_2011_reverse	65	55	94	79	48	67	60	88	52	68
GGTAGATGGAGGTATG	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
TATTAATGGGTGCCAT	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGGTTTCATTTTT	alt_2011_reverse	22	56	45	36	56	30	63	34	66	41
AGCCACGCAGACCCCG	ref_2011_reverse	28	32	32	30	17	27	42	28	44	30
TCTGTCTGTGACCTTT	alt_2011_reverse	80	69	131	92	60	97	60	103	59	100
TCGTGCACGTCACTTT	alt_2011_reverse	48	33	68	55	36	43	32	53	32	54
TTTGTAAGCCGATATC	alt_2011_reverse	37	12	27	32	19	33	20	38	14	34
GGCAGTGGTAAGTTAG	alt_2011_reverse	8	6	10	11	6	13	7	11	6	13
AACTCAGCGAAGTCTC	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
CTGATCTTTTTGATAG	alt_2011_reverse	35	17	29	38	22	28	26	27	18	32
GCTGTCTGGCTTTCAC	alt_2011_reverse	18	13	35	31	11	26	19	32	18	21
TTTATCGCCTGGCCCC	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
GGCAATCTGCGTACGT	alt_2011_reverse	17	11	17	17	8	22	9	15	11	8
TTAATTTTAGTTTCCG	alt_2011_reverse	56	25	76	63	39	55	34	63	39	50
ACCGCGATGCATAGTA	alt_2011_reverse	110	70	134	110	63	108	65	100	81	96
TGAGTATACGCAATGT	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
ACACATCTAGTAAGGT	alt_2011_reverse	32	26	46	24	34	49	24	26	25	32
ACTTATCATGGCCTTA	alt_2011_reverse	6	13	10	2	14	3	14	5	14	9
GGAAAAGAATTCGACT	alt_2011_reverse	19	11	17	30	8	18	10	29	21	20
TTGCCTCAGTACACTT	alt_2011_reverse	31	37	41	40	51	27	30	37	43	19
CATATCCTGTACGCTA	alt_2011_reverse	2	6	14	7	5	2	6	5	5	3
GTCGTGTGTCCCAACT	alt_2011_reverse	0	0	0	0	0	0	0	0	0	0
TTCCAAATTCGAGGAA	ref_2011_reverse	392	249	449	465	261	394	306	384	310	397
TCTAATGACACAACTG	alt_2011_reverse	54	35	74	52	43	53	51	54	32	39
TTCCCTGATGCTAGTT	alt_2011_reverse	137	113	164	160	108	136	123	153	126	142
TTATGATTGATTGAAC	alt_2011_reverse	52	40	53	57	39	39	25	37	30	39
AAGGGGTCCTGGGCTG	ref_2011_reverse	46	21	48	58	29	59	39	54	43	56
TTAGTAGCAAAGGTAG	alt_2011_reverse	86	69	122	82	53	79	47	84	68	75
CGTAAGGGTAGCATCT	alt_6026_new	1	1	2	2	6	3	3	2	4	1
GTAACGTCTAACATAA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CGCCCTAATAGAGCGG	alt_6026_new	7	13	22	13	20	15	20	14	22	14
ATTTGTTAGCATCTGG	alt_6026_new	11	15	12	10	16	8	29	7	8	4
GTTAGAGACATTGTTA	alt_6026_new	2	1	4	3	1	0	0	0	1	0
CCTCTTATATTCCGCT	alt_6026_new	8	12	11	9	16	8	14	7	14	8
CTTTTGGTTGAAATGT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GTCAGAGATCTACCTC	alt_6026_new	31	50	27	26	40	25	51	14	58	22
CGTAATGCTAACACTA	alt_6026_new	49	63	57	46	64	41	74	44	85	50
GTGCTATTGACGTATG	alt_6026_new	1	0	1	0	0	0	0	1	2	0
TTTTACAGCGCGGTGG	alt_6026_new	21	30	39	21	37	23	32	15	32	35
ATCAATAGGCTGAACA	alt_6026_new	26	38	33	36	26	26	39	27	45	18
ATCGATTCTTGTTCTC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CCAGCTCCCGGTACAT	alt_6026_new	2	14	0	6	38	1	31	1	33	3
CTGTCTTTCACACTTT	alt_6026_new	12	28	8	12	20	17	19	13	14	9
CGACCTCGGTGGTGCG	alt_6026_new	11	29	15	13	14	12	31	13	23	15
GTAAGACTCACCGAAG	alt_6026_new	6	13	8	8	7	2	16	7	17	4
TCGGAATAGTACTTCC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TCATGTCTGCTTTCCT	alt_6026_new	12	26	19	17	15	14	24	19	20	16
ATATTAGCATGCTGTA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
ACAAGCGAGGTCATTT	alt_6026_new	18	43	35	26	32	22	45	18	44	13
CACTGTGCCTGTGATT	alt_6026_new	11	46	15	10	59	12	51	8	30	16
TTGTACGCGATGGGGG	alt_6026_new	28	35	27	18	44	19	42	29	31	15
AACGCAATTTAAAGGC	alt_6026_new	27	46	33	38	35	35	59	25	42	28
CCACCTACGGTCTGAG	alt_6026_new	21	49	37	26	66	25	78	18	57	22
GAGACGTTTTTAATAC	alt_6026_new	6	9	12	10	14	15	11	4	13	4
TGGAGAGGAGCTGGGC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CTTACTCAAACCTCTC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GCGGTTTTACGGTATT	alt_6026_new	7	2	1	1	10	1	6	2	10	3
TGTATAATAGTCCACT	alt_6026_new	14	26	19	19	21	17	27	10	27	10
TCAGTTTGCTGTTTTG	alt_6026_new	4	13	4	6	7	8	6	4	13	1
ACTACACTCATTAATG	alt_6026_new	20	41	22	14	38	16	43	16	40	20
AGGCGGCTCCTTCCTT	alt_6026_new	4	5	9	6	9	5	9	1	7	3
GTGTTGCACCGATATT	alt_6026_new	5	15	8	9	8	8	8	6	9	10
ATTTGGGCCTGCGTCC	alt_6026_new	110	120	111	107	143	89	151	89	148	98
ATGTACGAATGGCACA	alt_6026_new	5	5	4	4	14	5	5	2	8	3
AAGACCGAAGTTCCTT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CCTTAGGCGACCTCAC	alt_6026_new	16	19	14	5	9	14	12	12	17	3
GTTCTACCAGCGTATT	alt_6026_new	6	10	16	14	14	13	22	9	12	14
TTTATCGCGTAGTCAA	alt_6026_new	14	36	28	11	35	20	17	11	28	11
TGCGAGTGTATTAGAT	alt_6026_new	23	41	27	22	35	31	43	14	44	19
TGGCGCGTTATCGATT	alt_6026_new	19	30	28	25	50	22	37	22	40	25
TAAGGTATATCTTTCT	alt_6026_new	27	38	40	20	43	22	40	24	47	22
TCATGTTGTATATTGT	alt_6026_new	114	192	170	132	150	111	203	96	224	103
TATCCCTAATAAAGGC	alt_6026_new	12	32	12	12	17	3	18	9	19	10
TGGCCATGTGTGCCTA	alt_6026_new	3	5	2	3	5	3	7	3	1	0
TTCCTTCTCAGTTTTT	alt_6026_new	45	51	54	35	62	33	42	37	55	33
CCATCGAAATTACGGT	alt_6026_new	9	119	30	22	104	30	98	19	104	19
CCTCACTTCCTTGGAT	alt_6026_new	16	15	21	12	32	12	23	17	28	15
TTTTACACCGGTTTCT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GATTCATAACCTCGCG	alt_6026_new	4	5	11	13	13	10	9	6	11	7
CCAATTCCATATCATA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TGTCTATTGTATGTAG	alt_6026_new	68	144	75	50	103	45	111	56	141	68
CGCCTACTTATACTCG	alt_6026_new	24	48	29	35	72	18	58	27	48	24
TTGCTGGTCTTACATT	alt_6026_new	1	1	0	1	1	0	6	2	0	1
CTTTGTACTTAATAAT	alt_6026_new	8	6	10	8	12	2	6	5	14	5
GGTCAGGCTTGACTAG	alt_6026_new	21	29	16	14	23	18	24	16	17	16
GTTCAACTGGTTAAGT	alt_6026_new	43	70	44	30	48	39	66	26	58	18
ATAGTCATAATTACTC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
AACTGCTGCTTATGCA	alt_6026_new	72	110	78	69	130	98	115	68	141	76
CGGCGGTACTGGATGA	alt_6026_new	21	46	36	19	38	20	40	22	43	24
CTCTGGCTTCGTTCGG	alt_6026_new	0	0	0	0	0	0	0	0	0	0
ACACCGCTACGCTGCA	alt_6026_new	15	18	9	13	13	14	18	9	18	11
AGTTTGAAAGTATTGG	alt_6026_new	3	4	1	2	7	5	3	5	5	7
TTTTATCGGCGGGACG	ref_6026_new	65	117	88	59	130	66	137	62	100	65
CTTGCCGGACAGTCTA	alt_6026_new	7	20	11	6	24	7	28	11	21	11
CGATAATTATTGCGTC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
AGCTCGCTTTTCGGTT	alt_6026_new	34	44	42	36	53	23	37	20	52	25
CGATTGGGTTATAGTG	alt_6026_new	153	279	205	160	281	163	293	165	262	134
GAAACAGGGATGCCAA	alt_6026_new	7	26	17	5	13	11	12	9	15	16
GCACAGGGCTGGCCTC	alt_6026_new	32	42	32	31	42	37	46	16	56	26
TTGTGGTTTGTAGGAT	alt_6026_new	13	20	10	7	19	13	20	9	17	9
CCACTCTCTCACCAAA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TGGGCCCAAGTTGGGG	alt_6026_new	10	26	21	15	26	10	31	16	35	12
GGATGCCTCCCTTAGT	alt_6026_new	15	25	18	12	29	16	24	12	27	22
TTTTCTGCTCATTGGG	alt_6026_new	1	7	3	3	2	0	5	3	5	1
TACCATACTCTCCGCA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TTTGCGTCCCTCTGCG	alt_6026_new	38	47	38	39	50	26	42	24	73	26
CTTGTGGCCGAACCCT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GTTACGCCTACTGACT	alt_6026_new	17	22	11	7	22	11	18	9	20	19
ATTATCCGTACGGTCG	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GTGGATTCAACACTCA	alt_6026_new	0	0	1	0	0	0	0	1	0	0
GCCAACCAGTGGATTA	ref_6026_new	2	17	4	5	29	9	27	10	26	6
GGGCGTGCGGATTATG	alt_6026_new	19	31	30	14	32	10	20	14	26	12
GGGTCTTCCGCGGCCC	alt_6026_new	62	73	68	43	98	69	90	54	97	51
GTACGTTGAGCGTGTA	alt_6026_new	9	15	5	3	7	10	18	8	15	7
CAACGTCACCGACGTC	alt_6026_new	39	49	40	24	62	29	66	22	56	33
ATACGAGATAAAAATT	alt_6026_new	1	0	1	4	3	0	1	0	1	2
CTAGACCGCCCGCTCC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GGCGGGTAGTGTATAA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
ACTTAGCATCTTGCCT	alt_6026_new	0	8	7	4	25	4	12	9	13	8
GAATGCCTAAATTACG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TTGCCACCAGAAAGTT	alt_6026_new	12	24	19	17	35	11	28	11	34	11
CGTATGGTTTTGGTTG	alt_6026_new	124	188	103	88	166	127	162	108	170	109
AAGACTCTTTTACCCG	alt_6026_new	5	8	6	10	10	2	15	3	15	4
TGAATGTCTACTATTT	alt_6026_new	40	38	36	33	44	30	51	16	37	25
CTTCTTTACCGGTCTG	alt_6026_new	18	52	34	29	41	29	65	29	40	20
ATTATGCCGCCGTTTA	alt_6026_new	28	45	39	40	43	32	42	20	43	25
CCAATTCCCGGGGGAG	alt_6026_new	27	42	42	30	44	22	35	31	42	28
TTTGCCTATTCCGATC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GGTAGGTTTAAAAACA	alt_6026_new	6	14	9	4	12	6	11	8	7	4
ATCATCCGTTCTAAGA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CTTTATTAGTGATGTA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GGGTTGTCTGCTCTCA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CTGGGGAGCCTACATT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TCATGATTTTTGCCTT	alt_6026_new	16	17	14	17	17	23	23	15	19	11
ATAACCGATTGTTTCT	alt_6026_new	8	4	4	9	7	3	10	7	15	4
TCAGAGTTCGAATGGT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CGCCACTGTCACGTAC	alt_6026_new	18	111	20	29	94	22	98	14	98	11
AATTGGGCTAATGTGC	ref_6026_new	4	7	12	11	11	2	4	2	16	3
TAGCCATTACAGGATA	alt_6026_new	58	77	78	55	98	44	88	59	104	54
AAGTAGTCGATTCTTC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
AGTTTTGTCTACGCCA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CCCGTTGACATCGCGT	alt_6026_new	10	18	13	12	17	5	22	5	20	9
GGGGCCGAGTTTTCCA	alt_6026_new	7	8	6	7	9	6	7	4	13	8
CACGACCTAATGCGTT	alt_6026_new	7	19	8	7	12	8	26	10	10	7
TCTTATTTCAGTGGTG	alt_6026_new	29	48	28	27	59	18	47	27	58	37
TCTACTTTGTTAGGTG	alt_6026_new	0	0	0	0	0	0	0	0	0	0
ATACCTGGGCCGCTGT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
CATCCGGTTTCAATGC	alt_6026_new	6	26	10	8	17	7	21	7	14	6
ATTCGCACATAGGCTT	alt_6026_new	49	72	57	53	88	50	73	46	70	51
ATTTTCACAACGGTAG	alt_6026_new	2	3	0	2	2	2	4	4	2	0
GCATTTTCCATATTGC	ref_6026_new	9	16	6	9	17	8	14	9	19	7
GCGAAGGACGCAACTC	alt_6026_new	25	38	35	40	37	18	42	23	54	28
ATTTATTTTGTAATCG	alt_6026_new	31	29	30	31	35	21	29	25	37	25
CACGCTCTCTTCTTTG	alt_6026_new	24	31	25	19	32	22	31	17	26	18
ATCCAATCAATTGTCT	alt_6026_new	16	21	10	17	32	18	16	10	20	13
TATTATGAAGGACGAA	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TGACCTACTATACGCT	alt_6026_new	18	35	23	14	37	18	45	15	23	16
AATGATGGGCGTATGT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TCGATTTTTCTTGACC	alt_6026_new	13	29	20	12	25	7	17	11	29	9
TCGTCGTTTTGGCGAC	alt_6026_new	12	15	18	18	23	15	8	10	23	16
TGGGCTAGAGAGTAGC	alt_6026_new	14	12	15	15	16	6	25	17	30	23
TGGGTATACGCCTGGC	alt_6026_new	41	74	39	44	56	30	66	26	63	36
TAGTCAAACTCGTTGC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GAACCAATTCTTGACC	alt_6026_new	0	0	0	0	0	0	0	0	0	0
ACCGCTTCCTCCAGTC	alt_6026_new	14	27	15	14	26	10	39	16	33	2
TAAGGCTCGTTTCTTA	alt_6026_new	39	40	53	42	35	27	53	38	46	28
TGAGTGGGTACCTATG	alt_6026_new	0	0	0	0	0	0	0	0	0	0
GGTGCCCTAGCACCCT	alt_6026_new	22	34	17	16	18	13	29	12	22	13
ACTGATTCCCAGCCAT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TCATATAATTTGTGAA	alt_6026_new	13	21	15	3	14	5	27	9	31	7
TTACAGTATACTGGTG	alt_6026_new	16	26	13	12	26	20	24	8	24	14
AACTTATCAAGATTAG	alt_6026_new	27	27	18	11	18	4	22	12	27	16
TTATCCTTCGAGTTAC	alt_6026_new	5	8	8	9	11	9	17	12	14	3
ACAGAACGATATGGAT	alt_6026_new	4	7	9	6	2	1	4	5	6	3
CTTTCTTTGGTAAGTA	alt_6026_new	11	20	6	10	18	7	12	9	18	10
GTCTCCGCGGCGCGAT	alt_6026_new	56	129	82	69	111	70	117	86	117	54
GGAGCACGTCTTGTCT	alt_6026_new	0	0	0	0	0	0	0	0	0	0
TAGGCCTTCTCGCACA	alt_6026_new	21	53	48	40	66	30	44	20	65	36
ATCAGTTAGTGGTCAC	alt_6026_new	1	1	4	3	8	5	6	3	9	2
TGTGTCAAGGTTTACG	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCTCGTTTGCTAC	ref_829_fdr	16	27	11	15	18	14	23	13	24	11
TATCATGACTACCTTT	alt_829_fdr	134	113	176	123	88	120	129	147	91	128
TACACTGCTCCTCGGC	alt_829_fdr	19	40	18	21	40	18	34	23	43	16
CCAAAGGTCGTCGTGT	alt_829_fdr	62	65	80	55	56	42	72	46	79	58
TGATGTGCTATCTTTA	alt_829_fdr	19	19	19	21	8	20	10	28	14	9
AATGTCCGCCCTTGGT	alt_829_fdr	8	16	26	21	23	22	13	18	23	14
CCGCAGTCGATACGTT	alt_829_fdr	11	38	27	20	33	18	45	16	45	8
TTATCTCCCCACTCTA	alt_829_fdr	20	49	29	27	54	17	52	16	47	18
CACCACCCAGTGCTTA	alt_829_fdr	25	42	26	24	35	24	54	24	41	25
TCTGATGGTTGTAAGC	alt_829_fdr	13	10	12	18	15	15	13	16	12	14
GTAATGCTCGAGTTGA	alt_829_fdr	9	8	4	5	4	3	6	7	7	3
TTTCTTCGATATATTT	alt_829_fdr	23	16	30	28	16	21	29	17	18	18
TGGGTCACACTGGCGG	alt_829_fdr	5	11	8	6	7	14	4	10	4	3
GGTCGTCACTTCGACG	alt_829_fdr	178	170	198	198	159	143	158	136	165	133
CCTCTTTCCTTCTCGC	alt_829_fdr	6	6	8	5	12	3	9	13	11	4
CGGCCCGTATTTAATG	alt_829_fdr	4	7	18	9	4	6	10	12	7	5
CGCCCTTTCAATCGTT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTCTTTTACATT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
ACATCAAGGTCTGGGT	ref_829_fdr	37	60	49	42	67	46	45	37	63	45
CGTCAATGTTTACTCT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTACATTGAAGTC	alt_829_fdr	72	72	85	79	59	60	78	78	67	72
ACTGGAACTTTGTCTT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TTATCTCCGTGGACTT	alt_829_fdr	77	59	69	67	56	77	70	41	83	58
TGTGTGCTGAGAGCGG	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
CATCATACAGGTGCTT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGTACGGAGGTG	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTGTCCTGTTAAA	alt_829_fdr	39	43	53	37	42	27	51	31	42	40
GCTTCCTAAACAACCA	alt_829_fdr	77	80	135	100	92	96	94	90	91	82
CATCGGAAGACCTTTT	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
TTGCAAGGTAATAACG	alt_829_fdr	6	9	19	6	10	11	10	9	14	5
GTAATTGCTACGGCAG	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGCGCTGTAGTGT	alt_829_fdr	194	314	271	242	326	210	321	198	371	181
GCTGGACCTAGATGGC	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
CTGGATGCGATTTTGC	alt_829_fdr	36	32	27	29	48	21	43	37	29	28
TACTCAATCGTTCCAC	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
CCAAAGGTCGTCGTAT	alt_829_fdr	11	5	10	10	5	6	7	8	10	8
ACCGTACAACAACTGA	alt_829_fdr	329	365	368	318	359	309	335	293	374	306
CCATCACTGGTCAGTT	alt_829_fdr	26	18	29	16	19	27	36	32	30	24
GTGATAAATGCGTGTG	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
GGAAACAATCGATCCA	ref_829_fdr	144	100	162	116	129	127	128	119	117	119
GGTATATTGGCCCTCT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTTGGCTGAAAGC	ref_829_fdr	5	9	10	5	11	4	7	7	15	7
GCCTATTCCATCAACC	alt_829_fdr	73	67	101	83	91	84	81	69	84	102
ATAGGCCCAACTTCAA	alt_829_fdr	8	4	8	4	4	5	1	3	6	3
CATTGTAAGGCTCTTG	alt_829_fdr	8	4	7	3	8	6	2	7	11	5
ATTTCCCATACCAGCT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTCCGCTTTTTTC	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTGCGTGCATGGC	alt_829_fdr	19	18	18	11	18	16	27	3	21	16
GGGACCATCCTTATTC	alt_829_fdr	8	5	9	5	8	10	4	9	8	10
TAGTTAAATATCGTTT	alt_829_fdr	22	22	33	31	31	21	30	25	32	24
GTGTCGTCCCTTTTCA	alt_829_fdr	32	39	42	46	36	32	27	28	14	23
TATCGGCAGTATACTG	alt_829_fdr	25	30	45	33	29	21	25	29	38	30
ATACTACGTTAGATTT	alt_829_fdr	3	1	5	2	0	3	1	0	5	0
CATTGCCACTCTGCGT	alt_829_fdr	9	5	5	2	10	11	4	8	5	12
TCGCCCTAGGGGAAGG	alt_829_fdr	72	63	95	66	73	55	56	65	74	57
TCCCTTACCTGGTATA	alt_829_fdr	9	15	21	9	28	11	20	8	28	13
CATTGCCACTCTGCTT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TCATTGGCTAAGTCTG	alt_829_fdr	27	32	36	53	36	32	33	37	35	33
TTTGCATGCACCATGT	alt_829_fdr	19	36	36	30	38	32	34	36	27	31
AAAGATTTTTCGTCTT	alt_829_fdr	56	38	55	41	45	39	48	53	53	38
CCTATAGGATCTGTTT	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAGACTCTTATGA	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTGGTATCGTTG	alt_829_fdr	70	64	110	73	89	91	100	89	92	83
GTTATTATCTAGGTGC	alt_829_fdr	27	19	47	24	26	28	29	24	31	20
CAATTCTTAGTTTCAT	ref_829_fdr	28	37	25	27	31	21	21	28	31	19
AGTTATGTTATCCCTG	alt_829_fdr	28	32	28	24	26	33	32	23	20	23
TTGTGGTTACTATCTG	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
GGGCACTGTTCCACTG	ref_829_fdr	61	86	73	59	90	56	91	38	86	76
ACCATCCCACTGTTTC	alt_829_fdr	25	33	37	29	36	26	51	24	48	26
TGATGGTATCAGCTTC	alt_829_fdr	0	0	0	0	0	0	0	0	0	0
CGGGACGTCCGGAATT	alt_829_fdr	20	18	20	9	28	20	23	16	18	14
GAAATGGTCTCGCGAC	alt_3682_missing	27	18	28	23	29	25	40	15	33	13
AATTCCCGATGCCACA	alt_3682_missing	7	12	9	4	13	4	13	6	11	4
GGGTTTGGTAACCACA	ref_3682_missing	77	120	103	83	119	60	129	75	158	78
AAAGGGTCAGGCTCCG	alt_3682_missing	7	17	18	13	15	10	11	7	9	7
GTGAACTGAACGGTCC	alt_3682_missing	47	55	61	44	82	41	78	51	75	41
TCGGAATTCCAAGGCT	alt_3682_missing	16	41	22	36	27	25	37	17	44	20
CCGTTTTGGTGCCGGC	alt_3682_missing	1	3	1	4	3	6	1	3	5	0
GGAATTGCTTGACGTC	alt_3682_missing	0	0	0	0	0	0	0	0	0	0
GTCAATTGATGGTTAT	alt_3682_missing	10	14	24	10	15	12	21	9	19	17
CTATCTTCGGTTGGTA	alt_3682_missing	12	13	17	8	17	6	21	15	22	12
CTACTATGATGGCTGC	alt_3682_missing	3	7	3	1	5	7	8	2	1	6
CACGTCCGGGCGTCCC	alt_3682_missing	0	0	0	0	0	0	0	0	0	0
TGAAGCGACAAACTTT	alt_3682_missing	0	0	0	0	0	0	0	0	0	0
TTTACGCTATGAATTA	alt_3682_missing	0	0	0	0	0	0	0	0	0	0
GTATACGCAATGCACT	alt_3682_missing	41	56	46	54	73	45	72	40	71	22
TCCGTTGCGGCTATCC	alt_3682_missing	20	25	26	17	29	17	32	24	34	15
GTTGCGCGCTCCCCTC	alt_3682_missing	64	103	86	54	96	64	79	59	115	47
TATTCTAATTATACCC	alt_3682_missing	22	42	46	34	43	25	49	25	47	38
AGGGCTATGTCCTGTA	alt_3682_missing	83	92	122	69	97	66	126	70	122	79
GTCGGGGCTCTCACGG	alt_3682_missing	0	0	0	0	0	0	0	0	0	0
TTCCACCCGGTTTGTA	alt_3682_missing	14	21	24	17	35	21	26	27	28	24
ATAGTGCGGGAGAATC	ref_2537_upstream	26	37	40	29	31	25	30	18	33	28
GGCCAGTCTTCGCCGG	ref_2537_upstream	25	27	22	21	22	16	26	22	17	26
TTATTATCTGCGCCGG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TGAAGGCCTGTGCACT	ref_2537_upstream	106	110	108	88	100	93	112	92	97	100
CAAGCACAACCAATTT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCCGACTCCGAAA	ref_2537_upstream	0	2	1	0	4	1	4	1	4	2
CCGACCAACGCTTCTG	ref_2537_upstream	3	26	6	11	20	6	20	5	31	2
TACAAGGAGCTCGCCG	ref_2537_upstream	9	16	21	16	19	13	20	6	15	9
CACGTTCGTTATTTGA	ref_2537_upstream	33	24	31	38	39	25	31	33	31	21
TATTCCAGCGATATCC	ref_2537_upstream	6	4	12	5	7	9	10	4	4	6
TTACATACCCAGTGGT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCGTTCGATGGTT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTTTTATTGGTTT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTGTCTTCTTTC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCCCAGGACCAAG	ref_2537_upstream	26	30	34	29	63	29	24	26	31	20
CACAAAAACGCACTTG	ref_2537_upstream	22	15	19	22	21	23	30	19	20	21
AGGTTATGTCTCCACT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GCATTTCTCACGTAAC	ref_2537_upstream	30	23	30	26	17	18	34	12	28	28
TCGACCAGCGCGCGGT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GCATAACTTGGCTAGT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAACTTCGCGCAG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
ACTCAGTAAGCATTTG	ref_2537_upstream	3	8	6	5	8	3	6	4	5	8
ATGGGTCCGCATGTGC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCCGCTACTCTTG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TAAAAGTAGGGGCGAT	ref_2537_upstream	93	86	121	105	106	100	110	101	91	80
TCTTTGTTGGACAACT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GTTTAGCCTTGGTCAG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
AATAAGTCCGTTTTTG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
CACTGGCGCCCAGCCA	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
ATCATACTTATCCTAA	ref_2537_upstream	12	8	14	18	12	14	8	2	13	8
CTACGGTTTATAGCTC	ref_2537_upstream	11	7	10	9	3	8	16	14	8	5
CCGATTGTCCAAGTAG	ref_2537_upstream	66	90	63	53	98	55	86	47	118	43
GGTTAGCATCAGTAGG	ref_2537_upstream	54	44	49	43	59	55	46	34	59	42
AAGGGCTCTACATTTG	ref_2537_upstream	110	113	148	101	113	108	103	95	110	77
CGCACGGTGCGGTCCG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GATATCCCCAGGGTGC	ref_2537_upstream	40	27	28	24	28	18	26	27	18	18
CTTGATCCTGCGATGT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
CACACACGTAGGACTT	ref_2537_upstream	29	20	28	22	31	31	28	29	33	16
GTTTTTGGCACGTAGT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAGATAGAGGTCT	ref_2537_upstream	16	21	12	23	23	24	35	20	17	10
AGGGCATGTTTCTGAG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGTGCGTAATTTT	ref_2537_upstream	19	23	34	15	24	16	25	22	36	29
CTCTTGCCTGCAGCAA	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GGATTCGAGGTGCTGG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TAACGGCAGATCATTC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCAAGGTTTCTAA	ref_2537_upstream	26	29	45	17	21	24	27	23	34	20
CGGTTTTGCTCTCCGG	ref_2537_upstream	50	56	41	36	57	39	42	55	63	38
AGATACTTTCGGCTAC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
CACTTCTACGTTTATT	ref_2537_upstream	83	79	70	76	63	76	81	77	90	54
GTGAAGTGTGGCTTGA	ref_2537_upstream	43	28	40	32	43	27	34	45	17	33
ACTGGATTGCGAATCG	ref_2537_upstream	18	20	16	14	21	17	23	19	25	18
CTAAACGTCATACGCC	ref_2537_upstream	63	33	65	57	32	53	46	40	49	43
GAACTATGGGTGGGGT	ref_2537_upstream	251	280	297	284	253	263	250	241	295	199
CTTCTGCTCTACTTAC	ref_2537_upstream	1	27	2	2	16	0	18	1	20	5
TGTGTCAAACCTATCC	ref_2537_upstream	31	25	44	36	23	16	37	34	53	24
AAGCACGGCGGGCATC	ref_2537_upstream	2	2	10	7	2	10	3	8	7	4
TCTCTCACAGATTAGC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
AGACACTCCTCGCCAC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTGAAAGTTAGGTCTC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTTTTCTCTTTGC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GAATATAGATGGGCAT	ref_2537_upstream	5	6	1	2	2	2	0	4	1	2
AGGTCCCCACCAATCC	ref_2537_upstream	17	18	20	22	23	21	23	14	23	17
GGTATGAGGGTCTCGG	ref_2537_upstream	33	46	44	29	31	32	32	37	40	27
GGTGTCCACACACTAA	ref_2537_upstream	37	37	40	40	36	34	26	37	38	33
CTGGTTACTTTCCTGG	ref_2537_upstream	19	11	15	19	9	16	25	15	30	15
TTATCGAACCTTGGCG	ref_2537_upstream	11	12	14	5	14	7	8	9	8	2
CCAATGCCTTCCGCCT	ref_2537_upstream	23	21	16	23	20	11	19	14	11	14
TAGGTTTTATTGGTTG	ref_2537_upstream	20	15	10	17	19	13	19	11	20	12
GCAGTGCTTCTGGTCG	ref_2537_upstream	34	52	51	24	48	36	49	38	47	33
CGCCTATTATGCGGTA	ref_2537_upstream	14	10	4	7	12	3	4	9	18	7
CGAGCGCTTTTTTCCT	ref_2537_upstream	21	19	18	23	16	15	21	20	25	18
TGTTGTTTGTTACGAC	ref_2537_upstream	90	92	116	96	93	82	101	58	90	60
GGTCCCCCCAGCCCAG	ref_2537_upstream	43	46	70	61	44	48	46	34	59	48
TTGTCCCTCCACTTTC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GAGCATTGTAACCCTC	ref_2537_upstream	33	18	41	54	38	33	29	28	35	26
TCCCTATGGTTGCTCT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
CTGGGGAATGTCTGTT	ref_2537_upstream	27	59	33	26	72	16	59	28	66	29
TGAGTTACAATGACAG	ref_2537_upstream	53	57	56	57	86	53	74	47	66	63
CCATGCGGGACAAAAC	ref_2537_upstream	5	23	18	20	22	8	10	14	12	11
TTTGCTCATCGTAATT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
ACAAAATACGGGCCTG	ref_2537_upstream	105	86	135	112	85	103	92	97	89	98
CTCGGCCGTCCGCTCG	ref_2537_upstream	5	1	9	2	2	4	1	2	2	4
CTAACTAATGTGTTTT	ref_2537_upstream	8	5	7	4	12	3	7	5	8	3
GTCACACAGTCATTGG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TATGGTCTTTCGTGCT	ref_2537_upstream	10	5	8	3	13	5	8	4	9	10
CACCGGATGTATGTCC	ref_2537_upstream	21	42	32	35	42	27	28	23	44	26
GCCTTTAGACTGTCTG	ref_2537_upstream	2	6	7	3	8	3	5	4	5	3
ATGCCTCGGGTTTCAA	ref_2537_upstream	26	27	38	32	30	25	27	20	20	25
TTTTCTCACATTTTTC	ref_2537_upstream	109	102	127	94	74	109	110	66	98	80
CCATTCTGTTCTAGTA	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCTTAGTTGGAAA	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTCAAATTTAGCA	ref_2537_upstream	73	105	107	87	88	70	80	73	91	86
GCTTTTGTCGTCCCTC	ref_2537_upstream	68	78	93	90	86	81	76	74	95	75
TAATAAAGGCGTGTTC	ref_2537_upstream	253	248	266	268	265	270	274	227	300	235
CGTTACCATTAGGGCA	ref_2537_upstream	10	6	13	19	9	10	16	7	14	9
ATAATTCAGGACTTGA	ref_2537_upstream	10	8	17	8	6	7	9	5	12	11
TGCTAACTTCGCGCAG	ref_2537_upstream	108	77	100	84	86	89	95	85	103	68
TTCTCAGTACTTGCTG	ref_2537_upstream	12	13	20	12	12	15	26	12	11	12
TTTCTAGAACCACACC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TAGATTTTTGCCGGCA	ref_2537_upstream	1	3	3	2	3	0	6	1	5	2
CGATATTTGGCATCTT	ref_2537_upstream	131	142	164	152	160	126	180	155	148	150
GTGGGATTACTGGTAA	ref_2537_upstream	7	9	0	5	11	7	10	6	11	6
GCACGTTCTAGAACAG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GGCGAACATCTTTACC	ref_2537_upstream	43	41	74	45	41	50	45	58	47	48
GCCTCCGGTATATTCA	ref_2537_upstream	8	4	3	7	5	2	2	3	6	2
TTTATGCTGACGATGC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GCGAACCCCTATGTAA	ref_2537_upstream	45	67	69	46	51	50	62	59	85	48
ATCATTTCCTGATCAC	ref_2537_upstream	26	37	32	24	30	26	27	34	32	25
CTCATCAGGACACTTC	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTGGCTAAGACT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCGCGCGATATCA	ref_2537_upstream	61	72	91	47	50	41	54	37	75	39
TTCTCATTGGACTATA	ref_2537_upstream	3	5	11	5	9	6	3	7	5	3
TCGTTAGATATATGTT	ref_2537_upstream	33	39	32	27	32	27	45	31	45	44
TTTACTCAAGGGTGGG	ref_2537_upstream	3	0	5	3	1	2	0	5	3	4
AAGCTCAAGGATCAGG	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCGCCCCGAGAGT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
TCACTTACCCGAGTCC	ref_2537_upstream	14	30	11	9	34	12	31	8	34	3
TAATTCCCATCACAAC	ref_2537_upstream	39	28	48	45	37	37	30	35	29	28
TGTAGTAGCTTTACAA	ref_2537_upstream	124	124	139	112	147	116	145	101	130	107
ATTATTGTATTTCATT	ref_2537_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAGGGAATCTCGT	ref_1338_RC	7	17	12	9	31	9	36	13	20	16
TACGAGCACCTCGTAG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GCAAGTCTGATGTCGC	ref_1338_RC	51	88	45	37	87	47	90	34	79	38
ACCCAGACCACCTCTT	ref_1338_RC	33	57	27	29	44	16	60	26	45	17
TCTAGAGGAATGGACG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TGATTTTTTCCCGATG	ref_1338_RC	30	78	35	49	69	49	87	40	99	42
GAATGGCAGTTAAGCG	alt_1338_RC	13	36	8	14	23	10	37	9	42	11
CCGGCCTATCTTACCT	ref_1338_RC	1	19	1	2	20	2	29	0	20	1
TTATGCCGTTATCTAC	ref_1338_RC	3	18	13	11	15	10	20	9	27	8
TCGACTTTGTACCTTG	ref_1338_RC	25	42	21	20	39	17	46	17	44	13
CCCTGCAACTCGGTGT	ref_1338_RC	24	68	41	18	65	31	82	23	92	34
GTCTACGGTTTCCTGC	ref_1338_RC	12	19	6	5	21	6	14	8	15	12
AGTCTAATTTGGATAC	ref_1338_RC	8	43	19	18	52	9	35	18	39	20
AGGTATGAGCAAGACG	ref_1338_RC	5	14	4	8	3	5	11	8	8	4
TGCGCTTCTCATTCTC	alt_1338_RC	10	19	15	21	11	9	10	16	14	20
CATCTGCATGACGTTT	ref_1338_RC	19	46	35	35	43	32	39	19	40	27
CTGCACGTTTTATATC	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
CACCTTTGCTCTTCGT	ref_1338_RC	11	26	15	11	23	12	20	13	32	10
AGCCTATATCTAGTTC	ref_1338_RC	25	75	23	33	67	22	62	21	77	28
AAGGAGGTTTTTACTC	ref_1338_RC	6	8	10	6	14	3	18	9	12	9
TATGATTAACTGCACC	ref_1338_RC	27	58	36	20	65	25	53	24	71	29
CGTTTAGTCGTCGTAT	ref_1338_RC	166	380	186	139	387	145	323	179	387	131
TGCTGCAACCTCATAT	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
CGGCGGTAGGCTAATC	alt_1338_RC	7	23	11	9	14	9	21	14	27	10
GCCATTTCTCCGGTTA	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TCTCAGTTTCAGCAAA	ref_1338_RC	24	51	31	26	46	23	58	21	76	15
GGTCTTATATAAATTA	ref_1338_RC	8	27	14	10	32	10	28	8	30	9
TAGCAAAAAGCGCTCT	ref_1338_RC	5	11	5	2	10	7	9	6	12	3
TAATTATTGTAGAGAA	ref_1338_RC	6	23	3	6	18	6	18	5	30	6
TTTCGCAACCCCCGCT	alt_1338_RC	19	19	8	13	26	8	22	6	28	4
CTGTCCGCCATATGCA	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
GAGACTCAGATTGGGT	ref_1338_RC	22	33	23	25	37	18	37	19	40	21
AAGTCTCAAGTTTCCG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TGTGTCGGGGCATTTA	ref_1338_RC	3	21	11	11	21	7	23	1	27	8
CCGCCCGGATGCGGTT	ref_1338_RC	0	2	1	1	6	0	5	1	7	0
TCAAAGCGTACCCGTT	ref_1338_RC	11	38	14	13	35	7	22	14	27	9
AGCTAATATGAAAGGC	ref_1338_RC	23	40	25	27	46	14	30	26	40	15
TCCTTGTTTCTCTCAT	ref_1338_RC	12	13	7	8	11	6	9	8	10	9
GCCTCTTTCTCCCTTG	ref_1338_RC	0	4	1	1	8	0	2	2	1	1
CATGCGTTCGGGCACA	ref_1338_RC	37	118	44	40	107	48	94	44	105	55
ACGGATGTAAGTTCGA	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TGCCTGGTAGCTTCCG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
CCTCCCACGCTTCTAG	ref_1338_RC	2	28	5	11	23	3	12	4	26	8
GTGGGGTCTTTCTGTG	ref_1338_RC	3	14	5	4	20	1	23	1	17	3
TGCGTAAATCGGCCTC	ref_1338_RC	10	18	11	10	23	2	15	5	21	8
TATTCTGGCTGGGGGG	ref_1338_RC	10	16	8	13	26	11	20	10	23	6
TGTTGACGATGGATTT	ref_1338_RC	122	276	175	146	259	159	254	140	271	131
TAGCAAGGGCGGTCTT	ref_1338_RC	23	47	25	23	53	18	44	23	50	20
TTACCTTCGAAGGCGG	ref_1338_RC	7	20	13	6	18	12	26	6	19	9
AATTTACAAAGTGTTT	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
ATCTGCGCTCCCAAAA	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
GCGTCTTTACGGTAGA	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
ACTCTACGGTCGTTTT	ref_1338_RC	16	28	14	6	29	10	35	7	36	8
AGTCTGGTTTCTGTCT	ref_1338_RC	4	22	5	5	17	4	16	8	12	5
GTCGTTCAACAAGCCA	ref_1338_RC	34	99	51	41	103	47	108	29	122	34
AGGCACGGCTTGTAAC	ref_1338_RC	8	17	8	8	19	7	14	5	21	7
GATGTCCGACTCTGGG	ref_1338_RC	17	23	8	14	27	11	17	6	20	7
AAACATATGAACGGGT	ref_1338_RC	31	75	32	25	53	24	82	31	62	23
GGAGTTTTAAACGCCA	ref_1338_RC	18	39	16	18	37	10	31	13	38	22
GGTTCTCAGCGCGGTT	ref_1338_RC	12	20	18	6	30	11	21	19	17	13
TGAATAGGACCTCTGA	ref_1338_RC	10	19	17	13	27	7	26	13	7	8
GCAACTCCTAAGCGGT	ref_1338_RC	24	38	21	21	53	19	27	16	39	18
TTCCATGACGAGCGTC	ref_1338_RC	88	139	95	55	171	70	163	55	146	71
GCGGCCTCCTGTATGC	ref_1338_RC	19	87	27	25	91	13	101	17	96	19
TGACAGACGATTCGGC	ref_1338_RC	62	140	103	47	157	59	134	58	137	76
AAGTTACCCCTGGGTG	ref_1338_RC	2	9	0	0	5	6	2	1	7	0
TCCTCACCTCTATCCT	ref_1338_RC	17	49	19	18	62	16	41	16	67	12
CGCTGGTATTAAGACC	ref_1338_RC	12	14	16	7	17	6	20	6	13	4
AAATGGATCGCAAGTC	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
AGTATTTAATTTCATG	ref_1338_RC	78	154	83	88	182	75	189	88	191	79
ACGGCCGCGTTCGCGT	ref_1338_RC	43	78	63	31	91	56	116	54	126	42
GGTTCCTGTCGCCTAA	ref_1338_RC	2	3	1	6	9	4	11	6	3	4
TCTCCAACACGCTCTA	ref_1338_RC	47	82	33	32	79	30	96	30	84	39
TCTAAGGATGTAGCCG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
AGGTGCTTGTGTTGTG	ref_1338_RC	5	19	7	11	12	7	20	3	21	7
CTTGGATTGTTTCTAG	ref_1338_RC	21	38	24	18	60	11	45	23	47	23
GCTGTCTACTATATTC	ref_1338_RC	58	213	62	65	208	62	195	52	239	47
GGCCTTGCTTTTACAA	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
ACAACATCGTGAGTCC	ref_1338_RC	15	22	13	9	27	10	20	12	21	17
AATAGTCCGGATCCTA	ref_1338_RC	16	34	20	18	35	13	33	10	47	15
CGACTATTGCGTCCAC	ref_1338_RC	1	6	4	5	6	2	3	4	9	3
AGAGGTATGCTGGTTT	ref_1338_RC	17	32	13	12	19	10	16	12	29	17
GTTATCCATGACGAGC	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TGATATTCGCTCGCGG	ref_1338_RC	49	97	62	50	85	47	114	30	97	37
GTTAAAGCCATGGCTT	ref_1338_RC	3	0	0	0	3	0	2	0	1	0
GTCATCCCATGCTGCT	ref_1338_RC	23	35	25	27	36	16	37	10	22	20
GATCAGGCGTTAATTC	ref_1338_RC	76	153	98	70	157	73	157	63	173	68
AGGATACCGCGCCAAC	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
AATGCTACTGGAGCCG	ref_1338_RC	53	129	69	56	128	58	154	50	120	44
GTTGCCTCCAGATCGC	ref_1338_RC	14	32	19	16	31	26	26	7	40	13
TTTGTAGCTCCCACGA	ref_1338_RC	0	10	2	1	8	1	10	3	7	1
TTGATTTGGTTTTTGG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
CATACTTGGGATCTCG	ref_1338_RC	0	4	4	2	7	2	5	1	5	1
GGAGTCTGCAAGGGTA	ref_1338_RC	16	25	11	15	31	8	26	10	31	12
TGCGGATTTAGTTCCA	ref_1338_RC	26	52	28	19	52	15	62	17	52	15
AGGCTATCCCGTCCCG	ref_1338_RC	4	20	7	8	5	4	8	5	7	4
CTTAAGCCTAAGCACC	ref_1338_RC	10	17	5	11	12	11	21	12	25	4
AGTGTTAAATATGAAC	ref_1338_RC	78	140	85	68	173	74	159	45	166	65
AGGCCCTTTCCTCGTC	ref_1338_RC	19	20	19	9	16	12	33	8	18	20
AGTGGTTTTTGTGTGA	ref_1338_RC	7	22	5	4	5	3	17	5	22	4
CCGAACGGTAGAACAA	ref_1338_RC	4	34	7	11	27	5	20	7	22	3
TCCTTGTTATCACGTC	ref_1338_RC	5	33	11	11	33	10	33	12	34	9
TGTGTGGTACCCAGGG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TATTACTTGTTGCAAG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TGAGACCCTATGGTGT	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TCGCAAATACTCGGGA	ref_1338_RC	5	14	6	10	33	11	14	10	24	7
TTAGTACTCGGGTGAA	ref_1338_RC	3	7	4	7	9	3	7	2	8	3
TTCCCTGGTGACACCG	ref_1338_RC	11	22	12	17	35	13	23	17	31	10
TCAAGCTGACCAACGG	ref_1338_RC	32	53	39	17	71	30	69	24	77	22
GCGTGCTACTCAGGTT	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TAGCTCGACCGCTCTT	ref_1338_RC	22	39	17	18	35	22	37	8	38	19
GCCGTGTTTTGCCACC	ref_1338_RC	42	134	53	46	132	44	150	42	146	44
CGGTTGCCCTTATATG	ref_1338_RC	14	34	27	18	49	11	51	16	33	11
ATATAACTCGCACTAA	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
GTCTCATAGTACCAGT	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
AGCCTTTTTTTGACAA	ref_1338_RC	18	67	36	32	81	34	78	20	85	39
CTTCATTAAATTCGTA	ref_1338_RC	6	18	9	9	16	8	28	10	17	7
GTCTGTGTCGCCCGTG	ref_1338_RC	0	0	0	0	0	0	0	0	0	0
TAATCCCTCGCGCGCT	ref_1338_RC	20	36	32	19	30	16	33	12	44	23
TTGCTCCTTATAGAAA	ref_1338_RC	6	35	11	13	38	8	33	7	24	17
TTAGATCCTGCTTTCG	ref_1252_fdr	84	74	84	69	77	68	85	48	71	70
AGTAATTAACATACTA	ref_1252_fdr	25	37	34	24	25	28	27	33	33	20
TGGGTTACACGAAGTA	ref_1252_fdr	17	16	7	18	13	12	16	8	9	16
ATGAGTACGACCGACA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TTGCACGGCGCTCTTT	ref_1252_fdr	10	11	19	14	23	17	21	11	19	14
TCATAAGTTTTCTAGT	ref_1252_fdr	44	71	58	41	40	42	60	27	69	43
GTCAAAAATCGGGTCG	ref_1252_fdr	20	18	10	19	33	19	18	25	18	23
GGCTTGCAGTACGGTC	ref_1252_fdr	12	10	18	11	19	9	10	9	13	8
AGGTGATTTGACTCGA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATCACCTGCGGC	ref_1252_fdr	78	67	92	66	70	63	75	69	88	65
CCGGAGTAGCGGGCGT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTCGCTCCTTGTT	ref_1252_fdr	31	30	44	30	37	27	34	28	45	26
CCTTGCTTTACTGCAC	ref_1252_fdr	4	19	11	9	12	8	26	10	20	12
CTTGATCAGGACGGCT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTGTGACTCGCA	ref_1252_fdr	8	10	12	12	15	12	19	21	17	9
TCGCGTTCCATCGTTA	ref_1252_fdr	31	27	30	25	25	20	27	18	28	16
CGGAGAGCGTTTTAGA	ref_1252_fdr	10	12	19	20	20	25	21	13	17	11
GGCTTCTGCTGTAGTC	ref_1252_fdr	1	4	4	1	1	0	2	0	0	0
ATTCTCCGCCTTCGCT	ref_1252_fdr	73	65	63	74	78	60	79	50	60	46
GATGTGAACTATCTGT	ref_1252_fdr	58	63	52	59	50	40	81	26	71	48
TTACCAGGTGCTAGTT	ref_1252_fdr	26	29	20	23	34	15	31	21	36	17
TTAACGCTTTCTTTTT	ref_1252_fdr	53	39	62	49	29	44	35	36	43	52
CGCGGTGCAACCATCG	ref_1252_fdr	33	35	38	36	48	34	41	26	50	29
GGTCATTCAATCTTTT	ref_1252_fdr	30	36	46	44	38	50	38	44	47	46
GTGCGGTCAGGTGTCC	ref_1252_fdr	30	39	58	29	54	27	42	33	34	42
CGCTCCCCACGCAAAC	ref_1252_fdr	3	28	11	9	32	3	45	4	42	5
GAATTCATCCGGTCTG	ref_1252_fdr	4	9	12	9	8	9	8	7	8	5
TCCAACAATCTATTAG	ref_1252_fdr	58	65	48	50	63	44	76	34	77	37
TGTTGAATACTTTTAG	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTTTGCTGCACCT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCGTAAGTTCCGA	ref_1252_fdr	2	1	1	0	0	4	1	0	1	1
TAACACCACTGCAGAG	ref_1252_fdr	18	21	26	11	21	12	27	28	19	22
TGCCCCACTACTTTCT	ref_1252_fdr	66	80	93	81	82	63	76	60	97	75
TTCGTATCGTCCACTT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTCTACGTTATAT	ref_1252_fdr	30	27	37	33	26	38	33	26	30	27
GTAGCCTCGTTTCGCA	ref_1252_fdr	2	0	3	3	0	2	4	3	8	3
AACTTGTCAAATGTCA	ref_1252_fdr	7	16	13	12	18	11	16	9	18	5
AATGCCGGTTAATGTG	ref_1252_fdr	21	28	35	27	36	29	25	28	19	24
TCAAGAATTAGCCCGG	ref_1252_fdr	21	35	22	17	34	27	21	27	28	35
CCGGGTTCTAGGGCAC	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TGCATCTGCAACGTGT	ref_1252_fdr	14	21	24	23	19	16	26	32	25	27
GGCGGGTTTCGAGACT	ref_1252_fdr	46	56	66	44	62	38	57	40	77	37
ATGTATTCATTCATCA	ref_1252_fdr	16	20	17	22	30	25	27	26	19	21
AGTTAAGCCATGCTCG	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGTCGCACACTCA	ref_1252_fdr	19	28	15	11	35	9	25	12	29	4
GTGGTGTCAGTTTTAA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CTGCAAGCTTGATGCC	ref_1252_fdr	42	33	35	29	31	30	15	32	29	22
GCTACCTCAGTCTGTT	ref_1252_fdr	12	13	17	7	14	17	25	8	15	11
AAGGACCGTTCCCAAC	ref_1252_fdr	82	85	76	100	112	88	118	78	118	68
ATACACGTACTCGTGG	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTATTCTTACCGC	ref_1252_fdr	15	26	21	14	31	21	20	20	35	22
CTGCAATGCAACGTAT	ref_1252_fdr	4	9	7	11	11	10	9	5	16	7
TCGTTCTACTGATGTC	ref_1252_fdr	64	110	63	73	112	63	98	40	120	44
TACTGGTATACTCATG	ref_1252_fdr	231	288	247	236	255	211	267	205	272	194
GTCAGGGACGGAGTGA	ref_1252_fdr	38	48	53	40	47	38	47	45	62	32
CGTCTTTCTGCTGTAT	ref_1252_fdr	69	82	93	85	76	76	92	68	88	70
CGTTCTTATTACCTAC	ref_1252_fdr	159	180	231	165	198	159	221	161	202	180
TTATCTATTTAAGGTA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GTATTCCTTATGACCC	ref_1252_fdr	19	31	34	26	28	16	19	20	29	27
TTGTGCTCGAAAATTT	ref_1252_fdr	5	6	5	5	6	4	6	5	3	6
TGTAAATTCCATTTTA	ref_1252_fdr	17	20	12	13	13	11	16	16	12	10
TTCCCGGATGTAGTGC	ref_1252_fdr	85	203	92	72	176	67	186	58	188	55
CGCGATTTTCGGGTGG	ref_1252_fdr	44	51	60	45	53	32	48	41	56	41
TTCTTCATTTAGGTGC	ref_1252_fdr	25	44	46	38	35	36	48	35	66	35
TAGTATGGCAGGCTGG	ref_1252_fdr	40	42	38	49	46	41	53	39	47	47
GCATATCCGTCTATTC	ref_1252_fdr	62	78	74	70	68	77	82	59	85	62
TAGTTTAGAAGATATC	ref_1252_fdr	46	66	75	36	63	60	50	56	60	38
AGCAAATTCGACTTCT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CATCTTGCGGCATTTT	ref_1252_fdr	47	34	49	53	38	41	45	32	56	37
CTGCCTTGTACTTATT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGCTGCCTAACGC	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
ACGATTTGCGCGAAAC	ref_1252_fdr	178	214	266	186	188	169	207	157	205	171
TTATCGGTTGTTAGGT	ref_1252_fdr	42	78	77	61	46	49	63	38	59	44
TTATAATTAGCACTAA	ref_1252_fdr	9	21	12	11	21	7	33	7	40	8
CATAGCCCTGTTCAAA	ref_1252_fdr	13	15	18	10	21	13	11	20	5	12
AGGTACTCTAAGGTTA	ref_1252_fdr	35	18	29	17	28	28	21	25	23	19
CCGAGATCAGACACAT	ref_1252_fdr	0	0	1	0	0	0	0	0	0	1
TTTTAGGGTTTACTAT	ref_1252_fdr	16	5	17	6	7	8	14	8	6	9
GGGTTGCCCTACTGGC	ref_1252_fdr	63	87	102	76	86	76	107	66	104	40
CGCGTTGCGTCTTACG	ref_1252_fdr	110	139	141	96	155	112	157	86	157	111
CGGCTAACCCAAGTTG	ref_1252_fdr	13	6	9	6	8	12	18	9	4	15
TGAACTATCCTGGAAT	ref_1252_fdr	153	186	164	159	169	135	244	115	215	133
GTACTGCATTTCCTGC	ref_1252_fdr	48	56	80	59	72	49	60	63	43	59
GGCTGTTAGGTTACCT	ref_1252_fdr	16	30	24	26	26	31	38	17	34	24
GCCATGAAATTGGGGT	ref_1252_fdr	74	84	76	84	99	67	89	76	119	44
CGATTTTCTCTTATGT	alt_1252_fdr	89	63	80	77	77	81	84	70	69	85
CATTGCCGCGCGCTCC	ref_1252_fdr	8	7	5	4	5	3	5	4	4	2
AGTGCTACAAACATTG	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TTAATCCGGTAGTTCC	ref_1252_fdr	58	84	87	76	83	99	92	70	100	72
GGTGCCTCATCAGACT	ref_1252_fdr	5	6	5	4	4	9	8	4	7	5
AGAAGTTACGTAACGC	ref_1252_fdr	39	43	42	36	51	32	40	26	36	33
CTGAACAATTCCTCTC	ref_1252_fdr	23	21	37	25	26	22	16	25	31	21
GATGATTCTTTATCAG	ref_1252_fdr	90	88	111	95	75	82	94	67	74	78
TTCCGCTACGGACCGA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GTGACTGGGTTTGCTT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CATCTCTCCTTTCTTG	ref_1252_fdr	11	16	7	19	8	15	6	15	15	11
ATTATACACTACACTT	ref_1252_fdr	4	3	2	3	6	2	8	1	2	5
CAAGTATATCCTGGGG	ref_1252_fdr	21	32	43	31	33	31	24	17	31	19
TAGTGGGCGTTACCGC	ref_1252_fdr	37	39	40	40	44	26	37	29	42	24
ATCTATAATCTGAACA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTGTTATGAACGT	ref_1252_fdr	23	25	26	29	35	23	22	31	22	23
GGCAAATGTTTGGCTC	ref_1252_fdr	9	12	15	7	11	5	10	10	8	8
TTGTTCCAGGCATTCT	ref_1252_fdr	5	7	9	10	8	3	6	6	3	2
CCGCCCCCCTGCTGCA	ref_1252_fdr	24	30	24	22	32	15	31	18	42	25
TTATTACTCGCTCCGA	ref_1252_fdr	3	10	12	13	13	7	9	9	9	8
AGGAGCGCATGTAATA	ref_1252_fdr	1	3	3	2	0	3	1	5	3	1
GTTGGCGGTGAGTAGT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCCTTATAGATCT	ref_1252_fdr	29	24	51	34	31	32	32	29	53	25
CAATTTGAGACATTTC	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCAGGTTAAAATA	ref_1252_fdr	19	41	20	23	39	24	35	22	21	17
ATATCTTTGCATGATG	ref_1252_fdr	23	19	34	28	18	30	33	30	33	31
CGACAATGCTCTCTCT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTGTACAAGATGA	ref_1252_fdr	21	26	37	21	21	17	27	16	14	26
CGCGCGGTCTTGTCTG	ref_1252_fdr	63	69	52	49	55	32	96	32	76	35
GAATGTATCTTTCATG	ref_1252_fdr	12	19	20	12	13	9	25	12	16	15
GCCTACGCCGAAACCT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTTTCTCATAGTG	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TTATCGAGGTATATAG	ref_1252_fdr	23	54	53	41	29	41	36	17	50	23
TTTGGTGCATCTTTTA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTTATGACTGACG	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TGGAAGGACCCACTTA	ref_1252_fdr	140	155	147	152	155	118	154	145	200	137
CCTGTCAGGTTCGTTT	ref_1252_fdr	5	4	6	3	11	1	7	4	10	6
TGTGGAATTTTGGCGA	ref_1252_fdr	74	68	99	74	58	73	82	73	86	45
GTTGACAATTCCCGCG	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GATTATATGGCACACC	ref_1252_fdr	268	289	292	263	322	219	323	219	352	213
AGCTTAATCTGGGCAA	ref_1252_fdr	53	55	53	36	64	54	67	62	74	50
TCGTGCAGTGAACTTG	ref_1252_fdr	89	83	99	68	92	69	85	66	102	77
CAGCCAATACCGCTTC	ref_1252_fdr	5	18	8	6	14	2	13	4	10	7
CCATTTTGGCCTCGTC	ref_1252_fdr	5	17	8	4	14	11	20	5	26	9
GATAGAAGTGTCCTCC	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TCACACGGCATACGAC	ref_1252_fdr	58	74	65	45	68	44	44	63	59	43
GAAGATAACATAGTTG	ref_1252_fdr	68	62	64	57	67	63	76	48	75	58
GGAAGCATGTAGTGAC	ref_1252_fdr	80	51	87	61	57	74	84	52	68	57
TCAACAGCAGGGCCAT	ref_1252_fdr	72	101	113	90	113	75	104	70	132	80
TTCGCAATCTAGAACA	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAGCGGTAGGCCC	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTTTGGCTGCCAT	ref_1252_fdr	41	37	55	43	35	38	53	46	37	18
TCGTTGGCGATGTTGG	ref_1252_fdr	42	47	59	52	54	56	65	60	54	44
GCGTCAGCTGGGTTCA	ref_1252_fdr	9	5	9	5	4	6	6	2	5	2
AGTGATCGTTGCGGAA	ref_1252_fdr	12	16	11	6	11	10	9	4	13	6
AAAGTAACCATCAAAT	ref_1252_fdr	2	9	4	4	2	3	4	2	7	3
ACGGTTAATGCCTTGG	ref_1252_fdr	67	68	63	61	78	64	68	60	75	41
GCTTAGGATCGCCCGT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTGAGTGGAGATG	ref_1252_fdr	81	105	129	99	109	81	116	61	130	82
ATATGCGCAGGCTGTG	ref_1252_fdr	185	200	185	202	191	159	167	141	221	158
ATCGCCACGGTGTCTC	ref_1252_fdr	2	5	7	8	2	2	8	1	0	5
TCAAGCATGCTTCGAC	ref_1252_fdr	18	30	20	16	31	9	28	8	29	9
GAACGGAACGGCTAAG	ref_1252_fdr	25	39	46	37	40	35	26	25	34	25
TTAAACTGCGCCAATC	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCATCTGCACCGT	ref_1252_fdr	18	16	23	20	20	15	36	26	30	20
AAAAACACGCGATTGT	ref_1252_fdr	35	29	31	37	34	32	17	17	31	32
CTCCATCCAGTCTTGT	ref_1252_fdr	4	8	8	7	8	6	6	8	11	1
CTTGGTACCCTGTACT	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTGTTGTCCACAC	ref_1252_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGTGCATTGACCA	ref_2029_RC	101	73	127	91	77	86	76	85	83	86
GAGGATCTGGTTTGGG	ref_2029_RC	14	15	21	11	10	9	7	15	9	11
CATCAAAGTCCATTCT	ref_2029_RC	5	1	16	11	10	7	4	3	13	8
ACTAGTCCAACTAGCT	ref_2029_RC	8	5	12	11	6	4	3	4	9	5
GGTAGCTTCCAAAGTG	ref_2029_RC	66	44	94	47	51	77	61	68	60	49
TTTGTCTCCTCATTAC	ref_2029_RC	447	280	462	415	273	400	314	393	272	354
CCATTCGATCTCCGTA	ref_2029_RC	96	70	104	111	80	97	70	95	112	79
TAGCTTTCGCGTAGTA	ref_2029_RC	133	82	175	137	108	126	93	113	105	123
AGTCTTCCGGCGCTAC	ref_2029_RC	99	107	144	103	93	101	98	108	80	88
TGCTTTGATTCCTGCC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TGGAACACGCATTATT	ref_2029_RC	21	14	18	25	10	15	4	16	13	24
GCCATTTACATTAAAA	ref_2029_RC	14	15	7	15	8	10	7	8	7	7
CTTGGTCTGCTAATGT	ref_2029_RC	114	83	122	94	81	107	77	78	81	95
CTCCTTTTTGGTAATT	ref_2029_RC	53	45	52	40	41	42	39	51	38	46
GGTAGAAGCAGGCGTG	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
ATTCTTTTACTACAGT	ref_2029_RC	56	25	65	46	20	49	32	41	46	32
AGGTATCATAACTTAA	ref_2029_RC	79	45	105	84	47	53	52	62	46	62
CTGGTATTCGCTATAG	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
AACCATTCCCCGCTGG	ref_2029_RC	87	91	93	60	79	66	74	73	99	65
GTAGTATGCTCCGTCC	ref_2029_RC	63	31	88	76	45	79	52	77	43	78
TCGACACGCAACTGAT	ref_2029_RC	33	25	61	40	30	37	29	37	32	33
GTCGGACATTAACTTC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TTCTTACAGTAGTGCT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TTTATTGCTATTTCGC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
CAAGTTAACGATGATC	ref_2029_RC	16	16	11	6	6	26	14	20	14	13
CTGTTGAGCTTCTCTC	ref_2029_RC	63	39	69	58	46	76	34	55	49	67
GGAAGGGAATAGGGCT	ref_2029_RC	215	117	283	243	129	235	142	208	153	184
GGTGCTATTTTAGGGG	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TTGAATACAGGCCTTC	ref_2029_RC	333	174	346	307	189	288	202	270	194	249
TGGACCTTAGCCGCTT	ref_2029_RC	15	10	22	10	17	6	9	9	10	16
CGAAGTTCAGGGTAGC	ref_2029_RC	36	23	36	34	20	48	30	40	32	43
GTCTGACTTCCCGTAA	ref_2029_RC	167	129	193	171	113	165	101	161	119	168
CGCATGGTTAGCATTG	ref_2029_RC	51	56	83	63	46	63	61	58	74	62
AACGCGAGTCCGGTTC	ref_2029_RC	26	16	25	27	19	23	20	24	13	30
TGTGTTCCTTACCGTT	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TATGCGCCCTCAAGTC	ref_2029_RC	29	21	37	47	23	39	25	28	24	34
TCAAACCTTGACTCCC	ref_2029_RC	15	6	16	9	11	7	6	9	13	17
TTCGCGTGTATTCTTG	ref_2029_RC	160	116	179	183	117	138	128	142	130	150
AGCCGTTTTGTGTAAT	ref_2029_RC	15	13	29	18	15	23	14	21	20	25
AGCTGTTGCCCCCTCG	ref_2029_RC	4	5	10	8	4	9	5	6	5	5
CTGCTGCGCCTGTTGA	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
CGTTTATCTATAGGAT	ref_2029_RC	2	3	2	5	6	5	1	9	2	3
GTTCTATTCTAGAAAT	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
ATAACTTATCGTTTAC	ref_2029_RC	38	29	46	31	25	27	25	39	25	33
TGGTAGGATATAATCC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TTCACCTTGATTCCAG	ref_2029_RC	166	106	192	144	118	166	137	150	121	155
AGGCATGCACTATCCT	ref_2029_RC	99	102	176	131	95	123	80	120	81	89
CGAGCCTGGGATCAAC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
CCATTGGGACCGTGGC	ref_2029_RC	94	56	106	94	62	63	77	65	70	70
CAAATTGCCAATACCC	ref_2029_RC	49	33	70	42	38	45	32	49	49	36
CTCATTAGAACTCCGT	ref_2029_RC	20	11	22	11	5	13	17	11	17	11
TTGTAGTCGATTAGGA	ref_2029_RC	45	21	37	47	20	28	38	44	25	25
TCAGGAAGTACGTGCA	ref_2029_RC	64	49	103	81	47	75	72	73	54	72
CTCCTCGTTTGGCTAC	ref_2029_RC	36	47	57	47	58	44	40	41	57	55
TGATCTATATGTATTG	ref_2029_RC	28	23	34	23	16	33	12	20	8	25
CGACCGTTTCGTTCTC	ref_2029_RC	62	29	46	58	20	56	32	44	35	51
TCACAGTTGGAGCTTC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GCTTTTGCTTTGAAGC	ref_2029_RC	17	20	26	20	11	13	6	12	15	12
CTTATATACTCTGCGT	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
GGCAGGGAAATTTTTA	ref_2029_RC	62	35	75	72	25	66	47	60	42	54
CGGCGGTTGTTTTGCG	ref_2029_RC	7	2	19	5	6	14	20	8	9	12
ACCACTTTGAAACGGA	ref_2029_RC	4	3	6	4	4	2	4	2	3	4
GCCGTTGATAGGTCGG	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TACCGTACACGCCCTC	ref_2029_RC	5	9	3	6	14	4	13	2	16	5
AGTCATTCACTCTACC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
GCCTACCCCGTTTAGC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGCAATCTGTTC	ref_2029_RC	67	33	94	71	48	65	43	64	46	53
TGAAAACGAGCGGTGT	ref_2029_RC	20	14	39	18	15	16	12	20	22	23
TTTGAACCTGAGCCCA	ref_2029_RC	15	9	35	18	14	14	7	18	6	22
AGTGTGCTTCAGTCGA	ref_2029_RC	17	16	16	15	10	9	16	11	9	9
ATGGGGGCGGCTCGGT	ref_2029_RC	5	5	3	2	4	5	2	2	1	6
CAAAATCCTGATCGGC	ref_2029_RC	5	6	21	12	11	10	11	15	3	11
CAACTTTTCACGTTGC	ref_2029_RC	481	371	543	464	359	429	373	398	397	398
TACTGAATAGATCGAC	ref_2029_RC	46	39	56	41	32	46	41	54	34	48
TTACTGAATGATTTGG	ref_2029_RC	12	14	15	11	13	12	9	16	12	22
GTCATAGAAGCTGTAC	ref_2029_RC	63	18	32	46	23	40	21	45	27	36
CTCACGATGTTTGTGC	ref_2029_RC	29	21	27	17	6	24	7	20	5	15
CCCTTTGCCAGGACAT	ref_2029_RC	61	26	95	65	38	50	41	55	50	57
GCTCCCGCTTTGTCTC	ref_2029_RC	0	19	6	2	5	5	20	4	8	6
TCATCGGGCTGATTCT	ref_2029_RC	69	54	91	76	38	58	43	82	55	69
TGCCTATTGCTTGGAT	ref_2029_RC	62	55	76	71	46	67	45	55	51	61
GCCGACGACAATGCTA	ref_2029_RC	16	9	25	20	15	23	17	14	13	15
CTGAGTAACTTAGGGT	ref_2029_RC	68	42	78	59	55	61	44	64	59	52
TTCCCACCGAGACGAC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
AAACATTGCCGTCCGT	ref_2029_RC	6	1	5	2	2	6	7	3	3	1
CCGTATGTTTGACCCA	ref_2029_RC	52	41	65	48	38	50	63	54	53	46
CCCGATCATCATCACC	ref_2029_RC	229	164	321	230	157	258	142	229	178	257
TCTTATCCTTATTCTC	ref_2029_RC	25	7	28	20	9	21	15	9	8	15
ATTGTTAGCCTCTCCA	ref_2029_RC	198	143	263	205	141	220	166	198	145	165
TACTCGGGTCGCTTGC	ref_2029_RC	43	46	40	35	42	36	53	38	43	38
GGGGCGAAGGGCCTAC	ref_2029_RC	32	10	26	25	20	22	20	25	20	31
CATTACGGAAATAACT	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TAGTCCAACTAATAAT	ref_2029_RC	86	84	136	102	75	106	75	106	79	111
GTCCACAATGCACCTG	ref_2029_RC	22	21	27	14	14	23	20	16	20	16
TTTTAGTACATTTTGT	ref_2029_RC	72	44	63	60	56	62	55	48	31	56
ATCGAACTCCCTCAAG	ref_2029_RC	1	3	3	4	4	8	2	6	6	5
GCTACTCTCTCCACCC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
CTACGTGTAGTTTTAT	ref_2029_RC	39	19	39	39	26	36	28	37	28	24
GTTTAGCACACTTTCA	ref_2029_RC	8	7	12	11	12	9	9	21	14	14
ACCCAGCCAACGGTCC	ref_2029_RC	23	22	23	19	24	29	25	22	20	20
GTTATAGCGCATCGGG	ref_2029_RC	43	24	39	37	16	28	37	26	31	21
TACAGCAGTGGCCAAT	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
CCTCGATTTTAAGTTC	ref_2029_RC	94	83	130	103	86	98	90	88	93	76
ATACAGGCCGTAAAAA	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
CCAAGCCATGTCAGAG	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
TATAAGAGAGGCTCTT	ref_2029_RC	66	36	95	57	46	60	35	45	52	55
AGGTCATGCTCCTGAC	ref_2029_RC	79	42	105	91	51	72	47	66	58	61
GGTTCAGTTCTTACCG	ref_2029_RC	57	43	86	85	48	65	44	48	40	61
TTTTACTGTCCACGGA	ref_2029_RC	25	10	22	19	13	9	14	27	18	11
GACGGATCTTTAGTTA	ref_2029_RC	124	65	148	93	74	93	64	98	81	93
ACCAAATTTAGGGGAC	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
ACTTCCTAATATTTTA	ref_2029_RC	53	31	74	48	25	58	23	30	32	54
CTAGCCTATGTGGTAT	ref_2029_RC	191	175	175	216	126	185	149	175	164	184
CTCGAGCTTTTGTTGG	ref_2029_RC	196	137	198	157	113	184	156	161	132	165
CCCGAGGTTTATAGCG	ref_2029_RC	37	32	43	34	28	51	28	54	34	42
TATAAATCCGACTCCA	ref_2029_RC	113	54	121	100	75	100	69	110	59	93
TTATCGTTTCGTCTTG	ref_2029_RC	30	16	37	21	15	21	9	25	16	29
AGTTATTGTTACTTGG	ref_2029_RC	18	14	16	7	10	12	10	13	1	11
GTTGCGGCCGTCCTCA	ref_2029_RC	99	66	119	106	70	98	69	115	72	96
GAGTGTGACATCGATA	ref_2029_RC	136	83	177	155	104	149	111	119	100	145
TTCTTTGTCAGCCTAA	ref_2029_RC	305	215	390	290	252	327	222	294	202	274
TCCTTTTGGTTATGAG	ref_2029_RC	381	217	396	343	223	356	220	332	221	278
CTGTACCCCATTTTTA	ref_2029_RC	27	21	36	24	12	31	23	24	25	19
TAGAGCGTTACACCCT	ref_2029_RC	14	17	27	15	13	23	20	22	12	15
CTACGTGTTGCTATCG	ref_2029_RC	47	43	74	63	40	64	53	39	48	39
ACGGTGCCGTATGATT	ref_2029_RC	0	0	0	0	0	0	0	0	0	0
CAGCCCCTCTTGCTTA	ref_2029_RC	12	9	22	20	19	16	15	22	18	14
CTTTCCTACTTCCGTG	alt_964_RC	231	107	286	219	149	229	139	221	130	192
TGAGAGTTCTAGTCAC	alt_964_RC	45	40	63	38	26	42	22	41	30	59
ATTCTATGGATGTGTG	alt_964_RC	48	37	42	39	37	45	20	51	28	44
CTGCGGTTATCTGGTG	alt_964_RC	138	70	184	154	72	124	77	118	69	127
AGCCAAATGTAGCGTA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TGCTCAAGATGGTTAG	alt_964_RC	1	0	1	1	0	0	1	2	1	1
ATTTCAGGTCAAAAGG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CTTGTCTCATCCTATT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GCGCCCATTAAATTAC	alt_964_RC	23	13	22	22	6	21	10	27	16	18
GATTATTGATCGCAAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
ATTGGTCTCGCCGACA	ref_964_RC	29	18	51	50	32	44	36	35	41	30
GTTTCGTATTCTTTTA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GCCTTTTGATTCCTTC	alt_964_RC	45	25	58	32	19	39	15	41	16	40
GGACTCTGTCACGCAT	alt_964_RC	93	37	116	88	45	94	48	84	64	80
CGATATTGAACTAACC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CGGTTGCGATAGCAAC	alt_964_RC	230	132	297	225	111	201	127	240	139	203
GATTAAATACAGAAGG	alt_964_RC	97	48	111	104	40	89	54	75	57	75
CAATGCTGTTATTCCG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GCCTTGGTCAGTTGCG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GATTGTTAACCCTGTC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
AACTTACACATTTGCT	alt_964_RC	37	25	43	26	16	33	21	32	30	32
CAAGCTGCTGATAGCG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GGCTACTCCGGTTGTG	alt_964_RC	91	85	150	125	85	128	94	103	101	98
GTTGGCCACCGATCAA	alt_964_RC	82	32	79	67	26	72	40	50	36	53
TTTATGGCCTTCCAAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TGGCCAACCTGTGAAT	alt_964_RC	27	17	19	24	10	21	15	14	15	21
AAGATTGCTCGATTTC	alt_964_RC	90	34	84	68	39	66	32	80	52	58
ACGTAATTTACTGGAA	alt_964_RC	110	39	139	90	49	77	47	91	35	82
TGACCGCGGTGATGGA	alt_964_RC	133	67	179	163	62	153	63	134	90	147
AATAATGCTGCATGGC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TCTATTTTTTTTTCAC	alt_964_RC	22	21	33	18	11	31	21	24	14	29
GAGACCGCATCGTTAG	alt_964_RC	131	62	150	115	53	118	60	91	67	85
TACGCCGCCAGTCGGG	alt_964_RC	158	90	230	207	89	170	81	162	87	162
CTCCGCTATTGTCGCC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCTACATCTGAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
ACTGTTAAGGACAGCC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TTACGGACCGAGAGTT	alt_964_RC	54	24	61	65	26	45	24	51	26	46
CTTTATGATTCGATGA	alt_964_RC	40	26	42	24	21	31	16	38	14	30
ACGTCAGTCAGGTGCT	alt_964_RC	92	56	131	107	62	84	61	91	84	91
CACCCTCGTAATCACG	alt_964_RC	169	70	206	178	78	155	86	164	77	118
CCCGTTCGATTCAAAG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CCAGTCGTCTCTTCTG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TCTAGGTCTGAAGAAC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
ATTCCAGTGAGCTGTA	alt_964_RC	11	7	19	19	9	7	8	13	6	9
ACACTAAGTCAATTAG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TCTATTTTTTTTTTCA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TGGCCCTGATTTTAAA	alt_964_RC	466	237	561	490	265	467	296	424	294	402
CTGGCATATATTATAC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TTTGTCACAGTTCTAA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CCATTGATGGTGGTAT	alt_964_RC	231	100	212	235	120	204	110	203	93	177
CACATCTTCGTTTTTT	alt_964_RC	80	59	112	100	66	73	45	93	60	56
GCAGGTTGAGCATTGG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TCCACAAACGAAATCG	alt_964_RC	198	93	212	200	112	193	123	185	113	150
CTAATGATGAGCCAGG	alt_964_RC	99	61	127	103	51	88	60	121	50	83
ACATAAGATTTAGGAG	alt_964_RC	32	17	44	35	20	42	18	32	32	36
TGTTTTTTGCCATCAT	alt_964_RC	138	66	182	148	65	132	53	159	75	119
TCGTCGCTTATGTCAT	alt_964_RC	23	9	28	24	8	13	13	25	14	18
TGGGAGCGTAGGAATA	alt_964_RC	242	125	306	252	116	265	134	228	129	229
GGTGATCATGTTTAAT	alt_964_RC	36	11	39	32	13	21	12	35	19	31
TTATACGCACGTGCGC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TCTACGTTTAACCCCT	alt_964_RC	134	76	187	161	62	121	71	119	85	108
TTACCCTCTGTTCAGC	alt_964_RC	154	123	209	224	137	194	137	191	139	160
TTCCGTCTTTAAGGCG	alt_964_RC	62	34	62	60	39	57	36	62	36	45
TTGGGCTATCAGCACC	alt_964_RC	92	54	116	103	53	101	64	93	55	82
TACTAAGAAACTTTTT	alt_964_RC	21	13	26	24	8	19	16	18	10	22
AGATTCAGGGTTGTGG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CCCAGGCCAGGGGTTT	alt_964_RC	73	46	70	67	30	73	49	65	34	62
TCAAACTGCGGCGAGT	alt_964_RC	67	26	86	78	34	63	34	63	37	79
GATCATAGGAGCGGAC	alt_964_RC	23	17	36	28	11	19	14	21	10	24
TTTAATCACTTCGCAT	alt_964_RC	0	0	0	0	0	2	0	0	0	1
GCATTCCTAATCTCAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TTTGCGACCAGTATTC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
AAGATTGTACCCCTTC	alt_964_RC	81	49	99	71	43	94	59	81	48	92
CGTGGCGTCTGTCATA	alt_964_RC	7	8	12	7	11	8	10	14	6	6
ATGCCGTTTAGGTATT	alt_964_RC	37	24	43	43	15	35	14	28	26	23
GCGCTATAGCGACTGT	alt_964_RC	43	22	47	54	30	51	28	56	28	56
TTCTTGGCTATGCATG	alt_964_RC	29	18	40	32	24	27	17	35	16	38
CCGTTCATCACCAGAT	alt_964_RC	168	108	177	157	109	156	109	135	96	113
TCGCAATCGGCTCCAT	alt_964_RC	39	22	51	51	30	43	26	49	25	44
CTCGGGTCAAGTACTT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TAGCGATTATAACGTC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CTTGTCTTTGGCCCGG	alt_964_RC	132	63	138	116	45	97	74	98	54	82
TAGTCACGTGATCGAG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TCCTCCACGCCGTGTT	alt_964_RC	55	31	82	65	45	54	38	50	41	49
GCTAGCCTTCGTTTCC	alt_964_RC	10	8	7	10	6	16	8	3	4	12
GTGCGGGCGATCCCGT	alt_964_RC	39	10	45	48	18	32	13	33	33	30
TGACGGGTTATCAACT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GAGGGGGCGTGCGACG	alt_964_RC	30	21	44	45	23	31	25	39	35	27
GATGTTCAAATATTGG	alt_964_RC	126	87	128	110	68	131	74	109	59	129
TTGGACTTTCCTAGTG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CGACCTTCTAAAAGCT	alt_964_RC	19	19	34	28	18	18	17	19	12	18
TCCTATCCACCCCGTT	alt_964_RC	5	10	16	11	6	14	5	9	9	6
TTTAGTTGTTTAAACG	alt_964_RC	117	72	146	129	89	128	71	104	99	122
CGTTTGTTGGGTATTG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CATTAGTGGAATGAGA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
ATGAGTTTTATTTCCT	alt_964_RC	200	100	217	177	100	182	99	135	115	188
AGCCCATGTTCTGCTA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GAAAGGCTTCCTCAAT	alt_964_RC	127	58	162	137	68	136	57	118	72	116
TCTGACTTTTAGTGCC	alt_964_RC	49	21	64	42	24	40	29	32	34	34
TTGGGGTGTCTACATT	alt_964_RC	112	75	168	136	66	123	47	138	75	118
CCCTATGCCTCGCAGG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GACGCGACCCTGTCTG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CTGTCAAGCTACCCCC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CTTCAGCAGAATATCT	alt_964_RC	23	25	43	37	25	33	32	37	24	26
ATGATTCGCCGTCAAA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CTGCAGCATCTTGCGA	alt_964_RC	49	24	46	46	29	35	12	42	33	44
CGTACATCAGGACTGT	ref_964_RC	136	124	160	127	123	150	126	132	125	127
ATGCAACGTATTCTGC	alt_964_RC	17	2	15	13	4	10	2	12	6	6
GGTAATTCTTAAGTAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TATGCCACCCCCTTGG	alt_964_RC	26	14	25	25	13	12	21	22	14	23
AACTGCCTCGGGAGGT	alt_964_RC	64	37	64	65	24	59	25	61	33	48
TTTTGGATCGCTAAGC	alt_964_RC	193	88	214	164	98	173	97	162	88	115
CCGCGTCTGAGAAGCC	alt_964_RC	6	13	8	12	12	6	11	14	14	11
CTCTCATGAACGCCCA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CAGGACGATTAGTAAT	alt_964_RC	13	16	26	19	10	12	5	19	15	16
TCGTTAATCCTGAGGT	alt_964_RC	99	35	94	60	36	83	60	51	34	66
TGTGCCGGTGTATTCT	alt_964_RC	120	65	155	139	53	136	62	106	87	124
CGGGTGTTAGTAGGAC	alt_964_RC	8	2	3	6	3	2	2	0	3	6
CGAATTCGTCAGTTGC	alt_964_RC	131	54	155	137	50	101	50	113	62	119
TGCGTCATCGGCTCTA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TTAATACTTCCACTGC	alt_964_RC	46	22	49	49	23	38	23	35	31	43
GACAGCGGGCGTCATG	alt_964_RC	120	61	129	135	51	98	68	107	51	105
TGTTTCTGGACTGCAG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TACAGTGCAAACGGGA	alt_964_RC	56	34	67	51	37	61	24	63	33	41
CTCAATGCAGTGGCGT	alt_964_RC	60	57	90	57	45	81	46	61	48	57
ATTTGGTCTCATTATC	alt_964_RC	62	41	117	78	46	98	44	68	41	53
TCTGGATCTCACGATA	ref_964_RC	59	34	57	49	31	65	34	53	42	28
GTAGCGAGAGCTCTAA	alt_964_RC	75	27	75	74	42	57	38	45	31	47
TTAGGTATGCGGGCAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GCCGGAGTGTAGTCTT	alt_964_RC	117	106	139	125	109	117	103	126	94	136
CATCCGATGGGTATAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
ACGAGTTCTCTGGTTT	alt_964_RC	71	40	89	83	33	56	46	79	34	59
TATTCCTTCGTACTAT	alt_964_RC	49	30	54	41	25	44	28	57	21	48
CGTCCTCTCCGTTTCG	alt_964_RC	52	31	55	49	13	41	30	45	42	49
GGAACCATTTCAGGGG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CAATTCGGAAAGATAT	alt_964_RC	113	55	100	110	45	104	53	108	53	79
TAGAATTCAAATATGT	alt_964_RC	9	7	26	25	14	18	11	26	10	26
AGGAGTGCACGCCAGG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
ATCGTCCGAGTTTATC	alt_964_RC	185	100	233	207	106	174	129	159	100	172
GACACGGTAGACTGGA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TGATGTCACGTTTACC	alt_964_RC	74	43	110	77	38	62	42	63	52	75
CCCTCACGAACCAATG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TAGGGCAGGGTGTATG	alt_964_RC	121	74	120	142	59	123	60	107	63	103
GCCTTTCCGTATATCT	alt_964_RC	100	59	117	109	76	104	75	105	68	97
CAAGCCTTTATGTTAT	alt_964_RC	38	61	41	49	65	41	59	52	61	40
TTCTACCGGCGCTAAT	alt_964_RC	53	26	69	51	27	43	39	50	35	37
GGAATGTGTCGTTGTG	alt_964_RC	39	21	45	20	27	32	16	35	20	29
TAGAAAGCCGCTGTAT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TTCCGAGCAGGAGTGC	alt_964_RC	96	63	148	129	51	84	48	124	66	98
CAGGGCCTTAGTATGG	alt_964_RC	24	14	12	23	14	13	6	23	8	21
ATAATGATCTGAATCC	alt_964_RC	30	15	45	39	22	44	16	33	28	22
AATGAGCTGTTTCCGC	alt_964_RC	20	19	33	22	7	34	22	34	23	25
TCTAGAGTGCTCGGTC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GTGGGCGTGAACTGAC	ref_964_RC	42	20	46	42	27	47	29	30	39	49
ATCCGCACTTTGATAG	alt_964_RC	12	11	30	14	5	14	7	17	9	16
AAATATCGGCTTTTTT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TATTCGTGCTTGCTTC	alt_964_RC	0	1	1	1	1	0	1	0	0	0
CTTCAGCGCAAGATAA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TACTAAGCGTTTCAAC	alt_964_RC	23	14	22	17	11	22	13	20	10	20
TAATATTTCAGGTTTC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GGTATCATGCTATACG	alt_964_RC	0	0	0	0	0	0	0	0	0	0
AACTACGGCCATTCTA	alt_964_RC	0	0	0	0	0	0	0	0	0	0
GCCGGGGGTCTCCTGG	alt_964_RC	62	23	93	77	41	51	46	55	31	48
TATACTCGCCCCCTTG	alt_964_RC	23	7	16	20	12	20	12	24	3	9
CTGCCTTTTCGGCCGT	alt_964_RC	36	20	46	29	24	30	25	25	22	34
GTCAAAAATTTACAGT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CGCGGTGATTATTTTC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
TAACAGGGAGCCAACA	alt_964_RC	93	53	130	107	59	113	50	127	49	85
CATCCCTCCTTAGTGC	alt_964_RC	3	1	4	3	2	2	1	2	6	5
GGATCTCGGCCGCCTC	alt_964_RC	0	0	0	0	0	0	0	0	0	0
ATAATAGTCTGGCTGC	alt_964_RC	34	13	40	33	14	38	18	35	16	29
GCATTCAACGCGAAGT	alt_964_RC	0	0	0	0	0	0	0	0	0	0
CGGCGGAGGGTTTTAG	alt_964_RC	107	64	157	112	55	115	67	110	64	89
TGGGGGGTGCACGTGC	alt_964_RC	6	1	10	4	3	7	6	7	7	3
CTATCATACGCTATTT	alt_964_RC	88	44	120	97	45	109	64	92	68	71
TATCCCTCCATCTCTA	alt_3970_reverse	55	46	65	44	38	46	55	58	47	47
AAACGGCTGGTATTTA	alt_3970_reverse	23	12	20	17	12	19	24	22	15	12
ACGTGTAGGTGTCGTT	alt_3970_reverse	76	76	111	93	85	67	77	76	72	80
TTTCTAACACGAATTC	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGCACGTTGTCGC	alt_3970_reverse	82	41	78	61	62	62	58	69	70	64
GCACGCATCTTAACTT	alt_3970_reverse	8	9	10	16	10	8	8	4	6	11
CTGAGCTGTCTCGCTC	alt_3970_reverse	76	46	53	44	48	74	40	48	70	48
ACAATGGCTTACTAAA	alt_3970_reverse	40	32	48	32	23	44	37	37	21	40
TTTGTCCTTTGCTAGC	alt_3970_reverse	29	25	50	35	31	27	31	26	22	15
TCCGTATTCTACTTTG	alt_3970_reverse	3	1	1	1	1	0	0	0	4	3
CCCCGCGTGCGAACAC	alt_3970_reverse	5	3	7	3	2	8	4	5	5	3
TCTGAGTCCCGTCACT	alt_3970_reverse	10	12	6	11	15	11	8	13	10	10
TTTGCGCACAGAGGTG	alt_3970_reverse	65	63	43	60	64	64	74	51	42	39
GTGACCCAGTACGTCG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TTGAATAAGACATTTT	alt_3970_reverse	32	57	36	48	34	28	37	29	54	23
AGACATGAACCCGTAC	alt_3970_reverse	40	37	47	37	23	35	35	36	30	25
TATCCAGTTCGGAGGG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
CCGGATTGTTCTTTAT	alt_3970_reverse	30	18	30	36	29	25	36	26	27	25
AACTGTTTGACTACGT	alt_3970_reverse	39	36	48	38	53	41	35	44	32	28
CGTTTCAGTCAGTCAG	alt_3970_reverse	23	11	41	31	22	35	32	20	26	26
GAGAGTCCACAGAAGG	alt_3970_reverse	21	11	23	22	27	19	26	14	25	10
GTTTCTGGATTTGCGA	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
GATCCTTCAGTATAAT	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCTGCGCAACGCC	alt_3970_reverse	51	37	57	40	35	61	43	29	38	32
GGTGGGAATCCGTCCG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
AGATATATTGCCGAGA	alt_3970_reverse	91	73	118	75	96	83	96	93	93	66
TGCCTGATTCCTTGAG	alt_3970_reverse	64	57	85	68	59	62	51	72	66	58
TCGCATACCTCATGCA	alt_3970_reverse	18	18	24	30	6	18	17	12	24	18
CGACCCATCAGGGGTT	alt_3970_reverse	11	15	18	11	9	14	15	11	25	12
TTATAATCTTCACAAT	alt_3970_reverse	34	13	22	14	12	13	18	20	11	16
CAAGATTAAACCATAA	alt_3970_reverse	32	27	37	27	20	29	23	34	20	24
TGCACGCAAACTCTTC	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
CAACCATGCAGGTATG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCTTCTGCGACTG	alt_3970_reverse	22	16	30	32	22	31	23	18	23	19
TATGTGGATTAACTAA	alt_3970_reverse	34	29	23	32	18	32	22	25	29	24
TCATATATCGGGATCT	alt_3970_reverse	360	257	451	379	326	359	298	333	295	316
CTTAAGTTGGACTAAA	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
AGTGATAATCGGTGGG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
ACAGAGTTCCACTCAG	alt_3970_reverse	219	250	259	229	220	232	221	189	252	205
CTCGTTTTCGCAAGCT	alt_3970_reverse	43	44	48	41	40	40	47	47	39	36
AAGTTTACAGCATATG	alt_3970_reverse	78	73	97	83	63	76	84	64	99	70
GTCAAGATGGTTACCA	alt_3970_reverse	18	14	20	13	11	13	12	8	12	9
TCCTTAATCATACCTC	alt_3970_reverse	37	26	47	29	32	26	27	28	40	34
ATGCCTTAGGTTACAG	alt_3970_reverse	46	41	58	43	41	53	51	46	53	38
AGGCCACTTCTCTATT	alt_3970_reverse	157	183	217	196	159	150	176	201	151	147
TACGTATCTCTTAACC	alt_3970_reverse	22	15	29	16	13	17	15	15	15	16
AGCTGTCGTTTGCGGG	alt_3970_reverse	48	32	41	24	38	44	37	29	27	39
TTGACGATGATTTGGC	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGTACCACATCAG	alt_3970_reverse	24	27	28	19	25	28	24	24	26	22
GGTGGCCATCTTTTAT	alt_3970_reverse	12	7	15	11	16	17	13	22	8	11
ATTAGCATAGTGCATA	alt_3970_reverse	57	70	102	62	71	80	48	95	79	68
CCCCACTGTTGATGCT	alt_3970_reverse	8	8	10	8	9	7	16	5	14	10
AGCTCTTAGATTTTGG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGCGGATCTCTTC	alt_3970_reverse	1	4	4	5	1	0	3	2	2	0
TGTATTACGTACCCCC	alt_3970_reverse	6	8	11	5	8	11	8	7	9	10
ACCTGCATATATGACA	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCTACGCATTCTG	alt_3970_reverse	57	87	63	64	96	40	97	32	85	42
ATTATTTAATCAGCGC	alt_3970_reverse	117	86	135	81	95	89	89	85	68	102
ACGTGCACACCCTGGT	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TCTCAGAAATCACCTA	alt_3970_reverse	41	29	44	36	25	42	24	34	37	28
GACGTGTACCTTCGTG	alt_3970_reverse	37	39	41	42	61	41	42	39	31	52
GCAGGATGGTCATAGT	alt_3970_reverse	87	65	81	84	57	73	77	54	75	57
TATTATGTCTGCGCCA	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
CCCCAGAGAATGGTGT	alt_3970_reverse	47	32	56	40	16	42	39	24	35	46
AATTTTAAGCACGTGG	alt_3970_reverse	32	21	33	23	18	22	21	38	35	21
GGATATTGATCCCTGC	alt_3970_reverse	15	7	21	19	16	13	9	8	13	7
CAGGCATGTTCCAAAG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
AAATCATCTGTTCGTG	alt_3970_reverse	37	37	56	25	32	42	39	38	47	25
TCCCGTCCTGATTCGC	alt_3970_reverse	106	89	110	81	114	109	108	98	86	76
GAGTTATTCGTGCAAA	alt_3970_reverse	12	9	11	8	20	12	5	8	10	10
TAAGAACATATGTGAC	alt_3970_reverse	10	31	26	15	21	22	14	19	30	12
GGCTGGGGTCTGCGTC	alt_3970_reverse	19	22	25	28	23	24	18	29	13	16
TATTGTGTCTCACCTA	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TGTGATTCCGGGTGGC	alt_3970_reverse	42	62	52	36	41	37	38	25	39	49
TCTAGATTATTTTCCG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAGAGTAACATCC	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
AACGTGAATGCTTGCC	alt_3970_reverse	126	113	140	139	108	117	136	109	126	122
GTTATCTGTATGTGAT	alt_3970_reverse	200	206	181	174	233	185	219	178	255	178
GTTACCTTTAGATCTT	alt_3970_reverse	14	17	26	16	22	18	28	16	22	16
GCCTTCCAGTGGTAGG	alt_3970_reverse	251	197	328	261	230	264	209	252	201	222
GCTTTTTATATATCAA	alt_3970_reverse	23	13	19	23	14	14	12	11	22	8
TCCATAGGGTTTCGCG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGCTATTACGGCA	alt_3970_reverse	22	24	36	30	19	17	21	17	26	11
TATCAATGCTTCATTC	ref_3970_reverse	33	24	45	27	27	20	20	26	24	33
GGGCCCGCGCATGAAC	alt_3970_reverse	44	31	46	49	29	46	30	50	45	32
GTCTCTGCAAATGTTA	alt_3970_reverse	36	32	44	33	42	35	30	34	35	25
CTGGCTAAGGAATGCT	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
AATAGAGATAGGTTGG	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TCGACGATGGACCTGG	alt_3970_reverse	110	128	148	166	115	147	132	159	137	127
AGTTTTTTGGGTACGC	ref_3970_reverse	91	82	102	96	81	93	104	73	84	84
CAGCGTGTTGCAAAGG	alt_3970_reverse	71	77	74	61	78	61	66	71	83	52
GACAATTGTACCATCG	alt_3970_reverse	83	86	85	78	72	71	66	74	97	50
TTTACTTATTTGTCTT	alt_3970_reverse	71	52	81	70	50	44	46	64	45	53
CTGCGGGGTGCAATAC	alt_3970_reverse	425	402	601	439	358	455	409	375	395	366
CTCTGTTGAGGAGCCT	alt_3970_reverse	84	49	90	78	58	82	70	61	62	72
TGTTTCAATTGAATGG	alt_3970_reverse	86	70	78	76	65	60	63	74	75	62
CGCCAGTTGCGCGTAT	alt_3970_reverse	26	13	30	18	17	11	22	18	12	17
TATGTTCTTCAGTCCT	alt_3970_reverse	240	182	268	262	165	219	160	190	183	190
GATATTTCGTGCTTAA	alt_3970_reverse	0	0	0	0	0	0	0	0	0	0
TCCCACGGTGTTTGAC	ref_1709_upstream	0	6	2	1	7	1	8	2	8	2
ATTGCCACTTGTTGCC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCGGAGTAGCCTC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ATTGATCATTCGTTCG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTACTTCTATCGC	ref_1709_upstream	45	51	68	74	71	61	84	69	62	61
GTGGGGTAGCGATCGC	ref_1709_upstream	55	64	68	53	59	60	70	61	68	42
CCGCGTTTATAACATT	ref_1709_upstream	27	37	31	41	46	17	49	25	42	27
ACTCCGCCATGAATCC	ref_1709_upstream	10	8	17	10	16	12	12	2	12	11
TATAATAAATATTGTC	ref_1709_upstream	7	12	11	9	6	13	11	14	5	6
AGAAACGCGGTTTACA	ref_1709_upstream	19	13	20	14	21	11	21	14	24	13
TGCTGCTTTTAGGAGC	alt_1709_upstream	5	16	4	9	17	15	17	17	15	11
CCTTTCAATCAGCATC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGGGGGCGGACA	ref_1709_upstream	11	10	7	7	18	11	13	14	9	7
TTGGTACGGCAGTAGG	ref_1709_upstream	17	11	8	18	15	7	24	11	17	14
ATTATTTCCAATTTTG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTCAATTCGAGTCTCT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACGCATTCTCTCGTTC	ref_1709_upstream	97	82	91	76	57	76	101	105	89	58
AGTAACCTGCCTTAGT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGTTACATGGTGGTAC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GAGGCCGTTCCTATAG	ref_1709_upstream	52	45	66	42	30	35	40	42	41	44
ATAATCACTGTTTGAA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGCTTCACCTGCT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCTACGTCTTGAC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTCTAGGGTGTCG	ref_1709_upstream	355	559	405	379	542	362	553	355	614	318
TTAGCGTGTTCCGCTC	ref_1709_upstream	29	33	26	27	29	22	27	25	37	24
CAGACCCGATATCGTA	ref_1709_upstream	13	25	15	15	24	18	27	8	17	18
GACTTTAAAATCTAAT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTTCACATTTCGGTCG	ref_1709_upstream	27	19	17	19	13	19	29	22	11	13
TATTTCAATTGCATAT	ref_1709_upstream	33	31	30	33	28	27	26	32	26	21
ACCGCGGCCGGGCCTC	ref_1709_upstream	12	29	26	16	32	6	35	19	24	16
CGAGCTCGCAAATTAG	ref_1709_upstream	30	28	27	23	38	25	37	35	45	33
CCTGATCCCAGAGATG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGCATGTTTGTCA	ref_1709_upstream	19	13	24	8	35	10	28	6	18	10
GATCAGCGATATACGA	ref_1709_upstream	22	31	41	18	19	25	29	27	31	20
CAGCGTCTTTTTCTCA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTGGATAGCCATGTGG	ref_1709_upstream	5	9	10	3	8	6	5	3	10	11
GACACAGGCGAAGGCT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CGCTACCAACACACTT	ref_1709_upstream	29	59	61	39	76	26	70	39	98	26
GGAGGCCTTACTTGGT	ref_1709_upstream	36	39	37	40	41	39	47	28	47	29
CCTACAATAAATAACG	ref_1709_upstream	16	10	10	20	29	6	11	22	27	12
ATTAAACTTGCTGTTT	ref_1709_upstream	21	25	21	19	14	20	22	18	22	27
TGGGTTTAAAAGTTTA	ref_1709_upstream	33	27	36	32	44	34	46	42	27	38
CGGCCCCCCCCAGGTC	ref_1709_upstream	33	50	51	54	34	30	33	45	47	32
CTCCGTACTCAAGTCT	ref_1709_upstream	103	117	93	82	119	53	161	84	152	85
AGCTTTGTCCGTCTAG	ref_1709_upstream	18	19	10	9	16	13	17	12	19	10
GCGACTTGCGTCCCAC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGTCATCTTGTAC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTCCCTCGTCGTG	alt_1709_upstream	0	9	2	0	3	0	13	2	6	3
CGATCTTAAATACGAA	ref_1709_upstream	6	17	14	13	9	10	7	11	6	8
CTTTTCTACAGGAGTC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCAGGCATCAAAT	ref_1709_upstream	163	228	212	162	178	174	201	137	225	152
TACTTTGATCCGCACG	ref_1709_upstream	69	85	94	72	82	77	90	62	99	63
CTTGCTCATACTGTGG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTCAAACATTTAT	ref_1709_upstream	255	346	317	264	331	202	325	223	359	194
TTATCTTGGTCCTAGT	ref_1709_upstream	19	26	26	15	35	21	23	14	35	24
ACCGTAGTTATATCGG	ref_1709_upstream	41	39	41	35	42	26	46	27	40	19
GCCAGGTTCCGTCCAT	ref_1709_upstream	3	2	5	4	7	2	2	5	4	1
AAAGCTTGGGCGATGA	ref_1709_upstream	11	35	32	19	28	19	24	18	33	12
TTCGGTCCGCAATAAA	ref_1709_upstream	4	11	6	6	3	10	13	4	3	7
GAACCGTTCCGGAATA	ref_1709_upstream	47	47	51	41	46	40	55	47	62	33
CGCATCTGAGCCTTTA	ref_1709_upstream	13	13	17	13	4	7	9	6	9	10
GTTGGAACGGGTATTT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
AACGATTGCACGCCGG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACCACCATTGGTCTCT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TATGTGCCATTGCGCG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TAATTAAGTTGTATAT	ref_1709_upstream	24	19	38	30	16	16	21	22	22	24
GACGATACTAATACTC	ref_1709_upstream	40	61	28	27	64	30	48	30	66	22
GGTCCGGGTCACTATC	ref_1709_upstream	62	74	75	69	74	58	97	58	81	56
GTTTCTAGAGACAACT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGGTATACATAGA	ref_1709_upstream	16	29	19	10	24	8	34	14	22	11
TTACATTTCACCATGT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCGGTTCGTTCCG	ref_1709_upstream	48	54	51	47	62	59	74	56	64	45
GTTTCTACGTCTGTCC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACATGGTTCTCCATGT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGCTATGGTTTGGGAT	ref_1709_upstream	35	55	45	49	50	37	48	27	55	34
TATAGTACAATGCCAA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGGGCAGGTCTCA	ref_1709_upstream	97	104	115	102	108	107	128	73	124	82
ACTCTCATGTTTGCGG	ref_1709_upstream	64	53	46	47	68	47	58	45	56	47
TCACGACAGTAGTTTG	ref_1709_upstream	25	23	35	28	34	31	37	17	33	23
GTCAGCCCTAGGCTAA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTAGCGCTGTCAC	alt_1709_upstream	11	23	14	11	26	12	25	8	33	10
TCTGAAAGTTTCTCAA	ref_1709_upstream	12	17	26	14	16	11	14	8	19	12
TTTATACCGTTGAAGC	ref_1709_upstream	25	37	40	22	29	33	37	24	39	19
GTCTAAAACAATCCTA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTCTTTTTATTTA	ref_1709_upstream	21	22	22	20	22	15	27	18	30	19
GTTACGATATTCCAGG	ref_1709_upstream	58	55	82	74	62	53	91	71	52	46
AAAAAGGTTTTAGTTA	ref_1709_upstream	18	13	20	17	26	14	27	19	26	15
CTGCTCAATAGGTTTG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTTTCGCTCTCGG	ref_1709_upstream	7	7	8	17	7	11	15	11	12	10
TTTTGTTCAAATAGGT	ref_1709_upstream	7	8	9	3	9	6	8	3	2	8
CTTGTCATGGTTTGCC	ref_1709_upstream	10	11	12	19	16	19	8	10	21	14
CTGTACCGTCTTAGCT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGTCCTAAAGTGT	ref_1709_upstream	24	19	19	15	19	17	22	10	30	8
AACGCGGTGGTTGTCC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCTATGTGTTCGGTAT	ref_1709_upstream	34	37	36	25	42	33	44	36	42	37
TTTCTCATGTTATCCT	ref_1709_upstream	27	16	33	28	25	35	17	24	33	21
CAAGCTCTTAAATCGG	ref_1709_upstream	97	121	153	120	130	104	146	98	140	102
CGGCTGTTCTTTTCTG	ref_1709_upstream	6	13	10	13	12	14	13	14	15	6
ATAGATCTACTTTTTT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GCAAGATTATAGGTGG	ref_1709_upstream	17	18	20	10	20	16	16	10	12	10
GGCACGTTTGTTTGTT	ref_1709_upstream	48	48	47	57	57	52	48	53	78	44
CTGCAGGCCCTCGACT	ref_1709_upstream	103	179	151	127	152	130	194	117	186	98
CGATACCATTCGGAAT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ATGCATACGTCACCTA	ref_1709_upstream	83	86	82	82	84	78	79	93	76	82
CCGGTGCTCTGTTTGC	ref_1709_upstream	56	56	53	50	54	39	74	50	91	52
TAGCCTGGAGCTCTGT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCCGAAGCATGTGTGC	ref_1709_upstream	58	75	82	77	81	57	65	54	88	56
ATGCAGTACTGCGATA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACCAAGCTTCGCTTCT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGCATGTTCGTAACAT	alt_1709_upstream	72	163	87	72	184	85	145	65	131	63
GCAGATACGTTTATTT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
CATATCTTAAAGCATT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCCTATCGGCTGAGCC	ref_1709_upstream	4	31	5	3	18	3	15	2	19	3
TGGTCAGAGAACATTG	ref_1709_upstream	10	8	7	6	6	9	7	10	11	9
CAAGACGATTATCTAA	ref_1709_upstream	66	73	96	85	84	55	109	83	114	53
CTTACAGAGTTAGTTA	ref_1709_upstream	13	12	20	11	14	14	15	8	23	15
AGCAAAGATTCCAGTT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGGGATTAACGAT	ref_1709_upstream	17	17	24	19	15	19	30	16	20	19
GGGTACGATGGGATCC	ref_1709_upstream	16	15	11	14	23	11	22	10	29	13
AGTTATTTTTTCCCTG	ref_1709_upstream	157	139	176	139	157	136	149	144	145	126
ATCAGCGTTAATGTAT	ref_1709_upstream	10	24	23	5	23	16	27	15	22	7
TAGATTCCTTCGGTGG	ref_1709_upstream	96	127	117	97	119	103	131	115	164	69
TAATTTGATGGTCTAC	ref_1709_upstream	24	34	35	24	38	24	39	20	48	27
AAGGGCTAGGGGGCCA	ref_1709_upstream	7	11	10	13	19	10	11	11	13	21
AATTTGGACCATCGGT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACTAACGCCAGACCTA	ref_1709_upstream	25	25	11	22	24	24	27	23	26	16
TCACGTTTTAGCTTCA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TATCGATTTTGTGATC	ref_1709_upstream	78	73	93	86	81	73	74	53	93	73
GTGAACGCGCACCAGA	ref_1709_upstream	70	69	79	77	80	46	91	71	102	50
TTGTTCTATGTTTTCA	ref_1709_upstream	20	27	40	22	31	22	26	32	20	22
CAATATTACTTTAGGT	ref_1709_upstream	41	44	46	33	43	40	34	26	33	42
TATCCGGATTATACAC	ref_1709_upstream	0	0	0	0	0	0	0	2	0	0
TATCCTACGCTCTAGA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GGTGAGTGTGCTACGG	ref_1709_upstream	23	23	26	10	10	18	22	18	15	25
CGACGCACCTGTGGTT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCGCTTTTTAATT	alt_1709_upstream	71	118	78	66	112	49	137	63	121	51
AGACTTTAATGGGTTT	ref_1709_upstream	9	5	8	5	17	7	10	6	11	3
CGCGGACTGGCAGGAG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TATATGCGTGATTTAC	ref_1709_upstream	45	42	53	43	57	29	46	36	63	27
GCGGCCTTGCGCCACA	ref_1709_upstream	16	12	15	17	15	11	21	8	17	9
TGCATCAATCTAGAAC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TACGATAATCCGAGGT	ref_1709_upstream	11	17	7	7	13	5	7	10	4	7
AGTAAACATCCCAGAT	ref_1709_upstream	81	70	88	78	68	85	85	68	74	67
CTATGTCGCTCACGGC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGAAGCGTTCAAGGTC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGAGGACCTCATT	ref_1709_upstream	27	22	37	30	37	19	37	33	46	22
TGCGTCAGATCGCTGC	ref_1709_upstream	68	70	64	65	72	54	58	63	59	51
ATCTGGGCATCCATGA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTCCTCTAAACTC	ref_1709_upstream	18	35	25	17	18	22	25	26	34	15
TCGCGTTCCTAATTCG	ref_1709_upstream	38	51	60	58	64	48	53	38	52	30
TTCAAGTGGGTACGAA	ref_1709_upstream	20	18	26	19	28	19	27	7	17	16
CCTCCAAGTTAGGGAC	ref_1709_upstream	91	123	123	117	133	105	109	88	96	101
CGTAGTTGTCATAGAT	ref_1709_upstream	1	4	6	6	2	2	8	1	6	0
ATACTAGCATCTGAGT	ref_1709_upstream	41	42	38	36	37	26	57	36	32	21
GGTTCGCTTTTTCAGT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTGACTATTGCTGCTC	ref_1709_upstream	30	25	24	25	17	20	34	19	30	17
ATTTGCCGGTGTACTC	ref_1709_upstream	20	34	26	48	51	28	37	34	51	22
ATTGAACTTGCGTGAG	ref_1709_upstream	6	18	13	10	21	21	17	5	30	9
CCCAGTGTATATGGCT	alt_1709_upstream	24	42	21	19	45	19	44	21	51	23
ATACCCGCGATAGTAT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
GGATTGGGTTTTGTAC	ref_1709_upstream	6	1	6	6	3	4	6	2	10	7
CATTAAATTTACGTAT	ref_1709_upstream	68	82	80	89	70	69	79	74	81	89
AGTACGTTGCTGTTTC	ref_1709_upstream	13	14	13	13	16	9	18	15	21	12
CATAATTTATTTGTCC	ref_1709_upstream	16	25	25	16	13	17	20	18	26	6
AGGTGTCGCTTAACCG	ref_1709_upstream	9	9	8	12	6	7	10	5	6	4
CCTTCCTCGTAAGGCC	alt_1709_upstream	79	83	75	79	97	48	111	47	87	53
GCGCATTTGCTCGGTT	ref_1709_upstream	21	15	25	21	16	15	30	12	21	17
TTAGGGAAGTTCAACC	ref_1709_upstream	15	22	21	13	28	21	24	15	28	16
ATGCGTTTGTCTTCAA	ref_1709_upstream	17	9	16	16	21	10	15	13	16	20
GGTAGATGCTCCCGTG	ref_1709_upstream	31	26	19	26	31	32	39	29	33	30
TTAGAGCTTAGTTTCT	ref_1709_upstream	9	21	17	14	15	13	13	10	14	18
TCTATGCCAAACCTAT	ref_1709_upstream	14	14	19	13	20	15	14	12	19	14
GTTCGGTTATGACAAT	alt_1709_upstream	6	24	15	3	19	11	19	13	18	6
CTATCGTCGAGGATCA	ref_1709_upstream	34	33	48	27	47	37	32	36	50	28
TATTCCTGTGGATGCT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCTTAGTGTATGT	ref_1709_upstream	162	173	183	149	175	126	207	126	177	155
TTCAAGGCGCAATGGG	ref_1709_upstream	52	72	58	64	73	58	74	62	102	65
TTAAAATTGGCGGGGG	ref_1709_upstream	74	69	86	82	77	89	86	88	87	73
TTCATACTAAATTGCT	ref_1709_upstream	15	21	21	24	14	26	19	18	25	17
AATACATAATTACGAA	alt_1709_upstream	19	7	13	11	27	14	17	19	17	12
CGCAGACAGTTATGCG	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAATATGTTTTCT	ref_1709_upstream	49	52	57	32	44	43	35	42	34	48
TCCCATGTAGCCCACC	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGTTCTATGGTGT	ref_1709_upstream	1	2	6	5	9	7	9	4	6	5
GTCTGGTACAGCAACA	ref_1709_upstream	10	19	20	14	16	11	17	15	16	15
TTGCGAAGCCGTCGAC	ref_1709_upstream	40	38	41	47	53	42	45	34	40	30
TCGGGGGTACCGCAAA	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTACCCTATGTTCCCT	ref_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTTACCGCAGAGACCC	ref_2544_negative	24	27	34	30	20	31	25	23	23	26
CAACCCCTCATTTTGG	ref_2544_negative	4	2	9	1	0	1	1	2	1	4
GGTTATAACATTCGGG	ref_2544_negative	121	114	173	141	94	116	105	97	121	91
CCTTGCGATGCTCTGA	ref_2544_negative	240	278	323	240	239	251	252	205	293	200
TCTTCTAGTGGTACTG	ref_2544_negative	10	14	18	14	18	15	8	9	8	9
CCGCGCCGTTGCACTT	ref_2544_negative	10	14	11	16	9	13	11	8	17	10
TTGCAATACGTTACAA	ref_2544_negative	8	4	7	7	5	12	9	4	6	4
TAACTCTCATATATGT	ref_2544_negative	66	60	71	60	57	55	48	65	48	58
ATGCAGGTTGTTCATT	ref_2544_negative	43	56	80	51	35	54	56	61	48	44
ATCGACATGTCTGTTA	ref_2544_negative	24	29	24	17	12	14	16	23	17	16
ATGCCTATAATACCTT	ref_2544_negative	9	4	8	11	4	9	7	4	3	10
CTAAGTGCGGACAAGT	ref_2544_negative	13	14	21	14	9	13	7	18	14	9
TTCCGTATATCTCAGG	ref_2544_negative	387	357	511	453	379	367	346	372	352	332
TCAGTGAAGACCTTTT	ref_2544_negative	25	39	27	16	19	19	24	24	38	23
TCGAACGGCTAGGATC	ref_2544_negative	25	28	38	18	29	27	28	26	27	31
ATCAGTATAAAGTGCT	ref_2544_negative	0	1	0	0	1	0	0	0	0	1
TACAGTCATGGCAGGC	ref_2544_negative	6	3	10	8	9	8	14	10	7	5
TCACCGTTCTATTCGC	ref_2544_negative	81	84	70	74	96	47	95	58	116	47
TATGTGGAAGGTAACG	ref_2544_negative	65	69	78	78	70	62	67	65	68	68
TGGGCGATCCTAGCAC	ref_2544_negative	40	60	57	51	54	42	40	56	66	44
CGTCTGCTGACTTCGT	ref_2544_negative	15	17	30	16	19	17	16	18	16	19
CATTCGGCCGTCTTAC	ref_2544_negative	43	64	57	61	60	44	76	43	73	48
AAACGGGTAGTCCAAT	ref_2544_negative	2	4	3	3	2	1	2	6	5	2
CGCCACGGAGACCGAT	ref_2544_negative	2	4	3	9	8	4	2	7	4	7
GATTGGACGGCTTGAT	ref_2544_negative	6	4	9	1	9	10	7	7	9	6
CCTAATTGTTCAGCAA	ref_2544_negative	53	64	71	71	89	46	63	69	89	44
GCTGGTGCCACCGATA	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
GCCTACACAGAAATAT	ref_2544_negative	151	156	184	162	163	122	157	172	195	115
TTAAATTCTGGTTCTA	ref_2544_negative	75	78	124	108	88	111	72	85	73	87
TCATTTTCCCTTTCAA	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
CAAGGATCTTGATTGT	ref_2544_negative	26	25	47	36	44	35	43	31	41	22
ACTTCAGTTCTCTTCG	ref_2544_negative	124	91	104	123	105	112	98	99	111	106
ATGTCCGTATCTCCTA	ref_2544_negative	44	45	44	37	42	43	46	45	41	32
TTCTCTTTGTGTAATG	ref_2544_negative	79	80	113	92	64	84	78	79	91	72
CGTTTAGCTCGCACAG	ref_2544_negative	51	58	69	67	57	37	74	46	70	41
TAATGCAAATGTGCAT	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
ACAACAGCCTCTCGGG	ref_2544_negative	30	33	36	24	29	26	41	27	40	22
TTATGATGCAAAGTAC	ref_2544_negative	189	168	217	183	140	176	162	193	179	156
CGTGTGAAGAGCCGCA	ref_2544_negative	28	26	36	22	16	18	24	23	24	27
AATTATCCCGGCGATT	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
ACATCACACTTACTGG	ref_2544_negative	17	12	23	10	12	17	6	21	15	14
GGGTTGTGCCCTGTAT	ref_2544_negative	68	62	73	46	51	45	68	60	52	45
TATTTTCTCTAGAACA	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
GTACCCGGCATTCTTT	ref_2544_negative	1	7	7	9	11	2	7	3	14	2
AGTTCAAGCATCAAGA	ref_2544_negative	65	40	68	57	55	49	35	51	41	59
ATTGTAATGTCCTTGA	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
GTTTGACGCATCCACC	ref_2544_negative	92	67	103	106	85	84	89	98	104	90
TCAGACATCATCTCAC	ref_2544_negative	19	26	24	15	18	18	25	11	18	18
TCCTTGGAGCATACTA	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
GCAGAAGGCACCAGGT	ref_2544_negative	101	63	117	101	76	91	99	90	87	85
CCGCACCGGCCTGTTT	ref_2544_negative	5	19	13	8	25	13	20	19	26	5
TATCGTTAAGTTAGGA	ref_2544_negative	16	25	24	18	12	16	20	23	25	20
ACCGGCTCAACAAAGT	ref_2544_negative	1	8	1	0	4	1	9	0	10	0
TTAACGTAACATTACA	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
GTATTTTGGTGTGGGG	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
CTACGGGGGTGACGAC	ref_2544_negative	71	75	102	79	74	93	76	55	76	39
AACCGTGCTGCATAGA	ref_2544_negative	23	25	20	22	18	13	26	22	18	14
TAACTCGCCTCGTCTG	ref_2544_negative	66	74	69	61	66	68	93	55	95	58
CCCAATGCAGTACCAG	ref_2544_negative	15	17	17	13	22	12	10	18	22	15
AACAATTCGAGCGCAC	ref_2544_negative	9	4	6	12	12	11	11	7	6	10
TGTGGGCATTTACGCA	ref_2544_negative	12	12	14	16	10	13	12	17	12	14
TGGTATTGTACAGTAA	ref_2544_negative	240	197	284	257	196	255	219	240	221	220
TTTATCGGATAGGTTA	ref_2544_negative	31	25	35	34	37	24	42	25	36	35
TGCGCCCTCCTATCCT	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
TAGTTCTATGCTCGGT	ref_2544_negative	0	0	0	0	0	0	0	0	0	0
TCTTTCTGGCATAGTT	ref_2544_negative	45	52	50	55	46	52	51	50	52	38
CGTCCCAATGACGAAG	ref_2544_negative	25	30	40	24	23	29	25	33	28	22
AAATCCGGCGCTCGCA	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
CCGTGCGACAGCTCTT	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
TATGAGCTGTATAGAT	ref_2278_negative	21	45	41	24	36	29	40	35	49	23
GAGTTAACCATTCAGT	alt_2278_negative	17	26	23	10	24	13	30	15	18	14
AATAAGCTAACCCTGA	ref_2278_negative	26	42	30	40	44	37	39	26	56	32
GCGGAATCCCATACGG	ref_2278_negative	93	131	107	78	149	73	149	96	152	82
TCTTCGTGGTAGTTTT	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
CTTTAATATGTCCTTT	ref_2278_negative	8	8	14	7	3	6	10	3	8	9
TTCCTCCGTTCTTTCG	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
GCGCCGAAGCGACTGC	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
AACGCAAACTTTGGCT	ref_2278_negative	4	7	10	5	11	4	4	5	6	4
CACAGAATCCGCGTGG	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
CTTACGAGGGGGCGGT	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
GCCCAGATTAACTCGC	ref_2278_negative	8	19	14	13	14	12	24	14	10	16
CAGCTTAGATCCGTCC	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
GTTCTCTGTAGCCGTA	ref_2278_negative	100	164	105	97	180	96	155	75	164	74
AATGGGTTCCCTATCA	ref_2278_negative	33	65	44	35	66	33	57	49	59	40
GCCAGCACATCTAGTT	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
TGGTGAATTTTGTGAT	alt_2278_negative	64	117	69	86	96	61	112	61	102	44
TCTGCATTTTACTCTA	ref_2278_negative	8	15	18	9	13	5	16	11	19	8
GAATGCAAACTCTGGT	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
AATATACGTCTTTTCC	ref_2278_negative	18	34	26	27	22	18	17	17	31	15
AGAAAAGCTGGGAGCG	ref_2278_negative	11	10	5	7	13	8	16	9	17	9
TCGCAATAAGTTGTTC	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
GCGCCTAGTGCATAAC	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
ATACGCTGTCTCGTTA	alt_2278_negative	12	29	18	25	38	15	46	14	42	14
GCAGTGTGTGCCCCGA	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
TAAAGACCGGGTTGCG	ref_2278_negative	17	26	34	16	28	10	28	25	29	10
CCTTGCCTAGTTATGC	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
TTCAGGTATAACACTT	ref_2278_negative	13	17	18	16	12	10	26	9	13	13
GCCCATGTAGGGCGCT	ref_2278_negative	28	53	22	22	48	21	51	21	46	22
TTCTCCGTGGCGTTAG	ref_2278_negative	22	49	38	35	59	36	52	42	66	30
GCTGGGTATTGTTCCG	ref_2278_negative	0	0	0	0	0	0	0	0	0	0
TATAGGGTCCATCCCA	ref_2278_negative	8	20	10	8	20	10	23	16	19	7
CCATCACTTTTATTTT	ref_2278_negative	3	14	4	7	13	2	21	7	17	4
CCTTCTAAATATCGGT	ref_2278_negative	0	6	3	4	5	0	2	1	2	3
CTGTTCGTCCACGGGC	ref_2278_negative	0	1	1	1	1	1	0	0	1	1
GGACAGGTGGGCGTGT	ref_2278_negative	0	0	1	0	1	0	0	0	0	0
CAGCAGTTGTGCAGTT	ref_2278_negative	30	53	48	27	50	25	47	21	67	25
AGCCGGGAAAGTATAA	ref_2278_negative	24	36	28	20	25	20	51	17	26	13
CGCCTGGCAAGGCAGA	ref_2278_negative	78	99	98	92	115	57	143	57	129	66
GATTCGATACAATCTC	ref_2278_negative	36	46	36	41	60	34	47	26	70	34
CGAGCTTCTGGCATGG	ref_2278_negative	7	33	14	19	45	17	40	20	50	14
CCATGTCGTACCGGTG	ref_671_fdr	56	28	79	69	55	68	49	58	44	58
GGTTATATGTCGCCGT	ref_671_fdr	76	32	77	77	32	66	34	56	41	53
AGCCACGCTATGTTCG	ref_671_fdr	55	29	66	49	31	40	37	51	45	67
GCCTCTATGGGGTCTG	alt_671_fdr	94	40	109	94	55	98	54	119	58	104
GTCTGCGTCTACGTGG	ref_671_fdr	8	8	14	12	7	7	8	12	2	10
ATTATTTTGTGTGCCT	ref_671_fdr	10	10	15	15	10	13	9	20	15	10
GTCGGGAGTCGCACAT	ref_671_fdr	27	22	44	24	20	34	19	42	14	26
CCTTACTAGAGCAAGC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAGTCCTCCGTGA	ref_671_fdr	6	1	3	3	0	1	6	8	3	1
CGATCACCAGTTTTTT	ref_671_fdr	30	21	34	29	19	19	26	26	22	18
GAGAACTTTTGCTGTA	ref_671_fdr	38	22	53	40	17	47	30	40	16	32
GTGTTAAATATCCACC	ref_671_fdr	68	35	71	78	31	40	41	46	35	55
GCGTCGGTTTTTGTCT	ref_671_fdr	37	17	29	42	19	37	35	29	18	32
CTTTTTGCCACCGGGT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CCGTATCTTACCCAGG	ref_671_fdr	114	79	117	90	73	78	88	87	95	68
GTCTACAGGTCTTGAT	ref_671_fdr	1	0	1	1	1	0	6	3	3	0
CCTTGAGATGATCGTG	alt_671_fdr	16	19	14	14	31	13	26	12	23	9
TAAGTCGGTTCGAAGC	ref_671_fdr	15	9	23	25	15	15	14	21	10	26
CACTGCGAACACGAAT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
GACGTCTAGCTACATC	ref_671_fdr	13	3	13	13	7	11	14	12	8	11
GATTAGGCAGTCATTT	ref_671_fdr	63	41	80	76	41	68	52	69	32	60
CGACCAAGGGTGGGCC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CCGGGACCCTATGCGC	ref_671_fdr	19	11	12	13	16	12	12	15	17	10
GGTTGGAACGCTAGGC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTGACCTCCTTG	ref_671_fdr	83	52	84	108	38	76	81	54	66	80
TCATTTTTAGATGGTA	ref_671_fdr	75	27	79	50	26	51	19	50	26	38
GACACTTTGGGTTCAG	ref_671_fdr	482	260	638	529	283	464	336	467	340	454
TAACGTACTATAAGTC	ref_671_fdr	49	23	72	44	42	29	34	47	22	39
TTTCTGCTGCTAATAC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGTGCGGCGGCTT	ref_671_fdr	11	7	9	13	9	9	8	15	9	13
GTAGTCCGTTACGAGA	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGATCCATTGATC	ref_671_fdr	9	7	16	12	8	10	7	16	9	9
TCAGATTTAAAAGTCA	ref_671_fdr	41	18	35	16	17	21	11	28	15	25
CAGTTTTAAGAAGTAT	ref_671_fdr	68	35	86	54	34	59	46	57	51	53
GTTCGGTCCGCGATGT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCGGACCTAGTTA	ref_671_fdr	13	11	20	16	12	16	11	17	17	27
GCCATCCGAATTTGTG	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTCCACGTTCTCC	ref_671_fdr	19	19	31	23	20	32	15	19	18	22
TCAGTCATGATCGAAA	ref_671_fdr	109	72	142	125	77	98	83	102	94	97
GGCAGTCCTATTTATA	ref_671_fdr	104	64	129	111	64	130	54	120	67	105
ATTCATGGCGCAATTT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
TGCAATTGCCAGTCGA	ref_671_fdr	65	47	60	59	34	52	39	74	33	51
CATATAAGACCTCTGT	alt_671_fdr	73	82	75	83	96	73	86	61	98	66
GTATTGTTGTAGACTG	ref_671_fdr	14	12	11	12	12	14	11	13	17	15
GCGCGTCCCCTTTGTG	ref_671_fdr	140	101	189	157	88	150	90	109	101	122
TTTTAATCCACCTCTT	ref_671_fdr	12	2	14	11	6	7	11	16	6	11
GCTTTCCCATAGTGGT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTTATTATATAT	ref_671_fdr	65	50	87	74	55	69	49	63	45	57
CTGGTTATTTGATGCG	ref_671_fdr	126	88	175	144	87	135	79	120	96	110
CTTTACATGACTTAGA	ref_671_fdr	32	13	30	34	11	22	17	25	22	29
ACACTAACATACGAGA	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCACCTTCTGCAA	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CTCACTCTTTAATCAT	ref_671_fdr	29	22	39	28	25	31	19	20	20	32
GATTTGCAGTATTCAT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
TTGACGACCGGTTAGG	ref_671_fdr	16	5	22	13	7	19	8	23	7	22
GGCCATGAGGGGTTCG	ref_671_fdr	34	19	36	33	21	32	14	25	14	30
CAATAGTTAGTGACGC	ref_671_fdr	86	60	70	53	35	77	51	79	61	74
ACAGTGTTTGGTTTTC	ref_671_fdr	73	50	88	77	70	87	66	72	58	75
AGCTCACGTCTCCATG	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAATTCGCTTTAG	ref_671_fdr	15	6	24	5	10	9	6	12	6	7
CTCTCTTTGTTGCTGC	ref_671_fdr	22	21	31	21	22	16	27	18	16	20
GAGACTATGGGAATCT	ref_671_fdr	31	16	53	40	19	46	30	43	22	39
AGAACTTACCTTCGCC	ref_671_fdr	4	17	5	7	13	4	31	3	31	8
CGTCTATGGCCATAAG	ref_671_fdr	106	80	135	117	85	103	68	105	63	91
GGGTTTACGGAGTGGT	alt_671_fdr	75	60	81	84	49	81	51	83	49	63
CGCTCGGTCAGATGGT	ref_671_fdr	75	39	90	78	34	75	35	69	42	77
ACCGGATCATTCTCCA	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGAGGTGATATC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CAATTTTGGTATCCTT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTTATGCTGTGA	ref_671_fdr	40	12	29	30	20	18	28	24	28	28
AGCGGAGTTGGTGCCT	alt_671_fdr	46	21	60	50	28	44	23	45	28	35
GTAATCCAAAAGATTC	ref_671_fdr	2	6	3	2	6	1	4	3	8	4
GGTTCCTTTGCCGACC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGACCTAAGTTTC	ref_671_fdr	39	22	58	43	27	24	23	38	20	31
AAGGCTTCCCCATATC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCTAAGAGAGGTC	ref_671_fdr	52	37	74	65	33	64	58	47	41	62
AATTATGCCCACGTTG	ref_671_fdr	149	79	167	156	72	141	98	121	75	133
CGTGGCGTCAACAGGC	ref_671_fdr	36	27	33	44	32	44	34	35	42	34
CGGTCGGGCTAGTATT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
CATCGTCCTACAGTTT	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
GTAGACCCTTTTTAGT	ref_671_fdr	12	8	20	18	4	17	9	12	8	14
CTCAGCCTCTAATCTC	ref_671_fdr	35	34	30	25	23	25	26	27	25	22
TGCATGTCAAGATACC	ref_671_fdr	259	166	334	248	157	276	157	265	163	257
ATATGCCGTCCAGATC	ref_671_fdr	46	31	59	84	36	58	39	43	35	60
GACGGTCTATCTCTCC	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
GCCACGTCGGGCTTGA	ref_671_fdr	13	7	13	10	13	10	14	7	13	9
GTTCGTCTTGTGTACG	ref_671_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTACTTTACCCTG	ref_671_fdr	132	95	158	132	84	155	97	124	76	110
TTATGCCCGGGGGTGT	ref_671_fdr	5	4	4	1	1	6	1	5	0	2
ATCTCTCAAACAGCCT	ref_671_fdr	29	12	52	39	28	20	20	26	36	25
TGTCGTAGTTAATATC	ref_671_fdr	13	12	12	10	7	12	12	9	13	13
GTTAGCACCACTCCTA	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
AAAAACTCCTGTACCT	ref_3331_upstream	190	158	206	172	135	160	141	187	145	155
GTTCTTCGCTTGCTGC	ref_3331_upstream	225	137	257	229	131	204	161	203	161	172
GAGATTCCAAGAAGCC	ref_3331_upstream	71	50	81	83	45	59	58	72	38	61
ACTCCTCACGAAGCGA	ref_3331_upstream	1	2	4	1	0	5	2	2	0	0
TCGCACACCTTTAACT	ref_3331_upstream	145	123	150	137	115	138	101	144	123	129
GCCTGTACCACCCTCA	ref_3331_upstream	49	60	82	55	57	55	70	47	66	57
ACTCACCCTGCAGTAA	ref_3331_upstream	62	52	66	65	35	57	44	42	39	42
GACGAATGAACAGTTT	ref_3331_upstream	20	8	22	19	13	14	16	13	10	10
CATTTTTGGTTCTCCA	ref_3331_upstream	106	60	99	110	66	98	63	94	76	80
CTTTTTGTTACACATC	ref_3331_upstream	217	150	234	204	129	225	150	192	141	170
CGCTACAAGTCCGACT	ref_3331_upstream	16	10	20	29	18	15	21	23	22	9
AAGTATTTCGACCCTA	ref_3331_upstream	13	10	20	9	7	5	5	6	17	6
AGTGTTCACCTTGTCT	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CTAGTTGTGATCCGAT	ref_3331_upstream	18	15	20	11	17	22	8	14	17	21
TTCGCATTCAACAGGG	ref_3331_upstream	8	12	6	6	2	1	4	5	5	7
CTACCAAGCCTGGTTT	ref_3331_upstream	61	29	49	45	30	45	43	31	30	51
CGTTGTCAGCGCGTAT	ref_3331_upstream	32	22	48	26	28	40	20	36	25	48
CTCAGAGGTAAAGCCC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATTTATCCTGAT	ref_3331_upstream	26	17	23	13	9	19	22	23	8	25
GCAAGTCTGATCATGA	ref_3331_upstream	47	24	46	33	23	34	37	31	25	35
TATGTGCCCCGTGGCC	ref_3331_upstream	138	93	177	151	92	136	104	114	90	118
AAGTTTACCACGCGAT	ref_3331_upstream	138	102	184	159	92	155	109	123	102	139
TTTTTCATTAAATTGG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
ACCGACATTTTATGTT	ref_3331_upstream	8	1	10	9	2	2	3	3	2	2
AGTCCGCACAGTATCA	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTGTTGATCACGG	ref_3331_upstream	34	9	48	26	18	14	7	22	13	17
GAGGATAACTGGTTCA	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTAAGCTTTGTTAATT	ref_3331_upstream	117	83	151	141	86	116	94	117	75	97
CTCTGGTTTATTATAC	ref_3331_upstream	33	28	76	42	47	49	58	66	44	35
CCCCAAATCGTCTGTT	ref_3331_upstream	26	13	18	11	12	22	8	16	22	18
TCATATTCGCGTCCGC	ref_3331_upstream	44	33	44	53	29	37	41	36	46	47
CAGATTCAGTTCAATG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
ACACAAATGGCATCGC	ref_3331_upstream	65	37	80	72	35	59	42	66	43	67
TATGTTTTTATGATTT	ref_3331_upstream	165	92	203	220	131	161	104	182	99	150
GTTGACTTCGCTCGTG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCATGTCAGAGAA	ref_3331_upstream	30	30	33	49	26	33	22	28	22	31
ATTTGACGCGCGCACC	ref_3331_upstream	80	60	85	81	64	83	66	65	56	54
TTATAGATTTTATCAA	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CTAAATCATCTGGTAC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TAATGCATACACCGGA	ref_3331_upstream	478	339	569	511	292	462	388	484	402	441
TTGCGCTTTTCATGCA	ref_3331_upstream	9	9	13	12	7	11	13	12	14	13
GGGCTCCCTCTGTCAA	ref_3331_upstream	61	54	75	82	41	59	48	78	61	70
TTTGGCTACGACCATC	ref_3331_upstream	104	87	135	99	93	119	95	125	99	87
ACCCGCCCGCGACATA	ref_3331_upstream	61	36	74	68	56	53	45	52	59	43
GTGTGTGGCATATTCG	ref_3331_upstream	114	97	137	110	85	96	95	116	96	113
CTTGCATGAGGGTTAA	ref_3331_upstream	40	34	43	40	28	51	21	36	34	34
GAATGCTATAAATTAC	ref_3331_upstream	32	43	54	32	31	35	36	46	17	19
CGTCGCGACGCGACGC	ref_3331_upstream	39	14	41	43	23	23	19	32	21	25
GGAATCCGCAAGCTTC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGCGCGTTCCACA	ref_3331_upstream	26	16	31	27	13	22	26	15	20	19
ACCTGTATCCATTACG	ref_3331_upstream	27	20	40	38	14	24	15	29	33	24
TGGCTCTTCGTCTACG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGCAACCCTCTAT	ref_3331_upstream	19	21	30	19	23	19	10	19	22	27
CGCATCCGCACGCTGA	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TATCGTTGGTCACGAT	ref_3331_upstream	58	41	82	74	53	66	48	53	52	53
ATCATCCGGTACATCT	ref_3331_upstream	5	8	10	5	5	9	6	8	13	9
ATCGCCTTCTGGAAGG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
ATAAGCTTCGACTGGT	ref_3331_upstream	27	25	22	29	27	43	26	37	23	31
GCCCGATTTTAGTAGA	ref_3331_upstream	28	21	40	37	23	25	23	16	27	34
TACACGGACCAGCGTT	ref_3331_upstream	25	10	16	17	12	12	11	25	10	14
CGGTCGTAATACTGGC	ref_3331_upstream	76	39	90	71	53	60	59	64	64	79
GCGCTTGGACTGCCCT	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGCCCTGTTTAGT	ref_3331_upstream	13	11	12	14	12	5	10	11	9	12
GGTTGCCGAAAGTTTT	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGTCATCACCAT	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
GACCATCGTTTCCGTC	ref_3331_upstream	38	25	53	44	38	28	38	38	35	40
ACGGGACTTTCGATAT	ref_3331_upstream	355	180	406	355	213	298	234	338	192	275
TTGAGCATTCCATATT	ref_3331_upstream	59	37	55	51	50	41	35	48	35	53
TTTGGTCCTAATGATT	ref_3331_upstream	265	221	343	268	216	220	241	252	247	215
AGTCGTGCGCTTTCGA	ref_3331_upstream	170	97	194	215	110	164	136	143	145	148
GTTAACAACTGATGAG	ref_3331_upstream	7	11	16	14	5	6	3	0	8	9
CCAGGCTCGCGTAGGC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
GTGCATGCTACAGAGG	ref_3331_upstream	80	54	68	55	34	48	57	53	49	51
ATCCCTTTGGCTCGCC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TATGTAATGGCTCCGC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TATTCGCAGCTGGTAG	ref_3331_upstream	26	12	16	19	15	19	17	12	18	11
CTTTCAGCTCCCCTTA	ref_3331_upstream	3	0	4	2	1	1	1	1	5	2
TATGCGTCATCATTAG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGCTCCGAGGCTT	ref_3331_upstream	107	57	118	71	54	71	50	82	66	77
GCGATGCAATTCTCCG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TGGACTGATTATATTA	ref_3331_upstream	20	21	24	35	27	19	22	23	9	20
TGCAGAGTTAACGGTC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
AAACCATTGATGTAAC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCAGTGTTCAGCA	ref_3331_upstream	71	48	79	76	50	76	46	59	66	55
TTCTGACATCTCCACG	ref_3331_upstream	50	49	50	49	58	36	32	39	54	48
GCTGCTGGAATCCACC	ref_3331_upstream	57	49	90	71	35	77	45	72	38	71
CGCGGAATCCTTTGTC	ref_3331_upstream	149	112	188	157	91	148	91	149	106	151
TCTGCTTATCCCTGTC	ref_3331_upstream	8	12	16	14	22	12	17	8	14	11
CATACAGGAAGACTCG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCAGGACTTCGGT	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CATTATCTGTATCCTT	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CTATCCATTAAGTAGA	ref_3331_upstream	1	0	3	4	0	2	0	2	5	3
GCTCCAATGGCTGGCC	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
GTACTCGTGCATTTTA	ref_3331_upstream	61	56	74	64	56	58	54	61	50	54
GGCAGTTAGGGGTCAA	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGCCCATGCTCCG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTTATGTTTTTC	ref_3331_upstream	24	11	30	32	17	39	21	31	5	26
GACTTCGTGTTTTGCC	ref_3331_upstream	14	6	11	10	9	11	4	10	3	4
TTCGCCAGATTTAGTC	ref_3331_upstream	119	87	145	131	74	94	118	132	105	101
TTAAATCTCGCACGGC	ref_3331_upstream	71	51	90	74	45	65	49	74	56	58
GGCATACGGGGGGTTC	ref_3331_upstream	9	16	15	12	19	18	13	13	13	15
ATCCTATCGAGATCTA	ref_3331_upstream	24	12	15	23	6	12	14	15	11	20
CGGCGGCTCGGGTTTT	ref_3331_upstream	68	47	90	79	39	53	39	78	43	69
CAGTCAACCAACTTTA	ref_3331_upstream	8	8	10	14	6	4	10	13	10	6
TAAGCTAACTGGGATC	ref_3331_upstream	149	110	235	193	103	149	143	113	167	121
CCGTTGCACCATTAGG	ref_3331_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCGCGCCTTCTAG	ref_3331_upstream	14	11	23	27	25	24	10	22	14	23
AACGTAGGTTGTGGCG	ref_2272_reverse	6	14	15	14	13	11	13	8	9	8
TCCCACCTAGCTAAGC	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
TCAAATCTTGTGTCGA	ref_2272_reverse	9	18	14	8	16	18	20	11	9	2
GGGCAGTCGAAATTTT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTAGGGATAGTC	ref_2272_reverse	12	12	8	4	10	10	16	6	11	14
GTACAATACTTGGTGT	ref_2272_reverse	113	163	132	121	167	106	199	126	193	99
TTCTGTTTCTTCCCAT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCACGCGGAGATG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTGCAGAATAGAG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGCATATTAACTG	ref_2272_reverse	33	59	35	41	62	36	54	34	70	41
CCCATTTGTGTTGTTG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
AGACCTGCCGGATGAA	ref_2272_reverse	53	94	84	66	93	55	76	54	97	55
CGTCATTACTGCTGTA	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTGCGGTGTCTCT	alt_2272_reverse	226	327	301	243	335	237	382	221	399	189
CTGGCCTTTTCGTATC	ref_2272_reverse	74	53	61	43	70	39	52	44	52	41
GCGGACATCTTTTTCA	ref_2272_reverse	36	34	33	40	48	37	42	29	39	26
GCTAGAGTCCCGCCCA	ref_2272_reverse	44	57	52	41	60	33	62	37	69	50
TTAGACATAGCAATTA	ref_2272_reverse	116	166	152	151	154	119	161	125	165	100
CAGGTCACGCTTACGG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTACGCTTCCGCA	ref_2272_reverse	25	44	37	26	31	31	28	33	24	24
CTGAATTCCGACACTT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
GCTGACTGTGCTCGTA	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
CCATCCTGCAGCCTGT	ref_2272_reverse	10	38	20	16	31	8	25	17	32	21
CAGCTTTTTTGCGCTT	ref_2272_reverse	17	31	21	16	30	19	20	23	27	20
TGTTAATGCGCACCCG	ref_2272_reverse	3	10	11	5	6	5	11	4	9	9
GAGCGCTGCGCCATGC	ref_2272_reverse	25	26	27	39	28	36	38	27	47	27
GCACTTGTTACTTTCG	ref_2272_reverse	47	89	53	47	88	47	87	56	68	56
TCTGTAGTCTGACAAC	ref_2272_reverse	42	64	50	31	85	39	63	44	82	32
TGGTTGTTTACTTTGA	ref_2272_reverse	37	38	45	45	61	42	49	26	60	32
GAGGACACAATGACTG	alt_2272_reverse	94	121	101	90	135	82	135	86	136	78
GTTAATCATGCGTGCA	ref_2272_reverse	5	10	12	3	9	7	8	6	10	3
GTAGTCACCTGTCGGG	ref_2272_reverse	19	34	30	23	33	19	28	12	44	12
AATACATGAACGCTTT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCGCCTCCACTTG	ref_2272_reverse	2	1	5	2	3	4	3	1	1	5
TGGTGAGCACGTCATA	ref_2272_reverse	19	30	23	15	18	7	26	21	33	15
TCATGTGCAGTGCACA	ref_2272_reverse	5	6	8	5	6	4	9	1	9	3
GGGTCGCTTCATCTTC	ref_2272_reverse	46	40	51	59	46	45	46	49	46	43
GTTCTCGCCTACGAAA	ref_2272_reverse	36	62	50	34	70	33	67	43	88	38
GTTATTTGCTGATCGA	ref_2272_reverse	14	18	11	9	11	10	14	8	16	5
GCGAGTTATGACCCCT	ref_2272_reverse	12	31	19	13	22	11	19	11	26	15
ACCATGTGAAAGGCTT	ref_2272_reverse	185	309	208	217	357	193	343	159	342	189
CAGGTGGGTGTCAGAC	ref_2272_reverse	32	41	23	31	45	21	30	34	39	26
ACTTCAAGCGCACGAG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
GATACTCAGCCTAGAA	ref_2272_reverse	11	16	8	5	14	7	11	4	8	4
CCGCATTGGGGGTACA	ref_2272_reverse	5	7	10	2	9	3	13	6	6	4
GGTTCGCGGTGTCTCT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
CATTCCACGGGGTTTC	ref_2272_reverse	15	15	7	11	16	13	16	5	6	13
AAAGGGGGCTAGCTGA	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGACCAGCAACTG	ref_2272_reverse	126	166	119	129	170	106	149	110	162	86
CCTCGGAACTCAGGGC	ref_2272_reverse	30	61	55	26	69	30	75	30	85	33
TTCGGAATTATCGGTT	ref_2272_reverse	9	9	10	4	8	9	13	17	17	17
ATGGTATCCCGATTTC	ref_2272_reverse	0	6	3	8	3	5	9	1	6	4
TATTCAATATTGTTCT	ref_2272_reverse	52	79	75	77	55	60	75	61	66	72
GGGTAAAACGCTAGGC	ref_2272_reverse	1	3	1	2	7	3	3	1	4	1
CACGCGTATCATATGT	ref_2272_reverse	48	32	31	36	54	38	43	24	44	24
TGTTCGAAAAAAGATT	ref_2272_reverse	12	28	21	15	34	17	20	13	17	7
CCGTATGAATGTTGTC	ref_2272_reverse	9	22	15	7	9	4	12	7	13	8
TAGTCCTCGATCGGGA	ref_2272_reverse	72	94	67	64	92	63	104	44	105	60
CTTTCGTTATCGCTTG	ref_2272_reverse	30	32	47	27	40	27	32	30	31	34
AAATCCAGTGATCTCG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
AGAACTCTGCTTGGTC	ref_2272_reverse	3	6	7	3	8	6	18	2	5	4
CTCTTCCAAAATAGCT	ref_2272_reverse	14	10	18	12	12	8	15	16	19	12
AAGGCCTAGTCAAAGT	ref_2272_reverse	19	22	20	13	19	13	22	20	20	15
GTTGCATCTTAGATTA	ref_2272_reverse	30	27	18	29	30	29	34	27	29	20
CTTCGCGTAGAGGTCA	ref_2272_reverse	18	23	17	14	27	13	27	16	31	15
TTACGGGCAGCGTCCA	alt_2272_reverse	46	67	84	65	70	46	87	59	73	46
TACGAGGTCCCGATCG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGCGACGGCACCC	ref_2272_reverse	50	52	65	45	55	34	42	38	52	44
AGTCCCTTGCTTAGGC	ref_2272_reverse	0	3	1	2	5	2	3	2	5	1
GCTTCTGCCTGCACCT	ref_2272_reverse	13	13	7	11	23	13	21	11	16	10
ATAGCGCGAAATAAGC	ref_2272_reverse	43	56	55	53	57	52	85	46	73	37
TTATTGCAAACAATGG	ref_2272_reverse	21	15	19	11	24	11	20	8	16	9
TAAGAATCTTGGCGCT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
AACCGCTTTAGTATTC	ref_2272_reverse	35	73	45	33	57	40	77	28	79	27
GGAACTCAGAATTTTG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCTGGATCACTTT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
AGAGATCCTTTCAACC	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
AAACAGTCTATTATAC	ref_2272_reverse	42	76	46	35	68	34	52	41	71	46
TCCCGCCTAGCTAAGC	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTACGTCTCCCCT	ref_2272_reverse	2	14	1	0	17	0	9	0	14	1
AACGTACTTAAACGTA	ref_2272_reverse	4	3	3	5	5	3	7	9	13	4
CATCATCCGTTTTCTA	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
CGCATATTTAGGAAGT	ref_2272_reverse	15	20	22	22	23	20	16	20	29	25
GAAAAGCCACATATGG	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTCACTCCGCGCT	ref_2272_reverse	7	18	0	0	24	3	19	0	17	3
TGCTAACTCTTATAGA	ref_2272_reverse	9	12	7	8	10	3	12	5	19	3
GAATCTGGTTCCTAAC	ref_2272_reverse	37	32	37	23	38	35	51	39	41	32
GTCAATTGACCGAACT	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
GTTACCTTCCCAGGCC	ref_2272_reverse	22	22	18	19	29	23	21	33	39	18
CGTTCTGAGTTATCTC	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTCGGGCGCACTA	ref_2272_reverse	12	27	23	12	36	18	24	31	32	21
TCGATAGCATTTAAGA	ref_2272_reverse	19	42	31	30	41	24	36	41	51	32
TACTACGTTTGCTGAG	ref_2272_reverse	6	17	20	17	14	7	18	12	14	8
CTTGGCATGCCGGATC	ref_2272_reverse	0	0	0	0	0	0	0	0	0	0
TCATGGTTAAATAGCA	ref_2272_reverse	79	104	105	80	133	79	124	82	118	77
GTGATTCGTCCTCTAA	ref_2272_reverse	14	21	15	13	14	12	11	18	17	10
CTCATCTCCGTTGGAT	ref_2272_reverse	2	7	1	7	9	8	2	4	13	4
GTTACGTTTGTTTATG	ref_2272_reverse	8	11	2	5	6	3	5	2	5	6
CCGGTGGCTAAAGTGG	alt_2272_reverse	128	203	123	129	201	135	207	114	226	108
CAGAGAACAGAATCAC	ref_2272_reverse	6	6	9	7	12	4	10	5	11	4
CTTCTTTAATGGCACC	ref_2272_reverse	6	11	14	7	15	3	7	5	24	5
CCCCGGGATTGTTATG	ref_2272_reverse	69	133	84	63	142	59	138	64	173	58
GAGCCCTGATCGAGTC	alt_2272_reverse	131	181	163	154	170	136	234	106	230	147
CTCCCCTTGTTCGTGG	ref_2272_reverse	3	4	5	2	7	0	11	2	9	1
GGCCAATAAAGTTCTA	ref_2272_reverse	27	51	24	32	48	25	59	16	42	22
GTCGCAAGTTTCCCTT	ref_2272_reverse	4	6	4	6	3	4	7	0	4	2
ACGTACTAGGTTGTGA	ref_2272_reverse	8	18	10	1	12	5	15	5	17	8
GGTGTTGCGGGTGGGG	ref_2272_reverse	20	28	18	8	25	20	28	13	21	15
CTCCCTTTTCTAGTAG	ref_2272_reverse	8	14	6	4	20	6	12	5	17	3
AACCATACCATCTTCG	ref_2272_reverse	63	179	112	91	216	69	216	79	219	71
TACAATTCAGTTAAAA	alt_2272_reverse	26	49	31	30	43	17	46	32	64	25
ATTATAGTAAGTTGGA	ref_2272_reverse	30	34	39	31	37	31	57	33	52	39
GCAGGGGTGCGATTTG	ref_2272_reverse	15	32	27	23	30	21	41	19	44	17
AGGGCTAGTATTTACT	ref_2272_reverse	52	79	54	49	98	43	76	50	111	60
GCGAAGCCATCAGCTA	ref_2272_reverse	52	84	48	48	101	44	80	36	82	43
TGCAAGGTCCTACTCA	ref_2272_reverse	22	24	12	10	29	18	24	18	24	14
TCCTGGCTCGCCTTAA	ref_5766_new	49	48	59	56	67	45	61	55	49	48
TTGGTTTATACAATGC	ref_5766_new	66	83	58	59	84	63	83	71	64	51
CCATATGCCTCGGGGA	ref_5766_new	2	17	5	4	5	6	16	4	16	3
CCCGTGTTTGGCCGAC	alt_5766_new	28	69	39	38	80	41	80	42	94	29
TCCTTCACTCAGAAGC	ref_5766_new	10	12	14	13	7	15	7	15	15	11
GGCGGAACTGATAGAT	ref_5766_new	204	184	252	226	207	202	200	206	211	183
CCTCAATCGTTTAATT	ref_5766_new	0	0	0	0	0	0	0	0	0	0
CATCTACTCAATCGCT	ref_5766_new	10	16	32	20	26	23	18	15	18	12
CTCAAAAATAAAGTTC	ref_5766_new	2	3	1	5	6	6	5	6	10	5
TCCCTAAACGACATAG	ref_5766_new	44	55	47	44	44	36	46	43	50	48
TCCGGGACGCACGGGG	ref_5766_new	77	63	84	72	81	87	53	71	87	73
CGCCTCAATCAGATGG	ref_5766_new	10	14	18	16	18	11	19	5	16	16
TTTGGGAATTCATTGA	ref_5766_new	26	11	19	17	21	19	21	13	22	10
TAATACCCGTGGAGCA	ref_5766_new	8	10	13	9	5	11	14	8	9	9
TTACGTACTGCTGTTA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
AGGTTGCGGACTAAGT	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ACCGTTACTGCATGCA	ref_5766_new	125	129	146	126	129	120	144	119	145	107
TCGCTTGCTACCTGCC	ref_5766_new	15	15	36	8	20	22	25	15	21	13
GTGGCGGACTCCATAC	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TCTCATACCCTAGTAA	ref_5766_new	14	19	19	22	15	14	12	26	18	8
GGGGCTTAGTTGCTGC	ref_5766_new	43	30	57	36	33	36	54	45	38	25
GCGGACGCATGGCCAG	ref_5766_new	59	39	69	65	35	49	45	61	39	30
CCACCCGTATGTGCTT	ref_5766_new	7	6	4	3	5	7	12	4	15	2
AGTAGTATCAAACAAG	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TATCAGACTTCCAGAA	ref_5766_new	31	28	42	32	28	35	34	31	45	30
GTTCCTATGATCAGCC	ref_5766_new	6	6	4	5	5	3	8	0	3	4
TCCATCTTCTTGAAGA	ref_5766_new	10	6	12	8	9	6	15	8	4	8
AGAGCACCTATTTCGC	ref_5766_new	0	0	0	0	0	0	0	0	0	0
GGCTGATCAATGTTTT	ref_5766_new	1	1	2	2	0	4	2	1	1	2
CGGCATGAAAGACGTC	ref_5766_new	13	29	15	14	17	9	21	10	21	13
ATATTGGCACCGGCAA	ref_5766_new	11	13	18	9	15	17	6	16	13	14
AGGGTATGCCCTAGTT	ref_5766_new	19	13	35	23	15	18	12	13	20	18
AGCGTCTCGGCACCGA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
CACTGTAGTCGTTCAT	ref_5766_new	38	33	43	28	35	44	44	21	32	28
CTTTTTCATCCCTAAA	ref_5766_new	34	31	32	30	30	20	36	26	25	23
CACCATGGAGGGTAGG	ref_5766_new	107	89	139	102	82	95	83	111	96	104
ATGCGACCGCCTGGTC	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TCTATTGATGGTAGGG	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ACACATCAACAATCGT	ref_5766_new	48	53	55	59	54	58	54	34	50	43
TCGGCAGGCATCCTTA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ACTTAGGGAGTATTAT	ref_5766_new	125	112	128	127	118	105	115	122	110	96
CTCGGCCTTCTATGTA	ref_5766_new	3	7	7	3	4	2	6	4	8	5
ATTGGTTCATATTTAC	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ACCGTTTCAATCCTTA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TAACCCTGAAGTTTAC	ref_5766_new	35	27	38	27	30	43	37	29	33	37
GTTTGCATATCGGATA	ref_5766_new	6	17	11	10	7	7	7	9	10	11
CCCTTCTGTTCAAACA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
AATATCCTCTGAGATT	ref_5766_new	0	0	0	0	0	0	0	0	0	0
CGCAACATATACCTGT	ref_5766_new	6	4	18	7	14	7	6	4	4	8
CATAAGCTAGGTTTTC	ref_5766_new	90	80	120	98	82	80	110	96	107	65
CCAATTAACTACTCAT	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TTCGGGGTTAGCATTA	ref_5766_new	43	50	49	55	62	48	65	46	60	47
TGTGCAGTGTGTTTCT	ref_5766_new	4	9	6	11	2	6	3	2	9	9
ATCTTTTTTTAATGAG	ref_5766_new	13	19	18	12	16	17	22	21	15	12
CTAATAATTCGCTTCT	ref_5766_new	15	19	31	24	15	14	22	18	18	19
GTATTTATATTTAGAA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ATTAGACGTGAAACTT	ref_5766_new	68	70	81	95	75	95	89	60	75	57
GGTCAGCGATGCGCTC	ref_5766_new	0	0	0	0	0	0	0	0	0	0
GCCGGTGTATAAGATG	ref_5766_new	26	31	32	29	24	17	34	16	27	20
CAGCCTCTTCAAATCC	ref_5766_new	18	24	19	26	22	15	13	21	29	24
CCGCTGTTCTTACATC	ref_5766_new	35	57	43	34	58	30	73	33	81	25
CACTCTTTTTAATCGG	ref_5766_new	3	7	11	4	7	1	2	10	4	6
AGGTTGCCGCAGAGCT	alt_5766_new	167	151	213	180	152	175	167	176	164	138
CAGTGACTTGCTTCTA	ref_5766_new	11	6	4	7	9	8	6	8	12	5
TACTGATATTCTAATG	ref_5766_new	18	8	21	25	18	17	15	9	11	14
CCTACACTCTGACTAT	ref_5766_new	24	34	34	27	26	19	31	27	36	26
GACCGAAGTGGTCAAC	ref_5766_new	37	27	33	34	35	35	44	24	38	20
TCCGACGCATTACATT	ref_5766_new	19	36	20	18	39	19	50	15	39	19
GCGATTAATTTCTGTG	ref_5766_new	13	9	14	16	7	14	11	11	8	11
ATTTTAGTAAGTGAGT	ref_5766_new	11	15	9	9	8	11	25	14	14	9
CTCGATTCTGCTTTGA	ref_5766_new	49	67	86	61	62	51	62	51	72	48
TAGCCTGTATATCATA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ACGTTCATGGGTTCCT	ref_5766_new	11	11	17	7	7	13	19	11	7	6
TCTGTTTCAGCCACCC	ref_5766_new	0	0	0	0	0	0	0	0	0	0
AACTAATCTGGATGAC	ref_5766_new	1	2	3	3	2	2	3	0	4	1
AGGCACCGCACGCGCA	ref_5766_new	62	80	82	67	112	59	88	71	107	65
TACTTTGCAAAGCTCA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TACAATTTTGATATGA	ref_5766_new	13	17	16	19	15	11	10	8	24	22
ATGTCGCCCTTAGTGG	ref_5766_new	28	37	31	45	34	43	49	34	53	31
CCGACCACTCCTACCG	ref_5766_new	8	10	8	3	16	2	12	7	14	3
GTTTCTGTCTTCCTGG	ref_5766_new	36	23	40	31	30	17	41	35	31	16
GTTAAGGTAACGCCCG	ref_5766_new	29	22	40	33	26	41	35	21	30	23
TCCAAGCGCTTAGTGT	ref_5766_new	22	30	25	23	11	20	24	17	17	24
TAGGCCTTGAACGGTA	ref_5766_new	11	9	19	2	16	11	7	4	6	7
CGCCGCGGACTTCGAG	ref_5766_new	0	0	0	0	0	0	0	0	0	0
CCGCACATAATCACAA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TTACTGTTTATATTCT	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ACTATTACAGGTAGTT	ref_5766_new	27	20	25	39	20	19	20	16	40	32
GGGTTGCGAATTCTCC	ref_5766_new	33	31	36	43	29	29	26	30	34	25
GTCTCAGCAATGAACA	ref_5766_new	110	91	119	101	112	92	105	99	105	75
CTAATTGTGATGGCCA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
ACTGTCAATCAGTAAG	ref_5766_new	20	25	36	16	23	19	21	15	25	14
CGACATTCGAGGGCTA	ref_5766_new	16	12	17	9	13	8	8	18	19	6
TGATATTCGTGGACTG	ref_5766_new	0	0	0	0	0	0	0	0	0	0
TTATTTGCTCCTTTTT	ref_5766_new	0	0	0	0	0	0	0	0	0	0
CAGTCGTTATCATCCT	ref_5766_new	0	0	0	0	0	0	0	0	0	0
CCACTTATTAACTGAA	ref_5766_new	4	1	7	4	2	4	8	5	5	1
CCATGACGTGGAACAT	ref_5766_new	11	7	3	2	3	5	7	3	5	6
ATATTGCCAAAGCTCT	ref_5766_new	17	16	22	14	19	20	15	9	22	10
TCTGGTTGGATACTTA	ref_5766_new	0	0	0	0	0	0	0	0	0	0
GGACTTCTACATAGAC	ref_5766_new	6	4	10	9	12	7	10	4	7	10
TTGATCTCGGGTGTTG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GGTGGTATCTGGATAG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CCGCCTTCGACTTTGG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
GTTCTACACTATTAGT	alt_5663_new	9	12	6	1	4	3	12	2	11	4
GGTAGTTTTAGTCTAC	alt_5663_new	7	22	12	1	35	12	17	10	21	5
GTAGTAGTCAGCCTCT	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CTTATATCGGGCCCCA	alt_5663_new	8	4	4	2	4	1	7	5	4	2
TGGTGCAGCAATTCTG	alt_5663_new	7	20	13	5	19	6	14	7	17	4
GACTTAGTTTGAATTC	alt_5663_new	9	12	5	8	22	5	27	7	23	4
GAATAACCATCGTGGC	alt_5663_new	45	115	65	41	106	40	91	52	92	51
GTGTCTGAGAATTTTG	alt_5663_new	49	98	55	57	91	72	96	48	109	51
TGCATCAGAAAGTAAG	alt_5663_new	10	26	11	10	22	9	21	15	21	9
TCTCACTCGCCGGTCT	alt_5663_new	10	19	18	7	15	4	12	6	22	9
GTCGAGTCAGTCAGGG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TCAGTTATTCTCACCG	alt_5663_new	3	5	4	2	13	3	6	3	5	1
GCTGAGCGTGGGAGAG	alt_5663_new	18	28	17	21	27	17	27	15	31	13
GCAAGGCAGTTGGCCC	alt_5663_new	40	101	50	44	120	38	95	54	105	37
AGTCCTGTGCATCGGC	alt_5663_new	1	14	4	4	12	2	5	5	7	4
CACCGGTTTTGTTAAC	alt_5663_new	1	17	0	2	20	3	12	1	16	3
GCAGAACGTAAACGTC	ref_5663_new	12	28	19	15	26	11	27	17	27	8
CGACTCGCCTTGACGA	alt_5663_new	7	10	3	9	8	3	7	2	8	10
GGCTAACAGATTGGCT	alt_5663_new	0	0	0	0	0	0	0	0	0	0
GATTTCGTTTTTGCTC	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CAAGTCAATAGATTCC	alt_5663_new	0	0	0	0	0	0	0	0	0	0
GAATCGAAGGCGCTCG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TAAACCGCGTTGACTA	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CAGCTTAAGTCCGCGC	ref_5663_new	15	19	11	12	29	13	29	11	28	11
GTCTATATGTGTTCTA	alt_5663_new	1	18	8	5	16	7	16	9	17	15
ACTACACCGATTTGCT	alt_5663_new	15	33	16	20	29	9	35	7	38	10
GTGATATGGTCTTTTA	alt_5663_new	32	73	42	24	73	29	100	25	98	28
TTCGACGTTTTTTGCA	alt_5663_new	13	22	14	8	36	10	37	15	39	10
ATTATCGGCTTCCCGG	alt_5663_new	24	32	22	28	33	29	31	18	38	9
TAAACAAGTGTTATCT	alt_5663_new	21	45	13	15	36	10	34	17	28	13
CGCGAATCATCACGTC	alt_5663_new	3	0	2	0	3	0	5	0	7	0
AAGGCGTCCAGGTCCT	alt_5663_new	0	0	0	0	0	0	0	0	0	0
GTCTTCGAATTGGTGG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
GTTTCCACGTTCGAAT	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TTATTATTACTCCACA	alt_5663_new	8	25	9	16	21	9	14	14	20	6
GCGCACTAGGAACGCT	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CGGCAGGCTTAGCGCG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TCTAGAATCTTTACGG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CGCACCAGCACCCGCT	alt_5663_new	8	10	12	4	13	2	18	4	16	7
CGTGTGACCCGTATCC	alt_5663_new	7	33	20	8	47	13	45	21	51	13
CGCGATGTTTTTATCA	alt_5663_new	14	15	10	7	12	14	12	6	18	6
TGCTTGCTTAACAGCA	alt_5663_new	29	64	27	17	66	22	61	25	70	19
AGTCGTCGTACAGGAA	alt_5663_new	3	4	1	2	4	2	4	2	4	3
CTCGTTTGTCTTCTAC	ref_5663_new	109	349	88	76	375	62	334	74	316	87
GAGGTGATGTGGGTAT	alt_5663_new	9	47	16	12	37	15	49	15	51	18
ACTGCGTCATACTCTT	alt_5663_new	21	45	16	10	50	22	43	17	45	14
TCTGGGAAGTCCGTCG	alt_5663_new	60	166	63	55	175	74	170	55	163	79
TCATTTTTATTTATTT	alt_5663_new	33	41	40	30	66	19	37	25	42	18
GTACAATGGGTCCTGG	ref_5663_new	39	70	56	44	85	39	72	41	68	33
GCCCGACATGGCATCT	alt_5663_new	11	11	11	12	13	16	22	6	15	7
CGGAAAGTTTAGACAC	alt_5663_new	28	54	34	27	54	33	75	20	79	29
TTTGGTGGGTGCAACA	alt_5663_new	13	20	11	13	27	8	24	6	44	12
GACAGCCAGGGTTACC	alt_5663_new	0	2	2	0	1	2	3	0	3	2
TCGTAGATACCTCTTA	alt_5663_new	3	64	8	13	50	2	75	3	70	8
ATCCGGGATGTTCCGA	alt_5663_new	25	50	30	19	41	19	51	19	64	23
TGAGTCTCATGATCTA	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TCGGTGTCCCATGTCT	alt_5663_new	2	7	2	1	7	4	7	2	3	0
TAGCTTCTGTTTACGC	alt_5663_new	13	23	22	11	18	15	18	13	36	16
TCTGTTGGGCTTCGTC	alt_5663_new	6	13	6	1	7	2	7	5	8	6
CTTGGTAATTCAATAG	alt_5663_new	10	28	13	7	16	13	29	5	12	4
AGGAGGTTCGTGTTTT	alt_5663_new	29	61	17	16	52	27	48	18	47	19
TTCTCGGTTATAATTT	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CAGACTTAGTCTCTTC	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TCGGGGTCTGTCTATG	alt_5663_new	8	32	20	11	23	10	30	9	28	15
AAACTCCCTGGGCAGT	alt_5663_new	5	24	12	11	21	12	18	11	20	13
TTTTTTCCGGGGCAGT	alt_5663_new	7	18	8	9	26	9	17	9	22	11
TATCTGGGCATCGTGG	alt_5663_new	30	78	43	37	79	29	79	25	80	31
GAAACGGACCGTGGCG	ref_5663_new	18	30	12	11	26	11	38	14	34	14
CCATAAGCCTAACTGC	alt_5663_new	34	98	34	34	72	19	81	32	77	34
GTCGGGAAAGAACGGC	alt_5663_new	0	0	0	0	0	0	0	0	0	0
GCCTCCCACTCAACCG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CCTATGGAGGATAGCA	alt_5663_new	11	28	12	8	25	9	29	13	36	18
GTCAATTTGTTTTGGG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TGTGCCCTTTCTACAA	alt_5663_new	20	40	20	18	29	10	40	18	35	23
AAGTCTGGGAGGTTCC	alt_5663_new	31	51	20	16	46	12	55	18	52	16
AACATGATCTGTTGCT	alt_5663_new	3	7	7	0	10	3	11	4	3	6
TGCCTTCGATTCCCGC	alt_5663_new	0	0	0	0	0	0	0	0	0	0
AATGTATGTGCTTTAT	alt_5663_new	8	22	10	11	18	8	13	10	24	11
ACCACCTTTGTGCACA	alt_5663_new	10	19	10	9	18	6	18	6	12	16
GTTCTCTAGCTTCGAC	alt_5663_new	11	41	14	12	23	17	35	14	26	4
AATGGTTGAAATTGTT	alt_5663_new	45	65	54	23	59	48	80	29	86	36
GACGTTTTGAAGCTCA	alt_5663_new	7	14	7	8	14	8	26	7	18	8
ATGATTACAGTTCCGC	alt_5663_new	2	6	4	0	5	1	7	2	4	4
TCTTTGTTGGGTCACA	ref_5663_new	56	184	76	85	189	62	196	66	205	67
CCCGCCGTAGACTATA	ref_5663_new	3	36	2	4	26	2	46	6	26	1
AAGATTTACAGGCCTG	alt_5663_new	11	26	11	10	24	20	21	7	25	7
TCGCTTGATGTTAGCT	alt_5663_new	25	55	25	19	60	24	67	23	59	27
GCAGGATTAGAGGGAT	alt_5663_new	23	52	23	29	47	25	35	14	52	21
TAGTCTTCAGCCCTAA	alt_5663_new	3	8	3	8	17	1	4	2	14	5
TGGGGTAATATTTACG	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CTGTATTCGCTGGCAT	alt_5663_new	9	19	18	10	12	10	22	11	33	8
CTGTCGGTTAAGTTAA	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TATCCGCTTCTAGAAC	alt_5663_new	0	0	0	0	0	0	0	0	0	0
TTAGAGACTCAACATT	alt_5663_new	34	75	44	30	72	35	85	40	79	32
TTACGGAGACCCCTCT	alt_5663_new	1	3	2	9	13	2	11	0	11	2
CTACGAAGTTTTATCA	alt_5663_new	20	46	37	20	50	19	54	25	59	11
ATAACGGACTTTTCGT	alt_5663_new	8	16	13	8	19	7	18	5	14	8
CGCCACTATACCCATC	alt_5663_new	6	10	12	9	23	10	16	6	28	14
CCTTCGGTTCTTTGAT	alt_5663_new	4	11	9	8	15	6	5	2	14	3
GGAATATGTTGCTGGA	alt_5663_new	16	37	27	25	32	20	24	14	39	15
TCTCTGGCAGGAGACA	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CCACTCGGGTGCCTTC	alt_5663_new	0	0	0	0	0	0	0	0	0	0
CCGGGAATCCATCTTT	alt_5663_new	19	36	15	28	31	19	41	13	44	29
CACTTGCTATGTTCGA	alt_5663_new	4	5	4	1	6	1	5	2	2	1
TTTTCGGACCGTATGA	alt_5663_new	12	18	18	14	8	3	15	9	30	15
CGCTCAATGCTCCAGG	alt_5663_new	12	29	11	18	33	14	26	20	38	15
GAGGCTTATGGCGTTA	alt_5221_RC	72	56	74	62	67	54	108	44	81	38
ATCGACTTTCCTGAAA	alt_5221_RC	11	24	18	11	20	15	24	15	21	11
TGCGGTGCGCGCACAA	alt_5221_RC	71	92	59	46	64	42	88	63	86	48
AGTATACGTGAGCCAT	alt_5221_RC	0	1	0	0	0	0	0	0	0	0
GCTATCGGTTGGTCTG	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
TCTATCTAGCCTGGAC	alt_5221_RC	10	33	21	14	33	12	39	15	34	11
AGAGTTCGGAAGTTCC	alt_5221_RC	6	13	19	8	10	5	16	9	15	6
TTAGTTCCGGTGTGAG	alt_5221_RC	45	61	42	43	62	42	64	26	68	33
AAATACCTGGACTCCC	alt_5221_RC	40	43	47	26	56	32	39	26	56	22
TGTAGACAACGACTTA	alt_5221_RC	65	131	93	68	136	70	142	68	137	41
GCGTCTCTTCGCTATA	alt_5221_RC	25	37	31	27	39	16	50	36	48	27
TCCACAGGGCTCCATT	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
CGGTGTGGAACCAGAG	alt_5221_RC	276	431	363	317	442	271	494	271	433	233
TGTTTGACCATCGGTT	alt_5221_RC	78	120	87	67	124	66	135	78	143	83
TTTCAATTCCCTTTGA	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
CATTCTAAGTCGTTAC	alt_5221_RC	2	1	1	0	3	0	1	0	3	0
CAAGGGTTTGTTTGTG	alt_5221_RC	37	55	44	35	56	39	55	34	54	27
GTAACAACCGATCAAA	alt_5221_RC	9	25	15	23	26	5	21	17	29	7
ATAAGCTGCCGCGCTA	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
CAACTTGTCATCTGAC	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTTTTCCCGTCT	alt_5221_RC	42	84	61	47	87	52	87	60	106	38
TACTTCGACATCTCAC	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
TAATCACCCTGATTAC	alt_5221_RC	22	54	44	36	55	37	67	20	59	30
AATGATTACATGAAGG	alt_5221_RC	12	11	18	8	21	10	20	12	11	12
GGGGTCCTATACTCGC	alt_5221_RC	44	30	44	25	50	31	45	32	44	19
GATTCGATAACCATAG	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
ACCCGATAGACATCTA	alt_5221_RC	42	78	69	62	91	51	64	51	91	39
TCTTTTTTCCCGTCTA	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
TAATACCTGCTCCGGT	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
GTCTTTGAATGCCCCT	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
AGCATAATTGGATCAG	alt_5221_RC	116	149	112	124	122	123	162	106	153	78
GTATGTTTTACTCAAA	alt_5221_RC	28	25	29	28	39	41	60	19	38	24
CCCCGCAGTAATCGAA	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
TTATATGACCAATGCA	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
AAGGGTTATAGCAACT	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
CAGTGAGTTGTTGACT	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
CTCAAGGTGCAAATAA	alt_5221_RC	3	6	2	3	9	5	9	2	12	0
CTTGCGGTGCGCAATT	alt_5221_RC	0	0	0	0	0	0	0	0	0	0
GGCTCTTTCTCCATTG	alt_5221_RC	16	5	13	9	9	8	13	9	12	11
GTCAGATCTCGTATTT	alt_5221_RC	22	33	28	16	29	16	23	21	34	20
AACGAGCTGCACTGAG	alt_5221_RC	125	158	166	133	166	145	171	119	166	131
CACAACTATTATTTGG	alt_5221_RC	3	16	13	7	7	9	8	4	8	8
TGCTGGTGATGTTATT	alt_5221_RC	54	91	71	38	91	47	94	45	74	55
TCCTCGTGCCTTGTTG	alt_5221_RC	8	26	12	4	28	11	39	6	28	8
CGGCATTAGTCATCTC	alt_1150_RC	37	10	33	20	7	32	7	36	14	24
AGGGCATCTCCGCGAC	alt_1150_RC	109	30	139	119	36	107	37	101	44	98
GCTGAGCTCAGATTTA	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TTGCGCTCAGACTCAC	alt_1150_RC	143	47	148	121	60	124	46	83	70	115
ACGGGGGTGCTCGCGC	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
ACGAAAAGTTTATTCC	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TACTGTTCCCCTTCCT	alt_1150_RC	8	3	6	4	3	1	5	12	4	2
CTACTTTTTTTCGTTC	alt_1150_RC	95	26	99	67	34	92	38	73	23	55
GTGCGATCGCCCCCTC	alt_1150_RC	220	68	218	217	81	216	81	217	103	194
TCCTCGGTTCATTATC	alt_1150_RC	210	82	248	179	91	191	45	182	66	182
ATGATTATGAGTTTTT	alt_1150_RC	21	21	25	33	19	27	21	28	14	12
GGGCTAAGAGTTCTTT	alt_1150_RC	60	15	61	53	27	60	20	32	22	41
GGGTTTGCGCTTTGCT	alt_1150_RC	266	101	382	277	114	287	91	299	114	264
TCCATATTCTTTAACA	alt_1150_RC	72	20	105	76	31	87	31	75	30	66
GCACCACTCCTCGTCC	alt_1150_RC	137	185	175	153	162	137	190	146	177	131
TATCACGGGTGACGTG	alt_1150_RC	105	33	133	88	32	96	49	62	43	83
TGTATTGTTGGAGAGT	alt_1150_RC	82	26	71	64	23	57	17	80	31	54
TTAAGCCCATTTTTCT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TCTAGCTGTACATGGC	alt_1150_RC	74	25	126	91	22	66	28	88	27	87
GGACGCTGGGTTAGTG	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TCGAGGGCTAACCCAT	alt_1150_RC	161	64	204	161	77	140	56	132	65	157
TGTGCAGTTTTCGATG	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
GGCTAATTCAGTACTA	alt_1150_RC	20	7	15	13	7	13	6	16	6	8
AGGGTTTATTTGGTCA	alt_1150_RC	229	80	293	233	88	223	83	213	82	216
GTGGGTGTAACGGGCA	alt_1150_RC	61	26	84	55	22	55	23	56	10	45
ATGGTTCTTGACAGCA	alt_1150_RC	195	97	304	206	76	211	83	218	108	184
TGGTGTTCCACTGTAC	alt_1150_RC	155	54	202	169	70	140	72	160	69	171
GGGCAAACTTCGTTCA	alt_1150_RC	47	9	51	27	25	45	12	37	7	31
GGTGTTGTAGCTGAGC	alt_1150_RC	76	29	88	97	27	56	29	66	30	70
TTTTTGTCTTTGTTTA	alt_1150_RC	26	7	27	22	6	30	8	23	10	18
TATAATTCTGTAGGTT	alt_1150_RC	254	92	308	250	91	236	122	227	117	228
CGGTATGAAGTATACC	alt_1150_RC	389	140	448	409	175	366	159	380	168	355
GCCGGTCCCGCTCATA	alt_1150_RC	51	25	66	75	16	52	17	57	17	44
CGTGCCGTGTTTTCAT	alt_1150_RC	286	111	417	331	122	320	118	303	130	282
AGATATTTTACAGGCT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TACTGTCTCTGTTCTG	alt_1150_RC	26	9	46	37	9	28	18	37	17	33
TTGGCTTTGTTTTCTC	alt_1150_RC	220	61	225	200	56	185	48	203	44	183
GAAGGATTTCTTCTTG	alt_1150_RC	176	66	230	174	58	192	55	192	68	184
AATATCTAGAACAGTT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGGTCCCGCCGG	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
GCCTTCGGGTGACTCT	alt_1150_RC	211	82	303	242	99	193	92	218	90	216
CAGTGATCGATTGGTC	alt_1150_RC	69	19	93	57	34	67	31	78	38	55
CTTCCTCGTAGTCCGG	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TTTCACGAAGGTTGGA	alt_1150_RC	204	61	250	230	68	216	75	178	79	183
GGCTACTCACAGACAG	alt_1150_RC	13	3	19	21	7	19	15	24	7	17
GCGCCTTCGTCAATTG	alt_1150_RC	50	28	60	48	13	66	31	58	24	51
GATCCTCGCCGCTTGT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
CCTTAGCTTTTGAGGA	alt_1150_RC	10	12	17	24	7	14	2	7	10	12
TAGTATGATTGGCTAG	alt_1150_RC	19	12	27	15	9	15	15	22	9	20
CCAGGAGTGCGTGACA	alt_1150_RC	276	98	326	278	110	285	87	218	98	230
CATAATCCGACATGCG	alt_1150_RC	29	15	43	47	15	35	15	43	17	33
ATCGTTGGAGCGCTCC	alt_1150_RC	61	19	75	54	23	49	16	57	20	59
ACTGAGTCTGGTTCCC	alt_1150_RC	33	13	48	49	13	42	17	39	16	34
TTATAATCCATCTATG	alt_1150_RC	18	8	40	34	20	25	16	26	12	25
GCGGTTGGTCTCGTGA	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
ACAGTAATTCGCGTTG	alt_1150_RC	6	2	9	6	6	2	1	8	1	5
AGTTGGTCACCTTGAG	alt_1150_RC	291	117	378	309	107	279	139	298	121	280
TTGTACTAGATGTCTG	alt_1150_RC	70	21	57	45	24	52	24	46	24	47
CATTCGGATGTTTTTA	alt_1150_RC	541	243	667	545	203	593	243	589	247	495
AGTCTCAGCGATATGC	alt_1150_RC	69	10	60	51	13	35	17	55	34	40
CCCTGTTATTACGAGC	alt_1150_RC	352	129	439	330	109	373	125	311	153	336
CAACATGGGTCTCTGT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TTGACGTGTGAGCTTC	alt_1150_RC	68	30	66	50	25	60	26	63	17	43
TGTGGCCACGTGACCA	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TTATTGGCTTATAGTG	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TTTTACCGCGGTGCGG	alt_1150_RC	151	34	168	130	56	127	52	118	59	113
TTGCGACTACACTACC	alt_1150_RC	472	196	610	543	189	449	214	454	195	460
TATCGCGTTATCCGTT	alt_1150_RC	590	262	761	669	271	588	283	626	272	584
GGATCGCTTTTGGTAG	alt_1150_RC	681	260	811	679	238	623	271	642	264	597
CATACGATGAAAGGGC	alt_1150_RC	24	12	28	46	22	32	12	43	18	31
GTTAAGAGAGCTACTT	alt_1150_RC	141	29	144	121	40	161	68	106	51	134
GAGGGACATGATCCAA	alt_1150_RC	106	46	103	111	55	100	54	97	42	79
ATTCAGTAAGTAAGCG	alt_1150_RC	94	41	80	61	26	68	38	75	21	65
GTTCTTTCTCTAGGGA	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
ACCGTGAATTCCATCT	alt_1150_RC	192	48	210	184	63	149	49	155	59	123
CCGAATTGCGTTCCTC	alt_1150_RC	12	3	4	4	0	3	1	2	1	4
TGTTCAGCGCTTTTAT	alt_1150_RC	59	40	80	79	26	56	32	67	23	66
GGAAAAAGTCTTTCAT	alt_1150_RC	77	18	68	40	24	56	20	52	24	44
CTATCCATACAGTACG	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
GTTGGTCATGCAAGGC	alt_1150_RC	28	13	32	44	14	30	11	18	4	33
CGGACGGCAATCTTGT	alt_1150_RC	142	47	141	114	41	117	57	121	57	107
GGCTTAGTAATCCTTC	alt_1150_RC	48	15	37	33	18	36	9	51	21	37
CTCTTTTGGTGCACAA	alt_1150_RC	99	43	101	86	38	93	39	72	41	90
GAATTCCTCGTATTTG	alt_1150_RC	154	39	171	142	49	125	55	150	49	120
TGCGTCTAGAACAGTT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTTGTTACTTGA	alt_1150_RC	222	68	259	203	87	212	79	185	80	192
GTTCCAACCTTCAAGT	alt_1150_RC	198	63	237	152	73	143	62	179	47	177
TTATAGCCTGATGCAC	alt_1150_RC	33	15	47	33	15	45	13	23	9	49
CGGTGTGCACGATTGC	alt_1150_RC	174	53	198	169	60	163	68	154	58	141
CGGGCGATCGACAGCT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
GCCGATCCACGTGTTT	alt_1150_RC	14	29	29	13	39	34	28	28	33	22
CCGTTGTTATTGCGAA	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TACTTAACTCACCGTT	alt_1150_RC	30	20	31	22	11	26	13	20	14	31
CTACCTTGAATTTCGC	alt_1150_RC	48	15	59	23	15	38	12	34	17	28
AATTTGTTTCCGGGTG	alt_1150_RC	247	85	371	318	100	282	108	309	119	256
AATATGCGATGCGTGT	alt_1150_RC	34	11	38	39	16	30	17	24	14	21
TCAGTCGCGTTTATCT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
CCGCTGGAGAATTGGG	ref_1150_RC	166	80	222	179	92	141	79	163	92	168
TCTACTGTGTCTAGAA	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TAAATCTAGAGTGCGT	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
CTATTGACAAATCCGT	alt_1150_RC	117	40	134	118	43	108	42	131	33	123
GTTTCCTCCGGGACAA	alt_1150_RC	8	1	9	3	2	6	2	1	0	1
TATAACATGTAGTTGC	alt_1150_RC	132	41	158	117	56	101	50	117	63	104
CATCGCGTGCTGTAAG	alt_1150_RC	184	90	251	210	66	199	94	192	94	191
CTTTTTGTATTGTAAC	alt_1150_RC	0	0	0	0	0	0	0	0	0	0
TATTGAGTTAGTAGTC	alt_1150_RC	57	35	59	44	20	43	24	47	19	33
GATTTGACGCGCATAA	alt_1150_RC	30	7	47	22	9	25	15	18	19	17
CACGTGTCCCGCCGGT	alt_1150_RC	89	33	111	92	32	79	36	85	30	88
GTAACTTGAGTCTGTC	alt_1150_RC	100	32	132	103	35	96	42	95	53	86
CAGGAATGGACTGGCA	alt_1150_RC	159	61	207	185	60	164	71	160	73	172
CTGTATAGGTAACGTT	alt_1150_RC	36	15	43	33	5	26	10	36	13	32
GCCGGTCTCTCGTGAC	alt_1150_RC	79	83	74	73	79	75	79	61	76	57
AAACAATCAACGAGAG	alt_1150_RC	144	41	173	161	42	137	39	124	46	141
GCATGTTGGCTAGAAA	alt_1150_RC	50	20	65	48	21	47	23	35	17	43
GATACAAGTTCTTAGA	alt_1150_RC	52	24	65	59	13	50	30	50	26	50
CGCCAGAAAGCCTCTG	alt_1150_RC	123	32	149	97	29	115	33	117	40	105
ATATTTCCTATTACGC	ref_5878_new	12	19	23	19	20	18	15	11	11	17
ATATTCTCCCAAGAGC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GTATGCTGTTTGCGGG	ref_5878_new	4	13	14	1	13	6	14	10	12	4
TAATGTCGGACATGCG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GACCTCAACCTCATCG	ref_5878_new	17	24	16	26	18	25	22	19	32	21
TCGCTGAGATGCGACT	ref_5878_new	14	12	17	13	11	16	10	20	18	11
TACGTTCACGAGGTCT	ref_5878_new	26	29	23	30	26	24	24	20	32	19
CCGTTCTATGCGTGGT	ref_5878_new	0	2	2	2	9	3	5	2	5	3
CCTATCGATTAAGATT	ref_5878_new	12	19	22	18	24	11	16	13	22	15
TCAAACTTTCTACTCT	ref_5878_new	21	20	18	17	15	12	20	15	15	14
TGCTCACGTTGATATT	ref_5878_new	31	27	26	26	33	24	30	29	33	20
TCTAAACACCGTTTCC	alt_5878_new	120	138	128	111	159	105	155	118	133	99
AGGGTTCGGAAAGGCG	ref_5878_new	10	15	19	12	17	17	11	9	21	15
TCATAGAGGTGGCCTT	ref_5878_new	17	26	30	14	12	15	23	22	26	11
TCGTCAAGTACCCAGT	ref_5878_new	7	4	4	4	5	2	0	2	3	3
TCGCATGCATCAATTC	ref_5878_new	16	32	39	23	27	21	33	20	32	23
AAGAGTAGAAACCTGT	ref_5878_new	20	23	24	15	21	18	24	19	11	16
TTCTATGTAGCGTCGC	ref_5878_new	57	100	85	80	81	81	90	65	92	59
AGCGAACAGTTGACAC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TAGGAATCGGGGGTTG	ref_5878_new	7	6	8	10	8	2	15	6	4	3
GGCGATTGGGCTAATT	ref_5878_new	8	15	10	17	9	11	17	16	13	7
TGATGAGTTAACGTCG	ref_5878_new	41	35	42	32	42	25	41	24	36	28
GATCGATTTACACTGA	ref_5878_new	14	22	29	14	15	20	28	6	32	20
AAGTGGTCTCCGGGTT	ref_5878_new	44	63	81	50	76	57	93	69	93	46
GCAGGCCTGTCGTATA	ref_5878_new	2	0	2	0	2	2	0	2	4	4
AGTGAGCTTAGTTTAC	ref_5878_new	3	7	11	6	9	7	12	3	4	8
TTATAGATTATTTGAT	ref_5878_new	21	34	12	20	31	15	21	17	23	18
CCTAGGATTTCTAATA	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GTCCAAGTAGTTTTTG	ref_5878_new	3	2	5	14	11	9	9	6	13	7
CTGACGTTCACTTCCT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GCTGACGTCCGTTACC	ref_5878_new	230	251	251	228	250	197	271	190	255	183
TGATCCAAGATTCAAT	ref_5878_new	79	88	83	67	78	64	99	39	115	48
TGTGACTGCTTGGGGC	ref_5878_new	7	17	16	3	11	12	7	10	16	18
TAATGTAAGTTCTGGA	ref_5878_new	6	6	4	7	11	5	4	7	9	2
GGTCTACGCTAAGGAA	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CTGGTACGTGATTTAT	ref_5878_new	77	24	84	89	34	74	32	71	22	69
GGGGAACTTCTTTTGT	ref_5878_new	164	115	172	129	125	131	145	128	126	137
TAAGATAGACCGTTAT	ref_5878_new	56	63	82	45	78	61	83	50	92	50
GCTAGATTTATGCGCC	ref_5878_new	3	12	14	10	9	10	7	7	11	9
CGGGGCAATAGAGTCG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TCAGGTCCGTATGTTT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TGTCACTCAGCTCGTT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GCGGCCAGCTTATTGT	ref_5878_new	12	15	13	16	10	6	11	11	25	8
GCGATATCCCCGCTTC	ref_5878_new	26	42	25	29	42	28	30	24	29	22
ATCAATTGTTCTGGTA	ref_5878_new	96	154	136	111	170	117	172	91	151	126
TAGAGACGATGTGTTA	ref_5878_new	56	65	77	65	82	42	74	58	86	50
TCGCCTGCTTACGTGT	ref_5878_new	28	72	40	31	37	44	44	25	49	38
TGGGCAAAGCACTCCT	ref_5878_new	13	35	26	13	17	18	19	17	28	18
ACACCGCCAGGGCAAT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
ACAGGCCAGTTTTTTT	ref_5878_new	36	45	47	36	46	36	37	25	53	31
GTTCGGTCTAGAACAG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GATAGAGAGATGGATG	ref_5878_new	126	132	154	125	139	116	170	95	139	94
AGTCACCGGCAAGTAG	ref_5878_new	8	39	15	14	46	14	37	7	40	11
CGCTCAGTTTCATGCG	ref_5878_new	10	27	14	12	13	7	24	10	23	14
TACTTACCAGCATATC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GATTGTTTAGCTGCCA	ref_5878_new	41	25	25	35	28	23	34	36	29	31
TGTAGACGTCCTGACA	ref_5878_new	4	5	9	9	11	10	10	2	5	6
GCCTTCTCTAAGGTCA	alt_5878_new	78	96	96	84	104	77	91	66	104	69
ACGAGACCCTCGACTG	ref_5878_new	3	0	1	0	0	3	5	0	4	0
AAGTGTCGGGCAAAAA	ref_5878_new	4	3	4	4	5	7	5	7	6	2
TCGTCTGGGTTTGACG	ref_5878_new	238	249	291	198	229	230	290	184	286	205
GCCCGTTTACTTCTTA	ref_5878_new	69	53	73	71	91	51	58	43	95	60
GAAGGGTCCTTTGCTC	ref_5878_new	18	19	18	23	17	7	20	14	20	18
TTCTATTTTTTGAGGT	ref_5878_new	48	55	59	45	38	34	44	46	53	35
GCGAAAATCAAGGAAG	ref_5878_new	32	38	37	50	56	38	49	27	40	29
GGAGCCCCTTCCCACT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CTGCACGCTCCAGATC	ref_5878_new	0	3	1	2	0	1	3	0	1	0
TGCCATTGCACCTTTA	ref_5878_new	17	22	30	26	22	13	24	24	37	23
AGCACGTCTATGTTTG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CGCGTCGCTACATCTC	ref_5878_new	34	26	29	28	25	27	36	13	42	14
CTATTGCTAGGGTCTT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TTTCGCTCTCTCCGAG	ref_5878_new	9	8	9	17	23	13	18	9	16	16
TTTAACTTTCTACTAT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TTCTTTCCCTGTCATC	ref_5878_new	4	3	2	1	5	0	6	1	8	3
GACGCTCCGCGTACAC	ref_5878_new	12	21	17	9	11	13	22	17	26	12
TTTACATTTCTGTCAC	ref_5878_new	3	8	2	1	7	2	5	2	5	5
CCTCTTCCTTGGGGTT	ref_5878_new	21	29	28	19	43	22	42	11	38	15
TTAACTTATTCCAAGA	ref_5878_new	18	28	22	18	18	13	15	9	22	18
ACTCTCACTGCGGCGA	ref_5878_new	20	20	27	23	19	13	18	13	34	15
TGACCGTGAGAAGGAG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
AGATCATCTAGGTATC	ref_5878_new	27	40	35	36	37	20	57	33	40	34
TGATCAAATGTTTGGT	ref_5878_new	10	19	23	21	20	13	17	16	18	18
AACCATGCGTCCAATT	ref_5878_new	10	23	21	19	28	11	41	19	27	21
TTTAATAGAATAGCAC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CTAAATCGCACAGCCG	ref_5878_new	12	14	23	12	12	14	15	7	12	10
GGTGTTTTCTCCCGTT	ref_5878_new	34	42	61	53	53	42	39	43	43	40
CAGGGATCCTTTCCTC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CAGGCAGTGCGAGTCA	ref_5878_new	0	0	0	0	0	0	0	0	0	0
AGCAGGCATCAACCCC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CACTTGTCGCAGGACT	ref_5878_new	79	77	91	77	98	92	93	83	77	69
CGCTAGCTACCAGGAC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CGTCAAGTTCTGTTCA	ref_5878_new	64	92	90	83	103	68	83	81	89	51
CCGATGGTCCCAACTT	ref_5878_new	6	6	0	3	3	1	7	1	6	0
TGATCCAATGGGTATA	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GGGATGAATCTTCGGC	ref_5878_new	9	4	14	3	7	5	5	9	9	9
CAAAGGGGCCTGCTGC	ref_5878_new	42	29	44	43	53	28	59	34	41	34
GGGACAGTCTAAGGCA	ref_5878_new	21	26	40	26	40	20	22	18	42	22
TGCTTACGGCGAACCG	ref_5878_new	51	67	65	46	60	33	53	41	62	31
AGTTGGCCATGATTCC	ref_5878_new	34	28	43	36	37	35	41	26	35	33
CCACCCTGACCGGGCT	ref_5878_new	3	13	7	5	7	11	10	11	10	7
CCTGGTCCAGTTATCA	ref_5878_new	1	2	2	2	1	2	3	3	3	3
TTCTCATTTCCCCATC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CCAGCACTTCAAGAAT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CTTACTCCATTGCGTT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
AACAAGGTTCCTTCGG	ref_5878_new	18	24	24	17	23	21	34	15	27	22
CCCACGCTCTCATGTG	ref_5878_new	25	30	33	24	56	32	41	40	35	24
ATGATGCCGGTCCTTA	ref_5878_new	45	47	53	32	52	43	46	36	50	38
TGCTGATGGAATACGC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TTCGTTTTCGCCAATA	ref_5878_new	10	11	15	14	14	9	15	7	7	5
TATAAGTCTTCACGGC	ref_5878_new	8	2	2	7	3	2	4	9	14	5
GAATCCTTGTTGAACC	ref_5878_new	11	12	16	15	19	4	10	17	14	9
GAGCCTCTCTATCTGG	ref_5878_new	23	53	44	30	39	33	36	15	38	26
CAGTGTTAAAACCTCG	ref_5878_new	48	49	43	47	52	41	40	32	45	32
AGCCGCTCGAATCTAG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
CTCCACTTCTATTCTC	ref_5878_new	1	2	3	1	2	0	2	3	2	0
ATGTCGATCCGTTTGT	ref_5878_new	2	5	3	4	5	5	11	2	7	3
ACTTGGTGAGGGTCTC	ref_5878_new	15	21	20	23	16	16	30	23	27	18
ATAACATCTTGATGTG	ref_5878_new	0	2	0	0	1	0	0	0	0	1
GTGTTAGTTTTAATTT	ref_5878_new	20	37	22	36	35	31	32	30	38	27
ATCAGCTCGGTAATCG	ref_5878_new	138	158	160	161	160	122	187	123	153	116
CTAAACAAATTGTTTG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
ACTTTCAGACGCCAGT	ref_5878_new	10	20	21	14	17	17	16	6	18	7
GCATCGGATCAGCATT	ref_5878_new	16	33	30	29	29	19	24	25	25	18
TCTCCGGATGTATCTT	ref_5878_new	11	9	20	7	15	15	15	10	26	17
ATGCTAGGATCTCCTC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TATACTTTTATGCGAA	ref_5878_new	9	12	7	9	15	7	7	6	7	12
GGTTACCTGTAGTGTC	ref_5878_new	7	13	14	11	22	12	9	7	10	9
AGGTGGTTGGGCCTCT	ref_5878_new	62	65	68	63	53	47	67	51	55	54
TCCCTACTTTGGACTC	ref_5878_new	68	64	65	43	78	74	82	63	70	59
TATTTGTGTTTATTTT	ref_5878_new	23	32	37	26	31	36	31	19	29	35
ACAGTTGCTGTAGATT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
AACGGTATCCACATCG	ref_5878_new	261	326	328	284	356	237	376	243	377	274
CGCTCTGTGTTATTTC	ref_5878_new	60	108	70	64	92	73	95	47	95	51
CAATGTGGCTAGCCGC	ref_5878_new	14	30	16	23	24	16	17	18	21	11
GATCATTTTATGGTAC	ref_5878_new	62	74	69	59	89	55	87	57	79	58
CTTCACTTCCTGTCCT	alt_5878_new	5	7	8	5	6	6	10	6	11	8
ACTGCTGTCATTTCGG	ref_5878_new	19	22	23	17	23	17	25	10	21	13
ATAGATAGTGTCCATC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
AACCGAATTGGGGTTC	ref_5878_new	11	7	9	10	11	9	13	8	11	7
TGTGCTGCCAATGTGA	ref_5878_new	31	34	35	34	27	22	28	27	27	12
CCTTGCACTTGCCAGT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
AGTTCTTTATATTTTC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TAATGTGAAGTTGTCT	ref_5878_new	24	17	23	32	15	8	23	8	29	14
ACTACCAGATCCGTTC	ref_5878_new	4	6	4	3	1	3	5	2	3	3
CCTACGCTTTGTCTAC	ref_5878_new	9	12	10	16	21	10	21	10	16	8
ATAGTAGGCAACAATG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TATACAAAAATTATCG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GGCGAGCTTTTCAACA	ref_5878_new	74	73	86	70	86	80	76	69	94	61
ATGATCTGGTCGACCT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GAATGACGGGACACGC	ref_5878_new	41	50	47	40	45	41	48	48	46	42
ACGATCCCACCTCAAC	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GTTCGAAGGTACCGAG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
TTGCAGTTTGAATGTT	ref_5878_new	60	83	90	66	94	58	87	75	101	77
GCTATCGCCCGTGCTA	ref_5878_new	39	56	52	49	56	28	80	34	63	27
GATCAGGGGCCGCCGG	ref_5878_new	0	0	0	0	0	0	0	0	0	0
AACTCTGTGGTCTACA	ref_5878_new	41	31	38	28	27	28	47	39	33	20
AATAGCATTAACGATC	ref_5878_new	43	41	51	37	53	36	49	34	56	19
AAGTCAGTTAAATACA	ref_5878_new	22	41	30	22	31	26	30	27	31	18
AGCCATTGGTTAAAGG	ref_5878_new	4	5	11	4	8	4	7	9	9	6
TCCACTCAGAGTCCAC	ref_5878_new	30	62	38	25	48	27	62	28	45	38
CAAAATGTCTCATTAT	ref_5878_new	5	11	9	10	2	5	9	6	6	5
CTACTCGGGCGTCACC	ref_5878_new	18	19	36	17	27	17	23	26	37	25
CTCGGATGTATACAGT	ref_5878_new	14	13	14	18	17	18	16	20	14	12
CCCTGCTCTATCTCTT	ref_5878_new	5	11	5	5	9	9	14	6	18	5
TAAGGGTTATGCGCGA	ref_5878_new	0	0	0	0	0	0	0	0	0	0
ATTACTTACGAAAACT	ref_5878_new	7	14	19	10	17	10	22	9	23	5
AGACACCGCCCTTAGG	ref_5878_new	15	9	12	24	14	10	26	20	24	16
TTTGCGTTATCTTATA	ref_5878_new	11	16	18	7	17	4	11	10	15	8
CTGGAGTGCACGTGGT	ref_5878_new	32	34	50	44	47	46	34	35	46	36
ATACCCGTCCACATTT	ref_5878_new	13	13	17	15	26	13	17	6	21	7
TCCGGAGAAGACTCTG	ref_5878_new	61	70	64	43	71	42	59	41	64	39
CCGCTGTGTTGGTCGC	ref_5878_new	84	111	86	70	97	68	96	75	120	68
GCAAATAAAGGTACTT	ref_5878_new	0	0	0	0	0	0	0	0	0	0
GCTTGCATATATGGAC	ref_5878_new	108	174	168	148	182	126	193	147	178	131
AACCATTATCGCGCGA	alt_5878_new	77	62	84	61	84	66	90	58	75	62
GCTAATCTGTGTAACG	ref_3643_upstream	52	73	60	42	42	31	48	35	56	36
CATTGTGCCGCTCAAA	ref_3643_upstream	21	20	15	16	20	15	35	16	29	11
CGGATTATATTTGAAG	ref_3643_upstream	31	69	31	28	98	19	69	18	75	24
GTCTTCCAGTAAATCT	ref_3643_upstream	30	15	25	16	18	23	26	22	29	13
GGTCCCCGCCGGGAAA	ref_3643_upstream	45	82	61	52	87	55	95	51	104	38
ATGGCCAGTCGGTTCG	ref_3643_upstream	12	16	9	8	11	11	8	7	16	7
CCCTCACCACATCGTG	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGTTACCTCAGCA	ref_3643_upstream	63	130	75	87	105	56	127	81	110	55
TTGGGAAGTGACTCCA	ref_3643_upstream	209	230	275	222	286	211	271	224	259	224
GCTCCATCATCTAGAG	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTTGGTCTAAGTT	ref_3643_upstream	19	28	32	30	47	17	35	27	40	17
CTTGGTCAACCTTTCA	alt_3643_upstream	23	30	13	24	32	16	50	22	57	28
TATTCTCCCTCTCGTT	ref_3643_upstream	32	34	36	27	38	32	26	20	47	13
TACTCATGTGGCGAGA	ref_3643_upstream	66	109	103	82	69	65	104	72	106	61
CTTCTCATAATCAGTC	ref_3643_upstream	23	26	53	26	33	29	30	36	46	20
AACCTTGAGATTAAGT	ref_3643_upstream	2	9	5	6	4	4	7	1	7	3
CCGCCCTTCAGCGCTA	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
TATGCCACCGCTCTGT	ref_3643_upstream	39	41	59	50	56	48	62	40	57	49
AACTCGGGTGACGTTG	ref_3643_upstream	11	10	6	4	8	3	2	12	7	7
GTTCTCTGGATAATGT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGAGCCGCTACCT	ref_3643_upstream	87	90	88	96	97	85	99	77	96	77
GGTCGCGAGTGGTACA	ref_3643_upstream	4	10	11	8	6	5	6	12	5	7
CTTTGGCGGTACAGTG	ref_3643_upstream	4	1	2	6	5	1	5	1	2	1
CTGCCGCTTGGATTGG	ref_3643_upstream	6	8	8	8	6	10	14	9	9	4
AGAAACTACCGCGCAA	ref_3643_upstream	22	7	28	8	16	24	18	14	26	14
TTACGGTGCGCACAGT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGATTCCTTGTCT	ref_3643_upstream	124	103	132	91	138	105	161	104	175	109
ACTTTGTGTTGATGGC	ref_3643_upstream	102	151	168	142	145	132	153	105	156	116
CTCGGTGCTTACCTTT	ref_3643_upstream	47	146	63	67	152	62	111	48	147	68
CCACCGTTCTAGTCTT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGCCAGTTATGTT	ref_3643_upstream	11	19	15	19	22	11	15	16	19	21
TTGTCTGTGGAATCCT	ref_3643_upstream	8	7	5	9	17	4	11	12	11	10
GTTCATACGTCACGTA	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTCCCGGGTTCCC	ref_3643_upstream	9	14	14	9	15	13	13	10	17	18
TTGGATAAGCGTTAAA	ref_3643_upstream	44	58	50	26	47	35	56	37	50	30
TTGCTTCCGACCGAGC	ref_3643_upstream	18	36	20	16	18	12	25	25	26	20
CCTTATTGATGCAGAT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
CATCTGATACTCTCGT	ref_3643_upstream	8	22	23	2	17	12	11	13	11	7
ATGCCCTGACCCTAGC	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
CACCAGAGACCCACGT	ref_3643_upstream	4	7	8	3	12	6	6	9	5	5
CTGTCCAGATGTGAAA	ref_3643_upstream	80	71	63	80	73	64	83	52	114	58
ATTTACTCAAACTCAT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
AGAGCATGCCAATCCT	ref_3643_upstream	12	18	27	20	29	14	21	15	16	12
CTTTACCAGGCTTCGA	ref_3643_upstream	10	18	21	20	26	20	18	18	26	17
GCCGTGTAGGAACGGC	ref_3643_upstream	72	82	85	83	63	67	88	81	72	71
AATACACGTGGAGGGG	ref_3643_upstream	1	0	7	4	4	4	4	1	3	2
TCTTAAGGGTGGGGAT	ref_3643_upstream	22	29	23	17	27	18	33	27	31	24
TCTAGCTTCTCCGTTG	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
GCGATCCTTCGGGTAG	ref_3643_upstream	10	19	28	20	25	16	14	16	25	24
TTCCAAGGCCTTGCAT	ref_3643_upstream	3	1	4	6	4	5	5	4	6	2
GTGGTTTAGCACCATG	ref_3643_upstream	0	0	3	3	1	3	3	0	3	2
CTACTTCGTTGTGGTC	ref_3643_upstream	35	45	29	34	57	25	32	21	42	31
CATAGACAACGCTGGT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTCCTTGGTTTT	ref_3643_upstream	19	18	14	11	26	18	11	15	17	15
TGAGGCGCTCCTGAAG	ref_3643_upstream	11	11	17	13	15	5	14	6	14	5
CCAGCAGTACAGTCAT	ref_3643_upstream	25	66	47	27	45	16	56	36	56	30
TAAGACCATATTTGAA	ref_3643_upstream	41	48	45	36	45	35	67	23	41	38
TTACTTCCGGGATCTG	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
AATGCATCCTCTGAGC	ref_3643_upstream	37	33	45	27	24	25	22	20	37	18
TAGGCTTGATAAGCCC	ref_3643_upstream	44	57	64	46	48	42	54	33	60	21
GTCTCGGCCCGGGGTA	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTACAGACGATCG	ref_3643_upstream	3	0	3	1	3	3	3	4	5	1
CCCCATCATCATGCGT	ref_3643_upstream	40	40	49	49	59	30	62	33	57	28
ACCCGACGGACCCACA	ref_3643_upstream	6	6	3	10	13	9	5	5	11	4
ACGTTCGTCACTTTGT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTCGTTCAAGACT	ref_3643_upstream	11	24	23	17	18	11	14	7	23	17
TGTACATCTCCAGCTT	ref_3643_upstream	36	47	34	25	66	22	72	23	78	22
CCATCTGATTCTTGTG	ref_3643_upstream	102	125	111	144	136	92	154	120	153	108
ATGTCGAATAGGCTTG	ref_3643_upstream	26	49	52	30	41	42	32	42	64	36
ATTTCCCAAAAGATGA	ref_3643_upstream	48	52	87	49	76	56	79	53	70	37
TTATGAAACTTCTAGT	ref_3643_upstream	39	44	47	24	35	30	41	27	51	33
GCGCCCCTATCGTTAT	ref_3643_upstream	5	7	8	5	8	13	7	6	13	7
TTTCTCAATCCCGAGG	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCAGTAGTCATCG	ref_3643_upstream	2	2	4	6	3	3	5	2	2	3
TGGTATCCTTGTCGTC	ref_3643_upstream	9	5	8	6	10	8	11	5	10	8
CCTGCGGGTGTTTGGT	ref_3643_upstream	8	19	16	10	15	10	8	5	9	5
ATCAAGTACACTCTAG	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTTACGGTTTCAAGAG	ref_3643_upstream	4	6	5	6	2	4	6	5	5	9
CATTCTTTAAGGTACG	ref_3643_upstream	11	19	18	13	14	8	15	8	15	12
GACCAAGCGTCAGTTC	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCTCATAGAATAT	ref_3643_upstream	28	39	69	48	67	52	65	49	61	44
TCATACAATCCGGATT	ref_3643_upstream	6	18	13	16	6	16	12	18	7	6
GGTCCACAACCTTGGT	ref_3643_upstream	7	6	7	4	7	4	7	4	3	4
CGCTCTCCTTGAACTC	ref_3643_upstream	33	47	48	34	62	37	55	40	54	28
GACGCCCGGGACGGCG	ref_3643_upstream	20	25	23	21	23	13	24	21	19	21
AAAGTAAGACGGTTAG	ref_3643_upstream	15	27	33	20	21	12	21	24	24	17
TGTTAGTGGTTCTTTC	ref_3643_upstream	66	89	91	87	109	63	73	75	90	48
TTAGTCTACTCGAGCG	ref_3643_upstream	21	27	19	14	30	21	29	15	24	13
CCACTTACGGGTACGA	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGGTGGAGCTAGC	ref_3643_upstream	40	52	52	38	50	48	49	40	64	57
ATCATTGCACCTTCTT	ref_3643_upstream	11	13	20	22	18	20	16	16	17	9
CTCAAGGATGGTATAG	ref_3643_upstream	6	14	11	14	7	8	21	13	15	8
TTGAGAACCTATTTCT	ref_3643_upstream	28	39	25	19	32	21	37	22	35	31
TGACAGGGCTAATTTG	ref_3643_upstream	16	23	13	9	23	18	26	23	16	16
CTTGTAGATTAATTTA	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCATTTTCGATCA	ref_3643_upstream	15	22	27	23	20	21	40	15	27	7
AGGATGGCGGGTACAA	ref_3643_upstream	41	43	43	48	50	38	46	28	48	31
CAAATCGTGTTATGTC	ref_3643_upstream	3	2	0	2	2	1	2	2	4	0
TTATTGTTGGTACCCC	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
AGAATCCCCGGAATCG	ref_3643_upstream	7	7	4	4	12	10	6	5	15	0
AGTTCTGGCCCACACA	ref_3643_upstream	52	68	53	67	61	58	61	40	78	66
AATCCCTAAGTTAATC	ref_3643_upstream	9	4	2	6	7	3	7	3	5	5
GAACCATAGTCCCTTC	ref_3643_upstream	5	7	2	4	4	5	2	4	13	3
TTGTTTTTGTGCGTCA	ref_3643_upstream	49	63	44	59	66	43	38	51	59	60
ACGAGGCACTGAGGTG	ref_3643_upstream	4	4	7	4	4	5	7	14	7	5
GGCACCTGCTAAGTTT	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGATACGCGCGGT	ref_3643_upstream	59	76	96	58	85	76	83	83	80	65
AATTCATTAGGAAGGA	ref_3643_upstream	19	21	20	14	19	9	15	21	18	16
CGGCGTGGTAGGACCT	ref_3643_upstream	10	16	9	16	25	13	19	12	25	5
TGCGGTAGCTGGCTTA	ref_3643_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGTGCTGAAACTA	ref_3643_upstream	11	16	11	9	20	9	26	11	15	8
AACCTCGCGCAATCTG	ref_3643_upstream	10	21	14	19	12	15	31	9	19	16
CTGATCTGCTAACCGC	ref_3643_upstream	26	32	29	22	36	18	31	20	34	17
GCTCGTCTATACCCCT	ref_3643_upstream	14	22	16	21	18	17	25	8	37	9
GAGAGAATTCCAGAGG	alt_6076_new	1	0	0	3	0	0	1	0	0	0
AAAATTATGATTCCTT	ref_6076_new	10	9	21	17	8	6	9	12	16	12
TGGCTATCCGGTTTAC	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TAGCTTTCCCATGTCT	ref_6076_new	0	0	0	0	0	0	0	0	0	0
TTCACGTTATAAACGC	alt_6076_new	6	11	12	12	15	8	12	10	10	15
TATGTTATGTGAGCTC	ref_6076_new	99	66	116	105	74	93	100	88	94	87
TTTGCTGTAGCATTCA	ref_6076_new	325	260	423	303	263	316	293	288	271	243
ACAATCGCCTCCTCCT	ref_6076_new	0	0	0	0	0	0	0	0	0	0
GCACCCAATGAATTTT	ref_6076_new	225	205	274	232	233	236	183	232	205	223
TAGGTCTTGTTACTGC	ref_6076_new	99	91	131	89	91	92	119	103	106	88
TAGGTATAGGAGTCCA	ref_6076_new	31	23	35	34	44	35	24	31	22	26
TTTTGGGTCGAACGTT	ref_6076_new	85	53	98	74	68	78	67	81	64	66
TGGACTTTGGATTTAA	ref_6076_new	0	0	0	0	0	0	0	0	0	0
TAGAGGTGTGAATCAT	ref_6076_new	13	18	15	19	12	12	16	11	18	7
GCGCGTACAAGGGGAG	ref_6076_new	64	73	79	84	53	75	71	41	85	66
CTTTGCGTAGAACAGG	ref_6076_new	9	13	17	18	8	12	18	17	7	16
AGCTCCAACGCAAGCT	ref_6076_new	2	4	5	2	4	5	1	4	7	2
ATTCGCAAGTGTTGAG	ref_6076_new	35	27	43	32	41	33	27	31	35	36
TTGTTTATATCCGCGG	ref_6076_new	4	1	7	5	8	12	3	11	7	7
CTCCCCATCTGCATAG	ref_6076_new	3	82	11	9	79	2	83	9	92	9
GCTCAGGCCTACAGTT	ref_6076_new	7	15	8	8	4	8	13	5	5	5
TCTTAGAGGGAACTTG	ref_6076_new	0	0	0	0	0	0	0	0	0	0
TTACCCGCTGCCACTC	ref_6076_new	32	38	53	39	47	53	33	38	46	30
CAGCAAAGATACCACC	ref_6076_new	11	18	9	14	20	10	18	9	19	17
AGGCTCTATCATCACG	alt_6076_new	105	107	131	115	113	85	116	118	115	110
ATCACCGCCTTCGAAA	alt_6076_new	40	63	56	45	54	53	41	37	56	47
GCGCGCTTAATACTGG	ref_6076_new	0	0	0	0	0	0	0	0	0	0
CCAGCCGAAGTTATTT	ref_6076_new	0	0	0	0	0	0	0	0	0	0
AATTCATCCGATGGAA	ref_6076_new	32	28	45	35	20	37	27	41	27	28
ATGGTAGACGTGTGGA	ref_6076_new	108	61	117	83	81	85	118	92	93	93
TTAAGATCTTAGAGCC	ref_6076_new	49	38	35	43	35	45	34	41	42	30
TCCCTCAGGCAGAGAG	ref_6076_new	0	0	0	0	0	0	0	0	0	0
ACGTCTCGGTTACAGG	ref_6076_new	0	0	0	0	0	0	0	0	0	0
TCACCATTTCCTTGCC	ref_6076_new	33	55	52	49	49	43	47	52	47	42
GTGAGTACGGCCAAGA	ref_6076_new	52	66	80	51	53	72	60	56	72	65
TTGTTCTTTTGCACGG	alt_6076_new	173	180	195	188	183	145	198	184	193	153
TGTCTATTCGCCATAC	ref_6076_new	0	0	0	0	0	0	0	0	0	0
CATGATTCTCCCTCGT	alt_6076_new	8	78	12	8	77	10	71	6	80	5
CGCTAAGGTCTTCACA	ref_6076_new	19	18	21	22	15	19	14	21	16	10
ATAGGGAAAGACCCTT	ref_6076_new	18	12	24	14	19	18	13	23	26	15
TCGTTGCCGAGAATCA	alt_6076_new	37	63	73	59	49	47	40	46	52	40
TTACACATCAGTACCG	ref_6076_new	0	0	1	0	0	1	0	0	2	0
TCTCCTTCTTGGGCAC	ref_6076_new	3	2	0	3	0	6	2	9	0	5
GTGTATCGGAGTAAGG	ref_6076_new	5	5	7	6	3	6	9	3	5	10
TTTTCAAGCCGTTAAT	ref_6076_new	14	12	14	16	11	11	13	12	7	7
CACTATTTCCGTCCTG	ref_6076_new	0	0	0	0	0	0	0	0	0	0
CGATCTGTTGTCGTCG	ref_6076_new	55	53	76	52	58	49	58	57	68	59
GGGATGGCTAACACGC	ref_6076_new	25	24	28	37	21	22	25	29	15	21
AGCGTAAGTTCGCCAG	ref_6076_new	20	26	35	32	26	22	19	27	35	24
CATCACAATCCTAAGG	ref_6076_new	0	1	6	4	2	2	1	2	2	3
GTATGGCTGGCTTCTG	ref_6076_new	61	66	102	59	60	65	58	61	76	41
CGACGCCACGGGAGGT	ref_6076_new	27	17	38	40	16	28	20	10	16	27
ATTGGTTGGCACCTCT	ref_6076_new	38	32	41	48	39	33	53	47	38	38
TTCCAAACCTATCCCG	ref_6076_new	19	6	20	14	13	16	11	12	11	8
CCCTGTAGTGTCCATA	ref_6076_new	38	60	30	36	77	36	59	31	74	25
CTGCCTATCCTGGTAT	ref_6076_new	18	14	26	13	23	23	16	16	19	12
ACGACGTGTGCAAATT	ref_6076_new	50	37	54	32	34	27	39	38	43	34
CTGTGGCATTAGGGTG	ref_6076_new	57	67	55	54	58	34	71	44	81	48
AAACTCCGGACCCCTT	ref_6076_new	26	26	25	31	29	29	33	40	34	24
TAGAAGGAAACGGCTC	ref_6076_new	0	0	0	0	0	0	0	0	0	0
TCCTTAAAGCGCTACA	ref_6076_new	4	9	3	4	3	5	6	6	7	8
AACCCAGGACTCCGGT	ref_6076_new	26	23	30	20	32	28	22	26	31	23
ACAGCTGCGACAACAC	ref_6076_new	14	21	20	11	8	16	16	11	14	9
GTCGCTCGGTGGATTC	ref_6076_new	164	141	196	141	130	130	127	156	150	114
TTACCTTCATGACAAT	ref_6076_new	0	0	0	0	0	0	0	0	0	0
CCTTCGGCGCCTTACT	ref_6076_new	1	1	4	2	5	1	3	0	1	3
GTGTTACTGACTCGCT	ref_6076_new	0	0	0	0	0	0	0	0	0	0
CGCTGGGCGATCTCCC	ref_6076_new	48	21	67	48	44	44	46	41	55	58
AGTTGGAGGGACGCGT	ref_6076_new	15	11	10	20	8	8	6	14	13	9
CGAAGGCATCTCCCGC	ref_6076_new	0	0	0	0	0	0	0	0	0	0
AACTTATATTACCTGA	alt_6076_new	28	38	33	38	39	21	30	20	20	32
AGTCAAGCCGTCTCTT	ref_6076_new	12	17	23	20	24	15	19	17	19	20
GGACTCTTTACGAGAG	ref_6076_new	21	16	26	18	15	14	17	22	22	14
TGGGGTTGTTTACAGT	ref_6076_new	11	23	26	19	13	9	7	14	15	14
CGGGATGCAGTTATTA	ref_6076_new	0	0	0	0	0	0	0	0	0	0
ATTATCTTGTGCATTC	ref_6076_new	0	0	0	0	0	0	0	0	0	0
GTGACTTAAATTTCGG	ref_6076_new	114	151	172	151	132	112	128	122	136	113
CTCTTATCGGCGCAAA	ref_6076_new	0	0	0	0	0	0	0	0	0	0
GTACAAGACGCCGAAG	ref_6076_new	19	3	16	13	9	8	16	7	16	14
GTGTTGCATTAAGCCG	ref_6076_new	0	0	0	0	0	0	0	0	0	0
AATTTTCCGAAATTGC	ref_6076_new	30	14	28	16	14	21	12	16	13	13
TCATCCTATGTTAGTT	ref_6076_new	35	46	39	46	32	31	35	48	28	51
TCATCTCTCTAAAAGG	ref_6076_new	43	28	36	29	31	33	21	21	31	25
GAACTGCGTTTCAAGG	ref_6076_new	31	16	28	33	18	43	29	25	23	28
TCCGTATGTGCTGCTA	ref_6076_new	24	7	24	20	9	16	13	12	11	10
CCGGATGTACCTCAAA	alt_6076_new	95	72	103	74	80	61	87	78	92	75
GATCGGGCTAGCTACT	ref_6076_new	0	0	0	0	0	0	0	0	0	0
TTCCGGTCATATTGTA	ref_6076_new	19	20	38	25	18	30	23	14	18	22
TGGTATCGGCCAAAGC	ref_6076_new	41	35	34	37	34	31	31	44	20	35
ACAGCAGCGAATGGTT	ref_6076_new	46	64	67	52	60	53	56	44	66	56
TAATAAATAATATTAA	ref_6076_new	0	0	0	0	0	0	0	0	0	0
GAGATTCCGGACTTTT	ref_6076_new	0	0	0	0	0	0	0	0	0	0
GACTGTGCTCGTCATA	ref_6076_new	8	14	6	13	15	9	9	6	10	8
GCAAGTGTACCCTGCG	ref_6076_new	43	39	44	33	26	36	36	26	47	24
AGCCGACAGGTCGGCC	ref_6076_new	9	4	9	10	7	9	7	9	2	4
AATTCTTCAGCTTTCC	ref_6076_new	0	0	0	0	0	0	0	0	0	0
GGCTTGTCCAATCTAA	ref_6076_new	13	6	17	14	6	17	5	21	2	15
TAGCGGTACGTTCCTA	ref_6076_new	19	33	30	34	23	23	20	35	16	15
TATCCATGCGTTGTGG	ref_6076_new	0	0	0	0	0	0	0	0	0	0
GGCAAGGCATTCGGAA	alt_1587_RC	70	39	77	68	44	78	51	84	51	54
TCGTGGTCAGCGGCAG	alt_1587_RC	6	4	7	6	3	7	5	2	3	5
TTAGGTCCGGGGTTGC	ref_1587_RC	69	38	79	59	42	70	44	58	60	43
GAAGTATAGCTTGACG	alt_1587_RC	0	0	0	0	0	0	0	0	0	0
TTGGGAGATTTGGGGA	alt_1587_RC	67	71	124	80	86	86	69	66	69	67
TTTCGAAAAGATCATA	alt_1587_RC	120	141	164	145	104	138	122	114	119	101
ATGCTTAGGCTCGTCC	alt_1587_RC	83	62	84	68	70	61	50	72	45	66
TTGGTAGCGGGTCTGA	alt_1587_RC	75	49	81	47	51	73	55	74	49	61
GCCTTTCAGGAGTATG	alt_1587_RC	69	49	63	57	43	65	38	68	54	75
GGGTCCCATAAGCGCG	alt_1587_RC	36	26	35	28	10	36	14	18	19	24
GGATCATATTTTTGGA	alt_1587_RC	25	14	19	23	13	24	10	19	20	15
CAGCTTACTTTGGCTA	alt_1587_RC	34	29	37	40	30	26	21	33	22	29
TCTTGATGAAACAGCA	ref_1587_RC	34	14	45	25	19	30	15	35	22	33
GTAGGCATCCTGCTTA	alt_1587_RC	14	20	16	17	25	16	28	13	40	20
CTCATCTTAGTACCCA	alt_1587_RC	4	4	4	2	4	6	3	3	4	4
GACGGCCATGTTTGCG	alt_1587_RC	2	2	3	2	4	2	1	2	3	3
GAATAAGTATAGTCGA	alt_1587_RC	48	40	51	39	31	42	31	31	28	26
CGTCTAGTGGAGATTG	alt_1587_RC	287	203	329	256	226	237	242	282	219	267
GTAGTGGCCGCGTCTC	alt_1587_RC	0	0	0	0	0	0	0	0	0	0
AGTCAGACAGTCCTGC	alt_1587_RC	0	0	0	0	0	0	0	0	0	0
TATGGCGGTTCGGGTC	alt_1587_RC	122	81	144	142	72	130	76	110	83	148
GGCGAGCGCGGAGAGA	alt_1587_RC	50	29	47	51	28	45	38	50	27	52
CTGGTATAATTCTGGG	alt_1587_RC	158	93	175	125	103	137	85	139	89	108
ATCTAGCGAGTGCTTC	alt_1587_RC	49	31	67	29	49	44	39	51	45	54
CCATGGTAGCCTCCTT	alt_1587_RC	22	23	20	21	22	22	30	27	26	17
CTCCCTCGAGTCCTGG	alt_1587_RC	7	38	17	4	43	6	48	6	53	5
CCACCGTCCCACATCA	alt_1587_RC	136	95	178	132	102	120	92	116	101	122
ACTGGTCTGAGGTGGA	alt_1587_RC	17	11	12	11	9	4	9	5	6	18
GCACTTAAGCGGAGGT	alt_1587_RC	31	23	24	26	30	25	27	27	29	29
GGAGTTGGGTAAGCCT	ref_1587_RC	18	8	21	10	12	28	11	16	21	17
TAGAATCGGCTTATTA	alt_1587_RC	20	9	23	17	15	21	12	13	18	14
TCGTTACAGTAGGCAA	alt_1587_RC	85	49	89	73	47	59	66	68	53	48
GCTCATACGCGGTATA	alt_1587_RC	3	2	1	1	1	1	0	1	0	0
TCTGAAAAGGCTATCT	alt_1587_RC	43	44	84	79	59	70	64	54	66	72
TTCTAAGGACGCCACG	alt_1587_RC	9	7	6	13	7	9	7	16	11	16
TACCATAATCAAACCT	alt_1587_RC	0	0	0	0	0	0	0	0	0	0
GTTGCTATTGGCTTGT	alt_1587_RC	0	0	0	0	0	0	0	0	0	0
AACGGTATGTCAGTAA	alt_1587_RC	4	4	5	4	2	2	1	7	0	1
CAAAATTCTAGTGATT	alt_1587_RC	61	60	73	58	55	81	70	71	74	65
ACCTCTTGCCCGTCAT	alt_1587_RC	45	41	34	44	35	52	42	46	49	38
TAACAGTCATCTGGGC	alt_1252_upstream	50	39	67	67	51	51	62	42	69	45
TATTGAGTTAACACAT	alt_1252_upstream	51	47	60	57	42	57	44	50	43	33
CGGCGCCGTTCTTTTC	alt_1252_upstream	5	9	16	8	15	7	11	6	5	7
TACAGATAATTCTATG	alt_1252_upstream	61	33	58	45	41	58	43	67	57	53
TGTTGGATGTCTCTCG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTCAGTTGTTGTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTTTGGAGTCAAC	alt_1252_upstream	21	68	32	21	66	19	81	23	78	23
GGGACTTGCTTTGCAT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGCGACTTTGTTATAC	alt_1252_upstream	30	24	41	27	23	24	27	29	41	36
CCTTCCGATGAACCAT	alt_1252_upstream	40	40	48	52	50	47	52	47	68	55
TATGTCAGCGGTATAA	alt_1252_upstream	11	9	11	14	13	16	16	13	14	14
CTTTACCAGTAAATTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGGTAATTTATTC	alt_1252_upstream	35	19	41	22	33	28	27	34	30	24
TAAGCCAAGCCCGACC	alt_1252_upstream	2	1	3	2	8	4	2	1	1	1
AGGATCTTATTCTCTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACAACTGTCTCTTGAT	alt_1252_upstream	10	8	22	6	10	8	12	11	15	8
ATCGCACCCGTTTTCT	alt_1252_upstream	46	27	54	43	31	44	27	44	33	39
AGTTCAGGGTCTCTTT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGTAGACCAACGC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGCACTAGGGCCTGCC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACTCAGTCTCTCTGCC	alt_1252_upstream	1	3	0	2	0	2	6	0	4	0
GAAGGCCGCAGAGGCC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGACAGCTGTTTCGGG	alt_1252_upstream	5	0	3	5	5	4	8	8	5	5
TCATTCTGCTTAATGC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGACGAGATATGC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCATGGTATCTTCGGC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCTATCTACCGAT	alt_1252_upstream	151	133	189	165	143	161	132	138	94	130
TGCATCTAATACGTCT	alt_1252_upstream	7	4	3	5	7	3	4	5	5	5
GTGAGTCCGGGAGCGA	alt_1252_upstream	12	20	34	16	11	29	14	17	17	12
AGTTGAGCTTGCGCTC	alt_1252_upstream	3	3	2	3	5	4	4	0	1	7
CTAAAGCGGAATTTAG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CAACGCAACGGTTATA	alt_1252_upstream	7	20	15	16	13	12	7	14	8	9
CATTGTTCAGGTCTCA	alt_1252_upstream	2	8	5	10	4	7	3	3	6	9
TTACTGCACTGACTCC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
AGTCCTGGTTCTGTGC	alt_1252_upstream	6	8	11	1	5	3	4	4	4	8
CGCGTGTATCTATTAA	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTGTCAATTAATC	alt_1252_upstream	31	18	35	38	20	15	30	33	28	33
TCGATATCAGGCCCCT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGTCCGTTATTCG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCACAGCCATTCA	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCGCTCACTAACA	alt_1252_upstream	1	0	0	2	1	2	0	1	2	1
AGGGGGATTTCTGCAC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTACTATTTTAG	alt_1252_upstream	8	4	8	6	1	9	7	5	3	6
TCTTCTATAGGCAGAG	alt_1252_upstream	3	3	18	17	4	9	2	11	5	10
CTGTAACGTGGTGATT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTGGCCTTCAGAA	alt_1252_upstream	94	75	122	75	68	77	74	85	68	74
GAAGCCCGCAGTTGGT	alt_1252_upstream	4	2	0	3	1	3	1	5	1	6
CTTCAAATGCTGTTCA	alt_1252_upstream	50	25	52	46	36	40	42	29	35	35
GTGGACTTTTTTACGA	alt_1252_upstream	101	88	124	110	85	92	91	80	98	83
TGCAGCTGCCAGGTCG	alt_1252_upstream	15	14	18	19	16	13	9	20	14	19
TGAGGCGGCGCTAGGG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGATCTAGTCACG	alt_1252_upstream	17	11	21	17	25	16	14	15	16	17
TTTTGTAGCGCCGGTT	alt_1252_upstream	79	68	102	87	74	78	59	73	59	83
CGCATTTAAAAGGCTA	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CTGCCCTTTTTTCAAG	alt_1252_upstream	29	21	34	21	32	23	23	28	27	26
AGATCGTCCTCGCAGG	alt_1252_upstream	19	13	21	16	11	17	13	19	11	8
TGTAGCACGGCATTTA	alt_1252_upstream	46	37	48	44	37	37	49	54	49	48
TCTCACGGAACTGTTG	alt_1252_upstream	87	95	109	97	80	77	86	87	113	90
GGCCGGCCGCTTATCG	alt_1252_upstream	14	16	14	24	21	16	10	17	17	10
GTTCGCAACATCAACA	alt_1252_upstream	31	34	38	28	19	34	21	35	42	27
TATAAGGTCTTGTTGT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAATGGCAGGGTC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTGAAAACCAGAC	alt_1252_upstream	4	8	16	5	12	9	7	10	5	7
AGTTTTGCGAATCTAG	alt_1252_upstream	20	17	21	10	9	22	21	10	25	21
CGCAGTTACAGGTCGT	alt_1252_upstream	31	33	42	40	43	35	36	26	43	21
TATTTGTGGGAGATGT	alt_1252_upstream	22	23	45	30	22	20	33	32	23	23
TATCTGTTCCGTTTGG	alt_1252_upstream	30	23	25	24	19	18	23	25	31	22
AATACTACATGCTCCA	alt_1252_upstream	23	10	16	15	17	16	22	12	13	10
GTATCATGCCCCCACC	alt_1252_upstream	28	26	40	29	23	29	30	31	29	37
TTGCTATCATGCGGCG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGTTATTTGGGTT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
AATCATGATGGGCCTC	alt_1252_upstream	36	41	39	43	30	39	26	26	42	23
GTATTCTCTCATAGAT	alt_1252_upstream	24	22	36	26	26	30	16	23	21	19
GAGAGAGTTGGTGCCT	alt_1252_upstream	65	46	88	61	62	54	51	58	60	50
GTGGATAGGCTTCTCG	alt_1252_upstream	14	8	17	20	7	21	7	22	22	11
CTACACCTCGTGTGTG	alt_1252_upstream	3	17	11	9	20	11	22	13	26	12
TTTCTTTGCAAGCCAT	alt_1252_upstream	11	7	19	15	4	9	6	10	9	12
GACCACAGGTGATCCC	alt_1252_upstream	12	13	13	16	16	13	13	20	18	17
TCCGCTGTGTCCGAGA	alt_1252_upstream	12	12	32	22	14	23	12	14	22	14
AACACTAGGGCGTTTT	alt_1252_upstream	16	13	21	27	12	27	11	14	14	18
AGTGATATCTAGGCCC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CAGAAGACGTGGCGAC	alt_1252_upstream	52	51	65	49	37	60	49	58	63	46
TTAGTTCAAGGGGTTG	alt_1252_upstream	20	19	31	17	22	18	15	22	15	18
GGGCCAACGCCTCGGT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CACCTTAGTGTCATCT	alt_1252_upstream	20	24	18	32	31	17	29	20	15	20
TAGAACCAAGACTATT	alt_1252_upstream	6	6	10	12	7	5	11	12	3	9
AAGGGTATGAATCTTC	alt_1252_upstream	22	12	14	19	14	10	15	21	7	17
CTATTTCGTCGATCAT	alt_1252_upstream	36	16	66	32	41	33	29	35	35	32
TTACACCGCACCTCGC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCCATGGCAACGT	alt_1252_upstream	62	51	50	53	47	46	58	61	49	45
GGGTCTCTCATTCGCT	alt_1252_upstream	29	16	24	26	12	13	13	16	10	22
AGGCTCAGATATATCA	alt_1252_upstream	45	43	34	37	42	30	33	29	43	30
CTCGTGCGCCGCTAAT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TAATCGTACCATGTGC	alt_1252_upstream	13	21	19	18	9	13	19	16	17	14
ATCTGCGGGAATGGTC	alt_1252_upstream	8	7	19	20	14	12	14	8	12	15
CAAGATACCCAAGCTA	alt_1252_upstream	3	28	5	4	19	8	22	4	29	2
TACCATGGTCGAATTC	alt_1252_upstream	26	40	47	32	31	34	35	33	51	22
CAAGACTGCCCTTACT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACGCAGGTCACATTGG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTGCACTTCTGCT	alt_1252_upstream	9	29	19	8	23	13	30	15	26	7
CCCCACGAAGTTTCTT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGTGCTGGGGGCT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GAAGAATTATCTTTGA	alt_1252_upstream	53	40	80	67	47	46	40	45	47	60
AACACTAGGCGTCTGC	alt_1252_upstream	54	33	64	64	52	67	57	49	28	52
AATGGTCCCCGATCTA	alt_1252_upstream	20	10	21	24	17	12	14	18	9	17
CCGCGTCTAGACAACC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GAACCAGTATGGGTTC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TAACCCAAGCTGTCAG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGTAATTGTGCCCGTT	alt_1252_upstream	64	57	80	58	54	58	68	55	55	56
GGCGTCCTTACGGCTG	alt_1252_upstream	31	15	38	39	18	42	23	31	25	27
CCTTTGTATAGCCCTA	alt_1252_upstream	15	14	11	9	9	16	25	18	17	15
GTCTCTCTATGATGAC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTGTGTCGGTCGA	alt_1252_upstream	1	0	0	2	1	2	1	3	1	0
GCCGGTTATAGCATGG	alt_1252_upstream	22	26	27	27	25	33	23	33	21	23
GATATCTATCGCCATG	alt_1252_upstream	131	100	156	138	112	124	78	108	110	91
TTATCCTCGGTCCGGG	alt_1252_upstream	54	41	85	69	63	61	48	51	63	55
GCTTTCCGAATATAGA	alt_1252_upstream	52	42	67	43	51	50	46	60	53	42
ATCTCTGGTTAAACAA	alt_1252_upstream	5	3	1	3	2	3	1	3	2	3
GTATCTGGAAAAGTGC	alt_1252_upstream	7	13	6	5	13	9	15	1	16	14
TCGATGGCATTTGGGA	alt_1252_upstream	4	7	14	12	11	16	8	7	14	13
AGGGAAGCGGTCTTCA	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGCATAAGGCTCT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTATGGACTGCA	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
AGATCATTTGGTAGAT	alt_1252_upstream	21	22	27	28	18	37	20	25	37	16
GATGTTTGATTGGAAT	alt_1252_upstream	54	47	53	46	41	41	50	40	43	49
TCCAGCAAACCGGTTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CGAACTGACTGAGCAC	alt_1252_upstream	12	13	20	12	6	18	18	16	16	7
TCCTGAGCTTCCCGGT	ref_3262_fdr	41	28	42	24	40	33	38	29	38	27
AGAAATCGGGCGTCCT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCAATTCAATTCTTAC	alt_1252_upstream	28	16	22	18	15	19	18	23	16	20
GTTCCCAGGTTTAACA	alt_1252_upstream	26	28	22	28	18	24	36	20	22	27
TTGATTCGGTGCTCTC	alt_1252_upstream	10	9	20	16	12	13	12	13	21	12
GTGCTGGTCGGGAACC	alt_1252_upstream	9	21	7	9	6	5	12	7	19	8
GTACTAGTTCGGCCAC	alt_1252_upstream	49	36	42	38	46	35	40	47	42	23
TATCCATAATCCCCTC	alt_1252_upstream	4	12	11	20	9	8	12	10	11	12
CGCGTGAGTCCAACGT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCCGTAGTATAGC	alt_1252_upstream	56	55	61	49	51	39	46	39	63	46
GAATTGCTCAATCCCG	alt_1252_upstream	90	78	108	69	63	71	69	63	72	65
TACGAGAGTGCCGGCC	alt_1252_upstream	3	1	3	4	1	4	3	0	2	0
TTGTCATAAAATAGGG	alt_1252_upstream	22	18	27	20	14	28	23	16	20	18
GGCTTCGCTAGTAGTC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
AATATCGAACTGCCTG	alt_1252_upstream	36	24	27	48	22	28	27	24	21	31
TTAAACGTTTGACCAG	alt_1252_upstream	23	22	39	44	29	39	25	34	27	30
AGCTGCGAGATAGTAC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCGGGGCGTAGTT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
AATAGCCGGAGCCGGT	alt_1252_upstream	4	7	3	5	0	6	3	3	2	5
CGACACCCATGAGTTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCCTTGCGATGAT	alt_1252_upstream	246	204	284	270	182	230	183	214	199	228
TTAATCAGGATGCACT	alt_1252_upstream	46	41	73	50	52	64	46	47	49	53
ATAATCTCCCAAGCAA	alt_1252_upstream	46	20	49	48	41	43	41	30	42	45
ACCTTTTCGGAGGCTC	alt_1252_upstream	6	2	7	7	7	2	6	4	4	1
ATACCTTTCTGCCCAG	alt_1252_upstream	30	25	40	32	23	22	15	26	25	37
AATTAACTTCCATGGC	alt_1252_upstream	332	238	407	322	256	337	254	297	330	310
AGAGAGAGCGCCTTCT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGGTTACGCTATC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTCTTCACATTGT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTACCCCGTTCTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TATGCCGCGAGTTTTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCTTGCGCAAGAT	alt_1252_upstream	15	18	20	17	19	19	20	12	22	14
ACTTTTGTTTAAGCCG	alt_1252_upstream	3	1	2	0	2	1	7	1	0	1
ACCCACTGGACGGTAC	alt_1252_upstream	6	6	8	4	7	13	8	10	11	9
AACCAAGTCCTAGTCA	alt_1252_upstream	69	74	85	79	59	74	84	79	79	77
TGCGTGTCAAACTAGC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTGCCGGCTCCTT	alt_1252_upstream	28	35	43	44	45	39	33	33	45	33
TGATGCATGCCATTTG	alt_1252_upstream	47	52	81	45	41	61	29	41	47	47
CAGTTTGTTGTCACAT	alt_1252_upstream	169	149	182	182	149	186	151	180	177	159
GGTAGTCCGACAGTAG	alt_1252_upstream	27	32	38	37	45	30	32	39	40	33
TCGAGTATGAGCCAAT	alt_1252_upstream	30	19	28	30	31	29	26	25	23	21
AGTTTGTTGATATTCT	alt_1252_upstream	6	10	17	9	6	7	9	7	11	8
TTAAGCGTTCTCTCCA	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGCAGAAGCATCC	alt_1252_upstream	24	3	12	4	17	10	11	14	8	11
GAGTCCCGGCACTGTA	alt_1252_upstream	15	11	11	9	13	7	8	15	8	6
ATTACTACATGGAGTG	alt_1252_upstream	146	88	179	133	118	110	121	121	108	106
TCGACCTTGTAAGGGG	alt_1252_upstream	76	59	104	69	67	88	60	56	77	72
TGAACGCCGATATCAC	alt_1252_upstream	74	62	92	88	66	78	69	88	83	59
CGTTTATCTTTTAACA	alt_1252_upstream	27	17	25	26	20	11	17	15	15	21
AGGCCAACAGCGTGCG	alt_1252_upstream	13	13	26	35	21	31	25	20	18	26
AAATGGCTGTGGGATC	alt_1252_upstream	10	7	9	3	13	8	12	5	9	8
GGCATACGCCTGATAT	alt_1252_upstream	254	199	262	225	218	200	220	213	195	182
TGTTGGCGGGGAGGTT	alt_1252_upstream	21	13	20	20	9	13	13	13	11	18
TTGCACTAAGATTACT	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCAATCCTATGTAGAT	ref_1252_upstream	169	111	167	138	130	160	143	155	126	110
TCCAGGGTGCCCGTCA	alt_1252_upstream	70	45	100	63	69	57	51	55	48	69
CAGACTTTGTATTTTT	alt_1252_upstream	83	64	92	75	65	89	53	84	68	52
GTTAGTGTAATGTGAT	alt_1252_upstream	29	47	39	40	24	42	40	30	32	25
CGGGCCGCGTACGGTA	alt_1252_upstream	18	51	24	15	55	17	59	11	68	22
GTGGACCTGGCACAGA	alt_1252_upstream	78	56	69	69	39	45	59	67	47	52
CACTTTACTGGTGTGT	alt_1252_upstream	7	14	8	12	12	3	13	13	17	9
GACATTCTTGATCATT	alt_1252_upstream	213	165	236	219	155	197	158	175	164	183
ACAGCGTCCAGTCGTT	alt_1252_upstream	1	1	0	0	2	0	2	1	1	0
TCCTTTCACAAGCGGC	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGGTGCACGGTTG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GACTCTTTCATTAATA	alt_1252_upstream	64	49	82	76	63	63	76	55	66	66
AAACTATTTTGGGCAC	alt_1252_upstream	206	168	274	210	194	198	169	194	165	181
GTGACGCTACGATGAG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGGCTACGCGGGG	alt_1252_upstream	19	14	16	9	8	9	11	16	12	15
GGCAGTCTCACACGTC	alt_1252_upstream	21	14	15	23	14	16	25	14	24	13
CGACAAGCTCGAGTAA	alt_1252_upstream	22	14	16	18	11	23	12	22	18	21
TCTCTCGTTTACGGCG	alt_1252_upstream	53	35	44	47	34	40	50	43	50	58
ACTGGACAGATAAACC	alt_1252_upstream	40	23	45	63	45	40	44	49	35	39
ATCACGCTTATATAGT	alt_1252_upstream	17	10	16	20	16	17	11	18	8	15
AGTTGTAACTCGCCCG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
GATTCGCTCCGCTCGC	alt_1252_upstream	12	11	16	10	17	17	8	7	11	7
AACCCCTCTAGAACCG	alt_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCACGCCTTCCCAGCG	alt_1252_upstream	21	13	40	18	18	16	17	23	16	14
ATGCGCTTCATTGCGC	ref_828_negative	0	4	0	0	5	0	3	1	4	4
AGGCTTTGAACTGTGG	ref_828_negative	8	12	9	7	13	11	17	11	18	15
CCTTAACACACGGGAG	ref_828_negative	56	98	52	59	92	59	87	61	105	47
GCGAATAATGATAACT	ref_828_negative	37	63	53	35	52	34	42	36	43	40
AGCCCCCGACGTTGCA	ref_828_negative	2	4	6	1	5	2	5	1	6	2
ACACGCGTCGCATAAG	ref_828_negative	23	21	16	19	27	20	20	15	26	19
TCTTCATAGACGCGGG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
GGGTGCACCTCACAAA	ref_828_negative	13	18	15	17	11	14	19	9	14	4
AGCTTTATAACCGTGG	ref_828_negative	156	243	149	159	233	136	239	132	290	122
ACGGGATCCTTCTGAC	ref_828_negative	2	14	20	8	9	8	13	7	17	9
GCTGATTCCGTCCTAC	ref_828_negative	10	18	16	9	17	17	23	14	25	12
CGAATATGTACAGAAC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TTCGGTGGGTTCTTCT	ref_828_negative	6	8	3	10	8	3	12	7	7	1
CTTGCAATATTCAGTC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CAACGAATCATGCAGG	ref_828_negative	45	46	56	38	43	34	50	29	53	26
CTATACCCGATTTAAT	ref_828_negative	6	20	4	3	18	16	20	7	21	3
ATGGCCCTATCGATTG	ref_828_negative	14	22	11	17	19	9	16	18	31	21
CTGCGTGAGACGCGGT	ref_828_negative	16	14	13	12	12	11	18	12	26	14
GTCCGCAGCAGGCCTG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
GAGCTTCATTCCGGCG	ref_828_negative	27	36	25	15	40	21	32	13	30	21
GTACAACTCGTGATAT	ref_828_negative	2	0	0	4	1	0	3	2	2	0
TTACCCGTGCATCTGC	ref_828_negative	26	94	34	26	90	33	95	34	133	42
TGCACGGTTCAATGTA	ref_828_negative	5	14	15	11	16	8	13	2	8	6
TTGTCGGCCGATCATC	ref_828_negative	95	111	93	102	119	76	107	75	113	76
CCTGCCATTTCTTATG	ref_828_negative	15	34	18	17	35	20	43	18	41	10
ACATGTCTAAACAACA	ref_828_negative	2	10	5	0	3	2	6	2	5	5
CGTGTACTTAATTTAC	ref_828_negative	28	45	39	37	61	33	47	32	52	23
CTTGCCGTTATGTGGT	ref_828_negative	4	5	3	2	9	8	6	1	5	1
ACCATTTCTTTGTTAC	ref_828_negative	26	38	29	26	38	20	45	25	40	15
TCTGAGTGTCCCCGGC	ref_828_negative	8	17	9	12	10	9	14	11	11	7
AAACGTATCTACCTCC	ref_828_negative	59	86	73	37	83	49	93	68	102	49
ACGTAGTAAGTTCGTT	ref_828_negative	19	32	18	20	34	28	41	26	30	15
AAATACTCTCTAAAAA	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CGTGGAAATATTGACT	ref_828_negative	18	29	26	22	19	20	25	15	26	23
AGCCTGTCGCTAAAAT	ref_828_negative	16	43	27	18	36	19	42	15	35	20
TTTGATGCAGATTGCC	ref_828_negative	42	57	49	43	73	48	67	46	63	35
CGTTCCGCGTCCGTCT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TGATGGAGCTGGGGGC	ref_828_negative	31	40	34	25	38	27	26	34	47	31
TACAGCACAATGTCTC	ref_828_negative	24	31	25	17	38	20	28	18	33	13
GTTTTAGCTCAGATAG	ref_828_negative	26	32	31	30	44	21	40	22	54	32
CTAAGGTCGTAATATT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TGGTACTGGCGTCGGA	ref_828_negative	132	228	146	112	169	114	193	112	188	94
TTTACTATCGTCTGTG	ref_828_negative	8	11	12	5	12	9	15	15	20	8
TACGGCTATTTAAGGT	ref_828_negative	22	52	24	16	36	22	40	18	41	26
GTCTCCTCTTCTGCAT	ref_828_negative	10	7	5	3	6	3	6	2	7	4
CACCCGATCATGTATT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TGCTGCGCATTTGCGC	alt_828_negative	8	26	16	12	20	12	37	8	38	6
AGTCTTCCTAGGTCAG	ref_828_negative	15	25	22	16	12	10	22	2	29	10
ACTTTGTAATTCAGAT	ref_828_negative	51	57	44	41	55	37	76	29	65	29
TGTTGGCCCTCTGGGT	ref_828_negative	3	8	9	4	9	2	6	3	4	3
AAGGTGTGAGATTCTC	ref_828_negative	17	38	21	13	27	23	29	18	22	17
TTCTTTATGTTTGCTC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TACGTTATTGACCCGC	ref_828_negative	28	61	42	33	49	42	59	43	58	32
AACTATTAGAATCCGA	ref_828_negative	6	8	9	3	4	1	9	2	4	0
ATGTACAGATGTTCAA	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TCGGGGTCTGTTCTTG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TTTTCGTTTTAGGTCG	ref_828_negative	11	21	18	11	22	18	18	11	21	9
CGATAATGCCATGTGG	ref_828_negative	19	30	30	19	36	29	51	22	35	25
TCCGGTGCCATGTGCC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
ATTAAGCTGTCTCGAA	ref_828_negative	34	32	35	26	31	18	44	19	38	32
CATCTTGTAAGTAAAC	ref_828_negative	131	197	187	156	234	145	218	144	248	121
GACAGTGCCCTGGGAC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CGATTATAGCAGTGTG	ref_828_negative	11	9	6	5	6	8	4	3	8	4
TTATATATAGTCTTAT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
ATGTTTGATTAAGGCT	ref_828_negative	30	47	37	39	49	37	45	41	50	28
CGAGTTGAGCATCCCT	ref_828_negative	73	117	78	83	99	73	133	57	127	45
TGCAAGACGACATGAC	ref_828_negative	15	15	21	16	23	17	32	13	25	7
CATCCTGCAATTTAAT	ref_828_negative	24	42	32	19	42	26	36	24	35	20
AGTCTATCGGCTTTGT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CTAGCATCACACTTTC	ref_828_negative	13	26	10	20	25	11	17	7	22	14
TAGTTATTGCCTTATC	ref_828_negative	3	2	0	1	2	0	4	5	8	1
ACTTCTGCAATCACAG	ref_828_negative	67	97	74	65	103	70	111	61	106	54
TTGGTTTCTCTCCCGT	ref_828_negative	4	22	5	6	31	5	26	8	28	4
AAGATGTTTTCAGATA	ref_828_negative	40	46	42	37	42	18	59	33	52	35
CCGAGTTCGGTTTTGC	alt_828_negative	64	104	97	81	107	69	131	70	134	56
GGTAACGTCATCTCAC	ref_828_negative	36	28	40	34	28	30	33	33	38	37
TGTGCTCTGGACTTTG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TTTCATCGAGGACAAC	ref_828_negative	14	14	22	13	13	18	18	12	13	14
CCAATCTCGTAGGACG	ref_828_negative	5	22	5	3	13	8	17	6	28	4
TCCTATATACTAGGCG	ref_828_negative	3	6	2	5	3	1	3	1	1	2
TTTGCGCTACTCAGAT	ref_828_negative	48	80	68	60	110	45	97	61	86	52
TCTTCATTGCGTCTCG	alt_828_negative	22	28	34	25	33	19	28	14	36	9
CCTCGATCAGTGGGTG	ref_828_negative	7	35	12	7	29	16	35	9	36	9
TATTCCATAGGTAGAA	ref_828_negative	20	26	21	16	32	18	33	21	32	17
ACATCTCTAAGGAGGG	ref_828_negative	42	52	48	27	58	32	59	27	71	29
CCGTATACTTGAACTT	ref_828_negative	3	5	3	11	7	2	8	5	8	4
CAACGTACGAAATGTT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CGAAGCTCGTGTGAAG	ref_828_negative	2	4	6	3	7	5	3	6	4	4
ATTCAGTCAGCCTATA	ref_828_negative	7	16	21	8	10	20	9	10	14	13
CTTTGGTTTGTTTAGC	ref_828_negative	3	9	9	4	7	4	9	3	5	4
ATAGACCTCACAGAGC	ref_828_negative	26	33	26	14	28	19	37	19	35	19
AGTTACATATCATATC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
ATTCACTTTATAGCGC	ref_828_negative	3	2	3	5	3	2	1	3	4	5
CATAGCGTTTTAGCTT	ref_828_negative	5	3	1	0	4	1	13	2	8	0
CCACAGGTACGAGCTT	ref_828_negative	2	4	0	0	0	2	3	2	5	4
GCTTTACTCACGTTAT	ref_828_negative	20	27	23	24	31	16	33	19	29	24
GTACCTGGCATCATGC	ref_828_negative	81	165	105	97	127	64	126	69	145	69
AAATCGGCATGTACTG	ref_828_negative	70	73	78	71	97	54	105	45	99	49
GCGATATTTTCGTTAA	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TTCCCATGCAGATTGA	ref_828_negative	15	24	19	9	28	12	27	11	24	6
GCTCGTCAGGCCGAAT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TCAGTACTGCCTTAAG	ref_828_negative	7	18	22	12	25	10	35	14	34	14
ACCAAAGATCTCAAAA	ref_828_negative	2	4	2	0	3	4	4	2	4	0
CTCGCGCATTACGCCT	ref_828_negative	2	4	5	2	7	4	4	7	7	1
GCTTAGAAGTGCTATC	ref_828_negative	11	30	22	10	25	15	23	15	22	7
TTATGGCTATAGCTTG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TATGGTCTAGAGCGAC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CTGTTTTTCATCACTT	ref_828_negative	0	4	2	2	7	4	3	2	4	1
GAATCTTTTATGTCTT	ref_828_negative	3	0	0	1	0	1	0	0	0	0
ATGTGTATTGTATAGA	alt_828_negative	16	28	13	15	30	22	26	13	42	15
ATGGACTCATCTGAGT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TACGAGACGCCCATTC	ref_828_negative	42	65	63	34	67	37	55	33	66	42
TATGTTTCGTTATACA	ref_828_negative	0	0	0	0	0	0	0	0	0	0
ACAAGTCGTTTCCGTT	ref_828_negative	9	20	20	10	13	5	18	14	14	6
GGCATCCACCGTGGCA	ref_828_negative	41	72	64	46	64	44	54	33	56	36
CGGTTTAACGTTCGCT	ref_828_negative	28	37	24	18	48	35	50	22	44	22
TCGTATATTCTAGTAG	ref_828_negative	12	21	11	16	15	5	24	11	17	16
GGTAGACAATTCTACC	ref_828_negative	12	29	12	10	28	6	30	11	14	6
AGTCCAGTTCGCTTAT	ref_828_negative	27	28	15	26	36	13	28	25	28	15
TCTTTTCTTTACGCAT	ref_828_negative	69	107	84	56	120	62	96	73	135	67
TTCCGGCTCTCATTAC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TACTCGGAGTGGGTAA	ref_828_negative	28	54	36	36	50	30	40	25	45	38
TTATCTCCGCACCATT	ref_828_negative	32	39	40	41	55	32	58	40	68	36
CGACGGCGATCCACTA	ref_828_negative	15	14	14	8	17	8	12	7	16	9
ATTGAGCGTAAGACAT	ref_828_negative	15	27	25	12	19	15	19	4	19	26
GGCGCATGTGCCGGGT	ref_828_negative	28	44	19	30	47	17	53	15	48	22
CATCTATTCAAAAGGC	ref_828_negative	14	22	10	23	33	11	20	19	17	14
CTGACAGCAACCGAGT	ref_828_negative	3	7	8	5	6	8	13	8	9	5
TTTAAGTTGGCACGCC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TGGTGAAGGCCTCATT	ref_828_negative	7	10	12	4	11	7	10	14	15	6
GGTATCCATCCTGTGC	ref_828_negative	19	47	41	23	45	16	32	18	47	23
ACTAGAGGGGAATGAT	ref_828_negative	25	35	21	20	32	13	32	14	31	20
GCTAGTGAAGACAGCT	ref_828_negative	22	60	30	47	80	44	78	26	70	43
GCCTCCATCCATTGAC	ref_828_negative	26	60	21	21	55	26	68	24	74	13
TTCCGATTGTCACATA	ref_828_negative	0	0	0	0	0	0	0	0	0	0
GCAGCCCTTGGGCTTG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TAATAGAATCAGTATT	ref_828_negative	9	14	5	4	8	9	19	5	15	5
GTCTTGTCGACGATTT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
ATTTCGTACATGTTTT	ref_828_negative	0	2	5	1	1	4	1	1	0	0
AAACAACCGCGGCGCT	ref_828_negative	58	64	70	50	65	54	84	58	87	58
CGCCAGCTGTTTAGAT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
GGACTTCTGTTGTGCG	ref_828_negative	9	12	9	7	12	5	11	11	18	11
GAGTCTACATTGGCGA	ref_828_negative	0	0	0	0	0	0	0	0	0	0
AATTTGAGGTTACCAA	ref_828_negative	61	105	73	70	82	44	95	69	107	59
CCTACTCCGTACCTGC	ref_828_negative	6	33	10	8	32	6	30	4	28	10
TATTATTTGGTTCTTT	ref_828_negative	15	22	18	14	19	12	15	15	26	20
CTGTGACCCGCTCTTG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TGTGCCCTCGCCATTA	ref_828_negative	7	19	13	19	21	9	25	17	20	11
CTACGGGCTCACAGGT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
GCTCGTAGAATACGAT	ref_828_negative	51	96	81	72	77	65	103	67	103	71
TCCTCCCAGCCCAATT	ref_828_negative	0	8	1	1	1	1	4	1	5	3
GTAGGTGCGATTCCGG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
GCAACCCTCCCAAGCT	ref_828_negative	1	1	2	3	2	3	1	1	3	3
CTATACGTAATATGTA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TCGTATGGCCCGACGT	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CAATCGCGTCTCGGCC	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CCCTGAATCTGCCTTA	ref_828_negative	22	24	21	15	17	15	20	16	23	11
ACGGAGCTTTTGAGTG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
CGTCCATTCCCGGGGG	ref_828_negative	0	0	0	0	0	0	0	0	0	0
TATTTCATTCTTCAGC	ref_828_negative	43	44	41	32	55	34	44	36	54	21
GTGATCGCTCAAGGTT	alt_5941_new	0	0	0	1	0	1	0	1	0	0
ACTGATCTGTTCAGCC	alt_5941_new	59	81	57	76	62	49	80	60	76	52
CTGGATATCGGCTACG	alt_5941_new	3	3	4	3	1	2	3	7	3	3
ATTGGAATGAGTTAAG	alt_5941_new	30	24	29	18	42	25	37	13	40	38
CAAGCCACCGACGGGG	alt_5941_new	65	89	80	80	104	57	88	74	134	66
GGTTCTTCTCGTTCCA	alt_5941_new	1	4	2	2	0	0	0	1	1	2
TTGTCTTGACCAATTG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
CTGTCTTTGGTTCGTC	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TCTCCGTGTGGTTTGC	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GGGACAATTTTCTAGA	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GGGTTGGCAGTTCGCA	alt_5941_new	46	65	56	63	46	45	50	41	64	29
ACGCTCGGCATGCAAT	alt_5941_new	8	8	4	9	4	6	8	1	6	3
GGAGTCACGTTATCCC	alt_5941_new	31	25	25	17	25	24	29	19	37	21
ACCACTTATTTTTACG	alt_5941_new	4	10	4	0	8	5	6	3	6	2
GTTGACTTAATTGAGA	alt_5941_new	11	17	12	14	20	14	27	15	24	8
AATTATATGCGATCTT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
ATTTGGGTTTAGGGCT	alt_5941_new	9	18	14	14	20	11	23	13	16	17
TTTGGTGTATCATGGC	alt_5941_new	16	15	16	16	7	10	14	12	13	9
CTAGTCACCACAGTGC	alt_5941_new	46	53	31	35	64	45	56	44	89	36
GTCCGCGTCAGCTCCG	alt_5941_new	6	15	14	6	12	15	9	14	6	13
TCACACTGCTGCGGTG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TAATTGACCGTTCCCG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TAAACCTTTTACTCTA	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GACTGTTGACTACCTT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GGTGTACTACCGCAGT	alt_5941_new	19	22	22	9	12	23	14	14	9	7
TCCAATAGGGAACTGG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TAGACTATGAGAGAAA	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TGTCACAGGGTTTTGC	alt_5941_new	17	25	13	13	21	12	14	10	26	14
TCTATGCTCGTGGTCG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
AGGTCCACAATGGTTA	alt_5941_new	42	14	47	48	27	42	14	36	20	32
TTAGGTCATCTTCCGC	alt_5941_new	25	25	34	10	21	21	28	20	24	12
ACCCCTGTCCTATTAT	alt_5941_new	112	119	135	98	126	103	130	103	141	115
GGATCCCGTCGTACCA	alt_5941_new	13	24	18	18	32	13	29	10	24	16
AGACGTACGGGTAGAC	alt_5941_new	48	63	54	43	65	47	72	58	48	39
TTTGTTTTCTTAATTT	alt_5941_new	14	10	9	14	17	14	19	7	8	8
ATATATTTTGCGTCCA	alt_5941_new	1	2	5	2	1	3	6	7	6	3
TTTGACTATGGATGGG	alt_5941_new	16	11	16	11	21	18	21	14	20	11
GACACTCTGAGGCGCT	alt_5941_new	3	7	7	5	7	9	8	7	9	5
ATTCGTGCTTCCAATC	alt_5941_new	56	49	42	33	53	40	51	34	54	27
TCCGCGTAATTCCAGC	alt_5941_new	9	7	16	6	14	5	5	7	10	10
TGACCGGACTAATGGT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TGTCGCGTGAGGCAAC	alt_5941_new	25	31	33	16	14	15	28	15	29	21
TGGGTTTTTTGTTGTT	alt_5941_new	27	12	28	16	32	19	28	13	20	17
CACACGTCTAGTTCTC	alt_5941_new	20	41	25	31	43	21	57	26	46	19
TTTGCAGCCATCCCAT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TATGATCCAGGTGGCA	alt_5941_new	40	63	25	37	51	36	39	17	70	25
CTCTTTTAGATTCAGG	alt_5941_new	26	35	42	33	40	31	29	32	32	30
GTGCCTGTCATACGGA	alt_5941_new	5	10	8	5	14	2	8	2	9	1
ATCCGCAGCATTTTTA	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TCAACTCCGAGTTTTT	alt_5941_new	10	19	12	6	17	6	7	10	11	9
TGCTGTCCGTCTCGAT	alt_5941_new	15	13	14	11	14	8	11	13	14	11
CCCCCTGTCCTATTAT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TTCGTTGCCTGTTATC	alt_5941_new	4	4	7	6	3	6	6	8	1	5
GAAACCTGTCATTTCC	alt_5941_new	9	9	6	1	8	9	7	0	7	5
TTGTTGAATATTGACC	ref_5941_new	32	24	34	38	45	31	33	29	26	29
TACCAATAGCCAGTCG	alt_5941_new	169	181	191	164	207	143	193	157	207	159
GGACCATAGTGCTCAC	alt_5941_new	0	0	0	0	0	0	0	0	0	0
ATTTGCGATTCACCGA	alt_5941_new	4	8	8	4	3	3	7	2	6	3
GGTGAAGGTGTCTCGC	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GTCTCCATCAAATATT	alt_5941_new	10	6	10	3	4	12	6	10	8	8
CGTACCGTCTTTAGGG	alt_5941_new	5	8	3	5	4	2	2	7	4	2
CGTCGTTCCTTCGCGT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
AAACTTCCACCTCAGG	alt_5941_new	27	23	22	19	24	13	34	27	30	20
TTAGGGGTGAAACCGA	alt_5941_new	7	21	22	16	17	19	23	16	22	14
TGTGAGGTCAGTTAAT	alt_5941_new	21	31	30	22	33	22	43	22	27	24
TGGTCAATCCTAGTCC	ref_5941_new	17	27	30	16	28	8	27	16	27	16
TTTCTCCTTTAATAGT	alt_5941_new	4	7	4	7	7	5	9	6	3	10
TCACGTTTGCGCTACG	alt_5941_new	15	14	17	18	22	14	21	10	18	14
TCCAGCATACGTGCAC	alt_5941_new	0	0	0	0	0	0	0	0	0	0
CATTTGTCTTTGGAGA	alt_5941_new	42	51	37	46	38	26	70	32	53	28
TGGTATACCGACGGAT	alt_5941_new	13	15	13	14	17	12	22	10	21	11
CATGCGGCATCACACC	alt_5941_new	25	46	29	34	29	33	50	33	45	32
CTGGTCGTGCGTGACC	alt_5941_new	2	2	1	0	0	2	0	0	1	1
TTGTTCTCACCGTTTA	alt_5941_new	1	4	3	3	3	2	3	1	5	3
TTCGTCTGATTGCCCG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TCGGTACCGCTTCCGG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GTGGTACTGAGTCAAT	alt_5941_new	22	38	23	19	28	17	32	17	30	24
TCGTCAGTAGTCGATT	alt_5941_new	6	10	13	17	11	11	4	15	14	10
TTGTATTTCCTGGTCT	alt_5941_new	16	15	25	18	9	12	18	13	25	8
ATTTGTGATTCGCTAA	alt_5941_new	0	0	0	0	0	0	0	0	0	0
ATATAGAAGATTAGCT	alt_5941_new	46	66	78	41	68	54	84	53	77	36
TTGTCTGCTCTTTTTT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
CGATAGACAGGCCATC	alt_5941_new	1	10	4	7	7	1	4	4	9	6
GCTTGCTCTCCAAGGG	alt_5941_new	69	67	76	60	65	73	58	61	87	50
GCTTTCTTGATTTGTT	alt_5941_new	9	9	13	8	9	7	11	3	6	6
CGACTAGCAGCTGACT	alt_5941_new	7	21	21	9	10	15	9	9	7	12
GAAACCCTTGACTCTT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TTCTTTAGCGCAACAT	alt_5941_new	60	48	61	61	79	55	66	51	65	47
CTTGCGTCTCCATCGT	alt_5941_new	13	19	20	24	16	21	20	24	30	18
ACCCTCAATTTGTTAC	alt_5941_new	7	16	10	8	7	6	3	8	10	9
GTGTAATATAGCGTTC	alt_5941_new	0	0	0	0	0	0	0	0	0	0
ATGAGGCTGACGAATT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
AATCAGGCAAGGCATA	alt_5941_new	10	9	7	9	12	5	12	8	14	9
GACATTTACCTCGTTG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
CATCTTTGAAGCATGG	alt_5941_new	20	22	18	17	17	9	20	15	24	16
TCTCCTGCTTCGCTTA	alt_5941_new	28	31	33	28	39	24	29	28	48	22
TTTGTAGATTTCCTTT	alt_5941_new	6	8	5	7	11	4	7	4	11	1
CAGGACGTGCATATGT	alt_5941_new	33	41	55	37	42	36	33	25	42	25
TCCGTAGCGTAGACTG	alt_5941_new	14	29	24	33	22	20	32	21	31	22
GCTCCGCAGATCCAAG	alt_5941_new	20	12	18	16	20	19	15	17	21	11
TGATAGATTGTTGGTG	alt_5941_new	76	75	78	52	86	58	94	61	77	60
GAGTTCTCTATCTTGT	alt_5941_new	59	77	83	61	94	58	96	65	88	48
ATTACCCCCGTGCCGA	alt_5941_new	87	82	104	104	81	87	103	72	116	91
TCCTAGTTCGGGTGAG	alt_5941_new	11	9	15	8	11	4	14	12	25	10
CACTAGACCATGGTAT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TTCCGGCTTTAGCAGA	alt_5941_new	16	9	12	10	7	13	14	7	14	9
AGTTGTGAAGTATATG	alt_5941_new	14	9	10	5	13	12	13	7	14	3
ATTCGTTGTTCTATTG	alt_5941_new	24	23	39	35	29	17	35	25	38	32
CGTCTGAACGTTGACG	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TCCTGAGTTAGTCAAC	alt_5941_new	48	81	62	60	69	64	75	40	76	37
TCTACCCGGTGAGAGC	alt_5941_new	13	25	21	12	23	6	12	13	20	9
GATATGTTTTTCCACT	alt_5941_new	16	12	18	17	15	20	19	13	16	18
CACCGGAGTCCCTGCA	alt_5941_new	0	0	0	0	0	0	0	0	0	0
TGGTTTTACCATGTCT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GACTTTCTTCAAACTT	ref_5941_new	35	25	43	51	47	45	41	38	35	34
TAGTGCCCGGAGATCT	alt_5941_new	42	55	46	43	54	29	46	31	49	25
CTCTAGGCCCGGATAA	alt_5941_new	6	19	15	16	19	15	25	16	22	18
CTTTGGTTCTCTGTAC	alt_5941_new	21	28	26	20	25	17	29	20	31	17
TCGGTTAGCAGGCTCT	alt_5941_new	133	175	119	105	197	85	176	95	165	107
AGCAGTGCACATTAAC	alt_5941_new	16	21	17	15	22	14	16	20	23	16
TAATGGTAGCCCGTGG	ref_5941_new	20	10	12	21	15	19	19	23	21	17
TCGCGGCTGAAGCACT	alt_5941_new	0	0	0	0	0	0	0	0	0	0
CTCCCGTGAACCTGGC	alt_5941_new	0	0	0	0	0	0	0	0	0	0
GTAAGAATGCTCTGGT	ref_3359_RC	14	4	13	12	10	10	7	10	18	9
GCAGGAGAGTAAACGT	ref_3359_RC	46	44	41	53	50	29	32	41	50	45
TTCTTACGATTCCTCA	ref_3359_RC	1	1	2	3	4	1	2	3	1	0
CCAATCGAGATTGTAG	ref_3359_RC	87	86	94	78	87	82	94	89	78	70
CTTACTCTTTTCTCAC	ref_3359_RC	26	30	35	24	45	21	46	34	30	23
GAAAATCAAGTCTTGG	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TATTCTTGTTTCGTCC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
AGCAATAGACTGACTT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCTCTGCACCTG	ref_3359_RC	19	24	22	14	19	20	30	16	20	19
GGCGTTAGATTCGGGT	ref_3359_RC	38	24	36	49	30	41	35	33	34	29
ATAGGAGATTCACCAT	ref_3359_RC	90	88	95	89	71	78	107	78	105	60
CCGCCGGTAAGCCCCC	ref_3359_RC	94	93	123	98	111	100	115	84	105	84
AATGTTTGAATCAAGC	ref_3359_RC	110	145	132	97	135	108	141	105	166	107
AAGATAAACAGGGTAA	ref_3359_RC	34	33	37	30	29	23	32	32	30	28
CTTACTCTGTTATTTC	ref_3359_RC	103	101	123	114	71	98	102	90	138	90
TTAAAAAGTACTCTGC	ref_3359_RC	50	78	86	50	49	50	74	48	61	46
CTATGAGGGAACATGG	ref_3359_RC	37	42	62	47	42	51	40	45	45	46
ATTCTAGTGATATATC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
CAATAATTCTCATCAG	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
ACCACTTTCGGGATAT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
ATGGGTGCTCGGGGAT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GTCTTCGACTGACTGT	ref_3359_RC	100	103	103	114	107	95	97	101	126	84
TCCTGTAACCGTATTT	ref_3359_RC	60	91	67	62	65	73	95	60	83	70
GGTAGTGGGGGGTTCT	ref_3359_RC	8	4	5	6	5	4	6	1	7	4
GGCGACTGTTTAGATG	ref_3359_RC	9	41	17	15	38	16	40	20	63	14
AGATGTTGTGCTTATG	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
CATTACGGCACTAATA	ref_3359_RC	39	60	60	62	63	48	46	53	67	58
TTGTGCTTTATGGGCC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
ACCCTTCTTTCAATTT	ref_3359_RC	36	28	44	34	31	41	40	31	31	27
TACATCGGCGTTCCAC	ref_3359_RC	30	31	43	29	46	20	32	34	32	23
GACTGGGTTCATCCAA	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
CTCATCAGACTTCCGA	ref_3359_RC	23	26	40	28	31	32	28	33	18	34
CCCTAGCCTGGCTTTT	ref_3359_RC	28	38	23	19	36	14	42	18	31	30
ATGGGGGGGGTATTCT	ref_3359_RC	8	6	7	7	4	4	10	2	8	3
TCCAGTTTAGATCTTC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TGCCAGTTCCGGCTTA	ref_3359_RC	68	97	86	76	87	89	90	65	70	67
TGCTAGTTAGTCGATG	ref_3359_RC	31	36	37	33	30	25	29	15	25	20
TCTTAAAGTCACATCA	ref_3359_RC	48	41	62	48	33	33	40	33	30	46
GACGTCCATATACTGA	ref_3359_RC	16	9	17	11	3	11	18	17	9	7
TTGGTAGAACGACTGA	ref_3359_RC	22	40	43	37	35	39	48	19	45	27
CTAAGTCCGCAATGAT	ref_3359_RC	94	64	80	77	98	93	91	55	98	78
TTCGTTCGACCATACG	ref_3359_RC	41	50	44	25	51	32	48	29	73	17
GATTTAGGTCTAAATA	ref_3359_RC	38	52	62	38	36	40	39	28	36	32
GTTGTATATTCGGAGC	ref_3359_RC	90	97	105	83	93	78	71	63	95	70
TTAAAGTCAAGTTTTG	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
AGTCATTTTTCTGCGA	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GGGTTACTTCGAAGTG	ref_3359_RC	12	15	20	14	11	5	15	21	20	8
TAGCCCTAGACTTAAT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TCCTGGATACTACGTT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GCGCGATTTCAATCGT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GGTACACCTGTCGTGA	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
ACCGAAATGCTATATG	ref_3359_RC	4	6	8	7	1	7	3	7	4	3
TGGGTGCGATTCTCTA	ref_3359_RC	51	39	58	35	54	59	50	43	33	43
TTATTTACTGTGGTGC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TTGGACCGAAGATGTG	ref_3359_RC	100	130	117	122	156	108	164	104	163	108
TCTTTTTCGGTTACTT	ref_3359_RC	38	40	52	34	35	40	48	27	40	30
GTTTTGAGCGAGTCGC	ref_3359_RC	29	52	53	49	39	51	55	43	45	43
AATTTAAACGTAGCTG	ref_3359_RC	16	18	24	11	10	19	16	17	7	14
TGCCATATATTGGGCT	ref_3359_RC	28	27	30	26	16	20	28	27	25	18
TTAGGAGCTGTAGGTG	ref_3359_RC	16	13	14	23	16	13	17	8	15	9
CCGGCATTAATATTAT	ref_3359_RC	22	31	17	13	25	16	22	17	24	18
GGTGCATCGGAACCTT	ref_3359_RC	30	30	41	40	26	34	35	34	49	36
GGGGAACACCTACGTA	ref_3359_RC	13	5	15	9	13	12	17	12	12	16
CGCATTTACGTACCTC	ref_3359_RC	2	11	4	0	8	5	3	0	8	2
TACTTGGATCCGAGCT	ref_3359_RC	67	42	82	59	92	60	82	71	96	41
CGTTACAGGTCCGCTT	ref_3359_RC	9	12	15	8	11	5	10	10	8	6
GTCAAACATCGGATTG	ref_3359_RC	45	48	61	53	56	38	46	32	38	51
GAACTGGTTGTGGTAT	ref_3359_RC	16	18	26	21	15	13	16	18	22	12
CTCGAGGGGAGGCATT	ref_3359_RC	114	101	151	111	107	110	111	98	115	78
AGCTTGCCTTTACTTT	ref_3359_RC	38	60	76	47	32	35	53	57	54	52
AGCGGGTTTTATTTTG	ref_3359_RC	83	71	98	52	85	65	75	69	112	50
CAACGTTAGCACAAAG	ref_3359_RC	32	38	47	46	44	43	34	31	41	29
CTTTTGTTAGTAATTT	ref_3359_RC	98	70	115	81	101	81	99	85	124	69
ATGCCTACAATTCCGG	ref_3359_RC	126	168	184	178	159	148	169	129	210	139
GAGCCTAGGTCACCCG	ref_3359_RC	38	40	33	28	40	22	35	32	26	26
TCGTCGGGGCACACTT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TGTATGCGTGATTACA	ref_3359_RC	46	51	50	48	48	55	64	42	35	24
ATTCTTGCGTAGTCAC	ref_3359_RC	64	60	74	68	56	50	66	49	45	36
GGTCGCTAGGCTGTAG	ref_3359_RC	52	56	76	51	67	53	48	47	55	51
TTGGGGAACTATTCAT	ref_3359_RC	19	16	24	18	18	35	16	13	20	19
CTGTTATCTGCTGAAA	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GTGCGTTAGGCATGGC	ref_3359_RC	11	12	9	5	6	2	9	8	7	5
ATCGGTTAGGAGCACA	ref_3359_RC	19	24	22	14	24	12	23	13	25	11
CTGGGATAATCTAGAT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TGTGATTTGATAAGCA	ref_3359_RC	122	138	133	136	122	101	115	112	135	109
CCGTTTCGCAGCAAAC	ref_3359_RC	44	37	44	41	47	45	41	48	30	53
AGCAGTCTATATATTT	ref_3359_RC	22	17	14	20	26	11	15	16	24	19
GTCTCCTGCTTATGGA	ref_3359_RC	116	134	154	144	140	140	154	152	141	129
TAATCTAGGCTTCTCC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TTTATGTTCCATGGTT	ref_3359_RC	10	14	16	8	16	12	12	13	11	7
TCAAAGGTCTGTCTTG	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
TCATTACCTTGTTCTG	ref_3359_RC	4	10	8	12	8	8	5	9	7	3
CAAATCCTCTGACCGC	ref_3359_RC	166	171	172	178	151	126	206	134	173	119
ACTTAGCTTGATTATG	ref_3359_RC	47	42	28	29	41	35	50	40	32	29
TCTTGGCTCCGGAATT	ref_3359_RC	77	81	98	71	79	65	85	76	93	67
AAGGTTCTTCGCGTCG	ref_3359_RC	71	69	70	60	62	59	64	64	87	42
CTTCTTCACAACGTGC	ref_3359_RC	5	9	12	17	7	8	6	10	11	10
CGAGTTTATGGCGGAT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GGAGGCTACCTCAATA	ref_3359_RC	18	22	22	20	32	17	19	23	13	21
TGTGTCTTAAAACCCG	ref_3359_RC	50	51	64	62	71	49	60	63	68	52
GCAAACTGCGGTGGTA	ref_3359_RC	74	72	89	67	60	62	53	62	69	63
ATGTCTATACCGTTTT	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
CCGTCGGGCGGGTCTT	ref_3359_RC	0	0	0	0	2	0	5	1	5	0
CTACAGATAGCCCTTC	ref_3359_RC	52	49	61	54	73	54	58	47	64	48
AGTTCCTACCTGCTGC	ref_3359_RC	8	13	13	6	12	12	8	10	15	4
AAGGATGAGGGGAGCG	ref_3359_RC	26	37	71	30	48	40	41	31	45	41
GTTAATAACCGAATGC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
ATGGGGGGGGGTATTC	ref_3359_RC	0	0	0	0	0	0	0	0	0	0
GTTCGTACATGTGGCT	ref_3359_RC	8	9	8	15	12	4	6	9	12	4
TATTACATGGATTGGT	ref_3359_RC	16	12	24	20	24	16	21	10	20	23
TAGTAGCTGCCCAAAG	ref_3359_RC	59	62	90	74	65	76	73	73	65	68
GCTGACTGGGTGCACC	ref_3359_RC	10	23	23	20	17	19	20	16	25	10
TCCCAGGGCAAGGTAT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TCGTGTTCTCATGCTA	ref_2632_RC	59	67	73	34	67	50	74	53	85	45
AGAAGGCTTTGAAATG	ref_2632_RC	18	36	28	19	28	33	34	25	48	13
CCTAAATACCACTTCT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
GGGCGTTCTGAGGCTC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TACCTGGACGAAAGAC	ref_2632_RC	47	82	49	40	92	37	88	45	75	39
CAATCAATGTACAACT	ref_2632_RC	2	32	8	8	33	14	31	11	42	8
CTCATGGTTTAGAAAG	ref_2632_RC	42	43	40	25	46	32	59	31	48	31
CGATATGTGATTTGCC	ref_2632_RC	3	4	4	3	4	6	1	6	6	1
TGTGGTTATAGTATCA	ref_2632_RC	18	41	28	20	43	26	33	16	37	18
CTCCGCAGGTGCATGA	ref_2632_RC	27	47	36	20	19	20	43	13	38	21
ACGAACGATCTCTGCA	ref_2632_RC	1	1	1	0	0	0	1	1	0	0
CATGAGGGGAGCAAGT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CGGAAACTCGCCCACG	ref_2632_RC	7	23	9	6	22	4	31	9	29	6
ACATGAAGTAGGTCAT	ref_2632_RC	20	27	22	18	22	24	27	25	28	18
CGTGTCGTTAGGTCGA	ref_2632_RC	5	13	13	11	24	4	19	7	9	5
TACTACCTAACAAGAT	alt_2632_RC	389	467	426	365	427	328	460	329	442	293
TTCTTTAACAATACCT	ref_2632_RC	171	244	180	181	251	158	227	174	240	132
TCCTGCGTCTGAAATG	ref_2632_RC	83	153	101	71	136	96	110	81	132	67
ATTCTACATACCAGAG	ref_2632_RC	39	48	36	37	56	25	51	42	56	27
CGACCACTCCCAATGT	ref_2632_RC	11	56	11	18	66	15	34	15	41	12
ATCTATGGGCTTCCCT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TCCTCAGTGCGGCCCC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
ATGTAACGCGCCCCGA	ref_2632_RC	17	26	24	21	34	14	27	17	28	14
GACGACGGTCATAGTG	ref_2632_RC	55	82	66	38	84	53	91	36	75	27
TAGTTGATTCCCCATG	ref_2632_RC	4	9	4	4	6	2	14	3	8	1
CGTGATGAATGCTGGT	ref_2632_RC	1	3	0	3	0	1	1	0	3	1
TCAGCGTCGTAGCCGT	ref_2632_RC	38	43	31	36	31	28	45	36	62	30
CATAGTGCCCCCTCCA	ref_2632_RC	24	36	43	34	42	15	33	24	28	23
CGCCTTGCGTGGGTCC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGCCCTTAGTTT	ref_2632_RC	47	83	47	54	97	59	80	50	77	68
TTAATCAAATACTGTG	ref_2632_RC	35	59	40	33	75	20	50	27	65	29
GGCTTGGCTTCTTACT	ref_2632_RC	11	30	29	14	24	25	35	14	28	14
AACTACCTAACAAGAT	ref_2632_RC	1	0	0	0	0	0	0	0	0	0
TGGCCGGTTGCGTTCG	ref_2632_RC	60	67	63	66	73	71	85	66	73	50
TCTTGTGTCGCGTCAA	ref_2632_RC	14	31	17	27	29	28	40	19	26	21
TGATGCTTTACCTGTT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
ATTCTCATAAGTTATG	ref_2632_RC	24	19	29	32	32	32	38	23	38	22
AAAATCGTACCGGCGT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTCGAGCTAGTA	ref_2632_RC	8	11	13	11	14	10	14	13	9	13
GGTAGTGTGTATGTCT	ref_2632_RC	99	143	117	96	111	82	128	79	125	77
GTGGCCGAATGTACTC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CAGATATATTTTCGCC	ref_2632_RC	111	114	122	94	109	83	122	76	116	84
GATCGGCCAACGGTGG	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CTAGTTTCACGATAGT	ref_2632_RC	3	5	6	4	9	3	5	2	7	3
TTGTGAGGATCTCACA	ref_2632_RC	14	26	21	7	32	15	42	20	16	13
TGCGTTCGTGCTACCG	ref_2632_RC	0	0	3	1	1	3	1	0	3	2
GCAAGTCTATCCCAAA	ref_2632_RC	49	73	48	52	66	74	95	49	94	55
GAACCTTTAGCGGAGC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
AATCCGGCTTTTCGGC	ref_2632_RC	55	56	55	63	67	51	80	45	75	57
TTGTCACGGGTGTTGC	ref_2632_RC	8	12	3	4	11	1	13	6	7	2
GCTGCTATCCAGTGGG	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CCACCTCTACCGCACG	alt_2632_RC	24	42	26	21	53	28	54	26	62	32
TCTGACTGCTCCCTAT	ref_2632_RC	9	19	14	14	13	8	17	7	22	1
AATCTTCGGGGATCGC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
ATTACCGTCTTTCCGA	ref_2632_RC	7	1	3	2	7	0	3	2	2	10
TTACAGCGATCTCCCA	ref_2632_RC	13	14	24	18	22	17	27	14	23	14
CGTCCACGGCCCGCAA	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGCATTTTACTG	ref_2632_RC	5	4	6	0	2	1	8	2	3	2
TAGAAGCTCGCAGCCT	ref_2632_RC	21	20	18	15	27	15	18	19	15	12
CCAACCGGTCTTGGTC	ref_2632_RC	57	106	77	64	120	50	118	51	108	51
TACTCTGGGTGTTTGT	ref_2632_RC	4	6	6	4	9	3	4	4	2	5
ACGTTTGGGGGGAGAG	ref_2632_RC	43	70	55	43	67	68	61	40	85	35
TTTTAGGGGTTTGATT	ref_2632_RC	11	17	15	15	15	5	29	13	24	8
TGTCTAGAACAGTTGA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TAAGTGATCGGCGTTG	ref_2632_RC	41	54	56	37	57	48	59	45	51	54
ACCGTATTGGTACCGG	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TTGCTATCAGCTATCG	ref_2632_RC	3	4	5	2	6	8	9	4	7	2
GCACTGGATTGTTTCC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
GCATAGGATATTCTTC	ref_2632_RC	177	174	178	161	167	143	203	154	222	145
CACACACTTTTGCACA	ref_2632_RC	21	42	18	19	30	16	26	21	34	23
ATTTATATTATCGTCC	ref_2632_RC	6	14	5	7	14	9	10	6	7	6
TGGGCCTTGCTCCACG	ref_2632_RC	21	23	27	20	25	8	30	16	35	19
TTTATTTTTGTGTTGC	ref_2632_RC	37	57	56	55	53	53	59	45	58	47
GCTTTGAATGGGGCCT	ref_2632_RC	30	41	60	29	40	34	37	37	36	35
GGCGTGACGACAAGAA	ref_2632_RC	7	11	5	10	11	10	13	9	18	10
CCATGTTGAATTCTAG	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TATGCATCAGCTCGGC	ref_2632_RC	11	18	31	22	8	11	13	13	32	13
TCCTTATGGACCAGAC	ref_2632_RC	35	24	35	26	37	25	39	32	39	18
ATTATCCAGTGGCCGC	ref_2632_RC	20	31	32	23	28	19	37	27	57	20
TGGTTCTCAGTAATAG	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
AAGAGCACGTCTCAGA	ref_2632_RC	27	36	43	20	41	32	58	29	49	24
GACCGAAATTCTGCTG	ref_2632_RC	118	137	142	125	124	103	153	103	113	86
TTCTCCTTGCGCGTAG	ref_2632_RC	27	20	29	20	41	24	37	18	47	12
GGTTTTTCATTTGACA	ref_2632_RC	89	110	98	84	116	81	102	76	140	84
GCGCCACTCCTACGGA	ref_2632_RC	28	51	39	57	67	41	64	38	60	33
CCTTTCGAGCGTCGTT	ref_2632_RC	21	39	29	33	52	23	54	31	37	30
ACTGTATGGATAAGTG	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CCTCTGGTTCACGTAG	ref_2632_RC	15	70	34	29	62	26	83	11	68	27
GAGTCAGAGAGACGAG	ref_2632_RC	30	32	31	22	34	18	55	18	35	20
TATAGGTCTGTTGGAT	ref_2632_RC	22	21	18	21	21	22	23	10	20	9
CCGGATGTTACCCCTT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TGTTCCCAAGCCTATT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
AAACTCGGACAACCAT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CGTGCTCAATCTTAGT	ref_2632_RC	40	52	59	39	81	45	60	31	71	38
GTGCTCGTTATGATTG	ref_2632_RC	26	42	55	22	61	29	50	31	49	30
GTGAGTAGAGGCCAGT	ref_2632_RC	17	26	26	24	25	25	32	34	48	18
ACTGCACCGCAAGCAC	ref_2632_RC	57	61	79	56	73	44	83	68	53	66
TTTACTGTACGTGTTT	ref_2632_RC	44	61	48	53	69	40	72	48	70	50
CGCGTTTGGGGGTGGG	ref_2632_RC	16	30	24	18	30	20	25	15	28	21
ATCCGCGACATTAGAG	ref_2632_RC	11	6	3	3	5	8	8	5	16	6
TCAGCAAGTTTTGGAC	ref_2632_RC	72	178	113	105	189	71	205	76	189	102
TGAGCGTCCTGTTTGC	ref_2632_RC	11	16	9	11	11	6	12	11	16	11
GATGTCATATGACGCT	ref_2632_RC	90	107	134	103	107	98	129	106	124	82
ATTTAGTAAGAGTATT	ref_2632_RC	50	61	44	44	51	38	50	36	55	40
GTTCAGCTCGGTAGCG	alt_2632_RC	129	186	189	144	233	131	211	129	243	141
TACCACCCAGGCAGGT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CGCGGAACGACTGGCA	ref_2632_RC	8	35	19	13	24	6	27	10	27	10
GTCTCTTGAGAAACGT	ref_2632_RC	4	6	1	2	8	5	4	5	4	4
TTTACTTAGGTCTGAT	ref_2632_RC	7	3	3	2	7	5	10	5	6	2
CCCAGGTTGCGTAAAG	ref_2632_RC	34	64	60	39	76	57	65	38	64	43
AGATGGTAAGTTCTGG	ref_2632_RC	31	26	44	29	31	34	41	34	33	25
CAGTTTCTCGGGACCT	ref_2632_RC	8	2	6	4	4	4	6	4	3	7
TCTGTGAGATGCGAGT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
TTGAACCATTCGCTGT	ref_2632_RC	2	13	11	12	11	7	11	11	10	8
AGTGTTGTTTAGTTTG	ref_2632_RC	84	115	93	73	109	79	93	54	105	62
TAACGTTACATACTTC	alt_2632_RC	56	77	65	53	88	49	85	63	79	45
TCAGTTTTTCGCATGC	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
CCCCGAGGTGGTTTAT	ref_2632_RC	11	99	12	18	127	11	125	16	98	12
GTTTCCCCAGTATTTG	ref_2632_RC	119	120	149	112	142	107	183	97	165	90
AGCGACTGTTACCTGC	ref_2632_RC	6	19	11	4	15	9	14	9	20	17
CGTGCTTACATTTTGT	ref_2632_RC	43	40	36	47	46	22	44	34	48	25
ATTTACCTTTTGGCTT	ref_2632_RC	0	0	0	0	0	0	0	0	0	0
GATCAATTGTCGACCA	ref_2632_RC	59	45	55	54	47	33	54	45	54	41
ATCGCGCTGACCATTA	ref_2632_RC	18	23	25	30	46	23	30	18	31	27
CCGCGGAAGCTGGGGG	alt_3482_missing	56	68	87	53	84	52	84	59	89	49
TGCCGTGACTCTTATC	alt_3482_missing	44	31	57	48	43	55	32	44	50	39
TAGTATTAACGAGGGG	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TCTTCCTCTGGTTGGG	alt_3482_missing	52	48	54	71	48	47	61	37	52	53
GCGGAAGCAGCTTTGC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TTAATGCTACACGGTT	alt_3482_missing	43	50	69	54	34	52	24	50	50	48
ACTGGTCTCTTTCGGC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
CCCTCAGCTGACTGTC	alt_3482_missing	11	15	16	8	18	14	9	10	26	14
ACATCTTTTTGGTCGT	alt_3482_missing	29	36	37	36	35	18	41	34	46	39
TCTTGTCACTGTATGG	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
AATCAAGCAGGGTTCG	alt_3482_missing	52	59	75	61	63	53	49	58	45	58
CACTATGGTCAGCCCC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TGCTGTATTAAGAGTG	alt_3482_missing	12	12	17	18	12	21	11	16	12	22
GTCTGAGGACGTGAAC	alt_3482_missing	52	72	99	65	61	67	57	47	65	53
TAGAGTTAATGGTAAT	alt_3482_missing	6	9	6	7	5	10	8	7	2	8
GTCTCGTTCTGTGTCG	alt_3482_missing	23	17	20	22	23	21	26	21	19	25
CCTCAAGGGATGGCCC	alt_3482_missing	80	64	112	85	75	98	71	100	64	76
TAATTGTTTGTATTCC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
GTCTCATACGCAACTC	alt_3482_missing	14	14	11	14	11	23	17	16	17	15
CCCCGAATCTTATCTC	alt_3482_missing	13	24	26	24	13	17	30	17	33	22
ACCGTTACCCTTTTCA	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
ATTCTATCGTGGTTGG	alt_3482_missing	20	21	23	11	23	10	19	21	14	16
TTATGATGTTACGGGT	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
CTCATCATCCCTAGCA	alt_3482_missing	4	5	9	7	11	5	8	3	7	5
CCGTCCATACATAACT	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
CAGGTTTCGATTGTAT	alt_3482_missing	14	15	10	12	11	8	10	6	19	9
TCATTGATTTCCCGGG	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
GTTTACTCTCTGTGCA	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
ATCTGCTCAACGAATC	alt_3482_missing	162	157	195	184	148	183	142	159	156	173
GACGAGCGTCTCAGTT	alt_3482_missing	49	48	65	57	49	52	31	38	51	42
CTCCCTCGTGTCGGTT	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TTATTTTGTCCTTTTC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
GCCCTTCCCGAAATTG	alt_3482_missing	27	26	40	39	30	31	32	31	25	26
TGCTGGTGGTTTATTG	alt_3482_missing	20	13	25	17	34	22	20	9	18	9
GTGGCATATTGCGAAT	alt_3482_missing	4	4	5	2	5	4	2	6	10	4
CGATCACGCAGGCTGT	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TCATGTAGTCCAGCCT	alt_3482_missing	51	30	47	43	41	52	23	45	29	37
TGCTGTGGGTTTGCAG	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
ACTGAATAGTCTATCG	alt_3482_missing	169	150	214	181	185	155	134	146	147	174
GAGTATTTTTTAGATT	alt_3482_missing	17	27	14	15	20	19	20	11	13	13
GACCGGCCGTTATATA	alt_3482_missing	4	2	2	6	2	3	2	9	3	3
TGGATAAAACTTTGCG	alt_3482_missing	83	77	77	73	73	93	64	76	70	69
TTCGTTATGATGGTTT	alt_3482_missing	113	106	140	111	112	107	116	105	115	109
AAACTTCTGTGCAAGC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
GACTGTTTGACAGGTC	alt_3482_missing	31	33	32	29	32	26	24	30	39	21
ACCGCTTGGTCAAAGC	alt_3482_missing	10	18	15	17	19	9	20	17	20	12
TAGCCCCCTATAATAC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TAAATGCAGTCATTGA	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TGACGTTCTAGCTTGA	alt_3482_missing	7	4	9	1	2	3	12	0	5	1
TATTGTATGTTCCAAC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TACGGCAAAATATAAT	alt_3482_missing	292	232	340	280	235	287	258	208	248	269
GTTAAGTCATGATATT	alt_3482_missing	6	12	5	7	5	7	7	11	9	8
GTTCCAGGATTGCCGA	alt_3482_missing	13	21	17	26	23	11	28	18	23	15
AACTGTGACCTCTCAA	alt_3482_missing	21	19	35	27	21	15	37	27	28	12
AGTTTTGTGTTGTATA	alt_3482_missing	82	64	107	86	76	70	83	82	91	61
CGAATGTGGGGTGTCC	alt_3482_missing	26	20	17	25	23	19	22	18	14	14
CAATGCGTGCTGCGTG	alt_3482_missing	61	58	73	69	82	67	60	65	85	77
CCATAAATAAATACCT	alt_3482_missing	7	21	20	7	15	11	19	9	15	14
CTCGCCAAGGCCCTAC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
CCTCGTCGCTCTTGGT	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
CACATCATTAACGGCT	alt_3482_missing	14	8	15	9	5	7	11	15	4	6
TTATTTACTATGTAGG	alt_3482_missing	36	32	40	33	27	47	33	26	36	27
GCACGATCGTAAGAAA	alt_3482_missing	57	37	59	45	32	42	44	46	33	36
TTAATTGGGGTCCGTC	alt_3482_missing	21	10	21	23	21	19	18	11	13	18
TGAGGGCATCGTTTAG	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTGTCAGCCGCA	alt_3482_missing	10	9	20	9	18	4	15	9	13	6
CAGGCGACCACGGGAC	alt_3482_missing	17	6	23	16	21	12	16	18	14	11
AGTCCGAATTGGCCAT	alt_3482_missing	58	45	83	50	44	72	44	44	46	50
CCGGCTTCAAAACTCT	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
CCTTTCATTGGTCATA	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
AACGGCAAAATATAAT	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TCCGTCTCGTAGAGCA	alt_3482_missing	24	12	23	21	18	25	20	21	20	20
AGAGCTATTAGTTTTT	alt_3482_missing	59	56	81	105	48	71	52	74	58	66
GCCGACTGCAGACCGG	alt_3482_missing	30	14	37	27	12	28	14	17	19	25
ACGTAGGCCTTAGCGC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
GACCACACTCGAGATG	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TAATGTGTAGCGTTTC	alt_3482_missing	91	78	102	109	111	78	85	113	87	87
AACAGAAGCGAGATAC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
GAATCGGTTGGTTATC	alt_3482_missing	81	83	92	100	76	70	71	67	90	72
TTGACTTTGTCAGACT	alt_3482_missing	105	74	108	76	98	62	78	77	74	74
GAGAAACACTTAGGTC	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
GCGCGCTGTGCAGCTT	alt_3482_missing	18	13	27	21	15	20	12	16	18	9
GTCTCCTTTGTGAAGA	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
TTGGACTATCTCTCCA	alt_3482_missing	0	0	0	0	0	0	0	0	0	0
AAAAAGAACGCTGAGC	ref_5615_new	0	0	0	0	0	0	0	0	0	0
GCGGTCAAGGTCCAGT	ref_5615_new	42	57	32	32	40	34	53	33	62	35
ATTAATTAACCCGGAA	ref_5615_new	5	6	5	2	3	6	6	0	3	6
TCAGGATTCTACCGGG	ref_5615_new	37	55	41	38	61	54	59	35	53	33
GTGCGCTCCGTTTTCG	ref_5615_new	34	32	31	18	34	32	32	25	38	25
AGCTTTGTTCGTTGAC	ref_5615_new	15	20	19	16	18	11	18	14	21	8
CCTCGTGCTCGTTTAA	ref_5615_new	0	0	0	0	0	0	0	0	0	0
GTGGTTCAACCAAATC	ref_5615_new	11	24	16	12	27	12	21	15	18	20
TCACAGACTGTTTACA	ref_5615_new	2	3	2	11	0	8	5	4	6	1
TTGGGGCTATAATGAC	ref_5615_new	13	11	9	9	12	6	8	5	11	12
CCCATCTTCGTAGTAA	ref_5615_new	9	33	9	6	28	8	33	11	28	8
ATAGCCGTTACTGTAT	ref_5615_new	0	0	0	0	0	0	0	0	0	0
TAATCCGCCATAACAT	ref_5615_new	117	86	123	100	113	88	105	98	128	74
GCGTTCAGGGAGGCAC	ref_5615_new	21	12	12	13	12	10	16	16	19	8
CCGCAACACTGGGTCT	ref_5615_new	0	0	0	0	0	0	0	0	0	0
CAGACTTGCCCTATGG	ref_5615_new	27	43	37	27	43	21	35	24	39	24
GTTTGGGACGAGCGAG	ref_5615_new	6	15	12	4	10	8	13	5	13	2
TAATCTGTCTGACCTG	ref_5615_new	0	0	0	0	0	0	0	0	0	0
ACTAAGGGTTCCGAAA	ref_5615_new	12	14	5	19	14	11	18	11	17	8
GCTTCTGTGCATTCCG	ref_5615_new	9	7	8	11	12	11	12	9	4	6
TATGTACCTCGCATGG	ref_5615_new	0	0	0	0	0	0	0	0	0	0
GCTAGACATATCGGTC	alt_5615_new	68	100	92	80	107	79	104	66	125	61
CAATTTATCTGCGTAT	ref_5615_new	10	13	6	1	6	7	7	9	9	5
GCATCATACTTAAGAT	ref_5615_new	0	0	0	0	0	0	0	0	0	0
GCCATTGGCTGACTTT	ref_5615_new	0	0	0	0	0	0	0	0	0	0
CACAAGTATTAGAAGC	ref_5615_new	97	114	121	77	141	83	126	79	116	78
TTCTAATGTCGAGTAG	ref_5615_new	0	0	0	0	0	0	0	0	0	0
CATTCGTCGGCGATCC	ref_5615_new	18	16	17	4	7	6	23	12	20	3
TACGTTCGTTTTACTT	ref_5615_new	21	23	16	28	20	14	19	18	38	33
GGCCTCATGAAGAACC	ref_5615_new	38	58	51	41	48	53	70	38	60	34
AACTGTTGTCATGCTG	ref_5615_new	0	0	0	0	0	0	0	0	0	0
GTGGTACATCTGACCT	ref_5615_new	109	130	122	110	142	89	103	90	152	99
GGTCCTGGTCACGGCC	ref_5615_new	7	10	12	6	9	6	11	5	11	8
TTTTGTAGGTGCGTCT	ref_5615_new	20	12	13	14	19	17	15	10	12	15
CCTGTAGTTCTCGCTC	ref_5615_new	13	28	15	4	15	12	21	5	21	11
CTACTTGGACTTGTGT	ref_5615_new	15	9	12	6	13	7	13	11	17	7
GTTTGTATTCGACGGT	ref_5615_new	14	31	24	22	26	17	27	16	36	14
GAACGATTGTAAACTC	ref_5615_new	0	0	0	0	0	0	0	0	0	0
CCTACTAGCCCTTCGC	ref_5615_new	0	0	0	0	0	0	0	0	0	0
ATAGCACTCCGCGTTT	ref_5615_new	12	50	16	14	38	21	51	13	55	18
TGGGTTCTGTACAGGG	ref_5615_new	11	21	7	9	26	9	18	11	14	9
GATTGCCAGCATCATG	ref_5615_new	0	0	0	0	0	0	0	0	0	0
CCTGGTATGGCCTGCA	ref_5615_new	7	7	6	8	13	7	9	7	6	8
ACGCTACGGAAAAGCA	ref_5615_new	20	29	32	19	31	21	23	25	60	14
TCTGCCTCTTAACGAC	ref_5615_new	12	18	13	18	29	15	14	13	20	18
CCCTGCAGGGCGTGCG	ref_5615_new	0	3	1	0	2	0	3	1	1	0
AAACGTATCCGGTTCC	ref_5615_new	36	49	39	37	51	25	46	30	62	33
TACAAGTTTTCGTGGG	ref_5615_new	46	70	50	62	88	48	61	49	67	45
AGTCTGCGGTTAGTGT	ref_5615_new	4	1	1	0	1	2	0	2	2	2
TGGTCCGGGGTGCTAG	ref_5615_new	14	10	7	5	6	12	5	9	19	7
GCCAGTTCCAGTTTTT	ref_5615_new	2	1	0	2	8	2	6	1	6	3
CCGCACTCCTGTTTAT	ref_5615_new	0	0	0	0	0	0	0	0	0	0
ACTGAATCGGTCGAGG	ref_5615_new	78	96	94	99	136	89	116	71	144	79
CATGTTCTTTCGCAGA	ref_5615_new	9	6	9	9	13	8	10	10	5	8
CTGGAGCCTCATTATC	ref_5615_new	3	10	8	1	4	6	11	6	4	3
AGATTTCATTAAATTG	ref_5615_new	8	14	12	10	12	8	14	14	13	5
GGTATCATGAAACTTA	ref_5615_new	23	17	29	20	11	14	20	11	25	8
ATCAACTCAGATCGGC	ref_5615_new	44	46	49	34	71	50	67	31	62	29
TCGGCATTCTGTGTTC	ref_5615_new	16	31	18	25	26	17	25	21	27	16
GGCCTCACCATGGCTG	ref_5615_new	26	36	40	25	32	34	35	28	41	36
ATGTGCTATGTCTCGT	ref_5615_new	0	0	0	0	0	0	0	0	0	0
TGCCATATTGTGGGCA	ref_5615_new	21	34	24	24	28	26	25	15	34	12
CTCCTAGCCACAGACT	ref_5615_new	10	7	7	1	9	5	17	3	10	6
ATGCTTCGACATGCGC	ref_5615_new	33	58	44	45	52	36	68	27	69	33
ACTTCACGCGCGAGTC	ref_5615_new	40	32	25	21	51	17	40	23	40	21
CTAATATATGGTGGGA	ref_5615_new	47	98	70	47	84	50	90	55	128	58
CGGGGTGCTTCCAGTC	ref_5615_new	2	15	10	9	20	13	9	5	14	5
GCGATCATGTTGAGTC	ref_5615_new	4	4	5	0	4	4	9	2	9	6
AGTCCCTATGTTTACC	alt_5615_new	28	48	32	26	45	30	29	29	36	34
CGCGGATAGGAGGGAG	ref_5615_new	0	0	0	0	0	0	0	0	0	0
ATTCTATTTGCTCCGG	ref_5615_new	48	61	52	47	43	42	48	45	71	40
TTTTGTCCTCTAGAAC	ref_5615_new	0	0	0	0	0	0	0	0	0	0
AGTGTGTGATGGGTTC	ref_5615_new	13	7	18	13	11	7	6	18	27	10
GTGCGTCAAGCCATCT	ref_5615_new	21	22	23	19	29	17	36	34	26	20
TATTTCCCTACCTAAT	ref_5615_new	84	74	72	76	103	66	100	82	100	51
TCGGGGCGCAAGTTCC	ref_5615_new	66	91	105	72	88	62	102	90	117	69
GCGATCTAGCTTTCGT	ref_5615_new	24	30	23	26	28	17	26	15	23	21
CAATTTAATCGCGTTC	ref_5615_new	2	3	3	1	4	3	3	2	0	4
CTCATTCTTTTAGGTC	ref_5615_new	0	0	0	0	0	0	0	0	0	0
ATTTGTGATTAAGATG	ref_5615_new	14	25	19	24	14	12	21	17	22	8
TGGACCTCCTCACTTT	ref_5615_new	0	0	0	0	0	0	0	0	0	0
GCTAAGTTTGCATAGT	alt_5615_new	26	36	37	24	38	20	55	27	39	25
ACAGAAGCTCATACCG	ref_5615_new	15	26	23	21	41	16	22	21	41	21
GTCTAGGCTCTCGCTC	ref_5615_new	6	18	7	8	17	4	23	9	14	3
TTTGCGGAATCAATCC	ref_5615_new	26	42	31	24	35	23	34	22	35	14
TAACATTGAGCGCGGT	ref_5615_new	206	287	271	193	292	182	296	230	316	188
ATTGTCATATATTTCG	ref_5615_new	0	0	0	0	0	0	0	0	0	0
TCCCACCATAGTGCTG	alt_5615_new	50	111	59	45	146	55	128	47	129	53
AAGCATTTTCCACACC	ref_5615_new	5	8	4	8	6	4	5	10	8	6
TCACGTCGTTGGGCTA	ref_5615_new	10	15	7	4	9	6	15	9	17	10
TCACGAGGCCACACAT	alt_5615_new	23	33	26	24	26	27	34	20	39	27
TCCGGGATGGAGCCAC	ref_5615_new	24	21	28	25	19	17	21	22	22	23
TCGTGAAGGGTCCTAC	ref_5615_new	26	23	15	13	22	16	18	18	24	12
CTACGATGCTAGAGCA	ref_5615_new	0	0	0	0	0	0	0	0	0	0
ATAGATTATTTAACGG	ref_5615_new	24	29	31	28	38	25	34	26	29	25
ATATTCCCGGTTCTTT	ref_5615_new	31	40	27	20	36	30	34	19	24	17
TTACTACGTGAAGCTT	ref_5615_new	30	31	26	19	36	24	39	22	30	18
TGTTTTGATTCTTACA	ref_5615_new	0	0	0	0	0	0	0	0	0	0
TTTAGCGATCTTTATA	ref_5615_new	82	126	111	92	143	101	141	93	121	75
CGATACTAAATATTCC	ref_5615_new	32	35	24	25	37	21	22	21	30	31
TCTATAGGTTATCCGA	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TATATTCCGCTATTGC	ref_6113_new	322	303	369	321	292	322	327	302	324	268
TTTGTGACACCTACCC	ref_6113_new	59	69	61	59	71	45	75	45	59	44
TCCAAGTTAGGGTCAC	ref_6113_new	19	18	15	19	13	9	16	17	18	16
TCGCTCTAGTGTCAGG	ref_6113_new	33	15	18	19	18	19	16	24	23	16
ATTCGCTACGAATCCT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
ACCAGTCATCTACGTA	ref_6113_new	0	0	0	0	0	2	0	0	0	0
TTGGCTGTGGAGTCAG	alt_6113_new	104	88	99	95	76	91	95	63	92	80
AAAGAAGATTGGATTC	ref_6113_new	23	26	21	28	27	20	22	25	25	21
GGTCCTCGAGCCCGAC	ref_6113_new	93	72	119	86	87	92	72	81	83	73
TCGTTTAGGATTTAGC	ref_6113_new	39	58	70	79	60	50	53	52	84	47
TCTCCAGCTTAAATGT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
CGTATGAGAATCTACG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
ATCTCAGTTAGTACTG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TTATACTAGGCGGAGG	ref_6113_new	22	20	27	18	30	16	10	11	23	18
CAGCCTATTTATAGGA	ref_6113_new	42	153	73	59	133	53	159	47	156	55
ATGGTCTTAAGGTGTC	ref_6113_new	21	20	21	18	22	25	28	19	16	18
CGTAGCAATCTAATCT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TAGCTATCGGCGTTTC	ref_6113_new	8	6	12	6	13	7	10	8	11	4
GGGCGTTAAGATTATG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
GGATTCCTAGATTGAG	ref_6113_new	50	43	78	74	62	58	66	49	61	44
ATAACTGTAGGTGCAT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
AGATTGTAACTTTGTA	ref_6113_new	0	0	0	0	0	0	0	0	0	0
GCTGGATAACAATCCG	ref_6113_new	18	7	20	15	10	19	14	21	19	15
GCTTACTCCAACCTGT	ref_6113_new	11	2	8	11	6	2	7	6	8	3
TCTTCTACATGAGCTC	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TTAACTCCTTCTTGTC	ref_6113_new	0	0	0	0	0	0	0	0	0	0
GGTCGTCATTTTTCAA	ref_6113_new	0	0	0	0	0	0	0	0	0	0
AGACCTTCGTATAGTT	ref_6113_new	21	15	27	20	21	27	25	18	29	22
CCGACGGGTCGCTTTT	ref_6113_new	5	10	18	16	12	9	11	11	6	7
AACCTGGTATATACCG	ref_6113_new	63	64	80	69	75	55	71	72	66	58
ACGGAACTTTGTTCTT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
AGTCCCGTACTAATAG	ref_6113_new	28	27	21	24	24	13	23	20	48	25
TAGGTGCTAGTGACCT	ref_6113_new	71	93	91	71	49	59	74	55	83	59
AAAACAAACTGTGCAA	ref_6113_new	24	13	31	33	20	22	14	18	17	18
GTATGGGAGTTATCGT	ref_6113_new	39	34	39	35	28	30	33	24	55	42
TTGATTGATTAATGAT	ref_6113_new	120	123	159	120	93	143	117	123	121	108
AAGCACAATTGTTCGA	ref_6113_new	40	43	57	31	43	35	35	40	43	50
CTCTGCACTCGTGCAC	ref_6113_new	15	19	16	22	38	14	20	10	29	16
TGTGCCTCAAAGCTCT	ref_6113_new	5	4	8	7	0	2	5	3	4	2
CTACCGCAACCCCAGT	ref_6113_new	43	83	72	54	81	58	67	60	65	49
TTCAGTTTGGCTAAAT	ref_6113_new	42	37	48	39	34	33	41	31	34	17
GGCCTACGTCAGAGGT	ref_6113_new	78	67	87	116	89	80	82	94	69	80
TAACAGCATTCTGTTT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TTCCTCCGGCATAATT	ref_6113_new	7	7	10	8	3	9	3	5	14	5
TGTCGGGTTTAGTCTA	ref_6113_new	7	7	15	6	7	2	9	5	6	3
TTCTAGTGCCCGTTCG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TGACCTATTATCACTA	ref_6113_new	0	0	0	0	0	0	0	0	0	0
CTCCGTTGTGCACTTG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TAAGTCCTTCGGATAG	ref_6113_new	9	6	10	8	1	4	3	3	10	3
TTCTATGCGGCCTGCA	ref_6113_new	28	29	49	32	31	33	34	35	42	26
TGACTGATGTATTACC	ref_6113_new	65	55	70	71	59	37	47	75	47	50
TCGTCGCCTCGTGCCA	ref_6113_new	131	114	145	135	121	132	111	140	111	116
ATTAGCTTAACTTTGT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TTGCAGCTTCCTGCAC	ref_6113_new	5	16	11	12	21	4	13	2	8	5
ACTTCTGCGGGTTTAA	ref_6113_new	30	37	42	37	28	30	26	42	31	17
CATGACAGTCTAACCT	ref_6113_new	27	25	41	42	43	28	31	40	42	30
ATGGTGTTTCCATTTG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TATCACTGGTAAAATG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
AGCTTAAATATCGAAC	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TTCCGGTGTATATCGT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TGTTAAAAAAAGGTCG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
AACTTTAAAATTTCGG	ref_6113_new	2	7	11	9	5	8	13	7	1	6
GCGCTTAGAGCAAAGC	ref_6113_new	0	0	0	0	0	0	0	0	0	0
CGCGTGGGATGAATTT	ref_6113_new	0	0	0	0	0	0	0	0	0	0
CCGTCTTGTAAAGGTT	ref_6113_new	31	30	49	39	41	29	42	39	35	36
TATACACCCACTTCTG	ref_6113_new	4	0	8	8	6	3	3	5	9	7
GTCTGTTAGTCTTGCT	ref_6113_new	2	6	5	6	1	3	4	4	5	7
GAGGAACATTGTCGAT	ref_6113_new	16	26	22	8	13	17	10	12	17	14
CCATTCGCTCTTAAAG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
ACGACTTCAGGAGGAA	ref_6113_new	90	70	94	89	71	111	81	81	75	83
ACTGATTGGGTCTTGG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
AGTGCACAAATATCCG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TAGATGTTTCCGACAG	ref_6113_new	17	8	13	24	17	21	11	22	19	22
GCAATGGTCGGCTATT	ref_6113_new	110	74	117	81	100	81	83	92	76	99
CTATCATTATCCTTCT	ref_6113_new	37	22	32	33	17	37	18	33	29	39
TTCATAGTATCTTCTT	ref_6113_new	16	22	20	22	9	18	24	20	9	14
TTTGATTAGAGCTTGG	ref_6113_new	47	42	57	43	56	43	51	43	47	33
TCGCTCCTTTACATGA	ref_6113_new	21	26	17	16	13	16	26	17	24	14
GATTGTACCGTTTTAT	ref_6113_new	42	41	45	52	42	44	29	60	37	40
CCAGCGCAAAGCATTG	ref_6113_new	10	8	10	9	12	5	12	10	6	14
GAAGCTTACAATTAGG	ref_6113_new	9	2	8	8	7	4	8	7	0	1
ATAGTATGTAACCCGC	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TGTCCGACTCGGAATC	ref_6113_new	3	3	2	4	1	1	4	0	2	3
AATTGGACCTTTCTTA	ref_6113_new	47	28	42	29	30	33	26	47	30	29
TTGTCCCCGCCGTGAG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
AACCCGATCTGGCCTC	ref_6113_new	0	0	0	0	0	0	0	0	0	0
TCACGTGAATTATCAC	ref_6113_new	0	0	0	0	0	0	0	0	0	0
GGAAATTTCGTGTGTT	ref_6113_new	25	26	30	21	33	26	14	30	24	22
GTTCCTTCGTCCTGAT	ref_6113_new	17	6	16	18	15	20	15	9	14	15
TCTTCGTTTCGGCCTC	ref_6113_new	17	19	23	19	17	21	10	15	20	21
GCGCAAATCGTTCACT	ref_6113_new	76	60	91	82	93	66	81	67	108	77
TCCCATTCCCACGTTG	ref_6113_new	0	0	0	0	0	0	0	0	0	0
ATATTTTAGCCGGAGA	ref_6113_new	0	3	4	4	4	5	2	6	3	3
CCTTGCCGGATACGTG	alt_285_reverse	27	32	26	34	31	24	35	22	30	19
ACTGTTTCCACCTCTT	alt_285_reverse	31	49	37	30	31	28	56	47	40	23
GGTAACGTACCCCAGA	alt_285_reverse	11	26	26	8	26	16	24	14	24	8
CATGCATTGTTTAATT	alt_285_reverse	24	21	23	21	20	28	45	15	27	27
AGTACTACTTCGTCGC	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTACGATTAACCC	alt_285_reverse	3	30	4	3	28	6	30	3	26	4
AAGTGTACGATTGATT	alt_285_reverse	24	30	33	17	30	12	18	12	11	18
GACTCTACCGAAGTAG	alt_285_reverse	9	17	12	8	12	4	15	9	16	9
TTTCTGTATCCCTGCG	alt_285_reverse	56	78	81	70	80	57	76	54	81	61
ACCACCCAGTTACGTG	alt_285_reverse	15	16	10	6	17	13	13	11	11	8
CTAAATAGGGCTCATG	ref_285_reverse	6	5	6	5	6	6	6	2	11	4
TATAGCCTTGTAGTGT	alt_285_reverse	117	219	155	111	175	127	224	99	212	117
ACCATCTTCTATCGTG	alt_285_reverse	51	80	68	61	74	57	95	52	92	48
ATGGGGACACAGGACT	alt_285_reverse	98	106	127	108	100	115	126	87	125	99
TTGAGCGTTCCTTTTC	alt_285_reverse	18	18	29	25	26	30	26	10	30	22
GACGCACTAAGATATC	alt_285_reverse	12	22	22	22	24	19	13	14	23	17
TGAGTAAGGATAGTGT	alt_285_reverse	38	54	47	52	63	42	69	31	62	40
GTTAGAAGTTGACGGT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTCGTATACATG	ref_285_reverse	20	29	16	17	21	24	23	20	26	12
CTCTAATTCCCTGCGC	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GGCACCGGGGCTGGTA	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGTTCGTCGTTCT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCGAACCCGACAT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TCTCACTTCCATACGA	alt_285_reverse	3	6	5	9	7	5	14	8	8	3
GGGCTTAAGGAGCGTC	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCCTGACCATCGG	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
CGTAACGACCTCGTGT	alt_285_reverse	86	116	108	105	100	91	122	69	131	90
CATTTGCTATCACCTT	alt_285_reverse	44	47	64	54	63	48	49	41	45	46
TACCACTAATGTTTAC	alt_285_reverse	16	13	20	5	13	10	13	14	9	10
CCTTAATATTTATTAT	alt_285_reverse	7	3	5	6	2	6	6	5	6	12
TAGCCAGTACTGCGAA	alt_285_reverse	102	125	129	116	159	121	172	101	150	89
TCCATTAGCATTTAAT	alt_285_reverse	25	25	16	27	21	19	21	17	24	20
GGCCGCTTAATTCCGA	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
CACCACGTCAACCGCT	alt_285_reverse	0	5	4	2	5	1	0	3	3	4
CTGTATGCACCTCTTA	alt_285_reverse	159	186	179	155	203	139	196	129	210	129
AAGTATTGCTTTCTTG	alt_285_reverse	15	17	18	18	13	14	12	19	16	12
TCGTACTGTGGTAGTA	alt_285_reverse	53	104	70	70	94	59	117	55	95	52
TTTTAGGTTATGATGT	alt_285_reverse	73	75	93	86	74	82	102	69	93	43
CGCCTATGCTTCGACT	alt_285_reverse	51	85	81	61	76	62	103	61	84	59
GGCGGGAAGTACGAAG	alt_285_reverse	4	0	1	0	5	8	7	4	1	9
TGAATACGTCAAATAG	ref_285_reverse	89	138	121	104	173	107	168	70	160	81
GCAAAGCTGAACGGAA	alt_285_reverse	12	13	10	16	8	5	9	11	7	12
TCGGCTTGACCGGTCA	alt_285_reverse	25	43	36	24	35	26	47	29	36	25
TATACTCGCTTGCTCA	alt_285_reverse	6	8	8	10	5	9	11	12	9	10
CCCATGCGTCGGCGTG	alt_285_reverse	17	31	20	24	30	12	26	21	33	8
TAATGTCCTCTGCATA	alt_285_reverse	25	35	42	42	50	37	45	35	35	36
TTACGTAGTGGATATT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TAAACTGAAACCTCAG	alt_285_reverse	149	169	193	164	180	119	191	135	195	141
ATCGGAGGGTTTAGGC	alt_285_reverse	15	10	16	12	17	23	12	2	11	8
ACCCGGCGATCGAAAA	alt_285_reverse	7	11	6	8	14	3	13	6	16	3
CTTGTCTGCGTTGTGC	alt_285_reverse	13	25	23	7	30	13	20	11	24	16
AATTATCGTCGCCTCT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGTCCTTTAGCTT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GTAGAAGGGCCACGCG	alt_285_reverse	20	30	31	21	39	25	23	24	26	10
CTCAACTTGCATCTCG	alt_285_reverse	1	1	4	2	12	3	10	4	3	2
CAATTCTGCTAATCCC	alt_285_reverse	5	8	14	3	12	13	6	10	8	5
GCTCCAAACCCTCAGG	alt_285_reverse	44	56	50	43	51	38	54	46	71	29
TCGAATATCAGCGCTT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGGCGGTGCTCCC	alt_285_reverse	18	48	30	20	63	18	42	21	52	27
TTGTCCAGTCATTAAA	alt_285_reverse	12	32	24	12	25	17	21	9	31	13
GAACATCTGGTTAGGG	alt_285_reverse	52	53	44	45	68	43	63	53	62	30
TCCTCAAAGTCCAGTC	alt_285_reverse	3	2	2	1	2	3	2	2	1	0
TTAACTTCGGAATAAA	alt_285_reverse	41	36	55	39	46	35	57	46	34	43
TAAATTTTCTAGAACA	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GGACGACGAATGGCGC	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GCCACGATTGCAGCTG	alt_285_reverse	18	17	11	19	14	10	16	9	14	8
TATACCGCCAGGCTCT	alt_285_reverse	23	31	31	33	21	22	21	26	36	17
CATACGGGGTTAGCAC	alt_285_reverse	55	55	63	46	62	43	59	48	57	44
GCGGAGGTATTACACT	alt_285_reverse	113	165	138	112	179	110	151	102	155	132
ACACCTCTCTTATCGA	alt_285_reverse	93	112	96	78	124	96	113	78	147	77
CTTTTGTACTGGTGTC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CTACTTTTGCTGTTCG	alt_285_reverse	22	39	29	27	41	16	43	12	51	28
TAATTTGTCAATTTAC	alt_285_reverse	74	98	83	58	96	63	89	54	93	54
TAACGCGACGCAACCG	alt_285_reverse	4	5	5	1	6	6	2	1	10	4
AACTGTGCAACCAAAA	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
AGATAACTGGCCTCCA	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGGGTTTTACCGT	alt_285_reverse	57	80	70	60	101	58	98	77	85	50
TTCGCGTTTGCTAGGC	alt_285_reverse	6	1	4	3	7	5	9	5	7	9
CACAATAAATATTTTT	alt_285_reverse	6	11	5	7	12	9	11	8	12	11
GCGTTTCGAATCGCGC	alt_285_reverse	44	55	50	43	69	52	76	46	79	59
ACCGATTTGCCGTCTG	alt_285_reverse	12	8	8	14	9	7	15	9	7	6
GGTCATTGATCGGTAC	alt_285_reverse	0	1	1	4	1	1	0	3	3	0
GATGTCATATTCAGGG	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
CCCAATTTAGCTGATA	alt_285_reverse	48	53	53	32	52	24	74	40	67	32
GCCTATGTTTTACCTT	alt_285_reverse	0	1	0	3	0	0	1	0	3	0
AGCCCCTCTAAGCCTT	alt_285_reverse	26	40	35	37	33	28	52	29	55	35
TGCTCCGCAGATCCTG	alt_285_reverse	63	98	119	84	121	86	98	80	79	89
TATTAGAGAGTTACGG	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTATCTATCTCGG	alt_285_reverse	197	236	258	218	240	186	271	225	262	186
GTCGCACCTTTCACAC	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCCGACGTATTTG	alt_285_reverse	3	4	6	1	5	3	6	4	5	2
ACATCAGCGTTCGAGG	alt_285_reverse	96	79	82	60	88	51	101	52	99	71
TTTTAACGATGGCGAA	alt_285_reverse	13	23	20	12	26	26	17	32	30	19
GGGGAAATTGGGAATC	alt_285_reverse	40	52	47	40	44	37	61	34	38	35
TACAGTCTGCGGGTGT	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTTAGTGCCAGTG	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
AATTTGCGGCTATTTT	alt_285_reverse	32	49	43	37	36	39	48	34	47	28
TGCATGGACTCGGAAG	alt_285_reverse	7	11	19	8	19	9	16	5	12	11
GCCCTGGCGTGTAAAA	alt_285_reverse	59	78	71	60	94	46	84	51	87	53
GCTCGGATGTCTACTT	alt_285_reverse	1	3	4	0	2	0	4	3	1	1
GTATTTCAATCGGGCC	alt_285_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTTTCGGAAGTTC	alt_285_reverse	11	24	26	19	23	9	16	9	16	14
ATTTGGCCAGTAGCAA	alt_285_reverse	42	84	59	72	80	57	67	50	83	44
GGGCATATTCTTTACA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TGAGATTTACCGGTTT	ref_314_upstream	64	54	87	71	72	85	66	76	62	71
TACCGTGGGGTATTGT	ref_314_upstream	111	111	143	120	105	108	128	112	110	103
CATACTGAGGCCTTCC	ref_314_upstream	40	30	45	32	32	33	35	35	28	23
TCGGTGCTGTTACGAG	ref_314_upstream	58	43	54	46	40	42	56	43	53	34
TACTGCTTGCTGTTAA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
AATGTGCGTGCGGGAT	ref_314_upstream	32	33	33	16	30	35	34	32	31	26
TTACATGTGTGGCTGT	ref_314_upstream	18	15	38	16	7	24	9	26	21	32
TCATCACCATAAAGAC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTAGCGGTAACTT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CTGCCGGTAGAGTCCT	ref_314_upstream	50	68	63	57	49	61	60	49	60	66
TCATATTACATTGCTA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CCATATACTCGGAAAC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CCATGTATACCAGCGT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTAATCATAGGC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GATACGAAGTAAACGC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GCAATGCTAGCAGGTT	ref_314_upstream	21	17	28	22	24	19	21	15	29	22
GCTTCTTTTCTCTAAC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CTAGCTTCGACAACCG	ref_314_upstream	66	65	108	74	76	86	68	81	79	63
ACTTTACTGCACATTC	ref_314_upstream	4	2	4	5	3	5	7	4	2	0
CTCACGCGGTAACGCG	ref_314_upstream	67	59	80	78	73	46	59	70	73	63
TTTCAGGGCGAAAAAC	ref_314_upstream	14	9	27	11	14	22	9	14	19	11
GTTTAAAGAGTGGAGT	ref_314_upstream	5	11	14	4	4	7	11	9	8	5
AGGCTAAGGGCTGCAA	ref_314_upstream	2	2	6	3	4	1	4	3	1	3
CTCTAAGATTGGCCAG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCGGCAGAGAGCT	ref_314_upstream	27	23	29	27	20	34	23	28	22	26
ATTTTTCATGGTAACG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TATACTGCCCGGAGTT	ref_314_upstream	4	6	9	6	9	7	10	3	4	3
CTGGCCCTCCGTAGTC	ref_314_upstream	117	158	127	92	134	114	150	123	163	100
AACTTTGTGGTCTTTC	ref_314_upstream	38	23	29	21	20	25	26	18	21	18
CTGATCTAGGTAAAAT	ref_314_upstream	28	21	39	20	28	24	31	29	35	21
CATAGCTTCACGTGTT	ref_314_upstream	29	31	37	29	36	30	32	33	48	29
GTAATAAATTGAGAGA	ref_314_upstream	13	6	26	12	11	9	10	6	17	7
TCGTTACCTTGCCCCA	ref_314_upstream	35	37	54	40	40	37	33	46	40	40
GTTCGAAACGATCCCC	ref_314_upstream	41	23	48	29	22	29	21	28	36	30
CATTGTGTGCTGCAAA	ref_314_upstream	2	7	2	4	4	5	3	3	3	1
TTTTTTTGGGGTGGCT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CAATCAACGCATTAGT	ref_314_upstream	15	10	11	14	15	14	15	13	7	13
ATTGTTTCTCTCGCAG	ref_314_upstream	20	19	23	27	24	17	18	20	23	14
TCTGATGACTTAATGC	ref_314_upstream	90	80	107	103	75	83	93	46	98	76
GGATAAGTTTTGTCTC	ref_314_upstream	6	5	10	4	11	3	3	6	3	5
TGCACTTTAGCACTCC	ref_314_upstream	12	11	20	10	9	10	6	10	7	8
TGTAACCTACGTCTAA	ref_314_upstream	45	63	77	62	80	39	56	42	68	44
GTACACCAGACTCTTC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTGCCACACCACC	ref_314_upstream	26	11	29	25	18	27	16	34	24	19
ACTCCTGGTTGTCGTA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
ATTACTTGAAGCTTCA	ref_314_upstream	25	37	40	32	33	39	29	34	39	35
GGTTCTAGTATATAGT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GTTACATTAGCATTAT	ref_314_upstream	42	27	42	35	41	42	38	34	45	46
CGCGTGTGACCCAGTT	ref_314_upstream	11	5	14	10	15	13	6	5	14	4
CCACATAACTATCCGA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
ACATCCGTTTGTGGCG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GCATTGTCCAGGACCT	ref_314_upstream	79	63	70	57	56	68	66	54	65	57
CAACTCGTATATAAAT	ref_314_upstream	32	27	46	39	36	28	35	33	20	27
CGGTTTAAGTGCGAGG	ref_314_upstream	20	17	20	25	26	20	26	21	21	25
TGCGCATCATCTAGAG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CATACCAAGGTAGACA	ref_314_upstream	14	10	14	15	4	10	7	7	7	14
CTAATGTTGTGGCCTT	ref_314_upstream	28	29	29	34	22	29	20	27	27	19
TTATAAACGTCCTTTG	ref_314_upstream	0	1	0	0	0	0	1	0	0	0
CAACGATATTCGCACG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTTGGCCATTTTA	ref_314_upstream	10	7	7	12	7	9	8	5	9	7
TTCCTCTGTAGCCAGC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CGATGTAAGTTCTCCA	ref_314_upstream	14	10	8	7	4	13	7	8	9	6
TCCGCACGCACGATCA	ref_314_upstream	28	21	29	9	20	12	19	22	15	8
TTTGATGCCTCTTATG	ref_314_upstream	27	8	13	15	15	17	18	14	18	14
CTTTTACTTTGAGAGT	ref_314_upstream	7	5	6	5	8	12	2	10	19	8
TGAAGTTAAAACGCGG	ref_314_upstream	9	4	13	20	5	13	12	10	8	4
TCGCAACATACACAGG	ref_314_upstream	28	42	41	30	28	25	23	20	34	24
CAGTCTTTGTAAATTA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTGTGGGCCATAG	ref_314_upstream	46	43	47	39	55	43	48	45	55	52
GAGAATGTCAGATGTG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TCAATAAGTCGGTCTT	ref_314_upstream	44	56	42	43	40	50	47	44	40	52
ATCGTCGAGTTTTGCG	ref_314_upstream	0	3	7	4	5	3	5	2	4	3
GCATATTTTTCAAATT	ref_314_upstream	23	18	23	19	11	19	12	24	24	14
CCATTGACCAGTACGC	ref_314_upstream	6	2	0	2	3	0	0	0	0	0
CAACCAACTGCATCGG	ref_314_upstream	2	6	2	3	10	4	11	2	18	3
ACTGCTTTCTGCCTTG	ref_314_upstream	25	37	32	33	30	35	44	25	37	35
GCACGCTGGATGGATC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCTCACCGCATA	ref_314_upstream	59	58	63	66	55	52	37	57	52	43
GAGTGACTAAGTAACA	ref_314_upstream	42	42	50	38	33	33	28	35	32	32
TTGCGTATAATTAGAG	ref_314_upstream	18	16	14	15	14	15	16	16	20	17
TATACCGGTCCAGAGG	ref_314_upstream	16	18	23	18	16	18	16	24	23	21
GCGTTCGCTTTTGTAT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCGCCAGGTCTGA	ref_314_upstream	28	39	42	46	37	41	31	35	57	31
TTCCGGGCAACTCTAA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCAGTCGGCGTCC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGCCCATCTTTAA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCGACTTCACTCA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
ACTGAGCCGTTGATAT	ref_314_upstream	20	15	27	15	29	19	39	28	30	24
AAACGTGGCGTGAAGG	ref_314_upstream	82	69	105	84	61	74	65	81	71	85
CGCTGTTTTGGCCGGC	ref_314_upstream	16	26	31	18	25	18	26	21	27	13
CTTAATAGTATCTTGG	ref_314_upstream	22	21	25	21	16	12	27	12	24	19
TAGAATATCAAGTCGT	ref_314_upstream	26	24	45	32	22	26	28	26	30	29
TGTCGATTGCTAATTG	ref_314_upstream	78	89	80	75	92	68	98	69	97	64
CTGGGGAATGAGGCGG	ref_314_upstream	29	28	42	24	21	25	25	16	35	27
AAGCTTCGGGAACTCT	ref_314_upstream	27	19	28	21	27	24	33	29	15	20
ACTGTATGCACCAACT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTTTGGGGTGGC	ref_314_upstream	13	11	16	11	11	6	6	5	12	8
CCATATTCCCACTGCT	ref_314_upstream	13	3	10	6	4	9	9	6	8	9
GTTAAGCTCACTTTAG	ref_314_upstream	6	8	16	5	6	10	9	10	12	8
CAGCTCTCACGAATAT	ref_314_upstream	55	45	62	54	55	74	56	60	70	59
AATTTCATTAAGCTTT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TTAAAGTTTTCGATTG	ref_314_upstream	171	160	195	184	166	225	183	168	191	161
AGAACAGACAAGGAGC	ref_314_upstream	17	19	12	17	9	14	19	11	12	16
GCGTAATTCTTGAATA	ref_314_upstream	23	29	39	32	27	24	22	24	24	29
GAGGCCCAGGATTACT	ref_314_upstream	24	16	24	35	16	22	22	25	15	14
TGCGCAGGTTTTTTGG	ref_314_upstream	21	24	38	25	22	18	26	22	28	23
GAGCGTGTCGCGTCGC	ref_314_upstream	17	19	20	23	21	21	14	23	20	15
TTTTCTCGCTCATCGG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTATTATCTGTGA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TAAATCGTGCCAGTTG	ref_314_upstream	7	4	5	7	6	4	10	6	7	3
TCACATACGGACGCCA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCTGTGATATAC	ref_314_upstream	23	26	27	25	28	24	28	25	21	28
TATAAATGTAGTCGTC	ref_314_upstream	3	2	3	0	2	5	1	2	2	3
CATGCACCTTCCCTTC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCGAGTGGTGAAA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTTCAGTAAGAAA	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCCGTAATCCTCA	ref_314_upstream	29	20	29	18	26	21	21	13	30	18
TGGCGATACATCCCAG	ref_314_upstream	17	7	14	12	6	13	5	11	15	7
GGCTGCAATTGCTTTG	ref_314_upstream	8	9	8	10	7	9	7	5	4	5
TTAGCCCTTCTCGGCA	ref_314_upstream	2	3	12	4	6	2	4	2	8	2
TAGGTCGATGGCCAAC	ref_314_upstream	106	102	120	110	93	104	119	101	119	87
ATTTTGCCTATCGAAA	ref_314_upstream	101	133	133	113	118	116	151	92	136	107
TCAAAATGCTTCCGTG	ref_314_upstream	27	34	25	28	34	17	24	24	32	22
ACACCGGGGGTACGAT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGTGGTGACTTCA	ref_314_upstream	14	12	27	21	17	9	10	15	26	21
CCTAACATTGGGCTAT	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCCCCTTGATTCC	ref_314_upstream	7	17	14	15	22	8	18	14	34	7
GCCAGATCCAGCACAC	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
ATATTTCGAGGCAATC	ref_314_upstream	56	70	85	78	66	81	60	97	75	66
GTGCCAATCGAGATAC	ref_314_upstream	18	20	24	11	15	30	16	17	23	19
TTCCTACCGATCTAAC	ref_314_upstream	13	6	16	16	15	10	8	18	15	4
AATTTGTTTTGCGTGA	ref_314_upstream	2	0	0	0	1	0	1	0	1	1
TTACACGAGTGTACTG	ref_314_upstream	26	24	26	26	24	23	35	19	30	22
CAGGGGCCAATGTGCG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTTACAAGCCTTG	ref_314_upstream	6	5	7	4	5	3	3	2	6	2
TGCCGTGGCCTGGGCA	ref_314_upstream	11	5	10	10	10	9	10	5	15	15
TGGGTTGAGCTATGAA	ref_314_upstream	33	45	66	45	57	37	39	32	44	50
TCAGGCAACCTGATCG	ref_314_upstream	0	0	0	0	0	0	0	0	0	0
CGGGACAGTCATCTTA	ref_314_upstream	15	15	13	13	15	11	12	18	10	4
GAACCAATGCAATAAA	ref_314_upstream	31	29	46	35	37	27	26	28	44	22
TACTCGACTACTTTGG	ref_2027_reverse	144	208	189	151	186	125	238	109	221	117
ACTAGCTTCTATGTCC	ref_2027_reverse	36	50	44	33	61	21	57	28	77	27
AACTCCCCGCCCGCTT	ref_2027_reverse	1	4	0	0	7	1	4	0	10	0
TTTAGGATTGGAATAC	ref_2027_reverse	14	19	24	12	20	22	16	13	32	20
TTCATATCATTGTGCT	ref_2027_reverse	15	15	7	4	10	10	11	9	13	10
CTACATCGTACATGTG	ref_2027_reverse	22	76	22	16	104	11	92	18	96	24
GAAGTCTGATTTTTTG	ref_2027_reverse	11	13	20	23	20	12	32	21	26	14
AAACATTCGATACTCT	ref_2027_reverse	47	68	61	30	55	42	65	37	64	41
ACCAGCTATCGCCTTT	ref_2027_reverse	17	34	29	21	34	14	43	22	38	22
TAATGGCGCTATTGGG	ref_2027_reverse	8	8	5	3	7	13	7	2	16	11
TAATTCATGGGGGGGC	ref_2027_reverse	18	20	17	19	13	13	25	8	22	15
GTTTTTTCCCAGATGA	ref_2027_reverse	83	109	127	102	134	100	132	82	133	105
CGGCGTGGTTATGCGT	ref_2027_reverse	92	112	93	67	128	80	132	81	129	75
TTAAATAACCGGAGGG	ref_2027_reverse	22	34	33	18	23	16	27	21	21	17
AAGGAATTACCTCTAT	ref_2027_reverse	12	31	11	11	27	15	20	21	27	18
AGCCGGTGTAATTACG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTACCTGCGCGCG	ref_2027_reverse	20	23	26	27	39	15	35	25	30	17
AATTAGCCTTAGGCCT	ref_2027_reverse	31	29	40	29	40	40	49	42	48	32
TTCGTCTTGAGGAGAC	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TGGAACTCACATGCTT	alt_2027_reverse	68	122	70	85	122	76	146	65	96	66
TGGAACTCACATGATT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGTCCGTCATTCG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGCACTATCATCG	ref_2027_reverse	32	55	52	43	59	46	66	43	58	37
TTCAAGGAAGCATTAA	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGACTCAAGGAG	ref_2027_reverse	18	25	22	12	24	20	29	20	25	12
TTTAATCCCACAATTG	ref_2027_reverse	274	334	298	276	354	243	412	258	382	229
ATCTAGGTTTAGAGTC	ref_2027_reverse	21	34	22	21	45	18	41	13	41	9
ATGAAAGGTTTGGTCT	ref_2027_reverse	93	141	109	77	129	103	122	66	143	76
GGCGCATTTTTCTCTG	alt_2027_reverse	76	94	113	86	86	93	100	83	122	79
ACGTTATGTACGCCGG	ref_2027_reverse	0	1	0	1	4	0	3	0	2	0
AGGGTAGGCGGGTTTT	ref_2027_reverse	36	44	42	31	51	28	45	35	49	33
GACTCCTATCTCGCGG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGGTACTCTCTTG	ref_2027_reverse	78	88	82	75	108	84	92	77	133	85
TCCCTTGTTTAAAGCC	alt_2027_reverse	10	13	13	7	25	9	10	17	11	10
AATTTATAGTGTTCAT	alt_2027_reverse	51	63	57	51	68	57	63	43	68	50
TCTGGTAAAAACTGCC	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAGACTATACGCA	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTCCCCGGCTCCC	ref_2027_reverse	0	10	1	4	6	3	7	1	7	1
CTAGGTCAAGAGCGTT	ref_2027_reverse	7	7	4	5	10	2	10	2	16	5
ACTAAGTTTGCCAGAT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
CTGCACTTTCTAACTT	ref_2027_reverse	3	7	8	2	6	4	11	4	10	2
TTTTGTCGGCATAGAC	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTAATTGGTCAAC	ref_2027_reverse	11	44	14	17	30	17	24	15	42	14
GCATTCTATCTCTTCG	ref_2027_reverse	14	40	29	38	36	22	21	19	34	29
TACTGAATCTTGCCGT	ref_2027_reverse	4	0	0	2	2	1	0	0	0	0
GCTGTTAGATAGATAT	ref_2027_reverse	1	1	2	0	0	1	0	1	0	1
AGCGTAATTGTTGAAA	ref_2027_reverse	8	16	12	6	16	8	18	12	25	8
TAGCTTTGGGACCGAA	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCAACCATTTCGC	ref_2027_reverse	67	120	83	65	117	68	117	57	139	65
ACGTACCACGGTTGTA	ref_2027_reverse	6	5	3	1	6	4	2	3	4	1
CGACACTCGTGAGTCG	ref_2027_reverse	2	4	3	1	5	4	2	0	4	2
ACTAAAGCCGGCGGCA	ref_2027_reverse	99	95	79	86	117	75	109	85	102	88
TGATAAAGCATCAGTT	ref_2027_reverse	8	9	4	8	13	10	10	12	16	19
GACTAGGAGGGTAAGT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
GCGCAGCCCACACTCT	ref_2027_reverse	10	21	12	17	27	13	24	11	33	6
TTGGGCTCATCTTGTT	ref_2027_reverse	67	100	64	58	100	86	111	67	120	62
GGTGTTTCCTCATGTA	ref_2027_reverse	56	99	76	71	97	72	82	58	85	53
TTCTGCTCGAGTATCG	ref_2027_reverse	6	8	10	3	9	3	9	5	10	5
CAAGTAGTACATGCAG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGCCGCTACGTAA	ref_2027_reverse	18	31	21	24	32	17	32	19	34	22
ATCTTTACTGCATACC	alt_2027_reverse	34	42	32	44	50	40	46	48	46	35
TCTCACTAATTTTTTG	ref_2027_reverse	1	1	1	1	0	1	1	0	0	1
CTTGTCATGCCCTGGC	ref_2027_reverse	40	65	47	47	66	43	75	39	72	47
AGAGGAGGTTCTCGGT	ref_2027_reverse	43	40	44	38	41	35	64	40	56	37
CATACTTCGAACAACG	ref_2027_reverse	90	133	109	96	155	71	119	87	117	71
TTTTCCGGTGTTACGC	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGGCGGTCGTGC	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TACTGTTGCGACTCTT	ref_2027_reverse	28	34	37	21	28	23	37	17	31	17
TCTTGAGATACCTCAC	ref_2027_reverse	9	6	10	14	5	7	8	8	8	7
ATGGATCTGGTTGGTA	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCCTCAAATCGT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TTGATAGCATGTTCTA	ref_2027_reverse	39	54	57	49	63	35	71	35	65	26
TCCCTCGAAAGGCGTT	ref_2027_reverse	11	25	19	17	17	11	33	10	36	12
CGCGCATCCTAGCAAA	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
GATAATCCTCTGCCGT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
CCGGACGAATTTAGTG	ref_2027_reverse	6	13	11	5	12	10	16	6	16	2
CTGTCACTGTTCGTGA	alt_2027_reverse	151	243	178	129	268	159	256	158	286	151
ACACCTACGGCACCGC	ref_2027_reverse	9	28	13	10	24	18	19	17	24	14
GTAACCATGGTGGCCA	ref_2027_reverse	12	14	15	14	36	11	14	19	21	20
TTGTATTGTCTTACAG	ref_2027_reverse	23	20	24	13	19	13	41	12	28	11
GAGCCGTATTGTCCTC	ref_2027_reverse	2	3	2	8	4	5	10	5	3	7
TCCTTAAACATAGCGG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
AAAACTGTATACGTGT	ref_2027_reverse	13	13	14	13	11	13	18	8	10	16
CTAATACTTAGGCCGT	ref_2027_reverse	39	55	45	26	45	23	44	31	40	18
GGCCATCCGACCACGG	ref_2027_reverse	15	16	24	16	30	27	31	23	35	15
ATCGCTTGATCATCTC	ref_2027_reverse	7	4	13	14	13	3	18	9	18	9
ACGTGGTATGTGTGCC	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TATGAGTAAAGGATCG	ref_2027_reverse	255	378	282	234	341	267	427	220	387	237
GGTCATGTTTCATCTA	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTTATCTGATAGG	ref_2027_reverse	14	13	7	9	21	12	21	11	18	7
ATTAACCCCCGCAGAA	ref_2027_reverse	86	122	75	103	116	100	143	70	113	90
GCGCTTTAGTTTGCCT	ref_2027_reverse	41	40	37	21	33	30	49	42	42	32
ATCAGTTTCATGCATA	ref_2027_reverse	17	31	14	11	23	15	20	11	33	10
AAACCGAATTATCCAG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TGATACTGGCTTTCGT	ref_2027_reverse	4	13	4	8	10	8	9	8	7	5
CGGGTATCTGCTCAGT	ref_2027_reverse	38	77	25	34	68	34	58	26	56	35
GGTCGGCGTACTGGTA	ref_2027_reverse	24	55	48	38	42	33	57	34	59	43
TTATTAGGAGCAGTGT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCGCGGCGAGAGC	ref_2027_reverse	1	1	0	0	0	0	1	0	2	0
GAGGCCCTTGCTAGTG	ref_2027_reverse	60	98	95	70	84	56	116	65	98	61
TGTTATCCGTATTCTC	ref_2027_reverse	27	18	25	16	24	18	25	14	38	18
ATGCATCAGTATCAAA	ref_2027_reverse	32	37	21	34	44	23	30	25	48	18
TCACGTTAGCGTACCG	ref_2027_reverse	29	33	41	31	65	38	49	25	67	30
CAAACCAATTACCTTT	ref_2027_reverse	12	21	15	22	21	10	22	9	17	13
TCAGGTATTAGGAACT	ref_2027_reverse	34	42	35	19	42	38	40	23	43	22
GTATTTTGACGGTAGC	ref_2027_reverse	2	1	2	0	0	0	2	1	1	1
TTATTATCTATTTGGT	ref_2027_reverse	45	50	52	40	36	33	42	9	66	32
CATAGTTAGTTCGTAC	ref_2027_reverse	44	93	68	43	84	52	105	36	105	33
TTAGTGTTCAATAGTG	ref_2027_reverse	5	2	2	2	7	3	3	2	3	3
TAGCGGGAACACTCTT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTGCATTCCGCTC	ref_2027_reverse	6	29	15	12	13	17	26	8	24	7
CGGTGTGTGCGCCGAT	ref_2027_reverse	12	24	20	5	21	16	25	16	24	6
GCCGGTGTTTACTCGC	ref_2027_reverse	0	1	4	0	1	1	2	1	3	2
TATCTCGCCCCCAGAT	ref_2027_reverse	27	18	31	30	33	11	32	23	38	28
AATCAACGCTGGCTTA	ref_2027_reverse	8	52	9	5	80	14	84	6	70	5
TTGCTTTTTGGATTAT	ref_2027_reverse	14	11	11	6	9	7	3	4	17	8
CACGCTGTCGAAACCC	ref_2027_reverse	33	28	26	19	27	25	36	24	27	22
ATGGAATGCATGATTC	ref_2027_reverse	71	103	72	68	80	53	87	30	80	64
CAGCAACGCTAGCACT	ref_2027_reverse	16	43	22	25	46	14	45	27	40	11
GTCGTGACTCGCTGCC	ref_2027_reverse	22	38	18	18	36	24	35	21	52	13
CCTATGATCTTGTTAA	ref_2027_reverse	164	192	188	155	191	147	241	158	246	151
GTCATCGTCTGTGATG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
CACTTAAAGAGTACCG	ref_2027_reverse	20	26	19	14	26	16	30	15	38	14
CGCTCAACAGTGTGCC	ref_2027_reverse	1	14	6	7	30	2	15	3	15	3
ATAGGCCTCAATAGTG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TCGGAGGGTTCTTTAA	ref_2027_reverse	37	64	47	32	67	47	85	37	77	45
TTTTTTGGCGGTCGTG	alt_2027_reverse	215	305	271	230	306	240	365	207	348	198
ACCCGATATCCTGGGA	ref_2027_reverse	49	52	60	37	65	39	42	38	54	40
TCAAAGGTCAATTTAT	ref_2027_reverse	75	155	120	69	128	84	124	79	148	78
TACTGTCGGTCTCTGT	ref_2027_reverse	9	15	18	6	12	7	13	7	12	7
GGAACCCGGTTAAGCA	ref_2027_reverse	54	70	76	56	60	50	68	38	64	38
CCTGGCACGTTTTTTA	ref_2027_reverse	10	9	12	6	8	8	10	4	15	8
GAAGACCGTTGAGGCG	ref_2027_reverse	18	24	25	21	26	19	27	19	28	16
ATTCTGCCTTCGTTTT	ref_2027_reverse	0	0	0	0	0	0	0	1	0	0
CAGATGTCCTGTGTAG	ref_2027_reverse	76	114	71	61	104	50	108	58	105	58
GACTTTTAATCTCGTT	ref_2027_reverse	2	9	5	6	9	7	8	10	4	4
CCTAACACCCATGCTA	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
CATACTCTATTCTTTC	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
CACATCGATAGGTTCG	ref_2027_reverse	31	23	31	25	48	20	51	22	53	19
CCTCTTGAATGTCAAT	ref_2027_reverse	41	77	34	39	83	28	72	30	85	30
TGGGCAACGGCTTGGT	ref_2027_reverse	9	21	32	13	33	18	27	14	33	15
TTTTTTTGGCGGTCGT	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTACCGCGGGCAG	ref_2027_reverse	0	0	0	0	0	0	0	0	0	0
TAAATTCTCACGTGGG	alt_2027_reverse	47	50	68	62	56	64	68	51	57	67
AGATTAACATTCTGCA	ref_2027_reverse	15	19	25	8	30	11	27	5	14	12
CAACTAACCGGGCGGT	ref_2027_reverse	31	48	28	33	40	45	43	26	25	25
CGATCGCTTTCACTGG	ref_2027_reverse	80	103	67	56	85	60	106	57	88	45
TTGTGTCTCGATTAAA	ref_2027_reverse	128	224	152	122	220	108	205	98	200	105
GTGCGTCGTTTTAGTT	ref_2027_reverse	6	19	9	8	21	4	11	4	6	5
TGAATTATCCCTCTTT	ref_2027_reverse	28	27	29	31	22	22	29	18	28	26
CTTAGCGCCGCGTGCA	ref_2027_reverse	25	62	44	38	56	23	66	31	74	39
CTTAGGTGTATACGCA	ref_2027_reverse	4	8	7	3	12	3	9	4	13	5
ACCTTCGATCGTCTGT	ref_2027_reverse	22	27	16	22	39	27	36	22	47	24
GATCAGACACGCTGAC	ref_2027_reverse	19	17	18	19	18	15	21	13	21	17
GTTACTTATTAGCTCT	ref_2027_reverse	5	11	3	5	10	4	5	3	4	3
TCTCTAGAACAGTTGA	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
GACCAAGCCACATTGT	ref_2027_reverse	20	21	24	23	29	10	33	18	17	27
CCCCGTACAGATTCTG	ref_2027_reverse	26	33	47	50	35	31	50	27	45	34
GTCAGAGTATAGGTGG	ref_2605_reverse	57	79	70	48	52	57	61	49	70	50
GCGGACTGGACAGGAC	ref_2605_reverse	9	8	9	7	14	12	9	5	10	9
GCGACTGTTTTCTTAC	ref_2605_reverse	16	13	21	11	12	9	13	5	15	11
GTCTTGTTTTGCGGAT	ref_2605_reverse	24	28	22	13	15	32	17	15	16	11
CATTTAGATCGTAGTC	ref_2605_reverse	75	77	93	61	68	52	80	60	116	78
GGCTACTGTCAGATCT	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GGCACTTATATTGTGG	ref_2605_reverse	54	67	68	76	57	64	79	81	52	55
TTCCTACGAACTTGTC	ref_2605_reverse	5	10	7	7	9	10	11	10	7	8
TGGGGACCAAGAACGA	ref_2605_reverse	76	75	69	62	83	65	60	64	74	47
GTCTTCATTCGCTTTG	ref_2605_reverse	45	55	45	47	45	37	42	37	44	30
GACAGCCCCACAGTTG	ref_2605_reverse	10	17	11	10	14	9	21	8	10	6
TATATCAGCCCTGCCC	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTTTGCGTGCTAC	ref_2605_reverse	7	20	17	18	18	14	24	12	24	10
GACCCAATTTAAAGGC	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GGACCGTTTTTTTAGT	ref_2605_reverse	45	46	60	39	40	43	60	36	47	37
TATCATGCCACTACGG	ref_2605_reverse	113	104	139	131	119	108	138	104	135	98
GCTTTGGTTAATAAAC	ref_2605_reverse	14	13	16	13	21	11	12	10	4	16
AATCCGTTTGTCAAAT	ref_2605_reverse	31	50	38	36	30	26	42	37	41	36
TTGTGGCCATACCAAC	ref_2605_reverse	2	1	3	4	1	1	2	2	2	0
TGTCTGCTTCGTGCTC	ref_2605_reverse	28	35	62	41	51	42	29	31	49	45
GTCAGTCCTCCCCATT	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGGGTTTATCCCT	ref_2605_reverse	11	21	14	11	14	20	15	16	20	13
CCTGCTCTACGGTTAA	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GCAGGTTAACGCGGTT	ref_2605_reverse	29	28	28	29	31	24	42	22	38	27
TAGTATACTACGTGAT	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
AGATCCCGTGTAAGCT	ref_2605_reverse	12	12	11	7	4	10	17	14	11	10
TTGTTATGCCCCTTAG	ref_2605_reverse	12	13	8	16	11	13	9	8	12	16
CTGGCTCGATGCTACG	ref_2605_reverse	23	25	30	33	19	29	31	17	38	35
GCGTCCGCACCTCCAG	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAACGGCGATGCT	ref_2605_reverse	35	26	36	35	40	34	22	24	29	32
TGTGCATAGTGATCTT	ref_2605_reverse	51	64	74	39	64	43	58	60	46	53
CTGCGATCCGAGATAA	ref_2605_reverse	23	22	31	21	24	24	24	22	29	20
CGCTTCCTACGTGAGC	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GGCACTGGCCCTATTT	ref_2605_reverse	24	42	37	20	40	22	37	24	32	25
TTAGAGCTTGAGTAAC	ref_2605_reverse	21	44	55	33	48	34	51	39	49	32
GCTTACTTCATACTTT	ref_2605_reverse	4	9	13	7	6	7	7	7	7	5
GGTTTCAGGCGAACCT	ref_2605_reverse	52	60	63	53	63	39	55	42	55	61
CGCTACTCGATGCGCC	alt_2605_reverse	11	17	6	7	7	2	15	10	13	10
CATTAGAGGATTCCCG	ref_2605_reverse	26	35	34	17	33	13	22	28	30	30
AAACAAATTGGGCTAG	ref_2605_reverse	19	20	28	32	17	18	14	20	19	22
CACAGGTGCGAACCGA	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCATCAGTCAGAT	ref_2605_reverse	6	20	16	21	12	16	21	16	10	12
TCTCCTAGTTTTATGG	ref_2605_reverse	8	4	6	8	9	1	10	8	9	3
ATGTCAATCACTTACA	ref_2605_reverse	17	21	28	21	26	20	20	15	22	20
GTCTAACGTCCGTTGC	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCCAGCTCGTCTT	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTTTTCGAGACTT	ref_2605_reverse	33	39	39	28	32	27	47	34	47	27
TTTTTCGTCGCCGGGC	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAAGACTGTGGGT	ref_2605_reverse	363	373	475	355	387	370	452	330	441	374
CCGTGACGTATTCCCC	alt_2605_reverse	3	13	6	7	19	6	17	2	25	13
ATGGCAGGGGTGTCGA	ref_2605_reverse	37	41	39	36	36	15	52	20	53	23
AAGACTTTGTAGTCTG	ref_2605_reverse	70	65	75	59	70	83	90	51	69	47
CTGTAATTTCCTTATT	ref_2605_reverse	20	22	39	31	32	29	32	32	36	19
CCGGCGCCATATCGAA	ref_2605_reverse	23	49	42	40	35	42	52	41	55	29
GTTATTAATTCACTCT	ref_2605_reverse	215	198	269	254	186	236	227	220	242	202
ACGGACTGGAATTACT	ref_2605_reverse	4	2	2	4	1	2	3	1	5	3
CGTATAACACCTTTAA	ref_2605_reverse	90	74	99	84	103	95	89	82	91	95
GCTTGAAGTGTCTCAT	ref_2605_reverse	7	13	18	12	14	13	13	6	12	6
TGCGCCCCGTTGATTG	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
TAAACTCCGCGCTGAC	ref_2605_reverse	12	20	7	6	17	9	20	9	15	3
GTACAATCCTGTAATT	alt_2605_reverse	45	42	68	53	44	59	48	44	42	49
GTATTCTCACTCGTGT	ref_2605_reverse	38	48	53	37	48	30	36	29	45	34
GTTATAGCTTGTGTTT	ref_2605_reverse	12	27	4	10	18	8	7	10	19	7
AATGAACCCGCAACAA	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GTATTTTGATCCTGAT	ref_2605_reverse	52	40	50	47	41	30	54	40	39	56
CTTCTTCTCGAGCATG	ref_2605_reverse	11	21	25	21	30	17	16	17	25	19
GCCTTCAATCGGCTCA	ref_2605_reverse	65	73	64	48	82	50	77	53	97	43
AGCTCTTCGTCCGGTA	ref_2605_reverse	36	51	41	39	46	39	46	30	45	40
AGATACGACTTTTTTT	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTCCATACGCCAG	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
CCACATTGACTCACCG	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
CGCACGACTCCTAAGC	ref_2605_reverse	19	56	51	30	67	42	61	40	37	44
GAAGTGGCCATCTTCG	ref_2605_reverse	31	14	25	21	19	19	16	21	16	24
CGCTTATCCTATCTCT	ref_2605_reverse	4	7	6	5	13	6	14	9	13	4
TGGCCATACAAGTCGA	ref_2605_reverse	12	22	18	12	27	20	21	16	27	14
ATAGCCATGATTTCCG	ref_2605_reverse	73	63	66	54	59	58	69	44	97	52
ATATAGTTCGGGCTTC	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGAGCCTGATGCC	ref_2605_reverse	178	187	212	192	208	142	224	134	228	188
CCGTTTCAGATCAGCG	ref_2605_reverse	26	72	37	38	66	21	72	33	52	31
CAATTACGGTTTCTTC	ref_2605_reverse	20	15	26	22	18	19	28	26	19	21
GAGTGCATGTTAAGTG	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCGCGGCCATTGG	ref_2605_reverse	16	19	25	13	28	15	17	13	13	12
CTCCAGCCGTTCAGTT	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
GCGAGTTTACGCGCCC	ref_2605_reverse	185	157	225	179	172	178	169	191	211	169
GAAATTCAATATTTGT	ref_2605_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGACGAAAGGGCT	ref_2605_reverse	23	19	28	17	6	14	11	15	12	14
TGATATGGGGACACTT	ref_2605_reverse	53	31	53	43	42	40	42	31	60	54
GACTGTCATTACATGG	ref_2605_reverse	15	24	13	14	18	16	22	18	17	20
GCGCAGGTCGACCACC	ref_2605_reverse	35	43	52	44	52	33	40	33	46	38
TGGTAGTATAATCGAC	alt_2605_reverse	67	58	70	57	62	58	63	58	77	49
AGCATCGTTCCCTTCG	ref_2605_reverse	30	40	40	35	30	30	61	46	35	21
AAACCGTTCAACGGGT	ref_2605_reverse	19	22	18	14	21	10	16	14	27	11
TTATAACGAAACATAT	ref_2605_reverse	37	44	52	38	48	46	48	33	43	34
TAAGGCACTTTGCCTT	ref_2605_reverse	26	38	26	32	26	33	41	29	34	23
TGCCCCATACAATCCC	ref_2605_reverse	40	26	51	38	41	31	46	26	30	31
CGATTCACAACGGCGG	ref_2605_reverse	19	14	14	17	16	14	17	20	12	11
ACTGGGCGTGAGCTCG	ref_2605_reverse	9	23	26	20	19	7	22	16	8	12
TTACTGTTCGACTTGA	ref_2605_reverse	8	9	13	11	7	8	6	9	13	12
CAGTAGTGCACCTATT	ref_5807_new	25	13	22	14	13	13	29	17	17	13
CTTTGAAAGGTCGAGA	ref_5807_new	73	71	76	67	77	55	80	57	71	57
GCCTCGGTCATACTGG	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GCGTTTTTTCATGCCA	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GTATCCCTACATCTGT	alt_5807_new	176	177	220	167	181	156	188	138	185	164
CGTATGCATGCCGGAC	ref_5807_new	0	0	0	0	0	0	0	0	0	0
TCGTTTTTAGGAGTGG	alt_5807_new	39	55	51	62	66	52	49	30	49	42
CATGGTCAGGTGTTAT	ref_5807_new	8	3	6	8	6	3	3	4	5	1
AGGGTACTGCAGAGCG	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GCTAGGGCAACTGTCG	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GCACAATGGCTGTGTT	ref_5807_new	46	33	49	37	34	46	49	42	68	35
TCCCAACGAATTTTCC	ref_5807_new	0	0	0	0	0	0	0	0	0	0
CTAAACCGATGTTTCC	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GGGGTACAGAAGGTGT	ref_5807_new	1	3	4	2	3	9	0	3	5	1
GTTAGGTTCCGTGTTC	ref_5807_new	72	111	87	90	82	77	85	63	107	62
TTACTATGGCTTCTCA	ref_5807_new	142	135	176	140	147	128	146	133	138	127
GGGATGAATCTGGTGT	ref_5807_new	34	23	31	28	29	16	26	25	29	31
CATCTCTTGCTAGGCA	ref_5807_new	29	29	33	14	35	29	40	21	30	18
CTCTGGTCATGTTGGA	ref_5807_new	61	76	75	63	92	65	84	44	90	61
CAGCTTGACTTCAATG	ref_5807_new	3	8	5	7	12	4	7	5	12	5
TTGAATTCTTTGTGTA	ref_5807_new	30	34	25	25	46	35	44	23	26	24
ATGCTTGGTCTCCAGT	ref_5807_new	7	10	15	18	5	15	22	13	13	15
CGGGAAATTGGTCGAG	ref_5807_new	65	44	38	50	49	51	36	45	46	38
AGTGTTAAGTTGGCGT	ref_5807_new	58	67	64	58	57	56	58	69	76	69
CTATAGGATTTATCGA	ref_5807_new	13	17	13	14	12	8	25	13	14	20
TGTGAGGAGAATGCTT	ref_5807_new	36	43	43	32	27	27	54	35	49	28
GGATCCTCCGTCGTTG	ref_5807_new	4	15	14	15	19	10	15	8	13	4
CTTAGCCTGACTCCCT	ref_5807_new	0	0	0	0	0	0	0	0	0	0
TGTATTTAGGGTGCTC	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GCTCCCGAGTTTCGCG	ref_5807_new	68	78	90	69	70	68	78	60	84	63
GTTTGGTCAAGGGGTG	ref_5807_new	0	0	0	0	0	0	0	0	0	0
AGACGTAGGTCAGTAT	ref_5807_new	0	0	0	0	0	0	0	0	0	0
CCTTTTGATGGTATGC	ref_5807_new	0	0	0	0	0	0	0	0	0	0
TTATCTTCTTCGAATT	ref_5807_new	3	3	4	3	3	3	2	4	2	3
CGCTTTTGTTACTGCT	ref_5807_new	0	0	0	0	0	0	0	0	0	0
CCGCGTCTCGCAGTCA	ref_5807_new	0	0	0	0	0	0	0	0	0	0
CTTGGTAAGGTTCTTG	ref_5807_new	10	13	5	9	17	5	14	5	18	9
CAGTCAACTGTAGAAT	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GATTTAAGGCCGTGTG	ref_5807_new	4	16	18	7	11	10	12	9	6	9
AGGGAGCTTAACAGGT	ref_5807_new	5	3	3	2	5	4	6	2	5	2
CACCACATGGATTTGC	ref_5807_new	31	26	38	42	32	25	33	34	35	36
TCGTTTACCTTCAAGG	ref_5807_new	58	55	72	50	59	66	52	55	78	36
ACAGATCATGTGCTAT	ref_5807_new	0	0	0	0	0	0	0	0	0	0
TCTATTGTTGGCCCAT	ref_5807_new	0	0	0	0	0	0	0	0	0	0
GCACGGTACTTGTATT	ref_5807_new	0	0	0	0	0	0	0	0	0	0
ACACCATTTTCTTATA	ref_5807_new	127	110	142	165	126	134	120	125	122	110
CCGCCGATCCGATACT	ref_5807_new	16	16	13	13	21	10	18	12	18	9
TCCCGAAGTCAAATCA	ref_5807_new	13	19	23	24	22	14	10	27	20	13
TGCGAACGTACTTTGA	ref_5807_new	56	66	75	66	79	71	77	56	67	59
CTTCCAGATATTCGAG	ref_5807_new	72	81	96	60	86	83	93	67	95	58
CTCGTTAGATAGTAGA	ref_5807_new	28	29	33	25	37	24	32	28	22	25
GATCGATTTAATCGGT	ref_5807_new	47	41	58	54	48	42	40	55	62	45
GCCATTCGATTCGGGG	ref_5807_new	0	0	0	0	0	0	0	0	0	0
ATTTTAATATGTCGGA	ref_5807_new	141	131	139	153	120	117	100	128	111	123
ATATAGCCTGCTCTCT	ref_854_RC	110	98	132	117	112	110	102	97	117	100
ACGTGTCCGTTAGTTA	ref_854_RC	51	38	59	48	49	49	42	39	64	55
TATGCGTAGTTAACCC	ref_854_RC	87	83	83	91	64	67	67	74	97	74
CGTTTGGCGGTCTCCG	ref_854_RC	209	162	270	248	167	242	161	216	170	192
CACACCTCTTTATATG	ref_854_RC	6	1	4	2	3	2	6	1	4	2
CCTGCGATCGAATTGT	ref_854_RC	0	0	0	0	0	0	0	0	0	0
TTGTGTGCATACTTTA	ref_854_RC	21	29	24	19	29	18	29	14	27	24
GAGGAAACTGACCGCG	ref_854_RC	70	53	80	55	45	73	50	69	57	52
CCACAAGTTAGAATCT	ref_854_RC	0	0	0	0	0	0	0	0	0	0
AGGAGCGCGGCCAGAA	ref_854_RC	71	60	93	93	54	65	55	82	72	88
CATAGCTTTGCCGCAT	ref_854_RC	102	73	99	84	84	69	78	97	73	63
TGGCATCAAGCTTTTC	ref_854_RC	0	0	0	0	0	0	0	0	0	0
TTAGACTCCTATCAGG	ref_854_RC	2	1	0	5	3	2	4	2	5	5
CTTATGACACGTGTAT	ref_854_RC	50	53	58	49	62	49	62	33	60	35
ATCTGTCATCTTTACA	ref_854_RC	47	33	41	39	28	36	36	28	44	32
CGGACGTTGCTCTAAC	ref_854_RC	36	42	54	46	27	37	35	42	22	32
CAAGACCACTTCCTTG	ref_854_RC	0	0	0	0	0	0	0	0	0	0
TACGACCTGTGTGTTC	ref_854_RC	223	262	288	253	254	187	289	239	295	205
GAGGGTGTAAACTCTG	ref_854_RC	194	173	273	204	208	185	225	169	172	198
TCGGTGCACTAAATTA	ref_854_RC	132	89	145	125	82	95	91	130	104	107
AAATTACTGACTCGTC	ref_854_RC	36	49	58	52	44	53	37	34	45	40
ACCATCATAGTTTTTA	alt_854_RC	42	41	53	48	46	46	51	61	48	38
TCTCTTCACTAGGGTT	ref_854_RC	82	54	70	62	72	67	61	56	47	54
AATATATTTAGAGCCA	ref_854_RC	56	57	51	45	34	45	40	51	38	40
CCAGGTGCTTGCACCT	ref_854_RC	9	21	15	7	18	7	15	8	10	13
AGCCTAATATTCCTTT	ref_854_RC	128	81	148	106	92	114	93	94	111	77
AAAGTTCCCACTCCAT	ref_854_RC	98	125	132	128	102	112	99	106	106	105
ATTCGTATGACAGCCC	ref_854_RC	25	24	37	14	27	30	21	19	36	21
TCTGCTGTAAGCTATC	ref_854_RC	44	44	56	36	33	43	30	51	35	38
GGATTATAAGTAAACA	ref_854_RC	51	38	65	57	42	60	45	57	51	47
CGTTGTTCGAATTGCG	ref_854_RC	9	9	16	21	14	8	13	14	7	13
GTCCCTTCGTCTATGT	ref_854_RC	27	20	29	30	38	24	25	31	24	34
TGTGGGGGTCTGCGTA	ref_854_RC	9	7	9	10	10	7	11	8	12	5
TTGACAGTGAATACCC	ref_854_RC	12	11	15	13	15	12	8	14	8	19
GTTAAACCCCTATGCT	ref_854_RC	35	8	21	20	17	19	9	18	10	17
TATCTTCATTTTACAG	ref_854_RC	0	0	0	0	0	0	0	0	0	0
TTAAGTGACTCCGTCA	ref_854_RC	39	33	64	51	45	46	35	61	42	51
CGTTAACCTCGTAGAT	alt_854_RC	8	18	22	19	11	7	10	14	14	12
TCGATTCTACCCCTCG	ref_854_RC	28	35	38	41	32	33	33	32	16	28
ATCTGGGCTATAATCC	ref_854_RC	50	42	62	63	52	57	49	62	54	34
TACGCAGGGTGACCTT	ref_854_RC	0	0	0	0	0	0	0	0	0	0
ACACCCTGTGGAATCG	alt_854_RC	4	5	7	7	6	8	3	6	3	12
CCGCGTAGTAAATGGG	ref_854_RC	20	21	20	17	20	17	22	21	26	16
TGACGGGTCGGTCCTT	ref_854_RC	161	146	185	152	130	177	116	172	159	141
CTTTCACTCATTTGCG	ref_854_RC	91	64	106	61	70	72	81	65	68	72
CTCTATATGTTGCTGT	ref_854_RC	17	16	21	17	11	16	25	20	38	12
GCCGTTGAGCGGCGCT	ref_854_RC	80	80	120	86	63	87	70	93	73	79
GGGCCATTACTTGTTT	ref_854_RC	1	4	14	5	2	3	4	6	7	5
TTTGGATCCTTCGGGG	ref_854_RC	18	23	19	20	23	10	16	14	17	18
TCTGCCTCCGAGTAGT	ref_854_RC	16	5	6	16	3	10	11	11	11	9
AAACTTCTTTCGCTTC	ref_854_RC	15	5	12	20	5	10	2	12	7	10
CGGTGGCCTATTTAGT	ref_854_RC	97	83	107	89	94	95	83	97	76	91
TACTTTAGTTATCTAG	ref_854_RC	321	220	388	317	238	299	271	264	263	258
AATACGACGGATACTT	ref_854_RC	54	28	61	56	44	38	46	49	34	53
CTTTTTACTCGTCGTT	ref_854_RC	27	20	33	30	31	24	32	33	44	28
ACTGCGCTCTGTAAAT	ref_854_RC	183	138	237	206	156	139	144	185	168	155
GTCTTAACCTTGCTCA	ref_5859_new	0	0	0	0	0	0	0	0	0	0
TACTCTAATCAGCGTC	ref_5859_new	2	5	3	1	5	1	8	4	2	1
TTCGGATTGCAGGAAC	ref_5859_new	62	99	88	74	108	63	120	56	115	70
ACGGAACTATCATGTA	ref_5859_new	34	42	47	41	41	40	53	20	52	32
GTCCTTACCGGTACGG	ref_5859_new	0	0	0	0	0	0	0	0	0	0
GCGTGATAGACCCCCT	alt_5859_new	46	75	68	51	69	44	76	52	83	62
GTTTTCCTACAGGTTT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
CGTGGTTTCGTTGGCT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
TATGTTCTTACAGTTG	ref_5859_new	26	37	29	30	40	23	45	22	43	21
CGTGGGTAAAATTCCT	ref_5859_new	20	39	29	25	42	26	33	17	41	20
TCCGGAAACCAGAACC	ref_5859_new	55	60	57	49	83	63	83	42	98	58
TACAACGGGCGATATC	ref_5859_new	23	40	19	27	39	26	39	23	45	16
TGTGACAATTCATCGT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
TTGTGGATCCGTTAGG	ref_5859_new	0	0	0	0	0	0	0	0	0	0
GTTTTCTCTATGTCAC	ref_5859_new	36	80	39	33	59	51	65	43	62	36
CCTACGGCATGGTCTT	ref_5859_new	31	31	39	34	49	32	45	29	40	17
TGCTATGGACGCCCCT	ref_5859_new	73	82	76	60	81	76	93	50	104	40
TAGGGCCTTTTGTTAG	ref_5859_new	0	0	0	0	0	0	0	0	0	0
GAAACATGCCGAGAGT	ref_5859_new	10	15	16	11	14	10	20	6	18	15
TACTGTCGGTGGGATC	ref_5859_new	0	0	0	0	0	0	0	0	0	0
ATTTCTCTTTCATTCC	ref_5859_new	0	0	0	0	0	0	0	0	0	0
TTATGGTATCTTCACT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
TGTCTACCTAGGGGCT	ref_5859_new	62	96	91	70	96	62	85	73	99	62
AATAATGTTTTCGACT	ref_5859_new	48	62	57	34	71	62	76	39	58	35
ATTCTTCTGCTTCGGT	ref_5859_new	11	15	19	11	17	11	14	13	11	7
CCTACATCGCTCTCTC	ref_5859_new	33	43	51	45	68	35	63	45	65	27
TATTACAGATATTTTC	ref_5859_new	132	184	138	154	193	139	144	171	181	131
TCAGGTCTATGTTTGT	ref_5859_new	83	91	64	43	105	63	102	51	110	65
GTTTGTGATCAGTATT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
CGGAGACACAGGTATT	ref_5859_new	10	15	19	18	14	7	28	10	14	7
ATGTTTTCGATCGCAA	ref_5859_new	9	11	6	11	10	14	13	5	21	10
CGCGGAAACTTCCGAT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
AAGGTTGAGTCACCGC	ref_5859_new	20	30	22	10	15	21	41	10	33	20
GGCTGCCCTGTAACGC	ref_5859_new	32	55	40	22	51	31	39	32	56	32
GTGCCACATTTTATTA	ref_5859_new	0	0	0	0	0	0	0	0	0	0
TTCGTGCCGAGGTTTT	ref_5859_new	87	120	113	90	124	74	115	73	121	80
TCTGGATTCGTAATCG	ref_5859_new	76	127	83	63	108	54	130	81	115	75
CGTGGGTCTACGTTTT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
GCAGCTTCATGCTAAC	ref_5859_new	126	210	177	143	272	132	211	147	215	112
GTTCTCGTGGTAACTA	ref_5859_new	7	17	12	11	11	12	8	2	11	9
TATCGTATTAGGTATT	ref_5859_new	16	13	13	10	19	13	14	16	30	15
AGTTTGGCCAATGCCT	ref_5859_new	1	9	1	2	5	3	12	0	6	1
TTCCTAGTAATTACGG	ref_5859_new	3	6	7	1	10	7	9	1	6	2
CGACGGGCCATGACTC	ref_5859_new	15	23	16	20	25	16	25	10	27	13
GCACTCAGCTTCACTA	ref_5859_new	18	32	22	19	26	18	32	15	38	15
GTGAAATGAATCGGGA	ref_5859_new	25	30	23	23	27	14	23	14	21	26
CCAGTTAGTAAGGGCT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
CACGTCACATCACCGC	ref_5859_new	33	42	29	29	54	38	45	38	50	21
CCTCTCGAGACGTGCT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
ACTGGTCGACACTCTT	ref_5859_new	22	29	21	21	18	21	33	30	24	20
TCCAGGAATTATTTGT	ref_5859_new	5	5	6	6	5	1	5	5	14	4
CCGCTGGTGCGCGTTG	ref_5859_new	13	34	21	14	40	25	45	15	38	18
GACTAGCCCCGTTGTT	ref_5859_new	7	12	11	9	20	8	15	8	16	11
CGTGTCGTGCCTTGGG	ref_5859_new	17	24	22	24	32	16	35	16	37	9
CCTGACTTGCGGTGTG	ref_5859_new	26	41	29	24	36	27	53	16	43	32
TCTGCTATATGGAAGC	ref_5859_new	0	0	0	0	0	0	0	0	0	0
ATACGTGAAAGCAGTC	ref_5859_new	8	42	31	13	39	15	42	15	28	13
CAGGTCAAAAGTCATT	ref_5859_new	10	12	7	10	9	4	18	7	16	8
GCTTGCGCCGGCATCG	ref_5859_new	12	10	12	11	14	17	18	8	14	8
TGTGGCGTTTGCAGGA	ref_5859_new	12	24	11	10	13	15	16	11	23	15
ATTACCAGCTACTGCT	ref_5859_new	0	0	0	0	0	0	0	0	0	0
AATTTCTATACCGCAC	alt_5859_new	10	15	15	11	23	13	14	9	21	12
CGGTGTATCTTTAAGT	ref_5859_new	69	107	64	44	104	70	91	50	98	41
TTTATTATTTAACTAA	ref_5859_new	5	8	16	4	9	5	4	7	3	6
AAACAGTACCTCTCGA	ref_5859_new	0	0	0	0	0	0	0	0	0	0
CCAATTTCGGACTAAG	ref_5859_new	24	30	16	21	20	19	33	16	29	15
TTTGTTGTCTGGATTA	ref_5859_new	56	69	70	55	76	41	83	51	101	34
CTAATAAGATGCCAGA	ref_5859_new	0	0	0	0	0	0	0	0	0	0
ACAAAACAGAGCTCAG	ref_5859_new	24	37	25	30	34	21	55	40	38	22
ATTGGGCGCCGCGAGC	ref_5859_new	13	20	8	15	18	10	24	11	18	18
CAGTATTCGGTTCTGG	ref_5859_new	0	0	0	0	0	0	0	0	0	0
GTCGGGTTTGGGCATC	ref_5859_new	4	14	8	11	7	7	8	9	16	4
TCTATTTCATTCAGCA	ref_5859_new	6	16	11	11	20	5	16	12	16	4
GGCATTCCGATATTCT	ref_5859_new	26	33	26	28	37	22	37	31	38	29
TGTCCTAACGGCGTTG	ref_5859_new	22	54	30	27	45	20	40	19	53	22
CGAGCCAGGGTGCGGG	ref_5859_new	3	29	4	4	18	4	18	1	16	3
GGTTATATAACCACGC	ref_5859_new	0	5	2	0	0	2	1	1	6	2
CTACGCAAGTTACGGA	ref_5859_new	9	17	14	9	19	9	15	3	7	7
TGTATATTTCCGCGTC	ref_5859_new	0	0	0	0	0	0	0	0	0	0
CGCAGTTCGGGGACCT	ref_5859_new	12	15	16	14	15	13	23	10	18	10
GTAGCCTTTCCCCCTA	ref_5859_new	29	35	48	34	45	28	53	21	59	26
CCAGGACTGGAATGCT	ref_5859_new	9	12	2	6	13	7	10	4	14	5
ATCACCCAATCGATTT	ref_5859_new	57	124	97	64	112	56	112	65	91	39
CCGTAGTACTTGCGGA	ref_2558_reverse	57	68	87	89	41	84	56	91	64	70
CACGGATTATATTGCA	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
AATGCATATGCTGTTT	ref_2558_reverse	5	0	1	0	1	1	4	1	1	1
AGTTGCAGGAGATGCA	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
AGGCGACAATGCATAT	ref_2558_reverse	60	34	67	49	45	46	40	44	42	44
CTACGCTTTTGTTAAA	ref_2558_reverse	7	8	8	10	3	3	5	7	9	3
GGATCGTTGTGTGGGT	ref_2558_reverse	22	26	37	28	34	33	23	31	31	26
CGACCCCATCTTTTAA	ref_2558_reverse	33	38	43	39	35	35	44	32	29	27
GCTTGACGGTGCTTCT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
TCATCAGTTCTATGTT	ref_2558_reverse	53	40	79	54	59	61	60	53	52	48
CAATGGTATTATCTGA	ref_2558_reverse	69	61	78	68	68	65	63	63	73	63
TGTTTGTCGTTTATGT	ref_2558_reverse	83	54	104	84	65	77	74	80	66	73
TTCCGGTTTCAAGTGC	ref_2558_reverse	5	10	5	5	12	11	13	1	9	6
GTTCTGAATGATTTCA	ref_2558_reverse	6	3	3	11	9	4	3	8	5	9
TTGGAATGTAACGTGC	ref_2558_reverse	7	5	9	11	7	8	6	12	9	9
TCTGGCTCTGTAGGCA	ref_2558_reverse	64	45	61	52	55	42	52	41	49	42
TGATACCCGCATCGCG	ref_2558_reverse	48	55	49	64	52	50	47	52	55	57
GCCTAGCATTTTATTC	ref_2558_reverse	48	30	36	40	29	32	32	31	21	18
ATGACTTGCGTTCAGG	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTCTTGTGGTAC	ref_2558_reverse	15	15	17	11	14	9	23	9	16	17
AGAAGCTTATAGCGCT	ref_2558_reverse	22	29	26	22	20	24	19	24	23	18
TGGAACTGGGTAGGCT	ref_2558_reverse	19	15	10	18	10	10	8	9	11	8
GGGACTGATCAGGCTA	ref_2558_reverse	32	19	15	22	16	22	22	20	21	13
CTTGGCACTTAAGAAT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTACTTGTATGTT	ref_2558_reverse	75	74	100	90	61	77	77	75	70	80
TAACGGTACTACTGCA	ref_2558_reverse	6	2	2	9	3	4	3	3	4	2
CATGAACTTTGGGTAT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGCTTTACGAAGT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
ATGGATGTTTGCGAGT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
TCACTCGTCTTATTTC	ref_2558_reverse	20	23	33	27	24	13	24	21	17	26
GTGAACATTCCAGGGG	ref_2558_reverse	10	17	43	17	23	14	18	17	14	15
CGCTAACCACTCGTGA	ref_2558_reverse	22	32	36	25	29	23	30	14	25	29
TTACAGGCTGAAACGA	ref_2558_reverse	33	31	59	37	32	32	36	35	52	33
CTCTGTTTTGCACCCT	ref_2558_reverse	67	57	75	69	44	62	56	72	40	64
GCGTACTATATCGGCG	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
ACACCTACTTTTAATG	ref_2558_reverse	4	5	3	3	1	3	0	1	1	0
ATCTTGGGGTTACTAT	ref_2558_reverse	19	16	36	22	7	13	9	24	19	20
TACTCAAGACTATTCT	ref_2558_reverse	21	13	28	14	19	19	11	26	5	20
TTTGTGCTTGCATTAG	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGATAGATAGACT	ref_2558_reverse	99	114	110	97	104	102	84	93	94	103
TCAAACTCTACGTGGT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCTTGCGTTCAGG	ref_2558_reverse	354	288	430	363	317	336	315	296	324	278
CACTCGGTCTTCTCCT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTTGCTAATCTAC	ref_2558_reverse	34	31	51	45	44	43	33	47	36	40
CTTTCGTTCTACGTAT	ref_2558_reverse	93	47	107	61	74	76	72	75	72	82
GATCAGGGCTTACTAG	ref_2558_reverse	17	14	19	12	14	12	22	18	22	8
TCCAATTTCTTTTCGC	ref_2558_reverse	79	105	90	102	107	94	120	91	124	75
CTGTATATCTAACTGC	ref_2558_reverse	80	55	85	62	61	64	67	52	72	68
CGTCGGTACCCAAGGA	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
TAGTACCCTTGGTCGT	ref_2558_reverse	45	37	65	52	59	41	68	41	55	48
ATTATCGCAGCGGGCA	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTGCACCCCGTAC	ref_2558_reverse	16	23	23	11	17	12	22	18	18	15
AATCTATCCTTGCATA	ref_2558_reverse	19	23	23	24	32	27	25	31	19	18
GGTTCTAGCAACCTAT	ref_2558_reverse	16	12	24	20	22	21	18	9	18	14
AATAGCTTTTTTTGGC	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
AACAGTGCGTCCGCGT	ref_2558_reverse	13	17	10	16	19	12	23	7	17	6
CCTCTCTATGTTGTTG	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTATTTTGATCGG	ref_2558_reverse	31	22	32	43	22	16	22	27	19	33
ATCAGTGGTATCTTCT	ref_2558_reverse	79	58	73	79	82	62	61	69	63	54
GCATCAAATCCATCTC	ref_2558_reverse	264	242	301	268	236	230	234	243	236	219
TTATGACGGAGAGCCT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCTGGCCAGCCCA	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
GATTGGATTTCGAATC	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
GACCTTTATGCTGGGA	ref_2558_reverse	30	34	41	36	36	28	35	38	35	32
GCCGGTAACAGTACAC	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
CCCACTACTGCACCCC	ref_2558_reverse	50	54	90	82	44	55	39	59	48	56
TCATAGCATTTCCCTA	ref_2558_reverse	18	24	30	18	21	27	21	26	22	15
CCATGTTCTTCAAAAT	ref_2558_reverse	18	23	24	26	33	26	23	13	18	13
TGGCTTATCCACTCAC	ref_2558_reverse	7	5	11	6	7	9	9	7	9	11
TTGATTCATCAATGAC	ref_2558_reverse	15	5	19	15	5	10	13	5	13	6
TTCCGGTTATGTCTGG	ref_2558_reverse	8	10	12	7	3	2	11	9	12	7
CTTTCATCCACCTCGC	ref_2558_reverse	38	23	39	27	29	34	26	45	39	22
TTCCGGTTCGGCGACA	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
CATACCCCATATGTCC	ref_2558_reverse	34	44	36	48	42	29	38	19	48	18
CATGTGCTCAATAGCC	ref_2558_reverse	302	221	353	299	243	256	246	248	266	263
GTGAAGGAAATAGGCT	ref_2558_reverse	55	54	48	48	46	48	57	48	60	30
GTCTTGGTGTTGTATC	ref_2558_reverse	5	4	6	4	7	3	8	4	2	8
CTATGTAGTAAGTTGT	ref_2558_reverse	31	21	24	22	24	16	27	15	20	30
TATTTTGCCGCGTAAA	ref_2558_reverse	51	51	55	59	50	60	62	51	70	57
TTATATTAGGTTGGGC	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATGTCGGTCGGG	alt_2558_reverse	46	41	48	42	23	30	27	42	31	42
TTGTCGGACTGTACTT	ref_2558_reverse	2	4	9	5	9	5	7	8	11	7
CTATTCATCGTAGGAC	ref_2558_reverse	41	31	56	57	38	56	39	42	56	31
CGTTCAAGCACCACCA	ref_2558_reverse	22	33	31	24	33	24	18	22	29	9
TGCCTTTAACGGTATC	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTGTCACGGTCGC	ref_2558_reverse	21	14	33	20	24	19	19	19	16	17
GTTGTAATTGTTGTCT	ref_2558_reverse	116	110	112	121	114	118	118	93	118	102
TTCTTTGTCAGTGGCA	ref_2558_reverse	49	63	52	31	49	43	53	40	45	30
TCCCTGGGGCCGTGCC	ref_2558_reverse	7	16	11	11	12	8	5	13	22	7
GTGACCCAGTTCTAGC	ref_2558_reverse	70	72	77	55	57	49	53	73	60	66
AAACAACACGTTATAC	ref_2558_reverse	112	91	118	107	85	91	84	106	91	87
CCGTTCCTTTCTGCTA	ref_2558_reverse	30	30	35	29	30	31	24	26	26	29
TATTAGCCCTCCATCC	ref_2558_reverse	61	62	98	65	60	63	63	74	66	66
GGAACATCGGCTTGGT	ref_2558_reverse	14	17	22	13	15	17	14	8	16	13
CATATTTTTCCTGGGT	ref_2558_reverse	38	30	31	19	28	30	28	20	26	29
CAGCCCAAACATCACC	ref_2558_reverse	15	18	23	15	34	13	39	22	39	20
GCTCTTTAGTATTTAG	ref_2558_reverse	45	34	43	37	31	35	48	38	53	31
GCTTAGAATTATAGAA	ref_2558_reverse	63	62	57	91	47	60	70	74	67	73
TCGGATGTCGCGTACC	ref_2558_reverse	5	5	11	14	11	7	8	11	11	9
CGGAGGGAAGGCTTCG	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
AATATTTTTCGAGCAC	ref_2558_reverse	15	10	19	19	6	12	6	17	19	20
AGGTATGACTTTTCTA	ref_2558_reverse	77	53	89	63	74	67	55	86	77	72
TGCTCGTTTACGAACT	ref_2558_reverse	0	0	0	0	0	0	0	0	0	0
AAAAGTGCTTCCTAGG	ref_2558_reverse	80	72	107	85	78	94	74	80	79	65
GAGCTGCGATAGCGTC	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TTGACCGATCCTGTAG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
CCTCTCATTTCCCTCC	ref_2783_RC	7	7	12	11	3	6	11	3	4	3
TGTTCAATTGCTTTGC	ref_2783_RC	37	27	50	33	35	50	29	49	30	32
ACACCTTCAGTTCCGT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
ACTGTGGGCAACGGTA	ref_2783_RC	23	9	23	20	19	13	22	18	19	16
AACTATGAGTTTACAT	ref_2783_RC	43	38	44	42	30	37	56	27	46	58
CCATTCGGACGTCAAA	ref_2783_RC	193	188	263	221	203	214	216	238	212	193
GGCCTGAGAATTCCGC	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
ACCGTGCTGCAAGCTT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
GTTCACGGACAGGCCC	ref_2783_RC	66	64	120	104	73	97	67	114	98	84
CTATTAAGTGGACGAT	ref_2783_RC	36	39	51	42	29	29	38	24	40	35
GTAAACGCACCATACA	ref_2783_RC	55	43	70	57	38	46	51	58	51	48
GCCTTCAGACTCTGTC	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TAGGAAACGAGTTTTC	ref_2783_RC	65	63	116	77	63	76	73	78	62	60
AGCAGAAGACTGTGGA	ref_2783_RC	70	66	82	97	67	71	75	76	73	84
TCGCTTCAAAACGCCG	ref_2783_RC	61	42	115	77	45	81	58	77	53	47
TCTTCCCTATGTTGTC	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TAGCTCTGGAAACGCT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TTAGAATGGATCATGG	ref_2783_RC	48	23	66	51	40	31	29	29	25	36
TCGAATTACTTACGCA	ref_2783_RC	0	0	3	1	1	2	1	2	1	0
TTTTCTGGTGCGTCCT	ref_2783_RC	7	3	5	16	7	6	6	7	2	11
TACCTGTATTCGTATG	ref_2783_RC	21	42	36	37	43	23	31	29	45	30
CTGTTAGACTTCCGTA	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TGTGGTCGCCATTAGG	ref_2783_RC	24	13	30	24	22	22	14	18	14	16
TCTCGAGACCTCTCCC	ref_2783_RC	147	99	145	138	106	119	106	138	131	100
GACCCGGTCCTCGTTC	ref_2783_RC	4	8	7	10	14	2	7	8	11	8
CCACACCGACACTCTT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
ACCCCCTGCCCTGCTT	ref_2783_RC	40	21	48	50	17	30	24	33	27	25
TAAGCTTGGCTTACTC	ref_2783_RC	57	53	54	49	44	47	43	45	49	47
TTCCATTCGCGTCCGG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
CTATCGTCACGCTTTA	ref_2783_RC	92	91	126	94	96	114	78	84	93	82
AATGATGAAGCCCTTG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
GAACTATACTAATATA	ref_2783_RC	201	162	234	269	187	186	149	187	166	241
ATCAGCCATTGGTCTG	ref_2783_RC	15	9	3	5	8	2	7	6	3	6
TGGACGGCTCTGGTTA	ref_2783_RC	208	177	256	218	178	201	193	226	188	177
ACCAGTCAGGTCCAGG	ref_2783_RC	22	30	34	42	30	29	29	23	33	24
GGTACAGTATCTCGAC	ref_2783_RC	2	1	2	6	1	6	5	5	1	1
TCAGCATGGCATCAAT	ref_2783_RC	34	24	35	32	18	34	29	33	39	30
TATTTTAAGAGGTGGT	ref_2783_RC	39	28	41	38	32	36	29	40	30	29
GTGGTTGAGCGGGTCT	ref_2783_RC	81	53	97	78	61	64	63	82	49	60
AAGTGCTGCTTTCTAC	ref_2783_RC	170	145	209	157	140	157	148	155	149	113
ATTGCTACAACTTTAG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
ACTGAATCTGCTGGCT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
GCACCTGTCTGACAAA	ref_2783_RC	76	61	83	65	57	51	67	63	69	54
CTAGGCGGAATCGGCA	ref_2783_RC	30	12	55	48	28	31	38	44	36	30
AGGTACAAATAATATT	ref_2783_RC	36	30	51	54	28	36	42	45	38	46
TCATCTCCCCACTGTA	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
ATGTCCTAGGCTATCG	ref_2783_RC	76	65	99	83	84	75	87	72	82	81
CCCCGCTTTCATACGA	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
AGGGATTTTCTATCTT	ref_2783_RC	51	32	54	42	46	40	25	43	44	32
CGCTATGGGGCTCATA	ref_2783_RC	40	39	47	39	44	26	46	51	37	28
ACATCCGTCTCATGCG	ref_2783_RC	72	77	89	85	82	66	63	91	84	64
CTTCTTAGTCAGCCGG	ref_2783_RC	35	67	36	48	63	36	55	35	53	34
CGTTGGCTTGATTAAT	ref_2783_RC	84	60	86	67	63	69	53	53	71	65
ATTTTGCTGCGCCTCA	ref_2783_RC	3	5	7	4	7	6	4	2	3	4
AGATAGTGTCGCAAAG	ref_2783_RC	43	27	45	35	35	36	35	40	30	48
TTTGGCCTGATTTAGG	ref_2783_RC	26	35	47	39	43	37	40	37	26	22
TGACTAGCTGCAACAT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TGAGTACGCTTGTTGT	ref_2783_RC	55	60	77	70	62	67	65	73	61	53
CCTCGGTGCTCTGAGT	ref_2783_RC	5	8	11	13	12	13	9	9	12	6
GGTTAAAGAAACGCTA	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
ATTAGCAGCTCAAAAA	ref_2783_RC	160	126	190	180	127	122	116	135	111	139
TACAGAAAACGGTGAG	ref_2783_RC	28	26	33	31	15	24	15	26	13	24
GTTACCGAGGGCAGGG	ref_2783_RC	15	23	24	12	17	26	19	15	25	14
TTTGCAACTCCTCATC	ref_2783_RC	15	18	12	13	19	15	10	18	17	6
GTGATCTGCTGACACA	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
CCTTTCCCTGTGAAAT	ref_2783_RC	103	94	129	99	83	79	82	103	92	107
TTACTTAAATGAACGT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
AATTGTGTGCTCTCGC	ref_2783_RC	4	6	8	9	5	10	6	8	5	3
CAAATATATATTTTAC	ref_2783_RC	52	29	42	32	31	31	19	27	28	28
CAAGCGCATCGTTTTA	ref_2783_RC	13	41	19	14	30	11	30	10	54	11
CTTTTCGTTGAGCTAT	ref_2783_RC	111	75	136	121	84	110	74	102	84	63
GTGTTCCTGGCATAAA	ref_2783_RC	14	8	25	23	14	14	17	13	22	15
AATTAGGGTGCCACGT	ref_2783_RC	36	20	37	40	22	31	21	41	26	26
GCCAGTGTCGATTGAA	ref_2783_RC	2	0	1	1	2	4	3	4	2	4
GGACGCTCCGATAACG	ref_2783_RC	20	17	22	16	16	21	28	14	8	21
TCTATGCTCTACCATA	ref_2783_RC	104	93	143	96	107	114	120	83	125	104
ATGGTATTTCTTGGGT	ref_2783_RC	11	16	6	3	3	10	3	7	5	3
GGGATTGATTTTCTCT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
GATATGCCTGCGAGTG	ref_2783_RC	26	13	27	28	23	26	26	24	17	22
ACTTGATGCTTTCGTG	ref_2783_RC	155	104	187	137	89	159	107	129	111	125
TATTGTGTTGCTACAA	ref_2783_RC	40	32	50	39	43	41	35	30	32	33
GAATTGAGCTAACGTA	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TGCGCATTTGAAGTTG	ref_2783_RC	16	19	16	25	22	18	16	15	24	26
TGCCCAATTAAGCAAC	ref_2783_RC	155	130	217	221	138	173	151	149	136	140
ACGGATACTTCTTGCT	ref_2783_RC	26	23	54	49	28	25	31	25	22	29
ATTGAGGGCCTTTCGG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TTTTTATACGGGGGTT	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TTGTGGAGCGGACTTA	ref_2783_RC	37	26	41	55	28	31	37	39	40	44
CCTACCCGACGTTTCT	ref_2783_RC	31	40	47	40	38	37	36	51	47	33
TTAATGAATCCGAACC	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
CTTAATATTACGTACC	ref_2783_RC	66	67	63	44	45	51	70	39	58	59
GACGAGTGCGGTGATA	ref_2783_RC	2	1	3	3	2	5	4	0	6	2
GCTCATTTATTTGTAT	ref_2783_RC	87	55	90	83	54	80	66	78	59	66
GTTCCGCAGTATGTGC	ref_2783_RC	33	34	49	37	28	35	33	45	37	32
TTGCTCATAATCCATG	ref_2783_RC	24	15	24	22	18	10	9	25	14	11
TCAGTTATGATCCTGG	ref_2783_RC	83	57	123	85	89	86	64	88	79	83
ATTGCAGTATGCGGCT	ref_2783_RC	1	1	1	5	3	2	2	2	3	2
CACAATGCAGTCGGTT	ref_2783_RC	22	15	19	11	5	23	6	10	14	17
TCGAGGCTCGAATACT	ref_2783_RC	40	32	46	42	35	43	33	41	48	37
ACTTTCTTGGACGCTG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTACAGAATCGT	ref_2783_RC	12	13	16	7	7	10	7	7	10	10
TCATTCGGACAGTAAC	ref_2783_RC	11	8	17	18	14	17	15	12	14	11
TCTTGCTCGTTTCAGC	ref_2783_RC	0	3	0	0	0	0	0	0	2	1
TCGTATTAAAGTGTGT	ref_2783_RC	13	11	19	8	9	14	7	8	18	6
AGTTATCAACCGTTGA	ref_2783_RC	77	70	102	100	49	90	78	73	66	64
GAATATCTGGACGTCA	ref_2783_RC	42	24	39	49	36	40	26	28	20	29
TCCTGACTTCCCGTCC	ref_2783_RC	69	61	70	57	58	42	67	56	47	44
TCTGACAATGTAACCG	ref_2783_RC	18	26	26	21	28	18	25	27	13	11
TTACAAGGGAGGGAAT	ref_2783_RC	23	12	16	14	14	15	15	13	15	12
GATAAGGAAGGGGCTG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
CTGTATCAGCAGCATG	ref_2783_RC	0	0	0	0	0	0	0	0	0	0
ACAAGCTGCCGGTTTA	ref_2783_RC	57	35	59	39	42	28	42	39	40	43
CCCCCTAGTTGGCAAT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
CCTATTGATCTTAGGG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GGTTATTAGTCCAGGC	alt_455_RC	79	58	112	74	74	85	81	82	76	58
TCGACTTAGACGAGTG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GTACCCGACGATTACC	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GGAGTCTTAATGAAGT	alt_455_RC	149	90	132	121	72	108	67	111	99	103
CCTCTGATTGCCATTT	alt_455_RC	15	38	38	31	20	19	20	11	12	19
TCTCCTTGACCATTTT	alt_455_RC	93	112	106	93	120	85	111	74	109	91
TACTCTGCATTGTTTC	alt_455_RC	41	19	35	32	36	38	26	38	23	38
CCATCTCCTGCCCCTT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GTGAGCGCTGATTCTA	alt_455_RC	27	16	31	29	22	23	18	26	28	22
TGTTGATTCTTAGATT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
TCATAATCGGGCTCTA	alt_455_RC	27	20	25	33	16	24	21	14	14	12
GCTCTTGCTGTCCGAA	alt_455_RC	42	30	49	51	35	37	39	46	29	37
CCTCAAGGTGAAGTTG	alt_455_RC	2	4	1	4	5	2	6	2	2	3
CTTAGGTTTTGGCATG	alt_455_RC	1	5	18	9	9	7	6	8	12	4
TGGGTAGACAATGATG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
TTCATGAAACTTGTGT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
CTACATTTGGCCATTG	alt_455_RC	8	6	13	11	9	16	22	11	13	9
AAGACTATTATCACTG	alt_455_RC	21	24	35	24	22	44	17	18	27	27
TTGACTAGCCTACTTA	alt_455_RC	10	7	14	11	9	12	19	11	7	10
CGTGTTGTGGCAGCTT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
TTCTAACCCACTAAAG	alt_455_RC	12	6	23	25	15	22	12	16	20	10
CTGTTTTCAACGCGCG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
ATCCGTCGCTTAGTTA	alt_455_RC	62	83	100	93	76	48	87	60	75	59
GCTTGTTTCCTCATTT	alt_455_RC	34	25	26	28	20	24	24	22	18	20
CGCTTTAAATAACCAA	alt_455_RC	121	105	130	116	102	112	101	118	124	97
CTAGACTTTGGTGACC	alt_455_RC	13	21	31	18	18	14	22	19	17	18
ATTCGCTAGTATTGTT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
ACTACTTAGCCATCGA	alt_455_RC	0	0	0	0	0	0	0	0	0	0
AAAACAGCGAGCCGTG	alt_455_RC	46	33	57	51	33	42	32	55	36	45
CGGGCATTGTACTTCC	alt_455_RC	15	23	19	14	12	20	12	13	12	17
CAATTTTCCCGTTATG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
AGTCCCCCTGATGACG	alt_455_RC	77	59	82	55	43	47	52	48	46	42
ATCAATCAAAATAGGG	alt_455_RC	46	40	46	29	41	41	31	33	34	43
TTGGCTCTCAACCTTT	alt_455_RC	51	34	47	45	50	48	53	48	37	53
GCGATTACGACTCAGG	alt_455_RC	760	647	909	764	698	736	683	711	665	684
GGCACCTCATGCTACA	alt_455_RC	77	69	88	62	84	87	78	64	67	91
AATCCAAACCGCATAA	alt_455_RC	10	13	11	8	12	7	8	17	7	4
ATGTGGTCGCTGTGTG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
AACTTCTGCCTAATCG	alt_455_RC	48	40	62	58	39	40	38	51	58	43
TTGTTTCGGCTCGTTA	alt_455_RC	110	86	131	101	96	105	73	111	90	102
TATAAGGTCGGCAACC	alt_455_RC	195	146	227	180	137	179	175	168	156	185
CTCGAGCTTCTTGAGA	alt_455_RC	28	10	18	20	19	20	21	12	18	26
TCGGTTCCTGAAGCCA	alt_455_RC	42	15	39	29	17	24	28	19	17	24
TCTCTTAGGAGGATTT	alt_455_RC	25	20	25	19	17	33	10	30	13	27
TGCGCTTGAACATAGG	alt_455_RC	49	50	66	66	42	47	65	67	55	40
AGAATCTACTCCCGTT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GTTTCCGTGGAGCCTT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GCGGAACTTCGTTTTC	alt_455_RC	71	53	92	82	52	74	71	56	64	75
AAAGTTCGTATTTAGG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
TCCTATATGATACCCC	alt_455_RC	19	14	18	20	16	25	17	8	14	15
GCAGCCTGTTGAAATC	ref_455_RC	65	126	96	71	184	65	147	67	178	48
CATCCCCAATCCGCTC	alt_455_RC	14	9	12	5	13	12	14	9	9	18
CCTTTATTCTAGCCCC	alt_455_RC	5	7	9	6	9	5	6	3	8	6
TACTCTGGCCCACATT	alt_455_RC	34	29	48	21	34	30	27	27	19	37
TTTTCATCTAACTTTC	alt_455_RC	253	162	291	257	212	275	170	263	193	265
TCATTGCTTTATGGCA	alt_455_RC	50	51	52	48	55	52	53	54	55	46
TGGCTATAGTTCAGCG	alt_455_RC	66	46	75	62	57	53	50	52	53	63
CATTTTAAGGAGGACG	alt_455_RC	15	21	16	20	20	13	15	9	25	18
AGGGTATTAATTCTAT	alt_455_RC	22	20	34	18	15	18	20	21	16	13
GATATGCCGACACCGC	alt_455_RC	56	37	55	53	28	51	54	50	36	43
TCATGGATCTAGCGCT	alt_455_RC	21	25	25	14	14	21	18	13	20	15
AATGGGGTACTATAGT	alt_455_RC	3	11	3	2	4	3	4	3	7	2
GTTTTTGCGAACCCAC	alt_455_RC	50	27	39	35	18	34	27	38	33	27
TACTGTATGGTATGCG	alt_455_RC	45	39	41	36	63	41	53	42	38	37
GCTTGGTAAGGTTTAA	alt_455_RC	19	18	17	19	13	21	13	17	20	21
CAGAGACTATTTTATG	alt_455_RC	210	152	230	212	182	210	158	158	184	189
GTTAGATTGACCATTA	alt_455_RC	20	19	26	26	21	21	23	25	24	20
GCTCACATTTTTGGCG	alt_455_RC	43	33	45	45	39	52	26	37	43	31
CTCTAGGATCATATTG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GGGTATAAATTCTCTT	alt_455_RC	68	65	85	91	87	86	78	87	66	66
ATAGTACTTTATAGCC	alt_455_RC	0	0	0	0	0	0	0	0	0	0
ACATGCTCTTTCGTTG	alt_455_RC	22	18	45	41	37	31	25	32	27	24
ACCTGGCCCTAAACCG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
CATTGTACGCTCATCC	alt_455_RC	7	17	10	16	16	9	11	6	19	7
ACCTTCGGCAGCTGTC	alt_455_RC	14	13	18	18	13	10	16	8	12	18
CAGCTTAATTCTGATA	alt_455_RC	0	0	0	0	0	0	0	0	0	0
TAAGCGTTCCGCGTTC	alt_455_RC	28	19	26	27	10	17	15	27	19	21
CTGCCCTAGAGAAAAG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
ACGAGTTTATTAGGAG	alt_455_RC	23	23	27	19	24	21	15	28	21	15
TAATTTCGGCACTCAG	alt_455_RC	9	12	12	4	8	10	8	6	6	9
AAGCTAAACGCAAGTT	alt_455_RC	7	17	14	16	12	8	18	8	14	19
CCGTCTTCGAGTGTTC	alt_455_RC	4	16	18	19	20	17	32	18	25	13
GAAGATCATGTGTACT	alt_455_RC	14	6	20	13	11	5	1	8	11	11
TTCTAACAGGTTCCCT	alt_455_RC	4	4	6	7	6	2	6	4	5	2
TTCTGTGATTTCGAGG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
CTGACTAGCTTGAAAG	alt_455_RC	10	11	11	6	11	12	16	13	17	16
CTTTTACACGTCTAAC	alt_455_RC	0	0	0	0	0	0	0	0	0	0
AAACTTAAGGGTTCCG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCATGGCGCTTT	alt_455_RC	28	13	27	24	17	30	13	20	28	25
TCGATTTGTCCGCTCA	alt_455_RC	0	0	0	0	0	0	0	0	0	0
CAGTATTACTTACCGT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
CCAGCCTCATTTAAAT	alt_455_RC	4	13	1	2	11	4	4	3	22	5
TGCTGGGTTTAGCGGA	alt_455_RC	38	31	39	32	36	41	40	32	39	23
ATGGCGGATAGCAGAC	alt_455_RC	8	12	12	7	6	6	7	6	4	6
AATGATCGTAAATCAC	alt_455_RC	0	0	0	0	0	0	0	0	0	0
TAATCACTCCCATTGC	alt_455_RC	10	29	10	10	33	7	31	5	28	5
AAAACATCTGCAACCG	alt_455_RC	39	23	50	36	30	43	34	40	45	39
AAGGCCGCCACGACCG	alt_455_RC	38	71	38	31	67	36	96	29	84	39
TATTCCGATCTAGTCC	alt_455_RC	2	4	0	1	0	1	1	3	0	0
CCGCGGTTATAATCCT	alt_455_RC	105	83	129	102	98	103	117	100	104	65
ATTATCGTATCGGAGC	alt_455_RC	11	19	25	15	16	14	14	23	16	12
CGCTTTTTGTCTGCGG	alt_455_RC	56	48	72	61	68	47	53	51	67	58
CTCCTCCACCTTTGGG	alt_455_RC	279	255	328	281	269	273	320	250	296	251
CCAAGAACCGTAGGTT	alt_455_RC	29	28	35	26	36	25	27	25	22	22
CTCCCGGTGCGCATTT	alt_455_RC	1	0	3	2	2	2	1	2	1	1
TCCGCCTGAGTATTCT	alt_455_RC	13	16	21	19	17	13	22	22	17	24
CTTCGCCCTGGTGATC	alt_455_RC	41	53	36	50	59	38	61	20	95	28
TTGACAGATCTTCCGT	alt_455_RC	30	26	24	21	22	18	20	31	19	17
TAGACATCTAGTGTCG	alt_455_RC	90	82	103	104	80	79	93	92	114	94
ATCTCTCCGAAGTCAG	alt_455_RC	0	0	0	0	0	0	0	0	0	1
TGATTTGGTTATGCGT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GTAGGTTTTCTGCCCA	alt_455_RC	67	45	77	47	42	51	35	47	45	48
TTAGTAAGTGTGCGTA	alt_455_RC	98	62	120	81	93	94	120	91	91	75
CCTCGGCATCTTTATA	alt_455_RC	13	8	8	7	7	9	6	4	4	8
GCAGCCTTGTTTATAT	alt_455_RC	36	26	36	29	24	32	26	33	20	24
TTATTTTATACAGTTT	alt_455_RC	373	300	413	348	305	331	303	300	305	294
TGGAGCGCCATTTGTC	alt_455_RC	61	45	79	64	41	70	49	52	42	67
TTCCTTCCATTTGCGA	alt_455_RC	18	13	23	17	21	21	20	19	18	16
ATTGAACCTGTGTTTG	alt_455_RC	77	52	70	63	64	63	60	63	69	69
TGCGGCACGTACAGTG	alt_455_RC	74	64	102	63	59	76	58	62	64	67
CTCACTTGCTACCTGT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GCCCGTTTGGGGATTT	alt_455_RC	80	70	97	73	78	67	58	70	65	78
TTAAGGTGTTGTACGT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
ACGGTTTATTGATCTG	alt_455_RC	22	15	23	31	19	17	27	12	26	15
TAAGTTCGTATTTAGG	alt_455_RC	303	243	404	364	273	296	234	254	266	282
GGTCATTCCCGTCTAC	alt_455_RC	9	11	20	12	17	5	9	14	14	14
GTCAGAACACTCTTCG	alt_455_RC	51	30	72	41	42	51	54	46	42	47
TCTTGTACTTGAAGGT	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GTAGGCACGGGCCACA	alt_455_RC	92	69	97	80	89	59	79	57	95	60
CACGGAGCCGCTCTCG	alt_455_RC	0	0	0	0	0	0	0	0	0	0
GTACGTGCCAGCTTCG	alt_455_RC	52	33	58	57	26	50	35	43	37	40
TTCGATATTTCGGTAG	alt_5403_reverse	32	42	42	36	45	30	52	34	60	35
ATACTGGATTCGTATG	alt_5403_reverse	16	27	43	9	31	38	41	16	32	10
GACACGTATCCCATAT	alt_5403_reverse	28	51	36	23	42	48	50	27	45	18
TCTGAAGCCGGTCATT	alt_5403_reverse	27	78	39	43	72	36	55	36	60	36
GTTCGTGTTTTGCCGC	alt_5403_reverse	63	121	85	62	128	65	117	59	121	69
GTGTATGCTTCCCTGG	alt_5403_reverse	11	24	18	23	14	16	23	14	20	16
CCAGCTACCTATGGCA	alt_5403_reverse	36	184	45	53	244	36	220	32	240	41
TTGAACATGTCTGGAA	alt_5403_reverse	52	78	56	46	74	56	84	55	96	47
GAAGTCTGATCTGCCT	ref_5403_reverse	19	26	22	15	38	13	32	21	30	23
GGAGAACGTTGAGTGT	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCAGCACATATTT	alt_5403_reverse	40	71	49	47	85	31	92	47	88	40
CACATTGGACAAAATG	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
CTATGAATTTTAGAGG	alt_5403_reverse	30	52	28	25	58	28	64	29	61	22
CTGGATGTCTAACAAT	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
ATTCATGGGGGGTATG	alt_5403_reverse	26	41	25	22	50	23	29	22	42	20
TAATGGATTAGATGAA	alt_5403_reverse	60	74	75	54	78	58	93	49	90	40
ATGCCTGACGGTTATG	alt_5403_reverse	27	45	27	21	36	21	33	20	43	24
ACAGTATCTCACTACT	alt_5403_reverse	22	21	16	13	29	21	34	16	38	11
GTGTTGTTAGAGCTGG	alt_5403_reverse	13	22	23	16	16	13	17	12	29	21
TAGTTTCTCCCGGATC	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCTACTCTACGCT	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTTCCGGCCTCCT	alt_5403_reverse	38	105	52	43	115	37	116	34	111	25
GTCTCGCTGAGCCTTA	alt_5403_reverse	15	67	15	17	62	15	79	12	75	9
ATTTGTTGTATGCGAG	alt_5403_reverse	9	15	13	10	12	10	23	10	17	14
TATCCGTTTTGGGCCG	alt_5403_reverse	13	16	12	15	32	13	17	12	22	6
ATCTACCGTACCTTAC	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
AGCAGTCATTCCCTTG	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTTTATCGTGGAC	alt_5403_reverse	49	101	53	49	62	46	86	37	84	64
TGCATCTCTTCGCGGT	alt_5403_reverse	29	59	46	42	63	34	56	28	75	45
CCCCGAGTTTTGCATC	alt_5403_reverse	10	19	11	15	20	17	23	7	24	16
ATAAGCCTTCCCTGAC	alt_5403_reverse	12	12	6	17	17	3	18	7	15	7
GTTTGCTCTTGCTATT	alt_5403_reverse	19	23	19	11	24	8	26	15	17	14
TCGGGTAATACACCGT	alt_5403_reverse	13	11	12	6	10	19	13	7	16	17
TTTAGGGTATGATTTC	alt_5403_reverse	99	191	148	107	146	105	179	113	193	89
TCGATCTTGAGATGGT	alt_5403_reverse	37	70	59	47	50	57	84	51	93	45
AGTTTGATCATTGAAT	alt_5403_reverse	5	2	6	4	16	5	11	7	8	3
AACCAATCTTTTTGGC	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCCAGTAACTTAT	alt_5403_reverse	20	33	14	27	46	32	29	18	37	16
CGATGCGGTTACCCGA	alt_5403_reverse	58	120	65	68	109	53	128	59	133	48
ACGGTCAGGGTGCTCG	alt_5403_reverse	33	48	29	26	46	31	41	27	58	33
CTGGGACAACCGGTTC	alt_5403_reverse	35	45	37	29	43	24	51	17	49	25
CAGCGTAATAAACTTT	alt_5403_reverse	7	15	11	10	24	10	14	9	25	12
ACCGTAAGGACTTGCG	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
GTATCTGTTCATACTA	alt_5403_reverse	39	60	32	29	70	36	74	48	64	39
CTCCAGCTGATGACTG	alt_5403_reverse	8	12	5	8	6	6	10	7	19	4
GACACTTTTTCTGCTT	alt_5403_reverse	1	1	5	2	3	1	2	0	1	2
CCAATTTACGCTCGGA	alt_5403_reverse	4	10	7	3	11	3	10	3	5	5
GCTGCCTATCTCACGT	alt_5403_reverse	85	174	113	95	195	99	202	100	199	90
AAGCAGAAGCGTAAGT	alt_5403_reverse	32	66	52	38	55	26	59	37	78	37
TAGTAGCCTTTTTTGT	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
TGACTTACTGCGAATT	alt_5403_reverse	12	27	12	12	17	11	20	6	25	12
GGTCCATGAGAGTAGT	alt_5403_reverse	172	313	202	159	249	162	301	160	307	141
TGTTTCTCCGACCGTC	alt_5403_reverse	149	238	158	135	201	125	235	110	246	114
CAATACAGCGTTATCT	alt_5403_reverse	36	56	43	39	55	35	58	31	54	28
TTGACCGCGCTCCCTG	alt_5403_reverse	15	16	22	10	17	14	23	16	26	8
GCTGTGACTTTTCGGT	alt_5403_reverse	10	13	4	8	14	5	14	4	13	10
CTCTGGTTTGCTGACC	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCCCACATGAATT	alt_5403_reverse	7	10	10	5	21	8	7	4	15	7
ACATTACCACGAGTGG	alt_5403_reverse	18	24	31	13	26	14	23	15	18	14
CCAATTGATATGCGTG	alt_5403_reverse	0	0	0	0	0	0	0	0	0	0
GATGTTTTCCACCTAT	ref_5783_new	7	10	7	9	6	12	12	2	13	4
CTTCTTACTCAGGCTT	ref_5783_new	0	0	0	0	0	0	0	0	0	0
CCGTCCTGCAGCGAAT	ref_5783_new	6	23	7	6	15	3	28	10	32	10
GCATTGGTCATACGGT	ref_5783_new	20	37	24	29	45	25	42	23	54	20
CGTGCAATATCCACGT	ref_5783_new	0	0	0	0	0	0	0	0	0	0
TGTGTCTCAGTTTTAT	ref_5783_new	5	12	6	5	3	4	10	4	5	2
AAGGCTTAAGGGGTTT	ref_5783_new	0	0	0	0	0	0	0	0	0	0
CTGCTACCCTGTCCTC	ref_5783_new	20	40	38	20	53	24	45	22	56	20
GTTCTGTTACATTGGT	ref_5783_new	6	1	0	4	2	1	7	3	11	1
ACTCTCAGTGCTTGTA	ref_5783_new	0	0	0	0	0	0	0	0	0	0
CTTCCCGTCCTCGCTG	ref_5783_new	0	0	0	0	0	0	0	0	0	0
GGGCTGATAGCACAGC	ref_5783_new	0	0	0	0	0	0	0	0	0	0
TAAGATTCCTCTATTA	ref_5783_new	7	14	14	12	14	6	19	9	21	9
CGACCTACCTTCGTGC	ref_5783_new	9	47	11	4	52	10	48	8	54	4
ACCTGTAGATTCTCCG	ref_5783_new	13	22	16	17	14	12	17	11	12	10
AGTCATAACCGGTTCG	ref_5783_new	49	113	69	57	124	52	115	52	117	49
CCATTTTGGTCGAGAG	ref_5783_new	2	32	2	5	23	4	22	6	23	2
GCCAAGGTGCTTAAGC	ref_5783_new	21	40	15	8	33	17	35	19	35	12
AATTAAATAAGGCCAT	ref_5783_new	32	43	25	18	49	23	36	20	47	31
CATAACTCACTTGTCC	ref_5783_new	1	8	3	4	10	3	9	4	12	2
TCTATTCCTTCATTTG	ref_5783_new	8	16	12	14	19	6	17	6	18	6
ACCTGGCGTTCACCAT	ref_5783_new	21	43	32	16	35	15	48	21	39	19
ACGGCCAAAGGTCATC	ref_5783_new	0	0	0	0	0	0	0	0	0	0
ATTGGATCTTCTATGT	ref_5783_new	4	7	4	3	12	4	9	6	9	4
GATCATCTTTTGTCTT	ref_5783_new	0	0	0	0	0	0	0	0	0	0
TCATATATTTAACATT	ref_5783_new	50	85	58	51	100	41	80	40	75	53
ATTTAAATTTAGGTAC	ref_5783_new	0	0	0	0	0	0	0	0	0	0
CTGCATCTACTTCACA	ref_5783_new	13	27	11	7	20	6	34	20	25	8
TTGTACTATGTTAGGG	ref_5783_new	10	20	7	11	12	8	20	6	20	6
ATTATGTTTTCAATAT	ref_5783_new	0	0	0	0	0	0	0	0	0	0
CGTATTGAATTTCAAT	ref_5783_new	28	39	27	23	40	30	51	17	34	17
CTCCTGCTATTGTTTA	ref_5783_new	5	10	12	4	10	5	15	5	11	3
CGGTTTTTCTTAAAAT	ref_5783_new	4	8	8	7	8	7	16	4	9	3
GCACCGTCGGGGTTTT	ref_5783_new	4	6	2	0	5	2	11	8	7	3
AAGGTGTTATTCGCGC	ref_5783_new	44	72	46	47	77	55	90	37	77	50
GTTTGTATCTCAATTA	ref_5783_new	17	23	13	11	34	8	24	12	29	13
GTCGCCGGCTGGCAAG	ref_5783_new	3	6	4	5	5	6	4	8	12	4
CACTCACACGTTCGCT	ref_5783_new	7	55	11	14	52	4	69	9	53	6
GGTGTACATCCCAGGA	ref_5783_new	9	11	15	15	10	5	17	12	21	16
CAGATTTCACACGGGA	ref_5783_new	13	46	23	21	40	16	28	16	54	14
TATGCTTCTTGGGTAA	ref_5783_new	0	0	0	0	0	0	0	0	0	0
TTGTAACGTCAATGCG	ref_5783_new	21	35	28	19	49	20	27	17	61	14
CGTAACCCGTTGGATT	ref_5783_new	0	0	0	0	0	0	0	0	0	0
TCGGCTACTCATTGCT	ref_5783_new	63	107	55	54	153	47	118	56	123	46
TGTATACAGTTTCCTC	ref_5783_new	0	0	0	0	0	0	0	0	0	0
TCACGAAGTCGGTACC	ref_5783_new	0	0	0	0	0	0	0	0	0	0
AAATAGCCTTTCTCTT	ref_5783_new	33	90	49	61	96	42	83	45	85	43
GCTATCTCTGTCCTAA	ref_5783_new	104	175	125	113	172	105	206	93	220	96
TTTCTGGCATTAATTT	ref_5783_new	15	29	24	9	37	18	33	15	28	13
GGAATTGAGATTCATT	ref_5783_new	5	3	2	2	4	2	4	1	6	1
GTGTTATGGCCTTCTG	alt_5783_new	79	191	122	94	158	88	175	86	171	67
GTGTCAAGCCCTCTTA	ref_5783_new	8	22	5	2	14	5	19	2	14	4
GGGGGGTAACTTTGGA	ref_5783_new	4	7	1	3	7	1	3	4	5	0
AGACGCCATCTGATAG	ref_5783_new	9	11	6	5	19	2	10	8	14	10
CGCTGGGGCGAAACTA	ref_5783_new	0	0	0	0	0	0	0	0	0	0
TTTTTGGTTCAGTACC	ref_5783_new	4	12	11	7	7	5	5	3	14	4
CCGCAAACCGCTAATC	ref_5783_new	22	61	25	16	35	20	41	22	56	16
TACCTTCATTTCCTGC	ref_5783_new	61	83	61	51	120	54	111	54	106	56
GTCTCCTGTAAATGTC	ref_5783_new	14	19	14	11	24	14	26	10	18	9
CAGGTGTATTATGATC	ref_5783_new	19	62	36	26	77	19	72	31	70	15
TTTAGAGGGGCGTGAC	ref_5783_new	6	7	0	1	0	1	6	0	2	0
TGCGCTCAGCTACTCG	ref_5783_new	18	33	26	26	24	29	42	17	29	12
TTAAACTATCTGCGTG	ref_5783_new	27	43	26	17	24	18	30	13	36	15
GAACTCCTCCGTTTGG	alt_5783_new	28	79	18	14	84	15	84	17	83	15
TTAATTGGGTGTATCG	ref_5783_new	16	46	24	22	39	28	50	16	44	22
GCCTCCAAATCCTGTT	ref_5783_new	0	0	0	0	0	0	0	0	0	0
CTCGGCCATCCCCTTA	ref_5783_new	5	27	9	7	19	5	13	4	11	6
CTCACCTATTCACTTA	ref_5783_new	11	36	20	17	47	15	34	19	43	10
TTTTGATCCATGTTTG	ref_5783_new	0	0	0	0	0	0	0	0	0	0
CTGTTTCAAGGAGTGG	ref_5783_new	16	35	29	25	58	22	59	23	61	19
AACTGCGGACACATTA	ref_5783_new	0	1	0	0	2	1	3	0	1	1
CTTACTATAGGTCATT	ref_5783_new	37	60	42	46	78	36	80	33	75	35
TGCAACTTGCCTGCAT	ref_5783_new	5	30	11	13	32	13	40	9	28	16
CTAAGTCTACTGCTTG	ref_5783_new	1	10	3	5	8	3	8	1	7	4
TTGTTCCCGCATGTGG	ref_5783_new	6	14	7	8	22	5	16	4	19	6
GCGTATGGTAAGGGTT	ref_5783_new	19	24	22	10	24	19	36	15	30	12
ACAGCAAGGCGAACGT	ref_5783_new	41	105	62	67	106	51	135	49	119	64
GCTTGTCGCGGCTGGG	ref_5783_new	39	101	39	50	107	35	89	51	108	24
CGTATAATATTAAGAC	ref_5783_new	0	0	0	0	0	0	0	0	0	0
ATCAACAGTTACTACC	ref_5783_new	27	39	23	18	40	23	45	24	40	22
TGCAAGTTCCATGCAA	ref_5783_new	4	20	5	6	17	7	11	7	13	5
ATTGTTGCCTAGTCAA	ref_5783_new	9	11	8	14	17	8	15	8	12	9
GTTCGTTGCCATCAGA	alt_1416_fdr	3	2	6	6	5	4	9	12	1	1
TTTAACTTTCGAAGCG	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
CTCACTTTGATGCGCA	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTCCAGACGGCC	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCCGGAAGATTCT	alt_1416_fdr	6	17	12	8	7	10	20	15	31	18
ATCTCTTACGGACCGC	alt_1416_fdr	42	30	43	42	40	37	37	37	26	16
TCATTGTTCGTTTCCG	alt_1416_fdr	151	104	181	150	106	128	136	150	144	149
TTCTTCTGGAGGTAAT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
AGGATACGAGGTGTAT	alt_1416_fdr	62	47	108	65	62	58	54	72	60	64
CATAGGCCCCGTGTTG	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
ACGTGGTCTATATAGT	alt_1416_fdr	54	51	69	63	59	57	50	48	54	37
CCTGAAACCGTCAGGG	alt_1416_fdr	16	12	12	18	13	12	12	12	12	11
CTCGGACGACATTTTA	alt_1416_fdr	83	43	131	96	53	119	52	87	56	84
TTAATACCGCAAGTCC	alt_1416_fdr	16	15	17	25	23	19	23	18	20	15
GGCCTCTCTGTCCACT	alt_1416_fdr	41	41	51	42	63	45	50	59	49	38
CGAATGTATGGCGTTG	alt_1416_fdr	24	18	26	24	13	19	12	25	17	25
GTCAAGCAGAACCCAG	alt_1416_fdr	11	6	13	12	13	6	6	7	4	13
CCTTTCACAAGTCTGC	alt_1416_fdr	8	5	6	5	6	3	4	7	10	3
TCCTTTTGCTTTTAAG	alt_1416_fdr	11	9	14	6	16	14	10	15	14	11
CATCTAGGGTAATCTA	alt_1416_fdr	46	35	50	57	43	50	34	42	20	35
CTCAGGGATCGGTGGC	alt_1416_fdr	13	23	30	15	30	16	27	24	26	17
CTTTGAACTTGTCAGG	alt_1416_fdr	58	56	77	52	69	49	56	53	67	60
GAATTCTGCCTTGACC	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTCGCCGATTCCG	alt_1416_fdr	8	7	10	13	13	16	5	12	8	12
CTGGATACAGATGGTG	alt_1416_fdr	212	179	255	223	170	217	172	184	175	208
TTTAATACTTTACATG	alt_1416_fdr	17	24	23	29	13	12	21	16	24	25
CCGCACTTACTTGGTG	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TAAGAGTATTCTTGCG	alt_1416_fdr	51	43	56	48	54	55	57	49	36	33
GGGAGATCTTACAGTT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
ACGCGACACGAGTATA	alt_1416_fdr	92	68	86	69	87	77	58	76	69	74
TTTCCTTTTTTCATTG	alt_1416_fdr	85	73	99	86	54	98	80	86	79	62
TATATTGATCTATGTT	alt_1416_fdr	64	48	59	49	42	42	40	50	49	54
TTTTATCCCCGGATGT	alt_1416_fdr	3	2	2	2	2	3	5	3	0	1
GGTGCGTCCTTGGCTC	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTTCTCACTGTG	alt_1416_fdr	57	48	102	70	57	92	56	79	77	65
GCTTGACTTTTCCTGC	ref_1416_fdr	228	208	287	239	235	230	246	199	197	176
TTCCCTCAAATCTCAC	alt_1416_fdr	107	68	101	111	86	107	63	84	81	91
ATACTCGTTGCTGGAT	alt_1416_fdr	5	6	4	3	15	4	6	6	2	5
AGGCTGACCCAGACCC	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGTCTCTTGCTGG	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TACATACTTGTTTTCT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TACAGAGTTTGTGTAC	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGCATTTTCCGGT	alt_1416_fdr	28	25	29	18	15	28	26	23	9	22
ACTATGCTACGGTCTT	alt_1416_fdr	29	19	43	20	27	28	33	27	32	23
ACCTACTGACTTATTA	alt_1416_fdr	5	7	7	4	4	4	4	6	3	1
TTAGTCTTGATATCAA	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
CAATTATTGCATTTCC	alt_1416_fdr	228	220	297	271	225	242	222	224	216	234
TTAGTTTTTCTCTTTC	alt_1416_fdr	89	51	116	91	65	97	52	98	52	84
ATTGTCCTTTTTACTT	alt_1416_fdr	135	76	185	135	72	117	87	122	102	99
ATCTTTCGCCCCCGGC	alt_1416_fdr	0	4	1	4	8	0	6	1	9	1
TAATATTAAAGCATAA	alt_1416_fdr	13	12	12	13	8	18	9	13	13	13
CTAATTTAGCTATGCT	alt_1416_fdr	119	120	125	102	101	103	111	103	128	93
TGGTACAGCCTACGTT	alt_1416_fdr	7	10	10	14	6	8	10	16	4	13
GCTTTCTATATCGTTC	alt_1416_fdr	17	19	18	35	23	32	24	22	28	16
AGCCTTTGATAGATAC	alt_1416_fdr	1	2	1	2	0	0	2	0	5	1
TCTGAACACGCGATTC	alt_1416_fdr	31	44	64	51	31	41	48	39	26	31
TTCTAACTCCCCATTT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
GGCAACACTTTGTTGA	alt_1416_fdr	39	25	51	39	45	44	49	36	46	50
GGTTATCCTTAAGGAA	alt_1416_fdr	14	18	19	20	11	9	7	22	11	9
CGACGAATTTAGATAG	alt_1416_fdr	309	221	362	309	214	275	260	312	243	302
CGGTTTGCTAGTTAGG	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCCCATATGGTAT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAGTATTATTTAT	alt_1416_fdr	137	93	174	174	117	142	120	144	120	120
TGTGTTTGGACCTCGG	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TGAATCAAGGTTCCGT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCTCTAGGACGCG	alt_1416_fdr	92	61	114	78	76	81	65	82	70	87
TCGTTAAATCTGTCCT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTGCCTGCCCCCG	alt_1416_fdr	8	16	15	14	6	17	8	8	5	11
GCTCAACCTACCTTTT	alt_1416_fdr	21	67	13	12	51	14	67	14	61	12
TGATTCCAGTCACGCG	alt_1416_fdr	17	13	32	28	27	18	33	13	18	37
ATTTCCGAATTCCAGG	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TTAACCGTCTGGTTGT	alt_1416_fdr	65	51	86	54	51	53	68	49	67	53
CCTAAGTCGCATCTCA	ref_1416_fdr	131	143	164	128	152	124	147	119	177	116
GCTGTTATAGCCAAAT	alt_1416_fdr	19	28	29	22	10	28	18	27	24	17
CTTGTTCCTGTCACTG	alt_1416_fdr	105	89	128	101	96	101	99	100	81	104
CCCCTGAGTTTGTTGC	alt_1416_fdr	132	93	152	131	123	118	115	133	113	108
ATTGCTTATCCCCATC	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
AGTAGGGCAGACGTTA	alt_1416_fdr	9	2	4	4	2	3	6	15	7	4
AATCCCGTTACCAGCA	alt_1416_fdr	83	46	87	74	67	74	82	77	66	83
TGTACCCTAGGACACC	alt_1416_fdr	77	81	82	87	87	53	77	62	65	71
TTAGCGTGTCAGAATT	alt_1416_fdr	0	0	0	0	0	0	0	0	0	0
TCATTGCGAGGGAAAT	alt_1416_fdr	29	26	31	16	19	21	19	16	28	26
CATCCATCCATGGTTA	alt_1416_fdr	4	28	3	4	30	3	21	4	27	6
TGCGGTTGGCTCTTCC	ref_1416_fdr	5	6	7	3	1	2	2	9	5	7
ATCAGGCTATACAACA	alt_1416_fdr	14	7	19	18	17	20	17	13	15	20
AGCCGAGGTGCGACAG	alt_1416_fdr	6	12	10	9	10	9	8	10	12	3
CGGTCTTCCCTGCAGC	alt_1416_fdr	6	14	11	7	15	10	18	13	18	5
CGCCGTACGTGGGTTT	alt_1416_fdr	21	14	18	26	23	26	16	21	31	25
GCATTGGATCAATTCC	alt_1416_fdr	10	4	8	6	3	8	4	8	5	7
GGGGCACAATGATCCG	ref_1416_fdr	25	33	43	23	31	37	31	44	41	33
CTAGATAGTAGTCACA	ref_5876_new	0	0	0	0	0	0	0	0	0	0
AAATGACGATGGTGTT	ref_5876_new	166	133	189	187	147	149	143	144	148	141
TTTGGTGGCCGTCTAG	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GTCGGCCGTCCGGCTA	ref_5876_new	233	131	252	209	174	220	145	169	180	193
ATCCGCAGTGGGCATA	ref_5876_new	15	26	20	25	22	15	15	25	27	9
TTTCTTAGCTCAACTT	ref_5876_new	0	0	0	0	0	0	0	0	0	0
CGCCATCCCTTCTGTT	ref_5876_new	0	0	0	0	0	0	0	0	0	0
ACGGGATCTCTGTTCA	ref_5876_new	7	3	11	18	8	8	10	12	16	7
TCCAATACTCACGCTT	ref_5876_new	0	0	0	0	0	0	0	0	0	0
CGTATCCCGATTTTTA	ref_5876_new	59	55	69	63	65	53	55	66	64	64
GGCTTCGCGCAACACT	ref_5876_new	31	30	35	50	31	42	43	22	34	34
AGAGTCATGCTATAAC	ref_5876_new	63	66	122	71	68	64	83	82	70	63
GGTATGCATGTTTACT	ref_5876_new	0	0	0	0	0	0	0	0	0	0
AGATAGTGGTAGTTTT	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GGCCTAAGGTACTTTT	ref_5876_new	163	88	179	186	115	145	97	155	111	126
CCCAACGGACTGTTAG	ref_5876_new	58	38	41	33	39	35	29	39	44	29
GATAGTGGCGCACTTT	ref_5876_new	191	167	237	226	136	214	164	184	185	173
TAGACCCGTCTCGTTT	ref_5876_new	3	5	4	2	10	6	10	5	3	6
AGGGTACATTCAGATA	ref_5876_new	29	14	32	35	29	25	22	35	35	22
CCCTCCTGATCCGCCC	ref_5876_new	29	37	49	51	35	32	39	38	51	51
AGTCACGTCGGCCGTG	ref_5876_new	51	48	50	41	42	38	38	45	52	44
ACATCACTGTTGCGGT	alt_5876_new	163	106	182	169	112	162	87	151	100	151
CTTCCGATAAAGTACC	ref_5876_new	94	66	110	103	54	101	56	83	64	87
CTTCCTGGGTTGAGTA	ref_5876_new	47	32	53	59	55	36	31	43	40	48
AAACATCTCGATTAAA	alt_5876_new	44	30	49	47	29	47	32	40	30	15
ATATTTGTGACGTTGA	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GTGCACAGAGGGGTAA	ref_5876_new	0	0	0	0	0	0	0	0	0	0
TGGACTAATGCAGTCA	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GGGACTCGCTTCCTTC	ref_5876_new	0	0	0	0	0	0	0	0	0	0
CGCTGGTGCTACCCTT	ref_5876_new	69	80	112	87	74	73	94	85	80	69
TTTTTGAAGACCACAG	ref_5876_new	8	4	9	7	5	4	5	3	8	5
TTGCCTTCATACTGTC	ref_5876_new	68	53	83	61	43	53	70	50	71	50
CGGGGGTGTGGGGGGC	ref_5876_new	1	0	0	3	0	0	0	1	0	1
AGCCTCGAAGCAACCC	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GTGTGGCATTATCCCT	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GTTAGTGAATGTTGTG	ref_5876_new	22	17	26	30	17	21	24	23	26	22
GCCCAGATTTGTTCGT	ref_5876_new	46	36	62	58	36	38	37	49	54	23
AAGCCACGCCTCCGTT	alt_5876_new	75	63	114	122	74	81	75	69	74	70
CCGTCGGCGCCTCTAG	ref_5876_new	10	20	13	8	16	14	26	8	31	8
TCCTGTGGTATCTAAA	ref_5876_new	60	30	75	58	54	59	48	69	46	58
GCTCGTCAATTCTTGA	ref_5876_new	85	87	111	80	96	81	103	75	104	81
CCCAAGTACTGCTGTT	ref_5876_new	64	46	67	74	53	67	64	65	48	61
GTTGTACTTCTACCCG	ref_5876_new	0	5	0	1	5	1	5	1	4	1
ACTTGGTCATACATTG	ref_5876_new	152	144	185	162	121	133	147	164	163	163
AGCGTACATCTTTAAG	ref_5876_new	24	14	23	14	11	16	15	19	15	21
GTTCCTTGGCATGCTA	ref_5876_new	49	28	46	42	25	25	48	29	28	43
TATTGACACGCCAGGA	ref_5876_new	0	0	0	0	0	0	0	0	0	0
TAGCTGCCAGGAACCT	alt_5876_new	8	6	11	2	6	5	7	7	7	10
TCGGAAAAATGACAGG	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GTCCCGTTTCCCCACT	ref_5876_new	157	117	151	141	120	111	109	143	128	118
GAATGTACGTTGTGCG	ref_5876_new	19	21	39	22	16	26	18	20	18	26
GTGAGCTATCGTGCCC	ref_5876_new	52	39	81	77	52	53	40	60	54	52
GACGGCCCGTACGAGT	ref_5876_new	8	7	24	25	11	17	4	12	6	13
TTCAGGGCACGTTGTC	ref_5876_new	0	0	0	0	0	0	0	0	0	0
TTGATCGCATAGGTTG	ref_5876_new	103	84	127	130	89	103	117	108	111	100
ACCTCGACTCGCGTTG	ref_5876_new	0	0	0	0	0	0	0	0	0	0
CTCTGGCATCCCTTCC	ref_5876_new	41	32	44	39	23	39	37	43	37	21
CTCTGTAACTTGTGAA	ref_5876_new	0	0	0	0	0	0	0	0	0	0
CACTAATATGTTTAGA	ref_5876_new	52	25	72	62	35	32	37	38	34	50
CTGTCGTGGGAGTGTG	ref_5876_new	277	159	304	250	207	221	204	209	214	211
GTAGAGAAGTCACCCC	ref_5876_new	0	0	0	0	0	0	0	0	0	0
AAATAATGTAACCAGT	ref_5876_new	13	8	27	13	9	10	8	15	5	11
TGGTTCATCTGCAGTT	ref_5876_new	23	39	42	37	28	29	30	35	27	18
TGTCCCATTGGTCATC	ref_5876_new	69	49	80	58	60	71	60	54	53	58
CCTATACTGGATTAAG	ref_5876_new	0	0	0	0	0	0	0	0	0	0
TCATTCTTTGAGTGTG	ref_5876_new	93	83	117	97	71	87	70	99	102	84
TACTGGTTAGCAAGGC	ref_5876_new	0	0	0	0	0	0	0	0	0	0
GAAGTCGACATATAAT	ref_5876_new	32	28	65	41	43	56	51	44	39	37
CTGTCCAGAGTCTGCC	ref_5876_new	8	2	13	9	9	7	9	4	3	9
ATCTCCGTATCGAGCA	ref_5876_new	15	5	11	12	6	6	9	7	14	7
ATTGCCTATTTAGCCT	ref_5553_reverse	21	11	24	26	15	23	10	29	13	23
CCTAGTGGGGCACATT	ref_5553_reverse	38	17	55	34	20	26	21	31	17	24
ATGGCTACTACACACT	ref_5553_reverse	10	11	12	9	8	10	7	21	14	9
ATCTTGTGTTTGTCTA	ref_5553_reverse	41	31	64	47	32	47	35	49	30	47
CTCGTACCCTGAAGCA	ref_5553_reverse	146	77	160	143	67	143	76	124	69	133
GTCGCATGTCGTGCCT	ref_5553_reverse	9	2	12	7	3	14	6	8	6	7
TTCATCAGATCACCTC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTTGGTTTGGAGC	ref_5553_reverse	21	17	28	23	18	21	18	26	15	21
GTGGTACTCCGTATAC	ref_5553_reverse	16	12	6	6	15	7	11	6	16	8
TTGCTCTATGTGTCTT	ref_5553_reverse	3	3	14	11	4	8	2	6	4	9
CACCTACGGACTCAGT	ref_5553_reverse	50	37	54	44	37	50	42	32	39	34
TCAAGCGTCGTCGTTC	ref_5553_reverse	49	30	60	56	39	55	35	55	38	59
CATGCCGCGTTGATTT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCTCCCGAGGGCA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTCTGGATATTTA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GAATTTGCAGACCACC	ref_5553_reverse	26	12	39	38	10	32	13	24	19	27
CAGGGATCTGTCTCCG	ref_5553_reverse	10	11	15	10	10	15	7	21	15	18
TTTTCTTAACTGATCA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ACACTATGTAGTCACG	ref_5553_reverse	1	0	0	0	0	0	0	0	0	0
TTTTATTAAGCGGTCT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CTAGAGTCTACCTTGG	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TATCTTTGGGAGGGGC	ref_5553_reverse	27	12	30	38	22	23	11	34	21	21
GTTGTACTCTAGCCGC	ref_5553_reverse	114	59	135	127	74	80	75	106	65	103
TCAACGGTTTTATCTA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ACGTAACATCGAAGAA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CTACTCCAGGCGGCTT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAATTCTAAGTAT	ref_5553_reverse	84	29	83	71	32	59	33	45	39	57
TGGGCATCCGTATTAG	ref_5553_reverse	524	300	666	533	296	508	283	469	286	427
ACAAGATAGACCTTAT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGTCGCCTTTCCC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CAAGCGGCATTTTCTG	ref_5553_reverse	99	59	118	94	53	107	51	92	55	97
TGTCTGCCATGTCACG	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCAATCGGCTCGA	ref_5553_reverse	56	36	73	48	26	67	35	57	41	34
TTAAAGCTTCATAAAA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TCGTACTCGCTGTGTA	ref_5553_reverse	38	22	47	36	14	37	23	40	18	14
CCTCGCACACGTCCGA	ref_5553_reverse	11	10	13	12	12	16	4	12	9	8
ATAAAGGCCACCGTCG	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATGAATTAGTACCGAT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TGTCAGAAGGCCTTTG	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTGACATCTTCTG	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CAGTAATTTATGGGTC	ref_5553_reverse	0	0	0	1	0	1	0	0	0	0
CAGCATCATGTTGTTC	ref_5553_reverse	15	26	24	13	10	15	23	5	20	14
GCTCAACGTAGAGCAA	ref_5553_reverse	19	10	14	22	14	15	12	16	16	23
TCAGTTTAACACAACA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GACGTCGTGATCCTTT	ref_5553_reverse	15	5	8	8	3	17	5	4	2	7
TTTCCACTTTAAAAGT	ref_5553_reverse	27	16	19	13	8	14	14	11	22	27
GAGTAAGTGACTCATA	ref_5553_reverse	69	48	73	79	40	61	38	62	43	71
CTCTTGCTTCCGTCGC	ref_5553_reverse	497	299	552	485	311	447	316	404	307	421
CCTCATTGAAGTGATC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGACCGCATGGAT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CCTCAAAAACGACCAG	ref_5553_reverse	40	22	22	44	17	36	22	35	13	30
GGCTTTTAACGTAGCA	ref_5553_reverse	27	18	51	45	22	44	12	32	20	46
GAGCCCTTTTTAATTC	ref_5553_reverse	280	139	306	291	117	265	156	265	142	241
CACTTAACCGCACAGT	ref_5553_reverse	4	2	2	7	6	5	3	5	4	7
CGTACTGGTTAACTCC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GGTCAAGCGAGTCGCC	ref_5553_reverse	47	31	67	52	33	63	27	47	29	51
TGCCACCTGTCGTTAA	ref_5553_reverse	4	36	2	8	30	6	32	9	26	6
CATTAGCATGCGTCAT	ref_5553_reverse	111	79	166	136	66	124	80	121	70	124
TCCTAAGTGTGCTTTT	ref_5553_reverse	14	12	23	15	9	14	7	17	9	17
CACTTACCAGGTCTTT	ref_5553_reverse	29	23	55	35	36	30	22	44	27	35
TGGTATGGCTTGTGAT	ref_5553_reverse	68	38	122	75	40	94	44	81	65	96
GTCACCGCTATCCGGA	ref_5553_reverse	6	2	5	6	10	11	10	3	5	3
CTGGGGCCTTCTCTTA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCCAGATTTTAGG	ref_5553_reverse	262	118	314	258	174	238	143	216	163	210
CCCTCCCTGCGCTCTT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTAGCATCGTCT	ref_5553_reverse	176	72	195	202	88	169	89	177	103	171
TTTTGGATGCTTGTTG	ref_5553_reverse	24	16	31	24	16	18	15	22	17	21
CGCCCCCGTAATGTTA	ref_5553_reverse	44	37	63	60	33	30	33	55	30	58
TCCTAATAGAAACTCA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCTCATTGGAGTG	ref_5553_reverse	68	38	109	60	33	63	52	76	47	64
GAGGGCTGCTGCGTGT	ref_5553_reverse	98	53	150	103	65	110	58	111	73	105
CATTGACGCTGCTTGC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CAGGACACGGGGCCAG	ref_5553_reverse	178	100	207	183	91	174	98	185	122	169
GGTCACCTGGCATCGG	ref_5553_reverse	18	8	25	34	25	31	19	17	21	19
TATACGGTTATATCGC	ref_5553_reverse	113	54	132	102	47	97	46	82	48	86
AGGGCAGCGGGTTCGA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGCATATACTTCA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGGATGTTTTGTG	ref_5553_reverse	2	2	4	4	1	9	6	4	0	6
TGAGTTCATCGGGCTC	ref_5553_reverse	78	50	90	87	50	83	39	50	43	82
GTTGGTGTTTTGTGCT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CCCCATTAGAGTACAG	ref_5553_reverse	18	14	17	13	6	17	9	17	8	11
GCTTGTATACATAGCC	ref_5553_reverse	93	59	85	69	39	54	46	63	26	77
CATAGCTCTGGACTAA	ref_5553_reverse	111	73	141	144	72	110	69	107	105	94
ACTTATTGTCCTCCAC	ref_5553_reverse	165	68	176	168	61	160	69	139	77	143
GGTCCCCAGTTTATTA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATGCGTAGTTCTTGGC	ref_5553_reverse	2	1	2	3	3	3	3	0	1	1
CTTGCTGTAATCTTCT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GAATGCAGTTCGTAAA	ref_5553_reverse	83	38	96	81	33	79	45	81	28	74
CTAATTTTGATGCCCC	ref_5553_reverse	30	20	46	44	18	38	9	31	17	24
ATTCTTGTTGAAATTG	ref_5553_reverse	74	34	78	65	33	46	30	61	36	58
TATGGTCGGCGTCGCA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTGTTCTAAACAT	ref_5553_reverse	22	11	25	22	14	21	15	16	14	17
GTGACATCCGTTTTTC	ref_5553_reverse	37	21	49	47	24	50	24	49	31	47
TCCCTTTCTCTCGCGC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
AGACGTGCTTTACCTT	ref_5553_reverse	159	63	223	185	83	153	100	180	92	162
CACTTGCTATATATCT	ref_5553_reverse	181	72	193	152	74	162	58	159	84	135
ATTTGTAAGTGTGCAT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGTCCTGATTCGG	ref_5553_reverse	90	43	103	86	48	70	46	82	59	71
TCCGTTTAGGTTTACT	ref_5553_reverse	47	17	48	53	19	32	29	41	19	43
ACTGGTATCTATAGGG	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ACATTTGATATGATCA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CACATCACCCCCGCCA	ref_5553_reverse	15	13	9	15	16	14	12	19	12	13
AATCCAATGGCCGCAA	ref_5553_reverse	39	24	74	51	16	43	20	55	13	61
CTCTCAGTCGTGGCGA	ref_5553_reverse	30	19	40	39	23	30	18	26	33	39
GCACGCATCGGGATTA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
CTATTTTTGGCAGAAC	ref_5553_reverse	35	23	41	33	18	28	25	21	27	26
GCAGCCATATCGTATA	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TATATTCTTCGTTTGA	ref_5553_reverse	1	2	3	7	1	1	1	5	0	2
CACATTTTTGAACTGG	ref_5553_reverse	40	29	53	38	23	40	22	30	24	50
TTGTTAGACACGGGTC	ref_5553_reverse	8	10	21	17	11	10	11	13	13	6
ACGCGAACACGTTTTT	ref_5553_reverse	11	4	22	25	13	14	9	16	10	16
CGACGCACTTGCATGT	ref_5553_reverse	107	56	102	107	63	100	39	114	41	101
TGCGAATGCTTTTCCC	ref_5553_reverse	4	11	5	4	11	2	10	3	11	4
CAGTTCAGCTATCCTC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCAAATCGCTGTT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTAAGATTATAGG	ref_5553_reverse	60	24	57	40	25	52	14	50	26	32
CTACGTCTCGGGTCAT	ref_5553_reverse	87	54	110	89	44	74	37	70	53	86
CGGTGATTATATTAAA	ref_5553_reverse	4	5	7	2	6	6	6	9	4	6
GCCTCACCTATCCCGC	ref_5553_reverse	4	1	6	7	3	6	2	8	6	5
CTCTTCCATCTTTGCC	ref_5553_reverse	10	24	10	11	10	12	14	14	20	24
ATGTGAGGCCAGCCTT	ref_5553_reverse	190	107	248	206	114	185	134	163	121	203
TGATGCCTTTTAAGGA	ref_5553_reverse	28	15	30	23	16	21	8	15	11	25
CATTAGGCCGGTGCGC	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GCAGATTCCAATCCCC	ref_5553_reverse	51	46	74	80	54	64	50	60	47	62
GAAGATGCGTGTGAGT	ref_5553_reverse	109	69	150	112	56	100	85	115	72	101
CCGCGTAGCTAGGCAC	ref_5553_reverse	114	51	143	105	49	94	62	91	84	94
ACCGTCGGGTGCGTCG	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCATCCAGCGTAA	ref_5553_reverse	52	54	65	90	31	53	29	67	46	77
CACTTCGACTGCCCCT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGAATGTGCATCC	ref_5553_reverse	35	29	39	60	22	31	18	24	19	28
GTGGGAGACAGTTTTC	ref_5553_reverse	174	105	198	202	87	182	85	169	107	150
GTTAGGTGATACCATC	ref_5553_reverse	73	37	92	83	36	76	50	69	44	71
GTTATCAAGCTTGTAT	ref_5553_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGGTTTGGGTATA	ref_5553_reverse	34	21	49	46	13	30	13	49	19	36
TCTATCAGTGGTTGCA	ref_5553_reverse	36	19	32	28	19	32	17	33	27	25
TACATCTTATGATCGA	alt_5774_new	2	0	0	1	1	0	1	0	2	1
GCATCATGCACACTAG	alt_5774_new	1	0	1	0	0	1	3	2	2	3
GATACGATTCATTGTT	alt_5774_new	8	10	5	3	11	3	11	3	6	9
CCGTTTACTGGTGTCC	alt_5774_new	0	0	0	0	0	0	0	0	0	0
GGTGACCTGTTCCTTG	alt_5774_new	36	75	48	53	60	40	79	47	62	35
ATGGGGCTCAATAACA	alt_5774_new	13	17	21	11	18	17	14	11	14	13
CCACTCCTACTCGACT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TCTGTGAAGGTAGAAA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TCACCTAGTATGTGTG	alt_5774_new	13	19	17	14	19	16	19	11	24	16
CAGCGTAGATTATTAA	alt_5774_new	21	43	22	28	30	23	45	23	40	21
TCGTGAAGTCGTGATG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CACCGGAGACACGTAT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TTAACTGACATAGATT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CCATAGGATGATTAGA	alt_5774_new	26	26	36	23	21	31	23	28	28	17
AACCTTCGTCGGATGT	alt_5774_new	66	106	46	51	97	40	81	50	82	49
ACGTGAGCACTCTTAG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TAACTTCATGTACTCT	alt_5774_new	0	0	3	2	2	3	1	2	0	0
GAACTCTTGACATATG	alt_5774_new	19	23	25	23	22	14	21	24	25	16
CGTGTACTCTATAATT	alt_5774_new	13	17	10	7	22	8	19	8	17	11
GGGTGCCATACGTTCG	alt_5774_new	22	32	17	19	33	19	34	22	30	22
TAAGACGTCGCTTTCT	alt_5774_new	42	31	38	28	31	40	36	21	36	27
TACGTGGCCGTCCGCG	alt_5774_new	46	49	52	46	55	55	69	54	44	45
ATTTCTGGCCTACGGA	alt_5774_new	36	52	68	43	47	39	44	22	63	40
TTCAGAGCGTTTCTAG	alt_5774_new	62	92	75	58	75	59	89	65	82	61
AAGGTCCTAGGATTCG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TCAAGCCCTAAATCAT	alt_5774_new	12	19	12	24	29	20	32	13	16	11
CAGGAAGGCGAACGAT	alt_5774_new	248	300	270	219	360	212	344	221	361	206
CACTGGAAGTTGAACG	alt_5774_new	38	33	46	37	38	35	40	24	33	32
GCAGATTCGCCGTGTA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TATCTAGGTCCCCCGA	alt_5774_new	59	93	62	43	66	49	73	50	104	37
ACGCGACGCTTCGATA	alt_5774_new	11	8	8	8	9	8	14	6	9	11
ATTAGCCGTCGTTAGT	alt_5774_new	28	71	50	44	74	32	73	40	64	40
AAGGGTGGCAGCAGAA	alt_5774_new	10	6	7	5	7	10	6	9	8	6
TATTGATCGTTAGCAC	alt_5774_new	0	0	0	0	0	0	0	0	0	0
GAATTTTCTACTATCC	alt_5774_new	11	27	11	7	16	13	9	6	13	9
TAGCTCCTAGATTCAG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CTACAGTTTCCTACGG	alt_5774_new	3	2	1	4	3	0	8	2	0	1
CTGTCTTACATTACTG	alt_5774_new	53	50	50	49	55	37	69	39	85	47
GCGCTTTTTCACCCGT	alt_5774_new	1	4	4	4	5	2	2	0	2	1
TTGCTACTCTGTGTTT	alt_5774_new	11	22	22	15	15	7	19	11	27	10
GGGTATCCGTATGCCT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CGCCCCATTATTGTTC	alt_5774_new	27	21	27	16	18	14	23	25	27	21
TTGTAAGTGTTGGCGT	alt_5774_new	35	37	26	20	37	27	26	26	50	35
ACCTCCATCCGCGGTC	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TAGATGCTAGTTTGAG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TGAATGTAACAGAACC	alt_5774_new	3	2	5	5	7	2	6	3	1	3
GCCAGGACCTTTTGCG	alt_5774_new	26	26	33	20	37	28	35	21	47	32
CCACGACTTTCAAGTT	alt_5774_new	48	73	45	48	88	35	73	55	81	35
TAGTCGCCTTGTTTTA	alt_5774_new	17	10	7	15	10	11	21	7	18	12
CTATAATCGCTTGTAT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
AACTATCGGGCTGTCC	alt_5774_new	13	16	12	12	18	18	26	14	10	11
CTTGTACCGAATCGCA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TTTCTTGGTAGAGTGA	alt_5774_new	4	16	9	4	8	8	9	9	9	4
AGTATATTGTTTGGTA	alt_5774_new	57	82	69	84	77	68	76	64	82	68
CAGTGGCTACAGCCAT	alt_5774_new	3	7	1	3	1	1	2	4	6	2
GCGTGCCAAAAAATTG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CGGTATAATGGTTAGA	alt_5774_new	18	41	41	24	40	36	32	38	55	26
ATTCCGAGAACGAGCA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
GGCTAGGCCAGTGTTT	alt_5774_new	8	25	18	11	19	14	15	16	15	8
GTCTGTCCTAGCTTAG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
AGGAACGGCCTTGCAA	alt_5774_new	10	7	10	7	15	5	8	8	8	4
AGCAAGGATGCACTCC	alt_5774_new	5	48	5	8	41	10	54	7	53	11
TCTCGCTTTTCATTGC	alt_5774_new	1	1	3	1	2	0	1	0	1	0
GCGCTCTAACGAAAGA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CCTAGCTCATCTCCGC	alt_5774_new	28	103	34	37	111	21	115	33	93	31
ATGCTGGTTTCGTCGC	alt_5774_new	15	18	20	14	19	8	19	11	30	12
CCGGACTTACTTGGCT	alt_5774_new	6	12	4	3	7	5	13	5	12	4
CTACCGTTCCCTGAGA	alt_5774_new	3	8	5	0	5	0	4	4	3	4
CTATCTAGACCAGTTT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TGCCGTTTTCAGGTTT	alt_5774_new	114	168	161	134	154	133	190	133	200	126
ATGAAGATTATATGTC	alt_5774_new	3	5	1	6	2	2	5	1	3	4
ATCTTGTTCGCGCGGT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CATTGGTTTTGCTGGC	alt_5774_new	40	61	46	31	56	33	42	43	47	38
AGCTGTCGGCTGGCGA	alt_5774_new	8	13	12	11	15	7	10	8	17	10
TACCTTTTGAATTGGT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTTCCAGGGGG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
GCGAAGCCTAGATCCA	alt_5774_new	6	7	11	5	15	10	14	11	10	6
AGACTCCGCGGTGTGT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CTCCGTGCGTTTGCGG	alt_5774_new	27	38	18	34	30	26	24	24	29	25
GGGCTTGGCGTATTCC	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CTCCGTCCTGCATATT	alt_5774_new	5	4	2	3	3	6	4	2	6	2
ATTTCTGAGCCACGGG	alt_5774_new	35	54	60	40	46	34	76	34	79	45
CGACCCTGTCATACGG	alt_5774_new	38	46	39	48	58	41	45	47	45	34
TATATGCCCCGTTGTC	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TAAGTAACACGTTCCT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
GTCAATGCTCTCTTTT	alt_5774_new	16	21	17	21	25	20	23	12	16	16
CATCCTTATGGTCACG	alt_5774_new	45	47	48	32	49	32	49	43	48	45
ACTTCTCCTAAATCTC	alt_5774_new	15	22	12	15	13	11	31	12	27	13
GCGCGCAATTTTTCCC	alt_5774_new	18	49	15	19	46	15	57	12	54	22
CTGACTGTAATGTAAA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
GCAAATTGAGGTTATA	alt_5774_new	5	8	9	12	7	14	19	11	12	9
TCATGACGCCAATATG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CCATATAATGCCTGTT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TCCAGGCCTAAGAATA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
ACAATGTATGACATTT	alt_5774_new	10	2	10	9	22	4	7	6	9	10
CGCAGGCTTTGCGGTT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CAGACGCCTTTACGAG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
ATGTGCAAGTTCCCCA	alt_5774_new	22	24	27	25	18	17	24	16	38	23
AAATTTTTATCCCTTG	alt_5774_new	21	31	28	27	29	28	24	29	20	26
GTCCGTCCATCTACTC	alt_5774_new	11	14	13	13	22	17	26	14	26	7
TCGTTCACAAGCGGAT	alt_5774_new	28	25	39	24	29	20	19	20	27	20
GAATGGGTCCGGTTGA	alt_5774_new	10	8	9	8	15	9	13	8	14	12
CCTTCTCTGGGCATGT	alt_5774_new	9	15	12	13	12	15	9	10	15	10
ATCCAGGGTCGTATTC	alt_5774_new	14	28	12	16	16	19	22	8	23	11
TTGCACGTACATTGGG	alt_5774_new	161	213	166	165	196	149	201	147	190	127
AGAGTACACCGCACCG	alt_5774_new	1	3	1	3	4	3	5	3	9	3
TGGCCCAATGATTTTC	alt_5774_new	30	23	32	13	27	32	39	22	39	30
CCCCCATTACTACCGT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
ACTGTCACTTCGGGTT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TCCCGGATTGGTCCAC	alt_5774_new	26	34	29	33	37	24	29	22	53	24
CTCCTAGGGCTATTTA	alt_5774_new	88	136	81	71	110	58	111	52	141	52
GGTAATCTTTTAGTCA	alt_5774_new	5	2	2	2	7	2	5	2	7	3
CATAGTAAGTGAGAAC	alt_5774_new	12	16	9	11	9	10	11	10	21	12
TTTCGTAGGTTTATAT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
ATCAGACGCTGGTTCA	alt_5774_new	136	216	164	145	201	121	218	139	246	134
GCCGCAGACATTCTTC	alt_5774_new	2	10	7	11	4	8	10	3	8	7
TCTTTCTTCGAGCGAT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TCCTATTTCTGATTGG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TATCGCGCGGATCGGT	alt_5774_new	8	21	15	7	9	7	7	11	9	22
ACATTCCGGTGTACCG	alt_5774_new	89	121	77	74	112	59	129	73	135	73
TTAATTGTACGCTCTA	alt_5774_new	0	0	0	0	0	0	0	0	0	0
ATAAAAACCTTCCGGA	alt_5774_new	11	18	9	8	14	6	15	8	22	8
CTTCAATCAGCAATCG	alt_5774_new	5	6	3	4	11	4	10	8	13	7
CTTTTATTCTGACGTT	alt_5774_new	34	55	32	43	38	29	56	22	50	24
TCATATGTCGCCTCCT	alt_5774_new	192	223	287	242	249	221	232	201	248	215
GTTTCTTTAGTCTTGG	alt_5774_new	1	11	8	6	4	5	18	6	10	8
ATTTTCATTGAGCCCA	alt_5774_new	9	6	9	8	13	1	2	9	7	0
AACCTTAGCTATTATG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TTCAACTTTATTATGT	alt_5774_new	27	29	14	22	23	10	17	17	21	14
GTAAGCTTCATTTTCA	alt_5774_new	26	24	26	23	23	22	34	22	27	25
CATCGCCATATTAACC	alt_5774_new	0	0	0	0	0	0	0	0	0	0
ATGCACGTACATTGGG	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TACAAGTGTTCTTGGT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TCTTCGTAAAACCATG	alt_5774_new	7	8	11	9	20	11	14	12	16	11
TAGACGAATGTTTTTT	alt_5774_new	94	117	123	106	134	105	124	93	139	68
CTTGAGAATGGTGGCG	alt_5774_new	10	6	13	16	14	4	13	11	6	9
TACACGCATCTGCGCT	alt_5774_new	4	21	4	12	15	6	17	4	14	5
TCACTTTAAATCTAGG	alt_5774_new	21	10	8	12	13	12	10	9	11	5
GCATCTCTTAATTACT	alt_5774_new	99	115	93	104	107	87	121	85	137	83
TGAGTAAATTCTCAGT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TACGTCAAGCATTTAA	alt_5774_new	25	34	36	13	28	19	51	24	39	17
GGATTGGCTGACCCTC	alt_5774_new	14	6	6	9	9	3	1	11	10	7
TAAAACTTCATTGCAC	alt_5774_new	87	114	95	73	118	79	102	78	104	71
CCTTGACCCTGGCCAC	alt_5774_new	4	11	15	8	14	8	11	9	9	6
GGCATCAAGCACCCTT	alt_5774_new	20	13	17	23	21	13	17	11	18	14
TTCATTCCATAGGGCA	alt_5774_new	17	29	30	19	27	27	44	22	37	17
TGGGTCAAACGAACCT	alt_5774_new	21	31	28	22	34	20	26	18	38	13
AACATAAATAGCATCT	alt_5774_new	19	14	24	17	13	14	18	24	17	16
TAAGCAAATTTAAGTT	alt_5774_new	31	39	22	33	39	23	43	24	47	20
GTTATTGTTCAGTTAT	alt_5774_new	104	139	120	111	183	110	157	118	171	99
GGGATGGGGTATATCG	alt_5774_new	20	15	15	12	15	16	15	12	17	7
CGGCGCTTTATTATTA	alt_5774_new	39	55	48	48	49	35	60	25	60	30
CCGGTTCTCAACGCTC	alt_5774_new	0	0	0	0	0	0	0	0	0	0
TACGGTGGTCGGCTCG	alt_5774_new	84	80	94	79	71	97	101	64	110	74
TCCGAGACTTTAGGGT	alt_5774_new	5	8	6	6	14	8	8	4	9	4
GTGATCCTGAAACCCT	alt_5774_new	0	0	0	0	0	0	0	0	0	0
CAACGTTAATGGCGCA	alt_5774_new	28	47	57	46	49	42	46	20	38	41
TGCATTACTCGACTTC	alt_1819_RC	32	23	30	31	19	22	26	28	21	26
CGTACGAGCGGTAACT	alt_1819_RC	55	47	81	62	44	58	59	59	35	40
TGAGGAACCGGCATGG	ref_1819_RC	60	43	77	55	30	59	39	70	42	58
CGCTCGTATCTTCCGT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TGATATCGGAGCGTCC	alt_1819_RC	5	8	13	9	12	10	9	7	6	4
AGGTTATTTTTTTCGT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
GTTGTTGGCTTGGTCC	alt_1819_RC	9	10	5	5	9	5	8	4	9	3
GGTGAAGCAAACCATA	alt_1819_RC	8	1	9	9	8	5	8	7	4	8
ACTCTGGCTCAGCATT	alt_1819_RC	13	2	14	12	13	22	16	14	9	13
GGACTCATGCTACCGT	alt_1819_RC	68	54	90	76	57	67	58	82	58	70
TCTTCTGTGGGCTGCT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
CCTCTATCCTTACTTT	alt_1819_RC	44	35	47	39	28	38	34	40	34	42
GGGTACTTCATCTAAT	alt_1819_RC	40	28	60	62	45	29	32	44	26	33
ATTAGGTTATATCAAG	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
TTGCGAATAGTACGAT	alt_1819_RC	12	13	18	21	11	15	10	10	18	13
GGCATTAAAATGAAAG	alt_1819_RC	6	5	9	4	2	3	2	7	4	7
CCAGTTCGAGTACTTT	alt_1819_RC	26	28	25	34	21	15	14	20	21	26
TGAAGTTCTGCCAGCA	alt_1819_RC	10	14	17	8	11	5	6	7	10	9
TTCTTATCCTTTGTAG	alt_1819_RC	30	29	40	38	21	27	29	27	30	27
ATATTTGTCTGTCCGG	alt_1819_RC	17	11	16	20	10	17	28	22	18	23
CAATATTTTTTATGTA	alt_1819_RC	160	141	175	163	131	169	140	150	120	132
GACCCGGACTTGGCCT	alt_1819_RC	13	16	12	13	18	20	22	12	13	12
GTCTTGCTTTCTAACG	alt_1819_RC	17	12	16	9	21	27	17	19	29	9
CGTTCTGTCCTTTTTT	alt_1819_RC	52	34	60	42	38	43	31	41	36	37
CGGGAAGGACGGTACA	ref_1819_RC	81	74	100	89	68	78	73	62	75	74
ATGCGTTTCCTTGGGT	alt_1819_RC	92	87	101	74	74	91	94	78	82	83
TATATACACGAACCGT	alt_1819_RC	13	8	15	16	10	12	15	15	11	13
TGCACTTAAGCTATAA	ref_1819_RC	11	12	5	6	12	7	12	11	6	9
TATTTGCTTGTTTATC	alt_1819_RC	85	74	110	86	61	91	80	73	92	81
TCGTGTACTCTCTACT	alt_1819_RC	6	12	12	6	17	17	22	11	16	11
CCTTGCTTGTATCAAG	alt_1819_RC	62	43	64	52	47	39	57	65	59	62
AAGTATGAGTGTAATA	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGATTCGGTCAT	alt_1819_RC	38	31	50	46	38	35	22	41	23	27
CTTGCCCTGGTATCTA	alt_1819_RC	19	7	23	8	18	16	15	22	15	10
CGTCGTTTCACATCCT	alt_1819_RC	7	6	8	11	12	8	9	13	3	15
GTCTTGTTTGTCAGCT	alt_1819_RC	1	7	6	8	3	8	5	7	8	11
CCTGAAATCGGTCAGC	alt_1819_RC	24	36	28	22	39	22	30	20	42	23
GCTGAATTCCTAGTGG	alt_1819_RC	20	17	22	32	22	24	24	15	28	21
GTGTAAGTGTGAATAA	alt_1819_RC	12	20	13	10	12	14	16	8	18	11
AGTCCGCTATCCTTCA	alt_1819_RC	3	3	6	3	1	2	0	2	2	4
TAACTCATTAGGGGCA	alt_1819_RC	2	1	8	7	0	8	6	1	3	3
CTCTCTGGACCGTCGC	alt_1819_RC	125	74	122	111	97	95	105	103	97	89
ATAGGTACAGTTCAGC	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
AGGCTTGATTTTACAA	alt_1819_RC	52	52	64	60	48	59	59	70	40	59
TTATATCATCCTAGCT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
ATTGTTGTAAGCGCGC	alt_1819_RC	2	0	1	0	0	3	1	0	0	1
TGGCTCCTTTTTCTCA	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
CGAGGCGAGGTCCAGC	alt_1819_RC	11	16	13	10	3	14	6	13	11	16
ATCGCTTGGGCTACTC	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
TATGACCACGCTCCGT	alt_1819_RC	38	34	50	37	45	37	41	24	31	30
AACAACGTTCGTGCCG	alt_1819_RC	28	19	29	24	35	20	28	22	25	25
TCATGCGTACCGTAAC	alt_1819_RC	19	30	27	18	35	20	18	36	23	20
GTGTGTCCAAGCAATC	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
AATCCGATTAGCGTGG	alt_1819_RC	62	62	98	86	67	79	52	71	70	69
ATGTTTGTTCGAGTTG	ref_1819_RC	105	119	114	94	114	106	126	121	136	88
CATCCCTCTGCCTATT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
TCTTTATCTACGCGGC	alt_1819_RC	37	25	44	40	36	23	28	35	30	42
TGACACTTTCTCGCCA	alt_1819_RC	3	7	7	7	1	4	7	2	2	3
AGCATCCTCTTGGTTG	alt_1819_RC	15	16	17	13	14	18	21	16	10	16
CCCGCCGTCTAGTGTG	alt_1819_RC	12	18	19	20	13	12	19	13	10	10
TAAGTAACTCGTGGGC	alt_1819_RC	131	104	162	132	87	101	95	116	88	104
CCTTTGCCAGACAAGC	alt_1819_RC	54	39	66	56	36	49	61	50	54	53
TATAGCCGCCCTTGCG	alt_1819_RC	49	42	57	41	33	44	38	44	43	45
AATCAGGCCTGCGGAA	alt_1819_RC	29	28	30	21	26	26	29	25	27	23
ATTACCCTTCTCTATT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
TTTGCGATTAGCGGGG	alt_1819_RC	5	2	4	4	1	3	7	5	6	4
TGACAGAACGGCTTCG	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
CCCGCCTGTGACGAGT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
AGGTGATATTGCTGTT	alt_1819_RC	28	28	37	35	26	39	32	40	30	27
GCAACCAAGTCAATTC	alt_1819_RC	65	84	86	77	73	70	65	62	90	60
TCGCTCATATGACGCA	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
TCCTTCAGGGACCCCA	alt_1819_RC	3	4	2	8	3	2	3	1	2	6
TCGGCTTAGGCCAGCA	alt_1819_RC	37	25	56	41	26	47	29	52	31	38
TTTTCGTAACGGAACT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
GTTTCCTGTTCCGAAT	alt_1819_RC	26	21	23	14	25	28	25	27	14	22
CTTTAGCCAAGAATTC	alt_1819_RC	69	44	83	70	52	44	71	50	40	50
CCTTCACCGCGTGCAT	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
TGAGAACAAGGAAACT	alt_1819_RC	24	28	20	20	12	29	25	15	23	26
CAAACAATTGGTTGGC	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
CGGTCGGTAATTCTTT	alt_1819_RC	9	3	15	12	7	8	7	12	8	3
GGTATGGGTTTCGCAC	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
ATATGCTTAGCCTGTC	alt_1819_RC	91	97	128	100	82	108	97	107	99	86
ATTCTTACGCGCTAAC	alt_1819_RC	0	0	0	0	0	0	0	0	0	0
TCTAGTAATCCTGACA	alt_1819_RC	34	21	39	36	27	33	25	39	37	28
TTCCTGTAAACACATA	alt_1819_RC	29	33	53	36	26	43	34	31	28	39
TTGCAAGCCCGTTAGA	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
GCTTGCTCGATCTGCC	alt_5201_RC	117	44	141	129	37	91	52	107	42	109
GCATCACCTATTCATT	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
TATATTGCGCGGCACA	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
TTCCCGCTCGAATGAA	alt_5201_RC	28	14	34	40	14	33	10	17	15	21
AATATGGAACTGCTCC	alt_5201_RC	107	35	147	132	50	94	45	109	37	98
CGTGTTAGACCTTATT	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
TCCTCTAATCATCGGT	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
AGGTAGCGCTTGTTGA	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
GCGGGGTTAGCCCTAA	alt_5201_RC	176	66	247	169	62	188	88	141	77	168
GGCTGGGACACACGGC	alt_5201_RC	186	73	224	194	82	167	86	202	72	155
TACTATCACGCCTACG	alt_5201_RC	16	6	23	18	7	19	2	15	10	18
GGGACGTCCCATTATA	alt_5201_RC	65	41	78	72	39	58	27	42	38	58
CCCAAGATGAAGCGAG	alt_5201_RC	222	76	310	234	90	210	80	237	89	211
CGTCCTTATCTTTAGA	alt_5201_RC	154	60	158	133	45	142	57	118	87	123
GTTATGTAGTCTCCGT	alt_5201_RC	34	22	48	51	25	40	19	41	19	26
ATTGCGGCGCCGGGAA	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
TCGCTTTCTGATTAGT	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
CGTCGTTGTCTCCCAT	alt_5201_RC	13	13	27	12	12	7	10	6	17	9
TCATGTATGGCCCCCG	alt_5201_RC	448	131	537	454	161	437	163	426	165	365
CAGTGCCTTTAAAGCC	alt_5201_RC	103	70	134	118	86	104	94	94	70	88
AGGCTTTTTTAGCACG	alt_5201_RC	19	10	23	30	10	25	9	27	10	26
CGTAGCAGCATTGCGG	alt_5201_RC	67	30	68	71	23	49	26	54	23	37
TCGTGCCTGAAGGATG	alt_5201_RC	40	7	44	36	14	33	7	27	10	37
TTACCTCCCGAATCCG	alt_5201_RC	74	28	79	69	27	84	35	78	37	80
TCACGGGCGTTTTTGG	alt_5201_RC	101	42	148	136	38	108	52	100	43	103
CTGACTGCGACGTGCT	alt_5201_RC	207	76	250	202	93	204	88	202	114	224
GCATGGATGACGGATG	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
AAATGGTATGACTCTT	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
CTCTCTACACAAAATT	alt_5201_RC	141	47	134	152	56	146	54	137	64	123
GCATGGATGACGGCTG	ref_5201_RC	508	210	593	549	209	475	237	444	243	424
GATCTCTCCTATTCCG	alt_5201_RC	175	58	210	193	55	147	77	148	54	146
CTAGTGGACCCTCGTT	alt_5201_RC	67	30	67	68	32	71	34	61	24	53
TATCGTTCCAAGCGCG	alt_5201_RC	406	160	533	491	161	373	192	386	195	394
CCGCTAAAGGCACTAG	alt_5201_RC	103	53	111	118	53	92	51	108	51	82
ATGTTCCTCTAGACCG	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
GTAGCATGCGCGTGAT	alt_5201_RC	1	0	0	1	0	0	0	1	1	0
TGAGACACATGGTGCC	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
AGACGCCTGGATTCGT	alt_5201_RC	96	32	103	84	46	87	33	81	33	72
GTCCACCCTTTCTTCG	alt_5201_RC	121	63	175	169	42	139	70	144	63	125
TTTGGCTAGTAAGGGA	alt_5201_RC	21	13	25	24	7	22	12	18	11	18
CTATTGAGTAATTGTG	alt_5201_RC	145	70	191	141	61	136	65	124	65	119
GTCGCCTTTCAGGCAA	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
ATGTACGTGAAGTATC	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTTTTAATAGCC	alt_5201_RC	73	30	108	70	39	68	25	87	39	62
ACTCGCCATGACGGGA	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
GATCACCATTGTGAGA	alt_5201_RC	147	63	150	148	67	101	62	119	59	137
TCTTTGGCTTCAGGCA	alt_5201_RC	97	43	101	95	41	107	48	103	46	91
TCTCTTTACATGTATC	alt_5201_RC	380	137	411	418	139	323	173	323	151	250
CTTGGTCGTTGATGGA	alt_5201_RC	223	87	278	248	83	251	101	218	113	233
TTGACATCACTGTAAA	alt_5201_RC	48	28	68	55	8	41	23	45	18	43
TACCGATGTACAGGGG	alt_5201_RC	32	14	47	36	15	28	19	31	14	47
TTGTTCCTCTAGACCG	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
TGTTCGGAATGCGGTG	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
TTGTACGCTTACTAGG	alt_5201_RC	96	35	100	108	50	88	52	82	46	81
TCTTTAGGGTGATCTG	alt_5201_RC	29	14	25	31	14	29	11	31	7	33
GTTTCATTCTGCACAC	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
GAACTCCTCTGGTAAG	alt_5201_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGTCCTCGAGAT	alt_5201_RC	32	19	33	48	19	39	24	64	40	35
GCCGGGCGGGTCTACC	ref_2078_reverse	23	60	26	34	55	27	74	22	70	23
GGTTTGTAGGCTCGAC	ref_2078_reverse	87	99	70	75	103	56	96	67	95	51
TTTTCGCGTCCGAGTA	ref_2078_reverse	55	63	46	42	80	57	85	43	81	46
CTTCGTTTTATGGGAA	ref_2078_reverse	26	66	28	34	45	34	50	33	60	25
TTCTCTGTCGCTCAGC	ref_2078_reverse	22	31	34	23	22	18	49	18	30	19
ACGGTTAACCTTACTC	ref_2078_reverse	77	91	69	60	109	65	119	49	126	54
CATCTCGCCATACGCC	ref_2078_reverse	27	52	40	38	52	17	66	32	67	20
CCAGTGACCTGATTTC	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
TTAGACGGTTCCTCTC	ref_2078_reverse	8	23	21	19	24	17	16	26	23	18
TAGTCCTGATTGACCC	ref_2078_reverse	0	5	2	5	5	4	7	4	2	1
AGTCAATTTAGCTTTC	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCGTCTAGAAAGA	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
TCGGACGTCGAATCAC	ref_2078_reverse	13	19	13	9	24	4	20	14	37	10
CTGTTTAGCTGTGGGC	ref_2078_reverse	33	49	60	39	45	32	55	36	45	23
GCCACAGTAATGGGAT	ref_2078_reverse	30	19	11	23	20	25	32	18	40	17
CCTGACCCTTCGGCTT	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
GCATCTTTGCCCGTGT	ref_2078_reverse	4	12	11	10	15	4	15	3	8	3
TTTGGCCTTATGAGGG	ref_2078_reverse	6	11	10	5	3	7	7	3	10	6
GAGTCTTCCCGGGTGT	ref_2078_reverse	57	87	71	49	82	48	72	49	89	50
CACTACCCCCCTCCTG	ref_2078_reverse	5	16	7	3	15	6	14	8	20	5
GAACGCGTACCAGATA	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
TCGTACCTGCTTTTTT	ref_2078_reverse	241	329	286	228	351	245	419	211	377	198
TTCCTCTCCTACGGTT	ref_2078_reverse	131	151	142	127	143	119	173	114	159	106
GGTGTAGGTTGTTCCC	ref_2078_reverse	13	20	13	9	16	11	20	6	19	14
CAATCCACAGTTGCAT	ref_2078_reverse	100	170	121	110	152	114	193	114	201	102
TGTGGTCTCGCTTGAT	ref_2078_reverse	50	51	52	39	49	35	48	38	49	35
GTAAGCACACTGAGAA	ref_2078_reverse	28	48	38	30	56	35	49	36	61	22
TCGGTTAGATGCCGTT	alt_2078_reverse	10	18	8	11	13	20	16	11	19	11
TGTTCCCGACGAGGGT	ref_2078_reverse	213	318	277	216	259	213	297	168	331	201
ATTGGTACAATATTAT	ref_2078_reverse	6	14	15	6	12	7	8	7	16	3
TGCTATTTGAGAATTT	ref_2078_reverse	14	24	13	17	23	14	30	20	33	15
ATTCTCGCTTGGCTTG	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGCTCCCATTCA	ref_2078_reverse	48	66	42	41	95	30	78	50	99	44
ACCAATCGTTTAGTAT	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTCCCATACCTGA	ref_2078_reverse	3	7	2	10	11	7	11	4	5	2
TTGGGAGACACCGAGC	ref_2078_reverse	62	91	59	47	74	56	89	44	118	45
AATCTTGAGAACTCTG	ref_2078_reverse	16	29	8	14	17	25	27	9	16	9
GATTGGCTTGGACCCA	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGTAAGGGGTATT	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
GGGGGACCTCCGAACC	ref_2078_reverse	52	78	88	71	80	64	80	61	88	48
TTGCACCCTATGGGTT	ref_2078_reverse	45	81	58	39	57	50	106	39	88	42
TTTTACAGTTGACCTT	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGGAGCAGTGCGG	alt_2078_reverse	90	113	78	103	117	98	137	85	126	81
CTTCCCGGTTCTATAT	ref_2078_reverse	16	8	10	11	9	15	8	5	19	4
CCACGTCCTAATATTC	ref_2078_reverse	7	19	9	13	7	13	20	11	14	3
GTTCAAAGTTGACCAC	ref_2078_reverse	23	32	20	38	32	16	21	17	29	16
CCATATGGTTCACGGG	ref_2078_reverse	43	48	57	50	50	40	67	42	60	38
TGAATCTCACTCACTT	ref_2078_reverse	20	30	29	22	39	18	39	27	34	15
ATCCGCCCCTCTAAAG	alt_2078_reverse	73	93	74	60	114	69	112	53	112	74
CTGTAGATACTAGGGT	ref_2078_reverse	51	73	60	61	81	54	67	52	101	46
AACGATCCCTTTTCTG	ref_2078_reverse	34	70	47	55	90	41	63	49	66	47
GCTCTTCTTTATTAGC	ref_2078_reverse	91	172	112	104	185	97	171	84	128	102
TCCCCACATGTTTTTG	ref_2078_reverse	18	35	34	41	42	28	41	22	40	20
GTGCCGAAAATCCAAT	ref_2078_reverse	18	37	12	18	26	9	19	12	27	13
GTACGTGCAAGTGGTT	ref_2078_reverse	17	16	17	20	11	14	15	12	21	9
GTACTATACGTCGCAT	ref_2078_reverse	45	71	80	44	75	49	108	53	81	25
GTCGTCCACGAGCCGG	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGTCCCGCTCAGC	ref_2078_reverse	16	30	33	26	48	17	48	29	41	24
GATCATACTGCCATTG	ref_2078_reverse	13	17	14	7	20	9	19	8	18	22
GAGCGAGGTGACTTAC	ref_2078_reverse	25	162	52	44	153	42	159	23	165	29
TAGATTACTTCCATCC	ref_2078_reverse	102	133	119	105	187	119	162	90	184	83
CTGTGCGCCTCCAACT	ref_2078_reverse	7	10	7	8	21	10	10	9	20	6
GTCCACTCCAAGGCTT	ref_2078_reverse	4	14	8	8	14	6	12	6	16	3
TAAATTTTCGATTATC	ref_2078_reverse	10	17	8	8	23	14	11	20	26	7
GGCGACGCCCTCCTTT	ref_2078_reverse	20	37	25	25	57	18	42	26	43	21
GGGCGCTCACATCGGG	ref_2078_reverse	7	10	11	10	13	5	13	11	15	10
TGACTGTCCCGGGTGT	ref_2078_reverse	20	19	14	25	32	14	31	16	31	13
AGTCCCCGAGTGTGGC	ref_2078_reverse	67	106	73	53	130	51	135	53	106	52
CGGGGGCTTGGCACTT	ref_2078_reverse	18	26	20	20	39	12	35	18	35	18
GTGTGGACATATTTTG	ref_2078_reverse	20	37	29	16	38	13	29	17	38	16
TAGTACATAGTGTTGT	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCCGTGTCATAGC	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
TTATCAGGGCCTTTCT	ref_2078_reverse	18	35	38	27	43	31	34	25	50	12
AATAAATTCATGGTGA	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGGCTCGTCTAGT	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGAGTTGGCTTCG	ref_2078_reverse	23	42	23	26	51	27	50	26	48	22
AATTTTGGGGAAGCAC	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
CGCACGCCTAGTTTTT	ref_2078_reverse	10	8	10	6	15	12	16	4	11	9
GTCTTATCCTCGTATG	ref_2078_reverse	37	67	42	40	56	24	68	28	64	32
GGGTAAGACGAAGCTT	ref_2078_reverse	111	164	160	127	167	126	186	147	184	129
GCGGCACGCGCGCCAG	ref_2078_reverse	7	15	11	13	10	8	20	6	9	10
CTTCGCTTTCGCTGAA	ref_2078_reverse	31	49	48	36	57	19	68	24	61	28
GTGAAGCCTATCTTAC	ref_2078_reverse	8	16	14	10	18	14	28	13	25	9
GAGTTCGCCCAATCGG	alt_2078_reverse	53	78	59	43	74	43	87	41	85	36
AATACACTATACTAGA	ref_2078_reverse	32	60	41	29	56	26	49	23	52	20
TGTCTCTTAAACACCG	ref_2078_reverse	31	31	33	26	47	28	40	42	62	30
AATTTCCTTAGGCAGA	alt_2078_reverse	8	3	13	11	9	6	17	5	9	6
ATTCACGAACACGAGT	ref_2078_reverse	111	169	141	152	173	140	197	134	195	135
TACGCAGTTAGGTCAG	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
CTGACTATAATTACCC	ref_2078_reverse	16	38	20	24	26	24	40	18	41	16
TGGCATTAGTTGCTGC	ref_2078_reverse	56	81	45	44	90	52	70	47	95	50
GGGAGTGCCATGAACT	ref_2078_reverse	33	38	33	33	55	42	52	26	65	36
ATCGGGCAAGGGTTCT	ref_2078_reverse	22	33	24	23	29	14	30	14	27	26
TGTCAGAATGACAAAG	ref_2078_reverse	63	108	94	86	104	71	95	75	111	60
TTTCTCTCGCCTATGG	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTGCCTTGAGGTT	ref_2078_reverse	71	96	65	54	106	54	102	57	96	70
ATGTCGGTTAATCAGC	ref_2078_reverse	28	28	25	27	31	18	34	27	32	23
CGTGAGATATCTCGAC	ref_2078_reverse	62	64	64	67	44	29	70	47	68	35
CGTTCTCTTGGTCATA	ref_2078_reverse	15	22	22	16	20	12	23	10	34	28
TTGCTTCATGCAAGCG	ref_2078_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGTATATTGATTC	ref_2078_reverse	2	7	9	3	7	6	12	1	2	4
TGGTACTGTAAGCGGC	ref_2078_reverse	47	73	55	51	74	51	74	38	85	38
GCGTTGCACGAGCTGA	ref_2078_reverse	10	11	12	4	7	0	15	5	13	5
GTAACTGAGCTGTTTC	ref_2078_reverse	66	140	97	105	96	80	125	103	129	72
CACCCGTTAAGGGCTT	ref_2078_reverse	10	14	20	16	17	10	16	12	21	12
ATGTAGCTCTTACATC	ref_2078_reverse	136	173	125	129	166	109	179	124	183	110
CAGAATACTCAAGGAT	ref_2078_reverse	18	15	22	27	37	22	36	14	24	15
AAGGCGGCGCCCACCA	ref_2078_reverse	104	156	93	96	142	80	168	104	148	69
GTCTTGGGCGGGCTTT	ref_2078_reverse	99	185	143	115	169	137	190	113	152	110
ACTTCATAGTTAGCGG	alt_2078_fdr	78	41	98	83	47	67	59	59	36	50
ATTATTCGGTGATCGC	alt_2078_fdr	126	71	192	182	75	130	104	143	112	115
GATATAAGTAGACCGA	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTGATTGCGTTTG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TACATGTCCAGCGTCT	alt_2078_fdr	46	31	44	47	25	52	23	46	23	44
TTGACTAATCTCCGTT	alt_2078_fdr	130	92	171	128	77	108	80	121	87	110
CACATGCCGACTTGGT	alt_2078_fdr	7	1	10	4	2	11	4	1	3	0
AGGTCATAATACCTCA	alt_2078_fdr	27	9	34	24	9	16	15	27	16	13
CTATGTGTTCCCGACC	alt_2078_fdr	24	26	31	32	35	22	24	19	40	18
TGCTAGTCCTCCAATA	alt_2078_fdr	1	2	1	1	0	3	0	1	0	0
CAGAACGGCCTAGGTA	ref_2078_fdr	280	413	369	359	411	334	435	294	465	288
CCCGCATGCCGCGAAG	alt_2078_fdr	58	113	77	63	88	48	101	70	117	54
TTTCGTGCTTTAACAG	ref_2078_fdr	130	268	163	181	295	150	311	134	313	114
TCACACACGGCGGACG	alt_2078_fdr	30	10	37	35	19	39	33	34	25	23
AGGTGCATCAGATCTG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTGGCACTGTAT	alt_2078_fdr	12	4	14	18	14	13	5	21	7	8
CTCCGCTCCCAATATG	alt_2078_fdr	14	34	32	22	42	17	32	35	42	28
CTGTGGCTTGATTTAA	alt_2078_fdr	0	2	1	1	0	1	0	0	1	1
ATTTTGAGATTAGCAC	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTTTCAGTGCAG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TGTAACAGTTCACCTG	alt_2078_fdr	44	42	88	58	33	51	70	48	47	45
TCGATTAATCGGGGGG	alt_2078_fdr	67	27	93	56	35	39	29	54	22	46
CTCAATGCTTACCGCT	alt_2078_fdr	56	55	101	77	68	58	64	68	78	55
GGGTCTCACGCGGGCC	alt_2078_fdr	143	82	153	158	81	124	77	128	69	132
TCCCGGGTGTATCGAA	alt_2078_fdr	23	10	27	21	12	18	7	18	16	26
GCATGAATTTTCCGTT	alt_2078_fdr	4	0	4	6	1	2	0	3	2	1
AACCACAACCATAGGT	alt_2078_fdr	107	94	107	122	83	120	73	116	80	91
GTCTAGCTATTCTAAC	alt_2078_fdr	71	71	96	85	68	80	79	74	69	80
GTGCTTCGGAGTTTGG	alt_2078_fdr	44	34	51	60	36	44	31	65	35	45
GTGTTTGTCCTGCCCG	alt_2078_fdr	216	171	255	264	142	254	128	205	163	198
TTCTTTTTCACCGGCA	alt_2078_fdr	1	3	3	2	1	1	2	1	6	0
GTCTACAGAATTCTGA	alt_2078_fdr	142	75	162	136	97	129	129	109	82	119
TCCCTTTAGTGCATCG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
CCATGAATTAGATGAA	alt_2078_fdr	33	23	28	23	22	20	26	25	20	18
ACTTCCATTAGTAGGT	alt_2078_fdr	14	8	18	14	11	15	12	18	9	9
GGAACTTATTTCACTC	alt_2078_fdr	18	16	34	26	11	15	16	26	9	14
CTCGATCGCTTTTAAA	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TGTACTCTCTTGGTGC	alt_2078_fdr	164	123	149	148	102	120	145	86	129	114
CCCAGAAGACAAGTGA	alt_2078_fdr	20	31	31	28	15	25	19	36	23	22
ACAGCCAGACCTTATC	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TTCAATACGAACGTCC	alt_2078_fdr	20	16	43	28	19	25	15	16	15	15
CCTGTAGATTTTGTCA	alt_2078_fdr	66	33	80	66	54	63	45	63	51	53
AGAACATGTGTTCGCC	alt_2078_fdr	26	16	35	31	18	37	22	22	17	30
GATCTACTGGGCTCGT	alt_2078_fdr	55	36	60	50	31	44	30	38	33	38
GTGAGTTCGTAGTTTG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
GACTGGCTAGTAAATT	alt_2078_fdr	97	82	137	132	94	100	87	95	94	93
AGGGATGGCGTGGCCT	alt_2078_fdr	48	24	60	59	37	56	17	61	27	36
CGTCGCATGTGCTTCC	alt_2078_fdr	28	51	49	39	64	31	57	44	85	48
ACGCATCGTTGGCTAA	alt_2078_fdr	44	34	65	52	30	42	23	53	31	41
AACTTGGTGGACGATT	alt_2078_fdr	128	66	168	117	77	116	76	94	82	96
GAGGTTAGTGCACGAG	alt_2078_fdr	193	129	265	271	120	222	172	202	156	192
TTGGTAAGGCCAAAGA	alt_2078_fdr	191	95	229	209	113	186	133	166	130	158
CTTTCACATGATCCTG	alt_2078_fdr	33	20	39	56	27	33	20	36	24	31
ATTGTACGCAGTTGCA	alt_2078_fdr	33	23	35	31	34	26	29	42	43	34
GAAGGGCAATCTTCAG	alt_2078_fdr	79	51	84	83	51	61	50	63	67	76
GGGGGCATTATGGTAA	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
CATGGATGTGCGCTTT	alt_2078_fdr	95	57	97	96	49	82	63	78	67	96
TTCCGCGCGAACGAGC	alt_2078_fdr	16	6	31	23	13	19	11	25	8	22
ACTCGCACCTTAATCC	alt_2078_fdr	28	33	50	43	28	35	28	32	30	37
GCGTCAGCATTGGCCT	alt_2078_fdr	97	49	101	65	37	65	43	72	52	63
ACGCAGCCTAGGTCGG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGATGTTTCGGCG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGTGCTTGAGAGA	alt_2078_fdr	60	42	83	73	48	71	45	67	47	57
CGGTTTGTGGGAAATT	alt_2078_fdr	24	15	38	34	14	23	16	22	18	34
TTTCGTCGAATAATGC	alt_2078_fdr	83	57	110	70	58	91	59	89	50	68
ATAGCGCGGTCGCCCA	alt_2078_fdr	59	47	96	89	45	83	63	67	55	79
CTGTTTCGGGTTCAGT	alt_2078_fdr	4	4	3	2	1	1	2	1	2	2
GTTATGATGCCGTGTT	alt_2078_fdr	158	114	180	155	98	145	115	180	136	145
GTATCTGCTTTTCCCA	alt_2078_fdr	38	35	69	59	23	28	25	28	39	36
AGCCACCGTGCTTTGA	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
GCACGGCAATCCCTCC	alt_2078_fdr	44	35	44	33	25	32	27	39	38	29
TTATTTAAATGGCGAC	alt_2078_fdr	44	20	55	47	22	47	17	36	21	33
GGGCACTGCAGGTGGT	alt_2078_fdr	205	142	267	258	150	186	149	199	157	186
TAAAATCAGTCTTCTG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
CTCACGATATCTCCTT	alt_2078_fdr	31	19	25	21	18	25	30	24	21	35
CTACCACGCAATGTCT	alt_2078_fdr	78	86	123	106	79	93	101	94	94	93
GGATTATGCGAACTCA	alt_2078_fdr	103	52	103	99	67	91	61	82	54	71
CCTCAATGGGATGGCG	alt_2078_fdr	28	28	45	24	39	30	32	47	20	27
GTACACCGACTGATGC	alt_2078_fdr	43	33	83	44	25	37	27	36	30	35
TGGAAGCTATTGATGG	alt_2078_fdr	75	52	97	93	55	56	39	55	38	70
TAACTAATTCAGGCTG	alt_2078_fdr	71	37	95	81	42	50	30	39	40	49
TGATTCGGCCCCGTAG	alt_2078_fdr	59	32	54	61	30	50	31	43	29	36
CCAGCGTATGCTCCTA	alt_2078_fdr	8	60	10	9	62	8	49	7	62	5
AACCTTTGCTTTACAC	alt_2078_fdr	67	53	77	61	36	68	43	55	44	55
TTACGCAAACGGACAC	alt_2078_fdr	42	34	50	61	34	44	36	44	37	37
TATCATTGCGTCGCCA	alt_2078_fdr	30	23	33	29	18	29	18	28	14	30
ACTTTTGTTTAATATT	alt_2078_fdr	168	125	228	207	120	210	108	198	116	179
ACTACTTCCTCTCTGT	alt_2078_fdr	77	68	85	83	56	66	52	82	53	62
TATCGACCGGGCGAGA	alt_2078_fdr	10	9	14	13	14	11	12	15	10	11
CACAGGGTTAGCAGTA	alt_2078_fdr	511	355	648	531	341	446	363	525	347	427
GGGTGGTCTCATCGGG	alt_2078_fdr	51	28	75	56	31	39	35	58	26	24
TCGCAATGCCCCAATG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TGGATGCTCACCATAG	alt_2078_fdr	13	13	18	18	20	14	20	17	13	12
CGCATCACAGCTCGTT	alt_2078_fdr	112	91	143	103	57	86	78	82	75	90
GGAACCAACCTGTATA	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTCTAGGGCGTGT	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTATTTGGGTTTC	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTGTTATCTGCAA	alt_2078_fdr	114	66	130	109	67	95	61	77	49	74
GAACTGAATGTGCCGG	alt_2078_fdr	156	99	196	162	89	149	96	146	105	113
AAAACTTTTCTAATAT	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
GTACAAGGGAGGGCTT	alt_2078_fdr	11	6	22	11	13	13	9	13	15	16
GGCCTTTATCTAGTTG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
TAACGTCTTGTTTCGA	alt_2078_fdr	44	20	40	47	27	28	20	19	16	34
TACTACCGGTTTCTGT	alt_2078_fdr	35	33	55	38	25	39	16	34	40	41
CTGATTTTTAAGGAGT	alt_2078_fdr	70	36	90	59	66	67	46	66	63	63
ATTACTCCAATCGGTG	alt_2078_fdr	149	122	168	150	105	143	85	136	110	143
GAAAGTTACCTTTGGG	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
CCCGACAGTTATGGTG	alt_2078_fdr	91	56	106	89	70	87	78	87	63	67
GTTGTTTGTACCGACT	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCTAGTACAGATG	ref_2078_fdr	9	15	13	13	10	13	16	11	15	7
TTTTACTGTGCACGTC	alt_2078_fdr	27	35	38	43	20	30	14	31	30	31
TTTTTCGTCTTCGGAA	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCCCGTGGTTCGT	alt_2078_fdr	26	20	32	39	31	22	31	35	31	33
ACGCAAATTCGTCTAT	alt_2078_fdr	56	41	76	69	35	48	36	59	43	44
CCATTCGTGGAACCAT	alt_2078_fdr	0	0	0	0	0	0	0	0	0	0
CCGGGCCGATAGCAAA	alt_2078_fdr	2	9	2	1	12	1	7	2	9	0
CAAATATTGGAAACAA	alt_2078_fdr	167	103	202	181	90	185	110	194	86	135
TACTAGAGTGACTTGA	ref_4925_RC	29	38	19	29	46	23	43	32	42	17
GTTTATTTGTTACAGC	ref_4925_RC	24	21	20	13	30	29	34	14	36	20
CATTAATTATACGGAC	ref_4925_RC	116	142	140	109	157	103	162	111	184	107
AAGATGTCCGTATCAT	ref_4925_RC	7	14	6	10	8	3	15	6	8	5
TCCGTGCCGTCCACCT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
AAAAAGGTTATGGACC	ref_4925_RC	59	69	71	47	62	59	73	39	59	39
GCACGCGGCGTATTCT	ref_4925_RC	49	83	73	58	55	59	90	67	83	58
TAGTATATATAAGCCG	ref_4925_RC	12	14	6	15	13	12	14	9	26	12
CCAGTTGAGATCCACG	ref_4925_RC	6	3	4	5	4	8	8	3	6	5
GGTTTATAGATCATGC	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TGCTGAATAGTAAACT	ref_4925_RC	1	0	7	3	9	5	4	4	1	6
AAAGTTACTCAAAGAG	ref_4925_RC	56	107	65	65	80	53	112	63	87	50
GCATGGGTGCTTAGAA	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
ACGCATATCATATGTT	ref_4925_RC	7	4	7	5	3	0	6	1	2	3
GCCAGCGACGTCCTGA	ref_4925_RC	4	26	11	9	20	9	25	10	25	11
ATCTCGCCTTCTTTCC	ref_4925_RC	10	20	22	22	25	11	18	11	16	11
TCAGCCCTTCCCCGTT	ref_4925_RC	30	50	38	43	41	25	43	25	31	39
AAAGACAGTTAGCGTT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
CTTCGGATAGTTAGTT	ref_4925_RC	13	22	26	24	50	22	43	22	35	15
CATCTTCCACTGGGAG	ref_4925_RC	33	20	23	37	30	26	40	29	37	29
TGTTAGCCCGTTCTGA	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
CCCTTTTTTGTCACCA	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
ATGCTCGGTATGATAG	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TCTGTTGCACACTTAA	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
GAGGGCCAACCTCATG	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
ATCGGGGGTCAGTTCC	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
CCGCTCCTTGTCCCGC	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
GTACGAGACATGGCAC	ref_4925_RC	51	98	79	94	96	64	74	67	104	65
GCATCCTTCGCACTTT	ref_4925_RC	7	14	6	8	9	8	12	11	12	5
CGTTACACGCAGCCTT	ref_4925_RC	39	58	63	44	58	45	61	42	64	34
AATTTGTTCTCAAGCT	ref_4925_RC	8	6	8	2	8	8	12	2	17	7
GCTAGGTACATCATCA	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TACGAACCAGCTGAAG	ref_4925_RC	3	11	5	3	12	6	11	7	11	2
TACTGCAACTAGCGTT	ref_4925_RC	23	29	29	21	37	31	41	28	58	32
GTTTTCGTCACCACGC	ref_4925_RC	72	69	66	67	83	54	65	44	81	48
CGTCCCAATCGCTGTG	ref_4925_RC	2	4	4	1	6	4	8	2	8	2
CTAATGGTGAACCTGT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
CCAGTCTAGAGGTGCT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
GTCCGGGAACATCTAT	ref_4925_RC	3	4	9	7	10	1	6	3	9	0
TTGTATCGCTTACTGC	ref_4925_RC	50	83	68	63	70	48	83	51	93	58
CATTTACCGTAACTTA	ref_4925_RC	50	66	62	55	66	40	83	50	66	40
CAGCTGAGCCTCGATA	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
AGGGTTAATCGCCCGC	ref_4925_RC	4	6	4	4	2	5	7	4	2	1
TTGCCAGGTACGGATT	ref_4925_RC	7	18	16	15	19	10	31	8	20	16
TATCCACGACGTCTTT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TTCGCTAAGTGGGGCG	ref_4925_RC	57	74	63	47	63	45	73	42	65	52
AAAACCTCATATTCTC	ref_4925_RC	34	64	50	53	60	43	57	41	73	44
TATATCTTCCGGCCTT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
GCCGGCGACTATTTCA	alt_4925_RC	6	8	4	3	14	3	5	1	7	5
CTGCCTAGCACTACGT	ref_4925_RC	1	6	5	1	1	2	0	4	2	2
TGGTGAGCTATCCGTG	ref_4925_RC	16	28	18	14	20	12	25	14	15	17
CATTTCGCGTCCAGAC	ref_4925_RC	9	19	7	11	10	4	8	5	6	8
GTTGTACTCTACCGCA	ref_4925_RC	12	4	7	11	10	6	17	1	14	7
TAGCATAATAAAAGCA	ref_4925_RC	25	40	39	26	41	31	47	32	43	34
GGTGGCATAAATCCTT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
AATTTGGTGAAAATCA	ref_4925_RC	13	14	16	17	14	17	25	6	27	20
TAGGAAGCACGACGGT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TCTTACTCTGTCCGAC	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TCGATCGGAATATGTC	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
CCCCAACATTAGGGCC	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
AATGGTTACCGGCTCT	ref_4925_RC	7	9	14	16	12	10	7	7	3	7
CCTATCCGGCGTTTTC	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TAACCTTTCCTCAATT	ref_4925_RC	96	99	101	85	86	86	95	93	99	65
GCCAAGGGTACTGGTC	ref_4925_RC	11	41	12	7	41	5	37	9	35	9
ACGGATGCTCGATCTA	ref_4925_RC	46	33	33	24	30	35	47	28	36	28
TCCGTAGTTGCTGCAA	ref_4925_RC	12	7	6	15	28	7	24	7	14	18
ATATACCGATTGGCAA	ref_4925_RC	59	92	76	61	87	64	77	52	108	64
AACTCCTCACTCGGTT	alt_4925_RC	77	116	119	76	140	74	175	79	115	81
TGACATCTTATTATAA	ref_4925_RC	23	19	22	18	31	14	34	19	19	16
CCGGATTCTTTCTATT	ref_4925_RC	13	28	13	16	28	16	39	14	32	15
TACCCCCTTTAAGGGA	ref_4925_RC	1	7	3	1	10	2	8	2	10	1
CTGGTTTCTGCCCGAT	ref_4925_RC	28	47	40	34	40	36	45	24	32	34
GACGTTCTGGTAGCAT	ref_4925_RC	11	26	22	16	13	20	27	8	27	16
TTCGCATCCATCGACG	ref_4925_RC	12	10	22	16	15	9	16	8	24	7
TCCATTTATTAGTGGC	ref_4925_RC	7	16	19	13	24	13	18	11	18	11
GCCGTAATTGTATTAG	ref_4925_RC	42	44	50	49	72	44	56	40	46	34
TGCTAAGGAGTGCGAC	ref_4925_RC	31	27	38	33	44	33	44	38	41	26
GTCTTTAGACCCTCAT	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
GTTCGGCATATGCCTC	ref_4925_RC	7	11	9	8	24	6	8	3	14	9
TGTATGGGGAAGCTGT	ref_4925_RC	103	133	114	96	154	98	138	92	116	82
CAATGGATTTGTCAGT	ref_4925_RC	2	3	1	1	1	1	3	6	6	1
TGGGTAAATCTGATAC	ref_4925_RC	34	43	35	25	43	30	46	24	55	21
TATGGCTCTTCCGTGA	ref_4925_RC	0	0	0	0	0	0	0	0	0	0
TCTTCATTCTTAGTAA	ref_4925_RC	8	13	15	10	3	7	8	12	10	6
GGTCCTAATTGCGGCG	ref_4925_RC	31	44	29	27	38	35	35	30	38	34
AGTACGGATAAAAGCA	ref_4925_RC	10	13	16	9	21	15	15	10	22	15
ACCTATATTTCGCTAA	ref_4925_RC	8	11	6	8	9	5	11	2	13	9
CATGAAAAAATGATTT	ref_4925_RC	16	16	24	16	18	19	26	11	21	20
TCTACCTGGTTAAGTG	ref_4925_RC	19	49	34	40	48	33	68	34	49	32
TTCTCAGGTAGTGCTA	ref_4925_RC	10	7	15	4	20	14	8	12	10	5
CGCATTCAAACCATTT	ref_4925_RC	0	1	0	1	0	0	1	0	0	0
GGTAATGTGAAACCAG	ref_4925_RC	8	18	13	5	17	14	15	19	16	11
TATACCGCACCTTGAA	ref_4925_RC	1	5	2	3	1	0	5	0	0	2
TCACCGTGTCTTTTAG	ref_4925_RC	5	40	12	9	62	10	44	9	62	13
ATATCCGAATTTTTTA	alt_3951_fdr	164	54	178	165	48	149	64	139	53	117
GCAGGTTTACCACTCT	alt_3951_fdr	15	9	40	30	17	20	21	22	19	21
CATGCAGTTCTCGCAT	alt_3951_fdr	36	14	53	38	19	39	12	45	17	28
ATGACCCTCATAGTTT	alt_3951_fdr	16	8	17	18	3	21	13	21	13	21
CCCAGGCAATGGAATG	alt_3951_fdr	14	10	12	18	7	21	15	12	9	12
CTCCATCTCTTAGTTC	alt_3951_fdr	16	38	14	18	29	25	25	13	30	16
TAGTATTCACTCCGCA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTCTACGTTGTCTTCA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCCCCAACTGTCC	alt_3951_fdr	253	115	341	264	125	255	125	238	142	250
GGTGGTCTCCATGCGG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTACACCAACTTT	alt_3951_fdr	107	70	162	119	65	123	70	123	63	101
CGAATTCCTGAGTTCT	alt_3951_fdr	73	28	86	66	23	64	29	52	29	47
TAATAGCAAGTAAATG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
ATAACCAGAGCTTTTC	alt_3951_fdr	183	98	211	187	66	176	81	138	74	160
CGAGAGGCACAATCCC	alt_3951_fdr	229	69	254	201	67	191	68	184	71	154
TGTGTTTTTTGAGTCT	alt_3951_fdr	32	15	41	31	9	33	16	25	17	24
TTTAATTAATAAGATT	alt_3951_fdr	38	10	39	41	11	31	14	37	17	32
TTACAGCAGCAGGGAT	alt_3951_fdr	25	5	27	15	5	13	10	19	7	16
TCCGGTTGTCCTATGG	alt_3951_fdr	71	40	114	98	44	86	28	86	51	84
TTAGTATGTCTTGTTC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCCATCGTCTGGGAAG	alt_3951_fdr	149	95	196	146	79	154	90	121	91	142
GTATTGTGACTCCTCA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GAGGTTCTCAAATTCA	alt_3951_fdr	57	20	66	64	17	52	24	45	27	65
TCCTAGGAGTTACCGA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGTCATCTTCGCG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTTAACCTCACA	alt_3951_fdr	127	46	143	141	61	116	48	111	57	122
CTTCACTATCTTAACT	alt_3951_fdr	17	8	36	24	19	27	13	23	12	23
CTATTCCCGGACGTCG	alt_3951_fdr	191	86	212	149	65	130	76	155	63	152
GGTACGCGGCCATACT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCGCGAGCTGTGA	alt_3951_fdr	126	62	170	172	55	150	61	127	58	123
ATGATTCTCTGAGCAC	alt_3951_fdr	45	15	33	32	9	41	17	39	17	33
CATTGATAATCTCAGC	alt_3951_fdr	197	69	219	167	67	148	59	159	71	148
TCTTTCGATTTACCGG	alt_3951_fdr	93	44	114	79	42	64	38	97	35	88
CCTACCAGTTCCGATT	alt_3951_fdr	71	113	89	80	104	61	84	70	98	67
GTCATTTCTCCTTGCT	alt_3951_fdr	167	47	170	142	71	140	71	110	65	103
AAATCCGAATTTTTTA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCGTGTTTTCGGA	ref_3951_fdr	4	6	13	15	7	9	5	8	4	2
TGCCCGCATTTGTAGT	ref_3951_fdr	117	52	149	137	66	112	54	123	55	90
CTTAATAAGTCAGAGT	alt_3951_fdr	223	108	258	214	90	208	100	192	106	179
TTTTAGAGAGTAGAAT	alt_3951_fdr	322	147	427	322	151	299	148	344	180	337
GTAGCTACTTATAGCC	alt_3951_fdr	53	11	58	62	15	47	18	45	26	42
TCTTGTCTCGGATGAT	alt_3951_fdr	225	69	259	246	84	173	79	213	73	190
CAGTAACGTACCGCAC	alt_3951_fdr	107	34	129	113	47	89	48	107	47	90
ATGCGTCGATGGCTGA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGACCGTGTCGCC	alt_3951_fdr	54	21	60	69	24	55	32	55	23	61
TCATTTTTCCCGAAAC	alt_3951_fdr	32	8	24	27	10	18	8	23	6	36
TCCAAGGAGTTACCGA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GGGCATTGCGTGCTAC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGCAAGGGCCGTC	alt_3951_fdr	286	100	346	295	103	261	89	262	76	274
CGTAGTGCTTGATGGA	alt_3951_fdr	26	14	32	31	7	33	17	31	10	22
ACCCTCTGATAGAAAA	alt_3951_fdr	8	9	16	13	11	12	8	14	5	13
GCCAAATATAATGGGG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTAGATCTTTAG	alt_3951_fdr	51	25	65	67	20	80	18	51	17	54
ATGGTGCGTGGTCTCT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGTACGGCTGTGC	alt_3951_fdr	12	11	18	5	9	5	8	9	7	9
CCCTAACCATCCATAA	alt_3951_fdr	32	24	32	31	27	35	36	38	34	27
TTTTCGTGTATTATAA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGAATGCCCCACC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCGCTCGCATGG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AAATTAGGTTTATTTG	alt_3951_fdr	108	53	150	114	52	92	53	127	38	101
GGGGTTGCTTTGGGAG	alt_3951_fdr	131	43	163	142	52	133	62	134	57	122
CCGTGCTTAGGTTGTC	alt_3951_fdr	28	8	27	35	12	26	19	28	18	28
TGTTCGCAGGAAGAAT	alt_3951_fdr	17	7	27	16	9	26	6	18	11	14
CCTGAAACGTTGGTCA	alt_3951_fdr	21	14	33	15	9	10	3	22	10	16
GGTTTCTTCGTTTCCG	alt_3951_fdr	11	4	13	14	1	13	4	7	3	12
CAAGACTGTAAGAATT	alt_3951_fdr	132	49	145	121	55	118	62	116	45	98
CAACACACTGTCGTTT	alt_3951_fdr	84	42	126	113	47	79	37	99	55	79
GTATCGATCTGCTAGT	alt_3951_fdr	34	11	49	34	19	47	16	40	22	37
GTCAACGCTTGGCAGT	alt_3951_fdr	53	21	90	63	25	71	27	81	34	58
GGAGTGTTATTCAGGG	alt_3951_fdr	72	29	107	69	29	66	21	78	32	51
GATTCGCTTGTCTGGT	alt_3951_fdr	101	37	128	109	32	93	55	97	33	85
ATTGTTTTTATTTGAT	alt_3951_fdr	124	35	143	144	27	126	30	115	30	105
AGATTCGAATGCAATC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTCCAGCTCATA	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGCAGGACTTTGT	alt_3951_fdr	93	34	104	84	33	94	42	75	40	86
TGACGCCGTTTGTTGA	ref_3951_fdr	52	59	69	59	45	43	64	32	67	46
CCCTTATCAAATCCTC	alt_3951_fdr	27	16	27	29	20	13	23	24	22	22
CCGCTACAGTAACGAC	alt_3951_fdr	12	2	15	10	3	14	6	11	2	11
TGCTTGTGGCCCTGTC	alt_3951_fdr	55	19	72	51	33	54	20	55	33	47
GTTGATGGTAGTTGCT	alt_3951_fdr	62	19	77	69	25	70	20	48	28	67
CGACAGGGCTTCCAGT	alt_3951_fdr	52	14	39	32	15	37	18	37	14	34
CTAGTTCACTATTAAG	alt_3951_fdr	12	11	45	29	12	16	8	20	14	33
CACTCATGCAAAAAAC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGCTCGATAATGG	alt_3951_fdr	47	20	72	50	25	39	38	34	28	48
TATTACAAGGCTATTC	alt_3951_fdr	22	10	59	34	11	29	10	29	14	29
CTATGGGCGCTCTGGG	alt_3951_fdr	78	28	95	68	28	71	30	73	30	56
TTTTTCCCCAGAGATT	alt_3951_fdr	91	31	90	87	24	79	25	73	28	88
AACTTTATATCAATTA	alt_3951_fdr	242	112	329	253	86	267	100	262	93	226
TACTCTCAACTGGCGC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CACAACCATTATATGG	alt_3951_fdr	77	46	113	84	22	93	37	64	48	78
TCCTAAGTGTTCGTTT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCAGGTCCATTCG	alt_3951_fdr	57	24	58	54	18	37	21	46	19	44
TTCACGTCGTCAGACC	alt_3951_fdr	38	23	71	63	31	34	30	35	32	41
ATATATCCGTACTAAC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
ATCAGCCGCTCGTGTT	alt_3951_fdr	12	8	10	13	5	5	6	13	6	14
GAGTAGACGAGACCTA	alt_3951_fdr	95	52	198	161	50	137	46	108	43	128
AACCGACCGATTTCAG	alt_3951_fdr	65	21	54	53	13	49	20	48	23	49
GGCCCAGACGAGCTCA	alt_3951_fdr	307	90	395	328	124	298	135	322	111	312
GGTGACGTACAATATC	alt_3951_fdr	444	160	587	505	174	444	178	474	180	382
ACGGCCGGATCTTGCT	alt_3951_fdr	14	18	17	7	17	9	21	10	8	10
AAGCTGATCGCGCATC	alt_3951_fdr	123	26	123	109	45	95	49	85	45	108
CATCCTAGGGTGAGGG	alt_3951_fdr	40	15	51	49	19	42	23	42	14	39
CCCATGCAATGGAATG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCATAACGGCACCTTA	alt_3951_fdr	8	3	8	8	2	6	4	3	0	5
ATCCGTTCCAAACTGT	alt_3951_fdr	30	20	42	43	15	32	30	33	14	39
CACGTAGATCTCAATG	alt_3951_fdr	96	48	101	108	38	87	49	81	40	73
TCATGGCCTAAAATGC	alt_3951_fdr	38	22	67	64	29	59	24	45	16	52
ACTCAGCCCCCCGTTG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CGCATATTTTATTTAC	alt_3951_fdr	243	102	337	315	104	306	112	291	125	246
ATTCATTCTCTAGCCC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAATATATTGTGA	alt_3951_fdr	7	4	11	9	4	8	0	10	2	2
TACTGTATGAAACCAG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCTTCTGTGCGTG	alt_3951_fdr	43	17	49	43	19	25	13	33	22	34
AAAGACAATGAGCAGC	alt_3951_fdr	38	9	42	45	10	41	22	39	14	48
GATGGGCGGCTCTTGC	alt_3951_fdr	247	78	337	249	93	258	95	228	77	208
TCAGTTTGCTTGTCAG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CGACTATTTAAATGCC	alt_3951_fdr	141	62	132	136	63	118	66	139	52	100
ACTTTTTCTGTATAGT	ref_3951_fdr	68	64	74	72	84	84	99	77	82	50
GTGATTTCCGGCATGT	alt_3951_fdr	55	30	75	72	33	62	22	62	31	66
CGTTGATCTTCGAATT	alt_3951_fdr	5	2	14	7	2	6	2	6	1	2
TCTGAGAAGTGAGCTG	alt_3951_fdr	15	5	11	16	6	19	5	8	5	15
ATACATCTTATGGCAA	alt_3951_fdr	23	6	19	16	1	20	5	13	3	13
GATGGTAATCTACCGC	ref_3951_fdr	83	21	98	66	43	78	29	100	36	85
GACGGCTACGAGTGTT	alt_3951_fdr	9	4	12	12	5	5	6	10	3	11
TTCCACTTGCGATCGA	alt_3951_fdr	80	27	87	69	20	60	25	72	24	58
GGCTACAGAATATCTC	alt_3951_fdr	185	73	235	170	81	211	82	200	68	170
GATATCCTTGTGCAGG	alt_3951_fdr	33	4	27	19	12	24	15	38	15	14
TCAATACTTTCACGGA	alt_3951_fdr	164	47	181	148	59	160	64	154	78	117
GCCCAGGCAGGCATTC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
AAAGATTAGTACGGAT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGTTTTTAAGTTG	alt_3951_fdr	34	15	68	55	18	36	16	47	11	46
TGGGCTAGTGGTTCGA	alt_3951_fdr	27	4	32	30	8	27	10	31	4	16
GCAGCGGTAAGAGAAG	alt_3951_fdr	18	13	28	26	16	19	9	36	18	19
ACACTCTTTTTTTCGG	alt_3951_fdr	17	22	16	10	16	10	14	17	20	10
TTTTCTGCCTCATTTT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CACTTATCGTACTATT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TAATTGCCATCCCAAC	alt_3951_fdr	92	27	125	122	33	95	45	110	43	91
ATCAATGGGCCAGATT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
CACTTGTACTGTCCCC	alt_3951_fdr	6	6	15	16	10	6	11	14	12	10
GATCACATAGCGTTTT	alt_3951_fdr	63	16	61	65	21	37	15	49	18	56
TGTGAATAGGTCCTAT	alt_3951_fdr	34	6	21	34	10	36	10	28	10	28
TGTTCGGAACACCTAA	alt_3951_fdr	9	6	17	22	5	16	5	25	4	14
GTACCCCGGCGCCAGG	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCTAAGTTGAAGT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTCGCGTGGGTCC	alt_3951_fdr	205	76	245	221	72	234	81	191	79	193
TAAGTTGCTAAGTTTC	alt_3951_fdr	71	37	87	88	26	82	34	72	31	63
AGTAACCTTCGCTCCT	alt_3951_fdr	59	14	68	57	19	43	9	38	22	37
TAGTTTTTAGGTACAT	alt_3951_fdr	686	250	784	652	284	605	259	603	272	562
GGGTCCTCGTTTGCCG	alt_3951_fdr	50	19	64	44	20	41	21	41	15	30
GATGTAGAGTGGCGCT	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
GACTCAGAGGCCAACC	alt_3951_fdr	46	17	64	44	11	47	15	38	19	35
ATCGTACGAATCGTGG	alt_3951_fdr	63	31	109	86	23	81	40	75	30	76
CACACCTAAGACCAGT	alt_3951_fdr	47	18	50	56	20	27	14	36	30	34
CCTGAGTTACCTCCGC	alt_3951_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTGCCGGCATGCA	alt_3951_fdr	138	38	141	149	49	126	43	120	58	117
TACCGTGTTCGCCAAG	alt_3951_fdr	27	12	52	29	6	47	12	25	16	45
ACGGACTGCTCCTCGG	alt_3951_fdr	69	20	94	78	16	75	37	63	25	55
GATCATCTCCAAGAAA	alt_3951_fdr	43	20	53	46	13	42	22	43	19	45
CGTTAGATACGGCTTT	alt_3951_fdr	58	28	91	60	23	67	23	54	26	55
CACTAACATTATTTGT	alt_3951_fdr	33	11	64	35	11	49	22	46	12	39
AGCCTTGGCATCATCC	alt_3951_fdr	45	28	50	29	14	46	14	35	22	46
CCCGCTTACTTTTTAA	alt_3951_fdr	20	17	42	23	9	35	16	27	15	27
AGGCGTCCTTCACGTT	ref_5890_new	34	36	53	33	30	46	27	42	51	34
CTCTCACCACTATTGA	ref_5890_new	0	0	0	0	0	0	0	0	0	0
ATTCAGTGCTAAAGTC	ref_5890_new	120	96	143	121	107	115	105	101	125	103
TTTTGCTTACCACAGC	ref_5890_new	63	54	79	46	56	42	75	43	53	41
TTGCGCATTGGTACTT	ref_5890_new	33	44	48	31	21	38	33	25	30	35
GGTCCTGATTCAGATT	ref_5890_new	21	14	13	15	15	13	10	18	28	22
GTGCAGGGCGATGTAG	ref_5890_new	40	44	58	31	42	36	37	36	32	37
CATTATGGTTTTTGAC	ref_5890_new	20	5	8	7	6	6	7	10	10	13
ATCACTCATGGTCTTG	ref_5890_new	12	18	11	22	9	10	9	21	12	9
GTCGCAATTCACGTGT	ref_5890_new	17	19	34	12	20	19	16	17	16	9
TAATAGTAGCGAAAGA	ref_5890_new	36	26	49	48	31	26	31	44	28	54
TGACTGCGAGTCTTAG	ref_5890_new	10	32	36	24	32	20	36	33	34	25
GCACCGATAGGCCAAG	ref_5890_new	7	5	8	16	13	5	9	8	16	7
TGGATCTTTTTTCTGC	ref_5890_new	0	0	0	0	0	0	0	0	0	0
GATGAACACGCTATTG	ref_5890_new	13	8	17	11	10	14	3	10	7	8
ACAAAACACCTTATGA	alt_5890_new	127	107	135	145	135	114	101	128	118	127
ATCTACGGCGTGTACT	ref_5890_new	21	9	26	17	18	14	19	15	11	17
GGTTAGTCAGGTATAT	ref_5890_new	38	30	48	38	33	32	40	35	39	24
CCCATGTCCGTCCCTT	ref_5890_new	0	0	0	0	0	0	0	0	0	0
TGGATTGCCGGCCATC	ref_5890_new	120	90	139	145	125	99	127	118	119	109
ATCCGGATACCTCTGT	ref_5890_new	40	36	47	37	17	47	41	40	33	32
TGTATCTTTGTTAGCT	ref_5890_new	26	14	18	24	20	29	19	23	21	22
TTACGTACGAGTATAC	ref_5890_new	85	76	105	83	72	71	78	94	73	62
CTACGGAGTTTTTGTC	ref_5890_new	37	46	34	33	45	23	43	27	43	35
ACCAGAGATAGTATAT	ref_5890_new	54	56	53	42	55	39	68	42	54	34
GGCGAGTCGTTTGTGC	ref_5890_new	14	13	19	14	20	16	20	9	20	19
ATCACCATCCACGAGG	ref_5890_new	74	80	102	84	67	81	73	73	83	72
CTTTTTATTCATTATA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
TTGCACGTTGTTTGGG	ref_5920_new	130	151	161	145	163	103	193	118	183	106
TTTGGCATGTTTTTTA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
CACGTCGAGGCGTACC	ref_5920_new	9	27	9	8	23	9	17	8	33	4
GTTGGGCGGCCCTGCA	ref_5920_new	21	14	16	15	15	11	15	11	11	13
CTTCTCTTTTAGTCTG	ref_5920_new	90	119	101	90	119	72	139	85	155	72
TTACGTTCGGAAACAG	ref_5920_new	4	12	9	11	15	5	11	4	8	5
GCGCACGTCCTCGAAT	ref_5920_new	4	5	6	6	6	7	6	0	7	5
GTGTCCGTCTGTTCTT	ref_5920_new	9	14	10	9	5	6	10	9	13	5
AAAAGCGTCATTATTC	ref_5920_new	0	0	0	0	0	0	0	0	0	0
ACATATTGTCGGCTAT	ref_5920_new	0	0	0	0	0	0	0	0	0	0
TTGGTTCTTATGGCTA	ref_5920_new	67	54	62	62	80	55	72	56	80	49
CGGTCGATACCTGTGT	ref_5920_new	9	35	13	5	39	7	35	9	44	6
TTTGCGTATGGTTACC	ref_5920_new	59	59	60	53	69	53	65	49	79	38
TCCGTTAGGCCGCGAT	ref_5920_new	99	123	140	108	149	131	132	111	160	127
CCCTCCCTTATCCGTA	ref_5920_new	42	58	53	35	63	27	55	34	65	38
GAGTTTGCTTACTTGT	ref_5920_new	87	88	92	70	117	65	88	81	96	61
TGCCTATTATGACCGT	ref_5920_new	30	49	45	37	52	31	43	39	49	40
CGTTGGAGGGAGTTAT	ref_5920_new	45	46	39	27	40	28	39	40	36	33
TACAAGCTTTAACTGC	ref_5920_new	19	28	28	10	16	15	25	22	23	11
ACAGGTAGTACTCGAT	ref_5920_new	102	104	138	95	130	99	113	108	120	97
ATATTCAGTACCTGTA	ref_5920_new	16	16	14	13	18	9	18	19	28	14
TAGCGCTACACATTCA	ref_5920_new	11	17	20	16	14	15	12	10	21	16
CTTGAAATCACGTACA	ref_5920_new	109	113	109	92	121	80	140	71	130	99
AACCTTACTGGTGCGT	ref_5920_new	31	57	49	37	58	47	40	41	52	46
ATCGCCCCGGCCTGAG	ref_5920_new	19	24	28	31	23	29	40	16	33	28
CTGCTTCTTTTCCCAG	ref_5920_new	10	7	10	4	7	5	7	5	6	3
TCCGGTTGGGGTACAT	ref_5920_new	9	4	3	1	10	3	1	2	17	1
TAATCGCGCAAGTTCG	ref_5920_new	201	297	255	205	247	214	269	206	267	166
ATTGTTTGAATTGTCT	ref_5920_new	273	320	345	287	328	280	364	260	356	301
GCGGGTCCTGTCGTCG	ref_5920_new	4	10	12	4	11	4	7	1	2	7
AATGTGGCCCTTACCG	ref_5920_new	12	13	16	14	21	12	11	9	19	6
TTTGTCCTCGTCTTTA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
GCGCCCAACAGGCATT	ref_5920_new	18	19	35	16	23	14	18	15	22	12
TCGGAATTAAAAAGGT	ref_5920_new	40	44	58	35	51	26	59	33	43	38
TGGATATGGTATCATG	ref_5920_new	21	41	42	22	35	28	31	24	33	29
TCGTTTACAATTTCGG	ref_5920_new	0	0	0	0	0	0	0	0	0	0
TGTTCATAGCCCGCTA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
TGATTCCGATTGACAC	ref_5920_new	5	16	17	6	10	12	6	3	11	6
GCAGTATTGGTGTGAT	ref_5920_new	0	0	0	0	0	0	0	0	0	0
GTTAAGGAAAATCTTT	ref_5920_new	0	0	0	1	0	0	0	3	1	0
TACGAGTTTATTATGC	ref_5920_new	6	10	13	7	15	6	12	4	10	8
AACTGTATGAGTCTCA	ref_5920_new	12	18	12	12	16	8	8	12	8	9
TCCCATGAATTCGAGG	ref_5920_new	5	22	6	9	15	4	21	15	25	4
CTTTTGGTATTAATGA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
TGCCAGAATAATTGGG	ref_5920_new	5	5	7	3	6	4	9	6	13	3
GAGCAGTGTTAAGGTA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
GTATATCTTGAGCTGT	alt_5920_new	36	24	33	28	38	30	29	27	37	28
TCGTCTGTTTAACGTT	ref_5920_new	14	34	20	17	32	21	26	20	35	19
CAGGTTTCCTGTCAAC	ref_5920_new	12	32	13	6	22	12	17	9	20	6
ATCCGCGCCGTAGCTA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
CGAGACCAGACTAACC	ref_5920_new	245	285	335	273	315	243	329	248	295	233
GTTTGCAACCATCATT	ref_5920_new	0	0	0	0	0	0	0	0	0	0
ACTTCTTTTAGTGCGG	ref_5920_new	12	17	11	14	15	16	7	13	23	14
TGACCCGATGAGATGT	ref_5920_new	15	26	24	25	21	13	17	16	23	9
TTACGTTTAGGGGGTA	ref_5920_new	0	0	0	0	0	0	0	0	0	0
TGTTATCGTTCTATTT	ref_5920_new	57	53	73	79	79	44	56	54	66	50
CCGCGGTTTTTCGACA	ref_5920_new	70	91	61	40	97	44	92	42	90	46
GTCTTGTTTGGTATTC	ref_5920_new	6	10	7	5	9	8	2	8	5	6
GTGCTTTTCTTCTTCT	ref_5920_new	16	10	18	11	12	20	18	9	8	8
TCCGGTTTGTTACGCG	ref_5920_new	5	11	6	11	10	8	18	2	17	3
ATGCTTCGTTATAACT	ref_5920_new	36	37	54	42	46	29	50	41	36	39
TCGAAGGGCATACATT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CGGACCTGAAAAGACA	ref_2009_reverse	55	97	79	79	98	55	83	53	97	81
TCGGGGATAAGGGAGG	ref_2009_reverse	22	33	18	14	27	17	38	17	28	27
GCCAGTCCGTCTGGTC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CACCAATGTCTCCTGT	ref_2009_reverse	14	28	5	11	36	11	26	14	33	5
CCTGCTTACAGGTTTC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TATGTGGCGTCAAGAG	ref_2009_reverse	13	11	5	7	4	3	7	2	16	8
ACCACGTACATCCTTC	ref_2009_reverse	9	18	12	15	33	20	34	12	33	15
CCCCGCAGCAGAACAG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGTGCAGTGTGCT	ref_2009_reverse	29	71	43	32	74	23	60	23	79	35
GTTAGCCTGCCGCCAC	ref_2009_reverse	12	33	12	13	35	10	34	15	22	18
TATGTACTACGGTCAG	ref_2009_reverse	21	26	25	22	31	19	41	16	27	29
GACCACCTGATGTTTT	ref_2009_reverse	15	34	15	20	44	13	35	13	39	19
TATGTTGTGTAGCGCT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CAATACTTTGCGAAAA	ref_2009_reverse	6	31	22	12	29	15	15	14	17	14
ATATGTTCGCGAGCAC	ref_2009_reverse	35	45	41	33	43	27	35	20	45	33
AAATACGTTCGAACGT	ref_2009_reverse	28	53	33	40	57	34	58	34	65	35
CCACGGCATTCTTCCA	ref_2009_reverse	20	39	31	19	57	19	52	28	35	22
CACTGAACTAGGGAAT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
AGTTATCTTTGGGCGG	ref_2009_reverse	4	8	11	8	9	5	10	5	13	6
GACTGTCCTCGCACTA	ref_2009_reverse	53	93	64	50	79	47	92	44	104	49
GCGTTCCGGCCTACTG	ref_2009_reverse	14	34	14	18	46	22	35	16	27	10
TCCTCTATGAAGTGAT	ref_2009_reverse	15	28	20	22	24	16	27	14	26	16
AAGTTGATGTAATCAG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTGCAAGGGTCCCAAG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GGCGATGTTCTGCTGG	ref_2009_reverse	3	3	3	3	0	1	2	2	4	1
TGTCCAGGCGGCTCCA	ref_2009_reverse	8	9	10	8	7	9	17	10	9	4
AGTTTTGAGATTTTGG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TGATCACTTGTACGAT	alt_2009_reverse	7	13	9	6	8	8	27	9	24	13
GAATAGCTGTACATCT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CAAGCGGTCTTTCTTG	ref_2009_reverse	8	19	18	13	16	15	35	11	25	8
TCAAGGATGCATCTCA	ref_2009_reverse	34	43	42	34	63	30	49	29	58	37
TTCGACTGACTGTGCA	ref_2009_reverse	1	9	2	2	4	2	6	1	7	0
CGTATTGCTACGCTAG	ref_2009_reverse	12	18	14	11	11	7	38	15	24	5
TTCCCGTGTGCCAACC	ref_2009_reverse	34	61	41	37	85	42	72	40	65	37
TGAATGAATTACACTA	ref_2009_reverse	11	19	10	14	19	4	12	15	17	7
CGAGATCAATGGTCGG	ref_2009_reverse	0	0	0	0	2	0	1	0	0	1
TTATGTGAGCTGCTAG	ref_2009_reverse	43	53	53	34	62	33	66	45	59	45
TGCCAAATTCGCCGGT	ref_2009_reverse	229	412	284	268	414	206	428	256	423	235
AGCTTCCTTGCTAATG	ref_2009_reverse	4	3	2	1	3	2	5	2	5	2
TTGGGAAACACAGAGA	ref_2009_reverse	47	83	73	65	81	63	87	47	112	44
GAAAAAGGCTATTATA	ref_2009_reverse	3	3	1	1	3	3	3	0	2	1
CTCAACACTAAAGTTA	ref_2009_reverse	8	34	11	17	25	8	13	9	23	11
GAGGTGAGATTCCCTA	ref_2009_reverse	3	7	7	7	11	2	4	3	12	6
GCGCTTACCATGGTGA	ref_2009_reverse	30	70	56	45	59	35	90	39	85	37
GGTTGATTGTCATCGG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GACATCACGTTTCATC	ref_2009_reverse	26	31	28	18	36	21	37	30	46	23
TTCGTGTAGACTTCCA	ref_2009_reverse	55	84	52	72	65	53	90	49	80	44
AGCAATCCTTCTTAGC	ref_2009_reverse	6	8	7	10	9	7	13	11	12	9
GCGACGTGTTTTAGGT	ref_2009_reverse	47	114	91	76	116	59	104	46	119	48
ATATCTTCGTAGGCTT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GAAGCTTTTAAATGAA	ref_2009_reverse	5	5	2	2	3	1	5	1	9	2
TTCTGTGACTTTAGAT	ref_2009_reverse	8	17	4	12	11	6	17	5	19	5
TCATTTAAGCTCGAGA	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGGCCCGGGTTCT	ref_2009_reverse	17	54	31	46	43	23	56	29	44	20
CGTGACTCACGTACTT	ref_2009_reverse	7	6	2	4	13	6	9	5	6	4
AATCGACCGGCCTTGC	ref_2009_reverse	35	61	31	39	58	36	68	41	47	24
ATTCGGCGTTTTACGC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
AAGCGTTATGAGAAGG	ref_2009_reverse	22	34	24	28	38	27	44	16	44	23
GGGCTACACGTGCCTC	ref_2009_reverse	23	40	40	26	41	29	36	34	50	21
TCGAGCTTAGCACTCC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCGTCCGCGGCGG	ref_2009_reverse	4	14	2	2	5	3	9	4	8	3
TGCACGGTACGCAGGA	ref_2009_reverse	4	1	8	0	3	7	2	6	5	1
CTACAATGGCCGGAAT	ref_2009_reverse	2	3	2	6	2	5	5	7	5	1
TGCAAAAGGCTAATGG	ref_2009_reverse	72	117	95	71	113	59	120	80	101	57
ATGTTTTCCATATTTC	ref_2009_reverse	36	15	58	35	19	42	21	42	17	31
CGACGTAGTGACCAAC	ref_2009_reverse	85	157	93	72	190	68	169	67	144	76
ACCTCTCCCATTGCAC	ref_2009_reverse	49	123	55	56	130	47	109	45	107	45
TTCGGTTTTATTAGGC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCATTACACATGT	ref_2009_reverse	19	31	15	16	27	16	24	24	39	11
AACGCGGTGCAGGTTT	ref_2009_reverse	35	30	20	33	31	29	42	35	34	14
TTTTGGATTGTTGGCC	ref_2009_reverse	26	42	40	35	48	20	49	31	52	23
AGGGGTCCCTTCTTAT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCCTGTCATAATT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
ATTACCACAGCCCCTA	ref_2009_reverse	7	16	5	12	13	9	9	12	20	8
CTTCCCACAGCGGCAT	ref_2009_reverse	55	58	43	45	56	34	72	38	62	43
TTTCGGCACGTTATAT	ref_2009_reverse	5	15	11	10	8	11	12	6	12	12
ATATGTTCGCGAGCAT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GCGGACGTACGAGTCT	ref_2009_reverse	15	32	27	15	28	7	31	18	21	11
AACATATTATCGAGTA	ref_2009_reverse	41	42	22	19	44	38	46	28	44	22
AGGTGCGTGTGGTAAT	ref_2009_reverse	0	0	1	1	1	0	1	2	3	2
GACATTCTGGTAATCC	ref_2009_reverse	0	1	0	0	0	0	0	1	0	0
CATTGTGGTTAGGGTC	ref_2009_reverse	20	35	14	12	27	19	19	19	34	9
CCTCTTGCGTTTGCAA	ref_2009_reverse	7	22	14	6	15	18	17	11	23	5
AATTCTAGTGTAGTAC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
ACCTCGCTCGATATTG	ref_2009_reverse	20	34	22	13	32	12	26	9	22	20
ATCTCTTGGCTTACTG	ref_2009_reverse	59	98	69	63	106	59	103	69	86	58
TCAGGTTGCACTATCT	ref_2009_reverse	11	36	31	25	35	21	42	27	46	18
GAGGCTTCCGGCTCAT	ref_2009_reverse	30	54	36	48	39	41	53	38	45	34
CTACTCTCGTGTGAGG	ref_2009_reverse	19	20	10	6	14	8	17	12	13	11
ACCTCTTGAGGATTCC	ref_2009_reverse	46	115	45	37	132	33	128	54	143	34
TTAGTCTCTCCTTTAA	ref_2009_reverse	61	67	70	38	64	48	72	51	82	35
GTTCATATTCACTCGT	ref_2009_reverse	2	5	6	4	10	4	10	7	6	4
CACGATATGGGGCTTG	ref_2009_reverse	277	370	365	276	438	277	415	243	448	294
CATTGGCAAGGGATTA	ref_2009_reverse	8	2	0	8	6	3	1	0	5	3
TTCGTGTGATGTTAGT	ref_2009_reverse	46	109	63	53	87	52	93	57	86	59
TGCGTGCGGCTTTCTA	ref_2009_reverse	65	116	90	84	121	67	123	65	127	63
CCCCCACCGCAACTGT	ref_2009_reverse	6	19	9	16	25	6	27	9	29	12
CAGGAGTCTAATTGTC	ref_2009_reverse	30	20	12	9	23	21	35	18	19	15
ACCCTGAATCGTGCGG	ref_2009_reverse	20	46	31	19	40	27	34	22	27	26
CGTGTCGGCCACATTG	ref_2009_reverse	37	60	45	51	54	45	70	34	80	37
TCCGGAATCTCTAACC	ref_2009_reverse	25	62	30	38	49	30	68	35	60	22
CGATTATGTAGCGTTT	ref_2009_reverse	17	16	32	23	24	20	36	13	27	18
GTGTGCCGCATCTAAC	ref_2009_reverse	34	71	58	46	85	43	87	37	87	37
TCCTCCCAGTTCACGC	ref_2009_reverse	5	18	5	1	23	0	19	3	13	0
GGCTCATAGATAGATA	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTTAATGCGTCGA	ref_2009_reverse	42	79	46	49	94	35	79	49	63	47
CGACCTCACGTCACCC	ref_2009_reverse	12	30	21	14	36	10	24	7	37	11
GTCGAGGTATTTTCGG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCATCGCATTACCCCA	ref_2009_reverse	17	30	26	23	32	17	37	15	27	19
TATTGGGCCTCTGGGT	ref_2009_reverse	31	32	25	17	30	22	44	24	38	18
CGGCCACTAGAAAAGG	ref_2009_reverse	16	58	34	16	45	18	68	26	46	25
CTGTATGTACTTTATC	ref_2009_reverse	4	10	7	8	8	7	9	7	11	6
GTGTACGTCTAAATAT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCGGATTTATCGT	ref_2009_reverse	50	72	60	56	72	49	74	44	79	52
ACCGAGGCGTTCTGCG	ref_2009_reverse	17	39	33	21	33	15	38	20	34	24
CTACTACGCATTACGT	ref_2009_reverse	242	317	232	184	322	209	346	227	366	214
TCCCCTTTAATTATCA	ref_2009_reverse	4	16	4	10	13	5	5	2	21	7
TAACCGAAGTAGGGTC	ref_2009_reverse	9	17	11	15	13	13	11	9	32	12
GCCACTTAGAAACGTG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TGCTATTGATGGGGTA	ref_2009_reverse	34	36	40	33	46	26	46	27	50	25
TGGCAGACTTGGTGAT	ref_2009_reverse	62	69	64	53	65	47	73	41	80	38
GAGTATGTATGCTTTC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTAAAGATAGCCCCTC	ref_2009_reverse	56	81	64	65	72	59	78	60	100	60
CATATTCACCAACCAT	ref_2009_reverse	44	72	56	45	67	54	84	60	73	50
ATTTCCGGTTTTGCAG	ref_2009_reverse	5	13	14	7	6	7	10	7	13	2
ACGATTTGTAGCCCAG	ref_2009_reverse	131	147	132	123	181	91	207	91	205	109
CTAATTATTCTAGTGC	ref_2009_reverse	6	16	4	16	21	7	22	5	25	16
AGTGGTAACTGTGTCA	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTTACATCGTCTT	ref_2009_reverse	70	109	67	70	117	63	102	65	138	52
ATCTTTCAATGTTAGG	ref_2009_reverse	42	55	56	41	68	41	77	34	83	35
ATAATTGGTAATTTGG	ref_2009_reverse	16	30	21	20	36	16	30	21	40	16
TAGTGCGTGCGTGGTC	ref_2009_reverse	130	257	145	151	212	156	245	93	241	133
CTCGTTTGTGCCATAT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTACCGGCCGCCA	ref_2009_reverse	13	41	19	9	35	14	47	14	32	14
TGGCTCATGATGGTCT	ref_2009_reverse	5	10	13	5	11	3	8	4	13	7
GTTGTATCGGTTAGTT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCGGATTTGGTAG	ref_2009_reverse	24	49	29	23	33	28	49	17	51	26
GCTCCCCCCGGGTACC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTAGGCGTATGACGAG	ref_2009_reverse	24	41	35	43	28	31	37	22	44	26
AAGCGGTAGTCTGTTT	alt_2009_reverse	98	143	133	114	140	111	167	81	175	84
CTTTAATTGTCATTCC	ref_2009_reverse	29	55	41	24	48	29	44	27	50	21
CATTCAAGACCTTTCT	ref_2009_reverse	33	50	32	27	49	23	35	37	52	23
CACGGGCGTTTCGTCC	ref_2009_reverse	25	26	24	29	43	25	31	21	40	21
TAACTGTTCGGTCTGT	ref_2009_reverse	21	23	23	16	39	13	31	16	23	15
TCAATTGTTAGGACCC	ref_2009_reverse	10	12	19	21	14	12	18	8	35	9
GTTTTTGTGTACTTGT	ref_2009_reverse	60	117	88	72	123	69	127	59	154	62
CGTCTGGAAGTTACAT	ref_2009_reverse	11	16	13	8	18	8	15	7	21	13
TCCGTGCCATTAGCCT	ref_2009_reverse	89	151	90	75	127	101	126	82	131	66
CCATCATTGACATTAA	ref_2009_reverse	26	42	33	39	44	40	46	29	63	36
TGGTCGCAGAAAACCT	ref_2009_reverse	9	19	6	7	11	5	11	11	9	6
ACGCAGGTATCACGCC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TGAAAGCGCCTTAGGT	ref_2009_reverse	22	34	18	14	22	15	24	13	24	13
TACAGACACCCACTTT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTCACACAGGCATGAA	ref_2009_reverse	14	19	6	6	10	10	14	16	16	8
TTATGTGCTTCGAATC	ref_2009_reverse	18	25	17	15	33	19	33	11	33	24
AGCGTGCTTTCCTCCT	ref_2009_reverse	50	46	38	31	45	41	41	39	51	28
TCTGTCGATGGCTATG	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCAGAATTTTCCT	ref_2009_reverse	38	60	45	38	60	48	58	30	64	29
TCTGCCAATGCCTTAT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CATAATACCATATCCG	ref_2009_reverse	1	6	9	0	7	2	5	5	4	5
TGCCACACCTCCGATT	ref_2009_reverse	1	0	1	0	2	2	1	0	2	0
CATATCCTGCAGTATG	ref_2009_reverse	5	6	2	9	7	4	7	4	12	6
TGATTCGCTATTTTGC	ref_2009_reverse	9	10	4	8	5	4	4	9	11	9
GCGTCCTCGCTATTAC	ref_2009_reverse	45	62	35	50	55	46	71	41	58	39
TTCTTGTTTTCGACCC	ref_2009_reverse	8	7	3	4	4	4	6	1	3	6
GTTGAGCTGCGTTCCG	ref_2009_reverse	59	54	68	42	80	55	87	55	74	53
GGCCAGCTTACCTTGT	ref_2009_reverse	6	24	4	13	29	7	20	11	21	2
TCTGTGTTAAGGGTCT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
AGGTAGGATTTATGTA	ref_2009_reverse	32	39	34	41	50	34	45	25	41	30
CATCCCACAGCGGCAT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGACCGCTCTGAA	ref_2009_reverse	36	50	37	47	46	41	60	30	75	38
ATGAACAATTTCTCGT	ref_2009_reverse	11	33	30	30	33	24	27	21	36	30
TACAGACACCTGTTAA	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CGGTAAGTAGCTTCTT	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTGCCTGTTAAGT	ref_2009_reverse	17	20	10	4	25	14	22	8	10	16
GATCCGGTGTGCCAAC	ref_2009_reverse	74	95	50	55	110	39	129	52	156	55
CAATCGTCTTCGGGTT	ref_2009_reverse	45	54	37	38	44	33	59	33	58	35
TCTGGAGGGACTCGGA	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTACTGTCGGACA	ref_2009_reverse	7	16	2	4	30	10	32	4	22	4
CAATGCGGTTCATTAC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTGATCTGTGGAG	ref_2009_reverse	12	12	5	5	13	5	13	8	10	6
GCCAATCCTCTAGAAC	ref_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCTCAGCACTTT	alt_2009_reverse	141	268	163	121	274	118	245	137	249	124
AACCTTCTGCATAGCC	ref_2009_reverse	7	8	12	7	14	3	4	4	18	9
TACGACTCACAACTCC	ref_2009_reverse	21	36	24	19	41	11	45	21	24	25
CTCACACACGTCTGTA	ref_2009_reverse	5	7	1	1	11	3	10	3	10	4
AGGACATCAGTTAGCA	ref_2009_reverse	14	37	31	16	26	20	40	18	42	20
ATCGGCAGTTATGTTT	ref_2009_reverse	2	4	2	3	1	6	7	6	2	4
CGACCGGGTAGAGTCT	ref_2009_reverse	12	16	12	14	14	7	34	10	31	16
TGTAGTTTCGTCCGCG	ref_2009_reverse	16	25	22	21	24	24	25	14	31	20
GCAAGGAAATTTAGCT	ref_3315_upstream	203	169	307	224	117	199	189	200	207	175
AAATACAGACTGATTG	ref_3315_upstream	71	49	81	90	53	67	56	65	57	65
AAGTCCGTGTGATTAA	ref_3315_upstream	12	9	13	9	8	11	8	4	4	8
TCCACCTTTAATTCTT	ref_3315_upstream	11	6	22	20	13	9	17	19	16	11
CTAATTACCGCTATTT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCTGTCAATTGTT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCAAGTTATCTGC	ref_3315_upstream	101	102	130	112	79	95	97	105	85	102
CTGAGCCGCAAGGACG	ref_3315_upstream	37	35	48	47	35	30	39	33	36	40
TTGAGTACTACTGTAG	ref_3315_upstream	77	74	83	69	78	75	82	73	96	72
ACTCCCTACTCCGCTT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGTCGTCAGATT	ref_3315_upstream	8	13	15	12	13	11	5	19	7	11
TTTGGCGGATCGCAAC	ref_3315_upstream	215	177	288	191	209	219	176	243	189	201
AGAAGAGCTTACTTCG	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTTACCACGAGGC	ref_3315_upstream	151	141	165	180	110	146	118	95	118	156
GGTGTCTATTCCATTC	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGTAAAGTAGGCG	ref_3315_upstream	44	31	40	36	43	32	30	40	36	44
ATGCAGTTTCACTTTT	ref_3315_upstream	18	8	8	13	4	8	7	16	4	14
CATCCCGGGGGCCCTT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
ATCACGTGGGATATTC	ref_3315_upstream	76	66	86	74	54	69	42	55	65	70
TACCCCAGGTCAATAT	ref_3315_upstream	33	34	40	34	26	19	29	27	28	34
TAACACATATGTCTTT	ref_3315_upstream	14	13	17	12	5	15	16	11	9	11
ATACACACACCACATT	ref_3315_upstream	54	47	69	66	77	73	63	73	51	70
CTTAGTACTGCCTATA	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGTGGACTCATTA	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
CGCACGACATATGGCC	ref_3315_upstream	104	52	98	75	66	69	55	68	59	62
GGAACCTGAAAGGCTT	ref_3315_upstream	24	18	29	27	21	18	11	27	20	16
TTAACAACTATTCGGC	ref_3315_upstream	60	64	79	80	50	45	52	59	61	53
GGGATTACCGTCAAGA	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTAGTGGTCTTTT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGTGGGACCCGCC	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTTCACGTGGGAA	ref_3315_upstream	9	13	13	12	13	12	7	13	8	8
TTTCTTCTGGGAGGGT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGGAATTATACTG	ref_3315_upstream	4	4	7	1	6	3	2	4	7	0
ATTTAGTTTTCTCGTT	ref_3315_upstream	7	7	13	5	5	5	7	12	4	3
GTTCCCCCTTTTCTAC	ref_3315_upstream	10	45	9	11	48	16	64	14	76	9
CTTAAGTTCGAAGAAA	ref_3315_upstream	32	39	46	39	40	38	26	30	30	29
ATAATTATGCTTTTCT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
GCAAATAACGCTCAGT	ref_3315_upstream	29	40	62	40	51	44	60	28	60	35
GTTAATTGAGTTTCGG	ref_3315_upstream	89	51	114	70	52	87	60	69	70	73
GGCACCAAGGGATGCG	ref_3315_upstream	52	137	105	93	188	72	154	81	160	66
CCGCGTTTAGCTCTTG	ref_3315_upstream	56	55	92	73	59	61	69	50	50	52
TGGGTGGGTCATGAAA	ref_3315_upstream	358	262	464	356	262	384	306	286	346	297
ATAATACTGCTGCCTA	ref_3315_upstream	8	10	15	16	11	11	13	14	11	16
CGTTTTCGTCCTGCGC	ref_3315_upstream	156	67	152	149	87	155	79	141	90	138
TCTAGACAGGATAGCT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCGCTTTAAACTC	ref_3315_upstream	105	158	182	164	128	124	125	133	151	94
CCGATTTATTAGGCTC	ref_3315_upstream	119	88	133	137	93	108	119	106	95	108
TACTTGTTTCCGTGTT	ref_3315_upstream	19	17	23	8	6	7	12	5	9	16
TTTGTTGATTGACGGC	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGCTTTCAGTTCA	ref_3315_upstream	8	14	11	4	7	10	7	6	6	7
GCCGACATGACCCTTA	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
TTAATTCCTCGGATGT	alt_3315_upstream	49	22	49	52	29	27	27	40	39	45
AGAGATATCCTGAGTG	ref_3315_upstream	62	72	112	82	48	57	69	69	65	49
GGGTATTTCTCCGATC	ref_3315_upstream	72	46	95	91	55	55	66	68	55	67
GGCTTCCGCACGCACA	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
AAAAGTTCTACTTTTG	ref_3315_upstream	4	0	5	9	2	1	6	3	2	7
TACTGGCTCAATCCTT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
CTAGCGGTGATAGTAT	ref_3315_upstream	186	112	246	195	157	182	147	185	173	155
GCCAATCGTAAGTGGC	ref_3315_upstream	210	187	272	281	211	222	191	207	200	186
TTTCTAAATCATGGTG	ref_3315_upstream	11	2	12	9	3	13	6	5	11	8
AACAGGCCTTACTATC	ref_3315_upstream	18	18	18	17	11	12	17	16	19	13
GTAATATCTGAATCCG	ref_3315_upstream	48	35	49	55	42	42	48	43	39	47
CATTTGACACCCACCT	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGGATTTGCCACC	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
TAAAATTATGGGCTTT	ref_3315_upstream	25	9	17	13	7	21	11	8	11	10
TCCGGTATAGGCCACC	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
ATGCATATATTCTCTG	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
CTATCCAGTGTCCCCC	ref_3315_upstream	29	20	24	41	24	27	25	23	17	10
CAACCTTCAGCCTGGA	ref_3315_upstream	50	35	62	55	26	27	53	47	39	38
GCAGTTCCGGCGTAGT	alt_3315_upstream	43	28	72	60	49	41	43	46	50	49
GACTTAGATTGCTGTT	ref_3315_upstream	45	39	52	37	38	45	31	45	23	32
CATGGTGTCAGCGTTA	ref_3315_upstream	36	16	40	25	25	34	28	34	22	16
AGTAAAGTTGAATACC	ref_3315_upstream	0	0	0	0	0	0	0	0	0	0
CCCAACGGTTTAAAAG	ref_3315_upstream	89	95	139	115	68	117	88	116	85	79
GGAACGCCATCTTAGG	ref_3315_upstream	404	181	474	393	226	345	215	353	196	331
TCTGCAACCGCACCTC	ref_3315_upstream	19	22	35	37	16	23	27	24	18	19
TAGCAACAACGTGCGT	ref_3315_upstream	31	27	24	29	27	24	22	14	32	27
GGGACGATACATCTTA	ref_3315_upstream	208	96	293	244	108	236	119	165	122	230
AGCACTGCATAGCGCT	ref_3315_upstream	9	11	13	13	17	13	7	11	11	8
GTGGTAACCTCTTGTT	ref_3315_upstream	54	34	60	48	38	41	32	33	27	35
ATAGACATTTTCGAAT	alt_4820_fdr	255	150	304	276	168	244	177	280	168	216
AGTATGTTGAATATAT	alt_4820_fdr	96	140	97	83	138	105	143	92	123	104
GTCTGGTCTTGTACCT	ref_4820_fdr	21	84	40	29	84	16	87	26	85	21
CGTTGTTGTTGCCCAT	ref_4820_fdr	49	25	33	40	30	36	31	31	24	25
CTGACTCCCTGCTATA	ref_4820_fdr	103	78	132	99	66	84	65	93	74	72
GGGATCTGCCGGAGAT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTTGTCCCCCAGA	ref_4820_fdr	40	16	70	59	19	39	17	35	24	45
CCCTTTGTTAAAAACT	ref_4820_fdr	49	31	68	46	36	46	25	46	35	49
TTTTTAGCGAACTCTG	ref_4820_fdr	68	25	97	59	38	66	35	52	39	68
AGATTCTCGTAGGCCG	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTATCGCGTCTCCCTC	ref_4820_fdr	64	57	99	93	73	71	76	68	58	64
CATAGTAGCATTATTG	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CGAAAGGAGCATGTCA	ref_4820_fdr	35	19	57	45	17	34	23	35	15	34
TTCTATCTGATACTTT	ref_4820_fdr	19	6	21	17	15	16	22	18	10	12
ATATTTAGTATAACTA	alt_4820_fdr	3	1	4	2	4	3	0	3	1	6
AAAGACATTTTCGAAT	ref_4820_fdr	0	0	0	0	0	0	0	1	0	0
GTGAACCGTAAAAGCG	ref_4820_fdr	12	9	23	14	10	12	7	13	4	15
TTACGCTCATTAGGAT	ref_4820_fdr	22	16	27	20	9	14	10	20	14	20
GGTCCCATCTGCTAAG	ref_4820_fdr	71	28	83	75	45	64	49	62	47	50
GCTACACATGGCCTAA	alt_4820_fdr	165	79	217	211	94	169	85	181	78	120
GGAATACCACATATCG	ref_4820_fdr	75	17	83	68	31	52	36	63	26	53
GGCGATAAGTACTTCT	ref_4820_fdr	19	7	33	11	16	18	9	21	9	14
TCTGCTGGTGACATTA	ref_4820_fdr	62	40	86	78	36	55	33	55	39	59
TTACACTCTTCGGATG	ref_4820_fdr	3	3	7	1	4	7	1	4	5	1
TCTTAGGTCCGGCTTA	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGCGGATTTGGTT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
AATCAAGTCCCCCGGG	alt_4820_fdr	34	24	33	35	53	22	38	24	39	30
TAGAGTCGTAAAGCCC	ref_4820_fdr	8	7	5	14	5	8	3	7	4	10
TGAGGCCTGGAGTCGC	ref_4820_fdr	31	14	26	44	5	33	10	32	17	36
CATTATTTTTGCGGGC	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
ACATTCGATACGTTTC	ref_4820_fdr	2	3	1	1	1	3	2	2	0	4
TTTTTAAGTTGTGAAT	ref_4820_fdr	32	17	49	36	9	24	17	27	17	31
CAGACCTGAGGGGCTC	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTCGCAGTTCAGT	ref_4820_fdr	44	19	66	61	31	57	20	52	38	41
CGCGGTTATTGCTCCG	ref_4820_fdr	31	12	21	14	12	17	11	17	7	16
GGCCATTCTTGGCCTT	ref_4820_fdr	43	20	50	29	16	38	21	38	18	23
ACCGTACCTTGAAAGT	ref_4820_fdr	68	38	99	81	43	59	44	82	47	82
GGGTGGCGCTTGGCAC	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTTCAGCCCCGGCGAC	ref_4820_fdr	58	32	78	76	44	71	36	82	36	67
CTCTTATTTCTATAAT	ref_4820_fdr	102	34	119	92	35	92	41	79	48	69
ATCCAGATCGACTTAA	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CACTATGGCACCTTGG	ref_4820_fdr	68	30	66	70	32	53	35	72	32	43
CTATTAGGACAGAATT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TGCTAGGGTTTCTGAT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
GTAACTTGCAGGGCAT	ref_4820_fdr	80	52	93	87	48	81	60	89	47	76
GTTAGAGAGCATCACC	ref_4820_fdr	63	16	52	43	22	69	35	51	25	43
TTGATCGTTGCTATTC	ref_4820_fdr	117	48	130	137	44	91	52	108	64	84
TTCCCTGCGGAGGTTC	ref_4820_fdr	22	11	28	34	14	22	9	28	13	31
ATTGCGTGTTGTTTTT	ref_4820_fdr	28	11	41	19	14	18	12	20	14	20
ATGGATGCAAGTGTGT	ref_4820_fdr	58	33	65	62	30	56	42	51	40	45
ATAGGCCACGGCTGAA	ref_4820_fdr	67	42	135	82	47	59	41	85	45	79
TTTCTCGTTTAGTACC	ref_4820_fdr	31	19	40	41	15	43	24	36	12	27
CTTTCTCGTTTAGGAC	ref_4820_fdr	33	23	64	52	24	44	24	33	19	50
TCCGTATTCTCGTAGG	ref_4820_fdr	28	15	40	41	19	30	16	29	13	22
CCGCCGTGACAATGAT	ref_4820_fdr	128	32	128	116	49	108	72	101	72	91
CGGAGAGCTTTTGGCT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CCTATACGGATAAACT	ref_4820_fdr	38	23	63	61	38	41	26	45	37	36
GGTGCCCAAACAAAGC	ref_4820_fdr	150	87	248	227	84	168	86	149	67	141
ATCTTGTTACCTCGGC	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TGGTATCCAAGCTGGG	ref_4820_fdr	247	163	313	261	142	243	144	235	128	262
TAATGAAGAGGGGAGT	ref_4820_fdr	18	18	29	17	6	24	18	14	11	14
TTCCTAGTGAACTGTA	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTAGGCATGCCCG	ref_4820_fdr	29	13	34	22	4	25	16	10	21	18
TTTAGCGAGCAATTGG	ref_4820_fdr	57	35	47	48	29	50	19	45	22	38
GCCAAGTGGCCTTACG	ref_4820_fdr	22	6	34	34	14	17	5	35	14	23
ACTCGGTCTTGGTCCG	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
GGATCCACGGGCCTTC	ref_4820_fdr	28	14	35	32	24	18	13	29	9	18
AAGGGCAGTGGAATTT	ref_4820_fdr	135	83	216	154	90	145	85	165	82	134
GGGATTTTGAACGCGA	ref_4820_fdr	20	11	27	23	7	15	13	30	15	29
TTGATCCGGTCGAAAT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TACTCGCGCTTTTATT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTAGAGCGTCCAG	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCTTATTTCCACT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTGTATTGCATAC	ref_4820_fdr	65	34	92	73	45	75	41	77	51	62
TCACTGTAGCGACTTG	alt_4820_fdr	29	39	24	20	44	30	51	31	35	17
AAATCTATACCTCTCT	ref_4820_fdr	482	232	523	486	257	445	242	434	259	339
GACAATCTTACTGATC	alt_4820_fdr	10	24	13	15	21	11	24	13	16	5
CTACTACAGTTCCTTC	ref_4820_fdr	35	24	43	55	38	35	54	25	23	33
AATACATATGCATGGA	ref_4820_fdr	275	153	342	266	132	230	151	253	147	221
ATAGGCCCGGTGTTAC	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTCATAGCATGAA	ref_4820_fdr	93	52	136	128	64	116	94	107	76	91
TCTGCGGGGCTCCATA	alt_4820_fdr	78	37	109	112	47	86	47	82	34	82
CTCAATAAGAGATCAA	alt_4820_fdr	79	107	86	93	98	82	119	77	117	65
TTTGCTCTTTTTTTCA	ref_4820_fdr	12	13	20	16	7	19	6	15	4	15
CGACGGCCGAGACCAC	ref_4820_fdr	60	55	54	47	49	51	42	49	66	45
TCGCCGGCCTGCTGTT	ref_4820_fdr	166	102	221	169	100	188	127	185	101	146
TTAACCTGGTTATTAA	ref_4820_fdr	50	32	59	41	44	39	32	41	25	29
GGGATCTATCCTCTGG	ref_4820_fdr	262	156	309	309	177	240	174	235	199	236
AAATCACAGTCGGCAG	ref_4820_fdr	129	79	172	116	65	116	76	153	62	102
TATGAAATCAGTGGTT	ref_4820_fdr	67	46	119	102	36	71	41	104	53	77
TGATCGATGCACTTAG	ref_4820_fdr	99	75	97	76	50	82	58	82	59	69
TACTGATCGCCTCTCG	ref_4820_fdr	16	12	22	26	14	24	12	27	11	25
TACTCCTTCATATTAT	ref_4820_fdr	132	49	130	127	70	109	55	114	48	109
GGGACTGCGAGTCGTG	ref_4820_fdr	6	3	13	7	7	15	6	8	10	13
TAGAAATTATACTTCA	ref_4820_fdr	31	4	26	26	12	19	6	14	10	18
TCAGGTATTAATACAG	ref_4820_fdr	29	26	40	42	25	33	25	41	15	45
TCGTTTGACAATTTTC	ref_4820_fdr	15	6	17	16	10	10	10	12	5	7
TACTCCACTACACATA	ref_4820_fdr	34	20	35	29	35	30	32	26	37	13
TTGACCTAGTACCCCG	ref_4820_fdr	0	5	2	3	10	1	13	1	12	1
GTACCTTCTTATTTTT	ref_4820_fdr	128	68	157	133	64	157	46	131	52	123
CATCTACCGAGTGATT	ref_4820_fdr	93	31	110	105	58	80	47	66	47	88
TCCCGTTACCGAGCTG	ref_4820_fdr	48	23	47	52	23	46	20	46	15	43
TCGGCCCACTACATAA	ref_4820_fdr	23	14	30	31	15	27	22	15	15	22
CAGCGCTATCTGCATC	ref_4820_fdr	16	10	21	22	13	9	14	26	17	7
CGTCGATTGCTAAACA	ref_4820_fdr	103	52	131	130	68	125	74	130	81	106
ATAGAGGTGGGTGTCG	ref_4820_fdr	44	33	54	57	33	58	30	36	29	52
ATCAATGGCTAGTCCT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CATTATCCTTCATAGA	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
AATGGGCGGGTCGCTG	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
GAAGAAGCGATCACCA	ref_4820_fdr	103	35	104	98	49	106	42	84	44	64
CTCCATTATGTGGGCG	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGATTGTTCGAGT	alt_4820_fdr	173	101	234	241	105	174	102	201	112	188
ACCGAACGCCCATCCG	ref_4820_fdr	98	45	112	84	57	88	46	106	38	78
TAGATCATTGACGACC	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TTAACTTGGAAAATCA	ref_4820_fdr	10	6	20	10	5	15	6	11	6	10
CCGTGAGTTGATTCAG	ref_4820_fdr	37	17	53	34	25	30	27	36	25	24
CTGTATTATCCTGCGG	ref_4820_fdr	0	0	0	1	0	0	0	0	0	0
CAGTGTCCACCCCTTC	ref_4820_fdr	46	29	56	55	28	44	23	46	16	45
TCGTACTTTGCCTGTT	ref_4820_fdr	83	42	101	92	52	81	48	90	54	80
CGACATACACCGTGTT	ref_4820_fdr	0	0	0	0	0	0	0	0	0	0
TGTACAGAGGTTACGG	ref_4820_fdr	262	129	310	276	120	236	140	230	145	221
GGTGATTTCTTGTCGT	ref_4820_fdr	99	59	145	97	60	108	49	110	63	95
TTAAACCGCATTTGGA	ref_4820_fdr	391	202	489	401	194	382	170	399	206	370
CGATCTATTTCGTGTC	alt_6043_new	43	28	27	39	36	38	36	33	28	41
CGCGAAAGTTTGATTC	alt_6043_new	40	46	42	37	35	58	51	46	51	41
GTGGCCTACTTTAAAG	alt_6043_new	50	25	41	47	49	51	24	45	31	41
TGGGCCTATTGTATGG	alt_6043_new	39	20	28	35	22	30	14	32	27	32
GTTATCTGACCGTCTA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CCATAAACCCGCAGTA	alt_6043_new	18	14	21	20	11	11	13	19	22	18
CTTACCATAATATATC	alt_6043_new	6	2	7	3	3	2	5	4	4	1
GCCACGCTACCGGTAA	alt_6043_new	2	7	5	3	3	6	8	4	13	2
CCGTTACCTTCATGTG	alt_6043_new	20	53	23	22	52	18	48	23	47	12
GCTCCTTCAAGCGAAT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
ATCTAAGGTCGATTAA	alt_6043_new	130	113	173	152	128	153	127	140	106	119
GGAAGGCGAGTCTAAC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TCCGGTATGGGCTACA	ref_6043_new	73	99	65	67	79	57	82	71	75	56
CAATTTTAACCCGAGT	alt_6043_new	118	83	177	156	91	122	105	112	109	128
ACCACACAGTCTAACG	alt_6043_new	28	28	27	28	25	32	30	27	46	34
ATGCTTTTCTCAGAGT	alt_6043_new	27	25	36	20	21	19	15	19	20	25
CTTGGAGTACTTTATT	alt_6043_new	15	13	8	12	15	14	24	9	9	10
TCGGAAGCTGTTTTTT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
AATCTAAGTTTTTTTA	alt_6043_new	34	41	52	54	50	35	50	45	42	48
CTAATCGGTTTCTTTG	alt_6043_new	17	14	23	19	14	23	9	11	11	13
ATTTTGGCGCGATTTA	ref_6043_new	134	107	165	129	90	121	122	135	109	118
AGCTTCGCTTTCCGTG	ref_6043_new	56	34	74	55	55	63	48	55	49	56
TTATCTAGAACAGTTG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GTTGAACCGCTCAGCT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
AGTAGCGGACAATCAC	alt_6043_new	30	37	39	29	28	29	32	37	31	30
ATGTTAATAACACCGC	alt_6043_new	24	14	49	45	20	35	31	37	30	21
GGGACAAACCCGTTTG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TAGGGCTCCGGTCCCA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CGCCCTGAACATCGTC	alt_6043_new	190	135	226	207	111	170	157	186	154	170
CCAACGGAATGTCTCC	alt_6043_new	6	5	6	4	10	7	7	3	4	7
GACATGTTATCGTTGG	alt_6043_new	613	490	755	628	531	584	458	600	533	535
ATTCAGTTCGGCGGTT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
AGACAGCCATGCATAT	alt_6043_new	21	13	24	27	14	16	16	9	12	14
ACATGTTTGGTGACGC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TAGCATAGGGCTTACG	alt_6043_new	21	19	23	40	20	22	16	30	18	25
CGCACCATTTGTTTTT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TTCTTCAGTCGTTCTT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TCGAATCTGGTGTTAC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
AAGATAGCTGGTCCGG	alt_6043_new	3	5	0	2	3	3	5	6	2	3
GCGTCTAGTCCACTTC	alt_6043_new	116	77	135	146	78	122	109	104	116	81
TCCACCGTATCCGAGG	alt_6043_new	4	1	3	6	3	0	3	2	1	2
GGGTGTACGGTACTTA	alt_6043_new	5	5	3	9	8	10	6	9	5	10
GGTGTTACATCAGTTT	alt_6043_new	46	45	81	80	34	48	43	64	49	48
ACTATCGGTCTCAGGT	alt_6043_new	153	90	145	150	110	123	110	126	107	122
TAGTATCGGGCTGGGC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GTGGATAAACGTTCGT	ref_6043_new	244	175	288	260	229	252	216	222	210	228
CCTAAGATTCCGTATA	alt_6043_new	15	16	23	24	12	18	13	22	11	14
GGCAAGTACTTGTGTT	alt_6043_new	16	11	12	18	17	9	12	8	16	11
TTCATGTACATTCAGG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TACTCGGTTAAGTGCT	alt_6043_new	16	15	24	19	19	33	15	31	14	21
CAACGGAAATGTTAAA	alt_6043_new	89	82	109	97	85	94	99	78	72	85
TGTGGGCGCCAAACCA	alt_6043_new	28	25	46	38	18	36	26	36	21	31
TTAAAGGACCGTGGAT	alt_6043_new	160	134	193	180	127	166	136	133	150	171
TCGCTCCACAATCGGT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TTTGTGTTTCTCACCA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CACCTCATGTGCAACA	alt_6043_new	255	291	293	273	311	220	275	248	285	213
TCTTAGATCCCGTGTC	alt_6043_new	34	46	53	37	31	49	34	34	41	35
CTAGACTATGTCTTTC	alt_6043_new	20	22	36	27	18	20	30	17	23	21
CATTCTCCACTTCAGA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GGACTGGGCAGAACTT	alt_6043_new	57	36	55	36	32	45	29	30	28	33
GCTGCTCGGCTGAATT	alt_6043_new	70	58	59	67	50	69	60	67	64	53
CGTTCTGAAGTTTCTG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GGTGCTATTCATTCAG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GGAGAATCATGGACCC	alt_6043_new	149	115	195	151	126	174	120	166	117	128
TAGCGAGCTATGTCAT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TTTGTTCCGCCTTCGG	alt_6043_new	254	202	377	290	203	249	239	228	252	244
TACAAGATACACTTTA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TGCACGTTGATTCACT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TCTCCAAGAACCTTAG	alt_6043_new	36	34	47	40	43	35	32	34	40	32
TACACGGTTTCCAGTC	alt_6043_new	7	15	15	18	7	18	10	16	10	11
CTTCATGCTGTGCTAT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
AGCGAAAGTTTGATTC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GTGACGGAGATTATTA	alt_6043_new	178	125	185	211	125	149	144	159	145	154
CATTTCGATTTCGAGG	alt_6043_new	24	26	35	26	30	35	33	29	24	41
CTCCGCCCGTGTGATG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
AATTTTGTCAGGCTCT	alt_6043_new	11	15	22	23	17	17	22	16	24	17
TCATTAACTAGTATCA	alt_6043_new	55	53	64	59	79	52	71	61	62	48
ACCATTAATATCTCAC	alt_6043_new	6	8	17	10	10	9	12	12	13	11
ATCGGGCAAATCGATC	alt_6043_new	0	1	0	2	0	0	1	0	0	3
AACGAAACTAACCCAG	alt_6043_new	72	43	87	90	49	61	49	76	75	74
GGTTTAGTGCCATAAA	ref_6043_new	22	13	28	11	17	10	16	16	23	16
TACTTCATCCTTCCAT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CTGGCGCGGTTTTCAG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TTGCGGCCTTTCGCCT	alt_6043_new	16	10	18	14	7	13	7	11	9	12
GCTTTGGTCGCGCGTC	alt_6043_new	68	60	84	82	70	65	59	77	64	60
GGATCTGACCTGGGTC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TTGACGTCTTAATCTT	alt_6043_new	216	162	262	237	183	216	151	192	197	201
GCATAGAGATCCCCAT	alt_6043_new	33	18	25	32	21	22	20	29	20	20
CGATTGGCTATCGCTT	alt_6043_new	166	101	193	168	116	154	146	150	124	135
GGCTGATTACCCTCCA	ref_6043_new	322	244	397	325	259	313	247	318	263	311
TATAATTGTCTCGTTA	alt_6043_new	38	25	33	34	25	38	26	41	26	22
GAATCGAACATATTCC	alt_6043_new	17	11	14	10	9	8	12	5	5	1
TATCGTGCCACTTATG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GCAAAACTGAGTGATT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GAAACAACTCAAGGGA	alt_6043_new	5	5	9	8	4	8	6	6	4	3
GTGCTAAGGATATTGT	alt_6043_new	47	29	42	37	33	29	40	42	38	22
TAGTTGAGGCAGCTGT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CAGTGTTGATTAGTGG	alt_6043_new	10	14	18	8	13	9	7	14	4	9
CAGCAAAGTCTAGTAA	alt_6043_new	145	149	157	125	135	115	149	135	130	112
CGAGACTTGGTGGTAA	alt_6043_new	22	16	42	25	13	15	14	19	22	22
CTGCACATGCGGTGAT	alt_6043_new	31	17	27	30	19	38	21	32	32	26
CCAGGCTAGTACTTGC	alt_6043_new	9	18	9	11	11	5	14	5	13	11
TTTAATGCGCTCTATT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TCGTTTGTCGTGGGTA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GCCTCACCCATGTCTG	alt_6043_new	35	34	64	40	43	27	29	33	34	40
GAAGCGCAGCGTACAT	alt_6043_new	97	81	106	70	64	68	84	62	77	85
CAACTCATTAGCTCCA	alt_6043_new	60	62	81	64	73	48	67	65	56	35
GAGGATATTTCCCACT	alt_6043_new	16	13	20	21	12	13	7	11	21	8
TTCAGGTGGAATGTCT	alt_6043_new	29	27	59	36	31	37	28	24	23	17
CTATTTGGTCTGTTCG	alt_6043_new	34	28	66	41	25	35	29	49	48	23
ACGCACTTTGCAAACC	alt_6043_new	83	71	85	78	53	63	63	69	58	93
CTCCCCGCTGTGCCTA	alt_6043_new	4	15	8	4	17	3	22	4	45	5
ATAGGGGTGTAGGTCG	alt_6043_new	5	10	21	13	9	4	6	9	2	13
ACGTACTTACTGACGT	alt_6043_new	18	18	11	22	29	21	27	12	26	21
TTTCGGTTACCACCCG	alt_6043_new	0	3	4	2	2	6	0	2	2	2
GCTATCGGCGGAAAAT	alt_6043_new	31	30	35	28	27	37	19	37	24	26
GTTATAATCTTCCAGA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TTCGTGGATTGGACGC	alt_6043_new	20	18	28	25	12	15	12	23	29	20
AGTGCGACCTTGATCC	alt_6043_new	47	55	87	62	47	57	75	62	71	48
GAGTTCCCGTAAGTCC	alt_6043_new	1	0	0	1	1	0	1	0	1	0
AAATGTCCGCATACTT	alt_6043_new	23	14	51	43	24	34	16	26	19	25
ACCCATGATGGTTTTC	alt_6043_new	40	25	51	37	25	47	32	37	39	50
CGGTTCTTCGTACGTA	alt_6043_new	33	28	36	32	30	27	26	24	39	34
CCTGGCAAATTCTTTC	alt_6043_new	24	23	19	29	37	20	21	21	22	13
CGCAAGTGGCGATTTA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
TTCATCCAGTCTGCGG	alt_6043_new	44	28	57	44	32	30	42	44	36	34
GTTGTATACGGGTCAG	alt_6043_new	11	7	7	9	4	8	10	8	11	4
GTTTCTGCGCGTACTA	alt_6043_new	46	42	42	42	41	46	33	36	29	42
TGACATGGGTTGCGTA	alt_6043_new	117	79	136	119	89	102	88	97	105	99
ATCTACTTGATGGTGT	alt_6043_new	17	16	38	32	30	23	11	22	27	17
CTTATGTAGCAGTTGT	alt_6043_new	160	119	188	151	103	129	112	151	123	104
ACATTTACTCCATTTG	alt_6043_new	36	11	35	28	22	34	22	28	25	38
ACTCCTAATTTGGATG	alt_6043_new	43	38	72	58	43	44	52	40	46	44
AGCATCTTCTTTGCAA	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CGGTCATCGCCATCCG	ref_6043_new	3	1	1	0	3	0	2	0	3	5
CGTCACCACTGGCGCG	alt_6043_new	37	26	44	41	28	27	27	38	41	32
TTGGTCTGATCATATG	alt_6043_new	0	0	0	0	0	0	0	0	0	0
ATCGTGGCAAATGGCA	alt_6043_new	22	12	29	28	17	16	21	20	16	21
TGGTAGCTAATGCCCG	alt_6043_new	26	22	44	38	18	26	33	48	27	26
TTTGCACTGTAGTTCC	alt_6043_new	48	58	69	75	50	56	55	58	57	61
TGGTGCTACATTTGCG	alt_6043_new	39	22	36	31	18	25	25	28	21	27
TGATTCTCTGGCCTAG	alt_6043_new	62	76	110	96	71	82	62	86	69	72
GCGCATTATTCCATCA	alt_6043_new	153	132	190	156	124	126	165	127	135	144
GGGTACCGCTCGGATT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GCTTACGAAAGGTTAT	alt_6043_new	15	5	17	11	6	8	9	11	10	13
CTAATAACCTGAGGGC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
AGACACAAGACCGAAC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CTGTTCAGCATATCAC	alt_6043_new	0	0	0	0	0	0	0	0	0	0
CAGTTATCTTCCAGGT	alt_6043_new	13	1	5	8	8	7	9	11	7	9
GTGGAGATTTTGTAGC	alt_6043_new	20	14	34	19	28	21	13	26	23	17
AAATCAGTACCTAATG	alt_6043_new	104	115	144	119	95	121	110	115	127	100
CCACAAGTAACGTGAA	alt_6043_new	7	9	11	13	10	10	13	5	10	10
GATTGACTCGATAATT	alt_6043_new	0	0	0	0	0	0	0	0	0	0
GAGTACACGGGCGTCA	alt_6043_new	188	153	215	192	154	135	158	163	191	162
TAGTGGGCTCATTAAC	ref_6043_new	230	187	319	264	218	214	235	220	214	222
GTCTACGTCAGTCTTC	alt_6043_new	72	57	96	72	56	77	41	66	72	68
ATGTTGCTAGGGCTAC	alt_6043_new	189	169	274	197	185	213	179	200	194	158
GCGATTGCTTTCTCTG	alt_6043_new	40	39	69	52	41	49	39	38	29	44
TCTCCGACTTGGGTTG	alt_6043_new	38	42	50	52	37	28	43	37	43	31
ACCACTAGCTAGGCTG	alt_6043_new	118	106	155	142	115	128	93	109	106	114
CGACACAAGTTCGAGG	alt_6043_new	53	32	47	49	32	49	32	40	37	45
CGCCCCTTTTCCGACG	alt_6043_new	48	65	91	81	57	65	56	51	68	47
AATAGTACTCTTTCAG	alt_6043_new	10	11	20	15	9	11	14	15	12	7
TCGCTCTCCGTTGTCT	alt_2537_fdr	183	283	234	214	369	193	328	166	331	204
AGTCGTCCAGGCGATA	alt_2537_fdr	66	103	77	77	85	44	106	59	121	65
CTGAACGTTCTGTACC	alt_2537_fdr	11	15	5	18	17	15	12	13	22	15
CTCACTCCAGTACGTA	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGGGACCGTATTA	alt_2537_fdr	10	13	19	10	10	6	14	8	12	9
GTGGTGTCGGAATGAT	alt_2537_fdr	49	81	64	55	59	43	49	42	83	43
TCGAAGCCACAACAGC	alt_2537_fdr	10	20	11	17	8	11	17	14	11	6
GTATGATTAAACATAT	alt_2537_fdr	4	12	6	4	3	3	7	8	6	5
TCACTCCGAATGGGGC	alt_2537_fdr	6	27	10	9	17	7	17	6	11	9
AACGTGCATGGACTTG	alt_2537_fdr	4	9	4	14	12	15	11	11	17	4
TACAGCACTTCAAACA	alt_2537_fdr	88	111	92	105	132	83	129	84	158	99
TTGCATAGATGCGCCT	alt_2537_fdr	11	11	21	6	7	16	12	17	15	9
GATTACCCCTAACGTT	alt_2537_fdr	113	115	153	112	144	89	133	97	140	102
TGCCAAGGCTTGTTTG	alt_2537_fdr	129	151	153	147	184	146	148	137	174	140
TTCTTGTTGTTCTTCA	alt_2537_fdr	18	21	30	14	31	14	25	17	22	19
CCATTTCCATTATTTG	alt_2537_fdr	190	259	209	209	245	185	282	174	263	148
CACATTGTAATTTGAA	alt_2537_fdr	10	11	7	5	11	6	13	4	12	1
CTGAGCACGCAGTCAA	alt_2537_fdr	7	2	1	5	5	3	7	4	2	3
TTTCTTTCGAGCTTCT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTTTCGGTCATT	alt_2537_fdr	2	2	2	1	7	0	5	4	8	1
ATATCTATACTAATAC	alt_2537_fdr	31	37	34	24	46	23	47	16	45	22
CGTTATGACAGCACCG	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCTAATACGGTTG	alt_2537_fdr	52	91	68	61	78	67	72	60	66	53
CACCTTTAGGGTCTAT	alt_2537_fdr	25	38	25	21	17	18	30	25	33	18
AGTGCAGCTATGTATG	alt_2537_fdr	56	58	85	64	65	66	62	59	81	50
CCTCACTGTAGGGGTG	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
CTTACAGGGTATGAGT	alt_2537_fdr	20	30	28	17	28	18	26	20	29	20
GGTATTATTTGCTTAC	alt_2537_fdr	5	15	4	6	26	2	14	5	21	3
GGTTATCTTATCGCGC	alt_2537_fdr	15	25	16	7	22	9	16	12	15	9
GTATCGGTCAACAGAA	alt_2537_fdr	18	32	39	25	46	37	47	42	61	24
GGGTTTGAACTGGCTG	alt_2537_fdr	62	57	63	40	63	65	75	56	73	49
ACAAAGTACTCCCAGT	alt_2537_fdr	42	35	43	33	40	32	38	23	34	25
AGCTTTTCTTGTACGT	alt_2537_fdr	18	29	27	27	20	22	28	19	23	8
ACTTTCAACGTTCTCA	alt_2537_fdr	32	39	37	25	36	28	49	34	46	28
TATTCCGTCGGTTATG	alt_2537_fdr	47	71	60	47	67	60	74	47	54	45
CGGCACGCGTGCCTAT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCTCGCGTCCTG	alt_2537_fdr	16	31	28	30	20	22	42	25	38	15
TAAGCAACGCAGCGGC	alt_2537_fdr	36	38	37	32	41	37	29	30	36	24
TGGCAATGGTGTTCCC	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TCTCATTAGTTTGTTT	alt_2537_fdr	92	134	123	107	131	119	126	124	154	101
GCTGAACAATGGTACG	ref_2537_fdr	19	27	39	36	53	17	39	26	37	21
TGCATGTTAGGAACTT	alt_2537_fdr	65	95	84	80	107	82	95	83	94	69
TAACTCTCCAACCCGC	alt_2537_fdr	10	20	16	10	13	20	23	15	20	7
GAGTAGTGCATAGCGT	alt_2537_fdr	16	25	15	28	37	17	22	15	27	11
ATTTGTGTCACTGTTT	alt_2537_fdr	4	5	5	5	14	1	7	6	11	5
CCCGTTATGGCCTCTC	alt_2537_fdr	78	61	81	67	76	59	83	59	96	63
CTTAACAAGACTGGCG	alt_2537_fdr	53	75	66	44	80	51	72	50	83	44
TTCGCCTGCGTTCTCT	alt_2537_fdr	53	49	61	44	48	55	63	41	67	43
ATTGGACCAGGCGTAC	alt_2537_fdr	22	38	23	28	32	15	25	14	28	13
TCCCGTTTCAATCAAG	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTTGATTAGGCGA	alt_2537_fdr	6	10	3	1	3	4	5	6	2	3
CTCATGGCTATGTAAC	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTATCATTTGTATTGC	alt_2537_fdr	49	72	61	35	50	40	46	27	58	56
AACAATTAGCTCGACA	alt_2537_fdr	328	359	430	349	388	313	349	329	411	293
GGCCTTAGACCGTCAT	alt_2537_fdr	0	3	4	8	2	2	1	3	3	3
TCGCCTCTATATATAA	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
CATCCATGCACACCTA	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGAAATGTTTGTT	alt_2537_fdr	23	41	34	32	49	26	39	22	49	19
TCCGGATGCCTACCGG	alt_2537_fdr	117	150	138	116	152	122	167	137	147	118
TGAGGCTTTCAATATA	alt_2537_fdr	110	180	121	116	153	98	144	111	217	103
CTAATTCTCCTGTGGC	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
CCCGACCTGAGATCGT	alt_2537_fdr	4	7	4	7	6	8	4	7	13	4
ATTGTCTATTGTCACG	alt_2537_fdr	12	14	17	12	14	13	22	17	22	12
GTGCTTGAACGTTACT	alt_2537_fdr	4	4	5	2	2	3	3	8	6	2
CGTGCAGCCCTAGGCG	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TGGCACTTAACCGGTT	alt_2537_fdr	147	176	168	151	165	138	187	133	186	135
GGGGGCACCCTATTTG	alt_2537_fdr	15	18	18	14	13	9	8	11	16	5
GTAGTATGATCTGGTT	alt_2537_fdr	5	6	2	5	2	0	1	1	5	0
CCATCAGCAGTTTGGA	alt_2537_fdr	24	36	26	17	22	18	11	20	23	9
ATACTGAGGGAATGGG	alt_2537_fdr	2	4	5	0	2	5	3	2	6	1
AAGTCCACGATGATTT	alt_2537_fdr	61	69	74	63	71	61	58	74	79	80
AATCTTGACGCCGGGT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCTTGTTTGTCTT	alt_2537_fdr	61	46	68	57	64	64	57	58	52	47
TCCGTGGGGACTCTCA	alt_2537_fdr	26	54	40	27	68	34	43	37	57	16
TTGTCGTATGCAACCA	alt_2537_fdr	59	57	69	65	61	60	70	57	61	48
ACCATCATTCACTGTT	alt_2537_fdr	11	25	20	19	21	17	17	22	19	14
GTGATGGTGAGGAGTA	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAAGAACCTTTCT	alt_2537_fdr	8	27	10	10	25	7	15	19	20	9
ATTCTTGCCTCGGGGA	alt_2537_fdr	19	12	20	13	9	12	12	11	16	17
GTCTACCTAACCAGGT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCCCCTGTTTTGT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGTCGCTCCACTA	alt_2537_fdr	48	60	46	47	51	46	60	44	89	36
TAAAATTCGAGTGTCA	alt_2537_fdr	11	8	17	8	23	12	16	11	20	13
TGATCCACAACAGTAC	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TCGAACGACAGGTATG	alt_2537_fdr	22	20	30	23	19	20	25	27	19	26
TAAGCCAGTTGCGCAT	alt_2537_fdr	55	65	67	70	98	49	89	53	86	57
CAAATTCGTGGGCGTC	alt_2537_fdr	154	206	176	157	222	136	207	152	227	142
CTTTTTCTGTTCCGCT	alt_2537_fdr	50	51	65	43	38	46	68	44	51	45
CTTAACTCATATTAGT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
AAAAACTAAAGTTGAA	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCGTATGCTTGCA	alt_2537_fdr	29	41	36	38	34	41	48	31	39	23
CTCCCACGTCAGGGTT	alt_2537_fdr	0	13	3	4	15	2	10	1	16	0
TTCTACTGGACTTTTC	alt_2537_fdr	128	151	136	110	157	112	145	105	133	88
TGTCTCGGTTCTTCCG	alt_2537_fdr	89	121	124	84	123	100	124	87	123	98
ATACGATTATACGTCG	alt_2537_fdr	1	1	2	5	10	2	2	4	3	2
ATTTAAAGTGACGGAC	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
GCCGAGGTCATTACGA	alt_2537_fdr	8	9	7	8	4	3	4	6	9	2
TTCGCCATTTCATTTC	alt_2537_fdr	14	7	8	7	13	15	15	13	15	7
GCTCAAGTCAACTCGA	alt_2537_fdr	15	14	14	6	17	18	7	12	21	7
TACATTATTCCGCTCA	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGGATGGATTGTC	alt_2537_fdr	40	48	33	32	42	37	53	34	58	21
CCAATGCCTGCTTCGC	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TGGATTCGGTTGGGCT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
GACTGCTAACATGAGA	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGGCCATACTGAT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTTTGGGTATGGG	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TACTCGCATGAAACGT	alt_2537_fdr	3	5	1	6	10	3	9	1	5	5
CTACTGATCTGAATTG	alt_2537_fdr	41	56	44	55	47	31	49	35	51	25
ATTTATCCCACCAAAT	alt_2537_fdr	25	20	30	18	32	28	23	25	27	16
TAATTCTCGCTCTTAT	alt_2537_fdr	94	74	93	101	91	95	91	68	91	103
TGGAGAGGCTTTTCAC	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCATTGGAGCCAG	alt_2537_fdr	24	30	39	37	29	21	32	17	25	23
ACTCTACGCCGTAAGT	alt_2537_fdr	0	0	0	0	0	0	0	0	0	0
TATAATTAGTCGTAAA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCCCGCCACTGG	alt_2537_fdr	9	37	15	14	27	7	37	15	58	12
GATTGGTTGTTTTCGT	alt_2537_fdr	29	35	33	43	46	31	47	27	37	29
ATTAATCGTCTCCTGC	ref_5944_new	61	62	66	57	74	50	69	58	90	52
TGAACGCGCGCAACGT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CCACTACAACGTACTT	ref_5944_new	6	6	2	2	7	3	7	1	7	4
GGGACCGATCTTAATA	ref_5944_new	34	45	22	38	69	34	49	24	46	49
AGGCTATGTAGCCATC	alt_5944_new	36	67	54	39	49	32	56	27	60	34
AGCTTTTTTAACGATC	ref_5944_new	4	15	4	4	9	5	16	3	12	3
TGAGCTTATTTCGGAT	ref_5944_new	19	37	31	23	25	31	31	11	36	19
ACTCGAACCGAGGTCC	ref_5944_new	1	10	7	3	16	8	14	6	21	4
GTATTTTTTTAATCTT	ref_5944_new	44	55	53	46	46	36	65	44	76	43
GTCCACCGCTGGAAAC	ref_5944_new	52	77	61	65	89	49	91	48	84	43
ACGTATCTCACAAAGT	ref_5944_new	5	4	4	4	10	4	3	7	6	3
CCTAAGTGGTCAACAC	ref_5944_new	2	1	2	2	0	1	1	1	8	2
TCCCATTCTCGTTAAA	ref_5944_new	1	4	7	1	2	1	5	2	2	1
TAGTACGCAAGTCACT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
ACTTTGTGGCCATGGC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
ACAAACGCTCTTTTAA	ref_5944_new	0	0	0	0	0	0	0	0	0	0
ATTCAGGGGTTTTGTT	ref_5944_new	3	4	8	9	1	1	7	2	3	0
GTCCCTAGAACAGTTG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CCAGTGAGCTTATTCG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CTCGTTTGTTGTGCAG	ref_5944_new	47	107	58	48	107	49	116	39	103	35
TTGTTGGGCTCGAAGG	ref_5944_new	5	8	9	3	9	8	5	5	3	4
GCGCTTCTGCGTTGAC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
ATAGCCGTATTCAACC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
ATTGCTACCAGCCTGG	ref_5944_new	38	65	61	68	80	46	76	50	91	40
CTTCCGGTGATTACCC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CTTGCTACTCACGCCT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CCTTCGAAATAGTGGA	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CTAAGCGTCTACCCTT	ref_5944_new	7	21	10	11	27	16	31	8	21	5
TTCGACCTCTTGTGTC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CGCCTGTTACAGCGGT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TAGATGGGAATAAGAG	ref_5944_new	21	30	28	28	39	29	23	30	45	24
CACTTAAGCATGTACC	ref_5944_new	3	3	2	0	7	1	1	3	5	0
CCTATCCAGTGTTTTG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TCAGACCCAATTGTGC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TATTCGCCTGATAGCC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TATGGCGATTCGGTCT	alt_5944_new	327	424	363	371	438	321	471	370	491	277
TTACACATACTTCTGA	ref_5944_new	0	0	0	0	0	0	0	0	0	0
AATACCTGCGCGAGGA	ref_5944_new	34	49	38	34	62	45	70	40	55	43
CGCAGGTAAAATATAA	ref_5944_new	0	0	0	0	0	0	0	0	0	0
ATTGTAGCGAGTTTGT	ref_5944_new	22	46	20	21	39	21	46	23	44	32
AGTTGAGCCCTCATTC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
GAGGCATTGTGTAGCT	ref_5944_new	16	22	16	14	18	17	33	8	25	12
CTGGAAATGAGATTCT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
CCCATTTTTTGTTAAT	ref_5944_new	55	130	82	80	109	60	148	70	165	52
GATCCTCGTGCGACGC	ref_5944_new	7	11	9	12	11	4	7	10	17	2
GGGATAGTTCGAATTT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
AAGCCATCCGCCCTCT	ref_5944_new	13	25	14	13	22	18	27	7	28	17
CAGCTATTGTCCCGGT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TTTTCGTTTACCCGAT	ref_5944_new	11	20	16	13	16	8	35	10	18	9
TGTAAATTGGCTGCCG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
AAATAGTTAAGGGGGG	ref_5944_new	38	54	45	43	60	24	59	43	64	40
TCACTCGTGTATAGGG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
GTTGTCAGTTTTAAGT	ref_5944_new	5	8	4	4	7	5	11	5	12	2
CTATATGGGTTTACAA	ref_5944_new	34	58	30	33	60	23	61	32	46	27
GGTTTACAGGAACAGC	ref_5944_new	30	27	35	19	42	31	35	29	38	36
CCTGATCCTACCGTAA	ref_5944_new	41	58	70	57	79	48	52	46	83	33
AGGGTGTAGGCCTACA	ref_5944_new	44	57	35	29	69	29	63	23	62	27
CGGCCTTGAATTAACT	ref_5944_new	7	21	16	11	19	7	24	7	16	5
ATCTTTGCGACACCGC	ref_5944_new	6	13	10	13	14	5	5	6	11	10
TCTTTCAATTTTACAC	ref_5944_new	14	29	17	24	29	20	16	13	34	14
TGGCTGAGTTAAACGA	ref_5944_new	23	25	28	15	34	16	22	13	20	17
TATCGTGCCAAGTTTT	ref_5944_new	24	41	31	27	32	25	41	22	59	21
CATCTTCCCCCTTTTG	ref_5944_new	0	3	0	0	8	1	7	1	6	0
TGTCTTGCCTTTCAAC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
GTGGTTCATTTGCTTA	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TATGGTGTTTTTACAC	ref_5944_new	28	51	30	28	48	26	49	24	70	25
GTAATGATTCACCCGG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TCTTACTTGTTTCAAA	ref_5944_new	109	202	131	110	207	141	221	132	230	95
CCTCTGGTGATTCTCA	ref_5944_new	9	29	9	6	33	10	32	9	20	9
TGCGGATGTAAGTTGG	ref_5944_new	7	23	14	10	24	13	25	11	23	11
TTCTCTCTGATTTCAG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TTGTTTCTTATTCCCA	ref_5944_new	24	19	28	38	33	25	25	19	28	35
TTCTATATCGATGTTC	ref_5944_new	6	10	9	14	20	5	21	6	8	10
TTTTCGCCGACATTAT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
AATTCGAAAGGGGTTT	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TGTAATATCGTTTCTC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
GTACATCGCATATGCA	ref_5944_new	38	45	36	24	38	34	53	19	54	36
CTCCCACTCAAATCTA	ref_5944_new	18	27	8	13	29	12	30	11	22	4
TCGCAGGCGGTTTAGC	ref_5944_new	39	57	43	39	55	31	64	40	60	37
CATACCGGTTAAGTTG	ref_5944_new	11	9	14	5	27	6	15	5	12	3
ATCTTGAACCATCCTT	ref_5944_new	18	27	25	32	22	23	26	26	23	24
GTGCGTATATTTATGT	ref_5944_new	17	22	19	18	23	12	29	10	20	17
TTTGATCCAAATATAA	ref_5944_new	90	111	103	70	96	80	133	79	149	57
ACAGCCTGATAGGTTA	ref_5944_new	0	0	0	0	0	0	0	0	0	0
GTTTATGCCCGTAGCC	ref_5944_new	26	36	32	32	27	24	41	13	41	24
TCTATCGACCTCGCAG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
GACGTATGTCCCGTTG	ref_5944_new	14	17	13	12	24	6	16	18	24	13
GGCTTGTTATACTTCC	ref_5944_new	13	13	16	12	19	10	9	6	22	16
TCTCGTGTATCAATGC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
GTCCTAATCTGGCGAC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
ACCAATTCGCTCGTTC	ref_5944_new	14	28	22	18	23	23	31	20	32	16
GCTTACGTATCATTAA	alt_5944_new	55	132	109	68	109	77	115	64	126	62
TCCACTGATTTCCCAC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
AGCGGCAAAATTTCGG	ref_5944_new	197	346	267	221	313	198	361	237	330	199
GTTAATATAGGTTACT	ref_5944_new	44	68	52	43	82	31	84	39	68	45
CCTTCGTCGATCGTGC	ref_5944_new	26	46	34	25	64	26	65	24	63	32
TGAACTTAGATATTTC	ref_5944_new	88	123	90	76	136	80	133	66	130	91
TGGCCTAGCAGTTCTC	ref_5944_new	3	7	1	7	1	2	7	1	6	8
GCGAAGGGACGCAGGG	ref_5944_new	1	5	1	1	3	2	2	0	3	4
ATCAAATTAGTAGGTA	ref_5944_new	6	8	7	6	14	8	10	10	8	7
AAGAATAATTCATTGG	ref_5944_new	46	64	62	47	67	48	84	46	94	35
GTCCCAGCGTAAACTC	ref_5944_new	0	0	0	0	0	0	0	0	0	0
TTACCGACGCTGTTCG	ref_5944_new	0	0	0	0	0	0	0	0	0	0
AGTGCCCCGCACAATA	ref_5944_new	0	0	0	0	0	0	0	0	0	0
AAGTCTTCTAACTTTT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
GGCAGTAATTGTGTGT	ref_5944_new	90	133	109	98	142	99	161	114	148	72
CGGCCTTACCAGCTTA	ref_5944_new	19	56	38	31	55	26	58	23	43	24
TGTCTTTATAACACAG	ref_5944_new	12	8	15	9	7	9	12	7	21	7
AGAGGTCAAATATTAA	ref_5944_new	19	20	18	23	26	27	21	14	25	12
AGTCACAGCATCGGTC	ref_5944_new	0	9	2	6	5	2	7	3	8	2
TTCATGGTATTTCGGG	ref_5944_new	65	78	75	49	95	77	121	50	102	73
ATGACTAGCCCATGGG	ref_5944_new	15	13	8	4	19	9	11	11	18	7
CTACATGACCCCCTAT	ref_5944_new	14	30	19	17	26	23	23	11	25	17
GTTCCGGTTCTATTAA	ref_2989_fdr	85	55	109	100	64	71	58	87	76	88
CATCTAGCTTTTTACA	ref_2989_fdr	272	177	338	278	178	240	183	274	188	252
TCTTCTGGTTCAGCGC	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAAACATGCCTCA	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TTATCAGAAAGTAATC	ref_2989_fdr	13	8	13	13	12	8	8	13	9	13
CACCCGTCACGTGTCG	ref_2989_fdr	13	10	4	8	6	5	7	9	4	15
GCCCATATGCTTCCTC	ref_2989_fdr	46	34	71	72	28	44	35	51	45	43
TCCTGATGGGCCCGGG	ref_2989_fdr	53	30	72	58	38	66	40	60	34	50
AAAGGGTGTGTCAGAT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TCTACTAATTAGTAGA	ref_2989_fdr	94	57	121	70	61	84	53	79	69	61
TAATGTCTCCATAGGT	ref_2989_fdr	66	38	71	55	27	69	44	59	37	72
TCATACACGAGGCCTT	ref_2989_fdr	29	26	41	55	27	22	24	33	21	36
GTAACTGCACTTCCCC	ref_2989_fdr	5	9	4	4	5	2	10	1	10	1
GTTCCTTTTTTGTACG	ref_2989_fdr	11	6	12	10	2	4	6	2	9	5
ATTGTTCGCCAAGCTA	ref_2989_fdr	460	288	539	449	305	464	332	453	309	421
TAGAATGCTGGTCCGT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GACGGAACTTATATCT	ref_2989_fdr	50	25	59	42	17	35	23	47	22	33
CAAGGGTTACACACCC	ref_2989_fdr	210	156	232	205	169	222	173	186	186	160
TCCTTGATTCCTGCAC	ref_2989_fdr	133	76	190	126	112	126	99	156	93	137
TAGGTTAACAGTGTCT	ref_2989_fdr	146	91	195	177	100	152	98	151	89	129
GCCTTTTTACTCTATC	ref_2989_fdr	70	50	91	90	57	74	59	68	68	67
GGACCTATTGGAGGTT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TGATGTTAGGCCTGAA	ref_2989_fdr	114	60	163	169	72	121	62	130	67	123
GAATCACATCATAAAG	ref_2989_fdr	193	97	206	185	98	175	100	159	102	175
ATACGTGCCTTCTTCT	ref_2989_fdr	78	41	113	84	42	74	36	87	32	71
AATCATCAGGGTTTTA	ref_2989_fdr	2	3	2	7	4	1	2	1	2	3
CAGCCTGGCCAATCAG	ref_2989_fdr	31	17	38	52	36	25	31	30	34	28
CGGCCAAGTGAGTGGG	ref_2989_fdr	113	69	124	127	64	124	83	123	64	95
GCAGATCCTCGGTCCT	ref_2989_fdr	0	5	1	4	4	4	3	1	2	3
TCCTCATTATTCAGCT	ref_2989_fdr	32	29	47	38	14	52	12	49	15	37
TATACGGCCCTCTGCA	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTAAATCCTTGC	ref_2989_fdr	54	34	61	52	31	43	26	50	33	33
TTCTCGCTACCCGGTT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TTCTACACAACGGCGG	ref_2989_fdr	333	216	369	374	164	307	204	309	238	306
GAATTTATATTTTCTG	ref_2989_fdr	65	36	71	45	29	67	30	49	34	47
CCTAGTCAGTAGACGT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GAAGTATGGTTAGGCT	ref_2989_fdr	19	7	20	18	2	8	7	12	20	17
GTTTAATTTTTGATGG	ref_2989_fdr	27	16	27	29	20	28	20	26	18	33
ATGTATAAATGCCCTA	ref_2989_fdr	10	4	22	18	9	19	1	5	3	10
TCCTAGACGCCAGTCT	ref_2989_fdr	64	40	82	78	49	60	51	77	45	58
CAATTATTTTGGCTAG	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTTTCCAGGAGTA	ref_2989_fdr	5	4	9	15	4	4	4	13	5	6
ACACCTTGCGCGAGCT	ref_2989_fdr	30	22	40	47	29	30	33	22	35	24
GCATCCTTGCAGTTCT	alt_2989_fdr	70	36	72	52	34	60	38	53	30	74
TTGGCATGACCCCTTT	ref_2989_fdr	31	19	47	28	20	38	25	33	27	25
TCTGGCTAATGCGTAA	ref_2989_fdr	126	69	161	129	83	116	61	115	86	120
AATGCTTATCGAAACT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TCGCACGACAATCATG	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCGCCCGCTAGG	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TAATCCAACTATTATC	ref_2989_fdr	83	28	81	87	35	58	47	55	45	76
AAGTATTTTTGGATGG	ref_2989_fdr	14	7	26	20	12	12	10	19	16	7
ATTCAACACCCTTTTA	ref_2989_fdr	65	33	104	79	39	62	40	78	37	45
TAAACTTCTTTACTTC	ref_2989_fdr	34	26	59	44	21	46	16	40	19	29
AATCAAATTGTACATT	ref_2989_fdr	83	40	125	119	52	103	71	105	54	95
ATTATTCAGGGGTATC	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCAACAGTTGACA	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGTACTCCGTTTA	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
CACCTAATATCGTTGC	ref_2989_fdr	66	99	136	137	93	87	107	106	93	108
AATTTTGATAGTTGTA	ref_2989_fdr	23	21	31	23	3	22	18	23	17	17
CTAGAGCGATGTTTCC	ref_2989_fdr	120	99	157	110	83	123	91	117	75	115
GTGGTTTTTATCATTT	ref_2989_fdr	26	10	34	44	3	16	10	23	15	28
TAATGCTTTGTTTGAG	ref_2989_fdr	147	95	147	164	89	129	90	139	97	148
CGTCCTCGGACTATGT	ref_2989_fdr	142	83	159	148	101	148	76	116	105	137
GGAATTAGCGATTTTT	ref_2989_fdr	77	46	91	88	57	74	56	67	56	62
GATCAGTGCATCAGTT	ref_2989_fdr	125	92	158	132	86	120	72	118	89	107
CAGTTTCACAGGAGCT	ref_2989_fdr	1	1	2	4	0	3	1	1	0	0
TTGTAAACTCAAGCTA	ref_2989_fdr	35	19	41	32	23	29	26	41	22	28
CAAACATCGGGTTCCG	ref_2989_fdr	69	51	75	82	33	75	42	60	49	58
TGCTCATGAGGTGCTG	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGAATTCTGCATC	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCTGCTCTTGACA	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TCGAATTCGTGACATT	ref_2989_fdr	156	78	223	163	96	151	121	165	121	178
ACAATTCATCTTGAAT	ref_2989_fdr	195	117	247	186	118	181	152	200	137	157
TCGTCGTGGCCCACAC	alt_2989_fdr	139	74	167	118	65	122	75	102	70	106
ATAAGACTGATATTAA	ref_2989_fdr	60	46	78	68	26	51	46	53	41	61
GTTGTATACAGTTTCT	ref_2989_fdr	121	67	130	141	72	118	77	125	77	97
CGTTTAGAAGGTACCT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTTCTTATTTCCG	ref_2989_fdr	41	31	48	42	24	46	17	35	25	39
ATGAGCCTGTTCGCGC	ref_2989_fdr	47	33	94	76	41	69	34	66	63	55
ATTTAGCCAAAACAAG	ref_2989_fdr	313	173	408	360	143	281	170	309	193	276
TAACCTTTCTTCTTTC	ref_2989_fdr	89	26	128	99	28	62	39	75	35	68
GATGAAAGTATGTATG	ref_2989_fdr	253	149	279	273	123	240	160	209	126	224
TTCAACCTCCTGGTTC	ref_2989_fdr	6	8	5	4	4	6	5	9	9	6
GTTAGATTCGGGTGCT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
AATGTACTGTGCAACG	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCACTAAGGCATT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTATCTGTTCCC	ref_2989_fdr	106	58	134	117	72	117	72	119	57	78
GTATAGATTACGCTTC	ref_2989_fdr	63	42	75	77	41	76	49	72	42	74
TCTTGGTATCCCGTAC	ref_2989_fdr	167	87	236	196	113	153	105	164	117	154
CCCTATTTCTTGTGTT	ref_2989_fdr	29	26	60	47	39	37	49	52	37	32
TCTTCGTCTCTCTGCG	ref_2989_fdr	67	25	71	46	24	43	28	41	26	50
ATAAGTTAGCTCTTGA	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGGATCCGGTAAT	ref_2989_fdr	10	8	15	10	11	18	17	15	6	10
GCGGTGACCTTGGGCT	ref_2989_fdr	65	31	77	83	27	67	31	52	36	52
CTTCCCTGCTTCCTGC	ref_2989_fdr	25	11	23	28	14	24	10	19	20	22
TGTAGCCTTCGCCCAT	ref_2989_fdr	47	31	57	53	22	39	28	51	44	44
GATCTCTTGTTTTATG	ref_2989_fdr	59	44	72	79	31	72	40	78	26	87
GCCTCTTTTCTGCTAA	ref_2989_fdr	72	46	67	61	33	55	41	50	33	62
GACTCGTGTGCATTGT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTACAGCCGGTTG	ref_2989_fdr	41	20	45	51	31	32	21	46	24	53
TTTTAACCCCGGTTTA	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
TCCAATTGCGTCAGGC	ref_2989_fdr	4	11	4	7	4	17	8	13	5	5
TTCTTCTTATCTTACC	ref_2989_fdr	25	27	31	30	36	31	20	35	35	33
TGTGACCCATGGTGCG	ref_2989_fdr	2	3	2	6	0	6	1	4	0	6
GTGTATTCCCTGTCAG	ref_2989_fdr	28	13	23	17	14	21	11	19	14	13
TTGTAGGTTTGTCGTA	ref_2989_fdr	53	21	55	48	36	47	36	33	25	34
GCTAACACATTTCGTG	ref_2989_fdr	45	24	56	43	24	46	22	45	24	39
CATTTGGATGGGTTTG	ref_2989_fdr	31	9	22	32	16	27	12	14	10	25
AGCACTTTGCAGATTG	ref_2989_fdr	21	17	22	33	16	23	22	21	17	17
TGATTTATTCTTACAT	ref_2989_fdr	37	16	52	34	16	34	20	33	18	19
TTTCCATGAAGTCATT	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GATTCAATATGGGATC	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
GATTAACGAACGCACC	ref_2989_fdr	37	20	52	37	38	30	27	49	29	42
ACCTGGGACCAAGGTG	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGTACTCCGTTTG	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATCCCGAACTTC	ref_2989_fdr	102	38	128	105	52	109	53	98	39	98
CCCCGGCCTCGATCGG	ref_2989_fdr	0	0	0	0	0	0	0	0	0	0
AAGCCTCCTCTAGCTG	ref_2989_fdr	52	36	65	70	38	72	33	58	31	70
AGACTAATATGTGGCT	ref_2989_fdr	44	23	55	35	20	34	17	35	27	35
TTGCGTCACGTATCGG	ref_2989_fdr	58	35	79	82	54	66	41	64	40	69
TTGCACATCGTATGGT	ref_2989_fdr	20	15	33	26	15	29	12	14	14	18
GAGTTCTGGCGTCAAT	alt_2989_fdr	21	4	24	16	11	17	11	26	12	23
ATGATTATTAGACAAA	ref_298_fdr	65	51	74	83	49	66	59	85	66	68
CTCATGTCCGTTCACA	ref_298_fdr	8	5	8	17	8	11	11	20	13	12
ATACGAAATGACAGTA	alt_298_fdr	304	152	412	335	145	315	168	308	174	305
TTAGGCTGACTTCCAG	ref_298_fdr	42	21	62	49	20	34	33	40	34	23
AGTGACTCTGTATTAG	ref_298_fdr	27	15	18	23	17	16	8	27	19	18
TCTTATGGTTATGCCC	ref_298_fdr	88	56	95	108	49	97	60	71	64	85
TTCTTGTACCTAACAC	ref_298_fdr	1	1	3	0	5	5	1	1	3	3
TCACGTTGGTTATGCA	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTAACAACAGGTA	ref_298_fdr	107	81	126	118	69	95	65	101	65	82
CCATAACTTGCGATAT	ref_298_fdr	16	9	12	14	18	8	10	22	15	6
TCTGCGGATAGACCTT	ref_298_fdr	17	12	38	36	15	15	12	14	13	17
CTGGGGTGGCGTAGGA	ref_298_fdr	55	37	81	47	39	44	33	59	48	36
GGTGACACTCGCCAAA	ref_298_fdr	39	38	29	38	22	17	26	24	17	17
TCGGCCATCCGTCGTC	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGACCCTAACCGG	ref_298_fdr	41	25	44	42	20	46	25	25	25	37
TGTCATTTTCAGCGCG	alt_298_fdr	71	48	84	79	38	63	68	72	54	69
CCGCTGACGTGGCCCG	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGGTCCACATAA	ref_298_fdr	34	27	45	28	29	28	22	26	19	18
CTTCATAATGCCTTAT	ref_298_fdr	127	75	217	174	86	135	91	145	109	139
CGGAGTTACGGGTTGT	ref_298_fdr	23	21	29	22	19	26	19	26	20	18
AGAATATCTTGGGTTC	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGGGGAACCGCTG	ref_298_fdr	64	35	100	77	47	72	39	71	44	76
CTCGTACGGTTCTAGA	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTCATTTCCTTAA	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TACTACCATGCCAAGT	alt_298_fdr	20	21	34	14	7	14	4	7	15	15
CAGTCCGTCGTTAGAA	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GAACCCAGATTTCCTC	ref_298_fdr	52	39	72	80	46	50	52	57	49	73
TATGACCTACTTGCGT	ref_298_fdr	18	14	24	22	19	26	13	28	24	15
CTGTGTTCGGTGCGTC	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GGTAATTGTAGCTGGG	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
GAGTACCATAGATGTT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GGACTTTAATGCGTTG	ref_298_fdr	52	47	58	67	39	53	39	58	34	44
TTCAACTGTGCCACGC	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GACTGTCTCTAGTGTC	ref_298_fdr	286	231	353	287	256	266	256	323	244	256
TTAATAAAATTCAGGT	ref_298_fdr	68	43	73	69	38	70	39	77	39	67
CAGTATAACGTTGAAC	ref_298_fdr	16	25	28	36	29	18	19	27	24	31
GTTAATCACGGGTTAT	ref_298_fdr	436	257	528	486	263	395	290	438	308	376
AGTGTCGGGGGTACTG	ref_298_fdr	15	20	13	13	15	9	14	8	18	11
TATGAGATTACAGCCT	ref_298_fdr	10	3	17	13	8	7	6	10	20	10
TGGGGTGTTTACCACC	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGAATATCGGAG	ref_298_fdr	27	25	37	23	12	24	22	16	10	25
GGGTCTCGTATCTCTC	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCGCATAGGTAGG	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TATATATTCACTAGGG	ref_298_fdr	41	20	47	44	23	37	19	39	19	25
TTAAACAACTGCGCTC	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TGATGTGAGCGCGTGT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
AGACAATATACTATTT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCAGGCCCGCCGT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTAATACAAGTCT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCGCGAATGCACT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGAGACTCACTCT	ref_298_fdr	49	30	54	49	30	67	39	42	30	48
CCCATGTTATCGATTG	ref_298_fdr	20	16	24	17	16	16	10	10	7	12
TGGGGATCAAATAAAG	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
CGATTCCATCCTGGAG	ref_298_fdr	22	10	20	15	15	15	11	28	8	16
TCGCTGCGTGCTTATT	ref_298_fdr	293	263	379	352	305	293	354	271	311	282
ATGGCGGGAAGGTCTT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
TTGACGCGAATGCACT	ref_298_fdr	172	119	231	182	122	170	113	162	119	166
TAAGTTAGCTTAGTAT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTATATCCCCCGT	ref_298_fdr	11	18	12	13	13	12	23	8	26	11
CCCGTTCGGCATTACG	ref_298_fdr	22	25	34	17	14	23	13	19	18	18
GAGGCAGAACTGCTTA	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GCGGGTGGCCTCAATA	ref_298_fdr	26	23	41	34	13	24	14	33	29	27
CTTGAGATTAGGGGTT	ref_298_fdr	21	10	28	32	18	18	16	22	13	31
GTGTATACACTCGGTT	ref_298_fdr	19	21	23	17	19	20	13	23	20	16
GGCTCTATGTTGTTTC	ref_298_fdr	73	42	68	67	44	47	43	65	43	51
GATACTAGGCTGGTTT	ref_298_fdr	39	23	46	34	20	30	25	34	20	30
CATGGGGATTCACGGT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGAAATGCTCTTT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGTGTGTTAGTGG	ref_298_fdr	14	17	23	26	10	13	14	16	12	13
GAGGACGCCAACTTTG	ref_298_fdr	18	17	20	26	9	22	11	22	12	10
TATTCGCGGGCTATGC	ref_298_fdr	24	27	16	20	22	15	20	23	14	16
CAAATTTTCATGCTGC	alt_298_fdr	70	27	96	103	42	76	41	82	44	75
TGCCTGGCGTGTTTGA	ref_298_fdr	13	7	22	21	17	22	13	20	7	12
GTCCCGCCAGACATGG	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
CAATACTGCGTTTTGT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
CGTACTTACATAGAGT	ref_298_fdr	11	5	4	16	6	12	6	9	12	6
CTCCTATTGCTTGGGA	ref_298_fdr	32	22	41	35	19	29	49	27	35	32
GAATCTATGTCTCCTC	ref_298_fdr	69	49	86	67	47	70	46	58	35	57
GTTCCGGCTCAATACT	ref_298_fdr	16	14	11	10	19	10	11	12	14	12
TTATTTTAAAGTTCGG	ref_298_fdr	30	14	51	30	29	37	19	34	26	31
TGTTCCGGCATGATTA	ref_298_fdr	20	12	29	31	19	25	14	26	19	20
GGACTTGTGAGGCATC	alt_298_fdr	478	204	552	421	209	441	224	426	241	377
GTTGTCTTGTCGTAGT	ref_298_fdr	8	5	7	5	3	3	3	3	9	13
GACCCACGTCAGCCTG	ref_298_fdr	11	13	26	16	12	9	6	10	19	16
TAGTTGGGAACCGGTC	ref_298_fdr	9	4	11	11	7	11	8	14	9	9
TTGTACCAGCGCTGAT	ref_298_fdr	80	44	102	79	64	76	57	68	66	70
TTACACAAGGGCGTGC	ref_298_fdr	9	3	10	3	7	7	5	12	4	8
GTTTGAACACATTATA	ref_298_fdr	14	6	22	12	8	11	7	22	9	15
TCGGGAATCTCGGCCG	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGCCCATCAGCGT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
CATCCCGACACCTTCT	ref_298_fdr	33	20	37	34	28	30	15	29	31	23
TGCCAGGGACCACCAA	ref_298_fdr	55	23	65	50	23	50	37	38	35	34
AAGACTAGCCACGACT	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCTCATCTTTTAC	ref_298_fdr	37	36	47	48	27	50	15	40	35	46
TCATTTCTACCGTATG	ref_298_fdr	62	38	74	54	36	52	34	48	35	48
CTCGGCCTTATATAGA	ref_298_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCCCATAAGCTGA	ref_5198_RC	138	50	197	156	43	139	57	148	54	124
TAGGACCCCCGATTGT	ref_5198_RC	643	176	734	660	194	587	219	587	208	591
CTTGTAGGCATAAGTT	ref_5198_RC	106	54	167	143	54	113	60	117	49	116
ATCCATTGTTTTTAGG	ref_5198_RC	44	7	47	48	11	29	10	33	20	34
TAGGACCCCCAATTGT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GATATTTGGCTTCGGC	ref_5198_RC	21	5	22	30	6	25	14	24	11	21
TCGGGGCGGCTCGGCT	ref_5198_RC	419	117	516	431	119	415	142	358	132	356
ACACGCAGCCAAAATC	ref_5198_RC	59	20	87	91	23	64	53	77	35	58
CACAACTGTATATACG	ref_5198_RC	74	35	113	106	55	106	67	80	50	86
TTGACTGATGTCGCGC	ref_5198_RC	90	30	79	86	21	83	26	91	23	69
CCAATTGTGTTCTACG	ref_5198_RC	5	4	12	12	5	9	15	8	15	3
TCTTTTTGAGGGATGA	ref_5198_RC	50	26	62	64	23	46	16	59	15	28
CGTTGTTAAGTGAGGT	ref_5198_RC	59	17	76	62	14	62	24	62	30	52
ACTACTAAGTTTACTT	ref_5198_RC	13	1	10	7	6	5	0	5	8	6
TCCGCTGTGCGCTTTC	ref_5198_RC	125	67	201	213	68	159	72	176	78	148
TTTCCTTCGATCTTTC	ref_5198_RC	16	5	27	11	7	15	4	19	2	17
TAAGCATCAGCCAGGT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CATGCGGTCTCCCGAC	ref_5198_RC	65	26	79	95	22	77	36	67	24	54
AGAGATTACTTAAATC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TTTTACGCGGGTGCGT	ref_5198_RC	161	58	184	167	68	153	53	156	61	139
AGACGCGCGTGACGGG	ref_5198_RC	157	53	175	183	37	166	48	142	51	145
GTGTATCTGAACGTAC	ref_5198_RC	14	4	22	10	7	12	8	8	7	13
GCTCTTTTCGCTTCTA	ref_5198_RC	31	5	38	39	7	23	4	27	8	42
GGCCCTAAAAGGATAT	ref_5198_RC	136	34	147	117	42	129	30	121	30	88
ATGGCCGCAGTGTGAT	ref_5198_RC	205	69	280	233	61	187	49	166	72	176
ATGGCTGGTTGCGTTA	ref_5198_RC	54	18	54	49	21	52	18	49	17	40
TCGCAGTATCGGTCTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GGTTATTACCTTCGAC	ref_5198_RC	95	31	121	91	35	113	30	94	49	100
ATGGTTGTTTATTTAA	ref_5198_RC	1	0	0	1	0	1	0	1	0	2
TATTACAGGGAATATC	ref_5198_RC	24	9	23	15	3	19	10	20	9	17
GCTCGTGGTGGGATTA	ref_5198_RC	111	29	150	146	39	134	42	102	31	91
ACCGAATTAGCAATAA	ref_5198_RC	191	59	210	171	52	205	59	183	65	172
GTTCCACGCCTATGTA	ref_5198_RC	19	4	27	25	7	13	8	13	8	24
ATACTTGTTATGTATT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
ACAGCCATTTATCGTT	ref_5198_RC	25	13	22	19	11	21	28	29	12	18
GGTTGTCTCGAAGATC	ref_5198_RC	61	14	93	78	25	49	26	71	20	59
ACGATCTCCTCCGTCA	ref_5198_RC	18	22	27	20	12	18	9	24	13	17
AGGAATGTACTCCCTG	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GGAGAGGGGATCGATA	ref_5198_RC	1103	362	1411	1233	354	1147	363	1095	427	1059
TCAAGGGGCGGGATTG	ref_5198_RC	256	98	318	314	88	288	88	270	133	212
ACAGTCTCGTTGGCGT	ref_5198_RC	31	11	40	42	11	32	15	33	16	24
TTCCTATTTTACATCG	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TCTATTTGGTAGATAG	ref_5198_RC	446	135	546	478	150	402	146	405	145	378
TGGGCTCAACTCAGAA	ref_5198_RC	69	15	93	76	20	68	28	74	27	75
GGCATCACCTGCGGTC	ref_5198_RC	78	21	112	115	36	77	19	104	23	77
ACTAGCCTCGTCTGTG	ref_5198_RC	311	136	345	323	151	288	144	281	164	258
CTGTTGCATATGTTAT	ref_5198_RC	144	52	158	138	32	129	60	111	47	113
GCCTAGTCGGGTATGG	ref_5198_RC	85	25	88	93	30	86	42	73	24	89
AGGTATAGGGAACGGG	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GTACACGGGTTTGTCG	ref_5198_RC	53	11	70	40	15	57	17	63	19	37
AGCCCCTCCTGCTCCC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GTAAGGATTTCAGATA	ref_5198_RC	105	39	147	105	63	117	29	113	31	77
AATTTCCTCTCATCCA	ref_5198_RC	401	112	470	394	138	360	136	386	136	362
GTTCTCCTCTGCCCCT	alt_5198_RC	125	53	123	141	48	117	53	113	42	114
ATTGTAGTCGAGACTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CACGGTTACAGAACTT	ref_5198_RC	93	47	126	110	42	99	37	90	39	89
GGTACTTCTGGAGGGG	ref_5198_RC	75	26	97	87	28	84	27	74	15	63
ACCGTGCGTACTTACT	ref_5198_RC	453	152	537	471	152	421	168	438	190	414
AGTTACTGCCTACGGG	ref_5198_RC	64	23	87	86	34	75	24	73	26	60
GACGTGTACACACCTT	ref_5198_RC	253	80	308	254	91	230	89	226	72	221
TTCTGCTCCGATAGAA	ref_5198_RC	205	96	249	218	75	168	68	162	70	175
AGCGGCGCCAGGGATA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TCTATTCCTTGTATGA	ref_5198_RC	46	30	73	61	15	57	23	54	27	46
CTGAGACGCGGTGCTC	ref_5198_RC	117	33	117	116	36	80	37	106	49	92
CAGCCCTTCGCCCACA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TAATCCACAGCTTTCA	ref_5198_RC	324	120	371	354	123	283	114	296	133	278
ACATTTTGGCCCTCGT	ref_5198_RC	44	7	38	54	10	38	16	53	12	40
ATTTGCAGCTCAGTGT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TTCAAGGGAGATATAT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TGACTAACTTTTTAGC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CGAACTTCCTCTCAGT	ref_5198_RC	248	98	308	272	81	212	75	227	98	239
GCAAGTCAGTAACACC	ref_5198_RC	53	25	67	66	20	56	20	49	16	72
CCATTCGGCGATAGTT	ref_5198_RC	199	73	266	218	76	205	75	234	89	200
ATGCCACCTGATAGGT	ref_5198_RC	187	80	223	193	87	159	88	186	88	163
GCATGGATACGGCCAT	ref_5198_RC	24	6	29	27	9	29	5	22	5	15
CCCCACTTTCCCTGGG	ref_5198_RC	13	21	25	16	25	15	23	16	36	12
AGTCCTAATATTCATC	ref_5198_RC	170	56	212	173	47	160	58	141	47	129
GATCTCGCAAAGTGTT	ref_5198_RC	107	43	142	94	35	85	35	94	26	81
CTAGGTTCACTGGATC	ref_5198_RC	214	72	232	239	78	197	73	195	58	163
GATCACGCCAGGTAGG	ref_5198_RC	52	22	59	46	26	34	14	44	25	54
CAGTTGGTACAGGTTC	ref_5198_RC	204	72	217	239	48	181	81	192	62	175
TATCAATACAGTCTGT	ref_5198_RC	48	10	64	42	14	46	17	39	2	42
GTGACGGCGAGCGCGT	ref_5198_RC	39	22	55	51	18	53	20	45	23	48
TCTCGTGTCACACGTT	ref_5198_RC	65	32	113	107	30	79	21	93	33	71
CTTCCTCGCTAGGGTA	ref_5198_RC	43	7	44	35	8	34	9	30	6	38
GCTTTGAGAGAATTAA	ref_5198_RC	71	33	102	105	34	99	41	90	35	104
CGGGCGTTGATATTAG	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GGGAATTACACCAACC	ref_5198_RC	43	26	55	47	8	32	24	35	13	27
TCCTTGTGGCGGTCTG	ref_5198_RC	558	145	620	575	155	475	145	484	152	482
GGCTTCTCCAGTACTT	ref_5198_RC	199	77	310	261	83	190	83	219	100	211
ACACAGCCCATTCGAT	ref_5198_RC	55	78	78	71	87	42	95	53	70	50
CTTTGTAGCGTGTCGA	ref_5198_RC	494	144	519	495	138	440	148	454	144	415
CGTAGTAGGTATAAGC	ref_5198_RC	314	106	367	349	97	297	94	286	109	229
GTCAAGCTCTGTTCCT	ref_5198_RC	24	15	43	42	12	39	12	41	18	27
GTTGAACCTACATGTT	ref_5198_RC	126	39	142	133	60	105	51	112	47	108
TGTTAAATTCCCTTCA	ref_5198_RC	289	84	305	292	85	250	85	251	104	228
GCGTCGGTATGTAAGT	ref_5198_RC	171	64	219	193	51	166	48	190	56	148
TTGTCGTGTCGGTATC	ref_5198_RC	50	18	53	52	21	41	25	43	18	34
CGCAGGCTTCAAATTA	ref_5198_RC	189	48	233	203	64	149	59	200	70	181
TATTTTGCGGATCTCA	ref_5198_RC	35	14	55	40	11	44	13	45	5	41
CTGTGTTACTAGCTCT	ref_5198_RC	80	45	118	107	27	95	33	98	31	80
CTGTAACCGTCGGATT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TAATATTGGTAGCGAG	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CTCTCTGAGAATGCTG	ref_5198_RC	79	27	98	82	29	64	23	59	31	69
TTTAAGATGCCTTTTG	alt_5198_RC	5	5	13	17	3	8	2	9	3	8
TGAATATACGCGATTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGGGTTACCAAG	ref_5198_RC	20	17	29	30	6	26	9	15	1	15
ACTGACTAGAGGATGG	ref_5198_RC	27	6	30	32	9	24	8	22	5	10
CGACTCTCTATTCGCG	ref_5198_RC	48	22	60	37	21	39	20	29	13	46
TTGCATGATATAAGTA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GCCGACTCTGATTAAT	ref_5198_RC	8	12	10	11	5	7	4	13	6	7
CGATCTGGGACCCTTC	ref_5198_RC	75	27	105	92	23	67	32	81	28	63
CGCGACATATGCCTGG	ref_5198_RC	216	71	252	256	66	226	82	209	66	197
CCTTTAATCTAGCTCT	ref_5198_RC	57	52	60	67	49	43	53	51	58	51
GCTGCGCGTAATATTC	ref_5198_RC	60	21	86	71	17	70	21	82	31	57
TGTACTTCCTATTACT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
ATGTGCGGATTATCGA	ref_5198_RC	183	76	220	165	49	157	78	151	59	145
CGTCATGCGGTGGACA	ref_5198_RC	80	32	88	69	27	75	41	95	34	66
TGGAGACACTTCCCAC	ref_5198_RC	68	28	80	63	42	52	33	55	31	62
TCTTCTGCCAGTGCCG	ref_5198_RC	182	72	240	208	71	176	58	173	67	184
TCTCTACGACTTTCTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTGAGCGTAGTC	ref_5198_RC	32	13	38	41	14	43	11	34	15	39
TGTTCCAAGTGCAAAG	ref_5198_RC	20	5	19	15	8	14	12	19	8	12
ATACTCTTATGTACTC	ref_5198_RC	106	33	123	111	42	110	37	110	56	102
GTGGCGTTCAGCTAGG	ref_5198_RC	64	24	79	73	28	87	32	88	32	73
ATTCTAGGGCATTTCA	ref_5198_RC	303	97	321	300	99	273	117	270	91	244
CGTAGTAGCGCAAAAT	ref_5198_RC	65	20	101	72	32	77	29	59	34	82
TAGTTTACCAGTGCAT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCTGTCCCCGTA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
AATCATGGTTTATCGA	ref_5198_RC	43	26	83	69	16	57	14	40	27	41
TTCTATGTCAATTCGT	ref_5198_RC	53	14	91	66	24	58	24	70	38	63
TGGATAGTTCGAACGG	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TAGCTGTCACGCTAGG	ref_5198_RC	66	17	85	68	24	60	28	59	27	62
AATCATTAAATGTTTT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CTATTCGGTAGGATAT	ref_5198_RC	20	10	23	17	9	26	16	21	6	25
CGACAAGTTGGTTGCA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CAACACGGTACGTCTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
ATTGTAACGAAAATTG	alt_5198_RC	434	99	493	440	95	370	116	407	82	386
CGATGTTTTCCTTTCA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GCCAGCTAGTGATCAT	ref_5198_RC	2	1	4	8	3	1	7	2	1	2
TCGCCTTCTTACGTGT	ref_5198_RC	73	25	87	61	15	52	25	52	28	55
CTCTGGTCTATTGCGA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TTTACATGGAGATGCC	ref_5198_RC	18	12	16	25	13	22	2	19	6	11
TTTAGGCGTTAGACTC	ref_5198_RC	154	59	207	177	73	200	60	161	61	175
TCGTCTGCCTTGGGCA	ref_5198_RC	95	40	141	144	41	104	54	115	46	113
TTTGAACGGGCCCCTA	ref_5198_RC	66	13	70	81	29	57	33	70	19	60
GGTCACCGCTACGGAG	ref_5198_RC	26	10	42	45	11	37	11	30	6	24
TTTAATATGCACCGCT	ref_5198_RC	240	85	317	257	81	248	95	267	105	205
CCCTCCGGCTGGTTCC	ref_5198_RC	105	44	132	111	39	90	43	97	52	91
CGGCCCGATTTTCAAC	ref_5198_RC	29	5	35	18	9	16	6	29	8	23
ATTACGGTGAAAAACG	ref_5198_RC	69	20	93	60	25	74	14	56	17	50
CAACACCTATTGAGAG	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CGTCCGAGTTCTAGGC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CGCATCCGTCGGGATT	ref_5198_RC	332	135	371	296	110	290	127	306	131	248
CTTTAAGTTATTTATT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
ATGTCGGCCGCACTTC	ref_5198_RC	5	1	6	2	0	4	0	3	1	2
GTCAGTACCTTCGCAG	ref_5198_RC	28	8	37	32	8	17	8	31	4	17
TCCGGTCTTCTTCTTC	ref_5198_RC	390	116	360	341	121	310	117	274	123	240
CCAGTACAATTTTATT	ref_5198_RC	67	50	99	103	80	102	57	95	69	55
TGTTGTCTAGAACAGT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CTGGTGGCTAATCGCA	ref_5198_RC	153	69	216	198	63	171	63	187	85	140
TATGTGGTATTTATAT	ref_5198_RC	101	30	148	108	34	112	40	98	38	98
TGGTCGACGAGTACGG	ref_5198_RC	96	30	150	129	40	131	36	143	41	107
CGGTATACATGGCCAT	ref_5198_RC	1137	296	1410	1223	346	1098	334	1113	377	974
CGTCGTTACTGGACGG	ref_5198_RC	182	77	257	189	95	187	75	172	92	170
CTTGGCTCGTTTTGCC	alt_5198_RC	129	48	160	155	47	132	47	169	48	123
GATCGTGGGTTGTGCA	ref_5198_RC	177	58	236	213	62	180	62	159	46	156
TTTACAATATGTAGCG	ref_5198_RC	83	23	109	88	21	80	24	73	24	57
GACCGCTGACCGCTCT	ref_5198_RC	89	57	160	145	44	112	56	100	47	86
CCATCACTCGTGTTAG	ref_5198_RC	50	13	66	51	11	39	15	41	19	38
CGGTGCTGTGATGGCA	ref_5198_RC	2	7	6	5	2	7	12	8	6	6
TCGCGTCGCAGTAACC	ref_5198_RC	230	111	266	264	67	192	86	192	93	202
CTCCCCTCTTGGAGCT	ref_5198_RC	50	57	67	37	60	49	54	40	73	34
ATGCCTCCTTAGTGGT	ref_5198_RC	23	13	23	14	6	12	2	15	6	9
TTCGATAGTTAGCATC	ref_5198_RC	6	4	10	17	3	6	4	8	2	5
ACTTGCGAGTTCCACG	ref_5198_RC	96	41	110	113	40	87	38	73	37	57
TTAAATATTCCTGCAA	ref_5198_RC	56	19	76	83	18	64	19	76	15	52
AACGCATGGGCACTGT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CCAACCTTACTCTCTT	ref_5198_RC	178	53	267	197	57	182	51	180	48	175
CTCTTCCTCGACATGT	ref_5198_RC	129	40	140	154	40	110	49	111	61	111
GTCCGGCACGTATCAA	ref_5198_RC	78	37	108	69	44	81	32	65	41	83
CGACGCAGCCTCGGGC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GTTCCGCGAATGCGGT	ref_5198_RC	80	33	97	86	22	86	27	65	28	60
GAAAGCCACGGATCTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CTATGTATGATTGTGC	ref_5198_RC	125	26	122	137	34	115	31	126	51	103
GTTGGTTCACACGGAG	ref_5198_RC	113	41	131	134	36	124	38	115	26	110
GATCTAGAGTAGATTA	ref_5198_RC	18	8	24	17	12	23	7	11	9	22
ACTAATGCTATCTAGC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TGTGACGAATCTCAGA	ref_5198_RC	276	110	258	343	82	294	103	283	99	267
CTGTATAGAATCGTCG	alt_5198_RC	700	307	916	796	311	693	302	673	305	597
GCTTACCGAATCGCGA	ref_5198_RC	14	5	17	21	7	11	2	7	3	6
CTGTGCACAGTGGCTG	ref_5198_RC	18	6	12	27	9	18	7	24	7	14
GGCCTAGTAACAAATA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
GTGTCGCTCGTCGCAT	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TCGTACAATACTGGCA	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CTATGAATCGTGGCAC	ref_5198_RC	60	27	37	55	37	55	16	51	22	51
GCAGCAGTTCACGCCG	ref_5198_RC	18	6	31	28	5	11	7	20	13	15
ATTTCATCTGTACGTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
CCTTACGGTAGGATGG	ref_5198_RC	31	7	46	37	2	27	12	25	9	25
TCTATAGATTCAAATG	ref_5198_RC	85	66	110	109	65	77	61	99	66	91
CAGGGGTTACTTCGAG	ref_5198_RC	32	22	41	37	18	35	12	29	13	39
CAGTGCGCTCGTGTTG	ref_5198_RC	44	19	78	58	20	65	33	53	34	62
CACTAACGCAAAAATG	ref_5198_RC	239	63	248	247	62	206	73	223	77	186
GAGACCCGCACTTCCG	ref_5198_RC	209	59	295	238	64	205	60	225	88	192
CGTCCCGTGCAACATC	ref_5198_RC	92	37	134	104	38	144	34	90	33	82
AATCTATCTTTATCAC	ref_5198_RC	79	19	77	77	29	54	28	51	28	52
TGGAGCGCTGCTATTC	ref_5198_RC	0	0	0	0	0	0	0	0	0	0
TTACCTTGCGGAATTG	alt_5181_upstream	1	73	3	11	42	4	69	4	41	7
GCGGTTAGGCGAAGCT	alt_5181_upstream	259	220	292	234	226	234	248	203	228	235
CTTCGCTTCGCAATTT	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
ATAGATATAGGATTTT	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTTATTTCGGACA	alt_5181_upstream	81	76	89	97	96	91	121	97	114	65
TCCGGAACACAGGTCG	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
CCCGGTTCGGCTTACC	alt_5181_upstream	1	6	1	1	2	0	7	0	5	0
AATGGTATGCCATCTG	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGTTGCGTACCAT	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTATCCTTATATA	alt_5181_upstream	12	23	27	13	19	16	34	17	23	20
CACATGTCCAGAACGC	alt_5181_upstream	36	42	44	32	45	40	46	36	49	35
TTATTGTCCACATCCT	alt_5181_upstream	42	51	52	50	57	54	55	38	45	33
GTAATTGAGGGTCTGA	alt_5181_upstream	1	0	0	1	1	2	2	2	1	0
AGGGAGCTCAGTCCTG	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATTCCTATACCT	alt_5181_upstream	3	1	0	1	6	4	4	2	2	2
ATTCCTTTGTTTACTC	alt_5181_upstream	46	44	66	51	46	61	63	61	59	48
ACACGGATACGAAGAA	alt_5181_upstream	10	12	4	12	10	6	2	9	12	8
GCAAACTGTCTGCCCT	alt_5181_upstream	12	17	12	9	15	15	19	11	9	18
GTTCTTCCTCCAATAC	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
GCAATGATAGGTTATG	alt_5181_upstream	12	4	5	14	10	10	2	6	7	2
CACCCGTCCGGTGGTG	alt_5181_upstream	36	26	22	17	28	17	42	20	29	12
CTTTCCTGAGGGGTAT	alt_5181_upstream	6	11	13	10	7	12	14	10	10	6
GCGTCTGTTCAGTTCG	alt_5181_upstream	34	27	22	41	30	19	36	30	45	26
ATCAAAGCATACGTCT	alt_5181_upstream	22	14	31	20	23	17	36	16	33	20
TAACCAGTGGTGCTTC	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAGTCTATTTTTT	alt_5181_upstream	20	23	29	18	25	35	28	32	34	19
CATCTTTGTTAATACC	alt_5181_upstream	15	17	37	26	22	21	23	13	19	11
TTTTTGATTTACTTTC	alt_5181_upstream	15	13	17	15	8	12	16	5	11	6
TTAGCTACTCTTAGTA	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
TGTATTTACTGTGGTA	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
TTGATATTTATGTCTT	alt_5181_upstream	14	15	17	13	9	13	10	10	9	7
ACGCTCATTGAAGATA	alt_5181_upstream	4	5	10	5	3	3	3	5	4	9
ATCACCCTGCTTCGTG	alt_5181_upstream	40	49	69	67	61	47	58	46	54	40
TACCGTTCGTTGAGTG	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
ACAAGCATCCTCTACC	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCGATCGAAGCC	ref_5181_upstream	88	96	98	79	77	100	122	84	117	81
TATGTTTTTTCTTCCT	alt_5181_upstream	13	7	17	11	7	15	8	6	10	10
GTTCTATAATAAGGAT	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAGGTTATTCTT	alt_5181_upstream	24	36	47	41	33	21	35	27	35	22
GAAGTCTACTCGGTTT	alt_5181_upstream	62	66	64	39	48	35	74	46	65	43
GTCTCGTCATCTCAGT	alt_5181_upstream	11	15	14	6	11	16	10	14	8	10
TCAGCTTCACTCAGTC	alt_5181_upstream	30	22	60	36	21	20	28	19	30	33
GGCGGTTCTGAACCAA	alt_5181_upstream	0	0	0	0	0	0	0	0	0	0
TTTCACGAATCGGTTG	alt_5181_upstream	8	7	5	8	9	4	5	4	6	4
GTCCTACGTCTGCATG	alt_5181_upstream	25	31	26	33	29	20	19	25	45	20
TATCCGGTTAAAGTGA	alt_5181_upstream	66	66	69	73	59	50	64	61	92	67
AAGAGACATCTAGCGC	alt_3332_RC	131	201	129	114	160	117	183	112	241	103
ATGATCGAATTGTATA	ref_3332_RC	20	21	17	12	35	15	26	21	21	17
AGTCTCGATGGTAATG	ref_3332_RC	142	186	191	120	195	128	167	139	177	109
TAGCCTCTTAGTGACA	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
ATATTGACAGGGTCAA	ref_3332_RC	14	23	11	13	15	17	17	19	28	20
TATCTATCCGAATGTA	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
AGGGTAGGCTTCCCGC	ref_3332_RC	8	9	12	12	5	9	9	11	15	12
TGGTCACGGTTAATTG	ref_3332_RC	21	22	22	25	18	17	22	14	29	11
GCTGTCCATAACAAAA	ref_3332_RC	0	0	0	0	0	0	0	0	1	0
CGACATAATATATGCC	ref_3332_RC	2	11	8	6	10	8	5	4	16	4
CCGGCCTCCGATTATA	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
CCGTCTGGTTCAGCCC	ref_3332_RC	2	3	8	8	12	3	6	2	13	3
TAATAGATTACATTGG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
AAGTAACCTATGGAGG	ref_3332_RC	19	27	32	26	31	23	36	23	25	33
TACTCCTGCAGTAGGT	ref_3332_RC	21	67	44	23	56	35	50	31	69	27
TCCTTATAGCCCCTTA	ref_3332_RC	9	26	7	13	21	15	22	5	17	9
AATGCCGTTTGTAAGC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TGTTCTTTTCGCCATA	ref_3332_RC	12	20	6	7	19	11	10	8	23	14
ATTTCAACTAGGAGGC	ref_3332_RC	17	17	18	9	24	12	25	12	34	12
CGCCGGGATTGGCCTT	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GGTGCGATCTTCTTGT	ref_3332_RC	91	106	108	99	100	99	115	69	115	65
GGCTTGACCATAGTTG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TCAGAGGTTGTAACGA	ref_3332_RC	49	98	85	75	121	78	108	73	121	59
ACCCGGTGTTTGTGGG	ref_3332_RC	6	12	12	2	10	4	17	9	14	2
AGTGCTCCCCGTGTTC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GGGTTAGTCAAGGTTT	ref_3332_RC	0	2	0	0	0	0	0	1	1	0
TGTGAGTCCGAGTGGT	ref_3332_RC	1	5	2	0	2	0	0	2	1	1
GTCATTTGGCAATTGC	ref_3332_RC	29	48	47	21	39	18	40	29	38	23
TATCGGGCATTGACAA	ref_3332_RC	11	17	21	14	18	13	22	15	30	9
TAAGGGTTTGTTGTGA	ref_3332_RC	33	74	35	23	58	40	55	30	52	26
TGATTCCCGCCCGAGG	ref_3332_RC	7	12	9	11	21	8	16	10	23	16
GTATACGAGTGTCTTC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
ATATCATTATATTACA	ref_3332_RC	13	28	19	13	26	20	31	13	21	21
GTTAGACGTGTCTCCG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
CGCGATTGGCCCAACC	ref_3332_RC	88	156	124	95	171	91	164	89	168	87
TTGCATGACAATGTCT	ref_3332_RC	47	80	46	54	97	40	91	45	71	44
GCCACCCTCAGCTGGT	ref_3332_RC	0	4	9	4	6	2	0	1	2	0
GTCACTGGATCGTCCG	ref_3332_RC	10	21	14	14	24	17	21	6	15	4
TCTTTGAATTGGCTTT	ref_3332_RC	23	16	14	18	31	11	30	13	24	22
ATCCTTCGCGTACTGT	ref_3332_RC	7	23	8	6	15	7	25	1	18	17
TGCTGCAGCAGTAGGA	ref_3332_RC	31	39	29	27	36	28	37	20	35	42
AGTGAATTTTGTCTGA	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GTGAGCTGGTAAAACT	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GCCGTCCATAACAAAA	ref_3332_RC	428	650	527	444	621	412	706	420	696	399
TCTGTGGTCCTAAGGT	ref_3332_RC	46	75	62	30	61	39	69	35	68	40
CTATTCGTAGGTGTGG	ref_3332_RC	4	4	8	5	6	8	7	4	6	1
TTGTGGGTCCGGTTAT	ref_3332_RC	47	82	62	52	85	57	62	44	94	44
CAGTTCGGCAATGACC	ref_3332_RC	23	62	36	28	67	26	52	25	59	32
CATGATCGATTACAGG	ref_3332_RC	10	12	10	5	6	7	18	10	9	6
GACTGCGTATTCCTTG	ref_3332_RC	9	16	18	11	10	12	11	10	9	11
TGTACTATCTTTTGTC	ref_3332_RC	13	15	12	9	22	16	27	14	20	12
TCTCGTAGTACTCCCG	alt_3332_RC	12	19	19	8	22	13	25	10	26	6
GGCCGGCATATTCGAG	ref_3332_RC	47	45	46	42	51	30	59	28	51	27
ATCCAAGTGGGGTGCG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GATCTTGCCGCGCGTG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TGATCATTGTGCCTTC	ref_3332_RC	2	11	4	6	8	5	16	2	8	6
CCCACATTTTTTGTGG	ref_3332_RC	6	9	4	3	5	2	11	5	6	2
ATGTCAGTAAAACAGC	ref_3332_RC	12	25	20	26	20	19	9	8	15	19
GATATAGTTTCCGTGT	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
CCATGCCTTCCTAGCC	ref_3332_RC	21	27	28	23	24	21	26	27	21	24
TTGTGATCGAGGATGT	ref_3332_RC	9	7	10	9	11	5	10	5	6	4
CAACTACAGCGACACC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
ACGCAGATCAAAGTTG	ref_3332_RC	34	51	49	36	49	36	49	33	51	34
TCCATTACCGAGCTGG	ref_3332_RC	18	29	30	9	32	23	31	14	30	14
TTATGTTTGATATTAT	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGTCCACGAAGC	ref_3332_RC	8	20	4	6	19	14	11	9	15	10
CCGCACCGAGTCGGAT	ref_3332_RC	24	44	23	21	35	25	39	29	38	32
CCAACTTCTTTCCCCG	ref_3332_RC	25	54	29	26	62	21	59	17	46	22
GTACTTGCTTCACTCC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TGTGACACATTAAGGG	ref_3332_RC	2	6	4	6	2	4	2	2	4	0
TTTCTATTGCTCTAGC	ref_3332_RC	5	5	9	4	9	2	6	6	8	4
GCCGTCCATAACGAAA	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TCTGTTACAGTACGTT	ref_3332_RC	0	1	3	2	3	2	4	2	8	2
TATCGGATTTGCAGAA	ref_3332_RC	19	23	43	31	45	23	44	32	52	27
TCGGGTTTGGTAACAA	ref_3332_RC	7	6	10	8	15	13	10	15	31	14
CAATACGAGATCTATT	ref_3332_RC	49	53	43	29	55	39	63	30	57	32
GTCTATATGAATATCA	ref_3332_RC	43	69	57	37	71	30	72	25	79	25
GCTGCCTGCGCGTCAC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
AGTTTTGGCCCGGCTC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TTGGTCGTGGAGCAGG	ref_3332_RC	40	54	41	33	48	48	55	42	66	34
CTCTACGCTCGGAATT	ref_3332_RC	16	20	13	12	21	14	22	22	26	9
CCCCCACATGTTGTAC	ref_3332_RC	22	18	21	19	27	12	30	16	25	16
CTTTCTCAGTAGACTG	ref_3332_RC	3	8	3	3	5	2	3	5	3	6
GACTACGTCTATATCA	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
AAGACCCTACTATACG	ref_3332_RC	15	26	37	19	34	15	28	15	41	21
GATTGAATTCTTTCGT	ref_3332_RC	13	15	19	18	13	20	16	18	16	20
CCGGGGTAACTGTGCG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
TTCACGGTTCTCGGGC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
CCTGTGGGAATTTTTC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
CACGCCCCAGCGCTAC	ref_3332_RC	0	0	0	0	0	1	2	1	0	0
GGCAGCGTCGCTCACC	ref_3332_RC	21	40	37	24	40	29	36	33	38	21
GTACATCTAACCCCTG	ref_3332_RC	5	12	5	2	17	5	20	5	11	3
TATTCAGGGCCTCCAC	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GCTAATACCGGGCACA	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GCCCCAGGTCGTTCGT	ref_3332_RC	4	5	5	6	4	7	17	2	13	4
AAACGGTCAAGTTAGA	ref_3332_RC	74	93	93	96	126	63	130	76	115	60
AGCCCGAATCATGTCT	ref_3332_RC	79	77	101	70	108	93	92	67	93	71
CGTATCAGTATGTTTT	alt_3332_RC	358	421	479	384	417	356	432	351	423	365
ATTTTGTTCTCCCTTT	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GTTGGTAAACCCTTGT	ref_3332_RC	5	5	10	2	13	4	6	4	12	3
TGAATTGGTTGGTTCC	ref_3332_RC	54	69	61	66	89	44	74	41	71	41
TTTAGCGTCCGGAAAA	ref_3332_RC	38	73	36	62	55	51	67	33	69	45
TTCACTTCGTGTTTGG	ref_3332_RC	8	8	9	12	13	4	12	9	8	5
ATTCCCAGTCCTTGCG	ref_3332_RC	15	30	19	16	31	23	33	19	28	23
CGATTCCCGGTTTACG	ref_3332_RC	0	1	0	0	0	0	0	0	0	0
TCCTTGTTGCCCTATG	ref_3332_RC	62	104	66	62	65	63	76	57	113	48
GTAACAAGCCAAGGTT	ref_3332_RC	5	11	14	13	14	8	13	4	25	8
GCCTGGGCGACATTTA	ref_3332_RC	23	44	31	29	35	20	38	25	43	28
ATAGACCTTTCTAAAG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GGACAGTGAATGGAAC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
ATTGTAGTAGCAATAT	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
GTTATTCCAGCGTGGA	alt_3332_RC	20	32	27	27	28	17	21	21	43	16
CCGCAGTTTCAACCTG	ref_3332_RC	0	0	0	0	0	0	0	0	0	0
ACATGGTATCGGAGCG	ref_3332_RC	0	2	0	0	0	4	1	0	1	0
CATTTGCCGTAGTTAC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CGACTGTAATTCGCGC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CTATTCCCTCTTGTTC	ref_5687_new	98	32	124	135	46	93	40	87	40	102
TATCGAGTCTTACGTT	ref_5687_new	20	10	22	24	10	21	8	21	6	18
GTACGAGGGGATAAGG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CAAGCTTTCCGTATAC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TACTGTTAACTCGTCG	ref_5687_new	55	14	64	56	14	57	13	55	22	47
ATTCTCGCGAACGGCG	ref_5687_new	41	21	56	50	17	45	11	34	11	47
AGTAGTAAAAGTCTGA	ref_5687_new	42	8	46	21	10	45	12	38	14	33
ACCTGGGACTTGTGTG	ref_5687_new	186	48	173	150	63	144	55	131	46	155
GACCCTATATTTATCT	ref_5687_new	27	14	44	46	12	44	12	30	17	25
GAGTAAGAATTCTATA	ref_5687_new	72	22	81	91	27	76	24	85	35	59
ACTCCTTATTCCAGAA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TATGGTGGCTTGATAT	ref_5687_new	70	25	67	51	33	56	24	54	15	50
GTGTACGGTCCAGGTA	ref_5687_new	15	4	19	17	7	20	9	15	2	16
GCGCGATCTTATACTC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TGGCTCGATAAAATGA	ref_5687_new	83	48	118	94	42	76	43	63	53	91
CGGCGTTCCTCTTCTG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CGAGATTTAGTTTCAA	ref_5687_new	105	35	94	114	38	98	36	98	39	90
TACTGCTGCTGCGGAT	ref_5687_new	137	34	139	95	54	92	38	101	40	78
TTGCTATGTATATGGC	ref_5687_new	21	9	31	25	13	20	11	23	9	17
TGGTTCAGTTTAGCCC	ref_5687_new	55	18	66	69	23	43	17	43	30	48
GGTCTCTACACCATTA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CCACTATTGTGACCTG	ref_5687_new	35	12	28	31	10	14	17	35	22	19
TCGGGTAGATGGTTGA	ref_5687_new	116	48	107	102	44	103	28	125	35	92
GGACGGCCTTCCTTGG	ref_5687_new	126	37	118	126	28	121	53	104	42	110
AATTGCCACCGGATTG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CGGCCCGTGATGATTT	ref_5687_new	138	41	162	119	52	144	52	129	47	134
CCTTTGGCGAGGGCAG	ref_5687_new	82	38	141	87	36	61	32	93	42	69
ACCTACACCTGCCAAA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TAGTCCGTCGGTTCTA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TAGTACCAAACGCCAT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
ATGTGAAAGTTTATTT	ref_5687_new	155	51	188	161	57	124	60	140	46	135
ATTCTAAGCCGCCTGG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CTTTGCTTTGAGGGTA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
ATACCCATATTAAGTG	ref_5687_new	65	33	98	90	32	67	31	79	20	71
ATTCTACACCCTCTGC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GTTCTGGGCGTGTAAT	ref_5687_new	56	22	71	67	22	53	24	56	27	56
ATTTCGTGAATCGGAG	ref_5687_new	141	68	171	143	78	159	58	140	78	146
TAATACGGTCCTAAAC	ref_5687_new	283	90	407	311	136	283	98	308	123	260
CATGTTTTGGTCAATC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GCCTCTCTTCTAATTA	ref_5687_new	37	19	59	43	13	34	11	47	18	41
GCTAGATCTACCATAT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TAGGCTCAACTGGTCA	ref_5687_new	109	33	102	97	29	94	45	104	28	92
GACCCGGCGTATTATA	ref_5687_new	45	14	59	38	19	38	12	40	14	32
CTCACTTATCGGAGTA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
ATGTCTTTATCGGATC	ref_5687_new	33	8	36	36	7	22	13	28	16	27
ATCTTGATAAATGTCT	ref_5687_new	4	2	5	4	4	8	1	6	2	5
GCGCGAATGTAGCAAG	ref_5687_new	118	33	137	117	45	112	51	115	42	106
TTACAGGATCACACGG	ref_5687_new	51	14	60	50	19	51	23	47	19	43
GTGCATATGGGTTTAG	ref_5687_new	23	7	29	25	12	23	15	29	14	20
ACAGTCCCTGTGAAGG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
AATTCCTTTTCGTATG	ref_5687_new	78	20	108	96	34	71	33	97	32	73
GATGTGTTGCTTTGTC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TACCACCGGGCCCGAC	ref_5687_new	34	17	41	25	13	34	10	26	13	26
GGACTCGAATCCACCG	ref_5687_new	94	30	133	102	32	94	44	102	23	95
TGGCCCCTTCCCGTTC	ref_5687_new	417	97	482	408	92	396	112	366	134	364
TAGAAAGGTACTTTTT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TTGTACCGTTGTAGAG	ref_5687_new	12	7	17	20	7	11	9	8	7	9
TATCGTAACTGACTCT	ref_5687_new	26	6	29	27	13	22	7	20	6	13
CGTAAGGTGGGTTCCA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TCAAGTGGACTTCTGT	ref_5687_new	2	4	3	3	2	3	1	1	6	1
AGGACAAGCTAGGAGT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TGTGGACTCTCACTTC	ref_5687_new	10	19	14	13	22	14	11	15	11	15
CGCCCATCGGGATAGA	ref_5687_new	40	16	41	41	21	36	20	39	20	36
CTTTTGATACGAGTAC	ref_5687_new	72	35	105	89	36	82	36	76	38	51
TCCTGTTTTCTAACTG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TTTCCCTATTACTTTT	ref_5687_new	50	19	70	58	23	57	31	48	28	54
AGTAAAAAACTCCTGC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GTCTCCCAATGCAGGG	ref_5687_new	3	4	7	10	1	6	3	4	0	9
CGCGATCTTTCGGCTA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CCTTCCGGCTATTTTA	ref_5687_new	47	15	53	55	19	57	28	52	38	36
CGCTCGGTAATCGGTA	ref_5687_new	59	25	46	39	16	36	13	48	13	29
AGGTCCTCGTGTGCTT	ref_5687_new	87	42	107	86	36	81	28	72	43	72
GGGGGCGCTCGTTATG	ref_5687_new	157	72	214	179	67	182	52	153	58	144
CTGGCTCGTACATATA	ref_5687_new	65	31	93	62	31	69	31	71	22	55
ATAGGGCGTGGTAACT	ref_5687_new	19	16	46	27	5	14	3	20	13	14
CCTGATGCAGTGCCAG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CTCAGCGTCGTCTCCC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TTCAGTGTTATAATGC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TTTTAGCTGTTAGACT	ref_5687_new	31	16	35	23	8	24	5	20	12	18
GACGAATAAATTAGTC	ref_5687_new	9	7	19	13	6	11	8	14	5	23
CACCCGCTAGACAACT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CCTCTGTTGCTGCGAC	ref_5687_new	42	13	55	51	14	40	20	49	27	49
ACCACTCTTTCGCGCA	ref_5687_new	177	76	201	172	84	151	80	155	77	139
TTAATAAGCTTAAACA	ref_5687_new	5	2	3	4	0	2	1	1	1	5
CCTCGTTTACGTATGA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TACGAGGTCCACCGTT	alt_5687_new	55	24	71	49	20	56	32	52	17	44
CGAGCTTTGGTTGTCA	ref_5687_new	67	20	62	72	26	70	23	56	30	74
TTTCGCCATCCTGCTT	ref_5687_new	89	38	134	120	44	94	40	112	47	73
GCGAATCATATAATGA	ref_5687_new	30	12	26	47	9	46	11	35	14	31
AATTTTTCGAATCTCG	ref_5687_new	182	63	215	164	56	144	65	179	41	168
AACCTAAGATTGGTTG	ref_5687_new	151	46	126	171	49	104	33	116	54	130
ACTATTTCTGGGACTA	ref_5687_new	25	6	16	20	3	12	4	23	15	14
CCTCTCTACTCGCGGC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
ATATCTTGATACTCAT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CACGAGCTGTGCGGTG	ref_5687_new	137	56	180	135	52	137	45	153	56	140
TGAGAACGCTTGTCCT	ref_5687_new	115	35	135	119	45	96	30	110	37	85
ATAGGGAAGGGACCTG	ref_5687_new	22	13	18	27	23	26	14	23	20	20
CTTACGCCGTTCAAAT	ref_5687_new	92	31	101	107	32	92	34	75	42	85
GATGCCACGACCATCC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GTTAAACCCTTCGGCC	ref_5687_new	9	2	15	12	2	12	1	15	6	9
CCGTATCGTGTTATAG	ref_5687_new	19	16	16	10	14	12	21	11	17	12
GTGTTGTTACTTCTTT	ref_5687_new	47	14	53	41	10	31	16	42	16	36
TACCGAAGCCCAATTG	ref_5687_new	34	10	38	34	14	26	16	44	12	32
AAGAGCCCTAATAGCA	ref_5687_new	298	87	365	300	127	257	114	293	115	268
TTAACTGTCAGTAGAG	ref_5687_new	79	28	75	67	24	65	44	56	27	62
CTTAGGGATGTCCTAT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GGCTTCAGTAGTTATA	ref_5687_new	12	3	7	8	6	6	1	13	8	7
GCTCATTGACCCGTTC	ref_5687_new	313	123	375	328	108	270	101	273	102	284
ATAATTCGTACCTTCT	ref_5687_new	41	18	49	55	13	58	8	51	12	66
CTGCTGACGGTATGAG	ref_5687_new	152	63	173	179	60	121	60	148	50	148
TCGCACTTCCTAGTCC	ref_5687_new	1	0	2	1	0	4	0	0	1	3
ATTAGTTACACATTGG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GCCTTTCCCGCCCAAC	ref_5687_new	70	29	88	54	27	74	38	56	36	55
TAGGCATCTAGCAGAA	ref_5687_new	24	13	48	25	11	34	8	39	20	29
TTGCCTGGTATGTGCT	ref_5687_new	27	9	39	38	12	33	11	22	8	20
TTGTAAACTGCACAGG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CAAGCGGACGATTAAA	ref_5687_new	37	15	41	39	16	42	13	38	14	26
AAATTTCCCCAAGTTA	ref_5687_new	27	6	39	25	13	23	19	23	8	33
TTACCGTTCGCTTTCT	ref_5687_new	112	45	162	122	36	119	48	113	44	117
AATCTACACTTAACAG	ref_5687_new	172	40	174	143	59	171	46	123	59	120
CCAGCCAAAAATAACG	ref_5687_new	35	156	55	56	158	45	167	32	171	30
CTGCATGATCTTTCAT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GAGCACTTGATCATTC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
AATCTCGAGCAACGTC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
ACGTGAGCATTGTACA	ref_5687_new	64	30	108	75	41	82	26	68	27	49
TAGAATATCAGCCCAG	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TTCTTTTTTTCGTGTA	ref_5687_new	31	10	43	27	12	35	14	31	13	24
TGAGCATCTGGAACTA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
CTAGTATTTGATTGCG	ref_5687_new	5	9	5	9	5	5	4	5	7	4
GAGAGTTTCTACATGC	ref_5687_new	42	24	45	54	12	39	22	35	14	43
CTGCGACATCAAACTT	ref_5687_new	350	111	465	367	134	334	168	315	135	351
AGTGTCCTGGTTCGCA	ref_5687_new	78	42	100	90	50	90	32	103	51	91
CTCTTCATGCCCTGTT	ref_5687_new	0	0	0	0	0	0	0	0	0	0
AAGTGGTCGCCCCATC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
TGGTGCAGGGCATATG	ref_5687_new	256	78	328	276	82	217	83	248	91	241
ATTTGTCTCTGGGGGC	ref_5687_new	75	24	73	80	20	72	39	79	22	58
GATAGATGGCTGCTCT	ref_5687_new	48	18	60	49	19	48	16	39	12	40
ATTCACCCTTTCGCTT	ref_5687_new	41	9	40	45	9	26	22	25	8	35
CTATTTACTTTAATCA	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GTGTCTGCAACAGCTA	ref_5687_new	4	0	1	2	0	0	2	2	0	1
GCTTTCACTGCGTTAC	ref_5687_new	0	0	0	0	0	0	0	0	0	0
GCACTGCGTTATGTTT	ref_5687_new	76	26	69	60	22	56	21	68	35	54
GATTATCTTATTTTTT	ref_5965_new	62	66	85	52	49	65	50	43	57	45
CTTAGTGACCAAGCTA	ref_5965_new	15	18	16	10	18	18	26	19	16	8
ACGGCTTGTAATGCCA	ref_5965_new	10	6	8	7	6	6	12	13	15	8
GTAGTTGGTATACTAT	ref_5965_new	10	15	10	8	8	6	20	4	16	4
GTTTGCGCCTGTGGCG	ref_5965_new	24	34	37	14	18	23	31	19	47	28
GTGCCCTGACCGGGAG	ref_5965_new	17	12	11	14	16	8	14	17	23	9
CCCGGGTTTAAACTGT	ref_5965_new	4	10	4	10	9	9	11	2	15	4
GTCGATATCAACGGCA	ref_5965_new	4	12	14	12	8	10	9	5	14	8
AATCGATACAGAATCT	ref_5965_new	86	121	104	97	128	75	112	68	126	71
ATGGGATAGCGGTGCA	ref_5965_new	2	4	3	6	7	6	9	2	5	4
ATAGCGGCCTGTGATT	ref_5965_new	19	18	13	14	30	9	13	15	28	15
TTTTTCGCGTTAGTTA	ref_5965_new	19	27	21	36	22	20	41	27	32	21
TCTGGTTATATATATT	ref_5965_new	18	13	24	13	20	11	22	11	17	8
TGTAACGCGGCTCACG	ref_5965_new	0	0	0	0	0	1	0	2	0	1
TCTGATACCCATTTAT	ref_5965_new	5	7	4	6	11	6	9	9	14	4
TATGCCGTTATTCAGT	ref_5965_new	1	2	5	0	0	0	0	0	0	0
TCTGTCAATGTGGCAC	ref_5965_new	4	8	4	5	3	1	3	5	3	5
CACAGTCTGGCATCCG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GTGTATTATTCAATGT	ref_5965_new	14	22	22	15	23	16	21	10	24	15
TGGTTTGAACCGTGAA	ref_5965_new	10	10	4	4	7	3	8	3	13	7
TAACCTGAAGGCTCCC	ref_5965_new	39	40	54	33	47	55	64	30	55	42
GCTGCGCTTGTAACCG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTGTGAACACAAACAA	ref_5965_new	99	86	86	92	116	77	115	80	118	93
TTTCCGTCTGACGTCC	ref_5965_new	17	26	23	20	28	25	32	11	35	21
AATCTAGGGAAACCTA	ref_5965_new	20	16	21	10	17	7	18	8	26	10
TTATGTCCTCCTCGTA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GCAGTGTCGTTCTTAG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TGCAATCTCTTTTATT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTTCTCTGGGTGATAC	ref_5965_new	4	14	8	6	2	6	1	3	4	2
GATCGGTCGTTCCTCC	ref_5965_new	5	14	6	3	11	3	11	5	7	6
AATAGGGCTTTTCCGG	ref_5965_new	14	26	22	22	21	13	17	12	22	19
ACGATATATCTCTAAT	ref_5965_new	9	20	14	12	6	8	14	11	10	14
ACGCTGCTAGAAGTAT	ref_5965_new	2	8	5	2	6	3	8	2	6	5
GAATTGTTGCTGCTTG	ref_5965_new	27	33	33	29	27	30	43	37	48	21
AATTTTGCACTGATAC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GAATCGTGCCAACTAG	ref_5965_new	5	16	10	7	17	14	11	11	9	6
TATCTGGGGGTAGCCC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTTTAATTCAAAATAA	ref_5965_new	77	93	92	74	116	69	88	74	107	62
GTTACTATTCAGCTCA	ref_5965_new	11	9	9	9	4	4	8	9	4	7
GACTACGTAATAGTTC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CGAGTAGGATACGATA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CGAAGGACTCTCGGCC	ref_5965_new	63	60	61	64	89	59	76	72	99	61
GCTTTCATTGCAATTT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTTTCCCGTATTGAGG	ref_5965_new	2	3	10	1	3	6	5	10	10	2
TGACGTACTCGGTTGC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GTGACTCACTGCGCTC	ref_5965_new	11	14	6	10	13	6	7	6	6	8
TCAGGGTGTGCGCCTG	ref_5965_new	0	0	0	1	0	0	2	0	1	0
CCAGATGTTCCAGGCA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TAATCGGAGTCTAACG	ref_5965_new	8	8	13	12	6	1	11	11	8	13
GTGTTGTTCCCCGTAA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CGTTCCACCTGTTCCC	ref_5965_new	4	9	1	6	5	2	8	6	10	5
GATAGTGTGTTTGGTG	ref_5965_new	5	6	4	8	6	5	3	2	13	4
TTACTTTTCGGATCAT	ref_5965_new	14	13	22	24	13	17	19	13	17	17
ACAAGTGATTGCACCG	ref_5965_new	33	32	27	29	30	24	36	18	24	22
CTCCCAATGGCAGTGG	ref_5965_new	18	36	22	24	30	14	32	19	28	15
AGACCGAATCTGGTAT	ref_5965_new	13	19	12	20	11	15	16	13	21	20
AGCTAAGTTACAAATT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTATATTAAAC	ref_5965_new	27	32	24	20	40	32	52	21	42	21
ATACTTGCCTATATTC	ref_5965_new	7	6	4	10	10	7	5	1	9	6
AGTCTAGTTTCCTAAA	ref_5965_new	3	4	3	0	5	5	2	3	2	5
TGTCTTAGGCCCGGGA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CCTGATTCTCGCCCAT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
ACGGACATTGAATTGT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TGAATGATCTCGGATG	ref_5965_new	23	20	24	24	22	23	15	21	12	20
TGTCATATGGTTGTTC	ref_5965_new	10	5	10	8	10	2	8	5	10	6
TGGACAGCACAACATC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
ACAGTCGTGGCTTACC	ref_5965_new	25	60	30	26	42	19	46	26	55	11
TTTTTGAGTAGTCCGC	ref_5965_new	24	36	31	27	24	26	19	19	23	21
ACGGAGAGTCACTCTC	ref_5965_new	3	3	3	5	3	1	3	2	1	2
CGTGTGGCGCTATATG	ref_5965_new	7	11	8	9	23	16	12	14	29	5
TGACATATAGATCCAT	ref_5965_new	22	27	31	25	29	20	27	16	27	15
CTTGACAGCTTTTACC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GTTAATTGTTTCCTAG	ref_5965_new	16	29	34	23	22	20	31	11	24	17
TGTCATATGATTATCG	ref_5965_new	20	31	33	21	24	25	45	30	27	18
TGGTCGATGTATTGCC	ref_5965_new	18	41	34	31	47	17	65	31	68	24
CTGTTCCTTAGCACTT	ref_5965_new	4	1	2	1	3	1	2	2	6	3
GATCCGCTCGACGTTA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GTATTGTCTATTATTT	ref_5965_new	2	1	5	2	5	2	4	2	4	2
AACTTTAATTCTCATG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GCGCTGATGGTACGCT	ref_5965_new	27	23	20	18	17	27	18	19	27	13
CTCTTGTCCGTTGGGC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GCCGGTCGTGTCGCAA	ref_5965_new	0	3	1	3	8	2	10	1	11	0
TTATGAAGGGTATTAG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
AGGCTGTTACTCAAGG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TACTTTAATGGTCCCC	ref_5965_new	17	13	12	15	17	8	26	6	11	7
CGCTGATGGGGAACAA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TACCGCATTATTTAAG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
AGTAAACCAACTTTGG	ref_5965_new	38	44	53	41	56	27	46	41	82	27
TGCGCGCTACCACCCT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CCTTTTAGGATCGAGT	ref_5965_new	47	53	41	37	41	27	42	36	56	27
CTGTCCGCTATGCTTC	ref_5965_new	119	166	118	119	144	102	149	124	146	113
GTCTTGTCGTCCTTTG	ref_5965_new	31	32	32	37	39	30	41	28	29	23
GAAGGTCTGTTAAAGT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TGTCTTGCTTTCTTCT	ref_5965_new	29	22	34	30	30	25	29	20	18	27
GGTCTGGCAAGTTGCA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CTTCCTTCATACGTAA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TACTATTTGTGCATTA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTTTTAAGATGAGGCG	ref_5965_new	1	3	4	7	2	0	6	0	1	4
AAACGATCTTTGGGGT	ref_5965_new	10	11	26	11	12	7	16	8	13	8
GAGCTGAGAGAGAACG	ref_5965_new	11	13	19	13	18	13	7	13	18	5
CTTGCGCGCTTCGGTT	ref_5965_new	66	82	73	63	100	43	90	66	103	61
TAGTTATACTCTTGTT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CATCATCTAATTCCCT	ref_5965_new	17	31	36	30	36	17	25	29	31	18
GCGACCGGTGTAAAGC	ref_5965_new	9	4	19	12	9	9	17	7	10	3
CGTCGTACATGGTTAA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GCTCTAGGCGTTTTAA	ref_5965_new	17	17	6	17	19	21	28	8	19	14
AATTATCCTCCTAGGA	ref_5965_new	14	25	29	26	29	12	23	17	29	15
CCAGTTTGAACGATTC	ref_5965_new	12	16	14	16	19	14	21	13	28	8
GTTCTTACGATACGCT	ref_5965_new	11	10	12	8	6	7	9	8	13	5
CGGTTTATGCGCAAGT	ref_5965_new	13	28	14	12	21	14	24	7	22	9
TTCTTGACTTGGTTCA	ref_5965_new	35	43	44	30	59	27	50	38	51	31
CTCGTCCGCCACTTGT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GCTCCATAAGGAATTC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTTTGTACCCA	ref_5965_new	15	34	34	30	27	31	37	30	39	20
TTGCTGAACAAAGGCA	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TACGCTCCTTTTCGCT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTACTCCGTCGCGTTT	alt_5965_new	19	31	16	25	26	23	28	16	37	21
TGGTTTATAGCGTAAC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CAAACGTCTCCGGCCG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTGTCGACCAAGGCCT	ref_5965_new	6	2	9	4	7	5	4	3	4	2
CTCGTGCTTTTTTGTG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TGGTTCTTTATATGTT	ref_5965_new	29	16	37	25	32	30	31	20	27	20
ACGTTAGGTGTTTATT	ref_5965_new	28	34	29	36	36	30	48	38	35	23
TATGCGTCCGATGCAG	ref_5965_new	25	18	23	17	24	20	30	11	25	25
TTGTACGATGCGTGTA	ref_5965_new	16	19	19	11	22	12	20	17	17	8
TAATTTGGGCTGCTGT	ref_5965_new	67	103	95	93	101	96	104	80	95	60
CAGCATCTCCTTGTTA	ref_5965_new	30	33	40	45	38	38	38	30	52	34
GTAATATTCCAAAACC	ref_5965_new	3	14	13	9	17	11	10	11	18	5
CTGCTTTAACGATCCC	ref_5965_new	1	8	4	3	7	3	4	2	4	1
AGTGTACGCTCAGCGT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTTTGCCGGGTAAAGG	ref_5965_new	3	13	10	5	12	7	11	9	12	5
GACTGATCCAATCGTG	ref_5965_new	12	18	22	10	24	17	25	17	26	13
CGGAAATAGTTATAAT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GATGGGAAGTTTGAAT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
CACAATGTTTGCTCTC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TCAGCAAATCGAAGCA	ref_5965_new	10	8	12	13	7	10	18	5	13	8
ATAGACCAGTGGTATG	ref_5965_new	67	116	67	68	119	80	117	58	101	46
TAGCGAAAGCATCGCG	ref_5965_new	58	49	49	56	56	41	69	33	62	41
TATTCTTCCGGGTAGC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TTGCCGTGGACTCTTG	ref_5965_new	10	13	19	14	25	16	16	17	16	10
CTTCTACATCCACAAC	ref_5965_new	23	48	35	39	36	23	52	30	56	15
TTTCGCAGGTTTTCGG	ref_5965_new	0	0	0	0	0	0	0	0	0	0
TCTGGGGCTATAATTC	ref_5965_new	11	22	17	21	23	11	19	8	16	17
CCGAGAGTTACAGTAG	alt_5965_new	29	42	21	48	37	30	51	17	41	23
CTACTAACCATGACGA	ref_5965_new	52	56	37	44	66	45	57	37	65	50
TTCCTAGTCATTGGTC	ref_5965_new	23	34	30	19	42	24	39	19	40	23
TGTCAGTCTCCGTACT	alt_5965_new	84	126	82	88	124	70	133	92	109	76
CCTCATGACTCCTGCG	ref_5965_new	27	49	34	33	43	29	47	24	43	29
CGGTATCCATCGTTAT	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GATTCATTACTGTATT	ref_5965_new	32	33	49	41	24	32	33	50	28	34
GAGTCCCGGCTACACT	ref_5965_new	1	9	7	5	11	7	14	5	13	4
CCAGTAAGAGTGTCTC	ref_5965_new	0	0	0	0	0	0	0	0	0	0
GACGGTCACTTGTAGC	ref_5965_new	7	6	10	9	14	9	8	5	14	9
TGAGTTTTGACAAATA	ref_5965_new	37	47	47	34	44	27	45	40	47	24
TTTACCTAACGCTTCT	alt_5486_upstream	16	36	25	20	23	15	20	21	19	14
TCATCTCGAATTGGGT	alt_5486_upstream	37	39	37	35	60	40	53	35	49	28
CGTTTAGACGGAATGC	alt_5486_upstream	6	6	8	3	4	0	5	5	2	4
CCCTTTTTACGACGTG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TATAAGGTGCTGATTT	alt_5486_upstream	7	10	3	7	7	4	14	4	7	2
TGTGACTGGTTCGACC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGTGATCTTAGGC	alt_5486_upstream	59	76	71	42	92	52	87	59	81	46
TCTGTCCGCTCGTATC	alt_5486_upstream	19	39	28	18	26	17	33	15	47	19
AACTTTAACCCCGTCT	alt_5486_upstream	54	180	52	51	168	33	209	43	212	42
CGGGAGTGGCTTATTG	alt_5486_upstream	3	4	0	4	4	0	3	2	3	5
GGGGTCTTAACGACAG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTGGGTACTCCAT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AATAGGGTCCCTCTGG	alt_5486_upstream	7	19	9	5	14	10	13	7	14	7
CGACCGGTATGCTTGA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCTACCTAAAATC	alt_5486_upstream	23	76	46	27	56	17	63	31	52	30
CTGAGGCCACAAACTT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGTCTACCGCCGG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTGGGCACATCGG	alt_5486_upstream	43	62	37	33	68	37	81	51	90	35
TCCGCTACCGTGTGTG	alt_5486_upstream	0	7	0	3	1	2	2	2	2	0
TAGCCTCGACCATTGG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AAACACCTGACTGTTC	alt_5486_upstream	16	31	18	14	21	16	41	18	26	12
CAGACTCCGTTGTGTT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCATACCCCGTGTTGG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGCAGGATTGCGG	alt_5486_upstream	18	32	28	21	33	24	36	18	36	23
TGATACAGCGTAGGTG	alt_5486_upstream	1	3	1	1	0	6	2	3	2	0
TAGCATGTAGCCCGCT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCAACTCGTTTAC	alt_5486_upstream	38	51	34	28	43	38	40	25	57	30
TTAAGCTCGCGATGAC	alt_5486_upstream	20	25	25	29	34	19	29	21	25	21
GTTATAAGTCTGGCCG	alt_5486_upstream	20	17	9	12	13	17	13	15	25	10
ACCTGTGTTTGTCAGT	alt_5486_upstream	40	99	38	43	88	42	66	42	96	49
CCTTGTGAGTTAGATA	alt_5486_upstream	16	37	11	17	22	20	23	14	36	12
GCCTTTATCTAGGTAC	alt_5486_upstream	23	49	19	16	65	25	62	15	53	14
TGTTCAGTCTGCCCGG	alt_5486_upstream	52	64	62	56	98	60	92	47	77	60
GTCCGACCTGGCTCTT	alt_5486_upstream	25	25	15	23	35	19	49	16	39	20
AGTACCTGATTGTTCA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TACTTGTTCCCTTAAT	alt_5486_upstream	24	37	40	31	40	29	35	28	46	24
GTTTGGTTGTATGTTG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGATAATATGTGC	alt_5486_upstream	12	25	22	24	40	14	17	13	22	11
CCTTTTCCTGTACCTT	alt_5486_upstream	10	23	10	5	22	12	27	14	21	9
AAGAGTTAGTGTAACT	alt_5486_upstream	43	56	33	26	55	26	69	27	66	22
AAAGACACTGCGTCGT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGCCTGATGCGAC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAAAATGTGCTAA	alt_5486_upstream	24	54	38	41	59	41	40	31	52	20
TAATCACTTGATCTTG	alt_5486_upstream	3	7	7	12	3	2	10	2	8	4
TTCCACACAATTCCCG	alt_5486_upstream	4	30	10	13	18	1	19	8	31	12
TATTGTCGGACACGAG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCAGGTATCAGAT	alt_5486_upstream	28	45	26	30	39	26	44	37	52	15
TGCGGGCCGGGTCTCC	alt_5486_upstream	10	10	17	12	18	12	21	10	25	15
GGAGCGTCATTGTCGC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CTCCACCAGGAGGTTA	alt_5486_upstream	24	21	20	18	35	28	32	19	40	19
AGACGAGCGTACCAAC	alt_5486_upstream	6	5	6	6	10	5	10	0	8	6
CAGCATATATTATATG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
ACCACGCATTCCCTGG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CACTACACAAGTTCAC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TGACCGCCAATAACTC	alt_5486_upstream	16	20	23	14	21	22	25	22	11	18
CCGTTTTTTCCGGTCA	alt_5486_upstream	19	8	18	15	8	12	9	17	6	28
CGAATTGCGTGAATGG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AAACGCATTCGTGGCT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TTATGGTAGTCCGAGA	alt_5486_upstream	12	20	20	20	19	12	18	16	23	18
TTTATATGGCCTCCCT	alt_5486_upstream	33	34	21	21	22	15	45	29	25	22
CTACCATACTTTCTGG	alt_5486_upstream	0	0	0	0	1	0	0	0	1	1
GTCAGGTGTTAGCTTT	alt_5486_upstream	2	0	1	0	1	1	1	0	1	1
GCTACTACGGGTCCGA	alt_5486_upstream	75	85	63	67	102	67	92	36	93	59
TGCATATACAAGAGAA	alt_5486_upstream	17	22	34	28	14	14	22	21	26	20
TCAGCGCTGAAGTCGC	alt_5486_upstream	2	9	4	3	6	6	5	5	5	1
CGTCGACAGGATACTG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGGCATACATTAC	alt_5486_upstream	139	257	183	180	232	150	273	135	268	126
TCTCCTCCATCGCTTA	alt_5486_upstream	33	104	29	20	116	31	100	23	118	18
TCCTCGGTTTTCACTT	alt_5486_upstream	18	15	18	17	20	11	20	12	25	19
GCTTAGGGTCTACCCT	alt_5486_upstream	17	20	16	16	31	14	31	17	33	16
TGATATTTTACCTGAT	alt_5486_upstream	13	31	22	13	44	14	32	18	39	6
TATGCCACCCCATCCC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GATGCCTCTAAACATC	alt_5486_upstream	56	59	63	37	70	39	53	38	68	38
GACAGGTCGAAATACC	alt_5486_upstream	19	13	17	15	13	17	17	14	30	17
AATCCTGCAGCTATGG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTAGTTGCTATCT	alt_5486_upstream	20	46	27	24	64	17	67	23	38	28
CCGAATAGATTGGCAC	alt_5486_upstream	6	36	5	8	38	6	44	5	40	5
GATCGTTGAACGCGCT	alt_5486_upstream	6	23	20	15	13	8	12	13	13	10
TGCATTCGTTGGGCGG	alt_5486_upstream	20	36	30	25	32	18	42	22	48	31
GAAACATTAGGGTGTA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGCTCGGCTCTG	alt_5486_upstream	4	6	3	10	5	3	6	4	6	2
GGATGCCATTTAGTAT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCCCTGCAGAGCT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AAATGGGTCTTTATTT	alt_5486_upstream	46	68	39	40	76	50	53	37	69	53
GTGTGTCTTAATCTAA	alt_5486_upstream	8	13	12	17	5	7	17	10	18	7
TGGGATATAAGCCGAT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TATCTGTGGTCCCTCC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAGCGAACACACC	alt_5486_upstream	25	42	29	25	36	22	49	22	57	11
TCTCATTACCTGCTAA	alt_5486_upstream	13	25	17	13	21	9	30	9	35	19
GTCTTAGTCGGCTAAA	alt_5486_upstream	8	17	15	11	27	4	20	12	26	7
TTCTGCTATTCGAACC	alt_5486_upstream	8	2	6	6	7	9	17	8	15	6
GTACGAGACAAATAAC	alt_5486_upstream	4	15	9	11	7	12	14	6	16	13
GATCATGATTTTTCCG	alt_5486_upstream	2	3	4	5	3	1	6	1	8	8
ATTCCTACTAACATCA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GATTCTTTATGCGATG	alt_5486_upstream	2	9	6	2	9	4	9	2	2	3
CTAGTCTTCGTGACAG	alt_5486_upstream	22	49	23	23	37	21	51	22	34	18
TGACGGGACTTAATGG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GGACACTTCTGACGAT	alt_5486_upstream	19	16	17	10	11	11	11	8	16	3
ATAATCTCTGAGACGA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCAGGATTATACA	alt_5486_upstream	21	41	30	33	36	12	54	21	46	23
TGATTTTAACTATTTA	alt_5486_upstream	0	1	0	0	1	2	0	0	2	0
GGTCGGCGTTAAGTTA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AAACCTCATCGCTTTT	alt_5486_upstream	8	9	4	14	11	6	7	11	9	9
TCTACGTTATTCGCAC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GAACGCAAGTCTTTCA	alt_5486_upstream	137	188	148	146	204	122	215	129	213	118
CGCGTTCTGATTTGTC	alt_5486_upstream	28	43	31	34	31	18	38	24	42	20
GTATTTTGTCTAACAG	alt_5486_upstream	131	157	147	131	162	121	148	123	168	86
AGTTTACTCAGCGCAT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTTCAGTACGTG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTACTACCAATAT	alt_5486_upstream	1	1	1	0	1	0	0	1	2	0
GCAAGTGCAGTGTCCT	alt_5486_upstream	12	22	16	16	14	10	14	7	12	12
AGATCCGCGTTTTCAG	alt_5486_upstream	8	5	6	6	5	3	10	7	10	4
TTATCATGTGACGTCG	alt_5486_upstream	17	27	35	19	23	16	32	27	33	20
ACGATGTCAGTCGCAA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCGGTCCTCATAA	alt_5486_upstream	3	14	9	3	33	8	27	10	18	5
GTCCAGTGTTGTCATC	alt_5486_upstream	7	23	18	19	29	15	26	19	27	16
TTGTATTGTCTTATTA	alt_5486_upstream	0	0	0	1	0	0	0	0	0	0
AAACTTTCGTAGTAGA	alt_5486_upstream	30	21	22	22	20	20	20	16	27	12
TTCAGTTAGGACCCGT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTCCAACCGCCTG	alt_5486_upstream	46	46	70	41	66	49	40	37	59	34
TCTCGTATTATTCGGT	alt_5486_upstream	5	5	6	3	15	4	11	6	14	12
ATTTTGCTTTCTATAT	alt_5486_upstream	3	1	2	0	0	2	1	1	2	2
ATGCGATGGCTTCGGC	alt_5486_upstream	8	5	6	5	11	2	9	4	14	4
TTTTTAGTATTCATTC	alt_5486_upstream	9	19	9	8	17	19	19	9	14	5
GGTGTCAGTCTGTGAT	alt_5486_upstream	7	19	8	10	16	11	17	15	16	8
TGTACCCGTTTGCTCT	alt_5486_upstream	174	183	166	150	252	147	223	140	245	123
GTTTTCTGTAGAATAT	alt_5486_upstream	22	47	20	24	44	28	48	16	39	33
TATCGTCCCATATACA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGCTCGACAGAAG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GTTACTTTTACGACAC	alt_5486_upstream	71	112	95	73	110	88	119	73	131	91
TGTGGGACGACTGCAT	alt_5486_upstream	0	2	3	3	4	3	4	4	5	2
ACCCCCGCATTGCCAC	alt_5486_upstream	4	7	6	8	26	11	7	4	14	6
TCCACATACAGCGATT	alt_5486_upstream	7	13	20	9	19	9	19	15	19	4
ATGTGTGGTATCCTCT	alt_5486_upstream	58	73	68	59	90	55	80	57	79	69
TTCCGTCGTTAGTTTG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CGACGTGAGACACGGA	alt_5486_upstream	204	295	260	187	315	187	315	204	336	194
AGAACCTCGTCTCGCT	alt_5486_upstream	12	17	3	14	14	6	13	14	19	8
CGCCGGGCCTTGTCAA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGCTTTGTCAAG	ref_5486_upstream	2	3	3	4	2	3	6	4	6	2
CTCCTAATGCGACTTG	alt_5486_upstream	18	24	20	18	22	14	34	16	30	15
GTGTCTTTCGACTCTC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TGATTGTTTCAGATCG	alt_5486_upstream	30	43	36	31	30	35	40	19	49	20
CACGGCCCGCCTGCGT	alt_5486_upstream	2	19	2	1	13	3	8	2	15	2
GTGCACAAATGTCTCG	alt_5486_upstream	30	38	27	35	26	21	32	14	44	24
ACAGCACCACGACGCC	alt_5486_upstream	13	33	15	3	24	10	36	17	26	16
CGCTTCAGGCGGGAGG	alt_5486_upstream	16	23	19	12	13	7	15	17	17	8
GTACCCGTGTCCTCCG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CTAAATCTTTATTGTA	alt_5486_upstream	8	5	5	7	5	9	9	6	10	3
ATCGTCTGTAGGAGTC	alt_5486_upstream	21	41	27	21	37	18	36	11	41	22
TTGGGCTCTCCCTGTG	alt_5486_upstream	7	9	9	14	17	12	14	12	15	13
CTGTCTCGAGTACCAT	alt_5486_upstream	36	43	47	24	27	30	52	35	38	25
CCACAATACATAAATG	alt_5486_upstream	25	51	34	29	56	26	46	19	47	18
TGGCTGAACTATAGCA	alt_5486_upstream	42	69	58	47	57	48	61	59	60	47
TCTAAGTTTTGCGCGC	alt_5486_upstream	7	14	15	9	13	7	11	3	14	9
TCGTACAAGGTGTTTG	alt_5486_upstream	25	30	24	19	28	15	25	7	29	13
CTCGTTTGGATCGTTT	alt_5486_upstream	27	47	47	38	60	34	61	29	57	32
TCGCCGGAGGAACTTT	alt_5486_upstream	10	9	23	7	17	8	5	5	19	6
GTATGACGTGTTCTTT	alt_5486_upstream	35	55	50	38	32	51	53	41	63	35
TTCTCAGTCTTGCATC	alt_5486_upstream	23	44	35	25	49	34	47	19	56	26
CTCTGCTGAATTTCCT	alt_5486_upstream	18	29	26	24	39	31	35	22	40	14
TACTTCGTGCTACCAG	alt_5486_upstream	13	30	15	14	17	14	38	27	23	20
AACACTTCGTATGCTT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAAGGCCCCGTCC	alt_5486_upstream	46	55	63	35	63	38	50	46	63	33
GCATTGCTGCGGATGT	alt_5486_upstream	27	57	53	36	37	29	69	21	41	37
GTCATTTGCCTCGATG	alt_5486_upstream	23	36	26	17	23	13	17	15	36	6
TTTTAGTACTTGCTTT	alt_5486_upstream	4	13	8	8	8	7	13	5	11	16
GGGTTCATGGGGGAGT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CAGTCTTTGTTTAGTA	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TACCCTACGCAGTGCT	alt_5486_upstream	24	32	21	17	28	13	28	17	29	13
GTCATATCTCCGCCTG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTCCCTGAACCTT	alt_5486_upstream	30	30	38	23	52	19	38	31	45	25
GTCTTTAAAGTGCTCT	alt_5486_upstream	3	11	10	6	14	8	18	9	8	3
AAGGTTCATGAATTTT	alt_5486_upstream	56	91	67	61	84	57	90	49	91	68
TAATTGCCGGTACGCA	alt_5486_upstream	18	34	25	30	29	19	31	11	36	15
AGGCTGCATTGAATAC	alt_5486_upstream	8	18	8	11	24	2	31	8	33	6
GTCTTCATGAAAATCT	alt_5486_upstream	36	48	51	52	60	42	81	31	55	40
TATGACTTAATTGTAA	alt_5486_upstream	16	20	21	14	27	15	26	12	37	17
TGCACAGATCGTGCCG	alt_5486_upstream	4	12	12	4	11	11	17	6	12	3
CGGCTGGTATCATTTT	alt_5486_upstream	0	1	0	0	1	0	1	1	0	0
TGCGTATCAAATTCCC	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGTTGAATCAATT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGTCATGGGTCAT	alt_5486_upstream	39	55	63	40	46	31	56	39	54	36
GCGTATGATGCACAAT	alt_5486_upstream	2	8	9	8	8	5	10	4	7	14
ACTCGTAGCGGTCGAC	alt_5486_upstream	5	7	2	3	6	4	7	5	11	0
TTGGCGTCATTCTGGA	alt_5486_upstream	11	13	7	9	11	13	14	11	10	7
CCCACCTCGAGCGATC	alt_5486_upstream	5	14	3	6	7	2	10	3	11	6
TTGCACCAGAATGTCG	alt_5486_upstream	23	26	21	18	25	12	24	17	21	20
ATTCTGCTACCAGGTA	alt_5486_upstream	3	5	7	6	11	9	9	3	8	4
GTGTTGCATATGTGGC	alt_5486_upstream	74	145	134	113	175	103	153	98	158	89
CTCGATCGGCGCATCG	alt_5486_upstream	3	4	4	4	10	1	10	3	1	2
GAGTTCAACAGTTGTC	alt_5486_upstream	4	14	5	6	9	4	12	10	16	3
TGTATGTATCTCATCC	alt_5486_upstream	11	16	16	4	12	16	20	10	14	9
TCCTGCCGGTAAGGTC	alt_5486_upstream	5	9	6	3	16	7	19	4	16	5
GCACTACGTTTACGTC	alt_5486_upstream	18	31	15	13	31	11	32	12	45	15
GATCCGATGGTAACCT	alt_5486_upstream	16	9	17	10	15	10	14	16	19	12
CGTTAAAGGGAAATAC	alt_5486_upstream	23	37	39	38	41	28	39	30	26	32
TATCATGCTGTGGACC	alt_5486_upstream	32	57	42	27	36	34	52	20	51	29
AAATACCTTATTTCTC	alt_5486_upstream	32	30	31	37	36	24	37	37	42	26
TACGTCGTGCTTCAAT	alt_5486_upstream	0	1	1	2	0	1	0	0	2	1
CCTCACACATGGACCT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTAGTTTGGCAAC	alt_5486_upstream	5	11	8	7	15	9	12	14	13	7
TCACCTGTGTAATGCG	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CGAATACCACACCGTT	alt_5486_upstream	0	0	0	0	0	0	0	0	0	0
CGATTGCCCGGTCCTA	alt_5486_upstream	9	9	13	3	6	6	5	8	16	3
AAGGCTCGTCTCCTCA	alt_5486_upstream	20	27	22	25	32	21	34	18	23	22
GTGGCCGCTTTCATCC	alt_5198_upstream	2	5	3	2	4	2	3	3	5	1
ATTTTTCTGGTTCGAA	alt_5198_upstream	43	91	61	59	99	46	94	30	97	32
ACTAAAGTAATTAGAG	alt_5198_upstream	13	33	22	18	31	18	33	21	53	15
AAGCACGAATTAGATC	alt_5198_upstream	2	4	9	1	8	1	11	2	5	1
CGGAACGATTGCGTCG	alt_5198_upstream	31	51	36	26	78	31	58	25	67	29
GGGCCAGTGGCTGCGT	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
GTGAATTCCGTACTTT	alt_5198_upstream	10	6	6	5	11	11	10	12	17	9
TGTTCGCAAATTTTAC	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTAGTGCGGGCCG	alt_5198_upstream	4	15	7	2	18	8	13	8	19	8
GCGTGCTCTTGGCTTT	alt_5198_upstream	24	34	27	22	49	25	37	22	60	17
GACTTCCCGATATCCC	alt_5198_upstream	53	91	56	64	90	45	96	50	95	54
ATCAAGAGTTTCGCGG	alt_5198_upstream	0	0	0	0	3	0	0	0	0	0
AACCAGGACCCGAGAA	alt_5198_upstream	19	50	24	17	51	22	47	14	43	17
TGTCGCGCGCATCCCG	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
TGACGCACTATGATTG	alt_5198_upstream	24	57	36	17	48	23	54	19	65	33
CTAGTGCACAGCCTTA	alt_5198_upstream	24	51	32	17	54	28	64	25	55	19
CGTTATCATTGAGCAG	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
AAATAATGTTTACGGC	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGTGTTCTCAATC	alt_5198_upstream	27	57	41	19	54	25	69	21	56	22
TGAGCTCTTTCTGGAA	alt_5198_upstream	14	33	26	17	23	25	37	17	33	18
CTGAGTGCGGGTTAAC	alt_5198_upstream	5	9	3	2	4	1	11	2	8	6
ATTCTACTGGGATCCA	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
GCTACGCCACTGCACA	alt_5198_upstream	9	14	8	4	15	14	16	7	12	9
CAGGGATAAGGCCCCA	alt_5198_upstream	33	30	15	10	20	15	30	12	38	15
TGTATCCCTAAATGTG	alt_5198_upstream	44	73	55	49	67	43	97	22	99	43
GTAAGGGGTATATGAT	alt_5198_upstream	17	32	19	19	29	8	31	8	39	12
CTGGGAATGTACTCCG	alt_5198_upstream	4	4	10	3	22	3	12	7	9	4
TTTGTGGAGCCCACGT	alt_5198_upstream	5	13	8	8	18	11	18	8	22	6
TTTATTCTGCGGTAAT	alt_5198_upstream	3	8	8	4	11	1	8	1	7	1
GTTGAGTATTTAGCGG	alt_5198_upstream	26	25	33	20	32	9	33	18	40	21
GCAACAATCCCTTCGT	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
GGAACCAGGCATAATT	alt_5198_upstream	7	17	11	9	11	10	17	8	29	16
ACTATTTTCTCCTGTA	alt_5198_upstream	59	122	59	52	116	31	131	45	124	41
TCTATTGCCACAGCAT	alt_5198_upstream	25	53	23	26	29	24	44	21	38	17
TTAGCTTCTAGTTTTT	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTCCATGGCCGG	alt_5198_upstream	7	8	16	3	20	5	16	7	9	8
TGAGGCGATCCATGAT	alt_5198_upstream	5	8	1	5	9	3	4	3	3	1
GTAGTTGGTTCGGTAT	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCTACATCCTTAG	alt_5198_upstream	39	58	35	24	48	24	61	21	57	25
CTCAGTGCAACACGTG	alt_5198_upstream	29	88	36	44	73	32	96	26	99	24
TGCGTTTTGTGCCTTG	alt_5198_upstream	24	43	14	27	34	24	38	17	52	19
CCAGACGCACTTTTCG	alt_5198_upstream	3	55	4	7	45	4	50	1	69	6
ACGCAAATCCATCCTG	alt_5198_upstream	50	104	54	52	81	42	94	46	98	44
GGGTTTCTATGAATGT	alt_5198_upstream	17	27	16	11	23	24	18	12	18	13
TTAGTTCCAGTGGCGG	alt_5198_upstream	20	55	33	17	45	18	45	32	36	24
TCCCGCGAGTGTGTTA	alt_5198_upstream	9	22	17	11	12	6	13	11	17	8
CTCGAGTTCTCAATAC	alt_5198_upstream	31	62	34	25	58	35	78	26	75	27
AAGACTTACGTCATTG	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
CATCCAGTATGGTTCG	alt_5198_upstream	15	14	18	13	20	15	22	8	24	12
ACACCGTTTGAGTTCA	alt_5198_upstream	0	0	1	0	4	2	2	0	0	0
CAGTACTTATAGTCCA	alt_5198_upstream	11	26	12	10	35	12	38	13	26	10
ACCGGCGCTTCTAGAA	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGATTCTTTTTGT	alt_5198_upstream	22	37	22	19	36	14	40	11	36	21
CGTCACGTTCATGAGG	alt_5198_upstream	28	66	24	18	44	21	48	30	50	17
AATGAGCAAAATCAAT	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
GCCAACTGAAATTTCT	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
CAAAAGTAGTCGCCGC	alt_5198_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTTCGCTCTATT	alt_5198_upstream	0	1	0	1	0	0	3	0	1	0
ATGCATGCTCGGGGTC	alt_5198_upstream	22	29	25	26	39	24	51	7	45	16
TGATGTCGGCCGTGGG	ref_5198_fdr	57	42	98	73	32	76	42	71	60	58
GATCCTTTTACTCTGA	ref_5198_fdr	23	13	39	31	8	24	11	27	9	22
TTCTCGTGGACTTCGG	ref_5198_fdr	18	6	18	18	10	12	9	10	5	10
GTAGTTCTCCTAGGCT	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTAGGGTCTCAC	ref_5198_fdr	25	15	39	33	6	36	22	32	19	32
CTCATAACCTGACGCC	ref_5198_fdr	66	37	65	52	39	56	31	70	24	74
TCTCAGGGCTGATGTT	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTCGGGTAACTGT	ref_5198_fdr	6	7	10	11	6	6	4	5	0	11
TTTACAGCTTGGGTGG	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGTAGGGAGAAGC	ref_5198_fdr	48	19	71	38	23	36	23	45	19	30
GACGCTCCCTTTGTAT	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGGGTTCACATCA	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTCGAGCACTGG	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
CAAACACATCCTAAAC	ref_5198_fdr	14	9	6	12	10	11	8	12	13	14
ATTGGCCTAGCCCGAG	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
AACATGCAGTGTAGCA	ref_5198_fdr	19	14	36	24	21	33	26	28	22	20
TCTCGTTTTCGAGAGA	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTTTCGCATCCA	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCACATGCGTCTG	ref_5198_fdr	310	165	374	350	166	314	180	315	206	275
GACGTCTGATCTCGGC	ref_5198_fdr	48	38	54	68	28	59	31	50	31	41
AGAATTTGGTTATATA	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGCCACCTCTTGG	ref_5198_fdr	10	14	16	17	16	17	17	13	9	12
CGGTACTCTAAAGCTC	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
TTTTATATATTCCTTT	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTTGTTTGATAGT	ref_5198_fdr	23	10	30	26	24	26	9	20	27	20
GGTAAGCCCGTGAAAT	ref_5198_fdr	38	21	91	56	34	61	29	40	26	52
CTCTAGTTTGTCCCAC	ref_5198_fdr	18	15	35	31	15	44	22	25	21	33
GACCGTAGTTTTATCA	ref_5198_fdr	16	6	8	9	5	17	4	9	9	12
TCACGTGGGCATATCA	ref_5198_fdr	193	114	251	217	95	148	104	176	117	171
ATGATTTGCACGAAGC	ref_5198_fdr	240	193	276	245	175	249	174	250	167	221
TGACTTCAATGAGCCC	ref_5198_fdr	75	23	68	73	24	47	26	67	21	55
ATCCGCCTACACCGAG	ref_5198_fdr	63	37	92	67	28	60	36	56	32	54
CAAAAGTCGCGTTAAA	ref_5198_fdr	34	23	62	32	26	42	18	39	27	47
ACTATGAAGACACATG	ref_5198_fdr	31	26	61	43	19	43	24	46	35	45
ACCTGTCAGGTTTATA	ref_5198_fdr	54	30	89	57	29	50	39	50	46	53
CCATCTCCTCTTCTCG	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCCCTGGCTGAAT	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCATGCCCAAATT	ref_5198_fdr	74	24	70	59	32	76	43	62	31	47
AGACTGTACAAATAAA	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
AACCACGTTCGGTCCG	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
CCGTCTTACTCTAGAA	ref_5198_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTAAGTTGCCATC	ref_5198_fdr	11	1	12	13	5	5	5	2	0	3
GAGCTATCCCAATTGC	ref_5198_fdr	12	10	18	11	11	12	18	9	10	10
GCCCAGTTAATCGCGA	ref_5198_fdr	34	23	70	51	26	43	20	58	25	32
ACTAACCGATAGTGGT	ref_5198_fdr	5	1	8	7	4	6	4	1	6	9
GGGGTAGGTTTATAGC	ref_5198_fdr	36	19	43	29	17	44	24	36	23	31
TTCATGCAATCATTAG	ref_5198_fdr	23	15	31	25	8	20	5	17	6	19
CATAAGATAGGCTCTT	ref_5198_fdr	57	22	81	60	27	49	30	51	32	52
GCAGATCGGTAAAAGA	ref_5198_fdr	26	13	27	21	10	24	10	25	10	22
CCATTCTTCGGTATAG	alt_1252_fdr	6	8	7	11	6	3	8	5	3	7
TTCTCGACCGACGATC	alt_1252_fdr	114	108	125	103	118	99	140	95	137	84
GTCATCTTCGGGATCA	alt_1252_fdr	1	6	6	3	3	9	4	8	3	7
CGTTCGAAATAAAGGG	alt_1252_fdr	61	73	83	89	77	86	72	80	82	79
TACTCGGTCCCACTGT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CTTGATTTTTGCAGTC	alt_1252_fdr	44	59	74	69	61	49	54	45	63	53
TAACTGTGCCTCTTCG	alt_1252_fdr	75	66	87	53	59	80	52	65	66	49
AGTCCCTGCATGTGTG	alt_1252_fdr	60	72	67	66	79	59	90	68	80	70
CGTTATGATCGACCGA	alt_1252_fdr	29	25	30	30	31	38	18	28	28	16
CTTGACAGCTTATTAT	alt_1252_fdr	14	15	17	26	18	19	19	13	15	8
TATACTAAGCAAGCTC	alt_1252_fdr	103	65	109	84	81	84	102	94	107	63
GTCTGCCTAGAGGTAA	alt_1252_fdr	1	2	8	2	3	4	3	3	3	3
GTTTGATAACCGATGT	alt_1252_fdr	10	10	16	10	5	12	14	8	12	9
TTCTGTCAATGTTTTG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCCTATGGTAGTT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GATGGGACTGCTTTTA	alt_1252_fdr	73	48	76	69	64	70	77	49	57	67
AACTTCGTTCTGTCTG	alt_1252_fdr	109	91	113	125	91	87	108	104	86	74
ATGGGCGTCAACGAGT	alt_1252_fdr	158	181	201	182	153	155	183	149	176	145
ACGGAGGCCTGTTGTC	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCCCCGGCGGGAG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCGAGTGCAATA	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCGATGTAGCAGC	alt_1252_fdr	35	35	34	38	35	31	42	37	35	23
TGTTAAGTAATATCAG	alt_1252_fdr	17	17	27	18	14	9	11	18	19	11
GATTCGAGATAACCTG	alt_1252_fdr	8	25	20	15	14	13	9	13	23	13
TATTCCACACAACCTT	alt_1252_fdr	24	35	47	30	35	39	38	47	39	27
GCGAATAAGGGTCTCA	alt_1252_fdr	251	230	312	267	215	225	227	243	219	209
GTTTCATTGGCTCTTA	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
TACATACCTGATTTAC	alt_1252_fdr	21	47	36	40	66	27	67	31	77	29
ATTCCCGCAGTGCATT	alt_1252_fdr	65	59	55	70	62	55	54	56	56	55
TGGTTGTTCTTGTCGC	alt_1252_fdr	33	35	46	36	57	31	51	32	58	48
CTCGAGATTTTGCTTC	alt_1252_fdr	103	73	99	71	93	68	86	82	100	56
CCTTCTTATGCGCATG	alt_1252_fdr	102	75	106	100	88	99	74	114	98	102
TACGCGGCTAACTCGC	alt_1252_fdr	3	6	4	4	5	2	10	5	5	2
AACTTCGATTCAATAC	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTTTCACCAGGTT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
ATGATATTGACAAGGC	alt_1252_fdr	23	17	23	22	17	21	20	22	18	23
CTCTGGTCATTTCCGA	alt_1252_fdr	80	85	84	74	86	71	68	83	73	83
CGTAAAATACAGCAAA	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTTTGACTTCTTC	alt_1252_fdr	177	140	215	144	133	143	148	160	169	165
GATCTGTCTTCGGAAT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTATCCGCCTGAG	alt_1252_fdr	33	33	31	25	21	21	21	14	18	22
TCTAATGGTCGATGGC	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CGTCAATACATTCCTT	alt_1252_fdr	15	10	27	20	12	22	35	14	22	22
TTCCCACACTTGTCTT	alt_1252_fdr	6	5	2	3	2	3	4	1	5	1
TATTATATGGTAGTTA	alt_1252_fdr	209	178	219	206	200	191	185	180	187	182
GGTTGATACTCGGATG	alt_1252_fdr	30	32	38	28	31	30	28	18	39	23
GTTTTTACGGGTTGAG	alt_1252_fdr	134	98	172	134	110	130	129	139	118	93
CTTCGCGCACGCCCCG	alt_1252_fdr	25	58	30	21	69	14	61	16	56	14
TAGTATTGTAACGCAT	alt_1252_fdr	11	9	20	12	6	11	19	23	10	14
TCCAGCTCTAGTCCTA	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGCACCTAAATAA	alt_1252_fdr	174	131	159	182	158	176	139	194	165	141
GAGTGCCTTTCCACCG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGTCTTGCTTTAT	alt_1252_fdr	34	34	38	35	44	40	42	35	31	39
CGTTTCAAGAGCCTGC	alt_1252_fdr	40	48	55	44	44	53	57	48	51	30
TGATTTCTGCGATAGT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CATTGATGCTCACTAA	alt_1252_fdr	72	39	77	70	76	66	56	61	65	67
TCGCGTGAGCGCAGGG	alt_1252_fdr	204	140	227	191	141	178	178	182	175	161
CTATAACTTGTTTGGA	alt_1252_fdr	114	106	128	115	100	93	102	90	150	92
CATGCGACAAGTTTGG	alt_1252_fdr	3	4	6	2	2	2	7	3	6	4
GTGGATCCGGGAGACT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CAACTCGTGTACCGCG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGCCGATTATTCT	alt_1252_fdr	11	21	30	15	25	16	23	24	18	20
GTTACTATATCGTATA	alt_1252_fdr	9	18	6	12	18	10	10	14	14	11
AGTGACTGTCTTGATG	alt_1252_fdr	3	7	9	3	6	3	4	3	3	3
TTGTGTGCCTTTACCT	alt_1252_fdr	46	53	70	40	46	41	48	30	46	35
GGCCGCGTCGTGGGAG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
ACGCTGTTTCTGCTAT	alt_1252_fdr	46	53	69	57	60	49	47	43	40	54
GGGCCAGGGGTTTCTT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCCACAGGTGACA	alt_1252_fdr	6	4	0	1	1	0	3	6	3	2
GGCTCTTCCGCGCCAT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTCTTTCCTTTTA	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GACGGGGTACCTAGTC	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
TTTGAGTCGCTGCAAT	alt_1252_fdr	241	231	317	228	223	225	233	177	253	188
CCCCACAGGGTGACTT	alt_1252_fdr	56	61	41	51	59	49	84	34	71	28
TGGACCCAGTCTACTG	alt_1252_fdr	2	3	4	5	6	2	7	2	3	3
GGCGGTCGGTAGAGTA	alt_1252_fdr	19	12	28	24	20	16	18	24	17	16
CCCGTTTCTGTGACGT	alt_1252_fdr	97	111	131	98	136	91	154	96	142	57
CGCCGGATACGGATAA	alt_1252_fdr	38	26	67	38	35	50	39	31	41	48
GTGTAGAGCTGGCTCC	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTTCCATCTGCT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCATTGCTAGTGG	alt_1252_fdr	64	73	142	90	84	99	85	96	94	106
TCGGCTATACTTCCGC	alt_1252_fdr	11	11	8	5	6	15	8	4	9	6
ACGATGAGCATAGGTT	alt_1252_fdr	20	23	34	39	36	17	44	29	51	27
TCTCCGTCTTAGTGAT	alt_1252_fdr	83	85	87	45	73	69	89	51	94	62
TCCATTTCACTATGTG	alt_1252_fdr	44	53	59	42	30	44	49	32	66	41
TTTGTTTTACCACTTT	alt_1252_fdr	19	10	7	9	11	11	9	10	12	10
GAAAGCCACCCATGCG	alt_1252_fdr	51	48	59	41	46	38	52	48	57	36
ATTGGTATATGGGGAT	alt_1252_fdr	138	166	183	209	151	180	172	164	174	155
TCCGCTTATTTCGCCT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCTGTGCCATGGT	alt_1252_fdr	143	87	169	127	122	129	122	117	129	105
ATTTTTGCTCAGGTGG	alt_1252_fdr	11	8	20	12	20	14	8	16	7	15
CGAAATGAAATAACGT	alt_1252_fdr	46	46	65	79	63	65	58	62	51	54
AACCGTGGGACGTATG	alt_1252_fdr	55	69	59	54	61	52	82	54	54	55
CGTGCCTACCACAGCG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTACTCTCTACGT	alt_1252_fdr	23	28	35	27	34	30	28	17	35	24
TGCATTCTAAGCTGTC	alt_1252_fdr	47	35	51	56	50	53	49	41	49	49
TTGTTTTTGCATGGTT	alt_1252_fdr	25	20	23	17	15	16	18	9	20	13
AAGCTGTTACACGCCA	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGCTTCGCCCCGT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
TACCCCACTACGGTGC	alt_1252_fdr	7	9	11	12	17	11	15	6	14	20
CGCCAGTACATTCGAT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GTAACTTCGATTACTC	alt_1252_fdr	17	18	23	16	17	18	15	19	16	9
TTAACGTCCATCCATT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GACAAATCCGGTTTGG	alt_1252_fdr	11	11	16	9	8	6	9	15	11	10
GCGGAGTGTGTCCGTG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCTGTGCCATAGT	alt_1252_fdr	1	1	1	0	0	0	2	0	0	1
GGCTTACTTGGGCAGT	alt_1252_fdr	16	8	15	15	12	11	9	10	14	13
CTTCGCCAGACGTTTG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGTTATTTAGCT	alt_1252_fdr	106	154	130	121	136	89	148	94	201	84
AAGAGGTAAGATTTTA	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GTACGCCCGGGATGTC	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GGACCGCAGATCTTCG	alt_1252_fdr	40	42	72	45	42	68	41	54	45	35
CGCCCCGCCACTTTTC	alt_1252_fdr	12	21	10	10	18	10	12	13	15	8
TTTCAACAAGTGTTCT	alt_1252_fdr	23	17	23	13	20	16	35	19	25	13
ATTTAGGCTACACATT	alt_1252_fdr	40	35	55	49	47	34	53	42	38	36
GTACTGCGCTTGCTCA	alt_1252_fdr	24	14	14	20	35	15	20	18	19	21
TGTTGGCTAGGTGCCT	alt_1252_fdr	112	106	136	110	87	99	81	87	99	103
GCCTAGTTAACAGGAC	alt_1252_fdr	227	198	285	213	201	189	203	202	241	196
AAGTCCAGATTCTCGT	alt_1252_fdr	94	80	90	87	79	91	94	75	88	66
GCCCACGGCGGAGTTC	alt_1252_fdr	12	9	8	13	23	4	21	5	13	7
CTCTTTCGTGTCGGTT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGAACGTTCGAGC	alt_1252_fdr	57	66	75	87	67	62	60	52	39	67
TCCCGAGCGAGTTATG	alt_1252_fdr	12	12	23	10	12	15	16	9	18	15
GATCGTGACCATACCC	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCTTCCATCTTTG	alt_1252_fdr	18	6	14	13	9	15	14	10	13	6
ATTTGGTAGCTGGCAT	alt_1252_fdr	24	22	33	16	29	22	15	29	23	18
ATGACTGTATTAGGGG	alt_1252_fdr	27	29	34	39	40	21	30	38	25	37
GGGGTCTAGTATAAGT	alt_1252_fdr	4	3	2	3	0	2	2	1	3	3
TCGTGCTTTCCAGAAA	alt_1252_fdr	37	38	47	31	45	25	40	42	65	35
CACCGCTGCATACACC	alt_1252_fdr	40	41	44	41	39	45	34	34	45	34
CTTTCACTATCCTTTA	alt_1252_fdr	12	11	17	11	16	14	19	15	9	14
TGCAAGCTAGAGTTTG	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
ACTTATCGGATCACTT	alt_1252_fdr	21	13	18	15	18	14	23	23	16	24
CTTTTTGTTTCGAATG	alt_1252_fdr	14	13	12	12	9	6	8	11	18	8
GCAGTCTTTTTATGAC	alt_1252_fdr	21	20	39	22	20	23	21	30	31	27
TGTTCGCTTCAAGTGT	alt_1252_fdr	0	0	0	0	0	0	0	0	0	0
GACACTATAATTGCCG	ref_6061_new	16	15	7	3	10	12	22	13	18	6
CGTTAGTGGGCCTGCG	ref_6061_new	24	37	32	13	38	22	24	16	26	17
TTAGGTGGGTCTACAG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GGTTCAACCATACCCG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
AAGCATTATATCACTG	ref_6061_new	0	0	1	0	0	0	0	0	0	0
TAACCCTAGTTCCAAA	ref_6061_new	16	38	30	23	62	19	48	28	41	14
ATAAGCAGGCATGTCC	ref_6061_new	27	34	32	30	43	34	43	25	40	28
TATTCTTAGAGAGGTT	ref_6061_new	1	0	0	0	0	0	0	0	0	0
ATTCGTGGCCCTTAAC	ref_6061_new	12	5	8	6	7	8	5	8	8	1
TGCAGTTTCGTTGCCA	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TGATTACCCTAAATAT	ref_6061_new	7	12	15	6	11	6	13	11	14	6
CGGCTCCACTATTGTG	ref_6061_new	21	61	13	18	78	16	92	11	69	13
TTTGCATGTATAAAAC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CTGCGGTCAGTGTGCT	ref_6061_new	3	18	1	4	16	2	13	2	14	2
TGTCTCAGACGCTTTC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TCTAATTAAAGTGAAG	ref_6061_new	25	26	23	24	23	26	30	16	38	15
TTAGGACCTATTGGCG	ref_6061_new	32	61	47	48	64	38	64	33	72	46
GTCCATCAATCGGCTT	ref_6061_new	13	25	19	23	31	14	32	24	35	17
AGATCGTTAGGGATCC	ref_6061_new	80	108	88	71	106	82	120	53	133	66
ACGATGCTATCGGTTC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
ATGGTGCACCATCTAA	ref_6061_new	6	12	7	9	8	7	7	5	10	8
CTGTCATCGTTTACCT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TTTTTTTTCATGGGTA	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TCGCTTTCGTGGTAGC	ref_6061_new	58	123	95	89	126	63	140	66	151	70
TCTTTACGCCTTGGTA	ref_6061_new	16	17	28	15	26	8	24	11	36	18
GATATCACGCCCAATG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GCGTGGTAAGTCTCGA	ref_6061_new	41	50	39	28	41	33	52	24	43	39
ACAAAATTGGTCATAG	ref_6061_new	26	47	43	20	39	36	43	17	48	27
TTCGGTAAATGTTTTG	ref_6061_new	27	30	19	22	27	16	30	20	24	13
CTCACCTTTAATTCTG	ref_6061_new	40	61	43	26	71	42	77	32	58	30
CGGCCCTTAGCTTTCC	ref_6061_new	9	14	5	4	17	2	6	2	12	6
GCCTGCACGTTTGCCA	ref_6061_new	17	28	15	12	37	6	47	12	31	8
ACTGCAACTTACTGAG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
AGTTCTGCTCCCCAAG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TTTGAGCGGAGTCGGT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
AGTGTTAGGCTTTTCA	ref_6061_new	25	50	35	27	30	32	44	29	50	29
ATTCGGTATGTTATGT	ref_6061_new	20	14	14	15	14	19	13	19	15	14
GAACTCCGTCCATACT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TCATCGATGCTCTGCT	ref_6061_new	68	142	79	50	157	55	173	71	156	62
TAGCTTTTCAATATTC	ref_6061_new	3	2	1	1	9	2	6	2	7	3
TTTCTTGACATCACAC	ref_6061_new	98	141	124	97	142	76	188	66	159	86
CGTGAGTTGCTGCTCT	ref_6061_new	11	27	25	10	21	12	30	27	30	6
CACTGCGAATTACGTT	ref_6061_new	13	32	23	11	24	11	27	20	19	10
AAATGTTCAAATCTTT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TTACGGAACGTTCCAG	ref_6061_new	66	97	85	52	99	52	74	49	93	50
GATCGCGTATCCCTGT	ref_6061_new	18	34	36	30	45	34	45	21	38	28
GCGTGCGCTTCAGGAT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TTACCTAATGGTGGTT	ref_6061_new	0	0	1	0	1	0	0	1	0	0
TGCTGCGCACTATTGT	ref_6061_new	49	100	58	45	67	58	100	59	82	42
CCGAATTCGCGGATGT	ref_6061_new	46	93	70	43	75	59	78	50	93	41
GAGTCCCCTTAGAACT	ref_6061_new	12	11	14	11	9	10	10	8	19	7
CAGGACCGCTCTATTT	ref_6061_new	2	4	2	1	5	1	3	0	4	1
TCGATGGTTGGGCTTT	ref_6061_new	20	41	33	33	44	26	41	29	46	23
ATCCTTGGATTGTCGT	ref_6061_new	20	20	33	17	25	19	26	21	36	16
GTCCTGTTATAGAGCA	ref_6061_new	23	39	29	19	30	17	47	16	37	14
TATTTGAAGGTTGCTT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CACCGTGCCCTTTTTT	ref_6061_new	10	19	23	4	17	7	18	7	18	6
GACCATAGCCAGATTA	ref_6061_new	30	44	36	27	51	36	51	35	40	34
GCCGGTTGAATTGGGT	ref_6061_new	5	17	4	6	9	5	6	8	13	10
GCGAGGTCTAGGATGT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GCTCCATTTTGGCTTA	ref_6061_new	53	52	49	39	43	46	56	36	72	36
GCACTTTATCGTTCGC	ref_6061_new	8	18	15	17	19	14	11	9	24	11
TTTGGGGTTCAAAGAT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CATCATGAAGCAAACT	ref_6061_new	8	23	31	22	15	17	10	10	15	16
TCCCGGGCGCTACGTT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CGGTTTTGCTCGCCAG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TCTGCACTACCAAAGA	ref_6061_new	0	0	0	0	0	0	0	0	1	0
ATCCGGCTGTACAAAC	ref_6061_new	0	0	1	0	0	0	0	0	0	0
AATTGGCAACAAGCGT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GTTTTTGGTTCACGCA	ref_6061_new	32	35	33	29	51	24	52	21	47	28
AGGTGTAAGCCGCAGG	ref_6061_new	4	9	5	6	13	5	9	7	5	10
CAGGCCTCCATGGCGA	ref_6061_new	0	0	0	0	0	0	0	0	0	0
AGGAGCTGTTTTATCA	ref_6061_new	6	21	21	20	21	18	29	18	26	12
CGTTTAGGCGACGAAC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TGGCAAACAACCCTCC	ref_6061_new	31	27	35	34	38	14	38	21	42	25
TACGTTGCCGTGCCTG	ref_6061_new	89	91	81	65	80	69	92	61	123	75
TGACGCTGCCGAATAT	ref_6061_new	66	94	68	68	89	52	74	63	81	49
AGTCTATGTGTTCGGA	ref_6061_new	3	10	4	2	11	7	11	0	20	4
CGGTTCTATCGTATTT	ref_6061_new	81	8	85	76	5	55	13	53	7	56
GCAGTGGGGTCATTTT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CGCATTGACCCCGCCC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GTGGTCAACACGGAAT	ref_6061_new	129	161	164	119	159	105	180	96	207	109
TTGAAATATTTAAATC	ref_6061_new	3	7	6	7	8	6	7	4	13	1
TGTCTAAGTTGACCAC	ref_6061_new	34	46	44	21	47	30	43	31	42	30
ATTACTCTATGCTCTG	ref_6061_new	27	43	39	30	52	28	38	28	40	23
CTTATTCTTCAGGCCT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CTCAGCCACTCCTCTT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CCCCTCTGGCCAACCT	ref_6061_new	19	33	20	11	23	16	28	20	27	6
GACTAAGATGTACGCC	ref_6061_new	72	76	69	60	77	40	77	68	74	74
CAAGTTTTGGGATCCA	ref_6061_new	70	114	98	81	105	67	111	78	127	82
TGTCCAGCGAGGTCGA	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GTCTGTTGTTTAGGGT	ref_6061_new	0	0	3	0	2	1	0	0	1	1
GATATTGTAATGAGAG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TCGAGAACCAGTATAG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
AGTCTAACTTCCCATT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GCCTCTCGTTGATGGC	ref_6061_new	20	20	25	24	32	16	27	17	38	16
TTTTAGCGTTGTACGG	ref_6061_new	25	51	38	44	51	42	50	32	60	31
CCGTATGACGTTTTGT	ref_6061_new	14	31	12	14	27	19	26	18	24	19
TGATCGATGTCCATCT	ref_6061_new	56	89	52	61	88	53	90	53	91	55
TCGATATACTGGGGTT	ref_6061_new	53	35	35	38	54	38	44	40	48	37
GTAAAGATCTGGGGCT	ref_6061_new	4	11	6	3	4	5	11	2	6	1
TTGTGAGTATCATATC	ref_6061_new	18	25	20	15	29	22	31	18	35	18
GCTATAGCGAGTGTAC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
TCATCTAGACCCCTTT	ref_6061_new	0	0	0	0	0	0	0	0	0	0
GTCTTTTGGCATGAAA	ref_6061_new	6	9	1	2	6	2	7	2	6	5
TCCCCCTGATACCGCT	ref_6061_new	37	57	46	46	51	33	51	43	84	30
TCAGACTTTTAGCTTT	ref_6061_new	45	48	48	40	73	45	55	28	64	34
AATTCGTAAATATTGT	ref_6061_new	38	72	34	29	55	41	36	37	74	32
TTCGATCCGTGAAGAA	ref_6061_new	1	1	2	1	2	2	1	1	6	0
TCCCACGTTTTACGTC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
ACTATAATCCCCTAAC	ref_6061_new	0	0	0	0	0	0	0	0	0	0
ATTTTACTCTTTGGTA	ref_6061_new	0	0	0	0	0	0	0	0	0	0
CTCTGGCGTGTTACTA	ref_6061_new	21	31	26	19	32	14	41	21	26	13
ACGTTTGCACTACAGC	ref_6061_new	57	83	54	50	109	49	69	51	98	51
TAGAAGCCAACGACCG	ref_6061_new	0	0	0	0	0	0	0	0	0	0
ATCGATCGTATAGGAC	ref_2412_negative	29	38	32	14	43	23	42	24	38	16
CTAGATTGTTAAATAT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CCGTAGATTTAACAGC	ref_2412_negative	5	16	9	7	16	10	22	14	13	10
TGCTCTACTCGCAAGT	ref_2412_negative	7	35	19	15	24	17	31	19	22	14
CGACATCGCTGTAGCG	ref_2412_negative	17	28	13	22	21	9	31	8	37	15
GGTTATAATCAACATG	ref_2412_negative	11	6	5	1	9	1	8	1	6	0
GGGCCATCAATGCCGT	ref_2412_negative	1	7	5	3	11	12	12	2	11	2
TGATTCTTACATGCTT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
GGCCTTTACGGCTTTA	ref_2412_negative	21	44	37	29	54	31	53	31	36	21
TTGGTCTGTCTTCTCA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TTCCAAACGCGATCTG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
AGCAGGGGGTCTAGCC	ref_2412_negative	11	12	20	5	12	19	14	12	12	17
CTCCGTCGTTCTAACG	ref_2412_negative	2	3	0	0	5	1	7	0	3	1
GTACTTGCATTTACAG	ref_2412_negative	17	24	12	13	33	12	26	20	23	5
CTCCAAGCAGCATATA	ref_2412_negative	0	6	2	0	11	0	11	0	7	0
AGGTACAATCCGTCCA	ref_2412_negative	14	11	5	13	18	6	16	9	18	6
CCCTTCGCGGTTTGCG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TCGCGTCAAAGTTCTC	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CAGTTATTCACTCGGC	ref_2412_negative	12	19	10	9	24	9	26	9	15	6
GTCCAACCCGCTTTCA	ref_2412_negative	7	9	4	2	18	6	8	6	10	4
TAAGTTACCACGGTTA	ref_2412_negative	3	5	4	2	3	2	5	0	2	5
GGCTGCGTTGAGGGCT	ref_2412_negative	16	32	17	15	31	14	35	25	31	19
TACACCCCTCCAGAAG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CTTGTGATATCTGCAT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TCCTCTGCACACGAAT	ref_2412_negative	8	14	10	12	22	9	11	12	27	9
TGGTACTCCACGAGTT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TAAATAGCTGGAGTCA	alt_2412_negative	45	92	54	42	83	46	100	47	85	34
GTTGACCGCGGTCGGT	ref_2412_negative	1	1	4	2	1	3	2	1	4	0
ATGAATTTCACAGCTG	ref_2412_negative	9	7	8	10	9	8	16	10	12	10
GCACATTACAGTATTC	ref_2412_negative	5	5	4	5	6	7	3	4	8	2
AATCTGGGGTTATCGC	ref_2412_negative	28	40	24	24	33	9	49	18	43	22
ACACACCAGGGTGTCT	ref_2412_negative	2	6	6	8	5	8	9	4	12	6
GAGTAGAGGTAATAGA	ref_2412_negative	32	56	23	19	43	21	40	29	54	21
CTGGATTGGGTTTCCG	alt_2412_negative	14	30	30	24	56	25	47	19	36	23
CACTCCACGGTCCAGC	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CGGAGTATTTATAATT	alt_2412_negative	52	109	82	59	91	53	103	59	112	58
GTTCCTGTCCGTAATT	ref_2412_negative	4	11	4	2	6	4	3	8	16	3
GATTACGACTCTTTTC	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CTCTACCAGTGATCAC	ref_2412_negative	11	31	29	14	41	10	38	17	26	26
GCAAAATATTGAAGTA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
GATCTTTCGGGGTTAG	ref_2412_negative	3	7	8	7	14	3	8	6	12	12
GATCTCCTACAGTGGC	ref_2412_negative	19	32	18	18	27	14	19	10	27	13
GGACGGTTTGTGCATG	ref_2412_negative	3	7	3	3	7	2	4	5	5	2
TTGCTCTGCTCTTTGA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
GGTAAAGGGCCGTGTA	ref_2412_negative	8	28	9	14	25	3	23	2	32	9
TGCTGTTTTCCAGTAT	ref_2412_negative	14	26	18	11	26	12	21	17	28	14
AGTCTTGGTTCCGATC	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
GAAAGCCTCGTCTACT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
AATCGTCCCTAGATTT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TTGTACAATATCGTTT	ref_2412_negative	4	7	2	5	10	8	6	1	3	4
AGTTGTTCGAATTTCC	ref_2412_negative	97	132	84	82	181	85	127	88	169	69
TAACGTAGTTGCAGTT	ref_2412_negative	31	61	45	49	71	27	49	32	60	39
GTCTTTTTACAGCGCT	ref_2412_negative	1	3	2	0	1	2	1	1	1	1
GCTCGTATTTATAGCA	ref_2412_negative	11	25	9	14	29	19	27	8	21	17
TCAGGCGACCACTGCA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TTATACTTCATACCAG	ref_2412_negative	0	1	0	1	0	0	0	1	0	0
CGGACAGCTGCACACA	ref_2412_negative	11	21	18	18	17	17	21	14	28	13
CCCGCCTTTGACAAAC	ref_2412_negative	0	5	1	1	3	1	4	1	5	1
CAAACGTCCGCTAGTC	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
ATTTTCGGGCTTCCGA	ref_2412_negative	7	3	3	7	3	5	4	3	3	2
CTTTAGGGGGGTCGCG	alt_2412_negative	13	27	15	22	30	14	24	13	31	9
GCTTGATGCGGTCATA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
ACTATATGAACTACGG	ref_2412_negative	18	26	13	19	31	12	34	15	32	9
AAAGGCGCACCTGGTA	ref_2412_negative	2	1	0	4	6	7	6	5	4	4
CAAGTATTCTTCCTGT	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GGAAATAGTTAAAAGC	ref_2412_negative	17	24	11	18	21	12	18	10	18	17
CTCATTCCCCTCTCAA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
GGTTGTTCCGGCCTTC	ref_2412_negative	9	8	4	6	11	9	12	4	14	7
CCAGCCCAACACCAAT	ref_2412_negative	10	33	0	3	41	1	40	2	35	2
AATTGTGCGGAGGGCT	ref_2412_negative	44	60	41	26	80	43	60	34	81	23
TGTTCAGACTCGCACC	ref_2412_negative	19	52	13	15	50	17	45	24	51	15
TTAACGGCTTTCACTT	ref_2412_negative	5	5	4	2	4	5	5	6	6	3
TGACACTTCATGTCCA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
ACTTATGATTAAGTCA	ref_2412_negative	15	33	25	23	42	10	36	17	48	17
CCTCATCCAGACTGTG	ref_2412_negative	5	13	6	9	4	3	12	5	13	4
AAGTATACAGGAACGT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CCTGCGATTCTCGATT	ref_2412_negative	12	35	12	9	26	8	21	7	24	4
GGTTTCTCGTGAGCCC	ref_2412_negative	15	46	24	15	51	13	26	16	28	8
AGTTAACTCCGTTATG	ref_2412_negative	7	2	3	5	3	3	6	6	6	4
CTGCAATGCTGTAAAT	ref_2412_negative	3	3	0	4	7	3	4	4	2	10
TACAGATACTTGGTTC	ref_2412_negative	13	32	11	14	21	14	23	11	18	14
GTTTCTACTCTCTGAT	ref_2412_negative	55	128	58	56	123	41	127	47	110	40
CTTTGCGATGCAAACA	ref_2412_negative	2	11	6	5	7	6	7	6	7	4
TTCGGTCTCTCCACAA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CTTCACTGTGGTAGTG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TGTCTTAATTCCCGTG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
GACTCTGTGGTCGCTT	ref_2412_negative	5	13	16	9	11	5	11	7	13	4
TGTAACGTCGATGAGG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TGAGTGTTATGTTTAG	ref_2412_negative	3	13	1	4	6	3	6	3	5	4
CTACAGTTTTGCATCA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TCACCCTAGTGCATTG	ref_2412_negative	7	38	10	12	36	11	39	9	39	7
TGGTTTTCGACTGAGA	ref_2412_negative	2	10	2	2	14	2	12	8	9	1
TGCTCGGCCTTACACG	ref_2412_negative	5	13	4	9	17	11	11	8	15	12
TCCTTGGAGCCGCGAT	ref_2412_negative	4	11	6	6	11	5	23	8	13	6
TCGTCCGCACCCGTGT	ref_2412_negative	2	17	5	9	13	3	14	8	19	7
ATACTCGAAGCTTTAT	ref_2412_negative	43	15	59	47	22	38	18	38	27	35
CCCATTGACATGTTGG	ref_2412_negative	2	1	1	1	2	0	2	2	5	0
TCTATAGGTCGGCGGC	ref_2412_negative	0	33	10	7	19	4	28	3	25	9
ATAGGTGGGATTTAAT	ref_2412_negative	29	38	31	35	33	17	63	29	42	18
TTAGTGTTTACTCGAT	ref_2412_negative	0	4	5	0	3	0	2	1	2	1
CGAAAGTGATTACATG	ref_2412_negative	17	23	22	24	35	27	44	12	53	25
ATATATGATCTCGTGG	ref_2412_negative	15	18	4	13	15	9	26	6	13	6
CAGGTATGTAGGGTGT	ref_2412_negative	2	8	1	2	12	1	8	1	8	0
CATTCCTCTGACGGCT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CGAAGTTTTTCAGTCG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
CGATGAGCGACATAGG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TATGAAACCCGCGACT	ref_2412_negative	15	36	22	25	56	18	54	8	43	12
TTACAACACGCCCCAC	ref_2412_negative	0	2	1	7	4	0	1	3	3	4
GCTTTTCTCGCTGGGT	ref_2412_negative	6	8	10	9	11	10	11	6	14	4
GGTAATCAACTTCCTT	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
ATACATAAGCGTTTTG	ref_2412_negative	20	53	18	23	51	27	67	24	56	19
AGGAAGCGAAGGTGCG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
AGGGGCTGATCTGATG	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TACACCGATCATTGTT	ref_2412_negative	6	44	14	12	49	16	48	9	53	12
TATTTAAAAGGGTACT	ref_2412_negative	16	51	31	10	37	19	48	22	70	17
GCATGCCAGTTTAAAC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TAGTGTAGCTGTGGTA	ref_2412_negative	0	0	0	0	0	0	0	0	0	0
TAACTGTAAGTTTAAT	ref_2618_RC	86	50	137	104	49	79	51	77	45	75
GCAGTAGAGGTGGGTG	ref_2618_RC	16	15	13	26	11	27	8	6	14	15
TTATCATTGCTTTCAA	ref_2618_RC	78	70	109	89	65	98	55	85	61	84
TCTAGCACCTCTCTGT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CCTGGCCAACTAGATT	ref_2618_RC	65	33	61	52	50	59	51	55	33	49
AGGATTTTTGCTCATG	ref_2618_RC	62	32	51	39	14	42	29	22	27	44
GTGCTTTGTCATGCAT	ref_2618_RC	2	1	10	2	2	2	5	3	4	6
AACTCTACGTCAATGT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TTTGGCGTTCATCCCC	ref_2618_RC	247	181	296	255	150	248	173	236	199	235
ATGAGTATTTCTATTA	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TCTTAGATCTAAACTA	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TTGCTACTCCCACGGT	ref_2618_RC	78	79	100	85	96	122	90	90	62	82
GGGGTCGGCGCAGAAT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
AAGAAATTGCTTCCTT	ref_2618_RC	86	46	107	84	57	61	52	78	34	72
TCTGCTTGCGACCCCG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CAGTTCGCATGTTTAG	ref_2618_RC	31	12	38	21	18	20	18	28	10	24
GATTAGGCAGTACCTG	ref_2618_RC	240	170	292	230	175	252	187	263	178	223
GCTTAGTGAGTCCGCG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
AGACCTCGTCTAATCC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CTCAGCACAGCGTCTT	ref_2618_RC	4	4	9	7	3	3	8	3	4	4
ACAACATTTTATCGCC	ref_2618_RC	128	83	131	144	73	109	79	126	84	78
GATCGTTATCCCAGTT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GGCTCACCGGCTGTAT	ref_2618_RC	234	190	344	312	210	256	225	252	228	237
CCGTTCTAAGTGGCCG	ref_2618_RC	9	13	1	2	15	2	17	7	6	1
AACTTTGTGTTAGCCG	ref_2618_RC	24	26	28	31	26	19	23	19	22	15
GGTAATACTCGTGTTG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTTCGTTTCTCT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CATATTAAATTAATCA	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GCCCCTCTTTCGGTCG	ref_2618_RC	16	20	11	18	10	12	10	16	9	15
GAATCTTTTCTTGCCG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GGTTGCCATATATGCC	ref_2618_RC	60	48	97	67	36	71	37	65	44	61
CTTCTTTAAACCCGTC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCTCGTTAGCGT	ref_2618_RC	20	16	28	31	15	31	24	26	14	32
CGCAAGGTTGTTTTCT	ref_2618_RC	26	13	30	20	13	23	9	27	22	29
ATCAGATAAAAGTGCC	ref_2618_RC	542	224	606	487	222	445	198	453	234	444
ATAGTGCCGACGGGTT	ref_2618_RC	159	34	177	94	40	137	30	127	31	142
GGGGCCGTTGATCCTA	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GGCTCTATCCGGGGCG	ref_2618_RC	29	21	45	28	19	19	18	27	28	21
ACCTTCCGCTGTTTGC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
AGGTCGACTATCGTTG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
ATATTCTCTTGCCGGA	ref_2618_RC	202	111	258	198	120	185	113	194	135	203
ATAGCCAGTGTATCAT	ref_2618_RC	61	42	65	53	41	58	57	58	49	45
CGGGTCGGCAAAGCAT	ref_2618_RC	40	16	32	30	14	20	23	32	21	23
TTTATTTGGCCGCGGG	ref_2618_RC	93	45	114	88	51	82	52	75	38	73
TAACGACCCACTTCGG	ref_2618_RC	63	31	67	65	28	49	27	55	29	58
CCAACTACACTTTATG	ref_2618_RC	111	95	103	105	107	112	94	95	119	85
GAGAGGTGGCTTGTAA	ref_2618_RC	28	13	43	35	13	34	19	34	13	16
AGGTCGACTAGTCGGT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
ATCAAGTCACGCGGCA	ref_2618_RC	54	23	55	38	27	36	33	35	24	42
TTCGCAGAGCATCAGT	ref_2618_RC	148	91	177	166	73	166	93	120	110	160
AGGACAACTTTTTTTT	ref_2618_RC	41	32	61	35	31	49	24	38	23	42
ATTTGGGTAGTAACGC	ref_2618_RC	41	20	36	37	21	36	31	26	19	39
TTTATCAGCTAATAGC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CCATCCTATTTTCGAA	ref_2618_RC	28	89	30	25	79	31	84	28	84	27
CACTCATTGTGTTTAT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TCCGGCAAAGTATTCG	ref_2618_RC	30	16	55	35	17	32	23	24	23	40
TTAGATACCACCCCGG	ref_2618_RC	5	4	14	20	7	18	9	4	8	10
TGATGTGTTTTGGTAC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CCAGTGCTCTTTTTTC	ref_2618_RC	75	69	92	91	76	52	80	60	61	78
AGCTCTATGCGTCATG	ref_2618_RC	4	3	13	9	3	10	5	12	7	4
GATAGGGCCTACTTCC	ref_2618_RC	82	48	71	72	31	54	37	47	52	68
CGCCAAAGCTTCACAC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
ATGGTCTGCGTAACTT	ref_2618_RC	50	30	64	56	16	53	25	32	26	35
AAGAGCGTTTCTCTAT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GACACGAACATTCCTT	ref_2618_RC	8	7	10	9	5	7	2	10	11	9
CCAATGCGTGTCGACA	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TTTATAAAGATGTATT	ref_2618_RC	71	56	97	75	53	74	45	75	39	66
TTATGCATACAAACGG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TGATGTAATGTTTCAA	ref_2618_RC	111	71	140	131	67	111	70	110	75	101
TGGTACCAGGAGGTAG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TTCGCTCTCCGTCAGA	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TATGCCAAGATGTGTG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TGAGACATGAACGTTT	ref_2618_RC	59	41	82	63	41	57	46	60	45	66
GCGACGCCCTATCTGT	ref_2618_RC	63	34	55	53	29	56	29	62	47	57
TATCTTTGAGTTATTT	ref_2618_RC	16	11	15	12	8	20	3	10	3	9
TAATCAATCGCCGCGG	ref_2618_RC	309	131	330	313	155	297	146	275	147	273
GGCCCCGATCTAATTA	ref_2618_RC	29	14	38	41	23	24	16	28	15	42
GTAAGTTGTTTTTCTT	ref_2618_RC	26	23	34	33	14	31	24	38	20	28
TTGGTGGTGTGACGTG	ref_2618_RC	482	310	543	496	290	474	308	457	313	477
GTTAATCTGCCAGGGT	ref_2618_RC	38	20	44	36	19	25	21	27	22	28
CACGGCTAGTATAGCC	ref_2618_RC	13	9	7	18	8	15	12	8	6	11
ATGTTATTCGCTATTG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GTTAAAAGATACGTTC	ref_2618_RC	122	70	177	136	68	108	61	138	79	144
ATGTTTGATAGGGTGG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GGCGCGGAGGCTCGCG	ref_2618_RC	4	5	4	9	3	4	5	3	7	6
GCTTGTCTTCGCTCAG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
ATAGGACCCTTGGTGA	ref_2618_RC	36	15	42	33	24	40	18	45	21	28
CTAAGAACTACATCGG	ref_2618_RC	50	37	62	42	30	39	36	32	27	39
AATATTTTATTTGCCG	ref_2618_RC	100	68	131	114	74	106	60	113	59	100
TGCAGTTTACGGGCCA	ref_2618_RC	64	33	65	41	29	38	36	62	27	43
CCATTGGCTAAGCTTC	ref_2618_RC	22	24	17	19	12	20	25	17	26	23
TGGTCTCACCCCCTCC	ref_2618_RC	71	36	79	70	22	65	21	48	41	57
GTAATCTGTAGGGTGG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
ATAATTACGTGCATCA	ref_2618_RC	17	9	18	8	13	19	5	17	10	16
CATCACCGAATTTATG	ref_2618_RC	68	39	62	69	44	54	43	58	45	47
AGTGGTAGCTTTTAAG	ref_2618_RC	4	2	8	5	2	5	4	7	1	1
ACCTCAGAGGTAGATT	ref_2618_RC	22	9	13	9	10	13	10	20	14	10
GACTGGCTGAATTGCG	ref_2618_RC	27	14	38	43	16	30	21	21	19	23
CCGCGCCCTCGCCTCT	ref_2618_RC	126	69	156	154	75	123	86	110	82	133
CTACCCCAGCAACACT	ref_2618_RC	8	16	17	22	8	17	6	15	13	9
CTTGGGACAGTCACCG	ref_2618_RC	48	25	37	47	21	50	20	44	16	41
CGACTGTTATGTGTGC	ref_2618_RC	26	19	40	22	10	24	13	25	17	25
CATAAGGCGGGTCCGT	ref_2618_RC	49	28	67	44	25	41	33	50	27	43
ATGACTCTTACGGTCC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TCATAGTCGGTAGTCA	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TGTGGTCGTGAGATAC	ref_2618_RC	37	23	51	36	27	55	29	35	26	27
AAATACTGGTAAGACA	ref_2618_RC	26	21	36	32	20	30	17	35	13	34
CGGTGTCAAGTTTGCT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
GCCACGCTCGGGTTTA	ref_2618_RC	133	88	193	167	92	160	111	137	105	156
TTTTATTCCTTAAAGA	ref_2618_RC	121	60	141	132	77	111	52	96	60	120
CGTCTCCGCGGTTACC	ref_2618_RC	192	125	249	201	143	193	148	196	174	164
GTCAAGTTGTTTCATT	ref_2618_RC	12	3	9	8	3	7	1	4	2	6
TAAAACCGCGAGATTC	ref_2618_RC	70	52	108	91	57	104	56	87	53	85
GCCTCATGGATACCTG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TTTGTCAATAAAACTG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TTTCGCCAGGTTACCT	ref_2618_RC	49	37	47	60	20	60	34	54	35	44
TCTTAATCTGTATCGG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
AGTATACCCCCCCACA	ref_2618_RC	37	36	48	48	54	43	32	43	33	44
TGGACCTTAGGAACTC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCATGGCCGCCG	ref_2618_RC	104	47	142	125	39	112	48	114	54	65
AGATTGGGAGAATAGT	ref_2618_RC	45	14	38	33	8	46	19	30	20	35
GAGCGAAAATGTAACG	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
TGGTGCGGTTTTCGTT	ref_2618_RC	31	24	31	26	12	25	15	22	19	25
AGGCTTCATGCTACGT	ref_2618_RC	95	75	132	122	85	79	74	80	69	85
CCACTTCGTTCAATTC	ref_2618_RC	56	59	71	76	56	78	48	60	59	51
GAGGTTGGGTCTGCAC	ref_2618_RC	87	51	111	86	56	79	46	89	52	101
GTCTACGTATGCCTAG	ref_2618_RC	14	4	13	15	4	11	5	16	6	6
AGACGCCGGTTGTGAA	ref_2618_RC	151	68	160	176	90	129	96	114	75	138
GACTTCGCACATCAGA	ref_2618_RC	39	18	40	34	13	33	21	31	27	31
GTCTTTTACTGGAGGT	ref_2618_RC	101	55	107	88	69	81	59	96	51	85
GAGGTACTTGGATTTC	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
AGTTCGGATTTCGGGC	ref_2618_RC	19	9	17	12	11	13	4	12	3	20
TCATTTCACAGTAATT	ref_2618_RC	0	0	0	0	0	0	0	0	0	0
CGTATCTGTTTGTACG	ref_2618_RC	53	47	88	69	36	70	38	70	46	54
AGGTTGAAGCGTTTTA	ref_671_upstream	35	8	64	43	21	44	28	41	22	39
GGTCAACTTATAGCGT	ref_671_upstream	161	74	231	192	91	161	86	180	86	171
CAAACAGGCCAGGGAT	ref_671_upstream	436	162	492	413	205	386	185	404	222	379
CTCTCGCTGAATTTGC	ref_671_upstream	25	8	20	22	7	19	9	23	12	24
AATCCACTCTAGGCTC	alt_671_upstream	93	31	88	64	40	72	35	60	34	74
TGTTGTGCTACTCTGA	ref_671_upstream	64	36	89	85	24	83	31	74	33	51
ACTGCCTTGGATAAAT	ref_671_upstream	120	36	112	118	56	105	52	89	55	128
CTCGGTCCGACTTTTT	ref_671_upstream	63	39	72	71	32	61	34	62	37	65
AGTTGTGTCTTTGGCA	ref_671_upstream	3	0	9	7	1	4	3	6	5	4
AAAACCGGGTACCTCG	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCATAGCTGAGG	ref_671_upstream	76	35	116	99	49	87	41	89	35	107
TCTCTTTAATCGAGCC	ref_671_upstream	183	72	224	171	82	184	79	149	86	155
GGAGACGTGTTAGGTC	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GGTAATAACTTGTCTA	ref_671_upstream	46	16	56	39	23	32	12	41	27	42
CCCATCGTCTAAGATC	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
ACGTAGATAACAGACA	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
CAGATCGTTCCTGTTT	ref_671_upstream	23	25	32	36	19	32	32	34	17	31
ATGTCCCGTGGTTAAT	ref_671_upstream	38	21	38	40	14	30	13	28	9	33
TGATTGAAGATGTCCA	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TTATAGAGAAACGTGT	ref_671_upstream	48	27	45	48	20	35	14	44	17	29
CCCGGTATACAGCGGC	ref_671_upstream	4	18	8	1	8	12	8	2	11	2
GCTGAGACCTGTGATA	ref_671_upstream	82	35	59	72	35	80	37	64	51	66
TCTTACTATTATAGCT	ref_671_upstream	2	0	3	1	1	0	1	1	0	3
CTGGCTATTCCCATAG	ref_671_upstream	19	20	43	39	17	37	19	28	15	19
GGACTGCCCCGTTTCT	ref_671_upstream	198	106	223	203	106	153	123	205	127	191
GAAGGCCTCTACACCC	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
CGGGACCCAAGTAGAG	ref_671_upstream	56	18	52	39	23	51	17	34	16	45
AAACACTTGAATAGTC	ref_671_upstream	119	58	167	145	73	133	56	122	68	136
GTGTACTGTATAAATG	ref_671_upstream	98	26	128	101	60	79	46	76	41	65
GGTTCATCTAGACAGT	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GATCCCGGATTTCTAG	ref_671_upstream	45	22	27	39	24	46	16	32	15	23
TCTCGATGTTAATGGC	ref_671_upstream	67	20	87	56	24	61	30	58	32	69
TAGGAGCTCTTGTAGG	ref_671_upstream	48	15	56	41	12	37	20	28	14	29
TTCTTGTCTCCGGTAA	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
CACGGTCGTTTACGTA	ref_671_upstream	28	13	44	22	8	28	20	32	8	29
TGTTAGTTGCCCTCGT	ref_671_upstream	77	47	62	62	43	74	45	67	33	82
AGTTCGTAGACGCCAT	alt_671_upstream	661	192	779	644	220	658	216	614	250	607
GCCCTTATACAAGCTG	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGCCGGTAAGCTG	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATAGCAAGTAAC	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TTCATAGCTTGAGCGA	ref_671_upstream	78	45	75	65	37	63	15	83	23	69
AAGCAGATTTAGGTTA	ref_671_upstream	163	61	199	155	67	147	62	134	65	130
TTATTACACCGAAGGC	ref_671_upstream	109	56	110	97	36	119	34	89	62	95
TTCTAAGCATTGTGGT	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTGGAACACCATC	ref_671_upstream	106	41	137	126	51	95	79	108	51	100
AGACCGCTTCCTAATG	ref_671_upstream	10	8	13	8	13	4	12	10	11	9
CGTAGATCATTGGTTT	ref_671_upstream	42	23	59	43	2	36	25	34	26	35
TTTCCAGGCTTCGTGG	ref_671_upstream	52	35	58	49	41	60	24	52	31	48
TAGCGCTCTGGGGAAT	ref_671_upstream	115	82	149	108	90	81	101	107	90	117
CTTGGTAGATCATATG	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TATTATTTTTTGCTTC	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GACCAGCTGGGCTTTC	ref_671_upstream	41	25	61	37	28	37	38	51	31	34
TGTATATGCCACCATT	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TCGATAAGACTATCTT	ref_671_upstream	219	124	297	235	101	207	117	225	110	216
ATTTCGAGACGCTGTA	ref_671_upstream	9	8	24	13	10	10	4	22	4	11
GAGAATCTATGATAGG	alt_671_upstream	9	4	14	17	2	7	4	15	1	7
TTCATCGCAGCGGATG	ref_671_upstream	53	28	61	51	36	56	37	55	31	49
GACCCCGTAATTGGTG	ref_671_upstream	187	71	228	176	94	170	106	160	86	175
CATGTTCCCTTAGTCA	ref_671_upstream	71	29	82	74	35	60	27	54	37	48
CTGCTATATCTTATGT	ref_671_upstream	350	159	483	314	164	289	173	335	180	319
TGACGCCCCATATTGT	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TGAACTTTATTCATAA	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
CCACCACGAAACGCCT	ref_671_upstream	27	9	26	22	18	23	14	16	15	24
TATCCGCGCGTAAGGT	ref_671_upstream	111	59	119	105	63	97	69	86	47	119
CACGTTTTCACAAACT	ref_671_upstream	23	16	41	19	8	38	11	30	16	19
TCGCTAGGCTCTGGCT	ref_671_upstream	44	22	58	31	18	41	22	38	15	23
GAGGAACTTTGCCTGT	ref_671_upstream	209	96	268	185	81	198	125	177	112	189
GTCTGTCTTTATAAGT	alt_671_upstream	98	39	115	89	42	107	46	100	37	82
GTCCGCTCTTTGTGTC	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
ATATGCGATACGTCCG	ref_671_upstream	92	62	109	112	60	101	50	101	63	88
TCTACCTAATACATTC	ref_671_upstream	3	0	1	6	0	1	4	3	1	2
CTGCAGGTCGTGGTTA	ref_671_upstream	18	7	51	23	9	22	13	30	17	29
ACCTGGTAGCTCTTGT	ref_671_upstream	39	25	30	35	11	32	33	21	13	22
AATTAACGGGTTGGTT	ref_671_upstream	15	2	20	18	8	17	4	12	8	17
CTTTTTCTCTTAATCC	ref_671_upstream	181	68	199	172	76	168	79	156	94	161
GTCCATTCAGACAAAT	ref_671_upstream	464	206	486	437	213	379	231	441	213	405
ACTGCGCACCGCGCCG	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTACCAATTCTGG	alt_671_upstream	111	65	114	97	55	102	69	99	55	114
TAATAGCTCACTCCCT	ref_671_upstream	2	23	9	5	38	6	29	12	46	3
TTTCTGTAGTGTCAGT	ref_671_upstream	87	44	94	95	33	55	37	81	40	81
GGGACAGGCCTTGATC	ref_671_upstream	72	46	80	93	29	83	48	76	49	74
TCGTATCATGGTCATT	ref_671_upstream	191	90	232	167	91	163	89	151	98	161
CTCCTGAATCATCAAC	ref_671_upstream	47	22	55	48	33	37	23	35	20	66
TTTTAGGCTTCCGTAC	ref_671_upstream	84	29	82	69	37	63	42	68	37	69
TGTGTTCTGGGAGTTT	ref_671_upstream	16	3	15	16	7	15	7	13	4	9
CTAGTAGCTTTAACTA	ref_671_upstream	39	16	50	43	21	40	19	49	19	56
TGCATCCTTTAGTTTC	ref_671_upstream	320	147	338	315	158	301	140	302	154	255
ACCCTATTCCGTAAGT	ref_671_upstream	24	10	34	30	9	35	22	20	19	21
TAACGTTACTCTCCTT	ref_671_upstream	143	80	159	160	68	132	75	139	71	123
GTCCTGTAACATTAGC	ref_671_upstream	10	6	10	10	5	8	3	10	5	4
GTGGCACCATCTTGGG	ref_671_upstream	410	212	408	353	180	360	186	381	202	349
AAATTTTGATTATGTA	ref_671_upstream	73	21	74	59	32	54	25	60	22	43
GTTTAAGCTTTTACTC	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
AATCCCTTTCACCGCT	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
CGAGACGTTCCCATAG	ref_671_upstream	25	15	26	22	20	21	11	29	13	20
ATGGGCCCTGAAGCCC	ref_671_upstream	9	10	9	5	0	8	4	11	6	4
CAATCTTAGCACGTAC	ref_671_upstream	19	32	19	17	31	19	27	25	29	19
CGGAAGTAAGAAACTA	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCGTTATCTATCC	ref_671_upstream	80	37	78	61	43	66	30	59	35	62
CATCGACTTTAGCCCG	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GCTAAGACCTGTGATA	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTAGATGAGCCCG	ref_671_upstream	194	70	246	234	94	175	94	180	121	173
CAATTTTTATTTCTAT	ref_671_upstream	28	5	20	20	11	26	12	22	2	29
ACTCGTCCTCAGCTCT	ref_671_upstream	12	2	4	5	2	11	6	6	2	4
GGGACATCCTTGTTCA	ref_671_upstream	102	40	126	87	38	117	52	109	53	83
CCCCGTCTTCCCATTC	ref_671_upstream	9	9	25	20	13	13	17	16	12	11
CCTAGGAGCCAGCGCG	ref_671_upstream	262	125	331	280	118	265	133	260	128	235
CTGGCCTCTTGGGTTA	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGATTTTGTATG	alt_671_upstream	151	72	210	158	92	160	83	155	72	139
CTAATCGCCTTATCTG	ref_671_upstream	35	14	62	38	16	32	29	28	26	30
CATGACATCGACTTTA	ref_671_upstream	58	22	51	47	23	52	30	47	22	47
TGGATCTGCCACAGTG	alt_671_upstream	11	17	19	13	21	19	12	5	19	10
TATCAAATCACGCCTG	ref_671_upstream	36	19	54	62	31	46	24	45	26	49
TCCAGTATGCGCGCCC	ref_671_upstream	8	3	13	4	3	12	3	7	0	3
CGTTTGTACCACTCTT	ref_671_upstream	13	14	19	14	14	15	14	17	9	14
TGGCAGTCAACTAGGT	alt_671_upstream	137	105	130	98	134	121	103	128	138	116
GAAAATCCGGCCCGGG	ref_671_upstream	198	63	208	203	92	186	89	161	72	172
ACTACAACATTGGGCA	ref_671_upstream	24	15	22	20	9	18	9	13	14	18
CCTGTCACGCCCGTCA	ref_671_upstream	193	65	239	198	94	154	97	185	101	188
TCATACAACGAAGGGC	alt_671_upstream	52	58	80	44	66	62	54	40	70	50
CTGCCCAGTCTCGGCG	ref_671_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAAGTTCGTGCGT	ref_671_upstream	18	10	25	17	17	21	12	23	8	17
TATGCTCCTTACTTAA	ref_6029_new	142	225	140	144	216	115	232	105	234	121
CATTGGGACTCTTAGC	ref_6029_new	8	10	9	6	19	7	16	4	10	7
TTTACTTAAGGCGGGA	ref_6029_new	21	32	25	34	29	30	36	25	27	18
TTTCACGCCTGGTCGC	ref_6029_new	0	0	0	0	0	0	0	0	0	0
ATCACGGCAGGGTCTC	ref_6029_new	20	29	18	24	21	13	21	7	33	22
TGCTTCAGGATAAGTA	ref_6029_new	4	11	5	3	11	6	16	2	6	2
AGCTAACCCTTTCCTT	ref_6029_new	4	12	7	12	12	9	16	9	13	7
GGCTCTGGGCGCTAAA	ref_6029_new	0	0	0	0	0	0	0	0	0	0
ACGATGTACAAATCGA	ref_6029_new	14	22	19	13	28	11	30	14	28	13
GGATGGAGTGAGAATT	ref_6029_new	4	15	5	4	10	1	7	0	4	3
AAGTCCAGATTGCTCT	ref_6029_new	10	11	14	9	17	7	10	9	9	2
TCTACAGTAAGTCTCC	ref_6029_new	72	154	109	96	119	81	134	63	141	73
CGAGAGGAGTTATTAT	ref_6029_new	0	0	0	0	0	0	0	0	0	0
TGATTTGGGTTATTGC	ref_6029_new	29	33	29	14	34	19	39	21	40	23
AATGGATATGTGTCTT	ref_6029_new	30	31	33	21	45	11	38	14	28	11
AACTTTATCTGTGCTG	ref_6029_new	0	0	0	0	0	0	0	0	0	0
GACTAATGGCCCATGC	ref_6029_new	8	18	9	4	13	4	15	15	11	9
GATCGGTGCTCAAGAC	ref_6029_new	0	0	0	0	0	0	0	0	0	0
ACGAATCGGGCGCTCA	ref_6029_new	11	21	25	12	23	13	20	9	29	16
AAGGACAGTCATGACC	alt_6029_new	23	37	20	15	36	19	32	17	32	24
TGTTAAACAGGCCTCA	ref_6029_new	120	166	121	130	176	95	205	112	191	101
GCCCAATTCAGTGTGA	alt_6029_new	131	238	143	108	229	126	238	142	256	127
TGCCCCTGGCCTCTAA	ref_6029_new	60	112	96	84	118	76	127	59	135	59
TCCGTGTCTATAACCG	ref_6029_new	2	10	1	0	5	1	5	1	13	3
AAGTTGTCCATTCTAT	ref_6029_new	1	3	1	1	2	0	2	0	2	1
TTGATGTGCTAGCTTG	ref_6029_new	6	18	8	8	12	8	21	4	14	8
ATGAAACAGAGATTCT	ref_6029_new	0	0	0	0	0	0	0	0	0	0
CATGATGTAGCTCTAT	ref_6029_new	38	66	50	45	54	39	66	38	70	40
TGTCTATATGTTTCTC	ref_6029_new	56	65	57	54	68	33	66	37	57	52
CCCCGTCCTATTTTTA	ref_6029_new	19	39	13	17	48	14	36	7	45	23
CTTGCGCGCCGTGCGG	ref_6029_new	0	0	0	0	0	0	0	0	0	0
GCGAAGGGCACCAGTT	ref_6029_new	0	0	0	0	0	0	0	0	0	0
AACTTGGGTACTGTAA	ref_6029_new	0	0	0	0	0	0	0	0	0	0
GTGATCGTTAAAATCG	ref_6029_new	10	19	3	3	11	4	5	3	6	8
CCGTCCGTAGCCCCTT	ref_6029_new	0	0	0	0	0	0	0	0	0	0
TATGCTGCTTAAGCCA	ref_6029_new	0	0	0	0	0	0	0	0	0	0
GACACCTCACTAGCGT	ref_6029_new	0	0	0	0	0	0	0	0	0	0
CATTTCTTCCCCGTGC	ref_6029_new	6	16	10	10	24	2	17	8	27	9
TACGACGCTATTTAAA	ref_6029_new	10	17	8	3	22	6	19	2	10	6
TCTTTGCACCGTATCC	ref_6029_new	24	48	29	27	34	32	41	27	49	30
TTCAACGCCTAGTATC	ref_6029_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTTCTATTGGA	ref_6029_new	0	0	0	0	0	0	0	0	0	0
ACCGCGAAGTTTTATT	ref_6029_new	72	232	117	83	257	73	241	90	253	84
TCGCTTTACAATCTGG	ref_6029_new	0	0	0	0	0	0	0	0	0	0
TTACGCATATTGCGTG	ref_6029_new	16	32	18	19	38	11	36	16	37	18
GTTAGTAGCGCGTAGC	alt_6029_new	11	16	16	10	24	8	17	10	31	13
CCTATGCAGTGCAGTT	ref_6029_new	5	4	6	5	10	4	4	2	8	0
CTAATTGTAGACCGGC	ref_6029_new	3	5	5	2	4	6	5	5	11	1
AACTAGGTACCGAGTC	ref_6029_new	0	0	0	0	0	0	0	0	0	0
GTTTCCCCATTTCTAC	ref_6029_new	0	0	0	0	0	0	0	0	0	0
CTGCCATTTGTCCTTC	ref_6029_new	5	9	11	3	9	6	18	7	13	3
CCAAGACTTTCTCTGT	ref_6029_new	0	0	0	0	0	0	0	0	0	0
TCCAGTCGCCATTCGC	ref_6029_new	3	12	9	9	12	3	13	1	10	8
CGGTTTGCCCTTCCTC	ref_6029_new	0	0	0	0	0	0	0	0	0	0
TCTTTGGACCGTCTTG	ref_6029_new	7	12	3	1	6	4	6	4	13	10
AGATCCACGTTTATAT	ref_6029_new	14	29	17	12	24	14	30	18	22	19
GTCTAAGTCGCACGTG	ref_6029_new	4	8	3	2	9	6	7	4	9	0
CAGAAGGGGAGATGGA	ref_6029_new	0	0	0	0	0	0	0	0	0	0
CAGGATTCACCTTCGT	ref_6029_new	0	0	0	0	0	0	0	0	0	0
ATCTGAAGGTGCGTTC	ref_6029_new	9	14	5	3	11	4	12	4	6	7
TCTATCTATAAGACTC	ref_6029_new	10	28	13	14	12	9	21	16	17	9
CGTTCGCGCCGGTTTA	ref_6029_new	17	52	30	19	66	30	43	20	55	19
CGGGTATAATCTTTAG	ref_6029_new	47	100	41	30	59	50	68	43	76	35
ATCTCCGCTACCCGAG	ref_6029_new	5	5	6	1	4	3	5	4	6	2
GCGGACGCATTCCCAT	alt_3262_RC	234	226	343	239	233	242	243	237	295	210
TGCCTATTCTAATCGC	ref_3262_RC	15	9	7	10	9	6	9	7	5	5
TCGGTCGTTTGGGACC	ref_3262_RC	3	11	8	7	27	6	15	6	21	3
ACTGTTCCTAGCTGTC	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
CATGTGGCTCGTTATC	ref_3262_RC	37	36	47	23	33	42	44	26	48	29
GGCCATAACTGGATTT	ref_3262_RC	57	59	69	37	55	69	70	64	75	55
GTGGTACTATCTCTGG	ref_3262_RC	12	21	8	6	30	7	12	7	20	16
GAGCACCAGTAAGGAA	ref_3262_RC	17	27	33	20	26	20	32	29	30	24
TGCTATTTTTTATTCC	ref_3262_RC	15	18	14	16	21	21	22	11	15	18
GTGTGGCTTTCTTACT	ref_3262_RC	12	11	15	13	19	11	11	17	13	11
AGTAAATAGAGTATGT	ref_3262_RC	103	121	106	107	89	129	136	99	150	72
TCATAAGGTGGGTTAT	ref_3262_RC	57	50	68	60	53	36	66	44	54	37
GTTTAATTGAGGGAAC	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
CAGCCGTGCGCCCTTA	ref_3262_RC	1	19	2	3	21	5	27	3	27	3
GTTTATGAGGAAGTAT	ref_3262_RC	8	7	9	18	18	9	9	15	26	6
CGGTATGCTTTCTACC	ref_3262_RC	42	46	37	35	69	53	55	45	67	40
GTCGTAATGAGAATTG	ref_3262_RC	115	120	115	69	78	104	95	79	121	83
GTAGCCGGACTCACGT	ref_3262_RC	42	58	65	46	65	47	93	48	69	54
CTAGCTAAGGATTTTT	ref_3262_RC	2	4	2	3	3	2	4	2	5	3
ATTGGTATCTATCTCG	ref_3262_RC	2	15	16	9	11	11	13	7	9	14
AGTATGTTACGGTCGT	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
ATAGACTCGCGATATA	ref_3262_RC	22	19	27	29	23	39	34	25	38	12
GCATTTACGTCTATAA	ref_3262_RC	16	16	19	19	24	23	28	24	37	13
TTAACCTTCCTCCAGC	ref_3262_RC	103	82	94	85	102	78	109	69	124	78
TCAGCTCACGTCGGAA	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
CAATGTGACTAGTAAG	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
TATGGGTTATCAGTTC	ref_3262_RC	106	121	125	120	104	92	133	90	130	69
GTCGTGCGCGCAGGCA	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
TTTATGCTACACTGAC	ref_3262_RC	21	25	11	19	14	9	15	11	40	7
AGGGTCTGCGCGCGCG	ref_3262_RC	213	317	285	228	318	248	298	206	353	181
TGGCGTTGTTGAGTGT	ref_3262_RC	37	60	51	54	50	34	40	49	49	39
GCTTCAGATCGTACCT	ref_3262_RC	33	32	38	28	40	30	59	39	53	31
TTGTGTTTAGTGAACT	ref_3262_RC	6	18	19	17	19	15	16	16	15	13
CCTCCCTACCTGACAT	alt_3262_RC	69	184	101	92	148	59	160	96	160	65
AACTCGCGATGTCCAC	ref_3262_RC	30	35	31	21	25	19	37	23	39	21
TTGTGTAGTCGCTTCG	ref_3262_RC	7	2	0	7	5	11	7	2	9	6
CCGTAGAGTGGCTACG	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
TTTCGAAATCTCCCGG	ref_3262_RC	33	42	32	24	39	27	39	22	40	24
GCCTATAATCAATCTT	ref_3262_RC	22	27	24	19	26	24	33	25	44	20
CCCAATTTTTGTTATT	ref_3262_RC	0	0	0	0	0	0	0	0	0	0
TCCACCCTCACTATCC	ref_3262_RC	29	45	33	28	58	30	52	27	46	17
TTTTGTTGATTAGTCT	ref_3262_RC	57	53	91	61	61	61	74	55	62	54
TCTGTAGTTTTTTCCG	ref_3262_RC	17	20	23	17	32	19	23	16	25	20
GTTACGTACAAAGTAA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
CAGGGGTTACTGTCTT	alt_2029_reverse	4	12	10	8	12	5	16	7	10	5
TGAAGTGTGTTCCTCT	alt_2029_reverse	4	7	15	11	12	6	6	13	16	7
ATTATCGCATTGTTGC	alt_2029_reverse	35	105	46	49	89	22	92	43	101	36
CATATTTGCGGGTACA	alt_2029_reverse	4	7	13	6	18	10	13	4	20	5
TCACCTCGTCAAGCTG	alt_2029_reverse	3	18	8	5	13	8	26	8	21	8
GCTTGTAGGAGTCCAG	alt_2029_reverse	10	20	11	12	24	10	22	6	17	9
GAGCATCTCACTTGGC	alt_2029_reverse	5	8	4	5	5	0	11	8	15	2
GCTATATAGCGGGACC	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCTGCTTGTATCC	alt_2029_reverse	37	61	32	31	78	29	62	21	52	27
ACGCCTGCCTACACTT	alt_2029_reverse	4	5	5	5	8	3	11	3	6	6
GCAGTGTAATAAATCC	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TTGATGCAACGCTTGT	alt_2029_reverse	45	74	53	50	78	46	84	45	100	43
CACCTGCGCATGGATT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGAATGTTCATCT	alt_2029_reverse	15	45	33	17	40	23	44	19	46	27
AGAGTATTCATAGCTT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GAGCGAGACTCCATGG	alt_2029_reverse	18	25	19	17	22	23	25	14	24	19
GGTACCCCACTGTCGA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCTTTCTCTTGGC	alt_2029_reverse	0	1	0	0	6	0	2	0	0	1
CTTGAGCGTGCGTCGG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTGAGTTTCTAGT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TGCCACCTTGTTTTCC	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCGCAGCCAGCTG	alt_2029_reverse	39	67	30	39	76	46	64	31	98	29
CGTTCTCTTTTAAGAC	alt_2029_reverse	2	5	2	1	4	0	2	1	7	0
TCCTGACTACGGCTCA	alt_2029_reverse	7	26	10	5	21	3	26	10	21	2
AGGTTGCGGTTTAGGA	alt_2029_reverse	36	57	47	37	68	59	81	31	63	40
GGACACCCCATCTAAC	alt_2029_reverse	20	34	26	26	35	21	35	32	47	11
CACACTCGGATGGAAT	alt_2029_reverse	8	11	9	7	14	5	13	8	12	9
GCTGCAGGTTTCGGAT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
AATCTCGGGAACGCCA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GCAAATTCTTAGGACA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTTCCTTTTCTAA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
ATATGTATCCCTCGCA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TGAAGTTAGGCTCGAT	alt_2029_reverse	37	71	54	60	53	46	70	49	74	36
TCACACTGTTTATCTT	alt_2029_reverse	167	259	204	175	274	155	260	143	289	152
AGGACACTTGCTAGCT	alt_2029_reverse	1	3	5	4	6	5	4	3	4	3
TCTGAGTGCGGACTCG	alt_2029_reverse	7	14	5	6	12	4	15	6	22	3
TCGTTCTCGTAATTGG	alt_2029_reverse	16	21	30	20	29	25	41	15	36	20
CAATGTCCTGTCAATG	alt_2029_reverse	25	57	22	21	44	9	46	12	47	14
AGACGCGCGTCCAGTT	alt_2029_reverse	112	195	209	118	197	112	213	123	248	136
TTTATCCAAGCGCATT	alt_2029_reverse	5	5	6	5	9	3	6	9	8	10
ATACACACTTGGCAGT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GTCATTTGCTATCTCT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
AAACCACAATCGTTCG	alt_2029_reverse	1	5	4	4	9	2	8	2	2	4
CGGCTCTGTTTCTGCG	alt_2029_reverse	21	31	19	17	19	16	35	16	35	19
CAGTTCAGCCGGAGGG	alt_2029_reverse	20	56	32	32	59	22	57	27	51	18
TTAGGTTCCAACAGCG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTATATGTAGCCC	alt_2029_reverse	7	2	3	5	7	1	1	2	7	1
GATATGCTGCTGTATA	alt_2029_reverse	35	38	36	26	61	39	47	31	61	24
TCTGCCCCTGTGGTAA	alt_2029_reverse	8	26	19	15	31	12	31	12	27	13
TGGCAAGCCTATTGCA	alt_2029_reverse	40	86	44	47	93	44	77	39	93	51
CTGGTGTATTAGCAAA	alt_2029_reverse	31	53	34	22	60	27	74	36	66	31
GTTGGGGGAGTCAAAT	alt_2029_reverse	33	40	20	21	33	24	43	28	52	22
AGCGTGGTCTAAATCG	alt_2029_reverse	7	9	3	3	9	5	5	6	15	2
GTTTAGCCTCAACGGT	alt_2029_reverse	13	23	16	8	15	7	25	7	17	11
GTACCGTCGTCGTAGA	alt_2029_reverse	22	58	45	34	60	34	66	29	56	40
GTTTGGGATGATTGGT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGCAGTCACTCAG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTGTTCCATGGCA	alt_2029_reverse	0	1	1	0	4	1	0	0	0	1
TATTGGCATGTAAATT	alt_2029_reverse	4	4	5	6	5	1	9	1	12	5
TACCATGCCGGTTCGC	alt_2029_reverse	20	63	42	32	54	39	47	23	63	26
CCGTTAGCGCCATTTA	alt_2029_reverse	4	13	1	1	11	4	10	4	13	4
GTTAAGTCTTCCAAGT	alt_2029_reverse	14	25	14	15	21	9	21	13	25	9
GAACAGGCTGTACTTG	alt_2029_reverse	7	14	15	2	19	8	18	9	15	9
TTAGTTTCTAATTTTG	alt_2029_reverse	7	22	10	8	24	12	11	3	15	5
TAGTCCCTATGATGCT	alt_2029_reverse	23	40	18	24	34	13	49	18	35	13
GCCTGAGGCTCTCTAT	alt_2029_reverse	21	33	27	19	28	20	40	19	44	17
CTGGGACTTCTGACCG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTTACTTAAGCTC	alt_2029_reverse	9	7	13	11	12	2	16	7	21	8
TTGTATAGCTTCTTTT	ref_2029_reverse	12	16	11	7	16	6	15	9	15	6
TTTTCACCTCAATCAT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCTAATTGTTAGT	alt_2029_reverse	2	28	5	5	23	6	20	3	16	7
CCAAGTTCACTGTTAC	alt_2029_reverse	1	8	1	1	7	2	9	0	8	1
AAAACTTACAGTTGTT	ref_2029_reverse	17	33	21	12	30	27	38	10	49	18
TAGGGTTTGTAACCCG	alt_2029_reverse	3	8	6	8	6	6	3	2	13	3
TTTCAAATCGCTTGCA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
CTTCATACATGTCCCT	alt_2029_reverse	8	8	10	12	14	11	13	7	8	6
TGACTAGAGCCGGTCA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCGCGGGGGGTGG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TGATTAGGTACACATT	alt_2029_reverse	77	146	86	75	158	76	150	69	170	67
TGTGAATCAATCTGAG	alt_2029_reverse	27	40	27	16	60	19	41	20	43	26
TGCGTTCCTCGCTTTC	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TATACTATGACTGAAT	alt_2029_reverse	1	1	1	0	1	3	6	3	3	0
CGTCGCTTACGTAATC	alt_2029_reverse	11	8	12	10	26	15	16	7	14	8
GTGCATGAGCGATGAT	alt_2029_reverse	16	25	11	11	25	11	21	14	27	13
GCCGAGTAACGTACTT	ref_2029_reverse	5	35	15	20	35	11	24	5	24	5
GCTAGTAATTCAGGCC	alt_2029_reverse	35	63	40	29	69	40	69	39	72	27
AATAGAGCGCGCGTAT	alt_2029_reverse	7	30	14	17	26	6	35	10	17	10
CAACGGATCTTGTGTC	alt_2029_reverse	0	3	0	3	0	0	2	1	5	0
TTTGCTCGGCAGTACT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCATATGTTCTCC	alt_2029_reverse	20	12	16	18	18	6	17	13	22	15
GTTCTGCTTCTGTGGT	alt_2029_reverse	17	18	16	9	19	3	20	16	16	16
ACATGGTGCATTCCCA	alt_2029_reverse	1	0	0	0	0	0	0	0	0	2
GAGAGTTCAAGGATAG	alt_2029_reverse	14	24	10	15	29	18	22	12	21	13
CAGCTGCTCTGTGTCT	alt_2029_reverse	34	95	54	46	115	29	86	29	98	37
GACCTAAGGTCGACGT	alt_2029_reverse	10	32	37	30	47	24	38	15	38	31
AGATAATTTTTGGCCG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GTATACCCTTGGCGCA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCAACACACTGTTTGT	alt_2029_reverse	36	52	37	18	47	28	49	24	50	16
CGTTACGGGCACGGCC	alt_2029_reverse	17	28	16	14	29	12	43	9	43	11
GTTGATGATGTCCCTT	alt_2029_reverse	25	37	36	30	53	25	52	21	51	31
ATCTCCGTGTGGTTCA	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
GGACTGCATATATGGC	alt_2029_reverse	31	31	36	29	35	20	42	20	26	27
AGTGGCAGTGGCGCTC	alt_2029_reverse	15	31	19	14	23	14	20	20	27	18
TGATCCGCCAACCAGC	alt_2029_reverse	17	27	14	12	24	9	36	16	24	13
GCCGAGTTTCCCAAGG	alt_2029_reverse	23	28	40	24	49	19	41	24	49	19
TCCCCAATCGGATGCA	alt_2029_reverse	85	116	114	69	129	78	177	83	165	73
AGCCCCTGCACACCAC	alt_2029_reverse	5	10	6	4	7	4	14	3	12	4
CGAGTGAGCGGTTGTG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCATAGTGCATCGCTT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
AACTCAACGCATATTT	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTATTATACCACG	alt_2029_reverse	4	2	2	2	6	4	6	8	6	3
GTGCTGTGACCTAACC	alt_2029_reverse	15	24	19	6	16	11	20	15	25	11
GTGAGTCCCCAAGCTA	alt_2029_reverse	22	44	35	26	56	36	60	37	63	34
CAATTGTTGATTAATC	ref_2029_reverse	99	238	167	157	254	132	279	136	265	117
AAGTTAGCTTCACGGT	alt_2029_reverse	46	71	43	47	71	33	78	42	78	33
GAGATTTGTCTAGCGG	alt_2029_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTGGGACCTTCTG	alt_2029_reverse	1	2	4	3	6	0	5	5	5	4
CTCTGTTCCTGTAGCA	alt_2029_reverse	7	21	1	4	14	10	16	3	13	7
GCGTAAAGTTCGTTCC	alt_2029_reverse	5	11	17	5	12	6	12	12	12	8
GTTTCACTCCCTGGCT	alt_2029_reverse	7	48	20	16	54	13	47	13	42	13
ATGTGTGCTGCCGCCA	alt_2029_reverse	2	1	7	2	3	3	4	5	3	0
TGATTCTACAACGTCG	alt_2029_reverse	21	48	29	28	61	19	41	31	47	22
TACGAGCCTAGAGTTA	alt_2029_reverse	10	21	17	12	15	6	17	7	8	8
GTATCTGACTAATAGG	ref_1819_reverse	9	9	15	7	7	4	10	6	6	8
GCCCCTCTGGGCGGAT	alt_1819_reverse	19	28	23	14	26	19	38	23	26	18
AGTAGTTATTCCGTTT	alt_1819_reverse	2	5	5	7	1	4	8	4	3	5
GAAGCTCTTTGACGCA	alt_1819_reverse	180	173	187	167	214	141	199	137	241	144
CATGTTCCTACGTTTC	alt_1819_reverse	24	13	11	14	10	17	12	17	25	14
TGGGTGCTAAAACCGT	alt_1819_reverse	7	9	3	3	10	2	7	4	5	0
TTTAATTCGCATATCT	alt_1819_reverse	263	313	302	244	299	231	319	246	352	236
GTGCATGCTATATGTT	alt_1819_reverse	15	57	37	22	52	22	41	20	65	21
CTGACCAAAAAATCCA	alt_1819_reverse	57	69	79	77	119	61	88	70	94	37
TTCGTATGTAGAACGG	alt_1819_reverse	8	11	7	5	8	11	18	8	11	5
CCACACAGTTTCACAG	alt_1819_reverse	6	27	14	12	22	22	33	13	24	11
GTGCCAACATATATCT	alt_1819_reverse	9	25	19	12	24	14	20	20	28	17
CGTTAACCATCCTGAA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCTCTTAGGTCTC	alt_1819_reverse	2	11	4	12	16	9	12	4	9	8
GGCTGCAGTTTAAAAC	alt_1819_reverse	64	75	99	64	94	61	83	58	86	67
CAGTTATCCCGGGGGC	alt_1819_reverse	6	18	24	19	16	15	16	17	24	20
TCACTGCATAGTACCC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTACACGTTACTC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTCTGTTGGCGTT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCCTTTTCGACTC	alt_1819_reverse	26	30	26	24	31	25	31	24	42	22
CGGTAATGATGTATGA	alt_1819_reverse	17	25	18	13	15	16	25	12	12	10
ACCCAGGTCTCTAAAG	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
ACCCACGGTAAGTTAA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAGGCCTCTCTTC	alt_1819_reverse	4	10	13	7	11	10	14	3	14	10
TACTTAATCTTGGGTT	alt_1819_reverse	15	24	13	11	35	16	22	17	20	13
TGTGTATGCTGGGGTT	alt_1819_reverse	19	34	31	10	23	24	28	13	34	15
CCCGCATATGGTATAT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
CAGCATTCATCAATCT	alt_1819_reverse	15	38	33	16	38	25	56	18	39	18
AGGTTTCGGTCCCGCA	alt_1819_reverse	23	31	29	25	42	31	27	25	42	24
GCTTCGGTGATTCTAT	alt_1819_reverse	144	137	169	140	164	136	165	132	191	137
ATTCCACGAGAGGGCG	alt_1819_reverse	15	18	23	17	23	22	17	31	22	21
GCTGGATTTGTTCTTT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAATGCCTCTAGA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTCGCGTTATACC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
GTACGGAGCTTTTACT	alt_1819_reverse	23	39	47	22	33	29	43	20	52	30
TCTTGGTCATGTGTTT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCCATGTAATACT	alt_1819_reverse	74	129	96	107	140	89	168	79	170	83
ATAACCGCAATGGGCA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTCTCGTACGAGG	alt_1819_reverse	31	37	40	39	39	31	65	25	54	26
GTCGTACTTCTACATA	alt_1819_reverse	53	67	57	47	59	51	59	38	61	50
TGGATGTGCGTAATAT	alt_1819_reverse	150	148	166	143	176	144	162	144	191	138
ACTTTGTAGCAAAGGG	alt_1819_reverse	73	65	78	69	78	63	79	56	97	51
TGACCCGGGTTCGGAT	alt_1819_reverse	13	21	15	17	20	29	27	20	37	8
CGGCGGTCAGGCGTTA	alt_1819_reverse	29	48	40	37	23	26	32	23	35	34
ACCGGTGAGTGTCCCG	alt_1819_reverse	53	74	48	44	76	27	71	39	61	38
GCCCGCCTCTTGTCTC	alt_1819_reverse	18	54	18	18	65	21	47	16	66	19
CCTCTGCCGAACCATA	alt_1819_reverse	21	100	28	27	80	20	85	24	93	19
CCATTCCTGATCAATA	alt_1819_reverse	22	41	45	25	27	17	30	19	38	16
GGGCTTTCTACGCATA	alt_1819_reverse	16	22	17	19	23	15	21	4	17	11
ACAGACTGATACGACC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTCAGCTAATTTT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
AAGGCTGCCCTGTTGC	alt_1819_reverse	0	2	1	3	5	2	2	2	1	1
CTGCTTAGCACTGATA	ref_1819_reverse	9	38	26	13	31	9	22	9	23	16
ACTTTCTTGGTCTCGA	alt_1819_reverse	19	24	25	19	33	24	40	20	29	18
GTTTTCCCCTTTACCC	alt_1819_reverse	58	66	70	50	65	37	54	56	65	54
CGCTCTCAGTTTCTCA	alt_1819_reverse	93	165	118	98	150	109	183	85	161	104
TTAGTGTGCTCTGAAC	alt_1819_reverse	22	35	30	19	28	23	38	26	46	15
CTCCTCTGTCTAGATT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TACGCGAAAAATCGCA	alt_1819_reverse	13	24	14	15	27	14	21	14	15	19
TTTCTGCGACCGTACC	alt_1819_reverse	36	45	49	31	38	33	53	25	64	33
CTTTTTTCCAATGTCG	alt_1819_reverse	22	24	29	19	33	18	26	22	26	24
GTTTGATGGGTCAACG	alt_1819_reverse	10	27	19	19	15	19	21	14	14	11
TTTTCGAATACTACCA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGCGACGCTGTCT	alt_1819_reverse	13	28	29	21	29	21	24	21	21	16
CCGCGTTGGCCCTGTT	alt_1819_reverse	12	28	23	10	33	17	40	16	30	10
TACCTGATTGTCCAAA	alt_1819_reverse	7	14	6	11	20	8	13	7	14	6
GTTAAGCCATCGTGTT	alt_1819_reverse	20	27	38	33	36	33	43	20	60	31
AGCTATTCCTCACACA	alt_1819_reverse	31	43	30	27	40	35	32	19	47	17
CCCTCGGGATCATAAA	alt_1819_reverse	35	67	57	53	89	60	51	58	63	56
GGGTCTTTTGGGAGAT	alt_1819_reverse	2	6	6	0	1	0	8	4	4	5
CCTTTCGTGTGAGCTA	alt_1819_reverse	8	6	11	9	10	8	11	7	10	9
TCGCCCTTCTCTAGAA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
AGCGGGCTCTTAATGT	alt_1819_reverse	17	23	15	17	17	13	24	16	23	7
GCCTGGGCTTCGGCTG	alt_1819_reverse	30	32	25	22	20	19	31	18	29	14
TTTCAGAGCGAAAACG	alt_1819_reverse	89	115	101	82	104	88	121	92	130	74
CCTCTTACCGTGCTGG	alt_1819_reverse	15	45	15	8	53	8	50	15	50	12
GATCAAAACTGTTATC	alt_1819_reverse	36	37	35	33	41	30	52	23	44	33
GTGTGGAACTTTTTTC	alt_1819_reverse	34	51	40	36	63	29	51	34	67	37
GAGTTATGGGCAGGAG	alt_1819_reverse	39	70	46	40	49	48	57	41	71	39
TTTTCCGCCTGCGCTC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
AATCAAGATCTGATTA	alt_1819_reverse	33	25	28	22	31	34	40	28	31	36
CACACGGCTAAATCGC	alt_1819_reverse	19	46	15	15	59	10	35	16	39	11
CGTTTGTCTACGAAGC	alt_1819_reverse	24	34	30	17	37	30	32	12	46	14
GACGGCGTGCGCAATA	alt_1819_reverse	106	143	128	113	121	90	140	96	135	107
GCTGCCTACTTAGGTA	alt_1819_reverse	11	30	9	8	26	10	8	15	26	8
TGGACCTAAATATCGT	alt_1819_reverse	19	33	34	23	20	15	25	9	27	25
AAGCCCTGGCAGAGGT	ref_1819_reverse	50	77	63	46	53	63	87	58	82	53
GTATACTTAGACGCGT	alt_1819_reverse	2	4	11	3	5	7	6	0	2	3
TAGGCAGTCTCGGTCT	alt_1819_reverse	38	44	33	43	43	17	50	21	44	26
GTATTATGGGCTGCTT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
CGAGATTCAGTCTGTA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TCTACCCGTCTCTCCC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTTTAAAGGCTTC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
CCCATTAATGCTCTAC	alt_1819_reverse	6	14	10	10	15	17	18	13	28	10
GGTACTTAGGCCACGG	alt_1819_reverse	12	20	19	3	24	18	31	17	19	14
CAACCGTCTTGAAAGC	alt_1819_reverse	53	77	68	73	99	58	93	50	86	48
AGCAAAATAAGTAGTA	alt_1819_reverse	48	76	60	55	64	75	70	58	86	49
TTGCATCTTTCACCAG	alt_1819_reverse	67	80	81	67	90	68	89	58	96	57
ATCGTACGTTATCTGT	alt_1819_reverse	12	17	15	25	30	13	29	17	24	14
CTCCTGTAGAGCTCAC	alt_1819_reverse	11	29	20	15	25	9	21	11	23	10
TTATATTTGCATTGCT	alt_1819_reverse	71	51	69	57	68	68	73	51	71	42
TGCATGTCTGATATTC	alt_1819_reverse	107	149	107	74	109	94	123	96	140	86
AGGTCCAAGCCCTCTT	alt_1819_reverse	4	3	1	5	5	6	3	3	5	5
CATCCGCGTACGCTTG	alt_1819_reverse	27	32	28	23	35	32	40	25	46	31
ATTATGTCATTCGGGT	alt_1819_reverse	17	22	11	11	17	18	23	12	30	17
TCTCAAGCAATTGTAA	alt_1819_reverse	109	149	143	135	174	111	184	89	182	114
TATTCAAATTTACATC	alt_1819_reverse	1	1	0	0	2	1	1	2	0	0
TGACCCCAAAGGTCGC	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTTTAACCCGGAC	alt_1819_reverse	59	30	75	73	35	58	42	49	26	51
TTCAGCCACGATAGTA	alt_1819_reverse	3	11	11	6	15	7	32	11	24	9
TCAGTCCTTGAAGGTT	alt_1819_reverse	38	37	55	29	47	40	51	38	47	46
TCACCGACGGTCATCA	alt_1819_reverse	31	23	18	19	27	21	22	22	41	26
GCAGTAGCTCCGACAC	alt_1819_reverse	21	25	27	21	36	24	36	17	29	32
TTGTCGATTCCGTGTC	alt_1819_reverse	137	131	137	115	130	92	130	129	154	119
TGGATTTATCCAATAT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCCTGCCTATATA	alt_1819_reverse	152	206	192	150	266	157	244	125	247	127
ACGGATTCACCGTTCG	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGTGCCGCACGTG	alt_1819_reverse	8	12	14	10	13	8	13	3	17	10
GTGACACAGTGTTAGA	alt_1819_reverse	19	15	16	9	23	12	31	14	27	22
ACTATCCTACCTTCCC	alt_1819_reverse	27	40	51	38	70	38	56	37	63	29
TATGGAAATGTCCAGG	alt_1819_reverse	9	12	14	7	15	13	15	7	17	5
AGCTCTTCTTGCTTGG	alt_1819_reverse	114	131	128	116	107	126	124	113	134	117
CGTCTTGTCGGTCGCA	alt_1819_reverse	50	64	48	55	55	47	53	42	56	38
CGAATTATCTCCGATA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
CTGATGCGGCTCTAGA	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TTAAAGTTGATATTTC	alt_1819_reverse	25	25	35	25	27	22	26	23	44	16
CTGATAGTCGAACGGA	alt_1819_reverse	19	26	26	21	31	23	40	18	33	18
GTCGCCTCGCCCGTAT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTTATCGGGCGCT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAGGTCCCGGATA	alt_1819_reverse	11	19	9	14	15	11	19	11	10	14
TGGCGCACACCCGTTT	alt_1819_reverse	192	271	239	189	259	195	218	210	258	167
TCGGTTTTGTGGGTCA	alt_1819_reverse	22	21	33	21	33	19	32	19	29	20
CACGGACTTAGCTCCA	alt_1819_reverse	5	5	10	15	13	9	13	13	10	6
CGGCGATAGGGTGCCG	alt_1819_reverse	4	8	12	4	8	7	7	4	4	7
CATATTTTTCATGTTG	alt_1819_reverse	6	17	23	14	11	12	17	9	19	15
TTCCATTTTATTCTCG	ref_1819_reverse	50	32	32	33	41	29	29	35	34	33
GAATCCCTATCTTCTT	alt_1819_reverse	0	0	0	0	0	0	0	0	0	0
TTGTACTTGCCACGTA	alt_1819_reverse	10	13	13	13	16	9	18	12	26	18
TTCTCGTTTGTACGAC	alt_1819_reverse	27	28	24	20	20	26	27	28	28	21
GAGCATACCATATAGA	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
TATTCAGCCAGCGCCT	ref_2031_reverse	19	22	15	16	23	10	24	18	27	12
TATTAGGTACTCCGTG	ref_2031_reverse	28	51	40	44	61	23	43	33	69	34
TGACCTTGACTCGTAT	ref_2031_reverse	6	13	10	10	8	5	14	1	11	3
TTGCATGTAAAACAAG	ref_2031_reverse	22	30	27	19	34	21	29	16	43	18
CGTCCTACGCGCGCGT	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCTCTATTTTTGC	ref_2031_reverse	58	98	88	65	96	72	87	57	97	60
GAGTGTATTATCTGAA	ref_2031_reverse	21	34	17	13	34	18	35	14	35	18
CGCGTGACACTGTTGG	ref_2031_reverse	2	2	4	5	3	0	7	1	4	2
GGTATTGTTCTTCTTT	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGGTTGGATATG	ref_2031_reverse	59	113	87	71	102	54	118	55	98	50
ATGCTGTGACTGACCC	ref_2031_reverse	14	13	15	10	14	8	20	5	13	8
TCAGATCTTCGTCAAG	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
CGCGGGACTTTTTTTA	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
GCACAGGTTGACTGGT	ref_2031_reverse	2	10	8	9	19	6	7	4	17	7
GGTTCGTTTTGAATTG	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGATCGCCGTTGC	ref_2031_reverse	33	66	32	27	52	22	47	16	74	19
TTGTCGTGTTAAACTG	ref_2031_reverse	31	56	44	33	81	34	64	48	74	31
CCCCGTCGGGCGTGAC	ref_2031_reverse	0	11	2	1	19	0	12	2	20	0
ACAGTCTTTTACTCCA	ref_2031_reverse	8	11	14	14	13	11	19	14	21	9
GTTCTATATTCGTGCC	ref_2031_reverse	2	8	4	3	8	5	8	8	9	10
AAACCGGGCTGCTTTC	ref_2031_reverse	6	4	3	4	6	5	8	4	8	2
AAACTTTTATGCCTTT	ref_2031_reverse	42	42	49	47	50	35	38	33	49	59
TACGGGGATTACGCTC	ref_2031_reverse	51	59	63	50	58	43	60	46	73	55
TCAACGGCTCAAATTG	ref_2031_reverse	10	22	14	5	15	5	11	6	16	4
TCGTGAATTTACAAAG	ref_2031_reverse	193	283	204	172	246	144	333	162	311	176
CCAGCTCTTTAACGCA	ref_2031_reverse	7	89	9	9	101	4	106	11	111	10
CATGGTATTACTGTAT	ref_2031_reverse	25	50	31	22	35	21	53	20	52	15
TTACGTTTTTGGTTCG	ref_2031_reverse	74	119	83	80	140	68	105	70	94	61
GTCTCGTCGGTGTGCA	ref_2031_reverse	4	6	5	7	4	7	4	5	12	5
CTCGCATTTTCCACTA	ref_2031_reverse	7	29	8	11	29	10	25	3	30	13
GTTCTTTCATCAGTAG	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCCTAGCAAGGGG	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
GATTCTCTCACCTTTC	alt_2031_reverse	139	156	158	113	186	117	187	126	148	86
CCTCGCCCAGCTCTAG	ref_2031_reverse	30	36	35	30	35	21	49	29	44	28
GGCTGTGCGCATGGCG	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
GGAACTTCTGTGGTAA	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGTAGCAACACTA	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTATTCGTACGGT	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
CGGTATTAGCGTGCCT	ref_2031_reverse	47	66	49	44	63	48	64	52	80	43
CTCGGAGCCTAGAGGT	ref_2031_reverse	69	94	69	71	101	43	86	61	93	51
CCTCGACCAACACTCT	ref_2031_reverse	40	106	72	47	97	47	126	47	102	50
GTAGACAGTCAATTAG	ref_2031_reverse	5	3	0	4	5	5	7	8	4	4
ACACGTACCGTCTCTA	ref_2031_reverse	4	12	10	12	12	7	17	8	25	13
CCTCATCGGGATAAAA	ref_2031_reverse	28	47	34	29	36	24	41	21	43	22
TCAGTCTTGGCAGTAT	ref_2031_reverse	25	54	27	24	56	37	55	19	59	24
CGAATCCTGCTGCTAT	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
TTGACTACTGATCAAG	ref_2031_reverse	122	172	167	142	188	119	160	134	159	141
CCCATCTAAATTAACT	ref_2031_reverse	40	78	55	52	76	52	78	39	75	36
ATATCGACTACTTAAC	ref_2031_reverse	37	49	33	30	51	24	43	34	38	32
TTTTGGGTTGCGGCTT	ref_2031_reverse	7	11	7	5	18	4	9	3	11	4
CAGCTCTGGTTGAAGC	ref_2031_reverse	138	250	164	138	293	128	266	158	281	115
TTCGCCTCTCTATGGA	ref_2031_reverse	26	28	30	21	46	20	33	12	25	28
CCCAAGCCCTTACGCT	ref_2031_reverse	10	4	9	4	6	6	9	0	4	10
ATCGCCTTACGGACAC	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCATTTTGATTCT	ref_2031_reverse	30	30	22	30	42	21	35	31	39	25
GTGCCAACTTGCGATC	ref_2031_reverse	160	205	160	150	235	139	249	143	223	154
CCCCCTATCACGTAAC	ref_2031_reverse	5	4	5	5	7	3	14	0	13	2
CCCACATAAGGGGTGT	ref_2031_reverse	39	75	43	32	60	32	72	25	78	25
CGCGCCGAAACAGTCA	ref_2031_reverse	0	0	0	0	0	0	0	0	0	0
AGGTATAGTTTGTCTC	ref_2031_reverse	11	18	15	19	22	15	22	11	19	13
CCAAATCTAAGGAGAA	ref_2031_reverse	6	12	7	8	16	9	15	6	14	5
GTGCTGCCTCCGAACT	ref_2031_reverse	119	206	162	137	204	142	190	145	228	122
GGGTCGAGGCCTAACC	ref_2031_reverse	15	20	6	6	8	6	6	5	6	6
GGCTTTAGTTTCGGTT	ref_2031_reverse	50	57	55	58	60	68	66	51	60	63
AGCTGTTTGGTTCAAA	ref_2031_reverse	7	8	7	8	22	8	20	5	21	5
AGCTTATTATTCGCGC	ref_2031_reverse	9	20	8	9	15	8	15	3	18	7
TACCACGCCTGTGGAC	ref_2031_reverse	1	6	5	1	7	1	7	2	10	0
ACTACGACGATGGTGA	ref_2031_reverse	51	75	67	65	59	46	99	64	86	54
TTGGATTCTGTAATCC	ref_2031_reverse	26	30	33	30	31	18	34	25	40	26
GCTTCGCGTGTCTCAT	ref_2031_reverse	12	13	16	7	9	10	19	3	5	7
GGGATATCTAGGAGGA	ref_1117_RC	114	106	149	124	103	114	131	108	151	91
TTACACTATTAATTGC	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
TGCTCGGGAACTAAAA	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
AAGCTTTAAGTTAACC	ref_1117_RC	322	370	436	341	414	335	398	297	414	271
TGTTTTCAAGCGGATT	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
TCTGCAAGTCGGCGCA	ref_1117_RC	30	24	31	31	47	22	28	31	45	27
TGAGGCTTTAAGTTCT	alt_1117_RC	16	21	25	14	23	12	14	14	19	25
GGTCCACCGATGTTCT	alt_1117_RC	53	68	70	58	49	59	63	61	69	54
CCGGATTTACACTTCA	alt_1117_RC	9	20	6	5	8	7	11	4	9	7
TATCTGAGGGTTAAGT	alt_1117_RC	151	174	193	171	178	155	181	151	187	130
CGAATCTTTCTCTTTC	alt_1117_RC	32	26	25	32	32	28	24	34	22	38
TTTATGTGTATAGCAG	alt_1117_RC	111	141	131	122	154	117	147	90	140	96
GCGAATTTTCAAACCG	alt_1117_RC	43	40	46	41	43	49	64	48	53	38
CTTCATTTGGGTAATT	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
ATGCTTCCCCGCTGTG	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
TGCTTGATATACCCGA	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
GCAGCCTATTCTAGAA	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
GTATCGACCAGACCTC	alt_1117_RC	52	67	79	63	64	50	55	53	71	44
TTCGATGCGGCAGTTT	alt_1117_RC	29	41	40	38	47	38	34	28	32	39
CTGAATAATTGGGCTT	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
TGCCAGTCCTTTACTT	alt_1117_RC	24	28	21	26	34	27	25	21	42	22
TTCTGAAATTCCCAGT	alt_1117_RC	42	62	48	33	37	38	49	47	50	33
TCGTTCCGTTCTCTCG	alt_1117_RC	20	28	38	27	31	30	30	25	28	22
ATCCCGCTGAACTCGA	ref_1117_RC	66	75	71	80	73	68	73	75	68	66
GTCTGTTGATTATGGA	alt_1117_RC	1	0	2	2	2	1	1	3	3	0
GCTTCAGTTGTATTTC	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
GCCGGGGTGCTTATTA	alt_1117_RC	40	53	37	51	56	31	47	26	46	59
CCATTGTTCGTTGATA	alt_1117_RC	37	107	36	40	130	46	117	39	111	24
TCACTAAAACTGCTGT	alt_1117_RC	22	19	28	20	24	27	15	10	20	16
CGTCAGGACACGTTCT	alt_1117_RC	31	19	32	24	19	19	20	23	17	23
GAAATATGAACACCAA	alt_1117_RC	24	33	28	26	34	44	47	29	37	30
GTGGCAGTTTAATTCA	alt_1117_RC	21	15	17	15	9	8	10	10	18	9
AGTTTCGAGCAAACAC	alt_1117_RC	47	40	47	42	45	42	54	50	46	39
TTTTAGCTTGCTGGGA	alt_1117_RC	0	0	0	0	0	0	0	0	0	0
CACCTTGCCAACAGTT	ref_1117_RC	13	17	21	18	29	9	25	20	28	9
CGAATTCGTAAATGCC	alt_1117_RC	71	87	70	58	103	50	124	70	124	64
ATTGACTTCATAGAAG	alt_1117_RC	28	30	37	17	24	29	48	26	42	23
AGGTTGTTGTAACACT	alt_1117_RC	15	17	14	5	9	11	8	12	13	9
TGTTGTACTGCATCTC	alt_1117_RC	14	20	23	21	16	14	17	12	10	9
GTTGTGAAACTTCTTC	alt_1117_RC	25	33	31	15	31	18	27	25	47	18
CGCTGCTACCTTACCG	alt_1117_RC	7	3	4	5	4	0	5	3	2	0
TGCCGCGTCTGAAAAG	alt_1117_RC	114	116	117	104	125	97	157	90	143	105
TGCCGGTCACTTCGTA	ref_13_upstream	6	7	4	4	4	0	6	2	11	2
GCCAAGGCACTGTCTG	ref_13_upstream	30	18	25	22	18	20	20	16	15	26
TCCTTCCTCGTAAAAT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGTACCAGACATG	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
GGACCGGTATATATCG	ref_13_upstream	10	4	8	13	5	7	4	5	9	6
TTTGCTTTCGGACTGT	ref_13_upstream	102	69	93	83	63	92	69	90	88	81
TGTGCGGCAGGACGTG	ref_13_upstream	40	28	54	66	29	44	37	27	29	53
TGATGTCCTTTGTGTT	ref_13_upstream	29	27	52	45	24	28	22	33	25	37
CGGACGCATAGCCCCC	ref_13_upstream	39	19	46	32	18	21	13	35	29	25
TTTATGTTCTTTAGAG	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
GATTGATACGTTAAAA	ref_13_upstream	3	5	3	5	0	2	1	1	1	0
CCCAACGTCATATTGA	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTGTCTCTACGGT	ref_13_upstream	39	22	75	48	48	39	39	61	41	45
CGCCCTAATGACTGTC	ref_13_upstream	105	61	97	105	56	101	80	87	76	76
GGACTCTAGCCTTCTG	ref_13_upstream	92	60	114	92	81	95	95	100	63	85
AAAAGTTCCGTCTTGA	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTAGACAATCGTT	ref_13_upstream	168	111	221	158	99	144	123	166	111	132
GACCGGGTTGGCCAAT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
AATAATAAACGCTACT	ref_13_upstream	45	26	59	44	36	38	36	44	31	30
ATTGGACTGTCCTGTT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
AGGGGCGTTTGAATTG	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTAATCTCCTGT	ref_13_upstream	507	404	590	550	458	455	441	447	458	429
CTGCACTTTGAAACCC	ref_13_upstream	96	58	140	111	66	107	73	118	75	93
GGCCCACGGGTCAAGA	alt_13_upstream	123	64	158	126	90	145	84	129	78	126
TCTTGCAATCTAGAAC	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGTTTTGCATCTC	ref_13_upstream	88	49	110	114	74	75	67	100	72	69
GGTCTCTCTATTTCCG	ref_13_upstream	32	15	57	28	26	29	14	26	22	20
GGGTATACGCCTGGAT	ref_13_upstream	4	6	10	4	5	7	5	7	2	7
ATGAAAGATTTGCTAT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTTTTTTTGGTCT	ref_13_upstream	24	16	34	22	16	29	23	24	9	21
AGTTGTGTGATTTCAA	ref_13_upstream	80	54	90	58	61	63	56	60	61	55
TGTGCTGCCACCGCTT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAAAATCCTGATA	ref_13_upstream	5	8	16	10	7	12	8	10	4	15
CCCTGAAAGGCTACAA	ref_13_upstream	302	197	377	323	200	257	212	264	183	278
CTTATTACTTAGCAGT	ref_13_upstream	21	19	38	32	32	37	18	33	20	30
CTGTCTGGGTCGGTGT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTCGCTGCCAGTC	ref_13_upstream	59	20	65	69	30	47	42	68	37	49
CTTTCGAGTCCTCCTC	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
AGGACATCCTAATGGG	ref_13_upstream	17	6	37	34	22	26	13	24	23	29
GTATCTTCATGTGATT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TATTACTGCCCGGTGC	ref_13_upstream	82	55	110	108	61	75	80	86	64	84
TCAATCGTCGGGCAGG	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
GCGGTGGCCCGCCACC	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
AAGGATTGATGTGGTG	ref_13_upstream	23	30	41	37	17	27	28	30	27	27
GTCTTAAATGCTTAAA	ref_13_upstream	123	83	140	142	80	110	84	104	94	102
GTTCGCAGATGTCGGC	ref_13_upstream	74	42	80	54	30	60	35	51	45	50
CGCCTGATCCACTAAG	ref_13_upstream	64	53	51	56	36	44	56	43	60	46
CATGAGTTGAGTTTGT	ref_13_upstream	9	8	15	4	5	6	2	6	6	5
CTCGAAGCAGCATATA	ref_13_upstream	96	75	135	98	63	85	88	88	84	84
TTTCTCCGTAGTTCCG	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGTCTAACGCAC	ref_13_upstream	85	34	66	67	72	68	51	82	63	57
TCGGGTGGTCAGTATA	ref_13_upstream	91	86	140	122	75	94	65	79	61	76
AATGCGCAATCTGGTA	ref_13_upstream	101	79	142	132	75	101	69	85	85	82
AATATTCCAGGTTGGG	ref_13_upstream	76	63	90	78	63	76	43	87	60	75
TTATCCGCGATGGCGA	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGAAAATTAGTAC	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
CCCTAGCCACGGGCCA	ref_13_upstream	15	11	11	27	13	10	13	16	12	16
AAGTCCTATTAGTCAG	ref_13_upstream	66	64	114	109	50	82	63	80	75	78
TCCTTGTTACTGGTCA	ref_13_upstream	78	59	134	89	51	85	60	79	76	59
GTAACTGGCAAATTGA	ref_13_upstream	106	57	105	95	74	97	72	84	71	77
GCAGCAAACACTATAA	ref_13_upstream	60	51	81	77	39	55	37	80	41	68
GTGTTGTTAGTCGCTT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
CAAATTTGGAACGGTT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAATATGTCTCTT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGCTCCTTAGAGC	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
ACCATTCATTGAAACA	ref_13_upstream	36	32	41	36	21	48	23	23	36	34
ATTGCTATTGCCAGTC	ref_13_upstream	747	501	1013	811	506	802	529	821	549	681
CTTTTGTTTGAGAATA	ref_13_upstream	6	10	12	22	7	7	11	12	10	16
GCGGTCCTTGTCCATG	ref_13_upstream	11	9	9	9	8	6	7	8	2	8
CATACTTCCGCTATAG	ref_13_upstream	151	158	188	149	172	165	167	159	174	125
AGCACTCGTGCAGTTT	ref_13_upstream	110	89	111	95	98	103	89	115	80	92
GTTTTGGTATGTTATA	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTTCATAAATCAA	ref_13_upstream	38	11	28	33	16	26	24	20	19	30
TATACGTCCACCGTCG	ref_13_upstream	2	3	4	0	4	3	3	2	3	1
AGTGTAAGATGCGGCA	ref_13_upstream	206	126	276	231	135	175	146	213	139	178
TCCTGTTTATCGATTG	ref_13_upstream	45	36	38	46	24	30	28	40	18	22
GGCGACCTATAAGGCA	ref_13_upstream	157	125	194	199	99	155	99	172	136	138
TCTTTCTCCTGGAACC	ref_13_upstream	88	59	100	79	61	71	72	53	60	78
GCGGTGGACCGCCACC	ref_13_upstream	303	205	373	357	248	278	218	316	225	279
CCACTACACGTAAAGG	ref_13_upstream	61	42	84	84	49	49	52	80	62	57
CGAATCCGCAGTTCGC	ref_13_upstream	58	36	57	37	36	35	36	38	30	53
CATTATCCTTAGAGCT	alt_13_upstream	52	34	48	52	39	58	39	38	49	41
CACTGTAAGGATCAAA	ref_13_upstream	58	26	48	41	31	42	36	36	28	37
CAATAGGCTGTTCGCT	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCAAATTCCTTTT	ref_13_upstream	83	48	98	79	51	89	34	63	48	71
TTTCTGCCAGCACAGG	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTCGCCTGTGCC	ref_13_upstream	108	161	147	143	164	91	142	108	171	92
CCTATCGCATTAGCTC	ref_13_upstream	13	14	20	6	8	6	13	8	7	5
TCCGACGCCACTACTG	alt_13_upstream	33	25	39	31	23	28	29	22	22	23
ACCAAAGGCAGTGGTA	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
ACACCGCAGATCGTCT	ref_13_upstream	46	15	34	37	12	32	25	32	17	30
CTCTCACTTTTTGCAT	ref_13_upstream	25	19	41	38	25	29	33	28	21	26
AAAGGTTGGAAGTTGC	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
ACAGGAGCCCCGCCTA	ref_13_upstream	0	0	0	0	0	0	0	0	0	0
TAAACTCTTATTGGAG	ref_13_upstream	136	81	161	140	107	149	82	137	110	128
TTATATAACCCCGCCT	ref_13_upstream	67	44	64	69	63	74	56	69	47	57
GCCAATTTGTAGAAAG	ref_13_upstream	10	6	2	11	6	11	3	4	6	8
TGCGGATTACTCGAGA	ref_13_upstream	42	15	43	48	22	33	24	45	17	33
GGTTTAGCAGTCCTAA	alt_2989_fdr	540	241	682	670	241	590	292	532	266	528
CTAGCTTACCGCTACA	alt_2989_fdr	141	84	180	185	103	166	93	177	88	151
CAGGTTTAGTGTTTCA	alt_2989_fdr	15	7	7	8	9	8	9	5	3	6
TAAACAGATGGCGCCA	alt_2989_fdr	124	25	154	131	29	112	41	121	47	97
AGCGGGGCATAATATA	alt_2989_fdr	124	48	142	124	49	120	53	109	60	80
CTTTGCAGGCCGCCAA	alt_2989_fdr	25	6	30	37	8	20	12	28	12	20
TTGTCAAGTTCTATTA	alt_2989_fdr	21	16	29	27	6	13	15	19	9	12
CGCAGTTCAACATCCA	alt_2989_fdr	16	12	18	19	12	14	13	9	4	17
TATAGGCTGTCGGTTA	alt_2989_fdr	185	69	210	199	56	154	80	159	83	170
GAGTATTGCCGTGGCA	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTGGGGCAAGGGC	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
TAACTTCGATCGGGCG	alt_2989_fdr	19	20	34	12	9	20	6	19	10	17
ATAGCTTAATCATTTG	alt_2989_fdr	83	34	105	80	32	74	31	85	42	74
TGTGATACCTTTGACC	alt_2989_fdr	90	53	129	95	49	76	56	99	55	78
TTACATCGCAGACCCT	alt_2989_fdr	364	164	450	411	140	348	156	345	151	296
GTGAAGCTTAAGCACT	alt_2989_fdr	35	15	42	32	9	33	20	37	19	27
ATTTCGTGTAATCTAT	alt_2989_fdr	88	43	134	119	52	101	65	104	48	72
TCGCGCTAGACGTCCG	alt_2989_fdr	48	32	76	54	33	51	35	69	32	56
CGCAGTCTGTTTTAAG	alt_2989_fdr	69	21	64	74	25	59	29	41	33	60
TCTGGATCTCGTCAAA	alt_2989_fdr	28	19	40	25	12	27	15	35	11	25
AAGAGGAACCGTGTCG	alt_2989_fdr	94	26	83	68	26	66	32	53	35	62
GTATCCGGTGACCTCC	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGTCGGAGCAGAA	alt_2989_fdr	36	13	49	35	14	24	19	29	10	26
TGTAGATCCTAGAGTA	alt_2989_fdr	118	33	115	99	49	79	51	98	35	82
GTGCTAAGCGTGATTA	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTTCAGTCGCCGA	alt_2989_fdr	98	49	147	98	38	103	53	100	53	111
GCACTGAGTAACACAT	alt_2989_fdr	81	30	97	76	34	99	36	64	27	75
ATACGAACGCATCATC	alt_2989_fdr	52	29	68	61	18	55	20	59	23	44
TGTAGCCGGTATTATT	alt_2989_fdr	101	35	160	107	41	117	59	108	56	105
TCTTCCTAGTTTACAC	alt_2989_fdr	185	82	184	173	109	143	80	130	79	137
CGCGAGCTGGCTCTGC	alt_2989_fdr	44	28	44	60	20	55	20	36	28	38
AGTGCCGTCTAACCTG	alt_2989_fdr	231	157	329	268	130	221	144	228	154	213
GTCCTTAGACGTTAAC	alt_2989_fdr	99	48	112	95	44	73	34	90	47	97
TTTCATTATCCTTGTT	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
CATTCGATTTTAATAT	alt_2989_fdr	113	55	111	107	53	118	47	97	51	93
CTGGCTAGATAGTTAA	alt_2989_fdr	69	43	91	83	36	71	46	65	32	77
TTCACGTTTCAGTGAG	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
CAATCGAGGTCCAAAT	alt_2989_fdr	95	37	119	89	64	105	42	86	65	87
AGTAGCTATGCTAAAT	alt_2989_fdr	154	89	227	175	72	187	62	165	75	128
TACATTGCTGTATAGA	alt_2989_fdr	115	69	149	148	65	100	57	141	52	110
GTTGGTAGAGTTAAGG	alt_2989_fdr	191	79	226	224	98	197	104	189	108	173
GCCTGGCTGCGTGTCT	alt_2989_fdr	7	4	10	7	0	7	4	12	2	11
TTGCTGTTTTAGAGGC	alt_2989_fdr	16	3	18	16	6	19	8	20	13	9
GCCGTCCAAGTGATAT	alt_2989_fdr	225	101	289	258	126	239	110	215	126	205
GTTTAATTTAGATCGT	alt_2989_fdr	65	21	68	67	27	61	26	51	25	57
GGCTGAGCTCAGAAGG	alt_2989_fdr	111	47	150	149	45	106	52	124	62	111
CGCAGGGAAGTGGTCC	alt_2989_fdr	13	5	19	16	11	8	7	22	12	24
TGTCGGGGTCTGCATT	alt_2989_fdr	38	17	55	33	19	34	23	31	21	36
TTACATCGCAGCCCCT	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
TAACTTCGATCGGCCT	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
TGACGTGCTGTTAATG	alt_2989_fdr	36	13	35	42	14	33	16	36	22	32
GAATCGCTTGTTCCCG	alt_2989_fdr	2	0	7	2	2	2	1	5	1	1
CGTTCGTCAGCAGAGG	alt_2989_fdr	421	185	514	492	188	354	205	369	191	362
TTTCGCTACTGGGTCC	alt_2989_fdr	48	18	46	43	19	41	34	48	18	38
TATGCTCATACTCCTC	alt_2989_fdr	13	9	11	19	5	17	2	20	9	20
ATACTCTTGATGTCTG	alt_2989_fdr	79	26	74	58	24	59	28	90	29	51
TGGGTCGTTCTAACGG	alt_2989_fdr	54	29	108	85	35	71	38	74	29	58
TTTGCTGTACGATCGT	alt_2989_fdr	110	45	148	112	49	98	53	106	55	91
TTCTGCCTCCAACTTT	alt_2989_fdr	122	53	135	124	69	97	55	110	58	127
TCTTTGCCACGAAGCG	alt_2989_fdr	120	62	191	146	57	111	69	155	68	118
CGCGACTGTCTAGTGA	alt_2989_fdr	64	25	76	86	51	57	39	68	47	50
TTAGCTTCCACCAGAT	alt_2989_fdr	74	40	94	65	26	78	39	47	38	60
GCATGTTCCCGATGCT	alt_2989_fdr	72	21	77	71	45	43	26	65	32	70
GCGAGCCACTAACTGC	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
ATTCATCTCCCGCCCT	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTACCGGTCGTTA	alt_2989_fdr	169	110	246	237	75	233	99	189	92	187
CCCTCTGCCGTCTGTG	alt_2989_fdr	45	34	49	53	44	22	42	41	55	43
TTGTGCAACATCGCCA	alt_2989_fdr	135	62	156	145	65	120	92	107	90	121
CCAAAACGTGAATTTC	alt_2989_fdr	57	28	77	64	28	71	21	57	25	62
TCCATGTCAGCTGGTT	alt_2989_fdr	49	14	46	41	32	38	22	30	33	33
GCGCGTTCGCGGACCG	alt_2989_fdr	146	62	205	177	85	167	72	142	66	135
ACCACCTAGACCATGC	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTTGCTGACATTC	alt_2989_fdr	117	48	131	121	62	113	52	99	56	85
TATTCGGAGAAAGATC	alt_2989_fdr	144	57	186	159	45	141	58	133	56	148
GTACAAGTGAAAAGCT	alt_2989_fdr	694	294	866	746	283	706	293	618	313	573
CCGTACTGTAGTCGGT	alt_2989_fdr	13	5	13	12	7	13	13	23	9	9
ATTCAAGATGTCTCTT	alt_2989_fdr	339	147	388	325	179	292	194	312	158	271
AGGCATCCCCTATTTA	alt_2989_fdr	12	15	10	17	5	16	15	13	15	16
CGAAGGCGATTGGTAC	alt_2989_fdr	82	23	90	66	30	59	20	52	28	75
AATCAAGATGTCTCTT	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
AAAAGGTTCCGTCGTT	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTGTGAAGTGAAA	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCAATTTGGCCTT	alt_2989_fdr	45	26	72	43	21	40	27	46	25	37
GTGACAAGACGACCGG	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
AGCAATTTTATGCCAG	alt_2989_fdr	68	37	54	56	34	79	32	67	41	55
AGCCAATTATAATCGA	alt_2989_fdr	19	13	64	46	20	44	23	42	28	33
TAGGTTGAGCCAGTCA	alt_2989_fdr	151	61	198	134	57	141	79	138	64	120
CAGTCCTCGAGGAGAA	alt_2989_fdr	44	18	43	49	19	54	19	36	16	39
TGAAGGAAGGAAAGTG	alt_2989_fdr	68	20	84	83	41	54	20	71	39	56
CGGCCACCTGACAGCA	alt_2989_fdr	19	36	36	43	44	29	41	24	28	23
TTTCTGTGCGCGTACA	alt_2989_fdr	95	57	132	113	56	75	41	69	56	81
TGAATATCAGAATGGC	alt_2989_fdr	35	20	39	29	9	32	13	43	13	28
AACCTATCTGGAGCGT	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCTTGTTTGGGTG	alt_2989_fdr	24	14	40	33	24	26	12	35	25	21
TTCTGCCATATGTTAT	alt_2989_fdr	61	29	95	51	32	53	38	45	31	63
TAATACGTTGAAAACT	alt_2989_fdr	20	7	27	25	8	17	5	25	8	11
TTGCTAATCTAGACTA	alt_2989_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGCTTTCTCTGAT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTCGTTTCTTCAC	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGTGATTTCATTCGTA	ref_3569_upstream	24	19	29	14	29	16	30	20	27	20
ACTAGCGTCGGTGTCT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCTTTAGCCCTAG	ref_3569_upstream	38	52	35	35	46	28	40	23	49	23
TCGGTACCTCCCGACT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
CGCCATAACTTCACCT	ref_3569_upstream	17	21	20	27	34	16	31	21	41	17
TCCAGAGCCTTGTTGT	ref_3569_upstream	2	6	5	3	0	3	12	3	8	5
CGGTCGAAGAGAGTAA	ref_3569_upstream	3	0	0	1	0	0	3	0	2	0
CTCGATACTGTGGTGC	ref_3569_upstream	31	38	41	25	32	28	37	28	38	27
TTAAGTTCGCGCTTAC	ref_3569_upstream	65	109	98	71	75	55	105	50	120	80
AGCAGTCCGGTGAGGG	ref_3569_upstream	1	13	21	16	12	12	13	6	15	10
GAAGCCGTTCACGATT	ref_3569_upstream	3	3	7	6	5	9	4	4	10	3
TAAATACTCAGAGACG	ref_3569_upstream	10	14	5	5	8	8	10	9	8	1
ATTGTTAATGGCCGGT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GGAGGTTTGTGAAAGC	ref_3569_upstream	48	68	51	45	56	48	68	52	58	52
ATAACGTTATTTATCC	ref_3569_upstream	64	72	75	71	51	74	84	66	66	71
TGGACTTCTTAGGCGC	ref_3569_upstream	16	18	26	17	28	21	23	20	28	22
CGTCGAGCACGCCATC	ref_3569_upstream	11	5	13	3	7	14	9	9	10	7
TGAGGTAGACCTGACA	ref_3569_upstream	31	46	32	24	43	27	42	22	26	30
TTTCAGAGGTCTAGGA	ref_3569_upstream	9	2	2	3	1	0	7	3	7	0
GCATTCCAGGCGTTTA	alt_3569_upstream	127	147	118	131	166	140	153	117	171	99
GTGGGGAAGTACATGC	ref_3569_upstream	9	15	12	8	10	6	7	4	10	5
ATAGCCTCTACTCGGT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
CGTGAGCCGCCCTCAT	ref_3569_upstream	29	51	34	36	33	24	44	34	56	24
CATATGCAGCCGCGCT	ref_3569_upstream	30	42	35	20	47	37	50	40	37	35
CCGCTTTGTGGTGGTC	ref_3569_upstream	4	7	8	11	6	8	8	5	12	8
GTTCATTGCGGTCTTA	ref_3569_upstream	43	37	44	49	43	41	68	35	64	40
GGTGAATCGTCTTCCA	ref_3569_upstream	25	24	33	30	29	22	35	24	34	24
TCTAAGAAGTACACGG	ref_3569_upstream	15	12	14	10	12	8	14	1	13	12
CTCGTCAGTGGGGGGT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGAAGGACTCCGGTCT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
TTAAGAAGACGAATAA	ref_3569_upstream	69	93	73	63	76	69	88	53	93	50
GCATTTATTTTTGTAT	ref_3569_upstream	42	40	73	69	72	58	65	58	73	61
ATTGAATTACCACCTT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GTAGCTTCTTGCAATT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAACAGTATAATA	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCGAAAGTCGCTT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGGGGGTTCGACT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTACGTTTGTTAC	ref_3569_upstream	50	51	50	38	62	28	56	41	61	26
TCATGTGAAACCTTCT	ref_3569_upstream	21	25	22	13	23	18	18	21	22	14
CACCTTCTATTGACCT	ref_3569_upstream	38	54	48	46	48	37	43	27	55	34
GCGGCGATAGGTTTCA	ref_3569_upstream	14	10	10	4	9	17	12	7	17	9
AAGTTTAGCAATGCAA	ref_3569_upstream	1	0	0	0	0	0	0	0	0	0
CTGTTATTTGATTTGA	ref_3569_upstream	62	65	80	83	62	47	97	60	73	56
GAGCGTTGTTGGCGCG	ref_3569_upstream	18	32	29	21	31	15	21	20	34	16
GTCGTACCCATGTTGT	ref_3569_upstream	9	11	5	7	6	5	8	0	10	5
TCCACGCCAACTTTGC	ref_3569_upstream	13	15	8	5	15	6	18	10	15	9
CCAATAAGCCTATTCT	ref_3569_upstream	7	20	11	8	28	14	26	7	27	6
AATTCCTTTATGTGTC	ref_3569_upstream	20	21	20	12	17	19	14	18	13	15
TTAGAATATTCTGCGG	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
TAATAAAACTTCACGG	ref_3569_upstream	2	5	5	3	2	6	4	3	8	2
TCCCCTGGTTTCACGC	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GGAACATTTTTCTCAT	ref_3569_upstream	52	86	51	68	79	46	68	52	96	40
GTTGCCAAAGCCGTTG	ref_3569_upstream	1	2	1	0	2	2	0	0	1	4
CTCGTTTCCGTACGGG	ref_3569_upstream	57	89	70	77	98	66	99	70	114	69
CCCCCCATATATTGCT	ref_3569_upstream	19	10	21	12	10	11	22	7	6	8
TGTGAGCTCTCATGTG	ref_3569_upstream	20	39	32	31	35	22	51	25	44	19
TTAGTTGTATAACCTG	ref_3569_upstream	54	73	87	68	73	76	76	70	101	47
TCGGTGAACGGGCTCT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GGGTGCCTCCGGCGCG	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTTTATTCTACAG	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
CTTATAATGTAGCAAA	ref_3569_upstream	16	36	31	15	19	17	35	12	22	18
ATCATACTCCGGGAAT	alt_3569_upstream	57	91	79	80	86	81	104	61	97	57
ATCATATGTACATTTT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGGACGTATTACAGAA	ref_3569_upstream	18	20	11	15	15	7	19	8	19	12
TGCTCATAAGATCCTG	ref_3569_upstream	44	47	63	51	60	53	42	28	61	40
TGGTGGGCGGTACCCT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTGGTCTAGACT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAAGTCAATCATG	ref_3569_upstream	10	12	14	7	7	4	18	14	9	8
TATCGTTCCCCCGGGC	ref_3569_upstream	53	67	50	70	72	51	77	44	63	53
TGAAGCTCCCCGTTGG	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCTTTATGCAACT	ref_3569_upstream	27	42	43	38	45	27	38	25	48	12
TCATCAAGGCAGCTCG	ref_3569_upstream	17	21	29	28	22	18	15	7	24	23
CTCGCGAAGTTATAGG	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGGGAGAGTAACT	ref_3569_upstream	21	14	23	24	20	18	21	14	13	15
TATTCTTTATGCTTCT	ref_3569_upstream	50	62	96	82	90	64	53	70	66	71
GGCTATAGGGAAGTAA	alt_3569_upstream	10	4	7	8	10	11	9	8	6	8
ATCCAAGTCCCTTCTG	ref_3569_upstream	1	4	9	3	6	8	4	6	7	5
GCTTCCCCTCCTATCA	ref_3569_upstream	0	2	0	1	3	0	0	1	6	2
GAGCTTATACAGCTTA	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTGTCAACTAAG	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GATTGTTTTGTCCAGA	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGAATGGCTGTGT	ref_3569_upstream	24	20	22	21	18	23	15	20	24	18
GAGATTCGATAAAACA	ref_3569_upstream	21	24	23	12	22	19	22	21	35	17
TTGTATAAATGTGCAA	ref_3569_upstream	6	6	18	14	7	10	3	4	10	4
ATAAAGCGTCGGGGCC	ref_3569_upstream	35	34	51	27	39	26	31	27	48	23
AATCTATTTTCTCTGC	ref_3569_upstream	16	13	22	15	20	9	18	12	19	12
TCCTTTTGTATCTCTA	ref_3569_upstream	37	42	50	38	43	52	60	39	52	35
TGCCATCGTCTTTTGG	alt_3569_upstream	90	119	109	87	116	84	149	81	178	63
GATACGTGCGGTTGTG	ref_3569_upstream	12	13	17	10	19	17	17	5	10	7
CTGTCAACGCGCCGGA	ref_3569_upstream	11	30	10	11	28	19	24	8	20	4
CTGCTAAGTCTTTAGA	ref_3569_upstream	5	11	10	17	22	11	21	12	15	7
TGCTAAAATGCTGTAA	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
TTGCACTTTACTTTCT	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCCATAATCGGAG	ref_3569_upstream	19	14	12	16	19	22	23	13	16	9
ATCATAACGGGCATCG	ref_3569_upstream	32	30	48	25	41	37	37	25	39	17
AATCTGTTTAACACTG	ref_3569_upstream	2	4	9	5	5	10	4	3	2	9
GTTTATGGTCTCTTCT	ref_3569_upstream	75	72	94	50	71	71	70	55	77	59
CATTTTGTTCGACTTC	ref_3569_upstream	51	56	53	42	66	40	63	37	48	34
TCCTTTATTCTCCGTA	ref_3569_upstream	21	17	22	19	16	11	20	12	20	13
GTCTTCTTCTTCAATA	ref_3569_upstream	25	24	26	30	28	14	38	16	25	15
CCCAGTAGTCGGCTTA	ref_3569_upstream	22	21	25	18	22	25	16	23	28	25
CGTTTTTCTGGAGTGC	ref_3569_upstream	21	25	15	27	20	18	24	16	23	15
ATGGCTTTCGGGTCCC	ref_3569_upstream	25	31	28	29	29	30	44	26	29	19
CTTTTTCACAGCGCGC	ref_3569_upstream	14	13	20	14	17	11	10	6	19	14
TCCATTTGGTGCTCGA	ref_3569_upstream	10	16	18	22	17	12	35	19	21	16
GTCTGCGCTGGTTCAT	ref_3569_upstream	71	74	69	73	79	59	97	69	103	52
TTGTCTCTTCGCTTTT	ref_3569_upstream	63	77	105	73	63	52	50	47	82	48
CTAAAAAATCGCTAGC	ref_3569_upstream	14	14	10	14	19	9	15	12	14	9
TTTGCACTCTTTTGCG	ref_3569_upstream	17	26	28	18	19	16	24	19	24	16
TAGTAAGTACCCCTTC	ref_3569_upstream	14	25	18	14	15	9	14	9	13	6
TATATAGCTCATGACC	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGATCCGGCTAGGTTC	ref_3569_upstream	25	32	19	25	31	27	33	28	42	19
TTTCAGCGCTACTTGC	ref_3569_upstream	3	7	12	7	9	11	6	3	10	8
CACAGGGCAGAACTTC	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
GCAGAGGAGACATCTT	ref_3569_upstream	14	16	17	13	14	7	16	16	7	10
CTGGGTTAGTTGTATT	alt_3569_upstream	29	36	35	26	37	35	57	37	50	33
CCTGGGTTACGCCACT	ref_3569_upstream	17	19	18	14	20	15	24	21	17	19
CATCTTGCTGTGACTT	ref_3569_upstream	45	52	71	49	52	36	42	32	68	35
TTCCTCCACTCTCTCT	ref_3569_upstream	0	0	1	1	1	1	5	1	1	0
CCCCCAAGATTCGTGC	ref_3569_upstream	65	37	56	54	46	40	49	49	50	52
TTCTTGGTGGGCATGT	ref_3569_upstream	16	20	19	27	34	22	34	27	28	17
GTCTGTCGGTGTACTA	ref_3569_upstream	20	20	16	19	20	9	28	21	21	12
ACGTATCTGTGACAAG	ref_3569_upstream	29	30	16	17	31	28	30	29	30	26
ACCGATTGTCCCTGTA	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTAGTGGTGTCGG	ref_3569_upstream	7	16	14	11	15	12	16	6	14	11
AAAAATGCCGGTGATC	ref_3569_upstream	14	19	14	12	9	7	15	13	12	14
GATGTGCGTCCTAAAC	alt_3569_upstream	134	180	169	141	201	128	172	118	199	131
AGATTCACCTCTCGTT	ref_3569_upstream	19	32	18	28	19	21	19	16	23	28
GAATTCGGTCATCGTG	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
ATTATCAGGTTAGGGA	ref_3569_upstream	300	319	320	264	309	243	323	263	324	232
TCCTATGTAATACCGT	ref_3569_upstream	21	30	17	13	29	10	25	21	15	13
TGTATCCGCCATCGAT	ref_3569_upstream	4	6	8	4	8	4	5	6	8	5
TGTGTGAACTGGTCTT	ref_3569_upstream	30	54	54	45	36	40	60	25	71	33
CTTATGATCTGAAGTA	ref_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGGGATAACTGCGTTT	ref_3569_upstream	59	74	48	49	66	50	54	45	69	41
TCTCTGGGCTTTGCTT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TACCCCGATTTATAGG	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCTTTGTGTTCTA	alt_2272_upstream	19	23	18	8	24	9	28	10	35	6
TATACTCAATACCAAA	ref_2272_upstream	67	109	82	86	108	66	105	84	101	67
TCGCAGCCAGAATCCA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CCGATAAAAGAGCTCT	alt_2272_upstream	10	64	12	14	57	10	55	14	62	13
ATTCTTATCTATTATC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTGCTGGTTAGGC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGAATTCGTCAAA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
ATGGAAGGTAGGGCCA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGGGACCTACTGTTCT	alt_2272_upstream	1	3	0	1	5	1	0	0	1	0
ATGGTTCCTTGCGCCA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGATCCAGTAATAAGC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTAATGGAAATCC	alt_2272_upstream	39	66	63	32	90	39	92	48	96	45
GGTGGACATTTTTTAT	alt_2272_upstream	24	31	20	24	32	20	26	23	27	22
ATCCACTTTAGGACGC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GATTGCTCGAAGAATG	alt_2272_upstream	20	11	15	17	14	10	22	12	20	13
CCCCATTGTCTCGGAA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGATTTTTCTAAA	alt_2272_upstream	30	66	37	26	60	33	78	31	77	41
CCACTTAAGAGTCCCG	alt_2272_upstream	22	20	20	12	27	21	31	13	33	20
AGGTAGGAGATCGTGT	alt_2272_upstream	1	10	3	4	11	5	9	3	13	10
GTTTTTGCTCGGTGCC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAGAGTTCATCGC	alt_2272_upstream	13	18	11	16	21	13	41	11	29	14
TAGGATACAAATCTAT	alt_2272_upstream	4	8	7	10	9	10	14	10	12	10
ACCAATTCTCTTACAA	alt_2272_upstream	7	5	6	5	11	4	8	4	5	3
TGTAAATACCGTTTTC	ref_2272_upstream	86	104	93	75	104	71	114	73	121	68
GCAGCCTGTGCATTGA	alt_2272_upstream	13	56	8	25	36	12	56	19	67	14
AGGCGCGCTCACTGCT	ref_2272_upstream	130	136	191	155	197	133	169	123	206	137
TGCCTTATTACTAATC	alt_2272_upstream	0	1	3	2	4	3	1	2	0	4
CCCCATTAGAGTGTGT	alt_2272_upstream	12	13	10	15	24	22	23	11	17	11
GCTGATCAGTTTTGTG	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GCACGAGATTGGGACT	alt_2272_upstream	98	148	93	82	152	81	155	75	153	79
CACGGTCATCCTAGTT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTTTTCGTAATGG	alt_2272_upstream	8	9	5	4	11	3	15	7	11	1
CCCAACTCTGATTTTA	ref_2272_upstream	169	323	239	226	376	201	340	236	402	174
TTGTCGCTGGCTAAAC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CCGACTGGATCTCTTT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TCAGACTCTATTGGCC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGGACTATCTTCT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTCGTTGTACAGG	alt_2272_upstream	15	18	13	11	14	11	17	10	11	15
CACCGTTATACGTGTT	alt_2272_upstream	20	17	11	9	20	8	22	11	16	16
ACGCTTTGCTTAGCAA	alt_2272_upstream	6	11	10	1	14	2	7	6	10	4
AGGGTTGGGTAGCTGC	alt_2272_upstream	11	30	24	17	28	11	28	7	42	21
CATCATGGCTGGTGAC	alt_2272_upstream	20	22	22	21	27	24	32	11	27	17
TGATTGTTTTCGTTTT	alt_2272_upstream	28	35	42	44	44	40	34	34	45	32
CGGGGACCGTATTCCG	alt_2272_upstream	6	7	6	1	11	3	12	5	12	8
GGTGACACAGGAGAAG	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGTTTAGCCACCG	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCGTCTTTTTTGG	alt_2272_upstream	11	20	26	11	18	16	17	17	14	9
CCACAGGCTAAGCACT	alt_2272_upstream	18	23	24	18	32	21	20	19	34	14
TACTAGAATTTTCCGT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CCGAACTCCCTTCTGA	alt_2272_upstream	1	11	6	1	4	3	11	0	12	4
CAAAATTCGTTCCAGT	alt_2272_upstream	24	20	21	24	29	21	30	20	35	14
CTCCGGCCAAATGTGT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GAGGGTATATAGCTTG	alt_2272_upstream	24	36	33	33	39	20	44	20	57	27
AGTACTCGCGTTCTTT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGAACTTGTTGAT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTTCTGTGTTAAT	alt_2272_upstream	24	52	28	33	34	30	43	14	49	17
CGGCAGTAGGTTATTC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGGCAGATATTCT	alt_2272_upstream	21	43	18	29	36	24	47	25	39	21
GAATGCTTGAGATTGC	alt_2272_upstream	11	14	5	15	15	11	20	12	18	18
AATTTGCGTGCCAGTG	alt_2272_upstream	0	0	1	0	0	1	0	0	1	0
ACTTATCGCATGTCAA	alt_2272_upstream	11	17	13	12	14	14	24	20	23	13
CGGCCCCAACACTCTA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GTACTGGTTGGGAACG	alt_2272_upstream	7	21	5	3	8	7	10	7	9	7
AATTTACTTTAATTGG	alt_2272_upstream	1	0	3	0	1	1	3	0	1	1
TCTCTTAGGTACGAAC	alt_2272_upstream	9	12	5	15	8	1	21	11	12	7
AAGAGCGCAGTTCCCT	alt_2272_upstream	6	11	7	8	6	6	15	7	10	4
CCCGGTCGTGAACCTC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAAATTTTTCCGT	alt_2272_upstream	0	2	1	0	0	0	0	0	1	0
TCGAACGGAACACATC	alt_2272_upstream	29	32	27	24	35	21	56	15	44	15
ATTTACCAAAGATCAC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCCATTTCGCTCA	alt_2272_upstream	20	87	16	28	48	15	46	10	43	21
GTCTTAGTGATTAATT	alt_2272_upstream	65	85	82	76	100	49	95	41	94	42
GTCTTGCATTGAGCTT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCAGGTCCGCTGA	alt_2272_upstream	25	31	14	18	21	14	22	12	16	12
CCTATACATATATCAC	alt_2272_upstream	34	64	38	33	54	24	60	29	55	22
TGTCTTCCTGTTTTCT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTCTAGCGGTTTT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCGGGAAACTGGC	alt_2272_upstream	11	13	15	15	13	9	17	10	21	10
TCTATGTGGACGCTGT	alt_2272_upstream	12	21	15	17	18	13	22	17	27	20
TGGATTCCTGCCCGCA	alt_2272_upstream	8	5	5	3	5	2	7	5	8	5
CGATTTCACCCGCGGA	alt_2272_upstream	49	88	75	50	89	50	93	53	105	54
TTGCGTATAGGATTCA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGTGCCCCCTAAA	alt_2272_upstream	21	38	30	28	46	24	38	19	39	23
CGGTCACCCGGTAATC	alt_2272_upstream	10	21	20	7	24	12	33	4	23	2
AGCAGCTCGGGATGGT	alt_2272_upstream	66	104	74	62	87	86	99	73	123	55
TCTGGACTAGATCCGC	ref_2272_upstream	31	28	32	38	39	23	28	22	36	22
AATTAACTTAATTATA	alt_2272_upstream	13	15	8	11	12	6	13	4	15	8
AAGGTACCCCCTACCA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
TGACGCCGGATCTTCG	alt_2272_upstream	9	10	7	9	7	8	9	5	7	6
TACTGACACCAAGACA	alt_2272_upstream	75	131	119	85	105	82	134	90	118	58
TAGCAACTTTCCTCTG	alt_2272_upstream	4	3	0	0	1	4	4	0	1	1
TTACGATGAAACGGAC	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCGCAAGTTGCAA	alt_2272_upstream	9	7	4	6	9	10	15	9	12	6
TACGTCACTATTTTAT	alt_2272_upstream	41	79	84	60	65	59	77	50	73	51
GTTGGAACTTAGCGAC	alt_2272_upstream	61	123	88	64	135	76	116	66	120	52
CGCTTGTCCTCTTTTT	alt_2272_upstream	4	6	1	1	1	0	2	4	5	0
ATGGCTCAATTGGGTA	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GTTATGTTATATACAG	alt_2272_upstream	45	61	45	37	66	40	80	25	58	34
TTTGTCGGGGAACTCA	alt_2272_upstream	10	41	10	11	51	16	54	10	54	7
CTTGCATGTACGATAA	alt_2272_upstream	74	117	92	64	96	52	131	53	108	50
AACGTCACTATTTTAT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGTGAATAATGCCTGT	alt_2272_upstream	42	51	35	32	46	41	50	34	52	28
CTTTTAAGTGTCCTAC	alt_2272_upstream	11	28	23	16	33	13	26	19	34	14
TCCACCTCTTGCCGGC	alt_2272_upstream	67	100	75	48	95	61	109	65	132	60
GACGCACTAACGAGGT	alt_2272_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCACCTATTGCGG	alt_2272_upstream	16	30	14	23	38	21	27	21	43	15
TATGGCGTGAAACAAT	alt_2272_upstream	54	59	51	38	59	40	53	35	81	35
GACAAGAGCTTCACGT	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTTTTCGGTAACT	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTTGATTTCATCC	ref_3187_fdr	60	46	86	63	46	71	41	67	42	65
TTATTTCAAAGCATTA	ref_3187_fdr	11	4	19	14	16	27	14	14	9	11
CGGCATGCGCCATTTG	ref_3187_fdr	216	168	254	187	190	205	198	190	218	186
AATTGTGGATGATTTA	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CATGGGTACAGGTCCT	ref_3187_fdr	62	34	71	53	57	69	28	61	50	71
GAGGCTTACATTCACT	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCTCTTTCGTAGG	ref_3187_fdr	32	36	58	36	29	48	25	35	30	33
AGCTGGTTGCTTTATG	ref_3187_fdr	42	23	67	42	31	41	33	43	19	36
CATTTTTAACTGGATA	ref_3187_fdr	121	91	149	115	85	124	86	116	81	125
AACCTCAGTGAGGTAT	ref_3187_fdr	39	29	62	27	32	30	37	36	41	57
CAACCCTTGCGTCCCG	ref_3187_fdr	51	36	61	44	32	57	36	66	43	61
TCGCTACTCCCGTGCC	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAGGACTAACATT	alt_3187_fdr	27	26	40	27	17	44	20	34	35	22
GCCATCGCTAAAGTCT	ref_3187_fdr	45	49	59	49	40	51	38	54	48	50
AACTCAGTGCAAGACC	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTCTTCAAGTGGG	ref_3187_fdr	124	92	161	103	77	114	82	106	83	117
GCAAGTGGCGTATCAT	ref_3187_fdr	24	18	36	20	14	25	19	32	23	26
TACAGTGGACAACTCC	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTGTTCGAACCGT	ref_3187_fdr	54	25	72	27	45	56	38	60	26	52
TTGTGGGGCGGCGTAA	ref_3187_fdr	65	41	76	44	34	58	35	34	38	46
ACTAGAGCGGTTGTCT	ref_3187_fdr	17	20	20	24	13	19	16	20	15	18
TCGCTGTACGTATCGT	ref_3187_fdr	167	95	191	139	112	158	116	138	107	118
AGTCCTCTAAAAACGG	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGGTAACTGCGTA	ref_3187_fdr	117	64	153	80	73	101	90	112	75	101
ATGGCGCCTTATACTT	ref_3187_fdr	61	42	100	60	46	72	33	48	50	61
AGAAGGAGACGATTTA	ref_3187_fdr	101	73	163	92	68	141	91	106	101	124
TATCTAAGGCACGTTC	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CGATTAGTTATGCGAG	ref_3187_fdr	58	22	59	29	20	41	28	44	22	35
CTCTATCTGCCATGAC	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGTTTGTACTAGA	ref_3187_fdr	65	51	75	69	60	51	61	61	51	68
TAGATCCGTGGCTTTT	ref_3187_fdr	50	39	80	50	49	56	33	50	46	64
TAGTCCCGACGGCTGG	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTCTCATTAATTA	ref_3187_fdr	189	127	266	164	117	158	103	163	123	171
CCTTGGAGGGGCTTAT	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
GCGATGATAAATTGTA	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGGTAACTGGCAT	ref_3187_fdr	5	6	6	8	6	6	4	5	7	10
GTATTGGGCTTATAGT	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TGGTATACGAATGAGA	ref_3187_fdr	64	41	70	38	46	52	46	49	37	57
AATTCGGTTTTCCTGG	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAGACAACTTGAT	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TTTGACTGGACCGCAC	ref_3187_fdr	90	53	77	50	57	53	50	70	63	58
AGCGGCATGGCGTCAA	ref_3187_fdr	29	14	47	21	16	41	18	25	12	30
AATTTATGACCTCCGA	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCAACTCCGAAAG	ref_3187_fdr	18	7	18	26	10	15	8	13	11	17
ATTCATCGCAATGCGT	ref_3187_fdr	32	17	32	24	37	29	30	32	23	28
CCTCGCCCGGTCCGCC	ref_3187_fdr	14	6	22	12	6	18	18	18	19	15
AGTACTGTGTACATCC	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TCATTAATCGAGAAAT	ref_3187_fdr	27	12	26	21	24	12	17	22	12	11
GGTGCACGCACTATTG	ref_3187_fdr	1	0	1	2	1	0	1	0	0	0
TCGGCGGGTATCGCAA	ref_3187_fdr	80	34	64	49	43	63	42	45	49	66
TTTGAACGACTGGCCG	ref_3187_fdr	120	74	123	95	71	100	72	96	66	95
GGAGCGGGCCCTGCGT	ref_3187_fdr	103	51	120	60	56	80	56	83	56	84
CTATCTTAGGTAGGAG	ref_3187_fdr	18	13	24	15	23	18	13	23	21	22
ACCACGCACATGCGCG	ref_3187_fdr	2	10	12	8	4	8	4	12	8	9
GTCGGGGGATAAGCTT	ref_3187_fdr	10	4	10	4	7	12	10	2	8	14
ATCGTTCTCCACAGTG	ref_3187_fdr	94	68	95	70	70	80	56	55	62	83
CTTGAATGCTGCGGCC	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
GCTATGGGGTGTCTAA	ref_3187_fdr	75	53	111	70	68	97	53	88	52	78
TCCGTTTTTTTGGTTC	ref_3187_fdr	173	164	152	116	150	156	168	142	159	138
TTATGGTCGGACTCTG	ref_3187_fdr	31	62	41	25	54	52	66	27	81	25
ATATCAATTGATAATT	ref_3187_fdr	117	83	144	106	72	123	92	101	78	117
GCGTCCGTGTTGTTTT	ref_3187_fdr	93	64	102	66	59	93	64	62	67	103
GCACATGTCCATGAGT	ref_3187_fdr	185	86	212	120	123	159	93	130	107	152
ATCACAGGTGTTACAG	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
TTCACACCTTCCGCAA	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTACGTTCAACG	ref_3187_fdr	87	74	108	87	111	95	87	106	70	83
TAGAAGTCCATTAAAT	ref_3187_fdr	28	26	29	33	23	31	24	19	20	33
TTGGCAGATCAGGACG	ref_3187_fdr	28	11	20	11	12	17	8	9	11	14
GCTCGTCCTTGTTCCA	ref_3187_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGCCGGGATAATG	ref_3187_fdr	34	155	51	45	199	45	171	48	171	37
TGTGATTGTATTTTAC	ref_3187_fdr	20	11	10	10	5	19	9	6	12	8
ATCGGGCCAGTCCCCT	ref_3640_fdr	25	24	34	28	18	21	24	21	27	24
ACTGTTCGGCAGGCAC	ref_3640_fdr	8	0	16	18	12	14	4	14	12	9
CACTTGGTGTAGTAGT	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCTTCTATAGCAC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
GGCCAACGTGACCTGA	ref_3640_fdr	5	2	7	9	6	4	9	14	2	3
TGTTGCGTGTTCTATG	ref_3640_fdr	40	34	60	34	22	35	39	39	39	24
GGTTAGAGCTCTACTC	ref_3640_fdr	13	19	27	28	26	34	17	31	21	21
ACTTTAACCTGCTCCC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTATGGAGACTGA	ref_3640_fdr	22	23	21	19	11	24	26	19	21	24
CCCGAAAGCTACCATC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGACAAATACTTA	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTTAAACACTTCG	ref_3640_fdr	22	17	33	31	13	22	21	25	35	14
ATTGTCTTAAGGTCGG	ref_3640_fdr	115	98	132	102	77	130	105	116	101	103
GCTCCGCGCACGAGAG	ref_3640_fdr	11	16	17	13	6	15	15	10	11	9
CTTAGTCTTTGTGGTA	ref_3640_fdr	42	24	62	40	18	31	21	32	20	33
TACTGGTAGTAGAGTC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
TCAGATGAGTCTAGAC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
TGGGAGTCAGACGTAT	ref_3640_fdr	37	28	44	34	35	41	25	26	30	27
TCTGAACAATGCTTAT	ref_3640_fdr	32	17	38	21	30	21	29	27	24	26
ACCGCATTGTTGTTGG	ref_3640_fdr	53	56	67	55	47	40	62	50	61	49
CCCGGTTCTGTCTAGT	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
ATTGGACAACCCGGAG	ref_3640_fdr	21	17	32	31	23	29	10	25	24	26
AAGGCATGGGCTCCAT	ref_3640_fdr	5	4	7	11	3	8	4	2	7	3
GCTTAGCCTGCCACTA	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTTCCCCGTCAGG	ref_3640_fdr	1	4	0	0	1	1	2	0	8	0
GTCATGATGCATTGGG	ref_3640_fdr	21	12	23	18	25	18	20	22	17	17
CTTTCACTCCTTGTCG	ref_3640_fdr	30	93	26	27	72	17	82	18	82	23
TTCAGATTGTGAAGTT	ref_3640_fdr	101	71	123	99	82	94	100	123	96	105
TCTAATTAAATCATTC	ref_3640_fdr	280	190	356	317	190	293	192	294	178	262
CCTTACGATTTATTGT	ref_3640_fdr	18	16	28	19	12	23	10	14	16	23
CATCGTCTACTTCCTC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
TTCGACTCTCTGTGGA	ref_3640_fdr	68	76	97	76	71	80	58	58	51	75
GGTTAGATCTTTGATA	ref_3640_fdr	23	25	27	27	33	18	23	20	28	23
GCATACTCGCTCGTTG	ref_3640_fdr	424	274	448	398	312	393	300	358	269	366
TACGAACTCAACACAC	ref_3640_fdr	122	97	171	133	95	134	76	144	106	122
CTTTTACCGGCGAATC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
AACGGCTAAGGCACCC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
CAAGCAAGCTGCGCGT	ref_3640_fdr	36	24	36	34	23	26	25	25	24	20
GGTGCAGCGTGACCTA	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCCTACGGTTTCG	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
CCATGTGTCTTAAACC	ref_3640_fdr	2	2	3	1	0	1	0	3	0	4
ATAAGTGAATCGTGCT	ref_3640_fdr	2	4	7	2	5	8	7	8	3	4
CGAAAGAACATAGTTC	ref_3640_fdr	41	20	38	34	25	34	24	31	31	23
TTCGTCAACCCACGGG	ref_3640_fdr	23	18	23	16	11	22	11	15	12	21
GCTCTTCGCTTCAATG	ref_3640_fdr	46	43	74	46	42	59	37	40	32	38
GTCTTATCGACCTAAG	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTACCTAGTTCAC	alt_3640_fdr	2	1	0	1	0	2	1	2	0	0
ATACTTAGCTATTAAT	ref_3640_fdr	35	20	36	26	27	28	24	35	25	33
CTGACAACGAACAGGC	ref_3640_fdr	29	16	35	36	24	36	22	40	31	35
CCAAAATCCCGTATAG	ref_3640_fdr	81	118	131	121	151	87	127	99	126	88
TACGTGACACTAATCG	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
AATGAACTGATTACCA	ref_3640_fdr	30	29	47	36	25	27	34	26	25	28
TGGGTTTCTTATACCA	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
CGTATCATCACACATT	ref_3640_fdr	57	58	66	79	43	59	51	38	47	40
TTGGCGCACTGTATAT	ref_3640_fdr	31	43	69	61	38	50	57	51	45	47
GTTCTTATGTTCGGGG	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTGCGTCCAAAGT	ref_3640_fdr	3	3	7	8	0	6	1	4	6	3
TGGTCGCCTCACTATC	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTAATTAGAGAAT	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
AATGTCCGATCATAGT	ref_3640_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCAACGGCCTGCG	ref_3640_fdr	6	3	7	9	2	9	2	12	2	8
GTGGAATAGTCTTAAG	ref_3640_fdr	57	59	75	81	62	73	59	61	82	59
ACTCGGGAGTAGTCGA	alt_6063_new	67	60	73	69	60	50	64	52	72	48
TAAATCTGGTTTGTAT	alt_6063_new	8	9	11	7	7	3	7	10	2	7
GGTTTCGTTCAAAAAC	alt_6063_new	10	8	15	11	16	10	11	8	12	10
TGTGTGAGATTCAGCT	alt_6063_new	23	37	36	35	18	24	38	23	45	14
CGTGGAATTTTACGGC	alt_6063_new	27	31	37	32	40	37	48	24	25	27
CGTTGATCAAGTGACC	alt_6063_new	130	148	153	132	154	132	123	112	127	120
CCTCTAGTTGTGCGAG	alt_6063_new	169	125	167	143	149	140	160	135	167	110
TTTTGACTTTACTTCA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GCTGCCTTCATGCATG	ref_6063_new	54	52	49	54	57	50	53	52	68	43
ATAAAACAGTTGACAC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TCCTTGGCATCGGAGG	alt_6063_new	30	36	25	28	31	29	37	30	40	24
CGTTCTCCCCTCAATG	alt_6063_new	15	75	22	25	66	16	66	18	88	11
TTTCCTGTTTCGCCGG	alt_6063_new	24	14	24	35	22	15	20	16	17	20
TTAATGCTTAATCACG	alt_6063_new	134	114	139	135	132	124	126	111	158	96
AGGTGCCCGAGTTATG	alt_6063_new	12	8	22	12	16	13	11	12	12	12
GCTAAGTCAGCGCACC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TTTATGTACTGCTATC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
CCGGCGAGTAAATTGC	alt_6063_new	0	2	0	1	0	1	0	0	0	2
AAATTTTCTTTGACTT	alt_6063_new	9	8	10	10	12	8	8	4	7	5
TGCCTCCGGTAGCCCG	alt_6063_new	0	0	0	0	0	0	0	0	0	0
CGTTTTCGTTATTTTA	alt_6063_new	40	41	40	45	41	34	30	37	27	40
GAAGATCACGGTATCT	alt_6063_new	33	25	30	40	22	29	28	25	41	24
CCTCTATTGTAATGTC	alt_6063_new	11	9	12	5	15	5	20	9	11	14
AACTGTAACAAGTTCG	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TTGTTGCCTTCTGTCT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
ATTTTTTCTTTTCACA	alt_6063_new	28	26	37	24	27	32	39	24	39	24
TTCCGTTATTTGCAAA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
ATCCCAATTCATAGGA	alt_6063_new	60	69	97	70	77	67	72	79	80	61
TCTTTGAAATGAGTCT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TCTGTCACTGTATATT	alt_6063_new	24	20	37	26	21	19	28	34	25	25
TCTGATCGTCATGCCA	alt_6063_new	11	3	5	9	9	2	5	7	7	4
TTACAGGACATTGAGT	alt_6063_new	61	64	78	88	58	57	75	52	88	49
TGCCTATGTAACAAAA	alt_6063_new	44	67	66	35	68	44	59	37	69	54
TGGTTGGTTACAGGGG	alt_6063_new	40	29	47	53	40	32	43	32	48	46
CACCTTGTCTAGAACA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
ATGCCACACATATAGG	alt_6063_new	13	6	7	8	6	11	10	13	12	6
TCGCAACCTATTCAAC	alt_6063_new	27	41	39	33	38	25	35	26	49	28
TGTGATCTTTTGTATT	alt_6063_new	16	19	13	23	13	21	10	12	16	16
GTCCGATCCACCGACA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TTTCGTCAAGGCAGCA	ref_6063_new	59	99	96	68	97	61	88	60	89	60
TAATTTCTATATGACT	alt_6063_new	1	0	4	2	1	0	0	1	0	0
GACTTTCGACCCTTTG	alt_6063_new	55	42	52	53	69	39	40	42	53	49
ACCGGTCAGCCTTTGG	alt_6063_new	2	11	3	4	12	3	14	1	16	1
TGCTTTGGAGACCGGG	alt_6063_new	78	97	121	102	144	84	112	91	95	86
CTATTTTGTCATGCTA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TGTTTTCTTCGACATC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
AGTAATATCGTTGACT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
CCGTCAAGGAACATGT	alt_6063_new	8	15	25	17	14	15	19	10	20	10
CGCTAAACGTGGTGTT	alt_6063_new	8	6	17	13	11	9	9	10	8	6
AGCATACCATTAAGTA	alt_6063_new	46	48	38	59	55	38	47	41	59	34
GTAATTTCCAACGGCT	alt_6063_new	19	17	18	18	24	17	23	22	24	20
GTTCTCACTCCGCAAG	alt_6063_new	19	52	21	20	54	23	45	12	39	24
GTCCGCGTTTAAGTCT	alt_6063_new	19	12	13	6	11	12	7	11	18	9
CGCAGGTTATTCCTTC	alt_6063_new	24	8	17	17	18	14	19	14	12	3
TTGCGCCTGTTCTCAA	alt_6063_new	13	24	18	13	14	21	25	13	20	16
GTTCATTTGTGGTCCT	alt_6063_new	29	32	25	49	31	28	29	33	31	31
TCAGTGTGATTAATGT	alt_6063_new	18	18	15	18	17	27	22	14	18	13
AGCTACAGTATACTTA	alt_6063_new	1	4	3	4	7	7	5	3	3	7
GTTTATTTGACACTTC	alt_6063_new	8	6	7	10	8	6	8	7	11	6
ATGGATATGTGATCGC	alt_6063_new	45	37	51	42	37	38	46	39	44	34
AATACTCCCAACAGTC	alt_6063_new	0	0	1	0	0	1	0	0	1	1
GCTAGTCTATGGAAAT	alt_6063_new	12	7	13	13	10	10	18	14	10	8
TACCCCCGATGCGACC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTACGCGCTTC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GGTGGAACGTTCATAT	alt_6063_new	52	62	71	48	47	52	40	53	54	52
TAGCGCGGTCACATGC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GGCTTGCCCTTACCAA	alt_6063_new	40	36	59	25	54	32	36	39	48	30
TTCCGGCATGCCCACC	alt_6063_new	38	36	57	47	43	33	35	40	34	25
GTATGTTCGTATTTAG	alt_6063_new	11	4	2	10	2	3	5	4	7	2
TAGCACATTTGGCGTA	alt_6063_new	22	22	22	17	15	26	21	19	28	18
TCGAGCGGGCTTTAAG	alt_6063_new	2	8	4	5	4	2	8	5	4	5
TTATCGCCATTCTTTT	alt_6063_new	14	32	22	13	17	26	26	21	32	15
CCTTACTGTAGCGTTT	alt_6063_new	24	36	38	39	30	27	35	39	31	18
TGACACTCTATTCTAA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GCCAAGAGCTATGCTT	alt_6063_new	11	27	19	19	27	19	27	13	22	17
GGCTTTGATCTCTTAA	alt_6063_new	37	30	35	25	29	18	19	26	30	29
TCAAGGCTGTGGGCAG	alt_6063_new	59	74	85	72	75	75	73	77	85	65
GGCACCAATACGGGCT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
CCTAGGCAGTGCCTAC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TCACAGCTTGCCCTTT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GGGGCACCAAGCGACC	alt_6063_new	252	284	362	281	264	324	290	264	283	244
GTAGACAATCGTTACA	alt_6063_new	62	86	71	61	63	60	63	54	76	59
TTGTTGCCAACGGGAG	alt_6063_new	31	22	31	31	35	26	22	27	28	27
AGGACCAGGATTTCAA	ref_6063_new	19	40	22	8	26	13	30	12	18	16
GGAACATAAAGGTAGC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TCTCCAGTGATCCAGT	alt_6063_new	9	12	8	11	20	8	22	9	15	6
ATATGACTCCAACTGG	alt_6063_new	9	6	8	5	2	6	10	6	7	13
TATTTAGCATCTTTAC	alt_6063_new	77	100	70	79	76	89	104	66	107	76
CCTGCTATAAGGGGTG	alt_6063_new	4	5	1	3	8	1	10	4	10	1
ATTACCATGCTCGTTT	alt_6063_new	24	30	32	23	25	46	30	18	34	26
ACAGAACTGCTTTATT	alt_6063_new	12	7	12	15	10	9	13	16	15	16
TAAATTTACCATCCGT	alt_6063_new	21	31	26	18	45	26	35	24	36	21
TGGTTCACTAGCGCCG	alt_6063_new	31	31	28	22	48	26	32	31	31	27
TCTCGAATTCGGTAGT	alt_6063_new	48	54	60	40	38	44	49	41	61	39
CGTGCCAGTCTTCATT	alt_6063_new	72	60	69	63	79	48	85	60	56	56
CCGTACAGCAGCTAAT	alt_6063_new	8	7	2	4	6	3	8	2	8	4
CTTCACTATTATCCAC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TGGTGTATTGCTCCTA	alt_6063_new	14	7	10	9	7	4	9	7	19	12
ATTAAGAGGAGTCTCA	alt_6063_new	15	5	12	5	12	12	18	9	13	6
ACGTCCCACCGCAATT	alt_6063_new	16	22	18	20	7	14	26	10	30	21
ATGCCCATCGTTTCAG	alt_6063_new	12	16	13	15	24	13	19	16	20	13
ATATTTCCCAGGAACC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
ATCGCGTGCGTATGCG	alt_6063_new	0	0	0	0	0	0	0	0	0	0
ACCTTAAGGTATATGC	ref_6063_new	27	34	21	25	25	21	21	21	36	18
GTACTTAAAAACATCT	alt_6063_new	11	12	19	22	22	17	18	11	11	15
ATTTGTCTTTAGATAT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TTACAACTCAGGGGCT	alt_6063_new	97	79	120	98	92	87	95	74	92	95
GGACATTCTCAGTCAA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
AACATCCCGGAACTCT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TTTTGGTGCTTCCTGG	alt_6063_new	13	11	18	13	16	10	21	10	5	7
CCTCAAGGTTGGATCT	alt_6063_new	7	10	11	12	13	8	23	11	12	7
GTCTCCATAGGCAGGC	alt_6063_new	38	27	31	34	44	33	39	30	29	31
CGTTTTATCACCTCCT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TTACGATTTATGTCTC	alt_6063_new	7	1	9	8	2	5	4	1	6	2
CGTTTGCTTCGCGGTT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
ATTTGATCGTCATTAA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
AAAGCATGCTTTCGAG	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GCCAACCTTTTTATGT	alt_6063_new	2	1	2	1	0	0	2	0	2	1
CGATGCGGTATAACCA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
ATTGGAACTATTTAAC	alt_6063_new	75	70	99	83	89	89	67	65	72	59
TAAAGTTTTTATCTCC	alt_6063_new	14	7	23	18	13	19	9	13	14	17
CTACGGTTTACATCAA	alt_6063_new	58	40	45	34	40	34	40	33	40	33
TCGTTATCAGTGCCGT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TGGCAAATCGGAACGA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TACTCGACGTCAACTT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GCTGCCAACCATCAGT	alt_6063_new	13	19	21	15	22	15	13	10	16	14
AAATACGAGCGTTTGG	alt_6063_new	76	62	115	78	81	67	75	71	90	60
GAGGCTGACTTTTGTT	alt_6063_new	4	4	8	5	5	2	4	2	6	4
CGTAGTTGTCATTTGC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GGATTGGCCCCCGGAT	alt_6063_new	1	0	0	0	1	0	3	0	1	1
CCTTTTATAAGGTATT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
CCCTTCTGTAGAGGTT	alt_6063_new	12	12	23	17	14	6	11	12	15	13
GAACCTATGAGACTGG	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TGGAGCGTTAGCTCTC	alt_6063_new	0	0	0	0	1	0	2	1	1	0
TCCCCTCTGAATTTCT	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TGTTTCCTCAACGCTG	alt_6063_new	0	0	0	0	0	0	0	0	0	0
TTCTCGCGGGACAGTT	alt_6063_new	8	11	12	5	11	4	11	2	6	7
ATGCATACGTCCACCG	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GCGTCGTCATGTCGAA	alt_6063_new	0	0	0	0	0	0	0	0	0	0
AATTTCTCTCTTTGCC	ref_6063_new	176	213	203	170	207	137	203	160	225	151
AGTCTCTATGGAAGAG	alt_6063_new	119	94	116	100	122	66	126	102	121	84
TGTCCTGTGACGTGTC	alt_6063_new	100	75	98	77	92	60	85	80	83	72
ACTTGCGCACCTTCTT	alt_6063_new	6	8	4	9	5	4	5	4	7	6
TACCTGCTCACTCGCC	alt_6063_new	0	0	0	0	0	0	0	0	0	0
GCTGTCCTGCATCCTC	alt_6063_new	27	25	28	29	24	22	19	16	19	14
ACATATCTTGCGTCCA	alt_6063_new	270	279	349	295	287	304	298	267	311	266
TCGTTACCCTCTTCGT	alt_6063_new	5	7	0	1	3	1	3	1	2	3
TACTTCCATGGGCTGG	alt_2374_reverse	38	42	35	39	50	45	43	39	43	36
GACGTTAAGTTATCAT	alt_2374_reverse	33	30	43	27	38	31	46	29	46	32
TATCATTCAAATATGT	alt_2374_reverse	26	25	28	29	18	25	22	30	33	29
ACTACAAATAAAATCC	alt_2374_reverse	102	130	102	100	109	79	151	99	119	86
TCGTAGCTGATTTTCG	alt_2374_reverse	112	161	135	134	139	106	152	108	151	102
CTGGCCATAATCTGTT	alt_2374_reverse	14	17	21	22	22	15	14	18	37	15
TCTGCGTTGTGTCCCA	alt_2374_reverse	63	80	96	67	78	48	88	48	84	59
TTTCGGGATCGGTTAG	alt_2374_reverse	13	13	15	14	13	18	15	10	15	11
ACATCGTGTTGCTTTT	alt_2374_reverse	3	2	3	1	1	2	1	1	2	0
GCCAACAAGTACCTAA	alt_2374_reverse	21	45	25	30	45	25	34	29	25	36
TAAGAGTTTCACCGCT	alt_2374_reverse	4	4	7	6	2	6	7	2	5	3
CAGGATACTCGACTTC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCACGTCAGGGTG	alt_2374_reverse	7	8	15	8	14	10	10	8	22	13
ATTTATCGAATACCCT	alt_2374_reverse	371	381	423	369	444	310	433	293	443	322
TTCTCAGTCCACCGGG	alt_2374_reverse	7	6	8	9	16	11	9	9	11	4
ATCCATGCCTGCACAT	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTTCCCGTCCCAT	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTTCTACGCATGC	alt_2374_reverse	31	30	31	26	25	21	32	19	18	15
GTCTCAGTTAGTTCAC	alt_2374_reverse	77	98	68	59	111	69	109	77	125	72
CTTCGTCATGTACATA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
CGCTCATGGGACTGGT	alt_2374_reverse	159	251	221	163	247	193	257	176	246	122
TACCGCCGTCACCACC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCATGTGTGTGCA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAGCGTCTGTTTC	alt_2374_reverse	15	22	39	26	21	23	36	22	21	30
TCCTATATCGGGTTAT	alt_2374_reverse	12	25	15	21	11	10	22	13	13	10
GGTGGAGATAGATTTA	alt_2374_reverse	3	4	14	7	4	7	3	7	2	6
CAGGAAAAATCGGACG	alt_2374_reverse	63	61	66	45	70	70	67	49	57	50
AGTTCAGACGCGCTTC	alt_2374_reverse	0	0	0	0	0	0	0	0	1	0
TCTGATGTACACGGGC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGTTCAGGTCATT	alt_2374_reverse	6	10	11	8	11	6	16	6	14	6
TAATTTCCACTGCTCA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTACCTACCGTACACT	alt_2374_reverse	3	6	3	1	12	1	8	2	18	0
TGACCTCGGCATACTT	alt_2374_reverse	40	30	27	47	35	35	55	47	47	23
TCGGCAAATTCTGGAG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGCTAATTTGCCC	alt_2374_reverse	22	25	32	12	43	32	29	21	39	19
CCCAGTGTACACAGGT	alt_2374_reverse	20	26	12	14	26	11	21	16	31	7
ATGTAAGATAGTTGCC	alt_2374_reverse	39	45	36	31	42	26	50	33	43	25
AGACGTGTGACACCAT	alt_2374_reverse	10	9	8	15	11	9	15	12	10	13
GGCCCTTCAGGTCCAA	alt_2374_reverse	2	13	12	8	8	20	12	11	18	13
TAGGGTCTCTTGGTAA	alt_2374_reverse	52	62	54	33	66	58	67	55	87	44
CCAGCTTCCTAAGAGT	alt_2374_reverse	0	0	1	0	0	0	0	0	0	0
GGTGCTGTTCCACAAG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
CCCGAAAGATTTGCCC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCATTTTCCTGTT	alt_2374_reverse	21	25	41	21	19	29	23	25	37	14
TTTTATAGTTGGTCAT	alt_2374_reverse	12	27	11	14	22	16	20	16	28	12
ACATATCGCTCGAATT	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCCCGTGGTTCTT	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTCTTATATACTC	alt_2374_reverse	25	34	32	28	24	18	31	22	23	20
GATATAGTGGTTAGCG	alt_2374_reverse	81	85	103	87	91	77	101	76	98	44
GGCCCTTTGTGTAAAG	alt_2374_reverse	89	122	104	98	119	108	127	81	129	81
CAGAATGACCTCCTCC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGTCTATTTGATA	alt_2374_reverse	27	35	33	23	45	23	50	32	36	26
TAGAATTGGTCTTTCG	alt_2374_reverse	26	38	34	39	44	49	46	37	40	21
CTGATGAGATGACTAC	alt_2374_reverse	15	12	27	13	16	12	5	16	21	12
TCATTGTAACATTCCC	alt_2374_reverse	27	54	17	12	73	11	85	5	82	18
CTCTCTACCTAGTCCT	alt_2374_reverse	14	16	7	14	23	5	24	13	18	9
GTAAGTTCTACCCTAA	alt_2374_reverse	10	12	13	14	15	4	6	13	9	5
TATATTTTGGCTTCAC	alt_2374_reverse	15	24	28	24	28	12	20	23	30	15
ACGTTAGTTTCGGCCC	alt_2374_reverse	14	20	23	19	30	16	27	7	22	15
AGCCTGACTAGGTTAC	alt_2374_reverse	26	46	36	31	48	23	28	25	36	18
TAAAGGTACGACGCCA	alt_2374_reverse	125	162	158	127	163	127	188	111	163	103
GGTGTTCGTTCATACG	alt_2374_reverse	20	17	13	22	30	16	27	14	30	18
CCGTTGGGTTTCGTTG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GCAGGCCGCACAGATT	alt_2374_reverse	40	44	45	36	37	41	50	24	64	22
GCTTGCGAGCGACAAA	alt_2374_reverse	48	80	58	50	46	50	71	46	68	37
ACTTATATTTCGTGGT	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGATTGCTATGCT	alt_2374_reverse	27	31	32	30	31	18	30	25	23	32
GTCTCTGAGCTCAAGA	alt_2374_reverse	54	73	75	54	77	50	74	42	75	50
GTAATTCATGGCTTAG	alt_2374_reverse	24	27	23	14	30	16	24	16	19	18
TCAATTGTCGACGACC	alt_2374_reverse	26	36	45	32	39	25	25	23	50	21
AGTGTTTATCGCTATT	alt_2374_reverse	3	4	2	7	5	7	18	3	5	5
TCACCGAACTTAACGA	alt_2374_reverse	38	42	37	25	32	38	38	28	42	18
GTGTATGTGTTGGAGA	alt_2374_reverse	81	127	136	81	129	92	109	90	138	95
ACATTCCTGGGAGTTC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGTTTTGTAGGCA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
ACCATAAGCAAAACCT	alt_2374_reverse	55	83	55	70	56	74	93	55	82	60
CTTTATCGGTCTATTG	alt_2374_reverse	139	134	170	117	148	118	186	98	188	115
CCCTTCTGGGTCGTTG	alt_2374_reverse	27	38	35	41	41	40	47	40	37	31
TCTGGTGCGCGTTGTA	alt_2374_reverse	12	39	14	27	22	27	32	26	31	21
TTCAGTGGGTGGAATA	alt_2374_reverse	6	7	5	8	4	5	9	4	8	4
TTCCTATGGCTTCTCG	alt_2374_reverse	58	81	62	56	73	38	72	51	81	54
AACTCCGCAGCTTTGT	alt_2374_reverse	17	43	16	14	29	17	25	20	44	26
TGCACTTCACAATCTT	alt_2374_reverse	9	6	7	10	12	7	8	7	7	6
ATCTTTTTAGCTCTAT	alt_2374_reverse	68	82	72	66	77	61	93	59	84	55
GCTCTGAATTACGAGG	alt_2374_reverse	41	47	57	43	57	44	58	36	66	39
GGCCTTTTCGGTCTCC	alt_2374_reverse	13	10	18	18	24	17	19	12	21	7
TTGTGACTATCGAAGC	alt_2374_reverse	12	30	22	20	36	15	28	9	27	23
TCGGATTTTATCACAG	alt_2374_reverse	20	11	22	16	16	26	15	14	17	15
TAATAGAGGCAGTTCG	alt_2374_reverse	16	20	10	10	19	13	17	10	15	14
AACTTTCGTGCCAGAC	alt_2374_reverse	95	127	152	115	157	102	146	106	141	101
CACGCCCAACTTTGTT	alt_2374_reverse	16	29	23	25	28	24	31	18	29	23
CGATTATCAATTTCCA	alt_2374_reverse	26	26	25	30	31	13	37	21	32	21
CAAAAGTCCCTGCTCG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GAGGAGTCATAAGGCC	alt_2374_reverse	12	13	5	12	4	4	10	3	8	8
GCCCATTTTAGAAAGT	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TGAACCAAAGCCCCAG	alt_2374_reverse	6	7	8	5	4	7	4	9	7	3
TGCATATACCTACTTG	alt_2374_reverse	3	11	11	7	10	2	3	6	11	8
GGGTCGCCGATTGTCC	alt_2374_reverse	17	27	25	10	33	28	32	24	34	21
AACATTTGGCAAACAG	alt_2374_reverse	30	25	20	19	16	26	27	21	22	16
GGAACTGGCGCCAAAT	alt_2374_reverse	21	31	36	18	26	28	32	23	29	26
GGTAGTTGAGTTTTCA	alt_2374_reverse	18	17	16	20	26	13	16	15	21	13
CGGTAGTAGTTGGACA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTGTAAGCAGAT	alt_2374_reverse	47	39	44	45	46	36	56	28	42	23
GAGATACCACCTCGGA	alt_2374_reverse	10	10	15	8	13	14	14	5	15	8
GGATTGTGGCGGTAAG	alt_2374_reverse	19	21	23	21	16	20	24	17	33	18
TCTCACGGGTGCCGGG	alt_2374_reverse	28	37	37	35	29	20	37	17	37	28
CGTGTACTCCTCCGGA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
CATAAGTGTTCCCCGC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTTGGTAGGTGG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
ATACTAGTCGACCTTG	alt_2374_reverse	85	138	104	86	132	98	113	109	124	77
CAAGAGACTTGTCCAA	alt_2374_reverse	0	2	2	0	4	2	0	1	4	1
TGCATTGCTCATGCTG	alt_2374_reverse	37	46	47	36	54	25	60	49	65	33
AGTACCTTGTCGTTAA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GAGGATGGTCACGCCC	alt_2374_reverse	3	4	8	5	9	6	10	3	12	0
ATAGCGGGCCACATAA	alt_2374_reverse	10	13	14	6	8	9	14	8	10	10
TTAGAGGGAGATAATT	alt_2374_reverse	27	29	30	19	19	20	25	15	19	22
TACCGTACGAATTCTT	alt_2374_reverse	6	12	18	7	12	16	13	12	14	12
GGGTCTAAATCACGCG	alt_2374_reverse	25	23	25	14	20	20	10	17	16	14
AACGACTTGACTAGGG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GAAATTGAGCCATGGT	alt_2374_reverse	27	32	36	26	33	23	32	24	43	21
TTTTGACTTTATGTCC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
ACGAAACTGAGCCGGC	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
CATGTGTTGTTGAAGT	alt_2374_reverse	31	48	31	29	39	17	32	27	35	21
GCGTACACCGTGGCTT	alt_2374_reverse	29	26	33	19	35	21	25	26	39	24
GTTCCTATTTAGCCTC	alt_2374_reverse	2	7	1	4	9	3	7	6	9	3
GATGTTGTTTTCCCCG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTACTATTTGGGG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGCGCTTAGTGGG	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTACTATGAACGA	alt_2374_reverse	13	13	14	16	16	9	13	18	21	7
TGGATCCTTCATCCTG	alt_2374_reverse	40	44	60	43	65	35	67	48	79	49
TTCGGGTCATATATAA	alt_2374_reverse	0	0	0	0	0	0	0	0	0	0
GATTCCCCTGTCTCGG	alt_5763_new	43	40	34	45	31	24	27	39	35	28
GTCGCTCACCGTCGTT	alt_5763_new	21	19	21	7	20	18	14	18	20	20
ATACAGCCCCGTGAAC	alt_5763_new	0	0	0	0	0	0	0	0	0	0
GCTAACCATTTAACTA	alt_5763_new	22	27	50	29	20	23	22	34	19	21
GCTATCTTGCCTTTGC	alt_5763_new	0	0	0	0	0	0	0	0	0	0
ACTATGGCCACTGATC	ref_5763_new	8	7	13	17	6	14	13	12	7	9
TCTGGCTCCTACATTT	alt_5763_new	66	43	75	73	53	46	47	59	36	43
GGGCCAACAACTTCTT	alt_5763_new	0	0	0	0	0	0	0	0	0	0
TTTTGGAACTGTTTTG	alt_5763_new	27	27	34	41	18	28	24	22	28	14
AAGTTATTTAGGAACT	alt_5763_new	116	125	165	140	116	155	99	118	88	98
TTTCGGATGATTACGT	alt_5763_new	47	17	50	54	27	50	25	44	50	45
ACGTGCATATTGGATA	alt_5763_new	124	110	150	134	108	157	103	100	161	118
GCCATGCTGATTTTTC	alt_5763_new	178	152	236	222	194	185	152	226	167	190
CAGCGAGAATTGCACA	alt_5763_new	14	13	18	11	6	14	26	18	11	19
GTATGTGCCTACGGTC	alt_5763_new	1	2	4	2	1	1	0	1	2	0
TATAATGGCCGGGTAT	alt_5763_new	0	0	0	0	0	0	0	0	0	0
GCGTAAGTTCTGCTAT	alt_5763_new	177	158	235	182	194	162	193	188	172	172
CGGTTTTTCAGCAACG	alt_5763_new	156	122	231	192	127	152	124	173	99	155
ACTTACATGCCTCGGA	alt_5763_new	0	0	0	0	0	0	0	0	0	0
CGCACGTTGAAACATC	alt_5763_new	20	15	18	19	18	20	21	19	11	15
TCTGACAGTGCTTTTC	alt_5763_new	26	12	31	34	27	32	27	29	24	24
ACCCCGCTAGTGGGGT	alt_5763_new	25	29	38	32	28	41	48	29	36	30
TACGCAGTCATGTACG	alt_5763_new	10	11	14	18	4	7	11	5	11	9
AGTCGCTCCTCTTGCA	alt_5763_new	0	0	0	0	0	0	0	0	0	0
GTTGAGCCTATTCGAG	alt_5763_new	20	9	18	20	13	12	10	9	15	9
TAATTCTTCGTAGTCA	alt_5763_new	0	0	1	1	1	3	1	0	0	1
ATGACATGCTTGCTGT	alt_5763_new	9	10	8	8	9	11	11	6	9	14
CATGGCACGTCGTGTT	alt_5763_new	0	0	0	0	0	0	0	0	0	0
CGTCAGCTATTAACTT	alt_5763_new	0	0	0	0	0	0	0	0	0	0
CGCTGTGTTATTAAGT	alt_5763_new	0	0	0	0	0	0	0	0	0	0
ACGTCGTCCCCTTTAA	alt_5763_new	11	8	10	9	9	11	6	7	29	6
ATCGACTCCGCGCGCC	alt_5763_new	0	0	0	0	0	0	0	0	0	0
TTATCCTTGCGCTGAA	alt_5763_new	52	35	50	49	37	39	30	38	28	57
ATGATTCGTTGCACTC	alt_5763_new	0	0	0	0	0	0	0	0	0	0
ATGCAAGATTTGTGGA	alt_5763_new	37	30	57	44	28	34	37	39	25	40
TTTACTGGTCGTCTAT	alt_5763_new	86	104	124	122	91	103	85	112	108	84
GCGTGGGCTCTTCTAC	alt_5763_new	1	0	3	3	1	5	4	1	2	2
GCTCTGTTACTTTTGT	alt_5763_new	6	9	6	8	6	10	6	11	2	8
TCGGTTGCGATCGTCT	alt_5763_new	28	31	22	26	21	16	21	14	22	33
GATGGTGACCGTAGGA	alt_5763_new	17	13	9	9	10	12	15	15	15	5
TTCCGTGTCCTCTCGG	alt_5763_new	0	0	0	0	0	0	0	0	0	0
GAGTATAAACAAAACG	alt_5763_new	51	25	77	65	42	48	31	38	36	59
CGTGGTAGGTTTGGTG	alt_5763_new	12	2	15	10	13	16	9	9	11	10
CGAGCTTAACGGATCG	alt_5763_new	52	39	66	61	46	44	32	58	28	63
GTAATTGTCGTGACGT	alt_5763_new	58	42	68	41	41	49	41	67	46	45
TTTACTGGTCATCTAT	alt_5763_new	0	0	0	0	0	0	0	0	0	0
ATCTTCGTTTAAGAAT	alt_5763_new	16	12	20	18	10	14	12	14	14	12
TCCTGAACGTTGGCCT	alt_5763_new	25	25	47	36	25	38	24	31	33	13
TCTCTTCATGGTTCAG	alt_5763_new	198	123	225	219	162	146	168	205	129	173
TTTGTAACTGCATTTA	alt_5763_new	76	54	75	61	44	60	52	45	59	57
CCAGCGATCCCTAACA	alt_5763_new	0	0	0	0	0	0	0	0	0	0
GTGGCTTGCTATATAC	alt_5763_new	0	0	0	0	0	0	0	0	0	0
TCTAACAGTGCTTTTC	alt_5763_new	0	0	0	0	0	0	0	0	0	0
TTTATTGTTCTCAACG	alt_5763_new	0	0	0	0	0	0	0	0	0	0
CCTTTTGTTGCGTGAA	alt_5763_new	27	24	43	39	19	35	31	36	31	38
GGGCCAACGAGATGGG	alt_5763_new	56	30	45	44	40	51	33	48	36	62
GTTTACGTCGGGGAGC	alt_5763_new	0	0	0	0	0	0	0	0	0	0
CCTTCGGGTGTTACCA	alt_5763_new	72	60	137	88	67	72	69	77	65	72
GGGTTTATTCAAATTA	alt_5763_new	0	0	0	0	0	0	0	0	0	0
CGGTTTTATTAGTAAT	alt_5763_new	38	14	41	32	23	28	30	29	23	34
TTTAACAACTAAGTGC	ref_5623_new	57	91	51	37	103	43	91	48	91	40
TTGGGTCACGAGCCCC	ref_5623_new	14	24	20	17	21	8	24	12	25	10
CTGACTCGCGAATAGC	ref_5623_new	29	44	29	19	26	18	34	21	36	19
GTGCCTAGGATCCCTT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
GGGGCCCGCGGCGGTG	ref_5623_new	22	34	31	25	44	32	42	19	40	27
TTTCGTTATGTTTCGT	ref_5623_new	65	78	79	63	94	63	117	57	114	70
TAGAATTCTACGGTTC	ref_5623_new	11	15	10	9	12	5	12	7	12	3
TTATGATTGAGATCAT	ref_5623_new	32	33	34	27	57	31	42	31	43	19
CACATCCTGGACCGTG	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ACACCGCATGCTAACT	ref_5623_new	16	43	15	25	41	12	53	16	54	24
TACTTAACCATGAAGA	ref_5623_new	48	64	51	33	41	43	51	34	55	29
GTCGACCCGGCCAACA	ref_5623_new	26	28	24	18	40	30	34	24	27	15
AGATCCTATATAAAAG	ref_5623_new	6	9	11	9	12	6	13	6	6	4
ATGAGCCTTTCTGGTA	ref_5623_new	11	23	10	13	19	17	20	7	19	5
TAACGCCGAGGGCTTT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ATAATTCGCATGTGTG	ref_5623_new	11	10	4	4	9	7	4	4	14	5
ATATAGTCCGTTGTAG	ref_5623_new	17	39	27	23	46	24	50	16	39	15
CAACATGTTGAATATC	ref_5623_new	36	35	41	32	40	34	41	37	32	25
TTTTTGTTCTCTTCTA	ref_5623_new	6	6	11	8	9	13	8	7	8	10
CCGGACTTTTGTGCAT	ref_5623_new	7	22	7	6	26	11	35	5	31	9
CCGGGCTGTGTTAAAG	ref_5623_new	0	0	0	0	0	0	0	0	0	0
AGCCCATCCCAGTGGA	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TGATCGAACTCTATAC	ref_5623_new	11	37	17	19	25	9	18	12	26	12
CGGAGCCGCCCCTTCG	ref_5623_new	17	32	18	14	40	18	37	16	36	13
CGATACGGTAGAGAAC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TCGTGGGTAAACAATC	ref_5623_new	85	112	81	56	98	58	132	81	113	47
CGTTCGACTCCTCGAC	ref_5623_new	3	12	4	5	12	2	6	4	7	1
TTTCTTCCAGGCAACT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
CTTTTCATCTTTCTTT	ref_5623_new	20	24	26	18	23	22	32	12	41	3
TAATGTGGTATTTAGT	ref_5623_new	31	49	56	43	65	45	55	35	70	28
CGCAGTAAATCAAGGC	ref_5623_new	29	48	46	34	41	47	50	38	57	40
CTTGTGTCCCGTCTAG	ref_5623_new	0	5	1	1	2	0	6	2	4	0
GACCGGTCGGGTCAAG	ref_5623_new	18	52	28	30	52	21	42	16	44	8
TCGTACGGCCAAGCTC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ACGCTCCGGATATTTG	ref_5623_new	17	30	16	13	21	17	25	14	27	18
AGAACTATCCTGGGCC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ATAACGTGTGCCCTTA	ref_5623_new	69	75	70	62	90	37	97	46	105	41
ATCTTTTCTTTGCACA	ref_5623_new	12	12	8	15	23	14	16	10	12	4
ATTGGAGATCTGTTCT	ref_5623_new	3	8	2	3	8	5	4	6	10	2
GCGAGTGATCGCATTC	ref_5623_new	34	78	47	46	61	34	61	33	77	38
GAGCTGACGTCGTAAA	ref_5623_new	5	14	11	8	11	11	10	7	18	6
TATTCCCGGTAACTGA	ref_5623_new	8	24	10	14	14	12	17	7	15	10
TCGCATGTTTACCTCG	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ACCGCGTCGGTGGACA	ref_5623_new	7	10	14	9	21	10	23	11	24	5
GCTGCAATCCCAACCG	ref_5623_new	0	0	0	0	0	0	0	0	0	0
CGAACATTGAGTCATA	ref_5623_new	12	15	14	5	19	18	18	8	9	9
CGCCGGCATCACGTTT	ref_5623_new	4	9	11	7	8	7	18	9	12	2
CGAGACGGATTCTCAT	ref_5623_new	18	31	31	29	38	28	45	16	37	22
CATCCCACTCGCGAAC	ref_5623_new	54	87	61	46	92	37	91	38	99	37
ACTTCCTTTCGTTACA	ref_5623_new	5	9	11	4	7	6	15	6	14	8
TAGATTTGTGTCGGCC	ref_5623_new	35	42	36	32	61	18	54	46	58	27
GTCTTCTTCGGATGTG	ref_5623_new	36	54	53	35	65	28	47	29	54	31
CCCTCAGTCGTTTTAA	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TTATCGTGCCGAGAAA	ref_5623_new	62	104	72	58	99	58	94	61	82	60
TACAGAACAAGTTTTT	ref_5623_new	9	14	9	9	17	6	15	15	18	5
GCCATTTGCTGTACGT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TTAGTTGGCAGCATTG	ref_5623_new	34	52	37	20	71	37	44	30	41	20
TTTAGGTGCAGTTCAA	ref_5623_new	2	2	4	0	4	5	6	3	2	2
AATCAACGCATGCGGG	ref_5623_new	28	49	35	34	52	44	53	28	62	30
TGTCTATTCATCTATA	ref_5623_new	17	24	19	16	10	20	19	16	17	8
CTTAATGTGTCCCCCT	ref_5623_new	10	14	12	6	21	15	15	7	14	4
AATGTTATAAATGCCT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ACCATTCGTTGGTGTC	ref_5623_new	7	21	11	9	18	10	16	3	18	4
GCTTCATCTCGCTGTG	ref_5623_new	34	43	30	34	55	48	49	37	33	30
CTCGGCTATTAAGGCT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
GACTAGGGTACCAGAT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
GAGCCCTGTCTTAAGA	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TGCTGTGCTGACGACT	ref_5623_new	17	24	33	18	31	18	36	18	43	15
CTTTAGCGCACGAGTC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
GACTTCGGACGTTCTC	ref_5623_new	3	7	4	3	13	6	12	2	11	12
TTGGCATTTTCTGTCG	ref_5623_new	41	66	58	32	62	47	76	31	76	50
TCTTCTTGCTACAAGT	ref_5623_new	6	6	6	0	4	2	5	0	7	2
CCGCCGTGAGCACTTT	ref_5623_new	63	64	70	46	42	57	83	35	67	45
TTCTACTTTTGCTGAG	ref_5623_new	46	77	55	53	89	33	108	42	82	38
GAGTTCTGAATTTGAT	ref_5623_new	2	6	3	5	7	3	7	6	2	2
AACTGAGGGACATTTT	ref_5623_new	3	15	1	5	6	3	4	4	4	6
ACCTATTCAACTTCTA	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TGGGGACGTTCAGTTT	ref_5623_new	34	41	36	26	44	22	45	19	42	22
ACGAGGCTCTACTGCG	ref_5623_new	17	25	26	30	30	24	31	20	35	23
ACCTCCATAAACGTAT	ref_5623_new	15	33	9	18	20	10	34	9	24	13
TCCCTCCCTTATCGCC	ref_5623_new	2	3	2	2	7	2	4	0	1	2
AACTTGTCTCTGTCAC	ref_5623_new	20	34	20	22	30	21	32	13	35	24
GCAGGCATTTATCTGT	ref_5623_new	2	0	1	1	0	2	0	0	4	1
CTCCTCGTAAATTGTA	ref_5623_new	4	5	1	2	3	11	6	4	6	2
ATCCAGGCCATGGAGC	ref_5623_new	125	193	187	116	233	117	214	145	201	111
CGACCGTGGGGGGGCA	ref_5623_new	22	40	49	24	54	37	52	31	38	25
GTCGCAGACTGGGCGC	ref_5623_new	2	9	2	3	9	0	14	2	14	1
TCAGGGGTACTGAAAA	ref_5623_new	22	29	41	27	40	30	44	18	31	13
TTTTTTGTGCATCTTA	ref_5623_new	8	19	16	16	22	13	14	14	27	6
CGTGTGGTTGTATTAT	ref_5623_new	32	57	32	32	65	24	50	31	74	28
TTCGCACCAGAGTGGC	ref_5623_new	1	0	1	0	1	1	3	3	2	1
TTCATCGACGTCGACT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
CTGTCTTGCTTGAGGT	ref_5623_new	55	101	91	57	102	49	107	42	110	44
TTCTAGTCTGAGCGCC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ACTGTTGACATCTCCG	ref_5623_new	118	173	127	138	175	96	154	105	168	116
AATTGATATTTCGGTC	ref_5623_new	38	66	49	45	78	25	63	47	80	43
CGAGGGTGTCCGCGCG	ref_5623_new	18	44	35	32	37	23	24	20	48	24
TCCTGAGACTAAGGCC	ref_5623_new	52	80	55	43	90	47	69	45	79	43
GACCGTCCAATGATTA	ref_5623_new	18	22	16	11	23	9	23	15	26	10
CATGGACACTTAACCT	ref_5623_new	9	15	3	6	14	12	19	7	16	9
CAGTAACCTCACCTCA	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TGGTGTAACGTCTTGA	ref_5623_new	0	0	0	0	0	0	0	0	0	0
TTCGCCCCATTGTCTA	ref_5623_new	3	12	8	8	3	4	4	2	6	8
GTTTCCGGATAAGCGC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
CACGCTCGCATCCATC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
GTTGTGAGACGTAGTG	ref_5623_new	69	157	117	76	133	68	150	79	151	72
GCATGGACCGTTGATT	ref_5623_new	69	139	75	68	127	66	116	78	127	67
TGCTTTCAACGAAAGG	ref_5623_new	0	0	0	0	0	0	0	0	0	0
GGGTAAACCACCCCGT	ref_5623_new	0	0	0	0	0	0	0	0	0	0
GACATGGCATTAGCAC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
ATCCTGGATTACAGTA	ref_5623_new	29	57	47	24	59	31	48	27	42	17
CACGCAAGGCCTGCGT	ref_5623_new	0	0	1	2	2	0	1	0	0	1
TTCGATTGTTTATGTA	ref_5623_new	8	9	9	12	14	11	22	6	12	5
TGAGCAACTTTCGTCG	ref_5623_new	69	104	85	77	118	79	130	78	140	64
GGACGGCGTACAACTT	ref_5623_new	6	11	13	14	15	9	17	10	24	8
CTGCCCTTCCGCGTCT	ref_5623_new	38	55	32	28	47	26	50	26	37	22
TCTTCCGTGCCGGTGC	ref_5623_new	0	0	0	0	0	0	0	0	0	0
CTTTGTGGCCTTGTTC	ref_5623_new	5	9	9	5	10	5	11	8	12	3
AAATTCCTGCACGTGT	alt_4994_upstream	168	99	197	147	92	160	112	145	93	117
CCGTTGAACGCTGGTA	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCTACGCGGCGGAATC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTGTGACTTTTGA	alt_4994_upstream	62	42	67	61	38	68	43	65	41	56
CCTCACCCGTCGTCCT	alt_4994_upstream	4	48	4	13	52	3	46	4	59	6
TATGAACAGTTGCCGA	alt_4994_upstream	44	29	63	49	23	48	25	61	31	39
TCGCGTTGGGATTATT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATGCAAGCCCTGAGTG	alt_4994_upstream	18	10	13	17	6	12	7	15	9	10
CTATCGCAACATTCCT	alt_4994_upstream	29	17	39	32	11	24	14	27	12	26
GACGTGCGGAAAGCAG	alt_4994_upstream	45	20	48	36	26	41	25	32	19	18
ATTTCGAGGAGGAACG	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTTTGGTATGTCT	alt_4994_upstream	0	1	4	2	0	0	0	0	1	0
TCTCCGAGGAAGCTTT	alt_4994_upstream	78	34	77	76	51	63	41	63	39	78
TGCTAAGTTTGGTATC	alt_4994_upstream	22	13	16	35	5	19	5	19	5	21
CCGGCGACTTTCCTAC	alt_4994_upstream	96	104	121	94	101	93	94	72	107	80
CCGCGACTGCAACGAT	alt_4994_upstream	12	8	15	12	22	23	26	11	15	11
AGTTCCAGTAAGGTTC	alt_4994_upstream	7	1	6	4	2	5	2	3	4	3
CCGAGAACGCAGCAAA	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GTGCACCGATAGGGAA	alt_4994_upstream	121	83	122	87	87	107	68	117	63	115
TTGAATATTTGCAATA	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
CCATGGTGAGGTGCCT	alt_4994_upstream	208	129	276	223	114	200	132	175	144	175
TTCACGGCGAAGAAGC	alt_4994_upstream	124	68	131	128	61	119	70	105	72	99
TTGGCATCACGGGGTC	alt_4994_upstream	71	45	81	78	34	66	56	72	42	71
GGTGCAATTAATTACT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GTCCCTGTGCCCTAGC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTAGAACACTACA	alt_4994_upstream	16	8	21	25	9	11	8	32	9	18
CATTGGGGTGGACGGG	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
AAATCCTGGCGAGTGA	alt_4994_upstream	6	2	3	4	3	2	0	8	2	1
CAACCGATTCGGATTT	alt_4994_upstream	20	26	35	34	26	23	34	21	22	29
TTATTTGCGATTGCTA	alt_4994_upstream	39	19	53	33	19	53	23	25	34	20
TGAGGTTTTAGAGAAT	alt_4994_upstream	76	41	77	63	39	81	56	63	61	60
CTGCCAGTAAAGCGTC	alt_4994_upstream	131	134	173	142	106	135	135	138	115	131
CCTGTCACTGCCTATG	alt_4994_upstream	91	118	124	86	90	77	117	71	113	72
AACTTCCTTATAGAGT	alt_4994_upstream	248	130	281	219	166	222	180	202	151	199
GTGCGACAAATCTATA	alt_4994_upstream	14	5	18	15	6	16	13	15	7	8
CAGAGGTTCCTGTGGT	alt_4994_upstream	46	41	45	45	40	59	40	77	27	29
ATTTGAAACTCGGGAT	alt_4994_upstream	83	39	87	66	35	72	53	71	57	72
ACCCTGGCTGGCCGTG	alt_4994_upstream	42	15	48	52	27	51	25	41	36	34
CATGCCGGACTCCCGC	alt_4994_upstream	13	8	22	15	10	24	14	24	12	19
CTTCATGCATTTTGGT	alt_4994_upstream	85	45	107	78	55	79	50	88	59	81
TCAAGTCTCTAGTCCA	alt_4994_upstream	54	42	69	76	56	57	44	50	59	47
CATCGCACGTGACATC	alt_4994_upstream	40	18	36	29	28	29	16	23	23	22
TTAGCAAAACCGGCCA	alt_4994_upstream	20	13	18	26	13	19	6	32	12	18
CGTGAGGCAACTAAGT	alt_4994_upstream	109	57	151	128	66	102	76	119	68	100
AGGGTGTGTCATTTCG	alt_4994_upstream	153	90	200	185	92	172	116	155	117	149
GCCTCTCGTTGCTTAT	alt_4994_upstream	42	23	55	53	44	52	19	46	20	27
ATACCTGCTTAAAGAT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTCATCGTATAACTGT	alt_4994_upstream	4	0	8	3	3	3	1	6	3	2
GTTTTTGATGATTGGT	alt_4994_upstream	18	13	13	15	13	18	6	14	6	19
CTTGTAGCCGAGATGA	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTTATTTCGTCTGGCT	alt_4994_upstream	73	46	98	83	53	74	46	72	51	84
TCTTAGCTCTACTATT	alt_4994_upstream	9	11	23	10	8	14	13	10	9	12
ATGATCCGCTGGGGTA	alt_4994_upstream	16	4	8	8	8	7	1	11	4	7
GCCGGTCGTAGTGTGC	alt_4994_upstream	12	36	16	8	21	13	21	15	22	10
CCGGAAATAAATGTAG	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATAAGGATTGTTACTA	alt_4994_upstream	224	134	275	184	109	215	123	203	175	158
TTTGGTTCTTAACTAT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATCCAAACTTCACACT	alt_4994_upstream	18	12	30	20	11	20	8	24	11	16
CTTATGTCACTCCTGA	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAGCTCACTCCTT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTCGTCCAATCTC	alt_4994_upstream	14	12	26	21	16	28	13	19	19	24
CGATTGCCAGGATAAT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTAACTAGCCTCC	alt_4994_upstream	19	13	23	19	21	24	21	7	22	15
GGAGTACTACACGCCC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGTAATTTTATT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTAGGAGTATTTT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAGGTAAAGTCTG	alt_4994_upstream	25	8	11	9	10	23	9	18	17	19
TCGTACTCTCGAGGTG	alt_4994_upstream	211	111	238	177	99	183	133	150	134	139
GGAGCTAAGGACAATT	alt_4994_upstream	13	11	26	19	9	14	8	19	14	8
TCAACAACCGAAATAT	alt_4994_upstream	24	14	25	23	13	22	14	26	17	23
GATTTGAGGACCCCAC	alt_4994_upstream	63	36	61	65	30	46	28	51	31	54
CACGGGTCGTATTTCG	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCGGAAGGGTTCACGT	alt_4994_upstream	41	26	53	47	27	39	29	41	41	35
TAACGCATCTAAGGTG	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TCACTTGGTCGCACGC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCATATATTTCCAATG	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCAGGTCACTCTC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
AGTAACAGACGCAGAT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TATCCATTCTCAATGC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ACAATGATTGAGCATC	alt_4994_upstream	124	81	147	117	66	102	92	108	84	126
TCGTGAAACCGCTAGA	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATCATGGGGCCAATCT	alt_4994_upstream	27	29	43	39	22	22	27	23	25	23
AGGCATGGCTATGGAC	alt_4994_upstream	155	102	227	178	109	149	122	176	105	137
TCGGTTTCGCTGCACT	alt_4994_upstream	10	4	12	13	13	10	11	8	16	12
TGTTTACGGGCCCGTT	alt_4994_upstream	83	51	123	118	68	100	48	76	72	113
CCTTGTATCAATAATG	alt_4994_upstream	55	27	62	58	30	38	34	47	34	40
TCTTGTTTCATGCGGA	alt_4994_upstream	14	13	19	12	11	14	11	19	12	21
TCTTGGCATAGCCAGT	alt_4994_upstream	52	68	74	50	51	51	47	61	57	62
TTTTACGCGGTTATGT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATCTAACTTTTCCTAC	alt_4994_upstream	33	19	27	32	16	28	14	24	23	34
CCTGTGTAAGGCCCCT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTCGTGCCACGAT	alt_4994_upstream	3	5	4	5	9	4	7	2	9	6
ATTCGGGCCACCGTTT	alt_4994_upstream	2	6	7	8	10	9	10	19	6	10
TCCAAGCTACCGAAGT	alt_4994_upstream	51	18	50	40	26	40	31	41	26	36
CATTCTACCTCACTTA	alt_4994_upstream	123	100	186	176	79	121	80	137	79	127
CGGATTTCTCGTGTAC	alt_4994_upstream	13	20	23	14	5	27	16	24	13	26
TTGTCGTTGGTCTATC	alt_4994_upstream	38	37	63	32	29	47	26	44	33	35
TCGATTATTCACGGTC	alt_4994_upstream	168	94	191	174	90	150	88	154	104	142
AAAGCCTATTCTTTTG	alt_4994_upstream	16	10	16	19	6	32	20	16	18	28
TCTTCGCGATTTCGCG	alt_4994_upstream	75	49	72	55	54	67	55	60	39	53
TTTGGCAGGTGGGTGC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTCGTTTGTTTGC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTGAATTCGCGC	alt_4994_upstream	21	9	7	15	10	16	13	11	12	14
TTGAACAGTGCGATGG	alt_4994_upstream	212	153	247	224	121	235	134	213	157	174
ACGCTTTAGCTAAGTC	alt_4994_upstream	16	6	10	6	8	10	7	12	9	9
GAAGCATATCGTTTTC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGCTGCGTACACT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTAATCCCGCCCAGCG	alt_4994_upstream	118	79	174	130	101	148	92	142	95	140
TGAACTATCCTTTCTG	alt_4994_upstream	38	30	70	50	18	55	28	47	19	39
TGAGTAACATTACAGT	alt_4994_upstream	80	46	105	62	46	71	57	66	50	73
GACGATCTGGGTACAC	alt_4994_upstream	182	171	220	174	189	166	191	165	190	155
CCTTTTTAGATTAATT	alt_4994_upstream	25	18	34	14	15	16	12	18	19	21
CATGGTATTTCTTACT	alt_4994_upstream	21	9	24	18	9	14	15	22	16	26
CGCAATCTGAACAGTG	alt_4994_upstream	68	48	71	61	52	70	37	58	59	65
GATCAAGTCAACTTCC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATACCGAACTCGCCAT	alt_4994_upstream	10	3	7	5	8	5	5	6	8	7
ATCGTACTGACTCCTC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCGTGGTCAGCCT	alt_4994_upstream	21	17	28	29	17	33	13	29	20	26
ATTATCATCTTATGAC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GACCCTTCCCGTACAG	alt_4994_upstream	8	1	7	4	3	4	3	2	5	5
GAATTCCTGTTAGCTT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
CGGATTTAAAACCATA	alt_4994_upstream	150	145	210	161	109	162	135	152	138	151
CGCCATTCCAAGGCTA	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
ACACGCGCAAGGGTGT	alt_4994_upstream	32	25	36	27	18	35	14	23	29	20
CTGCTTACAACGTCTA	alt_4994_upstream	1	5	2	10	7	5	6	6	3	4
TATTTCCCCCCTACGG	alt_4994_upstream	79	51	92	76	46	75	46	76	58	62
CCAGGTCGGCCAGTCG	ref_4994_upstream	26	33	18	16	27	17	25	14	31	21
GTTCGAGAGGTGACGG	alt_4994_upstream	46	15	46	27	20	31	30	38	21	37
TCGTGAGAGATTTTAG	alt_4994_upstream	53	38	85	64	26	59	40	34	38	55
GTCTAATTTAGCCTTT	alt_4994_upstream	30	24	45	31	22	28	23	33	38	35
GTGGACCGCATGTCAT	alt_4994_upstream	50	25	63	38	29	36	24	41	23	30
GTATGTAGAGCCGCAT	alt_4994_upstream	33	29	77	57	24	60	34	59	43	59
GATGCCTAGCTTGCTT	alt_4994_upstream	5	0	14	11	6	5	7	7	5	4
CTTATTTTGGATAATG	alt_4994_upstream	138	76	166	147	94	128	77	142	80	118
TCGCAGCGTTTGTTTA	alt_4994_upstream	36	21	57	53	17	36	28	32	22	36
TCGTCTAGGCGAGCAT	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
GACATTCCATTTTCGC	alt_4994_upstream	0	0	0	0	0	0	0	0	0	0
TGTGATGATATATCCG	alt_4994_upstream	20	7	30	26	20	33	18	22	17	27
AGGATAATTCTCCACC	alt_4994_upstream	23	9	23	20	12	25	8	15	9	16
CGTACTGAGGGCAATC	alt_4994_upstream	15	7	24	15	9	11	9	19	12	13
CAGTTCGACAACGAGT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
CGAGGGTTGCCGTCAC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GCAATTTGTCCGCTTC	ref_3478_RC	135	86	159	147	95	132	87	118	127	120
ATCGGGAGATGGCCAT	ref_3478_RC	124	98	147	125	94	122	79	113	99	98
TAGGTAATTTCTTCTG	ref_3478_RC	18	6	16	20	11	16	15	10	11	16
TTCCGCCCGGGTGCAT	ref_3478_RC	51	36	69	62	52	59	54	78	45	74
CTCTTCACTCTTTACA	ref_3478_RC	145	110	175	164	119	151	123	133	108	112
TATTCGCGATCCGTAA	ref_3478_RC	11	13	24	24	10	15	8	17	8	11
TCGTGACGGTTAGTTT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TGCTGACCTGGCTGTG	ref_3478_RC	53	33	48	54	25	35	37	43	31	43
AGGGTAGTCAATATCG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
ACAAACCCAATTCCGT	ref_3478_RC	42	30	57	70	37	56	29	62	46	37
TCTATGAGCGGCTTCT	ref_3478_RC	19	11	13	16	9	14	7	13	9	22
TAGATGGCTGATCCCA	ref_3478_RC	20	10	14	11	4	17	11	21	16	14
AGCATGCACACTACAG	ref_3478_RC	80	68	121	104	77	86	90	90	79	75
CTTACCGCCATCTGTT	ref_3478_RC	2	1	2	2	0	1	3	2	3	2
CCTTTCTTGCCGGGTA	ref_3478_RC	60	54	89	59	58	70	60	77	54	59
GACTTCGTGTTTGCCA	ref_3478_RC	44	54	83	65	48	52	46	59	48	70
TATGTCCAGCATAGCT	ref_3478_RC	11	6	24	15	4	15	7	11	7	19
AGGTACTTTATATTCA	ref_3478_RC	36	28	35	56	27	42	29	46	32	33
GGTTGGAAGTTGATCG	ref_3478_RC	18	9	18	11	8	12	8	11	13	11
AGCTTGGTTGTGGTGA	ref_3478_RC	71	72	117	85	71	66	76	76	77	71
CTTCAGCCATTGTCCT	ref_3478_RC	85	64	127	101	78	81	54	120	79	75
GTGTTGGTTTCTCTGC	ref_3478_RC	48	32	74	50	39	58	40	50	42	64
GTATATCGTTAGGATA	ref_3478_RC	102	59	119	133	64	99	66	75	80	80
CGGGAAAAATCTGAAC	ref_3478_RC	41	25	49	61	30	37	38	36	21	39
CCGCTCAGGCTCTGGT	ref_3478_RC	15	18	25	26	13	14	15	24	19	26
CAGAACGTTCGTTAAG	ref_3478_RC	169	161	197	181	140	153	135	161	157	189
TCCAGCTGTCTCGGGG	ref_3478_RC	184	192	246	196	137	179	159	195	177	170
ATGAACTCATTCGCAA	ref_3478_RC	35	25	23	18	15	20	11	28	19	24
AATCTCATACAGTACC	ref_3478_RC	26	15	31	26	22	20	21	17	18	23
CATTGCACGTATGTGC	ref_3478_RC	28	30	52	46	27	30	31	30	31	21
GTAACGGTTGCATTAG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
AATAGGGATTGCATGA	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TCAACCCAGTTTCGCT	ref_3478_RC	67	45	73	77	38	59	36	60	51	53
CTGGAATATCGGACAC	ref_3478_RC	17	15	20	14	9	13	7	13	15	15
CTTCCGATATCAGACG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GATAGTACCGTCGTGG	ref_3478_RC	21	17	29	30	30	16	25	26	29	9
ATACAACGAATTGCGC	ref_3478_RC	84	62	120	105	63	87	75	85	71	74
CTCTGGGCCACGACGG	ref_3478_RC	59	70	99	95	60	64	62	75	77	70
AGTTAGGGTTTAGTGT	ref_3478_RC	31	19	38	28	21	22	19	25	15	24
TATGGGTGGTAGTGTC	ref_3478_RC	38	32	52	51	26	45	37	43	40	44
CAACCCGTTATAATGG	ref_3478_RC	27	43	32	40	49	28	54	32	55	32
ATCAGAATTTGTTTTC	ref_3478_RC	264	153	262	289	150	242	181	231	181	220
TCCTACCTCTCTTAGT	ref_3478_RC	24	12	17	26	15	21	22	17	22	23
AGAACGCTAAAGATTA	ref_3478_RC	54	42	70	41	31	56	44	59	44	62
GCGTCACGAGTTCCTT	ref_3478_RC	48	39	54	46	29	46	33	36	28	29
CCCTCTCCTTCTGACA	ref_3478_RC	20	16	19	10	27	11	15	20	14	15
TAAGTATCTATATTCA	ref_3478_RC	11	7	9	11	14	6	7	4	15	3
CTCTTGACAGTGAGAC	ref_3478_RC	13	18	16	16	9	16	9	13	17	18
CAGTGCATCGCGTTAT	ref_3478_RC	34	18	30	35	17	26	20	15	20	13
AGTTGGTACAATTGCC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TTTTGGGAACGATCTT	ref_3478_RC	65	50	98	81	65	73	68	85	77	87
TCCTCTCCTGGAAAGT	ref_3478_RC	30	19	51	30	20	35	24	27	24	26
CCCCCACGGATTAACT	ref_3478_RC	1	1	2	0	2	2	0	6	1	5
ATCTAAGCTCAGTCAA	ref_3478_RC	60	33	65	65	53	70	64	56	61	56
TTCGTGTTCTGCGGAA	ref_3478_RC	53	44	80	70	43	64	50	75	43	51
GGAAAGTGTAGACCTC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GTTAATTTTGGCCCAG	ref_3478_RC	103	78	133	121	78	122	85	90	77	93
TAGCGGCGAGTTAGGC	alt_3478_RC	61	53	85	86	62	66	47	62	52	57
TGGACGATTTATGATT	ref_3478_RC	67	78	91	70	55	92	57	97	58	58
AGAGCAAAGATTAGTA	ref_3478_RC	61	36	60	67	40	64	43	47	45	62
TATCGACTACGTCGTC	ref_3478_RC	31	16	33	33	17	34	21	22	14	29
TTGGATGAGGCGGTGC	ref_3478_RC	80	67	85	78	43	90	59	100	51	82
GAGTATTTATCGTAGG	ref_3478_RC	62	26	78	62	40	58	63	69	44	50
GGTCTGTTCTTAAGTT	ref_3478_RC	61	50	73	71	53	57	72	63	39	69
GACCGGATTCGGATTG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
CGGATTTCAGCGAGTG	ref_3478_RC	35	31	51	49	25	52	25	41	25	34
CAGAGGTGTAGCGATG	ref_3478_RC	297	186	311	273	157	265	182	251	219	235
ACTAGTTGCTCAAATT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TCACCATGTGGGCGCG	ref_3478_RC	105	73	120	92	89	102	92	79	79	88
TCACGCGCCTCTAGCA	ref_3478_RC	48	19	44	43	26	44	34	51	33	34
ACATTCCACGGCAGTG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TTTCCACATCAACCAC	ref_3478_RC	7	5	11	6	2	9	10	4	8	9
ATCCTGATAACGGGCC	ref_3478_RC	238	168	314	253	191	255	165	229	198	225
CATTATAAAATTCAGC	ref_3478_RC	26	20	30	25	14	19	18	32	19	26
ACTTCTCCTGGCATAC	ref_3478_RC	63	40	76	67	40	45	36	61	44	59
CACACAAGGGTTAGCG	ref_3478_RC	12	15	20	19	17	14	7	27	11	8
GTCAGCCAATGGTATA	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
CATTGCACTTGGCAGA	ref_3478_RC	24	30	30	36	19	19	14	35	21	22
CGATCTGTGATCATGC	ref_3478_RC	6	0	7	7	4	8	7	4	2	3
GACGCGAACTGCTAAA	ref_3478_RC	28	27	30	34	18	47	20	27	19	20
GTCCATGATTTTTACC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TGTCGCGCTTTGCTAC	ref_3478_RC	161	126	176	169	90	133	120	130	126	135
GTCCATGGCCTGAGGG	ref_3478_RC	26	16	26	30	7	26	16	19	12	24
GCCTCGTAGCAAGGGC	ref_3478_RC	18	14	33	40	13	39	21	30	16	35
GGGCTAAAATATCGTT	ref_3478_RC	91	72	106	96	85	96	54	79	74	96
TCGCTCATCCGTCCGT	ref_3478_RC	39	24	35	29	24	41	31	39	24	36
TTTTAAGCTATTGACA	ref_3478_RC	244	184	314	269	186	270	197	262	210	228
GGAATGCTAGGGCTGT	ref_3478_RC	82	61	126	106	72	86	69	86	74	90
TTACTACTCTATAGGA	ref_3478_RC	339	221	378	348	206	279	239	285	236	259
TTGTGGTTGTGTACTT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TCTCGAAACTCACTCT	ref_3478_RC	21	11	10	19	5	11	17	12	12	22
CGCTTAGATTTGTGCT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GTGGTAATGAGCCCAT	ref_3478_RC	23	14	17	15	16	16	14	14	12	23
GTTCTAGGCCCCCCTT	ref_3478_RC	65	52	64	46	56	42	34	52	64	43
TTTGTCTTGGTTTTGC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TCTTGTTAGGAGATAT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GAGAGTATGTTCGCAA	ref_3478_RC	50	19	40	40	22	41	31	38	43	47
CAATTTCCGATTCTTA	alt_3478_RC	15	15	15	20	6	10	9	14	10	6
GAAGGGTCTTGTTGTC	ref_3478_RC	110	63	150	125	88	121	62	93	91	93
CGGATATATGTGGGGT	ref_3478_RC	1	3	7	0	2	2	3	6	4	4
GGCCCCCCGATCTCGG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
AGTATCTAGGTATTAT	ref_3478_RC	15	9	15	24	9	23	11	11	9	11
AGAGACATCCTGCATG	ref_3478_RC	51	34	48	57	27	43	32	37	24	33
CTACCTTCCGCATATT	ref_3478_RC	22	8	12	24	14	14	9	11	18	15
ATCTTGATGGTTTGGC	ref_3478_RC	236	147	292	269	124	220	134	234	180	207
GCCCTCATAGGTAGGC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
AGTCGGAAGCAGTGTA	ref_3478_RC	29	26	32	39	21	26	25	24	18	27
GATCCATCTAGCCGGG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GGCGTACCTCCGGCCC	ref_3478_RC	31	20	31	37	18	30	32	39	20	26
TAATACACTGTTAAGT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TTGCTATAAGCCGCAA	ref_3478_RC	21	20	22	33	18	26	16	27	27	21
CATCTAGGATGACATA	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
CTTGTGTTGCGTAATA	ref_3478_RC	26	15	13	21	13	23	10	14	12	19
GAAGTTACTATGCCAC	alt_3478_RC	95	89	150	110	83	104	97	117	102	106
GTTTGATGTTTATGGG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TCCTAAATGTTCATAT	ref_3478_RC	90	48	129	103	52	85	69	101	70	90
CATCTACTTACGCCGT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGCGTGCGGCAG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TGACGTACGGCCGAGC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TCATTCTTATCCATTA	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTGGTACATAAA	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GCTACGGTTCAGCTTG	ref_3478_RC	27	27	50	41	33	34	19	38	31	30
TTCTGTCACAGTTTCG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TGGGTATCTTCTGATT	ref_3478_RC	27	20	34	35	12	31	19	31	17	26
TCGGGTTGTTCGGATT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
CATGGTCCTAAGTAAA	ref_3478_RC	9	9	5	7	10	4	1	6	4	8
CAGTGCGTCTCGGTGG	ref_3478_RC	62	40	64	47	44	51	59	61	42	41
TCGAGTATGCTAGGAT	ref_3478_RC	47	40	52	55	44	48	29	46	40	39
TCCCTGGTCATATACG	ref_3478_RC	38	29	43	38	22	37	28	41	42	38
GCTACGTTGTATAATA	ref_3478_RC	35	25	41	35	29	30	13	21	36	30
AACCTACGTCTGCCAC	ref_3478_RC	49	29	59	63	37	47	40	42	40	50
TGTTTAATAGGTCGTG	ref_3478_RC	41	35	54	57	29	37	27	37	26	41
ATATTTCTCCGTTACC	ref_3478_RC	59	33	72	67	37	50	36	60	38	50
TGTTTTATAATTCACC	ref_3478_RC	73	49	100	84	63	76	47	56	43	78
ACCGATTGTCCACATG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GTACTTTCGGGTGCTT	alt_3478_RC	98	98	138	119	109	115	117	107	117	121
GCGGTAGGTATACGGG	ref_3478_RC	92	67	95	117	65	83	62	85	81	81
CGGCTAACCGGTGGCC	alt_3478_RC	105	131	115	123	162	88	141	115	143	113
CGGGCCTGAAATGTTC	ref_3478_RC	21	11	18	16	8	12	9	9	16	14
ATTTAACCATTACGTT	ref_3478_RC	35	24	51	40	37	42	36	52	29	37
AAGCCTTCGTTTTATT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
CTAATGTCAGGGTATT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GTGTTGGGAACGCAGC	alt_3478_RC	14	10	18	17	5	9	17	14	11	8
GGCTCTGGTTTGTCGT	ref_3478_RC	34	25	57	49	32	41	25	42	32	28
CGACTCGTATTTGCTT	ref_3478_RC	12	8	26	15	7	11	8	7	5	10
GGCTTTGCACTCGCTC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
CCTAAGGCATTCCCTC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
AACGAGTCATATCAAG	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GCGTTCTCGTGTTTTT	ref_3478_RC	108	53	151	119	68	88	52	106	55	91
CTCCCATTTAGTACCA	ref_3478_RC	15	9	9	5	12	12	11	7	17	4
CGTGAAGTGCCAAAGC	alt_3478_RC	220	229	322	282	235	220	238	236	255	212
TTGGAGTGGAGGCCGA	ref_3478_RC	36	23	43	43	19	29	32	30	26	26
ACTTTTCCTTTTGATG	ref_3478_RC	5	4	7	10	1	4	6	7	2	6
TAGGATCGTACCTTTC	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
TATGTTATGGGGTGGA	ref_3478_RC	41	23	54	40	24	33	19	25	24	36
GAGGACTCCGCGATTG	ref_3478_RC	33	19	28	18	13	17	17	22	13	21
TCTGAGTGTGAAACGT	ref_3478_RC	0	0	0	0	0	0	0	0	0	0
GGCAACATTGGTCTTC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGGTAGGGTCATAGAT	ref_3478_RC	1	0	0	0	1	3	0	0	1	2
GGTGTAGTTACGGATG	ref_3478_RC	113	57	137	124	77	109	78	80	76	86
TTGCCGCTAACTTTTC	ref_3478_RC	9	13	29	17	9	15	16	31	11	26
GCCCAGAATCCGTGAG	ref_3478_RC	0	2	4	9	1	4	5	6	2	2
CCTCGTTTGCTGCTGC	ref_3478_RC	14	5	16	12	8	7	7	8	2	4
TAAGTACGCTTATCAT	ref_3478_RC	51	30	45	68	34	44	34	53	34	57
GCACACATATTACCCG	alt_3262_fdr	3	9	1	6	4	3	15	0	21	2
AATGTCGAAGTACGCT	alt_3262_fdr	12	7	9	11	10	7	11	7	11	6
TCATGTTTAACCGTCG	alt_3262_fdr	87	115	129	126	117	82	131	90	123	86
TTGGAGCTTGCGCTTG	alt_3262_fdr	0	3	8	1	3	2	8	1	5	5
ACGTCGTGGGGGTACG	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CTAACGCTTTGTTTGC	alt_3262_fdr	74	146	75	78	147	59	149	64	154	83
TATTTATTCTTACTCG	alt_3262_fdr	0	0	0	0	0	1	0	1	0	0
CGCCACCCATGGTCGC	alt_3262_fdr	11	17	27	17	8	12	18	18	8	10
GGTTTTTGCTCTTGGT	alt_3262_fdr	93	91	112	98	104	89	107	102	117	76
TGCCCTAGAAGCCTTG	alt_3262_fdr	22	23	20	22	35	17	26	19	26	22
TGATTTACTTGCCTCC	alt_3262_fdr	10	12	9	5	24	7	17	13	10	9
CACTTCCGAGTTAATA	alt_3262_fdr	45	43	66	45	70	41	40	53	52	40
GCGCGTCCTCCTGATT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGACGGCCATAGT	alt_3262_fdr	7	3	10	7	5	3	7	4	5	3
TGTTAAGTTTAGTTCG	alt_3262_fdr	17	28	18	22	25	11	25	28	38	14
TGGTCGTATTGTTGGA	alt_3262_fdr	22	33	33	28	19	19	33	24	33	21
ATTGGTGCAATCAGAT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TTACATTTGGCCGGTA	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TTACTGCACCGAGTTG	alt_3262_fdr	14	11	10	12	14	14	13	13	8	7
ACTCAGCTTGATATCT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
AGTAAACGGGGATTTC	alt_3262_fdr	26	40	35	30	52	32	32	25	45	26
TTTCAAGCTCTCTGGT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTAAGTCCCGACG	alt_3262_fdr	5	9	9	9	6	6	5	3	5	3
ATCAAAATCCTTGCGC	alt_3262_fdr	23	19	11	12	17	14	18	13	18	13
CAAGATGATTAGCAGA	alt_3262_fdr	33	57	56	29	37	32	33	34	51	39
CCAACTTCATAACGCA	alt_3262_fdr	9	7	8	9	11	5	7	8	15	14
TGCTGATGCCGTTATT	alt_3262_fdr	113	126	136	117	155	115	163	109	158	105
ATTGCATTTTTTCTTT	alt_3262_fdr	43	48	64	37	42	55	69	46	54	32
CTTTAGCTGGGCGTGG	alt_3262_fdr	46	66	32	50	47	46	50	32	43	48
CGAGCCGCGCCATTTC	alt_3262_fdr	29	40	30	34	41	34	35	24	34	25
GCATACGCGATCTGTC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
GTACCCCCGTGCCGTT	alt_3262_fdr	82	85	101	90	94	76	109	73	88	84
CGTCTCGTCTGCCTAG	alt_3262_fdr	6	3	4	2	5	3	5	4	4	2
TAACATCGGCCCGGGG	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TTATTGTATTTCTGCC	alt_3262_fdr	15	9	22	6	4	7	11	12	15	10
TCGGATAGCGAAGTGT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTTCATTCAAGT	alt_3262_fdr	46	66	66	54	62	32	52	42	65	46
CTCTAGCCTTCTCTTA	alt_3262_fdr	6	8	7	1	3	11	13	4	9	4
GTAAACAACATTCTAC	alt_3262_fdr	179	165	231	193	209	167	215	195	239	155
CGGCTCATCACGGGGT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTGTTACTATTTC	alt_3262_fdr	31	28	26	31	31	33	46	31	36	23
AATGTGTCAGCGTTGC	alt_3262_fdr	32	27	44	37	38	44	48	31	43	40
GTGGGCCAAAACTAAC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CATCTAGGACTGTCTG	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTAATTTGTCAC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
AGCCTCTTCGCCTAAC	alt_3262_fdr	20	39	33	26	22	26	33	20	39	25
GCTTTACAATTAAGGT	alt_3262_fdr	41	50	34	28	49	39	47	38	44	41
AATGGTAAAATAAGTT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CATGTTGATGCGCAGG	alt_3262_fdr	248	282	322	280	300	238	284	268	294	207
GAATGGATCCGTTCCA	alt_3262_fdr	9	7	19	4	7	4	5	10	8	10
TTGTGTTGTTGATCCT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CACTCGTGATCGCAAC	alt_3262_fdr	12	8	6	16	22	17	14	17	16	11
TTCACTTCGTTTTTAT	alt_3262_fdr	84	103	104	77	126	94	116	90	106	62
ACCGGGCCTGTCTCGA	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
AGTATGGGACTCGAAG	alt_3262_fdr	34	44	36	43	49	37	42	25	50	24
TGCCGTGATCTTAGGC	alt_3262_fdr	14	14	14	24	8	18	21	6	18	13
GTTCGCCCGGCCCACT	alt_3262_fdr	3	2	5	3	5	1	5	3	8	4
AATTTGGAGATATACT	alt_3262_fdr	8	20	24	22	25	15	21	18	19	7
CCTACTAAGTACTTTC	alt_3262_fdr	7	16	7	6	21	3	13	12	17	8
ATGTGTGCTAGACTTC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CTCAGATCGGTCCCGA	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCAGCGCTTATAG	alt_3262_fdr	40	33	39	41	39	38	37	32	47	32
TGCTCAACGCGCCTTC	alt_3262_fdr	31	40	43	27	34	39	40	21	45	30
GATGTGTGCCTTGTGC	alt_3262_fdr	1	6	6	3	2	0	9	5	5	5
CTTTTGCCCATCAGCC	alt_3262_fdr	2	4	5	7	6	6	5	3	10	5
CAACTCGACATACATC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
AGTGACATGCGCGACA	alt_3262_fdr	23	42	35	45	41	23	49	23	33	31
GTCTTTTCGATCGCGC	alt_3262_fdr	24	36	18	19	28	15	19	18	18	14
GTCGCTTGCCCTCTCT	alt_3262_fdr	7	4	11	4	5	9	8	2	6	12
TCGCACCACAGAAGAT	alt_3262_fdr	8	14	11	7	12	7	14	4	8	11
TTCCTAATGCTCTACC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTATGAAGGGTGT	alt_3262_fdr	5	10	8	8	8	9	8	5	7	3
CGTGGCTATCTGACAT	alt_3262_fdr	39	81	57	50	91	38	94	49	92	35
GAGTCGTGCTGCCCTC	alt_3262_fdr	18	18	22	13	34	19	15	17	13	12
TCGCTGTACGCGCAGT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CCAATCGTCTTGGATT	alt_3262_fdr	16	30	18	18	30	15	31	14	32	13
GGGGGCTAGTCTAAAT	alt_3262_fdr	0	3	6	3	5	3	4	2	1	2
CCTGTATTTTTCATAG	alt_3262_fdr	4	8	13	3	2	6	8	3	4	5
CTGGCAGCTACAAGTG	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
GTCAGCCTTACACGTA	alt_3262_fdr	4	4	2	2	7	3	9	1	6	1
TCTGTGCGGATAAATC	alt_3262_fdr	89	108	97	92	90	67	116	73	87	64
ATAAGTCTTATCCGAG	alt_3262_fdr	22	23	30	26	39	18	23	29	39	14
TGCGTTCATGGATATT	alt_3262_fdr	41	38	48	44	52	27	54	42	44	36
AGCGCGTCCTGTTCAG	alt_3262_fdr	43	60	59	63	86	42	59	44	70	59
AACTACGTACCATCAT	alt_3262_fdr	51	79	29	48	73	54	90	51	95	31
TAACCTCACCTTTGTC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAGTGACGTTATT	alt_3262_fdr	42	33	53	43	65	38	41	48	62	30
CCTGACGTTTCCAATT	alt_3262_fdr	21	33	40	26	28	24	42	30	27	27
CGCGACTACTACTTAG	alt_3262_fdr	50	70	57	64	84	40	71	35	65	42
CATGCTTTTCTCTCCT	alt_3262_fdr	4	2	8	0	4	3	7	2	5	1
TGATAATCGACGGAAA	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CGTGACGATTCCTGGC	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
AGCCTCCTTTCACTGC	alt_3262_fdr	29	34	27	19	31	23	28	17	37	22
TTCCCATCGTCGCCTT	alt_3262_fdr	7	10	4	4	8	2	6	8	8	2
CCTTTTGGTCGGCCTA	alt_3262_fdr	45	54	61	47	58	45	58	55	74	51
TAACCACTTTGTGAAT	alt_3262_fdr	16	19	20	14	19	10	20	19	27	12
AGCTCATTCTAGTTGT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGATTTTCTCGTC	alt_3262_fdr	49	50	48	31	30	33	47	22	57	24
CAAGTTGATGCGCAGG	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TGGCAGCGCTATTGTT	alt_3262_fdr	3	1	2	4	6	2	3	2	1	2
GCAAACAGAGGATCGG	alt_3262_fdr	33	41	43	35	43	31	38	20	49	33
TCGATACTCCTGCGTG	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCAACGATAGTTT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
GGGCGGTGGAGTTTTT	alt_3262_fdr	20	24	27	26	32	23	21	29	15	19
GCCGAGAACAATTCGC	alt_3262_fdr	10	14	20	16	17	9	17	18	15	14
GCCGCCTACCTCGGTG	alt_3262_fdr	41	60	64	81	87	38	84	63	80	38
CGCAATAATTAGAAGA	alt_3262_fdr	15	18	30	7	21	19	26	19	24	13
ATTCGTAATATACCGT	alt_3262_fdr	8	11	11	8	13	9	15	12	13	13
ATTGAGATTTTATGGC	alt_3262_fdr	44	36	41	47	26	32	27	23	29	34
CTGTAATTTTCAGCCC	alt_3262_fdr	5	4	1	5	4	4	1	0	9	6
ATTCCGCATAATCATA	alt_3262_fdr	2	2	2	2	4	3	3	1	2	5
TTGCAGGGGTGATAAT	alt_3262_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTTCAGCGGGTAT	alt_3262_fdr	9	13	14	14	21	11	10	13	9	9
ATGTGAGCTCGAAAGA	alt_3262_fdr	52	72	78	72	68	52	51	65	77	35
GTTCGCCACCGGTGCG	ref_5336_RC	3	3	5	2	11	7	6	3	9	8
AACAGTCCCGCTGCGT	ref_5336_RC	81	81	104	103	107	91	117	80	92	80
AATTAATGAAAGAAGA	ref_5336_RC	103	70	116	81	118	106	95	99	85	72
GTTTCCACGCGACCGC	alt_5336_RC	238	246	254	217	197	227	236	165	241	174
ACTATAGTGCCAAGTG	ref_5336_RC	30	26	39	41	24	44	35	46	49	40
ATGTACGAAATAAATA	ref_5336_RC	16	10	13	19	8	14	14	19	13	17
GCAACAGGAAGGTGTT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CTCTGTATACTACCTT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
ATTCTGGGTGCTGACT	ref_5336_RC	27	35	34	52	42	36	49	38	36	41
ACGGCGTGAAGTGCCC	ref_5336_RC	12	17	17	14	14	14	11	16	14	10
CGCTCGTCCGGATATA	ref_5336_RC	35	35	38	40	41	31	45	33	36	27
CATTACAACGGGCCAT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TACTCTAGTGTCTCGT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CGGTGACTCATTCTCT	ref_5336_RC	69	48	99	75	62	63	31	82	37	72
GTGTAACGAGAACCTC	ref_5336_RC	8	8	11	14	10	9	7	9	6	10
GGGGGAATACGGCTCA	ref_5336_RC	42	33	42	49	35	48	40	45	38	36
TTCAGCTACTGACTCG	ref_5336_RC	14	10	30	10	18	14	18	10	12	11
TAACTAGAGTACCTCG	ref_5336_RC	57	75	79	76	74	54	81	60	78	49
GTCTACAGTAATCCTG	ref_5336_RC	9	10	13	21	11	14	6	18	11	16
GGGGTCGTGCATGGTC	ref_5336_RC	4	8	10	11	7	6	8	10	5	9
TTTGGGTTCAACCTTA	ref_5336_RC	20	23	22	30	24	20	21	18	29	15
AAGCTTGTCTTAGCGA	ref_5336_RC	51	41	44	38	43	30	34	26	42	32
GTTTACGTGAGAAAGA	ref_5336_RC	6	7	4	2	7	6	2	7	6	8
GCATCGTACCGAGTGT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TCATAGTACTCATGGA	ref_5336_RC	19	32	37	22	23	8	31	17	28	20
TCTCTAGACATCAGAG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TACATTGATCCATCGT	ref_5336_RC	67	47	73	74	59	67	59	42	58	59
TTATCTGTTTGTTATT	ref_5336_RC	5	13	10	13	9	10	9	7	8	15
CAGACGATCTGCTAAT	ref_5336_RC	6	11	9	4	12	3	5	3	12	8
TTTCTCGGGCATGATG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
ATCACAGCGTCGCAGT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
ATATTGTCTCAATCCA	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CTTGTAGCATTGCGTC	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GGTTCTCTGCGTTGGG	alt_5336_RC	32	46	42	42	49	43	43	35	44	45
GTGTACTTTTCGGACA	ref_5336_RC	49	77	71	43	62	60	64	41	76	58
AGCACAAGGATCGCCT	ref_5336_RC	2	2	0	1	0	0	2	0	3	0
GTTGAACCTTGATCAG	ref_5336_RC	30	29	40	32	32	26	41	35	27	27
TCCCTTGCTCCTTACA	ref_5336_RC	50	56	74	53	55	52	65	57	71	43
CGGATTATTTATTGCT	ref_5336_RC	24	35	36	41	37	29	31	33	31	35
CTCCACTTTGAATACG	ref_5336_RC	69	55	52	39	72	49	63	50	63	37
TAGGCATGCGACTTCC	ref_5336_RC	2	3	0	2	2	1	4	0	3	0
ACTAATCTTGCGTCGG	ref_5336_RC	38	24	35	32	22	28	24	28	37	36
CGGGTTTCTACATTAA	ref_5336_RC	28	18	25	14	31	17	15	18	14	23
GTTAGCTAGTCCCCCA	ref_5336_RC	22	18	15	22	11	21	19	26	31	17
TTACATTGGCGGTAGT	ref_5336_RC	30	19	29	23	20	21	35	19	30	20
TCGCTTTAAGTTTTAA	ref_5336_RC	6	4	7	7	6	0	3	4	4	4
CCGTACCGGCTTTTTG	ref_5336_RC	56	54	68	51	59	34	55	37	78	43
TCTCTTGGGGGTAAGG	ref_5336_RC	7	7	4	12	0	1	5	2	2	3
ATACAAAACGCGGTCC	ref_5336_RC	3	13	11	8	13	5	5	7	7	5
TATCCGCATCGGTTTG	ref_5336_RC	164	202	210	149	161	168	203	130	209	137
CCGAATTACTACTTTT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CAGCTCGAGTTATTCT	ref_5336_RC	125	36	139	143	43	116	39	107	24	124
CGGATTGATCTAAGTG	ref_5336_RC	11	8	10	7	15	11	5	8	5	6
CGTAGGCTAGCCCCTT	ref_5336_RC	5	12	10	13	16	5	12	7	6	12
GGTCTGATGATGTTCA	ref_5336_RC	59	45	57	44	45	52	37	55	43	40
AGACACCTTGTGTATC	ref_5336_RC	16	19	14	14	18	17	18	9	19	10
GATCACTTTAAATATA	ref_5336_RC	15	11	17	21	11	11	15	24	18	22
TCACTCAATCTGGCGT	ref_5336_RC	79	87	102	75	88	49	86	58	72	68
CCGTGTCGCACAATAT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
AAGTGTGTATCTTCGC	ref_5336_RC	31	25	31	19	30	20	39	23	23	25
CAATTTTTACACCTAG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GTTCACATGTCTACCT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
AGGGATGAGATATTCA	ref_5336_RC	70	64	92	75	62	51	62	55	71	67
CAACGAGGTTGCTTTT	ref_5336_RC	10	39	41	17	27	23	18	15	15	20
CATCTTTTCTCGCAGT	ref_5336_RC	121	124	149	142	140	140	165	118	140	122
TTTTTGATAATCCAAA	alt_5336_RC	29	23	54	18	39	15	27	33	30	27
CTCCGCTCAAGCGCCA	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGGAAGTATAAG	ref_5336_RC	125	142	165	125	128	142	149	118	126	128
CTAGGTTTAAGCCGCC	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
ACTCGTTTTGGTGATA	ref_5336_RC	42	47	54	36	49	51	50	42	48	47
GGTTGTAGGCGAAATA	ref_5336_RC	12	8	6	10	3	11	15	13	10	10
ATAGAGAGTGCTCGAG	ref_5336_RC	65	65	68	94	54	69	92	60	98	53
CTGCGGATTTGCTTAT	ref_5336_RC	42	41	45	36	37	38	36	32	34	30
ATAGCGGTTTTATGCC	ref_5336_RC	93	53	120	82	71	68	73	55	63	64
GAGCAAGCACAAGCCG	ref_5336_RC	5	7	9	15	7	4	6	8	8	3
GCCATTGATACTGAGG	ref_5336_RC	121	133	164	125	131	118	150	137	151	129
AACCTCGCGCCCTGGT	ref_5336_RC	20	28	32	16	27	25	27	15	24	21
GGTTATGCGAGACACG	ref_5336_RC	92	116	138	99	120	86	113	94	102	116
GAAGTAATTTGGTATT	ref_5336_RC	36	24	41	28	37	25	40	28	38	28
CACCGAGTCAGTCTCG	ref_5336_RC	106	103	121	116	118	102	120	93	101	101
TTATCCGATCTACGAT	ref_5336_RC	6	4	7	7	8	2	9	10	5	5
GGCCTAATATGATCAT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GTTAGGCAAGCCTTCC	ref_5336_RC	34	55	24	40	53	31	50	35	30	34
TAGTTTTTTGATCAGG	ref_5336_RC	6	3	5	5	8	5	7	7	7	3
TGTTGTGCCATCGTAT	ref_5336_RC	94	68	97	73	97	62	75	63	84	62
TGATTTAGGGTATCAG	ref_5336_RC	16	6	7	6	7	3	10	4	13	8
ATACATGGGTAATTGT	ref_5336_RC	49	40	58	55	43	45	55	43	36	51
GACTCATGTGCGTCTT	ref_5336_RC	12	32	27	28	39	23	26	20	34	29
GCCACTTGTCATGTTG	ref_5336_RC	60	136	115	108	124	79	136	89	130	82
TTTATCTCTGTCCAGT	ref_5336_RC	21	21	32	18	13	20	25	19	22	16
CCTTATTTGGTCTCTA	ref_5336_RC	15	25	34	20	28	15	30	15	27	18
CATTCAAAGTTGCACT	ref_5336_RC	9	23	14	11	26	13	19	11	22	15
GCCGGACGTAGCGGTA	ref_5336_RC	53	56	52	50	37	22	37	45	46	40
GTTTATTATCGTCATT	ref_5336_RC	44	37	46	35	47	42	44	33	41	35
TATCATTGTGTTTTTT	alt_5336_RC	82	90	68	80	83	57	101	61	99	70
TGCGTTCCTCAGTGGT	ref_5336_RC	46	46	34	39	30	29	43	30	49	37
GTTACTCCCGTCGATC	ref_5336_RC	1	33	3	4	25	2	28	2	38	2
GGTCAATCCCCGCTCT	ref_5336_RC	14	18	8	13	14	7	13	14	19	9
CGGAGGCTCCGTCTTT	ref_5336_RC	15	15	14	11	19	19	23	12	14	9
AAATAGGTCCTTATTG	alt_5336_RC	3	6	5	1	2	0	2	2	5	5
CTTTCGGGTCCAACGT	alt_5336_RC	24	40	27	36	36	29	34	29	29	32
TCGACATGGTTTTGTG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
ATCCCATACCTCTCGT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TGATTGACTTTAATCA	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CATGTGGTTAAGTACC	ref_5336_RC	15	13	25	19	22	14	25	12	21	16
ATTCCATACCTCTCGT	ref_5336_RC	114	113	120	121	105	108	122	102	117	100
GGATCAGCGACACTCG	ref_5336_RC	26	34	37	23	31	23	37	16	36	23
ATATCCACCTTATAAA	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
ATCACATCGCTTGTGT	ref_5336_RC	52	69	83	45	50	73	59	51	48	55
ATTGCCACACTCTCCG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GCTAGCTTAGTTTTTA	ref_5336_RC	13	15	19	17	11	11	15	16	19	7
TCTTTCTTCCCTAAGA	ref_5336_RC	12	11	18	17	13	14	11	13	12	11
GTTAGGTATTTGGTGA	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GAGCTGGAATAGGATA	ref_5336_RC	75	82	87	82	70	75	84	74	85	80
GTCACATGGCATATGG	ref_5336_RC	17	20	29	30	20	38	27	28	25	40
TTGTGTGTAAAGTTCA	ref_5336_RC	24	28	36	34	23	27	27	22	29	27
TGAAGTGGTATTTGTA	ref_5336_RC	32	25	42	27	39	20	48	26	37	33
ATTAGGTCTGCCCAAC	ref_5336_RC	131	103	184	137	157	133	150	135	130	127
CCCAGGGCGCTCGGAC	ref_5336_RC	167	219	280	199	260	174	232	197	258	180
TCTTTTCATCTTCGTT	ref_5336_RC	0	4	11	7	5	2	1	1	2	1
CTGACTCAGGGACCTC	ref_5336_RC	38	32	31	42	29	26	27	42	26	27
TTACTATCCGGTCGAG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GCCTCTGAATGTTGCG	ref_5336_RC	37	34	33	28	37	21	29	24	51	32
AGACACGTTCGCCCGG	ref_5336_RC	130	156	157	127	131	126	140	140	143	107
AACATAAGCTTATCTA	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TACCGATCCGTGCAGC	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CTCACCTCTAGAACAG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GAACGCCTCTCGAAGA	ref_5336_RC	57	30	37	43	50	43	43	31	48	23
GAGGACGCTCCTTTAG	ref_5336_RC	16	15	5	12	12	10	9	10	5	13
ATAGTACAAGAATACG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
AATCCGGAGATCGTCT	ref_5336_RC	64	64	61	39	70	67	58	43	76	53
TCGTACTCGTTGTATA	ref_5336_RC	20	31	25	31	32	25	33	32	28	24
ATCATCGTTATTGCGT	ref_5336_RC	66	55	76	50	63	68	52	47	59	44
TGTTTTCCGACTTAAG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
GAATGTTCGTCAAGCG	ref_5336_RC	2	7	5	0	2	0	3	2	1	3
TCCGAGCAAGTCAGTC	ref_5336_RC	16	24	16	18	34	14	24	14	23	14
TTTTACCCAGGCTCGT	ref_5336_RC	19	20	13	21	16	19	9	20	19	16
GCGTTGTCCGAGTGTG	ref_5336_RC	30	49	43	46	48	30	41	26	50	24
CAAATGTCCTTTAATC	ref_5336_RC	153	118	159	143	137	142	115	143	131	126
CCCAGAGAGGGGCGGC	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TCCCTGTTCATGAGTT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CATTGAATCCGCGCGT	alt_5336_RC	22	29	32	23	46	31	33	30	41	18
GTTGCGCCGTACATCT	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
TGAACCGCTGCTAATG	ref_5336_RC	93	72	83	84	73	84	87	66	95	65
CTACTATTTCGCTCTC	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
AAGAATTTATTAAACT	ref_5336_RC	29	21	25	17	17	17	7	13	22	15
TAAATCTCCATTTGCA	ref_5336_RC	29	37	29	30	16	31	24	22	35	28
GGGTAGCGCTTATGAA	alt_5336_RC	60	59	82	71	64	61	61	49	82	46
TTTTTCAACTTCCGCC	ref_5336_RC	266	238	318	258	228	238	237	247	247	241
ATGTGGCCATCTACTG	ref_5336_RC	0	0	0	0	0	0	0	0	0	0
CTTCGTCGTTAGATGA	ref_5336_RC	14	9	10	12	17	14	18	12	22	10
AATGTCGTATCTGCCA	alt_5651_new	27	37	35	27	31	20	33	22	33	34
GCGCTTCTACTATGGT	alt_5651_new	31	48	34	19	73	25	61	28	50	29
CCGGCCCGTTTAATGA	alt_5651_new	53	70	67	63	83	45	88	56	78	36
GCACGCTTGCAATACA	alt_5651_new	7	6	6	3	10	4	6	4	1	1
ATTAAGATGGGTGATG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CTGCCCACTTCTGACC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
AAGAGCCGAGTCACTG	alt_5651_new	0	0	2	0	0	1	1	0	1	2
TGACCCGCTTCAAGTA	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GCTTAGTGCCCACGAT	alt_5651_new	6	23	6	8	20	8	14	11	27	6
GAGAGCGTTATTCTGA	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TCCGTGCAAGCTCGGT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
ATACCTGTTCGTGTCC	alt_5651_new	73	155	75	75	176	75	165	63	167	59
TGATTTTCGGCACTTG	alt_5651_new	22	57	42	51	62	39	72	46	64	33
GCGGAGCAACCTCTTA	alt_5651_new	4	18	21	14	20	17	22	8	22	16
TCGATGAAAGCTAAAG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CGCTTGGCGCAGCGCG	alt_5651_new	8	14	7	4	6	4	9	5	13	6
CTGTTTATCAATGCTT	alt_5651_new	8	13	5	8	15	8	5	3	16	4
CGCTTTAATTCGGTGT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GGGGAAGAGATCTTGC	alt_5651_new	14	17	10	4	12	15	18	6	21	4
CTATCCTTTCGAGATG	alt_5651_new	9	12	5	3	9	4	20	3	10	7
TGCCATAGGAAGTGAG	alt_5651_new	18	24	21	17	28	25	16	14	21	16
ACGCTATACTTTGGGT	alt_5651_new	38	49	49	37	62	35	59	35	87	29
TACCGCGTCTTATTTA	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CTATAGCGTCGGTTCC	alt_5651_new	49	99	59	63	89	49	98	58	102	52
TTCTAGTCCTGACATG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TCTATGGTTACTCCTA	alt_5651_new	17	42	18	13	22	10	50	10	24	18
GTGACTGGTTGCAAAC	alt_5651_new	44	74	46	51	94	41	75	38	101	38
TTTGGTTTATATAATC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
AGAAGAGCGCCCCGAT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GTCCGAATAGGTTGTG	alt_5651_new	38	64	49	36	90	27	66	23	55	29
ATAGTTGTCCGTGTAT	alt_5651_new	7	13	8	5	11	4	17	5	20	12
GGTACTTGGATCGATC	alt_5651_new	14	20	19	17	24	15	23	9	36	10
TATGTCTGCAAATGCC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CAATGGGGCGTAGTAA	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CTGGTAATGTAACTTC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GTGAGTTCAGTTACTC	alt_5651_new	5	12	12	5	13	11	12	3	11	3
GACACGGACAAGGACT	alt_5651_new	11	21	9	10	22	11	27	24	16	17
CAATCCGTCTTTAAAG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CCGGTATTGGGTTCGC	alt_5651_new	0	2	0	0	3	0	0	1	0	0
GTTCTAATTACGACTT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GCATTATTGCGCAAGT	alt_5651_new	85	161	110	81	165	87	170	102	179	89
GAGATAGATAAGTTTT	alt_5651_new	2	3	4	1	5	0	4	2	2	1
TATTCAACCACGATCA	alt_5651_new	25	44	37	31	53	22	55	28	38	29
GTGCCTGATTAACATC	alt_5651_new	14	21	9	12	29	17	32	12	23	5
TAATACTCCCCCCCAA	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TTACAGTTCACTGCCG	alt_5651_new	35	66	44	42	83	48	46	46	85	37
CTTCAGCCTGACTCCA	alt_5651_new	7	21	7	7	17	9	30	13	28	12
CTCTTCTCTAGAACAG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CCCTTCTGTTTAGCAC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GCGTGTTTCAGCCCTT	alt_5651_new	19	48	27	29	25	20	47	13	52	26
ACGTGGGGGCCTAGTT	alt_5651_new	48	64	78	44	76	50	78	39	58	43
GCATTATTAGCAAGAT	alt_5651_new	31	42	31	23	34	19	33	33	41	22
CAGCTGTGGGTCTACC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TCACCTCTGTTGCCGT	alt_5651_new	89	186	102	113	210	80	187	76	207	72
TCCTGGTGTTACCGGC	alt_5651_new	63	75	56	55	63	48	78	44	76	40
GTACGGGATTGATTTT	alt_5651_new	3	13	6	14	12	4	14	7	26	10
AAGTGAAGGTGAGGGC	alt_5651_new	12	10	18	10	11	2	22	8	10	17
TGCGGTTCACGGTTAA	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TCAAAGGGTATTTATC	alt_5651_new	73	118	93	86	112	71	134	89	128	69
CAAGGATATCGTTGGT	alt_5651_new	2	10	3	0	4	3	4	3	5	6
CCTCATCGTTTACACG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TTTCTCGCCTGACTAT	alt_5651_new	19	33	30	32	49	25	55	22	42	11
ACCCACCCCTGCCCGA	alt_5651_new	7	4	13	4	6	5	16	3	18	7
CGTTCGATATAGCTTT	alt_5651_new	18	27	5	17	22	14	37	8	19	12
AAAGCTGATGCCCCGG	alt_5651_new	15	24	11	15	21	17	27	13	28	5
CGTTAAATTCTTCCTC	alt_5651_new	31	29	30	18	27	27	39	19	31	20
TCAGCTGCTTTCGTAC	alt_5651_new	16	19	10	6	17	10	26	8	26	10
CACGGAGTTACACCCT	alt_5651_new	7	11	2	5	7	7	9	1	10	1
GCCACTTTGTACTTGT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
ACAAATCGTATTGGAG	alt_5651_new	14	25	19	16	33	20	37	13	23	19
TGTTGACCTCGGGTAT	alt_5651_new	20	20	13	12	29	20	26	18	26	12
CTCTGTACAACTTTTA	alt_5651_new	26	37	24	14	22	24	41	17	53	20
GGGGCGTCTTTGCAAG	alt_5651_new	5	21	13	9	14	7	27	13	13	4
TCTCGTCTCTTACTGC	alt_5651_new	11	11	14	7	9	10	21	13	19	7
CCATCCTTACGGGAAA	alt_5651_new	103	195	133	107	172	113	195	76	186	61
CTGTAATAGTTGGTTC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TTGGTTCGGTTTGAAG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CGCCGAGTCACGCCTG	alt_5651_new	19	30	29	11	39	19	18	22	26	8
CGAACCAGGCTTGGTC	alt_5651_new	28	52	34	28	46	29	57	22	52	23
ATACCGACCTTCAACT	alt_5651_new	27	45	26	24	67	15	62	23	71	19
CGTGGTCCATCTTAAT	alt_5651_new	20	30	33	34	50	12	33	17	43	15
CCTAGGCAATGTGATG	alt_5651_new	15	39	18	11	41	14	36	14	25	16
CCATCGTCGTCCTGCC	alt_5651_new	52	72	56	54	63	57	84	60	81	40
CTTTAGTCTAATATGT	alt_5651_new	31	45	31	18	58	28	52	15	58	23
CCCATAGAAGTTAAAC	alt_5651_new	24	46	30	17	56	29	52	16	59	26
AAAGTCACGGTCGCAT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
ACCACTCTTAAGCTTA	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GTGGAGGGAAGCCGAC	alt_5651_new	14	17	7	6	13	2	10	6	15	12
TGCACAAGGTGTACTA	alt_5651_new	15	32	29	26	30	11	33	11	28	21
GGGGCTACCGCTTACT	alt_5651_new	3	9	10	7	10	8	11	10	7	10
TTTTATTGGCGTGTAC	alt_5651_new	41	55	48	45	54	36	66	41	56	25
GGCCTAATTTTTGGCT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CGTATGTAATTGGCAG	alt_5651_new	10	31	24	15	43	12	32	11	23	13
TGTCACGGGAGCCGCC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TTCTTTTTCAGTTAAG	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TTCTCTCGAAGGCATT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
ATTCCCTTCGTTGCGC	alt_5651_new	17	29	16	7	18	11	18	10	19	13
CGCGGTTTTGTCAACC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GTTCCGGTACTGCGCT	alt_5651_new	34	81	45	28	94	39	104	34	85	36
TCGGCCGATCGCAGCA	alt_5651_new	46	48	49	54	64	40	74	48	75	28
GGCATTAGAACCATGT	alt_5651_new	0	2	0	0	0	0	3	0	2	0
GCCCTCCACTATGTTA	alt_5651_new	19	20	12	15	17	12	23	17	22	15
ATTTGTTCCATGTATT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
CTTTATGTGTTTGGTT	alt_5651_new	5	18	13	3	25	7	14	8	32	9
ACATTACCGTAGCTGT	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GCACAGTGGAACCCGC	alt_5651_new	2	14	8	10	20	3	11	4	10	1
TATACTAAGAGTGTAT	alt_5651_new	11	43	14	14	25	10	32	9	29	8
GTTGTACCGGTCGTTG	alt_5651_new	2	6	4	0	5	3	5	3	4	0
TACATTTCATCCGGGG	alt_5651_new	23	28	28	27	51	30	46	13	57	24
GACTAATGGATGTTGC	alt_5651_new	33	45	39	40	36	30	38	29	49	32
TGTCGACCCCCAACTG	alt_5651_new	21	35	27	22	35	35	37	23	36	22
ATCAGGCTGGGGCTTC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
GAATGGTTTGTACTCG	alt_5651_new	4	11	4	7	11	11	14	3	13	2
TTGTTTTGACACTTTT	alt_5651_new	126	176	135	116	220	114	209	105	205	118
ACCTCAAGTGAGGTTC	alt_5651_new	0	0	0	0	0	0	0	0	0	0
TGAGAGATCCCCCCGT	alt_5651_new	9	26	6	8	26	8	34	2	24	2
TGACCCCAATGCAACC	ref_3262_upstream	358	436	541	396	445	380	504	356	443	364
TCTCCCAGTGTCGTTT	ref_3262_upstream	33	44	32	19	63	21	62	25	47	29
GGGTCGTCGTTCTTAC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TATATTTGACCCTCAT	ref_3262_upstream	22	30	28	27	31	17	29	29	27	21
TAGGATTTCACTGATG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
AGTCACTTGTGCACCA	ref_3262_upstream	13	25	23	15	24	19	15	19	15	25
AACTCTGAATACGGAT	ref_3262_upstream	9	11	19	9	21	11	15	6	17	8
ACTGCTTTTCCTACAA	ref_3262_upstream	41	37	38	34	43	32	44	30	50	32
CTTGCTCCCCTGGATC	ref_3262_upstream	2	12	10	8	16	11	21	8	9	4
TTAAATCGTACTGTTC	ref_3262_upstream	58	65	66	50	52	45	70	49	74	37
CGGGATGCCAGTCATA	ref_3262_upstream	36	34	42	29	50	36	31	29	29	28
GCATGCACCTCTTATA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
CGATCATGGCAGGTCA	ref_3262_upstream	17	26	17	19	26	28	21	21	25	18
TCGGGAGGCACGGATT	ref_3262_upstream	113	127	131	96	120	131	140	110	136	90
CTTAGCATTCTTGTCG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTATGAGTACCATTGC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCGAGCGAGTGCC	ref_3262_upstream	17	17	10	7	7	8	13	11	18	12
TCCACAAGTGTGCCCT	ref_3262_upstream	15	50	20	15	36	15	39	14	30	16
CGTGTAGGGCGCAGAG	ref_3262_upstream	1	2	1	3	1	0	0	2	0	0
TTTTACGCCCTATAAG	ref_3262_upstream	10	14	5	9	9	12	9	7	13	2
CGGTATGACATGCTAA	ref_3262_upstream	7	12	7	3	24	10	17	5	17	7
GATTATTAGTCTTTTG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTTTCAACCTGT	ref_3262_upstream	22	31	15	25	30	19	30	13	32	19
GTTCGTCGCAGGTATT	ref_3262_upstream	4	7	7	5	6	8	6	5	10	7
GCCATGGATTATCGCT	ref_3262_upstream	0	3	0	0	3	0	4	1	2	2
CGCTGCGCTCTTGTCC	ref_3262_upstream	149	163	175	157	212	122	157	173	194	146
ATCCATTTCTCGATAT	ref_3262_upstream	8	16	6	8	13	12	4	5	13	11
TAGTTGTTATCTGGTC	ref_3262_upstream	28	40	48	27	30	24	39	29	48	35
TACTGTTCCAATTATT	ref_3262_upstream	3	9	4	12	10	7	10	2	7	3
GACTCTGTTGATAGTT	ref_3262_upstream	3	2	0	2	1	1	1	2	3	1
GTCGTGTCTTGTTTGT	ref_3262_upstream	5	9	11	6	9	1	12	8	7	8
GTATTATGATATGACT	ref_3262_upstream	21	41	23	25	40	31	32	34	35	27
GAGTAATTATAAGATG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TGATCCCGCTCACTGG	ref_3262_upstream	18	6	19	17	25	12	20	11	11	21
ATCCCACTGCCGGTCC	ref_3262_upstream	86	108	97	88	117	81	88	70	142	66
CCTGTCTTGATCTGAA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTCTTTTGGCCGA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTGATGCTTCAAG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
AACTATGGAATGTGTC	ref_3262_upstream	14	16	12	13	8	10	24	15	17	8
TTTCCACTGGCTGTGC	ref_3262_upstream	19	58	25	19	50	11	51	22	55	12
TCCGTGAACCTCCCCT	ref_3262_upstream	13	20	9	18	23	19	25	8	26	15
GTACCTGTAAGGATTG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGAGGCACCGCCA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
CTGATGTTCCCCCCTA	ref_3262_upstream	40	28	51	47	36	33	47	31	33	42
GATTCATCGCACCACA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATGACCTCGTGTTGTT	ref_3262_upstream	13	26	19	9	26	7	14	13	23	10
TCTGTTGCACACATTG	ref_3262_upstream	10	19	7	21	13	8	14	12	13	19
GTGGGATACATCGCAT	ref_3262_upstream	35	46	41	35	29	43	49	42	35	24
GGAGGGAGGTTAGCAA	ref_3262_upstream	229	247	307	246	206	213	240	220	232	210
AAGCGATTGTGTCGTG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGCGGGTACGTTC	ref_3262_upstream	49	54	49	51	62	35	75	41	71	39
TTGGACACTTGCGCGA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TGCCATCCTTGAAGTT	ref_3262_upstream	24	42	32	34	42	28	44	26	46	19
TCCGTGGGCATTCTCA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
CCCAATCACCAGTCCC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
AAACCTCCGCTGTATG	ref_3262_upstream	76	64	106	75	89	82	87	76	85	71
ATCATCACCAAGCTGT	ref_3262_upstream	35	23	49	41	36	30	39	36	39	27
CACCTTGTCACTTTGC	ref_3262_upstream	6	23	14	7	27	10	23	3	22	14
ACTGAGCGAGGCGAAT	ref_3262_upstream	7	10	10	7	17	8	10	9	4	9
CGGCCTTGGATTTGTG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGTGCGGGGACCC	ref_3262_upstream	56	43	49	42	34	38	45	37	55	35
CCCGCGCACTGGAGGA	ref_3262_upstream	17	14	14	11	21	14	19	13	22	14
TGTTTCACGTCCTAGG	ref_3262_upstream	1	0	5	4	2	2	1	5	1	0
AGCATTCCAGCCTAGT	ref_3262_upstream	28	33	36	22	27	21	32	20	32	17
GCGGGGATTCTGAATT	ref_3262_upstream	18	40	36	24	28	18	20	19	26	18
GTCTAATGGGTTCTGC	ref_3262_upstream	5	6	14	7	11	5	15	5	9	9
AGTAGTACTTAGCTAG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTGCATTGTTCTG	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
AGATAGGTTCCAGTTA	ref_3262_upstream	13	21	15	13	24	12	28	14	21	18
TTAGAAGCCGGCCTAG	ref_3262_upstream	10	18	10	12	14	14	17	12	30	11
TCGTTCCATTAGACCC	ref_3262_upstream	23	12	27	33	31	18	33	16	21	25
CCGCTCCCACTCGCCG	ref_3262_upstream	11	20	13	18	29	15	19	15	22	9
TTTTCTTGACTACGGC	ref_3262_upstream	11	20	16	19	18	7	11	13	25	11
AAATTTTTTTCTTACT	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCAACCTACTTAC	ref_3262_upstream	3	19	0	0	23	1	20	1	29	2
GCCAAATTCCAGTCTC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
ACATTTTTGGCGAAAC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTGGTCTATTTT	ref_3262_upstream	19	20	20	21	29	11	20	13	27	20
TCGTGCGGTTATTCCG	ref_3262_upstream	12	5	3	8	5	7	5	5	9	7
TTTTCTACCATGCAAC	ref_3262_upstream	11	9	13	10	14	17	11	12	11	10
GCTATGTCCCAGTGTA	ref_3262_upstream	12	20	13	10	10	5	12	7	24	9
TGTAGCCTCGATTTAT	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
ACTAGAGACATCATTC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
GGGACAGTTCTGACGA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTTATAATTGAA	ref_3262_upstream	79	75	89	71	85	65	83	71	77	67
ACTTTAGTCAGCAAAC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTTAACCCTTGT	ref_3262_upstream	109	154	158	124	165	117	150	101	161	121
ATTTATCTTCTCTATT	ref_3262_upstream	25	25	31	26	33	21	30	30	26	28
GGCACGAAAAGGCGCG	ref_3262_upstream	8	4	9	5	2	3	6	4	3	6
AGGTAGGTATTTATGC	ref_3262_upstream	204	181	239	202	234	188	246	158	270	153
GCATCTTAATGTCGCC	ref_3262_upstream	3	5	4	2	2	2	1	1	4	3
CTGAAAGTCTGTAGCT	ref_3262_upstream	54	93	78	74	80	39	93	43	82	39
CCTCTCCGTAGCTCCG	ref_3262_upstream	16	41	20	28	36	17	33	14	24	21
GAACTCGGCCGTGTAA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
GTACGCACGGTTGCGT	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
GTCATAAGGTTGGTTC	ref_3262_upstream	23	26	25	24	19	14	27	15	17	17
TTTCATTCATATGGGA	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTTTGGTATTTAT	ref_3262_upstream	17	22	24	20	16	11	29	10	31	25
CACTCGTCTCCTCACG	ref_3262_upstream	3	9	3	6	5	4	7	2	10	5
GTAAGTTGCGGGACTG	ref_3262_upstream	25	32	21	29	24	23	24	31	12	19
CATCGGCACCGTGCTT	ref_3262_upstream	2	9	4	3	6	5	9	5	17	6
TGCCCCCAATGCAACC	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTGGTGTGTGTT	ref_3262_upstream	1	5	8	3	3	6	8	2	5	7
TCATACACTAATGTTC	ref_3262_upstream	39	43	50	25	65	39	40	37	49	40
GTTTGTCGCACTAATC	ref_3262_upstream	60	93	60	76	70	51	73	63	76	47
ATGGGGTCGCACCTAT	ref_3262_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTTGTACCTCAA	ref_3262_upstream	10	20	20	9	12	17	17	9	19	16
CCCCCTCTCTGTTTCT	ref_3262_upstream	35	56	39	28	68	36	66	31	65	22
TATCTTTCGTTGCTTT	ref_3262_upstream	55	40	64	46	44	41	45	43	49	41
GACGACCACCGGGAGG	ref_3262_upstream	97	96	128	113	95	91	118	90	108	85
TAAGCGCTAACTAACG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GAGACTGTCATGGGAA	ref_5939_new	29	58	58	35	48	27	64	37	58	46
AGTCTTTTACAATATC	ref_5939_new	17	20	21	15	28	11	30	16	40	14
AACAGAATAGCCGTTA	ref_5939_new	4	9	5	1	6	4	3	2	9	8
TCTTCCGCATCTGAAG	ref_5939_new	1	1	2	4	6	1	2	2	1	1
GTCAGATGGCGCCGGG	ref_5939_new	26	23	26	31	29	22	22	13	23	24
ATCCGAAACCAGACAG	ref_5939_new	3	5	3	0	4	2	10	4	6	3
ACTCACAACCACACTT	ref_5939_new	4	10	2	5	15	1	11	2	11	3
GTTATCACTGTAGGAA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TTTTAGCATAAACTCG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
AGCTCCTTATTAGATG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
CCGGCCTGCTACGATC	ref_5939_new	0	0	0	0	0	0	0	0	0	0
AGGCGCACGATACATA	ref_5939_new	1	3	0	1	4	0	6	1	8	3
TACATGTCAACCTTCC	ref_5939_new	20	25	34	31	58	28	31	22	45	26
ACACGCGCCTAAACTC	ref_5939_new	15	26	29	19	25	16	26	14	27	13
CCTTTTTTTAAAACCG	ref_5939_new	7	10	8	5	12	8	17	6	18	11
TCATTGTATTGTACCT	ref_5939_new	3	15	13	2	17	5	8	2	9	3
TTTCACAGATGCCCTC	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TTGCGGCGCATGAATG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GGCACCGAGGCGAATA	ref_5939_new	22	17	18	16	25	11	17	12	33	11
ACTGCGTCAATTGCTG	ref_5939_new	16	61	39	14	51	26	50	21	57	18
CCGATCCAGCTATGGA	ref_5939_new	18	29	24	23	39	23	41	25	33	23
CCAGGTCCACGAGATG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
AGCTGTTTTTTAGTGA	ref_5939_new	23	26	19	30	34	14	34	19	32	17
GCCAAATTGTCATCTT	ref_5939_new	12	33	25	15	36	14	32	11	46	5
AAATCACTAGCACAGC	ref_5939_new	0	0	0	0	0	0	0	0	0	0
CCGATATGATGCTGAC	ref_5939_new	17	25	12	6	24	14	35	14	32	18
GTATCATACGACAATG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GTTTAGTAAACCTGAA	ref_5939_new	40	68	30	43	68	49	51	31	69	46
TCACTAGAGACATATA	ref_5939_new	23	23	11	17	42	16	36	14	39	17
ACCACTGATCGTGCAT	ref_5939_new	27	38	36	33	46	30	41	20	50	40
CTAATTTGTGAGCTGC	ref_5939_new	9	21	11	8	14	8	8	5	10	11
TATAAAAGTTCGGTTG	ref_5939_new	7	8	5	0	5	2	7	6	9	2
TATGTACGGAAGGTCC	ref_5939_new	0	0	0	0	0	0	0	0	0	0
ATAGCCTACGTTGTGG	ref_5939_new	105	130	94	93	126	81	134	67	144	72
CATACCGCTCTTTGTC	ref_5939_new	9	9	7	6	15	2	17	7	15	5
TAAACTTCTGACGATA	alt_5939_new	19	17	22	25	24	13	17	11	31	10
ACTGGAACGATTTCCT	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GGCCGGGTCGATATCC	ref_5939_new	59	81	68	59	95	36	83	47	103	54
CGCGCTTTCGACTATG	ref_5939_new	75	143	90	91	148	63	164	97	160	81
AACGCCTGGACAGGAT	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TCGCTTATAAGACTAG	ref_5939_new	3	4	1	5	9	4	5	1	9	7
TGATCAATATGCACAG	ref_5939_new	18	37	23	15	29	28	27	24	34	18
TTCAAAAAGGATATCT	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TTAACGCCCCTTTGTC	ref_5939_new	89	94	103	92	120	81	142	85	99	66
TATCTCTATGATGTTA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TCACTTTGAGTTAGAC	ref_5939_new	40	76	28	30	78	40	76	30	69	31
GTCTAAGGGAAACGGG	ref_5939_new	4	10	8	10	15	6	13	4	11	4
AGTAGCCTTTCTATTT	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GGTTCGTGGGCACCTG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GTAATTACGTTCGTAA	ref_5939_new	18	20	13	10	19	8	28	9	23	12
AATTATCTTGTGCTTG	ref_5939_new	31	80	45	39	57	49	84	40	70	50
TTTAATGTAGTTGTCA	ref_5939_new	11	13	7	2	10	4	11	3	23	5
CCCGTCGCCGCTAGGA	ref_5939_new	8	16	11	7	21	7	16	6	26	7
TGTTACCCTTTCAGCA	ref_5939_new	8	18	15	11	15	8	21	11	21	5
AGTTACAGGGCTGTAT	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GTTTGTGACCTTTCAC	ref_5939_new	38	50	29	53	63	41	64	30	70	32
GCGCGCGTCTAGAACA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
GACTCAGAAACCTGCA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TTGGTCTTACCGCATG	ref_5939_new	17	46	24	21	72	22	47	21	79	25
GTTTTGTCTATTGTTG	ref_5939_new	8	16	14	15	15	11	27	6	17	15
CCGGTCCGGTATTAAC	ref_5939_new	0	0	0	0	0	0	0	0	0	0
CGTGCCCCAGGTCTGA	ref_5939_new	1	2	2	1	0	0	3	1	0	0
TAGGTCCATTTGGACA	ref_5939_new	1	2	1	1	4	2	2	0	6	4
TTTGTGCACTCTTAGA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TTTCCTTTATATCGCC	ref_5939_new	14	25	13	19	31	15	25	16	20	9
GCGCATCTATACTACA	ref_5939_new	6	22	16	8	13	7	20	8	14	9
AAGTAATCTACGTTGG	ref_5939_new	26	26	30	34	29	16	32	22	32	21
TGCTCCTGTGTACCGC	ref_5939_new	4	16	4	8	20	10	14	4	17	8
GCCATCCAGTTGTGTG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
CACGGATTGGAGTAAC	ref_5939_new	17	24	16	15	26	23	32	15	28	19
CTTCTTAAGCCTTGTC	ref_5939_new	3	10	8	11	13	4	9	4	13	6
AATCCTCGGATCACCG	ref_5939_new	51	52	52	59	54	33	54	52	78	39
GTCTTTTCGTCTCGAG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TAGTCCATGTGTATCT	ref_5939_new	32	66	48	25	66	32	71	32	79	17
AGTATTGCTGTCGTTG	ref_5939_new	49	106	65	58	91	59	89	46	108	38
GGTATAACGTCTGTGG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TCTGGTTATAGAGGCA	ref_5939_new	19	46	25	27	42	19	35	21	37	17
CTCAGTTTGTGTTCAA	ref_5939_new	8	10	9	7	8	8	18	7	15	4
TTCTTTATTGGATCAA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TGGCTTGGTACATAAA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
ATAGCCTACGTTGTAG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
TGGACTCCAGCTCCCG	ref_5939_new	0	0	0	0	0	0	0	0	0	0
ACAATCTCCTTGGATC	alt_5939_new	19	24	14	15	30	15	25	8	27	11
ACGTACGATCTTCTAA	ref_5939_new	0	0	0	0	0	0	0	0	0	0
CCTTAACGACGAGTCT	ref_5939_new	9	17	6	9	12	2	14	12	11	4
CTACATGCACCCGGCC	ref_5939_new	0	1	2	0	5	0	1	1	1	1
TTTTATCGGTCTTTAC	ref_5939_new	16	16	13	10	13	17	14	12	24	13
GACGTTGGGGGTACTT	alt_5336_reverse	34	50	36	28	35	22	40	29	46	21
GTAGGCTTGTAACCTA	alt_5336_reverse	3	11	2	1	10	5	4	4	9	3
GGGTTTTAAGGGGCGG	alt_5336_reverse	4	7	9	6	7	3	1	3	10	6
GCCAACGTCGTAGATG	alt_5336_reverse	14	9	10	8	7	5	15	11	14	12
TCACAGCTTGATGCAA	alt_5336_reverse	40	61	44	44	64	45	62	42	75	54
CTTGTGTTGGATTTGC	ref_5336_reverse	56	60	73	56	72	48	92	54	88	43
GATCGGTGAGACACTT	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGCTTAAGCATAT	alt_5336_reverse	16	27	23	13	13	9	16	16	26	13
TTTGCAATTCCACAAT	alt_5336_reverse	29	30	41	19	26	30	41	33	34	15
TTTAATCGCCTCGGCA	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GTGTAACCAAGTCAAT	alt_5336_reverse	14	12	17	5	9	8	28	13	25	17
GTTGTTATCGATTTAG	alt_5336_reverse	164	162	179	124	191	156	154	125	177	144
TATGTTAGACTCGAGG	alt_5336_reverse	28	38	32	36	41	34	44	25	58	36
AGAGTCGTCACCCGAT	alt_5336_reverse	5	1	2	4	5	1	3	0	7	2
CAAGGAGCTTCATTCT	alt_5336_reverse	35	38	54	51	44	41	39	40	42	35
CACGTAGTACGGATGA	alt_5336_reverse	33	40	46	38	39	43	40	41	45	35
CCTTATGCCTTCTCGT	alt_5336_reverse	2	6	5	5	4	2	6	4	4	4
TGCATAAGCACCAGGC	alt_5336_reverse	2	6	7	10	5	7	16	12	8	11
CCTACGAAATGTGCCG	alt_5336_reverse	32	33	39	23	33	16	38	21	35	26
TCGTATTGTCCAATCC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCTTGCTCAGGCT	alt_5336_reverse	23	33	19	28	19	17	19	18	26	12
GTTTATAAGCTGGTTT	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTGATTCGTATGA	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
CGGACCTACTCAAGAC	alt_5336_reverse	11	19	17	9	22	8	20	11	15	7
TTTCGTCTTTCCGAAC	alt_5336_reverse	96	112	107	105	126	76	115	77	119	81
TGCGGACAACCCAGCT	alt_5336_reverse	69	82	91	60	73	53	88	70	118	67
CTACGTCATTATTCTG	alt_5336_reverse	23	25	26	27	33	22	36	20	29	18
CCTGAGGCCATGCTCT	alt_5336_reverse	42	72	43	39	56	52	67	45	69	50
CATCCTAATGGCGAGG	alt_5336_reverse	17	15	8	12	11	17	16	5	13	5
TGTCGTCTGTGACCTT	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCTCCAAGCGTC	alt_5336_reverse	139	165	173	141	177	135	193	108	168	125
TGATCCCCGCTGTCGC	alt_5336_reverse	1	0	0	3	4	4	2	0	2	0
GACATTCGCCTATTAT	alt_5336_reverse	15	21	19	31	32	23	20	17	20	15
TATCTAGATCCCGTGA	alt_5336_reverse	49	48	57	31	44	61	42	32	71	39
TTGCTATCAAAAAAAC	alt_5336_reverse	40	49	35	33	41	40	36	27	39	37
CCTCACGGTTCGTTGG	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
AGGACCGCGGAATGAC	alt_5336_reverse	59	75	67	82	93	83	101	71	93	72
TCGTGTCATTGCGGGC	alt_5336_reverse	37	61	26	31	98	32	97	21	90	16
TTGGTACGCGCGTATC	alt_5336_reverse	37	14	22	16	22	20	22	14	15	15
AACCAAGGGGTTCAAC	alt_5336_reverse	11	4	9	11	13	5	16	7	9	5
GCTTAATTCGGCCATC	alt_5336_reverse	66	65	60	45	51	56	54	63	68	60
CTGTCTTCTTTTCTTC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
CGGATGGCTCTGGGCG	alt_5336_reverse	43	46	48	53	44	45	51	42	63	50
AGCACCCGGGCCGGTT	alt_5336_reverse	7	9	10	19	18	16	11	16	15	16
GCAGCGGCCGATTTTT	alt_5336_reverse	11	13	6	4	4	4	5	4	4	3
ATATCAGGTACGTTCC	alt_5336_reverse	36	47	33	26	62	27	52	29	59	17
AGTGGTCTTGTTCATA	alt_5336_reverse	10	14	16	9	12	13	15	8	17	16
GTCTGGATTTGCTACG	alt_5336_reverse	18	24	23	13	30	12	19	22	22	26
TCTTACAAGGTGGGAC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGTCAAGAAGGAC	alt_5336_reverse	28	32	39	25	36	37	36	22	39	29
TGTTTTTAACTCCTCG	alt_5336_reverse	15	19	27	12	21	21	14	20	22	16
ACTCTCTCTAGGAAAG	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
ATACATCGCAATTGAA	alt_5336_reverse	4	4	2	5	4	2	9	6	2	6
TAGACAGAATGGCATC	alt_5336_reverse	5	8	7	12	12	12	17	9	17	6
GTTTCGCCTTCTTGTT	alt_5336_reverse	15	19	15	17	15	12	34	23	11	17
AGTCCTCGTGGTAACT	alt_5336_reverse	29	35	55	41	62	37	46	27	45	37
AATTCAGATTGTACTT	alt_5336_reverse	16	33	22	18	37	12	23	19	25	15
CGTTTGTTGGATATTT	alt_5336_reverse	2	3	9	8	3	11	7	4	9	9
GCGGGGGGCTCCCTAC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTTTCCTTTATGC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
ATATAGTGATGATTCA	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
CCACGCAATGACGGCT	alt_5336_reverse	114	113	137	97	120	88	117	97	93	75
GATGTTCTTGCTTAGG	alt_5336_reverse	3	7	5	4	2	2	3	2	3	1
TCTCGAGATTTTGCCC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGCCCCCCTCTGG	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
TAAGAGGGGCCATAAA	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
CTATGGAATTTTTGGT	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTATGTCATTGTA	alt_5336_reverse	2	2	1	0	4	3	0	0	1	1
TTGGTCAACCTTAGAG	alt_5336_reverse	10	30	13	15	30	17	22	16	26	5
GGTAGCTCTTGTAGTA	alt_5336_reverse	9	6	14	9	8	14	13	14	9	6
AGCCCCCCTTCCGGAT	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
ATCTATACGTGTATTC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
CCCAAATGGTCCGCTG	alt_5336_reverse	10	27	18	9	18	8	31	12	27	16
GTGCCGGCTTCTGTTT	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCGTTTCCACATA	ref_5336_reverse	133	206	179	147	202	131	222	155	248	111
CGAGACTTTTCGCGCA	alt_5336_reverse	17	22	35	24	44	32	24	27	25	33
GTTGTGTATTGATTTC	alt_5336_reverse	21	35	28	21	34	22	41	29	34	24
CACGACCGTTGTTTTC	alt_5336_reverse	0	5	1	1	6	4	2	3	2	0
GTCATTAAGGATAGGC	alt_5336_reverse	17	15	22	14	27	12	15	10	19	9
TTTTGAGTTTTTCCTG	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GGACGTTACTCGTAGA	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GGGATCCCGCCATGTC	alt_5336_reverse	10	4	17	12	18	15	11	12	11	15
GTTAAGTATCTATTTT	alt_5336_reverse	20	12	21	23	23	15	26	13	16	20
TGACGTATTTTCTGTA	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
TCTGAAGTTACTCCGG	alt_5336_reverse	4	4	7	7	6	7	6	6	9	6
CGATTTCCGTGATTTT	alt_5336_reverse	42	45	34	36	42	40	51	38	59	32
CACGCATAAATCAATG	alt_5336_reverse	26	15	43	25	24	23	24	31	31	26
CTGGGTCATAGCGTGG	alt_5336_reverse	32	23	19	18	23	10	35	15	31	23
GTTATCTGATGCGTAA	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCTATGCACCTTC	alt_5336_reverse	10	12	9	13	25	9	20	12	21	8
TCTATAGTCCTTTACA	alt_5336_reverse	16	16	12	16	15	15	22	17	21	9
TCTGTGTGCATTCGTA	ref_5336_reverse	5	4	4	10	4	2	7	5	5	4
AGCCTTAAACTTTAGG	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
TACTCAGGTGTGGGAC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
CTTATCCTGTATGGGC	alt_5336_reverse	42	29	30	35	46	20	56	30	42	34
CCTACTCAAGACCGGC	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCCGCTAATTGA	alt_5336_reverse	30	24	12	21	17	20	29	15	23	11
CGTGAGATTATAGTCT	alt_5336_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAGCCTGTGTAGC	alt_5336_reverse	30	56	32	23	32	34	36	22	46	21
CTCAGATTAGTTGGAG	alt_5336_reverse	3	4	0	4	5	3	5	1	2	0
ATTGTTAAGCACTTTC	alt_5336_reverse	24	28	30	36	29	19	34	23	41	24
CCTCCCATAACGTCTA	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
CGTCGTTTATTTCCCA	alt_4506_missing	9	22	6	3	13	5	17	11	17	8
TTCGTGGAGGCCACTT	alt_4506_missing	32	46	34	35	60	39	54	31	52	34
TCCCATATGCTTACTG	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
CACAGTAATCCAATTG	alt_4506_missing	9	6	8	12	11	11	16	9	14	9
TACGGTCCTGGATGTA	alt_4506_missing	41	50	28	30	55	30	64	28	58	30
CCTGATTTACCTCTAC	alt_4506_missing	12	11	12	12	29	18	26	10	17	12
ACTCTCGATTCCTCGA	alt_4506_missing	19	26	36	20	46	27	29	17	36	30
TTCTAGGCCCTAGCAG	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
GACTCCTCCCTCTTTC	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
ACGAGGCACCAGCCAG	alt_4506_missing	0	5	2	0	0	2	3	2	4	0
CGGTTTTGAACCTAAC	alt_4506_missing	2	3	2	4	3	4	6	2	9	2
TTGGTACCGAGCCGCC	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
TCTATAATGGATACTT	alt_4506_missing	32	66	41	39	60	40	58	26	56	48
GTTACGGCCTGATTTA	alt_4506_missing	49	61	63	45	81	51	64	43	81	44
CGTAGGCGCAGATATT	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
CGATACGGACCGCTTT	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
TGAAATCGACGGTGAT	alt_4506_missing	2	4	3	1	4	0	2	2	5	0
TGGTGATACGGGAGAT	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
AAGTTCCGCGATTGCC	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
GCGCCTGGTTCTGACC	alt_4506_missing	11	39	16	21	20	25	46	5	37	18
TTCGACCCCCCTTTTA	alt_4506_missing	3	13	6	4	27	4	21	1	24	6
TCTTTGACTCTTGCCC	alt_4506_missing	3	3	1	1	4	4	8	2	4	2
TTGCATGTATTACCAC	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
TGTACTGTATTATCCT	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
TTCCTATTGAACTCTC	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
CACTTACATGGTTTGT	alt_4506_missing	73	97	83	58	112	75	106	70	128	55
CAGGCTTTTACCTCTC	alt_4506_missing	1	12	1	1	10	3	10	4	13	1
GCTGTTACCGGACAAT	alt_4506_missing	4	9	9	8	18	5	11	2	5	2
TCTTGTTTAGTTGTGG	alt_4506_missing	6	12	13	16	12	5	9	12	10	7
TTCGAAAGGCCCCCTA	alt_4506_missing	1	2	1	0	1	0	0	0	3	0
CTATGGGCATTGCTCT	alt_4506_missing	1	11	8	7	10	5	6	4	10	4
TCACTTTGTCTTCAAG	alt_4506_missing	0	0	0	0	0	0	0	0	0	0
ACCTCAGACTTATCCG	alt_4506_missing	3	5	5	5	4	2	2	5	8	2
GTCTATGGTACTCCGC	alt_5617_new	15	27	28	19	33	23	38	15	32	6
GCGCCTGCACGGATCA	alt_5617_new	108	97	88	94	107	83	105	83	103	64
GATAATAATAGAGTTC	alt_5617_new	8	9	21	13	15	14	22	16	14	8
AGAGACCACAAGGACT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GAGTTGTGAGTTTACA	alt_5617_new	2	2	1	5	3	3	9	4	9	2
GGGCAGGCTGTATTGT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TTCGTAGCCCGGTGGA	alt_5617_new	10	28	18	20	23	16	18	11	20	12
CTACCTGCCCAAACCG	alt_5617_new	13	16	21	16	8	14	29	12	21	10
TGAAGGTTACGTTCGG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TAGACACACAGATCCT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GTTAAGCGGGTCTAAG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GGGGCTCGCAACCCAC	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TTCTCGCGTTAAACCT	alt_5617_new	32	41	40	36	51	25	51	28	37	30
TCTTTCTTATTTACCT	alt_5617_new	13	19	12	10	13	19	21	21	19	11
GGCGTTCTGTCTCTGA	alt_5617_new	32	43	58	51	66	41	54	34	56	38
TTGATTCTATTACGTA	alt_5617_new	25	37	32	26	48	41	34	23	42	36
TACCAGCTTCATGTTT	alt_5617_new	17	13	15	6	18	15	21	8	19	9
TCAGTATACATTACTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TGAAGTTGATCCCTCG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TCCCTCTAGTGTCCAG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CACTCGAGCAGGGAGA	alt_5617_new	62	109	98	68	88	84	94	74	96	67
TGTGGTGAGTGGATAA	alt_5617_new	20	25	16	22	18	17	24	12	28	15
TCTACTAGGCGAATCT	alt_5617_new	2	7	1	4	8	2	4	1	3	0
TGCCCATTGTGTCGCT	alt_5617_new	1	8	12	4	8	4	10	6	14	6
TGGGACCTTCATCTTA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TGGGATCCCCATATAC	alt_5617_new	4	3	8	2	4	1	8	3	9	3
TACCCATGTGCTCCCT	alt_5617_new	10	17	18	11	17	11	19	12	14	14
CTACTCATTTTGCACA	alt_5617_new	10	10	15	23	14	9	21	14	15	12
TATACTAAGTCTACAC	alt_5617_new	0	0	0	0	0	0	0	0	0	0
AATTCGACACCCCGGT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
AGCTTGTAGTTTCCGG	alt_5617_new	13	19	19	15	26	14	30	16	17	13
TGGTTGCACGGCGCGA	alt_5617_new	1	1	1	1	0	0	0	2	1	0
GGTTCGATATAGCTTA	alt_5617_new	12	20	16	12	28	17	23	15	20	16
CGCGGATTTGCTGAAA	alt_5617_new	51	58	62	37	52	40	62	49	60	47
TTTTCTAGGTAAAATA	alt_5617_new	38	50	49	57	54	23	51	36	59	47
GTTATTAAGTCTTGAT	alt_5617_new	11	25	15	18	20	13	22	10	17	14
CCGTTGCATTTATACG	alt_5617_new	31	50	48	31	79	40	61	31	55	36
GTACCTTGATACATGA	alt_5617_new	81	90	95	68	70	62	92	59	101	63
CATGGGCTTCTTACGT	alt_5617_new	3	2	3	3	3	4	1	5	2	2
CCGCTTGTTCTCTTAT	alt_5617_new	4	11	7	6	11	4	11	2	9	4
CCATCTTTGTGATCAA	alt_5617_new	27	30	41	30	47	19	41	22	42	31
AGCGCCCTTAAGGGTC	alt_5617_new	44	51	48	38	62	21	58	42	66	30
TGCAGCTTGTTTCTCT	alt_5617_new	22	35	13	18	16	11	12	8	17	10
GCCTGTCAAGCTCTAG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
AACCGTTCTATTGACT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GGGTTTCGGCGTAATT	alt_5617_new	40	62	34	29	56	26	42	35	53	23
GTCCGGCAGTTGCGGT	alt_5617_new	10	5	3	1	3	8	4	7	4	3
TTGTCTGCACATCTCA	alt_5617_new	15	19	26	18	23	11	27	16	20	12
AGAAGTTTAGTTTGTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ACTGATTGGATCTTTA	alt_5617_new	38	38	37	41	54	32	48	46	54	52
CTAAGTTCTTTCGCCC	alt_5617_new	7	8	11	7	12	6	6	7	8	6
ATTATAACTTGACCCC	alt_5617_new	2	2	9	4	0	5	0	8	9	4
CGGCCAGGTGTACCTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ATTGAGCGTGTGACTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GTAACGCAAAGATCAA	alt_5617_new	4	9	2	1	1	3	0	4	3	2
GCCAAGCATGCGTAGC	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GGTCATGTTGAATTTA	alt_5617_new	68	71	56	74	85	75	92	56	90	54
TTCCTTTGTCAACATT	alt_5617_new	28	30	24	27	33	24	37	23	33	27
TAAGAATAATCGTCTC	alt_5617_new	35	43	52	23	32	40	37	17	37	20
AGTACAGCCATACCTA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TCATCTAGGCGTTTAT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CGCGATCGAACGCGAA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GATTCTGCAGTCATTC	alt_5617_new	24	39	33	20	27	33	39	28	30	16
TAGAGAACTCATCTAG	alt_5617_new	15	17	19	11	18	10	15	11	17	8
GCTTCCTCTAATCGGT	alt_5617_new	12	14	8	14	20	11	16	9	16	6
GTTTCCCTATCAGAAC	alt_5617_new	29	25	38	19	43	11	56	30	45	26
TGGCTAAATCTTCCCC	alt_5617_new	54	53	36	50	63	34	59	40	60	33
TAACGTGCTCACCTTT	alt_5617_new	7	33	12	9	27	7	27	6	25	9
GTCGACAGGTCACTTC	alt_5617_new	6	9	10	9	14	5	14	3	13	2
TATTATGCGTTGGCAA	alt_5617_new	28	46	34	33	35	28	40	35	53	28
TCGCGCCCACGGGTCT	alt_5617_new	9	9	9	5	7	12	13	10	10	3
AGAGCGCCTCCATTCC	alt_5617_new	24	30	34	27	22	23	25	17	25	15
AGATCATCTGCCATTA	alt_5617_new	27	25	36	32	32	37	40	23	41	19
AACAAAAGTATAGCTT	alt_5617_new	26	31	25	22	38	23	28	9	24	22
CAGTGCGATATCTTCA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ACGTAACGGTTTCATT	alt_5617_new	4	9	2	8	5	0	10	5	7	6
CTAGCCTTTGCCCATG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TGAAATTGTGCATGGT	alt_5617_new	17	23	27	13	22	16	29	12	30	14
TCCTGTCGCGCGGATC	alt_5617_new	12	12	10	7	18	8	19	8	14	13
AATGGGTGTTCGTGGA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CTCCGGTGGCATGGAT	alt_5617_new	36	36	34	19	20	16	42	22	39	20
GCCCCCGCCTTGATCG	alt_5617_new	0	0	0	0	0	0	0	0	0	1
CGGCACTCCTACCAGT	alt_5617_new	15	27	15	12	21	17	20	8	24	9
CCGAAACCGTGTCACG	alt_5617_new	19	15	15	19	35	16	34	21	24	11
TGCTCTCTTTCCTGTC	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GAAGTCTCCTCATTAT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TTACGTGCCAACTCGA	alt_5617_new	25	38	26	17	23	21	25	25	27	24
AGGTGTGCACCCTTTT	alt_5617_new	10	17	7	9	21	3	17	4	6	8
CGCGTGGACTTTATTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ATTGTTTTGTCGGATT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CCTCGTAGATGTCCGG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ATATTGTGACTGGGAA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CTTCCAGATAGGCCAG	alt_5617_new	25	43	34	16	36	22	37	25	39	17
TGATTTATATTCGATT	alt_5617_new	199	189	225	211	225	186	213	168	211	171
CCTGTGGAGTAGTAGT	alt_5617_new	9	14	12	12	13	13	28	13	26	13
TGTGTCCATAGGCACG	alt_5617_new	79	80	76	65	98	63	89	52	93	62
TCGATGTGTGGATAAT	alt_5617_new	41	48	22	28	48	24	50	29	50	32
CGCCTGCTGCAATCTG	alt_5617_new	6	12	12	7	11	5	13	4	8	4
CCAGGGAGGTTTCCTC	alt_5617_new	4	5	4	1	10	2	6	0	4	1
GACTCTTATTCGCGTA	alt_5617_new	9	22	12	10	21	12	14	6	19	10
CAGCACGACTTCACGT	alt_5617_new	57	91	93	65	86	62	82	63	108	51
TTTCAGGGGGTGGTAT	alt_5617_new	55	73	66	41	62	45	57	58	76	39
TGCTAGTGTAGCGCCA	alt_5617_new	31	51	48	30	64	28	55	48	71	35
GCCCCCAAACACCTAT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
AATGTTCTGATCACCT	alt_5617_new	15	11	23	17	21	21	19	15	10	24
GGAAGGTGGTGGTAGG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TGCATCCAGTCCTATG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CGACCGTTGGTGGCGC	alt_5617_new	2	3	0	1	2	5	4	1	2	0
TTAAGTTTCCGCCTGG	alt_5617_new	41	61	54	38	50	39	56	35	57	40
TTTTATCCGCACAATG	alt_5617_new	5	11	8	13	4	4	21	6	9	9
TACTCTTTAGGCGCCA	alt_5617_new	53	60	55	56	69	57	66	50	86	58
TAAAACAGTTGATCCG	alt_5617_new	28	48	49	28	41	27	49	30	37	41
TAGAACTAGAGCGGCA	alt_5617_new	81	90	96	105	77	83	105	79	124	81
GAGTAACACTTCTTTA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GAGGTAGCCTCGACAT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TACTTACGCCCCAGTG	alt_5617_new	7	24	11	9	26	6	22	12	27	9
AGATACAGGGGGGGTT	alt_5617_new	22	20	20	30	25	18	26	9	30	14
CCGACCCTTAAGGCGG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CTATTCGTCGCCTTCT	alt_5617_new	4	11	13	4	7	7	1	11	4	2
TCTATCTACTGGAGTC	alt_5617_new	16	33	24	21	38	32	39	33	47	17
CCGAGTGGAGTCAGAT	alt_5617_new	45	87	49	45	106	36	83	37	107	31
ATGCAAAGCCTCAACT	alt_5617_new	16	25	32	33	32	30	34	19	55	16
TAAGTACCTTGCAGAA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
AGATGCGTGTCGGTAA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TATTCGCGCTCAAGTA	alt_5617_new	2	4	2	3	7	2	1	2	5	2
ATTTGCGTCCTCTTGT	alt_5617_new	10	3	6	8	12	2	7	4	6	2
TTTGGCGCCTCTTATT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CGGCTCGGGGCTCAGC	alt_5617_new	0	8	0	0	0	1	0	0	0	0
CTAACCTTCTTGTGTC	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CTGTAGCAACATTCCT	alt_5617_new	122	166	119	98	185	120	212	116	199	106
TTATGGCTCTGATACA	alt_5617_new	16	24	39	8	26	32	26	22	25	21
TATGCTATTCGTCTCG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TATCGGCGATCAGGCT	alt_5617_new	11	16	11	9	15	14	15	12	13	10
GCATTTTATAATGGAC	alt_5617_new	20	11	10	13	19	10	14	13	14	12
CCCTCACGCTGGCCTT	alt_5617_new	10	27	18	17	34	9	26	14	25	9
GTGCCATAAGTTAAGA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GAGAGATTCAGATGTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ATTCGGAGCTTTTACG	alt_5617_new	16	25	21	15	22	20	22	23	23	12
CACATTCCCTTAGGTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CCTGCTTGCACATCGG	alt_5617_new	8	6	6	10	8	4	8	7	12	6
TCTCGTAATGCTATGT	alt_5617_new	131	166	145	117	151	124	146	96	160	124
AAGAAGCCACTAAACT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
AGGAATCCCTCAACCG	alt_5617_new	19	27	25	22	35	33	51	27	40	27
ATAGTATAGCTATTAG	alt_5617_new	49	46	38	40	54	43	50	26	40	31
GTTTAGTATAAAGGAA	alt_5617_new	10	8	10	9	19	3	5	10	4	4
TCCATAACGGTTTAAG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
AGTTACCCTCGTTCAA	alt_5617_new	14	24	10	12	12	13	17	5	18	6
CTCCGGAAGCCTCAGA	alt_5617_new	18	39	23	17	36	22	36	17	28	18
TGGACGTGCGGTAATC	alt_5617_new	66	107	117	88	119	105	133	74	125	84
TACGCTCTGTACCCGC	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CGGAATGCGGCAACTG	alt_5617_new	14	24	37	27	32	21	26	25	37	25
GTTTATGGGTGCCGAT	alt_5617_new	31	36	27	36	37	37	44	26	36	27
ATACTACCCTACTCAA	alt_5617_new	7	6	8	6	5	5	5	7	9	4
TATGGGCGATCGTAGG	alt_5617_new	61	96	86	67	91	76	74	49	88	54
AATGCTGGCTCTACCA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TTCACGGTTGGCGTTT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ATTATTTTGACATAGA	alt_5617_new	78	96	109	81	111	92	95	70	89	67
CTACCGGCTTAGTGCT	alt_5617_new	8	8	5	8	14	12	22	5	14	7
TTCCTTGGGGTGCTCG	alt_5617_new	5	6	7	2	8	14	14	3	5	6
TCGGTTAACGTGCGGT	alt_5617_new	0	0	0	0	0	0	0	0	0	0
CTGTTGCCTCCAACAG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GCCACCGCCTTGATCG	alt_5617_new	137	264	173	178	257	127	248	164	246	133
AACTCGGAAACCCAGT	alt_5617_new	7	10	7	12	12	7	13	10	10	4
CTTTTGCATTGGGCAG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GTGAACTGACACGTCT	alt_5617_new	19	24	13	21	23	14	26	12	24	15
TAGTGGACTATTTGCC	alt_5617_new	12	15	14	25	23	10	23	15	24	7
TAATACGATAAGATGC	alt_5617_new	50	77	76	64	51	54	71	49	50	65
CAGGCCGTGATCCCGA	alt_5617_new	5	15	6	2	27	3	14	3	11	3
CCGTGACACAAAATAC	alt_5617_new	44	53	46	44	64	56	51	41	65	38
TCTCCAGCTCTCTGAT	alt_5617_new	56	69	50	52	83	39	86	49	83	61
CTATAAACGGTCTTCT	alt_5617_new	73	76	75	51	93	54	82	54	64	44
CGCGGGGGCGATCGCA	alt_5617_new	9	10	8	8	16	18	16	14	6	7
TGGGTTTGGGTTATCA	alt_5617_new	194	277	218	216	231	183	284	181	275	174
AACATTTACTTACGTG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TAAAGCTCCAAGTTCA	alt_5617_new	40	49	47	28	47	40	48	30	42	25
TAGAAGAGAGTATAGG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
ACCGAGCGATCGTGCG	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TCCCGGTACGGACGGG	alt_5617_new	32	50	48	31	54	34	53	34	47	30
CGGCCTTTCTGCTCCA	alt_5617_new	70	151	67	58	163	59	153	46	147	33
TCGCTGCCTTACTCAA	alt_5617_new	13	23	24	21	23	9	24	22	27	14
CCTTCGATGGTTACTG	alt_5617_new	22	32	32	20	44	14	35	35	51	25
CCCTCAAAACTCAGAG	alt_5617_new	23	27	22	20	19	19	19	16	24	16
GCTTGGTTCAGCAGCA	alt_5617_new	3	10	15	7	15	6	20	11	11	11
TCAGAGCAACACGGTA	alt_5617_new	0	0	0	0	0	0	0	0	0	0
TCTCTACTGTGCGGGG	alt_5617_new	0	15	4	9	12	3	5	4	6	4
TCGGTGAGGCCTGGTC	alt_5617_new	0	0	0	0	0	0	0	0	0	0
GCATGTGCCTCCGCAC	alt_5617_new	14	35	32	30	29	28	28	22	23	22
TTTTTATTAATATACG	alt_5617_new	20	42	39	23	26	15	48	14	27	15
CTGCTTTTCGATGAGG	alt_5617_new	1	5	9	5	12	3	4	8	11	8
CATAAGGAGAGATGTT	alt_5617_new	37	35	31	21	28	20	28	18	31	24
CGGTTAAATACTTCTG	alt_5617_new	37	46	24	24	68	16	48	29	63	29
ATCTTGTGTTGCGCTC	alt_5617_new	15	16	27	22	14	14	28	18	28	21
TGGTCCGGACGTCGCC	alt_5617_new	7	10	12	8	14	12	16	10	8	6
TCGTTGATACTATTGG	alt_5617_new	4	9	12	11	20	12	25	8	17	9
ACATTAGTCCGGCTTT	ref_3478_upstream	70	69	70	67	68	59	67	51	80	52
CCCGCCCTAACCGAGT	ref_3478_upstream	12	11	9	15	15	12	14	5	12	8
GCAATTTAAACTTTAG	ref_3478_upstream	10	14	17	16	12	15	21	17	14	11
TCATTGTATCTTTTCT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTTCCTGTGACAA	ref_3478_upstream	89	87	89	93	108	72	97	85	117	78
GGCTCGGCGGCGGCTT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TGATACTTGTCGTTAT	ref_3478_upstream	15	13	28	23	27	20	22	18	17	20
TGTTACAAATTTGTGG	ref_3478_upstream	14	12	3	9	14	7	10	9	10	2
ATGTTCGGGCTACATC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAGGTAACACGTC	ref_3478_upstream	33	13	26	29	24	17	27	15	34	15
TCTCTTTTACGTCCTC	ref_3478_upstream	33	39	47	35	28	37	46	21	43	26
AGGCACAAGGGCATGA	ref_3478_upstream	105	119	140	115	95	109	111	102	123	92
TTCGTCTATATCAAAT	ref_3478_upstream	17	15	16	15	37	14	22	28	32	23
AACACGAGGAATTCAC	ref_3478_upstream	12	14	14	15	13	12	15	12	12	9
TGAACGATAAAACCCC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CAATCGTTCGCTGGGA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCTAGAAGTGAAC	ref_3478_upstream	35	36	37	40	29	26	38	28	40	33
TCCACGCTCCCTGGGT	ref_3478_upstream	13	32	10	11	33	10	26	17	29	10
AGCTCCAAGTACTATT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCTTGTGTGACCA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGTCAACGGCGCA	ref_3478_upstream	6	1	0	0	0	0	1	1	3	3
TCGGCATTCGGTTGCT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTAGGGCTAGTCA	ref_3478_upstream	93	92	113	95	95	77	102	62	98	68
ATTAACGACGGTTTAC	ref_3478_upstream	2	5	3	3	4	2	4	4	5	2
TCAAGGCCGGATTGGT	ref_3478_upstream	38	51	62	40	66	42	44	41	74	46
CTCACCCCGTCCTCCT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGTGAATTCCTAT	ref_3478_upstream	11	20	14	10	13	12	15	10	22	17
TGCCTTTCTTCCGTTT	ref_3478_upstream	54	42	55	49	44	42	39	44	44	26
TTAAGTCCAGTTTCAG	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCTCGGGCAGGTC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCGGACTGAGGTA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
ACACAGGCATCTTCCC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCCGTCTTGTAAT	ref_3478_upstream	65	86	59	60	74	62	80	62	97	64
TCTCAACTCCATAGAT	ref_3478_upstream	111	90	130	106	86	109	110	79	100	97
TTTGGATACCGTTGAC	ref_3478_upstream	34	43	38	22	43	28	81	31	75	23
ATGAGGTCTAGCAGCC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGTGCGACCGCT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCTTAGTGAGGAT	ref_3478_upstream	3	10	7	9	5	3	3	6	11	1
TAGCCTACTTGCTGCT	ref_3478_upstream	3	1	2	5	3	0	2	1	2	1
GGTAAACGCCACAGTG	ref_3478_upstream	19	18	37	33	21	27	16	20	27	21
GGTTCCAGGCTTTAGT	ref_3478_upstream	5	12	8	9	6	4	2	3	3	2
ATGAGGAACTACTGTC	ref_3478_upstream	28	40	51	33	44	30	42	35	40	22
TGGGTTTTTAACAGAT	ref_3478_upstream	8	5	16	9	8	10	12	8	9	4
ACCATACACGCGCATG	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCGGGCTCCCTGC	ref_3478_upstream	59	68	71	58	81	70	85	46	96	44
TTGAAGTGAGTGTTCG	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
AACTCTGACGAACCCC	ref_3478_upstream	10	5	9	11	9	5	17	9	12	7
CGCTCCGACACTCGAC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TCCAAGGTCTGTGATA	ref_3478_upstream	3	5	4	9	6	3	8	5	9	5
CATCTATAGGGTCGAC	ref_3478_upstream	52	62	55	61	63	55	96	58	57	55
TCAAGCTCGATTAACA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTACACGCGCATG	ref_3478_upstream	174	195	214	201	256	153	235	165	245	143
TGTGGCATTAAGACAA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCTTTTGTAAGGC	ref_3478_upstream	8	4	13	6	15	1	2	3	10	4
TATGGGTATACTTCGG	ref_3478_upstream	25	16	23	15	15	16	9	13	11	19
TTCGTCTCCCAAGGGT	ref_3478_upstream	39	48	48	44	49	36	46	34	41	33
CCTCCTAGCGTAAGGA	ref_3478_upstream	4	6	7	2	3	5	2	4	3	3
GTCCCCTGCTTCATGG	ref_3478_upstream	62	50	66	52	62	44	59	52	82	60
TCTTAGCATGAGGCAT	ref_3478_upstream	40	41	51	35	48	40	28	30	46	37
TGGGAGGTACGGCTCT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAATCTTTGAGAC	ref_3478_upstream	223	236	220	220	221	189	271	190	291	185
AATTAGAGTGATGTTC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCGAGGTGCGCCG	ref_3478_upstream	41	36	41	36	49	32	50	37	52	18
AGTCGTATCGATTATA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTATCGTAGGCTCATT	ref_3478_upstream	6	9	4	0	2	9	8	4	8	4
ATTTTTGACTGCCGGC	ref_3478_upstream	41	37	34	34	45	37	29	38	34	24
CAACACTTCCTGTAAG	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCCTTACTAAACT	ref_3478_upstream	40	41	49	40	57	34	54	52	51	35
TATACGGTTTAGTTGT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTATCGTTAGAGCAGA	ref_3478_upstream	6	6	2	9	10	9	7	6	7	6
CTTGCACCAAGTCTTG	ref_3478_upstream	52	57	60	55	62	42	68	43	74	56
CTCGACAGGGCTAATG	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CACGATATCCACGGAT	ref_3478_upstream	62	63	70	70	71	67	76	54	77	66
CAGCCAACTCGCTATC	ref_3478_upstream	16	24	21	11	17	17	18	13	20	14
TCCGAGCTTTGGATCC	ref_3478_upstream	1	5	2	4	5	1	1	5	4	1
TTACGCATTCTCGTGT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TGAGGCATTAAGACAA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAGTTTACGTGAC	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
GATATCGATTACTGAT	ref_3478_upstream	25	15	25	15	21	19	11	20	28	16
TTCCGTTCCAGGAAGT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGTCATATCCTCT	ref_3478_upstream	23	20	25	21	16	23	26	18	30	16
CGTTTTATGTCATTGC	ref_3478_upstream	41	78	46	51	57	40	76	47	56	42
CTGGTGTGCTCGGCCC	ref_3478_upstream	45	52	65	54	43	51	45	43	59	34
GGGGGAATTCATCTCG	ref_3478_upstream	24	32	23	30	21	33	20	26	25	27
CATACTATCAGGTCCG	ref_3478_upstream	61	81	90	65	80	68	108	63	90	68
ATGTGCTTATCTAGAA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGTACGAACCAGC	ref_3478_upstream	7	16	13	10	18	8	11	6	6	7
GGGCATAAGGTGGGGT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
CCCGACGTGTACTGCT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTGTTACAGATT	ref_3478_upstream	14	13	25	14	18	11	18	15	15	19
ACCGCAGCTTGGAATG	ref_3478_upstream	110	125	144	123	156	115	127	104	138	93
CTCTAGGCAGACGCGA	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
TACCGCTGCAGAACGT	ref_3478_upstream	18	33	24	31	21	19	26	16	29	12
GTTTTGACTCTCTATC	ref_3478_upstream	54	52	64	46	53	49	51	43	51	32
GCCCTTCCTATCTACC	ref_3478_upstream	19	12	15	13	25	17	21	18	29	14
TTGACCTTTAGGAAAG	ref_3478_upstream	14	6	8	7	15	4	5	11	10	8
TCATTGTCTCGTTTCC	ref_3478_upstream	16	13	23	23	16	15	12	12	11	16
TTTGATGAATGTGAAT	ref_3478_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTAGTAGGCTGTA	ref_3478_upstream	11	19	12	13	12	4	24	10	23	19
TTGGGTCAGTAGCTGT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GCCTTTTCATTTAAGT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TGGACCAGCCTTCGGG	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GGCTAAGCTGTAGCTA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
CCGCTTTAGAAGCGTT	alt_1403_negative	6	14	14	9	31	21	14	13	24	11
ATAGTATACTCGGGGC	alt_1403_negative	1	9	5	3	12	2	14	1	13	3
GTTACTATTATCTCAC	alt_1403_negative	19	44	20	26	36	18	36	14	36	8
AGACTCACGCAGGATC	alt_1403_negative	2	1	4	2	4	1	7	5	6	0
GTAGGTATTAGCTCTG	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
CCCCGGAGTCTATGTT	alt_1403_negative	0	2	5	0	1	1	4	3	12	0
CGGGAACTGTCAAAGT	alt_1403_negative	4	5	4	5	6	5	5	2	10	8
GTGATTGTTTGGCTCA	alt_1403_negative	26	46	28	18	39	28	37	20	47	16
ATCCTTAATCAAACAT	alt_1403_negative	24	17	14	12	11	17	30	17	23	12
ACTTTGACTCTGTGGG	alt_1403_negative	27	50	33	24	55	30	48	36	64	23
GTTGTTTACGCAGAGT	alt_1403_negative	3	7	6	0	6	5	5	5	4	3
TCAGTTAGCTCTGTCG	alt_1403_negative	95	174	104	103	185	93	169	86	176	99
AACCGAATTCATTGTC	alt_1403_negative	9	9	13	8	24	19	15	12	21	13
CGGCATGAAGGTCGTT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GTCGTACCGGATGTTG	alt_1403_negative	9	9	5	5	4	5	11	6	11	2
TGTATAGGACGCGGGG	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GGATGAGTTTGGATTC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GGTCTAACAAGCTTAC	alt_1403_negative	94	166	127	98	147	83	151	98	170	94
TGGCCTCGCGCCGACT	alt_1403_negative	17	29	29	15	34	16	40	13	38	19
GTCTTCTGCGACGTTT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GAGTTAAGCATTGCAC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GAGCCCCTAACGATCC	alt_1403_negative	28	30	26	20	40	31	43	21	46	17
ATCGATCTAATGCGTT	alt_1403_negative	6	15	8	6	10	10	13	8	9	10
GGCGCAGTCGGGTTGT	alt_1403_negative	10	21	12	10	18	8	13	6	28	9
CTAGGAAATCGGAAAA	alt_1403_negative	11	6	2	7	11	4	12	3	4	6
TATTTCCAGTATATAA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TCCGGGAGGTTGTTCC	alt_1403_negative	9	14	13	5	16	2	9	5	18	4
TTAGCTGTGTCTTCGC	alt_1403_negative	2	8	6	1	9	3	9	6	8	2
AAGGTTCTCTACGTGC	ref_1403_negative	5	5	2	5	12	7	6	1	7	4
TATGGATTTGTATCGA	alt_1403_negative	17	12	12	16	20	16	14	9	19	10
TTCTCTAGACGCATCC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
AAAACATAGTCTTCCA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TTATTTAAGATGTCTA	alt_1403_negative	23	34	20	18	24	15	33	13	38	20
TGATTGACGGCTACTA	alt_1403_negative	16	24	9	16	12	15	16	9	23	8
GCTCTCAAGATCGACT	alt_1403_negative	12	26	17	20	25	16	29	19	26	18
CATATACAAATTATCC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TATATTAGTAGCAATC	alt_1403_negative	12	31	20	18	30	25	28	21	26	17
AGGCAATCAGAGCATT	alt_1403_negative	58	90	60	49	98	62	93	35	103	55
TGCATCTATACGGGCC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
ATACTGAGAATCCGCG	alt_1403_negative	24	38	27	24	28	24	37	12	43	28
TGAGAATCCTCTTTCA	alt_1403_negative	25	29	37	30	45	27	36	16	49	47
GTCGGTGCAATGCCTA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
ATCGTCGTGTGCGCTG	alt_1403_negative	107	182	151	136	163	107	199	110	189	111
TGGAATATCTGAACAG	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
ATGGTCATTTGCCATC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GGCACACCTTGAATTC	alt_1403_negative	46	95	61	53	103	46	123	40	103	45
TGTCCGGTGTTCGTAG	alt_1403_negative	52	57	40	41	62	41	88	43	87	42
GAGGTCGGGAGCTAGA	alt_1403_negative	66	76	65	53	66	43	80	54	79	43
CCATCAAGGGTATCGC	alt_1403_negative	1	6	6	1	3	3	2	1	7	4
ATCTTGTTTCATCCGG	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
ACTTTCAATCTGAACT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TCGTACGAAGATATTG	ref_1403_negative	68	81	86	67	99	66	96	68	111	51
ATAAAACCATTCTGTA	alt_1403_negative	29	27	28	25	32	20	33	25	32	27
CAGGCAATACTCTTAT	alt_1403_negative	16	44	35	30	49	30	51	11	33	18
TTGGTGCTACGGACGG	alt_1403_negative	41	95	51	55	105	31	102	50	96	45
GCTTGCGTCGTAAGTT	alt_1403_negative	22	31	26	14	28	21	39	19	37	17
CTCGTGGTTGATTTCC	alt_1403_negative	10	21	12	11	23	7	19	16	22	14
TTCTGCGCAATGATGC	alt_1403_negative	54	92	56	52	69	45	76	46	72	35
GGGCCAGTGGCGTTGG	alt_1403_negative	53	68	49	40	72	44	72	31	75	50
GAATATTGTTAACGTC	alt_1403_negative	28	44	33	26	41	16	51	11	54	17
CAAGGTTCTGTATGGG	alt_1403_negative	4	22	8	12	23	12	22	4	23	7
ATTCGCCGTTCAAGAC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TCTTGGCTTGGTATCT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GTGGTTCGTTAGACAT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GCATACAGGGAATAAG	alt_1403_negative	7	10	10	3	16	6	15	14	18	8
ACGTACGACTACCATA	alt_1403_negative	14	14	12	20	23	6	17	5	18	7
GTCAGTTCCTGTCGAT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TAAAGGGTCCCCAGCA	alt_1403_negative	18	25	17	16	22	18	30	12	26	11
CCTTGTCACTCTTAAA	alt_1403_negative	7	17	8	8	19	9	19	7	14	11
CAAAGAGGTAGGGTAG	alt_1403_negative	52	63	41	45	61	33	69	37	78	37
ACGTAGAGCGAGTTTA	alt_1403_negative	24	65	33	37	36	17	43	20	47	29
TCCTCTTCTTGTGTGG	alt_1403_negative	12	14	12	22	17	8	13	10	31	12
GACATACCTCAATGTA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TTTACAAGGATTTGTA	alt_1403_negative	59	71	77	60	84	57	77	52	77	57
GATAACGAGGTCCTTA	alt_1403_negative	10	37	14	14	35	7	44	3	37	4
TATGTAGGTCCTCTCC	alt_1403_negative	18	41	36	23	64	16	42	27	46	25
GCGGACTTACTGTTCA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
CCCAGAACCTCGCGTC	alt_1403_negative	2	1	4	1	2	0	3	0	0	3
TGTCTTTCGACGTAAA	alt_1403_negative	34	84	30	39	66	35	84	35	72	31
CATTCGGACCATTCCA	alt_1403_negative	5	11	11	7	10	11	8	7	10	2
ATTTGAGAATACTTGG	alt_1403_negative	16	38	31	32	50	19	37	24	61	21
AATCTACTAACGACAG	alt_1403_negative	7	31	20	13	35	20	30	18	28	12
TTATAGTTCTGGACCC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GCGGTTCTTGTAGGGC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
AGGCACAGAACATTAA	alt_1403_negative	9	9	12	6	6	8	8	10	13	5
CGCTGCCCATCGAAAA	alt_1403_negative	9	20	18	14	27	15	28	16	35	9
GTCCGAATTTCACTAC	alt_1403_negative	12	12	8	3	19	10	11	4	17	7
AGTTCTGACTTGGACC	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GTCGATGAGGTTCCGT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GGGCAACTGCTTTTTG	alt_1403_negative	23	25	24	20	50	21	33	13	27	18
TAATATACATCTACGT	alt_1403_negative	10	4	7	8	8	5	7	6	16	10
GTATCTTACGTTCCTA	alt_1403_negative	4	7	7	4	6	3	2	6	4	5
CCGCCAAGTAGGGCCA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
ACTATTTCGCACGGAT	alt_1403_negative	13	26	17	17	28	9	31	12	31	9
GCGTCCCCTTAGGCAG	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GGCTGAGTTCCGCCTC	alt_1403_negative	32	60	44	30	37	24	53	32	45	23
CAGATAACAGGTGGTA	alt_1403_negative	13	14	13	13	13	4	14	2	15	10
TTTCGACCTATAAAGA	alt_1403_negative	55	65	66	50	79	51	86	48	69	42
CGTGCCAGCAGCATAC	alt_1403_negative	39	92	46	31	76	44	64	32	76	28
AGTACAGCCACACCAG	alt_1403_negative	105	255	126	110	241	97	233	122	263	91
GGCCCTGGCAGCCCTT	alt_1403_negative	6	11	7	4	9	11	4	9	24	4
TTTTCGTCCACTCGTT	alt_1403_negative	18	22	20	21	32	13	20	10	38	31
ACTAGTACTTTATTTC	alt_1403_negative	9	18	7	17	21	12	10	9	13	7
CGGGGGTTCCTTACGA	alt_1403_negative	31	44	34	45	52	40	41	24	53	35
GGATGTGGCGGTCAAG	alt_1403_negative	41	62	44	31	44	51	60	38	56	41
GTTGCGCGAGAGGAAA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TTTACTCGCTGGCGTT	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
GGAACATCATAGGGAA	alt_1403_negative	0	0	0	0	0	0	0	0	0	0
TGAAAAGTACTCCTCC	alt_1403_negative	20	48	9	10	55	13	41	9	54	7
GGAAGCGTAATCCGAT	alt_1403_negative	17	30	29	13	33	15	40	26	35	14
TCGTACAGACCGTCGC	ref_5794_new	8	10	10	4	6	5	12	9	9	5
CCGTCCTTAGTCCCTT	ref_5794_new	77	112	100	79	115	84	150	52	131	71
CGGCTCATTCAGTTGG	ref_5794_new	0	0	0	0	0	0	0	0	0	0
GCATATTGTGAATCAT	ref_5794_new	12	18	13	13	22	8	13	9	19	14
TGGGGTATCTGTGCCC	ref_5794_new	25	39	41	40	27	27	42	19	52	29
GCCATTCGTAATGGTC	ref_5794_new	23	28	22	26	23	17	33	18	31	26
AACCTACAAACCGATT	ref_5794_new	103	168	139	110	194	87	180	99	206	89
GGCCTACGGGCTCAGT	ref_5794_new	18	37	34	28	38	30	43	29	47	23
TTCAGTAAGGGTGTTT	ref_5794_new	44	56	39	38	57	45	52	34	78	29
CTCCACAGGGTAAATA	alt_5794_new	85	149	106	61	128	98	143	70	145	71
AGTTACCACATAACTG	ref_5794_new	0	0	0	0	0	0	0	0	0	0
GAAAAGCATTTCTAGA	ref_5794_new	0	0	0	0	0	0	0	0	0	0
TGGGGTTCCAGCTTTT	ref_5794_new	43	60	47	42	52	38	56	43	72	47
CCCCATGGAGGATGAT	ref_5794_new	0	0	0	0	0	0	0	0	0	0
CGCTCCCTAATCGAGT	ref_5794_new	183	432	253	226	448	220	488	225	549	185
CGATAAAAGGGCATAT	ref_5794_new	0	0	0	0	0	0	0	0	0	0
GGCCAAGCGAACGTGT	ref_5794_new	7	15	13	9	14	8	24	14	15	9
CTCGATTCCTCGCTTC	ref_5794_new	3	3	4	7	2	3	4	2	5	4
ACAGACCCAAGTTTGA	ref_5794_new	42	57	39	30	42	44	51	44	65	30
TCTGTCGCAAATTCTG	ref_5794_new	27	30	34	23	32	23	41	28	36	31
TTCATCACTTGTCACG	ref_5794_new	4	9	10	6	6	2	10	3	10	6
TTTATGCTCCGTATAC	ref_5794_new	15	36	15	13	39	11	37	13	40	25
ATGTATTCTATTGAAT	ref_5794_new	4	7	2	1	4	3	6	7	2	2
TGAGTTACCTCGACGT	ref_5794_new	58	80	69	48	88	43	89	41	91	41
CGGGTATTTCTAACTA	ref_5794_new	100	121	122	79	128	119	125	76	139	102
CCTCCAGACTTCGTTA	ref_5794_new	79	127	96	75	144	82	141	67	131	77
GAGAACGTCTCCGCGT	ref_5794_new	6	12	5	8	8	6	6	5	4	7
ACCGGCGTGTGTCCTG	ref_5794_new	11	27	14	9	29	11	20	5	17	12
TGCTAGCGATTTTATG	ref_5794_new	0	0	0	0	0	0	0	0	0	0
CCTCATCAGAAACCAT	ref_5794_new	0	0	0	0	0	0	0	0	0	0
CGAATACCACAATAAG	ref_5794_new	25	31	27	22	21	21	29	10	33	12
TAGTCCAGCCACTACG	alt_5794_new	18	22	11	12	33	11	29	14	19	6
TTTCGCTTAATCCGGT	ref_5794_new	0	0	0	0	0	0	0	0	0	0
GAAAGGGCACAGCTCA	ref_5794_new	12	41	22	13	32	23	48	13	43	15
TCGTTGGTCTTGTGGT	ref_5794_new	17	24	15	12	15	11	14	15	24	26
CGTCATTCCGGATGGC	ref_5794_new	14	34	18	14	26	10	38	13	26	11
CGTTGCTTATTGGTGA	ref_5794_new	0	0	0	0	0	0	0	0	0	0
CAAAGAGGCTTAAGGC	ref_5794_new	112	149	154	135	170	108	159	91	178	108
TACAGGTGTCCACGAA	ref_5794_new	26	27	41	23	29	26	52	25	44	20
CGTCCGCGCTGGTAAC	ref_5794_new	116	167	141	103	176	110	149	133	155	102
CCTGTCCACTGTCGGA	ref_5794_new	9	26	11	19	35	6	39	9	33	20
TCGATGGTTGGAAGTA	ref_5794_new	53	59	43	54	61	56	72	56	89	48
TGTAGTTGTTGGTATA	ref_5794_new	6	14	20	10	16	4	16	9	17	10
TCAGTAGAACAGTTGA	ref_5794_new	0	0	0	0	0	0	0	0	0	0
CTTACAAGGGCGGCTG	ref_5794_new	16	26	32	14	17	16	24	17	26	22
TTATTTTGTCACTTTT	ref_5794_new	64	73	69	52	73	68	80	53	91	44
ACAGCCCCAAGTTTGA	ref_5794_new	0	0	0	0	0	0	0	0	0	0
CCGACCTTAGTCCCTT	ref_5794_new	0	0	0	0	0	0	0	0	0	0
TATTTCATCAACGACC	ref_5794_new	41	69	62	41	52	41	89	54	64	45
ATCTGCTCTATAATAC	ref_3388_upstream	4	7	7	4	6	1	4	3	4	2
GATATCAAGCGGTATG	ref_3388_upstream	22	27	29	21	23	27	23	21	31	28
CTCGCCGTCCAGGTCT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATACTCAATGGCTCCG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TAGGAATCCAACCCTG	ref_3388_upstream	8	17	28	16	21	17	11	17	17	15
AATAGTGTGGTCAGCC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGTCTTAATGCGG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTATACTGCAATG	ref_3388_upstream	95	99	98	84	120	74	121	71	148	79
CTGTTAAAATGAACGT	ref_3388_upstream	10	13	18	7	19	16	11	15	19	8
CTACGCGGTCCGAAGT	ref_3388_upstream	59	79	78	76	90	44	89	55	86	57
CGGTCTAGAACAGTTG	ref_6072_new	0	0	0	0	0	0	0	0	0	0
CTTTTAGTGGCCTAGA	ref_3388_upstream	75	119	106	92	99	68	101	79	99	71
GGCTCGGATGTCAGTA	ref_3388_upstream	31	38	43	43	46	23	49	32	59	28
CATGCTCTAACATTTT	ref_3388_upstream	70	89	79	81	89	69	80	76	93	63
CATGGAGGGCATTGGC	ref_3388_upstream	20	18	28	11	23	22	19	9	29	9
GATGTTCTGTGCTATA	ref_3388_upstream	1	5	0	3	3	3	2	2	4	1
ACCCAAGACTAGCTCC	ref_3388_upstream	9	10	7	5	8	6	12	7	10	6
AAATCGACAATCTCAC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
GAGAATGCTGTCGCAG	ref_3388_upstream	14	23	16	17	21	24	22	19	10	16
AGTTGTACTGGATATG	ref_3388_upstream	9	11	5	14	7	6	17	12	16	7
TTGTGTATACTTTGCG	ref_3388_upstream	64	107	84	67	90	60	118	56	124	36
CCCGTTGTTACTCTCA	alt_3388_upstream	36	155	46	38	127	45	123	32	149	31
AGCGCTCATAATATGA	ref_3388_upstream	380	417	484	423	448	362	490	387	511	359
TGTCATCCTCAGGTCT	ref_3388_upstream	16	20	26	13	20	16	17	15	27	22
TATCTCGCACCCGAAG	ref_3388_upstream	47	69	48	48	56	41	37	49	69	35
TGGGGTGATCCAGTTA	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGCCGGTAGCTC	ref_3388_upstream	139	185	162	157	159	110	168	126	178	110
AGAGTAAGCGGGCTTT	ref_3388_upstream	74	117	115	81	123	74	134	82	133	69
AATAGGTTTGCTGCCA	ref_3388_upstream	1	4	2	0	0	1	1	2	2	1
TATTTTCGGAGGTCAG	ref_3388_upstream	16	22	23	12	19	20	36	18	20	7
AGCTCGTTGCTAAAGG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGGCGGCTGTAAT	ref_3388_upstream	103	103	125	117	119	91	132	89	124	86
CATCTCGCCCTGACGA	ref_3388_upstream	30	29	40	23	32	30	41	33	37	22
CAGGAATCATCTGTTG	ref_3388_upstream	26	29	24	12	37	20	33	19	32	19
TTTGAGCCTGATACAC	ref_3388_upstream	8	10	9	13	11	5	22	15	14	8
TGAGCTCATGAGCAAG	ref_3388_upstream	10	10	6	7	12	4	12	7	6	6
AAGGTTCCGAAGTGTT	ref_3388_upstream	32	37	36	31	40	32	61	36	45	31
ATACATAATTGACCTC	ref_3388_upstream	1	3	7	5	4	2	3	9	9	3
ATCGATATTGCGCCCG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TATGAAGCAGTCTGAA	ref_3388_upstream	44	21	26	32	25	24	21	26	40	34
GGTTCTGGAATGGTCA	ref_3388_upstream	0	0	0	0	0	0	0	0	1	0
GCGTTTACAGTACCTT	ref_3388_upstream	5	9	6	5	3	8	2	6	8	0
CCTTATGGGTTCTGTT	ref_3388_upstream	22	18	27	23	21	21	30	14	24	17
GACTGATCCCGTATGG	ref_3388_upstream	19	26	19	16	22	12	23	10	29	13
ATTCTTGCAATCTTAA	alt_3388_upstream	66	69	57	72	88	61	81	68	70	49
AACTCTACAATTGCTT	ref_3388_upstream	23	33	38	22	39	26	36	26	44	23
GCTCAGGCTTAAGTTA	ref_3388_upstream	15	16	17	26	11	15	16	13	12	11
CAGTACTGGTTATCGT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TAACCTCATGACGTGG	ref_3388_upstream	36	39	46	36	51	32	25	34	50	23
CGCAGGTCTTACCGCA	ref_3388_upstream	20	29	17	18	28	17	27	19	35	25
TTTGAAAATTCGTAAT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
CACCGATGACCGATTT	ref_3388_upstream	16	30	17	15	18	12	13	18	18	14
TTCAAGTGTAAATCTC	ref_3388_upstream	5	4	5	7	5	5	3	9	7	3
CTTGCCTTGTTATTCG	ref_3388_upstream	24	34	21	25	21	20	33	17	24	14
CATAGCGCTTGCAGTT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CCAGCTATACGGACCA	ref_3388_upstream	15	19	30	13	25	15	29	16	19	20
AAACGCTCCAGCCCCT	ref_3388_upstream	23	48	30	26	34	21	55	26	35	31
TTTTGGTCAAGATCTG	ref_3388_upstream	49	55	59	51	47	26	30	66	45	45
GGCGTGTACAATACTA	ref_3388_upstream	57	84	66	42	75	54	82	77	78	46
GTCAAAGGGTGAAGGA	ref_3388_upstream	8	14	14	10	12	6	6	8	12	10
CTGATATCCCACCCGA	ref_3388_upstream	16	11	10	13	13	6	8	11	10	9
TTCCGCCATGGGACTA	ref_3388_upstream	28	22	28	36	31	20	35	31	43	29
GCTATCAATTTGTCAC	ref_3388_upstream	44	93	65	48	82	48	76	52	75	54
CCGTCACCGTTCTTAG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
GGAACGACTCGTTATA	ref_3388_upstream	62	79	81	66	70	56	87	57	87	42
CACACCGTATCCTAAT	ref_3388_upstream	47	40	43	30	45	25	58	39	37	29
TACGTACCTGAGTAAG	ref_3388_upstream	31	126	42	28	127	32	145	17	125	22
GCGCCGCGGTGCCGGC	ref_3388_upstream	25	34	32	38	36	27	40	24	36	31
CGATCACAGGCCTCTC	ref_3388_upstream	167	141	204	159	157	166	194	127	178	166
TGCCTAGCCTGTAACC	ref_3388_upstream	8	17	12	1	9	13	12	4	10	10
GAGCAGGGTGGCCTCT	ref_3388_upstream	47	34	54	53	41	47	61	44	54	51
TGTTTCTTGGGTTCCG	ref_3388_upstream	4	2	5	8	13	2	8	3	7	0
ACGCCCCTGCTGCCTG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGCCGGGTGTAGC	ref_3388_upstream	41	63	39	41	39	34	54	35	65	49
TTTATTTTCTTGTACT	alt_3388_upstream	11	8	16	17	9	11	12	4	6	5
CTGTCAATAATTTCCA	ref_3388_upstream	7	20	15	16	13	20	17	16	19	12
GTATATCTTAGTGTCC	ref_3388_upstream	46	66	42	29	49	40	57	54	62	51
CTTCTCCGATGAACTT	ref_3388_upstream	17	19	20	21	21	18	15	11	14	17
CGTGTGAGATACGACC	ref_3388_upstream	173	207	251	203	226	196	244	187	247	143
CTGGGCGGGCCTATCT	ref_3388_upstream	14	14	17	4	10	9	4	2	8	8
AAAGATATGTCTTCTT	ref_3388_upstream	48	57	61	48	46	55	47	55	55	40
TTGGTCCGCGGTCATG	ref_3388_upstream	11	11	6	6	7	6	11	8	11	3
CAACTAATAGATTTTT	ref_3388_upstream	19	25	25	20	27	18	20	25	23	26
CCGGGTTAATGAGCGG	ref_3388_upstream	2	5	6	4	7	2	9	6	5	3
ATTCGTCTGCGTGCCC	ref_3388_upstream	14	25	28	25	29	17	22	23	29	16
TTATGAGGCGTACACA	ref_3388_upstream	23	16	33	27	18	26	38	28	32	19
TATAACCAGAGTCCCT	ref_3388_upstream	20	18	24	19	18	14	17	16	17	13
CATCACATATACTGTT	ref_3388_upstream	0	3	2	2	4	1	2	5	1	1
TTCGTCACCAATTTCT	ref_3388_upstream	103	107	93	89	98	71	124	83	106	70
TGGTCATCTTAGATAT	ref_3388_upstream	4	15	8	8	10	5	18	9	4	7
AATCTCGCCTACTGGG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCATTCCTTTCGC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TACATACGGCGACCGG	ref_3388_upstream	27	36	21	12	32	19	23	26	18	27
CGCTGAATTCTCGCGC	ref_3388_upstream	47	55	64	50	50	47	58	56	67	49
GCTGATTAAACTGTAG	ref_3388_upstream	14	17	20	17	16	20	30	17	11	9
GCGCGGTTTTGCAGAG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTGTGATGCTCCA	ref_3388_upstream	21	21	27	29	37	24	35	31	44	17
GTTTCTATGTATTAGC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
CCCCAGCAAGAAGCGG	ref_3388_upstream	188	157	194	195	173	161	165	154	193	127
ACAACTCGCGTACTCG	ref_3388_upstream	191	224	228	177	247	150	234	174	257	181
TCACATGCCCGGTGCG	ref_3388_upstream	5	6	6	2	5	1	9	0	4	2
ACTGCAACTCATCCTA	ref_3388_upstream	20	17	15	17	22	24	20	19	38	19
GACGCCTAGTTACGAA	ref_3388_upstream	13	24	24	19	24	18	25	26	26	16
CTCTTCTTCCTTGTAG	ref_3388_upstream	14	30	19	11	28	15	36	14	31	26
AGTGTTGGTCTTGATG	ref_3388_upstream	157	212	210	165	204	168	193	142	240	168
GCTTGTCTGGTCTCAT	ref_3388_upstream	16	23	26	14	29	29	41	14	30	24
GGTTCTGTTGCTTTTG	alt_3388_upstream	59	74	75	49	86	55	78	45	74	58
CCGGTTAATCCGCCCA	alt_3388_upstream	342	408	371	337	431	331	457	275	452	246
CCTAATGTTCGCTCCG	ref_3388_upstream	8	11	8	6	14	6	14	6	11	3
CCCCTACCGTATGTCC	ref_3388_upstream	50	65	57	69	72	54	59	37	83	43
TAGCCCTCACCTGAGA	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGACTACTTATCG	ref_3388_upstream	12	31	18	16	22	7	20	16	23	10
GGTTTATTACTTGGCG	ref_3388_upstream	43	59	57	59	78	41	66	46	65	56
CGTTTCATTGCTGTTG	ref_3388_upstream	38	39	46	26	54	33	50	26	47	24
ACACCATCAGTTGAGT	ref_3388_upstream	7	11	5	20	17	6	8	5	22	7
AGTTCGAAATACCTAT	ref_3388_upstream	63	100	88	63	99	80	79	59	99	71
ACAACTCGCGTACACG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
CGGCACGCCACGTCAT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
AAGCATTGGGGTATAT	ref_3388_upstream	85	82	84	79	75	81	82	68	76	67
AATGAGATAAATGGCT	ref_3388_upstream	32	30	49	31	38	23	46	32	27	20
CCATCGCCGTCTCGGT	ref_3388_upstream	43	56	47	49	73	35	74	61	76	52
AGGTTCTCGGTTTTCG	ref_3388_upstream	37	43	36	39	43	39	59	35	37	43
AAGAGACAACCTTATT	ref_3388_upstream	86	100	109	93	86	95	115	75	118	76
TAACGACGCAATCACC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCCAGTATCCAGG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCTAAGATCTGGT	ref_3388_upstream	28	26	28	19	41	25	44	37	36	21
AAGTTCGTTCTCCGGT	ref_3388_upstream	16	15	19	15	14	13	19	8	13	13
GCGCTTACGTAACGCG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TTACTCACTTAAGGTT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTGGCTCCACGCC	ref_3388_upstream	11	21	16	17	19	10	19	15	12	15
CTTGCTTACAGGGCGC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
CAAAATCATGTCGGTG	ref_3388_upstream	52	52	43	57	46	44	45	40	48	38
CAGCGAACTCCCTGCT	ref_3388_upstream	51	78	46	51	55	53	43	49	69	43
ATGAGCTATATCCCTC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
CGACTTCTTCTTTACC	ref_3388_upstream	41	32	42	39	55	42	35	38	43	35
CATGTCATGTCGACCC	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TCATGAGTAAAGGATT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGGTGCGTATAGT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
AATAATAATTCATTTC	ref_3388_upstream	12	5	17	7	4	5	7	9	7	4
ACCCTCGCATTAAAGC	ref_3388_upstream	4	15	6	8	19	5	13	7	19	13
CTTTTGGCATGAAGCC	ref_3388_upstream	24	20	23	29	26	29	20	22	29	23
TGTGGCCCATTAGTCC	alt_3388_upstream	4	10	3	2	4	5	13	5	7	9
CCGGATTACCGTCGTC	ref_3388_upstream	19	20	25	21	25	16	25	18	23	14
AAGCAGTAGGGCCAGA	ref_3388_upstream	27	26	34	27	35	22	20	14	24	18
CCCCACGGTTTTGCGT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCAAAAACTGTCC	ref_3388_upstream	14	24	15	24	22	18	28	28	24	11
TCATGTGTTGGCCTTA	ref_3388_upstream	2	4	3	4	4	0	1	6	7	2
TGGTTCGACGAAGTTG	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
CACTGGCCATCCCGAG	ref_3388_upstream	21	129	39	36	113	21	160	44	142	29
AATTCTTGCGTTACCT	ref_3388_upstream	1	1	5	3	3	8	3	3	5	1
TCTAGGTGGCTTCGGT	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
TACCAATTATTCGGGC	ref_3388_upstream	25	29	30	36	44	24	21	29	33	27
CGGCCTTTCCGGTATC	ref_3388_upstream	55	63	50	47	65	60	59	24	55	42
CGGCGTGTCGATTCTC	ref_3388_upstream	69	63	87	79	69	51	63	75	67	57
TGTTGCACGGCACTTT	ref_3388_upstream	16	29	24	14	21	9	22	18	9	17
TCTTACTTTTTTAACT	ref_3388_upstream	9	9	8	5	16	11	11	6	19	2
AATTTTAACAGAGGTA	alt_3388_upstream	145	180	219	141	198	144	212	163	219	149
CATCGGCGTGTACCGA	ref_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATATATTTCTTTTAAG	ref_3388_upstream	32	32	48	36	44	27	44	42	40	24
AACCGAGTTCCGTTCT	ref_3388_upstream	10	17	31	22	15	15	13	31	4	16
TACAGGATATGTAGCC	ref_3388_upstream	107	109	127	112	88	79	112	89	88	71
TCCTCGTCGATATAGT	ref_3388_upstream	10	17	5	12	27	11	24	7	28	10
TGCGTCAGGAAACATG	ref_5572_RC	74	88	92	90	106	84	113	66	117	60
TACCTCTGATCCAGCT	ref_5572_RC	1	5	9	3	2	3	8	1	5	1
TCATTAGACTGTTGAT	ref_5572_RC	127	202	167	126	226	135	234	139	252	141
TCAAAGTAGAGGATGC	ref_5572_RC	3	5	2	1	6	7	6	5	6	4
TTCCTTGCTCTCATCA	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TCCGATATTGTCGCCG	ref_5572_RC	17	14	5	12	22	21	22	14	17	6
TTTTTCGGTGGGAGCG	ref_5572_RC	3	3	4	4	2	1	3	1	11	5
CTGATATTAATTTTAC	ref_5572_RC	42	64	48	45	51	55	57	43	68	37
CGGTTTGAGCCCTGCC	ref_5572_RC	37	54	43	24	63	27	56	33	50	30
ACATCCCAGGCTGCCC	ref_5572_RC	50	53	52	46	43	47	61	46	61	37
GCAATACACTATTAGT	ref_5572_RC	5	5	10	8	12	8	3	3	7	7
CTATTCGTATGTAGGG	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
CAAAGCGGTAATTTGC	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
CAATGTGTGTGAGATT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
GGCGGTTGACTCTTCT	ref_5572_RC	4	5	3	2	5	2	7	2	1	7
TTACAGAGATACGTTG	ref_5572_RC	24	40	28	28	26	26	41	19	41	19
AGGCAGCTCTACTTAT	ref_5572_RC	21	22	16	15	29	17	27	18	27	12
TGACTGAATGCTATGT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
ATCAACTACAACTTTC	ref_5572_RC	25	32	24	16	38	29	41	24	46	14
CAGACTTTATGCAGGT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
ACGTTCAAAAATGGTC	ref_5572_RC	19	22	31	22	21	12	25	26	28	22
GGTCTATCAAGCGTTT	ref_5572_RC	8	14	16	8	20	8	9	8	11	10
CGTCCTTGCATTCTGA	ref_5572_RC	55	92	106	79	80	60	97	58	91	79
GCCTCGTTTAGACCTG	ref_5572_RC	1	2	3	0	2	2	1	1	1	0
AGATTTATCATCTGGA	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TTTAAACCTATTAGTT	ref_5572_RC	47	39	54	44	50	24	57	28	48	40
TATTCGGTTGTGGTCC	ref_5572_RC	6	5	10	12	14	10	9	6	10	13
GACTAACTGTTTGGAT	ref_5572_RC	41	88	73	60	64	48	73	60	83	52
GTAGCGACTTACTCGG	ref_5572_RC	6	11	16	8	11	7	11	6	10	6
GTGTTTACCGATTCGC	ref_5572_RC	1	4	15	3	4	3	13	5	5	4
GAGTTATAAATGTGCG	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TCTTGGTGGCTGTGGC	ref_5572_RC	4	46	23	13	39	14	33	9	34	12
CTATCTGCTTTTAGCG	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
CTCATTGAGGGGTGCC	ref_5572_RC	24	20	30	19	31	24	36	30	33	25
TCCTACGGATCACCGC	ref_5572_RC	69	112	74	85	131	77	108	49	127	80
CATGTGAGCGGGAAGC	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
GGTCCGAGCTGAACAT	ref_5572_RC	36	36	38	37	44	43	46	31	58	29
TCACCGAATTCTAGGA	ref_5572_RC	3	6	6	4	8	1	9	4	2	4
CTTGTTCAACGGTCAA	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
CCGTAGGATTTCGTTC	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
GCTATCTCACTCCGCT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TGTGCTACGAGCCGGT	ref_5572_RC	7	12	3	6	5	5	13	5	16	4
CATTTGACGTCTCTAC	ref_5572_RC	8	6	4	11	11	9	32	8	14	10
TGCTCCTACTACAGCG	ref_5572_RC	55	75	60	56	98	41	81	58	83	46
TCTCTGACCGAGAATA	ref_5572_RC	14	8	10	6	14	12	17	3	11	14
CGTTTCGAGTTATTAT	ref_5572_RC	54	61	57	60	81	67	66	53	67	34
TTCCAGCAGCTCTTTC	ref_5572_RC	35	47	35	32	37	40	56	45	50	32
TGGCATTTCCAGTCCT	ref_5572_RC	19	20	21	19	7	10	20	11	20	13
AAACTTCTAAATTCTA	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
CTGCAGTTATGTCCAT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
CTCACACCAATTTTTA	ref_5572_RC	13	16	20	12	9	13	14	4	15	11
GGAAGAGGTCAATAGC	ref_5572_RC	43	34	48	26	38	35	29	39	41	33
GCACGGGTGCGACTTG	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TGCACGTCACTTCATT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
CCCAGCAGGGGGAGTT	ref_5572_RC	7	30	7	11	24	6	15	11	20	6
AACATAGCGGTCTTTG	ref_5572_RC	2	6	6	1	6	2	4	0	4	0
TACGGCCCGACATGAT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TAAATTGCAGCTGGTC	ref_5572_RC	41	84	56	45	48	55	73	46	63	39
TCGATGCCGCGAGTCG	ref_5572_RC	1	2	0	0	1	1	4	4	2	2
CGGTTTGTGATTCGCT	ref_5572_RC	9	25	13	18	16	9	27	11	30	6
CAGTGCTTTGTACCAG	ref_5572_RC	17	25	28	22	33	20	38	23	52	16
CCGCCATATTTTGTTC	ref_5572_RC	14	28	23	11	24	14	30	18	22	16
TAAACTCGGATAGACC	ref_5572_RC	21	28	23	14	33	11	23	10	34	14
GATCTTGGTTTTATAG	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TTTCGTTGGAGCCTGA	ref_5572_RC	10	17	6	8	5	5	15	6	11	10
GAAGTTTACTAAGGAG	ref_5572_RC	36	58	54	40	55	32	65	37	70	33
TGGTAACGCTATAACT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
AGCGCTGTGCCTTACT	ref_5572_RC	44	60	46	35	48	37	55	42	68	26
CGGCAGGTGTACGACT	ref_5572_RC	10	21	18	15	32	22	25	15	35	16
TCCAGGGCCCAGCCCC	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
GATCGGTGTGCGGCGC	ref_5572_RC	19	8	14	7	21	15	14	7	20	7
TGAGACGGTGGCTCCA	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TTAATGGTGCAACATG	ref_5572_RC	9	10	7	3	8	6	16	10	11	3
TAGGCCGCAAACAGAG	ref_5572_RC	1	3	2	3	8	0	4	9	5	5
TAGGGTGCTTCTACAC	ref_5572_RC	10	23	26	11	27	8	33	15	32	6
CTTAGGTCATCACGTA	ref_5572_RC	34	26	49	26	51	33	38	29	45	31
GGACGGGGCTGCACAA	ref_5572_RC	28	23	41	25	30	24	35	35	29	24
AAGTGTTTTTTGCCAG	ref_5572_RC	10	10	6	5	13	4	10	8	5	10
ACCTCAAATTTCCGAA	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
AGTTAGATGCGATACT	ref_5572_RC	28	71	34	37	52	14	38	17	46	19
TGCAAAGGGCAAATGT	ref_5572_RC	34	51	43	42	60	38	43	35	47	38
CCGCTTTATGTTGCCT	ref_5572_RC	9	13	8	12	14	10	17	6	19	8
CGTCACCTGTGCAGAC	ref_5572_RC	36	119	36	41	105	51	94	36	107	30
GTCATGGATCGCCCCT	ref_5572_RC	25	27	37	31	36	29	52	29	26	23
CGCGTTTTTCTATGTT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
GGCCGGAAACTGATCT	ref_5572_RC	50	38	64	42	44	51	52	32	47	49
AACGGACCTTTGTGCA	ref_5572_RC	11	17	15	25	21	9	16	12	32	17
GTTACACTTTGCTTAC	ref_5572_RC	153	250	172	150	313	143	287	144	264	154
ATGAAAGACTTTCGGC	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
TATGGTCGGAGCGATA	ref_5572_RC	174	225	218	162	242	167	226	132	254	140
ATTTGTGTAGGCTACT	ref_5572_RC	14	23	27	20	19	15	32	12	31	21
AAGCGGTAAACACCTT	ref_5572_RC	26	17	29	14	41	23	26	14	18	14
TTTATAGCCGCACCTC	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
AGTTATACTTATATCT	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
AGATCCTAGAAAGAAG	ref_5572_RC	0	0	0	0	0	0	0	0	0	0
GATTCCAGCCCGCGCC	alt_5829_new	7	9	5	6	10	10	8	8	11	6
TCGTCTAAACATGAGC	alt_5829_new	23	35	24	18	34	19	30	16	27	20
CAAGCATATGGCTTTT	alt_5829_new	26	46	27	31	35	16	56	30	54	16
TCACATGGCAGCTGTC	alt_5829_new	29	47	24	29	44	21	39	29	43	28
AGGGCTTTGAAGATCG	alt_5829_new	3	6	3	3	5	5	11	1	3	1
GGAGTATAATTTCGTA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTTGAGGTTAGGATGA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTCCTTCCTTGTAGCC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TCCGCTATGGTACCAC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TATGGACGCGTCTCAG	alt_5829_new	14	27	29	22	14	10	21	14	32	15
GATCAATCCTACCTAG	alt_5829_new	41	20	52	44	17	41	21	43	32	27
CTTTAGGGTGTACCAT	alt_5829_new	0	4	6	1	9	4	3	6	13	0
TCTACTCGGTGTGTAG	alt_5829_new	21	28	11	27	32	13	39	10	29	14
CACCTAACTTCTGCGT	alt_5829_new	17	49	15	20	48	13	39	20	43	10
AGTTATCATCACCAAG	alt_5829_new	3	4	4	3	3	3	5	6	6	0
GTACGTCCATCCCTAT	alt_5829_new	11	14	4	5	12	5	18	4	12	4
TATCAGCCGAGCCCAT	alt_5829_new	6	29	13	18	22	12	22	17	35	13
ACTTCAGAAATCTGAA	alt_5829_new	17	33	18	13	40	22	35	16	31	12
GAAGCTTGCTTACGCC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CTCCGTTTCGTCTGGC	alt_5829_new	24	50	33	41	49	23	54	26	59	23
TTAGTTAATCCGCGTT	alt_5829_new	9	28	13	10	24	5	21	9	20	11
TTGGGAAGATTAAGGC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
ACTTCCTTGGTACGCG	alt_5829_new	9	7	2	5	8	3	10	1	4	6
CACCTATAGTATCGGC	alt_5829_new	29	42	46	38	50	22	37	31	49	19
GAGGACCAATAAGGTT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
AATTATGTAAGTAGAC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
AATAGCGGTGCCGTAC	alt_5829_new	5	7	6	1	4	1	10	1	6	2
CTTCGGATTAAGCAGC	alt_5829_new	1	2	4	1	1	5	4	2	0	1
CTGGTCATTTTGTAGT	alt_5829_new	37	81	36	44	92	23	76	24	84	30
CGCTCGCCCGAAAGCA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTTCGTAAGGAAGGTC	alt_5829_new	14	28	13	22	16	15	24	7	19	7
CGTAACATCCGTATGC	alt_5829_new	7	27	14	13	21	11	25	8	34	12
CTCACGTATTCGCTGG	alt_5829_new	20	36	20	27	33	17	41	14	39	20
TTATGTTTGTTCTGTA	alt_5829_new	1	10	5	5	9	3	16	4	16	2
AGCTTTGATCGTTGCC	alt_5829_new	6	22	14	15	21	10	26	11	26	11
TCTTTGTTATTTATCA	alt_5829_new	17	35	18	17	22	15	27	20	35	12
TCATAGGGTCTGCTAA	ref_5829_new	11	25	9	5	17	17	28	17	29	7
TTCCTGTGGTCAGCCT	alt_5829_new	44	92	53	56	83	48	86	38	80	51
AGTGACGGATCGGCGA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TATCTTGCGCTCGCGG	alt_5829_new	56	74	43	41	67	42	80	45	88	37
TTAGCGAGGCTGACAG	alt_5829_new	2	11	5	5	10	3	8	3	8	10
AGGGACCCTTTTTCTG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
GCTTGTACCGTTCGCC	alt_5829_new	24	36	29	34	40	22	43	19	41	22
CGCGGATTGACCAGTA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TGTCGTTATCCAGTAG	alt_5829_new	11	18	6	8	7	5	15	8	18	6
ACTCATCATGACTATA	alt_5829_new	10	12	7	3	10	7	12	8	10	3
GGGAACTTGTACCCGG	alt_5829_new	23	24	22	26	31	21	20	10	22	11
ACTCCCAGTATCATTT	alt_5829_new	13	29	12	11	37	10	36	6	33	6
CATTTTCAAGTAATTT	alt_5829_new	31	46	29	32	28	21	58	21	50	25
TCTTTGCACCCGGGTA	alt_5829_new	4	1	6	2	3	6	3	5	6	1
GTCTCTGTCTCCAGCA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TATCCGTGGCAACTGG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TAGCCCTCGATCCTAC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
ATAACCTTGTCCTCAT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
GTTGGCAGTACCGTTA	alt_5829_new	3	7	0	3	5	1	3	6	6	1
CTTGTGTCGGTGAACA	alt_5829_new	41	68	60	48	72	47	72	28	64	30
TTGATGCGAGGTAGAG	alt_5829_new	38	89	43	44	74	31	72	40	100	30
ATTGCTGTATTCTTAA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTTGCTTCGGCCCCTA	alt_5829_new	15	33	26	20	28	22	25	12	37	22
GCCGTCTCATAGTTTG	alt_5829_new	13	53	31	17	57	27	56	21	41	22
TGTGCTAGGTAGTCGG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
ACGGTAAAATTTGCTG	alt_5829_new	16	23	15	14	19	10	23	10	21	15
GGGAACACCGCGAGTG	alt_5829_new	3	0	1	1	2	0	1	0	3	0
TAGCCTTGAGGGGATG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTGTTGTGGCCAAAAC	alt_5829_new	32	41	36	37	70	24	61	15	58	16
CTAATCTTTGCGATAT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
GGTGAATGTTGCTCAG	alt_5829_new	11	20	14	20	15	9	20	8	24	10
CGCCAGTTAGCTTCGG	alt_5829_new	17	35	21	21	29	14	31	17	36	16
TCGGGTGATAAAGTTA	alt_5829_new	39	64	49	35	66	40	83	41	78	33
GTCTACTATTGGTTAA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CATGCCTTCATTACAT	alt_5829_new	20	39	28	20	43	31	50	23	48	18
ACTGGGAAAGACGTAC	alt_5829_new	7	6	5	5	5	6	18	3	11	3
TGAATATATACAGTTT	alt_5829_new	7	7	11	5	12	3	14	4	15	9
AGGTCGCTGTTTCGTG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CCGTCGGATCCTCCCT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
ACATATTCGAATTGAA	alt_5829_new	12	34	39	29	43	18	41	31	42	25
GCGAGTTTGCCTTCCA	alt_5829_new	36	51	32	21	60	32	56	26	73	20
AGATTTATGTAGGAGG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TGGGGTTATACTCTAC	alt_5829_new	44	86	56	34	94	49	108	47	124	31
TGCAACTTCTCCCATA	alt_5829_new	211	394	284	273	439	225	450	228	456	232
CTTCTGTGAGCGTTTG	alt_5829_new	3	19	5	11	15	5	9	9	19	4
TCTCGTACTGATTTGG	alt_5829_new	4	7	5	7	4	7	15	6	5	2
CGAGCCAAACTAGCTG	alt_5829_new	4	7	3	3	7	0	4	0	1	3
TGAGAATCGTGTCGTT	alt_5829_new	39	57	53	53	67	52	77	37	70	35
CTGGGGCTCCCCCGAA	alt_5829_new	22	38	18	25	45	18	36	23	45	16
CCAGATAGTCTGCGGC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
AACAGAGTTGCCACAC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CTTTCGGGGTTGACTC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CGGTTTCAGGGTTATC	alt_5829_new	4	11	7	8	12	6	16	7	17	9
AAGAATCAGCCCTATC	alt_5829_new	9	8	11	8	12	4	6	4	15	7
CTGTTAAAGTCACATG	alt_5829_new	1	3	1	2	6	0	4	0	4	0
CCCATACATGTTTGTG	alt_5829_new	6	18	11	10	14	3	17	8	24	3
TGACCGTTTTTGCCAC	alt_5829_new	39	64	45	37	68	38	69	40	62	34
TCTTTACACCAGACTG	alt_5829_new	73	93	59	56	118	56	122	58	131	51
GGTAATCTATCACGCA	alt_5829_new	30	40	38	30	57	29	51	30	57	38
TAGCCTAATTCGCAGC	alt_5829_new	38	79	52	38	88	47	102	46	74	38
GCGCTTCACCTACCTA	alt_5829_new	9	23	11	11	19	5	28	4	26	6
TGCACGTTTTCTTATC	alt_5829_new	27	52	39	31	58	40	50	44	66	31
CGTATGTATGCGCCTC	alt_5829_new	19	49	26	21	42	13	44	19	33	27
ATATTGAATTTCTAGG	alt_5829_new	50	56	52	47	81	36	71	39	73	31
GTACGTATATTTTCGC	alt_5829_new	60	70	49	34	73	42	64	37	73	37
GTACTTAAATATCTAA	alt_5829_new	10	22	19	24	23	11	22	8	25	13
AGCAACTTCTCCCATA	alt_5829_new	0	0	1	0	0	0	0	0	0	0
GAACTACGGAAGCGGG	alt_5829_new	6	7	7	1	6	5	4	3	8	1
CTTGTTTTTGGCTGAG	alt_5829_new	19	19	20	14	26	11	24	6	35	15
TCAAAATAGGTATATC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTATGAATGCTGCGGG	alt_5829_new	27	41	20	46	45	31	54	27	51	31
CTCTGGTGGTGTATAA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CCGATTTACCTGTCCT	alt_5829_new	16	30	25	11	26	15	19	16	26	19
TCCGGCACCAATCACG	alt_5829_new	10	17	13	18	20	10	20	15	15	11
ACTTTTGGGCATCTTT	alt_5829_new	1	4	1	2	3	2	3	3	2	3
TCGCGGAGTCCCCGTT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CCTCTAATCGGGCTTG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
ATGGTGCAATTTATAC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TAGCCCCTTGATGTTC	alt_5829_new	31	46	27	24	54	30	55	30	44	23
ACTCGTTGCTGGTCTA	alt_5829_new	3	21	5	9	29	3	23	7	22	3
GCCACAGGCCCCTTTG	alt_5829_new	19	43	22	28	35	14	29	23	43	19
CTAAGACCAGCGCCAT	alt_5829_new	47	66	66	73	103	46	104	65	91	61
TACCCCGGGTGTACAA	alt_5829_new	4	6	2	4	11	4	7	0	6	1
TCAAACTGTAAATCAG	alt_5829_new	19	13	22	9	22	9	20	15	24	9
GATTCCCTGATCCGTC	alt_5829_new	10	17	18	10	15	11	14	6	13	8
GGTCAACATGTGCCAC	alt_5829_new	14	38	23	18	33	29	40	16	45	6
CTACGGGCTTACATCA	alt_5829_new	98	171	115	97	175	94	151	102	186	84
CGATTGTGGTCATACT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CTTAAATAATAGTAAG	alt_5829_new	0	2	1	0	0	1	1	0	1	0
TCATCACTCTAGGGGC	alt_5829_new	10	17	15	16	17	14	17	15	16	10
GGCCATTGACATCCGG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
ATCTGCAAAACGCTCC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CACCGAATCTATGAGG	alt_5829_new	12	22	25	10	22	12	21	14	30	14
CGCACCGTCTGATGTT	alt_5829_new	15	73	25	21	76	8	77	21	87	15
GATGCGCCTTAGCTAC	alt_5829_new	128	242	173	128	231	103	283	114	276	133
GGATATTACGACAGCT	alt_5829_new	29	33	36	18	38	25	51	31	38	23
ACAACGCCAATACAGA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TCCGTTACGACGGAGT	alt_5829_new	15	32	25	23	35	15	27	11	27	15
ATTGGCTTGCCGCTAT	alt_5829_new	29	45	44	23	43	28	45	35	50	13
CCTTAAAATACCATGT	alt_5829_new	35	71	29	36	68	33	69	26	91	18
CTTAAGTGCAGTGATT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
ACTAACAGGGGCACAG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTTTGTGATTCCCCCG	alt_5829_new	31	62	25	24	50	26	43	26	51	21
GGGGAGGCTTCGAATG	alt_5829_new	40	96	73	42	96	43	113	61	123	40
TTCTCCCTTTATATCT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTTACTTTCAAAGGTG	alt_5829_new	37	57	49	29	57	27	48	19	69	23
TCCTGGACAAGGGCGG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTACTGGGGCTCCTAT	alt_5829_new	48	97	60	47	100	47	105	38	107	40
AGCGCACATGGTGAGC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CTTACCTCACACGGTT	alt_5829_new	4	6	7	2	7	2	5	4	7	4
TACTGCTTTCTTAATA	alt_5829_new	3	12	9	8	11	8	12	3	9	4
GTAGAGGATCTTGCTA	alt_5829_new	15	31	21	17	37	23	26	15	39	20
GATAGTCTAATTTGCA	alt_5829_new	15	52	32	22	60	23	64	28	48	29
AATTGCCCCCCGCCAC	alt_5829_new	5	22	12	10	12	6	10	7	16	7
AAACTCTAACGTCTGG	alt_5829_new	25	38	11	26	43	28	39	25	48	19
AAGTATCTTGTAACTG	alt_5829_new	2	10	3	2	8	3	5	4	5	2
AATTCGTTGCGTTTTC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TACTTTTGCGCTTGTT	alt_5829_new	17	23	16	10	9	15	16	8	32	13
TGAGTACTCTGCTCTG	alt_5829_new	10	18	10	9	13	8	17	11	8	5
CATGCGTTTGTACATT	alt_5829_new	3	9	5	5	11	10	17	2	11	4
GCAATTTAATGAACTG	alt_5829_new	8	29	22	20	32	18	37	17	39	11
CGGGATCATGACGTAT	alt_5829_new	2	8	4	7	9	6	11	3	7	6
CACGGCCATTGTCATC	alt_5829_new	10	9	10	14	14	11	12	2	8	3
ATTTCGTTTTTTCTAC	alt_5829_new	0	0	0	0	0	0	0	0	0	0
GTTCCCGTTCATCGTG	alt_5829_new	3	13	12	6	11	2	12	6	8	2
AGCCAGGTTGGATTAC	alt_5829_new	36	67	46	49	61	39	79	46	88	37
CAAATCGCGCGAGGCT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CAGTTTCATATTCTCG	alt_5829_new	0	0	0	0	0	0	0	0	0	0
CGCCGGCGCTACTCGT	alt_5829_new	26	31	26	23	41	14	15	14	36	13
TGTAATCCCATACCGA	alt_5829_new	53	101	79	70	90	61	105	62	101	46
GGCCTTATATTGGCGA	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TTTACTAAATTAAAGG	alt_5829_new	13	19	16	15	19	19	26	19	24	10
GTGCTTGATTGTTCTT	alt_5829_new	30	38	24	24	42	16	55	15	39	15
TGTTGGGACGTTAAAC	alt_5829_new	66	111	77	72	103	58	100	62	129	50
CGAAAATTAGGTATCT	alt_5829_new	104	142	115	90	153	98	174	85	144	99
AGAGTAGGCAAACTAC	alt_5829_new	21	35	30	16	48	17	37	19	54	16
GCACGTGACCAAAACT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
TCGATATCCAGATTTT	alt_5829_new	0	0	0	0	0	0	0	0	0	0
GTTGACCCTGTTCGAA	alt_5829_new	5	7	3	2	10	6	12	3	6	6
CGCGCTACCTGCGTAG	alt_5829_new	37	91	42	30	75	29	76	32	78	36
AGGAAAACATTTTGGA	alt_5829_new	91	126	115	107	179	96	138	96	144	87
TTGGTGCAATTTATAC	alt_5829_new	115	255	119	103	239	97	248	86	344	90
CACCGTATATCGTCTT	alt_5829_new	1	3	0	1	1	2	6	1	2	2
GGCCCGCTTGAGGCTT	alt_5829_new	5	7	5	10	8	5	11	5	8	4
CGGCCATTCACCACAG	alt_3262_reverse	208	161	248	189	171	219	167	196	173	198
GTTCATTTAGGATATA	alt_3262_reverse	4	7	6	9	12	5	6	6	14	4
TCCTGGGTCATTTGCA	alt_3262_reverse	70	78	87	83	85	63	77	50	79	70
TAAATCGCCGCTTGCG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GAATGATCTGCTAAAC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCAAAAGCCCATTACC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTCAGCTGCTTTG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTCAAGGTTCGT	alt_3262_reverse	6	14	17	12	8	10	18	5	16	8
TAGCGCCGACCCGGCC	alt_3262_reverse	79	71	94	62	90	54	77	71	96	86
TGATTGACTCTTATGA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TATGCTTGCAAGCATC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCATGGAATTTCCCGG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TAGCACCCATGTACAG	alt_3262_reverse	23	17	22	33	22	29	23	21	35	31
TTTGTGCTCGCCATAC	alt_3262_reverse	53	79	72	75	94	70	81	74	80	52
GGTCTGAAAGCGTTAA	alt_3262_reverse	21	33	23	34	19	18	23	23	25	33
TACCCCAGAGCAAGCC	alt_3262_reverse	51	47	43	53	42	38	39	45	41	28
CACTTGCCTGGCTTCA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GTAATAGTTAGAAATC	alt_3262_reverse	28	41	36	36	34	36	37	28	35	27
CTTTCTGGCATGTACC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGCATCCCGGCG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAACACGTCTTAC	alt_3262_reverse	32	49	53	35	48	28	42	38	46	39
TAGACCCACCCTTTTT	alt_3262_reverse	9	8	19	23	7	14	14	10	14	14
ACAGGGGTCGTCTCAG	alt_3262_reverse	155	151	199	191	151	136	155	192	157	155
ATATTGTCTTTTTCCT	alt_3262_reverse	19	7	12	17	19	8	11	10	12	9
GATGATGTGGTATCTA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTTTATTGTACTTTTG	alt_3262_reverse	89	93	100	84	81	96	78	82	127	89
ATTAGCCGTACTATTT	alt_3262_reverse	8	14	18	14	10	8	12	13	12	11
GGCACACCTTCCTACC	alt_3262_reverse	13	23	26	25	20	10	23	21	20	19
AGCACTCGAAAGCCTG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGGTTTCTTATTT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGTGGCTTGTCGC	alt_3262_reverse	6	5	8	7	10	5	5	4	3	1
ACCTAGATGCCCGGCC	alt_3262_reverse	37	66	78	57	43	51	42	48	51	66
AGAGAGTCTCGTGGTG	alt_3262_reverse	34	28	31	32	34	36	26	24	37	30
CAAATTTCGCGCCCCC	alt_3262_reverse	35	27	27	31	26	24	29	17	16	29
GCGGACTCCGCTGATA	alt_3262_reverse	11	7	9	13	17	10	7	6	8	13
AAGCTGCATGTAAGAA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
ACGAAGTACAGGGAAG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTCAACTTATGGCAGT	alt_3262_reverse	30	30	39	26	39	19	29	22	22	24
CATATCTAAGCGCCTG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GAATCCCGCTAGTGCG	alt_3262_reverse	56	49	54	56	53	51	60	38	52	60
TGTAAGTCACGGGGGA	alt_3262_reverse	44	29	40	39	36	37	47	33	35	37
TTCGCGCTTTTACCCC	alt_3262_reverse	11	9	3	8	7	10	5	6	4	3
CTTCGTCACTCATTCG	alt_3262_reverse	8	6	2	9	2	4	7	5	9	3
TAGTAACTCGCGCGTT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
AGAGATCCCGTTAGCA	alt_3262_reverse	113	85	106	99	101	78	62	82	73	76
TTGTTTTTATGAGCTG	alt_3262_reverse	36	53	45	52	48	43	58	37	57	44
AACTGCTTAATTCTTA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
AGTAATTCGGCGTTGA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCTCTCATGTCCG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATAGACGGTGGTCATG	alt_3262_reverse	14	22	13	11	13	15	14	11	16	12
CTTGGGCGGCGTCTAC	alt_3262_reverse	23	29	32	27	30	26	28	27	25	29
GCTGTGAATTTTATCT	alt_3262_reverse	112	89	106	115	88	85	99	81	92	91
ACATTCCCTAGCCTCG	alt_3262_reverse	3	6	7	2	8	1	9	5	5	3
CTCATATCCGGATCAC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTAGCGATTGTC	alt_3262_reverse	33	31	28	33	33	32	19	27	24	25
GGTTTTTCATTTCATG	alt_3262_reverse	38	31	34	39	45	37	25	35	38	30
TAATCTACGTCACGCC	alt_3262_reverse	1	1	1	2	3	1	0	2	1	2
TCGATATCTTCTCAAC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCTTTCGAGGTTT	alt_3262_reverse	15	9	16	9	7	6	7	6	8	7
GGTTGCGGGTATACCA	alt_3262_reverse	91	94	97	103	134	88	88	97	108	76
AACTTTAGACCGGAAT	alt_3262_reverse	68	42	79	77	50	64	56	53	58	58
TCCCGATTGGCTCTAG	alt_3262_reverse	71	62	58	64	69	62	71	53	64	66
TTAATAATCAATGCCA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTGCTGTACATAT	alt_3262_reverse	26	18	18	14	18	20	15	19	19	12
CCGATGATATATTGGT	alt_3262_reverse	41	38	52	35	36	28	40	40	42	24
ATTTTACAGCCGATTG	alt_3262_reverse	23	17	26	7	23	13	26	18	18	23
CCTCTCCTCCACGGTC	alt_3262_reverse	47	34	43	47	33	41	33	40	40	53
GGGGTCCTTTCATAGA	alt_3262_reverse	85	51	92	63	59	71	60	67	66	45
CGATTTTGCTATCATA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGATATGTATTCG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCTACCGGGTCCATTT	alt_3262_reverse	14	18	10	12	13	15	18	24	11	10
TCTTAGGTATGAGATA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTGGGCTCGTGTT	alt_3262_reverse	30	52	38	42	34	45	31	35	38	33
CCGTAACTGATTGGCG	alt_3262_reverse	46	33	56	33	39	31	35	31	40	38
TGTGCGGTCTCACAAT	alt_3262_reverse	51	46	53	62	49	66	64	55	49	45
CATTTAAAGCTGTCCT	alt_3262_reverse	14	5	13	25	19	17	19	18	19	16
ATCGATTATATTATTC	alt_3262_reverse	34	18	48	23	33	28	29	30	19	39
TTACCTCGGCAGTGTT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGGTCCTCGCGGG	alt_3262_reverse	115	149	174	159	133	123	137	108	139	123
CTCGAGTTTACCCCAT	alt_3262_reverse	54	45	48	59	58	42	33	41	50	37
CCAACATGTGATTGTC	alt_3262_reverse	13	19	16	28	21	16	17	12	22	10
TGTGATAAAAGTATAC	alt_3262_reverse	18	9	14	11	13	12	7	14	14	12
ACTGCTTTGACTGTTG	alt_3262_reverse	117	189	137	130	185	107	197	107	175	110
AGACATCAAGCGTAGT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TAATGCGCGGTAGGCT	alt_3262_reverse	33	42	43	26	40	46	36	35	43	34
AATATAACATAATTTG	alt_3262_reverse	15	19	21	19	8	21	14	16	27	19
GAAGGACCGAAAGCTG	alt_3262_reverse	8	18	26	19	17	15	11	6	11	13
AGTTAAGATTATCTCC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TAGAAAAATCAGCCAC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTTTATCAGAAAA	alt_3262_reverse	53	39	35	63	33	41	42	41	36	43
GCTCATTTTTGGGACC	alt_3262_reverse	10	17	16	15	10	19	17	12	13	19
TCTCTAGTTTCTGTTT	alt_3262_reverse	27	23	37	30	18	25	26	27	28	21
GAGAGTCATGGCCCCT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTTTTTGGCAGTA	alt_3262_reverse	69	92	99	65	73	76	88	87	92	80
GAGAATCGCGTGACGC	alt_3262_reverse	78	67	93	75	47	84	64	59	55	76
CCAGCTTTGGAGTCTA	alt_3262_reverse	6	13	7	8	6	6	5	10	7	7
CCACGACAAATACGCG	alt_3262_reverse	19	18	22	24	25	19	18	16	22	17
CGATACCACTCGCTCG	alt_3262_reverse	29	21	31	32	34	41	31	27	52	25
TGTCTTTCACACCTGG	alt_3262_reverse	6	12	7	8	10	10	8	9	11	9
GGATCCGGCTCTCTCT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GTTAGTCTAGCTCTGC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
CCCATGATCAAATGTC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
GAGAAGGACAGACACA	alt_3262_reverse	72	60	88	87	65	88	63	54	68	78
TCTCTATGCTGGCTTC	alt_3262_reverse	41	58	61	44	44	32	52	33	36	35
GCGCCTTGTGTCTTGG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTACCTGCGATT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
ACGTAACTGTGGAATC	alt_3262_reverse	41	43	54	38	48	46	41	44	45	42
CTTGGTTCTGATAATG	alt_3262_reverse	5	4	8	4	10	18	12	9	10	14
AAAGTAGCCATAAGTT	alt_3262_reverse	29	32	39	28	42	29	44	23	55	30
CGGCAAAATCGTTAAT	alt_3262_reverse	53	43	56	34	44	37	42	35	64	40
CCAGTTCTCGTGCTTC	alt_3262_reverse	18	18	16	16	14	15	8	13	27	10
TAGCCATGTTTCGCGA	alt_3262_reverse	13	11	15	10	19	17	19	12	15	12
ATTCAGGCTTCTATGT	alt_3262_reverse	27	28	38	24	30	25	29	24	34	35
TTCCCCTTATGGCTAG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTTGACGTTTTGT	alt_3262_reverse	24	26	35	41	23	26	34	27	24	29
TCTCGTAGTAGAAAGA	alt_3262_reverse	88	86	87	86	67	73	86	58	90	52
ATGGATTTTTATGTTA	alt_3262_reverse	9	3	12	5	6	6	8	14	12	5
CTTTAGACCTATCCCG	alt_3262_reverse	4	6	15	6	4	9	8	7	6	4
CGCACATCTAGTTTCG	alt_3262_reverse	36	36	63	59	47	39	49	36	57	39
ACCGGCACAACATTAT	alt_3262_reverse	4	3	5	4	12	6	7	5	8	7
GCCGCATCATAAATCC	alt_3262_reverse	8	11	8	8	8	14	7	4	6	2
CGATTGCCCACGTGTG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGATGTGTATGTT	alt_3262_reverse	9	16	15	22	12	14	19	17	8	12
CGTGGTTTACAGCAGA	alt_3262_reverse	21	16	17	18	13	20	13	22	15	8
TTGCGGCTTGATGACC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TAATGGCCCGGGTTAC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTTCGGTGCGGAA	alt_3262_reverse	20	29	32	23	40	17	23	22	14	16
CTGTTTCTTTCTAACA	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
AGCGAAAGAAGGCGAG	alt_3262_reverse	73	61	92	64	48	82	71	51	82	58
GGAAGTCCTCGACTGC	alt_3262_reverse	64	67	97	90	68	56	97	72	66	86
AGCTTAAATCCCTTCT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
CACAAACCCACGCTAC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
ACTTATTTTTTCCAAC	alt_3262_reverse	64	76	63	68	79	69	81	56	85	59
CACCCGATGGTTTAGG	alt_3262_reverse	10	8	12	7	11	8	8	4	7	9
TACTTAATGGAGTTTT	alt_3262_reverse	21	33	26	24	25	17	16	16	25	20
CGTGCGAATCGTTGTT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTGACCCCTAGTATCG	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TTATCCTTGCAGTAGA	alt_3262_reverse	34	34	36	40	27	46	25	34	26	28
GTTAACAGTCTCGTAC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCCCGACTCTATC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
CGCATTCTGTTGTACA	alt_3262_reverse	107	115	127	112	132	91	130	104	117	111
ATTGATCGCCGGTGCA	alt_3262_reverse	37	25	28	29	28	32	47	27	32	27
TAATGGGTTAAGGAAT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
AAAGACGCTTTAGTTC	alt_3262_reverse	66	78	92	67	83	66	80	70	85	73
GGCTTATTGCTGATCT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TATCTATTGCACGTAG	alt_3262_reverse	5	5	8	6	10	5	8	13	8	13
ACGCTGCGGAGTTTTC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGTTAACGATAGA	alt_3262_reverse	29	21	15	15	29	12	17	19	14	10
TATTATCCGATATCTA	alt_3262_reverse	35	36	51	53	50	51	38	40	44	46
AGCTTCGCTGAGTCGC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGGCCACTTACTG	alt_3262_reverse	16	10	17	16	15	8	9	19	23	13
CTGGATGTCGCCTGCT	alt_3262_reverse	151	108	142	132	93	144	113	131	107	119
GTATGCATCGTCCAAT	alt_3262_reverse	6	7	7	6	5	7	2	4	7	5
TATCCATTTTACTTTC	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGTGACACAAAGT	alt_3262_reverse	0	0	0	0	0	0	0	0	0	0
AAATTAGCCACTGGAT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGGGCATTTATAC	ref_3951_fdr	49	46	73	51	46	50	56	41	54	45
GCGTCTGATTTAATTA	ref_3951_fdr	12	13	16	11	10	11	16	13	11	11
TAGTTAAACTTATGAC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTGTTTCTTTCC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTAACTCTTTTTT	ref_3951_fdr	116	92	136	112	92	114	93	123	81	139
GATCTGCCAGTCCAGC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCACTTGCTTCTGCGG	ref_3951_fdr	3	6	12	7	9	6	6	10	7	5
GGACCACGGTGGGAGC	ref_3951_fdr	20	12	30	25	16	24	8	24	23	20
GTCAACATCCAAGTCC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTATATACAGAAT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GCGTACTGGGTATACG	ref_3951_fdr	0	0	1	0	0	0	0	0	0	0
ACTCCGTAATACATTC	ref_3951_fdr	0	3	0	1	0	0	0	0	0	0
CATGCATTTCGAAAGT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATCCGCGTTCGT	ref_3951_fdr	12	6	9	5	4	6	4	7	9	9
AGGGAGATTACTGTGG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGTCTATGCAGAA	ref_3951_fdr	35	35	36	37	55	31	51	55	41	25
AACCAGCTCCGTGGCG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTAAGGAATTCTT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GAAAATTCACTGCGCA	ref_3951_fdr	44	53	82	65	53	59	46	48	51	56
TAACTATTGGACATTG	ref_3951_fdr	28	27	27	24	28	28	25	32	25	24
CCCGCAGCCCATAAGA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGTGATGTATTT	ref_3951_fdr	17	12	15	10	11	11	6	15	16	10
GTACCCTCTTCATCTA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTATTACACTCGC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTGATCCAGCGAC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGCGATCGGTAATTCT	ref_3951_fdr	6	1	7	6	1	10	2	1	3	5
GTTGGAGTTAGTGTCA	ref_3951_fdr	14	10	27	28	20	27	28	18	32	25
TGGTTGCTGCCCTATG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGTGTAGAAGGGT	ref_3951_fdr	26	16	30	23	23	16	13	21	26	15
AGATATGGCACTGACT	ref_3951_fdr	31	26	57	46	45	35	35	46	29	34
GTACCAGGTAACATAG	ref_3951_fdr	4	4	2	0	2	2	7	2	10	1
TTAAGTCACTATTTAC	ref_3951_fdr	22	28	28	19	37	23	19	18	28	26
CGGATCGTATTATTCA	ref_3951_fdr	78	92	93	82	97	84	78	96	116	79
TTTTAAGAGGCATGGT	ref_3951_fdr	81	83	117	92	87	84	88	83	115	76
AAGTGCTCACTTAGCG	ref_3951_fdr	13	26	30	37	32	16	23	26	16	18
ACTTTTGATACAGCTG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGAATTTGGCGGTCAT	ref_3951_fdr	32	24	31	32	33	25	37	42	38	28
ACAGATGTATGGTCTC	ref_3951_fdr	46	48	30	33	27	45	40	23	33	32
CCGAGCTCCCACTTGC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CTATGCCGGGGCTACC	ref_3951_fdr	2	2	0	1	2	2	2	5	2	8
TAGGGTGGCTTCTTGT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGGATTACGGGCT	ref_3951_fdr	3	2	7	5	3	4	4	3	7	4
AGATTTGAGAACTAGC	ref_3951_fdr	9	5	22	18	6	11	4	6	3	6
GAGTATGTCCCCACCG	ref_3951_fdr	6	1	3	6	6	4	5	8	9	2
TATCCCTTTTGGCGAG	ref_3951_fdr	54	67	63	54	77	47	87	53	72	44
AGACCCCGCTCGAAAA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGGTTTCGTCGGG	ref_3951_fdr	2	5	4	11	4	7	4	3	12	3
AGAGACCTAAGGGCAT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGGACACTTCTAT	ref_3951_fdr	21	27	22	36	30	24	29	30	49	24
GTTCTTTTGTAACGCA	ref_3951_fdr	16	25	25	15	20	14	30	23	25	23
ACTACATTCTTTTTGG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGGTGGTAATGTT	ref_3951_fdr	21	17	40	33	9	26	25	18	18	18
CGAGAACTTCGTCACT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTAAAATGCGTTG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CGCGACCTCAATACAA	ref_3951_fdr	34	23	31	31	29	18	28	20	33	26
TGGGTGGTTACGCATT	ref_3951_fdr	3	7	24	9	9	8	5	8	11	4
CTTAGATTGCCCGACC	ref_3951_fdr	13	8	15	9	10	18	9	12	12	9
CCCGATGTCGTCGTGG	ref_3951_fdr	102	78	88	107	102	85	106	76	98	77
AGGATCGAGGTAAATG	ref_3951_fdr	0	2	2	0	3	2	0	2	2	4
CACCTATTGCTCACGA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GTATCCTCCTAACCTC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CAGCCGGCATAAACCT	ref_3951_fdr	5	14	7	9	1	3	7	5	22	10
TTGTTTGTTATTAGCG	ref_3951_fdr	16	14	10	11	9	5	11	11	13	14
GTCTGGAGCGTGTATT	ref_3951_fdr	12	26	23	14	27	24	44	14	44	22
TAATAGGTGGTACCTC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AAGCCTGTGTTCTACC	ref_3951_fdr	10	32	11	14	31	15	20	15	34	5
AAATTTGGCGCGACCC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCAGTCCGGTCGC	ref_3951_fdr	7	14	10	8	16	10	10	11	7	4
GGAGTAGCGATTTGGT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGGTGGGAGATAC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGTAGCCAGTGTA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCGTACTGGAGCT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTTCCTTCCAAGC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GGACAATGTGGATGGG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CTTGAACACCTTGGGG	ref_3951_fdr	48	47	58	38	40	45	46	34	35	46
TGCTTATATTCCCCAT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCTCACAAGGTTCCAT	ref_3951_fdr	9	4	9	2	5	5	5	8	14	6
CTGATCCTCTGTTTTG	ref_3951_fdr	23	40	29	32	41	24	39	28	54	25
AAGCTTGTTTCAACAC	ref_3951_fdr	4	4	4	3	5	5	1	5	2	5
TCTCTTTCATGCTGGT	ref_3951_fdr	3	6	9	5	9	5	4	6	5	5
CTCATACCTGAGATAC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGGTCTACTCTTA	ref_3951_fdr	27	37	45	47	39	29	38	32	39	31
GATCGGGATCTGTACT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGGTGGGAGATGC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTGTAATATAGGTGAC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTCGCCATTGGGG	ref_3951_fdr	3	12	3	3	14	3	18	5	12	6
TTTTTGGCCTCATCGA	ref_3951_fdr	28	15	29	23	32	17	16	24	21	13
GCAGGGAAAAGAAAGA	ref_3951_fdr	54	47	73	66	50	66	41	56	57	58
TATTAGCGTGCGGGCT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCAGGATATGGTG	ref_3951_fdr	56	58	67	54	56	53	56	51	51	56
ATCTCAGACTTCGCAG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCGTCTTCCTAAT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGCAATTAGGATTACA	ref_3951_fdr	2	3	3	6	0	3	3	0	6	7
TTAGTTGTTATTCAGA	ref_3951_fdr	20	17	16	23	19	11	24	18	13	15
TTGATTTGATACATTC	ref_3951_fdr	32	23	24	22	10	18	21	9	15	15
GTCCGGCCTACGTTCT	ref_3951_fdr	25	27	42	35	31	21	25	35	28	21
GATTCGTATACGGCAT	ref_3951_fdr	45	33	39	34	28	39	31	36	37	37
TTCTGGGCAGCGGACA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGAGACCTGAGGGCAT	ref_3951_fdr	27	14	32	32	29	29	29	28	36	22
GGCTGGCTTCAGGCGT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AATGGGGGGAGTACTG	ref_3951_fdr	56	36	39	41	49	41	60	40	47	37
GGTATAGGCGCGTCGC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GATATTTTTCTCTATG	ref_3951_fdr	40	34	52	46	26	53	25	32	31	48
TCCGGTCTCGTTCGTG	ref_3951_fdr	0	1	1	3	0	0	0	0	2	3
ATGCACGTGGATGTTC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGGGTTGTCCAG	ref_3951_fdr	164	164	186	111	171	164	165	177	184	138
AGCTCGTCCATCGGAC	ref_3951_fdr	15	19	18	13	18	14	15	18	23	13
GTGGACTTGGCTGGAA	ref_3951_fdr	192	188	238	200	241	201	221	156	235	188
TATTTCGTGCCGGCGG	ref_3951_fdr	15	15	15	10	12	12	8	12	7	12
TCGGGTTCCCATAGGG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGCGGGGCCGTAT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTCAAACGCGCGT	ref_3951_fdr	3	10	9	5	15	12	14	4	12	11
TGTATACACCAACCCT	ref_3951_fdr	40	38	34	24	42	36	34	29	44	32
ATTGTCGGTTGGAAGG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCATATGTTGAAT	ref_3951_fdr	56	68	80	65	65	62	67	74	75	72
GGCGAGTTCTGCCGAT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCAATTCAGTTTT	ref_3951_fdr	31	26	31	26	16	29	31	26	24	19
AACGATCGCGCCGGAA	ref_3951_fdr	31	30	52	33	39	32	38	35	22	31
TATTTCATTCCATGCT	ref_3951_fdr	3	10	4	5	6	5	3	9	5	6
TCTCCCCCGGTTTCTT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTAAGGCCCATGC	ref_3951_fdr	19	44	22	15	56	18	47	12	75	20
GGAACACTAGTTGCGA	ref_3951_fdr	34	22	28	19	25	22	20	25	43	26
AGGTTGCTGCCCTATG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGATAAATGGGAC	ref_3951_fdr	27	11	34	21	13	22	27	22	12	25
AATCACCGGCCTCCAC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GATGTAGTTCGTAAAA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTACCATTTTATTTGA	ref_3951_fdr	9	6	9	6	5	8	6	5	11	9
GGCTTAACGAGCTGCA	ref_3951_fdr	9	6	6	3	6	2	3	1	4	2
CTTGTTTTTACCGAGG	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCCACATGAGGCA	ref_3951_fdr	9	12	12	13	7	5	16	17	17	9
CTTGGATCGCGATACT	ref_3951_fdr	18	25	27	11	18	29	26	26	28	27
TTACCCGTCAAACGCG	ref_3951_fdr	13	14	15	16	15	10	17	14	18	15
ACTACTATTGTTTATC	ref_3951_fdr	28	16	25	20	20	17	13	23	24	18
TCCTTGTGGACTGCCC	ref_3951_fdr	16	44	33	21	44	17	52	19	41	17
GCTCAAGTGTCTAGTC	ref_3951_fdr	17	19	34	17	20	12	28	13	16	11
AATGTCTGTTGGCCTA	ref_3951_fdr	11	22	26	24	25	16	30	21	18	16
TGGATTGCTCTGCCAA	ref_3951_fdr	42	35	55	27	34	29	39	32	42	33
TCCTTCAGTCTTCGCC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GATTTATTTAGTGGGC	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCCTCGTTTATTT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
TAATTGTATTCACTAG	ref_3951_fdr	30	30	30	32	36	28	29	31	37	32
ACTTGGGGTTTCCGTT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTGATTCCCGGGT	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAGTTTGATCCCG	ref_3951_fdr	27	31	23	34	21	26	27	32	37	25
CTTCTTGACCAATCCA	ref_3951_fdr	0	0	0	0	0	0	0	0	0	0
AAACGTCCTAATCAAT	ref_3951_fdr	18	16	13	12	10	14	17	6	7	15
TAAACGTTAGGGCGTC	ref_5888_new	79	111	82	53	110	77	111	88	133	62
TCTCAAAAAGTCCGCC	ref_5888_new	28	26	27	21	24	20	31	31	45	18
CGTGAGGGGCACAGTG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CGGGCTTCATCTATCC	ref_5888_new	4	8	6	9	5	7	14	9	16	5
TACATCTACGCTTCAT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CCTGTATCATAGCAAT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
AGCCTTATCTTCGGCG	alt_5888_new	41	61	41	37	62	43	67	50	77	29
TTCACTCTGTCATCAA	ref_5888_new	22	54	34	39	46	28	42	28	54	23
CAGAGGACTGTACGTT	ref_5888_new	11	27	22	18	37	16	38	14	33	25
TATCGTTGCTCTTTGG	ref_5888_new	52	89	63	61	95	41	70	47	83	61
TATTATCATCAACGTG	ref_5888_new	32	38	48	23	60	43	68	34	63	28
TTGATCTAAGTCATTT	ref_5888_new	17	17	13	7	24	12	23	12	18	12
ATCCCCGCCACGCATC	ref_5888_new	53	96	84	61	84	74	82	61	77	51
GCCTGCGACGTCTGAC	ref_5888_new	41	38	26	32	70	28	52	29	70	30
AAGAGATTGCTTATGG	ref_5888_new	7	6	6	13	4	15	11	5	8	9
TCTTGTATCCGAGCTA	ref_5888_new	16	17	7	9	17	7	16	11	28	6
CGTTGTATCACGATGG	ref_5888_new	9	16	15	18	14	11	19	5	25	13
GATTTCAAACACGGGA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CGCATTGTTGGCGCCG	ref_5888_new	11	19	7	10	12	11	11	3	20	8
TTTTCGAATCCTTTCT	ref_5888_new	9	5	15	8	12	4	17	12	14	14
GGTGGCACGGCTCTTA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GGTGAATGGGGGGTTG	ref_5888_new	3	5	3	3	3	3	7	4	3	1
GGGGAGTCGTAGAGTA	alt_5888_new	16	44	11	22	25	18	25	18	23	30
ATTCTTAGCTCATCGT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TGGTTGTTGGGGGGCT	ref_5888_new	18	25	25	24	14	11	21	20	12	16
GGTATACTATTTTTAA	ref_5888_new	24	22	27	21	34	29	22	23	22	19
GTTCGAATCATCGTTA	ref_5888_new	23	22	17	18	31	23	31	14	30	24
GTACAAGGACTAGAGG	ref_5888_new	88	108	98	80	138	68	121	94	140	76
ATGAGTAATGTGTTAG	ref_5888_new	11	23	10	15	17	9	35	14	13	6
TGTCGGTACTATGATC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ATGGGCCAACATCTGC	ref_5888_new	15	27	28	27	30	26	35	15	29	25
AGATGAGGTGATTAAT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
AGTGTTTCTGACCCAG	ref_5888_new	51	72	55	56	67	46	80	50	97	39
TCCCCATCGGCCCCCA	ref_5888_new	8	8	10	6	18	10	14	6	16	8
AGGGCATGGCTCATGA	ref_5888_new	16	15	19	13	17	10	9	12	23	9
TTTTGTATCGGGAGTT	ref_5888_new	27	28	23	23	35	22	45	17	47	26
GAACCCGGGTTTATGG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ATCTTAGCCGATCTCG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TCGCTGTATTACTAGA	ref_5888_new	23	42	19	19	27	21	34	24	35	20
AATATCCGGTTTTCGG	ref_5888_new	8	18	12	11	14	9	20	15	13	13
TGGACGTGTGGATGTG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TCCATCCCTTGGTCAG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GTATTCTAGCTTGCTC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
AGACTTTGTTTTACTT	ref_5888_new	4	0	3	1	0	1	3	2	3	1
CGCATTGTTGTCTATA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GGCTGGAACGACGTTA	ref_5888_new	13	18	22	14	16	18	24	16	27	7
CGAGCAGGTTGGTTTG	ref_5888_new	13	21	12	10	24	16	24	9	29	19
ACGTTAGCGTTAGGAG	ref_5888_new	13	19	24	15	17	13	38	16	21	13
TCTTGCGATGATATTA	ref_5888_new	49	40	48	29	45	26	49	29	44	38
CCACCTCTGTTTCCAC	ref_5888_new	25	46	35	30	51	23	47	26	51	22
TGATGAGGTGATTAAT	ref_5888_new	45	43	69	60	79	41	78	54	56	50
AATAACTTTCTCGCTG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GAGTATTCATCCGACC	ref_5888_new	9	18	26	11	17	17	22	14	31	11
TCTTGGACTCATCAAG	ref_5888_new	41	50	37	39	39	35	41	28	48	26
TGTCACCCGTGTACAT	alt_5888_new	4	3	9	5	5	5	6	9	12	7
GAAATGCATGTTTTAA	ref_5888_new	19	33	41	27	36	31	44	17	31	17
CCAACAATGACTCCAG	ref_5888_new	106	147	102	109	146	77	159	86	151	69
ATATCTAGAACAGTTG	ref_3315_fdr	0	0	1	0	0	0	0	0	0	0
CGGCACACTTGTTTCT	ref_5888_new	65	104	90	81	91	82	88	81	95	62
TTTTGCCACACTTGTT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CCTTATACATTCACTG	ref_5888_new	0	0	0	0	1	0	1	0	0	0
TCACTTGCATTGTTCA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ATCAGCCCGTAACGTA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TTTATGTAAGTATCTT	ref_5888_new	4	4	3	2	5	5	6	3	7	1
AGTGAACGCTCACCCG	ref_5888_new	21	35	24	17	26	22	41	7	40	16
TTGACTAGAACGTCCT	ref_5888_new	2	7	2	4	12	7	7	4	10	3
GTTAGTTTATTTGGTA	ref_5888_new	10	11	15	17	11	13	18	6	16	7
AGGCTGGTGTTTACAT	ref_5888_new	27	32	24	26	34	20	25	19	39	12
ACTTCGTTGTCGGCAG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
AGTGTTATCCCAATAT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GCGTTCATCACGAATC	ref_5888_new	2	5	2	3	5	3	6	5	0	1
GATCCTGCGTATGAGT	ref_5888_new	22	47	36	12	33	22	34	22	36	23
ATGGCCCTGCCATGTC	ref_5888_new	34	43	27	32	40	26	37	22	55	19
GATGGGGCCGTGTGAT	ref_5888_new	2	9	4	5	8	4	8	5	9	6
CGTATTTTTAAAATGA	ref_5888_new	15	9	12	18	11	6	13	10	11	10
ATATGAGTGCGTATTC	ref_5888_new	22	39	37	21	40	21	40	20	40	18
TTGATAGTACCGCCTT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TTGCCTTTGTTGCCTA	ref_5888_new	26	46	23	28	61	24	34	18	35	18
TGTGGTCTGCCAGATT	ref_5888_new	5	6	1	3	5	4	9	1	9	4
GCCTGGTTGTTTGATC	ref_5888_new	9	15	9	14	11	10	12	8	21	6
TCACACATCGCTTGCG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TGCCTCAGGCTCACGG	ref_5888_new	15	20	14	20	21	15	19	13	13	14
TCTCGCCCTGAAAATC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
AAAAATTCATGACTTC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GTACCTGCCATCGATT	ref_5888_new	40	52	62	34	62	41	69	41	65	39
CGGAGGCTACACGACT	ref_5888_new	3	8	8	7	3	5	2	4	8	5
TTCATGTTGGTTTGGC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TTTGCATCGGTTTGGT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GTTTCGTTGTGCTCTG	ref_5888_new	87	126	125	96	136	88	133	82	147	71
GATGTGAAATGATTCG	alt_5888_new	18	20	13	10	13	7	32	10	22	7
CAACAGATAATATCAG	ref_5888_new	5	10	10	5	16	15	21	11	17	4
ACGAAAATCTTAGCGG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TCTTGCCTTAACCAGT	ref_5888_new	5	20	8	14	24	15	22	14	16	18
ACAATGTGCGGTTACT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TTGGCACAAGCCCGGG	ref_5888_new	92	87	93	66	109	57	90	55	84	55
TAACATTATCGTGGAA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ATGGCGGGCGACGCTT	ref_5888_new	32	16	20	21	16	15	20	4	13	23
TTTACTTTACAGTTGG	ref_5888_new	6	2	5	6	4	0	7	9	9	2
GCTTTCTTGTCGTGCG	ref_5888_new	6	14	13	12	12	12	23	10	9	10
GCTTTTCAAGCTTGCA	ref_5888_new	12	15	11	8	7	12	14	5	16	4
ATACCATTCTTGTCCT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GCTGTTCTGAGTCTCG	ref_5888_new	21	27	11	20	24	13	23	11	26	12
GAGCAACAACCTTTTT	ref_5888_new	16	19	12	20	22	23	26	10	20	14
ATTAATAGTAATTGTC	ref_5888_new	9	9	6	6	8	6	14	2	8	5
ACTTTTTCTGTATAAG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ACTACCCATTCGGTTG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ATTACACTTCGCCCGC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TGAAACGTCCCTACTT	ref_5888_new	13	24	22	10	23	11	22	16	20	7
GCATTAATACACCTTG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ATATCCTCCCGCGGCA	ref_5888_new	34	60	25	16	56	20	34	20	38	25
CCAAAACTACAGCACA	ref_5888_new	18	34	30	18	33	20	30	19	40	19
CCCACTCCGTTAGTAG	ref_5888_new	2	6	1	3	4	3	3	2	6	4
GTGCTATTCGTTCGTT	ref_5888_new	6	8	5	3	6	2	6	2	6	8
CTCCTGCCCCTTGCAG	ref_5888_new	3	11	4	2	10	5	8	4	3	7
TTTTGACTTACCAAGT	ref_5888_new	1	11	5	3	4	4	7	1	18	5
CTCAATCCCCTACCCG	ref_5888_new	2	1	2	2	2	1	2	2	5	4
CGCCGGGGGGCATGGT	ref_5888_new	2	4	4	3	2	4	4	5	3	0
CAATCATGTTGTCGGT	ref_5888_new	22	31	23	28	26	17	25	20	38	20
GTCGTGGAGGCAACTA	ref_5888_new	2	5	6	1	4	1	14	1	6	2
CACCGTGAGGTCACTT	ref_5888_new	12	21	18	16	20	14	12	19	19	11
TTTCAGCCGGGGAGTT	ref_5888_new	23	24	28	15	38	16	26	18	42	11
CCATCATCTGACGAAC	ref_5888_new	7	8	6	5	11	6	10	4	9	7
CAGTTTCGCGCTCATC	ref_5888_new	73	71	81	64	85	63	67	48	93	73
AGGGGAAACTTTCGGA	ref_5888_new	5	10	7	4	8	8	13	7	8	11
ATGACACGCATCGCAT	ref_5888_new	14	14	11	17	15	16	13	15	19	11
TTCTGTGGGGTCCTTG	ref_5888_new	10	21	29	9	24	9	14	10	21	14
CGTGTGATGACTCCAG	ref_5888_new	80	95	62	69	66	72	112	57	84	64
ACCAATACGTTTTGCT	ref_5888_new	14	26	16	18	32	12	24	10	27	15
TTAGGGGAAATTAGGT	ref_5888_new	1	5	4	9	12	5	3	3	8	8
CGACGTGGGTCGATAT	ref_5888_new	13	15	13	16	24	12	15	12	18	18
CCCGGAAATTACGTTT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GCGCCGGCCTTGCCAT	ref_5888_new	27	22	26	28	30	31	27	43	26	23
ACTTAGGTTACCATGA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GCGGACGAGGAAACGA	ref_5888_new	11	19	17	17	20	23	23	17	23	21
CCTTCGACTCTTCGCC	ref_5888_new	5	6	6	6	3	3	7	5	7	6
ATAGTTTTCGGTTGGG	ref_5888_new	11	14	16	12	17	6	19	15	21	11
AGAACGTCTTACTTAA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CTTGCTCTATGATAAC	ref_5888_new	34	39	28	25	46	26	62	22	58	26
TTTTCCTGCATTATCA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CTAGCTTTTACTGACA	ref_5888_new	10	12	15	9	21	8	26	10	22	7
TCGAGATTCTCGACGT	ref_5888_new	7	8	8	7	18	1	10	9	13	7
GAATCTGAAAACGATC	ref_5888_new	6	36	16	18	10	26	25	8	37	13
TAACCCTTTTCTCTGC	ref_5888_new	2	3	8	2	1	4	5	9	5	4
TTCCATCGTCGTCTTA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ATACAACCTCCAACAA	ref_5888_new	15	25	21	13	16	6	12	10	19	12
GAAGCCCCTCCTATAG	ref_5888_new	9	16	18	10	19	6	17	12	19	11
GGGCCTCATTTTTTCG	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TTCGTGGATTAGCGGT	alt_5888_new	5	3	10	7	5	1	4	2	7	5
GAAGGTAGCAATTAGG	ref_5888_new	5	5	13	6	5	12	11	2	12	5
TCGGTCAGCCAAGGAT	ref_5888_new	1	4	2	1	4	2	9	1	10	1
CCTTGGTTAGAGATTG	ref_5888_new	66	79	79	69	97	55	109	49	88	44
CCCACTCCACATTTCT	ref_5888_new	11	24	6	13	13	5	14	6	7	9
ATGTCGGCAGCAGAAC	ref_5888_new	22	35	22	33	32	23	33	18	32	30
TGGCCAGCTACCGGCG	ref_5888_new	44	47	51	53	63	47	66	41	60	29
AAGCAGGCCGAATTCC	ref_5888_new	32	22	21	30	26	23	43	27	38	19
CAGATCTTCCCATCAC	ref_5888_new	77	88	89	72	118	70	104	67	106	66
TGTCGCCTCTCATACC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CGTCTAGCACCCGTCC	ref_5888_new	28	26	26	25	26	16	35	18	31	18
TCACAGGGCCCAGCCA	ref_5888_new	22	23	19	19	22	24	29	26	21	30
CTGCCGGCCTAACACT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GGGGGATCGGCGATTC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
TACAGATGCACGTTCC	ref_5888_new	49	94	60	56	77	39	75	56	76	46
GTTTTGCCCGCCCTCA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ACCTTTAGTGTAACCG	ref_5888_new	9	27	15	9	21	4	23	14	15	9
TCGGCATGTATCATCA	ref_5888_new	17	15	22	16	29	14	20	18	24	17
TTTCTGGTTTGGTAAT	ref_5888_new	19	39	37	19	30	35	43	24	49	19
CCTGGTTGTGGGGCTA	ref_5888_new	10	27	12	8	23	13	25	11	22	16
TCTGATGCTGTAATGA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
AATCTACCTGTCAATC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
GCCCTGGTGGTCAGCT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
ACAGTCTGAGCTAGTG	alt_5888_new	51	53	63	56	82	41	73	69	63	58
TTGCAACACTTTCGTT	ref_5888_new	103	178	164	120	189	134	172	104	202	96
GATTTCGGACGTGTGA	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CCAACTCTGTATCATA	ref_5888_new	57	98	61	67	76	58	89	52	95	47
TTTTACACACCCACCC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CTCTTTGGTTCAGGGC	ref_5888_new	28	22	29	29	19	14	31	16	28	14
GACACTGCGTAAGATA	ref_5888_new	9	15	19	6	17	8	12	9	18	16
GCCTGGACCGGCACTA	ref_5888_new	13	28	14	13	30	13	39	11	34	12
CAAATCATTCCTGTTA	alt_5888_new	15	21	24	8	22	9	23	8	23	17
GATGCACAGTCTCGTC	ref_5888_new	5	9	5	2	10	5	9	2	13	9
TCTCCAAGACCACTAT	ref_5888_new	0	0	0	0	0	0	0	0	0	0
AAACTATGTGTGGAAG	ref_5888_new	2	3	0	0	3	1	2	2	2	2
CAGTCGTATAAAGGGT	ref_5888_new	14	31	24	21	28	16	31	11	30	23
TAAGTAGTTTCGCATG	ref_5888_new	54	95	69	66	86	52	99	50	117	56
ATTGGATCATAGGAGG	ref_5888_new	83	128	106	99	107	89	136	75	128	66
CATTCAGGAGGCGTCC	ref_5888_new	0	0	0	0	0	0	0	0	0	0
CAGGCATATCGACTAC	ref_2817_fdr	1	2	2	1	5	2	2	0	5	1
TCTTTATCATACGCTG	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGTAACGATCTTT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
AAGGTCATTTCAATGA	ref_2817_fdr	9	8	11	9	8	16	6	10	8	13
CGCGGTGATGTGAATC	ref_2817_fdr	91	61	96	87	84	82	71	84	83	81
CTCGTGTTTTTAGAGC	ref_2817_fdr	0	2	1	0	0	1	0	0	0	1
GCGCCCAATTGTGTCC	ref_2817_fdr	64	43	55	52	46	45	57	60	51	28
ATGACTTATCGGGAAT	ref_2817_fdr	57	46	67	47	60	76	54	52	56	56
TAGCGTATCTCGCTCT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGCCATGAGGCTA	ref_2817_fdr	155	158	216	181	179	178	137	171	163	182
AGGCCCATCTAGATAC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCCCAGTTGTTCTTGT	ref_2817_fdr	3	3	1	0	1	0	1	0	1	0
AACTTTTGACCCCCTC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CATACTCTAATTGAGG	ref_2817_fdr	51	30	33	44	32	36	29	34	27	29
CCACCATGATCGAGTA	ref_2817_fdr	33	30	29	27	17	19	30	29	33	17
GACCCCATACAATTTC	ref_2817_fdr	4	3	4	14	6	10	5	6	4	7
GCCTGACCCATACGCC	ref_2817_fdr	38	42	58	54	44	37	43	30	43	31
CTCAAGGGTGTCCCGC	ref_2817_fdr	56	44	64	77	55	74	52	68	61	59
AGTAAACAAATTGCGT	ref_2817_fdr	59	41	61	70	34	59	44	54	35	66
CGCGCATCCCGAGTCC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GGTGATTGTCATTAAT	ref_2817_fdr	186	170	234	238	180	176	203	168	177	171
AGGCCGCAGCGTTACG	ref_2817_fdr	18	19	33	34	18	33	16	25	32	20
GCGGTCAGTTGCATTA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTATGTAGTTCGT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCACGATCCTCACTTT	ref_2817_fdr	1	0	1	5	1	2	0	4	2	0
GAGGGTCAAGGTTTTA	ref_2817_fdr	79	68	118	69	71	72	72	71	77	82
CGGGACCCCCTTATTT	ref_2817_fdr	30	14	27	31	11	27	14	23	16	15
ATGCCGGTTCCTGTGT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCAAACAAGGCGC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGTCAATCTTACC	ref_2817_fdr	37	46	43	47	25	28	41	21	41	22
AGGTTTAGTTTGATTC	ref_2817_fdr	5	2	3	2	2	3	1	0	2	0
ATCTCTTAGTCGTGAT	ref_2817_fdr	24	15	31	29	15	17	19	21	20	30
ATTAGACTAGGGTTGA	alt_2817_fdr	60	37	48	50	30	54	32	30	36	41
CTCGTAAGACGTATTT	ref_2817_fdr	105	66	78	92	70	77	81	83	80	109
GTTTTAGAGTACTGTT	ref_2817_fdr	52	56	52	42	32	39	54	33	50	46
AGTAAAGTGAATTAGG	ref_2817_fdr	18	16	19	16	15	14	19	19	12	22
CCCCAACCAGGTAGCT	ref_2817_fdr	20	10	33	25	15	20	15	18	13	16
ACTGCTTACTGAGACA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CGGAACACAATTTTTA	ref_2817_fdr	57	31	76	61	52	41	34	43	48	31
GGTAAGGCATTAAATT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTACCTGAGGTTCAAC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTGAAGTTTGAAG	ref_2817_fdr	71	61	60	60	53	67	63	51	62	34
ACCCACAAAGCACAAT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCTTGCAACGAAC	ref_2817_fdr	38	23	45	39	36	37	43	43	46	42
GGCTTAGTGGCCTGAT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GTAAATTTGCGCAGTA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTTTAGCGCCGAA	ref_2817_fdr	54	49	54	42	59	38	35	43	41	45
GAGTTACTTCGTAACG	ref_2817_fdr	61	75	72	73	62	60	82	52	103	60
CCGGGGCAGCACTCCT	ref_2817_fdr	48	37	45	31	28	42	46	27	33	28
TAGATTCGGTTTTGAG	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TACAAGGCCCCTGGTA	ref_2817_fdr	34	25	53	23	26	44	43	23	29	24
TCTGCGTCCACAAGCG	ref_2817_fdr	11	14	21	16	11	9	9	16	21	12
ACATTAAATGGACATT	ref_2817_fdr	24	26	27	24	22	21	15	17	26	13
ACATAGCGGGAGCGTT	ref_2817_fdr	20	23	27	32	19	33	34	29	17	19
TAACTGGAAAGCCAAA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CATCCCCCCTGGCAGA	ref_2817_fdr	22	13	20	25	17	21	30	23	28	22
ACAAACACTTGCCTTT	ref_2817_fdr	68	63	97	85	75	60	90	60	80	77
CAGGGAGATTAAGCAC	ref_2817_fdr	15	25	24	17	15	11	21	27	25	15
TAAGGACGGCCTGTTT	ref_2817_fdr	60	66	84	70	56	53	48	70	61	66
CTCCCGTTCTGCTCAG	ref_2817_fdr	21	23	25	24	18	25	13	19	26	23
TTCCACTTGTTACGCA	ref_2817_fdr	18	16	15	16	10	10	11	4	9	6
TGGATCACCTGTTTGG	ref_2817_fdr	8	10	6	5	3	9	8	9	10	12
GACTGTGCTTGAATTG	ref_2817_fdr	21	30	30	25	25	22	39	22	33	35
CGACTGCTTTACCTTG	ref_2817_fdr	34	33	29	25	27	24	23	38	34	28
TTAACAATACACGTTT	ref_2817_fdr	55	31	46	54	39	32	30	44	40	33
AGGTGCAACAACTTAT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCGAGCTCATTCC	ref_2817_fdr	39	36	37	31	35	29	40	31	41	29
CCAGCTCACCGTACCA	ref_2817_fdr	5	46	5	3	57	3	39	7	57	2
TGCAATCGTTGAATGT	ref_2817_fdr	42	31	60	35	45	37	45	41	47	38
TGTCTGGCTTGTAATC	ref_2817_fdr	55	46	62	54	29	50	44	44	30	36
TATACTCCGTCGGGAT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GTACGATACTTTCCCG	ref_2817_fdr	63	59	51	56	50	37	53	51	57	56
TGTAAATTTTTCTTCA	ref_2817_fdr	21	11	20	16	24	11	16	12	22	16
ACATGTTAGTATCGTT	ref_2817_fdr	17	7	15	19	10	8	5	8	11	14
CTTATAGCCGTTGAAT	ref_2817_fdr	3	3	7	8	0	6	6	3	4	2
CAGACATAGGCCTTGA	ref_2817_fdr	1	3	1	1	3	1	3	0	1	2
TGCTCAATGTACAGCC	ref_2817_fdr	20	21	27	26	17	19	19	13	13	14
GTATGTTGGTCGGGAA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
ATGAGCCTACATTAAG	ref_2817_fdr	2	6	4	2	9	8	8	6	1	1
CTGTCTAATACATACT	ref_2817_fdr	33	60	44	44	70	27	74	27	51	24
ATCGCCGTTACATCGT	ref_2817_fdr	23	11	19	17	23	19	13	16	10	18
AACCGCTTCGCTGGGT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGGCTTTCGTGAT	ref_2817_fdr	40	40	62	55	39	26	33	44	38	36
ATGAGCCCGATTTTCT	ref_2817_fdr	166	138	213	177	138	146	114	135	133	143
TAGAATTGAGACCGCA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CAATGGAAGACCCTGA	ref_2817_fdr	45	41	36	44	25	33	33	36	30	31
TAATCTCGGCTTCTCT	ref_2817_fdr	42	39	70	53	37	44	39	48	41	39
TTCAAGGAGTAGAACG	ref_2817_fdr	50	42	54	66	52	51	63	42	60	54
CATGAGTAAGATCACT	ref_2817_fdr	42	41	42	34	37	35	33	34	35	22
ATTGAGCTACCAGCGG	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CAACGGCGTATAGCAA	ref_2817_fdr	20	23	30	41	29	29	23	21	32	25
GCAGAGTTTTGCAAAT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAATTGTCTCTGT	ref_2817_fdr	118	97	103	84	92	91	117	93	111	106
GGGTGTGTCTGACGTG	alt_2817_fdr	52	50	80	71	45	55	42	59	48	48
TAACCGGACGAATGCT	ref_2817_fdr	32	23	38	25	21	27	21	35	22	18
CTTAACATTATGCAAA	ref_2817_fdr	29	24	48	32	29	22	32	41	37	42
CACAATGATCACTAGC	ref_2817_fdr	33	22	34	48	22	34	24	41	39	31
TTGATATACAGCGGCT	ref_2817_fdr	58	50	53	63	46	56	56	49	63	64
GCAACACGTCGCCGGA	ref_2817_fdr	4	2	8	2	9	3	5	7	5	6
CGTTTAGTGTAATCGC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTGCAAAGGGATAGGG	ref_2817_fdr	100	79	95	103	81	98	92	105	84	79
GTGTAATGCTCAATAT	ref_2817_fdr	70	61	68	76	63	85	59	60	56	58
TTCTGTGATTTATCAG	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTGCGCGCATCTT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCTGATTGGTATTCGA	ref_2817_fdr	14	27	15	16	13	13	26	19	19	10
TTTTGATGCTTTAAAT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
AAACCCCAACCCAGAT	ref_2817_fdr	132	77	160	131	120	125	125	101	108	108
TCGTGTCCCCGGAGTA	ref_2817_fdr	69	70	84	82	86	80	77	69	97	69
GGAGCTTGTGGCGTGT	ref_2817_fdr	9	7	17	13	17	8	10	8	8	15
GGATGGTAATTCGCTA	ref_2817_fdr	18	10	14	23	9	15	13	11	6	13
CTGGTCTCCGCGCTTC	alt_2817_fdr	5	4	2	0	6	7	1	4	6	4
TCCCTTGGCCGCAAAT	ref_2817_fdr	6	10	6	5	12	7	13	3	13	5
ATTTCTGCTGCGCTTG	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCTGTACTTATGC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CGATCAGTGGGCCGTA	ref_2817_fdr	123	90	155	126	86	111	111	113	94	118
TTTAGAACGTGAATTC	ref_2817_fdr	33	30	39	30	30	29	41	22	35	32
ATGAGGTCTCGTCGTT	ref_2817_fdr	15	10	16	13	10	9	11	17	12	12
GTTGGAGTAAAAAGCA	ref_2817_fdr	137	112	148	143	104	111	110	113	122	91
CTATAATCTGCACGTT	ref_2817_fdr	37	44	63	51	43	46	32	56	37	47
AAGCCGGTTCATTCCT	ref_2817_fdr	70	62	80	67	71	76	74	66	86	70
ACGCAGTTCTGGGCCT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGAGATGCTTACT	ref_2817_fdr	12	15	10	13	12	13	13	11	5	5
TAAATCGTACCGTGTA	ref_2817_fdr	30	44	41	45	34	25	36	35	29	36
TCCTTGCCACCATTTT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGCCGACGCGGC	ref_2817_fdr	20	8	18	24	23	21	18	14	13	15
GGTTTAGGCCACGTCA	ref_2817_fdr	128	68	145	114	90	110	97	90	91	111
CAACCCTGTGTCACCG	ref_2817_fdr	4	6	2	2	5	3	3	3	3	3
ATCTCGGCGGCGTCGT	ref_2817_fdr	36	30	47	30	38	41	34	45	33	42
CGTTTTAGGATTGAGA	ref_2817_fdr	13	16	11	17	10	19	18	24	18	14
AGAAAATACTTACAAG	ref_2817_fdr	38	31	28	21	42	26	46	24	43	19
GTTAGGGGTTGAGGGG	ref_2817_fdr	32	37	42	40	24	48	39	35	40	42
ACTGATGTCGCCCAGA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCTATAGCTCTACGTG	ref_2817_fdr	76	99	97	68	66	71	74	59	89	76
CTTTCCGTTGCTCAGC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGTAGTCTGCGC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGGTGTTGGGAG	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTCGCTAGGCTTC	ref_2817_fdr	16	12	19	10	19	21	12	8	14	10
CTGAATCATCACTCTA	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTATTAGTCTTTCGCT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
AACTCACCATATGCCT	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTCACTTAGTTAA	ref_2817_fdr	14	10	11	7	8	13	14	8	4	8
ATCTCGGGGCCAGGCC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCGACAAGTTGGAATC	ref_2817_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGCTTATATGCCA	ref_2817_fdr	29	15	27	15	23	14	17	29	18	23
GACCGATGCATCGATT	ref_2817_fdr	90	61	112	100	87	80	69	90	95	75
CCCCGTGACCGAGATG	ref_2817_fdr	24	32	14	22	50	18	34	24	33	8
CATCGCCCATGAACAA	ref_2817_fdr	42	37	49	39	43	44	47	39	61	45
ATTCCGCAAGTTTCTG	ref_2817_fdr	30	21	29	24	18	17	18	20	23	26
TGTGTGCTGCTGGTTC	ref_2817_fdr	3	5	5	3	1	6	6	9	2	3
GTTCGTTTCACTTCTA	ref_2817_fdr	20	23	41	30	16	33	23	31	16	32
ACACTGGAGCAGTTGG	ref_2817_fdr	55	49	74	74	44	50	42	56	51	48
CTAGCAGAAGTTATTC	ref_2817_fdr	21	20	36	14	21	20	28	20	25	17
TACATGATAATCATCC	alt_2817_fdr	15	5	13	8	4	9	6	8	4	9
TCCTTTCGTGTGACTT	ref_2817_fdr	34	26	47	49	54	37	52	28	37	43
GTGCGCCCACCACCTT	alt_3878_RC	6	22	21	15	17	11	23	15	15	12
CTAACGGTGTGCTCAC	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GGTTGGGTTCTGTGAC	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
ACGATTCGGACCTAAG	alt_3878_RC	28	42	43	33	42	36	65	33	53	30
TTTTCATAGCCCTTCG	alt_3878_RC	18	36	44	36	52	31	30	20	47	22
CCTTGTACCGTCCCCG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TTAAAATATGTCAGTG	alt_3878_RC	8	13	15	4	10	3	12	8	10	7
CGGTTCACGGAACACT	alt_3878_RC	16	17	15	4	13	14	18	9	23	7
ATCATGTGAAGGGATC	alt_3878_RC	0	2	2	1	1	7	2	1	0	0
CGAACAGTACGGTATC	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GGATCCTCTAGTGCAT	alt_3878_RC	5	8	8	10	10	5	5	3	7	8
ATTGGTTAGCTCGTAT	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GCATTTTTGGCCGGGA	alt_3878_RC	8	17	19	14	22	12	29	17	14	14
ACGGTCATTTCTCGCG	alt_3878_RC	13	34	24	21	28	15	20	21	22	13
ACAATGGGACCACTTT	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GTATTTCATCTCTCTT	alt_3878_RC	0	0	2	4	4	0	2	0	2	1
AACCATAGTTCGTTGT	alt_3878_RC	18	24	9	13	26	6	29	10	25	13
TGTTTCTTTGTCTAGA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
CAGCGGGCACAGGGAT	alt_3878_RC	4	10	14	8	15	6	9	7	12	5
ATCCATATTCACTTTT	alt_3878_RC	34	30	31	38	54	40	29	24	54	27
CGGCTTATCAAGAGAC	alt_3878_RC	5	3	0	2	3	5	10	2	9	4
CATTCTGTGTTACTGA	alt_3878_RC	10	14	17	14	17	11	13	9	17	13
TTAACGTCCTTCAGAT	alt_3878_RC	7	8	11	9	9	4	9	5	7	8
ATAATCGTTTTTCCCG	alt_3878_RC	3	12	5	4	6	6	9	5	13	1
TCATTAGGAACCTATT	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
ATACGCTAGTGGTTGT	alt_3878_RC	9	9	14	13	16	12	10	9	23	3
TTAGTTTTATCAGTTG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
CGGACGAACATTTCGC	alt_3878_RC	36	56	42	30	38	27	42	33	53	29
GACTTTCTTTCTCCGA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
CATCCATTATCACTCT	alt_3878_RC	5	8	3	0	4	2	8	2	7	3
CCCCACGTATTCCTAT	alt_3878_RC	17	15	18	8	27	10	13	18	26	22
CAAACCCATGCCAAAG	alt_3878_RC	5	9	1	3	6	1	2	5	3	3
AAATGATATTATGCGT	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TTGTGCGCCCCAAGTA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TGTATAGTGAGCCATA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTGCGTAACTGA	alt_3878_RC	39	65	52	36	59	41	77	30	68	42
GACTCCCAAGAAGCGA	ref_3878_RC	24	16	18	11	15	19	20	7	17	20
AAATAAGGTGTAATTC	ref_3878_RC	26	14	19	12	20	10	10	11	18	9
GGTGCACGCCTCATTT	alt_3878_RC	1	0	1	0	0	1	0	0	0	0
TTTGTTTCGGTGTACA	alt_3878_RC	1	0	0	1	0	0	1	1	2	2
ATGGTCGCACTCCCCG	ref_3878_RC	1	24	2	0	25	0	33	2	38	3
CGATCAATGGTGACTG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GTTAGAACGCCTATTT	alt_3878_RC	15	15	9	6	10	14	14	9	7	15
CAGCTACTTCAGTTAT	alt_3878_RC	9	16	7	3	13	5	12	8	19	6
TAACCTCCGCGTGCGA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GTGATTCCCGTATCCA	alt_3878_RC	7	7	10	9	2	2	7	4	11	6
ATTCGCTACACCTCCA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
CAGGATGCGACCATTT	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GAACGATCTATGCCTC	alt_3878_RC	107	130	117	114	147	115	148	102	130	87
TAAATGTCTTAGGGTT	alt_3878_RC	8	15	11	15	10	10	20	11	7	5
TATTTAAGAATTCAGT	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
ATGCACACGTTCTGGG	alt_3878_RC	1	2	3	2	1	0	3	2	4	2
GTCCTCCTTACGCAGG	alt_3878_RC	23	36	22	17	22	25	38	12	40	26
ATCCTTTGGATCGTGC	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TCGGGATTATGCTCTG	alt_3878_RC	17	34	14	11	37	20	23	8	38	7
TACCAGCCAAACGGGA	alt_3878_RC	15	45	28	25	38	18	36	12	48	16
GACCTTAAGTTTAGGT	alt_3878_RC	13	16	8	9	20	7	13	7	17	8
GGGGCCTTATACGTGC	alt_3878_RC	20	17	17	16	20	18	30	12	29	20
GAATGGTAGTTATTTA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GAGAGCCGGATCAAGC	alt_3878_RC	14	15	14	19	26	10	15	13	15	9
TCAGGCTCATAGTTCT	alt_3878_RC	4	27	10	7	17	10	15	11	19	7
GGATAATCACAGTGGT	alt_3878_RC	11	14	13	8	17	10	14	8	17	7
AGGACCAGTTACTGGC	alt_3878_RC	12	10	10	4	12	11	21	7	17	7
ATTTTTCAAGTACTTC	alt_3878_RC	28	37	42	21	52	23	52	18	42	18
TCCCTGCTTAATCACG	alt_3878_RC	2	10	1	4	10	0	8	2	10	1
AAACCAACTTTCAACA	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
CAAATCTTACGGGATT	alt_3878_RC	7	5	7	6	4	3	3	9	4	2
TGGCGGAGGTTTTCAT	alt_3878_RC	4	3	2	4	8	7	6	4	3	2
TCTTTAGGTTTATCTC	alt_3878_RC	9	14	15	15	10	15	12	13	12	9
CATCACCTCTTCGCCT	alt_3878_RC	2	4	1	8	2	4	4	3	6	2
GTTCTTCTAGGAGGTG	alt_3878_RC	1	5	2	4	2	3	10	3	7	5
ATTGGCTTAGCCAGGT	alt_3878_RC	2	1	1	0	2	0	1	1	5	0
TTATCCACGGTGGTCT	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
GTCTGTACCCGTTTGG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TCTCAAGTGATATGAT	alt_3878_RC	15	28	21	9	13	11	26	12	33	16
TCGGACCTATTCTAGG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
AGTGGTATCGATAGCA	alt_3878_RC	3	8	14	6	11	10	12	7	13	6
TGTAGTATCAGTTGAG	alt_3878_RC	13	31	19	10	19	13	19	8	27	13
GAAGGCAGTCCGATGG	alt_3878_RC	5	7	6	1	4	3	6	3	8	2
TAAAGTGCTGTATATA	alt_3878_RC	12	19	7	17	15	16	9	8	30	3
TTTATTTCCGGTGCCG	alt_3878_RC	7	4	11	16	10	10	16	5	7	8
TTTTGAACTTGCTTTT	alt_3878_RC	48	60	79	76	54	46	48	46	62	43
CTGATTCTGACTGATC	alt_3878_RC	11	8	10	20	33	17	33	20	31	12
CGTAGGTCGTTTTCTA	alt_3878_RC	7	25	16	13	21	12	26	14	21	7
TCATCTCCAGAAATCT	alt_3878_RC	42	77	75	51	75	40	84	30	68	31
AAGATCGGGGAGTATC	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
ACCCCATGCGGCCTTA	alt_3878_RC	3	17	3	4	19	3	14	3	12	1
TTTGGGTCCTTGTTAT	alt_3878_RC	26	44	55	31	54	33	67	31	55	30
CTTTGTAGACTTTCCT	alt_3878_RC	16	18	12	8	15	15	15	14	17	7
TGTAAATTTTTTCTAA	alt_3878_RC	3	9	5	3	4	0	6	5	10	6
TAATTGGAGTTTCTAG	alt_3878_RC	15	33	11	20	33	28	26	22	35	26
CCATACTCTAACTACG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TTAAGCCCCGTCCAAG	alt_3878_RC	7	13	5	9	11	6	9	7	23	5
GTATGGTAGTTATTTA	alt_3878_RC	34	29	26	22	15	13	19	10	25	20
AAGGGCGTCCGGCTAG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
CTTAGTTCAATTCAAT	alt_3878_RC	11	24	10	8	19	8	20	7	32	10
AGTATGTTTAGAGCTT	alt_3878_RC	0	4	1	0	6	1	1	1	0	1
TGCTATCTTGAAGATG	alt_3878_RC	0	0	0	0	0	0	0	0	0	0
TATTTGTTGTCAAGCG	alt_3878_RC	20	28	20	15	27	22	35	23	24	15
ATCGCTTCTTACAGGT	alt_5316_upstream	51	83	56	52	94	52	98	55	96	67
TAGTTCGATCCGTTAC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
ATGGACGACGCTGTCT	alt_5316_upstream	18	10	12	9	18	5	18	10	17	12
GCAAAACTTGTTAGAC	alt_5316_upstream	68	121	105	93	158	65	164	74	150	82
CCAAGTTGGCTTCTCA	alt_5316_upstream	24	84	23	25	66	33	85	14	87	22
GCTATCTACTTTTAAT	ref_5316_upstream	43	72	73	38	52	58	66	41	85	42
TATCCGTTCGTCCGGT	alt_5316_upstream	2	7	0	1	2	0	3	1	2	0
ATATTGTTTAGGCAGT	alt_5316_upstream	56	95	56	53	80	34	62	51	78	54
TGTCGAATCGAGCCAT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGCTTTCGACGCT	alt_5316_upstream	41	77	49	20	67	38	73	44	69	41
TTATTCGTCCCCTTCG	alt_5316_upstream	11	14	11	10	10	13	14	16	19	8
CGGGCATGTAGTCCTA	alt_5316_upstream	33	45	30	29	56	25	39	22	50	22
GGCGCCCTCCCACATG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTTCGCATGTGG	alt_5316_upstream	65	85	84	69	90	62	82	61	104	58
GCAAGAATAAAATGCG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCGTAGCATTTTG	alt_5316_upstream	8	11	17	8	18	11	17	11	9	9
GCCCGCTAGCGCGACA	alt_5316_upstream	23	16	13	15	23	9	14	12	25	8
TTATCAGTGTCCGTGG	ref_5316_upstream	70	106	119	74	124	74	104	73	112	82
ATGTTTTTAGCATACC	alt_5316_upstream	35	62	53	41	58	44	73	32	55	29
GCGAAGGGATTGCTGT	alt_5316_upstream	7	15	8	10	9	9	14	11	15	5
GAGTTCGGTAGAAGCG	alt_5316_upstream	19	31	15	15	29	13	29	16	28	13
GCTCTGGTTATCATAC	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCAGGGGTCAACA	alt_5316_upstream	93	113	119	102	137	89	158	83	140	71
TCAGGTGCTGACCTAA	alt_5316_upstream	28	41	26	18	27	15	34	20	44	28
CTCTATGGCTAAATAG	alt_5316_upstream	28	46	39	36	52	30	59	16	53	21
TCAAGTTGGACTGGCA	alt_5316_upstream	0	5	4	5	2	4	1	1	3	1
GACGCAATCAGTTATT	alt_5316_upstream	35	62	32	29	82	47	66	31	72	43
TTTAACTGACGAGCTT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGTTGCGTACTA	alt_5316_upstream	77	131	87	71	152	61	135	59	135	59
CCCTTGATTCCGAGCA	ref_5316_upstream	57	73	57	45	67	38	84	50	80	42
GGCTATCGTAAACCTG	alt_5316_upstream	2	9	15	5	6	8	16	7	14	6
AGGCAGTGCCTCGGGG	alt_5316_upstream	57	74	44	37	78	54	73	43	93	39
CCTTACAACCGTGTCT	alt_5316_upstream	7	9	0	3	11	1	3	4	13	9
GTGTTTTTAGCTGGGC	alt_5316_upstream	25	38	40	26	69	31	53	30	67	29
ATGCCATTTATGGCCG	alt_5316_upstream	56	79	51	50	83	42	73	52	92	51
GCAAAATTATCTATAA	ref_5316_upstream	116	194	128	118	175	109	178	88	201	94
CGTCGTTTCCAGGTGA	alt_5316_upstream	18	29	14	15	39	11	18	13	34	15
CAGCCACATCCTAATC	alt_5316_upstream	10	23	5	2	23	10	21	6	18	6
TTGATAGCTATGATAC	alt_5316_upstream	22	41	50	41	59	24	54	28	59	31
GTCCACATCAGGTAGA	alt_5316_upstream	9	18	9	14	27	12	22	12	27	5
AGTGTCCTTTCAAGGG	alt_5316_upstream	10	27	22	17	18	18	18	13	23	2
AACACTAACAATCTGC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
GGCATTCAGGACTTCG	alt_5316_upstream	93	154	124	108	144	82	151	95	177	83
CATCCCTGTTGAATCG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAAGATTCGGGG	alt_5316_upstream	25	27	25	30	45	30	44	29	46	21
TTGGTTTTTCTACACC	alt_5316_upstream	34	63	38	34	58	43	67	31	55	31
TTGACTTATGCACTAT	alt_5316_upstream	4	21	3	12	22	6	19	8	14	8
GAGCTGCTGGGGGACA	alt_5316_upstream	10	21	9	14	13	8	28	12	17	7
GGGTCCTTTGCTGTTT	alt_5316_upstream	6	22	16	20	10	12	25	20	15	26
TCGGGCATGTCCCTGC	alt_5316_upstream	67	99	109	72	97	61	119	67	110	63
GGATTTTTGTCACACC	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGCCAGTGGCTGG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTAACGCTTAGGCGGG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCCGCCCGTTAAC	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTATTGTTAGCCT	alt_5316_upstream	34	56	43	30	83	46	67	34	79	39
TATTCTCTGCGCCTTC	alt_5316_upstream	19	46	36	29	44	25	50	25	42	27
AATGTTTTTACCGATT	alt_5316_upstream	10	36	14	8	30	9	27	7	20	14
TTATGTTTGATATCCT	alt_5316_upstream	17	45	28	18	37	27	35	23	21	26
TCACACCAACGGCTTG	alt_5316_upstream	17	27	21	21	28	13	44	20	30	14
ATTGGGTTATTCGCGA	alt_5316_upstream	13	26	19	14	36	18	28	16	19	11
AGTTGCGAGGGACGAA	alt_5316_upstream	11	15	13	7	15	8	11	10	13	6
AGATGAGATCTTAGAT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTCAGGCCTTCC	alt_5316_upstream	53	67	57	47	64	54	52	39	71	40
TTACAGTGCATAGTGT	alt_5316_upstream	5	8	5	5	14	5	16	5	9	1
TTGAGGCTACTCTTAG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCATTGGACCGCC	alt_5316_upstream	26	41	24	26	49	18	37	18	46	21
TGCTATCCTAGCATCG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CCCCTCGCTGGACTTC	alt_5316_upstream	26	41	47	27	46	37	43	38	23	19
CTCGTTTAGTCTACAA	alt_5316_upstream	6	4	6	3	11	8	14	1	5	4
GCGCACGTTATCTATG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTCGCTATTGTAA	alt_5316_upstream	21	37	25	22	66	20	74	16	66	16
CTCAAGGTTTCCGTTA	alt_5316_upstream	9	13	7	4	17	11	25	7	20	5
CTCACTTTACGAGCCT	alt_5316_upstream	65	130	106	63	118	70	114	62	111	59
GGCGACCTCCCACATG	alt_5316_upstream	137	181	181	167	184	147	154	117	206	132
CTAAGAACGTGCACAT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTTATCGTTTTATTTT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
GAGTAATGGAGTACCC	alt_5316_upstream	6	16	6	9	21	7	14	5	8	6
ACTATAATTTTGTTTC	alt_5316_upstream	16	23	29	20	37	13	26	22	28	13
GGACAAACCTAAAGGG	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
TCTCATCTCGAGGATT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
TTACGTCTGATCCCAT	alt_5316_upstream	25	36	34	21	33	14	30	24	46	21
TGAATAATTCGATTAA	alt_5316_upstream	16	19	14	12	11	8	15	8	16	16
AGTAACCCGCTTCCGA	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTTCAGGATCTCTTCT	alt_5316_upstream	84	125	89	95	100	77	114	73	115	62
GCTTATAGTAAATTCA	ref_5316_upstream	148	238	178	145	262	156	243	138	234	122
TGTAGTTGGTCAGCGT	alt_5316_upstream	50	86	73	63	85	60	107	53	93	52
GCATTAAGAACGAACC	alt_5316_upstream	1	0	0	0	1	1	1	0	1	0
GTGCTGGAATAACCGA	alt_5316_upstream	56	70	59	53	82	42	64	61	69	38
CGGCCTCACCGACACG	alt_5316_upstream	4	21	9	6	15	6	17	12	13	9
ACGTTATTTTGAAAGT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGAGTCGAATTGT	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
TTCTACCATTAAAAAT	ref_5316_upstream	0	4	3	2	3	2	0	2	6	1
CGACCGTGCGACTGTC	alt_5316_upstream	25	22	11	17	27	14	35	26	28	18
CCTTCCGCGGAACTTG	alt_5316_upstream	12	30	12	19	27	18	28	12	22	15
TCCACGCCGAGATCTA	alt_5316_upstream	2	13	2	4	11	3	6	4	22	4
CGTCGTCCTATCTTGG	alt_5316_upstream	10	10	6	11	17	12	18	5	25	9
GACGCACGTTAGGGAG	alt_5316_upstream	62	79	50	46	52	29	71	33	71	35
AGGTCCCTTTTTCGGC	alt_5316_upstream	13	17	19	17	28	11	26	14	21	14
TATCATACGTGCGAGA	alt_5316_upstream	0	0	0	0	0	0	0	0	0	0
AAAATACGTTAAATTT	alt_5316_upstream	21	17	18	25	23	20	22	24	24	17
TGGCCCACTGCAGTCC	alt_5316_upstream	3	12	12	6	6	3	5	4	7	6
CCGCATCGGGAAGCGA	alt_5316_upstream	9	24	6	11	14	25	23	15	20	12
GTTACCCTGATTGTCG	alt_5316_upstream	13	13	12	16	16	15	13	12	34	14
GGAACCCGTTTCTCGA	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
GAATCGTATCAAACTG	ref_854_reverse	11	6	11	8	19	7	18	10	19	13
TAGGTCCTAACAGATG	ref_854_reverse	67	105	111	91	100	81	115	89	112	73
TACGTATATGATGCGC	ref_854_reverse	21	22	25	33	23	15	30	14	45	15
TATCTGTTATATTGAT	ref_854_reverse	26	30	34	27	50	28	32	15	22	21
GTAGCTCTAAAGGTTC	ref_854_reverse	44	58	37	44	51	51	70	45	58	39
TATAGTTACAATTTTT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTCGCGTATATAC	ref_854_reverse	11	24	10	18	21	7	31	19	35	9
GAGATGGGTCTTGTAC	ref_854_reverse	39	67	51	37	72	39	67	34	72	53
ACTCCCCCCTCAAGGA	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TGACTTATGCCCGCTG	ref_854_reverse	21	31	35	22	32	27	33	17	37	24
AGAACCTCCAATGGAT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TACTATGTAGCGGAAG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TCGTAAGAATACTAAT	ref_854_reverse	15	7	14	11	17	7	21	4	17	16
GATACGACTTCTGTAC	ref_854_reverse	41	69	57	45	65	38	69	38	75	42
TTCAACGGTTGAGATA	ref_854_reverse	15	21	3	7	16	7	25	6	13	12
AATATCGCAGCCCACG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCCACCCTGGGG	ref_854_reverse	13	17	10	7	22	7	25	19	21	7
AATGTGGGAGGCGCTC	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCAACGACACTG	ref_854_reverse	9	8	10	6	1	4	7	7	5	3
GGTTTTGGTTCATTCG	ref_854_reverse	33	46	37	34	61	23	61	32	65	39
AGGATCGTTCTGGTGG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
GGATATACGGTATGGA	ref_854_reverse	6	19	11	18	12	12	13	18	18	5
GATCTGGTTACACTTC	ref_854_reverse	17	20	15	14	22	8	23	17	14	23
GCTGGCTTGTTATAGA	ref_854_reverse	5	16	9	10	14	7	10	9	11	11
GACATCGAGTATTTAG	ref_854_reverse	6	19	2	4	16	9	17	5	11	1
TACCCGCTTAGGTTTA	ref_854_reverse	18	28	23	14	22	10	43	17	33	17
GTCTGCCGCCACTGTC	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCCTTGATCTATC	ref_854_reverse	30	19	23	14	28	21	40	20	42	17
AGGATCGTTTGGCTCT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCGCTGCGCTTTC	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGTTTTAACTTCC	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TCTAAAGCGTAGCTTG	ref_854_reverse	7	14	8	4	11	9	19	9	10	11
TGCTTATTTGTCCCGT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTAGGTCGTCAGA	ref_854_reverse	18	14	21	17	21	14	15	10	22	12
GGAACTTGGGGCCCGT	ref_854_reverse	2	2	5	1	2	2	2	7	1	1
TGTAATCAATATATCC	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TACGACCTACCGCTCC	ref_854_reverse	48	96	54	52	86	29	77	37	118	39
AGCTTTCTTCTAGATG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCTTATTACAGCC	ref_854_reverse	25	55	39	30	54	42	52	20	66	27
GTCAGACCAGGGTATC	alt_854_reverse	248	434	286	251	465	228	445	239	449	208
GGCACATAGTTGATGA	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TCGGACCACGCATAAC	ref_854_reverse	8	28	7	5	24	3	23	7	20	9
TTTCCCGTTTTTTTTG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
ACGATCCCAGGGTGTT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATGCCGTTGGAC	ref_854_reverse	1	5	0	2	1	2	2	2	1	1
GGAACTGTATGATTTG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CGTAGAGTAGAACCGT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCATGAAACTAAT	ref_854_reverse	7	17	11	7	17	7	15	9	19	6
GGACTGTGTGCCTGAA	ref_854_reverse	19	19	24	15	24	15	19	20	24	15
CCGACGGTGGCACGAT	ref_854_reverse	18	127	37	29	150	33	134	35	181	29
TACAGGACTTCACGGT	ref_854_reverse	31	43	45	43	53	31	44	25	44	26
GATCTCTAGTTCTTTC	ref_854_reverse	33	67	48	45	66	42	79	33	60	36
TCAATTCCGCTTGTAG	ref_854_reverse	33	53	45	19	52	29	46	17	59	29
TACAGGTTCCGCATTA	ref_854_reverse	3	4	3	2	3	2	0	2	8	1
GTTCGATTCTTCGCAT	ref_854_reverse	4	1	5	1	5	0	6	2	2	1
GATCGCCCGATTCGTA	ref_854_reverse	195	228	200	192	247	154	260	138	247	156
GCGCAGACCTCGAAGA	ref_854_reverse	5	2	5	5	10	4	10	8	6	5
CGCCTCTTCGGTCCAA	ref_854_reverse	14	15	22	9	28	21	12	12	14	13
CCATAGCGTGTCCTGA	ref_854_reverse	0	0	0	0	0	0	0	0	0	1
CCATGCATTATGCCGC	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTAGGAACCTCAG	ref_854_reverse	28	44	24	40	63	24	48	29	47	17
GTATGTCGCGGGCCGT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CATTACATGATGCCAG	ref_854_reverse	1	0	1	0	2	0	4	0	2	1
TTCCTGATGTACATCT	ref_854_reverse	17	26	19	24	24	7	31	13	40	15
GAGGACAATTTTTCTC	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGACCAATTGTAC	ref_854_reverse	21	138	33	37	132	29	148	23	155	21
TCGTCGTCCTGCCCGT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCCCTGATGTAAG	ref_854_reverse	10	37	21	18	23	15	43	13	23	13
CCAGGTTTCTTACCAA	ref_854_reverse	19	41	17	9	34	12	32	22	28	11
CTCTCAAGAGCTTAGA	alt_854_reverse	202	372	268	232	396	216	343	205	388	220
CCGCTGATGAGACTTA	ref_854_reverse	2	4	6	1	5	8	3	3	8	3
ACATTTCAACGCGGAC	ref_854_reverse	11	7	8	7	12	5	11	5	9	6
GTCAAGGTTGCACAGT	ref_854_reverse	21	19	14	10	33	18	28	14	24	14
CATGGGTGGCCCGCTA	ref_854_reverse	30	33	33	41	30	16	46	23	49	32
CTACAAACGATGCCTG	alt_854_reverse	11	20	11	8	23	5	24	14	27	11
TGAGGAATGTCGGTCT	ref_854_reverse	12	10	2	8	6	5	8	4	8	5
CGTTTGCCTAATGTTT	ref_854_reverse	103	217	103	94	206	80	194	108	214	105
AGACCGCACGATGGAG	ref_854_reverse	90	152	121	116	169	111	140	94	163	75
CAAGGTTCGGTAGCAT	ref_854_reverse	32	40	39	31	41	16	46	37	48	17
ACAAATTTGTCTAGAA	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
AGGACGGTAAGAAATA	ref_854_reverse	5	3	0	2	2	1	2	1	3	5
ATCATCAGGCTCCACG	ref_854_reverse	30	46	37	35	25	38	46	40	41	21
GCTACGGAACCGGTCA	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCTATATTACGGT	ref_854_reverse	7	13	11	9	12	11	11	13	16	5
AACCCATATGCAACAC	ref_854_reverse	8	3	5	9	10	8	6	4	15	5
CGATATCGGATTTTGA	ref_854_reverse	2	2	2	1	4	0	5	1	5	1
GATGTGGTCTGTGGTT	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CCTACTTGTCTGGAGT	ref_854_reverse	176	312	225	177	278	182	343	153	319	159
TTTATTCCGAACTATT	ref_854_reverse	5	12	8	2	13	8	5	6	4	2
TTCCCGGCGCCCGTTG	ref_854_reverse	9	18	23	14	34	21	27	9	33	16
TTCCCCGCTTAATCGA	alt_854_reverse	4	10	3	0	17	4	10	4	14	2
CGTTCGTCGTGATGCG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
CATCATCCTATGAGTG	ref_854_reverse	22	48	62	37	50	35	59	36	52	35
TTGCTTTGTATCGGGG	ref_854_reverse	8	17	18	5	26	14	15	7	17	6
CTGGGGTTCTTAGAGA	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGCTATGGAATTC	ref_854_reverse	1	2	2	3	1	0	3	4	4	0
TATGTGGGAGGCGCTC	ref_854_reverse	57	56	58	63	75	41	89	46	101	44
TACAAATTCATGCTGG	ref_854_reverse	22	53	16	24	46	21	42	19	34	18
TATTCGTGACCGCGCC	ref_854_reverse	30	42	33	19	43	19	52	17	46	27
AGTCTTCAATTAATTT	ref_854_reverse	10	16	13	11	17	10	7	7	14	7
CCGCTCCCGGGGGGTG	ref_854_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGCACTGTATCGA	ref_854_reverse	30	59	32	32	69	32	47	35	56	40
AACTTGGGGCCGGTGT	ref_854_reverse	19	27	24	19	26	25	40	17	44	16
GTCTCGTTGTCTTTGC	ref_854_reverse	35	63	38	39	57	59	82	34	84	39
AATGTATCTAGCAGCG	ref_854_reverse	8	21	8	6	30	8	19	12	13	8
CTGCGTTCGTCGTGGT	ref_854_reverse	24	35	38	26	49	31	51	29	41	23
CTGGGTCGAGGCCATA	ref_854_reverse	11	14	9	5	10	4	20	6	19	11
AGTTGTTTGGGTATGT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTGCTTCGCTCTG	alt_2605_reverse	5	5	8	4	6	3	10	5	8	4
ACGCTGTTTCCGGAGT	alt_2605_reverse	36	30	48	43	50	39	42	38	48	38
TTGAATTGTGAACTTT	alt_2605_reverse	21	27	27	31	31	16	19	19	31	15
TGCGAACTTGTGGGAC	alt_2605_reverse	9	9	7	11	4	6	6	9	9	7
CAGGTTTCGACCAGGG	alt_2605_reverse	33	35	32	42	37	50	42	48	34	33
TCGCATGCTATCCCAG	alt_2605_reverse	24	39	29	19	39	20	41	20	38	19
CCGAAGTAATTGTATA	alt_2605_reverse	17	15	13	16	18	14	17	11	19	20
ATCGACACCCAGCATT	alt_2605_reverse	163	177	179	128	164	140	166	148	141	143
GCAGACTGGAACTCTG	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
ACACGGCTGTCTACAG	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTCCTTGTCCACT	alt_2605_reverse	21	19	21	25	13	13	20	16	19	12
GAAGCCGACCAGTAAT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
GGGATTGGGTCGGATA	alt_2605_reverse	11	11	14	5	5	15	19	5	18	4
ACATTAATAGTGATAG	alt_2605_reverse	21	36	26	25	18	14	29	19	25	17
TGACTTACTGGCACTA	alt_2605_reverse	0	1	0	2	0	1	1	0	3	2
GCAAGTCCATGTCGGC	alt_2605_reverse	51	37	62	57	54	60	37	32	56	54
CGTGTAGCACTGACGA	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTCTTAAAGACTA	alt_2605_reverse	41	62	40	44	46	59	48	51	60	44
CCCTTGGTAAGTCACT	alt_2605_reverse	40	46	31	28	44	26	62	32	64	16
TGGTTCTTATTATCCA	alt_2605_reverse	63	71	87	73	95	67	78	78	69	68
CGGCCGCCTCCCGTGG	alt_2605_reverse	108	153	132	109	160	83	144	110	161	84
TCTCTTCTGGGTCGCT	alt_2605_reverse	8	29	23	7	29	8	27	8	25	5
ATCCGTTCAACTTAAT	alt_2605_reverse	18	17	20	16	19	13	23	12	25	7
TTCTTTCTTGAGCTCA	alt_2605_reverse	46	59	49	75	79	56	94	54	93	54
TTCTCTGACGTGACCC	alt_2605_reverse	138	158	168	172	162	161	170	137	167	118
CGAGTTTCTGGTTCTT	alt_2605_reverse	15	21	25	13	17	20	28	12	11	16
ATCAAGCTGATGGTCT	alt_2605_reverse	22	10	17	14	23	20	13	17	20	10
CAATCATCCGAGGACA	alt_2605_reverse	17	16	28	17	13	17	26	19	34	21
TTTACTGGTTGCTCGG	alt_2605_reverse	13	19	15	13	15	18	14	11	22	23
GAACGATCATCCGACT	alt_2605_reverse	17	24	20	16	11	20	11	14	17	21
TAGGCCGCCTGGACTC	alt_2605_reverse	15	31	24	12	29	7	24	8	29	8
CTGGCTTTGCTCGCAT	alt_2605_reverse	11	11	10	16	14	7	15	5	19	8
GAAGGCACATGCGCTT	alt_2605_reverse	31	39	40	27	37	21	32	29	27	21
ATCTAGGAGGCGTATT	alt_2605_reverse	30	29	39	31	43	36	35	34	29	18
ACTCATAGACCAAGAT	alt_2605_reverse	62	75	72	66	83	73	83	62	83	65
AGGATCGCAACCTCCT	alt_2605_reverse	7	15	3	9	7	4	9	6	13	7
CTTACGTAGCCGTTCG	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
GTACCTGCCCTTGTGT	alt_2605_reverse	18	19	36	20	23	19	26	17	27	27
CGTTTATTCATGGTAT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTCACAGTCTTCA	alt_2605_reverse	19	23	25	18	31	21	49	16	26	22
CTCTTGTCAAGGTTTA	alt_2605_reverse	12	27	9	15	27	3	26	9	48	5
TCCAAGTGTCTTAGAA	alt_2605_reverse	4	0	1	5	4	3	6	2	5	4
TGTACGTCTTGTTTGC	alt_2605_reverse	33	17	37	18	25	24	16	13	29	28
CGGAATTATCTTGCGC	alt_2605_reverse	14	18	20	15	28	19	25	13	21	17
TGTTGTCCGGTTATTG	alt_2605_reverse	47	40	51	28	43	49	46	41	41	39
GCTTACTCCGTACTAT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTCGGCGTTCTCA	alt_2605_reverse	20	29	33	35	25	26	34	23	31	19
TGTTGAAAATGAGGCC	alt_2605_reverse	18	14	34	25	17	22	17	15	14	30
CATTTGCTCCTAGTGT	alt_2605_reverse	0	1	1	0	0	0	2	0	0	0
CGGCCCGCGCTTTGGG	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGTTTTTGGTTCC	alt_2605_reverse	95	111	116	87	117	84	98	68	103	93
AGGTTTTTCCCGTCGG	alt_2605_reverse	6	16	3	11	14	4	9	5	10	10
GGCTCATCTGTACGTA	alt_2605_reverse	163	177	168	180	180	169	201	166	169	167
CATTGCCCCTCTTCCA	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
GTACGTGACGGATACT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CGGTATAGATTCCCTG	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CGATCAGTCCGCGTAC	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CTAAGTGTTCATTAAA	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCGCCGATTTTCA	alt_2605_reverse	47	32	58	34	47	46	48	30	61	41
CAGGTATGCTACGTAG	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAGCACCACTGTC	alt_2605_reverse	8	14	13	10	9	8	10	12	13	7
GTTTATGTCTCCCCTT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCGTGCTGAACCA	alt_2605_reverse	44	34	49	35	29	44	45	38	44	29
CGGAGCGCAGCAGCAC	alt_2605_reverse	47	41	74	54	34	44	44	60	67	44
GTCTAGTGGGGCAGCC	alt_2605_reverse	16	24	14	21	17	9	19	18	19	8
GGCTTAGCTGCTAGTC	alt_2605_reverse	39	70	50	56	55	44	69	62	64	48
ATGCCACGGCTCCCTT	alt_2605_reverse	28	31	43	26	40	34	43	24	33	34
TGACGGAATGATATGC	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGGACCCTGCAAT	alt_2605_reverse	0	0	0	0	1	0	1	1	1	4
CCTTGCCGGACACTGT	alt_2605_reverse	65	124	128	109	90	81	103	75	116	77
CTGACTGGCAGTAGAC	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
GCTTAGTTCATCAGGT	alt_2605_reverse	10	17	13	8	29	12	20	12	12	11
CTTGCCTCGTACCAAT	alt_2605_reverse	2	1	4	2	3	3	5	0	5	1
CCCTACTCTGGTCTCG	alt_2605_reverse	29	42	47	37	63	33	53	35	50	30
CAATCCTCGAATTTAT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTGAGCCGCTTTT	alt_2605_reverse	24	44	22	22	51	27	43	24	36	19
CGACACCCAAGGACCC	alt_2605_reverse	21	21	21	22	14	28	36	27	26	17
CTCTAAGTATAAGGCC	alt_2605_reverse	16	13	16	13	12	11	13	15	19	12
CGCAATCTCCACGTTT	alt_2605_reverse	18	8	13	16	14	11	21	11	19	15
TCATACCTCGATGTTC	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
CCCCAATTCTCGGTCC	alt_2605_reverse	67	94	84	59	64	67	70	55	66	61
TCGATGAGGCATTAAC	alt_2605_reverse	46	49	49	48	39	28	49	48	43	46
TAATTGCTCCGTTTTC	alt_2605_reverse	35	24	28	23	29	26	28	8	31	16
CCTAGGGTTTACGTGT	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCTCGATAGGCAC	alt_2605_reverse	41	58	51	27	66	28	65	27	53	33
CATAGGATGGGGCTGT	alt_2605_reverse	21	16	22	23	26	16	16	20	16	17
CGACCGTCGGATCAAG	alt_2605_reverse	0	0	0	0	0	0	0	0	0	0
ATATAACACCTTATGA	alt_2605_reverse	36	53	54	43	49	53	57	45	57	45
CTAAGGGATGGGTTCT	alt_2605_reverse	63	35	55	48	46	60	42	33	48	42
GGGCTTATTTAATGGG	alt_2605_reverse	35	24	40	18	36	31	26	33	34	30
GGATGCGTAACCCTTT	alt_2605_reverse	28	35	31	17	37	26	40	21	28	26
TAACCGTTTTCGCTAC	alt_2605_reverse	38	31	36	27	29	29	30	17	29	22
TTGCAGATATCTTTCG	alt_2605_reverse	47	40	44	37	46	41	40	44	48	41
GGACTCATGGCCCAGC	alt_2605_reverse	72	56	86	65	67	62	69	71	67	62
AAGTCTCTCCAGTCCC	alt_2605_reverse	2	3	0	3	4	2	1	0	1	2
TACGTACCCTAGCCGC	alt_2605_reverse	29	26	37	40	37	17	37	24	31	23
CGACTTTTTCTCGTGC	alt_2605_reverse	15	14	19	18	17	11	21	22	15	12
TCGTTCTGGGTTGGCA	alt_2605_reverse	7	3	5	8	3	5	10	7	7	4
TGCGAGTAGGTATGGT	alt_1402_reverse	48	34	66	49	50	52	36	38	30	49
TCTCGCGCCATCGACA	alt_1402_reverse	6	19	22	11	22	7	24	9	26	8
CAGCATTTTGGCCTCG	alt_1402_reverse	99	91	112	116	78	92	100	98	99	80
TCCTGATTTGGGGTGC	alt_1402_reverse	14	14	20	15	8	8	17	10	15	8
TTTCCCCCGATTGTTC	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCCAACTTTCTGT	alt_1402_reverse	35	29	45	37	21	24	25	27	29	34
GCCGATGTACGTGGGT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTACCTATGGGCT	alt_1402_reverse	97	89	115	104	101	91	76	93	92	75
TGCTATTTTACGCCAC	alt_1402_reverse	23	9	26	22	21	22	19	19	10	17
TCATATTACGTTAAAG	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACAAGAGTCGGAGTGG	alt_1402_reverse	51	30	65	59	50	53	62	50	64	52
AAATCAGACCCCGGCC	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TATACGTCCTTGAAAA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
CTAAACATAAGAATTT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTATCTTCGTAGA	alt_1402_reverse	1	0	4	2	0	1	4	4	2	5
CCGTTATTGTAACCCT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ATTTACCTATTCACAC	alt_1402_reverse	4	5	9	10	1	7	9	2	7	10
GTATGTCACTTTTGTT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTAAAGAGCCATG	alt_1402_reverse	17	9	18	9	8	6	10	18	10	11
GAAGCGTTGGGTTTCA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACGCGCCAATGCAGCA	alt_1402_reverse	52	50	68	58	36	56	40	52	44	50
CGTGACGCTCAGAAAG	alt_1402_reverse	79	65	119	90	96	68	74	80	71	63
AAATGCGCCGCTCCCT	ref_1402_reverse	49	29	60	53	44	45	47	45	38	40
CCTCGGCACGCTTGTT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GATGTTTTGTCCTCAG	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTCTAGTCCGTGGGCC	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATTTCGTCCACA	alt_1402_reverse	33	25	44	42	27	35	22	32	17	31
TATGTTGCTATCCCCC	alt_1402_reverse	10	14	20	15	10	9	7	16	6	7
GGCCGGGCTCGGCCAA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGAGTACGTCACC	alt_1402_reverse	14	27	18	18	24	21	27	21	33	27
TCGCAAATCGAGGATA	alt_1402_reverse	16	8	25	16	21	18	11	14	17	21
TATTTCTTTTATCGCA	alt_1402_reverse	14	11	24	15	13	13	11	19	16	12
TCGGGACGCATGGCCT	alt_1402_reverse	124	64	158	125	56	131	76	114	65	129
ACTCTTCGGTATTGCT	alt_1402_reverse	3	2	4	2	2	0	2	6	2	3
AGTGAAATCCTAGCCA	alt_1402_reverse	3	3	15	2	4	7	1	7	4	7
AGTTAATCTCGCTTGT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
CATTAAAAGTTCTTTG	alt_1402_reverse	10	8	7	10	4	12	8	12	5	13
TACCGCAGACTGGTTC	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCGGGTCTTTGAC	alt_1402_reverse	10	20	14	22	33	12	17	5	29	3
GTTAGGTATCGGATGG	alt_1402_reverse	30	23	37	21	19	25	26	18	18	9
CAGATAGCACCTATTT	alt_1402_reverse	265	212	281	246	196	249	202	250	232	226
TGGATGCAACTCAGTC	alt_1402_reverse	1	4	5	1	3	7	3	3	3	3
GTCATTGGCCGGGCTA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTACCTTTACTCAGAT	alt_1402_reverse	49	38	51	43	25	46	46	32	37	48
CTAGTCGCACCACACT	alt_1402_reverse	13	18	21	17	19	13	20	14	24	26
AAGGCTGGCTCAGGTT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GGTAAGTTTCAGTTGT	alt_1402_reverse	24	16	38	24	16	34	21	17	14	17
GTGCAGCTCAGGACCT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GACGACGCGCGGTAGA	alt_1402_reverse	110	86	143	84	87	114	87	104	114	90
TGTTCTCCTGAAATAA	alt_1402_reverse	3	4	6	7	5	8	3	4	8	8
ATGGGCTACTTACTCG	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGCCCATTTAGCC	alt_1402_reverse	45	21	55	43	30	42	23	32	19	37
CCGAACCTGGTCAATT	alt_1402_reverse	32	32	62	57	45	47	39	37	38	35
CCTATTATGACGAGGT	alt_1402_reverse	25	11	27	17	13	21	12	24	11	15
AAGGTTGGGCAGCCGA	alt_1402_reverse	14	8	14	11	12	18	10	8	11	14
CACGCTCAGGATCTGG	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTCGTGAGGCCCC	alt_1402_reverse	67	67	93	89	67	83	55	62	77	84
GAGAATTCGGCTGTAT	alt_1402_reverse	38	21	30	36	25	29	29	32	15	28
ATAGCTCGTCCAAGTC	alt_1402_reverse	21	29	28	15	18	34	30	19	24	20
CGTGTTATTGCGCTCT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTCAATCGGGAAT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TCTATATAAGCGAATT	alt_1402_reverse	103	73	121	93	80	88	62	90	77	68
GAGGATTACCTTTTCG	alt_1402_reverse	26	21	20	13	15	16	19	16	17	26
ATATTCATGAATCACA	alt_1402_reverse	12	7	10	7	8	15	7	3	4	6
GCGGGTAACATGATCG	alt_1402_reverse	21	17	27	20	20	14	18	23	17	11
ACTATTTGACCGTGAT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGACTTTCGTCGA	alt_1402_reverse	46	22	54	40	28	36	29	46	30	31
CGTGAACGCTATACCA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGCCAGTCCTTTA	alt_1402_reverse	15	15	22	22	16	14	16	28	14	15
CAAATAGCCCAGCGGT	alt_1402_reverse	36	34	40	37	34	43	36	21	26	38
TAACCACTCATGACTG	alt_1402_reverse	16	15	23	30	19	23	29	20	26	13
GCCTGCTACAAAACCC	alt_1402_reverse	19	43	46	40	54	36	50	44	25	32
GTTGCAAAAGAGATTC	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGTGATCCCGGA	alt_1402_reverse	66	40	70	69	40	76	51	55	27	59
CGCGGCCTAATGATTT	alt_1402_reverse	15	12	10	11	11	11	14	16	15	3
TTGCCACCTAGGAAAG	alt_1402_reverse	14	15	31	15	35	20	26	17	19	18
TTAGTGCATCTGGCCG	alt_1402_reverse	136	89	130	124	87	108	84	105	89	98
TTTCGGTTTATCGACC	alt_1402_reverse	12	17	17	19	13	11	11	14	11	16
AGTTCACATGTTCCGT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAAATGTTTCCAT	alt_1402_reverse	223	175	288	215	138	247	154	200	194	237
GTTACCACCTCCAAAC	alt_1402_reverse	35	16	31	28	19	29	23	16	31	29
GACGCCGCGCGGTAGA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGACAGGCCCGAA	alt_1402_reverse	10	8	14	10	6	4	10	10	4	5
CAAACTCCCATGTTCC	alt_1402_reverse	55	46	67	50	37	44	43	52	41	45
GAGATTTGACAACGGA	alt_1402_reverse	37	25	35	40	24	41	29	39	28	41
GGGTCACTTTTTACAC	alt_1402_reverse	19	21	53	37	25	22	23	27	28	33
GCGGTATTATTCACCG	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGTTTTAAAGATC	alt_1402_reverse	28	22	17	21	15	29	12	21	12	14
TATGGGGAGGTTTTAC	alt_1402_reverse	40	31	29	36	27	28	21	32	21	27
AAAGTTGTAAATCGGC	alt_1402_reverse	22	11	26	20	10	34	14	14	28	19
GTAATTATGTCCATTA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGTCAATTCAACT	alt_1402_reverse	30	30	58	32	41	39	38	40	49	52
TTATACGACCTCGTAC	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACAAATGTCTCGGTTT	alt_1402_reverse	45	35	56	51	27	54	44	46	39	48
GGTGCGCTCAGTATTA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
TGATACGTCCGGACGA	alt_1402_reverse	26	14	28	18	24	15	20	23	15	30
CATACGGTAATCAAGG	alt_1402_reverse	234	109	243	242	171	178	109	201	147	176
TTGAGTTACACCAGGT	alt_1402_reverse	79	71	87	70	70	89	80	71	73	58
CAGCGGTCTCTTCTCC	alt_1402_reverse	44	29	38	36	35	45	53	32	39	35
TGAAAAGCACTCACTG	alt_1402_reverse	48	44	87	61	48	46	52	53	44	56
CAAAGGGTGAGTGTTC	alt_1402_reverse	176	145	215	206	116	164	148	163	171	140
TTTGAACAAGGATCCG	alt_1402_reverse	24	10	17	10	7	14	12	8	14	17
TTCCGTTTTCACTTTC	alt_1402_reverse	476	203	566	470	245	441	282	457	300	434
ACACTTCCTGCTTCCA	alt_1402_reverse	2	3	5	2	6	5	6	1	3	1
GGACTCAACCTTCTGG	alt_1402_reverse	17	13	25	18	9	13	9	12	10	17
TACGTCTTTCCTGGCT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ATATCTACTGCCTTTT	alt_1402_reverse	57	43	75	70	32	56	42	74	43	51
CTTCTTAAGCTCTGAG	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GATCGGGTCAATATCG	alt_1402_reverse	37	35	48	43	40	48	44	43	37	39
GGGGAGTCTAACGGCG	alt_1402_reverse	114	67	121	90	58	106	67	110	56	96
ACACAATCGCATGATG	alt_1402_reverse	21	31	36	37	23	28	34	18	40	28
TTCTCATTTGGCTGGT	alt_1402_reverse	180	109	186	153	128	158	119	149	129	163
CTGTCGGCACTTATTC	alt_1402_reverse	63	54	107	70	45	62	48	58	59	47
CCCAAGTCCAACTCCG	alt_1402_reverse	41	33	73	62	39	55	45	55	40	39
GTGCTGCTAGTCCTCA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
CCGGCGGGGGGTCGTT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGATACGTCACTG	alt_1402_reverse	24	44	73	52	33	58	45	48	40	47
TATTGTCCCTTTTGAC	alt_1402_reverse	95	67	120	91	71	102	72	95	88	88
ATAACGTTCGCGCTTC	alt_1402_reverse	16	7	8	12	8	10	12	13	11	13
ATGGGTGTGTGTGAGG	alt_1402_reverse	16	11	40	28	19	25	26	18	21	24
TGCAAGGTCAGAACGA	alt_1402_reverse	18	9	4	5	5	14	2	7	11	6
ATAGTCGCTGTCCTTT	alt_1402_reverse	5	14	20	9	9	11	9	5	9	6
ACTGGTCTACTGTCCG	alt_1402_reverse	77	59	82	76	53	48	51	67	71	71
GCGGTTGCTCTTCCAA	alt_1402_reverse	24	17	36	31	18	22	18	25	19	33
GAGCCGCAATCGATAG	alt_1402_reverse	26	30	50	36	32	37	25	35	40	46
GTTCCTAGGAGCCATT	alt_1402_reverse	26	22	34	28	6	27	23	33	21	28
GTGGGCTGCTATTTGT	alt_1402_reverse	89	57	80	97	61	76	59	82	60	64
TCTGCTGAGGTAGCTT	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTACAGTCGCTCT	alt_1402_reverse	73	71	101	86	77	85	77	75	74	82
CACTATTTCTAGAACA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTGGTTGATCGCA	alt_1402_reverse	35	24	55	39	27	37	37	34	40	29
GGCTATTTCGGATCCG	alt_1402_reverse	57	31	47	50	30	45	35	33	47	41
CAGCTCGACAGTGTTA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
AGAGCCACATTCGCGG	alt_1402_reverse	20	9	12	10	10	5	12	14	8	11
CCCTCCTGGAAGCGAA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
CTTACTGGGCATCGGG	alt_1402_reverse	10	1	6	11	5	4	6	7	3	6
CCGACCATTGTCAGGG	alt_1402_reverse	51	58	53	55	46	51	45	60	68	48
GCGCCCCCATGAGTCA	alt_1402_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTGTCCGTCTACT	alt_4645_RC	5	6	8	3	5	4	4	8	0	4
GACCGTAGCCCTTATA	alt_4645_RC	249	191	309	288	208	237	191	264	217	241
CAACACACCGTGGATT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CTTGTGAGATCCTTGC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CGGGCAAGTCCCGACT	alt_4645_RC	32	18	29	22	17	19	25	24	15	22
CGTGCCTTTTATGACG	alt_4645_RC	10	9	12	14	5	9	12	5	12	19
GCGACGAAATAGAATT	alt_4645_RC	44	22	31	26	22	41	27	42	24	24
GGCACGTCCAATTGGC	alt_4645_RC	12	5	13	8	4	6	3	3	5	12
TCGATAGAAGTCTGCG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
AACAATAGCGCTGAGA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GCCCGTAGCCCTTATA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GTTATTACCTATGTGG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CTTAATACTCGACGGT	alt_4645_RC	169	182	203	188	172	155	176	155	146	145
TAATGGTTATTTCGGA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CTTAGTTATATATGTT	alt_4645_RC	152	175	186	179	144	152	173	155	173	128
GATTCTAGATAGGGTA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CGCATCCAATTCCCAA	alt_4645_RC	16	11	17	9	11	10	10	3	12	7
GCTCTTCTATGCCGCA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TTCCTTATTCGCGCGG	alt_4645_RC	40	51	89	71	32	72	53	57	55	54
CGCACTGCGTATGGCT	alt_4645_RC	11	19	19	12	11	18	11	12	17	14
GAATTCGGAACCTGTG	alt_4645_RC	23	25	39	21	17	18	26	17	37	15
ATGAACGTTCGGCTAG	alt_4645_RC	18	16	16	13	18	20	13	17	20	17
GTTTGGGCTTTAGGTT	alt_4645_RC	56	33	58	53	32	57	36	45	38	61
GTGTAAAAATTCGTAT	alt_4645_RC	24	12	32	23	25	18	21	21	14	17
CCCATTGTCGTTCCGT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
ACGTATGAACGCAGAT	alt_4645_RC	47	52	63	72	44	47	51	40	53	50
TGGTTGTGACAACCAT	alt_4645_RC	13	9	9	19	12	24	13	13	9	22
ATCATACCCCGATCGC	alt_4645_RC	0	6	3	1	4	2	6	2	14	2
TGTGAGCCTCTAGCAT	alt_4645_RC	27	33	39	32	17	27	21	22	25	28
CTTGGGTTAACTTGAC	alt_4645_RC	33	26	50	32	32	29	29	34	34	35
TTGTACGTTTCATTAT	alt_4645_RC	23	15	11	26	11	16	14	15	8	16
TTGTTCCCATGTCGCC	alt_4645_RC	37	17	33	27	15	30	18	27	17	23
TCACCCCTGTGTGAGA	alt_4645_RC	1	1	0	1	1	0	0	0	1	1
AGTTTTGATTTGGCAC	alt_4645_RC	32	36	59	36	32	42	61	53	31	35
CAGTTTTGTAGCTATT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CCTCCTCGAGATTCTG	alt_4645_RC	8	12	11	13	6	5	6	20	7	6
TTACGCAGAATCTATT	alt_4645_RC	7	10	10	5	4	11	6	10	5	6
GAAAAGAACACTTGGT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GACCTTCTAATCTACG	alt_4645_RC	132	82	135	118	84	94	76	122	90	116
TGGTAACGTAGGTGCA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CGTGCCCGGTTACCAT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
ATTGTTCGGCACGGGC	alt_4645_RC	0	1	0	1	0	1	0	2	0	1
TGTTCTAATTGGGCAG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
AAGGATAGCACAGCAC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
AAGGTACCATTTTAGC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CAAAGTGTCTGTCCGG	alt_4645_RC	17	22	27	22	21	26	16	15	15	31
TTTAAGATTTACATTT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
ACGCCCCCAACTCTAC	alt_4645_RC	0	5	7	3	2	1	5	3	6	5
GAATAATTTGGTTTAA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GGCAAGTCGTCATACC	alt_4645_RC	33	34	73	45	32	33	26	49	34	41
CGAGGTCTCGTTAAGA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GATAATGGAACCTCAG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GCTGCGAGTGATACGA	alt_4645_RC	35	45	46	43	20	46	25	32	26	36
TTTCTTGGGTGGCGAT	alt_4645_RC	87	91	109	88	75	100	67	81	85	75
GTCTCGGCTTGAATCA	alt_4645_RC	62	62	74	61	57	66	68	82	61	60
TAGTACCGTGGTGTGT	alt_4645_RC	51	46	58	55	39	45	39	41	55	54
ATTCATATGGAAGGAG	alt_4645_RC	23	22	26	18	10	22	16	17	9	18
TGAGGTTCTAGGGACG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GAACAACGTGCGGCCG	alt_4645_RC	13	5	15	6	8	4	10	5	4	5
TCACCCCATCGCAGGG	alt_4645_RC	34	38	26	41	50	31	41	28	45	39
CCTCCGGCATAATTCC	alt_4645_RC	8	7	9	15	6	11	6	7	8	12
TTCGCCGGACATCTCG	alt_4645_RC	10	8	11	7	8	10	4	9	8	5
GGTGCTGGCATAGCCA	alt_4645_RC	11	7	8	7	4	9	5	10	2	6
ATGAGACAATTTGGCT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TATATCGATCTATTCG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TGTATATTTTTACCTA	alt_4645_RC	12	12	17	18	5	4	3	8	7	7
TTGGTTTTTTGTCAAT	alt_4645_RC	21	38	25	43	36	37	13	29	20	24
TTAGTTTCCCCCGGCT	alt_4645_RC	3	6	6	4	3	4	2	4	7	7
CAAGTATAGGGTGTCC	alt_4645_RC	13	12	25	12	27	13	8	12	21	18
AATTCTCATAGGTCTA	alt_4645_RC	15	12	22	10	16	11	13	12	7	18
CTGCTTTGATGTCTGT	alt_4645_RC	7	2	11	6	6	11	8	8	7	3
ACAATGCACTATGGAC	alt_4645_RC	160	131	207	201	144	170	144	191	112	154
TTGCCGTTATTAGATG	alt_4645_RC	7	5	13	7	6	2	8	7	14	10
TGGGTTTAATACTAGG	alt_4645_RC	44	34	57	49	25	54	49	54	38	46
CGGGTTCGATAACCAC	alt_4645_RC	59	30	66	45	47	44	57	61	44	55
TAGAGGTATTATTATA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CCCAACGTTACGTTGG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GTTACAATAGCACCAG	alt_4645_RC	6	7	16	8	9	6	8	11	9	3
CGCCGCTTTTAAAGTC	alt_4645_RC	40	34	65	43	43	37	63	38	64	22
AGTCATAGCCATCTTC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TGCGCTCGCCTACCAT	alt_4645_RC	159	117	172	172	118	182	144	151	112	132
CTCCATGTTCCCCTCC	alt_4645_RC	16	34	24	31	34	25	26	20	30	14
TCGCGTAACAGGCGAG	ref_4645_RC	4	10	10	5	9	13	5	8	9	9
GGCAGTAGTATCATGC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CTAGACTCGGCCTTCC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CGGTATCATCTAGAAC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CCGTTTCCTAAATACT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
ACGACGGTTGTCAGGA	alt_4645_RC	54	21	50	25	36	41	35	45	38	29
GGCCCTTCCCCTAGAC	alt_4645_RC	35	42	41	29	30	34	38	27	40	29
GTGCACTCTGCCCCCT	alt_4645_RC	9	9	8	8	4	9	6	15	5	12
TTATTTGTTCGTTATT	alt_4645_RC	8	8	12	9	6	6	7	18	7	10
GCTGCACTCGTTACCG	alt_4645_RC	8	3	10	22	4	7	14	11	6	7
ATTGGCACTGATTAAC	alt_4645_RC	2	6	3	1	7	1	5	6	2	5
GAAGGTTTTTTGATTG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CTTTGTAGTATGCTTA	alt_4645_RC	3	12	9	8	10	6	7	3	10	2
CGGTACGGATTCATGT	alt_4645_RC	11	11	24	12	9	15	10	17	14	18
CTAACAACTGCCTGGG	alt_4645_RC	22	28	34	40	30	21	25	23	20	29
CCATGATAGTTCGAAA	alt_4645_RC	12	30	22	25	22	18	24	16	25	18
TTTCGGCCGCGCTTGG	alt_4645_RC	11	5	9	20	9	7	7	15	4	10
TACGTACTTGGTAGTG	alt_4645_RC	18	15	32	23	17	18	8	20	21	12
ACTTATCGTGCTTATG	alt_4645_RC	24	16	15	26	14	15	18	23	16	16
GACCTGTGCGTTCCAA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TCGGTTGCGGTTTTTG	alt_4645_RC	10	5	15	11	8	11	12	8	11	7
TGGCGAAGTTGTGTGA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CATCGCAGTGTTTGAT	alt_4645_RC	194	147	177	198	144	188	152	155	169	160
CTCCCGACCAGACAAT	alt_4645_RC	7	19	21	8	14	18	13	11	20	10
TTCTGTTTGGGTGCTT	alt_4645_RC	27	30	29	38	27	23	37	36	25	25
GTCTTTCCGGAGCTTT	alt_4645_RC	23	12	24	33	20	22	27	32	14	28
CTCCCGCCTTAATCGA	alt_4645_RC	47	43	45	51	60	33	57	31	47	36
AGACGTCCGTGATACT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCTTAGGAAACG	alt_4645_RC	39	31	37	49	23	48	47	35	39	27
GGAGGACAGGAATCTG	alt_4645_RC	12	13	15	11	10	5	4	7	7	8
AATAGCTCAGTGTGTA	alt_4645_RC	32	32	40	38	29	35	32	29	36	46
TAAGGCCGCCTGGTCG	alt_4645_RC	11	6	5	4	5	5	7	6	11	6
TAGTTTAGGTTTTAAC	alt_4645_RC	0	2	0	1	0	0	0	0	0	0
GAGCTCTATGTGGACC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CTGTAGCGTGTAACGA	alt_4645_RC	209	180	251	199	151	206	164	176	175	195
TAGCCCTTTAACTTAT	alt_4645_RC	3	5	9	7	11	4	8	3	5	8
CATTTGACACCTTATG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
ATGGCTCCGCATTACG	alt_4645_RC	37	33	62	50	27	53	34	61	36	42
TTCTTTTTCACCGTGC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TGATATTGGACTTTGT	alt_4645_RC	7	11	13	23	14	14	9	17	13	17
ACGAGGGTGACTCCAC	alt_4645_RC	3	1	6	3	2	3	2	1	1	0
GCCTTGAAAGTTGGCG	alt_4645_RC	18	8	12	22	10	8	7	13	12	7
GCTTAAGTCACTTATC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TGGTCGAGATACTCGC	alt_4645_RC	34	43	61	30	25	40	23	26	29	31
CTTCGCCCAAACGTTT	alt_4645_RC	4	21	7	3	30	10	24	2	24	5
CCGTTTTTAGATAGGT	alt_4645_RC	10	22	17	11	21	9	24	10	16	11
CGCAGTGCGGCCACGC	alt_4645_RC	38	25	42	55	43	40	30	48	24	29
TTTCCTTTCTATAGAA	alt_4645_RC	35	17	48	36	8	30	30	31	36	29
CATCCCCACTGCGCGC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GCTTAGTAGCTGGTCA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GGTATATGTACATTAC	alt_4645_RC	20	18	33	33	16	17	23	21	27	18
CGCGAAGTCGTCCTGC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
ATTGATGCGTGTTACT	alt_4645_RC	18	8	17	16	11	12	9	15	7	9
CTCTCGAAATTCATGG	alt_4645_RC	20	21	17	18	16	21	13	23	20	19
TCCGTTTTGCGGCTAG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GATTTACCCCAACGGC	alt_4645_RC	86	39	72	69	49	59	39	72	68	48
CCAGTGTGGGAATTGT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGATGTTGGACT	alt_4645_RC	152	115	158	123	110	134	108	125	104	116
AGGCACGACAATTTTT	alt_4645_RC	73	54	83	97	69	89	69	81	75	73
AGGAATTTTCCTGAAT	alt_4645_RC	5	2	10	4	0	8	5	6	5	5
GAGCGATGGTTACACT	alt_4645_RC	20	26	34	20	15	22	11	11	22	17
GGGGTCGGTGCATGCT	alt_4645_RC	1	2	1	2	2	0	1	1	0	1
CTGACACTCGCGCCAG	alt_4645_RC	62	53	55	46	60	54	45	55	62	60
GGTATCGGGTCTATTT	alt_4645_RC	36	26	31	27	17	24	12	31	19	25
AAATGGGGTTATCCTA	alt_4645_RC	21	24	22	31	20	27	25	26	17	24
GTTCGTGTACCGTGTA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
ATAATTTGCCAAGTCT	alt_4645_RC	40	19	59	37	29	36	32	35	21	35
TTCAGTTGTCTCGGTG	alt_4645_RC	6	6	16	4	7	15	5	15	8	5
TCAACCATTGTGGTGG	alt_4645_RC	11	7	15	19	8	12	8	5	3	10
CTCGTAGTGTGTTTTT	alt_4645_RC	129	127	115	107	109	94	103	98	105	78
TGGGCTTGTTCCCTAA	alt_4645_RC	272	174	272	258	198	232	230	196	199	218
TTATCTCCGTCGTTGA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TAGATCAATCGCGAGC	alt_4645_RC	49	43	45	37	23	39	30	45	55	33
GCTAGCCTACTATGAC	alt_4645_RC	19	28	21	34	36	12	25	36	22	15
CTAGATTCAGTATAGT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GTCTTTATATCTTACA	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
AGGTAGTTTGGCGGGT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GATGACTGTCTGGCCC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
GCCTGGATGGTATCCA	alt_4645_RC	9	2	9	1	1	6	5	6	3	5
TGACCGAAGGTAATAG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TGTATTTCCATTGCGA	alt_4645_RC	8	7	29	18	16	12	10	18	9	18
GGAAGAAATCTCGTAC	alt_4645_RC	6	9	6	7	6	3	13	6	16	6
TCAACTGAACTTATCG	alt_4645_RC	22	10	13	21	18	18	20	13	20	17
CCAGATTGTACGATTA	alt_4645_RC	4	7	10	9	7	6	6	7	12	8
GACGGTAACGTTCCCT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TTTATCACAAGCGACT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTTGTTATTTCT	alt_4645_RC	41	24	46	36	20	33	30	34	27	23
ATGTTTTATGCGGCTA	alt_4645_RC	6	8	6	6	8	9	4	6	3	4
GGCCGCTTGTCGTTGT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TCTGTCCAGGGTCTCT	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TCGTGCCTGACGCAGC	alt_4645_RC	65	47	97	64	53	58	50	57	51	48
GTTGTCCCTATTGAAC	alt_4645_RC	97	77	124	94	85	86	78	94	89	105
CTCTACTTTAGTATGC	alt_4645_RC	44	43	40	43	38	38	45	50	35	38
TAACCTTTCTAGTGGA	alt_4645_RC	28	16	26	34	21	44	22	36	32	23
GCGTAAAACGGATACC	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
CAGTTACGGTACATTG	alt_4645_RC	0	0	0	0	0	0	0	0	0	0
TTCTCAGCGGTCTCTT	ref_2295_reverse	4	10	8	6	9	8	10	4	19	7
CGTCTGGATATGGATA	ref_2295_reverse	44	101	62	58	106	54	123	64	116	46
ATATGTTCGATTCGCA	ref_2295_reverse	54	59	59	32	66	40	48	36	77	42
CAATTCCACCCCGAGT	ref_2295_reverse	7	9	4	5	8	2	4	4	4	5
CGATCGCTTCATCTGA	ref_2295_reverse	7	10	15	12	9	2	15	8	11	6
CGGGTTTTATACCCAA	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GCACCTTAGGGCTAAG	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGCCGATTGCATA	ref_2295_reverse	150	235	189	166	251	167	221	129	250	134
GCGTTCCAGTTAGCCT	ref_2295_reverse	2	3	1	1	0	0	1	2	3	0
GTTTGTGTCATTTAGC	ref_2295_reverse	45	65	37	29	40	39	65	25	81	17
GGCGCTTGCTTTCCAC	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCAAAAAGTGCAA	ref_2295_reverse	11	17	9	5	17	7	18	17	19	6
GGTCTTTTTTTAGCGC	ref_2295_reverse	8	22	21	7	12	14	14	15	14	9
CCAGCTCGAACGTCTA	ref_2295_reverse	24	54	29	37	74	17	66	34	75	20
TCTAATTTGTTGAGCC	ref_2295_reverse	1	0	0	1	0	0	2	0	1	1
AGTGGATTTATTGACG	ref_2295_reverse	62	78	78	63	83	64	95	68	117	65
CTGGTGACCGAAGTTA	ref_2295_reverse	25	78	22	30	105	28	103	26	107	26
GTATGATTCGGGAATT	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
ACTTATGAGGTGTATT	ref_2295_reverse	32	60	44	32	67	35	57	35	49	31
AATGCCTTCCAAACAC	ref_2295_reverse	43	60	51	38	43	31	45	28	53	30
CGCTTGCAATAGCTCA	ref_2295_reverse	52	115	50	55	116	43	129	45	107	37
TCCAGGGTTCCACTGA	ref_2295_reverse	74	134	96	88	131	95	154	61	144	88
TGTCGTGTTGTCGTAT	ref_2295_reverse	33	28	26	19	24	19	34	19	35	39
CCTGCCACCCCATAAT	ref_2295_reverse	22	28	27	28	43	20	40	19	40	22
CGAGTGGTAAGTGTAT	ref_2295_reverse	60	82	54	60	82	41	92	53	68	52
GCCGTGATTCTTCAAA	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GTGCACCCAGTTTTGC	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTCACAAGCGCAC	ref_2295_reverse	17	29	19	16	34	22	37	17	35	18
TTGTTTGCTCTGTCCC	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCATGATTCTGTG	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTGTTTAGTTCTC	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAATGTCCCGTGG	ref_2295_reverse	10	20	14	12	15	12	20	11	21	6
TAAGTTGTGACGGTTT	ref_2295_reverse	13	31	11	16	29	17	18	19	16	16
ATGGGTTCGAGCACAA	ref_2295_reverse	28	50	36	25	53	31	53	30	63	23
CTGCCCATATCCTCGG	ref_2295_reverse	16	40	24	8	30	14	35	11	34	10
TTTATCCCTTGCGTAT	ref_2295_reverse	40	56	43	43	60	43	68	40	59	31
ACGGTAGCATATGCCA	ref_2295_reverse	11	12	15	7	20	16	13	12	15	7
CTACCCCCTACACGGT	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCCTTCTATGACA	ref_2295_reverse	8	24	23	20	19	22	32	19	27	20
GCACCTAGGGGAGATT	ref_2295_reverse	25	26	15	15	36	19	25	18	29	10
CCCTGCGCAATTCAAC	ref_2295_reverse	3	5	7	5	7	6	3	4	2	3
CGTCATGTAGTGTTTC	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCTCTCTATTGCA	ref_2295_reverse	17	81	16	5	68	9	75	5	92	6
CACCCTCGCCACGACT	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
CATACCTTTGTTTATT	ref_2295_reverse	19	26	13	16	41	17	39	15	27	15
GATTTGTAAATCGTTC	ref_2295_reverse	100	154	102	85	164	93	157	98	193	89
TGGGAGGTATATTAGT	ref_2295_reverse	70	107	85	47	107	71	104	60	98	52
AGTCTGGCCTGTTGCT	ref_2295_reverse	13	23	10	11	19	10	27	9	18	13
GTAATACACAATGTAT	ref_2295_reverse	27	49	32	29	43	18	42	18	58	26
TCCTGAACAGTAAACC	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GTCTATGTCCTTGCTG	ref_2295_reverse	21	24	18	15	16	10	27	19	30	20
CTGCGTTGGCTCGCTG	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GGATACACATACAATG	ref_2295_reverse	146	150	165	166	212	139	212	145	234	142
AAACCCCTGGGTGCGG	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
TAATTATCATTTTTGT	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
TACTTACCTTTGGATT	ref_2295_reverse	7	91	2	5	88	6	92	8	94	9
AATTATGCGCGGAATC	ref_2295_reverse	27	56	38	39	50	30	57	42	53	29
CCTAGGGAATTTCGCG	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GTAATGCATATCCATT	ref_2295_reverse	14	27	20	14	30	22	30	20	30	6
GTCAGGCTAAACACTT	ref_2295_reverse	16	20	10	14	32	11	44	11	38	12
ATTGCCGGGGTTGAAT	ref_2295_reverse	48	80	69	61	61	53	95	48	72	39
ACAGGCTATTTGCCTT	ref_2295_reverse	4	4	3	4	10	6	11	5	8	3
GTTTTTTTTCATCCGT	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTTATTATTGTTT	ref_2295_reverse	1	5	1	3	7	3	3	4	10	4
TAGCCCGGGATGCAGG	ref_2295_reverse	18	29	14	25	28	22	23	18	34	9
TTGGCAGGGATATACG	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
ACCCGTTCGTAGAGGT	ref_2295_reverse	41	88	47	50	82	50	90	62	82	44
CTCTCTGCACCTGGCC	ref_2295_reverse	13	19	24	14	17	23	19	20	21	16
ACATTGGCGACCCTTC	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTCCGTCAGACGT	alt_2295_reverse	2	2	2	2	1	2	3	1	3	0
TCAGGTGCGGGCAGCG	alt_2295_reverse	24	44	41	44	64	45	47	27	46	38
TTATATGGTATCACAG	ref_2295_reverse	24	30	15	14	43	21	35	24	35	26
CCCGTTCTCATTGTAT	ref_2295_reverse	4	13	5	6	12	4	9	4	16	7
AGCTTGATAGACCGCT	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTGTTCTATAGTT	ref_2295_reverse	7	17	13	15	24	8	20	12	25	5
TTACGAGTTGAGCTCA	ref_2295_reverse	0	0	0	0	0	0	0	0	0	0
GTATGCGATGATTGAT	ref_2295_reverse	8	14	7	7	8	4	11	3	12	3
GGCGTCGGATAGAAGC	ref_2295_reverse	2	5	7	4	3	3	15	5	15	3
GAAGTTTTTTGCATAG	ref_2295_reverse	4	7	10	5	3	6	10	3	12	6
CACTGAGTACGTTGGT	ref_2295_reverse	33	55	50	40	63	57	50	31	61	36
GGACGTAGATTTGCAT	ref_5125_fdr	90	61	109	87	37	102	52	70	54	96
TATAATAGCAAAAAAT	ref_5125_fdr	26	13	39	28	9	13	19	23	13	22
GGCGTTCAACGTGATT	ref_5125_fdr	20	7	26	17	15	24	16	19	15	11
ACAAGATCCTGGGTTC	ref_5125_fdr	2	1	4	4	2	1	3	3	2	1
TTATTCCGAATTTCAT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CTATAATGGTTCTTCC	ref_5125_fdr	80	26	100	107	52	86	64	86	56	73
TACTCGGCTAGTCCTC	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCGGTTGGTATCGGGT	ref_5125_fdr	107	60	119	103	61	106	63	98	73	84
TGGAGCATACCGACCG	ref_5125_fdr	2	0	3	3	0	4	0	1	2	3
GCACACGGCGAGGATC	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGCTAGCGCATCCGGG	ref_5125_fdr	4	2	4	8	2	3	5	3	2	7
TATTATGCTCCATACC	ref_5125_fdr	86	54	140	103	55	100	64	92	62	97
GGAGTGTAGGTCTTTA	ref_5125_fdr	3	2	5	6	5	11	4	4	4	2
CGGTGCTTTAGTACTA	ref_5125_fdr	20	9	24	18	17	23	7	16	14	18
ACCAACCCTACTTCAT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GGATGGTTAGTCTCCT	ref_5125_fdr	15	13	13	13	7	15	9	25	5	12
CGTAAAGTGACAGCGC	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTTCACGAACTTGCTT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTCACAGCGTGA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCTATATTCTCTTAGG	ref_5125_fdr	24	5	23	15	11	17	9	13	12	11
GATAAGTTTCAGTCTC	ref_5125_fdr	43	36	47	46	25	52	39	49	40	48
GCTGTTAAAATCTACT	ref_5125_fdr	14	9	19	13	5	21	8	17	14	10
CGTATATAGGTCCTTT	ref_5125_fdr	26	24	38	37	16	31	34	27	22	31
ACGCTCCAGAGTATAT	ref_5125_fdr	103	71	125	143	80	127	81	97	76	109
TCGCGTCCTTCTCGTA	ref_5125_fdr	9	15	20	11	9	4	16	13	8	16
TTTCCCCCGATCAAAT	ref_5125_fdr	60	37	78	80	65	40	65	68	64	51
AAATTTCATAGTTCTG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TGAAACGCATGCCCGG	ref_5125_fdr	70	51	83	79	52	79	42	65	35	64
TTCACGGACCGTGGTC	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCCACAGCCCTGTAAA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCCACCGTTGAGA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTTCAATCGCTGG	ref_5125_fdr	46	27	72	60	33	43	29	54	31	31
CTCACTCAAGGCTTTT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACAATGAGCCTAGGGG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCCTCGATTGTCT	ref_5125_fdr	0	2	0	0	0	0	0	0	0	0
CGGCACTACCAGTTTC	ref_5125_fdr	19	10	23	13	15	12	6	19	5	7
TTCAATTTCATTAATG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGAGCTACCGGCC	ref_5125_fdr	18	8	16	12	7	7	7	9	6	7
TCTTCTATTAAGCTTG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCGCATCACTACG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CACATTGTCTTAGTCC	ref_5125_fdr	38	29	56	42	19	39	24	54	42	33
ACATCATTTAGCGGGC	ref_5125_fdr	50	32	71	61	28	63	43	44	34	55
TGCTGAGCGAGAGTCC	ref_5125_fdr	78	59	110	61	53	72	51	79	55	74
GGCCGTATCTAGATGG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCAATTTGATTTACGT	ref_5125_fdr	6	2	7	4	4	12	6	4	4	6
GGCACTCAACGAGTAG	ref_5125_fdr	27	16	25	24	21	27	12	23	20	26
AGAACACGAGGATGCT	ref_5125_fdr	41	36	40	42	25	39	34	39	29	34
AGTATGTCTAAGGGCC	ref_5125_fdr	76	54	102	71	41	70	44	62	46	79
ATAGGCCTACAATATG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TAAATCACAGCCCCCT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGAGCTATGCTGA	ref_5125_fdr	5	6	3	10	4	11	8	4	2	8
GTTCGAGACTGATTGT	ref_5125_fdr	36	15	32	37	27	29	19	31	20	37
TGGAAGAGAAAACTTC	ref_5125_fdr	81	54	96	87	59	74	61	67	70	70
ATCGATTCGGCGACTC	ref_5125_fdr	25	24	34	36	15	23	16	30	27	34
TGAGCATTGGTCTTAA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTGCCGATGTTT	ref_5125_fdr	51	29	67	54	26	53	38	30	32	47
TGGGGGTCCCCAATGT	ref_5125_fdr	410	215	489	410	219	389	224	383	255	319
GAGCCCAGGTTCATAA	ref_5125_fdr	23	19	27	28	16	26	13	16	15	19
CGTATGCAGCCTTTTT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGACTCGTCATTT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTAGCCTGCCTAT	ref_5125_fdr	68	48	69	55	37	48	47	50	37	59
GCAGTTTCGTTGATCT	ref_5125_fdr	147	83	174	163	86	153	93	136	96	129
TTACTGTTCCTTTCAT	ref_5125_fdr	4	3	8	7	3	4	3	4	2	8
ACTCTTTCCGGTTCCA	ref_5125_fdr	11	3	7	14	3	6	4	7	5	9
TGCTGTCTTTCTTTGT	ref_5125_fdr	15	7	22	13	9	17	14	13	19	9
CCTTTCGTTACTCCAA	ref_5125_fdr	64	40	68	70	42	55	58	49	53	52
ATCCCGGGTTAATGCA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACGAAAGGCCTAGTTC	ref_5125_fdr	27	24	40	32	17	28	14	28	15	23
ACCTCCGTTGTCAAAG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCGCATTTATGTG	ref_5125_fdr	74	51	103	74	55	69	54	62	55	70
TATGTTCTGGTTCGCC	ref_5125_fdr	28	18	57	35	22	49	28	45	23	28
GCCGTAGCATATCCTG	ref_5125_fdr	14	10	19	20	19	20	10	20	6	9
GGAATGCCATGCGCTA	ref_5125_fdr	1	0	5	3	1	2	2	2	3	2
CGGAGTACAGTTGGTC	ref_5125_fdr	10	8	11	13	5	5	4	9	1	6
GTTATCCCTGCACTCA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TAGTAAGCTCTGCGGA	ref_5125_fdr	71	30	72	64	41	50	27	58	39	50
ACAAGTAGTAGAGTAT	ref_5125_fdr	33	17	31	38	21	34	21	29	16	34
CGCACTCTTTCGTGAA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACGAGATGCATATACA	ref_5125_fdr	51	24	65	47	31	49	24	45	19	30
CTCTTGGTTGTGCATC	ref_5125_fdr	2	5	10	6	11	6	10	6	8	5
TTTTCACATTGATCAG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAGTTGCTACCCT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGTTTACGGGGTG	ref_5125_fdr	59	49	69	66	27	51	36	55	38	47
ACTACCTTACTACCCA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTTTTTAGCTAT	ref_5125_fdr	51	18	59	62	32	63	36	70	37	55
CAGCATTTTCTGCATA	ref_5125_fdr	14	8	20	8	7	6	10	14	7	12
CCGCACTTTTATACCA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TAGATAATCCCACGTT	ref_5125_fdr	14	8	14	14	7	7	10	15	7	15
CGAACCGCAAGAGACT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACATCATCAACGGTTA	ref_5125_fdr	11	6	15	12	8	15	2	17	12	14
TGCGAATCCGCTGCCC	ref_5125_fdr	14	17	36	26	10	17	17	23	13	20
ATTCTGCTCTTCTACT	ref_5125_fdr	226	98	286	301	102	223	128	247	113	223
GCAAGCGTTTTTGTAA	alt_5125_fdr	32	31	37	39	19	36	36	38	43	30
TATATCTAGTGTCGAC	ref_5125_fdr	39	22	43	27	22	35	12	41	32	25
ACCTTGAGAGTTTCAG	ref_5125_fdr	24	33	43	35	30	36	23	33	24	37
TCTCGACTCATTAAGA	ref_5125_fdr	66	67	69	73	51	76	58	81	69	63
ACCGGCTCCCTCTTTT	ref_5125_fdr	57	85	88	70	68	66	100	62	75	54
TGGATGGAAACTCGTA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CAGCCAGACTGTTAAG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CTAGTGCAATAATGGC	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTGGGATCTATGG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGAACCCGGTCACAGT	ref_5125_fdr	24	9	22	22	4	21	11	21	13	10
CATCAAGCTCCAATAC	ref_5125_fdr	27	13	40	26	24	22	21	28	28	19
GGTTCTCATGGAGTCC	ref_5125_fdr	28	21	30	21	26	25	18	20	21	23
AGTCTTGGAGTTGTTG	ref_5125_fdr	22	16	21	34	9	22	14	23	14	24
GGTAGGACACCCTTTT	ref_5125_fdr	150	86	179	152	91	143	84	137	97	105
CTATGATTCGATGCGT	ref_5125_fdr	142	70	177	150	79	155	83	145	95	125
CAATGCCGGCTCCGTT	ref_5125_fdr	20	13	22	24	12	15	8	25	16	20
GGCTCGTTCCTTGTTT	ref_5125_fdr	1	1	2	6	0	4	1	3	3	2
CGGGTCTTAAGCTCTA	ref_5125_fdr	28	20	47	41	15	36	13	33	35	25
CGCAGAGTGTGGCGGG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTGCGGGGTGAAA	ref_5125_fdr	20	24	36	29	19	33	16	26	16	22
ACAAGTAGAATTTAGG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCAAGTCTCTGTA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCAAATTTGTGTCGTT	ref_5125_fdr	74	45	94	96	66	75	38	85	49	80
ACCGGCTGGTAGAAAT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTCAAGACCGGAG	ref_5125_fdr	35	28	37	16	23	27	33	35	28	30
GAGTACCGGACCTCCA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGAAATTGTTGA	ref_5125_fdr	37	31	41	40	23	34	27	38	41	30
GTTGTAGGAGGAATAA	ref_5125_fdr	7	8	5	7	7	5	10	3	7	7
TTGGGCCCGGATCTTC	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTAGTTCACCGAT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTTTGATCGCCAA	ref_5125_fdr	61	41	83	54	35	63	36	69	35	76
GACTGTGGCATCAATA	ref_5125_fdr	72	39	86	69	44	58	30	56	40	70
GGTGGTAAAAGCGTTC	ref_5125_fdr	30	23	43	28	23	30	17	26	14	23
CTTTAGACACGTGATG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACCGATCTGTCACGGC	ref_5125_fdr	21	28	30	28	16	29	39	16	38	26
GAGGTTAGAGGTGTAG	ref_5125_fdr	84	33	97	60	43	59	64	77	44	69
ATTCTGGTCTTTGTCG	ref_5125_fdr	57	40	52	71	34	50	40	61	46	48
AAAAAAGCTCTGGAGT	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTTGGAGCCTTCG	ref_5125_fdr	6	1	8	8	7	14	7	10	5	7
TCCAGGAGGGCGCATC	ref_5125_fdr	11	23	21	29	11	14	20	12	32	11
ACTCGGTCTCGCGTCG	ref_5125_fdr	78	34	79	67	44	55	38	78	50	65
AAGTAGTAAAGACATA	ref_5125_fdr	41	19	56	31	26	29	17	34	29	46
AAATTACCGCCCAGCG	ref_5125_fdr	39	16	32	43	19	28	28	52	22	46
GGCAGGTTGCGCTCAT	ref_5125_fdr	88	68	112	88	57	96	57	75	69	88
CGTTCGTTGAGAGACC	ref_5125_fdr	53	80	83	77	59	62	55	52	70	62
GGTGCGGGTGGTTCTA	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCTAAGATGTCATTTC	ref_5125_fdr	26	22	24	27	9	22	23	25	19	17
ATCCAAGCTAGGATAC	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGGCAAGGATTGG	ref_5125_fdr	14	9	21	29	16	29	11	14	10	27
CGTTCCGTTCGCCTAC	ref_5125_fdr	14	9	12	12	5	13	10	7	12	11
CCCTGAGTAAACTCTT	ref_5125_fdr	62	31	62	43	38	54	18	51	24	40
ACTTTCGTCAGGCAGG	ref_5125_fdr	0	0	0	0	0	0	0	0	0	0
TGACTATCCCTGTCAC	alt_27_negative	46	69	56	57	88	45	62	43	77	44
ACCAGGTTTCCCTCGC	alt_27_negative	12	46	31	28	46	16	38	13	41	13
GTGCTTGGTGTCTTCG	alt_27_negative	20	24	15	14	20	7	24	12	24	8
TCTCTGTATTAGGTCA	alt_27_negative	38	43	40	24	54	32	52	31	45	28
ATCATTTCGCTCGAGT	alt_27_negative	33	59	26	39	60	26	71	29	70	28
CAGTGAACGATTCGTT	alt_27_negative	12	17	14	17	15	4	9	12	19	12
GTTGTATTAGCCTTGG	alt_27_negative	12	23	14	7	21	8	20	10	14	6
GTATGTGATTTGCAGT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TCTATATATATTTATT	alt_27_negative	12	11	6	6	23	9	13	6	9	6
TCATGCCTGGTGCCAG	alt_27_negative	13	21	15	12	16	17	19	11	22	19
ACCTGCTACTCTGCCC	alt_27_negative	0	0	0	0	0	0	0	0	0	0
CCGCTCATCACACTGC	alt_27_negative	6	9	6	9	11	8	17	7	18	11
GCTCCGGGCTGATTTA	alt_27_negative	24	25	14	12	13	14	26	12	10	11
CTTTGTTTCATTTAGT	alt_27_negative	48	71	52	39	88	53	75	45	80	51
GGTCTAATTAGGTATT	ref_27_negative	7	16	9	2	16	6	22	6	8	6
CTCGTCTCAAAGACGC	ref_27_negative	16	17	9	15	42	11	27	18	28	14
TTTCCCAGTACGACCT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
GTCTGAACCTTAGGGT	alt_27_negative	17	33	26	20	45	18	41	13	52	22
CATATCGCGGAGGGTT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TCTCCGCCAGGTATGG	ref_27_negative	38	54	36	30	34	37	37	33	54	28
CTTTCCATTCGAATCA	alt_27_negative	10	14	5	12	14	8	16	9	15	9
CCTCTGGTTCATACTG	alt_27_negative	1	13	3	1	6	1	5	2	3	0
AATGAACGGGCTTGCT	alt_27_negative	22	34	26	29	44	19	33	24	40	20
TATGGCACCCGCTAAG	alt_27_negative	0	0	0	0	0	0	0	0	0	0
CGACGTGGTCACTGCC	alt_27_negative	6	10	9	17	20	16	15	7	13	6
CTTTTAAGGCTGTCTC	alt_27_negative	12	20	9	9	20	10	24	12	18	10
ATAATTTTAATGTCCA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
CTCTCTCTTCTGTATT	alt_27_negative	3	10	7	7	5	0	5	3	1	3
CTTTACTCTTCATCCG	alt_27_negative	38	49	37	35	50	30	40	35	51	35
ACAATTAGAGCCGCCC	alt_27_negative	11	18	9	6	21	14	20	10	19	12
TATGGTACCCTCGATA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
ATGGTCATAACTTGGC	alt_27_negative	13	19	17	10	14	10	21	8	22	7
ATACGTATGGCATCTA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
ATCTATTCGTCATGAA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
GTGCCTGAAAAACTGT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TTCGCTCTCCTTACTT	alt_27_negative	40	38	32	39	36	31	29	21	28	35
ATGTCATCAAAAGGTA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
CCGTCGCCTGTAATCC	alt_27_negative	27	56	32	27	56	22	68	24	68	23
TTGTTTGTGACACTTA	alt_27_negative	30	56	39	38	66	36	85	41	67	24
CAGGGTTAGAGAATTA	alt_27_negative	7	8	3	5	9	8	22	7	7	5
TTAGTGGAACCCATTT	alt_27_negative	1	10	1	0	4	0	3	3	3	1
GGTTCGCGTTAATGGT	alt_27_negative	26	29	14	10	20	11	34	20	23	12
CGGCTGCGTGGTTTCA	alt_27_negative	2	2	5	2	6	2	2	4	8	3
GCTCATTTATCCTAGT	ref_27_negative	35	51	33	24	53	39	48	28	75	24
TTTCGGCTGGAGCACC	alt_27_negative	0	0	0	0	0	0	0	0	0	0
AAGTCACGCGACGTTG	alt_27_negative	0	0	0	0	0	0	0	0	0	0
ATCCCAAGAGGGGTAG	alt_27_negative	0	0	0	0	0	0	0	0	0	0
GGGGGTTGAACTGCCT	alt_27_negative	35	29	27	37	43	21	46	31	46	25
GTAGCGTAAGGCTGTA	alt_27_negative	15	27	38	20	28	13	32	23	22	19
ATCTGGGGCTTCAGGC	alt_27_negative	13	30	18	12	30	15	29	19	19	12
ATGGGGTGACGCTGGG	alt_27_negative	17	21	23	24	43	24	29	13	46	28
ACTATTATGTCGACGG	alt_27_negative	4	3	7	7	5	7	4	2	9	4
GAACCTGTTCCCTCTT	alt_27_negative	1	0	1	1	3	0	3	1	1	2
AGAACTACGATTATCG	alt_27_negative	53	82	60	68	73	60	71	52	67	44
AGATAGACTCTAGCCA	alt_27_negative	71	106	71	80	102	61	105	61	122	42
CCAACGCTGCATCTCT	alt_27_negative	17	22	8	4	27	13	26	7	33	6
TCAAGATCAGGCCCCG	alt_27_negative	0	0	0	0	0	0	0	0	0	0
GTGCCCATGGTGGGGT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TCTTATATATGGGTGT	alt_27_negative	32	36	20	18	28	19	36	15	30	21
GTGCAGGCCAATGTGT	alt_27_negative	13	47	26	27	27	18	34	22	49	22
AAAACAATGAGCCGAA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TTCAATTTGCTTTGTG	alt_27_negative	17	37	30	26	31	22	50	24	42	20
TCACCCTGATTCAGTC	alt_27_negative	1	0	1	1	0	0	6	0	1	2
ACCTGTATTGCAACGC	alt_27_negative	0	0	0	0	0	0	0	0	0	0
AATTCCAAGTACCCTT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
CATCTCTGAACCTGTT	alt_27_negative	12	12	5	8	12	5	15	8	21	10
TACCGCCTCACTGAAT	alt_27_negative	10	25	20	10	22	9	12	20	18	8
ACCTAGGAGTGTACTA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
ACATTTACGATTCGGA	alt_27_negative	113	160	147	130	146	119	191	116	193	105
GCACTGGTGGACTCTC	ref_27_negative	38	56	41	28	64	38	57	39	56	30
GTCGCTCTATTAATGG	alt_27_negative	37	47	32	33	32	35	52	28	39	41
CACCGTCGTAAAGACG	alt_27_negative	0	0	0	0	0	0	0	0	0	0
AGGCACTTACATCTCG	alt_27_negative	5	6	3	9	6	5	9	4	7	5
CGAGTCATCGAAGCGG	alt_27_negative	13	33	16	20	23	19	27	12	29	11
CGCTTAAACGTTACGT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
ATCTATACGTGAGGTT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
CGCCATCGACATCGCA	alt_27_negative	53	42	59	42	63	40	65	49	66	38
GTAGTCGGGTAACATC	alt_27_negative	29	30	26	18	33	24	34	19	24	21
TCGAACTCTATGATTG	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TGCGTTGTGTCGTACC	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TGTCCTTAACGGTGTG	alt_27_negative	9	13	7	6	16	8	10	6	15	6
CGTGTTTCGGACCGCG	alt_27_negative	38	59	46	32	56	29	64	29	55	28
TCAGAAAGGAAGGCAT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TTTTGAACAATGAATC	alt_27_negative	8	9	10	5	6	5	4	3	9	3
ATGCTCTATGCACCCT	alt_27_negative	0	0	0	0	0	0	0	0	0	0
CTCTTGTCCGGATCAA	alt_27_negative	7	14	12	4	10	8	15	14	19	8
GAACTCTCAAGGGGCT	alt_27_negative	45	48	53	32	44	41	41	49	44	35
GTCTACTTCTATACCG	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TGCTAGTAATGAAACT	alt_27_negative	7	2	7	5	7	4	8	3	6	4
CCGTTTAATCTTTCCA	alt_27_negative	38	48	56	43	60	25	47	35	41	32
GTGTCTGAGCTATGAA	alt_27_negative	0	0	0	0	0	0	0	0	0	0
TCTTAGCTAGAATATA	alt_27_negative	6	2	2	1	6	8	6	1	2	1
TTCTTACCGCCAGACT	alt_27_negative	53	85	71	53	82	56	91	52	103	50
CTTAAGTTACTGGACA	alt_27_negative	19	28	21	18	28	16	22	19	31	16
TTGCAATTCGAGGTCA	alt_27_negative	5	9	14	9	17	7	12	8	10	11
AAGCTCTTCAGTACTC	alt_27_negative	0	0	0	0	0	0	0	0	0	0
ACCCATGCTTGAGTTG	alt_27_negative	11	18	16	6	34	18	23	13	11	10
TCTTTGTGCTACTCTA	ref_27_negative	22	58	53	34	58	21	57	37	53	30
GTATTTCTGCACCCGC	alt_27_negative	18	15	17	12	17	19	15	12	14	6
TTAACCGTGTGCCGCA	alt_27_negative	3	6	4	2	4	5	7	8	9	4
AGACAATTCTTCGCCA	alt_27_negative	0	4	5	3	2	1	5	2	3	0
TTAACAGAGCCGCATC	alt_27_negative	44	75	37	50	90	49	80	35	68	48
CCGACGTTTTGTATCC	alt_27_negative	0	0	0	0	0	0	0	0	0	0
GAAATTTAACTTCATT	alt_27_negative	16	10	21	15	20	8	17	9	16	13
CGATAACCCTCGACAC	alt_2378_upstream	82	45	106	121	50	86	62	79	47	68
CGCGCATTCCATCCTC	alt_2378_upstream	38	21	54	66	18	36	10	30	13	32
CAACTTGGCGTGCTTG	alt_2378_upstream	104	41	107	119	37	77	42	94	54	114
GCGGGCTGTCGCGGAC	alt_2378_upstream	41	22	65	64	17	57	30	44	30	43
CCAATACAGTTGAGTA	alt_2378_upstream	71	44	129	136	49	80	58	92	50	105
TCTTGGAACGAGTCTG	ref_2378_upstream	257	80	303	272	102	273	93	247	84	198
TTTATGACACAGTGGG	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTTTAACTTTGTA	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
GGCATTTTACTCACTC	alt_2378_upstream	133	44	161	137	52	107	49	142	46	102
CCTCCTACTGTATTGT	alt_2378_upstream	68	25	57	57	23	44	25	59	18	44
CAGCTCTTAAGTTGGT	alt_2378_upstream	230	270	336	316	227	271	257	278	292	236
TTTTATGTGTCATTCC	alt_2378_upstream	31	11	33	23	7	31	10	30	8	23
ATGGGATTTAGATGAA	ref_2378_upstream	471	171	558	478	198	407	221	471	202	387
AGATCTGCTCAGTCAT	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
CGTTACCTGATGGCCT	alt_2378_upstream	33	11	37	40	10	26	14	40	10	37
CTTTCATGTTTCTTAG	alt_2378_upstream	289	109	329	290	113	263	85	241	106	228
GATTTAGCTATGTAGG	alt_2378_upstream	184	55	217	220	62	211	77	193	59	157
GTATTACCGTACTATA	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
CATTAATGGCTTCCCC	alt_2378_upstream	86	26	115	90	25	86	29	79	39	88
AACTATTCCATCCTAA	alt_2378_upstream	39	17	36	36	12	25	24	33	17	24
GGTTCTTCTAGTGCTT	ref_2378_upstream	895	336	975	1019	382	781	367	800	383	747
AGCTTGCACAAATAGC	alt_2378_upstream	25	8	25	18	10	18	8	17	15	21
TCCAGAGCAGGCAGGT	alt_2378_upstream	43	28	54	57	29	38	32	36	38	32
CGTTGGGGGACCTCCT	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
CCAGATGCATAATCTT	alt_2378_upstream	21	7	17	15	3	14	5	21	7	11
CCCCCGCTCATGGGAC	alt_2378_upstream	59	28	59	48	21	57	15	53	21	40
GTTCTGGGGGCCGATG	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
TATGAAGTTTACAGTA	alt_2378_upstream	12	3	19	20	4	12	11	10	3	10
CAGAGATCTAGTCCCT	alt_2378_upstream	179	92	199	198	72	176	87	166	83	185
CGCCACCCGTGTAAGC	alt_2378_upstream	12	37	8	7	25	6	42	6	30	4
CGTCAGGTGGATTGTT	alt_2378_upstream	87	44	132	88	23	89	44	85	39	85
GAATTCACAAGTTGCG	alt_2378_upstream	157	43	201	155	37	143	69	154	47	136
CGACAGCAGTCTAGAG	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCCTGCGCGCCTT	alt_2378_upstream	114	42	116	96	32	102	38	94	42	115
TTTATCTATCTGACTC	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTGATCGTAAACT	alt_2378_upstream	483	194	579	540	231	448	197	497	220	408
ATTAAGTTTTATTACT	alt_2378_upstream	23	12	43	39	14	34	16	34	12	26
ACTGGCAAGTAAGACT	alt_2378_upstream	68	12	65	69	34	61	29	43	17	51
ATCCATGCACCTTCGG	alt_2378_upstream	202	75	213	193	62	152	63	170	61	143
GGATTTCTAACCTCCG	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
CACTAGATGTGTCTCG	alt_2378_upstream	276	167	380	318	176	296	160	325	161	275
GGCTCCCGCTGGTCCC	alt_2378_upstream	189	69	233	216	54	180	76	208	75	171
GCAGGAACACTTTCTA	alt_2378_upstream	132	47	150	154	60	135	48	139	40	115
TCCCCCTGTTCCCATG	alt_2378_upstream	62	19	68	59	18	57	24	51	20	54
TCGCAGGCTCTTTATT	alt_2378_upstream	328	104	384	337	101	311	111	264	118	250
CGTACGGTCTTCCACA	alt_2378_upstream	72	16	72	63	20	57	17	59	34	52
TCATTCCGCCGCCCTG	alt_2378_upstream	48	19	51	61	14	53	18	51	20	48
CAACATCCTTCGTTAG	alt_2378_upstream	10	11	9	16	15	17	9	11	8	6
GCAACACTTTCCGGAG	alt_2378_upstream	31	24	41	39	15	33	16	43	18	28
ATGTTATAGTAGCTGG	alt_2378_upstream	16	5	22	23	11	31	6	27	11	20
CGTGGGACCTTAAAGC	alt_2378_upstream	116	30	137	125	45	108	58	132	47	143
ACCCTGCCCAGCGATT	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
TTACCGTATGGGTGCA	alt_2378_upstream	5	12	5	1	13	1	12	2	18	1
CCGTATCGTCCTCTGT	alt_2378_upstream	96	36	77	75	48	60	39	61	55	71
ACTGGTGCGTCGATTC	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
GGGATAATACGCTGAT	alt_2378_upstream	258	91	338	264	97	237	118	247	127	225
GTATCTATCCTACTAG	alt_2378_upstream	238	91	272	210	77	235	103	217	87	187
TTACGTTGAATGCTTT	alt_2378_upstream	20	12	15	22	10	18	11	18	2	13
AGGGTTGGGTTGGAGT	ref_2378_upstream	253	117	353	292	86	251	103	263	122	242
TGTTATGTAGTTTTCC	alt_2378_upstream	118	29	127	115	49	118	49	119	48	90
AATCGCTCTCTCGCGA	alt_2378_upstream	253	67	268	258	79	197	89	211	84	203
GTTTAAATTGTTTTAT	alt_2378_upstream	108	35	152	107	46	120	64	100	41	129
GCTCCGGGCCATGTAG	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
CGAAGAGAATTTGTGT	alt_2378_upstream	12	6	19	10	4	8	5	10	7	8
TTTGTAGTAACCCCGG	alt_2378_upstream	34	28	61	63	20	47	21	46	26	45
TCCCATTATGAGTGAC	alt_2378_upstream	38	17	46	50	16	40	17	44	24	27
CGCTTGTCATGTATCT	alt_2378_upstream	136	46	177	131	57	141	51	143	68	154
GGTTCGACACGCTTGT	alt_2378_upstream	103	45	119	132	39	109	43	106	49	90
AATCGCTCTCTCGTGA	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
TCGACCACTCCGGCCT	alt_2378_upstream	162	65	223	155	52	148	63	167	27	162
AAGTCCCTTTGGGCAA	alt_2378_upstream	24	16	28	27	17	20	8	22	7	26
GTTTGCGTTCAATGTA	alt_2378_upstream	85	43	114	103	36	98	38	83	40	68
CCTTGATCCCCACTTC	alt_2378_upstream	951	327	1218	1076	356	966	404	912	392	885
CCCCTTTTTGCCCCTT	alt_2378_upstream	13	34	17	12	28	13	30	14	38	8
TGTTTGTGTTTGGATC	ref_2378_upstream	19	6	16	15	11	19	15	6	9	17
CAGTTAAAAAAGCTAT	alt_2378_upstream	15	13	21	20	6	10	9	21	8	20
CTGGACTATATCGGAT	alt_2378_upstream	16	11	24	29	15	20	10	25	13	21
TATCGTAGGTTTCTGG	alt_2378_upstream	250	105	346	304	108	225	118	226	98	234
CCTTATTCGATTTATT	alt_2378_upstream	181	49	193	193	55	161	75	157	86	142
CGCTGTAAGTCTCTCC	alt_2378_upstream	82	37	84	86	40	77	32	59	27	54
TTTATTGATTTTCACT	alt_2378_upstream	124	51	170	128	47	134	40	122	61	108
ACGTAGCCAAGAAGGA	alt_2378_upstream	202	76	279	227	82	201	89	238	83	171
TCTGTTATTTTCCTGG	alt_2378_upstream	165	47	163	148	53	131	34	131	60	115
CTTTTTTTCGTCAAAT	alt_2378_upstream	375	120	455	394	116	331	123	361	134	334
GGATTTACATTGTGGT	alt_2378_upstream	216	69	213	217	48	193	68	191	63	149
GCGCGCACGTGTATGC	alt_2378_upstream	57	16	59	43	15	42	14	50	17	52
TTCCAAGTTCTTTGCC	alt_2378_upstream	105	45	111	128	46	95	34	101	42	81
AAACGCATGGCTCACT	alt_2378_upstream	127	48	153	150	55	116	47	133	47	136
TGTCGGTCTTGGCTCC	alt_2378_upstream	289	112	379	342	124	327	112	260	123	316
GAATCAACTACCAGCG	alt_2378_upstream	9	4	13	15	2	10	4	8	5	12
ACCTCTTCATTACGAC	alt_2378_upstream	2	6	6	6	0	4	7	3	12	2
GGACGGCAACTTCCTC	alt_2378_upstream	37	17	57	42	19	46	13	38	12	31
CCCATTAAAACTTCTT	alt_2378_upstream	57	38	86	73	25	43	31	57	43	57
TAACGGTGTGCAGTTC	alt_2378_upstream	74	23	85	78	40	60	28	49	46	66
TATAGATGATTCAGTA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CAAAGTCCACATTCAG	ref_2378_upstream	159	73	188	182	74	142	78	168	67	139
TAGAAGAACTTATCTT	alt_2378_upstream	3	0	4	4	3	7	3	5	4	5
CGTCCGTCTTCCGATT	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
TTAAATTGATTTCCGA	alt_2378_upstream	148	58	211	169	53	131	78	172	64	143
TCGCCTGTTCTGGCTG	alt_2378_upstream	68	28	99	93	38	66	46	70	38	68
GCCCCAGCAGAAAGCC	ref_2378_upstream	326	110	397	347	98	330	93	265	108	239
ATTTATTATATGCCGC	alt_2378_upstream	69	33	102	80	38	64	30	67	55	75
GTTACGCGATCCGGGA	alt_2378_upstream	112	51	129	131	43	121	44	103	42	107
GTTTCTAGACTCAGTT	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTTCTTTCCATCG	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
GTTACTAAAATCAAAC	alt_2378_upstream	180	80	237	206	84	163	66	182	51	157
TGCCGTTTACGTAGGG	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGTTAAAATTCCA	alt_2378_upstream	156	42	170	171	55	148	49	153	47	138
AGACCGTGTACTTTCA	alt_2378_upstream	0	0	0	0	0	0	0	0	0	0
GACATCGTTATGTAGG	alt_2378_upstream	28	11	46	28	9	25	23	30	18	21
CACTTGGTTAGGAGTT	alt_2378_upstream	42	37	83	96	41	73	31	92	28	55
TTTGCTGAGACACGAT	alt_2378_upstream	25	15	36	36	14	25	12	27	23	31
GCTATTTATATGATTA	alt_2378_upstream	19	13	41	41	17	24	19	34	9	33
CGCGTAGACCCTGTCC	alt_2378_upstream	65	43	70	50	36	65	28	56	37	55
TTTACTACGTTTTCGA	alt_2378_upstream	277	114	433	310	103	312	113	313	122	251
TCTATATGTCTGTGAT	alt_2378_upstream	35	11	53	41	16	45	23	54	26	41
GTATTCTAATAAGCAA	alt_2378_upstream	189	53	247	196	68	188	65	187	66	143
ATCCTCTCTCCCTCTT	alt_2378_upstream	121	47	127	134	54	90	53	120	55	86
TTCCTGATGTCCTGCT	alt_2378_upstream	118	34	102	98	33	80	32	79	45	85
TCGGATAAGCCCAGTT	alt_2378_upstream	1	0	0	0	0	0	0	0	0	0
GCAAAATTCCTAATTC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCCAGTGCCGCG	ref_2047_fdr	2	4	4	7	3	5	5	5	8	4
ATGTAATCTCAGACGG	ref_2047_fdr	4	2	3	6	1	3	3	2	2	2
TTGCTTTTTACATTTT	ref_2047_fdr	32	18	38	24	12	28	30	20	30	19
CATAAGTGGTGGGTGG	ref_2047_fdr	4	7	6	6	4	4	5	4	4	6
TGAGAACGTATAAAGT	ref_2047_fdr	51	42	52	41	44	52	54	53	47	45
TGTTTTTGGCTCATCT	ref_2047_fdr	5	2	5	0	7	7	4	7	10	4
TATCTTAATTTTTTTC	ref_2047_fdr	90	41	91	89	48	74	46	103	47	71
AAAAATAGTCCTAACG	ref_2047_fdr	390	325	485	402	267	349	279	359	319	295
CGACCCTTAACCTTTT	ref_2047_fdr	43	37	61	38	44	42	43	40	22	54
CACTCATTCAATTTTC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTCTGCCAGTGG	ref_2047_fdr	19	17	29	20	16	22	13	20	14	21
CGGCTTTAACTACTTG	ref_2047_fdr	80	48	99	69	43	87	62	92	55	69
TTGTAGTTGTCGTTGT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAGCTTCACGGCT	ref_2047_fdr	27	13	22	20	22	26	17	14	13	14
ACTCCGTCGGACGTCC	ref_2047_fdr	16	17	17	11	10	13	8	13	13	18
ATATTGCTACTTATAA	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
AATGTGCAAAGTGGGG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGAACGTCACAGA	ref_2047_fdr	11	7	19	11	5	11	11	11	8	8
CCAGCTTAAGTCAACG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTAACGGTAGTC	ref_2047_fdr	126	92	168	133	129	94	109	114	105	113
ATCGGTGAGGTTAGTT	ref_2047_fdr	31	20	22	23	22	12	17	18	17	18
GGTTGTGCGAGAGTAT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGGATATAGTGC	ref_2047_fdr	32	33	40	29	21	21	18	20	29	19
TTAATTTAAACATATC	ref_2047_fdr	61	38	51	52	27	39	39	42	36	51
TTGAACGATCTGTGCG	ref_2047_fdr	65	40	86	60	63	67	59	50	48	55
GGAACCCTTCAGTGGG	ref_2047_fdr	44	34	58	52	38	27	31	39	31	42
TTTTAGGGGCCTTTTC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CTCTATATACCCGATT	ref_2047_fdr	61	57	80	76	58	70	52	59	67	54
TACCTGTTGCGACACG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
AGACTCTGTCGCATGT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGGGTTGCCTTGT	ref_2047_fdr	92	61	128	91	61	77	62	66	63	68
AAGAAGATGCGCCTGT	ref_2047_fdr	126	97	151	129	95	141	99	112	109	111
CGATGATTGCCTAATT	ref_2047_fdr	130	101	160	140	123	139	119	134	109	100
ACGACGAGTCATCTAC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTCAGTCGCGTG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CTATTCGACAAAGTAT	ref_2047_fdr	11	14	14	11	11	14	10	10	9	13
ACCGGGCTCTGTGTAT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CAACGTTAACTCTCGT	ref_2047_fdr	114	70	132	106	87	94	71	109	91	93
TGCCTGGAAGACGTTC	ref_2047_fdr	37	23	41	42	33	33	28	42	16	32
CGGCGCACCTCTCTGG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CCAGAGTAAGTATAGG	ref_2047_fdr	136	121	190	157	115	145	103	148	119	129
TCTAAAGTACGTTTCG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
AGACGAGGGTGTCTTC	ref_2047_fdr	54	38	60	70	40	46	37	70	36	36
GGACTGCGCCTCGGAG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTTCCACATAGCG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGTGCACTGGTTCCAA	ref_2047_fdr	83	59	93	69	60	74	74	61	64	58
GAGATTCTTCGCTAGC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTGATCGGTGGTTTGA	ref_2047_fdr	39	30	48	45	28	33	47	51	49	47
CCGGTTATGGTGGTCC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCGCACGGCCTAAATG	ref_2047_fdr	19	6	10	14	2	10	7	8	16	10
GTCTACGCTCTAAAGA	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGCAATAACAAGA	ref_2047_fdr	1	1	2	5	3	1	0	0	1	0
TTTTACACAGCCTCGG	ref_2047_fdr	16	14	20	21	11	13	10	13	10	9
CCAATGAAATGGCCTT	ref_2047_fdr	70	34	70	43	38	58	36	39	38	33
TTTCACAAGGCAATTT	ref_2047_fdr	26	15	43	34	14	23	19	22	21	21
ACATTGTTATTTCTAA	ref_2047_fdr	22	20	23	33	20	29	24	30	24	28
AGGTTGAGATCTTCGT	ref_2047_fdr	3	0	2	3	1	1	1	1	0	0
GCCAGGTAACGGGTTA	ref_2047_fdr	15	19	27	20	17	25	23	16	17	18
TACGTACCCTTTTTTG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CCTGAACTGATTTTCT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTGGGTCTGGTTT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGGGCAAGGTGGGTGT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCCATGGCCGGTT	ref_2047_fdr	3	4	5	7	5	8	1	6	6	8
TTTCCGTTTGGCACCG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTTTGTTGGGCGT	ref_2047_fdr	49	39	62	46	28	58	48	48	38	39
CGGCTAAATTTCGCTA	ref_2047_fdr	53	49	68	54	38	35	51	38	38	49
CTGCTTTCTCACTTCT	ref_2047_fdr	5	3	11	8	0	9	3	7	1	4
GTCCCGTCTGAGCGTT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGGGATGCTGGGCCTC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTCTTGGAGATC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCTGAGATTTGTG	ref_2047_fdr	36	30	51	44	40	37	44	54	33	37
TCAGCTGTCGTCACTG	ref_2047_fdr	25	19	27	34	30	21	29	37	18	20
ATGTGATACGGTCAGT	ref_2047_fdr	68	56	77	100	54	82	82	83	76	50
CACCAGCCTGTAGGTC	ref_2047_fdr	78	73	90	67	53	71	64	81	74	65
CTGCGGTTATTCCGAC	ref_2047_fdr	18	11	21	15	8	13	17	11	18	9
TTCAATGGCGTGACTC	ref_2047_fdr	76	42	81	72	54	66	40	73	45	75
AGGTCCCACCTCGGGG	ref_2047_fdr	25	19	32	20	25	21	22	24	16	12
ATTTGTGATCCCTTGT	ref_2047_fdr	110	73	102	115	85	106	77	98	90	95
GCGCCCTCAGATAAGG	ref_2047_fdr	65	34	82	91	37	70	49	70	32	63
ATGTGACATAAAGCTC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCGAGTAACGGCACGA	ref_2047_fdr	23	24	41	27	17	31	16	25	19	27
CAGTGAAGCTGGCGAC	ref_2047_fdr	24	22	44	25	10	39	17	27	20	21
ACTCAGCCGGAAAGTT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
ACCAAGTCTATTTCAT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CATAACTGATACTTGA	ref_2047_fdr	38	23	43	33	21	20	26	24	25	23
CGGTCATACCTTTCCT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CACTACAAGCATTGTT	ref_2047_fdr	153	107	197	148	112	151	90	139	92	144
CACGTTCAACTTAATC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTTTACTCACAAT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAACCACATAGTC	ref_2047_fdr	25	17	24	26	11	22	19	17	15	10
TTTTTGCCCTGTATCT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTACATGCTGCAC	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTAGATTTTAGT	ref_2047_fdr	34	23	28	29	13	33	15	30	17	20
TGCCTAGCTCTATATT	ref_2047_fdr	6	9	16	10	12	5	6	8	8	8
CTGCAGATTCCGTTTT	ref_2047_fdr	17	8	11	6	13	13	14	7	9	9
CCTGTGTCCGCCTCAT	ref_2047_fdr	95	66	140	119	97	119	81	92	89	93
TACGTCTGCCCATAGA	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
GCGGAAAGATGACTTG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGTCAAATCCATC	ref_2047_fdr	3	3	5	0	3	0	1	2	0	1
ATTAAGGTTACGACCT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CTTACGACGGCCTGCG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGTGTGTGTTTGG	ref_2047_fdr	71	76	90	87	68	72	53	82	58	64
TAGTACATAAAGTATT	ref_2047_fdr	62	43	68	71	30	73	43	49	60	59
GACTATCGTTACCGGT	ref_2047_fdr	67	51	75	54	48	44	49	48	40	68
GGCCCGTTGTACATTC	ref_2047_fdr	69	48	74	55	51	68	46	36	42	56
GTATCCACCGGCTAGA	ref_2047_fdr	18	3	21	22	4	18	15	15	14	17
TTCATATTAGGATTGG	ref_2047_fdr	25	18	31	14	10	15	12	17	12	15
CTCGTTGCGATCATGG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTCTTGGCATTA	ref_2047_fdr	18	10	20	6	10	17	13	18	10	8
GCCTCTGCTGCAGCTA	ref_2047_fdr	38	52	58	68	46	34	47	49	46	36
GTGTTTTGATATGAAG	ref_2047_fdr	27	11	31	27	25	24	22	15	16	25
TCATGTACACGTAGTG	ref_2047_fdr	8	10	3	7	5	5	5	6	15	9
AGGGTAGGTTTCCATC	ref_2047_fdr	66	55	104	83	75	62	49	84	67	80
CATCAGACCTTTTTTT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
GCATCCGACTATTGTG	ref_2047_fdr	49	26	31	26	25	34	26	26	29	28
CCTGATCACAGCCTGG	ref_2047_fdr	19	31	29	20	24	23	27	30	38	17
GATACTGGAAGCACCG	ref_2047_fdr	56	28	70	62	31	55	44	63	43	43
ACCTTGCCTGCAACGT	ref_2047_fdr	1	1	2	2	1	0	2	3	1	2
CTTTAACTCTGCCTTA	ref_2047_fdr	20	25	45	20	28	23	29	24	23	21
CGACTCTAGAACAGTT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
AAATGTAGTTGAGCGC	ref_2047_fdr	12	12	24	18	8	22	15	17	14	15
CTCGATTGGAGAACCA	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTCAAGCAATACG	ref_2047_fdr	1	4	5	6	2	4	5	4	3	4
TGTCGTTCAGAGGTAT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCATACCGTGGAATTA	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGGCCACGGCGCG	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCCGGGAGTTTA	ref_2047_fdr	41	29	63	55	42	46	24	57	33	32
ACTCGCAGCGCGTCAG	ref_2047_fdr	7	4	4	7	5	7	12	14	3	7
TTTTTATCTTCTACTG	ref_2047_fdr	2	3	11	7	5	2	1	5	3	2
GGAAATATTAGAGCGC	ref_2047_fdr	47	30	54	55	31	46	28	40	35	50
CCTTTACGTCCTGACA	ref_2047_fdr	27	13	41	44	22	25	18	22	17	25
GAGGTGCCCGAATTTA	ref_2047_fdr	7	3	15	15	7	10	7	10	8	9
GTTGTGGGTTCTTCGA	ref_2047_fdr	19	34	29	16	26	21	17	30	21	15
GTGTGCTACCAACAAA	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
AATGCGGTAAGTACGG	ref_2047_fdr	189	100	189	173	106	177	130	157	120	142
ATGTTGTCTTTAGTAC	ref_2047_fdr	40	40	38	34	27	29	28	22	48	24
ATACTTCTTACTTTTG	ref_2047_fdr	4	4	8	6	7	6	6	7	4	4
CACCGTTGGGAGCGCT	ref_2047_fdr	28	16	17	14	18	18	10	19	26	21
TCAAGGCTCGGTATGA	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCATTCCAGAGA	ref_2047_fdr	79	52	79	66	43	74	62	59	43	60
TTGGTGTACTCGACGC	ref_2047_fdr	52	24	65	55	19	44	33	38	54	64
AGTCTGCTAAAGGCTT	ref_2047_fdr	13	7	18	9	18	15	12	14	10	14
AACGTATGTCCGAAGT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTCGTTGTTCTC	ref_2047_fdr	23	17	17	17	10	14	12	17	8	15
CGGCTATAGTGCTCTC	ref_2047_fdr	23	30	40	32	30	34	30	26	30	45
GGAGGCGACGGACAAG	ref_2047_fdr	35	21	58	30	14	28	22	37	30	27
CGTCTGGCTCGGCAGT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
TTTACCGCTCCTGCGT	ref_2047_fdr	26	20	17	17	16	15	14	27	22	22
TGTAGCAAAACCGACT	ref_2047_fdr	0	0	0	0	0	0	0	0	0	0
AGATGAACTTCACGGT	ref_5973_new	63	89	82	69	111	44	92	45	90	51
TGGGTCCAGTCGTGAA	ref_5973_new	5	19	11	9	11	7	15	7	20	8
CAGTTACTTGGCTCTT	ref_5973_new	2	0	0	3	3	2	5	0	5	1
TAGGCTCGCAAATTCT	ref_5973_new	0	0	0	0	0	0	0	0	0	0
GTAGTCCGGCCCGTAC	ref_5973_new	0	0	0	0	0	0	0	0	0	0
AATTCGAGCAAATGTA	ref_5973_new	1	3	3	3	3	2	7	4	4	1
GTTGTTGGCGTGTTCG	ref_5973_new	4	14	8	9	15	9	13	7	20	11
GACGGGTTTACGTGCT	ref_5973_new	51	79	68	44	94	36	83	52	95	62
TTGGGCTCGATCACAG	ref_5973_new	0	0	0	0	0	0	0	0	0	0
TGAGTAGTGGGTTGTG	ref_5973_new	4	3	2	1	0	0	5	1	5	1
ATTCAGTCTTCTTTTT	ref_5973_new	0	0	0	0	0	0	0	0	0	0
GGCGATTTCCCTTAAT	ref_5973_new	8	18	9	14	8	8	18	5	6	10
TGGCCTCAGCCATCCG	ref_5973_new	0	0	0	0	0	0	0	0	0	0
GTTCTATTGCGTTCTT	ref_5973_new	18	36	25	24	30	16	62	24	47	15
ACTCAGTGTCTTGGTC	ref_5973_new	0	0	0	0	0	0	0	0	0	0
AGGCATATTTCCTACT	ref_5973_new	18	33	15	17	23	10	17	5	22	10
TGGTCGGTATATGTTT	ref_5973_new	37	42	38	25	54	35	67	24	57	19
TCTTCTGTTATCCTTT	ref_5973_new	1	4	2	5	9	2	7	5	10	2
AACGGTCTGAGTTTGG	ref_5973_new	2	1	0	0	1	2	4	2	2	1
CGTTTGGCGATTCACC	alt_5973_new	28	62	18	18	55	29	49	28	47	10
TCCTGGGACTTTCAGG	ref_5973_new	114	197	144	108	249	107	245	81	247	89
ATGTGTCAAATAAGCC	ref_5973_new	18	31	24	20	36	13	34	12	29	15
CGACGTCACCTTTATG	ref_5973_new	9	13	16	7	18	12	16	5	12	9
TGTGTATATATGGCTT	ref_5973_new	0	0	0	0	0	0	0	0	0	0
CATCTCCAGTGCAAGG	ref_5973_new	14	26	12	12	37	15	29	8	25	12
CTTTTACCAGTCACTC	ref_5973_new	6	18	8	5	23	7	22	2	19	4
TAAGTCGCTTTACTAA	ref_5973_new	57	114	63	47	113	56	110	61	105	59
TTGGAACCCCGTTACT	ref_5973_new	0	0	0	0	0	0	0	0	0	0
TGCATTCCGATTACCT	ref_5973_new	28	60	43	30	58	32	51	27	62	31
ACCGTGACTCACGTGG	ref_5973_new	5	19	3	6	19	5	12	3	12	2
GTAACATCGACGTTTC	ref_5973_new	0	0	0	0	0	0	0	0	0	0
TAAGGTATACACCCAT	ref_5973_new	8	16	12	11	30	4	16	10	25	5
AATCTTCTAAAGTTAA	ref_5973_new	0	0	0	0	0	0	0	0	0	0
GGGGACACATACCCGT	ref_5973_new	3	11	2	4	11	2	3	3	10	2
GCATCTTTTACGTACA	ref_5973_new	46	80	46	47	106	50	92	58	83	43
TCGCCCGGACTATCTG	ref_5973_new	6	19	12	9	20	13	19	5	24	8
AAGAGTTGTTCCGGCC	ref_5973_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTTTAGCGTTT	ref_5973_new	0	0	0	0	0	0	0	0	0	0
CCTAAGCTTAAGCCCT	ref_5973_new	109	165	134	96	217	94	219	102	189	86
GTCCGATTGTTGTGTC	ref_5973_new	15	22	22	15	37	11	30	22	33	14
ATGAACGAGTCCCAGT	ref_5973_new	22	53	31	26	57	32	42	21	42	22
CGCACCCGTTGTATAG	ref_5973_new	170	330	167	152	351	130	316	125	361	143
ATCACTAGGTATTAGT	ref_5973_new	11	26	21	14	26	15	27	9	26	9
CGGGTGCCAGTTCATA	ref_5973_new	48	65	67	41	112	50	87	53	95	44
TCGCTTCGCTTTCAGC	ref_5973_new	11	17	6	5	10	8	13	10	19	8
CCCCCTGGGTGCTTTC	ref_5973_new	10	62	9	10	91	2	60	2	97	6
TCTCAGTCGATAGTCA	ref_5973_new	42	77	44	51	70	28	88	33	80	30
TTATAACATATTACCG	ref_5973_new	0	3	2	1	2	2	7	0	7	3
ATTAAGCTCTACCTCA	ref_5973_new	0	3	1	0	1	0	1	3	2	0
AGGTGGTGTTTTATCA	ref_5973_new	16	26	9	9	23	12	21	12	25	5
GTATACCTCGTTTGTT	ref_5973_new	15	43	19	15	33	18	31	26	39	21
ACAGAATTCGAGTTCT	ref_5973_new	70	163	88	74	152	84	125	66	167	72
GTTGTGTTTTAAATGC	ref_5973_new	3	4	6	2	9	3	5	4	9	8
TTGCTACATGCTACGG	ref_5973_new	18	56	28	16	54	21	57	33	63	24
AGCGAACGCTAGCTAT	ref_5973_new	26	44	34	17	48	30	75	21	56	28
TACTATTGGCTACAAT	ref_5973_new	0	0	0	0	0	0	0	0	0	0
TCTCTCCTGTATCAGC	ref_5973_new	61	92	53	39	92	56	101	39	103	45
ACTAATTAATTTTCGG	ref_5973_new	52	90	49	35	57	42	79	62	76	35
GTGGGATTTGAACCTA	ref_5973_new	0	0	0	0	0	0	0	0	0	0
GCAGGGGACTATTCGC	ref_5973_new	14	27	16	9	33	14	29	8	12	6
GATCGATCCGTTATCG	ref_5973_new	13	15	16	5	32	8	19	8	25	14
CAGTGTCCCACACCCG	ref_5973_new	0	0	0	0	0	0	0	0	0	0
CTTCGGGCTTGCAGCC	ref_5973_new	0	0	0	0	0	0	0	0	0	0
ATGTACATCTCAGAAT	ref_5973_new	17	33	33	10	34	23	35	19	38	17
CGAAAATGGCCTTTCG	ref_5973_new	12	17	12	10	18	18	31	12	23	6
GGCCTGCGCGACCATG	ref_5973_new	6	5	4	2	8	8	16	9	9	6
AATCATAGAGGTGAGC	ref_5973_new	25	39	22	27	41	23	52	17	61	23
CTTGATTAAATGTATT	ref_5973_new	28	54	22	29	46	22	56	21	59	24
TCCCCATCTGATGATT	ref_5973_new	7	16	6	5	17	3	22	4	25	6
CCAACACATGTGACTG	ref_5973_new	66	90	80	34	112	46	110	69	114	52
CCTCGGTCAATTTCTC	ref_5973_new	1	6	0	4	6	1	2	1	5	1
GGATAAGATCGAAATC	ref_5973_new	9	27	19	8	28	7	25	16	17	8
GTTTTGAAACCCGTCC	ref_5973_new	13	25	18	12	24	12	20	10	31	17
TGACGCAATCAACCGC	ref_5973_new	8	14	21	8	19	19	21	9	21	22
ATGAACTGTGGCTTTC	ref_5973_new	3	7	0	4	3	2	2	1	12	2
GTTTTCGCCATCCGTT	ref_5973_new	39	67	65	43	114	31	73	49	82	36
CTGGAATCAACACCTT	alt_5973_new	17	41	16	17	41	16	47	11	28	6
TGTCTGGTGGATTCTA	ref_5973_new	9	15	11	18	27	11	28	14	30	13
CCGTGTTTATGGGGCC	ref_5973_new	0	0	0	0	0	0	0	0	0	0
CCATTGTAGGCTTATA	ref_5973_new	11	12	12	8	14	5	24	4	18	6
CACCAGAATTACTGCG	ref_5973_new	18	72	24	17	71	13	92	17	93	16
GTTGGCCTGGAGGGTA	ref_5973_new	32	75	48	35	62	42	75	45	80	40
GATTTTTTCCGGCTTG	ref_5973_new	26	48	37	34	54	32	69	25	70	29
CGGTCGTGCTTCGCCG	ref_5973_new	20	74	31	30	85	13	76	13	73	21
ACGGGCTACTTGAGAT	ref_5973_new	0	0	0	0	0	0	0	0	0	0
AACAACTCATCCGAGC	ref_5973_new	0	1	0	0	0	0	1	0	0	0
TCAGCGATTCAGCCAT	ref_5780_new	86	110	138	104	117	81	132	89	126	73
TTCCGACATTTTCTAC	ref_5780_new	87	103	83	80	102	75	127	114	105	87
GTCGTAATCTCACTTT	ref_5780_new	18	10	13	13	10	10	22	6	16	16
TGTTGTAGGCACATCA	ref_5780_new	4	2	2	6	1	5	4	0	3	2
TTTTCTACGTCGGTTT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
GCGTGCGAGCATGATT	ref_5780_new	9	7	6	6	9	5	5	5	7	4
GATTTGCCGCACCTTG	ref_5780_new	0	0	0	0	0	0	0	0	0	0
GTCTTGCGAAGGTCCA	ref_5780_new	5	2	2	3	3	2	2	3	4	6
AAATGATGCTGAAGTT	ref_5780_new	32	38	27	22	30	22	35	18	42	24
CATCTTTGTCACGGAA	ref_5780_new	2	10	4	5	3	5	12	4	5	2
ATCCCGCGCGGTCATT	ref_5780_new	25	25	32	22	42	25	28	29	34	23
CATTCTACCTCCGTCA	ref_5780_new	40	53	34	32	63	20	64	39	65	30
TACGCTGGCGAACCTC	ref_5780_new	39	52	37	41	39	35	39	38	65	32
TCTTAGTGTTCGTATG	ref_5780_new	0	0	0	0	0	0	0	0	0	0
GCTAGTCTTGTATACT	ref_5780_new	35	49	35	28	67	22	60	20	51	31
AGACGGTCGGCACTCT	ref_5780_new	22	30	55	38	43	27	33	32	44	30
ATAACCGCGCTCGACG	ref_5780_new	18	33	31	24	23	26	45	14	42	18
TCTGTACTTTTCGGAG	ref_5780_new	38	53	40	39	47	21	40	23	37	40
AAATTGGCACCTTTTG	ref_5780_new	21	30	27	26	29	19	31	19	43	19
GTGTGTGCGTCGTGAC	ref_5780_new	15	27	22	34	30	19	27	11	38	18
CGCCCACTCTATCGGG	ref_5780_new	0	0	0	0	0	0	0	0	0	0
AGCGAGTTCTACCGTA	ref_5780_new	11	13	6	7	12	6	11	2	10	7
GGGTGCCCCCTCACTT	ref_5780_new	212	342	244	243	278	178	339	184	324	201
CCTGTAAGGGAAGGAC	ref_5780_new	11	16	12	12	16	9	15	10	18	15
GGCGAGTTTTAATAGT	ref_5780_new	10	13	16	14	11	11	27	6	16	9
ACTCTTCTTACATTAG	ref_5780_new	172	211	203	161	247	162	234	157	241	149
GACATCATCTTAGGAT	ref_5780_new	16	31	35	20	27	16	42	17	28	17
CTGACCCGTGAGTGCA	ref_5780_new	8	15	11	9	11	11	10	5	13	2
CCGTGTTGGCCCGTTC	ref_5780_new	17	14	11	14	15	21	20	15	16	8
CGCCATCTCTTAAGTC	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CTTTTAAGGTATTTTA	ref_5780_new	23	29	37	18	43	27	42	24	51	17
TTTACAGGTTTACTTT	ref_5780_new	28	27	35	29	29	17	31	27	31	30
TCGTTTTGCTCCAACA	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CAGTAAGAGACACGTT	ref_5780_new	10	7	6	4	5	5	9	4	13	3
TTAAACGCCTACACCT	ref_5780_new	2	7	2	3	1	2	6	0	5	1
GTCTTTGTAAAATTCC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TCCAGGGCTGTGACCA	ref_5780_new	1	5	1	3	5	6	0	1	4	1
TCTTCTTAACGGCCTC	ref_5780_new	25	22	23	24	23	26	37	25	39	16
ATAGGGGCCCACTGGG	ref_5780_new	39	42	42	25	34	21	43	34	47	21
GACCGCGGGACTGCGC	ref_5780_new	36	60	41	26	45	32	64	34	43	37
CACGGTTGCAGTTTGG	ref_5780_new	26	34	22	19	40	13	37	23	46	16
CCGTTTTAGCGGCGAA	ref_5780_new	20	30	12	10	19	10	28	22	14	12
CCAAAGCAGTGACGAT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
AGTATTCAACCCGTCT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CGGTACATGTTCGGGC	ref_5780_new	12	18	17	9	23	18	18	10	23	5
CTTTTGATGTTCAGCA	ref_5780_new	7	13	14	9	17	9	16	6	13	6
CGAGTAATCGTCCCAT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
GGAAGTATACGGTCAT	ref_5780_new	7	11	5	4	7	5	9	2	11	4
AATCCTTTGGCTTCAA	ref_5780_new	11	9	9	15	12	12	16	9	13	9
AATCGTTCGAGCGCTG	ref_5780_new	23	28	17	20	32	10	32	17	21	16
GTATACCGTGACATTC	ref_5780_new	10	20	8	7	15	10	14	7	16	7
GTTTGTTTTAGTAGTA	ref_5780_new	3	7	4	1	3	11	5	4	9	3
ATCGTCTGAGATCGGT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TAAAGACGCTGTTGGG	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CGAACCGAGCCAAGTT	ref_5780_new	26	21	27	25	28	33	28	22	33	15
ACGGTCCCCAATGGGT	ref_5780_new	8	11	5	9	14	4	9	9	18	9
CGTTCCCTTTTTGCTA	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TATAGAGAATGCCTAT	ref_5780_new	23	36	28	16	39	35	34	20	37	27
AGATTACCATTGCTCT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
GAGTGGGGGTTCGAAA	ref_5780_new	0	0	0	0	0	0	0	0	0	0
ACTACGTTATCATCGG	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TACATTCCTCATATAC	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CGAAGGCCCACTATTC	ref_5780_new	55	53	40	43	56	52	65	47	57	54
CTTCTTATCATCTTCC	ref_5780_new	85	94	64	69	100	63	96	71	95	73
TTTGCTCTTTACGGGT	ref_5780_new	15	15	26	3	14	9	21	15	24	7
CTCACCTTACGAAAGT	ref_5780_new	23	95	50	34	95	31	90	36	112	28
CGTTTACTGTCACCGA	alt_5780_new	65	85	70	62	88	60	113	63	116	62
GGTGACCGGGTCATGT	ref_5780_new	36	42	22	21	33	21	28	22	25	16
GTATGCGTTATTCCTC	ref_5780_new	14	15	23	11	25	20	21	18	20	15
GGTCTGTCTAACGATG	ref_5780_new	3	3	4	5	3	1	5	3	5	6
TCAACCTCCCGTGTGC	ref_5780_new	0	0	0	0	0	0	0	0	0	0
ATCCGTTATAATCGTG	ref_5780_new	0	0	0	0	0	0	0	0	0	0
ATCGGGTACAGTTGTA	ref_5780_new	72	87	88	73	90	75	104	56	116	83
CTAGCTATATCTTATT	ref_5780_new	21	31	21	23	23	16	29	17	18	19
ATTGGGCATTTCGTCT	ref_5780_new	17	46	24	27	25	26	45	18	32	31
GAACCGAGTTGTCCGT	ref_5780_new	14	26	29	24	37	19	42	19	40	19
CGAGCCACAGCTGTTC	ref_5780_new	12	35	14	7	33	18	29	3	40	11
GCCCGCACCTTTCGAG	ref_5780_new	38	59	53	43	63	39	60	40	54	36
GGAGAGCGTAATTGTC	alt_5780_new	174	262	208	181	255	185	311	179	295	174
CCCTAGGCGTCTGTTC	ref_5780_new	45	77	55	36	81	41	81	42	84	38
TACCCTATATGCTTTG	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CTGATTTTTATGGAAC	ref_5780_new	28	83	40	40	54	29	45	31	65	34
GACTTAGGTAGGGCTC	ref_5780_new	36	65	45	43	62	24	65	36	66	42
CAAAGGGTCCTTCCCT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
GTTCTATAGACTCTGT	ref_5780_new	35	48	38	23	54	31	52	21	79	34
GGACGTCAGTGCTATA	ref_5780_new	20	31	27	38	47	33	42	37	51	20
TCTATCGCGCCATTTC	ref_5780_new	5	9	8	8	12	4	8	5	5	5
CTCTTTTGCCCTCCCC	ref_5780_new	20	25	21	20	31	9	21	21	35	16
CCAACTTCGTTCGCTC	ref_5780_new	4	4	5	4	13	2	2	1	7	1
TTCCAGTGGTTAATTT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
AGCCTTGGGCCACATG	ref_5780_new	1	6	4	3	1	1	5	1	1	6
GAAAGGTGGGAAGGGA	ref_5780_new	25	16	27	15	22	18	23	11	39	22
CGTCCCCAAAACCCTT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TGTTGCAAGTACGCGC	ref_5780_new	13	13	15	13	20	12	11	11	13	7
GGGCTCCCGCGTGACT	ref_5780_new	97	168	120	111	201	102	198	101	178	119
TGCGTCCGTTGTCTTC	ref_5780_new	10	4	2	4	8	5	11	8	7	5
TGTTAGCCAGAGAAAT	ref_5780_new	8	8	9	3	13	13	15	9	22	4
GGGCGCATCACCATCA	ref_5780_new	29	24	40	37	47	24	43	12	27	23
TCAGTGCCGAGGGAAG	ref_5780_new	28	37	33	39	39	34	49	40	29	24
GGCTGGGCTTCAAAGA	ref_5780_new	52	68	52	40	70	44	62	42	58	51
CAATCGTCCAGTGCGC	ref_5780_new	12	20	13	12	19	10	19	13	22	6
TTCCTTCACGCCGCGC	ref_5780_new	17	16	10	13	20	10	18	12	16	15
TGCACGTGATATGCAC	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TTTGGTCTCTGCCGAA	ref_5780_new	140	195	200	149	193	170	238	134	250	112
CATCTCAAATAGAGTA	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TGTTTTTTGCCATTGT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
AGGACCTCCCGCGCAT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TCTTCATTCATATAAG	alt_5780_new	21	50	31	17	49	22	50	27	39	17
CCACTGTTTTATAAGT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
GACCAGCTTATCAAAC	ref_5780_new	3	4	3	0	4	1	1	1	1	1
TGTGGTCCTAGTTAGC	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CGATTTGGTCTGTATA	ref_5780_new	73	110	87	73	126	85	119	72	132	78
CTAAGACTGGCTAGGT	ref_5780_new	111	192	158	146	223	118	203	115	229	110
TCCTCACCCCCTCGTA	ref_5780_new	28	60	40	27	64	38	70	29	55	27
CGCACCTTGTGTCGGA	ref_5780_new	13	16	15	13	13	11	23	16	22	13
CGTCGCCACTGTCTCG	ref_5780_new	3	17	5	3	4	4	8	8	2	3
AAGCGTTGTTTTTGAA	ref_5780_new	18	15	30	16	25	24	20	14	17	16
ACACCGTTCACTGGGT	ref_5780_new	0	0	0	0	0	0	0	0	0	0
TACCCGGCGGCCGGTC	ref_5780_new	0	0	0	0	0	0	0	0	0	0
CAGCATCCTTTATGAC	ref_5780_new	2	18	10	12	16	9	11	6	24	6
CCTTGCTCCTCAATTT	ref_5780_new	10	22	11	8	20	14	21	16	21	7
CAGACCGAAAAAGCCA	ref_5780_new	27	52	24	31	58	25	50	16	52	23
TGCTAGCATGTGTGCT	ref_4649_upstream	11	8	13	9	11	14	12	20	16	11
ATGTATGACAACTCCT	ref_4649_upstream	21	13	16	21	17	10	12	15	22	10
TGTTATAATATTGTAG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
CAAAGTTCTCTCTACA	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
TCGACCCTTAGACGTC	ref_4649_upstream	45	57	67	53	65	45	61	52	43	53
TGTTGTAGGAGGCCTG	ref_4649_upstream	30	23	32	51	22	42	24	35	27	27
GCGCGTAATTTTGCAA	ref_4649_upstream	19	33	40	32	29	30	34	28	26	29
AGCGCTTCATTGATGC	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AGGGCGGCCCTCGTCT	ref_4649_upstream	29	16	44	25	30	36	27	26	27	22
CAGGGGTATCGCGCTT	ref_4649_upstream	87	58	100	68	68	90	59	68	59	72
TCGTTGCCCACTTCCT	ref_4649_upstream	16	15	40	19	20	19	12	29	20	22
CTTTATGAGTTATATC	ref_4649_upstream	23	19	35	24	27	27	18	21	18	17
TCACTGCGCTTCAAGG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGTTAAGTGTTGT	ref_4649_upstream	26	29	35	31	30	23	27	30	28	40
TCCTAATGCAACGTCT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
TATCCTGGCTACATCC	ref_4649_upstream	19	29	20	26	16	22	37	16	23	15
GCAATGGACATAGTTA	ref_4649_upstream	72	41	77	69	51	59	67	47	51	63
GACCGTTGCTTCCGAA	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
GGACTATCTGAAAAGA	ref_4649_upstream	92	79	114	98	63	103	76	90	94	101
GTCTGTTCCCCGGAAC	alt_4649_upstream	44	41	71	46	27	46	35	52	50	44
GGGTTGTGTCTATCTT	ref_4649_upstream	52	31	46	39	36	36	26	41	36	41
CTAGCTAACGTACACG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTTTCAATGTCTG	ref_4649_upstream	17	8	21	17	21	11	13	14	16	16
TAGGTGTAAATTTCTT	ref_4649_upstream	12	12	11	10	9	10	16	11	12	11
CCTTTTAGCCGAACCC	ref_4649_upstream	3	5	7	3	3	2	6	4	5	2
CTCTGTGGATGGTTTA	ref_4649_upstream	30	29	34	35	15	23	19	27	26	31
GTTCCAGTTCCTTGGT	ref_4649_upstream	36	32	48	44	30	29	33	37	33	35
GCTAGCTCCGCTCAAA	ref_4649_upstream	39	35	48	38	35	40	28	32	22	28
GCAGCACCTTGTCGAT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGCTACTTAGGAG	alt_4649_upstream	723	450	910	796	474	708	459	665	497	651
ATCCCTCCAGAGGATC	alt_4649_upstream	60	45	58	55	57	46	38	42	40	55
GGGCGGTATGTGATTC	ref_4649_upstream	18	21	20	22	16	20	20	15	21	22
GTCCTTTTTTCGTATC	ref_4649_upstream	32	24	47	38	30	27	28	34	19	32
CTGCAATCGCAGCATT	ref_4649_upstream	13	8	21	18	10	19	17	19	18	16
CGCGGTCCGACGGGTC	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
CTAGATCCTGTTGTCG	ref_4649_upstream	24	26	33	34	31	21	35	23	31	25
CGATTTAAGACCTTGG	ref_4649_upstream	41	35	49	51	42	49	32	48	34	38
CGCATTCACAGAGTGT	ref_4649_upstream	86	77	106	85	63	79	71	81	65	95
GCAGACAGTTGTGCCG	ref_4649_upstream	21	24	23	21	22	16	26	21	33	13
TCGCCCCTTAGACGTC	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGCTTTAATTTCG	ref_4649_upstream	6	4	4	3	2	6	1	2	4	1
TAGGGCTGGCTGCACT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AAATAGTAAAAGACCT	ref_4649_upstream	21	12	32	18	12	16	20	21	24	26
CAGGACGCTCTTAACT	alt_4649_upstream	252	169	308	253	195	256	198	245	229	230
TTCTTAATAAGCAGTA	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGACTTCTGTGGC	ref_4649_upstream	55	77	74	68	51	73	42	64	68	57
TCGTACAGTCCCAGCT	ref_4649_upstream	11	7	6	5	12	6	13	15	10	5
GTTGCTAAGCCGCTTG	ref_4649_upstream	33	22	65	45	34	36	38	32	55	27
TTCAATAAATTCGTGC	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCCTTTATTTTTT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTGTTGTACAAG	ref_4649_upstream	6	8	14	13	21	5	16	8	12	14
ATTAGCGAGGGGACTA	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTGTAAGCTGTCA	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTCGTTACAGCC	ref_4649_upstream	2	4	5	2	1	1	2	6	4	2
TCATTATTTGGCGAAC	ref_4649_upstream	79	72	84	78	86	61	73	63	75	71
TGACTCCGATTCTACT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AACCCGTTGAAGTTCG	ref_4649_upstream	42	41	37	42	34	37	47	37	36	52
TCTGGATGGTAAATTT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGCCCTTGTGTTC	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
GGCAAATCTGATGAAA	ref_4649_upstream	27	28	39	29	32	53	26	34	39	26
CTCACGGCTGGGAAGT	ref_4649_upstream	4	2	8	4	2	5	7	6	1	5
CGTAGTTTGCCTGTGA	ref_4649_upstream	33	39	42	36	39	23	31	38	26	33
ATTCTGGATACCTCAA	ref_4649_upstream	13	8	19	10	7	9	6	6	7	7
ACGGTATGTGGTACTT	ref_4649_upstream	7	5	16	9	6	10	6	10	2	6
ATTTAGCCATGGAGCA	ref_4649_upstream	102	82	124	107	78	97	85	97	99	102
GGCTGCCTGGCCTTAC	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTCGTGCAGTGCC	ref_4649_upstream	18	10	14	16	16	16	11	12	15	12
ACTTTGTCATTTCTAA	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
TTACTCGTCCCATTTT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AAGAAGCGTGGTCATT	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTCACCATGTCCA	ref_4649_upstream	47	36	69	71	49	53	35	53	42	49
ACACAGTCCTTCCCTG	ref_4649_upstream	58	34	63	62	37	50	39	45	58	45
CTGCAATAGGTTCAGG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AAAACGCTTGCCCTAT	alt_4649_upstream	58	47	61	61	30	50	37	69	45	46
CCCTTCTACTCGGAGT	ref_4649_upstream	58	65	77	47	65	65	52	54	60	46
CCGTCCCATCTGCTCG	ref_4649_upstream	19	34	34	30	39	34	49	33	51	28
TGGACATTTCTTTCCA	ref_4649_upstream	0	1	2	3	3	3	1	2	0	2
ATGCACACCAAGCGTC	ref_4649_upstream	85	92	131	98	90	99	99	96	95	102
GACTCCTCAGTCCTGG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
GCAGGATTCGTGACTC	ref_4649_upstream	61	42	61	55	57	48	43	44	46	52
TTACAATGCCGTCAAT	alt_4649_upstream	81	48	106	93	33	85	46	74	50	87
GGGCTTCCGTCTGGCG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
GGGAAAAGACATTAGC	ref_4649_upstream	5	5	5	4	2	7	5	3	9	4
CTCTCGTGAATCGACA	ref_4649_upstream	16	11	4	6	13	9	11	4	12	9
CTGTTGGCGCTAATCC	ref_4649_upstream	105	85	115	106	62	101	68	86	76	81
TCTAAGAATAGTCCGT	ref_4649_upstream	1	3	2	2	1	2	3	3	0	0
TATGTTGCTTATTGGG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
AGTCCATTTGGTAAAG	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
CGGGATTGCCCGAGGC	ref_4649_upstream	4	5	3	6	4	3	8	3	3	3
TTCTGTTTTAAGTGGG	ref_4649_upstream	45	42	45	48	32	49	46	32	35	35
ATTTTAACACGGGATC	ref_4649_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTCGCTCATCCTG	ref_4649_upstream	31	18	36	27	28	22	19	22	14	23
TGCTATGTGTTTCCCT	ref_4649_upstream	26	26	44	51	37	28	29	44	37	34
GTCTGCTGCCCTGCCG	ref_4649_upstream	2	1	11	5	3	4	11	4	4	4
TTTCTTCGCAGTTATC	ref_4649_upstream	78	44	93	92	60	63	57	66	46	65
CTGTCTCCACGCGATC	alt_4649_upstream	91	65	109	99	80	102	83	93	67	86
GTACTCGTTTCGGCGT	ref_4649_upstream	5	4	4	1	4	3	6	2	9	4
ACATGTTCCTTTTGGG	ref_4649_upstream	41	25	45	40	38	30	29	27	32	38
TCCTTGTTTAACGACA	ref_4649_upstream	17	13	14	21	14	22	24	16	10	9
CGAACATGGGTTAGAG	ref_4649_upstream	147	91	145	119	109	115	124	115	103	120
AATTCAGTCAGAGCTT	ref_618_RC	168	58	177	148	54	127	49	131	67	133
GATCTCTGATTCACAA	ref_618_RC	102	45	118	89	47	91	33	100	39	89
CGCTGGCTTTGAACCA	ref_618_RC	54	21	83	76	21	52	27	69	24	72
TCACGGCCTGGGGCCG	ref_618_RC	60	10	65	60	24	64	13	57	18	50
TTGAACGACGTTCCAA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TGGTGGTTGCTTATTA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
GTGATATTTGTGTTGC	ref_618_RC	31	6	26	39	7	45	11	22	9	27
GGGGTTAGCTTGTGGC	ref_618_RC	17	3	28	21	4	12	3	9	12	18
GTTACCTCGCCCACAA	ref_618_RC	150	59	180	147	49	148	62	126	61	157
AGCTGTCCGTCTCTGT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CAAGCGTGACCTGGGA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TTACGATTGTTAAGAT	ref_618_RC	5	3	12	14	4	13	4	12	3	12
TCTTATATTGAGCAAT	alt_618_RC	198	60	239	167	66	178	76	201	88	194
CGTGAACACAGAACTT	ref_618_RC	43	13	38	46	15	32	10	33	18	41
TGACTGAGGCCCTTTT	ref_618_RC	78	17	64	65	26	76	24	85	28	56
GTTAGGTATTCGCCCC	ref_618_RC	14	11	20	15	8	15	13	12	10	13
CCGACATGATATCGCT	ref_618_RC	111	39	154	109	32	124	30	102	35	103
CCTTCGTTACATCTGT	alt_618_RC	191	57	229	186	76	183	63	174	52	174
GACTGAGATCCCGACA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TTTCCAGAGCGTACGA	ref_618_RC	42	8	40	29	10	25	13	37	15	21
CACACGCGCTGATTCT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CTCGTGTTCAGCATGG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
ACACGTTGGCAGTATA	ref_618_RC	148	64	145	137	51	146	40	144	44	131
TCAGGGCCCTGCTAGT	ref_618_RC	71	17	87	68	26	54	22	63	16	49
GTTATATGGCCTCACC	ref_618_RC	387	149	474	402	131	338	162	420	178	301
TTCTCAAACGTTTCCT	ref_618_RC	213	67	232	182	60	199	65	157	91	184
CTTGTTTTCTCCGGTT	ref_618_RC	23	6	41	40	11	45	6	43	5	43
GTTCTTCCTGTTTCTT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
GACATTCCACGTTGAA	ref_618_RC	40	15	38	36	5	42	14	42	16	49
GGGCGCGTCGAGTAAA	ref_618_RC	69	33	97	77	24	88	18	67	34	74
TGTAGATATTTCCCAT	ref_618_RC	60	21	78	77	28	38	22	62	10	47
GCCGTGCCTCTATGGT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CAGCGCACATCTGGTT	ref_618_RC	55	38	68	59	48	48	45	63	33	46
TCCTTGTAGTTAGTAC	ref_618_RC	182	88	249	202	51	192	75	144	75	165
TCATGTCGTTCTTCGA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TCATTCACGAGTGGGT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCTTACTAGGTT	ref_618_RC	55	21	56	47	22	46	14	41	21	35
ATTAGAAGGTGGGATC	ref_618_RC	179	66	235	194	69	179	76	165	70	146
TGCGAGTCCTGCTACT	alt_618_RC	30	21	44	45	13	30	15	33	10	49
CATATTTGCCCTTTTG	ref_618_RC	53	10	52	54	15	51	15	42	11	40
AGCGTCGCGCGGGAGG	ref_618_RC	27	11	56	50	11	32	18	28	12	24
CGTCCGACCCACGGTA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
ACTTCTGAGGACCAGT	ref_618_RC	76	24	98	88	35	78	36	88	27	66
ACTTTCTTATCAAGGC	ref_618_RC	514	157	529	439	155	427	160	436	177	375
TTAGGTAGGCTAGATA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
AAGTCACTTGACACCA	alt_618_RC	222	112	257	232	105	222	113	208	124	216
TTTGAGTCCCCTATTA	ref_618_RC	203	70	249	255	74	179	69	162	78	178
CATATTTTCTCTGACT	ref_618_RC	144	30	134	147	33	128	30	115	42	101
ACGTGGGCTTCCGTTA	alt_618_RC	143	35	142	126	48	100	40	114	51	88
ATATTAGATCTTAGGG	ref_618_RC	95	38	110	113	33	85	30	74	28	78
ACGCGCGACAAGTGTC	ref_618_RC	46	17	75	39	16	48	23	36	26	57
TCGATGCAGGGTTCAC	ref_618_RC	62	26	67	67	25	77	29	42	34	53
CGACGCATGCCCCTTG	ref_618_RC	176	94	254	205	63	190	74	164	97	176
TTTGCGTACCACCCGC	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CACCTTCTTTGTGGCT	ref_618_RC	32	43	14	24	41	25	41	23	40	30
CTGTATCATGTAGCAA	ref_618_RC	245	93	278	241	103	237	103	204	99	210
CCCTGTCTCATTTCCT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TCCTACCCTTTTATAC	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TAATTTTCGATCTGCC	ref_618_RC	240	76	312	280	73	237	57	228	72	253
CCGTATCTGTGGCTGG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TCTCTTGAAGCCAGTG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
ATCTAATTCCCTGGTA	ref_618_RC	127	47	135	134	43	105	45	116	56	129
GATGTATTTGTGCTAT	ref_618_RC	31	11	51	33	9	37	19	28	19	21
GGTTTAATTGGATTTA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CCGAAACCCTAGACCA	ref_618_RC	6	6	4	4	1	8	2	5	4	2
ATACCTTGCGGAAACG	ref_618_RC	89	37	126	88	33	87	41	99	42	78
GCCGATATCTAGTTTT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
AGCTCACCTCCAAGAA	alt_618_RC	196	87	183	203	76	178	82	136	92	147
AAACTGCTATCCTGCA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
ATCGGCTCTTCGTGAA	ref_618_RC	26	5	30	28	12	24	11	25	6	35
ACAGTCTTACTTTTGT	ref_618_RC	66	19	81	64	27	61	27	58	24	69
TCTCACTCTCCCTGTG	ref_618_RC	55	65	58	48	55	58	60	41	57	58
CTCTTTGCCTACCGGC	ref_618_RC	9	8	6	2	5	4	4	5	9	7
TCTGCCACTGTGTTCG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TTGAATTCAAGGATGT	ref_618_RC	189	47	168	181	48	170	59	131	66	143
TCTCTTGTGTCGGGCC	ref_618_RC	142	55	168	154	56	139	48	122	39	121
AATGCTCAAATCACTG	alt_618_RC	70	20	83	79	13	71	27	66	20	62
ACCCGGGTTTTCCCCA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTCTCATTGAGC	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CCAGTTATTTTACCTA	ref_618_RC	0	1	0	0	0	0	1	1	0	0
GCGCTTCTGTGCATTT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CGACAGTTTGCTCGAC	ref_618_RC	0	0	0	0	0	0	0	0	0	0
CTAGCGGTTAGTGCAC	ref_618_RC	87	68	94	83	67	71	57	64	83	75
TGCACATCGATAATGC	ref_618_RC	190	57	248	168	84	182	71	179	55	140
CTTTGGTTTTGTAAAA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TCTCAGTATGATTTAG	ref_618_RC	97	39	116	90	44	112	46	98	40	94
ATTGCTTAGGTAGTGG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
AGGCTAATTTACCAAC	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TCCTGATAGTCACCGT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
GTTCAATGCCATTTCA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TATCCTCATGATATCA	alt_618_RC	11	5	7	10	8	15	3	16	7	5
GTTTTGGCTCTCCTGA	ref_618_RC	163	60	187	150	58	136	55	137	56	141
ATGGCTCTTTTTCGCT	ref_618_RC	260	74	296	260	91	222	83	254	77	245
TGTGGATTTCTCGGGC	ref_618_RC	11	7	22	14	4	8	5	13	3	8
CATCGGCTACGCCCTG	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GAAAGGATCGCGGTAA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
AGCACTGCATCTTTGG	ref_618_RC	38	20	43	41	19	37	27	35	13	39
CTTAATTTTTCTAATG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
AGTGATAATGGCCTAC	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TTTCGATTTTTACTTG	ref_618_RC	57	14	64	55	19	64	12	55	15	42
CTGGTGCTCACTGTCA	ref_618_RC	127	22	97	107	29	92	31	87	39	85
CTCACTGTTGGTACAT	ref_618_RC	330	126	379	319	160	294	132	301	124	274
CTCTAAGGTCAGCATG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
ATGGTACAGTAAGGGT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
AACTTCACGACGCGGA	ref_618_RC	284	90	310	270	90	210	87	234	92	224
TATACGTTTCGGCGTA	ref_618_RC	121	51	122	116	43	94	50	98	39	102
CTGCATAGGCTTGGGG	ref_618_RC	97	46	149	141	49	120	41	131	55	105
AGAGATTATGATTCAA	ref_618_RC	0	0	0	0	0	0	0	0	0	0
GATCAAGGCGCCCTTC	ref_618_RC	156	32	171	126	37	115	43	128	58	116
ACTCTACGACGACCAC	ref_618_RC	1	2	2	8	1	3	1	5	1	4
GCGTGGTAGTTGCGCC	ref_618_RC	8	3	19	11	5	18	3	17	5	6
TTCCGTAGCTTTATGG	alt_618_RC	298	93	358	297	102	276	129	276	105	247
CGAGCTAGGCAACCCC	ref_618_RC	8	6	9	12	2	7	2	10	4	2
TTTTTAATTCATCTAG	ref_618_RC	0	0	0	0	0	0	0	0	0	0
GCCTATAGTTCCCGTT	ref_618_RC	132	63	158	145	66	112	55	117	75	105
ATTTGTCCTCTTCCAT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
TGGATAAGATAGGGGT	ref_618_RC	36	11	45	41	18	38	14	34	19	37
CGCCGCAATCAACATA	alt_618_RC	437	189	568	458	167	403	218	428	201	424
CAAGGTTATTATCTGT	ref_618_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTTTTCGTGGTT	ref_618_RC	100	50	162	116	43	118	51	127	41	93
GTCACCACTACATTTT	alt_5927_new	27	64	30	25	65	21	67	21	68	27
ATTTACAATTATTCCC	alt_5927_new	11	18	23	11	21	11	17	7	18	5
TGAGGGGGCATTTGGT	alt_5927_new	23	37	23	13	30	27	41	23	40	17
ACCTGTGCGGCGTTCT	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TGTCAAATTGTTCGGC	alt_5927_new	12	33	14	13	34	18	24	10	27	17
TTCCACAGCAAATGCT	alt_5927_new	4	10	6	2	13	1	6	2	12	3
TGCTCGGGATCCTGGG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TAAGTGATCCTTGTTA	alt_5927_new	22	25	32	24	34	22	35	9	34	20
TTTGAGATCGAAATGT	alt_5927_new	26	70	43	36	59	36	64	27	78	19
ATACACTTTCGGACTA	alt_5927_new	20	35	14	9	35	14	25	16	33	12
GTACCTAGTACGGGCC	alt_5927_new	11	11	16	3	27	10	17	9	16	9
AGAGCCTTTCCCTTAC	alt_5927_new	14	63	22	13	53	24	49	8	58	15
ACATACGATGGTCTGT	alt_5927_new	12	30	30	16	52	29	38	26	38	28
CTAGGTTTGCACGGGG	alt_5927_new	19	53	18	17	38	16	46	10	32	17
TTCATTGTTTTTTTCG	alt_5927_new	75	166	90	86	136	100	188	60	206	82
TTGCGCCTGCAACCCG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
ATCTGATAGCCCGTCT	alt_5927_new	10	35	19	26	29	15	33	17	33	15
GTAGGTATGGTTTCGG	alt_5927_new	43	49	34	26	77	39	77	27	78	28
TATGTGTCCAAAATAG	alt_5927_new	26	49	38	27	65	24	65	26	53	30
CAGTACACGGGTATTG	alt_5927_new	4	34	11	11	28	6	41	11	36	12
CTTAGCAATGACCTGG	alt_5927_new	11	29	18	6	34	14	25	7	23	9
TTGTGTCCGGGGGCAG	alt_5927_new	8	31	7	7	29	6	35	11	27	10
TAAGCCTTGCAGGTTA	alt_5927_new	12	45	21	19	63	15	48	14	52	9
CGTCCTAAATTATGCT	alt_5927_new	4	9	1	2	15	3	6	3	5	5
AACGCTACTACAGATA	ref_5927_new	7	29	11	4	18	3	20	14	23	4
CGCGCCCTGGGTGGTC	alt_5927_new	61	160	81	61	143	68	133	64	159	80
AGCTGCCGTAACGATT	alt_5927_new	20	43	18	14	45	23	39	21	35	25
TGTTATCGACGCCGAG	alt_5927_new	21	49	32	18	51	20	52	14	45	22
GTCCATTGATCATGGG	alt_5927_new	41	98	50	34	90	40	118	39	131	45
TTGATAAAGTCGTTCG	alt_5927_new	17	37	21	23	66	26	60	17	54	14
CCAAACGGGAACCTTA	alt_5927_new	21	18	9	12	19	11	30	11	12	16
TCGAAGCGAGCGCTGT	alt_5927_new	7	18	12	5	21	10	20	11	15	16
TAGATCTACACTTATG	alt_5927_new	33	107	43	41	93	42	101	38	100	40
ACTTGATTTTTTCTTT	alt_5927_new	0	0	0	0	0	0	0	0	0	0
ATTGCGCAGGCCCTTG	alt_5927_new	25	46	21	20	38	27	48	25	59	32
TCTGACTCGATTGCGC	ref_5927_new	17	33	12	12	23	4	18	12	22	5
ACAGGCTAACAGCTGG	alt_5927_new	0	2	2	2	1	1	3	1	4	1
TTTGATTCTTCTCCAG	alt_5927_new	4	2	4	2	2	4	5	1	11	1
TAGACCCGCGATGCCT	alt_5927_new	8	9	5	4	14	4	7	1	11	4
TCAGTAGCGATTATGC	alt_5927_new	2	30	6	4	25	5	22	6	25	2
CTAGATCCACTCGGTC	alt_5927_new	17	39	22	15	53	13	52	25	53	21
TCTTAAGATCACTGGA	alt_5927_new	6	19	7	3	19	2	17	4	17	4
ATTACGTAACTGGTGT	alt_5927_new	4	8	4	7	9	6	9	4	13	1
TCAGTCAGAAACTAGC	alt_5927_new	18	22	17	13	44	16	36	11	45	9
TGAGCATCTAGAACAG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TATTCCTTGGTGTTTT	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TTTCCTCATCACTTAC	alt_5927_new	10	23	11	5	18	8	28	7	27	11
TCACGCTTTCGGTTAA	alt_5927_new	7	21	7	12	32	11	30	18	20	13
TTCGAAGAGGTAGTAA	alt_5927_new	34	74	30	22	41	23	52	13	53	21
CGTTCGCCTCACTGGC	alt_5927_new	0	0	0	0	1	0	0	0	1	0
TGTACCTTATTCCTAC	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TCCCTCCGCAGAACAT	ref_5927_new	17	26	18	23	27	25	37	19	34	10
ACCTGTTGCTGACCTT	alt_5927_new	0	0	0	0	0	0	0	0	0	0
GTCTTCGGGATAGTTG	alt_5927_new	9	25	17	17	30	14	16	8	26	7
TATCGCTCTTTCAGTT	alt_5927_new	42	104	55	64	123	62	116	45	148	36
GTTTTATTTTTCCTCT	alt_5927_new	17	21	13	10	22	25	27	9	32	14
TACGGTACTCGCCTGG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
AGTTATGGCTTAGAGG	alt_5927_new	15	37	13	16	28	12	28	13	30	16
TTTATAAACGCGGAAT	alt_5927_new	72	126	69	54	94	38	120	50	123	49
AGTGCAAAACGATTAT	alt_5927_new	4	13	3	7	20	7	24	6	28	6
CGGCCCTTGAGTTGTT	alt_5927_new	20	29	13	7	26	15	26	12	27	15
GATTCTGTAATCACGG	alt_5927_new	6	24	12	11	16	11	25	7	27	11
TCAACAATGGCGCACG	alt_5927_new	13	36	25	18	37	19	42	28	43	14
TTAGAAACTCCTAGGG	alt_5927_new	10	32	22	16	41	15	45	18	44	9
GAAATTTCTTTCAGTC	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TGTGCATCCCAGGTCC	alt_5927_new	43	70	30	41	57	21	70	21	66	28
GTAATTGCCGGACAGA	alt_5927_new	32	58	25	21	71	14	58	24	56	24
GCGACAAGTGCTGGCG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
CGCAGCCGATTCACGA	alt_5927_new	0	10	1	1	10	0	4	2	10	0
GATCTTATTTAATTCC	alt_5927_new	52	102	66	44	96	55	91	35	130	37
GTTGATCTGTAAGAAC	alt_5927_new	10	40	15	13	31	15	27	13	31	12
CGATCAAAGTCATGGG	alt_5927_new	3	2	2	3	3	2	3	6	6	4
GTCTAATCTTCTGCCA	alt_5927_new	14	21	20	13	17	13	29	13	25	12
ACTAACCTTTTTCGAC	alt_5927_new	0	0	0	0	0	0	0	0	0	0
GGTAAAACAACGATGG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
ATCCTACCTTCAACCT	alt_5927_new	2	8	2	1	7	3	9	3	9	3
AATTCCGGCTTTTTTT	alt_5927_new	18	39	27	15	59	34	43	30	51	16
CCCACGATGTACCAGT	alt_5927_new	2	15	10	5	12	2	17	5	14	3
CAGACAATCGTAGCAG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
CTGTGATTACCTGGCC	alt_5927_new	40	77	46	33	105	20	101	35	88	29
GTACGAGGTTTTATAC	alt_5927_new	95	168	98	88	227	83	239	86	224	75
TATTGTCTTAGTCCAT	alt_5927_new	3	7	1	0	4	1	6	5	9	4
CCCACTCCATTAGTGG	alt_5927_new	2	6	3	5	12	2	12	4	16	2
GTATCGCCGCGAAAAT	alt_5927_new	9	31	24	11	32	15	36	15	37	7
ATGGGCTATATCCATC	alt_5927_new	0	0	0	0	0	0	0	0	0	0
AATTGACCAGTCACAG	alt_5927_new	30	71	28	36	64	25	53	24	71	32
GTTTATTGCAAGCTAC	alt_5927_new	39	95	57	43	91	42	95	41	91	51
GATTACTAAGGATCGT	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TGGTAAGTCTTTTGAG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
GGTCTGTCTAACGCTG	alt_5927_new	41	110	48	42	99	35	111	36	116	34
GGTACACCAACCATTT	alt_5927_new	12	17	13	12	30	13	22	3	23	6
TTAGAAGCTAGGCAGT	alt_5927_new	15	29	13	10	17	11	16	7	23	6
ACTTGCAGTGGCCTAC	alt_5927_new	7	21	6	10	19	6	20	12	28	5
ATTCAGTTGAGTCAGC	ref_5927_new	74	181	100	91	186	72	162	85	188	69
GATTACGCCAGCTTCC	alt_5927_new	10	16	15	9	23	9	17	9	29	4
TGAGACCTACATCGTT	alt_5927_new	11	29	25	17	38	16	22	10	38	9
TGACATTTCGCGCCCG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
ATAGTCGGTTGAGGGT	alt_5927_new	9	30	19	13	27	8	31	12	21	9
CCTTGAATCCGGGCTG	ref_5927_new	38	87	29	33	75	33	70	27	91	29
ACGAAGGTTACGTCGA	alt_5927_new	0	0	0	0	0	0	0	0	0	0
TTCAATTAGATGTTTA	alt_5927_new	20	50	30	23	59	29	53	34	66	22
CTCTGAGGAAAGATTT	alt_5927_new	16	19	18	6	25	8	28	16	28	11
GCTTTTATGTATCACA	ref_5927_new	58	208	100	98	185	84	207	80	225	76
GCTCAGTCGCTGAAAG	alt_5927_new	24	50	31	18	50	17	44	21	73	24
TAAACTTTCTCTCTCG	alt_5927_new	2	9	5	4	9	5	8	4	7	1
ATGAAACGAGACCTAA	alt_5927_new	11	16	6	10	17	3	20	5	15	7
AGATTTTCGAGGGTTT	alt_5927_new	0	0	0	0	0	0	0	0	0	0
AAACGTGCTACCTTAG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
GGCCTCTACTTTGGTA	alt_5927_new	22	75	30	24	81	25	91	25	71	21
TACGACCGAGGCAGTG	alt_5927_new	22	47	32	24	42	22	60	32	43	17
TAAAGGATAATGCGGA	alt_5927_new	17	27	8	11	22	10	16	11	17	9
TATAAGCAAGTACAAG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
GCTAGTCTGAACCCTG	alt_5927_new	4	23	19	7	26	14	20	8	23	9
TTAGGTAGAGCTCCGG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
ATACCTGAGACACCCG	alt_5927_new	28	68	29	24	68	27	79	39	75	33
ATCTTTCTACATAATT	ref_5927_new	110	229	121	97	238	93	273	77	215	95
GTCATAAACGGGACCT	alt_5927_new	149	383	209	147	326	161	371	138	420	132
TATAAAGCTTACAGCT	alt_5927_new	7	18	5	4	14	8	21	6	24	8
TGTAACTACTTTAGCT	alt_5927_new	48	140	43	39	100	37	121	47	135	39
GTAGGACGCTCCAGAG	alt_5927_new	0	0	0	0	0	0	0	0	0	0
CACTACTTATAAGTAG	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TATTGTTGGTTCGATT	alt_5927_new	32	83	28	37	71	29	87	25	91	21
TGCCGACCTGGAAGCA	alt_5927_new	1	20	9	4	13	5	5	6	13	3
GCTTATATAGTTCATT	alt_5927_new	9	22	5	4	21	5	21	8	20	11
TACTTCACATGCTGTG	alt_5927_new	3	8	2	2	15	3	3	4	5	5
CGTCGCCTTGTCCTAA	alt_5927_new	39	70	37	46	82	39	74	33	68	40
GGTATATTCTACACCG	alt_5927_new	5	3	1	1	3	1	5	2	3	3
TTCAAGTCAGTTCGTA	alt_5927_new	38	89	24	34	82	40	82	32	92	25
GCGTAGGTTCTATTGT	ref_1851_reverse	32	37	44	34	41	29	41	25	36	34
CATAAACGTTTCCATC	ref_1851_reverse	67	52	83	62	56	66	51	49	74	61
GTTATTAAGGGCCCGC	ref_1851_reverse	73	92	123	54	73	69	76	79	94	67
ACTTTTATTTACTGTA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTCCTTGTATTTC	ref_1851_reverse	5	15	11	7	10	6	11	6	10	9
AAGGTGAGACACAATG	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
TGTCATCCCATTAAAT	ref_1851_reverse	82	75	88	87	69	75	89	66	91	86
CTTCACTTTAGATGAT	ref_1851_reverse	100	106	128	95	99	105	121	86	125	86
ACGCAACCGTAAGCGT	ref_1851_reverse	56	67	90	67	56	68	69	66	63	66
CCCTACTCTGGATGTC	ref_1851_reverse	7	4	6	1	7	5	6	7	8	8
TGCGGACTTTCCGGTC	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
ATCACAATCACTGACA	ref_1851_reverse	15	22	32	16	22	17	25	18	27	15
TCTGGTCGTATGTCAA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GATGCTGATACCTGGA	ref_1851_reverse	20	21	25	15	21	18	19	15	23	15
GCCGTACATGATTCGC	ref_1851_reverse	0	0	0	0	0	1	2	0	1	1
CGGTCACTGCCCCCTT	ref_1851_reverse	48	79	63	48	75	47	79	51	79	46
AGGTTCAAGTTTACTT	ref_1851_reverse	56	71	67	60	61	38	69	55	55	52
AAACGGTTTTTGCGTG	ref_1851_reverse	18	26	20	18	20	27	22	18	30	25
TGCAGAGCTTATGCAA	ref_1851_reverse	16	22	25	16	13	17	29	13	27	19
CTACACTGGCACAATA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
TATACCAAGGCTTAAC	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCGATCCCCCATT	ref_1851_reverse	42	42	60	52	56	49	60	38	62	34
GTCGTAATTGCCATTC	ref_1851_reverse	13	11	24	15	16	23	20	28	17	11
GCTATTTCATATGGCG	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
CATCCTGCTGCTATTT	ref_1851_reverse	9	17	18	14	19	21	13	14	16	16
TTCATTATACCCTTCT	ref_1851_reverse	17	15	31	15	20	23	12	16	20	19
TAAAACCCGGCTGATC	ref_1851_reverse	10	12	13	8	18	13	14	15	16	10
AGATAGTGGTCTTCTT	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCAATTGCTTATC	ref_1851_reverse	5	3	5	12	10	3	12	7	5	4
TCGCATTTTTTCATTT	ref_1851_reverse	5	5	8	6	4	8	2	5	6	9
TTTAATACGAGTTATG	ref_1851_reverse	10	16	23	15	17	10	24	7	16	15
CTGCTAGTATTGATTG	ref_1851_reverse	2	5	7	7	9	4	3	9	4	7
TTTTAAGTCCATCGTC	ref_1851_reverse	12	7	10	10	11	12	11	12	18	7
CAAGCTTGCGCTGGGT	ref_1851_reverse	1	2	7	3	4	9	2	3	3	6
AGTGACCTTGGAATTT	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
TGGGACTTGGCCCAAC	ref_1851_reverse	19	12	11	11	15	13	10	12	9	13
CGACAGGCGAATGAGA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GGTAACACTTTTTCGG	ref_1851_reverse	161	147	199	164	173	176	170	167	170	136
GGCTTCATCAGAACAC	ref_1851_reverse	4	17	4	8	4	10	7	11	11	11
TTACCCAATCCGTTTG	ref_1851_reverse	0	7	8	6	3	2	4	3	8	2
TCGAGTGAGTTGGCTG	ref_1851_reverse	13	11	16	11	10	11	9	10	12	13
TAGGATCTCGGTTTGC	ref_1851_reverse	1	0	0	0	1	0	1	0	1	0
TCGGTCATTTCCAGGT	ref_1851_reverse	6	11	8	3	20	2	24	4	15	10
CCTCCCTTTTCCTTAA	ref_1851_reverse	6	6	11	10	7	11	12	7	10	5
TAACTGGTGAAGGACA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGGGCGCGTACAG	ref_1851_reverse	8	4	14	2	7	1	4	6	8	12
CTTACTGCTTTTGCTT	ref_1851_reverse	173	189	142	133	179	134	167	135	188	116
CTTCTTCGTCTAATCC	ref_1851_reverse	12	20	25	17	27	24	11	26	22	20
TTAGCTCCCAGACGCC	ref_1851_reverse	6	8	10	11	10	12	7	12	11	10
TCACGGGGCTACCCGA	ref_1851_reverse	13	20	17	18	28	20	20	8	17	19
TGACTCTGTAGCGTCC	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
ATAGGCCTTGTAGTTG	ref_1851_reverse	13	9	21	15	13	9	14	8	14	11
CCCCTGGTAGGAACAT	ref_1851_reverse	2	12	1	2	16	1	12	2	14	1
GTTCCGGCCTTTACGC	ref_1851_reverse	10	11	10	10	11	15	9	10	16	3
TTTCGAGTTGACGGGT	ref_1851_reverse	28	38	40	41	39	37	39	27	40	30
GTCGGGCTGGTCTATG	ref_1851_reverse	77	63	106	86	78	100	89	76	83	71
TAGCCTTCGTCTAGGC	ref_1851_reverse	58	63	62	72	73	59	65	55	65	40
TGGTCCTTGGTGATAA	ref_1851_reverse	8	11	24	18	12	20	15	18	16	16
GTTGTCCTGAGCGCGC	ref_1851_reverse	15	15	30	14	20	13	25	13	23	20
GTGGGGGTGCGCCGTT	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTCTGCGCCGGTA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTCTCCAGTGAAA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGGTTTGAAGCT	ref_1851_reverse	89	76	77	74	60	78	90	70	76	61
TACTCCCTCACGATTA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTCGACTGGCGTT	ref_1851_reverse	144	196	213	165	164	159	167	185	182	153
CACTCCTTTATATACT	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GATCCGTCATATGCCA	ref_1851_reverse	46	47	67	49	47	53	54	54	59	39
TTACGATCGGTCCGGG	ref_1851_reverse	35	27	43	42	36	32	42	36	28	42
TTGACTAGCCTGCCGT	ref_1851_reverse	28	21	40	16	33	31	30	21	29	22
GAATTTACTCTCTCCA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTACTCCCGTTCA	ref_1851_reverse	41	112	55	48	139	41	130	42	111	48
GGTTATAAGAAACGAC	ref_1851_reverse	34	34	35	39	36	33	20	29	34	33
GTTCGCAATTCCCCCT	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCCCGCCTCAAGC	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
AAATATTTTAGTCAGT	ref_1851_reverse	13	21	22	17	17	18	20	15	19	13
TCCAACATATCGATTT	ref_1851_reverse	106	104	114	96	79	87	91	86	116	92
GACATAGCCAGATTAA	ref_1851_reverse	165	146	177	168	133	162	153	163	156	184
ATTAGACGGCGTTCCG	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GAATGTGCGAAAGCTA	ref_1851_reverse	82	109	104	92	100	85	99	80	98	67
TACTGTTCTAGTATCA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAGTGCATGCCGC	ref_1851_reverse	25	28	25	27	23	34	17	30	18	22
GCTCTTAAACATTCCT	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
ACCATATAGGGTGTCG	ref_1851_reverse	40	48	48	53	39	37	47	30	45	27
CCCATTGATTCTCAGC	ref_1851_reverse	21	14	22	19	16	12	21	18	25	12
TGCTTAAGCAGAGTAA	ref_1851_reverse	8	6	10	6	6	9	3	10	4	7
CGGCAAAAAAATACCG	ref_1851_reverse	15	9	13	13	19	17	11	6	14	14
GTACCTGATTTCTTGG	ref_1851_reverse	54	51	80	37	70	59	65	67	93	78
TATTTGGAATTCGGAA	ref_1851_reverse	5	9	13	8	6	7	8	11	18	13
TAATCCAGATGACTGC	ref_1851_reverse	15	14	18	22	18	17	17	18	17	13
GCACCGCCCATCACCA	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTCAATAAGGGAG	ref_1851_reverse	34	27	34	40	28	41	22	27	47	21
CGGTACATTTATCCGT	ref_1851_reverse	33	44	33	42	40	43	38	39	29	39
CTTACAACAATTTTCT	ref_1851_reverse	14	16	18	17	29	18	16	20	17	12
ACGTTAGAGGATAGCC	ref_1851_reverse	97	125	151	123	138	116	121	95	120	99
AAGGGGAGTCCTATTC	alt_1851_reverse	7	10	10	12	8	6	11	4	4	10
CGTTCTCGTATCGTTG	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGTCATGCGTGTT	ref_1851_reverse	7	69	5	3	50	5	89	5	57	6
GTGTTGGCTTTCCTCG	ref_1851_reverse	0	0	0	0	0	0	0	0	0	0
ACACGCCCTCGGTGCT	ref_1851_reverse	37	71	40	25	63	27	82	26	56	24
CTCTTCTGACTCTCTC	ref_1851_reverse	55	52	70	48	55	54	62	59	76	47
CTGGATATGACGGTCC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
ACCCATGTCGTCCGTT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
GGAGACTCCCTACATA	alt_3247_fdr	174	21	203	188	17	193	20	159	26	155
TCTTGCATAAGATTGG	alt_3247_fdr	678	81	788	711	79	653	78	619	66	551
GCATGCTTTTCTTTGA	alt_3247_fdr	238	28	359	265	27	264	33	270	30	243
TACGATCTTTCGTTCA	alt_3247_fdr	483	53	622	559	53	518	58	442	76	437
TTCACGGGCCTCGTTT	alt_3247_fdr	28	5	37	35	4	27	2	33	7	30
ATCTGTTTGGTGGCTC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TATTTTGTTTGATGTA	alt_3247_fdr	239	31	259	301	39	233	39	206	27	212
TCTCGATACCCACGAA	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTTCTAGAACAGT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
ACTCGCTAGTATTTCC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCTATGGCTGGTC	alt_3247_fdr	36	11	31	25	18	22	9	27	8	23
TAGGATTTGGATTGCA	alt_3247_fdr	126	17	131	134	10	146	12	132	10	102
ATTGGTCTATTTCTTA	ref_3247_fdr	189	18	253	206	20	206	14	191	14	153
AGGAGCTAGTCTCCCT	alt_3247_fdr	231	28	277	224	32	190	38	213	30	196
CTGCTGACGTGGCGTC	alt_3247_fdr	100	14	147	123	18	123	19	130	15	99
AGGCCGCTGTCCGCAC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTAACTTACTGGG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTGTAGTCATTAT	alt_3247_fdr	253	35	310	304	42	280	40	261	23	245
CAGTGCTCTTCTTCTT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CCATGTCTTAAAGAAT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAGCTGCTACATC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCTTTTGTGTTCC	alt_3247_fdr	842	87	1049	989	94	879	114	831	83	755
TACCACACAGAGATAT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGAAACCTCAGCG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCCGTGCTTGTCA	alt_3247_fdr	153	20	180	158	20	146	21	146	23	144
TTGGCTCCTCACCAGG	alt_3247_fdr	619	70	770	671	75	672	77	640	66	615
TAAGTGATTACTCATG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AATCGTTCTGGAGTCA	alt_3247_fdr	308	41	385	360	24	294	41	338	37	294
ATTCAGGCCTATGGTT	alt_3247_fdr	36	7	55	40	5	30	7	44	3	39
ATTTCCGGCTGCTTCG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CTCATCCGCAATTTGT	alt_3247_fdr	18	1	19	27	3	20	2	20	5	16
GTTCTGTTGTTCTGGG	alt_3247_fdr	87	9	109	98	8	102	14	85	15	78
TGAAAGGTTGGTGATA	alt_3247_fdr	228	31	263	257	21	249	31	204	17	199
TAAATTTGGTATACTC	alt_3247_fdr	99	13	143	130	12	115	11	103	10	93
TTATCAAAGTAGTCCA	alt_3247_fdr	94	17	144	98	9	95	10	62	17	89
TATCGCTGCTTGATTC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
ACACGTGTTTATCATG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATTGTATCATTG	alt_3247_fdr	258	20	323	287	26	234	28	240	14	248
GTCAATTGCTCGCTTC	alt_3247_fdr	123	7	155	116	14	118	7	110	10	96
GTTGCATTACACTCAG	alt_3247_fdr	293	30	340	272	43	261	36	288	35	264
TCTGGCATTGACTCCC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AACATGTATTAAGGGA	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAAGTGGGATCAT	alt_3247_fdr	74	13	79	76	10	71	4	71	9	73
GGTTATTGTTAGCACA	alt_3247_fdr	353	37	436	413	38	318	46	346	33	286
CCGTAGGAGTTACTGG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AAAATTTATAAGGTGG	alt_3247_fdr	29	2	34	26	2	36	2	42	2	29
GATGCTGGCCTCAGAT	alt_3247_fdr	114	10	146	126	18	108	12	127	13	119
GGTTTTGATACCGCAA	alt_3247_fdr	355	38	428	360	47	396	37	403	47	338
TGGGCACATGGGGCTG	alt_3247_fdr	305	37	423	375	37	321	32	314	42	294
CCCGCTAGTAATAGTT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
GATAGTACACTAGCAG	alt_3247_fdr	19	0	16	13	1	8	2	1	1	8
GGAACCTTCCCTTGCT	alt_3247_fdr	143	26	214	161	13	152	14	158	14	130
CCTAGTTTTCCTAGCG	alt_3247_fdr	151	28	192	163	31	137	40	152	27	119
CTGTGCCGATTATTCG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCACCGGCTGCCA	alt_3247_fdr	359	52	554	447	54	419	52	389	55	348
GAGCTTCTTTGCTTTA	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TCATAAGTGGGTATTT	alt_3247_fdr	380	46	497	430	44	406	41	376	42	370
GTTAGTGTGCCGTGAT	alt_3247_fdr	177	12	214	168	21	179	37	172	30	148
AGTCCGTCGTCCCTTT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTCTGATCTGTCC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AGAAGCTAGTAAATGG	alt_3247_fdr	572	59	731	593	79	583	84	606	69	521
GGCTAGAAGCTCAACG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCTTTTTAGCTTA	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTCGTGACCTGCG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCAATGGGATTGC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TTAAACAATTACGTGA	alt_3247_fdr	94	9	85	87	7	87	10	77	9	72
ATCGTAGGGAATAGAT	alt_3247_fdr	107	17	128	99	6	90	9	126	14	94
TGTTCTTCGCAACTGG	alt_3247_fdr	27	1	27	14	1	14	1	11	2	8
CGGTTGTGATGTCTTG	alt_3247_fdr	92	14	120	124	12	117	8	103	10	96
TTCGGTCTAGTATTCG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCATTTCGCGGCC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCTATTCCTCGT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGTTGTTGACCTC	alt_3247_fdr	384	30	458	368	40	327	40	335	36	334
CAGGGGAGCACGCATC	alt_3247_fdr	328	43	416	470	45	325	40	322	53	299
CGGATGAGTTTTTCTT	alt_3247_fdr	168	21	213	153	23	169	16	137	18	171
TTTTAGCTGTCCGGCT	alt_3247_fdr	81	13	106	94	4	96	9	69	8	80
GATTATATCTTTCTGT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AACAAGGGATCGATGT	alt_3247_fdr	526	62	696	628	61	516	71	475	57	466
TGAGACGCCCGCTTGT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CTATCTCATGCTGGCC	alt_3247_fdr	101	15	140	105	20	108	22	94	23	81
TATGCTATAACATTGC	alt_3247_fdr	163	22	216	207	21	152	16	174	19	135
GATGGAAGGGAGTACT	alt_3247_fdr	593	69	752	629	56	588	66	565	75	506
CGCCTAGATGTATATC	alt_3247_fdr	9	0	15	16	1	14	0	15	2	9
GGTGCATTCCATTCAT	ref_3247_fdr	667	90	995	766	90	719	86	733	95	678
TCTTTCAACAGCGCCC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
ATATCGGCGACAACGG	alt_3247_fdr	91	8	103	111	5	94	6	82	9	83
AGGCCTTGGCTCGAAC	alt_3247_fdr	865	91	1154	871	67	807	95	831	112	726
CACCGTGTTTCCCCGC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CTGACTACCTAGATAG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TATGTCTCAGTCATTT	alt_3247_fdr	60	3	67	65	9	51	11	68	2	40
ATCGATCTTTACCATT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AGTATAACATAACCTA	alt_3247_fdr	441	37	485	414	41	421	31	400	39	374
ACAAGTTCCTGTGCCT	alt_3247_fdr	215	28	263	246	27	193	33	201	26	196
TTTTCACCGATTTGGG	alt_3247_fdr	106	21	171	105	10	113	9	117	16	104
GGATTCTTCACCGCGG	alt_3247_fdr	62	8	62	73	6	53	14	76	12	58
CCTGCAACACTCACCC	alt_3247_fdr	13	1	16	15	4	14	2	18	5	8
GGGGTTCTTCAGGTAT	alt_3247_fdr	672	73	793	715	72	655	76	735	74	552
GTATTTTCTGCCGTTT	alt_3247_fdr	60	6	68	68	5	48	5	48	4	40
ATCAAGGTCTACTGCA	alt_3247_fdr	78	6	79	62	11	58	6	69	8	79
TTCGGTTTATGTTGTT	alt_3247_fdr	7	2	27	19	1	15	3	12	0	20
GTGTACCTCGTCCACC	alt_3247_fdr	153	18	185	173	25	150	25	138	23	157
GGATATTGCGTGCAGG	alt_3247_fdr	456	58	589	528	50	482	42	447	43	425
TGTCCGGGAATATTAA	alt_3247_fdr	158	16	187	173	32	185	30	166	18	156
CCCACGGCGTTCATAG	alt_3247_fdr	83	12	84	97	18	87	13	85	11	72
ACCAACCATTAGATAG	alt_3247_fdr	312	224	482	421	252	339	236	368	248	350
CTAGGGCGTGCATCTT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AAGAGCTAAATGGTTC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGAATAGCTTGTA	alt_3247_fdr	442	49	583	454	56	428	55	449	48	396
TTTGGCCTTTCTCTAC	alt_3247_fdr	333	35	416	370	35	279	37	336	23	311
CCTAGTACGACGAGCA	alt_3247_fdr	21	3	46	30	1	34	0	17	1	25
GCCTCTTCCCCAAATC	alt_3247_fdr	440	33	573	495	44	441	48	469	45	384
ACCGCCCAATTGTCCC	alt_3247_fdr	98	7	122	122	20	102	14	76	18	69
TATTAACAGGTGATCC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
GCACAGTTTAGAAGCG	alt_3247_fdr	206	21	222	203	24	221	20	184	33	188
CAATAGTTTTGTTCCC	alt_3247_fdr	576	70	738	638	59	584	75	543	61	506
GTTTAACGCTTTGTCG	alt_3247_fdr	132	11	174	104	7	114	8	125	14	90
CCTCTTTATTCCGCGC	alt_3247_fdr	24	3	51	42	1	25	4	35	2	18
CTAATCAGCAGCACAG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AATACAATTTTTTCCA	alt_3247_fdr	260	30	321	311	24	292	33	257	23	233
CTGCCTGAACAGACTG	alt_3247_fdr	254	23	329	287	34	280	33	299	28	266
ATTACTTTCTTTAGGC	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTGGCTCCCATA	alt_3247_fdr	34	4	47	33	3	29	3	35	3	24
GGGATGAAAGGCTGGC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
ATATCACAGGTGCCCT	alt_3247_fdr	1471	130	1658	1558	181	1275	155	1415	177	1338
GGTCCAGTATTCCTAG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
AGGTAGCCACACTTAC	alt_3247_fdr	390	32	472	389	40	368	37	357	37	345
ATCGTTAGTTCTGGGT	alt_3247_fdr	202	31	255	208	28	203	21	170	34	199
CAATTCCAGTCGAGCT	alt_3247_fdr	13	6	7	11	3	5	7	6	3	7
CCAGTCCGCGTTGGCA	alt_3247_fdr	305	43	336	261	56	281	50	268	59	214
TTAGGAGCGCCCCATA	alt_3247_fdr	2326	210	3032	2709	255	2364	308	2362	248	2119
TCCGGCGCTCTGTACG	alt_3247_fdr	17	1	12	14	2	8	3	17	5	17
CGGCTAGACATATTGT	alt_3247_fdr	61	7	60	51	4	52	4	38	10	39
TATTGCATTTAGTGTC	alt_3247_fdr	719	78	895	793	90	703	83	651	105	675
TGTACGTCGTCATAGG	ref_3247_fdr	89	10	106	92	19	75	8	89	13	83
ACGTCCGCTCGTCGAC	alt_3247_fdr	1061	141	1175	948	144	852	161	963	165	873
GCTTAAAGCCTGGCAC	alt_3247_fdr	353	47	414	413	48	366	38	351	53	353
CCTACAAACAGGGAGC	alt_3247_fdr	266	32	353	364	44	263	41	277	23	262
AGCATGTCGGCATAAC	alt_3247_fdr	129	12	146	139	17	128	9	99	19	136
TGTTTACAGGTTTAAG	alt_3247_fdr	381	51	542	468	63	487	45	425	48	390
GTATTTTAATATAACT	alt_3247_fdr	498	27	554	496	35	459	50	461	41	414
TCGCTACCCTCCACTG	alt_3247_fdr	848	84	1134	993	119	922	103	936	95	822
TCATCAGTGGTGTATC	alt_3247_fdr	1330	157	1633	1415	136	1262	157	1214	187	1150
AAGCACTTGTGCATAC	alt_3247_fdr	455	52	646	499	53	457	59	459	62	435
GAGTGCGCATCTGGCC	alt_3247_fdr	816	69	922	903	73	750	108	796	98	685
TGCACGTGGGAAATGG	alt_3247_fdr	140	16	217	176	15	148	12	137	17	129
GGTGCTCCCTAGCTTT	alt_3247_fdr	105	8	103	82	12	82	9	85	12	65
GTCGTTCTTAAGGAGT	alt_3247_fdr	212	34	244	246	26	165	16	201	22	184
TTGAGGCCGTGTAGTA	alt_3247_fdr	8	0	11	12	1	10	0	9	1	5
TTTACCGGTACCACAG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTTTTTTGGTTCG	alt_3247_fdr	184	18	178	153	10	134	8	178	23	140
CTCCTGCCGCGCTTTC	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTTCGTAACAACT	alt_3247_fdr	645	98	807	682	57	656	88	635	91	571
GACCCACTCGGAAGCC	alt_3247_fdr	261	19	307	294	28	271	32	285	26	281
CTGAGGTTCTACCTAC	alt_3247_fdr	40	22	20	51	20	24	15	23	16	40
GCCTCGTTCCGTATCT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTGCCGGGGTTTC	alt_3247_fdr	331	31	397	360	40	276	41	253	45	280
GTCGTAAGGCTAGCGT	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TGGGACACCACCCGCT	alt_3247_fdr	11	1	9	16	0	4	0	8	3	12
ATGGTGGCACATGCGC	alt_3247_fdr	251	20	248	214	19	229	24	190	28	217
CGATTCAGTATATGAC	ref_3247_fdr	125	18	148	158	28	149	27	141	29	109
TGGCGGTATTAAATAG	alt_3247_fdr	246	32	311	268	23	235	27	200	26	230
TATCATTCGAGTGGTA	ref_3247_fdr	193	31	239	231	31	187	40	211	44	207
TACAACTTTGATGTCG	ref_3247_fdr	230	28	269	240	36	230	33	238	31	184
GTGTCAGGCCGTTAGA	alt_3247_fdr	111	18	130	123	10	86	10	122	6	95
GGTGACAACTCCCCGG	alt_3247_fdr	0	0	0	0	0	0	0	0	0	0
TATACAGAAACGTCCC	alt_3247_fdr	265	28	312	270	35	245	28	267	26	254
TTTTCATGCAATATCC	ref_449_missing	28	25	16	9	18	23	16	12	19	15
ATTCACACAAGGCCTG	ref_449_missing	0	0	0	0	0	0	0	0	0	0
CCTAGTACCATATTGC	ref_449_missing	9	14	11	14	21	10	22	7	27	12
TGCTGATTGCGCGCCT	ref_449_missing	35	58	43	44	40	29	61	41	67	36
TCCGTTCGTGTCGCTG	ref_449_missing	18	33	25	15	22	22	26	17	23	22
GATTTATATACGCTTC	ref_449_missing	22	10	20	8	11	8	12	7	20	4
GCTTTTATCCTTCGAC	ref_449_missing	17	16	14	10	11	18	16	13	13	14
TCAGGGCGCCCGAATG	ref_449_missing	8	14	11	7	17	19	4	9	16	13
GTCCGTCCAGCCAGGG	ref_449_missing	15	31	28	19	24	28	30	18	22	17
GACTCGTTCGGTATGC	ref_449_missing	12	23	15	15	14	12	13	8	19	13
GATATTCTCTGCTAAA	ref_449_missing	0	0	0	0	0	0	0	0	0	0
TATCACCTACTTTCCC	ref_449_missing	93	109	121	100	143	74	126	101	140	89
TTGGGCGATGTTTCAC	ref_449_missing	0	0	0	0	0	0	0	0	0	0
GCGTGAACGTCCGCCG	ref_449_missing	0	0	0	0	0	0	0	0	0	0
TAATCATTAAAGTATA	ref_449_missing	0	0	0	0	0	0	0	0	0	0
CTCAGGTCGATCCTTC	ref_449_missing	0	0	0	0	0	0	0	0	0	0
TGCTTGCGACATTTTT	ref_449_missing	15	11	16	10	12	7	9	7	13	3
CGGTGCAATCGCGGGT	ref_449_missing	36	34	58	31	41	38	42	34	49	29
GTATATGTATATTTTC	ref_449_missing	0	0	0	0	0	0	0	0	0	0
TGTAACAAAATCATTT	ref_449_missing	5	7	6	3	3	3	4	3	3	0
TGACGCCACCGAGGCG	ref_449_missing	3	3	5	1	5	4	3	2	4	3
CCGCTCTGCTTTAGTG	ref_449_missing	6	22	6	6	21	2	16	4	9	3
GTATCACTTAACTTAC	ref_449_missing	9	22	23	11	12	14	23	18	15	6
TTCTTTACGCACTGTG	ref_449_missing	2	3	7	5	5	2	8	6	2	6
CTCTGTGGTTGTGGCG	ref_449_missing	4	5	8	3	8	6	5	4	5	4
ATCAATTGTTTCGCAT	ref_449_missing	7	7	9	8	2	1	4	6	4	3
GCACTAACCCTCTTCA	ref_449_missing	30	42	40	39	67	22	69	33	51	21
GAACTAATTATTTGAC	alt_449_missing	51	74	53	55	79	46	67	53	92	53
GGTACCTTAAATTCTG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTTATATCTACTTGTC	alt_4925_fdr	62	47	50	39	48	62	68	53	57	41
TTTTTTACCTTACGAG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TACTTTACAATATGTC	alt_4925_fdr	5	8	5	7	7	5	9	6	5	6
GTCGCTGTATCGGCGG	alt_4925_fdr	8	12	17	11	10	4	9	3	9	8
CCAGTAGCTTAGCTAT	alt_4925_fdr	28	111	39	37	121	47	120	43	125	30
CTGTGTCTTATGGTAG	alt_4925_fdr	47	74	54	59	69	72	82	46	64	55
TTGCGTACTCAGTGGT	alt_4925_fdr	19	19	25	16	25	28	25	22	19	19
TGTCAAAAGCGTAAAG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTTAACAAATCTT	alt_4925_fdr	8	8	15	10	9	19	9	10	14	13
GGTAACAGTAGAGCGC	alt_4925_fdr	23	17	29	21	10	22	15	13	27	20
ACTTAACCGATCCGGT	alt_4925_fdr	36	33	48	30	44	41	34	42	42	31
CGGTTCCGGTGCCGAG	alt_4925_fdr	38	47	40	47	34	45	37	29	27	46
CAATAAACGGCAGCAT	alt_4925_fdr	27	16	19	31	18	19	29	28	17	20
TGCACGCGCTTTCACC	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTGTCGGGGGTA	alt_4925_fdr	22	20	27	17	17	26	16	25	18	14
GTCACCCGCCTTGGAT	alt_4925_fdr	34	37	44	31	29	24	45	30	37	39
GGGTAATTATCACGCA	alt_4925_fdr	44	39	64	39	33	46	50	37	58	40
CTGCTCGGCTGAGAGT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGCATTTATTTAA	alt_4925_fdr	65	68	64	69	57	50	54	70	79	60
AATCGATATGCTTCAG	alt_4925_fdr	43	37	63	37	25	57	52	34	52	42
TTTCAGGTCTTGTTTT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
ATATACAACAAATTCT	alt_4925_fdr	35	24	27	33	34	31	28	37	46	23
TGCCTTCTGCCTCATT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TATCCTGCGTTTTTCA	alt_4925_fdr	25	23	36	29	40	43	21	31	20	20
TTTCTAGGCGGCAGCA	alt_4925_fdr	58	55	54	48	35	48	55	34	45	50
AGGTTGCTGTAGCTTA	alt_4925_fdr	62	59	78	72	58	48	42	72	56	63
GCTGCTAGTCCCCTGA	alt_4925_fdr	3	2	5	4	3	8	6	4	1	5
CTCTTCGAATCGTTCC	alt_4925_fdr	140	137	201	165	140	157	126	139	142	163
ATTTTCGAACGTGGTG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
AGCCATAGAATCTAGA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCAACAATTGTGT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
GGGGCCAATTATTAAA	alt_4925_fdr	54	40	40	53	57	53	45	46	62	59
GACTGCGATAGCTAAC	alt_4925_fdr	126	104	145	94	106	116	93	113	116	123
TACTGTTTGTCTCTTG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTACCCCAGCGCTTAA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCTCGGCCATGG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGCTCTACGCTCA	alt_4925_fdr	36	16	26	14	13	19	21	18	14	26
ATCCTGGGTTGTTTCT	alt_4925_fdr	36	36	49	48	45	38	36	42	39	40
GCGCCACGTTAGTGTT	alt_4925_fdr	18	8	15	17	11	13	10	16	17	15
GATCCCTCGACGGCAT	alt_4925_fdr	6	5	9	0	6	3	3	1	0	5
CCCAGGCTGATTCCCA	alt_4925_fdr	409	351	528	400	319	401	360	364	380	394
GGCCGTAACATCGCTC	alt_4925_fdr	47	41	53	46	37	34	42	45	49	42
GCCCACTGTATCACCA	alt_4925_fdr	118	112	130	138	116	108	102	122	100	93
GGCCCTTTGCGCTTGT	alt_4925_fdr	19	30	35	27	24	20	11	27	18	22
CTAAAACTGGCCCATG	alt_4925_fdr	21	37	25	28	34	26	20	19	29	27
TTAAACTCGTGGAAAT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
GATTATTTCAGCTGTC	alt_4925_fdr	23	13	20	15	19	16	19	16	17	9
ATCCTATTCGTTTGTC	alt_4925_fdr	68	69	78	58	61	58	67	65	92	64
ACTTTCCTACCTGTCC	alt_4925_fdr	6	3	4	2	6	5	5	1	3	2
CCTTCCGTGGCTCGTA	alt_4925_fdr	44	41	49	49	43	68	44	55	52	51
GAGCGAGGTCGCTCTT	alt_4925_fdr	8	8	19	8	8	13	8	7	7	9
CGTACGGCAAACACTG	alt_4925_fdr	36	46	91	61	60	52	52	44	53	34
CTTATTTACTTCTTCA	alt_4925_fdr	44	41	57	47	34	35	26	36	29	39
GATCGTCCCACACCAT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCCGGCCGGCTGA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTTCTTGATGAAG	alt_4925_fdr	113	102	115	101	89	107	89	97	113	111
ATGGTTGTGTCGGCTT	alt_4925_fdr	16	16	22	16	11	12	13	13	16	23
GTATATCAGCAGAAGT	alt_4925_fdr	88	84	105	91	72	86	93	69	87	76
TGAGCACTTTTTGCTT	alt_4925_fdr	24	29	37	23	37	24	20	18	29	29
CGTCTAGCGTTGCGCA	alt_4925_fdr	9	14	18	16	12	21	14	15	14	6
GTACGAGAGCAACTCC	alt_4925_fdr	10	10	15	10	6	8	8	12	6	9
CCGTCCTAGGGTTTTC	alt_4925_fdr	56	68	94	57	68	73	72	58	69	46
ACCAATGGTGAGTGTA	alt_4925_fdr	77	87	85	92	71	67	103	65	73	71
AGAATGGAATCCTTGC	alt_4925_fdr	13	14	25	25	19	16	15	22	23	21
AAAGACTTTCCTCCGA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CAATTCCCATCACTTT	alt_4925_fdr	6	8	13	11	4	6	4	5	9	5
CGCCGATGTTAGTTAA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTAATAGTGAAGTCTG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTCACACATATTTAAA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTTTACCTTACGAGCA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCCTGTCGGCTAT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTTGGCCTCTCCG	alt_4925_fdr	55	58	94	61	51	66	66	63	54	52
TCTTTCTGCGACCTAA	alt_4925_fdr	40	37	42	35	24	36	36	27	37	27
GCGATCAGTTGTCACG	alt_4925_fdr	40	15	41	20	16	33	23	31	24	27
ACGCCTCCGTGTTTAT	alt_4925_fdr	15	10	16	18	9	6	11	7	12	10
TCACTGACTATCGCGT	alt_4925_fdr	24	25	29	27	16	32	29	23	26	31
TCACCTTAGATTACAC	alt_4925_fdr	82	127	118	83	130	92	119	82	123	80
CTCTTCCATAGGCATG	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTCTGGCCCATTC	alt_4925_fdr	48	32	59	51	44	24	52	30	42	41
TTCCTGTATTGTATTC	alt_4925_fdr	7	17	21	12	8	8	10	7	9	6
ACTAGACGTGTAGGTG	alt_4925_fdr	78	105	110	107	108	82	102	85	116	77
TTTCTTCATTGGGGCA	alt_4925_fdr	17	21	24	24	14	19	31	29	20	36
AGAGGCATCTCGGTTC	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTCCGAATCTCCC	alt_4925_fdr	21	17	25	16	21	24	18	26	20	14
TGAGATTCGTGGGGGT	alt_4925_fdr	63	60	80	99	27	83	76	70	54	64
ATTCGTGTGGCTAAGG	alt_4925_fdr	10	9	10	14	7	11	6	8	11	12
TAAACTTACTTGTTTA	alt_4925_fdr	13	27	24	10	22	15	28	19	24	18
TGGCGTGTTTTAAGGT	alt_4925_fdr	47	29	37	38	46	45	30	44	50	35
CTGGGGTAAGGCTGAT	alt_4925_fdr	23	36	33	34	38	47	33	35	49	24
TACTTCGTCCGAGTTT	alt_4925_fdr	48	48	67	50	55	39	64	57	44	51
TGTGCCAGGGTCACAC	alt_4925_fdr	97	80	120	103	77	72	92	72	101	90
ACCGACATATGTCTTC	alt_4925_fdr	114	74	120	97	90	88	69	100	86	93
TTTACTTTAACTGCAA	alt_4925_fdr	60	59	90	61	73	77	83	49	88	51
ATTTTAGTTATCGTCA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCAAACTCGCTAA	alt_4925_fdr	63	49	80	69	57	55	52	59	59	45
ACATTCAGTTAGAGTG	alt_4925_fdr	203	156	240	193	197	190	196	186	174	146
TCTTCTTCAGTAAGCC	alt_4925_fdr	55	45	61	61	35	38	48	67	63	69
TGACGAATCTGTTGGT	alt_4925_fdr	34	14	39	27	21	18	18	28	21	34
TGCTATAATGCTCCGT	alt_4925_fdr	5	9	8	7	8	12	3	15	10	10
TGCTTTATAACGGATG	alt_4925_fdr	324	313	399	316	294	316	339	333	319	283
TCAAGCGTCCAGGTTA	alt_4925_fdr	128	145	156	136	177	131	178	124	138	142
GGTAGTTTACGCGGAT	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTACCGGACTATA	alt_4925_fdr	0	0	0	0	0	0	0	0	0	0
CATTGTCTCCTCTTAA	alt_4925_fdr	36	45	39	24	41	38	33	20	54	40
TGCCTGGGTGCAGATT	alt_1454_RC	11	10	10	0	8	4	11	9	8	5
TCCAATCCTTGCCATT	alt_1454_RC	47	57	62	72	59	63	51	60	84	47
TTGGAGTGCCGGAACT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
GTTCGACCGTGTATGT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
ATTCTTGCCGATGTCA	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
GGCCCGGCCCGCTTGC	alt_1454_RC	30	13	28	40	22	27	23	35	17	28
GGGTTCTTCATGAATT	alt_1454_RC	10	11	25	15	12	15	13	12	20	9
TTTTCGGTTAGACAAG	alt_1454_RC	5	10	2	4	8	6	7	3	9	3
TAATATTATGTATCTT	alt_1454_RC	151	104	209	154	108	107	121	134	106	117
CTCGTACAGAGACGAT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
TGGCATGTGCTACGGA	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGGTACCCAAAG	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
CCGATGCAACAATCAT	alt_1454_RC	33	27	34	30	26	29	26	23	31	33
CGTGATCTAACACTAA	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCCCACGTAGAT	alt_1454_RC	19	18	36	17	15	18	19	24	27	31
TCAGTATTTTCTATTC	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGCGGAGGCGCC	alt_1454_RC	52	40	37	53	47	46	41	41	50	47
TCTGCATAAAGTTCGC	alt_1454_RC	29	27	38	40	33	33	33	38	28	31
CGTCGCGTTAGATCGA	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
AGTGGCGCATGGCTGA	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
GCTGCCGTGTATCCTC	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
GTAATCGTCCAGCCCC	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
TGTGTAAATAAGTTAG	alt_1454_RC	84	84	87	76	65	59	92	66	75	73
TGGCTCCAGAAGATAA	alt_1454_RC	59	51	76	63	65	68	49	58	57	53
TGTCAGAGTTCAGGTT	alt_1454_RC	7	8	7	7	7	8	10	2	9	1
ATTGCGGAATGGTACC	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
CGGATCTGTCAGGCGG	alt_1454_RC	81	69	79	70	83	61	70	68	97	79
TTTCATCCAGGCGTTT	alt_1454_RC	13	12	18	20	12	16	8	20	17	13
AGGACTGCTGAGCAGT	alt_1454_RC	27	15	29	22	23	25	17	16	15	28
TTTAATGAAGTCCGGT	alt_1454_RC	23	16	26	25	18	20	15	14	16	20
GGTTGCGACCATTTCC	ref_1454_RC	2	0	2	0	0	1	2	0	5	0
TCGAAACGTACCAGTG	alt_1454_RC	16	23	17	16	25	9	19	12	16	13
TACTATTTCACGACTG	alt_1454_RC	16	11	9	11	20	11	22	15	28	12
TCAGCGATTTCAGGCA	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
ATCTCTTAGTTCCTAG	alt_1454_RC	34	31	42	45	44	30	39	40	42	41
GCTTATTGCACTTCTG	alt_1454_RC	17	22	17	12	23	18	11	12	11	14
TATGATTCTGTTATCA	alt_1454_RC	49	35	70	44	47	29	39	39	43	32
GGATCGCAAATGGAGC	alt_1454_RC	58	55	69	59	51	63	48	43	53	57
ATTGGGCGAAGTAGGA	alt_1454_RC	18	11	18	15	17	26	15	11	13	16
CTTGTTAAATTATCCC	alt_1454_RC	16	19	25	21	20	21	16	30	17	18
CTGTCGTCCTGGCTAA	alt_1454_RC	8	8	10	10	10	10	6	12	7	8
CTTCTCAATAGCCCGT	alt_1454_RC	9	9	12	10	9	10	10	3	7	7
GAAAGAGTCATGGTGA	alt_1454_RC	20	19	40	23	18	12	28	23	29	22
CTCGTGAGGCACAGGC	alt_1454_RC	7	17	5	3	12	8	10	1	17	2
TACGTGTTTCCCTATG	alt_1454_RC	35	39	28	30	27	33	21	24	31	25
CGCATCCTTCTTTTTA	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
TTTTTCACTTCGTGCA	alt_1454_RC	46	48	55	56	49	43	45	46	40	33
TAAGTAACCCCGCTTG	alt_1454_RC	9	5	10	10	16	12	10	11	9	8
ACTAACACGGTTGGGG	alt_1454_RC	12	5	7	2	8	4	13	4	4	5
GTTTTTACGACTTTCT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
GTCGTGGGGTCGTATT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
TCCCTATTATGCCATA	alt_1454_RC	17	27	29	29	19	14	29	27	30	17
GTACTCGAGGGGACTG	alt_1454_RC	56	67	84	74	53	54	80	48	65	57
AATCATTGCTCGTATG	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
GGTCTGTGCATTCTTT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
ACTATAGGAGTTGGAT	alt_1454_RC	30	38	24	28	28	24	33	17	15	21
AGTAGTTACACTAGCT	alt_1454_RC	10	15	21	15	17	11	22	12	25	12
CGGGTATAGTTCGTCC	alt_1454_RC	14	15	31	26	19	17	30	18	26	18
TAGCCTCGCGCGGCTT	alt_1454_RC	4	1	2	2	3	2	3	1	2	5
CTAGCTCGGTCGGACA	alt_1454_RC	5	2	6	8	11	8	5	5	9	5
AATTCCTTTAAAACGC	alt_1454_RC	41	36	46	42	28	43	25	43	24	48
AATGTTCAAGTTTCCT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
TTCAGTCCAAGTCTAC	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
CAACTTGAAATGAACC	alt_1454_RC	25	22	29	19	24	19	27	27	23	15
ATGTCATGCTATTCAC	alt_1454_RC	17	19	19	24	29	14	25	14	23	19
CCGTGCGTTATATTCG	alt_1454_RC	10	19	19	15	32	28	37	20	28	20
CTCTGGTTATATTCCT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
CGTTCGTCCGGATAGT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
TTAGGTTGCCTATTCT	alt_1454_RC	4	0	3	3	7	4	3	1	0	3
TCGTGTTTGTTTTAAC	alt_1454_RC	36	34	37	24	51	43	40	46	43	30
GTTAATATTAGCTAAT	alt_1454_RC	0	0	0	0	0	0	0	0	0	0
GGAGGCCTAGTTATGA	alt_1454_RC	21	13	23	22	15	16	17	19	19	20
GTAATATCGTTATCGA	alt_5572_fdr	10	11	16	4	9	9	4	5	3	4
CGGTAATGTTCGCCTG	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
CGTAACATGAGTGTAT	alt_5572_fdr	91	87	112	78	107	77	86	90	105	88
TTTTCCCCATGGGATG	alt_5572_fdr	51	68	59	66	69	46	73	46	66	40
TGGCCTTCGTCGCACG	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
CGCGCCCTTCAGGCCT	alt_5572_fdr	48	57	62	62	51	37	69	46	53	49
GTCGAGAAAAATTCTT	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGCGAGAAGTTCC	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
CGTAAGTCTGGGATCA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTGAATGGTTCA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
AAGGTACGTAGCGCTC	alt_5572_fdr	18	14	18	18	14	14	7	11	12	17
CGAGATCACATGGAAA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
TGCATAGGCAAAACCT	alt_5572_fdr	44	74	66	62	69	61	58	53	67	32
TTGCCTTAGATTTTGG	alt_5572_fdr	228	237	250	217	229	206	284	210	258	174
CATATTCCACTGTTTA	alt_5572_fdr	10	14	8	9	10	7	11	8	5	12
TTGAATGTTATCTAGA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGACGTACTTCCC	alt_5572_fdr	15	22	23	20	11	17	21	22	25	15
ATTGCGCTCAACGCTC	alt_5572_fdr	54	87	79	68	101	60	81	63	87	55
AAGGCAATGGTAGTAT	alt_5572_fdr	3	5	14	4	13	4	6	5	6	4
TGCGAAGACCGCGCCT	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
TACACTGAGCTCGCGA	alt_5572_fdr	117	149	158	135	151	138	132	136	145	134
GCTAGTCCGACTCGCC	alt_5572_fdr	16	41	30	13	28	15	36	15	47	19
GCACTAGCTACTCGCG	alt_5572_fdr	9	6	4	8	8	7	7	5	17	9
TAGGAGGCACATCTCT	alt_5572_fdr	13	20	9	18	19	14	24	12	15	11
TTCTTCCTGGGTTCCA	alt_5572_fdr	41	45	33	24	52	25	39	28	36	24
TACCTTTCGATACTAG	alt_5572_fdr	29	28	46	27	31	40	31	30	38	19
TCTCGTTCGCGGCAGC	alt_5572_fdr	59	48	63	43	45	47	49	38	51	33
GGTTGATTTACGGCAG	alt_5572_fdr	35	24	49	36	33	34	30	38	35	36
CTTGTAAGGCTCATCG	alt_5572_fdr	0	9	7	4	3	4	2	4	8	5
GTTACCTTTGACGCGG	alt_5572_fdr	9	9	4	4	10	4	10	8	12	8
TGCGGCTATCCTAACC	alt_5572_fdr	27	37	31	33	28	24	35	16	46	25
TGCAGGTTGTTTTGTT	alt_5572_fdr	86	95	100	78	78	63	79	62	64	68
CTTTGCGGCGTCAGTG	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
TTGATCACCAATGCTC	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTTATAGGGGTTT	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
CTCAGCACCGCATTCC	alt_5572_fdr	48	75	80	41	84	59	93	43	105	47
CAATAGGCGGTACTTC	alt_5572_fdr	24	10	22	20	26	17	20	18	26	17
GACTATGGCTATACTG	alt_5572_fdr	2	1	2	5	2	1	6	5	4	7
ACACCGAGTGCGGCTA	alt_5572_fdr	21	14	18	15	16	26	18	24	15	19
TTTAGTGTATCATCTC	alt_5572_fdr	40	32	41	39	38	46	45	37	38	37
GCCCTAACATGGGCAC	alt_5572_fdr	83	88	87	70	81	66	74	60	87	54
GATTTATCTTCTACTC	alt_5572_fdr	47	63	56	62	62	44	82	39	56	42
TGAGCGCCTTTTTGTG	alt_5572_fdr	20	18	25	16	17	23	18	18	16	19
GAGTTCCGACCCCAAT	alt_5572_fdr	104	127	127	102	130	108	110	94	144	87
CTGGGGGTAACGTACT	alt_5572_fdr	6	9	6	2	6	5	7	6	1	4
CGCCAGGCAGATACGC	alt_5572_fdr	37	45	43	46	40	28	53	34	36	36
AGACTTGTCTGAATAT	alt_5572_fdr	86	68	105	77	95	64	85	96	84	58
ACAACTCCGCGAAACA	alt_5572_fdr	80	104	128	78	130	67	140	69	145	64
AGGGTGTCCTCTTCTC	alt_5572_fdr	20	47	37	26	23	37	26	39	41	29
TGAATTTTCGAGCCTC	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGGGTTCGTACAT	alt_5572_fdr	63	53	63	38	66	57	59	57	75	44
CCCGCAATACATTCAT	alt_5572_fdr	89	152	135	98	154	112	170	96	178	108
GGGACCTGAACTTCAC	alt_5572_fdr	14	8	12	18	22	12	15	13	14	15
TTTCAAGGCGAGTAAA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
AATCTCGGCCCGGAGT	alt_5572_fdr	122	134	156	115	140	106	142	95	126	97
TGGATATTGAATCCCC	alt_5572_fdr	47	26	33	28	23	43	20	31	35	24
TACAGTCCAGCCCCCA	alt_5572_fdr	31	25	26	21	30	24	35	30	34	27
CTCCGCCCGCGCGTCC	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTATCGTCTTACA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
CATAGTGGGTCCCGCG	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTCGGCGGATTAC	alt_5572_fdr	134	142	177	183	140	129	160	147	185	119
TAGTTACCGCACGCTT	alt_5572_fdr	9	11	8	12	8	5	10	4	10	9
CATTTTTTGACTCTGC	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
GTTTACCGCCTGGCCA	alt_5572_fdr	41	55	61	49	75	47	46	52	70	42
TTTTGCACATACTCCC	alt_5572_fdr	20	44	17	35	43	16	55	13	66	15
TACCCTTCGTTCGCAC	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGTCTTTGGAGCA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCAGGGTGGTTT	alt_5572_fdr	13	13	23	20	14	17	24	14	16	16
CGTTTTAAGTGAGTAC	alt_5572_fdr	2	1	0	4	5	5	0	9	10	3
TTTTTTGTTCTAATAC	alt_5572_fdr	18	10	13	15	14	16	14	13	13	10
AAGATAGTACCACTGA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGGCTGTCTCGTT	alt_5572_fdr	20	36	23	19	19	14	22	16	18	18
CGCTCAGGTGACCGCA	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
ATCAAAGTTGTCCCTC	alt_5572_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGTCGCTGGCAT	alt_5572_fdr	7	13	5	9	12	6	9	9	7	7
GGTAAGTCGCTTCTTA	alt_5572_fdr	31	42	54	44	34	41	41	41	39	39
TTGAAGTTGAATGACC	alt_5572_fdr	76	87	114	104	107	67	119	66	83	97
TAGCCACGATCCAACT	alt_5572_fdr	32	52	49	38	55	43	51	28	56	36
CTCCTTGTCTGATACT	alt_5572_fdr	21	34	45	27	27	26	31	19	48	27
TAGAGTACGTTGTGTA	alt_5572_fdr	56	53	64	63	81	59	76	42	75	62
CTAATAGTAAGGTGCG	alt_5572_fdr	75	89	113	102	103	82	110	87	107	80
ACTGGACTGAGCAATC	alt_5572_fdr	10	11	12	5	21	7	9	6	12	16
GGGTGACCATGGTCTC	alt_5572_fdr	34	37	42	30	35	35	42	34	32	25
CTAGTATATTCGGGCT	alt_5572_fdr	32	34	37	33	23	24	36	26	41	24
GTGAGCCTGGTCGTAG	alt_5572_fdr	14	11	16	9	16	13	19	11	15	7
TATGAGTAGGTCCGGT	alt_5572_fdr	11	14	6	8	20	12	21	9	11	5
TGAATGCTAACGCAAT	alt_5572_fdr	121	135	151	146	123	146	154	113	133	120
AAAGTTACCGAGAGGC	alt_5572_fdr	14	9	24	14	13	11	16	14	12	12
GTACATAAGAACTAAG	alt_5572_fdr	4	7	2	7	3	7	6	7	1	5
GGCCTGTTTGGGACAG	alt_5817_new	15	13	20	16	18	11	19	10	26	11
ATTACGGATAGGTGAT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
AGTGGCAAGCAAAACC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TAATTTGGCAGTCTGT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TTTGTCCCGAGACCTC	alt_5817_new	50	67	46	40	55	44	79	33	89	46
GTATAGGATTGTTTTG	alt_5817_new	4	14	5	5	9	4	6	5	10	5
GCGCCAAGCGTGGTTA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
ACCGGTGTCCTGCTAT	alt_5817_new	13	9	23	12	24	16	29	12	23	12
TTGAGGCTTCTGACAA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GGTGGCCAATCATGCT	alt_5817_new	66	91	72	58	89	70	84	73	102	58
GCTATGCGCTATTCAG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CACTTGACTAGCCTAC	alt_5817_new	19	30	29	22	30	18	32	19	31	24
CGATTTGTTCTGAACG	alt_5817_new	13	19	14	4	16	6	16	10	14	10
TCACTGTCTTGTGACA	alt_5817_new	4	4	2	6	4	3	7	4	7	3
ATTTTCCAGATCCGCG	alt_5817_new	11	26	11	19	17	16	16	19	21	17
CCGCTACCCTGTTCTA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GTTATGCTTTGGTAGA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TTATAGTCGCAACGAT	alt_5817_new	10	18	31	12	19	16	23	7	26	12
ATCCTGAGTCTAGTTT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGCAGGTCATTGGGTG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGCCTTGGTCACGCAC	alt_5817_new	7	16	14	9	11	12	13	11	13	8
TAACAGCATTAGCGGG	alt_5817_new	34	40	51	41	52	28	44	38	50	36
GTTCCTTAACGATAGG	alt_5817_new	11	13	9	19	25	15	22	13	26	19
GAATATTTGACTTTAA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CTGAACCTCCATCTTG	alt_5817_new	0	0	2	1	1	0	1	3	0	0
TGAGGTCCCTGACCCC	alt_5817_new	126	171	173	128	152	121	197	105	160	122
ATGCTTTTTGTGCCAT	alt_5817_new	5	6	5	5	9	4	4	3	6	2
CATCATCAAAGGGATT	alt_5817_new	55	77	50	49	56	37	64	45	74	39
CATTGGTTTGCGCGAG	alt_5817_new	4	9	5	4	8	7	6	8	10	4
TGGTTGTGAACGGGGC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CCTAAGACCGCAAGAA	alt_5817_new	5	8	5	7	5	4	7	3	6	4
CGTGGCCCATTCCCTG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
ATTCTTTTGTTCTTTT	alt_5817_new	1	0	0	0	0	0	0	0	0	0
CTTCTTTTGAATGCGC	alt_5817_new	2	7	1	1	4	3	4	0	2	1
ACCATATTTTCAATGG	alt_5817_new	1	0	0	2	4	1	3	4	2	1
TGTGGCAGCGGGTCGG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
AGGTATGCTATCCTTG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GATCATCGGTTCATTA	alt_5817_new	43	55	42	26	55	33	50	32	41	41
ACCCGCTACTGCTCTT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGCAGATCCTCCATGA	alt_5817_new	104	89	121	109	115	103	105	84	92	88
TGGGATCATAAAGCCT	alt_5817_new	43	60	56	67	41	49	65	38	65	45
TTAGAACTCCGTTAGG	alt_5817_new	1	1	0	0	0	0	3	1	1	1
TCGATTACATCCGTTT	alt_5817_new	3	3	3	3	11	3	7	2	8	3
CAGGAGTTGTAGCTTC	alt_5817_new	7	11	8	9	10	13	11	5	8	10
GTAATGTAGTAAGCAC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGTTGGAGTATCCGTC	alt_5817_new	9	4	6	3	9	10	7	5	10	5
CACAACCTCGTCATCA	alt_5817_new	17	28	9	18	28	11	46	13	47	12
CGAACATGAGTTTTGC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TTGATTCCGCACTTTG	alt_5817_new	40	43	47	33	41	27	45	23	55	26
TCATAGGTACGACTCC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
ACTTTTAATGCGAGAG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
ACGTATGTCAGTCTCT	alt_5817_new	7	7	6	5	9	8	12	7	8	4
TCGCTTATCTGCATCT	alt_5817_new	14	11	11	9	5	5	2	6	8	9
GGGGCTTTACACAAGA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
ACTTCCTACGCTCCAA	alt_5817_new	9	13	10	17	21	7	33	7	18	6
GCGTCATTACTGCTAA	alt_5817_new	44	94	57	52	82	54	77	49	87	48
TTAGGCACTCGTGTTC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GACTATGGTGAGCCTG	alt_5817_new	11	7	7	11	7	5	8	6	7	6
GACAGGTGACCACTGA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GGAATTCTTGGCAAAA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GTATGTCAACAGACAG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
ATGATCTCTATGAGCG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TCTAAATCGGTCTCTT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGCAGATTCAAATGAC	ref_5817_new	11	28	11	13	18	13	20	10	15	25
TTTGATTGTTCGCGGC	alt_5817_new	28	21	41	37	14	18	33	23	19	24
CTCGGGCTTTACTCCT	alt_5817_new	3	4	3	0	4	0	5	4	2	2
TAACACTTTTGCCTAT	alt_5817_new	8	11	7	12	10	11	13	12	10	4
CTGCGCAACGTTCACG	alt_5817_new	21	26	27	18	22	19	28	16	20	14
GCAATGCCACTCCTTC	alt_5817_new	4	9	6	13	15	3	10	5	8	3
GAAGATGTCGCTTCCG	alt_5817_new	6	6	3	8	5	5	7	5	5	2
TCTATTGACGCCCGCT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGAATGTTGCCGCTAC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GGGTCGCCTATGATGA	alt_5817_new	26	32	32	33	41	26	31	16	29	20
CTCTTATTTCGGATTC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GCACTACGAACCACTA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
AATTCGTGCCGTTCCG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CACGAGGTGCTTTGGA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TATCTTGTTCCATGTC	alt_5817_new	23	16	16	31	17	7	10	17	16	12
TTATGGTGCAGCGCAT	alt_5817_new	8	1	6	10	3	1	7	7	8	5
TGGCGTCATCCCGAGC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TGAGGTCCCTGCCCCC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CTGAAAGCGTGAGGCC	alt_5817_new	21	21	15	16	29	15	21	25	17	10
CAAGACGCCAAATATT	alt_5817_new	11	11	11	20	18	14	20	17	22	14
CCATGATAGTTCAGCA	alt_5817_new	2	13	5	7	15	2	14	7	8	5
ATCTTGTTCCTCCCAT	alt_5817_new	11	20	6	4	16	8	16	11	15	5
TGGCCTAAGTGACCAG	alt_5817_new	14	16	14	7	12	13	24	8	15	9
CTCATTCTGTCATTAA	alt_5817_new	7	12	5	5	10	4	5	3	3	3
TTCAGTAGCTGAGTTA	alt_5817_new	105	148	151	109	151	97	174	104	175	83
ACTTAGGTATGGGCAG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CTTACGGGGCATCCCG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TGACGACTTGTGTTTC	alt_5817_new	30	29	36	31	24	29	40	32	32	28
TTGCTCGTAGCGGCAA	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TGGTTTCTGATCGGAG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTTGGCTCGAG	alt_5817_new	29	42	32	40	58	44	41	41	45	31
GCGCCAAGGCAGCCTA	alt_5817_new	0	2	3	2	0	1	1	2	0	2
CAGGATCCATTTTTAT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GGCGCCTTCCCCCGGC	alt_5817_new	7	7	10	11	9	7	7	4	10	3
CTTCCCTGCGGGGGCA	alt_5817_new	7	10	13	5	11	12	10	13	23	4
TATTGGTTAGCTGCGT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GTATCCGAGTCCCCTA	alt_5817_new	6	6	7	9	9	10	5	8	9	2
GACCTTTGGAATTTTT	alt_5817_new	26	54	26	33	59	30	36	30	44	24
GCAATGCCACTGCTTC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
GGTTTATAGCACGTCC	alt_5817_new	6	2	4	2	2	7	6	5	3	2
AGGGCCTGAGCAGCTT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGGTCGTACAGGATGT	alt_5817_new	5	6	4	7	6	6	6	5	8	8
TTTTCCGTAACTTCCC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CCCCTTTTGACCCCGC	alt_5817_new	3	5	0	3	2	3	4	3	8	1
TTCATGTGGCGAGTTT	alt_5817_new	26	47	40	28	54	36	44	30	49	23
TCAGCCGGAGTTCTAT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CCAATTGTGGACCAAG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TCGTGTCCGCCGGCTT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CGTTGTTCTCATTCTG	alt_5817_new	2	13	4	9	8	7	13	5	13	10
AAATGGCAAGTGCGTT	alt_5817_new	16	32	19	28	30	16	29	15	21	24
CATTATGGCAGCCTTC	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TGGCTTTCTAATTTCC	alt_5817_new	31	25	34	27	32	29	29	36	36	27
CCAATTATGTGCTCAC	alt_5817_new	5	16	9	21	22	12	25	10	22	13
TGGACCGCCCCGCGAT	alt_5817_new	45	26	56	43	68	42	49	61	60	42
TTGCACGGAGCTCAAG	alt_5817_new	5	8	4	0	4	6	8	4	6	4
TGAACCAGCTGGTATT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
TCGGTGTCGTATAGCT	alt_5817_new	5	2	2	2	3	2	4	1	1	2
GCTATTTTCCTTTCCT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CCCTGTATACAAGCTC	alt_5817_new	1	0	2	3	3	3	4	3	4	2
CATTATGAAAGTTATG	alt_5817_new	5	4	2	1	6	0	1	1	2	2
TCCCTGCCACCGCGAC	alt_5817_new	7	10	18	5	4	14	7	14	7	14
GCTGTCCGGATTGCAG	alt_5817_new	11	15	13	7	26	13	24	10	26	11
TCGCTAGCTCGGTAAT	alt_5817_new	3	4	9	1	4	2	4	2	6	4
CATGCCTCCAGGTGCT	alt_5817_new	9	12	17	10	12	7	7	9	11	14
ACGCACACGTTCATTT	alt_5817_new	19	26	20	20	9	15	18	16	17	14
TAATCCGTGTAATCCC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TCATTTGAATGTTGCG	alt_5817_new	8	8	6	6	9	7	13	6	8	4
GTATCTCGACTCAAAT	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CCTGGCCTCCTCAGGT	alt_5817_new	8	9	6	19	13	20	13	7	17	9
ATAGTCAAAGGGGTAT	alt_5817_new	39	52	63	43	54	31	59	49	45	44
GATCTTATTGCACTAG	alt_5817_new	0	0	0	0	0	0	0	0	0	0
CTGGAGGGTCATGGCG	alt_5847_new	0	0	0	0	0	0	0	0	0	0
CACACTTTTAGCGAGG	alt_5847_new	11	19	10	6	15	12	15	6	26	4
CGGGCGACACGTTTAA	alt_5847_new	0	0	0	0	0	0	0	0	0	0
GGCACCCGTCTTTAAC	alt_5847_new	0	0	0	0	0	0	0	0	0	0
GGAGACATTGTTTAGT	alt_5847_new	41	60	40	37	62	46	80	34	64	30
TGGATTGCCAGCGGTA	alt_5847_new	0	0	0	0	0	0	0	0	0	0
GGCGGCCCCCTTAAAG	alt_5847_new	62	96	92	62	91	60	79	58	98	70
TGCCAAGGTGTTCTCT	alt_5847_new	5	5	2	3	10	5	8	1	10	5
GCTCGAGCTAGTATGT	alt_5847_new	26	30	32	27	43	14	39	12	47	21
TGTCATAGTGGAGGGC	alt_5847_new	3	4	3	5	13	0	1	1	6	1
ATCGGCTTTGGTCTAG	alt_5847_new	11	24	27	22	33	21	31	16	23	22
CACTTTCGCCGGATAT	alt_5847_new	0	0	0	0	0	0	0	0	2	1
GTACTTTGCTATTTTA	alt_5847_new	29	66	30	36	51	30	63	33	61	32
TTCAACGGTGACCTGT	alt_5847_new	8	22	11	15	15	6	23	6	26	6
AGTAATCGCATTATCC	alt_5847_new	29	41	33	33	35	32	51	23	44	19
ATCGGTCTTTTAACCC	alt_5847_new	9	35	25	15	26	14	40	14	23	13
GGTTGCCCTTGACGCC	ref_5847_new	10	6	4	2	8	5	7	2	10	2
GGTGTAATAGATGTAT	alt_5847_new	22	50	38	22	49	25	45	21	48	29
GGTTGCAAGATGACCT	alt_5847_new	58	76	80	69	67	55	82	60	64	60
AGTAGACTGTTCTTGT	alt_5847_new	26	43	31	27	59	21	73	21	53	25
CCACGAGGATTGCGGT	alt_5847_new	6	10	6	6	9	6	13	6	14	3
ATACGCACCTACGAAA	alt_5847_new	44	101	53	54	130	42	93	44	121	48
TCTATATGCCAGGTTT	alt_5847_new	91	156	97	84	188	85	141	85	139	68
TAGCCTTTCACTTGAC	alt_5847_new	15	26	12	23	28	11	24	6	33	19
TGAAGGCTTTCTCGTC	alt_5847_new	35	66	42	44	52	43	45	42	60	38
TACACAACTTTATCGT	alt_5847_new	18	25	21	17	25	15	21	16	22	12
GTTTCCAAATTCCGGC	alt_5847_new	31	50	36	18	36	24	45	29	40	21
GGGCGTCGCATTTTAT	alt_5847_new	0	0	0	0	0	0	0	0	0	0
CAGCAGAGGTGTAGGG	alt_5847_new	11	17	13	12	15	12	14	8	14	10
CGTTTGTTGCATTTAT	alt_5847_new	28	33	33	24	53	35	30	32	40	20
ATCGGTATTTGCGTTA	alt_5847_new	22	29	16	15	14	13	30	12	18	14
ACCACTGCCTCACTAT	alt_5847_new	4	13	12	3	7	8	15	7	5	3
TTGGTGTGTTGTAGTA	alt_5847_new	38	55	43	24	48	25	58	26	52	20
TTATCAGGCCTCAGTG	alt_5847_new	21	21	8	13	20	17	29	16	32	15
CGGTAACCCTGCGCAA	alt_5847_new	89	151	114	97	148	95	179	77	174	81
AATCTGAGTGCTTTGA	alt_5847_new	0	0	0	0	0	0	0	0	0	0
CTAAACGTTTCGTATA	alt_5847_new	18	27	18	13	25	14	28	15	38	14
CAACGCCAAGTAGCTC	alt_5847_new	0	0	0	0	0	0	0	0	0	0
AAATTACATGCCGCTA	alt_5847_new	7	15	8	13	24	13	27	10	19	8
TAGTCTCGGTCTTGTT	alt_5847_new	46	79	51	28	77	28	72	30	84	29
GCACCACTCTTTGCCG	alt_5847_new	18	31	19	22	45	22	35	13	34	18
TCGTGTTAGCTTGATG	alt_5847_new	4	2	4	4	4	4	5	6	7	4
CATAGGATGTCGGTTA	alt_5847_new	0	0	0	0	0	0	0	0	0	0
TGTATCGAGTTGTTTG	alt_5847_new	4	1	6	7	20	3	9	6	13	4
TATCTCTGCATCTGCA	alt_5847_new	26	49	43	34	29	28	50	21	47	28
TTCGGTAACGCTTATG	alt_5847_new	1	2	0	0	4	1	1	0	2	2
GACCGATGTAGTCGAG	alt_5847_new	24	30	24	31	30	20	26	24	41	28
CGTTAAGCTGTTCTAG	alt_5847_new	0	0	0	0	0	0	0	0	0	0
TTTCAGCAACTTAATT	alt_5847_new	0	0	0	0	0	0	0	0	0	0
TTGTGGTCATCAAGCC	alt_5847_new	21	33	24	23	37	22	42	23	35	16
TCTCCGCCACCTTTGT	alt_5847_new	6	9	6	8	11	0	11	5	6	6
CTCGTTCGAGATCTTC	alt_5847_new	23	44	38	28	54	36	48	30	75	35
TATTTTTACGCGCTGA	alt_5847_new	0	0	0	0	0	0	0	0	0	0
ATTTACATTCGATATG	alt_5847_new	0	0	0	0	0	0	0	0	0	0
TTACCGTTAGGCTCAG	alt_5847_new	0	0	0	0	0	0	0	0	0	0
GCATAAAACGGTCGAG	alt_5847_new	0	4	1	3	9	1	4	1	5	4
GCCGGGTCCTTCCTAG	alt_5847_new	0	0	0	0	0	0	0	0	0	0
TAGTACATTACTTGAG	alt_5847_new	0	0	0	0	0	0	0	0	0	0
TTTGACAGTTTTTACT	ref_6119_new	27	10	34	29	15	27	5	19	11	17
TATGACGGTCCAGTTC	ref_6119_new	135	29	155	153	30	123	33	134	28	90
GACAAGCTCGGTCCAT	ref_6119_new	61	22	104	82	25	61	16	87	23	75
GTGGGGATGATTTCAC	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CTAGATTTGCAAGCGA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TTGGAACGCAAACTTT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TTTTCACCTACAGACT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
GATCGCAGTTCCAACT	ref_6119_new	277	59	354	306	69	286	78	247	67	250
CCTTTGATTCAAGTCG	ref_6119_new	372	98	477	403	92	359	111	361	116	322
TATCTAGTTATTTCAG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
ACGATTGTGCCATCAA	ref_6119_new	59	8	77	64	13	60	26	64	17	51
AGGTTCGGAGCGTGGC	ref_6119_new	0	0	0	0	0	0	0	0	0	0
GGCTGAGAAGGCTCCG	ref_6119_new	213	49	223	219	53	187	61	200	51	159
CATAAGTCCGCGGTGG	ref_6119_new	26	10	21	17	4	18	6	20	4	17
AGCGTTCGTCCGTGGC	ref_6119_new	275	67	343	308	68	283	78	242	60	213
CATAAGTCCGCGCCTC	ref_6119_new	37	4	45	29	8	21	5	15	6	19
CCTTCTTTGGGATCCG	ref_6119_new	313	89	413	379	83	285	91	329	99	290
AGGGAATCTGTGTTAT	ref_6119_new	30	11	59	47	12	35	11	38	15	37
GTTATGTTGTCTCTTA	ref_6119_new	95	16	98	64	22	76	21	86	32	66
CTACATCCATACTTCC	ref_6119_new	101	32	140	137	50	114	47	133	59	128
TGGTGTGGGAAGTGAG	ref_6119_new	105	19	137	115	22	78	33	88	17	78
TGGCGGCGCTGTTATT	ref_6119_new	82	18	96	100	16	95	22	61	25	83
CCCGTTGATCGTGGTA	ref_6119_new	17	15	24	20	16	10	10	16	27	21
CCCCTTACTGGATTCG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CCCCGTATCCTCTGGG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
ACCGGCATCCTCTAGC	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TGGTGAATTTCGAGTA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CCAGTGACCCACGTTT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CGTGTACTCTTGAACG	ref_6119_new	36	4	51	31	9	42	14	51	12	35
TAGTGCTTGTATGCCC	ref_6119_new	117	22	147	101	24	118	32	104	22	86
CCATGGGGAGATACGG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TTCCGTCCCGGAAAAA	ref_6119_new	229	49	315	261	53	244	67	247	74	198
GCCAATTTGTGCTATT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TTTTGCTTCAGTTACA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TCTTTCTTATTATATC	ref_6119_new	469	105	606	532	103	507	106	469	110	442
CCACTCCAAATGGGGT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TCCTGTGATTAGGAGA	ref_6119_new	32	10	68	53	8	41	11	40	16	31
GATATGCATACATATC	ref_6119_new	88	19	98	94	17	79	24	104	26	70
CGGGGGTTAAAGTCAG	ref_6119_new	22	5	14	16	12	19	8	17	4	18
TTCAATTCATGAGCGT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TTTATTCGTTTTAGAT	ref_6119_new	78	26	98	86	15	78	25	74	17	60
TTGGTATAGGCTATCT	ref_6119_new	418	109	597	501	98	424	102	459	96	379
GGCTGTATGCGCGGTA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
GTAGCGATAGTAATAC	ref_6119_new	27	5	38	41	4	31	13	35	3	29
TGCTCCTTTTTCCAGG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TGTAAGGTTTACCAGG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CCGTTTTCAACTTTCT	ref_6119_new	25	2	26	18	2	32	7	15	9	16
GGGCTAATCCTTAGTG	ref_6119_new	229	44	295	225	45	249	49	226	50	232
GCCTTAAAGTAGATTA	ref_6119_new	143	43	177	189	50	151	44	156	47	113
ACGTCCGCTCGCTGAC	ref_6119_new	133	36	147	123	25	132	40	121	29	108
GGTCTTGTAGAACATT	ref_6119_new	23	10	31	37	10	26	13	21	7	20
TTGCATGCGAAGTAAA	ref_6119_new	645	132	739	685	157	614	134	634	175	556
CCTATTTCAATTCAGT	ref_6119_new	340	67	412	348	100	320	75	306	87	255
ACTAAACCTTCTAATC	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TATCTTAGTCAATGGG	ref_6119_new	122	32	174	125	23	123	37	119	33	115
GGTGTGCCCCTCTTTG	ref_6119_new	20	1	19	18	1	23	3	14	7	9
AATAGACGGATAGAAA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
GTAAGATTAGATAACT	ref_6119_new	26	9	58	52	8	23	18	36	11	38
AGCGCTGATAACTACG	ref_6119_new	35	3	28	29	9	27	12	24	12	28
TTTTCCGCAGGTTAGC	ref_6119_new	119	24	156	110	34	100	34	93	34	109
ACTCAAGGGTCTTCGT	ref_6119_new	52	9	65	79	18	64	15	62	26	56
CGCCAAGCCCCTGAAT	ref_6119_new	107	54	168	197	56	151	47	126	63	109
ATTAGGCTGCTCAGTT	ref_6119_new	33	10	75	47	9	32	14	54	10	40
CGAAAATCCTCTCAAT	ref_6119_new	32	11	57	46	11	38	13	46	8	38
TTCCTAAATATAAGAG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
GCTACAAAATCGGAAT	ref_6119_new	42	9	51	47	4	41	14	39	8	26
TTATAAGAGGAGTACC	ref_6119_new	69	47	86	107	29	67	32	91	24	71
GTCCCCGGCAGCGACG	ref_6119_new	109	23	125	121	30	106	29	90	34	100
GCCATGTGACTGCTGA	ref_6119_new	159	39	180	185	38	143	32	156	30	119
CTAAATGATGGATCTG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
AACATGGTGTGGTTGT	ref_6119_new	168	46	171	193	36	164	45	168	54	130
GTCGGCGCTTCGTTGG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CGATTCAACTTAGTGA	ref_6119_new	28	4	30	34	7	26	7	28	7	24
GCAGCTCCGTTCCGCT	ref_6119_new	550	111	735	600	137	500	124	577	145	461
TGTTGATTTGCTCCTT	ref_6119_new	106	15	117	129	22	102	29	96	14	85
TGTAATTTGTTTCTCG	ref_6119_new	353	84	460	379	77	343	98	371	95	311
ATCCCCATAGGCTGCG	ref_6119_new	135	51	152	103	65	117	58	121	56	95
AAGGTTTGAAGGTCTT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CTTATTTCTGCCACAT	ref_6119_new	84	13	125	115	11	104	18	85	30	70
AGGGATTTTTCTTGTC	ref_6119_new	160	23	195	197	30	159	35	169	34	149
CTGTGTGGTCTCTGCT	ref_6119_new	176	40	178	179	49	148	44	181	48	118
TCCTGCCGGGTGAGGC	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TTTCTCAGTTCCTTAT	ref_6119_new	184	57	263	249	50	193	56	207	71	166
GCGGAGCACATCTCGC	ref_6119_new	0	0	0	0	0	0	0	0	0	0
ATTATTGCGTACATAG	ref_6119_new	3	2	21	9	6	6	0	7	4	9
AAAAAGCGGCCTCTTG	ref_6119_new	43	6	68	61	11	38	8	44	8	39
ATACTGTCGCTTTACG	ref_6119_new	309	77	324	313	82	269	76	311	80	223
TTTGTTTCAGCAAACT	ref_6119_new	89	17	118	115	19	87	21	89	24	71
CCTATTCATGTTGACA	ref_6119_new	48	21	98	95	11	77	27	79	15	57
ACTGCCGAAGGTTTCT	ref_6119_new	58	24	100	85	27	58	22	64	32	46
GTTCTCCCTCGTCGTA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TTGGCAGTATGATTGA	ref_6119_new	360	90	457	406	79	362	111	281	105	316
GTGTTTTGCCGTGTAT	ref_6119_new	0	0	0	0	0	0	0	0	0	0
GCTACAGGCGGATAGG	ref_6119_new	60	19	106	69	19	79	24	82	26	65
TTTGCGACCGACCCAA	ref_6119_new	180	51	246	218	47	190	40	174	47	168
ACTCAGTCGTCCAACG	ref_6119_new	0	0	0	0	0	0	0	0	0	0
ACTGGGGTAAGAATAA	ref_6119_new	409	80	481	400	94	366	92	386	99	388
TAGACAACGAACAGCC	ref_6119_new	0	0	0	0	0	0	0	0	0	0
AGGGATTTTCAGCGGC	ref_6119_new	560	111	665	635	116	489	116	550	93	476
GGCCCCGATTGATTAA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
CCGGTATGGTTTTAAC	alt_6119_new	331	96	392	370	84	306	105	326	118	264
AGCCCATCCATCTCGA	ref_6119_new	50	12	83	76	17	65	26	66	11	46
TCATTCCGAGCTATCA	ref_6119_new	134	31	176	192	37	152	41	146	37	140
TTGATTTATACAAGTA	ref_6119_new	171	34	235	153	39	172	40	152	42	140
ACCTGTTCCTCGGACC	ref_6119_new	69	13	68	50	13	39	14	44	20	58
TGTCGTAAGCGTCCCA	ref_6119_new	0	0	0	0	0	0	0	0	0	0
TGAAGGTTTAGTTTCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCCCGCTTGCAGCTAA	alt_5815_new	26	77	42	32	84	35	92	32	110	29
GACCGTGCCCCATCTT	ref_5815_new	31	21	61	41	26	33	18	36	28	45
CAACAGACAGGATTTG	ref_5815_new	0	0	0	2	0	0	1	1	0	0
CCTTTTCTAATAGTTG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GATTACCCTGACGGCG	ref_5815_new	42	20	55	44	25	47	39	46	29	40
TTCGCGCCGTTTTTTC	ref_5815_new	83	33	107	73	31	57	25	72	45	58
TCAGGGTGTGTTAAAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CGTATCCGCGGAAGAA	ref_5815_new	90	46	115	100	56	99	35	78	56	86
CTTCGACGCCCGGGGC	ref_5815_new	31	22	32	40	13	37	20	38	18	23
CTCCAATGTGCTTTGT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GTTTGCTTGTGGTAGA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TACACTTTTAGGTCGT	ref_5815_new	92	57	99	84	46	95	47	62	49	90
TTCGTACAGTGCAAAT	ref_5815_new	197	76	232	202	80	167	109	142	86	158
CATGCCTAATAGCCGT	ref_5815_new	10	4	6	11	8	10	4	5	6	5
AACCGATTAGGAATAA	ref_5815_new	54	25	77	56	38	62	30	61	34	50
GCTCACGGTTTTTTAG	ref_5815_new	15	4	9	16	5	15	9	15	8	11
AAGACCTTTATGAGGG	ref_5815_new	3	1	1	0	0	3	1	0	0	1
CTCTGCTTTTTTCGCC	ref_5815_new	33	21	36	44	21	37	21	30	31	26
TTGTATTTGGCCAACT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GTTGTATCTAATAGAA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TGTGCCTCGTGCGCTC	ref_5815_new	8	3	18	24	15	10	10	21	6	10
TCAGCTTGGGGTTTCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CGGATTTGATGAAATC	ref_5815_new	27	13	17	19	8	20	23	10	11	16
TAGGTGCCTGGTTTCG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GCTCACTGTACTTTAG	ref_5815_new	75	33	82	66	44	59	45	59	51	58
AAACGAGCTGTCCCCG	ref_5815_new	53	54	97	90	39	76	34	69	34	63
CTGTGCGCGCCAGAGC	ref_5815_new	167	102	214	169	85	202	102	163	113	148
GTTGTTTTGCGCTGCT	ref_5815_new	39	18	52	44	21	46	17	37	15	33
GCTCTTTACTGACTTT	ref_5815_new	15	14	12	22	12	15	6	13	6	14
TAACCAAAAGGAGAGA	ref_5815_new	46	21	55	36	17	44	23	34	23	32
GTATATTAGCTCTATT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GATCCTGAGCGGTCTG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CCAGCAAGTCCCGTAA	ref_5815_new	0	3	0	0	1	0	6	0	5	0
TAATCAATTCGGCTCA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GTGGAATGTACTATTG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CACATCTTATCGTCAC	ref_5815_new	14	11	9	10	10	10	7	12	9	11
ATCAGTAGTGCGAGAT	ref_5815_new	36	29	42	52	26	37	18	41	24	44
TGCCATTCCTGCGCAA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GTGCCGTTCCGCAACC	ref_5815_new	16	13	27	26	12	19	10	17	17	21
AATACATTCTAACTAG	ref_5815_new	40	20	58	47	28	35	24	32	20	29
TCTCTAGGGGAGGCTA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GTGATAGTTTGAAGGT	ref_5815_new	8	13	8	13	9	5	12	15	10	9
GTTATAGTGGGTTCTC	ref_5815_new	6	3	14	8	4	10	5	10	5	5
GCGGTGAGAACCTGTT	ref_5815_new	75	41	98	103	55	72	39	87	54	71
CCGTAGATTTAATTTG	ref_5815_new	5	4	4	4	10	4	15	4	3	9
CCACGTCCGTGGCTTG	ref_5815_new	22	13	35	17	12	25	16	21	14	28
CTCTTGTTGATTGAAG	ref_5815_new	15	10	28	31	10	13	11	16	14	29
GCCGTATAAGGTTTCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TGCTTCTTGGGGCAAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CAACCAGAAGTTCGTG	ref_5815_new	14	10	12	24	5	15	9	10	9	14
TTGAATTCTATAACGG	ref_5815_new	14	1	9	8	7	8	8	8	6	10
GGCATAATAGACGAGA	ref_5815_new	118	56	166	151	58	134	64	121	69	112
CTTTGTCTGTCGGGTG	ref_5815_new	40	32	68	50	40	46	27	56	28	53
TTCAATGAGCGGTCAA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AGTCTCGCGCCCGTCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGGGAGCTTTTATGAC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CCCGCCGCAGGTTAGT	ref_5815_new	15	15	19	23	12	16	11	23	14	7
CCGGTCTGGCCCCTCT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AGCGTTCTGTTAACAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTGAATCTGGTCACCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TGTAGCCTATTGCCTT	ref_5815_new	0	0	0	0	0	1	0	2	2	1
TTCACAGCATTAACGT	ref_5815_new	61	25	64	63	24	44	20	43	38	51
TTTAATTTAGCGTAAT	ref_5815_new	65	34	88	74	40	73	33	66	36	65
TAGAGGTATTACAAAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGTGACAGCACGGTCG	ref_5815_new	57	54	94	80	45	67	55	64	56	52
TATGCAGCCGTATTCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ACTATACTAAATACCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TGCGGTTACTTCGCTT	ref_5815_new	15	8	25	15	12	16	16	13	7	18
CGTGAAATATTTTTGT	ref_5815_new	83	43	121	95	55	90	51	85	39	87
CGTCTTTATCAGGACA	ref_5815_new	31	12	32	25	12	34	9	35	25	22
CTTTCCTCTGCTGGAG	ref_5815_new	1	0	4	2	0	0	0	0	0	2
GTGACGAATCAGTGTC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CGAGGAAGCGATTGCC	ref_5815_new	129	70	141	126	62	141	71	119	83	108
GGTGTACTCTAGCGGT	ref_5815_new	84	48	109	86	47	77	59	100	51	60
ATTCAGCTAGGCGTTT	ref_5815_new	33	21	58	39	13	42	21	46	24	35
AAGTTTGAATCGATGC	ref_5815_new	6	5	11	6	3	6	7	3	3	4
ACACTCTCTGCACCGT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ACTGTTTTGAGTGTGT	ref_5815_new	84	56	105	97	37	78	55	59	58	62
TGACCGCTTGCGACTT	ref_5815_new	60	46	80	73	39	77	35	56	30	48
AATTAGAATCGGGAAT	ref_5815_new	13	11	13	13	10	6	7	17	9	9
CAAGCTGCTACCTTTA	ref_5815_new	21	8	18	24	19	29	10	16	21	23
ATTAGTCGGTTTCGAG	ref_5815_new	47	15	35	33	17	46	14	26	35	27
ATCCGTTTATGAAACT	ref_5815_new	46	32	43	57	31	61	17	47	31	53
CCTGAAGCGAGTCCTT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGGGACCTACGGCCGT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AAATAATGAATACAAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CAGCCGCTTTGTTGAG	ref_5815_new	20	20	35	26	19	25	22	24	14	24
TCTAATCCAATGCATC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GCTATGACCTCGTAGG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CAACTGTCCAATACCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TACTTTCATCACAAAA	ref_5815_new	3	4	6	2	1	1	2	7	7	3
AGCTGATAATACTTTG	ref_5815_new	26	21	28	29	12	32	18	24	16	12
GTTTTACGACCTGCGT	ref_5815_new	48	37	75	50	28	46	36	52	23	60
TAGTAGACATTCGTAG	ref_5815_new	35	23	40	29	18	27	17	22	17	24
TTCGGCCCGTGTTTAC	ref_5815_new	21	10	32	31	12	19	14	31	13	26
AAGTCCGTGCCCATAG	ref_5815_new	145	77	216	143	84	149	90	164	75	145
CTGAACATTGCTATGC	ref_5815_new	45	26	53	51	27	47	25	49	22	46
GGGTCATCGAAATCGG	ref_5815_new	14	8	13	14	10	17	8	20	5	16
TCTGTTCGCGTGTCTG	ref_5815_new	25	11	21	9	22	19	15	16	18	19
CCATGTTACTCTTTAG	ref_5815_new	32	32	29	37	26	23	43	40	35	36
GACAAATGATTCTTTG	ref_5815_new	85	28	84	75	22	60	29	67	41	48
CAGTCTTTTAAACTAT	ref_5815_new	29	19	32	47	25	44	25	32	17	23
ATCGCAAACCATGGAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTCGGGCTGTGCAACA	ref_5815_new	144	101	197	193	95	163	100	167	133	148
TCTAGATCCCTTATCC	ref_5815_new	48	51	54	42	38	38	38	56	38	30
TTTGTTTGCCAGGCTT	ref_5815_new	1	1	7	5	0	5	0	4	5	2
AGTACCCGGGGGCATG	ref_5815_new	169	97	185	155	85	133	102	147	118	150
AAGTTTGGTCTGAACT	ref_5815_new	94	56	100	82	27	84	50	62	34	69
TCATCTCGATATAGGT	ref_5815_new	42	17	53	25	20	30	24	34	32	30
CAGCATCTGACAAATT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ACGCTATTATGAGCCA	ref_5815_new	57	18	41	52	26	39	17	56	29	45
TGCTCTCTTGGAGCAC	ref_5815_new	11	16	24	17	8	12	15	6	11	12
GGCCACCCCACCGTTT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ACATTACTCATACGAT	ref_5815_new	9	4	12	4	6	7	7	15	9	8
TCCCTTATCTATCTCG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AAATCAGCCTTATGTT	ref_5815_new	3	4	8	3	1	4	2	2	4	2
ACAGTAATCCACACGG	ref_5815_new	29	11	46	43	25	34	24	50	25	44
CAGGGTTATCACGCCA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCCCCCATCCGCCCCA	ref_5815_new	32	26	49	32	20	32	26	31	29	31
TAGGATTGGCTTGGGA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ATCATGTTCATACTAT	ref_5815_new	71	54	94	82	38	67	51	59	48	57
GGGAATGTAGCTAATT	ref_5815_new	34	24	61	56	26	39	27	41	21	47
TTCAGATGAAGCCCCT	ref_5815_new	77	40	85	63	34	50	38	51	60	69
ATGCCAGGAAAAAAGT	ref_5815_new	56	46	94	61	57	71	37	66	49	58
GCCACCTGAAAGTTGC	ref_5815_new	18	34	26	18	31	27	19	23	23	8
GATGCGCATGGGACGC	ref_5815_new	83	50	102	85	43	76	44	60	46	71
GCACTCCGTATTCGTG	ref_5815_new	0	6	0	0	2	1	2	2	4	0
TGGTAAGACTTCTGAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CGGTAATATGTCCCGG	ref_5815_new	38	27	50	46	34	36	21	43	19	37
CAGGAGGGTCTACTTT	alt_5815_new	36	12	27	27	12	17	12	22	10	13
CTGTGCCACATCTACT	ref_5815_new	64	41	102	66	41	58	44	79	55	51
TTCTTCAACAAGGATC	ref_5815_new	138	83	164	160	68	140	80	147	79	113
GTGTCAAATGGTGCAT	ref_5815_new	52	29	47	47	19	41	21	48	23	47
TCCATAACTTTTGTTA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CCACCTTGGGTCGTTC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AATGGCCAAAGCCTTT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AGCAGCTATTCAAGCA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GACATGCTTTCGTTAT	ref_5815_new	7	3	8	8	0	7	1	8	2	4
CCCCTACTGCTCTTGT	ref_5815_new	30	27	42	35	24	30	20	25	21	19
GGCATATCAATGGCGT	ref_5815_new	47	23	45	33	19	36	15	31	12	28
CCGTATTTCAGTACGA	ref_5815_new	8	3	17	8	5	7	3	12	8	7
TATGAGCATTCATTAT	ref_5815_new	68	34	78	66	39	64	40	49	37	55
ACGTTTTGGGTCAGCC	ref_5815_new	86	52	91	97	52	82	28	87	60	81
CGAAGGCGTTAGGGCT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GTGGCTGCGAGAATAA	ref_5815_new	3	5	9	9	5	6	5	9	6	8
GGATAGATTAAGGGCA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TGAATGCGTGGATATT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TGAATCTTATGGTTAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ATCTAGCAATCTGTAC	ref_5815_new	11	8	13	10	12	15	3	14	10	9
TTGGACCGGACATGGT	ref_5815_new	97	66	132	140	65	106	89	104	62	101
TATACTAAGTCACTTA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCTTTCTGAACGACCC	ref_5815_new	29	14	33	36	22	22	12	29	9	29
ACGTCCGCCACGGCTC	ref_5815_new	7	4	22	18	9	17	11	15	11	17
TGCTAGACTTTAAGTG	ref_5815_new	13	9	21	27	21	16	17	18	17	18
GCAAGTATTATCTTGA	ref_5815_new	47	17	84	62	27	42	42	73	28	55
CTCATCTATTGAGGAA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGTAGAGTGACTACGA	ref_5815_new	92	36	89	105	39	81	63	82	45	69
TGGTAGCCAGTCTTAA	ref_5815_new	24	21	30	30	18	29	22	26	20	19
GCTCCTATTGAATTAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGTGCAATCTTCCAAC	ref_5815_new	80	48	102	86	49	59	36	39	33	87
GAGAATAGTTCATAAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCAGTCGGAGGCTCGG	ref_5815_new	6	1	6	9	2	3	1	6	4	3
TACCTCTTTCGATATA	ref_5815_new	8	2	8	5	3	2	2	4	2	4
ACGATGATCGTACCTA	ref_5815_new	35	20	60	45	21	20	29	33	23	45
GTTAGTCACTAACCCT	ref_5815_new	14	10	19	16	14	17	16	15	10	9
ACCTGGGCATCACCTC	ref_5815_new	114	45	170	112	56	101	75	121	68	97
GCATGGTTCCGCACCG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTTCCTTTGAATGCAA	ref_5815_new	10	7	6	12	4	10	7	2	0	9
TCCACTCACCTTACTT	ref_5815_new	74	61	67	80	59	62	66	71	68	55
ACTTTCTCTGTTATTG	ref_5815_new	22	20	26	21	15	17	11	32	18	18
CTTGCTTTGTTGATAA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTGTGCTTGAGCTATT	ref_5815_new	65	42	67	63	32	56	25	66	38	58
TTACTCACCTCGCCCG	ref_5815_new	18	28	24	20	22	21	23	18	38	22
ATCCGCGCCTTCCGGA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AGCTTAACTATCTCGT	ref_5815_new	88	46	114	82	43	65	40	89	40	74
TTTCAACCCTTTTCTT	ref_5815_new	127	76	167	122	64	106	65	121	73	108
GCCTAGCTTCATACGT	ref_5815_new	33	21	27	35	19	30	13	18	16	19
GTCCCGGGGATAACAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCTCTTGTCCCCGGTT	ref_5815_new	26	8	27	16	11	31	15	18	14	17
ACTTGGCCAGTCCGGT	ref_5815_new	54	27	53	55	34	41	24	56	41	46
TCTCTCAAGTAAAATG	ref_5815_new	126	67	147	129	49	107	61	110	81	90
CATGGTTTGTTACTTT	ref_5815_new	4	3	1	2	4	2	4	2	0	4
GTTCTCATTTCGTCTC	ref_5815_new	58	25	55	63	40	55	33	64	41	57
TTGCTTCTTGATGCAG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTCCGGTAAATCATGG	ref_5815_new	67	35	82	67	37	62	20	60	28	63
ATCGGGTAGCTGGTGA	ref_5815_new	14	5	16	17	10	24	11	12	14	8
ACATCCACGCGCTTGA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCATAGCCTGTAAATT	ref_5815_new	1	2	3	7	0	5	3	6	1	2
CTAGTGATTGAAACGT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TACGATCTTGGGTTAA	ref_5815_new	111	59	115	103	63	88	48	93	39	97
TGGCGTATCGCTCTCT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTAGGGCATTACTCCC	ref_5815_new	12	9	16	9	5	8	5	16	4	4
GGATCGGCGTTGTCCT	ref_5815_new	21	12	32	29	13	25	17	31	11	18
GGGGGGCTATCACGGT	ref_5815_new	45	16	39	31	26	42	10	36	17	27
AGCTGTAAGCACTCGA	ref_5815_new	23	16	30	20	15	24	21	22	16	17
GGTACGGCTTTTGTCC	ref_5815_new	53	34	76	86	26	67	35	59	47	57
CATGTTACGACGATCG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ATATCTGAAGAGTACT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTGGTAACCAGCAGCG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
ACGCCCTACCTTTAGG	ref_5815_new	64	45	74	73	40	64	73	74	50	65
AATACCCACTTTAAAC	ref_5815_new	46	13	35	32	7	33	18	23	15	35
CTATCTTAGAATCGAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AATGTCCATGCATTAT	ref_5815_new	108	45	111	105	55	82	59	71	61	100
TGTTTGTGCGGCAGAT	ref_5815_new	136	84	163	159	82	151	91	162	81	129
ATCGTACAGTGCAAAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GATCCGTAATGCTAAT	ref_5815_new	35	17	63	45	20	35	26	45	22	34
TCTATTTATGATCAGA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTTGTCTTGAATCGTA	ref_5815_new	92	37	112	106	33	107	52	79	53	80
CACAGAGTTAATGGAC	ref_5815_new	145	83	180	109	74	123	57	112	92	123
ACGCTTAGGTTCCCCT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CCTTACGTTTAACCTT	ref_5815_new	62	35	56	66	46	53	56	66	45	67
CAGGATAGCTTAATTC	ref_5815_new	63	35	75	71	28	60	36	58	44	53
CATTTTTGGAGGTCCG	ref_5815_new	7	6	13	8	6	8	2	4	7	11
GAGACAGTAGTGGCAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CGGCAATACGCTTTCC	ref_5815_new	178	95	170	149	91	136	88	155	89	149
AGCTGTACGTCGTTTC	ref_5815_new	56	34	58	59	38	38	26	48	39	61
GTTGGTCGGAGCGGAA	ref_5815_new	46	30	63	65	21	41	34	40	33	30
TCGGGAGAGTTCCGCT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TACGGTTGCGGAAAAT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCGTTGATGCGCATTG	ref_5815_new	65	54	103	80	39	67	52	91	38	77
CTTTTGTTAGCGTACG	ref_5815_new	14	15	28	18	14	13	15	27	18	14
GTTGCGTTCCTGGGAC	ref_5815_new	30	15	42	36	6	18	21	19	17	21
AGACTCAGTTCTCTTA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CCAAGTATCAGTAATT	ref_5815_new	35	19	37	40	20	41	29	36	36	37
TTCCAGGGCGAGACAC	ref_5815_new	14	6	26	13	13	10	6	14	7	14
GCAGACAATTCACTCC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TTTTTCGCCTTAGCTG	ref_5815_new	16	17	28	18	9	25	6	16	16	15
AACATGCTTTTTTACC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGATACTGTGTTGATC	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TAAAGAGAACAGCCCA	ref_5815_new	79	47	92	83	54	69	51	90	68	66
GTTTTGTCTAGAATTT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
CAACCGGGCTGTCGCC	ref_5815_new	25	18	26	27	25	20	25	20	26	19
TACATCGAATACAATA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TCTCTGCCTCCGATTA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
TAGTAACTCTAATTTA	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGACACACCCTGATCT	ref_5815_new	0	0	0	0	0	0	0	0	0	0
GGGTAATCCTATTTCG	ref_5815_new	0	0	0	0	0	0	0	0	0	0
AATTCTTCTCTGCCAG	alt_4446_fdr	69	80	96	84	73	76	93	75	87	80
TCTGTGCTAAGGTGTA	alt_4446_fdr	19	17	23	26	38	19	26	20	29	12
AACGGCTTCTGCATCG	alt_4446_fdr	3	5	18	1	8	4	6	6	12	7
GAGGCGGAAATTCATG	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAATCGATTGCGG	alt_4446_fdr	52	74	62	36	67	43	67	57	88	53
CATGTTAATTTATGGG	alt_4446_fdr	56	54	50	45	40	53	49	42	53	42
AATCCTATAATACCCG	alt_4446_fdr	20	53	37	11	37	20	34	24	44	33
GCGGATAGGCTTGACA	alt_4446_fdr	17	27	27	18	20	14	24	25	30	10
ATCACCAGTCTGACGC	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
GATACGGGCTACACTC	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAGACGGCTTACT	alt_4446_fdr	55	66	74	58	65	48	72	49	59	51
TCAAGGTCGCATCTAG	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
GTATAGTGTGGGGCAC	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTATCGCCTTATG	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
GAGAATCTAGGGGCCA	alt_4446_fdr	4	1	5	1	4	4	1	3	2	2
AGGAATGAGACATCGT	ref_4446_fdr	41	71	54	44	69	50	55	43	54	65
TCGGAGTTACCTCTCG	alt_4446_fdr	80	120	113	89	123	91	129	86	112	68
CACGTCATAGTCTGAC	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
TCCGACTCTTCGCGGT	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
AATCGCCCAGCCTACG	alt_4446_fdr	9	9	6	9	12	19	10	14	8	11
CTGCATAACCCCTTCG	alt_4446_fdr	40	45	60	46	55	48	62	40	66	47
CAAATAGGCTTATCGG	alt_4446_fdr	7	6	17	7	11	10	10	7	3	4
GAAACAATTGTGGCAA	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGCAATTGCGGAG	alt_4446_fdr	94	75	119	94	98	75	102	96	107	90
ACAGCAGAGGGAGGTT	alt_4446_fdr	1	3	2	1	3	3	1	0	2	3
GACTTGTCGCGTAGAA	alt_4446_fdr	7	19	8	20	5	12	13	17	21	15
GGAGAATTGTGAACCT	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCTTCGGGGCCTT	alt_4446_fdr	63	78	81	62	71	55	61	34	98	45
CAGTTCCTAATTCGTA	alt_4446_fdr	8	6	14	6	7	3	15	9	10	6
CCGATCCGTACTGGTT	alt_4446_fdr	16	58	36	21	65	28	50	15	43	23
GATAGATTTCATGGTC	alt_4446_fdr	11	35	27	13	19	28	24	32	26	17
TGTTGCGATTGAACAC	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTTTGGGCACTCC	alt_4446_fdr	82	84	75	66	78	73	88	74	93	74
TATCTCCATAAACGTG	alt_4446_fdr	58	87	62	66	69	48	96	68	70	46
TGTCTTGTAGCTTCTA	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTTAGTTCTAGAA	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
ATCACCGATTTATTAG	alt_4446_fdr	7	14	11	7	30	11	37	7	19	5
ACCCCACTGTGGCATT	alt_4446_fdr	7	33	10	16	32	9	54	13	40	13
CAAGCTCCCGGTTTTT	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
CGTGACAGGTACGTTG	alt_4446_fdr	57	66	74	60	64	49	56	47	68	47
CCACGGCCATTGAAAT	alt_4446_fdr	48	43	68	64	57	56	65	49	54	43
CATGCAAATTCTTAAG	alt_4446_fdr	10	27	29	23	23	21	19	17	29	15
ACACCCTGGTTCTCGA	ref_4446_fdr	51	67	64	53	58	55	59	43	64	56
GGAGGTGGCCGCAAGA	alt_4446_fdr	76	60	89	67	58	53	63	57	83	49
AGTGAGGTAGTATGCC	alt_4446_fdr	0	0	0	0	0	0	0	0	0	0
GCATATCTACATCTGC	alt_4446_fdr	101	130	110	99	135	104	142	100	137	99
AATTTTACTGTCTATT	alt_4446_fdr	28	32	35	47	40	34	48	27	57	36
GCGTCCGTGGAAGTGG	alt_4446_fdr	6	8	7	2	9	3	11	10	8	10
GTCATGGAGGCACGCG	alt_4446_fdr	111	132	130	101	132	115	122	93	129	98
ACTATCTTCCTTACTT	alt_4446_fdr	22	26	18	34	35	26	10	25	26	8
TCGTCTGCAGTGAGTG	alt_4446_fdr	54	60	69	64	50	34	63	46	76	49
TGACCCGATTAACTGG	ref_4446_fdr	23	23	37	25	38	17	22	20	20	22
AATCCTGGTCCGTCGG	alt_6066_new	0	0	0	0	0	0	0	0	0	0
CTGGGTCGAAAAAACC	alt_6066_new	25	38	17	26	25	20	42	20	47	14
ATTTGTGTGTGTCATT	alt_6066_new	15	28	21	19	44	11	33	18	44	13
TTTTCAGAACTGTGCG	alt_6066_new	17	14	9	17	37	6	20	11	27	13
CACTCCTAGCATCGAT	alt_6066_new	22	29	18	16	31	15	37	16	49	8
CATAACATGCAGGTAC	alt_6066_new	0	0	0	0	0	0	0	0	0	0
AGCGCTACAATTTATC	alt_6066_new	52	57	59	54	69	55	60	36	80	48
ATGTGCGTGTCTCCGA	alt_6066_new	0	0	0	0	0	0	0	0	0	0
CCTCTGTGCCACACAT	alt_6066_new	56	96	52	47	90	41	100	42	99	40
CGTTAGTGCTTCACTT	alt_6066_new	0	0	0	0	0	0	0	0	0	0
CCCCCACCTTCTAGAG	alt_6066_new	0	0	0	0	0	0	0	0	0	0
GCTACCATCTTGAGCT	alt_6066_new	4	7	5	3	12	6	6	6	11	2
TGGGTTCTGTTTGTAA	alt_6066_new	6	16	18	6	21	8	17	22	14	7
CTTCGATCGCCGAGAG	alt_6066_new	4	9	4	5	5	3	12	3	8	8
TGGTGGAATGGACCAG	alt_6066_new	92	154	100	69	95	67	127	70	155	56
CCGGAATTGCCAATCG	alt_6066_new	10	33	21	20	34	20	27	18	47	16
ATTTTCAAGTCCGGGT	alt_6066_new	0	1	0	2	0	1	0	1	2	0
TTACTCTCACAATTTG	alt_6066_new	0	0	0	0	0	0	0	0	0	0
CAAGTTTGCCTCAGAC	alt_6066_new	17	41	20	20	25	21	24	19	32	13
GCCACGCCATACTCTC	alt_6066_new	57	104	84	63	108	48	128	58	111	72
GTACTGGGTATTTTAC	alt_6066_new	15	37	32	22	60	23	36	27	46	25
GCAACGAGGCTTTGGT	alt_6066_new	0	0	0	0	0	0	0	0	0	0
CCCCACCTTCTAGAGC	alt_6066_new	0	0	0	0	0	0	0	0	0	0
GCTAAACAGATAACGG	alt_6066_new	20	50	29	29	49	37	50	20	51	39
TGAGATAGTTCTTGTG	alt_6066_new	15	23	10	6	11	11	16	16	11	10
CTATGAATAACATTAT	alt_6066_new	17	12	10	5	17	8	24	9	15	10
GCCCTCTTGGAATTTA	alt_6066_new	31	38	34	31	43	20	46	34	48	27
CTGCTCTGCCAATACA	alt_6066_new	10	15	11	16	21	10	11	6	19	13
CGTGGCGGTGTACTAA	alt_6066_new	0	0	0	0	0	0	0	0	0	0
GCATTCAGAATCTACG	alt_6066_new	10	8	14	14	16	6	19	12	21	14
ACCAGAATTCGTGCAG	alt_6066_new	0	0	0	0	0	0	0	0	0	0
CCGTATAAAGGTTTCG	alt_6066_new	33	46	42	27	33	28	54	32	38	25
ACGCAATCAGTAGCTT	alt_6066_new	12	18	7	9	19	12	18	14	15	12
AGTCGCAGCTAGAAGT	alt_6066_new	2	7	4	9	12	0	10	3	12	4
GCTCTAACCATGGGGG	alt_6066_new	12	18	19	18	31	16	32	19	24	11
CTTACGCTCAGACGCG	alt_6066_new	9	12	5	11	9	6	10	3	27	2
AAGTTCTCTTTTCTTT	alt_6066_new	0	0	0	0	0	0	0	0	0	0
ATCGGCCGCAGTTCTT	alt_6066_new	13	23	13	21	23	18	30	9	23	17
CGTCCGAGCGCGTATT	alt_6066_new	17	31	18	13	24	18	23	17	24	11
CCGCGTTTGAATCTCG	alt_6066_new	0	2	0	0	4	0	0	0	1	0
TCATTTCGTATGTGGA	alt_6066_new	42	120	50	47	97	57	126	48	119	56
TCTTCAGCTCGTCTTT	alt_6066_new	6	28	12	14	28	7	30	13	31	8
GGGTGATTAGTTTTGT	alt_6066_new	6	14	7	5	4	4	6	5	9	2
GTGTTCATTAAGACAT	ref_6066_new	81	111	73	56	102	59	134	61	100	61
TTTTGATGTAGGAATG	alt_6066_new	0	0	0	0	0	0	0	0	0	0
CATGGCTCGCCGCTTG	alt_6066_new	0	0	0	0	0	0	0	0	0	0
TTCAAGTGAGTTGTGT	alt_6066_new	0	1	1	0	0	0	1	0	0	0
CCTGCGTATAATTTGT	alt_6066_new	10	30	15	20	28	21	35	18	45	19
CCTTATCGGGACATCA	ref_6066_new	26	46	56	29	54	34	77	41	51	25
ATTCACTTAGTTTATC	alt_6066_new	98	155	107	105	180	81	175	88	180	87
CGGCCGACTTTCGAGG	alt_6066_new	0	0	0	0	0	0	0	0	0	0
ATCATCAGGCAGTTGT	alt_6066_new	28	25	26	29	41	26	49	23	45	26
GGTTCTTTTTTTCGAC	alt_6066_new	3	6	2	1	2	4	1	3	4	2
ACTATTACAAGCCGTC	alt_6066_new	2	6	8	3	6	4	2	2	3	0
GCCAGCCTTTTTTAAT	alt_6066_new	7	42	24	10	43	12	54	12	48	14
CTGCCGTTTGCTCTTG	alt_6066_new	47	60	52	53	77	42	56	35	61	29
CCTTCAACACTGTTCA	alt_6066_new	0	0	0	0	0	0	0	0	0	0
TAGGGATATATCTCTC	alt_6066_new	1	6	1	5	4	4	7	1	8	1
CGTCGCAAAACGCCGG	ref_6066_new	30	32	17	13	19	11	28	20	24	22
CCGCACAACTGTAGCT	alt_6066_new	87	132	116	94	156	83	177	82	161	96
GTGTGCGGCTCGGCCC	alt_6066_new	0	0	0	0	0	0	0	0	0	0
TCTTGCTCCGATGATG	alt_6066_new	40	58	41	33	48	28	48	25	44	28
TGAGAGCCATTACATG	alt_6066_new	10	8	14	11	15	6	25	9	16	6
TTTCGGGGTCTCTTTA	alt_6066_new	0	0	0	0	0	0	0	0	0	0
TTATTCTCGACTATCG	alt_6066_new	32	82	41	34	69	47	75	32	93	28
CGAATCGTCTGGGTGG	alt_6066_new	20	67	12	14	68	11	50	12	70	15
GCTACAGTCGTGTGTG	ref_534_fdr	36	40	34	46	37	41	32	39	32	30
TGTTACCCCGCCTTTG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
AAAGAGTTTTATCGTT	ref_534_fdr	189	202	310	255	218	215	189	220	223	197
GAACCTCCACAATCCC	ref_534_fdr	10	7	8	9	9	5	11	9	13	6
TTTTGTAATTTTGAAC	ref_534_fdr	4	2	4	2	2	3	4	0	4	3
TTTCTTGACGACCTGC	ref_534_fdr	54	32	57	63	36	42	33	52	53	43
GACTCCTCGGTCTGGA	ref_534_fdr	16	8	10	15	12	12	23	10	9	5
GCGCTTCCTTCATAAG	ref_534_fdr	40	46	54	49	34	41	41	40	35	48
CAGTCATCTACGTACA	ref_534_fdr	12	12	10	12	6	3	13	8	11	5
CGCTCTCTTATTTAAA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TATTCACACTATTAGA	ref_534_fdr	29	12	33	29	9	38	7	27	9	35
TCGCGGCCTTTCCGGT	ref_534_fdr	29	32	31	38	25	25	25	32	24	20
ATGTGATCTCCGCCCA	ref_534_fdr	64	70	83	79	41	72	72	62	64	64
CCGACCTGAAGGGTCC	ref_534_fdr	12	8	9	13	15	10	14	6	12	13
ATTATTGTTCTGGAGC	ref_534_fdr	51	40	61	40	35	53	51	49	33	39
GACTGCTCTACATCTT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GCGCGTATCATTGGTA	ref_534_fdr	19	31	35	31	19	33	25	23	23	23
GGAGCAGACCTGGCCG	ref_534_fdr	35	37	50	46	29	47	32	30	49	36
ATCTCCCTGGTGGGTA	ref_534_fdr	4	2	10	6	2	5	3	2	2	6
CGCCTGAAATATTGAT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GAACGTGTTTCGCCAG	ref_534_fdr	118	90	149	125	131	97	80	104	89	106
ATTACTCACTGCAGAC	ref_534_fdr	19	19	29	17	22	14	11	17	10	17
ATTAGTACAGTGAAAT	ref_534_fdr	159	114	180	178	116	125	131	120	131	121
CCACCGCTCATTCTAT	ref_534_fdr	12	14	24	19	21	15	17	28	20	15
ATATGCGAGTAGGAAG	ref_534_fdr	3	5	7	6	6	3	6	5	1	1
ATTATACGTATAGGGT	ref_534_fdr	3	4	10	6	9	5	7	5	5	6
GGAACCTGGCCCAGTA	ref_534_fdr	57	57	86	87	56	77	51	68	64	71
CTTCATTTAGTGTGGG	ref_534_fdr	66	57	75	57	54	81	60	54	50	52
TATTCTACCAGGAAGC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CATCCCCATTGCTAAG	ref_534_fdr	23	33	46	26	19	34	40	25	30	26
ACGATCTCTATAGCAG	ref_534_fdr	82	129	76	62	126	54	139	55	134	47
CCTCGAGTTCGTGCTT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
ATGAACGTTTTTGCGT	ref_534_fdr	11	10	16	12	7	8	12	9	12	19
TAGAACCAGAGTCTGC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATGGGAGGTTTT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GAACGTGTCCTATTTG	ref_534_fdr	10	8	10	8	9	11	12	10	11	6
GGTTTACGGCTTGGAC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGGTAATTCGAGG	ref_534_fdr	45	39	54	51	36	44	33	49	45	45
GGGTAGCTACTCTCAT	ref_534_fdr	9	8	3	2	6	5	6	5	5	3
TCACTGTCAAAATCGC	ref_534_fdr	13	8	19	15	11	2	11	8	7	11
GCGGATCGTGCACGGG	ref_534_fdr	88	61	100	96	67	102	74	75	78	60
TCCTTACATCAGAGTC	ref_534_fdr	22	36	52	37	43	27	44	29	30	30
TGGGTCATTTTTAGTG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGGAGTGTTTAAT	ref_534_fdr	98	101	113	99	109	92	107	84	99	90
CGCGAGTTTTAATAGA	ref_534_fdr	92	90	124	98	91	87	122	72	82	94
TGAAGTCATAAACTAT	ref_534_fdr	28	45	47	46	40	47	25	32	32	43
CTGGGCCCTTATATCG	alt_534_fdr	320	344	401	348	305	333	339	286	336	278
CATCTTGGTTATGATT	ref_534_fdr	50	33	56	37	37	35	47	46	52	37
GCGTTCTTATTCCCCT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCTCATATTCATG	ref_534_fdr	183	131	215	69	158	139	157	148	135	148
TGCGCATTTGCTATAT	ref_534_fdr	84	116	114	90	95	95	97	81	119	87
CAGTTTTATCGGCTGT	ref_534_fdr	431	309	470	420	296	317	326	403	325	355
GTCCTAACTAGGCCAC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATTTACTAAGTG	ref_534_fdr	329	373	462	368	322	367	387	262	397	280
AGTTTTGGCCTTTCGG	ref_534_fdr	27	18	40	39	26	21	26	21	24	25
TAGGTAGTGGCGCTCG	ref_534_fdr	98	98	117	110	91	96	101	102	93	113
CGACCATGCCTGTTCA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GTACTGCCACGGTTAT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CGCCATCTTGCTTAAT	ref_534_fdr	51	56	59	68	56	47	34	65	52	54
TGTATCTTATGTAGTG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATCGGCCCCGGC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTGGGTTGCATGG	ref_534_fdr	40	47	55	39	40	37	58	41	39	31
CTTCAGCAGTGCCTAC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTCCCTCCGTGC	ref_534_fdr	25	25	29	37	28	23	24	19	38	28
TTGACATGGATACGAG	ref_534_fdr	14	27	35	23	19	24	22	24	19	22
TGCCCCTTTGCATCTG	ref_534_fdr	22	14	24	19	18	19	12	12	12	10
TACTTTTGGTTCTTGC	ref_534_fdr	33	22	32	35	23	28	38	23	24	26
CACTAAGATCCACATG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CTCATGCCTGTCCGTT	ref_534_fdr	151	127	210	167	129	158	139	205	130	152
GCGGACCGAATCTGCT	ref_534_fdr	42	42	35	27	40	42	34	54	31	23
GTGTGGCTCTGGGGAC	ref_534_fdr	93	88	103	98	96	98	96	82	75	56
TTCCAGCTTTTAGTTT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TACGTATTCGAATGGC	ref_534_fdr	65	55	84	70	47	53	59	79	52	52
CCTTATTCAAGTGCTG	ref_534_fdr	16	24	15	22	25	20	25	13	21	13
CGCATTTTCTCTACCG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTTTGTCGAGGC	ref_534_fdr	26	23	34	26	25	28	25	33	31	23
TGCCCGTTCTCGGGGG	alt_534_fdr	135	107	174	147	127	138	96	120	125	106
CCCCCCAGTGGCCCCA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GTCTAGTTGGCGTGGA	ref_534_fdr	62	35	69	67	37	46	45	55	62	38
GCAGCACCCCTTCTAA	ref_534_fdr	7	3	10	3	8	1	2	2	1	7
AAAAAGGTTGGATCGC	ref_534_fdr	123	120	147	129	98	96	126	109	101	110
GGCCCGCGTCTTCCGT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTTACATCTCGGT	ref_534_fdr	19	21	35	27	20	20	14	28	30	27
ATTAGGGTTGGTGCGT	ref_534_fdr	25	37	42	35	34	38	30	36	46	33
CGTTGTCGTTTTGGAT	ref_534_fdr	146	171	202	191	157	149	171	161	165	148
CCATGGATCCACTTTG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TATCGCAGTTGGAGTA	ref_534_fdr	61	37	67	57	59	53	48	44	43	60
CCGGACGTGGGATGTC	ref_534_fdr	38	65	47	44	56	36	58	49	54	33
GGGTTCTCTCGTCATT	ref_534_fdr	13	10	15	13	6	11	8	7	5	13
ACTTAGCACAAGCTTA	ref_534_fdr	55	48	55	50	67	47	78	38	60	52
CCCCAGAAGGCCTAAT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGGGGGTAACAAG	ref_534_fdr	3	10	10	10	4	16	9	9	10	8
GGCCACCTTACCAATC	ref_534_fdr	86	71	83	107	74	69	71	66	75	69
CACTGTAGGTATGCGA	ref_534_fdr	12	4	12	8	10	9	6	8	11	6
CTAGCTACCTACGTGG	ref_534_fdr	38	29	41	58	40	36	41	46	40	42
GCAGTTTTTCGCTAAT	ref_534_fdr	32	25	20	19	20	28	29	29	23	24
GATGGTTCGATCGTGG	ref_534_fdr	390	375	537	429	362	378	400	407	386	352
CATTTGTTGTTGGTTA	ref_534_fdr	5	3	4	1	4	7	2	5	7	2
ACTCAAATTATAGCCT	ref_534_fdr	15	20	23	19	16	16	13	16	16	12
GCGGGCCTCTCAGATT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTTATATTGGTCT	ref_534_fdr	21	16	34	26	16	15	20	12	22	22
ATGCCGCTAGCTCAGT	ref_534_fdr	25	36	25	38	18	22	36	25	27	24
ATCAGAGTTTGTCGGT	ref_534_fdr	13	23	21	26	14	14	15	17	6	14
TATCTAATTCGGCTAT	ref_534_fdr	18	15	14	24	10	18	24	14	11	24
GTTCCTTACTGCGCTC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTTCAGGCGTTT	ref_534_fdr	9	12	8	6	5	7	8	8	10	5
CAGTTTTAACGGCTGT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CAGATTTATCGGCTGT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGGTTGGTATGTA	ref_534_fdr	21	27	22	28	16	22	24	12	20	21
CCGAGCTTCGAGCGAA	ref_534_fdr	8	7	7	10	6	15	8	14	6	3
TCGGCGTCTATGGTAC	ref_534_fdr	12	11	15	13	9	11	8	18	15	8
GCTCCTCACGTTATAG	ref_534_fdr	167	140	181	143	129	124	159	137	153	101
TCCATTTTTAAGCACT	ref_534_fdr	27	29	26	31	26	35	24	39	22	26
ATTAAAGTCATGAATC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTACGAGGTTGGC	ref_534_fdr	82	75	109	74	64	78	92	100	64	58
GACTGTGTGTATTTGT	ref_534_fdr	97	97	139	109	115	99	117	104	131	74
GTCGATTTCCCAACTT	ref_534_fdr	41	28	51	41	41	31	28	41	51	27
CTTTCTCCGTGTGGTG	ref_534_fdr	16	6	6	8	7	6	11	3	6	5
CGCTAGGGCACCCCAC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TATGCTTCTACTATTG	ref_534_fdr	73	68	95	83	72	64	69	66	75	60
GGGACTACGCATGATT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CACTTTTCACATCAAA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GGCATTTAGCTCTCTT	ref_534_fdr	83	80	108	78	64	82	82	98	103	60
TCTAGCCACGGCCTCG	ref_534_fdr	21	16	17	19	13	15	17	27	20	18
GGCGAGAGTACTATGA	ref_534_fdr	30	19	34	31	16	21	16	27	31	27
ATTTGGCTCGTTCAAG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
AACTAGGGCATGCTCT	ref_534_fdr	4	6	9	2	4	7	4	8	6	9
TCTATATTGTTGGGTC	ref_534_fdr	13	6	12	13	6	11	9	11	2	9
TCACAATAAGTCTTTA	ref_534_fdr	72	62	83	94	82	65	90	83	76	98
GCTATAGTTTTCGAAG	ref_534_fdr	92	82	88	91	77	67	84	71	98	79
TTGGCGTTACGAGCGT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CTCGACCATTTCGAGA	ref_534_fdr	32	37	32	21	26	21	23	21	21	26
TATCGATGCTCGTGTC	ref_534_fdr	111	61	124	90	91	94	83	83	65	72
CCTTATTGACCTGTCA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCCTCTCATACAA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAGGCGTTCGTTG	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TATAATAATTAGCTAC	ref_534_fdr	78	63	90	67	75	62	68	56	70	50
GCGAACTCAGTAGTTT	ref_534_fdr	8	12	7	11	6	6	4	12	10	8
TGTAGTACCCCCGGCG	ref_534_fdr	103	112	91	76	109	57	116	67	139	92
GCGGGCGTTAGTTCCC	ref_534_fdr	37	28	23	42	21	26	22	25	32	28
CTCCCTGAATTTAGAT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGTCAGTAGCCCC	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTGCACGGTACG	ref_534_fdr	50	42	55	46	44	31	43	43	60	46
ATTCTCCGTGTTTCTG	ref_534_fdr	49	48	87	75	65	69	66	70	48	55
GGCCAGCGTATCCTGT	ref_534_fdr	3	4	6	8	8	9	7	10	5	7
CTGCTCTGGAGGGCTT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTCTGGGGAACTG	ref_534_fdr	16	16	44	28	21	25	20	28	26	36
AGTTTGTGATTCAGAA	ref_534_fdr	207	194	197	218	172	204	211	165	176	172
AAATTCTCTGTATCAT	ref_534_fdr	0	3	0	0	0	1	0	0	0	3
AAGATTATATTCGTGC	ref_534_fdr	45	47	61	62	36	45	36	52	34	43
ATTCTTTTATTGTACT	ref_534_fdr	2	1	3	1	0	3	4	3	3	5
CGTTGTTTAGCCACGG	ref_534_fdr	39	40	52	50	35	38	48	25	43	34
TTCGTTGTCGTCTTAA	ref_534_fdr	5	4	12	5	1	8	3	6	2	2
GGCCCCTCATCTCCGA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
ATTGGGCACCCTTTAG	ref_534_fdr	73	68	98	87	72	65	72	72	87	68
GCGAGTTTTTGCGATC	ref_534_fdr	69	52	68	67	54	64	60	76	53	57
CACCAACCTGGTCGTT	ref_534_fdr	91	86	105	106	102	110	85	103	91	98
TACGAACACATCCAGA	ref_534_fdr	23	40	39	35	46	35	31	39	36	26
CCCGTCGGCTGGATAG	ref_534_fdr	8	24	25	15	20	13	16	8	17	19
CGCGACGCGGTTCAGT	ref_534_fdr	94	67	82	84	70	53	52	69	65	70
GGATACGTCTTAGGGA	ref_534_fdr	42	34	43	49	42	43	47	36	36	33
CTCGTCACAACGCTAT	ref_534_fdr	9	5	8	10	11	0	10	5	7	1
TCAATGCACAACCGAC	ref_534_fdr	104	81	94	89	79	93	85	75	93	103
CTTTCTTGTGTTAGCT	ref_534_fdr	40	58	49	38	43	33	45	27	41	46
TCTTCTCGCGTCAGGT	ref_534_fdr	37	36	52	49	40	39	41	37	52	38
TTCGTGTTGGGCTTAA	ref_534_fdr	7	9	9	11	11	10	7	7	13	8
TGCTGGTAGCTTTCAT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
CCGTCTTGCATTCTCC	ref_534_fdr	27	23	33	41	27	39	17	25	18	27
GGCCTAGTCTCATTGG	alt_534_fdr	22	26	28	26	24	29	27	23	35	18
CGGGCTCACGTGTGTT	ref_534_fdr	90	84	103	119	85	78	90	73	85	83
ACGTCCTTTGATCTTT	ref_534_fdr	88	59	113	85	78	80	95	88	85	67
CGGGTTACATCCGCGT	ref_534_fdr	79	50	120	74	83	78	61	66	66	95
GTTTCCAGCTGCCGAT	ref_534_fdr	75	53	89	76	59	77	64	91	56	66
GTTCACATGGGCGGCT	ref_534_fdr	32	20	42	32	22	36	40	30	29	33
GTCTGAGTTGTTTAAC	ref_534_fdr	112	115	153	112	103	110	102	113	114	108
TATGTAACTGTCTTGT	ref_534_fdr	114	90	129	77	94	82	76	94	99	76
CCCCACTTGTGTTAGT	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTGTGTTTCTTTT	ref_534_fdr	123	86	168	150	86	131	109	120	124	132
GGGCTTGTAGGGGCTA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TTATTTATACAGTGGC	ref_534_fdr	15	17	21	14	16	9	24	11	24	14
GTCTCACTCTACGGCC	ref_534_fdr	10	5	5	4	5	4	3	6	3	6
CTTATCCAGTTGTTTA	ref_534_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGTGCCTTATGTT	ref_534_fdr	51	44	39	41	47	41	46	43	56	34
TCAGCTTCAAGCTTTC	ref_534_fdr	13	18	7	6	15	13	24	7	16	7
ACTCTCCAATCGTACA	ref_534_fdr	80	86	89	68	59	60	89	48	69	60
TGTACCAGGTCCTATT	ref_534_fdr	13	4	5	2	9	9	7	2	3	7
ATTTTGGCTGCTTCAG	ref_534_fdr	49	39	94	68	30	64	31	52	57	51
CCTAACAAATTGAGTT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
GCACACTAAACCTACC	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
CAACGTTCCATATTAG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCAAGAGATTTTA	alt_292_fdr	29	26	31	25	22	21	25	25	17	30
CTCCCGAATGTACGGG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCTTTCCAGGTGT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TATGACTTTCTTAGCG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCTTTCGAATGTA	alt_292_fdr	17	30	33	25	34	37	30	11	29	28
TCGCATACCCTCCTTG	alt_292_fdr	21	53	40	22	46	24	55	33	52	27
CGTCTCTGTCCATTCG	alt_292_fdr	13	17	29	13	12	14	13	10	26	18
CCCCATGCAGACTTAG	alt_292_fdr	131	117	124	151	138	118	150	133	129	122
ATATGCGGCCTGATGC	alt_292_fdr	211	161	262	227	135	214	164	205	205	216
ATGGGCCTTTCTCTAG	alt_292_fdr	43	40	37	44	21	31	35	28	36	20
TCTATGGTCCCGTCCA	alt_292_fdr	64	53	100	55	60	68	52	51	57	51
TTAGAATTCCGCCCAG	alt_292_fdr	24	29	43	27	25	30	19	21	29	29
GCTTTACTTGGCTCTG	alt_292_fdr	9	6	8	12	12	4	11	5	9	7
TTTTTCGGCTGGCGAG	alt_292_fdr	104	95	148	111	107	105	113	123	124	107
TTTGTGTATGCACCAG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTACTACACTCGA	alt_292_fdr	32	64	38	52	56	44	62	28	52	34
TCACAATCAATACAGT	alt_292_fdr	47	50	55	36	61	42	44	27	40	33
GATCTCTTGACGTGCA	alt_292_fdr	5	4	5	8	2	3	3	3	7	1
TGGTATGAGTAGTGAG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTCGTGCGTGTGC	alt_292_fdr	171	142	188	134	169	140	173	162	167	119
AGCCGGCTTCACTTAG	alt_292_fdr	54	66	91	67	96	68	78	59	94	63
GCAAACACCATGATTG	alt_292_fdr	93	91	116	85	77	97	100	88	77	89
AGGATATCTCGTTGCC	alt_292_fdr	36	35	31	33	19	21	32	32	34	27
CTTGTTGCTGTTTGTC	alt_292_fdr	89	109	117	113	98	99	104	84	107	106
ATTTTTCTTGGCACTA	alt_292_fdr	96	61	101	85	76	83	60	75	87	70
TGGGTCGATTAGGTTT	alt_292_fdr	79	52	100	96	72	90	65	78	88	67
GAAGCGAGAGTCGGGT	alt_292_fdr	93	69	106	102	80	95	75	92	74	73
CAGTGGTGTAACGCGA	alt_292_fdr	30	33	35	32	40	34	28	31	35	24
TTGTTGGCGTCTTTTA	alt_292_fdr	104	79	116	96	73	78	85	81	82	79
GCCGCATGGGCACTAA	alt_292_fdr	8	7	6	6	6	8	20	3	6	9
TGGGCTGGAAAGAACG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTACCTGGGTCA	alt_292_fdr	27	20	29	34	32	21	32	24	25	26
TCGAATATTGCACTTT	alt_292_fdr	7	3	5	6	3	9	5	4	1	2
TCATCTGCCAAGTCCA	alt_292_fdr	83	90	111	80	100	98	86	82	89	74
CTGTTCTTCGAGTTCA	ref_292_fdr	408	335	503	447	338	399	315	410	340	390
CCGCTTACGTTTCATT	ref_292_fdr	38	31	39	30	32	29	25	26	30	25
TTGTACACTTCAGTCC	alt_292_fdr	14	13	23	19	10	11	11	11	12	14
TATTTTCAACCCCCGC	alt_292_fdr	37	19	36	32	20	29	17	24	27	28
TCGTTACGGAACAGTG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAAACGTTGACGG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTGTTCACCGTTT	alt_292_fdr	12	6	9	9	10	7	9	5	10	15
ATTCCCTTCGGTTTGA	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTATACTGCTGA	alt_292_fdr	46	67	32	45	74	52	74	46	67	42
AAGTCGTCTCGTGGTG	alt_292_fdr	16	19	19	20	8	19	13	16	16	13
TCGCTAAATCGGAGGA	alt_292_fdr	28	15	41	29	20	22	29	30	37	31
GTCGACGCTCTTTAGT	alt_292_fdr	37	29	57	39	39	38	41	47	34	29
CTTGGTCGACTCGAGT	alt_292_fdr	24	22	23	19	38	17	37	5	38	16
AGCAGACTTCGAAATT	ref_292_fdr	223	130	322	246	149	242	154	282	155	230
CTTCGGGTTCATCTGG	alt_292_fdr	26	17	20	23	26	16	20	14	15	24
CCAACGCATCACCAGC	alt_292_fdr	60	53	65	34	50	49	47	56	56	34
TTCATATACGGGGAAA	alt_292_fdr	20	11	19	25	11	15	10	10	17	12
CGTGGCCACTTTTCAG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTATTTTATACAT	alt_292_fdr	18	14	23	26	13	23	17	20	14	21
GGAATCTCATGGTTTA	alt_292_fdr	50	45	60	33	45	48	35	46	46	37
GCCTAGTTAAATTACG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGGCACCCCCGGT	alt_292_fdr	46	25	41	37	30	34	28	24	39	27
CACATATATGCTATCT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TCACGCTTGGCCGGCC	alt_292_fdr	72	100	83	100	85	87	105	70	104	67
CTCTCCAATTTGCGGA	alt_292_fdr	2	3	7	2	10	1	6	6	1	2
GCTACTTTTTTGTACG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTAGTCAAGATTT	alt_292_fdr	27	23	28	36	29	15	23	20	25	15
ACGCAGCCATTAATCT	alt_292_fdr	30	40	39	49	40	29	41	23	37	35
CGCAAGACTGGACTTG	alt_292_fdr	30	25	35	23	45	33	25	36	35	16
CAGTTTTATAAGACCC	alt_292_fdr	146	156	207	144	145	158	140	161	147	137
TATGTCTTTCTTAGCG	alt_292_fdr	371	335	429	360	366	359	393	356	344	306
AACGGACACTGGAGAG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
CCTACTTGAATGCCCA	alt_292_fdr	0	2	5	0	5	0	6	3	2	2
GGGACCCCTAGACCGG	alt_292_fdr	24	27	39	16	26	19	33	16	30	22
GACGAAGACTTCGTTC	alt_292_fdr	11	11	16	19	24	21	23	19	14	21
ACCTTTTTAGACGAGT	alt_292_fdr	21	26	21	22	17	13	19	18	18	16
AGATGGTACTCTTGGT	alt_292_fdr	150	149	198	217	151	184	160	178	170	141
CGTGACCGTTCGTTTT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGTTTTCCGTTAT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TAGACGTCTGGTCCCC	alt_292_fdr	71	72	64	70	49	57	59	68	50	56
TGGTACATGGTTACGG	alt_292_fdr	19	14	12	17	15	15	7	11	11	12
TCCGGACTGTTCAAGA	alt_292_fdr	0	1	1	2	2	0	0	0	4	2
CATGTTGCTGTTTGTC	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TCCATGTTACGCTAGC	alt_292_fdr	7	4	10	5	5	7	6	8	2	5
TATCTTGATCCTCTTA	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
AGGATGGCTAGCGGCA	alt_292_fdr	49	41	32	40	40	25	51	40	61	26
TTTGTAGCGTCTCATT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAAAGAAAAGTCG	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
ATCGAACAGATTTGTC	alt_292_fdr	85	78	90	82	84	71	88	69	86	68
AATGTCATTTCCCCAT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGTTGCGAACTAG	alt_292_fdr	27	28	21	36	34	30	34	23	22	32
ATCAGGCACTGAGGGC	alt_292_fdr	40	23	41	53	46	32	44	42	22	33
AACTATGATTTTTATC	alt_292_fdr	21	12	45	33	22	29	12	21	20	35
TTTCTACGCTAATGAT	alt_292_fdr	11	4	12	5	4	6	9	5	12	9
CCCCTCTATTGACATA	alt_292_fdr	49	38	68	55	68	50	68	55	42	44
ATTGCGGCTTATACTG	alt_292_fdr	15	17	29	18	17	30	13	20	16	19
GCCCCGTTACAGCCAT	alt_292_fdr	35	27	37	20	29	30	26	20	18	33
GCGCATTATTCTCGGT	alt_292_fdr	89	65	110	76	61	71	76	104	75	58
CTATCACCCAGTGTTG	alt_292_fdr	23	25	30	16	26	24	13	26	22	30
TCATTCGAGGTCGGGT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
CCAGACTATTAGTCAC	alt_292_fdr	9	11	7	6	15	9	22	3	27	3
TCCGATTCTCGCTACA	alt_292_fdr	7	11	4	3	4	2	8	2	10	1
GTTTATGTATCTATGC	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
GGATACACTTGTCTGT	alt_292_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCTCTCAATATTC	alt_292_fdr	109	106	146	115	102	89	95	103	113	84
TTGGGCTTTGGCATAG	alt_292_fdr	8	4	3	3	7	2	5	9	6	8
TAACAACCTACGCCGG	alt_5322_fdr	167	158	191	156	155	144	183	180	162	153
TTGGGATGTGGCGTCT	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGAGAAATAGTGT	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
GGAGATGATCAGCTCA	alt_5322_fdr	17	18	19	19	8	15	18	18	16	13
TCCGATACGGATGCAA	alt_5322_fdr	111	107	108	99	76	72	79	88	74	70
ATCCGTACGTGTAGCT	alt_5322_fdr	73	61	76	62	45	63	69	56	53	45
GGTGAACAGCACGAGG	alt_5322_fdr	118	106	181	139	124	122	118	135	121	118
GGCTGTACTGTTAGGC	alt_5322_fdr	10	11	12	25	11	16	16	13	9	8
TCGCTTCAATCCAATT	alt_5322_fdr	34	28	49	40	30	29	32	41	33	33
TGTCTCATCATATAAT	alt_5322_fdr	22	32	26	24	20	37	22	28	21	30
AGGGGTTACGCAGAAC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTATCTACCAAAT	alt_5322_fdr	25	25	27	25	31	18	20	19	27	19
GCTGCTCGCTGTGTGG	alt_5322_fdr	35	23	24	30	21	28	20	30	21	33
CGGACCAGTGAGTTAG	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
CGACAATCGGTTGTGG	alt_5322_fdr	17	23	28	20	33	28	32	24	38	16
ACCGTACTTCCCTTCG	alt_5322_fdr	28	41	29	23	32	25	33	24	29	17
GGCCTCGTCCACCTAT	alt_5322_fdr	4	1	4	8	2	6	0	3	5	4
GGCAGTGTTGCCGTCT	alt_5322_fdr	24	25	36	27	25	14	21	13	16	17
CGGATTTACTCGTAGT	alt_5322_fdr	9	10	14	13	12	4	15	8	11	7
TTTAGAAGCATTCCCC	alt_5322_fdr	62	89	76	74	60	81	76	71	94	71
TGTATAAAGGTCATTT	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTGCGCCTCACCT	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTCATGCTTTAGT	alt_5322_fdr	11	16	14	13	16	10	18	11	21	14
TGGCCGCTGAAACTAA	alt_5322_fdr	63	41	51	65	36	50	33	41	41	28
TATGGTGGTTATATTG	alt_5322_fdr	99	52	118	93	74	86	63	83	57	84
GCAATCGCCAGCGGCC	alt_5322_fdr	35	46	50	40	43	29	42	40	51	41
CCTGAATGTCCACGGG	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
TAAACGCAGTCTACGT	alt_5322_fdr	41	31	56	44	41	45	39	26	30	32
CTCCCTGGTGCCCTTT	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
GATTAGTTATTTCGAG	alt_5322_fdr	29	22	20	24	30	20	17	24	25	14
CAAGTTCCCACGCAAT	alt_5322_fdr	187	110	217	164	110	155	147	157	114	159
GTACCACTGCGTCCGG	alt_5322_fdr	34	48	42	56	39	58	44	58	46	39
CATTGAATGTGAAGAA	alt_5322_fdr	128	94	127	109	122	110	106	112	105	123
CGCTGTGCTGCCTCCA	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCCGTGTTTAATG	alt_5322_fdr	43	29	47	39	41	46	31	50	37	39
GCGCCAGGAACGTGCA	alt_5322_fdr	104	92	148	99	70	118	107	107	94	100
TTCCCAGCCCTGCTCT	alt_5322_fdr	21	23	14	24	14	24	19	19	12	11
ATCTTTTTTGGATAAT	alt_5322_fdr	24	10	11	20	13	14	15	16	19	16
CTGCCATGCAATAATG	alt_5322_fdr	14	7	23	16	20	15	12	10	13	13
ACATTTGATATGACCT	alt_5322_fdr	14	13	11	19	8	7	10	10	9	3
GGTCCAATTCCGCATA	alt_5322_fdr	28	13	23	20	20	25	15	20	28	19
GTTTGTCTTTAAACAG	alt_5322_fdr	238	176	293	243	162	213	180	212	197	205
TCCTAGCAGCCATCTA	alt_5322_fdr	27	28	39	27	29	40	35	27	29	29
TGTCTATTTGTATAAA	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTCATGTAACCTC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGCTATTTACCAC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCGGCGCACTACG	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCCGATCCGAGAG	alt_5322_fdr	7	8	5	4	10	8	16	1	12	6
GTCGGACAATGCTCTC	alt_5322_fdr	10	8	12	4	5	9	5	10	7	7
TCATGACATATTGGCC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
AAGATATTGGCTGCAG	alt_5322_fdr	5	0	8	2	2	5	2	6	7	6
TGCCAATACATCCCCA	alt_5322_fdr	63	120	90	68	121	83	109	74	121	56
AGCTACTCAGTACTTG	alt_5322_fdr	28	27	55	56	30	34	49	24	43	28
TTGACCGAGGATACTC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCCGTTGTCGGCC	alt_5322_fdr	37	37	35	27	29	16	29	16	35	19
TGCGACACATGCATAT	alt_5322_fdr	49	54	56	47	65	59	39	46	36	45
CTCTAGTCTCCTTCTA	alt_5322_fdr	64	89	78	86	113	78	126	55	104	76
GCGGCTACGTCAAGGT	alt_5322_fdr	20	8	21	19	14	20	21	12	12	18
GGGTCTGTCATCGTTG	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCATACCGGCTGC	alt_5322_fdr	41	19	36	41	18	42	19	38	21	31
TTTTTGCTTTATTATT	alt_5322_fdr	11	17	12	13	12	10	14	11	25	5
AGCCAATACATCCCCA	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
AATTGACCCTATATGC	alt_5322_fdr	10	10	14	9	3	13	5	18	11	11
GGGCGATGCCTACGGC	alt_5322_fdr	31	34	32	26	31	49	21	34	24	39
AAAGTTCTCCTCAACC	alt_5322_fdr	61	79	62	67	97	70	85	54	88	41
ACTGTTCGGTTATAAC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
AACATGTGCGTGTCGA	alt_5322_fdr	10	5	8	12	14	15	14	9	8	9
CCCAAGCCATTATGTA	alt_5322_fdr	5	32	11	11	21	12	25	4	22	1
CATTGAACCCGCCTCC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCGGCTGGTTGTA	alt_5322_fdr	14	10	17	22	11	24	12	28	11	23
ACAATTTGGGATGGGG	alt_5322_fdr	9	4	8	8	6	11	8	14	1	8
AGGTCTCACTCTACCA	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
AAGTAGGCATGGTGCA	alt_5322_fdr	67	53	75	84	56	52	62	54	46	62
TCGCCCGAGAAATGTT	alt_5322_fdr	22	12	15	29	12	30	16	22	21	17
TCGTAACACTTTTCGA	alt_5322_fdr	28	22	30	21	18	18	26	28	25	22
TGGCAACCATTCAGCG	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCCTTCAGCCTTA	alt_5322_fdr	2	7	14	8	8	12	8	7	6	10
CAGCGGCAGATCTGGC	alt_5322_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTCCGTAGCTAGA	alt_5322_fdr	15	15	12	17	9	13	9	15	9	13
ACCTAACGACGTATAT	alt_5322_fdr	9	5	17	4	5	7	11	9	10	10
ACGGCTCCGGTCACAT	alt_5322_fdr	46	30	56	34	28	32	27	34	33	37
TTTTGGATACCTCGGC	alt_5322_fdr	29	26	39	39	34	30	38	27	43	31
TGCATAGAGTTGCTAG	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTAGGTGTTAAG	ref_3673_RC	7	14	4	3	20	4	9	5	5	3
GTCGGGAGGACCAGCT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TTAGACCCTGTATCCC	ref_3673_RC	1	0	5	0	1	1	1	0	1	1
GTCATTTTTTGTTGTA	ref_3673_RC	2	5	8	5	7	5	6	3	8	9
GCCCACTACCCTGGTT	ref_3673_RC	95	150	114	101	118	96	149	81	160	88
CGTTTCCCGTAACCAG	ref_3673_RC	86	150	132	83	166	110	196	90	201	102
TAACGTGTGTAATTTT	ref_3673_RC	6	14	19	14	9	13	15	7	20	14
GGTGTCTTGGAATGGT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
CGCATCTGAGATTGGT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TAAGGTACGCTCTAAT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TTTCTGTGCCGCCAAA	alt_3673_RC	95	142	107	94	168	65	150	108	155	64
AAAGTCCCGTCTATTA	ref_3673_RC	18	34	25	27	47	25	49	13	54	24
AGCGAGGGCGTTTGCC	ref_3673_RC	58	101	120	67	90	59	118	75	130	83
CGTTGCTCCTCAGGCG	ref_3673_RC	29	25	16	17	29	10	32	18	23	19
CACGGGCCTATCTGAG	ref_3673_RC	12	13	18	19	10	14	13	12	18	7
TTTGCTGAAACAATAA	ref_3673_RC	15	8	13	8	9	11	10	6	14	2
GTCGGGTTGGTCACTT	ref_3673_RC	71	116	93	80	115	54	116	62	133	57
TGTGGGTCTTATCCCT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TCTTTCGAGCTAGGTG	ref_3673_RC	82	132	104	76	133	75	111	79	129	66
CTCGCTGCCCCGGAGA	ref_3673_RC	12	31	13	21	29	6	27	13	32	15
CTCGTTAGCCCCAAGG	ref_3673_RC	7	14	11	8	8	10	7	3	16	7
CGTCAACAGACACTAC	ref_3673_RC	49	65	62	24	78	44	70	45	66	35
AATACATTTATCCGTG	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TAATTTTATTTATTTA	alt_3673_RC	22	30	43	38	51	32	50	32	59	28
CGGCGTCATGTCTCCG	ref_3673_RC	3	9	9	3	10	12	7	11	24	9
GCGCCACGATCAGTAG	ref_3673_RC	1	1	1	3	3	1	1	2	2	1
AGCTCCAATGCCGCCG	ref_3673_RC	33	47	60	42	57	34	45	39	64	51
CTTTTATCAGATGTGT	ref_3673_RC	30	34	36	18	45	26	62	39	47	17
AACTCTACGCTTTGAG	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TTTCCGCTGCAACCCA	ref_3673_RC	41	41	31	30	45	22	40	19	46	20
CGGTTTATATTCACGT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
CAACGGTTGGTGTTTA	alt_3673_RC	76	106	82	76	108	79	117	71	117	90
CTCAAAACTGTGGCTC	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
AACTCTACGCTTCGAG	alt_3673_RC	184	335	232	179	265	161	309	158	309	152
TACACGTTGTAAATGT	ref_3673_RC	51	48	51	44	58	57	58	36	66	49
AACAGTCGTTGTGTCC	ref_3673_RC	11	6	8	6	13	11	9	3	16	8
GCTGCCATTAGTGCTT	ref_3673_RC	56	74	64	48	75	44	88	63	93	46
TAAGTCTCAACGGCTG	ref_3673_RC	23	40	37	29	32	19	41	21	45	27
GTACTATTCCCACCCG	ref_3673_RC	21	25	28	12	22	13	19	10	39	19
GCTAACCCTTCCCACC	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
TTGGCGGACGGTCTAA	ref_3673_RC	2	7	1	4	9	4	5	3	4	2
AGGTCGGGCCGGGTGT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
GGTAAGTTTCTAGTTG	ref_3673_RC	135	184	191	160	204	156	182	129	243	128
ACGTAAGTTCGCTCTA	alt_3673_RC	25	28	27	17	43	16	41	13	40	16
GTACTCGGCTCACCCA	ref_3673_RC	8	14	3	6	8	6	8	9	17	4
TTCGTTTTTCTCTGTC	ref_3673_RC	6	3	0	3	0	1	2	2	3	2
GTGGCGGTCTAAAAGG	ref_3673_RC	78	89	89	94	87	67	129	82	116	72
TACGGTAGTGTATAGG	ref_3673_RC	0	0	0	0	1	1	0	0	3	0
CAGGCTTTAGCCAGAT	ref_3673_RC	19	17	15	10	17	7	25	16	11	11
TGTAAACAGCGCCTTC	ref_3673_RC	13	35	27	20	36	22	29	16	36	8
GTGGATAGCCAGCGGT	ref_3673_RC	30	52	19	29	47	33	40	22	49	25
ATGTCCTTTGTCCTTG	ref_3673_RC	16	15	11	10	10	7	16	11	15	12
TAGGTTCCGTACCCCA	ref_3673_RC	15	21	22	17	31	17	23	16	21	19
CTTGAATTAAGAGGTC	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
CAACATTTGTCATGGG	ref_3673_RC	7	17	10	10	23	11	17	5	17	10
AAAACTTGCACCTATG	ref_3673_RC	132	173	152	148	189	136	220	122	251	121
CCGGGTCTGCAGGTCC	ref_3673_RC	0	0	0	0	0	1	0	0	0	0
TGAACGGATCCACTTC	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
GATGCCGGTGCGGAGG	ref_3673_RC	17	30	17	11	22	20	23	13	28	16
CTTCCGTGTTTTGAAA	ref_3673_RC	18	24	23	18	14	23	14	18	38	22
AATCCTGGGCAAGCAC	ref_3673_RC	30	47	23	46	59	28	42	28	38	21
ACTCGAATGGTTTATA	ref_3673_RC	136	177	137	106	198	130	188	111	199	124
AGGTAAATGACAGCCC	ref_3673_RC	7	10	11	6	12	3	6	9	7	9
TCGCGCTTTACGCACT	ref_3673_RC	37	40	26	42	42	34	56	21	51	32
ATATTGGCTCCATTAA	ref_3673_RC	13	32	27	13	24	19	31	14	26	12
GTCTACTGTGACCATA	ref_3673_RC	107	184	95	75	172	73	194	60	221	72
CAAGCACTTGTACTGT	ref_3673_RC	31	50	45	31	60	36	86	42	67	31
ACACAGCGCTTCACTG	ref_3673_RC	12	9	8	7	13	4	5	3	13	4
CCGAATGGTACCCGTG	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TAACCGGCCCTTTGCA	ref_3673_RC	44	70	64	41	59	38	66	56	69	39
CAGCACATTGTATACG	ref_3673_RC	4	4	4	7	19	3	14	11	19	8
CGCCTGGTAATGACGA	ref_3673_RC	10	2	4	3	11	8	9	5	3	5
CGTCGTCAGCGTTGCC	ref_3673_RC	12	16	23	6	20	14	22	12	15	5
TATCACGCAACTAATG	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
GATCTTGCTCTTGCTA	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TTCTAAAATTTCAATT	ref_3673_RC	7	10	10	4	11	12	15	4	13	11
GTGAATCGCACCATAA	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
TCTTTAGGTCTTGACA	ref_3673_RC	86	102	87	90	137	73	127	87	128	89
AGTACGGGTGTCAAGG	ref_3673_RC	7	17	10	10	27	9	23	13	9	10
GGCACTCGGATTTGGA	ref_3673_RC	12	11	12	11	15	5	17	9	21	19
GCCCGAAACATATGGT	ref_3673_RC	3	0	3	1	3	1	0	0	3	1
TGGTTGGTTATGCGGT	ref_3673_RC	23	22	33	16	31	14	32	22	36	16
CACCGATATCTTGTTT	ref_3673_RC	9	18	5	4	9	4	12	5	8	5
AGCCGTAATATAGGAC	ref_3673_RC	8	8	12	8	10	2	7	6	14	2
AGTTCTTTGACGTGTT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
CCACAGTTATTCTGTC	ref_3673_RC	45	84	45	37	65	52	91	40	104	32
CCGTCCTGATGTGTTG	ref_3673_RC	34	67	44	48	59	31	87	33	67	33
GCAATCGTTCGCATTC	ref_3673_RC	6	19	8	5	15	13	19	6	14	13
CCAAGTAGGCAGTGTC	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
CAGTAACGAGAAGATC	alt_3673_RC	106	153	135	132	157	116	146	110	184	123
TGTCGTCAGAATGGAT	ref_3673_RC	29	52	28	38	44	16	58	25	45	25
AATACTGATTCTACGG	ref_3673_RC	72	111	85	93	117	63	106	59	97	64
GAAATGCGTCTAACGC	ref_3673_RC	19	24	28	18	23	17	32	16	24	12
CTTTGTAGGGCGCCCG	ref_3673_RC	8	11	14	10	13	6	11	5	7	2
AACTGCTCTCTTCGAT	ref_3673_RC	0	0	0	0	0	0	0	0	0	0
AAGGCCCTGGCCCCTT	ref_3673_RC	34	31	17	19	37	19	30	30	35	15
TCATTGGTCATGGCGT	ref_3673_RC	29	28	26	30	36	22	41	17	32	19
CGGCCGTCTCACGCCT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
CCATGTGTAAAGTAGG	alt_169_negative	0	0	0	0	0	0	0	0	0	0
TTTCGGATCGGGCTAC	alt_169_negative	2	1	7	0	1	2	5	2	6	0
CAGCTTAGCCTGGCGA	alt_169_negative	0	0	0	0	0	0	0	0	0	0
ACCGGTGATTCATCTT	alt_169_negative	1	6	1	0	6	2	4	0	0	1
TCCGAAGTCGCTGCCT	alt_169_negative	0	12	4	6	5	4	7	0	10	3
TAAGGCCCTTGCTTGA	alt_169_negative	0	0	0	0	0	0	0	0	0	0
ACTTTTATTCTCTGGC	alt_169_negative	12	31	23	20	25	17	26	11	18	19
TGCAAGACCTTTTTTA	alt_169_negative	1	7	4	3	5	9	0	2	7	3
TTCGGTTAACAATGAG	alt_169_negative	0	0	0	0	0	0	0	0	0	0
GGCGCGGTTCCCCACC	alt_169_negative	9	19	12	17	21	20	17	13	27	19
TATCAACCCATGCCAT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
GGGGATTGGGTAACCG	alt_169_negative	24	37	39	29	35	21	42	17	34	14
TATAAACCAATTATTT	alt_169_negative	8	30	25	15	22	20	23	12	22	8
GCTTAATTCACACCAA	alt_169_negative	0	0	0	0	0	0	0	0	0	0
GGACATTCATCGTAAC	alt_169_negative	3	0	1	0	1	0	0	1	0	0
TTTTATCGTATATCCA	alt_169_negative	0	0	0	0	0	0	0	0	0	0
GTTCTCGTCCATTGTA	alt_169_negative	14	20	20	22	23	16	17	16	21	14
TCTGGTATCCGAGCTT	alt_169_negative	14	14	13	16	13	13	19	12	13	12
CTCGCATGAGCGAAGT	alt_169_negative	3	9	4	1	9	6	6	3	6	4
ACGTACTATTGCCCCT	alt_169_negative	17	28	17	19	20	23	34	15	26	20
CTCTCAGTAAAGCTAT	alt_169_negative	15	36	34	18	36	19	29	27	33	16
TGACATTGGGGGTATA	alt_169_negative	0	0	0	0	0	0	0	0	0	0
CATTTTCGTGCCAATC	alt_169_negative	34	49	50	36	46	36	47	26	59	36
ATGGTGATTCTCTTAA	alt_169_negative	2	11	12	8	8	7	16	7	13	6
ACACTAGCTGTTCGCC	alt_169_negative	9	17	12	7	17	8	8	10	19	4
GCTCCTTGTGGAACCG	alt_169_negative	2	6	3	4	12	5	11	0	7	6
AGATAAGCTCTGGTTG	alt_169_negative	0	0	0	0	0	0	0	0	0	0
CTCACACTGCTTGTAT	alt_169_negative	18	20	23	13	25	18	28	9	32	15
CGCAGGTGTGGGGCTT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
TTCCTGGATATCCCCG	alt_169_negative	0	7	2	1	9	8	8	2	9	6
ATGAGCCGTCAACTGG	alt_169_negative	4	13	5	10	11	8	13	9	19	7
CTTCGTTACGGTCGTT	alt_169_negative	2	1	1	3	0	0	2	1	1	0
CCGTGATCCGCGAGGT	alt_169_negative	12	15	17	7	13	16	26	11	16	11
TGTTTTAGTTGCAGTT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
TTTTGACTTGGAAGAC	alt_169_negative	33	59	41	46	55	32	69	40	57	32
TGCGATCTCGCAAATT	alt_169_negative	3	6	5	7	4	7	5	5	4	2
GGTTGCCCACTTTGAC	alt_169_negative	6	14	9	14	13	16	27	15	19	8
ACGACTGAAAGCTTCG	alt_169_negative	0	0	0	0	0	0	0	0	0	0
TCTTTGGCACAAGGTT	alt_169_negative	11	8	12	5	7	9	9	5	10	6
ATCAGGGTCTAAGACT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
ATACCAAGATCCCACT	alt_169_negative	4	4	6	2	1	3	7	0	4	3
ATACATACTGAACCCC	alt_169_negative	5	8	9	8	8	8	7	8	8	3
TGATCCTCTGCAACGA	alt_169_negative	7	9	7	9	7	8	11	1	14	1
ATGTCAGTCGGCACTT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
GCGCTCTTACACATGT	alt_169_negative	7	11	9	7	20	6	16	6	10	7
TGCTCGTGATCCGGTC	alt_169_negative	12	16	18	11	12	14	16	5	20	19
AGACCGAAAGATTTCC	alt_169_negative	3	7	5	3	7	7	7	8	5	9
GTTTGCGGGTAGGGAC	alt_169_negative	3	3	8	4	1	6	6	3	3	5
CTGCCTATCGCGCATT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
GCGACTATCTTTTCAA	alt_169_negative	40	44	45	35	53	33	57	39	49	29
ATTAAGACTTTTGTCC	alt_169_negative	5	6	5	7	5	3	9	5	4	1
TGGGCATTTGTGTTCT	alt_169_negative	3	11	7	4	14	13	19	2	12	6
TCGCCCTCCCCCAAGG	alt_169_negative	45	50	41	34	46	32	51	44	76	34
TTATTTAGTGTCACAT	alt_169_negative	0	0	0	0	0	0	0	0	0	0
AGGTATCCAGTCGTCT	alt_169_negative	7	7	4	4	16	5	9	4	3	2
ACGTTCGTTCGAATAA	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCTTAGACTTCAG	alt_4486_fdr	58	68	78	63	77	68	86	68	67	55
GTCGATATTTTCATGC	alt_4486_fdr	154	152	165	140	123	125	191	118	181	122
ACTCACCTTTGCCCGT	alt_4486_fdr	3	15	9	3	21	0	13	2	16	2
TTCTCTGCTGAGGATC	alt_4486_fdr	47	62	71	56	48	52	59	46	78	39
TTAGCGTTTAGTACTT	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTTAGATTTGGT	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGGAGACATCTGG	alt_4486_fdr	61	91	91	66	79	75	78	66	82	44
TTCGGTTTCAAATGTG	alt_4486_fdr	12	19	17	8	11	7	15	11	11	18
CATTAATATAATGCGC	alt_4486_fdr	20	30	26	32	35	18	26	21	20	13
TTTGAAGAGAGCCCTG	alt_4486_fdr	26	22	29	18	11	19	19	22	31	20
TTTAGATGCGTAAATC	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCTCAGATGTCC	alt_4486_fdr	23	27	33	25	29	32	31	28	31	28
CCTTAATAGTGAGATT	alt_4486_fdr	16	7	4	13	9	8	6	6	9	7
TGTCTTCGTGCTTTTT	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
TAGCATCGGTAAGCAG	alt_4486_fdr	21	22	25	36	28	17	37	24	39	18
TGGGGCTCGGTTATAG	alt_4486_fdr	43	67	49	49	60	53	60	55	55	49
TGGCAAGTCGATAACA	alt_4486_fdr	28	27	51	35	34	25	23	25	22	24
CGAAATGTGATTGTCA	alt_4486_fdr	29	25	28	29	22	18	47	17	42	21
GCTTTGAAGGTTTCAC	ref_4486_fdr	220	242	240	225	236	221	223	191	260	192
GCTTGTATAGTAAGTT	alt_4486_fdr	7	8	11	3	10	9	8	6	12	8
TAGATGAGTTATGAGT	alt_4486_fdr	17	18	19	12	11	16	28	6	15	10
ATCGATAGTAGCGTGA	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGTAAAAACTCCT	alt_4486_fdr	1	2	2	3	3	4	8	6	7	4
GGTAATTGCTTTGTCG	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCATCAGGTTGTA	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
GGATGTTAACGTATCG	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTCCCGGAATTTT	alt_4486_fdr	56	37	55	50	59	48	57	52	78	43
TGGTCTGTCGTTAGTC	alt_4486_fdr	16	16	13	16	12	13	11	14	20	18
TTCTTGGTTAATACTA	alt_4486_fdr	28	31	33	33	31	38	26	29	35	37
CGCGGAGGTATTTTGT	alt_4486_fdr	23	40	33	43	39	37	55	32	45	28
CCGGCACCTCCCCGGT	alt_4486_fdr	20	57	26	19	49	22	68	11	67	16
AAGCGGCCCCAACATC	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
CACCTGATTTGCGAAC	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
CATGTGTCCGACTTTC	alt_4486_fdr	53	58	79	53	53	63	72	61	61	51
CCTATTGATTAATACC	alt_4486_fdr	41	49	57	62	61	47	51	52	67	37
AGCCAGACTCTTATTT	alt_4486_fdr	86	123	116	113	136	73	104	79	135	82
CTCTAGTGTATTCGTC	alt_4486_fdr	128	184	171	148	239	134	213	145	191	110
TACTCGTACCCCCGGT	alt_4486_fdr	27	63	37	26	52	39	42	21	61	25
CTTACGAATACTGTGC	alt_4486_fdr	53	76	72	79	63	71	61	68	67	54
AGTGGGCTATCGATCA	alt_4486_fdr	51	83	66	49	76	55	57	64	79	52
CGATAAATTAGGCTCG	alt_4486_fdr	57	76	61	74	93	56	74	76	93	55
TTGTCGTCCAGGGAAC	alt_4486_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTATGCATAGCGT	alt_4486_fdr	67	61	64	63	84	64	67	64	81	58
AAACAGTTAATCGTAT	alt_4486_fdr	226	289	249	224	330	224	297	202	292	213
CTAATCCGGCATCGCT	alt_4486_fdr	65	64	81	67	58	58	56	74	59	55
CTTGAAACCTGGTAAC	alt_4486_fdr	12	13	13	13	16	13	9	14	13	6
GCAGATAGTTCGAACA	ref_4486_fdr	102	140	142	117	116	134	159	83	129	90
TACTATACTTAACGTA	alt_4486_fdr	13	10	6	8	15	4	10	5	8	4
ATGTGCCGTGGACATC	alt_4486_fdr	26	58	36	35	35	29	34	33	46	25
TTGTCATGTTCACTTT	alt_4486_fdr	114	100	130	100	138	90	123	84	106	86
GCACCCTAAAACAGGT	alt_5861_new	49	42	62	40	54	35	62	47	70	41
CTGGCGTTTCAGTAGT	alt_5861_new	18	11	7	11	18	9	16	9	17	14
GGCCCGCGGTCATCGC	alt_5861_new	8	7	9	10	6	4	7	2	10	6
GTGGTAATGAAGGATT	alt_5861_new	21	25	30	11	19	18	33	21	13	12
CATCCCGCCGAGTTTT	alt_5861_new	11	26	18	16	17	17	26	10	13	9
CCAACTTATCCACCGA	alt_5861_new	19	15	20	27	25	22	25	17	33	16
TGCGAATCTTACAGAT	alt_5861_new	55	53	57	42	67	38	64	35	70	36
CAAGTCTTTGTTCGCG	ref_5861_new	40	45	43	29	39	29	53	23	44	25
GGGAGTACGATCTTAT	alt_5861_new	178	255	216	207	250	192	273	166	258	202
CGTGAGGTTGGTGGCA	alt_5861_new	26	44	29	31	37	16	37	31	43	37
GGTATGGCAAACTCAG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
GATGTAGAGGATGCCG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
ACATCGATGAGTTTGA	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TACCCGCTCGGCCCCT	alt_5861_new	8	16	11	4	18	8	18	7	14	8
CCGCGTATGGTAGAGG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TCTATTATGTTCAGGT	alt_5861_new	39	60	41	33	54	42	68	37	78	29
TTTACGTGAAGCTATT	alt_5861_new	101	133	131	86	139	85	151	101	173	91
ACTCTTTGACCTTTAT	alt_5861_new	0	0	0	0	0	0	0	0	0	0
GGCGGAATGCTGAGAT	alt_5861_new	29	37	26	34	28	25	41	16	40	21
CCTCTTTCATATCACC	alt_5861_new	58	58	53	43	44	39	76	48	67	32
CGATGACCCCTAGATT	alt_5861_new	8	10	10	8	12	10	10	6	10	6
TGTTGTGCTTGATTCG	alt_5861_new	0	5	4	1	3	2	0	0	2	0
GCGTAGAGGTCCGATC	alt_5861_new	65	62	65	51	83	55	76	46	77	48
GTGGCACATGCTCTGG	alt_5861_new	18	25	35	21	21	23	21	22	25	17
TCCCGGGATACTCATC	alt_5861_new	10	13	5	11	7	11	11	3	8	5
ATCACCTCGAGGCCTT	alt_5861_new	1	2	0	1	0	0	8	2	2	4
ATCAGCCCGCCACCAG	alt_5861_new	6	6	9	4	6	4	7	1	9	4
GAAATGTGCCACGCAG	ref_5861_new	102	101	95	88	77	66	120	72	101	59
AAGAGGGGCGTCACTA	alt_5861_new	137	226	179	174	178	172	233	141	256	148
CTTTTGATACACGAAT	alt_5861_new	97	117	113	97	129	82	127	90	99	91
TTCAAATGAGGAATAA	alt_5861_new	3	9	4	3	9	2	5	0	1	1
CGGCCTTCCAGGGACT	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TATCCGTCTGGTGTTA	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TCGCCCTGTATGTCTA	alt_5861_new	4	2	5	1	3	1	11	3	1	0
GTATGTGTAAGATGCA	alt_5861_new	0	0	0	0	0	0	0	0	0	0
GTGACCTAGCTCATCC	alt_5861_new	30	44	20	31	44	26	55	25	54	27
TTTTGATCTGAATGTC	alt_5861_new	29	17	18	24	27	25	39	15	31	10
ACTAAAGGAAATTTCT	alt_5861_new	21	24	24	22	25	19	22	21	24	14
AGTACAAATTTCTATG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
CTAGCAAAATTGTAAA	alt_5861_new	23	52	41	18	29	32	47	21	47	41
GCACCCGCAGCTCAGT	alt_5861_new	35	43	37	37	46	38	52	40	53	25
GGTTACTAGGCACAGT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TGGGTCATCATCGGGC	alt_5861_new	0	0	0	0	0	0	0	0	0	0
ATGTCTTTACCAGCCA	alt_5861_new	32	36	33	37	50	28	53	35	53	34
TAGAAACATTGGTCGT	alt_5861_new	9	13	11	13	10	9	14	6	15	8
CAGTGGCTCTTACATG	ref_5861_new	13	27	10	11	14	9	19	16	18	9
CCGTCGTGTAAGCCGC	alt_5861_new	27	27	22	38	39	18	44	13	39	19
GGGACAACTTTCCTTC	alt_5861_new	3	8	1	7	3	2	3	4	1	1
TGAAATGTTCCGACAG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
ACCAGGCATATCGCAG	alt_5861_new	40	46	40	33	55	35	59	39	70	31
GAGATTTGCGTGTCAG	alt_5861_new	85	147	103	103	140	88	129	74	142	61
GGTATATGCCAGTTAG	alt_5861_new	33	46	34	40	37	33	43	35	36	40
CCCTGGAGAAGACGCA	alt_5861_new	40	64	52	58	53	41	70	38	64	33
CCGTAATTGCTTTCTT	alt_5861_new	39	44	36	41	34	31	72	29	54	50
AGGAATCTTGTGAAGG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TTAATCAATGTCATCT	alt_5861_new	16	24	12	22	15	19	24	9	30	14
TTCGGATGTTTTGTCT	alt_5861_new	8	13	9	15	10	13	13	14	14	5
GTTTCCGTAATACCGT	alt_5861_new	25	44	34	25	31	25	42	25	50	19
TACATTTGGGTGGTTT	alt_5861_new	0	0	0	0	0	0	0	0	0	0
CCCCCGTAGTGTCGAC	alt_5861_new	22	20	26	20	22	6	23	18	17	14
ATCGGGTCTTCAACGG	alt_5861_new	21	44	36	24	28	15	35	29	33	23
CTCTTTATGAACCCTG	alt_5861_new	51	63	63	27	72	48	63	28	76	32
GGATTCGATCGCCAGG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TGGTCTATTGCAATAC	alt_5861_new	1	0	0	0	0	1	1	2	1	0
TCGGGGGCTTTTCTCT	alt_5861_new	7	3	3	2	6	2	0	1	8	4
TCTGTGGGCCTTTTAT	alt_5861_new	8	9	11	12	10	4	13	9	16	10
ATCGATAGGACAGCTA	ref_5861_new	41	40	41	37	53	37	39	34	46	35
TGGAGTTTTGGTGCAG	alt_5861_new	1	3	2	0	2	1	2	0	1	0
AAATAAGGGCCCCTAC	alt_5861_new	30	39	37	22	32	16	27	37	23	26
CTGGGTCTGCATCCTG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TCATTACATAGGTATT	alt_5861_new	13	22	17	13	17	13	19	11	13	9
TTTGCTACTAGCATGG	alt_5861_new	35	41	34	36	53	23	29	40	46	25
TACCTGTAGTTTGGCC	alt_5861_new	34	80	55	74	69	68	93	64	86	49
AGTTTAACCCCTCAGC	alt_5861_new	0	0	0	0	0	0	0	0	0	0
GCATCGGGTCGTTTCT	alt_5861_new	8	12	8	8	8	1	15	5	14	10
CGACCCGTCTTCCAGT	alt_5861_new	31	49	34	34	57	32	44	40	55	29
ATCTTTTTCCAATTTT	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TGGCAGCTGTACTAGG	ref_5861_new	9	3	14	2	5	1	8	7	6	6
TAAGATTTGTGGCTCT	alt_5861_new	0	3	2	1	2	0	4	3	1	2
TGGACGCAGTGACTGG	alt_5861_new	29	47	35	31	33	22	48	40	38	22
CCTTATGGTGGGAATC	alt_5861_new	44	57	56	48	59	48	57	57	67	27
GGAAACAACTGCACGC	alt_5861_new	2	6	3	6	6	3	4	1	1	3
CCAACTGCCGATTAAG	alt_5861_new	0	0	0	0	0	0	0	0	0	0
CGCTCAATACGCTAAA	alt_5861_new	37	56	62	48	57	56	61	44	68	36
ACAAGGCGCGGGCCAT	alt_5861_new	102	89	99	113	96	85	88	93	118	76
TGACCCCTACGTCCCC	alt_5861_new	7	7	10	10	17	12	19	7	25	7
TTTACATTCTCCTCAA	alt_5861_new	0	0	0	0	0	0	0	0	0	0
AACCGACTACCGATTG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TGTAAACATTGATGAG	alt_5861_new	26	29	23	24	25	26	27	21	25	22
CTTCTGCAAAGCTTCT	alt_5861_new	17	31	42	25	24	20	37	26	38	31
ATACTTATCACCTTAA	alt_5861_new	4	16	10	3	12	5	8	8	10	0
AGGCCATGATGCATGC	alt_5861_new	19	21	16	14	27	16	22	14	30	14
CCTAACATCAGCCTAG	alt_5861_new	23	43	30	28	37	21	48	18	36	10
CAACTCGAGAATTTTT	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TAGTCCTAAAGATGAA	alt_5861_new	0	0	0	0	0	0	0	0	0	0
GTCAGGATGGGGTGGT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TCTTGGAGATGCAAGA	alt_5861_new	0	2	3	2	6	3	2	3	10	1
GTGTACTGCCTTAAGC	alt_5861_new	15	27	21	13	15	14	18	6	26	6
TGCGAACGTTTGAGCA	alt_5861_new	0	0	0	0	0	0	0	0	0	0
TAGCTACTTCTCACCG	alt_5824_new	48	88	59	62	79	42	77	38	75	46
GAACGTATTGTTGTGT	alt_5824_new	17	60	31	31	67	26	61	18	62	10
CTTTGCCATCTTAGCG	alt_5824_new	6	17	11	6	8	6	11	1	20	3
GGGGTAGCAGTTTATG	alt_5824_new	0	0	0	0	0	0	0	0	0	0
GTTTCCTGTATAAAAC	ref_5824_new	0	0	0	0	0	0	0	0	0	0
GCGTATGATTTAGAGA	alt_5824_new	62	95	75	64	109	51	110	45	104	46
ATTTGTACACCCCGGC	alt_5824_new	1	17	4	2	27	3	26	0	19	3
TACGGTTAGTTAGCCA	alt_5824_new	0	0	0	0	0	0	0	0	0	0
CGCAACTTACCCACTT	alt_5824_new	6	7	8	3	14	1	8	0	8	4
GTTCGTAAGGCCTTGT	alt_5824_new	0	0	0	0	0	0	0	0	0	0
TCCTGCGCTAAGCCCC	alt_5824_new	11	11	9	11	18	14	15	12	20	2
GTTGTTGACTTGTTCG	alt_5824_new	19	40	20	20	42	18	43	16	45	14
ACACAGCGCGAGCTCC	alt_5824_new	37	56	47	40	77	37	47	37	66	31
CACGCCAGCGTAACAA	alt_5824_new	60	95	84	89	120	63	131	73	132	58
TGCGATTCTTTATTGC	alt_5824_new	26	49	55	26	37	30	62	26	31	24
CCTAAATACTGCTCGT	alt_5824_new	2	12	9	6	8	5	4	8	7	4
CGCGTTATGTTCTGTA	alt_5824_new	151	266	163	135	264	138	268	107	273	148
TCAAGGCTACAATTTT	alt_5824_new	11	16	14	6	21	10	17	4	23	13
GTGATAGAATCGGTAA	alt_5824_new	0	0	0	0	0	0	0	0	0	0
ATTGGCCGATCGGAAC	alt_5824_new	0	0	0	0	0	0	0	0	0	0
TGTAACCATCTGGGTC	alt_5824_new	30	54	30	29	51	25	35	21	69	21
TTTTGTTACTGATAAT	alt_5824_new	9	24	11	12	15	11	11	2	12	9
GGCTTCCTAGTTCCAC	alt_5824_new	37	49	44	48	43	35	46	28	42	33
ATATTCGTACTCTAGA	alt_5824_new	0	0	0	0	0	0	0	0	0	0
CGGCAAAACATTTCCG	alt_5824_new	0	0	0	0	0	0	0	0	0	0
ATCGGCGGCCCATCAA	alt_5824_new	35	78	54	47	64	46	59	26	94	39
TGGGGGTAATGTTTTA	alt_5824_new	0	0	0	0	0	0	0	0	0	0
CTCCTTTTACTTTGCG	alt_5824_new	0	0	0	0	0	0	0	0	0	0
TCGGATTCTACTTATT	alt_5824_new	7	8	10	10	16	3	13	10	22	3
TAAGCATAATTAAAGC	alt_5824_new	0	0	0	0	0	0	0	0	0	0
CAGGGCATACGGTCCT	alt_5824_new	14	15	29	20	29	24	41	13	31	14
GATTGTCTATAAAAGA	alt_5824_new	5	3	8	4	3	5	3	3	7	6
ATGAATTACAGTGCAG	alt_5824_new	10	24	15	19	19	11	21	11	28	12
ATATCGTAGCACAGTG	alt_5824_new	66	92	80	53	106	47	101	53	118	54
CCCACGACGGACCTAA	alt_5824_new	62	106	52	29	105	52	100	44	125	45
TCGGTCAACATCTTTA	alt_5824_new	74	128	89	85	134	75	109	60	127	72
GGTGTTTTCAACTGTT	alt_5824_new	81	128	78	67	161	81	128	55	138	103
GGCGTTGCGCTTTTAC	alt_5824_new	23	29	19	28	52	35	43	18	35	20
GTCTAGGGGCGAGCAA	alt_5824_new	37	71	60	45	76	44	68	54	94	30
ATACGGTGATGACACA	alt_5824_new	11	11	16	9	12	1	11	7	15	7
GGTGGATCGTTTGGTT	alt_5824_new	26	36	24	17	31	7	37	18	29	14
CACGGCTCGAGTACGT	alt_5824_new	22	24	16	15	22	14	22	10	31	13
CTTTTCCAATCAATCT	alt_5824_new	67	85	75	52	94	72	99	76	110	54
AGGCGTAGCAAGTCTG	alt_5824_new	0	0	0	0	0	0	0	0	0	0
CCTCTAACACGCTTTT	alt_5824_new	25	39	28	38	38	31	47	25	39	29
GGTAACGACGCCCCGC	alt_5824_new	38	56	45	33	54	28	69	39	51	43
CGTACAGTTTTAAGGG	ref_5824_new	6	23	20	12	26	14	23	15	26	8
CTATAGGTAACTTTGT	alt_5824_new	23	38	27	16	51	17	32	23	40	19
TGAGATTTTTTTCAGT	alt_5824_new	0	0	0	0	0	0	0	0	0	0
CTCAAAAAACGTGTAA	alt_5824_new	17	27	8	16	26	10	25	11	21	11
GCTGGTGTGCGACGAA	alt_5824_new	23	32	40	37	32	32	48	25	30	23
TTGTCTTGTTCCCGCA	alt_5824_new	33	38	35	38	40	40	39	36	67	30
TCTTGGGTATATAAGA	ref_5824_new	0	0	0	0	0	0	0	0	0	0
TCTACTCTGTGTGGAC	alt_5824_new	20	25	31	35	41	26	37	12	49	17
CTGTACAAGTGTAGCG	alt_5824_new	49	94	47	49	87	48	88	48	88	40
ATGTATCAGCTAAACT	alt_5824_new	5	12	14	9	12	4	8	6	9	9
TTAGAACGACCTGTGT	alt_5824_new	24	50	29	36	58	38	62	29	66	23
TTCCGGTTCGGGATGA	alt_5824_new	5	13	20	7	20	7	15	5	13	13
TCGGGCCGATTTCAGT	alt_5824_new	31	46	28	29	44	25	27	22	32	21
GAGTCAATCCCCGTAT	alt_5824_new	32	130	35	33	165	48	132	30	161	34
CATTAATCCGTGCGTT	alt_5824_new	8	8	16	5	11	9	21	5	13	3
TTTTTTGCATCTTGCT	alt_5824_new	0	0	0	0	0	0	0	0	0	0
GACTTCGTTCCCGTTG	alt_5824_new	0	0	0	0	0	0	0	0	0	0
AGCGGGGTCTTGGTCT	alt_5824_new	0	0	0	0	0	0	0	0	0	0
TGGGGGTAATGTTCGG	alt_5824_new	18	32	24	21	36	24	45	14	44	25
TCTTGATCTCGATTGA	alt_5824_new	15	39	30	22	27	16	31	25	30	7
GATTTTCGTGGGTCTT	alt_5761_new	10	15	13	9	13	17	19	9	18	8
AGCGGACATAGGACAC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
CTTAGTGGGGCTTAGG	alt_5761_new	32	50	29	33	46	20	40	16	39	31
GAACTCCGGTATTGTT	alt_5761_new	17	32	27	23	50	18	38	21	40	26
AGTGGAGTCGTAAGCT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GAGTTGGTCCTGTTTT	alt_5761_new	9	17	17	7	11	8	7	6	10	5
TACGAGAACTTAGCAA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TACGCCCGAGGTTCAG	alt_5761_new	15	25	27	19	29	21	26	24	27	16
AGGCACCAATACCTAA	alt_5761_new	34	29	32	28	33	29	49	29	44	31
TTGGGTTTACTTGCCC	alt_5761_new	23	27	26	22	30	29	34	22	40	22
TCTGATTCTCGGGACT	alt_5761_new	89	123	127	95	120	74	155	94	146	83
GTCTCATATCGTCAAC	alt_5761_new	80	116	87	63	121	47	99	68	139	66
CACAGGCTACATATCT	alt_5761_new	6	8	12	7	8	6	9	2	11	2
GGGGACGACTTTTGGC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GGATGACATATCCCAG	alt_5761_new	9	25	10	20	12	14	14	10	20	5
GCTACCGCAAAACGAG	alt_5761_new	35	56	37	36	52	34	50	22	51	28
CTCTCCGCCCTTCCTC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GATCTAATATGTCCTC	alt_5761_new	22	35	52	38	31	37	32	33	54	32
CTGTTTAAATCAAGGT	alt_5761_new	7	12	9	7	3	1	7	2	11	7
TCCTTTTGTAATCAAG	alt_5761_new	37	44	44	32	37	30	46	34	50	23
ATATTTTTCGCCGTGA	alt_5761_new	7	7	5	7	9	6	10	11	12	10
TGTTTGCTTTATGCAG	alt_5761_new	38	64	57	41	61	47	69	41	72	42
GCCGCCGGGTCATGCT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GCATTATAGCATTCTA	alt_5761_new	85	138	105	96	105	78	145	74	134	77
GAATTGCTAGTCAATA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GCTAGGCTCTTTTCAT	alt_5761_new	33	49	37	47	55	34	42	38	63	30
CAGCGTGGAGTCGCAA	alt_5761_new	12	7	9	4	16	5	13	9	9	7
AAATGGAATATGACGT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TCTAGCTACTGTGCAG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
CGATTTCATTCAGCAC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GCAGTATAAGTGTCCA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TTGGGCGCAGGTTCTA	alt_5761_new	22	28	22	18	36	18	28	24	26	23
CTCCCCGGGATAATTT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TGTTAAGTCCTCCATT	alt_5761_new	16	36	16	22	32	15	32	13	29	17
TGTCTTTTCGTTTCGA	alt_5761_new	16	19	26	20	12	21	22	9	9	6
TCGAGCTAGGATTCCA	alt_5761_new	4	9	13	6	10	4	10	8	4	7
TCAGCATGTACGGAAC	alt_5761_new	1	1	0	0	1	0	2	0	1	0
TTTCCCTTTCAATGTA	alt_5761_new	5	9	5	3	7	5	6	9	7	3
CATGACCAGTACGCCA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
AGTCCAAAATTGGTTT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TCCTATAACTTTCATG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GGTCTCCAACGATCCT	alt_5761_new	12	36	22	21	15	16	27	10	21	8
GTTCTCCTATTTCAGT	alt_5761_new	19	18	37	21	33	17	25	17	26	20
AGAGCATAGCCTACGC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
CCGCGCGTTTTTACTA	alt_5761_new	16	24	25	24	38	13	25	16	40	17
TGAGGACCGCATTATT	alt_5761_new	49	67	58	52	66	43	69	44	64	56
GTACTCCGCTGTGTTT	alt_5761_new	13	24	17	17	26	17	29	15	44	13
TAATCGTAAGCATTGG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GGTCCCTACTAGTTAA	alt_5761_new	13	17	26	11	18	8	28	27	30	8
GGGAGTATTAGCGGGC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TCATAATGTGCAGGCG	alt_5761_new	22	36	33	28	33	27	39	29	35	25
CTCTGATATTTCCAAG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GGTCGGGTCTCAGCAA	alt_5761_new	56	46	56	38	80	44	65	52	68	55
TCTTGATCTTCCTTCA	alt_5761_new	109	139	130	86	127	94	131	100	163	82
CACGGACAAACAGTGT	alt_5761_new	5	0	1	1	0	1	1	0	0	1
TTTCCTGGGTCGTAGA	alt_5761_new	26	56	43	37	57	44	45	36	43	24
TAAAGAATTGCCAGCC	alt_5761_new	11	19	17	13	24	17	19	16	17	10
TAAAGAATTAATATTA	alt_5761_new	330	453	389	357	452	352	499	324	498	297
GCTTTCCCTCCCCTAT	alt_5761_new	5	6	1	2	7	6	9	1	6	1
TGTGTACGCTCTCTTC	alt_5761_new	10	19	28	11	17	14	20	11	19	17
AATGCGGAGTCTATCC	alt_5761_new	22	29	32	23	34	30	36	28	31	16
ATTTCAACTCTGGGAG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TGTCCCTTGTCTGTAA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TCCCTAGACTTTAATT	alt_5761_new	9	15	16	16	27	10	20	15	20	14
TTTGAAGAATTAGTTA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TCCCTTGAATTTGGGC	alt_5761_new	77	91	71	89	110	60	94	59	116	57
GGGAAGCCGCATATTC	alt_5761_new	38	69	71	41	69	54	77	49	68	47
CTCTGTGGAGCGCCCG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GCGGCCTAGTAAAGCG	alt_5761_new	7	29	1	3	36	5	35	6	40	6
GCATGTCCCAGGATTA	alt_5761_new	3	9	7	6	14	4	19	5	8	11
CGATAGATTTTTTTGC	ref_5761_new	33	15	24	30	28	9	30	15	28	18
CCGCTTCCCCAGTTCG	alt_5761_new	21	32	18	19	29	20	27	21	31	14
AACTCGGATGCTCGAT	alt_5761_new	71	66	78	60	73	63	102	56	96	48
TGTATAGAAGGTTTAG	alt_5761_new	17	30	24	18	33	23	33	21	11	11
GATGTCCTATTAAATA	alt_5761_new	31	44	55	29	45	24	45	21	48	30
CTTGTTGTTCGGAGCC	alt_5761_new	29	40	23	27	36	30	59	23	43	15
CGTCTTCGCACAGTGC	alt_5761_new	6	23	3	7	22	3	24	8	14	10
TGATCAAAGGATATAG	alt_5761_new	18	27	21	19	20	20	28	14	32	18
TACGGGTAACACTTGG	alt_5761_new	12	10	11	7	13	3	16	8	4	5
GGCGACATCCTTTTCT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
ATTGTCTACTTTTTGC	alt_5761_new	23	39	23	21	47	17	25	12	25	20
CTCGGAAGTGATCTAT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GGAACGGATTCCTTGA	alt_5761_new	7	13	10	6	10	4	7	7	9	11
CCCCGCAGTTACAGAG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
CAAGCCTTAGTTCGTT	alt_5761_new	20	33	26	20	52	11	69	21	63	12
CGGTTCGCCCTAACAT	alt_5761_new	49	74	73	55	87	39	84	38	67	49
ATGCGGGGCTGCAGGG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
CCCGTGATATGCTCCT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TTATTAGATGTGGCCG	alt_5761_new	10	8	14	10	13	13	11	9	10	9
GATACACGAATTCCAA	alt_5761_new	16	28	21	21	35	12	20	14	33	8
AGGTCTCGTATTACAT	alt_5761_new	12	14	19	6	5	15	20	6	17	10
GTAGCACTGGGTCATG	alt_5761_new	9	33	15	7	23	14	26	12	24	7
AAAGGCATGAATTTCA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GCTCAAATATGATGCC	alt_5761_new	35	40	41	23	56	35	45	29	54	33
TTTTATCTTCGATCAA	ref_5761_new	13	8	11	15	10	8	21	6	11	6
ATAAGCGCGAATTTTG	alt_5761_new	0	0	0	0	0	0	0	0	0	0
CCGGTATTTACAACAA	alt_5761_new	13	22	25	23	8	12	17	12	17	13
AAGCTCAGGCTCCCCC	ref_5761_new	2	9	15	5	8	7	10	7	17	1
GTGCCTCTTTCACGAG	alt_5761_new	23	19	23	18	25	19	30	24	29	24
GATAAAGGTTCTCGCA	alt_5761_new	21	34	22	16	28	11	22	10	24	10
AGGTTATACCCTTTAA	alt_5761_new	8	7	6	1	12	3	7	4	7	7
GGATTATTGATGGTCC	alt_5761_new	17	25	31	25	28	24	41	28	43	19
TTCTCGCCGGACCTAC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
CATTGACGCCGCATGT	alt_5761_new	28	34	33	29	29	22	34	18	47	23
AGATTAATCATAATGC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GCAGCTGGCTATCAGA	alt_5761_new	17	22	26	15	21	7	14	12	24	7
GGGCACTTATCAGTTT	alt_5761_new	28	58	37	21	54	28	55	21	58	31
GAGCATTTTCACGTTA	alt_5761_new	7	4	10	6	1	4	6	3	2	7
TGTTTGCTTTATGCGG	alt_5761_new	11	16	7	13	6	5	13	12	18	6
GCCTTAGCGTCGTGTT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GCATGTGTGGAAATTT	alt_5761_new	6	5	6	6	4	10	7	5	4	13
TGTGTTTTTAGACAGG	alt_5761_new	16	21	12	10	17	9	23	8	23	9
TTTTGGTCTTGTCCTA	alt_5761_new	17	48	24	20	39	36	50	21	54	44
GAGGGTCGTTCTATGG	alt_5761_new	36	45	44	42	63	23	52	47	43	35
TTTCAACCAGTACTGT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
TTGGTTTCTGTGATTT	alt_5761_new	0	0	0	0	0	0	0	0	0	0
AGCTAGGCTGGATCGC	alt_5761_new	13	17	14	18	28	9	18	11	23	12
GAATTATAGCATTCTA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
AAAAGAATTAATATTA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
ATGTCGGTTCTAATCT	alt_5761_new	6	5	9	9	5	6	7	11	13	3
CCACGCGCTCGGGCTT	alt_5761_new	14	44	20	15	65	12	55	16	62	12
AAGTACCCGTAACAGC	alt_5761_new	9	26	18	10	27	8	24	15	12	8
TCTGGACCGCTTATGA	alt_5761_new	27	44	36	18	39	26	31	33	50	12
TTGCGTGTAATCGGAT	alt_5761_new	7	13	17	19	20	15	16	17	16	20
TTATGTCAGGGGCCAC	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GGATTTGCGGTCACGT	alt_5761_new	10	8	9	14	10	9	15	11	14	11
TACCGGAACATAGTAC	alt_5761_new	6	5	5	5	11	6	13	8	8	6
ACTAGGGAAGTCGCTT	alt_5761_new	16	18	13	17	18	12	19	10	15	16
GCGAGCTGCTTCCGGT	alt_5761_new	7	5	7	9	6	6	11	7	11	8
TTATTTATACACCGCC	alt_5761_new	11	11	18	9	20	16	14	7	18	9
AACCGTGGGCTACCTT	alt_5761_new	3	6	4	4	2	1	2	2	5	4
TGAGCGCGACTCTGAT	alt_5761_new	9	12	8	12	5	9	12	5	11	4
AGGGACATTAAATCAG	alt_5761_new	17	30	19	11	18	15	15	12	26	11
ACCTTAATTTCATGTG	alt_5761_new	38	73	33	33	52	44	44	24	51	19
CTGTTCCGGTACCCCA	alt_5761_new	0	0	0	0	0	0	0	0	0	0
GTGCAAGGCTCGTCGG	ref_5761_new	92	121	120	106	125	82	129	75	124	101
TCTATTCTTTCCATGT	alt_5761_new	10	19	17	12	17	16	16	14	15	8
CATTTGCGCCCCTTAG	alt_5761_new	58	60	59	33	51	29	42	35	60	36
TCCCGTCGCCAAGGAA	ref_5761_new	13	60	39	27	42	28	72	29	61	14
CTCAGGTCTTGTTTGT	ref_5984_new	13	32	20	8	39	6	25	2	51	12
ACGCTAATCAGCGGTT	ref_5984_new	50	100	64	50	115	62	125	52	121	58
ACCATGATTATATACC	ref_5984_new	4	6	6	5	8	5	17	5	7	7
ATGTTTCTGTAGTGAC	ref_5984_new	16	42	23	16	28	13	41	19	51	11
GAAAGAGGCTCCCTGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CCTTTGCCGCTTGTTC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GAAACTTCTATTGTCG	ref_5984_new	45	77	40	42	82	40	84	55	120	37
ATGAGTACGAGAGAAC	ref_5984_new	10	12	11	9	14	6	9	3	14	8
TCGGCGCTATGCTCTA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TTACTCTCTACTTGCC	ref_5984_new	12	18	14	16	21	11	36	11	33	7
ATGTTTTTGCGTGAGT	ref_5984_new	11	29	14	12	35	8	37	16	46	12
CTCTGACGTGCTAAGT	ref_5984_new	2	8	0	0	12	4	16	4	9	7
CGGGTGGTATGCGGTG	ref_5984_new	18	38	30	17	39	19	29	14	36	13
CTTGACCTTGATCTAG	ref_5984_new	1	15	4	5	5	3	7	7	10	3
GTACCTCGTTTCCGCC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TGCTTTTTCCCCGGGA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
AGCAGGGGACAATCAG	ref_5984_new	54	72	55	34	84	35	86	42	75	39
GGTCGTGTCTTAGAAA	ref_5984_new	9	19	7	3	13	6	13	4	22	10
GGCTATGCTTAATGCT	ref_5984_new	0	0	0	0	2	1	0	0	3	0
CACTGAACCTACTTAT	ref_5984_new	7	30	14	14	36	11	23	5	32	13
CGGTGTTAGCTAACGG	ref_5984_new	2	15	9	5	8	6	10	6	15	3
CCACATCATTAGTCAA	ref_5984_new	12	13	8	5	16	6	25	3	21	4
GCTAGCGCAGTAGTCG	ref_5984_new	25	41	21	15	58	3	45	8	46	22
GCTTTGCACTGTCGTG	ref_5984_new	12	40	21	17	38	15	33	14	28	16
CGGCGCTAGCACCCCG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
ATATATCTTCCCCCTG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GTTCCACCCAAGTCAC	ref_5984_new	8	44	14	8	28	5	48	13	48	19
GGGCTCTCGGATGCTT	ref_5984_new	43	100	73	49	93	46	132	52	104	48
CACGCCCTCTTATCTG	ref_5984_new	1	3	6	2	7	3	5	3	4	2
CATCGAAGGCAAAGCA	ref_5984_new	9	17	22	14	36	16	23	11	36	10
TGTATGCAAAGATGGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
ATAGTCATGTGTACCG	ref_5984_new	2	5	1	5	11	1	9	3	7	1
CGCGGGCGTCCTAACC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CGCAGAAGATGTATAA	ref_5984_new	0	2	1	1	8	1	5	1	3	0
AACCGTCAAGTATAAC	ref_5984_new	2	0	0	0	0	4	7	1	6	0
CAGTTTATAGGATCAC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
ACTCATATTGTCGGAA	ref_5984_new	19	25	6	11	28	12	28	10	26	10
ACAATTGTTGGGTTAG	ref_5984_new	5	10	7	8	15	8	16	3	10	6
ATCTGTCTTGTTTCCC	ref_5984_new	8	4	4	7	7	6	10	7	12	14
TGGTATTTAGAAGTAG	ref_5984_new	3	8	7	6	16	3	16	2	11	5
TTAAGGTGGGTGGTTG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GTAAGTCCCGACCCGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CAATAGTAGACTTTTC	ref_5984_new	11	41	21	16	44	16	34	19	38	10
GGAAGGGTTTTGATAG	ref_5984_new	4	4	3	3	8	7	5	2	6	4
ATTCTGCCGTTATCGT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
AGTCGGTCACCCCTCC	ref_5984_new	10	25	11	15	24	9	14	8	16	5
ACACCGTGTGCGAACG	ref_5984_new	37	56	41	35	63	25	83	25	85	39
TCTGTTATATAGTAAC	ref_5984_new	22	50	25	28	60	32	56	36	69	21
AGTAACTGAGTTTGTA	ref_5984_new	2	7	5	1	5	3	4	5	7	6
CGTTTCATCCGGAGTT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
ATCCAGCCACCCGATT	ref_5984_new	1	9	2	3	16	2	11	3	23	3
TAGTTGACCGGGCACA	ref_5984_new	3	17	12	8	20	8	15	6	16	8
CGTCTGTGAAATTTGA	ref_5984_new	4	3	2	2	11	7	10	6	8	1
CACGTTATATATCTAG	ref_5984_new	2	5	5	2	6	3	5	4	4	1
CATGGTCGAGGGATCA	ref_5984_new	6	6	2	8	10	6	9	2	6	5
ACATGTTCAGATTCCG	ref_5984_new	188	333	203	169	306	176	390	140	347	173
GGCCGTCGTTCCCCGG	ref_5984_new	12	39	16	13	26	14	31	15	24	14
TACGGTAATACAAGCA	ref_5984_new	4	10	14	6	9	10	9	6	14	6
TTCGGTAATCGTGTGG	ref_5984_new	12	23	14	14	21	8	22	17	32	11
TCCTAGCTCCTGAAAG	ref_5984_new	7	10	7	4	17	7	9	2	10	5
GGGGGCAAATATACTT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TTAGTCGCTTTCGCGG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GATGGCGACTCCACTA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GTCAGCCTGGACCTAA	ref_5984_new	21	87	46	38	90	26	72	27	77	29
GTAGAGTCTCCTGTTT	ref_5984_new	1	8	1	0	2	0	2	1	4	1
TGGGAACCCTTCGTCA	ref_5984_new	2	3	2	3	7	4	3	5	5	2
TCGCCCGTACCCCAGA	ref_5984_new	4	0	0	1	2	1	5	0	3	1
GGGACAGAATCCAATT	ref_5984_new	1	7	1	3	3	2	5	4	10	0
CTCCGTTCCACTCAGA	ref_5984_new	34	68	27	38	65	27	81	22	87	33
GTCTTTAGCTATATAG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TCGGTGCCGGTAGCGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GATTCGGGTTTGTCTT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CGCAACGGTTTTTATT	ref_5984_new	75	118	67	57	118	53	142	38	124	48
CTGTTTTCGTCCTTAT	ref_5984_new	25	50	24	19	65	30	67	24	54	26
CTCCTTCCTGATGGCA	ref_5984_new	11	33	12	12	34	12	28	17	30	7
AAGGGGTCTTGATAGC	ref_5984_new	3	12	10	6	10	5	13	5	9	6
TTATTTTATTAATGTG	ref_5984_new	3	9	6	4	23	7	15	7	13	6
TTATTTTTTTTGCGTT	ref_5984_new	23	60	30	29	66	18	72	22	66	23
AGGCACAGGTCAATGA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GCTTTTGCGATTCCTT	ref_5984_new	13	21	14	5	22	13	17	6	25	10
CCCGCTGTCTATTGAT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
ACTATGACTTCTGGCG	ref_5984_new	31	62	21	34	64	18	80	27	75	22
CTCCCCCGGTACGAGC	ref_5984_new	31	135	23	16	124	16	144	26	150	17
GAACACTTCACGTGTT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TTACTTCTGGGCCTAG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CCTGTTTGTTTTCTCG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
AATGAAGCCGCCTTAT	ref_5984_new	1	7	2	3	5	6	6	2	4	3
CCCCCGCTCTATTCTC	ref_5984_new	5	7	1	1	8	6	8	3	12	5
GATGGTTCAATCGCCA	ref_5984_new	10	18	13	5	10	10	27	7	24	12
GTTACCGTTCCTCCCT	ref_5984_new	1	0	0	1	0	0	1	1	0	0
GTATGTGGATGACACC	ref_5984_new	10	13	8	8	9	6	12	5	14	9
GAACGTGAGCCACTTG	ref_5984_new	3	3	0	0	3	0	14	6	6	1
CGTCACAGGTTTTCGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CGTGCTTGTCGACCAA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TAGTGAATGCACCTTG	ref_5984_new	15	41	15	13	29	16	27	15	30	9
TCCCTTCTGGGGGGAG	ref_5984_new	2	1	4	1	5	0	4	3	4	3
AGTTCCTCATGCATCC	ref_5984_new	12	25	15	14	12	7	21	10	24	10
ACATTGCAGCCTGATA	ref_5984_new	21	28	21	19	52	18	47	20	44	18
TTACTCCTTTATACTC	ref_5984_new	49	99	45	38	116	38	108	37	97	45
CTAGTCATCCTTCGCA	ref_5984_new	16	35	22	16	48	24	66	10	38	14
TACTGAACGTTGATTG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TTGTTGGTATGCTGAC	ref_5984_new	10	21	16	12	18	7	24	6	19	9
TACGTCTTGAAAATGG	ref_5984_new	11	28	10	14	30	14	27	10	21	17
TTACAGATGAAAATAC	ref_5984_new	33	44	27	18	49	20	50	18	50	17
TTGGCTGGTTCTTGTG	ref_5984_new	13	15	9	7	18	7	16	11	19	5
TTCCACAGTACTTTGT	ref_5984_new	8	17	8	7	11	6	24	8	19	6
TTTTTTTACACTCCTC	ref_5984_new	7	16	2	1	23	1	24	1	24	3
GGTGGCCTTTGGCCCA	ref_5984_new	17	62	34	28	61	24	72	27	50	25
TCACAGTATTGTTCCG	ref_5984_new	8	11	12	7	26	13	13	7	17	17
TATCTACCTGACCAAT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GGCAATTACTCCTTGG	ref_5984_new	8	16	12	9	12	12	27	8	11	8
CAATGCCGCTCTGTAC	ref_5984_new	0	11	7	3	11	2	18	2	15	2
GTCTAAACATCGCTAC	ref_5984_new	16	27	19	18	23	10	23	12	25	8
GGTGGGTTGGCCTTCT	ref_5984_new	6	8	7	6	14	7	12	4	23	5
ATATATTTTTGCTTGT	ref_5984_new	19	7	13	13	21	7	10	10	21	2
CTAGGGTTACCGTCGA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TCTCTTAGTATGTTTC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
ATCTTACGCAAAGAGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CCTATTCCGGTCAGGG	ref_5984_new	4	17	2	3	22	6	21	1	12	2
GCAAGTATAGAGGATC	ref_5984_new	2	9	4	6	6	1	6	2	9	2
GGTTTGTCAGCAACTA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CGGCACTCAGGCGAGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TTCGATGGCGCTGGTT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CAATGGATGGACTCAC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TTGCTATCTCGATCTA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
ATCAGGCCGAGCACTG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
AGTTTATCGTCTCGAC	ref_5984_new	1	4	1	0	1	5	1	1	3	1
GGAGCCGACGAAGAAA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GTTCGCTCATGCGATT	ref_5984_new	10	7	9	6	17	9	29	7	24	6
GGTTGCTACCGCACGA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CAGATCTAGTCCTGTG	ref_5984_new	6	13	3	0	26	1	17	2	22	0
CAATTTGTTTTAACTC	ref_5984_new	3	1	4	1	7	2	2	2	3	2
CTTCCATTTATGTTAG	ref_5984_new	0	0	0	0	0	0	0	0	0	0
GACAGCCATCTCGGAC	ref_5984_new	2	29	6	8	24	3	25	8	31	1
TGCAGCCCTTGTTTCG	ref_5984_new	8	14	8	2	20	4	13	12	8	3
CTGGTCGGTTATATTA	ref_5984_new	4	11	8	7	19	1	16	7	16	10
CGGCGCTAGCACCCCA	ref_5984_new	16	30	25	18	52	19	42	10	50	11
AGGCGCAGCCATGATG	ref_5984_new	91	152	68	77	148	73	154	72	166	84
AAGGGGTGATCGGAGA	ref_5984_new	0	0	0	0	0	0	0	0	0	0
TGAATCGACGAGGCTA	ref_5984_new	3	4	5	3	5	1	2	5	8	2
GATTGCGAACCCGGAA	ref_5984_new	38	70	39	40	73	31	63	41	81	40
ATCTACTCTTGGGACG	ref_5984_new	9	15	12	4	11	7	18	2	25	5
CTCGAGTTCTATCCGC	ref_5984_new	0	0	0	0	0	0	0	0	0	0
AGGTACCAGAAATCAT	ref_5984_new	0	0	0	0	0	0	0	0	0	0
CGCGGGCGTCCCAACC	ref_5984_new	177	379	205	207	426	170	418	192	401	175
AGCGTTGTAAGAGTAC	ref_5984_new	12	15	5	8	19	7	23	9	24	11
CCCGAGGCATACTCAG	ref_5984_new	3	1	2	6	5	0	5	2	9	1
TGTAATATCGCGACTG	ref_5984_new	14	21	14	11	34	15	32	14	34	14
GGTTATGGGCTATACC	ref_5984_new	9	22	14	5	26	11	26	18	28	6
GTATATAGCTACACGA	ref_5984_new	3	6	6	1	3	1	5	2	2	4
CGCATTAATAATGAGT	ref_1851_upstream	15	8	16	23	10	15	14	15	7	14
CTATACACTTTTTGAG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
CACGAGTTCTTCAATG	ref_1851_upstream	84	69	142	115	100	98	85	72	87	97
GCTTTTACAATTAACA	ref_1851_upstream	25	22	30	21	16	21	17	34	21	14
CAGATGCTCAGGGTCA	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTCCTTTTTGTTT	ref_1851_upstream	37	12	35	34	15	32	19	30	16	25
CTCGTCTACTCCTAGG	ref_1851_upstream	35	34	45	65	34	46	35	36	21	39
GGCGGTCGTACTTACC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
GATGCTGCTCAATCTT	ref_1851_upstream	90	46	122	87	44	67	57	92	57	72
CGTCTTCAACTGGTTT	ref_1851_upstream	2	11	9	9	5	4	7	6	11	6
AGTCGCAGGCCCCTAC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTATGCAAATGT	ref_1851_upstream	152	105	202	182	112	143	127	147	114	146
CAAGCTGTCGTACGAG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
AAACTCGGTTTGCTAA	ref_1851_upstream	271	160	352	278	158	240	191	243	149	233
TCCGTTAATTTATTTT	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGCTCACTGGTTC	ref_1851_upstream	7	1	5	6	6	10	1	3	3	9
TTGAGAATTGGAGTAA	ref_1851_upstream	16	10	21	18	21	7	10	2	20	12
TTGCCCGTAATAGAGA	ref_1851_upstream	2	2	4	10	2	3	3	9	6	5
CTTGGCGTTTCCCATT	ref_1851_upstream	35	12	29	32	21	25	17	19	12	28
AAGCGCTGACAACCAG	ref_1851_upstream	41	26	58	51	27	48	24	37	21	26
AGGCTCGTTTTAGTTT	ref_1851_upstream	30	15	47	36	20	27	19	39	26	22
GCTTTCACACCGTTAA	ref_1851_upstream	30	18	37	36	13	32	12	19	25	27
CCTGTGTCACAATGGG	ref_1851_upstream	49	29	63	55	29	48	34	41	30	42
CGAATGCGCTTTGGTT	ref_1851_upstream	208	141	268	257	155	233	151	170	166	226
ATACCTTTAATCCTGT	ref_1851_upstream	502	321	663	554	342	467	332	495	315	436
TTATACAACGCCTTTT	ref_1851_upstream	34	30	60	50	30	32	25	37	20	46
CCCCTGTCATTGGGGC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
CGACTTCTGCAGGCCT	ref_1851_upstream	85	42	88	78	45	59	55	76	41	59
AACAGTGTGTTCCATG	ref_1851_upstream	66	42	76	80	54	88	45	59	56	46
AAGCACGTGGATCTCA	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
CAATGCGTTTACACAT	ref_1851_upstream	90	70	119	106	71	87	91	110	86	76
TAAGACAATAGGTGGC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTGTCCTTGTATG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGACTATTCATTT	ref_1851_upstream	49	28	85	61	32	53	33	52	39	46
ATTCATCATTACGGAG	ref_1851_upstream	244	139	259	258	115	202	166	230	179	204
TCGAGTGATCATTTCT	ref_1851_upstream	219	97	253	238	111	188	124	195	132	167
TACCTTCTAGCACCTG	ref_1851_upstream	79	68	115	73	61	94	55	75	51	81
CGTACTCATAGCGAGC	ref_1851_upstream	20	20	29	33	16	20	15	25	13	18
TTCTTCTACCCCAGAT	ref_1851_upstream	88	77	128	101	104	104	89	104	107	91
TAAATCCGTATGATTG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTGCCTTATTCTG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGATCGGTTCTAG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTATTGGACCTT	ref_1851_upstream	79	48	79	79	51	93	44	75	49	61
ACGGCATTGACTTTCC	ref_1851_upstream	58	27	60	62	49	49	40	39	34	45
ACTACCAGGAAATTTT	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCCCAGATCGCAC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGGTCGCTATTGT	ref_1851_upstream	57	27	37	43	28	46	33	32	34	45
ATCATGTATTTAAACA	ref_1851_upstream	28	15	28	16	12	33	19	20	17	17
CTATATCAGACCATTA	ref_1851_upstream	117	71	149	139	84	113	80	122	95	111
GTCTTGTCCCCGGCGC	ref_1851_upstream	34	26	31	26	12	32	29	26	19	19
GGCCACTGTACGGGTG	ref_1851_upstream	10	12	11	23	8	8	25	7	17	9
CACGAGTTCTTCAAAG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
CTACATGGTCTCACTC	ref_1851_upstream	2	0	3	3	0	3	0	2	2	0
CTTGTCTCCCCGTCTA	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTGCCCATCACCT	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
ACGATCTCCACATAGG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCATTTTTCGAGG	ref_1851_upstream	153	85	217	178	87	148	91	137	96	128
GATGCCAGCAATTTCC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTTCATTCTGACA	ref_1851_upstream	38	39	49	46	30	38	32	45	35	50
CGTATCGTGCTTGGAT	ref_1851_upstream	41	13	55	65	37	31	28	42	33	29
TGTGTCGTCGGGGCAC	ref_1851_upstream	24	16	24	27	19	23	15	13	21	15
GTATCGTAGGTCCTCA	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTACTGCCTGCGC	ref_1851_upstream	26	25	46	24	18	35	26	29	20	29
GCCTTTTTAACCGGTT	ref_1851_upstream	77	46	107	71	58	66	64	69	47	69
TAACTGTTCGCGTTGC	ref_1851_upstream	48	10	53	36	33	58	20	42	22	39
CCAGTCCACTTACCAC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TCATTCCTAAATGATT	alt_1851_upstream	15	24	45	34	23	35	26	35	36	14
ATATTCAACAACTTCG	ref_1851_upstream	155	125	209	163	94	162	95	156	85	170
TCTCGTGAGCCAAGCG	ref_1851_upstream	52	38	50	48	29	51	28	61	29	44
GTCCATAGCTATTGTG	ref_1851_upstream	47	38	55	43	46	40	37	34	27	33
CGAAATCAACCGAGGT	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTTTTTTGTAGCC	ref_1851_upstream	70	47	104	91	46	73	52	76	39	78
GATGCTCATCTTCCCG	ref_1851_upstream	37	21	38	43	31	37	22	29	33	33
CCTAGATCAAGAGAAA	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTGAACATGAGCT	ref_1851_upstream	55	25	71	69	38	66	32	55	32	49
CAGACACTCCAGCCGC	ref_1851_upstream	37	37	60	35	37	35	29	30	35	39
GCAGTCTGAGAACCTC	ref_1851_upstream	367	311	472	407	278	375	317	391	317	347
CATCCACCGACGTGGC	ref_1851_upstream	90	66	74	82	79	52	66	63	62	71
TGATCGAATTTGTCAG	ref_1851_upstream	48	41	48	34	34	25	36	34	43	28
GTTGCTAGGTTGGGTA	ref_1851_upstream	23	15	33	28	19	21	24	26	25	29
TCATTGTCTGTTCAGT	ref_1851_upstream	19	11	19	31	7	13	10	23	10	5
TTACTCAAGCCTAATT	ref_1851_upstream	9	4	10	12	4	6	12	6	3	4
TATTCGGTTTTCAGTG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
TAATACGTTTGCGGCA	ref_1851_upstream	16	8	24	17	6	14	11	9	3	15
TTTTCCTTAGTAGACC	ref_1851_upstream	74	55	92	71	60	75	41	90	49	61
TATTGTCCCCTATAAC	ref_1851_upstream	140	87	174	140	84	128	94	152	78	133
CGCGTGATTACATGAC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCGGATATGGCTT	alt_1851_upstream	35	14	43	27	22	23	19	23	22	20
AGCGTGGTCGACCGGA	ref_1851_upstream	7	19	20	6	22	10	31	8	28	4
GAGGTCAGACATTCTG	ref_1851_upstream	38	23	43	38	16	34	29	34	26	25
CCTGTGCAACGTTGTC	alt_1851_upstream	36	24	42	39	24	29	30	34	25	25
ATGGAGTAATTTTCCG	ref_1851_upstream	138	54	119	142	44	97	75	101	76	94
ACTGAATGGTTCTGTC	ref_1851_upstream	44	17	53	27	31	33	25	39	41	26
ACTTTCTGGCATCAAT	ref_1851_upstream	116	69	128	85	66	80	69	81	69	85
TTGGGAATCAATCCAT	ref_1851_upstream	30	13	24	22	13	20	13	22	10	17
CAGGCCGGTGCGCTGA	ref_1851_upstream	4	2	7	7	2	2	3	3	7	2
AATGCCAACGACGGCG	ref_1851_upstream	137	67	171	132	82	108	65	103	66	112
ACTGTTCAGGCTGGTG	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTTGTCGCCGCTA	ref_1851_upstream	23	17	26	18	24	26	17	16	28	19
CACACTATGATCCGTT	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
AATTTTGGGGGTCCAC	ref_1851_upstream	239	134	301	307	150	210	157	241	159	213
AGCCGCGCCTGGTTCA	ref_1851_upstream	24	18	36	25	24	22	14	28	17	24
TGCTTTGGTGCGTAAG	ref_1851_upstream	56	54	92	81	43	62	40	60	43	49
TCTTCTCTCAGACTCA	ref_1851_upstream	27	20	29	33	23	24	14	18	16	20
ATCTATAATAATGGTC	ref_1851_upstream	24	16	21	16	10	15	21	22	10	21
CTGCTACTAGGTGCAG	ref_1851_upstream	41	34	46	38	24	39	20	26	29	33
CGTGTGGAATTCTATA	ref_1851_upstream	225	125	296	209	143	224	147	214	153	212
CCCTACTATGTGGGTC	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGATTTACCGGAT	ref_1851_upstream	126	107	177	133	78	128	122	120	101	121
TGGTCTGGGCGACGAT	ref_1851_upstream	2	1	1	1	2	0	0	2	1	5
TTAAGGTGAATCAGTA	ref_1851_upstream	11	12	17	10	9	16	9	16	9	15
CAATTTGTTTCGTGAG	ref_1851_upstream	11	6	16	14	6	9	6	9	11	9
TTTCAACTAACTCTCT	ref_1851_upstream	26	17	31	16	13	17	12	22	10	21
TTCTCGGGGAGGCAGA	ref_1851_upstream	157	87	220	196	98	177	131	173	121	124
GACTTTCAGGCGGAGT	ref_1851_upstream	0	0	0	0	0	0	0	0	0	0
AAAGAGGTGTTGTATA	alt_1514_RC	15	24	19	25	22	10	18	16	31	10
GTTTATATTTCACACG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTACAGCCCGTT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CTGTTCTATCAGCTTA	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TACAGCACCACGTATG	alt_1514_RC	11	27	23	18	32	11	18	18	25	19
TCACCAGGTCATCAAT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GTTTTTGTATCTGTGA	alt_1514_RC	6	6	18	10	5	10	19	6	15	18
GGCTACTAAATTCAGC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CCTAGCTGTTTGACTC	alt_1514_RC	70	237	98	85	232	93	230	55	224	69
GCAGTAAGTCTGACTC	alt_1514_RC	33	55	54	39	49	37	64	39	54	38
AGACCTGGTTTCATCC	alt_1514_RC	56	46	56	80	67	43	46	43	83	42
CAAGAAGTGCGCCGCC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GGGCGATTGCTCCAAC	alt_1514_RC	13	22	15	11	24	14	27	8	30	10
CTACATTGTTGCCGTG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GAAATTCAGCTGCATG	alt_1514_RC	94	80	121	92	112	77	98	81	118	76
GCTCGAAAATTCCGGC	alt_1514_RC	87	87	83	77	69	67	78	79	80	53
CCCTTCGTGGTTCGCC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCTATCGTTTGT	alt_1514_RC	22	40	28	30	45	30	28	27	35	28
CTTAATCCTATAGAGC	alt_1514_RC	22	26	38	25	37	19	41	21	28	23
TCCCTTCTTCTGGTCA	alt_1514_RC	61	73	73	45	83	49	54	56	83	49
CAGCGCGTCACTACCG	alt_1514_RC	10	13	16	14	26	13	21	13	20	17
TGCAGCCTCGAGGTCG	alt_1514_RC	64	53	52	46	56	60	58	27	47	31
TGCAAGATGTCTTCAA	alt_1514_RC	34	20	37	28	27	19	25	28	20	15
GCGCGATGTTAGTACT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
ATGATGCCCGTTTTCT	alt_1514_RC	7	10	10	6	13	8	7	9	17	9
TTAAACGAGGTCATGG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GATTTGCCATTTGGCC	alt_1514_RC	20	12	16	21	21	9	13	11	23	9
TTTTCACGCATTGCGT	alt_1514_RC	15	19	18	11	9	20	27	6	23	8
CAAGTCATCTTGAATA	alt_1514_RC	19	27	23	17	28	18	31	17	19	7
CTTTTTGGTAGTCCAG	alt_1514_RC	2	2	4	2	3	0	3	2	3	3
AGATCATACGTGTAAG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GGATGGGGAGGCCTTA	alt_1514_RC	51	81	83	75	55	65	90	57	79	58
TGCGAATTAGTATAGG	alt_1514_RC	1	1	2	0	1	2	3	1	4	2
ATCGCGAAGTCGCAGT	alt_1514_RC	42	63	59	30	77	42	71	48	77	48
TCGGCGTCATATAGGT	alt_1514_RC	81	73	87	62	82	77	87	53	85	45
TTTATATTGCTTAGGT	alt_1514_RC	42	56	44	35	35	41	58	29	54	35
TTCATGCGGTGAAGGT	alt_1514_RC	77	74	93	82	107	61	83	58	86	57
GCACTATGTGTTTGTG	alt_1514_RC	15	19	4	10	33	14	23	10	17	5
CTTATTAGCTGTATGC	alt_1514_RC	12	21	8	10	29	14	19	9	23	20
GTATTAGTATGTTCCT	ref_1514_RC	20	34	15	28	33	16	30	9	35	13
GGCTTGTGGCTATACG	alt_1514_RC	61	60	67	46	56	47	77	39	78	38
TGGCATCACGGGTTCC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GTTCATAAGGTTCCCA	ref_1514_RC	28	45	44	35	41	38	52	29	54	24
TCGTCCAGTAGTAGTG	alt_1514_RC	58	63	73	65	63	54	92	50	86	55
ATTAACTATGTGTCTT	alt_1514_RC	4	4	15	5	4	6	6	4	11	6
CGGTCTGAATGAGGCG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TCGTCGCTAATTTCGA	alt_1514_RC	122	161	150	114	153	105	180	109	186	102
TGTAAGAAAGCCAGGG	alt_1514_RC	30	39	53	26	40	35	29	30	46	29
GGAATACTGTGATGTT	alt_1514_RC	10	16	12	12	15	17	21	11	14	11
GACTTGGCGTGAACAG	alt_1514_RC	15	21	23	10	25	13	25	17	15	13
GTCGTAATGATTCGGT	alt_1514_RC	21	27	27	26	24	13	17	24	37	31
ACCATGGCGCGGCACA	alt_1514_RC	13	17	10	10	18	16	9	16	25	17
TGTCGTTCCCATGGTC	alt_1514_RC	19	23	21	17	21	14	16	10	11	13
AATAGGTGCCGAGGCC	alt_1514_RC	7	13	12	13	18	5	9	18	18	11
TTTAAGAGACAAAGAA	alt_1514_RC	4	0	1	0	1	3	0	0	0	1
CGCGTTGTCAAGGCCA	alt_1514_RC	62	69	77	67	85	65	68	72	93	57
CGCGCCATTACTTGCT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CGGCTGCCCCATAATA	alt_1514_RC	2	3	7	0	6	4	4	1	4	2
ACCGTTCTTCAATTGC	alt_1514_RC	13	48	10	7	60	8	88	8	61	8
CGGACTTTCTCCCGTA	alt_1514_RC	91	125	98	94	139	91	166	104	133	95
TGAACTAAATTGTTCT	alt_1514_RC	44	55	45	41	63	48	50	33	47	25
TCGTAGGCTTCTGTCC	alt_1514_RC	19	57	22	22	55	24	57	27	38	19
TTTCTTCATCGCCGTA	alt_1514_RC	10	14	19	11	10	11	16	10	6	16
GATTCTCTCTTTGCGC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGGGCCGCCGAT	alt_1514_RC	114	123	157	142	150	142	152	110	153	120
AAATTTGATGTCTAGG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GTATGTGTTAATCAAT	alt_1514_RC	17	29	33	22	26	15	37	16	29	19
GTAATTTTAATTGCAC	alt_1514_RC	4	11	8	1	8	6	7	3	11	8
AAGCCTCTGTCGTTAA	alt_1514_RC	35	57	47	40	73	51	55	45	72	22
GCGGGTTTAGTTAGGA	alt_1514_RC	42	59	44	49	51	48	53	32	54	56
TAAGCATAAAGGTACC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TTATAATTTCCAGCTA	alt_1514_RC	42	51	53	52	47	36	54	40	58	31
ATCGGTAGTCGAAGTA	alt_1514_RC	44	67	63	54	75	46	60	52	82	38
TTACAAAGCACAGAAC	alt_1514_RC	338	445	426	404	506	342	523	335	521	293
AGCCCCAACGGATTCC	alt_1514_RC	24	26	17	16	20	20	17	18	17	18
GGCGGAGACTGGCTCG	alt_1514_RC	49	31	60	51	55	37	39	35	45	46
TCGTGACTGTGTTTGC	ref_1514_RC	2	15	6	2	17	2	22	4	17	3
CCAATGTATTGGGTAA	ref_1514_RC	13	17	15	14	21	14	19	9	22	10
CATTAAGTTGGGACGC	alt_1514_RC	18	28	30	19	37	20	29	22	16	17
GAGGTCATTCCGTGAT	alt_1514_RC	15	18	22	19	8	17	20	12	26	13
ACTAATCTTAGATAAG	ref_1514_RC	75	103	81	91	96	84	140	68	112	75
TAAGTACTAGCTAGAT	alt_1514_RC	34	44	46	25	48	24	48	17	66	30
TCTATCCGCCCCTCGA	alt_1514_RC	71	87	101	77	65	53	98	62	88	78
CAAAGGATGTCTGGCG	alt_1514_RC	3	3	0	3	5	1	1	5	5	0
CAAATCTACTCATATT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CACAGGTAATGTCTGG	alt_1514_RC	37	50	45	27	64	39	32	37	53	30
GAAATCCGATCATTAT	alt_1514_RC	46	56	43	34	45	24	26	32	34	23
TACGTCTATAGGATAG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GGCCCTTTTCGATTCC	alt_1514_RC	51	51	62	39	49	54	49	48	50	45
CACTCTTGCGTCGGTA	alt_1514_RC	29	47	31	29	48	22	35	28	51	24
GCATCGTAACTTCTAG	alt_1514_RC	38	44	51	31	56	40	71	44	67	43
AAGATCTTCCTATTAC	alt_1514_RC	83	116	91	76	89	74	119	74	110	66
AATGTACGTGCTTAAG	alt_1514_RC	42	49	40	28	61	42	37	27	50	43
TAGTATGCTCTTTTCT	alt_1514_RC	34	51	53	42	40	42	38	39	30	46
TTGCACCGGATAAGTC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CATATACGTATCGCAC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
AAATCTTACAGCCGGA	alt_1514_RC	2	3	0	5	3	2	0	2	3	4
GCGTTCTCGCTTTTAG	alt_1514_RC	3	1	1	6	4	7	4	2	7	8
TTAGATTACATGCCGC	alt_1514_RC	15	16	22	15	22	20	14	9	19	16
CTTAGCGAAGTAGTAC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
ATGGCCTATTGGACCT	alt_1514_RC	14	22	12	24	20	14	23	15	26	7
GTGGTTCTAGACAATT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
AGAGTCTGTCCACGGG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GTCCCTCGAGAGGTTC	alt_1514_RC	10	22	8	8	14	3	9	10	13	7
CATTTCGGCTACCATT	alt_1514_RC	75	131	112	107	92	84	116	100	101	76
GTAGAGTTATACTGAT	alt_1514_RC	21	29	23	22	28	24	38	17	36	22
TAGTACCTGGGCAGTC	alt_1514_RC	19	36	29	17	31	22	32	19	43	20
CTGCCAGGTGTGGCCG	alt_1514_RC	9	10	13	13	18	14	21	6	19	9
ATTGTTCCCGTGCTGT	alt_1514_RC	24	32	28	36	46	25	34	24	48	32
CTGTTGCCACTCCAAC	alt_1514_RC	78	83	74	58	109	63	100	56	83	60
AGATCATAATTACGTG	alt_1514_RC	187	184	201	204	193	162	191	162	226	152
GGCGCCATGAATGAGG	alt_1514_RC	31	43	35	41	28	37	24	41	32	34
CATATCGATGACTCCC	alt_1514_RC	30	42	22	32	53	16	60	20	46	14
GCGTTTCCACTCAGCT	alt_1514_RC	48	68	54	44	61	37	52	58	86	44
CGTTAGCGTCTGCGTT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GCGCTGGCCCCGCTTG	alt_1514_RC	24	29	28	27	35	25	33	26	40	14
TTAACATCATAAGCGA	alt_1514_RC	177	167	178	172	169	132	173	146	178	135
GCGCTGGCCGCGTGAG	ref_1514_RC	312	373	362	292	376	309	359	302	395	248
AGCAATCATCTGGTCA	alt_1514_RC	53	61	63	50	64	56	74	39	60	55
CCCGTAGTGTTTAATA	alt_1514_RC	5	11	1	3	5	7	12	2	6	3
GTTTCTTTGTCATAGC	alt_1514_RC	19	19	18	7	15	15	23	16	22	9
ACCACGGTGCTTACTT	alt_1514_RC	27	38	29	44	26	18	60	16	49	21
CTAGTTAGGTTGCGCC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GGCGATTCATCACATG	alt_1514_RC	195	235	200	195	214	187	236	187	221	179
ATGACATTTTATACGA	alt_1514_RC	19	36	29	24	34	35	30	36	29	23
GCGATGTTAACTATTC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CTTTGGGAGTCACAGT	alt_1514_RC	9	29	23	16	19	14	15	11	11	17
GCTCAGTATCATTGTA	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GGTGTCCGGATACATG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GTTTATTATAGGAGGC	alt_1514_RC	35	39	45	43	57	44	64	32	68	32
TTATGCGAATTCACTC	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TCGGATACGTGAGATA	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
AGGCAACGTCTACCGT	alt_1514_RC	28	67	40	27	60	35	62	30	57	20
CGCACCTGGCTTCCGC	alt_1514_RC	35	33	48	27	36	34	40	19	39	24
TTAAACTCTAAACCGC	alt_1514_RC	32	28	27	24	40	21	37	15	37	16
GGTGCTGTAGAGTATA	alt_1514_RC	21	22	30	18	30	16	25	24	30	16
GATTCGGTCGTAGCGG	alt_1514_RC	27	28	32	34	29	28	57	25	37	28
TAGCTTGAGCTCTCGG	alt_1514_RC	14	25	14	20	38	17	18	10	29	16
CCATAGGGACCTTCCT	alt_1514_RC	30	47	23	39	28	19	43	29	31	15
CCAGGGCAAGGGGCAA	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CAGTCCCTGTACTTAT	alt_1514_RC	11	19	16	19	21	14	12	7	20	9
TCCGTCTGGTTGGTGT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GTGTTACACATAAGGT	alt_1514_RC	18	20	30	14	38	18	27	15	42	25
TCAGTTTTTTCTACGT	alt_1514_RC	33	50	34	32	58	30	56	30	45	31
TCCTATTCGCATAATT	alt_1514_RC	175	232	220	184	247	175	237	170	227	163
CCATCTGGTTCGCCAA	alt_1514_RC	1	2	3	0	3	0	3	1	3	3
TTGTTTCGAGTCTTAG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GCGCGAATGGGAGTGA	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TGTGCCCGAGTTGGAG	ref_1514_RC	17	22	29	25	23	19	27	13	24	11
TGAGGCACCTGGTTAA	alt_1514_RC	50	50	59	53	51	43	81	42	70	44
TATACATTTAGCTGCG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TAGTTGGGTTATTGTT	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
CGAGCCCTGCGTAACG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TCTATGCGAATGTGAG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
TCAAGAGCTAGAAAGT	alt_1514_RC	23	41	25	40	32	21	36	34	25	31
GGCTGCTATCCCAAAG	alt_1514_RC	0	0	0	0	0	0	0	0	0	0
GTACACCATTGCACTA	alt_1514_RC	10	22	19	8	26	18	15	11	21	12
GCGCCTTGTCTGGTTG	alt_1514_RC	93	135	118	94	139	108	113	93	119	85
CTCTCTTTTTGTCGAT	alt_1514_RC	26	38	42	28	24	35	32	23	36	18
CGTTTCTAAAACAGGG	alt_1514_RC	27	29	33	39	37	27	30	21	35	31
GTGGTTCCATGCGTGT	alt_1514_RC	16	20	37	25	14	22	25	17	15	18
TAGGCAGCTAGTTTCC	alt_1514_RC	178	195	205	219	264	161	220	168	250	142
TCGCTGGATACGGGGA	alt_1514_RC	9	11	9	18	14	8	21	13	9	12
GTCTTAAATTGTTTCC	ref_2047_upstream	55	40	50	38	38	43	59	42	45	50
ACCCTTCGTCCGCATC	ref_2047_upstream	9	1	5	1	5	8	6	2	3	8
CCAAATGATTAGATTT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTGTTCAGGCATA	ref_2047_upstream	13	9	21	15	15	11	10	11	14	17
CTCGTATAAAACGCTT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCCATCCTTTTAT	ref_2047_upstream	42	53	47	47	66	34	57	42	55	40
AAATTTTTCATTTGAA	ref_2047_upstream	85	66	101	74	58	68	66	93	74	60
ACGTCCTTGTAGATTG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAGTACTTTGTAC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCGCAATGCTGAA	ref_2047_upstream	181	132	205	166	117	155	177	128	140	142
GGAGGTTAAATGTCTT	ref_2047_upstream	21	20	29	32	19	26	19	14	23	15
AATTTCCACAACCAAC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATATCTACACAGAGGG	ref_2047_upstream	31	29	32	29	31	28	37	30	29	22
AACGACCGAACATGCG	ref_2047_upstream	42	25	55	35	27	42	52	29	53	30
ATATCAACGAGCTTGG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGCGAGTAATTGA	ref_2047_upstream	15	8	9	7	11	9	12	15	10	17
AGCCTGTGGGTCAGCC	ref_2047_upstream	35	47	49	33	55	36	53	30	63	42
AATTATGGCTGGGTTG	ref_2047_upstream	51	40	67	52	39	65	34	45	35	54
TCCGACGTTAGTCCTA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCGAAAACAAGTTGTC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GAAACGTTTTTTGTCG	ref_2047_upstream	11	18	35	27	23	22	20	24	29	20
CGCGCATGCACATAAT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCATAAGTACCCCTCG	ref_2047_upstream	5	4	18	9	9	8	5	8	14	13
AAACTTATGTGTGATG	ref_2047_upstream	27	31	27	38	44	30	56	34	40	47
TTTCCCGATTTTTCGT	ref_2047_upstream	12	12	10	4	15	9	4	18	9	6
ACTAACTCGCGTTTAT	ref_2047_upstream	186	142	226	168	186	181	158	173	206	150
AGGTTACTATAATCGG	ref_2047_upstream	6	8	4	4	5	5	1	5	4	7
TTCGTATGCCTATCGG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCCACACATAACCTTC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCGTTTGGTCCCT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TAAACAACCTCGTAGG	ref_2047_upstream	0	0	3	3	1	2	2	1	0	1
CTTTCTTGGTCCGCCT	ref_2047_upstream	36	32	40	38	40	36	35	25	30	28
ACCAACTCCAATGTTG	ref_2047_upstream	36	41	53	41	52	30	40	31	31	29
ATGTCGTTACGTTTGA	ref_2047_upstream	19	16	17	18	11	17	17	16	13	19
TTCTACTGTTGTAGCA	ref_2047_upstream	25	24	31	37	13	21	29	20	24	27
GGGAACTCTTTTTTGT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGGTACTTACAAAGTT	ref_2047_upstream	4	5	19	5	10	6	8	3	2	0
GATGAGATGACCGGTT	ref_2047_upstream	2	2	1	3	2	1	5	5	1	4
GACCACCTCGTGGTGT	ref_2047_upstream	17	19	12	10	13	21	13	15	10	13
TGTGTTTACGCCACCC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAGCCTTCTTGGG	ref_2047_upstream	4	7	5	4	4	4	4	6	5	6
TAAGTTCCCCTGGGCC	ref_2047_upstream	5	9	4	6	6	4	11	16	15	6
ACTATGGTCTTTTAGC	ref_2047_upstream	41	34	25	32	26	18	45	31	22	32
TAACGAACATCGCATA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCATTCACCAGCCAGA	ref_2047_upstream	36	55	69	59	44	57	54	45	57	38
AGTCGATTGTAAGTAG	ref_2047_upstream	30	21	24	21	36	20	28	36	20	11
ATTTGTCCCACGTGAT	ref_2047_upstream	97	53	124	89	52	92	67	86	64	93
ATAACTGCCATGCACG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTTCATGCTTCGC	ref_2047_upstream	11	9	12	12	10	8	10	13	9	8
TATGCCGTCCAGTTCC	ref_2047_upstream	9	4	4	7	11	5	4	11	3	3
GCTATAGGGTCTGGAT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CCAGAGGTCCGTAGAC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TAACTCTAGATTACAT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CATTTACCAGGCCGGA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
AGTTATTCATCTTTTG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAAATATACCGTA	ref_2047_upstream	29	23	35	39	25	19	34	28	26	27
ACTGGATTGGTTTCTC	ref_2047_upstream	42	30	72	42	40	38	48	53	36	31
GAACCCATTCAGCCGC	ref_2047_upstream	4	6	7	9	5	4	9	4	10	7
CCTTGATTGAAATCTG	ref_2047_upstream	57	49	72	56	59	46	58	48	57	32
AAGAGCCTGCTGTATG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
AACGATACTAAATTAC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
AGTTATATCATATTAA	ref_2047_upstream	9	7	10	7	7	8	1	10	10	11
TCCAGTATGTATATCT	ref_2047_upstream	23	30	34	34	35	34	42	24	32	25
AGATTTTCTATACTCT	ref_2047_upstream	190	149	213	174	174	169	169	178	202	167
ATTTTCAACGCCGGCT	ref_2047_upstream	20	17	17	14	17	19	7	10	7	19
ATCGGGCTGGTGATTT	ref_2047_upstream	25	22	54	35	36	37	28	36	16	27
ATTAGTACTATAGCGG	ref_2047_upstream	13	11	18	18	21	12	17	13	9	13
AAGTTCACATATGCGG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCTGTAATACTAG	ref_2047_upstream	16	21	32	23	23	25	22	20	27	22
CATAGAATAACTTGAG	ref_2047_upstream	76	42	80	85	56	77	61	57	50	43
TAAATTCTAAATCATG	ref_2047_upstream	44	33	41	32	11	34	19	43	23	36
GAATTATTTGAATCCT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTGAGAAGACTGG	ref_2047_upstream	13	8	7	10	9	18	10	16	9	9
GGTTTCTCCGTACCTT	ref_2047_upstream	40	48	56	51	43	52	51	43	56	40
GAACTACAAGTTATTA	ref_2047_upstream	68	38	81	58	56	45	52	55	63	60
CTGCAGACTCAACATT	ref_2047_upstream	24	22	29	21	26	20	17	26	16	28
TGTGGAGGTTACCGGT	ref_2047_upstream	2	2	4	2	4	2	1	1	3	0
TTAATGTTAAAAGCGA	ref_2047_upstream	23	40	30	30	31	32	28	32	37	22
CTCTTCTCATGTCAGT	ref_2047_upstream	4	8	7	2	12	5	6	6	7	6
AGTGCTCGGATCCGTT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGCCATGTTATTTTCT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTGGCATTGCAT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCTGCGCGCCAAA	ref_2047_upstream	31	40	42	32	37	40	30	27	51	34
ATCTTGTTAGTATGTC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CACTATACCTTGGTGA	ref_2047_upstream	23	19	23	24	17	7	23	13	19	12
TGCTTTTAATCAACGT	ref_2047_upstream	6	3	15	5	10	3	2	3	11	5
TGGAGGGCTATTTTTT	ref_2047_upstream	17	9	12	22	13	15	17	11	13	9
GCAACACGCTCTGGTG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAATCGGCTCGCT	ref_2047_upstream	8	2	6	4	10	5	4	2	0	5
TTTTCGATAGTTTCCG	ref_2047_upstream	8	11	8	10	11	10	9	5	14	6
TGGATAGCCCGCATTC	ref_2047_upstream	19	17	32	34	12	26	23	18	22	22
AAATACCTATAAGGTA	ref_2047_upstream	20	12	18	23	17	15	25	12	17	6
TGGGGGGTCCTTGATG	ref_2047_upstream	10	13	8	13	9	13	10	11	6	3
TGGGGGGGTCATGTTC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCGTATGATACGC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGGTACAGGTTTG	ref_2047_upstream	17	13	22	17	19	26	16	21	18	25
CGACCTTGCGCTGGAG	ref_2047_upstream	4	4	14	7	10	4	6	7	4	4
GCGCAGAGATAGTCGG	ref_2047_upstream	55	40	44	49	34	35	32	34	41	30
TCGTTCTAGGTTCCTG	ref_2047_upstream	95	97	109	88	78	87	95	74	96	78
TGTGCTTAGATAGTTC	ref_2047_upstream	12	9	12	21	16	20	17	12	10	16
ATCATTCGTGGCGTGC	ref_2047_upstream	149	148	176	147	110	130	142	126	171	128
CGTTGATCGCCACATC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CCACTAGCACTTTATG	ref_2047_upstream	0	1	1	0	1	0	0	1	2	0
CGTTATGGCCTTTGTC	ref_2047_upstream	5	7	7	5	10	4	5	1	7	10
TACCTAATCTGTTGCG	ref_2047_upstream	10	13	25	11	12	10	16	14	11	13
CGTGTAGAACGCGGGC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TAGCACTCAGGTTTCG	ref_2047_upstream	85	63	87	96	70	71	78	83	82	70
TCCACAAATGCGTCCT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATGTACTAGGTCATGA	ref_2047_upstream	15	15	24	18	11	16	10	22	16	12
TCATAGTCGGCTTTAT	ref_2047_upstream	19	18	27	12	27	24	18	11	18	24
TTTGGGGACGCATTCG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CTCATTGGTTCTTTCT	ref_2047_upstream	6	4	16	10	5	7	11	11	5	8
GTACTCCGGGACCGCT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCGCAGTATGCGT	ref_2047_upstream	41	48	57	37	47	39	43	33	56	38
GTCTAATTGCGTCTCG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CAACGCTAGCATTGTA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAATTTATCGTGA	ref_2047_upstream	172	130	200	187	110	147	146	162	125	131
CACATTACCAACTTCT	ref_2047_upstream	6	2	0	3	4	5	2	6	3	2
CCGTATTCGACATCAA	ref_2047_upstream	9	6	6	6	2	1	10	5	4	3
CTACACTCTTCAATCG	ref_2047_upstream	11	19	13	12	16	10	27	14	15	14
AGAACGGTACTCTTTC	ref_2047_upstream	13	16	15	20	14	18	21	23	11	18
CATACTAAGATTCTCG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCACCTGGGTTATGAC	ref_2047_upstream	23	19	31	25	29	16	19	16	30	17
TAACAACGCACCCCGG	ref_2047_upstream	32	32	37	28	39	23	42	19	40	17
GCCCGTTGGAACCTGT	ref_2047_upstream	20	16	23	16	11	11	24	14	13	15
TTAACGAACGTTCGAC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTTTAAAACCGCC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGGGTGATTGGGT	ref_2047_upstream	12	19	20	15	4	18	19	20	17	16
CATCTCGCTTTGGTTC	ref_2047_upstream	86	94	97	107	81	76	91	81	75	85
TTCCTTGAATGCATTG	ref_2047_upstream	34	45	57	50	47	37	46	38	53	30
CACCTCGGCATGTTGC	ref_2047_upstream	0	2	0	0	1	1	3	1	2	2
CTCGAAGATTGACCGA	ref_2047_upstream	5	39	10	13	23	8	24	17	17	9
CTTCGCAGGTGCCTCA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGTTAGCACGTGC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCCAGTCATCTAT	ref_2047_upstream	25	22	23	20	18	18	12	23	15	25
TCTTTTACTTTTTGTC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGGTATGGTTTGCGCT	ref_2047_upstream	4	10	5	3	4	3	8	10	14	4
CGGTAACTCACCTGCT	ref_2047_upstream	2	16	7	1	8	3	8	5	19	0
CAGTCTGCATTGTGGT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGTTATGCTCCCCTGG	ref_2047_upstream	2	4	0	4	4	0	7	0	2	2
GTCTGTTCCATAAGAT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGGGATGCCGGAGCCA	ref_2047_upstream	12	11	16	4	10	13	9	11	14	6
CCATTTAATATGGACT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
AAAACTTGCGAGTTAA	ref_2047_upstream	6	8	9	7	4	6	8	9	5	7
AATTTCTTCTATTTGT	ref_2047_upstream	38	12	51	33	14	48	12	43	19	30
TATACGCCGTACGCGC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCGCTTAGACGGG	ref_2047_upstream	42	37	39	43	37	34	43	31	40	40
GGCCTTGTGACTGCCG	ref_2047_upstream	19	9	13	7	4	8	3	16	14	23
TCTTGTTGAAGGTTAT	ref_2047_upstream	39	33	38	51	48	29	39	36	28	33
GGCTTCTGTACTGTAC	ref_2047_upstream	6	6	5	2	1	3	3	2	5	1
AGTGCTCGGATTCTGA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTAGAGCTTAGTG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TCTGACCATGTCTAGA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGATGCTGGACA	ref_2047_upstream	4	10	9	9	7	5	3	14	1	4
GTATACTTACCCTTAA	ref_2047_upstream	0	5	0	0	4	1	3	1	0	3
ATTCCCCTTTGTAGAT	ref_2047_upstream	27	17	29	24	26	28	15	23	34	16
TAAGGATTGCAATTAT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCATCGTATCCATAGA	ref_2047_upstream	92	80	115	91	67	87	82	90	85	87
GCCGCCCTCGTATCCG	ref_2047_upstream	48	39	56	41	42	42	46	32	57	44
GCTGTCTAGTTGACGT	ref_2047_upstream	5	6	8	8	6	6	5	5	1	3
TCAAGCGCGTTTTGAT	ref_2047_upstream	19	10	19	24	11	18	16	21	19	20
AGGCACGTCTACGTTC	ref_2047_upstream	27	28	34	33	22	31	25	27	20	34
TCCACGGGATGCTTAG	ref_2047_upstream	43	37	41	41	48	53	35	32	41	41
AGACGTTTGTGGCATT	ref_2047_upstream	6	6	7	9	4	2	2	6	4	3
GATTATACATTAGTAA	ref_2047_upstream	122	133	139	123	120	90	122	117	108	107
AGTTCTTTCCAATCGG	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
ACGAAGTATTGAACGA	ref_2047_upstream	69	48	76	81	47	46	48	66	56	54
CACGACGGTCAGTTGC	ref_2047_upstream	33	19	43	29	25	22	27	29	38	29
TAATAAGTTAAGGCAT	ref_2047_upstream	11	12	19	14	10	17	12	19	13	10
AGGAAAAATGTATCTT	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTTACCTGCCTAT	ref_2047_upstream	56	55	54	49	60	55	59	51	47	42
CCTATATAGAACAATC	ref_2047_upstream	4	5	3	4	5	3	2	7	3	1
TTAGTATCGACAACGG	ref_2047_upstream	27	16	45	25	18	18	20	24	18	19
GTATTTATAGCGACGG	ref_2047_upstream	21	16	21	22	19	15	20	24	19	16
CGCATCAGGCACATGC	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCTGTCGCTGCAA	ref_2047_upstream	0	0	0	0	0	0	0	0	0	0
GGATGCGTAAATTAGG	ref_2047_upstream	4	3	5	10	5	8	4	3	7	3
GAGCTCTTGGCCATCG	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCGCTCTGGTCTA	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CCACTCAGAGATTGAG	ref_2011_fdr	25	73	48	47	68	43	112	54	83	35
TTGTGCTTCTATCTGA	ref_2011_fdr	27	27	31	16	40	14	33	19	26	20
TCAATGGTAGGGTACA	ref_2011_fdr	14	13	16	9	18	12	11	12	29	7
AGATAGAGGTAGATCT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CCTGAAAGCTCTCCCA	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGCGCCGGCTTCA	ref_2011_fdr	21	44	36	26	35	21	40	29	27	23
ATATCTATGGCCGTAG	ref_2011_fdr	43	41	38	55	43	36	36	40	39	32
ATGTGCTCTTCGCAAC	ref_2011_fdr	23	32	35	16	28	14	21	22	20	21
TTTGCCGTCTGGGTCC	ref_2011_fdr	1	10	4	2	10	3	3	4	7	2
TGAATTGCTCTTGGGA	ref_2011_fdr	46	50	58	58	94	50	79	37	70	49
AGCGCTCCGGTGGCAC	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCGGCTTGATTTA	ref_2011_fdr	15	8	17	8	14	10	14	16	14	6
AAGCCTTCCTCACAAT	ref_2011_fdr	62	53	64	52	78	42	53	43	56	44
ATGTCAGGGAGTCGCT	ref_2011_fdr	48	74	81	52	83	54	52	52	55	48
CCAGTTTGTTAGCCGG	ref_2011_fdr	6	34	4	2	32	3	22	8	22	9
TGACGCATTGCGCCCT	ref_2011_fdr	95	124	117	91	134	86	161	69	131	73
AACAATGTTATATTAT	ref_2011_fdr	41	47	30	27	33	48	33	22	34	31
ATTAACGGGATCCTGA	ref_2011_fdr	47	54	75	53	60	52	61	46	52	54
ATACGTGTACATTTTT	ref_2011_fdr	3	4	1	1	4	1	2	1	2	3
ATCGGCGGGCTTTGAT	ref_2011_fdr	33	39	39	40	45	26	51	42	44	25
ATTCGTTGTTATGGAG	ref_2011_fdr	34	39	51	32	51	32	42	23	38	24
ACCTGAGACCTCCTTC	ref_2011_fdr	26	23	30	29	29	23	23	18	43	30
GGTCGCTGCGATTACC	ref_2011_fdr	15	62	14	18	56	14	83	11	73	18
TACCCCATGTCCTACC	ref_2011_fdr	29	53	61	42	43	48	61	43	54	29
TGTATCAGCTGTAGTA	ref_2011_fdr	50	64	60	61	53	41	81	33	80	46
GAGATTTTGATTCTAA	ref_2011_fdr	32	32	37	29	46	27	38	34	48	22
TGATCTCAACATTGCT	ref_2011_fdr	17	20	9	17	16	9	18	17	13	16
ACTCTGCAATCCCACT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
TAAATGGCACTTCGGT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCAATCATTATAC	ref_2011_fdr	21	20	24	16	35	14	25	14	22	12
GGCTACACCTTAGTCG	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CGATCTGGATAACTCC	ref_2011_fdr	13	18	20	17	18	11	16	10	18	10
TGGATTTATTATAGTT	ref_2011_fdr	18	16	13	15	18	18	22	13	10	8
CAGAACACACTCACAG	ref_2011_fdr	39	49	43	48	59	33	61	44	53	30
GTCGATGTTTGGGGTA	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
ACGAGCTGCGAGCGGG	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CGAATTCCATTTAGAG	ref_2011_fdr	12	21	35	22	24	21	24	16	19	14
GCTAGTAATCTAGATA	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTAACCATATACC	ref_2011_fdr	9	20	21	11	27	19	26	11	23	21
ACTACCTCAGACACAT	ref_2011_fdr	0	1	1	0	4	1	2	4	3	1
ACCATGCGTGAATCTT	ref_2011_fdr	14	23	16	17	25	16	21	21	28	21
TATGGACCTCGCGTTG	ref_2011_fdr	20	33	35	23	40	27	39	22	56	27
TATTAAGGCCTAGGTG	ref_2011_fdr	15	7	15	8	22	17	29	17	24	13
ATGTTTCGTGACTGAA	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CAGGCCAACCGAAATT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
TCCGAATTCCGTTGGT	ref_2011_fdr	30	48	41	41	52	31	37	36	40	29
ATCTAAGAAAAGGTCT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
GGCACTTCGTCTAGGG	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CAGGGCTATTGCAACG	ref_2011_fdr	8	13	18	4	10	3	14	6	13	5
TCGTTTTGCTTGCGTA	alt_2011_fdr	101	107	126	103	132	78	97	67	117	73
TACACATCCGCTTGCG	ref_2011_fdr	42	60	48	50	78	37	66	40	76	52
TGGATAATTCACGCCC	ref_2011_fdr	76	88	125	96	125	102	138	81	157	85
ATGTCAGTAGCGATTA	ref_2011_fdr	16	31	32	33	44	21	27	25	24	23
GCCGTATAATAATGAT	ref_2011_fdr	69	91	76	63	108	63	91	50	84	43
GCGTTTCTGTCTAAAT	ref_2011_fdr	55	53	53	40	53	33	65	52	54	36
GAATCATTCACATGGT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTTTTTGAGCTA	ref_2011_fdr	28	43	32	26	27	25	43	22	42	19
GCCCGCTGCATGTGAT	ref_2011_fdr	16	22	27	22	28	18	26	22	21	27
CTAGTTTGAGCACGCA	ref_2011_fdr	21	35	29	24	40	25	45	23	25	12
CCTATTGAGGTTATGT	ref_2011_fdr	0	6	10	7	15	5	6	6	16	3
CGCAACGGGAGATCCT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
AGGAGTGGTTTTCTTA	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
TCATTAGTGGTATACA	ref_2011_fdr	16	18	10	7	11	15	16	9	18	6
TTGTCTGTCTCCGTGC	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTCTCTTATGATA	ref_2011_fdr	88	94	90	81	116	75	104	90	116	82
CCTGATGTTGTAATCT	ref_2011_fdr	31	41	31	40	34	46	31	16	38	38
ACTTGGCTCCGGAAGT	ref_2011_fdr	0	0	0	0	0	0	0	0	0	0
CGTAGATCCCCCTGCT	ref_2011_fdr	47	51	64	66	53	57	60	42	54	41
TGCATATCCGGATGGG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TACTCATCTCGACGTG	alt_5880_new	62	44	96	77	30	66	29	57	43	48
CTGGCACAAATCGCCC	alt_5880_new	261	131	358	301	155	293	155	262	171	257
CCTCGGCACTGGTTTT	alt_5880_new	3	2	5	1	1	0	1	0	1	1
GAAGTGTCATATGATA	alt_5880_new	67	23	70	62	40	62	35	58	31	46
AGATAGTTGTGACGTC	alt_5880_new	9	8	2	8	3	8	5	13	10	8
ACAGAGTTTATCCTTT	alt_5880_new	15	5	10	11	2	4	4	8	6	5
TTACCATTGCTACTGA	alt_5880_new	84	55	100	85	67	70	66	101	65	74
GTAGTCTATTGCGGTG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CCGATATCTCAACAGA	alt_5880_new	73	63	85	47	47	68	32	62	53	47
GTCTTCCGTCGAAGTT	alt_5880_new	65	47	77	84	37	61	46	77	55	68
CATGTTTACGTGGAGC	alt_5880_new	140	67	184	137	85	111	82	119	79	117
TGATTTTTCTGTGGGT	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TTATCTAGCAGCATTA	alt_5880_new	0	0	0	0	0	1	0	0	0	0
TGCCGGTTGTTTCAAG	alt_5880_new	97	71	120	101	53	96	63	80	60	70
TGGGTCCAAATTTTAT	alt_5880_new	84	43	127	105	60	92	48	95	56	67
CCTCTCCATTAGATTT	alt_5880_new	201	116	222	191	120	187	116	169	109	176
CGATTTAGCACTTTAC	alt_5880_new	2	2	3	4	0	0	1	2	3	4
TGAGGTCGCATCAGGC	alt_5880_new	34	22	45	51	30	46	31	39	18	35
TCACTACTTAGGGGAG	alt_5880_new	113	51	122	85	64	108	74	104	56	83
GATGACGTCGTGATTG	alt_5880_new	13	7	7	10	7	10	5	6	7	3
CACACCGTTACCTTTA	alt_5880_new	18	23	41	29	20	26	18	33	25	24
ATCATTTGTTTATGCG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TACACTGTATTAAACT	alt_5880_new	41	19	39	38	21	45	16	23	28	23
GACGGATAGCAAAGGT	alt_5880_new	71	48	103	105	40	95	44	87	47	90
CATTACAGTTAACGGG	alt_5880_new	175	86	215	193	105	161	98	148	98	160
AAGGGCATGAGATGTC	alt_5880_new	8	2	8	6	3	8	4	6	3	2
GATTAGTTCGTTACCT	alt_5880_new	129	85	160	148	89	119	88	130	80	109
GCTCCTATGAAGATCT	alt_5880_new	122	66	131	123	63	83	64	92	68	110
GTGGATCGTCTTTGAT	alt_5880_new	71	19	61	81	32	59	36	63	39	43
GGACCGTTCGTTCTCT	alt_5880_new	8	7	7	6	12	8	5	12	5	8
ACTGTTGGTTCAACTC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
AAGAACCTCTTTGGGG	alt_5880_new	2	0	8	7	1	5	2	6	1	1
ATTGTCGTTTGTGTTC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
GGGTTGTAGTTTTTGC	alt_5880_new	60	23	67	61	34	62	37	60	31	38
TTCCGGGCGACCGAAC	alt_5880_new	25	28	43	29	11	27	19	19	22	23
GGAGAGAATCGTGGGT	alt_5880_new	75	37	76	72	40	69	34	70	48	52
TCTGCCTTACGTAAGA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
ATGGGGACGTCCCGTA	alt_5880_new	84	55	118	101	36	86	49	81	65	88
ACACTTCGATACAGTT	alt_5880_new	20	14	19	10	9	12	8	29	6	21
TTGTAGGGGCTGGCTT	alt_5880_new	0	0	0	0	0	0	0	0	0	0
GCGCGTCCACAGGCTG	alt_5880_new	1	1	2	0	0	0	1	2	2	1
TTGGTGGGGGGTTTGG	alt_5880_new	3	4	9	1	0	4	3	5	6	5
CATCATGTAGAACCTT	alt_5880_new	167	99	225	174	105	162	103	155	111	164
ACCATATGGTTCACCC	alt_5880_new	176	96	181	163	95	137	111	132	109	142
AGGTAGATGCAGCCAC	alt_5880_new	184	95	264	204	92	157	87	181	98	151
ATGGTACCAATAGGGT	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CGTTAGCATAGCAGTA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CAGCAACGATCTTTCA	alt_5880_new	124	57	144	124	73	108	64	114	61	94
AATGGCCATACCGGTG	alt_5880_new	304	129	330	317	147	258	173	287	133	256
GTCGAACCAACTTCTG	alt_5880_new	33	21	22	48	22	25	17	30	20	24
GGTTGCGCGGACCCGG	alt_5880_new	48	23	39	49	29	46	31	45	30	40
AAAAGTCGTATGTACA	alt_5880_new	65	26	82	86	35	87	62	67	32	78
GACCCGACTCCGCGAG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
GGACGGCGGACGGTCT	alt_5880_new	17	8	21	14	9	18	11	18	10	12
TCTGCGTTTCCTAGTG	alt_5880_new	341	181	403	331	159	301	177	274	178	277
GTAGACGAATGCTTTG	alt_5880_new	5	3	4	3	0	0	3	1	0	2
TACAATCTCTAGAACA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CTAGAGGGCAGTTATA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
GACACTTCACAGATTT	alt_5880_new	6	8	19	9	6	17	4	7	3	13
CACTGAGGTATTCGTG	alt_5880_new	37	39	77	79	35	51	29	59	30	52
ATCCGCTCTTCGAACA	alt_5880_new	78	31	108	63	35	59	41	63	29	65
TCTTCAATGATCCGGT	alt_5880_new	23	7	18	15	9	10	11	10	11	9
TAGGATCTAGCTCGCG	alt_5880_new	259	177	311	303	175	245	170	228	187	247
TACGACTTGATTATAA	alt_5880_new	3	5	16	7	2	11	7	12	8	7
ATGTAATATTGTACCG	alt_5880_new	57	20	60	48	41	59	27	48	43	53
TATATTCGGCTAGTAA	alt_5880_new	290	195	375	349	156	291	181	221	191	232
TTTTTGCCGCGAGTTA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TGAGCAAAACGGTGTA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CATTAATCTATTAACT	alt_5880_new	0	0	0	0	0	0	0	0	0	0
GGCTCGTCAGCTTAGG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CTCTTGGACTTTGTGT	alt_5880_new	30	18	24	36	17	21	14	27	18	34
TTTGCGTGTTAGGGTC	alt_5880_new	19	16	26	20	19	9	14	19	7	20
CCGCTTTGGATTATTG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CTCGTTGGGGGAGCTT	alt_5880_new	18	23	26	20	21	21	16	27	27	11
CCTACATTGTGTTTGG	alt_5880_new	84	68	110	109	63	91	75	90	99	78
TTCATCCACGCTTCGT	alt_5880_new	17	13	31	28	20	22	14	33	13	29
CGCAGAATCTAGGCCG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TCACACAGCCGTTGGA	alt_5880_new	268	160	352	288	162	232	145	258	171	254
ATGAACCTTCGGCCAG	alt_5880_new	101	45	96	99	59	101	52	115	53	106
ATCGAATATAGATCAG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
ATCCAATTATCACAGA	alt_5880_new	22	6	37	27	20	17	20	30	17	26
TCACACTATAGAGTAG	alt_5880_new	654	403	813	698	397	615	414	635	400	559
AAAGCCATACCATCAG	alt_5880_new	101	51	136	122	59	103	62	110	58	83
GGTCAACGTGTCGGTG	alt_5880_new	8	6	5	1	2	4	1	8	1	5
ATTACGGTGCTCTGTT	alt_5880_new	27	12	33	33	11	28	20	35	18	48
GAAAGATTTTCATTAC	alt_5880_new	43	11	36	38	18	29	19	28	18	20
TGAAACTTCTCTCAGT	alt_5880_new	38	12	48	29	14	22	24	26	20	24
TTTCCTCGGATGCCCT	alt_5880_new	29	4	46	41	23	35	33	31	16	30
GCTGGCTGCTACACTT	alt_5880_new	40	19	39	37	8	35	24	42	25	27
CGTCTGTGTCCTGGAA	alt_5880_new	103	63	129	93	49	68	56	82	55	87
ATACCGCCTCTGATGA	alt_5880_new	52	33	59	52	27	64	25	41	30	45
TACCTATGATATTGTC	alt_5880_new	38	13	35	24	20	30	25	38	20	27
TGGCATACTTTTTCCG	alt_5880_new	53	18	74	63	18	42	24	52	24	32
TGGTACCATTACGCCG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TGGTGTACTAGGGTTT	alt_5880_new	979	511	1221	1116	606	981	638	1028	603	900
ATGACGTATACTTGGG	alt_5880_new	344	198	408	349	191	328	205	307	188	295
CTTAACGGACCATTTG	alt_5880_new	3	3	3	4	4	1	4	5	7	2
AATCATCTATCATCTA	alt_5880_new	3	3	11	4	5	7	3	7	7	5
TGAAGAACATAAGACT	alt_5880_new	15	4	11	12	8	6	11	8	4	13
TCTTTGTTTCTCGCTG	alt_5880_new	68	14	54	53	22	57	32	44	24	57
GAATCACGCTGCCACT	alt_5880_new	14	3	19	5	7	15	8	13	7	12
TTCTCCTGGGTGCAGT	alt_5880_new	29	21	35	47	43	41	45	35	37	33
GTAACATGTTCGTGTG	alt_5880_new	285	173	360	328	180	351	218	301	210	255
ACCGCATACGCCTCCA	alt_5880_new	21	14	41	23	16	31	19	16	23	21
GGGATCGTTGGTAAAG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CACGGTCGATCTCGCC	alt_5880_new	5	17	22	25	19	23	27	23	32	31
CACTCCATGTGCTAGT	alt_5880_new	8	17	9	5	20	3	30	5	23	5
TGAACAATACAGCCAC	alt_5880_new	196	112	226	204	143	170	129	180	154	189
AAATTGATAGCCGACC	alt_5880_new	11	9	13	12	7	16	8	13	8	11
CCATAACAATTCATCG	alt_5880_new	28	9	32	23	14	20	16	14	18	23
CCGGTTCTTGTTATGA	alt_5880_new	56	177	65	62	166	52	192	56	196	59
TCTTTGGACTGACTTG	alt_5880_new	124	73	198	145	87	125	82	156	82	135
AGGCTCCGATTCAAAG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
ATCTTCTCGTTTCTGG	alt_5880_new	77	54	111	119	62	89	56	95	60	120
GCCTGTCCTCGAAACT	alt_5880_new	45	22	59	57	31	35	37	46	27	51
CCTTATTAATTATAGG	alt_5880_new	191	88	205	154	87	162	96	168	89	147
TATCTTCCGAAACGGG	alt_5880_new	114	52	180	129	52	127	66	95	65	113
CTTTCTCACCAAATGT	alt_5880_new	234	214	315	300	180	251	200	262	192	197
TGTCCCACGGTAATTA	alt_5880_new	75	28	76	88	41	79	38	69	30	77
CGGATTCTCTATTATC	alt_5880_new	63	20	117	79	28	76	33	88	35	67
TCGCCATCTCTTCCAC	alt_5880_new	16	30	20	18	43	13	32	14	41	9
TCTGTCCGGGCATCGT	alt_5880_new	179	98	188	195	106	138	114	168	101	158
TTCAACCCTTCCTTGA	alt_5880_new	49	27	46	41	33	33	25	37	35	40
TTTTGGGGCTGGGGGC	alt_5880_new	39	15	45	42	17	39	27	29	14	29
CTAGCTGTAAAGTTGA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
ATCTATATTGTATTCG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TGGGGCTCCGAAATAA	alt_5880_new	315	155	399	309	146	295	155	229	158	257
TACCCTTGGTCGATCA	alt_5880_new	14	11	17	18	12	7	15	12	14	6
CTTCGCGGGATTACTA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
CGGAGCTATTAAAGGA	alt_5880_new	82	29	79	50	18	47	27	46	30	62
CGCACTGTTTGAATGA	alt_5880_new	86	36	74	67	37	61	40	66	37	56
GGTCTCCGGCAGGCGT	alt_5880_new	174	83	199	156	90	139	84	136	80	136
TCGGGTAGCAGCCGTT	alt_5880_new	43	24	70	56	39	51	20	46	36	43
GGTCCTGCGGGCAAGT	alt_5880_new	85	38	109	91	55	75	40	77	48	73
CAAACCGGTAGATTCC	alt_5880_new	140	72	150	122	62	117	63	124	88	95
TCTTCAACGATTCCCT	alt_5880_new	36	14	42	35	8	41	19	36	12	37
TTGTTCGTCAAGATTG	alt_5880_new	197	111	242	229	117	204	118	202	101	189
TTGTCGACTCGGCTTC	alt_5880_new	86	67	88	65	45	70	74	39	60	54
AGCAGATTGAGTAACG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TCTCAGCCAGACGCAA	alt_5880_new	15	9	21	15	16	9	13	16	13	10
TGGCTCATACATCAGA	alt_5880_new	13	6	23	17	10	17	19	9	6	16
ATCCCGCCTAGTTGTG	alt_5880_new	165	86	123	115	82	139	85	93	85	123
TGACCTTTCCAGTGTG	alt_5880_new	9	14	23	20	4	13	10	10	9	10
TCGCGTCGGTAGGGCT	alt_5880_new	17	11	30	21	10	21	17	30	14	19
TGGGGTCTGTCTACTT	alt_5880_new	34	20	51	35	21	45	25	55	25	35
CATTTTGCCTATTGTC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
AGAGTCTACCCCAATT	alt_5880_new	11	11	15	14	15	15	9	12	17	12
GCTAGTCGGAAGTTTG	alt_5880_new	159	78	192	149	66	176	77	164	99	135
GGGTCGGGTTGTCACC	alt_5880_new	31	26	48	38	28	32	24	31	27	29
CTCGTGTTTGCAACTT	alt_5880_new	127	81	155	127	67	121	89	118	94	115
CGCCCTGCGCCTTTGG	alt_5880_new	58	38	73	62	40	73	26	56	32	56
GCTCAGTCTAATGTGA	alt_5880_new	20	16	30	30	16	18	17	15	13	21
TCCTGGTTCTGTTTTT	alt_5880_new	188	105	202	143	74	119	84	114	91	130
TGAGTGTTGCGTGTGT	alt_5880_new	27	22	38	30	17	33	22	34	26	27
CAGGAAAGTTCTTGGT	alt_5880_new	151	93	157	147	81	159	107	144	94	111
TCTGATTTTTTTATCA	alt_5880_new	22	12	23	14	6	23	13	22	8	15
ATGCCTTCAAACCGTT	alt_5880_new	136	83	145	143	87	116	77	137	81	113
GCGTCAATCGGGATGT	alt_5880_new	23	16	40	35	12	36	22	27	21	27
CGCCTAAAGTGAAGCC	alt_5880_new	120	78	137	127	80	116	78	134	82	124
GGAGTGCCCGTGACGT	alt_5880_new	67	27	110	87	39	66	44	89	41	79
ACATTCCGAACCTTTC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TGCCCGGCCGCGTTCC	alt_5880_new	221	146	242	229	157	184	153	212	163	199
ACTTAAACGTTACCGG	alt_5880_new	32	11	37	27	19	29	20	29	6	13
ATCCAGCTGTGGGAAT	alt_5880_new	65	60	69	68	51	57	51	54	44	63
GGTACTCTCTGTTAAA	alt_5880_new	112	68	148	126	58	121	79	114	67	121
TGTAGCCAAGTATTGA	alt_5880_new	43	29	78	43	46	38	30	43	37	36
TTTACTGTACGATATG	alt_5880_new	18	6	9	15	8	3	8	12	4	7
GTTGAGACTCACACTC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TTACGCTAGCAACCGA	alt_5880_new	44	46	82	80	42	60	42	53	42	62
ATCTGACTTTCGTCGG	alt_5880_new	3	1	2	1	1	0	1	1	1	0
GGTTATGGGCAATTAA	alt_5880_new	29	23	52	29	14	42	22	26	14	39
ATTGATGGATGTTCGC	alt_5880_new	31	5	24	34	22	35	7	27	19	35
GCGAGGTCCGTAAAGA	alt_5880_new	217	119	271	276	105	217	126	209	132	171
TACATGTTGCTTTTGC	alt_5880_new	11	12	11	22	12	14	10	10	10	10
ATGTATTCGTTACGAT	alt_5880_new	27	17	38	37	11	30	12	26	17	22
ATCTTGTCTCAGCTCG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TAATATCCGATACTGG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
AGAATCATCGTTATTC	alt_5880_new	26	8	30	26	12	18	15	18	16	14
CTGGCTGTAAAGTTGA	alt_5880_new	337	182	429	318	190	349	172	313	174	289
ATGCGTCAAGCGTTAT	alt_5880_new	306	181	363	289	175	297	178	270	187	279
ATGGACAAAGTCTCGG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TTCAACACCCGTTCAC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TCAAAGCGGTCTTCCG	alt_5880_new	83	40	109	90	48	78	49	81	52	60
ACCATATGGTTCCCCC	alt_5880_new	0	0	1	0	1	0	0	0	0	0
GCATGGGGTGTTGAGG	alt_5880_new	0	0	0	0	0	0	0	0	0	0
GCGTCTTTCCGTTTGG	alt_5880_new	4	3	6	13	3	12	6	1	3	6
ATAAGCTTGAAGCATT	alt_5880_new	91	29	86	86	41	60	41	50	48	51
TGGTGGCCTCCGGATG	alt_5880_new	85	41	80	79	44	88	40	67	50	84
TGCTCGTGCGCCGCCA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TGTGGCGTCGCCACTG	alt_5880_new	82	36	61	64	51	51	37	53	37	58
TGTTGTTTGGCCAATG	alt_5880_new	128	81	170	148	89	138	88	132	87	114
GCCGCACGACTTGCTC	alt_5880_new	0	0	0	0	0	0	0	0	0	0
TACTGTGAAGTTTTAA	alt_5880_new	0	0	0	0	0	0	0	0	0	0
AGACGGTCTGCAACCA	alt_5880_new	58	17	71	60	29	45	33	60	27	44
CTTAGAATGTCATATG	alt_5880_new	117	56	121	116	60	96	71	103	68	88
CTGTGCCGTTGGGTCA	alt_5880_new	26	5	21	13	8	15	13	14	5	16
GATGTGTATGCCACGG	alt_5880_new	111	58	115	112	77	98	62	92	76	87
ACGAATATGACCAAGG	alt_5880_new	9	3	3	7	1	3	4	10	1	5
ACCGTCTCTTACATCC	alt_5880_new	114	76	135	122	67	101	72	127	62	105
TGCACCTTAGTCTTGA	alt_5880_new	80	51	90	107	40	82	59	83	58	74
TCCCGGTGCTCATTAC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CAGATAGCATTCCTCC	alt_2558_fdr	65	42	60	44	34	51	42	34	38	41
CACTCGACGATCGCTA	alt_2558_fdr	20	20	28	18	17	24	25	32	27	18
CCGTAATCAACTCGTT	alt_2558_fdr	0	8	8	6	6	4	7	2	3	3
AACGTACGAGGTCAGT	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
AAATCAACGTCGAATG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CAATTTATATGTTCTA	alt_2558_fdr	63	45	65	47	67	46	54	58	70	53
AGACTAGACCTGTTTC	alt_2558_fdr	30	24	24	27	29	24	31	19	22	19
TTCTACCTGCCTTATT	alt_5403_upstream	16	20	27	23	20	17	15	20	23	17
GGTTGGGAGTACGCGG	alt_2558_fdr	4	2	5	4	1	7	1	6	3	1
GCGAGACTTTCGCTGT	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCAGCCGTCAAG	alt_2558_fdr	22	10	15	16	17	22	16	11	11	11
ACCTTTAGTGAGTCCT	alt_2558_fdr	9	17	17	14	11	8	4	17	11	6
TCTTTTAAGCATGACT	alt_2558_fdr	52	43	78	60	37	46	54	47	42	48
CGGTGTCTACTGTTAT	alt_2558_fdr	84	50	96	72	67	47	63	69	62	66
GCACTTGGGTAGTGCT	ref_2558_fdr	53	69	50	43	63	57	64	44	72	38
ACCGCGCTCAACGGCA	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGTTTCAGTCATT	alt_2558_fdr	25	36	33	35	57	21	48	29	45	22
TGCGCGTTCGAGCAAG	alt_2558_fdr	42	40	36	39	36	38	28	40	32	30
GCGGTTTACTGCTGCG	alt_2558_fdr	67	36	68	65	46	58	53	51	46	54
TAGCTTTGGTGTGATA	alt_2558_fdr	28	9	20	26	21	16	21	28	29	22
GCTTTTCATAGCGTTG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGAAATGCTTTGA	alt_2558_fdr	112	100	129	137	80	111	96	107	116	90
TACTGTCAGAGATAAC	alt_2558_fdr	66	45	79	50	48	52	46	67	52	53
CTAGCTCCCTTTGGTC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
GGGGATTCGCTAGGTC	alt_2558_fdr	7	6	5	1	2	4	7	8	3	10
ATGTTCTCCCCGGGTT	alt_2558_fdr	0	15	3	3	6	0	13	0	11	0
AATGACTTTCCTATAG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
GTTGATGGTACTTTCA	alt_2558_fdr	12	12	12	16	18	13	12	16	15	22
CATCTCGCAGGTTGGA	alt_2558_fdr	32	26	48	37	27	36	29	21	23	37
TCTGTGCTCATACGTC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTAGAGCTGAGTC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTATTCTGTTCGC	alt_2558_fdr	4	6	5	3	11	3	7	4	8	2
AGTATAGCTTTACTTC	alt_2558_fdr	4	3	5	10	4	2	9	2	2	2
TATTTCTCAATATCTT	alt_2558_fdr	85	45	85	69	51	63	49	74	59	63
TTGGTTCTTGGTCGGC	alt_2558_fdr	35	24	38	34	37	29	27	32	30	32
CCATGAAGCACGATTA	alt_2558_fdr	63	47	79	63	41	58	49	64	62	58
GCGGCGGGCTGACCTC	alt_2558_fdr	25	31	44	22	24	21	20	31	31	23
CCGCGCGTAGCTTCCG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCTATGTACCATT	alt_2558_fdr	17	17	27	35	31	15	15	23	15	14
ATTTGTTCCGCGTCTC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
TTACTATAGTGCTACG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CACGTCCGGTGGCCGT	alt_2558_fdr	6	4	5	5	6	2	5	5	1	4
AACTTCAATTTGCGTG	alt_2558_fdr	8	4	12	5	6	13	2	7	8	7
TACATGCCATGTGATT	alt_2558_fdr	116	75	132	91	81	116	60	97	95	100
GGCCTTCATCGCTGAG	alt_2558_fdr	32	12	37	28	14	25	14	28	29	14
CTCGAAATTAACTTGA	alt_2558_fdr	33	31	44	35	38	36	51	37	44	25
AGTTGTAGTCCATCTC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
ACAATACGGACCCGGA	alt_2558_fdr	100	84	108	108	91	108	104	105	97	94
CTTACAGTTATATCTC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCCTAGTTTTCTC	alt_2558_fdr	83	61	103	88	82	96	67	81	66	58
TCCAGCTTTAGTCTCT	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTGCGCTTCGGTA	alt_2558_fdr	34	37	49	28	34	36	44	48	26	33
CCGACTTTGGCAGTGG	alt_2558_fdr	57	36	66	50	48	53	52	30	54	49
CGTTCAATTTCGCAGG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATTCTTAAATAT	alt_2558_fdr	5	3	4	9	11	4	8	5	7	1
CGATGAAAAGCAACCT	alt_2558_fdr	80	52	79	83	55	71	60	59	65	53
GCGGTGATTGGCTGGG	alt_2558_fdr	27	34	46	38	14	32	28	25	46	28
ATCCGTAATCCGGTTC	alt_2558_fdr	92	76	91	85	71	84	78	95	93	84
TCTATGCTCATTGTGT	alt_2558_fdr	123	97	138	133	106	154	98	125	113	104
GAAGAAAGCCTATATC	alt_2558_fdr	43	40	46	45	21	25	25	31	45	36
TTGTTTCATACGACAT	alt_2558_fdr	4	14	9	14	5	9	8	8	8	6
GATTCGGCAAACAGGT	alt_2558_fdr	2	1	2	2	0	0	1	5	1	2
GAGTAATGTTCACTCA	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CGCGACTTCTTGCAGT	alt_2558_fdr	25	37	35	20	37	23	27	21	30	44
TCTGTGCCGTTAGGGA	alt_2558_fdr	74	44	68	78	42	61	52	67	52	40
TTTGTCTAAAATCCTT	alt_2558_fdr	25	16	27	21	16	11	12	16	27	11
GTCTGTCAGCATCTCC	alt_2558_fdr	2	4	3	2	11	3	2	3	7	3
AGTGCAAGGTTCGCCC	alt_2558_fdr	31	12	19	20	16	22	17	14	21	17
TTCCTTGAGGTCATTT	alt_2558_fdr	96	73	129	113	78	115	83	93	88	86
TGTGCTGCTAAGCTTG	alt_2558_fdr	11	11	25	15	9	13	21	12	23	15
CGGCATCTCCACTCGG	alt_2558_fdr	6	2	7	5	3	9	5	4	4	5
CGTCTCAACGAGTAGC	alt_2558_fdr	20	27	34	15	24	29	32	22	27	20
GCGCCTACACATTCTG	alt_2558_fdr	74	97	116	102	91	105	101	73	85	74
ACGGGACGACACTGAG	alt_2558_fdr	6	7	13	5	4	16	11	7	9	7
CCCTTCTTTCCCCCGC	alt_2558_fdr	56	63	75	58	48	69	64	53	64	55
CCGGCCCAAACGTCTA	alt_2558_fdr	14	8	15	17	7	17	11	23	15	18
AATTTGGTTCATAATC	alt_2558_fdr	11	11	5	8	7	7	9	4	15	4
TTGTTATGTCCAGGCA	alt_2558_fdr	40	34	36	59	26	39	23	35	26	28
TTTTCGGTCTTCGGGT	alt_2558_fdr	42	48	58	71	50	38	39	55	75	39
CCCGTAATTCGAGGCA	alt_2558_fdr	9	9	8	13	13	7	9	9	15	4
GGTGCGAAGACATGCA	alt_2558_fdr	35	26	35	12	25	30	25	17	27	18
CGCTGGCGGCTATGGT	alt_2558_fdr	30	34	58	36	26	32	45	36	41	30
TAAACGATGTACACCG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
GATCGCTGCTCTGGCG	alt_2558_fdr	10	17	9	11	19	8	31	17	21	3
TGCGTAAATTCGCTGA	alt_2558_fdr	21	15	26	21	27	13	21	16	16	13
TCTGGTTCTAAATAGT	alt_2558_fdr	8	12	19	17	10	11	15	19	15	21
CTGCCGTATCGGCTGC	alt_2558_fdr	39	26	38	33	32	35	39	34	25	22
TAGATTACTAAATGTG	alt_2558_fdr	3	9	13	7	10	13	10	7	3	8
TTGAAATCGCACTTCC	alt_2558_fdr	14	41	32	30	41	15	44	23	46	25
CTTCTGGCGGTTTTGG	alt_2558_fdr	5	2	2	6	1	2	3	8	7	4
GTGGCTCCAGACTTTT	alt_2558_fdr	82	79	96	94	94	80	90	72	69	54
GGTGTTCATATTTTGA	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CCAGACAATGTATGGT	alt_2558_fdr	7	49	15	13	47	13	34	10	53	4
CTCAAAAACCTTTCCG	alt_2558_fdr	3	4	6	5	7	8	3	4	4	5
TGATGGGAGGGCTATG	alt_2558_fdr	27	21	44	19	20	21	26	24	27	24
TGACCCTCCCACGTCT	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTTGGCCTTCGAA	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
CATGCGAGGGCGTCTC	alt_2558_fdr	31	32	36	33	21	39	19	38	40	30
GGTCTTCGGCTCCCCG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
TGTATCGCGCTGATAC	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCCGCTAGTGTTC	alt_2558_fdr	18	9	18	9	7	15	11	8	16	11
TGACATCCCAACGTGA	alt_2558_fdr	1	6	4	2	4	4	0	4	4	1
AAAGAACCTCTTGTAG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
AATGGATGGAACCGTA	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCTCCCGCGCGTC	alt_2558_fdr	41	18	40	32	17	22	13	23	29	30
AACCCCGTCTATTTCT	alt_2558_fdr	3	6	6	5	4	3	15	6	10	3
TCTAGCCAACTGGTTG	alt_2558_fdr	0	0	0	0	0	0	0	0	0	0
ACATTATCCGGTCGCG	alt_1617_reverse	70	69	83	63	81	49	88	63	77	55
GCCGTGGCCACGGGCG	alt_1617_reverse	21	38	28	30	40	20	30	29	35	25
AGAATAGACGCTGCAT	alt_1617_reverse	31	53	45	42	51	36	62	28	50	31
CTATGTACGTACATTG	alt_1617_reverse	6	5	3	3	12	6	6	10	5	2
ATCCTAGACGTTGAGA	alt_1617_reverse	7	6	3	3	2	4	3	4	7	8
ATCTACAATGAGGGTT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TCCAAGCCGAGTTCTC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTGGGACGGTTTT	alt_1617_reverse	42	67	56	39	41	41	42	26	56	35
AGTGGTACGCTTTCTT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GGTAAGGTGCATCTGC	alt_1617_reverse	14	28	33	22	33	17	37	15	27	20
TTGACAGATTCCTACA	alt_1617_reverse	0	0	2	2	1	3	1	1	1	0
ACGATCAATGTGTGTA	alt_1617_reverse	5	5	4	0	2	2	6	1	3	2
CTTAGATGCATTCTGA	alt_1617_reverse	1	0	1	0	0	0	0	2	2	1
CTGCGCATTGTTTCCG	alt_1617_reverse	51	108	64	61	99	68	131	65	120	64
GGTAACGATCCCGGGA	alt_1617_reverse	33	42	62	45	45	36	33	29	43	34
GTGCTCGGTATGACCG	alt_1617_reverse	18	24	19	25	15	17	22	15	17	24
GTTATCCCCACACGTA	alt_1617_reverse	12	29	18	18	18	27	18	18	21	22
GGCGGCGAAGGGCTCT	alt_1617_reverse	1	4	0	4	0	2	1	0	3	2
GCACCACTCATGCGTG	alt_1617_reverse	41	25	36	33	44	19	45	23	34	35
TCGTCACTCTAAGAGC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GGACGTTCATAGTGGT	alt_1617_reverse	28	29	34	20	51	21	31	18	33	22
ATCCCTCCCCGCGCGT	alt_1617_reverse	8	27	6	0	27	3	25	12	28	8
GCACCCATGTTCACAT	alt_1617_reverse	17	11	13	8	19	13	12	9	18	10
CTTGTGCTCTCGCCCC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GATCTCATCCTTGCCG	alt_1617_reverse	26	29	26	22	26	20	30	25	27	17
AAGCGTTTTTTCGGTC	alt_1617_reverse	12	21	16	12	19	12	14	13	23	14
GTGCTTCAAGGAGAAA	alt_1617_reverse	33	48	23	22	48	30	56	27	47	43
TGTTGGCGAGTGGCCC	alt_1617_reverse	30	23	25	25	38	21	32	23	40	23
ATTTCCGCATTAACTG	alt_1617_reverse	39	45	58	55	44	39	46	43	44	35
CCTAGCACGTTGTCTT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGCTTTACGGTCA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCCCTGTGGCGCG	alt_1617_reverse	33	23	22	17	29	29	32	13	34	28
GTGTAAGCCGCCGTGT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCAGCGATGTCGC	alt_1617_reverse	11	21	20	21	30	19	18	20	20	24
TTCTGCCATTAAATTG	alt_1617_reverse	9	32	20	20	25	14	17	14	16	17
TCTTTGGGCTCTTGCT	alt_1617_reverse	55	48	47	59	65	51	50	49	63	36
TCCTGTTAACACCGCT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AGATGGGACTATCTGT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCGACGTATATCT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCCTATCGTAATT	alt_1617_reverse	14	27	34	40	36	21	35	34	43	26
TGGTTGCAAATCAGTC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGGCGGTTAAAA	alt_1617_reverse	73	78	76	63	76	82	70	51	90	51
ATGTGTGAGGCCTAAT	alt_1617_reverse	25	28	37	23	36	16	44	26	38	24
GTGCGCCAGTTAGGCT	alt_1617_reverse	66	65	64	49	87	56	75	58	81	58
TTAGTTGCTTACACGT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTAGGTTCTAATG	alt_1617_reverse	57	104	75	63	109	72	90	58	80	58
TAACTGCCTTTGTGAA	alt_1617_reverse	8	7	8	8	10	5	5	9	11	6
AATTTTACCACACGAG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCGCAATAACCGTCAT	alt_1617_reverse	28	36	29	26	45	27	41	25	49	28
ACCACGTTATACTTCC	alt_1617_reverse	37	51	40	50	49	33	53	33	67	24
GGTCCTATACTCTAGA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTTAATCGGAACGAAC	alt_1617_reverse	103	150	143	137	146	110	155	108	157	92
CTCTGTGACGTCTGTA	alt_1617_reverse	52	73	68	62	81	48	69	43	68	44
GTCCACACAAGCGCCT	alt_1617_reverse	15	25	25	19	32	19	20	22	24	15
ATGGGTTATGCATGAA	alt_1617_reverse	3	5	5	12	5	6	6	6	6	4
AACGGAACCCCTCCTA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTAAGCGTGTAAT	alt_1617_reverse	9	7	8	10	13	9	8	5	0	7
CTTTTCAGCTTGGTTT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATTACTGATTTTGGGT	alt_1617_reverse	18	24	12	26	23	18	13	23	17	11
CGTAGCCTTCAGCCTT	alt_1617_reverse	4	5	5	7	4	7	3	4	9	2
TCAGTGAATCGACTTT	alt_1617_reverse	13	21	20	10	13	13	24	13	22	13
CCGATCGTACTTAACA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGCTCCTAAAAAC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCATATAAGGCGT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AGTGAGCCACGAGCTC	alt_1617_reverse	19	44	35	22	29	27	57	19	47	21
TTAAGCCAATGCATTT	alt_1617_reverse	12	25	15	13	20	11	20	15	21	6
GCAACCCCGCGTCCTC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCCACGTTATACTTCC	alt_1617_reverse	0	1	0	0	0	0	0	0	0	0
TTGGGAGATGCTATCT	alt_1617_reverse	13	10	8	6	9	5	6	4	14	7
GGCAAGTTACCATTCA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AAAGGTCAAGTTACGT	alt_1617_reverse	13	12	14	17	10	11	9	10	12	20
GAAGCCGAGCACATGT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCGCTTATAATGT	alt_1617_reverse	3	8	4	3	13	5	6	6	11	5
AATTGCTAATTACGCT	alt_1617_reverse	8	13	7	3	18	7	14	9	23	13
AACGTAAGAGTCCTGC	alt_1617_reverse	14	12	19	11	14	5	22	5	19	8
GAAGGAACGAATACAT	alt_1617_reverse	20	17	13	25	29	12	26	24	21	24
ACTACTATTGCAGAAT	alt_1617_reverse	136	172	144	132	170	131	179	135	168	108
GAATCAGGTCACACCC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGAACGTGCCTTC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTAACATGATACT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CACGGAGAGTCGTCAA	alt_1617_reverse	23	17	18	15	26	14	27	11	21	17
ACCAATGATAGCCCAC	alt_1617_reverse	2	8	4	5	3	1	2	1	5	3
GTCGTCGATCCTCCTC	alt_1617_reverse	12	17	23	20	20	12	25	18	25	20
GCCCTGCTCGCTGAGT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTTGCGTGCGATT	alt_1617_reverse	17	20	17	17	13	22	16	8	20	24
TCAGCCACCTTTGTAC	alt_1617_reverse	7	12	4	5	15	5	17	6	20	3
CGTGCGGTACTAGGGT	alt_1617_reverse	10	7	9	7	20	7	15	2	11	8
TAAGGAACGCTCTCAA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTGTCGTACCGTG	alt_1617_reverse	38	52	43	41	62	46	53	32	66	39
TGTTTTGCGTGTCTAG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTAACCCCCCTCA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTAATATCTGACG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTGATTCGACGTA	alt_1617_reverse	16	21	11	10	13	11	18	7	15	12
GCGAGCTCGCCGCAAC	alt_1617_reverse	12	20	14	16	24	19	24	11	24	9
TATCTAGAAGTCGCAT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCAGACGCTCCGC	alt_1617_reverse	19	32	23	19	27	18	39	22	40	15
CCAAGTCTTCCAGAAT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AAGATAGGGCGACAAT	alt_1617_reverse	47	61	49	54	47	42	41	34	66	42
AGATAGGCCCCACCCT	alt_1617_reverse	29	38	52	34	28	27	39	27	34	36
CCTGATATAGGCTAGT	alt_1617_reverse	53	73	68	59	77	64	75	60	109	49
TGGTTGCACATCAGTC	alt_1617_reverse	154	152	171	163	158	123	227	117	200	121
TGGGCCCTGTGGCGCA	alt_1617_reverse	10	6	12	9	4	3	9	10	6	2
AGAATGCTACGTACTA	alt_1617_reverse	5	7	7	3	6	9	5	8	8	2
AATACCAACCGTATAT	alt_1617_reverse	16	12	22	14	26	17	24	15	25	23
TCTCGCAAGGCACTTG	alt_1617_reverse	57	74	82	53	85	62	79	35	83	40
AACTCCTTCACTGTGA	alt_1617_reverse	24	16	17	20	13	11	26	15	23	17
TTGTTGATTTTGAAAG	alt_1617_reverse	26	50	39	34	31	18	36	44	44	25
TGTTATAACCTGGGCT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTGGTTCAATCC	alt_1617_reverse	1	2	2	0	2	1	6	0	3	2
GCCTTAAACAATGGCT	alt_1617_reverse	17	24	26	15	21	18	15	9	27	11
TTTGGGGGGTCCCGTC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTTCTACATACAT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CACGTGGAAGCGCAGC	alt_1617_reverse	31	36	50	34	44	36	43	39	45	37
ACGAAAGAGTTCCGGG	alt_1617_reverse	79	90	76	70	78	54	84	61	94	69
GATGTGCCAGAATAAG	alt_1617_reverse	8	8	9	12	10	11	20	10	12	7
GGCCCCAATTTGTCCG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGGTCTCCCTCGG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCTGATAACGCGC	alt_1617_reverse	3	3	7	1	5	1	11	5	5	4
TCTGGTTGTACAGGCG	alt_1617_reverse	48	48	66	44	63	46	59	51	72	33
TTACTTACTGCCAATA	alt_1617_reverse	20	31	22	17	39	20	40	15	34	29
TTTCCGAGATTGATCC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TAGGAGACCGGTTAAC	alt_1617_reverse	5	10	18	16	16	10	19	3	17	9
TATAGCCCTATGCTAC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CATTCTGTCTAGAGCC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CGCGAGCTTGTCCCAC	alt_1617_reverse	77	75	96	77	105	63	100	93	90	82
GGGGTTGACAGCTCGT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
ACATTTCTTTTGAGTC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCTTCCGTATATT	alt_1617_reverse	1	3	5	4	2	6	5	0	5	0
GGGGCCTACCCGTTGC	alt_1617_reverse	21	19	16	13	18	16	29	17	23	18
TTTAATTTCGCCGTCC	alt_1617_reverse	70	84	72	80	65	59	74	69	76	43
GTCCTAGCAAGGGCCC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTCTCCTCTTAGT	alt_1617_reverse	17	14	13	20	17	14	20	9	12	16
GTGCGAGTGAGAATAC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTGCTTAGCTCTC	alt_1617_reverse	29	19	36	25	44	33	29	30	32	23
CATGTACGTATATCTT	alt_1617_reverse	15	19	16	6	11	15	16	16	7	16
CTCTAGAGGTCGTCCA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TCATCAGTGAAGGAGC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AATACGTACTCAGTAC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TAACAAAACCATCGCT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGTACCTGTTTTC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGTCCTGGATTCC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGAGTGGACCACG	alt_1617_reverse	9	26	24	20	16	16	21	17	25	6
TCCCTGCGGTCGACCA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAATGAAGGCGCG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CTATGTATTCCGGGGC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
AATGGGGTGAAAAGGT	alt_1617_reverse	2	7	7	5	3	3	2	0	5	3
TTAATAGTTTGAGATG	alt_1617_reverse	5	4	6	1	6	5	7	2	8	5
TGGTTGCACATCAGTT	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCGTGGAGCCAGG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
GCGATCTGCTACCTGA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGGCTTATCAGGG	alt_1617_reverse	38	37	48	43	50	51	60	30	61	37
TGTAGTGTGATACGGA	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CCAAAATTTTGTCAAT	alt_1617_reverse	28	96	42	21	131	24	80	29	95	28
AACTGTACATACTGGT	alt_1617_reverse	15	24	17	11	17	19	17	13	15	4
CTATCACGTCCTCGCC	alt_1617_reverse	8	12	15	7	12	5	10	10	7	5
TCCATCGTCTGGATTG	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGGCACAGGCATT	alt_1617_reverse	7	5	10	6	2	5	3	2	4	6
ACGTTTCACATGTTAG	alt_1617_reverse	18	16	20	4	22	10	13	6	26	11
ACTTTTAGCCCAGCAC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCACCTTTTTTGC	alt_1617_reverse	0	0	0	0	0	0	0	0	0	0
TAACCTCAGCGTCGGT	alt_6048_new	49	59	64	48	66	63	57	49	66	56
TCGCTATGTCAAGGGC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TATAATCCCCCCGAGT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TTATTAACCAAGATGA	alt_6048_new	54	33	82	47	40	46	52	52	51	41
CGTGTCTAGGATATAC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
ACGGTTTTCGGCTTTA	alt_6048_new	71	105	82	60	86	68	107	49	93	64
GGGTTCACTTGTTATG	alt_6048_new	34	36	45	38	21	39	39	25	49	25
TAGGACTATGTGCCTT	alt_6048_new	44	116	75	55	90	37	94	47	122	45
CATCGAGTTAATCCGG	alt_6048_new	145	150	145	133	143	137	111	137	145	114
CCGGGGTTTGCCTGAC	alt_6048_new	16	23	15	7	12	21	14	18	25	11
GACTCTTTACACTCCT	alt_6048_new	1	4	2	0	6	0	2	2	2	1
TCGAAATCTTTCGATT	alt_6048_new	55	67	51	51	59	60	54	46	59	38
CAGAAATCAGAGGATA	alt_6048_new	8	9	8	10	8	8	11	8	6	3
ATTGGATTTATTTATA	alt_6048_new	67	53	62	82	40	61	69	54	58	44
ACTTGGTAAATCGTAA	alt_6048_new	28	16	22	28	30	16	21	24	24	29
GGCTCGGGGTCTTTTA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
TCTCTGTAATCCTTTG	alt_6048_new	35	14	44	38	20	27	29	14	31	38
GTAGTTTTAGGGCATG	alt_6048_new	42	27	39	45	35	28	46	45	37	21
CTGTATCGAACTTCGT	alt_6048_new	4	11	7	9	4	4	18	2	14	8
GGGTAATTGTACAGGA	alt_6048_new	8	4	5	6	6	3	11	9	7	7
ACGATAGTACACCGCC	alt_6048_new	19	33	14	8	24	6	43	17	37	18
TGAGATTTCTCACTGC	alt_6048_new	26	22	28	27	26	30	36	26	27	20
ACATAACTCCTTGCTT	alt_6048_new	1	3	2	3	0	4	2	0	1	0
GTTCGCATGGCTGTAT	alt_6048_new	66	54	83	82	49	59	72	53	60	75
TTCGTATCTTGTTTTC	alt_6048_new	25	33	35	22	22	25	16	31	22	22
ACATGGTGCTTCATAG	alt_6048_new	30	30	50	69	38	51	49	32	48	49
CGGGTCTTACGTATGT	alt_6048_new	1	3	2	2	5	2	3	2	5	9
TGTGCGTGTGTTAGCC	alt_6048_new	22	23	23	27	38	21	30	28	30	20
TCTAACCGTAGGCAAT	alt_6048_new	58	60	70	52	69	63	76	52	59	51
CATTACGTGGCATGGT	ref_6048_new	19	14	21	13	24	9	15	12	19	15
AATTATAAGTTATATA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TGACCTATTAGAAACT	alt_6048_new	1	2	2	4	2	1	3	0	4	2
TTGGTCTTCTAGCACG	alt_6048_new	25	31	31	36	30	16	46	19	33	33
AACGGTGCTTGTATCC	ref_6048_new	152	145	161	132	153	116	166	115	187	100
CGACGGTCTGCTGTCT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TATAACAGATCGTTTT	alt_6048_new	27	27	48	36	33	27	35	22	34	29
GGTATCTCACAGCTAC	alt_6048_new	26	23	29	16	17	20	21	19	19	18
TGTTACCCATCCCTAT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
AACCAGGTCCCAACTT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TCATATGGAGTGTACC	alt_6048_new	41	46	57	52	65	40	52	49	49	48
ACTACAAATTGGTTTA	alt_6048_new	15	14	23	21	13	16	17	8	18	10
ATTCGGATTATAGTTC	alt_6048_new	11	8	15	14	18	14	11	16	11	14
TCTCTGTCTCTAGAAC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GCTAGACATCCGCGCA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TTTCAATGACGTAGGT	alt_6048_new	122	101	154	101	99	94	97	123	111	99
ACCTACTGGCCATCGT	alt_6048_new	57	55	54	35	53	34	46	62	68	39
TTACTTATCTCATAAT	ref_6048_new	102	89	79	102	94	101	94	85	124	76
GGAGTCTGTGTTAGTG	alt_6048_new	81	78	98	85	78	75	108	82	101	71
TTCTATGATGGCTCTT	alt_6048_new	5	8	13	14	7	7	11	10	9	13
TTCATCCCATTTATGT	alt_6048_new	54	54	48	57	56	36	74	32	46	31
GTTGATTAACACTTAT	alt_6048_new	49	47	56	40	64	37	47	65	69	35
TGTTTACACCGCGTAT	alt_6048_new	17	13	24	21	15	15	19	20	23	19
GTACCCTGACTTACTG	alt_6048_new	88	125	127	109	139	88	126	86	133	82
CGAAAGGTGTGCTTCA	alt_6048_new	137	211	175	196	201	136	232	151	245	139
ACGAGTGCCCGCTACC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
AGATTAGTTGTACCGG	alt_6048_new	3	5	7	9	7	6	5	3	7	3
CTATGGGACATTATTA	alt_6048_new	44	53	63	33	47	35	36	40	52	37
CTCGCGGTGGTAAGCT	alt_6048_new	11	17	14	22	21	16	22	16	19	12
CTACCAACATCTTCGT	ref_6048_new	71	75	68	59	87	54	71	77	74	69
ATTTCATCGAAATTCT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GGTCAACAGCGGCCAT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TAAACAAAATCGTGGA	alt_6048_new	200	164	279	246	175	213	197	204	231	193
AATCTCACAGTACCGA	ref_6048_new	55	54	69	54	65	51	51	57	63	50
TTCAGATGCATGCCTA	alt_6048_new	30	45	48	41	51	29	40	34	43	28
CTGTGTTTATGATCTA	alt_6048_new	162	135	162	139	150	127	129	143	129	133
GCTGGGAGTCGCTTCG	alt_6048_new	17	18	11	18	18	25	18	22	23	26
ATTTGGTGTATTTTAT	alt_6048_new	4	5	5	4	6	9	11	5	11	8
AAATCCAGCCCGTGTC	alt_6048_new	103	106	114	131	139	106	121	104	151	99
CATGGGAACTGCCGGT	alt_6048_new	23	18	23	18	16	16	16	19	8	17
CCCGTACTCCTTGGGG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TCCTTACGTCACGTGG	alt_6048_new	90	82	102	78	66	95	71	74	76	82
CCAGAAGCTATGCATA	alt_6048_new	2	26	14	5	17	5	24	7	11	6
CCTCTAGAACAGTTGA	ref_1654_missing	0	0	0	0	0	0	0	0	0	0
GCTGGCCCGTTTGTAA	alt_6048_new	29	43	38	33	41	25	36	30	34	33
CGGCGAAGTTCAGACT	alt_6048_new	6	10	12	7	4	6	9	12	17	11
ATCAAGGGGCTTGGGC	alt_6048_new	6	4	4	3	4	4	2	2	6	0
TCTGAGATCAAAAAAA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
AAACGATAAGTGCCTC	alt_6048_new	11	17	15	20	14	13	16	13	11	23
AGCCCAAACAGCTCTA	alt_6048_new	21	24	34	31	17	26	36	37	31	20
CGGATTACGGGCTGAC	alt_6048_new	141	109	152	94	125	111	89	110	114	95
TTATGCCTGTAGCACC	alt_6048_new	50	46	66	63	71	88	75	48	70	66
CCTTTTTACCGCCCTA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GTTTACAGACAACCTC	alt_6048_new	7	17	6	4	13	11	10	8	11	12
TACTACTATGCAATTT	alt_6048_new	4	19	14	12	18	18	8	13	13	9
TAACGGCTCGCTTTGC	alt_6048_new	23	25	17	25	35	20	20	15	28	26
CACCCTCCATGTCGCG	alt_6048_new	19	28	28	19	23	25	25	21	15	13
CGGTCCCGTATTAGAT	alt_6048_new	13	16	21	13	17	12	20	12	21	11
AACCATCTTGGTAATT	alt_6048_new	106	112	143	114	138	112	128	118	134	102
TGTATTTACTGGGTGC	alt_6048_new	6	5	5	5	4	4	4	2	3	3
GTAGGGAATACCCCTT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TTAGTAAGAGAACTAT	alt_6048_new	4	9	6	7	5	4	9	4	6	10
ATACTCAGAGTCTGGC	alt_6048_new	10	13	7	10	10	7	9	6	14	9
TCAGGTAACAGCTAAT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
AAAGTCCGCAACTCGG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GTATAAGATATCCCCC	alt_6048_new	0	6	5	4	3	3	6	1	2	3
TACATGGGCAGTTCTA	alt_6048_new	13	8	10	12	9	13	14	1	8	8
GGCAAAACGCGGAGAT	alt_6048_new	56	88	97	68	53	66	84	66	81	67
TACCAACCATGTGTAG	alt_6048_new	4	15	15	10	14	5	14	8	12	6
CATCAATAACGCGATG	alt_6048_new	41	39	35	42	26	38	19	33	31	29
GGATGCATGACGCGGT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
AACTTTTGTAATCTTA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
AGGTGACGTAGGAGCC	alt_6048_new	53	38	44	61	38	45	45	42	46	51
AGTGAATCACTTGGAT	alt_6048_new	3	5	3	2	4	2	0	6	1	2
TTGTGAACTCCCGCGC	alt_6048_new	22	28	44	31	45	24	42	38	31	26
CCTCGCTTTGGGTGTG	alt_6048_new	24	42	27	35	37	40	46	20	33	19
ATGTTCCCCACCGCTC	alt_6048_new	3	0	4	12	6	0	8	3	7	3
TTATATGAATCTCATT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
CTGTGGTATCCGCTCG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GCATACAACCAGGGAG	alt_6048_new	16	16	30	30	23	28	24	28	31	19
CAGGTCGTAGGCCTGA	alt_6048_new	8	13	10	9	12	6	11	5	10	6
CGAGGCTATCGGTCAT	alt_6048_new	29	17	28	24	24	29	12	19	19	19
ATGGACAGGATCTTGG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GACGCCTACACCGACA	alt_6048_new	17	14	19	31	19	13	23	21	20	20
TTTATCATCACAATAA	alt_6048_new	79	101	104	102	105	70	98	71	123	76
TATTGATGGCGGGGCC	alt_6048_new	3	4	11	7	1	4	3	4	1	5
TGCATTTGGTCGCCGA	alt_6048_new	4	12	9	12	3	2	9	8	3	7
TGCTAGGCTATGCTAG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GGTACCTACGTGAGTC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TTTCATATTTGCCGAG	alt_6048_new	25	13	27	19	22	13	16	21	23	21
AACTCCGTAGCTTAAT	alt_6048_new	21	19	26	18	27	15	22	18	23	18
CTCTGGTTTTTCAACG	alt_6048_new	35	41	30	32	35	27	42	28	44	21
TGTCTTTTTTGTACAT	alt_6048_new	1	3	2	1	4	7	3	3	3	0
ATTTTCGGGCGTGCTC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
ACGCCTGGTGTTTTTG	alt_6048_new	27	24	35	20	24	22	30	32	31	18
CGTGGAGTATAGTAAG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GCCATTCGACCTCAAA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TGCCCTATCTTTAGAA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TGTAGTCTAACTTAGC	alt_6048_new	0	1	0	3	3	2	2	0	0	0
TCTTTTCAGGGCCCCG	alt_6048_new	37	42	42	47	46	46	31	32	35	47
TTGCGTTCTTCAGTAC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GATTTTGTTCCCACAC	alt_6048_new	2	4	3	6	3	4	5	4	2	2
ATTTCCCTAGTGAGAG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GTGGCGTCCGGAATTG	alt_6048_new	30	18	34	31	27	43	29	25	30	25
TGCTGGCGTAAACCCA	alt_6048_new	30	36	41	45	32	31	50	28	45	27
ATTCGGGCTTGGTTCT	alt_6048_new	22	25	31	20	28	12	32	15	19	25
ATTGAGTCTCGCCCGC	alt_6048_new	8	13	23	21	14	19	21	18	14	10
CGGTGCGACGTTTATC	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GCTCAAGGTTATAATG	alt_6048_new	41	53	69	54	52	50	48	47	55	51
GCCTTGACACACTCTG	alt_6048_new	70	68	93	100	96	46	76	64	78	67
CTCTGCACCTATGAGT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TGGGTCAAGTATGTCT	alt_6048_new	159	139	207	146	164	160	166	163	148	143
CTCGGGTTAGAACCAG	alt_6048_new	36	27	39	30	33	34	37	32	36	33
GACTCTGGCACGAAAG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GATGATGCTACCCAGT	alt_6048_new	61	58	65	63	87	52	80	42	62	49
TTTTAATTCCTGGTCT	alt_6048_new	20	20	33	20	20	25	21	23	25	16
GGGGCAACTCCCCAAT	ref_6048_new	87	99	104	97	113	88	125	70	112	80
CATGTTAAGTGTCAGT	alt_6048_new	39	54	51	39	52	40	52	50	41	31
CACCAACGAGTAATTT	alt_6048_new	3	3	4	2	3	2	8	3	0	3
AGTTTTGGGGATGTGG	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GTGTACCCGTCGGACC	alt_6048_new	1	5	3	1	3	2	8	1	6	1
ACGGTCTAAACTTTCG	alt_6048_new	8	15	5	6	17	9	14	3	19	8
GATGTAGGGCTTCGTT	alt_6048_new	76	61	70	68	65	69	76	65	76	56
CTCTGAAAAACAAAGT	alt_6048_new	2	3	3	6	1	1	1	1	1	0
CTGTGTCGACTCACCA	alt_6048_new	0	0	0	0	0	0	0	0	0	0
TCATAAGTAGGTAAGT	alt_6048_new	64	43	87	55	40	53	60	50	51	57
TCTCTTTACTGGGGGG	alt_6048_new	34	23	33	27	24	20	29	23	37	31
TTGCCGGCACTGGTGC	ref_6048_new	32	46	44	25	53	29	42	22	47	32
TGATGTATATGTGTGT	alt_6048_new	24	16	17	14	7	16	32	10	19	9
TCTCTCGGCTTGGACT	alt_6048_new	22	12	21	19	16	16	24	22	19	18
TCCTATCCCCATATAG	ref_6048_new	30	43	35	36	31	24	44	27	38	35
TCTAACGACTCTCGTT	alt_6048_new	0	0	0	0	0	0	0	0	0	0
GGTTCATTGTTAATCC	alt_5615_new	10	11	15	6	13	11	20	6	15	15
GCCTCTGCGTAGGCTT	alt_5615_new	44	71	69	70	68	63	68	70	81	54
CTAGGTCCCACAATCT	alt_5615_new	77	111	90	87	99	65	111	78	121	66
CTTTGATCTGGTCTTC	alt_5615_new	0	0	0	0	0	0	0	0	0	0
AATGTGTCGTGCGTAT	alt_5615_new	20	34	29	13	28	20	33	15	17	20
TGATTAACTTAAACGC	alt_5615_new	99	119	132	105	91	95	108	86	95	79
TCCTTCTATTCTTCTC	alt_5615_new	12	34	20	15	15	26	20	23	30	16
TAACTAATGCCTCGTC	alt_5615_new	0	0	0	0	0	0	0	0	0	0
ATGAGGCATCAACAGC	alt_5615_new	107	137	133	92	139	66	135	96	160	103
CCCGACTCTTTCTTAG	alt_5615_new	2	3	1	2	1	3	3	3	3	0
TTGCCACGGCTCGACT	alt_5615_new	22	19	25	24	24	20	28	18	27	22
CAGTTAGTGACGCATT	alt_5615_new	33	52	33	20	29	20	38	23	34	22
TTTGGCATGAAGGGTC	alt_5615_new	319	473	443	350	439	354	452	305	437	313
CACTCCAGCAATTTTT	alt_5615_new	1	2	4	2	6	0	0	1	1	2
AATTGGGCCAGTTACT	alt_5615_new	36	53	28	25	36	40	49	22	41	35
AAATCACATTTATATT	alt_5615_new	0	1	0	2	2	2	0	1	2	2
CCATGTCAGACAAGTG	alt_5615_new	80	125	100	79	138	96	145	78	167	89
ACGCCTCGCAAGATCC	alt_5615_new	39	54	30	48	50	36	54	23	48	27
TAGCCTTAGTATCTGA	alt_5615_new	0	0	0	0	0	0	0	0	0	0
ATACAGAGGGCTCGTG	alt_5615_new	0	0	0	0	0	0	0	0	0	0
ATGTATCCATGAGAAG	alt_5615_new	0	0	0	0	0	0	0	0	0	0
GATGATTTGCTTACGC	alt_5615_new	80	138	111	83	120	76	139	76	110	83
GGCTTTGTTATCGGGT	alt_5615_new	20	30	17	13	24	11	19	8	30	21
GGTTCCCGTGGAAATT	alt_5615_new	19	11	9	18	25	17	24	18	21	18
AGTGGCCCCCTCAGGA	alt_5615_new	60	87	74	68	73	78	68	53	71	50
TTAACGGTTGGCGCAC	alt_5615_new	17	27	24	31	21	12	33	16	22	19
GACTATTTGTTACACC	alt_5615_new	47	48	47	46	57	39	50	31	82	35
TCTCGTCCTCAATCGG	alt_5615_new	4	9	5	2	3	3	11	2	9	4
CCTCCGCCAGGATCCG	alt_5615_new	20	46	20	15	48	24	56	21	45	20
CGGAAAGGTAAGACAG	alt_5615_new	0	0	0	0	0	0	0	0	0	0
TGTCCCCTCTACCCCG	alt_5615_new	4	9	5	5	16	4	11	9	10	2
GGGGCGTTTCCATTTT	alt_5615_new	62	48	74	48	41	50	71	40	72	42
GTAAGATGCGGTTGTA	alt_5615_new	76	74	64	65	87	49	71	62	64	65
CCCCCGGAAAGATTAT	alt_5615_new	86	84	109	99	116	96	112	96	124	68
GTGTTGTTCTCTGTAT	alt_5615_new	30	36	40	39	54	38	32	34	31	29
ATCATCTCCGAATTTT	alt_5615_new	187	255	251	197	242	189	259	198	246	195
GATCCCTTGTTCAGAA	alt_5615_new	0	0	0	0	0	0	0	0	0	0
TAATGTTTCCATCTTA	alt_5615_new	0	0	0	0	0	0	0	0	0	0
ATCTAATGAGGCAATG	alt_5615_new	0	0	0	0	0	0	0	0	0	0
GTCAAAGGCTAACTTT	alt_5615_new	40	38	38	41	41	34	46	47	56	44
CGCCGCGCGTTCTGCC	alt_5615_new	30	47	41	29	38	31	36	23	35	22
ACTGGCCGTTAATGCA	alt_5615_new	0	0	0	0	0	0	0	0	0	0
AACGTGAAACCTAGCC	alt_5615_new	40	67	64	53	66	46	63	53	64	43
ATTCGACGAACTGCGA	alt_5615_new	13	8	4	11	6	9	13	10	13	10
ATGACTTGAGGAATCG	alt_5615_new	38	46	41	38	40	34	45	35	46	40
GCGCTTAACCTTTAAC	alt_5615_new	33	45	36	23	46	25	44	19	49	28
CAGAAAACTGTGAGAT	alt_5615_new	10	5	4	4	3	9	4	4	4	5
GAACTGATTTCTCCAG	alt_5615_new	115	128	116	102	136	77	154	86	122	88
TAGCGGACCGAGTAGT	alt_5615_new	11	12	11	9	10	8	14	12	16	19
TGGACAATTGGCGCAT	alt_5615_new	1	3	3	4	4	2	3	4	2	2
ATGTACGGAGGTTATG	alt_5615_new	0	0	0	0	0	0	0	0	0	0
CTTGCAAGCTCCTTAG	alt_5615_new	0	0	0	0	0	0	0	0	0	0
TCTCTCCTACTCACCC	alt_5615_new	32	90	46	41	99	37	88	26	109	37
CCTTCTTATCGTCTAA	alt_5615_new	37	55	45	38	55	32	45	21	57	35
GTCCAACTGGTGCCCA	alt_5615_new	0	0	0	0	0	0	0	0	0	0
TTAAGATGTGTGGCGC	alt_5615_new	23	18	17	13	19	17	18	15	26	10
GGTTACGACCAGTTCC	alt_5615_new	81	113	118	97	111	99	126	103	115	94
GATCAAACATGGAATT	alt_5615_new	60	66	54	56	52	49	51	67	57	39
GAGCCAAGGAGATATA	alt_5615_new	0	0	0	0	0	0	0	0	0	0
CGGACGCCCTTTATCT	alt_5615_new	105	121	130	93	117	88	112	96	119	88
GATTTACTTTAGTCAG	alt_5615_new	104	134	121	93	127	99	157	75	138	79
GCTATCATGGATTATG	alt_5615_new	69	64	91	95	91	67	101	70	108	64
ACGCGAATCTGCGCTG	alt_5615_new	102	128	124	141	126	111	119	88	125	102
TTTTGTGCCTTGTTCC	alt_5615_new	36	64	49	62	39	38	60	31	63	40
TACTCCCGTCTTGCGC	alt_5615_new	0	0	0	0	0	0	0	0	0	0
GTATGCGGTTTCCCGC	alt_5615_new	116	137	139	102	131	100	156	88	167	101
TCTTACTCATATACCA	alt_5615_new	19	27	25	29	36	29	47	34	48	16
AAAATCAATGGTTCGA	alt_5615_new	59	80	92	65	85	63	77	60	98	71
TTAGGGCCTAATTAGG	alt_5615_new	43	35	44	30	26	37	35	30	29	21
GTACAAGCTGCTTCAT	alt_5615_new	79	86	87	80	99	87	89	66	79	64
TAGTTATAGTCTGCGT	alt_5615_new	0	0	0	0	0	0	0	0	0	0
TGCCATTTTAGTCTCC	alt_5615_new	199	239	214	184	259	155	211	179	250	168
GAATCCTTTGAGTACA	alt_5615_new	14	11	17	15	27	11	16	9	16	11
ACCCTAGATAGTTGAG	alt_5615_new	37	58	42	44	60	31	61	34	64	33
AAACTTATTTTGTCTT	alt_5615_new	0	0	0	0	0	0	0	0	0	0
CGCCCGTCGGCTAAAA	alt_5615_new	41	116	41	32	128	25	113	22	127	19
TGACTCCAATCTCATT	alt_5615_new	36	29	60	49	42	43	69	57	39	41
CACTGATTCGGAGACG	alt_5615_new	41	49	37	44	47	46	58	40	63	41
GCCTAGAAAGAGCGCT	alt_5615_new	39	53	70	47	79	36	72	48	62	42
CTGTCTTATCGTAACC	alt_5615_new	0	0	0	0	0	0	0	0	0	0
TGGCACATGTGCTCCT	alt_5615_new	16	14	32	14	23	17	26	15	19	13
TTTTATCAAATGATAT	alt_5615_new	16	24	19	9	22	22	15	16	16	10
GTCATCGCGCAGCCTA	alt_5615_new	0	0	0	0	0	0	0	0	0	0
TGAGCGACTCCTCTAT	alt_5615_new	33	37	43	23	51	32	62	27	31	31
GTGTGTGGCGGCTCTG	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCTTTATTCGTCA	alt_5392_fdr	91	34	98	69	29	91	34	60	53	79
ACGTTCCAAGCCTGCT	alt_5392_fdr	297	120	297	234	125	221	136	224	125	239
AGTGTTGCTCATTAAG	alt_5392_fdr	52	32	66	39	29	51	32	46	29	61
CTTCTAAGTTTTTGAG	alt_5392_fdr	161	89	163	109	77	125	91	154	72	123
TACAACACTATGTTAT	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTCATATCTTGGGGTG	alt_5392_fdr	255	87	263	201	109	221	107	226	128	229
GCTCATGCTTATAAGA	alt_5392_fdr	21	12	18	15	10	15	10	13	10	10
GTAGTTCGTAAAGCTC	alt_5392_fdr	25	8	20	21	16	14	13	21	18	17
TTTGATGTTTAGAGCG	alt_5392_fdr	53	20	46	45	20	36	25	32	24	32
ATGTCATAACTTTCGT	alt_5392_fdr	70	28	81	66	20	62	31	38	30	56
TGAGTGAATTCTGTCT	alt_5392_fdr	34	20	37	33	16	19	20	16	19	24
GCTACGTAATCTACCT	alt_5392_fdr	50	15	57	33	19	45	22	27	9	39
GTCCGTGTCTTTAGCA	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTGCTTTTTTTCT	alt_5392_fdr	9	4	13	12	5	7	8	2	3	4
GTTATGGTACTGATAC	alt_5392_fdr	281	122	323	222	149	298	142	276	125	271
CTTTTCGTATTTAAAT	alt_5392_fdr	174	109	192	123	104	159	85	131	73	148
CCCAAGAATGCCTCCC	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
GCCTATGCGACGACTT	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGACTATGTTCTT	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCGCCTACTTAAG	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TACTCAGGGGAACTAA	alt_5392_fdr	33	15	53	31	15	29	19	31	20	34
AATTTGCTATTTGATC	alt_5392_fdr	55	32	63	44	43	65	38	43	28	41
TGTGCCCCGGGATAAA	alt_5392_fdr	149	69	179	132	101	172	87	136	78	128
GGTTTGCGCGCCCTCG	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGGATCCGGTAGT	alt_5392_fdr	305	137	308	218	133	266	130	229	106	255
TGTATAACTCTAGGCT	alt_5392_fdr	256	117	285	183	132	191	141	214	129	206
CCTATTGTTAATGCGA	alt_5392_fdr	21	18	13	12	12	26	4	15	12	22
TCGCCGACTCTACTTA	alt_5392_fdr	0	0	0	0	0	1	0	0	0	0
CCCCGCTGTTGTTACT	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
CTCATATAAATAGTGC	alt_5392_fdr	15	14	31	16	15	19	14	27	15	24
CAAAGTCACTTCGGTG	alt_5392_fdr	25	5	22	8	6	23	10	19	11	13
CCGATACAACGGTAAA	alt_5392_fdr	98	65	95	60	65	97	82	64	54	81
TTGCTTGTCGGGTATT	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGCCCGTCCGGTT	alt_5392_fdr	32	12	29	34	14	36	13	42	19	28
TGGGAGCCTTCATTTG	alt_5392_fdr	0	1	1	0	0	2	1	1	0	0
GGCGGGGTCAGTCCCA	alt_5392_fdr	74	27	85	37	31	54	40	48	22	52
CGCTCTGGCAGGGGAC	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCGCACAAGATTA	alt_5392_fdr	691	337	774	545	333	654	313	632	330	627
CCGGATTTCTTTAATT	alt_5392_fdr	11	35	11	15	38	14	28	6	39	9
ATCTCTACCCTACATA	alt_5392_fdr	62	66	86	62	56	62	65	73	64	67
TATAATTGCTTCGGCG	alt_5392_fdr	117	50	141	66	75	127	46	108	81	106
GTGACACCCGCGCAAC	alt_5392_fdr	115	36	119	90	57	84	60	74	49	114
CATTTGTAAATTATGC	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCACGTCTGTCCA	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTGCATGCACTG	alt_5392_fdr	73	36	90	76	38	70	53	73	41	77
GTCGTAGCACTAATTA	alt_5392_fdr	65	44	82	61	61	64	47	64	49	61
GTGGTTCGGGCCAGAC	alt_5392_fdr	54	25	69	55	19	52	34	47	31	48
GGAGTATGCTGAAGTA	alt_5392_fdr	20	7	22	18	4	16	5	17	9	15
TGTGCCCCCCTAGCCC	alt_5392_fdr	62	15	73	48	36	48	17	40	29	47
CTTTCGCCGCCCATGA	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGTTTACAATGCT	alt_5392_fdr	45	22	58	26	17	34	27	37	21	36
CTGCTACTGTCCATTT	alt_5392_fdr	35	14	62	38	18	34	30	36	15	33
TAGTACGGAGAAAGAC	alt_5392_fdr	49	18	46	27	25	35	18	26	21	22
CTAAACACACTTTTGT	ref_5392_fdr	109	66	91	87	72	72	88	76	69	88
CTTCCCTGCTCCTCCC	ref_5392_fdr	62	64	79	54	64	68	77	66	59	63
GCGCCGTGTCTTTTTT	alt_5392_fdr	75	39	68	47	37	76	36	54	39	66
TCTCTATCTAGTAGAG	alt_5392_fdr	61	34	65	55	38	47	29	45	31	67
GCCCCATACAGCGTAC	alt_5392_fdr	127	66	149	97	46	111	58	101	84	110
TCTGGCACCTAGAACA	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCCGTGTTATGC	alt_5392_fdr	30	10	31	15	19	21	17	28	14	27
CGGTTCCGATCGTTCC	alt_5392_fdr	5	16	6	5	11	5	12	8	16	7
CATTATTGTCTTTATG	alt_5392_fdr	34	16	37	23	14	22	13	21	25	23
AGTACCTTGTTTTAGC	alt_5392_fdr	14	5	11	10	7	8	1	13	1	10
ATAATAATGGTTACTC	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCAGACGCATTGG	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
GTACACATTGGATCAC	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
AAAACGGTCCGTCTGG	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTCATCCGAGAAACAT	alt_5392_fdr	77	48	109	73	58	64	56	91	60	83
GTTTACGTCTGCATCC	alt_5392_fdr	7	5	17	11	3	17	7	8	5	8
GTCCGGAACTCTGGAC	alt_5392_fdr	20	13	40	20	15	21	16	31	12	30
GTCGTGAGAAATAATT	alt_5392_fdr	34	25	33	32	14	29	23	24	10	29
ACGGCACCCAAAGCAT	alt_5392_fdr	116	49	145	83	66	126	61	106	61	109
AGCTAGTTATTGCAAC	alt_5392_fdr	14	13	19	19	9	25	11	12	6	11
CGCCTGATCGCATAGG	alt_5392_fdr	34	14	48	24	25	33	19	25	20	41
ACTGGTATAACGGAGG	alt_5392_fdr	76	28	74	56	28	45	51	51	34	56
CAGGCATTAAGGCATT	alt_5392_fdr	111	32	134	82	35	93	61	74	46	85
CGGATAGCGGCGTATC	alt_5392_fdr	83	25	98	53	25	61	28	67	38	64
CCTACGCAACCGATCG	alt_5392_fdr	29	51	20	24	51	15	65	22	61	19
CGGCGGAAAGATCTTC	alt_5392_fdr	18	13	46	29	16	23	16	19	18	18
GCACAGTATTTTTCGA	ref_5392_fdr	317	116	338	192	129	275	130	262	161	243
GCAACTTGGATGTTTT	alt_5392_fdr	52	24	76	62	31	52	24	46	27	52
GTTTGTTTAGCCACTG	alt_5392_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTTGGCCTGATCT	alt_5392_fdr	239	111	269	158	122	226	113	194	130	216
TTCTTCGGGCCTATAG	ref_5736_new	40	7	31	24	11	35	6	38	15	23
TACTGCTCATTACAGA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
AAAAGCGCGTTTAAAG	ref_5736_new	91	26	95	94	24	87	28	65	34	56
AATTACAAAAGCAAGC	ref_5736_new	61	13	62	41	18	48	15	56	13	38
CAGCGTGACTACAGTC	ref_5736_new	111	41	104	104	25	103	39	75	38	93
GGATCAACCGACGTCA	ref_5736_new	179	52	216	202	44	186	43	204	48	144
TGTCTAGGCTTTATGT	ref_5736_new	330	160	392	404	159	323	149	315	168	289
TCTACTGAAGTATTTT	ref_5736_new	334	104	436	329	116	339	118	317	142	302
TTCCGTGTATAACCGA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
CCTTTCTTGCGATCTC	ref_5736_new	223	72	278	234	73	247	70	260	75	227
GACTGACTGTCCATGT	ref_5736_new	229	71	274	222	67	191	66	189	67	151
AATGTGGGGTATCAAC	alt_5736_new	111	38	152	153	39	151	43	135	38	113
GAAGGTTTACTCTGTT	ref_5736_new	42	16	60	40	13	39	17	46	17	33
GTAACGTCACTCCGGT	ref_5736_new	182	72	216	223	56	154	86	199	100	173
AATCCGCAGTTGGATT	ref_5736_new	44	18	49	46	21	39	13	42	24	32
TGGCTTAGTGGGACGC	ref_5736_new	12	5	10	6	1	10	3	7	3	6
GAACCCTCTATGGTAT	ref_5736_new	36	11	45	45	12	42	17	34	8	34
TTCGACCATTGAGTAT	ref_5736_new	13	8	18	12	3	19	9	22	11	11
GAGTCCGCCAAGGGGC	ref_5736_new	0	0	0	0	0	0	0	0	0	0
GAGCTACCCTGGTCTT	ref_5736_new	84	49	117	96	45	84	35	104	48	96
GTGTTACGCGTGGCAG	alt_5736_new	583	186	689	622	181	560	169	547	199	488
TACCAATCGCTGGGGC	ref_5736_new	25	5	22	20	10	13	7	19	5	26
CGCCGGATAATTGGAA	ref_5736_new	81	32	94	85	25	72	22	84	23	77
TAAACTCCAGACTTTA	ref_5736_new	127	33	135	122	34	127	36	118	43	112
TTTCTAAAACCGTATT	ref_5736_new	49	18	61	52	16	42	15	35	21	47
TGTCACTGGGGACGGG	ref_5736_new	707	212	905	764	219	637	242	659	211	585
ACTTATTTCGTTGAAA	ref_5736_new	490	153	650	492	165	433	155	416	156	425
GTTGATCTCGTCCATG	ref_5736_new	41	29	54	33	19	40	15	39	13	34
CACAAGCTATAATCGG	ref_5736_new	31	13	36	23	13	25	5	19	16	27
ATTGATGTCTCGTCAT	ref_5736_new	46	7	36	48	17	40	15	33	16	36
ATCAATTTTATCTCTG	ref_5736_new	850	227	967	781	225	779	229	760	256	710
TATTCCCTGTAGTGAA	ref_5736_new	35	18	56	49	26	44	24	51	22	28
GCTTTCCGGGGTCTCA	ref_5736_new	31	10	29	29	13	33	6	30	12	24
TTGTTGTTCTTTCGTT	ref_5736_new	39	6	31	34	13	36	5	34	9	27
GAATTGGACCATCTGG	ref_5736_new	301	115	374	303	104	303	109	299	78	258
GGTTATTCTCGCTAGA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
ACGTGTGATTTTACGG	ref_5736_new	83	24	112	92	27	86	27	86	36	62
CACCCTGTCTGCCCTG	ref_5736_new	602	171	762	622	199	651	213	606	212	503
AGTGCCTTGGCAGCGT	ref_5736_new	50	24	75	69	20	57	14	47	26	53
GAGTTCAATAGGACAT	ref_5736_new	19	3	28	25	4	18	3	25	7	12
CCTGCATCCCTGTAGT	ref_5736_new	229	180	226	206	218	173	183	196	206	157
TCGGCCCCCTTATCAG	ref_5736_new	76	32	121	92	28	101	23	87	38	64
GGTTAAACGGCTTACT	ref_5736_new	0	0	0	0	0	0	0	0	0	0
GCAGATGCATCTTTTT	ref_5736_new	182	66	263	189	78	193	64	228	62	179
CCTGCTTGGAGTCTGC	ref_5736_new	104	33	146	107	19	96	37	92	30	72
CACCAGTTCGCGAGCG	ref_5736_new	16	6	11	12	5	20	0	6	5	4
GTAGGACCCTGTAACA	ref_5736_new	120	39	154	137	42	136	44	126	48	126
TGCGGAATAGATTCTC	ref_5736_new	150	57	188	185	60	145	64	166	49	118
ATTTAAGGGTAGCGTT	ref_5736_new	301	81	330	301	79	281	87	270	90	227
TTTGTTCGAATACGTT	ref_5736_new	198	66	244	205	90	200	79	200	82	160
GCTTACATGGCTTTCT	ref_5736_new	210	47	273	211	78	200	59	202	69	194
ATGTATTATTTCCTCG	ref_5736_new	159	59	184	155	49	119	63	150	73	130
CCGTGAGCGCTACCAG	ref_5736_new	105	29	137	111	49	95	36	75	44	85
CACTTCACACATGAGG	ref_5736_new	19	7	16	26	8	15	9	18	8	17
CCGTGGAAGGGCGCAC	ref_5736_new	78	46	118	106	65	74	60	79	46	91
ACCAAATCCCAAGAGG	ref_5736_new	25	20	40	30	14	32	6	27	14	24
TTCCTTAAAAATGAAT	ref_5736_new	112	29	105	85	30	83	26	105	27	59
TCTATGTTGCAGCCTG	ref_5736_new	315	103	398	372	116	317	108	374	105	277
CGCCTCACCAGCGTTG	ref_5736_new	93	32	129	101	36	110	44	88	33	86
ACTTGACCTAGTCATT	ref_5736_new	221	70	225	248	91	229	95	209	90	185
AGACGTCAAGTCCTTT	ref_5736_new	0	0	0	0	0	0	0	0	0	0
ATCTCAGGCTAGTCGC	ref_5736_new	18	7	38	24	5	18	11	28	10	27
TCTTTAAATTATCCAT	ref_5736_new	133	44	156	146	51	126	51	127	48	123
AAAATTATTTGATTGG	ref_5736_new	0	0	0	0	0	0	0	0	0	0
CCGCCAGATGCAATAG	ref_5736_new	7	0	9	10	1	7	5	2	4	5
CTACCTCCCTCGGTGT	ref_5736_new	0	0	0	0	0	0	0	0	0	0
CCTCTCGGCATCTATA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
GCTTCCTCCAATTCTA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
ATATATGTGAAACTTC	ref_5736_new	228	69	274	284	81	232	98	225	92	186
GGCACTCCCTCGCTTG	ref_5736_new	4	15	7	4	27	10	21	6	24	4
TGAGGTCGGATTTATA	ref_5736_new	273	81	351	331	94	287	67	245	90	247
ATGAGTAAGTTGTTTA	ref_5736_new	312	106	438	357	91	290	112	273	125	266
GCCGATGACGAGTACC	ref_5736_new	0	3	0	0	0	0	0	0	1	1
TACCGCTTATCAGGCA	ref_5736_new	126	47	149	153	42	100	41	129	37	82
TTAGGCCTTCTACTGG	ref_5736_new	152	53	161	132	45	124	51	153	73	125
TGCGCCTTGGTATTAC	ref_5736_new	20	9	32	29	6	19	8	23	8	19
GCGAAGCGCCGTAAGG	ref_5736_new	367	99	448	390	105	359	122	400	122	309
TTGTCATCCAGTTCGT	ref_5736_new	65	32	96	77	23	49	23	47	34	53
ACTTTGAACGCAGTGC	ref_5736_new	134	62	168	141	34	117	36	137	55	113
CGGATCGTTCTGTGCT	ref_5736_new	6	11	10	13	14	4	11	6	17	10
TTTTGTTCAACGTTCC	ref_5736_new	44	18	42	58	10	36	12	42	18	31
ACCCTCCCTTATGTTG	ref_5736_new	252	96	314	274	97	255	106	242	100	216
GTCAGCCGGGACATGC	ref_5736_new	0	0	0	0	0	0	0	0	0	0
CGATGAAATAGGGTAC	ref_5736_new	0	0	0	0	0	0	0	0	0	0
GGTTAGGCCATGAACT	ref_5736_new	200	86	305	222	79	222	99	181	78	193
TTTACAGTACTTTAGG	ref_5736_new	64	21	61	64	24	65	24	58	15	43
CACAACCAATTTAACT	ref_5736_new	53	27	45	45	9	41	14	60	17	52
CTTCAGATTTACTTGC	ref_5736_new	6	7	17	9	5	10	1	3	5	8
CATATGCAGGTATGCG	ref_5736_new	11	5	16	17	5	9	6	3	5	15
AGTTTTCCATGCCGGG	ref_5736_new	292	119	319	295	96	222	101	246	99	239
CTCTATTTTTTAGGTT	ref_5736_new	39	15	53	47	14	45	14	34	13	49
GTGCCCCGCTATTGGC	ref_5736_new	55	19	72	72	14	49	25	57	23	48
AGCTTTTCTCGCGTGA	ref_5736_new	15	6	23	13	4	14	2	25	5	17
GGATTGAAGATGGCAT	ref_5736_new	46	24	58	36	18	44	29	32	18	28
ATCGACGTTACCTGTT	ref_5736_new	179	71	229	186	90	169	85	205	75	178
CCTTCATGCCGCGAAT	ref_5736_new	129	58	180	149	70	130	69	157	69	95
TAAGGGCGCTGTACCT	ref_5736_new	111	28	136	140	37	96	32	114	32	84
GCCTCTGACGCTCTAG	ref_5736_new	0	0	0	0	0	0	0	0	0	0
ACCAGTCCCACATCCC	ref_5736_new	3	1	1	2	2	1	2	6	6	0
TCAGCCATTTAATGGG	ref_5736_new	18	14	18	20	10	14	9	21	14	11
TTTCCATTAGTACTTA	ref_5736_new	87	32	107	118	54	79	50	74	45	59
GCGTCTCCTCGAATTG	ref_5736_new	48	25	80	69	30	60	31	48	16	43
GTCGGCGTTCCATTCT	ref_5736_new	0	0	0	0	0	0	0	0	0	0
CGGCTATAACGATTTT	ref_5736_new	0	0	0	0	0	0	0	0	0	0
GCAGGAAAAGTTTATG	ref_5736_new	13	5	19	10	6	13	7	11	9	12
GTCTCATCTACAGTCC	ref_5736_new	35	15	67	50	17	44	13	61	14	50
GATTCCTAGGATACAC	ref_5736_new	46	20	63	48	23	51	13	57	14	53
AACCTCCTTATCACGG	ref_5736_new	77	30	100	99	39	81	28	80	29	73
CTCGGATAGTCCCCGC	ref_5736_new	0	0	0	0	0	0	0	0	0	0
CGGTTGATCCGTATGC	ref_5736_new	195	42	190	173	49	180	71	150	65	140
ATCACTAACTTGAACT	ref_5736_new	0	0	0	0	0	0	0	0	0	0
TGTGCTTCTCTTTTCC	ref_5736_new	112	22	145	144	24	129	14	127	39	103
GGGTCTAGAAGCAGGT	ref_5736_new	0	0	0	0	0	0	0	0	0	0
GGAATTGGGGGGTAAA	ref_5736_new	79	17	86	63	22	73	25	66	21	60
TCAATCCAATTGTTTA	ref_5736_new	96	32	114	82	27	93	37	92	35	89
ATAGACGACTTACATG	alt_5736_new	331	118	416	377	106	319	152	304	104	300
AAGGCAATGCTACTCA	ref_5736_new	10	1	22	18	8	12	2	13	3	15
TTAGCAGTTGTAAGAT	ref_5736_new	17	5	10	13	4	10	6	15	3	4
CGGGGTCGGCACATCC	ref_5736_new	194	66	233	164	45	177	66	174	62	147
TTGGCCTCCGTATCTT	ref_5736_new	292	93	390	269	115	317	99	308	93	286
GGACTGTATCAACTGG	ref_5736_new	53	26	75	70	13	48	20	59	28	61
GCCATTGTCCAACTTA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
GTCGGTTGCCCTCATA	ref_5736_new	358	88	360	337	110	334	117	290	81	284
GAGTGGGACATGGTCC	ref_5736_new	237	83	295	259	86	242	82	206	79	217
TTCCGAGCTTACCGTA	ref_5736_new	96	32	131	108	36	90	34	99	28	89
GTCGGCCTAACCTACC	ref_5736_new	14	1	12	19	5	10	4	19	7	7
CCACAGAGTCTCTTAC	ref_5736_new	246	80	263	212	85	208	82	204	77	183
ACTGGTCCCATCCGCG	alt_5736_new	62	18	45	49	17	60	19	35	16	39
TTCATTAGCGGGCTTT	ref_5736_new	81	37	94	69	15	83	24	52	26	55
CTGCAATCAAGAACCA	ref_5736_new	32	17	59	45	16	35	37	56	13	34
AATGAGCATTTCATGG	ref_5736_new	59	18	64	61	18	42	24	51	14	46
CACTGCATAAATATAC	ref_5736_new	0	0	0	0	0	0	0	0	0	0
CTGATCATGGGGTCTT	ref_5736_new	61	16	69	74	7	57	19	53	9	46
ATGCCCACAAATATAA	ref_5736_new	24	3	18	18	4	16	3	13	6	11
CAAGTACAGCGCTCCC	ref_5736_new	0	0	0	0	0	0	0	0	0	0
ATAATGAGTAGTGAAA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
TGCGCGAGACAGGGTT	ref_5736_new	154	54	218	198	49	195	67	134	55	156
CTGTGCATTCTATTTA	ref_5736_new	89	28	106	98	30	86	46	89	33	90
CGGATTTGAAACTGCC	ref_5736_new	38	18	57	35	13	39	18	56	18	42
ATTGTTACATTTTTAT	ref_5736_new	261	77	258	260	85	239	89	243	72	242
CTTCTTAAACCCGGTA	ref_5736_new	632	214	853	721	210	631	261	673	227	581
TCACCTTGTCCCTGAG	ref_5736_new	813	236	914	865	248	736	242	696	267	710
TTAGGATTGGGTTCAA	ref_5736_new	0	0	0	0	0	0	0	0	0	0
TCGTAGTCTATGCGGT	alt_6001_new	33	20	28	24	20	26	15	20	25	26
TTAGATTCATGTGTGA	alt_6001_new	0	0	0	0	0	0	0	0	0	0
ATATTAAGAGGTGTTG	alt_6001_new	103	79	107	95	76	58	67	94	76	87
GTAGTGAACGTTTCAT	alt_6001_new	7	9	12	17	12	13	13	12	15	14
CTCGTTCCTTAACATG	alt_6001_new	44	37	30	37	24	28	34	40	35	33
ACGGTTGTCCCTGTGT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
CCTGGGGGTTTTTTCC	ref_6001_new	14	10	18	17	17	9	11	19	16	10
GTGGCGCAGTACGTGT	alt_6001_new	93	74	104	111	74	96	78	79	79	80
ATAACTATCCATTTTC	alt_6001_new	12	8	27	17	4	15	8	16	9	7
CTCTCGTGTAACTAAA	alt_6001_new	25	20	36	24	22	25	23	27	14	20
TGTGCCCAATTGGACA	alt_6001_new	105	108	148	136	128	125	101	128	125	120
TGGCAGCGCCCCATTA	alt_6001_new	81	42	100	87	46	64	51	62	43	85
ACCTGCGGATCGGTAG	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TATATTCCGACGCGGT	ref_6001_new	43	37	68	52	32	37	42	45	49	42
GGCCATGATATAGAAC	alt_6001_new	46	54	56	38	47	41	55	42	50	30
AGTGCTATGTTATTTT	alt_6001_new	61	45	60	74	35	54	59	63	46	51
GATCCCCCCTCTCGAT	alt_6001_new	28	19	36	37	29	27	34	37	17	30
GGCCGCAGAACGTCAA	alt_6001_new	4	4	14	5	8	3	7	8	10	11
GTCAGGGCTACGGTGC	alt_6001_new	96	73	127	112	92	112	69	96	74	101
GACAGGTCGTATGGGC	alt_6001_new	19	17	28	19	16	14	12	12	17	13
CTGCTCGTCATCTGAG	alt_6001_new	0	0	0	0	0	0	0	0	0	0
ACGCTAGTCTTTCTGA	alt_6001_new	92	64	101	78	66	82	52	68	93	81
TATGCCATGTTTGCAT	alt_6001_new	47	39	56	46	32	39	38	43	37	48
GCTAAGCGCCTCGGAT	alt_6001_new	32	17	45	46	24	37	21	46	40	29
TCTGTGTTTTCTGTCT	alt_6001_new	152	94	194	171	98	131	123	157	118	128
CTAACACACCGAGCTG	alt_6001_new	34	15	50	41	25	34	28	33	36	34
GGCTATAATCCTTCGT	alt_6001_new	39	24	40	22	15	22	20	19	26	15
CCTGACTCCGACGTTT	alt_6001_new	51	114	48	56	91	65	109	49	123	57
ACCGGGGCATCCTACA	alt_6001_new	43	50	72	44	42	56	54	52	52	43
GAAATCGTGTAGACCC	alt_6001_new	5	7	6	4	9	15	11	7	4	4
TGATCAAGTTACGTTA	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TTTTAACTGGCGGTTA	alt_6001_new	21	17	16	24	18	17	16	21	24	19
TCCATCCTAAGCCATG	alt_6001_new	28	20	31	22	16	30	26	17	23	15
TGTTCATTATCATCCC	alt_6001_new	12	56	19	19	53	12	67	18	53	8
CCACTTATCAGGTGAT	alt_6001_new	8	4	5	8	8	9	4	8	7	1
CAGATAGGAAAGCTGC	alt_6001_new	29	20	35	21	14	26	16	23	15	21
CGAGGGTGACTCGGCA	alt_6001_new	0	0	0	0	0	0	0	0	0	0
AGGTTGTTGTGGTTGC	alt_6001_new	60	43	66	75	34	43	45	50	35	65
ATACCTGGTACTGTCT	alt_6001_new	14	8	7	9	17	10	13	15	8	7
CCCAATTAGCACTGTC	alt_6001_new	0	0	0	0	0	0	0	0	0	0
GTTTAGACTGCGGCCA	alt_6001_new	76	50	86	59	47	81	50	56	49	79
TCGCCGCGAGTTTTCT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
ATAGTTCTCTGTCATG	alt_6001_new	24	23	30	29	10	18	13	22	18	19
ATTTTTTGTTTTTATT	alt_6001_new	0	0	0	1	0	0	0	0	0	0
GCACTTAAGGAACGTC	alt_6001_new	0	0	0	0	0	0	0	0	0	0
CAGCCCTATATGCCGT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
ATTTTCTGATGAGGTA	alt_6001_new	29	14	21	28	14	16	11	12	19	19
CGCTTATCATAAGGGA	alt_6001_new	19	13	32	23	19	20	19	25	21	25
TGCGGGTTTTCTGTAG	alt_6001_new	0	0	0	0	0	0	0	0	0	0
ACCTGGCATGTTGGTA	ref_6001_new	173	127	196	174	135	151	122	163	143	137
TGCAACAGTTCCACAG	alt_6001_new	0	0	0	0	0	0	0	0	0	0
ATTGCCCACCTCAGTC	alt_6001_new	0	0	0	0	0	0	0	0	0	0
AATATGCATTTCCATA	alt_6001_new	14	11	21	20	16	16	16	17	9	12
TGTTCCGACAATCTAT	alt_6001_new	82	52	86	99	65	101	69	70	73	84
AACCTTGTGTTCGAGT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
GGGAGGACTTTCTGTG	ref_6001_new	234	125	234	200	135	213	123	171	125	170
AACCACGCGAAATAGT	alt_6001_new	21	19	38	32	22	30	28	24	27	34
TTCCGTAGCTTCCGCA	alt_6001_new	106	68	145	107	68	98	70	106	63	89
CATTCGGTTTATCAGT	ref_6001_new	13	25	42	24	19	22	21	20	17	16
AGTGCTGCACTCGATC	alt_6001_new	0	0	0	0	0	0	0	0	0	0
GTAACTAGTTCAGCAG	alt_6001_new	26	20	36	21	22	24	12	14	24	16
GGACACTGTGTATACC	alt_6001_new	23	16	34	22	11	21	10	25	16	17
TACGACTGACGATATA	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TGTGCAGGTAAGTTTT	alt_6001_new	1	3	7	4	3	4	2	3	3	6
GATAGCTGGCTCTTCT	alt_6001_new	90	69	115	75	34	65	42	78	45	49
TTAGATCCCTATTCGG	alt_6001_new	6	8	8	0	5	4	6	2	5	5
GATCCCGTCTTCACTC	alt_6001_new	62	50	80	59	53	69	50	42	56	69
AGCGTCTGCGCCAGAT	alt_6001_new	1	1	3	1	0	0	0	1	2	0
TGACGCAGGTCTATTT	alt_6001_new	63	50	79	83	52	75	55	76	46	63
CCAGTCTCACAAATTA	alt_6001_new	58	103	98	97	98	68	131	83	117	63
GGCCGTTGAGATTGCG	alt_6001_new	48	25	45	63	28	52	27	51	30	37
CCCGGGAAGATAAGTA	alt_6001_new	1	4	1	2	0	0	0	0	4	2
CTGGTCACAGCGTAAT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TCAGAGGTTGCTTTGT	alt_6001_new	27	13	41	22	19	31	19	23	27	29
GATGCTCAACCGGTAA	alt_6001_new	13	11	18	17	17	17	9	9	11	12
TTGGACAATTCTAAGG	alt_6001_new	6	4	3	8	5	5	5	4	2	4
CCAAGTTTTCTCTTTG	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TGAGGGTGCTCTTCCG	alt_6001_new	55	44	76	54	39	62	45	45	44	49
CCACGAGTGCGTATGC	alt_6001_new	6	22	12	8	15	11	22	8	24	12
AGCTCTTAAAGTCATC	alt_6001_new	125	85	128	152	94	121	106	105	92	110
CGTCTCAGAATCCGAC	alt_6001_new	33	38	49	33	28	34	38	33	38	27
GCCTGCTCCTACTTTC	alt_6001_new	10	16	15	20	7	15	13	14	11	11
ACAATTGCCGTATACA	alt_6001_new	25	12	37	25	16	18	17	34	20	23
ATATGTGTATATAGAT	alt_6001_new	41	38	54	52	34	42	34	49	33	38
TTTTGCCGCTCCGTAC	alt_6001_new	36	33	39	35	38	26	29	32	38	28
TCATAGGGAGACGGTA	alt_6001_new	33	16	27	38	31	34	15	39	32	32
ACTTGGTAGCCGCGAT	alt_6001_new	24	21	27	20	18	19	21	20	29	22
AGAGGGGACTTATCTT	alt_6001_new	6	0	8	6	5	4	3	2	2	2
CCAAGGCTCAACTAAT	alt_6001_new	66	66	67	66	93	57	105	53	81	41
ACTCTCTAAGATCTAC	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TCTCGCATAACCGTAC	alt_6001_new	4	13	5	6	13	2	4	5	10	2
TAGTAGCTTAGCCTAC	ref_6001_new	331	318	343	326	314	264	310	294	339	257
GCTATTACGCTGAATT	alt_6001_new	69	45	74	56	42	57	38	78	59	68
TAGGTTTGGCGCCAGT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TTGTTTCCCGTTTGGA	alt_6001_new	26	15	30	32	17	35	16	24	18	23
ACTGGGTGCCCAGGGT	alt_6001_new	52	41	59	56	46	50	37	67	38	49
ACATGGTGCTCGTCTT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
ATTGTGTCGTAAGCTG	alt_6001_new	31	19	25	30	13	27	22	36	35	21
CATGTTTCGCCTGTCA	alt_6001_new	118	93	145	96	95	114	109	112	108	131
TTGGCTACACCATCGG	alt_6001_new	7	11	10	7	11	13	19	10	5	6
CCTATAGACTCCGACT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
CTTGGAGGTGTGCCCT	alt_6001_new	0	0	0	0	0	0	0	0	0	0
TGCCAGACTATCTGAA	alt_6001_new	70	46	76	58	53	66	58	78	49	50
CCTCTGTTCCCGAACT	alt_6001_new	239	193	286	247	189	194	226	226	220	200
AAGGGTGGCCCTATTT	alt_6001_new	15	9	19	24	8	13	17	20	10	21
AATGATACGAACGTCT	alt_6001_new	15	8	21	8	11	10	8	16	5	8
CCTACTTCTAGTGCTG	alt_6001_new	43	35	32	37	37	38	53	42	41	38
AGGTGCTTTTTTCTGA	alt_6001_new	0	0	0	0	0	0	0	0	0	0
CGGAGCGGGTTCAAGG	alt_6001_new	5	2	5	9	3	3	7	4	8	7
TTATATACGATATATA	alt_6001_new	7	6	5	5	5	3	6	4	2	4
CGTTTATCTACCTCGC	alt_6001_new	17	8	40	21	10	26	17	8	15	18
ACTATCGGGACAAAGC	alt_6001_new	29	12	32	31	10	26	16	29	25	18
GATGCGTGGACAAGGG	ref_5261_fdr	48	46	46	50	35	23	26	27	50	35
CAGCCCCCTTCACGAC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGTTGTGTAGCTT	ref_5261_fdr	0	0	0	0	0	0	1	0	0	0
GCAGTGATTTGTCTCT	ref_5261_fdr	16	28	22	19	25	26	39	24	23	25
GCCAGATTCAGGTTTG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTCAATCAATGG	ref_5261_fdr	11	5	13	12	4	12	7	8	12	5
GTCATGCATCCGCGCT	ref_5261_fdr	5	3	0	5	2	2	2	1	0	3
GACAGGTTGTTATAAG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGAAGTAAATCCT	ref_5261_fdr	23	24	38	43	23	25	22	29	28	20
CTTCCATTAGTCATTG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTCAGACAGATAT	ref_5261_fdr	49	59	73	56	63	61	57	62	72	48
GTTGCGTAGCATGCGG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCGGATGCGTGCC	ref_5261_fdr	41	71	55	55	71	40	57	53	61	43
GAACTCCTCGTGCTAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TAACCCTCTGTGATTC	ref_5261_fdr	13	7	21	12	10	9	12	12	6	8
AACGTCCTCTGGGGAA	ref_5261_fdr	31	39	55	36	36	39	41	25	38	24
AACGAACTCCGTCGTA	ref_5261_fdr	30	21	36	32	26	23	25	26	31	21
GGACCTGAAGATGTGT	ref_5261_fdr	52	39	47	43	33	48	52	35	38	31
GATCATGTTGATTGGG	ref_5261_fdr	13	14	23	16	16	16	12	8	10	9
TACGGACCGTCATTTT	ref_5261_fdr	1	3	3	4	8	4	4	7	4	3
AATACGCTTTGCTCTG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTGAAAAAAACAT	ref_5261_fdr	4	2	1	7	3	2	4	1	2	7
TACACTCCTGGTATGG	ref_5261_fdr	0	14	0	2	12	2	16	1	11	2
GGTGACTATTTCCGTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCAACGCTGTTGT	ref_5261_fdr	56	41	44	58	56	37	60	38	58	26
TATGAATCTACTTCCT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACATTGTTGGTGTCTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGGACGGTGATTCTGA	ref_5261_fdr	30	42	66	40	39	40	39	38	31	35
GACAGGTGCTCAGTCT	ref_5261_fdr	14	13	13	12	15	14	11	5	20	9
CTTTTGGCGCCTTATC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACAAATCTTGGTTGTC	ref_5261_fdr	19	22	35	22	17	15	21	17	13	15
TTTGTCGCCTCAGTAC	ref_5261_fdr	2	12	9	4	8	2	9	1	7	4
GGGTCTTCTCATACTT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TATCCTATTTCAGATT	ref_5261_fdr	25	25	22	19	28	21	24	21	19	22
GTTGCTTCTGCTTCTC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTTTCCCGTAGAT	ref_5261_fdr	21	26	29	34	32	19	31	27	28	23
CCTTAACGCCTGCTGG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CGCTAATTATCCTAAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTAACATGTTGAG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTCACCGCTATTG	ref_5261_fdr	25	33	25	28	22	19	27	27	25	19
TCGACTCGATTTCGCC	ref_5261_fdr	268	268	275	239	259	218	227	219	288	218
CTACATATGTTAGTTG	ref_5261_fdr	18	23	13	20	30	16	19	15	15	15
TATCGTTGTCCGTATG	ref_5261_fdr	25	25	20	14	25	20	33	19	21	15
TGCCTATCCTAGATTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTCATCAGACTCCTAC	ref_5261_fdr	0	0	0	0	0	0	2	0	3	1
ATCACCCGCATAAGTT	ref_5261_fdr	7	10	4	6	12	9	16	4	18	8
TCGCATTCCTATTCAC	ref_5261_fdr	50	43	72	42	65	40	51	36	89	45
GTGTCTGTATTAACGG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GAATCTTGCTCCTCGC	ref_5261_fdr	21	9	14	22	10	9	15	9	12	23
CCGCTGTCTAGGTCTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGGTCTTTATTGA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTCTCAGAGCTTT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GGGGGTTTTTCATTTC	ref_5261_fdr	30	29	36	25	32	24	29	44	27	20
TAGTTAGTAAAAGTCC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATGATTGTAACCGAGC	ref_5261_fdr	27	26	33	22	25	18	29	16	26	16
TTTGGTATAAAGTTAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTGGATCACCGGA	ref_5261_fdr	342	305	465	340	331	317	338	334	327	311
CTTATAAGATCTTGCC	ref_5261_fdr	44	35	64	37	36	40	25	52	47	45
GATGTATCATTACGCT	ref_5261_fdr	17	21	29	35	29	32	41	27	25	25
TGCGTGAACGTTAGTA	ref_5261_fdr	37	26	21	23	29	21	24	20	37	18
CAGTTATATGAATCTA	ref_5261_fdr	10	9	8	8	8	7	7	9	17	7
TTTGGTGAGTTTAGTG	ref_5261_fdr	45	55	50	55	47	52	56	47	61	58
CGTCTAGATATCTATA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTGTATTCGGTTT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTTCTGTAGACTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATATCCGAGGTTACAC	ref_5261_fdr	33	44	47	40	29	28	45	29	45	30
TGGGTTTAGTCTAATT	ref_5261_fdr	18	13	21	19	31	18	22	21	21	22
TAACGGTTAAGCAATC	ref_5261_fdr	56	65	85	74	70	69	53	85	70	64
GTTTACTAAGGACAGG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTCTTAAATTCCG	ref_5261_fdr	15	33	23	17	24	13	19	8	19	6
TGGCGAGTCAGTTCAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTATGGAACAAAT	ref_5261_fdr	43	60	63	39	61	34	65	43	62	42
TATCGGTTATGGAATG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATCAATTGCGATCTGT	ref_5261_fdr	16	23	30	25	17	21	18	16	26	16
CCCTCAAATACTTGAT	ref_5261_fdr	1	5	4	4	4	0	1	1	5	2
GGATATCGGCTCGCTG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTTCCCGCTGGC	ref_5261_fdr	34	35	42	31	22	35	26	24	36	31
AGGACTAATCCAGTCG	ref_5261_fdr	40	44	56	48	43	38	46	39	40	56
ATCGTTATTTTTATAG	ref_5261_fdr	1	1	5	6	2	2	2	3	8	3
CAGCCCCCTTCACGCC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTTGCACTGCGCC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CAGATTCCTAGTTCTT	ref_5261_fdr	20	34	18	29	27	16	21	22	33	16
ATCTCACATCAGGCTG	ref_5261_fdr	9	9	7	4	5	8	16	6	5	6
GCGACCGTCCGCACGA	ref_5261_fdr	18	19	26	31	19	17	15	24	28	17
TTGTGCACTCGCGGGC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCGAATTTGCTTA	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCACCGGCACAGAACC	ref_5261_fdr	9	25	10	13	13	9	17	13	29	12
ATTCAGGGACACTGCG	ref_5261_fdr	10	17	16	15	10	12	20	16	14	14
GGACCGGATAGTCTGT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGGCCAACAGGT	ref_5261_fdr	58	152	81	62	170	56	172	52	183	40
TGTCCGCCAAGTACAT	ref_5261_fdr	40	32	37	36	23	45	31	25	21	24
AAGGGAGAAGCTTATT	ref_5261_fdr	47	32	46	59	48	46	47	51	51	36
GAATCCAGGTAGCTTT	ref_5261_fdr	9	7	11	7	7	8	4	7	7	5
GTTAGGCCTGCCTAGG	ref_5261_fdr	9	6	11	6	8	4	10	6	6	4
CTATGATTCTTCTTTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTACCATGTTTACTCG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TAGCATTCGCCTTTGT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CATGAACAAGGTTACG	ref_5261_fdr	4	6	7	8	7	7	4	9	10	6
GTTCGCGCTGATCGCT	ref_5261_fdr	14	10	11	18	20	10	8	7	21	6
TTCTTCCGGTGGATTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGAGGCAACCAAC	ref_5261_fdr	87	77	89	72	81	72	90	73	93	56
TACCGGGTTGACCCGG	ref_5261_fdr	44	34	27	28	34	31	36	30	38	26
TGGATGAATACTTATG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGCCAGGCGGTCT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TAACATCTCCCAGATT	ref_5261_fdr	12	44	15	10	38	11	41	11	35	14
ATTTTGGGTACTAATA	ref_5261_fdr	46	42	40	50	36	40	30	29	42	38
AGTTGGACGGAATTCG	ref_5261_fdr	101	94	104	86	81	78	101	83	102	70
AAGTCTGTGTACTTCA	alt_5261_fdr	28	28	40	45	28	35	49	30	39	32
ATTGCCGTCTTTGCGT	ref_5261_fdr	3	5	5	1	8	12	11	10	7	2
GTCCATTGGCCGCGGC	ref_5261_fdr	33	20	23	15	21	13	21	18	38	22
TAGCGCGCGAACTCCC	ref_5261_fdr	33	37	45	48	53	40	54	37	46	47
AGTACCTCCGGATTGG	ref_5261_fdr	19	41	18	21	38	21	49	18	53	23
TAGTCCGACTGTTTTC	alt_5261_fdr	128	112	140	115	119	114	126	104	137	95
TCTAAGGCGGCCAAGA	ref_5261_fdr	31	28	38	28	35	24	35	22	27	28
CATCAAGTGTATGATG	ref_5261_fdr	3	0	3	1	1	2	0	2	1	1
AACTGTGTAGTTGCAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
AACTTCAGTTTTGCTC	ref_5261_fdr	53	60	72	63	65	53	55	44	65	64
CTAGCTTCGGTCTGTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
AACTCCCGCCAGGTAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGAAAATCTGAGTCTG	ref_5261_fdr	71	99	106	82	84	75	98	70	102	77
GGCCTTGCACGATTTA	ref_5261_fdr	40	43	36	43	45	43	51	46	52	33
CTCGGTTATTGTATAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCGTTCGATTGCT	ref_5261_fdr	11	13	6	15	14	12	10	17	13	18
ACTACTTGCACTTTTG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTACGTCATTTTGTGT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTTGAACTGTCC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTTTTGGCTTGAC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TAATAGTCTAAGCATA	ref_5261_fdr	41	42	53	52	41	42	49	27	40	29
GTTACTTGTTTAGTAG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCAAGTCCGTATA	ref_5261_fdr	15	16	14	16	10	21	13	10	12	14
GCCGTTTGCCGTTTCA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTATAGTGTCTAC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTATGTCCTTGCGTTT	ref_5261_fdr	42	23	36	41	40	43	33	29	36	36
TTTGGAGCAGGTGCAA	ref_5261_fdr	21	24	26	29	30	18	25	17	26	13
ATGCTATGTAACTGGT	alt_5261_fdr	32	35	41	31	52	40	50	38	43	26
ATAGACCATTGCTGGC	ref_5261_fdr	2	0	2	1	6	1	0	1	2	2
TTGACTGCACGTACCG	ref_5261_fdr	2	4	1	0	1	5	4	1	2	3
GGAGGCGATGTTTTAA	ref_5261_fdr	97	75	122	81	99	94	79	101	96	89
CCACTCTGTCTAATCA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTAGACTATGGA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTAATTCGTACCTCCT	ref_5261_fdr	7	5	14	13	5	9	7	8	13	9
CCCCCTTAGCACGTTG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CGAAAGGGGTTGAACA	ref_5261_fdr	9	12	8	1	7	6	7	10	7	12
TAGCTTACCCATCGTC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CATACGCATGCTGATA	ref_5261_fdr	10	15	16	24	11	18	16	11	19	16
TACTAGGATAGGCATG	ref_5261_fdr	14	8	17	18	13	19	7	13	5	12
CATTATGTGGGATTGA	ref_5261_fdr	32	29	41	48	52	49	54	39	45	36
TTCGTTCTTAAATTTT	ref_5261_fdr	19	24	18	13	15	17	22	20	21	19
CTAATCCTAGGCTTGA	ref_5261_fdr	12	16	12	17	7	11	13	16	19	5
CTTTCATCCCTCTCTC	ref_5261_fdr	42	26	39	42	43	32	35	31	35	23
GAAGACTAAATTGCGG	alt_5261_fdr	13	22	19	22	29	30	23	21	24	20
ATTCATACATAGTAAC	ref_5261_fdr	4	2	7	8	4	2	7	2	6	6
TGGTCCGTCTTAGCTG	ref_5261_fdr	29	17	32	42	39	36	24	25	37	27
TCCGGTGTTTTCATGC	ref_5261_fdr	2	7	2	7	11	9	5	2	16	8
CGAATCCTGGCAAACC	ref_5261_fdr	12	8	12	16	22	6	13	10	8	5
AGGGCGTAGTTCGGAC	ref_5261_fdr	5	0	7	6	5	10	5	10	7	6
GTCCCCAGTCCGTTTG	ref_5261_fdr	13	12	17	15	11	9	24	19	25	9
AGCGTTTCACTGCGAC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTCTAGATTAGCT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATTATGTCTATGAGGC	ref_5261_fdr	237	290	326	240	271	243	256	242	297	252
GGGACCGAGCCTTCAG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGTATAGGGCCCC	ref_5261_fdr	18	15	19	16	20	18	15	13	22	22
AGTCGGGCGGGCATTT	ref_5261_fdr	11	32	15	16	16	11	19	13	20	16
CACTCTATGTCATACC	ref_5261_fdr	4	14	7	7	6	2	7	9	6	2
GTAAATAGCGTGTGGC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GATCTGAATGCGGGAG	ref_5261_fdr	2	1	2	1	1	3	1	3	1	1
CGTACTTGGAGTCCGC	ref_5261_fdr	1	1	0	3	1	1	2	0	2	5
GTTTTTGAGTCCGCAG	ref_5261_fdr	66	79	81	82	95	76	84	80	90	72
CGTCAACTCGGGTCAC	ref_5261_fdr	1	11	4	1	6	6	10	1	9	7
AAATGCATGTAGTAAG	ref_5261_fdr	34	37	59	50	38	32	32	58	47	43
CCCCCCCTGTACATTT	ref_5261_fdr	3	2	3	4	3	1	5	1	2	1
ATAATCCTTTGGGGCT	ref_5261_fdr	1	2	4	4	3	6	3	1	7	2
CAATTACATTTGTGCT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGCGTTTTTATCT	ref_5261_fdr	5	1	2	0	1	3	1	2	3	3
TCACAAGATCGCCCGC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGGTCACCGGTGT	ref_5261_fdr	0	7	2	2	19	1	10	6	8	1
CCGATCGGGCAAAATT	ref_5261_fdr	8	7	8	5	12	8	14	6	8	1
ATGCATTTTATTTTGG	ref_5261_fdr	12	10	21	6	24	6	16	8	12	10
TGGGTGCATTGTGTAT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTTGAGATTTTAGCGG	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCCCTTGTTGCTATGC	ref_5261_fdr	9	33	15	16	21	11	21	12	20	11
TCTATGATGTGGTCTA	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGCACTCTAACCC	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCGTTTAAGAACT	ref_5261_fdr	14	20	27	13	16	13	10	13	20	5
AAATCATTTGGGTGGG	ref_5261_fdr	32	39	43	35	34	41	44	33	36	33
GGTTATATGGCATCGT	ref_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTTCAGTTACTGC	ref_5261_fdr	5	14	14	10	7	9	13	11	8	7
TTGCCTATCCAAGAGG	ref_5261_fdr	5	16	14	10	23	14	13	21	11	12
GTTATTACACCCACCG	ref_5261_fdr	2	6	5	4	5	5	8	9	6	10
TAGTCAGCCGGGGTAA	ref_5261_fdr	30	26	56	40	40	31	45	37	55	27
CATAGTATATTCTCCT	ref_5261_fdr	54	56	69	86	62	57	60	64	61	54
ATTATTTGTTTATAAC	ref_5261_fdr	67	47	71	52	40	42	51	71	62	49
GTACTTGCGATATGAA	ref_5261_fdr	39	59	56	41	48	45	47	43	66	43
ACATTGTAAGTTGAAC	ref_5261_fdr	15	25	26	19	17	12	20	15	20	17
CGCTTGTTTAGTCGCA	ref_5261_fdr	6	4	7	13	14	10	4	9	11	8
ATCCATCATAGTCGGG	ref_5261_fdr	6	2	10	6	2	5	5	4	4	7
CAGGAGCACGATCCGT	ref_5261_fdr	33	24	23	18	21	29	21	27	29	19
GTTCCAATTATAACTG	ref_5261_fdr	44	40	54	46	53	58	38	36	44	38
TACTACCGCTCCCATG	ref_5261_fdr	32	48	43	41	66	35	51	37	86	32
CTCCTGTTTACATGAG	ref_5261_fdr	3	19	7	5	5	4	2	4	9	11
GTCTGTTCTGGTTGTT	alt_5932_new	17	26	18	11	12	16	23	16	19	12
TCCTGGGGGACAAATC	alt_5932_new	35	49	40	37	55	39	58	43	59	44
AGACAAAATGCCATAG	alt_5932_new	0	0	0	0	0	0	0	0	0	0
TATTTATTTCTCTGGA	alt_5932_new	71	66	86	78	77	85	79	54	96	51
GTCCCGTCGGTTCATG	alt_5932_new	0	0	0	0	0	0	0	0	0	0
GTAAGAGCCTCCCACC	alt_5932_new	14	21	11	10	19	15	20	16	19	9
TTTTCCTTTCATCCAA	alt_5932_new	5	6	7	3	5	2	12	10	15	7
TTCGTCATCCATCGTG	alt_5932_new	3	4	6	8	8	6	4	4	4	8
TCGTGTCTCATTTGTC	alt_5932_new	2	3	0	4	7	9	5	3	7	2
CTCCAGCTTCCTCTTT	alt_5932_new	1	5	4	6	2	6	4	6	4	0
ATGGTCTAGCAAGACT	alt_5932_new	0	0	0	0	0	0	0	0	0	0
ATAATGATTCTCTCTT	alt_5932_new	47	32	54	33	36	40	50	30	46	39
GGTTCTATTAGTATTG	alt_5932_new	1	5	6	2	5	3	1	0	2	1
ATACCAAGGTTATCTG	alt_5932_new	63	67	63	51	55	51	72	35	68	41
CAGTGATATATTGCTG	alt_5932_new	0	0	0	0	0	0	0	0	0	0
ACGCCAGTGACCATTA	alt_5932_new	32	52	52	51	55	28	65	37	53	45
AATCATTGAGCAAGGA	alt_5932_new	7	0	3	2	1	4	3	3	5	2
ATAACGAGTATTAGAA	alt_5932_new	12	10	12	5	9	5	22	7	10	4
TAATTCAGCTGGTTGA	alt_5932_new	108	132	146	106	127	112	152	101	154	135
GTGGCTGGAGAGACGG	alt_5932_new	157	165	219	158	171	180	197	193	180	167
TATGCGTAGTGTAGAG	alt_5932_new	1	0	3	0	0	0	0	0	0	0
GATCCGGTATCACCGT	alt_5932_new	43	53	55	60	44	66	64	43	63	34
TTTTTGGAATGCACTA	alt_5932_new	0	0	0	0	0	0	0	0	0	0
CTTTGATAGACACTCC	alt_5932_new	3	22	7	1	13	2	13	1	23	1
ATTAAATGCGTCCTAT	alt_5932_new	17	18	10	16	15	6	19	14	13	8
CGTAAGAGTCGATTCT	alt_5932_new	78	65	58	58	92	52	98	54	100	58
AACTTTATATGGCTCT	alt_5932_new	1	5	2	4	3	3	11	7	1	4
CTGTTGTAAATCTATT	alt_5932_new	0	0	0	0	0	0	0	0	0	0
TTGGTCCTTTTTAGTC	alt_5932_new	17	28	39	22	30	28	35	13	28	20
AGGTAATCCGCACGGC	alt_5932_new	50	50	50	46	57	58	54	51	67	46
GGCGCTCTAGCCTAGC	alt_5932_new	25	23	37	10	27	27	26	40	32	21
GGATTATGTTTTCGTC	alt_5932_new	47	57	46	57	72	65	58	39	60	46
AATGTTCTACGGTTGC	alt_5932_new	13	12	12	7	18	5	19	5	10	9
CCTTGTGGCAAGTGAT	alt_5932_new	16	19	19	13	38	22	29	14	25	12
AGTGCCGCCGGAGTTC	alt_5932_new	9	10	13	8	7	15	15	10	12	10
CGAGTCACACTCGAGT	alt_5932_new	17	19	9	10	11	5	11	9	10	13
AGAACCTACCAGCGTG	alt_5932_new	81	133	121	74	107	90	124	95	132	102
TTTCGGTCGTTGCATC	alt_5932_new	0	0	0	0	0	0	0	0	0	0
GTGCCCTAACTGAAAA	alt_5932_new	9	16	20	6	16	11	17	6	17	11
TTGAGCCGCGTGCCTC	alt_5932_new	15	7	8	11	6	9	11	7	4	9
CTTGGTTCGCCTGGCG	alt_5932_new	0	0	0	0	0	0	0	0	0	0
CTTTACCACAGAACTC	alt_5932_new	0	0	0	0	0	0	0	0	0	0
GTTGCCGGCCGCTAGT	alt_5932_new	0	0	0	0	0	0	0	0	0	0
GCGGAAAGACAAATAT	alt_5932_new	21	36	54	46	48	37	47	39	37	46
AGAAATCTTCAGTCTG	alt_5932_new	17	18	35	12	34	25	40	25	28	22
AAATGGTAACCTCCAG	alt_5932_new	97	88	111	109	102	100	104	93	97	95
ACGGGATCGACAAATT	alt_5932_new	15	18	28	18	28	17	12	18	23	19
CAGTGACCTTAGTTTG	alt_5932_new	25	31	17	10	20	16	17	13	21	26
GTTTGGGACTGGATTG	alt_5932_new	6	10	8	8	9	5	10	9	7	5
CCAGTTATGTCTGTGA	alt_5932_new	19	46	28	37	48	34	39	27	37	33
GTTTACGCTGCTGGGT	alt_5932_new	9	20	14	15	11	9	13	7	14	14
GTCTCTAAGCCAAAGT	alt_5932_new	0	0	0	0	0	0	0	0	0	0
CCTTTGTTACGAAGGG	alt_5932_new	10	6	2	7	1	1	7	3	7	6
TTCGCCGCCATTTGTC	alt_5932_new	46	73	90	63	47	55	68	68	71	55
ACCATCCGCAGTCCCC	alt_5932_new	29	50	45	41	39	33	41	37	49	37
TCATTAGCGATGGTTT	alt_5932_new	40	45	61	38	27	28	48	47	36	45
GATATATAATGCATTA	alt_5932_new	0	0	0	0	0	0	0	0	0	0
CATATGTATAATAGCC	alt_5932_new	0	0	0	0	0	0	0	0	0	0
ACCAGCAGGGGCGTGC	alt_5932_new	31	53	36	26	53	25	54	38	58	32
AGGCCTGTCCGTTTTT	alt_5932_new	41	31	26	42	35	29	42	50	29	45
CGCCGCCTCTTGTTCG	alt_5932_new	28	33	26	29	26	27	32	33	29	36
CTTGAGACCTTGTATA	alt_5932_new	0	0	0	0	0	0	0	0	0	0
ACAATTTTACCGTATC	alt_5932_new	8	9	13	14	14	10	9	4	3	2
ATAACTCCTCTACGTA	alt_5932_new	0	0	0	0	0	0	0	0	0	0
TGATCTAGTGGTGCGG	alt_5932_new	1	2	2	6	4	4	4	1	6	2
CGCGGACCCACCTCAA	alt_5932_new	2	3	1	0	3	1	2	0	1	1
GCTTATTTCCTCGAGT	alt_5932_new	2	3	2	2	4	4	2	1	4	2
ATCGAGTTAGGTAATA	alt_5932_new	0	0	0	0	0	0	0	0	0	0
TGAACTCCTGTTGGAG	ref_5932_new	59	55	85	65	75	70	75	46	78	67
ATAGCCGGGTAAGTGT	alt_1707_missing	4	6	4	8	8	4	8	1	9	2
CTTGGGTACATCGATT	alt_1707_missing	65	100	92	81	109	60	89	62	106	66
TCCACGCCTCGCATGA	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
TAACTGTTATGAATAA	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
ATCTGCAGTAATCCGC	alt_1707_missing	39	38	41	36	45	24	44	29	50	45
CTTATCATCAAAAATC	alt_1707_missing	5	14	9	2	12	11	15	15	14	3
GGGTGTTTAACTGTGC	alt_1707_missing	41	76	48	45	78	56	84	47	78	48
TTGTAATAATTCCTCA	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
GTACCGCACGGCAGCT	alt_1707_missing	22	33	23	23	29	22	32	20	42	14
TTTCCGGGTTTCGTGC	alt_1707_missing	55	95	68	49	95	53	87	62	91	68
GCCACCTCAGCAATGA	alt_1707_missing	5	7	3	2	11	6	9	5	8	5
ATAGTTGTCAGGCAAC	alt_1707_missing	18	18	14	14	24	14	18	18	32	10
TTCGGCCGCGACTATG	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
CGTCCCTGCAGCGCGC	alt_1707_missing	6	5	6	7	15	7	10	8	10	14
CGCAACTCGTCGCTAT	alt_1707_missing	18	23	20	8	22	23	27	33	38	18
AGCCTTCTCCGCCCCA	alt_1707_missing	20	27	11	16	22	23	35	19	37	15
CGCGTTTAACCGAACG	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
AGACATGAAGCGGGGT	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
GCTATCGTCTCTGTCC	alt_1707_missing	16	20	7	13	35	17	27	17	33	12
GGGTGTCTATTGGTTC	alt_1707_missing	21	26	23	11	33	22	41	21	33	23
AAAAGATCACTCAAAA	alt_1707_missing	51	82	92	58	68	67	89	49	91	43
CGTTGCGCCATTGGTC	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
AGTACCGGCCGAAGGT	alt_1707_missing	4	29	8	2	23	5	33	5	32	5
TTGTTACGTAGGCATG	alt_1707_missing	163	277	212	193	254	183	283	156	297	169
TCGGGGTCAAGACTCG	alt_1707_missing	54	104	66	64	85	65	110	42	117	43
TGCGGTCCTATAACGC	alt_1707_missing	33	39	37	35	42	21	50	44	38	26
GACACCGGCTTCGCTA	alt_1707_missing	3	23	10	1	16	4	28	4	19	4
GCAGTCTTTCACGATG	alt_1707_missing	17	17	22	21	15	8	18	15	14	17
CTTGATGTAGACGCCG	alt_1707_missing	8	12	18	16	12	16	16	15	16	9
CCTCATCTCCGCGCGG	alt_1707_missing	23	38	25	30	48	17	45	24	52	31
TAGGGTTGGTTCAACT	alt_1707_missing	58	75	69	63	83	70	87	53	94	46
TTTCGTGTATGGACAG	alt_1707_missing	31	64	37	38	44	39	50	35	59	32
TTAGCTACATTCCTCA	alt_1707_missing	58	70	34	36	52	32	53	43	56	36
GCGTAATCCCCCTTCT	alt_1707_missing	0	0	0	0	0	0	0	0	0	0
TTCTTGAGACTAATTT	alt_1707_missing	10	13	11	14	17	8	17	7	13	10
TTTAACCGACGTCAAT	alt_1707_missing	199	342	281	234	352	203	376	189	419	251
AGAGGTGGGTACTTAT	alt_1707_missing	0	6	5	5	6	5	3	4	2	5
GGTAATGAGGGGCGGC	alt_1707_missing	9	9	9	6	9	7	10	12	9	3
TGAAGCAGTAACTAGG	alt_1707_missing	12	13	7	8	13	8	15	13	20	11
AGCGGGTTCCTCTTGT	ref_3356_upstream	24	17	41	33	17	42	9	34	19	30
GCTGTTACCAGATGGT	ref_3356_upstream	41	32	83	74	46	65	50	51	29	56
TAATCGCTCTGAATGA	ref_3356_upstream	11	6	16	7	9	18	7	18	7	18
GTACATCATACTAGAA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TGACTGGGTGTTACTG	ref_3356_upstream	54	26	58	55	29	38	27	51	34	47
AGTGGCGCCTGCGCTG	ref_3356_upstream	105	57	115	99	55	81	72	87	78	87
TTTCGAACCCCGCGAC	ref_3356_upstream	37	19	30	29	23	20	15	17	27	30
TCATATGATCGCATTG	ref_3356_upstream	77	46	132	82	41	68	33	70	47	78
TTCCCCGCCAGCTACG	ref_3356_upstream	19	32	38	27	38	49	33	40	31	37
CTTGTTTAAATTTTTC	ref_3356_upstream	28	27	35	25	6	32	20	30	21	19
TGACGCGACAGGATTG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GACGGAGATTGTCGTT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AATGCTTTCGAATGGA	ref_3356_upstream	97	52	97	85	45	90	69	79	59	84
ATTTCGTACAGGTTCT	ref_3356_upstream	34	18	42	27	14	26	11	17	16	31
CCGTGGTGGTCCGTGT	ref_3356_upstream	6	6	6	8	6	1	6	5	6	3
GTGATAGAGTACTAAG	ref_3356_upstream	11	8	27	12	12	20	11	13	9	13
TTTGGTCTCATCCGCT	ref_3356_upstream	32	22	52	26	10	40	12	33	17	30
TCTCGTCTGATGACCC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTTCATTCGAATAGCA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTCCACATTTGTGATT	alt_3356_upstream	635	425	727	619	401	595	381	554	388	576
GACAGGAAGGAATTAA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGCCATTTAGGTT	ref_3356_upstream	17	9	19	17	8	24	9	26	3	12
ATAGTCATTCTTCAGA	ref_3356_upstream	68	27	70	89	33	54	44	45	30	53
GGGAGTGGCCATCTTT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTATTAATCCGGTTGC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TACGGACCCGTTGGTT	ref_3356_upstream	34	23	42	42	21	28	25	34	15	45
TCGTGGTCCGCTGGGT	ref_3356_upstream	51	25	71	57	25	60	35	54	28	46
TTAACCCGATTCGGTG	ref_3356_upstream	47	26	43	55	13	36	17	40	23	30
CTGACGTATTGGGTTA	ref_3356_upstream	187	107	243	205	141	210	123	200	112	206
GTATGGTCAATTTACA	ref_3356_upstream	29	14	28	19	13	22	17	14	15	22
ACCCGTGTAACATTTG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CCACCCTCACGTCACT	ref_3356_upstream	12	11	20	17	5	17	11	12	9	14
GCTACGTGGCGATAAT	alt_3356_upstream	281	199	353	274	224	265	237	240	207	264
AGATGACTTTTGTACC	ref_3356_upstream	55	24	42	45	20	48	20	41	23	30
TCGTCCATATGTACAT	alt_3356_upstream	199	125	267	211	181	207	157	183	176	215
TCCGGACTGTGCCTCT	ref_3356_upstream	12	13	27	30	16	19	18	17	21	25
ATCAATGTTTAGCTTA	ref_3356_upstream	33	17	30	34	15	28	18	28	30	34
CTATTTAAGGCCACTG	ref_3356_upstream	127	76	159	168	55	132	69	118	89	126
ATGACACACAAGTTAA	ref_3356_upstream	120	56	158	101	61	87	69	100	68	101
CTTCGGGAGCAATTGC	ref_3356_upstream	116	70	134	92	67	110	77	97	78	92
TACAGCGCCCCACTGT	ref_3356_upstream	11	5	5	12	1	5	3	6	6	6
AAGTCCTCATTTTATT	ref_3356_upstream	63	37	75	81	40	52	33	49	25	52
AGACGGTACGTCGAGT	ref_3356_upstream	32	24	33	32	23	21	30	18	19	28
TGTCCTGTCACATATA	ref_3356_upstream	121	49	155	124	64	107	61	103	69	78
AGTTCACTTCGATCGT	ref_3356_upstream	23	13	24	28	6	27	16	7	10	19
AGGCGATGTTGTTCTG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCGATCGTACGCT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AACGCTGCTGAAAAGT	ref_3356_upstream	51	13	61	75	27	46	16	56	14	35
GGTTAATCGGTAGCCA	ref_3356_upstream	27	20	36	43	13	25	17	30	13	26
CGTCTTAGCAACCGCA	ref_3356_upstream	53	27	59	53	27	49	26	53	32	45
GCCAGAGCCCTTTGAG	ref_3356_upstream	148	72	143	128	46	94	64	110	53	122
TTTTGTTGTCCGACAT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGTCGGAGCGCGA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTCATTTTTGAAG	ref_3356_upstream	70	48	76	81	45	72	42	95	42	79
CCCTCTTCCGCCTTTG	ref_3356_upstream	2	3	3	5	5	4	3	10	2	7
ATGCTTACATGCTCCC	alt_3356_upstream	365	174	359	295	156	320	211	218	248	304
AGAGGGTGCATGCGAG	ref_3356_upstream	139	69	192	137	66	173	96	119	76	144
GAGCGTAGGACAATAT	ref_3356_upstream	52	36	63	51	23	46	32	60	26	44
GATCAGTTTAAAGCAG	ref_3356_upstream	67	45	121	80	40	99	47	73	65	70
CGGCCATCTCCTGTGC	ref_3356_upstream	18	50	23	21	46	15	52	18	55	12
TCACATGTGTGGACTT	ref_3356_upstream	107	79	140	92	70	92	66	104	62	84
TCATTCTCCCCATATC	ref_3356_upstream	49	88	60	62	112	61	102	64	121	48
TATATGCCACACATCC	ref_3356_upstream	67	26	99	63	25	49	38	43	22	35
GGTGTCGGGGTTTGTC	ref_3356_upstream	4	5	8	3	4	4	2	0	3	6
TGCTTAACCCGCCTCT	ref_3356_upstream	42	31	64	59	28	43	32	64	30	51
TTGACTTAGGTGAGCG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTGCGGTCCCCAG	ref_3356_upstream	18	12	21	20	11	14	10	18	9	29
ACGCTGGCCCTAGAGG	ref_3356_upstream	28	7	32	23	14	23	20	21	10	17
GACCTGGTTAAGTTCT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTGGTCTGAGGT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTCTACATGGTCTTGT	ref_3356_upstream	1	0	2	2	1	0	1	4	0	3
AGTTTTCACCGACTCT	ref_3356_upstream	53	27	74	60	38	66	39	48	32	53
GACAGCCGACTTTTTT	ref_3356_upstream	59	58	56	43	37	50	54	46	49	42
GGTAGTTCCCTGCTCC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCCATAAGTAGGCCTT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTTGACGCCGCAA	ref_3356_upstream	196	105	228	212	84	183	98	142	98	132
GGTGATAATCTTTCCG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGATTGAACCCCA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GGCGACCGCCAAGCCG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCCTGATTTGGGT	ref_3356_upstream	67	53	119	97	54	131	54	84	50	85
CTCCTTTAATTGAATT	ref_3356_upstream	20	12	32	22	20	33	10	28	20	21
AGCGATAGTTCTGCTT	ref_3356_upstream	21	5	14	15	10	24	7	20	8	9
GCAATTTTTCTACTCA	ref_3356_upstream	102	28	106	104	48	98	43	97	32	87
TGACAATTGGTATAGG	ref_3356_upstream	28	20	49	24	23	34	16	21	13	18
ACCGTACGGCTGGCGC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AACCAGTGCGCGGAGA	ref_3356_upstream	50	20	45	48	32	44	28	51	25	44
GATGCTCTCTTCAGGG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGTATTATGCAAA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAAGGTTGGAGGC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCGCTTAATGTCC	ref_3356_upstream	44	21	47	46	21	31	24	48	19	34
GTTAAAGGGAACGTAG	ref_3356_upstream	50	35	52	52	15	62	18	43	24	60
TGTGCATATACATTTG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCCCATGCTTATCGGA	ref_3356_upstream	482	226	626	483	237	439	261	470	259	471
CTTCGCGGGTTTTGTA	ref_3356_upstream	66	44	63	60	21	62	34	56	29	55
CTCGCACAAACGGCGG	ref_3356_upstream	173	78	196	171	79	143	88	137	119	151
TCAGAGGTCATCTCAG	ref_3356_upstream	29	9	34	19	4	20	18	22	10	29
TTATGTTGACATTCGA	ref_3356_upstream	112	51	181	145	53	125	47	128	64	106
TCCTTAATGGAGCACA	ref_3356_upstream	23	6	19	8	3	16	3	18	7	13
AGGACTTGTGTTAATG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTTTCCGCATAT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGTCGGTAGTAGG	ref_3356_upstream	10	12	23	18	8	8	14	20	13	17
CGGTACAAGCTCGTTT	ref_3356_upstream	33	10	33	23	14	22	14	17	15	38
GTTCTTAGACCTTTAC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCGTCTGCCACGG	ref_3356_upstream	24	16	38	21	17	21	17	18	12	37
CGGATCGGTTACTACG	ref_3356_upstream	65	51	69	66	38	76	41	59	49	79
AGTAAGATAGTTAAAG	ref_3356_upstream	82	44	103	81	43	72	63	66	57	60
GTAGCTCTTGAGATTT	ref_3356_upstream	118	56	150	121	56	122	54	119	57	110
TATATTTGTCCTGCTC	ref_3356_upstream	38	19	67	43	21	36	13	53	26	32
CTGCAATATTTCATAT	ref_3356_upstream	48	31	60	41	30	55	20	52	41	30
TACTGGTGCAACTACA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCACAACTGGTCC	ref_3356_upstream	144	85	157	153	69	158	54	146	61	127
TCAGGAACCGATCACG	ref_3356_upstream	28	13	40	29	14	29	17	29	16	21
CGGTGCAGTTTTTTTG	ref_3356_upstream	7	11	14	15	6	9	4	13	3	8
TGGGTCATAACCTGGA	ref_3356_upstream	67	31	96	55	33	65	29	58	48	71
TTTCGAAATTAATTTT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AACGCGACGTTTTAGC	ref_3356_upstream	28	17	32	22	13	32	8	19	10	23
TGACATCTATCAGAGT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCGCTAATTCCGT	ref_3356_upstream	14	6	17	18	6	13	7	10	14	5
TCACTGTTCATTGCCC	ref_3356_upstream	156	54	191	195	93	136	107	163	98	150
ACCCGATTGAACCCCA	ref_3356_upstream	239	99	308	276	138	273	136	263	130	250
TCACCGTCTCTTCAAG	ref_3356_upstream	33	14	33	26	15	22	22	32	17	34
GATAAACGTCGGGCCC	ref_3356_upstream	95	47	107	98	33	94	55	72	55	89
CTAGTAGGCGTTATTA	ref_3356_upstream	39	23	53	41	14	49	22	33	22	46
TGCTTGGTACGTCTAA	ref_3356_upstream	21	11	24	17	7	19	13	13	13	15
CTTGCCTTCGTAAGGG	ref_3356_upstream	119	73	159	114	71	94	61	102	68	114
GTCCCTAGATATATCC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TGGATATTTTGTTGCC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGGGGGCAGTACA	ref_3356_upstream	44	22	58	44	17	28	25	27	25	44
TCCGCTTATAATATCG	ref_3356_upstream	7	3	3	9	4	11	4	7	6	9
TTGATCGTTGGCTTCG	ref_3356_upstream	33	15	23	22	15	26	15	23	14	16
GACAATGAGTGGGTGA	ref_3356_upstream	58	37	71	82	41	68	27	76	36	68
ACTTCTCCGTTATGTC	ref_3356_upstream	3	0	4	3	2	6	2	4	1	4
ACCCCTAACGCTATTC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCTATATTTTTCA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTGGACTCCTAG	ref_3356_upstream	13	10	28	17	11	17	13	26	16	19
TAAAGCATAAGCGCAT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGATAGTGTGAAT	ref_3356_upstream	185	89	222	179	95	190	100	178	99	165
TTCAAACCAGACACGC	ref_3356_upstream	98	40	123	109	46	100	40	83	48	89
TAATCAATTGGCTAAG	ref_3356_upstream	25	9	40	26	11	19	12	27	14	24
TACTGTGCTCGCTCAA	ref_3356_upstream	20	12	24	21	13	15	8	17	14	16
CGAGTCAGGCGGTAAT	ref_3356_upstream	16	6	13	12	1	17	3	8	4	21
ACACGCTCTCGCCTTT	ref_3356_upstream	191	74	199	177	67	152	91	167	66	161
TCTTTCGTCCGATTAT	ref_3356_upstream	22	12	34	17	6	28	8	13	7	16
AACTCCCACCATTCCG	ref_3356_upstream	11	4	13	13	6	10	9	12	11	11
AGGAGTTCGCCGTCCG	ref_3356_upstream	20	5	21	13	17	13	7	19	10	14
GCTCAGCTGCTCCTCC	ref_3356_upstream	105	79	174	124	80	89	72	117	106	107
CAAGGCCGCTACTAAT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTCTATCGGTGCTGGA	ref_3356_upstream	138	77	153	138	84	105	89	131	84	119
AGAACAGTGTAGTCCT	ref_3356_upstream	122	68	156	121	53	106	68	126	82	115
GTGTTCCAACGTGCGA	ref_3356_upstream	7	4	13	11	7	11	11	10	9	13
TTGTGCGTGTCACATT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACTGTGATCCCT	ref_3356_upstream	32	9	36	17	10	21	14	18	5	15
ACATGCAAAGAATGAT	ref_3356_upstream	86	31	63	84	38	69	58	49	30	67
CTCCTACGGACCTCTA	ref_3356_upstream	97	74	156	98	62	112	71	118	50	125
TCTCATGCGCGGAACC	ref_3356_upstream	4	2	12	8	1	8	7	11	3	6
TCCTGTAACTGGTGCA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATACAAAGCAGGAGGC	ref_3356_upstream	151	64	187	154	64	152	61	140	67	142
TCGTATAAATTTGTAT	ref_3356_upstream	146	80	176	151	89	127	98	146	89	132
GGTATTCGGATATTGG	ref_3356_upstream	44	24	62	44	13	63	25	48	27	34
GAAGGCTATGAGGAGC	ref_3356_upstream	55	28	75	47	27	55	31	58	25	53
ACGACTTTATCTTAGG	ref_3356_upstream	44	26	74	77	21	61	34	57	27	43
GAGCTCCTACATCCTG	ref_3356_upstream	91	42	138	89	52	97	52	98	71	81
TCGCTCGGAATGTGAA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCTATTGTTTTTTCGC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTATTCATCCGTTGTT	ref_3356_upstream	46	25	36	30	23	40	23	36	23	43
GTGCCCAAGCTGTTTA	ref_3356_upstream	34	17	42	31	23	23	9	34	10	26
CCTTCGAGGCGCTAAG	alt_3356_upstream	139	89	193	139	94	147	91	125	82	143
TGGCCCTACCATTCTT	ref_3356_upstream	98	66	141	109	57	101	49	107	61	105
TCTAACTAGGGCAACA	ref_3356_upstream	249	109	271	205	124	223	132	202	130	193
GCGAGTGTAGGTGGCC	ref_3356_upstream	38	17	47	35	18	27	19	32	19	29
GATGTGTACACAGCGT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGGCAAGGCATCG	ref_3356_upstream	8	7	17	19	9	13	14	16	1	5
CAGTTATTATCATAGC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTATTTTTCAGT	ref_3356_upstream	53	29	67	51	16	57	27	38	21	48
AACCTTGCGTTTATCC	ref_3356_upstream	24	13	26	19	6	26	11	25	12	18
TCCGTTTGAATTTGAA	ref_3356_upstream	160	83	207	151	99	173	90	174	82	134
GGACTTTTTTCAATAA	ref_3356_upstream	110	41	124	101	56	88	48	94	47	101
TGTGGGCTTCACCTCA	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATACTCGAGTTTACTG	ref_3356_upstream	6	2	8	3	2	5	0	0	2	4
ATTCGGCATCACTAGA	ref_3356_upstream	248	119	316	244	127	246	151	228	163	204
CCGGTATTCGAGCCCG	ref_3356_upstream	59	20	44	47	18	29	34	47	17	36
GGATTTAAGACCGCGT	ref_3356_upstream	0	1	3	3	1	1	0	0	0	3
AAGTATTCTCTCGGAT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCGACTTCTTGTCGGG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GGATCTTCTACCACCC	ref_3356_upstream	22	5	29	22	9	17	7	22	4	15
TGTTCTATCCTGCGCC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCACTTAGTTCTG	ref_3356_upstream	48	19	58	47	15	60	30	44	20	55
GGTTGCGGACACCTCT	ref_3356_upstream	26	8	28	33	10	11	13	14	14	21
CTTTGAGCCGCTCTTG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTTATAAGTACCG	ref_3356_upstream	108	70	97	103	55	95	57	99	74	96
ACCCCTATTATTTTTT	ref_3356_upstream	11	6	10	12	5	6	3	17	9	14
TGTCCGGCGTCCAATA	ref_3356_upstream	117	52	133	137	75	131	62	104	69	99
CTTGTCTATCGAGCGT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAAAGTTAGTTGT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
CGACCTTTTTTCATTT	ref_3356_upstream	36	17	39	34	19	28	20	15	28	12
CTCTGGGCTCACTTCG	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCATTAGGTGAAATAT	ref_3356_upstream	391	143	442	376	181	406	183	390	198	340
TAGCATACCATAGTCC	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCTTTTAGGTTCC	ref_3356_upstream	13	4	31	17	11	21	9	24	7	22
CACACCTTAGTCGGAT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTATCGATAGAAT	ref_3356_upstream	184	87	212	178	105	188	100	160	94	197
TCCAGTGTTAGAAGCT	ref_3356_upstream	39	15	35	31	23	25	11	41	15	31
GTCGTGTAACTAGCGG	ref_3356_upstream	21	14	30	47	18	28	16	17	18	30
TGGCCGTTGTAAGGGT	ref_3356_upstream	17	9	17	11	5	13	10	6	13	14
TATTTACGCACAAAAG	ref_3356_upstream	43	17	44	39	10	29	13	25	11	36
TATGCACGACATACAT	ref_3356_upstream	0	0	0	0	0	0	0	0	0	0
TATAGTTGTTCTTTGG	ref_3356_upstream	2	1	3	1	0	3	0	2	2	1
GATTACATTATGTGGC	ref_1218_upstream	2	3	2	3	2	5	7	3	8	9
GAGGTGCTCCTACGGA	ref_1218_upstream	50	74	67	53	50	47	72	60	82	45
CTGTATTTGCAAGATC	ref_1218_upstream	6	15	5	6	6	11	8	8	8	8
TAAGATCGGGTAAGTC	ref_1218_upstream	43	65	68	49	65	47	63	40	50	33
GCTTTCGCCCAAGTGC	ref_1218_upstream	5	10	10	7	10	3	4	5	9	5
CCTCATGTTCACCAAT	ref_1218_upstream	17	23	27	7	32	13	24	10	38	12
AGGGGTTCCCTCGGAT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGGGCAATAGAGT	ref_1218_upstream	26	52	54	30	53	30	45	22	50	34
TACTCTAATATTCAAC	ref_1218_upstream	89	154	120	96	143	69	161	82	161	104
GGATAATCTTGTGATC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCCATTCGGGAAG	ref_1218_upstream	50	49	47	39	66	43	61	34	62	43
CTGCCCACCTTGCAGT	ref_1218_upstream	10	14	8	2	8	3	8	3	8	7
TATCTATTTCTTTCTC	ref_1218_upstream	13	1	11	9	15	13	9	13	12	5
GTACTCTAAACTACGT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CATCTAGATACACGTG	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCATTGCGGTTTT	ref_1218_upstream	53	81	54	45	64	41	78	40	84	22
CTTTTTCTAATCATTG	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
GTCGCTATGTAGTTCT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CGTAATTCATGTCAAG	ref_1218_upstream	48	57	44	41	65	25	48	30	65	23
TAACCTGACCTACAGT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TTATCACCTTCCTACT	ref_1218_upstream	38	58	40	29	50	29	46	34	55	27
ATGAGTTAATAGTCTG	ref_1218_upstream	61	86	62	48	81	50	92	50	98	47
GTTCTTAGGTGCGACA	ref_1218_upstream	20	45	18	33	50	26	34	32	42	20
GAGCATATGTCCTGAG	ref_1218_upstream	4	8	5	6	11	8	5	4	8	7
ATTCGTAGTGCAGATT	ref_1218_upstream	16	15	15	21	22	7	22	12	30	9
TGGCTTTGCGCTTATG	ref_1218_upstream	28	75	57	39	81	50	80	39	71	35
TTCGTATCTGTCTGTA	ref_1218_upstream	18	28	27	13	35	13	24	23	31	29
GAGAATATAGAATGCC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
GTATTCTCTTATTCCC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTTACAACAATAT	ref_1218_upstream	11	19	15	18	8	8	11	8	21	5
CAGAATAATAGGCCGC	ref_1218_upstream	32	51	55	35	51	30	65	38	37	35
GACGCCTGTGTTCTTC	ref_1218_upstream	36	34	28	25	38	30	46	16	46	21
AATGGACTTGCCGACT	ref_1218_upstream	7	11	14	14	12	9	14	4	13	11
ACATTTTTTATTGTAT	ref_1218_upstream	4	8	9	6	7	4	8	3	5	2
GGCCACCTGCAAGATC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGTGCCAGCATAG	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
GTACTATATTTCCACG	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
AACAGGAAAGGAAACC	ref_1218_upstream	47	57	54	41	74	49	84	40	39	26
GGTGTCCAGCAACCCG	ref_1218_upstream	2	3	5	0	5	4	5	2	0	2
GGTATATCAAGTGGGT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CAGAAATTCTGGAGCT	ref_1218_upstream	7	10	7	9	11	2	7	9	18	8
TCGGATTAGGGTTTTT	ref_1218_upstream	24	29	29	19	19	18	34	24	31	21
ATTTTGTATTCTTGAT	ref_1218_upstream	22	33	23	22	45	18	34	15	42	9
GTTACTGTACCTAATC	ref_1218_upstream	9	9	10	13	13	15	15	11	11	14
ATCTTCACTTTTGCAG	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGTTTATCGCTTC	ref_1218_upstream	109	102	95	77	117	92	131	57	126	63
AGGCTTAAACCGTAAA	ref_1218_upstream	54	74	86	62	73	31	87	44	99	47
TCTTTTATAGAGAGAT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CAATTATGGTTTCCCT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTTTAGTCAGGTG	ref_1218_upstream	22	34	16	19	33	22	29	22	34	9
GGTTCACATCGCCCTG	ref_1218_upstream	9	14	15	11	15	7	12	11	16	10
GCGTTAATCCTCACGG	ref_1218_upstream	61	114	82	58	109	69	105	76	86	61
CGCTCAATCGAGCGAC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCGAAAACGATGA	ref_1218_upstream	26	36	37	28	39	27	39	37	30	26
GGGTTTGATCTCGTAT	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCACCCCAGGCTG	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCAGATTCGTAGC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTTACTGCTCTCA	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TCTGGCCCCCGGGCAA	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TAGAAGCGTTGCTGTC	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
ACACGCTGTGGTCTGT	ref_1218_upstream	0	2	2	2	5	3	1	2	2	1
CACTTCAGAACCGATG	ref_1218_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTCATTGCACTAT	ref_1218_upstream	15	45	41	25	33	19	44	32	37	27
CGTCTGAGCTTTATAT	ref_1218_upstream	39	71	66	54	75	51	70	50	68	36
TAGGGGCCTATACACA	ref_1218_upstream	39	52	56	30	42	29	57	29	50	32
GGACTGGGAAGGGGTA	ref_1218_upstream	169	198	194	145	215	134	215	133	252	114
ATATTACAGGTAGCTC	ref_1218_upstream	25	56	25	12	49	24	37	24	51	20
GAAATGATCTTCTATG	ref_1218_upstream	2	7	2	5	6	3	4	3	2	1
GATTATGCTGTCACAG	ref_1218_upstream	29	31	25	37	36	28	42	22	31	27
ATTACTGCTATTTGTG	alt_3022_RC	36	42	51	48	67	56	51	41	47	52
CTGCGCAACGTTCGAT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TTACCGCTGTATTAGA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TAGCCATTGGGTGGTC	alt_3022_RC	3	8	13	5	7	9	9	3	7	9
GGTTGGAGTTAAGGCT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
ACGGCTCGTATAGTCG	alt_3022_RC	48	59	83	64	82	67	82	65	87	57
TGTACATGTTTAGGTG	alt_3022_RC	17	19	16	24	16	18	25	18	16	12
CCCTTTAGTCCTTCTA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AGGTCAAAATATGTCC	alt_3022_RC	19	12	13	19	7	13	14	7	20	11
TTTGCCAGTGACGCCG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TCAATCTTATTGTTTC	alt_3022_RC	86	120	113	91	120	101	104	72	105	84
GGTTGCCCCCTTAATG	alt_3022_RC	8	9	5	11	10	12	12	5	7	5
ATATAGGACTGTCTCT	alt_3022_RC	9	19	6	12	9	10	12	8	4	11
TACCCTCATCATACTT	alt_3022_RC	83	135	111	101	115	79	114	84	121	83
GGGGTACATCTTTTGA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TCATTTGGTTCTTGTT	alt_3022_RC	19	34	28	24	32	21	25	21	29	20
ATCGCATGTAATGGAG	alt_3022_RC	153	115	169	168	130	145	125	113	149	122
GATAAAGCGGATCTCG	alt_3022_RC	25	35	36	35	30	28	28	22	28	24
CTATTCTACCCTGTTT	alt_3022_RC	3	4	3	7	3	1	2	4	8	6
CCACCACTCGTTGAAG	alt_3022_RC	190	287	250	264	267	168	297	194	293	171
GCATCACCGAGCTGCG	alt_3022_RC	17	19	31	25	28	18	19	17	18	16
CCCTCCGGCCGCTCTT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CCTATACCGCGTGGTG	alt_3022_RC	40	39	57	47	48	29	67	42	51	47
CTCAAGACGATAGCTC	alt_3022_RC	33	25	43	40	45	44	45	22	45	31
AGCAAGTGCTATCCGG	alt_3022_RC	14	13	20	16	20	15	16	20	25	12
CGAACCATCAAGCTGC	alt_3022_RC	11	14	11	8	14	11	13	18	18	7
TAGTTAGATGAATCGG	alt_3022_RC	27	24	28	25	24	11	27	14	24	29
CGGTTCGTTGGACGTG	alt_3022_RC	89	97	95	72	87	52	88	78	104	92
ATGATCAATCCAATAG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CCCAACGATCGTCTCT	alt_3022_RC	10	13	17	9	13	11	14	8	9	10
ATTTTAGTCCTGGACA	alt_3022_RC	25	19	31	32	23	29	33	24	27	25
GACCGTGACATACAAT	alt_3022_RC	208	255	338	249	250	256	240	235	242	204
TCGGAGGGAGAAAGGC	alt_3022_RC	24	31	34	36	32	34	27	30	34	29
GTCCACAATTTTTAGG	alt_3022_RC	18	19	30	23	22	20	34	31	33	20
CGCTTTTTCGTGCCAA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CCTTACAGTCGCACAT	alt_3022_RC	41	65	50	49	64	57	79	47	57	46
CATCATTACGAAAGAA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CCGATGAGGTTTTTTT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AAATTTGGAGATTACT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
ACTTGTCGTATCTACC	alt_3022_RC	7	10	10	8	12	15	8	11	11	6
AGAGTTATGTCCGCGA	alt_3022_RC	54	53	65	49	53	44	54	42	32	53
TCTGTTGAGGGGGCAT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
GGCTATTTGTTACCGT	alt_3022_RC	16	10	12	4	9	6	11	4	16	12
GGCAGGTATTACTGCT	alt_3022_RC	13	13	14	11	16	6	19	11	11	6
TTCTCCACAGGCTATA	alt_3022_RC	1	1	1	0	0	0	2	3	0	1
GTACAAAATTAAGGAT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
ACTTTTACAATCAGTT	alt_3022_RC	34	45	56	32	36	34	45	38	30	36
CTGTGCTATCTTCTTG	alt_3022_RC	13	12	16	11	14	14	16	12	18	11
CGCCTATTGGCGCTCC	alt_3022_RC	22	13	33	35	17	15	20	20	19	14
CTAATTAATTGGATTC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TTTTACGGAGGCCCGG	alt_3022_RC	18	16	25	15	14	26	27	16	17	12
TTTTGAATCGGGATCC	alt_3022_RC	2	5	0	5	5	5	2	3	0	3
GAGGGGCCATTATAGC	alt_3022_RC	15	10	19	16	14	20	12	11	17	14
TGTCGGTCGGCGTTGC	alt_3022_RC	27	22	21	27	22	27	36	20	43	29
CCGCCCGTCTGTACAG	alt_3022_RC	6	3	4	6	7	4	7	4	15	1
TCAAGGCTAGTTAGTG	alt_3022_RC	17	25	22	12	24	19	25	20	33	9
CTCTTAATTGAAGGTT	alt_3022_RC	37	47	44	38	53	40	50	40	45	29
TGGAGGACCATTCTTT	alt_3022_RC	12	13	12	8	23	10	12	11	19	13
CAGGTATACCAGCCTC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
GCCTTTAGGCTCTTAC	alt_3022_RC	9	13	14	17	22	12	24	28	25	9
CGTCCACTGGACGTAC	alt_3022_RC	10	7	10	5	7	6	12	11	11	6
CTGTCAAGGTCAGAGT	alt_3022_RC	3	6	1	3	5	0	6	0	11	1
TTCCAGCTGCTGCACA	alt_3022_RC	8	5	11	6	4	3	7	8	13	7
TAAGTTATCCGTCGGT	alt_3022_RC	10	9	7	6	7	9	6	6	13	6
GACTATGTCTCTTTGT	alt_3022_RC	5	10	10	6	9	12	11	7	4	6
TTGAAGGCAGGAGTCT	alt_3022_RC	47	61	60	47	45	38	48	41	63	57
GCAATCCCATCTGGTA	alt_3022_RC	32	48	38	38	60	38	49	44	39	36
GTAGCTTTCCATGTAT	alt_3022_RC	36	45	44	34	39	37	34	36	32	37
TAGGAATACAGTGCGG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AGATAGTCTTCATGAT	alt_3022_RC	64	33	76	56	58	72	53	49	59	43
CAGGGGAGCCCGTTCA	alt_3022_RC	17	18	31	24	23	32	15	21	27	9
GGACTAGCTTGTTACA	alt_3022_RC	9	8	14	8	15	12	11	5	18	9
ATATATTGGCTATTAC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AGCTAAGACCGTACTT	alt_3022_RC	112	133	179	110	108	101	147	120	140	123
TGTATTTGCTGCCTCT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TTTCCAAGTAGTATGC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTCTTCGCCCTG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTGCGTAGTAAT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TTTGCTACTTGTGCCA	alt_3022_RC	15	15	16	11	19	12	9	12	16	11
TCGGATATCGGACAGA	alt_3022_RC	15	22	20	21	18	4	18	21	21	13
CAGCGCTTCAATCTAC	alt_3022_RC	75	72	93	82	90	48	84	69	87	60
GGACCGGTATTCAGCC	alt_3022_RC	7	6	10	10	13	4	10	3	11	3
TAAGCTGTCTCATTGA	alt_3022_RC	2	4	11	7	6	9	8	8	7	3
AAGTACTTTCATTGCA	alt_3022_RC	43	39	68	39	48	42	58	47	55	39
TGCGGATAATTTATAT	alt_3022_RC	106	121	127	141	118	130	121	110	136	96
ATCTACGGAACCTCAT	alt_3022_RC	16	19	24	27	17	16	18	13	21	11
GTCTGTCGGCTTCTAA	alt_3022_RC	35	35	63	44	35	42	41	40	32	34
GGTTAATCTCCTTTCT	alt_3022_RC	36	20	45	35	19	28	33	33	38	32
AGCACTCTCTTCTACT	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
GACAGCTTCAGAACAT	alt_3022_RC	73	77	89	93	107	81	119	81	113	67
ATTCGGGTGTTCGTTC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CCATTAGTCTTTCGGA	alt_3022_RC	14	30	15	18	32	10	27	16	30	10
CTGTACGTTAGGAGGT	alt_3022_RC	12	10	19	20	11	15	20	20	15	18
GCCATTCCGTGGTTGT	alt_3022_RC	32	41	43	30	41	31	35	38	38	30
ACCCGTCATATACGTT	alt_3022_RC	30	40	37	37	37	27	41	21	38	31
CTTGCTTCTCGCTGAC	alt_3022_RC	17	18	40	26	16	20	21	30	25	20
CAAATAACTGCCTCTG	alt_3022_RC	71	71	68	54	67	55	80	56	73	46
CTTTCGGCGTCTGCTT	alt_3022_RC	14	14	20	17	12	11	8	13	9	7
AGGCAGCTACTGGCCG	alt_3022_RC	15	2	6	10	8	8	11	12	7	4
AGCTATTATTCACTTT	alt_3022_RC	23	24	35	25	25	21	23	19	30	13
TTGAACTGTTCGGTAA	alt_3022_RC	3	10	7	7	8	6	10	3	5	3
CTGGCCTAACACTGGG	alt_3022_RC	48	57	68	64	81	55	53	48	106	40
GTACCTACCGTTTTCA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TTCAGTGCTACCGGTC	alt_3022_RC	4	5	7	7	11	9	12	3	11	1
CTTTTGATCGCGCTCA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AACGTGTTGCAACCTT	alt_3022_RC	61	87	94	88	65	72	78	84	110	54
CCCGTTCTGTCATGTT	alt_3022_RC	20	22	28	25	31	18	31	27	34	24
GGTATGTCTTAAAACT	alt_3022_RC	15	15	14	7	14	8	17	9	17	16
GGCAGGTCGGTTTGCA	alt_3022_RC	5	7	7	8	10	6	6	9	7	0
ATATCTGACCTACCTG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TAGATGGTAGGAAAGT	alt_3022_RC	18	26	28	19	33	18	20	22	27	11
TTTTGAATTGTTCATC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
ATGAATGTTGCAACAA	alt_3022_RC	24	32	26	18	30	24	23	7	23	21
GTATAAATGGTTTTAA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AGCAACCAATGGTCCC	alt_3022_RC	117	115	130	94	126	90	111	111	96	96
GTGTTTCGCGCAGTGG	alt_3022_RC	17	23	28	16	15	21	21	23	21	19
CCTACAATAAGGTTCC	alt_3022_RC	3	2	6	5	2	6	2	4	4	2
TGCTCAGCGTCGCGTA	alt_3022_RC	49	41	70	52	45	37	56	36	68	34
TGATTCAGTGGGGATC	alt_3022_RC	14	12	17	9	4	5	10	8	13	4
AATAGCCATGTGTAGA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
GCGACATCTGCGTCTT	alt_3022_RC	14	17	14	11	12	11	8	13	11	5
TCACAGCATCGCCCCA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
CATTCTGCTCACTCCA	alt_3022_RC	28	32	27	27	42	32	28	27	35	22
CGATTGATATTGGTAA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TAGCTCACCCTCGTCC	alt_3022_RC	116	145	135	127	128	129	145	133	133	126
GTTGTTAGAAGCTGTA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
GCATGCTACGTCCAGC	alt_3022_RC	53	61	83	85	57	64	63	46	80	63
AAAGCGGCTCGAGAGG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
ATTTAGATACCTTGTT	alt_3022_RC	215	241	273	214	214	209	254	158	243	187
CATTTCGTTACGTGCA	alt_3022_RC	125	198	164	150	156	124	188	169	171	139
ACTGGTTCGTTGTACC	alt_3022_RC	89	93	53	59	88	45	77	53	95	45
TAGGACGCTGGCACGG	alt_3022_RC	29	20	28	17	21	20	19	13	26	11
AGCTCGCTTGTCTTGT	alt_3022_RC	10	11	15	13	9	12	17	15	18	22
GTTTGTTCGCTAAATG	alt_3022_RC	38	26	26	29	38	24	36	30	22	26
ATACTAATTCCTACTG	alt_3022_RC	312	331	431	353	286	349	311	354	357	320
ATCCTGAGGCACATGA	alt_3022_RC	31	29	49	48	36	27	52	34	33	30
AAGTTTATACGGGGAC	alt_3022_RC	22	29	23	23	30	18	34	18	25	20
TAGCTTACGCATTTTT	alt_3022_RC	18	30	19	27	18	17	30	21	24	28
CCACCACTCGTAGAAG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AAAGCGGCTTGAGAGG	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
ATGACTTTTGCTATCC	alt_3022_RC	24	26	48	27	36	22	22	27	36	27
AGCGCGCCGCATTCGT	alt_3022_RC	24	23	33	30	25	33	22	22	24	25
AGTTTTTTTCGCCTTC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TTGTCATCTGTGTAAA	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
AAGATATTAAATTGCC	alt_3022_RC	0	0	0	0	0	0	0	0	0	0
TGTCTGAAGCGTTGAT	alt_3022_RC	3	3	7	3	5	7	2	4	0	3
CTCACAGATGACCAGT	alt_3022_RC	8	11	6	10	13	6	10	11	19	11
CCATATATCTTTGGGT	alt_3022_RC	53	58	49	41	49	60	50	75	57	56
CTCACACGGGTTTTCC	alt_3022_RC	53	49	62	49	40	53	36	40	37	36
TAACCAAGTTTGCTCT	alt_3022_RC	46	30	54	42	38	42	34	34	46	33
ACATGCAGGCCAGTAC	alt_666_reverse	6	7	9	1	6	2	6	3	12	2
GCTAACCGACAGGCAT	alt_666_reverse	40	53	30	26	55	38	42	33	42	26
GTATGGCACAAACACT	alt_666_reverse	13	22	8	10	17	11	23	14	16	17
CTCGTAAGACACTATT	alt_666_reverse	15	28	13	9	28	15	24	13	29	11
CTTACTATCAACTTCT	alt_666_reverse	49	69	51	42	77	60	65	35	71	36
CCATTCTTAGAGCTAG	alt_666_reverse	6	12	8	6	14	12	16	4	10	12
GATTCAACATGATATG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGAACACCTTATA	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGCAGGTGGGTGA	alt_666_reverse	1	1	0	1	1	0	4	1	2	1
TATGATAAGTCAGGTA	alt_666_reverse	2	2	2	0	1	0	1	0	0	1
GGTCTCCTTCGACAGG	alt_666_reverse	72	97	78	90	125	56	141	61	102	59
GTATCTGCGAAACCCT	alt_666_reverse	2	4	3	3	4	1	5	4	1	2
TAGATTACGATAGTCT	alt_666_reverse	0	0	1	2	3	3	3	4	1	1
ACGCCTGGCACGCTTG	alt_666_reverse	24	39	32	18	56	25	39	21	40	23
TCATATCCTTCATAGT	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GTACCTTCCTGAAGAG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGGTCTATAGTTC	alt_666_reverse	27	26	25	17	43	18	38	16	46	11
CGGCTACTGAGCCGGT	alt_666_reverse	23	23	23	22	45	15	28	16	37	23
CCCTTAAATGGGTTTA	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GATCCCCCTGGGGTCA	alt_666_reverse	36	70	42	33	62	43	67	38	91	40
GCCTGACTTATAACGG	alt_666_reverse	49	67	57	57	103	47	83	27	103	34
ATCTATGGCAAATGAG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TATTCCTGTTCGAGGT	alt_666_reverse	13	17	14	11	26	13	18	13	22	7
GGAGAAATCGATTAGT	alt_666_reverse	21	22	17	13	23	12	19	12	25	16
GAATACCCCGCTTAGG	alt_666_reverse	36	74	44	30	57	23	63	29	69	26
ATGGGCGTGTTCCAGG	alt_666_reverse	5	13	9	9	13	10	21	6	19	10
CGGGGATGAATTTCGC	alt_666_reverse	25	34	18	17	22	20	24	27	21	10
TTACTATGTACCGCAT	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTACTACTCTCTT	alt_666_reverse	12	44	42	38	35	25	43	30	47	44
CATCTTTGGTTCAATC	alt_666_reverse	11	23	6	16	11	9	19	9	22	10
GAGCACGTACGCCCGC	alt_666_reverse	11	23	9	15	24	16	26	8	25	16
CTTCTTCCGTGATCAT	alt_666_reverse	39	52	57	28	54	29	70	25	51	27
GACAGATCCGCGGTCT	alt_666_reverse	10	14	10	10	11	11	8	6	19	6
AACAGTCCTCGCCTAT	alt_666_reverse	2	10	3	3	10	3	8	6	11	5
CGTGCCAAATCGCGGC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCACGAGGAGAGC	alt_666_reverse	31	70	33	50	56	25	75	30	57	35
AAGTACCTCACGCTAG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CGCTAAAGATGTTTTG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GCTGTAAATCTAGGTA	alt_666_reverse	2	5	12	4	7	8	11	4	9	8
CCTTAGCGAGATTGCT	alt_666_reverse	14	34	15	17	27	20	27	13	31	10
GGATCGCTTTTGTTAT	alt_666_reverse	15	33	16	14	16	14	29	11	26	14
GTTCCTGGTGGTTAGC	alt_666_reverse	7	8	8	7	15	4	13	5	17	6
ACCTATTTCATACTTA	alt_666_reverse	51	85	52	37	88	38	87	38	100	31
AAGAATAGTTTGCTAC	alt_666_reverse	21	27	14	11	17	11	31	8	21	9
TCTAAGCTTTAATGCA	alt_666_reverse	64	115	71	59	89	47	113	48	102	39
ATATGTGCATCGCCAC	alt_666_reverse	0	1	0	0	1	1	1	2	3	0
AGTGTTGGCAAAGTAG	alt_666_reverse	7	8	4	5	13	7	6	10	9	4
ACAAGAAACGTGCTCT	alt_666_reverse	0	0	0	0	0	0	0	0	1	0
GACTATTGAGTTTGGG	alt_666_reverse	11	35	12	27	33	12	22	13	26	8
AAAGGGACTCTTCTAG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CTACTAATATGCCATA	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCCGACGCAGAAC	alt_666_reverse	6	11	3	7	10	5	11	3	7	3
CACTATCTTCATGCAT	alt_666_reverse	21	18	17	10	16	8	18	4	26	10
TTGCTCCGCTCGGCGG	alt_666_reverse	21	59	27	25	48	19	57	31	41	24
CCCAGTCTGACAGCCG	alt_666_reverse	8	14	5	5	11	2	12	6	14	9
GGATTGATCTTAGTTA	alt_666_reverse	28	50	44	33	60	23	54	19	59	38
GGCCTTGTGGGTCGTA	alt_666_reverse	6	17	12	7	10	12	12	9	19	8
CCAGGTTCGTCTTCTG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCGCGTCCATATG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GAAACGCCCACAACTT	alt_666_reverse	54	82	57	41	88	56	84	33	85	49
GCTTGAGCCCATTTGG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GTTAGTTTGTTTAGCA	alt_666_reverse	24	37	19	17	25	22	34	19	44	17
TTTTAGTAGCTGGCCT	alt_666_reverse	4	3	5	5	19	3	6	4	3	5
TTTTCTGCATACTTCA	alt_666_reverse	4	10	1	5	6	3	7	2	7	3
CCTCTAAGATTTCTGA	alt_666_reverse	6	14	7	7	7	1	9	5	6	8
TCATATAGGTTGGGCT	alt_666_reverse	7	20	8	12	23	7	14	12	25	8
GCACACTGGACGGATT	alt_666_reverse	3	19	17	17	35	11	24	9	25	9
CTGTGTTACCATTTCT	alt_666_reverse	26	45	34	33	55	27	46	19	71	30
TGTTCCTGGGAAGTGT	alt_666_reverse	28	61	21	14	44	29	43	30	44	22
GTTCCTGTTTTTTGTC	alt_666_reverse	2	8	7	11	10	8	7	3	11	4
CTTGGAAGTCCAGTGG	alt_666_reverse	7	14	8	5	22	9	14	9	21	13
CGAGGATACCGCGGAA	alt_666_reverse	35	61	29	29	35	19	51	27	71	30
TATCAAATAGATCGTT	alt_666_reverse	41	54	64	56	69	45	84	53	82	44
TGCGGGTTTAAGTCCA	alt_666_reverse	9	11	8	9	7	9	15	5	12	2
CTTGGTTGAGGAGGCG	alt_666_reverse	19	40	24	28	40	25	46	21	41	19
GCCAGATTTGGCTGAG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGAAATTTGGACG	alt_666_reverse	10	16	7	13	22	11	17	9	22	6
GGTTGCAGTCAAGCGT	alt_666_reverse	10	34	21	9	15	27	32	6	25	17
GTACTTTAACCGAACG	alt_666_reverse	6	19	14	9	24	12	19	2	15	6
CTGTCCACAATGCTAA	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGCCCACGGCAAA	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTGTATATTGTTG	alt_666_reverse	32	47	34	39	48	32	51	30	57	24
CTCTGTAATTTGCCTC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTAACTTAATAAT	alt_666_reverse	18	31	31	9	21	14	27	19	37	10
GAGCTTCGGCCTTATA	alt_666_reverse	10	16	13	8	14	17	21	10	23	10
GTGGGAGGTCCCGGAT	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TGAATGTTGTCCAGCG	alt_666_reverse	27	44	31	28	47	35	59	30	51	21
CTAATGTTGGACGGGT	alt_666_reverse	9	25	8	22	32	10	25	11	31	10
CCTGCTGTTTCTCACG	alt_666_reverse	4	1	9	10	5	6	7	4	9	5
TCGATATCCCAGGGGA	alt_666_reverse	11	15	14	13	21	11	15	12	23	23
AGCAGACTAATCGATC	alt_666_reverse	31	62	35	29	52	38	41	20	56	23
AGATGTCTGCATTGTG	alt_666_reverse	2	4	6	6	6	5	6	1	7	7
CGGCGCACCGGAGATT	alt_666_reverse	2	0	2	1	2	2	1	1	3	4
GCGTATGGTCACTGAT	alt_666_reverse	75	159	83	90	149	96	152	64	166	93
AGGGTCCGTTTATGCG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
AACCCGCATATGTTGG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCTTACATCAGTG	alt_666_reverse	13	19	25	29	14	10	19	10	29	11
CCAGTGTCGCTTACTT	alt_666_reverse	5	9	6	3	6	5	19	6	10	1
CGTGGTTTGCCTAGTT	alt_666_reverse	6	8	10	8	6	3	8	3	8	4
CAATGGCGTCTGCGCG	alt_666_reverse	19	26	14	25	48	23	30	34	26	22
TTCACCGTTGCTAGTC	alt_666_reverse	35	84	35	26	95	31	93	35	71	30
GGACCTTTTCCTGTCA	alt_666_reverse	9	23	7	6	24	9	20	10	26	2
CATCTCTAAGGGTTTT	alt_666_reverse	8	15	8	17	20	6	11	4	23	2
CTGCTCCGTACTTGTG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTATCCTTATCT	alt_666_reverse	1	3	3	6	3	3	6	5	12	5
ATCAATGCAACTAATA	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CGCATGTCCAAGGGCA	alt_666_reverse	55	130	76	60	118	64	142	55	122	53
GCATTTTACATCAGAT	alt_666_reverse	4	2	12	1	7	4	8	4	12	4
TTGTCGTACGAATCTT	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTCTTTTGTAAG	alt_666_reverse	4	9	5	4	6	3	10	6	12	3
AGTAGTTGCTGCCAAT	alt_666_reverse	0	2	4	1	5	0	1	0	3	1
TTTTGTTTCCACAGTG	ref_666_reverse	57	94	70	51	79	47	96	37	101	44
AAAGTAGGGCATAACC	alt_666_reverse	26	63	22	20	50	18	56	28	56	18
CTACGTGCCGAGGTGC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTAGATAAGTTG	alt_666_reverse	12	14	7	9	24	6	20	5	20	7
GACATCGGTTATCTGA	alt_666_reverse	23	37	20	31	39	21	42	23	44	15
GAACGTTGAACTTTAG	alt_666_reverse	11	13	12	8	17	9	20	4	14	9
CACAAATCTACGGAGC	alt_666_reverse	18	41	19	34	31	18	36	16	50	25
GTGTCAGCTGACATTC	alt_666_reverse	14	35	29	26	50	28	52	25	43	22
CTTTCGTCGGTTTCTT	alt_666_reverse	2	5	3	0	6	5	5	2	6	1
TAACGAAAATCATACG	alt_666_reverse	5	15	15	12	9	4	7	6	15	7
TCTTAGGATGTGGTTC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GATGAAGCACGGAGAC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTATCTACCATT	alt_666_reverse	5	3	5	2	5	0	5	1	4	6
GTGATGTCTTGATCTA	alt_666_reverse	58	38	74	43	42	24	41	45	29	34
TTTACACGGTCAACTC	alt_666_reverse	12	53	25	21	45	12	36	8	52	13
TTCTGTTACATTAGCA	alt_666_reverse	53	96	60	46	100	38	104	61	96	46
ATCAAATCTTAACCGG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTTACATTCCTC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CGAACCCTCGCGTCCG	alt_666_reverse	39	43	32	25	47	21	39	17	43	24
CATGCCAGAGGTATTC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCCGGTGGAATAC	alt_666_reverse	49	64	53	35	84	39	77	26	68	38
ATACTCTGGTGCCCAT	alt_666_reverse	18	32	13	16	45	24	30	26	35	15
ATTATACGGCCCAGCA	alt_666_reverse	1	3	2	2	4	3	2	7	2	0
TTTCTATTAGATAGGA	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGAAACGTGCTCT	ref_666_reverse	255	396	310	286	418	217	461	229	484	261
CAGCTAGTACATTATA	alt_666_reverse	37	87	45	34	93	38	101	49	66	42
TCTGTACAATTGCGAA	alt_666_reverse	6	9	2	2	8	2	7	2	9	2
TTGTAATTTTCCCGAC	alt_666_reverse	38	61	39	40	37	40	73	28	66	30
TAAGAACTACCTATCC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGGCCTCGTTAG	alt_666_reverse	22	48	34	31	56	29	53	15	62	17
TTGCCCGTTCCGGTCC	alt_666_reverse	22	52	36	31	65	27	65	10	64	27
GTTCTATTCCGACTCT	alt_666_reverse	17	33	16	18	36	11	50	20	33	9
GTCGGTCGCGACACCT	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGAGGGCTTTACC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CGCACCGGCCCAGAGA	alt_666_reverse	30	56	50	36	70	57	70	34	65	32
ACTCCATGTCCGGGGA	alt_666_reverse	24	34	23	22	36	26	43	26	50	32
AATCTCTACATGTTTT	alt_666_reverse	30	54	36	34	58	27	50	25	39	22
TTGGTCCGTTAGCAGT	alt_666_reverse	2	5	5	1	4	2	7	1	4	4
CATCAATTGTCGTTGA	alt_666_reverse	5	8	8	4	10	9	16	2	7	9
TGCTATAGATGAATCC	alt_666_reverse	9	8	15	11	12	8	13	7	9	8
TCCAGGCCGAGACCGA	alt_666_reverse	15	34	10	9	20	6	34	11	23	7
AGTATGTTTACTCATG	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CGTACCGTGCCTAACC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
GTACAGGAAAATAACA	alt_666_reverse	4	3	5	5	11	5	10	6	4	3
GGGCCCAACACGCGGT	alt_666_reverse	11	17	12	4	19	7	21	5	18	8
GCGTGTCTGGCATCAA	alt_666_reverse	24	34	22	39	45	16	41	9	48	19
AACGACATGATCACGC	alt_666_reverse	6	19	12	6	16	9	19	11	15	6
TTTTGGCAGCTTATCC	alt_666_reverse	5	8	3	4	13	5	13	4	5	3
CAGGTGTCAATAACTA	alt_666_reverse	7	13	8	5	11	5	17	4	11	3
CGATTGTGCTCTTTCG	alt_666_reverse	31	65	40	29	63	38	54	38	82	37
GGCAATCCGGAAACCT	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CATGCTATTTCGGGTT	alt_666_reverse	0	2	2	5	3	2	5	2	10	4
TTAATGTTCTTCAAGT	alt_666_reverse	0	1	1	2	2	1	1	0	2	0
TGTCAGATCGACAAGG	alt_666_reverse	6	12	14	7	12	5	29	10	21	7
ATCATTTAGCGATGTT	alt_666_reverse	34	52	51	38	62	30	69	39	80	27
AGTTTGAGGCTCCACA	alt_666_reverse	7	7	5	6	11	5	6	4	14	5
CGATGGCGAGTCCTTC	alt_666_reverse	3	1	3	2	4	0	4	1	2	0
ATGGCGGAAAAGCAAC	alt_666_reverse	28	48	44	42	57	28	57	31	75	23
TGACAGAGTGGTCCTC	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
ATTACTGCTGATGCGG	alt_666_reverse	42	48	66	47	94	32	59	44	85	34
CTTACTTTCAACTTCT	alt_666_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGTGAATTGTATT	alt_666_reverse	39	52	32	33	73	31	55	33	58	31
TCGTTCAAACTCACCC	alt_666_reverse	11	47	12	10	13	4	16	7	21	10
TTCTTACGTCACAAAT	alt_666_reverse	3	9	14	11	11	10	17	11	18	9
CCTTCCGCCCTGTCCA	alt_2029_upstream	150	51	186	185	42	158	32	136	46	135
TTTCCGATTGCCAAAT	alt_2029_upstream	113	22	125	87	23	103	25	89	22	75
CCTAAATTGGTATACC	alt_2029_upstream	116	34	167	135	50	117	50	153	40	127
TATCGGCATCTGTCTA	ref_2029_upstream	1353	315	1692	1403	288	1322	325	1357	315	1261
TATCATACTACCAAGG	alt_2029_upstream	239	57	267	237	53	220	63	243	62	175
AAATTATAGGTATTGC	alt_2029_upstream	98	17	112	90	23	79	9	74	22	88
CTTAGTCGGTTCCCAC	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCGCCGAGAGTCG	alt_2029_upstream	517	128	679	606	145	542	149	489	162	504
AATCCTGCATGTGTTC	alt_2029_upstream	88	19	105	85	15	96	27	82	16	81
ATTGCAGCCAATTTAC	alt_2029_upstream	224	50	295	237	58	237	71	205	73	173
ATACGTCTATTTTATT	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGCTGCAACTAGG	alt_2029_upstream	801	185	1064	876	229	732	199	749	223	675
ACCGCGCACGTCGGCC	alt_2029_upstream	373	72	423	366	80	332	83	332	93	315
CATATGTTATTTACGC	ref_2029_upstream	73	14	93	65	15	64	14	77	20	55
TATGCGATGTAATATA	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
TAGGGAATCGGGTCTA	alt_2029_upstream	96	18	86	85	9	55	22	72	16	66
TTAAAGTATATTTTCT	alt_2029_upstream	75	9	87	74	16	60	14	95	12	76
GTCGTCTACGCACTAG	alt_2029_upstream	185	51	251	199	45	167	47	147	47	174
TTACTATCCGAGTGAT	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCATTAATTCTAG	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGGAGCTAGCGG	alt_2029_upstream	118	21	130	121	25	89	18	121	35	103
TGGATTAGGTTACTCT	alt_2029_upstream	23	5	39	27	8	33	8	32	12	35
TAGCTATTTGTATCGC	alt_2029_upstream	317	84	381	328	105	297	86	321	100	264
TCATTCTGTTGCACAC	alt_2029_upstream	22	9	49	38	9	26	8	30	8	19
GGTGCAGGCTTTCGAC	alt_2029_upstream	33	10	76	52	13	50	12	37	11	40
GAGTTTATTACCGTGT	alt_2029_upstream	19	6	22	23	5	19	1	17	10	18
ATGTGCTGAGTTTTGG	alt_2029_upstream	183	49	200	163	39	165	51	146	45	128
CAGCTCCAGTTACCTC	alt_2029_upstream	23	15	35	43	9	37	4	34	10	29
TCTTTCTGTAAGGACG	ref_2029_upstream	300	58	301	293	60	232	71	270	75	253
AACGAGAAACGTGTCA	alt_2029_upstream	131	24	171	143	35	137	42	129	38	125
GAAACGACAACAACAC	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
GGCTACCCTTGCAGTA	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTAGCTTCAGAGT	alt_2029_upstream	273	46	254	220	39	223	50	183	64	202
TATATTTGCTTATTTA	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTCACTTATTTG	alt_2029_upstream	147	24	150	123	38	143	49	167	36	132
TTGTTACCACCCTCAC	alt_2029_upstream	791	188	986	844	176	725	195	748	213	722
TCACATCTCCTGATAC	alt_2029_upstream	36	9	45	26	9	24	10	24	11	30
TGAAGATCTAAGACCT	alt_2029_upstream	186	22	234	191	44	159	37	149	32	163
ATGTTCAGCACACTAA	alt_2029_upstream	113	19	95	116	26	104	27	96	30	68
CAGGATAGGCCGGGAC	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCAGGGGCTCTCT	alt_2029_upstream	193	54	232	219	34	204	58	159	51	163
GAATGCTACGTATTCT	alt_2029_upstream	45	8	52	53	12	42	9	41	12	58
TAGAACACCAAGCAAG	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGATCCGTTAGGC	alt_2029_upstream	18	3	16	14	1	23	0	11	6	8
CATCTTATAGTTTCGT	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGACTTGAACTTC	alt_2029_upstream	107	33	159	165	49	109	29	100	53	131
CTCGTTTTTTTTCTCC	alt_2029_upstream	14	5	18	23	9	20	6	29	4	24
CCTGTCGATTTGTTCT	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
AGCAGATTACCGAGGA	alt_2029_upstream	305	57	403	345	56	321	75	330	74	298
GACAGTGCTTGCTCAT	alt_2029_upstream	123	29	139	114	44	107	35	127	29	113
CTCTAGCACATTAAAC	alt_2029_upstream	524	152	591	608	154	418	157	442	168	410
ATTCCATTAGATACTC	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAACCACTTTCGT	alt_2029_upstream	619	138	678	632	124	578	138	596	140	511
GTTTAGACAAGGATGT	alt_2029_upstream	153	44	215	179	41	177	49	160	47	135
GAGGCTTTCTAGAACA	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGGCCGGACACGG	alt_2029_upstream	416	104	577	510	106	478	108	406	118	392
TGCCCTATGACTGAGA	alt_2029_upstream	714	179	918	845	199	752	187	714	217	622
AGCTATTTATTAGTCA	alt_2029_upstream	100	32	121	105	28	83	28	99	22	88
CGCTAGTTCTCTTTTG	alt_2029_upstream	285	49	342	299	76	249	72	241	61	246
GCTCCCGTAGTATCGC	alt_2029_upstream	303	72	325	274	60	253	71	280	79	199
CAATATCCATGTCTAC	alt_2029_upstream	72	19	91	79	9	63	16	66	27	67
CTATCTTCAGGTTTCT	alt_2029_upstream	94	30	145	116	27	102	30	68	24	92
CCGGGTGGGTAGTCCT	alt_2029_upstream	35	12	46	47	8	39	8	37	8	21
CGGTGGACTTGACACG	alt_2029_upstream	26	8	37	41	2	27	5	26	5	23
CTACTTCTACCGTCTG	alt_2029_upstream	398	115	472	442	115	387	89	417	109	389
ATGCCACCATACCTTT	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGCTCTTTCGCAA	ref_2029_upstream	27	8	53	27	8	27	13	35	2	20
CTTTAGCGCGCTGTCG	alt_2029_upstream	289	71	285	286	76	221	58	234	60	242
GGGAGTATCGTGCCAT	alt_2029_upstream	7	3	9	13	5	7	4	7	2	8
TTCAGTCGTGCCATTA	alt_2029_upstream	153	40	200	190	45	154	42	165	38	137
GGCGTTAGCAATCATT	alt_2029_upstream	238	40	309	215	46	218	69	223	50	215
CTGTACTCATCTACGG	alt_2029_upstream	183	53	217	187	56	144	54	172	47	163
TGTCAACCTCTGTGGC	ref_2029_upstream	326	98	411	355	108	332	134	298	144	329
TCGTAGGTCTTTTCTA	alt_2029_upstream	178	49	239	179	40	155	43	181	42	150
GTCTTTCCCCGGGCTA	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAGACACGTAAAG	alt_2029_upstream	135	27	138	162	37	131	39	129	34	112
AGGGTTAGCCCCGGGT	alt_2029_upstream	201	27	237	230	35	180	57	209	53	179
GTGGATGTATATCTAG	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
CTAGCTAATTCGGTTT	alt_2029_upstream	81	18	124	121	28	104	25	93	33	116
ATGGATAGTGCTTTTA	alt_2029_upstream	60	20	71	63	12	48	15	57	18	47
ATGAGCCTTGATTCGC	alt_2029_upstream	439	83	544	492	133	426	114	496	104	378
TCTTGGCCAAATCGGC	alt_2029_upstream	121	23	185	157	43	105	44	157	24	103
CAGCTAAGTACAATTA	alt_2029_upstream	13	1	31	22	3	18	7	18	5	16
ATTTCGATGCCTTTTT	alt_2029_upstream	28	5	40	39	12	29	4	40	6	38
TTCTCGATTGCCTAGG	alt_2029_upstream	23	6	42	45	11	32	4	32	10	26
ACCGTTTCTTTCTTGT	alt_2029_upstream	88	19	119	85	17	70	13	103	21	97
GGTGCAACGTCAGTTG	alt_2029_upstream	81	19	96	74	20	75	32	80	13	59
TATCAAGCTTGTCTAC	alt_2029_upstream	182	47	210	213	34	155	54	200	38	141
TCCCCAGCAGGTTCTT	ref_2029_upstream	241	110	306	256	96	216	108	232	102	226
GTTTGCAACTAAACTC	alt_2029_upstream	0	0	0	0	0	0	0	0	0	0
TCGTAACGATAGTACA	alt_2029_upstream	211	60	227	204	44	191	47	213	42	176
GGGCTGTGGCGTCATT	alt_5475_missing	30	39	26	16	49	31	41	24	39	21
GGGCCGTGTTTCTCGC	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTTAGGACCTGT	alt_5475_missing	1	0	2	0	1	4	1	0	2	0
CCTCTGTTCGGACTCG	alt_5475_missing	5	21	1	3	36	7	17	4	29	3
CGCATGTCCAAGACTC	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GGACCCTTGAGTGGAG	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GTACACAAACACGTGA	alt_5475_missing	16	55	14	22	68	22	71	16	66	19
ATGCATCAAGCCACCC	alt_5475_missing	3	2	2	4	3	3	1	0	2	1
GGGCTTCATTAACTCT	alt_5475_missing	26	52	40	37	58	31	48	37	64	27
AATTCTCTTTGTGTTT	alt_5475_missing	77	102	75	57	120	78	117	65	145	66
TTATAGCGCCTGTTTG	alt_5475_missing	7	24	13	8	20	16	24	4	30	8
ACCCCCAACAGCCCTG	alt_5475_missing	341	493	463	349	561	378	553	326	498	318
CCCCGGTTTAGTCAAC	alt_5475_missing	5	5	1	6	2	4	6	2	10	6
ACGGTCCCATTCGTAA	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
ATATAGGCGTCGGGGG	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TTATACTTGTTTATGT	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GGACAGCTTATAGCAT	alt_5475_missing	9	9	8	9	22	6	18	9	19	10
TTTATAGTTTTTGCGA	alt_5475_missing	19	38	15	17	28	17	37	13	38	25
TGGCGTAACTAAGCTT	alt_5475_missing	69	103	85	92	130	53	103	65	129	76
GAGCCTCTTGAAGTTT	alt_5475_missing	5	12	5	8	10	11	8	8	11	2
TTGACAGCGTAGGGCT	alt_5475_missing	51	91	48	47	77	48	72	44	71	34
CCGCGTTTTCTTTAGC	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GTAGCCTTTGTCTCCG	alt_5475_missing	30	43	29	29	63	21	70	24	63	25
TTCTCTTTTCATTGGG	alt_5475_missing	15	21	18	19	20	14	20	14	19	20
GTTTCACAATCGACTA	alt_5475_missing	21	47	44	32	45	24	47	19	54	33
GCCAGACAGGGCGTCG	ref_5475_missing	126	260	132	131	241	122	230	100	245	94
TAGATGTTGTTCTTAT	alt_5475_missing	27	43	37	15	47	18	45	17	52	20
ATGCGAGTGTATGTGT	ref_5475_missing	19	68	35	22	64	34	73	20	55	20
GTAGTCGCCGTCTGTT	alt_5475_missing	34	76	47	37	68	41	73	35	70	30
CAAAGGGCCATGAATT	alt_5475_missing	58	64	64	43	80	71	79	51	93	62
CGGGTAACTGTTTTCT	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GCTGACCTTAAATAAT	alt_5475_missing	10	7	12	7	15	8	19	10	17	5
TCCGCCTTCGTCCGTA	alt_5475_missing	22	32	21	20	16	24	14	14	40	11
CGCCCCTCTATGACTC	alt_5475_missing	12	9	8	5	12	5	20	12	21	8
CCTCCCTCCGTGTAGC	alt_5475_missing	12	32	14	16	40	13	38	14	44	14
CTTTCTTGGCGCAGTT	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
ACCGCCATATTCAGTG	alt_5475_missing	4	17	4	9	19	6	9	10	15	3
GTATGGGAAGTAAGTA	alt_5475_missing	6	20	8	4	6	9	12	6	12	6
GAGCTATTCCTATGAA	alt_5475_missing	36	64	30	34	57	42	61	20	64	31
TCATGCTCGCGACCTG	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TATCGATATCAGTCCC	ref_5475_missing	117	216	118	130	184	109	251	100	233	129
ACGTGGCTTCCAGGCG	alt_5475_missing	29	86	58	42	73	33	78	49	99	49
TAGTTAGGCTACTCCC	ref_5475_missing	6	24	7	5	29	3	34	8	20	5
ATTCTGATGCTCGTAA	alt_5475_missing	29	41	23	17	48	17	33	17	42	24
TCGAGATTTAAGTTCA	alt_5475_missing	12	19	16	17	27	11	35	18	20	15
TCAGTTCTAAGCGCGC	alt_5475_missing	21	43	26	17	49	24	52	21	40	29
GTTTCAAACCTAGCGA	alt_5475_missing	18	42	41	28	46	27	47	16	50	21
TCCGAGCGTGGACCGT	alt_5475_missing	45	73	51	53	61	34	75	36	90	28
CCACTTATTCGTGAGT	ref_5475_missing	7	17	14	10	15	11	13	10	24	11
TGACCTATATGATAAC	alt_5475_missing	4	12	2	4	9	0	12	0	13	2
ATTTTCGTGTGACTCC	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
CGCTACGTCTGAGCGA	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TTAGTCAACACGTAGT	alt_5475_missing	34	81	42	39	66	37	80	41	59	32
TACCCGAACAATAATT	ref_5475_missing	13	31	14	14	23	16	22	24	12	24
CCGGACCGTTAGATCC	alt_5475_missing	20	45	19	20	53	19	41	14	51	12
TTTTTGAGCTAAATGT	alt_5475_missing	50	46	51	62	68	43	86	57	77	54
GGTGTATTGCTCTCAT	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
CATAAAATACCCACTT	alt_5475_missing	34	41	46	21	44	24	48	30	61	22
TAATTGGACCCCTCCA	alt_5475_missing	23	38	24	26	43	11	40	15	55	19
AACTAGGCTCCCGCGT	ref_5475_missing	4	55	7	6	57	6	49	7	39	9
TTTCACATGAGGCATC	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GCTGTGTTAGATTTGC	alt_5475_missing	8	28	23	12	40	24	43	20	31	15
CCTTCTGAGAATGATA	alt_5475_missing	4	16	8	9	18	6	20	6	30	1
TGCCGGTTGATGTAGC	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
CCGCCTCCGTCTGTAT	alt_5475_missing	0	12	3	0	11	2	6	3	12	2
TGTCTGTTCGACGCAG	alt_5475_missing	18	41	18	22	37	20	37	22	40	23
GGTATGGCGTAACTCA	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GTCGGTTCTAATATCT	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
CAGTTACTCGTTAAGC	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TGTAGGCCTTGAACGT	alt_5475_missing	8	10	12	13	12	11	13	12	12	10
GGTGCGTGATTTGTTT	alt_5475_missing	9	16	9	9	18	10	24	13	15	8
GCGGATGACGAGGATT	alt_5475_missing	6	10	10	3	6	8	13	7	13	5
GTAGTATATTTCATCA	alt_5475_missing	194	308	239	175	355	186	311	184	350	190
TTATCGGAGCAGCTCA	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTGTGCACGTTG	alt_5475_missing	7	16	7	5	14	5	12	3	10	6
GGCCGTCCGATTGAGG	alt_5475_missing	5	10	7	2	10	7	9	2	14	5
TAAGAGCCGCAGATTC	alt_5475_missing	22	42	20	33	34	18	42	30	31	27
TTGCATCGCTGCGAGC	alt_5475_missing	28	38	29	16	35	29	34	23	35	16
CTTTCGAATCTATCCA	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TTGAATGTTTCGTAAG	alt_5475_missing	32	51	41	33	59	23	63	29	58	29
TTCAGCGCTTTAGTAG	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TAAGTTCAATTGCTTT	alt_5475_missing	16	24	20	15	22	24	24	15	29	10
AAATTTAAGTGCTCCG	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
GTCATGGAAAATTCAT	alt_5475_missing	39	73	66	50	80	33	69	45	52	34
TTCTGTAAGTGGATAT	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
TATATTTGTACATATA	alt_5475_missing	31	72	35	35	54	37	74	37	61	32
AGTTTTTGGTTCGCGC	alt_5475_missing	17	37	13	22	27	22	44	14	36	14
ACCAATAGAATGGGCC	alt_5475_missing	10	20	12	17	28	19	33	16	32	19
CGTTGATTGATGTCAG	alt_5475_missing	24	32	22	16	23	12	33	15	21	14
ATAGTGTCTGGGGTGT	ref_5475_missing	6	19	8	2	12	3	12	6	15	7
TCACATCATTGTATGA	alt_5475_missing	0	0	0	0	0	0	0	0	0	0
AGTGTACATGCCTGAC	alt_5475_missing	20	20	9	16	32	13	26	9	23	19
GACTTCGACATGTCTG	ref_5475_missing	51	81	72	57	74	57	88	51	79	52
TTTCGTGCTCGACGGT	alt_5475_missing	11	9	30	7	24	8	23	6	24	5
GCGATTTCTTTCCCGT	alt_5475_missing	6	9	9	7	8	10	8	6	13	8
ATTCCTTTGGGAGTGA	alt_5475_missing	11	21	19	31	33	25	33	19	44	13
TGGCCAAGGTCCGTAG	alt_5475_missing	40	56	43	48	67	26	45	21	49	16
TGTGTTAGTGAGAGAT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCGGCTAATGCAG	alt_3161_reverse	18	19	19	26	20	20	22	27	13	25
GCAGATATCTGTGGGT	alt_3161_reverse	114	137	134	105	161	94	159	79	152	101
TCGTAACTGGGATTGC	alt_3161_reverse	16	27	20	21	23	16	21	13	45	12
AGTTGACTAATGTGGT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
GCAACTTCTTAGAACT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTGGGGCTTTTCT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCACTTTCGTGGG	alt_3161_reverse	30	13	23	19	22	21	29	22	29	17
GCCTTATCGGAAGTGC	alt_3161_reverse	0	2	1	1	2	1	0	1	1	0
TAATGCTGGCGCGGGT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TACCCACGCAATCGAC	alt_3161_reverse	8	6	5	5	7	6	4	1	4	5
GTCGTGGCAGGGTGGG	alt_3161_reverse	52	61	57	52	57	57	45	56	67	56
CCGCTCCGCCGGGATT	alt_3161_reverse	5	22	15	17	23	9	17	18	20	12
GTTCCTGCATCATCCA	alt_3161_reverse	30	38	31	22	31	26	38	28	33	22
CATTTTTGTAGCGCTT	alt_3161_reverse	11	13	16	7	19	7	25	10	15	10
TCCTCATTACTACAGG	alt_3161_reverse	12	14	18	13	23	11	17	14	24	12
ATCGTCCTGAAGCCTC	alt_3161_reverse	13	19	22	14	26	16	22	17	27	19
GCTCCGCTCCGTTGTG	alt_3161_reverse	44	69	70	67	83	57	90	68	91	52
CTTGTTTGATGGTGGT	alt_3161_reverse	5	5	8	4	8	2	5	6	6	4
CAACGGCCCTCTCCTT	alt_3161_reverse	7	11	8	5	7	3	12	6	15	2
CGCCCGGGTTAGGCTC	alt_3161_reverse	67	81	83	66	71	58	77	57	103	47
CGTCTGGCTTATATGG	alt_3161_reverse	99	118	110	84	87	81	96	65	100	76
TTATGCATCGGTTGAG	alt_3161_reverse	45	79	43	62	95	55	74	46	96	37
GCTGCTCATGCTCTGG	alt_3161_reverse	22	42	40	14	39	26	31	24	41	22
TGCTTGCTGCTTACAT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
ATCCACGTCAGCGTGG	alt_3161_reverse	136	182	133	118	192	114	150	134	170	108
CAGGTATATTCGCTTC	alt_3161_reverse	60	54	49	42	63	63	67	46	64	39
GTCCATGTGCCGGAAC	alt_3161_reverse	24	23	29	21	20	13	28	19	29	30
AAGCTTAATATAGTGC	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGTTTTAATCGTT	alt_3161_reverse	24	27	23	18	37	21	32	28	27	26
TTGGACTACGCTTCCC	alt_3161_reverse	3	10	9	6	13	5	11	3	3	9
TCACGTGACGCCACCC	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
AGATCACTCGTGCTAC	alt_3161_reverse	23	21	26	28	26	23	32	33	29	23
ACATTTCTGCGTAGTA	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGCAGGTGGCCAT	alt_3161_reverse	28	36	41	31	36	28	22	24	44	38
CCGGAAATTGGCTGGT	alt_3161_reverse	12	44	11	21	38	12	42	12	41	11
CTGAGGCCGTATGATG	alt_3161_reverse	8	7	12	6	10	5	11	7	9	5
GCATTCGGTGCGTCGC	alt_3161_reverse	40	62	47	37	59	44	61	54	69	44
ACATGTTTCAGTCTTG	alt_3161_reverse	7	8	1	5	4	3	5	8	4	4
GTGTTCGGAAAAATAT	alt_3161_reverse	49	70	41	52	64	44	59	34	58	50
AGTTCCCCTGGTGTTT	alt_3161_reverse	4	5	6	4	7	8	5	15	11	1
GCGGTACCTCTTGGTG	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCGCGACAATCGG	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTGGCGGGTTTCG	alt_3161_reverse	100	132	150	121	155	109	132	100	152	113
GCCCATCCAGAGTAGA	alt_3161_reverse	51	52	55	56	61	55	68	42	52	41
AGTCGGGCATTACCCA	alt_3161_reverse	48	58	83	45	75	54	64	65	67	46
GTCCGGTGGTATTTAC	alt_3161_reverse	146	201	148	139	180	136	215	135	215	108
TAATGTATAGTGGTGT	alt_3161_reverse	14	24	26	24	34	15	36	15	33	19
CAGTGCCTCGCCTCGG	alt_3161_reverse	51	68	59	56	82	48	70	55	55	49
TTGGTGCTCGGTATTT	alt_3161_reverse	64	99	74	57	80	50	103	59	100	52
TGACGTATGGTGCCTC	alt_3161_reverse	7	23	16	20	26	15	20	17	23	19
ATGTAATCCCTACGAA	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGGTAACTACTCC	alt_3161_reverse	17	28	11	17	20	8	23	14	26	16
GGCCGACACACATTGG	alt_3161_reverse	11	16	11	17	14	22	25	12	16	18
TCACCACCTACAGCAA	alt_3161_reverse	11	11	9	9	14	14	11	12	10	10
CTGGTGACGATTACGC	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGCTTAGACAGCC	alt_3161_reverse	7	18	8	12	16	6	14	2	22	6
GCCAGATAGTTGCACA	alt_3161_reverse	33	48	34	27	37	24	44	37	48	19
GATGTCAGTCCGGCAC	alt_3161_reverse	25	30	24	32	30	26	34	24	30	17
TCTCGCCCAGCCTTTT	alt_3161_reverse	40	27	29	24	37	27	40	18	31	19
GGCGGACCATGCTCGA	alt_3161_reverse	18	28	30	26	29	15	42	20	42	21
TCGGTAGCGGCTCATC	alt_3161_reverse	15	7	8	5	18	8	6	6	10	9
ACGAATCGTAGTGATA	alt_3161_reverse	33	30	39	31	33	28	51	28	33	27
AGGTCTACTCGACTCT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CATATCACGCTGCTAC	alt_3161_reverse	11	26	21	16	36	16	24	15	42	15
CAGCACCGGTTTGACG	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CAATTAAACCTGTAAT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTTGGGATTATTT	alt_3161_reverse	98	120	103	90	122	73	147	87	137	79
TGCAATTTGCGGGCTT	alt_3161_reverse	10	17	11	10	18	14	17	16	18	9
GATATGCATCTTGGTG	alt_3161_reverse	60	65	73	60	74	42	74	51	78	55
TCGCCCTCCCATGGCG	alt_3161_reverse	78	74	99	56	70	71	67	52	68	56
TCCCGTACGCTTCGGT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTGTAACATGTA	alt_3161_reverse	46	61	49	37	62	50	60	42	50	49
TAGCAGGCTTGAGTAG	alt_3161_reverse	16	23	11	23	16	12	19	4	27	26
TCAATGTCAGGGCTTC	alt_3161_reverse	36	36	25	26	32	23	24	24	35	22
AGGAAGGGTTTGTCAT	alt_3161_reverse	35	48	60	46	58	43	84	49	56	56
ACCGGATATGGCCGTA	alt_3161_reverse	97	114	119	108	91	96	95	112	93	100
GCCTGTCTTTTGCATG	alt_3161_reverse	4	13	3	10	14	12	11	7	15	6
AGACGGGTTCTGTACC	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCCTGGAAATAGT	alt_3161_reverse	59	64	50	58	74	54	55	51	82	44
CTGTGTACCTGGTATA	alt_3161_reverse	3	11	12	6	8	6	4	7	5	4
CCTATAGAGAAGCCAC	alt_3161_reverse	33	30	33	31	31	23	30	29	32	22
TATTGATAGCCGCCAT	alt_3161_reverse	12	12	15	21	7	5	8	17	8	13
GTTTTGTTCACCACTT	alt_3161_reverse	41	43	49	38	52	36	59	36	41	46
ACTGCAATGACTTTCG	alt_3161_reverse	5	3	4	2	2	2	0	4	9	1
GCCCCAAGGTTAGCTT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCGCCAATCCCAT	alt_3161_reverse	10	31	15	10	17	10	18	18	16	18
CATATCTCGCATATAT	alt_3161_reverse	13	9	6	5	9	6	14	5	11	5
AATGATACACTTGTAT	alt_3161_reverse	48	68	54	59	70	44	54	33	72	44
CTTCATATGCGGCGTC	alt_3161_reverse	42	63	63	43	61	56	61	42	77	40
CACTTCATTAATCCTT	alt_3161_reverse	17	26	32	32	40	22	35	23	24	17
TTTGTGGGATTCGCTC	alt_3161_reverse	105	120	104	101	122	114	126	109	150	88
TCGCGGTACGGCTGGG	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
AAGAGTCAGTTCCAGA	alt_3161_reverse	59	81	85	76	74	66	80	64	89	53
TGGCTATGCTAGATAA	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CGCATCCAGACTGTTG	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CTAGGAAGTGGCTCGC	alt_3161_reverse	6	7	8	6	11	7	3	8	2	4
TGGTGAGCTATGGATG	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TATGCACGGGATTCGC	alt_3161_reverse	32	40	33	31	47	21	55	23	41	16
ATTTCACTTTACTGTA	alt_3161_reverse	92	91	96	84	126	81	113	87	112	81
CGCTGGTGCCTTGTCC	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TACCTTTAGGAATGTG	alt_3161_reverse	4	25	3	7	30	2	10	2	20	0
GAATGTATAGTGCATG	alt_3161_reverse	32	35	36	27	56	24	56	39	43	33
CGCTTCACTAAGCACC	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGTTTAGGTGATA	alt_3161_reverse	13	22	12	14	11	13	24	3	32	9
CGTTCTCCACATCCAT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCTAGTTGTTTGTACA	alt_3161_reverse	106	207	140	124	230	99	244	125	232	117
ATTGGCTGCAGATATA	alt_3161_reverse	5	12	5	1	4	3	8	11	10	5
AATGTTCGCGCTCATT	alt_3161_reverse	23	32	36	35	56	22	33	26	39	41
ATCTGGATTTTATTTG	alt_3161_reverse	40	40	40	39	52	35	54	47	62	35
TTCACCATCTACAACG	alt_3161_reverse	0	0	0	0	1	0	1	0	0	0
TTTCTATGATTGGCTA	alt_3161_reverse	11	20	22	17	37	14	39	15	30	25
GAACCTTCTGACTTAT	alt_3161_reverse	4	7	0	0	3	6	12	4	2	3
TCATAATAGACCCCGC	alt_3161_reverse	2	6	3	0	9	3	0	0	6	1
GGGTCGTTAATTTAGG	alt_3161_reverse	354	210	378	313	199	338	225	271	213	267
ATGCTAGAGTGTCTAG	alt_3161_reverse	77	113	64	55	108	60	145	49	156	57
CGTCCGCACGTGCCGT	alt_3161_reverse	15	45	13	21	32	13	24	11	31	21
GTCTACGTTATTTTTA	alt_3161_reverse	45	51	70	35	51	40	57	48	69	37
TTAAGTAGCTTCCCGG	alt_3161_reverse	29	35	30	13	33	19	50	23	39	31
GTTGGCAGCAATCCAA	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTAATTGTGAATT	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
AGAATGGGATCGATCG	alt_3161_reverse	40	50	54	48	71	46	55	50	64	32
GGGTTCACAGTAGTGC	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
CCATTTCGGTATGCCA	alt_3161_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGCCGATGAACGT	ref_285_reverse	11	9	11	9	14	10	25	7	20	15
AGGGTCGCTCGGATGG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCAACTCTGTTTC	ref_285_reverse	36	44	36	41	62	28	59	41	53	39
CGGTACCGTCGTGGGG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCCCTTGATGGCT	ref_285_reverse	4	13	7	4	9	10	4	9	7	9
TATGGTTACCGCGTGG	ref_285_reverse	25	47	53	35	44	27	48	50	39	38
GATAACAGTGAAACCT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGGGCACATACGA	ref_285_reverse	48	90	68	38	92	38	99	46	94	49
CTCTGGGCCTTAATAT	ref_285_reverse	30	40	34	33	45	34	47	29	55	27
ACTGTTAGGCACAACT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTCTGTCTGGCT	ref_285_reverse	11	5	8	10	14	6	11	7	17	8
CAGTTCGCTGGATTGG	ref_285_reverse	3	3	3	5	6	4	1	2	2	0
GAGATATCGGCTTTGT	ref_285_reverse	10	20	16	9	15	21	21	8	28	14
CGTACTGTTTAATTAA	ref_285_reverse	46	71	48	41	71	37	73	48	85	25
ACTCTATTACTATTCT	ref_285_reverse	65	78	81	64	90	69	78	50	86	63
TCATAGAACTTCGCTC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATGCTCTTAGAC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCGTCAGTCTAGG	ref_285_reverse	3	17	11	7	8	4	9	5	4	5
CTCTATCCCGATAGGA	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TTATAAGTTCCGTACC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCCATTAGCCCCT	ref_285_reverse	23	39	31	24	42	26	28	26	48	15
GCAGTTTTATGTACTT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
ACTAACGCCATTAGCG	ref_285_reverse	3	9	3	0	11	8	2	4	10	3
GCGTTTTTAGTATTTC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TACTGGTGCTGTGGCT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGCGAGTACTGC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
ATTCACTCTTTTCAAA	ref_285_reverse	9	21	20	23	20	18	33	17	29	15
CACGGTGGGTTCTTTA	ref_285_reverse	9	18	13	8	9	7	10	9	22	6
TTACTCACCTCGCAGT	ref_285_reverse	3	28	3	6	20	3	29	6	24	4
AACTCGTATATTCATA	ref_285_reverse	56	69	72	74	93	57	89	46	105	51
GGTGAAGTACGGAATG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TGATCATCTCCTGCGT	ref_285_reverse	31	44	44	46	52	33	56	32	49	29
GTAAACTCGCGTTTGC	ref_285_reverse	248	387	270	258	351	242	414	216	435	257
TCCCATCTCATTCGTC	ref_285_reverse	36	133	31	39	98	23	105	29	106	28
AGCCTGCAGCGGCCAT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CATCCGGTCTCAGTAT	ref_285_reverse	0	2	1	0	1	2	2	1	0	0
CAAATGCGTTAACTTA	ref_285_reverse	4	11	15	11	15	8	7	7	14	5
ATATACAGTGTGCGCC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCAATGGAGTCG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CATATTCTTACGTACT	ref_285_reverse	15	25	18	14	42	18	31	19	27	24
ATAGTCGTTTTAAAAT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTGCTCGTGTGAT	ref_285_reverse	35	71	47	51	58	34	64	46	72	31
ACTTAGCCCCCGGCCC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGTGTTAGCTGCT	ref_285_reverse	14	16	9	13	8	11	21	8	9	11
TTTCTCAATACGTAGT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
GCCAGGAGAATGGTCA	ref_285_reverse	115	227	173	158	231	152	286	129	243	133
TGTTAGCCATGAGGGG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTAACACGAACCG	ref_285_reverse	1	10	1	4	4	3	7	3	1	6
ACTCTTTGCTTTAGCA	ref_285_reverse	57	70	66	65	100	44	93	48	102	52
ACCGGTGTAAACTTGG	ref_285_reverse	14	33	14	18	52	12	55	11	37	9
CTGGATTTATATCTCA	ref_285_reverse	24	27	28	16	22	20	16	18	16	12
ATAGGAGATGTCATCG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAATTTTTCTATT	ref_285_reverse	69	110	88	81	103	76	82	65	120	80
GGATTCGATGGCCTTG	ref_285_reverse	123	157	150	123	127	109	180	100	183	105
TGACATGACTGCATTG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATGACCATGGAA	ref_285_reverse	53	76	64	55	64	52	75	42	74	33
GAGCTATAACGTTTTT	ref_285_reverse	38	35	31	36	57	32	39	28	54	28
GTTTGCGTGTATCCAG	ref_285_reverse	12	26	11	14	26	14	25	20	18	18
CTCGTCTTAGTTTTGT	ref_285_reverse	4	10	9	10	17	6	10	11	6	5
TATTGTAGCTATGTCG	ref_285_reverse	132	181	155	133	190	126	206	129	204	129
GCTGTATTTGCGCCAC	ref_285_reverse	5	5	2	1	3	7	4	2	6	1
ATTTATAGCGTGCCCT	ref_285_reverse	118	176	166	127	181	125	194	134	191	98
AAGAGCTTCAGGTACG	ref_285_reverse	14	18	21	17	23	16	15	12	17	21
GTCCTTCGCGGTTGCG	ref_285_reverse	18	26	23	13	28	22	25	10	32	15
CTGCGATCGGTTTAAT	ref_285_reverse	13	25	15	13	15	15	28	12	13	9
CTTACTTAGGACGTTC	ref_285_reverse	3	11	3	6	9	6	2	6	8	8
TCGTAAGCTGCACGTC	ref_285_reverse	187	189	221	168	204	151	206	151	229	142
TACTGAAGTGTACATG	ref_285_reverse	52	121	70	64	105	76	108	74	104	56
AGCTATTGTGGCGAAT	ref_285_reverse	9	11	11	9	14	6	19	1	11	19
GCTTATGTAGTCATTG	ref_285_reverse	11	21	27	15	19	17	24	19	21	10
GGGGAAATCTATTTTC	ref_285_reverse	14	12	10	11	15	10	17	5	20	6
GGGCCGAGCTTCTGTA	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTTTCACGCACGA	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TCATTACTTCCCATCC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTATCATTTGGGC	ref_285_reverse	26	27	30	29	43	27	25	27	37	27
ACTCAGTTTAAAGACT	ref_285_reverse	12	19	19	13	19	15	36	14	33	19
CAATATAAATGCAATG	ref_285_reverse	15	25	25	26	26	11	31	12	35	14
TCTCTTGAGGGACTAT	ref_285_reverse	78	124	104	88	141	76	140	85	145	98
GGGCTACCTCAATGTG	ref_285_reverse	23	36	22	19	26	17	32	20	37	18
AAAGAAGTACGTATTG	ref_285_reverse	11	13	13	8	18	5	12	8	16	5
AGCGCTTGCTGGGGTA	ref_285_reverse	136	233	162	129	228	146	253	128	256	122
ACTTTCAGGTCTTCTT	ref_285_reverse	31	35	27	32	47	30	31	26	31	23
TGAATTTCGTTGGGTG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCCTTGTCTCTTG	ref_285_reverse	1	6	10	4	9	6	3	2	4	2
TAAACCCGTTTGAGTG	ref_285_reverse	37	68	49	40	84	44	53	52	94	37
GCTTCTGCGCGTCTCT	ref_285_reverse	41	55	26	15	27	29	26	18	44	24
AGCCGTCCGTATATAA	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
ATGATTCCCTCCGTTA	ref_285_reverse	11	15	10	10	19	8	15	9	16	10
AGGATGATTAATAGCA	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGATAGATCACCA	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TATGTCGTGCAAACTC	ref_285_reverse	14	33	17	18	32	19	30	20	44	12
ACCTTCTTGTTGTTGT	ref_285_reverse	31	44	28	44	52	18	54	22	56	36
TTCATCATAATTTTGG	ref_285_reverse	38	49	38	30	43	33	45	29	50	41
CCGCACGTTCGACTCC	ref_285_reverse	16	32	18	13	25	14	37	16	30	13
AAGATTTTCGAGCCAT	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTAATTCTCGGTC	ref_285_reverse	4	7	8	3	8	4	4	5	3	8
CAATATCCCCTTGTAC	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTACTGTGACTTA	ref_285_reverse	2	13	6	3	3	3	8	3	4	3
GACGCTAATGACTAAT	ref_285_reverse	7	8	7	11	4	4	4	5	11	4
CACATCGTCCCCGCCG	ref_285_reverse	9	69	20	17	75	15	53	10	76	7
TAGGTTTCCTACAATG	ref_285_reverse	63	122	71	70	131	58	142	71	118	47
CGGTTCTGGTCCAAAC	ref_285_reverse	14	29	23	19	29	18	30	25	41	20
ATCCCTACTCCTTAAA	ref_285_reverse	25	29	18	15	17	13	24	10	23	10
TACACCGGGGATTCAA	ref_285_reverse	47	63	74	49	67	53	97	58	102	48
AGTTACGATGGCTGGG	ref_285_reverse	0	0	0	0	0	0	0	0	0	0
TTCTATCAACGTATTG	ref_285_reverse	7	14	14	7	19	8	8	7	9	6
GCACACGGTTCCCATA	ref_285_reverse	17	20	15	11	18	8	9	15	20	16
CGAACGCCCAGCCTCC	ref_285_reverse	67	73	77	65	91	78	80	68	90	69
GAATTCTGCTCGTTGC	ref_285_reverse	17	24	13	10	26	16	11	17	15	18
CTGGCCCGGGACATTC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTCAAAGCAGTG	alt_1617_fdr	31	26	27	18	27	20	29	18	29	19
GGGGAACATAGCTCTC	alt_1617_fdr	1	0	1	0	2	0	0	0	0	0
ATCGGGGACGTACTCA	alt_1617_fdr	134	153	162	152	139	122	162	131	197	111
GCTTACGGGTCACCGT	alt_1617_fdr	43	40	31	37	42	29	36	41	31	34
ATGGTATACGACTTTG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGTAACCATCAAT	alt_1617_fdr	126	98	144	140	113	113	96	103	136	85
GTAGGCCACTATGTTC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGGTTCTCCTTCT	alt_1617_fdr	33	26	42	39	29	34	28	45	34	28
CGCTCTATACCTAGGT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTATATTTCCAGGATC	alt_1617_fdr	9	16	16	33	14	12	17	23	13	9
CAGCTCCCCTGCGAAC	alt_1617_fdr	10	35	16	6	37	16	48	7	34	7
AACGACTACGCAAGTC	alt_1617_fdr	18	15	29	21	16	22	14	15	14	23
CATACCAACCGGCCCC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCTCATGATTTTCGAT	alt_1617_fdr	12	8	6	9	7	7	13	8	13	9
CGCGGATCACTTCATG	alt_1617_fdr	14	13	6	9	4	10	11	12	9	10
ATCCCATAATTCCTGA	alt_1617_fdr	19	16	27	23	25	19	19	14	29	14
CATACTGAAGTCTATC	alt_1617_fdr	4	6	8	4	5	3	5	7	9	2
TGACAATTCAGTGCTC	alt_1617_fdr	61	39	64	49	59	49	57	33	47	44
CTTCGGCAATTCCGGT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTAGTTGTCTAT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTACTTAGTTAAC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGTATACCCTAGA	alt_1617_fdr	5	1	3	2	6	0	4	2	5	4
TTCCTTAGCTTGCGGA	alt_1617_fdr	99	74	127	129	91	96	84	90	86	91
ATTCACAGCAAATGTC	alt_1617_fdr	9	5	6	8	6	5	6	4	7	7
AGCCCTTCTTTGCGAA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GAAATTACTCTCATGA	alt_1617_fdr	11	14	11	7	14	11	18	6	9	7
GTGACCACGTATATTG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATGGACTTGATTTGCA	alt_1617_fdr	28	25	33	22	17	30	16	20	19	30
TAATCTCTCTCATCCA	alt_1617_fdr	23	27	28	36	20	27	17	19	32	22
CTTGTTATGCGTTTGT	alt_1617_fdr	23	25	38	20	12	16	20	25	22	15
CGGCCAGGTCTTCGTA	alt_1617_fdr	9	4	4	5	5	3	6	4	10	8
AACATCATCTTGACCT	alt_1617_fdr	56	43	76	69	45	49	60	57	44	53
AACCCGTAGAGTCCCG	alt_1617_fdr	41	21	41	35	29	27	30	33	32	31
ATTTCTTTGTTTCCGC	alt_1617_fdr	34	22	30	31	13	18	24	25	21	28
TTGATACCATTCAGAA	alt_1617_fdr	21	11	19	18	19	20	19	7	21	17
GTTGTTGGTGGCTGGT	alt_1617_fdr	68	71	80	72	59	74	59	51	51	65
ATTCCTTGTCGTGGGT	alt_1617_fdr	14	4	11	14	11	4	14	10	7	9
TGTGTGCTTGTTCGCG	alt_1617_fdr	27	27	43	32	35	48	39	32	33	40
CATCGAGAGTCTTTGA	alt_1617_fdr	34	19	28	32	25	31	27	23	26	14
ACAAGGCTTGCCGTGT	alt_1617_fdr	97	61	126	99	77	67	54	67	85	76
CCGTTGTCGTTCTTTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCAGAATGCGGTTAGA	alt_1617_fdr	3	2	0	0	1	2	1	1	3	2
ATTAGCTGCATGAACA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GCAACCTTCGTTTAGC	alt_1617_fdr	54	57	66	45	56	50	41	54	70	35
AAGGGGTTCTACGTTA	alt_1617_fdr	30	18	39	28	23	27	27	20	10	24
GATTGCGTATTGCAGG	alt_1617_fdr	27	21	41	39	33	32	29	33	40	18
GCAACTGAACTCCGCT	alt_1617_fdr	3	3	5	7	2	1	7	4	10	4
TACGGCACGAACTTAG	alt_1617_fdr	40	37	47	47	41	39	43	38	34	36
CTTGTTCATCGCGCAA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GCTGACCTCTCCCGTG	alt_1617_fdr	6	8	7	7	4	3	2	2	13	7
AAGTCGTAACTATGAC	alt_1617_fdr	4	5	3	1	8	5	4	1	2	3
TCCTTTTACAACGGTT	alt_1617_fdr	22	18	23	6	22	12	25	15	20	19
GTGCTATTGTTACATC	alt_1617_fdr	0	0	1	2	0	0	1	0	0	0
AATGATTTGCCCGGCG	alt_1617_fdr	9	13	19	17	10	17	14	16	23	21
TACTTCCAGGTTCGGA	alt_1617_fdr	29	26	36	33	26	25	16	23	31	29
CTAATAACCCGAATGG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GATTTCCTAACACTTG	alt_1617_fdr	15	13	18	13	8	19	10	14	22	11
GTTCCCCGAACCCCTT	alt_1617_fdr	63	143	115	71	171	63	176	57	161	72
AGGTCTTTTCCTCGTG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCGTTTTACCCGA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AAATGTCAGAATCTCG	alt_1617_fdr	40	29	48	43	23	37	23	43	26	35
ACACAGATGTATTTTA	alt_1617_fdr	21	10	30	20	21	11	16	23	22	17
TAACTAGAACCGTGAC	alt_1617_fdr	6	7	5	7	4	10	11	12	12	4
CGTTACATGCATCGAC	alt_1617_fdr	105	114	112	92	99	87	98	104	117	100
ATACTAAATACGTAGT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATATGTGCCTTGTCGC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTTCAGATGGCAT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGGGAGTGAGCTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CCTCAACAATGGGATA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGAAACCAACGCG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCTTTACCTAGGT	alt_1617_fdr	331	294	314	325	294	289	302	278	336	275
GGTAGCACTAAGGTTC	alt_1617_fdr	154	123	169	142	133	109	158	132	141	122
GGTGAGTTGATGTCTA	alt_1617_fdr	197	145	218	200	153	177	153	189	158	177
GGGATCATATCATGGA	alt_1617_fdr	50	52	63	64	47	43	58	48	45	44
CAGGGGTTTACACTCT	alt_1617_fdr	167	134	178	166	111	110	106	184	144	153
AGCATATACGGTGAAA	alt_1617_fdr	14	8	20	18	10	20	11	11	18	5
ACTCTTCGAATGATCG	alt_1617_fdr	89	69	116	93	68	86	84	89	83	77
AGTTTACTGCTCTCCT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTTACTGAAGGTTTGT	alt_1617_fdr	1	3	6	1	3	1	0	0	3	5
CGGGTCTAGACAACTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AAGATCTGCTTAGACC	alt_1617_fdr	21	22	34	21	23	29	25	20	19	17
CTCCTGTGTATAAGAC	alt_1617_fdr	7	3	5	4	8	3	11	4	11	9
CGTGCGACGACGTCGG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGAATTTTACGTC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTAGATAACTTTT	alt_1617_fdr	29	23	33	37	29	15	22	25	27	20
GTTCCGTGATATCGCG	alt_1617_fdr	43	27	71	45	45	36	46	55	41	45
TTATGCGCTGGCCTTT	alt_1617_fdr	2	0	0	0	4	3	0	6	0	1
ACTTAAGTGTTGTAAA	alt_1617_fdr	57	44	63	60	80	58	62	53	62	53
GTGTGCTGACTGGAAT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TGGTATGCAGCGCAAA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AATCCGAGCCGGGTAT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CAACCACCCATAGTCT	alt_1617_fdr	15	24	25	27	31	30	33	18	30	14
TATTCTCTATTCGTAC	alt_1617_fdr	60	55	45	62	64	53	49	54	68	39
TTGCGGTGCTGCGAAC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTAGTTAAGTATG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTAACTTACACTC	alt_1617_fdr	4	5	10	10	6	7	15	7	6	14
CTTAGGTCAGCTTCTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CAAAACTCAGTGGATC	alt_1617_fdr	27	30	23	30	43	26	25	29	48	31
GCGGCAGACTACCTCG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GGACTGGTGGTTGGCG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CGCGCGGATGCGGGCG	alt_1617_fdr	11	11	12	21	17	9	8	16	15	8
GTACCCGTGTAACGAA	alt_1617_fdr	20	11	24	17	19	18	23	14	9	17
TCGCAGGCGCTGATAC	alt_1617_fdr	76	46	84	47	43	48	55	70	63	41
ATATGCATGCGAGTTA	alt_1617_fdr	17	5	13	18	14	9	11	11	13	10
TGTGGGTGGGGGAGCT	alt_1617_fdr	53	44	61	81	55	70	61	59	58	47
GTTCCCCGCACCCCTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTATCTTAGCGAACCG	alt_1617_fdr	32	35	56	33	48	28	36	33	50	33
ATGCCCATGTCATTTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TAAAAACCCTGCATAG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGCAAGTCTGATACGA	alt_1617_fdr	11	14	18	19	13	7	7	18	16	7
GTACCATTTCTTATTG	alt_1617_fdr	60	58	72	78	67	56	46	56	35	64
AGAGTTTGGGAATCAA	alt_1617_fdr	2	2	5	0	1	6	6	2	3	3
TATCCAGCTTTTCCTT	alt_1617_fdr	31	10	18	16	12	11	12	11	7	8
TAGGCTCATCCTAAGT	alt_1617_fdr	35	32	27	30	44	26	32	25	27	28
TTTTTCGTTGCCCTGC	alt_1617_fdr	29	31	40	39	28	54	32	45	42	28
TGAACTCTGGGTGCGT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTATTCCCGGGCCGTC	alt_1617_fdr	179	137	169	176	122	151	138	128	142	151
TGGTCAATTTCGCGCA	alt_1617_fdr	17	8	26	15	12	18	26	19	27	21
AAGGTGCGAGTGCTCT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTGCCCTCTACA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTGTCACCGGGGG	alt_1617_fdr	48	49	75	65	68	53	53	44	57	51
AGCTATGCCTTCCTTG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGAAATTTTCTGAATT	alt_1617_fdr	82	55	81	57	46	57	49	74	65	54
TCTGTACATAACTGTC	alt_1617_fdr	7	9	11	1	5	3	7	7	4	5
GTCAGTTTTGTTTAAT	alt_1617_fdr	32	20	35	22	24	28	38	18	30	31
AAACTGGTTTTGCCGA	alt_1617_fdr	46	33	56	58	41	46	43	49	29	34
CGCAAATATTTGGTCA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CAAATAGACTTTTTTG	alt_1617_fdr	43	36	54	36	40	39	56	44	51	29
TCAGGTCTTACGTAGA	alt_1617_fdr	2	3	1	5	4	5	2	5	4	4
CAGCGGCAGCCTTCAT	alt_1617_fdr	25	26	25	17	15	16	13	20	23	21
ACTTTCTTACATTTAC	alt_1617_fdr	12	9	14	12	9	19	9	7	15	18
TGCGTTACGGTCACTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAATCTTGTCCGT	alt_1617_fdr	21	19	34	19	22	32	19	17	19	16
GACTCACTTCATTTTG	alt_1617_fdr	14	20	27	16	12	15	10	20	18	24
CCAGGTCACTAATGGG	alt_1617_fdr	1	8	0	0	5	0	2	0	5	1
GCGTGGCAAAAGTTTG	alt_1617_fdr	11	11	16	25	7	21	14	13	17	18
TCAGTGATATTCTGGC	alt_1617_fdr	30	31	34	33	28	44	28	38	21	25
GTATTCAGTTGGGCGC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AATTGTACTAAATGCG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTCACTAGGTTAATTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTCCTGTTACATG	alt_1617_fdr	31	24	46	38	30	28	35	22	22	29
ATTTTTTTGTCGCCAG	alt_1617_fdr	5	11	24	12	7	14	13	5	10	13
TCTGGCTAGAGGTGTG	alt_1617_fdr	69	64	86	73	78	73	77	69	80	57
GAAGTTCATAGTCATG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GCCGATGGAATATTTA	alt_1617_fdr	18	12	25	18	22	19	23	16	14	13
TGATAGTCTTTCTTGG	alt_1617_fdr	8	13	14	14	9	18	10	12	15	6
CGGGGCCAGCCTGCTA	alt_1617_fdr	7	6	9	8	10	12	4	6	5	5
CATAAAGGGATCCGAG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATTGATCGTCATACTA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TAATTTTGTTTTTGGC	alt_1617_fdr	27	21	51	38	23	46	27	57	23	30
GGGGCTGGGGAACAGC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCGCCCTTTGAC	alt_1617_fdr	23	20	26	28	20	17	22	22	25	24
GCACTACACAAAGCTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTAGGCGGTTTTT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AGATGTATGTAACTAA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CCATTTTTGCTTCGTT	alt_1617_fdr	10	11	12	19	4	10	16	16	15	11
TACATTTAGCAGCCAT	alt_1617_fdr	9	14	11	8	9	8	2	13	13	8
CGCTCGTAATGGTGTA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
AATATACGATGGAAAT	alt_1617_fdr	18	14	20	15	16	15	18	11	10	13
AGCCTGTTTCGACCAG	alt_1617_fdr	16	16	28	25	15	24	22	20	20	15
GCTAATTAACTACACT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GAACTGGTTTTTTTCT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGCGTGATAACAA	alt_1617_fdr	95	107	161	122	126	91	106	104	119	101
CGAAATTCTCCTCACA	alt_1617_fdr	90	74	90	101	76	69	84	73	68	77
CTATGGGCTATTGCTT	alt_1617_fdr	24	30	39	27	23	28	14	26	22	22
TCTATCTGCCAAGACC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTATTTATTGACG	alt_1617_fdr	24	15	28	26	19	31	27	21	20	28
TATCCTTTTCATGTAC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGCACGTATCCAG	alt_1617_fdr	13	8	16	22	14	14	20	13	24	23
GCCATGTATTTTTGTC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CGACCTTCGGCAGTAG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTCATGATTAATC	alt_1617_fdr	100	110	84	98	121	77	101	101	120	83
TCAACGGGATATTTTG	alt_1617_fdr	110	117	158	135	107	132	108	102	96	107
CCCCCGAACGCATCAT	alt_1617_fdr	31	61	42	34	43	34	55	38	50	25
TCCGCCCCGTTGATAC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TCTACCAACACTTCGT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTCTCATATTGC	alt_1617_fdr	50	50	69	53	42	54	54	44	44	46
TGGATTACCTAGGTCT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
GACTACTCGGTATTGA	alt_1617_fdr	7	15	13	7	8	12	16	6	13	4
GCGAGATAATCTATTG	alt_1617_fdr	4	4	4	4	7	3	6	5	4	8
GCGAAAACTCTTTTGG	alt_1617_fdr	103	81	114	103	90	102	99	101	68	94
GTATTGACCCTATGGA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TACGGAACAAGGCTTG	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCCTTCCATCTAA	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATAGAGGCTGTGCTGT	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
TTCATATATATTGCGG	alt_1617_fdr	33	30	29	28	28	26	22	22	31	25
GTTTACTCGCGTCCTC	alt_1617_fdr	0	0	0	0	0	0	0	0	0	0
ATATGTCACATATCGG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGACAGTTATTAT	ref_1269_fdr	56	56	67	56	49	56	50	66	45	44
AGCTCAACTGTCTGGT	ref_1269_fdr	64	69	82	83	79	62	82	73	71	47
GTTGACTTCCCGTTTC	ref_1269_fdr	37	29	40	31	23	26	23	41	26	28
GCCTATCCCGATAAAC	ref_1269_fdr	6	6	7	6	3	2	10	1	6	5
AGCAGTTCCTTAATGG	ref_1269_fdr	4	6	2	3	4	7	5	6	1	4
TTGGTGTGCTATTCCA	ref_1269_fdr	19	23	21	21	24	25	13	14	26	28
TGTCGAAAATCGAGCG	ref_1269_fdr	59	50	56	67	50	43	43	55	43	58
ATCGGCGTAAGGACCT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGCCAGTCTGTGA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTGATCGCTAAT	ref_1269_fdr	7	9	9	13	3	8	10	6	10	9
CTCATAAATACATGGG	ref_1269_fdr	47	40	63	65	44	50	39	50	52	49
TTTCGGTAGCTGTCGC	ref_1269_fdr	10	11	19	18	13	11	15	13	15	10
CGGCTTTAGTCACCGC	ref_1269_fdr	108	123	143	134	130	115	91	102	116	111
CGGTTAATATGATGTA	ref_1269_fdr	24	18	27	19	20	25	19	27	19	19
TGTTGCTAACATTTTT	ref_1269_fdr	75	50	86	76	43	80	63	80	63	52
CAAGCACGAATTCGGA	ref_1269_fdr	29	32	29	32	22	28	22	25	37	24
GTAAGAATCGTGGCTT	ref_1269_fdr	22	10	28	29	15	24	12	27	13	9
ATACTTTAAGTTCTTT	ref_1269_fdr	214	146	268	182	172	191	150	187	173	176
GAGCCTCCTTTATGTA	ref_1269_fdr	73	34	93	76	62	64	53	66	62	86
AAATTAATCGTCGCAC	ref_1269_fdr	24	24	29	44	16	29	15	37	24	31
CGTTGCTGTGTTGTGG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CATTAGCTTAAACATG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ACGCACACTTGCGTCC	ref_1269_fdr	23	20	21	17	19	20	20	16	28	9
ATTTTTCTCGCTGGTG	ref_1269_fdr	11	2	8	8	6	2	4	4	5	3
CTGGGGTCGTAAGGCA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AACTTGTCTCTGCTAT	ref_1269_fdr	8	7	9	10	11	13	9	11	4	9
GTACGGACCTGTGATC	ref_1269_fdr	137	103	143	152	108	148	88	131	112	135
TCGTTTCGGAACCTGG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GGGCATGCTATGTCGC	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TCTCATTTGTACTATC	ref_1269_fdr	40	34	43	75	32	38	45	47	28	33
CAGGGACGTAAATGTA	ref_1269_fdr	57	37	85	58	36	42	43	51	51	52
ACGTCTCAGATACGGG	ref_1269_fdr	32	22	39	37	22	42	22	30	32	38
TGCGTTTCTGTGGTCT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGAATGCCATCTG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GCGCAGTTTTGTATGA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CCCAAGCTCTTCGGCT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTTTGGTAAATAT	ref_1269_fdr	11	13	11	12	8	17	12	16	9	15
GACACCGATCACATAA	ref_1269_fdr	17	14	19	8	14	19	10	20	19	13
CTGGTTACTGTTGAGA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GCAGGGTCATCCTTTC	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AACCTTTCGTGACATT	ref_1269_fdr	364	256	415	351	279	300	328	274	288	288
TGATGAACGCGCCTCT	ref_1269_fdr	9	7	16	16	12	12	8	5	6	6
CCGATGAAAGTTTCGA	ref_1269_fdr	140	95	180	121	84	145	112	126	115	126
GGGGGTAAGGCCAGTG	ref_1269_fdr	93	79	126	106	84	93	68	95	88	75
AACTATGTAATCGGAT	ref_1269_fdr	29	14	33	30	28	27	24	34	24	27
ATTCATAGCTATGTCT	ref_1269_fdr	76	75	85	89	52	75	66	76	54	68
TTTTACAGTATTTTGG	ref_1269_fdr	28	24	42	36	14	22	29	29	23	28
TAAAATATCTGACGGG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTTCGTATAGCCG	ref_1269_fdr	19	24	31	29	19	14	14	21	24	25
ACAGGTACCCACACTT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTCTATTGCGACTGCT	ref_1269_fdr	91	71	115	90	91	77	92	78	94	85
TTTAATCATTCGAGAT	ref_1269_fdr	62	41	81	85	51	62	39	59	64	51
TCGATTTTCAGCGCCG	ref_1269_fdr	61	46	82	75	45	71	72	59	48	71
GTATCGTGCTTAGTTC	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTTGTTTTTTTCC	ref_1269_fdr	13	5	14	18	12	19	5	22	11	14
AGGATATTTCAAATCA	ref_1269_fdr	42	32	56	48	35	53	27	50	32	24
TTTGTCTGGCTGCGAA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CACCTTTCATACCCGG	ref_1269_fdr	26	20	32	29	20	29	19	23	39	18
CCCGCCCTAGCTTGCA	ref_1269_fdr	60	30	53	41	21	36	36	46	36	38
GTCGTAGTCTGAGCTT	ref_1269_fdr	85	61	107	110	70	84	65	78	63	79
TGCGGTAGCGGGTAGT	ref_1269_fdr	4	3	4	5	0	2	1	3	1	5
CGATTATCTAAATGCA	ref_1269_fdr	21	18	29	31	17	23	23	24	17	31
TTCGAGTGTGAGTTAA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAGGGATTCGGAA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AACATAATTCATGGAG	ref_1269_fdr	52	32	91	69	41	45	44	46	36	55
TTCATGAGATTCAGTT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCAACGACCTGAA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGGCCGATCTCAT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCCCGTTCGCCAC	ref_1269_fdr	17	16	21	16	14	10	10	17	6	12
TAGCACAGCCCGAGTG	ref_1269_fdr	13	8	11	11	4	14	9	16	14	15
AGCGATACTCCGTGCC	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTCTATTCCGAAAATC	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AAAACCCATTCTGTCA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGTACGTTCATGTGAC	ref_1269_fdr	24	13	37	16	16	29	17	21	12	15
CGAGCCTTAGTTCTAG	ref_1269_fdr	29	87	37	25	88	31	74	21	96	28
GATTGGCCAAAATCTA	ref_1269_fdr	53	36	54	58	27	45	30	46	40	45
TCCCGGAGTGGTGGAG	ref_1269_fdr	169	147	222	219	175	180	154	188	155	158
TTCTGAACTTTAGCTG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CATTGAGGATAGAGGG	ref_1269_fdr	48	39	65	53	39	59	48	52	46	54
TCTGTTTACAGCATGT	ref_1269_fdr	20	10	29	27	18	35	20	28	34	26
ATCTGCGGTTGTTTTT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTATTGTACAATC	ref_1269_fdr	20	31	27	16	38	25	37	23	33	13
CGTTATCTATTTCCGG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTGATCATTTTCCTTG	ref_1269_fdr	68	33	91	75	57	81	50	62	47	54
CCTTGCTTGTCAATCC	ref_1269_fdr	5	10	18	17	9	17	14	17	13	11
TCGTTCGTAACTTTTA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGCGAAGGAACTT	ref_1269_fdr	11	12	14	24	11	23	21	18	19	26
CACCATTTCCAATCCG	ref_1269_fdr	137	87	171	152	95	117	106	129	112	106
GGATATTTACTTAACG	ref_1269_fdr	44	22	52	41	24	32	24	45	25	46
GTAATCTCGTAGTTTA	ref_1269_fdr	32	20	29	22	22	21	19	35	21	30
TAAGGGAACGCTTATG	ref_1269_fdr	18	18	23	5	16	12	15	10	19	21
TCGTGCTGTCTTTATA	ref_1269_fdr	34	27	53	59	37	37	28	43	39	42
TTCGGGTCTTCGGATG	ref_1269_fdr	15	10	14	7	10	23	10	12	9	7
CTCACCTCCTTTGCGG	ref_1269_fdr	28	87	50	33	99	23	94	28	102	26
CTGCGCAGTCTTCACT	ref_1269_fdr	43	52	59	45	52	54	41	53	49	44
GTATAGCAGAATGCGA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ATACACGCCATCGTCT	ref_1269_fdr	49	35	37	55	42	40	51	39	37	31
AAGCCCATACAATACG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGTCATATTTAATATT	ref_1269_fdr	1	0	1	2	4	2	2	4	0	2
TATTATTCGTTCATTG	ref_1269_fdr	62	39	73	64	51	57	36	58	48	59
TCCCGCCCCCTTTTAA	ref_1269_fdr	5	3	10	13	6	6	2	7	2	6
TCCTAATCGGGTTTCA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TAATCCCGACTATCTC	ref_1269_fdr	35	35	39	42	47	38	53	29	49	29
GCATTAGTTAGCATAA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTTCAGAGGGCTT	ref_1269_fdr	83	55	110	84	59	89	58	76	64	81
AAACCTGCTGTCTGCG	ref_1269_fdr	15	3	11	4	1	1	3	2	7	4
CCCTTACAGACCAATT	ref_1269_fdr	12	18	21	25	25	11	22	10	18	11
CCTAGAAACTATTGTA	ref_1269_fdr	24	31	36	33	13	35	24	26	30	22
ACTTTGATTCCAGTAC	ref_1269_fdr	104	70	147	117	60	113	79	102	89	94
GGCGCAATGGGCCCCT	ref_1269_fdr	31	28	58	56	27	33	28	44	34	35
GCCTCTACTTTAACTT	ref_1269_fdr	23	16	15	12	10	12	20	25	25	16
CGAGTTTGGCTTACAG	ref_1269_fdr	126	76	153	107	63	126	70	128	86	124
CTTTATTATCAAGCGG	ref_1269_fdr	99	61	104	83	50	90	66	98	81	79
GACAGTGTTTAGAACA	ref_1269_fdr	32	21	25	26	20	21	17	27	13	26
CCACGTACCTGTCCGA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TATCCATTATGTTTGA	ref_1269_fdr	47	39	71	47	28	40	43	53	27	37
AGTGTGAAGCTGCGGC	ref_1269_fdr	8	9	17	16	9	9	10	15	13	4
ACACGTTATGGGTTGT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GACCAACACGGGGTCT	ref_1269_fdr	48	31	47	43	36	43	41	45	48	28
CTTGAGAGCCTGAAGT	ref_1269_fdr	60	36	65	52	48	49	51	57	52	41
CATTTTAAAAAGCTTG	ref_1269_fdr	16	8	11	14	12	11	16	15	6	14
TCTGGTTCACGCTTTC	ref_1269_fdr	130	101	168	130	69	119	101	108	87	103
ACGAGCGAGAGTGGGT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ATGGATTCCTCCCGAT	ref_1269_fdr	9	11	13	22	9	19	10	4	10	7
TGGCGTTCACCCATCG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGAGAATCTTCAGAAA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTCTATGCTCGCA	ref_1269_fdr	75	71	79	74	61	83	66	80	60	83
CAGTGCACTCATTGTA	ref_1269_fdr	13	17	18	11	25	12	15	12	15	17
TAGCTGGACCAACAAG	ref_1269_fdr	70	42	90	77	33	58	38	71	47	62
TCATTTGTCTGTGGAC	ref_1269_fdr	10	10	12	12	5	7	15	8	7	11
AAGCTATCCTAATAAG	ref_1269_fdr	46	49	76	54	35	62	57	55	57	55
TTCTGTGGCAAAGTGA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ACTAAATTGAGACCTG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTTTCTGTCGTAT	ref_1269_fdr	12	4	8	11	6	6	8	9	13	12
AGAGAGTTGTCTTCTA	ref_1269_fdr	51	39	61	61	41	30	44	50	51	36
GGTTCGATCACATGAT	ref_1269_fdr	20	24	29	23	13	27	19	27	20	12
TTTTCAGTTCATCAGG	ref_1269_fdr	32	24	39	41	15	36	13	18	27	32
CCGCGGGGGTTGAATA	ref_1269_fdr	2	9	8	2	17	5	8	5	14	3
GTCTTAACATGGGATT	ref_1269_fdr	52	29	59	43	45	47	40	57	39	45
GGTCTGGGCTTCCTTG	ref_1269_fdr	26	10	36	18	19	23	14	17	12	23
AGATTTTTAGCTTACT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AATTAGTCCATGCTCC	ref_1269_fdr	25	61	23	26	66	17	55	19	69	24
TGTGATAGTTCTTTGC	ref_1269_fdr	13	7	9	10	6	3	5	5	6	3
CACTGGTAATGCTACC	ref_1269_fdr	23	8	32	20	20	20	9	17	12	11
CTATTCTATTTATCAG	ref_1269_fdr	13	11	7	5	8	11	12	11	12	7
TTTGTGTAAGCGCATT	ref_1269_fdr	64	63	92	93	50	84	69	73	71	55
GACATTAATGGCATTT	ref_1269_fdr	4	2	7	4	1	4	2	4	1	2
GCTTCTTGCATACGTT	ref_1269_fdr	3	7	11	6	11	8	12	9	9	4
CTCGCCTGAACCCGCG	ref_1269_fdr	15	13	16	14	10	14	7	7	9	6
TGATTGATTACTAACT	ref_1269_fdr	12	9	11	15	5	11	12	18	13	9
CTCTTTCCAATATTAT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATCGTAAGTTGT	ref_1269_fdr	15	9	8	16	9	4	4	10	6	6
GCCTTTTTTATCCCAT	ref_1269_fdr	56	48	83	94	41	52	44	65	42	43
ATGAGGTTACAGTGCG	ref_1269_fdr	5	8	14	6	3	6	7	10	5	8
TGATACTTCCTCCATC	ref_1269_fdr	20	16	34	23	18	14	17	19	12	20
GTGTCATTGTGTATGT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GCATATTTCGCGGTCG	ref_1269_fdr	5	8	18	11	13	14	13	18	12	14
TCGAATTTGAGGGTTC	ref_1269_fdr	98	52	84	72	46	75	51	76	48	57
CCGTTTCCGTCTTGAC	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
GCACCTAAATATGTCG	ref_1269_fdr	15	23	36	32	28	24	25	22	18	31
TCCGCTCGCAACATTG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCAACCCGCTACG	ref_1269_fdr	252	184	276	276	166	268	222	256	212	236
ACAGTTCGTATTTCTT	ref_1269_fdr	10	9	16	10	8	8	6	12	6	3
ACTGCATCAGCATATG	ref_1269_fdr	65	47	77	71	36	60	60	69	53	66
TAACAGGAAGTCGATG	ref_1269_fdr	22	26	39	25	23	28	18	19	30	15
TCGTGTTGGTAATGTT	ref_1269_fdr	52	36	60	67	38	47	38	50	44	36
ACCCGTGGAGAGAATT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCATTCGGCTCTT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTAGTACCACTC	ref_1269_fdr	8	67	12	11	68	8	62	7	67	7
GGTGAGTGGGTATAAT	ref_1269_fdr	25	23	49	39	23	43	19	31	32	31
GAAATGCTATGAACCG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGCATCATTCGT	ref_1269_fdr	3	0	3	5	0	2	1	4	3	2
GGTAAGTGTCTTAGTC	ref_1269_fdr	2	2	4	2	1	0	0	1	2	1
ATCAAACGCCGAGTTT	ref_1269_fdr	29	20	29	32	16	22	17	26	30	26
GTGAATGTGGATCCTG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTATTGGTCGTCG	ref_1269_fdr	38	30	50	31	36	35	38	40	50	40
CAGGCTATGTTTGCCA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGGAGAAGGTTAT	ref_1269_fdr	31	34	47	38	20	32	34	29	26	32
AGTTCGACTCCTTATT	ref_1269_fdr	113	89	127	111	77	100	116	87	108	88
TGGCGTAAGCCCTGTT	ref_1269_fdr	52	39	74	55	36	54	50	57	34	37
CGAGGTGTTTTGAGGC	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGTAGGTTTTCGT	ref_1269_fdr	4	2	4	4	1	2	4	3	8	3
TTTCGCATTAGCTTAC	ref_1269_fdr	15	14	20	14	17	13	19	19	19	10
GATAATGGAGCCTTAA	ref_1269_fdr	1	4	7	1	2	3	3	1	4	1
ACACGTCTCTTTTGTG	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTGGCACTTCAAT	ref_1269_fdr	130	96	129	132	103	115	92	128	96	110
GCTGGTAGGTTAATTA	ref_1269_fdr	36	35	36	40	28	35	27	38	22	38
GGGAAAGGCGGCTTCT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCCGCCTAATGAA	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTCTCAGTGGCAC	ref_1269_fdr	24	22	31	33	26	27	25	24	23	23
ATTTGTTCGTACACGG	ref_1269_fdr	11	16	12	20	9	8	12	5	13	9
GTGGGTGTGAATGATC	ref_1269_fdr	16	24	26	12	17	19	15	13	20	16
TCCGAAGGCAAATCAT	ref_1269_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCGACGCGCAGT	ref_1269_fdr	35	35	25	27	26	27	24	23	36	28
GCATATCTCCCGACAG	ref_1269_fdr	55	32	66	68	36	48	43	47	48	56
GCAAAAGGTAGGTTAG	alt_1687_RC	177	175	271	247	158	209	170	226	210	218
ATGCGCATCTAGTTGC	alt_1687_RC	45	29	60	47	20	52	34	35	31	38
TTCTCGCGACTCGAAT	alt_1687_RC	14	9	19	9	5	14	7	10	14	11
TATGCAAAGTTGGGCA	alt_1687_RC	2	6	5	4	3	7	4	2	7	11
CTACCGATCAAACTTG	alt_1687_RC	350	238	396	294	273	273	272	287	317	272
GTTCGGAGCTGTAACG	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
ACCCTTATAGTATGTT	alt_1687_RC	13	10	7	16	9	7	5	13	9	11
ACTTGGATATCTATCC	alt_1687_RC	1	0	0	2	0	0	0	6	2	3
CTGCCCATCTTGTGAA	alt_1687_RC	5	7	5	5	4	3	10	2	8	1
GGAATCTGTCATTTAA	alt_1687_RC	81	77	108	109	60	83	75	97	77	107
ACCTTGTATTGCGGCA	alt_1687_RC	26	6	43	38	24	27	27	27	14	19
CGCCGGTTTCGAGCGT	alt_1687_RC	24	25	53	52	31	40	29	58	18	30
CCCAGCAGCTTGCGTG	alt_1687_RC	6	2	6	7	6	1	3	3	2	5
GCCTTATATTCGGCAA	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
TCGTAGAAATCCATCT	alt_1687_RC	95	84	98	118	72	75	89	89	83	74
TTTTCTGAGGCCACCT	alt_1687_RC	29	20	28	39	12	49	13	33	24	29
TTGTGGACCTTAATCA	alt_1687_RC	60	66	62	70	42	58	59	60	66	67
TCCCCGGGTGTGATAC	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
GCTAGCCACACTATAG	alt_1687_RC	28	24	49	33	24	31	35	23	37	22
TCAGCAACCCACGTGT	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
TTTTTAGTATCTTCTT	ref_1687_RC	24	15	19	22	14	15	27	14	10	14
AGTGATTTATCCTCCA	alt_1687_RC	72	43	105	79	47	82	54	66	50	78
GTGCATTGTGCTGATT	alt_1687_RC	38	20	57	55	23	34	23	43	33	34
TACGGTAACGTAAAAC	alt_1687_RC	10	3	14	18	10	8	7	18	6	15
TACCGGGATCGGTCTG	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
GACGCATTGTCGCAAG	alt_1687_RC	21	16	43	23	21	27	18	19	17	13
CTAGGGTAGGCTATTT	alt_1687_RC	12	5	10	6	9	10	9	19	5	7
GAACCTGAACGGTTGC	alt_1687_RC	21	18	21	26	9	24	21	15	12	27
GTCGTCTGTACTCTCT	alt_1687_RC	34	13	46	24	27	26	14	30	30	27
TTCGGGCTTTTTACAT	alt_1687_RC	86	51	77	73	49	59	45	71	52	61
ATTGGTCCTTACTCTC	alt_1687_RC	79	49	97	99	49	67	48	64	51	60
CGATTTAATCGGCATT	alt_1687_RC	44	40	53	44	18	26	29	40	19	29
AGGTATTGCTGGATGA	alt_1687_RC	39	15	35	32	11	48	14	29	16	24
GGTGCTACTGAATTAC	alt_1687_RC	31	18	46	31	11	20	18	25	24	26
CCACGCTTGGTCCGGC	alt_1687_RC	193	85	229	211	96	199	79	171	110	163
GGTGCGGTACCTGTGT	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
ACCTTCCGGCTGAGAG	alt_1687_RC	303	178	308	307	166	262	175	212	185	261
AGTGAATACGCTCAGT	alt_1687_RC	88	44	91	79	42	53	61	77	38	54
AATTGCATCTTCACCT	alt_1687_RC	26	10	28	35	10	30	9	20	20	31
GCATACTATGCTTATT	alt_1687_RC	16	9	21	18	5	16	11	20	11	19
GTAATCTAGTTCTCCA	alt_1687_RC	15	9	25	24	17	36	7	17	20	20
GAATGTAGTATGGATC	alt_1687_RC	37	25	38	34	20	37	16	45	15	43
TGCTGTACGATTGATC	alt_1687_RC	37	30	70	50	37	44	34	55	27	46
CGTTGTTAGTGCGGCG	alt_1687_RC	32	13	31	33	14	25	17	19	15	21
TTTTACCTGTCGCGAT	alt_1687_RC	29	32	48	37	18	33	27	36	34	29
AGCGGGTTCCTTGATC	alt_1687_RC	222	135	245	193	127	172	134	174	144	170
ACGAAACGGTTTCGAG	alt_1687_RC	7	12	8	13	14	10	13	7	8	10
CCGCGTATATTCACGG	alt_1687_RC	27	6	20	13	9	9	7	15	10	18
ATTAGCCAAGATTCTA	alt_1687_RC	57	27	62	54	34	37	31	53	34	43
GGGTTTCCCCCCGTCA	alt_1687_RC	15	47	15	24	48	20	48	17	51	12
GCAGTACGGGTGCTAA	alt_1687_RC	34	22	43	46	23	40	22	41	24	33
AGGTGCCATGCTTGTT	alt_1687_RC	31	21	46	38	23	28	29	28	34	39
AACATCTCCGTATGGT	alt_1687_RC	27	19	31	26	19	26	10	29	16	22
CCTCAGATGTTTTGGC	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
GACGATTTCTGTGCTT	alt_1687_RC	152	90	170	167	93	129	105	118	105	138
TAGTTAACTGCCATTA	alt_1687_RC	50	22	54	75	21	38	27	45	29	41
GCTCGATGGAGCATGT	alt_1687_RC	10	8	14	14	6	10	10	12	4	12
GCATACCATAAGCGCG	alt_1687_RC	88	48	112	92	45	80	56	84	54	74
TAACTGGCCACTTAAT	alt_1687_RC	15	13	36	22	22	21	23	17	25	13
CACCTTCAGTGGTAGT	alt_1687_RC	45	33	52	45	20	39	26	25	17	26
GTGTGACCTCATACAG	alt_1687_RC	61	44	92	65	38	65	51	38	57	65
CGGGAATAATTTCAGT	alt_1687_RC	32	15	32	28	20	28	11	22	6	24
TCCGTGTCCGGATCAG	alt_1687_RC	56	42	115	83	50	51	47	91	50	55
GGCTGACTTAGGACAA	alt_1687_RC	65	38	87	72	45	41	41	51	29	64
GATTGCAAATCCCCCG	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
ACTGACCAACGGGGGG	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
ACCAAATTGGACGGGG	alt_1687_RC	0	0	0	0	0	0	0	0	0	0
TGTTGTTGCTACTGAA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTCACAGATGTTCGTT	alt_2009_fdr	6	6	7	4	7	6	7	3	8	7
GATCGTTTGGTACTTG	alt_2009_fdr	21	41	45	29	41	27	46	19	46	26
GGTGCTCATTATTCAA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCGGGAAAGAAGG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGCTCCATTTCCT	alt_2009_fdr	20	25	36	24	31	24	16	31	34	18
ACACGGTACTCACGCG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTATTCCGGACCG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TGATGGGTTACTGCTT	alt_2009_fdr	56	75	61	62	53	52	106	55	95	43
TCATTTCACCGGACCC	alt_2009_fdr	15	36	35	21	28	16	40	13	40	20
TGATTGTGTGAGATTA	alt_2009_fdr	4	4	1	5	4	3	2	0	6	2
GCCCTTTTACGACGGT	alt_2009_fdr	37	49	36	36	44	34	48	26	43	19
GGCCAACCGTTCAGAA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGTTACTACCAGT	alt_2009_fdr	39	43	37	25	34	19	41	17	49	27
TGGTTCTCCGTGGTTG	alt_2009_fdr	26	44	45	36	42	36	55	33	44	41
CCCTTTACAGTTCTGA	alt_2009_fdr	16	18	22	21	35	11	20	15	34	15
ACGTTGCCCGCCTCGG	alt_2009_fdr	34	24	24	13	30	30	29	19	33	22
ATGGTTAGTTTTAGGG	alt_2009_fdr	22	25	21	18	33	32	20	20	42	19
TGAGGCAAGATCCCGT	alt_2009_fdr	6	8	6	1	4	5	3	3	9	5
TTAGTTTTACGCGATT	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTGTACATACTAA	alt_2009_fdr	22	38	18	14	39	14	41	21	52	20
TAAGAGAGCTCCCGAG	alt_2009_fdr	44	65	42	24	60	29	72	37	82	40
GATGGCTACTCCTTGA	alt_2009_fdr	16	40	25	27	35	25	42	26	33	26
GTAAGGCCGATCCTAG	alt_2009_fdr	11	17	10	10	12	8	13	17	19	8
GCAGTCGTATTACCTC	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TCGTATCTTTACGTAG	alt_2009_fdr	21	23	30	16	21	14	16	14	21	20
AACGGTTACCGACCAA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTCTACTATGTAA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTCTCTTGGTGGG	alt_2009_fdr	8	32	10	5	22	14	22	11	35	19
AGCAACGTTCATTATT	alt_2009_fdr	36	55	39	31	45	26	48	31	57	37
TTGGCTCTCGCGATTA	alt_2009_fdr	21	31	27	24	25	15	41	16	35	22
GCGGTGGAGTGTTAGA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGAGCTGCACGAC	alt_2009_fdr	10	8	13	4	5	3	19	10	4	4
CAAGGCCCGATCCCCC	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCCCCCCTTGAGT	alt_2009_fdr	50	66	48	50	64	42	48	38	62	38
CCTGATTAGCGCGATT	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGAGTCAGTAATT	alt_2009_fdr	30	37	27	30	31	19	41	29	34	23
TCAGCAAACTGTTCTA	alt_2009_fdr	22	28	21	13	41	26	42	27	39	17
TCATAGGCCGGCGCTC	alt_2009_fdr	12	15	13	8	23	10	19	4	21	9
TTCGGGAGATTGGCAT	alt_2009_fdr	7	15	20	4	8	5	14	5	5	4
GAGCGTTTATTCGTAG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTATCGGTAATTACGC	alt_2009_fdr	16	21	21	12	13	20	19	17	19	12
CGCTTTTCCGTTTCTT	alt_2009_fdr	40	48	29	24	46	25	51	35	55	30
GGCACTAATACTTACA	alt_2009_fdr	5	23	5	8	26	4	11	12	20	4
CTGCGGCATATATTTG	alt_2009_fdr	2	11	4	4	8	4	9	4	15	6
GATGCAGACGCATACC	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCAATTTGGTTTA	alt_2009_fdr	19	30	18	24	18	11	30	26	17	12
GTCTATTTACGTATCT	alt_2009_fdr	72	93	73	69	76	80	95	45	98	58
TGCACACCATTATATT	alt_2009_fdr	2	5	4	1	1	4	2	1	9	4
CTATGGTGCGTTCACC	alt_2009_fdr	28	46	42	36	49	44	58	39	81	27
GTCCTTCATGTGTTTC	alt_2009_fdr	63	89	63	61	79	39	83	56	71	54
CGTTTACTATAAACAA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCGTGATATGTAG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTAAATCTCACGG	alt_2009_fdr	14	21	11	14	29	11	30	14	33	7
CTGGGCAATACAATCC	alt_2009_fdr	19	30	21	19	40	30	36	26	28	16
TTAGTGAGTTATCGTT	alt_2009_fdr	11	18	16	11	13	11	27	8	19	13
ACCCCTTGTTTGCCAT	alt_2009_fdr	3	33	6	7	36	1	45	5	42	4
AGATTTTTCGTTGACT	ref_2009_fdr	166	199	169	152	176	133	195	113	169	127
GGCTCTGCGCCTATTA	alt_2009_fdr	16	12	13	12	24	9	13	8	10	6
TGGATGTAGACCGTAG	alt_2009_fdr	32	44	37	24	52	21	42	33	36	38
GCGCCCCATCCTATCG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGTCGGAGATCCT	alt_2009_fdr	18	18	8	10	30	12	35	17	36	6
CGAAATGTTTCCCGGA	alt_2009_fdr	11	21	11	16	15	21	27	15	17	27
CAGCTGGAAAAAGGGT	alt_2009_fdr	37	36	37	19	37	20	52	19	60	18
ATCCGGGGCGTAGTTT	alt_2009_fdr	39	57	44	33	63	28	54	35	70	35
CGATTTTGGGGTCCCT	alt_2009_fdr	6	6	9	3	9	8	8	2	9	8
AATCGGGACCCGTGCA	alt_2009_fdr	4	14	13	5	6	10	19	8	12	11
CAGGCACGGCCCTGTG	alt_2009_fdr	28	38	23	22	38	12	27	16	40	16
CCTTTTCATCCAAATG	alt_2009_fdr	23	29	23	18	20	12	28	8	25	8
TGAAATCTATCCTCGC	alt_2009_fdr	26	49	41	27	49	31	29	16	44	21
GTTTGCTTTCCGTCTT	alt_2009_fdr	4	7	8	3	13	14	11	6	18	9
ACCCACTTGTAAGCAA	alt_2009_fdr	18	34	23	17	22	23	29	19	33	13
AGGTGGTGAACCAGGC	alt_2009_fdr	5	4	9	5	6	9	7	8	10	7
CGCTATTACTTTAAAA	alt_2009_fdr	43	90	58	45	86	44	83	52	98	35
CACTGCCATCACGTCA	alt_2009_fdr	16	54	14	18	39	19	65	15	39	15
GACTATTCGCTAGTAA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTGTCGTGTGTAT	alt_2009_fdr	4	4	8	2	6	3	7	5	5	3
GGATGTACGTCTCTCG	alt_2009_fdr	5	8	13	3	11	8	6	6	3	5
ATTTGCATGTTTGTCG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTTCATAAGTTAG	alt_2009_fdr	10	14	11	7	21	6	8	0	13	3
AGTCAAGATGTGTAGC	alt_2009_fdr	25	42	23	30	39	22	41	26	48	26
CGCGCATGATACTGAC	alt_2009_fdr	29	41	39	14	27	24	47	14	61	28
TCCAACTGTGTCCAAC	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TACGTCTAGACCAGAT	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TCGAAGTGGAACGCCC	alt_2009_fdr	48	67	60	40	81	53	69	55	93	39
TGTGTTAACTGCCTTA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCGGTATTTTAAT	alt_2009_fdr	6	13	12	6	15	12	21	6	23	10
CGTGACGCTTTTGGCG	alt_2009_fdr	14	31	31	11	44	25	32	29	41	18
ATCAAATTTCACTTTA	alt_2009_fdr	2	4	7	2	4	1	6	6	5	2
GATTCCCGCAAGGGGG	alt_2009_fdr	20	33	18	15	16	20	19	19	23	22
TCCCAGTTAGTCGCCT	alt_2009_fdr	20	31	26	24	39	23	34	23	41	24
GTATTGATGTAAATTG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
CGAAACATTTAGCGGG	alt_2009_fdr	23	33	25	18	31	21	30	19	32	19
CATATACCTATCTTGA	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
AATTGTCTTCTAAACT	ref_2009_fdr	52	52	66	60	71	55	53	63	54	55
AGGCTACTAAACTTTC	alt_2009_fdr	9	18	11	10	11	13	16	8	14	13
CGCGCGTCAAAGATTG	alt_2009_fdr	26	42	21	33	47	20	35	23	39	17
TCCAATTAAGCCGAGT	alt_2009_fdr	103	223	136	111	220	119	256	123	272	86
ACGGGTCGGTTCCCAT	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTTTATGTGACCCGTG	alt_2009_fdr	36	33	36	23	64	21	55	25	42	24
CCTTTGTCCGGCTGTC	alt_2009_fdr	0	7	3	0	2	1	2	1	11	0
ATATGGACACGTTTTC	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TCGTAGGTTGAATTTA	alt_2009_fdr	12	31	13	18	33	12	40	10	42	13
CCATTGGGCCCGCATG	alt_2009_fdr	20	25	24	31	32	26	30	24	40	18
TATGGCTTCACCGCAG	alt_2009_fdr	0	3	1	0	2	3	2	4	4	0
TCCTGTGCACCCCAAT	alt_2009_fdr	43	54	47	57	60	49	49	35	46	30
TTAGTATCACCGGTGC	alt_2009_fdr	30	25	32	21	40	20	35	30	39	20
TACTGCGTTTCGTGTA	alt_2009_fdr	9	24	15	16	17	13	14	10	20	15
TCTTTCGAAGAGTCCG	alt_2009_fdr	79	126	91	60	87	80	119	67	109	72
CTCTATTGCGCGCCCT	alt_2009_fdr	26	39	22	17	27	19	25	24	50	19
AATCTGTCTGTAGATT	alt_2009_fdr	45	71	44	41	67	57	80	44	70	49
CAGGATAATAGAAATT	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGCATGACTCTGA	alt_2009_fdr	9	17	6	10	20	6	21	8	17	2
CGGTGTTATAGAATTT	alt_2009_fdr	16	42	31	23	42	25	41	14	33	17
TTGTGTTCTTACCCGC	alt_2009_fdr	70	196	109	78	178	82	178	74	208	70
TGCTCGTTTCCCATTT	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTCACGTATTCGTACA	alt_2009_fdr	12	24	12	9	23	19	12	9	19	6
TGTGATATCCCGGCGG	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCTGAGCCCGTCT	alt_2009_fdr	4	3	4	5	7	1	4	6	4	2
ACGTTAATCCTCCAAA	alt_2009_fdr	6	9	4	7	7	11	7	4	7	6
TTCTATGTACGAGATC	alt_2009_fdr	33	55	51	45	67	34	79	22	64	28
CTGTCTAACGACTATG	alt_2009_fdr	51	58	70	45	62	54	65	39	78	42
CGCTGCGCCTATTGTG	alt_2009_fdr	0	0	0	1	0	3	0	4	1	0
ACTTTTCAATCCCCGG	alt_2009_fdr	107	279	109	103	245	87	296	101	293	98
ATATTAAGCCAGCATC	alt_2009_fdr	13	10	11	7	7	11	8	7	18	5
GAATAATTTCTATAAT	alt_2009_fdr	25	34	35	22	30	23	41	14	37	13
GGATTAATATAACTCA	alt_2009_fdr	31	43	28	33	46	30	38	31	54	22
CAGATAGACGGTACAC	alt_2009_fdr	19	22	15	19	33	4	29	8	29	11
CTTACTGGGTACCGAC	alt_2009_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCACCAAGCAACG	alt_2009_fdr	14	23	16	12	16	20	17	21	23	24
TATTGATACTTCTATC	alt_2009_fdr	12	13	8	13	11	8	14	8	10	6
TAGTTTTTCGTCAGAT	alt_2009_fdr	6	10	8	5	11	5	7	4	9	11
CCGTCGAAAATAAGCT	alt_2009_fdr	157	266	180	165	273	157	306	148	311	136
GAGACACCTCACCATT	alt_2009_fdr	63	70	35	33	70	41	75	45	74	36
TCATCAGGGGTGCTGG	alt_2009_fdr	3	13	9	6	14	4	15	3	12	12
CTCGTCCTACAACCTT	ref_2009_fdr	127	205	207	168	224	146	226	153	242	144
GTTTAGTGATTACTTG	ref_2443_negative	15	32	21	13	28	23	21	12	23	15
GGCACCTGTTCCAAGC	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
GAAAAACGTTGCGCCG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
CTCTCCCGATACCATT	ref_2443_negative	7	7	4	5	7	4	6	9	10	2
TCGCCGTAAAATACTC	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TTGCGATCTCTGGTTT	ref_2443_negative	4	12	14	11	10	7	14	8	8	4
TGTGACCCATTTCAAT	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
ACAATTGGACACGGCT	ref_2443_negative	12	15	10	6	21	6	14	13	19	7
GCCAGGAAACCCATTT	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
GATAAACGTTGCGCCG	ref_2443_negative	18	25	20	14	22	11	19	14	25	17
AATAATACGGCTCTTG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
CATCGCCTTTTGAGAC	ref_2443_negative	28	23	22	17	23	19	36	13	11	18
CTCTTATGGGCTTGGG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TTAGCGCCAGGGATTC	ref_2443_negative	49	85	51	53	80	48	96	69	90	51
GCTAGAGGGACTTGTT	ref_2443_negative	28	51	48	39	48	45	53	31	54	18
CCACCGGATATGGAGC	ref_2443_negative	5	1	2	3	7	0	7	1	3	2
CACTGTATAGTTGTAA	ref_2443_negative	6	11	6	8	18	6	24	10	12	11
GAGCGATCTATATTTC	ref_2443_negative	7	13	8	16	17	8	7	8	20	6
TATGGTTCAGGAATGA	ref_2443_negative	14	28	31	11	31	13	25	14	21	19
AATTCGCCTCAGCTTC	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TGTCTTCTCAGTTACG	ref_2443_negative	17	21	26	12	23	12	20	13	50	19
CCGGGATCGGTATAGT	ref_2443_negative	20	43	19	13	38	9	37	18	41	17
TTATACTGCGCGGGCT	ref_2443_negative	13	9	9	8	18	6	16	10	9	10
TACGGTATAGCAGACG	ref_2443_negative	22	30	25	19	23	26	26	20	31	7
ATCTAGTCATTTGATA	ref_2443_negative	9	31	20	14	27	22	34	14	36	14
TCAGTGGGATATATAG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TATGCGTCTGTGATCC	ref_2443_negative	25	35	41	24	40	26	44	17	38	35
GCTTGTTTACTATTTG	ref_2443_negative	17	38	31	22	39	27	35	27	35	13
CACAACCAGGCCTTTG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
CTGAGAGCCGTCTGTT	ref_2443_negative	43	89	48	71	89	43	100	36	89	38
TGGGTTGAATGTGCGG	ref_2443_negative	5	19	8	6	15	3	21	3	29	7
TCCAATATAAATTTTG	ref_2443_negative	15	11	21	15	21	10	16	13	16	12
AGGCTAGTCCATACGA	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
CACCTATCTAGAACAG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TCCGAATCTAAATAAG	ref_2443_negative	29	46	40	36	55	30	51	45	69	32
TCATAAATCGGGTCTA	ref_2443_negative	8	3	8	4	6	5	9	7	3	2
GTTAGATAGAAGCTAA	ref_2443_negative	3	8	8	6	1	0	2	2	1	1
AATCTTAAGTTCTGCG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TTAGCATACATCTCTC	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TACAGAGTATTACACA	ref_2443_negative	17	17	8	8	16	9	20	10	19	5
TGACTATCCTCTGGTC	ref_2443_negative	7	15	10	12	16	11	17	7	14	9
TTGTATCTATAGACTC	ref_2443_negative	10	19	12	11	9	8	27	6	20	7
TAAGTTTGCCGCAGCG	ref_2443_negative	18	26	18	16	35	13	22	11	31	14
GGATACGTGATTGTTC	ref_2443_negative	21	22	20	27	14	14	19	11	27	8
GATATTCACTTTTCTC	ref_2443_negative	113	158	143	130	144	105	154	131	156	110
TTGGTCGGCTCTATCT	ref_2443_negative	133	214	162	139	156	108	243	104	223	86
CAATTGGATACCGTGG	ref_2443_negative	26	24	29	29	26	20	27	14	36	17
CTAGGAGTTCTGTCAG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
GGTTCACACTTGTCTA	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TGCTCTACTGGTTGAT	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
CTGTTGTTGCCGAAGC	ref_2443_negative	86	117	80	71	111	96	127	75	118	74
ACATGACTTGGGACCG	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
CACTGTGTTTCTTTCA	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TTTCAACTTATCTCGA	ref_2443_negative	8	17	19	7	24	13	18	7	17	13
AGAATTTCGAATTGGC	ref_2443_negative	89	123	96	90	121	89	128	74	130	69
TCGGAGGATCGGACTC	ref_2443_negative	8	11	10	9	13	6	12	9	13	8
GAATGACACGCATTCC	ref_2443_negative	13	31	20	15	28	14	29	16	27	14
CTCTTAAGGGGTAGGT	ref_2443_negative	43	56	35	34	54	44	56	38	59	40
AGAGTTGATCGCGTTG	ref_2443_negative	70	72	73	56	89	68	78	57	76	46
TTTTCGCTTATGTGCG	ref_2443_negative	72	128	89	62	118	74	135	59	131	57
AATGTGTTATTTTACA	ref_2443_negative	3	1	2	1	6	3	4	1	3	0
TATGCGTATGTCCTCA	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
CAATGAGCATTGCAAA	ref_2443_negative	7	11	5	8	7	4	13	8	10	3
CGTACTACTCTAGTCT	ref_2443_negative	1	1	0	0	2	0	0	0	3	0
TCTCACCATAGGCAGC	ref_2443_negative	41	67	60	42	60	55	59	45	71	33
GTTGGACCTTACGATC	ref_2443_negative	16	8	11	8	16	11	9	7	14	12
CTCTTTGGTGGATCGA	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
GTTCATCAGGTAACGA	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
GCCCTTCCATCGCGAG	ref_2443_negative	53	80	52	36	79	40	81	65	72	39
GAGTTCTAAAGCAGAT	ref_2443_negative	0	0	0	0	0	0	0	0	0	0
TTCCGATACCTAGGGT	ref_3117_upstream	40	13	57	58	18	29	19	42	21	28
TAGTTATTTACTTGTA	ref_3117_upstream	268	87	326	328	102	263	104	271	113	267
ACGTCATCGGGTATGT	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGGGATCCGGTTC	ref_3117_upstream	151	72	257	223	81	172	88	183	71	165
CGCTCTATAAAACCTT	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTGAGGCTCGTGG	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
CGAAGGGCTTTCTGGC	ref_3117_upstream	34	9	40	34	8	26	5	31	15	31
GCTTTTCCATTTTGCT	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
AACATTTTTTTGTCAA	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTTATGGGCTTTC	ref_3117_upstream	204	80	217	195	71	182	97	198	74	166
AAATCGTTCTCAGCAA	ref_3117_upstream	72	25	86	93	23	58	29	57	34	56
TTGATTCGGTCTGTGC	ref_3117_upstream	136	62	181	158	58	163	56	143	51	116
TATGGGAGTTGCCTCA	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTGATTTTTGTC	ref_3117_upstream	13	2	23	18	2	14	10	12	4	10
AATCGTTCTGACCGGG	ref_3117_upstream	196	91	274	235	68	207	83	178	91	188
TTGACATAGTGAGATC	ref_3117_upstream	26	20	41	22	16	36	12	20	16	23
TGGGTAGTAGGGCTAC	ref_3117_upstream	68	27	70	78	29	70	33	76	36	52
CCAGGAACAAGGCCGT	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCCAGAATCACGT	ref_3117_upstream	71	39	93	97	49	86	55	71	28	72
GTACCCTTCCCTTCAA	ref_3117_upstream	7	8	9	10	6	6	14	4	9	6
TATAGGCGATCACCCG	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGTTTCCATTGGG	ref_3117_upstream	74	28	91	94	28	56	21	67	41	76
GAAGATTGAATTGGAA	ref_3117_upstream	214	65	252	213	78	186	80	232	68	188
GTTTGTGCCCCGCCTC	ref_3117_upstream	21	8	38	28	9	29	11	27	6	22
TCCAGCGGGCATGCTA	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
CACCTCGAAGCGTACT	ref_3117_upstream	214	66	299	237	86	204	59	200	87	177
GTATTTCTTAAAGTTT	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCCCGTCCCACTT	ref_3117_upstream	330	106	377	343	131	312	115	311	124	303
GTTCAGATTACGCTAT	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
TATATAAATACATGCC	ref_3117_upstream	92	18	91	91	13	63	25	75	28	70
CTCTCTGTTGTGTCGG	ref_3117_upstream	19	8	13	24	4	14	5	13	11	18
GTCACGGATATTTTGT	alt_3117_upstream	35	48	28	31	48	26	36	27	45	25
CGCAGTGGCACCTAAT	ref_3117_upstream	20	8	29	30	10	37	11	23	6	27
ATATCTCTTTTCTAAG	ref_3117_upstream	56	23	82	77	21	57	20	61	26	49
CATACAGAATAGAGGC	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
TATTGTCCTTCATCTG	ref_3117_upstream	149	74	189	172	59	133	55	141	67	152
CACGTGCCGCGTAATG	ref_3117_upstream	175	65	211	207	72	159	84	158	90	144
TGCTATACCAACACGT	ref_3117_upstream	50	23	62	62	15	46	26	63	27	36
TGTGTGAGTTGTCAAC	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTTTTAAGGGAAG	ref_3117_upstream	83	26	116	90	25	80	34	88	37	78
GTTCTATGCGTGCAGC	ref_3117_upstream	122	59	151	153	67	122	60	166	54	122
GTCAAAGAATCAGGCG	ref_3117_upstream	46	25	50	60	30	51	19	36	14	46
GTGGGTCGTTTTTAAG	ref_3117_upstream	86	26	92	100	33	65	34	63	30	80
GCCTCTCTTCCTCTAT	ref_3117_upstream	30	9	25	30	12	15	12	16	11	18
ATAATCTGTGTCACGG	ref_3117_upstream	28	27	53	42	17	36	20	27	17	31
ATAAGTTTGGTTCGTG	alt_3117_upstream	153	41	227	178	57	152	63	175	50	127
TTTGGGGTAGCGATGT	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTCCAAATATAAG	ref_3117_upstream	11	10	12	12	4	9	9	12	2	5
TGGTTTCCGGTCCTTA	ref_3117_upstream	220	84	221	182	78	177	82	181	82	163
TTGTACTGATCGCATT	ref_3117_upstream	72	35	95	91	37	66	22	70	33	61
CTGCTCAATCGCATTT	ref_3117_upstream	50	37	80	51	26	61	23	64	28	52
GCGTTTCGTCACTCAC	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
CGGCAGACTGGACTTT	ref_3117_upstream	108	36	129	124	45	94	32	74	48	97
GATAGGTTCGTCCGTC	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
TTGCAGGTTCCTGTCT	ref_3117_upstream	66	21	82	62	28	64	28	79	26	62
AGGCTTCTTGTGCAAC	ref_3117_upstream	49	33	55	58	17	54	25	51	29	59
GTGTAATTCATTTATG	ref_3117_upstream	213	107	247	234	85	218	97	210	85	180
AGCAATCAGACTCACT	ref_3117_upstream	264	100	365	288	112	275	90	272	114	228
TGTTGTCACGAATATT	ref_3117_upstream	9	5	11	17	2	15	3	6	5	9
CGAGTCTATAGTCTGA	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
ATATCCGATAATATAT	ref_3117_upstream	90	26	88	77	26	75	18	78	30	72
GCATCTGATACATTAT	ref_3117_upstream	44	13	58	65	21	59	20	49	18	43
GTGCCTCTTCGTCTAA	ref_3117_upstream	46	27	69	53	23	47	18	43	26	62
AACGGCGTAGAGCCCG	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
TTGAATAGGTTCGGCG	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
GACATCCGACTCCCCA	ref_3117_upstream	29	24	35	47	19	30	29	38	26	15
ATCATTACGTATCGTC	ref_3117_upstream	84	24	104	112	33	90	42	86	35	72
TTTGAAAGACCGTTCT	ref_3117_upstream	54	26	72	71	31	42	23	47	26	49
GTGAGGGCTGGCTTTC	ref_3117_upstream	102	49	108	95	39	89	47	96	44	72
ATACGGCTCACCCCTT	alt_3117_upstream	121	34	139	109	26	120	22	87	33	100
CCCCTCGTATTCCGAG	ref_3117_upstream	98	25	97	96	36	102	26	96	30	79
GGGTAACGTCCCTCTA	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTCTAACCGGTTG	ref_3117_upstream	6	7	7	12	15	8	9	3	16	10
TTACAGCCTCTGTGAT	ref_3117_upstream	35	15	38	50	9	32	13	29	13	27
CGTGAAATAAAGGTGC	ref_3117_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTCACTACGCAAT	ref_3117_upstream	315	129	323	271	134	287	128	255	132	240
ATAGCATCCCTATGCT	ref_5976_new	31	33	27	33	25	28	31	40	17	22
CTTAAGTATGACTCGC	ref_5976_new	71	78	114	80	67	67	56	73	84	81
CGTTCAAGTCAAATGT	ref_5976_new	46	49	65	44	42	53	51	47	53	48
GAGCCTAGTTGGTTAA	ref_5976_new	65	71	88	72	64	59	55	70	80	57
TTCCTGTGGAGGCTCG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
ATATCTGTTTTTTTTT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GCTTGTACTTTGTTTG	ref_5976_new	34	27	40	19	26	26	34	24	35	20
CACTGCGGGGCCTATT	ref_5976_new	45	37	55	38	35	42	32	33	33	30
GCAGAATCCCCCTCCC	ref_5976_new	3	2	2	1	1	4	1	4	1	1
ACTGGCCTTGCGAATC	ref_5976_new	97	75	132	118	82	100	75	84	91	75
ACGCCTCTTAGTATTC	ref_5976_new	0	0	0	0	0	0	0	0	0	0
AGATATAAACGACATC	ref_5976_new	39	13	43	28	25	29	18	24	24	26
TATGCTGCTTCATTAG	ref_5976_new	9	12	19	15	10	19	14	12	4	12
GATTCAGAGGGGAACT	ref_5976_new	63	60	116	90	61	63	66	71	55	73
TCTACGACTTGCTCTC	ref_5976_new	254	193	308	240	184	240	180	217	181	186
GTAGAGCGAAGGCGTG	ref_5976_new	124	90	179	145	104	115	110	105	107	99
GTGGCGTCTATCATAC	ref_5976_new	97	71	150	83	102	85	86	77	88	73
CTGTCATTAGAAGAGT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
ATGGCAGGACGCCGTG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TTGTCCTGCGCCCGCC	ref_5976_new	70	45	68	60	34	68	49	61	38	49
GGATCGATTCGTGTTG	ref_5976_new	25	13	40	24	22	22	28	32	17	26
ATCTTTACTGTGGAAA	ref_5976_new	226	150	254	208	169	179	176	201	158	169
TTGGGGCGCATTTCTA	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GAGGGGCGAACTACGC	ref_5976_new	50	37	78	60	44	60	42	70	40	39
GCTAACTTGACCGGAC	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TGCCTCCCGTGATAGA	ref_5976_new	19	20	34	23	12	14	17	16	21	23
GGTTATGACGCCCGGT	ref_5976_new	27	28	24	33	18	38	27	31	22	28
ATCTGGCATCTTTCCC	ref_5976_new	6	4	13	11	6	5	6	2	7	7
GCCTAGGCGGTTATAA	ref_5976_new	40	40	59	36	39	30	33	54	37	36
AGGCCCTCCAGGGCGA	ref_5976_new	40	24	42	30	14	40	33	21	41	40
TTGATCTAACCGAATC	ref_5976_new	5	11	4	4	10	5	4	9	6	12
ACATTCTCAGATCGAT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TCAGGGCCATTTTAAA	ref_5976_new	16	6	10	9	8	23	8	10	11	10
CTGTATGGTCGCACGC	ref_5976_new	16	12	18	7	7	14	8	12	12	15
CCGGCATTTAAAGAGC	ref_5976_new	9	16	14	8	7	11	9	17	17	14
TCTAATCATCTCGGTT	ref_5976_new	13	11	13	14	5	7	9	12	8	12
GTGATACCTTGGTATT	ref_5976_new	60	49	93	69	44	53	42	42	53	51
AGACTTAGATTTTGTT	ref_5976_new	39	24	60	42	28	41	25	37	44	41
TCTTCTCCACACGGCG	ref_5976_new	120	112	151	160	103	105	98	137	127	143
GGTCTATCCTTAGGCG	ref_5976_new	31	19	33	34	28	21	20	17	17	18
AGGGCTAATGTACAAG	ref_5976_new	103	49	109	97	54	104	64	97	52	83
TAGTCCGCGTATCCTA	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GTGCACTGAAATTATT	ref_5976_new	17	10	21	18	10	18	14	16	16	19
GGGACGGTTCTCGTGG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
ATTATCAGGTAGTTAT	ref_5976_new	375	280	532	408	297	353	303	394	310	309
TCTAGTAGACGCATTA	ref_5976_new	4	2	4	3	4	5	3	5	4	0
GATTACTTTTACAGTC	ref_5976_new	60	42	51	66	48	52	51	56	39	54
GATTGGCGGACCAGGC	ref_5976_new	20	4	15	11	11	10	12	14	10	20
AGGGCCATGTTTCTAT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GCGTGTCTTTGGTTAA	ref_5976_new	55	44	67	57	49	49	58	51	62	47
CTCGGTTGACATCCTT	ref_5976_new	11	17	19	21	25	13	25	31	19	14
AACCGCCGGTCTGGAG	ref_5976_new	8	10	13	3	9	6	11	10	11	7
GGTACGTTTGGGAAGA	ref_5976_new	47	29	46	28	33	28	29	41	22	35
ACATGTATTAGCCTCT	ref_5976_new	39	17	22	39	20	21	35	29	29	27
CGCACTTGTCTGCCTT	ref_5976_new	26	31	25	24	22	26	16	30	28	21
ATGTCCTATGTCTAAA	ref_5976_new	33	21	49	48	29	47	36	49	39	44
TGCGATACGCTCGTAG	ref_5976_new	28	26	33	38	38	43	37	33	25	24
AGCCGGGCAGCCAGGT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
CCTAGCCAATCAAGTG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
ATATCTGTTTTTTTTG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TCAATTAAAGCGATCT	ref_5976_new	115	55	134	96	61	108	72	110	69	73
GTATTTGGTTTTTCGT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
CTGCCTTTGGGCTCTT	ref_5976_new	91	49	92	86	70	77	54	80	60	75
TATCGTTTAACTCTTC	ref_5976_new	34	29	57	41	24	38	23	41	31	28
GTTTCCGTAGGCTTCG	ref_5976_new	25	36	33	34	14	39	34	30	21	22
CTTCTACCGTTGGGAC	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GCGCCGGACTCGACTA	ref_5976_new	3	4	2	1	3	4	1	3	4	3
AGTGGACTCGCTAAGG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
CCAAGACTTTCAATGA	ref_5976_new	27	27	21	21	22	26	19	20	26	14
CTTCGTTCTTTAAGTT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GGCACTCTTAATGTTA	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TTCGCCCGGGCTCTAA	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GAGTACTGAAGGGGCG	ref_5976_new	52	42	54	47	43	44	42	53	40	49
TTTGCATTCTTACGAC	ref_5976_new	176	102	213	180	136	186	127	176	130	172
CTTCACTCCGGTATTT	ref_5976_new	35	44	53	48	41	31	40	43	50	37
TGAAGAACGAGGTGGT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TCACCACCTTATCATG	ref_5976_new	44	33	59	58	40	37	47	30	29	33
TCGGCTGCGGTAGTTG	ref_5976_new	22	30	40	30	22	29	15	26	26	26
TTGGTAGTCTGGTTAA	ref_5976_new	11	10	9	9	10	15	12	8	12	8
GCTGCGCTTATGCAAC	ref_5976_new	247	159	274	225	197	214	185	206	184	209
CCACCGTGCCCAATCA	ref_5976_new	40	32	60	59	32	46	35	58	45	50
GTTCTATCGAATTGCG	ref_5976_new	23	14	19	22	15	32	22	28	29	20
CCGTCTAACCAGGATA	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TTGGAATTAGCATGCG	ref_5976_new	33	29	48	23	35	35	24	36	22	41
TTTTTCACATCCGTCA	ref_5976_new	39	29	35	32	23	24	34	35	32	35
AAGAGCGGGTTTGTAC	ref_5976_new	0	0	0	0	0	0	0	0	0	0
CTTACGAATGGTCACG	ref_5976_new	65	40	66	51	44	67	56	46	73	45
GCGCAGTTCCTTGTGA	ref_5976_new	16	7	14	10	6	5	5	9	7	8
GATTTTCAAGTGCGCT	ref_5976_new	23	19	26	11	28	22	17	27	16	16
CAGGAGGTTGTCGGCG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GGTCTCTCTTGCAGCC	ref_5976_new	29	13	31	17	14	28	20	30	21	28
GTTTAAATGACGCATT	ref_5976_new	23	12	28	21	10	10	26	24	23	14
GAGAGCTTCCTATTTG	ref_5976_new	23	25	36	14	10	20	9	24	23	18
GGATTAAAGCTAGCCA	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GAGTTCACCAATTTTA	ref_5976_new	23	14	22	15	17	15	20	27	21	23
TTAGGCATACTTCGTC	ref_5976_new	51	33	62	48	40	31	30	27	31	38
GTTCGTCTCCAGCAAA	ref_5976_new	78	70	80	80	45	82	77	64	55	74
GGGAGCCTATCAACAG	ref_5976_new	111	82	124	131	113	114	84	126	84	99
GACCCCTATGGGATCG	ref_5976_new	160	115	184	181	114	163	142	168	151	163
TCCTATTGACAGTGTT	ref_5976_new	247	265	255	228	305	206	297	221	251	221
TGCTTTTCTGCTTGTA	alt_5976_new	290	197	355	311	226	263	206	263	176	237
ATTCGCATTTTGCGTT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
CACACTTCGAAACCTT	ref_5976_new	26	17	36	31	30	27	22	24	23	22
AAACTTTAAATTCCCC	ref_5976_new	0	0	0	0	0	0	0	0	0	0
AACCCTCGCACATTGC	ref_5976_new	0	0	0	0	0	0	0	0	0	0
AACCTACCCCTATTGT	ref_5976_new	4	6	6	2	3	3	5	3	1	4
CGGCCACTCGCCGGAG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TCGATGAGAGTAGTCA	ref_5976_new	1	3	2	5	2	1	5	1	3	1
CTCAATCTTTCTGCAC	ref_5976_new	7	13	12	14	11	16	11	10	6	12
CCGCCTGTTGGCGCAC	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TGCCCCACTCTATCGT	ref_5976_new	27	29	42	28	22	23	27	18	27	21
GACCACGCTTGATTGA	ref_5976_new	36	32	34	21	25	21	36	26	37	26
GAAGACCGGTGAAGAG	ref_5976_new	97	51	99	75	62	89	47	84	50	62
CGGGAGGGCGTTCCGA	ref_5976_new	17	19	41	29	11	21	24	14	20	15
TTTACACTTGGTGTCG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
TTAGCCTTCTGACGTG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
ATGTAACGTCAAATCA	ref_5976_new	53	59	78	73	48	60	57	61	61	46
CGTCCACGGGCGTGCT	ref_5976_new	10	16	22	13	13	9	8	18	17	18
GGCAATGCCGTTGCCT	ref_5976_new	51	37	50	36	25	44	31	38	36	38
TGGCAACTCTATGCTG	ref_5976_new	16	18	22	43	25	26	22	26	29	37
GAAAAACCAACGCACC	ref_5976_new	73	64	87	76	44	83	47	73	59	63
CGACCCACCGAAAAGT	ref_5976_new	0	0	0	0	0	0	0	0	0	0
CGGATAATTCTACTAT	ref_5976_new	31	28	37	30	30	24	20	32	33	26
TTTATCCTCCGCTCTA	ref_5976_new	0	0	0	0	0	0	0	0	0	0
GGAACTGGGGTATCTG	ref_5976_new	12	15	30	17	9	22	13	27	22	15
TTCGATTCAGGTCTAG	ref_5976_new	0	0	0	0	0	0	0	0	0	0
CTGCAAAGACCTCTCT	ref_5839_new	31	23	28	20	41	15	20	21	26	23
GTGTCTAGAACAGTTG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TTTCAACCAGCTTCAT	ref_5839_new	75	54	71	62	66	46	58	65	53	57
GGGAATCGGTAGGCCA	ref_5839_new	40	45	63	45	41	56	53	51	63	37
TCGACAAGCATAACTT	ref_5839_new	105	54	123	106	103	84	96	91	80	76
GCCGGGGACGCAGCCT	ref_5839_new	9	3	19	13	10	15	12	14	13	14
TGGGGGCTTATTCTGA	ref_5839_new	10	14	19	17	20	23	23	25	16	18
TGGACATGGTGTGCCT	ref_5839_new	0	0	0	0	0	0	0	0	0	0
ACTTGCCCGGCAATTT	ref_5839_new	78	78	114	97	93	87	89	76	87	77
TGGATGTTTGGTAGCA	ref_5839_new	24	32	36	31	23	25	44	30	36	21
TGGTGTTTCTGCTATG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TTATGTAATTAATAGT	ref_5839_new	20	23	26	23	19	18	15	32	36	19
TCTTACTTCACCTTAG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
GATTTGTTCTCAACAT	ref_5839_new	8	9	7	4	6	8	9	6	6	8
CTTTACGTTGCCGTTT	ref_5839_new	0	0	0	0	0	0	0	0	0	0
CCCCTCCCAGAATTCT	ref_5839_new	24	17	34	30	16	15	19	19	21	23
ACGGCCTGGCAATGCG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
ATTTTTACAAGGAAGA	ref_5839_new	141	93	131	129	113	141	120	110	111	129
CTCCTATAAAGTTGAT	ref_5839_new	27	14	29	32	21	23	24	19	29	19
TCATTAAGACTATCTT	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TACGCTTCTAAGCAGA	ref_5839_new	63	51	70	51	60	48	67	48	54	57
CAGCACTAGGGCCAGA	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TCACACTCATCGCATT	ref_5839_new	30	49	46	33	53	38	47	39	44	26
GCCTTGGCATTCCAGG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TGTGGTTGGCTTTGTA	ref_5839_new	22	35	15	13	12	16	17	11	22	16
ATGATTCGATATGATG	ref_5839_new	14	21	34	27	23	27	21	22	24	11
GGAGTCGATTATCGCT	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TCATTTGCACGGGAGC	ref_5839_new	40	56	48	59	58	38	52	60	63	38
GCCATGAGACCTGACG	ref_5839_new	126	104	193	149	141	138	117	135	157	150
GTGTCACGGGTACCAG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
ATTCTAGAGTTCAGCG	ref_5839_new	6	17	15	22	23	13	19	11	15	10
GCTGGTGTGGGGGGCG	ref_5839_new	36	30	51	36	44	31	35	28	35	39
GAGCTAGCGTACTTAC	ref_5839_new	0	0	0	0	0	0	0	0	0	0
GCTTATCCCAATGAGT	ref_5839_new	39	44	43	37	41	32	32	26	33	29
TACGTCAATCAGTCGG	ref_5839_new	5	9	11	9	8	6	9	8	6	4
GACCGCGTTTTGGCGA	ref_5839_new	194	169	238	186	170	222	207	183	202	158
GCTACATTACCGCGTA	ref_5839_new	119	142	166	171	184	118	162	118	169	133
TCGTTCAGGTTTGTCG	ref_5839_new	72	60	63	56	58	53	48	55	67	55
ACGGTTTTTATTTACG	ref_5839_new	20	32	43	27	20	27	32	20	23	20
TGGTGGATATAGACCG	ref_5839_new	137	113	128	127	113	132	106	107	116	94
TTCCCCGTCCCTCTTG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
GAGTTTTACGCCATTG	ref_5839_new	48	48	64	53	57	40	57	38	52	49
AATCTTGGCCTCAAGG	ref_5839_new	6	7	12	5	4	3	4	7	9	10
TCTGTAACCCCATCTG	ref_5839_new	9	4	8	11	4	5	10	5	2	8
AATTCTTAGTTCGGAC	ref_5839_new	11	13	22	12	24	9	12	12	21	10
TGATGTCAAATTTGTT	ref_5839_new	98	97	93	84	76	74	90	82	99	71
CTTGTGGTGTAGTTCT	ref_5839_new	17	18	22	15	21	14	17	12	15	12
GGTAACTGCTAAGGAT	ref_5839_new	88	96	107	89	78	102	90	93	103	75
AACCCTGAAGTATGCT	ref_5839_new	39	29	68	59	31	41	48	46	42	28
GACGTCAGTATCTTGG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TCTATCCAGCGGTTTT	ref_5839_new	73	90	69	94	65	65	86	83	88	69
AGGATTGAGGCGATCA	ref_5839_new	62	66	88	77	62	79	50	72	75	58
GTTAAAGGCCTCGGGC	ref_5839_new	193	166	229	196	163	177	184	168	174	130
AGGTCATGTTTTGCTA	ref_5839_new	20	42	30	45	46	29	44	42	29	33
GCTTGTTTTTTACGTG	ref_5839_new	65	53	72	64	70	41	50	50	66	40
GTGTAAGATGTGCGAT	ref_5839_new	35	60	62	53	60	33	51	62	69	57
ACGATTCTATTCATTG	ref_5839_new	37	31	47	38	31	33	35	29	35	36
GAATGTAACTTATCTT	ref_5839_new	40	39	38	37	40	25	41	38	42	38
CCTTTTAGCTGTCTTC	ref_5839_new	0	0	0	0	0	0	0	0	0	0
CCTCACCTCTGACACG	ref_5839_new	47	74	39	54	61	48	65	44	72	28
GTGCTTTATTTTCAAT	ref_5839_new	55	63	64	51	69	72	51	38	58	52
CTGGACTCGTAGAGTC	ref_5839_new	14	9	9	10	7	13	13	15	17	12
CTCTTTAAGATGCCAG	ref_5839_new	12	12	14	12	18	13	17	6	14	16
GAATCGTAGCTGCCGT	ref_5839_new	79	89	112	84	79	88	95	92	110	88
CGATAACCGCCCATTG	ref_5839_new	165	169	200	153	204	156	165	149	183	134
CCATACTTCGTTATGT	ref_5839_new	37	48	43	56	37	34	44	31	62	42
GGTTGGCCTTAGCATA	ref_5839_new	11	17	13	12	15	13	13	8	7	10
ACTAGGATCAATCGGT	ref_5839_new	14	24	24	16	27	25	33	15	20	16
TGGCCCCCTTGTTTGA	ref_5839_new	111	106	136	114	93	112	98	87	105	98
CAGGCATTCTTGCCTA	ref_5839_new	37	40	41	33	42	29	39	37	46	28
AGGTGAGGCAAGTGGG	ref_5839_new	41	49	43	43	52	33	40	29	48	33
AAAAGACGGCTGCAAT	ref_5839_new	61	65	90	69	46	69	56	63	66	56
AACCGCTGCTCAACGT	ref_5839_new	58	62	77	68	53	51	68	64	58	58
ATGGGTGCCTAACTGC	ref_5839_new	0	0	0	0	0	0	0	0	0	0
CTTCGCGGTATGCGTT	ref_5839_new	9	7	6	9	9	12	7	4	3	4
TACAGAGCGCCCTTTA	ref_5839_new	12	12	9	16	10	14	9	10	17	9
TCATAATCGAATTTGT	ref_5839_new	0	0	0	0	0	0	0	0	0	0
GAGACAGCATTAGTTC	ref_5839_new	146	143	185	143	157	150	196	148	155	132
GTATAAAGAATGCCAG	ref_5839_new	11	9	7	9	13	17	10	15	7	9
TGGGTAACGCTTGTTC	ref_5839_new	25	29	34	23	31	11	26	16	14	20
ACCTCCATCCTTCCTG	ref_5839_new	16	24	22	18	16	10	9	11	18	9
TTGTAGCCTATTATTC	ref_5839_new	0	0	0	0	0	0	0	0	0	0
TTGTCTATACTCTTTT	ref_5839_new	10	8	8	8	10	8	4	4	4	5
ATTTGGGCTGTTGCCA	ref_5839_new	6	8	15	4	7	7	6	6	9	8
GCTTAATTTTAGTTGT	ref_5839_new	11	13	20	17	13	11	7	11	12	13
GCTATCTCTGAGTGGC	ref_5839_new	22	33	24	19	25	24	25	32	31	15
TATGTAGGTAGTAGTA	ref_5839_new	0	0	0	0	0	0	0	0	0	0
AAACCGCGGTAAATTA	ref_5839_new	7	5	11	7	7	11	3	4	10	8
TGTTCTACCATACAAC	ref_5839_new	7	4	8	10	3	0	5	6	6	3
GCTGCGTCAGGTCACA	ref_5839_new	118	143	147	114	139	149	136	117	144	112
GTCCTTGGGAACATTC	ref_5839_new	11	17	26	10	18	19	20	14	17	13
CCCCGCCTGGGTTGCG	ref_5839_new	0	0	0	0	0	0	0	0	0	0
CAGATTGCACGCCGGC	ref_5839_new	15	15	17	23	18	15	19	9	13	18
CAGCTTACACTAAACA	ref_5839_new	7	3	6	3	3	7	10	4	7	2
GTACTGATTGTCTCTC	alt_6010_new	0	0	0	0	0	0	0	0	0	0
CCCGACGCAGGGTCGG	alt_6010_new	18	9	24	20	8	18	13	10	19	16
GCTATCTATTTTTAGC	alt_6010_new	66	44	80	78	51	49	45	54	58	65
CTGAGGGGTCTGTGTC	alt_6010_new	384	225	451	396	265	325	275	339	300	372
CGTCTAGCTTATTAAG	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TTATCTCGCTTCCGAT	alt_6010_new	55	27	70	69	36	64	21	59	52	56
ATACCAGCTGTTCATC	alt_6010_new	185	143	248	262	135	205	135	217	136	168
GTTGCTTGACTGATTA	alt_6010_new	54	45	74	68	50	54	45	56	46	49
TATCTCTAGACAGCGT	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TGTACACAACGTAAGT	alt_6010_new	131	75	198	160	94	127	84	138	95	155
GTATACTACCATTTTA	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TCGGGTCCAATACGTT	alt_6010_new	45	26	53	40	36	34	18	41	37	32
ATTCATACATCTATGG	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TACTAACAGAATACGC	alt_6010_new	0	0	0	0	0	0	0	0	0	0
CCTTGCCAACACGTTT	alt_6010_new	0	0	0	0	0	0	0	0	0	0
GGGATCATCCTTGGTG	alt_6010_new	0	0	0	0	0	0	0	0	0	0
CACTGTTAATGTTGTC	alt_6010_new	48	35	51	53	28	58	37	49	45	36
GTGGAGAGGGAGTTCT	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TGAGTCTGCGTATCGT	alt_6010_new	123	90	128	124	89	123	77	94	63	106
TGTGTACCATTTTTCC	alt_6010_new	22	5	14	12	5	11	5	10	12	13
GGATGGACTGTTACGG	alt_6010_new	5	4	5	1	4	7	7	5	4	9
ATTAGTTAGCCGCTCG	alt_6010_new	102	101	125	107	66	85	78	90	76	87
TCGATGTATTTGCTCT	alt_6010_new	37	25	27	26	27	31	13	22	11	26
GTAGTTGCCTAGCACC	ref_6010_new	60	41	85	76	47	67	36	62	41	48
GTCAGTCCCTATTCGG	alt_6010_new	74	74	98	100	56	73	57	72	70	81
GCGTGTGGTCGATATG	alt_6010_new	495	343	595	533	322	450	346	533	352	472
TTTTTTTAGTTGTTCG	alt_6010_new	15	2	8	11	6	7	6	7	11	10
ATGAATTCCCTATTTT	alt_6010_new	29	25	56	45	24	35	28	49	23	35
TTGAAACTCTAGGGCG	alt_6010_new	336	191	358	353	183	304	238	213	246	239
TGTAATAGACCCAGTT	alt_6010_new	0	0	0	0	0	0	0	0	0	0
CGGTAGCCCTTGGTAA	alt_6010_new	65	41	68	72	41	67	48	52	45	63
TTCCCTACTCTGATGT	alt_6010_new	54	59	79	77	63	54	38	48	51	55
TGACCAAGGCATGGGG	alt_6010_new	224	144	266	245	166	220	183	264	156	228
GATACTTTGCCCTTGC	alt_6010_new	112	87	165	109	90	120	78	124	87	115
CACCTGCGCGCATCTA	alt_6010_new	90	74	116	107	90	77	83	100	65	104
ATATACTTTGTGTTTT	alt_6010_new	160	61	159	166	80	133	76	159	91	132
AGTGGCCTGGGGGTTG	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TGATTCTGCTGGGCGG	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TACTTATAGGCTGTGG	alt_6010_new	52	37	69	46	46	51	29	41	36	48
TAGCGAAGAAAGGTAT	alt_6010_new	45	28	41	50	36	33	38	45	24	39
TTTTATTCTACTGAAC	alt_6010_new	109	71	113	98	83	72	71	81	73	105
AGAGATATGTTACCAA	alt_6010_new	59	38	72	69	35	58	39	67	64	55
GGCACTTTACCAGGCG	alt_6010_new	144	83	139	125	95	122	89	104	87	117
TTTTTCCTCGTGTGCA	alt_6010_new	0	0	0	0	0	0	0	0	0	0
ATGGGGTAATACGTCA	alt_6010_new	114	63	128	112	59	93	65	95	70	92
TATCGAGTGTTGCGCT	alt_6010_new	89	64	105	82	53	76	63	78	78	76
CACTTTGTTAAACTGC	alt_6010_new	29	11	32	17	15	35	16	41	17	28
CTTCAAAAGGTATGTT	alt_6010_new	52	31	63	49	35	47	28	56	31	40
AGGTATCAGCTGGCTA	alt_6010_new	58	35	92	52	37	48	48	60	33	51
TCGTAAGCTGTTCTAG	alt_6010_new	161	148	191	189	128	158	114	174	138	130
GTGCCCAGGCAACCTG	ref_6010_new	94	63	137	125	65	100	73	92	86	104
CCTTTATTGTGCGCAG	alt_6010_new	95	71	134	97	99	115	100	86	74	84
CTCTAGTTTGCGTCCG	alt_6010_new	0	0	0	0	0	0	0	0	0	0
GTTGCGACTAATGTGC	alt_6010_new	0	0	0	0	0	0	0	0	0	0
GTCCTTTACCAGGTAC	alt_6010_new	7	3	5	2	5	1	9	2	7	4
GCGGAAAAAGCCAGGT	alt_6010_new	321	196	355	332	210	278	207	341	187	260
CTTTTCCATCTTAAAT	alt_6010_new	0	0	0	0	0	0	0	0	0	0
GGGGGTCCGCTATTTG	alt_6010_new	91	45	82	64	48	79	64	68	49	75
TTTATGGGGAAAGGGA	alt_6010_new	780	403	969	921	403	789	447	746	504	716
ACCGTACTGCCATATC	alt_6010_new	52	41	85	69	44	66	69	53	40	44
TTCAACAAATTGCGGC	alt_6010_new	12	9	12	15	16	19	4	13	10	10
TCATAGGTGCTTATCC	alt_6010_new	5	17	15	12	12	5	7	15	6	10
GCTCCACGTGATTACC	alt_6010_new	182	164	211	188	137	167	197	174	184	158
GATCGATACTTCTGCT	alt_6010_new	59	26	62	55	22	46	24	41	37	38
GATCTGTCTTTAGCCA	alt_6010_new	82	68	105	84	64	70	51	62	56	71
AAGACACCTGCTGAGT	alt_6010_new	106	119	156	118	100	101	97	115	117	98
CTTTACCTTGTCCGGC	alt_6010_new	186	129	226	191	132	176	146	210	139	181
ACGCTCTAAATTGGTT	alt_6010_new	0	0	0	0	0	0	0	0	0	0
TAAATTGCGTGACCCC	alt_6010_new	177	99	203	176	109	159	108	161	113	166
TTTGATGCAGTCTTCG	alt_6010_new	135	74	145	142	69	117	63	124	70	114
GTTTAAGCTGGCAATA	alt_6010_new	60	42	82	64	57	67	53	70	65	55
TTGACGGGTGTTAGGT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TCTACCTCGCAGGTGA	alt_4000_upstream	14	26	11	11	25	15	22	7	22	12
GGATTTCTACGTGTTG	alt_4000_upstream	7	7	8	8	10	2	9	14	8	1
ACCAGATTGGATAGCA	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TCGAATACTTGGCATT	alt_4000_upstream	20	21	30	16	24	21	26	14	31	21
TGGGAATACAGAACGA	alt_4000_upstream	110	124	147	114	151	81	135	103	140	103
GGACGTAATGCAGCGT	alt_4000_upstream	94	98	124	100	106	104	108	90	121	97
TATTTGATCTGAAATT	alt_4000_upstream	55	65	45	45	51	40	50	39	50	35
TACATTCCAACATCTG	alt_4000_upstream	27	38	28	39	42	32	61	33	31	30
GCGAACCCTAACTTTG	alt_4000_upstream	13	18	25	18	16	20	21	12	19	16
TGTGCGTGCAGCAGCT	alt_4000_upstream	26	25	25	20	30	8	31	11	15	22
CACAATCCGCGAAATA	alt_4000_upstream	372	455	481	433	435	379	534	378	473	387
CCCAGTAGCTGTTCAG	alt_4000_upstream	67	77	81	67	75	48	96	47	95	52
GAATACGTCGAGTGGA	alt_4000_upstream	38	64	42	38	73	24	62	31	50	31
GAGTACGTTGGGGCTA	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCTGCTACCTTGC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
ACCTACGCAAGGACAC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGCAGTTGTCTAA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGGCAGCACCACGTCC	alt_4000_upstream	23	23	23	20	19	22	24	14	29	11
TTTTGTCCCCTCTGCC	alt_4000_upstream	26	24	23	31	35	36	47	22	34	25
GCTAGCTCCAGCACCA	alt_4000_upstream	9	3	7	11	9	6	10	5	6	4
CGTAAACTTTTGACAA	alt_4000_upstream	144	134	192	142	170	145	183	153	186	138
GGTCTATGCTCTTTGC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GACGAGGAGTATCTCT	alt_4000_upstream	13	14	5	16	15	9	6	8	9	10
TAGGGCACCGGATTTA	alt_4000_upstream	8	4	12	5	13	7	4	5	6	6
CTCCATGGTCTTACTA	alt_4000_upstream	5	12	10	11	7	6	11	1	3	15
CGTTCGAAACCTTTGG	alt_4000_upstream	63	47	82	46	49	72	53	70	51	60
ACGAACCTACAATATC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTCAGCTGTATGC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGTAAAGCCACTG	alt_4000_upstream	3	7	5	4	11	0	6	6	8	4
TCATGCAAATCAGCAG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GCCGCGAGTGATTTTA	alt_4000_upstream	110	122	118	109	151	86	156	102	143	96
ACTGCTCCACTAGCTC	alt_4000_upstream	7	12	12	15	14	5	12	4	13	6
TTTTTAACCGTATGAT	alt_4000_upstream	43	62	47	33	73	47	75	25	57	45
GGTTGGAACTAGGTTT	alt_4000_upstream	9	5	11	16	15	12	20	7	16	12
TGGTCGCTTGACCTCT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TCGAATTGCGTCGTAG	alt_4000_upstream	4	9	12	9	8	13	11	3	5	8
ACAAGTAAGCCTAATC	alt_4000_upstream	46	52	76	62	58	56	54	56	64	52
TAATAGTTAAGTGTGT	alt_4000_upstream	75	142	67	66	116	66	131	76	150	60
GCTTCTTCTGTACATC	alt_4000_upstream	26	22	48	28	54	20	33	20	36	24
CTGAATTCTGCCTCCC	alt_4000_upstream	8	26	11	15	14	12	27	9	23	10
GTTGAAGTAATGGTGG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CTACCTTAAGTCTTCA	alt_4000_upstream	3	9	2	9	3	1	6	7	7	2
TGGCGTAGGTTGATTT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGACCAGTTGGTGGCT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTAGGAAGCTGGC	ref_4000_upstream	25	46	48	24	36	30	31	30	45	16
CTCGCCACGGACTTTA	alt_4000_upstream	73	111	90	79	102	69	118	85	108	62
GCCTTCAAGTCGGTCG	alt_4000_upstream	60	69	57	39	69	45	70	50	66	76
TTTGCGAATCGTTCCG	alt_4000_upstream	30	55	46	42	74	53	50	39	57	38
TACTAGCAGTTGGTCT	alt_4000_upstream	54	73	55	38	61	48	86	43	81	40
CCCCGTGCTTTCAGGT	alt_4000_upstream	4	51	9	4	53	4	62	4	72	2
TGGCAATCCTATTTAG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CTACATTCATCTCTAA	alt_4000_upstream	30	44	32	30	48	29	38	35	48	22
TGTGACATCCACTGAG	alt_4000_upstream	58	81	86	73	102	71	82	76	102	65
CTAATTGGACAATAAC	alt_4000_upstream	31	79	61	46	71	51	69	48	75	41
CACTGGGGTAATTTCT	alt_4000_upstream	16	9	10	11	16	8	10	10	11	12
ACTTGCGAAAGGGTAT	alt_4000_upstream	7	10	8	6	17	7	26	6	30	7
GAAGCCACAGGAAGTT	alt_4000_upstream	19	30	33	25	40	29	29	26	37	26
GTCATCAATAACAATC	alt_4000_upstream	57	82	59	55	94	56	76	63	79	48
AGTCGAAGGCGTCCTC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
ACATTTGACGGGGAAC	alt_4000_upstream	18	16	24	31	20	16	37	20	41	11
CCGTTTAAAGCGCTGG	alt_4000_upstream	118	162	146	138	149	115	163	117	164	118
GTTCTACTTTACCTCA	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTTTACTCCGGCG	alt_4000_upstream	13	17	21	11	27	11	23	12	27	18
GCGCGTAAACTATTTG	alt_4000_upstream	24	40	31	24	45	27	34	24	43	27
TGAGTTATATGTTTAT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGCGGTTACGTAA	alt_4000_upstream	3	13	11	9	11	6	7	8	13	5
CGGCCTTTCCAGTGTG	alt_4000_upstream	8	20	13	17	12	11	12	14	10	7
ATCCTCTGTACCATGT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCGGTGGCTGGGC	ref_4000_upstream	62	81	86	57	88	52	68	65	84	56
TGCGGTTGTATGTAGT	alt_4000_upstream	55	75	63	53	81	53	91	42	86	48
CTAGGCTGGCGTTGCA	alt_4000_upstream	37	55	42	41	52	33	55	27	57	23
CGGAGTCTTTACGCTT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
ATGTGTGCGGAATTCC	alt_4000_upstream	8	8	14	10	8	7	11	14	8	5
GAGAGTGCTTTGGTAC	alt_4000_upstream	1	6	16	9	14	7	15	3	10	3
CGCGACAAGGAATCAC	alt_4000_upstream	4	2	4	8	9	2	8	1	4	5
AGTGGTACGATAATGA	alt_4000_upstream	39	59	54	45	56	48	71	50	74	41
TTGCGAAGCCTTTCCA	alt_4000_upstream	10	17	9	27	12	12	19	16	8	9
CACGGTTTGAGCGTGC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GATCTTTTTTCCTAAG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGAGCTCCCCTTA	alt_4000_upstream	1	10	3	3	1	6	5	5	7	0
GGCATCACAGCTGCGA	alt_4000_upstream	77	79	88	82	116	65	97	72	99	75
CCGTTATTTGGCAATC	alt_4000_upstream	24	25	26	13	24	14	21	22	33	17
CGATTACGCGATATTG	alt_4000_upstream	35	55	54	25	70	53	58	43	54	37
GGACCTCCATTGGCCA	alt_4000_upstream	11	14	18	8	14	11	22	7	6	7
GACCCGCGTGGTGAAT	alt_4000_upstream	49	46	32	35	53	45	55	31	45	40
ATATTTCATATTAACT	alt_4000_upstream	39	43	44	48	38	41	46	43	52	38
TGGACACACGCCATTC	alt_4000_upstream	129	183	165	123	167	125	168	140	151	131
CTCCTTTTGTTAGCGT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GTACAGCCTCCTCAGT	alt_4000_upstream	54	77	62	67	78	49	104	55	103	56
TCATTGTACGAGGCCC	alt_4000_upstream	16	19	20	16	14	12	19	7	22	19
CTGATTGCCCCGGGTC	alt_4000_upstream	53	88	66	57	76	48	94	45	79	43
TAGAAAGCTATACGTT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGTACACACTTACTTA	alt_4000_upstream	1	13	2	2	20	0	12	0	9	0
TCAACTTTAATGTTAA	alt_4000_upstream	27	78	49	41	56	40	67	53	64	51
AGAGTAAGTCCGGGGT	alt_4000_upstream	25	34	37	33	38	31	21	20	43	18
GACTGTACGGCGGTGG	alt_4000_upstream	11	15	11	8	20	7	11	15	19	9
ACGTGTGATTCTATTT	alt_4000_upstream	8	16	20	10	17	18	22	6	16	6
AGACCGTACTCGGATC	alt_4000_upstream	13	11	11	2	7	5	4	4	14	10
TTCCTAACTTTGAGAT	alt_4000_upstream	13	18	12	5	14	5	14	13	16	9
TTTGTATAACGGCCGA	alt_4000_upstream	46	63	62	55	69	49	68	50	80	37
GATTATTATTGGTTCG	alt_4000_upstream	50	52	47	49	40	30	61	31	69	32
ATCTTGGAAAGATCTG	alt_4000_upstream	31	47	51	36	44	36	52	35	58	32
CGGTCCCCCATCGGGC	alt_4000_upstream	19	22	15	15	15	19	16	15	23	14
CGCCGAGGTCAGATTT	alt_4000_upstream	126	149	168	121	127	125	167	113	138	137
TGGCGTACTGGTCTGC	ref_4000_upstream	92	103	131	123	143	113	110	95	147	109
TTTATTTGTGACTTGT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTCCCTCTGCGC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
ATGATTACAATCCTCC	alt_4000_upstream	2	2	4	0	0	1	3	0	0	1
TAGAATAGTTAATTTC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCAAGGGCACTCA	alt_4000_upstream	121	160	173	134	191	143	173	122	166	137
ATGGTTGCGATCTACC	alt_4000_upstream	10	9	8	6	11	8	15	10	15	7
CGCTAGTTGGCATAGA	alt_4000_upstream	70	96	79	55	76	64	85	61	107	58
GTTTCCATCCCGTTAT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
ATAAGATCTCAATTTT	alt_4000_upstream	72	63	113	49	76	47	80	43	74	58
GAATCAGCCCAGAATC	alt_4000_upstream	173	256	229	184	278	213	257	191	297	162
GTTACACTATGGTTTG	alt_4000_upstream	20	39	47	22	54	23	44	29	34	20
AGGCTTTACGTAACCG	alt_4000_upstream	15	19	21	23	29	19	31	6	30	11
ATAAAGGTCTGCCCCT	alt_4000_upstream	18	26	16	8	21	11	14	10	21	13
TTTGTATCCATTTTAG	alt_4000_upstream	73	74	103	84	100	71	108	86	104	73
TGGATTATTGCATTGT	alt_4000_upstream	0	1	0	0	0	0	3	0	1	0
GGCCTCATCACATTTG	alt_4000_upstream	48	36	29	39	50	40	45	26	46	44
CGGCCTTTCCAGTGGG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CATAATCCGTCTGCCT	alt_4000_upstream	18	53	32	16	66	16	51	19	71	16
TTTATCCGGGGCCAGC	alt_4000_upstream	8	13	5	7	5	5	15	2	8	6
AGATCAGCCTTGCGCC	ref_4000_upstream	65	91	104	94	105	72	119	81	122	63
TCCCGACGAAGATGTT	alt_4000_upstream	25	56	23	42	43	33	41	26	38	32
CCTTAATGCACTTAAA	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCGGGCAAATAAG	alt_4000_upstream	21	38	34	22	24	19	33	22	38	39
TAGCAACTCCTCAGCA	alt_4000_upstream	4	15	7	5	27	1	15	2	19	5
CAGTGCCAACGTTGCT	alt_4000_upstream	6	16	11	5	21	7	25	7	22	6
CGACCAGACCGTCAGA	alt_4000_upstream	13	11	12	19	13	12	15	9	6	8
CAATGGCAGTTTTGGT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCTGGATGGTTAA	alt_4000_upstream	55	82	48	46	63	42	91	47	76	61
GGGTGATGCCATTGTA	alt_4000_upstream	4	8	7	5	4	9	15	6	9	6
ATGACTATTGACAGGA	alt_4000_upstream	24	61	57	50	62	31	49	38	51	30
ACCTATTAGGACCCGT	alt_4000_upstream	68	82	76	51	115	41	100	58	83	66
AAAAGGCCATGGGTGG	alt_4000_upstream	1	3	2	5	4	6	3	2	3	2
ATTCTGCGCATAGGCG	alt_4000_upstream	10	6	8	8	10	6	12	13	17	7
TATGTCGTGGGATGGA	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTCAGTCCGTTCT	alt_4000_upstream	29	46	35	31	36	26	62	31	44	26
ATTAATTGAGCTGGCA	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTGGCGGTCCAG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTTATTTTGCTTG	alt_4000_upstream	15	10	21	10	8	11	13	12	8	7
ATTCTTCGAGTGCATG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTCACCTAATGTC	alt_4000_upstream	54	123	77	68	96	83	108	79	135	69
CAAGAGGGAGTGCCCA	alt_4000_upstream	34	53	41	18	64	32	53	38	69	32
ATGAAGGTCGTCCTGG	alt_4000_upstream	47	62	61	47	51	53	58	39	72	44
TAGTCTGGCACATGGC	alt_4000_upstream	3	0	3	5	2	3	5	7	5	7
ACTCTTGCCTTGGGTA	alt_4000_upstream	0	0	2	2	0	0	0	0	0	0
CGTCAAGTTCAGTTTA	alt_4000_upstream	15	20	23	19	22	9	23	23	33	17
TCAATAAAATTGATGG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCCAGCGCCGCCC	alt_4000_upstream	2	0	0	0	1	0	1	1	2	1
ATATTCCAATATTGAC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTTACAATTTTC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGGCATACTTGAA	alt_4000_upstream	12	32	27	10	35	6	33	12	41	8
TTCGAGTAGGCCTATC	alt_4000_upstream	32	33	26	31	35	39	34	23	42	26
TAGTATATGCATTGCT	ref_4000_upstream	148	174	163	146	178	118	190	115	144	145
GCTTGGTTACCCACTG	alt_4000_upstream	5	16	5	6	13	5	11	3	8	7
CGGGCCAAACCGCCGC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CTTATCCTTCATTTCC	alt_4000_upstream	10	21	15	22	18	14	10	6	22	12
CCCGTATGTTTGCCAG	alt_4000_upstream	141	201	205	183	211	170	251	138	213	168
GCGGTCATTTATTTTT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCTCCTGGACAAC	alt_4000_upstream	45	47	37	31	33	31	25	29	49	26
AGAGGGAGGTGACGAC	alt_4000_upstream	42	60	57	53	57	30	53	45	60	29
CTGTCCGTGGTACTTC	alt_4000_upstream	7	18	11	11	19	10	10	13	15	9
GATCCTTTGCGCTTAA	alt_4000_upstream	54	53	65	49	48	50	50	48	50	45
TTAGCATCTTCGTAGG	alt_4000_upstream	23	38	27	21	31	11	29	18	51	21
TAAGACCCATGACCAT	alt_4000_upstream	131	153	191	134	159	114	162	138	165	125
CCGAAAGATCGCGCGA	alt_4000_upstream	12	34	22	18	32	24	43	17	28	12
GCGAGGAAGATGAAGG	alt_4000_upstream	23	22	26	11	15	24	26	14	19	17
CTCTACTAAGGCGTAA	alt_4000_upstream	16	31	25	20	25	30	29	13	36	25
TCATAGGACTATCATG	alt_4000_upstream	16	15	24	16	30	19	30	21	24	11
TGCAGTTCCACAGCCC	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTAATGATGATCC	alt_4000_upstream	31	24	33	38	35	29	46	36	37	23
CTTCCGCCAATTAGTT	alt_4000_upstream	11	21	12	12	19	5	12	3	14	13
TACTGCGACAACTGAT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTGGTTGTCTTT	alt_4000_upstream	51	64	73	64	72	84	72	53	98	64
TCAGGTACTCAGTAAC	alt_4000_upstream	3	7	2	3	10	5	4	5	7	5
CGATGACATTCTTCAG	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGGTTTGGTTACA	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGGCAAGGCCTGT	alt_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGCTTGGTCCGGC	alt_4000_upstream	11	17	15	11	30	17	18	18	13	11
GTACCTTCTCAGCCTG	alt_4000_upstream	147	143	153	154	195	151	186	107	184	144
TCAGCCCTTTCGTTTT	alt_4000_upstream	17	13	7	12	10	7	22	4	11	6
GCAATCACTACCTTGG	alt_4000_upstream	21	23	31	19	29	17	29	32	45	23
GTTTCCATTTCGCAGG	alt_4000_upstream	52	54	60	31	45	38	40	45	58	35
TTCTCTTCTCGTTAGT	ref_3665_reverse	7	9	5	8	5	8	8	5	11	4
GTCACATAATCGAACG	ref_3665_reverse	1	9	5	4	7	5	4	2	4	2
AACTGTGAGTTTCAAA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGGCACAATCTGT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
AGCGATTAGCTTCCGT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCAATTGCTTACC	ref_3665_reverse	7	80	9	6	60	5	75	5	51	6
ACTCTTGGTACTCTCC	ref_3665_reverse	32	56	50	29	76	30	69	37	69	21
GCTTAATTCTTCTGCT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTTGCGCTCTGTT	ref_3665_reverse	53	93	87	43	103	63	101	43	104	54
TTATCTCTAAAGCCCC	ref_3665_reverse	7	14	11	7	21	14	23	18	27	15
CCTCTAACTCGAAGAT	alt_3665_reverse	34	57	34	34	60	39	44	29	47	36
CTGAGCATGTTCTACT	ref_3665_reverse	5	14	5	8	13	6	15	9	8	5
GGTTTTATCCTAGCTT	ref_3665_reverse	2	2	4	1	7	3	5	0	3	2
TTCAGGGCGAACGTCC	ref_3665_reverse	1	5	6	3	1	5	2	3	2	2
CCAAGTGGGGCCCGCG	ref_3665_reverse	17	28	30	22	33	13	26	18	22	17
ACCGTTTGAGTAACGA	ref_3665_reverse	39	75	72	55	66	43	77	44	97	43
ATGTTTTGATTGGGTC	ref_3665_reverse	11	13	5	9	12	12	13	10	17	2
CGGACCGCAGTCTATG	ref_3665_reverse	15	29	24	20	21	17	21	15	28	20
CGTGGTCGTTGAAGTT	ref_3665_reverse	11	15	24	13	21	7	29	9	12	11
TCGGTCCGGCATCCCA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
AAATTATGTTGCTACA	ref_3665_reverse	6	12	2	10	11	2	2	7	12	7
GATTTGGTTAATTGCA	ref_3665_reverse	1	6	1	3	2	1	4	0	1	1
TTCTCGAGGAATTGAA	ref_3665_reverse	8	6	7	10	12	9	9	6	7	10
GAACAGCAGCAGACTC	ref_3665_reverse	3	8	4	4	3	3	7	4	6	5
TCCTGATCGGTACAAT	ref_3665_reverse	29	39	28	25	44	27	36	25	32	16
TCATCTTACCTCGCGA	ref_3665_reverse	16	52	14	22	69	17	62	11	76	11
ACGGACATTGGAGCCA	ref_3665_reverse	19	31	12	13	33	11	32	22	35	17
CACTAACTATTTGTGT	ref_3665_reverse	22	37	21	12	22	27	41	11	50	14
CTTGCTGCCTCCCTTA	ref_3665_reverse	40	42	33	41	41	36	65	31	40	36
GTTTCGACTTGGTCGC	ref_3665_reverse	6	14	6	6	14	4	16	4	19	7
CCATTCCAATGGCTCA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCCCTCAACGCTA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGCTTTTTGCTAG	ref_3665_reverse	11	14	5	6	13	11	17	7	13	12
TGTGTGAATAAGTTTA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTAATGACTAACA	ref_3665_reverse	11	28	20	10	26	7	26	7	12	14
GTACTCCTGGTGTGAA	alt_3665_reverse	22	56	36	32	69	28	52	25	61	25
GGTTTGTCTTACTAAA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTATGTGTCCGG	ref_3665_reverse	20	35	25	19	29	17	29	15	24	20
GTGTTATCATCGTGGC	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
TATATGGGTCTGGGTC	ref_3665_reverse	1	3	1	3	0	4	1	0	3	1
TCCGAAGGAATAACCC	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGTGTATGACCGG	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGGCTGCAGGCAG	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GTACTTATTTCCTAAG	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTGCTCGTTATC	ref_3665_reverse	30	32	31	16	47	28	40	21	43	23
TACTCGAGTGGTTTTT	ref_3665_reverse	18	27	20	18	31	17	40	21	28	22
GGTATGTACCGATAAT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTAAGCCTCTCCT	ref_3665_reverse	17	23	23	18	22	21	37	12	27	22
TCACAGTATCAATTAA	ref_3665_reverse	39	49	40	34	61	29	62	33	49	31
TACATGCATTTCTCTC	alt_3665_reverse	3	1	3	4	3	0	2	0	2	0
CGTCGTCTCAGAGCGC	ref_3665_reverse	31	56	39	28	41	32	62	35	52	31
ACTGAGAGGACCGCTG	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCTTTTATATCGT	ref_3665_reverse	1	10	6	5	9	2	2	4	13	8
GTTAGCGGTTGCTAAC	ref_3665_reverse	32	68	37	40	64	33	53	26	62	34
TCAGCATAGCTAGGAG	ref_3665_reverse	4	7	1	3	4	2	3	4	5	1
AAATCGGGTGCTCCAT	ref_3665_reverse	5	28	22	5	22	12	30	10	37	18
CCTGCGTCGGTCGTGA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGTACCCCGGCCT	ref_3665_reverse	18	33	28	14	32	14	36	7	40	18
GATAGGTTCTTCCCTC	ref_3665_reverse	5	16	9	7	6	10	20	8	14	3
CGCAGCATCTGAGATC	ref_3665_reverse	5	15	8	2	7	8	23	6	16	10
CTTGGTTTGTGTTGAT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTAGGGGTCGCGG	ref_3665_reverse	1	4	3	4	4	3	4	2	7	1
TCCTGCGTCCTGTATT	ref_3665_reverse	5	8	4	4	3	3	9	1	15	6
CAAAATTAAAAATTAG	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGCCGCGACTCGC	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GCAAATTCGTTCCGTA	ref_3665_reverse	17	31	29	15	47	21	40	17	36	29
CGTTATTCCTAGCATC	ref_3665_reverse	9	37	23	25	32	16	38	11	40	14
CCCGAATTCCTCCTAT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
TCCATTATTTCAGGGT	ref_3665_reverse	13	8	10	14	18	19	19	11	17	14
CCGATTTACAGCGAGT	ref_3665_reverse	19	45	32	25	49	21	33	21	51	18
ACTGGTTTGTCTGTGT	ref_3665_reverse	2	21	7	9	14	4	12	6	17	4
TATTATTCGTTTTTTA	ref_3665_reverse	16	33	21	13	34	13	33	22	21	13
GTCTGTGCGTGCACCT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCACACGAACAGA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
AATTGTAAATCTGCAG	ref_3665_reverse	9	19	10	11	17	8	17	5	11	14
TAGTTGTGACCGGCTG	ref_3665_reverse	9	10	7	13	16	12	8	9	21	8
GGTCCCCGAGGACTAA	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTTCGATGGTGAC	ref_3665_reverse	9	11	17	10	14	3	8	6	6	8
TCCGTGGTGGTACTTC	ref_3665_reverse	8	11	14	12	7	7	12	6	20	6
TGTTCGAGTCAGTGTG	ref_3665_reverse	167	250	202	137	271	160	313	163	280	139
AGACACCGATATTGTA	ref_3665_reverse	3	17	7	12	18	13	27	9	22	6
CATATTTGGCGGTTCT	ref_3665_reverse	28	37	20	22	39	26	62	22	52	31
TTCCACTGTCTAGTTG	ref_3665_reverse	16	28	19	19	25	16	36	11	32	18
TCCACGCAAGCAACTT	ref_3665_reverse	75	141	90	61	171	64	160	67	157	51
CAGCCACGGGTGTCCA	ref_3665_reverse	0	4	0	3	8	2	4	0	9	1
CTTTTTCTAGACAAAG	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTTGGTCGCGGTC	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
GTTATGTCTCTTTTTT	ref_3665_reverse	14	19	7	18	19	13	23	5	17	19
CTCTGGAGACTTATTC	ref_3665_reverse	5	22	10	10	27	8	22	11	18	8
CAAGCCCCTGACTGGT	ref_3665_reverse	36	19	28	25	24	32	25	18	26	28
TGCGATCGTTGAGCCT	ref_3665_reverse	0	3	1	0	3	0	2	2	0	2
CGTACATTATGTGTTT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
TGACGCGCTGCTTTCA	ref_3665_reverse	33	49	41	30	39	35	46	18	47	19
TAATGTAGCTTCTACT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
ATAATTCATTTCCCGA	ref_3665_reverse	14	15	19	14	32	11	23	13	26	18
GAAAGTTGGTGTCGTC	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGTATCTTTCGAT	ref_3665_reverse	18	23	18	16	27	12	24	11	20	12
GGTAATGAATTCCGAG	ref_3665_reverse	18	26	23	11	23	15	36	12	36	19
GAGTTCAGTCCTAGAC	ref_3665_reverse	11	13	8	6	18	7	11	7	16	11
GCGACCCTTCACGGGG	ref_3665_reverse	3	26	12	4	13	7	22	11	14	6
CTGGTCGACCTGATCG	ref_3665_reverse	8	18	15	13	18	16	23	16	18	3
AAATTCATAATCCACG	ref_3665_reverse	19	22	18	12	22	15	16	13	20	23
AAAGATTAGTAACTCT	ref_3665_reverse	51	60	51	40	68	27	71	43	70	36
ATTTTCCCACCTCCGT	ref_3665_reverse	21	28	28	21	28	10	41	19	33	25
CTTGAGTCGGTCACTT	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
CACACCGTTTTGGAGC	ref_3665_reverse	0	0	0	0	0	0	0	0	0	0
TTGGAACGTACGGTCT	ref_3665_reverse	55	84	52	61	61	53	93	48	99	50
AGTGTGATCATTTTAC	ref_3665_reverse	58	91	64	59	95	45	99	46	97	41
AATCTGGTTGACTTAG	ref_3665_reverse	24	39	23	30	52	25	47	26	47	25
GTCGGCCAGGTAATCT	ref_3665_reverse	9	19	14	14	16	17	13	14	14	10
TATTGGATCTATTGCC	ref_3665_reverse	9	12	5	9	14	4	15	4	7	5
AGTCTTTGAATAAAGT	ref_3665_reverse	8	8	8	9	13	9	16	6	23	6
GGGTTTAGCGCGTCTA	alt_5668_new	10	15	13	15	25	8	18	16	19	14
TGTGCCCCCAATCGAG	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TACATATTTGGAGGTC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CTTGCTTAATATTGAA	alt_5668_new	113	181	142	134	191	118	212	126	207	107
GTTTATGGTTTTGAAC	alt_5668_new	46	70	50	41	84	38	106	50	87	40
TTGGTGTTGTGGCGCA	alt_5668_new	43	48	41	40	49	29	65	34	63	33
TGTGGGCCGCGGCACG	alt_5668_new	19	18	28	18	34	21	30	10	34	16
GTTTTCGTTTGCTTTA	alt_5668_new	2	3	5	5	8	7	9	7	5	3
GGTCAAGGACATATCC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CCGGTTCTATCCTGAC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TACGCATGTACATTTA	alt_5668_new	13	7	3	3	9	7	16	4	15	7
TTAACTCAGCGGGGGT	alt_5668_new	11	24	21	14	24	15	19	16	26	15
TAGTCCAAGACTATCT	alt_5668_new	13	16	12	17	17	11	13	17	29	14
ATCCCATCTGTAGCTT	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CTGTTTGCTGTGGACC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CATTTCAAAGGCATTT	alt_5668_new	62	66	58	53	65	46	83	50	68	37
GCCCCAATAAGGCTCG	alt_5668_new	1	5	8	4	7	6	3	4	4	4
TGCCGTACAGCGAACC	alt_5668_new	32	50	53	35	54	34	49	30	57	26
CTGCGCGGCATAATGC	alt_5668_new	120	140	133	92	131	116	144	82	157	99
ATGTGTGCAAATAAAC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CCTTTTTTGTTGTATC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
GCTAGTGGTCTCTCCA	alt_5668_new	0	0	0	0	0	0	0	0	0	0
GTATCTCCCGGAAACA	alt_5668_new	7	26	10	6	28	8	29	5	19	4
ACTCGCCGTCCTTATA	alt_5668_new	0	0	0	0	0	0	0	0	0	0
ACTTCTACGCAGATCT	alt_5668_new	0	0	0	0	0	0	0	0	0	0
GACGCCTTGCATCTTA	alt_5668_new	41	63	37	37	59	30	49	33	54	32
TCCATAGGTCCCCCGC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
GGAGTCCTCGATTGGG	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TCGTTTGGTGGAGTCT	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CTAGTTACATGACTTG	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CAAGCAGTTGCTATAG	alt_5668_new	56	117	58	46	92	64	101	45	123	45
GATTCCTCGCGACAGA	alt_5668_new	0	0	0	0	0	0	0	0	0	0
GAACGTTAGCCGTCAT	alt_5668_new	0	0	0	0	0	0	0	0	0	0
ATTGCTCACATTTCAG	alt_5668_new	21	46	25	27	34	20	37	20	39	24
AAGTCATCTTTTTATA	ref_5668_new	52	64	54	49	66	34	63	44	54	28
AGAAGACCGCACCGAT	alt_5668_new	35	51	48	44	45	32	50	41	52	30
CACTTGGTTTGACCCG	ref_5668_new	32	66	51	49	43	25	47	34	63	41
ATCTCCGGGCATACGT	alt_5668_new	33	30	35	23	35	23	32	21	35	25
GATGCTGTTAATTAGT	alt_5668_new	41	50	56	28	65	38	68	39	81	48
TTATGAGCGCATTGGG	alt_5668_new	177	274	231	188	257	161	304	166	313	165
TAGCTCTCGCTCGTGG	alt_5668_new	14	16	26	14	11	11	14	5	21	11
AGCAATGTATTAATGT	alt_5668_new	8	6	9	3	9	7	8	5	14	3
AGGAAGTACACGGTCT	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TCTGCGACACGCGCCG	ref_5668_new	55	62	62	38	60	32	56	42	57	32
ACAATTAATTGACCGA	alt_5668_new	1	2	1	1	0	0	4	1	2	0
GTATACGTCTTATATT	alt_5668_new	49	99	74	63	107	62	87	60	94	73
CTTACATGGCGGTCAC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TCTGCCACATCGCGTT	alt_5668_new	5	13	5	4	13	3	6	7	16	5
CCAGATTAGCCGTGAG	alt_5668_new	80	146	94	82	184	87	159	91	164	79
GGCGCGACCTTTCATG	alt_5668_new	1	0	3	1	1	0	0	1	1	1
GAATTTAAACAGGCAT	alt_5668_new	23	48	33	21	36	35	34	12	48	25
CCTGTCTACGCGCTTG	alt_5668_new	68	203	88	75	197	64	216	58	251	47
CAAGTCCTAACAGGTG	alt_5668_new	0	0	0	0	0	0	0	0	0	0
ATCGATCTCTCGTCGT	alt_5668_new	11	16	8	8	9	10	14	4	19	10
CCTCTGTCGCGATCTG	alt_5668_new	4	20	5	6	15	7	20	5	8	1
GGAGTAACTCAGCATG	alt_5668_new	9	10	7	14	9	6	9	2	12	7
TTACTGGTTGTGCCCT	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TGCTCGTGAGCGGCTT	alt_5668_new	13	5	6	9	8	8	6	5	12	10
GTAATTTCATGCCGTG	alt_5668_new	32	46	35	29	38	34	49	32	61	31
TCTACCAGAACTTTTT	alt_5668_new	25	51	19	14	34	22	39	18	32	14
TGTGGTCCCGGTCCCA	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TCTTTCGCGGAGTTGG	alt_5668_new	8	7	6	7	9	2	11	5	11	8
CAACAAGCGGGCGAGG	alt_5668_new	5	7	6	2	6	1	6	1	6	3
CTTCTACGTTGCGATG	alt_5668_new	20	36	22	23	31	26	33	18	25	17
GCCCGGTGCCCGCCCT	alt_5668_new	75	101	90	81	124	89	121	85	131	78
TGGGGGCCCTACCCCC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
CTCACGGAAACCACTA	alt_5668_new	22	52	31	17	57	36	59	16	60	13
TATACCCGAGTGGCGA	alt_5668_new	21	42	28	21	26	30	36	19	36	31
CTTCATTTGCTGTAAT	alt_5668_new	32	52	42	40	48	39	65	36	50	32
AGCAATGTATTAATTA	alt_5668_new	8	23	8	7	16	18	15	10	19	9
GTACATACTTCTTCTC	alt_5668_new	0	0	0	0	0	0	0	0	0	0
GCTCCTAAGCTCGGCG	alt_5668_new	27	23	35	34	39	18	38	29	37	27
TACCTTACATGCGGTA	alt_5668_new	11	15	21	9	16	16	28	8	18	13
CTTGGTGGCTCCGGTC	alt_5668_new	21	19	27	26	30	19	28	7	30	23
ACGCTGACAGGCTAAT	alt_5668_new	0	0	0	0	0	0	0	0	0	0
TATGGTAATCCCCCGG	ref_5629_new	27	22	29	16	20	22	34	18	20	24
CAGCGCAATTGACTTT	ref_5629_new	2	0	2	6	3	1	3	3	6	2
CTTTCATTCACAGAAG	ref_5629_new	9	2	6	9	4	5	6	2	3	4
TTACGAACTATTCCAT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TGGCGAATTATTGCAC	ref_5629_new	3	3	4	3	4	2	3	2	10	7
GTTACGGTATACTCAT	ref_5629_new	5	11	4	6	7	9	7	8	10	5
TATTGATTTTCCGCAA	ref_5629_new	33	29	45	32	41	32	27	23	31	20
TTTGGTATTCATCACG	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TCTCACGTTCTATAGA	ref_5629_new	26	37	40	30	24	40	39	21	30	21
GAGCAACCTGTCACCT	ref_5629_new	127	126	131	128	137	105	141	116	180	103
AAGCCCGGGGACAATG	ref_5629_new	19	11	12	15	8	17	17	13	26	7
TTTTTTCCCTTGCACA	ref_5629_new	27	14	19	23	27	17	20	11	21	21
AAGACTTCGCTGGCTT	ref_5629_new	17	20	26	16	19	22	23	19	37	22
GACCGTTCACTGAAAG	ref_5629_new	24	32	22	20	23	28	11	17	21	20
CTACTCCGACCGATCT	ref_5629_new	3	2	5	4	1	4	2	2	0	2
ACTGTAAAACCTTCGA	ref_5629_new	16	15	30	14	15	16	11	20	18	17
GCATTCAAACTTCTCT	ref_5629_new	11	14	12	16	11	19	10	17	11	24
AACTTGCCGCCGATTA	ref_5629_new	17	13	23	18	11	19	13	16	18	15
TATAGTAAAGCCGTAA	ref_5629_new	45	49	48	45	34	38	51	21	39	26
GACGCTTAGAGCTCAC	ref_5629_new	29	35	39	38	42	30	32	39	39	23
ACTTAGAGGTCTCCCG	ref_5629_new	0	0	0	0	0	0	0	0	0	0
CTTGTTATCGCTCAAT	ref_5629_new	43	37	46	48	39	44	39	51	35	45
TCATACCGGCTTGCCT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
CATATTTATCTTGGCG	ref_5629_new	49	39	59	33	40	30	37	26	51	33
CTGTTCATTAGTGGTG	ref_5629_new	53	60	67	51	69	35	76	43	50	50
ATTTGTTGGTCATCGC	ref_5629_new	0	0	0	0	0	0	0	0	0	0
AAAATTAATGTACGGT	ref_5629_new	30	33	33	21	25	25	21	29	35	22
GGTTGTACTCATTTTA	alt_5629_new	167	166	198	149	200	176	209	167	221	160
TTGCTACCGTAATAGA	ref_5629_new	7	8	7	2	7	12	6	6	7	3
ATGGAGACCCAAAAGT	ref_5629_new	55	59	70	50	43	51	48	55	57	39
CTAGAAGATAGTCAGG	ref_5629_new	27	34	30	38	38	29	38	41	54	35
GCAGTCCTACCCATAT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TATAGCAGTCAAACGT	ref_5629_new	31	28	28	28	38	27	29	16	29	22
AATGGCCGCATTATGA	ref_5629_new	5	5	9	11	6	11	9	7	8	6
CATCTTATCAGAACGG	ref_5629_new	57	24	56	39	33	27	35	35	32	42
CCACTATGTCTTCAAC	ref_5629_new	80	87	89	68	79	63	101	69	89	56
GGGATTATTCGTGTGT	ref_5629_new	43	39	62	40	42	27	43	32	34	26
ACTCGGACTCGACAGT	ref_5629_new	4	1	4	3	0	5	1	0	0	2
AATGGTTTAAGTAGCA	ref_5629_new	77	94	64	75	76	61	75	82	93	50
ATCCTTTGTTTTGATA	ref_5629_new	0	0	0	0	0	0	0	0	0	0
CATCAACGTTCTTAGT	ref_5629_new	50	51	54	41	54	44	59	45	50	38
CTTCCAGTTGTGATAA	ref_5629_new	0	0	0	0	0	0	0	0	0	0
GATATCTAGCAGAATG	ref_5629_new	18	10	23	28	17	22	15	19	14	14
TCTTGCTGTTGCATTC	ref_5629_new	14	11	14	12	7	8	8	11	15	12
GGGATTTTCTTTATCA	ref_5629_new	15	12	14	8	16	11	13	14	16	10
TTTTTCTTGATAACGG	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TACTATGCCTCAGCGT	ref_5629_new	16	27	35	22	27	16	20	29	18	18
AATGCACACGTTGATC	ref_5629_new	173	169	163	160	165	157	159	146	187	131
CTGCTCTTGTTTTCTT	ref_5629_new	51	38	82	72	53	55	47	49	29	49
TTTCCATATATTTTCC	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TGCTCTTGGCCCTGGC	ref_5629_new	45	46	33	30	30	29	36	28	34	37
TTGGCATAGTTTTACG	ref_5629_new	0	0	0	0	0	0	0	0	0	0
ATGTTCGACGATGATC	ref_5629_new	116	93	130	79	103	75	96	88	98	86
CGCCGGTACCGATCCA	ref_5629_new	0	0	0	0	0	0	0	0	0	0
ATCGGAAAGTTATAGC	ref_5629_new	0	0	0	0	0	0	0	0	0	0
ACGTCTGTCGGCCCGC	ref_5629_new	52	53	62	47	61	55	46	60	65	64
AGGTTAAATCCGAGTT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
GTTAATGGGCTCCACT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TTTTCAATTACGTTTG	ref_5629_new	13	13	29	18	19	20	14	11	13	10
CCATCAGCTGCGTAAT	ref_5629_new	88	67	117	93	84	64	53	82	75	66
TAGTCATGTTAAGTGT	ref_5629_new	27	28	33	26	33	24	38	28	33	28
ACCCCGATACTGAGCA	ref_5629_new	30	68	86	65	78	74	70	37	72	39
GTCTCGGTAGTCATGT	ref_5629_new	41	32	40	39	44	37	47	35	44	28
TCGTTCCACGGTGAAG	ref_5629_new	50	57	70	64	63	67	60	51	69	46
GGCACGAGGTATTTGG	ref_5629_new	25	29	37	40	20	30	29	28	34	25
ATCTTGGGAAACAGAA	ref_5629_new	67	73	98	54	63	72	56	62	51	75
CCAGTGATGGCTCCGC	ref_5629_new	28	31	27	25	40	26	41	19	32	30
ACTTACTTTTCTTTAG	ref_5629_new	0	0	0	0	0	0	0	0	0	0
CGTACGTAGCGAGAAT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TATTAAAGTTTTTGCT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
ACTGGTGCTGCTTCAC	ref_5629_new	34	39	40	27	33	33	42	41	36	41
GTTTGCCACGACTTGA	ref_5629_new	91	89	108	94	119	101	91	85	88	73
GCGACGAGTGATACGA	ref_5629_new	0	0	0	0	0	0	0	0	0	0
CTTCAGGGTGATTCTT	ref_5629_new	29	25	35	24	22	27	36	29	30	14
TTACTTCTTTGTTTTG	ref_5629_new	33	17	43	35	11	28	20	20	29	26
GCGAGTTTACTTATTT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
CCTCCTTTCTCTTACT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
GGTATCCCCATCTTTA	ref_5629_new	17	26	21	15	21	5	32	9	24	10
TTGTCGTGTAACCCGT	ref_5629_new	50	37	65	60	53	48	51	35	60	30
GGTTTAGCGTCCGCTA	ref_5629_new	0	0	0	0	0	0	0	0	0	0
GGCAGCACTCTGTGTT	ref_5629_new	18	11	21	27	18	19	28	22	16	23
GACTACTGCGATCCAG	ref_5629_new	56	39	62	68	41	44	58	50	52	46
CGGGAGGGCTTTCTAA	ref_5629_new	1	6	8	8	5	6	4	9	3	5
GATGATCACATTAAGG	ref_5629_new	121	113	155	128	106	143	138	108	135	99
GCCGGCCAGCGATTCA	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TTCGCCCATGCGTATT	ref_5629_new	15	23	13	9	16	5	15	5	17	14
GCTTCCAATCTCACCA	ref_5629_new	74	60	82	78	71	68	99	71	96	55
CGATCAAATTGAGCTT	ref_5629_new	45	49	34	45	35	45	47	42	36	37
GGCGTCGTCTGCTCAT	ref_5629_new	10	17	15	16	10	18	25	9	15	14
GTCGTGGTGTCCTTTT	ref_5629_new	25	32	28	33	24	34	19	17	47	37
GACTGGATTCGTCGGC	ref_5629_new	141	99	168	143	134	145	116	153	133	126
ATCAACTTCGCTACAA	ref_5629_new	52	48	44	48	33	30	40	45	45	40
TTCTAGTTCCCCGTTC	ref_5629_new	12	62	21	10	63	7	56	11	63	11
GCCAGAATATTAAGCG	ref_5629_new	23	13	17	24	31	8	22	16	23	18
CGTATTCTTTCGATAT	ref_5629_new	9	2	6	7	3	3	7	6	6	3
TATTCCGTCCTGTGCT	ref_5629_new	0	0	0	0	0	0	0	0	0	0
TCGTGTCTGTTCTCAG	ref_5629_new	0	0	0	0	0	0	0	0	0	0
GTTCCAAAGGAATTTC	ref_5629_new	11	21	18	11	19	11	15	11	9	20
AGTTTAGCGTCCGCTA	ref_5629_new	125	131	157	116	104	103	102	102	103	117
ATGAGGGCGTGACTGT	ref_5629_new	46	43	87	52	62	57	70	43	54	46
CTCGTATAGTAGCGGC	ref_5629_new	27	31	37	42	28	28	31	25	33	17
GTCTGCTTTTGTAGAT	ref_5629_new	9	11	18	15	7	20	11	15	10	12
AGGGGTTTCGGCTCTC	alt_1819_fdr	20	17	23	20	26	25	22	20	27	16
ACAGGTACATATCCAC	alt_1819_fdr	18	21	17	22	24	17	19	18	27	10
AAGTTATTTGCGAAGC	alt_1819_fdr	0	0	0	2	0	0	0	0	0	0
TTAGATCATTAACCCT	alt_1819_fdr	281	282	321	293	238	274	290	247	291	246
AACTCGGGCTTTCAGT	alt_1819_fdr	30	37	44	32	42	36	51	35	36	30
TTGAACATTAATAGAT	alt_1819_fdr	13	8	8	6	9	12	8	5	9	5
ACCGATACCGGTGAAG	alt_1819_fdr	12	9	6	11	10	9	11	10	12	14
GAACTTAAGTGTCTTC	alt_1819_fdr	177	167	185	181	190	152	190	157	201	147
GTTCTTCTACAACAAC	alt_1819_fdr	25	36	12	28	40	36	33	16	34	12
GTCAGGTGTTTGGCGC	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTATCTCAGTTT	alt_1819_fdr	38	36	34	44	49	44	35	37	39	52
GCGTATATGGATCCGT	alt_1819_fdr	27	29	39	21	26	20	24	27	40	29
TCCTACTTTGGCTCTA	alt_1819_fdr	19	27	24	12	22	19	22	13	19	16
GCTTGGTGCTCCGTTT	alt_1819_fdr	27	28	39	29	35	23	36	21	29	20
ACTAACCTTAGCTGGA	alt_1819_fdr	37	89	19	26	98	20	105	25	97	34
TTTAGTGTATGGTGCG	ref_1819_fdr	111	143	117	86	130	74	120	86	135	64
TATCTTGTGCCGTATA	alt_1819_fdr	42	46	41	42	40	46	47	28	54	40
CGTGGTGCTTCAGTTG	alt_1819_fdr	15	28	20	29	28	20	30	12	27	26
AGCATATTGCCTAGAA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCTTGTCCTGCCC	alt_1819_fdr	76	60	74	64	71	80	75	63	83	64
TCGTTCAAGACGCCGT	alt_1819_fdr	198	210	224	215	206	211	208	192	211	176
CAGTTACCGAATACTG	alt_1819_fdr	1	8	16	8	8	6	13	8	9	5
AATATTATCCAATGAG	alt_1819_fdr	76	86	90	61	82	61	73	57	95	76
CGCCATGGACGCTATG	alt_1819_fdr	61	34	43	56	35	45	47	39	43	40
TGCTACTTTACATCGT	alt_1819_fdr	16	23	34	25	31	18	18	8	30	22
GTATCTTATGTTATTT	alt_1819_fdr	13	14	19	28	20	25	21	12	11	15
TATGAGGCCGGTCAGA	alt_1819_fdr	124	135	174	111	114	131	119	102	137	112
CAGTCGTGAGCCGGCA	alt_1819_fdr	6	14	5	6	5	9	10	3	11	6
GGCATGCCCGCATAAT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TATTATCTGTCACGAA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGCCCTAATTTG	alt_1819_fdr	9	5	10	11	10	6	11	8	9	6
TCAGCGTGAAAGAGCA	alt_1819_fdr	63	51	79	48	68	53	56	37	69	65
AAAACTAACCGGTAGA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
CATCTGTGTCAGTACC	alt_1819_fdr	23	29	33	27	41	47	32	17	31	21
GACGTCTTTCAGGCCA	alt_1819_fdr	48	33	46	28	49	35	47	34	61	32
CCAGCGGGGAAACTGG	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGGCTTACTCATC	alt_1819_fdr	6	7	3	2	8	2	3	6	9	4
GGCAACTAGCGCTCAC	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTTCTCGTCCGAT	alt_1819_fdr	13	3	15	8	11	7	14	6	13	16
GCAATCTCTTCATTAG	alt_1819_fdr	40	37	41	30	43	28	37	18	53	29
CTTAAGCTGAAGGGCG	alt_1819_fdr	8	14	11	9	9	7	7	4	6	6
TCTACGTGCCAGTCCG	alt_1819_fdr	4	2	10	5	4	11	11	7	8	1
GATACTTGGTTCGGCA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
ACATCTTATTGTTTAC	alt_1819_fdr	33	34	53	39	26	27	35	40	38	41
CCGCTTCTAGCTCGTG	alt_1819_fdr	31	56	45	24	42	45	44	38	49	52
TTGAGCGCACCGATCC	alt_1819_fdr	18	17	19	8	15	15	15	13	12	11
TCTCGCCAGTTTAAAG	alt_1819_fdr	8	9	13	14	22	8	9	10	13	7
GGCGGGGTCGTGCGAA	alt_1819_fdr	27	20	34	16	22	30	21	31	21	26
CGTACACGCCCTATCC	alt_1819_fdr	11	27	2	5	37	7	48	9	32	4
TGTCTCTAGAACAGTT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
CCACCGGACCGTTAGT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTTTAATTAGGCC	alt_1819_fdr	23	25	24	18	21	14	23	24	21	16
GGGTGTTGCATTGACA	alt_1819_fdr	24	35	27	27	21	18	42	18	34	22
ACGCGAAGCCCACCAC	alt_1819_fdr	47	35	73	44	44	53	59	63	56	51
TACACGGATTCTCAAT	alt_1819_fdr	18	13	13	11	16	12	13	10	17	14
AGAATTCTATCCGGCT	alt_1819_fdr	75	67	66	70	102	70	68	59	71	60
CGTTCTGGGGGGACTC	alt_1819_fdr	51	38	45	37	60	47	65	47	81	46
TTTATGGTATGAAAGT	alt_1819_fdr	27	53	49	41	48	42	39	37	48	38
ACCACTTAGCCGCGGA	alt_1819_fdr	11	13	22	15	11	12	17	20	23	18
CATGCCGCATTGTTGT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
AGCGGGGATAAATGAG	ref_1819_fdr	88	89	106	66	64	78	86	65	85	57
AAACTGTCCTTATCTC	alt_1819_fdr	39	45	49	43	66	40	62	44	52	30
TACCAGGTATGCTGCA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCCGCTGACATA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TTTTATGATGTCTGAG	alt_1819_fdr	5	15	12	20	13	8	17	24	16	14
GCCCGTGGAAGTCTAC	alt_1819_fdr	22	30	17	17	33	13	32	13	32	11
ACTTATACTTCTTTAT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
CTGAAAAGCTCTGTCG	alt_1819_fdr	29	43	28	39	61	21	43	35	34	29
TTCCTTACAGGGCCAC	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
ACACAGAACAGTTGAC	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTGACGCGCGATC	alt_1819_fdr	80	72	98	74	66	54	76	60	73	58
TTTCTGTATAGTCCAC	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
GCACAGAACCGTTTGG	alt_1819_fdr	48	74	52	55	69	39	77	58	66	27
AGAGCTAATTTAAGGC	alt_1819_fdr	74	81	115	88	87	86	100	74	85	64
AAGTAGACACATCTGG	alt_1819_fdr	8	4	10	10	14	2	6	5	5	6
CTGTGTTCGTACTAAA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
ACCGAAATGTCAGGTT	alt_1819_fdr	45	42	46	48	47	46	44	43	53	41
CCATCAAGGTGTTGTT	alt_1819_fdr	21	28	36	21	44	24	39	15	22	27
CAGTGTTTCTCTAGAG	alt_1819_fdr	17	27	29	24	22	25	33	35	33	24
GGACACCGGTAATTTT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCATGCCATACCA	alt_1819_fdr	12	11	12	15	12	10	14	8	8	4
GCTTTATGCAGCCTTC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTCTATTGTTAAG	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGTGTTCTGTTAA	alt_1819_fdr	249	272	311	279	291	278	317	219	328	211
TTATTGGATCACGACC	alt_1819_fdr	55	55	68	58	67	46	67	37	62	44
AACTACACTAGCGATA	alt_1819_fdr	0	1	3	5	2	2	2	4	0	3
ACTGGTTATGTATCCG	ref_1819_fdr	125	124	151	121	122	114	136	99	160	105
ACCCATGATCTGTCCT	alt_1819_fdr	88	75	103	82	72	67	73	52	90	69
TGGGGCTGGTAGACTT	alt_1819_fdr	9	9	10	10	10	8	12	10	11	10
ATTGTGACTATACGCT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
CAAATCTCATGGCCAC	alt_1819_fdr	8	5	6	8	8	10	17	8	1	3
GGCCCATAAGCTGACA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
ATTAAATCACGGAAGG	alt_1819_fdr	167	162	189	180	167	146	149	164	159	125
GTTATTAGAATCTAGA	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TCGAAATCGGTGGTCT	alt_1819_fdr	60	67	74	62	55	48	73	66	79	65
ATGCTCTAGAACAGTT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GCACTTAGCCGCTTTT	alt_1819_fdr	19	25	18	24	32	29	27	29	36	20
CTGAGAGTTAGCCCTT	alt_1819_fdr	14	15	16	16	5	11	13	11	9	13
CCCCCAACAGTAGGTC	alt_1819_fdr	14	18	21	13	15	10	13	12	19	11
CCGCGGGCGGGGGAAG	ref_1819_fdr	43	165	72	45	118	42	142	44	133	59
TTTCGGACGTAACCAG	alt_1819_fdr	32	33	32	27	31	19	28	23	40	26
AGGTTATAAATCAGTT	alt_1819_fdr	38	43	49	42	46	44	36	37	43	28
TCAGCGCACATTTGGC	alt_1819_fdr	15	21	22	18	14	17	17	14	20	18
TAATACGCTTTCGTAA	alt_1819_fdr	19	14	27	14	26	19	20	11	16	18
AGAGGGTGCAAGCGTT	alt_1819_fdr	93	115	100	86	106	73	103	77	123	70
ATCGTGATTTCTCCCG	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCTAACTTTCAT	alt_1819_fdr	6	10	9	10	8	6	3	4	7	4
GAGGAGATGAGCGAAC	alt_1819_fdr	0	0	0	0	0	0	0	0	0	1
CACATGCTGTATCTTT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTCTCCCTCTGTC	alt_1819_fdr	3	4	3	1	5	5	4	3	8	0
TCTGTCGGGGCGATGC	alt_1819_fdr	15	28	27	32	23	22	24	20	37	19
TTATTTACTGAAAGCT	alt_1819_fdr	314	339	394	317	332	330	392	289	371	288
CTGATTGATATCATCA	alt_1819_fdr	54	68	50	41	58	64	69	35	75	50
CACTCTTAGCAAGGGT	alt_1819_fdr	55	93	60	69	52	49	74	44	72	45
TCCTCTTTGATTAGAA	alt_1819_fdr	47	55	57	46	42	35	50	32	56	42
AGACGTGGCAACTCCG	alt_1819_fdr	97	70	101	72	72	56	66	70	102	84
TTGTTATGCCTTGTAA	alt_1819_fdr	50	43	58	54	61	47	52	41	40	54
CATTCTTCACCACTAT	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
GGGAGCAATGATCTTT	alt_1819_fdr	90	87	119	123	104	98	100	105	113	102
GCGGTTCTAATCACAG	alt_1819_fdr	78	81	71	61	70	64	97	58	83	66
CGTATATCAGCGGTGT	alt_1819_fdr	16	17	32	18	24	26	17	24	27	14
CGGTCCACCGTCCTCT	alt_1819_fdr	11	24	16	13	30	11	13	10	19	15
GGGCGTTCTAGGAGTT	alt_1819_fdr	6	19	20	17	35	16	24	15	20	19
TGTTTGCCCCCTCCAG	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
AATGCTCACGTTGATG	alt_1819_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGTTCAAATAGGC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GTTTTAATTTTTGAAG	alt_5782_new	91	62	93	103	83	94	63	64	76	55
CTTCCGACTCCGACGC	alt_5782_new	0	1	0	2	4	1	3	1	3	2
ATTTCTATCGCATAGT	alt_5782_new	31	18	28	32	26	22	24	27	14	23
CCCAACCCGATGAATC	alt_5782_new	52	71	83	62	86	58	81	61	87	46
ATGTTTTCTAGGGGTG	alt_5782_new	18	14	22	23	20	19	21	16	13	9
GCTCATTGTCAGAAAC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GCTGGTGATGTCTCTC	alt_5782_new	21	22	31	46	21	22	23	20	15	25
AGTTATGAGTATGCGG	alt_5782_new	11	11	17	13	9	6	8	10	12	9
GCGACGAATATGTGCA	alt_5782_new	3	18	8	4	11	3	13	3	4	6
AGTTTGGTTGCGTTCC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ATGCCACTTACGCTAC	alt_5782_new	19	47	31	28	54	20	42	28	33	27
TTGAAGGGTCACGTGT	alt_5782_new	35	41	53	29	33	31	55	33	45	42
CATTTACAGTGTCATT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CAACCCATTTAAGGTG	alt_5782_new	7	10	12	13	16	14	21	17	24	14
GAAGTCCCTTGTCGTC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GTCTGGGTTGACCCTG	alt_5782_new	10	16	8	8	13	4	16	11	8	4
ACGTTTATAGTTCCCG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TCCTGAGTTTCAGCTC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ATTGTACCCCCTGATT	alt_5782_new	8	9	16	16	20	11	10	8	21	11
CTACTTACCTTCCATG	alt_5782_new	22	89	25	29	98	25	99	15	114	22
GACGTGTGTTTGTACA	alt_5782_new	3	2	10	11	2	7	3	5	7	8
CGTCGTTAGAATTTGA	alt_5782_new	18	16	23	24	9	32	18	20	19	18
AGGGGGCGTATGATGT	alt_5782_new	36	37	58	32	36	43	52	37	46	29
AGCACCTTTTCTGTAC	alt_5782_new	14	10	14	18	18	17	17	8	19	11
ACGGTCTGCGCTCTAG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TGCGCAATTCGCGCAC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TTATGGTCGGATTCTT	alt_5782_new	22	25	23	28	22	23	23	21	25	25
GTCATTATCTGCGTCC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
AAATAGCGTTCTCATT	alt_5782_new	24	25	36	19	33	37	41	25	39	32
GGTCCTTGCGAGCGCT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TCCCGCATAAGAGTTA	alt_5782_new	2	1	1	2	3	2	5	4	3	3
GTTTTAATGTCCGCTC	alt_5782_new	42	35	57	35	45	33	31	41	29	34
GCGTTCTATCAATAAG	alt_5782_new	23	24	25	29	25	22	31	22	24	26
CCTTAGAGCGTTATTC	alt_5782_new	30	35	32	40	68	36	49	21	59	27
TATCCGTATCGTATAT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CTCGGCCGATCCACTC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GAAACGTCTTTACACT	alt_5782_new	42	22	29	38	28	26	41	25	32	30
AATAACGACCTTAAGA	ref_5782_new	7	9	8	9	10	6	4	10	7	8
TACGGTACAAAGTGCC	ref_5782_new	4	3	1	0	2	5	3	2	0	0
CCCAGAACACGTCTCG	alt_5782_new	8	7	14	8	18	2	11	15	16	8
TCCATTTCGCGCGCTG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GGCCAATCTGCATCTA	alt_5782_new	26	25	20	23	22	14	19	22	18	15
TGTGTGGCGGTTGACC	alt_5782_new	13	11	21	18	26	14	16	16	15	12
GGATCTGTTAGTACCA	alt_5782_new	9	13	7	7	7	10	8	9	10	8
GCTTAATCTGTAATTT	alt_5782_new	43	32	57	39	42	42	45	52	39	43
CTATTATGGCTTTATT	alt_5782_new	117	138	155	134	117	124	137	110	154	119
AACTCCCATACCCGGC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CGGGCATTAGCCATAT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CTTCCCGTAGTTCGAC	alt_5782_new	1	14	12	11	9	10	13	2	12	4
GCAAAATAGTTCCCTG	alt_5782_new	28	30	38	34	42	27	43	26	52	33
ATTATACACGATATCG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CAGATAATTCACCGGT	alt_5782_new	8	7	11	9	3	6	10	14	15	8
CATAATTGTCACGACT	alt_5782_new	91	99	117	102	109	87	106	98	116	75
CTTATTTAGAAGCGGT	alt_5782_new	12	6	6	4	7	11	11	7	14	14
CTTGTAGTCTTGCACC	alt_5782_new	68	97	94	88	88	59	86	62	90	79
CTGCTCTTGCGTGGTC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CACACATCTCCATTTT	alt_5782_new	0	4	6	2	3	7	2	2	3	3
ACATGGCACGTTCCCG	alt_5782_new	4	7	10	7	7	12	5	11	7	8
ATTGGGAACCAGGTTT	alt_5782_new	11	15	8	12	6	11	11	4	10	9
TATCTACGAGATTTGG	ref_5782_new	38	47	56	34	41	33	43	31	40	47
TGCATAGATTTCGTCC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TGTTCACGCGCCCTTG	alt_5782_new	42	35	51	43	38	40	31	37	40	37
CTAAAAGCTCGCTCCA	alt_5782_new	14	13	18	16	10	11	12	14	15	12
TTCTCGCCGTAGGGGG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GAACCCAACTCTTAAG	alt_5782_new	33	30	32	22	28	27	25	22	15	23
ACCCACTCAGCACAGT	alt_5782_new	44	37	63	42	46	51	59	48	58	39
GAGCCTGGGACGTTTA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ATCTTTTGCCCTCGCA	alt_5782_new	13	14	23	22	18	21	18	17	16	22
CTGGTGGGAAACCAAC	alt_5782_new	5	5	4	5	4	10	4	2	7	2
GTTTGTATATCGAGCT	alt_5782_new	1	4	5	1	1	4	3	3	4	7
CATCTCAATATGGGCC	alt_5782_new	4	6	10	3	1	3	3	4	8	2
CCGTGTAAGGTCATCC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
AGTTTTTGATACATCC	alt_5782_new	14	20	10	19	22	18	20	14	21	8
CAGGGTGCTGATTAGC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CCAACATTTTTTCTAG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CTTGTGTCCGACATCG	alt_5782_new	2	8	14	13	7	10	13	3	4	1
CCTAAGAATGTCTCCC	alt_5782_new	22	20	19	22	16	16	18	16	34	13
AGCCGGTGCGGGGGAG	alt_5782_new	3	2	2	1	4	5	3	2	6	3
CGGTTCCGTACCTATC	alt_5782_new	10	17	11	10	11	7	11	4	24	4
TGGGTAGTAGCCATCA	alt_5782_new	20	28	27	24	26	30	19	25	31	26
ATTAGCTCTTGTGGAC	alt_5782_new	59	62	85	72	61	56	63	73	73	54
GCTAAGGGTCGCGATC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ACTTCGATCACTACCA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CCGATCGACTTCTTGG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ATATACGGGACTGGTA	alt_5782_new	95	70	79	91	65	81	58	84	83	71
GAGTGGACAGTTTTCC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TTTAGTTTTAGGTCAG	alt_5782_new	22	30	18	35	23	21	34	16	30	31
ATATCAGCCACTTTGC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GCGATGTCTCCACTCA	alt_5782_new	9	3	7	7	3	9	6	6	2	6
CAGGGCGTTATGGGTG	alt_5782_new	64	59	75	57	61	58	44	63	39	49
TTCCCTCATATACATT	alt_5782_new	23	18	33	27	13	24	21	26	13	20
GCTGCCCGCGTCTGTG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CATACGTTTATTAGAC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CTCCCTATTGATATTG	alt_5782_new	27	42	46	37	49	31	49	30	62	33
CTTGTGGCTACCTGTT	alt_5782_new	0	2	0	0	2	0	1	0	1	0
TAAGTTTGTCAATTGA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ACTGTAGCTGCAAGGC	alt_5782_new	65	52	58	46	53	51	39	49	48	45
CGATGCGTCATATGAT	alt_5782_new	5	9	2	7	6	5	6	1	7	4
TAAACTTTTAACTTGT	alt_5782_new	40	33	60	45	38	43	38	41	32	37
GGATGGATTCTCCCAC	alt_5782_new	149	115	150	148	94	96	122	118	108	115
GTCACACGCATGGTAT	alt_5782_new	38	42	51	39	52	51	51	65	47	47
GTGCATGTGCACCCTT	alt_5782_new	25	18	39	27	25	18	23	27	32	19
GCTGACCGCGTCTGTG	alt_5782_new	52	66	82	60	83	68	93	62	105	44
TCGGGATTGATGTCGG	alt_5782_new	126	98	153	130	123	107	104	137	96	107
TTTCTCTCTTTCTTTG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GAAATTCGGCATCTTT	alt_5782_new	34	35	35	31	27	29	30	26	35	41
AGTACGTGCCTAGTAT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TAGGTACCCATCGCAC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TGCCTTCTTGGGTCAA	alt_5782_new	26	24	27	37	34	19	28	25	29	31
GGGGGCTTTCAACTGT	alt_5782_new	28	21	34	34	31	26	29	25	30	36
TTCGATAAACCGGCCG	alt_5782_new	17	12	20	21	10	17	11	16	16	16
GGCTGCAGTGGAGTCA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CGAGTCGCCTGCAAAT	alt_5782_new	8	10	8	5	10	8	5	6	3	8
GTAAAGAGTCATGGTC	alt_5782_new	21	30	27	17	22	21	33	26	22	20
TATTGCCGGCAAGCGT	alt_5782_new	6	8	12	1	9	8	11	14	14	12
GATAGATATCCTCAAG	alt_5782_new	29	28	36	23	31	40	27	24	38	31
ATAGGTGGAATATCAT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GACGAGTTTAAACCAC	alt_5782_new	71	63	94	92	66	71	73	67	69	68
ACTGCAATCGGGACTA	alt_5782_new	162	154	184	170	188	145	165	173	181	139
CATCCACGCGGCTTTT	alt_5782_new	6	3	6	4	5	2	2	9	7	8
GATGTTCATTGATCAT	alt_5782_new	42	31	47	33	37	25	39	36	46	34
GCCCGCTTACGCGGGT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ACAGTTATGTTGCTCA	alt_5782_new	30	26	27	25	21	24	26	32	29	19
TGTGGTCAAAATTCAT	alt_5782_new	28	36	47	42	53	48	60	37	50	33
AATCTCTTTGCATTGC	alt_5782_new	38	35	41	36	56	32	32	45	40	44
CATTTGTAGCTTGTAT	alt_5782_new	41	40	80	63	35	54	42	58	52	64
AATGCGACTTTCACAG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
AAGTCATGTGTCTAGT	alt_5782_new	66	98	89	84	85	72	100	60	78	79
CCGTTCCGTCTGCGTG	alt_5782_new	2	15	8	4	14	3	17	10	16	7
ATCAGCTTTCAGTCGT	alt_5782_new	12	20	17	9	14	17	20	19	20	12
GGTCTATATAGTCCGT	alt_5782_new	0	0	0	0	0	0	0	0	0	1
GCCTCTCCCAACCCTC	alt_5782_new	2	1	1	3	5	2	2	5	4	1
GACTCTGATGGCTCTT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TTTTGTCGGTCGTATA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TCGTATGTCTGACCTA	alt_5782_new	41	37	62	40	44	36	44	29	44	25
TGTCATAGGGCTCAGT	alt_5782_new	10	19	14	9	19	9	15	14	19	7
TTTCTCTCTTTCTTCG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CAGAGCTCAAGCTGTC	alt_5782_new	2	0	0	1	3	0	0	0	2	3
CACATTGGATTTTGCT	ref_5782_new	55	58	77	75	73	64	59	81	81	54
ACTTGTTTGCCGTGCT	alt_5782_new	3	0	1	3	0	0	1	1	3	2
AGTTGATCCTGCCAAC	alt_5782_new	17	21	41	23	30	21	30	22	19	20
TGTCCTTTTAATCATT	alt_5782_new	4	4	2	4	2	2	1	2	8	4
ACGCTTCAGATACATG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ACTTCAATTGAAAGTG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
ATCGTGTATACCTTAT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
AAATTTGGCTGCTCAG	alt_5782_new	29	35	30	22	22	22	19	25	24	29
GCTGTGTGTTATCGCC	alt_5782_new	22	21	30	29	33	26	32	22	45	16
TGGCCCATTTAAATGA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GAGCAACTTAAAGTTG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CGTGCTGCTGTGAGCA	alt_5782_new	35	25	27	21	26	19	21	6	25	20
ATAGATCGGTCTGCGG	alt_5782_new	30	24	26	25	31	22	33	21	25	16
GTCCATTACCAGGCTA	alt_5782_new	70	56	77	51	76	51	39	65	55	30
CTTGTTTCCTCGTCTG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GCTTTGCTGTAGATAT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TATTCCCGGAACATAT	alt_5782_new	1	3	2	5	1	1	0	1	0	2
CGGATGGGGTTACACC	alt_5782_new	40	62	67	72	51	54	66	59	66	52
ACAATTGAAGTTTAAC	alt_5782_new	264	187	268	275	202	280	239	290	223	244
GACGACTTCATATTCG	alt_5782_new	69	73	81	86	61	63	73	62	76	63
GTAGGTTAGCTGTGAG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GGCTCGTTCGTAATGC	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CAGGCAGAGGTCCTGA	ref_5782_new	26	30	43	23	19	24	24	26	32	20
TCGCTGGCCAAGGACT	alt_5782_new	173	142	190	182	146	160	190	156	140	126
ACAGTTATTGAAATCC	alt_5782_new	15	33	32	31	32	20	23	33	27	20
TAACCCTCCGTAATTG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TAAGTTGCCTTGCATG	alt_5782_new	41	55	69	40	40	48	43	34	58	46
AATTAGGAAATAATTG	alt_5782_new	42	33	60	39	40	46	42	32	30	36
TAAGAAGGCTTGTTCT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TTACGATGCTACATTT	alt_5782_new	12	14	9	12	15	9	18	12	20	11
ACGCATCTCGTTGATG	alt_5782_new	96	92	103	95	81	85	91	92	111	98
TCGATTAACTGGTGGG	alt_5782_new	26	24	36	34	19	33	21	48	24	29
TCAAGATTTACCCCGG	alt_5782_new	6	7	21	23	11	14	11	12	13	14
AACGGGTGACAAGCTA	alt_5782_new	35	50	62	41	51	52	45	38	38	41
TGCCAGGTTTTATTAT	alt_5782_new	28	17	47	32	29	24	14	42	19	18
GATATCGCTCACATGT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
AGTTTCATTTATCTTT	alt_5782_new	3	5	4	3	6	5	9	10	4	9
TGAGTGTGGGATCGTG	alt_5782_new	46	50	55	55	48	49	31	30	36	34
TGGTAGCGCTTCCAGG	alt_5782_new	7	12	10	9	8	9	5	7	7	9
TTTTAAATGCTTTAAA	alt_5782_new	13	14	17	12	11	11	13	11	6	22
TGATCTCCGTTTCTCC	alt_5782_new	7	7	15	13	7	13	7	10	7	9
CGTTATTCGCATCCTT	alt_5782_new	100	79	116	104	100	85	122	64	88	81
TCGGATCACCGTTCCG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
GACTTGCTACACCTTT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
AAACTTTTCTCTTATC	alt_5782_new	7	5	10	6	3	3	6	7	6	3
AGCTTTTGCTTCAGTG	alt_5782_new	116	120	128	104	110	91	130	120	106	88
ATATTTTAAGTATCTT	alt_5782_new	6	5	6	12	8	2	12	7	7	9
CAGTTTGTAAATCCTG	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TCGTTTTAGCAGGAGG	alt_5782_new	17	28	24	32	19	29	21	20	10	14
CTGTACGCTATACACA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CTAACGCGGAAGGGGT	alt_5782_new	0	0	0	0	0	0	0	0	0	0
TGGTAATCGAAATCGC	alt_5782_new	6	1	10	10	9	6	16	4	16	10
TTTTTGGGACCCGTAA	alt_5782_new	0	0	0	0	0	0	0	0	0	0
CGTGTTGTCCCTTTGG	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTTACCGCACCTT	alt_5165_fdr	5	49	8	6	48	8	45	6	54	13
GATCCTAACCACTCTG	alt_5165_fdr	4	2	4	5	1	1	3	2	4	2
TCGATAGACAGCTCTA	alt_5165_fdr	23	14	29	13	23	15	29	31	20	21
CTTGTGACTCTGATCT	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
GACTTAATGTGCCAAA	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGCCCTCGGAAGG	alt_5165_fdr	52	58	46	58	41	59	71	63	78	50
AATCTTCCCTCATTTG	alt_5165_fdr	20	41	35	20	28	37	35	18	43	16
GGAGACGTTACCGACG	ref_5165_fdr	28	24	25	24	32	28	43	29	35	15
GCCCATTGTTTATGTC	alt_5165_fdr	18	28	19	23	23	16	22	22	18	23
CCGTCGCATTAGAATT	alt_5165_fdr	17	33	15	19	31	13	54	8	57	8
CTTCGGATTTTGTGGA	alt_5165_fdr	25	26	26	27	28	17	13	23	31	15
CTTTACCTTCACGCCG	alt_5165_fdr	0	0	1	0	0	1	0	0	1	1
GTGGCCATGCTCTCGG	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
GTACCGAGGTTTCTCT	alt_5165_fdr	38	41	35	24	43	30	28	30	49	26
TTGAAGCCAGTTTAGT	alt_5165_fdr	35	21	22	23	32	18	22	16	35	16
CTGTTCTTGGCATTAT	alt_5165_fdr	4	10	10	7	10	3	5	7	11	14
CGGTTTTTCGCTCAGG	alt_5165_fdr	8	9	6	7	7	4	7	5	4	2
GGTAAGGAGTACGCAA	alt_5165_fdr	36	32	48	35	31	38	36	43	31	44
ATTCACGCCGTTTGGA	ref_5165_fdr	123	128	133	112	146	97	116	100	131	105
TGCAAATGTAGCATTC	alt_5165_fdr	4	11	6	9	12	15	5	3	10	1
AAGTTTAATCGGGGCT	alt_5165_fdr	72	61	83	48	67	59	67	48	63	60
TCGGTCTAGTGGGTAT	alt_5165_fdr	43	43	61	50	55	46	40	28	44	33
CGATTTCCGTTCATTG	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGCTAGAACTGT	alt_5165_fdr	23	29	21	23	24	20	42	25	34	20
CCATCGGGGGCCATCC	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGTTTTTCCTTCT	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGTTGTATTCTCC	alt_5165_fdr	9	6	5	7	1	4	4	4	7	6
ACCCCGTTCTATGGTG	alt_5165_fdr	58	95	67	51	94	48	92	39	118	44
TTGAGCATACTCATCT	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGGCAGCCCTTGC	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGCTGTGATGGAC	alt_5165_fdr	32	29	36	32	32	32	39	27	30	35
TTTCTCTTTAATCCCG	alt_5165_fdr	57	53	63	55	34	40	56	31	62	41
ATTGGTATCATTTGCA	alt_5165_fdr	17	22	24	19	25	23	26	18	28	20
AGTTTAACACTCCTAC	alt_5165_fdr	5	5	2	3	2	2	6	1	2	3
TGGTTACTGAGTCTAA	alt_5165_fdr	40	21	32	26	33	34	34	22	48	23
GCGATCTTCCTAGTTT	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
GGCTAACGCCGGATTT	alt_5165_fdr	15	17	12	15	11	19	11	16	13	17
GCAACTCGCGATGCTT	alt_5165_fdr	13	11	15	13	12	12	9	8	9	8
TATTATGCTGGCATGC	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGAAACAACGCGA	alt_5165_fdr	57	36	42	48	48	44	46	50	47	51
CTTCCGCCAGCTGTAA	alt_5165_fdr	13	15	14	16	22	15	22	9	19	15
TTGTGTAATTTCGCAG	alt_5165_fdr	36	25	36	31	27	30	33	29	36	24
GGTATGGTATCCACGT	alt_5165_fdr	24	17	28	21	35	28	22	29	25	20
GAGCATATTGATGTTC	alt_5165_fdr	27	33	26	27	41	31	21	30	27	34
CTTGCATAATTCAAGA	alt_5165_fdr	18	20	10	13	8	8	17	10	17	10
CAAGGAAGGAACATTT	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
GATTAGTGGGTTAGTT	alt_5165_fdr	22	21	19	15	36	17	18	21	20	21
TACTAATGTAATGTCC	alt_5165_fdr	31	21	26	42	31	24	27	27	32	20
TGGTTCTAGTCTGACT	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCAAATGCTGTTC	alt_5165_fdr	11	8	21	19	11	17	12	10	12	11
GTTTATGGGTCAGTAG	alt_5165_fdr	1	0	0	0	0	0	0	0	0	0
GTACCTGGTTACTTAA	ref_5165_fdr	34	140	34	45	134	43	158	33	178	34
TCTACTAATTGGGTCG	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGAATTAGCCCTC	alt_5165_fdr	74	66	89	66	74	66	71	67	70	48
CCCTTTGCTAAACCTG	alt_5165_fdr	2	3	5	7	2	1	3	1	0	2
TGTGCTTAGGGAAAAT	alt_5165_fdr	21	32	26	31	33	17	44	26	39	33
CTACGACTGGGGGCTC	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
CTCTAAGAGCGATTAT	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGCTAATGTTAGG	alt_5165_fdr	26	14	31	24	14	29	32	19	42	29
TCCATCATGGTAGTGC	alt_5165_fdr	13	14	6	4	3	6	10	3	4	4
ATAACACAGCTCGGTA	alt_5165_fdr	48	77	51	43	61	60	57	44	78	51
TATCTGACCTGTGGCT	alt_5165_fdr	87	84	99	54	91	52	106	72	89	63
TTGTAATAACGTAGGT	ref_5165_fdr	27	37	30	32	32	26	27	17	32	26
ATGATGGTCTCAACAA	alt_5165_fdr	12	16	23	24	20	16	11	25	20	14
GTTGACCTAGTTATTG	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
TACTCTTGGATCTAAC	alt_5165_fdr	7	18	15	10	11	20	15	19	18	17
AGCCAAGCTCAGTTTG	alt_5165_fdr	17	26	13	9	22	20	27	20	25	7
CCTATACTCGCCACAC	alt_5165_fdr	14	16	10	22	10	15	9	5	12	7
CTGTCGAGCGTTCCGT	alt_5165_fdr	21	20	17	13	22	19	22	16	16	14
TTAAGTAATTTCACTA	alt_5165_fdr	57	63	71	69	54	55	73	62	73	64
CTGCATAAGCGCGGTA	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGGAGTGATTAAA	alt_5165_fdr	24	41	43	42	40	29	33	27	31	35
AAAATAATTGTTTTCC	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGAGAGTGACAAA	alt_5165_fdr	9	12	17	7	6	3	5	2	6	5
GGTGAGACAACCTGAG	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTTCTTCCTCCTG	alt_5165_fdr	10	8	23	14	19	21	11	16	21	16
TACTTTGATGCGTACG	alt_5165_fdr	13	22	17	19	23	11	24	22	22	12
GCAATACAATACAATT	alt_5165_fdr	22	33	32	28	23	19	38	24	17	17
CCCAACTCGAGGTGCC	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTTTTCGTTGTT	alt_5165_fdr	21	23	26	18	25	14	23	23	15	15
CGGACTTAGTATTATG	alt_5165_fdr	0	0	0	1	1	0	1	1	2	3
AGTAGTTGTCATTAAA	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
TAACAGTTTGCACGTG	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTCACCTCAGTTG	alt_5165_fdr	24	47	31	18	46	29	61	29	41	20
ATAGTCCTGCTAGGTT	alt_5165_fdr	81	65	66	67	90	83	65	70	86	54
CACCATATAGGATTTA	alt_5165_fdr	17	23	32	18	27	22	38	35	40	23
CTACGACTGGGGCTCG	alt_5165_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCAGCAGTTTGAT	alt_6030_new	6	11	4	8	8	5	14	3	18	2
CGAACTCATCGCAAAG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
ACACGTCGGTCCTATC	ref_6030_new	21	26	23	12	39	18	28	16	27	17
GCTGCTCAAGCGCACA	alt_6030_new	8	11	7	5	15	3	13	3	10	5
TGGCAGATGTTTGGCG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
CTTATTTTGTGCATCC	alt_6030_new	3	6	5	2	5	6	6	4	5	1
GTCTGATTTTTGGTAT	alt_6030_new	18	35	22	21	40	20	44	17	46	12
TGTCTACAGACTGCGA	alt_6030_new	0	0	0	0	0	0	0	0	0	0
TTTGCATCGCTCATAA	alt_6030_new	1	5	4	1	2	0	3	2	7	3
TTTTAGGTTGAATCTG	alt_6030_new	30	50	43	26	65	34	62	18	62	19
CACTCAGCCACTGGGG	alt_6030_new	18	40	20	19	42	17	62	16	45	10
ATGGGCTCCTGAGCTT	alt_6030_new	65	115	75	76	127	50	128	70	119	80
GGGATTACGTAAATTT	alt_6030_new	0	0	0	0	0	0	0	0	0	0
GCGTGTTGGCAGGGGC	alt_6030_new	19	69	23	43	72	27	65	30	58	28
TCACAATTTGCCGGCG	alt_6030_new	21	46	41	27	55	28	80	19	57	32
CCGGATCCATGGGTTT	alt_6030_new	35	48	40	40	58	23	55	26	47	22
GAAGAAGTGGGGCATT	alt_6030_new	21	45	27	33	51	25	41	15	47	25
TTCCATTATTGTGTGC	alt_6030_new	18	53	36	32	44	19	53	24	53	28
CCGGTTCGGATTAGGT	alt_6030_new	0	0	0	0	0	0	0	0	0	0
AGTTACGGCGATCCTA	alt_6030_new	16	24	22	15	20	11	34	17	15	10
TCCGGTCAGCGGCTGT	alt_6030_new	0	5	1	0	5	1	7	0	5	0
GGTTCTCAATGGCGTG	alt_6030_new	10	7	6	10	10	9	11	6	13	6
GTACCCACAACGCTCG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
TTTCAGGCGATCACAA	alt_6030_new	0	0	0	0	0	0	0	0	0	0
CGATTTCGGCTAATAA	alt_6030_new	0	0	0	0	0	0	0	0	0	0
CTAGCTTGTCAAGATC	alt_6030_new	0	0	0	0	0	0	0	0	0	0
CTGGAGGAATTTAATA	alt_6030_new	4	10	5	1	5	10	9	5	10	5
ATCGGCTACCGCGGAA	alt_6030_new	14	34	17	7	43	9	43	12	42	11
TGGGTCATATCATGAC	alt_6030_new	14	21	15	10	18	12	21	7	25	11
GATAAATCTCATCACG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
TAAGGTTAGCCGTACG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
ACTATCCGGTGAGTCT	alt_6030_new	34	54	26	22	53	23	57	13	62	34
GGATTGAGGCGCCCAA	alt_6030_new	35	58	33	38	57	33	50	34	56	35
TCGTCAGGCCCTCCGG	alt_6030_new	7	24	10	11	18	5	12	9	13	9
CTGTCTTTATTGGCAC	alt_6030_new	14	29	15	7	26	11	32	7	30	12
CTCTTCTGGTTGTTCC	alt_6030_new	41	79	29	23	50	19	66	20	76	24
CAAGTCCTTGATATAC	alt_6030_new	23	52	33	24	41	25	57	25	39	28
TCATTCTAGAACAGTT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TTTGTTTCCGTTGTGT	alt_6030_new	11	23	18	20	15	13	15	11	18	11
TCAATGTACTCCCTGC	alt_6030_new	1	16	4	2	12	2	10	2	19	2
CTGCTCCAGTCTTGCT	alt_6030_new	0	0	0	0	0	0	0	0	0	0
TATTAAGTAGCTTCTA	alt_6030_new	0	0	0	0	0	0	0	0	0	0
TCGTCGCCATCTTCAG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
GGTTACGTCCACTAAG	alt_6030_new	17	38	21	15	39	10	40	14	26	17
TGCGGTAGCTGTCAAC	alt_6030_new	0	0	0	0	0	0	0	0	0	0
CTCGTTTAGAAGTACT	alt_6030_new	29	67	32	36	49	33	85	33	60	33
CACTATAAGCAGTTAT	alt_6030_new	10	9	9	8	10	8	10	6	14	10
ATTGATAGGCAAAGCT	alt_6030_new	15	33	26	23	36	17	39	21	42	24
TTTGCTTTACCATCAG	alt_6030_new	98	203	119	100	216	93	228	97	182	91
ACAAACTTGTGCGGAT	alt_6030_new	5	17	15	19	23	4	26	13	22	8
TATTTTTTACTTAACG	alt_6030_new	16	35	26	13	40	21	33	17	32	19
TCGTAGAGCGTCCTTT	alt_6030_new	1	7	3	3	4	4	3	6	11	4
TGTATGATTGAGAGTC	alt_6030_new	1	3	4	1	4	0	10	3	2	6
TGTGTAGGCGCTTCGT	alt_6030_new	1	3	2	1	2	6	11	1	9	6
TCGTTTTCTGGATGGC	alt_6030_new	40	86	54	45	89	46	113	65	100	39
ATAATGCAAACTTGTT	alt_6030_new	21	38	21	17	49	22	51	16	46	25
GCAATTATTTCCTGTC	alt_6030_new	24	38	35	16	36	16	36	13	43	21
TTCCCTCCCGAGGAAT	alt_6030_new	27	51	31	30	57	22	60	27	47	22
AAGCGTCTTGTAATTC	alt_6030_new	12	26	13	10	15	13	32	7	22	11
CCGTGTATGTGGATGT	alt_6030_new	10	21	19	8	23	9	26	8	36	10
GGATGTTTTAAGTGAG	alt_6030_new	5	17	11	15	11	10	24	5	17	7
ACACAAGTTTCTTTCA	alt_6030_new	34	68	43	36	86	27	94	32	65	26
GCGCTTAGCCTTATGA	alt_6030_new	3	17	14	15	16	9	23	6	12	4
TACATTATATTAAGAC	alt_6030_new	3	12	9	3	12	5	12	2	10	3
AGGTGGCTATCTCAAG	alt_6030_new	9	10	6	3	20	3	12	6	21	12
CTTAGAGTGGGTAGAG	alt_6030_new	34	102	52	46	74	30	86	43	84	41
GCCATGGATTCCATCG	alt_6030_new	4	1	0	0	1	0	3	1	1	0
GCAACTCTGTAGCCTC	alt_6030_new	4	13	5	2	16	10	9	11	12	4
TCGGGCACAAGTTATC	alt_6030_new	17	56	42	26	51	22	55	19	53	20
GAAATCCTTCTGTGAG	alt_6030_new	35	93	41	38	75	20	71	23	78	29
ACTGTGTTTGCGCTTT	alt_6030_new	16	24	22	11	42	16	18	7	32	14
TCCACCCGATCCATAC	alt_6030_new	5	7	4	7	11	7	12	2	17	3
CCGATACTGCGTGTCA	alt_6030_new	12	9	2	5	10	5	9	3	20	7
TGTCACGTTGCGCACG	alt_6030_new	7	24	13	21	26	15	20	8	22	14
TATGTGATATCACTAA	alt_6030_new	1	7	8	7	19	6	6	1	15	8
AGAACTGTCATTCTGT	alt_6030_new	4	33	12	15	21	12	15	11	25	4
AGATTTTCGGGCAGCA	alt_6030_new	43	71	44	46	100	57	88	42	96	50
GTTACGACAGTTATTT	alt_6030_new	0	0	0	0	0	0	0	0	0	0
AATCACGCGGGGCTAG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
ATATGCGCAAATAGTA	alt_6030_new	19	33	30	26	34	22	26	26	54	20
AGATGTATAACTGGCT	alt_6030_new	45	60	43	31	76	34	69	43	74	24
ACCCTAGATCGGCCTC	alt_6030_new	0	0	0	0	0	0	0	0	0	0
AGACTTCGGAGCCATC	alt_6030_new	0	0	0	0	0	0	0	0	0	0
GTCCTTAGCACCTCTC	alt_6030_new	10	35	13	16	36	6	34	11	24	23
GTTTGCAAACCTTCGG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
CCTAACTTTACCGTAT	alt_6030_new	0	0	0	0	0	0	0	0	0	0
ATGCCCGTCCATACTG	alt_6030_new	38	89	51	31	84	43	89	27	59	37
GTCCGCAGGTCTCGGG	alt_6030_new	0	0	0	0	0	0	0	0	0	0
CTTATTGCTACAGTGC	alt_6030_new	12	28	14	21	13	14	15	10	15	6
ACTCGGCCAGCTCAAA	alt_5989_new	76	29	70	63	23	63	19	66	33	55
GCCGCTCCCGCACCAT	alt_5989_new	38	21	50	51	24	39	16	42	21	38
CTTTTAGTTGAGCTGA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CCAGGAGGTACTGCTT	alt_5989_new	74	65	66	61	58	47	81	48	75	39
ATTCGTGCGGAACGTC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
ACAACTTAGCTATCAC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTTGATTCGTCGTCGT	alt_5989_new	51	23	52	48	20	57	24	44	25	41
TGACACTGACTACCTG	alt_5989_new	2	0	2	3	0	4	3	1	0	2
TTACATCTAGTGAAAA	alt_5989_new	132	71	146	168	61	119	60	128	44	125
AATGTCGAGCCGGGTT	alt_5989_new	27	9	23	33	7	25	10	32	12	25
TCAGTCAGTACGCCGC	alt_5989_new	27	10	18	29	10	17	11	20	11	25
GCTTAGTGGCCAGATT	alt_5989_new	17	10	12	19	10	11	6	23	9	20
TTCGGCCCTTTGCCGA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TACTTCGCTGTTCCTA	alt_5989_new	187	57	221	181	66	166	83	168	69	144
GTTGGCTGCATTAGTA	alt_5989_new	194	94	223	189	76	195	78	189	105	201
TTGCACGCGGCGATTT	alt_5989_new	26	13	31	26	25	30	11	23	15	25
TTATTTGATAGTGGCG	alt_5989_new	36	8	39	23	12	37	12	30	18	25
TCCCCCTGGCATTTTT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TGGCTGGGGCTTTATC	alt_5989_new	104	26	118	127	44	119	41	112	38	95
AATATAACGTACCAGT	alt_5989_new	23	6	25	27	5	12	8	27	6	19
CGTTCACTGTCCGAGC	alt_5989_new	11	8	14	10	10	13	7	10	8	12
TATTCATTGACAAGGC	alt_5989_new	95	29	127	111	41	81	45	86	60	86
GCTCGAGGTTCCCGTC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AGGCTTGCTCCATTAA	alt_5989_new	256	117	328	294	105	248	79	249	116	267
CGCCCGCCCCGGCTCG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTTCATCGTATCGGTT	alt_5989_new	36	9	43	33	6	29	11	34	7	23
CACCAGATTCTGATTT	alt_5989_new	21	7	24	35	16	24	10	29	6	12
TATTAATGGTTTAGGC	alt_5989_new	25	18	23	28	8	28	16	25	7	16
AGCTGCTCTAAAGGTT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TACCAGATCTCGCTTT	alt_5989_new	4	3	6	14	9	1	5	8	6	7
CAGCGGAAATATGTCT	alt_5989_new	57	87	65	48	87	59	71	42	86	43
CGGCGCTAACGGTAAA	alt_5989_new	17	17	17	27	5	10	11	17	8	8
CGCCCTCCGATTCTAT	ref_5989_new	19	12	28	16	10	15	13	26	17	29
AATTGGTGGTCCAGAG	alt_5989_new	25	17	33	27	9	32	14	39	14	24
CCCTCTTGAACTAAGG	alt_5989_new	31	17	50	38	22	24	7	25	17	21
ACGATGGTTGCGCCGG	alt_5989_new	56	10	71	65	26	35	21	57	33	54
AATTCGTTCCTTCGCT	alt_5989_new	16	9	20	18	4	15	5	21	9	17
GTCATATGTTTAGTAG	alt_5989_new	0	1	2	0	0	1	1	0	1	0
TACTTGATACTTCCAT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CCCTCGGGGAAAAGGT	alt_5989_new	128	47	159	118	43	123	57	105	48	103
TCGTCCCAGAATTCAG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
AGCTGCGGATTTGACC	alt_5989_new	101	44	151	125	50	113	59	85	46	109
TGGGGGCCCTGTTAAG	alt_5989_new	28	14	49	40	5	28	15	27	20	27
GCGCTGTTAGCACAGA	alt_5989_new	14	9	20	18	9	21	4	20	5	11
TGACCCGTATAAGCTA	alt_5989_new	91	39	95	79	32	71	32	94	34	83
TCTGCCCGGCCTATTT	alt_5989_new	33	16	69	40	22	39	19	41	18	44
CACACTCGTGTATTTA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CGCGAGGGAATATACC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CGGCACGGATTCAACG	alt_5989_new	49	18	63	57	28	63	19	59	30	42
GACCTTAGATATCGAT	alt_5989_new	132	51	160	154	50	141	44	157	51	126
GCTAACCATCTGCACG	alt_5989_new	8	7	10	10	5	3	5	5	6	9
TCACGGTGACGCCTGT	alt_5989_new	22	9	22	11	6	15	13	8	8	7
ATCTAGGAGCAACCTA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CTAATAGGCCCCGAAA	alt_5989_new	23	15	35	26	16	24	11	23	17	27
CCCGGCCGCGCCCAGA	alt_5989_new	184	74	245	188	78	213	81	173	103	166
TCATCGCTTATGTAGC	alt_5989_new	109	41	124	108	42	95	42	98	36	105
TTATTATGGGCAGGAT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CTCTCACATACACTCT	alt_5989_new	156	97	155	151	83	113	83	160	81	140
TTGCGTGGAGGACTGT	alt_5989_new	57	36	77	60	32	80	19	71	31	61
ACTCGCTCTTATTGGT	alt_5989_new	82	68	106	97	46	107	46	97	53	96
ATCCATCTCGGCCGAC	alt_5989_new	61	21	73	78	32	57	28	67	29	61
AGTTGATGTCTCTTCG	alt_5989_new	23	3	22	22	8	10	4	19	4	23
GCCATCATCGCGCTAG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
ACTAAATTGGTCCGTT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
GACCATGGAATAGGTC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CCCGGCGCACATCAAT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
ATGTCATCCGCTAGTC	alt_5989_new	216	132	269	257	107	239	106	227	121	190
GTGTCCTTACGTAGTT	alt_5989_new	21	10	29	36	12	20	12	23	15	23
ACGCAGGATTTTCTCC	alt_5989_new	2	2	2	3	3	1	1	0	2	1
CGTATTTAACGACATC	alt_5989_new	40	13	56	58	16	33	12	57	23	32
CCTTTCTTCGGTATGG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
AGCAGCCTCAAGGGCA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
AAGTGTAAAGATGGAT	alt_5989_new	72	15	101	72	24	80	40	79	41	79
GCTGTATTCGCTCCAG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTCATGATTTCCTTCG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CCTATTTTGAGTTTCT	alt_5989_new	161	85	223	205	86	160	96	173	78	156
CGTTCACTCTCATGTG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CGGCGTAGAATAACTA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
GCTTCACAAGTCCAAA	alt_5989_new	72	28	104	100	34	70	26	67	31	76
CTTATTGGTCTTCGCA	alt_5989_new	143	60	142	158	59	125	51	119	72	120
TCTTCGAAACTGCAGG	alt_5989_new	39	22	52	46	8	37	13	38	17	32
CGACGTGACAGAGCCC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTTCCGGTTGGAGCGC	alt_5989_new	11	27	16	21	22	10	22	12	16	8
TTCACCCGACTTACGC	alt_5989_new	32	24	60	47	28	32	28	29	26	31
GTACCAGACCGGGTCA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
ACGTCGGTTCTCATCG	alt_5989_new	33	15	43	35	15	28	15	49	14	32
TTCTAACAGTATTAGC	alt_5989_new	40	12	58	49	24	32	17	48	22	26
CCCGAATCGCCTCTTA	alt_5989_new	13	3	19	23	12	12	3	20	2	14
AAGCTTGGGATAACCC	alt_5989_new	8	10	18	14	4	12	3	14	5	21
CGAATCGTTCTCTAAA	alt_5989_new	7	3	20	17	10	15	9	23	10	17
TTTAGTGTCAAAATTT	alt_5989_new	30	20	49	41	9	42	11	21	16	29
CGGTCGACCAACCTCA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
GACTCAAGTGCGGTCT	alt_5989_new	56	21	64	50	18	30	12	47	25	52
TACGTATTACCGAGCC	alt_5989_new	130	41	132	132	57	104	59	86	46	117
TTGTCCGAATCACGGC	alt_5989_new	6	11	5	5	21	2	11	3	16	3
CGCAGTGCTTAGCACT	alt_5989_new	11	7	5	5	4	7	6	6	4	12
TCTAACATCGCCACAT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
GCCGTAGTCGTCTGCC	alt_5989_new	231	136	314	324	160	217	151	271	181	207
CCGAATACCTCGGATG	alt_5989_new	1	0	1	3	0	1	0	0	0	0
TCCGTTACAAGAAAGA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTGGGCACTCAGTTTT	alt_5989_new	66	14	68	56	25	44	21	45	19	44
TTGGTGTACGTGGCCG	alt_5989_new	84	41	161	89	33	121	39	108	62	99
GTGTAATCATCTGGAT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
GCACAATATCTTCTCT	alt_5989_new	44	12	31	28	11	25	7	23	13	25
TTTGAGTGCTTCGAAC	alt_5989_new	50	32	44	46	25	38	26	37	19	42
CCTCATTTGTAAGCTC	alt_5989_new	20	11	34	19	8	22	8	22	11	22
GACCCCCAGAGGCCCG	alt_5989_new	168	45	185	150	31	127	61	132	51	135
AAAGCGTGGCTAAGTA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TCCCGAGTGGGCGTTA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TAATGACTGTCTTCCG	alt_5989_new	88	30	102	98	23	99	29	90	38	87
CATGATTCCCGCACTG	alt_5989_new	255	101	311	321	110	245	102	269	123	244
GCCGTCGAGGGGTATT	alt_5989_new	16	8	20	22	14	16	12	21	15	19
TCTTGATGATGAAATT	alt_5989_new	90	27	121	111	42	101	50	79	38	101
AAGGGCTGATGAGTAC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTTCTAGTACTTTCAC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CTAAAATAACACCAGG	alt_5989_new	247	122	293	257	118	240	120	255	119	238
TACAAGAGTAGAGTTG	alt_5989_new	1	0	0	0	0	0	0	2	0	1
TGACGAGGTTGTGCAC	alt_5989_new	56	19	67	62	21	46	25	52	22	54
CGTTTGTATACAACTC	alt_5989_new	54	26	63	68	14	38	28	52	16	42
GATCGGGACAAGCCCA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
GGGATAATCCACAACG	alt_5989_new	76	13	84	60	15	49	22	50	22	42
GGGCAACAATACCTTG	ref_5989_new	204	92	262	231	87	193	116	209	104	175
GCACCGATTTAGACTA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TGTGCGTCTCGTCACC	alt_5989_new	70	24	60	82	33	70	37	86	36	63
GGTACCAAGGCGATCG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CATTTGGTCGCATGTT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TGTATACACCATTTGT	alt_5989_new	4	4	9	8	3	10	2	8	6	10
ACGCATCGTGGGTGGA	alt_5989_new	141	52	187	144	59	159	63	153	56	141
TGTTGATTGAGACACT	alt_5989_new	199	82	227	239	77	170	105	180	93	157
GGCAGAGCGTCGTGCA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
AAGGCGGTGCTGGCTT	alt_5989_new	212	78	275	228	91	249	99	188	92	201
TATTCGTATTCCCCGT	alt_5989_new	17	14	20	16	25	10	26	14	29	20
ATTACTTTTTTTAACA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TCACTTGCGCTTTTTA	alt_5989_new	45	16	49	58	13	28	10	38	14	34
ATCGATGTGATCTTAC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CTATTTGTATGTGCGA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTCTAGATTTCTGCTC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TAGTCGAAGCCAGTTA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TATAGGGAATGTGCAC	alt_5989_new	56	16	62	43	35	58	21	35	24	47
TATTCGAGAGGATTGG	alt_5989_new	0	0	0	0	0	0	0	0	0	0
GGATGCCGATGAGGAC	alt_5989_new	0	0	0	0	0	0	0	0	0	0
AACGCATTCTATGGCA	alt_5989_new	11	15	21	19	4	12	6	17	9	11
TAATTGCGTTCGATAA	alt_5989_new	0	0	0	0	0	0	0	0	0	0
CCGTCCGAGTACTCAT	alt_5989_new	48	17	78	65	30	44	37	66	21	62
CGACCTTCCTATTTAT	alt_5989_new	0	0	0	0	0	0	0	0	0	0
TTCGGCGGTCTCATGG	alt_5989_new	572	211	669	531	208	493	251	469	209	428
CTCTGATCGCATGGTG	alt_5989_new	125	50	166	124	47	98	46	118	55	102
GTCCGCAGTTTATGGA	alt_5989_new	62	33	65	71	44	62	27	50	38	60
CCCGCTAGGAAGTGAA	alt_5989_new	21	9	45	22	5	35	8	20	13	17
GAATTATATGGTTTCC	ref_904_RC	358	37	382	343	30	314	46	284	39	301
GGTTATATTTTTAAGA	ref_904_RC	859	94	1056	920	109	767	107	813	131	732
CACGTGTGTCTAGTTT	ref_904_RC	177	25	204	138	41	139	24	170	27	154
GTCGCACCGTTAGCCA	ref_904_RC	50	4	40	52	4	34	5	35	5	45
AGGCAGATCGCTGCAT	ref_904_RC	886	107	1016	852	102	873	122	886	121	827
CCGGGCGCGAACTTTC	ref_904_RC	478	54	588	511	72	451	61	490	71	456
CTGGTAGCGAGTGCTC	ref_904_RC	194	23	221	234	15	212	29	186	25	196
CATTAGTTAAAATATA	ref_904_RC	418	54	482	378	54	369	50	379	40	364
ACCTATACGAGGCATG	alt_904_RC	5189	618	6121	5232	627	5025	648	4877	675	4536
TCACTCGTACTCGCGA	ref_904_RC	0	0	0	0	0	0	0	0	0	0
AGCGACACGGGGCCGT	ref_904_RC	99	15	149	106	19	107	11	116	9	102
GTAATCACTTAGCAGG	ref_904_RC	329	47	453	392	42	359	43	311	66	306
CATGGGCGATAAGATC	ref_904_RC	0	0	0	0	0	0	0	0	0	0
CTCTATTGCCCAGGGT	ref_904_RC	87	8	85	80	8	75	11	72	19	61
GCCACAACGCCGCTTT	ref_904_RC	567	100	705	647	120	579	137	545	113	499
GATTTCGTTCGAATTG	ref_904_RC	0	0	0	0	0	0	0	0	0	0
ACCTAAACGAGGCATG	ref_904_RC	2	0	1	0	0	0	0	1	0	1
CCGGCCCTTGGTATCT	ref_904_RC	958	106	1195	1070	103	952	127	883	140	845
AGACCTCTCTGGGCCT	ref_904_RC	0	0	0	0	0	0	0	0	0	0
ATGCATAGTTCATGAT	ref_904_RC	290	32	357	273	43	321	50	306	49	273
GATCTCGCCAGTTCGA	ref_904_RC	625	81	700	671	72	545	88	617	69	581
TGATGGAAACTACTGG	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TAGGTGGAAGGGTGTC	ref_904_RC	390	52	488	389	44	346	51	369	51	319
TTTCAAGTCAAGTACA	ref_904_RC	1158	168	1403	1212	138	1037	168	1124	171	1034
TATGTGCACCTTCTCT	ref_904_RC	376	51	426	365	49	329	51	407	59	331
CATTTACTCCTCCTAT	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TCGGTGATTAATCTAA	ref_904_RC	590	77	720	650	80	569	74	546	57	567
CTTGGTTTTGTTGTTT	ref_904_RC	336	57	398	415	60	388	47	339	61	327
ACGATAAAAGCAAGAG	alt_904_RC	186	39	230	182	35	155	50	147	42	144
CGTGTACGCTCAGTTA	ref_904_RC	0	0	0	0	0	0	0	0	0	0
ATGGAGTCAGGTTATG	ref_904_RC	0	0	0	0	0	0	0	0	0	0
AATACTTGGAATGATT	ref_904_RC	623	91	779	689	97	605	85	610	57	579
ACCGAGGTAGTCTTCA	ref_904_RC	115	11	120	124	17	103	17	113	17	112
GTCTGGCTCCAGTTCC	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TCCAGCGCATTGTATC	ref_904_RC	140	38	248	208	35	183	43	229	45	169
GGGGTAGCATGTTGAT	ref_904_RC	171	12	186	159	20	149	18	158	19	120
TTATTGAGGCTATGTA	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TATGACTGGATTCTTA	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TTTTGATGCGTTTGTT	ref_904_RC	1021	133	1287	1049	155	1009	145	1050	143	889
TACACGCTGACCGGCT	ref_904_RC	85	11	96	88	14	77	16	78	8	71
CGTACTTTACTCTGTC	ref_904_RC	380	47	353	368	60	301	50	340	60	308
ATGACATGAGACTCGC	ref_904_RC	2134	277	2548	2211	273	2068	318	2006	319	1865
TGCGTGCTCCCGGTTA	ref_904_RC	156	19	185	177	10	157	21	147	25	139
CCTTCAGGCCCGTTGG	ref_904_RC	246	51	299	235	78	197	70	218	86	229
GTTGTGCGTTTCGATG	ref_904_RC	0	0	0	0	0	0	0	0	0	0
CACATATTTCCATGGC	ref_904_RC	726	86	867	683	96	723	89	703	81	644
GTCGTACAAACTGATT	ref_904_RC	687	74	899	729	88	595	103	674	92	646
AACCCGTCTTTCTCCG	ref_904_RC	759	141	870	819	180	678	171	719	168	631
GACTTTTGCTCACTAA	ref_904_RC	0	0	0	0	0	0	0	0	0	0
CCTCGATTAGGACCGG	ref_904_RC	964	139	1199	961	159	876	146	886	151	819
ATACTCTCCCGTCCCG	ref_904_RC	5	4	8	7	6	9	11	11	3	3
TCGCAGTCTAACCGAC	ref_904_RC	0	0	0	0	0	0	0	0	0	0
CTTTGGACTGTCATGC	ref_904_RC	15	4	22	31	1	21	4	14	2	21
CCGCACACACGTATTC	ref_904_RC	39	6	36	33	3	26	5	33	2	22
TCATTCCTTTTTCGTA	ref_904_RC	1444	154	1813	1497	183	1521	171	1390	179	1331
TGGTTTCATTGGTCAT	ref_904_RC	471	64	645	574	84	521	68	472	77	514
GACTCATCGCTCTCAC	ref_904_RC	361	48	395	327	40	276	50	340	53	295
GATTTGTTTCCTACGC	ref_904_RC	1326	172	1665	1485	143	1302	194	1254	170	1240
CTGGGGATTCTTAACA	ref_904_RC	33	5	41	34	4	24	2	23	2	21
ATGAACAGTATCGCCC	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TGGTCTACGACGAGCA	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTCATATTATTA	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TGGATGTTAACACACC	ref_904_RC	911	108	1101	1032	115	907	114	866	116	910
ATCCCTAGAACAGACC	ref_904_RC	598	77	618	632	94	556	81	540	76	536
AGTTTAAACGACGAAT	ref_904_RC	689	84	808	755	97	744	90	683	114	660
CTCCTACCCGCATGTA	ref_904_RC	276	42	350	294	36	280	54	276	58	246
GCTGACTTATTATCGC	ref_904_RC	0	0	0	0	0	0	0	0	0	0
ATATGTTCACGGCTGC	ref_904_RC	387	43	498	422	45	396	48	375	59	386
GCATCGAGCATGTTAA	ref_904_RC	615	88	756	740	69	636	75	604	67	571
GCCCGGGCTGTTGAAT	ref_904_RC	0	0	0	0	0	0	0	0	0	0
CACCGCAGTTCTTATT	ref_904_RC	0	0	0	0	0	0	0	0	0	0
TCCTTAAGTACATGCT	ref_904_RC	240	34	316	296	30	295	42	252	30	202
ATTAAAGGATTAGTAT	ref_904_RC	1052	103	1239	1102	115	971	127	940	128	931
TCTGTTAATTCGATTT	ref_904_RC	406	49	478	370	49	461	43	333	44	380
TGACAGCAGGGTCCTG	ref_904_RC	157	18	183	153	23	167	19	155	33	119
GACACATATATACTAA	ref_904_RC	1291	138	1494	1227	146	1167	143	1208	157	1193
GTTGTGGTCGACCAAA	alt_4116_reverse	12	20	8	7	36	8	27	7	34	4
TGACCTACCTGATTCT	alt_4116_reverse	33	196	38	26	212	23	213	20	205	28
TTCTGTCCTGCTCTGG	alt_4116_reverse	7	6	10	7	13	6	8	8	14	4
TAACGTGATTTGTGTC	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
TCACATTACTCAGGCT	alt_4116_reverse	13	15	15	15	18	15	22	13	21	9
AGAACGGACGCCAGTT	alt_4116_reverse	4	12	7	6	11	11	10	5	16	7
GCGGAAATTGCCAAAG	alt_4116_reverse	7	6	7	5	7	6	6	3	8	2
CTTGAACATTTTTGAT	alt_4116_reverse	18	64	36	18	58	42	47	33	69	24
GGTTTAAGGTACTGTC	alt_4116_reverse	56	109	44	50	108	54	99	50	104	37
CTTGAGTTGCACACCT	alt_4116_reverse	8	14	9	4	15	4	9	7	12	6
CCCCCACGGATCTTCT	alt_4116_reverse	23	91	32	17	73	19	80	24	95	12
GGCTTTTGTCTTATCT	alt_4116_reverse	104	133	135	115	154	120	150	101	151	90
TTTTAGGTCTCTGTCT	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
CATACGAACTTCTCTC	alt_4116_reverse	7	11	13	9	30	4	12	7	12	12
TCTGTGGTACTCGGTG	alt_4116_reverse	112	182	92	80	162	93	177	88	197	74
CGCGTTCCTAGCCCGG	alt_4116_reverse	63	76	56	51	70	47	99	53	119	35
TGAGCCATTCGAGTGG	ref_4116_reverse	3	7	7	0	4	3	3	1	7	1
GGTGGCCTCAGTGTCT	alt_4116_reverse	27	47	24	27	46	21	53	23	38	27
GCTACCCCTGCACACT	alt_4116_reverse	2	6	2	6	7	2	7	3	11	3
GTGCTTTTGGGATGCC	alt_4116_reverse	5	11	7	6	7	7	10	7	8	3
GTTACCTACAGATTAC	alt_4116_reverse	5	10	1	9	10	2	15	4	10	5
ATCAGTCGTAAGTTTG	alt_4116_reverse	7	11	3	4	8	5	9	4	8	7
GTTTAATTTTTGTTGG	alt_4116_reverse	13	7	9	4	14	7	13	4	11	7
TTTCGGTACGGTAGTA	alt_4116_reverse	1	3	5	3	11	2	6	2	5	4
TTATCGCATTCGTTCT	ref_4116_reverse	26	40	39	17	39	28	44	21	36	22
GATCTGAAAACGCATC	alt_4116_reverse	17	34	22	13	28	16	28	13	36	13
CTTTCGTGCTTGGCAC	alt_4116_reverse	21	46	24	20	43	22	61	14	41	12
TTCTGCAACACCATCC	alt_4116_reverse	86	158	121	82	159	75	163	94	170	80
TCTTGTGTTTATGGCG	alt_4116_reverse	3	11	10	5	14	2	8	5	5	5
ATTTGTGCGATCCGTT	alt_4116_reverse	86	112	74	74	150	108	138	72	140	70
CACAGCCTCACTGTTG	alt_4116_reverse	18	63	31	25	64	25	100	22	90	22
TGAGAACACTGCTCGA	alt_4116_reverse	3	5	15	7	10	6	4	4	10	5
TCAACAAATGGAGTAC	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTTACAAACATAC	alt_4116_reverse	34	69	54	32	60	34	55	48	59	31
GGGGATAGATTGGGAG	ref_4116_reverse	70	118	68	68	119	67	113	66	120	66
CGTGATTAGACTTTTT	alt_4116_reverse	2	8	4	1	7	0	1	5	7	4
CGGGCTAGGCATAAGT	alt_4116_reverse	0	1	0	0	0	1	0	0	0	0
CCACTATGGGAATACG	alt_4116_reverse	66	74	52	55	75	57	85	56	108	59
GTACTGTTCTCCATGC	alt_4116_reverse	18	33	27	34	52	19	35	19	41	18
AAACCTGAGGTGGGCT	alt_4116_reverse	15	23	20	9	30	24	22	15	26	10
AGCCATAAAAGCCAAG	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
AATAGCGTTACTGCGC	alt_4116_reverse	18	34	10	13	22	13	21	4	24	12
TCAATGCGTCAATTTT	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTTTGTGGAGCCC	alt_4116_reverse	44	74	48	44	65	54	80	31	77	34
CTGTGAACCGTCCAAC	alt_4116_reverse	104	194	124	128	215	99	208	95	259	91
TCTATACTGATGCACT	alt_4116_reverse	32	74	34	29	45	27	50	37	50	31
TTAAAGTAGCACTCAA	alt_4116_reverse	7	13	8	9	16	8	14	10	15	6
TTCCCGATTCTCACAC	alt_4116_reverse	21	38	20	21	30	23	43	27	40	6
CATCTCGCTCAATTTT	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
CTACTAGGCCTCCTGT	alt_4116_reverse	14	58	24	19	81	16	82	15	71	15
AGGGTAACAAACATAC	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCGGTGTACCGTA	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTAGTGAGAACCA	alt_4116_reverse	33	68	35	40	65	36	69	43	78	32
AGTCTCCATGAATGTG	alt_4116_reverse	33	74	47	20	92	34	66	23	80	33
TGTCCATATGTACTCA	alt_4116_reverse	7	17	8	4	11	8	11	6	15	8
TTTTTGTGGTTTTTAG	alt_4116_reverse	35	31	24	24	40	19	48	14	58	22
TAAATGGACTTCGCTG	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
ACCTATATCAGAAATG	alt_4116_reverse	10	27	19	14	26	16	23	10	37	14
GTGGTGAATATCGCGA	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
GCATTCTGATATCAAT	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGGGGGTAGTGGA	alt_4116_reverse	36	43	42	30	56	24	59	31	52	25
AAGGTCTGTGAGGGAC	alt_4116_reverse	11	11	8	4	22	12	30	11	20	7
TTCATGTTAAGGCACT	alt_4116_reverse	12	42	24	27	35	18	56	19	49	19
GCATCAAGCGGGTGTT	alt_4116_reverse	26	50	43	39	56	26	58	28	49	21
GAGTTTTTCCGGTCTC	alt_4116_reverse	39	63	38	32	57	35	62	36	78	22
GTCGTTCAGTATGTAT	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
TAAACGGCCTTCTCTA	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
CGCACGACCGTTTTCT	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTATAGCTCTCTC	alt_4116_reverse	3	1	6	1	4	0	1	0	3	4
AGTACGTATTTCAGCC	alt_4116_reverse	60	121	70	69	124	61	117	54	152	61
TGTTCCTTTGTCTAGT	alt_4116_reverse	2	8	4	5	6	6	8	5	8	3
CTGAGACACGGTTCCA	alt_4116_reverse	32	40	32	22	38	10	37	24	41	28
TGAGCTTTTACCGCGG	alt_4116_reverse	56	85	65	56	84	54	112	55	112	50
TGTTCCTTTATCACTC	alt_4116_reverse	8	20	10	7	15	11	15	8	20	4
TATCCAGTCGGAAATT	ref_4116_reverse	53	74	52	49	72	57	79	39	81	37
TAGACTCGTTTGTCAA	alt_4116_reverse	58	71	77	60	56	77	71	48	87	58
GGATCAGGGGTCAGGA	alt_4116_reverse	66	70	85	42	98	53	86	57	109	59
CTGATGCAGTGTTACC	ref_4116_reverse	83	251	103	105	263	75	289	87	307	84
GTTTATTCCAGACCTT	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
TGCTATTTAGTAGACC	alt_4116_reverse	4	9	2	1	7	4	4	6	9	5
AAGGGAACAGGTCCTT	alt_4116_reverse	20	39	13	19	32	20	40	23	24	19
CTCTTCAAAAGATGTT	alt_4116_reverse	13	15	9	13	20	10	29	8	16	10
CGAAGGATTCAGCTAT	ref_4116_reverse	40	54	38	42	50	34	63	37	73	34
CAACATCATACGAAAA	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGCAAATGGTCGC	alt_4116_reverse	24	50	33	30	51	17	51	22	45	17
TCCGTTCTTCTTATCA	alt_4116_reverse	45	70	76	56	77	75	88	43	78	45
TAGGGCCCGTAGTGGA	alt_4116_reverse	102	178	114	106	177	104	173	108	201	80
CGACGACATCGGCGAA	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGTTATGCGCCGC	alt_4116_reverse	0	0	0	0	0	0	0	0	0	0
ATGATCACCAGACTTA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TGATCCCCTATCTTAT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GTCTTGTCGACACAGT	alt_5403_RC	308	49	382	305	44	293	61	284	60	261
ACTAACTGCCAGTCTA	alt_5403_RC	84	9	87	89	6	74	12	84	10	81
TGCCGCTAACATGTCT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
AGCTAGTCTAATTTGT	alt_5403_RC	341	74	361	302	61	321	72	334	72	287
AGAAGGTATAGACCGT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GCAACACCACAGTGGT	alt_5403_RC	232	35	267	265	57	234	58	218	52	230
ATAGCGTTCAAGTGTT	alt_5403_RC	295	69	356	313	39	303	60	251	54	237
TTGGTAAGAATCCGAG	alt_5403_RC	497	84	753	533	70	509	76	535	84	451
CCGTCTAGCCCCCCCT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTTCGGTGTACG	alt_5403_RC	179	30	252	211	21	190	42	165	42	183
TTCAACTCTCTTAGTC	alt_5403_RC	216	48	277	200	28	180	36	178	53	175
GTCGCGGTAACTTATA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TGATGAATTTGCACTC	alt_5403_RC	258	29	281	218	44	209	43	250	34	236
CTCCCCAAGTCTCCTT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CCACGTTGCGTGAAAA	alt_5403_RC	255	77	379	336	56	228	60	317	67	241
GTCTTATTGATCTCTA	alt_5403_RC	120	20	172	114	11	143	18	157	23	116
GGTAATGCGCACATGC	alt_5403_RC	571	105	787	684	96	615	113	587	101	540
TTTATTCTTGCTAAGG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GTTCGCCGGAAAGTAG	alt_5403_RC	38	6	46	43	6	41	7	45	5	41
CTTGCACTTCTACGCA	alt_5403_RC	202	37	220	204	24	177	23	179	36	153
CTCTTGGAAGCCGCTT	alt_5403_RC	124	29	183	191	29	166	25	156	38	155
TCTTTACGAATCATCC	alt_5403_RC	248	46	311	278	35	246	44	273	31	232
CCACAGCACTGCGTAT	alt_5403_RC	130	27	151	150	22	121	27	128	20	130
CATTGGGGTTCAACGT	alt_5403_RC	1256	203	1437	1361	191	1211	189	1101	237	1031
CCTAAAATCTTACGAG	ref_5403_RC	879	164	1079	929	139	811	138	822	137	770
TTTCTTAAGCGCCTAC	alt_5403_RC	123	29	157	120	21	132	16	132	9	136
CCAAATTCTAGCGTCT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TCAGTTAATTCCTTCG	alt_5403_RC	672	117	834	690	135	583	116	671	113	604
ATTGATTTATCGTTCG	alt_5403_RC	42	7	45	40	5	41	9	35	12	29
GTACCGGAAGGGATTC	alt_5403_RC	113	18	136	125	29	117	23	121	14	104
CTTGTCACTACGTCTC	alt_5403_RC	102	13	108	109	22	81	13	88	17	74
TCAACGTCGGTGATCA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
AGTTCCTACCGCGCTC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TCCGCTTAAACTCACT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GTCCTCTAATCATAAG	alt_5403_RC	12	3	34	19	4	20	4	15	7	22
CCGGAGCGTAAGACGC	alt_5403_RC	452	73	505	504	72	421	63	454	89	404
GGTTTCTCGTCACCAA	alt_5403_RC	332	46	400	354	57	303	41	294	66	283
ACCTGTATGTGTGATG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TACGTTATCTCATTTG	alt_5403_RC	70	11	94	69	12	70	11	70	15	70
AGGCTTTCATCCCGGC	alt_5403_RC	370	56	411	362	58	360	60	360	54	336
ACGGCAAATTTTCTAC	alt_5403_RC	597	84	682	632	72	529	93	485	116	490
TTGAGTTCTCTTAGTT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
ACCGTCCCCTAGAATT	alt_5403_RC	25	8	41	14	8	16	5	22	11	17
AAGCGCCCCCTTCTTT	alt_5403_RC	190	23	216	193	29	137	20	180	17	147
CTCTGCGTGTTGTTCA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
AGTTACTTCATTAATC	alt_5403_RC	539	84	609	591	70	506	70	498	76	449
CAATTTACATTTTAGT	ref_5403_RC	311	62	406	361	44	309	67	322	62	294
GTATTCTACGTAGCAA	alt_5403_RC	150	19	188	152	22	133	26	148	15	124
CTCGTCTTAATGGTTT	alt_5403_RC	339	47	508	402	61	382	58	366	56	305
GCGGCATTGTAGTGAT	alt_5403_RC	321	46	420	320	45	289	58	327	37	320
GACTGATCAGATACCT	alt_5403_RC	43	5	37	34	5	36	6	40	6	32
GCTGTCTGCGTAGTAC	alt_5403_RC	23	4	27	27	5	25	6	17	5	19
TTTTCTTCGTTACGTC	alt_5403_RC	706	101	877	766	133	782	110	709	119	641
TCCTGGCAAGCGCGTT	ref_5403_RC	272	30	332	274	30	264	19	268	32	255
TCGTCTCTCAAATATA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTCTTCTTGAGT	alt_5403_RC	304	50	403	362	52	314	41	340	49	311
GATTGCACTAAGTATC	alt_5403_RC	8	1	12	9	2	10	3	12	2	10
AGACTAATATTGAGTC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TGTTAGAGTACCACGG	alt_5403_RC	210	31	233	200	36	185	36	195	36	188
GCCGCTCTTACCTCAT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GAGCTTGATTTGAGTG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TGGTAGTTTGCGTGGT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
AATTCTTACGCTATCA	alt_5403_RC	1222	160	1516	1336	151	1105	190	1033	188	1013
TTTCCGATGCTCTCCG	alt_5403_RC	587	76	703	627	106	542	91	612	83	564
CCCAAAAAGCCCAAAT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CTAACAGCTAACCAAT	alt_5403_RC	322	47	399	309	43	303	63	317	55	305
ACAGCTTCGGTATAGC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GCTGGAGCGCACCCGG	alt_5403_RC	150	30	208	130	20	140	34	136	32	145
ACCCGGACAATTCTCA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GCGTTGTTTTCGCTCG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
ATAGTCGTTTTTATTT	ref_5403_RC	110	10	130	110	20	96	26	98	32	89
ATTGTTCAGTAGGTGC	alt_5403_RC	260	47	255	251	39	228	21	234	39	177
TCACTCGCCCGGGTCA	alt_5403_RC	9	5	10	4	10	13	4	17	5	7
CCGAGCGTTTCTCGGC	alt_5403_RC	854	137	950	839	130	804	117	798	157	795
ATATTGTGGGGGCTCT	alt_5403_RC	689	78	795	684	97	698	93	645	80	608
TAACGGGACAGCAGCC	alt_5403_RC	107	9	104	89	13	80	14	77	6	87
CTTTACAGCATTTTAG	alt_5403_RC	273	49	352	309	34	265	42	283	49	267
ACTCGCCATGTAGTGC	alt_5403_RC	187	51	187	153	47	148	41	176	68	143
TTGGCATTGACCTCGA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GCCCGGAACCTATATC	alt_5403_RC	52	7	89	68	11	64	9	58	7	42
TAGTGATCATCATGAC	alt_5403_RC	311	50	325	264	39	308	39	292	56	305
CTGTGGCATTCCAGGG	alt_5403_RC	4	0	7	11	1	5	0	12	5	1
TCCCGATAGGATATGG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GGCGTCGGAAGGGGTT	alt_5403_RC	254	33	291	237	44	233	36	204	46	224
ACGCTCTCCGTACGGT	alt_5403_RC	188	29	239	203	36	208	37	188	49	180
GCGAGTCGCATGCCAC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TCCTTTTCATGTTCGT	ref_5403_RC	1066	129	1332	1108	128	1084	174	776	149	954
CACCGCTACCTTCAAG	alt_5403_RC	84	16	135	123	16	103	24	129	26	93
CTGGATAGTCGACTTT	alt_5403_RC	38	6	40	38	5	46	7	42	8	32
ACATTAGTATGCTAAG	alt_5403_RC	302	49	346	284	55	246	37	280	46	238
CCCGCCCAGATCATAG	alt_5403_RC	4	2	5	4	0	0	2	1	1	2
CTTACTGTATCAGCAC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CGGAAGTATGCTTGCA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTTCCCTTTCTA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
ACGCATGGGATTACAT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TATTGTTGCGGCGCTT	alt_5403_RC	115	14	112	121	19	92	8	90	16	83
TCCACAAGGATGCGTT	alt_5403_RC	260	46	337	268	41	244	28	227	44	221
GTGCTTTGATCTTTGG	alt_5403_RC	366	56	499	408	71	331	60	357	66	300
ATTGCCGACCGGTTTG	alt_5403_RC	113	14	122	82	12	96	15	74	14	52
CCCCTATCTAGCGATC	alt_5403_RC	326	50	465	369	48	354	57	322	52	308
CCCGAATCGCTAAAGT	alt_5403_RC	77	8	129	66	8	87	13	87	7	77
AGCATTGCGCGTACCG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CAGGTCAGTACATGCT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CCTCAACTGGTTGTTG	alt_5403_RC	4	2	2	5	5	3	6	4	3	0
TAGCAGTCTTGGGTAT	alt_5403_RC	124	30	157	158	27	110	35	142	28	111
ATTTTGACTGATGAAT	alt_5403_RC	690	124	841	714	128	637	134	699	137	657
AGACGCGCCTTTCGTG	alt_5403_RC	0	0	1	0	0	2	0	4	0	0
TGCTCTAAGAATCCCC	alt_5403_RC	624	98	821	677	97	645	123	565	98	587
ATATATTAGGGTCGCC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GGAACAGTTATGGTTA	alt_5403_RC	185	34	260	226	28	197	27	201	41	179
GGAGCTACGCTACCTC	alt_5403_RC	177	27	233	211	31	198	33	168	33	173
ACATGCATTGATTGCA	alt_5403_RC	383	60	451	400	47	350	77	355	77	318
TACGCATCCTAATGTG	alt_5403_RC	61	5	55	54	5	55	7	48	16	53
TCAACGATCAGTCATA	ref_5403_RC	1812	299	2254	2034	291	1848	343	1818	335	1681
AGATGCGAGACACATC	alt_5403_RC	201	42	253	226	28	179	39	151	27	157
CGACAATGTCGTTTTT	alt_5403_RC	1492	297	2064	1737	300	1563	308	1563	274	1430
CAGTCGGAGGTACGCC	alt_5403_RC	267	41	306	271	44	264	44	250	44	255
TGTCTTGCTGGCCCGT	alt_5403_RC	73	17	93	92	12	71	18	83	13	64
GATATGTAGCGTGTGG	alt_5403_RC	118	18	158	140	19	121	28	120	22	139
TTGAAGGCGTTATCGG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GAACATTCAATTATCC	alt_5403_RC	446	69	600	564	81	481	76	496	75	478
ACTTGCCTGTTAATAA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CTCCTGTAAAGTGAGG	alt_5403_RC	314	44	372	313	59	327	39	316	68	262
GCGTCAAGTGCGCGGA	alt_5403_RC	131	16	162	117	18	128	20	100	22	104
ATCCGATCAGGCCAGT	alt_5403_RC	118	21	104	101	22	78	31	113	24	73
AGACCACCCGCGTAAT	alt_5403_RC	304	40	408	326	69	260	59	280	53	268
ACTGCTCTTCCCTGTG	alt_5403_RC	35	5	70	51	11	45	6	55	11	35
GTCTAGGCCTATGGTC	alt_5403_RC	24	0	19	17	7	18	5	18	3	13
TATGTGGCTGCCAGCC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
ACACGCTTGCGAACGT	alt_5403_RC	6	1	15	9	0	3	0	7	0	6
GTATCATCTGGGGCGT	alt_5403_RC	151	25	192	147	15	128	8	136	19	128
TCGCCTTATCACGTTT	alt_5403_RC	255	45	323	271	42	276	32	274	35	216
GGCTCCTTAGGCCTCT	alt_5403_RC	335	50	383	325	47	306	50	337	43	289
ACATAGTGCTGGAAAG	alt_5403_RC	33	2	44	36	6	36	8	26	6	26
TGCTCTGCTTGGCGGG	alt_5403_RC	274	37	369	286	52	273	39	289	46	300
TTATTTGACCAATCGA	alt_5403_RC	58	9	66	97	10	80	17	65	10	75
TATCGAGGTAGGACAT	alt_5403_RC	317	47	396	353	54	285	46	317	58	254
CGTCTTAATTTCCCAT	alt_5403_RC	15	1	15	21	1	12	1	16	4	19
TAGCAGGCCTTATCCC	alt_5403_RC	82	12	93	70	10	80	17	72	13	78
CCGATTAAGCTCCAAC	alt_5403_RC	29	11	70	48	9	41	11	44	14	36
CTGGAGTGCCTCTAGA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
ACACAACCTGAGTCCT	alt_5403_RC	135	25	152	135	18	123	24	104	14	119
AGCACTGTCCGTCGTT	alt_5403_RC	542	122	696	634	107	581	122	542	131	483
ACGTCGACTGAGTTAT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TTTTTATCATCAACTG	alt_5403_RC	331	39	358	299	42	304	58	273	38	249
ACCTCCAGTCCACGCG	alt_5403_RC	108	29	108	104	42	81	46	102	49	89
TTTACACCAAGGACCG	alt_5403_RC	125	14	144	134	18	102	15	109	16	98
ATGCATCTGTTACATT	alt_5403_RC	375	54	464	423	65	364	59	352	55	305
TTGCCGCCAAGGATAT	alt_5403_RC	7	1	9	9	0	8	0	7	0	6
CAGCAACTTTGTCAGA	alt_5403_RC	120	22	195	146	25	124	22	139	26	129
TAAACTGTCTTGGACC	alt_5403_RC	154	22	196	189	24	162	25	144	31	150
AGCCTCTACCTTCCGC	alt_5403_RC	169	22	225	199	19	164	18	180	25	140
CAGTCGATCACAATAC	alt_5403_RC	494	70	554	480	76	490	65	454	91	449
TATAGAATGCCGGCTG	alt_5403_RC	53	8	68	50	10	41	9	58	11	41
TTTAGTGTAGGGGGCT	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
AGTGCCTATATTAAAC	alt_5403_RC	58	10	85	85	7	59	13	42	4	64
AGCCTCCGTGCATCCT	alt_5403_RC	236	33	285	247	32	230	30	205	45	210
TAGCACACTTCGCGCG	alt_5403_RC	26	40	49	45	47	38	39	52	40	30
ACTTGGTTCCTAGGGT	alt_5403_RC	45	2	39	40	7	55	3	35	5	26
TATGGTTTCAAAGGGT	alt_5403_RC	128	26	202	156	12	140	20	107	20	122
GTGGGAATGGTTTTTT	alt_5403_RC	223	42	303	235	42	232	50	242	56	185
TGGGTCCAGTTACCCG	alt_5403_RC	638	101	727	555	70	588	103	471	105	484
ATGCACGTGATCTAAT	alt_5403_RC	298	44	358	302	51	300	55	293	53	293
ACGACATATGAGTCCC	alt_5403_RC	444	46	584	488	62	440	61	427	65	378
ATTAGCAGGAAGTACA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CTTACTCTGAAGTCAT	alt_5403_RC	10	1	18	10	3	8	2	15	1	10
TTGTTTTGACATATTG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CATAAGCTTCCGACTA	alt_5403_RC	227	29	241	218	46	205	40	199	37	187
CAGTGCCTCATTCTAC	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
CCGACGCATTTGACGC	alt_5403_RC	90	27	139	118	18	107	21	97	17	88
TCCCGGACAATTCTCA	alt_5403_RC	93	24	186	170	31	117	36	150	22	99
GCCGTTCTTTGGTTCT	alt_5403_RC	219	32	298	219	33	230	36	221	29	191
GGAAAACTCTGAGTGT	alt_5403_RC	202	19	268	204	36	164	36	179	23	153
CTGTAGGAATTTAGCG	alt_5403_RC	2	0	3	3	0	2	0	2	2	5
GGCTCATCGCTCAGGG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TCCCGCTGTCTCATAT	alt_5403_RC	247	30	298	217	25	248	36	176	29	200
CATATTTTTAGATGCG	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGCGACCGTCGC	alt_5403_RC	0	2	0	3	2	1	1	2	3	1
CCCGCTGTCGATCAAT	alt_5403_RC	155	44	164	117	32	125	41	113	30	118
GTGCTACCATGCGACA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
ACGGTAGTGGTAGGTA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
GCCCGAAGTCAGAAAA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTCCCGTTGATA	alt_5403_RC	423	52	458	445	62	355	74	407	79	378
CATCTCTGTCCGAGGC	alt_5403_RC	28	7	32	28	4	27	2	27	4	25
TTGGCGTCCTACGGTT	alt_5403_RC	1084	206	1330	1156	207	1066	220	1005	192	956
CAATGCTTGTTAGCGT	alt_5403_RC	133	17	204	128	19	109	21	118	24	117
TTTGGGATGCATCTTA	alt_5403_RC	250	46	293	290	51	246	51	242	71	226
CGCTGATTGGGATTTG	alt_5403_RC	410	44	474	379	69	409	64	372	71	344
TAGGCTTTGGCAGAAC	alt_5403_RC	518	94	739	564	115	543	91	543	102	505
TTACGGCAGATGTCGG	alt_5403_RC	906	142	1168	950	103	845	124	871	164	794
AAAAACATGTCGCGGG	alt_5403_RC	44	13	66	61	9	41	8	26	2	54
GTAATCGGGTTCTCGT	alt_5403_RC	40	3	66	43	3	37	7	58	6	34
ACTCTGGCACCGATGG	alt_5403_RC	976	129	1152	988	137	855	159	809	147	806
ACGACCCGCTCGCCTT	alt_5403_RC	189	31	210	195	29	141	28	177	27	152
CTGGATACTCATGTTA	alt_5403_RC	124	17	151	132	19	132	27	124	23	101
ATTCCAGGTAGTGCTA	alt_5403_RC	41	9	50	46	6	51	7	42	6	27
ACCCCCTTACATTGCA	alt_5403_RC	0	0	0	0	0	0	0	0	0	0
TACCACCGGAACCCAC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTAGATAAGTGAT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGTCTTCGGTCGT	alt_1261_reverse	5	8	14	8	14	8	13	2	7	5
TGACCTCCTGATCCCG	alt_1261_reverse	46	40	47	47	71	60	48	43	48	45
TTCGGATTGTTCGTAC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCATCCTTATTTTGAT	alt_1261_reverse	2	8	0	2	8	2	14	2	5	3
TAGTCGTCGGCGGGTG	alt_1261_reverse	26	28	13	26	22	25	20	28	29	20
CCTGATGGGGGGTTGT	alt_1261_reverse	94	90	135	121	75	98	91	82	102	89
CGCCCCGCTATTAGCT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGTAATATTGAAT	alt_1261_reverse	86	281	127	125	289	96	262	83	306	95
TATGGGAGTTTTCAAT	ref_1261_reverse	47	36	48	46	49	65	50	33	40	43
TTACCCTGTTCTTATT	alt_1261_reverse	19	11	23	16	13	13	27	19	15	13
AGGGAGAGGACTCTTG	alt_1261_reverse	139	123	152	117	137	125	140	117	157	108
ACAGCCATAGGACATG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GCGTAGCCAGGGTTCT	alt_1261_reverse	8	8	4	2	3	14	12	9	14	8
TGCTACCTCTACTGGG	alt_1261_reverse	11	9	14	16	15	8	17	14	20	18
TTATATTTTCTTGGTT	alt_1261_reverse	3	1	6	3	5	5	4	2	4	5
CCCTGCATTTGACTGA	alt_1261_reverse	129	99	129	109	124	118	131	107	128	100
CGTAGTATCTTTCGTT	ref_1261_reverse	219	233	259	202	237	215	240	228	265	193
GTTCCCCAACACGGCC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GATTGTAGCTGGTCAA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCGCGTTTGGGTG	alt_1261_reverse	51	113	69	45	112	38	150	56	131	63
GCAATAGCTCTACCTG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCTGCTGTCAACC	alt_1261_reverse	56	61	73	50	62	52	85	56	93	37
CTCCCAAGCTTATTGA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GATGAGATCCGAGGTT	alt_1261_reverse	19	16	24	16	16	15	15	8	13	12
AGCAGTCAGTTATAGA	alt_1261_reverse	0	4	3	1	5	1	10	1	7	0
TAACACTACATGCGGA	alt_1261_reverse	94	65	99	91	48	74	76	45	77	63
GCCAGTACATTCACCT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TATGACATAATTGTGA	alt_1261_reverse	49	45	84	39	41	53	48	32	51	32
CTGAGGTATTCAGTGT	alt_1261_reverse	70	95	82	75	89	59	83	75	97	51
CTCTCTCTCCATTACC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGTCATGCCCCCCTCT	alt_1261_reverse	5	4	2	2	13	7	0	3	3	2
ATTCTACCAGAGGGTA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGACATGATCGCTTCA	alt_1261_reverse	158	134	211	147	157	150	151	146	166	144
TCGGATTTCCTCCTGT	alt_1261_reverse	67	83	83	52	100	59	88	64	89	53
GCTCTATAGCGTCTTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCCGAAGGTGTCTATC	alt_1261_reverse	9	1	9	3	8	4	10	1	2	6
GCATATTCGGCCGCTG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CACAACTAACTCATAT	alt_1261_reverse	9	10	11	7	11	10	21	11	23	9
GTCTTGAAATGTTGTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGACCTATTCCTCGCG	alt_1261_reverse	61	47	84	63	76	68	56	53	98	58
GCTCGTTCTGTGCGCG	alt_1261_reverse	45	47	71	42	51	35	64	38	64	39
AGAGAAAGGGCTCCGC	alt_1261_reverse	8	5	10	8	19	13	18	12	13	12
GCTTATAGCTTGGCTA	alt_1261_reverse	134	167	157	109	165	137	163	129	138	112
GTGTTGTTCAGGCTGC	alt_1261_reverse	0	8	1	4	7	6	2	0	5	5
ACACAAGGCTAACAGT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTCTAATTTACGA	ref_1261_reverse	44	51	55	54	46	41	61	34	59	32
TCTAACAGGTTCTCGT	alt_1261_reverse	150	154	150	135	163	127	162	127	171	97
GATAGGGTGTTAAGCT	alt_1261_reverse	36	36	45	31	45	37	53	36	53	34
TTTCAGTGGTGGGAGG	alt_1261_reverse	94	100	117	99	90	109	87	97	110	78
GGTTCGATAAGAGTAT	alt_1261_reverse	37	44	41	37	39	22	49	31	50	26
GTGCATTGCCAAATAC	alt_1261_reverse	27	36	24	19	36	23	28	17	34	28
TATATAGTTTAGTCAA	alt_1261_reverse	16	24	15	17	16	20	18	11	18	13
TTTTTGGGCGACACCC	alt_1261_reverse	16	12	19	10	23	14	17	7	20	14
AGACACTGCGACTAAT	alt_1261_reverse	91	87	125	118	102	99	136	98	95	91
CGCATGTAACGTGGGT	alt_1261_reverse	54	54	39	44	58	44	42	38	43	47
GCTGGAACTGTGGAGG	alt_1261_reverse	104	83	114	73	91	74	74	77	105	62
ATGGTTTTTTTGGAGA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGACATATCTGATTAT	alt_1261_reverse	27	31	30	31	33	21	37	32	42	26
GATTAACCGCGATGTG	alt_1261_reverse	70	95	101	75	110	103	92	64	93	77
TTCCTGCCTAGCATTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGCGAGTTGTTCT	alt_1261_reverse	40	41	71	46	41	51	57	43	54	57
TTGGACTGATTTGTTG	alt_1261_reverse	12	19	14	13	19	9	14	10	22	16
ACCGATCATCCTCGCG	alt_1261_reverse	42	388	69	60	376	63	320	34	401	47
CAGAGCTTCTGTCTTG	alt_1261_reverse	135	129	163	137	157	94	146	101	166	94
AGTGGATATCAATCAG	alt_1261_reverse	107	136	129	101	142	101	138	92	135	90
TGTCCGTTTATCGCGG	alt_1261_reverse	36	19	40	25	17	20	19	28	25	21
TATGTACGTCTTGCAG	alt_1261_reverse	8	22	26	26	26	17	26	21	23	31
CAGTTTATAAAGCGAT	alt_1261_reverse	16	11	14	13	27	14	12	11	14	13
TCCAGTAATTTATCGT	alt_1261_reverse	55	52	54	48	40	39	50	49	41	55
CCGCCGGTTCACCATT	alt_1261_reverse	35	48	70	54	60	48	74	41	59	39
AGTGAGCGTACATATG	alt_1261_reverse	72	97	93	74	77	78	76	71	96	67
CGCCAGCATTTGGCTG	alt_1261_reverse	20	20	31	19	24	29	25	17	22	15
CGTAGTACAATCTGCA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GCAGACGTTCCATTTA	alt_1261_reverse	13	12	12	13	16	15	16	7	11	22
TGGCCTCCAATTCTAG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCGCAGTCTTCAC	alt_1261_reverse	168	187	180	150	177	166	187	156	189	136
TCACTAAAGCGCCTCG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGTTCCTTTTGGC	alt_1261_reverse	149	113	154	125	143	110	139	126	132	99
GTGCGTGTCTGCGGAA	alt_1261_reverse	28	31	27	28	24	23	38	22	26	19
CCTATGCGCAACTCTG	alt_1261_reverse	18	40	20	11	39	12	36	19	36	20
TTTGCCAAAAAATGTA	alt_1261_reverse	58	49	38	41	44	48	41	39	45	53
GACGTCGGTACGCATG	alt_1261_reverse	21	20	24	18	23	17	28	22	29	13
AACTGCTATCTTGCTT	alt_1261_reverse	16	16	17	12	17	11	16	12	16	11
TTGATGGTCACGCTGG	alt_1261_reverse	44	50	58	45	56	49	52	47	74	46
GTAACCTCTTTTGCTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GTGGAATTACCAGTCA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTACTGGGATTCT	alt_1261_reverse	80	70	100	72	70	64	81	71	66	78
TTTTAACGGAACTTCT	alt_1261_reverse	150	157	189	176	187	140	172	140	219	162
AGGTCGCCCCATCTGG	alt_1261_reverse	130	126	151	111	115	130	123	107	122	88
CTCACCTCATTCGGCT	alt_1261_reverse	109	152	108	106	145	93	144	67	164	70
TTCACTGCTATTTACG	alt_1261_reverse	22	25	28	36	31	31	32	23	32	15
TCTGCCCATGGGCATA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TATGGGCCATGGTTAG	alt_1261_reverse	163	170	180	164	153	162	154	137	155	128
AATGACGGTTCTTAGG	alt_1261_reverse	54	67	58	74	66	61	89	72	84	69
TGGGCAGCACAGGTTT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGAGCCTTCACTA	ref_1261_reverse	34	56	52	34	49	45	61	61	49	45
GCCGGCTCCATACGAG	alt_1261_reverse	175	183	240	216	188	164	230	151	211	197
TTCGCTCATTAGAGTG	alt_1261_reverse	6	11	11	6	6	5	6	11	9	6
TTAAGTTTGATGGGCA	alt_1261_reverse	58	57	80	48	73	66	94	60	87	65
TCACCCATATTATGTA	alt_1261_reverse	9	15	17	15	31	8	36	12	26	3
CTAGTGTAATAGATTA	alt_1261_reverse	82	112	112	90	103	81	100	87	116	99
TGACCGGCGAATCATT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTCGTGCTTCTAC	alt_1261_reverse	79	145	109	68	180	80	143	78	181	65
TGTCCTGATTTTTTTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TACATGCATCGGGGTC	alt_1261_reverse	71	70	89	66	93	74	69	81	92	71
AGAAGTTGGGCCTGCA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGAAATAGCTGGCATG	alt_1261_reverse	11	11	13	18	19	20	16	10	16	11
ACAGGTGTAAAGGATG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GCATATACTTTATTAG	alt_1261_reverse	41	41	51	33	44	30	34	35	44	30
ACATCTAGGAACAGTC	alt_1261_reverse	19	16	27	11	23	16	24	17	26	22
TAGAGTAAATGGGTTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCGCTCTGTAAT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTACTGCACACCT	alt_1261_reverse	2	2	2	1	7	3	6	6	14	4
GCCAATCTAGGAGTAG	alt_1261_reverse	9	6	9	11	6	4	7	7	17	4
TTTTTCTTGGGCAGGT	alt_1261_reverse	57	59	80	48	48	50	71	60	63	44
CGCGCACCGGTGAGAC	alt_1261_reverse	44	81	50	39	76	44	68	34	72	24
TAGTACTTTTGGAAAG	alt_1261_reverse	118	128	149	118	129	116	135	127	146	110
TTCGTTGATTACGTGC	alt_1261_reverse	10	12	10	13	7	10	15	10	15	11
CACACGCCTCCGTCGT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTCATTTCAATG	alt_1261_reverse	149	158	216	181	186	155	193	145	170	136
CGTTCCCTAAGGGGTA	alt_1261_reverse	47	73	70	66	61	48	80	59	60	56
TAGTTTGGTGTCGTTT	alt_1261_reverse	15	22	19	22	29	20	25	20	27	19
GTCGGACAACCACCTT	alt_1261_reverse	59	60	50	72	55	63	44	60	56	59
TCCCCTCACAGCGCTG	alt_1261_reverse	5	44	24	25	28	8	33	17	35	15
TTGCCTTTAGTAACTA	alt_1261_reverse	129	134	130	119	105	99	153	66	151	92
GCTTGCATTCTTATGT	alt_1261_reverse	41	30	78	60	28	35	41	42	33	32
TTATTTAGAATTTTAT	alt_1261_reverse	125	145	141	125	151	124	183	123	138	93
TCTATATTGGTGTTAT	alt_1261_reverse	27	48	46	38	42	30	41	27	64	31
CCTTGCTTATCTTTAA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATACGATTCATTAGCT	alt_1261_reverse	64	73	103	68	70	88	58	61	85	71
TATTGGGCTACTAATC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGTATAAGTGGAGCTA	alt_1261_reverse	31	38	41	41	46	24	30	28	38	24
AAAAGCGCCCCTTTGG	alt_1261_reverse	12	21	28	13	24	10	22	16	23	21
AGGTAGGGCTAATCGT	alt_1261_reverse	86	97	103	66	86	83	106	70	106	64
TAATCTTTATAATGCC	alt_1261_reverse	39	32	55	30	33	30	32	23	28	30
TATTTAGCGATCAGAT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGTGCTTCTGCGCTGA	alt_1261_reverse	52	55	47	46	54	49	52	44	57	47
GTTGATTCTACGTTAT	alt_1261_reverse	42	45	45	26	27	37	39	29	38	40
GGCAGGACATTTTTTC	alt_1261_reverse	122	140	163	141	133	138	145	107	149	122
GGCATCGTGTACTTTT	alt_1261_reverse	57	58	78	54	51	52	68	62	70	41
CGTCGCTTGGTCGATG	alt_1261_reverse	11	12	19	20	15	12	16	17	15	18
TGAGTTATTTGCTCCT	alt_1261_reverse	43	55	51	51	41	60	65	45	56	42
CTGTTATATCACTATT	alt_1261_reverse	6	20	18	13	12	8	15	6	16	14
CTACTGTGTCGGGATG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TCCACGTATAGATCGT	alt_1261_reverse	51	54	55	55	49	52	57	39	69	38
GTGGTCTATGGCAATG	alt_1261_reverse	14	21	15	13	25	17	21	9	19	19
GATACGTGATACGTGA	alt_1261_reverse	39	33	56	25	34	30	43	21	45	27
AACAACGCAACTCAGG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCAAAAAATTTAA	alt_1261_reverse	51	54	65	61	69	41	58	37	42	48
TGGGGATAACTTCTTT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGGTTTGGGGTCT	alt_1261_reverse	159	191	197	160	197	154	197	123	195	129
GCTACAAATACCTTAT	alt_1261_reverse	8	13	10	11	9	5	16	7	17	5
TGTCTCAAAATGGCGG	alt_1261_reverse	91	43	96	82	34	82	55	58	47	67
AGGGTTTCAGCTCTGT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGGCAGATAAGTTGAA	alt_1261_reverse	49	34	62	36	46	48	43	49	50	30
GCAGGGCCTCGTCGTG	alt_1261_reverse	122	139	125	111	106	92	155	88	137	111
TTGATCTTGGCCCGGC	alt_1261_reverse	47	40	56	45	30	48	51	47	43	33
AGACTATCATGAGACG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GTCTACGTTTACTACC	alt_1261_reverse	48	67	58	42	53	41	61	51	67	52
AAATTAGCATTTAGCA	alt_1261_reverse	79	92	91	69	73	77	65	67	63	57
CTGCGCTCGTCGTGCA	alt_1261_reverse	3	2	0	2	3	5	5	3	1	0
AGGTAATGTGGGGATC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TAAATTACCATATATT	alt_1261_reverse	33	48	38	24	33	38	36	25	36	29
TTACCTGGAAAGCGCA	alt_1261_reverse	80	106	106	89	95	84	110	84	114	53
TAGTTCGATCGGGCTT	ref_1261_reverse	5	8	10	14	3	11	9	4	11	9
TGTTGCTTGGTATAGG	alt_1261_reverse	36	29	34	20	29	27	28	23	42	24
GGATTACCGCGTATCT	alt_1261_reverse	25	21	34	26	22	25	16	25	23	26
CTCGGACTGCTGACTA	alt_1261_reverse	1	7	3	1	8	3	15	4	5	6
AACGCATGTCATTAAA	alt_1261_reverse	79	87	71	77	77	74	84	77	108	67
GGTAAAATTGCACAGG	alt_1261_reverse	61	56	76	54	41	58	65	40	80	61
TCTGACCAGACAGCCT	alt_1261_reverse	88	104	104	79	91	102	109	92	113	80
GTGCTCGCGAAATTAG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTCCCTTTGCTTT	alt_1261_reverse	66	51	103	69	70	83	82	81	74	71
CCCGGAGCTAGTGAGT	alt_1261_reverse	135	157	175	143	163	134	160	116	179	143
TGCCACCGATGCATGC	alt_1261_reverse	67	98	108	93	121	68	123	84	142	80
ATCCATCTATAAGGCG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATCGACGCAGCTTAGG	alt_1261_reverse	83	104	96	97	99	88	107	61	103	85
CCTGAGATGGGCATGG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTCGTTGTCCATT	ref_1261_reverse	54	78	62	59	85	59	61	44	88	56
CTGTTTGGGATTACGC	alt_1261_reverse	64	68	68	68	64	59	71	49	62	53
TGATATTGGAGAGGAA	alt_1261_reverse	257	248	321	273	239	249	268	259	283	202
TTCACGTTGGTAATTC	alt_1261_reverse	19	13	13	17	15	12	13	18	28	13
GAAGCCAAATCGCTAG	alt_1261_reverse	17	20	22	12	23	11	17	9	24	17
GCCCTCTGAACGCAAC	alt_1261_reverse	28	22	33	26	41	23	30	18	42	21
CTTCTGGGCTGACCGG	alt_1261_reverse	40	35	37	32	41	43	41	31	43	32
TTCTGTTATTATTTTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTGTCTGCTCTA	alt_1261_reverse	20	12	16	19	12	7	14	10	14	11
ATACGCAATAGCTATA	alt_1261_reverse	12	14	16	14	15	17	20	14	24	11
TAGTCATTGATGCTTC	alt_1261_reverse	14	6	9	5	4	8	8	9	8	6
TATCATTGTTGCTCGT	alt_1261_reverse	3	3	1	1	3	3	3	3	0	0
AATCGGTGAAGCGCTC	alt_1261_reverse	47	70	70	68	60	46	48	53	64	46
TTAGCGATATATTAAT	alt_1261_reverse	38	50	46	35	35	34	50	35	49	38
AGTAAGAGCGAAGGTA	alt_1261_reverse	102	80	86	72	95	81	97	68	79	62
TGCGTGTGTCTGGGCC	alt_1261_reverse	103	102	105	102	96	103	139	92	131	99
TATTTAGCGATCAGAG	alt_1261_reverse	0	2	1	0	3	1	4	0	3	1
CGCATTCAATTGTAAA	alt_1261_reverse	53	70	54	72	58	43	60	55	52	36
CTCATTTAAGTGGATC	alt_1261_reverse	21	12	21	14	15	16	10	15	23	15
TGAATTTTCGTGAACC	alt_1261_reverse	85	92	114	90	111	101	104	91	109	91
GCGGGTTATAGACAGG	alt_1261_reverse	6	18	24	21	17	19	13	17	13	14
GCGTTAGCGGCCGTGG	alt_1261_reverse	11	15	19	18	14	16	5	12	21	18
ATAGCGCTTAGAAGGT	alt_1261_reverse	21	24	27	33	33	27	22	15	38	27
GGCACTCGTTTGGCAG	alt_1261_reverse	14	21	24	10	12	15	14	9	20	15
CCGGCAGCACAATCCA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGTCCGCACTGGG	alt_1261_reverse	119	143	145	135	151	112	116	122	138	101
TTGGTACGCTTTGTTA	alt_1261_reverse	60	71	53	48	62	58	68	53	67	34
TCTGGTAATGCACACA	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTTAACCCACTTT	alt_1261_reverse	69	62	62	84	65	70	66	61	76	59
TCTTGTGGGAAGAGTT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TCCATACGAGGACTTT	alt_1261_reverse	6	14	6	11	9	12	14	12	10	8
GCCGTTACATCAGACG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTGCGGTGTTTC	alt_1261_reverse	37	60	74	57	50	51	53	49	63	38
CGCTGTCTTCGTAGCC	alt_1261_reverse	93	119	85	79	152	90	127	67	130	84
AAATTTTTGCGAGCAC	alt_1261_reverse	27	31	32	29	18	29	27	27	34	34
GTCTTATTAGCGTCAT	ref_1261_reverse	304	293	367	297	242	251	312	236	277	237
CTTTTACGGTTGTCAG	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TTCACAGTTGATTCGT	alt_1261_reverse	135	175	194	179	214	164	196	168	188	157
CCCCATTGATGAGGAA	alt_1261_reverse	23	19	42	33	31	24	30	22	26	21
GACATTATCTACGTGT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCTTGTTCTCTTA	alt_1261_reverse	39	37	43	51	36	40	41	39	54	35
ATGGTTTTCGATCCCT	alt_1261_reverse	18	12	19	21	15	16	14	20	21	11
CCCCTACGTGTCCAAT	alt_1261_reverse	0	2	3	0	6	1	3	0	2	0
CATTAGTCGTTTGCTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
AAGTGTCCAGCTCCTT	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATGATGTGACCGTTCC	alt_1261_reverse	15	61	43	27	50	41	66	52	50	36
TTTATAGTCGGGGGAA	alt_1261_reverse	105	86	121	75	88	94	108	80	111	71
TTTATCACATTCTTAT	alt_1261_reverse	156	123	206	150	112	157	104	144	117	152
CCAGGACGGCAAAGAC	alt_1261_reverse	5	6	3	10	7	14	3	7	4	2
TTCATTGTACTTACGA	alt_1261_reverse	44	44	56	38	57	46	39	53	60	35
AAACGTGCCTGTTTTG	alt_1261_reverse	13	17	27	21	26	12	31	17	23	14
GTACGCTGGACGCATG	alt_1261_reverse	107	95	83	96	75	81	91	77	81	78
CGGTCGTACACGGCTC	alt_1261_reverse	0	0	0	0	0	0	0	0	0	0
TTCACATGCGTGTATT	alt_1261_reverse	13	17	12	21	16	14	13	16	21	17
TGCATCCGCCGCATGC	alt_1261_reverse	6	12	11	8	9	5	8	10	8	7
GTCTACTCTGTAGTGA	alt_1261_reverse	27	27	28	22	21	21	28	26	16	23
GTGATTCATGCCGAAG	alt_1261_reverse	214	230	273	219	269	200	259	210	248	181
TCTAGTGACTGTTATC	alt_1261_reverse	15	34	14	16	24	14	26	11	33	12
CAATGGCTAGTAGTGG	alt_1261_reverse	101	90	114	90	94	78	104	79	118	69
ACGTACAATGACCATA	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TGTAACGCATGTCTGT	ref_16_fdr	76	82	86	88	76	75	81	59	108	64
CGAGTCCTTAAAGGGT	ref_16_fdr	48	68	47	52	74	56	75	45	58	43
CCCTCACTCGGGAACT	ref_16_fdr	27	21	26	25	44	16	37	23	35	21
TAACATGTGCTCGCAA	ref_16_fdr	34	34	43	31	44	36	41	34	40	35
TCCCCCGGGCCTCGTT	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TCATTACCGAAGTTCC	ref_16_fdr	73	94	69	62	98	69	92	58	82	69
GATCATTGGTAGGCCA	alt_16_fdr	269	177	270	199	167	189	168	165	209	194
CTGCACATATGTCAAC	ref_16_fdr	26	32	19	12	13	29	23	17	28	17
TCTACACTCTAATGTT	ref_16_fdr	5	12	13	6	10	6	8	9	14	10
TGGCATCGTCTCTCGC	ref_16_fdr	22	51	33	20	40	27	37	28	35	28
GCCCAACGCGGATACC	ref_16_fdr	31	53	45	39	42	26	56	23	53	23
TTACATGGGTTCCCTC	alt_16_fdr	138	83	125	115	83	136	119	102	98	99
CGATAGGGTGACCTAC	ref_16_fdr	10	12	8	10	7	16	7	8	13	5
CAGGCCGTGCAACTTT	ref_16_fdr	21	28	24	19	28	13	28	22	32	13
GCCCGCAGCTTCACTG	ref_16_fdr	15	11	15	14	13	18	14	13	17	10
TACACCGGGGTTAGTT	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TATTGATCGATTGTGG	ref_16_fdr	4	4	2	2	3	3	4	3	2	3
TGCCGTGAGCTCATCA	ref_16_fdr	35	34	31	37	39	22	33	21	53	32
CAGGTAAATCAGTCTA	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
GGTTGTGCACTCCCTT	ref_16_fdr	2	17	3	4	9	3	16	0	6	2
TGTATCAAATCTTTCT	ref_16_fdr	62	82	99	65	74	51	88	89	76	57
AATTTTAAGGCACTCG	ref_16_fdr	5	17	19	9	24	15	20	18	22	14
TTCGAGGCGATGACCA	ref_16_fdr	23	19	25	17	22	13	14	13	21	20
GTTTTGTCCTTTTATC	ref_16_fdr	41	37	46	55	55	57	47	48	59	47
TTCTCCATTCGGCTAG	ref_16_fdr	19	6	23	11	4	22	11	18	7	16
AACAGCGACCGCGCTT	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCTTGTGGGTACT	ref_16_fdr	10	23	20	19	18	18	16	12	17	11
AACCTATTTTCGTATC	ref_16_fdr	46	62	56	40	65	43	78	51	70	44
TAGCGGGTTCACGTAC	ref_16_fdr	45	77	77	49	79	53	56	49	52	50
TTGGGTTCTGAATTCC	ref_16_fdr	7	16	12	12	14	11	8	10	16	11
TTGGCCTCGGGGCGAT	ref_16_fdr	35	58	50	47	64	43	73	29	46	48
TTCGAGGCGATGGCCA	ref_16_fdr	26	25	29	23	28	22	34	23	30	28
TTTAGGAGAGTGGTCC	ref_16_fdr	4	7	4	3	2	1	4	1	8	2
CATTTCCGTTCGCGAG	ref_16_fdr	75	87	111	77	72	71	91	65	102	68
TTGCCAGTTAACGCGA	ref_16_fdr	110	124	117	69	94	96	118	77	126	82
GGGGCTATCTGTGTTT	ref_16_fdr	2	3	4	2	10	10	5	3	15	3
CGTCTACGATTTTGTA	ref_16_fdr	17	30	18	14	22	21	35	20	22	16
AAACTCGTCATTTGCC	ref_16_fdr	51	41	53	45	63	59	66	54	64	48
TTTTGTTTCCGAGGTA	ref_16_fdr	4	9	3	7	4	4	9	3	7	4
CTAACTCTGTCACGTG	ref_16_fdr	15	14	6	20	13	10	10	6	12	14
TTGCGTATCCTCGAAC	ref_16_fdr	20	22	30	17	33	28	43	26	28	24
TCTCAGGCGCTTACAT	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTGCTTTGCAGTT	ref_16_fdr	57	82	86	56	99	74	86	50	103	49
CACCGTTCTACGGGCG	ref_16_fdr	6	9	6	5	14	4	14	7	16	4
GTCCGGGCAGATAATG	ref_16_fdr	5	9	11	3	8	4	9	4	4	3
TATACCGGTTTTATAT	ref_16_fdr	60	68	55	39	78	45	102	61	65	49
ATTGCGATACGGGTAT	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGTGTTGCTCAGC	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TGGATCTTGCTCAGGC	ref_16_fdr	11	19	18	13	16	15	29	12	30	20
GGAGCGAGCACTTATC	ref_16_fdr	24	37	27	18	28	22	28	32	35	23
CCTCCATCTGCCAGCC	ref_16_fdr	28	50	47	33	49	48	40	33	56	37
GGACGCTCAAGAGTTG	ref_16_fdr	18	23	30	13	27	19	35	21	33	14
CTTATTAAATAATAGC	ref_16_fdr	42	72	49	34	71	33	74	31	65	39
TTTAACATGCGGACTG	ref_16_fdr	7	15	11	5	22	12	28	7	35	9
AAGCCCCCCCGATAGG	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TCGAGGACTCTCGCGC	ref_16_fdr	31	42	33	34	30	19	59	19	51	25
CGAATGTTCTTTATTG	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTTCTTGGGCATA	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
AAATTTCTGGCTGGTA	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGGCTCCGCGTAT	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGTCATTATAAG	ref_16_fdr	44	51	36	34	35	38	50	26	44	32
AACTCATCCGACCTGG	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCTGGCATTGGCT	ref_16_fdr	55	47	43	50	55	54	76	44	77	51
ATAAGGAGTATACCGG	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTAATTTCAACGC	ref_16_fdr	10	5	8	8	5	4	8	3	5	10
TATATCTGATTCTACG	ref_16_fdr	16	36	27	25	21	22	29	21	31	29
TCACTCTAGTTCTGCC	ref_16_fdr	6	13	12	5	6	13	6	13	9	9
ATTCAGTATTCTATGT	ref_16_fdr	48	39	53	33	53	33	64	36	42	33
TACAGTTTATGCTAAT	ref_16_fdr	0	0	0	0	0	0	0	0	0	0
CGGAGTTGACCTCGTG	ref_16_fdr	15	21	24	24	35	25	26	21	21	26
TCCCTTGGCCATTGTA	ref_16_fdr	40	67	58	40	79	50	75	41	87	57
AGGTCTCGCTGGACAT	alt_5854_new	9	7	5	5	10	11	12	3	10	7
GATTATGCTAATATCT	alt_5854_new	19	14	19	17	19	11	23	12	23	6
GGGGTCCGGTAGTCTA	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CCGTCGTAGGATATAG	alt_5854_new	29	57	26	21	68	31	52	30	64	31
TCCGATCTTTTTTAGT	alt_5854_new	16	23	13	16	21	20	22	7	18	15
GAGTGCGATGTTTTCT	alt_5854_new	23	28	18	22	19	19	24	25	28	16
CCGCTGCACGCACTAA	alt_5854_new	161	209	156	140	191	142	196	131	238	102
TCGCATGCATTTGGGC	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CGTTACGTCAGTTTCA	alt_5854_new	48	57	63	43	80	53	61	67	72	50
CCAGCACCCCTGGGGG	alt_5854_new	15	31	27	20	45	20	48	16	49	14
CGCTGCAAGATTTCGT	alt_5854_new	0	0	0	0	0	0	0	0	0	0
GCTGCTAGGTGATGAT	alt_5854_new	4	4	2	0	4	1	0	1	2	0
CTGTTTTTCAGGCCAC	alt_5854_new	3	1	1	1	3	1	1	1	2	4
CACTATGGTATCTTTC	alt_5854_new	11	17	14	7	12	12	16	9	12	3
ATAATTGTTCAAGACA	alt_5854_new	0	0	0	0	0	0	0	0	0	0
TGTTCCGGCCTGCTCT	alt_5854_new	28	37	25	18	26	18	47	18	24	12
AATGTCTATCGTTATC	alt_5854_new	0	0	0	0	0	0	0	0	0	0
TACCAGGCTTTGGGCT	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CAGCCTGTCTCGTGTG	alt_5854_new	20	76	21	24	70	24	53	18	69	17
TGCGTATTCGTAATCT	alt_5854_new	4	6	7	6	10	2	3	4	9	3
ATTTGACCAGTTGTGC	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CTCAAGGCAATATCTG	alt_5854_new	14	28	23	17	17	8	11	6	26	19
CTGATCGCCCAATGCA	alt_5854_new	29	46	31	26	44	24	47	23	42	25
TGACTACCATCTTGCT	alt_5854_new	21	20	17	8	21	16	24	19	21	10
GATGTTAAAGGGTTTG	alt_5854_new	13	27	22	12	28	10	27	11	17	14
TGCTCACTGTGCAGCA	alt_5854_new	6	7	9	5	10	7	10	6	12	3
TCAAGATAGCCCACTG	alt_5854_new	43	122	74	66	116	55	102	45	104	55
CGCCAAGCTTTACACA	alt_5854_new	44	83	49	62	61	47	106	53	83	49
TAGTTTTGGGCATTTT	alt_5854_new	0	0	0	0	0	0	0	0	0	0
AATCCGCACAGGCCCA	alt_5854_new	6	5	6	6	8	5	5	4	10	6
TTGTTAACGGCTCGGC	alt_5854_new	15	28	22	13	39	13	29	19	27	22
GGCCAATAGCTAACTC	alt_5854_new	12	25	8	12	20	14	20	9	24	12
GTAAGAGCTTGTGTTC	alt_5854_new	32	62	40	36	55	37	52	20	39	27
TTGGTGTTCCACGTTC	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CGCGAGTCGTACCGAG	alt_5854_new	0	0	0	0	0	0	0	0	0	0
ATGTTTTGTCCAGACT	alt_5854_new	46	69	48	26	57	37	67	32	58	51
CTTGGTACCGGTCACC	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CGACTATTAGGATTTT	alt_5854_new	50	120	72	51	136	59	143	67	154	51
AGATTGTTCAGGTCCA	alt_5854_new	3	13	2	3	8	5	15	4	7	3
CAATATATGCTCCTCT	alt_5854_new	39	85	62	58	89	50	96	47	115	48
ACTCTTGTACTAACTC	alt_5854_new	23	35	37	12	38	26	47	21	54	21
TTGCCCCCTATAGCGG	alt_5854_new	42	65	61	45	63	24	64	38	63	37
ACTTGTGGGTCCACCA	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CAGTAAGTATGCCTCT	alt_5854_new	67	87	64	63	82	72	69	70	88	48
ATCTTGTTTTAGTGGT	alt_5854_new	5	8	3	4	4	1	5	2	4	3
AAATTATCTGCTACGT	alt_5854_new	35	28	36	23	48	26	48	15	50	15
TTACTTACATCCCCAG	alt_5854_new	1	11	6	3	4	7	7	3	12	3
AAGTTTTAGGTTGGGA	alt_5854_new	74	88	86	67	102	51	94	79	84	80
CCGTCCTGGTTGACGT	alt_5854_new	1	2	1	3	2	1	1	3	0	0
GAAGGCTCTTTTCAAG	alt_5854_new	0	0	0	0	0	0	0	0	0	0
TTATCAAGTCTTTATG	alt_5854_new	65	81	66	78	106	56	122	59	117	59
TCGTGAACGGAGCCCC	alt_5854_new	0	0	0	0	0	0	0	0	0	0
TTTGAAGGATCTGCGA	alt_5854_new	28	54	34	38	56	32	45	39	49	33
CTCGTTGGCAAAATTA	alt_5854_new	3	4	6	6	3	2	7	0	6	0
ACACTTTGCATAGCCT	alt_5854_new	216	373	233	211	391	232	403	174	386	194
TGCGGTAGGAAGTTAT	alt_5854_new	0	0	0	0	0	0	0	0	0	0
GCATACCCTTGCTGCG	alt_5854_new	0	0	0	0	0	0	0	0	0	0
GTTGTGAGACGGCCCT	alt_5854_new	0	0	0	0	0	0	0	0	0	0
ATTTACATTGTTTGTG	alt_5854_new	5	3	4	0	4	0	3	2	3	2
ATTGTAGAATCTCGTT	alt_5854_new	0	0	0	0	0	0	0	0	0	0
TAGTATATACTCCTAC	alt_5854_new	69	79	76	57	111	57	108	52	121	69
ATTCTGATTCAGATCT	alt_5854_new	25	24	24	16	26	24	27	23	21	22
TGTCTTCAATGCCACG	alt_5854_new	7	14	6	10	19	7	10	4	12	9
ACACATACCAATGGTA	alt_5854_new	34	47	36	22	49	20	44	42	51	22
TCACGATGAAGGACGA	alt_5854_new	260	249	268	267	269	243	267	248	245	217
CCACGCACCAAACAAA	alt_5854_new	0	0	0	0	0	0	0	0	0	0
GGTCGTCATACTGAGC	alt_5854_new	25	50	17	20	53	31	41	17	62	11
GTCTATTTTATTGCTT	alt_5854_new	26	22	26	17	36	11	23	18	26	14
CCATACATAAAAAGAC	alt_5854_new	47	52	50	38	81	45	70	39	117	43
TTCGGCATCATGTAAA	alt_5854_new	0	1	1	0	1	1	0	0	0	0
CGGGGTAGCGTGCTGT	alt_5854_new	4	14	5	7	9	2	12	7	16	6
AGTGCTTATGGACTAG	alt_5854_new	3	4	1	6	9	6	8	2	9	4
GTATCGATGTTGTTTG	alt_5854_new	10	26	25	19	28	17	29	18	31	15
GCAAGTTTTATTCTCG	alt_5854_new	37	71	44	33	64	34	73	32	62	36
GATGCAAGCACGTGGT	alt_5854_new	52	69	58	61	59	38	69	25	61	24
ACGTTCTGCCCAGCGC	alt_5854_new	44	45	32	23	42	21	36	16	35	22
TTCTACAACGGGCACA	alt_5854_new	0	0	0	0	0	0	0	0	0	0
ATACTTACATCCCCAG	alt_5854_new	0	0	0	0	0	0	0	0	0	0
TCTTCCATGACCAGGC	alt_5854_new	0	0	0	0	0	0	0	0	0	0
CTGGGGTCCTTTTAGC	alt_5854_new	21	37	29	21	39	20	50	16	49	20
TACCATGTGACTTATG	alt_5854_new	24	22	10	21	38	12	30	14	39	12
GTCACCCACTTGATAC	ref_5492_fdr	5	16	9	5	21	9	18	6	21	1
TTATGCCGCCCTATTT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTGTACTGAAACC	ref_5492_fdr	26	47	32	14	30	14	35	22	22	13
TACGAGGTTCATATCT	ref_5492_fdr	35	35	41	32	50	29	44	31	29	23
CTTTTCTAAGTAAACT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGTCGCAACAGCT	ref_5492_fdr	37	41	59	58	65	39	61	54	79	38
GTTACTTCCATCTCTT	ref_5492_fdr	6	9	7	4	10	8	14	13	5	4
CACTACGTAACAGGTA	ref_5492_fdr	8	12	11	13	11	6	10	9	9	8
GCCACTCGTGCGACTT	ref_5492_fdr	10	1	3	6	3	4	5	6	8	2
CAGTTGGCTCGCCTCC	ref_5492_fdr	38	57	57	46	51	25	58	33	51	41
ATTCATATCTCTTCGG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ATTGACTGGTCAGTTA	ref_5492_fdr	15	24	19	20	20	16	21	13	25	14
CCTTTGACGTTTTATA	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTCATCGGTCCTG	ref_5492_fdr	122	158	142	127	142	115	171	134	203	126
GATCCATCGTGGCCTA	ref_5492_fdr	23	26	28	13	26	19	20	25	26	20
GGAGATTATGTGTGGG	ref_5492_fdr	59	70	99	70	93	75	93	86	91	49
GCTGCTTGGTGGGTTT	ref_5492_fdr	124	162	133	125	150	125	161	106	181	108
TATCTTTGTGTTGCGT	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TATCAACTTTCGCCCT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TGAAACTAATTTGGAC	ref_5492_fdr	33	54	50	39	50	45	60	53	66	40
ACGTTCTGCTATATAC	ref_5492_fdr	16	23	22	18	40	12	30	11	25	14
TGTACCACCAGGAGCA	ref_5492_fdr	255	308	287	246	290	274	346	230	364	244
ACTTGCCGTAGCTATG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
CTACGTGGCGAACGAT	ref_5492_fdr	1	2	3	1	5	1	0	2	2	1
TTATCTTTGTTGATGG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
AGAATTATCTTCCCCA	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTGTCTTCCGTCG	ref_5492_fdr	4	7	21	6	9	10	3	4	6	7
GACGACCGGTTTTGTA	ref_5492_fdr	54	59	58	59	83	66	58	46	57	50
AAAGACTTTACCTGGT	ref_5492_fdr	21	32	26	20	49	10	52	15	52	17
GCTTGATCCGCCGATG	ref_5492_fdr	12	17	20	19	31	28	18	14	22	24
CTATTCATCCAGGATT	ref_5492_fdr	58	61	70	48	80	66	81	51	64	45
GCATGCGTGGCACCGG	ref_5492_fdr	17	47	42	40	42	41	29	23	49	31
TAACCTATGAATATGA	alt_5492_fdr	61	82	74	79	79	77	65	66	74	66
CCCCATCCCTGCCCGA	ref_5492_fdr	24	42	32	26	36	32	41	34	46	26
GGATATGAGCCTGGCG	ref_5492_fdr	38	40	53	24	41	50	40	39	35	33
GCTATGTCTTATCTTC	ref_5492_fdr	18	18	24	15	12	24	28	18	18	18
GTTGGCGTTATATATA	ref_5492_fdr	15	18	16	10	18	14	25	16	31	15
GGTCCAGGACTAAAAT	ref_5492_fdr	118	78	137	97	116	97	123	105	112	101
TTGTAGTAGGGTGGCC	ref_5492_fdr	41	34	46	42	40	39	50	19	47	21
TAGCGTAACGTAGTCG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
AGGAGGGATGGAAACC	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TATCTATTCAAAGAGT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTGTACGGTTTCC	ref_5492_fdr	11	20	23	10	8	12	13	8	15	10
GAGATTGAATTAGCGC	ref_5492_fdr	40	68	40	34	68	44	55	28	72	33
ACTTTCTGAGACCCTA	ref_5492_fdr	26	44	20	25	34	25	34	30	31	29
GCATGGTCCAAAGCCC	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCTTGTACACTGC	ref_5492_fdr	12	28	9	11	27	13	33	10	21	8
AGTGCTTGAATCAATG	ref_5492_fdr	11	23	13	12	23	9	12	17	18	13
TTCAGAAATCCTGTGT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ACTACCCTGCTCCACG	alt_5492_fdr	7	1	2	6	13	4	11	5	7	5
CGGGTTGGCCAGCCAC	ref_5492_fdr	6	8	16	11	12	11	12	9	17	5
CGAATTCTACCTAAGT	ref_5492_fdr	29	37	25	30	45	25	30	19	27	28
CACCTGCTCCTTCTCC	ref_5492_fdr	33	45	55	37	45	38	50	40	37	27
TCGGCTCATAATAGGT	ref_5492_fdr	35	33	46	29	45	31	43	40	44	34
GCCGTCGCCGTAGCGT	ref_5492_fdr	80	118	137	113	107	76	101	101	121	76
ATGACTTATAACCGGT	ref_5492_fdr	2	3	2	2	7	3	2	0	2	3
TTATCGCCTACAACCT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTTATGTATTTT	ref_5492_fdr	3	6	4	5	4	5	4	6	8	8
GCATGGTCCAAAAGCC	alt_5492_fdr	154	206	172	186	220	150	223	160	187	158
ATCTCTAGTGGTCTAA	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTCTCACTATTTG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TCGAACGTGGGTTGTA	ref_5492_fdr	46	44	47	40	43	33	54	29	58	33
CGTTAGTTTGCGACTA	ref_5492_fdr	20	30	20	26	29	16	43	25	26	16
TAGCCGGCATTCCAGA	ref_5492_fdr	109	119	137	101	107	111	140	116	132	88
CTGCAGAGATGTTTAT	ref_5492_fdr	19	35	21	33	21	22	26	32	33	16
GTTGGTTTCTTGACAG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
GAAGCCCCTTCCCGTG	ref_5492_fdr	13	12	14	17	19	21	15	12	17	5
GTTAATTACTCGATCG	ref_5492_fdr	18	22	22	15	11	23	13	15	23	19
ACCGTTCTCCGACGGG	ref_5492_fdr	38	51	50	57	71	44	65	41	55	41
TCCGGGCCTCCAAAAG	ref_5492_fdr	8	15	11	13	19	10	17	20	19	17
CTCCCTGTTAGTACCC	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TATCCACCGTGGTCGC	ref_5492_fdr	2	1	4	2	2	1	1	0	1	1
CCAAAATGGTGGCGTA	ref_5492_fdr	68	77	109	74	66	70	72	72	61	64
TTTTCATCAATTGTTT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ACATTCATCTCACGGG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTATTTGTCTTCT	ref_5492_fdr	139	146	158	130	148	122	144	126	123	87
TTCAGGCCTGCCGGTT	ref_5492_fdr	21	42	26	31	27	31	28	29	33	25
CGAGCCCGGCGTTTCC	alt_5492_fdr	12	7	7	9	6	3	4	6	3	4
AGCCTCTGGCCAGGCG	ref_5492_fdr	7	6	4	9	11	8	6	5	17	6
CTTTTGGCCACCTGAT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTGCCAAAAGCCT	ref_5492_fdr	9	7	11	6	14	5	8	5	7	5
TTCATTTTCCTTGAAA	alt_5492_fdr	0	3	1	2	0	1	5	3	2	1
TTGTGACCCCGTATTA	ref_5492_fdr	4	3	12	7	12	7	9	2	4	13
TCTTTTATCTGGTGGA	ref_5492_fdr	20	49	27	33	42	22	56	18	59	23
CAGCTATACGCACGCC	ref_5492_fdr	83	136	96	85	127	96	144	80	150	70
GGATGCGGTTCATTAG	ref_5492_fdr	39	55	43	31	59	36	51	27	52	31
CGTATATTTATAGAGC	ref_5492_fdr	31	45	42	38	38	27	33	40	41	26
TGGGAGCAGTTATGTC	ref_5492_fdr	7	10	14	11	10	17	11	9	14	10
CGGTACCAGAGTTGGC	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCAGGACTTGCA	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTGCGGGATCGAT	ref_5492_fdr	5	6	7	8	4	10	1	6	8	7
TCCACCCGGGTAACAT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ATAATCTCCTCGCACT	ref_5492_fdr	21	18	20	18	16	10	20	14	21	11
ACGCATGAACCTATTC	ref_5492_fdr	3	3	0	3	2	0	1	4	3	1
AGCTCTCCTCTGCACC	ref_5492_fdr	15	14	12	8	11	10	20	10	12	6
TTACTCTTGCTTCGCA	ref_5492_fdr	20	20	28	20	35	12	26	29	31	23
CCCCAACTGTAGCCAT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
GCCCAATAGTTGCATG	ref_5492_fdr	3	5	6	4	4	2	7	1	3	2
ATTACGTAGTAGCAAG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTTACGACATCGC	ref_5492_fdr	11	15	15	10	8	12	16	10	21	10
GTCTCGCCGAACAACT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
AACCGTATTAAGGAGC	ref_5492_fdr	7	15	11	11	21	11	22	11	26	14
TTCTCGACTGGTGCCT	ref_5492_fdr	89	116	134	99	135	119	102	93	146	84
GCCACTGATGATCATT	ref_5492_fdr	3	3	3	7	2	5	5	7	5	4
CTTTAGCATCTCGAAG	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
AAGAATACGCTCGCCT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
AGGGAAAGTTACGCAA	ref_5492_fdr	4	17	10	13	10	11	18	15	17	14
TGGGCTCTCCTGCCAG	ref_5492_fdr	21	21	28	24	22	31	29	21	35	23
CAGTATGTTCTCTGGG	alt_5492_fdr	50	53	57	59	73	44	76	37	63	51
TGGCTAATGGTTGACG	ref_5492_fdr	51	65	74	72	62	67	73	48	74	68
TCCGGTAGAATTCATT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCCCAGTTTTTGG	ref_5492_fdr	45	52	55	37	52	38	53	29	37	32
ACTATATTACGCGCAC	ref_5492_fdr	33	51	55	52	69	54	61	28	63	30
TAACGCCATTTACTTT	ref_5492_fdr	2	0	4	4	2	1	4	3	4	1
TTCATTCCCCGAATGG	ref_5492_fdr	2	3	4	4	5	5	2	3	5	4
GTGGCATGTCCGTGGA	ref_5492_fdr	9	20	26	20	27	20	25	8	18	12
GGCGGCGTGGGCTCTC	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCACATCAGTGCG	ref_5492_fdr	10	16	25	17	15	9	17	18	28	13
CACCCTCTCTGCAGTT	ref_5492_fdr	30	46	42	30	37	25	63	25	56	21
ACAGTATGAGATCATT	ref_5492_fdr	0	0	0	0	0	0	0	0	0	0
CTGCATCCGTTTATGG	alt_5492_fdr	37	26	56	43	35	38	40	34	44	36
CGGATTTACTATCTAG	ref_5492_fdr	2	1	2	1	8	2	2	4	3	1
GTACTCCTAATAGGGC	ref_5492_fdr	1	2	4	3	2	3	1	5	1	0
TCTCAGATTTAGTTAG	ref_5492_fdr	12	16	18	20	12	7	15	8	19	13
TGATTTTCAGTAATAC	ref_3387_missing	2	11	10	2	12	2	5	4	9	7
TATTCTGCCATGTGGG	ref_3387_missing	13	16	12	8	6	7	14	4	14	9
CCCAAGCCCCTTAGGA	ref_3387_missing	16	21	12	12	32	11	30	16	32	15
CGCTATGTGGATTCAA	ref_3387_missing	2	9	5	4	11	1	5	2	10	4
TCGCCCGTATTTTGCG	ref_3387_missing	2	2	3	6	5	4	3	2	6	2
GTCGCCCGGTACGTTC	ref_3387_missing	11	16	19	8	23	10	16	7	25	7
CCCTACTTTGGGTGAT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
GACGGCGTGTCAAATC	ref_3387_missing	12	11	12	12	25	11	23	11	20	15
TCTTCGCAACTCTCAC	ref_3387_missing	7	15	10	11	11	13	19	9	22	10
CTCTATTCTAATGGGC	ref_3387_missing	4	1	1	1	5	0	2	0	1	5
AGTCTGGCATCGCTGT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
GGCAGGATTACTCTCG	ref_3387_missing	13	33	23	16	28	24	31	8	27	5
TTTGTGTCCGTTTTAT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
GGCCTATTCTCGGATA	ref_3387_missing	34	78	50	24	77	30	74	39	69	34
AGTGGCGAGCGGCACC	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TAGGTTTTCTCCATCC	alt_3387_missing	63	118	91	71	121	64	138	84	151	72
CCTGCAACATTTCAGG	ref_3387_missing	29	19	21	13	20	18	24	16	35	21
CGTCTTTAGGCCTATT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TTACATAGCCCGCGGC	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TTAGTCCCGCGTTTTA	ref_3387_missing	14	22	13	23	36	20	34	16	32	15
CTCTTCACTGAGTTTG	ref_3387_missing	22	35	28	17	49	24	46	32	46	27
CTAAACAGTAGCTGTT	ref_3387_missing	5	6	9	6	12	8	13	7	14	7
AATGCGTGGTTTCCTT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TCTCTGTATTACTGTC	ref_3387_missing	3	7	4	4	4	1	9	0	3	0
AAATTCAAAATAACGC	ref_3387_missing	27	44	34	29	34	20	39	23	42	23
TGAACATGTGGCGTCA	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
CTCAATTTATCGCCCG	ref_3387_missing	7	5	6	7	8	4	7	2	16	2
TCACCAGTTCGACCGT	ref_3387_missing	2	11	6	4	13	3	11	3	14	1
AGCCCAACGGGCGAGT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
AAAAGCGTGCGGACAC	ref_3387_missing	7	19	12	9	20	2	17	13	14	5
GGTCATTCTGGGAATC	ref_3387_missing	6	11	7	10	10	8	8	5	12	8
CATATAACTAGCTCGG	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
CTTAGTCACTATTTAT	ref_3387_missing	13	23	23	17	49	14	31	15	28	23
TAGTCCTTCGTGTGGG	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
GCTATAGCACGGTTCA	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
GCTTATGGTCACTCGC	ref_3387_missing	9	6	1	5	8	10	14	6	3	3
GTCTTCCGGTTTTCTG	ref_3387_missing	1	10	5	0	4	5	7	3	7	0
TGTCGTCGCTTGTGGG	ref_3387_missing	7	8	9	2	10	10	17	8	17	8
GATTTACGGTAGTCTC	ref_3387_missing	3	7	4	2	11	4	6	2	9	1
CAGCTAAGATACCTTG	ref_3387_missing	10	16	8	6	23	5	20	8	19	4
AGGGTCTGTCTCGGGG	ref_3387_missing	16	27	20	35	38	23	28	15	39	10
TACAGTTGATGCCATG	ref_3387_missing	7	20	13	13	24	13	21	11	16	8
GGTACTATAGTTTCCC	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
AGTACCTGGGATCGTC	ref_3387_missing	26	36	35	12	38	21	37	16	26	11
TCTTAAGAAGATGAGT	ref_3387_missing	4	20	12	10	18	10	12	9	13	5
TTGTAGTGCTTAGGAA	ref_3387_missing	15	44	22	16	41	16	52	16	30	14
CTATGCCCAAGGTTTA	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TTACTAATGACAAAAT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTGAACGCGATA	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TGCTATTCCCCCATCC	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
AACGGCTTCAGATCGT	ref_3387_missing	15	22	15	20	23	13	31	10	31	10
TTTCGAAACAGCCTAT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
ATCGCTTGTAACGATG	ref_3387_missing	16	33	12	14	34	18	23	21	34	13
CGTTCGCCATATATGG	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TGCGAGCCCTTGATTG	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
ACATCAGAGGTTTGAT	ref_3387_missing	6	9	8	5	17	7	12	7	13	3
AAAGTTTATCTCCCGC	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
CGTATTAAGGAAACAT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
CAAGTGACTGATGGCT	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
AAAACCTGTCAGCTTT	ref_3387_missing	12	33	35	19	32	16	30	14	36	20
TGTACCTTTAGTCTCG	ref_3387_missing	7	15	11	5	10	10	12	6	13	1
AGATGTTCTGGTGGGG	ref_3387_missing	4	13	9	10	11	5	18	1	13	2
GTATTTCGTCAAAAGA	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
GATGTGTCTACACTGG	ref_3387_missing	23	45	18	18	28	22	48	18	37	18
AGCTCATAATATTACA	ref_3387_missing	7	7	2	5	7	6	7	7	10	6
TTCGCCTGCGATCCTC	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TCCCACGACTTTATAA	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TTTATGGGATTTACCA	ref_3387_missing	23	30	31	14	33	26	52	18	31	21
GTTGTACTTCGTGCGA	ref_3387_missing	0	0	0	0	0	0	0	0	0	0
TTCACCCCTAATGCGA	ref_3387_missing	7	14	9	4	18	9	23	6	17	5
AACCGCAATCAACGGC	ref_3387_missing	5	6	4	9	5	6	8	2	6	3
GTCCTTTCCGACCTCC	ref_3387_missing	29	42	18	20	36	18	26	23	21	14
GTCCTTACTGGTAGAA	ref_3387_missing	19	26	16	19	29	10	29	21	23	19
GCCTTCAACCAGTTGG	ref_3387_missing	13	6	6	8	10	3	15	6	12	3
AGGACCGCATCCAACT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CCACGGGTAATCGTGT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CCACTTGTACAACCTC	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
TGACAATGTGGATCAA	ref_1592_missing	6	10	3	7	6	6	9	10	7	9
AGCATGGGCAGCATGG	ref_1592_missing	1	0	2	6	3	2	5	2	1	0
GGGATATGCGTTACTG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
TGAATGCGGTGCGCGG	ref_1592_missing	11	18	14	12	16	7	20	9	17	6
TCACCAGATCGATATG	ref_1592_missing	4	14	11	16	23	9	15	10	20	3
GTTGGGCTTTGGTTGT	ref_1592_missing	3	3	3	0	2	2	3	3	4	0
GCTTTTTCCCTGTCCA	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
TATCTGTCAGTAGTAG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CTACCCCATTTATCAC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
GACGGTTCCTTCGGGT	ref_1592_missing	5	5	12	11	15	18	11	8	16	5
TTATCCATTTCTGAGA	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CTTGGCTGTTTCATTG	ref_1592_missing	82	154	109	78	154	85	167	93	171	79
GCCTCAGCCTTCCTTT	ref_1592_missing	7	9	11	9	16	5	13	6	8	11
TTGTTATCATGTTTCT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CTGTAGCGAAATGTCT	ref_1592_missing	11	24	13	11	20	19	25	10	26	14
GTAATATTGCATTGTT	ref_1592_missing	1	16	6	11	19	8	16	12	16	9
TCTTCTCACATTAATG	ref_1592_missing	4	7	9	7	15	10	7	6	7	4
GTGACGAAAGATATAG	ref_1592_missing	14	22	18	13	28	11	27	10	25	14
CTGACGCAGGGTCTAA	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
TTCCGAATCCTTAGTC	ref_1592_missing	22	21	21	18	32	14	33	18	30	17
GTATTTGGTCGGACAA	ref_1592_missing	14	23	20	18	23	8	34	19	23	10
GGATAGCCTTGCGTGT	ref_1592_missing	63	95	79	63	92	54	110	54	99	63
CGGCATCTTTCTGAAT	ref_1592_missing	2	0	2	1	1	2	4	0	0	0
TTGGATATTGTATTTC	ref_1592_missing	10	23	14	14	12	7	28	5	28	10
CACTTCGGATCATGAG	ref_1592_missing	1	1	1	1	0	2	5	0	0	0
AATGTTTCCCGGACTG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CCAAGAACGACCTGTG	ref_1592_missing	9	21	17	16	25	6	27	16	27	12
GGGATTTTACAACTGT	ref_1592_missing	3	10	4	2	4	4	13	5	14	4
GGTCCGTTAACCCGAC	ref_1592_missing	4	5	5	6	9	3	6	2	16	0
TTGGCCTTGTAGCGTG	ref_1592_missing	28	42	33	30	35	18	33	25	45	30
TTCGCATCATTGGGCT	ref_1592_missing	71	127	117	96	119	65	128	78	134	76
TTTGCTAAATCCTGTT	ref_1592_missing	6	8	6	6	1	6	5	3	9	5
TCAACTGGACCCTTTT	alt_1592_missing	48	71	58	42	71	45	74	52	64	35
GGTCGGCCTCAGAACA	ref_1592_missing	137	216	170	133	191	138	214	128	211	115
TTTCCTCCAAGGCGTC	ref_1592_missing	37	68	52	39	64	23	74	41	59	32
TTATCCTGAACAAGTT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
AAGGAAGAGGTGGAGT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
AGGAGCCATCATGCGA	ref_1592_missing	20	25	36	24	34	28	39	27	37	17
AACGCATTTGTTTTCA	ref_1592_missing	12	23	11	12	23	12	23	14	12	6
GTATCACGCGCACTTG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
GCTCCCGCCATTTCGT	ref_1592_missing	27	35	45	27	38	26	38	32	56	21
GTCTGCCACGAGGTGG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
TTGCTCGGCGTACTCA	ref_1592_missing	16	25	15	23	22	11	23	13	22	13
CCTACCGTCTTGGTGC	ref_1592_missing	6	27	10	6	43	7	34	8	39	8
TACTGATTCGTTCGTC	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
GTACCTCCTCTTTTTG	ref_1592_missing	1	13	7	8	25	7	22	4	35	8
TCCTGGAGGGTATTGA	ref_1592_missing	52	59	40	56	72	49	66	41	68	46
GAAATGGGTGCTCTCT	ref_1592_missing	55	49	52	57	57	42	60	36	64	42
GGTTTTAGTTGTGGGA	ref_1592_missing	29	40	23	17	26	16	35	28	47	16
CCTCCCACAGCGTTTT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CCCTTCTCGCGGTAAT	ref_1592_missing	19	14	15	12	28	4	25	9	22	17
GCCTGTCGCAACCCTA	ref_1592_missing	7	9	5	6	8	2	3	7	9	3
CATTATTCTTAGACCA	ref_1592_missing	29	47	32	42	49	40	58	23	53	53
GTGAAGGCTTTGGTTT	ref_1592_missing	8	3	5	4	8	4	3	0	5	0
TCGCTAGAAGATAAGG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
AGCAATTCCTCTGAAC	alt_1592_missing	52	93	86	74	114	90	127	69	121	74
GTAATCAGTGTAGTTT	ref_1592_missing	3	3	7	6	5	7	6	2	7	1
ATCCCTGGTGAGTCCA	ref_1592_missing	11	15	13	19	20	12	16	7	24	12
ACTGGGATTGCACTTG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
TAGGTGGTGGGTCAGA	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
ACCCAACCAACTTTTT	ref_1592_missing	12	8	8	7	3	9	8	5	7	7
CACCAGCACAATGATG	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
AGATACGCTGTGCAGT	ref_1592_missing	19	15	10	7	22	5	10	8	9	10
TTCGGTACCGATTCGA	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
ATATAAGGTTTGAGTT	ref_1592_missing	43	80	42	30	84	48	49	30	73	37
CCTTTCCCTGCGGAGT	ref_1592_missing	27	49	34	36	46	19	58	21	57	23
CCATTTCTTGTCAGCG	ref_1592_missing	63	84	83	60	112	60	91	71	114	72
CGCTTTTTATTGCTCC	ref_1592_missing	16	27	8	11	18	18	19	13	24	12
CGGTTTCACCGGTAAG	ref_1592_missing	10	19	12	14	21	15	14	8	10	8
CGGCCGGCGTATACGG	ref_1592_missing	14	23	19	15	27	14	25	16	24	8
TTCTCTTACGTGACTG	ref_1592_missing	33	45	31	26	31	29	55	26	51	30
CTGCGACACTGTCCGT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
CGCGTAACCCGATCTG	ref_1592_missing	6	12	16	9	13	6	23	8	12	6
TTGTGATCCTGTCGGT	ref_1592_missing	16	22	9	8	8	20	20	14	11	13
TGGTTACCTCTACTGT	ref_1592_missing	33	36	29	28	37	24	36	27	46	23
TCCTAACCGTCATGAG	ref_1592_missing	72	112	73	72	124	59	98	60	89	48
TAGTTTCATGGGTATC	ref_1592_missing	2	1	4	1	1	1	1	1	1	0
TATCGTTTGCCTTTAC	ref_1592_missing	3	8	7	5	13	7	6	6	4	4
GACACTGGAGCGACCC	ref_1592_missing	0	3	1	2	1	1	2	0	1	3
TTTACTGGTTCTGTCT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
TGCCATTGTGTTTGGT	ref_1592_missing	0	0	0	0	0	0	0	0	0	0
AATCGTTTTCTTAGTT	ref_1592_missing	18	29	22	20	45	18	38	22	42	24
TGTTGGGGGGGTCTAG	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GTCAGACCTTGCCGTG	alt_5163_RC	8	12	14	7	24	5	11	14	10	8
GACACCCGCACTTCGC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TGATGATGTTTGATGG	alt_5163_RC	98	105	98	83	111	82	88	61	91	77
TGTTCGTATTTGGTTG	alt_5163_RC	217	293	267	240	312	187	334	217	299	202
GATGTCTAGAACGGCA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GTTGAACATCAAGCGC	alt_5163_RC	82	103	101	69	134	83	126	84	108	61
GCCTGGCGATTGCTCT	alt_5163_RC	27	46	31	30	60	31	54	29	50	20
ATCCGTAACGTACGGA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CCGGTCAGATCGTCTG	alt_5163_RC	4	27	6	8	30	4	20	2	36	3
ACAGGATATTTTGCGC	alt_5163_RC	13	11	11	14	7	5	7	9	7	8
TGGTTTCTCCAGGAGA	alt_5163_RC	9	7	11	8	11	6	12	11	11	10
TCCAGATGCATTAATG	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GCTGTGGTGTAGTGTT	alt_5163_RC	10	29	16	17	28	21	24	19	20	12
AGATTGGGCGTCAAAT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TGCGACCTAGAACAGT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TGCTCAGATCTGGGAC	alt_5163_RC	46	61	34	35	59	33	53	26	53	25
AAGGAAGCACCCGAGT	alt_5163_RC	14	20	26	23	21	14	20	20	20	22
GGGAATTTATTAGGTT	alt_5163_RC	50	69	53	42	84	49	76	54	59	52
ATCACATGGCTTATGT	alt_5163_RC	12	13	8	4	15	10	21	9	24	10
GCTCATCACCAATATC	alt_5163_RC	11	13	13	16	13	10	18	10	18	12
CACCTGTATAGTAAGG	alt_5163_RC	36	97	39	30	64	28	45	25	68	31
TTGGACTTTGTCCGGG	alt_5163_RC	5	17	11	7	15	11	9	4	5	7
GTCGTGCAATAGAACT	alt_5163_RC	8	28	17	16	20	12	20	9	26	10
CCTTAAGCCATCGTCG	alt_5163_RC	0	5	0	0	6	1	9	0	6	0
CAGAATGTGCGACCTG	alt_5163_RC	52	49	56	40	68	28	83	35	74	43
TGGGTATTGTAATCCA	alt_5163_RC	9	5	6	4	2	7	15	10	7	6
TTCCCCCTTGCGACTC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CCCACGGCCAGCCACT	ref_5163_RC	6	10	6	6	12	6	17	2	14	6
GACGAAGGGCTCTCAA	alt_5163_RC	50	55	70	43	46	42	69	35	73	43
TTGAAAACAGGTTTTT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GATTCGTCTAGCATAC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CCCCTCTGAGTGCTGC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
AGGTGAGATAGTACTC	alt_5163_RC	22	38	24	19	30	23	23	23	35	16
TTGATGGCTCGAGTTG	alt_5163_RC	21	29	32	31	33	25	34	17	43	14
TACCGCAGCTTAATAT	alt_5163_RC	21	23	23	17	29	19	21	16	24	13
GAGAACGTGAACTAAT	alt_5163_RC	56	65	48	43	58	43	50	36	58	33
CAATGATTGCTTCGTT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GGTAAGGGGTTTCTAG	alt_5163_RC	13	17	13	18	20	7	17	9	19	11
TTCTATCTGTTGGCTT	alt_5163_RC	94	151	102	87	151	71	179	85	147	75
AACAGGGGACGTAACT	alt_5163_RC	32	45	49	44	50	35	33	33	61	39
TCACTTGCATAAATAG	alt_5163_RC	79	127	110	92	110	57	122	73	155	69
TGTAACGATCACGCTC	alt_5163_RC	12	7	9	5	9	3	20	13	13	4
TATGTCAATGTTGGGC	alt_5163_RC	2	1	5	2	3	2	0	6	4	5
GCGGCGTCGAAGGTCC	alt_5163_RC	35	50	35	36	62	35	48	40	46	26
TGGAAGCAGCAATTTC	alt_5163_RC	9	10	17	21	27	17	15	19	10	10
GAGTGGGATCATCTCC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TCTATCTACTTAATTT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CCTAGAGGCATGTTAC	alt_5163_RC	28	69	48	48	46	30	83	34	68	30
CATGTGTCTAACATCT	alt_5163_RC	39	46	31	37	81	40	51	35	66	24
TCAATATCCTGCAGGA	alt_5163_RC	14	20	22	17	12	20	17	19	7	9
GTCTGCGTGCGTATGC	alt_5163_RC	38	59	55	39	53	26	54	45	73	30
AAAACCGAAAAAGATT	alt_5163_RC	7	15	13	8	14	6	10	8	9	7
GAGTGGCCCAATCATT	alt_5163_RC	36	75	71	65	83	57	85	56	101	56
AATGTCACTATAGAGT	alt_5163_RC	30	54	56	32	73	40	84	39	68	25
AGCTATTGGCTTTTAC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GTCCATTTGTTCGCGC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GTACATACCTCCATTA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TTACCCGAAATTTCTA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CGTCCCCCCGATGTAA	alt_5163_RC	6	32	14	14	21	9	22	10	30	17
CAGTTCTAAAATTCGT	ref_5163_RC	42	80	42	40	65	53	82	34	65	32
TGTATCACGACCGGTG	alt_5163_RC	0	1	1	1	4	2	6	0	2	0
ATGCCATAATCTTCAG	alt_5163_RC	22	28	22	29	41	12	41	25	35	21
CTATCACTTTTATAAT	alt_5163_RC	32	42	25	18	40	28	44	26	37	17
GTACACTGCGAGGACG	alt_5163_RC	3	12	7	10	10	6	10	5	7	5
TAATTTTTCAGTCCAG	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CCGGGACGAGATGTGC	alt_5163_RC	28	39	15	23	28	16	38	27	43	19
TGGCGGTACAGACGTG	alt_5163_RC	37	33	25	24	24	23	40	30	43	19
GCCAATTAAAATCCAT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TATTGTATTCCTGGGT	alt_5163_RC	4	18	12	8	12	11	15	11	18	12
GAACAGCAGGAGTGTA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CTTTATAGGCGCCCAT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GAATCGAATCGTAAAC	alt_5163_RC	39	57	56	32	55	33	64	27	63	25
AGGCTGGGCCGCTCTT	ref_5163_RC	254	349	358	276	400	260	399	237	455	218
GCTTGCCTTACCAAGG	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CTTTATTTCCACGTAC	alt_5163_RC	0	0	0	0	0	1	1	0	0	1
CAGCCCTTTTTCTTCT	alt_5163_RC	16	20	16	17	18	22	26	13	23	8
CCCTTCGTCCTGATCG	alt_5163_RC	14	20	19	17	19	24	16	12	22	11
TCTCGGCAATTTTGAA	alt_5163_RC	37	41	40	37	51	36	58	44	60	38
GGATTTAAGTATTGTC	alt_5163_RC	19	47	28	22	36	20	32	14	34	14
AGACGAGGGCTACTAT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
AGCGTCGGATTCTTGA	alt_5163_RC	56	71	67	58	94	61	99	47	77	49
GTGTACTGACCCCCTG	alt_5163_RC	2	2	1	3	2	0	1	0	4	1
TGCGAGCATGTTGTTT	alt_5163_RC	14	23	10	19	27	14	23	15	16	13
ATAGCCGCCTCTAATT	alt_5163_RC	27	38	32	27	35	26	44	39	45	30
CGCGCGTCAATCATTG	alt_5163_RC	22	32	26	23	30	21	32	18	34	21
TTCGGACTATTTTATA	alt_5163_RC	104	118	89	110	150	88	142	86	137	82
CCCATGTTCGTTCTTC	alt_5163_RC	13	19	18	4	25	12	15	16	19	8
GCTTATGTGTAAAATC	alt_5163_RC	5	12	2	2	3	2	5	1	8	2
CTAGCTTATTTCAATC	alt_5163_RC	1	3	1	2	3	7	3	1	2	0
CACTTTATCTGTAGTT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CTTTGGATCGACATTG	alt_5163_RC	3	10	7	7	9	16	13	4	13	7
CCAGAAATTCGTTGTT	alt_5163_RC	45	44	53	33	59	32	57	41	59	39
GCTTGTATTCATAGCC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TACATGAGGCAGCTCG	alt_5163_RC	122	174	138	138	171	121	177	127	191	113
GCAACGTATCGCTTTT	alt_5163_RC	26	54	44	31	57	22	78	39	75	28
TCCAACCCCTCGCACA	alt_5163_RC	11	12	7	8	12	9	17	10	23	5
TACATATGGTCTACAT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGGATTACACTC	alt_5163_RC	45	50	36	17	51	22	39	29	47	34
ATGTTATTTTACAGTA	alt_5163_RC	32	35	58	33	32	30	51	37	52	18
ATTTTTTCTTCGTAAA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
ACCATTAAGTGGATAC	alt_5163_RC	55	60	54	55	75	48	97	48	68	36
AAATTTCAGTAGTCTG	alt_5163_RC	1	1	0	0	2	1	0	0	1	0
TTTGTAGTCCTCTGAG	alt_5163_RC	9	10	6	8	14	10	23	14	13	3
GTCTGTTGTGCTAACA	alt_5163_RC	173	298	215	182	263	175	301	145	344	154
AATGTTCTGACACCTA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TTTATGTATCAGGTTT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CATTTGGGGGCGTAAG	alt_5163_RC	9	4	4	5	2	4	4	14	11	7
GTCAGCCCCCTAGGCA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GCCCGCGTGTGACTTG	alt_5163_RC	35	48	41	28	52	44	57	36	51	26
TTCTTTGAACCAGGTC	alt_5163_RC	17	34	26	18	34	19	33	27	41	19
GCTGGTAAACTCCAAC	alt_5163_RC	18	44	37	39	58	27	43	30	44	22
TGAGCGTTGGACTGAT	alt_5163_RC	8	10	3	4	9	7	15	5	4	3
TTCAAACTGCTATGGG	alt_5163_RC	15	23	23	19	30	17	26	11	26	17
ATCTCGACTTCAATGA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GGGATGTATCTGTAAA	alt_5163_RC	66	54	61	53	65	41	60	48	65	46
TTGACAATCGGCGTCG	ref_5163_RC	125	169	137	111	196	130	206	110	187	93
CAGATTATTTTCCGGC	ref_5163_RC	58	69	71	59	81	58	81	49	90	54
TATCCTTTAGATGGAC	alt_5163_RC	48	50	44	34	73	36	70	39	80	41
TCACGTGTAGACTATA	alt_5163_RC	15	21	15	14	12	10	21	8	21	11
CAGGACCTTGCTTTGA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
ATATTAGAAAAGAATT	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
ATAACTGATAAATGTG	alt_5163_RC	6	5	0	6	9	3	8	1	4	8
TAACTTGGCCGATCTG	alt_5163_RC	71	84	79	68	124	69	109	79	97	75
AGCCTTGAGTGTTATC	alt_5163_RC	11	10	6	4	5	11	7	9	13	7
GACACTGATCGAAGGA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CAATCCCTCCTTGCTC	ref_5163_RC	2	12	8	8	16	4	12	10	19	11
TTGCACTGTTATTCTT	alt_5163_RC	23	22	33	19	35	24	32	18	28	21
TGATTGGGCGTCAAAT	alt_5163_RC	228	307	241	217	280	216	371	149	323	208
GCATTTTTGCTAGTTC	alt_5163_RC	12	23	14	14	24	17	24	21	22	10
TTTGGTTAACGGCTAC	alt_5163_RC	33	64	45	31	49	29	60	31	63	28
ACAATTGATACAGACC	ref_5163_RC	41	65	47	41	56	33	57	34	65	51
TGAGCGAGACTGGCAT	alt_5163_RC	7	17	9	6	14	9	18	12	14	13
TTTGGTTACGTTGACC	alt_5163_RC	112	112	141	107	143	111	135	117	153	100
TCGAAAACCTATTGTT	alt_5163_RC	31	47	39	30	45	35	51	30	43	23
TGATAATTTGAATCCT	alt_5163_RC	0	3	2	3	7	2	5	2	4	0
CATCGCTCTGTTGAAA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TGGGTTCCATCTCCGG	ref_5163_RC	52	65	40	36	59	30	50	38	63	31
CCATTACTCTCTTGTG	alt_5163_RC	50	75	49	47	75	44	86	43	51	50
CTATATTGTGGCTGCC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
ACAAAGTTTTTGGCAG	alt_5163_RC	0	1	0	2	0	1	0	0	1	0
TTGCGCATGATCCAGT	alt_5163_RC	19	17	20	16	20	13	20	16	29	15
TACCCCGCCGCATGTC	alt_5163_RC	3	34	5	2	31	2	29	3	34	6
TATGCATGCGTTTACC	alt_5163_RC	12	20	13	11	25	13	27	11	32	8
TGTTTGGGCATACTCA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
AAAAGGTGTAGAATCC	alt_5163_RC	32	59	47	35	61	36	43	37	45	39
TCCATCAACTTTATAT	alt_5163_RC	2	2	1	0	3	0	0	0	2	1
GGGCCTTGGACACTGA	alt_5163_RC	37	53	41	46	47	46	55	33	67	43
ACTTAGGCATATTCTG	alt_5163_RC	29	29	29	33	48	31	41	29	46	26
TATAAGAGACATCCAC	alt_5163_RC	34	60	39	48	55	54	56	29	65	31
GGATGTCTTTATACGT	alt_5163_RC	2	8	10	7	4	7	11	4	4	6
ACGCCATGTCACTTCG	alt_5163_RC	15	13	15	10	6	4	10	7	19	4
GACGCGCCCCCGTTAC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CATGTAGCTTGGTCAT	alt_5163_RC	2	11	10	12	8	11	16	3	11	5
TCGCCGAGAGCCCGGA	alt_5163_RC	31	34	41	35	42	26	47	29	42	25
AGGGCGGAGTTATCAG	alt_5163_RC	103	145	143	98	168	100	159	84	124	81
ATGTTTTAATCTAGAA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
AGGGCTCCTTAACCTT	alt_5163_RC	16	21	13	11	10	17	21	15	13	16
ATGTACAATGTCTGGT	alt_5163_RC	74	85	82	62	84	56	100	62	99	60
AACGACGCTCAAGTTT	alt_5163_RC	0	0	2	1	0	2	2	0	1	1
TTGATGCGCGATAGAT	alt_5163_RC	58	69	80	51	100	48	102	42	86	49
GGTCTGCATATTTCCA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
AGTGGTCCCCGCTTTA	alt_5163_RC	60	114	47	52	78	49	88	45	99	50
TGTATATTTAAAGTCT	alt_5163_RC	86	114	97	78	125	80	132	88	149	73
AGCCCCATTGCAGCTA	alt_5163_RC	49	54	53	50	68	45	59	41	66	33
GGTGATACTGCATCTC	alt_5163_RC	27	40	46	37	43	41	44	32	39	27
TCCAGAATCCTGAGCA	alt_5163_RC	17	10	6	11	21	19	18	5	13	6
TTTATTGCCTGAGCAC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TTAATGTTACCGATAG	alt_5163_RC	69	105	97	65	87	77	90	63	102	49
TTACAACTAGACTCTC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CGGCTCGAGTCTCTTA	alt_5163_RC	122	204	132	137	226	115	250	98	243	114
GGTCTCTTATCTATGC	alt_5163_RC	4	0	3	3	8	2	3	6	4	1
ATTGAGCCGACGCTTG	alt_5163_RC	8	12	13	10	11	4	11	5	15	12
CTCGTTTATTATAAAC	alt_5163_RC	11	17	15	13	14	18	8	5	12	8
CCTCTTAGTAAACTGC	alt_5163_RC	47	75	40	41	52	64	65	51	74	27
TATGGCCGGCTATGTT	alt_5163_RC	41	54	42	42	50	44	45	30	47	45
ACCCGCCCTTCAATGG	alt_5163_RC	30	47	29	36	38	29	46	35	47	32
AGCGGCTACCTAAGGC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
TTACCAGGGCGACTAA	alt_5163_RC	188	237	199	142	236	178	239	181	248	156
GGTTTGAAAGCAGTTG	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GCAGCTCATTTTGAGC	alt_5163_RC	9	19	9	0	14	5	12	8	13	3
GAAATCTGGGGGTATA	alt_5163_RC	30	31	21	13	28	22	30	16	20	18
TTATCACTTGCCTGCC	alt_5163_RC	14	19	11	16	14	16	19	12	17	9
GCGCACTAGAACTATG	alt_5163_RC	3	4	1	2	4	4	4	1	1	2
TCTTTCCGGGCCCTGC	alt_5163_RC	68	85	101	80	87	66	85	76	124	83
GATCCGGCAATTTGCT	alt_5163_RC	20	23	27	20	22	24	33	18	33	14
CGCAGGCCTTGAATAT	alt_5163_RC	6	14	13	4	17	3	8	3	17	8
ATATCTATGTCGCCCT	alt_5163_RC	8	8	7	9	6	6	9	10	13	5
TCAACGGCACTGTCGA	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
GACCAGGCGATTCTTT	alt_5163_RC	29	27	20	34	31	33	30	23	34	20
TTGGTTAACCAGCTAC	alt_5163_RC	0	0	0	0	0	0	0	0	0	0
CCGAGCGTCCCAAGTG	alt_5163_RC	84	122	112	94	107	76	115	90	110	73
CACAATTATTCCGTTG	alt_5163_RC	13	16	21	12	15	14	34	20	29	15
TTTTGCTATCGTGTAC	alt_5163_RC	11	9	6	10	11	3	11	7	12	6
CCCGGGTGTTGAATCT	alt_5163_RC	11	19	12	12	28	22	30	20	19	11
TATCAAGCAGTATTCG	alt_5163_RC	29	44	18	22	52	36	43	22	59	24
AATTGATTGATCAGTG	alt_5163_RC	45	64	50	46	72	52	79	46	82	45
TGTCTCTCCTTTTGCC	ref_5885_new	0	0	0	0	0	0	0	0	0	0
GACAACTGGATTCTGT	ref_5885_new	775	92	924	855	77	792	82	788	93	732
GCTTAGACAGTAGAAC	ref_5885_new	489	55	545	451	66	430	56	451	71	413
ATCGATATATTTTGCA	ref_5885_new	576	46	643	586	45	555	48	538	68	511
TGTACGTGGTCCCTCC	ref_5885_new	1673	163	1918	1736	167	1592	167	1432	195	1406
CAAATGCTTCGCTTGG	ref_5885_new	799	92	911	800	52	762	93	738	81	679
CTAGTTGCGCTGCGCG	ref_5885_new	334	56	392	352	53	313	58	304	46	263
GTTTTCCCCCATTTAC	ref_5885_new	4240	467	4961	4335	482	3930	489	4089	517	3784
AAAGTAATAAATGTAA	ref_5885_new	304	29	367	329	26	259	20	287	25	259
GCATGTTCTCCACTCT	ref_5885_new	2660	246	3133	2771	297	2403	279	2642	273	2205
TGGCAGTGTACTTGTT	ref_5885_new	596	68	695	614	55	553	69	575	68	489
CGCCCAAGCTCCGAAA	ref_5885_new	609	64	636	579	78	515	84	516	71	542
GCCTTCCCAGCTTGCA	ref_5885_new	539	52	695	612	51	564	49	602	68	485
ACTTTGTTCGGGTGTA	ref_5885_new	858	100	1032	942	106	842	111	848	107	824
GGACCGTAGGCGCCGC	ref_5885_new	0	0	0	0	0	0	0	0	0	0
CAATCTATTGGGCCCA	ref_5885_new	844	86	1085	939	67	765	92	823	82	749
ACGGACCAATACTGTG	ref_5885_new	28	10	26	31	9	23	5	17	11	19
CCTCCGGTAGTCGCGC	ref_5885_new	266	29	311	285	28	273	42	262	25	222
GCACGTAGTCAGAGGG	ref_5885_new	0	0	0	0	0	0	0	0	0	0
CCAAATATACTCCGTC	ref_5885_new	0	0	0	0	0	0	0	0	0	0
TTCTGTTGATGCTAGT	ref_5885_new	321	37	433	387	40	311	46	340	46	308
CAAGTCATCCCATGTT	ref_5885_new	83	17	96	92	14	74	8	78	21	55
ACGTGTCAGGAGCCTG	ref_5885_new	171	11	221	187	18	192	15	178	16	147
GAAAACACGTTAAGGG	ref_5885_new	486	42	592	535	42	461	54	521	42	476
CGGTACCTATATATCA	ref_5885_new	0	0	0	0	0	0	0	0	0	0
TCCTGCTTTAAGATTT	ref_5885_new	506	48	632	621	48	485	55	503	56	464
GCAACCCAATCCAGTT	ref_5885_new	0	0	0	0	0	0	0	0	0	0
GTATTGGTCATGCCCC	ref_5885_new	214	21	277	224	17	207	19	163	17	147
CAGAGTGTGCCGCGAC	ref_5885_new	731	94	910	881	73	747	85	723	76	704
TACTAAGGATGCTGAA	ref_5885_new	381	51	504	402	33	360	45	379	33	348
AACGCCCCGAGGGGAT	ref_5885_new	502	55	632	574	63	456	51	560	64	444
CCATCGTGATAATATT	ref_5885_new	236	26	260	247	24	198	30	212	28	201
GCTGCCGGAGGCCATG	ref_5885_new	1448	141	1742	1586	132	1328	151	1383	134	1288
TGCGGTCAGTTATTCG	ref_5885_new	355	39	441	418	45	403	43	417	37	327
GTGGCTGCAGTTCATG	ref_5885_new	1276	132	1583	1335	139	1282	150	1238	151	1084
CGGTCACTTATTAGTG	ref_5885_new	396	47	388	343	43	311	46	316	34	308
TATTAGCCCGCGCCTT	ref_5885_new	997	81	1196	1115	112	1002	110	1051	120	893
ATAGAATAAAGCCGGT	ref_5885_new	90	14	146	143	6	118	12	99	10	97
TGTTGCTTTTTACGGT	ref_5885_new	915	88	1089	897	77	801	84	891	93	729
CCACTTGGCCTGCCCA	ref_5885_new	10	6	14	11	6	6	4	14	5	6
ACACGTCGCTTTTTCA	ref_5885_new	248	19	239	254	24	243	26	211	18	205
TTAAGCAAGTTGTGTG	ref_5885_new	463	45	609	549	59	444	51	446	45	432
TAAGAAAGCGGTCCTC	ref_5885_new	1696	154	2155	1700	168	1708	184	1591	165	1546
TTCAATAAGTGTTGTC	ref_5885_new	0	0	0	0	0	0	0	0	0	0
GTATCTTAAACCGGCC	ref_5885_new	1699	177	1921	1751	180	1490	183	1492	215	1501
TCTGCATGAAACACCT	ref_5885_new	0	0	0	0	0	0	0	0	0	0
TTTTTTGCCCCCAGTT	ref_5885_new	0	0	0	0	0	0	0	0	0	0
GACTGGTCTTTACTAT	ref_5885_new	420	49	513	440	37	413	53	373	47	444
AAAGGCTTCTCTTCAA	ref_5885_new	0	0	0	0	0	0	0	0	0	0
ACTAGCCCGACCAATT	ref_5885_new	0	0	0	0	0	0	0	0	0	0
CGGTCCATTCAGATCT	alt_5612_new	8	14	6	4	11	5	10	5	7	5
GGCCAAGTACGGTACG	alt_5612_new	124	163	132	103	189	106	164	84	179	73
CGGGTACATCGAATTC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GGTACGCAAAAAATGC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GATGATCTCACTATCT	alt_5612_new	14	24	12	24	19	20	24	17	20	20
GAACTTAACTACCTAG	alt_5612_new	5	7	2	4	12	9	7	1	8	6
CCAATCTGTTCCCCTT	alt_5612_new	3	19	4	3	13	4	14	5	31	4
TCCTTTATACTCTCTA	alt_5612_new	0	2	1	2	2	2	0	2	4	1
AAGGCAACGGGTGGCT	alt_5612_new	189	219	214	189	255	171	276	183	241	173
ACCTTCCACAGTCATT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GTATTTCCAGCAATGC	alt_5612_new	6	6	20	8	29	17	9	7	7	5
ACACCATATGCTTAAG	alt_5612_new	31	43	31	27	51	40	41	33	57	31
AGTTTCCGCGGCTCGG	alt_5612_new	43	39	49	35	45	24	62	34	50	36
CTCCGAACTTGAGTCA	alt_5612_new	79	225	134	91	218	94	203	91	218	59
ACCTGTGATTCTTTAG	alt_5612_new	16	40	37	31	45	21	56	22	62	27
CCTGTTCTCGTGCGAG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TATGCTTGAATATCCA	alt_5612_new	6	4	12	5	4	4	0	3	6	3
AGGTTATGTCGTAGGT	alt_5612_new	22	21	16	13	14	11	20	10	15	10
TATGGTTTATTTCGCA	alt_5612_new	33	39	55	40	44	32	70	52	41	33
CCCCACCCAAAGAGCT	ref_5612_new	11	26	35	22	33	17	25	27	19	18
TTTGTCCCTACCTGCG	alt_5612_new	55	91	79	64	106	59	125	49	143	62
AAAGTCCATATTAGTC	alt_5612_new	6	12	19	22	18	14	10	22	10	10
CTCGTTGTGGTTTGAT	alt_5612_new	8	16	12	12	11	4	15	8	5	11
TAATCTCGTCAGGTCT	alt_5612_new	34	38	46	32	32	20	37	32	53	31
ACTCGCGTACTCGGCG	alt_5612_new	16	13	10	3	12	10	14	6	11	11
TATCCGTAGTCATTAG	alt_5612_new	1	2	2	3	2	6	5	2	1	1
CCGAAGTCGACCCAGT	alt_5612_new	6	29	6	7	31	13	26	7	38	12
GGCCAATGGAGGCGTT	alt_5612_new	1	2	1	1	0	1	1	0	2	1
AAGGCGACGGGTGGCT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
ATACGAGTTCAAGTGT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TAAGTGTCCTGGGCAC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TTACATGGCATGGACC	alt_5612_new	24	16	16	17	25	11	17	13	24	13
TGACCACGATTGGTAC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TTATGGATGCCTGTCG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
ATTATTGAGGGATGTT	alt_5612_new	23	31	18	16	25	20	28	10	32	16
TACTGCTTGGACGGAT	alt_5612_new	12	29	12	14	23	22	23	14	33	19
GATCCACAAATAACGG	ref_5612_new	30	41	44	30	42	27	41	32	44	21
TGACCTATTCATTGTA	alt_5612_new	19	13	10	12	21	17	19	14	20	8
CCTCGACGAGTGCACC	alt_5612_new	16	15	18	19	18	10	19	13	24	5
TCTTTTTTCGATTTTT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
CTAACCTTTGTCTAGG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TCGCCTCGCATGGCCA	alt_5612_new	32	39	37	28	39	23	39	23	33	30
TGCGAAAGTCTTCGTG	alt_5612_new	26	43	27	34	62	33	41	39	45	28
CACTGTGATGAGAGCC	alt_5612_new	71	78	71	59	105	60	86	63	82	48
TGCGGCAGAAATTTAT	alt_5612_new	4	7	5	10	9	6	1	7	7	3
TTTAGGAAGTCACGGT	alt_5612_new	117	187	176	137	184	152	188	147	209	105
CGCTCCCAGATAAAGC	alt_5612_new	46	112	72	76	113	56	102	54	102	60
AGTTAGTGTATTTCTT	alt_5612_new	60	91	83	70	79	60	90	48	85	47
TTAGGAGTTGTAGTAT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TACCACGGTTTCTGTT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
CCCCTGTCTTTAATTG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GATCCCTCCAAGGGCT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
CGCAAGCGTCCTCTTT	alt_5612_new	10	3	14	9	14	4	8	10	11	14
GTTACATAGTAATCCC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
AATTCTCAAGGGGGGT	alt_5612_new	27	34	34	42	38	36	26	36	45	24
TTCGTTCAAGTGCGAC	alt_5612_new	26	44	36	30	43	23	40	42	42	25
CAACCTATTTTCTCAC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TTGCGGGCGTGGGAAC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
ACGTTAACCTCGCGAT	alt_5612_new	6	8	10	5	13	6	8	3	11	7
ACCGAGTTTTGAAAGA	alt_5612_new	81	110	99	101	127	85	101	86	142	58
CTTGCTTTGACGACTG	alt_5612_new	50	56	63	36	54	41	67	46	84	37
TACTTCACTCTTCCGT	alt_5612_new	23	25	23	23	10	15	29	24	14	10
TAAATAGTGCGTCAAT	alt_5612_new	3	12	8	8	5	9	2	10	7	6
TTCAAGCGCGCCAAAA	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GTAACTTTGTTAGCCT	alt_5612_new	21	39	34	26	30	20	26	21	18	22
CGAGGGTTGCCTCTTG	alt_5612_new	101	127	150	85	158	88	132	90	106	89
ACCCAACTCTGTAAGG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TCGTGTTTTGGTCACC	alt_5612_new	57	66	56	57	77	47	53	49	81	55
TGCCCGACTTGATCTG	alt_5612_new	3	2	2	3	1	2	1	0	4	2
TATACGGCAAAGGTTC	alt_5612_new	44	60	54	39	50	41	61	43	83	34
ACTCTCCCATAACAAA	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GAGTCTCTGACGGTGG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GGGCTGCTCTAGCTCG	alt_5612_new	24	34	23	31	34	24	27	22	27	27
GTCAATTTTTCAACTT	alt_5612_new	2	6	2	5	3	4	7	1	4	2
TCCGAGTTTCGCTGTT	alt_5612_new	0	1	1	1	0	0	0	1	2	0
CCCTTAATACGATAGT	alt_5612_new	16	58	28	21	43	25	73	24	67	23
TACGTATGTCGATCTG	alt_5612_new	5	16	4	7	9	6	11	3	4	3
AGACCCGGGTGCCTTT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TTTGTCTTTTTTACTC	alt_5612_new	8	7	9	2	3	8	5	7	6	7
TGCGACGTTTGTCCTG	alt_5612_new	7	8	8	2	15	9	14	7	10	6
TACGACTTAAATTAAG	alt_5612_new	27	32	38	39	46	22	31	20	41	34
GTTAGTATTTACCTCG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GCTTGACAGGGCCCGG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
ATTCCCCTGTCTAGGC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TAAGTGTGACATATAC	alt_5612_new	29	34	31	32	35	34	54	33	45	25
GGCAGGAACTCCGGCA	alt_5612_new	50	49	44	47	45	35	71	48	54	33
TATTGCAAGTCGCCAG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TTGAGATATTTCCCGG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
TCGGTTGAACAGCCAG	alt_5612_new	45	60	41	30	38	30	40	23	47	31
AGCAATAAAATGTCGG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GTGCCCTTAGCGGCTA	alt_5612_new	4	1	4	2	9	2	5	2	3	2
TTTTGCACAGCGCCTC	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTTCGTAAACG	alt_5612_new	6	8	1	6	7	3	7	8	13	1
TCGTCAAGTACGAATA	alt_5612_new	0	0	0	0	0	0	0	0	0	0
CTTGAAAATCACATAA	alt_5612_new	3	6	6	11	9	11	3	4	6	5
TCTACGGTTCTGTTGT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
AACTCGCTATTCAAGT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
CATACATCAGCTTCGT	alt_5612_new	26	45	36	30	46	19	48	20	52	32
GTATTCAGTGGGCCAC	alt_5612_new	14	21	15	20	27	23	25	10	19	8
TTAAGCAACCTAAGAA	alt_5612_new	16	45	37	51	37	33	54	17	58	35
ACTATGGTTTACGTTT	alt_5612_new	13	12	14	8	3	7	15	8	15	9
TTAGGTGAGTCCACCT	alt_5612_new	2	4	4	4	6	0	3	7	8	3
TGCGGCTATGTGTGTT	alt_5612_new	7	12	17	12	22	7	17	11	12	7
TATAAGTTCTGCTCTC	alt_5612_new	5	7	7	7	7	8	9	5	7	6
TCGTGCGTAAACGGTG	alt_5612_new	14	34	17	29	41	18	28	15	27	15
ATCCATGTCCTTTTCG	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GACTTGCATCCTATTG	ref_5612_new	144	138	132	107	151	115	137	105	153	121
TCCAGGCTAATATTTT	alt_5612_new	13	23	25	24	26	24	28	12	28	19
TACTCATAATACCTTC	alt_5612_new	15	12	7	5	21	9	8	15	11	4
AGTTTCTTTTCGGTTT	ref_5612_new	131	136	194	148	157	147	163	138	175	124
CTTCGCGTATCTAAAT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
CGGTAATTGTGTATGT	alt_5612_new	7	7	5	5	12	10	17	4	13	7
ATATTCGATCTTTGAT	alt_5612_new	0	0	0	0	0	0	0	0	0	0
GTTACAGTCATCTATA	alt_5612_new	39	46	42	32	52	39	48	39	52	36
CGTCCACACTAAATCG	alt_5612_new	7	7	7	9	12	6	4	7	8	6
GTGGCCAGTGCATCCA	alt_5612_new	32	32	30	18	30	12	33	34	40	27
TCGAACGCGCGAAGTC	alt_5612_new	8	14	7	6	8	13	9	10	12	6
GCTAGCGGCTTCCTCC	alt_5612_new	6	15	10	10	13	6	19	8	14	8
ACGTATGTACTCCTTC	alt_5612_new	83	112	124	91	120	100	155	83	135	81
TTTTGTGGCAGTCACC	ref_5638_new	19	32	30	18	21	15	32	20	22	24
TAGGAGCGTTCTGACA	ref_5638_new	46	74	55	29	72	48	56	52	73	41
ACTGAGTGGAACAACA	ref_5638_new	267	377	320	268	412	282	395	275	378	273
GTACAGCCATTGTCTG	ref_5638_new	46	70	55	32	72	38	67	35	66	35
TCGATTTTTTGTACCA	ref_5638_new	4	4	10	7	6	9	5	5	7	2
CATTTCGATATGCGAA	ref_5638_new	10	25	10	9	11	7	23	11	10	9
CGATTGGGGTCTAGTG	ref_5638_new	68	73	36	67	78	62	77	42	69	54
GCACGCCCCGGTGGTC	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TCGCGTTAGTATATGT	ref_5638_new	13	25	20	18	19	22	17	14	22	15
CCAATCGGAGAAAATT	ref_5638_new	4	2	11	10	8	8	7	9	12	4
TTTATTATGTCAAACT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
GACCCATTTTCCCGCA	ref_5638_new	112	121	142	124	171	119	142	114	158	115
ACCTCCGTCATAGTAT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
GGACTAAAGCATTTGT	ref_5638_new	69	106	90	80	93	73	122	72	101	76
AGCAAATCCAAGCGCC	ref_5638_new	21	40	33	39	48	27	47	36	39	21
CATGCCATTGAGGAGC	ref_5638_new	26	43	20	24	38	23	38	23	35	19
CGGGTTCTCTGCAGCC	ref_5638_new	11	16	11	11	26	7	27	12	31	6
AACTTTCCTTGCCATT	ref_5638_new	14	24	12	14	18	24	26	22	23	19
TCCCCGCGCCTCCACT	ref_5638_new	8	6	8	6	14	2	15	6	8	4
TGTAAGACGATCTCCT	ref_5638_new	10	8	16	14	15	6	9	6	11	5
ATTTCGGCTATGCGCC	ref_5638_new	84	122	90	67	114	70	109	75	162	80
TTGATTTACTCCTCCT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
AGGAGTGTTTTCCTGT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TAGCTCAACACGGCAT	ref_5638_new	52	87	82	64	85	47	87	45	104	52
TGGCAGATTTCACAAT	ref_5638_new	44	47	54	29	43	43	46	41	50	32
CCGCATCCGGCCGTTC	ref_5638_new	0	0	0	0	0	0	0	0	0	0
GCCTGCCTAAAATCCA	ref_5638_new	23	32	22	26	45	19	42	14	44	20
ATTCTAACTTATTTCG	ref_5638_new	74	82	92	57	87	61	78	51	81	66
TGGAAAGATACGGGCA	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TTTTTCTAGTTGGTAG	ref_5638_new	6	7	6	7	6	4	5	5	13	4
CTTGAAGTGTATTGAC	ref_5638_new	0	0	0	0	0	0	0	0	0	0
AGGAATCGACGCTCAG	ref_5638_new	2	1	1	5	2	2	3	1	0	0
TTGGTGATGCCTCCGG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TTTAAATGTTATCTGT	ref_5638_new	29	24	48	24	36	21	35	20	35	25
CATAATAGATATCTCG	ref_5638_new	53	80	73	62	77	41	99	40	91	46
ATCCGCTTGTACTTTA	ref_5638_new	12	45	30	28	39	19	46	18	52	16
TGTCTTGTGGGCGGTG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
AACGTCCGATTTACAG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
ATATTCAATAGCCCGA	alt_5638_new	99	132	157	145	159	125	154	125	191	102
GACATTACTCTTCGTC	ref_5638_new	0	0	0	0	0	0	0	0	0	0
CGATTGTTCCTAGCAT	ref_5638_new	13	18	23	18	28	11	28	19	35	16
CACATTGGTTGGTAGC	ref_5638_new	8	9	11	1	14	7	20	2	10	11
TAAGGAGCTCCTTGCC	ref_5638_new	23	31	21	23	25	14	33	10	37	26
TCTGCTCACTGCGTTG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
GGGATCGCCATGAATG	ref_5638_new	5	10	7	8	9	9	10	12	9	11
TTTGTGGGGGTCGCTA	ref_5638_new	19	23	21	28	22	17	24	17	22	16
CCACAGTGATACAGGT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
CATTTGCTCATGTTGC	ref_5638_new	9	5	5	6	7	4	17	7	8	6
AGGCCTATCGAATACT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
GAATTAATTACATTGG	ref_5638_new	48	51	47	42	59	35	76	40	63	41
CACGAGCTGGGTGTAG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TGCTCAAATTTAGATG	ref_5638_new	10	8	8	7	11	2	7	2	11	4
TACACGTGGCACTCTC	ref_5638_new	5	11	21	8	14	3	10	9	19	7
ATCAGGAAAACCCAGT	ref_5638_new	12	12	12	7	3	10	15	7	14	11
GTGTTTGCACCTTGCC	ref_5638_new	9	13	12	5	18	9	19	11	19	7
GTCCGGCCCCCCTACG	ref_5638_new	13	20	14	4	24	9	25	12	41	10
CTTAATTCTATCCCGG	ref_5638_new	28	38	37	25	38	25	51	24	49	29
AAGTATCTAATTGAGC	ref_5638_new	14	11	22	12	24	16	18	26	21	16
CAAAATGCTTTACTTG	ref_5638_new	38	47	42	34	59	31	39	42	49	26
GCCTCCGTTATCCAAA	ref_5638_new	53	47	53	53	60	51	56	41	71	32
GGTGCTTCAGGTTGTA	ref_5638_new	45	51	37	35	58	36	54	34	60	33
GCTGTCGGGTTCTTGG	ref_5638_new	0	2	1	2	2	0	2	2	1	0
TATCGCAGGTAATATC	ref_5638_new	5	8	1	4	9	3	12	3	7	1
CTCCATAGCATCTGAT	ref_5638_new	2	5	0	2	7	2	4	4	5	2
TCTACCTCGAGTGCTT	ref_5638_new	19	67	31	34	87	29	70	23	87	40
CGGCAGGCGAGCTTGC	ref_5638_new	22	28	38	28	20	27	35	31	30	26
AACCTAGGGGATTTTC	ref_5638_new	3	2	3	4	7	3	3	5	5	0
AGATGTAACCAGAATT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TTCTGATATGGCTTCG	ref_5638_new	55	52	51	51	49	38	48	33	49	36
GTCTGAGGCTCGGCCT	ref_5638_new	55	76	64	64	78	50	71	49	65	39
GTAGTTGTATTTCCCT	ref_5638_new	0	0	0	0	0	0	0	0	0	0
ATTTTGTTATTGTCGG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TTAATGTTGCTTTCTT	ref_5638_new	102	121	115	98	99	81	98	95	114	70
GTATATAGGGTATAGC	ref_5638_new	71	94	82	56	92	58	83	62	107	57
CCAAATGCCAACGACG	ref_5638_new	41	48	40	47	48	25	34	24	58	27
GCGAGCCCGTCTAGTA	ref_5638_new	0	0	0	0	0	0	0	0	0	0
CTTTACGCCGGTCGAC	ref_5638_new	5	14	12	8	18	4	13	10	17	10
CTCGCATCTGCATTAG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TCCGTATCGCACCGCT	ref_5638_new	49	62	38	48	77	38	75	47	64	38
CTATTGAGAAGCATTC	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TACTTACTACCGTTCG	ref_5638_new	12	32	11	12	28	8	36	9	35	7
GTTTGCAACTTGCTAG	ref_5638_new	43	47	40	43	54	39	67	46	73	46
TATTCCCCATCAACGG	ref_5638_new	25	87	37	33	112	37	98	33	118	21
TGACACCCCTGGAATC	ref_5638_new	0	0	0	0	0	0	0	0	0	0
GGTTCGAGTGTAGAAA	ref_5638_new	35	37	32	33	47	28	53	30	60	22
TCGCACAGTTGGTATC	ref_5638_new	11	7	3	2	23	5	9	7	13	6
TGCAGCCCGCTGTATG	ref_5638_new	24	29	8	16	38	15	27	18	31	19
CGCATCAAAGGCCTCC	ref_5638_new	0	0	0	0	0	0	0	0	0	0
TTGTGTGCTGAGCGGT	ref_5638_new	3	9	5	0	5	1	10	3	5	1
GCTGTTCGGTCTTTAC	ref_5638_new	14	29	29	17	12	21	15	12	34	12
CAGATGACACTGGTCC	ref_5638_new	10	15	11	22	21	18	12	16	11	23
TTGGATCCTGAACTAT	ref_5638_new	13	20	21	19	34	13	25	14	33	10
CTGGTAGGAACAGGGA	ref_5638_new	27	30	22	22	19	25	36	32	14	25
CGCGTTAACGTCCATC	ref_5638_new	25	42	35	33	50	28	39	35	56	30
AGGTAGGCTTTGACGG	ref_5638_new	52	54	49	48	48	40	45	39	48	29
GAGCATTGAAATCTTC	ref_5638_new	52	91	76	64	81	58	108	65	103	50
TTTCCATCACTCAACT	ref_5638_new	34	62	57	52	35	42	56	22	70	29
GTCGCCGGTTACTCGA	ref_5638_new	18	30	15	22	14	11	30	18	23	18
CTTGACCAGAGAAATG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
AATCAGCCCTTACCCG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
ACGTTTTGCGGCCATT	ref_5638_new	9	21	17	20	20	8	21	14	22	17
TGAGATTTTATCAAAG	ref_5638_new	0	0	0	0	0	0	0	0	0	0
GAGTAAAATTGCCAGA	alt_2515_RC	61	83	58	58	70	50	73	67	85	51
GACCCTCTCTAGCCTC	alt_2515_RC	10	17	26	19	19	24	21	15	29	19
GGCCTGTCCTAAACGA	alt_2515_RC	16	11	7	7	19	6	16	14	22	10
TTCAATATTTTTGAGA	alt_2515_RC	7	17	14	15	14	11	21	11	11	11
CCCATCTCGCGTAGGA	alt_2515_RC	0	2	0	1	0	1	3	1	4	1
AAACATCTACAATCGC	alt_2515_RC	12	20	10	12	19	19	19	12	17	21
TTTTATTAAATAAGCA	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
TGGATTAAGGAGTTAC	alt_2515_RC	6	10	11	4	15	11	20	7	14	12
GTCGTACGCCCTTCAA	alt_2515_RC	211	274	281	213	299	212	318	211	309	186
ACCTCAGACACCGGGT	alt_2515_RC	17	45	34	37	52	33	41	39	37	18
AGCCAAATATAGCACA	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
ATGTGGCAATTTGAGC	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
GAACCTTTCTACACTA	alt_2515_RC	9	9	7	5	10	5	10	7	9	5
CAGCATTAGAAAATCT	alt_2515_RC	11	11	13	6	9	11	8	6	7	5
CGTAGCTTAAAATATG	alt_2515_RC	12	24	13	12	17	10	18	16	14	11
GCTACTTGTATTAAGT	alt_2515_RC	5	4	3	2	4	3	6	4	6	4
ATGTACGTAAGGTGTC	alt_2515_RC	1	2	1	0	1	2	1	0	2	0
TGTTCAAGGACGTTCG	alt_2515_RC	5	7	12	12	16	7	10	9	18	10
TTTGCGTTATCTTGAT	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
TGCCAAATATAGCACA	alt_2515_RC	338	454	392	336	425	376	434	301	496	272
CTTTTTGGGAAATCTC	alt_2515_RC	2	7	10	8	8	6	10	5	13	13
CGCTTTTATTATTTGA	alt_2515_RC	14	20	16	12	21	18	25	16	35	12
GATTTCAGAGGTTTTC	alt_2515_RC	11	15	18	17	13	12	17	14	18	8
AGCATTGCTGCAACAT	alt_2515_RC	11	10	12	12	16	10	11	11	7	9
CCGGAATTTGTTATAG	alt_2515_RC	87	91	92	70	93	61	115	74	126	70
GTTGAGGTCTAGTTCT	alt_2515_RC	40	46	29	36	33	27	42	21	54	25
CACCACTCCTCGAACC	alt_2515_RC	29	61	50	53	61	42	64	27	52	38
TAACAGCACTGCGTAC	alt_2515_RC	24	36	34	19	39	22	45	25	30	25
CCTCGCTTTATTGGCC	alt_2515_RC	86	182	117	115	188	95	202	95	172	78
CTGCAGCGATGTCGCC	alt_2515_RC	0	5	2	2	3	2	3	2	2	0
TAAGTAGGGTGGTCTA	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
TTTCGCGTGGGCTAAT	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
CTTCTCGCGCTGCGGC	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
GTAGAATGTTTGCCAG	alt_2515_RC	3	8	1	5	0	1	3	3	0	2
GCCATTTTCCTGTATG	alt_2515_RC	27	45	88	36	55	37	47	41	53	37
CTGGAGAAGGTTATTC	alt_2515_RC	15	28	17	15	21	15	13	7	29	6
GCGTGGACTCGTCATC	alt_2515_RC	32	59	42	36	68	34	47	32	65	22
GCTTTCCAGTGTCCTG	alt_2515_RC	24	22	24	19	23	20	34	14	25	19
CGCCTGCGAGTATTGG	alt_2515_RC	141	265	196	195	339	194	236	176	293	156
TTTCCATTTCGGATTA	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
TCTAGGCCTTCATCAC	alt_2515_RC	60	88	76	62	129	74	115	57	114	52
GCTCGTTGGCAGTGCC	alt_2515_RC	31	63	68	48	62	47	71	40	72	48
ATACTACGGATGGCTT	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
GGTCCCAGTCCATAGG	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
ATAGCAACCCGAACGT	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
CCCCCAAATGAGTCAC	alt_2515_RC	6	30	17	26	24	14	26	16	37	10
CTAAGGTTTGCAGTAG	alt_2515_RC	10	12	6	9	16	10	12	6	15	5
TATATGATGACCGGGG	alt_2515_RC	35	53	54	44	56	45	50	42	65	32
TTAGCTCGCTCTTTAG	alt_2515_RC	0	0	0	0	0	0	0	0	0	0
GCCCGACATCCTGTGG	ref_2061_negative	0	1	3	0	0	0	5	0	0	1
GCTACATCCACGGGGA	ref_2061_negative	19	18	27	22	22	15	24	18	24	21
GCATTGTATCTCTTTT	ref_2061_negative	125	102	135	136	119	144	141	106	134	111
AAGCCCCTGTATCTGT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
AGTCTACCAACCATAG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CTGCGCTGCGTCCTCT	ref_2061_negative	39	50	47	55	42	42	42	36	47	47
CCTGATTAGTGGTCTC	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GGGTCAAGTCCAAATG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TTTACCCCGTGTAAGG	ref_2061_negative	5	8	2	8	17	7	10	10	10	8
GCGGCTTTAATTGATT	ref_2061_negative	17	11	17	4	15	14	23	16	26	10
TCCAAGGTCAGCTGAA	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GTAAGTATATTTTAAA	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CTTCAGTTTGCTAATC	ref_2061_negative	9	24	25	18	27	14	23	17	20	12
TGCCAGCCTTACGGGA	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CCTACCCTCCCGGTCA	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GGTAAAACTGCTATTG	ref_2061_negative	55	47	73	50	56	59	54	38	71	41
GACATGCTTTTTGAAA	ref_2061_negative	16	18	22	21	20	16	25	19	22	19
ACAAGCTTATGCTCAC	ref_2061_negative	1	2	2	1	1	0	2	1	1	1
CTTAGTTAGGATAAGC	ref_2061_negative	18	29	32	19	27	30	27	28	26	21
TCTCGAGACGTGAAAT	ref_2061_negative	23	29	29	34	28	20	32	26	41	23
AGTTTAGATTACGCTT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GCGACTACTGGGCGGT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GTGAAATCATCCTGTC	ref_2061_negative	49	49	63	38	57	47	44	47	53	34
CGAGGGGCTCCGGGAG	ref_2061_negative	3	8	9	14	5	5	6	4	5	3
GGTCCGAATGAGTAAT	ref_2061_negative	22	35	45	35	32	26	28	29	33	29
CGGCATTTACCTGACC	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TCTAAATGCTTGTCCA	ref_2061_negative	13	18	15	15	15	17	21	22	13	13
GCGAATGTTTTGAAAG	ref_2061_negative	3	3	0	1	1	2	2	1	1	1
TGTGTTTATTGTCGGT	ref_2061_negative	10	18	21	22	10	14	16	14	21	13
AGTGTTGCCAGCGGTA	ref_2061_negative	105	99	125	88	93	87	108	81	121	97
GTCACGTGGTCCGCGG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TCTGACCCACCTCTCT	ref_2061_negative	99	97	149	139	128	142	92	120	119	110
TAGCATGGGCACTTCG	ref_2061_negative	11	16	10	4	8	15	19	12	18	9
CGAGTCTGCAAATGTG	ref_2061_negative	1	8	1	7	4	2	5	1	4	2
GGGTATATGTTGCGCG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CCTGGCCTCAAGTCCA	ref_2061_negative	10	16	22	15	14	5	26	9	22	17
CTGCTGTAGGCGGTAT	ref_2061_negative	13	15	11	9	16	10	11	6	12	8
GATGTGTTCGCTTTCA	ref_2061_negative	78	125	105	96	128	100	157	94	164	91
TCTTTTCCTAAAACAT	ref_2061_negative	2	2	4	1	6	2	3	1	2	4
GAACTCTTCTCGACTG	ref_2061_negative	17	19	22	12	12	10	6	7	16	12
TCTTCTCTGCGTGCGT	ref_2061_negative	21	16	20	9	19	17	19	17	19	13
AAGTTATGCTCTCGCC	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TCTGGCCCTGCTAAGA	ref_2061_negative	64	79	72	72	67	65	68	59	74	70
CTGCGCGCCTCCTCGC	ref_2061_negative	9	24	19	8	17	12	9	14	19	14
CCCGAGTCAATTCTGG	ref_2061_negative	17	27	26	19	28	19	22	14	21	14
TCACTTGACATCCACA	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GGAAAATTGAGTGGCT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TTCTTCTTTGCATTGG	ref_2061_negative	56	44	55	48	43	33	38	45	45	40
TCCCCGCTGGTGAGTT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CCATCAAACTGTATCT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CTCGTGCCCGTTGCTG	ref_2061_negative	47	46	55	43	40	36	46	42	52	53
GTTACTGCCACTAAAT	ref_2061_negative	14	9	22	17	10	6	14	10	15	11
CGCCCCATTAATGTTG	ref_2061_negative	14	18	20	18	13	18	12	14	10	11
GAATAAAGCACTTGTC	ref_2061_negative	87	104	125	87	86	76	114	65	108	78
CTGAGTGGAATTGGCC	ref_2061_negative	0	4	2	6	5	1	4	3	5	2
CTTTGTGATGAAGCTT	ref_2061_negative	12	8	16	12	11	8	7	13	12	13
GGGGATCTTTTTGGAG	ref_2061_negative	8	2	7	9	1	1	6	5	9	3
TCCATTCCTTCACGAG	ref_2061_negative	6	6	4	3	9	3	10	8	10	7
TATGAAAACGCAGTAG	ref_2061_negative	0	1	1	3	1	2	1	4	2	0
GGTGCGTTCTTTCCTT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CTCTCGCGATTCTAAG	ref_2061_negative	8	4	9	12	5	5	6	5	7	5
AAGGTTTAATTCGCTT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GCTGTAGCTCTAGCAC	ref_2061_negative	37	52	35	40	49	38	57	27	30	25
GCTACTCTGGAACTGT	ref_2061_negative	38	26	31	33	34	32	50	20	29	25
CATCGAATTACACGGG	ref_2061_negative	15	15	17	18	15	18	15	15	14	18
CGCCGTGTGAGGTTGT	ref_2061_negative	16	18	19	26	27	21	20	20	34	12
TCCGCACCTGGGCTCC	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CGTGCTTCTTTTGCAT	ref_2061_negative	34	44	41	49	34	31	42	32	47	34
TAGGGACGTCACCCGG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GCGAGTTTTAGCCTCT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CCCCAGGACGGTCATC	ref_2061_negative	4	11	4	4	23	1	13	3	17	4
TAACCCTGTATTCTCG	ref_2061_negative	57	79	66	81	78	58	75	58	62	56
GGTCACTTTCTGGACC	ref_2061_negative	3	6	1	5	5	5	2	2	4	5
CTTCATAGCGCGCGCA	ref_2061_negative	4	4	4	4	4	3	3	4	2	2
TTTCTTGATGACCCCC	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CTGACGTGGCCTGTAT	ref_2061_negative	16	21	13	20	15	15	20	18	16	13
AACCTAGTTCAGTGCA	ref_2061_negative	10	15	13	7	15	11	12	6	9	10
ATCGTGTATGCCATCA	ref_2061_negative	24	16	18	25	13	17	13	22	13	19
ACGCACGCTTAGGGAA	ref_2061_negative	31	38	39	33	26	23	30	34	55	32
GTCTGTAGCCTGTTGC	ref_2061_negative	8	18	9	13	16	14	11	14	8	13
TCAACATCGCGGGTGA	ref_2061_negative	7	4	7	8	5	3	6	3	6	5
AAATTGATTAACGGGT	ref_2061_negative	0	2	3	3	6	3	2	1	0	1
GGCCTTAACTGAACTC	ref_2061_negative	9	20	16	14	21	10	33	12	15	14
TGAACGGTAACCTACT	ref_2061_negative	18	5	15	6	15	8	10	10	8	14
GTTGTCTGGTCTGGCC	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TTATACGAGGATCGTA	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CCCGCCCCCCTCCAGG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CAACTTGGCCCTCGTG	ref_2061_negative	8	3	8	9	4	6	5	7	5	5
TTCTTTGTTACCGACC	ref_2061_negative	17	19	19	10	18	20	15	14	13	16
TTGCAACCCTGTTCTA	ref_2061_negative	4	2	2	2	7	1	1	1	1	0
GCGCATCTGATTCCGT	ref_2061_negative	19	19	33	27	38	22	29	22	38	27
TAAGGAAGGCTATTCG	ref_2061_negative	127	152	144	163	171	137	166	131	149	119
TCTTCTAGATCGCTCG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TAATGTAGCGTTAGCA	ref_2061_negative	82	105	109	89	70	95	77	67	89	82
CCTTACCCTCCGTAGT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CCCTGAATTCTCTTTA	ref_2061_negative	14	12	17	13	15	9	12	12	16	6
TCCACATCTGTTCATT	ref_2061_negative	4	3	9	4	17	3	9	6	8	4
AAATCGAATGCTTCGT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TCGTACTCGTGCTTCT	ref_2061_negative	51	53	62	50	60	56	66	36	57	42
CTTCACTCCGGTTTTC	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
CAGGGAGGGTGCGGTC	ref_2061_negative	2	0	2	0	0	2	0	0	0	0
GATTGCCGTTTTCTGT	ref_2061_negative	59	49	45	41	48	44	35	41	52	46
GCGAAGCATCAAACCA	ref_2061_negative	38	51	37	68	61	44	49	33	60	53
TGCTGGGTTTTCGTAT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GACTTTCGTCGCGCTT	ref_2061_negative	22	25	25	30	21	25	16	19	21	29
GCTCATGCTTTGCCGG	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
ACTGGTTCAACTCCGG	ref_2061_negative	22	14	20	13	27	8	25	16	14	17
TGTAACTTTCGGGGAA	ref_2061_negative	5	11	11	11	11	6	11	10	8	15
TAATTTTTGTTATCCT	ref_2061_negative	29	21	43	32	26	32	31	25	36	27
GTACTGTCTGCGCAAG	ref_2061_negative	12	18	5	8	12	9	19	6	4	5
TGTCGTGCTACCGAGA	ref_2061_negative	11	19	16	11	12	12	21	9	11	7
TATGCTTTTTTTCTCT	ref_2061_negative	10	3	13	8	6	9	7	10	15	2
GAAAGTCGTTAGCAGT	ref_2061_negative	12	10	7	6	16	5	13	7	13	13
CCATCGAACTGTATCT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
GCATTCTGACGGGTAT	ref_2061_negative	10	16	13	10	10	5	6	6	11	2
CTCAGCAGATGCAAGG	ref_2061_negative	8	8	14	6	1	7	16	12	7	4
CGCGGCATCTTGCAGC	ref_2061_negative	4	4	3	3	5	4	8	0	5	2
GCGGCATTCTATATTT	ref_2061_negative	39	29	54	42	43	31	27	30	31	31
CAGCAAGAAATCCTGG	ref_2061_negative	83	158	106	117	154	84	146	100	159	78
AACCTTCCGCGAGGAG	ref_2061_negative	11	12	9	4	12	8	18	11	17	8
CCTGTCTACACTTCCA	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TGTTGTATTTGAATGG	ref_2061_negative	33	25	40	50	46	26	48	18	41	32
GCATACCCCTAATCTA	ref_2061_negative	13	12	9	11	14	12	10	9	24	16
TGAAATGGTTTTCTCG	ref_2061_negative	22	31	20	27	18	24	20	21	24	13
ATAGTCTTTTAATGCA	ref_2061_negative	5	4	8	7	8	6	8	3	3	7
GCATTCCAGGTCTCCA	ref_2061_negative	16	16	2	13	10	8	10	12	7	6
GATCATCATCGCTGCT	ref_2061_negative	40	50	45	43	35	35	50	19	56	40
CCCGTTGTAGGGAGTG	ref_2061_negative	2	6	8	5	19	7	7	5	9	3
GCTGGCATTTTAGCGG	ref_2061_negative	9	17	24	11	17	9	27	14	16	5
TTGCAGGTCCACCCCA	ref_2061_negative	19	25	12	15	25	17	22	10	18	14
ATCAAGATCACTTGCC	ref_2061_negative	74	81	99	66	76	72	77	87	97	86
TTCTTCTTGTCTCTCC	ref_2061_negative	74	97	124	117	98	90	89	99	81	76
GTATGGCGAATTCTGT	ref_2061_negative	34	37	42	35	41	36	39	44	45	47
AACATTAGAGGGGACT	ref_2061_negative	0	0	0	0	0	0	0	0	0	0
TAACTTATACTATTTC	ref_5201_reverse	24	26	38	35	17	50	10	32	14	31
TCATATCATGGCAAGC	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
CTAACTACCGTGTGAT	ref_5201_reverse	1	3	2	0	1	1	0	1	3	1
TCCTATATCCTCCTGC	ref_5201_reverse	70	41	95	53	42	57	46	53	44	36
TTTGTGGTTGTTAAAT	ref_5201_reverse	22	21	30	19	16	18	18	26	18	22
GCGTCTTTACGTACAC	ref_5201_reverse	68	42	62	53	51	56	50	47	43	59
AAGTGCTCGCAACGAC	ref_5201_reverse	307	183	386	357	216	297	216	306	182	272
TGTCCCGGCACCCCGT	ref_5201_reverse	46	17	43	50	17	36	31	50	8	30
GCAGTCTCGTCACACC	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGACGTCAACACG	ref_5201_reverse	3	2	9	4	5	6	6	5	6	2
TCCTTATTGGGAGGCT	ref_5201_reverse	138	76	152	111	69	140	82	126	82	110
TGTGACCTTACGCTAA	ref_5201_reverse	27	24	38	33	17	29	15	26	25	29
TATTGCGTAGCTGATG	ref_5201_reverse	4	5	11	7	4	12	5	13	13	11
GATTTGTATAAAACAT	ref_5201_reverse	56	27	63	69	33	66	21	57	34	43
TGGTTCACCGCCCATC	ref_5201_reverse	8	4	8	10	10	8	8	12	3	4
TCGTTAAAATATACGC	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTAATGCATTATA	ref_5201_reverse	17	13	27	23	12	19	18	15	13	19
AGTACATCGCATGATT	ref_5201_reverse	11	5	13	9	9	10	3	8	8	12
TAGTGGGTGGATCTTA	ref_5201_reverse	13	8	12	12	3	4	7	7	7	14
GTTAAATTAGCGTCAG	ref_5201_reverse	220	145	274	241	113	215	124	210	142	201
CTTCACGTCTGTGCGT	ref_5201_reverse	307	227	391	347	218	310	328	277	257	271
TAGACACCGAGTGCGT	ref_5201_reverse	158	86	189	177	110	163	104	162	115	153
ACTACAATTCCGCTCA	ref_5201_reverse	36	21	24	47	24	28	25	39	22	25
TCCGTAGATAGGAGTT	ref_5201_reverse	6	2	11	6	6	1	6	5	1	2
CCCTGTTAACCTGTAT	ref_5201_reverse	79	71	87	67	60	61	59	75	83	75
CGTTGATTCAAAATCG	ref_5201_reverse	77	51	75	80	65	65	45	73	60	61
GTACTGAATGGACGTT	ref_5201_reverse	21	11	27	16	12	13	10	13	15	15
TGTGTTATTATCTTGC	ref_5201_reverse	49	18	50	43	16	56	35	44	41	41
CGGCCAAAACAGCAGG	ref_5201_reverse	34	13	23	27	11	26	18	25	16	16
TGCGCGCAGAACAGGT	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGCCATGGCCTAT	ref_5201_reverse	5	1	3	4	3	7	1	2	1	2
CATGCGAGACCCCGGA	ref_5201_reverse	28	27	42	37	22	40	26	24	22	33
GGCTGTCTAGGGGTAC	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCAACCATTGTG	ref_5201_reverse	14	8	16	11	4	9	17	8	12	9
AGAGTTGTGTCCTCGA	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GACCGGTACTGTGGAC	ref_5201_reverse	20	13	12	15	18	15	12	15	10	11
CCCGGGTGTCCGTTTC	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GTCATATTTTTAGTAT	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCCGGTGTAATAG	ref_5201_reverse	196	138	257	238	162	176	159	187	167	167
GGATTATGGAGTATAA	ref_5201_reverse	56	50	93	77	65	53	55	70	45	61
TAGTATGATGGCTCTG	ref_5201_reverse	69	33	88	96	46	81	35	64	39	59
TCTCAGCCTTGTTTTT	ref_5201_reverse	3	7	4	2	17	3	15	8	14	4
TATGGCGGCTATTGGG	ref_5201_reverse	82	36	99	103	50	98	56	82	58	83
GCGGCTACTTTTGAAG	ref_5201_reverse	92	69	95	80	90	75	71	81	82	54
GTTGGCCGTTCGTGTC	ref_5201_reverse	35	28	70	47	39	44	33	43	30	32
TGCTGGACAGTGGGGG	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
AGTACGCCGTTACCGC	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GTTACAGTTAATGGCG	ref_5201_reverse	7	1	3	6	3	5	4	7	4	6
TCGAATTTTGAGCTCA	ref_5201_reverse	50	37	77	66	31	75	40	65	42	70
TGTGGCGGCGCTGTCG	ref_5201_reverse	28	16	50	38	30	41	24	40	30	25
AGGCGGTGCCCGCGTC	ref_5201_reverse	7	8	11	14	6	12	6	6	9	10
GACTTATTGGTGACTT	ref_5201_reverse	55	39	51	44	49	70	26	57	29	42
TTAGGCCGTGTCCACA	ref_5201_reverse	76	40	87	104	55	63	61	77	56	61
GACGAGTGATTGGGTC	ref_5201_reverse	32	25	34	14	22	33	16	26	26	21
GAGGGTTCGTCCTCCG	ref_5201_reverse	88	67	123	78	52	108	71	62	55	80
TAATCGTGATCTAGTT	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GCAGGAACGGGTGGTT	ref_5201_reverse	88	63	108	86	43	96	45	94	40	85
ATAAAAGGTGCAAAGC	ref_5201_reverse	17	26	33	36	18	23	34	30	39	14
TAACTTATACTATGTG	ref_5201_reverse	23	22	29	30	16	21	17	36	19	17
TCGGCGATAAATTTCG	ref_5201_reverse	55	43	88	52	42	42	33	60	45	48
GGCTGGCTTTTATTGT	ref_5201_reverse	73	66	92	76	59	78	59	80	73	72
GCGTCTGCGATACCGT	ref_5201_reverse	2	1	4	1	0	1	4	2	1	4
TTCCCGACCTTCACGG	alt_5201_reverse	12	41	30	22	40	17	45	29	60	16
GTACTGAAGTAGGATT	ref_5201_reverse	28	18	26	21	10	21	12	23	13	21
TGTCTTCCGGTCTAAG	ref_5201_reverse	11	5	7	6	9	9	8	10	4	6
GGAGCTGGCCTCTTAT	ref_5201_reverse	96	53	115	88	51	82	64	94	40	85
GCTGCGGTCCTCCCAA	ref_5201_reverse	76	41	78	71	36	68	28	57	40	62
CATACTGAGCAGAAAG	ref_5201_reverse	30	15	31	25	11	22	17	29	17	31
CCGACTGGTGATGCGC	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
CAAATCAGTGGTTCTG	ref_5201_reverse	11	11	15	9	11	14	14	18	12	13
TTCGTGGTCTCTGGAT	ref_5201_reverse	26	8	38	19	11	22	13	20	22	29
TTGATTGCTCGGAATG	ref_5201_reverse	327	206	441	344	186	338	196	312	240	302
GATTCCCGCCTAACTG	ref_5201_reverse	5	2	9	9	6	1	3	4	4	8
TGGTATATGTGCTGAT	ref_5201_reverse	87	61	99	71	56	72	62	73	51	67
ATCTTTCAATGGCTGA	ref_5201_reverse	28	20	34	28	9	21	14	29	19	26
GCCGGGCGCCTCTCAA	ref_5201_reverse	54	17	52	35	24	29	28	34	26	41
TTAGGCTGGAGTGTTA	ref_5201_reverse	11	5	20	19	11	13	8	14	11	18
CCTGGGCTCTTAGGCA	alt_5201_reverse	37	34	72	38	45	34	36	51	33	44
CTTACGCCTGACAACC	ref_5201_reverse	41	32	59	71	36	52	39	44	27	43
GGCCCCGGTTTGTCGC	ref_5201_reverse	49	26	70	47	31	43	30	56	37	52
GAGATGGTGCTACTAT	ref_5201_reverse	108	59	103	125	58	98	59	91	59	84
CTCTTATTCAGTGAGC	ref_5201_reverse	14	5	12	4	0	6	3	7	2	5
CCTGTGGCAGCGCATT	ref_5201_reverse	80	55	108	79	53	78	59	71	49	72
GCATCTCTGATCAAAG	alt_5201_reverse	108	97	105	132	113	89	99	85	110	84
GACTATCATAAGGTTT	ref_5201_reverse	42	30	40	45	22	30	32	31	17	39
ACTGTCACTGGCCAAG	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTTTACTGCCACG	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGCCGCTCAGTTA	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCGTCATAAGCGG	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
GTACTATTGTACCAAA	ref_5201_reverse	11	5	12	10	5	13	8	15	9	17
GCGCGATCGACACACC	ref_5201_reverse	37	18	47	31	24	20	34	38	25	36
TCCATCTTGATCATCC	ref_5201_reverse	65	34	71	47	37	70	51	49	42	66
CGGACTACGTAGCGTA	ref_5201_reverse	4	0	5	2	5	1	4	5	3	4
AGGTTTACAAGTTGGT	ref_5201_reverse	86	53	118	105	62	108	42	97	54	85
GGCGTGCGGATAAGGG	ref_5201_reverse	205	131	284	250	120	186	137	203	116	176
TATTTCTCGTCAGATC	ref_5201_reverse	114	57	121	104	53	76	62	83	67	62
ACACTCCTCGGCCTTC	ref_5201_reverse	0	5	0	1	1	0	4	0	3	0
CTCTCCTGTCGTGTAG	ref_5201_reverse	15	22	14	19	20	14	24	14	19	13
CATGGGATTCGACTGT	alt_5201_reverse	24	40	21	22	43	26	43	24	43	13
TACATTAAATCTGCTA	ref_5201_reverse	0	0	0	0	0	0	0	0	0	0
AATGTGTTTTCCAAAC	alt_5539_reverse	61	68	84	63	50	46	63	52	55	53
ATTACGTATGGCCATA	alt_5539_reverse	74	36	76	65	34	63	43	58	36	50
TCGCTGGTTTTTTGCT	alt_5539_reverse	11	15	22	15	7	19	11	15	8	14
GTCATCGGGATTTTCG	alt_5539_reverse	77	60	100	98	58	77	58	88	85	78
CACTTACCTCATTTAT	alt_5539_reverse	1	9	3	2	14	3	14	4	17	3
CCTTACTCTAGAACAG	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCCTATTCTGAAG	alt_5539_reverse	257	184	301	222	208	253	221	241	208	232
AAGACTGCGGGTATCG	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
TCAATTCGATATAGGA	alt_5539_reverse	176	122	196	179	128	170	124	161	130	170
GCTGCGCCCTCTAAAC	alt_5539_reverse	49	58	61	49	39	30	50	51	54	50
CCTTGGTATTTGATTT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGCTGCTCTTAGT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTACTAACACCGA	alt_5539_reverse	16	21	12	23	11	16	14	12	23	9
ATTGCCGTCGTGTACG	alt_5539_reverse	89	82	84	76	76	95	116	78	99	58
ACAGCTTCGTCCAGAA	alt_5539_reverse	52	30	49	48	33	41	37	40	46	39
CCTCTGCTAGGAAACC	alt_5539_reverse	3	5	6	6	4	4	5	3	3	5
TGCCTGATGTACTGCG	ref_5539_reverse	160	129	213	219	130	179	185	145	173	134
GAAGCATTATATGTGC	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CGTCACTCGTCATGTT	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCGAGCCAACCGC	alt_5539_reverse	7	12	16	17	11	16	9	7	10	5
ATATTTGCAGGACGTT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
TGAGCCCTCCGGCAGA	alt_5539_reverse	35	21	55	39	21	35	25	25	36	26
GTGTACGTTTAGGAAT	alt_5539_reverse	79	56	47	47	40	33	55	41	55	45
TACTGTTCACTCATGA	alt_5539_reverse	7	7	9	10	8	8	5	8	12	8
GATAATGCAGCTCCTT	alt_5539_reverse	33	31	60	63	44	38	36	50	36	34
CTTTGTAAGATAATTT	alt_5539_reverse	38	22	51	44	29	43	25	21	22	30
GTTGAGTTGTATGTGT	alt_5539_reverse	107	114	115	113	99	121	98	108	115	112
TTAGGAAGTAAGTTGT	alt_5539_reverse	111	127	158	178	109	157	113	112	140	126
ATAACCCGCCTTATTT	alt_5539_reverse	44	45	81	70	56	41	58	52	37	65
TCCATTCCGTTATTAA	alt_5539_reverse	15	9	29	24	22	9	18	21	23	15
TTAGTCACTTCCCTGT	alt_5539_reverse	29	32	28	38	28	19	40	22	30	20
TCAAACCTCGCCTCGT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCCTGTTCTGAAG	alt_5539_reverse	0	0	1	0	0	0	0	0	0	0
GGTTATAACGGGCGTT	alt_5539_reverse	49	46	54	47	38	41	46	35	49	49
CGGTCACTACATGATG	alt_5539_reverse	57	43	73	45	55	61	51	66	72	56
TCTCGACTATTGACTA	alt_5539_reverse	54	54	58	41	48	45	46	61	45	65
TCGTTCCACCCATCTG	alt_5539_reverse	38	45	62	45	43	39	66	42	44	42
TCGTCACTACACCGGA	alt_5539_reverse	23	24	28	31	34	16	21	23	20	27
CTCGCCCTGCTGATGT	alt_5539_reverse	20	5	10	7	8	3	10	7	11	7
AGTGAGATTGCGTTCT	alt_5539_reverse	56	42	77	76	49	48	32	63	34	58
TTCCCCGGGCTATAAT	alt_5539_reverse	7	16	12	12	32	9	25	11	30	5
GTTCGGGACCTCTGAG	alt_5539_reverse	56	48	55	41	26	41	41	33	43	35
TTCGCATAAAAAGTCC	alt_5539_reverse	183	150	204	192	121	199	154	166	144	159
CAAGCCTATGCCAAGG	alt_5539_reverse	74	94	107	68	91	77	90	80	109	72
GCCACAATGCAAGACT	alt_5539_reverse	28	20	36	31	41	33	26	32	33	27
CGAGTTGAGCAGGTCC	alt_5539_reverse	58	40	69	61	37	49	43	59	41	50
TTATTGGGCCGCATCC	alt_5539_reverse	135	96	152	137	76	123	101	128	101	101
AGCTGTGCAGCAGGGT	alt_5539_reverse	279	230	295	282	275	288	280	244	312	231
CACGCTCTCTCACCTG	alt_5539_reverse	40	46	56	50	62	45	49	45	57	33
CTGACATCGTCCAATT	alt_5539_reverse	57	70	64	59	62	56	73	65	65	61
ACGGTTAGTCGCAGTT	alt_5539_reverse	30	31	30	34	25	30	26	33	20	48
TGACAGCCGACATGTG	alt_5539_reverse	47	67	62	66	90	49	68	58	104	42
CACTCGCTGACTCTCG	alt_5539_reverse	144	115	178	146	100	152	148	132	148	129
CAACCTCGAACCAAGT	alt_5539_reverse	19	31	30	39	36	28	26	18	41	23
AGATCTCCGCGGATAC	alt_5539_reverse	136	117	196	162	134	134	137	145	137	144
TTGTATTATTTGTAGG	alt_5539_reverse	17	26	47	28	22	33	16	24	28	28
CCGATTGTCTGCCGCC	alt_5539_reverse	1	3	2	2	5	1	5	1	3	0
CCACCCTGCCGGGTAT	alt_5539_reverse	159	159	185	173	162	164	156	158	182	149
CCTCTCCATCCTTTCA	alt_5539_reverse	25	48	43	33	37	28	43	27	38	27
AGTGAGCGACCCGACA	alt_5539_reverse	48	47	57	43	39	55	43	44	55	51
TTTGCTTCGTCTCTCG	alt_5539_reverse	30	22	36	36	28	21	34	25	23	18
TACCATAGAGTTTGCA	alt_5539_reverse	68	49	94	72	53	80	74	81	68	69
CGGACTTAATTATGGG	alt_5539_reverse	102	52	97	74	60	82	71	93	82	97
GGGACGTGCTTTTGCT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CATGCGCGGCGCCTGG	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTCATGCGACGTT	alt_5539_reverse	62	27	53	58	36	39	44	35	40	44
TGTAATATTATGCCAC	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CAATCACGCAGCCAGG	alt_5539_reverse	33	40	57	43	40	43	33	38	38	33
GTCTCGATGACGTCAC	ref_5539_reverse	71	63	100	66	71	60	54	80	42	79
TTTCTGTTCACACACT	alt_5539_reverse	45	32	57	57	45	38	55	57	35	32
GCTCCGTACAGCCTAC	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTTTGCGAATGGC	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CTCGAACGATTCTGCT	alt_5539_reverse	33	22	22	25	15	26	18	21	11	17
TGTCCAGACGTGGGGA	alt_5539_reverse	123	128	193	119	114	140	115	133	122	121
TCGAGTCTCTACTGTA	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTCAGTTCGACTA	alt_5539_reverse	43	19	42	49	27	40	33	29	36	36
GTCGCATTCGCACTGA	alt_5539_reverse	46	49	61	63	38	54	39	48	42	48
ACTAGATTTCTTAGAC	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTAGCTATAGGGT	alt_5539_reverse	29	13	16	18	5	21	11	20	11	30
CGAGCTAGGCCGGAGG	alt_5539_reverse	36	43	46	42	27	36	65	39	68	32
CAGTTGATTCATTATA	alt_5539_reverse	503	436	581	555	417	535	449	451	457	496
ACGGCCTGATACGATG	alt_5539_reverse	74	52	102	93	57	73	57	70	70	78
TCTCCTGTTGAAGTTT	alt_5539_reverse	52	30	59	44	32	46	34	40	44	40
GCTGCTCTGTTTTTCT	alt_5539_reverse	57	30	66	79	50	50	31	53	39	40
TAAGGCCCACGCCTGC	alt_5539_reverse	20	20	36	22	9	20	9	21	16	16
AGGCTTCCATAAAACA	alt_5539_reverse	102	65	134	94	47	98	59	69	83	90
CAGTAGATTCATTATA	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
AAGATGCACGTTGTTA	alt_5539_reverse	37	34	66	64	37	58	36	60	46	32
CCTGGCTCTGAGTATT	alt_5539_reverse	19	30	39	21	17	22	20	22	20	13
TCTTGGACCTGTTTAT	ref_5539_reverse	34	35	37	38	27	22	23	31	20	29
AGCGACCCAGAGTCGT	alt_5539_reverse	228	185	301	236	163	217	179	184	184	194
TCCACCCTTCTTCACT	alt_5539_reverse	69	45	63	65	58	65	48	71	61	44
TCCCAACGCCGTCCGA	alt_5539_reverse	23	22	25	21	13	24	24	15	24	23
TCTGAGGATCCTAAGT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGAGCGGGCGACC	alt_5539_reverse	54	35	102	56	42	67	60	59	63	68
TGTTTCGATGGTTTGT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTACTTTTCTCTC	alt_5539_reverse	55	57	54	50	50	45	37	56	39	39
CCCAAAGTCGACGTTC	alt_5539_reverse	61	59	69	68	48	58	70	52	94	63
CGCGAACACAGGACAG	alt_5539_reverse	19	10	11	18	7	16	13	18	8	20
AACATTATAGGCAGGT	alt_5539_reverse	90	85	120	98	81	90	73	95	94	95
CGATCAACCCTGCATA	alt_5539_reverse	36	15	33	33	9	34	11	20	19	20
CGCGCGTGACATTACA	alt_5539_reverse	82	55	94	53	41	66	53	55	45	72
TAGACGAGTTCCCTCT	alt_5539_reverse	55	31	47	50	31	51	30	45	21	36
GTCACGATGTTACCTT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
ATACATAGTTACAACT	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
AGCAAATTCTAATGAC	alt_5539_reverse	0	0	0	0	0	0	0	0	0	0
CATCTCTATTCGTATC	alt_5539_reverse	755	493	958	827	528	715	492	762	536	705
TCGTATATGAACGCAT	alt_5539_reverse	97	77	112	98	91	91	78	95	66	85
TCAGTCGTAGCGCGTT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GAGTATCATCTCGTGC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ACGTTGGCAATACTTC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CCTGACTTGCAGCAAC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ATGTTAGGGTCATTGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TAAATCGAACGCGCTA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
AGGCAGATGCTTCTTA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TCGTTGTATTGATGTC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GGGGATTTTTTGAGGC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TAGACTTGAGCCAAGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CATGTAGATTTTAGCT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GATATTGCAAGTATAC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TCAGCACACTACCTGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TACTGTATTAACTGAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ACCTCCGCTGAAGATT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTCGTGCTCAGG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
AGTTGTGTACATAAAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GGAACCCTTTTAATAC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CTCTCACTCCGCATAC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CCGGGTTCTTGCATTT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GGTGGTTTGAATTGTG	alt_5424_missing	1	0	6	3	6	5	4	1	11	2
AATTCGGTTTGCGTCT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ATCTCACTGGGCACAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CCCTTGGAAAGCTGCT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ATCATCAAAATATCGA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTACGTTCTCCACAGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TGGGATACCTAAGTGG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GCAGTTTCGGCTGAAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TGGTGGCGCTAGGCTT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CTCCTCTGGTTTTAAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
AGTTATCGTTTCAAGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTGCATCCCTCTAACG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GTGTCTATTTGCAGCT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CAACTCTATTTCAACT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TCCCCGCACGCTTACG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GTCGAGCACCAAACCT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GAATCGTGCTCGATCA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGGCATGGGGTCTGAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TAGGCAACGGGCGCTC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TGGCCGAGGTGCCCTG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CATTTTGTCTTTACCG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TACAACCAGTTACAGC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTTATGGCAATCGGTG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GTTCGCCTGTTCTGGG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CATACTTATATTTGGC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GGCGTACCGTTCAGTC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GTTTGGTTACGTTTAA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTCATAGAGGGC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CAAGATCGCTGCTTGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CCCCGCGAGGTTATGA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CCTAGTTAATTGTCAC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CTATATTAAAAATCCC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ACTGCTCTAGCGGTGT	alt_5424_missing	6	10	10	8	9	5	8	4	4	12
GCTCGCCTGGAAGATG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
AATCTTACGCATAACG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TATGCCGTCTATGAGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
AGCGAGTTATCTGTGG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CTAGCACGACTTAGCT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TGAGCGTAAATATTCG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ACTAGCTATATCAGCT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTATCGTGCAGAGTGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TCCCGTAATTACGGCG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CCCTCCGTGTGTAAAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TCTGAGGCCGTGTATT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTTGGATGATATATTT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GGTCGCCGTGTAGACG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GTCTCTCTGAGAACAA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CATTGCTCAGCTGTTC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GCCATTCGACCTGGTG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CGTGTAGGCGCCATGC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CACCAAGGTCTATCTG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GGTAATCCCAGATGTT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CACTAGCCAAGGCAAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CCCTTGTCGCATTTTA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TGTGTTGCAGTTAATG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
AATTTAACACTAATGT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TGGAGCCGATCGATAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GCCACCGCACCAGTAT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TATCGGGGCGTTCCGA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TGTTGGAATCGCTCTA	alt_5424_missing	9	16	15	13	9	11	20	11	25	9
GCCCCTACGTCGTTGA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GAGTAAAGCGTCTGGA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
GTGTTGCCTACTTAGC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ATCCATCTTATAGGGA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
CTAAGAGCTCGCGGCG	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
AGTGATCCCTGCTTCC	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTAGTATTGGTCTTCT	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
TTGGGCATAGGCTAAA	alt_5424_missing	0	0	0	0	0	0	0	0	0	0
ATCTTCCGTTGTAGCA	alt_6071_new	11	16	12	9	10	15	19	17	21	7
CTAATTTGCCCCGGCA	alt_6071_new	45	76	70	50	51	28	78	30	78	35
TCGGCCTGATCAGGCC	alt_6071_new	23	29	24	20	38	15	29	19	49	16
TCTGCAACGGATCCAC	alt_6071_new	161	163	183	130	146	145	169	149	163	107
ATAAGACATCAACATA	alt_6071_new	56	75	62	68	83	78	81	56	72	56
ATGGACGCTGTGTTTA	alt_6071_new	84	94	114	60	97	79	75	66	96	66
AACTCTGAATTTCTTA	alt_6071_new	39	36	37	27	45	23	39	28	45	29
TGTGCTCGGCAGGCTA	alt_6071_new	21	27	29	28	25	34	24	29	37	20
GCTCTAGAGTACCCCC	alt_6071_new	0	0	0	0	0	0	0	0	0	0
GGTTGTTCCATGAAGC	alt_6071_new	25	21	21	8	22	19	24	21	26	23
GAGTGGCTCGCGCCCT	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TGTGGTCGATTGTAAG	alt_6071_new	14	25	33	36	25	20	13	22	27	25
AACAATAAGATACCGT	alt_6071_new	25	24	17	14	33	19	26	16	29	14
AACTTTACATTTAGTA	alt_6071_new	0	0	0	0	0	0	0	0	0	0
CCGTAATCTACTGATC	alt_6071_new	35	37	41	35	47	22	57	35	46	32
AAAGTTCTTCAGCGTC	alt_6071_new	22	42	33	21	40	26	36	25	32	17
CTGCTTGCTCCGTCCC	alt_6071_new	46	117	56	68	98	62	110	49	135	40
TCGTTTATAGCATTGG	alt_6071_new	0	3	0	0	1	0	0	0	0	0
CATATTCAAAACGTTG	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TGTTACTCCTACCGGT	alt_6071_new	12	12	22	13	14	11	19	12	16	19
ATATCCGGATTTCAGT	alt_6071_new	11	19	20	16	18	13	11	15	24	10
TTTCCAAAAATCTCTC	alt_6071_new	56	46	64	52	57	48	48	34	57	49
GGGGCTCTTTGGGAAT	alt_6071_new	80	95	97	66	90	80	98	76	100	67
CCTGTGTATCTAGTAG	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TTAACCAAACCAATGA	alt_6071_new	0	0	0	0	0	0	0	0	0	0
CTTCGCACTCGCTCAG	alt_6071_new	15	18	15	10	23	11	18	9	14	10
TAATCAGGGACCGCTT	alt_6071_new	7	9	9	14	15	7	11	12	11	9
GTAGAGTTGTCCCAAA	alt_6071_new	49	60	46	36	61	31	34	29	44	29
CGGAATTATAGTATTT	alt_6071_new	360	395	420	383	365	365	439	377	486	341
CAGGGCACGATCGTGC	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TATACGTAGTTTGTGT	alt_6071_new	23	24	23	16	33	24	23	23	27	14
GAGCGCCCTCAGTATA	alt_6071_new	45	56	66	47	58	52	76	46	61	42
ACCATGTTTTTCCTTG	alt_6071_new	38	53	71	53	61	49	60	42	67	54
AGTTCTCATCTGGGGC	alt_6071_new	0	0	0	0	0	0	0	0	0	0
GACCTAGTGTTACGGA	alt_6071_new	45	52	47	54	61	48	61	39	69	50
ATCTGCTTCGGCTCGG	alt_6071_new	14	10	8	12	12	11	10	11	17	7
GAAACCCATGATTAGA	alt_6071_new	106	150	136	128	140	105	153	79	145	106
TACTACACCTATCTCC	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TACTTTTCGAAAAGCG	alt_6071_new	7	9	8	8	9	3	9	5	8	4
TTAAGGTAGTTTTCGT	alt_6071_new	0	0	0	0	0	0	0	0	0	0
GTAAACTTAGTCGCAG	alt_6071_new	2	2	2	8	3	3	3	2	2	4
CGAGTTAGACTAGCAT	alt_6071_new	3	2	5	2	4	2	3	6	6	3
GTGGGTTGTGTGATTG	alt_6071_new	36	98	65	64	89	53	89	54	97	46
CGTCTTAGTGATCTTA	alt_6071_new	32	32	40	34	50	32	42	30	41	35
ATCTAGGACCAGAGAT	alt_6071_new	0	0	0	0	0	0	0	0	0	0
GAGCTCAATCGGCGAC	alt_6071_new	41	38	49	39	50	47	51	55	56	48
GGAGGAACTCTTACGG	alt_6071_new	3	1	0	1	1	3	3	0	1	1
GCCGGGGCGTGCCGTA	alt_6071_new	22	60	45	33	69	32	68	24	48	30
AAGACCACCTAAGTTA	alt_6071_new	6	5	6	14	12	9	9	5	6	4
GTTCCGAACGCGGTTA	alt_6071_new	0	2	1	1	2	0	3	4	5	1
CGGCGCCCACCAAGTT	alt_6071_new	7	14	8	8	7	11	12	7	9	7
CGCCAGTAGAGTCATG	alt_6071_new	96	104	99	75	113	78	97	71	112	73
TAATCACGCTGTTTGA	alt_6071_new	150	123	151	136	125	123	132	116	114	126
ACAGGCATTCAGTAGT	alt_6071_new	21	35	15	15	25	18	27	13	25	12
GCATAACCTGCTGGAC	alt_6071_new	165	186	175	131	182	173	211	132	214	156
TATTTACTCCTGTTCG	alt_6071_new	16	21	37	19	35	16	36	27	26	13
AATCCTTATGCTCCGA	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TATTTCAAGCACCGCG	alt_6071_new	20	27	18	26	28	16	24	12	19	23
TCGGTTCCTGGTGGTT	alt_6071_new	41	51	49	42	39	40	51	34	35	27
AGGTCCCTTTGGAAGG	alt_6071_new	12	3	9	5	10	3	5	4	3	6
TCTTCTAAATCTAGAA	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TGAGCCGTCAAGTATT	ref_6071_new	10	26	21	16	25	20	33	20	31	16
GCAAGATCATTAAAAA	ref_6071_new	103	136	110	95	97	110	112	104	114	91
GTGAGACCTTATGTGA	alt_6071_new	0	0	0	0	0	0	0	0	0	0
AAACTCCGGTGTTGTT	alt_6071_new	19	26	32	20	15	19	28	21	32	17
ATCATGGAGCAATACC	alt_6071_new	72	78	66	58	66	61	74	60	61	64
GATGTACTTGCGTCAT	alt_6071_new	0	0	0	0	0	0	0	0	0	0
TTGCGACGGTCCTCTG	alt_6071_new	36	61	39	44	49	47	47	35	48	37
AACTGTCGTGGTCATG	alt_6071_new	129	149	143	124	151	129	156	142	161	129
GCTATCGCGGTGAACG	alt_6071_new	0	0	0	0	0	0	0	0	0	0
ACCCTCACTCTAGGCC	alt_6071_new	77	99	76	77	77	71	87	60	107	56
AGAGAGTCTAGGATCT	alt_6071_new	30	33	23	20	26	26	29	25	29	18
CATCACCGGGTTAGGA	alt_6071_new	20	34	20	20	23	12	28	18	20	24
TTCCCGCGTTTCGTCG	alt_6071_new	342	397	404	369	427	310	417	323	399	290
TGCCTGTAAATGCGCC	alt_6071_new	3	2	5	9	4	0	8	4	5	5
CCTCGAATACACGCGG	alt_6071_new	16	31	21	38	31	15	18	15	20	23
TTCATACTCCGTCTGC	alt_6071_new	28	60	35	31	56	21	63	33	71	27
TTACAACCGCCTCTCC	alt_6071_new	67	91	66	56	60	55	85	55	78	64
TTATTGTTTATAGAAA	alt_6071_new	9	19	13	7	13	15	14	8	19	4
CCTTTTAAGTCCAACC	alt_6071_new	141	154	188	154	200	146	178	138	196	126
GTGAAGCTTGTAATAG	ref_5403_RC	670	60	677	618	55	559	46	538	58	512
ATCACCCTCTTTCTGC	ref_5403_RC	393	37	418	365	48	296	55	294	39	290
TGACGGGTACTCTTCG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTTCGTGCTGCC	ref_5403_RC	813	65	1036	876	83	783	65	789	95	696
CTGTCCTATACGCAAG	ref_5403_RC	377	31	445	403	23	374	32	380	28	305
TTTATATTTTCCCTGA	ref_5403_RC	302	24	339	359	22	315	31	299	38	238
TCTTTAACTAAATTTA	ref_5403_RC	738	64	866	720	75	683	54	672	70	580
ATGATCACTTATACGT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GATACCCGGCCAGCAT	ref_5403_RC	148	18	220	185	20	156	26	137	17	128
TCCGGGTATAGATAAT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AGGCCATCGCGAGCTT	ref_5403_RC	356	28	429	372	32	307	36	311	28	327
TCACGGGCAATATATA	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TCTCCAGAGTCACCCT	ref_5403_RC	174	26	217	169	11	154	9	170	11	133
GTCTGCGTACGTTTAC	ref_5403_RC	1185	132	1453	1219	140	1133	147	1140	145	1096
CATCATTTGTGGTCCG	ref_5403_RC	1117	97	1546	1270	121	1188	125	1248	117	1059
TAATACACTATGGAAT	ref_5403_RC	3170	283	3984	3267	282	3119	310	3098	314	2828
GCGCGCACGGGCAGTT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CTTCCGTACTCATGTT	ref_5403_RC	117	9	165	149	19	170	10	114	15	112
GTAGTTTAGTTGTACC	ref_5403_RC	6	0	9	5	0	7	1	12	0	3
GGTGCCGACCCCCAAT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TTGTTCTGGCTTATTC	ref_5403_RC	253	18	309	239	27	258	28	248	33	219
GTCTTCTTCCATAAGC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TTACTTTTTGAAGGCC	ref_5403_RC	115	12	113	135	11	133	20	113	5	118
TCTAGCGCTCATGACG	ref_5403_RC	93	8	125	103	8	83	15	89	13	92
ACCGGCTTTCTTCGTA	ref_5403_RC	18	5	22	22	3	6	0	8	1	10
TACTTTCGATGGTGGT	ref_5403_RC	224	23	324	270	17	257	15	282	31	230
CATTTGTGCACATCTC	ref_5403_RC	157	27	185	156	43	135	40	166	48	129
CATGGCACTCTTCACC	ref_5403_RC	113	6	140	120	12	99	14	97	11	97
ATTGTCTCCGAGTTTC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GGTTGGCTGTAGCCGG	ref_5403_RC	732	76	905	775	65	701	63	738	72	629
GGGACGTACAGTATTA	ref_5403_RC	156	21	231	180	23	185	23	180	19	128
GCATCTTGCGTAAAAT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GCCTAATGCCGCTAAT	ref_5403_RC	124	8	178	142	12	102	10	143	21	118
TGGGCTTTTCGAATCA	ref_5403_RC	104	7	133	102	7	112	11	114	12	97
CTGGGCGTGACTGGAA	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TACTGACGCCTCCTTA	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTTCGCGCAGGC	ref_5403_RC	26	19	44	33	25	28	17	27	24	36
CAAACTCAGTCTTTTC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CTTGGCAGTTGTGCCG	ref_5403_RC	52	14	62	60	15	58	14	35	8	28
CATGATCCCTATAACC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CATTTGTTGCCACTTC	ref_5403_RC	757	70	862	741	89	674	70	634	83	654
CCTCACAATACAAGGC	ref_5403_RC	213	16	291	231	17	224	19	215	18	212
TCTTGTAAGGCTAGAG	ref_5403_RC	10	2	5	6	1	5	0	5	2	16
CATAGCATCATGCCCC	ref_5403_RC	526	57	656	627	52	577	60	570	52	504
CCTTCGTGTGTAAACG	ref_5403_RC	183	39	254	270	40	208	39	267	30	175
TCGGGCAATGGGTCGT	ref_5403_RC	554	43	693	602	53	587	46	494	47	531
GTTTCCTAAGATAGAG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AGGCCGATAGTGGATT	ref_5403_RC	86	7	106	81	8	77	15	78	10	86
ATGCGTATTGCACAAT	ref_5403_RC	81	5	123	109	8	100	12	89	14	75
ATGCGGGGTCACAATT	ref_5403_RC	206	16	230	210	19	169	15	180	16	168
TTCAAGCACGACAATG	ref_5403_RC	401	39	550	497	82	480	68	502	49	369
GATGATATTTTCGTCG	ref_5403_RC	300	32	420	367	34	328	46	265	23	300
TACTACGTGAGTTGAT	ref_5403_RC	441	33	507	454	34	410	37	378	40	349
TATAGTTCCTGGCTGG	ref_5403_RC	652	71	786	653	57	630	65	608	72	532
TGAAGCTAAAGGTTGA	ref_5403_RC	295	27	361	355	19	296	28	295	30	283
TTGTACAGACAATACG	ref_5403_RC	13	1	18	11	1	14	0	15	1	17
TTGGGCCTCCTCCATC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GGTAACAGTGTCTCAA	ref_5403_RC	1983	214	2375	2251	169	2010	191	1988	201	1836
TTATCGGATCCGATTA	ref_5403_RC	218	23	286	223	17	223	17	199	25	180
TCGGTAAAAGCTTACC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
ATTGTATTGGCATGGG	ref_5403_RC	200	19	264	210	21	193	19	197	14	186
TTACCTAACTCGTTCT	ref_5403_RC	1942	148	2388	2067	162	1902	171	1844	183	1767
GGTTGTTTTTCGGGTG	ref_5403_RC	661	73	880	719	45	647	69	684	71	604
TTATCGCCGACTTGTC	ref_5403_RC	1257	100	1503	1294	102	1155	107	1146	110	1080
TACTACCGCTTGTATT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GGGTTACCTCCTTCGC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TGAAGGTGTCTTATTA	ref_5403_RC	190	27	240	210	16	173	26	197	25	175
CTCGGGATGTTGACAC	ref_5403_RC	313	20	335	279	20	287	28	249	19	223
TCATTTTTAACAGATA	ref_5403_RC	2840	235	3389	3004	242	2481	236	2615	258	2405
CTAGCCTAGTCCTTCT	ref_5403_RC	334	43	432	380	45	291	42	327	44	283
ATTGATCTACACTTTT	ref_5403_RC	388	31	521	326	35	352	56	368	46	362
GCACGATTTATCAACG	ref_5403_RC	156	11	216	171	13	165	16	144	19	139
TGTGCGTACCGAATCC	ref_5403_RC	175	18	241	193	17	180	24	185	16	149
TGACTTTTTAGTTATA	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TGGGCGCATGCATTTT	ref_5403_RC	222	15	285	248	21	220	17	243	15	213
GGAGTGATCTTCGATT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TATAATTGGAATAATA	ref_5403_RC	76	9	56	65	7	66	11	66	5	51
GAATTTGGGTTCCCTG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CATCAACGTATGCTCA	ref_5403_RC	1267	108	1369	1230	98	1130	94	1120	110	1063
TTATTAGAAGGTCGCT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
ACGGGAGGTCCGTATA	ref_5403_RC	153	8	179	130	9	130	10	139	11	124
GGCTTCCGGCCCTGTA	ref_5403_RC	248	24	292	246	27	255	22	244	25	232
CACATGCATAGATCAT	ref_5403_RC	62	8	71	58	6	62	3	51	1	56
ATGCAGTTTTCACGTA	ref_5403_RC	263	33	312	256	31	239	27	240	36	201
GAACTGAGCTACGAGG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CGGGATCGACACTAAT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AAGCAGTAAGTTAGCC	ref_5403_RC	60	8	57	62	7	46	11	65	17	51
GTGTGTGCTTGAGCCG	ref_5403_RC	193	13	267	218	21	203	22	214	21	182
TCATCGTACCAGACGC	ref_5403_RC	895	56	1124	960	90	769	82	876	82	757
GCATTGTAGCTGGTTA	ref_5403_RC	2002	180	2602	2233	172	2043	169	2071	182	1834
CTTGCAAAGTCGATTG	ref_5403_RC	212	17	292	215	25	234	13	178	28	195
GCTTTCCAGTCCCGCT	ref_5403_RC	3085	248	3596	3143	280	2814	256	2868	269	2621
CCAGAGTTTACCTTCG	ref_5403_RC	160	18	205	170	9	191	20	162	22	165
GCAATTGGATTTCAAC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TCAGTACTCATAACGC	ref_5403_RC	182	19	195	152	9	128	10	171	25	137
CTTTGTTTCGAAGGCC	ref_5403_RC	420	34	499	391	33	362	31	373	38	321
TATTACAGTCCTCGGG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CGCTATTCCTTAATGA	ref_5403_RC	908	75	1061	903	83	869	83	764	86	769
TTTTTGGGGAACTGCC	ref_5403_RC	116	14	142	121	8	131	8	134	13	109
TTAAAGGTATGAGGGT	ref_5403_RC	628	36	685	624	42	507	36	526	43	528
TCGTGTAGAGATGGTA	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AATGTGTCCTTCTCTA	ref_5403_RC	154	12	175	127	17	146	16	124	12	109
GCAACGGTTGTATTAT	ref_5403_RC	766	60	902	838	66	689	80	680	80	633
CCGAGTCGCGCTGCCC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AAGTTTCTGCATTCCC	ref_5403_RC	91	7	133	146	10	113	7	106	10	110
AGAGTCTGTTGAGGTT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CTCGGATTGGGTAAGA	ref_5403_RC	692	69	924	783	69	738	90	752	79	639
GAGCGTGAAAATCTAG	ref_5403_RC	1594	119	1950	1647	151	1462	144	1525	142	1381
TGCTACGGTGCATAGC	ref_5403_RC	384	37	493	416	45	413	39	381	40	400
TTCACTCCATTATCTG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GGTTACGTGCAAAAAC	ref_5403_RC	320	30	399	356	41	302	32	330	30	286
TTTATACTATAAGGTC	ref_5403_RC	314	28	451	385	34	323	33	386	45	334
TCTCATTCTTCGAATC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TCTATAAGCCGCCTTA	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TTCACTGGTTCGAGTA	ref_5403_RC	400	47	427	312	27	302	39	225	48	260
TAATATTTGTTGAGAT	ref_5403_RC	561	54	765	623	51	544	63	462	61	531
GTATTACATTTTTGAA	ref_5403_RC	589	58	768	596	53	556	55	585	66	536
GAAGATCGCAGGCAGC	ref_5403_RC	553	54	678	574	58	575	51	515	44	518
TAGTGGAATTCGCGCT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AGTCTGACCCTGGTTC	ref_5403_RC	428	40	534	460	44	425	58	435	35	354
CGACTGGACTACTTGC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GTAAATGATTTCGGTT	ref_5403_RC	174	16	183	153	17	147	18	145	16	135
TCAATATCTGTCGTGT	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AAGCGCATACTTGTCG	ref_5403_RC	71	11	96	96	9	68	10	81	6	74
TTACTAGGGCTGAAGA	ref_5403_RC	380	35	460	358	35	305	28	315	40	327
CCCTCGGCGGCGTCTG	ref_5403_RC	1780	148	2179	1952	157	1703	164	1793	152	1591
ACAACTCCCTTGTTGG	ref_5403_RC	16	19	15	16	25	16	25	18	21	9
CTTGACAAGTCTGTGC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TCTAGTACACTCCGCT	ref_5403_RC	3	4	0	2	1	1	2	1	6	0
TCCGTCGAACACATCG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GATATGTTGTTTGCGT	ref_5403_RC	119	7	142	111	7	89	10	113	14	87
GCCGTGTTGGCGCGGT	ref_5403_RC	142	18	128	119	13	118	14	114	9	118
TACGTCATCTGCACTC	ref_5403_RC	1569	154	2036	1867	180	1727	175	1680	160	1477
CATAATATGCTAGGTG	ref_5403_RC	40	5	71	45	2	52	9	45	0	46
GGGTGCTTGGGATCGG	ref_5403_RC	1685	165	2158	1784	184	1684	157	1659	151	1476
GTGTTCAGCTTGTGTG	ref_5403_RC	78	6	102	91	9	87	9	76	3	84
CTCTTTGATTACTTCG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
CTGCACACCGCAGATC	ref_5403_RC	580	38	649	598	48	444	39	473	56	456
GCCCGTGGTTACAGCT	ref_5403_RC	104	6	120	114	8	117	8	106	13	80
CCTGTGGAAGCCTTTG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
GGGTGTTAAGCACCGT	ref_5403_RC	245	17	286	245	24	261	23	279	21	194
GGACGAGCCTTCTGGT	ref_5403_RC	3653	323	4422	3993	331	3528	335	3653	303	3291
TGACATGTTTATAAGC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
TATTTGTATTATGCTG	ref_5403_RC	490	40	551	495	28	421	31	439	36	363
CGCCACCCCATGAATA	ref_5403_RC	227	21	291	298	40	203	41	273	38	198
ATAAGTGATCTCGTCA	ref_5403_RC	3700	373	4597	3934	333	3635	352	3595	401	3339
TATACCCGGTAACGTA	ref_5403_RC	193	19	302	218	31	235	23	208	29	216
TCTCGTGCTCCTGGAC	ref_5403_RC	1151	121	1324	1238	119	1047	100	1054	82	980
GTTTTCGTTAAACCTG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AGTGTTATTTTTCAGA	ref_5403_RC	149	12	183	154	10	142	16	143	8	144
ATAGAAACCCATTATC	ref_5403_RC	1279	107	1541	1410	121	1325	120	1346	100	1157
GTGAGTTACGGCATCC	ref_5403_RC	0	0	1	0	0	0	0	0	0	0
TGTATATCTGTATACC	ref_5403_RC	443	42	454	441	45	360	54	404	52	318
CTTCGCTTCTCCCGGT	ref_5403_RC	393	55	658	587	64	444	61	541	50	393
TAGAGCTCACACCACT	ref_5403_RC	68	10	107	79	10	94	11	72	5	72
TTTACTCAATCCTTGG	ref_5403_RC	2874	252	3489	2940	262	2745	281	2678	269	2455
TATGAGGATTATAAAT	ref_5403_RC	669	40	836	680	43	695	59	665	52	540
ACAGTTTTGCACCCCA	ref_5403_RC	1062	86	1356	1175	110	1002	90	1035	105	1021
AGTCTGCCCCTGGTTC	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
AACTCCCACTCATACG	ref_5403_RC	0	0	0	0	0	0	0	0	0	0
ACCGGCATTGGGGGTA	alt_5919_new	17	32	41	20	35	20	37	15	26	20
GCCCGTAAGCTCGTGC	alt_5919_new	23	19	30	23	37	25	35	28	43	25
TGCTCTCTGTACGGGC	alt_5919_new	27	37	35	33	32	27	39	20	30	26
TCCTGCTCCTTTATTA	alt_5919_new	17	32	26	11	31	16	19	20	24	19
GCCTCGAGCCCCCTCT	alt_5919_new	33	37	38	29	35	46	40	19	22	37
ACAACCGGTTGACTTC	alt_5919_new	7	27	10	11	25	9	31	12	23	8
CTACTATAGACGCCTA	alt_5919_new	7	8	4	4	5	9	11	3	6	6
TGACCTTGCTTTTAGT	alt_5919_new	35	46	31	26	57	32	59	33	70	25
TATTAGGTGGCCCCTC	alt_5919_new	269	379	349	272	312	260	390	227	395	240
CCTCGCCACCCCGTTC	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TCCGATCAATGAAATG	alt_5919_new	46	67	52	43	72	33	72	36	71	61
CACACGAGATGATTAG	alt_5919_new	153	165	151	148	168	125	173	105	181	109
TCCGCCCGATTGATCT	alt_5919_new	16	21	17	16	21	13	8	16	21	14
GTATCGGCTTGGTGTC	alt_5919_new	17	32	29	22	50	27	41	19	26	16
CTGATGTACAGCTCCG	alt_5919_new	17	24	17	14	49	13	45	6	34	13
TGCCTCTTATTTATAG	alt_5919_new	0	0	0	0	0	0	0	0	0	0
CTCGGAACCTTCATAG	alt_5919_new	19	41	28	23	37	21	43	29	41	35
AAAACCTTTAGCGGGC	alt_5919_new	128	165	148	120	144	124	170	116	167	104
GAACTCTGTCCCCCGT	alt_5919_new	0	3	1	3	4	1	7	1	4	0
GCATCCTGCTTATGAA	alt_5919_new	6	5	6	2	7	14	8	14	9	7
GGTTGACACAGTATAA	alt_5919_new	6	18	12	21	14	10	7	15	10	11
TTTTTCCTCCTATACG	alt_5919_new	9	21	19	25	16	9	28	17	23	12
TTGGCGGTTGGTGTGC	alt_5919_new	19	91	21	32	83	19	65	28	66	20
CTGCGTCCGGTTCCGT	alt_5919_new	113	142	135	97	154	108	150	98	151	87
CGAGGCTGTTCCCGAG	alt_5919_new	0	0	0	0	0	0	0	0	0	0
AGTAGCCCTACCTCTG	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TGCCAGAGTGATTAAT	alt_5919_new	17	43	36	31	43	36	34	26	30	24
TATTCACCAGGGCATG	alt_5919_new	5	22	13	5	17	11	8	10	25	5
TTTTTTTAATTAATTT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
AATTCGGCCCTAGCTG	ref_5919_new	23	31	27	23	29	27	37	28	28	15
ACAGTACATAGTCCTG	alt_5919_new	43	63	46	36	79	29	71	40	57	45
TTCTGCCCATTGACCA	ref_5919_new	77	68	63	73	105	57	115	45	125	64
TGTTGAGCATGTGTTT	alt_5919_new	21	27	22	15	24	12	19	25	23	9
TGGGCTAGACTCCGTT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TTCGCTGCTGTAGTAT	alt_5919_new	11	10	12	15	13	3	14	7	9	19
GGTTTCACACTATCAG	alt_5919_new	0	0	0	0	0	0	0	0	0	0
GGTTTCTGAAATCTGT	ref_5919_new	28	58	48	46	35	37	41	36	58	42
CCCTTTGACATTTCAA	alt_5919_new	23	29	31	32	34	25	41	20	43	24
CGTCGCTCCCTGACTC	alt_5919_new	0	0	0	0	0	0	0	0	0	0
ATCATTGAGGCGCCTG	alt_5919_new	3	11	5	5	4	5	8	4	5	4
GACCCTAATAGGTCAA	alt_5919_new	90	127	119	85	125	85	133	55	124	70
CTCCAACGTGCAGCGC	alt_5919_new	19	22	20	24	24	20	20	18	35	10
ATTGTCACACTATTGG	alt_5919_new	18	28	15	19	24	20	33	21	23	16
ATTGACCTTCAAACGG	alt_5919_new	64	88	71	62	89	61	91	48	87	54
ATGGGCTACACAATCG	alt_5919_new	44	87	56	58	83	42	70	45	81	36
GGGTTTGAGCCCAATC	alt_5919_new	82	120	91	82	119	77	148	75	107	67
CTCGTGAGACCGGCTT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
CGATTCCTGCACAGCC	alt_5919_new	32	43	39	34	45	23	51	27	56	34
CAGTCGCAGTTGGGTG	alt_5919_new	12	56	14	16	42	13	54	21	46	13
CTAATCGATACCCCCC	alt_5919_new	19	14	15	16	11	16	25	10	25	9
GCTTCGTGTGTAAGAA	alt_5919_new	12	10	16	6	14	1	7	7	17	12
TTAGCTGGTCGGTTCA	alt_5919_new	8	3	6	6	4	1	4	3	7	3
AGGCTCGGCTTGAATG	alt_5919_new	38	50	46	34	48	35	44	37	32	24
GAGCTGACTTTTTATT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TGGGGTTGGGAACGAC	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TCATGACTCGGAGCAC	alt_5919_new	7	15	13	10	10	11	15	6	12	5
CAGCAATAATTATATT	alt_5919_new	2	1	0	1	1	0	5	3	0	3
CGCTATTTCTTTCTTT	alt_5919_new	6	8	8	17	9	5	5	8	15	9
GTTGGCACAAGGGCCT	alt_5919_new	18	14	9	9	15	8	17	14	22	5
CGCCGCATGGAACTCT	alt_5919_new	0	0	6	0	2	1	2	2	2	1
GTAAGCCTGCTCAACC	alt_5919_new	0	0	0	0	0	0	0	0	0	0
CTTAACCTTTAAGCTA	alt_5919_new	0	0	0	0	0	0	0	0	0	0
ACCGGCCCAGATACGG	alt_5919_new	4	18	3	7	18	3	24	1	14	7
AGAACCCAGACGATCT	alt_5919_new	13	9	6	9	16	6	12	4	12	5
CGTGTCAATTAACGCC	alt_5919_new	46	56	45	27	68	31	68	35	71	34
GGTGTTGGCTCTGGAC	alt_5919_new	32	53	39	37	42	16	47	27	56	29
CGAGACGAGCTCGTCC	alt_5919_new	0	0	0	0	0	0	0	0	0	0
CGCCTTCTTCGCTCTA	alt_5919_new	1	9	12	2	5	5	5	6	12	2
TAACCTTCTTCCTTCT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TCATAAATGGGTGGTC	alt_5919_new	169	230	227	172	216	175	258	176	269	153
TCATTAACGATGTTTC	alt_5919_new	0	0	0	0	0	0	0	0	0	0
CCGCTGGGTTGTGGTT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TAAGCCTTCCAAACTG	alt_5919_new	119	152	107	110	151	110	147	101	157	116
GCACTCCTCCCTCTAG	alt_5919_new	0	0	0	0	0	0	0	0	0	0
GGATTTTGGATTATGC	alt_5919_new	55	67	54	61	90	47	80	48	73	39
TCAGTGTATTAGCTAT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TACGCCATGGTTTCTG	alt_5919_new	19	37	30	29	24	21	25	30	28	25
ATGCGCCTTGCCATGA	alt_5919_new	17	13	9	7	12	8	24	7	17	13
TTTCCCATTATTCGCG	alt_5919_new	0	0	0	0	0	0	0	2	0	0
TTCACATCTGTAAAAC	alt_5919_new	0	0	0	0	0	0	0	0	0	0
GCCACAGACAGAATTC	alt_5919_new	11	12	10	2	10	6	6	6	15	6
TACCCCTATTGGTTTT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
AACGATGTAAACTAGA	alt_5919_new	59	48	55	52	46	38	65	38	51	46
GAATTAAGGTAAACCA	alt_5919_new	26	38	31	26	33	29	30	27	48	21
GGGGGGACTGTATAGT	alt_5919_new	72	98	94	74	95	69	105	52	112	72
GTTGTTTTACTGGCTT	alt_5919_new	2	5	2	6	1	3	2	7	5	9
CTTGTTACATTTTGAG	alt_5919_new	5	9	5	2	8	2	8	1	3	2
GCTCCGCCGAATGTTG	alt_5919_new	7	15	9	6	10	8	18	7	20	5
CGGCTTTTCAGCAGGT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
GTTTTATGTCTTTCGG	alt_5919_new	52	44	60	43	49	40	62	41	59	42
GCAGTCTCTGATGATG	alt_5919_new	19	21	24	25	23	25	35	20	34	22
TCAGTTTTGTCGAGAT	alt_5919_new	4	8	5	5	5	3	8	5	5	3
ACACGAAAAACCTCCA	alt_5919_new	117	113	126	83	118	98	127	113	133	76
AGCTGCTTTCGTTTAG	alt_5919_new	0	0	0	0	0	0	0	0	0	0
TTGCCGTCCGTTTCTT	alt_5919_new	0	0	0	0	0	0	0	0	0	0
GATCACAACGCAATGG	alt_5919_new	6	5	7	11	2	7	9	5	10	2
TTCAGATCTCGGCTTG	alt_5919_new	13	15	9	18	25	16	21	14	24	14
GCTGTTTTGTTTAGCA	alt_5919_new	17	25	11	17	35	17	32	11	23	14
AGGCTCAATTAAACAG	alt_5919_new	125	151	138	115	193	114	201	108	212	109
CTCAACTTGTTATCGC	alt_5724_new	4	17	7	10	2	4	12	7	7	6
AACCTGCCGCATAAAC	alt_5724_new	1	2	2	0	1	1	1	0	1	0
CGTATCATCTAATTAT	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CTCAGAGTATCTAATA	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CGGGTAACGGTTTAAT	alt_5724_new	0	0	0	0	0	0	0	0	0	0
AAGGGTGTTCGCCAAT	alt_5724_new	107	151	127	112	131	106	105	109	132	96
CCCGGACCTATCCTTT	alt_5724_new	13	10	6	3	10	9	19	9	9	3
GTTTCCGGGTGTTACT	ref_5724_new	45	76	65	59	73	63	68	58	83	42
AGATACTATGACTGGT	alt_5724_new	10	31	19	15	15	12	17	17	15	6
CAAAATGCTTGGTCCA	alt_5724_new	41	42	43	38	44	28	30	31	31	28
CTCCAGTTTTAGGCTC	alt_5724_new	18	42	29	40	30	28	32	29	35	18
TACATACTATGTTATC	alt_5724_new	0	0	0	0	0	0	0	0	0	0
TTTCCATCCTTTTGAA	alt_5724_new	11	28	29	17	35	15	25	17	18	11
ACTCTTACTCATACAT	alt_5724_new	0	0	3	1	1	1	6	1	4	1
CAGCATATGCGGTGAG	alt_5724_new	62	64	77	68	71	69	67	48	69	47
GCCCATCGTGTATATA	alt_5724_new	16	12	17	13	18	13	9	14	14	13
ATGCACTCTCATGGGG	alt_5724_new	397	448	477	387	444	372	380	365	449	338
TACGCTGCCGGGCCAC	alt_5724_new	15	19	29	29	16	10	20	24	27	9
TACGGGTATTCCGGCT	alt_5724_new	3	3	4	0	3	1	0	2	3	0
TTCGCCCACCTGTAGG	alt_5724_new	12	18	14	13	12	12	14	15	12	9
GGAAGCTCGGATCCGT	alt_5724_new	6	13	11	4	3	10	16	7	8	8
TCTCGCTTGGCGGGTA	alt_5724_new	16	9	6	14	12	11	11	12	25	12
TTAGGGGTACCGCGGG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CCTGAGACAAGATTTT	alt_5724_new	71	107	105	92	88	84	96	80	95	86
TACTTCATCGGTGAGC	alt_5724_new	9	7	11	4	17	9	9	8	15	11
GCTACGACATCCGAGA	alt_5724_new	25	44	23	32	26	26	23	20	26	23
TATGCGGTTGGGCTAA	alt_5724_new	24	40	36	36	29	28	29	18	36	24
TACCATTCATTCGCTT	alt_5724_new	11	14	6	12	16	6	11	13	10	12
ATCCTGGTCGGCCCCT	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CTCGCTATTGCGATAC	alt_5724_new	0	0	0	0	0	0	0	0	0	0
TTCTATATTTCCCGTC	alt_5724_new	0	0	0	0	0	0	0	0	0	0
ACAAGCTTGCTGACTG	alt_5724_new	34	50	29	43	49	30	45	32	48	24
CGCACTCTTGGTGCTT	ref_5724_new	14	17	24	11	19	15	25	14	22	18
GAAGTTGGAACATGAC	alt_5724_new	49	72	49	49	59	33	73	38	58	45
TTATTCATCTTCACGT	alt_5724_new	17	32	29	29	23	28	31	20	21	17
CGCCATGTCTTGGAAT	alt_5724_new	15	20	13	25	17	14	28	16	19	14
TGCCGCGCGCAGTAAC	alt_5724_new	9	13	19	8	24	10	14	9	17	14
TTCGATCATTCAACTG	alt_5724_new	28	30	35	17	17	22	22	13	27	13
AACAAAATCGAGGGCC	alt_5724_new	83	79	87	71	99	80	91	72	95	65
CGTTACGTTTAGACTA	alt_5724_new	5	13	8	10	12	6	11	7	14	3
TATGGCCCAGTAAAAT	alt_5724_new	6	3	8	8	8	7	2	10	8	7
AACCTGCGACTGATCG	alt_5724_new	71	112	79	88	90	67	102	75	108	63
GCCCACGCCATGAAAC	alt_5724_new	0	0	0	0	0	0	0	0	0	0
GTACCGCACCTTCGAG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CGCCCGCATTATGCTG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
TATAGTATAGCTCCAT	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CAGCGTGTACTTGTTC	alt_5724_new	58	89	82	77	93	70	71	60	71	57
TTGTTTTATCAGCAAG	alt_5724_new	11	10	8	11	13	5	20	16	12	8
CATTGTGCTATAGGGC	alt_5724_new	41	61	63	52	61	50	56	41	47	45
TCGTTGTGTCGTACAA	alt_5724_new	122	173	167	124	131	118	142	125	151	101
TCTCGCCGCATAGTCT	alt_5724_new	26	40	33	26	39	22	57	31	68	20
AGAATTAGCAACTGGA	alt_5724_new	26	26	26	24	31	21	46	29	26	22
AAACCTGCTATTGGAG	alt_5724_new	23	19	34	24	28	33	36	15	33	15
TTTTGTATCTGGCGCC	alt_5724_new	34	29	31	31	18	28	24	24	25	24
TCGCCCCATATGATTT	alt_5724_new	46	59	68	78	78	47	70	58	73	45
CACTGAGCCGTATCAC	alt_5724_new	41	59	48	45	35	44	50	32	44	33
TCTGTGCGCTTACATT	alt_5724_new	19	26	20	24	29	14	23	29	29	17
GGCCAGCAACATAACA	alt_5724_new	13	12	22	22	26	10	28	22	21	21
TGATTGATATATACGT	alt_5724_new	197	290	239	218	256	196	306	190	319	202
TGCTCTGCCTGACCCG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
ATTAGTTCCTGCCCAG	alt_5724_new	12	25	14	14	25	17	15	8	23	14
GTTACTCGATATTTCG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CCCGACCCTTTCTATG	alt_5724_new	54	96	72	62	81	66	104	47	104	45
ATAGATCGTATTTTGG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
GATCCGAATACAGCTC	alt_5724_new	32	37	45	26	40	34	37	36	50	40
GGATGGTGCTTTGACT	alt_5724_new	9	10	15	6	11	8	14	2	24	4
ACCTGGAAGAAACACC	alt_5724_new	14	24	19	15	26	17	28	11	25	14
GGAAACACAGTGAGCT	alt_5724_new	64	58	61	73	60	54	61	50	75	52
TGAAGTTATCTCTTAA	alt_5724_new	71	85	88	73	90	68	92	60	71	67
CTAACGTTTTGGGGCC	alt_5724_new	192	239	247	214	238	174	237	186	278	193
GCTCAAGCGCACATGC	alt_5724_new	28	41	39	37	34	38	37	26	53	23
CTCTCATACGCATGGC	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CTTGTATGTTGCTTTC	alt_5724_new	3	3	0	7	1	4	5	1	4	2
CGACGACCCAGACATA	alt_5724_new	0	0	0	0	0	0	0	0	0	0
AAATAATTGTCTTGAG	alt_5724_new	7	17	8	7	8	7	18	9	12	10
GTATTGCGGCAGCTAA	alt_5724_new	51	64	64	62	64	45	64	52	80	40
GACGTTATCAGGGCGT	alt_5724_new	58	82	93	73	72	66	90	73	96	48
CTGAAATTGCCTTAGC	alt_5724_new	6	6	9	7	17	7	7	7	8	10
GTGATCCACAAGGAGT	alt_5724_new	51	55	60	55	47	49	43	46	55	48
CGTGTTTTTTGTGGAA	alt_5724_new	83	109	104	78	88	83	96	82	96	63
GGGGTTTAGCCATGTT	ref_5724_new	63	59	69	78	66	77	67	79	85	60
CTCCAGTTTTAGGGTC	alt_5724_new	0	0	0	0	0	0	0	0	0	0
GAGCCGCCCCCTAGCT	alt_5724_new	0	0	0	0	0	0	0	0	0	0
ACCATTATTATCATTT	alt_5724_new	14	16	19	14	13	11	16	10	16	12
GCTCATGCCAGGCGAG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
TATGGAATAGTACAGA	alt_5724_new	37	44	53	28	38	38	35	45	54	36
CCCCGGACCCTTTGAA	alt_5724_new	4	12	5	1	3	3	4	2	12	3
GCGGTAATTGTTTATT	alt_5724_new	33	35	43	50	46	19	52	38	42	27
ATAACGTAGGCTGTAA	alt_5724_new	20	18	23	18	20	16	33	18	33	19
ATCGTTCATGCGGGAT	alt_5724_new	15	23	25	20	15	16	21	18	17	11
CTTTAGGGTCCTCGCA	alt_5724_new	25	18	28	31	32	22	20	35	32	27
GTTTGATGTTTACCGG	alt_5724_new	23	46	44	32	51	36	53	19	31	28
GCTTATCAATCGGTGA	alt_5724_new	61	66	65	79	65	66	94	50	68	51
ATAGATCGTATGGTGG	alt_5724_new	17	11	15	16	16	13	12	8	12	15
GTTTCATACGTTCCTG	alt_5724_new	62	78	76	53	90	43	75	65	86	57
TCTTTTCCAGCCCATT	alt_5724_new	37	55	45	32	55	26	64	38	59	39
CCCCTAAGTTCCTGCG	alt_5724_new	2	5	3	0	7	0	4	1	7	2
GGGGGGACCGGGTATC	ref_5724_new	29	26	42	26	23	15	25	19	30	18
GGTTGATACCTCAAAG	alt_5724_new	0	0	0	0	0	0	0	0	0	0
CATGTCGCATCCTATG	alt_5724_new	9	7	12	6	11	7	12	8	8	5
AATTTCCGTGGGCTTG	alt_5780_new	120	165	146	144	159	118	173	122	178	105
CGGCTTCGTCCGGAAG	alt_5780_new	5	9	9	7	7	5	6	14	1	4
TCCATCCCGGTGCTGT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
GCTAGTATTATCACCG	alt_5780_new	13	20	14	13	18	11	15	11	21	9
AACATGAATTCGGTGC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TGATACAACTACCTAC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
ACGGCCGCAGTCGTCT	alt_5780_new	6	4	4	0	6	4	7	10	4	1
CGTACGTCATGAGCGA	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TCGCTGCCAATACGGC	alt_5780_new	5	11	17	14	9	8	13	5	13	9
AGTATAAGGCTTGATT	alt_5780_new	26	44	35	17	35	16	34	16	44	22
TGCACATTAAATCGTA	alt_5780_new	7	18	15	9	16	10	17	10	14	10
GCTCACACATTCACGG	alt_5780_new	43	72	64	53	71	54	76	36	62	47
GTTCTTGGATCAATCA	alt_5780_new	27	19	18	11	21	11	27	14	29	12
CTAGGTTGCTTAGTGT	alt_5780_new	34	56	40	42	64	40	65	41	54	30
CCTCTGGGCTTTTATT	alt_5780_new	1	1	2	0	2	1	0	0	0	1
TTGTTGTTGTAGACTT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
GCTGGCGAGTGCTCCA	alt_5780_new	8	5	2	1	5	3	6	3	3	2
TTCATCCTCGCCGTGG	alt_5780_new	67	161	93	98	192	83	158	94	207	74
ATTTTTCTCAACCCAG	alt_5780_new	16	25	18	17	24	10	28	12	36	18
ACGTATGTGATAGGGT	alt_5780_new	16	13	21	17	25	7	20	8	27	18
ATTATTTGTAGGTACC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
GGTTCTTGGCGTATTC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
GTTGTTTCTCCGGGTT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
GACCGCCATTCCAAAC	alt_5780_new	9	13	13	7	9	12	15	6	12	5
GGCTGTGGGTCGGTTC	alt_5780_new	7	6	11	8	2	16	12	9	20	4
CCGGTATTTAGTTGGA	alt_5780_new	6	6	7	7	8	2	6	5	6	1
TTCATTGTCGCGCTTT	alt_5780_new	178	264	202	167	201	183	268	145	281	156
TACCATATTCGGTAGG	alt_5780_new	151	183	164	146	211	154	208	158	233	143
TTTGTGCTCATACTGC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CTACATTTATTCAGTT	alt_5780_new	72	77	66	50	90	48	67	48	72	50
AGCTTCTTCTAAGCTT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TCGTCAATCGGCCCTG	alt_5780_new	19	25	13	11	21	7	30	15	22	16
CCAGACACAACTCTTT	alt_5780_new	9	25	23	21	21	8	23	10	30	12
AATTCCCACTGCCTGG	alt_5780_new	58	78	82	65	88	73	95	68	96	69
AATAATTAAAGTTTAG	alt_5780_new	0	0	0	0	0	0	0	0	0	0
GGTAGGATATCCAACG	alt_5780_new	61	79	71	54	68	63	80	56	85	59
TATTCAAAGGGGATCT	alt_5780_new	87	94	89	82	128	83	122	92	149	98
CATATTTAATTCCTAT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CTCTGTCGATATAAGG	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TAGGCATTTTGCATTA	alt_5780_new	1	3	1	3	2	1	1	2	0	0
ATAGAAGTCACGCGGT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TTCGCGTTTGAGGAAA	alt_5780_new	32	24	27	26	32	22	36	38	31	21
CCTAATCTTCGATATA	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CACGAGGCGCTCGCAG	alt_5780_new	3	2	5	10	11	6	16	9	7	5
TGCTATCTAAAAGCAT	alt_5780_new	56	77	59	54	85	44	66	47	91	53
ATCCAAATGGATTGGC	alt_5780_new	49	67	60	65	68	51	69	48	90	44
AACCCCACCGTAGGCA	alt_5780_new	54	45	59	51	52	44	55	35	65	30
TTTTGTTATGCCTTGT	alt_5780_new	13	11	10	9	19	12	11	9	6	13
TGTGGTGTCCTTGGAA	alt_5780_new	18	16	21	9	14	8	22	11	19	13
TCGTGTTTACCGTTCC	alt_5780_new	41	37	43	24	38	29	52	31	52	24
TCCCATTGTACCTCCC	alt_5780_new	0	28	0	0	35	1	27	0	25	1
CCTGCCATAAGTAGAT	alt_5780_new	3	3	7	3	3	3	13	1	6	2
GCATATACCTTGGGGA	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TACACACAGATTTGGT	alt_5780_new	127	165	173	145	185	145	213	124	183	96
GGTCTCAATGTCCACC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
ACGTAATCCGGAGTCC	alt_5780_new	11	18	13	10	18	10	13	10	17	8
AGCCGTAGTTGTATCT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TCTGTTCCGCTTGGAC	alt_5780_new	5	10	9	9	14	9	16	9	13	5
TTGCTCGGCTAATTGG	alt_5780_new	16	24	33	21	24	22	31	19	30	12
CTGATATACTCTATTA	alt_5780_new	8	11	8	9	14	6	9	7	10	5
CTCCCCCTACTAGCTA	alt_5780_new	0	7	0	0	8	0	14	2	6	0
CGAAAAGCGGACACGT	alt_5780_new	4	6	10	3	7	4	10	4	14	4
TCGCATTCTCAGAAGC	alt_5780_new	155	193	186	156	213	119	218	178	223	140
GAACTCGGTTGACGTC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TTGGAATATTAGGCTG	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TACCTCTCCCTCTGCT	alt_5780_new	16	14	14	11	21	6	23	11	25	5
TATATTTGTTTTGTTA	alt_5780_new	54	93	63	55	88	56	81	45	73	58
GGTCGTGTTTGGTTGC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CTTTCAAGATTTATGG	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CCAAATCGCCTATATG	alt_5780_new	123	212	130	109	241	126	234	131	260	102
ACGCTGGGTTCTGTCG	alt_5780_new	8	3	4	2	4	2	7	5	3	5
CTACCCGCTCTGTACT	alt_5780_new	10	24	8	9	18	10	18	13	25	6
GCTATAGTATTGGGCT	alt_5780_new	11	16	21	21	14	12	21	20	38	21
GGGACAGACCTATCCG	alt_5780_new	2	1	2	1	4	2	2	6	4	0
TGAATTGCATCTCAGC	alt_5780_new	25	30	21	27	24	16	28	22	23	18
CTCTTAATGGCCCCGT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CATATGGTGGTGCAAT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
ATTGTGGCTGAGCATG	alt_5780_new	4	10	4	5	5	2	8	9	8	3
GCCGGCGAGACCAGTT	alt_5780_new	9	17	8	6	16	12	15	11	14	7
GGCAGTGCGTTCCGGG	alt_5780_new	15	26	11	17	22	19	15	12	27	4
ATGAGTAGATGTTTCA	alt_5780_new	11	16	22	11	21	13	18	4	24	12
CCCTAGACGCTGTGGC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
AGTACTACGGTTTGTA	alt_5780_new	12	19	14	11	12	14	19	14	24	11
TGTTAGTACTTTCGGT	alt_5780_new	47	79	53	41	66	48	66	36	57	41
TGCCTCCCTCTACTTT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
ATCGCTAAAACTCCAG	alt_5780_new	27	44	36	31	31	28	28	29	49	19
GAAATCATGGAAGATC	alt_5780_new	10	9	14	9	14	6	15	11	12	12
ATCTCCACTGTTGGAC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
GTATTGTATATCGCGC	alt_5780_new	8	4	13	3	6	3	11	6	16	3
CTTATTTGTCGCCCTC	alt_5780_new	21	28	20	21	42	13	22	9	30	14
AATCTATAAATTCGGG	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TCTGGCGCTCTATGGG	alt_5780_new	20	35	26	24	25	17	20	24	28	24
AGGTTCAGCCCAACGG	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CGACCAAGTGTCCTTA	alt_5780_new	27	37	24	24	27	15	35	15	48	22
CACTGGTTCTAGGGGT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TTGCTCCCCTACGGGA	alt_5780_new	20	30	15	15	22	19	21	18	26	18
ATTATCTCAGTAAGTC	alt_5780_new	6	6	3	4	15	10	4	8	9	5
CGAAGTAGCCACGATG	alt_5780_new	8	8	10	9	15	15	19	6	12	11
TTTTCCACGATCTTAT	alt_5780_new	21	30	25	19	27	23	21	17	40	21
TTTCCTCCAGTGGCGG	alt_5780_new	0	0	0	0	0	0	0	1	0	0
CCTCTTATACAGTTGA	alt_5780_new	0	7	2	7	7	9	8	3	16	1
ACCATGCTGTACGACA	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TCACCAGAATCTACTA	alt_5780_new	39	41	41	33	41	30	46	31	51	32
CACGCATTGATCGTCG	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TGCCGGACCAGTATCA	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CAGGGAACTGGCAACC	alt_5780_new	22	23	31	18	22	23	14	22	22	22
ATCTTTAGTTTGCTCT	alt_5780_new	58	87	74	57	71	61	77	56	79	49
TACGGCCAACGATCGT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
TAGGCGTCTTAACGAC	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CCGCTGGCTTCCCCTG	alt_5780_new	2	5	8	4	7	0	3	3	4	1
CAGTATGATGACAATT	alt_5780_new	0	0	0	0	0	0	0	0	0	0
CCCGTTTGGGCTGGTT	ref_3970_reverse	254	182	262	205	193	201	220	215	215	228
GAAGTACATACCTTGA	ref_3970_reverse	11	18	11	10	17	7	16	10	17	7
GACTCTTTTCTCTCCT	ref_3970_reverse	58	30	60	40	41	45	35	37	27	42
CTCGGTCTTTAAATTA	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
TGTACCAACTTTTGGT	ref_3970_reverse	52	30	54	47	31	44	45	36	40	46
TAGAAATTTACCTCCG	ref_3970_reverse	27	17	24	17	19	16	21	28	23	10
CAATATTCTTGATAGT	ref_3970_reverse	132	113	144	146	102	114	114	117	139	117
TGTCTTTGGAATTTCT	ref_3970_reverse	62	65	89	69	64	94	76	89	89	69
CTTGCCTCCTTAAGTG	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCCTATGCGTATT	ref_3970_reverse	47	44	46	31	37	35	39	41	43	32
TATCATTTTTCACAAT	ref_3970_reverse	22	18	30	23	19	25	21	21	25	20
GGGTTGCATTTCGCGC	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
TACGTGGCCCCTTGGT	ref_3970_reverse	19	22	26	23	22	35	18	13	14	24
CACCAAATATATTTCT	ref_3970_reverse	194	134	209	158	130	160	156	162	159	172
ATATGACGATGCGGAA	ref_3970_reverse	106	82	124	103	82	85	79	82	109	91
CAGAACTTGGTGCTTG	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
CTGTATGGCAACGGAA	ref_3970_reverse	63	78	77	50	47	65	62	52	65	49
TCACCTCTTTCTGTTT	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGCTTAGCCCGAG	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTGTTATTCCCAC	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
GTTACACGATGAGATT	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
TATTGAACTTCACATG	ref_3970_reverse	54	41	57	52	44	31	51	49	49	42
ATTGTAGCCTGAAAGG	ref_3970_reverse	4	15	13	20	7	6	8	8	8	9
ACTCTCAGGTTCTCCC	ref_3970_reverse	40	35	27	35	24	30	20	14	23	37
CCAGTGGCGTGTCTCA	ref_3970_reverse	5	15	3	3	6	6	6	3	14	7
CGTGGTTTGGTTTTGT	ref_3970_reverse	70	59	85	70	83	71	93	67	100	59
TAGGATCGTAGGTCTT	ref_3970_reverse	35	34	39	40	34	25	39	36	40	34
GGCTCATTCACCAACC	ref_3970_reverse	27	15	15	28	15	16	18	21	17	20
GGCCATCGCCCTCGCG	ref_3970_reverse	33	51	48	45	57	40	33	51	41	28
ACTTTACCTTCTTCCT	ref_3970_reverse	93	77	105	91	94	79	86	69	110	78
TATCTGGCCACTCTCG	ref_3970_reverse	15	9	27	25	14	18	18	16	13	12
TTGTGACAGCGTTCTT	ref_3970_reverse	250	246	315	237	247	228	297	243	291	226
TCTTGGTCACGTGGCA	ref_3970_reverse	12	19	21	16	15	12	16	4	17	11
GTACCACTTCGTTGTC	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
ACACTATAATAATCGT	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
AATCCTATTACAGCTC	ref_3970_reverse	129	153	154	128	121	135	154	105	140	108
TTTTCTCGCCTGGCAT	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
GACGTTCATGGGTGCC	ref_3970_reverse	25	13	19	10	13	15	13	3	18	10
TCAACATCCGGGACTG	ref_3970_reverse	94	77	111	85	85	98	72	95	77	103
ATGAACGATACCTTGT	ref_3970_reverse	86	101	105	91	90	97	103	105	97	86
TCCTCTCGCGTATGGT	ref_3970_reverse	51	55	57	54	55	52	56	57	58	50
CGTGTCGATGTCTCCG	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCCCTGAATAAGT	ref_3970_reverse	15	24	19	28	16	15	17	23	11	9
CCTTATTTTACATGAA	ref_3970_reverse	42	49	53	46	43	36	52	32	49	31
CTGTTTTCCCACATTA	ref_3970_reverse	37	26	50	26	25	27	29	35	35	28
TACACCGACGTCTTAC	ref_3970_reverse	12	19	15	12	17	8	16	9	18	13
CCGCACAGTTCGGCAT	ref_3970_reverse	24	35	42	37	30	30	28	36	37	28
AGTTGAGTGTCAAGGA	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCTGTTACCAGCT	ref_3970_reverse	33	37	51	23	36	30	32	40	30	25
TTCTTTCGCTCAGATC	ref_3970_reverse	8	15	13	7	11	16	24	9	14	4
TGAGTTTTTTTGAGCC	ref_3970_reverse	84	82	128	93	85	66	102	88	102	84
AACTCCTGTTATCGTT	ref_3970_reverse	192	177	218	162	164	208	144	179	181	166
CCCGGTCTTACTTTAC	ref_3970_reverse	57	52	51	42	54	55	56	38	81	34
GGGCGCGCATCCCTCG	ref_3970_reverse	34	26	52	52	36	31	46	29	47	25
AAATATGGACGACATG	ref_3970_reverse	105	64	115	100	69	109	70	89	70	108
GCCTACTTCCCTAAAG	ref_3970_reverse	58	80	62	82	86	60	85	53	97	66
GTGCTGTTGATAACTC	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCATGGCACTACT	ref_3970_reverse	63	69	104	86	56	58	52	68	60	59
CCAGTCGTCGGTCCTT	ref_3970_reverse	10	12	9	9	8	8	4	5	6	3
TGCGCCTTTGGTATCT	ref_3970_reverse	5	2	7	5	3	11	4	12	8	5
ACGATCTAGTCGAGCA	ref_3970_reverse	6	10	8	6	8	4	9	3	6	4
ATTCCTTTGAGTCTGG	ref_3970_reverse	23	23	31	17	22	29	24	19	26	15
ACTTCGCCCCTCGGTG	ref_3970_reverse	31	24	41	40	20	32	28	22	17	29
TTTGTGGATAACAGTG	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
TTACGATTTTCTTGTC	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
GCAGCTCACACCAACG	ref_3970_reverse	48	59	57	59	58	56	46	43	50	54
TGGGGCTGCTACCGCA	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
ACATAGGGGTACAGCG	ref_3970_reverse	29	21	59	52	39	29	29	39	31	26
ATTCCCAGGGGCAGTT	ref_3970_reverse	35	27	33	25	32	26	23	38	30	15
GATGTTCCCAGGAAGC	ref_3970_reverse	10	5	9	7	7	3	8	9	6	3
TTCTAGGTCTTATTAA	ref_3970_reverse	43	40	34	41	46	50	43	41	33	38
TTTGGAGCAGCAAGTC	ref_3970_reverse	16	13	33	28	19	27	12	21	22	20
GTATGGTCAGCTGTCC	ref_3970_reverse	13	14	18	22	15	17	18	14	15	11
TATGAGGCCAAATTGC	ref_3970_reverse	6	4	5	2	7	2	5	13	2	6
CTCGCCCGTCTGTCTT	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGTCCCTGGATGA	ref_3970_reverse	52	67	72	60	65	66	56	52	61	40
TCTTTCGGTTTTAGCT	ref_3970_reverse	43	36	48	51	27	35	45	36	36	41
ACTCCGCTACCTAGTA	ref_3970_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGCACTGATTTCT	ref_3970_reverse	45	34	45	42	27	36	36	35	31	40
CTGCTTGGATATAAAT	ref_3970_reverse	27	40	41	32	35	35	35	29	52	37
TACTGCAGTACTCTGT	ref_3970_reverse	34	41	81	61	47	59	54	56	54	48
TTGGTGGACAAACATA	ref_3970_reverse	24	26	25	24	18	23	27	25	30	23
TATGCTAGGCCCGGGC	ref_3970_reverse	74	64	62	67	55	60	75	37	87	61
GGTATGCGTGTCCTCA	ref_3970_reverse	4	2	6	4	5	3	7	4	7	3
GGTCGTGTTTTGGGTT	ref_3970_reverse	134	100	151	123	140	88	119	104	125	100
AGTTTACGGTATCGTC	alt_223_reverse	10	15	13	11	18	12	12	5	15	9
CGGCCTAATTTGGGAT	ref_223_reverse	166	184	176	156	168	163	183	160	195	123
AGTAAAATAATGTTAA	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
GTGCAGGTCGGATGAA	alt_223_reverse	32	21	18	21	19	21	19	10	32	17
ATGTCTTCAGTAGACG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGGACTGCGCATT	alt_223_reverse	6	2	6	4	4	5	8	11	4	6
TTCTTTTCATTTTGAA	alt_223_reverse	34	42	42	34	26	24	29	23	31	31
CTCTTGCCGTGGCCTT	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
TTCTATACGAACTTTG	alt_223_reverse	38	47	29	37	57	34	49	43	62	36
ATACTTATAAGTTGTG	alt_223_reverse	56	62	59	44	67	48	68	38	84	40
CCTCGCTTGTTCTTTG	alt_223_reverse	5	3	3	2	4	3	4	3	11	6
GGGTTTCGTTCGATTG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
ATACAGCCGAATACTC	alt_223_reverse	0	2	1	3	6	2	0	2	1	2
TGGTCTCATCGCAGGA	alt_223_reverse	15	4	10	9	8	13	6	4	6	11
TGTGTGTATATTGCGC	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAAATATCAGGTA	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTATGCGCTCCGA	alt_223_reverse	10	13	5	14	7	8	15	9	12	6
TTACTGTGTCGAGTCG	alt_223_reverse	141	144	178	156	152	134	159	142	149	116
GTATTCTCCTGAGTGC	alt_223_reverse	12	22	31	32	33	36	25	21	34	23
GTACATTATTAAAACC	alt_223_reverse	32	35	52	30	49	29	37	38	39	44
TAAGCCGAACTCGTAT	alt_223_reverse	4	4	9	2	8	3	5	3	5	3
GTTGTTGGGGCTCGCC	alt_223_reverse	20	19	14	13	14	17	8	19	21	21
AGCTGGTTCCACTCCG	alt_223_reverse	118	199	130	129	161	96	188	105	183	116
GTAGCGTTTTTGTGTA	alt_223_reverse	0	0	0	0	0	0	1	0	0	0
TGAAGTAGTGTTGTCG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
CTAATATTAGGAAAAT	alt_223_reverse	16	7	7	8	5	5	8	7	14	5
GCTGGGTTTTGGATAG	alt_223_reverse	2	8	3	1	4	2	0	3	3	1
TCTTCATACGCTTGGC	alt_223_reverse	27	38	43	30	44	32	56	22	39	32
TTCTGGCAATTCCCCA	alt_223_reverse	134	117	132	123	123	112	94	119	129	132
CCGTGGCTCGGTTGGA	alt_223_reverse	14	14	10	8	6	17	21	11	10	14
GCAGCCGAGCATGACG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
CCGCATATTTCGCCTT	alt_223_reverse	2	3	6	1	1	1	2	2	3	1
GCCTCGTTTTTCGTTC	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
GTTGAATAGCTGGAAC	alt_223_reverse	47	72	65	51	67	49	67	51	70	59
TAACTCGACCAGGCGC	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTGGGGGTGACG	alt_223_reverse	10	6	5	13	8	9	3	5	11	7
ACTTTGCCACTATTAG	alt_223_reverse	7	12	4	5	7	13	9	10	13	16
AGCTCGTGCAACCACG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTACTGCCGAGT	alt_223_reverse	47	47	70	52	52	46	47	39	34	40
TGCCACGTTTCGAGTG	alt_223_reverse	3	7	4	8	6	5	6	4	6	3
CTTGCCTCCCCGTTTC	alt_223_reverse	1	11	4	3	9	2	13	4	16	2
TCACGTGCTGTTCACG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCGGTTCCTATTT	alt_223_reverse	21	27	24	25	29	12	20	15	28	25
ATCTTGGGGTGTCTGC	alt_223_reverse	48	65	59	70	61	45	73	42	82	49
GACCGCCTGGTACATC	alt_223_reverse	29	32	28	34	38	27	22	26	36	16
ATATTTTTTTTCCTTC	alt_223_reverse	14	13	16	14	8	15	16	6	10	10
GAGCCCGTAAAACTTG	alt_223_reverse	42	51	64	45	74	40	56	39	90	36
GGTAGTCTTTAAGTGC	alt_223_reverse	75	76	79	53	85	74	71	53	77	48
GGGAACCTAGCCTGCG	alt_223_reverse	5	24	8	9	6	12	6	7	16	7
TTCCTGGGACCGCATG	alt_223_reverse	62	59	44	57	68	38	49	41	64	37
GTCCGTGCCTACCGGC	alt_223_reverse	3	4	1	3	4	0	7	3	6	1
TTTAAATAGAGTGGTC	alt_223_reverse	6	7	6	4	5	9	8	8	9	3
TTCAAGACGCTCACGG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
GGGAATACCTACCAGG	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCGGTCTGGGCGT	alt_223_reverse	0	0	0	0	0	0	0	0	0	0
GAAATGTCTGAATCTA	ref_5199_fdr	46	59	56	38	74	33	59	16	65	35
TCCGACTATTACCCCA	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTTTGAGCCTGG	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CATGTATACCGCAAAC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTCCCTTCATCAA	ref_5199_fdr	4	19	8	7	11	3	13	3	8	6
TAAGCGTAGAAGGACT	ref_5199_fdr	33	43	31	32	49	27	50	24	59	30
ATGCCGTATGTCGTCA	ref_5199_fdr	10	15	17	9	30	7	24	9	15	8
TAGCTACTGGTCGAAG	ref_5199_fdr	18	32	12	19	50	21	54	18	53	11
TTTACGCTATTTCTGG	ref_5199_fdr	20	26	25	26	47	21	34	14	33	20
CTGTTGTGGACAATTT	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CGGATTTGCAGCCTGC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTTCTTTATTAAG	ref_5199_fdr	4	11	12	15	17	5	14	8	17	6
GTTGAAACAGGTTATA	ref_5199_fdr	13	31	22	17	31	16	35	26	30	15
CCCATGTTAATATTTG	ref_5199_fdr	0	7	2	2	2	0	1	2	9	1
GCGACGCTCTGTCCGC	ref_5199_fdr	3	4	2	1	1	1	4	0	2	1
TCTTTCACTTTTCTAG	ref_5199_fdr	24	52	20	33	43	15	42	19	49	21
TGCTCATGTTCTACTG	ref_5199_fdr	33	59	28	21	62	29	72	21	74	23
ATGCCGTCCCTTTGGC	ref_5199_fdr	26	51	34	24	54	18	69	12	62	23
AGCCACTCTTAGTGTG	ref_5199_fdr	15	34	20	6	51	11	53	15	85	7
GTTGGGCCACATACTC	ref_5199_fdr	15	25	17	12	11	6	17	8	19	4
CGTCATTTGCAAGGCA	ref_5199_fdr	14	56	12	3	52	13	51	22	46	14
GGCTTCCTTTGTATGT	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
GCATTTTACCAAACTC	ref_5199_fdr	0	2	0	1	1	1	1	2	0	0
TTATAGTAATCTTACC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CGAGAATCAACCTCTG	ref_5199_fdr	22	75	54	34	64	31	62	28	77	27
TTCTTCCCCCACGTCT	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
AATCAATCTAATTAGA	ref_5199_fdr	65	95	93	65	92	59	92	55	98	37
GTTATTTATTCGGAAG	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
GCTACCTAGGGATCCT	ref_5199_fdr	63	177	90	79	194	73	234	70	189	65
TCCGGTTCGCTTCTAC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCACTTGATTACG	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCATTTCTCCAGC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTCAGCGTAAACG	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCAACTGAAAGTT	ref_5199_fdr	33	76	61	33	76	42	80	26	81	36
CGCTTTATGTGGTTTG	ref_5199_fdr	9	29	21	17	27	14	31	20	32	13
CGCTTTACTATGTCGC	ref_5199_fdr	29	40	25	27	45	26	39	30	49	34
TTTGGACTGTATTTCC	ref_5199_fdr	6	3	6	5	8	8	2	5	8	2
ACGGCTTTAACTCACA	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTCTCTAGACCCC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
AGCACTTAGAGTTACT	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
GGGCATGTGGCCAATC	ref_5199_fdr	6	15	23	14	11	17	18	17	25	10
GCCCAGTCTCATGCAA	ref_5199_fdr	5	9	1	1	5	7	8	4	9	4
CGATATAGATTAGGAA	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
GGCATGCAGTCGTGCG	ref_5199_fdr	1	45	7	6	19	2	18	3	28	1
TCATGTTGCCGGTATC	ref_5199_fdr	3	13	6	7	11	6	13	5	20	4
CATGTTAGAGCACGAT	ref_5199_fdr	16	30	26	18	31	14	50	30	50	31
ACGCAGGCCTGGCACG	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCTGATAGGGCTC	ref_5199_fdr	47	94	42	45	93	29	79	27	84	56
AACTTGTAAGTTCAAC	ref_5199_fdr	44	90	48	54	88	43	115	46	86	44
CGATATAGATTTGGAA	ref_5199_fdr	83	135	108	65	148	64	151	77	107	66
ATTACTTTCGGTTTCG	alt_5199_fdr	26	55	42	40	45	45	62	30	63	30
TACTTTGGATAGTGCC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CAACGAGCCCCTTTCG	ref_5199_fdr	2	6	4	0	5	0	7	0	6	5
TCCGTCTCAGAAGTGC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAACTCGTCGATG	ref_5199_fdr	58	103	72	54	113	48	95	52	116	65
TAGGGGTATGCACTAT	ref_5199_fdr	32	53	28	32	75	33	58	23	50	26
ATGACGTGTTGTTCCG	ref_5199_fdr	45	77	66	47	69	38	66	44	99	43
ACCCTATCTATTAAAA	ref_5199_fdr	6	7	4	4	6	5	3	1	10	3
TTTTGGCTTACGACGT	ref_5199_fdr	89	150	110	86	142	63	165	105	169	80
CGTCTCCAATTACCCT	ref_5199_fdr	5	24	8	6	15	2	28	7	13	5
ACCAGGTCATATAAGG	ref_5199_fdr	25	91	32	16	88	26	87	23	102	25
GCAGCTACTAGGTGAA	ref_5199_fdr	1	5	5	3	6	2	13	2	8	1
CCGCCAAATTAAACTT	ref_5199_fdr	20	68	36	19	67	20	53	19	60	26
CCCACATGTGAAGTGA	ref_5199_fdr	26	121	28	22	114	14	154	19	112	13
GCTAATATCGGACTTC	ref_5199_fdr	23	43	22	27	35	26	37	16	49	23
AGGGATGCAATTTTTG	ref_5199_fdr	25	26	23	15	46	23	56	13	42	16
TCGCGGCTTGGACTGG	ref_5199_fdr	22	38	29	22	31	23	32	23	38	21
CCAGATTAGGACATCC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCTAGGGGTCTC	ref_5199_fdr	12	18	17	15	34	22	29	15	27	13
AACGCTCTTGTTCCAC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGTCCAATCCAGA	ref_5199_fdr	16	27	20	10	24	10	32	7	22	12
CAATGTTAATTTCGTC	ref_5199_fdr	3	6	4	5	3	3	1	1	7	5
GTACTGATTGATCCAT	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
ACCTCGCGTACTGTAT	ref_5199_fdr	24	40	28	24	38	24	48	26	63	19
TTTCCTTTCACCTTTA	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
CATGTTCCCTGGGAAA	ref_5199_fdr	19	24	9	20	33	12	29	12	24	16
CACTCCCTTTAAGTGC	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
AGGCCTTAATTTCTGA	ref_5199_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTAATATGCATCC	ref_5199_fdr	46	84	46	47	65	42	57	42	84	30
TACCGGTACTCTTTAG	ref_5199_fdr	190	389	234	185	438	178	400	148	448	168
CTATAGCGATGTTACC	ref_5199_fdr	46	118	52	45	92	28	89	32	121	36
CCCGACCCGCTCGAAT	ref_5199_fdr	1	7	5	8	9	1	8	2	2	4
AATTTCGCTGTTATAC	ref_5199_fdr	25	45	36	27	35	25	61	26	57	16
GTTATAACACCGCAGA	ref_110_reverse	6	11	16	15	17	5	7	5	12	11
CTCCATTCATGCATAC	ref_110_reverse	2	6	1	3	2	1	0	3	1	0
TGATCCATTGGTTTGG	ref_110_reverse	23	40	27	24	34	17	37	21	41	14
AGCGTATTGGGTCTCG	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGTTATAAGTCCA	ref_110_reverse	128	237	164	122	205	119	212	118	232	143
TTGGTCAATCCCAGAG	ref_110_reverse	37	82	48	35	65	30	52	39	60	36
TGTGTATCATTCTGAC	ref_110_reverse	36	45	44	35	52	30	51	31	56	28
ATAATGGCGATCCTTT	ref_110_reverse	33	24	19	15	40	33	26	21	44	31
GTTAAGGGCCTACTCG	ref_110_reverse	25	48	50	37	52	33	42	28	54	37
TAAATCTCACCGCATA	ref_110_reverse	53	45	44	43	55	42	34	45	65	18
TGCAGGCTTCAACCAA	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GCTAACTGACAACGAC	ref_110_reverse	20	38	25	24	38	30	47	23	41	16
GCCCATGGTATCCCTA	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
CAAGGGCTACCCCCGT	ref_110_reverse	34	52	28	38	49	24	71	31	61	31
CAAGTGTAGCTGCGGA	ref_110_reverse	10	23	17	11	20	9	22	19	20	13
CAATCCTTCGATCCCG	ref_110_reverse	121	143	124	126	160	132	143	110	155	87
CTCCCCATGTTTCGCA	ref_110_reverse	3	63	8	2	58	8	65	4	75	6
CTCGTTCTCGAGATGC	ref_110_reverse	20	32	25	21	30	20	35	19	34	13
GCAGTCCAGTTGTACT	ref_110_reverse	6	10	9	3	5	3	10	5	7	6
AATTGCTACGGTCTAT	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
CAGGATAAAAACCTAA	ref_110_reverse	6	11	6	10	14	4	9	6	19	6
GCTGGATTATGCACGC	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCTGATAATAAAC	ref_110_reverse	18	37	21	16	36	21	34	13	37	17
ATTTTTGGGGCGCTCC	ref_110_reverse	30	51	45	37	50	34	45	21	58	32
CGCGGGGTATTTTTTC	ref_110_reverse	3	9	6	5	14	3	11	5	6	3
CAGTGTTGGGGGGAAA	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
TATTCAAACACTTGTT	ref_110_reverse	90	189	127	102	156	101	183	68	192	92
GTCTCGCCATAATTGA	ref_110_reverse	0	0	0	0	0	0	0	1	0	0
CAACCTCTTGATAACG	ref_110_reverse	19	99	19	17	94	19	94	12	87	19
TCTCATAGAATTCATT	ref_110_reverse	12	17	15	19	15	7	14	12	9	5
CTATAGATCAGCCCAG	ref_110_reverse	53	64	53	50	77	40	53	50	77	36
GATATAGTGTCAGTTC	ref_110_reverse	24	24	29	19	20	19	33	18	38	14
GTCGCTTGGCCTGGAC	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
ATCACGCTTGTTCTAC	ref_110_reverse	9	13	8	5	14	10	11	3	7	8
CACATTGCGTCCCGTT	ref_110_reverse	42	57	42	34	62	44	52	35	47	36
CAGTCGCGGGTTCGAT	ref_110_reverse	33	41	40	31	42	21	51	26	49	24
CACCATTCCTAGCTAT	ref_110_reverse	3	4	7	5	7	7	8	11	6	3
AGGTCGAGTTTTGTAG	ref_110_reverse	0	0	0	0	0	0	0	1	0	0
CGCCTTCGGCATGTGG	ref_110_reverse	15	17	16	23	17	13	11	13	20	14
TTGGCCGATGTATGTC	ref_110_reverse	43	50	33	48	55	31	63	30	65	49
TAAAACTTACGTGGGC	ref_110_reverse	236	461	280	280	396	228	490	173	456	216
TAGTCGAATACCAGAT	ref_110_reverse	21	44	35	26	29	22	46	16	50	16
TAGAGGGCCGTTATTT	ref_110_reverse	19	29	16	15	21	11	18	14	18	10
GTATTCCATAGTCGTC	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTACGGCGTTAGT	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTAATGTGTGCC	alt_110_reverse	69	95	92	78	96	66	96	56	118	64
TCGAATCATCGATCGT	ref_110_reverse	34	52	48	37	32	34	45	30	47	33
GGTGTTTGCGGATCAC	ref_110_reverse	24	49	28	23	45	23	34	25	34	30
TCATTCGTAGGGTGCT	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GACCATGATCATTTTG	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTCGATTTTCTCT	ref_110_reverse	67	99	83	61	88	76	102	63	92	67
TCGGCTAGGCATGCAA	ref_110_reverse	6	10	12	8	2	3	17	5	13	4
ATTTCGGAACATTAAT	ref_110_reverse	161	219	210	185	204	156	209	156	241	161
GTTTTGCTTGCTTATG	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCGTAATCAGACG	ref_110_reverse	17	42	28	11	29	17	51	21	42	12
CGAGAGGTTTTTAGGA	ref_110_reverse	9	24	24	15	20	10	23	14	20	22
TTACTTAGCAATGGAC	ref_110_reverse	85	90	93	101	137	81	107	101	136	103
AACGCGCTTGTATTTG	ref_110_reverse	18	38	26	33	37	34	37	23	54	25
GCCGCGTGTGAGCACC	alt_110_reverse	126	171	162	138	181	143	221	105	214	124
CCTTTTGCATTCGGCT	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAGTACTATCTCC	ref_110_reverse	8	53	15	8	38	6	54	10	47	8
GCAGTCCGTTAACTAT	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCACCATTCTTAT	ref_110_reverse	54	106	63	49	93	66	94	62	109	54
GTCGCTAATTGTACCG	ref_110_reverse	136	197	164	139	197	134	189	122	224	119
ACCCTGGTATGGTGTT	ref_110_reverse	15	15	12	13	19	15	20	9	19	8
CTAAACGTCGCTACCA	ref_110_reverse	11	17	13	11	24	8	12	10	22	8
CGGTAGGGGGATATGC	ref_110_reverse	16	21	28	15	14	20	19	17	26	7
AAAAACTTACGTGGGC	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGGCCTCGTTGG	ref_110_reverse	11	10	10	17	25	6	13	7	21	4
ATTACTGGTTCGGCCC	ref_110_reverse	22	37	30	16	25	17	26	23	23	17
TTTCCATCCTTGACCG	ref_110_reverse	61	103	109	65	111	83	114	67	138	72
CATGGTCGCTATAGAC	ref_110_reverse	27	38	25	33	41	22	40	19	38	29
TTCGTGCAGTACCCGG	ref_110_reverse	21	27	24	26	22	24	33	18	26	21
ACCGCTCGGCGCGATT	ref_110_reverse	44	76	65	38	80	54	73	32	90	39
CCGGTACTCGGGAGTT	ref_110_reverse	5	10	12	9	15	15	7	5	8	8
GGTAGATACAAATTCC	ref_110_reverse	5	7	13	5	9	8	10	3	9	4
TTGTGATTAGTTGTGC	ref_110_reverse	12	34	16	25	31	11	35	13	44	14
ACTTGGAGAACCCGGT	ref_110_reverse	40	73	60	54	79	58	72	50	55	43
ATTGTTGTCAGACCTA	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GTGAAGGCCGAGTTGT	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GCCAGCCGTGAAGCTC	ref_110_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCTTAACACTATA	ref_110_reverse	60	77	67	59	91	64	94	51	85	38
TGCATTGCGGCTAGTT	ref_110_reverse	14	21	10	14	24	9	15	8	29	13
ACTGGGTCTAGAGTGT	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GCCATCAGGGCTAACG	ref_6011_new	70	108	89	112	102	82	102	80	129	73
ATCAATGCAACTCGAT	alt_6011_new	24	32	25	21	20	16	33	18	26	22
TCCCAACACTATGCAC	alt_6011_new	40	54	42	40	58	36	58	24	56	34
GTGTTCGTAAGGGCTC	alt_6011_new	13	20	18	10	14	12	18	4	18	9
TTCAAGGCAAGAGTTC	alt_6011_new	3	12	14	2	18	11	8	9	17	14
CTTGACCGGCTTAATC	alt_6011_new	8	11	3	12	20	9	10	8	19	4
ACATAACTGTTCCACT	alt_6011_new	14	25	14	12	23	14	27	9	22	7
TAGCCTCATCTTGTAG	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GTAGCCAGAAATTTAA	alt_6011_new	58	111	89	55	98	71	70	62	119	75
GCTCCTTAGGTGCTCA	alt_6011_new	9	39	9	19	37	4	35	14	34	7
CGTTTTTAAGTGCCCG	alt_6011_new	84	115	109	90	103	88	116	87	130	86
CACGAGACGCCCTCTC	alt_6011_new	57	59	59	49	51	39	77	49	64	58
GCATCTGGGTGCCGCA	alt_6011_new	0	0	0	0	0	0	0	0	0	0
CTAGGTGCGACAGCGT	alt_6011_new	1	6	3	0	2	1	4	1	4	3
CCGTCCGAGCAGAGCT	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TTGCAAGTTTTTGCAC	alt_6011_new	10	25	25	9	17	11	26	22	28	7
GTGATGGATCGATAGG	alt_6011_new	78	91	104	67	106	83	124	91	101	60
GTTTGCAAAGATCGTT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
GAATGTAGCTGTCTAC	alt_6011_new	169	263	192	177	218	162	253	136	280	174
AGCCATTCACCTCTTA	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TAACTCCAGACCTCGG	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GTAGTTATGGACCCGG	alt_6011_new	15	20	16	12	12	17	17	7	15	16
CGCGGTTAGATCGATA	alt_6011_new	147	166	145	140	221	123	156	130	172	105
GAGGTGGGTTTTACGC	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GAAGCTAGTGTAGGAT	ref_6011_new	74	80	62	55	72	46	83	62	101	46
CCTTGGCCACCCGTAC	alt_6011_new	2	11	2	2	13	1	5	1	7	3
CCGGCTAATGGTTCCT	alt_6011_new	1	12	0	0	1	3	2	1	10	1
GGGGCCAGCCTGCTCT	alt_6011_new	61	78	66	65	73	53	82	54	65	41
ACTCACATTGGACGAT	alt_6011_new	114	219	180	134	233	153	218	129	269	108
TCATCATACCTTAAGC	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GTTATTCGCCAGCCAA	alt_6011_new	1	6	3	1	2	5	4	0	5	4
ACGATACATCGCAAGA	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TCTGATCCCGTCTTGG	alt_6011_new	5	9	5	4	8	3	12	7	14	0
TCTCTCGATATTTTTG	alt_6011_new	102	124	126	91	117	111	155	90	123	109
TTCATCCAGAATGTTC	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GTGACTCTTATGCTCC	ref_6011_new	176	213	200	196	218	152	207	167	213	165
TTCCTGGAATTCGATG	alt_6011_new	32	42	31	26	53	32	38	33	46	33
AAAACTTGTCTCTGAG	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TCTCCTAGCTTACGCG	alt_6011_new	6	2	1	3	4	3	3	4	5	0
CCTCTTTGGGCGTAAT	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TCTGTTTAGCGACGCA	ref_6011_new	63	119	87	74	105	80	112	80	118	63
CCGACACTGCGCTGGG	alt_6011_new	93	104	85	86	111	72	84	84	125	83
TAGCGAAACATTTTGA	alt_6011_new	26	46	30	30	28	24	28	21	33	20
CACTCCGCTTTGAACC	alt_6011_new	4	16	0	4	17	3	11	2	15	0
TGAAGTTGCCTCCCCC	alt_6011_new	59	69	89	66	85	61	66	59	83	81
TCATGTAGAGTACTCA	ref_6011_new	8	9	8	6	6	4	10	4	5	8
CATAAGCCCTTGGTTT	alt_6011_new	11	38	22	27	22	17	42	12	26	15
ACTAGACTGAACTTTT	alt_6011_new	61	69	75	50	82	46	62	44	77	47
CAGCAATTCCTTTAAA	ref_6011_new	62	97	86	69	131	66	102	66	110	54
CGGAAGACGATATCGG	alt_6011_new	48	76	55	54	55	48	76	48	76	45
TCTGGCAGGTCTCATA	alt_6011_new	5	8	6	2	7	10	12	9	8	8
GTTGTCTGGTTTTTGC	alt_6011_new	23	29	18	23	27	22	26	14	31	19
TCTCACTGCTCGCTAA	alt_6011_new	32	44	57	56	28	44	52	28	35	35
CCCGTATGCTTCATCC	alt_6011_new	19	81	33	38	97	26	85	23	104	22
GATGGTCGCATTGTTT	alt_6011_new	76	81	97	80	88	93	88	67	104	74
GATTAGAACGTGTATA	alt_6011_new	32	39	53	25	57	48	40	26	53	45
GCCGCGCCCAAACCGC	alt_6011_new	1	7	5	4	10	7	7	9	8	8
TCTGCATCTCACATGT	alt_6011_new	32	31	30	33	45	30	29	15	51	26
AGATCTTCCTCGCGCT	alt_6011_new	23	32	16	23	29	9	22	18	29	19
ATTGCGTTTTTCAAAA	alt_6011_new	86	94	94	84	92	84	90	62	87	51
GCTACTGTTCTTTTTT	alt_6011_new	0	0	0	0	0	0	0	0	0	0
CACCTCTCGATAGCTT	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TCTCTAGTCTAGATGA	alt_6011_new	0	0	0	0	0	0	0	0	0	0
ACCTCCCATGAAGACT	alt_6011_new	41	63	33	40	60	36	48	35	53	34
TAGTACTTCTCCTTGA	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GATTTTATGGCCGCGA	alt_6011_new	0	0	0	0	0	0	0	0	0	0
GGACATCGTTCGATTT	alt_6011_new	150	159	164	157	146	125	202	101	213	112
TTTGCACGTACTCTCG	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TTTCATCAATGTCTAG	alt_6011_new	79	121	93	80	85	72	129	54	104	69
ACTATTGTTATCCGGG	alt_6011_new	21	35	31	15	39	17	44	18	39	24
TTCTCCGTTACCGTTT	alt_6011_new	22	35	29	19	29	14	42	18	20	30
TGCGGACATCGATGCC	alt_6011_new	102	164	162	144	159	133	181	109	161	123
AGGTCTCGCCTGGAGT	alt_6011_new	0	0	0	0	0	0	0	0	0	0
CATTGTTTCCGGATGG	alt_6011_new	127	162	154	129	150	98	169	90	173	104
TGCCTGCTCGACTGCA	alt_6011_new	1	5	4	4	2	1	2	2	7	1
TATCGCAGTAATAAAG	alt_6011_new	0	0	0	0	0	0	0	0	0	0
TTTAGCTGCGCCATGG	alt_6011_new	36	38	39	40	42	46	38	24	41	39
CGGAATTTTATAATTA	ref_222_reverse	26	9	23	18	19	16	26	15	17	19
GCCAACAAATGAAGCG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
ATGACGCTTGCGTTGT	ref_222_reverse	17	15	18	20	16	20	18	18	7	16
AAAGTAAGATTCCACC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
ACCATCATATGCGAGA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCTCCCTCTTACA	ref_222_reverse	33	29	44	33	39	36	31	57	43	36
TCGGTAACTAAGATCT	ref_222_reverse	11	6	10	6	12	9	6	8	19	6
CGATGGCCGGTGTAGT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTTTATCTATAGG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCTGGTTTGGTTG	ref_222_reverse	22	19	39	25	16	17	17	17	19	10
GTAGCGCAGTTTTTTC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGTATGTGAGTA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
AAACGGCCATGTCGCG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCATAAAGTCCGA	ref_222_reverse	52	66	92	72	62	66	54	44	75	61
TAGCTTTTAATTGGAG	ref_222_reverse	31	19	30	24	20	25	26	22	17	16
AATGGCCATACAGCGT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CGAATCGGCATACTCG	ref_222_reverse	17	23	14	8	22	12	22	13	20	16
CAATTTTTTTTTCAAG	ref_222_reverse	48	64	66	40	55	54	55	56	74	49
TTTATAATTTCTCTCA	ref_222_reverse	20	16	20	7	16	6	9	8	13	17
ATATCCGGCGTTCGAC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
ATAATGGGTTACTATT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TACGACTGGTGGTGTG	ref_222_reverse	21	22	47	21	28	32	24	26	19	33
GCCCTTGGGCAGTTTG	ref_222_reverse	40	51	51	35	45	49	50	39	53	32
CGTCCACCTGCCATCT	ref_222_reverse	9	9	12	6	15	8	10	3	7	6
AATTGTTTCATCTTGT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TTGCATTACGGAGAAG	ref_222_reverse	250	244	312	240	273	218	267	224	289	225
ACGCACCCTGGAATAC	ref_222_reverse	12	12	23	20	21	18	21	16	10	16
CCTAGAAACGCGCTTA	ref_222_reverse	22	17	23	21	12	14	18	16	9	19
AAGCCTTGTTGTCGAC	ref_222_reverse	16	19	23	12	18	10	21	19	19	18
TTTGGATCACATGCAA	ref_222_reverse	23	24	34	27	22	17	25	23	21	32
ATATGCGGATGCCGTT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TTATTGAGATGGTTCT	ref_222_reverse	13	5	11	9	5	14	6	9	8	10
CACGCCCCAAGAGACA	ref_222_reverse	0	1	4	2	2	1	2	1	3	2
AATTATGGGTTTCTCC	ref_222_reverse	11	10	19	16	8	16	9	1	6	12
AGTCCATTACAGAGTG	ref_222_reverse	73	59	81	58	73	72	71	64	48	64
CTTTTAGTACTTTGGA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CGATTTACGTCTCGAA	ref_222_reverse	65	48	83	66	53	68	68	48	49	67
CCGGCGGTTGAAACTT	ref_222_reverse	3	14	2	2	9	2	16	0	7	1
GCAGGACAGGTCAGTT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGTACAAAAAACA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCTAATCATCCGG	ref_222_reverse	46	32	39	51	36	51	56	49	50	43
GCCGCGGCAAATGTAG	ref_222_reverse	33	33	25	25	25	18	22	36	23	16
TATTACGTAGTTACAA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTACCCCGAACAG	ref_222_reverse	0	0	0	0	0	1	0	0	0	0
ATGGTATTTCGTTTAT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCAGGTCGTTATA	ref_222_reverse	157	179	175	146	207	131	177	164	185	154
CATACGCCATTATCAT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GTTAATTATATCACCC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GTTAGATCGCAAGCCT	ref_222_reverse	61	63	89	69	64	72	49	76	52	53
TCGTCAGCTTATTATC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTGGGGTATGACA	ref_222_reverse	20	16	16	15	13	9	15	15	17	12
CAACTGGCTCATTTAG	ref_222_reverse	91	93	90	74	110	74	88	79	96	91
GCCGCAAGCGTTTTGC	ref_222_reverse	26	15	28	21	20	18	18	24	26	24
ATGCATGGCCCCAAGG	ref_222_reverse	43	34	51	38	51	49	39	40	37	40
TGACCCACCCTCCTTA	ref_222_reverse	28	13	22	23	14	16	17	11	21	11
GCTCTGTGCTCTGCGA	ref_222_reverse	16	16	22	18	17	22	13	11	23	30
AAGATTAGCAACGTGC	ref_222_reverse	187	146	208	178	192	153	182	196	183	158
ACATCCCCCTAAGTTA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GATAAGCGCTGGAAAA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGGGACTAACGGG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CGATGCGCGCTACGCA	ref_222_reverse	18	25	17	17	23	14	16	15	20	14
GTATCGCTCGATAACG	ref_222_reverse	2	5	5	10	5	6	3	6	5	5
CGTGTGATCTTCTGGG	ref_222_reverse	82	52	73	71	51	69	68	74	72	78
CCGGATTAATCGTACC	ref_222_reverse	81	68	82	71	64	64	61	66	67	68
TCTTATCTATAATGTG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CCGGAGGAAGCGAAAC	ref_222_reverse	8	5	11	8	12	15	7	5	9	5
TGTCTCCATTCCCTTC	ref_222_reverse	60	57	84	64	58	64	64	63	54	76
TTGACATTAGTGCCTG	ref_222_reverse	35	40	47	23	32	38	31	31	33	22
TTGGTAGCCGCCCCGC	ref_222_reverse	97	98	102	89	100	102	116	107	119	121
CGTTCTAAGGCGTCTA	ref_222_reverse	35	47	34	31	37	32	44	34	36	22
ACCGCGCATGAAAGTG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGCCATGATGATA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TTAGACTTGCAAGCAA	ref_222_reverse	11	13	12	15	11	18	11	11	16	10
CTTGCGGACTCTGCCT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GGTTACAAGTGGGTGC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TATTATTCGTGACCGG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GGCATAATCCTTCTGC	ref_222_reverse	11	2	9	6	9	6	4	10	8	8
GTTCCCCCCACTTCCT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CAGATTCACTTTAGGG	ref_222_reverse	65	44	81	63	53	49	43	57	63	54
CCGCGTCACGTTCTTC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TATAGCTGATACAAAC	ref_222_reverse	86	109	155	124	100	131	134	123	135	123
TTCGGCTATGAAACTC	ref_222_reverse	66	59	57	48	55	60	41	47	54	59
TTCGAGCTCGGTGTTC	ref_222_reverse	9	11	12	9	10	13	6	11	4	6
TCTCCAGCAGTGACGC	ref_222_reverse	3	8	7	3	8	3	14	5	10	4
CAATTTTTTTTTTCAA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGTATCTAGAACA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GGTCATTTATTGTTGC	ref_222_reverse	103	123	143	118	125	100	115	99	105	85
TGCGACTTTCCTTCTG	ref_222_reverse	27	47	57	38	56	36	43	30	39	32
CTCTGTCGTCAGCCGA	ref_222_reverse	18	27	19	18	32	24	40	23	17	19
CCGACAGTTTCATGGT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTTGTGTGCCTGC	ref_222_reverse	0	1	0	0	0	0	0	0	0	0
CGCCTGCCCATCATAC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGGTTTGTCAAGT	ref_222_reverse	39	37	50	42	60	42	52	51	53	36
ACTTCGTTACATTGTT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAGCATTCCTTTG	ref_222_reverse	23	19	19	21	19	24	9	13	21	21
GCTGTTTCATACAATT	ref_222_reverse	29	34	29	31	40	48	40	24	37	33
CCTCTAGTTTTAACAA	ref_222_reverse	56	48	65	43	66	53	67	53	59	61
GTCGTAGGTCCTCTTT	ref_222_reverse	16	5	6	10	11	15	14	7	14	10
TGGGACCCCCAGTCCA	ref_222_reverse	78	56	71	64	41	52	55	57	54	55
CACGCACATGGACCAT	ref_222_reverse	33	27	36	33	25	23	23	31	26	29
AGAATCTCGTAATGTG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TCTAATAGCTGGGGAG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTAGCTAGGGACA	ref_222_reverse	5	7	14	8	1	16	16	9	9	15
TAAATTAGCAAGTACC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TTATCGTCGGGTTTGG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TCACCAAGTGTCATTA	ref_222_reverse	16	24	24	28	28	14	21	18	26	22
CATAAAGCGACAGAGT	ref_222_reverse	26	10	17	18	22	19	29	21	14	20
ATTATTCTCGATAGGG	ref_222_reverse	4	7	4	3	4	5	4	2	5	3
AGGCTTCATGCTCAAA	ref_222_reverse	4	7	4	7	10	3	5	7	3	5
AATGTACGAGTGCAGC	ref_222_reverse	5	4	10	8	8	6	12	8	7	4
AGACCCAGTCAACATT	ref_222_reverse	29	23	26	42	43	42	29	24	30	25
AAGGAGCGAATCTACG	ref_222_reverse	7	4	7	8	11	7	7	6	12	4
TCAAGGCTTGTGGAGA	ref_222_reverse	42	53	50	43	48	55	52	46	44	33
TTTACGCTTTGGCCGT	ref_222_reverse	8	10	8	12	7	5	8	10	12	9
TTGTCAATTTCATACA	ref_222_reverse	4	5	9	9	3	7	12	3	11	5
CACATTGCATCTTGTC	ref_222_reverse	7	10	19	20	28	10	11	22	13	11
CGTCAGTCTATCTATC	ref_222_reverse	64	77	95	75	78	70	66	62	61	66
GGAACCTTGCCACCCA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGATGATTGTCTA	ref_222_reverse	7	14	9	9	8	11	7	5	12	6
CTATTACCGTGATCCA	ref_222_reverse	5	7	10	12	13	12	6	17	10	13
TCCGAATAAGCTAGGG	ref_222_reverse	18	24	32	18	18	23	16	16	24	25
TCTAATTGCCTTTGCA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCTATGGACGATC	ref_222_reverse	46	40	49	55	32	29	43	32	50	43
CCAACTTTAGTGCCAA	ref_222_reverse	49	40	51	47	54	43	37	36	68	32
GTTTAGTGTCTTTTGT	ref_222_reverse	1	1	2	3	2	2	2	3	1	2
CGAGTGGAAGCCTACG	ref_222_reverse	4	6	12	10	4	8	3	2	5	2
GGGTTGTTATTACTTG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CACTTATAAATTATTT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGTGATGCTGTAT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTACACTATGTTG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
AGTACATTTTAAATTT	ref_222_reverse	11	16	20	22	26	23	12	23	17	9
GTGTGAGCGCCGTTTG	ref_222_reverse	63	89	74	72	76	78	100	69	111	70
GTCTTTTCATTTCCGG	ref_222_reverse	20	12	14	14	16	11	16	7	8	17
CGTGCCGTACGTTGGA	ref_222_reverse	56	52	107	95	62	57	62	59	69	82
TCTGTCCTCATTGCCT	ref_222_reverse	29	25	31	33	28	28	20	30	26	29
GCGGTCTCCGGGTTCA	ref_222_reverse	53	50	63	54	51	48	57	54	60	58
TCTTTATGATTCCGTG	ref_222_reverse	4	1	4	6	2	6	1	4	1	5
TCCTTGGAGTGTCATT	ref_222_reverse	55	54	64	69	65	45	59	32	62	40
TACTATTCCGTCGACG	ref_222_reverse	21	17	21	22	13	12	14	18	21	20
TTTTTTTAGGTTTTCT	ref_222_reverse	75	54	78	53	67	55	80	69	78	54
GGCCTCCTTGGCATAA	ref_222_reverse	38	44	56	42	53	48	48	42	54	41
AATCGTTACGAATAAA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TACGCATTTTCGCAGC	ref_222_reverse	50	52	55	46	63	63	75	44	59	55
CTTTTTTCTTCCTCGT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGATACGCTCCTG	ref_222_reverse	25	29	28	26	32	23	34	31	43	22
TGCTTGCTCCCTTGTT	ref_222_reverse	50	55	58	49	64	50	58	52	62	64
GTACTTGATACTGGGA	ref_222_reverse	40	39	41	56	41	31	40	28	44	42
CACCGCGATTGTTCTT	ref_222_reverse	22	43	35	22	36	21	33	38	36	23
GGCTTTGCTTACGGAT	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TACCCTACTCTTCTGA	ref_222_reverse	18	21	21	11	21	13	12	15	21	16
GCGACCAATTCATTCG	ref_222_reverse	13	14	10	6	11	7	9	15	14	11
TTTTAGCAGATAGAAA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTAATTGTATATA	ref_222_reverse	29	40	35	28	31	18	43	27	47	30
TAGATCTTCCGTAGCC	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGGGGAACACTTA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAACCATACATTG	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTCAGATATCGA	ref_222_reverse	28	22	24	26	21	26	26	21	22	12
TTATGTGGCTCCTTTC	ref_222_reverse	41	30	52	47	38	47	32	50	57	36
TGGGCATGCCAGCTAC	ref_222_reverse	59	50	48	48	33	32	48	55	46	33
GGCCATAAGCGTACTG	ref_222_reverse	23	27	23	23	14	25	19	19	14	18
CCTAATTTTGAAGTGA	ref_222_reverse	0	0	0	0	0	0	0	0	0	0
GATATCGTTATTGTGC	ref_222_reverse	83	89	94	83	105	71	90	67	78	69
GACGAGATCAATCAGA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
GTCATGTTGCACCGTT	ref_5691_new	27	32	26	31	50	28	29	32	22	21
AACCCCCTTTACCTCT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
GGTGATATAATTAGGA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
GCTTACTTGTCTGCCC	ref_5691_new	69	92	84	78	71	43	98	77	89	65
TAATGAACAAATAGCT	ref_5691_new	20	19	22	10	27	26	20	16	30	10
GCGGCGTAATCGGCCT	ref_5691_new	28	41	52	18	33	25	41	22	32	36
TCCAATTAATCGGGTA	ref_5691_new	47	80	94	50	50	51	71	27	83	37
GAATTTGTGAGTAATC	ref_5691_new	110	136	120	102	111	121	124	99	183	110
TTTGCGGTGGACCATA	ref_5691_new	19	12	12	15	14	19	20	16	23	7
GACATTTACCCTGGGT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CGACCTCGAGCGGCCC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TTATGATCAGATCTCC	ref_5691_new	46	73	72	55	56	46	83	53	69	37
GCTGTCCTAAATCGGG	ref_5691_new	0	0	0	0	0	0	0	0	0	0
ATCGACTGCTACCGTG	ref_5691_new	28	21	27	14	26	14	29	17	22	11
ACGGTCGGAGGTTGAG	ref_5691_new	26	63	34	26	44	38	45	46	49	31
CTCTAAAGTATGGCAA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CATGCCCTCTATTTCC	ref_5691_new	13	12	19	14	18	12	10	16	22	11
CCTGGTGGCCAGTCTC	ref_5691_new	25	37	31	26	48	26	36	22	42	35
ACCAGCATTATGGACT	ref_5691_new	50	94	75	57	90	37	95	57	94	48
CTCTATAAATGTGGCT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
GATAGGATGCACGTTC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
GCCAGATATCACCTCA	ref_5691_new	39	67	42	34	68	31	69	22	56	39
ATGTGATCGAATGCTT	ref_5691_new	7	13	15	11	18	6	20	8	17	18
AGTCCTTCGGGTCTAA	ref_5691_new	44	49	34	25	60	29	51	35	59	36
TGCAGTTCAGGCTGTT	ref_5691_new	52	90	76	52	100	51	94	55	94	58
TCTTGGTTCCTGGCTA	ref_5691_new	12	30	28	25	27	21	30	31	26	18
ATGGTTGGGGCTTCTT	ref_5691_new	50	55	55	61	44	47	57	48	85	36
GAGGTTGACTTCAGCG	ref_5691_new	40	45	37	35	53	43	46	30	67	33
TTAAAGGCGTGCATGA	ref_5691_new	39	45	55	45	53	34	58	28	44	23
TGTTTGATCCAGCCTG	ref_5691_new	6	9	8	18	16	14	22	9	22	6
TGATCCTCTAAAGGTA	ref_5691_new	26	39	32	41	31	34	39	33	52	28
GGCCTTGTTCTGAAGG	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TTTAATCTTATCCTCC	ref_5691_new	116	151	164	104	160	102	156	112	173	107
CCTCAGGTAGTGCGAC	ref_5691_new	31	54	39	31	61	27	60	9	66	27
TACAGCGAATGCGAGC	ref_5691_new	5	4	3	2	0	2	4	1	14	2
CCGGCTCACCGAGCCA	ref_5691_new	17	54	16	23	35	32	30	12	37	22
GGTTACCATCATATCC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TTTGGGTTCACATTCT	ref_5691_new	5	6	6	7	11	4	12	4	12	5
ATCCTTTCCTCTACCC	ref_5691_new	28	48	35	17	36	16	37	20	41	20
CGGCGCTTTCTAAGCT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
AACGCATGAAAATTGC	ref_5691_new	6	13	8	7	19	7	12	3	6	3
TAACAAATTGAGTTGC	ref_5691_new	36	31	31	27	33	30	30	25	39	34
TGTTTTGGAGGTCTTC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TCAGCTAGGTTCTGCT	ref_5691_new	4	15	11	7	19	7	26	7	34	14
TAGCAAGGATCGTTTG	ref_5691_new	92	142	137	101	184	98	152	100	146	101
CTTTGGTTCGGTGCTA	ref_5691_new	63	103	104	84	107	76	129	74	153	76
AACCTCGTAATTGGTA	ref_5691_new	28	48	37	38	34	25	63	35	33	26
TCTGCTTAGGAGTCTT	ref_5691_new	20	31	27	27	36	24	39	25	36	16
CACTGTGGAAAGTAAA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CTTGCACTACTACATA	ref_5691_new	3	31	11	2	34	5	24	7	27	10
GAATCGTCCACATGCC	ref_5691_new	5	8	9	6	13	4	7	4	9	5
ACCGGTCACTAGGAGC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TGCATCGGATACACGA	ref_5691_new	22	23	17	17	21	5	24	14	17	15
CGGGAACTCTTGTAAC	ref_5691_new	15	16	9	9	11	7	9	6	22	9
CTCGCGCGGGCATTAG	ref_5691_new	7	7	2	4	8	4	6	1	5	3
TGCAAAGCACAAGGTG	ref_5691_new	55	69	59	42	51	39	84	51	64	43
GGTGTAGAAGTGCTAT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CCGCCGCGACTTTGGC	ref_5691_new	42	60	49	52	86	36	68	32	68	36
CTTCTTCAACTTACGT	ref_5691_new	36	26	40	36	41	29	45	36	41	33
GCACCACTCGTTTGGC	ref_5691_new	10	17	4	7	6	5	10	9	9	5
CGGAGCAAGCGCCCCA	ref_5691_new	17	19	25	18	18	21	24	11	24	18
CCCACAAAAGCTCACC	ref_5691_new	2	2	3	2	3	0	4	4	6	2
ACATTGCTAATCCAGG	ref_5691_new	4	18	9	7	8	4	10	11	4	12
CGTACGCCCGTTCTTG	ref_5691_new	109	144	128	127	167	98	183	110	167	99
CCACCTTAGGCATCAC	ref_5691_new	11	55	26	20	67	6	53	14	67	11
ACCTTACAGTCTATAC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CCGCTAGTTCTAACCT	ref_5691_new	18	36	28	20	32	20	34	28	25	20
CCATAGGAACGGATCC	ref_5691_new	21	31	26	25	31	27	40	18	29	19
ATAAGCTGTTTACCAT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CGAGAGCCTTATTGGT	ref_5691_new	34	55	40	46	68	39	54	39	63	26
GATTCTCGTCTCTAGT	ref_5691_new	17	20	19	6	25	12	26	11	27	14
CAATTTTACCACCATC	ref_5691_new	88	89	101	79	110	72	105	76	118	70
AATCTATCGCGGGGGC	ref_5691_new	14	14	16	12	24	9	18	6	20	9
TGTAGGTCCAGATCCA	ref_5691_new	3	5	2	3	3	1	3	5	1	1
CCTTTTTAATCATTTT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TGGCGTAACTTTGTGA	ref_5691_new	4	20	17	13	15	12	13	13	13	9
AAGGAACTAACCGCTC	ref_5691_new	4	3	5	1	7	6	2	2	4	2
TTCGTGCTTGTTATAT	ref_5691_new	54	77	69	58	66	56	61	57	89	45
TTGGCCTCAAGCAGTT	ref_5691_new	28	57	52	40	72	29	69	33	46	42
AACGCCGCTTTACAAG	ref_5691_new	45	45	47	34	34	16	49	38	52	20
CCCGTTTCATGCCTGC	ref_5691_new	34	45	48	31	40	52	52	29	30	33
AACCCGCCATGCTTCG	ref_5691_new	9	11	15	10	6	11	10	3	18	7
TTGCTCCTCCAAGGGT	ref_5691_new	2	5	6	6	7	4	3	10	3	2
AGCAGTCATTTGCTAC	alt_5691_new	29	66	44	47	89	34	62	43	110	30
ACCGCATTGTCGTAGA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CACTATCCGAATGTAG	ref_5691_new	19	26	23	12	39	20	29	17	30	18
CCACCATCAATACCGC	ref_5691_new	1	10	1	0	4	0	12	2	12	0
ATCCTCGCGCCCGAAA	ref_5691_new	7	4	10	6	5	8	9	12	7	10
TTCCTTCGATTGTCGT	ref_5691_new	121	165	153	127	192	106	167	124	174	95
ACGGGCGCCTGGGTCA	ref_5691_new	24	17	23	13	25	22	20	23	25	12
CCACTACCGACTTAAG	ref_5691_new	10	14	5	10	8	1	16	11	12	12
CTATCCTACATGGTCG	ref_5691_new	7	12	16	12	23	10	21	12	15	14
AACCGATACACGGATA	ref_5691_new	10	7	12	2	1	4	5	3	5	7
TCTGTACCCCGCGAGG	ref_5691_new	0	0	0	0	0	0	0	0	0	0
ATGTCCCACAGCAGCA	ref_5691_new	16	23	16	26	38	25	27	17	21	23
CTATCGTCCACATTCG	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TTTAACAACATATTGG	ref_5691_new	15	19	15	20	17	14	25	14	16	11
CGTAGGCTAGGGGCAT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TTTCCTTTAGAGCTCT	ref_5691_new	19	36	28	32	45	24	31	26	29	27
CTACTGGCAGTCGGTT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TCGCAGGGTCAAAGGT	ref_5691_new	61	73	66	62	75	56	70	42	107	46
CCGTAGGAGCAGTACT	ref_5691_new	21	45	34	26	49	33	58	24	66	30
TGTACTCGTCTTTAGC	ref_5691_new	10	9	5	14	10	5	10	4	3	3
CACGTTTTTTAGAGAC	ref_5691_new	69	84	77	48	75	53	76	62	82	58
CAGCACTCTTGGGCTA	ref_5691_new	10	32	15	33	42	22	26	23	25	19
GCGAGAGGTTAGTTAA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CCTTGATAGTGGCAAT	ref_5691_new	8	1	9	7	8	12	8	8	17	6
ATTGATTAGCGTGTCG	ref_5691_new	13	13	21	13	11	8	21	7	18	14
GTCAAGACACCCGTGC	ref_5691_new	3	0	1	1	3	1	2	3	2	1
TACCTTTGCGATCATT	ref_5691_new	3	24	15	28	38	13	19	15	29	10
AACTTAAAAGACGTTC	ref_5691_new	42	83	56	66	67	65	74	65	83	57
ATCCCTTCGTTATACA	ref_5691_new	24	40	26	41	36	40	45	25	61	25
CGTTAATCGCTGTGCA	ref_5691_new	47	53	48	47	57	40	53	34	78	51
GCCAATTATGTTTGAA	ref_5691_new	13	33	29	13	36	22	39	22	38	28
CTCTGGTCTTTTGCTG	ref_5691_new	4	9	6	7	9	4	2	6	7	9
GTTATTGTTGCGTCAA	ref_5691_new	14	27	26	20	24	22	29	15	29	11
CGCCGTAATTATGAGA	ref_5691_new	15	30	32	16	24	14	24	11	33	16
TAAATTGAATTTGTTC	ref_5691_new	19	40	52	35	33	36	42	25	50	22
CACGCATTTCTGTCCC	ref_5691_new	26	19	31	30	37	27	34	22	40	22
GATATCTACGTGTCTT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TTGGGTGCTGAGGCCC	ref_5691_new	256	347	375	321	353	317	380	280	370	239
AAATGATGCTCGTCGA	ref_5691_new	86	134	104	77	112	102	131	95	120	68
ACTGGGCGAATCGACA	ref_5691_new	50	54	40	35	55	36	60	42	45	27
CGCCATACTGCGCCAT	ref_5691_new	12	28	8	8	22	4	26	10	34	7
AGGTATACCTAATCTT	ref_5691_new	42	48	51	51	69	52	41	32	45	40
GTGCTGGGATTGAACG	ref_5691_new	17	34	34	23	34	14	45	30	51	18
GCGTGATTTTATGGCC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
GCTTAGTAACGTGTAC	ref_5691_new	20	24	10	11	40	12	32	14	26	16
TTATGTTGTCTTCTCT	ref_5691_new	38	32	38	28	31	38	24	26	35	36
GATATTTCGGGGAGCG	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TGTTCGATTGCCTTTG	ref_5691_new	6	28	9	9	17	12	22	10	11	10
TACCTCAGAGGGAGGA	ref_5691_new	66	70	76	63	78	61	99	45	86	50
GTGACTCGTTCGATAT	ref_5691_new	65	61	65	71	83	64	81	61	69	57
CCTGAAAGCGATCTTT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
GCAGAACCTATGGAAC	ref_5691_new	7	6	3	7	17	6	8	3	7	7
ACTTCGGTTTATGTCC	ref_5691_new	12	33	33	28	27	19	28	31	33	17
GACTGCAGGAGTTAGT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TATACTAAAGCGATTT	ref_5691_new	19	22	20	19	29	5	24	17	29	16
GTAGCTACGGCGCCTG	ref_5691_new	49	66	45	53	64	46	61	43	82	45
CACTTCAATAAAAGTT	ref_5691_new	47	53	66	40	36	41	62	41	64	38
TTAGCCACTGGTTTTA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CATGCAAACATCTTCT	ref_5691_new	0	0	0	0	0	0	0	0	0	0
CGACCTGCTACTTTTC	ref_5691_new	16	8	18	12	16	10	6	10	19	9
TCTTGTTCATACATAC	ref_5691_new	23	24	33	30	35	29	35	18	40	21
GGGGATAATACTTTGG	ref_5691_new	20	25	16	24	26	21	28	22	24	22
TGCAGCAATCGAGGCG	ref_5691_new	5	10	6	9	13	7	12	14	11	8
TGGTTGATTGCGTCTA	ref_5691_new	0	0	0	1	0	0	1	0	1	0
ACCCGAACCAATTGTA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
AGGGGAGCAGGCCGTC	ref_5691_new	11	26	15	5	13	10	19	10	10	12
ATTTTCGGGGTCTCTG	ref_5691_new	41	53	53	46	55	33	66	54	58	41
ATTCAAAATGATACGG	ref_5691_new	88	98	104	85	111	87	104	91	123	63
AGTTTTTTTCGCTCTC	ref_5691_new	5	4	7	3	10	6	7	5	7	5
AGTCGCCCGCAATCGA	ref_5691_new	3	3	2	3	3	4	5	3	6	3
TATTACTTCCTAAACT	ref_5691_new	9	15	11	7	10	9	9	10	13	9
TACGACCTGGTCTTCT	ref_5691_new	6	8	15	9	7	2	18	7	10	6
TCACCAGAGTGGCCCC	ref_5691_new	2	8	5	2	4	2	4	2	6	5
TGGTAATCTTGTCTGC	ref_5691_new	0	0	0	0	0	0	0	0	0	0
AGGAGGGATTCTAACA	ref_5691_new	0	0	0	0	0	0	0	0	0	0
TTTACCATTGTGAGTT	ref_5691_new	36	49	56	36	49	44	56	27	64	30
AAAGATGTTAGGTTGA	ref_5691_new	14	34	24	31	22	29	32	17	39	20
GGAGATCCAGGTTTTG	ref_5691_new	62	59	55	36	77	42	64	55	91	44
TCGAAGATAGTTTATG	ref_5756_new	33	46	33	27	49	31	70	17	63	12
GGACGCTAATATTTAA	ref_5756_new	14	30	19	18	15	18	42	13	35	13
TTAAGGCGCACAAGTA	ref_5756_new	0	0	0	0	0	0	0	0	0	0
CCCCCCCGGTGGCCTT	ref_5756_new	2	16	2	1	9	3	7	2	10	3
ATACGAAAATATTGTT	ref_5756_new	8	16	6	4	2	3	11	2	4	3
TAGGTATGGGATCGTA	ref_5756_new	4	6	3	1	5	2	7	0	7	1
CAATTGCTAATTTTTT	ref_5756_new	3	19	13	9	13	9	15	11	19	11
TGCCGCTTTGCCTTGA	ref_5756_new	39	69	39	60	74	33	94	43	85	23
CACCCACAGGCCGCCA	ref_5756_new	12	20	12	13	15	16	23	13	23	16
ACCAGGGATCCTTATA	ref_5756_new	32	51	36	32	57	28	57	39	70	29
GTCTCATTCGCATTTG	ref_5756_new	13	46	21	15	34	12	35	9	41	13
TTCGCTTCCAAATAAC	ref_5756_new	11	26	19	17	28	22	54	18	46	21
TAATCTCTAGAATTAG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TCCAGACAGCGCATGT	ref_5756_new	0	0	0	2	1	2	6	3	5	0
CGGGCACCGGGCACGT	ref_5756_new	26	32	25	28	62	24	56	28	46	28
CTTTCCGCAATTCCTC	ref_5756_new	1	6	3	0	4	1	2	0	1	2
ATTTAGTTAACGTCAT	ref_5756_new	39	56	22	41	40	22	57	21	71	34
TCCTGGTTCGTAGCAT	ref_5756_new	2	5	1	3	7	1	1	0	7	1
TACGTGTGCTCGTACG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
ATCCGGCACCATTATT	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TTGTTGAAATAGCCCT	ref_5756_new	9	27	19	11	24	13	28	15	28	13
TGACTGTCAGCAAGTA	ref_5756_new	8	30	27	19	27	19	20	30	38	12
ATTATCCAGGCTAGGT	ref_5756_new	10	17	7	5	27	12	8	10	16	6
TACCGTACGTGTTGAT	ref_5756_new	11	28	23	14	30	18	23	19	39	13
CGAATACTATTGGTCT	ref_5756_new	33	94	45	32	71	43	86	36	78	25
GAGTTAGCTGTATCCA	ref_5756_new	3	4	2	4	9	5	7	8	9	3
TACGTGATTGTAAGCT	ref_5756_new	10	32	9	9	28	11	29	12	38	12
TTCCTGCACAGTAATT	ref_5756_new	9	26	8	9	17	14	27	6	20	6
CGGGCATGCTATATCG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
AACGCGATGGCGTCCT	ref_5756_new	7	13	16	11	12	10	8	13	16	4
ATGCATGCCGCTAAAG	ref_5756_new	92	170	139	89	179	82	193	75	231	80
TCTCACATGCACGATT	ref_5756_new	205	333	219	211	386	181	359	175	393	174
TATAAAACCCTTGGTA	ref_5756_new	31	66	34	32	70	30	78	17	78	28
CTCCGTAGTAATCTGT	ref_5756_new	23	82	36	27	50	34	89	29	70	24
CCACAATTGGGGTATG	ref_5756_new	43	66	43	32	79	34	84	40	79	27
CGGCTATTCGGACGGC	ref_5756_new	55	92	68	60	79	42	114	53	119	51
TGGCTAGCATTATTCG	ref_5756_new	12	19	15	6	15	10	25	8	19	7
TTTAAAATTATTCACT	ref_5756_new	0	0	0	0	0	0	0	0	0	0
GTGGCTCTTATCTCCA	ref_5756_new	5	0	1	0	2	0	0	0	0	1
AAAAGCGCTGGCCGGC	ref_5756_new	18	20	20	9	33	10	28	13	19	18
CATACAGATCCGTAAG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
GCCCAGTGTTTCTGCG	ref_5756_new	9	17	12	10	23	7	19	13	22	9
GGTGTACGCTGCGAGC	ref_5756_new	0	0	0	0	0	0	0	0	0	0
CTTTGTAGGTCGTCTC	ref_5756_new	21	41	22	21	36	20	34	14	51	20
GACCGAAAATTAAGTA	ref_5756_new	46	93	56	39	92	47	111	37	89	52
GCTACAGGAGACGGTG	ref_5756_new	43	87	34	54	80	43	83	42	98	29
GGCGGTATGCGGAGGT	ref_5756_new	36	46	44	39	61	33	58	30	56	26
TTTCAGCGTGAAACTG	ref_5756_new	5	16	4	6	7	4	7	6	13	11
GCGTGGTACCAGACGT	ref_5756_new	0	0	0	0	0	0	0	0	0	0
ACCGGTAATCTTAAGT	ref_5756_new	0	0	0	0	0	0	0	0	0	0
ACATCACGCAGAGCTT	ref_5756_new	6	22	6	5	11	6	12	3	13	6
TCTGCCAGGATCAGTT	ref_5756_new	0	0	0	0	0	0	0	0	0	0
AGTCGGATTCTCGTCC	ref_5756_new	0	2	0	0	1	0	3	0	2	0
ATCTTCAGGCTCCATT	ref_5756_new	19	25	22	16	22	18	16	10	25	10
GCACACAATAGCCAGC	ref_5756_new	29	53	30	28	41	23	59	29	55	22
CATGATCGTTAATGAT	ref_5756_new	5	19	9	6	19	11	8	13	28	8
CGCATTACCGATGTTT	ref_5756_new	3	16	7	11	20	10	15	11	24	11
AAGATGATAGGTGGCG	ref_5756_new	70	117	71	67	142	63	139	77	123	65
TAGTCCTACCCCCCAT	ref_5756_new	25	92	40	33	74	21	86	25	87	25
TGACTAATCATCGCAG	ref_5756_new	84	110	94	56	110	73	118	76	132	81
GAAATTGCCGTCAGAC	ref_5756_new	20	44	21	25	41	23	51	24	38	24
ACCTAGCTTTCACAGA	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TAGGTTCTTAAGTTGT	ref_5756_new	20	29	34	12	56	14	63	17	54	22
TCCTGGGCTATCTGAT	ref_5756_new	24	43	18	19	53	21	38	18	44	24
ATCTCGGGGCGTCGAG	ref_5756_new	41	84	51	36	90	40	82	39	82	41
CGTCTATATCGATACC	ref_5756_new	20	39	22	10	41	26	35	15	43	22
ATTCTATGTGCCTACA	ref_5756_new	5	7	14	4	9	10	10	3	14	4
ATCCTGTGCATCGGGA	ref_5756_new	17	24	20	19	31	14	25	13	34	11
CGAGCTGCAGCCCGTG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TAATTGGGATTTTGAG	ref_5756_new	11	31	11	9	15	19	35	9	23	10
TAGGAGCTGATAGAGC	ref_5756_new	34	77	38	40	86	27	90	34	108	42
AATATTGTGTGATTCC	ref_5756_new	35	63	30	32	69	33	67	33	63	36
TTTTTTCGACAAGCTC	ref_5756_new	0	0	0	0	0	0	0	0	0	0
ATCACGGTGGTTAATT	ref_5756_new	7	25	21	14	22	24	26	22	17	8
AATTATGGGATTTTAG	ref_5756_new	33	63	38	17	64	26	61	19	57	12
GGAGTCATGTAGGTGC	ref_5756_new	0	5	0	1	1	0	0	0	4	1
GAATGCAGCTTGCGCT	ref_5756_new	1	7	2	6	8	2	6	2	11	1
GGTATCGACTCCCCCG	ref_5756_new	16	119	22	19	134	9	120	11	136	9
CTTGGTTCAGGGTTAT	ref_5756_new	0	0	0	0	0	0	0	0	0	0
CCCTTTATTGAAATGT	ref_5756_new	13	83	23	16	60	22	53	18	81	20
AGGGTGTCTGAAGGAA	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TTATCTCTCATATCGT	ref_5756_new	85	135	105	70	106	74	145	60	143	53
GTTATATGCTTCCTGG	ref_5756_new	16	54	35	27	40	30	51	27	63	22
TTCCTGCTGTGTAACT	ref_5756_new	21	32	22	10	32	16	26	24	32	20
ATCCGGATTTCCAGTT	ref_5756_new	0	12	4	1	9	2	12	0	15	9
CGGACTCCCACCTACC	ref_5756_new	1	13	3	6	18	8	10	4	12	6
CGAAGAGTAGGACTGC	ref_5756_new	3	7	4	10	16	4	11	3	10	6
AGGCACTGCAGACCGG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
CTCGTCCACACTTCTA	ref_5756_new	3	3	3	1	7	7	10	4	8	4
CGATTTCTTGCGGTTT	ref_5756_new	44	98	67	55	101	46	107	58	88	51
GCTATACTACCAGCGA	ref_5756_new	0	0	0	0	0	0	0	0	0	0
AACGCCTTTAGATGTC	ref_5756_new	115	186	141	127	219	115	189	135	239	95
ATGTCATTTTTCTAGA	ref_5756_new	0	0	0	0	0	0	0	0	0	0
CCTTCAAGTAGACCTA	ref_5756_new	0	0	0	0	0	0	0	0	0	0
CCAGAGTTTAACTACT	ref_5756_new	10	39	12	7	43	10	30	9	36	7
CCACAGAAAGGATCTT	ref_5756_new	48	87	63	47	89	42	92	49	80	38
GTTCGTCAGGTTGTAC	ref_5756_new	31	78	48	47	73	36	60	34	71	37
ACGCCTACCAGGTGCG	ref_5756_new	25	41	38	30	52	30	36	20	55	13
GTGTCCATGCGACTCA	ref_5756_new	0	0	0	0	0	0	0	0	0	0
ATTCAACATTTCGGCG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TGAATCTTCGTGTCAC	ref_5756_new	24	36	29	21	40	31	45	22	44	28
TGGGACGTCTCTTGCG	ref_5756_new	46	67	52	39	53	26	76	31	82	27
TGGATCTTGGCACCAG	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TATCGTGTCCGGCCTT	ref_5756_new	34	44	34	24	44	26	33	20	45	27
TAGTTCCTACATGTTT	ref_5756_new	27	39	18	19	41	20	48	15	39	5
GTCGCGTGAACATAGC	ref_5756_new	0	0	0	0	0	0	0	0	0	0
TTGGTCAACTGTACTC	ref_5756_new	9	56	11	10	49	7	71	9	62	4
TCTTGTGCTGTTTGAG	ref_5756_new	12	61	14	13	40	10	46	14	56	15
TGGGTTTAACACAGCT	ref_5756_new	25	43	34	27	51	34	55	20	55	25
TTTTAAAAGGCTTTTG	ref_5756_new	0	4	0	0	3	1	3	1	4	4
TGTTTGCTACGGACCG	ref_5756_new	5	9	8	4	13	6	4	4	6	3
CCAAGCGGCGACGACC	ref_5756_new	8	14	9	9	19	7	22	12	18	6
GGGGAGTTATATCATC	ref_5756_new	0	0	0	0	0	0	0	0	0	0
CTTTTGATATAATACA	ref_5756_new	28	66	34	32	54	15	53	31	65	30
CGGCGCGGGGAAGTGT	ref_5756_new	23	36	22	30	53	18	56	18	49	25
GCGAATCAGAAGACGG	ref_5756_new	30	65	37	42	59	35	71	38	70	30
TATCGCGGCGCACGTG	ref_6063_new	152	187	210	152	216	179	237	172	231	141
TCTCAGTTCAACAAGT	ref_6063_new	7	8	3	3	8	0	9	5	8	4
CTCTATATATTCAGGG	ref_6063_new	50	94	64	55	112	54	114	48	107	57
ATGACTGCCAAGTCTT	ref_6063_new	48	98	58	51	76	71	85	46	82	45
TAGTGCGCGAACTCTG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
CAACCTTCACCGTGCT	ref_6063_new	15	32	23	23	45	15	46	19	43	12
CATCGGGATGTTAGCG	ref_6063_new	8	11	7	3	17	8	16	8	15	6
TAAACAACTAATCCCT	ref_6063_new	20	48	31	25	37	32	36	31	44	31
TCAATGTCTTCCCTAA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TTTCTATGTTGGTGTC	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GAGGATTCTGGGGTTA	ref_6063_new	4	28	20	12	20	13	21	9	33	17
CAGTCAAGGTTCGTTC	ref_6063_new	1	7	1	1	6	1	7	1	5	0
TAACTAATCTGCCTAG	ref_6063_new	15	13	17	17	11	8	19	13	16	10
TTTCGTAAGACTCAGT	ref_6063_new	54	56	59	51	69	39	80	41	59	39
GCATCGTCATTTCTTT	ref_6063_new	23	33	28	26	44	16	45	24	51	22
AACAATTGTTCATCCT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ATGGCGGGTGCCTGTC	ref_6063_new	13	30	14	14	17	23	21	16	27	23
CTTCGGCTCGTTAATC	ref_6063_new	4	8	4	4	10	2	3	2	8	6
CTACTTCACAACCTCG	ref_6063_new	9	15	10	8	17	8	26	7	9	8
GCTCTTGGATTCCTTC	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TCCACTGCAACATCGT	ref_6063_new	6	10	4	10	2	5	6	6	14	3
GTTAACTATTGATGGC	ref_6063_new	57	50	60	47	55	39	64	46	49	32
CTAATGGACTCCGTTA	ref_6063_new	61	95	81	72	81	60	75	62	76	78
GGATGATTTTTAGCTG	ref_6063_new	9	8	15	6	6	6	9	9	6	8
GCTGTCGCTCGTTTGG	ref_6063_new	13	17	12	14	25	13	16	11	23	9
TCATGCATGCCTTAGG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GCACAAATCCGGTGTT	ref_6063_new	16	17	14	11	24	6	17	13	26	12
GTCTAACTATATTGAG	ref_6063_new	9	19	11	7	16	8	13	8	20	8
AACTGTTATGAGCTCT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TCACCTCTAGAACAGT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ACCGTTGTTACTCCTA	ref_6063_new	14	16	16	16	23	14	26	3	18	8
CTAACATGTCCTCTCC	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TATTATCGTTTCTGAT	ref_6063_new	15	15	25	21	21	25	10	16	39	14
TGGATACGTGCCTCCT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
CGCCTTACTTTCGTTA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TCTGCTCCCGGACTCG	ref_6063_new	6	14	8	6	16	9	16	13	23	7
ACGGGATGTTTGCTTA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TGCTCTCACATACCGG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TGAATTGACTTTTACT	ref_6063_new	4	5	3	1	6	1	4	0	7	5
ATTTTTCAAGCCGGAC	ref_6063_new	52	57	59	46	68	46	64	49	54	40
GTTCGGCGGTGGTGAT	ref_6063_new	11	21	19	23	19	16	30	18	27	10
CTGGTTGGTCTCCTTG	ref_6063_new	47	68	40	46	69	57	110	29	111	42
CCGCCTAGAACGAGTA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TCGACGCTTTATCTTG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
CGACCTGTTCGAGCCC	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TGCAACGTTCCCGATT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TTAACTGGCAATTCTT	ref_6063_new	6	11	9	10	18	8	15	19	20	16
TTTATGGCGTGAAGAT	ref_6063_new	32	37	36	30	50	41	42	35	38	26
CCTTGCTTTAAAGCTT	ref_6063_new	9	17	4	10	14	10	10	7	18	5
GTCTTTATGTTAAGAT	ref_6063_new	29	52	43	36	54	54	54	20	59	37
TGTGCATCTAAGTGTT	ref_6063_new	73	118	87	67	116	57	87	78	116	65
CTGGAACTCTGTTGAA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTGTTAATACA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ACTGCGTTGGTAATGA	ref_6063_new	40	76	44	34	64	31	76	38	67	48
GACTACGGCCGAACTG	ref_6063_new	60	73	46	64	78	41	75	39	81	50
CAAGAACTTATCTGGA	ref_6063_new	5	1	0	2	2	2	3	3	10	5
CGTGCCAATGTAGACT	ref_6063_new	5	20	6	12	27	6	12	7	20	8
CCTTCATGCCCACCGG	ref_6063_new	17	40	28	28	31	22	37	21	36	15
CCCTAAGTACTCGGTG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TGTTGTAATCGCTGCC	ref_6063_new	1	3	2	4	5	0	2	0	3	3
TATTCTGTCGGTTACT	ref_6063_new	17	32	19	26	24	17	32	19	40	20
GCATTCATAGGGCAGG	ref_6063_new	43	68	55	57	62	53	90	38	65	57
TCATCCCACCGTTAGG	ref_6063_new	16	26	10	14	24	12	18	13	15	16
TCCCAAATAATGGTGA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
CCTTGACAGCAAACTC	ref_6063_new	0	0	0	0	0	0	0	0	0	0
AGCTGTAATTTTGCCT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TCTCTCTACGGAATAT	ref_6063_new	16	9	16	9	11	9	9	10	13	9
GAATTTCCCTTTTCAT	ref_6063_new	14	17	20	14	14	14	12	14	13	8
AGGAGTATGATAACTA	ref_6063_new	10	20	10	9	16	9	15	8	18	8
TTGTCCTCATTCGTAG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TCTTCGATTCGAGTTT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TATGGGCCATACGAGT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
CCCTCTCCTATGGCTT	ref_6063_new	10	21	16	14	28	5	29	15	32	7
TGTGGCATACAGTATT	ref_6063_new	5	1	11	8	9	11	6	6	4	10
ACCGCGAATGTACTGG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GACCACATTCCATTTT	ref_6063_new	17	12	18	14	23	9	20	21	17	13
TAACGCTATATACGTA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ATTTAGGGTGGCGATA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GTCCAATGTACGCCTC	ref_6063_new	76	100	93	85	115	68	109	71	105	66
ACTCGAACTATCATGA	ref_6063_new	13	11	16	12	25	10	14	7	14	8
GTTCACGCGGAGACAT	ref_6063_new	32	38	35	32	43	32	30	17	31	28
AACTTTCCTAAACTAA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GCTCCGCTTCGATGTA	ref_6063_new	53	122	60	44	130	37	114	59	116	37
GCCTGAAGTTCCGCAA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GTAATGGACCAACACG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ACGCATACGTCACTAA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GTATTCGGTGACGGCA	ref_6063_new	7	6	5	12	7	7	11	10	10	8
ATGGGTTCGTTTGACC	ref_6063_new	21	61	38	29	38	29	38	23	45	33
ACAACTACAGGGTTTG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ACAAAATTGTGCGCCC	ref_6063_new	24	49	33	29	42	19	42	12	49	30
TGAGGACTCCGGCTAC	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TACGTTTTGAGCCATC	ref_6063_new	0	0	0	0	4	0	0	0	0	0
ACCGTATGCACTCCGG	ref_6063_new	8	20	13	12	23	13	19	10	24	7
ATTCATTTGTTCCTTG	ref_6063_new	103	107	113	83	104	107	113	105	108	104
ACTGCGAAAGCTTAGC	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GGCCTTGCTGTCGCCT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
AACGCTTCTCACGTTA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TTGATAATACTTTTTC	ref_6063_new	63	61	64	69	84	74	113	64	105	54
ACGTGGGGGGGTAGGA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ATAACCATGTCGCTGG	ref_6063_new	3	9	6	4	7	2	4	5	7	9
TGGGGTATTTGCCCTG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
CGCTTATGCAAAGGCG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GTAGGCCCCAACGTGT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TCTCGTGCTCGTATTG	ref_6063_new	24	38	21	15	25	25	40	25	32	23
GTTTGTGCACTCGAAT	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GGACGTTAGATCACTG	ref_6063_new	3	5	15	6	9	15	7	7	16	16
AGTCCGGCGTTTATCT	ref_6063_new	13	21	22	20	22	14	28	11	17	11
CCGCACGGTGGCTTGA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GGACATCTCGCTGTGT	ref_6063_new	7	13	10	4	11	12	12	8	6	13
CCCGGCATTTATTCCT	ref_6063_new	13	20	14	19	29	14	27	8	13	16
TTATTGATTGTTACCC	ref_6063_new	14	28	16	8	15	6	17	8	24	7
GGGAATGAAGGGAGGA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
TGGGCTACGTATAAGG	ref_6063_new	8	15	16	9	11	7	19	6	8	14
ATTATCTAGTGTATAT	ref_6063_new	36	51	51	41	63	35	62	37	57	29
CTAATATTTTTGATGA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
ACGTTTCAATCCTTGT	ref_6063_new	40	58	47	36	57	35	46	26	50	36
AAGCACTGTCTTGACT	ref_6063_new	29	50	42	33	43	41	53	30	53	31
GTTTCATATGCTACTA	ref_6063_new	16	18	12	12	18	6	16	7	18	8
TGGCCAGTCCTATTAT	ref_6063_new	88	154	117	99	178	118	178	80	193	81
GTGACAGACACTTGGT	ref_6063_new	29	31	24	25	26	14	25	22	44	16
TGGCATTCCCATACTG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GACTAATGGTCAGGGG	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GCTTTTGTGAACGGAC	ref_6063_new	65	72	96	59	86	73	100	59	104	71
TCGTAAGGTTCCTTAC	ref_6063_new	31	57	37	36	48	21	49	14	55	31
ACGGGGTTTCGGCAGT	ref_6063_new	32	41	35	26	39	37	52	24	58	23
TGGTGCCCTCAATTCT	ref_6063_new	21	40	35	24	39	23	32	36	43	19
ATAGGCCTCGGAGTGT	ref_6063_new	27	27	25	25	36	28	51	24	34	19
TGTACCTAGCTTGACG	ref_6063_new	2	2	1	1	4	3	4	2	1	5
TTTGGTAGACCTTGCA	ref_6063_new	0	0	0	0	0	0	0	0	0	0
GGCTTTATCCTAACGA	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTAAATGCATTAC	alt_1522_fdr	29	19	28	42	14	25	27	30	19	23
TGCCTTCTTACAGGAG	alt_1522_fdr	42	31	57	50	21	30	26	40	19	49
GTTAATTTTCGGCCCC	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
CAGCGTGAAGAATTGT	alt_1522_fdr	13	3	12	9	6	8	6	2	2	3
TAGGACTCTCTATTGT	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTGGCTATTTTGA	alt_1522_fdr	27	14	35	26	24	27	26	26	17	25
CCTTATCCTGTAATTT	ref_1522_fdr	70	68	80	67	80	71	66	58	67	75
CGTACGCTCTAGAACA	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
GCCCACTTTGTAACCG	alt_1522_fdr	61	26	75	73	55	60	38	64	31	66
ATTCCATTAACTGTAG	alt_1522_fdr	79	45	100	76	42	67	56	69	60	66
TTTCGAGTGTACGATT	alt_1522_fdr	25	34	33	25	26	36	18	24	29	27
GGCCAGTGCCCCGAGT	alt_1522_fdr	12	7	17	17	7	21	5	7	14	24
GTGGAAGAGATGAATA	alt_1522_fdr	133	78	171	116	86	134	85	115	92	120
AATGTGTACTTTTGAT	alt_1522_fdr	54	27	69	54	40	34	51	50	41	38
TTCTCCCAATATGAAA	alt_1522_fdr	80	43	65	93	46	54	53	61	56	65
GGAACCCTTAATTTGT	ref_1522_fdr	125	152	153	149	117	143	124	139	102	121
GACCCATGGTGCACAC	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
ACAAAACTTTGCAACA	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTGTTCGACCACG	alt_1522_fdr	43	31	52	53	44	48	47	42	32	43
AACTATAAGGTGGAGG	ref_1522_fdr	239	171	294	239	149	236	181	235	180	186
TAATCTAGCACCATAG	alt_1522_fdr	42	24	37	44	22	32	32	32	21	24
TACGCTCTTTGTTAGG	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAGTGGAACAGGC	alt_1522_fdr	77	40	92	97	54	73	61	76	74	83
GCGTCCCCTCCACGGC	alt_1522_fdr	26	15	24	17	24	16	19	14	27	19
TTAGTGGGGTTGCTCT	alt_1522_fdr	9	7	25	5	5	16	7	20	9	10
CCTCGAATGGCAAGCG	alt_1522_fdr	24	38	34	45	22	42	25	35	42	33
CACCCTCTCGGCTAAC	alt_1522_fdr	27	11	47	32	18	26	20	38	21	44
CTCTAGCAATCCGCGT	alt_1522_fdr	3	5	10	10	18	5	14	14	11	8
ATTCATTACGTAATGC	alt_1522_fdr	15	5	21	16	5	12	7	13	9	20
CAGTTTTTTTACACTG	alt_1522_fdr	17	17	34	24	12	9	9	15	10	14
TATTTTTACCCCTGTA	alt_1522_fdr	99	71	101	117	78	100	81	106	71	93
GGAGCAGATAGCTTCA	alt_1522_fdr	56	48	56	71	34	68	54	54	36	52
CTTATCTTCTAATCGA	alt_1522_fdr	41	28	53	36	20	34	28	38	20	49
CTACACATCGAAGGTT	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCTACGCATTAAT	alt_1522_fdr	50	31	68	41	21	45	33	54	32	39
GGCGCTGTAGAATTTT	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
GCATATCTACTGTCCA	alt_1522_fdr	88	52	79	71	37	45	43	74	54	78
CCAATGGTAAGGAAGT	alt_1522_fdr	28	18	55	42	27	32	34	35	33	44
GGAGATGGTCTGTTGT	alt_1522_fdr	42	23	38	27	31	25	20	36	27	27
GTAAACCATAAGGTGT	ref_1522_fdr	82	79	97	85	71	79	85	68	100	77
TTTTATTCCGCCTACA	alt_1522_fdr	59	49	83	75	55	61	63	59	51	70
GCATTATGTCTGCTGA	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
ACACTCTTTGTGCCTG	alt_1522_fdr	2	21	6	3	31	2	27	4	34	5
GCGTACTGATGTCCAC	alt_1522_fdr	20	18	11	15	18	16	11	11	8	15
GTGGCCCTCACGTATC	alt_1522_fdr	37	20	44	20	27	25	21	21	28	35
CTCAGCTATATTGTGC	alt_1522_fdr	65	56	77	64	57	65	64	58	72	74
TTACATAAATCGTGTG	alt_1522_fdr	14	9	18	23	14	12	11	7	13	7
CCAGTCACCACATTAG	ref_1522_fdr	97	137	154	141	179	92	177	117	141	118
ATGTTGCTTCCCCCTA	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
ACCGAGGGCGTGGGTG	ref_1522_fdr	109	66	113	112	71	86	72	90	89	89
TCCCGTGGTGTTTGCT	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
CTTAAGTAGATTTATT	alt_1522_fdr	60	27	84	65	26	61	45	57	53	56
CTTTCTCAAGAGGGAA	alt_1522_fdr	49	30	70	64	29	45	31	44	32	41
GGCCCCGCCTCTCTTC	alt_1522_fdr	116	90	94	98	83	86	90	89	79	59
TCTAAAGGGACCGATT	alt_1522_fdr	14	15	21	15	9	16	12	13	14	18
AGGATTTCCGTCCGGA	alt_1522_fdr	42	28	56	48	27	39	23	35	32	42
ATCGTGGTGCTTCTCT	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
TCATTTCCATTCTATC	alt_1522_fdr	2	1	7	4	1	3	3	1	5	5
TCTTCTGTTATGGCTT	ref_1522_fdr	38	44	69	42	53	43	36	34	46	52
AAGTAGATCTCCTCCC	alt_1522_fdr	17	6	17	16	17	16	11	19	9	8
GCTCGCTTGTACGGGA	alt_1522_fdr	0	0	0	0	0	0	0	0	0	0
GGGCGGACACGTGTTC	ref_1522_fdr	13	10	14	6	10	13	12	8	11	8
TTCCGTATCCCTAACG	alt_1522_fdr	34	24	48	39	14	38	29	34	23	31
TATAGCATCAGCGGTC	alt_1522_fdr	163	116	194	178	99	151	134	180	142	166
GGCCGATAATCTCGTA	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTTTCAGGTGGCT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTCTTCATTCTA	alt_1841_fdr	4	8	7	5	9	4	7	4	3	7
TGTTCGCATTTCTTTG	alt_1841_fdr	11	3	23	15	14	8	11	8	4	8
TCAGTTACATGACCAC	alt_1841_fdr	8	3	9	11	6	8	3	6	8	6
TGTCGTTTAACTTGCC	alt_1841_fdr	22	26	29	32	21	17	23	34	17	20
GATGGATTTTGGTAGC	alt_1841_fdr	195	133	233	175	124	217	165	167	155	140
GTAGAAAACCCAACTG	alt_1841_fdr	19	13	26	14	26	17	18	14	13	22
TAGGGTGTTTAACCCC	alt_1841_fdr	24	15	37	32	22	32	29	21	28	21
CGTTTTGCATATCAGT	alt_1841_fdr	6	14	13	15	6	14	9	10	13	5
CCATCCTGCTACTATT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTTGATCACGGG	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
ATGGAGTTGGAAATGC	alt_1841_fdr	62	29	50	44	30	31	29	49	37	48
TGAATGGTTTGTGAGC	alt_1841_fdr	86	69	120	95	93	90	78	104	83	77
TGATATAAGATGGTCC	alt_1841_fdr	117	99	126	137	95	133	95	120	112	104
GATTAAGTGTTCGCTA	alt_1841_fdr	43	20	31	42	26	36	24	34	39	38
GCCTGGGCAGTGTATG	alt_1841_fdr	4	3	5	3	9	1	5	6	4	6
GGGTCAATAGGATTTG	alt_1841_fdr	33	20	34	24	20	25	7	22	18	20
TTTTTCTAGAACAGTT	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CTGTGCTTACAATTCG	alt_1841_fdr	96	98	115	112	73	92	94	102	114	94
AGAATGACGGCGGTAC	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTAGCCCAACGAA	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
TATTCAGCTGCATATT	alt_1841_fdr	0	0	4	2	0	2	1	1	1	2
ATAGGCCCGGTCTTAC	alt_1841_fdr	58	49	86	80	55	73	49	72	58	75
GAAACTCGGCCCTACA	alt_1841_fdr	160	126	187	193	117	149	127	146	139	140
TTGCGGATCGACCCAC	alt_1841_fdr	40	39	39	31	23	39	21	34	29	35
TCTTCGGTCCAGTTGT	alt_1841_fdr	17	21	27	28	19	13	16	21	18	19
ATCAATTTGGCCGGAA	alt_1841_fdr	39	40	65	55	29	48	52	34	37	56
AACCGCTCTATACAGG	alt_1841_fdr	39	45	65	39	66	31	56	50	51	35
TCGGTTCCTGGCCCTT	alt_1841_fdr	51	58	42	45	62	29	75	30	81	41
GGGTCGGGTTTTTCAT	alt_1841_fdr	8	2	4	4	2	5	2	2	0	4
TGCTGGGCTTGAAGAC	alt_1841_fdr	22	37	41	34	28	26	24	31	26	30
CGAGTTGCCCAACGAT	alt_1841_fdr	16	18	23	26	12	19	7	15	13	27
GTGTGCGGCTGGGAAA	alt_1841_fdr	20	18	22	41	17	27	28	28	14	20
CGTAATGTTTTTTGCA	alt_1841_fdr	30	26	46	26	28	29	20	25	49	21
CTTACCGTTTGCGCTA	alt_1841_fdr	156	180	184	176	207	130	232	144	207	151
TTTGATCGCGTAAGGG	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTGTCGTATTTCT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCGTTGTTGCCA	alt_1841_fdr	93	60	101	101	57	95	72	74	68	58
GACTGTCAAGTGGGCG	alt_1841_fdr	168	138	189	149	136	154	161	136	163	134
GAATACAACTCTGCTT	alt_1841_fdr	23	30	44	29	19	26	27	29	26	26
CTTCTATTTATCTCGC	alt_1841_fdr	23	49	66	42	46	32	63	35	35	34
GCCTTCGGCTCTCGAC	alt_1841_fdr	246	190	298	279	191	225	203	259	201	237
TGCGGCCTTAACCGGC	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTTTACAGGATCT	alt_1841_fdr	487	370	595	547	393	524	379	506	380	408
AGTCCGAGCTCCTACT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
TGACGGAACGTGGCCT	alt_1841_fdr	11	10	12	15	10	13	7	11	4	15
TGGAATTCTATGATCT	alt_1841_fdr	175	113	174	152	119	145	135	161	119	137
TAAGTAGTAGCTACCT	alt_1841_fdr	165	123	189	174	129	190	149	176	144	138
CATATTGGAGGAGCTT	alt_1841_fdr	64	37	73	62	49	48	36	42	52	44
TGTTGCTTTAATTCCT	alt_1841_fdr	23	19	26	27	17	22	20	21	20	27
CTGGTGAGGCACCGCT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
GCATTGTATAGCTCAC	alt_1841_fdr	12	14	18	17	7	12	11	12	6	8
CTCGGATAACCACATC	alt_1841_fdr	85	44	82	67	57	66	63	77	60	51
GAGCTAGCACAGCCTC	alt_1841_fdr	15	26	24	17	17	22	14	17	26	15
TCCGGAGGCTTCGGTG	alt_1841_fdr	13	21	27	28	32	16	22	16	17	12
TCTCTTTATATACGTC	alt_1841_fdr	33	37	37	33	32	32	23	26	30	28
CCAACCCTACCAAAAC	alt_1841_fdr	5	22	5	12	33	12	35	9	38	5
CGTTCGAGAGATTAGC	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCAGGTCCTTTGA	alt_1841_fdr	129	111	143	126	125	118	107	103	118	111
CGATCCTTTCTGGAGG	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
GACTAGGTGTTATTTG	alt_1841_fdr	38	27	27	35	32	34	37	29	25	27
AACCGGTCGAACGATG	alt_1841_fdr	0	4	4	7	10	5	5	4	8	0
TAAGTAAATCGCTCGC	alt_1841_fdr	38	28	42	46	31	46	52	22	41	37
CCTTCATTGTGCAGTA	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGTTAGCTGACTC	alt_1841_fdr	42	30	35	33	42	42	25	36	29	25
ATAGATCGGCCTTTTT	alt_1841_fdr	53	48	62	63	44	61	40	49	53	47
AGTGGGCAGCTCCTTG	alt_1841_fdr	9	1	4	6	4	3	7	2	3	3
GACCGTGACTACTTCT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
TCTGATGAGGGAGGCC	alt_1841_fdr	59	33	65	50	30	49	31	37	32	53
AACTTCTCACGTTAAG	alt_1841_fdr	189	142	209	223	170	169	130	198	148	164
GTGCGCCTCGCAGTTC	alt_1841_fdr	10	22	27	19	12	24	15	18	18	11
CCTTCGATCACAATCA	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
ATAACGCTGCTGCGTC	alt_1841_fdr	66	64	97	65	59	75	69	62	62	43
TACTCATCTACCCGCA	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTCTATCTGGACC	alt_1841_fdr	15	11	17	15	17	12	14	6	13	6
TTTCTACTTCCTCCCA	alt_1841_fdr	105	92	118	110	91	89	105	80	68	95
AGAAAGTCGTCGCAAA	alt_1841_fdr	76	34	94	55	42	71	38	64	60	62
AACGTGGGTGTCTAGC	alt_1841_fdr	59	54	65	53	48	56	32	51	52	55
ATGTTAACCTCCCGTG	alt_1841_fdr	62	64	61	55	58	56	45	46	63	56
GGTAGAGTGTAGCTCC	alt_1841_fdr	66	50	75	73	46	85	51	72	65	69
CTGCCTTGGCAAGCCT	alt_1841_fdr	5	7	6	5	8	5	0	4	5	6
TCATATATCCATGATT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
CTTGATCTCTCCCATG	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCTTGAGAAGCT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGGGTTCATTATA	alt_1841_fdr	5	0	2	2	5	7	5	3	1	2
GATCGCATCATTTAAG	alt_1841_fdr	58	42	65	65	36	61	36	57	45	40
TACATAGAACAGTTGA	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
GATGCATCTCTTGCGT	alt_1841_fdr	47	46	92	77	46	52	46	47	58	52
TGTTTCGCCGCTTCGC	alt_1841_fdr	21	14	17	23	13	21	18	18	15	13
TCTTGCGTTTTACTTT	alt_1841_fdr	8	5	11	9	2	11	6	5	8	0
TCTACCCTGCTGTCTA	alt_1841_fdr	33	21	42	39	41	40	27	27	34	27
ATACCGTCTACAGGTC	alt_1841_fdr	85	70	111	68	84	76	94	66	81	56
TGCATCTTGGCCGACC	alt_1841_fdr	67	45	68	52	37	58	34	73	38	42
AGGTGAGATCCTTTAC	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
AATCCAGGTCCTTTGA	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGTGGAAGAAACT	alt_1841_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCTAATTAATGAT	alt_1841_fdr	80	69	96	71	65	69	66	64	82	80
TTTACTGTGGTCCGAT	alt_1841_fdr	180	186	240	229	147	193	174	206	167	184
CCAACGTATCTTGCAA	alt_1841_fdr	80	93	92	70	76	79	92	68	101	70
GCCTGTTCCGAGGTAA	alt_1841_fdr	116	109	116	129	113	120	91	113	113	137
CTGTCGCTTCGTATAT	alt_1841_fdr	27	23	26	25	20	28	33	30	16	25
CGCCTAACCACGTTTG	alt_1841_fdr	11	10	7	13	3	6	9	7	11	6
AGTATCCTACCTGCCA	alt_6113_new	0	0	0	0	0	0	0	0	0	0
AGCCTCGCGTGACTGC	alt_6113_new	38	52	50	46	66	34	63	33	75	42
GTCAGACTGGTGAACT	alt_6113_new	11	13	11	6	13	10	17	14	15	8
GCTGATGAATGCCCTC	alt_6113_new	9	16	9	10	15	14	8	5	12	9
TAGCGATGAACCGGCC	alt_6113_new	3	4	6	8	6	9	8	11	4	12
CCAACCAAGGTCCACG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
AAGATTGTTTACAATG	alt_6113_new	27	49	44	36	34	35	50	26	40	25
CGGTAAGGCGGTTACA	alt_6113_new	11	13	10	22	11	8	19	7	16	4
TTTGAGGAGGATCAGG	alt_6113_new	1	4	7	3	7	4	2	4	3	2
CCGCATATCACCTAGG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TGTTCTAGTCCTAAGG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
ATGCTTGAATACAAGT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TTATAGAGGCATTTTG	alt_6113_new	10	13	25	21	30	20	17	16	35	18
GTGACACATGCGCCCC	alt_6113_new	53	47	58	41	48	55	36	51	54	49
TTGTTCGCACCCACTA	alt_6113_new	14	11	18	14	15	12	9	8	19	15
CGCCCCTTGCATATAT	alt_6113_new	4	5	5	5	8	3	6	1	3	2
GCCCTATCTCGTTTGC	alt_6113_new	6	11	12	5	12	11	10	13	18	7
CCTCCCCCGTTAGTTG	alt_6113_new	13	8	9	7	20	10	19	11	17	10
CTGCCCCCTTGTGTCA	alt_6113_new	94	119	100	75	92	70	129	75	110	73
TTTCTGGCAAATTTGT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TGGACAAGACTCATGT	alt_6113_new	3	13	15	8	11	6	13	6	17	6
TAATGCAACCCTGTTT	alt_6113_new	60	70	83	60	74	55	96	47	75	45
GTTATATATGAGCGTT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TCGCGCTTCAACTGTA	alt_6113_new	58	72	96	73	85	63	80	57	90	73
TGACGGGGCCAATGCC	alt_6113_new	0	0	0	0	0	0	0	0	0	0
GGGTTTCTCCGAGCAC	alt_6113_new	3	3	7	6	5	2	5	11	7	4
GTTAACTTGCTCACAC	alt_6113_new	9	6	12	7	8	5	10	12	12	14
TACCCCATCGTGTTAC	alt_6113_new	27	54	37	24	38	27	58	30	46	29
TAGTGTTACGAGGGCA	alt_6113_new	0	0	0	0	0	0	0	0	0	0
AGTTAACCCCCCGCCA	alt_6113_new	0	0	0	0	0	0	0	0	0	0
CCTGTCTTTACTTGCA	alt_6113_new	41	115	48	47	100	33	103	34	84	29
TCCATAAAGTCTATGC	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TCACTATTGCACCAGG	alt_6113_new	5	2	4	0	9	5	10	3	7	3
TGCAATTTAACCTCTG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
GTTACGGGTCGTTGTC	alt_6113_new	18	33	23	23	39	34	39	18	35	21
TCGTGTCTAGGCTCCA	alt_6113_new	1	2	4	1	1	0	4	0	1	0
ACTGTATGGATTCACT	alt_6113_new	28	34	23	28	44	20	37	24	24	20
ACTGTGCTATCCCCCT	alt_6113_new	44	60	71	55	57	68	48	48	68	50
CTGAGATTTGAGCACC	alt_6113_new	36	48	40	45	50	38	45	32	50	32
CATTTGCGCCCCCTCG	alt_6113_new	64	78	58	56	67	49	59	63	80	47
CGACTGAACAGCCTGT	alt_6113_new	8	7	9	12	21	10	15	12	22	13
ACGATGGGTCAACTAT	alt_6113_new	6	4	6	9	10	5	8	8	5	4
ATATCGTTCGTACTTG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
CAAATCGTTCCGCGGT	alt_6113_new	30	46	42	48	45	47	62	27	56	39
GAGGCTGTGCGGTTCG	alt_6113_new	19	31	21	23	36	14	23	31	43	28
CCTCTTACCTGACCAG	alt_6113_new	8	6	8	3	21	11	13	5	14	6
TGCTTACTGCACTTGC	alt_6113_new	0	0	0	0	0	0	0	0	0	0
GTCGGGGAGGATTGAG	alt_6113_new	7	7	10	8	4	7	9	13	10	4
ACTGATTGCCAAGTAC	alt_6113_new	8	20	11	8	19	14	10	10	11	14
GTATGCCGTAGATATT	alt_6113_new	58	71	82	72	52	84	67	56	79	54
CTTCGTAATGTGAGCT	alt_6113_new	7	17	16	8	11	17	10	4	14	17
ATGGTTAGAGAGGTAC	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TTTAGACACTTACATT	alt_6113_new	20	11	14	12	17	19	16	10	24	8
GGCGTTGAATCTTATC	alt_6113_new	77	63	113	75	73	77	86	91	80	75
CGTTCAGTGAGTGCTC	alt_6113_new	38	58	42	40	65	43	57	37	38	40
TGGGCTCCCTCGAGTC	alt_6113_new	1	5	5	4	9	5	9	7	4	1
GCTTGTCCTGCATACT	alt_6113_new	32	35	38	27	33	27	35	21	56	29
TCCGATTTTGTTTGAT	alt_6113_new	60	79	69	65	59	63	74	55	80	51
CTCAGAATTGGTTATA	alt_6113_new	21	29	28	15	20	6	27	16	12	16
TTCCGGGGTGACTTTT	alt_6113_new	30	35	21	24	36	35	35	29	38	15
ACCAAGCCTCAGATAT	alt_6113_new	14	31	29	14	17	13	19	17	22	9
CGGTTCCGCCCTCATC	alt_6113_new	8	19	17	8	16	11	10	9	24	12
GGAACTGATCCAATTG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
ACTGTAACGAAGGGGG	alt_6113_new	27	35	33	27	39	32	33	22	24	22
CCATTGGCTCAATGCT	alt_6113_new	4	8	3	9	9	4	4	6	9	2
AAGGATATCGCTTATG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
GCCTCCTAAGATGAAC	alt_6113_new	7	3	6	2	6	3	7	4	3	4
CAATAGCCCTCCGGTA	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TTCCTCTCCATTAGAC	alt_6113_new	60	51	59	37	61	59	54	31	81	35
TACCTACGGAGTCTCT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
GACCCAGCTAGCCGTT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TTTGTATCGAACGAAG	alt_6113_new	0	0	0	0	0	0	0	0	0	0
GTAGCACCGTAACGTG	alt_6113_new	11	19	16	7	22	8	14	13	17	8
ACTGTTATCAAACGTA	alt_6113_new	17	31	35	22	21	16	40	17	36	24
TTGTGTTGCTCCTCAA	alt_6113_new	4	4	11	5	1	2	3	3	4	2
GTGGAGTTCTACTGGG	alt_6113_new	48	44	45	39	62	38	68	34	61	35
CGCCCGTCGTAGTGGA	alt_6113_new	32	49	37	46	38	24	59	38	49	21
GCACATGCAACCGTCT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TCCTGGATTGGTGAGT	alt_6113_new	21	16	15	10	25	23	19	15	23	10
AGCCGATGCCCCGAAT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TGATGCCCCATGTCAA	alt_6113_new	0	0	0	0	0	0	0	0	0	0
CCTCACCCGTACAGTT	alt_6113_new	3	13	10	4	13	4	9	4	11	3
GCTTTGTGAAAAAGAC	alt_6113_new	14	8	12	9	10	3	16	11	7	12
AACGTCCTCGCAATTT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TGCTGCTCGCCGTTGT	alt_6113_new	0	0	0	0	0	0	0	0	0	0
TACATCGGTTATCTCC	alt_6113_new	0	0	0	0	0	0	0	0	0	0
CATGGTGTTGCATCTG	alt_6113_new	19	27	20	20	30	19	22	15	19	16
AAACTCGAACCGGTTT	alt_6113_new	13	4	5	9	5	5	7	12	16	7
CCATCTTTGAGGCAAG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GTCGGGTGACGTTCGG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
ATAAGTCTTTTGGTTT	ref_5316_RC	22	16	19	11	23	8	27	19	26	10
TTCTTTACCTCTTATC	ref_5316_RC	11	10	15	11	9	7	20	17	11	11
TTCGTTTCTTCGAAGA	ref_5316_RC	13	14	7	12	20	6	15	14	13	7
GGAAGGCGTCTTTTCC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TCTCGGCAGTCTAGAC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CGCTAGCTTTTAGCCC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
AACTCCTCCCTGGGCG	ref_5316_RC	47	73	58	54	67	43	81	65	68	56
ACACCTACCCCGCCGT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
ATGCCCAGTTCGAGTC	alt_5316_RC	45	51	45	38	60	51	50	45	53	40
TCAGTTAACAGTGACT	ref_5316_RC	27	45	43	38	45	25	43	28	46	23
GGTCAGACCATATCTA	ref_5316_RC	30	32	36	27	30	14	37	24	37	28
CCTCTATAAATGTATA	ref_5316_RC	72	113	100	83	118	64	115	78	134	68
TTGCCTGGGTGTTAGT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
AACGGCTCACGTCTCC	ref_5316_RC	104	117	107	98	80	74	112	79	112	70
ACGGCTTTCGGATACC	ref_5316_RC	27	33	38	23	28	35	34	30	39	25
ATCGTGTCTTCTTTCG	alt_5316_RC	61	61	69	76	55	70	58	59	67	73
TTTTTGCAGTGCTGAT	ref_5316_RC	31	30	32	31	34	23	27	31	23	18
AGACCATAACAGTCTG	ref_5316_RC	43	36	40	32	39	28	43	27	30	24
TGCCTTAACCTGTATG	ref_5316_RC	30	49	41	33	58	42	38	23	47	41
TCTAAATCCGAAACCA	ref_5316_RC	61	59	76	58	61	61	59	46	55	42
GGTGAATTGAGGGGCG	ref_5316_RC	50	41	50	46	44	44	36	43	55	30
ATGACTTAGAGATGCG	ref_5316_RC	32	43	37	26	44	25	40	37	48	30
ATGTGCCGACACGTCT	ref_5316_RC	28	39	33	32	33	31	26	32	48	24
CATCACTCCCAATTGA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TGGAGTTTTGCTTGGC	ref_5316_RC	15	18	16	14	11	18	11	10	7	15
AAAGAAGTATTCCTGA	ref_5316_RC	23	32	31	29	30	33	26	30	22	23
CACCCTCGTATACTCA	ref_5316_RC	3	6	3	2	0	5	2	1	7	4
ATGTGCCTTTAGTTAT	ref_5316_RC	0	7	5	5	8	2	4	6	7	4
TTTCACCGCTGGAACT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CTGGTCTTTGGCAGGT	ref_5316_RC	19	21	26	12	32	17	26	16	33	13
TACTCTTATTTAGCGG	ref_5316_RC	101	124	125	77	102	95	99	75	117	102
GATCATACAGTAGTGA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
ATAAGGTTATACGTCG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TGCGTTGGCTTAGGGG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TTTCGGCTTGTTAGTG	ref_5316_RC	4	10	6	11	9	6	6	3	6	3
CGCCTGTTTTCGTCCT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CGTAGCAGTCGATCCG	ref_5316_RC	2	3	4	2	4	2	4	3	7	2
CCGACATTAGCTATGT	ref_5316_RC	220	217	245	206	226	231	223	179	245	214
TGTCGGAATTCCAGAT	alt_5316_RC	215	205	292	200	208	221	222	239	197	202
TTGCGGCGGCCCTACG	ref_5316_RC	71	64	71	59	55	59	87	61	73	46
GACTATTTGTGTTACC	ref_5316_RC	115	146	133	111	176	92	153	115	173	117
AGTTGGCGGATAGGAG	ref_5316_RC	7	11	12	11	8	12	17	17	12	12
GCCCATAGCGTACCAT	ref_5316_RC	36	35	39	26	33	33	41	31	33	34
CCGTCCGGTTATCGAT	alt_5316_RC	61	62	63	42	55	45	80	48	92	53
AATGGGCTCCTGGTTC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
ATCAAGAGATCGTCCG	ref_5316_RC	13	18	14	15	28	15	20	12	17	10
TTCCTAGCTTCGAGAA	ref_5316_RC	1	5	2	2	12	1	4	0	5	2
GACTTCCTTCACGGGA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
ATAATAAATGACTCGT	ref_5316_RC	15	27	13	15	15	22	15	13	20	22
TAAGGATGAGTGGTCT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GAAAGTGGTTAAATCC	ref_5316_RC	102	109	145	95	100	110	122	116	117	104
GGTATTGTGTCGCTCA	alt_5316_RC	116	135	109	111	135	109	155	103	137	100
GACTTCCCCCTCCTTC	alt_5316_RC	104	149	127	107	100	90	144	87	160	102
TTTTATGTATAGGCAG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TATGTGGGTCTCATTT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GGTTCCAAGTTTTCAG	ref_5316_RC	74	98	86	70	107	64	98	74	99	78
AGTACGAGCATGTGTA	ref_5316_RC	1	1	2	0	3	2	1	0	1	0
GACACACGCTAGATTT	ref_5316_RC	34	24	43	23	28	35	21	24	24	27
CAGTATTTTACATTGC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GTGAACTGGAAGCAGT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGCACGGTTAGC	ref_5316_RC	23	25	26	26	40	16	27	18	38	28
AGCCGGACCTTTGTGC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CCATTTGGTGATATAT	ref_5316_RC	15	37	16	25	33	23	27	11	21	16
CGGCAAAGAAATTCTG	ref_5316_RC	25	43	34	36	51	24	36	29	54	36
ATACGTATTGTGATCG	ref_5316_RC	48	51	42	33	42	39	55	46	36	36
TCCGGAGACAATACAC	ref_5316_RC	82	124	129	72	128	110	99	98	110	90
GTCTATATTTACTTCT	ref_5316_RC	104	98	114	96	102	92	92	84	116	77
GTCAAATTCCATCGAC	ref_5316_RC	55	47	64	57	56	54	52	38	57	48
ACAGATCTTCTGCCCT	ref_5316_RC	33	31	22	35	38	13	31	20	34	17
GGTCATCCGGTTACTC	ref_5316_RC	16	22	23	28	26	28	29	17	46	30
AGCCGCGTTAAGATAC	alt_5316_RC	91	106	119	108	132	62	128	81	149	74
GTGAGCTGAGGATTCA	ref_5316_RC	97	122	165	87	124	111	102	88	108	119
TTGCAGAAACAATGCC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TCAATCTCCTGCTCGG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CATCCAAAGTCTCGGG	ref_5316_RC	36	22	24	23	29	15	32	26	40	22
GCGTCGGTAGCATGAC	ref_5316_RC	66	85	93	77	67	78	77	60	102	67
TGGTCTGGTATCTTTT	ref_5316_RC	246	206	312	218	241	209	231	240	247	202
GTTGGGATGAGCGCGT	ref_5316_RC	12	8	14	4	10	8	17	8	15	8
TTCGTTAACTGTGCCC	ref_5316_RC	7	24	10	13	22	5	29	4	24	7
GTTAATGTAATTACAG	ref_5316_RC	3	7	11	11	6	15	9	7	23	5
CGCCTTCTCAGACGCT	ref_5316_RC	85	102	87	69	72	66	105	73	85	66
TAGGGATAGGGTAAGA	ref_5316_RC	13	9	14	16	11	11	16	13	13	8
AGGGCTTCATGATCCT	ref_5316_RC	27	32	19	24	29	19	37	35	38	15
AGAGGCCACAGCGACG	ref_5316_RC	38	26	32	43	47	37	44	29	52	36
TCACATCTTACTCGCG	ref_5316_RC	0	1	1	4	1	0	1	0	2	5
TTAGATAGTATGCTGT	ref_5316_RC	27	41	51	25	59	33	53	39	51	17
TGCCTCGGTCAGGTCT	ref_5316_RC	17	25	26	30	23	16	18	15	31	21
TACTTTACCCTTGTAA	ref_5316_RC	25	32	41	25	50	25	33	28	38	33
CGCCCTATACGCTGGA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TTTCACCGCTGGTTCT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GCTTCGGTTCGGTTCA	ref_5316_RC	15	15	8	17	19	15	27	12	16	13
AAAGTCTGCACGCTTG	ref_5316_RC	164	197	211	149	193	162	215	127	248	145
TGGTACTCTGGGGCCA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GTGTTGCCTTTCTACT	ref_5316_RC	70	58	63	69	57	67	75	64	75	55
CCGATGTTGACAACTT	ref_5316_RC	86	178	90	94	145	80	151	83	140	67
TGTGTCTGGCTTTCGA	ref_5316_RC	22	42	50	28	39	27	38	23	46	35
TGATGGTTTGGAAGGC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CATTCTCGCATTGGCA	ref_5316_RC	2	5	5	2	3	5	3	0	7	4
CATGCCGGCTTTTTGA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CATCGCTAATATTACC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
AGATCCAACCTTTTGA	ref_5316_RC	29	35	36	32	40	30	32	29	43	19
CCAATCAGTCAGCCCG	ref_5316_RC	4	5	6	0	13	2	10	5	4	6
TCATACGTTCGGATTT	ref_5316_RC	23	17	23	23	34	25	32	19	20	26
TTTATTTGCCATCTCG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GCGATTACCCCGTGAT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TTAGTTGTGTTATTGC	ref_5316_RC	45	60	77	55	60	53	83	39	67	50
GATATATTCAGGGGTC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
ATAGGGCGCCCTGTAA	ref_5316_RC	87	117	133	96	102	101	112	101	146	103
ACGCTAGCTTGCGCTG	alt_5316_RC	86	112	110	79	125	90	112	90	123	67
GTTGTCAGTTAATCGG	ref_5316_RC	16	23	30	19	21	21	27	21	29	26
GAGGTCCTAAGTAGAC	ref_5316_RC	23	22	26	15	37	20	15	20	20	18
CTTATCATCGGCAGCA	ref_5316_RC	25	16	11	23	19	8	17	14	16	22
TTCCCCTAGCATCTAT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
TGCTGCTCTTGTGGTT	ref_5316_RC	16	43	24	19	26	18	33	18	33	21
CCGTTAGCATTCACCC	ref_5316_RC	44	37	49	41	40	34	62	40	55	35
TGCGCCTAGCTATTCG	ref_5316_RC	35	57	32	28	48	31	69	26	71	26
TTTTTGTAGTGCTGAT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CCAATGTATGCTGTAT	ref_5316_RC	23	12	18	19	20	14	16	17	19	14
CAGCGCCTCGCTTCTT	ref_5316_RC	7	14	12	10	15	8	14	9	15	9
GAACGCGCCGCTTTGT	ref_5316_RC	1	1	2	2	4	2	6	3	4	5
GAAATTTGCCATTCAC	ref_5316_RC	71	50	56	44	44	36	51	51	53	39
TGGCGTCAAGTTATCG	ref_5316_RC	123	76	124	81	75	93	83	100	109	100
ACTACATCTGCTTGCA	alt_5316_RC	75	83	92	91	122	82	129	71	129	81
ACACGGAGCGCGACTC	alt_5316_RC	16	32	39	16	26	21	36	21	32	20
GGCTGGCTCTGAACTC	ref_5316_RC	2	8	6	12	6	4	5	5	13	6
TCAGCATTTTTCGAGC	ref_5316_RC	33	28	32	19	33	36	39	23	34	21
TCTGTGTGGTTCAAAC	ref_5316_RC	7	13	11	3	7	1	7	5	10	1
ATTGTAGGTTGTGTAA	ref_5316_RC	111	149	145	136	155	100	155	122	186	129
AGATGTTGCCGTATGT	ref_5316_RC	47	70	85	51	68	55	64	56	63	62
GGACTAGCTTTCTCTC	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CATACTTAATTTGGGG	ref_5316_RC	5	4	12	7	9	8	4	7	9	4
ATCTCTGTATGTAACT	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GTTGTAGCCTGGATAT	ref_5316_RC	4	9	11	5	8	7	9	6	18	6
AATAACTTTTTACCCG	ref_5316_RC	30	33	28	22	33	18	38	19	47	23
ACTGTTTGCGAGTCAT	ref_5316_RC	10	10	14	2	4	11	12	7	8	5
TCTAGGAATCGTAATA	ref_5316_RC	5	8	11	9	10	12	20	13	16	15
TGCAATGTGCACATAG	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
CATCAGATTCAGGAAT	ref_5316_RC	38	63	52	41	68	45	50	39	69	45
TATTCATGTGGGCTTC	ref_5316_RC	4	4	4	3	6	4	7	7	7	4
GTTTTCCTCGCCTAGA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GTCCATCTTAGTATCG	ref_5316_RC	35	35	39	18	51	27	52	34	39	36
TGTGAAGTTACCTATG	ref_5316_RC	3	13	16	9	13	8	6	9	9	4
GTTTCCTCTGGGCGTA	ref_5316_RC	5	14	7	9	10	8	13	3	18	9
GCTGGCTGTAGGGGCA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GGCGGTTCGTTCGAAC	ref_5316_RC	39	44	68	37	66	38	49	33	55	34
GTTTCTCTCGAATGCG	ref_5316_RC	26	24	21	20	23	25	21	19	21	9
GAGGGCTGCCTGCACC	ref_5316_RC	12	16	25	15	26	14	20	12	17	13
AAAAGGTATGCTTCGA	ref_5316_RC	0	0	0	0	0	0	0	0	0	0
GATGTGCCGTTTTAGA	ref_5316_RC	31	44	28	39	43	37	35	29	42	25
CTCCGGAATCCGCGTT	ref_5316_RC	3	3	4	5	4	5	6	7	2	6
TCTTTATGGCGTATTC	ref_5761_new	143	169	156	153	182	103	171	111	161	105
AATCCGCGTTCCCTAA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TACCCGCGCTTTTAGT	ref_5761_new	19	26	28	18	31	23	35	30	30	19
CCCTGTCGTTGCAACG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CTTCTTTTAACATATT	ref_5761_new	21	20	14	11	25	15	26	18	23	19
ACTACATGCTCCGTTT	ref_5761_new	30	33	25	37	31	31	41	22	64	23
TCGAAGCCAGCGACCC	ref_5761_new	15	19	27	14	25	16	20	12	20	12
TGTCTTGGTTGGTCAC	ref_5761_new	27	27	24	14	33	18	40	15	32	19
ATTGAGGGCCCCTCAT	ref_5761_new	19	37	24	23	27	25	29	22	34	11
CTGCGTCAGTGAGATC	ref_5761_new	15	40	39	16	22	17	30	22	49	20
CCGAATCGGGTCCACG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GTCCGTAGCCTTACGG	ref_5761_new	85	121	104	76	130	60	127	78	118	60
TCATATCCGTTTGGGA	ref_5761_new	28	65	33	21	34	23	38	36	48	22
CTATCCTGCATTGCGT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
ATGCTCATGAATGATG	ref_5761_new	2	0	0	0	1	0	1	0	0	0
CGCGGTTCCTTACTAA	ref_5761_new	3	4	7	3	9	1	6	4	6	5
CCTTCCACACGGAATT	ref_5761_new	13	26	17	16	17	10	16	16	23	10
GATTTCTTGATGTGAC	ref_5761_new	14	14	10	9	15	11	11	8	15	15
CCAGCGCCGTTCCCAG	ref_5761_new	19	93	20	31	72	22	68	18	91	19
CGTTATTTGGTCAACC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TGTAATTTAAAGACGC	ref_5761_new	16	24	16	14	22	14	24	14	24	10
TCGATCGACATTGTAG	ref_5761_new	10	21	14	14	10	11	16	7	12	9
AGCTGTAGTGAATCCT	ref_5761_new	41	56	51	43	50	32	63	40	62	41
ATACTCACTCCGATAT	ref_5761_new	1	4	2	2	2	2	4	0	7	0
GCTCCACTCGGGGAGT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GATTTGGATAAGGGTC	ref_5761_new	50	46	48	32	57	39	74	30	66	34
AAAGGTCTTTGATTTG	ref_5761_new	75	117	83	73	130	73	107	65	127	64
CATTCCGTTCGCCAGC	ref_5761_new	5	7	6	5	9	10	9	10	15	12
CGTTATTGTCTTCTAA	ref_5761_new	1	0	0	0	0	0	1	0	0	0
ATAAATTTTCATGATC	ref_5761_new	3	0	3	5	3	1	1	5	1	0
ATTCTCAGTTTATTAG	ref_5761_new	72	122	73	82	109	83	134	82	123	67
GTAGGCCTCATAAACT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TACCGATCGTCGCGTT	ref_5761_new	30	43	32	24	39	29	51	31	46	26
AGACATGGTCTATAGG	ref_5761_new	14	18	14	4	17	6	13	7	14	4
TGCCGATTCAGGCACT	ref_5761_new	47	48	33	45	49	29	62	35	61	44
GTAATTTATAAGTTTT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CCGCGCATTGCAGACA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
ATCATTCGCTAACTTC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TACTGAATCCCCAATT	ref_5761_new	35	72	56	36	56	39	64	42	50	33
TTCTCTGTTGGGTCCA	ref_5761_new	29	36	29	41	39	27	53	23	56	26
TAGTGACCAATGTTAT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CTTAACAACAGTCTGT	ref_5761_new	19	22	18	17	27	10	24	16	31	15
AGCGAGGTTAAGGTTG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TGACCCGTCTTTATGG	ref_5761_new	15	14	13	9	12	10	9	5	16	6
CCAAAGCGAACTCCTG	ref_5761_new	48	55	50	33	53	36	56	39	73	46
TTTCGTATCCCAGCAG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GTAGTACATAATAGCC	ref_5761_new	4	8	9	10	6	5	7	9	15	8
ACCGACTTAGAGAAGT	ref_5761_new	3	2	0	0	1	0	1	1	0	1
TCTCTACTTCCACTGA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
AAGGTGCATTACCAGC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GTTCATTCTTTGAACC	ref_5761_new	10	15	17	9	22	9	20	10	14	12
AGCTTCCTTTCATGTG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CTTTCAGTGGTGTATT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CTCTGGTCTTGGCCCT	ref_5761_new	22	55	36	39	42	30	46	31	64	31
ATAAACTTTTCCATTT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TCGCGATTCCCCACTT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
ATAGTTTATTCGGGTG	ref_5761_new	13	12	9	8	8	6	11	9	14	6
AGCGCGGAAGCCATTG	ref_5761_new	12	25	22	13	10	15	22	12	24	11
TTAACTGTACGTATAC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
ATTGCTTTCGCTCACG	ref_5761_new	35	32	31	30	47	26	37	21	40	23
ATTTTTAATTTTTTTC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GCGTTGGGTCGCGCCG	ref_5761_new	54	87	73	59	88	39	89	51	76	57
TCTCGCGAATATGCAT	ref_5761_new	33	39	42	38	46	31	53	38	51	32
GGAGGTCTCGCCCGCA	ref_5761_new	21	27	28	20	49	29	39	18	31	27
CGACTCTCGGATGATT	ref_5761_new	17	9	15	5	11	11	9	6	12	8
TCATTCTCCCGTCGCT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTAAATTAGGG	ref_5761_new	16	16	18	13	8	15	19	6	13	7
TATTTGGATCCTCTTG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TCCTGCTCGCTCCCTG	ref_5761_new	27	45	25	21	41	32	53	22	41	13
CTTTTTATTAGGTGCA	ref_5761_new	4	9	5	9	6	4	4	4	3	1
AGCCGAGAGAGCCTCT	ref_5761_new	28	22	30	26	27	26	33	22	33	23
CCGTTTTCGCCAGCCC	ref_5761_new	3	7	1	0	6	9	11	5	4	0
CCTACACGTTTGGTAC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TTTGGTTGCAGGGCTA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TCGTTGGCCCAAATTT	ref_5761_new	63	97	80	76	98	54	94	75	114	51
TGTCGAAAGGTCATTT	ref_5761_new	10	7	14	10	22	9	20	14	20	8
TGCTATCCACTCAACG	ref_5761_new	73	179	103	85	174	64	182	72	183	57
ACTTTATGGCGTATTC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TTGCGGCCATCAATGG	ref_5761_new	128	165	179	136	185	110	197	115	180	139
GGAAGGGCCCTCTAAT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GCTACATACGACGACC	ref_5761_new	26	31	26	14	28	20	34	17	45	19
GTCTCAATACCGGTCA	ref_5761_new	31	85	34	44	64	25	74	19	58	23
GTTTTAAGATGGCCGG	ref_5761_new	14	15	21	12	11	22	12	24	10	19
CCGTTAACATGTGCCG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GGCACCCGCATTGTAC	ref_5761_new	4	4	8	2	6	1	1	6	8	5
CCAGGCATCTAGAACA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TTCCAGAGTCCCAAGT	ref_5761_new	3	2	3	4	14	1	4	6	7	9
GGCTTTGGTGGTACAA	ref_5761_new	12	18	11	8	27	19	27	19	21	13
CCTCACGGTAGCTTGG	ref_5761_new	3	9	6	5	18	10	11	13	9	6
ACCTGAGGAAGCGCGC	ref_5761_new	7	17	13	12	16	14	11	4	25	5
TGCAAGCTCACTTGTC	ref_5761_new	116	198	137	127	193	105	207	114	205	118
CTATCGGTCTGTGTTA	ref_5761_new	0	7	0	2	7	0	9	2	10	1
TTAAGCTGCGGGTCAT	ref_5761_new	31	51	34	48	71	29	70	31	83	43
TCTTCTAAGCGCACTC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
ATGTATATTCTGCGCG	ref_5761_new	14	32	12	16	25	15	19	14	30	16
TCCTCTCATTCTTTGT	ref_5761_new	27	35	30	16	30	32	37	16	28	22
GACTAGCATTCCTTTA	ref_5761_new	31	62	30	33	43	21	66	21	71	24
TTGACTTCTTTTTCTG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TTCACTTCCTTGGGTC	ref_5761_new	23	28	21	11	34	19	30	17	20	15
TTAGTAGGATCTAGCG	ref_5761_new	66	62	84	52	65	70	86	61	93	60
GCCCTTCCACCTGATT	ref_5761_new	4	18	9	4	14	2	12	7	16	6
CTCCGAGCGAAAGTTG	ref_5761_new	2	4	4	4	6	1	9	4	4	1
TGTAGGGAGCGTGTTC	ref_5761_new	8	10	11	8	8	10	18	11	14	2
TCTTAAAGTTGAGAAT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CAATTATCTTTCCATC	ref_5761_new	22	44	23	19	59	21	55	23	32	22
GCTGGCTCCGCACGGG	ref_5761_new	3	7	7	3	14	10	5	4	9	4
CTGAATTGCATATGTT	ref_5761_new	53	57	46	37	55	37	60	42	84	39
TCGCTTTGTTCGGCGT	ref_5761_new	21	45	29	29	43	15	34	38	39	30
CGTGGCATGTATATTC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CTTTGATGTGCGATCT	ref_5761_new	93	105	123	119	111	92	102	106	145	74
CGAATCGCCTTACTTA	ref_5761_new	13	10	15	12	20	9	15	10	22	6
GCCCATGGTTTTAATA	ref_5761_new	5	28	14	13	33	13	27	12	26	15
AACCATGTGGTAGTAG	ref_5761_new	13	26	19	27	33	15	35	20	36	15
CCTTGTGGGATTTGCA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GCCGCGAGCGCTTCCA	ref_5761_new	46	57	75	57	60	58	61	36	77	52
AGTCACTGCTAAGTTT	ref_5761_new	16	23	18	11	22	14	17	20	14	10
GCAACGATGGTCTTTG	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GGCCCGCCGATGTCAG	ref_5761_new	7	22	14	11	18	8	13	12	16	7
GCTTAATGTCCTATCA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
AATGGCCCCTAGACTT	ref_5761_new	38	42	46	61	57	40	53	44	55	39
CTCCACCATCTCATGT	ref_5761_new	16	38	13	16	30	12	29	27	40	14
ATGATGATCCGTTCTT	ref_5761_new	6	17	19	11	15	17	21	21	20	13
TACTTTGTGCTTCTAT	ref_5761_new	40	43	43	46	70	30	45	39	55	34
ATCGTACACCTGAGCT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
AGAAGGCATCTCGTGA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GGACTGGTAGTGCAAA	ref_5761_new	17	32	39	22	36	32	51	16	57	17
TTCCGGTCTGAGATAA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TTTAATGCTTAAGACT	ref_5761_new	14	21	15	8	14	6	34	6	18	6
CCCCTTGTATCAATTC	ref_5761_new	58	99	81	55	89	56	100	55	109	55
GCGATCAATTCATCCT	ref_5761_new	73	96	97	70	97	90	115	95	114	69
TAGGTGACCGGATGCC	ref_5761_new	11	57	17	10	42	14	43	15	45	10
GTCAGCCTGAACCAGG	ref_5761_new	9	20	13	6	20	9	24	13	15	5
GTACAGAGTGACCGTT	ref_5761_new	0	0	0	0	0	0	0	0	0	0
GTCTCAAACTGCCTGA	ref_5761_new	22	29	25	21	32	17	39	20	33	14
TGCCGGATGCTCGATC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CTAGGTTTTTACTGGT	ref_5761_new	2	16	9	10	16	3	10	7	10	7
GTGCGGTTCGTTGTAT	ref_5761_new	11	10	7	6	10	4	13	4	15	2
TGTAAGTTTCCATCAC	ref_5761_new	0	0	0	0	0	0	0	0	0	0
CCGCGGCACTAGCTAA	ref_5761_new	0	0	0	0	0	0	0	0	0	0
TAAGTGTCATTGCAAT	ref_4574_upstream	23	29	28	24	21	25	22	22	20	23
AGATGACGTTCCTGCG	ref_4574_upstream	4	6	6	6	0	10	3	3	5	3
GCCTTCGCCAAAAAAT	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGCTAATTACTGG	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
TTATGAACCCGGTGTC	ref_4574_upstream	3	9	16	7	18	6	6	11	8	4
AGAATCAACTTTGGTG	ref_4574_upstream	77	54	115	90	69	78	73	79	72	79
TCTATACTTTGGTGCG	ref_4574_upstream	75	59	79	82	61	62	76	71	63	76
ACTGCGTCGACACGCA	ref_4574_upstream	38	15	40	37	18	24	30	26	36	18
TCTAAAGAATTAGTCC	ref_4574_upstream	27	22	31	28	21	26	16	26	26	27
TTAGCCGGCTCTTTAT	ref_4574_upstream	17	18	22	17	13	14	19	28	13	12
CTGAACCCGTACCGTG	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
GTAATCTTATTTCTGG	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTGCGGCGGTTG	ref_4574_upstream	23	18	23	12	7	13	11	24	19	14
AATCATTAGCCCCGGC	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
ACATGGGAATAGGAAG	ref_4574_upstream	61	30	55	48	36	36	35	37	44	32
CTAGGTCCCGCCCAGG	ref_4574_upstream	58	50	81	78	75	61	60	76	51	63
GTAGGTAAGCCGTTCT	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
ATACCGGCATTCCTGG	ref_4574_upstream	20	22	32	30	12	28	19	23	21	21
GTGTTTCACCCAATAG	ref_4574_upstream	6	1	7	3	5	5	6	0	6	4
GCTTATAATGGTGCCT	ref_4574_upstream	34	28	40	36	27	36	18	30	22	28
TCCACTTATCAAATAG	ref_4574_upstream	232	219	273	263	189	226	180	187	224	207
TCAGATCGTTTACTGG	ref_4574_upstream	18	15	24	11	15	16	25	27	17	20
AGACCCTGCAATGTTA	ref_4574_upstream	48	51	63	44	34	63	38	41	60	57
CAACTTGAGTTTGAGT	ref_4574_upstream	15	6	18	9	4	9	1	12	11	8
CATCGTGCGTCGCCTC	ref_4574_upstream	27	10	29	27	26	22	22	16	17	21
GTACTATCGAGATTGT	alt_4574_upstream	195	148	234	183	146	197	167	221	155	167
TGTCCTTGGCGGCTGA	ref_4574_upstream	15	2	11	13	6	8	8	9	8	12
GTTTCACATTTCTTGT	ref_4574_upstream	109	91	151	142	76	114	84	118	101	102
GGATCAGATATGCATT	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGTGTTGTACGAA	ref_4574_upstream	88	151	93	74	147	67	180	81	177	89
CCGTAAGTCCCATTTG	ref_4574_upstream	21	18	20	20	18	29	16	17	12	30
CGCTTCCACCCGTTTT	ref_4574_upstream	4	0	4	3	4	3	0	5	1	2
ACGCACCACTATCTGT	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCAAAAGTATTAA	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCTGATGGCATGT	ref_4574_upstream	35	18	38	39	27	35	27	37	27	32
CAGCTTCTGAGTCGCT	ref_4574_upstream	2	0	4	2	3	2	2	0	1	1
GGAATTCGCCGCCAGC	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
TGGATCCGCTCTTCAC	ref_4574_upstream	18	16	20	18	17	14	6	16	10	18
GTAAATCAACGTTGTG	ref_4574_upstream	35	21	34	37	30	27	19	34	34	23
ATGGTAGCGTTCTCGT	ref_4574_upstream	25	34	47	49	38	56	46	38	39	37
GTAGTTGCCCGTCCAC	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCAGGTTCATTAC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGTTGCCCTACAG	ref_4574_upstream	21	17	22	30	21	12	25	21	13	15
CAACACATTATTGCCG	ref_4574_upstream	54	38	68	72	57	41	36	48	44	39
ATCGAGCAGGGAACGT	ref_4574_upstream	5	6	5	7	2	6	13	2	9	7
GAGTGATTAATCTATC	ref_4574_upstream	47	33	50	52	33	32	30	29	39	35
ACGTAGTTATGTTAAC	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCAGGTCCCCAGG	ref_4574_upstream	29	21	28	14	10	17	19	12	9	24
CGTGGTCCACCTATAG	ref_4574_upstream	34	33	66	41	41	38	36	57	55	55
GCAAACTGAACCTGTA	ref_4574_upstream	20	14	27	14	11	14	16	20	15	8
TCCTTGCTGTTCTAAC	ref_4574_upstream	87	65	106	96	59	78	89	83	99	72
CGAGGGGATTTCCGTG	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
CAGAGAGTGATTGACT	ref_4574_upstream	12	17	21	25	21	25	20	13	14	14
AACTGACGCTTGCCCG	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGGTACAGGTCTT	ref_4574_upstream	43	25	46	32	41	38	35	35	41	32
CTCTTGCTTTAGTGGC	ref_4574_upstream	4	14	14	11	23	14	19	10	14	11
GTAGGCGCGTTTTCTA	ref_4574_upstream	11	8	19	11	15	11	6	11	3	8
TAGCCTAAGTCTACTG	ref_4574_upstream	6	10	11	12	6	8	15	10	18	7
CTCATCGGTCTTATCG	ref_4574_upstream	42	35	55	42	31	37	33	33	31	33
TTCTTTATAGCCTCGC	ref_4574_upstream	38	22	42	32	30	32	30	37	31	40
GAGTGATGCTGCCGCG	ref_4574_upstream	58	41	60	52	36	60	45	56	65	52
AGCGCCTATTTTAATG	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCATCGCCTAAAG	ref_4574_upstream	43	33	60	55	31	32	45	62	52	42
GTTTATACTTTCCCCA	ref_4574_upstream	21	19	29	21	19	25	17	25	18	17
ATTTGCAGGGCACGCC	ref_4574_upstream	174	135	234	171	132	196	138	182	135	157
GTAATCTGAGGACCAG	ref_4574_upstream	27	15	34	32	17	24	19	27	26	29
GAGGGTTGATAGCCAC	ref_4574_upstream	157	121	196	200	135	159	156	173	136	151
GTGACGTTGATTCGGA	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
CGAAGTAGACATCTAT	alt_4574_upstream	44	112	77	60	118	61	106	48	104	47
CGAACCCTGTTCCGTG	ref_4574_upstream	30	31	24	23	15	20	19	25	21	27
CAATGGGGATACTTGA	ref_4574_upstream	330	238	373	348	226	334	255	317	274	291
AATAGATCAATTGTGT	ref_4574_upstream	15	10	18	15	14	22	12	22	20	19
AGTGTAGAGTTTCCGA	ref_4574_upstream	4	2	2	5	7	7	2	0	0	4
TGTCATTATAAATTGT	ref_4574_upstream	19	12	17	19	13	11	16	13	8	12
GACCAATACTGCGTTT	alt_4574_upstream	159	117	174	128	139	141	136	119	136	104
ACAACATTGCATCGGG	ref_4574_upstream	8	2	12	3	7	6	4	4	9	4
TCACGTAAGAACTTGT	ref_4574_upstream	117	93	155	120	96	118	76	126	99	113
TAACCTCATCTTCGGA	ref_4574_upstream	75	43	84	54	40	51	41	49	39	37
TCGGCTCTCAATGGAC	ref_4574_upstream	44	46	81	68	48	63	42	49	55	47
TTACGTATAGTTGGCG	ref_4574_upstream	6	0	2	4	1	3	3	4	4	0
TCCTTCCTGCTGTTAC	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAACTGAGCGTTG	ref_4574_upstream	18	12	25	16	11	18	11	17	13	12
AGTAGATTCTTAAACA	ref_4574_upstream	85	59	116	91	64	74	74	97	86	71
TACCGGTCTTGTCATG	ref_4574_upstream	50	43	45	46	39	37	43	36	46	39
AGCTTTTTGTGCCGTA	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
GTGATTAGCATCCATT	ref_4574_upstream	129	137	183	137	109	144	134	129	132	123
CATCCCTATGGGAACT	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGTTCAACCCCAG	ref_4574_upstream	36	26	58	39	29	54	37	31	38	37
TCATCCATTTCCCTGA	ref_4574_upstream	42	25	42	39	25	36	32	47	39	24
TAACATCTTATGTGAC	ref_4574_upstream	15	14	6	12	8	9	15	13	5	10
TTAAGAATGCATCCCC	ref_4574_upstream	4	4	16	18	6	13	3	5	5	9
CCCGGTAGCATCGTAC	ref_4574_upstream	66	66	80	91	70	59	72	82	70	60
TAATATGTCACTCGAT	ref_4574_upstream	19	15	22	24	6	17	24	9	15	20
GCAGACTTCTAGTGCT	ref_4574_upstream	15	7	19	20	14	15	11	11	12	12
CAACTCAGGCCAGGTG	ref_4574_upstream	24	11	27	26	27	19	28	14	26	18
CGAATTGAAGAGTCGG	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTCTACGTACCTG	ref_4574_upstream	4	21	5	1	13	6	8	7	22	5
GTTTAAGCGGATCGCT	ref_4574_upstream	10	8	27	15	18	19	14	19	19	16
TAGACGTTTGCGCGAT	ref_4574_upstream	23	19	29	34	20	29	24	23	18	27
GACAGTGGCCTGTTGT	ref_4574_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGATAGCCTTCCA	ref_5181_reverse	112	125	140	113	118	122	124	99	150	88
TAGGAACGCTATTTAT	ref_5181_reverse	23	27	31	24	31	27	31	31	28	22
CTGACCGAAGCGATCT	ref_5181_reverse	74	59	57	67	92	54	85	59	66	47
CTGAGTCCTTTAGAGG	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
ATTATCGTCATGGTTG	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
AATGCGGCCTAGTGAC	ref_5181_reverse	65	64	59	54	65	54	59	48	82	57
GCTAGGTTTAGTTAAG	ref_5181_reverse	27	36	44	33	44	29	47	31	47	27
AACGGTATTTCAGCAG	ref_5181_reverse	48	50	64	57	70	49	59	64	76	48
GCTCAGGTAATATGTC	ref_5181_reverse	75	125	100	95	113	96	125	89	123	67
GGATCAAATGGGTCGA	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGCATCAAGATTC	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TTTACGTTGTCTTCGG	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TTTATGTTCATTCGGC	ref_5181_reverse	25	24	33	34	35	36	37	27	36	34
CTACCATGGAGTTTTA	ref_5181_reverse	7	6	7	6	6	3	3	4	6	2
ACTCAATTTAATGTCG	ref_5181_reverse	35	46	44	39	35	36	36	20	56	29
AATGAGTCTATTATAA	ref_5181_reverse	166	206	221	176	200	169	188	162	200	161
GTATGATACCAGGTTC	ref_5181_reverse	73	119	95	71	125	79	111	51	138	58
AATGGAAGTTGCGTGT	ref_5181_reverse	110	132	148	124	149	103	164	101	164	86
AGAAGGCAGTATTGTC	ref_5181_reverse	0	0	0	0	1	0	0	0	0	0
GGGGGATCAGTAGGTT	ref_5181_reverse	33	32	22	27	29	26	27	16	35	17
GAGGTACCGGTGGTGC	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TCATATCTGCAGGAGG	alt_5181_reverse	26	39	32	38	33	30	34	26	41	26
CAGAAATGTCATTATC	ref_5181_reverse	25	37	44	36	42	38	40	35	33	21
TGTGATCGTGGGGCGA	ref_5181_reverse	39	23	45	24	36	17	22	28	51	21
GTACACTAGCCCTGTC	ref_5181_reverse	6	44	8	5	39	4	42	9	45	8
CTACGTCAATCTCGTT	ref_5181_reverse	116	107	143	145	137	114	123	124	133	130
GTGTCTTTTTTGTGAG	ref_5181_reverse	35	61	44	39	54	30	55	30	45	36
TCTAAGGATTTCGATT	ref_5181_reverse	30	41	32	20	31	30	52	36	36	35
AAATGCAGACGTCCCG	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
GAATAGAGTGTCGCGT	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
CAAGTGGGCTTTCGAT	ref_5181_reverse	19	25	22	18	28	20	21	21	28	13
TTATAATTTTCTTAAT	ref_5181_reverse	93	79	131	83	97	105	109	83	114	73
TGTTCGGGGGCACCCC	ref_5181_reverse	1	0	0	2	0	0	0	0	0	0
GTGAGGCTCATGTCTA	ref_5181_reverse	8	15	15	8	14	9	12	7	14	9
AATTACTTCCGTGGAT	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
AAAAGTCACTATGTGT	ref_5181_reverse	130	230	194	168	210	141	225	147	208	142
AATTTTCGCATCTTCG	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
CATCTTTGAAGAGTAA	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
GCTAATTATGACGGCT	ref_5181_reverse	25	30	37	36	28	29	32	24	27	28
CCATGATCAATGTATT	ref_5181_reverse	42	88	58	53	96	43	108	35	119	42
TTTTCTCAATCTACTC	ref_5181_reverse	53	55	73	36	57	32	69	46	57	49
CTAACGCATTAAATTT	ref_5181_reverse	62	91	90	70	85	58	89	66	102	68
ATCATAGGACGTGCGT	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
CGGGCTCAATAGGAGG	ref_5181_reverse	34	31	34	50	45	29	39	45	29	35
ATCGACTCATCTCGGC	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCGGGGGCAACCC	ref_5181_reverse	319	324	420	346	343	274	364	339	385	291
TCGTCGAAATGCATCG	ref_5181_reverse	33	45	62	47	41	29	36	52	47	40
ATAGAGTTCTTTACAT	ref_5181_reverse	7	12	11	9	13	10	11	12	17	8
GGGCACCAGCAGTTGT	ref_5181_reverse	5	9	6	3	7	9	13	4	7	5
GGAACCTTTTTAGAAG	ref_5181_reverse	19	29	33	28	35	23	40	23	36	26
TGTCCATATCTGTGTC	ref_5181_reverse	2	0	2	1	1	1	4	3	1	0
AAGTTCATGGAATGTT	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
CACGGCCTAGTGGCAT	ref_5181_reverse	39	59	54	54	65	55	56	57	63	55
CCGAAATTAATACATA	ref_5181_reverse	7	7	13	5	7	14	24	9	21	2
CACCAAATATTCGTCC	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCTGTGAATTGTC	ref_5181_reverse	56	58	77	48	71	64	81	56	92	60
ACCACCCGAAGCTGCG	ref_5181_reverse	29	43	20	18	57	26	65	23	58	16
TTAATTTTCAAGAGGA	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGTATGCCTAGCA	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
AAGGCCTGATGCATTA	ref_5181_reverse	22	32	32	32	29	13	37	25	32	21
TTATGCTCCGCTGTTC	ref_5181_reverse	35	44	35	38	38	21	53	31	33	25
TTCTAATTGCCGGGTA	ref_5181_reverse	9	6	15	9	10	4	1	15	14	5
TCGTGAGTTTTATGAT	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTGGCTATTTCCC	ref_5181_reverse	36	40	59	41	36	27	69	36	44	36
GTTTTCCCTTTTCCCG	ref_5181_reverse	55	77	75	76	71	62	56	64	87	62
GACCAGATGGTATCTG	ref_5181_reverse	35	40	53	41	30	32	41	25	26	38
TCGCTTATAAGGCTGG	ref_5181_reverse	21	25	33	16	28	22	31	20	32	7
TTGACCCACGGTGATG	ref_5181_reverse	18	20	27	18	28	21	31	20	18	19
TTTCATATTACTGGGG	ref_5181_reverse	43	71	70	59	59	66	61	64	76	43
CTGGATGTTTCTCCCG	ref_5181_reverse	226	395	281	239	370	216	404	204	423	186
GCGGCCATTAGGCTAG	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
GCTCAAGTAAACGCCG	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGATTGTCCTGGA	ref_5181_reverse	64	82	84	77	97	62	93	76	99	59
TTTCAAGCCTAGTTTG	ref_5181_reverse	1	4	2	4	3	1	2	2	7	1
TCATTACCTGATTAGG	ref_5181_reverse	88	131	97	84	140	83	116	73	140	74
TACTTTTAGGCACCTT	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGGGCGTGTCGAA	ref_5181_reverse	95	76	93	72	76	66	92	76	83	68
CGTCCCAGCTTACCAA	alt_5181_reverse	48	50	54	54	53	56	67	49	67	60
CTATCGATGGGTTCCT	ref_5181_reverse	20	19	29	18	18	19	26	21	37	18
CTAAGCAAGGAACAGA	ref_5181_reverse	39	50	68	28	55	38	64	36	69	52
ATAAGCGAACCGGGTA	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCACCTTGCATTA	ref_5181_reverse	127	139	153	120	124	93	138	133	136	112
AACCTCATAGTTCATA	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGTCTAAGCGCCT	ref_5181_reverse	0	0	0	0	0	0	0	0	1	0
GCCTCAAGCTCAGAGG	ref_5181_reverse	118	96	119	115	111	104	114	101	138	104
TACAAGAGGTCCGAAC	ref_5181_reverse	25	35	28	19	28	23	34	25	34	17
TTCATTCTTGCCACCA	ref_5181_reverse	31	39	28	29	43	26	34	25	38	29
GCCCTTCTGTCGTCTA	ref_5181_reverse	0	8	6	3	5	4	6	4	4	5
GGATGTACACCATGTA	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
CCTATAGAGGTCTGGC	ref_5181_reverse	26	22	26	34	23	18	28	32	29	19
AGGTGTCATTGATCCC	ref_5181_reverse	116	133	161	110	143	108	144	102	149	111
TATTGTACACGTTTAA	ref_5181_reverse	14	24	16	12	19	5	18	12	26	7
GGGTGATAATTGGCGT	ref_5181_reverse	6	12	5	11	8	8	8	5	5	4
GCGGTCAATTCCCTGT	ref_5181_reverse	93	81	104	86	113	91	102	68	108	92
GGAACTTATTAGTTAT	ref_5181_reverse	34	40	32	42	68	42	53	51	60	37
GGGCCCCAATAAGGAA	ref_5181_reverse	9	19	11	14	19	12	16	11	9	11
CCAAGAGTTTGCTATG	ref_5181_reverse	38	86	68	73	69	49	103	52	99	50
GGGATTGGGTTCGTGG	ref_5181_reverse	91	85	90	87	99	90	136	81	96	75
AGGTCGTCGAGGGGCA	ref_5181_reverse	3	5	3	2	0	5	1	7	0	0
TACTGGCGCTTCCAAA	ref_5181_reverse	77	66	58	57	76	57	65	58	68	47
TAGGGTGTTTCCCCGC	ref_5181_reverse	28	25	19	25	29	14	41	27	30	16
CCATTTATGTGCTTAG	ref_5181_reverse	15	21	17	21	17	10	28	13	23	5
GGTGGATGGAGAGACC	ref_5181_reverse	14	16	11	2	14	11	7	11	7	9
CTTGATACTGGGGAAA	ref_5181_reverse	38	48	40	24	58	34	50	31	43	31
ACCGTTTGATCTGCAT	ref_5181_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCGAAATAACACA	ref_5181_reverse	73	114	104	79	110	71	95	73	136	78
AGATTTTCACATAAAA	ref_5181_reverse	157	169	152	132	163	109	159	104	168	111
CTTCCTCCCAGTCGTT	ref_5181_reverse	24	41	25	28	31	23	42	30	43	28
TTTTTAGAAGGATCAA	ref_5181_reverse	14	24	25	23	16	19	19	9	19	21
AGATGGGCTTAGGTTA	ref_5181_reverse	17	16	12	12	20	9	15	15	12	10
TAGTGCAGGTATTAAC	ref_5698_new	97	67	107	92	57	106	59	98	69	72
TGAGAGTCCATTATCT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTACCCTATCGTAAAT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CCCGGGAACCGTATTT	ref_5698_new	0	0	0	0	0	0	0	0	0	1
TTTCTTGATGCTAGCT	ref_5698_new	124	87	175	151	77	160	83	150	102	138
CGCTTGCCTTCTGAAG	ref_5698_new	41	26	46	68	22	51	37	45	33	28
GCTGTATCACTTCTTG	ref_5698_new	226	100	293	309	133	213	136	242	109	207
GGATAGCATCACTTAA	ref_5698_new	292	176	368	335	141	324	183	281	172	294
GTTTGGTATGACGTAA	ref_5698_new	63	38	77	67	20	49	35	50	38	59
TCGGAGAGTAGCCCGA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CGGGACCATTAGCCTC	ref_5698_new	46	30	63	64	38	49	30	58	42	32
GGTACCTCATAGATGA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTACCTAGGTAGGTCG	alt_5698_new	60	47	72	64	52	47	43	45	62	43
AGTTAATATTCAAGCT	ref_5698_new	167	102	241	189	100	143	102	182	113	159
GGGTTTTAGAACTTTG	alt_5698_new	300	158	326	215	144	254	159	231	176	259
GCTACTCCCCACCGCC	ref_5698_new	3	21	5	7	20	6	24	7	29	3
CGGCCGTTGTTCCTTT	ref_5698_new	61	66	82	66	66	36	69	51	68	58
GTGTCGTACCTGTACT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
AGCAGCGTGCTCTCAA	ref_5698_new	64	23	80	43	23	51	16	44	25	33
CACTTACAATCTGCAT	ref_5698_new	28	12	20	36	17	28	24	29	13	26
CTCTCATCTGCTCGCG	ref_5698_new	110	75	168	134	96	130	83	145	78	108
AGTCAGTACAATGGTG	ref_5698_new	32	21	36	31	17	18	18	26	21	22
ATATGCGTCTGTGGGG	ref_5698_new	106	79	108	91	59	72	73	97	77	75
ATACCGCCAATATTGA	ref_5698_new	223	133	287	250	127	196	128	188	150	213
TGTGGGTTCTCTAGTT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
AGCTTCGATGGTGAAC	ref_5698_new	23	14	25	18	13	33	13	21	9	18
TATTTTTTGAGTCAGA	alt_5698_new	37	32	71	56	37	50	47	53	39	43
AGTTTAAAGGTTCTAT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CATGACTCAGATTCAG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CGTATGGATATGAGCG	ref_5698_new	131	119	176	170	86	160	93	155	131	161
CCCCCTGCCACCACCG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTGAGCTGCACGCGGG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GGTGCGCCGCTTCGGG	ref_5698_new	32	17	41	38	16	32	17	34	28	22
ATTCGTTGCATTTAGC	ref_5698_new	104	65	74	94	53	97	50	72	66	80
CCGTCTCGTTACCTAA	ref_5698_new	14	6	12	6	5	7	15	8	5	4
TCCGATCGGTCAGTCT	alt_5698_new	90	30	76	76	61	64	49	97	44	70
GCGGGCCGAACCTTAC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TCATGTTGGTTTGAGA	ref_5698_new	15	4	16	12	6	12	6	6	8	13
AAGTTCGATTACTGGG	ref_5698_new	105	79	144	119	54	94	65	94	68	103
ATCAAGCCTTGGAGCT	ref_5698_new	7	4	9	7	3	4	5	9	9	6
CCAGGGTGGGTCACTT	ref_5698_new	65	38	93	92	48	66	46	69	41	50
CTACTCTTTATTAAAG	ref_5698_new	129	97	169	146	104	160	119	133	103	139
AGGGTTAGTTGGGAAT	ref_5698_new	42	31	63	47	36	46	40	50	27	32
AGCCGGTGGAGCTTTT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GACATCCGGGAATCTT	ref_5698_new	6	4	7	6	2	5	2	8	2	4
CACATCGCTTCGGTAT	alt_5698_new	27	15	34	52	17	35	17	32	20	32
TTACTGTATGTTTGCG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
ACAGTCTTCCGTAGAA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTTACTGGGCTGAATT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GTGCCGTGAGGTAATG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTGTCTTTCTATGCCT	ref_5698_new	11	18	14	26	5	13	4	7	9	6
TTTATGGTCTCACGTT	ref_5698_new	41	26	56	44	21	53	30	33	28	46
TGAATAGACTGCCTGT	ref_5698_new	11	10	22	12	12	12	4	7	12	12
CAGTTTTGCTCCGGAT	ref_5698_new	130	89	135	137	95	156	108	155	106	115
TCAATATTAATCCGGC	ref_5698_new	68	28	59	58	18	44	47	48	32	39
TGAGGAACTTTTATTT	ref_5698_new	88	63	89	97	42	83	63	80	40	78
GGTACTCCCGCTGCTG	ref_5698_new	27	19	15	12	28	9	18	11	15	10
TCATCAGTCCAAGACC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GGTACTCCGGCAAGGC	ref_5698_new	17	17	22	38	12	22	18	18	15	15
GTCTGCTAGGAGCGTG	ref_5698_new	34	21	26	35	23	24	20	25	24	25
AATCATGTAGCATTGA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GCACTCTGCGCCGCAA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TACCTAGCCCCCTTCC	ref_5698_new	85	62	87	77	60	54	57	67	49	51
ATTGTCACTATCACGG	ref_5698_new	75	37	97	95	52	79	63	61	57	91
CTGGAGTCCCCCGGTC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CCCCCATGTTCAATCA	ref_5698_new	319	212	347	339	191	343	203	282	223	233
GGAAATCACATATCAT	ref_5698_new	42	25	45	43	23	30	23	25	19	28
TTCTAGGTCTAGCCAC	ref_5698_new	18	17	30	23	18	24	14	25	18	28
GCGTGTGTCATCCACA	ref_5698_new	15	3	12	21	7	10	11	8	9	15
TTGAAGTAACCCATGA	ref_5698_new	1	5	2	5	1	5	3	0	3	3
GCCATGCTTGTTGTTA	ref_5698_new	3	8	9	3	9	6	8	8	10	6
GTTATCTCAATTGATT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTATTAGGGGTTTTAA	ref_5698_new	7	8	4	15	10	9	6	14	6	1
ATTTGACTCTCTTTGG	ref_5698_new	61	42	66	70	46	70	34	73	47	62
GGCGTTTTATTTATAG	ref_5698_new	318	147	352	279	159	267	170	258	174	262
AAGCATTCAGGATTCG	ref_5698_new	23	6	30	12	20	20	6	22	10	11
AGATCTTCCTCTGTAC	ref_5698_new	29	18	47	52	16	37	8	30	18	30
CGCGGTCCAGCATTTG	ref_5698_new	22	12	17	30	13	19	14	20	8	17
GGACGGCAGCCAGTAA	ref_5698_new	431	199	490	424	191	392	201	363	221	402
TTGACTGGCCTAAGAT	ref_5698_new	50	37	62	42	27	51	36	39	11	50
AAGTGTTATTTCTTAG	alt_5698_new	31	10	31	33	12	18	11	14	12	15
GTATTGGTGTTAGAGG	ref_5698_new	79	47	102	78	39	81	57	60	49	47
CGTATAAGTTGCGGTT	ref_5698_new	58	27	60	51	35	42	44	58	34	44
CACCGTTGACAATAGG	alt_5698_new	3	6	6	4	2	7	4	10	3	3
CTACTAAGGCCACGTC	ref_5698_new	16	10	18	18	14	9	7	14	11	9
AGTAGCGCTGAATGCG	ref_5698_new	24	25	39	35	16	18	20	32	23	21
ATGGTCTTTATGGGAC	ref_5698_new	1	2	2	0	0	1	1	2	0	0
GTCCGTTCTTACAAGG	alt_5698_new	76	62	87	93	48	73	65	61	68	69
TTAAGGCCCGAGCAGG	ref_5698_new	89	44	104	85	44	83	27	76	44	61
CAGGCTCCCGCTTGGA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTCCGGACAGAGTGGC	ref_5698_new	17	3	18	13	8	15	8	10	11	17
GGCACTCTATTCTAAT	ref_5698_new	103	55	101	102	49	89	57	83	71	81
ATATCCCAACCAGCTA	ref_5698_new	140	80	207	156	89	152	95	154	66	143
GGTAGTCGTTTTGAAT	ref_5698_new	45	38	61	57	39	54	35	41	35	48
CTTGTGTTCGGATCGT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
AGGTCCTTCCAAGTTT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GGGTAAAGCTTTAGCG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GATAAAAGCAGTTGCT	ref_5698_new	74	60	103	82	45	77	64	86	61	84
TGTGGCACGGTTGTCT	ref_5698_new	206	88	247	207	100	166	118	205	128	172
TGCATGCATCGTTGTT	ref_5698_new	32	15	48	33	34	41	23	28	21	30
ACCTCATCGCCTTTGC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GTTGCCTCGTTACGCA	ref_5698_new	33	8	43	44	25	24	8	43	13	21
CATAGGGCGCTCTTTT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
ACCTCAAATCCGGAGC	ref_5698_new	69	22	65	49	29	50	34	43	34	55
TCGTTATCAGATGTTG	ref_5698_new	311	208	366	321	202	295	211	315	178	286
ATTCCCCCAACATAAC	alt_5698_new	124	72	136	116	63	147	78	104	79	105
CGAGTGACACGAGAGA	ref_5698_new	125	74	154	149	86	133	95	162	90	115
GTTGAATTCGCAATCA	ref_5698_new	62	36	93	79	36	71	27	75	37	69
ATATTTTCATATTTTT	ref_5698_new	115	39	124	114	58	102	57	99	70	79
CTCCCGCGTTTTTGCG	ref_5698_new	141	94	148	144	108	100	83	104	86	116
AAGGTGATGGTTTCTT	ref_5698_new	58	33	91	84	38	71	42	46	50	55
ATTGCGTGGTTCTGGT	ref_5698_new	14	11	31	14	8	20	8	20	14	9
CCCTGGTGTCGTGCGG	ref_5698_new	31	45	30	27	33	21	38	26	46	21
GATTTATATCTCGAGC	ref_5698_new	84	53	112	73	32	74	61	73	51	69
GCAGGGACAGTATTCC	ref_5698_new	67	27	93	87	40	67	34	49	43	53
GAGCGAGCATCGCCTC	ref_5698_new	7	1	11	7	4	6	5	12	5	7
CTGAATGAGTCTCTCC	ref_5698_new	53	37	80	74	29	60	40	42	36	42
TAGGTACTGCTTGTAC	ref_5698_new	0	2	3	4	9	1	5	2	2	4
CCGTTGCTGTCTAGTC	ref_5698_new	37	35	24	35	30	48	23	33	23	28
GAGTATCCCATTAGGT	ref_5698_new	3	5	4	5	1	5	3	7	1	3
CGCAAGGTGTTTTTCG	ref_5698_new	47	40	55	60	36	47	33	49	37	59
GTATTAGTTGTGTCTA	ref_5698_new	31	17	46	20	18	15	15	19	17	26
AGCCCGTCAATTACCC	ref_5698_new	3	0	3	4	3	0	1	2	2	7
AGTAGGGGGTTCCCCT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CTTGACACGTCCGTTT	ref_5698_new	165	104	204	147	110	123	118	151	115	162
AGGGAAGCTACCTCGC	ref_5698_new	166	100	170	187	78	150	87	133	95	138
TATTGACGCTTCTCTT	ref_5698_new	59	29	65	64	28	55	27	57	31	54
TAACTTCGGTACCATA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
AATTTTATTATACGCT	ref_5698_new	104	46	105	114	61	97	44	73	64	98
TATTTTTGATCTGGGC	ref_5698_new	27	18	23	32	16	28	23	22	13	24
GCCAATGGGGCATTCA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
ACTGGTTCAGTGTTCG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GCGGGCCTATGAGTCA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTGTCCAGTCTTCTTG	ref_5698_new	30	21	46	37	15	42	32	35	13	28
AACCCCCCTTCGCATG	ref_5698_new	14	14	8	8	8	14	13	10	10	11
CATGCCGTTTGACAAC	ref_5698_new	5	5	12	12	10	11	12	19	5	13
TCATTATTTGTTGGTG	ref_5698_new	36	20	61	43	29	34	22	38	26	30
GCGTAAGGCACTACTT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
ATGTGGACAACCGTGT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CTCAACTCGGCTAAAA	ref_5698_new	232	102	228	208	130	210	122	232	122	204
TATTGTTGGATGTCTT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GCGGCGCGCGCTTTCA	ref_5698_new	57	41	59	45	31	54	36	52	36	45
CTCCTGAAGGATGTTG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CTAATGCGCCAGTCTT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CTTATAAGGATATTTG	alt_5698_new	63	48	112	94	43	77	64	93	56	88
ACTGAGCTGTGCTATC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
ACGTTCTCGCTTTTTG	ref_5698_new	9	10	16	17	5	12	4	11	10	15
GGCCGTATTAAATTGT	ref_5698_new	2	1	6	12	2	10	3	3	6	3
CTTCCTTAAGTTAATC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CCATAAACCAACGGGT	ref_5698_new	48	40	54	59	34	44	49	53	35	35
ATTTTGAAATTTGCAT	ref_5698_new	210	120	234	232	144	251	128	206	143	191
AACGCAGAACCATCTT	ref_5698_new	80	36	87	105	46	70	44	98	45	60
GGATCTTATGTCATAG	ref_5698_new	62	41	78	73	28	59	46	61	30	52
ACTTGACTCACGGTAT	ref_5698_new	67	32	97	74	39	87	37	75	37	50
CTGTTGTATAGTGTCA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
AACCTTTATCTGACCG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GTTTCTAAAATTCCCC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CGGCATGCCGTGAATA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GTTTACGCTTCCATCG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
ATATGCGTGGTAGGAA	ref_5698_new	4	11	12	6	5	12	12	10	8	5
ATTTACTCCATATCCA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTTGATGTCGATCCTC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TATCTGTAGGATGCTC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
AGAAGGCAGTTAGTGA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CGATCATAGGTTCGCC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CTCCAACTATTTTAGG	ref_5698_new	5	7	6	16	3	8	6	3	8	11
GTGTCCTTGCTAATTC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
ACAACGGATGAGGTTC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TCACACGATTGAATCT	ref_5698_new	52	37	52	67	47	56	36	46	44	37
TTACCCTTCACTAACC	ref_5698_new	15	7	11	20	9	9	5	12	8	16
GCCTCATATGGCCTGG	ref_5698_new	131	83	166	129	83	136	79	106	99	137
GAGACTTGTCAGCTGT	alt_5698_new	137	68	162	132	71	118	70	133	70	130
TCGCTTACGTTGTTGT	ref_5698_new	35	24	42	31	18	35	17	42	21	49
CGCGGGTTTTCGGCCC	ref_5698_new	174	94	171	171	94	134	97	142	88	134
TAAGTGTCTACACATC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GCGCCATGAATCGACC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
TTACTCCTAGCGGGTG	ref_5698_new	13	6	14	18	16	18	9	15	12	16
TTATTTACCTTCCCGT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GCGGGCCAAACCTTAC	ref_5698_new	69	369	92	91	430	67	413	85	457	65
AACAGATTTGGTGGAT	alt_5698_new	511	260	597	483	262	496	284	433	260	386
GTTTCGCATTTGTCTT	ref_5698_new	100	56	97	85	30	75	42	73	45	80
TTGGTTGTCAACGTAA	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CATACTTGCGGTTTGC	ref_5698_new	134	57	145	130	75	116	78	122	83	119
TCACAAAATTCATTAT	ref_5698_new	54	31	61	52	33	49	43	44	24	44
TATATACCACCAAATC	ref_5698_new	53	28	65	63	33	45	24	34	41	46
AGCCTCTGTTCTCTTG	alt_5698_new	370	180	473	355	176	340	169	358	203	305
GTCTTCATTTGATGTA	ref_5698_new	75	38	92	80	46	72	35	58	40	59
ACCGATTCTATTGACA	ref_5698_new	96	70	116	101	72	85	70	94	69	88
CATCTACAGTCTAGAC	ref_5698_new	0	0	0	0	0	0	0	0	0	0
AGCCTTAAAATCGCGG	ref_5698_new	166	89	182	173	119	135	91	151	94	128
TGCATCCGGCGTCGTT	ref_5698_new	0	0	0	0	0	0	0	0	0	0
GTATCGGTAAACTTAG	ref_5698_new	9	7	16	14	12	14	5	8	12	8
GGCGTGCTAGCATTTG	ref_5698_new	26	16	22	21	15	25	30	26	16	35
CAATTATAAGTCTCTT	ref_5698_new	96	49	105	112	55	92	47	85	44	78
CCAACTGGTGGTTTAA	ref_5698_new	1	4	3	0	5	2	9	0	8	1
CGTAGGCTATCGATGA	ref_5698_new	59	36	75	75	36	63	43	69	32	68
AACACTTCTCCGTTTG	ref_5698_new	0	0	0	0	0	0	0	0	0	0
CGTCTATGCGCTGGGT	alt_3970_RC	63	75	94	71	77	65	83	68	90	58
GTAATATCACGTCGAG	alt_3970_RC	7	13	9	6	13	6	16	4	13	11
AAGCAGGAACAACCAA	alt_3970_RC	10	28	18	15	21	5	20	8	15	7
GAGACGATAGAGTGGT	alt_3970_RC	8	15	18	15	16	13	28	16	14	13
AAGTTAGATCCCCGGT	alt_3970_RC	108	146	121	119	145	96	154	104	146	96
TTTACACGCCTGTAGC	alt_3970_RC	24	19	12	11	25	9	15	14	18	11
ATCGTAGGTCAACATA	alt_3970_RC	36	44	35	33	52	28	41	24	51	16
AGTTGAGAAGCTGGTT	alt_3970_RC	5	17	6	9	15	9	9	9	27	2
AGGTTGCAGAGGTGCC	alt_3970_RC	0	1	1	1	1	1	4	0	3	1
GCTCTTTATTTGTTTG	alt_3970_RC	115	123	120	102	148	84	163	73	149	83
TGCTTGCCTGACACAA	alt_3970_RC	1	14	1	2	5	4	4	2	4	6
TTTCGGAATTGCAGGC	alt_3970_RC	29	33	19	40	26	26	25	15	33	11
ACCATGCGACAATTCG	alt_3970_RC	26	60	45	32	40	38	63	25	63	24
CATGCACGTACGGCTT	alt_3970_RC	3	3	3	5	5	4	9	7	9	4
TATCCCTTGTTTACCG	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TACCGTGTATCCCCTA	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
CTGAGTTTCTACCAAT	alt_3970_RC	115	57	140	86	65	110	75	89	61	120
GTCTTCCAAGCTGTCA	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GGTGCCTGACAGAGTC	ref_3970_RC	37	31	45	42	45	50	37	38	41	32
TGTGTAGTACAGATTG	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
CAGGTGGAATCTGCTG	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GTCGTTCCGGATCTAG	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTACAGCAAGGT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TGGCTTCGCGTATGTC	alt_3970_RC	9	8	14	8	21	12	15	7	13	13
GCGCATATGAGCACAT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GCCAGTTTGGTGTGGA	alt_3970_RC	7	18	18	16	29	11	25	6	26	7
TGAATCCCTTTTGCTG	alt_3970_RC	9	9	13	8	18	14	15	2	21	7
GCATTGGAGTTTCAGC	alt_3970_RC	1	2	0	4	3	0	3	0	2	0
AACGCGTCCGTAGTGT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
ACTTTTCGGGTCGCGC	alt_3970_RC	3	7	8	5	7	0	7	4	7	7
GAGCAACCATCAGTTG	alt_3970_RC	142	259	174	155	266	168	277	149	255	126
TACACGTTGCCTCCGG	alt_3970_RC	75	178	51	64	169	60	182	56	185	52
GATCGAAGTCTATTTC	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
AGAGGTGGACTAGGCT	alt_3970_RC	27	24	22	36	36	18	41	19	36	16
TTAGTGGTTGGCGTGG	alt_3970_RC	49	88	83	64	92	60	87	50	85	72
CCAGCACTTAGGACCT	alt_3970_RC	8	26	8	13	19	12	18	15	24	6
TCCTTTAAGTCTGGAC	alt_3970_RC	0	6	4	4	1	4	7	2	9	1
ATATGCGCGGCACCCT	alt_3970_RC	19	49	38	26	43	19	46	21	35	18
TTCTTCTATTTCACTC	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TAGTTACAGAACCGTG	alt_3970_RC	13	17	12	14	12	14	16	6	9	4
GGTGATGGAGTTCCTG	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TATCCTTCGAGCCGTG	alt_3970_RC	4	8	11	7	17	3	5	5	3	3
CGGCTGTACGGCGACC	alt_3970_RC	22	24	17	16	39	14	43	14	29	17
AATTGGCGAACTTTCG	alt_3970_RC	6	15	20	10	14	6	13	11	11	6
GAAATTCTCTCCTCAC	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TCAACTAGCATTGAAC	ref_3970_RC	141	228	167	116	209	152	225	133	242	106
CGTCATAATATTTTTG	alt_3970_RC	18	27	21	11	13	20	18	13	17	20
GACAACAGAATAGCTG	alt_3970_RC	51	72	62	48	73	46	71	46	88	41
GTTTGTGCATTACTCG	alt_3970_RC	8	14	8	8	15	5	9	7	15	4
GATGCGGCCAGGGGAC	alt_3970_RC	2	19	6	11	7	8	17	10	12	8
CCTCGACCCTAATCTT	alt_3970_RC	36	64	38	22	50	49	63	28	66	19
GTTGCCTTTCTTGCGC	alt_3970_RC	19	16	19	10	19	4	28	13	19	13
GCAAATATTTGCGACC	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GCTATGTGGACAGTGC	alt_3970_RC	45	37	23	17	46	27	37	35	41	16
AGTCTAGTACTTCATT	alt_3970_RC	3	1	1	1	5	1	6	4	3	2
TGCTCTAAGCCTGTTG	alt_3970_RC	25	48	36	31	62	46	53	31	78	25
TCCCGACTGTGCATTT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
CGCTAATCTGAGGTTA	alt_3970_RC	8	27	11	7	14	9	19	3	15	8
GCACTCTTCTACGATG	alt_3970_RC	1	1	4	6	3	2	10	4	2	6
TTTATAAAAACCTCCT	alt_3970_RC	72	94	76	67	99	76	110	74	115	62
TAAGTGCCACAAGTTA	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
ATCCCTTTGTGGCGCA	alt_3970_RC	10	23	11	14	15	10	15	11	15	12
GTTTGGGCGATTCCGG	alt_3970_RC	20	12	10	9	12	10	16	5	18	8
CACGCAGACACCTTTA	alt_3970_RC	2	13	9	5	5	1	9	6	15	6
ATATATTTTGACGATT	alt_3970_RC	18	30	19	16	38	16	36	11	29	14
TGTTAAATCGTTCTTA	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
AAGTACAGTCAGGATG	alt_3970_RC	8	8	11	14	21	16	20	11	9	10
ATTATTCTATGGGAAC	alt_3970_RC	13	16	19	11	16	13	9	9	12	6
ATTCTATACCTACGTA	alt_3970_RC	22	46	27	30	39	25	41	22	54	17
TACATCTCAGCGTAGT	alt_3970_RC	16	40	15	26	28	20	39	21	35	12
GGAGCTCGAACTATCT	alt_3970_RC	1	0	1	1	3	0	2	0	0	0
ATTCATATCAGCACCG	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
CGCATCGATTATGTTC	alt_3970_RC	38	39	40	45	53	36	43	30	62	35
CGTGGATCCTACTCTC	alt_3970_RC	8	7	7	7	13	5	17	2	5	10
ACTACTCGCAAACGTC	alt_3970_RC	28	65	15	24	82	18	81	9	58	14
TTCTATCTACGTAGGA	alt_3970_RC	18	15	40	18	18	18	21	24	30	22
GGAAACAAAATGGAGT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TAACCCTGTGTCGCCA	alt_3970_RC	6	10	8	6	4	5	10	8	6	8
ATTAGGGCGCGAAAAT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GGACTAACCCATTTGA	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GGCGCGAGAATCTCGT	alt_3970_RC	23	37	31	31	36	27	41	34	31	32
GTATTCATGTCAGGGG	ref_3970_RC	72	122	105	73	134	95	107	73	121	78
CACGTGCGCGTTCTTT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GGGCCACATGAGGTTG	alt_3970_RC	17	25	12	13	21	19	27	10	24	4
TCTCGGTTTTTGCAAC	alt_3970_RC	24	48	24	18	37	16	41	27	32	17
CTCCTTGGCATTCTCA	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
AAGGACTTTTCGTGCT	alt_3970_RC	19	19	24	13	48	23	43	14	22	15
GATACTCATTCAGCGA	alt_3970_RC	61	81	77	64	55	71	70	48	74	44
ATTTCCCGGAACGAGA	alt_3970_RC	22	36	36	29	30	24	33	25	38	24
TGTTGCTAGCTGTGTG	alt_3970_RC	1	1	1	0	1	1	4	2	1	2
TTCCGCAAATCTTTGT	alt_3970_RC	8	12	8	13	18	10	7	5	10	13
TCGGGACACCACACAG	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TAAATCGGAAAGGGTA	alt_3970_RC	11	19	14	10	16	6	13	12	15	10
ACTGCCTCGGAAGCTT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GATCTCCTCCCACTTT	alt_3970_RC	26	30	27	35	35	21	27	29	33	30
TCTCCTTCTGAAACGC	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
GTTGAGAGCTTCTCTT	alt_3970_RC	2	5	6	3	1	10	12	0	7	3
TTTGCCCCACAGTTAT	alt_3970_RC	0	0	0	0	0	0	0	0	0	0
TGGTCTGGCCACGCTT	ref_3970_RC	52	75	72	53	74	41	59	43	67	42
GTCACTTTACATTCCT	alt_3970_RC	29	34	34	29	33	30	26	31	35	21
CCCTCCAATTTCGTCT	alt_3970_RC	2	6	5	4	13	5	11	8	16	8
TCGTTCTGACAGGTAT	alt_3970_RC	10	19	13	11	22	8	19	14	29	4
CTGTCAGATAAGCAAG	alt_3970_RC	93	183	170	109	170	96	161	79	171	74
CTTCCATGGCCTAATA	alt_3970_RC	79	107	103	79	128	87	112	78	96	74
AAACCTGTATATCCAG	alt_3970_RC	63	153	87	71	150	62	138	69	137	71
CGGATGCTCCATTTCG	ref_3970_RC	16	13	17	14	8	12	17	10	12	8
GAATCTGGGGTCCGGA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GTGCGCGGCAAGCACA	ref_5799_new	96	62	96	95	63	88	84	92	61	90
CTTAAGTTATCGTTCG	ref_5799_new	302	151	358	278	178	278	195	263	172	243
AGTTGTCGAATCTAAG	ref_5799_new	41	29	50	48	26	51	23	42	18	48
GTCGGGCCACCGTTAA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TCCTCAGCCCTTGGAG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TCGTGTCAGATACGGT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AGGACTATTTGTAGAG	ref_5799_new	25	17	36	39	23	38	11	26	20	23
TCATTACTTTCCTGAT	ref_5799_new	35	12	35	51	18	32	21	23	23	25
ATAGCAAATCCGCAGG	ref_5799_new	23	11	29	25	7	25	11	16	16	17
CGAAGTCTTTCCGGCT	ref_5799_new	251	161	318	278	145	260	176	247	157	249
TCGTCCAGTTCAGGAC	ref_5799_new	201	119	262	215	116	195	128	178	139	140
AACACCGGTACGTAGA	ref_5799_new	132	76	174	149	88	137	67	127	90	116
CTTAGGCTATTCGGGG	ref_5799_new	11	10	23	8	7	29	5	15	10	10
ATAGTCCTGTCTTTTG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TTGTTGGTCGAGGTGC	ref_5799_new	61	37	93	64	43	67	43	74	37	62
CCGTTCGGGATTTGGA	ref_5799_new	5	6	11	9	16	7	2	10	9	12
ATCTGGCCCGAATAGT	ref_5799_new	155	62	187	170	76	132	90	152	70	143
TTTTGATGACCGATCG	ref_5799_new	155	77	189	169	92	163	77	158	96	139
CCCCGGGCTATTGGGT	ref_5799_new	85	57	90	90	61	74	48	57	60	65
CGGCCATTTATTAAGT	ref_5799_new	46	19	46	40	36	39	31	34	39	34
TTTCCAACAGGGGCCT	ref_5799_new	31	16	32	32	13	27	12	21	18	18
GGACAGCGGTTGAGTG	ref_5799_new	13	16	19	12	12	9	20	14	12	7
CCCCAAGCTACCAGTA	ref_5799_new	16	30	22	19	28	18	27	17	31	19
TGCGTCGGCCCATGCT	ref_5799_new	5	6	13	6	3	21	4	15	14	7
GGCATTAATCTCTTGC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CCGCTGGTTCCTAATT	ref_5799_new	0	3	3	4	3	4	5	4	3	3
ACCGCTCACAACCTTC	ref_5799_new	9	5	10	9	6	8	6	11	6	14
AGGTTGGTAAGTCATT	ref_5799_new	21	11	23	18	13	23	18	17	25	13
ACGAATAATGCCCGGC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CCACCGAAAGAGCTTG	ref_5799_new	3	3	6	8	9	5	7	6	3	6
CGCGCTTATAGAATTT	ref_5799_new	51	17	48	45	29	32	33	45	17	36
AGGAATTGCCCAGCCC	ref_5799_new	63	31	100	70	52	71	50	69	43	61
TTTTCCGTAACCCAAA	ref_5799_new	130	50	127	170	44	100	51	96	70	90
TCCCTAGGCAGGGGCC	ref_5799_new	29	30	42	51	26	21	24	40	36	35
GTTACAAAGTGCACGA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AGTATGTCTGCAAGTA	ref_5799_new	24	15	49	44	20	38	13	29	36	36
TGTTCCGTCCATAATA	ref_5799_new	138	79	163	143	69	150	56	128	89	107
CCGCCTATCCGTGGCT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CCTGTGACATCCCAAC	ref_5799_new	15	11	19	10	7	17	9	18	15	5
AATGCACCCTCGTTTC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AAATGGTTCGCGAACG	ref_5799_new	39	23	64	32	21	37	18	29	27	40
GCGAATCAGTCGTAGT	ref_5799_new	19	9	17	9	4	17	6	9	6	8
TTCAGGACCGTAATAG	ref_5799_new	12	9	9	11	9	10	11	9	5	7
AGCGAAGTCCCAATCC	ref_5799_new	40	31	46	37	29	34	21	37	25	46
AATGTATCTGTTTCTA	ref_5799_new	118	71	139	118	63	103	51	110	57	116
GCGACTTCCCTTTAGC	ref_5799_new	66	36	80	66	41	61	45	46	54	47
CTTGATGCTGCGTCAA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AATTATCGGGCCGCAT	ref_5799_new	260	125	316	273	118	242	111	242	138	215
ATTCTTTCTGCATGTG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CGGTGCGAAATCGAAC	ref_5799_new	30	12	28	28	22	22	30	18	22	25
ACGGCTCGCCCTCTAG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GGCTGGTCGTTAAGCT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ATCTCTTCTAGCATAT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ATTGGCCCTCTCCGTT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CGCGTCGATTTGTAGT	ref_5799_new	303	200	371	285	192	297	217	279	242	263
AACAGAGGATACTTTT	ref_5799_new	54	23	54	32	31	54	22	44	32	42
TTGTTTTTTAGACGCT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ATATCTCGCACGTATT	ref_5799_new	168	129	257	183	136	197	131	136	133	166
CAGTCTTGTTTGTTCT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TAATGTCTTCGTCTAT	ref_5799_new	29	5	33	28	15	30	10	32	10	33
TTAGGATACGGCTTAT	ref_5799_new	31	13	27	30	12	20	14	25	10	19
GGAAACCGCTCCTCTA	ref_5799_new	52	25	51	60	36	41	37	44	32	37
TGCCCCGGACTTTAGG	ref_5799_new	87	47	103	104	47	92	59	97	65	93
ACTTGGTATTTGGTTG	ref_5799_new	28	19	52	27	21	31	30	27	15	41
CAGGTGGTTAACAAAT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CCGAGCCCTGCTTATG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TTCTCCGCGAGTGCGA	ref_5799_new	21	9	29	24	10	15	19	15	13	12
GTCGCACTGCTCGGCG	ref_5799_new	3	12	11	10	6	8	2	11	2	13
GCATTACGTTATAGTT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CTTGACGCCAAACGGT	ref_5799_new	53	46	107	79	42	58	29	57	40	50
TTCCATACCCCGGCTG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GTGGATCAGACTGTAC	ref_5799_new	5	6	12	9	3	6	5	5	1	4
ACGTCACCGTGTCGTC	ref_5799_new	38	21	40	30	12	27	14	33	17	23
TACCCTTCCGATTATG	ref_5799_new	96	55	140	90	63	89	61	94	56	87
ACATTTCGATTGCAAG	ref_5799_new	9	7	17	12	9	10	7	12	9	10
ATTCACCGGAGCCTCG	ref_5799_new	69	49	93	74	54	69	44	71	57	62
GTGTTCCAGCAACGCA	ref_5799_new	42	27	53	40	29	43	34	48	25	33
CCGCGACCCCCTCTGT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CGCCGTTTGGGCGATG	ref_5799_new	136	93	154	118	92	131	96	131	88	130
CTGGTGTTGCTCACTT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CTGCGATAGGTCACTA	ref_5799_new	104	74	153	152	76	139	85	141	81	119
GTGGGACTTTGTGTAG	ref_5799_new	68	73	119	92	62	82	94	62	62	104
TGTGGATGCTCCCATC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TCCCGTATCGCTCCGC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TGGTTTTATGCATAAG	ref_5799_new	33	11	46	46	16	37	22	47	21	33
GTTGGGAAGCCTGGGA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AGAGTTCATCCATTCT	ref_5799_new	23	21	36	39	21	23	21	33	20	28
GCATGTCCCCCTGTTT	ref_5799_new	59	32	71	63	38	49	42	50	27	65
TTTAGTCAGTGTTTGT	ref_5799_new	94	50	86	95	52	82	64	69	54	65
GTGTGGTTCTATTTCT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ACCAAGAAATTTGCGC	ref_5799_new	71	40	102	106	57	80	49	100	46	66
CGCCTGGACAATGCCT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GTGGTATCTCTGTGAA	ref_5799_new	19	11	21	20	12	23	20	22	16	17
CTGTTCATTGACACGG	ref_5799_new	16	8	23	24	14	8	10	23	14	20
GATCTATCTCGTTTTT	ref_5799_new	57	27	68	60	36	71	17	57	25	65
TTCCTCCATATTCACG	ref_5799_new	121	78	178	151	70	144	80	121	90	108
TATTATTCTAGCCCGT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GACAATTCTAAACCGT	ref_5799_new	21	11	20	26	11	17	12	17	13	14
TGCTTTTATTACGGAA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GGTACATCTTGGCGGA	ref_5799_new	101	47	103	92	42	79	44	75	41	74
TTTTGTGCCATGCACT	ref_5799_new	66	47	75	62	44	54	34	59	49	57
CGACTGCTTTGGCGGT	ref_5799_new	58	33	80	65	31	57	37	41	31	63
CAAGACGATTGCCCGT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ATGCTGGCTTTGAAAT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TTTCGAAGTTAGTTAC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CTCTCTCTGAAACTGT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GTCAAATATGCTTTGA	ref_5799_new	81	35	81	78	56	75	55	72	54	60
CTTTCCCCTATTTAAG	ref_5799_new	72	88	103	72	76	80	117	86	89	70
TACCAGGTGAGATCGC	ref_5799_new	8	2	13	7	6	8	6	12	4	5
ATGCGCCATGCTATTT	ref_5799_new	23	7	28	23	15	25	14	28	10	25
CTCAAGTCCGTGATGG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CGATATGGTATCGGGC	ref_5799_new	27	9	35	20	14	20	9	17	23	13
TTAGTCTCTTGTATTT	ref_5799_new	18	11	26	21	18	20	15	16	32	14
TCATGGTGTCGCATTT	ref_5799_new	39	21	44	38	16	39	24	34	15	35
GGCTTGTCGAGATTAC	ref_5799_new	39	17	34	29	15	38	21	40	17	28
CAGCTGGCAGTGAACG	ref_5799_new	8	13	9	2	15	12	9	6	8	7
TCGGTGCATGACCGGA	ref_5799_new	25	13	34	33	14	28	17	18	18	23
ATACTGGTGAGCTGGG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TAAGCGCATGAGACAA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AGGCCCCGGTCTGCTA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AAATGTCCCAATCTGC	ref_5799_new	10	1	8	7	3	12	7	10	4	15
CATCTTTCTCTCTCGG	ref_5799_new	233	105	233	251	124	230	87	188	103	196
CGTCCCTCAGAACTTT	ref_5799_new	48	18	45	37	17	35	35	37	34	46
TCATTGGTTTCGATCA	ref_5799_new	16	7	23	15	13	14	8	22	12	12
TAGGGATTTTACATCG	ref_5799_new	142	100	205	171	104	153	78	132	76	120
TTTATAATCTTGACCT	ref_5799_new	79	40	87	90	45	56	41	72	48	78
CCGATCACATCGAGAA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TCTTGTTTCTACTAGG	ref_5799_new	18	7	21	14	13	28	10	23	8	17
TCCCTGTGTATAATGA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
AGATGGGACAGGTGCC	ref_5799_new	13	14	17	11	7	17	17	15	5	11
GAGAAATAATCACTTT	ref_5799_new	21	19	35	28	16	31	10	12	16	21
AAGTGATAGCCTCTGT	ref_5799_new	27	12	33	36	16	31	13	26	16	27
AGGCTCTGTGACGCTC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TTTCTTTCCTCGATAC	ref_5799_new	44	23	51	48	13	49	23	41	31	38
AGGGAGTTTGGTTTCC	ref_5799_new	59	40	89	63	25	51	39	58	34	36
GCCCACCGGACCGAAT	ref_5799_new	4	8	5	6	1	6	14	4	10	6
CGGTTATTGCTTATTC	ref_5799_new	30	9	24	30	14	29	11	24	17	19
ATTGACATGAGGTACA	ref_5799_new	19	12	7	22	10	13	5	16	8	11
AATTTTGCTTTCACCA	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TATTTATTCTCATTCG	ref_5799_new	86	44	102	109	52	79	36	83	60	33
GCGGCTTTTAAGGTCT	ref_5799_new	51	15	43	24	21	44	37	36	35	33
GGTCGCCCGTTTGCAT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ACGGTTACTGACCTCC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ACTTATATGGGCGACC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TACATGGTTTATTTAG	ref_5799_new	28	16	35	41	17	36	20	21	18	32
TCGGATACTAGTGACG	ref_5799_new	280	166	361	304	152	246	191	266	188	260
CTGGATATCTTTGCTG	ref_5799_new	12	13	16	18	8	13	11	15	8	7
ATGCGAGAGATATCCG	ref_5799_new	52	21	44	40	17	46	24	37	33	40
GCAGAACTGCATCATC	ref_5799_new	0	0	0	0	0	0	0	0	0	0
CTGCAGGGACTTTTAT	ref_5799_new	96	39	91	81	51	88	47	77	46	77
GTGAGAGTTCACTTCT	ref_5799_new	51	28	51	32	19	43	30	30	18	31
GTGAGTACTTCTATGT	ref_5799_new	226	133	282	220	132	185	104	166	153	193
TCCCTAGACCAAATAC	ref_5799_new	351	175	436	315	186	276	159	275	196	290
TGATTAGCTCCACTGG	ref_5799_new	143	72	161	151	109	145	80	128	107	132
GTAATTTGCTAGACCT	ref_5799_new	0	0	0	0	0	0	0	0	0	0
TTGTATAATTCAGAAG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
GTGGATCGTGTTCCGT	ref_5799_new	49	33	50	55	31	44	41	48	42	32
TGTCCTGACATTCGTC	ref_5799_new	25	10	27	22	21	21	12	15	26	19
ATTAAGGTACCCACTG	ref_5799_new	0	0	0	0	0	0	0	0	0	0
ATGAAATCACTTGTCC	ref_5799_new	37	17	37	26	17	26	19	27	12	31
CACCTGATACAAGAGG	ref_5799_new	26	12	27	20	9	25	7	14	7	15
CCCGAGGTCCGAAACA	ref_5799_new	0	2	1	0	2	2	3	2	1	0
CGATGGCATATATTTG	ref_4428_missing	8	9	13	8	5	7	4	11	5	6
ACGCCCCTCCGGGGTG	ref_4428_missing	39	48	24	39	43	29	55	31	63	31
CTGAGAATTAGCAGAT	ref_4428_missing	53	64	46	59	57	34	78	41	61	43
TGCGTATGTATTTGCC	alt_4428_missing	0	0	0	0	0	0	0	0	0	0
AACCAGCCCCACTCGC	ref_4428_missing	19	20	14	30	33	20	16	24	33	12
TCCACGTAGCACTTGT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TCCGTGGCCGTCCACT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TCCTAGTTCCTTTTTC	ref_4428_missing	62	74	75	73	69	49	85	57	88	57
CATTGCTCTAAATGCC	ref_4428_missing	73	98	107	81	106	67	108	72	112	74
AACTCTGGAGTAAAAT	ref_4428_missing	6	10	9	2	2	8	8	7	3	5
CCCTCTAGAAACGATA	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TGCATCCTAGGTAGCG	ref_4428_missing	12	16	18	19	21	14	19	15	30	13
ATTCCGCCTGGAACGG	ref_4428_missing	32	33	38	33	33	30	27	26	34	32
GAGGGCTTGCGACAAT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TGTTAGAGACCAAGAA	ref_4428_missing	1	8	11	4	8	5	6	6	4	7
GTCCAGTCATCGGCCG	ref_4428_missing	50	54	63	26	54	56	56	40	48	32
GAGGGTAGCCAGCTGT	ref_4428_missing	4	15	9	2	7	4	10	7	7	6
GTTACACATTTATCTG	ref_4428_missing	70	79	86	83	73	51	91	70	101	60
TATATAAGTCGGTTAT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TTCGTTCTGGAGCGAT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TCGTCTTTCCAAGGTT	ref_4428_missing	135	216	206	198	219	145	246	152	230	172
TTCGATTTGTGACCAG	ref_4428_missing	20	17	14	15	12	14	19	15	11	16
CCGTTTTCTGCTGGGG	ref_4428_missing	12	46	24	16	33	9	29	7	32	13
TTGGAGATAATTAGGC	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
CGCCCGGTGCTTGTGC	ref_4428_missing	7	8	8	11	7	8	15	6	15	4
GCTTCGTCCTTCGCTG	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
GCCGCCCGGTTATGGG	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
CTGCAGCCCGGGCGGC	ref_4428_missing	9	9	2	4	1	9	4	7	7	5
GCTACCGCCGGTTTTT	ref_4428_missing	29	28	22	23	32	30	44	24	34	26
GGTCCCACGTTCATTG	ref_4428_missing	9	9	14	16	14	11	11	7	11	12
CATGCTATGGCCCGAT	ref_4428_missing	17	9	22	15	20	16	18	19	18	18
CTTTTTTAAGTTGCGT	ref_4428_missing	16	19	15	6	24	13	25	11	21	16
GTGCGGTTTGGTTTGC	ref_4428_missing	85	142	93	104	112	78	109	84	130	57
CAGACTCGATCCACAT	ref_4428_missing	58	52	85	43	49	42	40	40	49	47
CACTTTCCTATCTAGT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TAGGGGACAGGATCAT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
AAGACGGGTACGCTGA	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
GATAGGTTATCCTCCT	ref_4428_missing	15	22	16	19	14	17	14	11	18	15
ATCTGATGTGTGGAAC	ref_4428_missing	16	38	29	20	46	34	59	18	42	37
CTGAGCGGTTGCATGC	ref_4428_missing	66	105	77	82	97	58	80	77	107	64
GCCGGGAAGCCGCTCT	ref_4428_missing	16	24	22	21	16	12	12	17	24	11
GATTGTTCTTTCACCT	alt_4428_missing	15	22	11	16	24	11	19	9	13	15
AGTCGGGCATTGGTCG	ref_4428_missing	19	10	33	22	24	17	31	24	27	17
CTGACCATCAAATACG	ref_4428_missing	10	13	13	13	10	12	15	16	23	15
TCGTGATAAAGTCTCG	ref_4428_missing	20	22	30	14	15	15	18	15	20	8
GTTTGCTGATCCGAGT	ref_4428_missing	4	8	4	13	10	6	13	8	9	7
TTCCTTAACGGTCTAG	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCACGCCGCTCG	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
AAGCCTTTCCATTTAC	ref_4428_missing	71	133	100	73	119	84	117	58	112	55
CCATTTCCATGCATAT	ref_4428_missing	11	19	12	7	8	8	11	12	10	9
TAGTTGACCACGTCCT	ref_4428_missing	0	0	0	0	0	0	0	0	0	0
CGTCTGCGCGCGCATA	ref_4428_missing	17	26	30	22	41	28	21	21	38	33
TCCGAATTCGACTCAT	ref_4428_missing	27	27	40	32	32	22	25	14	31	23
ACCTTTTTTGAGGTTA	ref_4428_missing	16	21	24	18	22	16	17	11	14	14
AAGAGTGGCAGAGTTC	ref_4428_missing	11	12	17	21	26	29	13	12	20	10
CGAAGGTTGGTTCTCA	alt_5944_new	21	34	19	22	48	34	38	20	54	20
ACAAGTATGTCACATG	alt_5944_new	25	34	29	23	29	17	39	29	40	17
TGTGGTCCGTTGGAAC	alt_5944_new	8	18	7	4	12	13	13	3	10	7
GTCCTCTCTGGGGCAT	alt_5944_new	2	5	3	3	7	0	4	1	3	1
ACGGGACATACGCCGC	alt_5944_new	42	58	32	35	56	31	59	40	71	28
CCTAGCATCTATCCAG	alt_5944_new	1	5	4	7	9	3	11	10	11	3
GGGCAAGACTACCAGC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
AGGGTCTATTGAATCC	alt_5944_new	10	14	16	8	8	15	15	7	23	7
TTAGCTTTTCGTCCAC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TCCCTCCTCTGAGATC	alt_5944_new	2	14	1	4	14	5	15	0	24	5
CATCTCCAGTTAGCTC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TGGATTTACCATAGCT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
AGTAGATCTATCCTCT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TAGCATTGGTCTAGAT	alt_5944_new	16	39	16	11	37	20	43	23	34	14
GGACCGGCATGTTCAT	alt_5944_new	10	24	21	16	10	18	11	12	30	12
GGCTTTGTGGCATCGA	alt_5944_new	10	18	3	7	11	11	15	9	15	3
GCCACTAATGCCAGGG	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TTTGATCTATTACAGA	alt_5944_new	13	24	23	15	31	16	19	8	31	16
TCTCTGTCATTATGAT	alt_5944_new	5	18	8	7	22	4	14	6	20	6
CATTCTGGAGTGAGTG	alt_5944_new	30	53	37	34	57	19	75	29	70	22
TGTGGTTCGCCAGAGA	alt_5944_new	78	88	80	73	127	58	123	64	122	68
TCGATTCATGAAACTG	alt_5944_new	22	54	29	30	43	22	48	23	58	35
ACTGAGGTTCGTCATA	alt_5944_new	3	7	1	4	1	0	2	3	8	3
GCTCGAACTATTTTCT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TCGGGCGTAGTTGGCC	alt_5944_new	24	26	27	6	28	20	28	17	19	11
ATTACGATGGGCCTTC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
AGACGATATAAAACCG	alt_5944_new	12	10	11	16	20	11	14	11	12	6
GTGCATATGTGCCCGG	alt_5944_new	18	41	26	16	32	21	29	24	35	24
CGCGTTTGAAAGACAT	alt_5944_new	8	20	16	9	15	12	16	16	23	19
GGCCTACCAGGCCAGC	alt_5944_new	24	41	23	30	34	22	37	15	28	16
CTTGCACTAGCCCTAT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
GCTTGGGCTGCTATCC	alt_5944_new	10	12	12	9	10	2	21	6	16	9
TACGTTACTAACCGAC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
ACCTATCTTTCCTGGG	alt_5944_new	11	34	22	10	14	7	26	8	34	10
AAACATATCTGTCCAG	alt_5944_new	0	0	0	0	0	0	0	0	0	0
ACGAAGCGCCGTGAAT	alt_5944_new	48	65	57	46	55	48	68	33	63	53
CGCGGCGGTAGTTTTT	alt_5944_new	33	64	50	60	78	48	73	35	89	27
CTCAGCAGGTTTAGCG	alt_5944_new	88	115	92	73	140	74	123	83	149	74
CAGGGGCTCCCCTAGT	alt_5944_new	8	20	9	5	30	6	35	14	19	4
GTGTCCCCTTGGTTTT	alt_5944_new	68	134	101	75	175	69	128	55	143	59
AACACGGGTTGTGGTG	alt_5944_new	16	51	31	21	41	22	44	27	61	31
CACTTCGTCCATGTCA	alt_5944_new	0	0	0	0	0	0	0	0	0	0
GGCATAGATCTGATCG	alt_5944_new	0	0	0	0	0	0	0	0	0	0
CGCCTTCAATCCATAT	alt_5944_new	25	31	24	19	32	14	44	24	38	12
TCATCTAGTTGGCGGG	alt_5944_new	35	58	47	36	53	26	61	39	84	31
GACCTCCCGCCTACAG	alt_5944_new	3	25	3	4	22	6	12	5	17	5
GAGTCGACGAGAGTTA	alt_5944_new	0	0	0	0	0	0	0	0	0	0
CTGGTGCATTGAGTGA	alt_5944_new	20	31	17	23	31	11	36	18	30	12
CATGACGGTCACGAGT	alt_5944_new	58	75	62	49	79	42	73	58	61	42
CATCACCCCTCGGCCA	alt_5944_new	13	35	16	19	22	15	19	18	31	10
AAATGCAGTTTGAATA	alt_5944_new	78	127	79	75	106	83	147	69	119	82
ACTCAGGGAGGGAATT	alt_5944_new	4	9	5	6	3	2	11	1	12	6
TTTAGGAATATGAGTC	alt_5944_new	4	2	1	0	1	0	6	2	5	0
AGTTTGCGCTCGTATC	alt_5944_new	0	4	1	1	3	0	2	2	1	2
TATCATTTTAACAAGC	alt_5944_new	6	4	4	2	11	4	15	6	10	4
CTATATGGCCTTCGCT	alt_5944_new	42	48	51	19	61	38	49	30	52	34
ACTTTATATGTTATAC	alt_5944_new	26	66	41	31	40	23	56	30	55	24
TCTCGACAAGTATCGC	alt_5944_new	12	14	13	14	24	11	30	14	26	10
CCCACACACTGCCACC	alt_5944_new	76	91	70	52	90	54	85	47	94	59
CTCCTGGGGAGTTTTC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
CAATTCGTCTGAGTTA	alt_5944_new	15	23	16	15	29	7	33	20	34	15
TCATATGCGTCCGGAT	alt_5944_new	3	12	6	7	6	6	14	1	10	4
TATAACTTAACGTCTA	alt_5944_new	15	20	14	8	30	7	27	12	16	7
GTCATTTTTCCCGGAG	alt_5944_new	32	47	36	39	64	33	72	37	69	30
TATCTTTGGTCGTGTT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TCCTCATTGGTAACGT	alt_5944_new	45	59	50	34	71	32	66	47	54	38
ACTCTCAGGGGGCGAC	alt_5944_new	24	40	30	28	22	25	34	30	42	15
TATAAAGTAGTATGCT	alt_5944_new	22	31	20	12	21	7	28	10	24	14
GTTAGTTACATTGTAT	alt_5944_new	10	13	9	9	11	6	20	8	14	1
CCTAACATTTTGCAAC	alt_5944_new	41	94	64	56	102	53	84	48	97	48
GGACCAGCATGTTCAT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
CAGCAGGGAGGGGACT	alt_5944_new	2	14	11	5	9	6	12	10	14	5
TACTGGTTCCTGTCTG	alt_5944_new	11	19	13	9	15	13	11	10	16	7
TGTGCCCTGAGTTGTT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TAATTAGGTGACTCAT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
ATTCGCGTGCCGACCT	alt_5944_new	72	138	84	99	114	81	159	63	174	68
GCGGGGCTTCCCGTCG	alt_5944_new	71	121	98	63	134	68	133	67	140	59
TTGTTCGACTATGTTA	alt_5944_new	10	23	19	11	34	14	22	14	22	16
GACATTCCTAGGCTGA	alt_5944_new	60	101	96	65	98	70	142	51	118	64
AATACAGACGGCCCGA	alt_5944_new	58	93	65	82	96	42	80	55	75	64
TAACAACGGATGGCTC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
GCACCGCATATACTAA	alt_5944_new	0	0	0	0	0	0	0	0	0	0
ATCCTCGGATTCTATA	alt_5944_new	5	20	24	15	15	16	29	18	26	10
TGAGAGCTAGGTTTGC	alt_5944_new	46	109	71	57	99	43	94	41	114	39
CCAGACCTTCAGACCC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
AGGTTAATTACTGCGA	alt_5944_new	18	28	20	11	37	26	35	20	31	17
ACTTCATGGAGCAATA	alt_5944_new	63	71	68	67	90	55	101	51	85	61
CCTGCGTAAACCAAGT	alt_5944_new	25	37	23	20	44	22	56	23	51	27
GGCATAATATGTCGAA	alt_5944_new	29	22	24	29	31	17	38	25	37	21
TTCTTCGTGCAATTAC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
GGTCGGCAGTTTAATG	alt_5944_new	14	25	14	12	28	15	28	11	37	16
CTACGCTTATGCTGTT	alt_5944_new	9	9	2	6	23	6	16	10	16	7
CTGTACTGTTTTTCGG	alt_5944_new	44	60	44	36	38	35	47	27	63	30
ATTCTGCATTGAAGAC	alt_5944_new	14	18	10	12	19	12	17	10	22	9
ATCGCCCAACTGCGAG	alt_5944_new	131	299	189	159	313	141	275	141	268	140
GAGATCGAATCCGCAG	alt_5944_new	23	38	26	30	30	24	36	26	35	30
ATAGTCGCACCAAAGT	alt_5944_new	56	69	44	62	56	49	83	46	72	43
AAGGCGTACACTTACT	alt_5944_new	3	23	10	11	16	13	26	6	30	6
AGCCTTGTGAACCGGT	alt_5944_new	55	83	45	46	91	29	84	40	83	36
ATTTGCATCGATCTAG	alt_5944_new	67	61	63	70	77	48	95	66	100	44
TGATATATTAATGGAA	alt_5944_new	0	0	0	0	0	0	0	0	0	0
CGGCCCGGATGGGTAG	alt_5944_new	33	76	53	27	106	34	93	34	125	32
TACCCGGTTTTTCTGT	alt_5944_new	11	33	20	14	34	3	46	11	41	7
CAGTCCCGACGACCTT	alt_5944_new	10	37	21	23	33	11	35	17	35	18
CACTTTGCCGATGAAT	alt_5944_new	54	73	56	41	57	49	79	46	72	38
TATCCTTTTTCGCTCA	alt_5944_new	19	20	22	21	25	17	21	12	24	18
TGGAACATTAACCGCC	alt_5944_new	8	12	13	12	11	12	8	9	13	6
CTTCTGGAGGCGATGT	alt_5944_new	26	50	38	29	49	26	59	27	56	29
AAATCTATCCCACAGG	alt_5944_new	0	0	0	0	0	0	0	0	0	0
CGGTTGAATCTTACTC	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TTGCAAGCGGCGGCGT	alt_5944_new	42	37	43	43	50	38	53	31	52	46
CGTACTTTTGCCGGTT	alt_5944_new	52	82	44	55	72	37	73	50	88	51
TCATCATCCGGTACAA	alt_5944_new	28	52	24	31	55	17	55	29	57	35
CTCTCCGAGTCTAGTT	alt_5944_new	18	33	26	15	33	13	44	11	46	21
CATTCTTTCTAGTGTG	alt_5944_new	14	18	6	11	23	14	26	6	26	7
TAAGCGGCCGTAGGTG	alt_5944_new	13	20	17	11	22	12	14	6	26	6
GACCGGTTGACATGCG	alt_5944_new	14	80	13	16	84	19	76	13	73	7
GGATCGAGACTCGGTA	alt_5944_new	0	0	0	0	0	0	0	0	0	0
ACAGTCAGAGGAGATC	alt_5944_new	22	46	21	23	43	21	47	25	51	17
AGTTTTTGAACGGTGT	alt_5944_new	0	0	0	0	0	0	0	0	0	0
TGTTTGTAATGTCCAT	alt_5944_new	37	64	34	45	49	46	52	38	64	30
TGAAAATTACTGCACT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CGTATAGGCAAGACAA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TTTGAATCGTGAGCGC	ref_5975_new	16	7	14	16	6	9	10	9	16	5
CATTACTTTCGCGTAC	ref_5975_new	6	10	8	3	11	6	7	10	12	3
ATGTTATCCCTTCCTC	ref_5975_new	13	8	10	10	8	11	6	2	14	11
CCTTCGGGTCATTTTT	ref_5975_new	78	142	93	87	159	66	150	100	140	68
GGTATTCCACAACGTT	ref_5975_new	100	117	108	114	128	82	142	104	131	84
GTCGTCACCAACTTTT	ref_5975_new	22	33	44	16	34	21	36	31	42	26
ATTAGGAAAGCTTACA	ref_5975_new	86	128	129	90	136	94	123	95	137	94
ATCAAGTTATAGCCGA	ref_5975_new	40	54	45	51	68	35	59	41	54	34
TCATTCAAGTTCGTAT	ref_5975_new	13	15	17	12	19	14	19	13	17	12
TCGTCTGGGTTGACTC	ref_5975_new	20	27	21	25	22	19	22	28	38	13
CTAATACTTCTACGAG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GAGCTAGTTAATTTCG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CCATTTCACATTTCTG	ref_5975_new	43	40	79	52	77	46	64	41	78	38
CGTTTTCCCAAGGCTG	ref_5975_new	25	27	25	28	23	27	35	38	28	29
TCAATTCAACGTGCAT	ref_5975_new	8	18	8	10	12	4	8	3	10	5
TAGGGGCCACATGGCG	ref_5975_new	18	16	19	18	9	29	13	10	24	13
TTAGTTTCCGCTCAAT	ref_5975_new	65	95	111	77	72	87	112	67	112	81
ACATCTTCGCTTTGCC	ref_5975_new	5	11	7	8	7	11	8	8	13	9
ACTAGCAACTTAAGAT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATGCGAGAGACGCAGC	ref_5975_new	11	23	14	19	28	19	20	20	16	17
TCAGTTCAATCAATGC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GTAGATTCACGATACA	ref_5975_new	1	0	1	1	0	1	0	4	1	1
TCTTCTGTCTGACTGG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATCGCGAATACAGTGA	ref_5975_new	46	47	52	40	58	42	46	38	44	38
ACAAGTGCGTACATCG	ref_5975_new	25	41	44	35	26	27	47	27	55	25
CATGGAAATACGAACA	ref_5975_new	34	26	47	20	40	20	34	27	43	15
CTAGCTGACAATTACC	ref_5975_new	172	237	210	194	224	186	233	135	255	147
TCGTATAGCAGCGCAC	ref_5975_new	20	8	10	15	13	16	17	13	14	9
ATCAACAGCTATCTGT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TTGTCCCGTTTCGTAC	ref_5975_new	27	31	33	29	32	24	43	24	53	16
TCTGGGTTTTTTGTAG	ref_5975_new	69	63	62	58	79	41	57	55	67	56
ATTCCAGTCGGGTAAC	ref_5975_new	3	11	9	5	10	6	8	5	14	8
TCGCACTGATTGTCGC	alt_5975_new	6	8	5	5	9	8	6	3	2	5
GTCCCTTGGCAGCGCC	ref_5975_new	12	9	16	12	12	12	8	7	9	9
GCAGGCTTAGAGTCTT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATCCAAACGAATAGGT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TTTTGCATAGCGTGAT	ref_5975_new	17	9	6	6	12	7	6	8	7	19
TCTTTAGTTGGATTAA	ref_5975_new	13	16	25	30	13	14	18	20	25	14
TGGCCTGGGTGACAGG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TTCCCCGCCTCTCCCG	ref_5975_new	5	15	9	5	19	8	25	4	24	2
GCTACAAGGTTCACAA	ref_5975_new	21	17	23	23	24	21	33	19	39	15
GTGTGTATGTTTTAGC	ref_5975_new	24	47	45	42	47	37	58	32	49	25
ATCGTGTCTTCCGTCA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TCTACGGATTTTAAAA	ref_5975_new	15	14	13	7	20	4	16	16	22	10
ATCAGTGTTTTATTCA	ref_5975_new	29	27	25	30	51	23	52	20	47	22
CTTATGGGTTTGTAGC	ref_5975_new	6	8	12	5	5	11	22	5	18	6
CGTCTCATTGAGGCAC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TCGTAACTTGTGCGTG	ref_5975_new	61	70	67	58	63	45	72	54	81	50
AAATGTTCCTAGCCCT	ref_5975_new	42	44	58	42	51	39	51	37	63	33
ATCGCCCGCGGCGTGA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GGACAGTGAATAGATA	ref_5975_new	14	22	23	9	14	10	14	12	17	22
AGTTAGTGACCCCTTA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATAGTATTTTGCGTTC	ref_5975_new	12	10	27	13	21	14	12	15	28	15
TCTTATATTCCGCTCG	ref_5975_new	23	35	34	20	42	21	34	27	36	29
AGCTTATTCTCACCAA	ref_5975_new	6	6	11	6	5	3	5	3	5	5
CCTAGCGCCGATAGCT	alt_5975_new	35	58	67	46	64	46	57	44	65	43
GGCCACAGGTACACGT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TACTCCCAAATCGTCG	alt_5975_new	10	45	11	11	30	10	51	10	40	10
TGGACTTAACCCCGGG	ref_5975_new	11	19	9	9	18	16	15	15	13	13
TCAAATGCTTCTTCTA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
AATCGTATGAGTACCT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TCATTCCTGTCGTGAA	ref_5975_new	14	13	21	11	28	16	24	9	22	11
GCGAGAATCATCCCAC	ref_5975_new	58	76	84	64	68	76	65	61	64	60
CGCGGTCAGCGTTTTA	ref_5975_new	47	47	45	39	51	51	54	43	45	52
GAAGGCATCTTGTCGA	ref_5975_new	35	50	43	25	38	33	44	39	51	30
TTGCTCTTTTACTTGA	ref_5975_new	4	0	1	5	0	4	1	1	1	2
ACGAAATGAGGCGGGC	ref_5975_new	83	91	145	112	137	99	125	100	128	106
TCTGGCCCGCGACGCA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CATTTCTGTGTTCAGT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
AGATTGACGGTTGTTT	ref_5975_new	51	83	76	65	65	91	70	68	66	63
TAGTCCGTGCTGCACC	ref_5975_new	20	21	24	14	20	16	23	26	19	20
CCTGCGGAAATTCACG	ref_5975_new	7	8	7	7	8	10	12	3	14	9
AGGTGCAAAACTCTTA	ref_5975_new	47	59	59	42	37	44	50	50	51	37
CAGTCCGATCCTTAGG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CCATCCGCTGGAGAAT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CCGAGATCTTTTGCCC	ref_5975_new	3	8	2	5	9	4	18	3	7	4
TTGGACGGCGTGCGTC	ref_5975_new	8	25	29	12	33	9	18	15	22	10
TAGTGTTATTTATTGC	ref_5975_new	5	7	6	14	11	4	9	7	10	7
GGCATATATGTGGATG	ref_5975_new	10	7	7	9	11	10	14	14	15	3
GGGTATTAAATATGTC	ref_5975_new	5	6	13	8	7	6	8	4	9	14
ATCCACCTGACTTGTC	ref_5975_new	20	30	33	25	33	30	36	19	28	9
TATTGGCGATAGGAGT	ref_5975_new	28	27	32	28	35	14	36	27	46	27
CCCCTGTCTTAGATTT	ref_5975_new	9	19	15	14	27	12	33	23	33	17
CTGAGACCAAGAGTCC	ref_5975_new	19	50	42	29	36	27	40	28	48	24
TTATGATTTAGCTGAG	ref_5975_new	4	10	12	2	3	3	12	10	11	6
TTAGTTTCCGCTCAAA	ref_5975_new	0	0	1	0	0	0	0	0	0	0
TCGTTCGGCACGTTAC	ref_5975_new	13	5	9	8	7	12	8	7	16	4
GGGGTGTCGGCGAAAA	ref_5975_new	4	1	3	3	5	2	4	5	4	4
CCAAGTCTTGGGACAT	ref_5975_new	0	4	1	6	2	2	4	2	1	4
CAAAGGCGGGGCTACG	ref_5975_new	21	22	21	18	11	14	24	19	15	10
CTTTTTCCTGCTTTAC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TCGGTGAGCTCTCTGG	ref_5975_new	80	77	96	74	99	71	80	74	77	69
TGAGGTGTGGCTATAG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TTCCACAGTGGAATAC	ref_5975_new	29	34	38	37	55	35	44	31	41	27
GTACTTGATCACCGCC	ref_5975_new	7	6	20	6	12	13	11	12	6	9
GGGCACGTTTCTTACT	ref_5975_new	26	16	34	22	33	25	31	26	28	14
GCATGCATTTGAGTTC	ref_5975_new	12	19	15	18	15	15	10	7	2	13
GACTAATTGTCTTTCC	ref_5975_new	31	32	28	33	29	37	16	18	27	31
TTTAATCTCACGGTGT	ref_5975_new	48	21	40	41	43	46	41	38	55	20
AGGTCGCGGACTGGAG	ref_5975_new	23	20	23	23	24	22	22	18	29	19
CAGTTTCTGTCTAGTT	ref_5975_new	7	4	8	10	8	8	5	3	13	2
TGATAAACCTGCATAG	ref_5975_new	14	35	27	20	25	30	32	32	37	31
CAGCCCGGGGTCTAGC	ref_5975_new	13	28	16	20	32	12	28	11	33	4
CATATTTATCGCACCC	ref_5975_new	40	66	47	35	48	32	71	50	69	42
CGTCTGATAGTGCCTG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GCTGTGGCACAGCACT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATGTAGAGCTTCTAAC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CTGATATGGCAGCTGG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TCGTCATGATACGCCC	ref_5975_new	8	16	15	11	9	8	16	4	25	11
CGGATGCTAGCTCAAC	ref_5975_new	11	16	21	12	22	6	14	14	23	10
TTTACACTCGGATGGA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TACAGTGGCCTTCTGT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TTTGGAGAGTGATTAT	ref_5975_new	3	3	8	3	1	3	4	4	4	0
TTTTGCGCTTTTAACG	ref_5975_new	12	13	9	7	13	7	16	6	22	8
GATTCTTGGTACTCCT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GGTACCCTGATCTAGG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GTAATTTTACTGTGCT	ref_5975_new	15	21	15	18	17	12	20	13	22	13
GTTTCGCTCTACGATA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATATAACTACTAAAAC	ref_5975_new	104	71	97	66	64	67	81	63	50	55
AGTCGTCTTCATATTT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TGTGATGCAGACGATG	ref_5975_new	10	11	13	12	10	10	21	10	8	16
TTGGACTATGTTTGTT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TAAATTACTCTAACTC	ref_5975_new	6	7	6	11	8	2	5	7	10	4
ACTCCAACGGTACATC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
AAGCTATTTCGCGCTG	ref_5975_new	11	13	14	9	14	12	13	11	24	16
TAAATTTCACTCCAAG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CGGGATGCCATGTTGT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TGGTTCAGAGATTTGC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TTAGCATTGTTTTCTG	ref_5975_new	25	44	44	27	42	29	26	27	32	33
TGGCCCGATGAGCCCT	ref_5975_new	4	2	1	0	3	3	7	1	6	3
TCTGTCATGCTGATTT	ref_5975_new	7	8	5	6	4	5	6	6	9	7
ATGAGACATATATGTC	ref_5975_new	26	33	29	39	31	40	43	37	34	27
ATAGTTCCCCTCGCAG	ref_5975_new	4	1	6	4	2	3	8	2	9	1
GTACATCCACGAGAGT	ref_5975_new	3	3	10	2	2	0	4	0	2	1
GGCATCGTATGTATGG	ref_5975_new	75	86	105	92	99	81	106	80	90	92
TGTACTGGGGTTACCG	ref_5975_new	6	11	8	14	15	11	14	12	10	3
GTTTTAATCCTTCCCC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATATGCTTTCTTCGAG	ref_5975_new	13	20	17	17	16	14	23	7	24	16
GGAAGTTCTTTGGTTG	alt_5975_new	31	31	31	27	28	22	24	25	25	21
AGCTGGTTACCGTGCC	ref_5975_new	41	35	33	34	32	27	27	27	31	20
GGTGGCGGTACCTCTT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ATATCGCCTTCTGATC	ref_5975_new	89	80	111	99	106	93	81	83	118	89
TAACGTGGCTTTCGCT	ref_5975_new	22	13	24	13	21	13	8	24	16	15
TTCAACTTAGGTTAAT	ref_5975_new	103	101	112	75	107	80	109	89	97	76
AGGAACTAGGGCTAGC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
CTACCTCTCTGACCAG	ref_5975_new	35	45	45	35	47	34	49	29	53	30
AAACACAGTGGGATGC	ref_5975_new	0	0	0	0	0	0	0	0	0	0
TGCGGGGGACAGGTTT	ref_5975_new	0	0	0	0	0	0	0	0	0	0
ACTACGGCCCTTGAGA	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GTCACGCTTTTGGTGT	ref_5975_new	33	27	24	25	41	31	30	26	36	26
GAAGTCCGTCGAACAT	ref_5975_new	8	18	9	9	22	6	10	13	15	10
TCGGCGTGGGCTCTTT	ref_5975_new	7	10	14	7	11	4	12	7	12	7
CCATTGTGCTAACATG	ref_5975_new	0	0	0	0	0	0	0	0	0	0
GTTTATTTTCTACTTT	ref_5975_new	61	44	82	64	60	46	47	57	52	66
TTCCCCCTGGTTGCTG	ref_5975_new	8	10	8	4	9	8	7	6	14	13
CGCAGGATGTATTACA	ref_1616_reverse	17	18	13	12	25	11	26	10	17	13
GCACGGCCACCCGTAA	ref_1616_reverse	18	37	29	26	56	13	57	19	53	14
TGATTCATCCGTTAAA	ref_1616_reverse	2	4	3	1	3	0	1	6	6	1
TGAATGTTGGCCTCGA	ref_1616_reverse	28	60	42	31	60	35	57	25	67	36
AATCGTGCATTAGTAT	ref_1616_reverse	3	11	4	0	6	2	4	6	8	4
TATGTGCAAGTACCAC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CACTCTCCGATGGATG	ref_1616_reverse	89	320	102	83	270	90	297	89	288	78
ACCATTTGAAGTTATC	ref_1616_reverse	10	15	7	9	22	5	18	12	23	7
GTTGACATGTACACTT	ref_1616_reverse	51	119	58	46	123	38	92	43	126	40
GCTGTTGAGGTATGTG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TCATCGTCTATTACGC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTAAGTTCGGGTAGAC	ref_1616_reverse	13	16	18	11	11	4	18	14	17	10
GCCTGGATTTCATACA	ref_1616_reverse	7	18	3	5	17	7	23	2	14	9
GGCATTTCACTCGTTC	ref_1616_reverse	7	28	6	10	28	9	27	5	31	12
GCATTGGTTCGCTTGT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GGTACCAATTGCGACT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAGGATTCGGGAA	ref_1616_reverse	17	52	16	14	38	16	26	13	40	21
CGGCGCACCCACTTTT	ref_1616_reverse	17	29	15	15	19	18	28	10	20	15
CGGTATACGAGCAATG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTAAGTGTAACATGTC	ref_1616_reverse	10	22	12	7	27	3	23	8	17	9
CGCCTGTCCTGACGCA	ref_1616_reverse	13	24	10	10	27	12	31	21	24	15
ACTGCTGCAAGCAAAT	ref_1616_reverse	1	2	2	2	7	0	3	2	4	2
TGTAGTTACGTGATTT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CCATGCATGCATTTGG	ref_1616_reverse	2	6	0	3	8	2	4	1	5	3
AGGATTCCCGTCTTGT	ref_1616_reverse	0	1	0	1	0	1	1	0	0	2
GGCGGTGATATGCGCG	ref_1616_reverse	7	11	7	9	12	13	16	8	20	5
TTGTTGGCTATGAGCG	ref_1616_reverse	29	32	25	16	38	18	37	17	38	21
ACTCCGACCTTGTTCT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACATGCGTAACTAATT	ref_1616_reverse	64	73	71	56	83	70	71	52	64	51
TTATATTTGATGTTAA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CATTATAGTGTACTCA	ref_1616_reverse	41	115	65	49	125	42	122	57	116	69
TTTATTAGTCAGTGGC	ref_1616_reverse	70	156	111	75	156	71	186	70	202	94
ACGCACCGCCGGCCTA	ref_1616_reverse	34	76	46	46	92	30	90	32	88	38
GGTGGGACTCCATTTG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CCATCAAGTCGGTCAT	ref_1616_reverse	15	20	16	6	18	6	19	12	16	4
GGTTATACTTGCAGTG	ref_1616_reverse	10	31	8	8	33	7	33	6	21	2
TCGAGCATGAAAAAAT	ref_1616_reverse	42	62	26	30	85	22	66	33	56	22
ATCAACTGCTTGAGGT	ref_1616_reverse	20	35	23	11	35	11	37	12	42	21
TTTTATCACTCGCCTG	ref_1616_reverse	3	5	0	0	1	1	5	0	5	3
GGAGTTAAGTCTGAAT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCGTTGTGAGCGG	ref_1616_reverse	52	79	51	44	72	61	85	53	87	42
TACCCTGGGCACTGGC	ref_1616_reverse	6	19	13	3	21	10	20	8	24	3
CGGAGCTTCTCACGTC	ref_1616_reverse	58	100	81	58	125	45	119	76	112	52
TTTGGCGCGCCACTGT	ref_1616_reverse	5	8	5	6	14	5	6	4	8	8
GAACACCGATCCCCAA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCCGGACCTACTC	ref_1616_reverse	21	51	29	23	57	19	57	20	59	18
TTTCGCACGATGTAGG	ref_1616_reverse	12	15	6	2	14	9	12	3	20	9
TGACGCGCGCTACGGC	ref_1616_reverse	25	47	41	30	54	33	73	23	64	31
ATTTATCTGGTGAGTG	ref_1616_reverse	4	4	5	7	7	2	4	4	11	7
ACGGTGTATCTAGTAT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCCGCCTTTAACG	ref_1616_reverse	14	22	21	16	20	17	20	11	22	13
AAAGATTTGCCGTGGT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GCTATTCTCCCCGGTA	ref_1616_reverse	2	8	1	0	6	1	2	0	10	0
GCGAATATTACACCGC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACTACCACTCCGTTGG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTTTTGGGTGGCC	ref_1616_reverse	0	0	0	0	0	0	1	0	0	0
CAATTGACACTGTTAC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
AACTGGGTCACCTATT	ref_1616_reverse	44	84	47	38	112	42	73	45	109	58
AGTTTTCCCCCCCTCG	ref_1616_reverse	11	21	18	11	28	19	21	8	23	19
CCCTGGGAGTCTAACC	ref_1616_reverse	42	64	47	29	78	32	79	27	70	30
CTTTATTGTGATGAAC	ref_1616_reverse	3	13	1	4	5	0	7	4	16	1
TCACTGGGCCACGGCG	ref_1616_reverse	52	115	62	68	109	43	97	47	127	42
TCGCGGGTTACTCTCT	ref_1616_reverse	2	0	2	2	3	1	2	2	2	3
GGCACGGGCATTCATG	ref_1616_reverse	6	6	3	3	9	3	9	4	10	3
TTTTGCTTACTAGGTC	ref_1616_reverse	2	3	3	2	0	0	2	1	3	4
CGCTTTACTTTCAGGT	ref_1616_reverse	18	36	18	15	24	16	20	12	21	17
TATCTCTGTTTTAGTA	ref_1616_reverse	19	42	24	20	25	20	32	27	37	20
ATTGATCCGGTGCATG	ref_1616_reverse	12	26	10	8	23	14	21	13	23	12
CGCGGGGGTACGCCGT	ref_1616_reverse	2	2	4	2	10	4	3	2	12	2
TGCCAACTTTATTTCG	ref_1616_reverse	13	37	15	25	35	13	45	19	54	16
TCGCTCGAAGAGTCTC	ref_1616_reverse	12	24	9	9	20	14	16	19	30	7
CTTGAATCGCATGGTC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GCGGACTCTCTCTTAT	ref_1616_reverse	8	11	5	5	12	7	17	9	15	6
TTCTCTGCCTTAACGG	ref_1616_reverse	20	14	13	13	18	8	24	8	22	10
ATTTCGACTGAGGTCG	ref_1616_reverse	13	46	24	12	32	23	49	16	43	10
GACAGCTTGAGTATCG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTGTTGACAATTT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTGGCTCGCACCC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TTAAACTGGGATTGAT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TGTAAAGTGCGTTCGT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTTAGAAAACCGC	ref_1616_reverse	12	11	6	14	21	11	18	10	17	4
GTACTTGTGGACTTGG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTGGTATAGTGA	ref_1616_reverse	4	4	5	2	10	4	5	3	4	1
TGTCTTAGCTGTATCA	ref_1616_reverse	100	184	101	86	155	78	208	56	177	83
GTATATAATTTGTTGG	ref_1616_reverse	5	6	3	1	10	2	4	4	4	4
CGAAGATTTCGGCTTC	ref_1616_reverse	2	5	8	3	9	3	4	3	7	6
CTGACTGTCGGGCATT	ref_1616_reverse	7	27	18	14	21	10	34	12	22	18
GCCGAGGGAACCGGCA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CGGACATCTCTAGCTA	ref_1616_reverse	49	85	52	37	73	46	74	50	62	28
GGTCTTATGTCTGGTT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CATCAATTAATATTCC	ref_1616_reverse	7	2	16	7	2	9	7	3	10	10
TGGTGTGGCCAAGTTA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTCGCTAAGACG	ref_1616_reverse	1	0	5	7	4	1	6	3	1	2
GCTCGACCGGCCTCTT	ref_1616_reverse	21	85	21	37	97	10	93	23	110	18
ACACAGTGGCACCCGA	ref_1616_reverse	21	34	25	20	41	16	47	30	36	26
GGATTCTCATGCCTCT	ref_1616_reverse	9	17	12	2	21	17	22	10	22	13
CCATTACCAATGGGGC	ref_1616_reverse	12	27	22	25	53	20	36	23	38	22
CCTTGTCTTGCAGCAA	ref_1616_reverse	19	34	15	13	33	13	47	14	23	14
TTAGTACTAACGTTCT	ref_1616_reverse	4	8	1	7	5	4	2	1	4	7
TAGAAGACCAAACTAG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGTAATGTAGTTA	ref_1616_reverse	3	20	7	8	16	4	16	3	17	5
AAAGCAAAGCCTCGAC	ref_1616_reverse	12	23	20	8	6	14	17	3	8	5
CATATTTCAGATGTTG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTTTAATTCCCTG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTTGTCCTGGGTT	ref_1616_reverse	14	22	18	21	30	14	26	16	37	15
GACTCCCTCATTTGTA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGCAACCTTGCGC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCAAAAGCCGTAG	ref_1616_reverse	9	37	24	15	29	13	30	23	31	15
CTTGCCTCTATCGTGA	ref_1616_reverse	32	103	44	46	101	33	87	29	112	32
TGCTAGACCACTTAAA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
AACTAGTCGGGTCTAC	ref_1616_reverse	4	14	5	8	8	3	16	5	14	4
CGAATCCATGGTAGAT	ref_1616_reverse	84	114	91	81	141	81	124	65	149	91
AAGGGTTGTGCGTCTT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAAGATCGTGCAT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTCGACCCATAAGTGA	ref_1616_reverse	1	3	1	1	0	1	3	4	0	1
ATATTGTGGCTACGTT	ref_1616_reverse	46	97	68	50	89	43	98	46	111	55
TTTGGAACTCCCCACG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGATGGAGCCCGG	ref_1616_reverse	9	15	7	8	12	10	12	8	10	6
AATTCGGTCAAATGCT	ref_1616_reverse	23	45	41	23	39	19	51	20	61	15
TTGAGCACTCTCCCCC	ref_1616_reverse	1	2	1	0	3	0	4	2	4	1
CCTGATGTACGTCCAG	ref_1616_reverse	7	39	13	6	40	13	32	9	42	6
TTTGAAGTCGCCGCTC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TCCTGTTCACACATCA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGTACGTCGTGAT	ref_1616_reverse	25	45	29	21	41	17	25	15	31	18
ATCAACCTTGTCGAGC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTGTCGCTGGGTC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATGAAGCACGTGTCTC	ref_1616_reverse	8	1	4	4	1	5	5	4	3	2
TTTCCACCGGATGTTC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATGACTTGCTACATAT	ref_1616_reverse	14	35	17	15	36	10	29	10	35	16
AGTAGTTAATTTGAGA	ref_1616_reverse	24	46	32	22	45	29	35	27	32	24
TATGTCCGCAATCTTG	ref_1616_reverse	14	26	15	12	16	11	23	13	22	12
ACCTCGCTCCCCGCTT	ref_1616_reverse	0	1	0	0	1	0	1	0	4	2
TTGGTCACTCAGCCTC	ref_1616_reverse	12	22	14	9	22	11	37	7	22	12
ATGTGGTGTGGATATC	ref_1616_reverse	5	9	7	8	14	4	9	7	15	7
TTCTCTTTTAGCAGGA	ref_1616_reverse	10	15	12	12	13	8	12	4	21	15
GATTCCATTCCACTCC	ref_1616_reverse	1	23	3	2	25	2	31	1	40	0
CGAGGCGCGCTCTTAC	ref_1616_reverse	1	30	7	6	41	5	37	4	32	5
CCTCTATATGATACTT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCGTTTAACAGCT	ref_1616_reverse	43	70	59	34	71	41	75	42	67	35
TAGCCTAACTCCGGAG	ref_1616_reverse	3	17	11	9	14	6	27	3	23	10
GCTACCCTTGAAATCT	ref_1616_reverse	1	7	7	1	6	1	4	1	6	3
GCCAGTTGGGGGGATC	ref_1616_reverse	26	56	40	29	58	31	60	48	61	23
TGTGACGAACCTGTTA	ref_1616_reverse	25	13	24	16	17	18	17	9	22	19
GTACGGCGTCAGCCGG	ref_1616_reverse	19	31	20	14	38	14	28	12	31	13
AATCAAAACAATACTA	ref_1616_reverse	2	6	0	1	4	2	2	2	0	0
TATGAAGTCGCACGCT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
AACATCCAATTGCGCA	ref_1616_reverse	13	22	16	8	21	14	17	17	28	13
TGCATTGGTACCTCCC	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CATCGAGTTCTCATGT	ref_1616_reverse	12	38	11	20	30	12	27	11	22	14
AAAAAGGACCTGAGGT	ref_1616_reverse	2	5	3	1	4	1	7	2	2	1
TGGCCTCCCGTATAAG	ref_1616_reverse	0	1	0	0	0	0	2	0	0	3
ACAGGTCGTTCTTCTT	ref_1616_reverse	9	5	8	5	14	5	12	4	3	5
ACTTTTTAAGACAAGA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CAATCTCTTGTCCTGA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTTTTGGTCTGTC	ref_1616_reverse	22	51	27	42	54	28	62	20	59	23
TCATAGTCGGGATTCT	ref_1616_reverse	94	127	108	88	152	68	167	85	146	70
GTTGAATCAATACAAC	ref_1616_reverse	8	25	11	13	25	12	18	13	17	10
ACAAGTCATCGTGATA	ref_1616_reverse	56	68	55	33	60	39	70	39	92	38
CCCTCTTATTTGTGTG	ref_1616_reverse	17	52	20	17	46	10	54	5	43	9
ACGCATGCTCAACTCT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGTCGTTCGCTTC	ref_1616_reverse	23	33	14	12	34	23	42	14	55	12
ACTCCCTACATTGATG	ref_1616_reverse	1	1	1	0	4	0	3	0	1	0
AACTCGTTCTTCCATA	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGCACGCCGCCTG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
AACTGGGCGGATTATT	ref_1616_reverse	34	60	49	47	95	51	97	29	88	37
CTTTCTAATTTGGCAA	ref_1616_reverse	1	2	2	1	0	0	3	1	1	0
TTAATTTGATATTCTG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGTTCGTAATTGA	ref_1616_reverse	30	78	37	34	53	26	57	41	55	27
CGTACCGCTTTGCTAT	ref_1616_reverse	19	31	14	14	37	10	18	20	37	8
TCTAGTTTGTGTCTGT	ref_1616_reverse	4	15	6	8	33	5	15	5	23	4
ATCACTTATATGATGT	ref_1616_reverse	2	13	6	7	11	2	9	3	12	8
GTGGGTATTGACTTGT	ref_1616_reverse	13	37	24	23	27	14	43	16	53	12
ACCATGTAAGTTTTGC	ref_1616_reverse	1	2	1	0	0	0	3	2	1	2
GTATCCCTGGGGAGTG	ref_1616_reverse	26	59	35	26	42	31	42	36	52	17
ACATTTTCGAGTTACA	ref_1616_reverse	6	10	9	5	6	7	13	8	6	1
TGGATGGCATCCTGTG	ref_1616_reverse	1	3	3	1	1	0	4	2	4	1
ACTATTTCCTTGCTTG	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGGTGGTCTATAT	ref_1616_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTTTATTGGTTGC	ref_1616_reverse	5	9	4	13	12	10	26	6	17	7
TGTCCCCGTTAGGGTA	ref_5983_new	66	133	68	82	150	63	130	59	144	58
GAATCCCGGGTTTAAA	ref_5983_new	12	28	19	27	26	17	43	17	47	11
CTGGGGTTTTTACGGG	ref_5983_new	13	28	13	10	35	8	25	10	27	8
GGAAATCGTATGCAGT	ref_5983_new	19	29	10	14	32	17	33	13	41	22
GATTGGCTCTGAGTTG	ref_5983_new	0	0	0	0	0	0	0	0	0	0
GCCCACCGTGTAAGAG	ref_5983_new	2	7	4	2	3	6	5	7	6	1
CCTACTTCTCTTCCCT	ref_5983_new	7	17	10	6	18	11	23	13	28	4
TGCATAGTGGATTATG	ref_5983_new	0	0	0	0	0	0	0	0	0	0
TGGGTAGCGCTACATT	ref_5983_new	0	0	0	0	0	0	0	0	0	0
GCGAACGTGTTGGGAC	ref_5983_new	12	26	10	8	22	18	20	12	20	10
GTTTTCATTGATGCTG	ref_5983_new	9	20	24	13	23	14	14	19	22	14
TCAGGACATTCTCATA	ref_5983_new	32	48	29	33	38	24	55	23	61	23
GCCATTAAAATTACTT	ref_5983_new	26	37	36	17	41	22	49	23	39	22
CAGCTTATATAAAAAC	ref_5983_new	55	79	57	60	89	30	116	41	79	37
GAGCCCTACTAAAATG	ref_5983_new	0	0	0	0	0	0	0	0	0	0
CATGTCCCCTGCTTCA	ref_5983_new	33	64	52	49	43	27	54	43	66	41
CATATTCCAATGGCGT	ref_5983_new	55	50	41	44	44	48	56	39	36	26
TCGCGCGCATAAGCTT	ref_5983_new	0	0	0	0	0	0	0	0	0	0
AAGAGAATGGTCTATC	ref_5983_new	0	0	0	0	0	0	0	0	0	0
CATGTTCTCCGTTGTT	ref_5983_new	40	220	46	42	215	40	222	52	266	25
ATGATTTTTGTAGTCT	ref_5983_new	17	42	35	27	44	24	49	19	34	24
CTTGTTGATCCTGTCA	ref_5983_new	38	49	48	45	57	35	54	38	60	26
GGCATGATCTATCTCT	ref_5983_new	0	0	0	0	0	0	0	0	0	0
GATGCTAATATTTTTA	ref_5983_new	10	13	17	17	11	14	12	6	17	9
TACTACTGGAGGGGAT	ref_5983_new	5	10	4	8	15	13	4	6	11	0
GGAAGTGCCAAAAGCG	ref_5983_new	0	0	0	0	0	0	0	0	0	0
GATCCGGTCTGATCCT	ref_5983_new	22	32	31	18	45	16	44	15	36	14
ATATATCTTCTTGCCG	ref_5983_new	5	3	4	0	0	3	1	1	4	1
GATAGCCTATCTGCCG	ref_5983_new	68	131	94	65	142	77	164	66	167	47
ATATCAGACGTATCTG	ref_5983_new	161	312	201	163	251	156	283	138	318	148
CAAGCATGCGATTTCA	ref_5983_new	22	48	53	19	61	24	50	25	55	30
CCTTCCTGTATCGATT	ref_5983_new	21	26	11	12	32	14	31	12	26	21
AGTAGCACGAGCTGAG	ref_5983_new	14	20	23	11	20	13	33	11	15	11
ACGATGCTCGTACGTC	ref_5983_new	0	0	0	0	0	0	0	0	0	0
TCGACCGTTCATTCGG	ref_5983_new	18	34	32	14	46	14	45	13	40	16
AATGTTTTCAGTTTGA	ref_5983_new	1	4	10	7	3	6	4	7	9	7
GCAGTCACATTTGAGT	ref_5983_new	71	106	65	50	100	43	88	39	100	58
CCATCTTAAGCTCGTG	ref_5983_new	0	0	0	0	0	0	0	0	0	0
CGGTTTTGTTCACTGT	ref_5983_new	32	64	47	28	55	41	80	37	62	38
TGAGGTCGAGTTACGG	ref_5983_new	19	33	29	24	31	16	38	16	38	9
CTATATTCGAAGGGTG	ref_5983_new	25	62	37	31	53	30	56	25	45	15
CTGGTCATGCGTTGGA	ref_5983_new	3	5	3	5	2	2	3	0	6	3
TTAGGCACTTGCGTTA	ref_5983_new	4	6	5	6	1	3	5	4	13	4
CTCCGTTTGTGCTAGT	ref_5983_new	14	40	19	14	40	21	39	7	24	12
GGTAAGTTAACACCGA	alt_340_negative	16	14	23	27	16	14	20	12	14	11
TCTGACGGTCTTTGGG	alt_340_negative	144	178	155	156	190	155	207	148	185	146
ATATCGAGCAATACCT	alt_340_negative	52	37	53	61	26	32	43	33	41	31
CCGGGTAGGCTGGATT	alt_340_negative	7	29	12	6	40	9	53	11	33	9
GAGGACAGGAACTATA	alt_340_negative	0	0	0	0	0	0	0	0	0	0
CTAGTGTTTCCTTTCT	alt_340_negative	8	9	10	11	8	6	7	4	10	8
GGAGCGTTTTCCGTTA	alt_340_negative	22	28	28	24	27	26	31	24	24	17
TGCGGCTTTCTCATAT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
TAATGCTAGAATGCCC	alt_340_negative	100	78	111	117	84	97	87	67	98	77
ACGTTATCGGTTCTCC	alt_340_negative	0	0	0	0	0	0	0	0	0	0
ATCCACTACGTGCAAC	alt_340_negative	38	38	45	33	45	34	31	49	41	39
TCGGCCGATCACTGTG	alt_340_negative	35	26	31	12	25	30	29	30	28	22
GGGCCCACGCCTAGCT	alt_340_negative	16	21	27	13	20	17	17	14	9	19
CTTCATATTAAGCTTC	alt_340_negative	0	0	0	0	0	0	0	0	0	0
CTCGGGGCCCCGGTTC	alt_340_negative	0	0	0	0	0	0	0	0	0	0
CTATTGGTGTTAACTG	alt_340_negative	24	21	22	20	28	13	17	17	20	18
GGGTCGATTTCTTCCT	alt_340_negative	46	46	37	57	42	48	49	37	37	40
TTGTTGAATTCCGTAG	alt_340_negative	21	16	22	23	17	28	19	16	22	24
GCTTTCCCATGCGGTG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GTGACCTGGGACTGCA	alt_340_negative	30	16	36	26	31	39	33	22	29	19
TATCTGATATACAGGC	alt_340_negative	21	13	25	18	18	11	18	14	15	19
GAGATTTGGTAGACTT	alt_340_negative	13	9	14	13	12	5	12	16	11	11
CCGATACACACAATTT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
CACTGCCCACTATGCC	alt_340_negative	27	28	28	18	23	20	31	18	38	19
TCAAGTACAACGTAGG	alt_340_negative	33	52	70	56	44	57	48	52	57	51
TATTGTGCTTAGGTCC	alt_340_negative	0	5	6	1	7	3	5	5	3	1
TACCTCAGTCTTTTGC	alt_340_negative	9	14	10	7	7	2	9	5	13	3
CGTACAATTCTCACGC	ref_340_negative	28	40	29	28	39	26	42	15	63	13
GTGTACATAACGGAGC	alt_340_negative	0	0	0	0	0	0	0	0	0	0
TCGCGTGTCATTGCGT	alt_340_negative	28	26	25	26	34	26	31	32	26	28
AGCTATCACTCGGACT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GTTATAGTACGGTTGG	alt_340_negative	3	9	16	9	8	5	6	10	15	7
TGACTTGACCCTTTGG	alt_340_negative	79	101	113	114	104	93	111	72	98	74
AATGACTTCTGTAAAC	alt_340_negative	86	77	89	71	67	78	99	85	64	67
TAGGGTAATCGGTCGT	alt_340_negative	30	44	43	39	37	20	40	41	45	15
AAGAGCATCATACAAG	alt_340_negative	78	76	106	65	67	75	85	61	73	65
GGTCTGACTTCATGTC	alt_340_negative	30	21	27	19	23	20	20	19	22	19
CTTTGAGATAGAATCC	alt_340_negative	15	17	8	13	15	15	11	10	16	15
CCTGTGAAGGTCCATT	alt_340_negative	9	14	16	16	21	14	26	8	20	12
TTATCACTGTTTCGCG	alt_340_negative	31	30	25	35	36	21	30	30	14	33
CGGCCGGGTATGAGCT	alt_340_negative	172	162	201	166	164	152	157	125	213	145
AAACTTCTAAATGGTT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
AGGCTGCGGAATGGCA	alt_340_negative	0	0	0	0	0	0	0	0	0	0
CATTTGGAGTTTTGAT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
ATTTTTATCGTCAACA	alt_340_negative	57	64	77	77	53	52	57	52	75	60
TAATTGCGTGCGCGTT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
TGTATACCAACATTGA	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GAGGGGGAATAATCGG	alt_340_negative	15	18	31	32	19	34	18	28	15	27
TTTTCTATCAAGGTAT	alt_340_negative	35	32	50	31	38	35	39	36	44	36
TGACGCATTCATCAAC	alt_340_negative	7	14	13	11	10	5	8	13	16	7
GTCTACGTTTCGATTT	alt_340_negative	40	37	44	30	31	31	26	30	26	23
CACGGTCTCCAGGCCT	alt_340_negative	25	86	45	47	87	39	85	26	94	43
ATTAGTTTCCGGTTAT	alt_340_negative	33	31	28	34	45	26	31	23	39	32
ATATTCCCCGCTGGTG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GGCTCTCTTACCTTTG	alt_340_negative	1	4	0	0	3	1	3	1	0	0
TCAATAGGCATACGAC	alt_340_negative	30	21	31	31	21	37	15	24	26	14
CCGTCGCGCTTTACGA	alt_340_negative	6	3	15	8	12	2	14	11	5	3
TTTTGCTCAGCAGATT	ref_340_negative	8	5	8	4	7	4	4	5	5	6
ATAACTCATCTCTTTA	alt_340_negative	23	25	34	18	24	30	22	27	26	19
GCGACCCGTTAGGCAT	alt_340_negative	20	25	23	26	17	25	18	27	14	25
TGCGCTTAAGACCACG	alt_340_negative	161	210	209	157	182	172	217	150	187	146
GAGCCGTGTTGTAGCT	alt_340_negative	13	13	21	11	11	15	14	12	12	22
ATCTTACGAAGCATTC	alt_340_negative	14	12	15	8	10	11	13	8	18	9
AACTTTTTTTGGGATT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
TATAGCCTGCAATTGT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
CTCTAAATCAGATTTA	alt_340_negative	32	17	27	30	16	27	24	16	21	23
GGTGATGTTTACCTTC	alt_340_negative	25	14	29	22	22	18	22	16	20	14
ACTTAGGAACGGTCGG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
TCTGTTGAGATTGGTT	alt_340_negative	80	75	93	68	71	76	84	69	100	71
CGGTATTGCCAGGAAC	alt_340_negative	0	3	2	3	6	4	4	0	2	3
CTAGCGCGTTATTATC	alt_340_negative	40	25	33	43	27	25	29	35	34	25
GCAATTTTACTTACCG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GGTTTTTAACGATCCT	alt_340_negative	16	12	22	23	26	13	22	15	12	14
GCTATACCGTGATTAC	alt_340_negative	11	12	16	12	18	14	28	18	23	17
TAATAATTACATTTAC	alt_340_negative	50	45	47	58	30	36	28	52	43	47
TCTGATGAGATTGGTT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
TCCTAAGATGGCGCAC	alt_340_negative	71	49	82	64	62	86	43	63	57	70
GGTAACGTCCCTAGTA	alt_340_negative	37	30	41	24	36	25	33	27	35	35
AGATGATGTCCATTTC	alt_340_negative	9	10	16	13	3	12	9	12	10	15
ACACGGCGCTGTCCGA	alt_340_negative	72	53	78	83	73	74	58	83	73	70
TTGGCTGAGGGTGGGC	alt_340_negative	473	419	592	503	470	503	491	449	489	420
TGTCTTGCCTGGATCT	alt_340_negative	11	8	14	17	11	14	8	14	17	8
TTCATTGTCTTTCTCC	alt_340_negative	22	19	20	14	26	26	32	15	30	26
TATAATCCGTTCTCAA	alt_340_negative	43	28	55	49	46	36	43	30	37	31
GATTGGGTCTCTAACA	alt_340_negative	56	58	78	66	51	50	53	53	54	42
TTGCGCGCATGTTAGA	alt_340_negative	129	157	173	147	163	129	159	139	133	134
CTTCGGCTTATCGTTT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GCCTGTTGTAATGCTT	alt_340_negative	3	5	9	12	5	5	8	6	6	6
GCATCCTTCCACCATT	alt_340_negative	36	43	46	32	56	25	51	39	61	51
TCGCTCTCTTCTAGCA	alt_340_negative	37	39	39	32	26	30	31	37	44	33
AGGAGTGTGTTTCTAC	alt_340_negative	34	30	58	39	43	37	34	39	48	46
TATAAGGGTACATTGA	alt_340_negative	145	159	205	194	175	160	154	152	158	131
GGTTAAGTTTTGCACA	alt_340_negative	11	14	14	21	10	12	13	8	8	13
TGTCCATTACTGTTTG	alt_340_negative	42	34	49	37	48	27	40	26	38	32
TACTGAACAGTATAGG	alt_340_negative	17	18	21	14	17	12	15	8	20	14
GCATCCTTATGTGAGC	alt_340_negative	83	84	81	71	66	68	76	60	81	69
CTGTTCACGCGAGCTT	alt_340_negative	2	1	2	2	2	5	5	3	0	1
TTTTCTGCCGGGCCTT	alt_340_negative	0	0	0	0	0	0	0	0	0	0
CAACATATCCCCTTTG	alt_340_negative	18	50	39	27	50	25	37	29	51	32
TTAACGGAAGTTTGGC	alt_340_negative	39	55	62	54	62	47	51	43	44	40
CTTCCCGTCCCCTGAT	alt_340_negative	81	143	95	81	146	77	127	82	184	72
TGCGCTTCGGAGATGT	alt_340_negative	35	28	41	24	32	39	39	25	49	26
CAATAGTTGTTATTGC	alt_340_negative	63	59	66	67	55	60	59	59	73	58
ACGATCTAGTACTTCG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GGATGCCAGTTCTTCT	alt_340_negative	13	17	23	19	10	14	7	13	14	17
AGTGTTTCAATCGTGG	alt_340_negative	18	16	13	10	20	9	22	8	29	14
GTGTGTGCCGCCGATT	alt_340_negative	4	10	10	9	6	7	14	5	10	7
AATGCAACAATACTTC	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GCACACGTTTGCTAGG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
TCCTGGAAGGCAACAG	alt_340_negative	20	19	19	25	15	17	13	12	19	24
GTATAGAGGGCGGGCC	alt_340_negative	17	14	12	18	23	15	23	15	20	6
CAGGGGTATTTTGCTA	alt_340_negative	1	0	0	0	1	0	0	0	1	0
GCTACACATTTCAGGT	alt_340_negative	25	17	29	30	29	29	20	23	23	22
CTGGCCTCGAGGCCGG	alt_340_negative	5	5	4	1	7	8	1	1	5	6
CTGTCTCAGTATGGCT	alt_340_negative	17	12	24	9	12	13	17	10	24	13
GTCTAGGAAATCGAGA	alt_340_negative	8	6	10	7	5	6	10	5	6	7
CGCGCTGGTTACAGCT	alt_340_negative	14	14	36	14	18	15	17	10	15	25
TAGTGCTGTTTATTAG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
GTCGATTCGATAAATG	alt_340_negative	0	0	0	0	0	0	0	0	0	0
ATGGACATATCGCAAT	alt_340_negative	53	51	55	29	54	43	69	40	46	42
ACTTATTCATATGGGG	alt_340_negative	21	31	22	23	16	21	22	21	30	15
CGGGTTTCCGTGCCCA	ref_3966_upstream	7	37	10	14	53	5	41	6	46	10
CTGTCTCCAACCTGCG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
GGTGAACAAAACTGGT	ref_3966_upstream	46	66	83	59	63	63	60	74	75	50
TGGTATCCTCCAACGA	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTATTGCATTGCC	ref_3966_upstream	49	49	57	52	41	54	53	57	44	23
TTACGTTTGTTTTCTC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCGGATCGATCTAGTT	ref_3966_upstream	15	13	19	14	15	12	22	16	14	21
ATGCGCTAATTGGCCT	ref_3966_upstream	52	34	60	45	54	31	55	31	37	42
GGTGGACTTACTGTCG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGAAAACGTGGTT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTAAATGGGCTGCCGT	ref_3966_upstream	26	22	37	31	25	19	30	30	28	13
CGTTCAGTTTGTTAAG	ref_3966_upstream	124	127	170	154	139	130	166	119	144	124
ACATCGTTACCTACAA	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CATTAAGCTGTCTTAC	ref_3966_upstream	37	27	43	47	42	42	34	33	34	51
CTTCAGCTAGGGTTCC	ref_3966_upstream	42	31	44	49	67	38	49	23	79	42
CAACGCTACTTAGGGC	ref_3966_upstream	39	41	47	53	37	31	46	35	41	42
TGCGTTGCTTTCCTGT	ref_3966_upstream	159	150	222	161	152	149	146	167	145	136
TTTTATAGCCACCCGC	ref_3966_upstream	46	39	60	46	38	52	43	54	65	48
CATTATTTCAGCCATC	ref_3966_upstream	5	6	9	5	12	7	3	4	7	6
TTGTTCGGGGCGAAGG	ref_3966_upstream	1	5	1	8	4	7	4	1	1	2
GCTTTGTTCTCGGTAT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGGGATTACATT	ref_3966_upstream	53	41	45	54	34	40	35	48	48	46
GCCAAATCCTAATTTC	ref_3966_upstream	19	25	25	22	21	18	18	17	31	24
TTCACCGATCGCTCAT	ref_3966_upstream	68	92	75	54	82	67	85	67	97	65
GACCCCTAAAGACTAT	ref_3966_upstream	45	32	63	35	48	39	40	39	43	33
ATGGTATGAACACCGC	ref_3966_upstream	25	19	28	26	19	25	29	26	16	30
AGTAAGTAGGAGCAAG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCACACAGTACCGCTG	ref_3966_upstream	15	3	11	8	10	15	6	14	13	5
ATTGCGTCATTATACG	ref_3966_upstream	5	11	8	7	7	6	9	10	9	7
GAGAAAAGAGTTGAAC	ref_3966_upstream	87	78	119	94	69	98	89	95	86	68
TTGCCTGGCGATCTAT	ref_3966_upstream	8	8	16	8	10	12	9	12	22	5
TCTCACGGATCGATCC	ref_3966_upstream	10	13	15	17	7	11	14	11	15	15
TTTATCCTGAGTGGGC	ref_3966_upstream	6	5	7	2	5	2	1	7	6	6
GGTACAGTTTACGTGT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTTACTGAAGTGT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGTGTGTCTGGTC	ref_3966_upstream	15	16	28	32	27	25	22	15	17	15
GCGCCGAGTTGCCTAT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCAGGTTTTGCCG	ref_3966_upstream	506	513	618	517	442	517	542	495	458	448
TTCTCGCTACCTACAG	ref_3966_upstream	44	37	46	61	49	40	51	45	56	46
GACCTTGAATTCCGTT	ref_3966_upstream	40	22	43	30	38	37	35	20	42	27
TTGATAGGGACCGAGG	ref_3966_upstream	7	1	8	2	7	5	2	6	3	2
TCAGGATGTTGTCCTT	ref_3966_upstream	50	49	55	41	41	50	28	55	53	42
CTGGTCTCGTCTACGC	ref_3966_upstream	14	32	30	30	17	20	36	28	29	18
TTGCTCTGGTTTCCCT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CGACTACTGCGGCGTT	ref_3966_upstream	30	24	32	34	21	28	24	29	19	38
CACTCTGCCTAGTTGC	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTGTTTTCCACTA	ref_3966_upstream	45	35	60	44	61	51	58	48	37	52
GGGACTGATGCTTCTA	ref_3966_upstream	2	3	6	3	4	5	2	2	2	1
TTGGATTATCGTTCCT	ref_3966_upstream	34	27	39	36	21	31	21	13	24	22
ATCGATTACTGCACCT	ref_3966_upstream	49	49	78	54	67	48	50	48	42	37
CAACACCGGACTGGTT	ref_3966_upstream	4	5	7	5	11	5	10	7	12	5
AGATGGGCTAAACAAC	ref_3966_upstream	14	13	18	15	14	4	12	15	10	16
AGAAATTGTACCAGTG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCCGTCCCTTGCC	ref_3966_upstream	7	7	11	6	9	9	10	6	8	4
ATGATTACAGTCGCTC	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGAAATATGGAGT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTATGCCATAGTGCTG	ref_3966_upstream	2	1	0	1	5	0	2	0	1	1
AATCGCAGTGTGTGGC	ref_3966_upstream	6	6	8	9	7	11	7	9	7	6
CTGATGCGTAAGAGCG	ref_3966_upstream	8	5	9	12	5	9	13	9	12	12
TTGTTGTATATATCTG	ref_3966_upstream	77	90	106	87	95	88	87	84	71	74
GTCATCCTGTTCTGGA	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CGACTGCCTGTTGGCA	ref_3966_upstream	5	12	5	16	7	11	7	8	16	9
GGAATTACTTTCGAGA	ref_3966_upstream	44	43	51	56	33	44	50	44	32	40
GAGGCAGCTTTTTCTC	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTAGATTTTGCGGAGG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCATATTCTCGGTTTC	ref_3966_upstream	10	3	12	14	5	7	9	11	11	7
TATGCTTTTGAAAGTT	ref_3966_upstream	93	132	155	103	122	101	94	104	107	129
GCTAGTAGGCGGGCTT	ref_3966_upstream	28	29	33	34	26	29	38	28	25	30
GCGTACGCGAATTCAG	alt_3966_upstream	28	26	43	19	22	27	40	28	26	28
CGGATAATGTACGCAA	ref_3966_upstream	200	176	234	239	176	200	186	183	183	182
ACTTTAGTATTCCATC	ref_3966_upstream	157	132	234	203	183	186	167	180	157	179
TTCCGCGGAAGGGTTT	ref_3966_upstream	16	12	18	11	11	10	21	11	10	5
CTAGGATGTCTTTGGT	ref_3966_upstream	65	58	55	40	52	55	59	56	48	40
TTTAGCTCACTTGCAG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CCGTATTTAAGATGTT	ref_3966_upstream	87	108	105	129	138	83	139	100	124	88
TTAATAGAGAATCTAC	ref_3966_upstream	60	39	49	57	34	52	55	53	51	39
CGTAGGTGTTTTACAG	ref_3966_upstream	11	18	22	10	10	11	10	8	26	2
TACGACACCGGGACCA	ref_3966_upstream	12	14	14	19	8	18	13	8	16	10
AATGTACCACGGGACA	ref_3966_upstream	16	7	11	24	11	6	10	11	13	13
GCGTCTGTCTGGGACA	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
ATATGTCCAGATAGAA	ref_3966_upstream	8	24	30	14	16	15	24	15	26	21
ACTCCCACTCCACTTC	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CCAGATAGAAGATATG	ref_3966_upstream	3	4	4	5	8	7	2	7	5	9
ATTATAGACAACTAGG	ref_3966_upstream	54	56	56	85	61	47	47	40	53	54
AGCAATTGCGTTAGTA	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTTTAAATTTGCA	ref_3966_upstream	90	90	121	115	99	101	98	117	109	78
AGAGTAAAGTCCTTGG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TACATTAATCACCTTC	alt_3966_upstream	7	1	7	6	2	8	6	2	4	4
CGCTCGCAGTTCACGA	ref_3966_upstream	55	37	55	50	45	48	40	41	51	45
AACACACCATAGTGAA	ref_3966_upstream	36	34	41	35	34	42	28	36	31	49
TGTTCGGTCTGACGAT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
AGATTGGTGGGGGTTA	ref_3966_upstream	11	11	6	13	5	6	8	8	14	9
CGGTTGGAAAATGTAT	ref_3966_upstream	50	48	76	48	56	43	54	49	66	32
GACTATATTGTATGTT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TACGTTTCGTGACTAG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTAATGTCTGTGCGGC	ref_3966_upstream	63	60	92	70	53	65	50	63	56	63
GGGGTCGCGTGTTTTC	ref_3966_upstream	47	39	53	42	29	61	54	55	56	56
ATATTGCTTCCGTTTC	ref_3966_upstream	16	15	22	17	17	19	24	21	18	20
ACTGATCACGTATGAT	ref_3966_upstream	4	6	7	13	12	8	21	8	9	9
TATTTTCGGCGCCAGT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTTGACCAGTGGC	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTGTGCTGTTAAT	ref_3966_upstream	87	106	124	107	87	86	87	83	96	85
TCGGGATCGGGTGTAT	ref_3966_upstream	73	46	42	61	53	63	55	45	57	42
CTCGTTATACATTCGT	ref_3966_upstream	7	10	12	8	6	8	7	8	9	10
CGTAGTCGTTACTTGA	ref_3966_upstream	28	23	35	30	31	38	29	23	35	27
TTTTTAGTAGATTGGC	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
GCCCAGTATGTTTGGT	ref_3966_upstream	7	6	7	4	8	3	7	2	9	4
GCCACACAATCGGGAT	ref_3966_upstream	30	16	35	43	23	48	29	28	25	41
CTACATCTGAGTTTTT	ref_3966_upstream	18	16	20	17	14	14	8	23	24	13
ACTTTGTGCAGCCTCA	ref_3966_upstream	32	27	34	36	19	30	34	40	38	23
CATTATGTTCACGCTG	ref_3966_upstream	36	48	60	64	53	52	53	50	52	44
CTATCTTCATCGTGCG	ref_3966_upstream	12	10	9	12	17	9	14	10	14	6
CTCTGGTGAGCCGGTT	ref_3966_upstream	20	22	16	22	20	10	10	20	19	17
CCGATCCACTCACGTC	ref_3966_upstream	5	22	9	6	20	4	27	2	36	3
CTCCTCCTCATCAGTC	ref_3966_upstream	9	19	7	10	15	14	14	17	17	14
CGTTTATCCATCTCAG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGCATGAATAGGA	ref_3966_upstream	321	286	357	324	282	295	297	300	301	270
GCCAGCCTGCTGTGGG	ref_3966_upstream	7	14	4	7	16	4	17	1	19	4
CGTTGCTTTGGCGTCT	alt_3966_upstream	8	3	5	5	7	4	11	7	7	7
AAGCTTGGGTAGGCCG	ref_3966_upstream	18	24	23	22	19	23	19	31	19	19
GAGATGCTTAAAGGGT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTAAACTCCGTCT	ref_3966_upstream	66	68	80	69	54	73	60	59	72	52
CGTCTCGGTTGTCGGT	ref_3966_upstream	0	1	1	0	0	2	3	3	1	1
CTTTGAGAGCATAGAC	ref_3966_upstream	34	27	32	28	33	24	29	19	26	28
TGAAATCGAGGTTGTC	ref_3966_upstream	15	31	31	25	17	21	16	24	36	20
CATTAGATCTTCTCAA	ref_3966_upstream	120	91	113	106	58	81	72	78	74	81
GAAGTGGGGAAGTAAG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTTTTCGCACGAT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGAGTTCCATTAC	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
GTTACGTGCCATTCGG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGACTGCGAGTCG	ref_3966_upstream	162	157	217	165	142	167	167	147	174	126
TAAACTTTTGGCCAGT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
CGATTCGTTTACTGCC	ref_3966_upstream	59	52	76	78	57	57	68	60	61	50
TTTTGCGATCGTGTGC	ref_3966_upstream	21	19	35	21	42	32	32	19	30	19
GGATAGAAATTACATA	ref_3966_upstream	88	89	126	89	87	102	93	86	89	92
GTTAATGTTCCCTGCC	ref_3966_upstream	41	34	39	47	31	30	25	31	31	25
CCGCTTGTTTTGAAGC	alt_3966_upstream	85	99	112	87	99	75	118	101	121	64
CGGTTAATGGGTATGG	ref_3966_upstream	24	31	35	38	34	38	35	40	35	26
GAATATGGTTATAGAT	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTCCAATTCTCCC	ref_3966_upstream	9	111	19	20	114	8	115	9	138	8
GGATGCAAACTGCCGG	ref_3966_upstream	50	35	51	59	46	43	50	42	45	39
ATGATAGTCTCCTAGG	ref_3966_upstream	5	3	8	3	1	10	10	8	8	4
GTGGAACACTAATCAA	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGGACACGAAGCT	ref_3966_upstream	74	42	71	56	51	54	66	51	69	58
TCTGTTTAAGCCATTC	ref_3966_upstream	14	15	23	9	17	7	5	9	16	15
ATCGCACTTGTCAGAT	ref_3966_upstream	26	18	32	33	34	32	31	29	32	27
TCGCTAACACCTATTT	ref_3966_upstream	19	9	23	21	19	24	26	31	10	21
TCCGGAAATATGGAGT	ref_3966_upstream	188	188	216	168	205	177	188	189	222	144
ATCGGACGTCAAGGCG	ref_3966_upstream	0	0	0	0	0	0	0	0	0	0
TACTGATACTGTAGCA	ref_3966_upstream	62	95	67	59	73	65	75	55	81	51
GCTGACGGGCTCGAGT	ref_3966_upstream	159	145	194	148	126	142	137	111	144	141
AATGGTAAGTTAGTTC	ref_2169_reverse	51	62	67	52	48	46	60	43	62	37
AATGCCGACTCCCACC	ref_2169_reverse	280	325	354	314	324	281	378	315	376	301
GTGTCTTCACCCGGTC	ref_2169_reverse	39	56	71	43	66	37	68	59	67	60
CTTGGAAACCTTTTTT	ref_2169_reverse	2	8	4	5	2	3	3	1	3	1
CTCGTAACTTTCGAGG	ref_2169_reverse	54	62	50	54	42	45	61	39	56	50
CCACATGCAGCGTTGG	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCAGTGCGTTTGC	ref_2169_reverse	12	31	20	14	25	6	17	12	28	12
AAATGGACTAATTTTC	ref_2169_reverse	45	44	70	57	69	51	69	55	60	47
TATATGTTAAACCTTG	ref_2169_reverse	32	34	36	24	31	24	32	26	29	20
TCTCACTTTCCATATG	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCTACGCGGGGTT	ref_2169_reverse	24	25	29	30	44	26	40	21	29	25
CGAGGCCATGGAGGTG	ref_2169_reverse	70	92	84	90	88	85	95	76	79	66
TCCTCTGGGGTTCCAT	ref_2169_reverse	133	171	167	130	192	117	198	120	195	109
GACTACAGCACACTTG	ref_2169_reverse	11	8	6	13	14	10	10	11	19	7
GTAAGTTAAGCTTGAC	ref_2169_reverse	25	33	28	29	36	31	36	37	39	21
TACGTTCGTTCCATTT	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
AATGGTGGTCGGTCGT	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGCAGTTTTCCAA	ref_2169_reverse	26	40	53	28	62	54	43	33	49	35
GCGTTCTGTTTGGTCT	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGCCATGGTGCAA	ref_2169_reverse	26	47	35	27	42	31	43	34	43	30
AGGCCTTTCGTATCGG	ref_2169_reverse	69	69	71	63	72	67	76	59	82	59
CCTATTGCTATTTTTT	ref_2169_reverse	11	9	6	16	7	11	5	8	13	7
TATCGGATGTAGTTGT	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
GCAGGGTTGCGTTAAT	ref_2169_reverse	123	148	162	147	200	140	161	129	147	118
GGCTTTTTTGATATGG	ref_2169_reverse	101	123	136	87	122	116	123	108	149	97
GCTTGAGTTTCACATC	ref_2169_reverse	48	67	63	40	73	45	63	33	80	42
ATTGGCTTCTCCTAGC	ref_2169_reverse	55	80	58	32	52	58	79	50	77	47
CATTAGCGTAGCCGTT	ref_2169_reverse	66	70	65	63	52	49	69	69	51	53
CCGATGGCATCGCACA	ref_2169_reverse	10	27	20	21	17	8	24	13	23	18
ACTGTATGCAAAGGCT	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTGCCGCATTACT	ref_2169_reverse	34	58	74	49	55	33	47	40	54	43
TCAAGCAATCCTGTTT	ref_2169_reverse	3	4	3	3	3	6	12	2	9	4
ATTTCAATGAGCTAAC	ref_2169_reverse	40	76	54	29	47	50	65	46	54	42
CTTGGTTGCTAACCGG	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCGTCATGATTTT	ref_2169_reverse	58	41	57	49	54	37	57	51	64	41
CCTCGCGCCGCACTTA	ref_2169_reverse	98	193	119	107	148	88	167	95	166	98
ATAATCGATTACACAT	ref_2169_reverse	67	102	110	104	97	75	102	83	118	89
TCTCAGGGTGTTTCGC	ref_2169_reverse	25	27	31	30	21	21	24	12	30	26
AGCTAATTTTGGCCTG	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
TATCAGTTTCGCAATT	ref_2169_reverse	89	68	85	69	75	60	86	59	93	64
AGATGGATCATGGATG	ref_2169_reverse	39	21	31	55	35	23	38	29	34	28
TGGTCATTAGCGTTGT	ref_2169_reverse	6	7	17	9	4	7	10	7	5	5
TTCGTGTACCCTCCCA	ref_2169_reverse	14	57	23	14	42	14	60	14	74	16
TGTGTTACGAAGGAGT	ref_2169_reverse	154	230	179	137	280	167	260	129	268	149
CACAATTCTTTAGTCC	ref_2169_reverse	29	43	37	35	44	42	60	41	62	25
AACATTAATAGATTAT	ref_2169_reverse	8	6	15	8	9	9	5	8	2	5
GTGGGGTTCTACGATG	ref_2169_reverse	128	176	149	147	156	130	183	90	188	105
CTTCTGGTTTTCAACG	ref_2169_reverse	101	117	153	105	119	90	116	94	114	111
TTCATCCTAACTCTTG	ref_2169_reverse	21	25	24	16	22	15	28	18	22	19
TAGTCGCGGATTGTAG	ref_2169_reverse	5	15	9	15	9	7	16	5	10	8
CTTGATCCTCGAGCCG	ref_2169_reverse	200	256	240	181	236	208	229	197	246	184
TAGTGAGGTACGTTCA	ref_2169_reverse	75	91	86	42	112	54	103	66	122	53
TTAAAGGTCGCGCATC	ref_2169_reverse	6	6	4	13	5	5	17	1	13	2
AGGCGTTTTTTAACCT	ref_2169_reverse	11	26	28	19	24	23	21	22	28	20
GATGCTTAGCAACCTA	ref_2169_reverse	25	35	24	27	34	22	42	20	35	25
GGTCTTGCTCATGGTC	ref_2169_reverse	13	24	27	17	24	18	28	11	32	15
GTTTTGAGGACTTTCT	ref_2169_reverse	4	7	7	3	2	1	3	3	6	8
TCTACCCTGAATGCAT	ref_2169_reverse	112	152	158	106	143	109	193	117	158	129
GCACTCCTGTGGACTA	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGCAGAAACATGT	ref_2169_reverse	127	179	193	159	207	157	189	158	240	132
GTCAAGTATAGCTTAC	ref_2169_reverse	29	28	19	27	37	15	27	13	40	25
AGGTTGTTCTATGGGG	ref_2169_reverse	6	13	7	11	10	3	3	7	9	12
AAACTTGGCGTATATC	ref_2169_reverse	13	14	16	16	25	7	15	19	12	16
ATCACCATGATATCCA	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
ACGTCCATTACAGCTT	ref_2169_reverse	30	35	37	31	41	37	37	31	35	36
GTGAGGCATCATCCGC	ref_2169_reverse	22	40	33	21	29	30	43	15	40	23
GTCTGCCCACTTCTCC	ref_2169_reverse	25	35	33	36	29	34	32	19	27	17
CGTTTATACGACCATT	ref_2169_reverse	184	220	212	190	212	152	227	165	213	161
GGATTCTCGTTTTTAC	ref_2169_reverse	8	12	15	7	22	4	18	13	14	11
CATACCGTCGGAATTG	ref_2169_reverse	12	13	12	9	14	16	14	4	17	17
GTTTGTTATGCTCCCA	ref_2169_reverse	14	16	20	16	31	10	21	19	22	19
TATTTCATTCCGCGAT	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
GAAGGGGTTGTTTTCT	ref_2169_reverse	59	80	73	54	55	78	74	49	71	58
TGGTTAAGTTAGGCAA	ref_2169_reverse	27	46	52	33	42	18	28	31	49	22
TTCCTCAGGGGCTTTA	ref_2169_reverse	54	60	83	45	69	53	66	60	70	53
CGAGCACTGTTCTGCT	ref_2169_reverse	0	3	5	5	1	4	9	2	10	3
ATAACCCGCTTGACTG	ref_2169_reverse	21	59	34	25	66	19	59	33	74	19
TCATTGTATTCCGCCA	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAGCACATGCCAC	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
ATTTACCAAAATATGT	ref_2169_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGTTGGCACATTG	alt_3665_upstream	63	155	63	55	138	76	130	57	169	59
TGGCGCCGGCTTAAAA	alt_3665_upstream	12	21	20	18	37	27	38	13	32	17
GATCCTACCGGGGTTT	alt_3665_upstream	34	69	46	40	79	38	84	39	83	32
AAGGTGGACTGGTATT	alt_3665_upstream	7	13	5	5	12	9	14	5	13	8
ATGGCCTTCACGGACC	alt_3665_upstream	14	29	24	12	40	18	28	13	34	15
GGCGACTTCCCAGTGC	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GTGACTTGACACTCCG	alt_3665_upstream	4	16	1	4	29	2	31	3	31	1
CTGTTGCCCCCGCGTC	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCTGTGCTTCATA	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
AGAACACATAATCTGG	alt_3665_upstream	41	84	60	46	86	42	87	39	97	42
TCATCCACCTTGCATT	alt_3665_upstream	32	62	47	26	71	20	70	20	87	24
AGTGTATCTTTACTAA	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
TAATGGCCATTTGTAG	alt_3665_upstream	4	29	8	6	9	4	22	9	15	12
CTTGTTCAACGTGAGG	alt_3665_upstream	20	44	30	37	42	29	55	26	69	45
CGGTGGTGAAGCGTGA	alt_3665_upstream	7	20	8	3	14	7	16	3	13	8
TTCCTGGCCCTGCGAC	alt_3665_upstream	12	21	23	14	23	15	25	15	19	8
CGTTATGGTATGTCTT	alt_3665_upstream	78	134	104	63	136	63	138	68	164	64
AGAGCTAGGCGGCGTG	alt_3665_upstream	26	50	19	25	46	22	59	29	57	21
TTTTAGGCTCCAGTGC	alt_3665_upstream	6	13	12	6	14	11	19	11	9	10
TCCTATGGAATTAACT	alt_3665_upstream	35	86	48	37	85	29	89	40	101	33
ACCTTCACGTGGACAA	alt_3665_upstream	47	117	51	44	112	52	119	34	130	47
GCTTCTTATTTTGTTA	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CCCCTTCCTCCATCGC	alt_3665_upstream	7	30	9	10	24	4	25	7	25	8
GCAAACTGGTTCGAGT	alt_3665_upstream	2	4	0	1	5	1	5	3	3	2
TCGAACATACGGCATA	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GAATGTATGACCACTA	alt_3665_upstream	62	135	68	70	140	58	125	54	132	47
TCACCATATCCCTGAA	alt_3665_upstream	15	44	28	27	49	17	49	18	53	10
CATGTCCGGGGCCGGT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
AATGGACGTTACCGCC	alt_3665_upstream	1	1	0	1	3	1	2	1	3	1
CTGCAATTCTCTTCTC	ref_3665_upstream	7	13	5	4	10	5	7	4	10	7
TAAGGATTGTCCAGTC	alt_3665_upstream	8	15	8	9	13	7	16	4	11	7
TGGCTCTGGTATTGCG	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTTGGAGAATTAT	alt_3665_upstream	53	60	49	52	79	38	80	35	89	58
TAGCAACACTAAGGCA	alt_3665_upstream	2	5	1	1	3	0	2	0	0	4
TCGTATGATATTGTAC	alt_3665_upstream	30	56	40	29	61	25	51	23	73	29
CTTTTGTAGTATTGTC	alt_3665_upstream	12	5	9	11	17	9	7	7	12	8
CGGCGAGTTTTGTGGA	alt_3665_upstream	25	75	31	32	54	38	68	31	70	28
ATAGTTCGGTTTTAAG	alt_3665_upstream	1	34	15	11	20	9	27	13	32	14
TCACTTTGGCTTTTAT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGCTTCTTTAGAG	alt_3665_upstream	11	17	12	7	9	18	15	10	11	9
AGCTTTCGTTGGTCAG	alt_3665_upstream	20	28	13	11	27	16	23	14	48	23
AGCCTAACCCTCATTC	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCTGAAAGACCGG	alt_3665_upstream	22	63	23	31	53	21	48	29	47	28
CATTTATGGACTAGAT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCCGAATGAATTC	alt_3665_upstream	8	15	7	10	24	10	28	10	29	9
TCTCCGCTGTCATCGA	alt_3665_upstream	75	150	96	67	120	60	149	53	151	49
GATGGCAGGCATTGTT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTCCCAGTCTTCT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTGACGGGCAAAC	alt_3665_upstream	7	15	3	7	17	4	5	3	16	4
ATTCTCTGTTCAAGGC	alt_3665_upstream	15	31	12	12	12	17	30	9	28	13
CATGGTGTAACCAGGC	alt_3665_upstream	21	59	20	28	62	17	64	22	53	15
TGATACCGACCTTCAA	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCCGATTTTAGGT	alt_3665_upstream	71	113	47	45	114	44	118	35	144	52
TGCTCAGGTAAAACTG	alt_3665_upstream	1	3	0	1	1	1	2	0	3	0
TCATCTGAGTTTTTAT	alt_3665_upstream	51	118	73	63	127	46	126	56	145	58
TAGTGCTGCTTGCTCC	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCAGTCTTGTTGC	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
TCGCAAATTCTATATT	ref_3665_upstream	0	7	5	1	2	2	1	4	0	2
GTCTAGCACATCGTCA	alt_3665_upstream	18	42	11	17	44	16	52	11	38	5
TCAAGTTCAGATCGGG	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTGGTTGTCCCGA	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTACGCAACGTGC	alt_3665_upstream	0	3	2	3	6	1	2	0	5	1
ATATAACCCTTCGGTG	alt_3665_upstream	10	17	9	12	20	12	29	16	25	4
CCTTGATGAGGTGATA	alt_3665_upstream	4	6	6	1	4	5	8	5	11	1
AAGTTACTAGCACCGG	alt_3665_upstream	14	21	11	19	22	5	22	9	21	6
TGCCCCCAGTAGGTTC	alt_3665_upstream	8	25	14	3	21	9	10	7	20	11
CAGATCCTCCCCGGAA	alt_3665_upstream	1	5	4	3	8	3	14	1	10	0
TCAGGAAAGATCTGTG	alt_3665_upstream	8	8	22	16	18	10	35	11	23	11
GCCCTTACGTGCGTAT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
TTAACTCCGGGTTGGG	alt_3665_upstream	17	33	11	23	45	14	29	18	37	13
TAAACCGGTATATTCT	alt_3665_upstream	4	8	1	3	4	4	6	3	13	3
TAGGCCCGTTCGATAC	alt_3665_upstream	7	6	1	0	5	2	8	2	6	2
TATAGCTTTGCATAGT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GCACTGTATCTTGGTT	ref_3665_upstream	91	53	93	84	65	82	68	73	67	58
CCTGGGCGCCCGCTTG	alt_3665_upstream	4	11	8	5	7	7	8	6	9	2
AGGCGTTGTAGCCCTA	alt_3665_upstream	3	9	3	4	5	2	14	4	12	4
CCACCTCGGAATCAAG	alt_3665_upstream	6	9	7	4	7	4	5	4	11	3
GTTTATGTTTCACTCT	alt_3665_upstream	10	28	13	13	25	8	26	7	17	10
TAGTCCGGTGTGCCAC	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTCGCTCTGTTTG	alt_3665_upstream	2	9	2	3	9	8	7	4	4	5
CTCACTTATGTGCGTC	alt_3665_upstream	36	95	43	38	77	33	88	25	101	30
TCAAATCTTTGAACAT	alt_3665_upstream	32	79	43	39	59	43	70	29	65	25
GACGGCATATCTTCTG	alt_3665_upstream	0	4	2	1	0	4	3	3	1	0
CACCGCTGACGCAATT	alt_3665_upstream	13	30	24	16	36	24	48	21	46	24
TGACGATTATGATCCG	alt_3665_upstream	28	69	67	55	98	47	86	51	78	40
ACAGTGTCCATGTCGA	alt_3665_upstream	6	12	3	5	10	6	15	3	16	6
CGACCTCGCATCTCAT	alt_3665_upstream	9	14	4	3	10	5	10	4	17	4
TTATCAACTCTAAAGG	alt_3665_upstream	3	2	1	1	3	4	4	1	4	0
AAAATCGCCGATTAGG	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGCCAGGATCTAA	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
GAACGCTCGGTAGATG	alt_3665_upstream	49	100	50	55	72	32	87	55	83	43
CTTCCCTGGGCTGAAC	alt_3665_upstream	26	75	45	33	71	36	94	27	92	31
TCTTTGTCTACGGTGT	alt_3665_upstream	2	23	6	2	11	18	14	8	11	3
ATTAGAAATTAAAGGT	alt_3665_upstream	12	15	7	9	15	13	27	12	32	5
GGTGGGTTCATCTCTT	alt_3665_upstream	5	3	5	8	12	4	9	8	7	1
ATGCCATTGAGTGGTC	alt_3665_upstream	0	0	2	0	2	0	0	2	1	1
GGCAACGGGAATACGC	alt_3665_upstream	15	28	18	12	40	12	27	20	36	16
GTCATTCGGTTTGTCC	alt_3665_upstream	16	27	19	9	21	11	23	9	23	9
CTCGACCGAAGCCAAG	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCACTGCACGAGT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
CGGACGCGAGGAGCTG	alt_3665_upstream	18	29	19	17	31	9	28	16	27	10
GGCCCTTCCACCGGGA	alt_3665_upstream	1	12	5	3	3	3	7	2	11	5
CGGATGCACGAATTTT	alt_3665_upstream	14	37	26	23	30	23	26	18	42	24
TCCATTTAAAATGATA	alt_3665_upstream	13	39	23	19	31	16	38	14	26	14
GTGTCCTCCCGATCCT	alt_3665_upstream	25	40	20	33	41	19	39	20	59	26
CACAAATCTCCCGATC	alt_3665_upstream	1	12	2	3	14	1	18	2	18	2
GCCCCTTCCTTTAATT	alt_3665_upstream	0	0	0	0	0	0	0	0	0	0
AACCACTTAGGTTATG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
AGCTAGATATACCCGC	alt_5744_new	18	45	21	28	50	30	69	31	45	12
TTTAATAGTGAAAACT	alt_5744_new	14	27	17	7	28	23	28	20	29	13
ACACCTCACCCACGCA	alt_5744_new	0	9	1	0	12	1	11	2	17	1
CAGGTGTGTCTATCTT	alt_5744_new	2	14	1	1	13	3	10	3	7	1
ATCTCCCAAGTTTAGA	alt_5744_new	0	0	0	0	0	0	0	0	0	0
ATCTAGGCCTAATTTC	alt_5744_new	10	10	6	11	8	1	8	7	6	5
ATCCCTGTTCGACTGG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TCTGTTAGAGTTCCCT	alt_5744_new	50	96	52	43	104	55	97	67	108	54
AGTTTTCTTGGTGGTT	alt_5744_new	7	19	5	9	16	6	14	6	24	11
GTCCACCGTTAGGCTG	alt_5744_new	7	24	7	11	17	4	18	6	18	4
AAAATTCGTTGAGGAA	alt_5744_new	10	14	4	3	18	5	15	6	23	4
TAGAGTCCTTGGTACC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TACTTGCATAGCTAGT	alt_5744_new	5	19	11	15	10	10	18	3	25	8
GTTTGTCGTATTACGT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TTTTTACGCGGGATGA	alt_5744_new	8	20	13	9	12	8	12	13	23	8
GCAAACTCGTTAGGGG	alt_5744_new	14	24	10	7	23	10	14	3	22	10
AATAGCTTACCAATTT	alt_5744_new	38	98	38	35	108	36	120	32	107	34
TCCTCGGTCACTAAAT	alt_5744_new	30	57	29	36	80	29	60	27	50	24
CTAATTCGTATGGACC	alt_5744_new	8	14	15	4	15	8	14	9	18	5
GCAGGGCTCTCGAGCA	alt_5744_new	44	90	62	36	78	43	76	34	68	37
GGGGGCTATTAGATGG	alt_5744_new	12	32	20	12	26	15	23	13	27	13
TGGTCTGTTCTTTTCA	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TCTGTGGGTTCATGCT	alt_5744_new	3	12	9	4	12	7	9	4	10	3
CTCTCTGTTAGATGGA	alt_5744_new	30	34	25	19	27	29	35	23	56	23
GCCTAGCAGTCATATC	ref_5744_new	91	272	150	141	277	124	278	116	272	136
GAATGCGCCAGATTTC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
ATCTGTCTCGTTAGAT	alt_5744_new	12	11	7	8	14	8	16	11	14	7
ATTCTGTATCGATTTT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
GGCGCGCGTGTGGTCT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
ACAGGGGGATCTGTAA	alt_5744_new	13	47	18	18	46	13	41	12	53	20
AGTCTCGACAAATGCT	alt_5744_new	17	25	12	9	31	13	35	13	28	12
CCTTCTCACGTTCGCA	alt_5744_new	2	2	3	4	14	5	10	7	11	5
AGCGACGCAAACTCGC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TCATGGAACGCGAATC	alt_5744_new	6	9	9	5	7	6	6	1	14	8
GCTGTGTTAACAAGGC	alt_5744_new	1	4	2	4	3	1	7	4	0	0
CCAGTTCTCCGAGAGC	alt_5744_new	16	16	11	11	15	12	27	14	33	4
CTTTTGGTTGTGGCCT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TATTTGACCCGTAAGA	alt_5744_new	51	95	62	40	100	47	95	41	95	32
CGTTGTATACAGTGTC	alt_5744_new	10	33	11	16	26	10	21	6	31	11
CGAAGTCCATAATGTT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
ACGATTCCTTCGACTT	alt_5744_new	68	111	102	52	97	46	124	44	144	44
CTGTGGTCATTTTTAG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
GCCCCGCCTCGACTTC	alt_5744_new	25	49	38	21	41	22	34	17	43	28
CTTGTTATGTCTCAAG	alt_5744_new	11	12	17	8	19	6	8	14	18	7
GCGTGCGATCCCAATG	alt_5744_new	83	138	87	63	131	61	146	70	134	63
TGCGGCATGTCTACTG	alt_5744_new	0	3	0	1	1	6	2	3	2	1
ATCCCTATTTTTACGC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TGGTATGGCCCTTAAA	alt_5744_new	1	4	1	3	1	4	7	0	3	2
TGGTAGCGCAGCGATT	alt_5744_new	1	11	13	10	17	9	18	5	21	6
TCTATCTGCTGCATTC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
AACATTAGGCGTGAGG	alt_5744_new	7	8	6	2	9	1	4	2	11	1
GTAGGGTCACAGCCTA	alt_5744_new	18	30	18	7	40	13	38	16	40	8
CCGACTTCGTATAGAC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
AATCTGTGTATCCAGG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
GCTGCGTATTGAACCT	alt_5744_new	1	1	0	2	1	2	2	1	2	0
ATCTTAAATAGCCGAT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
CTTTTAGTTTTGCCAG	alt_5744_new	2	12	8	7	14	7	9	8	13	4
TGTTTCGTGGTCATAG	alt_5744_new	4	5	3	0	2	1	7	5	8	4
CACCTTACGCAAACTT	alt_5744_new	5	14	6	6	15	4	16	3	9	1
ACGTGCGCCAGTCGGG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TAAACCCGTGTGTTTG	alt_5744_new	26	81	40	25	80	33	93	27	87	34
ATATATACTCGGCGTT	alt_5744_new	13	18	10	9	12	5	13	9	10	2
CGGTAGGCTTTATTCT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
AGATCTTACGTCATGT	alt_5744_new	2	8	8	3	10	7	9	8	7	6
CTTTGCGGCTATAGGG	alt_5744_new	16	30	18	18	30	23	31	20	25	13
CATTGTACCGACACGT	alt_5744_new	7	19	9	5	19	5	10	7	23	8
GAGACATTAATTCTGG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
CTCAAGTTTGGACGAA	alt_5744_new	0	0	0	0	0	0	0	0	0	0
TCGACACATTTATGGC	alt_5744_new	3	3	3	0	5	3	3	4	2	0
GCTCGGGGTAGAAAAG	alt_5744_new	17	38	32	22	51	25	38	23	46	20
GCACAATCTACGGGTT	alt_5744_new	12	19	27	15	30	13	29	15	27	11
TGTCCTCCGACTCAGG	alt_5744_new	56	84	71	60	86	63	102	56	104	64
GCCCAGGAATGACCGG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
ATGTACGCCCTGACCT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
GATCGTAGGACAGCTT	alt_5744_new	41	71	48	41	77	37	88	48	79	40
CTGCCACCTATGGAAC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
ACAATAGGCTGATATT	alt_5744_new	53	138	96	71	138	58	158	64	174	62
AGAGTTCTCGCTCAAA	alt_5744_new	8	16	10	8	18	10	33	10	33	6
CTGAATCATCCGACCT	alt_5744_new	1	1	0	0	1	0	0	0	0	2
CAGGAGCAATTTGGCT	alt_5744_new	13	28	13	15	16	12	31	10	22	10
TTATGCTATTATCTTG	alt_5744_new	0	0	0	0	0	0	0	0	0	0
CCTCTGAGTAACTTCC	alt_5744_new	0	1	0	0	1	0	2	0	0	0
CGCCCTCGCTTTACCT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
CTCGGACACCGGATTA	alt_5744_new	10	16	9	9	21	12	18	10	28	11
TCACCTGTCAAACGTT	alt_5744_new	7	17	7	10	15	15	14	4	22	5
GAACGTATGAAGATTC	alt_5744_new	1	6	3	7	5	4	8	4	9	4
TCCCGAATCCCAACGC	alt_5744_new	24	115	34	31	104	28	94	31	122	27
AGTCCCGGGCCGGGGG	alt_5744_new	6	10	2	5	12	4	3	0	5	2
GCGGTGTCGTATCGCA	alt_5744_new	11	30	17	22	39	17	42	17	24	13
CTCACTGTAATTTTTT	alt_5744_new	17	25	23	14	21	13	28	13	23	10
GTTATCCCAATGTTAG	alt_5744_new	3	10	2	1	13	4	5	2	13	3
GCCGTCCTATCGTACA	alt_5744_new	0	0	0	0	0	0	0	0	0	0
CCCATTCTATTCTGGT	alt_5744_new	4	22	13	15	35	17	43	12	40	11
GCGCTTTACTTTGGTG	alt_5744_new	29	79	31	42	66	42	77	25	91	41
CGTGGTCTAGACGAGT	alt_5744_new	0	0	0	0	0	0	0	0	0	0
CTTTGGCTCAGACAGG	alt_5744_new	9	8	6	9	15	5	14	2	16	8
GTCTATCTTGAACGGC	alt_5744_new	17	33	15	8	30	19	27	16	26	13
ACACGATTCAAATCGC	alt_5744_new	0	0	0	0	0	0	0	0	0	0
GGCCCCTGGAGAGTGG	alt_5744_new	17	35	26	11	29	15	26	20	33	18
GGGCGGCCGGAGCCCA	alt_5826_new	7	8	4	6	11	0	9	2	3	0
GGTTGCAGGTTTTGCA	alt_5826_new	12	15	4	8	14	9	14	8	16	8
GTGGTAGAGTAGCATC	alt_5826_new	18	17	14	12	26	14	21	6	18	17
CATTACCGTTAATGCA	alt_5826_new	5	10	11	13	22	15	17	13	20	12
GTCCGTGTGTCTATGT	alt_5826_new	15	33	24	21	22	22	26	21	38	19
CTGTGCGCGTATTTAT	alt_5826_new	7	14	13	8	13	7	12	5	14	5
AGTAGGCTTGTCCTAG	alt_5826_new	10	27	17	9	26	10	17	13	26	12
ACCGCTCTCCTTCCCG	alt_5826_new	0	2	0	0	3	0	3	0	0	0
TGCGTCATGGGCTCCC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GAGCGCATGCTAGTGC	alt_5826_new	4	11	7	8	3	3	8	4	4	3
TAGAGTTTATTACTTT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TCATTAATCTCCAGAT	alt_5826_new	51	56	45	38	44	39	85	41	73	44
GCTAGAATTTCTGGCG	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TTCCACTTGAATACTT	alt_5826_new	17	20	14	12	12	16	20	9	26	10
ACGGGCCACAGACATA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CAAGGGTGTATTCAAC	alt_5826_new	0	5	3	0	3	4	3	2	4	1
GTATACTGAAAAACCA	alt_5826_new	8	26	23	14	31	18	29	26	35	10
ATATGCTCCCTTAGGG	alt_5826_new	31	38	23	30	40	24	50	25	49	20
GCTATTGGTCTCAATG	alt_5826_new	4	8	9	3	3	6	9	6	10	2
TGGGGGACCCTTGATT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GCGATCACCCTGGGTT	alt_5826_new	6	17	12	12	11	7	11	11	14	13
GTCTGGTACCTCCAAA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CATTTAATAGGGGAGT	alt_5826_new	62	125	76	66	101	80	96	59	128	57
TCTCGTTTTTTTCATG	ref_5826_new	96	157	138	88	146	92	164	67	164	106
GGCAATGTGTTTTTTT	alt_5826_new	18	50	37	34	61	29	67	23	48	27
CATCGCTATCGAAAAC	alt_5826_new	5	14	7	7	10	5	7	5	12	0
TTCGGATTCCCATTTC	alt_5826_new	8	8	10	8	8	5	7	5	13	6
CCGCTAACTCAATGTT	ref_5826_new	44	96	49	34	97	48	76	43	98	49
CCAGCTTATCTTTGTC	alt_5826_new	61	174	85	64	191	56	199	67	175	59
GGAGTTATTTGGGCGA	alt_5826_new	60	96	59	51	110	64	104	60	115	61
GTCAAGTTGGGCTCAG	alt_5826_new	4	18	6	7	16	15	17	12	11	8
AATACATGCAATTATA	ref_5826_new	61	74	69	54	66	49	105	49	123	53
GTGAGCTTTCGCTATA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CACATTCTCTGAGGCA	alt_5826_new	9	12	8	12	24	16	31	12	23	8
TGTCCTTTGCCTTTTC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
AAAACCCTCTGTTGCC	alt_5826_new	29	30	29	23	44	21	50	17	52	27
TTTATTAGTTTGTTGT	alt_5826_new	35	68	49	40	71	48	63	45	90	36
CCCACTTTGGGCCTTG	alt_5826_new	44	75	35	35	72	35	101	20	97	22
TCCCCATTCCCACGCG	alt_5826_new	28	47	31	34	28	24	46	26	38	17
CATCTATTATGTACTC	alt_5826_new	26	29	26	22	36	25	26	27	32	15
TGGAGTCGCGTACCGT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
ACCTGATTCAAAGGCC	alt_5826_new	25	36	22	20	35	17	19	14	34	17
AACAAATCGAAATACC	alt_5826_new	50	81	40	43	89	51	52	24	72	52
GCAGTGCGACATTTAG	alt_5826_new	30	77	52	61	81	37	75	41	59	19
TTTGGGACCATTAATT	alt_5826_new	50	53	46	47	61	37	67	45	77	26
GGCCAACCTGTTTAAC	alt_5826_new	14	48	22	24	54	29	62	23	45	25
TTGGGAGGTGGCCTCT	alt_5826_new	66	110	69	62	124	58	116	54	104	57
TGTCTGTTCATACTTC	alt_5826_new	0	4	2	0	0	0	3	0	1	0
TGGTATACTGCCCACA	alt_5826_new	15	24	8	13	23	6	19	18	24	10
CGGTAAAGTGCCTATT	ref_5826_new	9	16	13	14	23	12	15	7	20	10
ATCTGTAATGTAATCC	alt_5826_new	7	6	6	4	10	3	4	3	10	3
GTTTCTTTTAAGACAT	alt_5826_new	2	10	6	6	5	10	12	5	14	3
TAATGCCGTCGTACAC	alt_5826_new	34	102	49	46	105	51	139	28	119	33
CAATGTTCTCTCGAAG	alt_5826_new	52	75	80	36	107	60	72	45	81	41
AGGCGGAGTCTCGTCT	alt_5826_new	9	17	7	7	17	7	6	2	20	4
TTCGCTCATCACGATC	alt_5826_new	9	11	7	9	11	10	15	4	10	6
GATAGTTGAAATTGTT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GAACGCTTTTGTGCGC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GAAGTCGGGAATATAC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GGTGATCTGGCCGCAT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GTTTCGCTGGCAGCGA	alt_5826_new	3	15	7	2	13	7	16	3	16	4
GCGGGGGTCCTCTGAT	alt_5826_new	0	1	1	1	1	4	0	1	1	1
CGCTCCAATGGTCTCC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TCTGTGCGCATACAGC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TGTGCATTTTGTGACA	alt_5826_new	12	25	13	8	29	10	31	14	30	11
GCTCTTAATCACGAGG	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GCTCTTAATCACGCGG	alt_5826_new	456	608	597	466	581	426	645	410	642	397
ATCAAAGCATCGGCTT	alt_5826_new	6	4	1	6	1	4	6	0	8	2
GCCGTCGAATGCTCGG	alt_5826_new	23	64	13	16	58	23	64	14	64	14
TAGGTGTGGCGTGGCA	alt_5826_new	5	6	5	4	8	1	10	7	6	6
CGCCATTGGAGGTCTA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
ACGATTTGCGCCATCG	alt_5826_new	22	38	38	35	29	26	42	30	33	26
ATTAGGGGTTATGGAG	alt_5826_new	9	26	24	12	28	22	19	12	24	17
ATTGCCACTGTTGTTA	alt_5826_new	19	63	31	23	64	12	95	11	77	19
ATCAATTGTTCTAATC	alt_5826_new	16	46	40	32	40	38	29	33	50	23
TCCGCTTCCTACTACA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GGACCTGGAGCCCAGC	alt_5826_new	45	82	41	37	63	32	71	43	85	35
TTTATTGAATATTTAG	alt_5826_new	26	69	40	24	43	32	36	27	45	29
ATAATGTTTCTCCTAC	alt_5826_new	29	38	38	31	42	28	50	20	55	19
CAGCACTTCGACATTT	alt_5826_new	1	9	3	0	7	1	8	1	9	2
CTTGATTAGAATCATG	alt_5826_new	38	56	45	31	64	31	76	37	65	36
AAAGACGTTGGGGCAC	alt_5826_new	8	11	11	10	17	6	11	3	10	6
GGTCGCCCGCGATTTC	alt_5826_new	41	89	59	44	89	55	95	43	97	39
GGGCAGTATAAAGCTC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
AGAGGGCCGACTGGTC	alt_5826_new	21	61	25	27	48	42	62	27	53	26
ATGTAGAGTTTATTAG	alt_5826_new	9	8	6	4	10	6	4	5	14	5
AAGTTATCTTTGCTGC	alt_5826_new	26	39	36	19	30	37	29	18	39	32
GAGATTGTACTGCTCA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CGAATTGTCAGTTCGC	alt_5826_new	72	117	86	75	116	65	123	53	139	58
ACAATTCCAGATCGCC	alt_5826_new	64	100	67	74	111	63	100	67	102	62
TAATGCAAGCGCCTGA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TCAGCTTGGCGTATCT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
AGAGGATGGTAAGGGC	alt_5826_new	23	39	21	24	40	22	35	26	44	15
CCAGTTCAGCATCGAC	alt_5826_new	12	13	9	11	16	7	23	5	15	5
GAATACACTCGATTTG	alt_5826_new	27	54	22	21	40	26	62	23	64	24
CTTGAGTCCACCTGGT	ref_5826_new	7	18	13	6	19	7	22	7	17	11
AGCTATGTGTCCAGTT	alt_5826_new	15	21	9	13	11	13	26	5	24	7
CAGTACTAATCACATT	alt_5826_new	2	11	4	2	10	1	7	7	3	1
GGGGATACGCTGGGAT	alt_5826_new	31	32	28	22	22	20	32	12	38	28
CCGGGCTAGGACTTCA	alt_5826_new	10	17	8	12	12	8	23	10	17	7
AACACCCCCGTTATTA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CCGCCTTGGACCTTAA	alt_5826_new	5	21	7	5	15	15	21	3	16	4
CCTCGCACTGAACTTT	alt_5826_new	54	77	71	45	72	63	90	60	108	59
TCTGTACGGAGTTTAC	alt_5826_new	34	54	42	32	48	52	66	45	66	36
GTGGCAAACATCGTTA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GCATGACAGTGAGTTC	alt_5826_new	81	142	81	58	136	85	143	60	140	64
GAGCGTCTGGCACGTT	alt_5826_new	75	147	95	73	135	81	128	67	150	67
GGCTTTATCGGCCCCT	alt_5826_new	12	10	13	10	15	15	19	16	24	15
TTGGGATCCAGGAAAA	alt_5826_new	93	159	105	86	145	90	173	97	170	81
TATAGCGATTTGCGGC	alt_5826_new	6	12	14	7	8	7	10	4	10	3
CTTATTCGGTATATGG	alt_5826_new	18	19	17	8	37	10	23	16	27	20
GTTGGATACACGCATC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TCTTGACCGGTAGGAA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CGATCGGGTACCATAA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GGACAGATGGCAGGCG	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GAAGCATGCGGATATA	alt_5826_new	20	49	37	29	45	36	47	28	40	28
AACGCGACCTCGTCAA	alt_5826_new	11	3	5	12	15	4	12	7	3	5
ACACATCCGTCCTTAG	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GGAATCTACCGGCGTA	alt_5826_new	14	38	18	16	35	12	34	29	40	22
TATTTTCTCTCGTTCT	alt_5826_new	5	5	8	4	5	2	10	5	1	3
GCGGGGAGCGCCCGTG	alt_5826_new	6	4	8	7	15	7	11	6	6	3
TAGTCGAGACATATAC	alt_5826_new	13	14	13	8	18	5	6	6	19	9
GGAATTTATTCCGTAT	ref_5826_new	44	48	60	36	61	35	74	40	67	40
GTAAATTGTCCAAATC	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CGTTTTAGGCGCATTG	alt_5826_new	18	26	19	13	29	11	43	13	29	15
AGGGGGCCTTGCGTGA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TGGCAACGGCTCTTGG	alt_5826_new	58	73	48	40	92	49	75	46	82	37
GGGGCCTAATTTGATT	alt_5826_new	9	19	16	10	20	8	23	16	25	11
TCGATGCCTTTGATCG	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GTAATATTGATACGCG	alt_5826_new	71	112	95	54	114	81	98	67	104	49
TGTACTGTCAATCGTG	alt_5826_new	8	26	10	5	23	12	26	6	20	9
CCCTGAGGGTCCTGTT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
AACTGCGTTGCATCGT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CTACTGTCGATATCTA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CGAACTGACCGAGGTG	alt_5826_new	42	63	41	41	77	37	59	48	64	26
TGATTTCATGACACAG	alt_5826_new	8	14	5	9	10	6	5	8	5	2
AGGTGAACCGCTCGGC	alt_5826_new	82	114	95	81	136	79	140	63	148	79
TGGTGCTCAGCGCACG	alt_5826_new	13	11	8	7	19	4	29	5	10	11
AGTTGTTAGGCCTGAT	alt_5826_new	25	38	30	22	37	18	35	24	31	16
ACTACTGCCGTTAACC	alt_5826_new	37	42	61	34	63	36	49	26	55	34
TCTCAGGGCATCCCAA	alt_5826_new	0	0	0	0	0	0	0	0	0	0
TGTTCGGACGCTTAAA	ref_5826_new	32	71	41	44	75	40	74	36	56	27
AAATCAGTGGTTTGGT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
CTAGTTTTTGCGCTGT	alt_5826_new	0	0	0	0	0	0	0	0	0	0
GTTCCTATCAGTGTGA	alt_5826_new	12	27	18	14	31	13	23	6	24	7
GATTGCGAGCAAATGC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTTACTCCGGTTTTGG	alt_1834_fdr	17	67	26	30	58	16	58	26	76	24
GACGGTTCAGTGAATC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCACTGGCGCGGC	alt_1834_fdr	17	6	15	17	6	10	19	13	17	6
AAAACCACGAAAACAA	alt_1834_fdr	35	21	36	40	21	28	20	29	15	38
TGTGTCAGATGAGCCA	alt_1834_fdr	12	7	12	10	8	5	10	7	4	14
CTGTGGTAGGGTATTT	alt_1834_fdr	19	18	32	18	26	23	22	25	15	22
ACGTTAACCTCACTAT	alt_1834_fdr	49	49	50	56	49	49	37	58	35	62
TGTTCTGTCCACGTGC	alt_1834_fdr	14	5	10	5	7	10	10	8	9	14
GAACTGTTTCATGGAC	alt_1834_fdr	77	100	118	99	103	81	87	78	85	86
ACCGTAAGGCCCATGT	alt_1834_fdr	59	39	48	51	35	45	45	43	51	47
AAGCTGAATTTCAATC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGTAAAGATATAGTCT	alt_1834_fdr	30	28	47	39	23	34	24	30	36	39
ATTCTGACCCTTCGTG	alt_1834_fdr	1	4	3	8	13	1	5	3	12	2
ATAACCAACAATTCTT	alt_1834_fdr	41	34	51	37	42	40	40	35	41	21
CGCTCAGACGGGAGGT	alt_1834_fdr	6	3	10	6	9	7	10	10	5	10
GACTTGCTAGATTCGT	alt_1834_fdr	37	22	55	55	29	40	25	43	39	43
CCGAACTACCCGGGGT	alt_1834_fdr	6	10	10	7	4	10	7	7	5	5
CCTAGAACCGATTAAA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTGCTCTTCCTCA	alt_1834_fdr	31	26	34	24	28	26	25	17	31	25
CGGTTTCCGCACCATT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTCCACTCCGGGCAAC	alt_1834_fdr	1	2	7	3	4	5	8	2	4	1
TCACAGAGCAATTGTC	alt_1834_fdr	16	21	24	23	20	16	15	17	16	11
AGGTAACCGATATTAC	alt_1834_fdr	50	18	54	48	31	40	37	44	40	49
TAGCCAGAGTCGCTGC	alt_1834_fdr	83	67	110	90	70	79	63	74	65	54
TTATCCTAACTAGGTC	alt_1834_fdr	23	20	24	19	18	27	21	14	21	24
TCCCTTACGCTTACGA	alt_1834_fdr	18	5	12	11	10	14	11	10	5	8
GATGTCCTGTATTGTA	alt_1834_fdr	62	45	68	62	47	61	42	61	53	61
TGAATTTTTGCCCACA	alt_1834_fdr	74	54	84	61	56	78	58	59	56	70
TGCTCTTGCTGGTCTC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGGTTTAGCGCTT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCAAAGCCAGAT	alt_1834_fdr	6	12	29	18	13	23	15	24	15	9
ATGTACCGCATTTACA	alt_1834_fdr	39	24	32	18	21	31	20	32	36	36
GGTTTTGTTAGTTAAA	alt_1834_fdr	24	20	39	37	15	29	28	30	27	22
CGCATGTTGCTTTTTT	alt_1834_fdr	144	75	189	168	90	148	104	139	102	142
GGAAATACTTTCACAT	alt_1834_fdr	2	1	5	14	7	4	7	3	0	3
ACGGTGATTTGGTTTT	alt_1834_fdr	9	8	8	5	2	13	7	8	2	13
CTCTGACAAACATAGA	alt_1834_fdr	10	11	4	11	12	6	11	8	6	15
CAGGTACCAACTGCTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTAATCTTAACGG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GACACCACATGCGAAT	alt_1834_fdr	28	20	33	25	21	22	22	22	19	18
CATATTGGGAAGTGAA	alt_1834_fdr	0	0	3	0	2	1	0	1	0	0
TCACTGCGTGTTTTCA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGATCTCCGTCTCTGC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
ACGGATTTCCTCCCGT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TACGTCCGAACGTAAT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCGATAATTCCCTAGC	alt_1834_fdr	14	15	32	28	30	24	10	18	17	18
TAAACTGGAATAGTTA	alt_1834_fdr	46	22	45	37	32	37	28	41	41	34
AGGCATGCTCTTGAAA	alt_1834_fdr	35	29	24	28	34	35	31	29	27	27
TTTCCTTTTGGAAATC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TACTTCAGCCCATGTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCTCGGGTTATTA	alt_1834_fdr	35	35	62	38	35	45	43	43	37	24
ATGTAAAATCCGTCGA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGAATCCATCTTT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGCCGTGTTGCTC	alt_1834_fdr	27	23	38	31	22	18	20	15	19	23
TCACAGTCGACGATGC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCGGGCGGCCTA	alt_1834_fdr	25	21	26	40	10	27	17	23	16	27
AACGAGACCTGCTGCG	alt_1834_fdr	26	13	29	21	13	23	14	34	19	25
ACTCAGCAGGTTTGTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGCGAGCCCAAGTACC	alt_1834_fdr	3	3	12	6	7	4	6	10	6	12
GGTTCCCTATCGCTTT	alt_1834_fdr	52	43	68	71	56	59	42	69	53	41
TGCTTTTATTTCCGCG	alt_1834_fdr	205	146	209	204	118	184	124	171	152	144
AGCGCCACGTCGCTAA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCCTAGGTAGCT	alt_1834_fdr	41	24	41	23	18	17	30	38	24	32
GCCTTTCCAATTTCAC	alt_1834_fdr	43	39	48	57	40	49	32	48	25	44
TACTTCGAGCGTAAGG	alt_1834_fdr	7	13	11	9	3	8	8	9	5	14
TCGGCCTTCTTTTAGT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGCCTTCTGAGGT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTCAAGGTCAAGC	alt_1834_fdr	204	168	234	182	173	162	157	171	208	151
CAAAGGCGCCTAAGAG	alt_1834_fdr	119	77	148	122	109	98	114	118	109	86
TTCTCCCGCGCTGACA	alt_1834_fdr	17	17	15	17	20	9	19	11	26	10
CTCTTATAATGCATCT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGAACGAGATGTA	alt_1834_fdr	104	76	139	123	78	100	75	104	82	108
CGGGGACCCACGCCCT	alt_1834_fdr	78	43	90	75	61	64	55	60	58	56
GTGGCCTATACTACTA	alt_1834_fdr	67	71	74	56	68	66	85	65	67	58
ATGCGGGGCTCTCACC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCTGTCTAGGATG	alt_1834_fdr	37	37	40	33	34	39	32	30	35	36
TCGACTAGGATAGTAA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTATTATCCACAT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCTAAATGCAATCCGC	alt_1834_fdr	40	26	72	63	39	45	43	38	41	44
CTTAGAATCGTGGTTT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTAGATGTGGCTA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAAGCAACTCATA	alt_1834_fdr	18	12	19	23	7	25	12	17	7	16
ACGGTTATCCTCCTAT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCAAGCAATGCA	alt_1834_fdr	80	33	66	64	49	64	40	47	40	56
CGGAAGTATTCTCAGT	alt_1834_fdr	50	41	72	55	47	61	49	66	56	48
TCGCGCATATCTCGTA	alt_1834_fdr	6	18	8	12	3	9	7	5	7	7
GCCATGCAGCCAGCGG	alt_1834_fdr	29	28	35	34	21	30	16	34	13	25
TTATGAGTCACGTTCT	alt_1834_fdr	87	55	80	64	35	71	59	65	43	43
AAGTTCTGGTCGAGAT	alt_1834_fdr	57	42	56	55	51	53	30	39	33	26
GTTTACAGCTTGGCTC	alt_1834_fdr	21	10	26	20	15	22	13	9	11	13
TATGAAAATCAAGGCC	alt_1834_fdr	23	5	25	19	13	24	8	26	23	19
TGACCCAGTTATACTC	alt_1834_fdr	39	33	47	41	48	42	37	40	46	28
TCTCCTTCCCTGGAAG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGTGAAATGTTATTTT	alt_1834_fdr	21	21	32	32	19	25	21	24	23	25
ATCGCACACACCCTTT	alt_1834_fdr	0	0	1	0	0	0	0	3	1	0
GGCGCTGGAAATTGGA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTACTGGGGGTTCTTC	alt_1834_fdr	70	23	79	62	52	44	44	49	43	58
ATTCTGTATGAACTTC	alt_1834_fdr	23	9	25	20	17	19	17	18	15	21
ATGAGGGGATGTCGTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTGTGGTAAAGCC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
AACTCACTTTTTACGA	alt_1834_fdr	54	37	57	66	36	52	36	57	43	49
ATCGCCACATTGGTAA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTACAGTCTCCTGGGA	alt_1834_fdr	11	5	13	14	9	15	10	15	9	10
TGTATTTCAGTCCCTT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CTAAATCATTTTAACG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TATGAGCGTTCTTCGG	alt_1834_fdr	45	31	42	39	22	22	40	40	30	35
CTTCATGCTCTGGGTG	alt_1834_fdr	359	283	366	350	264	341	217	324	306	281
TATGCGGCCATTGTAG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
AACGGTCTCACACAAG	alt_1834_fdr	12	6	14	15	8	8	4	11	11	11
CTTTAATAGTTTGTTA	alt_1834_fdr	14	6	11	8	8	8	6	11	8	13
TATTTCCTGCTCTGAT	alt_1834_fdr	27	17	34	27	17	32	28	31	23	27
ACATCCGTCGTTCACT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTCTAATAAACTGGCG	alt_1834_fdr	31	27	35	29	25	29	22	20	22	21
GCTAGGCCTGTACCAG	alt_1834_fdr	11	14	13	7	10	4	12	8	15	3
TATTCTTACGCCGTTG	alt_1834_fdr	3	3	5	3	0	1	3	6	2	3
CGACGTTGTCTCTGTT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGCCTAGTTCTCG	alt_1834_fdr	81	52	80	87	58	67	51	63	47	74
CTGGCCCAGCGGTTTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTGGGCTGACAAC	alt_1834_fdr	6	3	9	26	6	9	10	7	7	10
GAAAGGCCAGTAGCAG	alt_1834_fdr	86	66	103	85	65	103	63	80	64	82
TAGCTCATGGGTGCAG	alt_1834_fdr	32	26	33	30	14	26	27	28	21	14
CCGATTGCGACTGTCC	alt_1834_fdr	23	26	26	21	37	12	32	16	35	18
GACATGATAATCCTCC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCATGCCCTGAA	alt_1834_fdr	71	51	81	88	44	75	43	67	51	72
TCATAGCGACATGGCC	alt_1834_fdr	119	78	166	156	82	136	117	153	81	135
ACGCTAGACCCTTTGA	alt_1834_fdr	36	32	37	29	23	33	27	45	34	33
GCTAATAGAGGTTCAC	alt_1834_fdr	77	54	93	73	68	76	71	70	85	77
CATGGAGGGATCTTGA	alt_1834_fdr	5	1	9	15	11	8	6	4	6	9
ACGGCTCGCGTAAAGA	alt_1834_fdr	39	25	48	40	29	22	26	31	33	35
GACGGTGCGCGAGTAC	alt_1834_fdr	53	27	76	59	30	49	47	45	54	49
TGGCGGGCGTTTATGA	alt_1834_fdr	17	11	28	26	14	26	7	27	21	24
GTTTAGTTGCTTGTTT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGGTTTGTTGAAT	alt_1834_fdr	4	15	10	4	33	1	28	3	25	1
ATGTTGCTACCCTGTC	alt_1834_fdr	60	46	58	49	34	44	32	51	46	47
ATCGCCGCATTGGTAA	alt_1834_fdr	138	150	158	119	169	113	148	142	143	114
GTTGAATTTGGAATAC	alt_1834_fdr	25	14	23	13	10	15	15	15	18	16
TGTACGGTTGTATAAA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTGCTTCATCAGG	alt_1834_fdr	101	75	114	88	81	102	70	86	71	100
CCTGTCATCAATTTAG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GCGAGGCGGCGAGCTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTTACGTATCGCT	alt_1834_fdr	23	13	37	32	17	22	18	21	13	12
CGTCCTTACATCTCGA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CGGGCTCATAACAATC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCAAGCTCAGCAA	alt_1834_fdr	63	54	63	64	44	64	56	48	46	51
TGCGCTTTTAGTCCCC	alt_1834_fdr	61	60	76	72	58	60	59	67	57	68
CAGATTTTGGGACACA	alt_1834_fdr	10	11	15	17	13	9	12	7	21	10
CCGACCGCCCTAACTG	alt_1834_fdr	13	18	18	22	14	16	19	14	17	22
GTCAAGCATACGTGCA	alt_1834_fdr	14	11	25	15	15	9	10	11	9	8
TGTCGCAGGTGAACTC	alt_1834_fdr	14	7	12	14	2	9	7	5	10	8
AGGTCAGCTATATTTA	alt_1834_fdr	35	28	27	22	25	20	25	27	36	17
AATGGATGGTTTCGGA	alt_1834_fdr	11	5	8	8	2	6	6	11	5	11
GGGCATTCTACCGTTT	alt_1834_fdr	46	33	42	50	47	32	26	36	41	46
ACTCTCGTAGAAATGC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTATATTTGGCTC	alt_1834_fdr	56	41	72	53	48	62	51	55	66	54
GGAACTTGTCATAAGG	alt_1834_fdr	109	83	151	107	83	93	92	111	97	105
ATCGGTAATAATTTAG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTTCTATTTAAT	alt_1834_fdr	50	29	59	49	22	43	34	35	31	44
CCCAGGCTCACACTGA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTACCTCAGGTTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GACACCCCTATTCGTT	alt_1834_fdr	36	30	25	20	13	16	17	14	10	21
TCCGTAGTCTATCCTA	alt_1834_fdr	6	17	11	3	13	10	10	5	15	7
TGGGCACACCCCTAGA	alt_1834_fdr	145	106	165	149	136	112	136	123	163	132
TGTGTCTTCCAGCGGG	alt_1834_fdr	46	21	61	62	26	39	36	66	32	42
TGTGGCATCGCTCGCG	alt_1834_fdr	127	90	166	146	67	111	96	113	104	135
TATTATTGTCAGCGGG	alt_1834_fdr	88	84	141	115	78	112	79	99	94	120
GCAAAGTGTTCTGCGA	alt_1834_fdr	38	22	53	39	19	32	28	27	17	29
GAGTAGTGTGAGACTG	alt_1834_fdr	37	25	33	32	32	35	30	29	28	29
CCAGTCTCTATACCCC	alt_1834_fdr	8	20	14	15	23	2	26	10	25	10
AAAGGAACGGGTGTTC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCGGTTAACCAT	alt_1834_fdr	38	55	53	40	77	40	58	44	60	40
TTCGTCTCGGTCTTTT	alt_1834_fdr	14	9	26	13	10	8	14	8	13	4
AGCTACAAATATCGTT	alt_1834_fdr	49	34	63	48	42	50	43	63	46	59
TAATACTTCCGGGATA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CCCATTTTCCCGCCTA	alt_1834_fdr	47	32	79	41	33	49	23	35	45	33
TGTTAAACTCCTTCTC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTACTCCCATTGC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCCTCATGGTCGC	alt_1834_fdr	4	4	16	4	2	10	4	4	1	3
GCAGCCAGATAGTGTG	alt_1834_fdr	39	46	59	48	57	38	58	43	71	51
CGTCCGGGTCGAGCGC	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
ATGCAAAGTCGTTATG	alt_1834_fdr	9	6	16	5	3	7	7	14	11	8
TGGGTCTTACCCGTGT	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CATTAGTGGTGATCTC	alt_1834_fdr	50	30	55	48	25	35	35	42	24	34
CTTGCCGACACTGATA	alt_1834_fdr	93	87	107	101	97	87	86	72	98	75
GGCGCTAGTTTCGAAA	alt_1834_fdr	65	53	75	50	48	61	48	53	69	67
ACTAATGATTCGTTTT	alt_1834_fdr	6	3	11	8	7	5	4	8	3	5
GCGAGTATGTTCCTCA	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCTCCGGATGCGT	alt_1834_fdr	31	26	45	56	35	30	23	29	23	26
TTATTTGCCCAATCTG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
TACTCGTAACTCCATT	alt_1834_fdr	44	19	41	46	28	31	23	30	38	41
CTTCGTACAGTCAGTG	alt_1834_fdr	9	6	18	8	11	5	3	12	10	2
GGGTGGCTTTGACCTT	alt_1834_fdr	13	12	21	21	8	12	11	11	8	18
TTGGCTAAGTACGCGG	alt_1834_fdr	0	0	0	0	0	0	0	0	0	0
GTGGACCGTCCGACGT	alt_1834_fdr	5	4	5	3	3	4	4	4	5	0
AACATGTCACTCATTC	alt_1834_fdr	47	62	53	31	44	40	65	25	59	36
GAGATGGATTGGCGAT	alt_5492_fdr	26	48	45	37	42	36	45	37	51	36
ATTAATCTCCTTCGTC	alt_5492_fdr	4	4	8	8	6	6	5	4	6	6
AGGGTGGAGATTTCTT	alt_5492_fdr	9	19	20	21	15	17	23	15	34	13
GCAGCTTGATCGTCTT	alt_5492_fdr	20	30	27	28	19	26	26	25	20	14
CCGCTAATGTTTCACC	alt_5492_fdr	5	15	11	20	22	9	19	9	22	8
ATTACCGCATCTATAC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTTCGCACATTT	alt_5492_fdr	18	25	25	14	12	10	27	12	26	9
TTGTCGCGTGTTAAAA	alt_5492_fdr	0	1	1	0	1	1	2	0	0	1
ACCGGCTTCTGTCCAC	alt_5492_fdr	16	17	20	11	17	17	22	17	22	13
CATGATAGGCCAGCGC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCACCTATTGTCA	alt_5492_fdr	3	18	8	7	24	7	19	9	27	4
TCATCATCTACTTGTC	alt_5492_fdr	2	12	4	6	5	7	8	3	3	7
CTAATAGATGGCCCGG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TACGTATGCTGTAGCG	alt_5492_fdr	10	12	18	14	17	16	9	10	14	5
TCGCAAGTTTAGAAAG	alt_5492_fdr	44	80	69	74	71	75	77	60	71	56
CCTACGCAACATACCC	alt_5492_fdr	30	34	42	45	39	23	38	29	28	36
CGACTTTCATTCACTG	alt_5492_fdr	67	74	87	64	72	64	90	52	89	57
TGCCAATTAGGTTTCA	alt_5492_fdr	216	315	301	260	281	222	309	233	297	217
ACCCCGTATTCTATCG	alt_5492_fdr	52	41	46	35	50	37	39	41	41	32
CCAAGTATTTTTTGAG	alt_5492_fdr	10	8	13	11	6	9	5	4	9	8
GTCTAACCACTGTTTC	alt_5492_fdr	17	27	30	15	21	18	13	15	21	15
CCGATATTTGCCTCAA	alt_5492_fdr	50	47	45	62	54	41	50	62	66	39
CTTCTGAATACTTCTG	alt_5492_fdr	20	19	14	13	11	12	16	10	15	17
AAAGTCTCTTTTCTTC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTTAGATCAATA	alt_5492_fdr	32	40	55	44	35	30	48	21	52	33
AGTAGTCAATTTCCTG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGGTACCGGTCCA	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GCCCACCCATCTAAGC	alt_5492_fdr	16	14	19	14	8	5	10	17	6	10
TCTGTCACTACTATGC	alt_5492_fdr	9	4	9	6	8	8	14	6	6	7
TTCGTGGTGCCCCTCG	alt_5492_fdr	4	2	7	2	6	4	6	2	2	3
CCATTGCGGTGCGGAA	alt_5492_fdr	19	15	18	28	12	26	14	17	13	18
ATGTTTTTTAGTTAGC	alt_5492_fdr	19	27	30	16	17	26	19	16	29	16
TGTTCTTAGTGTGGTC	alt_5492_fdr	9	16	17	26	18	11	25	23	14	12
GCTCAATTATAGTTAC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
AGATGGTCACGTCTTC	alt_5492_fdr	25	15	11	18	16	11	14	9	14	16
TTTGTCTTTGACCTCA	alt_5492_fdr	17	12	18	19	16	12	22	10	12	14
GATTGAATGGAAAGCT	alt_5492_fdr	59	75	69	67	72	64	67	50	81	43
TTGTCCTTATGTGAGC	alt_5492_fdr	19	6	13	15	26	12	24	9	20	14
TTGTGGTATGGATCTC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TGTAATCTTCAGTAAC	alt_5492_fdr	13	11	10	8	19	3	7	15	10	7
CCTTCGCTCGACTCTA	alt_5492_fdr	68	190	103	92	146	81	186	81	174	75
GCCCTCCCGATGTTCG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CCCGAATGCTGGAGGT	alt_5492_fdr	3	12	10	4	8	6	9	7	7	3
GCACTCCACGTTCTCC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCTGACCGCTCCT	alt_5492_fdr	30	14	31	19	32	17	15	33	29	20
AGTATCTACGATGTCC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
ACGTCCTATATCGCCC	alt_5492_fdr	18	18	28	28	15	9	29	27	21	20
TGACTGGTGGAACTTG	alt_5492_fdr	32	39	30	27	37	39	29	26	37	22
TTGGCGCCACTTGTTC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGGCATGTGAGG	alt_5492_fdr	6	4	10	4	6	6	5	6	12	4
CTTAGATAGGGATTTC	alt_5492_fdr	1	1	2	0	0	0	1	0	2	4
GTTTACCCTATTTACA	alt_5492_fdr	140	178	165	130	172	126	171	117	167	128
CTGCTTGCATGGCGAG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTATGTGTCTAACGCG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCACAAGTCTAA	alt_5492_fdr	52	68	56	70	54	49	72	52	79	59
TACCAGGTTCCTTGTA	alt_5492_fdr	22	15	22	26	20	16	27	17	24	10
ATACCCTTCATCCGTA	alt_5492_fdr	40	43	45	49	56	35	40	35	54	27
TGGCATGCAACGCGAC	alt_5492_fdr	13	15	18	13	13	13	10	7	9	14
ATTGATATTTTTTTCG	alt_5492_fdr	0	1	0	0	0	0	0	0	0	0
TGCTCTCTATTGTTTC	alt_5492_fdr	23	25	33	27	23	16	17	20	25	17
CGGGGCCTGCAGATAT	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CTATTTGTTAGTTACC	alt_5492_fdr	43	48	44	42	34	38	40	31	35	38
GTACTATTTCTATTGA	alt_5492_fdr	0	4	3	1	0	2	1	3	3	0
GGTTTTTAGACTCTGC	alt_5492_fdr	9	8	12	11	25	10	11	12	10	9
TGAGTTAGATTGCAAG	alt_5492_fdr	17	29	30	22	49	22	40	16	27	24
GAGGTTACTTTTACGC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGTGACTTTCCTG	alt_5492_fdr	19	16	12	11	15	13	21	14	19	9
TGGTAGATTTCACTGT	alt_5492_fdr	48	53	60	38	50	31	57	31	48	28
GGGCATTGACTCCATG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTTCCTCTTAAA	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGTGTATTGGGTT	alt_5492_fdr	19	25	12	13	12	7	13	10	17	15
ATAACTGATTCCACCC	alt_5492_fdr	4	7	6	7	7	9	7	5	4	6
TGATAGTCAACCTTAC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTCCTTAGTGCTT	alt_5492_fdr	6	23	10	10	17	7	10	16	20	11
ATCGAGTCAGCGTAAC	alt_5492_fdr	215	187	282	219	200	202	243	189	215	207
GTCACGGGACGTTATA	alt_5492_fdr	17	25	24	13	23	23	24	31	21	19
TACGACTCGCTAACTT	alt_5492_fdr	6	5	7	3	4	5	2	6	2	4
CTCTGTGGCGTAGGAG	alt_5492_fdr	41	61	67	62	43	43	61	28	52	34
TGCCATTTATCCAAAG	alt_5492_fdr	45	59	60	53	56	44	66	47	74	38
AGCTTACCCTGACTTC	alt_5492_fdr	44	46	44	51	51	34	48	28	57	19
CGGACTCTAATTATAG	alt_5492_fdr	2	3	2	3	0	3	3	2	0	4
TGTTATCTGGATAGCC	alt_5492_fdr	24	29	31	49	32	26	41	31	27	24
TTGGCATGTTCAGACA	alt_5492_fdr	13	13	10	15	16	11	9	15	11	14
TTGTATGTGCTGTTCT	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCGCAGACCTTGA	alt_5492_fdr	36	22	27	32	27	27	23	25	35	38
ACGTTTGATTTGCATG	alt_5492_fdr	6	10	7	10	11	6	18	7	14	7
TATGAATAGAACTGAC	alt_5492_fdr	16	8	22	20	14	10	19	13	23	8
GTCAAGCGTCTAGGGT	alt_5492_fdr	55	61	82	58	69	70	50	44	72	46
TTCGTTAGTAGTGTTA	alt_5492_fdr	49	50	55	35	53	42	59	39	51	45
TTGCTCTTACTATGCA	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTCACAGTCCAGGCGA	alt_5492_fdr	27	32	25	20	32	22	25	17	29	22
ACTGGAGGGGTTTTTG	alt_5492_fdr	81	82	78	88	88	77	80	62	77	62
CATATTTTTCTAGATC	alt_5492_fdr	9	11	10	16	14	10	2	13	17	9
ATGTCGGTAAAAATGA	alt_5492_fdr	5	6	15	5	7	7	8	8	6	3
CACAACCACCTTCAAG	alt_5492_fdr	63	200	45	76	205	45	187	56	208	53
TTCGTCTGGTAGCCTC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGACGCCGTTAAT	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTGCCGTATTAA	alt_5492_fdr	6	26	12	12	23	12	28	12	46	11
TTATGGAACCCGCAGC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CATTCAACGCCAGTTG	alt_5492_fdr	5	7	5	5	5	6	3	8	12	5
TAGTCACGATATTCGG	alt_5492_fdr	23	9	17	15	13	8	14	15	25	13
CCACCTTATGTATAAT	alt_5492_fdr	14	38	21	19	26	22	26	12	33	16
CCGCTCAGTGCTGCCA	alt_5492_fdr	11	21	20	17	15	13	30	15	13	12
GTTCCTGTATTTAGCT	alt_5492_fdr	32	29	17	28	22	31	28	18	34	9
GAGCTGCCTATGTTAG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGCCATAGTAGTA	alt_5492_fdr	11	14	17	16	11	11	13	8	11	9
TCTATTTTAGCTCCCC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GACTCCGTCACCTTCC	alt_5492_fdr	23	34	30	36	53	30	34	20	45	31
AAGGTGACAGTGTCTT	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGACACTATTTAT	alt_5492_fdr	8	19	20	14	23	5	17	15	9	17
GCGTCGCCCCCCCTTA	alt_5492_fdr	23	18	25	24	29	17	25	25	31	25
TTGTATGTGTATTCTG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCCGGCTCTTCTG	alt_5492_fdr	5	3	4	2	1	6	5	3	7	4
GTAAGTGTATGTATGC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CTGCATCCATTTAGGG	alt_5492_fdr	3	1	10	3	8	1	4	7	2	1
CGCAGTTCTAACATGT	alt_5492_fdr	3	6	12	10	4	9	8	4	7	3
GTCCGTGGTTATACGT	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CAAATTTACGATTGCG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCATAAGTAACTG	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
GGATACTATTGAGACT	alt_5492_fdr	80	76	77	74	105	67	90	71	121	75
CACGAGAGCGATTACT	alt_5492_fdr	35	35	36	39	40	41	40	30	38	36
GCCTTTGTTAGGGCAA	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTGGGTCGATGAT	alt_5492_fdr	0	0	0	0	1	0	0	0	1	2
GTCAGTCGAGGTATTC	alt_5492_fdr	65	72	92	70	65	58	85	60	68	67
CTTCTCTTAAACTCGA	alt_5492_fdr	86	46	76	60	71	56	60	59	49	63
TCTCAGAGGTGGGTGT	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTCAGTCTGTTTT	alt_5492_fdr	13	26	34	18	26	21	18	18	38	16
CACTGGTTCACCCCTG	alt_5492_fdr	3	7	5	6	6	3	8	3	1	1
AGGGGATCAGGGGTGC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTGGGAGGAATGC	alt_5492_fdr	8	17	8	16	13	25	17	12	14	11
ACCCGTAAAGGATTTT	alt_5492_fdr	16	14	18	13	10	15	13	7	17	13
GTCAATCCAAGTCCGG	alt_5492_fdr	137	137	156	153	163	152	160	146	154	122
GCTGGGCCGGGGCAGT	alt_5492_fdr	28	32	35	37	33	29	38	57	50	32
AGTGCTGACATGTCCC	alt_5492_fdr	7	4	6	9	9	9	12	9	7	7
CCATCGTAGAGTTATG	alt_5492_fdr	18	16	27	29	15	15	33	21	26	23
CTCATGCTCATTATTT	alt_5492_fdr	14	17	17	16	16	18	18	14	21	9
CAACGGGTCATGGTTC	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGGCTAGCGAGTA	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
CCATAAGTCTCCCTGA	alt_5492_fdr	2	0	4	2	2	2	2	1	5	4
AAACCCTTCATCCGTA	alt_5492_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCAGTGATGAGTC	ref_5864_new	0	0	0	0	0	0	0	0	0	0
ACCGAAGACTATTTAT	ref_5864_new	0	0	0	0	0	0	0	0	0	0
TTGCATGCTAATATAG	ref_5864_new	13	18	8	7	15	11	29	10	26	13
GGAAACCCAGCTATGG	ref_5864_new	0	0	0	0	0	0	0	0	0	0
GAAGTATATCGTTGGT	ref_5864_new	2	6	1	2	2	1	3	5	3	1
GGCTTCACCTCGCCAC	ref_5864_new	0	0	0	0	0	0	0	0	0	0
AGAGGCATACTTGTGT	ref_5864_new	15	8	16	14	19	24	13	16	15	16
CGGATGCATGGGCGGG	ref_5864_new	0	0	0	0	0	0	0	0	0	0
CGCACCAATCATTAAG	ref_5864_new	103	78	133	117	85	95	73	72	74	98
TAGCCGGAGTATGATT	ref_5864_new	4	1	17	8	5	3	8	7	4	4
CTCCAGGCCGAACGCC	ref_5864_new	0	0	0	0	0	0	0	0	0	0
TTCGAAAACATTATTG	ref_5864_new	45	35	44	42	30	45	29	29	32	29
GAGGAATGTTTTAATA	ref_5864_new	111	73	125	122	78	98	67	84	80	88
CGATTGAAGACGAGTC	ref_5864_new	5	1	5	2	0	3	5	5	2	7
CTTGGACACGTTGGAT	ref_5864_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTTATTATGCA	ref_5864_new	161	149	210	202	155	186	150	195	142	181
GCGGTTGTAAGATGGC	ref_5864_new	19	14	28	25	13	16	9	23	11	25
GCTATTTATAATCGTC	ref_5864_new	3	0	7	1	3	1	2	2	3	4
GAAAATTTCCATACCT	ref_5864_new	42	31	51	42	39	34	38	35	29	36
TGCCTGACCTGAGATT	ref_5864_new	16	12	20	10	10	14	11	17	10	9
CGCGCCTGGCTGATCT	ref_5864_new	16	6	16	18	5	7	17	13	12	14
TTTTGGAAGACGACCA	ref_5864_new	70	39	100	79	55	77	50	71	58	62
GGTCGTATCCTTCACC	ref_5864_new	68	55	76	56	51	56	51	46	73	49
TGCGACGCCAGTCTTC	ref_5864_new	18	19	24	18	31	18	29	34	16	22
GGGCCAGTCACCGTCT	ref_5864_new	14	4	8	16	2	8	2	9	3	6
CTTCATGGGCAATGAT	ref_5864_new	10	4	10	11	12	19	12	13	13	10
TTTTCCGTACACCTCT	ref_5864_new	2	2	1	3	0	7	4	5	1	2
GATAGGCCAATCTGTT	ref_5864_new	49	30	54	47	26	42	42	45	34	57
TAGCACGTCCTCTCGT	ref_5864_new	0	0	0	0	0	0	0	0	0	0
TAAGGCTATTCAACAC	ref_5864_new	0	0	0	0	0	0	0	0	0	0
TTAGGCAAATCTGAGT	ref_5864_new	688	455	814	689	505	640	504	640	442	624
ATCACAGTGCTTATAG	ref_5864_new	0	0	0	0	0	0	0	0	0	0
TGTCGCCGCTCGCCTA	ref_5864_new	24	35	12	23	30	17	36	14	45	20
TCACTTCCTACTCACG	ref_5864_new	3	1	2	7	3	3	2	4	0	2
GGCATAAGTACCTCAA	ref_5864_new	15	9	20	10	12	26	11	10	8	10
GCCTCACATGTTTGGG	ref_5864_new	0	0	0	0	0	0	0	0	0	0
AGTTCATATAGCTAAG	ref_5864_new	44	31	52	37	32	37	28	45	29	44
TTAAATGTAAGACAGT	ref_5864_new	0	0	0	0	0	0	0	0	0	0
ATTCCTTCCAGCGTTT	ref_5864_new	41	27	53	53	22	41	39	44	41	37
TCGCGCCTTGTATCTC	ref_223_RC	23	9	44	29	10	29	10	38	13	29
GCTTGCATCCCCCCTG	ref_223_RC	72	26	91	77	27	76	30	58	34	59
TCGGATGTGCACAATC	ref_223_RC	82	47	133	117	44	85	35	83	63	79
AATCCGGAGAACTCTT	ref_223_RC	21	4	43	17	6	29	7	16	7	20
ATTGCTGGCACCTACG	ref_223_RC	76	34	122	88	22	73	22	80	21	86
TTATCGGTACACCTTT	ref_223_RC	205	70	249	210	85	205	108	210	105	155
TCCGCCACGTATCTAG	ref_223_RC	371	143	478	412	149	337	152	334	147	294
CTATCGCTGTCATCTA	ref_223_RC	140	44	167	110	54	114	48	116	53	107
ATGGGGGCATTCAGGC	ref_223_RC	143	71	179	165	37	125	60	162	37	121
TGCATTCTTGCTCATG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
ATTCTCATCGGGCCCT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
ATGTAGCCCATCTTTC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
AATAAGAAGCTTGAGA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GAGATTTTCCTTACCT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CTGTGCTGGGAAAAAT	ref_223_RC	207	65	214	193	62	187	76	209	80	171
ACTCAGTTTGGTTTAT	ref_223_RC	48	22	51	41	29	35	26	43	15	38
CTTGTCACATTCAGTC	ref_223_RC	12	2	7	6	7	9	4	6	6	5
TGATCCGCTCCTATGT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GGGCTATATTTGATTG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTGAGAGCGGTG	ref_223_RC	2	1	1	1	0	1	0	3	1	4
CCCCTGCAGCCTAGGC	ref_223_RC	5	0	7	5	1	5	4	7	2	4
ACCTTATATGCCTCCA	ref_223_RC	135	55	176	163	63	148	68	149	66	140
TATGCTGCGGTTCTCC	ref_223_RC	43	17	49	45	16	33	12	33	10	34
TAGAGCGTCTCGAGTA	ref_223_RC	145	72	224	150	86	147	84	141	76	144
GTTTACGGTTATAAGA	ref_223_RC	120	49	178	178	47	135	55	122	62	105
CGACATACTCAAGTGT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTGTTTGGGAAG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CTTCATGACAAAGCCC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GAGCGGCATAGCTGTT	ref_223_RC	298	106	401	331	129	310	93	319	115	291
CAACTGTCCCCGCGTT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
ATTTTAGTGGTTCGGC	ref_223_RC	31	18	47	34	13	41	11	27	16	24
TCCGGTTGCTATGCAG	ref_223_RC	103	40	89	96	52	98	57	72	43	76
TGCTAGCCCCTCTTGA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CCTTCAAAAGACTCAC	ref_223_RC	47	29	67	58	25	42	28	50	23	44
TTAGGTCCTTCCGTTC	ref_223_RC	180	63	245	187	86	174	75	168	72	169
ATTTTTACACATTGTT	ref_223_RC	13	5	23	16	7	17	9	15	9	14
CGGTCTGGGTCTGTAG	ref_223_RC	538	213	614	496	164	440	219	452	237	418
CCTTTGGCCCCTGTGA	ref_223_RC	76	27	70	80	30	64	39	53	30	69
ATCATATGACAGTGAC	ref_223_RC	101	43	149	124	41	105	52	113	43	99
GTACATAAGATACACT	ref_223_RC	59	22	61	71	28	47	18	61	34	43
ATTAACATGCGTTTAT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TGAGTATTTAGCTAGT	ref_223_RC	2	0	3	1	1	2	0	1	2	2
TCTTTTTGCGCCCCGA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CGAATTTGTTCCACAC	ref_223_RC	165	59	220	179	68	171	77	175	77	137
CGGTGATCACACCTCC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TGGGTATAGAGGCCTT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TTCTAAATGACGGCCC	ref_223_RC	56	24	51	52	19	36	13	46	22	66
CTTTAATCATATGAAG	ref_223_RC	21	11	33	23	12	19	12	23	10	24
CTCTGTAGTGTCAGAG	ref_223_RC	36	23	39	39	17	35	18	43	17	38
TCGGATCTCTCCTAAT	ref_223_RC	79	40	108	83	31	71	42	80	48	61
GTATTTTACTGGCCAG	ref_223_RC	170	58	180	176	56	140	55	154	58	120
TCTAATTTGTACACAA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TTCAGTAGCGATTTAG	ref_223_RC	43	7	48	37	10	25	8	30	11	29
TTTGGTTTATTCGGGG	ref_223_RC	416	156	467	431	168	381	153	412	185	328
TGTTGTTAAAATTCTG	ref_223_RC	0	1	1	2	3	0	1	2	0	1
TATCCGGCTTCGGAGT	ref_223_RC	66	28	91	82	21	70	16	64	16	61
TCTACTACTGATGGTT	ref_223_RC	98	71	140	96	43	94	64	110	57	88
AGGGTGCGGTTCAGTA	ref_223_RC	168	67	165	161	68	176	72	124	65	140
CCGTGACAATGGCCAA	ref_223_RC	176	83	263	250	106	202	97	193	102	200
ATGGCGACTATCACAT	ref_223_RC	216	85	286	247	71	235	75	242	90	186
GGTACATCGAATGTTT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GACCCTCCCTGCGTGT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GGGCTATCCGGCATTA	ref_223_RC	11	1	13	10	1	5	1	8	4	6
GCCCCCCTTGCCCCGC	ref_223_RC	59	30	66	76	27	48	19	54	17	46
TTGTCGTATCGTATAG	ref_223_RC	166	74	168	173	53	145	56	163	73	121
CTCCTAGAATGTGTGC	ref_223_RC	185	84	253	182	99	165	107	188	115	154
TAATGTATGCGACGTC	ref_223_RC	56	30	72	79	26	79	24	60	33	64
CCTCTCTTAGGGTCCT	ref_223_RC	51	21	58	60	19	42	19	57	26	53
CAACAGTTATTCGCCG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GCCGGTGGAATCATTA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TTTCTGCTTGTGGCCT	ref_223_RC	12	35	16	16	19	10	31	13	38	11
ATTTTCACACTGCGAA	ref_223_RC	173	54	217	144	75	154	56	144	73	150
CGGCGAGCTGGTGTGG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TAAGAATCATTCTGGG	ref_223_RC	113	31	150	98	42	108	53	77	35	85
GTTTGAGAGTTATATT	ref_223_RC	124	40	183	125	37	115	41	111	65	135
CCACTCGACTTCCCCG	ref_223_RC	35	21	49	50	31	35	28	35	19	23
TCGTAAGGATTATTTT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GATGCGTCGGATTTCA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CGTATCTTTTGCCTGC	ref_223_RC	169	58	232	187	80	162	73	182	71	169
GGACACGCCTGGGACG	ref_223_RC	18	6	34	41	14	31	13	23	7	42
AGTCTTATTTGCTTGG	ref_223_RC	52	20	45	52	16	37	13	44	13	36
AATGGATGCGACAGTC	ref_223_RC	22	15	50	41	13	31	11	37	22	26
ACCATCTTTAGCCTTT	ref_223_RC	90	39	123	101	53	94	64	78	46	107
GATTAGCACTGCACTT	ref_223_RC	43	12	68	53	22	37	24	35	21	37
TGCACTCAGGCTGTAG	ref_223_RC	131	56	135	121	44	129	59	109	39	108
CAACTATTGGTTTGCC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
ATTTTATCGCGGTGCT	ref_223_RC	18	9	33	17	14	19	9	15	9	11
CCCGTATCCCGCCTGT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GTGGTATATTTTTGGT	ref_223_RC	8	5	16	8	2	5	1	9	0	9
TAACAACGGCCTCTGT	ref_223_RC	4	2	6	2	8	3	4	7	6	0
GGGAGGACCACTGAGT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
ATTTCGAGAGGTCCGC	ref_223_RC	2	1	0	0	0	0	1	1	1	1
TCAGAAAGCTATGGAG	ref_223_RC	133	42	149	100	42	129	39	107	49	92
CATAAGCTAAGTCTCC	ref_223_RC	131	47	142	137	59	115	54	109	53	106
TTGTTTTCGTCCTGAA	ref_223_RC	141	67	212	162	74	155	53	154	60	141
TTAGCTTCGCAACCAG	ref_223_RC	70	13	96	83	23	82	33	67	27	63
GTGCATACGACCCGGT	ref_223_RC	197	72	219	227	86	166	74	199	67	178
GCCCACTGATAGGTTT	ref_223_RC	73	38	114	103	36	84	42	107	30	81
AGGTAGATTGTACCCG	ref_223_RC	86	37	123	111	42	93	34	84	38	80
TGGCCGGAGCACATTG	ref_223_RC	75	22	118	77	32	79	25	87	19	67
CGCCGACTGGGCCTGT	ref_223_RC	16	28	12	21	28	15	31	27	28	16
CGCTATTTGACCCTGC	ref_223_RC	677	308	806	760	356	678	297	650	345	569
GTAATGTGATCACTAC	ref_223_RC	104	46	128	95	53	81	65	99	50	95
GGGTTATTTATTTCAA	ref_223_RC	88	43	106	98	42	70	33	98	35	83
TCCCTTAATTATTAGG	ref_223_RC	58	22	56	48	18	36	39	40	23	37
CTCGGATATTGATAGA	ref_223_RC	157	71	202	158	74	165	47	156	70	135
CCTACTGGCATTTTGG	ref_223_RC	77	27	69	78	37	64	24	61	28	47
GCCTTGTAATCCTCTT	ref_223_RC	80	34	72	68	34	63	29	50	31	65
GTCAGGATTATTATAA	ref_223_RC	14	8	32	42	10	30	14	25	14	18
TGCCGACTGGCTTACA	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CCCAGATTTAGTGCTT	ref_223_RC	100	57	150	116	49	93	53	107	50	105
AGTGGGCTCTAGCTTG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CCCTCCATCATCAGGT	ref_223_RC	25	19	47	54	16	30	19	43	16	22
TGTTTGGTCTAGGGAT	ref_223_RC	122	40	115	120	35	113	52	112	53	97
CTGAATGCACATAACC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCCGGCCCGTTC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
AGCACTTTTCAGATGG	ref_223_RC	198	84	262	198	77	173	75	188	70	150
TAATCTTCCAAGTGGC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GGCCTTTTTCTTGCGG	ref_223_RC	186	80	205	202	59	170	73	167	84	150
ATGGGTTGGTCTGGCC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CACACAGTCGATATAG	ref_223_RC	67	52	81	52	61	64	72	68	67	54
TGTCAACCCCTTTAGC	ref_223_RC	76	11	69	51	24	80	16	56	23	54
ACCGTCTCTTTCGCCC	ref_223_RC	193	84	268	267	67	189	59	200	56	184
GACGGCAAGTAGCAAC	ref_223_RC	102	42	154	130	41	129	86	118	58	121
ACTTGTTCGGTCTTTG	ref_223_RC	12	4	16	15	15	14	12	12	14	13
CAGTAGGCTATTCTAA	ref_223_RC	116	60	137	125	64	110	63	133	76	101
GATCACTTTCCCTTGG	ref_223_RC	14	6	12	6	5	11	2	9	7	9
GCACGTGTGAGATACT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CTCCGTCACGGATAAC	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GGTCCGCTCTATGGCG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CTCCTTTTCACGATTT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
AGTCGCCGGACCTAGC	ref_223_RC	19	11	39	29	14	25	14	16	11	20
TCTAGGCACATCCGGT	ref_223_RC	376	192	439	447	210	353	200	448	201	360
TGCTTCACGAGAGGAT	ref_223_RC	147	51	150	135	41	93	46	136	46	110
CATCTTTTGCCACACA	ref_223_RC	38	17	45	42	16	50	23	32	47	39
TGTATCACGGCTTCCC	ref_223_RC	66	22	68	56	34	59	26	59	30	46
ACCCTTTACTGCGCTT	ref_223_RC	154	83	206	205	77	161	90	176	90	166
TGATGCTATAATAGCG	ref_223_RC	88	41	127	107	49	113	48	109	30	104
CCTGTTTACTAAGTGT	ref_223_RC	83	39	86	98	33	77	48	97	37	83
AGGATCCCCAGAATGC	ref_223_RC	29	18	51	42	13	34	8	43	17	38
GCTCGGATTCCGTCAG	ref_223_RC	151	49	162	150	56	112	73	130	64	137
ACTTTCGTTTTATACT	ref_223_RC	28	10	27	16	6	18	4	23	6	13
AGGGTCCTTTCAAAGA	ref_223_RC	55	26	78	42	24	70	30	50	27	49
CCTCCTGTACGCCTAG	ref_223_RC	34	28	52	59	35	36	34	40	37	40
TAAAAAATGCGGTAGG	ref_223_RC	285	94	433	368	115	303	107	324	132	299
TTTGGAAGTCCGTGGG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
TATCGGTCTGTCTTTG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CAAGGGTGTCCTACTT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
GTTGTCCGTGTGGTTA	ref_223_RC	92	38	105	111	50	109	45	97	38	79
ATCTGCAGTACGAAGG	ref_223_RC	29	6	32	24	12	29	18	20	11	18
GCTAGCTGTCTGTTTT	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CGTGCTTGTACTTTTC	ref_223_RC	112	50	139	144	50	93	44	116	55	105
GTCATGACGTGTAATA	ref_223_RC	34	16	62	58	16	35	11	44	12	32
CACAAGGATGCCATAG	ref_223_RC	0	0	0	0	0	0	0	0	0	0
CGTTACCCAAGTGGTT	ref_5680_new	9	22	11	5	26	6	20	10	20	14
GAGAGATTTTATGTTC	ref_5680_new	11	25	12	7	13	4	26	11	16	3
TATTTTTGTACAGCAC	ref_5680_new	12	56	43	19	53	32	56	23	66	25
GATCATTACCACTCCG	ref_5680_new	15	30	20	21	27	10	43	21	40	13
TTTGACTTTTCACGAA	ref_5680_new	9	14	9	13	15	7	16	1	22	7
CCGGCTCATTCTAATT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GATCACAGGTGAGAGC	ref_5680_new	29	67	24	23	97	33	85	21	82	16
GCTCCTGTCACCGTGT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
CTCTAGTATGCCAATC	ref_5680_new	27	72	46	41	92	32	73	46	115	36
TCGATGCTTTCGGTTC	ref_5680_new	26	26	19	20	42	21	27	15	27	11
GGATATTAGTTTTATC	ref_5680_new	33	48	48	33	54	20	57	33	70	25
GCCGTTCTGTCCAGCG	ref_5680_new	37	87	53	48	95	33	137	46	107	42
GATCCCGTTACTCTCT	ref_5680_new	10	15	15	9	19	9	27	7	22	9
CTTCGTTATCATACAG	ref_5680_new	5	20	7	6	13	2	18	2	13	7
TGGGTAAGCTGAGTTC	ref_5680_new	28	73	54	47	82	55	79	41	70	32
TCCGGAGTGGATGATG	alt_5680_new	14	36	18	20	50	17	36	17	49	13
ATCTGGATTAAGCAGT	ref_5680_new	6	6	5	2	8	8	7	11	7	7
TTAGCAGGTAGTATGA	ref_5680_new	13	31	19	13	24	15	27	11	35	2
AAGGGTGGTGGTTGTT	ref_5680_new	13	17	9	9	16	7	14	9	34	8
ACTCAGTACGCCCTCA	ref_5680_new	32	61	32	24	54	28	61	25	68	28
CGTTGTTAATAACCTA	ref_5680_new	16	31	14	26	32	23	25	10	36	16
TCCCAATGAGACATTC	ref_5680_new	0	0	0	0	0	0	0	0	0	0
ACCGTATAGTTCCACA	ref_5680_new	10	18	4	3	15	4	12	6	10	2
GCGTGGTACTATTACG	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GGTCATAACGTGATGT	ref_5680_new	4	5	12	6	8	3	5	8	20	4
AGTATTTTCTCAACGC	ref_5680_new	1	4	2	3	6	10	5	1	4	5
TCTTCGTGTGTCGTAC	ref_5680_new	0	0	0	0	0	0	0	0	0	0
ATCGGTTGCAACGAGA	ref_5680_new	0	0	0	0	0	0	0	0	0	0
AGAGATCAAGCTCAAA	ref_5680_new	12	21	14	5	18	9	18	12	25	10
GAATTGGTCCTTCTCA	ref_5680_new	7	16	10	6	8	9	19	7	10	7
CATCGAGCTAGAACAG	ref_5680_new	0	0	0	0	0	0	0	0	0	0
TCCCTGTTTGATTTGT	ref_5680_new	19	35	19	10	24	13	27	18	33	15
AGGTTCCCGGTTGTCC	ref_5680_new	20	31	24	24	45	21	39	15	40	20
GTTCTGATATCATGAC	ref_5680_new	1	2	4	0	4	2	0	2	4	0
GTGCTGCACCGCTGCG	ref_5680_new	2	17	11	9	23	5	20	9	23	14
TTTAATGTAGCGGATC	ref_5680_new	46	100	39	38	88	41	82	53	109	65
ACCTGATTTCACGTGA	ref_5680_new	59	119	82	73	106	75	117	78	122	59
GCTCACCTGTGCCATG	ref_5680_new	3	19	5	5	27	9	24	3	24	6
ACACGTCTCTATTATT	ref_5680_new	13	18	7	16	21	10	14	7	33	7
GCGGCTGCTAGTAAAT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GAACTGGTGGTCTCTC	ref_5680_new	65	86	61	59	97	37	102	52	71	47
CCCAGTGATCTGACTA	ref_5680_new	2	9	4	0	12	1	7	1	7	3
CTCTGTGCCCGTCCAA	ref_5680_new	18	50	22	19	61	18	44	24	34	18
CGGTCCTGCGTTGGTT	ref_5680_new	14	27	20	27	23	15	39	15	29	17
TACTTTGCCCCGGATG	ref_5680_new	8	18	8	4	15	6	17	13	13	10
TGTTAGCGAGTCTGGC	ref_5680_new	21	43	35	26	51	23	32	26	37	25
CATTCAGGCTTGCTTT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
ATAGGCCGTCCTCCAT	ref_5680_new	3	5	2	8	6	3	10	2	11	3
TTCCATCCTTGGCTAC	ref_5680_new	46	123	65	69	126	48	122	49	111	54
ATCCCTTGCGTGATTA	ref_5680_new	5	13	8	6	12	10	19	4	4	10
CACTGTCTAAAATGGA	ref_5680_new	15	58	30	28	59	16	70	25	67	19
GGCTTTTGGATCTAGA	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GTTAATGGTACATTGC	ref_5680_new	16	35	19	17	17	12	22	14	21	13
TTTGGTATGATTTACG	ref_5680_new	0	0	0	0	0	0	0	0	0	0
TTCCTCAAGTCGTCGC	ref_5680_new	39	49	42	32	66	29	76	29	59	28
TCGTGTATCATCACAA	ref_5680_new	44	107	71	57	108	72	93	40	108	62
GGGCGTTGGTAACCAA	ref_5680_new	49	120	65	43	70	52	102	53	141	33
GCAGAACGTTCCATTT	ref_5680_new	2	0	1	0	2	1	1	0	2	0
AGGCTATTATACCGTC	ref_5680_new	2	1	0	2	1	0	2	2	3	0
GACTCTGGCCGACATG	ref_5680_new	0	0	0	0	0	0	0	0	0	0
TAGCAACATTTTATCT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
TGTGTGTTGGCTGCAC	ref_5680_new	8	11	13	9	26	4	16	10	11	4
TAGGGCTAATGCTCTG	ref_5680_new	39	66	35	15	86	32	81	28	76	32
ACTAGATTACATACGC	ref_5680_new	31	57	27	18	68	22	76	25	67	18
GGTTCATGACCGCCGT	ref_5680_new	9	23	15	9	22	12	22	7	28	10
TATAAGACAATGTTGG	ref_5680_new	3	8	7	4	4	3	4	4	3	0
TTTGTTGGAGTCACGT	ref_5680_new	0	2	2	0	2	0	2	0	0	1
CTATCTAGAGATTTTG	ref_5680_new	0	0	0	0	0	0	0	0	0	0
TGTTATGCGTACGCGG	ref_5680_new	2	4	6	3	7	0	15	5	5	0
GTGGTAATTTGCCTCG	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GTGATGAATCTATTAT	ref_5680_new	12	36	9	14	29	9	24	10	29	11
AGGCGGTTTTCTCCCC	ref_5680_new	12	40	16	10	42	16	40	16	43	15
ATGGGCCTTGCCAAGC	ref_5680_new	0	0	0	0	0	0	0	0	0	0
CAGACATTTTCGGATA	ref_5680_new	0	0	0	0	0	0	0	0	0	0
CGCAATCCGTCCAGGT	ref_5680_new	4	13	8	3	4	5	6	1	9	7
ATAAGTATATTTAGTC	ref_5680_new	20	46	27	26	37	17	57	23	55	35
TGCCACAGGTCAAGTC	ref_5680_new	19	48	26	11	50	22	51	12	47	18
ACCAGATACACCTACT	ref_5680_new	9	25	15	9	29	9	29	12	36	11
AACCCACGTCAGTTTA	ref_5680_new	9	26	10	6	14	15	12	7	21	6
GCGAATTGAAGTGTTT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
AGGGGACGCTCGCATT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
TATAGCTCATAACGAG	ref_5680_new	285	536	376	297	586	322	641	288	587	297
GGTCCGGCTATGCTGT	ref_5680_new	3	7	6	6	2	3	2	0	6	6
GAGGGACGTCGTACAT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GGAATGGTCGTTCTCG	ref_5680_new	10	14	12	7	13	10	14	8	16	10
CTTATAAGAATATTTT	ref_5680_new	87	109	104	87	165	69	159	65	131	66
AGCTTATTGCAGTTTT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GAGTACCCAGGGAGCC	ref_5680_new	30	38	32	21	46	18	52	43	57	15
CTTGCCGCTGACTTGG	ref_5680_new	29	75	36	34	53	25	71	28	61	21
TTGTTGGATTTCGTTA	ref_5680_new	7	23	7	6	32	10	33	16	22	3
AGGATTAGCATTGCTC	ref_5680_new	31	63	32	32	45	30	67	31	59	16
TTCTTTCAATGACCTT	ref_5680_new	11	28	7	11	20	12	25	9	23	7
TCATTTCTTTTGGACG	ref_5680_new	12	12	20	16	17	13	18	6	16	9
CCAGACGGTGGCTCCC	ref_5680_new	0	0	0	0	0	0	1	0	1	0
GTCTTTTTCCCCCGCC	ref_5680_new	28	40	27	23	43	20	50	16	63	21
CAGGAAAGAATGTGTA	ref_5680_new	20	45	25	22	52	22	50	21	51	14
TTGATTACACTTTGGG	ref_5680_new	13	35	17	11	25	18	28	16	23	18
CATAGGAGCCTCCGCT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
ATCCGAGGGCTTGATC	ref_5680_new	5	21	5	9	18	11	20	3	14	9
TGTTGCTAAGTCTAAC	ref_5680_new	2	7	4	5	13	3	9	4	15	9
GAAGGGGGGTAACCTT	ref_5680_new	0	0	0	0	0	0	0	0	0	0
CCTACCGCTTTGGGCT	ref_5680_new	4	23	14	5	32	2	23	9	40	3
TAAATTTTACTCGTGC	ref_5680_new	5	26	16	6	26	7	23	5	17	13
GGAAGGTGCACTGTAG	ref_5680_new	0	2	3	1	3	1	1	0	1	0
TTCTTCATTACTTTCC	ref_5680_new	15	21	3	12	33	3	17	5	21	10
CTCCTCCAATTTCCAA	ref_5680_new	0	0	0	0	0	0	0	0	0	0
GACTTTAGCGTGTGGT	ref_1416_fdr	58	82	107	65	58	73	85	64	107	63
TCGACAGGCGTCTAGC	ref_1416_fdr	10	6	7	15	16	10	12	9	13	17
CTTTCGCGTAGCGTCA	ref_1416_fdr	2	2	5	2	7	5	9	8	7	5
GACGTTCCGGAATCCT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
GAAAGCACGCAGAATC	ref_1416_fdr	372	292	391	399	305	299	309	337	326	291
ATTGCAATCGTCTAGA	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
GCGATATCTGCGGACT	ref_1416_fdr	3	2	3	1	2	6	2	4	2	4
CCGCAAATATGGTAGG	ref_1416_fdr	5	3	2	10	11	5	11	5	8	4
GTCGGACCTCTTGACA	ref_1416_fdr	33	32	43	32	43	30	32	33	35	35
TCACTCCGATGCCCGG	ref_1416_fdr	83	140	83	72	121	74	120	85	120	81
TCGTGCCGCAAATCTC	ref_1416_fdr	84	85	91	91	77	78	111	73	100	91
TCGTGACGCAAATCTC	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
AGTGACTCTTGGTGGA	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCTGTTGACAGTT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
CACCGTGGAGGAATCT	ref_1416_fdr	12	12	25	9	8	7	13	19	13	16
CTTCTTAAGTTTTTCC	ref_1416_fdr	52	73	86	82	64	53	91	56	88	61
AAGACTTAGCGGGAAC	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
GGATAAATGAGCGATT	ref_1416_fdr	108	53	113	87	76	72	76	76	95	87
GTCCCGTCCTCATTCC	ref_1416_fdr	46	109	84	65	113	57	75	72	86	57
ATAGGGGGAACTTTAA	ref_1416_fdr	43	61	49	51	44	46	61	56	72	48
ATCTCGGTTTTCCGAC	ref_1416_fdr	40	32	42	37	33	29	45	43	41	53
AGACTGTTTTAGGGCG	ref_1416_fdr	114	93	120	125	117	118	139	128	112	96
CCTATCGGGGCACCGC	ref_1416_fdr	14	13	16	22	22	22	27	23	25	20
CATCCTCCTTTGTACT	ref_1416_fdr	26	42	45	29	33	22	41	28	41	24
TTTCGAATTCGATTAG	ref_1416_fdr	15	16	13	10	9	15	8	12	18	8
GTGAGTGTTGATTGGT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTAGCACAGTTCT	ref_1416_fdr	34	36	39	35	30	29	35	32	32	38
TTATAGCAGCTAGAAG	ref_1416_fdr	5	3	4	12	9	2	7	3	8	5
CTTTTTGTGCTGACGA	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCTCAGCCTCCCG	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
CATTGTTTTAAGCCAG	ref_1416_fdr	12	15	10	9	17	13	14	6	12	7
ATAAGTCACGGTCACA	ref_1416_fdr	157	117	148	136	115	110	131	113	122	122
TCCACGTAAGCTCAAT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCAACCCGTCTAT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
CATAACCAGGACACTA	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
GCTGAGTCGTAGCCCA	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
TACTAATTCTTCGCAG	ref_1416_fdr	57	52	96	71	71	64	52	56	69	77
TGGGCTTCAACTATAG	ref_1416_fdr	18	16	17	25	24	12	17	11	25	11
GCGGCAACGGACTCGA	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTAGTTTCGCCAC	ref_1416_fdr	10	19	11	7	9	7	14	15	10	12
CGACGTACTTTAAATC	ref_1416_fdr	54	62	69	55	67	48	71	50	63	56
TGAGAGGTTTCCAGTC	ref_1416_fdr	24	26	18	20	32	15	22	24	32	23
CCATCTAGATTTGCTT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGCGTTGGTATAT	ref_1416_fdr	22	26	15	23	15	24	25	16	18	18
TGTAGTAGCGTTATAA	ref_1416_fdr	137	140	200	162	138	146	146	156	189	157
TAAGGCTGATGGACGT	ref_1416_fdr	7	6	12	5	3	7	8	7	10	2
GCTTCACTTTTACTGT	ref_1416_fdr	13	14	7	14	10	8	15	10	18	9
TCTCTCGCGTTGTTTG	ref_1416_fdr	7	5	3	11	6	6	4	5	6	4
TTAAACCAAGGCCGTG	ref_1416_fdr	108	99	131	120	100	130	114	105	103	117
GAAACATCCGTGCACG	ref_1416_fdr	34	36	57	45	45	41	33	39	47	39
AGCTGAGTAACCGGGA	ref_1416_fdr	61	45	88	66	64	59	38	59	65	44
ACATTCGGGGGGTAAG	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGTGCTTACAACT	ref_1416_fdr	5	6	6	13	6	6	20	10	7	10
GCAACAACGGGCTCGG	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCTCTCGGGATTG	ref_1416_fdr	27	32	31	17	13	19	24	16	19	15
GTCCATGTACGTTTAT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
GTTTACAACGGGCCGT	ref_1416_fdr	33	29	44	30	39	37	28	28	43	36
CAATGCCCGAATACTG	ref_1416_fdr	8	14	12	10	17	12	13	9	10	8
GTTACGGTGGATTTAT	ref_1416_fdr	1	2	4	2	2	0	2	2	3	2
CATCGCTTTTGAGTGA	ref_1416_fdr	40	62	50	46	58	45	82	50	68	41
ATCCTTGGAGCTGGCT	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
TACTTGACCCATAGTC	ref_1416_fdr	16	22	11	25	25	21	19	14	19	19
CGCTTATTATCGAGCC	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTATTAAGCAAC	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGTATGTTTTGTA	ref_1416_fdr	73	64	65	75	69	63	71	68	78	56
AGGTGTATCAGGCCAA	ref_1416_fdr	88	97	78	79	89	86	80	51	95	65
AGGTCCGGGCGATCTT	ref_1416_fdr	16	7	20	10	14	12	8	21	16	11
GTACCGCGACATTTAG	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
GCAGGCGCCCGCATTA	ref_1416_fdr	35	41	64	51	46	42	57	65	67	38
TGATCGTTCGGTTGCC	ref_1416_fdr	0	0	0	0	0	0	0	0	0	0
GCGTATGGGATTCCAC	ref_1416_fdr	40	56	55	54	82	35	64	42	66	35
ATTTTCATATTTCGTT	alt_5365_upstream	7	9	21	12	7	8	7	9	8	14
TAAGACTTGATGCCTT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
ACTACTTTCCTGTCTT	alt_5365_upstream	10	9	17	17	10	4	4	12	8	10
TCCGTATACTTGGTGC	alt_5365_upstream	10	16	8	14	11	6	9	9	10	7
TACCATCTCTTCTTTT	alt_5365_upstream	46	33	70	69	30	60	53	47	23	48
GGAGCCGGGTTATGTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CACAGTGCGAGCATCG	alt_5365_upstream	92	99	139	125	105	101	98	116	114	106
CTATTAGCGAGTCGCG	alt_5365_upstream	175	111	187	168	80	143	111	153	136	150
GCGCCCCAAGTTATTT	alt_5365_upstream	24	24	29	29	10	25	17	29	21	26
AGGTAGCTCGCAACGT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTCAACACGATCCTAC	alt_5365_upstream	7	2	12	15	9	11	4	4	9	5
TGTTCTCCGCTGTTAC	alt_5365_upstream	81	42	93	87	38	72	59	88	39	66
GACTATTACAACCCTG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGTCCTCATTTGC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGATATTGCGAGA	alt_5365_upstream	25	11	41	46	26	36	17	28	17	33
GTTCCTGACGTATGCT	alt_5365_upstream	19	38	26	23	41	23	32	24	38	11
TATAACCGGTACTGCT	alt_5365_upstream	64	44	70	60	43	41	44	65	53	61
GCCTGGTTTGCGTCTC	alt_5365_upstream	22	15	51	21	17	25	20	39	16	21
ACGCACTTCTCCTCTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
AACCGTTAGTCTATAG	alt_5365_upstream	88	49	95	106	46	90	71	112	59	106
GACAAACGTACTTCGT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
AATTGTCGTAATACAG	alt_5365_upstream	48	32	97	73	50	65	51	57	38	49
AGTCTCGTGATTTATG	alt_5365_upstream	44	25	57	39	20	34	17	43	19	35
GCTTTAACTCTTGCGA	alt_5365_upstream	9	4	8	7	7	8	9	3	6	9
TTGCCTTCTCAGTGGC	alt_5365_upstream	1	0	1	0	0	1	1	0	0	1
GATTCTTTATCGAATA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTATTATTTCACGAGT	alt_5365_upstream	58	28	64	60	28	40	31	60	35	49
AGGTTTCGTTTTTTTA	alt_5365_upstream	200	109	281	201	99	245	122	227	116	195
GCTAATCATTTGAATC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CAAATAACAAGACAAT	alt_5365_upstream	29	14	32	23	18	33	18	28	28	27
ATGCGATAACGCTTGT	alt_5365_upstream	73	26	73	61	33	55	32	65	32	62
TTTAAGCTATCGTGGA	alt_5365_upstream	24	34	34	31	44	22	37	27	37	17
TCCCTGCTCCATGTAT	alt_5365_upstream	4	1	6	8	4	6	2	9	4	10
AATAGCCCGTTGCGTC	alt_5365_upstream	22	16	21	23	18	19	8	25	17	9
AGGCTTAGACACTCTG	alt_5365_upstream	136	71	145	118	71	132	81	88	74	112
TTGTTACGATGGGGGT	alt_5365_upstream	163	68	215	162	70	173	115	158	116	135
CGCGCTCGCCAAATGG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTACACTGGTGCA	alt_5365_upstream	13	3	13	16	11	10	11	7	7	18
TGTCTAGCGCTTATCA	alt_5365_upstream	8	3	16	12	7	11	6	9	6	3
ATTGGTTGCGGCGATA	alt_5365_upstream	2	0	2	0	2	2	0	3	0	0
CTGGTCTTGTCGCCCT	alt_5365_upstream	38	59	59	66	73	65	74	52	60	59
CATCTGGTAGATGTCA	alt_5365_upstream	4	3	3	2	2	2	10	4	4	7
GGGAGGCGGCACCTCT	alt_5365_upstream	8	2	10	7	8	4	3	6	1	9
TGGGCCTCTCAACGCT	alt_5365_upstream	23	11	22	17	14	20	5	25	7	20
CCTATCCTTTTTTGCA	alt_5365_upstream	3	6	2	4	6	2	4	2	8	4
TAACGAATGTAAGCTT	alt_5365_upstream	188	111	226	199	107	164	115	146	108	156
TTATTTAACGCTTAAT	alt_5365_upstream	16	11	41	25	18	27	11	22	15	22
CTTTGACCCAGTCGCC	alt_5365_upstream	70	31	60	57	31	54	39	68	37	54
ACTCATGATATTCTAT	alt_5365_upstream	48	26	59	45	27	45	37	39	42	28
GGTACTTGATTAGAAC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCATCCCTCCAATGGC	alt_5365_upstream	25	13	45	40	20	26	22	23	15	34
GCGCGGGGCATGGCCG	alt_5365_upstream	9	5	13	12	5	7	5	13	9	7
GGTCATCAGTTCCTCC	alt_5365_upstream	35	30	79	58	34	49	30	65	24	55
GGGCGTGGGTGTTTAT	alt_5365_upstream	93	59	131	94	62	85	60	123	53	97
GACAATATAAACCTCG	alt_5365_upstream	65	29	67	57	17	68	22	67	35	61
AGGCCGGTGTAGATGC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGAACTAGACTGA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGCTTTGCAGCTA	alt_5365_upstream	11	10	25	19	5	14	9	6	9	12
CGCCACTCGGTACACT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTCGGGTCGATAA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCGCCTGCTGCCC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGGTAACGAGTTC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCGGCCTACCGCT	alt_5365_upstream	211	127	220	228	104	209	142	209	131	166
TCCTAATCGTGTCCCT	alt_5365_upstream	1	3	2	1	0	0	1	1	1	4
TTTATTATTTCTTATA	alt_5365_upstream	13	16	18	20	4	13	12	11	6	9
CTGTGATTAGTTCACA	alt_5365_upstream	22	9	20	23	19	19	8	14	14	25
TTTCAGTGTCTTGCTT	alt_5365_upstream	181	117	201	207	102	184	133	167	98	133
TTATTCACCATAGTGG	alt_5365_upstream	124	75	161	113	80	132	71	117	84	116
TTATTACAATAGTGTC	alt_5365_upstream	63	30	60	44	38	47	30	45	34	48
GGTTATGGCTCCTGGG	alt_5365_upstream	52	19	46	55	30	58	20	58	30	40
CTCCACTGCGTCTTCT	alt_5365_upstream	9	6	6	6	8	4	10	8	4	2
TCAGATGTGAGGGCCG	alt_5365_upstream	105	72	126	110	45	90	68	129	72	95
GGTTTGCGCGTACACG	alt_5365_upstream	38	24	35	34	14	27	21	32	26	27
TTGTTATCAGTCGCTC	alt_5365_upstream	13	26	14	29	19	15	14	17	6	16
AAGGCATAGGATTGAC	alt_5365_upstream	89	48	109	100	68	82	66	83	49	81
CCTGCTTTACATGTCA	alt_5365_upstream	56	69	82	91	77	61	87	82	86	76
CCTATTTTGTCTCATT	alt_5365_upstream	31	6	29	15	14	25	10	27	15	12
AATGAGTAGTTGGGTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TACACGTCGGTAATGA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGCTCCCTGTCGT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTAGAGACTATTA	alt_5365_upstream	1	2	7	4	2	6	3	6	4	7
TAACCATGCGGACTAT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGAACTCGGATAGATA	alt_5365_upstream	13	11	24	14	9	18	11	18	15	13
CGCCGTATTGGACTTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTAAACTGGAATA	alt_5365_upstream	38	18	38	46	21	43	21	32	19	26
AACAGGTGATCTTCAG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TAACATGGTTGTTTGT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCCCTCACGCGAA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGTGTTCCGGCGC	alt_5365_upstream	57	25	51	63	41	44	22	41	25	32
GTTATACAGTTGACTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTGCAGTCAGTGG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CAATCTGACTTGTGAG	alt_5365_upstream	73	54	98	71	63	67	64	52	53	62
CCTATCAGCTGTGGGA	alt_5365_upstream	103	86	103	93	83	91	96	92	98	82
ACCATAACGCCCCTGT	alt_5365_upstream	62	56	78	90	52	61	52	74	53	49
CTGGTAGCTTCTCCGT	alt_5365_upstream	28	25	42	28	11	17	22	23	17	25
CAGGATTTGACGAACC	alt_5365_upstream	94	55	97	87	47	74	49	99	51	77
TTACGACCCACCCTTC	alt_5365_upstream	10	8	10	12	10	13	10	12	10	16
GCGCCCTCCCTATCGT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTACACGGTCGCCTCG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTTCTGAGTTTCT	alt_5365_upstream	37	31	53	68	21	52	35	48	29	30
GTACTCCACGTGTTAT	alt_5365_upstream	10	9	12	7	11	8	4	12	12	10
GTCTATCCTGTGTGTA	alt_5365_upstream	4	1	9	6	2	8	5	4	1	6
CCTTGGGAAACATTGC	alt_5365_upstream	33	17	28	44	34	38	26	38	25	28
TTGCAGATCTTTCAAA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCAGTATCTAAAC	alt_5365_upstream	22	14	24	25	26	15	13	20	12	17
AAGTGTTAGTCGTAAA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTGTCTTCTGAC	alt_5365_upstream	41	21	45	42	17	38	29	39	15	29
CGAAAGTGTTTTGAGT	alt_5365_upstream	22	10	28	22	6	12	13	15	14	14
AGCTAATGGATCGTCC	alt_5365_upstream	17	15	21	28	17	27	23	25	16	24
AGAAATCTGACTTTCG	alt_5365_upstream	26	15	36	19	9	23	15	23	17	24
ACCTTGCCCACGTTTG	alt_5365_upstream	17	7	18	16	14	24	16	25	14	15
ATATCATCACGTAGCA	alt_5365_upstream	58	32	67	53	42	58	29	66	37	60
GTCACGTCGCGCGGTT	alt_5365_upstream	24	19	33	23	18	36	16	28	21	45
TAACCGGATTATACGG	alt_5365_upstream	33	18	24	31	22	24	15	25	16	26
ATGTGCCGTGCTGGTG	alt_5365_upstream	6	8	11	4	4	6	3	8	1	7
ACGCATAATAAGATAT	alt_5365_upstream	19	10	30	27	11	20	11	27	9	21
CTCTTTACGCATGCGG	alt_5365_upstream	32	19	33	18	20	23	25	21	9	17
CATTATTTCCTAATTG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTAACTCTACCGA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TATTCTCGATCGGTCT	alt_5365_upstream	70	39	73	89	36	59	36	71	47	50
CGCCATCGTTATTGTT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTGCGTTACACCG	alt_5365_upstream	80	64	99	95	62	75	67	76	45	65
GAACCTGCTGTCGTTC	alt_5365_upstream	109	50	116	104	61	123	68	87	71	97
GGGTTCCCCCTACCCG	alt_5365_upstream	32	20	42	29	29	30	20	40	25	23
TGCCTTTACCTTCGAG	alt_5365_upstream	8	7	10	12	5	8	8	10	0	5
ACCTTGAGTTCCTCTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGTGCAACCCCAT	alt_5365_upstream	23	16	17	18	4	19	9	21	12	14
TAGTGTCACCTTATTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGTTCGCTTTCTC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAAATTCGTTGTA	alt_5365_upstream	56	23	90	60	51	62	36	58	32	59
CTGGCCTGTTGACCCG	alt_5365_upstream	31	13	26	31	15	39	19	20	17	25
CGACACCAAAGTTGAG	alt_5365_upstream	37	16	23	28	11	33	14	21	8	16
CTATTCAATTCCTGGA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTACCTTGCGTCACGT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTCGGTCCTATG	alt_5365_upstream	11	17	18	13	18	15	8	20	8	17
AATTGGTCTTCTAATA	alt_5365_upstream	122	57	109	97	68	109	63	127	61	81
GTTTTTCCGCTGATAG	alt_5365_upstream	29	25	47	44	16	38	30	28	15	27
ATATGGCTAATCGGAT	alt_5365_upstream	269	127	276	255	107	256	119	255	122	227
ACCCAGCTACGTCTCA	alt_5365_upstream	7	11	14	15	10	11	15	7	6	15
TAGGGTGTGTCATAAT	alt_5365_upstream	8	5	5	7	1	10	4	7	5	7
TACTTTGAACCCTATA	alt_5365_upstream	21	18	24	28	20	28	16	28	13	25
TTCGACGAATGTTCTG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTCCTCTGCGACT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
ATGATCCCCACTATGA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGAAAAGGCCTCG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
AATGCTTATATACTAG	alt_5365_upstream	67	35	100	100	41	66	49	90	56	68
CCATTTTACGCTCTTG	alt_5365_upstream	21	9	41	27	10	18	22	23	11	28
ATGCACTTTTGAGCTT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTATGAACTTCGT	alt_5365_upstream	14	3	10	13	3	8	10	8	4	6
TGCCCGGAATATCCTG	alt_5365_upstream	85	48	97	98	72	84	64	89	52	78
ATTAGCATCGTGTGGT	alt_5365_upstream	69	43	83	62	29	57	51	71	56	73
CGCTAAGATTGGCAGA	alt_5365_upstream	129	84	168	158	106	153	102	154	96	114
TCTTTTGGTCCAGACC	alt_5365_upstream	25	28	29	51	17	38	18	28	23	36
TATCGAATGCACTTCT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
ACATTACTGGGTTCTT	alt_5365_upstream	42	15	47	27	15	29	11	37	11	23
ACGGCCGCACGCTATG	alt_5365_upstream	34	25	40	17	17	25	15	34	7	24
GAACTTTAGATGCTGG	alt_5365_upstream	58	23	60	49	34	54	36	36	33	41
TTGTATTATGGCATTT	alt_5365_upstream	2	1	0	0	1	0	0	2	0	1
ACCTTAATCCAAATCG	alt_5365_upstream	47	21	52	60	31	52	41	40	30	45
CTGACAGTCTTCTTGT	alt_5365_upstream	40	42	50	50	32	27	21	35	29	31
TGACAGCTCCTTTGAG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACTGTACCCAGC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCTTTGCGGTGTT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTAGGCAGTGTCC	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCCAAGATTGGTT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCTGTCGCTTGTG	alt_5365_upstream	132	91	155	130	90	130	103	128	100	112
GGACAGCGTTGGGGCC	alt_5365_upstream	56	34	77	69	51	68	34	59	34	61
GCGGTTCGTGGTCCCT	alt_5365_upstream	59	29	55	60	35	69	30	59	25	60
ATGTGCCTTAACATTA	alt_5365_upstream	15	7	18	5	5	11	4	15	7	8
TTTGATGTTCTTAACC	alt_5365_upstream	32	25	45	37	27	23	22	42	29	31
TTTCGAGGGTTTCCTA	alt_5365_upstream	17	9	15	7	13	20	16	10	12	5
CCTTTAAATGTACCGC	alt_5365_upstream	14	19	21	19	24	13	23	24	21	13
AGGTCCTCTGGTACAA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGGCCTAATATTA	alt_5365_upstream	249	162	355	300	171	277	162	252	176	247
TGCTCATTCGGTTGCT	alt_5365_upstream	5	2	8	4	1	9	0	4	3	1
TCTTCGGGCGTGCCAA	alt_5365_upstream	24	15	26	26	6	10	22	11	17	24
TGGCATCGATTTGCGG	alt_5365_upstream	6	7	6	14	9	12	5	10	6	8
TATCCCATAGCAAGTA	alt_5365_upstream	45	24	43	51	25	28	21	38	27	42
GGCCTTCAGGAAGTAA	alt_5365_upstream	39	31	52	39	17	40	24	40	22	23
CATGCTAGGACAGCTA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTATGAATCTATTCCT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
ACCACTCCGTCTCTCG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CATAGCCCCACCTAGT	alt_5365_upstream	42	24	68	56	24	41	20	53	42	36
CGTCATGGTCCGATTC	alt_5365_upstream	10	6	7	5	2	4	3	6	3	4
ATCATTCTCCTGATGC	alt_5365_upstream	77	52	105	82	50	96	59	106	52	90
AGATATTTACTTTTTT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGCCAATCTTTCG	alt_5365_upstream	119	86	152	135	78	133	84	118	80	108
GATGTATTAGTCATAA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
GGCCATAAATTATCGC	alt_5365_upstream	40	28	57	55	20	46	28	39	15	37
CTGTTTGTCTTTGGTA	alt_5365_upstream	30	24	58	56	28	30	46	47	37	28
TCTAGCCCGTGTTTAT	alt_5365_upstream	54	22	65	49	30	45	44	37	25	42
GCTGCTACGCCAACTG	alt_5365_upstream	6	5	2	5	0	6	0	7	6	4
TGCCCCGCCTCAGGAC	alt_5365_upstream	6	4	6	11	6	14	3	10	1	7
TCAGCCTGGCTTGTAA	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTTCTGTGCTAGT	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
CAACTTACGGGCTTGG	alt_5365_upstream	0	0	0	0	0	0	0	0	0	0
TACTTTTTTTCGTGCT	alt_5976_new	42	22	58	31	31	34	23	50	23	37
GTTTACCTGCTGATTG	alt_5976_new	11	13	15	11	6	9	7	13	9	10
GCACTTGGTTTATGGA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ATTTGTACGTGAAGCA	alt_5976_new	27	33	33	18	37	22	32	22	18	15
CTTTCATCATGCTTCT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ACCTCTTACGGTTGAT	alt_5976_new	24	14	21	23	20	15	19	16	17	18
CCTGGTGTCCCGTTTA	alt_5976_new	89	190	128	137	259	105	199	117	237	94
TGCCAATTGTGCCCTC	alt_5976_new	23	40	23	23	50	15	50	19	54	24
GCGTGCGGTGAGTGAA	alt_5976_new	37	21	56	40	27	27	32	36	30	37
AGGACAATCCGCTACG	alt_5976_new	0	0	0	0	0	0	0	0	0	0
CATATAAATACATTGT	alt_5976_new	11	15	20	18	13	24	12	23	20	16
TAATCCGGTCATGAGA	alt_5976_new	19	28	21	29	30	28	39	32	39	26
TAAACGGAGCTCTGAA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TGAGCGCAGCTTTCGA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TGCCCTCATCTCCTCT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TGCCGACGACGTCAGA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
GTTTCGATGTCATAAT	alt_5976_new	14	10	23	23	15	16	17	19	20	16
TTGCTTGTCATTGTTA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
GCTCTCAACCCTTAGT	alt_5976_new	5	7	6	6	10	11	8	4	11	7
TATTGACCGATGAACC	alt_5976_new	54	56	73	73	73	62	64	54	72	44
ATCTCGCTAACCCTGG	alt_5976_new	148	203	214	183	234	181	209	187	217	168
GGGGCTTATAGTAATA	alt_5976_new	4	4	16	15	3	10	5	5	9	4
TGGTTGTACCGGACTA	alt_5976_new	66	38	66	64	56	54	48	43	54	63
TTAAAATATTGCGGGG	alt_5976_new	63	37	69	72	37	45	48	46	44	65
GTAATAGATTAGCAAT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TTTTTCCTCCCTCTTG	alt_5976_new	15	12	15	16	6	4	9	11	15	9
CGTAAGGTTTCCGTTA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ACCGTTTCGACTATAT	alt_5976_new	5	10	9	5	7	5	9	1	11	0
TGATCTATAACGTCCG	alt_5976_new	56	43	83	57	42	60	50	62	51	44
CGGTTCCTCTTTCCTA	alt_5976_new	23	22	35	36	24	25	23	25	20	29
CCGTTAGGCGGGAGGA	alt_5976_new	16	19	18	23	19	17	38	20	32	13
GACGTTCGATAAGGGT	alt_5976_new	70	55	94	79	52	62	55	85	51	55
TACGGTGAAACTCCTC	alt_5976_new	0	2	1	0	0	1	0	2	2	0
AACCGTGATAGCGCTA	alt_5976_new	37	16	34	41	25	40	26	28	25	34
TACCACCTCAATTGAT	alt_5976_new	34	22	24	36	31	23	27	30	22	28
AATCTGACACTGTGGG	alt_5976_new	62	44	63	53	52	51	44	44	41	50
TGGCTCGCTCGTGCTA	alt_5976_new	16	23	20	17	11	13	18	17	13	13
TATATCTCAGACCGTC	alt_5976_new	27	14	35	20	19	27	11	19	16	14
GGCTCCCAGTATTATT	alt_5976_new	8	14	18	9	11	16	12	17	7	15
GTGGGACCTATCTTTT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TAGAGATTGCGGCCGC	alt_5976_new	13	12	18	20	11	13	10	14	6	12
TACATTGAACGCATGG	alt_5976_new	19	10	29	16	9	15	19	20	12	25
GTGATAACTTTGTCAA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
GCACGTGCTTTTGTAC	alt_5976_new	129	121	194	155	142	123	145	121	132	125
TCCACTTTGTCAGCGT	alt_5976_new	46	48	66	35	44	38	42	43	36	52
CCGAATATGGCGACCA	alt_5976_new	79	35	98	74	66	74	54	74	43	62
CCTGGTGTCCTGTTTA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TTACTTGCCGATGCAT	alt_5976_new	45	17	43	36	28	46	33	31	26	25
CTCGTGGTCCAGTCTT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
GGGATACAATAGTGGT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
CGTGACAGAGCTCATG	alt_5976_new	57	29	60	58	26	55	35	54	40	36
TCCTACCTCTCCAAAA	alt_5976_new	323	222	441	330	184	283	252	259	223	219
ACCCGACAGTCATGTT	alt_5976_new	42	18	32	24	34	29	30	33	31	34
TAGTGAGCGTCTCTGT	alt_5976_new	73	63	104	69	60	80	48	59	44	71
TAAGACCTCACGATTT	alt_5976_new	0	3	3	0	2	2	7	4	2	0
CCTTATGGACGATACT	alt_5976_new	113	93	119	139	80	106	99	114	94	122
TTAGTTTCCCTTCTGA	alt_5976_new	65	44	85	78	48	92	41	73	53	53
CGGTGCTTAGCGGGAT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
GTAACTTTTCGCGGTG	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TGATTATCAATTTTCG	alt_5976_new	21	12	30	17	11	14	5	9	10	16
TTCCCTGTGGCTCCAC	alt_5976_new	11	9	27	19	17	17	11	18	16	21
TGGTGATCTGCACACG	alt_5976_new	0	0	0	0	0	0	0	0	0	0
GTGTCGTTATTATACG	alt_5976_new	19	14	20	12	18	21	15	11	17	14
AACCCAGTTGTCGCTC	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ACCTACTATTATTGCA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
AGGGGCATAACGCCGG	alt_5976_new	17	13	22	22	9	16	11	25	21	23
GCTTACCAGCAGCCCA	alt_5976_new	400	268	496	426	296	369	284	404	289	343
AGGCTAGCTCTTAGAT	alt_5976_new	2	4	5	2	0	2	2	6	0	1
AAGTGTCCTGGCTCAT	alt_5976_new	13	14	23	24	18	20	17	6	12	17
CCCCACCTGCCATTGC	alt_5976_new	12	22	27	17	24	14	28	16	31	9
GTATTATAGCGTAGTT	alt_5976_new	61	40	78	55	41	57	47	43	55	58
TCACTATCGTAATAGT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
CGATGAGGCGAGGGTT	alt_5976_new	31	31	48	40	27	30	27	28	31	20
AATACAATGTTTACTG	alt_5976_new	42	21	58	43	28	41	29	40	25	35
CGGTCGTCGGCGAGTA	alt_5976_new	7	16	11	9	19	13	15	15	12	6
GCGTGTATCTGGACTT	alt_5976_new	286	183	312	254	191	244	204	238	221	226
CCTCATTAAGTAGCAA	alt_5976_new	30	26	33	19	15	21	20	19	30	28
GCCTCGACCCTGGGCT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ACTTATGCTAGAGGTA	alt_5976_new	39	20	22	27	20	18	14	20	17	28
CCTTCGTCTCTTGGGT	alt_5976_new	15	21	26	24	28	28	19	20	16	13
ACAATTGGGCATCGTG	alt_5976_new	14	12	15	12	10	16	9	7	9	13
GCCAAGATACTCGATT	alt_5976_new	7	2	10	7	5	8	7	10	0	7
TTTCGCGGGCTTTACA	alt_5976_new	5	4	10	5	3	7	6	4	0	1
TACCATCGCATCATTT	alt_5976_new	30	16	42	31	29	22	21	18	20	14
CTACTTGTTTTAGCGT	alt_5976_new	54	29	53	37	30	50	41	27	31	28
TACTCGCGCGTTGTTT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ATATGCCCAATTTGAT	alt_5976_new	58	33	50	56	47	42	40	44	35	58
GCCAATTGCTAGTCTA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
CGCCCCTTGGTTCGGC	alt_5976_new	57	47	64	58	51	50	43	49	54	51
TGCTTGATGGCTGTGT	alt_5976_new	29	24	27	42	27	29	21	17	24	27
TGCCATCATTGATACC	alt_5976_new	8	4	12	9	3	6	4	11	4	6
TATATTATGTGTGTTG	alt_5976_new	24	33	32	23	21	30	21	36	26	20
CTAGTACTAAATTTTT	alt_5976_new	2	4	0	1	3	4	1	0	1	1
TCGGGGACCGTACGAG	alt_5976_new	65	35	64	54	47	53	53	60	44	63
TGAGCGAATAACACAC	alt_5976_new	54	45	65	58	19	56	47	36	52	47
GTTGTACGTACCTCTC	alt_5976_new	8	12	10	16	12	2	11	17	13	10
CATGATAGACCGCGCA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
CAATCTGCAAGGACTG	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TGAACGCTTAACTCAC	alt_5976_new	55	45	79	58	42	44	38	57	44	53
TACATTAAAGGGTACC	alt_5976_new	0	0	0	0	0	0	0	0	0	0
TCAGGTTAATTCCTTT	alt_5976_new	16	14	12	14	11	15	12	19	13	15
ATCCCAAGGGGCCGGA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ATAACGTTGTTGTCCG	alt_5976_new	0	0	0	0	0	0	0	0	0	0
ACATTTAAACGTGTTC	alt_5976_new	39	27	43	40	31	42	34	47	33	47
ATCATATCCTATGCGA	alt_5976_new	95	71	89	83	86	69	63	83	83	77
AGCATACTGCCCTCGC	alt_5976_new	32	23	43	32	29	39	27	32	27	21
ATCCATTAAGAGACGT	alt_5976_new	0	0	0	0	0	0	0	0	0	0
CTTATAGGATGTTCCG	alt_5976_new	42	32	56	42	44	58	43	57	44	57
GGTCGCTCGCGAGTCT	alt_5976_new	61	32	57	59	44	43	29	60	47	56
TACATCTATTAAGGAT	alt_5976_new	57	57	91	65	69	68	52	66	64	79
ATACCAACGATCCACC	alt_5976_new	82	47	95	92	60	87	60	87	60	70
CTGCTAATATTCTTTC	alt_5976_new	229	137	312	240	144	223	166	214	142	212
TCGCCGGTACTCGCGA	alt_5976_new	36	43	23	21	39	27	32	23	47	17
TTATGTCAGGTCCCTA	alt_5976_new	0	0	0	0	0	0	0	0	0	0
AACGCTTTAGTTTCCG	alt_2406_reverse	17	17	22	19	18	13	15	17	22	15
ATGGCTCGTGAAAAAA	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
AACTTGATCAGACCAA	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTTCATCTTGGG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGTATGCTTTAG	alt_2406_reverse	73	117	117	77	98	88	114	79	106	76
AATACGATTCTTGGCT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGGGTTTGAGGA	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTAACTTAAAGGCCCC	alt_2406_reverse	22	39	28	34	42	16	49	21	56	29
TCGTCAATGGGCACTT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTATGGCTCGTTGTAA	ref_2406_reverse	103	130	144	112	109	132	106	99	133	103
TGGTATGCAATGCCTA	alt_2406_reverse	42	48	59	51	63	31	44	35	49	32
AATTCCTGGCTTTACG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTTTACTTGTCTTCGA	alt_2406_reverse	53	37	62	63	64	45	52	51	54	35
TGGTTTGAATCAGCTA	alt_2406_reverse	48	43	58	35	41	38	50	23	45	36
TATGCATTTCTTGATC	alt_2406_reverse	8	9	16	6	11	11	4	17	8	10
GATTTTTGTGTTCCCA	alt_2406_reverse	6	17	14	14	12	7	13	5	15	9
CCCTAATTTGAAAAGA	alt_2406_reverse	19	24	19	17	29	14	24	15	27	12
ACGCCTTTGCGCAGAT	alt_2406_reverse	27	13	26	22	12	17	15	31	12	14
CACCCGGATTCGTGGT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CAGAATTCCTGGATCG	alt_2406_reverse	12	25	10	15	18	13	15	14	15	5
GTCCAATATAACAGAG	alt_2406_reverse	56	45	39	44	43	36	48	37	52	40
TTCACAGTGGACAGCA	alt_2406_reverse	4	5	7	7	7	11	10	12	9	7
ACCCGATATTTTAGTC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
ATTATCTTGCATAGTG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTACGTTTGAATC	alt_2406_reverse	55	60	70	60	76	65	68	52	76	56
ATATCCTTTGCATGGC	alt_2406_reverse	12	15	25	22	16	12	18	17	11	11
AGCTTCTGCTAGTACT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCGGGCCCTGGGG	alt_2406_reverse	91	125	128	96	123	123	127	73	123	86
TTTCAAACCATACATT	alt_2406_reverse	68	72	53	74	69	50	65	53	56	50
ATCCCGCCGCGGCCGG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTTCACTAAACGGGTT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTACTTTTCGGCGACT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGTTCGCCGAGGC	alt_2406_reverse	18	27	27	16	33	20	35	34	28	22
GTCTGGCAATGGCTCC	alt_2406_reverse	4	13	2	11	3	5	10	14	13	4
ATGATTGGTTATAGGA	alt_2406_reverse	28	42	46	22	27	35	45	35	32	25
TACTTAGTGCATCTGT	alt_2406_reverse	10	18	9	6	12	11	22	8	13	6
AGGATTCTCATTTTAT	alt_2406_reverse	18	16	28	12	20	15	12	15	10	10
GAAGCGCGGCCTCCAC	alt_2406_reverse	28	14	29	32	22	19	22	23	19	14
TCATACAGTTCTGTAG	alt_2406_reverse	5	7	11	11	5	8	10	5	8	15
TACTGAGTACTCCTTC	alt_2406_reverse	33	66	21	21	80	30	76	28	75	32
TTCTGAGCTACATTTC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GCTATTCGATAGCGAT	alt_2406_reverse	0	0	0	1	0	0	0	1	0	0
TATATCCGCCCAATGT	alt_2406_reverse	37	32	45	32	36	25	35	25	45	29
TCTTCTACGTGATGGG	alt_2406_reverse	24	26	19	16	22	14	16	21	17	18
TCGTGTTCTGTTAACC	alt_2406_reverse	56	64	73	72	69	50	63	59	86	54
CTCTAGAACAGTTGAC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TATTAGGTAGTATATG	alt_2406_reverse	52	52	62	35	63	47	68	52	85	40
TGGCTATGGAGCTTCA	alt_2406_reverse	77	51	56	42	52	56	47	41	40	47
ACAATCCATCCCGTCA	alt_2406_reverse	76	85	87	74	80	57	86	55	100	49
CGTTTATGTGTTAATA	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTAGCCATTACGG	alt_2406_reverse	66	83	80	63	76	54	73	57	76	64
GCCCGTCGCACCATGT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGAGACGATCAAA	alt_2406_reverse	45	69	62	61	68	50	59	50	57	55
AATTCGGCATTCTCCA	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTGTTTTATCTAC	alt_2406_reverse	138	156	149	146	159	143	178	159	153	125
TACTTCGTCATCATTT	alt_2406_reverse	66	64	74	65	59	43	62	38	64	55
AGGCTTGAGTTCAGAT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TACCTTCCGTCACATC	alt_2406_reverse	13	14	18	19	15	13	16	13	18	9
GAAGGGTCTAGTCAAT	alt_2406_reverse	38	36	35	26	28	30	41	20	36	20
TATAGGTCGCTGGGTG	alt_2406_reverse	5	6	2	5	6	12	6	2	3	4
GTCTCTACCTATGCCC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TATTCACGGATGACTT	alt_2406_reverse	37	35	36	46	34	36	35	31	33	31
GTGAGATCTCGTGCAC	alt_2406_reverse	13	9	11	14	5	13	11	12	13	5
TCCCTTTCTCCCTGCT	alt_2406_reverse	3	11	6	4	4	5	9	7	6	7
GCGACGTACACGCACT	alt_2406_reverse	35	37	36	43	43	31	31	33	39	37
TATTTCTGCGCTATGC	alt_2406_reverse	35	70	64	54	44	65	43	38	59	45
GCACGTTCCAGATGAC	alt_2406_reverse	65	89	84	71	93	73	73	63	96	44
GTTAAAATAAATCATT	alt_2406_reverse	30	29	35	40	34	33	44	38	26	34
TCAAAAATCACTGATT	alt_2406_reverse	25	25	15	25	16	17	27	19	18	19
CCGACGTTCGGTCATC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGTCATGCTGCTA	alt_2406_reverse	1	3	4	2	1	3	4	3	4	0
CCGCCATGCTTGCTTC	alt_2406_reverse	7	20	14	20	12	12	13	11	8	17
GGCTTCAACGGTTTTT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTTAATGGTTTTG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TACTTGGTACCAATTT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
ATAGGGCCGGTGCGCG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGGACCATGCGCA	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TGGATGGGTTGGTTCT	alt_2406_reverse	36	36	45	34	49	40	40	37	59	32
CTCTTTAAATCGAAGC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGGGGGTAATTAT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGGCTATACCGTG	alt_2406_reverse	2	6	8	6	4	4	5	7	3	6
TCCTGTTATGCAACAT	alt_2406_reverse	7	10	8	8	9	5	7	4	10	8
TGCATTGCACTGGAGT	alt_2406_reverse	9	23	15	13	10	13	15	17	16	13
TCTCCTTCGGTTACGA	alt_2406_reverse	84	89	94	66	88	48	86	82	82	69
CCCTTGGGATGTTACT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTTATTCTTGTCG	alt_2406_reverse	8	12	13	13	11	12	10	8	11	14
TAATATGAGCACAGCT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCATCATTTTGTC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTGCGGCGGTCTG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GGTACATGCATGATTA	alt_2406_reverse	6	4	18	9	8	7	11	6	11	8
TTACCTCCCTCCAATG	alt_2406_reverse	12	20	18	17	29	15	34	16	27	9
CGGCCCTCCCTTTTGG	ref_2406_reverse	50	41	50	44	28	54	45	35	44	50
GTATTTCTACGGTGCC	alt_2406_reverse	23	12	25	18	19	12	36	18	26	15
TTCTGTGCTACATTTC	alt_2406_reverse	164	158	180	171	164	161	205	158	197	121
TTTCCCTAATACATCG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTGTTACCTCTCC	alt_2406_reverse	93	151	117	91	140	86	144	77	133	73
GGCTCCGGCGAGGAAG	alt_2406_reverse	19	23	20	13	24	17	32	16	20	13
TAAGGGCTCACAATCC	alt_2406_reverse	22	38	28	23	33	26	20	16	35	23
CATGTATGGTCTGCGG	alt_2406_reverse	82	85	78	84	95	77	95	76	82	57
CTGCGTGGACTTACTC	alt_2406_reverse	12	22	16	18	19	14	21	20	28	18
CTACCTAGGTACTTGA	alt_2406_reverse	3	4	3	1	6	4	8	2	4	0
ATAGTCCTTATACTCC	alt_2406_reverse	49	54	56	42	40	40	49	27	64	38
AGGCGGCACCCTATCG	alt_2406_reverse	68	83	79	49	86	65	75	69	82	80
TTTCACTACCGCGAGC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGAGTTCTCTCCG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GAAGGATTAACGTGCC	alt_2406_reverse	52	44	64	34	41	40	42	42	60	46
GGATGGTGCAGGTTCA	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GACCATCTCCTAAGGT	alt_2406_reverse	16	33	34	27	26	18	31	23	31	20
TAAGATCGTTTTTGGG	alt_2406_reverse	22	30	35	26	18	26	37	12	30	15
CCCGCTAGTCACTCAG	alt_2406_reverse	5	29	14	6	27	5	22	6	18	9
GCCTTCCCATCCGGTA	alt_2406_reverse	74	68	87	69	93	73	75	62	94	56
CTAGTTGACCGTACGA	alt_2406_reverse	1	2	0	1	1	2	1	1	1	2
TTGAGTAATACAATCT	alt_2406_reverse	18	18	21	16	15	6	19	10	17	17
CCACCTTGGTTTTACC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGCGTTTCTATTA	alt_2406_reverse	4	8	4	8	3	4	7	1	11	6
GCGATTAACTAACGCG	alt_2406_reverse	9	13	12	14	13	11	10	14	11	14
TGCAATTGTAGTTAGG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGGTTTTCTGACT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CACGTCGATTGTTACC	alt_2406_reverse	20	11	12	14	16	19	19	14	17	14
ACCATATTTTGTCCAT	alt_2406_reverse	50	56	59	45	62	49	45	33	65	46
GTTCTTATAATCTGTG	alt_2406_reverse	20	28	31	21	30	19	27	19	22	14
AGACCGAAAAAGTATT	alt_2406_reverse	62	67	73	76	74	67	82	72	87	54
GGCTCTTCTAATGGTG	alt_2406_reverse	9	10	8	19	15	13	12	8	13	14
GGACACAGTGAACGAG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGCGCTCTCTTGG	alt_2406_reverse	1	1	0	2	1	2	0	2	1	2
GTACCCGCTGGTCTGT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTTATGTACCACG	ref_2406_reverse	8	11	20	8	15	6	16	10	7	14
GTGATCAATGAAAGAC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTCTGCCGGCCTG	alt_2406_reverse	1	4	3	5	6	3	4	1	8	2
TTATGTCTTTAACGAT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGTTTGGGTTCTA	alt_2406_reverse	32	33	40	28	45	38	45	25	43	27
CGCTGGATACGTATCC	alt_2406_reverse	173	145	207	183	165	149	167	159	168	152
CCTGGAACTTGAGTCT	alt_2406_reverse	5	8	7	2	10	1	9	1	7	4
TCTGACTCCTGTCTAG	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAGGCTACCGAGT	alt_2406_reverse	8	13	9	8	12	10	23	10	11	11
CTACTGCCATGGGTTT	alt_2406_reverse	7	5	7	6	7	5	7	7	8	8
CGTGACTTGGATACAG	alt_2406_reverse	54	44	46	40	44	52	43	44	44	40
TAACGGATGCCTAAGG	alt_2406_reverse	35	17	34	18	22	23	22	22	33	19
CACGGTCCACAATTTG	alt_2406_reverse	6	5	6	8	9	7	5	8	5	4
GATCGATAGGCTCAGT	alt_2406_reverse	24	25	30	17	31	24	27	21	25	25
GGGGTGAAGGACATGG	alt_2406_reverse	36	16	28	23	28	26	34	22	41	26
AGTGACTGGTGGGCAT	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTGGATTGATATGACC	alt_2406_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTCTTTGCATTTA	alt_2406_reverse	6	9	8	10	13	10	13	17	14	12
TCGAAACCTTGAGGCA	ref_2406_reverse	9	7	11	14	6	10	15	10	11	12
GAAGCCTATCGATAGT	alt_2406_reverse	9	8	13	5	12	4	7	4	11	4
AAGCATCGCATCTCAC	alt_2406_reverse	9	5	7	10	9	5	4	8	9	9
ATCCACGCAGGGGGTC	alt_2406_reverse	11	10	13	15	7	7	15	6	12	8
TTGATGGGAGGTACGA	alt_2406_reverse	104	107	153	127	127	110	117	97	108	99
TTTTCGTGTGACTCGC	alt_2406_reverse	44	34	63	40	46	42	46	29	47	39
TCGGTGCAGCCTTAGC	alt_2406_reverse	12	15	25	9	15	8	14	11	16	4
ACTTTAGTCCTCATCA	alt_2406_reverse	44	65	76	76	52	52	65	56	82	56
CATGTCGGCAGGGTTC	alt_2406_reverse	60	53	72	82	47	70	51	81	77	62
GACGGCGCAAGCAAGC	alt_2406_reverse	27	39	29	22	28	28	34	28	31	20
AATATTGACCGCCCGG	alt_2406_reverse	23	37	24	18	22	20	24	20	20	18
GTCACAGGTGGCTTGC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
AGTCTTTTGTGCTAGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
AGTGATCGGATTTGGA	ref_5670_new	57	37	53	48	38	39	50	50	55	48
GAAATAGTTTGGCTCT	ref_5670_new	26	28	24	21	23	22	39	22	33	30
CTTAGCCGAACGCCTA	ref_5670_new	77	89	67	61	72	60	91	62	76	58
ATAGGCCTGGTTATCC	ref_5670_new	42	30	48	40	29	37	33	30	39	31
ATTACGGTCAAAGGCT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
ATCATAACAAACGCCT	ref_5670_new	93	66	106	94	72	66	71	69	54	81
TTCAGGCTAGTCGCTG	ref_5670_new	1	2	0	1	3	0	1	2	2	2
TCCGTACAATTTCAGG	ref_5670_new	17	14	25	15	17	18	15	17	11	14
TGCTTTATGTACATAT	ref_5670_new	14	22	19	20	22	17	16	16	22	13
TTTCGAGTTTTCCTTC	ref_5670_new	5	13	14	8	14	14	5	8	10	9
ACTCTATTCGGGATGC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CCTTTGCTAGTCGTCT	ref_5670_new	91	70	94	108	97	102	80	99	100	84
TTGCCGGGTCGCTGAC	ref_5670_new	38	31	36	35	22	42	48	31	44	34
CAAGTTCACGACCCTC	ref_5670_new	3	6	7	4	6	7	5	5	11	6
TGCCGCGGCACAGATC	ref_5670_new	63	42	76	61	50	54	48	45	34	54
CTCCTCAGGAACTACA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CTTTTGGCATCCCTGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TGGCACACCGAGGCAT	ref_5670_new	29	27	40	21	29	41	29	30	21	18
CTTTCTGAATGTACCT	ref_5670_new	3	14	8	7	3	6	10	8	6	5
CATGTTTGCAGCCCTA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TGCGTATGTTCAAGAC	ref_5670_new	5	3	4	1	1	2	1	4	1	1
CATCTAACGTCGGCCG	ref_5670_new	126	100	141	125	88	93	92	108	88	96
GCCATCGACTAGGTTG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTCACAAAATG	ref_5670_new	21	15	28	44	20	25	24	23	27	26
ATGGTTGCACGTATTA	ref_5670_new	94	103	149	99	103	102	103	116	109	101
ATGGGGACATTATCTC	ref_5670_new	57	60	96	64	43	53	63	73	58	71
TCGCGAAAACAGAAGC	ref_5670_new	59	51	66	54	48	45	61	44	62	46
GTGGTTCGAGCTTTCC	ref_5670_new	24	30	22	19	22	23	19	22	24	13
TCGGGCAACTAGCTTT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TGCACCCTGAACTGCG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTGCGTTCTTTACCTA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CCATAAGGTTAGTTTA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTGGATTTTAGCAGGC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTAATCAAGCGGACGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TGGCGTCAGTATGGCA	ref_5670_new	39	27	47	39	32	52	28	24	28	48
CGTACATCTTTTAGAA	ref_5670_new	20	25	25	28	31	24	23	13	21	12
AACGCCGTATTTGGCG	ref_5670_new	16	20	33	19	8	18	18	18	19	13
ATACCTTCTTTCTAGC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
AATTGGAACGAAATAG	ref_5670_new	56	43	60	57	54	53	47	52	51	46
TACGTGAAAAGCATTC	ref_5670_new	90	81	98	69	97	68	86	77	78	70
TATATGTACGGTGTAG	ref_5670_new	33	32	44	56	54	35	45	50	57	38
CATCTAACGTCAGCCG	ref_5670_new	1	0	0	0	0	0	0	0	0	0
TTCTTCTGGTTATAAA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GAGCGGTAGATAGGTT	ref_5670_new	64	53	61	64	65	74	59	50	64	64
TATCTTATCGCAGTCC	ref_5670_new	18	16	33	15	19	24	19	16	9	17
ACCCGGCTTTAGGTTT	ref_5670_new	69	81	109	113	75	92	62	84	79	64
GAGTACATACTGAAGC	ref_5670_new	60	41	58	47	65	30	60	61	42	41
TGCCCACATCTGTACT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GTCACGTTTGGCAGTC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
AATTTAGATAGTGTTT	ref_5670_new	42	36	45	31	33	43	27	42	43	28
GTTAAATTCAGGACCA	ref_5670_new	16	17	21	24	17	18	17	15	30	18
CTCGGGCGTGTGCGTT	ref_5670_new	29	76	35	38	84	33	96	27	87	21
TGTGCTCGTCTCTGAC	ref_5670_new	5	5	11	5	5	7	4	6	6	11
TTGCTCGCGTGTTGAC	ref_5670_new	329	321	424	349	277	289	371	320	374	318
AAACAAAATTTTTCCG	ref_5670_new	51	38	70	41	37	45	45	37	39	48
CTTCCTCTTCAAGTAC	ref_5670_new	0	0	3	2	1	1	1	1	1	2
TTCGCACAACTGAACG	ref_5670_new	34	35	50	55	61	46	41	47	53	26
TGTTGCGTGCAGCTAA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GATAGGATCGCGGGTC	ref_5670_new	43	36	45	48	36	43	44	51	44	63
TGTTGACTCCTACTGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CTGAGCGTACATTAAC	ref_5670_new	39	15	38	20	27	24	27	25	26	21
CCACCAGCTTTGAGGC	ref_5670_new	17	17	29	28	11	17	16	27	15	17
TGTTGTTTATCAATAG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TACGCAGTTAAAAGCG	ref_5670_new	54	56	84	65	51	60	62	45	61	69
CACGCTAGTTTGTGGC	ref_5670_new	0	4	1	6	4	1	1	2	1	4
CAAATTACTTGGCAGG	ref_5670_new	69	64	107	79	91	69	71	88	64	95
TCCAAATTCTAGAATG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GTGCCCCGTTCTCAGG	ref_5670_new	5	2	17	2	8	9	9	8	13	7
ATAATATGCTTTCGAC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTAACTAAAATAATGG	ref_5670_new	51	62	98	67	52	55	48	71	35	61
GCTCAACCATGTCAGG	ref_5670_new	101	110	130	110	110	102	121	86	115	74
CTGGTTACACGCTCCC	ref_5670_new	22	94	34	39	80	27	66	38	89	22
TTAGGTTTCTATGGTA	ref_5670_new	42	32	49	52	27	54	44	25	32	35
GTTTGCGCTCCAGCAC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CCAGATTATGTTTTAT	ref_5670_new	11	23	20	16	15	12	17	12	7	9
CCCGGACACTGTAATT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CCCGGTAGACTACCTG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
ATTTGAGCAGAGTGTA	ref_5670_new	26	24	58	25	27	39	32	29	29	27
AGCCTCCACAATCTGG	ref_5670_new	67	50	82	60	52	46	58	62	76	57
GGAGGGTGTGGGATAT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GTGTCATCAGTCCTGG	ref_5670_new	12	11	15	17	14	14	13	16	13	15
GTAACATCCCCATCAC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GGCACTACTGGTTCGA	ref_5670_new	88	76	104	71	53	70	60	69	76	69
ATCTAAGTAGACCGGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TAATACCCTCTGATAC	ref_5670_new	64	66	70	62	62	56	60	58	54	56
GACAATTTAGGCTTAG	ref_5670_new	42	39	50	35	46	36	38	48	38	35
GGTATTCGGTGTCATG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CCATCCTATGTAACCA	alt_5670_new	23	44	31	28	49	22	48	29	49	23
GGGTCGGACCCCAGTT	ref_5670_new	8	8	14	8	3	8	6	4	8	7
CATGTATCACTCGTTC	ref_5670_new	1	3	2	4	12	10	5	1	7	5
GCACTCAGTAATCGTC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GAAACTCTCCTATTCA	ref_5670_new	147	101	158	142	148	157	140	135	134	132
CTTCAGTGAAAGGAGG	ref_5670_new	300	270	341	284	222	286	232	258	265	233
GACGTAGAGTTTAAAG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GTGCAGTCTTATTGCA	ref_5670_new	15	10	16	11	12	11	21	10	9	13
TATCGAGCATGTGGGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
AGGGTCTCCCGTATCG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TACTCATCACTCCTCA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GGCTGTATCCTGCATG	ref_5670_new	10	18	15	13	17	15	19	13	22	11
CTTGTGTTACCGACAT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GTTGTCTCGTGTCCCT	ref_5670_new	32	47	57	54	42	37	35	38	40	35
CTAGCCGTACTGTATA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTCGTCGTACGACGGC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
ATCTGATAAGGCAGGG	ref_5670_new	25	9	23	20	17	18	23	14	22	15
GGACCGGATTTAACGG	ref_5670_new	10	8	10	6	7	11	15	10	11	5
ACATCAGAGGCCGTGC	ref_5670_new	101	72	116	111	100	100	110	85	100	104
AACAGACCAGATATAT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GATCCTAACACCGCTT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
AGTTTCTATTGACCTT	ref_5670_new	11	5	12	6	7	6	16	11	6	3
TTGGCTACTCATGGTG	ref_5670_new	72	72	108	86	100	63	78	59	85	68
TTCTTAAAGGTACCGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
ATCAATACGCTACTCT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TACATTGCCGCTGTAC	ref_5670_new	78	44	73	55	56	51	72	49	68	53
TGCCATTTGGCCACTG	ref_5670_new	9	17	10	11	8	5	6	12	8	7
CAGGGGGAGTACCAAA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GATGGTGTGACTTTTC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TACTCAGCTACCTTTA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TGTTCTGTGCTCTTCC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
ACGTTCCTCGTAGTGT	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GTGCGTGAAGCGAACC	ref_5670_new	31	10	25	22	16	23	16	24	26	9
GCAGGTTTAAAATAAG	ref_5670_new	47	27	33	33	30	28	34	39	31	22
GGAGCACGGTAGGTAA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
CTACAAAACTTACTAA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTTATTTTGTCTATCA	ref_5670_new	62	49	51	49	51	51	42	54	44	51
GGTCCGAGCATTGATA	ref_5670_new	26	24	30	37	26	25	28	32	34	17
CGATAGGGAGGGCCCG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTGTGTTGTCCAACCT	ref_5670_new	12	10	14	17	11	14	11	15	7	16
CGTCTATCTGGGCGTA	ref_5670_new	15	18	15	19	25	12	25	18	28	12
CAGAAAGCCGCTAAAC	ref_5670_new	3	3	5	5	4	6	2	4	2	4
GAGCCCAGCATGATCT	ref_5670_new	104	113	132	115	117	111	105	113	106	108
GGACTTATCATTCATG	ref_5670_new	0	0	0	0	0	0	0	0	0	0
GCCCTTAGCGAGTGTA	ref_5670_new	25	29	29	28	33	32	32	23	25	24
CTAAAGGATGGTTCTA	ref_5670_new	0	0	0	0	0	0	0	0	0	0
AGTGAGCATAGTGCTT	ref_5670_new	25	26	34	28	16	22	24	16	21	19
GTTTCCCATTTTGGGC	ref_5670_new	0	0	0	0	0	0	0	0	0	0
TTTGATTTAGTTTTTT	ref_5670_new	32	30	24	19	18	21	31	9	26	10
GGTTCCTGTTATAGGG	ref_5670_new	27	33	27	33	27	28	30	16	23	25
TTTATCAGTATGCCTT	ref_5670_new	128	79	133	99	89	118	85	96	71	110
TCCCGGTAGCTGGTCG	ref_1093_reverse	26	24	22	17	27	21	25	23	28	24
TAAATTTCATATTATC	ref_1093_reverse	22	43	43	40	52	31	57	32	49	30
GGATTTGTGGACAGCT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGAGAAGGCGGTG	ref_1093_reverse	48	57	36	31	62	48	52	31	59	35
TGACTAACTCGTGTGG	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTCCAAATGATTG	ref_1093_reverse	10	10	7	6	9	2	13	7	18	1
TTTCAGCTATCCCTAC	ref_1093_reverse	19	33	40	23	62	9	50	25	65	18
TACAGTATTCTTGATT	ref_1093_reverse	25	35	16	17	45	25	40	29	49	23
CTATCTGTAACATGCA	ref_1093_reverse	44	23	64	43	23	50	28	51	26	26
TAGGTCCCTGATGCTA	ref_1093_reverse	12	8	8	3	10	4	10	6	18	7
AATGAAGACTTAAGGG	ref_1093_reverse	33	36	23	21	32	17	27	23	34	3
CTGGCGTTTTTAATCG	ref_1093_reverse	20	29	26	20	40	33	40	25	32	23
CTATTCAGGCTTTTTG	ref_1093_reverse	3	9	4	7	2	4	5	1	4	6
TACCCAGTCGGGCCGA	ref_1093_reverse	9	26	15	4	10	5	25	9	23	20
ATGGCCACCTGAATTC	ref_1093_reverse	16	60	47	34	75	21	70	33	74	39
CATCTTCATCTTAGAT	ref_1093_reverse	19	21	11	8	16	13	24	12	27	13
TTAGTTACAGGTTCTA	ref_1093_reverse	79	170	109	78	190	87	189	86	180	95
CGGTAAAATGTTGCCG	ref_1093_reverse	10	10	8	11	10	8	11	7	16	12
TTGGGCTCTATTTGTA	ref_1093_reverse	44	68	47	34	84	52	71	52	90	47
CGGCTGGACCTAAGTT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAGGCTGTATTGT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
GTACAGTCTTCCCTGT	ref_1093_reverse	0	3	2	1	3	1	1	1	1	0
AATTAGACAGGCATAC	ref_1093_reverse	30	37	31	42	64	25	34	19	48	31
TTCGGGTACCACATGA	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
AACAACGGGGAAGCGC	ref_1093_reverse	46	79	67	46	73	39	89	40	94	44
CAGAGGTCGCCAATGT	ref_1093_reverse	36	52	15	23	45	13	52	19	49	27
CCGGAAGAAACACTTC	ref_1093_reverse	6	24	20	11	28	9	28	6	34	9
GTTTTAAAATCTAAAC	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
CCGTAGGTACTAACTA	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTCATATGGATGTACA	ref_1093_reverse	16	21	13	13	28	5	21	17	24	11
TAGGCTGGACCAAGTT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TCTCATAGCTATGCCT	ref_1093_reverse	13	21	21	21	17	11	29	14	19	25
TTCTAAGGATTGTAGA	ref_1093_reverse	59	103	64	63	95	38	88	56	104	48
CATCAGTTTCGGTTCT	ref_1093_reverse	13	22	23	16	25	12	22	14	20	16
CGCCTATGTTACGTGG	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TACCTGACAACTGGAC	ref_1093_reverse	25	58	43	26	61	12	56	23	50	31
TTCACTTTTCGCTTTT	ref_1093_reverse	23	29	18	19	24	13	26	23	24	23
ATCGCCGAGGCCCCGC	ref_1093_reverse	5	11	5	5	6	3	8	4	6	7
GCCTCTCTGTCTGATT	ref_1093_reverse	52	24	55	54	37	40	26	44	30	40
CTTCGAGCTTTCCCTA	alt_1093_reverse	6	5	9	6	10	3	6	7	10	5
ATAGTTCACCGCAAGA	ref_1093_reverse	24	34	16	18	29	20	33	19	29	13
TTGAGACCCGCTCTCC	ref_1093_reverse	5	2	9	7	8	4	7	5	3	3
TTCGGCTAACTGTAGA	ref_1093_reverse	0	0	4	1	6	0	7	1	1	0
TCCGTACGTATAGTAC	ref_1093_reverse	43	134	81	52	112	40	147	51	124	43
TGAGGTGTTTTCCCAT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGTTAGCTTATAC	ref_1093_reverse	41	46	40	39	55	31	61	25	68	37
GGCCTACGTCAATGAG	ref_1093_reverse	5	16	7	7	15	10	10	5	22	7
ACTGGTGGCCGAGATT	ref_1093_reverse	26	41	23	28	54	30	43	32	52	29
CTCGAAATCGGTAATT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
CCCCACTAATCGGTGC	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
AGACCCCTACTGCTAC	ref_1093_reverse	8	7	5	2	11	12	6	1	11	7
TTTAACCCGTAGCGTG	ref_1093_reverse	42	58	39	33	61	33	55	30	45	22
GGATGGACCCAAAGCC	ref_1093_reverse	13	20	13	9	26	10	22	8	28	15
ATAACGGCTTCTTCGG	ref_1093_reverse	14	26	29	23	32	12	19	24	32	16
CTCGCCATGTCCCTCG	ref_1093_reverse	1	0	3	2	1	0	1	0	1	1
GTAATTCCTTTGCGCT	ref_1093_reverse	18	37	34	18	42	22	38	15	27	17
TATTTAGGTGATTTTA	ref_1093_reverse	39	67	38	39	85	24	89	34	77	28
AGTGCGTTTAGATCTA	ref_1093_reverse	15	25	10	15	23	7	28	7	31	12
TCTGCAGGCGCTCTTA	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGCCAAGTAGCTT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTTACTTCATGC	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
CAATTAATTATGGCCT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCCTACTTATCGA	ref_1093_reverse	42	56	53	39	70	38	81	53	86	35
AAATGTGAATTCCTGT	ref_1093_reverse	56	51	44	30	58	39	58	18	77	36
CATTGCTTGTCCCTGT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGAGGACTAGGTC	ref_1093_reverse	4	11	3	3	7	5	9	3	8	4
AGGGTGTGATATGTGC	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGGGTCCCTTTT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTAGGGGTTGCCA	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTTCACCTCATCTAGA	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
CTAGATGACGAACTCG	ref_1093_reverse	28	22	26	17	34	11	34	17	34	9
TGGGGCCGACGCACTC	ref_1093_reverse	33	52	33	37	46	32	49	30	63	26
TTACATCTGTACCTCT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTTATGGTCTGTAATT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
AGTGGCTTGGCAAGCA	ref_1093_reverse	9	16	8	7	8	12	13	6	21	10
TTTCTAATTCTTTTAT	ref_1093_reverse	105	155	122	128	163	111	175	101	164	102
CGTACGTATCTACTAT	ref_1093_reverse	108	175	151	92	156	94	187	92	180	103
GCACATCGACGTTAAT	ref_1093_reverse	26	45	23	31	44	18	52	24	40	16
GATGAGTGCTTGAAGT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTACCCCGAGTCA	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTCAGGGTCTCG	ref_1093_reverse	9	7	4	9	15	9	15	7	15	6
GGGTTTTTAGCCAATA	ref_1093_reverse	6	18	14	11	15	7	10	13	10	3
CTTCCTCACTCAACGA	ref_1093_reverse	17	40	9	20	27	13	34	16	26	23
GACGGTGGCGAACACC	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
GATAGTTACTTAGCTA	ref_1093_reverse	22	23	15	12	24	19	28	8	34	11
GTAAGGACGGATCCGT	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TATCGGGTCGACCTCT	ref_1093_reverse	12	20	16	14	17	18	29	18	38	14
TTCGGCATCTGAGCAC	ref_1093_reverse	2	9	13	7	3	8	10	5	3	2
TTCCATTGGCATACCA	ref_1093_reverse	10	26	20	8	28	15	27	14	34	13
CTCGTAAGGCTTACCA	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTACCAAAATGTCAGG	ref_1093_reverse	17	32	14	15	30	19	39	14	31	17
ATGTCGGGCCCTTCCC	ref_1093_reverse	9	14	14	12	22	16	14	8	12	6
AATCGCGGTTGCTACG	ref_1093_reverse	22	34	28	19	36	18	26	10	34	18
TGCATTAATGATGAGC	ref_1093_reverse	22	56	48	38	67	32	45	25	46	37
CTGGTTCATTGGTAGG	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCGGGGTTACGTC	ref_1093_reverse	29	54	33	22	40	28	50	18	56	20
TGCACCATACACACGG	ref_1093_reverse	5	10	5	6	17	5	14	1	11	7
GACAGATACCAGCGTC	ref_1093_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCACTTATGCCGT	ref_1093_reverse	28	52	28	27	42	22	29	19	27	10
GCTCGTTAGTTTACGT	ref_2069_reverse	28	73	51	38	57	43	54	34	78	47
CATTACCCGATACTGC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TCTGAAATCGGGCGGA	ref_2069_reverse	22	46	34	35	35	24	39	25	44	29
TCCAGAACTCAACGAT	ref_2069_reverse	26	34	21	14	25	14	23	9	33	21
CTACACGGTAACGTCG	ref_2069_reverse	8	13	3	11	11	8	16	8	14	3
CTAGCCGGTGCAGATG	ref_2069_reverse	96	95	91	96	111	83	122	71	134	96
CGCCATGGCTACTCAA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CTATGGGGCCTGTTAG	ref_2069_reverse	32	42	34	31	43	32	44	24	41	28
ATCTATCTATCCGGGA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
ACACCTGTTATCCAAC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTTGATACGCCCA	ref_2069_reverse	2	3	1	4	8	4	7	2	7	6
GATAACTCTAGCACAA	ref_2069_reverse	7	17	9	9	12	12	26	7	15	7
TTCTTCTGTCATCGAC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
GGATCCCGACATAACC	ref_2069_reverse	22	26	14	26	30	9	17	19	17	9
GACCTAGGTTTTAGGT	ref_2069_reverse	53	90	78	55	91	58	71	58	96	57
CAAAACCCTCTGTCAT	ref_2069_reverse	6	6	7	8	9	15	10	3	11	7
GATCGCGTTAATTGAA	ref_2069_reverse	38	64	66	50	58	43	75	43	80	54
AAATCTGCTCTTTAGT	ref_2069_reverse	49	42	39	38	51	40	59	34	47	40
GCATCTTGATTCCATT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
GCTCATTTACCGCACC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGATTTTTGGCTT	ref_2069_reverse	32	30	28	29	31	19	35	23	27	16
ATCCGCCGACGAAGAC	ref_2069_reverse	8	12	8	13	13	5	6	7	16	2
CGTGAGTAAAGCTAAT	ref_2069_reverse	48	63	55	43	35	46	49	35	63	49
GCGCTGTACTACGTTT	ref_2069_reverse	1	4	6	4	1	1	4	1	3	1
TTTCGTTATACTAAGG	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCTAGCGCGTAGT	ref_2069_reverse	14	23	23	5	32	14	26	12	28	19
TTTCCGTTTCCACCTA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CATTGAAGGAACATCT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGGCGTGTTTCCT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
GTGTAACTATATATAC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TCACCAAGGCTTATCT	ref_2069_reverse	33	101	40	37	106	28	96	37	116	34
GAACAGTGCCTTTTAT	ref_2069_reverse	115	120	99	102	108	116	101	106	118	93
CGTTTCTCTGTCCTTT	ref_2069_reverse	29	20	29	29	24	20	29	27	30	24
TGGGCCATCAAACGCG	ref_2069_reverse	28	26	25	16	30	18	31	20	45	23
ACTAGCGGATTCGCTA	ref_2069_reverse	46	49	45	44	46	47	67	42	54	30
TGTATAACATTTACGT	ref_2069_reverse	16	11	20	9	15	11	26	4	22	7
ACCGGCTGCTTAATCT	ref_2069_reverse	35	50	50	44	44	55	40	41	49	31
CGATAGCTCAGTGTTG	ref_2069_reverse	0	2	2	3	2	1	3	1	2	3
TGATCCTGTGCTCCAA	ref_2069_reverse	52	37	37	44	59	42	32	28	36	45
GTTACTTGCGGTAGTA	ref_2069_reverse	12	10	18	5	16	10	9	12	21	8
GAATTTAGCTTTTACG	ref_2069_reverse	7	15	22	17	22	15	13	7	25	19
CCAGTCGTCGTCTCAC	ref_2069_reverse	10	14	15	10	17	11	10	13	18	9
ATTGTTTTCGCTGCAT	ref_2069_reverse	11	12	18	9	17	6	14	13	11	10
AGCTCTTGGACTACCT	ref_2069_reverse	93	131	124	130	140	105	135	98	186	100
TAACATCGGGACTTTA	ref_2069_reverse	5	6	7	4	5	2	6	6	5	3
TGGCACCGTAATGAAC	ref_2069_reverse	18	25	29	38	29	28	31	25	26	21
GACCTGTTCGATACCT	ref_2069_reverse	0	0	0	0	1	0	1	0	0	0
CCTTCAGAGCGAAACA	ref_2069_reverse	55	76	52	40	59	70	63	38	67	37
ACTCCTTCATTCTGTG	ref_2069_reverse	25	79	39	29	77	35	91	29	81	26
TCCTCTTTATTTCCGC	ref_2069_reverse	43	62	38	40	53	31	51	45	45	33
GCCGAAGAAGCAGCCC	ref_2069_reverse	53	85	63	59	108	61	103	69	75	60
GGGGGTCGCCAATGGT	ref_2069_reverse	5	10	5	3	2	9	6	6	3	6
CGCTGGGTCACCCGTA	ref_2069_reverse	0	3	1	1	1	1	5	0	1	0
TGCCCTCGTCCCGCAC	ref_2069_reverse	20	32	31	25	35	15	21	22	32	12
TCATGTTTAACTTCGC	ref_2069_reverse	57	85	84	68	101	60	107	52	94	56
AATGCGCTACGCTTAA	ref_2069_reverse	140	146	184	151	214	117	156	127	223	130
CTTCAGGAAATCTTGA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CGCAACCTTTTATTCT	ref_2069_reverse	42	43	36	58	57	38	47	44	53	43
ACCGATCGCCTCTAGC	ref_2069_reverse	16	65	29	23	78	19	62	13	61	16
TGGCGTGTATTTGCTC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCGCCCCTAATCG	ref_2069_reverse	30	37	30	32	46	23	29	26	28	21
TTTTTCTGTAAGCCTG	ref_2069_reverse	9	10	12	10	7	13	10	6	24	9
ATGACGTGCAAGTCGG	ref_2069_reverse	43	41	64	35	40	45	47	35	54	39
GAGGTGGGCTACAGTT	ref_2069_reverse	16	17	16	10	24	12	15	8	14	9
GAGCATTAAAATATTT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTGTGGTCAGGC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CAGGAACCATTGGTAA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGCACGCCTTACT	ref_2069_reverse	4	23	20	22	10	18	24	8	15	11
TGGCTTTTCATACTAG	ref_2069_reverse	57	88	69	66	105	67	112	52	111	70
GCCGGCCAGACTAGAC	ref_2069_reverse	23	28	19	15	33	12	34	11	29	10
TACCGCGATCGTTTCT	ref_2069_reverse	10	12	8	10	12	6	16	10	11	7
TTGCGTTAGGATGGGT	ref_2069_reverse	39	23	37	25	23	17	22	16	24	13
CTTATGATGTTGCATT	ref_2069_reverse	33	24	34	38	41	25	41	21	47	23
TAAATGATTGACGATC	ref_2069_reverse	1	0	1	3	0	2	1	0	2	2
GGACCTCATGGTGCCG	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCGCTCGTCGTCC	ref_2069_reverse	7	5	6	3	7	5	2	2	6	8
TCCTCCAATAAGCGAG	ref_2069_reverse	0	7	1	3	4	0	2	1	3	0
TCACTGTGCTTATTGG	ref_2069_reverse	23	12	24	27	17	24	18	20	31	21
GACGTGTGCTACTTAA	ref_2069_reverse	12	6	20	19	18	14	14	12	14	10
TCGGCGAGCCAGCGCC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCGTTTCACGATG	ref_2069_reverse	102	142	115	90	140	98	149	99	163	91
AGGACGCATACTAGCG	ref_2069_reverse	149	163	156	130	179	124	172	98	184	117
ATGATTTAACGACCGC	ref_2069_reverse	24	40	36	32	27	30	36	24	30	22
TGTTTTGATTAGACTT	alt_2069_reverse	125	155	148	118	113	122	160	106	151	94
TGTTGAGCAAGGTTGA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCTGATCTAAGCG	ref_2069_reverse	4	2	2	2	3	0	5	0	5	2
TTGTTAGAGGGGCGCG	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TATAGGCTATAGCCTC	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATCCAAATCTTA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
ACATACGCATCGTGTC	ref_2069_reverse	18	29	31	16	32	17	47	17	31	26
TTGCGGGATTTAGGGT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
GATTTTGCCATGTTTT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGTTGGGGCGGT	ref_2069_reverse	24	37	37	29	43	31	43	31	33	21
AGGAAACTGAGCCCCG	ref_2069_reverse	120	129	172	127	137	101	139	96	134	107
CTTACATCGTGAAACG	ref_2069_reverse	9	13	12	4	9	11	8	3	13	6
TAGATTTTTACTCTTT	ref_2069_reverse	12	21	20	16	18	9	20	12	22	6
ATTTTTCTCTTTTCTA	ref_2069_reverse	38	39	60	46	52	46	55	31	48	45
CGGTGTACGTTTTCAT	ref_2069_reverse	27	40	41	34	39	25	37	22	38	30
CTTGCTAGCATCGATA	ref_2069_reverse	44	56	53	61	87	67	69	54	72	50
CTTCGGTCTCTATCAA	ref_2069_reverse	1	0	2	2	4	2	0	1	1	0
TTTTTACCGTTGCAGA	ref_2069_reverse	36	56	55	41	41	44	51	43	56	26
ACCTCGACGCATTTAC	ref_2069_reverse	7	20	9	11	15	13	9	7	19	8
AGTTCGACTGCTGCCT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CTGTAAGAGCCATTAA	ref_2069_reverse	5	6	6	4	2	7	10	4	6	3
TATAATTTCACCGGGA	ref_2069_reverse	7	3	4	5	9	7	6	2	3	7
GTGAGGGTACTTATTA	ref_2069_reverse	6	19	14	14	8	9	10	6	23	7
AATTGTCGCACACGTC	ref_2069_reverse	72	108	88	65	91	71	86	77	84	65
GTTATGGTATCTTACA	ref_2069_reverse	19	23	20	18	22	19	23	10	38	8
CAGTATATAGAAGCGC	ref_2069_reverse	54	84	74	70	74	57	83	60	78	56
TATCCCCATCTGGTTG	ref_2069_reverse	13	16	21	13	23	14	28	19	23	19
AATTTTGGACGAGGAG	ref_2069_reverse	121	126	180	138	166	130	145	119	159	89
TTCCTATTAGCACACC	ref_2069_reverse	36	34	42	34	47	31	49	21	56	34
TTTTTTTGTCATGAGA	ref_2069_reverse	10	12	11	20	16	11	10	9	14	7
GCCTTATTCGTAGAGT	ref_2069_reverse	33	37	25	31	62	28	47	25	37	27
CTTCTGCTACTGCTCG	ref_2069_reverse	9	8	7	4	8	5	16	4	10	5
TGTTTTTCACGGACCT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
CGTCATTATGTGCCCC	ref_2069_reverse	24	38	26	23	31	19	44	25	57	28
GTGCTACCAACAACAG	ref_2069_reverse	18	10	29	5	9	5	18	14	16	9
CTTGATCGCTCGATCA	ref_2069_reverse	14	12	8	8	10	13	12	16	10	6
AACAGCTTAGGTCTTA	ref_2069_reverse	5	9	7	4	7	0	3	6	8	3
AAGCGCTCTTCTTGTG	ref_2069_reverse	126	142	159	117	123	116	164	103	173	88
GTTGCAGACCGAACTA	ref_2069_reverse	69	72	58	52	64	39	71	56	82	48
ATTCTGTCTTTTCGTT	ref_2069_reverse	9	5	8	5	9	8	7	10	8	9
CAGTCTTCTGATCAGC	ref_2069_reverse	17	26	27	25	21	18	22	17	29	19
GGGATGCTTGCTCTAG	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTTGCTCATTAGT	ref_2069_reverse	15	22	38	18	19	11	21	24	33	15
GCGTACGGCTCCAGCA	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
ATTAAATATTGTTCTT	ref_2069_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTGGGATTATTTA	ref_2069_reverse	43	57	61	58	53	38	48	40	44	44
GTGTAGTTCATCCCCG	ref_2069_reverse	7	35	12	12	52	14	52	14	51	8
TGCGAGGTCAAGGATG	ref_2069_reverse	36	48	32	31	42	39	44	25	32	20
GGGGTAAGACATTTTA	ref_2069_reverse	31	36	38	33	37	46	44	32	49	33
ATTACCAGGTCTGGGT	alt_5882_new	38	29	34	37	21	30	54	28	46	26
ATGTGCTTCCTCTACT	alt_5882_new	181	195	209	178	190	157	212	162	177	153
TCGCAATTTAATTGCA	alt_5882_new	59	75	63	59	64	50	72	62	68	57
CGGTGGATGTTATTTC	alt_5882_new	0	0	0	0	0	0	0	0	0	0
GCGAGGTTGAGTCAGA	alt_5882_new	404	375	517	448	406	372	464	388	481	366
GTTTGGTTATCGCAGA	alt_5882_new	22	15	25	18	22	12	27	13	27	8
GTGCGTACTCGGATGG	alt_5882_new	179	193	157	166	215	135	193	134	221	139
ACGGCATTGCTATTGG	alt_5882_new	219	237	328	228	220	213	225	219	240	201
GCCGCAGATTAGTACG	alt_5882_new	31	25	33	30	35	26	40	29	32	20
AAAGCGGGCTCTGTAC	alt_5882_new	61	63	85	54	53	53	51	63	73	73
CTACGTAATAGCTATT	alt_5882_new	0	0	0	0	0	0	0	0	0	0
TCGGTTTTTCCATCTC	alt_5882_new	0	0	0	0	0	0	0	0	0	0
TAGCATAAGTATTTTC	ref_5882_new	57	45	67	50	54	45	71	50	54	45
ATAGCCCTGCCGCGTT	ref_5882_new	24	18	24	30	27	19	33	29	34	16
CTAGCCGCGATCGAGG	alt_5882_new	9	7	6	3	10	6	7	11	6	7
ATCAGCCCCGCTCCCG	ref_5882_new	11	16	19	23	15	14	14	13	16	10
TTATCAGACACGCCGG	alt_5882_new	7	9	13	4	9	4	6	7	11	16
ATGAGGTGGATGGTAC	alt_5882_new	0	0	0	0	0	0	0	0	0	0
CGTTGTACGCCATATA	alt_5882_new	14	12	17	10	2	9	8	13	12	9
CGTGCCGAATTGTCTC	alt_5882_new	17	38	28	24	29	12	34	15	32	29
TTCGTAGGAATGTGGC	alt_5882_new	63	75	90	71	73	39	60	60	70	63
TCTCCGCACTGTAATC	alt_5882_new	3	11	4	2	2	5	5	3	9	1
CTGCGATCCCCAATCG	alt_5882_new	85	90	102	98	105	84	100	75	112	82
CCGGCCCGCGACGACC	alt_5882_new	286	258	318	267	251	212	240	245	267	217
TTGGGTTGCTACTATC	alt_5882_new	34	56	62	48	46	44	53	34	68	46
TAGCAACTCCCTAGAG	alt_5882_new	2	9	7	6	11	2	10	4	6	5
GGGGTTCGGGCACGTC	alt_5882_new	68	84	102	90	76	81	93	89	90	74
AACTCCTTCACCAATT	alt_5882_new	0	0	0	0	0	0	0	0	0	0
AAGCGATCCGGGGTTG	alt_5882_new	79	92	78	93	102	78	97	95	84	81
ATAAGCTTATCTGATC	alt_5882_new	18	22	26	20	27	31	28	29	22	16
TTCGACGGTTAAGCTC	alt_5882_new	6	5	3	4	4	5	4	5	6	5
CTAATTACCCGCTTAT	alt_5882_new	16	23	30	34	34	15	27	26	39	24
GTGGGTGTGCTCCACT	alt_5882_new	0	0	0	0	0	0	0	0	0	0
TGACTCTTTACGACCT	alt_5882_new	3	16	9	5	9	13	10	17	5	9
AATTCTTTGTTTATTT	alt_5882_new	152	78	201	194	97	155	94	150	80	138
TTATGCGAATTTACCC	ref_5882_new	25	23	25	21	19	16	20	13	18	11
ACAATTCCCACTTAAC	alt_5882_new	0	0	0	0	0	0	0	0	0	0
GTCCTATAGCCGTCAA	alt_5882_new	42	66	80	34	62	37	70	48	73	30
TCTAAAAAGTCTCTCC	alt_5882_new	0	0	0	0	0	0	0	0	0	0
ATATGTGCTCATACAG	alt_5882_new	7	19	10	16	19	10	11	13	24	12
ATAGCATTGGTTATTT	ref_2783_reverse	23	48	42	33	63	20	65	19	53	24
TTGTGTCATAAAGACC	ref_2783_reverse	10	20	11	10	28	11	19	3	28	5
CCGCATGGATACACTC	ref_2783_reverse	2	13	2	3	11	2	14	3	10	2
GGTTTCGGCGCATTCC	ref_2783_reverse	11	24	21	16	36	13	36	11	30	17
CTGATGACCTCAGTTT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTGCTTAACAGTC	ref_2783_reverse	7	5	1	3	8	3	12	1	8	2
GTGAGGAATCCCTATA	ref_2783_reverse	26	64	32	34	85	30	74	22	71	21
CTGAAGTCCTACAGTC	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCTAATTTCGGAT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGGGCCCTTGCGA	ref_2783_reverse	14	27	7	10	21	10	19	5	24	6
ACCAGGAGGTGGCAGG	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTCTAGTTCCCGT	ref_2783_reverse	6	20	7	7	29	10	21	5	19	7
CTTAGCGACTTAACGC	ref_2783_reverse	9	29	11	10	31	7	20	4	25	7
GACTCGCTACGGCCTC	ref_2783_reverse	26	63	23	24	46	16	67	24	66	15
CGTATCAGTCGATATA	ref_2783_reverse	5	21	9	2	9	3	12	3	12	6
TTTCGTTGTTCATATA	ref_2783_reverse	1	3	1	5	4	2	9	0	5	2
CATTCGGTTTTGGGCC	ref_2783_reverse	57	112	70	39	99	53	122	44	152	41
GCCTTAATCTGGAGCG	ref_2783_reverse	38	88	27	29	83	31	96	33	97	29
ATATAACTTTCGAGCT	ref_2783_reverse	4	5	6	7	6	5	14	7	11	8
TGATCAGCGAGGGCAT	ref_2783_reverse	17	32	19	10	29	22	37	10	26	16
CATTCTTTTCCCATAC	ref_2783_reverse	1	11	4	0	1	8	5	4	8	2
GCATATTTTTTGGTCG	ref_2783_reverse	5	12	12	3	17	4	8	2	18	3
TTTGCATATGGAGCTT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTGGGCTTGTTT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACATGGAGTTCA	ref_2783_reverse	4	17	7	4	22	3	9	4	13	3
ATTGTAGCACCCGCGT	ref_2783_reverse	11	15	8	11	27	12	23	6	14	10
AAACCGCCGCACCCGT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
ACTCATCTCGTGATGA	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
GCTCAAAATCGCTGCA	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
TTAACTCACTTATGCA	ref_2783_reverse	16	70	21	10	68	22	57	32	68	27
ATACTGGGGTATATCC	ref_2783_reverse	22	38	31	12	55	17	41	13	57	27
CTGGGAGTGATACATT	ref_2783_reverse	13	30	14	8	44	9	26	3	32	9
GCTTATTGGTGGGTAT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGGAAATGCATTC	ref_2783_reverse	5	6	9	4	15	3	5	5	14	3
CTTGTGTATATTTGCT	ref_2783_reverse	7	7	5	10	18	9	15	5	23	5
CCCGCGACTTGGGTCT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTAAGTGTCCCTG	ref_2783_reverse	1	5	3	0	3	1	1	2	6	0
GGGTGTCGCTCTATAG	ref_2783_reverse	6	13	6	3	11	4	10	7	8	4
GGTACCTCCTCTTCTG	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
GTAAAAAGTCTTTTGG	ref_2783_reverse	11	14	11	4	18	9	22	9	26	5
CGTATCAGTCGATATC	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCATTCCTCAGAG	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGATTAGGTAAGT	ref_2783_reverse	19	25	13	23	34	14	32	13	28	11
CTTTTTCTTACTTAAT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTTTATTTGCGAC	ref_2783_reverse	17	44	28	14	37	24	63	15	41	17
CGTTATACACTTTTTT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGAAACGGCTTCT	ref_2783_reverse	16	36	16	15	46	17	35	12	49	17
TAGTCTGCGAAGTTGT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGATTGTCTTTAG	ref_2783_reverse	0	4	0	1	11	1	9	1	8	1
GAGCAAGGCATGGTCT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CCACAAATCGTCCTAG	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTAGATTGATACT	ref_2783_reverse	4	3	3	2	3	4	2	1	3	1
GCCTCAATGACATCTG	ref_2783_reverse	13	44	16	23	49	11	42	15	44	8
CTCATGGTTCGTCATT	ref_2783_reverse	7	31	15	9	31	5	32	10	27	8
CATGCCGTAAGTGAAA	ref_2783_reverse	32	72	48	33	75	24	73	35	99	31
TCGGGGCTTCCGGACG	ref_2783_reverse	27	103	67	52	83	41	98	30	85	32
CGATACAGTAGCTCTT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
AATTGTTAAGAGACTA	ref_2783_reverse	9	32	27	14	16	13	32	15	26	16
CCGCGTTAAGTTACTT	ref_2783_reverse	86	199	80	72	206	85	194	70	227	56
TCCGCGAGCCTGAATC	ref_2783_reverse	6	6	5	3	13	3	4	2	11	2
TCATTTAGACACACAT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTTGCACTGGACG	ref_2783_reverse	11	20	17	10	20	7	24	9	16	14
AGCCGACAATCACATT	ref_2783_reverse	12	20	11	13	26	13	32	6	33	11
GCTTGCTCAATATGGT	ref_2783_reverse	19	40	27	9	23	11	34	15	32	21
GGGGTTCAAAATCATG	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGCATCTAGAACA	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGTAGCTTTTGCG	ref_2783_reverse	3	4	1	1	6	3	3	2	3	3
TGGTGCCTTCGGATGC	ref_2783_reverse	88	154	107	71	171	69	169	78	197	67
AACTTCGTAGGGACAT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGTTTCTCGGCCT	ref_2783_reverse	10	40	27	19	35	13	44	10	40	14
GTGAGGGTGTACGCTG	ref_2783_reverse	20	38	26	23	35	18	70	13	61	7
AAGGGTGTAGATCAAA	ref_2783_reverse	36	67	60	30	86	39	93	31	88	16
CATCATTGGGGCTTGA	ref_2783_reverse	20	37	16	17	57	19	53	19	53	19
TTCTCAAAACATTTTA	ref_2783_reverse	7	19	11	6	19	7	16	6	20	5
TTGTCTATTCACATCT	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGAGTTTAAAGTT	ref_2783_reverse	27	63	26	21	52	18	64	30	59	16
CCCTCCTCCTTTGGCG	ref_2783_reverse	0	0	0	0	0	0	0	0	0	0
ATACGATTCATAGTTC	ref_2783_reverse	1	4	5	1	4	0	5	3	7	3
GTACAGCGGCTGCTCA	ref_2783_reverse	7	12	7	3	13	7	18	3	8	6
AATTACGTAGCAACGA	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
AGCTAAAGTACTGGCT	ref_5486_RC	14	19	14	3	8	4	10	5	13	11
AGAGTCGGACCATCCA	ref_5486_RC	16	20	14	21	17	8	16	8	16	16
ATCGACGGAGCTACTC	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
CACCGGAACATTGCAG	ref_5486_RC	23	18	24	14	29	9	31	23	35	12
CATCTAATCTAAATTT	alt_5486_RC	111	113	131	113	95	96	112	118	109	101
CTATTCTCAATGGAAA	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
CCGTTATGGGGTTCTT	ref_5486_RC	9	13	14	12	13	8	17	9	23	23
AGCCATCGCGGTGCGC	ref_5486_RC	11	12	9	19	9	11	7	5	16	7
AAGTCCTTCTTTAACA	ref_5486_RC	77	72	101	61	75	69	82	57	96	77
GGACAAATGAAATTTC	ref_5486_RC	36	31	39	28	42	24	34	27	30	25
CTGATCGGTACCCCCC	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
GTTAAGCTAGTTCTTA	ref_5486_RC	6	57	12	6	62	10	57	7	63	4
GCAGCTGCTTGGTGTG	ref_5486_RC	9	17	21	14	16	18	37	8	19	4
GGGTTCGGTGAGATCA	ref_5486_RC	5	8	11	3	10	9	11	5	7	7
CCAGTCCTGCGACCAG	ref_5486_RC	8	7	9	2	5	4	11	3	4	2
CGCAGGGGCTGTATAT	ref_5486_RC	87	132	129	96	116	94	131	113	132	106
GCGTCACTCTTACAGG	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
GCGCTCTCCCATTATC	alt_5486_RC	34	54	33	41	58	37	48	25	56	28
GACTTGTTCGGATGTT	ref_5486_RC	3	3	5	1	0	1	3	1	4	0
TTACACTCATATTGCA	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
AATGATCAGCTTTCCG	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
TATTGCTCAGTCGCAG	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
GGAGGGCAACACGAAC	ref_5486_RC	2	2	6	7	2	5	7	5	5	2
GTTTGCCTTACTCCGA	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
TTTACACTGGTTGACA	ref_5486_RC	44	29	32	33	41	49	53	22	50	33
GTCTGGTCAGGCATTG	ref_5486_RC	18	25	34	24	27	25	17	12	27	10
CTCATCGAGCGTACTA	ref_5486_RC	70	68	80	66	84	72	95	69	110	53
AGGGCACTGGCAGAAC	ref_5486_RC	75	143	111	90	144	97	130	79	107	71
CTGAGTCTAAAGTACG	ref_5486_RC	22	33	27	22	25	19	23	35	40	10
TCGGGTTGACTTAGTT	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
TGCTGATGCCGACATT	ref_5486_RC	7	6	3	7	5	7	8	4	4	4
TAATCATTCTTACGCG	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
TTAGGTCTGACTGCTT	ref_5486_RC	7	9	9	5	12	12	19	4	17	17
CAACGTATGGTCAGGG	ref_5486_RC	45	62	55	53	65	44	74	50	71	48
ATCCACCGGGGGGCCG	ref_5486_RC	15	29	27	29	25	8	24	27	20	25
CGTCTACAGCTCCTGA	ref_5486_RC	29	36	26	33	45	27	54	17	42	19
AAATCCGGTAGGGTAT	ref_5486_RC	82	79	89	80	99	78	103	86	88	81
ACTCCATTTTTATCCC	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
ATTGATTTGCGGAGCA	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
CAAACATACCGGGAGG	ref_5486_RC	46	63	58	38	57	50	69	29	99	36
CTTACCTCCCCGACAA	ref_5486_RC	12	29	10	6	15	13	17	10	21	5
TGTTTGTTATTCTGCC	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
GGCGCGACTCAAACTA	ref_5486_RC	19	16	14	15	15	6	5	8	18	12
GCCCCTGTGTAACCTA	ref_5486_RC	9	4	13	10	11	8	9	8	7	10
GCGTGCAAGGGCTGGA	ref_5486_RC	0	0	0	0	0	0	0	0	0	0
TCATCTTCAGCGCCTT	alt_5181_fdr	15	12	18	18	6	17	7	11	15	12
AAGCGGGGTGGTGCTA	alt_5181_fdr	3	4	6	5	6	5	7	7	9	4
AGTCAATCAATCCATA	alt_5181_fdr	81	89	118	75	94	83	93	70	118	85
TTCAATATCTCCAATT	alt_5181_fdr	46	32	40	44	31	33	33	32	37	24
TAAAGCCTACCCTCAA	alt_5181_fdr	7	25	16	12	28	9	19	6	16	10
GGAGAATCACTCAACC	alt_5181_fdr	18	35	35	22	36	26	42	28	26	30
AAGTCCCTGATAATCC	alt_5181_fdr	843	731	990	814	740	816	781	780	767	666
GTGGCCCCCTGTTTGA	alt_5181_fdr	640	599	786	627	603	675	675	629	691	642
TATCTGGCCCTCTCTT	alt_5181_fdr	25	20	31	22	28	19	23	20	29	21
TCGGCTGGTAAGTTTG	alt_5181_fdr	6	8	11	7	6	4	8	12	7	9
GAGGCCCCCTGTTTGA	alt_5181_fdr	0	1	0	0	0	0	0	0	0	0
CGATTCCCTTTGAGAT	alt_5181_fdr	36	29	52	47	38	36	34	47	40	24
AATCTGTTATCCCTGT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCACCCTGTTTGA	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCCCTGTTAATCC	alt_5181_fdr	1	0	2	0	0	0	1	0	0	1
AAGACCCTGATAATCC	alt_5181_fdr	0	0	0	0	0	1	2	1	1	0
CAGGGGGCATGTACAT	alt_5181_fdr	4	7	8	5	12	4	10	7	4	2
TTCATTAAGTTGCGCG	alt_5181_fdr	22	18	18	18	17	12	17	8	10	14
GGTTCCGACAGTAGAA	alt_5181_fdr	33	38	37	46	33	46	36	40	31	27
TGTTCAGCTTTATCTA	alt_5181_fdr	46	75	53	45	58	40	55	63	63	37
GGGGAAGGTTCAATCG	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGTTTATGGGTGC	alt_5181_fdr	13	17	20	16	12	18	23	15	20	15
AATGGCGATTCCGGTA	alt_5181_fdr	73	38	85	56	28	57	36	54	48	53
TCCTGACGGGGATTCC	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
CGCACATGTGTGAGTG	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
GTGCACGTGTAATCAC	alt_5181_fdr	29	23	23	20	27	28	30	21	29	18
GGGCTCAGCATTCGTA	alt_5181_fdr	5	2	4	4	5	0	2	1	2	3
TCCTATACTAAGTCGC	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGTATGTGTTAAATAC	alt_5181_fdr	23	24	29	23	32	12	18	19	26	22
ATATTTTGTTCGACCT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
ATGCACTGGCTAACCT	alt_5181_fdr	30	26	26	19	25	31	23	21	29	21
GCGGACTCGACACATA	alt_5181_fdr	72	92	107	86	72	70	74	87	92	84
TGTATTAAAAAGAGTT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
AATGGGATCGTGTGTG	alt_5181_fdr	13	14	19	13	22	9	19	7	14	13
GTGAACCTCTCTGAGT	alt_5181_fdr	39	53	48	52	37	50	64	44	62	41
CGCTGGCGTGGGTTTA	alt_5181_fdr	16	17	29	18	19	20	26	16	26	20
TTGATGCCTCTAGGAT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCTAGCGTTCGGC	alt_5181_fdr	25	27	38	33	24	30	21	32	34	29
AGTAGAGTTTTACCGG	alt_5181_fdr	99	103	126	124	109	96	87	93	102	88
CTTCGTCCTAAAGTGA	alt_5181_fdr	77	68	100	67	73	69	69	80	61	62
GATCTCGGTACGTTGG	alt_5181_fdr	48	50	64	58	57	58	33	38	42	48
ATTCGCTGCGTACCAT	alt_5181_fdr	16	12	9	9	7	9	7	9	12	7
CGGGACGAATGGTACT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGGTGTTCAGATT	alt_5181_fdr	21	10	19	13	11	15	20	16	23	10
ACTATATCTCATAAGC	alt_5181_fdr	7	11	2	4	10	11	7	10	13	8
CTCGTACTGGTCGCGT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
ACGCCGGCACGGATAT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTGCACGGATAT	alt_5181_fdr	55	56	96	72	49	61	76	46	78	70
GTCGGCAGGGCTTTCA	alt_5181_fdr	101	88	131	110	138	94	108	101	128	96
TAGGGCCGTATCCTGC	alt_5181_fdr	201	146	202	188	171	172	158	170	187	175
TTACGTTATACTCTTA	alt_5181_fdr	2	8	7	6	9	5	6	7	4	6
TATATTAGCCAATTTT	alt_5181_fdr	1	0	1	1	0	2	3	0	0	1
AGGATACCATCGTTTG	alt_5181_fdr	0	1	6	4	2	6	2	4	2	2
CTTCGCCGTCCGAGCT	alt_5181_fdr	5	30	7	13	22	13	21	7	15	5
GTGCTTACATGGGTGT	alt_5181_fdr	262	376	328	274	361	279	364	257	374	262
GGCTGGTCCCAGTGGA	alt_5181_fdr	18	24	30	24	18	22	20	23	16	18
GTTGTGTGCCTTTATT	alt_5181_fdr	26	32	46	30	33	26	30	26	41	36
TACTCAGGCCTGCTAC	alt_5181_fdr	40	37	48	39	35	26	52	39	53	28
TCTTGAGTCTCCTCTC	alt_5181_fdr	27	38	47	33	27	31	30	31	31	37
TAAAATATCATTGTGT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
GGTTAGGTCCTAAGGA	alt_5181_fdr	76	99	92	96	68	70	82	83	75	62
CTTCTAGCTAGGGCGC	alt_5181_fdr	135	126	132	104	112	110	128	100	131	124
CATTCATATAGGAAAC	alt_5181_fdr	17	17	23	11	11	19	12	14	7	14
CCGTTTTTACTATGGG	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
AACGTGCTTCCTAATT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTATCTGCCGTGA	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTGTATACTTCTA	alt_5181_fdr	50	30	52	52	43	41	35	46	38	38
TATGTACCTTTACGGT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
GGGACGGGTTGTCCTG	alt_5181_fdr	26	15	20	21	18	23	26	21	11	28
CTCCAGTGTTGTGGTT	alt_5181_fdr	63	65	71	74	61	71	58	42	82	63
ACTCCTAGATTTACGC	alt_5181_fdr	3	3	0	2	3	4	2	4	3	4
ATCATCTGCATGTTGC	alt_5181_fdr	9	20	20	16	20	12	15	18	18	6
GCTGCAAGTCGTTATG	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
TATATATGGCAGCCGC	alt_5181_fdr	27	23	40	41	41	20	37	24	37	27
CTGCTTAAGTGTATAC	alt_5181_fdr	33	28	28	33	35	25	35	22	42	25
ATTATTCCTGGTGGGC	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
TGACACAGGGATATGG	alt_5181_fdr	259	272	353	257	252	249	236	241	269	230
TGGCGTTGGCCACTAA	alt_5181_fdr	19	13	22	22	9	20	17	15	14	13
AGAGTCAACGTTCATG	alt_5181_fdr	26	18	49	16	21	25	39	28	29	33
GTGCGAGGGCGGGCTA	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTCCCATGCGGTT	alt_5181_fdr	15	6	17	11	18	11	15	7	10	14
TGGGTATGGCTCCGTT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
TATCAGCGGCGAGTTG	alt_5181_fdr	30	47	52	39	42	41	49	44	54	38
TAGAAGTAGTCGTATT	alt_5181_fdr	14	9	13	17	10	8	15	22	13	13
TGCTGTTGGGTGGTTG	alt_5181_fdr	36	45	45	49	41	33	42	40	24	36
AGGGTATGTAGATTCG	alt_5181_fdr	22	26	44	37	30	38	27	25	28	27
TAAGCGCATTCATGCC	alt_5181_fdr	19	22	28	24	12	26	25	21	19	14
AACGGACGGTTTCCCG	alt_5181_fdr	20	10	12	14	13	6	14	16	8	7
CGCAGCCGGACATGCG	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCCGCGCGCACTC	alt_5181_fdr	21	21	40	16	26	22	21	30	12	21
CAGAATACCTCTGCTT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
CACGAATTGATAATGA	alt_5181_fdr	14	7	25	9	12	14	11	9	12	8
AGCTAGGTGCAACCCT	alt_5181_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAGCTTTCTGTCG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCCTTAGCCGCCC	ref_5261_upstream	20	29	22	21	23	26	25	28	28	17
TTCGCTGTCGTTGGAA	ref_5261_upstream	70	77	67	46	74	36	62	57	72	41
TGGAGCGACACGCGCT	ref_5261_upstream	23	35	36	41	38	30	33	32	43	29
TCGCTCATGGGTCTCG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCGTTAACACTCC	ref_5261_upstream	9	14	8	2	16	6	14	7	11	4
TATATCATCGACCGTG	ref_5261_upstream	5	17	5	8	25	5	17	5	12	11
TCTTGTTGTTTGAGCT	ref_5261_upstream	33	30	29	30	26	16	25	30	30	12
TTAGGACTTGTGTTGG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGCAGGACGGCGG	ref_5261_upstream	11	7	12	12	14	11	9	13	7	10
GCATTTACTCTGCGGA	ref_5261_upstream	7	5	10	4	8	3	21	8	11	3
TTCCGGTTTGAAAGCC	ref_5261_upstream	21	10	14	16	10	13	34	7	16	15
TAGGCGTCGTCGTTAC	ref_5261_upstream	13	14	17	17	11	7	16	8	16	8
CGGGTTGGATTGATGT	ref_5261_upstream	26	27	24	19	28	13	23	13	26	10
GAAATTTTCGGCGGAT	ref_5261_upstream	32	37	41	40	37	51	33	33	47	35
TTCCCCGGCTTAGGAC	ref_5261_upstream	98	127	98	97	158	97	161	93	152	78
AATTTTGAGAATAAGT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTCTACCGCCGCCTTG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTAGCTTGCCCCA	ref_5261_upstream	12	12	18	13	20	18	13	8	12	14
TCTGGTTTGGTACGGA	ref_5261_upstream	65	63	74	47	74	53	64	66	66	51
GGGTTATTCGGTATCA	ref_5261_upstream	5	2	1	2	1	0	2	1	2	1
GTTGAGTTTGGCTCGA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCACTTTACTCG	ref_5261_upstream	27	36	33	25	44	11	41	23	23	19
AGCGGAGCTGAGGTCT	ref_5261_upstream	194	191	191	177	164	195	204	133	237	156
TATGGATGCTTCGGGC	ref_5261_upstream	49	94	86	69	85	80	85	76	102	68
CCTGTCGTGCGTTCCA	ref_5261_upstream	13	32	13	18	26	13	18	19	22	15
TCAATCATAGTTCTGA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTAGATGCCAAGACGG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGCTATGTAGTAACTA	ref_5261_upstream	7	7	9	9	8	11	7	9	10	6
CTATTCACTCAGGACA	ref_5261_upstream	11	15	22	15	18	12	16	17	21	16
CGGGTTCGGTCCGTGA	ref_5261_upstream	141	109	124	144	106	97	138	99	107	110
TGTTCTGTGCGACATG	ref_5261_upstream	12	13	13	12	14	9	15	12	11	6
TCACTCGACTTTTTTC	ref_5261_upstream	0	0	3	3	4	3	6	4	15	4
CGAGCCCTAAGCCTCT	ref_5261_upstream	146	125	151	135	129	144	125	130	160	125
TTTGCACACTCTGTCC	ref_5261_upstream	1	24	1	0	22	1	26	1	34	1
GCTCACCCATGGGCGG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTAACTGTATTCTGAC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGACTGCATTAGAGTC	ref_5261_upstream	5	1	5	4	6	3	1	3	5	2
GATGCCCTCGCTTACT	ref_5261_upstream	1	2	6	1	5	5	5	3	1	1
AACACCACGTTGAACT	ref_5261_upstream	41	21	48	50	26	43	21	33	29	30
GATATGCTGAATACGC	ref_5261_upstream	5	5	2	4	6	4	4	5	6	5
CAATTAAGTAGCCATT	alt_5261_upstream	33	43	67	60	56	34	65	47	51	48
GTGATCCATCTCTTCG	ref_5261_upstream	19	23	17	18	25	21	26	17	29	18
GAAGCACAAACGTCGG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTACAGCACGTG	ref_5261_upstream	20	24	22	22	23	23	20	14	22	21
TTCGTTGTTTGGAGCA	ref_5261_upstream	40	34	37	46	27	25	26	24	32	32
CTGTTAATCCGGTCAA	ref_5261_upstream	2	3	7	2	5	6	11	3	2	1
AGGGCTGTCCGCTTTC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCCTTTGGCTGGT	ref_5261_upstream	32	40	41	24	40	23	28	41	47	20
GGTGACTCAAAGTCTG	ref_5261_upstream	53	56	54	46	62	51	44	46	69	37
ACGTTCGCTCGGTTGT	ref_5261_upstream	2	6	2	6	3	6	4	2	5	2
CGAAGCTTCATTATGT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCGTTTTCACATC	ref_5261_upstream	19	22	34	21	23	21	26	26	36	15
GGATTCACCTTACGAC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CATTTGAAGGGCCATA	ref_5261_upstream	7	12	18	15	8	11	16	9	16	14
AGTTTCCAATCCGAAT	ref_5261_upstream	72	58	53	47	60	41	55	36	67	42
GCTCCTTAGGTTCTGT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
AGACTCTTTCGTCACG	ref_5261_upstream	25	32	42	28	32	32	28	32	28	29
AAGGGCGGTCTACCCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGGTTGAGTTCTT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTCTGTTGATGGG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTTATTCGCCACG	ref_5261_upstream	12	14	15	12	17	13	19	8	15	13
TTTAATTGGGTCTGTC	ref_5261_upstream	20	14	15	14	10	11	14	11	12	5
TATTTGAATCGCCACG	ref_5261_upstream	12	23	33	20	18	15	20	30	17	18
GATGCCCCATACTGGC	ref_5261_upstream	25	16	27	25	23	11	30	32	24	19
CAATGGACTAACCCCG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTATGGGGCACAG	ref_5261_upstream	40	41	53	29	34	36	53	37	58	45
GTTCACGACACCTCCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTGGGCTCGATCGCTA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCACTGTGTTAGT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGAGAAGCTGGGAATA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTATGATGGTATACCT	ref_5261_upstream	26	30	21	29	33	21	41	26	43	20
TCCGTTCTCAGGCAAG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGTACCCTACGCC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTATACTGAGGTGATT	ref_5261_upstream	113	162	143	147	159	105	188	158	199	128
GCTTTTAAACCATCAC	ref_5261_upstream	18	22	30	19	31	24	34	12	24	27
TTGCTCTGGTATTATG	ref_5261_upstream	35	44	35	28	38	22	32	39	29	34
CAGGGTCACACACCTC	ref_5261_upstream	4	6	4	2	6	9	6	7	8	9
ATCATCATCCCGGGCT	ref_5261_upstream	10	10	5	10	10	7	16	7	10	13
TGGCGTCTTCTGTCCA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGCTGCATCATAA	ref_5261_upstream	18	15	10	15	13	13	14	12	11	14
ACATTGCTCTTGGGAC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CATAGGTTCGATGGTT	ref_5261_upstream	11	25	20	6	29	13	21	12	22	21
GTCTTTCATCGTCTTT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTCTGAGACTTA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATTCATGTGTAATTAC	ref_5261_upstream	2	4	5	4	6	3	6	2	2	5
GTTATCATTCCGGAAA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATACTAACTGCTCTCA	ref_5261_upstream	56	62	73	63	53	49	51	57	59	55
GATCGTGTTTTAATAC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
AAGATACTCTCTACCA	ref_5261_upstream	1	0	0	0	2	0	0	1	0	0
CGGTCGCGCGTGGACC	alt_5261_upstream	1	2	2	1	1	0	0	1	1	0
ATTAGCATGGTGGTGT	ref_5261_upstream	8	7	8	8	12	12	11	7	12	16
TGGTAAATGGTGGCAT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GAGGACGACTCCTAGG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CCCCTCGCCAGTGGGG	ref_5261_upstream	2	7	2	7	6	6	1	6	9	4
CCCTATCATGGTTCCC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
AGCATCTCCTGCTACC	ref_5261_upstream	20	33	22	27	27	16	25	24	27	27
AACCCTACTACCATAG	ref_5261_upstream	16	12	18	14	16	14	5	9	13	12
TTCTCAGATCCCTCGC	ref_5261_upstream	1	4	5	7	4	5	7	0	2	3
ATGTGCTCCTTCCCGC	ref_5261_upstream	4	4	7	8	6	6	13	4	6	6
TCCCGCAATTACGGTG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
AAACATCTCCCGTGCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGTTTCGATAATA	ref_5261_upstream	3	2	2	4	6	7	5	8	4	6
GGACACTTTCTTAGCA	ref_5261_upstream	4	4	4	6	5	1	2	4	5	1
TTTCTCTGTAGCGTCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGATAGCTAACAGATA	alt_5261_upstream	288	261	347	295	259	232	258	264	288	248
GGTATCTGATTTTTTT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTTTCAACTGCCT	alt_5261_upstream	5	8	3	3	1	3	3	2	9	4
AATGCTACGGCTTTTT	ref_5261_upstream	2	2	9	6	6	4	8	5	5	4
CGGAGTTCCATGTAGC	ref_5261_upstream	89	77	96	81	81	74	103	77	83	72
GTGCTATTTACAAGCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CATGTGGCTTACAAAG	ref_5261_upstream	179	210	233	172	206	184	226	180	228	191
CGCCCCCTTCACATTT	ref_5261_upstream	34	37	43	28	47	33	58	26	56	26
TGAACAGGTCCTTTAT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTTGAGAGGTCAAGTC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTCGTCCTTCTAG	ref_5261_upstream	16	39	17	19	47	6	50	10	38	15
CTTCCTCAGCTATATT	ref_5261_upstream	42	35	24	34	33	21	52	24	40	26
GGTCCGTTCCTGAGGG	ref_5261_upstream	30	52	39	44	58	52	58	35	60	33
GGCCTTTTTTGGCAGA	ref_5261_upstream	44	27	33	35	35	20	32	40	31	24
TGTCCACTTTCATCCG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGACGGCCACTGTTTC	alt_5261_upstream	11	31	12	13	23	4	25	8	26	7
AGGGGTAGAGGATTCG	ref_5261_upstream	24	33	42	42	37	26	46	27	42	35
TTGATATTTTCTTATG	ref_5261_upstream	30	41	47	41	38	43	43	30	38	38
CCCTGTGATGGAACCT	ref_5261_upstream	7	7	8	15	8	8	10	5	10	4
GTATAGGGGAATTTCG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTTATGTATTGTG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTAATCACCCTTGCGA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGTCATCTTTCTC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCCATATCTACCGCTT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ACGATGACATTTTAAT	ref_5261_upstream	81	63	64	58	61	53	57	80	65	50
GTTCTAACTGCTGGGT	ref_5261_upstream	5	8	8	8	6	12	9	9	15	5
GTCGCGATTTTCGCTG	ref_5261_upstream	10	10	17	11	8	5	13	16	16	11
TAAATCTCGGGGTAGC	ref_5261_upstream	61	59	77	60	69	69	57	75	69	59
TTTAAAGTCCTGTGAA	ref_5261_upstream	17	29	25	27	22	30	32	22	24	16
TACTCGTGTGCGGTAT	ref_5261_upstream	5	2	4	1	2	3	3	2	6	2
TACCATGTTTGCATTT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TAACACCTGAAGTCGA	ref_5261_upstream	1	2	4	1	9	2	2	3	9	5
ATGGATTACATGAGAA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGTAGCCATTGTT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGATTCTAAAGGCATG	ref_5261_upstream	21	34	37	31	35	21	32	11	41	20
AAATTACTTCTCTCTA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCATGGTCCATCA	ref_5261_upstream	17	16	12	17	8	12	19	8	28	11
GTTTGTACCATAATGG	ref_5261_upstream	103	89	143	102	80	85	80	90	91	82
CTTGTGTATTTCTCCG	ref_5261_upstream	3	2	1	2	2	3	6	2	7	5
ACCCTTTGCCAAAATT	ref_5261_upstream	33	42	33	26	37	29	50	28	33	27
AATACAAAATCGTGAA	ref_5261_upstream	42	54	63	35	40	41	34	50	43	35
TTCGTTTAAGATGAAG	ref_5261_upstream	10	7	10	2	4	8	7	8	10	11
CAGTAAAAAGGTCTCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GATGGAGAGTTTAGTT	ref_5261_upstream	6	4	6	6	1	4	4	5	10	6
GCGACAATCACTCTCA	ref_5261_upstream	13	15	26	23	25	16	28	19	23	18
CTGTGCTTACTCTGGC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGGGAACCCGGTG	ref_5261_upstream	14	9	14	14	10	14	16	9	17	11
ATTCGTGCTTTAGACG	ref_5261_upstream	6	3	4	0	3	3	7	3	2	0
ATGAGAGGGTCGACGC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GAGGCCCCATAGTTTG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTAATATTCTTCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CAGCAAAGTTACTCCA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGCTTATACCGTT	ref_5261_upstream	21	26	40	33	32	23	36	28	39	19
TGCAAAAGAGTTGTTA	ref_5261_upstream	17	18	17	9	18	14	29	20	22	17
ACCGCCCTTCGTCCGT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGCTCTATATTTC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATACATTATATCCGGA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
AGAGTGATTCAATATG	ref_5261_upstream	12	18	19	16	21	17	13	15	22	14
TGGTCTCAGAGCCCAC	ref_5261_upstream	7	11	17	15	11	11	16	12	8	10
ATTCCCGTATTTCCTA	ref_5261_upstream	14	16	25	10	12	21	20	17	9	14
TTTCGATCAGGCTATG	ref_5261_upstream	37	54	55	41	50	31	58	41	40	30
TTCATCTATGTTCGGG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCTTAATTCTATT	ref_5261_upstream	14	26	16	24	26	15	23	20	23	24
GACCGGCACTCAGACG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCGTTGATCTCCC	ref_5261_upstream	13	9	15	21	11	17	9	15	24	9
TGAACCTAGTCTGCTG	alt_5261_upstream	78	83	92	82	79	71	79	72	103	83
GTGCACCCCGGTAGCG	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCATCTCGTAAAT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGATAATTACATG	ref_5261_upstream	16	47	43	37	40	35	25	26	45	26
AATGACACTTTTAAAT	ref_5261_upstream	3	1	4	0	7	1	2	6	2	2
TGAGTGCGATCTTTAA	ref_5261_upstream	23	31	37	31	22	42	23	39	39	16
GACCGTTTTTATGATT	ref_5261_upstream	29	32	40	38	29	21	33	23	20	27
GATTGAGCTACGCCTG	ref_5261_upstream	26	37	27	21	25	26	24	22	27	23
GTATTATTGGACATCA	ref_5261_upstream	20	20	11	16	18	21	26	22	18	17
CCCATCACGTTCGGCA	ref_5261_upstream	8	3	8	7	11	6	8	6	7	5
GGTGTATGATGCTCTC	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGCAAGGCGTTTA	ref_5261_upstream	61	43	50	35	44	50	49	41	54	43
TTACAATCTACTCAGC	ref_5261_upstream	15	20	20	11	14	9	12	13	19	14
TTGTTCTTACGTTAGG	ref_5261_upstream	23	36	32	24	48	30	37	25	40	17
CTTTACCCGTACGGAA	ref_5261_upstream	9	12	17	7	8	12	12	9	7	7
CATTTTTGGCGCAGCA	ref_5261_upstream	13	16	20	11	12	12	14	10	10	10
CACTGATTCCTGAATA	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
GACAGTGGATCGTCCT	ref_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTACATTGATTTG	ref_5261_upstream	27	47	26	23	48	33	35	32	43	27
GGGGCTCGGATTTCAG	alt_854_reverse	12	15	7	11	12	14	15	7	16	14
GATCATCTCTCAGTGT	alt_854_reverse	11	11	10	15	22	7	16	8	22	11
GATCTGAGTTCGAGTC	alt_854_reverse	23	26	24	24	32	21	26	19	40	15
TTTTCGTATTTCTCCA	alt_854_reverse	103	106	106	83	104	79	105	79	110	86
TTGAAAGTCCACACTT	alt_854_reverse	10	23	15	9	25	8	18	9	45	4
GCTCACCACTGCCAGA	alt_854_reverse	0	6	6	2	9	2	7	5	7	4
AGGTTCTTTAATGTGG	alt_854_reverse	28	68	44	18	58	31	65	18	62	37
GACAGCGTCATTCCTG	alt_854_reverse	13	43	17	14	28	13	40	10	38	14
CAAAGTCTCTGCCTTG	alt_854_reverse	2	4	0	2	7	6	3	1	7	0
GCTCTATCTCGCTGTG	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
AGGATGTGTGTTGTAG	alt_854_reverse	14	28	8	20	28	8	24	14	27	11
ATTTTTTGTTGTTGGC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGCCGGCAATGCA	alt_854_reverse	170	273	198	143	311	185	316	166	297	160
AAGCGGGTTTCCATAC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
CTACCCAGTCGCACCG	alt_854_reverse	8	10	12	7	15	13	24	18	20	9
GTTGGTATCGTCACTG	alt_854_reverse	12	25	19	9	23	11	21	25	31	13
CTCTTAAGACTTGATC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTATCCCAGTCCA	alt_854_reverse	2	7	1	3	4	3	9	5	5	3
TTTGGACAGTAGACTG	alt_854_reverse	5	12	7	6	6	5	9	3	10	3
CTTTTAAAAGATGCTT	alt_854_reverse	29	49	41	21	38	26	49	19	55	23
AGTGTTTCTTCAGTCC	alt_854_reverse	19	37	22	16	31	8	47	15	31	10
CGTTATTAACGTGCGT	alt_854_reverse	14	14	15	15	12	9	14	4	14	11
TGCACTGTCTGACCAC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
GCAGAAGACATAACTA	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTATCATGGTACA	alt_854_reverse	67	106	70	58	92	55	114	53	100	41
TAGTGTCTCGGTTATA	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGTTTGTTCCTCT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGCTTGGGGAGCT	alt_854_reverse	0	0	0	0	0	0	1	0	0	0
CTCCGGTTTTCCAAAC	alt_854_reverse	8	14	8	8	12	4	16	7	13	9
CGAAACGACGAGGCCT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
CGCTCGCCTTTTCTTT	alt_854_reverse	32	55	47	29	66	26	63	42	62	36
ACTTATAACTCTTGCA	alt_854_reverse	12	7	14	6	7	11	14	5	26	9
GGCACTTATCAACGTT	alt_854_reverse	29	59	25	20	66	28	48	26	55	17
TCTTAACTCACACCGT	alt_854_reverse	16	42	21	25	63	30	49	36	45	27
CTTGAGGAGTCACAGA	alt_854_reverse	38	69	44	41	59	41	83	53	63	38
GCTTACTAGGTCAGTT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTGTCCGTAGCCT	alt_854_reverse	4	11	10	6	17	10	12	7	15	6
GGACGCAGCGTTGCGA	alt_854_reverse	43	54	49	42	75	44	71	54	78	42
ATTTAAATTGTGCCGC	alt_854_reverse	4	10	6	3	11	11	16	4	8	5
GATTCCTAGCCACTTA	alt_854_reverse	39	75	41	40	82	44	76	49	67	41
ACATTACAGTGGATTA	alt_854_reverse	76	94	87	45	104	55	113	66	119	58
CGTCTGTTTGGATTTA	alt_854_reverse	49	72	47	39	61	33	102	30	72	32
GGTGCTCACTTGATGA	alt_854_reverse	10	16	16	17	19	15	16	15	28	10
CTGGCATGTCCGCTTT	alt_854_reverse	17	36	24	19	42	21	47	21	48	10
TTATGTTACCACCTTT	alt_854_reverse	2	7	4	4	8	5	7	4	12	2
CCACTTTTCTTTCCAC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
CTTACTGACTGTTCTG	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
AGTGAAACTCTCTGCC	alt_854_reverse	21	13	38	18	34	19	29	20	41	14
TCCTGATGGTGTTTGC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
CCTGCGCTGTAGTTGC	alt_854_reverse	1	9	1	3	4	3	7	4	7	4
AATCATTTTACGATCT	alt_854_reverse	19	24	14	18	19	15	21	12	19	8
ATGCGAGGCCGGTTCC	alt_854_reverse	44	37	38	35	45	40	38	26	48	25
CCAAGTTATCTTTATG	alt_854_reverse	8	16	27	16	32	14	33	13	20	13
GTCATCGCTCAATCAT	alt_854_reverse	96	151	108	82	184	76	174	86	173	83
GTTATCACGCTTCTGG	alt_854_reverse	28	50	50	27	55	20	61	24	49	30
AAAACTTGCGTGGAGG	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGGGTGGCCGAGT	alt_854_reverse	29	12	29	26	20	23	30	8	24	17
TAATGGATCATAATGT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGCCACTGAGTAA	alt_854_reverse	8	16	12	6	22	8	14	9	15	11
AGTTTGCTCGCCTCGC	alt_854_reverse	10	25	10	11	17	9	22	3	21	14
GTGCAGATCGTCTGAT	alt_854_reverse	59	58	60	41	83	61	94	36	79	52
TTCTGCCAAATGTTGC	alt_854_reverse	8	28	13	9	28	19	22	10	19	8
GTTTTGCGCCATCGTT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGCACTGTGCGGT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCCGATGCCCTCC	alt_854_reverse	25	42	15	20	24	18	34	15	38	9
GAGGTCATCGGTGCAG	alt_854_reverse	2	4	6	3	7	3	4	2	5	6
CCGCAGACCTCATGTC	alt_854_reverse	100	262	127	124	253	126	215	106	240	123
TTGTATCCGGACGTTA	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTGCACAGACATC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
ACGTACCATCGTCCGC	alt_854_reverse	7	22	9	10	23	4	13	3	17	10
TACTACCTTTGATCCA	alt_854_reverse	19	47	29	18	59	33	63	25	49	18
GCATCGCAGATGAGAT	alt_854_reverse	16	23	19	15	22	13	31	11	23	9
TTGTAATCTCCCATTA	alt_854_reverse	32	74	57	30	62	35	79	34	55	20
AGGCTCAGGGGCACCT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTGTCCCGGTCG	alt_854_reverse	34	62	34	37	64	39	47	39	45	28
GAGGCAATCATAGGGG	alt_854_reverse	10	15	9	10	16	8	16	6	9	5
ATTTTTTATCGGTGAA	alt_854_reverse	8	19	11	5	7	11	18	6	14	4
ATACTTCGTCGGGAAT	alt_854_reverse	18	27	11	18	28	13	19	12	16	5
GTTTCTACCTACTCCT	alt_854_reverse	12	43	9	6	38	10	40	10	42	8
GATATTTTTCGGGGTC	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TTACTGTATGCATTTT	alt_854_reverse	19	27	19	23	26	6	40	19	33	16
TATCCCCACGCACGCC	alt_854_reverse	20	36	16	16	28	16	37	15	31	21
CGTGTTAGGGCGAGTC	alt_854_reverse	27	46	48	16	57	29	61	32	65	21
GACCTCCCATTCTGAG	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCAGGCTTGCTTG	alt_854_reverse	4	5	8	6	5	5	4	2	4	8
CACTTTTGTAGGTGAT	alt_854_reverse	15	20	12	14	21	10	17	13	26	16
AACGAGCAGCATCTTG	alt_854_reverse	78	111	113	73	124	73	129	84	113	60
TAAATCACTCACGGAA	alt_854_reverse	4	18	8	11	9	6	10	10	7	9
CATGATGAGCAGGGTT	alt_854_reverse	17	8	6	8	18	10	15	4	17	6
TCTTACTACGTCGTTG	alt_854_reverse	12	19	11	21	17	14	11	8	18	5
GGCGGACGTGGCGCCT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTTATAATTAGTT	alt_854_reverse	39	42	35	30	56	28	44	30	48	29
CTTCAAGGGCTTTCAT	alt_854_reverse	25	53	27	30	49	35	41	35	55	23
GATCTCACAATTTTTA	alt_854_reverse	20	37	33	28	36	26	49	19	50	15
GTTTCATACTTAACGT	alt_854_reverse	12	6	11	8	17	10	14	13	11	10
CTATGGTGTGACCCAG	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCATTCCCGGCAT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTCATCGGTGCTG	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTACCTGTTCGAG	alt_854_reverse	9	16	5	10	34	11	24	10	14	4
TTATCGACATAACGTT	alt_854_reverse	23	40	33	28	39	17	18	28	29	9
GTTGCTAAGCGCCTCC	alt_854_reverse	17	34	32	23	42	11	34	21	30	10
CGTTGGGAACTGACTG	alt_854_reverse	10	14	18	9	22	8	10	15	30	7
CTATTAGCTTTTTGGG	alt_854_reverse	55	99	70	60	93	62	100	56	82	56
GAGATTAGACACATGG	alt_854_reverse	37	38	44	40	61	46	70	31	67	36
TTTTACCGGGTTTCGG	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCTTTTACGGTCC	alt_854_reverse	17	8	12	8	9	9	11	6	16	7
AAGGTTTGGCTCGGAA	alt_854_reverse	3	6	4	3	3	0	2	2	2	2
ATAAGTAATCGGGTCT	alt_854_reverse	14	24	19	8	11	11	23	17	31	13
CTCAAAGTTCATATTA	alt_854_reverse	16	24	13	19	30	19	33	11	20	20
AGTAGTAATATGTTAG	alt_854_reverse	33	56	52	35	62	38	61	32	49	39
GTTGTTGGGGTTGTTT	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
AATATAAGTCCGCGCA	alt_854_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTGTCCTGCGAGT	ref_867_negative	5	9	5	1	5	7	9	2	13	2
CAGGCACGTCTCTGTT	ref_867_negative	16	30	22	14	24	26	33	24	30	17
TGGATTGTCCTCAAGG	ref_867_negative	57	73	71	56	77	38	65	59	85	53
GGTGAGGTAAAAAGAT	ref_867_negative	52	55	59	47	67	61	64	40	56	45
GTGTTATGGCGCGTTG	ref_867_negative	15	21	20	24	20	15	31	13	34	16
TACCAGTTTTAGTGTA	ref_867_negative	13	9	22	22	21	11	14	19	20	9
TGTATCGGGTCGTAGG	ref_867_negative	9	15	19	16	20	9	17	12	22	7
CACTCTTTCAGTGTCG	ref_867_negative	3	2	3	2	6	3	4	2	2	0
TAATCGTTATATGTTT	ref_867_negative	2	2	2	7	4	8	4	3	7	3
CGTTATACTCCTACGG	ref_867_negative	23	16	34	16	30	16	13	14	19	15
CCCATGGTATTTTTCT	ref_867_negative	72	74	78	51	67	58	75	76	64	57
AGAGTATATGCTGGCA	ref_867_negative	44	35	53	33	33	37	42	27	34	31
ATGACGGGCTATTATT	ref_867_negative	4	4	3	1	3	8	6	2	6	4
TAATTTGTCTCCTAAG	ref_867_negative	83	132	94	82	113	83	129	99	124	92
GATTGGAGGTCTTGTC	ref_867_negative	5	12	2	11	4	12	14	5	14	8
ACGGTTTTCGGTGCCG	ref_867_negative	2	10	5	5	14	7	4	1	8	2
GAGTGTTTTTTGCACA	ref_867_negative	23	39	30	17	54	22	43	24	47	18
GAATATTCCGGCGATC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
CCATAACGGGGAGTCC	ref_867_negative	4	15	11	15	4	6	14	8	9	7
CCTTTCGCAGTTTACT	ref_867_negative	11	18	8	4	13	14	21	13	9	5
TGCCGTGGCTTTTTTT	ref_867_negative	7	5	6	5	6	3	1	5	7	8
TCAGGTTTATCGACAT	ref_867_negative	0	3	6	1	3	0	3	1	4	1
CACACAAACAGTATCC	ref_867_negative	3	5	8	11	6	9	11	7	20	10
TCGCTTTTAATTTTAC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
AGTCGGGTGCATGCTG	ref_867_negative	13	20	10	12	15	20	17	21	13	9
TCTCTGGACTGTTGAA	ref_867_negative	3	13	12	19	8	12	14	10	9	4
ATAATAGCTTTGCCCG	ref_867_negative	35	49	58	52	51	30	70	41	72	48
CACTGGGCTTATAAGC	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CTTTGTGTCTAAAATC	ref_867_negative	11	10	10	15	11	7	11	7	7	6
CGTGGCGGGGTTTGGT	ref_867_negative	4	9	7	2	9	1	7	3	8	5
CGTATTGACGTGTAGG	ref_867_negative	7	8	5	6	8	10	9	2	12	5
ATTAAGCTAGATTACG	ref_867_negative	54	64	48	60	53	55	74	57	70	35
CCGCTAGCCGTCTGGG	ref_867_negative	31	52	39	41	54	26	48	34	36	27
TCTTACAATATCTTTT	ref_867_negative	36	66	45	51	35	40	59	46	47	33
TTCCCCGTTAAATTCA	ref_867_negative	0	0	0	0	0	0	0	0	0	0
CTAGCGGAGTTTCTAC	ref_867_negative	41	52	41	46	61	29	45	25	64	37
TGCCTTGTCAGTTCAA	ref_867_negative	6	9	14	3	14	9	12	4	2	12
TCGTTCGTTCCTCATG	ref_867_negative	39	40	26	39	41	28	46	27	53	34
CTGTACTCTGTTGCTA	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GGTTCTGCAAACTGAA	ref_867_negative	4	6	11	20	11	6	18	10	10	7
AGCAGCAAATTGTCAT	alt_867_negative	30	38	46	29	39	37	38	33	64	34
TAACCTGTTACTTATG	ref_867_negative	153	127	157	137	133	130	145	140	180	100
GGTCCTCTTCGTAAAA	ref_867_negative	23	16	10	15	11	12	22	16	14	8
AGGGTATATGTGCCGC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TCAATATATTGACTGT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GATAATGATGTGTTCT	ref_867_negative	4	11	16	13	9	8	8	12	8	9
GGCCTTAGTGATTTGA	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GCGTAATGGGTCGTGT	ref_867_negative	14	14	12	12	19	11	13	8	15	13
CATTATAATGTGTAAG	ref_867_negative	0	0	0	0	0	0	0	0	0	0
CTAGAGCATAACCTAC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GTTTTGATCAGTGTTT	ref_867_negative	31	50	38	38	53	29	39	30	51	30
CCATCAGATCGCTAAG	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TACTTCGGTATAGATT	ref_867_negative	113	178	169	148	199	104	181	123	190	108
AAGTCACCCGACCTCG	ref_867_negative	25	18	15	27	38	18	38	21	36	13
TCGGGAGTGCTTTTGG	ref_867_negative	5	6	2	4	4	1	1	0	5	4
CGTTACGCTTATTTAC	ref_867_negative	31	29	16	23	34	13	31	22	30	22
GGTCTGCTTCGTGCGG	ref_867_negative	29	41	31	16	25	16	34	21	27	20
TGTGTGCTCTGGGTCC	ref_867_negative	27	30	24	31	41	30	52	19	33	32
GACGGTGAGACGCCAC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TGCTCGTCTTTCAAAT	ref_867_negative	27	25	24	31	26	16	38	20	28	21
GCTAAGACATACCTCA	ref_867_negative	35	38	34	37	43	29	38	35	57	34
CTTGGGTGGTGCGTAG	ref_867_negative	0	0	0	0	0	0	0	0	0	0
CTGCGCTGGTCTTACT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TATTATGGCTACGACT	ref_867_negative	16	42	29	24	55	18	34	23	28	13
TCTGTCAGGGCCCCTT	ref_867_negative	10	6	1	5	1	5	4	5	7	5
GTGTGGTGTCAAGCAA	ref_867_negative	12	11	13	11	12	7	20	14	27	16
AGAGCGTTTCCGTGCT	ref_867_negative	2	0	2	0	1	2	2	1	0	0
ACTCTCCCTGTTATCC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GATGCTGGACTCGGGG	ref_867_negative	29	44	40	45	39	26	40	31	38	29
AGATACAGTCAGAGCT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GACACCGGCGGCTATT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
CCTTCACGGGAGTCTT	ref_867_negative	22	23	24	25	22	20	19	9	32	17
ACACCTTGGCAGTCTG	ref_867_negative	8	13	4	6	12	12	17	5	10	12
CGCTATGCTTGTCATT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TTTCAGTTGTGTCACT	ref_867_negative	61	96	84	83	129	76	80	70	108	59
CTTTGTCTTGATCTTG	ref_867_negative	10	13	18	15	13	16	16	13	18	11
TTTCTGTCCAGCAGCT	ref_867_negative	12	12	9	11	14	12	11	10	17	10
CATAGATAATCATATA	ref_867_negative	86	117	107	86	98	74	130	80	97	87
TGTCTTGAATTAAAAT	ref_867_negative	34	18	32	31	37	35	34	29	20	23
TCTCCTTCTTGACCCA	ref_867_negative	36	55	47	51	52	24	43	55	64	44
CACTTATCCTTGTATT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
ATACCGTCTCTGTGAG	ref_867_negative	2	6	5	4	15	7	19	4	21	8
TTACGTTGCATTCGTG	ref_867_negative	24	36	29	33	34	24	20	22	39	33
CTTAGACTATCGGTGC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
ATTTCCTTGCATTTAC	ref_867_negative	45	60	60	52	60	37	61	27	57	30
AAACTCGGGAAAGGAC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TTTGTAGCTCCCTCTT	ref_867_negative	61	58	43	57	64	33	66	45	63	54
GGTCGCGTGGATGAAG	ref_867_negative	8	7	5	6	12	7	12	8	7	10
GGTACACGTAGTCATA	ref_867_negative	21	18	18	11	18	20	27	9	25	14
CTAGCATGCGGCATGG	ref_867_negative	6	11	8	6	3	15	10	13	12	9
TGTGATCCGGTCGATG	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GGTGGTTCGATTTCTA	ref_867_negative	12	16	6	14	5	11	10	11	11	11
TTTTGTAACAATTGAG	ref_867_negative	18	28	37	15	21	24	36	29	31	22
CTGGTTCGCCTCTACT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
CGTATGTAACGATCTA	ref_867_negative	54	49	53	64	43	44	54	51	82	53
CGCCGTAGAATTGATA	ref_867_negative	12	12	20	14	11	9	33	8	14	9
CCTGACCCGATCGACG	ref_867_negative	6	10	10	12	8	6	6	8	11	9
TAAACCAGGACCAATC	ref_867_negative	0	0	0	0	0	0	0	0	0	0
AGTGTTCGCCCAACTA	ref_867_negative	5	6	4	6	6	5	3	3	4	3
TGGTTAATGGAGACAA	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TCTGTTTGGACCGATT	ref_867_negative	13	12	11	15	21	11	18	10	16	5
GGACTCATCTGACTTA	ref_867_negative	0	0	0	0	0	0	0	0	0	0
CGTGGCATCAAAACCG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
AGCTGTTTGTGTGACG	ref_867_negative	9	18	7	6	10	8	14	5	23	6
TATATCTCATCTACAT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
ATCTAAGCGTCGCCCC	ref_867_negative	15	12	4	6	18	5	3	8	10	6
TCTTTTTGCGATTCCA	ref_867_negative	28	27	34	31	37	31	31	23	45	24
CATGCGCATCCCTTGA	ref_867_negative	8	12	11	1	14	9	14	5	14	8
CGCTAGCGTACTCTGT	ref_867_negative	9	10	12	6	13	3	15	5	14	4
ATACAAGTGATGCTGA	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TTACATGTCAGCCGTC	ref_867_negative	88	55	67	51	70	50	62	51	59	46
TAGCTTTAGCGAGTAG	ref_867_negative	58	68	62	52	60	64	68	33	61	31
TACCTGTGTGCATCTT	ref_867_negative	21	24	26	25	26	16	34	16	38	23
CACTTATCCTCGTATT	ref_867_negative	0	0	0	0	0	0	0	0	0	0
GCGTGATTAGTTTCGG	ref_867_negative	28	46	24	25	34	34	31	20	44	26
CAACGTCGCGTGGGTG	ref_867_negative	24	30	30	34	31	26	36	17	44	26
TTGGGAAAAAGGTTGA	ref_867_negative	17	20	15	15	24	13	19	14	23	9
GTCCATTACGGACATC	ref_867_negative	60	59	72	75	63	61	54	41	64	56
TCGGTTCAGGCCAAGT	ref_867_negative	55	45	56	60	58	51	66	67	62	48
AGCTGCAAAACATATC	ref_867_negative	33	28	40	29	45	32	44	36	44	24
AACACGCCACGTTTTG	ref_867_negative	17	22	21	13	21	14	23	12	25	21
CGAATCTATCACTTCA	ref_867_negative	0	0	0	0	1	1	1	0	0	0
GTGAGTGCGTAATCTA	ref_867_negative	8	18	11	8	20	13	17	9	16	7
CAATGGTGAGTGCCGG	ref_867_negative	0	0	0	0	0	0	0	0	0	0
TACGATCCCGTTCACT	alt_534_fdr	145	166	183	185	150	158	135	151	183	145
TTCAAACTTACGGTAC	alt_534_fdr	34	34	39	28	54	39	30	20	31	24
GTAACTTGTTATGAAT	alt_534_fdr	108	110	100	92	108	104	117	80	105	90
CATTCTACCGATAGCG	alt_534_fdr	250	260	317	258	279	238	289	228	267	214
CCATTAATATCGTACC	alt_534_fdr	8	5	4	2	7	4	6	5	4	3
ATTCGCTATATCTTAG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TCCTACCCTGCCATCG	alt_534_fdr	13	33	25	20	21	23	20	32	34	18
AATTGTCGGGTATTTC	alt_534_fdr	71	73	74	30	53	63	69	58	68	49
CTCAGAGGCTCAGTAA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGTTGTTGCCCTT	alt_534_fdr	6	7	5	8	8	5	6	10	3	4
GGGGCAGGAGAAACCT	alt_534_fdr	14	22	19	13	20	11	18	24	19	21
AGTTGCGTCGTGCCTT	alt_534_fdr	41	24	46	36	32	34	46	27	46	26
CCACAATTGTAGCTTA	alt_534_fdr	15	31	18	21	33	18	33	11	34	19
ACGCATAGTTAACGTT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTCTATTCACCTT	alt_534_fdr	221	207	286	265	207	202	242	221	238	191
TCACGTAACATCGTTG	alt_534_fdr	18	15	17	16	22	14	10	18	28	18
TCACACTAAACACGTC	alt_534_fdr	104	117	104	104	129	95	97	101	115	93
CCCCGCATTGGATCAT	alt_534_fdr	0	7	1	6	6	2	13	0	18	2
GAACATACTCGGCTCA	alt_534_fdr	33	20	28	22	35	27	31	25	29	28
TCGCGCCAAACGGACG	alt_534_fdr	34	25	35	40	52	45	39	33	50	39
TTTGGGGCCACAAACA	alt_534_fdr	31	33	40	28	33	20	47	32	36	26
AGCTCCGATTATCTGT	alt_534_fdr	41	24	38	32	46	30	40	23	30	29
GTCACTCACTCTTTGT	alt_534_fdr	58	62	86	77	78	66	79	70	67	65
AGCGGCAAGGTCTATT	alt_534_fdr	31	26	35	40	51	34	47	46	46	32
CTCTCGCTGCTGTATG	alt_534_fdr	100	101	106	98	98	109	94	77	83	76
TTACTTCGGTTGTTTG	alt_534_fdr	47	65	64	57	68	53	62	54	67	44
CGCTGAACACACTTTT	alt_534_fdr	51	45	66	31	46	48	40	42	37	48
CTCTCTATTGCCACGT	alt_534_fdr	27	33	19	17	22	11	27	27	22	22
TTTCCTATTGCGAGTC	alt_534_fdr	11	14	17	15	23	8	15	19	12	20
AACTGACGTGTCGTCA	alt_534_fdr	32	45	47	44	45	34	56	30	54	34
CGGATTCGCGCGACCT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATGAACCATCGT	alt_534_fdr	78	64	101	88	73	77	62	76	68	75
TCCTAACTGAGCCTTC	alt_534_fdr	53	64	53	40	77	49	52	47	78	55
AATCTCACATAGTGTA	alt_534_fdr	146	161	173	175	168	156	169	153	155	129
GCTCCGACTAAGATTC	alt_534_fdr	24	20	25	20	25	18	29	13	34	21
AGATGACACGATCGAA	alt_534_fdr	79	72	82	91	57	68	68	63	70	76
TCTGAGTTATTCTACA	alt_534_fdr	13	12	17	14	17	15	10	12	9	6
TAGCACCCCTATTTGT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
ACCAACGGGTGCGTAT	alt_534_fdr	43	47	57	52	55	43	62	45	60	39
CCGTGAATTTCTCCAA	alt_534_fdr	28	52	53	46	72	30	79	41	78	30
AGCGTGTCTCTATTCA	alt_534_fdr	53	51	51	42	51	40	67	48	60	32
AGTTCCAAACGCATTG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
ACCGGGGATGAGGCCT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
CGGTGTGGGCCTACTT	alt_534_fdr	30	23	46	44	32	33	44	35	35	29
GTGGGACCTTCTCACG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
CGATATAGGCCATTTA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAACGTCATACTC	alt_534_fdr	37	34	40	31	38	30	34	28	40	33
TAGGGCGTTACCCGTA	alt_534_fdr	24	9	11	10	14	9	7	12	11	10
ATCCGCCCTTATGTAG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGCTTCTTGAGG	alt_534_fdr	4	8	16	9	5	5	20	7	9	5
ATTTAAGTGAACTAAT	alt_534_fdr	18	12	21	18	12	26	27	14	17	17
TCTAACAACTGTCATC	alt_534_fdr	23	19	18	22	14	11	22	11	13	16
AGCTTGTGGCTTATGA	alt_534_fdr	36	61	36	55	57	32	33	34	47	36
TCCGTTTCTATTCGAG	alt_534_fdr	64	62	78	68	50	69	50	49	74	40
AGCATTCGGCGCTGGA	alt_534_fdr	7	11	6	10	8	19	19	7	15	12
AATCTGATAACTCGTC	alt_534_fdr	161	173	176	141	163	147	149	146	178	129
CACCATTATCTTTATG	alt_534_fdr	44	37	53	49	28	41	47	42	32	25
GGGAGTTCATACCCGC	alt_534_fdr	7	15	12	12	9	9	11	10	7	5
GTGTCCGTACAACATA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
CGGTATCGGGGGGCCA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TTATGTTAAACGCCTA	alt_534_fdr	24	32	40	34	34	22	37	25	34	24
GTTCCTAGATCTCCAT	alt_534_fdr	50	50	33	42	44	55	48	44	43	37
TAAGCAATGGTACTAT	alt_534_fdr	39	28	39	44	41	39	34	36	55	33
CTCACGGTGTTCAATT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GCGAACTGGTGTCTCT	alt_534_fdr	29	20	33	26	22	20	19	19	29	22
CCCTACATACAAGACC	alt_534_fdr	92	66	85	70	84	78	63	73	104	65
ACGACGTCGGATGATG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTCCACGCTTCGC	alt_534_fdr	183	157	210	179	181	187	195	181	196	149
GGATCTAGGCTCCCAC	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
AAACTGCGTTTGATTC	alt_534_fdr	63	63	95	73	39	78	64	52	57	59
CCATCAATAAAACACC	alt_534_fdr	47	54	56	45	63	47	60	52	74	64
ACGTTTGTTTACACGA	alt_534_fdr	132	144	165	125	130	141	128	123	121	148
ACCGTCTAGGTTTCTA	alt_534_fdr	89	112	99	86	92	99	108	86	93	85
CTTTCGCTTTATCGAC	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
ATGCATTCCGCTATCT	alt_534_fdr	17	21	24	14	19	15	10	11	17	13
TGAAGCGAGTATGGTG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
CTCCATTCTCGTGAGA	alt_534_fdr	25	36	22	27	32	28	27	17	47	17
GAGTTTGTTCTATGGG	alt_534_fdr	21	18	22	19	20	27	18	19	30	17
ACGGGCATTGGCGCAC	alt_534_fdr	4	4	3	8	3	4	4	2	3	2
TCCTGGTCAGGAGTTC	alt_534_fdr	12	15	13	17	17	12	15	9	25	15
ATCGGCTCCCTAAAGC	alt_534_fdr	11	25	23	11	22	15	22	11	17	14
CGTGGTGGTCACAGGA	alt_534_fdr	0	0	1	0	1	0	1	2	1	3
TCACGCATCTTCTCCC	alt_534_fdr	14	31	51	30	34	23	32	22	28	26
TATATTGGGTGACAGC	alt_534_fdr	6	8	15	11	10	12	16	14	9	9
TTATCGCGAATTCTTT	alt_534_fdr	61	62	63	66	60	66	42	66	66	62
CCAGGTGACCTTGCTC	alt_534_fdr	32	16	41	26	24	18	34	30	35	24
TCACAATCCTATGCAC	alt_534_fdr	8	6	19	10	10	15	19	10	9	16
CTTCAGTGGAAGTGCC	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GCTACAGTAAGGTGTA	alt_534_fdr	79	110	130	100	102	98	120	103	123	76
CCCTCTCGTCACTCCA	alt_534_fdr	86	109	125	111	104	104	90	89	103	83
AGACCCAGGCCTCCAG	alt_534_fdr	87	77	88	84	97	76	99	79	80	69
CCAAACAGCGTTGGTC	alt_534_fdr	65	71	91	82	75	71	81	63	78	69
ACAGCTAGGCCGCATG	alt_534_fdr	64	63	69	61	60	56	39	53	58	46
TACAGTTCCAGGCCCC	alt_534_fdr	30	52	35	26	36	39	54	41	55	27
CTAGCACCTCGCTTTC	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
CCATACGGCTACTGGC	alt_534_fdr	20	8	10	13	13	5	11	13	15	14
TTGAGATGAATTGTGA	alt_534_fdr	94	116	113	91	106	88	116	86	100	92
CATGTCACTACGGACA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGGCTAATATATG	alt_534_fdr	68	68	86	51	58	63	68	59	61	44
ATGAAACAATCTCAGC	alt_534_fdr	53	52	51	41	37	45	58	47	63	56
TACCATGGTCGTGTAG	alt_534_fdr	106	106	140	113	103	122	122	104	125	86
CGCTTGTTCCCACCTA	alt_534_fdr	253	277	269	241	279	217	291	206	294	205
TGTCCTTAGAGTAAGC	alt_534_fdr	23	15	34	19	18	18	29	14	24	16
TCATAGATTACTTTAT	alt_534_fdr	82	119	77	86	143	62	156	62	132	53
TTACGCTTTAATTTTA	alt_534_fdr	2	1	7	0	1	1	7	5	3	3
GGCCTCTATACACCTT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
ACAGCACTCATGGCGC	alt_534_fdr	48	43	71	60	53	51	56	60	54	43
CGCAAACTCTTATGCA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TATCTACCTCATAACC	alt_534_fdr	45	54	53	46	42	43	43	48	40	30
TTACCTGCCCAAGTCT	alt_534_fdr	18	23	22	21	19	19	33	16	31	17
GGGCTGACCACCTACC	alt_534_fdr	26	21	19	14	35	20	43	19	32	27
TTTCGGCTGGGATACA	alt_534_fdr	0	1	0	0	0	1	0	2	0	0
CATCGGTGAAGGGGCA	alt_534_fdr	15	19	15	15	24	14	18	18	29	22
TGCACGTATTCGAACT	alt_534_fdr	0	0	1	1	0	0	2	2	0	1
GACTGTAGGTACAAAC	alt_534_fdr	15	26	22	18	15	24	26	9	27	19
TACACTTGGCTCAGGG	alt_534_fdr	11	11	15	6	10	10	15	16	14	19
GGCGGTCCTGGGACCT	alt_534_fdr	39	28	37	39	24	30	47	29	45	26
TCTCCTTGCACTTAAT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTGAATATGGAAA	alt_534_fdr	37	37	59	47	41	53	37	36	45	26
GCGTGTCACTTGTGCA	alt_534_fdr	16	16	25	17	13	15	22	23	25	14
GGTGGCTACTAATATA	alt_534_fdr	7	7	13	8	13	6	6	7	11	6
GAGGAAGCCCTTCAGA	alt_534_fdr	19	27	32	34	26	28	24	13	28	20
CTTCAAGTCTTAGCAA	alt_534_fdr	1	1	3	0	0	1	3	1	0	0
TTGCGCTCGTATTGCC	alt_534_fdr	38	54	54	56	66	48	55	47	49	50
AGCTGCTACACATTAG	alt_534_fdr	3	2	1	4	3	5	2	1	2	3
GAACGAGTCTCTAACA	alt_534_fdr	89	91	115	102	87	116	104	77	115	102
CTAATCCTTTCTTTTG	alt_534_fdr	58	50	74	55	68	47	49	71	54	44
CGGAGGCGATTTTTAC	alt_534_fdr	24	23	31	30	29	30	30	23	25	25
GGCTATCATTCGGCTG	alt_534_fdr	303	353	378	325	345	287	299	344	310	315
TATCTCCAGCCAGTAC	alt_534_fdr	30	25	31	17	29	18	29	22	27	24
GTTCTTAAACTATGCT	alt_534_fdr	65	66	86	69	52	61	54	57	66	60
ATGTTACTCCATCCCT	alt_534_fdr	77	86	117	69	87	77	78	71	102	69
TTGGTTATATCTGCTT	alt_534_fdr	42	38	35	33	42	32	30	30	45	32
TACTGTTTGTTCGGTT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCGAGGCTTTATA	alt_534_fdr	33	32	33	35	31	32	42	19	28	22
CTGGCCTTTTAATTCC	alt_534_fdr	21	45	44	37	49	28	48	25	48	20
GGTTAACAGATTGGTC	alt_534_fdr	24	21	31	25	14	23	23	16	28	24
CTTATTATCGGGATAT	alt_534_fdr	163	168	152	158	181	124	196	130	221	152
GTCTCCTCATATTAGT	alt_534_fdr	49	38	49	48	48	50	65	43	52	22
CCCACTCTCCGTCTAG	alt_534_fdr	20	83	39	33	85	27	90	20	82	25
TCGTACCTCAATAACC	alt_534_fdr	61	82	88	84	85	99	99	82	83	74
TTGATTGAATAAAGGT	alt_534_fdr	25	24	33	21	25	34	26	18	32	16
CTAACTCTTAGAGAGC	alt_534_fdr	44	28	44	31	35	33	36	19	28	22
CGGGTGTTTAGCAAAA	alt_534_fdr	24	11	11	20	12	16	12	14	16	6
CGCACTCATCGGTTGA	alt_534_fdr	23	14	19	19	10	16	13	22	16	15
TCAAGGCACTATTACG	alt_534_fdr	66	69	79	62	66	61	81	56	67	37
GAGCCTTTAAGTCGCG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCCATCGCGTTTA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTACCAAGATTTT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TGATAGATCTGGGAGT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTCTTGGATTAGG	alt_534_fdr	6	13	3	13	9	7	10	7	12	5
AGTAGATGTGGAATAA	alt_534_fdr	38	44	69	55	35	47	36	60	45	40
CTGTTTAGCAGTATCA	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCGCAAAGTTCCT	alt_534_fdr	42	18	26	26	22	19	36	27	28	20
ATAGTCAGTCACCTAG	alt_534_fdr	96	75	122	89	105	79	93	83	108	75
CCTGAAGTTCTAACCT	alt_534_fdr	7	4	1	2	3	3	1	0	3	3
TTGTTTCGGCAGGCAG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTGCATTAGATCC	alt_534_fdr	109	130	127	105	119	107	128	111	137	98
AATGCTCTTCCGTCTT	alt_534_fdr	21	11	27	17	6	27	17	21	18	17
AGACTAGACCAGCAGC	alt_534_fdr	9	12	14	24	15	11	14	12	18	16
AACAGTCCCTACGTTG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TGTAAATAGTAATGCT	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TCGGATTTACCGTCTT	alt_534_fdr	49	49	53	51	47	52	53	52	59	46
AAGTCAGCTGGTCCTG	alt_534_fdr	25	39	43	45	33	36	48	32	47	28
AATTCCGGACTTGATC	alt_534_fdr	8	10	7	10	8	3	10	4	5	6
TCGCTGAGTTGCGAGG	alt_534_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGGTCATGTAGCA	alt_5738_new	71	68	85	64	78	56	84	47	102	48
TCCCTGTTACTGTCGA	alt_5738_new	14	27	16	14	27	14	20	12	24	11
CGGCCTGTCTGACGTC	alt_5738_new	38	70	38	32	70	32	64	24	75	23
GACGCTTCTTGATCAG	alt_5738_new	59	75	77	67	82	72	104	70	79	57
TAGACTGTCTTTTATC	alt_5738_new	0	0	0	0	0	0	0	0	0	0
TTAAACCTGAGAACAA	alt_5738_new	60	98	91	56	84	88	93	55	101	65
CTTGCGTATTAAGGTT	alt_5738_new	8	5	7	10	8	6	3	5	5	7
AAAGCGCTATTATCTT	alt_5738_new	20	27	26	18	25	17	24	12	19	17
ACGTCAGAAGCTCCCT	alt_5738_new	0	0	0	0	0	0	0	0	0	0
GGGCAAATTGATCAGC	alt_5738_new	0	0	0	0	0	0	0	0	0	0
ACTTTCCTTCATAAGG	alt_5738_new	16	22	20	20	14	17	19	12	22	10
AATCTTTCATCGTCTC	alt_5738_new	107	146	135	126	157	126	170	111	135	100
CTACAGGCTATTCTAA	alt_5738_new	37	65	49	33	64	35	64	29	68	40
TCCGTTCCTGGGCAGT	alt_5738_new	6	4	8	2	8	6	14	3	14	6
ATGGACATCTAGAACA	alt_5738_new	0	0	0	0	0	0	0	0	0	0
ATTCGATTTCAACTGG	alt_5738_new	5	3	3	3	1	1	4	2	0	1
GCATTACTTCTGGGTC	alt_5738_new	0	0	0	0	0	0	0	0	0	0
GAAACACATTCCGTTG	ref_5738_new	0	0	0	0	0	0	0	0	0	0
CATTTCTGGCTATCGG	alt_5738_new	0	0	0	0	0	0	0	0	0	0
AATCTGTCTAGGTGAA	alt_5738_new	29	55	27	24	53	24	34	25	46	32
GCAATAGTCGTCAGGG	alt_5738_new	63	54	61	56	51	54	65	45	56	44
ACGGTTCGATTTAAGT	alt_5738_new	26	36	28	33	50	38	59	30	56	43
CATACCTAATTTCTTC	alt_5738_new	49	58	55	58	76	41	86	51	82	51
CGGGTGACCGATATCT	alt_5738_new	15	19	15	9	10	12	15	13	24	18
GCTGGAGCAACCTGAT	alt_5738_new	11	19	27	9	30	12	22	13	18	17
TCGTGACCAATAAGCA	alt_5738_new	34	43	36	25	29	32	31	18	35	16
CTCAGTCCGCGCCTAG	alt_5738_new	43	70	66	40	82	62	71	55	78	45
TCACGTACGCTTGCGC	alt_5738_new	5	7	4	3	16	3	6	2	6	6
GGCGGAAATACTCTTT	alt_5738_new	59	59	68	47	66	59	71	57	71	65
TGGCATTGTGTGTAGC	alt_5738_new	32	78	75	36	70	35	76	53	77	30
CTCCACCGTACTTTGC	alt_5738_new	5	29	22	14	27	14	32	17	47	7
GTCTGCTTCTCATTGC	alt_5738_new	36	49	46	41	52	39	60	34	46	36
CATTATGTGCGCAAGC	alt_5738_new	44	43	42	31	44	42	41	28	46	28
ACGGGTTTATACCATT	ref_5738_new	204	330	257	211	341	245	354	211	336	180
ATTACCGTAATCTCTG	alt_5738_new	3	8	3	7	9	6	8	6	7	4
TGGCGATCAAATTAAC	alt_5738_new	73	109	85	84	119	77	124	68	116	57
GTCTACAGTTTATGGG	alt_5738_new	46	52	50	64	66	42	65	38	55	44
ATAAGATGGGCTAACG	alt_5738_new	3	9	5	4	10	5	17	6	12	10
TGTACCGTCATAAATA	alt_5738_new	69	91	69	72	92	59	105	38	117	59
TCCCTTATGAACTATC	alt_5738_new	0	0	0	0	0	0	0	0	0	0
GAAGGCCTCACTGAGG	alt_5738_new	31	34	35	45	50	39	45	37	58	23
GCACGATGAGGTCACA	alt_5738_new	0	0	0	0	0	0	0	0	0	0
GTGAGATCCAGTCGAA	alt_5738_new	6	6	13	4	9	2	10	6	18	6
TGTGGTACCAAGTTCA	alt_5738_new	0	0	0	0	0	0	0	0	0	0
GGGGCCTCGCAGATTC	alt_5738_new	37	48	47	38	44	40	56	51	46	38
AATTCGTGTCGCGCTA	alt_5738_new	6	3	3	2	8	1	1	0	4	1
GGAACCCCCCTTTGGT	alt_5738_new	3	13	1	7	11	4	15	2	17	5
GGCTTACGGGTCACCC	alt_5738_new	0	0	0	0	0	0	0	0	0	0
CTCCGGTATTATAGTT	alt_5738_new	78	92	82	105	118	75	105	80	110	85
TTCCAGAACTATAAAT	alt_5738_new	0	0	0	0	0	0	0	0	0	0
CGCCAGTTGCTGCATG	alt_5738_new	26	46	34	30	49	30	64	29	52	40
GGGAACCCTGCTATAG	alt_5738_new	58	78	70	60	81	74	89	53	100	61
TGAGTCGGCTAACTCT	alt_5738_new	12	20	8	9	5	13	16	13	13	12
GTCCTCCTCCCAGTGG	alt_5738_new	34	80	61	68	63	53	63	59	90	48
TCACATAATCAACATC	alt_5738_new	0	0	0	0	0	0	0	0	0	0
TTCAAGTAGTGAGCGT	alt_5738_new	0	0	0	0	0	0	0	0	0	0
GATATCACTTAGGTCT	alt_5738_new	0	0	0	0	0	0	0	0	0	0
TGGAGTTAAATAGGTG	alt_5738_new	31	33	39	44	46	40	46	38	43	37
TCCAAATCCATTAAAT	alt_5738_new	33	80	51	33	95	30	72	41	62	32
TTCTTTTCCTGTTTAA	alt_5738_new	92	121	121	111	135	80	105	89	121	92
AGGTATAGGCTGTAAG	alt_5738_new	7	21	10	13	12	6	9	18	15	11
TAGCTATGCAAACTCA	alt_5738_new	17	21	22	21	16	11	19	17	25	9
CGGTTCGTAGCGGCAA	alt_5738_new	0	0	0	0	0	0	0	0	0	0
ATTGCCACCTGAACGT	alt_5738_new	28	35	35	33	41	24	35	18	42	22
AGAATATATTTTCTTT	ref_5738_new	69	72	68	84	92	81	80	95	100	62
CACGCAGGGTCAATTC	alt_5738_new	0	0	0	0	0	0	0	0	0	0
GTTTCTTTTCAAATTG	alt_2515_reverse	18	6	21	18	12	20	14	22	17	22
CGCCTCCTCGACCATG	ref_2515_reverse	2	0	2	0	1	0	1	2	3	1
TGGTGTTTCTAAAACC	ref_2515_reverse	46	51	81	36	62	64	47	42	88	50
AAGAGAGTTCACAAGC	ref_2515_reverse	65	41	58	31	53	33	36	29	40	34
ACACAAAACGCCCCTT	ref_2515_reverse	8	10	11	15	8	7	7	8	8	15
GTCATCGCTCTAGTTA	ref_2515_reverse	31	21	38	34	26	31	30	20	31	25
TGTCGATCCCCCCGGT	ref_2515_reverse	27	17	29	24	12	24	23	18	21	19
CTGCCAGTCCGTGTAT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CGGGGAATCGATTCCT	ref_2515_reverse	36	39	59	67	43	44	42	47	56	31
CTTCTCTTCTGGTGGT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
AGATTTCTTTCTTCTT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CGCAACGCATTTTAAA	alt_2515_reverse	75	59	71	68	89	72	73	65	73	50
CTCGGGTTTTTTTTAA	ref_2515_reverse	6	0	9	3	5	3	3	5	2	4
CACTTCGTATGCGTTC	ref_2515_reverse	33	33	33	29	33	27	41	32	47	27
TGCGTCCATCTTGCTC	ref_2515_reverse	190	139	187	166	121	162	187	172	134	163
TTCAGGTTAGTTGAGG	ref_2515_reverse	14	9	20	13	13	23	12	8	12	10
TGTTTAAATCTGAATA	ref_2515_reverse	16	8	18	13	12	7	13	10	7	18
CTGGCTTCTGTCAGTC	ref_2515_reverse	88	89	123	97	119	98	108	78	111	89
TCCTCACCTCTCGGGT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TTAAACGTTCTTTCGT	ref_2515_reverse	37	42	27	24	26	38	31	24	36	30
GCCGGCCATTGACTGT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGTCTTCACGGCA	ref_2515_reverse	5	11	9	4	6	11	8	3	9	7
ACTTTATTCGATACAG	ref_2515_reverse	243	299	314	280	323	219	354	248	334	236
GTACACGTCTGGGATT	ref_2515_reverse	44	40	38	38	58	37	51	40	48	38
TTTTCATGGCAGCAAG	ref_2515_reverse	71	54	80	69	64	88	75	71	80	69
CCTTCCGGATCTATAA	ref_2515_reverse	27	36	46	27	27	32	21	26	42	32
GCACCACCTTTGGCGA	ref_2515_reverse	64	55	64	50	81	55	44	53	64	46
ACTGCAGTCTCGATGC	ref_2515_reverse	5	15	7	7	27	5	18	9	10	5
CGACTTGACTGGTACG	alt_2515_reverse	100	97	98	85	92	75	96	96	88	60
TGTCGGGCCAGACGTT	ref_2515_reverse	66	61	48	55	40	44	53	53	54	61
ATTGTCCAAAGGCCAC	ref_2515_reverse	4	10	6	4	6	4	4	7	11	6
GTTGATCTTAGCGTAT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TTGCATGCGCCCGCGG	ref_2515_reverse	77	75	111	81	79	56	71	69	68	74
GTCCGAATTTCTCTCT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGGGATGCTCGGA	ref_2515_reverse	36	26	44	32	39	43	39	29	38	42
TGTCTGGTTCGCCCTC	ref_2515_reverse	6	5	7	5	7	3	4	9	4	9
TTAATTTCTTACGGCT	ref_2515_reverse	24	37	44	31	33	28	28	21	30	24
GTAGGCTAACGTAATA	ref_2515_reverse	29	33	48	39	24	35	32	37	34	38
TCTCCGTAGCCAGCGG	ref_2515_reverse	44	41	52	47	47	44	41	44	38	43
CACCTCAGATTCACAT	ref_2515_reverse	6	4	8	8	7	5	5	4	12	4
ACCGGAAGCAATACGG	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGTGTGGGCCTAG	ref_2515_reverse	6	5	6	4	7	5	9	5	8	10
GCGACCGGTACGGAAT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCGTTGCTTCGCA	ref_2515_reverse	14	5	6	6	7	8	6	13	8	13
TGGTTCTCGTTTTCTA	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
ACCTCGTTATGCGGGG	ref_2515_reverse	55	48	55	34	54	40	49	51	53	41
CTGTCAGTCCGTGTAT	alt_2515_reverse	0	0	0	1	0	0	0	0	0	0
GGCCCACCATGGATGG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGGGAAAGCTGGA	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAAGGCTCCTCTG	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGTAATTGCACGC	ref_2515_reverse	32	44	45	37	33	32	41	32	47	46
TTACACAGATATGCCC	ref_2515_reverse	17	12	10	12	14	20	10	16	20	15
GAGTACACCGGTCTAA	ref_2515_reverse	26	107	29	26	107	43	107	34	125	37
TTCGTTGAGCATGCGC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTATGGGTCATCG	ref_2515_reverse	156	144	170	161	144	144	144	133	149	140
ACTGCTAAGCTCAGTT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TATAGTCTACTCAAAT	ref_2515_reverse	11	18	12	15	18	12	11	14	11	7
ATTTCCGGTTTTTCCC	ref_2515_reverse	2	0	1	1	1	1	0	1	0	0
TCTGGGGCATGTTCAA	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
ACTAAGTTACTGCATA	ref_2515_reverse	78	65	94	72	61	42	73	46	84	44
TTAACTGTTTGGATCC	ref_2515_reverse	36	35	29	27	29	24	30	13	30	25
CATGGCATACCCCCGG	ref_2515_reverse	39	33	46	41	33	37	35	40	26	45
GCGGGGGTTCATTACC	ref_2515_reverse	92	75	145	99	100	88	84	86	96	96
CATGATACGTGAACGC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
ATATCTCCTGTGGTAG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GTCACACGGATTCCAA	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCTTAGAAAGGTG	ref_2515_reverse	28	29	37	22	56	38	27	37	37	41
CATGTCAGGCAAGAAC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TTATATTAGATCGTTC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCTCTATTGCGA	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCTCCCGGTAAA	ref_2515_reverse	29	45	59	42	52	38	49	38	52	29
ACTTAGGTAGGTTAGG	ref_2515_reverse	3	10	12	11	15	5	7	9	10	14
TGCGTCAAGCTCAGAT	ref_2515_reverse	85	71	109	99	93	90	107	90	85	72
GCTGCCGGATCACAGA	ref_2515_reverse	15	11	12	21	14	20	16	19	17	25
TGTTTATCTGACTTCT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGGGGTAGAATTC	ref_2515_reverse	1	6	6	4	4	4	2	6	5	2
CGCAAACTTCCCCAAG	ref_2515_reverse	17	31	23	36	52	10	66	23	57	17
TCTTTTAAGTGATAAC	ref_2515_reverse	50	50	66	41	49	46	61	49	55	42
CCAACGCCAGGTAACC	ref_2515_reverse	21	15	26	15	22	21	12	14	17	17
TTATCTGGCGCTGTGA	ref_2515_reverse	97	114	118	106	104	103	111	70	126	97
TCCACCAGCGTAGTGG	ref_2515_reverse	5	9	13	14	16	4	19	10	21	10
AGTCAATGCTTGTCAG	ref_2515_reverse	34	47	40	34	26	28	30	32	27	17
ACATCACAGCGCGATG	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTCGCTGCTGGAA	ref_2515_reverse	48	38	56	48	52	46	44	51	50	45
TTACGGGCCAAGTCGG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTCCATCTTGCTC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TCACTTGTCAAGCATT	ref_2515_reverse	46	52	80	46	59	53	59	39	54	42
TAAAGTTCAAGCCTGT	ref_2515_reverse	74	98	91	105	106	95	92	62	101	74
TAATGTCCTTGCCCAT	ref_2515_reverse	15	20	15	13	9	17	14	14	14	19
AGCGTTTTCGGGTGTA	ref_2515_reverse	29	29	37	35	27	34	39	38	30	29
TCTCGGCCTTTCTTTC	ref_2515_reverse	140	127	158	119	130	150	136	118	135	117
TACCCAATATTTACTT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTATTCGCGCACC	ref_2515_reverse	9	30	13	20	16	18	17	14	21	15
GTTGAGATGCCTATAG	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGTGGAGCGGGAC	ref_2515_reverse	18	13	14	12	15	23	8	20	24	13
GTAATTCAACGTCTTC	ref_2515_reverse	12	20	22	18	13	15	20	21	12	13
AGGCAACATCCTCCCT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGGGGGCTCGCAA	ref_2515_reverse	21	12	16	22	22	19	13	15	18	17
CGAAACTAGCAATTAA	ref_2515_reverse	15	9	13	9	14	11	3	11	17	11
TGGTGCGAGGCTGTTT	ref_2515_reverse	40	39	33	26	47	31	46	29	45	27
GTAAGTCGCTCTATGA	ref_2515_reverse	13	7	13	10	12	5	13	3	14	9
CGTCGGGTTGTCAAGC	ref_2515_reverse	158	186	191	186	184	180	169	173	199	147
CCGTTGTTTCGACTGG	ref_2515_reverse	9	28	18	18	22	15	15	13	38	13
ACTCAATGATACTGTT	ref_2515_reverse	132	119	161	129	142	132	141	106	137	113
GTAAATTGTTTCCATG	ref_2515_reverse	13	20	13	10	14	21	25	8	15	7
GGCCCTCTCCGCTAAG	ref_2515_reverse	108	72	106	94	66	78	99	81	87	98
TGCTATTGCCGTTTTT	ref_2515_reverse	21	25	35	28	19	27	24	23	24	19
AACTAGAAATTCATTG	ref_2515_reverse	22	33	23	34	30	21	25	25	36	16
CCTGTTAAAATCAATT	ref_2515_reverse	45	66	49	51	52	35	49	39	49	42
TGAGCCATAGCATTTT	ref_2515_reverse	2	1	2	6	11	6	3	8	8	5
GCCACGGTACACTCTC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGAATATGGTCCT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGGGAAGGTATTATGT	ref_2515_reverse	35	46	40	39	30	40	41	31	41	33
GAAAGCCAGAGATTTA	ref_2515_reverse	62	68	84	57	65	67	74	46	73	52
GCAGAATTCTGTAGCT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCAGTGAATGTTC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGTGTCTCAAGG	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCACTCAATTATA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTGTTATGACCTA	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTATGGAGAAAGGCGA	alt_2515_reverse	19	20	27	25	18	16	21	25	27	27
GTGTTATTTTCTCCTG	ref_2515_reverse	20	15	29	27	33	20	20	24	22	23
ACGTGAATCCAATGGT	alt_2515_reverse	61	40	46	48	47	41	40	43	49	37
GGATCGACCATGATCA	ref_2515_reverse	4	4	4	11	5	8	14	8	10	5
AGGCGGCTCCCACTGG	ref_2515_reverse	49	47	68	75	49	47	54	53	59	56
GACACCGTTGGAGAGA	alt_2515_reverse	21	20	30	24	11	13	23	12	20	13
TGGTCTACGTAATTGC	ref_2515_reverse	6	3	10	8	5	13	7	7	7	5
TTAGGGAGTGAACGCG	ref_2515_reverse	8	6	8	7	10	7	13	6	9	11
CATTGGTACGAACTGC	ref_2515_reverse	268	240	322	266	268	266	291	264	281	238
CGCCATCCTACGAAGA	ref_2515_reverse	28	28	40	51	35	26	22	28	42	38
ATTGCGGAGTCAGATG	ref_2515_reverse	49	54	59	52	37	71	49	47	50	47
CCGCTGACGGTCCAAC	ref_2515_reverse	46	65	67	52	73	59	60	54	73	48
TTTTACGCCAACGAGG	ref_2515_reverse	17	10	24	16	18	21	17	12	22	16
TCACTCCGAATTTGCG	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CAAAAAGAGTAGTAGG	ref_2515_reverse	20	16	29	16	16	17	12	10	20	13
TTAATGTCCTCCGGCT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGGACAGACGTCAATT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTCTCTCGCGCCC	ref_2515_reverse	116	108	151	119	114	109	112	101	115	120
CGAGCCACATACAGGC	ref_2515_reverse	14	26	38	25	19	21	29	17	17	20
CACCTCTGAGTAAGTC	ref_2515_reverse	5	3	1	5	1	2	3	4	3	1
TCCTCGGCTCTCAGGA	ref_2515_reverse	133	123	170	142	121	161	155	131	140	110
TACTTTACCTGTCCCA	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGAAACCCGAGCCTCC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCGGTCCCGAAC	ref_2515_reverse	21	18	19	13	9	15	19	19	13	11
CATTGTATTTATCCTC	ref_2515_reverse	14	18	21	23	22	21	19	16	16	14
CGGTGCTCATTGGATG	ref_2515_reverse	28	34	40	38	45	35	32	43	57	25
TGGTAAAGATTGCATT	ref_2515_reverse	56	49	68	67	56	56	64	39	67	59
TTAGCGAGCGGTGTGA	ref_2515_reverse	17	21	34	26	24	26	27	15	23	23
TGGTAGAGGGGCCGAC	ref_2515_reverse	50	30	49	33	22	34	31	40	34	31
GCCGTGCTCAACTTAT	ref_2515_reverse	20	25	14	13	14	8	18	17	16	12
TGTTCACTACATAGAG	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTACTCAGCGCGC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TACCATTCCTTTGTTG	ref_2515_reverse	157	179	161	160	177	136	188	141	186	151
GAGTTAAAGTTATTTT	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTTATTCCTTGCAGTC	ref_2515_reverse	119	110	116	110	133	120	125	88	108	93
GTTAATGCTCGGTGGC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGTTCATTACGTA	ref_2515_reverse	9	29	11	12	48	6	35	10	36	4
GGTGAACATGGCAAAA	ref_2515_reverse	3	3	7	1	2	2	5	1	0	1
ATGGAGTTTTCATGCA	ref_2515_reverse	19	18	19	29	15	25	15	10	26	19
GTATAAGATGAGAGGC	ref_2515_reverse	26	19	47	41	34	32	41	27	44	45
TACTTACTACATCAAC	ref_2515_reverse	136	183	168	136	158	158	144	117	178	112
CATTTAGGTACATTTG	ref_2515_reverse	11	9	14	14	8	6	14	6	9	5
TCGTGCAGGCTTGACA	ref_2515_reverse	9	17	9	5	12	9	13	8	9	4
AGTTCTTTATACTGAC	ref_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGAGCTGGCTTGAACA	ref_2515_reverse	2	0	1	1	1	1	4	1	0	0
CTTGACTCGAACGATT	ref_2515_reverse	4	11	6	9	10	7	9	4	16	9
TATAGATTTTGCGTTT	ref_5209_RC	28	27	30	28	37	21	28	12	24	24
GTGCGGTTTTCAGTAA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ATGCTGTTGTTAATTC	ref_5209_RC	16	16	18	20	16	12	28	18	30	15
GAGGCTAGGTGAGATA	ref_5209_RC	23	29	19	20	19	16	22	10	31	15
TGCTGCTTAAATATTT	ref_5209_RC	30	36	24	21	26	30	31	40	28	32
ATAATGCCAATTCCGT	ref_5209_RC	0	2	2	1	1	3	4	4	6	4
GCGTACGGGGGGCCTT	ref_5209_RC	22	39	28	24	31	21	30	24	36	15
TGGTACTCCTGGTTAC	ref_5209_RC	7	22	14	12	24	9	14	13	14	16
GGCCTGGTGCCTGTTT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TAACTGATTTCGCGTT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
GGTCGGCGTCGGGGCA	ref_5209_RC	4	8	3	7	6	6	10	0	9	3
ATCCCTCGCGTAAGTA	ref_5209_RC	14	32	12	12	47	8	31	12	32	15
CGCGATATATACCGTC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CTTTCGTGAAAGTCTT	ref_5209_RC	11	16	14	8	17	10	17	10	18	13
TGGGTCAAAACCCACG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
AGATTTCATGGTCTCG	ref_5209_RC	5	6	6	7	13	5	2	6	7	6
GATCGCGCTCACTGGG	ref_5209_RC	11	8	14	12	10	9	15	9	14	13
TATATCGGTTATGAAT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CCGCGGCCAGCTCGCA	ref_5209_RC	20	27	25	24	19	31	30	21	27	25
TATGATCATCTGCGTA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TTCCAAGGTTCGGCCC	ref_5209_RC	5	4	7	2	2	6	2	12	9	7
TACATTTTTACCGTCA	ref_5209_RC	338	428	372	345	512	284	458	327	560	266
TTCTAACAGCCACCAT	ref_5209_RC	6	8	9	10	13	5	10	8	9	5
TTATTTTGAATCCCAC	ref_5209_RC	19	26	23	20	23	26	28	19	24	25
TTCTCTTTGTGGCCCG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TATTGGGTCCTATGGA	ref_5209_RC	7	13	13	10	8	9	16	10	24	6
TACCATTATTTCGACG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
AATCTGGCACAGTGGT	ref_5209_RC	17	9	12	4	25	18	22	12	23	11
GTTTGTCCTATTGGGC	ref_5209_RC	2	7	8	6	11	4	9	2	8	9
GTTGTATAATCTCCAA	ref_5209_RC	18	32	27	27	26	16	36	20	31	29
GGTCCACAGATCGCGA	ref_5209_RC	3	4	11	3	2	6	12	4	8	7
ACATTCATCTGTATAG	ref_5209_RC	10	11	10	8	12	9	14	10	12	11
TCTCGTACCGTTATGG	ref_5209_RC	24	28	27	25	38	27	23	22	43	18
TGTGCTCCAACGTTTC	ref_5209_RC	11	25	12	21	21	19	19	13	26	22
GTTCTTGTAGTTTCGT	ref_5209_RC	29	28	38	28	31	25	39	20	32	29
GCTCGAAGGTCTCCCC	ref_5209_RC	23	41	43	37	44	34	43	33	42	40
CGCTGGATCGTTGCTC	ref_5209_RC	46	92	98	70	62	64	76	43	81	61
GGCCTGCCTGGGGGTT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
AGCCGTAAGATCAGAG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ATGAAGGCAGCCAGCC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TAGGATCGCACCTTTA	ref_5209_RC	20	39	30	21	51	26	28	14	39	23
TCAATGCTGCTAGCCC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TGCTCACGTTGTTGAT	ref_5209_RC	31	59	44	39	49	39	57	40	63	39
GGAGTAGAATCTCAGC	ref_5209_RC	2	5	2	1	0	2	5	2	5	0
ACAACGTCAGAACCTT	ref_5209_RC	25	55	31	54	51	33	66	28	62	32
AATACTCTTTCGAAAG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TTTAATTTCGCCACCA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TAAGTTCAGAATTGTA	ref_5209_RC	27	43	38	24	36	20	49	27	38	30
CTTCCACTGACTAACT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TTTCGGGTTATATTAG	ref_5209_RC	0	2	3	0	0	0	3	2	3	1
AGGTCGTAGTCCTTTT	ref_5209_RC	27	18	20	12	28	17	28	13	30	9
CTCGGAATGGGAGTCA	ref_5209_RC	4	4	8	2	5	6	1	3	9	1
TGTAATTCTCGTCCCG	ref_5209_RC	0	1	2	0	10	6	4	0	1	1
CACTTCGCTTCTTAGG	ref_5209_RC	1	8	0	1	9	2	2	1	1	1
GTTGCTTTTCCTCTTA	ref_5209_RC	42	36	50	57	59	52	53	29	61	38
CTGTCCCCTCGTCAAC	ref_5209_RC	13	26	14	13	17	8	21	12	23	14
AAGGGCCGGAATTGAG	ref_5209_RC	47	76	60	76	70	57	80	55	81	53
TACATGGTTAAACGAT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ACATCGCGGAAGTTCG	ref_5209_RC	17	23	19	18	15	11	14	21	24	16
CCTTCTTATACCTCAT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CTACCTCCTTTAATTC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TTAGTCCGGTCAAAGG	ref_5209_RC	8	30	17	16	28	8	30	23	29	11
TGTTGCTTAAAAAACC	ref_5209_RC	3	11	8	4	11	6	7	1	6	2
TCGCAATCGTCCCGCA	ref_5209_RC	23	43	44	33	40	37	54	42	54	28
CGTTGCGTAGATATTC	ref_5209_RC	79	89	66	62	87	70	113	57	104	60
GTCTTACGCCAAAGGT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CGGCTCTTGCAGTCTG	ref_5209_RC	5	7	9	9	12	7	12	17	15	9
GCGCCCGTGAATTCAT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TGAGACCGACGTTCGT	ref_5209_RC	30	40	43	35	43	35	50	26	54	35
GTCTCGTCTAATCTGT	ref_5209_RC	13	18	9	18	14	12	23	11	21	9
TCAGGGTAACCGTATT	ref_5209_RC	5	6	9	3	6	8	7	11	10	7
CAATGAATCCCACGCC	ref_5209_RC	95	105	105	103	113	78	119	59	142	70
GTTTTGGACGCTTACT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TGGATCAATGCTGTTG	ref_5209_RC	36	47	47	30	48	29	66	38	67	36
AACCCTTTTGGATTTC	ref_5209_RC	28	32	48	31	43	34	33	23	31	35
ACCCGAATCTTAATGT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
AGTCTTACGTATGTAC	ref_5209_RC	39	69	56	46	80	47	75	39	80	39
CTTTACAGATCTTGAC	ref_5209_RC	47	42	29	27	56	24	39	30	51	29
TCACAGTTCGCCGATT	ref_5209_RC	5	10	6	5	21	6	9	12	22	6
CTGCGTAAGATGGCCT	ref_5209_RC	8	10	14	20	7	11	14	13	9	12
TACATTATTACCGTCA	ref_5209_RC	0	0	0	0	0	0	0	0	1	0
ATGCGTCATCTTTACA	ref_5209_RC	8	11	6	2	4	6	7	6	7	3
TCACGTATGGCAAGGA	ref_5209_RC	35	46	48	28	48	32	40	38	45	32
TATACCATCGCAATTT	ref_5209_RC	58	110	86	70	106	46	84	56	86	64
TGGGCCCCTTGTCTAG	ref_5209_RC	134	176	167	146	194	160	196	123	238	142
CAGATGACGGTACGAC	ref_5209_RC	66	94	79	77	70	62	100	63	101	53
AGAGGTGGACACCCAC	ref_5209_RC	44	51	46	56	31	37	61	31	46	32
GCCCATCAAGTCCGAC	ref_5209_RC	29	29	45	30	32	29	30	23	33	29
GAGGTTCCATCCGCAG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ATAAAATTAATGTGGA	ref_5209_RC	0	0	0	1	0	1	0	0	0	0
TCGAAATTATATTTTG	ref_5209_RC	23	24	24	30	28	21	33	21	33	23
CCTGTGAAGAGGACCT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TGAAGGGCTACTCGTG	ref_5209_RC	72	108	89	55	107	58	105	67	103	72
AACACGTATGGCAGTG	ref_5209_RC	54	74	57	45	90	53	72	43	75	52
TCCTAATTTTCGGAGC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ATCCTGTTCATTGTCA	ref_5209_RC	22	41	37	27	40	35	41	23	56	30
TCGGCTAGCTCGGCCT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CTATTGCTCTTGTTAT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTTGTAGTGGCG	ref_5209_RC	4	2	2	2	4	2	3	3	2	2
CGGGATTCTTGCCATT	ref_5209_RC	6	15	13	11	21	8	18	11	21	7
GCTACACAAATTGCAA	ref_5209_RC	66	111	72	89	109	67	107	75	112	59
TTCCATCGATGCGCTA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TGAAACTAAGTTATTA	ref_5209_RC	19	20	15	11	14	13	15	18	11	8
TAGTCAAATCCAGCGT	ref_5209_RC	6	14	7	3	13	8	11	4	4	9
GTATGTTAGTGCCAGG	ref_5209_RC	9	9	9	5	12	10	14	9	10	11
TAACACCGGTTGTGAT	ref_5209_RC	51	60	50	44	65	42	71	43	67	29
GCTTCGACAGTCAAAG	ref_5209_RC	14	16	15	10	26	14	16	14	22	18
GTATGGGTTTGTAACA	ref_5209_RC	28	45	42	33	54	24	38	19	38	19
GTATTATAATGCTTGA	ref_5209_RC	17	17	19	15	13	13	17	16	26	9
AGTCCCGTCCGATCGG	ref_5209_RC	61	49	32	33	55	28	44	23	29	36
ACCTGTCCCCCACAAC	ref_5209_RC	4	11	4	6	9	6	4	6	5	7
TAAATCGGGCTGAATG	ref_5209_RC	14	25	13	12	17	5	26	12	18	12
CCACCTATCTCCGGTA	ref_5209_RC	43	37	45	35	49	31	56	29	50	17
ACGTAGAGGCCCGAAA	ref_5209_RC	1	4	5	6	5	8	6	6	8	3
CGCACAGTTCGGTAAC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ACAACCAGGCGCTGGT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ACACTATCACGTCTTT	ref_5209_RC	33	56	49	26	73	23	59	30	66	36
TCCCCCTCAGAGCCTG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TGGCACTTCTTTTCGG	ref_5209_RC	13	25	18	15	5	6	15	5	27	10
CACGAGAGTTCGATAG	ref_5209_RC	0	3	2	0	0	1	1	1	4	0
CTGACCAGTAGTATCT	ref_5209_RC	10	13	14	13	31	9	13	13	31	9
GTGAGTGTTTTTTTTA	ref_5209_RC	31	49	34	40	46	23	46	33	49	29
TTGTTAGTAAGACAAT	ref_5209_RC	19	28	18	22	32	17	47	16	39	19
ATGTCCTTTGTATATA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TTTGACAACCTTATGT	ref_5209_RC	9	4	10	7	13	10	15	8	20	3
GTCCTGATTGTCGCGA	ref_5209_RC	19	25	17	25	27	20	24	20	29	15
AGTAGATGTGAGCCCC	ref_5209_RC	34	26	30	21	32	17	37	27	29	12
GATCGGAAGGGCTGCG	ref_5209_RC	31	30	26	17	30	37	22	28	27	21
CCTAGGGGACCGTGAT	ref_5209_RC	19	104	43	27	108	34	122	30	131	25
CGCGCGAATCCGTTAA	ref_5209_RC	4	10	6	4	15	7	2	8	10	5
GGAGTCGAGAATTTGA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
AGCCACCGCAAATTTG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CGGGCGGTCTAGGTAA	ref_5209_RC	6	4	2	4	4	7	4	1	8	5
TGAGCTCATCATTACA	ref_5209_RC	29	27	30	22	20	21	28	21	25	27
TTTTCTTGGTACAGTG	ref_5209_RC	13	16	15	7	10	8	18	16	20	12
ATCACACCTGTGTCGG	ref_5209_RC	15	24	7	14	17	9	24	7	23	10
TTGTTGTTGCCAGCTG	ref_5209_RC	4	4	4	6	1	8	10	5	5	3
AGAAGTATGAGCCGCC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TACTACGCCGGCATCG	ref_5209_RC	7	4	5	2	4	5	8	5	9	3
CCAGGGTCAAATTTCT	ref_5209_RC	42	52	66	54	50	54	53	46	63	31
CTAAAGTCAGGTCGAC	ref_5209_RC	26	22	21	23	23	28	27	14	30	19
CAATCGCTAGCATACA	ref_5209_RC	55	63	59	46	67	57	89	47	81	48
GATGCTTCAATTGTTC	ref_5209_RC	21	18	17	18	27	17	23	14	28	21
TCGCGCGACATCCGAT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CTCTTATGCCTGCTCC	ref_5209_RC	48	79	75	49	84	52	73	71	65	56
ATACGGCAGTGTACCA	ref_5209_RC	8	7	5	3	2	6	3	8	4	3
TACATATTTACCGTCA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
GGTAGTATCTCTTCTG	ref_5209_RC	11	21	21	18	29	16	14	18	19	15
CTATCGACACTGTTCA	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CAGACGTTTTCTAATG	ref_5209_RC	16	12	18	15	25	9	23	16	19	12
CTCCTTCGTCGTTCCA	ref_5209_RC	17	68	24	17	48	19	57	22	34	20
TGATATTTTAGGGCTC	ref_5209_RC	1	1	1	0	0	1	3	1	1	1
TGTTTCCTAAACGTTT	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
CAAAATCTATACTTTC	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
TCGCTGATTGGAGCCC	ref_5209_RC	11	29	21	12	24	22	26	16	24	13
TGTCCGCTGTAGCAGG	ref_5209_RC	24	31	20	20	35	19	30	31	26	18
TGATTCGACCCTAACG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ACCTAGTAGTACGGTG	ref_5209_RC	0	0	0	0	0	0	0	0	0	0
ACCGTGGTTCCGCTAA	ref_1269_reverse	17	16	16	17	40	16	33	18	34	17
GAATTATGCCCGTGAG	ref_1269_reverse	19	14	17	16	16	14	20	10	28	11
GGTTAGACACCAGGCA	ref_1269_reverse	53	86	71	56	69	54	95	49	68	57
TGCTGTGCGGCACTTT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TGACCGTGGTAAAATC	ref_1269_reverse	34	44	38	29	36	33	42	31	38	38
ATGACTTCTGTGCTGA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGTCTGAATACAC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCTGGTCTACGGT	ref_1269_reverse	18	33	25	28	44	18	37	18	47	17
GTCTTGATCGCTTCGG	ref_1269_reverse	1	0	1	3	3	0	2	2	3	2
TGGTTATCTGTATGTC	ref_1269_reverse	28	37	23	26	39	25	47	37	43	20
GATGCGCCCATAACCA	ref_1269_reverse	17	30	17	23	18	15	15	25	28	10
TTTAAATGACTAAGGC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCACCACGTGATA	ref_1269_reverse	6	20	7	8	18	7	20	11	13	23
TGTCATACGTTAAGCG	ref_1269_reverse	118	153	132	132	189	121	198	125	175	114
ACCCCCCCTGTTCCTG	ref_1269_reverse	2	37	3	6	40	6	38	7	57	4
GATCGATTGAGCGCGT	ref_1269_reverse	6	7	3	1	2	3	4	1	7	3
TCCCGCTTGAAAAGGC	ref_1269_reverse	32	34	25	27	43	23	49	34	41	19
TTTCAGGCGCATCGCT	ref_1269_reverse	6	10	11	7	10	5	16	6	15	8
TTGATCCGGTTATTTG	ref_1269_reverse	4	6	6	4	6	3	5	5	9	5
AATTCGAGCCAGCTCA	ref_1269_reverse	18	21	12	6	19	13	9	8	18	6
GCGGTTCGGATGATAC	ref_1269_reverse	51	199	76	59	226	51	211	48	196	45
CGCCTCCGTCGCTTAA	ref_1269_reverse	51	58	53	42	75	36	60	39	89	33
AAGAATTGGCCGGTCT	ref_1269_reverse	17	11	16	10	18	11	13	12	21	7
TGATCACACAGACTCA	ref_1269_reverse	26	28	36	32	33	20	34	28	29	21
AGAAGAATCTGCATGA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCAATTGCTCGCTCGG	ref_1269_reverse	15	11	9	12	15	10	18	6	11	14
TTTCCTTTCCAATTAA	ref_1269_reverse	2	8	16	8	6	10	5	3	9	5
ATAGAGATCCCATTTG	ref_1269_reverse	46	63	64	55	73	45	64	53	71	51
GCCCCGGCGTTCTCTA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTCTTTAGTGCAC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
ACTCAACATTGCATTG	ref_1269_reverse	8	22	9	14	18	10	19	9	16	10
AAAGGGCCTTGAGGTT	ref_1269_reverse	25	35	31	32	35	21	29	17	19	12
CAATCCCATTGCAACT	ref_1269_reverse	9	9	7	9	10	8	8	9	7	7
CCCGCACTTGTCATTA	ref_1269_reverse	3	13	6	6	11	5	15	4	18	5
TCTGGTGCTTGAACAA	ref_1269_reverse	8	2	12	11	14	6	10	10	11	4
CGTTCTCAAAATTAGG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTAACTCAATGCG	ref_1269_reverse	1	5	8	5	7	11	9	6	8	5
CAGGAGACAACTCTCT	ref_1269_reverse	14	29	24	19	31	14	20	17	28	13
CTTCCCAGGTTGTTTC	ref_1269_reverse	35	49	39	55	38	33	26	33	40	41
TAGAGGTTTTTATGTG	ref_1269_reverse	8	6	8	6	14	3	7	5	12	9
CATCGCTTGGGGTATT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCTAAGCCTGGGCTGG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTAACGGAAAGTCACA	ref_1269_reverse	43	63	62	45	62	40	65	64	88	56
GAGTTCAATGTCGGTG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGTTATTTTTTGATTT	ref_1269_reverse	15	29	17	16	12	13	13	18	22	16
CCGCCATTTCGATCCC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
AAACATTTTTCTATTG	ref_1269_reverse	20	28	26	20	32	18	28	15	38	16
CGCTTTGCTAGTCCAG	ref_1269_reverse	4	8	4	1	10	7	9	2	18	8
AACGTTCGCCCTTTGT	ref_1269_reverse	9	12	15	8	5	8	13	9	19	10
ATAATAAGTCTCTTTA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTAGCCGTCTAGG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGCTAATCGCCGTTGA	ref_1269_reverse	8	12	12	10	10	4	12	10	15	7
ACTCTTGTGAGTAGAA	ref_1269_reverse	15	11	16	7	13	13	15	17	19	18
GACATTCTTAATTTAA	ref_1269_reverse	64	83	82	72	118	68	94	57	102	52
TTGACTAGAATGGGAC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGCCCATCCTTAG	ref_1269_reverse	44	62	53	32	58	29	58	38	60	25
GATTACTCCACCGTAC	ref_1269_reverse	16	26	23	16	31	12	36	20	33	17
GCTTAATATGTTTAAG	alt_1269_reverse	78	99	93	74	108	81	79	93	128	69
GACTTTCAATTCTTAC	ref_1269_reverse	16	42	21	18	49	21	34	11	54	11
TGTATGTTTGCACTAA	ref_1269_reverse	0	3	0	0	0	0	0	0	0	0
CGTTGATAGCTGCTAT	ref_1269_reverse	16	13	4	16	14	13	16	15	22	2
TGCTAGCGTGGTTACT	ref_1269_reverse	42	83	58	56	67	58	72	50	83	47
AGGAGTCTTTTCGTGA	ref_1269_reverse	16	34	26	11	22	14	30	15	31	20
CAGATGCGTGGGATTT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
ACAATATGTTTATGAG	ref_1269_reverse	4	3	5	3	4	2	4	1	7	3
TCCATGGGAATATGTC	ref_1269_reverse	31	52	29	35	45	29	34	33	56	26
CCAGTCAGCTAGATTC	ref_1269_reverse	21	23	36	20	26	20	35	24	54	27
CATAGGGTAGACTTTT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GAACTCTGTGTGCTTA	ref_1269_reverse	13	11	22	13	29	20	13	13	20	4
ATAGCCAAGCCTCATG	ref_1269_reverse	1	1	1	0	1	1	2	2	2	0
GCTTCTGGTTTATCAA	ref_1269_reverse	40	48	33	29	41	30	48	26	45	20
TCCAGATGCAAATTTT	ref_1269_reverse	22	22	18	20	34	21	22	12	29	18
GGGCTACTAATTGTGA	ref_1269_reverse	227	290	305	252	280	222	321	211	332	197
GAGAGGATCACCGGTT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
ACATTGGGCCTTATTG	ref_1269_reverse	3	4	11	4	12	8	9	5	9	4
GCCAAACTCATGTGTG	ref_1269_reverse	69	87	85	67	129	75	125	74	128	57
GGCGTGAGCTCATTCA	ref_1269_reverse	19	32	29	16	38	30	28	30	43	16
TTGGGCCCCACAGCCT	ref_1269_reverse	15	12	26	14	23	7	21	15	24	13
ACTATGTCGGCCACTG	ref_1269_reverse	58	94	77	63	96	46	79	45	129	61
TTTTCCTCTGTACTCG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGGCAATGGCGCGACC	ref_1269_reverse	20	25	28	20	19	20	33	17	34	26
TCGTAGGTCTCATGCA	ref_1269_reverse	64	75	84	66	66	48	67	60	81	49
CAATTCTTCCTTATTA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCCCTCGAGTCCG	ref_1269_reverse	33	91	76	70	92	59	87	53	103	41
ATGTGAAAACATCCCG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGGTTGTGCGTGT	ref_1269_reverse	43	58	60	42	60	53	61	40	62	50
GGAATGGCCAGCTCAA	ref_1269_reverse	39	62	52	50	65	36	58	40	68	48
TATCCGGGTCTCATTG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
ATACCGTGACTCATAT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTCGTCGTGTCGC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGTTCTAGGGCCC	ref_1269_reverse	9	10	10	9	19	15	8	5	14	8
CTTATCTATCAAGGGA	ref_1269_reverse	19	26	20	16	17	14	32	18	20	11
TACGTTGATCGTTGGT	ref_1269_reverse	9	5	13	9	14	2	3	2	13	2
GTGCTGCGGGCGATGC	ref_1269_reverse	13	22	21	9	19	13	21	18	29	15
CATTCCTCTAGAACAG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTTGAGGGCGTCCCCC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCGGAACCCTATG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TACCCCCTTCTCCATT	ref_1269_reverse	2	10	1	2	9	2	3	3	7	3
GTTCGTGAACGATCTC	ref_1269_reverse	17	29	22	17	22	22	28	14	24	12
GCGTAGCTGTCCCGCT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCTAAAGTTCTTA	ref_1269_reverse	54	73	70	53	63	41	70	53	59	36
GATGAACCGTTTTCTT	ref_1269_reverse	128	141	167	118	162	124	137	117	150	119
CTAGTAACTCGAATAT	ref_1269_reverse	25	22	17	13	29	22	22	29	18	15
CACACCAGGTTAGGGT	ref_1269_reverse	0	0	3	1	0	0	2	3	5	0
ATCTAATTTCGTTGAC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTAATACTTTTGCGAT	ref_1269_reverse	40	60	36	49	31	29	41	24	60	32
TATTATTCATCAATTC	ref_1269_reverse	8	4	15	5	10	8	12	8	4	8
CAGACACTAATCTGAA	ref_1269_reverse	14	24	15	8	18	17	17	14	24	12
CTCATTAATCCCGCGG	ref_1269_reverse	59	61	62	49	78	61	74	57	81	42
ACTCTTACGTTCAGTG	ref_1269_reverse	10	18	10	9	8	8	16	8	15	5
GTTTTTCATGGGGGAC	ref_1269_reverse	14	22	32	25	43	23	34	24	33	24
GTTCCCCCGATCATTG	ref_1269_reverse	5	20	4	2	13	8	8	5	20	7
CACAAAGGGGGTAGTT	ref_1269_reverse	72	91	99	55	97	75	91	62	87	54
CCCTAAGCCCGGGCGT	ref_1269_reverse	6	18	9	6	23	11	30	10	40	9
GCGCCGAGCAAGGTCT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCCGGAGTCTCTT	ref_1269_reverse	36	41	31	44	46	32	44	20	50	21
CTGAGTTCCCGTGCTT	ref_1269_reverse	22	24	30	20	22	23	28	20	25	22
CTCCGTTCGGGATCTG	ref_1269_reverse	22	35	19	23	27	21	26	9	33	17
CAAGATGCACGACAGG	ref_1269_reverse	10	14	13	6	15	6	12	9	8	14
TGGGCCCTGCACAGTC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTCTTGTTGTTGC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCCTTCCCTCCTC	alt_1269_reverse	236	194	257	234	252	200	245	224	244	199
GGTTTATCTGGCAAAG	ref_1269_reverse	19	38	21	14	26	9	33	24	31	21
CTGCATTCACGCGCAT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTAACTATTCACTGTG	ref_1269_reverse	17	15	17	19	26	16	25	20	23	15
TGGGTGCTTCCGTGTG	ref_1269_reverse	8	12	11	7	20	5	11	6	6	7
CATATTTCGTATACTC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGTATTACTCTTTGGG	ref_1269_reverse	4	26	11	3	16	11	12	9	14	7
TTCAGCATTATGTCCA	ref_1269_reverse	39	60	50	44	77	47	79	40	94	34
GACAGAACGCATAATG	ref_1269_reverse	71	71	81	76	72	70	82	55	105	79
CCCAGTCGTATTCTCT	ref_1269_reverse	14	25	26	18	18	8	24	19	24	11
AGTTTAGGCGCAAGCT	ref_1269_reverse	12	15	20	9	13	8	33	14	22	7
TCTGAGCATTTATCAT	ref_1269_reverse	52	84	68	59	69	58	78	52	89	48
CTCTACGGCTTCTAGA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
AGGACCTATCGTGGAT	ref_1269_reverse	33	34	33	26	34	30	36	29	48	26
TGGTCCGAGCTCTGGC	ref_1269_reverse	22	38	26	31	23	21	42	21	29	17
ACCAATAAGGATAGAT	ref_1269_reverse	7	4	2	3	4	2	5	6	8	5
CCCTGGTTCTATGGGT	ref_1269_reverse	29	63	34	45	37	31	62	29	48	26
TCGGTTCCCCTTCAAG	ref_1269_reverse	4	6	1	2	2	4	3	2	4	3
CTATTAACGAAAAAAG	ref_1269_reverse	10	28	28	17	21	18	26	20	28	16
TTCAAGTAGAATACTC	ref_1269_reverse	7	8	9	2	9	5	6	8	6	4
CTCTTGAGGGAATCTC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTATCGTTCTGTA	alt_1269_reverse	20	26	34	24	27	19	27	30	21	16
CCTAGCTATATGTTAT	ref_1269_reverse	19	26	26	23	24	23	28	26	26	16
TAGGGGCCAGCTGCAC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
AACTCACTTGCACACG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TGTATCGTTGGAAGCT	ref_1269_reverse	1	3	3	3	3	2	6	1	2	2
TTTTCAAACCGGGAAA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTGACACCCAAG	ref_1269_reverse	7	17	14	12	14	4	20	12	17	9
CCACTTCACAGCGTGA	ref_1269_reverse	18	27	23	24	30	15	17	22	23	9
GGTAAGACTGTTGGAG	ref_1269_reverse	4	7	13	4	8	1	15	2	10	1
TTGCGTAACGGTAGTG	ref_1269_reverse	15	41	19	18	19	18	26	17	29	13
TCAGGCCGCAGCTTAC	ref_1269_reverse	2	8	8	5	5	6	14	3	10	1
TCATTGCTGTAAACTT	ref_1269_reverse	27	50	28	32	54	22	42	38	47	26
TTCACATCCAAATGAT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCTATTTTAGGTT	ref_1269_reverse	11	13	16	9	15	13	14	12	18	9
TTGGTCGTGTGTCCTG	ref_1269_reverse	5	5	2	2	7	2	5	3	5	1
CGTTGGGTTGCGCGTA	ref_1269_reverse	11	21	8	5	18	10	12	8	29	11
AGTGTGAGCACGCGAT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CACGCTTTTGGAGCGA	ref_1269_reverse	57	98	76	54	124	69	108	65	91	80
TGTTGGATCACGGCTT	ref_1269_reverse	16	26	20	23	18	13	22	2	13	9
GCAAGTTCATCGTTCC	ref_1269_reverse	18	32	26	31	30	32	44	26	33	33
TCTTTGTGGTCTCCGC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTCCAGCCCTGGG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TACTAGCATGTTAGGC	ref_1269_reverse	80	74	62	64	80	77	79	46	105	52
AACTATCCTGGGTCCG	alt_1269_reverse	56	87	88	71	94	67	84	60	130	50
AAGCAAACTGACTAGC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TATGTTGTACAGACAT	ref_1269_reverse	13	20	15	7	30	20	24	16	17	17
TGTGTTCGTTGGAGTA	ref_1269_reverse	1	2	1	2	0	1	2	2	0	0
CAGATATCATAAGATT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGACTTTCGGCCT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CCCAATCCCCATTTAA	ref_1269_reverse	9	5	12	9	13	11	12	8	10	7
CCGCCTCCTGGTCGTC	ref_1269_reverse	48	66	64	54	60	64	70	59	72	52
CTACCGCTTGTCTAGA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTCGAACTAATTGCCC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
AGTTAATTTCGCTTTC	ref_1269_reverse	25	35	45	27	23	33	51	24	37	27
GATTTCAAAGTATTCT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCCCATTCAATGTGAC	ref_1269_reverse	25	29	26	16	31	19	34	19	33	23
ACTGCAAGGGCTCCAC	ref_1269_reverse	53	40	53	43	51	43	55	25	53	40
GCTGCCGCACGTGCGC	ref_1269_reverse	20	13	22	16	22	15	20	15	23	17
CAGCTTCGTCGCCGTC	ref_1269_reverse	22	25	24	18	45	20	42	23	50	15
TACAATACGTCTACTG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGCTAGTTCGATGTGT	ref_1269_reverse	50	43	44	30	63	32	68	39	62	32
ACATACCTCTCGACGG	ref_1269_reverse	5	21	8	18	18	7	9	15	20	7
TAAGCGGGAAATGTTT	ref_1269_reverse	5	21	16	14	17	16	22	7	20	14
GGCCCTTCTTGGCAGA	ref_1269_reverse	7	4	4	5	5	4	7	3	2	10
TATTAAGTACAAAACG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGCTTATTTGTAC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTTTCTAGTCTGG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGAAGGCTGACGA	ref_1269_reverse	8	7	4	4	2	6	6	8	3	8
TTACACATTTCCGGTA	ref_1269_reverse	24	24	26	24	18	21	24	16	20	16
TCTTCGACCGGCTTCT	ref_1269_reverse	8	26	13	19	20	12	33	8	28	21
AGTTATTAGGCCCCTC	ref_1269_reverse	31	52	32	33	35	18	35	20	27	27
ACGTCTGTTGTTGTTA	ref_1269_reverse	42	70	62	53	53	38	56	38	42	31
CTTGTGTCTTCGTCAT	ref_1269_reverse	7	8	11	9	11	7	8	9	22	5
GGTCTCACTCGTGCGT	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGCGGCAATTTGTTAC	ref_1269_reverse	94	116	105	71	123	73	129	81	131	68
CCCCAGTGTGACCCAA	ref_1269_reverse	13	14	21	10	17	8	15	11	20	7
TCGTTTAATTTTTTCG	ref_1269_reverse	59	53	75	40	67	73	57	45	85	53
TTTGGGCCCAAGAGTC	ref_1269_reverse	23	28	30	16	29	15	21	24	35	21
ATATGTCCTCTATTGT	ref_1269_reverse	9	5	6	7	5	6	4	5	7	9
CCCGGGCTTTACTGTC	ref_1269_reverse	20	16	14	16	15	13	16	10	29	12
AACAGGGGTACCCGAC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CTATTGGGATAGGCAC	ref_1269_reverse	29	35	42	34	45	22	36	32	39	20
TATGTTCCTTCCTCAG	ref_1269_reverse	18	22	13	22	27	11	28	20	22	10
CGTCAGGGACGTATGC	ref_1269_reverse	11	15	19	15	25	16	24	13	30	16
CTGGGTGGTATCATCG	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGCCGCCGCGGCTTCT	ref_1269_reverse	12	15	9	9	19	10	31	15	19	8
ACACGCCCTCGGCGGC	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTTTATCTTCGA	ref_1269_reverse	37	40	37	50	56	31	59	28	68	36
CTGGACTTACGTATCC	ref_1269_reverse	40	63	41	47	55	44	59	41	63	35
CATGCAGTATTGGCAT	ref_1269_reverse	15	23	19	14	24	10	29	10	18	15
GTATGCCATGTCAGTG	alt_1269_reverse	167	238	194	200	246	170	238	155	282	165
ATATCCGTGATTTTGC	ref_1269_reverse	5	4	7	4	9	2	5	5	10	5
CCTATCTAGCTATTTA	ref_1269_reverse	0	0	0	0	0	0	0	0	0	0
TAAAGTGCCAATGGAT	ref_1269_reverse	24	24	28	24	29	29	34	17	39	25
CTATCTGGTGTACCTA	ref_1269_reverse	9	35	27	22	34	24	48	16	37	14
CGAAAATCGTTGTGAT	ref_1269_reverse	19	42	34	30	42	29	44	17	37	23
TCCCCTAAGCCCGTGC	ref_1269_reverse	10	20	15	6	20	12	26	11	20	13
GCAATCATGGCCGGCA	ref_3161_fdr	89	69	103	99	59	84	65	92	77	87
AGCCAAGGCCGATCCA	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCGTCTTAGCTTC	ref_3161_fdr	6	29	14	14	48	8	57	12	53	8
TTCGCGATTCGCGATC	ref_3161_fdr	27	25	36	27	27	34	20	36	35	22
GATCAATCAAGATGCG	ref_3161_fdr	3	4	6	5	3	5	6	7	1	5
AAAAAGCTTTTGTATG	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTTATTACGATAA	alt_3161_fdr	41	37	48	29	40	34	31	27	46	26
GCTCATCTATCGATAT	ref_3161_fdr	52	65	55	53	54	62	53	68	52	54
GCAGATCGATGACTCT	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
ACTAACTTATTTTCGG	ref_3161_fdr	48	23	41	38	29	47	39	30	35	40
TGTCGAACCACCTTCA	ref_3161_fdr	28	20	33	19	27	26	32	27	22	20
ACCCTTGCGCTAACGG	ref_3161_fdr	3	3	8	5	3	4	1	10	5	8
AAGTACTCTGGAGTTC	ref_3161_fdr	24	27	40	24	21	32	17	22	29	28
CAAGGTGACTCTAGGA	ref_3161_fdr	36	38	55	39	40	45	33	41	24	40
CGGTAACTCACGTTAG	ref_3161_fdr	32	26	23	25	35	31	26	27	21	26
TTAAGCTCCGATCTAT	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
TCGCATAATATACCGC	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
CGCGAATATGAGTCGT	ref_3161_fdr	129	115	138	115	98	114	134	122	117	102
CTAATTTCTGTCCTTT	ref_3161_fdr	12	10	14	9	14	5	10	13	13	17
GCACCTCACGTCCTTT	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
GATTACTGTCTCAGGG	ref_3161_fdr	77	69	90	46	53	62	74	65	51	56
CTTCTCGCTGCAACAG	ref_3161_fdr	10	8	9	4	10	4	7	6	9	6
CGAAACGCCGTGCAAA	ref_3161_fdr	96	83	123	100	103	93	102	90	78	104
TGTATTAAGGTGTTTT	ref_3161_fdr	188	178	215	159	176	168	172	159	163	153
CGTAATTATCGGGTGG	ref_3161_fdr	206	143	214	184	120	179	169	192	150	191
CTAGGACCCAGTTCTA	alt_3161_fdr	11	16	10	16	15	10	19	10	18	13
AATCTGTTCCAACTTC	ref_3161_fdr	90	85	107	76	76	84	78	96	81	95
GGTTTCTGCCGTCCAG	ref_3161_fdr	143	131	203	139	153	154	152	140	144	139
CTTAATTCTCTCGTGG	ref_3161_fdr	0	0	0	1	0	0	0	0	0	0
ACATTATTCAGCTCGA	ref_3161_fdr	124	106	142	126	116	110	107	89	92	108
ACCGCGGGGTCTTCCT	ref_3161_fdr	23	19	20	22	26	32	20	31	9	22
GCACCGTGACGATCAC	ref_3161_fdr	45	35	53	44	27	36	54	52	46	40
CACAATCGCAGATATG	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTAGCATGAAAT	ref_3161_fdr	76	81	103	91	65	68	78	69	69	55
GGATCGGCCAATGTCT	ref_3161_fdr	0	2	4	0	0	1	0	2	0	0
ATTTCATATTTATTTG	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGGTGGATCTCT	ref_3161_fdr	48	30	55	45	44	51	38	54	54	49
TCAGATGGAAGTGCTG	ref_3161_fdr	35	37	35	35	34	48	43	43	40	34
TCTGGTCTGAGAGCAT	ref_3161_fdr	38	42	61	30	44	34	32	30	43	39
GCGTTACATATCTGCC	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGTCTCCATCTTT	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
AGGAGAGAAGCAATAT	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
GAGAATAGGGCTCATC	ref_3161_fdr	5	8	15	6	12	14	13	6	5	12
TTTTATCATAAGTAAT	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
ATCTATAGGCCTGGCG	ref_3161_fdr	27	18	17	10	24	22	15	16	16	21
TCAGCATGTTCCAATA	ref_3161_fdr	101	117	130	95	122	110	130	106	147	89
TGTTATAGTCCTATGC	ref_3161_fdr	88	76	102	58	63	63	61	77	75	74
GCCTTGTCATCTTGCA	ref_3161_fdr	106	111	131	74	125	105	106	83	139	117
TATATTAAGCTCTATA	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTGGGTTGCTACG	ref_3161_fdr	33	28	34	25	40	22	29	34	36	32
CTTCACATCTAACTTT	ref_3161_fdr	28	25	27	33	23	40	27	19	18	31
GGTATTATGGTTTCCT	ref_3161_fdr	69	52	76	56	47	54	47	53	60	79
TAGTCGTTTTGTTTCG	ref_3161_fdr	6	2	4	4	10	3	1	6	3	7
TACTCCCAAACCTCAT	ref_3161_fdr	10	20	11	12	14	7	14	5	17	8
AGTCTACACAGTTGGC	ref_3161_fdr	5	2	3	4	5	2	0	4	3	3
TGAAACCTTGTTTTAA	ref_3161_fdr	13	4	12	15	7	18	5	3	12	6
GGCTCATGCGGTTGAC	ref_3161_fdr	55	46	69	55	48	59	41	47	55	44
GCGAGCCACGCCAGGC	alt_3161_fdr	52	54	107	63	65	56	62	76	56	50
TTGTTCCGTTGTGTAA	ref_3161_fdr	7	4	3	0	4	6	1	5	1	0
TCTTTCGTACCAATCG	ref_3161_fdr	19	15	19	21	19	23	17	21	17	12
CATGAGCATTATACAG	ref_3161_fdr	25	22	30	9	17	22	19	19	18	13
TGTTTTGAACAGTTCC	ref_3161_fdr	6	11	9	8	13	6	7	1	6	16
ACGTTTGCTACGCTGC	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTGCGTTTGGCAT	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
GAGCAGGCGGATTGTC	ref_3161_fdr	15	8	18	9	13	23	16	21	12	13
AAATCCCTTATTTCAC	ref_3161_fdr	54	41	64	40	32	47	46	56	47	31
TCGAGCGCAAAACCCT	ref_3161_fdr	14	27	24	15	8	21	24	19	13	19
TACCTCTCTGCGCGTG	ref_3161_fdr	4	17	6	2	10	5	17	3	21	3
CGTTTTAAGCACCTTA	ref_3161_fdr	5	3	1	3	5	1	3	7	3	5
ATACGACACGACGCTG	ref_3161_fdr	25	17	30	25	35	33	35	21	30	20
TTGGGCTTCATCTGCA	ref_3161_fdr	61	73	56	63	51	57	56	28	54	29
GTCCATGTTGGTGTTC	ref_3161_fdr	0	0	0	0	0	0	0	0	0	0
GTTATGCGGACCGCTG	ref_3161_fdr	20	21	43	47	32	24	26	25	38	30
CGTTGATTCTCACCGC	ref_3161_fdr	12	15	8	1	2	5	5	4	9	3
AAACGGCCAGTGCTGG	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCATAGGATATCG	ref_3161_fdr	42	37	58	47	36	28	37	46	30	39
TCGTAGTGCCAATCAA	ref_3161_fdr	48	24	38	35	19	52	25	27	26	33
CTGCCCTTGCTTGGTG	ref_3161_fdr	55	53	59	33	36	34	33	49	40	36
TTCATCCTATTCCTAC	ref_3161_fdr	89	90	90	94	97	91	103	76	95	91
GATTATCTCATCTGTT	ref_3161_fdr	86	77	74	63	71	88	68	94	66	76
CGTAAGCCGTAGTTAT	ref_3161_fdr	68	53	62	49	54	60	57	39	48	50
TTGAGTGTTGACCTTT	ref_3161_fdr	73	55	82	47	39	60	51	42	65	51
GTTTCAAGCGTTGAGA	ref_3161_fdr	20	13	15	10	5	15	14	8	16	16
TTCCCCATACTGGAGG	ref_3161_fdr	27	20	26	22	22	29	36	22	33	11
GTCAGAATTCACTACT	ref_3161_fdr	126	106	144	105	94	109	99	116	122	130
CGCTCTGCCCGCAACG	ref_3161_fdr	19	14	23	13	15	13	12	22	14	24
AATGGATTACGCTCTA	ref_3161_fdr	75	64	128	82	77	100	79	77	95	65
GTGGTATGCTCCTTGC	ref_3161_fdr	79	68	87	60	57	75	91	70	84	75
CTTTACCTGGGCCCGG	ref_3161_fdr	34	36	62	27	32	49	34	43	35	42
CGTCTTCCACAATTTT	ref_3161_fdr	10	15	5	10	6	13	6	5	8	6
GCACCTCCCCAGCTCC	ref_3161_fdr	34	27	33	27	19	22	26	22	16	29
ACGGTTCCACTCTTCC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GTGAACTACTGGCACA	alt_1433_fdr	58	70	100	72	49	66	56	58	50	60
CGATGTCCGACCATAC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CATGACGTGTTTAAGA	alt_1433_fdr	101	91	144	130	80	117	87	99	95	83
TCGTTTAGCCAACCTT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCGCACACTTTTT	alt_1433_fdr	4	3	6	5	6	9	6	4	3	3
TGAGAGTCCCTTTATG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GATGTTACGAAAACGT	alt_1433_fdr	11	10	16	12	9	6	9	12	12	11
GGTCCGACTATTGCCA	alt_1433_fdr	18	12	21	10	17	12	14	14	12	21
CTTACCAGGTCGAGTT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCGATTATGGCAG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAAAATAGAGTAG	alt_1433_fdr	89	64	119	77	92	78	85	85	72	71
CCCACACAAGGGTTCC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCCTGGCGATAT	alt_1433_fdr	66	68	88	60	63	71	76	83	73	63
GAATCCTCTTCGTAGT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGGCGTGAGTTAT	alt_1433_fdr	101	105	145	142	100	117	80	119	87	92
TTAATTGGTTCTGTTA	alt_1433_fdr	10	6	28	14	6	9	10	18	14	15
CTCTTGTACCGGCTTC	alt_1433_fdr	10	8	18	4	10	11	14	11	13	6
TCGGGGCGCTTTGTAC	alt_1433_fdr	45	52	54	49	40	33	40	36	34	35
CTAGGGGTAATTGGAC	alt_1433_fdr	0	1	1	4	5	2	4	3	7	2
GCCTTTCGCAACTTTG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CCGTACCTAGCAAATG	alt_1433_fdr	67	77	93	74	77	55	75	74	64	62
AAGTCAATTCTCGCTT	alt_1433_fdr	6	6	13	10	6	5	4	3	9	7
TCCTGGGGTAGAATTT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
AGATTCTACCCCGTGT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGTTACGACCCAA	alt_1433_fdr	44	39	90	72	48	63	78	52	40	45
TTGAGTATTCGTTTGT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCGACTCTTCTTT	ref_1433_fdr	41	40	31	31	22	34	31	31	29	44
CTCTTCATTTTTGGCT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGCATCTTGAAAATAT	alt_1433_fdr	114	116	156	131	109	109	113	127	108	102
GCCTTCATGGAGTAAC	alt_1433_fdr	30	38	45	33	32	36	36	45	30	21
CTGTTTACTGGGGACC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
AGGTATCTACTGCTGG	alt_1433_fdr	12	10	16	15	9	8	10	15	10	9
TTTTACTTGATTGTTC	alt_1433_fdr	28	22	35	33	37	17	17	31	33	38
TTCCAATCATCCGGTA	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCCCTTGGCCCA	alt_1433_fdr	41	21	38	35	19	36	46	28	36	29
GAACCTCAGCAGATTA	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GATTTTGTGCGAACCG	alt_1433_fdr	40	40	71	54	51	58	52	50	53	50
CTTTGTATTAGTAGGG	alt_1433_fdr	26	17	22	28	13	32	22	25	14	16
CATACAGTTTGTAACG	alt_1433_fdr	56	58	82	57	75	64	64	62	65	54
TGATGCTTGTGCCCGG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGTTTACCTAATT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTTAGGCCCTACT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CATTCAATCCTTATGC	alt_1433_fdr	38	30	31	19	27	23	26	23	24	17
GCCTTCTACTCTAGAA	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTGTTTCTCCATA	alt_1433_fdr	28	7	35	21	22	22	10	27	10	20
GGTTTCGGTGCATCTT	alt_1433_fdr	8	10	11	16	8	13	15	4	2	10
TTCGACTCGGCGCTAT	alt_1433_fdr	175	179	218	160	146	162	165	163	164	164
ATATAAAAAACTTGTC	alt_1433_fdr	26	8	33	22	13	21	16	27	25	18
GTGTTTAGATAACAGT	alt_1433_fdr	34	45	58	28	50	26	61	24	52	27
TCTTCTGGTCATGGGC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
AATAACCCCCCTGACA	alt_1433_fdr	8	8	9	2	10	13	11	8	16	13
TAGTCTCGCTAGCTAT	alt_1433_fdr	14	7	17	22	12	5	21	12	16	5
GCTAGTATACCCTTCC	alt_1433_fdr	6	13	9	1	8	2	10	6	13	4
TCGCCAAGCAAGGGTG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGGAGCGATGTAC	alt_1433_fdr	8	2	8	10	5	9	2	6	9	7
TTATTGTTATTTTTCT	alt_1433_fdr	155	120	200	152	87	163	127	133	137	139
GCTAGATTCTGTGGAC	alt_1433_fdr	61	52	52	53	57	57	51	34	55	44
AGCATCGTCCTACGCA	alt_1433_fdr	19	27	40	24	27	18	26	27	26	23
GAATTCGTAGCTCGAC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGTTCTGCTTCGC	alt_1433_fdr	16	9	20	15	9	9	15	8	15	9
ATTCATCATTTTTATT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCGTTGGAATGGT	alt_1433_fdr	55	50	71	56	54	46	41	56	57	64
TTAGTGTCCTCAGCAA	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGATCTGATTCAT	alt_1433_fdr	95	61	123	118	59	82	67	83	70	90
ACCGCTCCGTTTTAAG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
ACGCTCAGGTTAGCTT	alt_1433_fdr	10	8	8	11	13	2	2	7	9	7
TACTATGAGTCGTAGT	alt_1433_fdr	69	62	95	73	60	55	66	69	68	58
TGTGCGAACCAGATAC	alt_1433_fdr	66	42	66	67	43	39	41	48	62	45
TGGGATTCACAGATTA	alt_1433_fdr	23	22	31	19	27	9	27	30	22	21
TGCGTGTGTGCTATGT	alt_1433_fdr	24	25	23	29	24	30	22	25	37	24
AGCAATCCGGGAAATA	alt_1433_fdr	10	7	7	17	6	4	2	7	2	12
CTCTGTTTCTCAAGTG	alt_1433_fdr	165	119	193	156	113	136	150	146	153	127
CGCACTGCTATTTAAT	alt_1433_fdr	17	16	22	18	15	10	21	14	16	26
TACGCGAAACGTACTG	ref_1433_fdr	40	23	53	45	31	30	17	31	29	37
TTGGGGCGGTGCTTGT	alt_1433_fdr	14	7	23	30	21	19	22	12	14	18
CTCATAGTTTGTATAC	alt_1433_fdr	52	31	49	53	50	58	54	41	43	43
CTGATAGAACAGTTGA	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGATAGTCGTGATTTT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GTCATTTCGTGTGTCA	alt_1433_fdr	111	102	104	101	105	110	71	125	112	99
ATATTCTGACGTCGAA	alt_1433_fdr	62	50	64	59	59	51	63	53	58	46
ACCGCATGGTCTCTTT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGGATTACCTTTC	alt_1433_fdr	19	16	13	13	24	13	16	21	22	21
TCCACCTTTTTCCCGA	alt_1433_fdr	36	39	40	41	33	35	27	32	30	32
AGGGGTCTGGTACCGG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTCGAGGTTTGGG	alt_1433_fdr	3	9	1	6	10	3	8	6	3	6
GGAGTACGACTAGCCC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGGCTAATGGCCT	alt_1433_fdr	30	29	65	46	31	41	31	37	40	49
AATGAATAACCAGTAC	alt_1433_fdr	75	103	95	88	127	76	141	85	122	88
ATTTGACCATGTATTA	alt_1433_fdr	7	3	10	5	8	11	7	1	3	8
TGTAATCATAGTTCAA	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCGGGATCGCACT	alt_1433_fdr	25	15	33	26	18	26	25	26	22	27
GTAAATGCATTTCGTA	alt_1433_fdr	22	13	26	16	7	18	17	16	28	22
AATGCCCAGCGGACGC	alt_1433_fdr	28	21	41	35	17	38	32	29	34	32
TCGATAAAATGAGGAT	alt_1433_fdr	17	13	32	13	13	15	15	25	11	17
AGGTAAGGCCGATACC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GACAGTATACGGCGCA	alt_1433_fdr	40	25	42	36	32	25	21	23	36	23
ATCGGCCAGATTGTCG	alt_1433_fdr	61	60	59	41	47	51	51	50	44	57
CGGTTTTTCAAAGACA	alt_1433_fdr	43	41	66	27	34	29	32	32	41	38
ACTTTGGAAGTAGCAG	alt_1433_fdr	248	185	289	265	226	236	221	237	202	226
GTTATGGGAGTGCTAG	alt_1433_fdr	43	35	55	41	41	51	36	48	30	53
GTACGCTCACTGTCCT	alt_1433_fdr	21	31	18	17	20	18	31	16	12	14
ACACCACACTTTACCG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTATTTAGAGTT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTTACGGTCCACG	alt_1433_fdr	26	28	39	51	29	39	30	38	24	33
AGAAGTTCTCGAATAG	alt_1433_fdr	25	8	12	18	19	18	11	12	19	12
GGTACGGTCTAAATTC	alt_1433_fdr	37	57	54	52	37	48	34	48	50	39
TCGCGAAATGGAAGAT	alt_1433_fdr	36	31	43	41	25	21	26	31	33	32
CTGATGATTTTCTCTA	alt_461_fdr	124	51	139	116	72	114	84	123	94	109
CTTATTTGAATGTGGT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GATGGTATATTGTCGG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGACTCGGTGCTT	ref_1433_fdr	33	33	59	45	25	33	43	30	33	42
CTGGGCTTGCCGCTCC	ref_1433_fdr	90	72	123	89	78	101	106	104	83	82
CGAAGTATAAGGGCAT	ref_1433_fdr	60	41	84	60	45	55	43	50	47	43
CGAGTTCAACTTGCGG	alt_1433_fdr	69	47	92	78	77	90	61	78	65	81
ACAGGGCGGTATCTGA	alt_1433_fdr	22	23	27	26	20	18	15	27	16	9
CTACAATGGTGATGTG	alt_1433_fdr	57	54	63	62	59	48	35	57	61	58
CCTACATAGTTCATGC	alt_1433_fdr	27	65	32	21	65	18	67	28	70	20
GTGGACTGCCTTCTGA	alt_1433_fdr	10	12	12	6	7	6	11	7	11	15
GTACGTATTACCATCC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
ATCTAGTAACTTATAT	alt_1433_fdr	19	28	38	26	35	24	30	30	39	22
TTGTGATGATGAATTG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCAATCGATTACA	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
GCAACCGGATCGACCC	alt_1433_fdr	37	36	54	52	41	36	40	40	23	25
ATGTCACTTTTCCGGG	alt_1433_fdr	34	21	51	33	26	32	34	23	26	38
GAGCATTGATTGAATC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TAATATATTGACCAGC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAACAATATTGGC	alt_1433_fdr	5	5	5	3	8	5	5	5	2	6
GTTCCCTTGTCTAAAA	alt_1433_fdr	19	29	23	27	29	16	34	19	24	23
GCGTTGCCTCTGGTTG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGATCTTAGAGCATAT	alt_1433_fdr	3	8	13	9	6	6	5	4	4	14
CGGTTCGCACTACTAT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
AACATTGTGGTGAATT	alt_1433_fdr	28	17	18	21	22	8	17	22	23	21
CGATTCCCTTGGCATA	alt_1433_fdr	54	32	55	51	70	64	42	47	50	41
CGCTTCAACACCCCCC	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CCCGAATTCTCGTGTT	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
ATTAACTCCTAGATGC	alt_1433_fdr	19	21	22	19	19	21	20	18	16	14
GTATACGCTGGGTGGG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTGCGGTGTCTG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGCAGTTGCTCTG	alt_1433_fdr	0	0	0	0	0	0	0	0	0	0
TAGCCTGGGAGGGTCC	alt_1433_fdr	35	26	43	37	44	40	28	48	39	39
TAAAACTCTTCAGGAT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGTCCACCGGGTC	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTTTCACAGTCTT	alt_3022_reverse	209	66	259	243	60	210	64	192	80	165
GACCTCTTGTGTTTTT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
AGAACCTACATTACAA	alt_3022_reverse	61	19	76	73	23	65	27	62	26	55
GCGGACTCCGTTAACC	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
GAGGCAGCGTGCGGCA	alt_3022_reverse	79	20	88	66	26	69	21	89	21	71
AGATCGAATGGGCCAG	alt_3022_reverse	65	19	55	70	15	54	21	52	14	59
AGCGTCACTCAAGGCT	alt_3022_reverse	114	53	167	132	42	122	67	123	58	119
CACTATGGGCTTAATC	ref_3022_reverse	27	16	28	20	7	22	6	24	17	26
CAGCCAACTTTTTCAC	alt_3022_reverse	53	42	61	66	45	51	31	53	46	46
TGCTATATGTCAACCT	alt_3022_reverse	181	61	180	205	55	178	58	155	69	151
ACATTGTTTTTTAGCT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
TGTACGTCCCTAATCG	alt_3022_reverse	145	85	115	125	99	92	91	100	98	92
CGGACTATACTTATAC	alt_3022_reverse	174	92	220	169	109	178	85	174	89	160
CGACTGCCATACACTT	alt_3022_reverse	101	38	169	145	53	131	62	127	55	113
CTCATATCGTGTCTCC	alt_3022_reverse	259	91	331	284	87	250	103	240	84	274
AATTACACTGGACGTT	alt_3022_reverse	27	9	38	27	7	25	8	24	12	33
CTGTCTTCGCGAACAT	alt_3022_reverse	33	10	34	28	16	31	6	24	13	32
CAATCATATCGAAGTT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
CGGAATGGTTGTTGGT	alt_3022_reverse	35	29	49	41	41	31	35	35	28	29
TCACGGCAGGAGGAAC	alt_3022_reverse	203	67	273	213	81	207	63	207	76	169
GTTCATTTGGTCTTCT	alt_3022_reverse	128	38	152	141	45	131	31	99	35	86
AATTTGCTTCCGCAGG	alt_3022_reverse	129	25	136	145	45	111	61	131	39	132
CATCAGGGTTACATAT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
ATAACTAAACACGAGG	alt_3022_reverse	44	20	52	45	24	37	17	47	19	49
TAGCGCTCACGGTGAA	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
TGGAAACATTATGGCA	alt_3022_reverse	41	8	65	40	18	47	13	48	19	33
ATGCGTAGTCCAGCGT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
TCACCCTTTAAGGTGC	alt_3022_reverse	132	54	139	119	53	97	47	113	47	96
TATCTGGTTTAGAGGC	alt_3022_reverse	52	22	51	53	13	44	21	65	19	51
GAGAATGCATTGTTCA	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTGGCAAGCATCC	alt_3022_reverse	57	25	69	76	27	58	21	55	36	53
CTAGGCTCAGGCTCTA	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCCGTTGGAGGAT	alt_3022_reverse	45	21	69	71	38	65	21	40	13	55
CAGATTCTCTCTAGAA	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
TCATTGCCGCCCTTGA	alt_3022_reverse	126	37	138	129	42	125	51	143	58	122
TATCTTGATTTTTGCT	alt_3022_reverse	0	0	0	1	0	0	0	0	0	1
TGATGACTTGACTCAT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
GGTAAAGGCTAACGTT	alt_3022_reverse	479	179	605	535	149	514	173	510	174	461
AGAAACGGTCGTCTGA	alt_3022_reverse	76	82	110	113	76	73	90	97	84	76
AGTGTTAGATTGTAAG	alt_3022_reverse	155	72	180	157	60	121	57	137	82	151
CGGGCTATCCCAACAC	ref_3022_reverse	384	149	539	404	157	430	159	388	162	357
CTACCCTTAGAAGTCG	alt_3022_reverse	120	45	136	102	34	108	38	91	41	86
TGGAGCAATTTAGTTT	alt_3022_reverse	31	17	57	59	16	36	16	49	19	47
GGTACCTGACTAGAGG	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
AAGCGCACTAAGGGGT	ref_3022_reverse	156	63	222	184	64	156	52	181	54	165
TAAACTAAGTGAAAAG	alt_3022_reverse	12	5	9	13	2	13	8	9	3	7
AATCGCTAATTACTAT	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
GTATGTCTTCGCCGCT	alt_3022_reverse	96	40	158	96	49	88	57	97	56	89
AGACTAAATCTTTCAT	alt_3022_reverse	6	15	3	6	7	3	13	2	16	6
GCACCGGTCTCGAGCA	alt_3022_reverse	29	12	50	56	22	31	22	36	23	30
TAGCTTGATTTTTGCT	alt_3022_reverse	827	302	1064	861	380	694	371	744	352	701
CGGGAGGGAGCATTAT	alt_3022_reverse	178	69	222	156	85	180	83	178	86	188
TTGGCCCGTCCAACGG	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
GGACGCTCAGCATCCT	alt_3022_reverse	32	13	37	42	15	38	18	30	16	36
AGTGGCTTCTTTTGCT	alt_3022_reverse	183	49	267	181	83	200	58	190	66	195
ATCCATATGCCGCAAC	alt_3022_reverse	73	18	74	59	18	51	22	71	25	72
GATATCACCGCACCGC	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTGGTGGTTTCTA	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
AAACACTCACGGTTGA	alt_3022_reverse	130	31	134	119	42	96	47	106	29	117
CCTTCTCCAGGATGCC	alt_3022_reverse	57	10	55	62	22	48	20	40	19	43
TTTCATTAATCAGCGA	ref_3022_reverse	29	16	39	29	13	39	17	34	15	32
TGGCGAAGCTTGGAAC	alt_3022_reverse	481	195	607	554	234	472	199	533	210	464
CTGACATCCCCAGGCG	alt_3022_reverse	50	30	51	44	20	52	29	35	19	40
TTTGCCGCCTGTTTTT	alt_3022_reverse	131	48	193	145	44	138	57	101	49	110
AGCGGCAAAGCATGCA	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
AACCGAGATTCGCGCT	alt_3022_reverse	83	39	99	103	37	85	30	77	52	98
AACCGGTGCCCCGTTT	alt_3022_reverse	1	0	4	1	1	4	0	1	1	2
ATGGATAATCACCAGC	alt_3022_reverse	0	0	0	0	0	0	0	0	0	0
CCAAATTTTTGGCCAT	alt_3022_reverse	204	60	261	231	73	208	82	195	74	153
TTTTATCGAATACGCA	ref_3022_reverse	36	15	32	27	14	33	16	31	14	23
TTTGGGCCCGAGTGTT	alt_3022_reverse	40	16	63	36	24	43	16	50	18	42
TGGCCATCTTTATCGC	alt_3022_reverse	83	30	112	105	39	67	43	83	42	60
CAGTCGGTTTTGTAAC	ref_5831_new	15	26	7	9	31	11	21	11	15	6
TTGACGATTTGAGTTT	ref_5831_new	9	7	17	8	15	9	16	9	13	7
AATGTGAAACCTACTT	ref_5831_new	16	48	25	12	43	20	46	18	47	13
GTTCGTGGTAGTTACG	ref_5831_new	20	40	29	22	33	26	22	25	35	19
CTCATTAGATGCGTCC	ref_5831_new	0	0	0	0	0	0	0	0	0	0
AACACTTGCGTCTACC	ref_5831_new	16	12	15	17	25	24	18	7	11	9
TTCGGTTTCTAGTTTT	ref_5831_new	5	3	8	3	8	3	8	4	7	5
TCAGGCTTAGAGGAGA	ref_5831_new	0	0	0	0	0	0	0	0	0	0
TGTTCTTAGCGTACAT	ref_5831_new	4	13	3	3	16	6	6	12	7	6
CCCGATTACTTTCTTG	ref_5831_new	0	2	2	1	1	1	0	2	0	0
TCGTTCTCCTTGTTTT	ref_5831_new	0	0	0	0	0	0	0	0	0	0
ATTTACGCATGCGCTG	ref_5831_new	29	45	43	31	46	34	40	22	55	28
GATGTCTGTCATTGCC	ref_5831_new	35	45	43	44	45	40	63	36	46	38
AGCGGTTGACTCGTCC	ref_5831_new	27	44	31	21	39	26	44	22	48	25
TGCAACTACGTTTTAA	ref_5831_new	80	119	100	92	137	91	104	79	143	68
TCTACAAACCCGCCCC	ref_5831_new	0	0	0	0	0	0	0	0	0	0
GATCATTATTCATATT	ref_5831_new	12	10	8	8	11	6	9	5	13	2
AGTCGATTCATCGCAT	ref_5831_new	0	0	0	0	0	0	0	0	0	0
TTGCATAGCTATAGTG	ref_5831_new	0	0	0	0	0	0	0	0	0	0
CGCCCGGTTTTTCATT	ref_5831_new	6	17	18	23	20	13	23	13	18	16
CTCTCAGCCTAGATTT	ref_5831_new	8	19	7	13	9	15	15	20	11	6
CTCTTTCTTGTGCTTA	ref_5831_new	12	20	14	17	18	11	20	13	25	11
TGTCTGTTATCGCCTG	ref_5831_new	0	0	0	0	0	0	0	0	0	0
CCATTGTTTTGATAGA	ref_5831_new	9	11	8	5	16	5	12	5	13	10
GATAGCTTCTAATGAA	ref_5831_new	12	22	13	17	23	16	16	9	26	18
GATGAGTATCGGGGAA	ref_5831_new	1	0	0	1	0	0	1	0	0	0
CGCTCATATTCGCTCG	ref_5831_new	0	0	0	0	0	0	0	0	0	0
CGGTTATGCATTTTCC	ref_5831_new	0	0	0	0	0	0	0	0	0	0
TATGTGTTCAATATTC	ref_5831_new	55	102	63	56	76	55	82	59	78	49
ACGTCGCTCGTCAGTT	ref_5831_new	0	0	0	0	0	0	0	0	0	0
AGAAACGAACAGGGTG	ref_5831_new	0	0	0	0	0	0	0	0	0	0
GGACCGCATTTCTGCA	ref_5831_new	25	23	33	23	21	20	36	20	37	26
CACTTTTTTCTGTTCG	ref_5831_new	2	2	0	1	3	2	3	1	3	4
TTGGGCTCCTTCATGG	ref_5831_new	52	79	69	46	55	62	68	54	73	39
GATTGGGCGATCTTCT	ref_5831_new	0	0	0	0	0	0	0	0	0	0
TCTCATTAGCCCTCCA	ref_5831_new	0	0	0	0	0	0	0	0	0	0
CCATCCTTCGCGACAC	ref_5831_new	43	109	77	62	106	55	126	68	115	78
AATGTGTTTCCAGTCT	ref_5831_new	8	4	6	9	7	4	4	7	6	7
ACAACGGGCCTTTCTC	ref_5831_new	0	0	0	0	0	0	0	0	0	0
CAGATCAATTGCCGAA	ref_5831_new	20	23	21	12	25	13	25	20	29	19
AGTCGCTACTGAACGC	ref_5831_new	26	31	24	19	30	16	22	20	25	24
ACAGCGCCGCGTTACT	ref_5831_new	2	10	2	9	11	7	11	5	11	5
TATCAACTTGAGGGCG	ref_5831_new	34	77	44	30	64	40	43	39	80	36
CGTTCAGGAGTTTTGA	ref_5831_new	4	7	11	14	10	11	13	5	7	4
TTTTGGGCCTTGCTTC	alt_5831_new	0	0	0	0	0	0	0	0	0	0
ACTCCCCTTTAAGTAT	ref_5831_new	0	19	2	1	9	5	19	0	13	3
TCGAGTAGTCAATGAC	ref_5831_new	3	6	3	3	2	7	12	3	13	6
ACCCGGCAGGAGCAAT	ref_5831_new	0	0	0	0	0	0	0	0	0	0
TACAGTGCTACGGTTT	ref_5831_new	0	0	0	0	0	0	0	0	0	0
GATATCTCTAGAACAG	ref_5831_new	0	0	0	0	0	0	0	0	0	0
TTCTCCTAAGTTAGAA	ref_5831_new	0	0	0	0	0	0	0	0	0	0
TCTCGGTGCGTTGGCA	ref_5831_new	0	0	0	0	0	0	0	0	0	0
GGCCATTTTGAGATGC	ref_5831_new	30	80	40	38	72	40	68	31	64	34
TAATGGCGGGACTCTT	ref_5831_new	7	9	7	18	4	11	5	5	18	7
TATTCAGGTAACTTCA	ref_5831_new	0	0	0	0	0	0	0	0	0	0
GTTGGTACTGTATGAG	ref_5831_new	0	0	0	0	0	0	0	0	0	0
GACGATGCGTCGAAAA	ref_5831_new	5	3	4	6	4	4	4	4	8	8
TTTTAGTAAATTGGTC	ref_5831_new	7	16	5	10	8	8	13	9	11	10
CTTTGACTGGTCGCCG	ref_5831_new	6	17	12	14	28	19	17	11	20	13
TTATACGCACCGCAGG	ref_1026_negative	101	115	115	107	132	92	129	78	128	85
TGTCGTTTGACCCATT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GACTTGCATTGCTTGT	ref_1026_negative	16	8	8	7	9	12	8	9	20	6
ACCCTGCTTTTTGTTA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GTAGGTCTCTCAGTGT	ref_1026_negative	7	13	8	9	7	12	14	8	8	7
ACGCCCTATTTCTTAG	ref_1026_negative	8	8	9	17	24	16	14	5	11	8
TTCCTTTATAGCCAGC	ref_1026_negative	14	21	17	12	16	15	9	18	22	20
AGCATCCTTCCTTGGC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GCGGATAATACAAGCG	ref_1026_negative	40	43	66	49	60	38	59	35	60	40
CACTTTCAGCCTCATC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CCAGCGCCCCAATTGC	ref_1026_negative	9	27	19	22	22	13	21	11	24	24
GACTCCGTACGGTTCG	ref_1026_negative	91	115	118	107	122	79	132	91	126	70
AGAGATCCCCTCAAGT	ref_1026_negative	27	34	34	35	31	24	46	27	31	23
TCACCCGCTCAACAGC	ref_1026_negative	28	66	51	32	82	24	88	34	90	29
TGTCGTCTATTTAAGG	ref_1026_negative	12	7	16	8	5	11	5	5	8	9
AAATAACACTGCGCCC	ref_1026_negative	333	335	438	368	346	289	313	313	292	316
ATTCATTTGTGTTCAT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
TACTGTATGTCCGGCC	ref_1026_negative	35	39	47	48	47	41	34	37	33	39
TTGTAGTGAGCTTTGA	ref_1026_negative	29	24	35	40	25	28	38	18	32	35
ACTTGCGGGCGCGGAG	ref_1026_negative	114	136	170	149	149	155	147	127	166	135
AGCTAGGGTCGTAATT	ref_1026_negative	80	72	97	97	91	69	85	83	106	75
TCGTTTTACGCAAAGA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CGGCCTCCGTGACCTA	ref_1026_negative	44	73	67	48	52	43	81	67	63	66
TCGAGCGACGCCTATC	ref_1026_negative	31	44	56	44	43	39	52	33	62	36
CGACTTCGGGGCTCGC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GAGCGCAATTTGCACT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
AAACGCTTGAAATATC	ref_1026_negative	35	24	25	22	26	44	41	28	30	31
TCATGTCTTATGCCGA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
ATTACCTTTATCTGTA	ref_1026_negative	176	190	191	179	187	157	196	151	183	157
TTGTAAGTACGGTGAA	ref_1026_negative	79	89	81	85	56	76	78	52	102	65
GGTACCCGGTCTTGCT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GGTCTCTCGCTTGTTA	ref_1026_negative	53	48	56	44	44	40	37	20	47	24
TTGGTTCCAATATGCC	ref_1026_negative	31	46	38	45	39	28	46	28	47	29
CTTTACAGAACAGACT	ref_1026_negative	14	10	18	18	17	16	14	11	13	8
GTTGGATTCAAACGTA	ref_1026_negative	88	76	100	84	77	80	79	61	80	82
GATTATTTCATTTGCC	ref_1026_negative	31	42	36	35	33	37	33	38	34	30
TTCGCACCTATATCCC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
ATCTCACTACACATGG	ref_1026_negative	100	107	129	99	99	113	121	96	110	84
TCCACGTATTAATCCA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GTGGTGTAATATCTGC	ref_1026_negative	10	12	9	10	12	9	6	7	9	5
AAATCAATTTTCCTAT	ref_1026_negative	0	3	7	0	3	2	3	2	4	0
GCTTCTTTTTGTTTTC	ref_1026_negative	37	30	37	24	32	31	26	49	34	30
CGACCTGCGGTTCTAG	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
ATTTGTGGACCTCATG	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CTCGTTACAAGTTTGT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
TGATATGTTGGTAATT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GAGCGCTTATCTCTCA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
TCAGGGTATGTGAGCT	ref_1026_negative	123	164	138	140	151	141	169	95	150	117
CAAGCGGGTTGGCGAA	ref_1026_negative	29	23	28	26	29	23	24	22	22	24
TCATGTTTTCACATTT	ref_1026_negative	44	36	57	39	38	38	40	37	37	47
CAACTTGTATTGTGAA	ref_1026_negative	20	32	41	27	29	25	34	18	31	11
ATAGCCTTCTGTACCA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GTTATGGGTCAAGCTA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CGGAACGGTATTGCTG	ref_1026_negative	28	21	23	35	19	31	35	15	32	9
GGTGAACGGGATCGCA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CGGGTGTTTTGCCGAG	ref_1026_negative	19	29	37	25	39	30	16	24	34	32
TCTTGTTCCATTGCTC	ref_1026_negative	9	13	4	5	12	6	6	7	10	2
GTAATACGGTGACCCC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CGACTGGTTCAATCCT	ref_1026_negative	55	75	70	56	67	60	75	47	76	46
CTTGAAAACGGAGGTG	ref_1026_negative	21	23	32	23	32	21	19	18	27	38
GAGTTTGCTTACTTAG	ref_1026_negative	26	37	38	28	31	26	30	31	33	31
TATCCCTCAGCCGGCC	ref_1026_negative	111	135	131	118	139	106	133	129	137	101
ATGCGCCAGATATTCG	ref_1026_negative	80	75	95	64	89	62	67	60	93	47
TAGATCAGCAACTTGT	ref_1026_negative	26	12	42	30	27	13	17	31	22	19
GCACCTTTTCGCTTTA	ref_1026_negative	22	20	28	18	21	10	22	20	22	15
CCAGTCCGTCGCGACC	ref_1026_negative	65	94	74	55	89	53	103	55	100	66
TATTTCATCCGTCGCG	ref_1026_negative	54	50	64	55	66	70	64	62	73	46
TCTCTTCTTAATAAAC	ref_1026_negative	57	64	82	66	53	55	69	62	72	56
CTAGCCTCGTACTACT	ref_1026_negative	7	7	8	6	10	5	12	6	9	4
GGGCGCGCGCGTTACT	ref_1026_negative	14	18	18	16	18	18	20	17	19	11
TAATTATAGTCGCACG	alt_1026_negative	41	43	47	42	45	51	46	43	48	39
GATACTCATCCACTTG	alt_1026_negative	66	92	76	79	93	74	92	62	88	58
GGAGGGAAGCTTTTCA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
TAATTTGATAGCTTTA	ref_1026_negative	63	65	59	58	64	40	68	68	78	57
TTCCTCGTCATTATTA	ref_1026_negative	12	14	8	6	14	11	12	8	5	6
CACTATGGAATCGCCC	ref_1026_negative	33	41	39	39	22	33	41	30	42	24
ATAGGAATCGGTTCTT	ref_1026_negative	18	12	23	12	16	16	21	13	16	13
ATTCAGAATTTAAGGA	ref_1026_negative	141	180	213	125	132	140	158	124	190	133
TCGCAACTGTGTAGAT	ref_1026_negative	2	6	2	0	4	4	4	2	5	1
CTTTTGTCAGGAGTAT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CCAGTCCGTCGCGCCC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CTGACTTGTTAGTACT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CAGACTCAGTTTCTGT	ref_1026_negative	10	14	21	18	21	15	29	23	20	11
AGCTCCTTATGCCGGA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CCTTGTACCGGATGGC	ref_1026_negative	10	3	12	11	7	6	7	10	11	12
CTAACTGAGCCACTAC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
GTTTGCTTATCCTTCG	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CCACTCTACATATGAC	ref_1026_negative	10	20	15	19	22	14	16	24	22	17
GTGGATGACGCGCATG	ref_1026_negative	92	124	141	116	105	111	99	105	117	113
AAGAACCCGCTTGTGT	ref_1026_negative	1	3	2	4	1	2	2	2	3	1
GGCTCAGTAACATCTC	ref_1026_negative	29	40	43	27	45	33	32	30	45	27
TTTTATCTTATCTACG	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
TGGGTCCTTAGTAGCC	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
CGCACTTACGAGACTT	ref_1026_negative	54	90	94	47	92	72	80	75	117	87
GCTTCGATCCCTGTGA	ref_1026_negative	48	67	70	64	85	47	50	57	64	58
ACCCCAGGTCCCTGCT	ref_1026_negative	3	2	10	9	1	3	10	6	9	2
ATTAACACGTCCTGTC	ref_1026_negative	8	8	4	6	6	1	4	4	8	7
GCTCCTCAATTGCTAA	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
TATGAGGGGCTATACT	ref_1026_negative	104	128	122	89	112	94	122	80	110	79
ATCAACGCCGGCGATT	ref_1026_negative	0	0	0	0	0	0	0	0	0	0
TTGGGTCGACCTAGTG	alt_2011_RC	50	88	71	58	77	61	93	40	96	46
TTGCTCACTCGGGTAT	alt_2011_RC	108	118	130	113	116	116	114	94	116	97
AGCATCTCGGGAACCA	alt_2011_RC	6	4	10	8	6	7	13	1	4	1
CTCCTAACGAATTACG	alt_2011_RC	102	113	123	87	95	90	96	85	103	82
CAGCATCCTATTATAG	alt_2011_RC	7	24	20	22	22	14	22	5	23	18
TTCGTAAACACTAGCT	alt_2011_RC	2	3	9	5	5	6	4	3	7	3
CTCTTCCGGATGTTTT	alt_2011_RC	25	34	25	28	22	41	30	18	38	24
TCTGATTCGGGCTGAT	alt_2011_RC	0	1	2	1	0	3	0	2	2	0
GGGTGATTCTCACCAG	alt_2011_RC	16	26	33	27	27	19	21	21	5	21
GCTGGCAAGCCCTGCC	ref_2011_RC	162	217	201	234	229	178	257	194	256	160
TTCGATTGACTTCGCT	alt_2011_RC	27	33	32	15	35	35	55	17	40	25
CTACTTTTTTAGAAAA	alt_2011_RC	9	9	16	11	6	13	8	10	10	10
AATCGTAAGCTCGAAG	alt_2011_RC	9	15	24	11	13	13	20	22	14	18
CTTTTGCATTGGTTCA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TGACGACCTCTAGTGT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TTTTTACTTTTCTCAA	alt_2011_RC	39	32	48	41	36	42	35	38	48	33
GATGTGGACTTATATC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGCTCTATATATGACT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TGCTTTGACCACGCTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TTGATTAATACTCGCC	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCTGGCTTCTTG	alt_2011_RC	77	79	75	79	89	75	64	71	82	60
TAGATCCCATGGTACT	alt_2011_RC	69	62	71	69	76	59	72	48	59	55
GCGCCATACGCGATTT	alt_2011_RC	16	16	29	23	30	26	33	22	35	21
TAAAGTAAATATTCAC	ref_2011_RC	103	75	104	84	71	72	76	77	80	72
TCTTTGGGGGTGCTCC	alt_2011_RC	19	8	11	9	14	12	14	20	11	17
TCAACCGTGTGTGGCC	alt_2011_RC	4	7	10	10	5	11	9	2	18	8
AGCATTTTAGGTTAAT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GATCCTCCCCGACAGG	alt_2011_RC	1	7	1	1	6	1	2	0	1	3
CCTGGTAAATTAACAA	alt_2011_RC	39	26	31	26	31	34	35	27	40	32
ATTTTGGATTCACTAT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ACGGTCGTCACCGAAG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TGGGGCCATTGTCCGT	alt_2011_RC	332	398	416	364	387	380	427	324	427	331
AGCGGGCTCCCCGTTC	alt_2011_RC	0	4	1	2	7	1	0	0	8	2
CTTATTAGGTCGAAGC	alt_2011_RC	36	39	51	57	37	40	45	47	30	36
GACCCAAGACGTCTGC	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ATCGTCTTTACAACGC	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GGTAAACCTTTTTGCC	alt_2011_RC	8	6	3	3	9	5	8	11	5	10
CGTGTTAGGGCCCAGA	alt_2011_RC	9	1	9	7	8	4	7	3	5	4
CCAAGGAAAGTGATTT	ref_2011_RC	126	110	123	127	115	86	117	89	115	98
AATGAGTTTCTAAAGC	alt_2011_RC	2	5	8	2	2	7	6	6	7	2
TGAGACTTGACTGGTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ACTACCGCTATCCAAA	alt_2011_RC	75	98	110	101	132	87	123	83	138	68
TCCTGGGAGCGGTTTG	alt_2011_RC	20	23	19	23	19	14	28	18	32	10
TGTAGGTGCACCCAGG	alt_2011_RC	47	28	51	40	32	30	32	27	43	33
CACCACCTTTATGCTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TCGCTCACCAGTTGCG	alt_2011_RC	4	1	7	5	0	12	6	3	8	3
ATTGCCAGGTGGTTGT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ACGGCTAGACTTGTAC	alt_2011_RC	13	15	12	11	14	20	18	12	14	6
AGAGGGGAATAGAGGT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ATCAATTTGGCTTAAC	alt_2011_RC	31	23	26	25	29	27	27	27	36	27
TTTACCATTGGATTGC	alt_2011_RC	25	24	31	18	27	27	31	21	23	18
GGTATGAAAGCATTGT	alt_2011_RC	65	46	68	45	43	47	50	46	45	33
ACGGTTTACCGCCCCC	alt_2011_RC	66	50	71	55	57	51	59	75	59	53
GGGCCCTGAATTTCTT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GTCTACTTTGCAATGG	alt_2011_RC	107	116	142	114	136	104	135	126	128	110
AGATAACGACCCGCTG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ATTTAAGTAGCAGATA	alt_2011_RC	114	87	124	99	87	94	107	97	86	79
CTCTATAGTTTGATTC	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CTTGTCCGGCGCCAGA	alt_2011_RC	46	44	58	45	23	37	49	41	38	41
GATGAACCCCTTCGGC	alt_2011_RC	87	112	121	92	109	100	121	99	120	92
GAAGTCCTTGCGTATG	alt_2011_RC	25	15	17	18	8	17	9	17	23	15
CTCGTCCAATTGCACG	alt_2011_RC	72	86	100	67	114	64	99	74	117	67
TATGTTTCCTTTACGG	alt_2011_RC	26	28	37	19	28	34	39	33	26	30
CCGGACTCTTCGGGGG	alt_2011_RC	88	70	91	105	116	83	100	89	112	85
CGCCTCTGTTCCGCCT	alt_2011_RC	20	29	32	18	31	24	28	22	31	22
CTCAGACGCGACTATC	alt_2011_RC	77	89	109	86	110	71	76	69	116	71
TAAGTAGCATGCCGCG	alt_2011_RC	31	29	43	50	22	39	35	44	31	26
GTCCTTATGAGTCTTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GGAGCCCCCAGCCCGG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TTTTACAACTGAGTCC	alt_2011_RC	84	111	94	92	107	92	128	81	117	74
TTTCAATTTGTTCAAT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CGCTCCAATCTTTATC	alt_2011_RC	14	15	23	16	16	23	27	19	34	13
TGGTGAGTGATATTCT	alt_2011_RC	6	14	14	19	11	6	9	9	16	17
GCAATTGCTCAAAAAT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
AATGAGCCGGGTACTC	alt_2011_RC	31	23	26	14	24	24	20	19	15	18
CTAAACGGCATTACTT	alt_2011_RC	85	81	108	63	95	73	83	87	104	70
ATTCATTTCATTGCGT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GATGGTACGTTATCCG	alt_2011_RC	36	49	43	29	31	31	45	35	39	30
GGAGTGTTACCTGAGA	alt_2011_RC	28	39	43	37	24	42	45	30	28	34
TTTAAAGATCTCCGCC	alt_2011_RC	174	165	191	169	172	160	176	181	183	154
GTATTCTCCACACGTC	alt_2011_RC	50	56	55	56	56	47	67	37	54	47
TCTTACGTGTGGTGTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CCGACCGGGTTTTAGG	alt_2011_RC	17	22	43	10	31	18	32	15	28	16
ACAAGAGTTCAATATC	alt_2011_RC	24	25	23	21	29	16	30	24	29	11
CACCCATGTCAGCCGT	alt_2011_RC	17	15	27	16	16	21	14	17	23	16
CTAATAGACAAAGCTC	alt_2011_RC	96	92	115	123	81	70	78	84	68	78
CGTATCTTTTGCTAAC	alt_2011_RC	29	19	17	19	25	12	18	7	21	22
TCCTGAAAGTTGACGG	alt_2011_RC	15	16	22	21	20	21	17	27	21	18
TAAGGTTTGTGTGATT	alt_2011_RC	31	35	26	30	45	13	35	26	46	28
AGATGTACAGAAATTC	alt_2011_RC	21	17	19	15	24	14	22	24	15	13
GAACACGTGGGCATCC	alt_2011_RC	4	4	7	6	13	10	7	7	5	20
ATAGTTATAATAACCG	alt_2011_RC	28	24	30	28	34	33	26	23	24	24
CGTCGATCAATAATTC	alt_2011_RC	21	34	26	28	20	30	31	33	36	21
ACCTGGTACGTTCTCA	alt_2011_RC	99	153	101	75	119	82	136	76	152	96
CCTTTTGATCACTTTT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CTCCGGCGTGGTATCC	alt_2011_RC	41	47	48	61	68	58	54	34	52	46
AATGTAGAGCTTTCCT	alt_2011_RC	59	64	75	69	62	73	61	87	54	48
GTATTTTGCTCGATAA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TCATCAATACGCTCAT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TTGTCGTCTGGCGTCC	alt_2011_RC	6	7	5	3	1	6	8	3	5	2
GTAGAAAGTTTTTTTG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CGGATTCTTCGTTTCG	alt_2011_RC	80	64	105	88	70	66	80	75	52	67
GTAGCATTATGAAGAC	alt_2011_RC	20	10	14	14	13	9	7	10	17	11
TCCATAAGAATTGTCT	alt_2011_RC	4	5	5	5	2	4	2	0	4	2
CCTTACGGCCTGCACC	alt_2011_RC	1	8	3	3	6	1	10	1	8	0
TACTGCCTGATTATGC	alt_2011_RC	2	0	4	0	4	1	4	1	5	2
CTTTTTGTTATGTCAT	alt_2011_RC	60	53	61	52	83	54	83	69	53	60
TTTTTTCCCCCCACCG	alt_2011_RC	0	1	1	2	1	1	0	1	0	0
CCTCATTCTGCTGCTT	alt_2011_RC	67	89	80	70	75	76	94	66	80	67
TTGCTACATAGAGCCA	alt_2011_RC	16	16	14	19	15	10	6	4	7	10
TATTCAAAAACGGAAA	alt_2011_RC	62	69	81	87	68	69	66	46	80	53
CGCGCTCATCCCTTTG	alt_2011_RC	67	77	90	72	85	69	73	82	98	67
TCCGCCAGCCCAGCTG	alt_2011_RC	18	24	20	29	27	20	22	20	20	16
CCTTAGTAGCGTGTGG	alt_2011_RC	45	52	52	60	66	32	61	51	55	38
CAGTTAAGGGCGTAAG	alt_2011_RC	24	20	32	21	27	24	30	15	24	23
TCCCTCAATGGCGGAA	alt_2011_RC	27	64	44	49	52	35	62	46	67	46
TACTAAGAAAATTCTT	alt_2011_RC	103	96	143	111	86	111	136	80	114	82
TTTAGATACACATCCT	alt_2011_RC	14	9	14	16	16	11	15	19	32	16
ATCTGATGGAAAACCT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GGTGTATATAGCTTCC	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TCTAAAGTCCAAGTCG	alt_2011_RC	14	22	18	15	21	18	30	17	34	10
ATAAACGCGCACTCTC	alt_2011_RC	72	62	82	76	112	93	101	86	89	97
ACAGTCCGTCACTTTA	alt_2011_RC	31	23	41	25	25	25	33	29	43	22
CACCGCTACCATCTGT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CATTCACATCGGATTC	alt_2011_RC	36	47	42	42	43	39	41	33	52	39
TGGATACCTCAACATG	alt_2011_RC	42	35	47	40	42	46	44	23	52	34
GGCGGTGCGGTTGACG	ref_2011_RC	87	84	101	86	89	80	96	69	115	69
AGCCCTCTACCGGGCA	alt_2011_RC	117	139	162	139	139	94	134	100	147	110
CTGACTCCGCCGCAAG	alt_2011_RC	21	15	32	20	23	17	17	23	26	14
TCAGTGCTAGTCATTA	alt_2011_RC	26	22	16	22	23	12	19	11	29	20
TAGGGCGCCTCGCTGG	alt_2011_RC	45	47	60	56	41	40	40	52	48	52
TGTGTGAGTCACGTCT	alt_2011_RC	24	31	33	36	31	41	28	32	43	15
AGTGGAAGGAATACAG	alt_2011_RC	52	49	62	56	47	41	52	48	63	44
TCGAGGTGACTGTCGC	alt_2011_RC	19	23	32	20	21	16	23	18	21	18
ATCGGCTGTTGTTCCC	alt_2011_RC	74	121	104	73	121	80	102	81	117	72
GCTTTAAAGAGGCACA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ACTTGGTCGAGCTCTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TGTCGCAACGTAACAG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCTTCGTAAATC	alt_2011_RC	49	63	51	39	74	66	50	56	49	44
TTTTTAGCAATGAGAT	alt_2011_RC	13	10	7	10	12	5	5	15	16	13
TAGTTTCGAAGTTCAA	alt_2011_RC	40	35	27	23	31	33	33	41	41	18
CAGCCTGCTATTGGGA	alt_2011_RC	14	18	15	18	15	10	20	20	13	6
GCTGTTTCTAGGGAGG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ATCGGCTTCGCCTCTG	alt_2011_RC	34	25	45	39	31	24	29	21	36	28
GTGCAATGGTGTAAAC	alt_2011_RC	41	50	49	59	40	51	70	59	54	41
CTTCTGGGTTGCTAGT	alt_2011_RC	18	12	7	10	7	9	7	10	11	7
TGCGTACTTCACATTT	alt_2011_RC	42	42	57	36	56	40	52	33	66	40
GACGTACGGCGCATGC	alt_2011_RC	1	0	1	2	1	0	1	0	1	1
ATCTGCTTATTCATTG	alt_2011_RC	1	3	4	6	1	3	1	2	2	5
AGTTTGGGATCCGGTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TGAGCCAAAACCATGT	alt_2011_RC	47	75	81	67	69	61	89	71	75	65
TACTCCCAGCAGGATC	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TTGGTATAAGGGCTTT	alt_2011_RC	59	56	71	84	50	56	69	49	80	52
TAGTAAACAGAACCGC	alt_2011_RC	66	43	67	57	58	52	65	48	40	40
TCTACATCTCCGCCCG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
GACGCCGTAGCGCTAT	alt_2011_RC	131	145	165	139	126	120	147	111	139	104
GTCCCATCTCGCGGCC	alt_2011_RC	27	27	31	31	35	33	24	16	28	37
TGTACCGTATCAGATC	alt_2011_RC	20	18	28	22	32	24	23	20	22	20
CTTTAAACCGTTATAC	alt_2011_RC	8	28	13	13	13	14	25	11	17	10
GCATTCATGACCTTCA	alt_2011_RC	2	3	5	3	5	1	6	3	3	3
TAACAGCTGGTGATAC	alt_2011_RC	28	44	48	29	24	25	49	23	48	30
GGGCTTAGTCTCGGCT	alt_2011_RC	42	38	38	31	32	26	42	30	33	30
CATAATACAGACGATA	alt_2011_RC	139	129	211	146	121	130	174	133	148	133
TTTAGTGTAGCGTCTT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CAACTTAGGATTCATT	alt_2011_RC	41	80	51	64	88	45	83	60	88	50
CCGAGTGACTGACGAA	alt_2011_RC	46	40	57	32	49	44	43	36	57	32
GTCCCTCCTCGTTTCG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TTCGCTTAGGTTCAAT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
ACACGCAGTTCGGCCT	alt_2011_RC	14	17	18	22	11	23	22	19	10	18
TTCCCCTCCCGGAGCC	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CACTTCTAGGTCTCTA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
AGGGGCCTTGTTTTTG	alt_2011_RC	36	25	34	29	25	20	42	38	38	21
GTTTTGCGTTTTCTCA	alt_2011_RC	7	15	10	15	13	5	11	9	8	8
ACGACTCAGTTACCCA	alt_2011_RC	56	53	73	45	67	65	61	64	69	48
ATGTGCTTTTTGCGGA	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CTGTTGCTTGAATCAA	alt_2011_RC	19	27	28	27	27	25	30	19	37	19
GTCCCATATTGTTCTT	alt_2011_RC	1	5	1	3	7	1	2	2	3	4
TCCCAGTATTTTGAGT	alt_2011_RC	110	118	140	81	88	114	93	78	113	89
GCTATATAGGTTTCTC	alt_2011_RC	55	38	73	53	46	54	76	46	51	55
ATCTCTAACGGCGTCT	alt_2011_RC	110	95	110	115	114	94	66	78	96	96
GTATCTACGAATTATA	alt_2011_RC	42	43	56	50	51	31	38	45	34	36
GTCACCTGCCCCCATA	alt_2011_RC	31	35	31	34	41	27	37	23	42	27
TGGCCCCGGATTACAG	alt_2011_RC	36	33	41	46	34	35	32	31	33	28
ACATGCTGCTTCTGGT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGTAATGTCTAA	alt_2011_RC	25	27	24	25	18	22	22	31	29	17
GCACACATTTCGCATC	alt_2011_RC	28	16	21	17	28	24	27	30	33	21
ATCGTGCCGGTATCCT	alt_2011_RC	299	253	333	293	249	238	303	261	320	248
TTTAGCCGACAGATTT	ref_2011_RC	43	35	49	44	48	45	42	52	54	37
TGTACTCTTATATATG	alt_2011_RC	64	74	84	86	80	68	86	59	90	71
GGTGGCCGCGTCCCTG	alt_2011_RC	53	35	53	38	45	38	31	32	36	35
ATTGTGTTACGCAATA	alt_2011_RC	80	83	77	85	71	68	100	71	107	77
ATGGCGCCCTCGCGTT	alt_2011_RC	36	17	35	25	23	18	29	23	37	27
TATTCGCTATTGTAAG	alt_2011_RC	7	16	6	4	16	9	11	4	21	5
TGCCGGACGACCCTAA	alt_2011_RC	9	13	3	4	7	8	5	5	14	10
TGGCCAACCGAGGCAA	alt_2011_RC	19	30	37	38	24	27	42	31	27	28
TGCGAAACACATCGCG	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
TTTTAGTTGTTGAGAT	ref_2011_RC	43	51	78	49	62	44	48	42	50	42
CTCTTTAGTACAAAGG	alt_2011_RC	16	18	10	16	10	5	9	15	23	11
ACCACTCTCACACCAT	alt_2011_RC	78	69	82	65	89	57	86	66	88	71
TACACGGTAGACCACC	alt_2011_RC	13	21	25	16	29	14	19	14	17	12
GATCATGACGAGGCGC	alt_2011_RC	8	12	9	14	18	17	12	14	21	9
CCATGCCTTATGAGGA	alt_2011_RC	15	33	16	18	24	11	33	8	42	16
TCAGAATCTCCACAAC	alt_2011_RC	143	161	202	161	176	148	184	148	154	162
TTGCTGTTGTGGTCAT	alt_2011_RC	0	0	0	0	0	0	0	0	0	0
CAATGGACGAAATTAG	alt_2011_RC	37	40	37	39	39	24	22	19	23	26
GACCCGGTAGAAAAAG	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
CATTATACGCTGTTGC	alt_3643_upstream	13	25	15	15	22	15	30	10	33	20
GTTTGGCAGAACCCAA	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
AGACTTTTCTCTATTT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
AAAACGCTCATGGGAT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTGTTCCGACAC	alt_3643_upstream	8	14	12	5	9	3	21	12	14	14
TTCTTTCTGCGCACCT	alt_3643_upstream	13	14	24	20	16	9	17	23	28	18
TCGGTTCATCCTCTGA	alt_3643_upstream	8	15	12	12	16	5	9	7	5	2
CCCATTTTGCATACTT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCTTGTCGCTATC	alt_3643_upstream	18	48	31	27	36	24	54	39	38	19
GTAGCCCCAGCCTCCC	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTTTGATACCGT	alt_3643_upstream	16	21	26	23	25	14	24	19	27	14
TGCCCTGCTTTGTGTG	alt_3643_upstream	11	18	16	19	14	15	24	13	12	12
ATTTTGGTGTCGTATT	alt_3643_upstream	4	2	6	8	3	3	7	2	5	3
TATCATATCTACCATC	alt_3643_upstream	22	19	28	11	20	10	17	22	18	13
TTTATTCTGCTCTCTT	alt_3643_upstream	63	55	67	75	51	40	64	56	71	50
CGGGCTGTTTTTAGAG	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
CACGTACTGGGGATTC	alt_3643_upstream	68	79	85	90	100	51	110	77	84	57
GGCTTCTACCGCCTCA	alt_3643_upstream	74	101	100	89	102	78	108	71	101	73
TTAGTTTGTCACCTAG	alt_3643_upstream	12	20	17	7	21	15	14	16	27	15
TATGCAAACTTTCAAC	alt_3643_upstream	15	16	17	12	21	12	21	15	23	13
CTATGTTCGCCGATTG	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCGGAGGGCGGTC	alt_3643_upstream	175	215	193	192	225	172	194	179	247	177
GACCTGTTTTTTCGAG	alt_3643_upstream	17	18	20	14	32	16	22	12	25	15
CTCAATATTTTCTGGC	alt_3643_upstream	13	20	15	15	20	15	15	15	30	8
GTCTCCGCGCTATGGA	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGGCAAATTTATG	alt_3643_upstream	6	2	10	3	7	4	11	0	6	5
TTTCGAGTTCTGCCGG	alt_3643_upstream	51	49	68	56	66	43	58	51	64	37
AGCTCACGTCCTTCAG	alt_3643_upstream	18	8	15	11	18	9	5	13	11	8
TATTTGTACAACTATC	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGGCCCACACTCG	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTGTACGAAGCATGCC	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTTTAAACAAAATCCT	alt_3643_upstream	30	30	31	21	33	32	39	31	34	20
GGCAATTTCCACGAAG	alt_3643_upstream	50	49	57	40	37	37	58	47	52	41
GTTGTATTAAACTTGG	alt_3643_upstream	41	53	49	33	38	42	48	39	51	42
GTTAGTTCCCAAATTA	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCGAGCTACTTTT	alt_3643_upstream	185	267	242	215	260	174	251	217	271	157
GGTTATTGTGGACTCT	alt_3643_upstream	20	39	31	37	48	25	27	23	46	37
CTGTAGCAACTGTGGC	alt_3643_upstream	16	24	27	26	34	20	29	20	36	7
CGTCCAATGCATTCTT	alt_3643_upstream	32	35	52	30	47	40	56	29	62	29
GTCATGTTACAACCTT	alt_3643_upstream	32	58	37	25	50	37	46	32	46	32
CAAGTTTATTGAGTCT	alt_3643_upstream	2	4	8	4	5	6	7	7	8	5
CCTGACGAGTGTAGTG	alt_3643_upstream	19	25	24	12	22	11	16	17	26	22
TACCATCAAACTGTCC	alt_3643_upstream	18	43	23	32	39	28	45	18	32	30
AACTTTAGATGGCCAC	alt_3643_upstream	54	38	52	35	24	41	33	30	37	29
GAATGAGTCTATGATG	alt_3643_upstream	12	17	11	15	12	9	10	13	30	7
CTTCCTGTTAATTTTT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GTTGATCGGCCTTGGA	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATTGGTAAGGGC	alt_3643_upstream	1	4	3	8	1	1	7	4	7	3
GTGTTGCACAGGTCAC	alt_3643_upstream	59	89	71	53	63	42	63	46	87	56
GGACGCGATCTGTGGC	alt_3643_upstream	67	83	94	61	86	67	82	66	87	65
TTTGGCTTTCGAGTCA	alt_3643_upstream	7	10	12	11	9	9	6	14	13	8
ATCACTCATCACTCTT	alt_3643_upstream	5	6	9	9	9	5	6	3	9	5
TTTTGTATACGTGCGT	alt_3643_upstream	32	38	26	29	39	24	41	25	41	27
AGCTCGATGTTATGTT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTTAGATGCTGT	alt_3643_upstream	132	155	189	159	161	120	196	147	164	110
AGTCCCGTCGTAATAT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
CAAACAAATCGGGTTA	alt_3643_upstream	6	3	12	4	13	6	4	5	6	4
GTAGCCCCAGCCTCCA	alt_3643_upstream	167	158	246	194	184	157	197	172	178	182
GTCTTAGGTCCCTAGC	alt_3643_upstream	8	17	20	8	16	14	5	11	15	13
GAGCTTCTTCTTTTAC	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TAACTTATTGATGTTC	alt_3643_upstream	20	5	10	11	9	7	7	8	14	5
TACACGGGATAACACT	alt_3643_upstream	5	5	4	9	19	4	13	10	10	5
TCACCTGATACCCCAA	alt_3643_upstream	59	78	63	57	73	34	81	49	72	44
TCTCGTTGCTACTTCG	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTTAGCCTGACTT	alt_3643_upstream	20	40	24	21	26	15	24	32	31	9
ATATGCCTGAAGATAT	alt_3643_upstream	25	25	25	14	21	17	26	15	35	12
ACCGTGGGATTTTATG	alt_3643_upstream	75	86	99	77	110	82	105	65	86	67
TCGGTTTGTTTTTTCG	alt_3643_upstream	124	101	126	147	111	107	90	104	93	103
GCGCCTACACAATTGT	alt_3643_upstream	28	28	21	36	29	17	34	33	47	24
ATGTCTCTGTTGTTTC	alt_3643_upstream	71	63	83	84	66	72	56	72	68	51
AGTACAAGCATACAGT	alt_3643_upstream	25	44	28	25	29	22	26	24	35	33
GCCGATGTTGTATGGG	alt_3643_upstream	6	15	11	12	17	10	16	12	15	9
GTAGATAATGTTTTAC	alt_3643_upstream	1	3	15	4	2	3	8	3	6	5
TACGGTCTTTCATGTA	alt_3643_upstream	17	17	25	20	22	17	25	24	24	9
GGGATCGTTCACTAAT	alt_3643_upstream	32	35	40	17	46	30	29	25	46	23
TCTTTAGCGTTCCGTT	alt_3643_upstream	9	13	9	14	20	12	21	15	29	7
CTTTACACCCGCCGAT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGCGGTTCACGAT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GCTACAGTTTCGACGG	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCATACATTTGAG	alt_3643_upstream	3	2	1	3	1	1	1	1	1	4
CAGATCCTCATTCTTT	alt_3643_upstream	3	5	4	4	7	4	8	3	6	4
CTTCTGCGTCTATCTT	alt_3643_upstream	2	1	2	3	3	5	5	7	7	4
CTTACACCTACCGGGC	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
GACAGGGTATAGAAGT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TCAAACTCCTCCGGCG	alt_3643_upstream	16	15	22	13	26	4	22	22	17	6
ACGGAGATGTAGACAG	alt_3643_upstream	112	128	116	108	138	109	121	108	131	105
TCTCCTGTGGGCGGTA	alt_3643_upstream	30	34	22	23	25	30	36	33	31	40
TTAAACTGTGCGTTCC	alt_3643_upstream	2	11	9	7	13	12	12	5	14	4
ATACTGAGGCGTTTAG	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCCTATGGCTCGA	alt_3643_upstream	20	16	9	13	23	15	18	15	27	13
GCATTTAGATTTTAGG	alt_3643_upstream	35	55	52	26	41	41	48	38	65	48
CGCTATGTTAAGTTTT	alt_3643_upstream	20	27	24	20	36	30	35	14	27	11
TAAAGGAACGGTTATT	alt_3643_upstream	29	28	37	35	21	28	32	23	33	17
CGTGTCTGGCTTATGT	alt_3643_upstream	40	49	49	58	56	48	65	38	64	43
GGTTCATCTACTGGAT	alt_3643_upstream	175	179	210	167	229	162	198	157	262	145
CGCACTTCTCTCCTAG	alt_3643_upstream	78	105	61	81	78	59	81	55	83	49
TCACTGTTGGCACGTG	alt_3643_upstream	28	44	28	23	34	19	30	21	35	15
GTTGACCCCCCTTTTG	alt_3643_upstream	45	65	69	65	73	61	70	56	88	52
TTCTTCTTCTAGAACA	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGTGAGTATAACC	alt_3643_upstream	12	15	12	15	5	10	19	10	16	7
CCATGTGCCAACCTTT	alt_3643_upstream	40	65	39	42	62	34	69	28	65	38
GTGGGAGGGACTACTA	alt_3643_upstream	15	11	15	8	12	14	18	3	15	16
GGTTATATGCTCGAAA	alt_3643_upstream	15	18	20	20	19	22	29	12	13	16
CACCTTCCGTCTAAAT	alt_3643_upstream	21	54	39	31	43	23	43	24	40	17
TTGGCTGTCGGACTAC	alt_3643_upstream	59	83	99	80	99	71	98	89	108	67
GTATTCGTGTGTAGAT	alt_3643_upstream	33	30	44	37	44	30	39	40	41	36
GGGCCGGAGTTGTTTC	alt_3643_upstream	52	46	65	54	71	49	64	62	69	43
TAAAACAAGGAAGGTT	alt_3643_upstream	67	85	100	75	90	59	102	70	84	58
CCAATAGGTTAGCAGC	alt_3643_upstream	25	27	26	29	40	33	34	24	38	21
AGCTTCTGAGGCTCTT	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
CGATTAGAATATTTGC	alt_3643_upstream	34	43	46	19	38	31	56	31	53	28
TCTGACGCCTTCTTTG	alt_3643_upstream	54	115	53	63	112	52	101	61	124	53
ATCTGCGAGATCGGGC	alt_3643_upstream	41	62	61	68	74	42	61	49	65	46
TGGGCCGTTTACCTCC	alt_3643_upstream	0	0	0	0	0	0	0	0	0	0
TTAAAGGTTGGTACAA	alt_3643_upstream	5	13	10	4	8	5	11	9	13	7
TTTCCATTATACATGC	ref_455_upstream	48	60	75	72	61	63	68	46	80	63
TTAACCGGTGGTGCTA	ref_455_upstream	43	43	59	48	42	50	47	50	33	32
ATTTGAATTCAGGGCC	ref_455_upstream	35	37	48	26	28	24	26	32	41	27
ACAGCACTGCCTCTAC	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
ACCTAAGTAAGTAGAG	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
GCCGAGATATATTGGC	ref_455_upstream	37	24	48	37	42	21	28	32	40	32
GTCTGCCTCGGTTCAT	ref_455_upstream	30	27	26	31	15	26	27	28	29	18
TACGGCATTACACGCA	ref_455_upstream	16	15	21	10	15	16	14	16	14	16
ACATGCGGAACGAAGA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGAATGTGCGCTA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTTTTTTTTTGGG	ref_455_upstream	0	1	1	2	1	0	0	3	0	0
AAACTCCCAGGCGATC	ref_455_upstream	82	117	78	84	82	67	98	71	131	77
TGGTTTTTTTTTGGGC	ref_455_upstream	236	263	292	267	287	273	264	285	302	216
TCTCCGATCAACTCGC	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
CACCGATTGATCCTAA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTGTACGTGCCGG	ref_455_upstream	137	115	184	137	171	139	157	146	150	106
CGATTCACTTTATCTA	ref_455_upstream	16	19	19	10	16	19	11	14	9	12
ACTCTTAAACGTTGGG	ref_455_upstream	20	13	12	5	10	12	19	9	13	12
CAAAGGATTCCTACTG	ref_455_upstream	15	5	6	8	9	7	8	9	7	8
GTTAGAGTGTCATCGC	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
CTGAATTTCTTTTGTG	ref_455_upstream	53	56	59	65	68	86	58	62	66	49
TTTCCCTAGTCACAAG	ref_455_upstream	8	9	9	7	9	8	8	6	10	10
TGTTTTCATTTGCCCA	ref_455_upstream	61	55	67	65	56	58	54	59	70	57
CCCCTCAGAACGTACT	ref_455_upstream	57	62	65	60	84	71	63	33	67	49
TGAGCATTGTCAGCTC	ref_455_upstream	72	82	70	72	72	78	82	57	87	49
ACGCACCGACCATAAG	ref_455_upstream	61	86	94	73	81	63	81	66	75	64
TCATTTTTTACTGTTT	ref_455_upstream	98	54	118	93	53	93	94	84	94	88
CCCCCCGTCAGGCTCG	ref_455_upstream	0	6	0	4	2	0	2	0	2	0
TACGGGGTTTCATCGG	ref_455_upstream	0	0	0	0	0	0	0	1	0	0
TACCAGAGCACAACTT	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
GACATCCGTTGATCAG	ref_455_upstream	21	21	24	23	14	17	16	18	25	18
ATTGGTAGTAATTCAG	ref_455_upstream	34	31	45	42	33	34	39	42	54	44
TTAGGGCTGACGAGGC	ref_455_upstream	14	20	24	16	15	13	12	15	23	12
AGTGGTAACTTATATT	ref_455_upstream	53	66	65	54	46	61	59	49	47	55
TTTATACGCGTGATTC	ref_455_upstream	16	21	33	25	17	28	21	38	25	21
GATGATGGTGTTTGCC	ref_455_upstream	28	39	45	48	31	41	32	35	41	35
CGACTCTCGACTGTTC	ref_455_upstream	12	100	37	20	98	25	91	19	107	23
AGTCGCTCGCAGCTGA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
CAACTCAGTCACTTGA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCTTTGACAAGGG	ref_455_upstream	33	50	64	49	49	48	40	37	47	37
TTATGGTAGCACCTAC	ref_455_upstream	2	13	5	5	19	2	22	1	18	3
CCTCATTTGTGTTTTA	ref_455_upstream	55	77	79	58	82	61	73	57	110	66
CGATAGAAGTCGGTGG	ref_455_upstream	63	43	66	50	54	64	45	40	60	54
TTCAATCGTGATCTTG	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAACCTTCCAATG	ref_455_upstream	8	19	12	6	39	13	27	6	22	11
TTGTGCCCTCGCAATA	ref_455_upstream	9	8	6	5	5	6	5	6	10	8
ACGCCCTAGATATCGC	ref_455_upstream	8	11	7	4	15	5	6	7	10	7
TGGTTTTTTTTGGGCC	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTACTTTTCTCTC	ref_455_upstream	179	175	208	179	195	175	189	165	213	167
AATTTTTACTTGCCTC	ref_455_upstream	70	49	79	90	48	66	42	62	50	55
AGCTGGATGCCGACGT	ref_455_upstream	23	15	40	36	24	28	18	28	26	26
AATAGCTTCCCCATGT	ref_455_upstream	50	64	65	61	57	57	61	48	53	46
TTTAGACTTGGCCCGG	ref_455_upstream	41	24	29	29	30	22	23	31	20	24
GTGTACTCAAGCTATA	ref_455_upstream	15	17	18	22	18	19	26	12	32	13
ATCGTTTCGGGCGTGA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCACGTGGTTCGA	ref_455_upstream	3	4	1	0	1	5	4	3	3	0
AGCTTCGATTATTCAG	ref_455_upstream	2	6	4	12	8	1	4	4	11	18
CCGGGCGCTGTTGCAG	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTTATTAAGAGTC	ref_455_upstream	7	13	11	10	16	9	10	11	5	7
CTCAAGTACATCTACA	ref_455_upstream	37	53	28	26	43	32	63	31	47	24
CTGGTTACAATAAAAG	ref_455_upstream	181	160	223	189	155	149	176	170	176	137
CTGCTATTGCTGTTAA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
TGGATTGAGCAATGAT	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTATCTCTTCTA	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGAGCGCCGGTCT	ref_455_upstream	0	0	0	0	0	0	0	0	0	0
TCACTCTTGCCACTTC	ref_2632_upstream	97	92	115	101	74	69	104	87	101	100
CTGATTGTTAAGGTAA	ref_2632_upstream	19	27	21	25	19	16	16	10	30	20
CCAGGTCGACTTGTAG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTCATGGTGTAAG	ref_2632_upstream	28	20	27	24	21	24	16	23	16	12
GAGCCCGCTGTTTCTG	ref_2632_upstream	27	36	46	43	26	31	39	40	28	27
AGATCTTAGCCCGTTT	ref_2632_upstream	147	103	160	173	127	144	123	153	117	133
CCGCTTATTATACGTC	ref_2632_upstream	82	108	100	99	106	82	105	80	101	77
CAAACCTTGGTGAGTC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TAGACTAAGTGCTTAA	ref_2632_upstream	10	6	22	12	19	17	20	10	15	12
AAAGCGGCGTTCCGCG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCCCCACCCGATG	ref_2632_upstream	91	81	118	94	95	83	96	59	84	75
TAGGAATTATGTTCAT	alt_2632_upstream	255	226	358	313	211	254	239	260	246	227
CCCCTTATCACTTGCC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTTCTGAGACAGC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTTTCGGAGTTGC	ref_2632_upstream	23	21	38	20	15	14	31	18	14	23
GTCTACAGGCTTGGAA	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CCATTAACGACATTGT	ref_2632_upstream	72	62	149	96	82	98	78	89	78	76
CACAGTGCAACTTGGC	ref_2632_upstream	67	63	81	84	93	69	79	79	83	56
CTGCTAGGCTGGGGTG	ref_2632_upstream	7	3	6	6	2	2	0	4	2	4
GATGGTAACTTGGGTA	ref_2632_upstream	125	110	161	138	115	155	132	122	132	113
CGTGGGTCTTAAATAC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CATAGGTGCGCCTCCC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGGATGATATTGG	ref_2632_upstream	52	58	64	69	51	56	58	60	57	41
TGTATAGATGAGCACT	ref_2632_upstream	20	14	12	18	18	22	31	17	23	10
TGCCTGAACGTACAAG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
ACCATGATACAGATGC	ref_2632_upstream	60	56	69	48	59	39	68	40	76	41
ACGTCATTTTGGACAC	alt_2632_upstream	81	68	89	88	88	81	79	92	86	73
TCGATATCATCTGACC	ref_2632_upstream	310	253	424	340	306	323	276	275	273	293
GAATGTAGGCTTACGT	ref_2632_upstream	29	29	53	25	38	40	52	27	33	32
CTCGTTGCTCTATTGC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGTGAGGCAACGC	ref_2632_upstream	95	68	98	99	76	97	98	89	68	81
GGGTGGTTGAAGTTTA	ref_2632_upstream	16	19	25	27	19	22	28	26	23	21
TTTGAGCTAATCGGCT	ref_2632_upstream	41	45	60	34	42	36	37	36	46	37
GTAGGATAAGTTAGGT	ref_2632_upstream	42	61	78	69	56	40	53	50	51	47
AAGTCGCCCAATTGAT	ref_2632_upstream	89	62	87	101	72	76	63	83	76	56
ATACGCGGAAATGCGT	ref_2632_upstream	13	18	28	21	20	16	17	14	15	20
TGTCTTATCGTGTGGA	ref_2632_upstream	82	59	105	71	56	71	72	45	58	65
TGTTGCCTATTTGTCT	ref_2632_upstream	1	5	1	4	2	3	2	3	5	0
GTAGGTAAGAAAGCCC	ref_2632_upstream	147	138	194	174	115	152	163	119	156	149
ATCATGGAATATCGCG	ref_2632_upstream	137	109	167	148	109	143	95	138	127	121
GGAGCTATGAGGTACA	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGGTGACACTTCA	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGAAATCTGGTCA	ref_2632_upstream	33	28	28	27	22	23	24	22	23	27
ACAAATTTACAGGGTC	ref_2632_upstream	31	29	34	35	38	31	21	25	30	30
CACAATTGGTCAGCAA	ref_2632_upstream	200	172	216	174	204	178	210	190	177	160
CGATCAGTTGTTCTGC	ref_2632_upstream	29	17	16	27	24	20	30	20	30	14
AGGTAAGAGCAATCTT	ref_2632_upstream	65	51	75	81	61	60	54	75	61	65
AGCATTGCGGAGCACA	ref_2632_upstream	32	30	49	22	27	28	25	33	22	27
GAGCCCGGACAGATCT	ref_2632_upstream	83	54	82	57	52	69	52	60	79	77
TCGGTAAGATGATTGC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CCGGACAGCCGCTTCA	ref_2632_upstream	38	41	46	36	34	41	26	49	36	51
TCAGACCTGCAGTTTT	ref_2632_upstream	39	67	69	52	79	38	56	48	61	47
CGTAACTTCCATGCCC	ref_2632_upstream	227	184	279	202	198	171	156	218	220	196
TGGATCCATCCGTTAG	ref_2632_upstream	0	2	1	1	5	2	0	1	4	4
GCGTAACATTCAGCTT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAATCTTTGGTAT	ref_2632_upstream	29	13	28	32	31	33	17	19	17	26
AAGTTGGCGCACCATT	ref_2632_upstream	78	48	81	47	45	60	55	53	50	44
GCGAGTGTAATGCTAG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CATCAAGTGTAAGATC	ref_2632_upstream	33	26	35	43	29	27	32	37	32	37
GGTAGAGATTTATGCT	ref_2632_upstream	24	30	33	38	32	37	35	36	26	15
CCATAGTAATCGATCC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTTCTTCGTTGCT	alt_2632_upstream	165	134	244	159	118	186	142	159	175	162
TTCTCTAGCGTCCTAC	ref_2632_upstream	48	43	65	46	47	53	52	48	46	52
AGCAATCCCCCAGTGG	ref_2632_upstream	51	50	56	66	44	66	51	45	47	46
ATTTCACCTCTACATG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
AGGGACTCATCCTCTC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTGTATTGGCGCCTTT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGCGGGCGAAAAA	ref_2632_upstream	36	37	42	44	44	52	39	42	37	44
CCAGTGAGAATATCTC	ref_2632_upstream	18	21	10	13	24	8	25	14	20	9
TCACCTTGACATAATA	ref_2632_upstream	19	17	15	15	23	12	34	15	29	15
TACGGTCCCGGCCATC	ref_2632_upstream	39	25	55	41	26	45	27	25	38	46
CACCGCATTATGCCTT	ref_2632_upstream	20	30	5	17	46	11	33	11	33	8
CCGGTCCAGCGATGAT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCCCAACACTTC	ref_2632_upstream	48	52	53	60	50	42	64	32	56	47
CGCGCTTCTTCACCGA	ref_2632_upstream	9	8	18	16	6	8	11	5	9	16
GTCGGTTAGATTTGGA	ref_2632_upstream	55	59	74	69	77	52	57	56	81	59
CGTACCTTGGGGCTTT	alt_2632_upstream	40	37	56	47	33	57	40	38	40	26
CGCGATTTGTATCCTG	ref_2632_upstream	34	19	37	23	23	37	25	31	28	26
AAATCGTTACTAGAAC	ref_2632_upstream	29	28	47	26	25	34	42	20	35	27
CTGTACTTATAGTCTG	ref_2632_upstream	42	52	68	46	54	38	54	47	44	36
TCCTCCTCCGGTCGCT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCACCGGTTCAGG	alt_2632_upstream	144	150	233	215	197	191	207	160	200	163
GTTAGACCCGAGTTCC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
ACCTATTTTCTCGTTT	ref_2632_upstream	10	8	12	7	14	11	5	9	5	10
ATTTATAGCATTCCCC	ref_2632_upstream	114	99	107	86	102	72	131	70	86	69
ACGTTAAACTTGGCCA	ref_2632_upstream	12	10	15	8	9	9	10	6	12	7
TTCCTGGCAAACCTAT	ref_2632_upstream	84	79	139	97	75	101	74	89	101	104
CTATCTCTAGAACAGT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTGGGAATAAGAT	ref_2632_upstream	11	17	13	10	12	12	10	17	18	14
GTTAGCCGCTCGTCAA	ref_2632_upstream	13	21	18	11	18	20	25	23	18	19
CTCTTCCTGGATGACG	ref_2632_upstream	45	49	59	49	46	59	44	41	50	35
TTCCCTCCAAATACCA	ref_2632_upstream	0	0	1	3	4	0	0	0	2	0
TCACCTTTGTAGATTA	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
AACTTTACTGTCTGCG	ref_2632_upstream	1	2	3	0	0	0	1	2	0	0
ATCGCTGGCGGGGTGT	ref_2632_upstream	18	12	27	21	22	21	19	16	10	17
GAATTAAATTCTAAAT	ref_2632_upstream	38	26	50	58	27	35	24	42	30	54
TGATACTGAAGAATTT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTGTCAGCGGCT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TACGGACAGACTGGTG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTTTAATGCTTAT	ref_2632_upstream	23	10	22	11	12	8	11	16	17	7
TTTTAACATTGAGACG	ref_2632_upstream	12	10	17	13	9	10	11	9	12	5
GTGTGAGTCTTCCTTC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TACTGCCTTCTGCGGA	ref_2632_upstream	30	24	33	25	24	26	20	26	26	23
CACTGTTTTTAAATAA	ref_2632_upstream	60	69	84	56	69	52	62	71	74	52
CGCTAATCGGGAACGC	ref_2632_upstream	62	46	55	74	34	47	39	49	43	36
TCTATCACGGGCGGCT	ref_2632_upstream	21	25	22	41	12	25	20	22	21	24
TAGGGCTATAATGGCT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TAACGTCTAAGAGTTC	ref_2632_upstream	31	46	24	24	58	19	39	32	45	29
TTTCGTAATGTTTCTA	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
GAGATTTCTTTGGATT	ref_2632_upstream	173	145	184	166	132	130	156	140	143	132
CTGTAAACTACTCTCC	ref_2632_upstream	50	44	66	58	53	71	46	55	62	49
GTTACCTCAAATACAG	ref_2632_upstream	25	26	34	24	17	20	26	30	37	22
TTCTCTCTCCTGTTGT	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTTTGAGAGACCC	ref_2632_upstream	9	11	12	16	11	19	20	7	10	16
TACTCAAGTATTTCCG	ref_2632_upstream	23	14	18	21	9	14	14	17	16	19
TGGGTTTAGTGTATGT	ref_2632_upstream	8	7	18	18	10	10	8	20	7	15
ACCGTACAATCTGCTC	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGACTGAATATAG	ref_2632_upstream	71	63	79	79	75	74	88	55	71	56
CGAATCCGACTGCCGG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
GTATCAGCCTGTGCCG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGGGTTTCTGTAG	ref_2632_upstream	19	7	13	8	12	12	10	15	11	8
GCTCGCAGCTATAAGG	ref_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTGGCCGTTAGA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TGAAACAAACATGTTT	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCGTTACAATG	ref_5862_new	20	30	19	13	35	17	38	21	47	12
AGCTTGCTCTATCAAG	ref_5862_new	28	51	37	40	63	41	63	27	64	28
GGTTTTGGCTTATAGA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
ATTTGCATCGACGGCT	ref_5862_new	17	37	19	8	36	16	37	11	22	12
GCAGCGTGCTATCCGG	ref_5862_new	93	117	88	67	115	72	110	68	124	56
CTACGCTCTCGTTTTT	ref_5862_new	11	18	17	18	29	24	28	16	32	13
GGACTGGCTTGGCTTC	ref_5862_new	11	19	10	5	17	8	15	10	20	10
CTCCTTACCTAGGCAA	ref_5862_new	35	140	76	73	142	50	126	58	147	28
TTATCCGAATTGGCTG	ref_5862_new	0	0	0	0	0	0	0	0	0	0
CGGATAGCGTACTCTA	ref_5862_new	6	8	6	11	11	2	9	2	8	4
GCGTACCAGCTTTAAT	ref_5862_new	17	37	22	15	43	18	63	15	33	12
CATCCGGCTGGGTAGA	ref_5862_new	0	0	0	0	1	1	0	0	0	0
CAGGGGGGTGGTCTCT	ref_5862_new	0	0	0	0	0	0	0	0	0	0
AATTGCATTCTATAAG	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TTTTTCCTCTGTTTAA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TCGGGGAGTACCTGGT	ref_5862_new	38	62	35	27	48	35	58	23	69	16
TCTATTACACTTTGGC	ref_5862_new	23	47	26	14	55	19	52	19	53	20
ACTCTGCGTCTATTGG	ref_5862_new	2	1	3	3	1	3	2	0	4	1
CGGTAGTTCTTGTCGT	ref_5862_new	0	0	0	0	0	0	0	0	0	0
AGGTTAACAGGCTGTT	ref_5862_new	16	31	28	15	24	6	26	11	32	18
GTCGATGGCTGACCGA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
CACAATGTGCGCCACA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TTCTGGTTTGCGACCT	ref_5862_new	24	46	35	28	54	22	31	16	46	23
TGGCACTGACTTGAGA	ref_5862_new	0	5	3	1	6	5	3	4	5	1
CTGACTCCAACATGAG	ref_5862_new	13	23	8	11	16	13	23	19	30	15
AGGCTATTATTCGGGT	ref_5862_new	27	53	46	26	59	25	48	39	51	31
TTCTGCGACAATGCAC	ref_5862_new	1	4	0	1	3	0	3	0	6	2
CGCTCTAGTCAGGACA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
AACTACCTGGGTACCA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
CCCCCGGCGCCGGCCT	ref_5862_new	0	0	0	0	0	0	0	0	0	0
AGCACGAATTTCATCC	ref_5862_new	18	27	17	20	26	18	33	13	20	12
GTTTGCGATGGCGGGC	ref_5862_new	101	161	115	101	114	91	151	97	162	75
CCTCTTGTTTCGTTTG	ref_5862_new	7	10	2	10	20	3	11	9	12	8
GAGGTACTAAAGCCGC	ref_5862_new	3	13	6	5	15	6	16	4	9	4
GCACTTTTTGACTTGT	ref_5862_new	69	97	60	50	103	51	110	36	100	35
TTCGCCGCCATTCCCT	ref_5862_new	17	38	25	23	22	11	22	20	33	16
TCGTGGGTGACTCCGC	ref_5862_new	6	12	6	7	13	3	8	7	17	7
TCGAGACCGCAAGCAA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TTTGACCGGTGATTTT	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TCTACGGTAGTTAAGA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
TTTCGGGGAAGGCTCA	ref_5862_new	4	10	2	7	7	6	19	5	7	4
GTAAGTGAGGCCTACC	ref_5862_new	0	0	0	0	0	0	0	0	0	0
CATGTCTGCTTGAGGA	ref_5862_new	25	50	28	27	36	26	51	17	49	21
TCTCTAGCTTTAGGTT	ref_5862_new	1	16	6	8	16	10	19	12	12	11
TCCTCCTCTATTCTCC	ref_5862_new	13	8	9	9	11	3	12	9	6	4
GCTTCCGGTACACTAT	ref_5862_new	18	54	42	30	61	37	62	31	61	15
CTGAACTGATTGGTGA	ref_5862_new	40	79	47	42	85	39	84	45	93	27
TTTACCTACTGACGCC	ref_5862_new	6	12	11	4	21	15	20	9	10	3
TCCTGCATTCGTACTT	ref_5862_new	3	14	12	13	9	2	14	8	16	9
CTTGCCGTTAGGTGTA	ref_5862_new	0	0	0	0	0	0	0	0	0	0
CCTTACTTGCCGAGCA	ref_5862_new	15	29	12	10	26	11	33	13	24	9
GTCCCGCCCGCTCAAT	ref_5862_new	5	17	10	12	20	6	14	11	18	11
TCGGATCAACGTGTGA	ref_5862_new	0	1	0	0	3	0	0	1	1	0
TTTGTCCGCTACAGGC	alt_4003_upstream	27	54	32	23	48	39	46	30	56	32
CAATCGAAAGCTTCGA	alt_4003_upstream	46	123	88	65	89	46	105	72	110	46
TACACAGGATCACTGA	alt_4003_upstream	3	3	7	6	12	11	12	3	20	2
AACCGCCAGCCACAGG	alt_4003_upstream	8	14	8	7	19	9	4	6	8	6
GTGAACATGTAATGTG	alt_4003_upstream	4	9	4	3	12	7	14	7	12	5
GGGGGCTCCAATCGTT	alt_4003_upstream	1	6	3	2	5	1	5	3	3	1
TTTGTAACACATATAT	alt_4003_upstream	21	29	16	12	45	12	26	12	30	9
TTAGTCTAATAGGTTA	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
CTCACATTTAAATGCA	alt_4003_upstream	15	55	28	21	60	21	63	26	66	17
TAACTAAACCTTTATT	alt_4003_upstream	18	24	22	17	20	9	25	12	28	9
GTACCGTTCCTTTTTC	alt_4003_upstream	6	4	3	2	15	2	8	6	19	2
TCGCAAAGCATAACAT	alt_4003_upstream	23	37	38	18	36	26	54	29	62	26
TTCACCTAGGTCTACT	ref_4003_upstream	8	35	6	7	35	7	35	6	26	4
GTGCGATTTTCGCCGT	alt_4003_upstream	36	70	34	41	67	40	77	38	92	40
TGAGCATCTTTCGGAA	alt_4003_upstream	5	13	9	10	10	4	16	4	12	8
GCGTTGGTTGCATTCT	alt_4003_upstream	9	24	19	13	26	12	28	7	36	16
TTGTAGAGACGGCAAT	alt_4003_upstream	3	6	1	1	3	2	2	1	1	1
CTCAGCTTGGGCAAAG	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
TCAATGCACATTAGAC	alt_4003_upstream	14	27	13	17	29	9	31	11	33	12
AAAGTTTCGTTTAGGA	alt_4003_upstream	10	21	15	17	24	16	22	14	24	11
TATATTAACGAGTCAT	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATGTACTTGTCC	alt_4003_upstream	7	23	5	4	25	6	13	1	17	7
GATACTGCTATCTTTG	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGACATCTTTTCC	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCGGACGAACCCT	alt_4003_upstream	6	17	12	19	32	13	36	9	25	15
TCCCGTCCTCGGAAGT	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGTATCATAGTT	alt_4003_upstream	24	21	16	15	33	16	16	13	33	8
TTCAATTTTTGGCTGT	alt_4003_upstream	17	24	24	16	38	14	23	19	37	18
CTCCCGCGTAGAGATC	alt_4003_upstream	12	54	18	6	53	12	66	5	59	11
CCTCATTGGGTGCCAG	alt_4003_upstream	36	86	55	34	84	48	83	35	59	48
ATCTAGACTGATTAAA	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTAATTTGTTTCT	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGCTTATATCGTA	alt_4003_upstream	25	51	30	19	45	20	45	28	37	22
GTATGCCTCCCGAAAT	alt_4003_upstream	90	208	141	119	187	84	199	107	201	93
GGCCTTATATAAGGTC	alt_4003_upstream	1	1	0	3	2	1	5	0	2	2
TCCTTTCTACTCGACC	alt_4003_upstream	21	64	22	26	52	33	51	13	73	23
CATTTTCCCAGGCCAG	alt_4003_upstream	54	86	70	66	94	34	67	56	93	36
CTTCCTGAGTCCTCGT	alt_4003_upstream	13	24	20	19	27	12	22	14	38	11
TTCCTTTAGTTTATAC	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
AGTACGCTTTGTAAAG	alt_4003_upstream	18	44	34	19	46	13	30	16	52	18
CAACGTAGTCCATCTG	alt_4003_upstream	5	26	2	6	9	3	11	4	21	4
ATGCTATAGTAGAGTT	alt_4003_upstream	36	56	37	38	63	28	58	30	61	29
TTCATTACCTTGTTCC	alt_4003_upstream	8	38	20	16	34	12	40	10	42	7
GGGCTAATTGTGCCTG	alt_4003_upstream	2	3	2	0	0	0	2	0	1	1
CCAGCACAGAGTCCGC	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
CATTACGAGCATGTCA	alt_4003_upstream	11	18	12	7	26	11	17	7	9	11
GTGCTCCGTGAGTGCT	alt_4003_upstream	6	14	7	4	9	8	8	5	9	1
TTGTTTCAACGCATTC	alt_4003_upstream	13	20	14	17	31	16	22	7	24	7
CTATCTCCGTTGTCTA	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
TGTTACCCCGTGGGTT	alt_4003_upstream	10	28	13	15	34	8	32	19	27	15
TGGGGGACTAATCCCC	alt_4003_upstream	8	17	10	5	11	9	14	7	11	9
GGCGATATCTTATTGG	alt_4003_upstream	36	72	46	32	69	33	74	46	70	45
TCATCGGGCTTCTGTT	alt_4003_upstream	0	1	2	3	4	0	2	0	4	0
ATCTTTTGTCTAATAT	alt_4003_upstream	29	50	19	21	49	30	52	19	49	24
CCGAACGTCTTTGTAG	alt_4003_upstream	8	22	8	9	20	7	20	1	16	3
TTAGTTTACTTGCAAC	alt_4003_upstream	70	135	88	47	140	66	119	59	118	46
ACGCGCACGGATCACT	alt_4003_upstream	41	77	56	44	74	41	68	36	68	52
CCCTCGTGTGGGGGTA	alt_4003_upstream	24	27	26	34	56	24	43	22	56	18
TTCTTTGCTACGTGCA	alt_4003_upstream	21	45	16	17	36	14	44	15	45	16
GTGTTCCGTCCTCGTG	alt_4003_upstream	4	3	5	7	7	5	6	1	11	3
CACAGATTTGGTTTCA	alt_4003_upstream	8	20	20	13	21	12	25	18	30	3
TCCCTTGAAGTCACAA	alt_4003_upstream	14	54	15	14	35	15	63	13	55	16
CTGTAGGTCCTCTAGG	alt_4003_upstream	30	41	45	25	45	32	58	24	60	24
TACTGTCCCTTTATCC	alt_4003_upstream	3	18	9	5	27	11	15	8	27	9
CGGTTAATCCCAGGTG	alt_4003_upstream	17	29	26	18	41	8	54	14	36	14
ATTTATTTTCTAAGAT	alt_4003_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTCCTCGACATGT	ref_2205_upstream	6	2	3	5	2	7	2	0	3	0
TTGAAGTTGCGGGCTG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
AATTAATTGAAATATT	ref_2205_upstream	24	12	20	28	19	19	23	17	16	23
ACTGTCTCCTTTCCGA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
AGCCGATTCACCACGG	ref_2205_upstream	14	11	15	17	9	12	8	20	15	14
TGCTTTTTCGTTTGGG	ref_2205_upstream	336	205	384	369	265	299	181	327	234	289
GTGGCCCAGGCGTGTA	ref_2205_upstream	38	34	56	38	33	36	29	33	26	27
AATTCTCATAGTTTGG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTCAGCAACAGG	ref_2205_upstream	32	9	32	21	12	20	7	15	12	20
GTGTTGTAAAGTTTCC	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CCTTAATTTCGGAGCT	ref_2205_upstream	62	90	67	68	87	63	88	71	77	73
CAATCAACGTTACACC	ref_2205_upstream	8	20	21	17	10	13	6	11	13	17
TAACATTTTAGGCAGC	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGCCAACATCATC	ref_2205_upstream	36	78	48	30	63	30	70	37	81	19
GGCGCATAATCAAACT	ref_2205_upstream	7	6	8	4	5	6	7	2	1	3
GCCCCTAACATACCCC	ref_2205_upstream	103	74	105	106	96	83	69	115	83	101
CTTCACTTGTGAGGCA	ref_2205_upstream	43	19	37	35	22	44	36	30	36	38
TAAAGTCCCATGTGAC	ref_2205_upstream	7	3	5	4	2	4	5	7	2	5
TTGTGTCCAAGTCGTA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGTCTTTGGCTTG	ref_2205_upstream	82	60	82	84	81	66	59	70	57	61
TCAACTGACACTTCAA	ref_2205_upstream	21	18	10	23	16	18	22	14	16	13
GGCTCAGTGATTCCAA	ref_2205_upstream	22	16	34	19	15	22	18	23	21	16
GTTGTTGTAGACGTGC	ref_2205_upstream	7	8	17	10	10	20	12	8	11	7
TACCGCATATTTGGGC	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CGTTAGACCTGTACCA	ref_2205_upstream	18	11	22	20	8	22	14	21	9	16
TCGACCACCTCTTCAC	ref_2205_upstream	1	1	2	2	1	6	1	2	1	2
TTTCCAGTATTACTTG	ref_2205_upstream	122	73	126	106	85	133	103	103	85	97
ACGAACGCAATGGCGT	ref_2205_upstream	18	6	18	15	16	17	13	9	5	9
GACGGTGAATTAGACA	ref_2205_upstream	6	5	9	13	11	6	19	10	5	15
GGTTTGATCGTATTCT	ref_2205_upstream	52	43	64	39	32	41	27	34	26	32
GTACGTTTTGGCCACC	ref_2205_upstream	51	47	70	47	43	39	37	39	37	32
TGTCGTCTTTCTAACC	ref_2205_upstream	89	40	83	71	57	67	47	74	59	45
TTCTACTTGGTAGTCT	ref_2205_upstream	65	61	88	80	54	60	50	85	71	59
TGAACCTGACGATGTG	ref_2205_upstream	15	13	16	24	16	14	22	19	21	21
GATGCACATTAGTTCT	ref_2205_upstream	9	10	11	15	17	10	11	7	9	8
CCTCTACGTTTTTCTT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCATCTTTTTAT	ref_2205_upstream	94	54	85	98	70	96	62	82	64	69
TCATATTTTTTTGACA	ref_2205_upstream	71	54	71	58	40	64	60	42	63	43
ATAGTTAATGGAGGAA	ref_2205_upstream	17	8	18	19	16	24	9	8	11	18
AGAACCCCATTGAGTA	ref_2205_upstream	27	25	30	21	22	26	17	23	19	22
TATGCGGTCGAGTCTG	ref_2205_upstream	82	77	119	102	71	122	79	105	72	96
CTCACCTCGTAAGAAT	ref_2205_upstream	2	3	2	1	1	1	4	1	7	1
ATCCTACGAGCTGCGT	ref_2205_upstream	11	12	20	18	12	16	6	4	17	12
CTTTGCCCTTTGCGAT	ref_2205_upstream	16	16	27	25	13	16	19	24	12	16
TTTTGTTTGGTATCGT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGAGGGCGTTACT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTGTTGCAGGAGA	ref_2205_upstream	44	41	52	43	34	49	49	45	39	36
GGCTTAGGGTGCCGTT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CCTTATCGTTATAGAA	ref_2205_upstream	4	6	3	10	2	8	5	4	5	9
GTATTTGTGCTAGGTG	ref_2205_upstream	59	44	74	53	27	45	44	51	53	43
TAGGGTTTCGGAGGTG	ref_2205_upstream	5	2	3	8	6	2	2	2	3	3
CTCCTTACTTTATTGC	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CAATGATTGTCTAACT	ref_2205_upstream	42	56	76	58	43	39	45	55	38	38
TAACTTGGTTGACCCG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TAGAAGTTGGCTGTCG	ref_2205_upstream	2	0	0	2	2	4	1	2	3	0
ACTTTCAAGTCCAAAG	ref_2205_upstream	6	2	7	4	0	1	4	3	2	0
ACACACGGATGACATT	alt_2205_upstream	147	104	205	152	107	150	115	142	127	122
ATGCCAGCCAGTAGTT	ref_2205_upstream	41	30	53	49	33	30	36	27	37	36
CTGCGTCACCTTTTGG	ref_2205_upstream	102	76	127	102	105	106	95	90	90	78
GCCACAAGATGACCGG	ref_2205_upstream	9	4	4	6	7	8	1	7	0	3
CGACCTAGTCTCTGAG	ref_2205_upstream	40	80	55	56	86	47	95	54	93	59
CTGGTTCTGATCACAT	ref_2205_upstream	13	3	5	6	7	11	4	6	4	9
TTTTAATGTTAAAGAT	ref_2205_upstream	263	164	341	280	183	256	210	205	200	249
CTGGGCTCCAGCATGT	ref_2205_upstream	53	32	66	60	35	57	37	44	32	45
GCTGCCTTGAGGTTGC	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTTGGGCTCTCAG	ref_2205_upstream	15	13	26	13	19	20	12	14	14	15
AGTTGACTAAGGGTTA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CATTGGCTCGGCGATG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TGAGGTACCGGGTCCT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CTTAAGATAGGTTATT	ref_2205_upstream	53	43	58	48	41	39	29	53	37	49
TCCATGTGCGTATAGA	ref_2205_upstream	283	293	359	357	359	319	331	302	370	284
CAGTGTGTTTTCTTCA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGGTGCTTTGGTA	ref_2205_upstream	13	8	19	12	10	14	13	7	18	6
TCGCCTGGTTTCTCAT	ref_2205_upstream	57	46	75	52	64	63	52	61	67	60
ACGTCAAGTGTGCTAC	ref_2205_upstream	4	3	9	5	8	6	5	7	2	0
GGCTGTCCATATGGTC	ref_2205_upstream	68	42	81	52	45	74	42	62	50	58
CGTGTTTTCTTGGCTC	ref_2205_upstream	111	50	110	130	67	101	71	127	88	107
TGTATTTTTGGAGTTG	ref_2205_upstream	29	34	39	38	34	22	25	34	38	45
GATGCGCCTAACAATA	ref_2205_upstream	49	39	59	51	35	47	45	49	34	46
TTTGTTGGACTGATTT	ref_2205_upstream	65	54	76	70	54	57	61	62	70	57
GCTCACTTCGTCTGGT	ref_2205_upstream	16	21	26	33	22	27	16	17	22	21
TAGGATCATGTCCAGT	ref_2205_upstream	32	24	33	28	21	30	23	27	18	23
TGTGACCAGCTATTAC	ref_2205_upstream	8	8	15	15	3	2	2	14	7	7
CGGTAAGCTCAAGATG	ref_2205_upstream	41	23	44	32	19	45	29	30	26	26
GTACATAGGTGTTCCA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGGATCTCATGTT	alt_2205_upstream	395	254	427	388	246	389	303	319	300	323
GTTTTTAGTGTTGGTT	ref_2205_upstream	114	93	150	119	66	106	103	84	109	101
GGCGCACAGTCGTCAC	ref_2205_upstream	3	1	7	3	3	2	3	2	3	5
ATCTGTACATCTACTA	ref_2205_upstream	27	24	24	37	27	26	30	26	20	39
AATGGGTTGACTGATT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TAATAGTCTTTCCCCA	ref_2205_upstream	6	5	12	14	11	8	5	8	7	20
ACCAGAATAGGAGCCA	ref_2205_upstream	34	23	47	32	34	38	25	42	25	29
ATATCGTATGGCCTCT	ref_2205_upstream	1	2	3	5	2	4	2	2	1	3
GAGTGGTTCACAACCG	ref_2205_upstream	79	66	86	83	80	82	46	93	70	70
ACGACCAAACCGATAA	ref_2205_upstream	21	16	26	18	20	13	15	14	16	14
CTTCATTGTTTACATA	ref_2205_upstream	20	37	31	21	41	21	37	20	39	26
GCACTTGTTGTTGAGG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TACGTGCAAAGGCCCA	ref_2205_upstream	9	4	2	6	5	10	1	3	12	3
GCATGGAGGTTTGGAG	ref_2205_upstream	190	136	257	236	132	193	175	157	165	181
TGGCGGTCCACGCTTT	ref_2205_upstream	69	48	88	70	43	60	34	62	46	52
TCCCACATCCGCAGCG	ref_2205_upstream	39	47	37	43	64	42	63	50	43	34
GTTGTTGCTAAGGTAT	ref_2205_upstream	87	52	91	91	78	70	56	80	44	82
CAACACCCAATGTGCG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
ACCATGTGCGTATAGA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTTTTGTGTTAC	ref_2205_upstream	94	76	119	108	94	101	79	75	88	76
TCATTCTTTTACTCTT	ref_2205_upstream	6	1	4	6	1	2	2	1	4	2
GTGGTTCAAGTCATGT	ref_2205_upstream	226	202	320	264	201	259	216	237	226	232
GTTCAATTGTCCTGTG	ref_2205_upstream	28	20	38	33	33	40	30	27	31	25
TGAGTTAATGGCTCTA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCTACTCTACGGA	ref_2205_upstream	118	107	148	121	108	74	123	103	110	101
CGCTTTTAAGTTTGCA	ref_2205_upstream	59	55	48	57	54	59	61	48	48	48
CTTCGGGTCTCTAATG	ref_2205_upstream	3	18	6	7	25	8	17	11	20	4
TGAGTTTCTAGATGTT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTAAAACCTGGGC	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGGAGACAGTTAT	ref_2205_upstream	61	33	84	58	40	46	40	70	40	50
CCGGCGATGGAGTACC	ref_2205_upstream	2	2	0	1	3	0	1	1	2	3
CCGGGGTGATTGTTGG	ref_2205_upstream	109	132	182	139	112	135	122	107	113	104
CCGTGGGACCGTTTTT	ref_2205_upstream	4	2	9	2	7	2	5	0	10	3
TGGTGGATTTTGATGG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTTTCTGGCGCGG	ref_2205_upstream	8	14	8	9	8	5	10	3	13	6
ACATTTCGAGTATATG	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CAAGCGCCGTAACGGC	ref_2205_upstream	14	16	16	14	12	18	6	11	10	14
TGGTAACTTCTTTGTA	ref_2205_upstream	131	97	130	115	89	95	89	115	102	111
GCTCGTCACAGCAACT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
CCCCAGTATGAGATGA	ref_2205_upstream	36	21	60	32	38	33	29	43	41	29
ATAATCTGGGCTTAGC	ref_2205_upstream	71	46	82	61	42	64	55	74	48	55
CTATCACTGCATACGA	ref_2205_upstream	64	47	73	62	30	60	49	46	51	46
CGGTTGGGGCCTACCA	ref_2205_upstream	94	51	102	101	66	76	70	73	49	68
GAGACAGCTGCTCGCC	ref_2205_upstream	57	45	70	52	37	66	43	52	47	47
TTCATTCGCCACAACT	ref_2205_upstream	6	9	20	8	11	13	14	13	8	13
GGAATGGGGGATTGTC	ref_2205_upstream	94	67	137	98	89	97	96	102	103	65
AGGTGCAACACAAGGA	ref_2205_upstream	24	20	37	20	25	21	27	36	22	31
TGTGCCTGCCTATGAG	ref_2205_upstream	36	30	47	41	32	23	35	37	34	29
TCCCTCAGCAATTTCG	ref_2205_upstream	27	28	46	51	48	40	32	33	23	40
CCCGTGATCACATTCA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
GGATAAGAGTGGGCAA	ref_2205_upstream	129	111	179	144	101	120	108	155	118	129
CCGTGTGGGTCAAGCT	ref_2205_upstream	1	3	1	1	3	2	5	0	5	2
TAGATGATATCTTCCG	alt_2205_upstream	40	39	40	49	34	37	37	31	43	29
TCGTGCTTCAATGACC	ref_2205_upstream	5	4	9	14	9	16	11	5	20	5
GGGTGATGCGCAGGCT	ref_2205_upstream	6	11	15	11	14	15	16	9	8	18
CACTTACGTTGTTAAC	ref_2205_upstream	54	43	50	57	37	38	45	44	34	51
GCGGTCTGGGCTTAGA	ref_2205_upstream	22	13	18	18	12	14	14	9	15	13
GTTTTAATTGTCTTGA	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAAGGTGTAGTCG	ref_2205_upstream	36	43	51	45	31	22	41	33	43	29
GTTTCCAATATCTGCT	ref_2205_upstream	17	4	17	11	9	13	9	12	4	6
TTCTCGGGTATTCCTT	ref_2205_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGCTTATTTTCGC	ref_2205_upstream	66	53	72	72	41	68	48	62	54	68
TGATAGTCAATTTTTA	ref_2205_upstream	16	5	20	23	10	10	10	9	9	6
CCGCGATCAATTCTTT	ref_2205_upstream	102	110	156	118	74	112	78	116	104	107
TATTTCGAGATTCTTT	ref_2205_upstream	18	10	11	11	10	11	12	6	10	8
TTGGTCGTTACTTTAC	ref_5261_reverse	27	27	30	26	39	29	34	22	54	24
CTCGGGAATATATGCG	ref_5261_reverse	9	16	15	10	23	5	16	10	13	5
TATTAGCGGCTATGTC	ref_5261_reverse	28	35	26	31	35	29	31	35	26	23
GATTCGACTTCGTCTA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CCCATGATCTCACGTG	ref_5261_reverse	2	0	1	1	0	0	1	0	1	0
GTCCTGTTGCCCTACG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGCCTAAGACACTTAT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
AACTGATGTCGTTTAT	ref_5261_reverse	29	31	38	31	39	38	42	42	36	39
TTGTCGTACTCCGAGC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCTAGTGATAGTG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCGGAATCTCTCGTTA	ref_5261_reverse	1	7	2	1	6	1	5	5	9	4
TCAATAGCGTCTATTT	ref_5261_reverse	20	44	34	33	45	27	53	28	58	21
GACACTTACGCCTGTA	ref_5261_reverse	40	40	41	40	54	31	80	24	68	23
AATTACCAGTTTTAAA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCGCACCGACCGGTCT	ref_5261_reverse	1	0	0	1	0	0	1	0	0	0
AAGACGCCTTGCTCTG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCGGGGCGACGAC	ref_5261_reverse	25	36	51	32	40	31	35	37	32	23
TTCAGCACACGAGTAC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CATAATACTTCAGGCG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCTGATTGGAATT	ref_5261_reverse	8	4	2	0	2	6	7	2	5	3
TCAAGTCTCACGTTGG	ref_5261_reverse	10	16	8	19	14	10	23	4	14	7
GTTCATATTACAATAA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CATCTTGTCTTCTTAT	ref_5261_reverse	38	67	59	45	95	42	85	33	90	43
CAATGCGTTTTTTTGC	ref_5261_reverse	8	9	4	2	11	1	6	5	5	2
TCTGAGTCTTTTATAT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTCTCTTGTGGTG	ref_5261_reverse	71	102	82	79	110	60	120	66	96	61
CTCCCTCGCGGCAATA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTGCGGTGCTTCA	ref_5261_reverse	17	19	21	13	17	13	30	20	35	9
TGTGTGAGCTGATGCC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCCTTCATAGGGC	ref_5261_reverse	4	12	13	7	8	12	16	6	10	12
GTTTGTGACTGACCGT	ref_5261_reverse	10	8	7	6	8	11	22	10	15	15
AACATTGAACAAGATT	ref_5261_reverse	3	3	6	3	0	2	10	9	4	3
TTGACCGTTTCGCTGC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTTAACACTACGGCTG	ref_5261_reverse	35	24	34	25	50	31	35	20	42	27
TACGCAGCTGGAATTC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTGAGACGGGGG	ref_5261_reverse	12	24	22	12	20	8	15	11	16	7
ATTGCCCTCTACCGGT	ref_5261_reverse	0	2	2	6	6	6	2	2	4	1
CTTAGCTCGCAGAAGA	ref_5261_reverse	7	14	13	3	10	13	17	9	9	8
TATCCAGGCTGGAAGC	ref_5261_reverse	49	71	35	32	56	26	57	35	44	39
GTATTCACTCCCGATT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TAAATCTACTTCAGTA	ref_5261_reverse	14	13	19	15	29	15	27	14	20	15
TCTCGCTCTGTTTGCG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGTGTTTGGACTA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTAGACTGCAGG	ref_5261_reverse	1	5	1	1	4	1	7	3	4	1
CAAATTTTTGTTTGAG	ref_5261_reverse	6	9	2	1	2	3	3	7	3	3
GTTTGTGTTCTTTATT	ref_5261_reverse	17	12	13	20	13	8	21	13	11	14
GCATAGTCACCGGATT	ref_5261_reverse	10	23	23	12	24	10	21	7	18	9
TAATTGGAGTCTCCAA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGCTAATAACGGA	ref_5261_reverse	38	36	42	26	41	30	32	26	43	27
TAAATCCACACCGCCG	ref_5261_reverse	24	27	27	21	33	26	21	24	24	21
CTCTGGGTTCAGCTCG	ref_5261_reverse	63	72	61	50	77	51	81	59	72	39
TAGCTGGACTACACGG	ref_5261_reverse	54	67	78	43	62	53	98	64	83	55
TACATGCCGCAAAGAC	ref_5261_reverse	6	29	9	10	16	3	17	12	25	9
TCGCCCGTTCCGGCTA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAATCCAGTATAT	ref_5261_reverse	18	30	39	26	37	24	41	20	48	16
ATGAACGCTCTGATTA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTACCATAGGCAGATA	ref_5261_reverse	10	5	11	6	7	9	18	11	15	7
CTGGCTCCTGCACCCA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGGGGGTTGCCTG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTCTCAGTTTGTG	ref_5261_reverse	7	7	9	13	18	8	5	5	11	7
CCTCCCTTTCGGATAA	ref_5261_reverse	48	67	61	42	73	39	59	41	51	25
TGCCATGGCTGCAGAC	ref_5261_reverse	0	0	0	0	0	1	0	0	1	0
GGGGGTTCGGCTTAAC	ref_5261_reverse	78	119	113	90	122	64	113	78	122	77
GACGTCGGCTGGTTCT	ref_5261_reverse	26	38	22	24	41	19	32	18	35	32
TTAGCCTGCATGGCGT	ref_5261_reverse	29	31	23	30	33	24	26	26	36	17
CGCGCAGACGTCCTGA	ref_5261_reverse	7	5	6	9	10	3	5	2	7	4
CGAACTTGGTTGCGTT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTTATGGCCTCAT	ref_5261_reverse	26	35	23	20	35	24	21	31	32	7
TTACCTATGGACTTCA	ref_5261_reverse	65	113	82	79	162	74	133	70	133	81
TGACCTAATGCATGCA	ref_5261_reverse	19	37	29	35	30	19	34	26	45	17
GCGCCGTACTTTGGTC	ref_5261_reverse	13	12	15	4	9	12	12	11	14	8
TCAGTCCCGAACTTGC	ref_5261_reverse	25	38	35	24	40	15	29	27	39	23
CGTGTATTACCTTCAA	ref_5261_reverse	26	48	41	38	48	28	51	38	49	25
TGTCGGCACCTTAATA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTCTGGCAGCCCA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATTAGAATGGTT	ref_5261_reverse	12	22	30	17	27	19	27	8	23	10
TAGTTCTTCCAATAAG	ref_5261_reverse	49	50	66	57	48	49	80	36	85	34
CTTCGCAGCTTGTGGC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAAGACGTTCCGC	ref_5261_reverse	14	24	13	13	25	17	20	13	28	15
TTTAGCTTATTCTGCA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCTCATTGGAAGG	ref_5261_reverse	55	66	66	47	79	35	82	32	63	39
TTTTTGGCAGTTCTAA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCTCGGAGTATTT	ref_5261_reverse	35	28	24	40	33	26	36	29	40	33
GTCTATCGGATATGGC	ref_5261_reverse	21	39	18	15	51	12	53	15	51	23
CTTACAGCAGGAACCA	ref_5261_reverse	1	3	5	1	1	3	7	1	1	4
CCTGTTGAGTCAAGGG	ref_5261_reverse	3	6	2	6	7	5	8	4	5	4
AAAGCCCTGTGTGAGC	ref_5261_reverse	26	48	33	30	51	21	36	30	38	29
TTCCGTTACTTTTTTA	ref_5261_reverse	24	31	32	18	25	22	32	26	36	22
ACGCTCGATTTAGGAA	ref_5261_reverse	24	32	24	27	33	17	30	18	38	27
TATTCGATTGGGGTTA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCCGTTTTCTCTG	ref_5261_reverse	18	33	38	22	52	20	35	27	37	16
ATTACGCAACGCGACA	ref_5261_reverse	0	1	0	0	1	0	0	3	1	0
TGGGTGCTCTCAAATC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGAAACATTCGTGTCG	ref_5261_reverse	1	1	1	3	3	2	2	0	1	3
GATTTTCCTATTTATA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTCGAAATACATCTGT	ref_5261_reverse	19	10	12	9	17	10	32	13	17	16
GTTGCTAGCATTGCCC	ref_5261_reverse	24	31	36	25	34	34	34	18	20	23
TTACGATGGCGCAATG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GCATGCCGTGGTCAGA	ref_5261_reverse	27	73	48	29	56	39	65	40	42	21
ATAGCCAGGTTCTCTG	ref_5261_reverse	17	42	25	22	34	31	44	34	44	18
GCTCTCTGGCAGACCA	ref_5261_reverse	66	129	93	72	107	61	110	61	94	59
CTAAACGTACCTGGGG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTGAAAACGGGTT	ref_5261_reverse	29	46	32	24	39	21	41	17	43	17
CTCTTCGTTTGATTAT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGTTTTTAACGTA	ref_5261_reverse	2	4	2	2	1	2	2	1	1	2
CAGTACCTGTTTCGAG	ref_5261_reverse	5	44	20	23	33	6	40	19	36	11
GCCTTTCTGTCGTCTG	ref_5261_reverse	7	3	3	6	5	1	10	4	5	6
TTCTTTGCGGCTCCTC	ref_5261_reverse	20	32	21	16	28	16	36	20	25	19
TAACGAGAAGGTCCGT	ref_5261_reverse	1	4	2	0	0	3	3	1	1	1
TGGTTCGATACCGGTC	ref_5261_reverse	5	3	2	1	4	0	3	6	3	0
TATGCGCTCGGGTAAA	ref_5261_reverse	28	35	30	27	34	32	35	21	41	23
TGATGTTAACACAGTT	ref_5261_reverse	42	48	47	44	60	41	57	41	61	30
TTGTTGACCGATCCTG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTCGTCACTGTGT	ref_5261_reverse	35	76	19	31	76	17	72	21	99	26
GGGATTAACGCCCCCG	ref_5261_reverse	15	23	24	18	12	14	15	8	21	18
TTAGGACACCCATCCA	ref_5261_reverse	1	9	4	3	6	2	4	4	5	0
GATGGCGGACTGGTGC	alt_5261_reverse	2	4	2	1	2	1	0	3	3	1
GCTTGGGGCTGTATCA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTGCACCAGCTAT	ref_5261_reverse	43	35	37	37	54	32	60	31	52	34
GTCGTAAGGCGAGGTC	ref_5261_reverse	14	10	13	14	10	9	16	14	22	7
CCACCCGTCTTACCCT	ref_5261_reverse	23	48	36	29	48	16	52	26	51	26
TTTTTGTCGGAACGTC	ref_5261_reverse	48	60	57	42	51	41	81	43	77	49
CGGATTTGCATGTAGG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAGGATAAGTTGT	ref_5261_reverse	12	10	13	4	12	4	21	12	9	4
TCTAGGATCATATATG	ref_5261_reverse	3	4	1	0	0	3	2	3	2	0
CGTGGCGAGACAACTA	ref_5261_reverse	6	4	5	11	10	7	9	8	7	5
ACATCGGTAAGCATTA	ref_5261_reverse	13	5	9	7	5	15	8	8	10	11
ATCAATGATAAGGCCC	ref_5261_reverse	0	5	5	3	3	0	1	0	4	1
CTCTCTCCTGTTTCCA	ref_5261_reverse	16	29	25	22	20	21	21	16	23	16
AGCAGCGTCGACCGTC	alt_5261_reverse	101	133	111	98	163	111	194	102	181	97
CGGCATCGGCAGATGC	ref_5261_reverse	10	10	10	3	6	5	4	4	8	5
ATGCGCCGCAGCCTGG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CATGATTTTCTGGAGT	ref_5261_reverse	9	9	15	6	18	4	7	7	8	5
GATCGACTACACATTT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTACTCTCAAATC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCTGTCAGGTCCC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCGTTTTTTTTGT	ref_5261_reverse	0	0	0	0	0	0	1	0	0	0
TCTTGCGTCTTTACAA	ref_5261_reverse	11	22	15	21	24	7	30	6	27	11
GTGCGGCTCATTTTTG	ref_5261_reverse	10	14	23	15	22	16	22	10	16	18
TAGTGCTGATCTGGGC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGTGCCGGGGGTT	ref_5261_reverse	31	39	43	26	36	28	45	27	34	21
TTAACGATGCTCGTGA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGTGATGTGTGGA	ref_5261_reverse	20	43	26	19	37	31	38	13	42	18
GGTCCGAGAGTTGGCC	ref_5261_reverse	47	60	55	54	73	42	79	33	72	39
CTTCCAGGCGTTCTAG	ref_5261_reverse	13	28	10	9	23	12	18	15	25	11
GACAATGTCGTGGCCC	ref_5261_reverse	9	8	13	5	11	4	7	7	10	10
CTTCCCCCACGCAGTA	ref_5261_reverse	7	17	12	6	11	12	18	11	11	4
AACGAATTTTCATATA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGGTTCCTTGTAT	ref_5261_reverse	38	36	47	44	50	36	59	42	61	39
ACGTCCCAGTATGTTT	ref_5261_reverse	25	20	17	18	22	17	22	17	26	12
TTACTTCCTCAGAAGC	ref_5261_reverse	1	7	1	1	2	1	13	2	5	5
CTGTCGGCGTCTCAAT	ref_5261_reverse	4	5	12	2	2	3	5	3	4	3
AGTGCATACTTTTTAC	ref_5261_reverse	14	29	11	17	23	16	32	13	22	6
CGTCTATACGCGACTG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTGTATCTTCTT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCATCTTATGGTC	ref_5261_reverse	5	10	10	6	13	15	12	6	15	6
AGTGGTCTTCTCGGGT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTGATTATTATGTAGC	ref_5261_reverse	53	91	68	59	81	61	89	59	100	68
TCTAGATACTGTTTTC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GAGCAACGGATTCACT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTCAGGGTGGTGT	ref_5261_reverse	12	20	11	11	17	22	34	14	20	15
TTGCTCCGTATGACTG	ref_5261_reverse	15	14	14	9	21	4	9	8	16	11
CGCCCGTAGGGATAAC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCTACATTTAAGCGAC	ref_5261_reverse	5	0	4	2	6	3	2	2	1	2
TCCCGCGTCGTATTGA	ref_5261_reverse	6	17	5	2	17	3	25	6	32	2
GTATCCCGTGACCCTC	ref_5261_reverse	3	6	3	6	5	2	7	3	8	5
TTGGTTCCATCATGGT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTTAAATATGAGC	ref_5261_reverse	8	8	6	4	9	4	8	4	11	7
CGCTTAGCGAGTTTCG	ref_5261_reverse	65	139	95	61	133	68	117	77	142	63
GACGTCCTTAGTCAAG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
AGTGATTAATGGAAGT	ref_5261_reverse	34	42	26	23	37	29	28	16	41	27
AGTTTTTGTTCTTTGC	ref_5261_reverse	11	7	10	14	14	6	7	6	9	1
CCTGGTTAATACGGTT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGCACCAGTACTTGGA	ref_5261_reverse	49	54	65	34	42	34	56	29	71	33
GCACTATACGCTTAGA	ref_5261_reverse	67	89	70	59	99	58	86	53	96	62
TTCTTCTTATGTTCTC	ref_5261_reverse	17	20	17	15	24	16	30	12	29	7
GAGGGCTATATCAGCC	ref_5261_reverse	9	25	16	18	21	11	13	8	25	8
GAATCGATTGGAAGGC	ref_5261_reverse	8	19	16	13	26	14	12	13	25	9
TATTTATTAAGATAGG	ref_5261_reverse	31	26	18	23	28	29	37	16	35	25
TGTATTCAAGGTTGAT	ref_5261_reverse	93	105	109	110	99	99	137	73	135	77
AATCCGCATAGGGGTT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCAATCCGTTGCA	ref_5261_reverse	15	20	11	12	22	12	23	13	21	32
CTTTACATTTTGCTGG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GATGCGGCCAAGGAGC	ref_5261_reverse	0	0	0	0	1	0	0	0	2	3
TCTTCTTTCCGTGCGA	ref_5261_reverse	24	36	29	13	36	29	30	30	42	19
CGGTCGCCCATGGTGC	ref_5261_reverse	0	6	2	2	7	1	9	1	1	2
CGCGTTGTGTCATTGC	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TATCTACGAGGGGGAA	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GCGTAAGGTTAGTCAT	ref_5261_reverse	4	8	7	3	5	6	4	4	7	3
GGTAGATTTGTTTTTG	ref_5261_reverse	37	37	44	23	52	34	52	33	45	19
CTCGCCATGTAGACGT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
ACGCATACTATTGACT	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
GGCATAGTGGCAGATG	ref_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGACCTTCCGATA	ref_5261_reverse	45	81	55	47	76	39	76	24	64	33
GATACAAACCTCCAGG	ref_5261_reverse	1	8	7	4	7	5	12	8	5	9
TAATGTCTTACGGAAT	ref_5261_reverse	34	40	44	35	40	35	46	23	33	43
AAACCCGGAACTCTCC	ref_5261_reverse	21	35	20	21	28	15	28	19	40	14
GATATCATTACCAGCA	alt_6116_new	26	17	16	8	9	11	10	12	10	25
TTTCTGAGCAGCCGAT	alt_6116_new	94	70	127	115	67	100	81	92	89	97
CGCCTTGCGTAGTTCC	alt_6116_new	32	24	46	43	39	38	35	57	30	49
CCATGGGTCTTACTTT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CGGCCTAGCTCACTCG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GACTCGATGCCTGTTT	alt_6116_new	33	29	51	45	30	38	36	29	35	27
CATAATCGTTCCCGTA	ref_6116_new	68	39	72	55	41	60	57	50	34	50
GCTCGGCACGCGGTCG	alt_6116_new	0	3	2	4	1	0	0	0	0	1
CCACTCATAACTATCA	alt_6116_new	142	137	159	153	166	141	166	131	142	122
AAGCACGGGACTTTCA	alt_6116_new	19	22	45	31	15	21	18	23	20	19
TCTCATAGTTTAGCGC	alt_6116_new	27	17	33	27	15	22	21	26	23	28
GGGCTGAGCAGCAGCT	alt_6116_new	2	1	5	6	5	5	0	1	3	3
TTTAGTACCATGGTAT	alt_6116_new	50	30	47	38	33	45	36	39	38	35
TTGCCCGGTTTACCGC	alt_6116_new	36	40	54	37	40	47	35	51	34	50
CTTTTGTAGTAAGACG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GATTCTATGGTGACAG	alt_6116_new	108	81	127	108	61	125	81	106	97	102
AACTTCATGTTTGTTT	alt_6116_new	36	18	28	31	19	30	21	27	17	28
TGTATTCATCTAAAGG	alt_6116_new	51	25	79	45	33	49	33	54	48	41
GTTTGAGTGATTTCCA	alt_6116_new	2	3	6	2	0	3	2	2	2	4
ATACATGGTACTTGTA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TGCGCAGAGGTTCCAA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GGATTTGGGCGATCTT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GCTCTCATGAACCTTA	alt_6116_new	185	152	241	200	144	172	176	209	158	187
TGGCTTTACCCCTTTC	alt_6116_new	21	11	20	18	8	19	6	14	20	20
TTTCGTGGGGCTAATA	alt_6116_new	20	19	14	18	12	21	11	15	11	13
TTTCGTGATCAGTGTC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CCGTGGCCCGATGCAG	alt_6116_new	19	30	12	7	40	15	61	20	40	11
TAGGCTCCGGCACCTA	ref_6116_new	36	87	51	37	87	49	94	34	77	41
CGACAGGGCCCAGCAA	alt_6116_new	30	16	36	17	28	18	26	20	26	25
AACAGAACGAGCACCC	alt_6116_new	83	53	114	97	70	88	54	87	50	81
CATATTCTAGAACAGT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CCCTACTGTTCGTGTG	alt_6116_new	18	32	40	27	28	24	23	26	23	17
ATGCGGGCGGAAGCTT	alt_6116_new	16	13	26	21	14	19	17	19	12	19
GTGACGGTCGCGATGC	alt_6116_new	0	4	3	1	1	0	3	2	4	1
TGTGAAGCGAGGCCTT	alt_6116_new	61	34	57	39	33	56	38	35	30	50
CTAACTCGCGTTTACC	alt_6116_new	2	1	2	3	2	4	6	5	6	1
CATAATTGCTCTTTTT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CGTCTTGCTCAGGCAA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CGTTCCCTCTCATCAA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CCGCCGTTTGACCCCG	alt_6116_new	4	19	5	6	29	6	26	10	15	6
AAGATTTAGCAAAGGT	alt_6116_new	14	2	13	17	9	11	16	12	2	12
CGTAATAATTACGTTC	alt_6116_new	25	20	24	20	18	20	11	18	14	17
GTTTCAGCCTAATTCA	alt_6116_new	20	38	41	39	28	24	24	34	29	22
ATCCAAGTTTAACTGC	alt_6116_new	12	15	11	18	15	12	6	8	5	11
GCCAGTGGGCCCTATG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TAGGATTCAAGGTTCA	alt_6116_new	52	46	67	61	42	51	54	54	47	50
GGTACGTGTTAGTTGC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GAACCGTATTTCATTT	ref_6116_new	0	0	1	0	0	0	0	0	1	2
CACACTTTTTGTTGAG	alt_6116_new	0	0	12	2	0	3	1	3	0	8
TAAAGTATCGGTCCGC	alt_6116_new	18	12	28	15	12	15	8	13	16	7
CATGCTCGTTATCTCG	alt_6116_new	20	9	11	14	4	9	7	17	7	4
CGATTGCCCAGTTTTG	alt_6116_new	36	54	48	54	36	43	41	39	46	30
TACGATTCTAATCCCA	alt_6116_new	125	69	167	105	74	123	92	119	83	118
CCATGGCACTGGCATG	alt_6116_new	60	33	59	52	48	42	38	39	35	50
ATCCTATTCGATATTT	alt_6116_new	37	17	30	27	14	26	15	21	28	24
GTGCCATTAACGCTTG	alt_6116_new	21	9	12	19	11	12	6	18	12	17
TGGGGCGCCCACTACA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CGACAGGCTCCGGTTG	alt_6116_new	42	45	54	66	38	60	51	46	52	31
GTGCATCACGTTTGAG	alt_6116_new	30	37	44	41	38	27	42	33	41	30
ATACTTGCGATTCCTA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TGTTCTTTGTATACTC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TTTACCGGGATTATGA	alt_6116_new	78	76	119	90	63	91	70	66	78	73
TTACGTTAAGAGGCAC	alt_6116_new	21	8	15	11	11	12	8	11	14	11
ATCCAGAATAGCTTCT	alt_6116_new	20	23	27	19	26	20	22	16	25	12
GTTTGCTCGGTTTGCA	alt_6116_new	11	18	29	20	26	18	24	16	19	17
AGTCATATCTTCGATG	alt_6116_new	164	97	213	163	106	145	128	144	120	120
TCCAGAGTTAGGTTTG	alt_6116_new	58	33	61	42	33	30	42	47	42	54
ATATGCCTAATGCGTA	alt_6116_new	30	30	26	23	31	35	21	30	24	21
ACCATCACTCTATGCG	alt_6116_new	73	53	75	72	48	58	66	66	69	48
ACAAGGTCTCCATCTT	alt_6116_new	92	51	141	114	66	79	69	102	69	93
TTTCCATAAGTAGTGG	alt_6116_new	74	49	71	57	49	63	58	42	50	50
GGCTCCTGGCCTCATA	alt_6116_new	24	17	33	22	17	29	9	26	16	23
ACCATATCCTTAAATT	alt_6116_new	18	11	17	35	8	35	13	20	19	20
TTCGGGTTTGTTTTTC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GAACATGAGCGTTAAA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
AGCAAACTTTAATTCT	alt_6116_new	57	42	72	72	51	44	48	47	39	56
GTGATTGCTTCCGAAC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CTGCTTTGGCAATCAA	alt_6116_new	68	59	97	93	70	88	69	87	78	85
GGATGCTGATACTCAA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GGCTCGTACTGCGCCA	alt_6116_new	70	48	59	71	38	63	44	56	57	62
GAGTTAAGTCTCGATC	alt_6116_new	32	27	58	48	17	40	22	27	26	26
GGATTTTCCGGCGGAA	alt_6116_new	79	58	113	69	39	71	51	67	47	56
TGTGGATTGCCCCACC	alt_6116_new	35	29	36	34	27	29	21	33	20	25
CGTCCCGATTTTCTCC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CATACGCTCGCTTGCG	alt_6116_new	45	26	30	38	29	38	24	31	26	29
ACACATGGTTTCGCTT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CTCATTCCCGCGGGGT	alt_6116_new	8	8	10	6	6	6	11	10	5	13
TTGTCGTAAGTGCCGT	alt_6116_new	30	16	39	41	16	31	30	22	18	23
TCCTACGAGCATCCGG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TTCCACGCCTGTCGTT	alt_6116_new	72	55	105	74	48	47	69	67	72	82
TATCGCCTAGTTCTTC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CAGGTAAACTCCTGCA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TTACAACTTCACTCTG	alt_6116_new	67	61	83	72	65	43	36	70	52	89
CGCTATGTTTACGCCG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TTTTCATGTCGATCCA	ref_6116_new	43	21	29	32	16	30	36	32	27	30
CGGATTCTCACTGCCG	alt_6116_new	109	67	116	109	63	89	60	79	74	58
GCACCCATCTAAACAT	alt_6116_new	36	44	61	42	46	54	44	44	36	37
TTGCCTCTCCATGTGG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
AGCACTTGCTACGGCC	alt_6116_new	15	28	24	32	23	26	28	17	20	17
CTTCATAAAAGGGATA	alt_6116_new	35	22	66	47	38	34	34	50	19	35
TACGTTTATAAATCGA	alt_6116_new	43	24	27	42	34	39	27	32	31	37
GGTAAGCTAAACAAGT	alt_6116_new	155	109	231	209	102	164	114	200	137	152
CAGCACCGATTTGTTG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GACCTGTGGTAAGTGC	alt_6116_new	53	35	74	60	50	56	43	55	51	59
GTCTTAAAGTTTGCAC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
ACCTTTCGTAGTCCTG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GGCACCACGTTTCCTT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GGTGCAGGGGGCGACA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
AGTATTAGGTTCTGCG	ref_6116_new	35	18	52	35	27	35	25	42	26	29
CCATCATATGTGAGGC	alt_6116_new	151	110	202	136	86	140	79	128	96	119
CGGCAGTCGCCGGACC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
ATAGGACCAATCTGTT	alt_6116_new	18	7	18	16	3	14	11	8	12	7
TATTTAGCAGACCGGT	alt_6116_new	88	64	110	105	67	99	79	86	69	82
TTACCATGATAATATG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
AGTTCCGCTAGTCTAA	alt_6116_new	12	8	15	15	18	11	9	6	9	7
CTACTATTATAGGTTA	alt_6116_new	24	14	24	9	15	14	10	13	18	10
TACCTTATGTGTGCGT	ref_6116_new	154	174	219	171	159	203	195	165	176	158
CGCCCCCTCGTGCGGG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CAATCTCTATGTTGCG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TCTTTCGAAAGGGGGC	alt_6116_new	15	17	23	29	16	11	8	25	13	21
TACCGTTAACTCCCTA	alt_6116_new	36	37	43	39	38	37	45	30	47	31
AAACTTATGGAGTATG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GGATGCTGATACTCGA	alt_6116_new	16	11	13	17	11	14	11	15	6	9
CGGCGAATGACTCGCT	alt_6116_new	74	49	63	58	58	68	43	57	61	69
CTCGTCCGTTACGCAT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CATTCTTATTCTTACC	alt_6116_new	9	31	8	13	36	15	24	12	38	10
GAGCTAGCAACTCCCC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CTGGGGACGTATGTCG	alt_6116_new	98	106	164	97	88	106	86	105	100	120
CCACGTATGGGCGTTT	alt_6116_new	25	32	31	15	35	18	25	29	23	15
GCTATCTTCTCATGGT	ref_6116_new	19	9	14	17	8	16	9	14	6	13
TAGTTAACTTATTTTA	alt_6116_new	112	73	124	139	74	102	81	98	71	91
GTTAAATGCTCTTCTT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CCGACGTCTTTACTCT	alt_6116_new	5	8	7	9	4	7	5	3	7	4
GCATCATGGGTTTACG	alt_6116_new	39	31	48	42	36	44	31	51	29	44
TGTTATCGTATCCTGG	alt_6116_new	56	23	35	34	29	30	32	33	24	24
CTGTGAACCCCCTTGC	alt_6116_new	67	54	94	89	64	84	50	63	55	74
GCTTTGACTACGAACG	ref_6116_new	36	37	52	42	32	29	24	32	35	40
TTGCTGAGTTGTCCTG	alt_6116_new	41	18	26	25	21	32	26	34	22	23
AATTCCAGCTATGACT	alt_6116_new	12	8	11	13	8	10	6	12	10	6
CCTCTCCAATTTTTCA	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TCGGGGACCTGCCTCG	alt_6116_new	2	1	1	0	0	2	0	1	1	1
ACGCAAACACTTTGAC	alt_6116_new	9	9	11	16	7	15	11	12	10	12
TCGTTGGAACGTATAA	ref_6116_new	184	151	281	214	101	174	150	180	136	153
GAGCTAGACGATATTT	alt_6116_new	77	57	61	61	56	57	50	64	47	53
TCGGTTGGAGCACGTT	alt_6116_new	34	34	42	32	24	27	33	42	28	39
AACTCATTCATCTAGC	alt_6116_new	27	17	23	22	21	26	23	26	18	23
GACTGGTGGGTAGCTG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
AACGCACGTTTCCCAT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
GTTTCATGATCAAACT	alt_6116_new	58	36	47	28	35	44	30	40	31	43
CGAGTGGCCTTTAGGG	alt_6116_new	7	0	4	3	2	4	4	5	3	3
CCGAGAGCAACAGGTC	alt_6116_new	38	50	51	31	68	36	78	33	72	42
CTTACTACAATAGGGG	alt_6116_new	65	59	60	49	35	62	45	57	45	61
CCACTTTTTATCATGG	ref_6116_new	9	8	15	9	7	10	17	12	5	10
ACTGCTTGTCATACTT	alt_6116_new	8	4	5	8	10	5	18	5	13	2
CCTGGGCGTAGTTTTT	alt_6116_new	18	26	27	29	17	17	18	21	15	17
ATCTCATTGGGCTAGA	alt_6116_new	54	33	63	66	33	26	45	55	50	40
TTGATTTAATTCTGCA	alt_6116_new	27	27	42	64	23	44	29	36	25	24
GACATGATAATGCATT	alt_6116_new	62	44	96	69	52	72	52	67	66	58
GGTTATTAAGGACCCG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TGCCTGGCCTAGTACC	alt_6116_new	9	14	22	14	16	13	10	6	9	11
AAAGGGCATTGGTTAG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TGCTTGTTTTGATTTC	alt_6116_new	0	0	0	0	0	0	0	0	0	0
CTCTTTCCTGATTTTT	alt_6116_new	106	83	174	119	83	109	85	134	89	111
TCTTAGCGCCCTCCGA	alt_6116_new	60	38	68	57	31	40	40	52	46	33
ATGCGGCTAACCTCTG	alt_6116_new	16	9	16	15	13	12	8	10	17	14
AGCTCTCGATTGAGTG	alt_6116_new	0	0	0	0	0	0	0	0	0	0
AAAACTTTTGTCACCG	alt_6116_new	3	1	3	3	3	7	0	6	2	2
AGCCCTGGTCCCCGCG	alt_6116_new	10	16	15	14	17	5	10	9	17	2
GGTTTGGATCTTTACC	alt_6116_new	25	12	44	23	25	25	12	27	15	18
CGCGACCTTTTTCGCT	alt_6116_new	317	237	392	374	256	307	279	318	238	305
TCCTTTTGTCGTTTTG	alt_6116_new	12	8	14	14	10	16	11	9	8	10
TCCTGTGCACATAGTA	alt_6116_new	19	5	23	26	13	26	7	9	11	16
GTAACTGTGCTGCTGT	alt_6116_new	357	214	408	364	219	338	234	344	249	275
TAACTAATCGTCATTT	alt_6116_new	26	16	36	36	28	22	17	27	25	25
TCCAATTCCTCACTAT	alt_6116_new	0	0	0	0	0	0	0	0	0	0
TCTATAGTTATTGATC	alt_6116_new	67	61	65	61	48	67	61	62	67	53
AGAGATAGTATTGATC	alt_6116_new	73	39	93	60	49	56	54	86	75	56
TCTCAGCCGTTTGCTA	ref_541_negative	0	0	0	0	0	0	0	0	0	0
CCGATTGATAGATGGG	ref_541_negative	26	38	33	26	25	22	44	23	46	20
CATTTCATGAAGTTAC	ref_541_negative	95	110	114	94	118	87	123	81	117	65
GAGGTTCTGACTATAC	ref_541_negative	14	30	19	21	29	23	16	18	29	13
CGATTCGGAGGTGTCG	ref_541_negative	23	31	41	16	34	13	27	19	18	24
TGTACTCTCCTAGTCA	ref_541_negative	2	7	4	5	6	1	8	1	8	0
GTACCGTTTCACGTAA	ref_541_negative	22	33	33	39	40	25	45	22	32	25
CGGGTACTTAACAATC	ref_541_negative	14	5	13	10	7	8	9	12	14	9
TCCCTTTGCTAGCTTC	ref_541_negative	8	11	13	17	16	5	25	9	23	11
TAGGGCTTCCCTCTCA	ref_541_negative	89	117	113	75	119	93	123	88	119	92
TTAACTTCGACCATGT	ref_541_negative	43	65	49	46	65	38	63	40	61	34
CACTCTTTGGTATTAC	ref_541_negative	0	2	1	0	6	0	1	3	6	0
AGCGATTCTGTCACAC	ref_541_negative	6	13	12	11	13	6	10	8	18	8
ATAGTAACTATGTTCG	ref_541_negative	11	9	10	10	11	6	7	11	12	8
CTCATTTCACTATTTC	ref_541_negative	0	0	0	0	0	0	0	0	0	0
AGGTGGGTCACATGGG	ref_541_negative	34	43	37	28	43	35	34	29	26	38
GCACGAACGGGCATGT	ref_541_negative	20	23	20	26	22	9	14	14	19	19
CCTCTGCCCGGTAGTG	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TTATCTACTTAGGCCT	ref_541_negative	0	0	0	0	0	0	0	0	0	0
AGGTAGTACCGAGCTG	ref_541_negative	20	18	29	11	22	13	21	13	13	16
TCTATGACGGTCGCGG	ref_541_negative	0	0	0	0	0	0	0	0	0	0
GAGTTCTGGCTATCTT	ref_541_negative	18	29	25	15	38	18	34	17	23	21
GCGTCTCTCGTTTGCG	ref_541_negative	54	60	47	46	41	29	47	37	46	28
ATCCTGCGACGTGTGG	ref_541_negative	19	33	20	32	35	18	27	17	44	19
ACGGCATGTATACATG	ref_541_negative	19	37	28	30	23	20	27	27	30	27
AGTTCTGCTGCCGCTT	ref_541_negative	31	55	48	35	64	30	62	24	40	40
TTCTTAATTGTGTTGT	ref_541_negative	66	69	84	74	75	58	73	46	69	53
CCCGTTGACCATGGTG	ref_541_negative	38	58	30	30	43	21	57	21	69	19
CGAACGTCTGGATGAC	ref_541_negative	32	36	30	27	55	29	36	23	26	17
TTTCATGGTTACTATA	ref_541_negative	12	13	18	16	18	13	17	8	24	11
TGAGGGCATACTCCGC	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TAATTAGTAATCTCCG	ref_541_negative	22	15	18	23	15	18	23	17	17	17
ACTTGTGTCCTCAATC	ref_541_negative	102	166	124	107	183	96	195	112	186	118
TAAAGTTCGCCCTGCA	ref_541_negative	5	7	5	7	5	4	8	2	5	5
ATTAGAGTCAGTGGGG	ref_541_negative	7	13	5	4	11	5	8	6	15	3
CCAGGATTATAATATA	ref_541_negative	5	5	3	4	9	2	6	4	11	8
AACGACTTCGGTTTGT	ref_541_negative	14	29	11	26	23	16	25	20	26	21
GACCTACGTAACTCTC	ref_541_negative	14	17	10	4	15	15	21	5	14	10
CTTTCATGAAACACGA	ref_541_negative	6	8	6	11	8	6	7	7	10	4
ACTGTCTTGGTTCCGT	ref_541_negative	77	94	71	68	100	65	76	61	92	55
ATCCACGATTCTCGTA	ref_541_negative	2	2	0	1	2	4	1	1	3	2
CAGGCATACGGCGTTT	ref_541_negative	5	9	9	5	12	11	12	6	10	4
TTAACCCTCCTCCTGT	ref_541_negative	26	24	31	25	28	28	33	24	24	34
CTTGCTCGGCCCACGC	ref_541_negative	20	31	35	37	43	24	39	30	46	14
TTTGTTGGGATACGGG	ref_541_negative	25	40	30	37	34	20	30	23	39	20
TAGTTATTGAGGCCTC	ref_541_negative	21	36	25	22	29	30	28	22	26	25
GGCGAGTCATTGTTTC	ref_541_negative	20	45	30	28	35	21	35	25	30	9
TGGGGACTACAGGTAG	ref_541_negative	46	41	49	40	51	32	53	28	57	34
GACCTAATGTCGGAGA	ref_541_negative	33	31	25	27	32	17	16	11	29	16
ATTCACATGTCCTGTT	ref_541_negative	0	0	0	0	0	0	0	0	0	0
AAGTTCGTACGTGCAC	ref_541_negative	30	29	30	27	55	38	55	29	42	28
CCTGCCTCTGTTGAAC	ref_541_negative	1	9	0	1	8	0	9	1	11	0
TTGCCTGCAATCGGGT	ref_541_negative	3	22	11	16	13	11	6	10	13	9
ACTTCGCAGAGAATCC	ref_541_negative	14	31	26	20	22	22	18	16	27	15
AGGGGGGAAATCCTAG	ref_541_negative	9	12	9	5	19	10	11	9	16	21
ATATGTACTGTGGAAA	ref_541_negative	5	9	5	9	3	9	5	4	13	3
GCAAATTGTAGACACC	ref_541_negative	101	136	108	113	128	109	130	105	128	89
TTGTTTCTCGACCGCG	ref_541_negative	95	94	116	77	104	86	104	81	94	68
ACCTAGTCAAGGGCAG	ref_541_negative	44	100	64	57	136	67	108	63	106	59
GCGATTTGCACTGGCG	ref_541_negative	65	80	67	64	71	58	87	38	93	51
TGGGATCGTCTACAGT	ref_541_negative	14	17	17	10	22	17	14	15	24	10
AAACCCTTCGGGTCGC	ref_541_negative	42	51	37	43	45	33	61	25	58	32
TCCCACTCACGGCAGT	ref_541_negative	7	29	12	17	24	5	44	8	28	2
CCCCCGGTCACGCAAA	ref_541_negative	138	200	171	115	201	118	170	119	219	101
CGCTGGGTTGCAGCAG	ref_541_negative	166	195	194	181	225	133	229	151	260	156
ACATGCGTATAAGATA	ref_541_negative	0	0	0	0	0	0	0	0	0	0
AATGAATCTGCTCGGC	ref_541_negative	57	77	60	63	72	59	93	51	90	53
CCGTTATTTCACCCCA	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TTTCTTTGCTCTCCTT	ref_541_negative	2	8	12	7	7	4	13	5	17	12
CAAGCTATCCCCAGAC	ref_541_negative	9	25	17	20	28	10	30	13	18	8
TTCTTAAGGGTCTATT	ref_541_negative	46	57	44	36	57	45	40	21	63	26
CTTCAAGTACCGTTGC	ref_541_negative	11	16	23	5	17	16	26	9	21	7
TACGGATCGCACACAC	ref_541_negative	12	9	5	11	14	7	10	6	14	8
ACACGTTGGTTATGCA	ref_541_negative	10	9	9	13	8	11	12	9	10	5
GTGGCCCTCCTAGACC	ref_541_negative	0	0	0	0	0	0	0	0	0	0
GCATAAGCCCGGACAA	ref_541_negative	8	8	10	13	10	7	4	3	14	8
TATCTTTGTCATTTCG	ref_541_negative	6	10	6	4	7	12	10	8	6	10
CGAGATTCCCGCACTT	ref_541_negative	0	0	0	0	0	0	0	0	0	0
ATTCACTCGCTACCAT	ref_541_negative	2	5	6	0	10	6	1	4	11	5
CCTGACAGGTGGAGCA	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TTTGATGCGTTGGCTG	ref_541_negative	0	0	0	0	0	0	0	0	0	0
AATTTTTTAAGATTTT	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TCCTCAATTATAGGGG	ref_541_negative	30	36	35	39	38	27	33	32	45	21
TTACGTCCATTCTCTT	ref_541_negative	8	16	12	6	14	5	6	8	5	10
GGCTATAATACGCGCG	ref_541_negative	73	96	96	74	96	84	99	77	93	78
CGCCTCATCTTACGGT	ref_541_negative	47	68	63	56	67	45	72	60	73	52
CACTCTGTAGCTCCCC	ref_541_negative	16	9	9	13	16	15	23	7	21	12
GGATCGTCTTTATTGC	ref_541_negative	0	0	0	0	1	0	0	0	0	0
CGGATGCTCTTGAACC	ref_541_negative	23	33	18	24	38	21	63	14	50	13
CAACCATCACAGTCAG	ref_541_negative	0	0	0	0	0	0	0	0	0	0
GCCTCATCACTGTCTT	ref_541_negative	6	9	13	9	16	10	10	12	17	7
ACGATTCTGGTGCCCT	ref_541_negative	25	26	16	14	24	11	27	13	16	10
ACGGCTTGTTTAGAAA	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TTTGGTTTTGTTGTAA	ref_541_negative	0	0	0	0	0	0	0	0	0	0
AGACCCTGCCCATCAC	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TTGTACTCCTGTCTAT	ref_541_negative	36	84	45	38	67	42	72	33	78	21
CGATTTTAGCTTCTAG	ref_541_negative	12	9	14	9	12	10	13	10	14	6
TTTACTGGACTATGTC	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TAACTCGTAGGTTAGC	ref_541_negative	10	18	6	15	10	7	12	9	6	6
GAAGGGATCTGACGTC	ref_541_negative	10	19	14	10	12	10	15	13	20	3
TACTGGCGAGATCTAT	ref_541_negative	0	0	0	0	0	0	0	0	0	0
TCTACGTCGATTGATA	ref_541_negative	17	33	14	12	32	15	22	14	40	10
CCCTTGCATTATGACC	ref_541_negative	10	10	5	11	4	6	5	4	11	11
TTCAACGAAGCTTAAT	ref_541_negative	18	25	21	22	28	23	37	10	26	8
AATTGAACGTTGTTCC	alt_5548_missing	169	111	185	152	101	163	112	141	98	156
CGGTTATCGATAGATA	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
GTCTCTTTTTGTATAC	alt_5548_missing	6	7	12	11	12	9	10	7	8	13
TACATCTTATCCTTTT	alt_5548_missing	126	50	115	114	70	99	65	88	51	95
CGCATTCACGGGGGAC	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
GCGCTGAGTGTCGTAT	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
TTCCTGAAATCATTGA	alt_5548_missing	23	19	23	22	5	15	7	22	13	15
ATACTTAAGAACTGGC	alt_5548_missing	41	45	71	53	22	33	43	41	24	41
GTTCACTCCGGATGGT	alt_5548_missing	1	7	2	2	7	1	4	3	6	7
GTTCTTGTTACGTGAC	alt_5548_missing	109	60	86	86	78	107	64	83	53	79
AAGCGTTGAATAGAAT	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
GGTTATTCCAGGTTGC	alt_5548_missing	1	2	1	7	0	5	0	5	2	10
CTGGTATTTTTTGTGC	alt_5548_missing	70	184	59	62	252	43	205	67	233	59
CTGAATAGGATGTTTC	alt_5548_missing	35	42	76	43	38	47	54	49	44	38
AACGTGGGGCCCGCGT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
CCCCCCCGAACGAACT	alt_5548_missing	18	17	18	14	26	11	33	13	16	14
TGGTTTTTCCACGTAC	alt_5548_missing	103	71	114	90	61	86	74	107	71	83
AACGTGGGAGTTTTTG	alt_5548_missing	67	66	109	124	68	73	49	93	52	94
GTAAGTCTCAGTCGAG	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
GAGTTAATCCGATCGC	alt_5548_missing	235	122	315	227	165	226	191	209	192	197
GCCGATGCTCAAACTT	alt_5548_missing	120	82	169	147	83	117	78	122	88	116
TGAGCTGGTTATCACT	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
CATCTAGTATTCATCG	alt_5548_missing	58	61	69	38	74	58	45	59	44	49
AGGGTTTAAGCTTCGC	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
CGTAGTTTTGCAGTTC	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
ACGCTTTTCTTCGAGT	alt_5548_missing	203	133	226	218	144	219	139	217	161	201
CCTCCATGACATTAGC	alt_5548_missing	85	40	100	60	52	77	39	47	54	64
ATTTTTTAGGTAACGG	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
CACGATACCCTCCGGT	alt_5548_missing	70	52	92	105	66	82	82	71	59	69
CACGTCACAGTCTCGC	alt_5548_missing	110	85	160	111	62	108	82	80	101	113
GGTCTAGATTAAGGAT	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
TAGACATTGATTGCGG	alt_5548_missing	69	41	78	61	36	60	45	63	40	63
TGATTCATATACTCGG	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
GTCAGGCAGGGTTGAC	alt_5548_missing	277	168	364	297	192	285	217	264	212	250
TTCTGCCCAAGCTAGA	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
TCAACGATCTTTAGTT	ref_5548_missing	32	25	51	31	31	36	27	38	33	33
GTGTTCGAGTAATTAA	alt_5548_missing	187	108	225	209	134	188	134	182	138	174
CTCATTATGCATTTAC	alt_5548_missing	8	11	13	18	16	8	16	10	12	8
ATGTGGTCCTTGTTAT	alt_5548_missing	28	11	37	25	31	27	28	33	26	39
CGGCCAAGCCATGTTA	alt_5548_missing	33	20	35	29	13	31	16	22	17	17
GTGGCGGAGCACCTAA	alt_5548_missing	22	13	19	22	13	17	11	21	13	11
CATTGTGGTGTTTCGT	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
TCAGCGTCTGAACCGC	alt_5548_missing	116	96	171	128	93	137	100	128	93	129
GAAGTTAGGCACGTTC	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
CTTGTATGTCTGTCAA	alt_5548_missing	11	8	14	13	6	12	14	10	11	9
CTGGCTCCATCTCGCC	alt_5548_missing	17	39	23	26	39	28	47	20	41	24
CACCGAAAAACGCAGG	ref_5548_missing	342	205	435	419	240	318	213	316	258	366
GGCTTGTATTTAAGGC	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
TTCCGCACTAAGATTG	alt_5548_missing	36	23	53	42	16	41	31	44	17	33
TACCTGTGAAGAATCC	alt_5548_missing	11	10	14	9	4	9	5	8	5	11
TCTGATGCGAGCATAC	alt_5548_missing	23	14	27	15	12	20	8	16	15	15
TGTTGTTGATAGGTCA	alt_5548_missing	16	12	25	20	17	24	18	20	17	19
TAGTTGTTTTAAGCAC	alt_5548_missing	102	77	110	93	70	112	83	89	75	96
TTTTTTATTACCGCGG	alt_5548_missing	18	16	29	15	9	9	19	24	22	15
TATCGACTATAACTTT	alt_5548_missing	33	25	48	33	25	23	17	26	26	28
CCATTGTTAAGGCGGC	alt_5548_missing	96	65	107	87	57	98	57	71	72	86
CTCGTCGGGTGTTACG	alt_5548_missing	1	0	2	2	0	2	1	1	2	0
AATGCATCCTGCTGTC	alt_5548_missing	32	13	38	33	28	41	21	35	28	39
CATAAGTTCTTTGGCG	alt_5548_missing	10	6	23	14	10	12	13	17	12	13
CGTATCATACAAGGGA	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
TCTCAGGCTGCAGGGA	alt_5548_missing	34	28	31	34	20	36	20	22	17	30
TACCTCGTCGTTTGAA	alt_5548_missing	3	1	0	6	2	2	1	3	2	4
TACAAGACGTATGGTT	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
CCAGGGGTTATCTTAT	alt_5548_missing	94	75	119	81	83	82	64	130	71	90
TGTTTGAGCGGCGATC	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
TAGCGTGGCTCAAATC	alt_5548_missing	30	21	43	36	23	17	36	43	25	24
CCATACCTTTCGTTTC	ref_5548_missing	127	96	170	132	108	124	114	166	98	125
CGATGAGTTTACTGGC	alt_5548_missing	9	3	3	7	9	6	0	5	4	9
CTTAACGCCCTTCCGG	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
AATTTGAACAGTCTAA	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
GGGGCTTGTGCCATTG	alt_5548_missing	0	0	0	0	0	0	0	0	0	0
GTATCCAGTGCTTCGA	alt_5548_missing	149	109	161	159	88	135	134	144	99	133
CTCTGAATTGAGCATC	alt_5548_missing	32	22	44	34	34	42	34	38	25	27
ACTTCGTCTCCCAGGA	alt_5548_missing	34	36	39	35	23	20	23	28	24	30
ACCCCTATTTCCCATG	alt_5548_missing	121	87	126	145	87	100	88	126	78	84
GCTGTCATCTCCGATA	alt_3966_upstream	2	3	6	4	1	1	1	3	4	1
AATGTAGTACGCGCTG	alt_3966_upstream	9	13	9	12	21	12	14	9	8	12
ACCGGGGCCCTATGGG	alt_3966_upstream	41	48	42	26	42	20	45	33	29	32
TCAGAAGAATAGGTCC	alt_3966_upstream	0	0	2	0	0	0	0	0	0	1
TACTATAAAACTACTT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTCCACTGCGGCG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGAGGAGAGCCAT	alt_3966_upstream	11	16	16	15	9	11	19	16	26	9
GAACGCGAGTAAACGC	alt_3966_upstream	2	0	2	3	2	2	2	3	1	2
CGCGAAGGTTTCCTGG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTTTCTGTAGCTA	alt_3966_upstream	18	36	44	24	27	26	33	25	33	22
TTAGGCATGCATCGGA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGTTTGGTAGCGC	alt_3966_upstream	39	36	54	46	54	41	41	27	43	32
CAGTCCTGTGGCGCTA	alt_3966_upstream	193	170	191	159	174	157	211	171	182	152
GTCCCAAGTGTTTGCT	alt_3966_upstream	1	2	3	3	5	2	0	1	7	5
GCCAGAGGCCCCCCCC	alt_3966_upstream	16	16	17	21	24	18	18	17	14	8
CGCTCATTCCAAATAT	alt_3966_upstream	16	31	18	9	24	12	19	20	22	18
CTAAGCGTAGCGCGAT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGGACCTTGTACC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTGAGGTTTTTTA	alt_3966_upstream	53	47	46	50	41	54	57	46	51	32
CCGATCCTCTTACACG	alt_3966_upstream	18	21	15	17	28	23	30	14	27	25
CTTCCCATATCCCCTC	alt_3966_upstream	41	69	81	62	52	47	77	73	59	80
CAACTGCTAAGTGTCT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
ACATAATTTTCCCTCC	alt_3966_upstream	116	114	133	105	72	94	102	109	97	101
CGAGTTTCCATGGTTT	alt_3966_upstream	22	30	38	28	28	19	38	30	30	25
CCTGTATGCCGGTAAC	alt_3966_upstream	53	54	70	60	60	48	78	43	71	48
TGCAGCGTGTAGGTCC	alt_3966_upstream	42	48	46	18	39	32	44	42	31	28
ATAGTCTTTCGCTGGC	alt_3966_upstream	11	12	12	7	8	11	13	8	5	7
TGGCTATCTGCTTAAT	alt_3966_upstream	55	58	53	40	29	28	70	24	44	38
AGTGCCGGGCATGGAG	alt_3966_upstream	7	4	12	3	6	13	4	5	10	4
GCACACCTTTACCCTG	alt_3966_upstream	146	166	179	174	163	137	161	133	160	153
AATAAGTATCTTACTT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CAATCCATCCGACGCC	alt_3966_upstream	2	5	1	0	6	0	7	3	7	2
AATTATGCTGTAGTCA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GATGCTATGTCGTATA	alt_3966_upstream	50	34	30	35	38	46	50	32	55	25
GTGTGCTTGTTTGTGT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAAATGCGAGTGG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
ATGTGGACCCGACCTT	alt_3966_upstream	53	87	55	63	87	50	66	67	85	68
ACTCAACCCAGTACGG	alt_3966_upstream	90	108	98	111	111	90	119	94	131	69
CCGCTCACCAGTGATT	alt_3966_upstream	1	5	2	0	4	2	1	0	2	2
AACAGTGCCGGGTTGC	alt_3966_upstream	68	66	77	60	58	57	59	56	75	65
CCTTTTCTGGGCACAT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GTTTACGTTCTTCTTT	alt_3966_upstream	16	9	32	30	11	22	12	32	15	19
ATTATTTTCGTGTCAC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTTAACGCTACTC	alt_3966_upstream	2	1	0	1	1	0	0	1	0	1
GTCTGCAACTCCATAC	alt_3966_upstream	27	22	16	23	20	13	26	30	23	19
TCTCAGAGGCGCTCAC	alt_3966_upstream	74	102	75	53	101	72	115	82	117	52
ATTTAGAGTAGCGTCC	alt_3966_upstream	29	24	24	31	28	18	36	12	23	14
CTGTGAACATGACTAT	alt_3966_upstream	26	22	24	22	37	20	31	19	34	10
GGGATCAAGTTCACTT	alt_3966_upstream	39	32	43	37	27	28	23	24	29	28
AACGAGCTGCTGAAAC	alt_3966_upstream	34	36	45	42	48	40	35	32	32	37
AGTAACTTAAGACGAG	alt_3966_upstream	152	166	173	180	151	166	165	146	180	130
GCGTAACGGAATTGGC	alt_3966_upstream	13	13	18	9	20	22	20	10	15	12
TTGAGATTGTGTGCAC	alt_3966_upstream	33	30	31	38	34	29	38	32	39	25
TAGTGTCCGATCCGTT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
ATACTAACGTGTAGTT	alt_3966_upstream	31	39	41	32	34	25	44	32	40	23
CCCAGTTCAGTTTAGC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTCTAAGAGCAAA	alt_3966_upstream	36	56	44	45	39	42	34	46	57	44
CCATCTCGGTTATGGC	alt_3966_upstream	89	84	139	111	133	123	135	121	142	103
TTTTTGGAGCGAGCCT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTACCGGATCTGGTGT	alt_3966_upstream	10	3	17	4	8	3	3	6	16	7
TTGTTACAATTTAACT	alt_3966_upstream	118	112	157	149	125	115	158	117	133	114
AGCTATCTTTTAAATA	alt_3966_upstream	4	10	12	3	7	7	4	6	5	6
GCCCTCGCATGTTCCA	alt_3966_upstream	25	28	41	42	29	25	43	37	43	35
TTTCAAAATTGCGGGA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTTTGTCGGGAG	alt_3966_upstream	1	4	4	1	4	0	2	1	2	2
GCCGCCACAGTCGGGT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGGTCCCCGCTGG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CACGCATCGCTTACAA	alt_3966_upstream	20	31	24	7	17	21	23	11	11	23
TACTCGATGTCTGAGT	alt_3966_upstream	36	39	36	30	37	32	44	30	32	24
GTTGCGATTTACCTTG	alt_3966_upstream	47	78	64	51	64	41	71	40	74	43
TTGTCCGTAAATGAGT	alt_3966_upstream	124	131	128	88	137	109	165	98	159	104
TATTCTTTCCTCCATA	alt_3966_upstream	2	6	8	3	2	2	3	2	5	3
GATACTGTTGCTCTCT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
AGCCGGCCGGTGAACA	alt_3966_upstream	10	10	16	17	18	11	15	21	15	8
GCGCGTGTCAACCCTC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTTTCGTGGGTAT	alt_3966_upstream	6	11	11	10	9	9	10	11	6	13
TTCTGGTTAGTACATA	alt_3966_upstream	5	11	10	3	7	0	16	8	13	2
AGAAACTTAAGACGAG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
ACTACCCGTTAACACG	alt_3966_upstream	33	40	36	46	40	33	44	37	36	38
GTTTTTTAAACTTATG	alt_3966_upstream	11	12	14	13	11	14	13	10	21	14
ACTAGCCTGGGCCCTG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAGCCGTAACAGG	alt_3966_upstream	34	29	46	33	36	33	45	36	56	23
TTGTCTATCCATGGGG	alt_3966_upstream	16	9	19	22	11	14	9	18	15	12
TGGCAATTTGCGTCTC	alt_3966_upstream	15	16	17	12	15	13	17	6	16	12
CTACTTTTGTTTGTGT	alt_3966_upstream	36	24	42	46	38	37	30	43	32	31
TGTAACTCGTAAATCT	alt_3966_upstream	26	27	25	27	31	20	24	27	35	12
AATACTTGACCGCCTA	alt_3966_upstream	24	19	34	34	27	16	30	33	24	22
GGTTGGAACGGACTAT	alt_3966_upstream	58	60	77	76	69	61	64	51	55	52
ACCGGTCTTTCTTGCA	alt_3966_upstream	27	76	35	38	94	29	63	40	77	31
TGAGGTTCCATTGGTT	alt_3966_upstream	16	24	23	17	17	21	17	17	11	23
GCCTGGGAACATTTAG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGGCCAGTCCGGG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGATTCTGTGACC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TATGCCGTGTAGTTTG	alt_3966_upstream	11	23	10	10	16	16	22	14	28	23
TTGAGATCAGAGCCAC	alt_3966_upstream	43	36	45	47	39	46	50	43	49	38
GTATGAAAGGTACGCT	alt_3966_upstream	8	12	18	9	6	9	9	13	7	13
CTTGTCAGTAGTTCCC	alt_3966_upstream	4	2	4	0	0	3	2	2	7	2
GTAGACAAGGTTAGTG	alt_3966_upstream	39	43	63	51	80	52	41	50	52	29
GGCTCTGCGTAGTACT	alt_3966_upstream	78	97	101	74	97	79	100	73	109	58
ATAGCCTGTTTTGTGG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TGGCACAGCCAATTAA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCACTTCAGGGTC	alt_3966_upstream	1	2	5	0	5	6	4	4	2	3
TACGATAACGGTTTGA	alt_3966_upstream	5	5	9	5	5	7	10	4	3	6
GATACTGTTGCACGGC	alt_3966_upstream	15	10	10	11	8	10	7	6	18	5
CACGGGTTTGCGAGTA	alt_3966_upstream	31	40	31	38	34	19	26	28	42	28
CGTGGTTTCAGTTTTT	alt_3966_upstream	20	25	33	18	19	24	22	25	24	19
GTATAGCTAGCCGTCA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GTTATGGGGGCCCAAG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GCACATCGTCATTCAT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTGGGACCCTTTG	alt_3966_upstream	18	25	29	16	23	27	26	19	18	18
GTTCGGGAATCGGTTG	alt_3966_upstream	41	40	30	21	31	35	21	28	40	34
TTTCGATTTGCCGCGC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCATCGCGTTGCCTGA	alt_3966_upstream	41	43	34	35	39	23	41	39	58	23
ATCCGCGCTCTTTCTC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CGGCACCGGATGCTTT	alt_3966_upstream	1	2	1	3	3	0	2	1	2	0
CACAGCCTTTAAACGC	alt_3966_upstream	24	35	23	21	41	14	35	21	31	23
TGGTACCCTTCCCATG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TCGGAGCTGGCGGTTA	alt_3966_upstream	16	9	21	15	11	20	18	10	12	13
AGTCTCTGCATTTTAC	alt_3966_upstream	4	3	3	2	1	1	4	2	4	0
TCAGAAGACCGTCCCT	alt_3966_upstream	25	27	51	33	36	40	36	30	45	24
AAGATCCATAGCTCTT	alt_3966_upstream	26	34	33	35	28	30	41	19	31	21
CCGCACGGATCCTGTG	alt_3966_upstream	43	42	59	31	43	38	42	21	34	29
CATTCATAATGCTTTA	alt_3966_upstream	29	20	32	25	27	23	30	28	23	30
TTATTCTGCACGTGGC	alt_3966_upstream	17	14	16	15	21	15	18	7	27	19
TGTAAACCATTCATGG	alt_3966_upstream	103	122	126	106	104	100	152	97	129	100
GAATTAATTGGAGGTG	alt_3966_upstream	14	23	7	15	14	16	21	13	19	18
TCATTAGACCGCCTCA	alt_3966_upstream	22	37	44	38	33	25	42	33	19	35
CCTCCTTTCAGACGGC	alt_3966_upstream	34	28	40	41	31	42	31	27	39	32
CATTTTCGTATGCAAA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTGGGTGTTGCGA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTATGGCCGCTT	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
AAGTACCTGTTAGTTT	alt_3966_upstream	5	8	22	13	8	7	12	4	2	3
GGGATAGAACGCCCAA	alt_3966_upstream	36	23	41	39	21	42	31	29	28	32
CCTGTCACCTCGTCGG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAGCTTTTTATC	alt_3966_upstream	18	32	10	12	16	7	27	17	24	8
TTTTGACGGTCCTGTT	alt_3966_upstream	2	0	0	0	0	2	1	8	1	0
CGAGGGATCGATCCAC	alt_3966_upstream	24	22	31	32	40	38	36	30	34	23
GGCTCTGGTTGCCCTC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
CCACTGACCCTTACGC	alt_3966_upstream	16	26	34	26	50	26	32	16	40	30
CAGTGAACGCGGCTTT	alt_3966_upstream	27	40	35	32	30	22	43	31	34	32
CCGGCCTCTAGTCGTT	alt_3966_upstream	23	64	24	27	75	17	70	18	74	17
GGTTGCCTAATGCCCG	alt_3966_upstream	14	12	14	15	21	14	5	16	11	13
AAAAACTGATCCTTCA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
ACAACCTAGGTGCGAC	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTCTTTTTCGGC	alt_3966_upstream	18	27	31	23	19	31	16	21	23	15
ATTTCTCCTTCGTCTA	alt_3966_upstream	20	23	5	7	13	14	21	13	17	14
AGCATATCGCTCGACG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCGTAGCTGCGT	alt_3966_upstream	29	44	30	28	34	24	32	29	21	16
AGCTGTGCCGCAATGA	alt_3966_upstream	15	17	17	19	17	11	24	19	32	11
TTTGTCTTGGTATGCG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCTTTAAAACCAG	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GAGGCTCTATATTAAA	alt_3966_upstream	0	0	0	0	0	0	0	0	0	0
GGGTAGCCACTGGCAA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGATAGTTGTCAT	alt_3643_fdr	8	16	13	12	9	8	13	6	12	6
CTTTTAGTTCTAATTC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTGCACGGTCCTTTTG	alt_3643_fdr	34	49	43	42	34	30	36	37	39	25
TAACCCTATTGATCAA	alt_3643_fdr	22	52	60	43	46	50	59	36	69	31
CCGGTATTGAGACCGC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCTAATATCATCT	alt_3643_fdr	2	3	1	5	0	7	1	4	4	4
GGAATGTCTCCGCCTG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATCAGATGGGTCTTCT	alt_3643_fdr	2	2	7	8	5	3	7	5	4	6
CGTACCCGACAATTTG	alt_3643_fdr	28	39	36	31	48	22	38	26	41	26
ATAGTTAACATGAATG	alt_3643_fdr	18	19	16	13	11	11	22	7	12	8
TCCCACCTGGAATAAT	alt_3643_fdr	8	2	5	2	1	6	6	3	5	0
ATAATCAGAATTACTC	alt_3643_fdr	1	6	3	3	3	1	2	2	1	1
TTCGTTGTTGTATTTA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTACTCAATTACTCGC	alt_3643_fdr	21	23	23	21	22	14	24	23	23	13
ACGCACGTGGTAAGCA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCTTCGACTTCAA	alt_3643_fdr	7	11	11	11	14	11	11	5	13	6
TGAGAGTTAGACGGAT	alt_3643_fdr	17	7	14	13	15	16	10	8	15	12
CCACCCCCTTAGTATT	alt_3643_fdr	17	38	10	17	26	20	29	18	32	16
AACTAGCTGACTCGAT	alt_3643_fdr	24	21	20	16	14	12	35	14	22	14
GCGAGCCTGCTCGATT	alt_3643_fdr	12	6	8	8	9	11	7	4	7	7
TACTTATGCGTGGGAG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGCTATAATTACA	alt_3643_fdr	3	5	7	7	7	7	9	5	8	3
TTTTGCGTTCCATTCA	alt_3643_fdr	33	47	42	23	27	20	37	23	47	25
GAGCGCCGTCAGCACA	alt_3643_fdr	20	31	32	27	26	35	32	13	24	23
CACCTTGGGCGGCACG	alt_3643_fdr	1	4	6	3	6	10	6	2	6	0
CCAGAGTGATAATGTA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTGTACTCACAACTTT	alt_3643_fdr	14	24	19	14	14	21	25	10	20	7
GGCCTTCAGTTAGTAA	alt_3643_fdr	32	35	41	46	30	29	47	20	49	35
AAAAGGTGAGCAAGGC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGGTTAGCACGGG	alt_3643_fdr	14	16	20	21	14	14	11	19	23	17
TACCAATACGTAATGC	alt_3643_fdr	7	22	21	12	16	13	25	15	20	14
TCCTTTGGTGTGATCC	alt_3643_fdr	4	12	12	5	13	9	7	6	6	3
TGAGGGATGGCCCGTT	alt_3643_fdr	21	14	19	20	26	28	12	12	15	15
CGCTAACGCCACTCAG	alt_3643_fdr	2	2	1	2	0	0	3	1	1	4
CCTGATATATTAATGG	alt_3643_fdr	4	4	4	6	9	3	6	7	11	3
TAACACAGTGGATCTA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCGGCGAATAACA	alt_3643_fdr	25	39	20	29	40	14	35	8	38	13
GCCATTTGTGGCATCT	alt_3643_fdr	13	7	3	9	6	10	5	9	10	10
TGGAGTTCGTGTGTTG	alt_3643_fdr	10	8	16	18	8	11	20	7	22	13
TGTTCCCAGTATCAAG	alt_3643_fdr	48	56	84	71	71	62	57	66	86	64
TTTGGTACCTCGGGGT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TATGGGGAATCTCGTC	alt_3643_fdr	9	13	13	4	31	12	22	6	23	5
ACAATGAGGGCAACGA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGTAGCTCGTAAG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTCTAACTTTCTG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTTGTAAGTTAGA	alt_3643_fdr	82	95	98	74	115	65	110	80	117	69
GATATGCTATAAACTA	alt_3643_fdr	19	15	24	17	18	15	18	16	17	16
CGTGCCGAAAGTGAAG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCCAGTCACCCGC	alt_3643_fdr	46	56	57	55	55	48	46	34	65	27
TCTCGGTTAGGAGCAA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTACGCAGCCGAACTA	alt_3643_fdr	11	17	14	19	22	5	17	19	19	9
CGGCGGGCCTGCGCCC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTGTCATTATTCT	alt_3643_fdr	8	13	12	12	16	10	10	8	14	8
GCTTCGAAAGTCGTCC	alt_3643_fdr	132	225	204	156	241	140	189	182	230	163
TCGTTCGCCGTGGAAT	alt_3643_fdr	28	38	45	31	38	29	36	22	28	24
TATCAGCTGTACCTTG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGAACAGTTTTTT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTACGAATTTCGTGAA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCGTTTCCTAAGG	alt_3643_fdr	24	31	33	19	26	12	31	18	29	23
TGGTAAGCATCCCGAG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATATTGCTTTCTGTAA	alt_3643_fdr	49	43	62	50	53	45	75	51	56	34
ACGCAACCTACCTTCC	alt_3643_fdr	6	24	5	4	17	1	22	4	18	6
TATGCGATCAGTGTGA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TACAGATTCCTGTCAC	alt_3643_fdr	5	4	2	8	6	2	7	3	9	4
TGCGCCCGGCCACCGT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCAATGTTTTCGT	alt_3643_fdr	6	4	11	6	15	9	12	6	7	9
GTTACGCTCAGGTTCT	alt_3643_fdr	42	39	35	36	32	35	44	33	24	29
GATTAGCTCTATGTAA	alt_3643_fdr	59	54	66	42	68	54	61	38	57	48
AATAGCCCGTTGGCGA	ref_3643_fdr	33	26	41	31	23	23	25	46	18	36
TTATTGAATCAAGGAT	alt_3643_fdr	25	30	19	27	31	19	32	22	26	20
TAATAAAGTTCAGTAG	alt_3643_fdr	15	13	17	15	18	5	11	17	16	12
TTTTCTAGCCGTCCAT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GTTACGCGCTTTATCC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTAGTTGCTCATT	alt_3643_fdr	7	3	5	7	8	4	4	2	6	3
CTCTATGTTAAAGATT	alt_3643_fdr	28	34	33	41	43	28	38	27	44	22
GTGGTATTCAACATAG	alt_3643_fdr	5	4	10	6	8	8	2	6	5	5
AGTGAATGATTCGACT	alt_3643_fdr	6	5	5	7	8	1	1	4	4	2
TCCCTTGGCTCCAGAT	alt_3643_fdr	44	37	35	33	26	39	35	25	34	36
ACAGTTCGGTATTTGA	alt_3643_fdr	3	8	7	6	8	5	10	4	6	11
ATTATCAGGCAGCCTA	alt_3643_fdr	5	1	3	5	4	4	1	5	11	4
TAGTGCACTTATTACG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTGGTTTCACTGT	alt_3643_fdr	15	24	23	8	18	11	13	13	25	12
TGATTATGTACTCCCT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CCTCATTCTAGAACAG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGGGAATGTATAC	ref_3643_fdr	17	15	16	15	18	21	15	17	15	14
GCACTTGTCGGCATGT	alt_3643_fdr	9	8	9	7	17	5	16	7	15	15
GTTGCGGGCGTTCTAT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GGGAATCAATCTCCAG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAGTCTAGCCATC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CGAACTTTGCTAATGC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTGCACCGGAATGTGA	alt_3643_fdr	4	1	3	1	5	0	2	2	2	2
GTTCGCCATCGTCATC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CGTATGGTACTCGTGC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCCTTTTCGACGC	alt_3643_fdr	75	66	95	71	72	64	64	61	67	46
ACTTTAATATGTTAGT	alt_3643_fdr	12	11	12	23	11	15	19	12	17	8
AATTGCGTTTTGCGCA	alt_3643_fdr	8	17	14	8	13	16	20	9	17	11
TATATTTTAAAGAACC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCACACAAAGATT	alt_3643_fdr	34	37	44	37	46	22	47	28	41	28
CCAGTGACTCTTCCTG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTGGAGGCACATTGAT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGTAGTTAATCCA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTTCTAATCTCGT	alt_3643_fdr	38	34	39	24	31	38	25	34	44	25
CGGTAATCTCTTAGCG	alt_3643_fdr	22	17	25	30	26	17	37	16	43	17
CTCGCAAAACGCACAT	alt_3643_fdr	23	46	39	35	65	21	43	29	57	32
ATGTTAGTTGTACCCG	alt_3643_fdr	1	3	2	0	2	2	6	1	1	1
ACGGTCTTTTATTACC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
GCGACTATCTGTACGG	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGATAAGCATGGT	alt_3643_fdr	13	7	10	10	16	12	7	13	12	7
CATAGTTTCACTCGGC	alt_3643_fdr	27	26	18	16	23	5	27	7	30	19
TGAGGTCAAAGTCCCT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCTCAACCTGTGG	alt_3643_fdr	6	9	10	2	4	4	4	9	11	10
CGTTTCGCACGCTGTT	alt_3643_fdr	8	10	18	16	10	16	8	12	8	12
CTACGTTGTTCCCAGC	alt_3643_fdr	15	25	15	19	9	12	27	15	11	19
ATCAGCCCTCCGGCTA	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTAAGATTCTGGG	alt_3643_fdr	13	28	19	22	20	24	22	18	19	20
TATGCAGAGATATTGT	alt_3643_fdr	37	41	54	50	55	52	44	40	50	31
CCGGGACGGTCATTTC	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
CGATCTTTGCTAATGC	alt_3643_fdr	59	243	84	77	275	58	254	66	236	65
AGACGGTCAGAATTGT	alt_3643_fdr	99	112	136	101	105	97	127	103	163	99
TCACCTTCCCCGCGTT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATGCAGAACAAGGAGT	alt_3643_fdr	0	0	0	0	0	0	0	0	0	0
TCGAATCCTTTTGTTT	alt_3643_fdr	5	9	16	6	5	10	11	7	16	10
GCATCGTGCAACACTT	alt_5967_new	4	2	4	2	6	0	2	4	1	5
CTGATCTGCTTCAATA	alt_5967_new	25	37	31	18	46	20	41	24	35	26
TGGTTGCGCGAAAACG	alt_5967_new	0	0	0	0	0	0	0	0	0	0
CAATCACAACGAATTA	alt_5967_new	13	17	13	10	16	8	22	9	23	20
CTAAAAAGGAAGAGCC	alt_5967_new	46	89	64	46	105	54	110	45	125	31
TAGGCCTGAACGCCTT	alt_5967_new	0	1	2	2	3	4	4	2	4	0
TCTTGGTATTGAGGTG	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TCGCGTATTTTTCATT	alt_5967_new	21	24	23	13	29	19	26	23	28	21
GCTTGCTTTAAGTAGC	alt_5967_new	52	47	40	43	64	49	47	28	46	36
AGGTAGGAATAGGATT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TATGCATCCTCACGGC	alt_5967_new	0	0	0	0	0	0	0	0	0	0
GAGTGCTTGGACACGC	alt_5967_new	11	10	9	9	8	13	6	12	8	10
TTTGCCGGGGGGTAGA	alt_5967_new	83	67	89	51	88	58	71	68	86	57
TGTGGCGCGCTTGCCT	alt_5967_new	11	11	14	13	15	15	15	11	10	11
GTCATGCTGGTTTTAT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
GATAAAGGAATCGTTT	ref_5967_new	194	248	207	177	271	205	243	173	272	195
ATCGGTAACTACTGGC	alt_5967_new	39	44	37	32	53	39	61	32	62	37
TATCCGAAACCGAGCC	alt_5967_new	39	37	35	32	40	36	46	35	49	37
CATAATCTCTCGAATT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
ATGAGACGTATGGAAC	ref_5967_new	10	17	14	9	14	11	14	5	10	6
TAAGCATTCTAGAACA	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TTTTCCGCTGTTCAGC	alt_5967_new	66	79	71	51	68	48	76	75	102	62
ATGGACCCTCAACATT	alt_5967_new	57	65	71	48	59	52	53	55	59	57
GATAGCACTGATCGTT	alt_5967_new	32	36	38	26	39	37	34	25	50	35
TTTTGGTTCAGACCAC	alt_5967_new	23	19	27	13	33	30	34	23	36	33
ACTGACTTCTACATAC	alt_5967_new	20	31	14	21	29	10	29	12	35	9
TGCGTCAACTGCGGAC	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TATCTAGATATATTAG	alt_5967_new	0	0	0	0	0	0	0	0	0	0
GACGAATCACTGTCTT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TGCTTTCATGAATGTT	alt_5967_new	0	6	2	1	2	5	2	2	2	5
CTCATAGTACGCGGTG	alt_5967_new	14	33	22	23	24	27	20	10	33	21
TTGGATATCGCCTACA	alt_5967_new	0	0	0	0	0	0	0	0	0	0
GATTCCTGACCGCGTA	alt_5967_new	6	14	11	12	9	12	14	14	14	12
ATGACTTGGAATTCGA	alt_5967_new	0	0	0	0	0	0	0	0	0	0
AGTATGGCAGTATGCC	ref_5967_new	9	22	22	14	24	21	33	9	21	18
GGTGATACTTGACCGT	alt_5967_new	17	18	13	9	25	17	20	8	18	16
TCCGGGCGGTCTTATC	alt_5967_new	0	0	0	0	0	0	0	0	0	0
ATCTGGTGGTTGTTGG	alt_5967_new	86	75	98	77	113	76	94	86	103	72
CTTGCCGAGACCCCGC	alt_5967_new	2	3	5	0	5	0	4	1	5	1
TTGGGTTGGCAGGGAC	alt_5967_new	21	28	38	33	35	27	33	20	37	18
CTCACTCAGATGTCGC	alt_5967_new	1	5	1	2	0	1	2	2	1	2
TGTTTTCGAATGAGCT	alt_5967_new	28	40	41	33	40	32	49	27	34	31
CTCAGTTCCGCAGCGT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
AACATCGCGAACGGTG	alt_5967_new	87	83	121	81	100	81	122	61	117	49
GTTTGGGTCTCAAGTG	alt_5967_new	56	65	50	32	46	38	55	43	63	50
TGTGGGCATTCGATAA	alt_5967_new	42	31	44	18	36	37	38	29	43	21
GTACTGCCCATGCTTG	alt_5967_new	15	29	23	16	28	17	31	27	30	13
AAGCAGAACATATCTT	alt_5967_new	3	2	2	1	6	2	1	3	5	4
TATGCATGACCCTGCC	alt_5967_new	0	0	0	0	0	0	0	0	0	0
AACGATGTTCGTTTGT	alt_5967_new	30	40	24	21	38	33	29	22	35	24
GTTTTGAGTATAATAG	alt_5967_new	6	6	2	2	7	2	9	5	10	2
CTATACTGAATTGTAC	alt_5967_new	49	62	63	44	92	49	58	37	77	49
CTCGGAGCCCATTAGA	alt_5967_new	127	191	183	142	261	113	220	132	238	136
GTAAGATCACGTAAAA	alt_5967_new	0	0	0	0	0	0	0	0	0	0
ATTGCTTAATGTTCTA	alt_5967_new	0	0	0	0	0	0	0	0	0	0
CCGGCACTGTGGCTCG	alt_5967_new	98	140	108	89	118	84	134	65	167	76
GTAGCATGCAACACGC	alt_5967_new	5	14	4	9	7	4	8	6	3	5
CGTTTCCCGAACCCCC	ref_5967_new	80	93	102	79	71	58	97	53	89	66
AATCACTCCCACGCTC	alt_5967_new	1	16	0	0	12	0	7	2	12	1
CTTTGGTTCACTGCGG	alt_5967_new	8	34	26	23	28	11	27	7	27	17
TTGTCCGGGGGTTATC	alt_5967_new	26	23	22	18	22	31	19	23	22	17
GGGCCCTCCAATTGGG	alt_5967_new	33	31	42	24	41	20	32	19	34	28
AGTTGTAATCACTCAC	alt_5967_new	6	8	7	3	6	6	12	6	10	7
GGTCTGAACCAATTCC	alt_5967_new	0	0	0	0	0	0	0	0	0	0
GAAAAGTCATATAGAC	alt_5967_new	15	20	28	18	24	12	26	11	30	13
CCGTTTTTTCCGGATC	alt_5967_new	8	6	5	4	4	4	6	3	7	5
AGAGTTTCCTGGTCTT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TTTCGGTACAACGAGT	alt_5967_new	96	73	81	54	76	69	88	50	74	59
ACGTTCATTTCTCTCT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TGGCTTTATATAACAA	alt_5967_new	60	114	75	51	100	43	113	53	98	47
TTTATGCGCATCCTCC	alt_5967_new	3	4	9	0	6	1	4	5	7	6
TATACGCGGATTTAGG	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TCGCAACCGTTGTTAC	alt_5967_new	0	0	0	0	0	0	0	0	0	0
GATTGAGAGAGATGCA	alt_5967_new	12	22	20	13	12	10	15	16	20	19
CTTGGTATTATTACCT	alt_5967_new	4	5	4	1	4	1	2	2	4	4
ATCCTCTCATGTTTAT	alt_5967_new	25	34	32	24	26	19	47	23	40	21
GGTACGGTCTAAGTCT	alt_5967_new	12	14	20	15	23	9	24	12	20	7
TCTTTCTGTCTCATGA	alt_5967_new	81	97	78	58	100	62	101	61	105	66
AGCCAGTTGTCCTCCG	alt_5967_new	0	0	0	0	0	0	3	0	1	0
TTGAACCAACATTGTG	alt_5967_new	2	13	6	3	4	3	2	6	6	4
CGCCGCATGTGGACTT	alt_5967_new	11	17	11	11	22	11	14	6	15	6
AGCGAATTTGTATAAC	alt_5967_new	67	63	65	41	71	66	79	47	71	50
TATCAACTTATGGGAT	alt_5967_new	0	0	0	0	0	0	0	0	0	0
TCAATTTGTCACTGGT	alt_5967_new	41	44	42	34	44	36	32	27	38	38
GCTAGAATGCTATTTT	alt_5967_new	16	5	8	9	6	7	3	3	3	6
TCCAGTCCTAAACGGA	alt_5967_new	0	0	0	0	0	0	0	0	0	0
CGGGCTCGGCGCTTAA	alt_5967_new	65	66	67	42	78	57	84	60	84	46
TTCGGTTACACTCATT	alt_5967_new	7	3	1	2	7	0	5	2	1	5
TTCGCAAGTGATTCTT	alt_5967_new	8	6	12	3	5	5	4	3	9	2
GGATTCGGCCCGCGTA	alt_5967_new	29	53	52	19	48	47	39	33	42	17
ATCTGATTTTTTTAAG	alt_5967_new	0	0	0	0	0	0	0	0	0	0
GACGTTTGCTGCCTGT	alt_4632_reverse	17	28	19	13	26	18	30	12	32	16
TCCTTTTAGACGGCGG	alt_4632_reverse	7	7	7	3	6	3	12	3	13	3
ATGACCGGCTCGCCCA	alt_4632_reverse	11	17	15	13	28	14	21	11	25	10
GCTGCTGTACGATTTA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTATCCTTCAGCATGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGTAGATGCCCTT	alt_4632_reverse	6	31	8	12	21	5	24	5	18	8
CCAGCTCTGAGGAGCC	alt_4632_reverse	3	34	6	8	47	3	43	5	35	5
GTGGGTGCCGTATGCC	alt_4632_reverse	18	36	13	12	45	16	36	16	26	12
TCGTACTCGCGTCAAC	alt_4632_reverse	6	20	14	6	22	5	15	7	25	13
ATGTTTGATTATAGTG	alt_4632_reverse	17	16	10	9	27	12	21	11	28	10
AATGGAATGGACCAGT	alt_4632_reverse	3	8	2	5	6	4	9	2	11	2
CCTCTTGCCGTGGTTC	ref_4632_reverse	58	69	34	31	84	41	96	36	77	45
TTACCTACCAAGATGG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GCGAAATTTCCAATGC	alt_4632_reverse	50	88	53	45	93	43	86	54	78	27
AACGGGCGAACATGGA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GATCTTCAGGCCTTGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATACCGGGTAAATCAT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTAGGTCATTGCT	alt_4632_reverse	13	57	16	18	43	29	40	20	51	23
GTCGGCACGGCTTTAG	alt_4632_reverse	10	22	14	12	20	18	21	16	23	10
TGAGCAAACCTAACTC	alt_4632_reverse	0	2	2	1	0	0	0	0	0	0
ACTTAAACAACCTTGT	alt_4632_reverse	14	19	8	10	18	2	14	11	11	11
ATGTGCGCGCTGTACT	alt_4632_reverse	1	6	1	2	8	3	3	0	8	2
AAAGCCGTAAGACCCG	alt_4632_reverse	41	137	53	61	118	57	127	54	123	56
GTAAGCCTTCGCTCCT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TATCATTTTCCCGCGC	alt_4632_reverse	11	17	21	14	32	15	35	15	26	10
GCTCCTACTCTCAGTT	alt_4632_reverse	33	94	40	43	87	46	74	45	100	28
ACATCAGAAGTTCCGC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTTATGGATATTGAGG	alt_4632_reverse	14	28	21	18	42	27	25	19	31	19
AATAGGCGTAAATTCC	alt_4632_reverse	16	24	15	7	31	8	27	13	18	9
TGTATACTTCATCCTT	alt_4632_reverse	9	25	12	6	28	7	20	5	23	11
AGTTCACTATGTATCT	alt_4632_reverse	6	4	5	2	4	2	13	3	9	2
TCTGATTGATCGTACA	alt_4632_reverse	27	57	34	26	46	30	68	29	55	34
AAATGAGCTTATCCGC	alt_4632_reverse	0	5	4	0	3	3	4	1	1	6
TATTTATGAAATACCT	alt_4632_reverse	0	4	2	0	0	0	1	0	1	1
GTCCTAACTCCGGAGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TGCATCTGATGGACGG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TATCTAGGATACCCTG	ref_4632_reverse	13	23	13	10	23	7	39	15	24	3
TTAGATATGTGTCCAG	alt_4632_reverse	3	6	7	7	8	3	10	3	6	1
ATTACTTCCTTTACAA	alt_4632_reverse	13	25	11	12	26	17	21	6	25	15
TTAAATAGTGTGACGG	alt_4632_reverse	6	13	5	4	16	5	13	5	15	4
CCCTAACGTGGCCATA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTACGTTGAGTTT	alt_4632_reverse	20	57	35	22	46	26	41	19	44	15
GGTATCGGGGGAGAAC	alt_4632_reverse	3	10	5	6	6	3	7	6	3	4
CTTCATTACAACCCAT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ACCAAGCACAGAGTCC	alt_4632_reverse	46	113	76	48	133	59	142	61	145	42
TCTTAATGGATCTCTA	ref_4632_reverse	7	18	9	8	12	7	15	5	24	8
AAAAACACTGCCTGTC	alt_4632_reverse	9	25	27	14	27	12	30	16	29	12
AGCTCTAACGTTAGTT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GTAGAGCGCTGTCGGT	alt_4632_reverse	17	47	24	11	37	17	39	14	40	15
GTCGATTGCTCCGTAT	alt_4632_reverse	14	33	17	14	30	18	32	10	36	12
GGACCTTCTTAGAGGC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTTGTACACTATC	alt_4632_reverse	0	5	2	1	3	1	4	0	5	0
GGTGTAATACACTAAA	alt_4632_reverse	2	3	2	1	3	5	2	1	1	1
TCTAGTTGAATGAGAC	alt_4632_reverse	0	0	1	1	1	0	3	0	0	0
ATCCTTTAAGACATTT	alt_4632_reverse	30	104	51	41	109	44	105	41	110	27
ATCGTGAGAAATTGCA	alt_4632_reverse	19	43	28	21	46	18	30	9	27	4
TGTTCTCCTTTATGAA	alt_4632_reverse	10	21	8	8	10	14	12	10	17	5
CATGTCGATTTACTGG	alt_4632_reverse	9	15	14	9	18	12	17	8	17	13
GGGTTCTTGGTTACGT	alt_4632_reverse	29	37	29	16	34	20	39	17	40	20
GCCATCGGGAAGTTTT	alt_4632_reverse	0	1	5	2	1	0	0	1	0	0
CAAAGGAAGTCCCAGT	alt_4632_reverse	28	65	47	41	49	28	52	25	63	32
GTTTATGCGCGGAACA	alt_4632_reverse	23	17	36	17	4	21	9	26	14	25
TAGATGGCTTGGGTCC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TCCATGACGTCTTCTG	alt_4632_reverse	55	93	50	38	86	42	78	39	96	43
CGGTGCACTAGGTGGG	alt_4632_reverse	3	9	4	2	5	3	6	5	8	4
GCCTCTATCGACCATT	alt_4632_reverse	37	91	57	49	78	27	94	38	98	20
TAGCTGGAAGTCAAGA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ACCAGATCCCTTGGAA	alt_4632_reverse	7	15	10	4	15	4	20	13	23	6
CTGAGCCCTGAGGTGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GCGGACCTATGCGCGG	alt_4632_reverse	7	17	16	4	8	5	13	9	15	4
CGTCTCCCTGTCACTA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTTTGACAGCGAT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCTCCTATACTAT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GAGCGCTACATAACTG	alt_4632_reverse	40	86	60	41	76	34	75	34	92	38
TATTAGGCACAATCAT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CACCGAATGTCATGGA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCTTGTACTCTAA	alt_4632_reverse	31	91	67	62	86	47	113	52	106	31
AGGGTATGTGGCTCAC	alt_4632_reverse	1	7	4	4	2	4	5	1	2	2
GCCTTCACGTTATCCA	alt_4632_reverse	8	6	6	8	16	2	8	3	9	4
TGAGGCCTGCGGTAGT	alt_4632_reverse	21	39	38	19	39	28	46	33	50	19
AGATGCGTACTCGCTT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGTTTTTACATAA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CAGAGGACTACCAATA	alt_4632_reverse	15	16	11	8	21	6	22	12	26	5
GTGAATTGCCACTTGT	ref_4632_reverse	3	6	2	4	6	3	9	3	6	2
GGTAGTCGTCTCACCG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTTTTAATGAACG	alt_4632_reverse	8	25	6	13	28	9	18	9	21	14
CTCGCAATCCCATGGC	alt_4632_reverse	21	29	31	30	35	22	39	20	59	32
TCATGTACTCCGCGAA	alt_4632_reverse	3	5	7	2	9	1	4	1	6	3
AATTGGGTGATCGTGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTTGCTGCTAGGG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGCACGACGCGTA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTGTTCATTAGCT	alt_4632_reverse	0	0	0	0	2	0	1	1	4	0
TATGCCCGAGGATGTG	alt_4632_reverse	11	41	28	21	31	16	48	13	46	24
ACAGACTTTCCGCATC	alt_4632_reverse	46	120	47	29	89	38	102	40	91	35
TCTTCCCATTAACAAG	alt_4632_reverse	19	34	19	18	31	14	24	19	27	16
CATTGCTTTGGTGTTC	alt_4632_reverse	27	43	18	21	42	21	46	18	34	16
TGCAAGTATGTCTGTC	alt_4632_reverse	4	8	2	6	9	6	10	7	13	6
TTCGCCACTGTTGAGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGTTCGGTTCTAA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTTATCATTAATTTCC	alt_4632_reverse	22	38	26	23	29	22	50	18	54	26
CGGGCCGACCGTTTTG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
AACCGTGAGCCGTGGA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GACATGTAGTTTATAT	alt_4632_reverse	10	10	14	5	7	9	16	5	10	10
TACGCTCAGACCGGTA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTACCTTACGTTT	alt_4632_reverse	7	24	14	4	14	7	23	8	33	4
CGTGGCTAGCGATCTT	alt_4632_reverse	7	15	3	3	7	6	16	6	14	8
GGTCCTATTGTAAATG	alt_4632_reverse	6	14	5	7	12	7	10	3	16	3
TCTTGTCGGTTCTAAC	alt_4632_reverse	89	204	100	94	226	80	208	84	217	78
CCGGAGAATATGTTGC	alt_4632_reverse	19	33	29	18	38	22	47	19	44	17
ATCGTTTCTACCAAGG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TATATCGCTCGTACAA	alt_4632_reverse	33	43	39	22	35	21	41	18	56	33
TGCTCAGACGGTGACC	ref_4632_reverse	10	38	9	8	23	12	26	10	25	11
CGACGGCGACAGATGT	alt_4632_reverse	0	0	1	1	1	4	8	1	3	1
ATTTACTTGTACATTT	alt_4632_reverse	31	47	32	31	45	23	59	26	50	20
TTCTCGCTTCCTCTAT	alt_4632_reverse	37	58	37	31	62	42	68	33	67	42
GTCCGCTTCGTTGGTT	alt_4632_reverse	2	9	2	1	4	5	12	6	13	2
GCAGTCCCTTTTCGCA	alt_4632_reverse	13	17	17	14	40	17	28	9	43	12
CCTTGAAGATGGTTCT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GGGATTTTTCCCATTG	alt_4632_reverse	8	26	15	4	20	8	35	22	33	12
ACGCCCAATCCAATCG	alt_4632_reverse	23	53	12	17	48	25	50	15	40	12
TTCCCAACTCTAGAAC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TATGCAATACTGCGGA	alt_4632_reverse	18	32	24	26	33	17	59	15	41	19
GAACCAAAGCGATTAG	alt_4632_reverse	6	15	7	1	18	4	7	5	22	5
AGTCTCCTCGGACTGC	alt_4632_reverse	5	34	7	6	45	1	36	6	40	4
TTGCCGGTGCATAAGT	alt_4632_reverse	56	113	87	72	151	68	120	65	150	73
TTTTGTGTCACTTACG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTTGACTCGGCTGTTA	alt_4632_reverse	2	9	4	5	9	5	8	2	9	3
TGTCTGCCATATACCG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GATGCGGGCCCAGCGT	alt_4632_reverse	3	9	2	5	6	2	9	4	2	4
CCTGTCCCCTACGTTG	alt_4632_reverse	2	33	6	2	39	4	34	10	29	4
GTTCGATTTTCTTTTC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TCCTAGCTGATTTACA	alt_4632_reverse	12	25	20	22	22	16	35	11	38	15
TAATTTTCTGATAATA	alt_4632_reverse	28	60	39	31	73	38	45	31	53	27
AGGTGACTATTTGCAA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GACGCGGCGCTTATCT	alt_4632_reverse	10	20	22	16	31	18	33	18	14	11
ATGTTGAGCTAGGGTA	alt_4632_reverse	26	41	25	29	37	26	45	20	66	10
TTTTACGCAACTTCTT	alt_4632_reverse	6	9	4	4	4	5	9	2	11	1
GGCTCACCCCCGTTGA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CGATATTTTCTGTGGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTTTTTGTCGTAG	alt_4632_reverse	5	7	9	3	16	5	12	3	7	7
CTGAGACCTGAGGTGT	alt_4632_reverse	43	98	56	45	73	48	96	46	108	45
GTCGTGGTGGGTTCGA	alt_4632_reverse	8	23	9	6	17	11	20	8	15	3
ATTCAGGCTTAATACG	alt_4632_reverse	11	35	18	26	37	17	31	28	49	30
AATTCTAAGAAGCTGG	alt_4632_reverse	34	67	52	30	77	30	52	31	77	27
AATTTCTCTATTGGTC	alt_4632_reverse	36	65	30	31	46	30	70	23	67	24
TGTTTTAAGAGTTGCG	alt_4632_reverse	19	47	18	22	64	23	65	18	46	22
CATGTGGGTCCGCGCA	alt_4632_reverse	13	26	24	23	38	15	32	17	40	21
ACGAGGCTGGCCGTAG	alt_4632_reverse	5	15	3	7	10	3	14	10	8	5
AGTGGAAGATGCGCTA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGGCTGGATTTAG	alt_4632_reverse	15	19	13	11	32	15	27	21	20	11
GCGTATGTAATATACC	alt_4632_reverse	0	1	1	1	0	1	3	0	3	4
ACCGAGTTCAGCCCCT	alt_4632_reverse	8	9	1	9	5	4	14	1	9	3
TCACGTACCGCCCTGT	alt_4632_reverse	6	15	7	5	11	7	13	9	10	4
TCTCTCAGAACAAGTT	alt_4632_reverse	28	55	25	16	65	26	49	20	70	25
CAGTGGCCTATTCATG	ref_4632_reverse	0	1	1	0	0	0	0	1	1	0
GAGGCCCTCTGTCGTA	alt_4632_reverse	11	26	18	9	19	6	39	9	37	9
TCGTTGTCATCTGGGG	alt_4632_reverse	42	80	58	44	82	37	89	55	89	35
TGAGTAACTTGGGCTA	alt_4632_reverse	1	7	3	4	5	2	11	2	13	5
TTTTTGGGTACTTGTC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCCGACCCGGCGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGCAGCACACTAT	alt_4632_reverse	12	17	6	7	14	4	18	5	11	9
GTGTACCGACGTAAGG	alt_4632_reverse	10	32	6	7	29	12	23	10	20	6
TGGACCAGTTCCGTCT	alt_4632_reverse	27	42	18	21	45	11	48	13	39	6
TTTAGTGTAACCGCCT	alt_4632_reverse	1	3	4	2	2	2	2	1	8	4
GTCTGTAGGAGACCTC	alt_4632_reverse	6	23	11	5	27	8	22	8	21	7
CCTGTTTTGCTAACTA	alt_4632_reverse	6	12	5	4	28	4	15	7	9	5
TAACATTGGTATCGTC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTATTGGCCGAT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTGAGCCCACCGA	alt_4632_reverse	3	6	2	0	6	4	3	6	3	3
TTATATCAAATTCGGA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTCTTTTCACCAT	alt_4632_reverse	4	4	3	4	11	2	13	3	8	2
TCCTTTGAGGACTTTT	alt_4632_reverse	21	45	18	20	34	19	51	22	28	23
AATGAGCGCCTTCTCG	alt_4632_reverse	27	56	21	31	41	32	45	17	60	26
CTGCACGCTCCCTTAT	alt_4632_reverse	16	47	24	20	53	20	55	12	40	17
TGGATCACATAATTGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
GCACCGTTCGTGTCAA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGCGGGGCCCGGC	alt_4632_reverse	1	3	10	2	3	1	2	3	3	2
TCCTTGTTATACTTCA	alt_4632_reverse	4	8	9	2	5	5	11	2	6	4
GCAATGTCGGGCCGGA	alt_4632_reverse	33	75	46	32	44	34	63	29	82	29
GGTGGGATTTCGGTAC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TCCTAATATTAACAGA	alt_4632_reverse	3	8	6	6	9	4	5	2	15	2
GGCTAGGGAACGACCA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTCTTGTCCATCT	alt_4632_reverse	15	22	17	17	32	10	27	14	32	10
GTGCTTGAATCGCAAG	alt_4632_reverse	37	85	44	42	76	44	78	30	80	44
GATAACTAGATGAGGA	alt_4632_reverse	5	2	3	6	8	4	9	4	3	0
CCCCTTCCGTATCATA	alt_4632_reverse	47	143	100	63	123	57	126	45	137	46
GGGCCGTGTTCAAATT	alt_4632_reverse	7	21	18	9	30	1	22	9	21	11
TCACTGCCTAATTCAC	alt_4632_reverse	10	16	10	7	19	10	9	3	15	16
AGGGCTAAGACGCTTG	alt_4632_reverse	13	18	6	10	18	8	16	2	27	4
CGATCGTACCACAGCC	alt_4632_reverse	6	35	6	1	23	4	31	2	37	5
GGGATTGGTAAAATGT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTTGTTTTACAT	alt_4632_reverse	3	18	7	17	6	10	13	12	20	9
CGGATTTTACAGATTG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ACCAACCAATTCCGCT	alt_4632_reverse	1	3	0	0	7	4	10	0	5	1
ACCATCCCTAAGATAT	alt_4632_reverse	21	85	33	28	72	20	73	17	68	22
TGTTGTTCTGAGCCTA	alt_4632_reverse	31	50	50	40	52	20	47	17	55	24
TGTTCTCTACGTTAAT	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTAAATGGTTCTTGTC	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CATGTTAACGTTGTCG	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTATATAGGTTAA	alt_4632_reverse	0	0	0	0	0	0	0	0	0	0
CATCACTCCATCAGGC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CATGCGGTTCTAATTT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CGCGTTAACTATGTAT	ref_5163_RC	21	27	17	23	26	20	25	10	33	8
TCAAGTTGGTGAATTG	ref_5163_RC	45	74	44	47	82	43	75	31	64	40
CTGCGGCTCATGAAAT	ref_5163_RC	22	19	24	23	29	25	26	18	30	17
GAACTTGCTTTTCTGG	ref_5163_RC	14	11	15	16	17	5	23	7	19	10
ATGCATAGCCAAATTG	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TGTGCCGGTTTCCCTT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
ACACCTTGATGTGTGG	ref_5163_RC	53	113	52	37	111	49	132	53	109	62
TCTGCGTGTGTTACAG	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TGTCCCGTTTAAACTG	ref_5163_RC	11	19	20	11	18	11	25	12	24	18
CTAAATAACGCGCGAT	ref_5163_RC	9	19	14	21	18	10	25	11	12	7
CGTTTCTTGTTGGACT	ref_5163_RC	56	78	79	44	67	48	79	58	77	48
TGTTCCGGGGCCCGTT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TAATTCATTGATCTTG	ref_5163_RC	125	178	169	111	149	134	184	117	162	126
AAGGGCTATTCAATCT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TCTCATCCTAGGTCTA	ref_5163_RC	26	38	34	34	55	26	54	25	42	32
AAGGGATTTAGGTTAT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
AGATAGGCTCCCCTTC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
AGGCCTGTCATCAACC	ref_5163_RC	11	14	6	13	22	14	14	6	11	3
GAAGTGCTGCTAGTTT	ref_5163_RC	2	4	5	5	4	0	6	3	7	4
ATAAGTTAACTCGAGC	ref_5163_RC	8	18	12	7	16	20	26	9	31	6
GGTGACTTAAGCAGAT	ref_5163_RC	9	11	2	7	5	1	4	2	5	3
CAATCAGTTATGCGGT	ref_5163_RC	161	222	153	151	216	135	233	136	244	123
ATATGCTGTCGATGTT	ref_5163_RC	16	28	27	20	32	15	38	27	41	24
TACGTGTGCGCATTAT	ref_5163_RC	23	25	15	10	28	9	30	12	29	19
CTAAAAAACAGCAACC	ref_5163_RC	9	12	11	12	7	5	14	5	4	4
ACGGTGACAGTCGTGA	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
ATAATTCAAGCTTGTG	ref_5163_RC	28	41	61	33	50	33	57	26	51	30
CGGGTATGCCGGGACC	ref_5163_RC	42	83	49	40	85	35	67	48	72	39
TTCTGTAAATAGTCAT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CTCGTGATTCTATAGT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TATTTCCTCAGTCTGG	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TAGTCGTTGGTATCTC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CATATCAATGGACTTT	ref_5163_RC	34	42	31	28	37	36	32	23	43	22
GTATTAGACACCCAAT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
ATCTGCAGATCTTGTT	ref_5163_RC	12	11	9	21	24	7	18	11	10	7
TGTCAGCATCGATTAC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
AATGTTACCAGTCTCA	ref_5163_RC	10	19	23	14	16	9	24	17	22	12
GCCGTCTTCGATGTAA	ref_5163_RC	38	58	59	51	77	42	68	42	66	31
TACATGTCGCTTTCGG	ref_5163_RC	81	84	58	53	61	51	64	55	100	56
TCAGTCTATTTTTTGT	ref_5163_RC	14	16	12	22	13	7	20	7	19	10
TACCAACAAGTAAACG	ref_5163_RC	36	41	41	29	55	40	43	44	50	35
CGTCTAGAACAGTTGA	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CACTTATTTTTGTTTG	ref_5163_RC	9	7	7	4	7	5	3	3	6	4
AGCACTAATAGCAGGG	ref_5163_RC	14	31	30	17	39	17	30	18	27	27
TGTATAGGTTTTGATA	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTCAAGTTTACG	ref_5163_RC	5	15	12	12	20	5	11	4	23	6
TAGCTGCACGGCATGA	ref_5163_RC	84	162	97	112	165	106	195	99	195	83
ACTGTCCAAATCTTGT	ref_5163_RC	23	24	34	28	39	28	50	24	44	18
AATTTAGTCGTCGGAC	ref_5163_RC	7	14	9	5	8	5	7	5	9	6
CTCTTATTGCGGTCTT	ref_5163_RC	4	15	4	8	8	3	15	5	9	3
TAAACGAGCAGTCAAT	ref_5163_RC	17	20	7	13	14	11	17	6	28	15
CTACTATTTGCTCGCC	ref_5163_RC	33	49	56	31	46	26	60	24	49	36
CACTGTCCACGGTTCC	ref_5163_RC	13	24	14	10	17	11	27	4	28	7
TGTTGCACTGAAGCCA	ref_5163_RC	6	2	8	4	5	5	6	1	6	2
AGTCCTCAGATGCCCT	ref_5163_RC	9	5	1	3	4	6	6	7	7	3
TAATGACCACGCAGCG	ref_5163_RC	25	36	28	36	58	39	49	37	39	30
GGTTACTGGGCGAAGT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CCTCTAGTTTGTATGT	ref_5163_RC	33	45	20	23	37	33	58	29	62	17
GTAGCCGTGACCAACT	ref_5163_RC	19	34	30	21	26	22	41	13	40	20
TCGGGGCGATCTGAAC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CCTTCCACGCCCTAGA	ref_5163_RC	1	6	8	4	7	5	10	5	6	2
TGCCTGGTACATCATT	ref_5163_RC	17	34	24	26	37	29	46	12	58	27
CGGAGGACATCTCGCT	ref_5163_RC	1	7	6	16	20	16	12	10	26	10
TCCCAGATTCGGCTCA	ref_5163_RC	44	77	47	32	64	53	73	34	65	38
CTATTCCACTATCTCA	ref_5163_RC	22	16	17	18	21	11	26	13	32	20
GGAGCGAGCGTTTTGA	ref_5163_RC	10	11	15	8	9	13	15	6	4	11
GTGCTACAGAGCGGTC	ref_5163_RC	0	0	0	2	1	0	0	0	0	0
TTACAAAGCCCTGTAT	ref_5163_RC	54	91	48	34	59	44	67	24	61	31
CGTCCGACGAATGGTT	ref_5163_RC	127	151	145	122	167	109	173	112	185	122
TGGTCCTGGTCTCCAT	ref_5163_RC	37	34	41	30	43	21	43	16	36	21
GTGTCTGTTCGTGATC	ref_5163_RC	28	23	26	21	27	16	31	6	23	10
TTAGGATGTCGGTGTA	ref_5163_RC	18	32	21	28	22	22	34	19	32	23
TAATTGGCGGCCCGCC	ref_5163_RC	23	35	43	38	48	34	53	19	44	35
CCTTCGGTATCGCTTT	ref_5163_RC	16	6	11	9	8	8	7	9	16	6
TATAGTTTCGTGTTCC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CATGCCAGACGCTTCA	ref_5163_RC	23	14	22	23	31	15	25	15	23	17
CCTTCTCCGCAGCGGC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CGCTTATCATCACACG	ref_5163_RC	4	13	8	7	10	10	12	3	8	8
CATGAACGGCCTCCTC	ref_5163_RC	3	5	1	0	2	2	11	0	2	3
AGGCTGGGTCGCTCTT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
ACCTGGGTTATGCTTT	ref_5163_RC	24	34	26	24	33	19	24	14	38	17
ACTTATTGCCAATCTG	ref_5163_RC	45	69	52	43	48	39	55	39	71	25
TAGGCACCGAAAGTCT	ref_5163_RC	23	25	12	12	16	7	25	6	18	9
CCTAGCAATTGCATAC	ref_5163_RC	24	51	17	12	43	13	59	18	50	11
CAGGTCGTGAGACCGT	ref_5163_RC	13	8	3	1	3	5	10	7	9	1
CAATGAAACAGGTAAG	ref_5163_RC	48	54	59	48	62	42	73	39	65	45
ATACGCGGCTCTTTCT	ref_5163_RC	11	3	9	3	6	10	8	10	4	9
CCGGGTCTTTTTGCGC	ref_5163_RC	5	41	8	7	23	8	49	2	40	2
ACGGTTGCCCCAAAAT	ref_5163_RC	9	18	20	10	12	8	11	13	16	8
CGGAAGATAAAGACCG	ref_5163_RC	37	41	36	24	63	30	50	31	45	29
GTATCAGACGATGATC	ref_5163_RC	18	33	30	23	21	18	20	14	32	23
TAAGATACATGATTTC	ref_5163_RC	34	43	30	29	33	31	50	29	47	24
CTATCTTGGTATCTCA	ref_5163_RC	15	15	21	19	25	21	22	12	19	8
ATTAATGAAAACTCGC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CCTCTGTTTCGGGGGC	ref_5163_RC	2	0	1	0	2	1	2	5	1	2
AGCGACGGTCTTCTCG	ref_5163_RC	14	23	8	19	20	18	26	14	20	17
TCACTATGTGAATTTT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
GCATATGACGAATAGT	ref_5163_RC	35	46	39	39	37	32	59	13	53	37
ATCGCTTACATACTTT	ref_5163_RC	25	42	46	34	39	28	39	21	39	24
CCATGATTGTTCGCCG	ref_5163_RC	9	6	6	3	2	1	6	3	9	2
AGTGCTCCGTAAACAC	ref_5163_RC	22	22	37	23	36	38	41	19	38	27
TCTAATTCATTTCGCT	ref_5163_RC	4	11	9	7	8	9	10	11	13	8
AGGTGCTCAACGAGGT	ref_5163_RC	64	96	75	61	97	76	97	79	78	58
GTGAGAACACCCATGC	ref_5163_RC	36	51	40	50	44	48	62	30	45	31
CCTAAATGAGTTCGTG	ref_5163_RC	51	50	46	60	59	34	47	35	61	36
GTTACGCAGTTTTCCA	ref_5163_RC	40	40	33	18	42	31	50	29	34	28
ATAGACTTCGGCGCCG	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TCATGGAACGTATCAA	ref_5163_RC	10	12	13	7	12	9	9	5	14	5
TCTCCACGTCTGACAT	ref_5163_RC	7	20	7	6	17	4	16	2	18	6
AATTTCCTGCGTGGTA	ref_5163_RC	69	58	49	48	62	41	77	46	71	50
AATATATCATCATTTT	ref_5163_RC	35	55	49	51	51	43	58	44	56	40
ATAGGCTACGTATGGT	ref_5163_RC	41	79	55	45	52	53	62	42	75	36
CACCATTATTCCTCGC	ref_5163_RC	42	83	63	51	82	53	81	42	67	66
GCCCGTAGATTTGCAC	ref_5163_RC	4	6	8	2	8	6	5	4	4	2
CTTGTAGCCGCGTTTA	ref_5163_RC	5	7	5	7	11	3	9	15	12	5
TACCTTACTTCCTTTA	ref_5163_RC	102	132	113	105	132	101	161	108	133	88
AAGTCCTGTTCGCGAC	ref_5163_RC	0	2	3	2	4	1	3	2	4	1
AGTTGGGTGATAGGTA	ref_5163_RC	25	50	39	39	48	30	64	26	55	29
TTTTATTGCACCTACA	ref_5163_RC	7	14	4	19	12	13	17	6	24	13
AAGCTTAGACGTTTGC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CTAGCGACGTTTGGGA	ref_5163_RC	18	24	27	26	36	19	21	20	29	20
AATATAGCATCCTACG	ref_5163_RC	14	16	14	15	15	7	21	17	26	19
CTCCTCCCAACCGCTC	ref_5163_RC	111	127	108	103	127	109	153	88	152	85
GTGGCACTCTGTGTTA	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
GCAACTCTTGTACCCA	ref_5163_RC	9	17	10	7	22	9	10	14	10	7
TTGAGGCGGATGTGTT	ref_5163_RC	6	6	5	8	2	6	4	6	12	7
TGCTTCGACGCCGTGC	ref_5163_RC	22	26	18	16	27	20	36	13	26	20
TACTAGCCGTGCCTGA	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CTAATTTGGAGAGCTA	ref_5163_RC	25	41	25	26	40	23	33	23	44	22
GCAAAGGTTTCGTGCA	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
ACTGTCACTGGGACGA	ref_5163_RC	16	43	33	27	52	21	72	26	61	32
CTTCTGGGCGGAATAC	ref_5163_RC	27	50	31	21	47	42	61	31	47	27
ACGCCCGTTTCTCTGA	ref_5163_RC	13	27	18	15	25	19	38	21	40	17
AGGGATGGGTCATAGT	ref_5163_RC	26	52	31	36	48	28	51	19	45	26
CCTATTAGTTGAGACC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTCCTCTAGAAC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TTCGCCCATTACGCTC	ref_5163_RC	42	66	70	48	69	47	63	39	62	45
TTCTTGTACGTAGGCC	ref_5163_RC	69	106	107	76	76	69	107	73	116	73
AAACCGGGGCGTTGTG	ref_5163_RC	3	15	5	3	9	1	14	2	7	3
CATCCGGGTAGCGCTT	ref_5163_RC	16	28	15	17	30	16	36	21	22	15
TAAGGTGTATCAAAGT	ref_5163_RC	12	20	13	11	19	9	18	12	16	12
TCTAGTCCAGCCCGCT	ref_5163_RC	154	249	206	168	289	182	262	180	300	183
TTACACTCTAGCATGT	ref_5163_RC	42	59	52	48	75	41	65	31	63	42
AGGTTTACGATTGTCG	ref_5163_RC	1	3	1	2	2	2	4	2	5	0
GATAGAACCACTATAG	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CAGCTTCACCTTGTCC	ref_5163_RC	9	15	13	5	14	11	11	6	21	4
CGACCTGTAACCTTGA	ref_5163_RC	18	40	30	27	29	36	44	32	33	35
GATAATGGACTCGCGC	ref_5163_RC	10	18	13	18	23	16	21	9	11	6
GCCATGAAAAGTTTAT	ref_5163_RC	41	77	55	63	79	46	87	46	89	34
AAAATGAGCGTACGCC	ref_5163_RC	12	31	26	18	33	16	21	21	31	24
TTCATCAGTAGTCGCC	ref_5163_RC	22	32	33	14	33	19	33	19	20	11
AGCATCGCTGTATGCC	ref_5163_RC	5	9	6	7	14	7	9	3	17	7
GTTGAGAGGATTTAAT	ref_5163_RC	18	22	19	30	26	15	23	23	30	21
AGTACTTGACGATGTA	ref_5163_RC	30	28	26	20	48	23	42	17	60	23
GACGATCGCCGCTGTT	ref_5163_RC	15	13	9	9	8	10	20	15	16	12
ATGGGGTAGATTAATA	ref_5163_RC	6	18	9	9	11	12	29	10	15	4
CCACTGAGCAAGGGAC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
AATCTTCGCCCAGGGT	ref_5163_RC	16	19	16	29	26	15	15	21	16	12
AGTTCCCTGTTATACT	ref_5163_RC	3	2	2	3	3	3	4	1	0	1
TTTTTCTACTTGTCGG	ref_5163_RC	65	112	91	90	113	73	111	72	121	71
GTTCGTAGTTCCGCTA	ref_5163_RC	34	25	15	37	32	17	28	20	37	12
TTAGCCATTCTGTGTT	ref_5163_RC	9	17	11	4	28	8	34	2	24	9
TCAGTGTCGTTTTTTG	ref_5163_RC	23	33	30	35	42	33	47	27	43	33
CACGGGTTAATCTCTT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TGAGATTGGCTCCGCA	ref_5163_RC	44	58	60	43	61	35	55	27	64	23
GCGTTTGCGACCTAAC	ref_5163_RC	48	85	44	47	66	68	75	44	99	36
TCCTCGTACGATAACA	ref_5163_RC	24	33	31	25	45	26	45	26	41	27
CGTATCGGTTGTTTCC	ref_5163_RC	154	205	178	144	215	124	251	144	231	116
TTCTTGTTTCTGCTAA	ref_5163_RC	15	14	18	14	20	12	25	11	23	16
CACCAGCCGCCCGCTT	ref_5163_RC	12	19	15	9	12	9	17	8	14	13
TCTCCCACTATGTCGA	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CGGCGCTGCGGAAGGA	ref_5163_RC	41	57	47	32	42	31	39	27	45	37
TCGACAGGCTCGCATC	ref_5163_RC	12	12	11	8	10	10	20	10	9	3
GACATAAAGTCGAGGG	ref_5163_RC	2	0	1	0	1	0	2	0	2	2
TCACGGCCGACTTGTT	ref_5163_RC	4	14	4	2	7	1	8	0	13	5
TGGCATCTTGCATGTC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
GTTCATATTGACTGTC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
GATTAACTAATCGGGC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGTAGTGTGTCC	ref_5163_RC	4	13	17	10	12	8	28	9	14	15
GGCTCCATTAGGCCCA	ref_5163_RC	73	62	59	61	49	58	78	63	92	43
GTGGTGCCTAGCTTCG	ref_5163_RC	22	41	24	18	44	30	44	18	44	26
TGAGGTTGTTCGTAGT	ref_5163_RC	4	13	7	10	6	8	15	4	13	6
GCCGCATTTCATGGCG	ref_5163_RC	40	57	67	55	49	42	55	41	55	43
CGCTTCATTCGAGTTC	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
GCAGTTAACGAATTAT	ref_5163_RC	29	42	42	31	35	22	30	32	44	20
CTTGTCCTTGGCCTTG	ref_5163_RC	5	9	13	6	18	10	20	3	20	11
TGGGAACCAACGCCAA	ref_5163_RC	11	11	10	12	9	6	24	12	20	9
CGATTTATTCCAAGTG	ref_5163_RC	32	60	41	37	54	44	59	35	58	27
TTTTCGGGCCGCCTAG	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
TTGTTATATTCAGCTG	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
ATAGCGCTTACCTTAA	ref_5163_RC	4	52	5	5	35	6	51	8	43	5
AGCCCCCCAAAGCGTT	ref_5163_RC	79	132	88	73	114	56	106	67	108	57
GCGGACAAGCCTGCTG	ref_5163_RC	45	56	53	42	52	34	59	38	73	43
GCGACTGGTTCACAGT	ref_5163_RC	15	32	21	20	31	17	30	19	34	17
TTCAAGAAATCATATT	ref_5163_RC	3	6	6	2	2	7	6	6	11	5
CCGCCTTCTCACAATA	ref_5163_RC	29	50	46	48	64	35	56	27	70	40
TCCGTTCAAACCTCCT	ref_5163_RC	0	0	0	0	0	0	0	0	0	0
CCCGTATCTATTTCTG	ref_5163_RC	62	71	83	58	72	62	68	65	74	51
TCTTCGGTACTTCTCT	ref_5163_RC	18	26	25	18	32	26	33	22	36	31
CCTTGAGCAGTCCACG	ref_3247_reverse	19	26	22	20	11	20	22	21	24	17
GTCAGAGCAACTATAT	ref_3247_reverse	5	6	6	1	6	3	6	10	2	9
ACAACATTTGGGTGTC	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGAGTCATCTCTC	ref_3247_reverse	40	37	50	41	31	28	42	40	51	35
TCACGGTCCGGATATT	ref_3247_reverse	10	16	11	16	26	12	17	10	20	16
TAGTTTCCGCACTTGA	ref_3247_reverse	54	63	58	50	40	38	43	38	60	31
ATAAGGTGTTTAGCCT	ref_3247_reverse	39	63	64	38	65	39	52	47	43	36
CGGCAGGAAATCAAGC	ref_3247_reverse	6	4	11	7	5	10	8	6	6	9
TTCTCAAATCTGAATG	ref_3247_reverse	45	62	59	39	57	50	52	50	62	40
GTCGGCTTGATGAGGC	ref_3247_reverse	28	11	29	30	21	28	36	18	19	23
TTTTCCATTATACGGC	ref_3247_reverse	3	7	5	2	5	8	8	8	3	5
AATGTGCCACGTTAGC	ref_3247_reverse	9	20	10	12	17	15	21	12	17	12
AGCGCCGAACGACCGG	ref_3247_reverse	20	21	20	22	24	10	23	20	27	19
ATGAATGTATTCCCCC	ref_3247_reverse	0	0	0	0	0	0	1	0	0	0
TTGCTTCTAATTGAGG	ref_3247_reverse	34	57	67	65	60	52	50	52	45	42
GATTTGATGATTAACA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CTTCAACACAAACACA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTTGGGGCAATCG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TGAATCAGGGTGTTAC	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CCACCTAGCTCTCGTC	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CGAGAATACTACCGTC	ref_3247_reverse	40	28	49	34	38	38	32	36	70	26
TCCCATCTTCATACGG	ref_3247_reverse	24	28	22	22	24	16	28	17	35	17
GGATGAGCCATTCCCG	ref_3247_reverse	8	9	7	5	15	12	10	8	10	3
CGTATAAACAAAATGT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TTATCCGTCCACGCGA	ref_3247_reverse	63	53	88	37	69	60	69	50	48	61
GGCCACATATGAAGTC	ref_3247_reverse	26	29	30	31	34	20	39	20	32	13
TCCCTTCTTGCAATGT	ref_3247_reverse	15	10	10	10	9	13	19	14	17	11
TTTCTGGGGCGTATGG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTGAATAGCCCGT	ref_3247_reverse	16	18	20	15	9	19	19	13	18	16
AGGAGGCAGTGCGAGC	alt_3247_reverse	57	36	69	44	56	69	61	37	59	52
CTAGTCCCGACGTTCA	alt_3247_reverse	24	26	31	16	33	20	36	23	31	16
TGTGTCGTCTCTAGGC	ref_3247_reverse	9	13	20	25	13	5	14	7	12	13
CCATCCCAAGGGGAAA	ref_3247_reverse	21	21	15	22	22	10	31	15	20	12
TTTTTCTGCACTTGGT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTATTCTTCATTT	ref_3247_reverse	44	55	48	56	49	60	48	54	62	40
CTGGTTAGATAATAAT	ref_3247_reverse	23	17	13	17	12	19	17	9	19	10
CAACAGAACTACGACT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CGACCAAGTCTTTCTC	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
ATCGACCCCGAGTCAT	ref_3247_reverse	1	3	2	2	4	3	0	5	8	1
CGTACGTATGATCTGT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCATGATGATCAA	ref_3247_reverse	37	38	42	35	21	40	15	33	41	33
GTAGCAGTTTCTTCAC	ref_3247_reverse	18	18	24	23	15	21	11	14	17	14
GACCTTGGTGCACACA	ref_3247_reverse	64	45	63	47	48	39	48	43	47	45
TTCGACGCCCTGGGCT	ref_3247_reverse	34	34	43	42	34	36	43	34	50	30
GGACTTTATGGGTCCA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTTTTGTGCACGT	ref_3247_reverse	28	33	29	27	31	35	32	31	28	33
GCCCTCCAGCCTATAA	ref_3247_reverse	7	7	6	14	9	11	12	9	13	3
TATATACGTACTGGAT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GACCGAAACACACATG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTTCTGAACTCAC	ref_3247_reverse	2	2	7	4	5	7	5	2	5	3
TTCTGTGACGTTCGTT	ref_3247_reverse	7	9	6	9	6	6	9	7	11	9
TTATTTCATGATGGAT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TGCTACGGTTGAGAAA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CACCCGACCTATAATT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TGATACGCTGCATATG	ref_3247_reverse	98	90	76	75	100	85	102	89	88	81
CTAATTCTCTCCGTTG	ref_3247_reverse	36	66	74	50	58	49	60	43	57	41
TGCAGCCAGGATTTAT	ref_3247_reverse	77	63	67	55	79	75	78	67	67	50
GTTTTGTTTGAGTTTC	ref_3247_reverse	15	16	25	13	14	12	20	13	25	19
ATGTGTACTTTGCTCC	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GATAGATTCTAGGGCA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCCGTCGAGGATG	ref_3247_reverse	24	42	24	17	29	11	20	10	25	13
GTATTTGTCTGAACTT	ref_3247_reverse	40	32	50	30	39	36	38	33	53	35
AACTCGGCCGTCGCGA	ref_3247_reverse	62	83	107	82	83	79	102	52	113	68
GTGGGTACTGTTCTCT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGGCTTAGCTAC	ref_3247_reverse	4	5	7	7	8	7	9	2	5	6
TCACGCTTTATGTGTC	ref_3247_reverse	28	55	39	33	49	22	36	27	48	34
GGTTCACCTCTATTCC	ref_3247_reverse	99	77	108	109	87	84	95	100	96	83
ATAGCGAACGCGAAAA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGACCTGTTACGA	ref_3247_reverse	37	43	53	37	48	34	57	42	55	41
TGACTGCTGGCACGCG	ref_3247_reverse	6	6	4	5	7	6	6	8	8	3
GACGAAACGATGCTGG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTGCTCGTCTTTA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CTACTGAAGTTCTCTT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GTTATCTTGCTCCTGG	ref_3247_reverse	34	45	49	40	38	37	51	46	48	36
AACTGCTCGCGATACA	ref_3247_reverse	0	1	0	2	0	3	1	1	2	4
TCTCAGTGCCCTCGCC	ref_3247_reverse	5	4	11	6	8	9	11	7	7	5
CGCTCTAGGACTCCGA	ref_3247_reverse	52	69	75	60	77	67	86	57	62	49
GCTTACGGGTCCCTCA	ref_3247_reverse	17	10	22	21	12	17	11	12	14	26
CACTCTGTGACCTTCC	ref_3247_reverse	0	0	0	1	2	0	0	0	0	1
GTATTTTCATGTTTGT	ref_3247_reverse	8	1	4	8	6	2	8	4	4	4
CGATGACCGCTCTTCG	ref_3247_reverse	50	44	66	48	61	36	66	42	52	53
GACTTACACATGTATC	ref_3247_reverse	31	48	41	38	42	37	35	41	51	35
TTGGTCTAGTTTTGCT	ref_3247_reverse	14	20	15	18	18	20	16	18	26	18
CACTCGGTGGCAATCC	ref_3247_reverse	38	43	52	35	41	27	63	43	42	51
CTTGGGAATTGGTGAT	ref_3247_reverse	54	43	34	41	35	36	26	35	38	41
TTGTTTTTATCTATTG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTGGCATTTAAA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
ATCAATGTGTGCATGG	ref_3247_reverse	57	68	72	71	63	62	81	52	70	77
CAGCTGATTGTCTAGT	ref_3247_reverse	11	35	21	14	31	23	28	24	35	14
CTCATAAGTTCGAAAA	ref_3247_reverse	71	113	99	89	142	91	110	102	110	58
AGATCGGAATGGGTCA	alt_3247_reverse	37	39	39	37	29	46	27	30	34	33
GGGTTAAGGAAAATGT	ref_3247_reverse	48	33	33	35	32	26	26	28	45	31
CAGAACCAAACATCGC	ref_3247_reverse	71	86	103	89	73	83	75	79	83	69
CTGGAAGGCATAATTC	ref_3247_reverse	45	49	48	41	33	41	48	54	70	39
GTAATTTGATTGATGT	ref_3247_reverse	115	108	144	108	72	146	102	109	103	83
GGCCTTGGTAAAATCT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
AAAAACCTTGACTCCC	ref_3247_reverse	29	21	38	18	16	16	45	16	39	27
AGTGGTTGCAGTTCTA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GCAGATATTACCGTAG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
AATAGCGGGTAATGGC	ref_3247_reverse	2	0	4	4	2	1	0	1	0	2
CTACATTCCCCAAACC	ref_3247_reverse	19	48	15	14	33	26	54	17	45	17
AGATCAAGTGCCAGGG	ref_3247_reverse	19	20	25	28	32	26	28	24	33	24
TTCGAGACGCAGTATC	ref_3247_reverse	3	3	4	2	9	2	2	1	8	4
CGCCATGGTGGCTGAT	ref_3247_reverse	35	27	50	37	34	26	29	42	35	30
TGGAGTTAAGCAAAGA	ref_3247_reverse	115	74	133	113	86	94	117	89	95	84
ATCCCTTCACTGATTG	ref_3247_reverse	67	77	86	70	73	98	81	72	84	80
TTCGTGCACTCCGCTC	ref_3247_reverse	5	8	5	7	13	7	7	2	10	2
TATTGCGTGCGGTATA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTTGCGATGAAG	ref_3247_reverse	17	13	16	14	19	19	21	24	18	6
ATTCGAATGTTTAGAT	ref_3247_reverse	18	14	24	19	15	18	25	15	8	14
TCTTCTTCCTACGCAA	ref_3247_reverse	54	42	64	48	64	46	53	53	67	41
AATAATTAGGCACCGT	ref_3247_reverse	25	12	32	25	23	32	22	22	33	28
TAATGACATGGAAGTG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GCTGACTTGAGAGGGT	ref_3247_reverse	3	12	7	7	3	2	3	3	4	7
CGACTCGTGGACTTGG	ref_3247_reverse	82	79	94	86	66	65	74	67	70	55
TCATTTGGCTCGAGTT	ref_3247_reverse	6	9	6	6	10	9	5	5	12	5
CGGGTCGCGCTATCAG	ref_3247_reverse	9	14	15	11	13	15	10	13	7	12
TTTGAATATGCGGTGG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGATATGGGAATT	ref_3247_reverse	5	7	12	7	12	9	9	7	8	1
TGATGCTACGATGTAT	ref_3247_reverse	62	87	95	78	82	71	88	57	112	65
TCTCTGACTTGGTAGG	ref_3247_reverse	18	17	13	11	12	14	18	11	13	8
GGGTAATTTTTTGTAA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GCTATCACGCCGTTGA	ref_3247_reverse	13	8	13	5	7	4	8	10	12	5
CACGTTTTGTTTTCCT	ref_3247_reverse	8	2	9	9	6	10	5	7	6	5
GTAGAACCCTGTCTTG	ref_3247_reverse	1	9	2	8	3	4	3	3	4	2
CGTTTGGCCAGTCTTG	ref_3247_reverse	119	112	131	137	141	140	104	109	127	118
GCATCACTGTCCTGTA	alt_3247_reverse	50	57	76	38	54	57	54	45	56	53
TGACCACAAAAAGCTG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TGAATCACTTAAGTGG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGTTTTTTTATAG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CGACACTTCTTTTGGT	ref_3247_reverse	5	9	8	9	14	2	9	5	5	6
CCTTGTGCTTATACGA	ref_3247_reverse	0	3	5	2	2	3	4	1	3	3
TCTCCCTTTATAACCG	ref_3247_reverse	21	21	21	16	20	21	12	21	24	14
ACTAAAAGCGTGTTTA	ref_3247_reverse	39	49	44	52	43	36	47	34	51	35
GGCAGTGACAGCTATA	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCCACGGGAACAC	ref_3247_reverse	17	14	34	21	22	17	13	20	32	11
TTACTGGATTTTGTGA	ref_3247_reverse	6	4	18	14	13	11	11	13	12	11
ACCATCACGGAACCTG	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
TTTTACACTACCGGTT	ref_3247_reverse	0	0	0	0	0	0	0	0	0	0
GCACGGCACAACGCTG	ref_4553_fdr	64	46	64	73	50	57	51	65	65	47
GCTTAACCTCGGTTTG	ref_4553_fdr	6	8	16	12	10	12	5	6	12	9
GAAATCTCTGATCCCC	ref_4553_fdr	23	19	22	22	17	16	26	22	19	18
GACTCGGCCGTCGGCT	ref_4553_fdr	12	7	8	6	3	2	14	11	6	4
TATGACACTCTTGCTT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
AACACACTGAGACTAG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GATTTAGTGTCTTCTT	ref_4553_fdr	2	9	0	2	3	3	5	5	4	2
TTAAACAGCCGGATTC	ref_4553_fdr	10	21	20	9	22	20	14	11	16	19
CGGATCTAATTGTGCA	ref_4553_fdr	4	1	1	2	1	1	0	0	1	0
ATCTCTAGGAAAACCC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CTTGAACTAGCATTAT	ref_4553_fdr	7	6	8	4	11	9	6	8	12	9
AGTTCATGCCTATGCA	ref_4553_fdr	43	51	57	42	53	35	62	37	60	43
ATGCTGGTCAACCGGC	ref_4553_fdr	5	7	12	8	8	7	15	4	8	10
TATGAAAGTTGGGCTT	ref_4553_fdr	4	4	2	4	3	6	5	4	3	10
CAGGACCTTCCGGTAC	ref_4553_fdr	94	60	81	64	66	61	87	54	79	60
CGAAAAAGCTGCTCCT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CACGCCCCGTAATCGG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGTACGTTGTGTA	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TGGACCATGTACGTGT	ref_4553_fdr	81	86	122	91	101	80	113	100	128	80
GACTCTGTCTTAGTCC	ref_4553_fdr	22	14	25	18	20	20	16	18	14	16
GATGTTCTTGTGTGAT	ref_4553_fdr	8	9	8	12	6	11	13	9	17	6
AATTAGTATCTTCGGT	ref_4553_fdr	41	24	32	34	40	31	28	25	32	20
CATCGCTCGACATCCG	ref_4553_fdr	8	2	12	10	9	12	8	6	4	10
CCCTGTGCTCCCCCAA	ref_4553_fdr	39	42	44	54	29	38	38	44	43	33
TTAACCTTTTATATTC	ref_4553_fdr	7	10	7	6	5	10	7	4	8	8
AGAGGTGGTCTGGTTC	ref_4553_fdr	1	8	10	8	7	8	2	4	3	3
CCTTAGTGCCCAGTTA	ref_4553_fdr	7	8	9	12	8	10	16	11	13	13
TTGTTTCGGATCCTCC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCTATTTGTAGAA	ref_4553_fdr	4	2	7	1	6	3	3	1	2	2
CACTCCCGAGCAAGCT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGTCTGACTTCA	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CGACGCTTCTTGTTCA	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GAAGATTGCAGTGCGG	ref_4553_fdr	30	23	54	19	25	27	28	28	36	25
TTAGCTGAGCTAAGTC	ref_4553_fdr	97	105	114	103	79	89	87	81	95	59
GTCTGATTCCACACGT	ref_4553_fdr	21	20	27	22	18	21	35	23	32	18
TCGTAATAGGGGGGCT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
ATCTAGAACAGTAGAC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TCCGATAGTAGTATTG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCATTTACTAAGG	ref_4553_fdr	273	230	314	273	231	231	262	294	277	218
CATACCGGCACACATC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGGGGTGGCAAA	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GTATACGAGCTCTTTA	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTTAGTACCTCAC	ref_4553_fdr	48	63	38	35	43	36	29	42	32	26
AACCTTCGTCTTCAAT	ref_4553_fdr	39	27	32	47	35	24	34	19	49	38
AGAAAGAAGATCTTGC	ref_4553_fdr	14	21	22	18	16	9	22	12	13	10
GCGCCGCGATTTGGAA	ref_4553_fdr	27	40	57	28	29	24	25	23	38	31
CATTTAGTGCTCATTG	ref_4553_fdr	48	78	65	69	88	57	70	60	80	51
GTGCATTTGGCGAAGC	ref_4553_fdr	15	20	35	28	27	25	16	28	22	14
ACACATGCGTGGTTAC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTGGACCTTCTATGTG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCAACTTCTAGTT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
ATACTGTACCTACTCC	ref_4553_fdr	38	48	27	32	36	22	40	27	37	34
AAATATTTCCCAGGGG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTGTAGATTTGCA	ref_4553_fdr	29	32	28	34	30	24	29	32	30	28
GTTACGGTGTCTGTTT	ref_4553_fdr	24	30	42	31	34	27	38	22	29	32
CCGCCGCTGGACTTCC	ref_4553_fdr	3	11	3	2	5	2	7	3	5	1
CGCGAGTCGTGTTCGT	ref_4553_fdr	45	52	55	45	48	54	54	56	52	41
ACCATAGTCTGAGTAG	ref_4553_fdr	12	13	15	16	11	11	11	10	14	10
ATTAACGCTAGTCCCA	ref_4553_fdr	34	38	45	36	31	40	42	32	29	66
TTGTCGTATGGACTGA	ref_4553_fdr	5	6	9	7	4	7	5	7	5	2
GGAGCCCTCCCTGGAT	ref_4553_fdr	21	13	25	15	16	20	16	28	14	10
TCATAATCAATGGCTC	ref_4553_fdr	11	8	9	12	8	18	9	7	12	11
ACTGCATGAGGAAGAC	ref_4553_fdr	14	9	27	24	26	18	22	18	27	14
TGGCTTGCGTTTAGCT	ref_4553_fdr	24	28	30	35	28	23	22	28	31	18
TCGCACAGAGTTTTGT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GCATAGACCATCGAAT	ref_4553_fdr	23	25	22	21	17	26	19	26	16	18
CTATATGACGAGCTAT	ref_4553_fdr	50	44	71	57	46	57	40	46	62	55
AGCATTCCGTAGGATC	ref_4553_fdr	7	22	18	28	17	15	30	11	20	12
TTTTAGACAAGTGTCC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCATGCAAACTTT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGCCTGTCGTCCT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTCACACCAAACA	ref_4553_fdr	29	21	17	22	20	29	22	17	17	17
TCGTTTCGGTCAGGAT	ref_4553_fdr	26	27	37	27	32	29	26	35	34	23
AGATATAATTACTCAC	ref_4553_fdr	6	13	2	2	12	1	13	5	11	1
CCGTGACAGCAACTGC	ref_4553_fdr	30	65	38	41	63	24	80	20	85	22
AAGGCCCCTCGCGAAT	ref_4553_fdr	23	40	40	35	36	29	24	26	32	25
GTTACAGGGGTCGACG	ref_4553_fdr	98	207	77	86	187	71	195	74	275	79
GCCGCTGGTTCAGACT	ref_4553_fdr	111	158	153	128	141	107	170	119	169	73
CGCATCCCCGGATACT	ref_4553_fdr	0	3	0	2	1	2	5	1	8	1
TTCCACATGGCTATCC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTATACTGTGGT	ref_4553_fdr	22	29	19	13	23	17	19	19	26	12
TCATAACTTTTGTATA	ref_4553_fdr	27	28	41	38	28	47	29	22	36	28
TATTCCTTGATTTTTT	ref_4553_fdr	43	49	54	41	52	42	56	33	54	46
CACAAAATCGTGTCAC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCTCGATCTAGTA	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGCTGGTACTCAT	ref_4553_fdr	8	6	11	5	12	9	12	3	11	11
GTTTCTGTCTGTGCTC	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CACCACTTCCACACAT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTTGACGTCCATGACT	ref_4553_fdr	44	45	36	53	39	46	54	45	60	30
CCTCGCCATCTAGCGT	ref_4553_fdr	3	11	2	1	17	1	11	5	26	2
CTATGCCTCTGAAGGA	ref_4553_fdr	10	20	23	14	11	9	22	13	32	10
TAGACTCTGCAACAGA	ref_4553_fdr	34	26	51	41	40	52	30	28	47	30
TACACGTTCGTGCCTT	ref_4553_fdr	1	15	2	3	12	2	18	5	17	3
GTATGCGTGTATTGTA	ref_4553_fdr	23	33	35	24	19	16	23	13	17	18
TGTCTCGCGCACGTTT	ref_4553_fdr	71	59	90	74	66	62	60	71	64	65
CGCAACTGAATGATAT	ref_4553_fdr	13	17	26	15	16	21	12	13	23	14
TCCAAGTTATTACCGT	ref_4553_fdr	105	114	128	107	95	116	120	69	113	88
ATCAGATTTAGCGTTC	ref_4553_fdr	28	38	28	26	31	21	31	21	26	25
AGCATTGGTTAGTTTG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCTCATACCGTCT	ref_4553_fdr	45	54	68	28	41	46	47	55	50	54
ATTAATTAGTTTTTGT	ref_4553_fdr	4	14	12	8	19	10	5	9	15	11
CCAATTCAGTAGCTAA	ref_4553_fdr	10	15	10	9	16	6	8	12	11	3
TGCGTTTAACCGCGTG	ref_4553_fdr	6	7	6	7	7	12	4	9	11	11
CGCTCGGCGCCTGGCC	ref_4553_fdr	21	25	30	28	31	27	31	21	21	36
TTGATTCCACTGGAGC	ref_4553_fdr	98	95	111	116	91	93	108	93	111	96
TAAGATTTTCATGTCT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GACTATTTTGTGATGC	ref_4553_fdr	110	127	133	141	110	108	125	136	149	117
GTCGTCTAAGTCACAA	ref_4553_fdr	32	25	41	27	28	26	26	21	23	16
CGTATTGGAAGAAGGG	alt_4553_fdr	109	122	170	114	137	129	112	142	139	121
TTGCGTGCGCTAATAT	ref_4553_fdr	44	51	70	44	34	42	51	33	65	59
GAGTCGCGATGGGCGC	ref_4553_fdr	89	95	130	117	93	116	102	116	98	90
TTTTATTTACTCAAAT	ref_4553_fdr	37	17	31	36	25	16	34	35	31	34
AATGCACCGCATTAGC	ref_4553_fdr	27	32	31	29	36	29	30	28	35	21
CTTGCTGGCGTCAAGT	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTCATAATGGGTG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTCGTCACTTCCT	ref_4553_fdr	2	2	5	3	5	1	2	3	5	3
CCTTATTCTGATTGGA	ref_4553_fdr	17	14	16	10	25	8	25	3	10	5
TGACGTGCCCATGGCT	ref_4553_fdr	60	67	64	59	60	63	61	69	47	53
CGTCAGTCCGGTTTTT	ref_4553_fdr	51	55	66	68	86	57	69	57	70	57
GTATCCGTCAGGGATG	ref_4553_fdr	277	312	331	318	362	303	369	321	366	272
ATACTATGATTTTTCG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTACGTCGTTGAG	ref_4553_fdr	26	25	22	18	23	15	19	23	16	24
CGCGCCGGTTTCTTCG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGATAGCTCTTAG	ref_4553_fdr	5	15	5	6	15	7	12	8	11	1
ATGTTCGTATTTGACA	ref_4553_fdr	19	19	24	13	6	10	15	16	8	13
TGTGCGCTTGTATTGG	ref_4553_fdr	0	0	0	0	0	0	0	0	0	0
CCATCAATTGTGAATC	ref_4553_fdr	9	12	16	18	16	14	17	14	12	7
TTGGTGATCGCGTTTA	ref_4553_fdr	27	30	26	26	17	18	30	12	16	19
ATGTGTGGTTCAGCCC	ref_2040_RC	3	5	2	6	5	4	4	4	4	7
TGTTTCCTTTGCTATG	ref_2040_RC	24	30	26	18	19	28	21	22	42	22
TCTTGATAATTCAAAA	ref_2040_RC	24	42	34	27	40	39	27	13	45	18
GCACCCAATTAGGATT	ref_2040_RC	67	64	69	70	52	69	62	64	63	52
AGCATACACCTTGCCA	ref_2040_RC	69	70	71	62	78	75	70	66	85	65
AGCTTTACCAGTAAGT	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TGGGCAACTCTGGTTA	ref_2040_RC	10	8	6	6	7	8	9	5	4	6
GCTAAGGCCCACTTAT	ref_2040_RC	58	81	88	63	69	69	77	83	76	58
AGAAGAATCTTACACT	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
CTGTGAGTAAGAATTG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
CTATTGTTTAACCAAG	ref_2040_RC	32	37	38	45	44	51	43	34	54	38
CCCTTACATGTACGAG	ref_2040_RC	19	25	35	19	17	27	35	28	35	27
ATCTTCGCGCACATCC	alt_2040_RC	102	94	118	89	96	89	110	99	93	94
TTAAGTCGTCGGTGAT	ref_2040_RC	19	19	15	22	12	12	16	18	16	9
ACAATTAGGTTTAATC	ref_2040_RC	86	85	117	88	84	84	86	94	102	75
GGCACGGTACGATGAC	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CTAAATAGGTGGGGGG	ref_2040_RC	300	289	337	327	270	277	266	269	303	243
TCCGTTCCACGCAGTT	ref_2040_RC	53	48	59	49	41	49	59	41	53	41
CTCAATAGTTCTTCGA	ref_2040_RC	10	9	8	13	11	9	12	15	19	4
GCAAGATGTCGGCACG	ref_2040_RC	48	42	62	58	33	53	42	44	49	46
TTTATCCCCGGTGCTT	ref_2040_RC	8	28	12	14	28	6	24	7	21	5
GCCTCTAAAGTAACTA	ref_2040_RC	45	50	27	37	58	35	49	43	53	25
CGCATCCTGTGCGTTA	ref_2040_RC	2	1	2	4	5	0	1	0	1	1
TCTGACCCGAATTAAA	ref_2040_RC	207	188	254	193	215	193	216	214	199	183
CACTCACTCCAATTCA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
GATCATAGTTCTCAGA	ref_2040_RC	53	38	67	46	54	45	52	45	50	48
GTCTGGGTTCTGTTCC	ref_2040_RC	25	38	38	36	36	27	45	27	33	29
CAGCCCTAATAAGGGG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TGAGTGGTTCTTGGAA	ref_2040_RC	35	27	38	40	28	28	28	27	44	23
CCAAACGTTAGCGTCC	ref_2040_RC	57	43	60	43	48	49	36	33	56	51
TCCGATCGACATTTAA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
CAAATACAATACGCCT	ref_2040_RC	2	4	10	10	14	4	9	10	4	6
ACGTTTGACTGGACCC	ref_2040_RC	60	80	75	52	71	60	74	60	62	45
GCGATATACGAGTCTG	ref_2040_RC	35	36	54	43	40	29	29	43	42	32
CGGTACTTATTTAGAG	ref_2040_RC	42	37	55	55	49	45	54	39	61	35
TTGTATGCTTAAGTAG	ref_2040_RC	9	8	6	10	14	10	4	9	10	3
GTCCACATCTTGTCGG	alt_2040_RC	33	27	36	42	25	41	28	39	43	39
TCTGACCCGAATAAAA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
ATCTAAACAGAGTTCC	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
CTTGCGGTTTTTCAGG	ref_2040_RC	5	9	9	3	7	6	3	7	11	8
ACGTTGCCTATCTCCC	alt_2040_RC	20	18	21	27	14	13	8	20	10	22
ATTGCACCGACTAACC	ref_2040_RC	8	11	12	10	13	12	15	18	12	13
GTGCGAGTTTCGGCTT	ref_2040_RC	50	37	56	40	42	48	47	34	40	33
ACTGACCCGAATTAAA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
ACTCTGTCCCTGGCGT	ref_2040_RC	75	87	73	74	85	65	92	68	77	54
CTTATGGGAATATTGT	ref_2040_RC	75	57	66	72	67	49	89	43	75	44
TCCCCTTTGGCGGATA	ref_2040_RC	28	54	41	29	57	28	44	32	52	32
TCAGTACGCGAGAGCC	ref_2040_RC	35	30	18	29	22	21	33	17	24	19
TTATTACCGTTGAACC	ref_2040_RC	4	17	15	14	12	18	10	8	22	9
CTAATTAATTATTCTA	alt_2040_RC	59	33	51	41	41	62	47	41	62	53
GTGCCTGATTATCTTT	ref_2040_RC	132	118	129	113	109	106	96	85	112	107
GGAGTTAGGAGGGCGG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
ATCCCTTTGGGACCCC	ref_2040_RC	60	49	68	38	46	58	44	66	57	58
AGTCCATACACAAACG	ref_2040_RC	60	58	60	50	56	62	78	51	63	43
CCTGTGTTCTCCCCAT	ref_2040_RC	3	15	8	12	5	6	16	6	12	4
TCTCTTTGGCTTTGCG	ref_2040_RC	34	33	48	39	41	45	41	34	38	35
AATGAATCAATGAGTG	ref_2040_RC	63	55	78	63	51	63	64	47	62	62
TTCAGCCGGCGATGAC	ref_2040_RC	84	109	100	84	118	83	115	74	127	72
GAGCCGCACCCCTTTC	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TCCTGCGTCTTATCGA	ref_2040_RC	16	13	11	9	18	13	16	8	15	16
GGAACTGCGCTGCGTT	ref_2040_RC	0	0	3	1	0	0	2	0	0	0
GTTCGCGCCGGCGATA	ref_2040_RC	7	9	16	25	18	18	21	14	12	15
TACAGGTGGCTATAGA	ref_2040_RC	79	92	83	76	108	78	84	76	91	79
CATTAACTACTTTTGG	ref_2040_RC	110	86	117	119	90	93	109	103	100	78
TTGGTATTATCAGTGA	ref_2040_RC	22	26	22	21	21	29	28	16	29	26
ATATTAAGGCCTATTA	alt_2040_RC	85	40	89	87	47	64	39	73	41	62
ATTTTTTTGTATGTGG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
CAACAGATATCGAGAC	ref_2040_RC	42	31	48	42	42	37	29	42	37	44
CAGTCTATTTTGCAGC	ref_2040_RC	1	13	5	6	9	5	10	3	4	3
GGTCTAGGTTATACAC	ref_2040_RC	8	7	2	7	8	2	6	12	9	6
TCAGGCTTTCATTTTT	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TTGACGACTTTCGATT	ref_2040_RC	9	11	13	10	14	11	13	7	20	17
AGGAGGGGTGTACAAC	ref_2040_RC	3	7	6	3	4	6	8	9	4	5
CTTCGCGCGCACCGGT	ref_2040_RC	70	82	85	72	73	76	104	67	81	70
TCCCGGTTGCGCTTAC	ref_2040_RC	48	64	36	32	43	49	45	28	57	35
TCCTCTATTCGTGATG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTGTGATATCGC	ref_2040_RC	7	10	4	3	4	8	7	9	9	7
CATGGCATCCTCCTTT	ref_2040_RC	21	23	33	16	20	24	30	21	29	16
TTGACGTAAATGTAGC	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TGCCACTTCTTTGTTT	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TAGCTCTCTTTGCGAC	ref_2040_RC	155	185	215	170	185	154	196	168	191	175
ACAAGGCACACTCACT	ref_2040_RC	12	20	21	15	16	12	25	14	36	10
TTATGAGGATAATACA	alt_2040_RC	66	56	77	69	32	72	49	61	32	55
TATAGGTACTTAAGAG	ref_2040_RC	71	54	78	55	66	52	64	56	60	58
GCTCGAGACTGTTTTT	ref_2040_RC	53	78	71	53	61	64	53	54	45	49
AGGTTTCTAAGTTGTG	ref_2040_RC	25	36	29	24	31	29	36	27	32	37
CGAATCACCATATATG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
AGACGCTCCAGCACAT	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
CAGTGTAAGTTGTGTA	alt_2040_RC	266	154	329	283	163	244	193	240	201	228
TACATCAAGTGTATCG	ref_2040_RC	55	43	60	48	42	47	55	52	56	44
TGCAGACGGGTTATCA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
ATCATGAGCCCACTTG	ref_2040_RC	13	13	20	10	20	19	15	17	15	21
CTCTGATCCGCATGAT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TTGAATGGATTCGGAT	ref_2040_RC	17	9	20	27	20	15	16	9	18	16
ATACGACATCGGGACT	alt_2040_RC	161	79	184	181	67	162	74	138	85	142
AGAGAACCTCTAGTAG	ref_2040_RC	133	177	166	137	151	168	151	149	145	116
CGCAGAGGTTAGTTGT	ref_2040_RC	21	29	33	25	24	19	34	27	22	14
TCGGGTGGCCATCGGG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TCTTCTGTACCACAGC	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
ACTTTCGGGAATTCCA	ref_2040_RC	32	48	46	29	52	43	44	49	51	39
GGCGGTAGACTGTCGC	ref_2040_RC	30	41	23	17	26	17	26	14	30	18
GTTGATCATCTACATA	ref_2040_RC	4	2	2	6	5	5	1	3	0	6
CATTTGCGATTCGGTG	ref_2040_RC	136	151	156	123	124	123	132	107	154	111
CACAGCCTCCATTGTC	ref_2040_RC	0	1	0	0	1	0	1	0	0	0
CCCGCGATACAGATAT	ref_2040_RC	3	28	3	2	17	2	24	2	23	3
AATTCCGACGGTCATC	ref_2040_RC	80	90	117	95	91	76	77	85	105	71
GGGATGCCTTTCCGGT	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTGTTTGTTTTA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TGTGACGGTATTGGTG	ref_2040_RC	38	44	46	43	44	36	38	41	35	39
CACACGCTCCGCCTAT	ref_2040_RC	36	45	38	23	33	24	38	28	29	26
TGGTAACCCTTGGTGT	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
GCAGCTATGTAAACTT	ref_2040_RC	40	38	67	54	52	41	59	32	44	46
ACTGAATATTGTTGCC	ref_2040_RC	26	24	34	26	36	26	27	31	28	27
CGGATCGTTCGAGTGA	ref_2040_RC	6	10	13	11	14	11	18	10	17	14
GTGCCCTAGTGTCCAT	ref_2040_RC	6	4	8	18	10	2	7	3	6	8
GTACACCGCCACTATT	ref_2040_RC	43	75	59	59	74	43	81	52	79	44
GTAAGGAACACTCGCT	ref_2040_RC	10	14	18	14	20	12	14	10	27	14
TTGCTTACGCTACGTA	ref_2040_RC	7	4	8	2	6	6	4	10	4	10
AGGAGAGGTCCCTGCC	ref_2040_RC	5	8	14	13	12	11	17	15	10	13
GATATCTTTGGTGATT	ref_2040_RC	33	29	33	23	46	31	26	25	39	29
GCCTTCCGGGTTTTCA	ref_2040_RC	24	31	41	28	24	22	23	26	26	29
TGACGCTCCAGCACAT	ref_2040_RC	129	151	171	159	191	137	162	151	177	142
GGTAATGGTTATATAT	ref_2040_RC	186	215	210	203	183	180	213	155	205	120
AATGAGTTTTACAGGG	ref_2040_RC	77	152	121	116	130	122	142	117	142	101
CGGCTGCGTCTCCGAC	alt_2040_RC	0	1	0	0	0	0	0	0	0	0
GTTAATGGGTTCTTCT	ref_2040_RC	23	25	23	16	24	27	29	30	21	18
AATAGTGCAGTCGTAG	ref_2040_RC	59	57	75	76	65	49	80	56	90	58
TGTGGTTATTCGAGAG	ref_2040_RC	38	43	36	42	36	42	43	39	39	32
AGGCACGGTCTGTGCG	ref_2040_RC	49	43	51	49	59	56	52	46	48	50
TTCTTCACCTCTTCTA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TCTGCCCCGAATTAAA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TTGCAATCCTTCGGTC	ref_2040_RC	30	32	39	43	26	40	39	26	42	29
AGAATGTTTGTGCTAC	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
CGTTTGTTTTGCAACA	ref_2040_RC	57	47	54	57	60	38	51	46	46	44
TTTTGTCACATTATCT	ref_2040_RC	13	22	17	6	20	20	15	18	24	14
GTTCAATCGGTATATA	ref_2040_RC	41	70	78	56	54	70	60	48	77	50
CTGCGTTCTTTATCGA	ref_2040_RC	55	35	59	49	47	54	47	36	51	38
TTCTACCAGTTTTTGT	ref_2040_RC	26	23	16	14	15	20	19	15	14	22
AGCACCTGCCCGCTAG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
ATAGCCTTCGCTCCAC	ref_2040_RC	14	27	24	21	40	32	35	17	36	22
ATTTTAGTTGGACGTG	ref_2040_RC	4	0	5	1	7	2	5	2	5	4
ACGCACGACAGTGTTC	ref_2040_RC	52	39	67	38	61	42	42	44	50	50
CGCCATCCTCGGGTTA	ref_2040_RC	3	5	3	7	6	1	4	4	12	2
CGAGTGGGAGGTAGTA	alt_2040_RC	814	457	1004	892	516	781	466	805	476	781
TCGTGTGGTACTTAAG	ref_2040_RC	42	47	33	41	57	41	47	35	51	26
GTCCCTCCTTATCATT	ref_2040_RC	25	15	19	26	28	15	27	15	26	22
GTTAGGTGTCGCTGTC	alt_2040_RC	61	30	81	49	27	58	37	55	43	46
ACTATCGCTTCCGGGT	ref_2040_RC	7	6	10	11	4	8	9	10	12	3
ACATTTTACACGTCCA	ref_2040_RC	26	30	26	18	31	20	23	20	15	24
ACCCTATTCTCTGGAA	ref_2040_RC	50	59	58	35	49	44	69	45	59	36
ACTCCAGCCCCTTTGG	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
TGACACATCATGCGGA	ref_2040_RC	35	45	66	41	56	56	49	46	49	57
AATAGTCAGATTCCCG	ref_2040_RC	11	8	15	15	13	12	18	7	14	8
ACTCGTTAGGCTTCAT	ref_2040_RC	15	20	16	18	16	17	17	17	20	13
CGGGTAAGCCTGCCAT	ref_2040_RC	48	46	44	40	38	39	40	42	41	32
GCCCGTTGCAACGGAA	ref_2040_RC	20	31	38	35	20	24	20	29	23	23
CCCGTTTATGATAGAA	ref_2040_RC	26	21	31	18	28	17	29	19	36	19
TCAGACCCGAATTAAA	ref_2040_RC	0	0	0	0	0	0	0	0	0	0
GGCCATTTGCCAAAGG	ref_2040_RC	128	106	125	115	114	130	124	125	118	83
TGACCATGCATTATTC	ref_2040_RC	73	76	104	81	92	77	110	85	72	64
AGCGCGTTGTTTTTAT	alt_1522_RC	30	20	35	39	16	23	22	38	12	16
GACCTTTTTATTCCTG	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CGGCGTACGTAGCTCG	alt_1522_RC	828	363	939	776	441	750	451	716	447	701
CTTGTTGCCTGGCCCT	alt_1522_RC	26	7	26	18	7	14	10	18	11	15
TAAGAATGTGTTAGGC	alt_1522_RC	77	50	109	74	44	79	45	77	47	61
GCGTCCCGCCACGGAT	alt_1522_RC	42	22	41	50	19	34	31	30	23	28
CTGCTCTTCTTCTCTC	alt_1522_RC	21	5	21	17	10	14	10	9	8	8
ATGTGCTCTCAAAGGC	alt_1522_RC	110	52	133	106	71	78	72	85	78	107
CTATGGTGTGTCTTGA	alt_1522_RC	107	58	123	99	52	109	77	102	67	94
GGTCGTGGTGGGGTGG	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CTGTACCGAAATTATG	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CGCTAGTTGTCGTACA	alt_1522_RC	48	63	74	67	59	77	43	44	48	56
CTCTTCGCACCTCCGC	alt_1522_RC	139	89	144	126	94	148	95	130	94	101
CCGGGTTCGTCACGAT	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
GGGACTTTGTTGGTTC	alt_1522_RC	20	10	23	16	11	23	4	17	7	22
GCCTTATCCCGATTTG	alt_1522_RC	73	48	105	114	58	78	70	95	57	70
GTTGCGTAAGTTTATA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
ACTTTTGTACGTCCAA	alt_1522_RC	175	95	191	136	94	142	90	125	84	129
TCATAGGGAAGTAAAC	alt_1522_RC	101	82	135	129	70	114	72	102	80	96
GCACTATCTTACTCGC	alt_1522_RC	107	68	118	111	62	92	68	135	74	100
GGACGGTATCCACGAG	alt_1522_RC	27	8	15	27	10	18	11	15	12	24
GCTGGTCGTAGGGCGT	alt_1522_RC	36	29	71	51	31	51	24	49	31	45
TGTTAGGGACCATATG	alt_1522_RC	154	78	156	166	105	145	106	131	119	144
TCGACATACGCTTCCT	alt_1522_RC	24	10	40	21	13	28	13	24	9	19
TGGAAGGCATGTCTGT	alt_1522_RC	74	43	94	85	43	82	47	65	54	63
TCAGTGAGTCGCCAGA	alt_1522_RC	34	32	43	32	14	40	37	37	17	42
CGGTTACATTGAGTAT	alt_1522_RC	140	102	169	139	108	143	119	131	95	157
CGTAATTGTTTAGTCC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TATATATTCGATTTGA	alt_1522_RC	159	105	176	157	74	149	100	150	114	138
CTATCCTGTGCCGACG	alt_1522_RC	52	32	64	82	33	62	42	51	49	58
TTCGGCTCAGCGCGGA	alt_1522_RC	4	3	17	13	9	7	6	13	8	16
TGTTATATCCTTATGG	alt_1522_RC	55	30	59	51	17	32	23	45	23	38
TTGTCACATCGGACTC	alt_1522_RC	21	13	21	28	9	16	10	10	18	18
ATAGTCATAATTGGTT	alt_1522_RC	293	160	344	299	171	292	153	293	201	280
CTGTGCTCATCCCGCC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CGGTATGCTATCTTAT	alt_1522_RC	121	63	141	122	76	124	56	112	54	97
GTACTTGGGCTATCTA	alt_1522_RC	111	50	106	82	61	98	65	92	59	62
CGCCGCTCCTCTCTAC	alt_1522_RC	4	6	7	5	5	7	3	11	5	9
GGTCTAAGTTCTGGGG	alt_1522_RC	167	112	258	160	98	183	100	192	113	135
TCACCCTCGCAGGTTT	alt_1522_RC	20	21	34	17	5	28	23	24	17	28
TAATCTCCCGTTCCCA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCTAACCTATAC	alt_1522_RC	171	97	190	139	106	147	117	154	99	134
GTGAATTAATGATCTC	alt_1522_RC	139	66	140	125	71	104	59	107	63	96
TCGTGTGCATGCTTTC	alt_1522_RC	13	14	27	20	7	13	12	18	12	15
GCCGTGCTCAGGTTTC	alt_1522_RC	0	0	0	1	0	1	0	0	0	0
TCTCTTTGAGGGTGTT	alt_1522_RC	16	3	9	18	6	9	5	12	12	15
GTATAGCAAGGTGCGA	alt_1522_RC	82	53	99	87	70	73	71	65	68	90
TCTGGGATCTTAAATA	alt_1522_RC	71	53	89	64	42	65	44	74	43	52
CCGACTTTAATACGCT	alt_1522_RC	54	29	78	76	29	56	37	57	37	47
TGACCCATCATTAATC	alt_1522_RC	17	6	18	19	9	22	10	21	8	14
TAATGCGGTAGCAAAC	alt_1522_RC	21	5	29	25	9	17	15	18	8	21
CGTCTTTGTAAATTGT	alt_1522_RC	163	103	194	197	94	161	107	159	100	181
CCGCGCATAGTAAACG	alt_1522_RC	57	27	73	56	33	59	36	41	33	52
TAGGACCCAGCCCGGT	ref_1522_RC	17	11	31	30	13	22	11	28	20	26
ACGCCTTAAGCGCTAC	alt_1522_RC	567	331	642	566	306	526	329	532	375	468
CTCACTTCTGATTGGC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TTTTAATTGTTTCGCA	alt_1522_RC	48	28	47	53	28	40	27	40	22	30
GGGTCTGTAAGTGTCC	alt_1522_RC	50	33	66	48	32	47	33	45	35	42
CCCGTTGGTATAGTCC	ref_1522_RC	7	4	5	3	3	0	6	5	7	1
AAACTTTCTACCCACC	alt_1522_RC	109	62	111	114	65	93	51	97	64	112
AGTTTCCTTTATTTAT	alt_1522_RC	108	43	157	123	44	116	48	106	46	104
TGTCCCCGCAAATAAG	alt_1522_RC	36	13	49	36	21	34	21	36	18	22
TTTGTCAAGCTCCAAA	alt_1522_RC	173	93	221	146	94	147	90	145	90	148
GATGTATGCCCACGGT	alt_1522_RC	33	18	37	32	19	16	13	25	10	23
AACTATTCCTGGTAGC	alt_1522_RC	92	35	109	80	42	69	42	69	63	70
CGAGCCTGAGTGGTCG	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TCGATCAAGTAGGCGA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TGCGTGTGCCGCCCCA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CCCGCGTCCACGTCGA	alt_1522_RC	138	106	203	157	114	160	104	141	122	158
CACTCGGGCGGTATAA	alt_1522_RC	54	17	67	47	25	54	35	44	26	39
GTATATGTTTGCCTTA	alt_1522_RC	26	19	45	45	25	31	20	36	16	27
CTTTGGCTTGATTTTT	alt_1522_RC	331	135	374	310	144	311	154	276	153	251
TCCCCCCGCGTTCGCC	alt_1522_RC	21	34	28	30	34	12	50	18	45	26
ATATGAGAGGTAAGGT	alt_1522_RC	0	0	0	1	3	2	3	0	0	2
CCGTTACCCAGAGGTA	alt_1522_RC	55	69	86	68	69	72	60	71	61	53
ACGGTGATACGCGCCC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
GAAATCGGCAGCAAGT	alt_1522_RC	73	39	86	55	30	57	59	71	32	48
TTGGCGTATATGTTGA	alt_1522_RC	37	24	57	44	25	36	31	41	30	40
GCGTCCTTTGCCAAGG	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TTCGTTTCTGATGGGC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TATGGCGACGTCTAGA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
ATCATGTTGTTTTCAG	alt_1522_RC	38	28	57	39	29	51	31	49	37	52
TTAAGGTTCTCGATGT	alt_1522_RC	42	25	44	43	22	46	29	28	27	37
CTACTCTATCCCGGCG	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CCCATAGGCTGATACG	alt_1522_RC	65	31	50	54	28	34	41	43	26	36
CAAACGGTGTGTATGA	alt_1522_RC	37	22	48	35	31	45	23	39	25	28
TAATTAATCTCGGTTC	ref_1522_RC	221	142	219	185	139	191	124	157	168	171
ACATCCTCTTAAATAG	alt_1522_RC	89	48	119	95	67	83	51	91	50	80
GAAGACCTATGCGGAC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TATCGCGTTCGCCTCG	alt_1522_RC	50	42	91	59	29	76	33	58	41	54
CCCAGGGCACGAATCT	alt_1522_RC	69	42	99	81	36	55	42	81	56	87
CATTGTGCCACATTTT	alt_1522_RC	115	101	134	138	106	113	102	117	90	105
AAATTCGGTTACCGGG	ref_1522_RC	54	20	39	29	14	33	16	19	22	35
GCCGTCATCTGCTGCT	alt_1522_RC	0	3	1	3	4	0	2	0	2	0
ATCACGCTGAATCTTG	alt_1522_RC	86	42	58	66	38	65	39	79	61	60
TCTCAGGTAATGCTGA	alt_1522_RC	163	86	209	164	87	136	90	150	105	132
TCCGGCGTACTCTTTA	alt_1522_RC	127	87	91	82	88	91	140	71	117	76
AGAGTCTGGGGGGGTC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
GCTAAAGTACCCTGAT	alt_1522_RC	158	65	168	121	86	141	88	121	83	122
GGATAGGTTCGATGGC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CCGGTGCCCTCCGACC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTTTATTGTTTC	alt_1522_RC	41	14	52	44	19	44	19	45	19	45
TTATATAGTGTTTGGC	alt_1522_RC	64	45	101	92	47	75	46	70	45	64
GCATTGTAGTCGGATT	alt_1522_RC	67	52	94	99	58	75	63	72	61	61
CACACAGCACCGGGTC	alt_1522_RC	57	35	53	37	28	43	25	51	29	32
TTTTATTTCACTTGTT	alt_1522_RC	131	54	143	129	48	130	62	159	54	116
GTCTTCCACGAGCCTT	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
AAGGGACGTGTATTCA	alt_1522_RC	33	20	28	38	23	26	24	36	13	26
CCACACCGCCCTGACT	alt_1522_RC	4	10	13	9	1	9	10	10	6	3
GTCCGCTGCCGTCTTG	alt_1522_RC	93	64	131	106	61	117	81	115	79	104
TCATGCTACGTGCTTT	alt_1522_RC	20	8	19	10	6	8	21	19	14	10
TTAAACGAACTACTCT	alt_1522_RC	43	29	69	52	34	59	22	52	23	53
AACTCCATAATAATAC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TACTTGATGAAATCTT	alt_1522_RC	63	33	79	75	45	89	30	68	41	60
GTCTTTAATCTTCAGA	alt_1522_RC	92	51	89	75	55	92	51	79	72	91
TCGCACGAGCTAGATC	alt_1522_RC	350	246	454	410	235	347	243	327	229	358
GTCGCAAATATCCTCA	alt_1522_RC	45	20	42	20	20	46	17	41	17	34
TTAGGCGCTTACATTT	alt_1522_RC	141	59	180	164	70	145	59	131	85	122
TTTTACCGCGGCCCCA	alt_1522_RC	60	59	54	61	63	52	65	61	68	48
GTCAACGTCTCTGGAT	alt_1522_RC	21	10	14	21	6	16	6	17	7	15
GCCCGGTTTTGTATAG	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TCTATTTCTTATACTT	alt_1522_RC	59	26	56	53	21	54	29	51	37	45
TGCACCGCACGCCGCC	alt_1522_RC	359	230	436	381	206	396	195	359	218	365
TCTCTCATCGTTAAGT	alt_1522_RC	34	44	51	39	39	27	43	26	45	34
AACGACGACGCTAGCC	alt_1522_RC	123	60	154	143	66	113	55	135	70	112
TCCCACCCCGACCTAT	alt_1522_RC	180	112	170	217	98	175	102	182	114	141
CGAGTAATTCCTAGAC	alt_1522_RC	102	45	107	111	43	86	48	82	78	74
TGCTCGGGCATTTGGA	alt_1522_RC	108	78	136	141	63	123	70	126	92	99
TTATACGATCGCGTCT	alt_1522_RC	153	85	180	145	96	148	76	151	95	141
CGGCAGATCTATATCA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
AAGCACTTTACTGCCC	alt_1522_RC	137	63	161	157	68	133	62	129	89	144
CGGGGGTCTAAGGATA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
GGTTCGGTCTAACTGC	alt_1522_RC	82	72	97	89	48	92	49	94	62	69
ATTGATTGCGGTTTGG	alt_1522_RC	52	50	96	42	42	60	52	63	39	63
CCTTCTAAAATTAAGA	alt_1522_RC	8	5	22	11	8	11	7	11	4	6
CATTCTCTATGGTACC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TGGAACTCCAATTGTC	alt_1522_RC	42	22	43	37	19	30	19	29	20	27
TGAATTGAAGTGAGGT	alt_1522_RC	3	3	2	2	2	0	0	0	1	3
GTTCGCAAACCTCTGA	alt_1522_RC	61	40	89	76	31	72	42	61	29	71
GCCCATCTTGCTTCAC	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
ATATCGTCTTCAATCA	alt_1522_RC	129	53	138	118	65	105	43	124	69	114
ACGAGCAGCATGCGGA	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
AGTAGCCAACCCGAGT	alt_1522_RC	33	21	33	27	20	20	20	35	27	24
CTCATCGTGCATGTTA	alt_1522_RC	28	29	32	26	30	29	28	23	23	39
ATGGGGCAAGTTAGTA	alt_1522_RC	343	190	443	344	190	364	196	352	211	375
TGGTTATGCCTCATCA	alt_1522_RC	70	42	103	79	39	66	50	80	49	70
GCGCTTTGGAGTTAAT	alt_1522_RC	75	19	69	55	40	47	21	43	22	42
CAACTAACATGGATGT	alt_1522_RC	22	18	35	20	18	27	15	22	16	24
GATCAAGTGCCTGCAT	alt_1522_RC	44	22	58	62	33	54	32	42	25	53
TGCTTACCTGCTACCT	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
TTTGGGTGCCGGTTCT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
AGGGACGATGACAAGT	alt_1522_RC	0	0	0	0	0	0	0	0	0	0
CCTCCCGCCGCCACCC	alt_1522_RC	262	246	386	307	237	279	292	303	258	278
GGGTGAACCTGAGCTT	alt_3879_missing	3	2	2	1	5	1	4	2	2	2
CGATTCGCCTGTTCTA	alt_3879_missing	18	43	28	9	44	15	45	14	51	19
CTTTACTCTGCACAAC	alt_3879_missing	11	30	22	20	38	15	33	5	32	16
CTAGAAGTATTTTTCT	alt_3879_missing	6	16	7	10	11	12	16	6	26	5
CATTCTAGATGTGCAG	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CCGCCCGGACATTTGT	alt_3879_missing	22	38	21	21	30	20	38	16	33	14
AAGTGTAGAGCCCGGG	alt_3879_missing	21	36	32	12	41	8	39	9	40	13
TGTTGGGTGTCACCTT	alt_3879_missing	18	20	7	12	20	5	18	13	16	9
CCTCTTTAAACACCAG	alt_3879_missing	4	29	15	9	16	9	20	6	18	9
TCAGGACGTTATAAGC	alt_3879_missing	6	10	2	3	17	4	7	4	14	3
CCTTCGTTAATCTTTC	alt_3879_missing	10	35	21	30	46	11	38	12	49	8
ATCTCCTTATTCGCAA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TTAACCCGTGGTCTAT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CCAGGTACACAGACCG	alt_3879_missing	4	20	14	4	22	13	25	11	23	7
ATTTGAGCATGATGCT	alt_3879_missing	8	47	11	10	25	9	22	15	43	12
GCAAAAGATGCAGGCA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TGTAAATTTGCGGGAC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TCCGCGATGCTATTGT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TGTCAAAATTGCAGAA	alt_3879_missing	8	29	11	7	29	17	23	8	30	7
GGGCAGAAACGTCTTT	alt_3879_missing	13	30	13	15	21	9	22	9	28	5
TAGCCAGCTGAGCGTC	alt_3879_missing	1	4	3	5	9	0	7	2	8	1
GGTCTAGCGTTTACCT	alt_3879_missing	5	5	1	0	3	0	6	0	0	2
TCTGGGCACTTTGGTA	alt_3879_missing	3	4	5	1	5	3	8	1	8	1
TGGGCTCGCGGGCTTC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CTTACGTGCCTCTGTA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CCTTCTCATTATACAG	alt_3879_missing	0	6	1	4	3	2	5	0	7	2
TGCGATATCTCGGGAT	alt_3879_missing	1	6	1	1	7	1	5	2	15	2
AGTTGCTCCCATCTAC	alt_3879_missing	3	9	6	3	15	7	7	5	18	6
TCGCTCTTGGTTTGCG	alt_3879_missing	3	14	13	8	12	9	18	8	18	7
ATGGTTATTTCTGTGT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
ACCGCAAGAAATGAAC	alt_3879_missing	9	18	11	3	19	11	31	3	17	6
GTGCAGCCCACAAGGG	alt_3879_missing	13	34	26	19	34	27	50	23	41	11
TGGTCCTTCGCTCGGC	alt_3879_missing	0	3	0	3	7	0	5	2	6	1
GCGCCATCTTTATTAT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
AAATTATCCGATGTTA	alt_3879_missing	22	60	41	20	47	29	55	27	68	20
TTGCCGAGGGCCATCA	alt_3879_missing	18	40	18	18	33	12	26	5	29	15
GTTACTGGGCCCCTTC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CCCTAGTCTTCTGAGG	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GAAGTCTTTGTTCGGG	alt_3879_missing	55	126	61	42	119	46	127	36	116	24
CGTTTTCTTCTGTCGA	alt_3879_missing	43	94	40	39	77	40	80	25	98	40
CGAATGTTATCTATAC	alt_3879_missing	66	161	82	57	143	83	143	68	162	53
GCAGCGTTTGACGTTA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TCCCCAGCTTCCGCCA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TAGTCAGAAATTTCAG	alt_3879_missing	20	39	22	20	35	10	34	13	28	18
TTAATTCACGGCTTCA	alt_3879_missing	3	10	6	4	11	6	12	5	8	3
CACCTTTGTTGATGCT	alt_3879_missing	4	6	1	3	3	0	4	6	9	1
AAACGTTGCACACAGT	alt_3879_missing	20	48	27	30	42	21	50	26	47	16
ATAATTAACCAAAGTT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CCTTTTACGGCTATGC	alt_3879_missing	1	12	5	1	7	5	8	4	12	2
TGTTCCAATGATCGTA	ref_3879_missing	20	42	27	24	46	19	42	11	41	18
GGCCGTGAAATGTATT	alt_3879_missing	23	27	22	14	40	13	17	9	32	15
CCGTAGTCACGTTCTC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GTTGCAGGAGCAGATG	alt_3879_missing	17	32	14	17	34	21	26	13	40	14
ATCAAATGAGCTACGG	alt_3879_missing	2	6	3	5	7	7	8	2	6	4
CCGCCATAACCGCAGC	alt_3879_missing	4	6	3	3	4	4	8	5	3	2
AGCTCGCTTCAGAGCA	alt_3879_missing	13	24	14	13	28	20	26	8	30	14
TACCACAGTGAGGAAT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGTAAAATGCCT	alt_3879_missing	16	30	23	4	32	9	37	19	34	15
AGATAGTATACTTTAA	alt_3879_missing	6	31	8	10	13	12	18	9	12	5
ATTCTGGCCTCACCCC	alt_3879_missing	7	12	8	4	6	8	10	4	9	6
TTCACGGATTGTATGG	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CCGGTCAGAGCTCTGT	alt_3879_missing	16	35	11	9	53	11	68	12	44	5
CTACTCGTTACCTACA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GACTATGTGGGGTTCT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CGCATAGTAACTCTAT	alt_3879_missing	29	50	26	16	68	26	27	13	45	24
CTCCCTTGCCTCTAGA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GGACGTTCCCGACGAG	alt_3879_missing	26	53	29	29	56	24	54	20	65	23
TTTCCCTGCCCCCTAT	alt_3879_missing	4	15	3	10	21	1	13	9	6	7
AGCCCCCCGGCATTGT	alt_3879_missing	6	22	1	4	16	1	26	1	20	4
TAAGGGGTGTCTCTCA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TACCATGCCGTCTCTT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
ATTCCACAAAGTCAGG	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
AACCCAGGTACCCACC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
AATAAACTACAGCCTT	alt_3879_missing	7	18	4	8	14	2	20	9	21	3
AGTATTTAGAATAATA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTGCAGTCGCTA	alt_3879_missing	1	5	2	4	10	1	4	7	7	2
CCTTCAACCAATTTTC	alt_3879_missing	12	49	16	21	57	16	53	18	53	18
CCTCCTCCGACTTTTT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CGAATGTTATCTATGC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GTAACTCCAGAACATG	alt_3879_missing	6	23	14	12	26	7	27	12	33	7
TCATGCCCAGGTTTGG	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TCTCAGGTGAACTGTA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GGTGCATCCCCACCAT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TGGGCGGTGGAGTTCT	alt_3879_missing	5	7	2	2	5	0	5	2	7	4
TCCCATGCTAGCACTC	alt_3879_missing	3	16	4	2	25	3	10	7	8	6
GGGACTTTGTCCATGA	alt_3879_missing	11	21	19	14	25	16	30	14	29	11
CATGGCTACCAGTAGT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TGGTAATCTTCCACAA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CTGCGACGAGTGCCTT	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
ACATCTGGCTCGCTGC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTTTTTGGTGAT	alt_3879_missing	19	66	24	19	52	19	65	23	73	9
CCCACTCGAACCCCCA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GTATTCCTGCGCTCGC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GCGGTTGGGCTTACCT	alt_3879_missing	1	54	5	4	55	4	61	3	62	3
TGTTTTACTCATAGTT	alt_3879_missing	3	5	7	6	5	5	8	3	11	0
AACAACAATGCTGTTC	alt_3879_missing	3	7	3	1	14	2	7	1	12	4
CAATGGGCATCTCTAC	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
GCTAGCTGCGCGCATA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
CGCCCGAGTCACCACA	alt_3879_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTCGCATTAACC	alt_3879_missing	5	19	7	4	20	9	17	5	13	6
CGAAACGGGATGTTAG	alt_3879_missing	9	20	14	7	32	7	19	7	20	9
CACCTGGCTTTCCTTG	ref_964_fdr	1	2	0	3	1	0	0	1	1	1
GTATGGTTGACGACGC	ref_964_fdr	177	130	211	199	130	177	138	176	151	171
GATGCTTCCGCCGGGT	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
GCTTACTCCGGCAAAT	ref_964_fdr	1	1	2	2	0	2	2	0	0	2
GAAATCTTCGTTTCTT	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTAGCTTTCTTAC	ref_964_fdr	5	1	3	1	2	2	3	3	2	0
AATTCGAGATTTATTC	ref_964_fdr	63	50	59	71	50	58	45	56	41	50
AGTAAGTGGCCATGTT	ref_964_fdr	8	4	9	17	9	14	8	9	14	5
TAATGCGCTGCACTCA	ref_964_fdr	72	83	108	98	49	83	68	65	80	74
TCCACGGACGCAGAAT	ref_964_fdr	11	10	17	26	10	25	19	17	8	10
TATTTTTTTCCTTATT	ref_964_fdr	246	151	328	246	160	239	158	226	165	208
CGCCACCTACGAGCAG	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGTGGGTCTGCTG	ref_964_fdr	10	5	15	9	7	10	8	4	12	5
TTTTTACCGAGTGCGG	ref_964_fdr	46	56	63	63	62	52	47	44	53	46
CTATGGAACTTTCGCG	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
TTTCATCACTAGCATT	alt_964_fdr	0	0	0	0	0	0	0	0	0	0
CGATACTCGTTTTTGC	ref_964_fdr	16	9	17	12	9	8	13	12	17	9
GACCCCTCGCCTGTGT	alt_964_fdr	130	333	161	164	358	158	330	179	375	125
GGGGATTGGTGGCATT	ref_964_fdr	132	93	150	143	116	146	104	103	119	77
AAGAGCGACATGTTTG	ref_964_fdr	87	64	110	103	62	72	59	94	64	95
AGGTCTATCCTCTGGA	ref_964_fdr	18	20	18	15	26	18	13	15	24	19
GTCTCAAGGAGGCTAT	ref_964_fdr	73	49	87	70	62	63	53	46	56	63
CGCATGTGTTTTGGTT	ref_964_fdr	61	49	66	61	42	63	56	61	54	48
GCGTGCGCACCGTAAG	ref_964_fdr	44	38	44	47	49	40	41	34	48	35
CTAACTTAGTTATCCA	ref_964_fdr	114	104	149	122	110	109	114	120	108	86
GTGATCTGTTGCCTAG	ref_964_fdr	35	28	46	38	30	23	31	33	24	29
AGTCAAGCATTCACGT	ref_964_fdr	125	121	164	147	128	102	119	129	138	130
TACATCAGCTTGGTCC	ref_964_fdr	33	36	34	32	34	24	37	46	33	35
TCTTTTAAGTGCTAGA	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCTTCATTATGGT	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGGAGGTTATATC	ref_964_fdr	49	70	58	59	51	48	45	33	43	51
CGAGCTTGGACTTGGT	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTTTCCAGTATTG	ref_964_fdr	27	26	43	34	32	27	34	39	41	27
TTGTCGCGTCTTCCCT	ref_964_fdr	99	61	113	104	69	83	57	85	72	95
GTGATTAGGTTTTAAC	ref_964_fdr	96	101	137	115	110	99	111	102	103	102
ATTAGAGTATGGATAG	ref_964_fdr	90	91	143	114	105	99	97	88	78	78
ATGTAATTAACGTGTG	ref_964_fdr	0	0	0	0	0	0	0	0	0	0
TCACTTCTTCTTCTAA	ref_964_fdr	67	53	81	85	60	48	58	59	38	57
TTTATGATATTACGTA	ref_964_fdr	52	45	81	64	49	63	64	66	49	80
AACATTGTAGGCCAGA	ref_964_fdr	25	29	46	27	34	21	30	28	30	42
CGCATGATGTTTCGCC	alt_3022_upstream	43	56	55	49	64	47	58	41	63	42
TTTGTTAGCTCCACTG	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTATTCTACATTC	alt_3022_upstream	25	36	45	32	20	16	36	21	33	28
CTTCCTTTTCTTCCCC	alt_3022_upstream	101	71	94	82	59	67	81	63	90	70
CTGAGAGGCATTGGTG	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCCGGTTCGTGTC	alt_3022_upstream	10	11	6	8	12	5	18	5	10	5
GTTTTGGATGGCCTGA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTATCGGGTCGC	alt_3022_upstream	13	11	17	12	21	10	13	12	16	23
AAATCTGTTGTCTCTC	ref_3022_upstream	246	332	353	258	309	279	313	265	364	246
TCTCAAATCACCTCAA	alt_3022_upstream	15	25	12	13	21	16	19	10	19	9
CAACCCCCGTCTTTAC	alt_3022_upstream	7	60	12	9	46	10	62	3	60	7
CTCTTGTAGCTATTCA	alt_3022_upstream	16	10	10	8	8	8	10	12	26	8
GGCTACAGTCTGTGCG	alt_3022_upstream	23	53	21	27	64	26	82	21	77	18
AGGGCTTTGGATTCTT	alt_3022_upstream	36	18	23	15	25	16	24	13	28	23
CATCCACTTTGTCACT	alt_3022_upstream	15	31	21	10	35	16	20	6	34	16
ATGATCATCTGGTACA	alt_3022_upstream	49	52	70	48	56	52	65	40	56	39
ATTGGTTCACAGTAGT	alt_3022_upstream	40	63	57	49	56	40	50	44	46	38
CGTCCGAACGTATAGG	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
GGAAAGTTGAATGTGG	alt_3022_upstream	56	77	76	70	60	58	66	46	54	43
ATTATACGCCCACTAT	alt_3022_upstream	118	119	140	112	163	81	135	95	142	85
TCGCTCTAGTTTCTTG	ref_3022_upstream	41	62	44	43	69	29	63	18	64	29
TCTTGCGTGTGGACCT	alt_3022_upstream	78	109	77	89	115	84	101	67	102	72
CAATGTGATCAATTCT	alt_3022_upstream	12	15	7	3	16	4	15	9	11	5
TTAGGACTTAAGTGGT	alt_3022_upstream	6	7	7	3	8	4	12	6	15	2
GCTGTAACCCGTGTCC	alt_3022_upstream	107	150	132	125	146	97	166	113	178	109
CCGGCACGTCCTTCGA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGGCCCAACGTCA	ref_3022_upstream	8	18	21	14	33	15	15	10	29	15
GCCTATTTTATATTTC	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAGTAAGTTAGTC	alt_3022_upstream	28	23	18	19	22	28	22	10	24	13
GCCATATGCTACAGGG	alt_3022_upstream	34	57	46	43	57	34	51	42	66	39
GTCTCTTCGTTTGGAT	ref_3022_upstream	322	327	359	306	337	290	406	304	379	293
GTAATCCGGTCGCGAG	alt_3022_upstream	8	20	14	11	17	16	11	7	9	9
ACTCATGTTATGGGGG	alt_3022_upstream	16	20	18	15	22	13	29	10	26	17
GTCATCCATTGCATGT	alt_3022_upstream	73	80	78	66	86	61	81	53	96	52
AACTCCTTTGGTCGCG	alt_3022_upstream	132	131	162	135	142	132	154	141	170	127
GCAATTATGTAAAATA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCCGTGAGGTCTA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGTCATTCCTCGC	alt_3022_upstream	49	75	63	52	66	50	69	59	48	57
TAGTGCTTAGCCATTG	ref_3022_upstream	56	88	94	70	106	72	94	62	88	63
TTCAGGATTCCGGGCT	alt_3022_upstream	5	3	5	3	6	2	4	1	4	2
ATCGGACGATGGCGTT	alt_3022_upstream	0	0	0	0	2	3	0	0	1	2
CGAATCGGTGTTTAAT	alt_3022_upstream	122	141	158	133	153	128	154	124	190	107
AGGCACAGCTTCAGGA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGTATTCAGGGAG	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGTCAATGACTCG	alt_3022_upstream	12	10	17	18	13	10	15	13	11	13
GGGATATAACTGCCCA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGTAAGTTTCTA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTCGGCACGTGAT	alt_3022_upstream	62	80	70	61	123	72	81	71	91	63
TCCAGGTGACCTACAT	alt_3022_upstream	56	108	71	96	116	81	120	75	128	58
GCAGTTGGGCGGCGCC	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGTACCGTCGCTG	alt_3022_upstream	12	20	12	10	31	16	19	10	20	10
AAGGTCTACACAACTT	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
CATTGAGCAACCCTCC	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
GCCTATCATTTCGACG	alt_3022_upstream	0	5	5	3	4	1	5	1	4	3
ATTTTATGCTGCCAAT	alt_3022_upstream	18	11	18	14	12	26	17	14	19	9
TTACTCTCATACTCGA	alt_3022_upstream	13	21	14	14	17	12	18	16	17	10
TTTTCATTACTCGAGC	alt_3022_upstream	28	27	34	30	42	25	29	22	47	21
ATCTGCGTTCTAATCT	alt_3022_upstream	60	68	61	66	61	57	87	35	78	41
ATGGTAGCGTTCGGAG	alt_3022_upstream	99	88	106	91	101	80	115	80	106	75
CTATAGGTATAAAAGC	ref_3022_upstream	65	96	95	68	81	65	104	84	109	57
AGTCTCGTTCGTATCT	ref_3022_upstream	74	68	67	50	75	64	63	67	55	50
AGATATAATTGTCGGC	alt_3022_upstream	8	6	11	7	13	9	4	10	9	5
GGCTCTCCGTGGTCTC	alt_3022_upstream	86	101	95	62	91	81	109	62	114	66
TTACGTGAAATCAATG	alt_3022_upstream	35	48	53	46	53	34	58	37	59	43
CTGGGTTCGATTTCAA	alt_3022_upstream	22	8	18	22	14	10	13	11	21	9
AAGACTATATCTCTAG	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTGACAGTTTATG	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
CTGCACATTTTTGCTT	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCTAGCGGATCTT	alt_3022_upstream	35	50	41	27	29	25	48	38	51	27
CCCTCTGATCTTTTCG	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
GCAAGGCCTAAAGTTT	ref_3022_upstream	45	25	34	35	15	21	40	11	30	22
TCATGATCGTGCCACT	alt_3022_upstream	1	1	0	4	2	1	0	4	0	2
AGTGATTGAAATGCGG	alt_3022_upstream	11	17	16	14	26	8	19	15	16	8
AGTGTTATTATATAGG	alt_3022_upstream	1	2	2	2	1	0	0	3	6	1
GGCACGACTCGCCAAA	alt_3022_upstream	35	53	55	54	55	52	70	45	44	39
TCTTGTTTAAACCAGG	alt_3022_upstream	7	15	17	11	13	19	24	11	21	9
GCAATGGTTGATCGAC	alt_3022_upstream	37	53	54	46	42	44	67	52	49	35
CTGTTGTTTACCAGAG	alt_3022_upstream	2	4	0	0	3	0	1	0	2	0
TTTGAAGTTATCCCTA	alt_3022_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTCTTAGGGATCC	alt_3022_upstream	22	13	19	10	17	14	12	13	21	18
AGTCCCCACGGAACAA	alt_3022_upstream	82	98	83	64	79	86	98	76	113	77
CTTGTCGTAGCAGGTT	alt_3022_upstream	51	61	54	49	38	53	36	50	50	48
GTGCAATGACCCAACT	alt_3022_upstream	12	3	8	8	11	7	6	3	11	5
TGCCCGCTACTCTTAG	alt_3022_upstream	12	34	16	18	42	8	35	13	27	16
GCGCCTTAATTATGTT	alt_5733_new	91	123	106	75	118	93	115	68	121	82
AGATTATGTCGAACGA	alt_5733_new	0	0	0	0	0	0	0	0	0	0
AGGGAACGAGCCAGCG	alt_5733_new	64	77	74	51	58	55	83	52	71	53
TTGCGTTATCGCCGAT	alt_5733_new	5	6	10	10	7	8	10	5	13	7
TATGCGGTCTCGTGAT	alt_5733_new	19	34	31	23	40	28	36	36	28	23
TATCTATTGATTATCT	alt_5733_new	54	101	80	64	97	64	112	70	89	63
GTACCCCGGCCCCCTC	alt_5733_new	0	0	0	0	0	0	0	0	0	0
ATGGGCTAGCTAGGTG	alt_5733_new	23	42	36	24	44	27	43	19	34	30
CTTGATTACAACCTCT	alt_5733_new	28	38	23	25	16	31	14	30	24	21
CGGGATCGCACTGCTT	alt_5733_new	36	37	52	35	48	38	46	44	63	40
GCAAGGCAATCTATCC	alt_5733_new	3	24	16	20	17	23	20	11	12	11
CGGGGCTCGTGCTTGA	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TGGAATGTGGTTACGG	alt_5733_new	27	40	28	18	19	29	39	30	40	27
GGGCGGATGATCATAC	alt_5733_new	26	35	24	17	52	30	38	25	45	28
TGCAGGCTTCAGATAC	alt_5733_new	14	14	21	13	16	20	10	11	24	4
GTGGATATGTAAGATA	alt_5733_new	11	12	15	6	18	10	17	9	15	12
GGTCAACCGACCTAAA	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CGTGGATATTTTATAG	alt_5733_new	138	171	129	99	148	105	142	104	164	116
TTGAATAGTTGGCTTT	alt_5733_new	3	1	4	6	6	1	3	0	5	0
TACGATAGAGATTCAA	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TTTAATGGATACGATT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TGGATTTCTCTGTATG	alt_5733_new	10	18	20	19	17	17	33	12	27	17
GGTCCCGGATTTATAC	alt_5733_new	89	104	93	84	122	103	112	74	120	80
TGTACGCACCGACCGT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
GGGCGCAGCTGTAGCT	alt_5733_new	9	8	4	3	7	3	10	3	8	10
AGTAATCGGGTTGATG	alt_5733_new	15	17	18	26	20	16	22	11	24	14
GTTGTCCACGCTCTTC	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TTTCTCATGTTCTTGG	alt_5733_new	51	49	54	42	51	53	45	62	56	35
GATGACTTTTAATTAG	alt_5733_new	34	29	25	22	31	26	44	29	37	19
GCTGCTGCGACGGCGC	alt_5733_new	0	0	0	0	0	0	0	0	0	0
GGGTCTCCGGCCGTAT	alt_5733_new	81	111	121	92	105	91	123	99	122	91
CCCGATAAACGCTGAC	alt_5733_new	23	29	18	22	25	17	28	19	32	13
AATTGGTTACCCACGT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
ATATTTGCTCACTTTT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
GGGACAAATCGTGCCA	alt_5733_new	7	7	9	5	10	6	12	3	9	13
CTAACATGCTTTGACC	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CTATAACTTACCCACT	alt_5733_new	17	55	21	17	55	19	68	9	42	14
GGTTATCCTGTGCTCT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
GGTTTCGAACGCACTT	alt_5733_new	43	55	49	51	63	51	72	54	73	43
GCGTGGGGCGAACTAT	alt_5733_new	35	56	31	37	44	43	35	21	60	32
ATCCGATCTGTCAATA	alt_5733_new	12	18	9	15	22	23	19	12	28	11
ATCTCCGCGAACGTGT	alt_5733_new	4	8	1	2	3	0	5	1	5	0
CGCTCTGTAGGCTTTC	alt_5733_new	61	90	64	57	94	81	103	45	98	47
ATCTGATAGAGAGGTT	alt_5733_new	18	23	11	8	15	15	18	8	23	12
TTAGTTCTTATTAGAC	alt_5733_new	23	51	23	17	41	15	37	23	38	19
TGTTAACGTGCGGTCC	alt_5733_new	10	11	13	8	15	10	14	9	13	6
GGGAGCCCTGTTTCGG	alt_5733_new	4	2	5	3	5	2	4	2	9	3
GAGTAGCGCACTTCCG	alt_5733_new	15	30	33	28	34	22	32	20	31	23
TGTCGTCAATTGGGGT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CCATGGTTTATTTATT	alt_5733_new	53	103	81	59	86	63	108	69	116	48
TCCCTATTATTGTTTT	alt_5733_new	13	26	23	23	18	5	32	17	15	17
CAGCTAGTGCGCCCCG	alt_5733_new	14	39	11	12	36	5	39	12	42	9
CGGGCGAGGTCCATAC	alt_5733_new	18	32	32	23	30	27	36	21	32	27
CCTGTGCCGGTTTTTT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
GAAGTATCTTGTAGTT	alt_5733_new	6	6	14	7	20	5	8	5	18	10
TTGGAGCAGATTCTCT	alt_5733_new	60	95	60	76	67	53	80	58	78	54
CACTAAAGGGTTAGGG	alt_5733_new	1	4	0	2	3	1	8	0	7	0
GCGTATGGCATGCTTA	alt_5733_new	13	12	23	16	15	13	19	12	24	12
CAGACTTTAGCTAAGG	alt_5733_new	33	65	47	39	54	30	64	31	64	23
CGTGGGTTTGGGGGTT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TGGATCGCTTCCCTGC	alt_5733_new	15	18	18	15	27	16	25	17	21	12
CCTACAATCCTGCTGC	alt_5733_new	40	47	47	53	43	42	58	36	55	48
GCAGCTCATGGGTCCG	alt_5733_new	24	23	35	30	42	10	45	11	39	18
AAAGCCGTACAAGTTA	alt_5733_new	125	146	168	107	153	124	152	97	126	95
TGTTGACCATTGTTGG	alt_5733_new	9	13	18	9	18	8	18	10	16	15
ATCTGCTGTCGTGCGT	alt_5733_new	32	44	30	30	59	24	50	39	53	27
CCCTCGATGTACCTGT	alt_5733_new	23	54	29	24	45	17	23	20	38	27
GAGTGTTAGCGGTTGC	alt_5733_new	42	84	58	41	64	53	55	48	76	36
GCAACCACGAGACTCT	alt_5733_new	22	29	26	16	27	25	20	25	39	19
TACGGTTGATGGGTAT	alt_5733_new	18	29	24	25	30	15	23	26	18	14
GTACCTCTATTCCAAT	alt_5733_new	40	79	51	28	76	47	77	46	71	34
CGAAAATTTCGATTAT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TTGCATTCTCCACATG	alt_5733_new	11	11	16	6	14	10	6	11	16	5
GAAGGCGCATTGCTAA	alt_5733_new	34	42	44	39	42	36	40	20	37	25
CAAAATTGTTCGTTTA	alt_5733_new	14	22	24	22	26	16	32	15	19	19
GTGTCAATGTAGATTA	alt_5733_new	133	189	144	136	194	129	193	120	211	124
ACTTCCGCTAGACCTC	alt_5733_new	0	0	0	0	0	0	0	0	0	0
AAGTACGTATTTCGAA	alt_5733_new	51	44	60	50	61	36	57	44	65	40
TTGAGTTCCTGCTGAG	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CATGATAAACTCTACT	alt_5733_new	43	47	60	61	61	49	59	41	54	30
ACACAGATATTAGTTT	alt_5733_new	29	47	47	45	63	39	63	38	55	33
GAAGCCGTTGTCTTTT	alt_5733_new	43	66	57	52	53	53	67	57	67	49
GCACAAATCTCGTTCA	alt_5733_new	45	65	73	45	76	38	70	60	79	37
TTGTAAACACATCTTG	alt_5733_new	39	42	36	33	29	26	41	29	27	32
GTAGTCCATCCTGCCC	alt_5733_new	19	46	29	27	52	21	47	15	36	18
CCCTCGTGTACACTCT	alt_5733_new	15	45	10	14	43	14	55	13	54	16
ATCAGCCTAAGCTACC	alt_5733_new	17	34	21	23	36	23	29	22	37	13
CTGCCTATGGTATTTG	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CTAAATCTAGGCGTGC	alt_5733_new	7	9	5	7	8	8	11	6	10	4
TACCACGGTTTTAACT	alt_5733_new	3	11	10	4	18	6	10	9	21	10
GCAGGGACTCCCCGTC	alt_5733_new	0	41	5	3	37	3	39	5	40	2
CCATCGTCCAGGCCCC	ref_5733_new	69	134	102	71	124	84	134	69	123	85
CTCTTCTTCTTTCTTT	alt_5733_new	127	148	132	114	175	121	172	116	183	104
TCCAGTAAGCAGGCTT	alt_5733_new	29	37	24	39	36	29	45	20	27	26
CGAGGATAGTTCGTTT	alt_5733_new	113	174	159	124	162	130	203	119	191	124
GACGGAACGACATCCA	alt_5733_new	24	25	30	25	34	31	30	26	29	23
CACTGTACAGAGTCGC	alt_5733_new	14	12	13	14	17	14	10	11	26	13
CCTTTAGGTGGCATGC	alt_5733_new	113	168	172	123	202	103	186	105	212	101
TGCCTCCTTACTTTTT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
GAGACGGTCACGTACC	alt_5733_new	0	0	1	0	2	1	0	1	1	1
GCCTTACGGCGCTTAA	alt_5733_new	22	33	28	17	33	23	35	18	25	24
CTCCCCACGGCGTTTT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CTCGAAGGAGAAGGGC	ref_5733_new	44	63	39	51	61	52	61	42	76	46
GTAACTTAAACGGAGG	alt_5733_new	7	10	10	15	15	13	20	4	12	7
GCCGTTACGAAACATT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TGTGTCGGCGTCTTGG	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TCGCCGTAAGTCTGCT	alt_5733_new	1	2	3	2	3	0	2	0	3	1
ATTTCCGACATTCCAT	alt_5733_new	86	82	132	87	94	89	118	85	121	78
GCCGTTTCACGCTGAG	alt_5733_new	35	50	33	45	51	34	65	33	56	36
ACCGGTATGGGACCTC	alt_5733_new	0	0	0	0	0	0	0	0	0	0
ATTGGCCCGATGCACC	alt_5733_new	51	56	57	47	70	54	54	52	64	37
AAATTGCATAGGTTAT	alt_5733_new	63	78	70	68	56	56	68	43	99	52
GCGACTCGCAATATCG	alt_5733_new	114	126	128	112	140	85	137	81	137	78
TAAAATTAATGAGTTT	alt_5733_new	3	6	7	7	10	3	8	8	14	12
AAACTATCTTCCTACA	alt_5733_new	38	32	41	35	53	33	57	26	55	24
TGGCTATCTGTGGGCC	alt_5733_new	65	95	70	52	136	69	155	61	152	47
ATTAACAGGGGGTACT	alt_5733_new	32	36	67	34	55	38	39	45	46	36
GTGTTGCTCTGCCCCC	alt_5733_new	4	10	11	10	7	4	7	11	13	6
GATTCCCACGTACTAC	alt_5733_new	1	9	3	5	1	1	8	4	4	2
TTGAAGATGGTCCTTT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CACCCCACATTGTTCT	alt_5733_new	39	66	77	72	94	37	70	49	77	34
ATTGGCGAGCCTTCGC	alt_5733_new	181	216	212	173	220	185	225	172	256	172
CTCACTCAGCCCCCTT	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CCCATGGCCAAAAAGG	alt_5733_new	21	14	10	9	22	16	12	8	14	5
CCTATTGGTTTTGTGT	alt_5733_new	11	2	6	9	4	9	2	9	3	14
GCTGTGGTTTGAGCTG	alt_5733_new	0	0	0	0	0	0	0	0	0	0
CTGGATGGGTGTATCA	alt_5733_new	59	87	71	67	102	61	72	63	81	64
TAAGTGGCGCCCTATT	alt_5733_new	62	66	70	63	77	66	72	45	61	48
CTACCTCGAATACACT	alt_5733_new	4	7	10	4	6	6	15	4	4	5
ACGAGTATAATCATTG	alt_5733_new	17	20	19	15	20	19	23	19	28	17
TTATCAAAACTACATA	alt_5733_new	8	17	25	13	14	8	15	8	9	13
TATGGTTTTTCTCAAT	alt_5733_new	32	27	29	44	39	26	35	13	33	15
AGTCCTAGCACTTAAA	alt_5733_new	65	93	82	92	100	60	112	61	100	59
CCCGATGTTCCAGAAG	alt_5733_new	7	18	11	11	13	4	19	10	12	9
GGTCCTTACCACGCGC	alt_5733_new	13	23	23	15	28	9	18	8	27	13
ATCGCGATTCTAAGAC	alt_5733_new	8	10	9	12	14	16	12	7	8	11
CAAAGCCATAAGTTCA	alt_5733_new	38	59	40	28	45	32	76	39	59	38
ACTCTCGGCGAGTGGG	alt_5733_new	49	74	68	60	74	54	60	51	77	57
TACCCTCGGGCTTAAG	alt_5733_new	71	71	62	64	103	75	108	55	85	60
ATGATTTGCTTTGATA	alt_5733_new	25	40	29	28	31	23	45	21	37	16
GTCTTTTTGTTAACGC	alt_5733_new	0	0	0	0	0	0	0	0	0	0
TTATTTATTGCGGGGA	alt_5733_new	0	0	0	0	0	0	0	0	0	0
ATTAAGTGATTAATTG	alt_5733_new	9	10	7	8	23	4	12	12	18	5
TAACTACTCGCCGAGG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CACGTGCGCCCTCGGC	alt_358_negative	10	10	7	8	6	8	13	8	14	3
AGTTCTAGAACAGTTG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CTCCGTCACGCCAGTT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
ACTCGTTCGGTCGGTA	alt_358_negative	13	22	13	10	20	14	24	17	22	13
GCTTTGCATTAACCGG	alt_358_negative	5	47	15	20	34	9	38	16	36	14
TATGAGATTATTCTAC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TCGGATTGGGGTTCGG	alt_358_negative	7	6	2	2	7	3	4	3	4	6
TTAGGTATTCTTGTTT	alt_358_negative	23	30	27	27	30	25	27	22	38	21
AACTTGTTTAACACGA	alt_358_negative	10	19	11	9	5	6	10	8	8	3
AATTGGCACGATTTAG	alt_358_negative	1	0	2	0	3	0	0	0	4	1
AACACTTGTGTGCACA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
AGAAAAGTTATTTGCA	alt_358_negative	121	238	194	135	258	112	275	128	300	107
GGGGCGTTTCACAGTA	alt_358_negative	14	23	13	16	29	17	37	20	31	14
ACGAACTGCGCCGCTA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CTTATCTTTTTTTGTT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
ATCCACCAACCCATGG	alt_358_negative	23	34	11	14	43	14	24	19	31	5
TTTATTAGCTCGCTAG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
GGTATTCTAGGCTAGA	ref_358_negative	62	71	82	43	78	58	81	46	140	39
GTCCCCTTTTCCGTTT	alt_358_negative	6	4	3	4	5	3	7	3	6	6
ACAACGATACGGGAGC	alt_358_negative	139	216	165	143	255	128	234	128	200	132
TTCGACCTTGTACTGT	alt_358_negative	17	44	34	28	40	29	50	21	30	27
CGTCAAGGGAGCCCAC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TGCCTACCATTGTTGG	alt_358_negative	63	96	51	39	97	35	101	46	112	47
ATGTAGCACGGAAACG	alt_358_negative	28	42	18	29	40	27	36	17	38	12
GCGCGCTGTTCGAAAA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CTTATCGCGGCGGACG	alt_358_negative	30	46	37	28	52	31	50	28	57	31
AATCACAGAGCATTAC	alt_358_negative	11	19	16	16	20	18	26	16	22	15
CGTTTATCTTGCCCTA	alt_358_negative	9	6	9	6	7	6	7	5	4	3
GTCTCGACCAATCCTG	alt_358_negative	2	8	3	3	20	3	14	0	23	2
TGTTCGGCTTCACGTT	alt_358_negative	37	91	55	47	93	46	78	40	82	44
AGCCCCTTTGTCCAGG	alt_358_negative	33	77	62	49	81	46	99	53	77	44
TGCTCTGACTGTAGGT	alt_358_negative	34	61	56	35	71	40	85	30	67	43
AGTGATACCTGGTAGC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CATCAATTCGCACTAA	alt_358_negative	48	81	37	30	65	37	74	42	77	37
AATAAAGTCTAGGTAA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
AGCTACTGTAACTGAT	alt_358_negative	11	37	10	10	30	16	38	12	24	21
ACGTGCTACCGCTCAC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
AATTCGCATCCACGAC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CCAATCTGTGTCTTTG	alt_358_negative	68	92	59	56	89	31	90	58	106	52
TATGTGGGAATTTTAT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CAGTGCACCGCCAGGC	alt_358_negative	68	130	79	81	146	68	148	67	160	68
TTGCACAACTTCTTAA	alt_358_negative	245	406	294	241	410	211	437	250	423	171
GAAACAGGCGCTGAGT	alt_358_negative	49	93	74	54	88	75	96	37	109	47
ATGTGAGCTAGCCTTT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
ATGCACAACTTCTTAA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
GGCTCCGTTTACCCTG	alt_358_negative	53	65	56	51	99	46	78	49	97	42
TTCACCTTGCCTCTCG	ref_358_negative	99	167	145	104	180	73	209	91	151	114
AGTCGGGACCGAGTTA	alt_358_negative	7	21	15	9	23	5	14	8	29	9
TGGAAATCTAAGTGTG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TTTTACTGTGTGTCGG	alt_358_negative	32	70	38	42	72	42	66	22	65	41
TTTATGGTCACCCATA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TTGGTCTACCGTATTA	alt_358_negative	6	19	11	8	21	12	13	7	25	3
TGATGCTGGGTTGGGA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CCGGTGCATTAGTTAG	alt_358_negative	2	5	2	5	6	1	4	0	9	2
ACAGCATTAATCCTGA	alt_358_negative	31	72	40	37	61	34	61	38	73	39
GATTGCTACTACGCGA	alt_358_negative	16	21	26	23	31	31	31	11	29	14
TTAGCTACGAGCTCAT	alt_358_negative	17	29	19	13	21	9	34	18	35	13
CATTTATGATTTCTAA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
GCCTTTGGTCGTGGGC	alt_358_negative	17	25	18	28	33	12	37	14	43	12
CTTTCCGGCGGAGTGG	alt_358_negative	91	240	99	81	235	64	222	85	235	83
CACACGTCTTTTGTCC	alt_358_negative	27	40	38	18	50	21	54	25	52	15
TGTGGTGCGAACCTCG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CATCTATATCGCTTTC	alt_358_negative	4	18	5	2	10	3	3	3	10	6
CGAACGTTCCAAAGGC	alt_358_negative	13	39	12	16	35	7	40	13	38	18
TCATGGTTTACCTGTA	alt_358_negative	25	73	18	10	101	15	103	14	96	19
GGCTCCTTGGTAAAAT	alt_358_negative	12	35	20	19	32	20	26	14	37	22
CTCCCGTAACGTGTCC	alt_358_negative	42	90	36	37	83	27	92	27	107	32
TACAGAAGTATGGCTT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
AGTGGGGGATGTTCTT	alt_358_negative	13	9	12	5	15	6	10	5	12	4
ACTTGGTTAAACTAGC	alt_358_negative	5	13	6	14	15	2	12	5	13	3
GTATCCAATAGACAAG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
ATTTACCTTTGGTTCA	alt_358_negative	2	2	1	1	9	3	5	2	6	0
CTACTCATGCTGGGCT	alt_358_negative	22	32	15	14	22	14	20	16	20	12
GGGGGAGTAATCCTCC	alt_358_negative	31	35	33	19	43	21	27	32	39	22
CAGTGTCCAATCTTAT	alt_358_negative	26	51	24	31	65	28	60	26	65	23
ACGCAGGAGTCATGTA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CCAGGTCTGAGTAGGG	alt_358_negative	1	10	1	1	7	1	7	0	13	0
GGCCTAATTTATTTCC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
AGATTACGGAAGCGCA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
ACAATATATGACGAGC	alt_358_negative	33	45	27	26	39	17	54	18	41	24
AGGTGGATGAGTCAAG	alt_358_negative	11	28	14	11	15	6	12	5	14	14
TCGTCACGAGTCTCAC	alt_358_negative	49	46	50	51	54	28	54	41	55	38
TTGAGCCGACTGTGTT	alt_358_negative	25	60	41	30	59	43	59	24	77	21
GTGTTTAGATGTACTT	alt_358_negative	11	28	13	10	33	14	39	12	27	12
GAGCATAACCTCCGAG	alt_358_negative	20	42	37	24	55	28	55	33	52	28
CGAACAATTGAGTGCA	alt_358_negative	75	151	102	82	184	79	166	55	194	84
CCTAGTTATTCCGGCG	ref_358_negative	1	8	5	0	10	2	9	10	11	5
GGCTTCAGGTTCTCGC	alt_358_negative	30	53	35	24	40	33	46	21	41	20
TTAGATCTCTACCTGT	alt_358_negative	9	27	17	19	27	14	29	8	21	8
TTTACAGCTGTGTCTG	alt_358_negative	3	7	8	3	9	2	4	2	6	3
GCACACATTTCACGAT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
GTGTTAGCCTGCTGAA	alt_358_negative	18	29	15	27	28	19	29	9	29	9
GCGGCGTATTTGTGAA	alt_358_negative	31	31	23	20	37	15	34	12	29	15
TAAGGAAGGATCAATT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
ACTAAGGACCAGTGTA	alt_358_negative	24	31	32	33	51	20	38	19	45	29
TCTCCTAGTTGGAACG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TTCATGCGTATACCAA	alt_358_negative	18	25	19	20	35	9	21	12	39	11
GCCCGAAAGCTTTCTT	alt_358_negative	22	31	22	28	28	29	36	17	29	25
AGTCAGCTTTGCTCTG	ref_358_negative	10	29	15	15	29	14	39	12	25	14
ACTCTCTCAGGCTCCC	alt_358_negative	15	29	22	24	36	13	30	13	37	16
CTATACTCTCTGCGGC	alt_358_negative	2	5	8	2	2	5	5	3	8	2
CTTAAAATTCTGGCCT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TTTTGTGGGTGGAGCA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
AAGGTATCGTTCTCGC	alt_358_negative	20	52	21	26	29	28	32	32	54	34
TACACCGCGCACCCCA	alt_358_negative	1	0	5	6	6	1	6	5	2	2
ATTCTCCGCATGTATC	alt_358_negative	27	35	24	36	42	38	47	22	59	22
TATTGCCGTATATGGT	alt_358_negative	32	77	53	46	63	42	74	31	66	35
TTTTTGTTCGGATATG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TTCCCGAACCCAATCG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CTCCGGCCTTGTTGCA	alt_358_negative	7	10	9	7	11	9	15	1	14	8
CGGGCATTTTTCGGGT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TACCGCTCTGGTTTAG	alt_358_negative	96	159	95	97	166	68	171	65	175	91
CTCCGAGATTCGCCCC	alt_358_negative	62	88	74	45	86	57	110	58	87	39
AGAAATGGTCGCATGC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TGGTCTTTCCTAGAGT	alt_358_negative	32	45	36	33	31	24	59	29	57	20
AATGGGCAGTACGTAC	alt_358_negative	1	0	4	0	3	2	3	1	4	1
CTTAGAACGGTTGCGT	alt_358_negative	16	27	26	14	30	12	28	17	37	12
CGAAGACCTGTGATAG	alt_358_negative	11	34	17	15	37	16	39	18	42	12
ACCTACATCGTCCTCT	alt_358_negative	18	27	6	7	15	6	23	10	21	7
TGGAGCGATGGTATGG	alt_358_negative	33	43	47	23	44	33	48	26	70	25
GAGACTGTTATTGTTA	alt_358_negative	43	54	35	17	42	28	66	30	65	35
CAGTTATCGTGCTCCA	alt_358_negative	34	53	37	28	54	33	66	25	57	20
GATCGCGAGTCTTAAA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
AGCTTTTTATAGGTTT	alt_358_negative	29	62	38	40	52	33	57	26	54	23
CTTACCGTACTCCGTT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
ATTACTCCCATGCCCC	alt_358_negative	11	35	8	13	35	16	49	18	37	12
ATATAACCCGGTCCGG	alt_358_negative	25	29	19	20	36	13	38	14	29	23
GTCCAGGTGCTTTCCT	alt_358_negative	5	13	10	4	9	2	6	2	6	5
AATATGGGCAAACTAC	alt_358_negative	28	46	39	17	46	30	52	12	39	19
CAGTGCACTGCAAACC	alt_358_negative	3	8	3	1	12	5	9	6	11	2
GTGTGGGCTTAAGGCA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CGTTCTCGGGATGCGC	alt_358_negative	34	56	32	47	56	20	66	37	81	33
TCGTCCTTCATCTGCG	alt_358_negative	7	16	15	12	19	13	17	9	23	15
CATGTATCAGTAGCGT	alt_358_negative	39	74	60	47	91	44	74	49	95	52
CTTGGCAATCTGAGAT	alt_358_negative	21	25	14	17	26	3	24	12	22	16
TTCTACCAACTTGGAG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
GATTATCGTATCAGCC	alt_358_negative	19	39	33	22	42	33	50	28	40	19
GCTAGGACATCTATAG	alt_358_negative	102	147	122	105	129	91	141	77	151	87
CTTAAGGCGATCTGCT	alt_358_negative	26	50	42	34	75	34	72	33	71	37
ATTCTGTAAAGGATTA	alt_358_negative	9	8	9	11	14	9	13	7	21	6
CCTCCTAATTAGTCCA	alt_358_negative	10	20	13	12	30	15	32	12	35	9
CCTAGATATCCTTATT	alt_358_negative	6	14	17	9	20	4	17	8	19	7
AGTAAAACGGGACACA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CCAAAAGTAGATGTGT	alt_358_negative	27	58	35	32	56	33	62	29	65	36
ATGACTGAGCGGTTCC	alt_358_negative	59	90	71	41	109	63	116	46	115	48
ATGTTGATGGATCATT	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TCCCGGCATGGGTTGG	alt_358_negative	9	9	2	9	14	7	9	11	9	4
ATTTCACCTTTCAATC	alt_358_negative	9	31	25	16	30	10	19	15	32	12
ACCACATTTACGTTCC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
CCTAGTGTTGTTTTCT	alt_358_negative	52	77	59	46	95	46	93	59	98	58
AGCGAAATTTTAGTCG	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TCCGCCTGCGGTAAAT	alt_358_negative	5	3	5	0	4	1	4	3	5	1
GTCATCCTAGGTACAG	alt_358_negative	36	67	30	40	57	31	47	48	78	29
GTTAATTCGTCATCGG	alt_358_negative	9	15	7	7	13	8	16	5	8	5
ACTACGGTATCTTCGA	alt_358_negative	40	67	38	31	66	45	62	43	62	43
GTATCTACAAATCTTC	alt_358_negative	46	42	52	44	68	50	67	35	76	35
TAGATCGAAATCGTCC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
GTCCTTTTCCTCGTTT	alt_358_negative	16	21	13	24	20	19	28	28	26	23
GGTGTTAGAAGTCTGA	alt_358_negative	0	0	0	0	0	0	0	0	0	0
TCCATCGCATCACCTT	alt_358_negative	21	31	27	26	22	31	35	22	43	12
TTCTATAGCGTCTGAG	alt_358_negative	0	2	1	0	3	0	0	1	1	0
CTGCCTTCAACGGCTA	ref_358_negative	7	48	19	27	49	23	44	13	57	16
ACAAGCACACCCTCGA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
GCTGACTTCCTGTTCC	alt_358_negative	12	17	15	18	12	10	14	12	15	12
TCTAAAGTTCCCCCAC	alt_358_negative	0	1	0	0	0	0	0	0	0	0
TGCGGCTCTATGATCG	alt_358_negative	17	31	30	21	28	23	39	10	41	22
GTATAGATATAATTCG	alt_358_negative	76	101	87	80	108	79	115	71	106	47
GGATCAGCGACTTGGG	alt_358_negative	6	11	9	10	11	6	11	4	5	6
TTATGGGGCTGGAAGC	alt_358_negative	0	0	0	0	0	0	0	0	0	0
GGTGGTTTCCATGATG	alt_358_negative	0	2	0	2	1	1	0	1	0	1
TCCTGCCGCCATTTGT	alt_358_negative	16	32	12	34	32	18	31	23	33	18
TACTGCTCTTTGTCTG	alt_358_negative	2	4	2	1	9	3	5	3	9	1
TGGATAGATCTCTGCA	alt_358_negative	34	37	42	46	47	27	60	27	43	27
GAATCGCCAGACTTGT	alt_358_negative	7	9	8	9	18	12	9	8	6	7
CTCGAACTGCGCGCAA	ref_358_negative	18	50	26	17	63	13	30	20	46	17
TGATCTATTCCGTTAC	alt_358_negative	88	141	110	86	148	92	162	99	148	83
CCTCGCCCCGTGATTT	alt_358_negative	7	26	22	18	21	10	21	8	31	10
ACAGTTTTGTGTCGTC	ref_5553_upstream	38	46	55	45	31	40	42	48	38	33
AGTTAGCATGCGGATC	ref_5553_upstream	25	38	34	22	24	17	24	24	33	25
ATGTCCCCGGGTGCCT	ref_5553_upstream	4	12	5	2	5	3	5	1	7	4
ACCCGGGTGGAAGGGT	ref_5553_upstream	5	10	18	14	4	5	6	8	8	8
ATGATGACAACGGCCA	ref_5553_upstream	13	7	9	3	11	12	10	8	6	6
ACATGCTTGAGTGGTT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TACTTACTTGATGCTG	ref_5553_upstream	8	6	10	7	17	8	17	11	11	11
CCCGGGTATAGCCGAG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGAGAGTAGGTA	ref_5553_upstream	3	1	2	2	2	0	3	0	3	2
GTAAGAAAACCTTAAT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CTATTTTCGGGCATGC	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAATGCTTTTCAC	ref_5553_upstream	57	66	73	60	45	68	51	60	61	60
GTCGCGCCTGCCCCAG	ref_5553_upstream	43	50	40	21	51	39	40	33	44	30
GAACTAGGGATTGTCT	ref_5553_upstream	5	4	4	0	3	6	4	2	4	3
CTTGCTGCTCCCCCCC	ref_5553_upstream	9	14	21	10	8	18	12	9	17	15
CACTCGTCCTAGCCAT	alt_5553_upstream	14	8	9	10	14	12	18	23	15	11
CTAGTTTTCATGTGTT	alt_5553_upstream	112	114	149	132	122	107	122	118	122	131
CTACTTTCTAAGTAGA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTTATGTTTTGAA	ref_5553_upstream	10	9	9	4	6	7	3	9	4	9
GGACTACGTTGCAATA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CATGAAATCTAGACCT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTATTGTCCCCTC	ref_5553_upstream	0	0	1	1	0	0	0	0	0	0
TAAGTCAGGCTACACC	ref_5553_upstream	16	5	7	9	6	7	8	8	13	3
TCGTACGTCTCCTCAT	ref_5553_upstream	10	20	26	21	21	16	32	19	23	12
TTCTCGCTACTGTCAT	ref_5553_upstream	12	14	17	21	9	13	15	22	23	15
CTTGTGGGCGGGTGAT	ref_5553_upstream	11	14	10	8	6	9	13	9	10	8
TCCGCCGCTATACGAT	ref_5553_upstream	8	16	25	23	14	15	14	17	10	15
CACCAGCCGGTAAGGA	ref_5553_upstream	9	11	7	14	13	18	20	6	11	10
TCTTATTGCCAGCAGG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCCGCCGCTGGA	ref_5553_upstream	41	11	35	35	41	31	21	39	40	26
TAATCCGGTGGACTCG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGCAATAAGCTGTGAC	ref_5553_upstream	32	31	44	42	40	31	31	39	35	33
TTGTCTGCGTAAGTGT	ref_5553_upstream	25	26	28	28	18	29	25	12	24	20
CATGACGTATGGTTTG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
ACACGTTGCCTAAGGT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
GTTTACGTTTGGCTCC	ref_5553_upstream	23	23	18	24	24	17	25	23	31	10
GTAAGATATATCACCG	ref_5553_upstream	40	19	25	36	22	30	28	22	33	14
TCATGCTCCGGTCGGT	ref_5553_upstream	32	31	52	30	32	25	29	31	24	42
TTCAGACGGCTAACTT	ref_5553_upstream	99	100	128	109	109	91	103	89	107	90
AGCGGTACGCAGCCTG	ref_5553_upstream	19	8	21	20	24	22	20	18	27	21
AGCTACGCTACCGTTT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGGGAAAGCCATTGAT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGGTATCCGCGCG	ref_5553_upstream	60	57	99	88	68	55	81	65	57	67
AGTAATCTTGGCTTTG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
GGCACAGTCCTCGAGA	ref_5553_upstream	20	18	30	17	20	21	18	23	13	22
TAAACTCGGTCGCGGG	ref_5553_upstream	11	7	10	10	10	6	5	2	9	7
GATACTGAAGTGGAGC	ref_5553_upstream	66	63	76	50	50	43	39	44	55	53
TGTTCAGGGAATGTTG	ref_5553_upstream	4	8	12	11	17	11	8	9	11	8
AACTATTTGACAAACC	ref_5553_upstream	8	6	10	12	10	6	23	15	7	7
AGTTTTTCCTCGCATT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TAACTATTAAAGCTCT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TTGCACCTTGCCCGCC	ref_5553_upstream	85	77	89	76	77	71	92	66	83	80
CGTTTGATGTATCTTA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CGATCTATGGCCGATG	alt_5553_upstream	197	113	235	187	116	172	143	211	142	177
GTGCGCTTCAATCGTC	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TACGTTTAATTGCCTC	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CATGATATCGCCATCC	alt_5553_upstream	18	13	20	18	15	20	13	15	13	20
CGAGTGGCGCCGGAAT	ref_5553_upstream	12	8	5	8	9	10	12	5	11	6
CGGTTGGGGCGTGCTT	ref_5553_upstream	17	14	16	13	13	17	13	24	24	9
GAACATCAGATCATAA	ref_5553_upstream	123	83	167	145	88	111	108	122	94	95
GTGGCCGTGTCTTCGG	ref_5553_upstream	63	85	96	72	82	100	73	74	69	58
CTGACTCGTTTGTGAT	ref_5553_upstream	3	6	7	8	11	7	5	11	7	9
CCGACAATCCGGGTCC	ref_5553_upstream	69	52	98	60	64	61	53	52	60	53
CTTGTGTATGCGCGTA	ref_5553_upstream	34	44	53	33	47	33	57	37	47	45
GACAGTGATCTACTCT	ref_5553_upstream	139	118	143	138	103	124	117	122	129	101
GTCCTACGGTGGCGCA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTTCATGTTGTTA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
GGATGGGTGCCTCAAG	ref_5553_upstream	11	7	18	6	9	5	8	10	12	4
GTTGCGGGCAACTTCT	ref_5553_upstream	28	26	32	24	22	31	14	29	30	31
ACCGCGCCCTTCCTCG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TACCACGCTAGAAACT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
AGACTAGCAAACAACT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGCTTGGCCTATA	ref_5553_upstream	21	26	40	24	21	20	18	11	13	14
CATTAGCTTTTGGCAA	ref_5553_upstream	7	14	9	9	9	11	15	12	16	10
GTAGTCTACTTTGTTT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGTCCGTTGCAAT	ref_5553_upstream	7	13	14	8	11	8	9	9	11	6
TTGTTTGCTCTCCTGG	ref_5553_upstream	12	7	3	5	6	10	9	14	4	15
GAGCGACAACCCGGCG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTTGGATCCACAT	ref_5553_upstream	27	20	22	30	29	28	30	26	13	23
GGTTTCAGCTTCATAT	ref_5553_upstream	19	7	29	9	11	26	13	16	17	19
CCAAAAAACTTCGAGT	ref_5553_upstream	5	5	8	4	6	3	9	7	9	2
TTTTGGGGCCACTCTG	ref_5553_upstream	19	19	12	24	10	9	16	10	11	17
CGTATATGGCGCTTTG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTTTAACATTAT	ref_5553_upstream	136	112	132	142	109	121	96	132	112	128
GAAAGATTAATGATCT	ref_5553_upstream	18	8	17	8	4	13	19	15	12	12
GTCCACAGATCTATGG	ref_5553_upstream	6	4	1	2	4	6	7	1	2	2
GCTAAGAGTTTACATT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCAGGACGGTATA	ref_5553_upstream	152	128	167	131	92	116	116	104	122	112
GTCATATGCCCCCACG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTGTGTACATTTG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCTGATTTACTCGTCT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGTGATATGTTATCGT	ref_5553_upstream	62	46	86	65	50	68	53	64	76	71
AGACTCGGGTTATAGT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CGTCAAATGCCTTCCA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CTACGTTTTGATACAC	ref_5553_upstream	8	20	16	13	25	19	11	13	15	23
TCATTTACAGAGTAGA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCGCTCTCTTTTA	ref_5553_upstream	61	47	80	74	57	52	44	66	41	51
TAACTTGTTGCAGCTG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTGTACCGTAAAA	ref_5553_upstream	6	11	6	8	10	7	4	8	7	8
CTGGCCTTCCGCTTCG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CTTTATGTTGACGCAG	ref_5553_upstream	34	41	36	40	33	39	40	49	42	37
TGGGCCTATTGACTTC	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGCTAGGGGTCAA	ref_5553_upstream	37	27	42	37	29	41	30	42	35	41
GTTCACTGTTCGGTAC	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TAATGCTAGAGACCTG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCTCGTGGTAGAT	ref_5553_upstream	2	2	4	8	3	4	0	2	4	3
ATCTAAATTAAGCGAA	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAGCCTGACCATA	ref_5553_upstream	20	23	23	11	20	18	23	9	33	16
GAAGTTCTGCGTCTTT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTCAATTGTTACG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCTTAATTGAAACCGG	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGTGTTTTGCAGA	ref_5553_upstream	31	33	38	32	31	28	27	20	40	32
CGTCCTACGATCAGGT	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCCCATTTGGTTC	ref_5553_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTGTATAAGAGCC	ref_5553_upstream	20	15	26	26	15	16	18	22	18	16
GCAATTCACCCTCCAG	alt_5392_RC	17	26	18	9	15	5	26	12	31	13
GTCTTTTGGGTACGAG	alt_5392_RC	21	18	13	16	17	14	24	19	28	20
AGTTCCGTGTTCTGTT	alt_5392_RC	4	15	7	6	9	5	8	3	10	5
ACAATTTGATTGCTGG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
ATGAGTCTTCTCGCCA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
ATATAGTAATAAATGC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TCGCTATAAATACCCG	alt_5392_RC	33	57	25	47	70	21	62	28	72	18
CATCTGTTAAGTGTTA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CGTGTCTAGTTTGATA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TCTGCCAACACCAAAG	alt_5392_RC	19	31	29	21	35	31	27	11	32	16
CGGCTGTACCACTCTA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CAACACAAAAATCTAC	alt_5392_RC	59	98	88	74	111	76	109	50	115	62
GGTCGGGTACTTTTAA	alt_5392_RC	22	36	24	32	36	25	24	18	40	16
TTAAGGAGCCAATCTA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCTTACCTCGTT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CCGAGTTCAAGCTTAT	alt_5392_RC	47	113	63	59	122	61	86	54	97	38
ATACGTTTGTTAACTA	alt_5392_RC	18	18	17	14	36	26	25	14	27	13
TGTTCTCACATTTTCG	alt_5392_RC	2	2	0	1	2	4	4	2	5	3
CGCCTCTCTTCTATCG	alt_5392_RC	1	4	2	3	4	3	1	4	6	5
CAGTTGTTAAATTACA	alt_5392_RC	9	10	7	2	12	7	8	12	11	6
CGACAGCTAGTTTGTG	alt_5392_RC	4	6	5	2	6	5	6	2	6	5
TTCCTGTGTGTCGCTC	alt_5392_RC	6	24	9	18	17	5	19	7	15	10
CGATTTTGTAGTGAAT	alt_5392_RC	106	165	149	121	145	102	182	101	167	108
TGCAAGCAGTCAAGGA	alt_5392_RC	31	43	35	34	26	33	44	18	48	29
GACCAAAATTGTGGTG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TGCTTCGCTCCGATTG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TGGGCACTCAAGGACC	alt_5392_RC	35	57	59	50	82	39	72	46	70	35
CTGTGCCTCAGCATAG	alt_5392_RC	45	82	60	55	61	60	87	52	88	52
AGCGTACTCCTCTGAT	alt_5392_RC	6	18	5	4	18	8	13	5	12	5
TGACGTGCAGTCTTTA	alt_5392_RC	2	3	3	2	2	0	1	0	0	1
CCTACGGGGAGTACCG	alt_5392_RC	72	79	62	44	88	45	102	56	104	44
ACTCGTTCATTTTTGG	alt_5392_RC	13	14	15	11	35	19	22	9	20	12
ACTGGATGGGTATTAT	alt_5392_RC	24	16	30	14	35	18	25	24	35	14
GTGACGTCTATTGTCG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
AAGATTTCTTTCCTAA	alt_5392_RC	17	20	22	17	12	15	20	15	43	10
CGTGGTTCACTTTAGC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TTCGAGGCCGTCCTGG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
AAGCTGGAACTTTGAA	alt_5392_RC	16	24	21	18	28	16	34	14	32	13
GTTTCTGGCTACCTAC	alt_5392_RC	15	22	25	30	54	27	44	21	37	17
AGTCGGATCCTGCAGG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
GGTTATTTTCGATAGC	alt_5392_RC	0	7	5	4	5	5	12	5	6	3
GTCCAGCGATGGTAGT	alt_5392_RC	43	87	43	67	64	39	66	34	85	41
GTGCCCTTCTATGAGT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TGCGGTCCCGACTTCC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TCTCTACAACGAATAC	alt_5392_RC	22	54	20	27	59	20	66	32	54	22
CTTACGAAGAGACTCT	ref_5392_RC	33	48	51	26	55	40	45	25	60	35
CTTTCGTGATTACGTT	alt_5392_RC	25	48	58	28	43	32	50	30	64	35
GTTGTTCTCCCGACTT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CGTAGTAGAACATCTA	alt_5392_RC	12	18	23	16	28	14	27	14	29	12
TCGGTTGGGTATCCGA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TACCAAGTTAGCGAGT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
AGATACATAGGTATGG	alt_5392_RC	14	28	13	29	32	20	36	22	19	17
GCGTACCTAATACACT	alt_5392_RC	38	74	38	23	70	31	88	37	83	25
TAGGTGAGTTCAAATT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
GTTTTTTTACTATCTA	alt_5392_RC	13	23	19	13	28	12	26	19	32	12
ACGATGTGCCTGGTAG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTAGTATTGCCC	alt_5392_RC	56	78	51	51	75	38	72	38	82	29
GCCGATATAGTTTCGT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
ATTGCGTGACGACAGG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CTTTAAATTGACGCTT	alt_5392_RC	12	10	15	20	14	11	15	8	18	14
CTACCATCCGACATGG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CCTTCTTATATTCCCC	alt_5392_RC	7	17	18	8	20	11	33	5	12	6
CACGTGTACTTACCTT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCATATGGCGAG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TTTTAAGCTTAAGGAT	alt_5392_RC	12	24	26	16	23	15	18	20	28	14
TGTCTGTGTGCTTTTT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
AGATAAAGCACTGGTC	alt_5392_RC	22	28	23	20	19	9	27	14	31	14
TCCTTTATCGCTGCGT	alt_5392_RC	2	0	0	0	2	1	2	1	5	0
CGTGGTTCACTTTGGC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CTGTATGGTCTATGCA	alt_5392_RC	5	14	7	6	26	2	18	6	25	4
TACCGTCCCTGCTGGT	alt_5392_RC	4	9	6	0	10	2	5	5	13	0
TTCCAGGTATGCCTGT	alt_5392_RC	28	38	42	19	39	21	54	24	61	28
GATTCTACGGAGCGTT	alt_5392_RC	4	11	4	8	13	14	16	3	16	9
ATACCGGGCTGCGCTT	alt_5392_RC	9	18	10	7	14	5	23	7	13	7
TTGGTAGAGTCAGAAT	alt_5392_RC	16	27	5	12	23	14	17	13	20	16
CCGGGAATTTTTGTTC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TGTCATGCCGTTCCTT	alt_5392_RC	13	18	20	4	20	12	13	12	16	11
TTCAAAAATTACGCTC	alt_5392_RC	12	32	24	16	35	14	33	18	28	20
CTAACCGGGGCCGGAT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CTTAGTATTGGTTTGC	alt_5392_RC	13	20	22	15	14	19	29	14	28	21
CTTTCGATTTTCGTTT	alt_5392_RC	7	14	14	10	6	12	12	12	17	10
TTTTCTGCTATGAACG	alt_5392_RC	15	17	18	10	21	15	11	12	26	10
TAGCTCCCGTCTAGTC	alt_5392_RC	20	70	21	28	56	17	68	16	73	20
TTTTATGTATTGTCCA	alt_5392_RC	0	0	0	0	5	1	1	1	4	0
ACAACCAGTTCCATGA	alt_5392_RC	0	2	0	0	3	0	2	3	7	0
TCCCGGCGCATATATC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CCGCTTACCTCAAGTC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
CTGTATGTGGGTCAGC	alt_5392_RC	44	45	41	35	74	39	43	37	64	37
GTGCCTGACCAGTCAG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
AACGCTTGAGTGCTAT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TTCCTGTGGTGCGTGC	alt_5392_RC	9	25	11	9	15	7	19	6	20	7
AAGGCGGTCTTCCTAC	alt_5392_RC	7	13	25	22	18	8	33	10	19	8
CTTGGTCTTCGGCTTT	alt_5392_RC	11	15	9	12	12	11	13	14	20	3
ACCTAGCTCTTTACTA	alt_5392_RC	11	28	11	16	22	14	38	16	36	10
TGTACCATGAACACGT	alt_5392_RC	39	41	38	35	43	27	63	31	60	25
TCTGGATTAACTATTT	alt_5392_RC	17	32	23	14	30	18	41	18	31	18
AGTTTACAAATCACGA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TATAACGCGTATTAGT	alt_5392_RC	5	21	8	7	13	9	18	4	23	6
TTTCCTCCGATCAAGA	alt_5392_RC	76	122	93	93	103	88	128	91	135	81
CTCTCTAGCTGGCGCT	alt_5392_RC	32	68	33	40	71	25	82	27	69	29
CCGTGATAACATGGCA	alt_5392_RC	5	11	5	7	9	5	12	9	13	7
TGAGAAGTTGGATGGG	alt_5392_RC	9	17	8	11	8	7	5	13	12	9
CACTAAGAATCCTCGC	alt_5392_RC	4	7	2	3	5	2	1	2	9	3
ACGACTAGGTTCCCGG	alt_5392_RC	12	28	12	13	29	13	15	15	29	13
AAGGGTACCAAGACCG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
GCGCCGCGGTGCGACG	alt_5392_RC	24	34	27	34	40	15	51	15	43	21
CGGCAGCATTCCTCCT	alt_5392_RC	41	21	21	18	31	17	32	20	29	21
ATCCTTGCTTTCCCGC	alt_5392_RC	37	54	52	38	57	40	57	28	65	34
GATAGCTCGGTGTTTG	alt_5392_RC	57	96	92	61	106	47	139	50	108	57
ATCTTGGGGTCGGGCG	alt_5392_RC	7	21	11	11	21	14	18	9	27	5
TTGCGCCCGAACTTGT	alt_5392_RC	27	48	36	31	38	40	54	24	54	32
ATCGTCGCACACGAGT	alt_5392_RC	3	0	5	0	6	3	1	1	5	0
GTCAGGTTTGCCCTCT	alt_5392_RC	8	18	14	15	19	18	23	6	16	11
TAGTTTGTTTTGAGAA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TATAATTGTCGTGTAC	alt_5392_RC	3	16	7	7	13	3	11	3	12	4
TGTTGCTTAGTAGATC	alt_5392_RC	2	6	5	1	9	2	3	3	3	4
CAGCATGGTACCGTTG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TCGATCAAGCTAATCT	alt_5392_RC	23	34	33	16	44	17	45	23	31	22
TCTGCAACTTGGAGAG	alt_5392_RC	6	24	5	16	19	8	11	12	23	7
GAGTCTAAACCTTCGG	alt_5392_RC	21	41	20	19	30	17	38	16	39	12
CCGCCTTCGGTAGATT	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
GAGTAAGGGCTTAAAG	alt_5392_RC	6	8	15	14	16	9	18	13	17	9
ACCGCCGTCGTGGCAA	alt_5392_RC	13	19	20	18	19	8	26	15	28	5
TACGTTACGAGCTTTG	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TTTATATGGCCTTTAC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
GTTTATAGGTATAATA	alt_5392_RC	4	8	7	5	14	4	15	3	5	4
GCAGTTGGACAATAGC	alt_5392_RC	46	81	47	38	44	37	86	29	78	45
AAGTTCATTCGATATC	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
TTTCATATGTTTCTGA	alt_5392_RC	11	12	17	8	8	6	12	4	19	7
TTTCGCATACAATTGC	alt_5392_RC	13	12	16	12	25	14	22	11	22	8
CTCTACATAATTTCTA	alt_5392_RC	25	30	20	21	38	22	31	18	44	18
TTGATCACGTTGTCCG	alt_5392_RC	73	94	85	66	100	69	97	58	103	60
AGCGTACTTCTTTATA	alt_5392_RC	0	0	0	0	0	0	0	0	0	0
ATTAGGCGTTTTGTGG	alt_5392_RC	13	22	21	20	19	24	36	28	35	15
TTGGGCGTCTCACTAA	alt_5392_RC	93	148	133	107	179	90	174	79	213	98
GGTATCTCGATTAAGT	alt_5392_RC	6	10	8	8	19	6	10	4	17	6
AAGCCTGACTATGGAG	ref_6016_new	13	16	14	7	13	10	18	10	12	12
GACAGCGTTGTTCAAA	ref_6016_new	0	0	0	0	0	0	0	0	0	0
TGACTACTCTTTGGTT	ref_6016_new	0	0	0	0	0	0	0	0	0	0
TGCGGTGCACATCCTT	ref_6016_new	22	32	39	25	31	18	43	28	42	23
CGCTCCAGCCTACAAC	ref_6016_new	0	0	0	0	0	0	0	0	0	0
TGTTGTTCTGTGTACC	ref_6016_new	17	11	16	7	11	14	19	7	11	7
TGTAATATGGAGTGTT	ref_6016_new	80	113	84	75	94	78	135	82	119	54
CGGATCGTTCTGACAA	ref_6016_new	3	3	2	2	6	6	6	2	4	6
TCACCCTGCTTTGGCC	ref_6016_new	13	27	7	16	19	12	19	10	16	8
GTCCGGAAGCTTGTTT	ref_6016_new	0	0	0	0	0	0	0	0	0	0
CGCGCTTAACGGAGTC	ref_6016_new	62	60	63	55	69	68	74	48	80	49
CTATGGCTTCCATTGT	ref_6016_new	10	3	4	4	14	2	8	6	5	7
ACTGAGCGTACTCGAC	ref_6016_new	8	12	12	3	10	7	12	11	14	7
GACCAGTCGTCGGTAC	ref_6016_new	0	0	0	0	0	0	0	0	0	0
GATTAGTTGTGTGAGC	ref_6016_new	1	0	5	2	4	3	4	3	4	3
TCACAGACATATCAGG	ref_6016_new	0	0	0	0	0	0	0	0	0	0
TGAACTAACTTTCCAG	ref_6016_new	0	0	0	0	0	0	0	0	0	0
CGGATACAGACATTCA	ref_6016_new	4	10	5	3	4	7	11	5	12	7
TTCGACCATGCGGATA	ref_6016_new	14	26	22	11	23	6	21	14	18	8
CCAAAACTATTTTGGT	ref_6016_new	15	29	28	16	29	27	30	20	35	18
TTGATGCGGTGTACTT	ref_6016_new	22	16	18	16	14	6	18	11	12	17
GGGTGCCGTGAGCATG	ref_6016_new	2	12	12	9	6	7	6	4	9	4
TGTGCCTAGTTGTTTA	ref_6016_new	1	1	2	0	1	0	0	1	5	0
GTGTCATAATATATTG	ref_6016_new	26	42	27	22	48	19	54	29	40	20
GACCTCTCGGAAACCC	ref_6016_new	12	2	6	3	4	3	3	3	3	4
TACAGACGCGTCATGT	ref_6016_new	65	88	77	62	105	76	85	62	85	67
CAGTAAGGCACGTTAC	ref_6016_new	58	67	58	60	49	30	85	54	87	45
ACAAGGAGCAGATGGC	ref_6016_new	45	76	53	56	60	53	55	48	83	56
GATTGTTTTCTCTTGC	ref_6016_new	52	63	55	47	51	45	59	56	47	41
CGGCTCTTGATACACG	ref_6016_new	62	106	81	77	103	64	107	68	109	56
CGCTGAACCGTCATGC	ref_6016_new	9	11	10	13	5	8	12	7	8	3
CGGGTAAGAGGTCCAA	ref_6016_new	0	0	0	0	0	0	0	0	0	0
CTCGACTAGCATGCGC	ref_6016_new	11	21	19	24	23	12	23	16	27	9
TTTCATCGCCATAACT	ref_6016_new	0	0	0	0	0	0	0	0	0	0
ATATCTTGCGATTGCC	alt_6016_new	108	124	133	95	139	82	149	101	139	86
CTGTCCACCGTTAGCT	ref_6016_new	10	43	25	19	36	20	38	21	26	29
TATCACAGGAACATTC	ref_6016_new	189	28	235	229	39	224	35	181	42	169
CTGTTCAAAAACAGTC	ref_6016_new	0	0	0	0	0	0	0	0	0	0
CGTCAACCTGCCGAGC	ref_6016_new	6	4	10	8	15	1	10	1	5	4
TTAGCAAGTCCCTTTA	ref_6016_new	16	21	26	18	15	10	28	9	23	17
ATGGGCACTAGGATTA	ref_6016_new	4	5	6	0	2	2	1	1	2	0
TCCCTCCTTCTCGTTC	ref_6016_new	0	0	0	0	0	0	0	0	0	0
GAGCGGAGAGTCAGGG	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TACGGGACTTTTGATT	ref_6016_new	3	1	2	4	5	1	7	2	4	3
AACTTCATCCTATTCA	ref_6016_new	2	6	4	5	3	9	9	4	3	2
GGTTTAAGCGCTCGGT	ref_6016_new	0	0	0	0	0	0	0	0	0	0
GCGAGCTCGGTTTTGG	ref_6016_new	15	23	14	11	15	19	14	12	19	13
TATTGTTAAGCTCCGG	ref_6016_new	8	15	11	14	12	8	17	9	12	16
AACGACACATGTATGT	ref_6016_new	41	66	47	47	57	38	82	41	67	46
TAAGTGGCGAGGTGAT	ref_6016_new	8	5	3	2	10	4	12	3	4	2
TGCGAGCTAGTCACTC	alt_6016_new	53	75	68	54	66	52	85	58	81	46
ATTGTCGGGACCAATT	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TGGTTTCAGTCGCATC	ref_6016_new	18	34	29	23	38	25	25	22	24	16
AAGGTGTACAAAAAGC	ref_6016_new	0	0	0	0	0	0	0	0	0	0
GTTGAACTGGACACGT	ref_6016_new	20	17	20	21	26	19	24	14	34	28
GCGCTGTCGTCCTGCA	ref_6016_new	100	25	98	86	36	90	39	92	30	73
TATCTCAATCAGTTAT	ref_6016_new	43	47	45	54	66	36	66	45	67	38
TTTACCTTGCGCCGGA	ref_6016_new	60	72	66	63	106	52	110	76	77	60
CGTGCATATTAGCCAG	ref_6016_new	8	13	7	13	9	10	13	13	12	2
CCCACACCCCGATGCC	ref_6016_new	60	62	69	52	45	67	35	51	59	43
AATCGACCCCTGTCAG	ref_6016_new	13	23	35	24	26	22	20	18	30	16
GGCTTCAATTTCAGGC	ref_6016_new	19	15	29	15	19	20	12	16	21	5
GATTAAGGACTTCGTG	ref_6016_new	33	59	48	35	40	37	47	28	47	37
ACCTTGTAACCCTTTT	ref_6016_new	0	0	0	0	0	0	0	0	0	0
CGGCTATTTGGCGGCG	ref_6016_new	11	10	7	7	3	4	8	4	6	2
GCATGAGACCAGTTGC	ref_6016_new	4	16	13	3	8	9	14	6	12	10
CAGGTAGTAGCGCCGA	ref_6016_new	0	0	0	0	0	0	0	0	0	0
CTGTTGTGCTGACATG	ref_6016_new	0	0	0	0	0	0	0	0	0	0
TGCTCAGAAATTGCCC	ref_6016_new	0	2	6	1	0	0	1	0	3	1
GCTTCTGCTGTTGTTT	ref_6016_new	31	49	34	30	38	33	45	31	61	33
GTGCGCTACAAGTCAG	ref_6016_new	19	21	21	24	38	21	39	23	33	16
TCGCTATGATCTCAAG	ref_6016_new	0	0	0	0	0	0	0	0	0	0
ACACCATTGGGTAAGA	ref_6016_new	22	9	15	19	17	12	20	15	29	15
AATTAAAACCGGTACT	ref_6016_new	31	23	30	25	24	21	45	24	17	17
GGTCTCTTTTCTGTTG	ref_6016_new	4	9	8	2	8	3	6	6	2	4
TTACGCTCCATGTACC	ref_6016_new	21	23	28	17	26	19	31	11	26	17
TGAGCTTGAGTCGGCT	alt_6016_new	19	35	40	20	43	22	33	25	27	19
GCTTTGCTGCATTGCT	ref_6016_new	2	8	1	1	2	1	3	1	4	2
GGGGGTAATTCGTATC	ref_6016_new	13	7	13	7	9	3	18	9	9	12
GCCCGAATTCTCTAAG	ref_6016_new	28	26	32	24	27	17	25	13	30	11
CACCGCGGAGGATCGC	alt_6016_new	44	75	68	45	91	56	64	64	80	56
GACGACCGTATACTAA	ref_6016_new	0	0	0	0	0	0	0	0	0	0
GCAGCTTGGTTCCCTC	ref_6016_new	0	0	0	0	0	0	0	0	0	0
AAAGGTTACGACGCCG	ref_6016_new	24	23	47	33	30	34	26	26	23	16
ATCTCCGTTAACGTAG	ref_6016_new	7	10	16	4	12	8	12	11	17	5
CATCATGTACCACAAT	ref_6016_new	2	5	9	0	7	0	8	4	1	2
GGTCGTGCGCGGACCC	ref_6016_new	0	2	4	1	1	0	0	1	1	2
GTTGGCGTATTCTTAG	alt_6016_new	143	182	159	137	194	121	197	133	180	123
ACCCACGGTTGCGGAT	ref_6016_new	10	26	21	17	29	18	26	17	10	14
CTTCCTACGGCTTGTG	ref_6016_new	16	25	10	21	21	15	20	15	29	21
GTGGGGGATATTAACT	ref_6016_new	10	16	23	12	12	10	15	15	17	10
CCCCACCTGCTGTATA	ref_6016_new	14	17	9	9	16	11	22	10	36	13
TTCGTCGATTCAATCC	ref_6016_new	0	0	0	0	0	0	0	0	0	0
TTCGTCGATACAATCC	ref_6016_new	50	60	47	47	56	50	56	30	50	48
ATTTATATCCGGTTGT	ref_6016_new	11	34	18	12	27	6	31	8	25	9
ATTACCTTAAAGTAAG	ref_6016_new	4	13	10	5	18	3	11	4	6	3
GACGTTCTTCAGGGCC	ref_6016_new	99	120	105	112	104	91	129	88	130	80
GCGGTGCTTGAACCTT	ref_6016_new	8	13	10	6	13	7	15	5	15	3
GTGCTTTTCTATTTCC	ref_6016_new	41	46	80	59	66	58	51	58	40	43
AACTCTCAATGGATCA	ref_6016_new	0	0	0	0	0	0	0	0	0	0
TGCCGCAAGACAACGT	ref_6016_new	16	31	25	19	31	12	29	14	24	15
AAGGTTTCGACTCTCC	ref_6016_new	120	127	128	118	119	108	125	110	137	86
ATAAGAGTTTGCGCCG	ref_6016_new	8	8	16	12	10	11	19	6	22	8
GGTAATCACTCCTGGG	ref_314_reverse	153	219	151	108	253	124	242	139	170	133
TCATATAAGTTGTCAG	ref_314_reverse	29	65	37	32	53	27	70	26	59	43
GAACCAAGTGTTTTGT	ref_314_reverse	4	4	2	6	5	5	7	2	7	6
TGTCGTGCTTCCGGCA	alt_314_reverse	129	188	158	130	178	119	169	134	187	135
ATTGGACTGGCGCACA	ref_314_reverse	21	21	20	16	31	16	23	10	28	15
CCATGGAGGATACCGC	ref_314_reverse	18	36	14	16	12	16	25	16	23	17
CCCTTTTCCTTGTCAA	ref_314_reverse	42	55	44	42	43	33	52	39	67	31
GCAGGGGATCACAGTG	ref_314_reverse	9	19	6	2	14	5	17	6	14	6
TGACAACAATGGGGGC	ref_314_reverse	0	1	1	1	0	0	0	0	1	1
GTGACTCTTCCGTGCA	ref_314_reverse	5	23	12	9	28	14	20	7	16	6
TTTATTGTTGAGTCTA	ref_314_reverse	94	145	116	71	151	78	132	71	125	81
GGCCCGTAGACAAAGC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
CTCAAATGGAGGGGGG	ref_314_reverse	48	67	68	50	88	46	58	56	65	44
ACTCTGTCCCTATAAG	ref_314_reverse	52	142	66	58	153	59	144	57	155	66
CAGTATGTATCGTTCT	ref_314_reverse	9	9	16	7	12	5	5	10	16	7
CCGCTAGCCACCGGAG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTAATAGGACGGT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCAGTAACATACC	ref_314_reverse	4	28	11	9	34	6	44	9	33	4
AGAGGGTTCTATTCTT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TACTGGTGACGAGTGT	ref_314_reverse	9	29	20	12	24	12	30	17	19	14
GTTCCTTGTTTATGAT	ref_314_reverse	14	15	19	16	31	14	27	18	19	17
CAATTTGGATGGAGGT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCGCAACCCACTC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
GTGTATCAGTGAGGAC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
CAAACTTGTATACTGT	ref_314_reverse	12	17	13	21	23	13	20	12	36	16
TTTATACAGACTCGGG	ref_314_reverse	26	41	36	30	51	29	46	37	42	27
CGGCTGCTCTTTCGTG	ref_314_reverse	13	14	4	7	14	9	14	12	6	4
GGTGTTACTGGGTGGG	ref_314_reverse	13	27	13	16	18	8	34	7	29	10
GGAGGGCTAATGCGCG	ref_314_reverse	16	23	14	21	23	16	24	12	27	18
GGCACTTCGTGGAATT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
GAAGACCCATTTGTCG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCAGGTACTACAT	ref_314_reverse	32	64	46	52	58	36	43	49	66	31
TCCAGTGTTATGCGGT	ref_314_reverse	2	16	11	12	18	11	7	8	9	3
GCAGACTGGGTAAAAT	ref_314_reverse	15	26	13	17	31	15	29	18	48	27
TCATCTTCACCCGCGC	ref_314_reverse	1	9	9	8	8	9	4	8	6	6
ACACATAACGTTCGGA	ref_314_reverse	20	35	31	12	28	18	23	10	25	16
TCCCACTACTAGCTCT	ref_314_reverse	0	2	1	0	2	0	2	0	6	1
TGGCTGGCTAGGCTTA	ref_314_reverse	0	5	4	0	1	2	2	1	4	3
TAGGCCGTTGTTCCGC	ref_314_reverse	6	15	9	10	11	8	16	7	17	8
GCGAGTAGGTGGTCGT	ref_314_reverse	3	4	1	0	3	0	3	5	3	0
AGGACTATTCTCCGCT	ref_314_reverse	22	45	34	34	62	24	72	28	72	30
TAGTTCGCGCCCTTTC	ref_314_reverse	18	30	28	17	31	26	20	21	26	19
CTTTTCCTCTTTCTAC	ref_314_reverse	27	20	37	10	22	18	17	16	25	18
TGAGTGGACAAGCATT	ref_314_reverse	7	7	10	6	16	9	14	7	20	6
CCAAGGTCGTGGTTTC	ref_314_reverse	10	16	10	13	20	9	17	6	22	12
TAATAGAGGACTAAAG	ref_314_reverse	6	8	2	5	3	7	7	2	10	6
GCGCTGATTTTACGTA	ref_314_reverse	1	0	0	1	0	0	0	0	1	0
GCCATTGTCGTGTAGA	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
GGATTGCCCCTCTCAG	ref_314_reverse	25	39	26	28	39	26	29	32	51	24
GGGCTGCTCGGGCTTC	ref_314_reverse	6	13	14	9	17	10	22	17	19	9
ATATCTTTTGATACGC	ref_314_reverse	17	23	28	21	24	20	24	19	45	20
GGTACGAATCGTTCCC	ref_314_reverse	24	25	10	11	17	15	31	20	31	6
TGCAGTTAACACAGCG	ref_314_reverse	21	25	22	20	32	16	24	9	32	11
TTCGTGTTCTTCGCGG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTGAAGTATTGA	ref_314_reverse	8	21	20	16	15	10	14	13	15	13
ACACCCTATGTCGAGG	ref_314_reverse	0	0	1	0	0	0	0	0	0	0
AGATCACACCCGTAAT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TGCACGGGCTACACTT	ref_314_reverse	18	44	31	23	45	19	41	22	32	16
TAGCGTCATTATGCCA	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
CCATATGCAGATAGAA	ref_314_reverse	6	21	7	8	18	13	15	4	18	5
TTTGTTCGAATCCTTA	ref_314_reverse	15	34	23	20	30	25	26	19	36	14
AGATGGCTATTATTGG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TCACTTGCATTGCCAC	ref_314_reverse	30	50	38	26	62	46	47	38	53	30
TCCATGGCGGCGCGGC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAGTATCGCTCAA	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TATTACTAAAATTCTC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
GCCCAGCGAGCAGAAC	ref_314_reverse	4	5	5	5	8	1	14	2	10	2
GGTGCATGCAAATCAA	ref_314_reverse	8	10	6	10	19	11	11	6	18	10
TGTGATTGTACTATTT	ref_314_reverse	27	53	25	35	49	24	49	23	54	23
TTTTTGTAGTTCCAGG	ref_314_reverse	1	3	3	4	8	2	7	6	6	1
ACAACTAGCTATAAGG	ref_314_reverse	17	30	21	16	21	19	32	17	41	23
TTCTATTTACCCGTCG	alt_314_reverse	28	63	34	24	58	25	73	32	98	24
AATCTGCCAACTCCCG	ref_314_reverse	5	7	5	4	6	7	3	5	6	2
TCGATCGAGTATGCAC	ref_314_reverse	17	32	28	21	36	23	41	10	38	13
ATTGGTAATTAATAAA	ref_314_reverse	44	61	44	39	75	45	54	38	56	53
GTTAACAAATCAATCT	ref_314_reverse	13	27	14	18	18	22	28	15	18	27
CCCGACCGGTTTGGCG	ref_314_reverse	4	5	3	3	7	5	5	4	5	0
TGAATTCCAGGGTTGT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TATTTGGTGTCGTCTG	ref_314_reverse	19	33	25	12	35	8	30	30	40	17
GTGCTCCCTCATGCGG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCAATCCTAGATC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TTATAATACTATTCGT	ref_314_reverse	21	17	11	4	23	9	15	7	19	9
CACTATAGCCTTGTAA	ref_314_reverse	7	15	11	11	18	9	11	13	17	8
GTAGTATTCAGATACC	ref_314_reverse	6	13	8	12	10	5	14	6	14	7
CCCTTGTTGCCTCTTG	ref_314_reverse	17	21	22	15	20	11	20	11	24	3
TGAGATAATTCCTTAA	ref_314_reverse	11	28	20	22	26	19	20	14	24	12
CGCTGGTCCGCCTAAA	ref_314_reverse	18	29	15	13	20	17	35	20	22	15
AGTCGGGTTAAGTTGC	ref_314_reverse	17	19	11	8	11	8	21	5	13	8
CCAGTTCGTATTCAAG	ref_314_reverse	1	26	6	10	20	4	25	2	17	2
AGCTGCGCGGGAGGGT	ref_314_reverse	2	6	7	3	4	9	7	3	5	2
GAGTGATACACATCGG	ref_314_reverse	2	0	0	1	3	2	2	6	1	1
GTGCTCGGGTATCGCA	ref_314_reverse	15	7	10	10	12	10	16	8	13	10
CCCCTGGGTCGATCTG	ref_314_reverse	28	38	24	24	36	34	41	21	51	25
ACTACCGATGTCCAAT	ref_314_reverse	22	67	38	37	59	38	53	33	70	33
ATATACATTTGCTGTC	ref_314_reverse	5	20	13	5	13	12	15	9	11	7
TCTGATGGCAAATTCG	ref_314_reverse	153	254	163	163	225	134	254	143	213	122
TGCGTGGAGTGTACTG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
CATTTATTACGTTATG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TGATTATGATTATGGC	ref_314_reverse	5	12	3	6	4	3	3	4	4	4
CAGCTTAGTGCTGAGA	ref_314_reverse	5	4	5	3	8	1	7	1	6	2
GCTTTCAAATTGCCGC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TATCCCTACATGTCCC	ref_314_reverse	37	62	45	52	89	46	79	47	85	52
GAAATAACCCTCCCAT	ref_314_reverse	23	26	23	32	25	30	45	16	37	22
AGCCTGGCTGTTGAGG	ref_314_reverse	10	23	2	4	25	14	27	8	30	6
CCTTCCACATTCCAGC	ref_314_reverse	2	14	15	10	7	7	17	2	16	7
TTTCAAATTCACAGCG	ref_314_reverse	29	16	16	15	26	18	33	18	25	16
CTGGTCTGGCCTGTTC	ref_314_reverse	4	11	3	0	9	4	9	4	10	3
CACCCGTCACGTTTGC	ref_314_reverse	3	22	8	6	12	13	15	8	28	5
TGATGTAAGTTAGCGC	ref_314_reverse	12	17	17	19	30	14	27	9	24	17
TTGAGTACAGTGTCCT	ref_314_reverse	0	2	1	0	2	0	3	0	1	0
TATTTCTGGAGGTGGG	ref_314_reverse	45	56	40	29	49	38	46	44	62	30
TCCTGACTTTGCGCGA	ref_314_reverse	26	44	23	24	19	19	34	19	28	21
CGATTTCTGTCAGGAA	ref_314_reverse	16	17	32	24	24	23	19	12	17	16
AAAGCACGGCCCGAGA	ref_314_reverse	14	16	16	14	14	15	14	17	14	12
ACTACTGCAATTTTTT	ref_314_reverse	17	19	16	24	34	19	33	17	32	21
ACCGCCTTCGCTTTAA	ref_314_reverse	0	1	2	4	4	1	5	1	7	1
CTGGGCGGTTAAGGTC	ref_314_reverse	91	140	89	77	122	90	118	96	125	84
ATTTGGATCTATTCGC	ref_314_reverse	13	15	15	7	23	6	13	15	17	9
CTAACGGGTTCAACCC	ref_314_reverse	16	27	29	22	51	24	43	32	47	11
TTGCCTGTACTGCAGT	ref_314_reverse	7	12	12	8	9	10	25	5	14	5
ACCCAGTGTTATAGTC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TATTACTGGACCTGTA	ref_314_reverse	12	16	20	11	20	10	30	17	20	15
AGGGCGTAGCAACTTA	ref_314_reverse	15	21	17	15	24	12	35	15	18	11
GTGGGATCGACGGCTT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGAAGATCTCCG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTAACTGCCTTCT	ref_314_reverse	10	8	12	4	10	6	9	11	13	9
TTTTCGCTCTGCTAGT	ref_314_reverse	21	27	14	15	28	20	27	16	28	13
TTATTTTGATTGCTGG	ref_314_reverse	33	50	42	33	50	28	41	32	43	42
TTCGGTGGCATAAAAT	ref_314_reverse	34	49	42	39	44	33	62	35	56	24
CACAGGTGAACTATCT	ref_314_reverse	10	17	4	5	7	5	11	6	14	2
TGTTCCAGTTCGCGGT	ref_314_reverse	4	5	4	1	7	4	9	0	8	1
TCGGGCAATTTGCATT	alt_314_reverse	28	49	37	24	59	37	66	30	52	31
GCCGACTCATAGTTTT	ref_314_reverse	17	6	13	19	9	21	11	13	15	17
TCGACCTTCTATCAGG	ref_314_reverse	0	1	0	1	1	2	2	0	1	0
GTAGTATCTCATGACC	ref_314_reverse	12	13	12	7	15	4	14	3	10	2
AGCGTCGCATGCCCGT	ref_314_reverse	23	40	34	28	31	31	42	30	40	17
CCTGGTCACCCTCTAC	ref_314_reverse	53	95	41	61	79	55	82	47	94	41
CAACGCGTTCAGGAGG	ref_314_reverse	0	4	1	1	4	3	5	3	3	1
CATTGGCCACAACTGT	ref_314_reverse	5	13	6	8	15	8	16	4	13	4
CTCTATTTAGATCAAA	ref_314_reverse	19	64	44	23	50	35	64	23	66	30
AGTCCACTACACCTTG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
CAGGTATGAAAGATTT	ref_314_reverse	36	60	55	25	47	28	42	29	38	35
CTTTGACTACGAGGTC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGGTCGGTCTGCC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TTACGAGGGTATACAA	ref_314_reverse	12	16	19	19	22	18	32	11	22	17
CGTTCAGTGGATGTCG	ref_314_reverse	7	18	14	9	16	15	17	17	18	4
CGTAACTGCAGTTAAC	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
TCCTGGTTTAAAGAAC	ref_314_reverse	19	30	16	21	32	18	44	15	31	17
TGTGACCATACTATAG	ref_314_reverse	7	25	9	8	21	6	22	5	26	5
CAGCCCATCAGAGCGA	ref_314_reverse	4	29	10	14	32	6	38	4	38	4
GTGTGCACCCTCCTCA	ref_314_reverse	9	9	4	7	13	8	22	6	16	4
CTTTGACTTTGCTTCG	ref_314_reverse	1	6	6	1	4	6	4	0	4	2
CTACACGGTTCCGTAA	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
GTTGATTGTTATTTCT	ref_314_reverse	12	26	23	21	28	29	23	23	23	20
TTTCCCCTTTAGCCCG	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTGTGATTACGTT	ref_314_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCCCCAATAGGGT	ref_314_reverse	14	15	10	8	15	4	13	10	22	11
GGCACGGCTCCTTAAT	ref_314_reverse	33	52	45	39	61	22	55	27	45	34
TTCTTAAGACATGTGC	alt_2789_missing	1	2	0	2	1	0	2	1	1	1
AATTAGTACCACCAGG	ref_2789_missing	11	19	11	4	19	10	19	1	18	12
GTTGTACTCACATTTC	alt_2789_missing	2	6	5	0	13	0	13	3	14	1
TTTTATCGGGGAACCC	alt_2789_missing	13	29	26	19	44	12	27	12	28	15
CGTTAGGCCCTCATGA	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
CTTATCGGCGCCACTG	alt_2789_missing	4	3	4	3	16	9	10	5	5	1
CGTCTCTAGAACAGTT	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TTCTGGCTCTCCGCGG	alt_2789_missing	9	25	11	2	27	15	15	6	18	8
GGCTACCTTATTTTTT	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TTACACCACGAAGCTG	alt_2789_missing	15	25	13	12	33	18	37	14	26	19
TCGCTAGACCAGCTCG	alt_2789_missing	4	14	4	2	3	2	2	6	7	3
ATTGGTATTTTGATAG	alt_2789_missing	25	74	30	21	84	32	88	17	70	24
CTGTAGGATTCGCACT	alt_2789_missing	1	4	1	0	3	0	3	2	2	0
TCAAGGTTTCGCATTT	alt_2789_missing	9	8	2	11	14	2	26	7	20	9
CTCTGGGTTGGCTGTG	alt_2789_missing	13	20	14	11	29	14	35	11	35	9
TCATCTTTTCGTACCT	alt_2789_missing	17	54	21	16	57	13	53	12	64	5
TCTAAGGCTGTATCTT	alt_2789_missing	13	26	24	15	32	17	32	9	40	15
CGACCCGACGGGCGTC	alt_2789_missing	25	38	17	16	38	20	52	22	53	17
GTCCCTCAGTGAGCAT	alt_2789_missing	0	1	0	0	1	0	0	0	0	0
TCACTGCCTCGGGCTT	ref_2789_missing	32	81	45	31	75	40	87	35	67	40
GAACCTCAAAAGTACC	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TATTCTTATCACTTCT	alt_2789_missing	34	39	38	25	56	23	63	30	46	24
ACGTTTATTGACTAAG	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
AAATAAACCCGCCTTA	alt_2789_missing	18	33	12	17	26	16	25	10	25	11
GACCCATGGTACACGT	alt_2789_missing	13	33	27	18	44	15	28	20	43	15
ATGTTATTCGAGCCGG	alt_2789_missing	33	45	20	16	52	21	58	18	40	26
CACTATTGTGACGTAA	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
AAACTGTTTCCTTACG	alt_2789_missing	8	28	12	15	23	6	14	10	22	8
TCCGTGGTTGTCCCGT	alt_2789_missing	1	2	1	0	0	0	0	0	0	1
TCGTGATGCCCAGCAT	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TATAACGGTCGTGCGC	alt_2789_missing	2	3	1	1	4	0	8	3	7	0
CTGTGGAGCTCTCCAG	alt_2789_missing	7	14	10	5	10	9	13	5	17	8
ATGTTCGCTGTTAGCG	alt_2789_missing	1	4	2	2	2	2	5	0	12	1
TTGGGCAAGATCGCAA	alt_2789_missing	20	47	35	28	47	23	60	33	53	23
ATCCCTTTGGCGGTTG	alt_2789_missing	1	9	0	7	5	7	8	5	10	2
AATCGTAGAATTCATC	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TCATTTCCCTGACCCG	alt_2789_missing	7	6	5	5	15	4	10	1	11	4
AAGATTTTGCTCAGCC	alt_2789_missing	32	65	34	21	51	40	61	19	57	28
CACGTTCCGGATTTTA	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
GGAATTAGCCAATAAG	alt_2789_missing	4	7	11	7	13	10	16	2	10	6
GCGGTCGGAACATTTT	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TCATCCGCCAATGGTC	alt_2789_missing	8	7	10	7	7	6	20	6	14	5
GTCTAATGTTCTTTGC	alt_2789_missing	4	7	4	4	12	1	6	3	8	9
GTGCGGTACTACTCAT	alt_2789_missing	17	21	20	5	41	12	22	14	27	8
TAATAAGTCTCTGTTT	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
GGCCAATATAACTCAC	alt_2789_missing	13	31	7	17	29	12	29	13	30	10
ATTGCGGACAACCTTG	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
ATTCTAGTAACTCTCG	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TCTCACCTTTTTGTCC	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
TGTTCCTTTTAGATTC	alt_2789_missing	0	0	0	0	0	0	0	0	0	0
AGCATACCATGTTCGG	ref_6123_new	47	29	41	34	28	48	38	30	51	29
GATCTGATTAAATGGT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CTCATGCCTGCGCTTA	ref_6123_new	116	69	110	95	83	89	83	78	87	110
ATTGTACGGATCCTTT	ref_6123_new	63	60	98	70	68	74	61	53	66	63
TGGCCAAAATCCCTTG	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CCCCGTATCACCAATC	ref_6123_new	103	235	105	98	270	98	289	108	302	97
CTTTTGGTTTTATGTC	ref_6123_new	4	0	1	2	2	0	3	4	2	5
GCATCTAAATATACGG	alt_6123_new	28	22	35	33	22	21	22	18	21	28
GGAAGCGAGTGCTCGA	ref_6123_new	24	19	38	26	27	17	31	27	27	18
CTCTCCATCCAGGGCT	ref_6123_new	58	56	64	47	52	46	51	42	56	59
GACTCCCGACAGTTAA	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CAGTCAATGAGGACTC	ref_6123_new	156	139	212	188	186	181	148	159	144	152
CTAGCTTTACCCTCTC	ref_6123_new	0	0	0	0	0	0	0	0	0	0
AACGACACCATCACGT	ref_6123_new	77	61	75	66	70	65	50	68	60	45
GTGGGCATTTATTAGA	ref_6123_new	0	0	0	0	0	0	0	0	0	0
ACTCTGTTACTCTCGT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
GTCTGGATCTCCATTA	ref_6123_new	47	44	67	41	35	43	33	40	39	44
AGAGCCCCTAGCGTGA	ref_6123_new	89	70	103	85	72	94	63	83	69	103
GTGACGAGTTAGTGTT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CAGTTCTCTCTTTCAA	ref_6123_new	200	152	199	177	198	184	193	167	207	179
AACAGCGTGCGGGGAA	ref_6123_new	24	18	16	27	18	16	16	21	17	19
TCAAGGCGCTTTAATC	ref_6123_new	0	0	0	0	0	0	0	0	0	0
TTAGGGTCCGCGACGC	ref_6123_new	2	9	3	3	3	6	4	4	5	2
TTAGCAAATCTGGAGA	ref_6123_new	87	129	123	107	109	115	120	97	124	86
GCAGCTGGTTTTAAGC	alt_6123_new	329	291	434	334	343	324	310	337	322	332
TGCTAAGAGTCACAAG	ref_6123_new	1	4	4	2	6	3	4	3	6	5
ATATTCTCGGCGCGTC	alt_6123_new	79	82	100	90	101	84	71	82	72	58
ATAGGCTTTTTTGAAA	ref_6123_new	43	33	49	55	43	38	51	38	43	43
AGGCCTTCACAGCGTG	ref_6123_new	11	11	25	13	16	18	14	10	17	22
TATTGGATTTCTCCCT	ref_6123_new	11	6	10	7	6	5	9	7	8	3
GCAAAACAGATTAAGC	ref_6123_new	48	37	51	62	51	48	44	37	41	47
TATCAGGTATCCTTTT	ref_6123_new	6	3	5	1	1	6	2	3	0	3
TGTGTAGCTTGTCCAG	ref_6123_new	0	0	0	0	0	0	0	0	0	0
ACGAAGGTGTTCTTAC	ref_6123_new	31	24	38	29	34	34	32	34	41	25
GTACAATCTCAGGCCG	ref_6123_new	40	29	39	23	27	38	31	25	24	29
TCATCAGCCCAATTTT	alt_6123_new	33	29	40	32	33	26	34	41	41	45
GAAGTGCTTGGTTAAA	ref_6123_new	10	6	15	8	5	9	11	10	7	6
TTGAGACGTAAGTTCC	ref_6123_new	52	63	63	72	49	62	59	66	58	58
CCCGGAATTTATGCTT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
GTTCTCCAGACTCAAC	ref_6123_new	24	36	25	36	31	30	31	22	24	24
GCTGGGCGCCGGGCGC	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CCTTAGTCTAATGGCT	ref_6123_new	12	14	10	12	11	12	10	11	14	10
TCTTTGTCTGCGGACT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
TGCATAGGCCTGGTCT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CTGATGTGAACGTCAA	ref_6123_new	21	12	19	20	11	15	11	9	19	18
GACAGCGGTTTCATAC	ref_6123_new	87	97	83	87	59	70	72	62	66	65
ACCCACATACTTGACT	ref_6123_new	2	5	1	1	5	1	6	4	6	3
GTTATCCTGTTACCGG	ref_6123_new	0	0	0	0	0	0	0	0	0	0
GTTACCGTGGCACCAG	ref_6123_new	0	0	0	0	0	0	0	0	0	0
TATTTGTATCTCGTCC	ref_6123_new	28	15	17	14	24	29	18	17	17	16
CGCTTTACGCCGGTAT	ref_6123_new	0	2	0	0	0	0	0	0	0	0
TTCTCTTTCTAAATTT	alt_6123_new	20	5	13	13	9	11	12	16	9	10
GAACGAAGTCACTTTG	ref_6123_new	27	26	31	28	22	26	24	21	34	18
AACATGAGGGAGCAGA	ref_6123_new	37	27	42	34	37	38	34	32	35	21
CACTATTACATACTGT	ref_6123_new	102	86	113	76	77	79	78	84	92	85
GAAATGTTAGAGTCGT	ref_6123_new	42	42	53	38	40	45	35	53	36	38
AGTTTATTCATCCACG	ref_6123_new	18	23	30	21	18	25	20	27	19	29
TAATTAGACGTTGAGG	ref_6123_new	32	25	25	30	34	21	31	37	32	20
GGCGAGTAATAGAGCA	ref_6123_new	9	9	23	21	14	20	11	13	17	11
TTGCATCTTTCGTAGA	ref_6123_new	94	87	142	132	95	121	111	76	109	101
CACCACGACGAATCCT	ref_6123_new	23	26	52	31	42	48	34	47	45	41
GAAGTGATTTTTACAC	ref_6123_new	185	187	238	207	171	186	176	193	210	182
TTCTGTTTTTTATAGA	ref_6123_new	0	0	0	0	0	0	0	0	0	0
AGCAAGCAATCTTGGA	alt_6123_new	60	56	97	81	67	78	69	65	67	52
GTTTGGAATGTTAGCG	ref_6123_new	14	10	28	18	13	14	10	11	13	14
CTTTTCGGGCGGTGAC	ref_6123_new	99	79	112	87	59	78	75	97	74	65
GCACTTCATAGATAAC	ref_6123_new	1	1	0	0	0	0	0	0	0	0
TTTCGGCCTCTGCGTG	ref_6123_new	73	72	90	75	73	64	90	74	84	80
CGTCTTACGGATATTC	ref_6123_new	90	74	97	74	87	98	92	74	78	95
TCAGCCCTCCGATGCT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CAAGTTAATTCGCAAC	ref_6123_new	62	44	87	73	62	60	59	81	70	72
AAGTTGCAACTTCATT	ref_6123_new	26	21	42	30	43	26	21	35	39	31
TGTTGTCTGTTATTGA	ref_6123_new	37	31	40	31	32	27	45	25	34	31
TCCGCTAAATGCTGGC	ref_6123_new	101	69	114	109	77	100	66	84	91	81
TCATTTGGTGCCCGAA	ref_6123_new	8	8	14	5	7	10	5	5	3	7
TCGCACATACTTCGTG	ref_6123_new	12	16	14	25	16	23	16	21	15	11
CTGGAAACTGGCCTAG	ref_6123_new	10	31	29	18	47	29	46	19	34	17
AATCAGCCAGCTATGT	ref_6123_new	211	178	219	221	215	197	184	198	207	189
ACTTTCGTACGCTTCT	ref_6123_new	18	12	16	17	14	9	10	18	10	11
GCTCGAATCCTCGTCG	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CCACTTCGTGTGTTAT	alt_6123_new	4	3	2	1	3	1	2	1	1	4
GCCGTCTTGTGTCTTA	ref_6123_new	19	7	21	24	16	16	23	9	16	15
CGGATTAAGGGCCAGT	ref_6123_new	37	12	26	27	23	23	40	26	23	18
TAAGGCTGTTGGTCAC	ref_6123_new	62	60	60	66	60	71	59	67	55	43
CTCTTAGAGATCTTCA	ref_6123_new	106	67	88	77	69	65	79	110	91	85
GTATTATACTTGCGTG	ref_6123_new	4	6	3	8	3	3	5	2	11	5
GTCAGGGTTGGTCGCT	ref_6123_new	36	32	45	55	33	34	32	34	39	27
ATTCCCGCATCGCACA	ref_6123_new	5	2	8	2	8	2	3	7	1	1
TTATATTCGATGCTGT	ref_6123_new	19	14	30	21	13	17	19	12	16	8
GATTCTGTCTAATATT	ref_6123_new	28	30	32	23	17	21	18	17	23	21
AACCTAGTGTTTCCTC	ref_6123_new	0	0	0	0	0	0	0	0	0	0
GGTATCCTTCGATAGT	ref_6123_new	13	10	16	17	19	13	10	16	16	11
GTATCTTTCACTGTCG	ref_6123_new	28	23	27	18	29	13	22	21	17	17
ACTAAAATTGGTAACG	ref_6123_new	36	34	40	32	27	39	34	27	36	25
TAACAGGGAAATTCGC	ref_6123_new	8	3	18	14	8	12	4	16	11	8
TGAGTTACCATCAGCG	ref_6123_new	0	0	0	0	0	0	0	0	0	0
TGTATCCTTTGAAACT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
AGTCTGCCAGGTACGC	ref_6123_new	1	1	1	0	3	3	2	0	1	2
GGACTTTCATATCTTG	ref_6123_new	9	8	14	7	9	8	12	11	4	2
AGATACCAGCAACCTG	ref_6123_new	8	13	13	20	6	9	3	7	13	6
TTCGTAGAGCATCTCG	alt_6123_new	65	41	81	51	46	47	54	51	60	58
ATGATTGGAGGTCGGA	ref_6123_new	15	6	16	7	11	8	3	2	10	12
GTTCGGCCTCTGACGG	alt_6123_new	73	53	61	60	72	71	60	59	78	61
GTTGGAGCACGCGCAA	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CCCGAAACCCTTCGGT	ref_6123_new	59	68	78	69	73	52	67	64	87	46
GCACGCTGTTAAGCTT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
AGCACCTTAAATAGTC	ref_6123_new	175	120	178	164	130	150	120	133	125	151
TTTATAAATCTTTGGT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
CGTGCCGTACGTCCTT	ref_6123_new	13	15	22	9	13	17	13	17	11	14
AATGTACTTGCGATTT	ref_6123_new	25	18	37	35	31	16	25	28	20	21
CCGCGGACAAGATTCG	ref_6123_new	25	28	37	20	27	28	34	24	38	22
CTGATGTTAACGCAGT	ref_6123_new	0	0	0	0	0	0	0	0	0	0
TTAAATGTGGCGTAAA	ref_6067_new	20	29	28	36	34	22	35	28	32	15
CGATCACCCAGGAGGC	ref_6067_new	0	0	0	0	0	0	0	0	0	0
AGCCCAGTCGATACAA	ref_6067_new	16	38	37	24	39	20	42	30	40	18
CCGGGCGGACTGACAG	ref_6067_new	24	25	14	24	28	27	34	14	41	19
ACGTTAGGCCTTCATT	ref_6067_new	146	206	166	164	206	136	236	131	228	157
CTGACTTACACGTTAG	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TGAATACACGACTAAG	ref_6067_new	26	32	34	11	22	23	22	13	34	15
GTACAACAGTCTCTAT	ref_6067_new	9	36	18	11	27	13	30	22	37	22
CTAAGGTATGCCCCAC	ref_6067_new	34	67	39	37	81	32	90	28	75	37
GTTTACATACCAGAGG	ref_6067_new	40	56	60	52	67	34	71	46	91	53
TCGCGGAAAATCGTCC	ref_6067_new	35	65	50	53	81	48	82	54	91	33
ACGAAATGTGCATGGG	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TTGGTCACTTATTGTA	ref_6067_new	23	43	38	34	56	30	68	37	59	24
TTCTTACAGCCAGGCC	ref_6067_new	33	46	29	36	49	35	46	35	44	24
ATCTAGCGTCTATTGC	ref_6067_new	0	0	0	0	0	0	0	0	0	0
GTTGTCAGTTGGTAGA	ref_6067_new	3	12	7	6	6	8	6	7	17	4
TGGCGGCCACAGCTGC	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CTCCTCGTAGAGCACT	ref_6067_new	90	139	124	113	137	91	166	90	133	97
CTCGTATCTATCCTTC	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TAGATGTGAGTTGTTG	ref_6067_new	27	38	27	23	27	19	37	19	43	30
CCCATAGTCAAGGACA	ref_6067_new	48	104	52	51	92	50	94	50	106	50
CTCACTTCAATTGGTA	ref_6067_new	22	63	41	35	34	34	45	25	54	26
ATTGTTTTCAGCATAT	ref_6067_new	15	19	19	10	30	10	28	11	13	8
TGGTATGTCAGTCGGA	ref_6067_new	15	29	30	23	29	11	31	15	39	13
GGGCCATCGTATACAC	ref_6067_new	3	3	9	3	7	5	3	2	5	6
CACGATTGAGTGCCTA	ref_6067_new	20	29	16	16	27	19	29	27	34	17
ACTTCGAAAATGCACA	ref_6067_new	9	12	15	11	12	12	15	16	14	9
ATTATGCGATGTTGGT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
AAGTTCGCACATCCCT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TAATTTGGGGACTCGC	ref_6067_new	3	6	7	7	8	5	13	6	7	6
TCGTTGACCGCTTGGC	ref_6067_new	6	8	10	6	12	11	12	9	18	13
TGCTTAGCTTGGATCT	ref_6067_new	16	56	34	14	33	21	33	24	41	20
GCCGTCTCCGCTCCGT	ref_6067_new	30	52	54	36	69	29	66	39	73	26
AAACACGCTTGACGAT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CGAAGAAAGCCTTGAT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CCTTCCGCCTGGATCG	ref_6067_new	18	41	16	18	26	21	31	13	38	13
TTCAAGTAACTCGATA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TTCGAGTTGAAATCAT	ref_6067_new	70	96	114	92	115	99	95	77	138	86
TCTTATCCGCGTAGCT	ref_6067_new	6	4	10	5	7	5	14	6	8	4
AATGGACTCAGTTGAC	ref_6067_new	17	27	17	20	30	18	24	21	22	21
GCTTGACAATCTATCA	ref_6067_new	17	39	16	27	32	12	42	15	41	14
TAGATCACGTACTTTC	ref_6067_new	23	39	26	31	39	24	44	19	40	16
ACTGGAGCCAATCTAC	ref_6067_new	0	0	0	0	0	0	0	0	0	0
ACTCTGTCGAGGTGAC	ref_6067_new	72	126	107	92	117	68	122	82	111	71
CAGTCTGAGGGTGCAG	ref_6067_new	61	99	77	88	118	66	114	76	117	73
TTTCACTCCGGTCTTA	ref_6067_new	20	28	19	14	35	18	42	10	27	16
TCCTTTACAACGATGA	ref_6067_new	52	82	69	64	92	48	78	48	98	53
GAGGTTGACAGACAAT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TTTAATATCTCAGGCC	ref_6067_new	60	92	80	47	90	49	85	64	96	13
TGCTTTTCATCTTTGC	ref_6067_new	13	18	6	13	14	7	11	9	15	10
ACTCCGGGGCCGTGCC	ref_6067_new	0	4	2	1	8	2	7	4	11	3
CAGTTGGTGTCGGCAA	ref_6067_new	7	7	8	5	10	6	9	6	4	10
AAGTCCATCTATTATT	ref_6067_new	24	23	32	29	23	15	34	25	29	19
TGCCGAGTCAATGTGT	ref_6067_new	11	21	12	8	8	11	12	6	14	2
GTCGTTTCACGCCCAA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
AAAGGCCTAGTGGGTT	ref_6067_new	19	17	24	26	14	12	18	11	22	10
TAGTCTCTACAAACTT	ref_6067_new	43	87	71	54	76	55	77	43	74	37
ACACACTGCAAGGGGA	ref_6067_new	17	24	24	24	33	13	30	18	24	23
TCTGTCCTGGCGTATC	ref_6067_new	36	80	38	39	107	40	106	42	125	33
TTGTTTCTTTCAGGAC	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TCGCATCTTTTTGTTT	ref_6067_new	2	2	4	2	1	1	4	1	2	4
TTAAATTCTCTTCATC	ref_6067_new	108	160	186	130	179	118	163	103	180	111
GCTAGATTCTACAGCT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CTTTGTCATGAATCCG	ref_6067_new	10	5	8	8	13	7	12	7	16	6
GCATGCGCGACATTGG	ref_6067_new	24	22	23	22	24	18	19	8	27	12
TACCCATCGTTTCATA	ref_6067_new	1	4	3	0	5	1	2	3	4	2
CTGAGGCTTAACAGAG	ref_6067_new	41	75	40	49	70	42	71	53	76	43
AGTTATCTCTTAGTCA	ref_6067_new	18	27	24	16	23	13	21	11	35	11
TTAGTGCACCCAGGCC	ref_6067_new	21	23	23	15	13	11	22	26	19	10
AATGGCATACCTACCG	ref_6067_new	0	0	0	0	0	0	0	0	0	0
GATTAATACGAATTCG	ref_6067_new	0	0	0	0	0	0	0	0	0	0
AAAATCTATTCCGGAG	ref_6067_new	50	105	73	60	74	57	80	50	106	45
TTAGTTAAGTAGTCAG	ref_6067_new	7	3	4	4	10	3	11	2	9	1
TTCTTGGTGTCGGAAG	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TGTGTCTGCAATTGGT	ref_6067_new	4	22	8	13	15	8	17	5	31	9
GGGGTAACTTTTGCTA	ref_6067_new	2	7	7	2	3	5	6	3	10	6
GCTATACAGGTCATCC	ref_6067_new	25	40	41	39	40	27	47	33	41	29
AAGCGAGGCCATTCCT	ref_6067_new	23	44	34	29	47	33	37	26	33	30
TAGGATCCTCTTTTAC	ref_6067_new	13	23	24	28	25	13	27	21	22	13
GTCGCGTAATCTAAGT	ref_6067_new	48	47	61	37	60	35	68	39	33	40
GCGCCCCTGGTACGTT	ref_6067_new	10	19	10	8	20	13	19	5	18	6
CGCATTCTGTTAGAGA	ref_6067_new	27	37	24	30	44	30	48	21	47	21
CGGTTTTTTCAAGACA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
GTCCGTCTTTTTGAGT	ref_6067_new	10	9	5	5	7	1	12	3	8	2
CTGGTTCTTCCATGGG	ref_6067_new	0	0	0	0	0	0	0	0	0	0
GTTGTACCCGCAAGCT	ref_6067_new	27	33	38	29	35	28	34	18	32	36
GAGTCAGAGTGAAGGA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TTGAAATTTACGCCCG	ref_6067_new	118	143	128	108	155	122	152	99	166	91
TTGGTTGATAGACGAG	ref_6067_new	28	25	30	18	34	35	37	30	45	21
TCGACTGGCGCCCGTT	ref_6067_new	6	6	8	5	7	4	9	5	6	6
GCTATATCAGGGTGCA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
GGAGAGCCCAACTTCA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CATAAGCGTCACAGAC	ref_6067_new	54	95	83	67	128	66	110	75	115	41
CGTAGAAGGTTTCTTG	ref_6067_new	29	33	41	32	47	40	50	25	68	37
AGGACCGTTGGCAGCT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CGCACCGCAGGCCCAG	ref_6067_new	11	3	9	4	17	1	8	6	9	4
CGGGCATCTTTTTTAA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
TCGTCAAGCTGATAGG	ref_6067_new	82	129	106	92	127	92	147	85	164	56
CCTTGGAAGTTGCAGC	ref_6067_new	2	6	1	5	12	5	6	2	5	2
GTCACGTCTCCTGCAC	ref_6067_new	24	19	14	18	37	25	25	23	35	19
TTCCAGGGATTCCGAT	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CGGTGTGACTTCGTTA	ref_6067_new	0	0	0	0	0	0	0	0	0	0
CCACCAAAGGCTCTCT	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTGAGCTTATAAG	alt_5055_reverse	73	109	101	62	145	76	129	66	149	81
CGTTCATTAGTGAAGT	alt_5055_reverse	19	21	22	31	25	22	20	21	16	14
CAGATATTATTGAACG	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCACGGTCTATGC	alt_5055_reverse	1	7	2	3	3	0	5	3	6	1
TCAACGTTGGTAATGG	alt_5055_reverse	38	51	49	30	43	39	39	28	45	37
CGCACAAGTGGCGCAT	alt_5055_reverse	45	62	41	48	63	33	61	37	56	42
AAAACCTTTCTAAGGT	alt_5055_reverse	107	138	114	108	116	103	157	101	136	106
ATCTTTACGCCACGTC	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
GATCAATTAAATTATT	alt_5055_reverse	2	4	2	1	7	3	6	2	5	8
TCTTCGGTGGGCGCGT	alt_5055_reverse	18	14	22	11	10	14	21	14	20	15
GGGTATTATTAATCTT	alt_5055_reverse	92	81	121	92	78	91	90	67	77	73
TCCGAGATCATCTTAC	alt_5055_reverse	27	37	26	23	37	14	20	19	40	10
GTTGGCACACTCACAG	alt_5055_reverse	47	56	55	43	68	29	58	37	63	31
CGGGCGCTCTTGATTA	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
ATGGATAGGATAAGAT	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
CATTTTTTCATGAGGA	alt_5055_reverse	6	9	12	5	11	12	12	8	4	8
AGTTCGTTTGTACCCA	alt_5055_reverse	5	8	3	8	8	4	6	4	15	4
CTCTCTGTCTCTGCCA	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
CTACCTTAAATGAACC	alt_5055_reverse	79	109	105	93	141	79	108	87	118	93
CCGTCAATCTTTAGCG	alt_5055_reverse	21	18	11	8	19	12	17	13	24	8
TATGGGTGGCACCGGG	alt_5055_reverse	28	51	50	45	57	36	38	37	56	28
TTATGGAAGTGACGTT	alt_5055_reverse	4	3	2	5	1	3	5	3	0	2
TGCCTGTCCGAAGAGT	alt_5055_reverse	11	12	4	15	16	13	14	7	15	6
CGATTCACGGTCCTAA	alt_5055_reverse	36	21	39	18	30	26	40	24	39	33
GGGTCACGTGTTTCAT	alt_5055_reverse	55	72	79	53	83	65	66	55	81	57
ACCTTTTTTAGTAATG	alt_5055_reverse	60	59	55	53	64	47	69	29	62	34
CCTTCCAACGCCACTC	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGTATGCGCTCC	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
TCTTACTTCCAACACT	alt_5055_reverse	3	11	11	7	9	6	6	3	2	5
GGCGCGTTGGTTGTTT	alt_5055_reverse	52	55	54	44	54	55	67	31	64	42
ATACGTAACAGTCCTC	alt_5055_reverse	6	6	4	3	3	2	8	6	11	4
AAGGATGTGGTTGATG	alt_5055_reverse	34	27	30	37	25	31	38	30	32	23
ATGTAAGTCGTCCAAG	alt_5055_reverse	51	55	48	52	54	45	50	42	68	31
CCGTTATGTCCTGTCT	alt_5055_reverse	24	20	19	18	36	13	22	13	22	19
CTTACGTGTATTGACT	alt_5055_reverse	5	10	2	3	9	4	6	0	6	1
GTTTGTTACCGATATT	alt_5055_reverse	26	15	21	26	28	16	20	27	26	26
GTTACAGAAGCGTCTT	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
CGGGACTTGGCAGCTA	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
CTAATTTGGCAACAGC	ref_5055_reverse	50	70	54	34	53	39	59	41	84	29
ATTGCATAATTCAGTA	alt_5055_reverse	14	20	35	15	38	21	24	21	21	21
TCCCTTTCAGTTTTCT	alt_5055_reverse	5	2	3	1	3	1	1	1	2	3
ACGTTTCCGCAGACAA	alt_5055_reverse	3	3	2	2	3	1	5	0	2	1
ATTGTTGTCTGGCCGT	alt_5055_reverse	35	44	45	39	34	31	40	31	49	35
TTCAAAGCGGGAGCAT	alt_5055_reverse	64	81	99	85	107	94	96	78	88	64
AGTTTTACTTACCTAT	alt_5055_reverse	1	2	2	1	12	3	8	1	16	1
CCGTATTATTCGAACG	alt_5055_reverse	54	74	48	45	48	49	54	27	46	42
ATCTCACCCTTAGGTT	alt_5055_reverse	0	0	1	2	0	0	6	2	1	0
GGTGCGCCGAGCATAA	alt_5055_reverse	13	14	24	17	20	15	27	18	17	12
TAGGCAGTGACTGCGT	alt_5055_reverse	14	14	11	8	15	15	19	10	22	13
TTACGGACCTCCTGTT	alt_5055_reverse	52	43	49	39	42	30	52	33	50	40
CTCCACGTTAGGTCCC	alt_5055_reverse	0	0	0	0	0	0	0	0	0	0
AAATGAGACCATGCAC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
CGCTTTACAGGGTATC	ref_5923_new	22	30	40	33	49	24	45	23	43	18
TAGCTATGCGTACTGT	ref_5923_new	12	12	23	15	15	13	18	12	19	6
ATTGCATCTGGTCTAG	ref_5923_new	0	0	0	0	0	0	0	0	0	0
TCGTGTTAGCTTGTAT	ref_5923_new	0	0	0	0	0	0	0	0	0	0
CTCGTGGCTAACTTCT	ref_5923_new	51	75	69	59	98	59	88	42	91	59
AGACTTATGGCCCGGG	ref_5923_new	41	63	50	50	57	42	56	48	62	35
TCCCGCTTGCGCGCCT	ref_5923_new	3	24	1	2	21	11	11	1	22	3
GGTACTGGTACTATTA	ref_5923_new	7	28	25	18	28	31	34	12	33	16
CCTACGTCGGGTTTCG	ref_5923_new	15	29	34	18	26	16	23	9	42	9
AGGGTCGCGATCAGTG	ref_5923_new	42	86	54	41	74	57	85	42	69	54
ATATGTCAATGGTTAT	ref_5923_new	7	7	5	4	17	5	15	6	14	11
AATTATTTATTGAATA	ref_5923_new	7	17	22	9	18	7	19	12	19	16
TACTTCGTATTAGATT	ref_5923_new	3	3	2	8	4	4	6	4	7	4
CTGGCACTGCAAAAAG	ref_5923_new	8	26	13	9	19	15	19	14	30	12
AGCGATAGAACTCGAG	ref_5923_new	5	1	3	2	5	4	10	6	5	8
TTTCCTGGGGTTAAGT	ref_5923_new	16	20	19	19	15	15	29	17	32	25
GGTTTAAGTTCTGCGA	ref_5923_new	25	46	41	25	33	26	38	19	46	29
GCATAATATGCTAGTC	ref_5923_new	11	24	8	5	24	3	20	10	18	9
TTGGTGATGCCAGATC	ref_5923_new	9	19	23	11	24	16	20	8	20	12
CAAAATGCCTTGTAAC	ref_5923_new	15	16	19	9	23	14	29	9	17	15
CTCCATCCACTCCATT	ref_5923_new	0	0	0	0	0	0	0	0	0	0
GTGGGTCCAAGTAAGG	ref_5923_new	17	32	10	23	25	27	20	14	37	21
GCAACCATGCTGACTT	ref_5923_new	6	11	8	9	14	17	13	10	9	11
TACGCCTCCCAGACTC	alt_5923_new	0	0	0	0	0	0	0	0	0	0
TCCTCGTAAGTGCACG	ref_5923_new	8	15	5	9	18	10	22	7	11	8
TATTTGGAAAAGCGAT	ref_5923_new	18	14	18	17	18	11	21	10	21	11
CCTGGTATGTCTTGCG	ref_5923_new	23	42	18	21	42	26	48	14	50	21
ATATTGTTATACTTGT	ref_5923_new	0	0	0	0	0	0	0	0	0	0
AAACACAGGCAGTTCA	ref_5923_new	106	145	121	84	144	88	165	83	162	69
AGGTTCTCGAGTGAGA	ref_5923_new	6	7	6	7	8	4	11	5	13	10
GCATGGGTCTCATCAC	ref_5923_new	8	8	6	12	11	3	11	9	8	5
CTACAGCACTTGTTGC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
ACGTTATATAAACTAA	ref_5923_new	17	51	37	22	32	20	45	16	52	13
TTCTTTTCTTTATAGG	ref_5923_new	0	0	0	0	0	0	0	0	0	0
GACCCAGTCCGACACG	ref_5923_new	9	14	8	12	4	5	10	10	16	6
TGACTGTATCGACCCG	ref_5923_new	134	211	165	140	194	140	234	136	221	139
CTTCGACTTAGCTTAA	ref_5923_new	11	11	17	14	26	14	16	8	12	4
GCGTCGACGAAGCAAA	ref_5923_new	0	0	0	0	0	0	0	0	0	0
ATCTTATCCGCGCCCA	ref_5923_new	10	12	9	3	16	10	9	6	7	6
TGTTTATTACCGGGTA	ref_5923_new	0	0	0	0	0	0	0	0	0	0
CCGGCAAATTCAGGAT	ref_5923_new	0	0	0	0	0	0	0	0	0	0
CGTAAAGAACAGTTGA	ref_5923_new	0	0	0	0	0	0	0	0	0	0
AATGGCCGCTGTTCCA	ref_5923_new	0	0	0	0	0	0	0	0	0	0
CTCCGCAGAGCCTGGT	alt_5923_new	20	24	20	17	33	8	34	13	29	15
CCACATCAGTTCTTTG	ref_5923_new	11	21	13	5	12	12	20	12	25	13
TCTGTTCTTCCTTGAC	ref_5923_new	18	31	23	15	21	12	21	11	16	17
AGGCGTTCGCATGCAT	ref_5923_new	0	0	0	0	0	0	0	0	0	0
GCTTGAGTTAGCAACT	ref_5923_new	12	40	18	18	41	24	42	26	54	18
CGTCCCAATGCGCTAG	ref_5923_new	14	41	36	14	42	14	51	19	44	17
TGTCAATTATTTAAAT	ref_5923_new	0	0	0	0	0	0	0	0	0	0
GGGTGTCTGCCTAAAT	ref_5923_new	5	6	5	8	2	2	5	3	9	5
GTCATAAGGTCGTGAT	ref_5923_new	28	38	26	25	36	20	38	19	30	28
GTAACACTGAGAAACG	ref_5923_new	6	10	10	3	10	3	9	4	13	5
TCTCGATAACCGCTCG	ref_5923_new	25	39	24	30	45	21	51	30	38	33
TTCCTGTTGCGTGGTC	ref_5923_new	11	13	3	5	13	13	13	13	17	5
TCGAAACGTAAATAAC	ref_5923_new	33	64	41	39	42	28	63	36	57	31
GCGAAGTAAGCTGGAT	ref_5923_new	34	46	28	27	45	29	37	26	48	16
CTTTACGCCGCAGATT	ref_5923_new	3	9	9	13	8	6	8	8	12	2
ATTTACTGTATGTCCA	ref_5923_new	26	36	33	27	63	20	40	21	43	24
ACACTCCTACTTTTCT	ref_5923_new	4	39	6	6	41	7	40	6	43	4
TAGTGGGAGGTCCCCG	ref_5923_new	14	14	18	15	15	7	26	12	17	9
TGTCTCTGTTGGTTCC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
GCGTCAGTCATATGTA	ref_5923_new	0	0	0	0	0	0	0	0	0	0
GGCCGCTTCAGCTCGA	ref_5923_new	94	116	108	91	109	82	116	72	152	63
GAATGCTCACACACCG	ref_5923_new	32	30	28	35	30	22	47	29	59	18
CAGCAAGTGAGGGCCC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
AGAGTCTCTATTAGTG	ref_5923_new	8	36	16	15	24	13	29	16	27	4
TCTGCCTCTGCTCCCC	ref_5923_new	43	82	67	59	97	50	89	34	91	52
GGCAGGCCAGACTATT	ref_5923_new	10	18	15	5	23	8	16	5	8	6
ACTGTTGCTTCTTCTG	ref_5923_new	69	72	84	63	80	75	80	60	93	56
AAGGTGCGTCTCTAAA	ref_5923_new	35	86	56	58	70	46	85	36	78	39
GACGGGTAGACCTGGA	ref_5923_new	25	44	33	29	34	27	51	27	41	33
TAATTTTGTGGCCGCT	ref_5923_new	79	112	92	95	112	113	140	78	121	68
GGGCTTGGCCACAGAC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
TATCTCGACCTCAGTC	ref_5923_new	24	45	33	29	63	34	58	33	47	23
CCTCTGTTTGCCTATT	ref_5923_new	22	53	46	26	37	27	46	23	55	21
ATGGGGGCTGTTCAGC	ref_5923_new	22	30	27	19	28	12	24	16	36	21
GTTTTAGGATAGTAGC	ref_5923_new	13	16	7	6	17	13	28	17	17	10
ATTTACATGTTTGCGA	ref_5923_new	66	78	80	72	79	59	91	46	116	50
AAACTGAGTTCCCCGG	ref_5923_new	9	14	21	10	22	6	15	6	22	10
GAAGGCAAACCACTGT	ref_5923_new	9	15	16	1	8	5	10	6	19	10
ACCTGAGGTTCCGGGA	ref_5923_new	63	103	58	63	108	63	103	49	113	48
TGTCCGCTTCTGTAAA	alt_5923_new	139	177	144	125	196	143	214	112	262	126
CTGAGATCTCAGCGGT	ref_5923_new	10	22	24	21	21	15	37	5	22	6
TGGTGTTCCCTGTGCT	ref_5923_new	24	25	17	15	34	25	41	19	36	17
GGGCGCGTCAGGAGCC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
TAGCATTATTGTTCTC	alt_5923_new	39	67	44	62	80	41	67	37	89	48
TCTTTATCTTTGGCAG	ref_5923_new	0	0	0	0	0	0	0	0	0	0
TGCCTTGCTAGCCGCG	ref_5923_new	35	38	39	27	61	15	67	42	53	20
TTTAGCTCGTAGCAGG	ref_5923_new	13	27	15	4	18	15	25	8	35	14
CTTACGGTGTGTTTGT	ref_5923_new	94	119	112	95	146	95	94	101	113	92
GTTTGTCCAGACAGCG	ref_5923_new	17	15	11	17	13	12	18	6	16	7
CTGCGGCAAAAATATG	ref_5923_new	7	8	4	11	11	4	5	4	12	4
TGAGCTCAACGCTTTA	ref_5923_new	5	2	3	2	9	2	6	1	9	2
GGACCGCGCACGGCCG	ref_5923_new	43	90	50	51	73	46	76	36	80	49
AGCCTGTTGTTATAGC	ref_5923_new	13	21	12	9	23	12	29	5	21	6
TCTGTTCGAGCTCTTG	ref_5923_new	27	31	32	25	30	26	40	38	41	36
CCCCATGTAGGATTGC	alt_5923_new	87	164	135	107	166	123	183	86	160	98
TCCTGCCGACGTTCCT	ref_5923_new	13	21	16	7	21	10	20	15	21	11
AGACGTCACCCTGGGC	ref_5923_new	68	93	104	74	123	61	119	70	88	60
GTTTCTCAGTGGCCTC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
GCTCTTGTAGCACCGC	ref_5923_new	0	0	0	0	0	0	0	0	0	0
CCGCGATTTTCGTCAG	alt_5923_new	44	90	47	49	86	63	106	44	99	30
ATCTAAGTAAAGGGAT	ref_1598_negative	26	24	29	24	23	20	37	27	23	11
TGGTTAGTTATACCAT	ref_1598_negative	11	13	10	9	7	9	17	12	21	4
TAGTTCACTAAAACTA	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
GTTATCAGTCTACGCC	ref_1598_negative	96	172	150	132	158	87	178	87	165	111
CCTATAGGGATTAAAC	ref_1598_negative	11	22	27	7	26	5	27	15	23	9
TGCAAAACATGTACTG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CCCTTCTGGCACAAGC	ref_1598_negative	55	135	77	77	140	55	148	70	155	60
TGTGTATCGTTAGGTC	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
ATGTTTTGCCGGCACG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CTTATAGCCTTTACGC	ref_1598_negative	51	92	63	49	93	55	97	51	106	46
TAAATGCAACACTCAC	ref_1598_negative	32	61	35	38	51	35	56	41	73	37
CTGGCACGTGGTTCGG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CGTAAACCGCGATGTA	ref_1598_negative	64	85	61	62	91	43	101	39	87	46
CATGCGATTTTACCTT	ref_1598_negative	4	9	5	7	13	5	10	5	12	7
GGCGGTGCGGCCCTGG	ref_1598_negative	1	3	2	3	2	2	3	4	2	1
CACTGGCGGGGCCTCA	ref_1598_negative	6	5	11	8	14	8	10	14	10	11
TCCAGATTATGGGGTT	ref_1598_negative	11	16	11	4	16	6	20	12	21	7
TGTCTCGCTTAGAGTA	ref_1598_negative	59	92	70	50	108	54	136	45	107	52
AGAGACCAGTATATGC	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CATACATGCATGCTGG	ref_1598_negative	16	40	30	9	46	20	30	18	25	23
TTGCAAGGTTCCTGTT	ref_1598_negative	8	33	11	13	19	17	26	13	27	14
GTTTAGTCTTTTTCCC	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CGTTTATCCGCGTATT	ref_1598_negative	18	34	35	21	32	28	39	18	44	26
CATTGATTCAGTCTGT	ref_1598_negative	39	14	55	59	14	41	12	44	16	39
CGATCTGGGGCCTTCG	ref_1598_negative	21	38	25	23	43	11	31	20	36	12
GAGTACTTAGTGTGGG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CCAAATTTATGTGGGG	alt_1598_negative	15	36	18	17	30	22	23	11	26	11
GCCAATAGCTTACTTG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
TAGTATCGCTTTGGTT	alt_1598_negative	46	57	41	45	55	39	78	32	70	26
CAGGTGATCGGCGCCC	ref_1598_negative	1	1	4	3	6	2	5	2	2	0
TTCTCGGCGTGTAATC	ref_1598_negative	36	61	53	43	52	48	57	41	54	46
GGCTCCCGTTGCCTCG	ref_1598_negative	82	77	85	62	93	62	107	51	73	48
TGGTGATGCAAACATG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
GAAGTCTTGTAACCCA	ref_1598_negative	34	46	36	35	52	33	59	32	42	30
TAATGTATTCTGTCGT	ref_1598_negative	2	4	5	5	6	3	10	3	14	4
TTTGGAAACAGATTTC	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
TGAGTGGCTGCCGGGT	ref_1598_negative	2	6	11	4	8	7	5	9	8	9
TGTTTTCGCATTTGTC	ref_1598_negative	33	54	55	42	57	34	48	53	57	41
TCTCACTGGTAGGGTA	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
TTTGGACCGGGTATGC	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
ACCAGCACCGCCCTCT	ref_1598_negative	70	166	80	68	164	50	196	89	178	71
ACGTTATTTTGCGGCG	ref_1598_negative	7	29	11	10	23	18	13	6	20	13
TGGTTTGATGCCTTAG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
GAGAGCTTTGTCCCCC	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
ATTGCTGCCAGTATCT	ref_1598_negative	15	13	20	11	24	17	26	9	20	13
AAGTGTTTCTTGAGCC	ref_1598_negative	3	13	9	8	9	6	11	12	8	6
CAGGTGGGCGCCTAGT	ref_1598_negative	33	55	33	32	63	41	50	30	38	32
GTATTTCCTAGTTGTA	ref_1598_negative	41	87	65	64	98	56	86	57	111	46
TTAATCTTGAGCTGTC	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CCCAGTATCCTTTAAG	ref_1598_negative	0	2	0	0	2	1	4	0	4	1
TTTATTCTAGCTTAAA	ref_1598_negative	8	22	13	11	21	10	18	12	24	12
TGCCTATTATTTGAGT	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
GTCTTACCAATCATAG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
CGGTTCTCCGCTGTCC	ref_1598_negative	5	28	4	17	25	8	30	4	23	8
TTATTTCCAATCTCTT	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
TTCCTCGCTTTGCACG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
TACAAGAATGAGACCA	ref_1598_negative	19	28	30	16	36	16	39	13	42	13
TCCCGCTCTAATGGAA	ref_1598_negative	3	2	4	1	6	5	9	1	4	2
TGCCCCTTGTGCCCGC	ref_1598_negative	69	109	94	86	104	57	93	63	116	52
GCTCAAGCGCCGCGTT	ref_1598_negative	3	6	6	4	5	5	14	4	5	7
CCTTACGAGTGGACTG	ref_1598_negative	58	80	51	59	134	66	101	61	146	51
TGATCAGGACTGGATC	ref_1598_negative	87	153	93	81	137	80	153	68	137	98
TTGGCGGAATCTCCTG	ref_1598_negative	0	0	0	0	0	0	0	0	0	0
AACAGTCACTCCTTAC	ref_1198_upstream	102	137	117	122	132	101	142	120	137	97
TTAACGATGACCGACA	ref_1198_upstream	241	71	269	205	95	182	75	166	85	208
CTCATTTGTGCACGGA	ref_1198_upstream	269	97	262	247	110	227	112	205	99	229
GATTTGTGCTATACTG	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCGGGGGTCTTTT	ref_1198_upstream	133	57	172	124	59	131	48	107	63	127
GACAAATTGGTTCTAC	ref_1198_upstream	17	5	22	14	2	14	9	13	3	16
ATCACCTCTAGGCTCC	alt_1198_upstream	196	92	242	211	109	192	116	186	122	171
TCCCGTGTGCGGGAAA	ref_1198_upstream	119	39	132	84	62	92	45	92	41	101
CCAAGTTAGCTTCGCC	ref_1198_upstream	372	195	487	398	195	323	193	341	195	297
GGGGTCTTTGTCCAAT	ref_1198_upstream	42	8	53	36	9	44	15	36	7	37
TGTAACCAGCAGCCCA	ref_1198_upstream	0	0	0	1	0	0	0	0	0	0
CCTGTATGAAGCATGA	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTTTATAGCTTC	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTTGTACGCTTGG	ref_1198_upstream	42	32	22	21	18	17	40	21	39	15
GCGGGCCCACGGGGGG	ref_1198_upstream	36	10	49	49	17	45	17	39	13	37
CAGGCAGCTCAACCAA	ref_1198_upstream	98	51	134	100	78	109	66	90	70	97
GGCAGCAGGTTATTTC	ref_1198_upstream	54	20	70	57	28	55	13	75	25	53
ATGCCTCCTTGCGCAC	ref_1198_upstream	119	50	142	121	42	117	48	113	51	100
GTTACAGCATCGCGGT	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCCTTACGTGTCT	ref_1198_upstream	386	158	437	330	180	326	130	308	155	349
GTCTCTTGTTTAATTT	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TATCATTTCTTAGCTT	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
GCGATCTTGTTTTTCG	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
GAATTGACCTGGTTGC	alt_1198_upstream	242	82	285	228	114	211	79	232	97	200
TGTGGCATGTGTCCGC	ref_1198_upstream	194	81	252	207	54	218	65	172	91	186
TCTTCGAATTCTAGGA	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCTGCGGTGGTAT	ref_1198_upstream	51	20	55	69	16	40	18	28	8	38
TGTTAATCGTTACCGT	ref_1198_upstream	140	52	125	123	48	138	58	125	55	121
CGACCGTTGCCAAACG	ref_1198_upstream	47	11	41	34	14	50	19	43	14	43
ACCTAGACGTTTGCGT	ref_1198_upstream	32	20	30	44	25	44	28	21	28	31
CAAAACGGTACTCCCG	ref_1198_upstream	101	26	91	77	25	73	39	78	36	77
GTTTGTTTAAAGTGCC	ref_1198_upstream	37	15	52	61	22	36	18	40	17	37
TCTAAAACCCACTTGG	ref_1198_upstream	27	15	25	21	9	18	11	21	10	16
ATCCCTCGGGCCCTTA	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCCGGGATCACTG	ref_1198_upstream	330	117	418	323	107	297	125	252	116	314
TACTCGTTCGATCTGG	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGCCGACACGTTC	ref_1198_upstream	127	68	150	126	50	112	37	107	67	113
CCTAAATAGTAGAACA	ref_1198_upstream	20	10	19	33	9	21	17	22	11	15
TAACTGGTATGAGTCC	alt_1198_upstream	290	73	317	255	91	268	89	249	91	262
GCACCTCTTTGACGCC	ref_1198_upstream	1	0	0	0	0	1	0	0	0	0
CATCTATAACCTGAGT	ref_1198_upstream	88	30	109	100	36	90	30	73	56	70
GCCTACGTGAGGTCTA	ref_1198_upstream	221	86	229	217	65	212	76	184	80	197
TATATATTGCTAAGAA	alt_1198_upstream	407	126	493	393	109	389	119	383	129	346
CCGCAAAACAGGTTCC	ref_1198_upstream	113	79	192	150	80	114	77	140	87	117
TCCTGCGTCGGGGTGC	ref_1198_upstream	211	71	241	143	71	175	76	176	78	185
GTTCTAATTTAAACAT	ref_1198_upstream	19	16	17	13	12	14	6	16	19	24
CAAGTTGGCCAGAAGA	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGCCGAGAACTCC	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTGGCATCTCTAT	ref_1198_upstream	89	23	99	94	31	114	26	92	26	104
TACCTGCCCGTACTCG	ref_1198_upstream	26	23	66	52	16	36	14	52	18	37
TGATCATTACTGTAAC	ref_1198_upstream	149	48	179	152	57	126	59	126	67	129
TCGAAGCGAAGGTATC	ref_1198_upstream	248	80	303	226	75	231	69	217	78	220
GGGCGATTATCGGTCT	alt_1198_upstream	189	108	240	207	141	184	115	184	130	163
GATAGAATTTACTCAG	ref_1198_upstream	115	33	102	111	24	78	46	79	32	83
ATGCTCCAGTCCGTGA	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAGGAGCCCTGGA	ref_1198_upstream	1008	415	1158	988	352	942	386	891	425	891
TTCCCGTGTATATATC	ref_1198_upstream	113	32	159	127	49	108	40	105	49	119
ATGTGCAGTCCGCTGT	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTATGATGACCCT	ref_1198_upstream	3	3	9	7	3	9	0	3	0	8
AGCTCTATCATGTATT	ref_1198_upstream	73	25	80	59	30	49	34	57	39	74
TCGCTATTCCTTTATT	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TATTCCAGTGAAGTTT	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCTCTTCGAAGA	ref_1198_upstream	135	39	199	120	56	121	42	129	53	153
CTGCCGTTTTTTTGTA	ref_1198_upstream	336	121	317	288	122	259	111	276	144	233
ATTCATGATTTTTGAG	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTTTCGATCACT	ref_1198_upstream	52	27	56	56	20	44	23	52	23	50
CTTCTCTATTCGACTA	ref_1198_upstream	57	31	101	76	28	63	30	72	26	60
GCATATCTTGTAAAGC	ref_1198_upstream	58	23	55	49	20	38	19	47	21	22
TTATTACATAGCAGCC	ref_1198_upstream	142	53	157	145	43	134	66	112	73	119
TTTCCGCTATCTTGTA	alt_1198_upstream	38	24	43	53	23	40	23	33	25	33
TTCGGGCAAGAAATAT	ref_1198_upstream	177	54	197	173	70	156	64	180	62	155
GAACGCCCGAGACATG	ref_1198_upstream	176	48	145	158	51	151	55	132	51	153
TCTTGCTACTTCCAAC	ref_1198_upstream	141	41	136	107	45	112	45	112	48	118
GGAGCTGGCAGACAAG	ref_1198_upstream	80	27	112	111	29	96	29	82	31	101
TAACTGTGGGACTGGC	ref_1198_upstream	157	72	222	178	64	164	64	169	59	162
CTACTCGGGCCACTTC	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TATTATGGCAATTTCC	ref_1198_upstream	214	74	268	204	74	220	88	210	79	194
CTACATAATTTGCTTT	ref_1198_upstream	82	34	100	94	30	72	46	82	54	67
CGCATTGCCAGGACAC	ref_1198_upstream	37	13	39	36	20	35	21	34	21	50
TGGCTGATTTCTATAC	ref_1198_upstream	71	15	53	54	18	54	18	56	18	44
CTCGTTGGACTTCTGA	ref_1198_upstream	188	56	222	197	80	196	53	156	94	158
CGTGTTAGCCTGACTA	ref_1198_upstream	412	165	501	394	160	445	190	353	174	392
TGGTCCGTTCGTTTTC	ref_1198_upstream	188	60	221	189	73	203	74	187	72	176
CCGCTACATTACGCGA	ref_1198_upstream	186	80	246	213	115	215	101	206	120	183
CCTGCGACTGATATTT	ref_1198_upstream	45	14	31	37	18	40	16	41	29	39
TAACCGTGCCCTGTTG	alt_1198_upstream	167	129	239	188	140	156	136	195	133	157
GAGGACTAAAGTTCTT	ref_1198_upstream	482	163	524	502	140	431	166	376	151	458
TTCTTTGGGGCCGCTC	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
AGCAGTGGTGGTTTGT	ref_1198_upstream	11	18	19	18	13	11	12	12	8	10
AGAGCAAATCGTCTAG	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCACATTTCTTGG	ref_1198_upstream	79	31	107	94	38	94	36	107	34	76
GCCGAGACGAGCAGTT	ref_1198_upstream	34	13	34	33	21	20	12	26	9	26
TCACTGCGTTAACGCG	ref_1198_upstream	0	0	0	0	0	0	0	0	0	0
TGGATTGATTGAATTT	alt_5083_reverse	224	87	281	246	48	215	77	188	75	213
GGTCGATTTTTAGATG	alt_5083_reverse	90	68	129	122	78	84	86	95	67	93
GTATCAGTCGTCCGTT	alt_5083_reverse	26	11	28	28	9	15	5	23	13	21
GTTTCCTTTTATTTTC	alt_5083_reverse	65	21	76	56	19	75	16	72	20	55
CGTTTGCGCCTATAGG	alt_5083_reverse	64	41	81	86	30	74	30	56	29	76
TAAGTTTCAAGCACAG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GACGTTAAATGCTCCT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGTACGCTCCAT	alt_5083_reverse	450	170	542	499	156	446	161	449	156	396
ATTTCCGACTCTCCGG	alt_5083_reverse	84	31	116	94	55	86	36	92	59	85
TCGTCTTCTATTACTT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCTGCCTATTTAT	alt_5083_reverse	58	23	86	64	30	57	21	79	13	71
GGGCTATCCGGCATAT	alt_5083_reverse	47	13	36	36	19	37	13	33	16	42
GTAGGATTTGCTTGCC	alt_5083_reverse	104	43	118	119	37	106	34	123	50	74
ATCTCGTCATCCGTTT	alt_5083_reverse	115	53	166	103	43	108	46	115	54	94
TCTTATTAATCTACTT	alt_5083_reverse	131	38	141	152	47	124	42	112	47	108
GTTCTTCACCTGGTTA	alt_5083_reverse	259	91	336	285	92	265	85	269	99	235
TAGTTTTTAGTGGTGT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCTGGGCGTTTTC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTAATAACGTATC	alt_5083_reverse	109	32	107	75	35	87	33	76	27	82
CCAATTGTGGCTATCC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TATAATCACCTTGGTT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCCCGCATAGTGC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GAGCATGGATGTAGGT	alt_5083_reverse	203	75	264	273	78	197	83	223	80	188
ACGTCGTTGTCTTGGC	alt_5083_reverse	29	7	34	29	7	39	13	38	10	22
CCTGGATGTGTCGCAG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTTTGTCACCCCC	alt_5083_reverse	92	45	92	92	40	78	45	90	39	75
TGACTCATAACCTTAT	alt_5083_reverse	86	18	94	72	17	71	17	58	16	65
TCAGGATACAGGTTAT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTTATACATACAG	alt_5083_reverse	0	0	0	0	0	0	0	1	0	0
TAGGTCCCTCGGGTTC	alt_5083_reverse	87	27	88	78	31	92	33	75	33	75
AACCTATACGTATGTC	alt_5083_reverse	72	38	67	62	20	38	31	64	25	72
CGTAGGTTAGCTACGA	alt_5083_reverse	384	124	447	401	131	375	147	384	129	362
GTAAGTGATGCGTCGT	alt_5083_reverse	206	78	265	212	57	186	77	193	74	186
TAGTATGACATATCGT	alt_5083_reverse	154	75	213	210	63	166	64	135	49	158
TAGTTCCTCTCCTTAC	alt_5083_reverse	58	19	58	66	20	55	16	54	17	49
CTTCTTTGATAGTTGC	alt_5083_reverse	17	7	16	15	6	20	8	18	2	16
TGCTACTTGGAGGATC	alt_5083_reverse	32	13	52	40	16	30	17	48	15	22
TTCGGGCACGTAATCT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCGTCTGTCACGG	alt_5083_reverse	302	87	380	326	106	311	94	312	91	269
TTCGTTTCCCAGGTAT	alt_5083_reverse	11	6	11	11	3	8	6	14	6	7
TCGCCTGCTAGCTTGT	alt_5083_reverse	36	13	49	32	22	40	19	39	24	49
GAGACTTCACTCTTCC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGTGCTTACGCTG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGAATACGACGGT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TATTAGCAACGCCTTC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGCTTGATTTTTT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GATCTGGGCCAGTGTA	alt_5083_reverse	82	72	133	101	39	103	38	95	50	94
CCAACCGGCCTAACCA	alt_5083_reverse	210	94	271	253	78	194	87	209	89	183
ATGTCAATCGAAGAGA	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GATTTCTTAGGGCCTC	alt_5083_reverse	37	14	51	51	10	54	13	36	9	38
AAGTACTCGGACCGGT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TACAGGTCATCTGCTT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGCAATGGCAAGC	alt_5083_reverse	326	98	399	375	107	318	139	272	142	281
GTGAAGGGCTAGCGGC	alt_5083_reverse	5	4	11	7	1	7	2	10	1	6
CATGGTATGTTTTAAT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGATGCATAGAAT	alt_5083_reverse	65	24	97	68	28	70	22	86	28	66
CACTTGAGGCATCGTT	alt_5083_reverse	19	5	12	8	3	18	5	9	5	9
CTCTTCAGTTGATGCT	alt_5083_reverse	371	199	548	477	212	424	193	416	193	359
GTACGAAAGGGTAAGT	alt_5083_reverse	87	20	114	111	32	92	27	94	15	86
GTCAAGGAGGAATTCT	alt_5083_reverse	99	29	108	105	26	96	29	84	22	87
CGTTCGATAAGCCATT	alt_5083_reverse	62	23	67	60	29	54	20	60	22	40
ATTGGATTCCTTGCTG	alt_5083_reverse	279	64	342	293	76	265	76	234	89	235
TTATTTGGACGCCCGG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCCAATTTTTCCTTTA	alt_5083_reverse	138	30	168	138	64	145	45	152	43	128
ACATAGTTACCACCGC	alt_5083_reverse	136	63	185	148	47	115	53	138	63	110
ATGCCCTGCTACTTGT	alt_5083_reverse	105	28	113	138	37	100	38	106	41	85
AGGACTCGCTTATTTC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCCACACATGCTCTGC	alt_5083_reverse	34	17	26	38	17	33	27	31	19	28
CTAGTCTCAGTACTTT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCCGGCTAGGTAA	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CAAGTGTTCGGCCATC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGCGCCGTTATCG	alt_5083_reverse	44	25	77	49	19	48	19	45	19	39
CAATTCAGTAGGATGC	alt_5083_reverse	56	21	66	59	22	41	29	64	19	50
TCCGTGTTGCTTTCCC	alt_5083_reverse	31	14	56	52	15	39	21	44	25	51
TATTGTAAGTGTTGGA	alt_5083_reverse	67	11	82	80	22	74	20	59	27	53
GATGCTTAGTGATCAT	alt_5083_reverse	64	25	79	68	29	60	22	60	29	62
TTATTTCCGTCTATAG	alt_5083_reverse	12	6	15	12	4	15	8	14	4	13
AATGTCATATCTAGGG	alt_5083_reverse	232	80	274	270	86	242	93	201	79	190
TGTTATTTTCATCTCT	alt_5083_reverse	328	106	447	368	118	305	120	318	122	267
TTTTGTCCGGGGCTGA	alt_5083_reverse	79	28	98	91	27	72	27	91	33	74
TCAGGAGGTGTATGGC	alt_5083_reverse	112	40	142	123	37	112	49	117	56	110
TTTCCGGTCTCAGTCC	alt_5083_reverse	75	34	91	104	46	80	39	98	38	72
TCGTAGTTCAATTGGC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTTCATTCGTAAT	alt_5083_reverse	15	6	27	24	5	17	5	20	13	12
CAGGTATCTGAGCAGA	alt_5083_reverse	37	21	44	44	17	30	7	41	22	43
TTTCAACTTACCCCAA	alt_5083_reverse	0	0	0	0	0	0	1	0	1	0
CAAGTTTTTGGTAGAT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTCACCCCCTGCA	alt_5083_reverse	60	26	82	77	22	62	19	59	30	51
GCAGATCCAGCTCTCC	alt_5083_reverse	158	49	195	159	55	128	46	112	45	123
CCAGAGTTTCCTACTC	alt_5083_reverse	127	51	147	160	50	135	63	123	57	114
AATTATCTCTCCAACA	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CATTACTGTGATTTGG	alt_5083_reverse	35	8	23	25	7	25	8	19	19	23
AACTAGGGAGTGTACC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCTCATTCGAAAT	alt_5083_reverse	228	86	259	213	78	198	68	175	74	169
TCCCCTGATGTCCCCC	alt_5083_reverse	155	63	186	195	51	166	41	159	51	135
GGTTTCACGCATGAAG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GAGGAGTATAAATAAG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
AGGGAGTGCAGGCTTC	alt_5083_reverse	64	14	86	46	17	53	14	62	13	41
GCGGCCGTTTAGACCT	alt_5083_reverse	59	26	74	73	20	67	21	58	20	59
GTATTGGGTTGTAAGC	alt_5083_reverse	137	44	176	153	50	135	58	122	54	128
GTAGATGCCTTTACGT	alt_5083_reverse	63	23	79	86	33	80	25	70	25	62
TCCGCACAAGCATGTG	alt_5083_reverse	92	54	121	98	46	90	57	90	48	100
GCATTTTCTGTTGTAT	alt_5083_reverse	773	249	967	865	301	770	332	746	244	741
GGGAGGTGTTTAACGG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTGTCACATTCT	alt_5083_reverse	155	63	185	204	67	160	66	170	52	165
AGATTACCCCGGGTCT	alt_5083_reverse	171	64	244	187	100	196	90	189	79	187
TTTTTGTTTGGGTCTT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TTAATACCTGGCTTGC	alt_5083_reverse	58	17	75	73	24	57	25	45	27	26
CGTCTATTAATCGTAC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCATAATGTTTGT	alt_5083_reverse	1	0	3	0	0	0	0	1	3	0
TAAGCTAAGGGTATCG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGCTCAACAAAGT	alt_5083_reverse	5	3	14	12	4	9	2	15	3	10
TTGACGATTATAGAAT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGCGACCTCTTTC	alt_5083_reverse	482	183	630	569	176	525	178	509	198	458
TACGATTGATGGAGTC	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GATATGCTAAAATAAT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGGGTTCTAAAAC	alt_5083_reverse	65	16	71	60	17	53	29	56	15	47
TTAATCTTCTGCTCCT	alt_5083_reverse	1055	298	1248	1125	319	913	337	959	318	899
GTGCTAATTTCCCCGT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGATTTTTGTAAA	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
GTGAAGCTATAGTTCT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CGTATTGTTATAAAGA	alt_5083_reverse	70	20	60	61	22	52	12	47	22	45
CTTAGGGTGGCCTGGG	alt_5083_reverse	305	108	432	371	118	321	122	353	130	295
TTCATACTTTTTTTCT	alt_5083_reverse	119	41	130	125	33	100	35	124	35	109
ACGGTGCTACCATCAA	alt_5083_reverse	71	18	73	75	24	75	25	71	25	73
TTGGGCAAATCGCTAT	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
AAGGCCGTTCGTAACC	alt_5083_reverse	18	13	26	29	12	23	10	25	13	21
GGATGTCTATCGAGGG	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGCCTGCTATATA	alt_5083_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGTAATTATTGGA	alt_5083_reverse	19	3	17	16	3	20	4	18	5	17
GGTCTCGTTCCCACTC	alt_5083_reverse	36	26	60	55	21	57	20	44	27	47
CGCGGAGATGACGTGT	alt_5083_reverse	82	25	84	73	37	84	42	61	45	67
TTATAAGGCTTTTACC	alt_292_RC	6	7	18	18	19	13	14	10	11	9
TAATTTCATTGCCTTT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TGCGGTGTCCCCACCT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TTTCAAGTATCAATGT	alt_292_RC	6	13	6	6	3	2	6	10	4	3
GCTAAGAGAGTGACGT	alt_292_RC	65	39	71	68	52	60	42	55	50	46
CAATTCTTCGCGGGTG	alt_292_RC	21	9	26	23	24	24	22	23	12	15
TATTGGCTATGGTCTC	alt_292_RC	17	13	24	17	11	10	11	10	14	16
ACTTGTCCTGATATTA	alt_292_RC	26	28	40	24	21	22	24	18	34	28
CTGCTAACTTTCATCC	alt_292_RC	14	25	16	13	21	14	20	13	14	14
TGACCGATGCAGTTCG	alt_292_RC	47	40	40	42	38	52	45	45	50	48
CGCCTACCGAGTCGCC	alt_292_RC	24	38	55	41	30	42	24	29	29	26
ACTAATTGTAACCATA	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TTTTTACAACTCGTTA	alt_292_RC	12	19	24	27	23	14	23	13	28	13
TTGATTTAGAGCACTC	alt_292_RC	17	27	34	16	25	23	23	26	25	20
AAGTATAGCATTTGAG	ref_292_RC	72	62	87	77	76	80	78	60	58	69
CCTCGATGTTTCCTCT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
CGGCAGCACCCCCTGC	alt_292_RC	68	63	75	57	58	62	41	47	65	52
GCTGACCTTATCCTTA	alt_292_RC	20	22	16	22	25	21	22	15	17	22
TACATAACTAAAGCTT	ref_292_RC	105	44	121	91	54	99	53	87	61	88
TAGAGACCAATACTTA	alt_292_RC	3	10	11	14	9	10	8	6	12	8
GGTACTTGCCCAACAG	alt_292_RC	23	38	27	25	19	17	40	34	33	24
CCCGGTGATGGCCTTT	alt_292_RC	4	6	4	7	7	8	14	5	11	2
GCCTGGAAGCAAGACC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
ATGTGTTTTTATCGGG	alt_292_RC	101	74	97	100	110	75	108	73	88	70
AAAACGGCGTGTTCAA	alt_292_RC	47	69	82	58	63	55	65	53	63	61
CAAGGAGTTACATTTT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCTCCCCCCTAA	alt_292_RC	35	42	44	49	36	33	40	35	50	45
TGGTGCAAGGCCTTAC	alt_292_RC	5	6	4	11	5	10	6	9	6	12
CGCCCTGTAATGACTC	alt_292_RC	39	23	48	44	18	27	26	25	29	20
TAGCGTAACCGGCATG	alt_292_RC	0	0	0	0	0	0	0	0	0	0
AGGGTAGTCTGCTTAG	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TCCTAGTGGTTACTAT	ref_292_RC	72	26	99	84	30	74	49	52	42	62
ATGATATGTGCGCAGA	alt_292_RC	29	34	36	33	20	26	27	20	25	26
TTATTTCTGAGCTATA	alt_292_RC	35	46	29	51	23	27	21	48	43	36
TGTATGGGAGCGTCAA	alt_292_RC	89	109	98	114	101	104	109	99	117	95
TATCTGTGTGCTTTTA	alt_292_RC	14	16	13	9	22	15	25	16	25	18
GCACGGATCAGTTGGA	alt_292_RC	21	36	23	29	29	35	32	18	40	27
TTGCGCATCGGCACCC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
ACTACGTCAGACTTAA	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTCTATTAAATG	alt_292_RC	34	35	48	42	28	25	35	21	25	33
GGTATCTTGTGTTCCT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TCTCTATTGTAGAAGA	alt_292_RC	33	42	53	41	30	42	43	31	31	41
AACCTGGATACATCCG	alt_292_RC	39	31	36	29	37	33	42	33	35	36
GAGCAACCCTCACGGC	alt_292_RC	23	12	13	6	6	10	5	8	13	9
TACCATAATTGTAAAA	alt_292_RC	48	56	57	66	60	60	54	50	47	55
GATGAATTATACTTTC	alt_292_RC	364	180	383	372	169	339	193	346	164	320
AATAACGTTTCCTATT	alt_292_RC	17	10	9	3	2	5	6	1	14	8
CCGGCGTTCTTGGCCG	alt_292_RC	19	18	30	16	16	20	26	16	34	13
TAGCCGTACCATTCCG	alt_292_RC	0	0	0	0	0	0	0	0	0	0
GGGGAATGCTCTTTAT	alt_292_RC	13	15	17	16	15	13	13	20	10	11
TGTAAGAAGCGATTTA	alt_292_RC	52	53	59	61	61	57	69	54	88	60
TTATACTCATAACACC	alt_292_RC	11	12	7	11	5	12	8	12	18	9
CTTACTTCTACAGCTT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
ATGAACTTGTCTTCCT	alt_292_RC	21	14	27	21	27	20	21	23	12	20
AGCGAACCCTTTATTA	alt_292_RC	65	79	98	67	69	75	99	73	89	70
ACACCTAACTACTACC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TGATGTTTTGTCAATC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
GTCGTGGTGATGTTTC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
AGCTTTCGCCACCTTA	alt_292_RC	45	82	65	60	52	56	66	65	64	45
ACAAGATTGGTTCTCG	alt_292_RC	6	7	15	7	11	1	5	7	4	5
GCTATCTATCTTGTGC	alt_292_RC	7	9	6	11	12	8	8	13	8	16
TGCGAGGCAGCAATAT	alt_292_RC	58	48	77	63	49	64	64	69	56	67
CGGCGACATGGGGGAC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
CTACCCCAGCGTTATC	alt_292_RC	11	8	16	15	9	5	13	11	11	11
CATTTCTGTTTGCAAT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TGAAACGCTATTACGC	alt_292_RC	30	16	38	31	15	22	25	27	19	41
TTGTTACCCGGTATCT	alt_292_RC	23	20	36	21	24	31	23	29	28	15
TAGTCAGCACACCGCC	alt_292_RC	7	13	16	10	11	20	6	13	10	12
GTGCGTCCTATGAAGC	alt_292_RC	8	12	12	9	9	10	5	7	3	8
TCAATTATTTGTTTAT	alt_292_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTGGCCCTAGGA	alt_292_RC	46	27	56	49	47	46	34	50	45	46
CTTCCTGTTCGGGGTG	alt_292_RC	97	58	94	85	56	63	74	77	71	68
ATTAACACGCCCTCCG	alt_292_RC	1	1	4	1	0	2	1	2	1	0
ATTCATTGAATTATAG	alt_292_RC	192	226	225	182	226	191	213	181	243	168
GGTTTTGATTAGATAT	alt_292_RC	33	45	39	27	40	36	44	36	44	36
CGCATGGGCCTGTTCC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TAAAGCCTAGAGTCAC	alt_292_RC	7	4	9	7	4	2	4	3	6	9
GTTGGAGAAATTGGGC	alt_292_RC	26	31	37	27	32	22	33	26	25	33
GGCTACTCTCTATTGA	alt_292_RC	25	24	34	27	17	21	31	22	18	18
TCGATTACTAACTTTA	alt_292_RC	11	12	27	14	16	12	16	24	17	9
TCGACTGTCAAGGTTA	alt_292_RC	30	38	48	39	42	40	35	35	43	25
AGAGCGCGTAGTTCTC	alt_292_RC	5	6	4	7	4	3	4	7	7	3
CGCGTGAAATCTAGCA	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TTGTCGTTTTCGTCCC	alt_292_RC	41	101	63	39	129	40	134	48	145	34
TGGCTCAACTGATCAT	alt_292_RC	5	3	8	6	2	4	5	1	3	2
GCCTCCACGGATAGTC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
CGGCCGTCACAGTAAG	alt_292_RC	100	64	105	102	101	91	103	87	83	68
CAGCTATCGGCTGAGA	alt_292_RC	14	11	18	9	13	11	17	15	11	12
TTGCGATGTATGTCTA	alt_292_RC	0	0	0	0	0	0	0	0	0	0
CACTTGGAGTGCGCTC	ref_292_RC	84	53	110	112	45	70	63	92	85	105
CCTAGCCTTCGATATC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
GCCAAACGCCATTGCG	alt_292_RC	166	231	197	191	200	140	237	168	242	139
AAGGGAGATCCAGGTC	alt_292_RC	0	0	0	0	0	0	0	0	0	0
TACATTCTAGTCGCCC	ref_292_RC	43	45	46	47	45	42	38	47	37	51
ACTTATCCATAGTTGC	alt_292_RC	28	45	42	38	42	34	39	29	29	26
GAGATTCACTTGCACT	alt_292_RC	10	18	15	7	8	6	9	9	12	11
ACACACGTTAATTTCG	alt_292_RC	0	0	0	0	0	0	0	0	0	0
ACAGTACTATCCGGCT	alt_292_RC	23	14	17	20	23	16	25	17	22	17
GTGGTCGCCCCAATAC	alt_292_RC	1	1	1	0	4	2	0	2	2	1
CTGAGAGCCACTTATT	alt_292_RC	13	14	15	15	24	14	23	14	11	10
GGATTTGCCGAACCAA	alt_292_RC	26	16	31	28	24	21	25	18	25	27
ATTAATCTCCGACGAG	alt_292_RC	0	0	0	0	0	0	0	0	0	0
CGAACTGATAGCTGGG	alt_292_RC	0	0	0	0	0	0	0	0	0	0
AATTGCGCGGGACTCA	alt_292_RC	9	6	7	12	12	8	10	8	8	5
TGCTCAAGATTCTCGT	alt_292_RC	31	32	27	36	21	19	17	20	29	27
CTCCACTCAGGCAAAG	alt_292_RC	0	0	0	0	0	0	0	0	0	0
GTACATATGCATTTTC	alt_292_RC	31	34	31	26	28	26	27	28	23	30
TGTCCACTAGACAACC	alt_292_RC	37	39	58	31	54	29	39	32	31	22
TGAGGGCTTTCACTCA	ref_6051_new	22	21	27	15	16	21	22	19	17	20
TAGAATTACCCCGTGT	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TACGCCGGGGGTATGA	ref_6051_new	17	11	14	20	10	13	16	13	16	8
TGAATTGGAAAACTCA	ref_6051_new	16	17	20	11	15	18	13	16	13	8
ATTGCCATTACAGGCC	alt_6051_new	46	42	65	48	51	55	58	53	54	56
GTCTGCTTACAAATTC	ref_6051_new	15	9	14	6	20	7	16	17	19	6
TCCATGCGTCCGGTTG	ref_6051_new	30	41	45	39	41	34	47	36	40	34
CAAGGACTTTGGGTAT	ref_6051_new	31	39	48	45	52	48	44	34	40	30
TGCCGCACCCTGTAAC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
GTATCTTGACATTAGG	ref_6051_new	11	8	13	8	5	8	16	7	10	16
CATCGGCCGTATTCCA	ref_6051_new	17	32	13	18	25	16	28	15	25	17
CGTCGTCGGCATAAAC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TTTAAGCTTATTGATT	ref_6051_new	58	40	43	40	49	43	50	50	53	47
CCTGCTAACTCGCTTA	ref_6051_new	7	8	8	6	2	7	10	5	3	9
GCTTTTGTGACCCCTT	ref_6051_new	0	0	0	0	1	0	0	0	0	1
TAAGCCCCCCTGCGGC	ref_6051_new	42	39	36	43	44	35	54	43	48	33
CATTGGTGTCTCCCGG	ref_6051_new	9	7	13	6	7	8	13	7	9	9
CAGGTACAGTCTATTA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TTAAGTATTACTTTAG	alt_6051_new	87	123	106	123	102	95	121	100	128	93
GTTGGGGTTTAACATA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
AAATAGAATGGCAAAG	alt_6051_new	50	76	50	36	57	49	54	51	55	60
GATATTACTGCCTGTC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
GACGGCTGGATACGAT	ref_6051_new	5	6	13	10	6	7	8	3	4	6
ATACGCGGCGTTGCGT	ref_6051_new	5	15	12	11	10	6	4	9	12	11
ATTTCTGCCCAGAGGC	ref_6051_new	23	27	29	31	42	28	34	29	41	30
TTCGAGCCTAAGCACG	ref_6051_new	50	48	58	41	53	44	48	41	51	32
GGCACCCACTGTGGGC	ref_6051_new	8	21	15	11	26	21	32	14	13	17
TTAGACGGTAAGTGGG	ref_6051_new	0	0	0	0	0	0	0	0	0	0
GAACTTTGTCACGTTA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TACTGCAGCCTCTAGA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
ATCGTTATGTTTGAGC	ref_6051_new	0	9	1	5	5	1	6	4	6	2
GGTTTGGATGGGGGTC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TCTCTATACGCGGTAC	alt_6051_new	59	95	93	85	84	77	69	69	95	69
TGGGAAGCACCGCTGA	alt_6051_new	72	57	87	83	45	75	81	63	90	63
CCGATTTCCGACCGGT	ref_6051_new	8	16	17	21	33	14	23	13	29	14
TAGCACTTGTACATGA	ref_6051_new	36	31	45	39	54	31	53	46	38	26
CCTTACTTCTCCTCGA	ref_6051_new	3	8	2	3	6	6	3	3	1	3
TCAAACGTAGACATCA	ref_6051_new	17	36	24	29	29	13	32	25	20	27
CACTGTTCTTATGTTC	ref_6051_new	12	18	12	8	20	5	14	8	13	17
CAGAGGCGGACTCGTA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
ATTTCATTACGAATGC	ref_6051_new	48	42	42	39	34	36	42	41	32	36
TTTGGCAGAACAGGTA	ref_6051_new	16	18	24	14	10	13	22	10	19	10
GGGCAGTCTTTATTCA	ref_6051_new	6	5	12	5	15	7	9	7	7	5
ATTACTTTCTCGCGAA	ref_6051_new	47	44	56	37	48	33	46	47	53	30
AGTTTACTCAGCCTAT	ref_6051_new	0	0	0	0	0	0	0	0	0	0
GCCGGGACGGCCCGTC	ref_6051_new	88	118	94	96	94	99	82	86	99	102
GGGGAATCGTGTTCCT	ref_6051_new	4	13	26	20	10	7	18	7	13	15
AGTTGGACGTGTAATA	ref_6051_new	15	18	19	32	23	24	35	20	32	10
ATTTATGAGTCGTATC	ref_6051_new	3	1	10	3	5	4	2	3	1	9
TCCATTCAGCGATGTT	ref_6051_new	26	23	43	32	19	24	26	25	21	18
CATTAGTCTCATTACC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TCCGACTCTTCGCATT	ref_6051_new	0	0	0	0	0	0	0	0	0	0
ATCAATGGCACGTCTT	ref_6051_new	31	25	30	33	31	33	31	20	31	30
AGTCCTTAAACGAACC	ref_6051_new	15	17	10	13	9	17	11	10	14	8
AGGCACTGCTTGCCAT	ref_6051_new	12	14	12	11	17	20	14	7	20	15
ATTAATCCTACTACCC	ref_6051_new	42	46	47	34	42	22	52	36	39	47
TATAGTTGAGCAATCT	ref_6051_new	39	53	62	39	46	39	40	41	52	27
TTAAGGAGTAGGTATA	ref_6051_new	10	12	13	8	14	6	12	10	6	16
GTCACATGCGATCCCA	ref_6051_new	15	10	17	18	15	16	14	14	18	17
GTAGTGAACTTGAAGT	ref_6051_new	6	5	2	3	11	2	13	1	6	4
CACCTGTTAGTATGAT	ref_6051_new	2	7	4	3	2	6	5	6	2	3
ATTTTGCTTGCTCGGC	ref_6051_new	8	3	0	5	3	5	0	1	5	4
TGCTAGCGGCGACACT	ref_6051_new	24	22	24	27	22	18	15	18	26	23
AACTCCGCTCGTATTC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
ATACCGCTGCACGTCA	ref_6051_new	30	38	30	38	46	30	33	28	39	28
CGAGATGGTCAGCCTA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TAATGTGACGGGGTTA	alt_6051_new	51	46	42	41	48	33	44	34	37	37
TTTTTTGTATGTCCTG	ref_6051_new	30	28	24	14	30	30	27	16	29	20
TTGCAGCACTCGGACT	ref_6051_new	0	0	0	0	0	0	0	0	0	0
GCGTGAGTTCTTACAT	ref_6051_new	54	57	65	60	68	55	57	46	40	53
CTGTTATTGTGTTGCC	ref_6051_new	22	26	24	18	23	17	23	25	29	18
GATATACTTTCTTACA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
CGCCACTCGGCCTTTG	ref_6051_new	22	32	16	22	44	26	36	18	34	16
CGTTCGTCGTATTCTG	ref_6051_new	0	0	0	0	0	0	0	0	0	0
GAACGGAGTACCACCA	alt_6051_new	45	43	48	35	41	49	49	44	60	20
CGAGGCCTTGCTTCGT	ref_6051_new	4	15	16	8	17	16	10	13	13	4
TTTCTGGTTTATATGG	ref_6051_new	8	7	9	6	18	7	4	11	7	3
ACGTACAAGTGGTCAT	ref_6051_new	48	40	45	62	42	39	39	32	55	43
GAATAAGTAGCTTGTG	ref_6051_new	119	101	129	95	140	106	138	112	128	120
CGCTTGCTGCTACTGA	ref_6051_new	24	43	49	35	47	37	58	24	39	48
AGGCATATACTGCTCG	ref_6051_new	63	49	60	59	69	53	66	47	62	47
ACTTAGACGCGGAATG	ref_6051_new	0	0	0	0	0	0	0	0	0	0
CCCATGAGCTTTGTTG	ref_6051_new	0	0	0	0	0	0	0	0	0	0
GCTTTGGCTGGGTATG	ref_6051_new	79	73	80	81	98	76	93	80	117	74
GTAGATCTCTAGAACA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
ATCGTGTGCGCCATTG	ref_6051_new	0	0	0	0	0	0	0	0	0	0
CTGTGGAGGACGCCTA	ref_6051_new	1	3	0	1	3	3	3	3	6	2
TTCCATTGGAACTGTC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TCTCCCCTGTGTCATG	ref_6051_new	14	47	10	12	51	18	42	8	42	8
GTCGGTACCAAATTCG	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TTATCGTATGTGGTAG	ref_6051_new	2	7	6	2	1	9	9	3	6	5
TTTATTATCATTTGCC	ref_6051_new	20	21	34	16	15	16	26	10	27	11
ATACTTTCGCCCTATT	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TAGCGTCCTGGAGATT	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TAAAGCCACGTCCTTC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TGCTCCTCCTCAAGAC	ref_6051_new	11	22	22	17	14	28	12	29	24	29
AAGCGTGTTGACCTGA	alt_6051_new	26	23	32	18	30	28	34	35	28	29
CCCGATGACCTTGGAT	ref_6051_new	19	43	21	31	72	27	77	17	54	22
GGCTGACACTCAAAGA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TGCTAGGCAGGCCCGG	ref_6051_new	7	5	12	8	4	4	3	6	8	6
TAATTACGTCTGGGGT	ref_6051_new	61	40	65	64	61	46	46	51	57	59
CAGACTGGAACATCTG	ref_6051_new	5	6	4	1	5	4	8	8	4	5
AGGTTTATGCTACTCT	ref_6051_new	37	46	50	29	59	36	45	28	43	30
AGGCATTTTTTATTCA	ref_6051_new	21	23	30	18	32	21	31	21	24	14
CCTTGTATCTACCAGC	ref_6051_new	42	34	32	20	40	39	45	25	37	35
GCCGAATAGCATTTTG	ref_6051_new	25	17	16	17	15	16	9	14	12	7
CATTCTGGGGCAAGTG	ref_6051_new	54	52	56	41	59	47	41	39	52	44
CTACGGTGCTGCATCA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
ACCCTTGTTTCATGAC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
CACTCAGGCGGCCGTA	ref_6051_new	26	18	19	8	22	14	28	18	22	16
CCCTAATATCCTGCCT	ref_6051_new	0	0	0	0	0	0	0	0	0	0
ACCGTTCGCGTCACGA	alt_6051_new	33	37	39	32	44	40	36	41	49	27
GGTGTTCCTATCGAGA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
AGTCCCTGTTTATAAG	ref_6051_new	17	5	14	15	17	9	20	7	20	14
GTACAACGTGACAATC	ref_6051_new	35	32	37	29	24	28	49	35	37	26
CTCAAACAACGATAGG	ref_6051_new	21	30	30	34	40	25	49	27	49	27
ATCTTGTGGTTCGCTC	ref_6051_new	27	38	24	19	38	15	38	22	44	22
CTTGCTTCCCGCGCCC	ref_6051_new	0	0	0	0	0	0	0	0	0	0
TCTCTATCAGAGAATC	ref_6051_new	7	5	6	6	6	3	11	4	4	4
TTAATAAGCGTTGTAC	ref_6051_new	61	57	68	46	51	50	70	42	52	35
CGTCCGTCTCATAGTA	ref_6051_new	9	11	9	5	7	6	16	8	16	8
AGGTGCCAGGCCCGCG	ref_6051_new	7	9	5	4	3	6	6	4	8	5
TTCCAGGGCGTCCGCG	ref_6051_new	75	64	106	94	89	108	102	102	114	80
GCATGCCTATCATTAT	ref_6051_new	118	132	150	147	114	121	150	123	149	114
CTTGCTTCTGATGTTT	ref_6051_new	130	129	137	151	114	121	131	118	127	102
GAAAGGGGGTCGCTTC	ref_6051_new	8	7	15	1	2	1	5	7	6	1
ATACTCTGCACCCTGG	ref_6051_new	25	32	34	21	28	19	31	21	27	15
CGCTAGCTTGACCGGT	ref_6051_new	34	45	46	29	41	40	44	45	41	21
CCGGATTTCTTGCTAT	ref_6051_new	14	9	14	10	9	14	11	12	11	13
TTGCTGATAGGACTTC	ref_6051_new	53	55	59	62	51	64	59	45	46	38
TTCCTTGGCTTTAATA	ref_6051_new	5	5	8	6	5	1	7	7	5	5
TGCCTGTCAAGGCTCC	ref_6051_new	9	8	9	8	13	6	4	3	5	6
GCCCTCTCAGGGCATC	ref_6051_new	6	3	6	2	6	5	7	3	4	3
GTGGCGTGCAACTATC	ref_6051_new	59	53	51	66	67	45	59	65	54	49
CTGCGTCTGCCGACAG	ref_6051_new	9	16	20	16	21	11	21	20	30	22
GCTGTACTCGCATAGG	ref_6051_new	0	0	0	0	0	0	0	0	0	0
CTTGGTGATCGTACGA	ref_6051_new	25	31	35	25	24	12	22	12	27	15
TCCTTTGGGCCGACTA	ref_6051_new	56	45	46	26	51	33	40	34	52	56
GAGGGACCCCACATGA	ref_6051_new	14	12	18	11	19	24	15	18	12	11
AAATTCCGTGTTGCAG	ref_6051_new	15	12	14	18	12	5	12	15	20	10
GCTTCACCTCCTACTA	ref_6051_new	15	19	10	17	11	6	17	15	15	5
ACTATCGGCGCTAAAG	ref_6051_new	63	66	73	57	66	51	69	68	85	51
GGGTAGAGTGTGTCCA	ref_6051_new	0	0	0	0	0	0	0	0	0	0
AGCGTGGCTTTTCGGA	alt_6051_new	143	145	153	167	121	133	112	131	118	122
TTCGTTGCCTTACCTT	ref_2378_upstream	66	72	78	59	70	46	76	75	92	33
CTTCTTTCCGCGTTTT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGCGCTTTAGTCA	ref_2378_upstream	152	35	232	184	70	173	55	148	74	129
TGAACTTATAAATTAG	ref_2378_upstream	158	88	169	138	71	172	68	150	93	152
CGGCGATCCTGGTGTA	ref_2378_upstream	221	91	212	213	106	163	90	192	95	167
TCCTGCCTATCGCTCC	ref_2378_upstream	55	31	87	75	30	70	46	64	43	60
GCTGTGTAGAGCATTA	ref_2378_upstream	93	32	129	87	41	88	39	82	45	75
CATTTTGGGTTTACGT	ref_2378_upstream	382	150	458	380	123	317	131	315	125	348
GTCTGCCCTTAGTAGA	ref_2378_upstream	56	17	58	45	23	34	21	45	15	49
CATTATTGAAACAGGT	ref_2378_upstream	33	15	36	37	13	28	16	36	8	27
TTATTGCGGGCGCTAC	ref_2378_upstream	289	122	336	334	126	282	107	240	128	253
CGCTGTGCCCGCTCAG	ref_2378_upstream	74	28	108	84	21	88	32	70	35	52
TAAGTCTCATACATGG	ref_2378_upstream	8	8	24	13	8	25	7	21	6	21
TTTTAAAGATTCTGTC	ref_2378_upstream	924	304	1115	977	300	856	300	900	304	787
AGACGAGTTCCGTACA	ref_2378_upstream	111	31	146	128	51	101	29	115	29	115
CAATTATTGGAAAATA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CGAATTGATCAAGATG	ref_2378_upstream	31	10	31	20	8	24	11	33	12	31
TTAACTTCGGATTCTG	ref_2378_upstream	195	60	253	229	83	210	79	227	86	197
CGTTTATGGGTGCTCA	ref_2378_upstream	23	10	44	37	7	22	13	30	6	24
TCTCAGTCACAACCGT	ref_2378_upstream	35	15	36	30	5	17	14	29	12	20
CCATTTCAAGTGTGAG	ref_2378_upstream	80	24	77	70	31	41	41	57	23	45
CAGCTGAGGTCCTCGA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CTAACGGAGCTAGCCC	ref_2378_upstream	2	1	11	9	1	5	0	5	0	5
ATCCCCTCTTTAAACA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCCCTCTGTTTTA	ref_2378_upstream	911	327	1114	1038	322	762	342	856	336	827
CCTCCGTTACCCTTAT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TAATTAGATGGTAAGC	ref_2378_upstream	90	29	116	109	27	76	40	86	31	61
TCTTGATTGTGAGCTG	ref_2378_upstream	1196	411	1489	1263	407	1161	433	1127	431	997
GGTTGTAGGATTATAG	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGTTCTAAATAAG	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGGAAGTCCATAG	ref_2378_upstream	141	82	191	172	49	153	65	134	62	129
TCCGACGTGAAGTGCA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TATTGAATGCTATATC	ref_2378_upstream	28	8	31	18	3	29	9	17	6	27
CAGTGCCTGGGCCTAA	ref_2378_upstream	39	10	65	54	18	42	18	42	10	37
TGCGTGACAACAAGGG	ref_2378_upstream	67	23	83	51	28	60	18	65	27	63
TTCGCCTGAACAGGGC	ref_2378_upstream	57	7	54	33	13	29	9	42	10	34
CCGGAGCTTAGATGTT	ref_2378_upstream	1	1	10	6	1	2	7	7	8	8
AATTCGCATGCCAAGG	ref_2378_upstream	449	138	525	518	137	409	130	467	207	402
CCACTCGAAATAGTCC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CTCCAGTGATTTTATC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TATATTTCAGGGGTGC	ref_2378_upstream	20	4	13	19	4	26	8	34	4	22
ACCCTTACTCAAGATA	ref_2378_upstream	57	35	92	87	25	59	30	52	28	48
CTTATCATATTTCATT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCGGCGGTGTTTT	ref_2378_upstream	199	54	247	199	61	172	70	166	57	174
GGCGTTGTACTGGGCC	ref_2378_upstream	109	50	131	119	50	71	42	80	53	87
CGCTGCCATCCGGTTA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
AATTGTGGTCGAGATG	ref_2378_upstream	74	44	112	108	35	88	36	78	61	72
TCTATATAACCAGTCC	ref_2378_upstream	61	20	63	60	15	53	19	61	26	45
GAGGGCAGTAAGCTCG	ref_2378_upstream	42	17	77	73	24	64	27	72	34	67
GTTGGCATCACGGTAT	ref_2378_upstream	53	20	80	78	12	43	24	46	25	47
ATAGCCATCAATTCTG	ref_2378_upstream	81	35	95	94	35	81	51	87	43	83
TCGTGGTATAGCACAT	ref_2378_upstream	106	44	119	113	45	108	48	110	46	80
TGTACTGGTCTACTTG	ref_2378_upstream	143	42	152	105	59	99	54	117	47	118
CGAGCTGGTATTAATT	ref_2378_upstream	95	49	123	101	31	96	37	84	45	92
GGCTCGCCAGGCAGAG	ref_2378_upstream	225	92	288	272	84	223	77	233	87	201
CTGATGTTGATATGCA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGCTCGTTGCGCT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCATGATAGAAGC	ref_2378_upstream	46	21	51	66	21	59	11	49	17	38
GTGGCGCTTGTCCGCC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
GATGGCAATTCGTCTA	ref_2378_upstream	64	13	75	51	19	55	19	41	16	41
CATAAAGAGCTAACAA	ref_2378_upstream	28	3	34	25	6	20	6	34	10	23
TTCACGACTCACTCGT	ref_2378_upstream	106	54	171	117	50	97	49	106	65	109
GCACACACGACTAGAT	ref_2378_upstream	47	9	47	55	10	36	16	35	27	47
ATTCGAACAGACAACT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
ACTATCGCTCTCGGTT	ref_2378_upstream	34	15	51	35	8	34	17	36	14	43
GTTATTTTTGTCATAT	ref_2378_upstream	55	26	80	76	34	69	41	73	37	49
GCGGCCATTGTGCTTG	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCCGGATTTCTGG	ref_2378_upstream	122	44	139	120	33	106	56	122	46	93
AGTGCCGTTACTTTTA	ref_2378_upstream	157	69	183	157	58	132	60	145	62	129
GCCCCCAAGTTCTTTG	ref_2378_upstream	172	72	231	208	81	184	76	159	51	134
GTATATTAGGTAGCTG	ref_2378_upstream	100	29	136	130	33	84	43	97	39	90
CTTTCTAACAAACATT	ref_2378_upstream	263	97	352	321	93	233	100	287	85	235
CGCGTTTTTCGCGACA	ref_2378_upstream	163	63	161	172	40	148	59	94	44	124
GTCACTAAAGGTATTT	ref_2378_upstream	141	57	180	186	64	166	68	169	62	142
CATAAATAGCCTCCGT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
AGAAAACACCCTTATT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTTCCTTCAGCTT	ref_2378_upstream	44	9	40	47	16	46	13	44	9	31
ATAGCTATCTAACTTT	ref_2378_upstream	275	102	331	308	112	265	96	258	106	238
ATCAAGTCACAGACGA	ref_2378_upstream	87	25	97	91	38	71	38	81	42	71
ATCGTGTAGTCTTTTA	ref_2378_upstream	138	44	182	150	51	163	71	167	70	120
GGGATGATTACAGAGT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGACAAACCAGCG	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TTCATGACTGTCCAAG	ref_2378_upstream	236	88	282	259	88	260	102	222	103	215
GCTCCTAACCCGCTTC	ref_2378_upstream	188	66	251	211	70	189	58	178	74	196
ACTACTTACTCTATTC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TTATAGAGCCTTATAA	ref_2378_upstream	67	29	93	80	21	78	20	64	33	66
ACCTATAATCGGTTAT	ref_2378_upstream	36	13	40	43	13	48	12	34	22	24
TGCGTTTTGGCCTGTG	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCGGATACTTGAT	ref_2378_upstream	32	54	44	47	48	34	58	33	65	36
AGTTTATCATTTGCGT	ref_2378_upstream	54	29	71	67	24	63	28	44	31	50
ATCATCTGGTGTTCAC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCCTAACAATTTA	ref_2378_upstream	37	12	50	47	16	31	23	49	10	26
TTTACTTATGTTTCCT	ref_2378_upstream	100	31	103	111	39	68	31	102	29	101
GGCGTGCCTTATGCAA	ref_2378_upstream	147	71	203	187	84	152	61	151	75	124
CCTACCTTGTTTAGTG	ref_2378_upstream	74	31	87	90	46	75	48	80	46	58
TCAATCAGTCCTATGC	ref_2378_upstream	325	125	457	388	146	348	120	351	149	287
CATTGCCATTCGGATA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCGTCCTGCCTGC	ref_2378_upstream	17	7	24	25	10	13	3	18	2	13
TACGTCGCGCCAAAGC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CCCGGTCACAGTGTTG	ref_2378_upstream	0	1	0	0	0	0	2	0	0	0
TCGCGGCGCACTTAGT	ref_2378_upstream	123	69	139	111	64	109	75	102	77	91
ATATCAGAGCCAGTCA	ref_2378_upstream	48	41	54	51	44	52	64	37	52	54
TCATGAACATGTCAAG	ref_2378_upstream	100	29	123	94	14	74	31	82	44	81
CCTTGCGTGTCTAAAG	ref_2378_upstream	1	4	2	2	0	3	0	0	1	2
GAGCCGATTAAAACGC	ref_2378_upstream	109	50	137	124	47	104	47	90	48	89
GTTAGAGATTTGAGTA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTGGCTCGTAAA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
AATTCGCATTCCAAGG	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTGCTCTCATTT	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
CGCACGTGATTTAGCA	ref_2378_upstream	213	75	233	197	72	210	79	208	79	179
TGTATCATTATTCGTC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGTTTACACCAGT	ref_2378_upstream	59	20	66	51	25	47	19	45	27	49
ACCAACATATCTTATA	ref_2378_upstream	187	85	293	262	89	219	101	250	115	219
ACGGGCTCTTTTCTTT	ref_2378_upstream	37	15	31	43	9	40	9	38	17	28
GATACAATGTGAAAGC	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTAGAAGGCACTA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
ACTAATCGCGTTTTGT	ref_2378_upstream	40	18	44	28	11	23	15	34	12	32
CGCCTCCAGCCCATTT	ref_2378_upstream	14	4	17	20	4	12	8	10	7	17
GGCTTAGCCATGTAGT	ref_2378_upstream	65	26	88	67	29	59	17	64	40	51
CGACAGCATCTACGCC	ref_2378_upstream	41	9	32	32	17	32	17	31	18	44
GGCACATTTAATCCGA	ref_2378_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCGTATAAGGGGT	ref_2378_upstream	107	25	109	87	39	91	25	76	30	84
GACCTGTGCTGCTTCA	ref_2378_upstream	101	44	145	128	38	108	47	112	35	88
TGCTTCAGATCACGTG	ref_2378_upstream	67	27	89	89	31	81	41	76	36	70
CCATCCCTCTGGAGTG	ref_2378_upstream	23	17	44	32	10	23	15	23	17	25
TCTCTAAATTATTACC	ref_2378_upstream	6	3	8	15	4	9	4	15	5	2
TTGGTCTGATGGCTTT	ref_2378_upstream	35	10	31	23	14	27	7	31	15	38
CTTTGTTAAGAAGCGT	ref_2378_upstream	102	32	106	106	35	95	40	83	41	86
AACGCATTGCCTCTGT	ref_2378_upstream	21	9	27	27	13	23	12	24	9	20
AAACAGTGTCGTGGCT	ref_2009_fdr	42	76	83	57	71	62	78	61	77	45
CTTGTACATTTTGATG	ref_2009_fdr	12	13	5	11	3	5	13	9	11	12
ACCATAGCGATTTTCC	ref_2009_fdr	99	83	116	114	77	74	98	91	109	76
TCTAGTTCTCGTCGCA	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCAGCCTACTTGT	ref_2009_fdr	28	49	29	30	53	34	35	33	45	26
AGGGCTGCCCTTTACT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CGACACACTGACTAGG	ref_2009_fdr	141	163	178	171	158	163	140	121	165	156
TTCCTCATGTTCGGAT	ref_2009_fdr	32	26	30	11	32	31	21	23	10	19
GCTGCGTTTATTTCTC	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTCGTTGTAACAG	ref_2009_fdr	28	29	19	18	23	26	32	23	34	18
TACATATCGTGCCAAC	ref_2009_fdr	38	50	37	32	50	39	45	37	39	41
GGATCCCGCCCGACCG	ref_2009_fdr	54	83	84	76	101	64	86	68	102	60
GTAAAGGAGATTTCCT	ref_2009_fdr	27	35	43	35	36	25	34	34	39	26
GCGGGTATCCACCGTA	ref_2009_fdr	42	35	48	47	25	24	34	30	39	24
GCAAAAATCAGAGCGA	ref_2009_fdr	34	38	52	44	36	36	46	22	45	39
GCGCTTAGCCAGTTGA	ref_2009_fdr	13	10	8	11	8	7	12	13	13	3
CTGGTGAAGCGGTCGA	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
AGGAGGCTATTGGGAT	ref_2009_fdr	29	15	32	34	26	24	34	18	34	18
GATGCCTGTGAAGCTG	ref_2009_fdr	45	48	62	52	60	61	63	28	62	53
CGGATGGTTGCCTCTA	ref_2009_fdr	58	70	80	54	46	51	71	67	77	80
TATGACTGAATGCGGC	ref_2009_fdr	19	18	34	15	19	15	21	11	25	11
CTATATTGCATTTATG	ref_2009_fdr	4	3	3	2	1	1	3	0	3	1
ATCAGTACAAATCTTG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTTGAACCCCTTTGAA	ref_2009_fdr	26	28	29	26	32	20	29	25	17	19
AGTACTATCAAGTTTC	ref_2009_fdr	47	36	43	34	48	35	51	38	54	28
GCGGGGTATTATCGTC	ref_2009_fdr	9	5	5	3	3	7	3	7	7	6
GACTTGACCACCTGCC	ref_2009_fdr	25	53	37	24	39	27	42	24	46	29
ATCCGCCGATTTGCTT	ref_2009_fdr	66	52	77	63	76	63	69	57	80	60
TCCAGACCTCGCCAGT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCATTGACGCAGC	ref_2009_fdr	9	17	16	10	20	14	18	15	9	13
ATTTTGCGGCTGTCTC	ref_2009_fdr	12	7	6	4	4	4	7	10	12	7
AATCTTGAGAGACGCT	ref_2009_fdr	109	71	137	86	114	78	80	73	89	91
CTGGCTCGTCATCAAC	ref_2009_fdr	36	26	50	36	36	37	35	29	33	30
TTCATCGGATGTCACC	ref_2009_fdr	37	43	48	43	39	40	28	46	45	25
GATTCTACGCCCTTTC	ref_2009_fdr	27	54	36	40	35	47	39	34	29	24
GTTTTTACGAGGTCCT	ref_2009_fdr	58	63	71	61	52	43	49	54	53	51
AATTCCACATTCGGAG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTATTTGCGAAG	ref_2009_fdr	24	19	31	34	30	23	27	27	29	26
TGCATGGTCTAGATTT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCATTGTTATGGA	ref_2009_fdr	50	49	83	75	63	45	64	64	51	50
AAATCGCAGCTGACTA	ref_2009_fdr	3	4	3	3	2	3	6	0	2	2
TCCAGGTTGGGCGAAT	ref_2009_fdr	6	5	8	4	18	13	9	4	10	6
GCTCCAGTTCCCTTAT	ref_2009_fdr	93	102	106	86	109	99	96	92	106	95
AATGCGCCTCATACTT	ref_2009_fdr	6	7	10	8	6	8	6	8	9	7
TGGGAGTTATGCTTTG	ref_2009_fdr	6	2	13	2	5	7	3	9	4	2
TTCGATGGCTCACAGC	ref_2009_fdr	27	15	28	18	27	16	32	17	14	16
AGTGCTACTTGTTAAT	ref_2009_fdr	47	37	33	46	54	34	43	28	49	40
CGAACGTACTGGTGTT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGGGCGTTTACTG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
GTAGTCCAACCGTAGT	ref_2009_fdr	12	9	13	7	14	11	18	9	15	4
GCCACTTCTAGAAGCC	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TCACACTCCATCAAAT	ref_2009_fdr	0	3	0	1	0	2	1	0	1	0
CTGCCTGATCTTGCGT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TGCCATGCCTAACATC	ref_2009_fdr	41	36	42	25	26	27	12	33	35	33
GGTACTATTGCGTGTA	ref_2009_fdr	9	11	9	1	5	9	12	10	10	2
TTAGACAGGGGGCTGA	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CTAGAGGTATGAGCCA	ref_2009_fdr	24	23	33	22	19	23	22	18	26	24
AAGTTTTAATTTTCCA	ref_2009_fdr	63	71	74	67	65	62	69	49	53	48
TTCAGTTTCTAACCCC	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTTGGGTCACTA	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTTCCAGTCAAGG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTAGTTCTGACGG	ref_2009_fdr	25	32	31	27	28	24	35	15	27	14
TTATTGGGTATCTGGC	ref_2009_fdr	51	60	70	57	87	58	74	48	65	61
TCTAATCGTTTTGGTC	ref_2009_fdr	7	10	15	12	18	17	15	10	13	15
TATGAATCCTCGGCTC	ref_2009_fdr	15	13	20	18	15	14	14	12	21	24
TTCCTGCCTGCCTTTC	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CATGCGTCTCTATATG	ref_2009_fdr	1	8	3	3	3	6	7	3	10	4
TTAGATTTGTTCATCA	ref_2009_fdr	92	112	140	111	103	92	91	92	103	93
AGGGATTCTGTATTTA	ref_2009_fdr	24	20	30	19	24	31	23	23	30	25
TTGGGGTTGGAAGGGA	ref_2009_fdr	20	31	29	21	17	22	17	15	32	13
GGCTTTGAATTTGGTT	ref_2009_fdr	51	41	54	36	62	50	55	36	43	28
CGTCAAGTCACGGCTA	ref_2009_fdr	108	104	131	94	118	91	138	97	125	88
CAGAATACGTTATATT	ref_2009_fdr	28	27	29	33	36	21	27	23	29	19
CTTACCCCGGTCGGAT	ref_2009_fdr	2	6	1	1	7	2	11	5	11	4
AAAATTGCGAGATATG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TAACTTCGCTAATTGT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGAATAATGAGTC	ref_2009_fdr	26	27	27	43	33	25	38	24	34	21
GTAACAGATCGAGCCG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTCGGTCCCTTC	ref_2009_fdr	7	9	18	13	15	13	14	11	18	11
ACATCGCCTTGGAAGC	ref_2009_fdr	59	93	78	71	82	62	92	54	105	57
TCAACGCCTTTGGTAT	ref_2009_fdr	21	23	18	22	26	16	13	14	28	23
TTCCAACTTTTGACTT	ref_2009_fdr	8	12	30	21	13	13	7	12	9	16
GGGCTTTGGGCAATGG	ref_2009_fdr	1	3	1	3	2	4	0	2	0	0
GCAGGCCTGTCCCTCG	ref_2009_fdr	160	156	195	174	178	148	175	134	183	127
CGCTCTCATATTCAGT	ref_2009_fdr	6	11	14	8	7	7	7	5	6	3
TTTTGTTTTACTTCTT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCCTTATGGCGGT	ref_2009_fdr	66	81	68	69	85	60	66	63	68	69
TCTGGACTAATGTTTA	ref_2009_fdr	14	11	15	6	24	12	13	7	15	16
TGTCGTAGGTAACCCA	ref_2009_fdr	197	186	216	217	207	168	224	179	207	206
AATGATGCCATCTATT	ref_2009_fdr	21	22	26	22	24	19	27	17	32	22
ATTATATGTAATATCT	ref_2009_fdr	88	80	103	120	98	89	108	121	132	100
TCGGACGACACACGCT	ref_2009_fdr	22	13	29	18	12	13	15	17	13	14
TGATTGCTTTAGGACG	ref_2009_fdr	130	139	174	134	156	127	163	136	162	111
GCTAGTAGGTTCTCGT	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CATGTGCATGACTACT	ref_2009_fdr	26	40	26	23	25	14	25	24	25	11
CTGCCCTCTGACTGAA	ref_2009_fdr	22	27	37	35	43	24	40	21	47	28
ATTCATGCAATTTCGG	ref_2009_fdr	56	74	108	78	89	81	103	73	84	61
GCTGTCGTATACCTAG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
GCCGATTGTTTCTACC	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CACCTGTGCACAGATC	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTTGCACAATCT	ref_2009_fdr	29	29	43	30	23	25	26	20	28	27
AGTGCCAGGTGCGGAG	ref_2009_fdr	0	0	0	0	0	0	0	0	0	0
CAGGGACCCTCATTTG	ref_2605_upstream	213	52	217	209	40	214	56	210	51	185
ACCTAGGCATTTGTTT	ref_2605_upstream	10	6	13	22	8	25	6	17	7	19
CCCTATTCGGTTTCAC	ref_2605_upstream	30	11	38	23	3	26	11	32	9	22
GGATATCGTAGGTGAT	ref_2605_upstream	168	46	184	164	48	171	60	151	41	139
AATGTACACTACTGCA	ref_2605_upstream	14	4	6	10	0	9	4	4	5	12
TTCCGCTCTTCTGGCC	ref_2605_upstream	283	90	364	332	75	310	103	283	96	246
AAACTGCTCCGTAAAC	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGGACGAACTAAC	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
AACGGCATGTTTTTAT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CAGGAACCTCTTTGTC	ref_2605_upstream	100	20	104	102	30	71	40	89	22	59
TTTTGTCCCACTGTCG	ref_2605_upstream	166	56	220	190	50	205	66	167	61	128
TGTTGACCCGCATTAT	ref_2605_upstream	363	103	444	365	97	319	91	324	101	310
GATCTCTTTGGTGCCG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
ACAATCAGCTTGTTTT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
AGGCACGGTGCACCGT	ref_2605_upstream	84	28	99	102	24	109	37	60	23	73
TAAGGGCTACCGTTCA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTACCTCTAGGAC	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTTTTCCTGACCA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
AACAGGAACATTCGGG	ref_2605_upstream	246	106	270	238	97	233	94	251	104	201
CTTTCCGATGGACTGG	ref_2605_upstream	192	51	227	203	58	191	78	176	71	178
GCCACGTTTAATCAGG	ref_2605_upstream	807	279	975	967	287	751	339	837	312	686
TTAACAACGATTTTAC	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGCCTGATTCGAT	ref_2605_upstream	142	36	185	158	50	157	33	142	37	124
TTAACGGCTCCGTTGG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CACCGCATGCGTTTCA	ref_2605_upstream	13	6	21	13	10	17	7	19	2	10
TGGCCTCGAACGAGTA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTATGCCGTAGTTGGG	ref_2605_upstream	19	5	14	15	7	19	4	16	3	13
ACCAGCGCGCACTATG	ref_2605_upstream	42	15	56	38	14	27	15	44	22	24
GGAGATCTCCGGGATT	ref_2605_upstream	36	11	52	55	10	49	8	44	6	37
ACTTACCCCTCGCTTT	ref_2605_upstream	18	23	31	18	40	11	23	18	39	17
TGCGCGAAATCCCACC	ref_2605_upstream	17	4	17	19	3	16	3	16	2	13
AGGCCTTACCACCCTT	ref_2605_upstream	69	20	84	63	14	65	24	78	35	64
CTTAATTATGATTTAA	ref_2605_upstream	360	114	474	417	112	412	120	382	147	339
TGAATATTGTCATGTT	ref_2605_upstream	110	48	149	123	29	109	43	117	41	94
CCACGCCTTGGTTAAC	ref_2605_upstream	15	14	21	25	13	19	11	23	14	17
TTTTTTCTGTCGCCGG	ref_2605_upstream	32	8	33	22	4	26	13	30	10	29
TACATGTTTTTTTCAG	ref_2605_upstream	69	14	86	72	21	50	15	76	19	47
CCAAAGTAAGACAGAA	ref_2605_upstream	163	43	196	169	38	140	49	183	52	133
TTTGGCAATTTTGATA	ref_2605_upstream	93	22	124	125	38	92	33	105	31	85
GATCAATGTTTGTTAA	ref_2605_upstream	54	19	56	54	22	51	13	49	16	51
AGTTAAAGTTTGTGGT	ref_2605_upstream	1	0	1	2	0	0	0	3	3	3
TAGGTGCGTAATTAGC	ref_2605_upstream	67	29	82	67	15	69	21	61	30	68
TCTAAGTCCTCTCTAA	ref_2605_upstream	426	115	483	451	140	390	130	397	131	353
GAATGAGATAGAACTC	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTGTCGGTTCGCG	ref_2605_upstream	320	108	419	344	91	339	94	286	92	298
TTATAATCGTGACCCT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTCTAGGTGTAG	ref_2605_upstream	72	36	90	82	30	82	39	70	30	82
AGTTTCGGTCCCCATA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTTTGGGTCCCAC	ref_2605_upstream	92	26	107	110	15	86	28	74	25	88
GACTGCTCTTAACGTC	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGTCGACAGATCT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CAGGAACTCTGGTCAG	ref_2605_upstream	61	22	53	60	15	51	14	48	23	55
CACTTTTGGACTTGCC	ref_2605_upstream	173	39	210	191	48	136	49	167	65	140
GATGTATTCGTGTTGA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTCAGTCCATTAC	ref_2605_upstream	107	33	142	113	37	87	32	94	51	93
GATGCCTCCTGGAATT	ref_2605_upstream	57	21	63	55	22	50	23	40	21	35
TGTCCATCATAGCATG	ref_2605_upstream	107	36	93	103	24	101	25	87	26	70
TGTCGCGCGTCACCCT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGTAAAACGCTGC	ref_2605_upstream	245	75	306	243	62	221	90	223	58	178
GTCCACCACGCCTTGG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
AAGTCTTCTGCTGTAA	ref_2605_upstream	58	17	75	55	15	61	12	50	16	48
CGCCGTGTAACGTGGT	ref_2605_upstream	79	15	100	86	21	62	29	73	28	83
CTATTAAATGTCTTAC	ref_2605_upstream	32	14	51	42	19	31	14	36	15	33
CCCGTAGAAAAGTTTT	ref_2605_upstream	40	9	42	43	14	38	17	39	23	30
CTGGGTCGCCAATAGT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
GGACCAGCGTAATATG	ref_2605_upstream	281	99	338	374	79	287	97	253	108	265
TCTTCTTTACGTGCTT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TTACACAGACGGTGCA	ref_2605_upstream	121	31	156	129	32	117	30	128	41	97
CTACTCTCTCTTGCTT	ref_2605_upstream	69	21	77	52	19	73	13	52	23	51
CCCTCCCGCAACTTGG	ref_2605_upstream	105	35	118	138	41	127	29	101	61	86
TATCGTCGTCCTCGGT	ref_2605_upstream	127	40	151	131	40	122	44	129	50	141
TCAAATTGATGAGTCA	ref_2605_upstream	12	1	24	17	2	13	4	23	2	6
ACATTTGCCGATTAGT	ref_2605_upstream	675	190	788	715	222	572	207	624	220	577
TCGCGCTAACCCAGAG	ref_2605_upstream	69	15	63	56	11	53	17	47	26	37
TGATAGGAACTTAAAG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CACGGAACAATCGAAA	ref_2605_upstream	10	4	31	21	9	20	10	29	9	32
CCTAGGGTGTGACAAT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTCTAAGTCAGAC	ref_2605_upstream	140	56	143	118	43	117	54	119	54	92
ATCTGCAGTAATTCAT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGCAGTGCCTTG	ref_2605_upstream	61	24	59	55	18	53	18	71	14	47
GGTGGATCAAGAGCTC	ref_2605_upstream	225	64	264	236	67	221	52	184	82	167
ACTACCCATAGATTGC	ref_2605_upstream	67	23	82	76	30	60	24	65	22	80
GATTCATTCCTTGTGG	ref_2605_upstream	74	18	78	63	27	65	22	56	16	47
AGTTGACGTTTAAGAG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TGATTGTGTTTAAGGC	ref_2605_upstream	44	17	60	53	24	46	21	61	24	31
AGCGCCGTGTGTTGAA	ref_2605_upstream	178	50	231	165	96	140	72	150	45	142
CTAAGGTAACTTTGCT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAAGTTAACTTAA	ref_2605_upstream	63	24	80	93	31	61	24	85	34	57
GGTGTTGGTCTTGTCG	ref_2605_upstream	9	3	8	15	3	4	2	4	1	4
GATCTCGCGTCCGTTT	ref_2605_upstream	179	51	228	196	68	173	69	168	69	162
AAAATCGCTTGATGTG	ref_2605_upstream	58	20	100	78	33	63	17	72	20	71
AAGCTTCTCTGGTACC	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCCCATCCTTGAT	ref_2605_upstream	45	15	69	60	18	53	24	33	23	42
ATAGTTCGATTCGAGG	ref_2605_upstream	75	17	90	86	28	82	21	55	30	60
TGCTGCCGCCCGGTTG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCTATCACATAA	ref_2605_upstream	38	12	29	38	10	35	12	42	12	26
TATCACTATCCCTTGG	ref_2605_upstream	99	38	107	136	36	107	46	98	43	105
GCATAAACGGGGGTGG	ref_2605_upstream	56	13	71	66	27	53	17	38	20	43
CAGTTAGACGGTTGTC	ref_2605_upstream	328	110	382	324	95	287	139	282	121	214
GTGCGCCTTCTCCGTA	ref_2605_upstream	7	1	6	5	0	4	2	6	1	4
AGTTTCTGGCGTACGT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CTGATTAAATGGACAT	ref_2605_upstream	104	27	115	114	31	101	35	109	31	88
ATTTGGCCTGTGGTCT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CGAATTCTTCCGCGTA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTCGCGTCTTTTA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCCTGTACGATCT	ref_2605_upstream	70	24	81	62	14	58	17	63	24	58
CTGTTGCTAGCTGATA	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTGACGTTCTAGGGCG	ref_2605_upstream	76	24	68	63	21	65	25	48	20	61
ATTTGTTTGGGCCTGG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGTACCGAACTTG	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
TCAGATTAAGCCGTTG	ref_2605_upstream	185	61	223	202	79	183	49	209	59	180
ATTTACGGTATGGCCA	ref_2605_upstream	252	66	330	272	51	274	72	264	73	248
CTTGTCTGCCTCGTAC	ref_2605_upstream	482	119	600	535	130	452	147	456	161	434
TTATCCTGGCGTAGTC	ref_2605_upstream	49	7	68	50	19	65	17	59	14	53
GACGTTCGAGCATGTT	ref_2605_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTCTTACAGGGT	ref_2605_upstream	168	50	218	165	50	172	53	162	54	124
TATGACGCCTCGGTTG	ref_2605_upstream	1	0	1	0	0	4	0	1	0	1
TTTCTATGATAAACCG	ref_2605_upstream	163	46	212	170	49	168	49	157	35	148
TACTTCAACGTTACGA	ref_5336_reverse	8	15	16	15	19	10	8	7	22	13
CGCAATCGAATCTTGT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGTACTCACATAA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
GGTGCATCAGCTGGGC	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
GCATTCGCTCCGCCCA	ref_5336_reverse	5	9	3	3	8	4	10	4	5	6
TAATCCTATGCATGTG	ref_5336_reverse	17	18	17	15	15	14	27	16	27	12
TACACTTTTAGCTTGG	ref_5336_reverse	5	0	7	3	6	4	9	3	6	4
TTGAGCTGTTCGGTTG	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
GCTATAGTGCATAAGT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGTACGATTGATC	ref_5336_reverse	16	25	17	15	16	16	16	12	18	21
TACTTACGGTCGCTAT	ref_5336_reverse	15	32	24	17	37	14	42	15	33	8
ATTCTCTTCTCATTTG	ref_5336_reverse	115	169	160	134	152	142	179	108	163	133
CAGTATGACTGTCGAG	ref_5336_reverse	14	32	25	31	36	32	29	20	25	20
TTAGAACTTAAGCCTC	ref_5336_reverse	9	4	11	7	11	3	16	4	15	6
GAATTGGGGCATTGAC	ref_5336_reverse	0	0	0	0	0	0	1	0	1	0
TTGCCAAAATTTGGGA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCGCTTAGGTAA	ref_5336_reverse	54	109	68	54	90	68	102	48	106	55
CATTCACGATTAAGCT	ref_5336_reverse	84	98	96	65	94	62	97	67	93	61
TGGGCATGCCTATTTC	ref_5336_reverse	98	122	124	97	110	108	137	105	121	76
CTAGCCCAATACTGTC	ref_5336_reverse	2	5	1	0	3	0	3	2	7	0
GTTAGCTCGCTACCCG	ref_5336_reverse	13	13	17	10	21	11	15	10	19	4
GCTCTGCTGCGAGCGT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCTTCGCATTCCT	ref_5336_reverse	16	14	27	17	16	24	23	17	22	15
CATCGCATAAGTACCG	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
AAGAACAGTTTTGCAG	ref_5336_reverse	38	45	40	40	49	48	53	36	46	26
TTGCAACTAGCTCTCA	ref_5336_reverse	46	100	65	73	100	53	98	51	103	64
AGGGGGAATTGCGCCT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGCAAATAAATAT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCTACCCCGGTGT	ref_5336_reverse	6	8	8	8	9	5	6	1	13	5
GTTGTCGATGCCCCGA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TTGGATCAAGTCAGTG	ref_5336_reverse	9	18	15	9	19	8	27	7	21	14
CGGTCGCCTTCAATTG	ref_5336_reverse	8	25	6	7	32	5	21	9	29	4
TGTAACTGGCCTCCTC	ref_5336_reverse	8	20	11	24	8	6	12	9	14	9
TGCTGGCTCTAAATTT	ref_5336_reverse	4	13	16	16	16	9	16	9	15	6
GAAATCTGTATTTGCT	ref_5336_reverse	28	31	38	29	29	27	23	30	33	16
GGAAGGCTCCCACTCG	ref_5336_reverse	27	28	31	19	32	41	41	10	35	30
AATAACTCCTCTGGGG	ref_5336_reverse	3	0	2	4	3	4	7	3	6	2
CTAAATATCGTGGAGG	ref_5336_reverse	25	45	50	39	43	45	45	26	41	20
CGCTCATAATGTTTTG	ref_5336_reverse	108	183	143	120	178	100	165	104	175	116
TCATCTGATCTGAGTC	ref_5336_reverse	3	2	2	2	2	2	1	1	2	2
TAGTCTACTTCTTATG	ref_5336_reverse	50	71	63	53	81	59	72	49	72	49
AATGTGGCACAGCCAG	ref_5336_reverse	10	5	4	4	5	6	12	8	9	9
CGTGGGCATGTTCATT	ref_5336_reverse	3	5	1	3	4	1	5	4	1	3
AATGCTCCCTACATAA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TATTCCTTTTTGTAAC	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGATGTCTCGGAT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CGGTAATCGTTTGATC	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CACTATTTGGCCTTCC	ref_5336_reverse	5	18	7	5	13	5	12	5	13	8
GCTCGCTTTAACTCGT	ref_5336_reverse	6	7	9	12	15	13	25	6	10	13
CGCCACGCGGTATGCT	ref_5336_reverse	17	27	11	15	21	15	27	12	16	15
CATTTACGTTACGTCT	ref_5336_reverse	4	8	12	11	10	6	6	6	13	9
CCCTGTGAAAGTTACA	ref_5336_reverse	5	5	15	14	15	9	12	8	13	7
CTTCTTGGTATACGAT	ref_5336_reverse	14	17	21	9	23	10	15	13	16	20
ATTTTATTTTCCTCAA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CCACGGGAATCTAGAA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCACCGGTGGGGA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTGCCGTCTGTCA	ref_5336_reverse	6	10	11	11	14	10	13	3	18	4
AGCCACTTCACCATGG	ref_5336_reverse	34	64	27	37	40	25	56	26	60	26
AATATATGCGTTTGGG	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TGACATACTTGGGATA	ref_5336_reverse	19	15	37	17	22	24	29	27	22	22
ATCATTAGATTTGACC	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGTTCCTGGGTTT	ref_5336_reverse	3	2	2	0	3	6	7	6	1	5
CCAGGTCATGCCTAGG	ref_5336_reverse	14	75	20	13	62	9	82	10	71	12
GCCTTTGCCCCGCCGC	ref_5336_reverse	18	22	21	18	20	13	26	8	22	11
CTTCCGTACGATCTTC	ref_5336_reverse	64	79	82	44	84	64	84	57	75	48
AGTCGGATCACAGTTA	ref_5336_reverse	48	64	62	55	58	44	57	66	64	43
CAGGCGTCGTGTGAAG	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCTTGGCATTAAA	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCCCTGCCTATAC	ref_5336_reverse	25	63	35	31	51	32	60	25	65	21
GCATATAGCGAAGCAC	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTATTGCCCTTAT	ref_5336_reverse	5	11	13	13	7	4	17	9	10	6
CAATCATCGGTTTTGC	ref_5336_reverse	3	3	1	3	3	1	4	1	4	2
AAGCCTCTGCGAAAGG	ref_5336_reverse	17	38	31	18	32	14	27	25	39	23
GACTAATTACTGGGGT	ref_5336_reverse	32	41	41	29	37	30	47	24	68	27
ACTTAACGAATTGGAC	ref_5336_reverse	16	28	16	22	31	20	35	20	20	14
AAGTTCCGCCATCCCA	ref_5336_reverse	6	20	34	18	26	15	20	10	23	17
GTAACCTGCACACAGT	ref_5336_reverse	118	167	135	117	200	126	179	104	169	83
TAGCTGTTGTGGCGTT	ref_5336_reverse	49	44	59	43	52	37	40	40	42	45
GCTCCTACAATGCAAA	ref_5336_reverse	11	20	26	14	26	19	27	14	27	14
CATGTGGTTGATTCTC	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
ATCTATTGGTAAGCGT	ref_5336_reverse	41	64	67	51	76	46	76	60	80	30
GTTTCCTGGACTTGTG	ref_5336_reverse	64	89	99	76	116	82	119	85	115	71
ACCCGGTGCACCATTT	ref_5336_reverse	16	27	18	22	21	15	16	20	24	20
TGATGAGAACTGAATT	ref_5336_reverse	12	25	24	13	28	10	27	21	26	16
ATCCCTCGTTCATCAT	ref_5336_reverse	2	3	4	3	9	7	6	6	6	4
ACCGTTCCCCTTTATG	ref_5336_reverse	26	104	59	40	139	34	135	22	136	27
GTACTTACTTCCGCCG	ref_5336_reverse	33	43	30	28	57	15	48	21	34	25
TTTCTCACAAGTTCCG	ref_5336_reverse	24	19	19	22	17	19	24	12	27	18
CTACTAGGCAACTGCT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
GAGATACCATGTACCT	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGACCTGAGTCAC	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
CACATCCCGTGTATCT	ref_5336_reverse	53	51	44	35	70	27	53	54	58	44
ACTAGTGTGCAGGTCG	ref_5336_reverse	0	0	0	0	0	0	0	0	0	0
TCGACCGAGTGTTTAC	ref_5336_reverse	33	47	40	31	58	33	46	32	43	26
GGTGCATACAGTACAC	ref_5336_reverse	7	12	9	6	14	7	21	5	13	9
TACTCGATTTGAGGAT	alt_5419_RC	71	50	86	73	71	64	65	66	73	61
CCAGCGTGCGACCCGC	alt_5419_RC	2	15	2	2	8	1	8	2	7	2
TTTTCTTTTTGTCAAA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
ATATCCACTTCAAAAA	alt_5419_RC	7	5	6	11	12	3	5	7	10	6
TGTACTTTCTTTCTGC	alt_5419_RC	56	42	54	68	41	47	52	44	81	40
GTATCATTGTCCCATG	alt_5419_RC	17	17	28	13	20	12	4	17	30	17
AGCCGTATATAGGGTG	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
ATCTTTTTTAATTGCG	alt_5419_RC	98	93	104	99	98	87	120	94	116	87
TTCTATTTTTCGAACG	alt_5419_RC	57	66	74	54	59	62	78	65	63	57
TTCGCCGGCACGTCTC	alt_5419_RC	37	40	47	30	42	23	34	39	42	26
GACACTCGTACAATCC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
ATGCTCTAAAGGGGGA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
ATTATTCCGCTATGAA	alt_5419_RC	27	28	29	28	21	38	26	23	31	18
CCAGGCTCGAGTTCTT	alt_5419_RC	6	35	9	7	26	11	27	6	25	6
CTTGCCTTGCAGCTTC	alt_5419_RC	35	31	39	33	37	38	39	21	46	22
ATTAACGCGCCTTTAA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
AAACGGTTGCTCCACT	alt_5419_RC	406	471	475	417	458	403	479	381	503	329
GTGGTGCCCATCTGGC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGATCTTTTGGG	alt_5419_RC	34	37	44	22	27	31	25	22	29	15
TTCGTATCTCAAGGAA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CAGTTCGAAATGCTTT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
ATCACCGTTTCTCCGT	alt_5419_RC	8	12	8	8	22	16	22	12	17	11
TGACGCCATCTTTTTA	alt_5419_RC	93	75	111	98	64	106	80	86	86	83
CGTGCCAAATCAATCG	alt_5419_RC	49	74	75	70	89	53	100	38	109	41
ATTTGTATAGCCCTCG	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GCCAGCTTGTATCTCG	alt_5419_RC	26	41	40	38	44	32	33	28	44	20
GCTGCTTTCAGTGGGT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GCTCGAGATCCGTCTT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GGCATGTGACACCGGT	alt_5419_RC	22	22	34	27	36	23	37	15	27	18
GTTCGAATGTCGAGCG	alt_5419_RC	26	15	26	26	16	26	19	20	32	25
CTCTGAATCCCTTTGC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
TTTGCCCTCGCCTGTG	alt_5419_RC	49	76	62	40	99	47	75	49	91	56
CCGCCAGGTCTTCTTA	alt_5419_RC	40	57	42	38	48	34	49	42	54	27
CATCATTGGCCGGATC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
ATATATCTTTTAAAGA	ref_5419_RC	4	11	9	6	6	9	6	8	9	7
ACGCTTAGATTGCAGC	alt_5419_RC	6	4	6	12	15	6	11	5	14	11
TGAGGTCTAGGACTCG	alt_5419_RC	2	3	4	2	3	2	0	0	6	1
TCCGCGTATCGTAACT	alt_5419_RC	29	47	37	27	35	19	26	26	29	17
CCTACACAAATGCCGA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GGCGTAAGTTCGCGAC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CTATTATTACGACTTT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GCGGGGGAGAGTCGCT	alt_5419_RC	34	37	32	27	39	29	38	27	32	31
TGTGCCGGATAATTAT	alt_5419_RC	48	67	72	64	92	56	87	45	89	50
TGATATTCGCCATTCG	alt_5419_RC	2	10	9	2	1	3	10	2	5	1
CGGGTGCTAACCGGTG	alt_5419_RC	27	42	43	35	35	17	44	28	31	27
GAGTGTTCCAGTGACT	alt_5419_RC	17	24	19	18	36	16	22	11	18	12
TGGTGAACTGCTTTTT	alt_5419_RC	18	33	28	18	29	30	42	14	32	16
TGGCACGTATGATGTT	alt_5419_RC	73	68	67	82	66	67	79	69	101	51
ACCGAGTTCTTGACAT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CCTACGGTGGTCGCAC	alt_5419_RC	27	21	26	18	28	17	21	33	22	18
GCTAACACCCGCAGCG	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GTTACGAAACGGGGCA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
TGTGGACGGCTTTCCC	alt_5419_RC	40	49	66	38	40	40	42	43	56	46
GGTGGATTTGTGGCAT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
TTATACGTTCGGGGTA	alt_5419_RC	35	52	50	31	56	55	53	36	46	44
GCCTACGGCAACGATG	alt_5419_RC	13	14	6	12	13	6	8	11	12	10
GTTTCCAATTTGTGGC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
TGACCTAGGGGAGCCG	alt_5419_RC	11	11	9	15	11	18	9	11	14	11
TCCTGCGTTCTTCTCG	alt_5419_RC	32	33	27	25	35	21	28	16	32	14
GGCTCAGCAGGTGTAT	alt_5419_RC	50	56	48	61	56	48	68	43	69	53
CCGAGCGCATTCACCT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
TAGGCACATACTATAT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CGACATTGGAAGGATC	alt_5419_RC	37	38	35	32	30	28	40	24	53	28
TTAAGCGTTACGCCCG	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CAACGTTAGTAAATCT	alt_5419_RC	25	48	44	42	37	23	42	29	46	37
AGGCAAACCTTACAAG	ref_5419_RC	22	19	24	27	21	21	31	22	29	11
GCATTGGGCTTTTCTT	alt_5419_RC	4	9	20	3	6	7	11	12	7	6
GTCCATTAATCGCAGT	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
AAATCATTTTCCCCTG	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
TACGCAGATCGCCGAT	alt_5419_RC	68	65	70	62	47	39	61	44	48	33
ACGGATGGGCTTAGTC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GCAAGTCTCTTAGAGT	alt_5419_RC	32	58	52	36	63	31	55	28	65	26
TTCTGGTTATAGCGTG	alt_5419_RC	74	73	92	77	102	66	84	66	80	59
GTCTATCCGATCACTA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
GATTTGAGCATGCTTT	alt_5419_RC	10	9	20	15	17	11	12	12	15	12
TTTAGGCCTCGTTGAA	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
AGGTTTCGTTGGCCGT	alt_5419_RC	15	16	19	21	15	12	23	18	13	11
GCTTCCCTATAATGTG	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CGGATGAAAACCCTGC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CTCTCTCGGATTATAC	alt_5419_RC	20	22	23	28	21	30	28	27	21	20
ACATATGATCAACGAT	alt_5419_RC	31	37	60	56	50	45	52	48	64	34
AGGTTGTTTTGTATTT	alt_5419_RC	19	12	24	11	14	14	10	19	20	15
TCTTTGCACTCTGCTT	alt_5419_RC	47	45	54	46	54	41	51	42	55	43
CTGAACCCTCCGGCAC	alt_5419_RC	25	31	30	18	31	31	34	29	22	31
CATGGGCTCACGTTCA	alt_5419_RC	16	14	7	12	15	11	13	5	10	13
TGTTGACCTTGTCCCG	alt_5419_RC	68	82	99	85	83	100	104	82	125	68
ATGGAGCTAATGTGCA	alt_5419_RC	24	36	36	27	40	34	35	33	38	36
ACGCACTTGACTGCTC	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
CATTCAGGACATTGGC	alt_5419_RC	46	66	69	47	64	46	65	60	60	36
GTGGTTTTTTCCTGTG	alt_5419_RC	0	0	0	0	0	0	0	0	0	0
AATTCCAACGTCGGTG	alt_5419_RC	14	12	11	8	10	5	5	5	12	6
GTTTATGGTGTCTTAT	alt_5419_RC	23	34	41	22	30	33	37	23	49	31
CACTTCGGCTTATACG	ref_5960_new	0	0	0	0	0	0	0	0	0	0
ACGCGAATGGCGTGTC	ref_5960_new	3	8	10	1	7	10	8	3	5	7
CCTTCTATGAGTCACA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TCTGCTGTCGGCCCCT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
ACGCTAGCTATGCCTA	ref_5960_new	8	12	12	11	13	8	5	9	11	7
TCATATCGCTTTGTGG	ref_5960_new	19	36	34	27	37	29	34	31	36	32
CGCAGTATCCTTGCTC	ref_5960_new	7	20	12	13	10	10	20	12	9	15
CAGACTCTCAGCTTAA	ref_5960_new	24	57	60	44	40	42	46	39	35	49
GTCCTAAACCAGTTTC	ref_5960_new	0	0	0	0	0	0	0	0	0	0
ATTCAAACCCCTATTT	ref_5960_new	32	18	14	11	16	16	18	18	13	22
CTGTGTCACCTGTCCG	ref_5960_new	21	37	27	16	47	18	40	13	37	23
CGTGACTCGCCCAAGT	ref_5960_new	33	41	36	28	36	33	39	26	35	28
GTGTGTTTTAACCGCT	ref_5960_new	63	69	75	48	81	41	94	30	72	40
GGGTATGCTTTAACGG	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TTGGCCATCCTGTCTA	ref_5960_new	2	11	1	1	4	0	2	4	13	10
TCTTTGATCATTCAAT	ref_5960_new	20	20	21	14	18	12	25	14	18	13
GTTATCTTTTAGCTAT	ref_5960_new	28	46	45	33	56	35	65	37	72	63
CGCCAATCGCATGGTA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TACCACGGGACCAATC	ref_5960_new	74	118	87	77	94	79	95	79	81	49
GCCAACGATGGCTTAA	ref_5960_new	16	12	15	5	24	9	12	14	20	15
GCTTGAACTTGAGCGG	ref_5960_new	12	20	10	10	37	14	26	13	29	14
GTGGGGCCATGCTGTA	ref_5960_new	57	58	62	56	58	35	51	30	61	42
CAGTCTAGCTCCTGCA	ref_5960_new	25	32	35	34	45	26	32	26	49	27
GGCCTTTACCTTATAA	ref_5960_new	24	33	43	26	42	32	42	20	30	16
CCGCTCTCGCGTGCCT	ref_5960_new	1	9	6	1	7	0	17	3	6	0
TCTTCAGGATATTGAC	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CCCAGAATGAGTTTAA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
AAGCGGTGTAAATTTG	ref_5960_new	1	1	11	6	6	2	1	5	2	2
TTCTTGATACCTGTTG	ref_5960_new	14	28	17	16	27	15	22	15	24	21
GGCTAGCTCCCCTAGG	ref_5960_new	22	104	15	23	101	14	115	22	125	15
TATGAGTATACTTTTC	ref_5960_new	165	235	215	185	256	177	232	172	256	137
CATGCATCCGAAGGGT	ref_5960_new	31	47	45	37	40	38	46	23	45	28
TCACGTGATACCATCT	ref_5960_new	2	13	4	8	9	2	6	4	11	4
TCTTTCTCACCGGGGA	ref_5960_new	31	23	54	29	47	28	37	38	45	25
CGTGTACGATAACGAA	ref_5960_new	6	3	5	1	6	6	3	1	6	3
AGCACAACATATTGTC	ref_5960_new	29	28	29	12	32	26	29	22	38	19
ACTACCATCGGTACGG	ref_5960_new	8	7	6	7	8	8	7	5	6	6
GAGTTGCTATGTCTGG	ref_5960_new	19	32	30	28	41	31	27	27	33	18
CGTAACCACTCTCAAC	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TCTTTCGACTATCATA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
GAGTTTGATTATGTTT	ref_5960_new	27	26	23	21	31	24	24	24	23	17
GAAAGGACCTCCACAG	alt_5960_new	41	51	49	38	52	36	32	36	37	37
AACAGATCGCTCACTA	ref_5960_new	69	77	76	69	87	56	103	41	90	59
TGCCAAGTTCATTTGT	ref_5960_new	37	65	65	42	60	42	71	38	85	34
TATGTAGGGACTTGTT	ref_5960_new	3	9	6	3	9	6	4	4	3	1
GAAATCACCGCCCAGC	ref_5960_new	15	13	16	6	14	8	10	8	14	16
GGTTCCACGGGCCGGA	ref_5960_new	33	27	42	30	39	32	55	24	38	26
CTCCTTACGTTTACCT	ref_5960_new	23	35	27	15	23	24	27	16	39	19
GTACGGGATGCGACTT	ref_5960_new	15	10	14	14	11	19	21	9	13	12
GTGACTATGTGCTCGT	ref_5960_new	15	8	12	14	23	3	18	8	13	11
TGCCCTTTTCCTCACG	ref_5960_new	36	42	29	33	20	23	22	35	44	29
GACTTAATCTCTGGAC	ref_5960_new	106	107	75	72	89	92	125	74	112	80
GCTTTTTCAGTGACTC	ref_5960_new	85	104	105	88	99	60	100	51	132	73
ATTACCTAGAACGCGG	ref_5960_new	11	11	14	6	15	8	7	11	8	5
CGTCATGAATCTTGCC	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CTCGTGTATGGCCGCA	ref_5960_new	41	38	51	45	41	36	40	36	34	41
GGTAGGACGCCGGTGT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
ATAGTCTGCTCTTTGA	ref_5960_new	28	27	26	24	27	23	42	24	33	25
CAGGCAGGCGGGAGGT	ref_5960_new	14	8	13	12	7	8	8	6	16	17
GCAGCGTTCGTAGAAT	ref_5960_new	1	10	8	7	8	5	6	5	7	3
CTGGTCCGAATCCATG	ref_5960_new	18	22	33	14	28	33	38	16	35	32
CGGCCAACTGCGCGTT	ref_5960_new	98	233	144	107	176	90	212	87	248	79
CCTCTTTTGCCATTAG	ref_5960_new	46	59	41	39	51	42	69	50	44	39
AGATGTGTCATAGCTA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CTATTTGATCCTCTCT	ref_5960_new	8	8	12	3	8	4	5	10	5	6
TTATGTTGCTTGCTTG	ref_5960_new	0	0	0	0	0	0	0	0	0	0
ATACAAGAGTTTCTGG	ref_5960_new	27	42	43	35	40	35	44	28	53	31
CGAACTGACTCGTTCT	ref_5960_new	5	2	1	2	4	3	4	2	2	0
AGTCCTCGTTTATCGC	ref_5960_new	16	27	15	19	25	13	28	21	34	18
TGATTTTTCGCAACCT	ref_5960_new	16	15	12	12	18	12	15	17	15	12
ACTTAGCGTGACGTTT	ref_5960_new	105	119	103	89	121	69	118	75	138	79
CAGTACTACGTAGCGG	ref_5960_new	2	2	3	3	7	4	7	5	3	1
TCGGCATAATCATGTA	ref_5960_new	59	67	84	61	56	55	60	54	71	55
GGTGGGTCCCATACGG	ref_5960_new	48	64	73	38	69	49	81	28	75	40
TAGATACCGTCCCTGT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
ATACTGGATTCGGCGC	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CTACCCAATCGGTGTC	ref_5960_new	1	9	9	5	6	2	5	0	3	1
AACGGCATCGGGTTCG	ref_5960_new	19	29	28	15	20	23	33	19	31	14
TTTTCCGGGGCCCTTC	ref_5960_new	4	2	3	8	4	1	13	6	9	4
CCCTTTGTTTTTGAGT	ref_5960_new	8	13	5	11	13	7	11	6	9	4
CGGTATCTTATTACAA	ref_5960_new	55	60	78	66	60	54	75	61	72	56
GTGGTACTAAGACTCA	ref_5960_new	14	27	15	19	24	12	25	10	11	7
CTGGACGTGAGTATGT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
ATTGAGCATCTCGCAA	ref_5960_new	10	14	21	14	27	21	22	14	24	14
GCGCATGTATTCCCTG	ref_5960_new	18	13	22	12	13	11	12	11	14	15
GCTCCACCCGTATTCT	ref_5960_new	21	31	24	18	25	12	23	14	23	20
AAAGTGATATTCTCGC	ref_5960_new	30	38	36	20	33	19	37	27	33	23
CTGGTTTTATCAGGAA	ref_5960_new	4	10	4	6	7	4	11	3	10	5
ACGCATGCGCGGTGCA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CAACTCCCCCGTAAGG	ref_5960_new	19	25	18	17	24	29	30	11	32	26
CCTTATATCACGGGAA	alt_5960_new	108	194	154	149	224	117	216	127	200	121
CTGTTATGGCTGTTCC	ref_5960_new	59	47	68	55	61	75	56	49	75	53
GGAAGCGATAATTGAT	ref_5960_new	8	7	6	5	10	7	9	5	12	4
CCTGGGCTTTCTTGTT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
GGTTGTTTATGAGTTT	ref_5960_new	12	5	9	4	2	13	15	5	8	10
TTAATTACCTCTGACC	ref_5960_new	12	18	13	15	22	8	24	12	13	10
TTGCGATGCGCCCCTA	ref_5960_new	32	64	58	48	49	38	41	42	50	50
CTATTTATGCACGGAT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
AATGTTCAACCGACAC	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CTCGGTTCACCTAGTA	ref_5960_new	2	5	3	2	3	3	5	4	4	3
ACCCTTTTTCATCATG	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TTGCATGGGTCTTAAT	ref_5960_new	17	32	33	28	20	21	43	28	25	27
GTACAGATAGTTGCTT	ref_5960_new	39	51	51	36	54	38	36	34	51	47
TATAAGTGCTGTTGTA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TTATGTTTTCCACTAT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CCCCATTCACGTCCTG	ref_5960_new	35	36	37	32	41	30	46	34	50	28
GCGTACGTTCATTGCT	ref_5960_new	6	6	4	4	4	6	5	2	7	1
CTAGGGGTAGATTATA	ref_5960_new	18	27	20	19	20	22	15	18	27	7
ATAATTTGGGTATCGC	ref_5960_new	1	2	0	0	0	0	1	0	0	0
CTAGAGACCTTCTAGG	ref_5960_new	40	82	69	46	75	51	65	47	64	46
CTATCACCTCTTTAAC	ref_5960_new	6	13	9	5	13	3	11	6	8	8
TCATTATACCGGTTGA	ref_5960_new	50	42	52	47	46	34	60	27	64	36
GTAGTTACGACGCCTT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
AAAGGTCCTTAGTATC	ref_5960_new	38	40	37	25	39	40	30	32	39	38
CGATGTTTTTATATCC	ref_5960_new	46	36	55	23	44	30	41	40	58	34
CCCTACGGTACGTTCC	alt_5960_new	47	133	51	60	113	43	113	48	122	37
CAAGCTATCTAAATCT	ref_5960_new	37	53	42	43	47	41	50	29	53	30
GATTCAATTCTAGCGC	ref_5960_new	2	5	4	2	8	4	1	1	3	8
CCATTGATCTCGTGCA	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TCCCGCGTTACTTCAG	ref_5960_new	18	20	23	16	37	13	22	17	28	18
GTGTCTCCCCTTTGCT	ref_5960_new	5	18	3	8	6	3	13	2	20	3
AATTGTTTATGTTCTT	ref_5960_new	72	50	98	49	54	66	63	64	62	62
TTTGCGCCCTAGGGTT	ref_5960_new	31	31	35	37	45	36	48	38	40	34
GTATACACTCCGTGTG	ref_5960_new	6	15	6	1	14	2	6	4	12	2
CGGAGCGTTAATACTT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
TCGTGCAGTTGCTACG	ref_5960_new	94	110	80	90	120	70	125	76	132	76
AGATCGTCGGGTCTTA	alt_5960_new	9	18	18	27	13	14	26	11	10	15
GCTCCTACGTAATAGG	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CACACTTAACTTTGAG	alt_5960_new	259	305	301	276	378	226	327	269	404	226
AGTTAACGATTCTTAG	ref_5960_new	36	41	35	42	48	38	50	27	56	36
CGAAGGCTGGCGTCCT	ref_5960_new	84	85	97	81	96	68	75	61	99	68
AACTTAGATTAGCAAT	ref_5960_new	8	22	11	16	15	11	19	16	19	8
AGCGACACAATTTGCG	ref_5960_new	18	22	19	12	17	20	24	17	26	15
TATCAACCGATGTTCG	ref_5960_new	0	0	0	0	0	0	0	0	0	0
GAGGATCTGCAGTATA	ref_5960_new	13	17	21	10	15	16	18	11	21	16
GTCCTAGATCACTCCT	ref_5960_new	0	0	0	0	0	0	0	0	0	0
GTGATTGCTCTATGTC	ref_5960_new	0	0	0	0	0	0	0	0	0	0
CTCCTATTTATTTAGA	ref_5960_new	66	110	68	62	111	64	107	56	119	58
TTATTTTGGCAATGTG	ref_5960_new	0	0	0	0	0	0	0	0	0	0
GCCGCGATGAGGTCGT	alt_2582_upstream	17	12	19	22	12	17	22	27	24	6
ACGTTTTCGTGAGAAC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCTATCTAGGGCA	alt_2582_upstream	36	50	40	36	44	17	30	28	30	35
ATTCAACATCGTGAAA	alt_2582_upstream	10	16	23	15	15	30	18	25	17	9
CGTTACTCTGTAAGCG	alt_2582_upstream	6	14	14	7	16	11	24	17	8	8
TATCAAGATTCTAGTC	alt_2582_upstream	8	7	18	9	8	5	5	5	7	6
GGCCGCGCATCCTCGA	alt_2582_upstream	19	12	21	13	11	11	18	12	9	12
ATTGATATTTCGTTTA	alt_2582_upstream	35	27	35	34	34	23	32	27	32	31
TTTCTCATATTGGGCG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCTAGCCCGGAC	alt_2582_upstream	23	27	20	26	28	19	23	17	18	15
CGTCTCGGATGTTAGA	alt_2582_upstream	74	64	92	77	61	74	68	81	57	50
TTTTACTGCGGCGATG	alt_2582_upstream	9	16	17	8	7	7	18	11	13	8
TTTAGTTTATTCACTC	alt_2582_upstream	24	19	30	20	20	24	20	22	14	15
TGTAGCTTTACTCTGG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
AATCTGCCAGTCTGTT	alt_2582_upstream	11	4	8	6	4	6	12	12	8	7
GGTCCTGGACAACCTT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCACTCACAGCCC	alt_2582_upstream	45	50	57	51	37	45	30	39	65	45
CTATGGTTATGGTTTG	alt_2582_upstream	49	59	66	56	57	51	44	59	51	56
CATATTACAGACCAAG	alt_2582_upstream	6	7	7	10	10	9	8	3	6	8
CCGCAACGATTCATTC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACACCTGGATGG	alt_2582_upstream	26	26	24	27	12	18	24	20	30	17
ATTAACTTTCCTTTAT	alt_2582_upstream	1	0	3	2	1	1	1	7	0	4
CTGTCCGTTTCCTTTG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GGGATCAGATCTGGCG	alt_2582_upstream	31	38	54	46	40	46	38	30	36	29
TTCCTCCCCCGGATAG	alt_2582_upstream	98	84	85	94	109	70	105	80	126	79
GCTGAGCCCTTCCTCA	alt_2582_upstream	71	72	82	72	77	94	62	81	75	69
CGTCTACTGGTGAGAT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CCGAGGTGAGTATAGT	alt_2582_upstream	16	14	24	14	17	7	18	14	12	11
TCTTACATTTTTACAC	alt_2582_upstream	3	1	2	2	0	0	3	2	3	3
GGAGAATGGGAGTCTC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAGCGTTAGGGGC	alt_2582_upstream	232	241	294	250	291	233	267	234	273	218
GTGGGGCTGCCTACCG	alt_2582_upstream	7	6	4	2	5	8	5	4	2	2
AGCTTATGCTACGCCG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CATTTCTCTGTATGTT	alt_2582_upstream	9	13	12	12	7	11	5	11	8	7
ATGTTCTCAAAATGCT	alt_2582_upstream	8	10	14	14	8	17	11	7	12	5
GTACTCAGGTCTCCTA	alt_2582_upstream	12	19	11	9	29	9	31	10	28	4
GTGCCGGTTGAGCCCT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTTCGGATCTACC	alt_2582_upstream	21	22	26	20	22	34	21	20	17	23
CAAGATCATCCCGAGA	alt_2582_upstream	30	48	37	47	44	47	41	42	56	35
ACGGTTTCGCTCTCCC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GTGATGTTAACTGGTG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GCATCTGGTTTCCCAT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
ATGTACGTGCTAACCG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GTCCATCACGCTGCGA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGTACATACAGTGTGA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CACGCGCGCCCTTTGA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TCGGACTTATTGCTAC	alt_2582_upstream	27	23	33	27	19	22	37	17	27	21
GGATGCGAAAAATAAT	alt_2582_upstream	42	40	52	35	30	42	27	32	37	31
ATCAAGAACGTCTTGG	alt_2582_upstream	31	28	20	27	27	19	27	22	32	17
TGTGTGATCTTTCTGT	alt_2582_upstream	17	15	6	7	8	10	8	14	10	9
GGCTCGCTCGCTAATT	alt_2582_upstream	12	15	9	14	12	13	10	21	9	7
CTGACGCCCAATCATC	alt_2582_upstream	83	69	90	72	71	77	84	70	81	62
ACGTGGTCGTCTACCT	alt_2582_upstream	8	10	3	2	6	5	6	2	6	5
CCACCGTCTATCCGGG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCAAGGTTGTTGG	alt_2582_upstream	51	47	50	49	37	29	47	45	48	21
ATAGCTCCTGCGCCTA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTAGATAGCAGGT	alt_2582_upstream	15	20	25	11	17	16	15	16	20	12
CGTTTCACAAGTAAGT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GAGATTTTTTGCGGCC	alt_2582_upstream	11	8	13	10	10	8	11	14	8	10
CGTTGGTTTCGATCCG	alt_2582_upstream	30	29	34	33	36	37	27	23	36	32
AGCACTTGCATACTAG	alt_2582_upstream	13	20	27	24	14	23	22	16	26	25
GTAAGCTGGCTTTGCC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTCCCTCCCTACT	alt_2582_upstream	20	17	21	7	13	16	19	21	19	23
GACTCATCTTTACGGC	alt_2582_upstream	70	71	103	95	41	84	58	58	77	68
CTTGTGATCGCCCCAC	alt_2582_upstream	14	24	33	32	23	16	9	14	15	12
TACTCGATTGTTAGTC	alt_2582_upstream	28	31	40	36	38	22	33	38	35	37
CGGACATTTTCCCATC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCAAGCGTGGCGT	alt_2582_upstream	52	41	66	66	49	60	55	48	52	66
CCATTCTATGTTTCTT	alt_2582_upstream	98	69	105	110	85	77	84	91	80	72
AGCGCCTCTGCCTTAC	alt_2582_upstream	8	9	12	9	16	5	30	9	21	6
TCATACAGCCTCCCGC	alt_2582_upstream	0	1	0	2	8	1	5	2	12	0
TGTAGTTCATCGGTCC	alt_2582_upstream	4	2	1	0	6	3	2	2	2	9
TTCGTCTTCTCTTGCA	alt_2582_upstream	24	13	17	16	15	18	13	23	23	15
CCTGCCCCCTCGATTA	alt_2582_upstream	28	30	36	36	22	25	38	25	30	25
AGCGACGCTCTATTCT	alt_2582_upstream	41	33	41	40	37	29	45	27	30	31
TAAAGTGCGTTACCCA	alt_2582_upstream	85	93	103	71	114	74	76	70	83	59
TGTTAGACTTTTGTTT	alt_2582_upstream	8	6	4	13	7	9	10	5	9	12
TATTCCGATTTTCCGC	alt_2582_upstream	26	14	28	20	21	15	22	22	24	28
AGGGTTGGGCTAGGCT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CATTCAATTAGTCATG	alt_2582_upstream	37	41	37	27	25	46	41	35	28	39
AGATGCGTACCTAACT	alt_2582_upstream	8	7	10	3	7	5	6	12	5	8
TCATCTCGGTTCCTAT	alt_2582_upstream	3	3	4	3	4	0	0	8	1	3
GTTGTATCGTAAGAGT	alt_2582_upstream	19	19	22	26	22	23	26	26	30	20
AGAATGTCTTCGGTTA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGTCGTATTTTAG	alt_2582_upstream	12	4	7	16	12	4	8	5	11	11
CCAACGCCTAGTGTGT	alt_2582_upstream	6	8	13	11	8	7	13	8	6	8
TATTTCGCTACGTTAT	alt_2582_upstream	42	58	44	56	53	47	66	48	49	29
TGGGGTGTTATATGGT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CCGACTCGCCGATTTA	alt_2582_upstream	11	24	10	8	25	2	37	13	34	14
GTTAAGCCCGATGGAA	alt_2582_upstream	141	128	146	133	122	98	115	106	124	89
GTTTCATTTAGGGGTT	alt_2582_upstream	38	32	40	41	30	38	41	26	34	41
TTTTGCTGATTTATTC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
AAAATGTAGTTTTTTT	alt_2582_upstream	10	9	8	15	16	8	16	14	18	9
CATCCAGGGTTACGCT	alt_2582_upstream	44	30	38	30	31	43	30	32	30	30
GTGCGATCGCTTTTGT	alt_2582_upstream	13	9	15	16	16	18	20	16	19	16
ATGCGCTCGTTCTTTG	alt_2582_upstream	69	60	59	67	51	64	73	68	72	67
TCCATCCGTAGAGAAA	alt_2582_upstream	28	28	29	38	37	31	32	43	30	32
TTACCTCTAGCACCTC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCTCGACTTGCTA	alt_2582_upstream	21	33	35	25	39	30	23	24	27	15
TTGCACACTCATGTTA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGTATGGTTCGCA	alt_2582_upstream	14	18	27	22	20	23	24	20	24	21
GAGCCCCGGTCCCTCA	alt_2582_upstream	70	71	80	73	74	83	72	66	72	60
TCTTTGTATGCTTTCG	alt_2582_upstream	3	1	2	0	3	6	1	2	0	1
ACTCCGTGGAACGCCA	alt_2582_upstream	44	33	50	45	35	48	42	50	31	33
CTCGTTCCTTAATCTT	alt_2582_upstream	139	110	155	142	119	127	141	122	108	132
CCCCGAACGCCTCCTA	alt_2582_upstream	34	52	51	41	65	27	54	22	71	30
CAGATCTGCCTGCTTT	alt_2582_upstream	22	23	24	10	13	16	14	15	12	16
AAATCGCTCGAATCCG	alt_2582_upstream	70	57	96	83	60	96	60	63	71	67
GGTAATGCAGGTCTAT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
ACCCACGTCGGAACAC	alt_2582_upstream	7	6	8	9	7	2	8	7	7	11
TCTAGCAAAGGGGGTG	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GTCCACTCCCACCAAC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TCATACAGAGCCGGCG	alt_2582_upstream	12	11	22	18	15	14	18	10	11	13
GGCTCAGTGAGGTCAT	alt_2582_upstream	30	34	27	40	27	42	36	23	36	28
GATAGTTTTTGCCATA	alt_2582_upstream	3	13	3	7	9	7	11	3	13	2
ACGCGCCATAATAATC	alt_2582_upstream	216	205	275	226	197	220	196	203	204	220
CTGCTACCTGCTTTAT	alt_2582_upstream	64	65	74	57	65	61	47	64	51	53
GCCCCTCACTGAAAAC	alt_2582_upstream	11	6	15	14	13	5	11	10	5	15
GTGGCTCGGCTCCCCG	alt_2582_upstream	65	175	88	85	187	52	201	65	174	63
CCTCCCCATTACTCGC	alt_2582_upstream	12	32	15	14	30	8	32	17	24	10
ATGGGTCGATATTGGT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CCGTAATAAACATCAT	alt_2582_upstream	3	2	5	8	3	1	1	5	4	3
TATGCCTTTAAGCTTG	alt_2582_upstream	291	197	324	278	221	238	237	256	247	211
AGGGCATATTGTAGAC	alt_2582_upstream	32	38	55	35	41	44	35	44	40	35
TGATTCGTTTTTGTGC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGTTAGTACTAGG	alt_2582_upstream	22	32	37	33	20	22	27	22	24	20
CTGAGATATGTGCGAG	alt_2582_upstream	10	15	12	13	14	8	10	14	8	7
TATTCGTAACATGTCT	alt_2582_upstream	160	95	145	156	114	115	91	124	103	104
TACCATTGTTCATCGT	alt_2582_upstream	17	18	25	18	14	14	12	22	22	15
GGCCTATTCACCTTTG	alt_2582_upstream	39	35	54	30	29	38	25	38	29	31
GTTCGGCCGGCCCACG	alt_2582_upstream	16	13	17	19	21	14	9	10	23	16
GTGAGTCGACGTCTAT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
AACGAGATACTCCATT	alt_2582_upstream	3	1	2	2	2	1	0	3	2	3
AATTGCTCGACAGTCC	alt_2582_upstream	52	60	57	61	52	54	59	51	52	44
ATTACCTTTTCGTTCG	alt_2582_upstream	7	9	17	12	13	12	11	16	16	15
CCGCTTCGTGTTTCGC	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCTCTGTTCGCAA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
AAAGCAAATTCTTTCA	alt_2582_upstream	16	16	17	13	14	16	14	10	9	12
TTACCGGTTCGACTCG	alt_2582_upstream	3	6	5	10	17	5	15	8	9	2
TGACTACTTCTGGTTC	alt_2582_upstream	88	79	105	87	84	89	98	70	89	75
GCTTAGTCCATCAAAG	alt_2582_upstream	45	61	47	41	51	39	35	29	60	39
GCTTTCCTCTTTTGAA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGTATCATCAAG	alt_2582_upstream	12	12	26	30	16	14	22	11	28	11
ACAATCTCCCAGTGAT	alt_2582_upstream	12	26	23	31	32	13	22	17	27	11
GATCCGTCATGGTACT	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTATCGTACAACA	alt_2582_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTAGTCGTGGGTA	alt_2582_upstream	107	108	139	113	81	95	106	82	101	81
ATTTATAGGGATAATT	ref_5823_new	0	0	0	0	0	0	0	0	0	0
GCTTCAACGACGGGTA	ref_5823_new	40	52	35	43	36	33	43	37	34	33
TCCGGGGAAAGGGCTA	ref_5823_new	6	10	8	8	11	5	9	2	10	8
TCCACACGTTAATACT	ref_5823_new	30	41	37	24	34	38	55	26	41	30
CTGGCTTTCCCCGAAG	ref_5823_new	22	32	31	15	31	26	36	12	29	17
GTTCACAGCTACTTAT	ref_5823_new	88	151	104	101	161	90	155	73	185	89
GTAGTGAGCCGTCTGT	ref_5823_new	0	0	0	0	0	0	0	0	0	0
AGGGTTTGTCCGGATT	ref_5823_new	12	16	21	20	16	10	19	12	13	8
TTTTTCAGCCCGCGCA	ref_5823_new	15	11	13	7	19	16	16	5	22	6
CTGGCGGCGGCGGCAG	ref_5823_new	0	0	0	0	0	0	0	0	0	0
AAGTGAGGTTGTTATA	ref_5823_new	6	18	6	11	9	5	16	2	13	11
GAATTCGATGTTACCC	ref_5823_new	9	10	8	9	15	5	14	7	16	7
TCGGTCTCTTTCGAAA	ref_5823_new	0	0	0	0	0	0	0	0	0	0
TTTGTAACCGCCATGT	ref_5823_new	59	53	65	67	79	43	55	44	68	63
TTAGAGCCGTGTAGTG	ref_5823_new	9	15	9	13	15	11	15	15	17	10
CACTCCGACCACTTCA	ref_5823_new	2	5	1	1	1	2	8	3	4	3
CTGTATAGTGTGCTAC	ref_5823_new	41	46	43	31	57	23	73	22	68	23
TTTCTTATTCATCTCG	ref_5823_new	10	9	8	15	7	10	10	6	5	7
TTTGAGTCCGGTGTTG	ref_5823_new	6	8	12	15	15	9	18	13	11	10
TGAATGCCCATCTGGT	alt_5823_new	8	25	13	17	34	25	28	13	31	8
AGGCCAGCTTCACGCA	ref_5823_new	18	23	11	16	20	11	21	9	25	15
CAAGTTCTGCCTCCAA	ref_5823_new	9	16	14	14	18	16	25	15	25	10
TTGGTCCATCCGCTTG	ref_5823_new	15	30	16	14	24	13	22	14	27	13
AGAACTACCGCATTAT	alt_5823_new	115	146	113	106	165	100	145	83	164	91
TCTGCCCGTATTTGGC	ref_5823_new	1	2	1	4	3	2	6	3	4	1
TGCACGCTAGGTTGAC	ref_5823_new	40	49	50	47	50	20	60	41	62	29
AGAACTTTCGCCTCTT	ref_5823_new	0	0	0	0	0	0	0	0	0	0
GTGTATGTGTGGAGGC	ref_5823_new	72	108	88	86	109	86	121	77	121	70
GCAATGCACGCTGAGG	ref_5823_new	168	167	168	152	182	124	232	124	233	119
TTCATTCAGTTCGCAC	ref_5823_new	0	0	0	0	0	0	0	0	0	0
GCGTTCATGAGCTTCG	ref_5823_new	3	5	6	6	4	4	8	5	15	4
GGGTTTGCTCGCTTAG	ref_5823_new	280	439	320	300	418	267	445	252	455	226
CGGTGCAGAGAAGCAG	ref_5823_new	38	60	63	43	59	40	73	31	64	36
GCCGAAGAGTAGTTGT	ref_5823_new	19	24	20	24	23	18	24	21	26	17
TTGCGGGTCCCATTAG	alt_5823_new	14	59	51	23	53	33	49	24	64	34
ACAGGAGTCCTCGGTT	ref_5823_new	12	17	16	5	11	5	17	11	23	5
GTGTTCATTGTTGTTA	ref_5823_new	16	21	32	14	29	17	31	20	16	19
TTTGATCACACCGTGC	ref_5823_new	25	34	26	21	23	26	28	22	29	25
CTTAGCAGCCTGTAGT	ref_5823_new	18	35	39	23	27	23	33	18	45	14
TCGTACAGTTGCCCGT	ref_5823_new	9	8	11	4	11	10	6	8	6	2
GTATTACACCGTTAGC	ref_5823_new	28	19	28	27	26	15	50	12	39	12
TTCGAAGCTCGACTTT	ref_5823_new	12	16	19	24	24	9	24	11	29	22
GGTTAAACCAGAACGT	alt_5823_new	116	167	140	122	207	121	166	113	178	84
CGGAAGTCTCAATGGC	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TTGGTATCTGTTCGTG	ref_5823_new	22	48	53	50	61	37	59	38	56	34
ACGGAATGCCTTTGGC	ref_5823_new	70	95	89	77	107	61	123	83	121	68
AGCGTGCAAAGACATC	ref_5823_new	175	259	196	164	238	133	236	133	242	140
CTCATAAGTCTTGTCT	ref_5823_new	12	26	18	16	22	13	13	13	23	7
TCCGTGTTTCAAGGCG	ref_5823_new	25	66	31	30	85	31	71	20	92	31
ATGTTCAGTCGCGAAG	ref_5823_new	11	33	24	22	32	21	26	17	27	22
TGTGCTCGCTTGCAGC	ref_5823_new	2	5	9	9	13	6	5	6	16	12
CTTGGTGCCACAGGCC	ref_5823_new	9	12	5	11	9	4	14	6	12	7
GCGCTATTCGTGACTT	ref_5823_new	4	8	2	5	4	7	5	6	2	5
CACAATCACGGCAGAG	alt_5823_new	8	9	14	10	21	12	19	7	29	10
GGTTTTCTGGTATAGT	ref_5823_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTTCCCGTCAT	ref_5823_new	5	9	2	0	5	8	4	1	10	2
CTCAATCGTGCTGAAG	ref_5823_new	1	14	3	1	3	2	1	4	1	2
TCCCCGCCATTATCCC	ref_5823_new	15	36	15	17	26	8	35	24	38	10
GGTCGTGAGTCGCTAC	ref_5823_new	4	12	10	9	25	2	20	4	10	11
TGGATATCTAGGTGGA	ref_5823_new	23	59	48	47	47	31	52	41	61	37
GACCTGGCTTAACCAC	ref_5823_new	25	33	32	27	37	26	35	15	41	18
TGGTCATGCTTATTGC	ref_5823_new	27	40	22	15	39	25	38	29	54	17
CTCGTATTAATATTTC	ref_5823_new	57	86	90	64	71	59	72	63	99	66
TACGCACCCACGCACC	ref_5823_new	9	12	10	12	11	9	6	7	15	10
TTGCCATCGGGACCCG	ref_5823_new	39	37	16	22	45	33	45	26	50	22
TCCTGGGGTAAGTCTC	ref_5823_new	34	44	39	35	34	19	39	24	40	30
ACCCCCAGGTAAGTCG	ref_5823_new	39	47	47	43	44	27	54	37	46	40
GCGGACTTTTCGCATG	ref_5823_new	32	40	32	31	48	16	33	27	50	18
GATGGTAAGACACCGG	ref_5823_new	2	19	5	5	5	14	10	4	11	5
GCGCCAAAGTATTGGG	ref_5823_new	63	64	75	51	76	57	65	47	78	48
GCAGGTGGGTGTAAAA	ref_5823_new	42	56	35	36	46	32	55	26	44	25
CCGCCAACTGACGGAA	ref_5823_new	10	17	11	4	24	5	28	5	26	1
GCGCTTTATGTACGCT	ref_5823_new	0	0	0	0	0	0	0	0	0	0
GCTGTGCATCCTGCGA	ref_5823_new	0	0	0	0	0	0	0	0	0	0
ATGTCATACTTACTGG	ref_5823_new	21	81	31	25	78	22	76	22	72	16
TATGGGACTGGAATGA	ref_5823_new	38	55	48	30	48	29	57	32	46	34
GGCCTTTATATGCTTC	ref_5823_new	39	49	31	30	52	26	38	33	51	34
TATTGCAAACCATGCT	ref_5823_new	11	21	19	15	23	8	25	20	22	19
TCTAACTCCTCATTGT	ref_5823_new	0	0	0	0	0	0	0	0	0	0
CTGATAAGGGTCTAGG	ref_5823_new	0	0	0	0	0	0	0	0	0	0
TGGGGCTGTGTCCCGA	ref_5823_new	27	60	43	25	49	29	53	34	61	33
GGTTATACACCTAGCC	ref_5823_new	0	0	0	0	0	0	0	0	0	0
TAAGACGGTAACTAAC	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TGACGCTTCATCATCC	ref_5823_new	0	0	0	0	0	0	0	0	0	0
TTCAATTTGCATATCT	ref_5823_new	9	12	6	8	11	5	8	7	17	4
ATGGGTTGTTGGGCGT	ref_5823_new	6	10	8	11	6	5	13	4	7	6
TTAGCCGTGCCTCGGG	ref_5823_new	34	58	47	43	59	45	67	46	59	28
TACTCGTCCTGTTCTC	ref_5823_new	64	81	59	62	71	61	100	71	105	51
TCCATTAGCGCTTAGT	ref_5823_new	115	144	128	129	141	87	144	97	147	99
TGCACCTAGAGGGCTA	ref_5823_new	4	9	10	3	11	4	4	2	10	2
CATAGGTCGTTATAGC	ref_5823_new	5	5	6	8	7	10	10	1	9	2
TCATAAAGGGCAGTAG	ref_5823_new	9	23	15	16	20	13	19	14	12	10
CAAGTATGAAGCCGGT	ref_5823_new	84	109	92	95	119	94	118	105	114	87
TCCTTACTGCTACGTT	ref_5823_new	7	2	9	2	2	1	5	3	2	4
TGAGTCACGTGACTCT	ref_5823_new	24	18	25	20	33	17	31	15	21	15
GTCATTTGCAAGTCAG	ref_5823_new	0	8	2	4	1	3	2	3	8	6
GCTCAGGTAAATGGGG	ref_5823_new	11	7	7	7	5	2	2	7	6	2
CGGCTCTTATTGATTA	ref_5823_new	33	28	34	25	32	17	32	20	37	30
CCTGGCCCGGACCTTG	alt_5823_new	15	64	19	21	74	9	53	18	49	14
CTAGTGCCGATGCCTG	ref_5823_new	49	87	62	40	80	52	76	58	69	48
ACGGTTGGGGAACTCA	ref_5823_new	0	0	0	0	0	0	0	0	0	0
TCCGTCATATCGCCGA	ref_5823_new	15	21	12	12	6	8	18	8	24	7
CGTCGCGGAGTCACTG	ref_5823_new	21	33	23	30	24	32	24	22	35	21
TCCGCGTTCACGGCTG	ref_5823_new	69	110	93	59	109	51	115	66	90	60
TTCACTCCGATCCGGC	ref_5823_new	0	0	0	0	0	0	0	0	0	0
CCGTTGCTTTCCTTCG	alt_588_RC	0	0	0	0	0	0	0	0	0	0
AGTAAGTGCTATGTAT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
GTTTATATTAACCCTA	alt_588_RC	135	101	144	142	106	116	101	126	95	118
CTTGACACTGTAATCG	alt_588_RC	0	0	0	0	0	0	0	0	0	0
CACCCATTGCTACCGC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TAACGATCGAGCTGAG	alt_588_RC	105	101	111	131	103	89	109	89	117	96
ATTATCGATCCTGTTC	alt_588_RC	27	19	21	26	9	24	20	24	16	29
AACGGCGTCGACTCAA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
GTATTGGGTGTTTGAT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TGAGTTCACTTCATGT	alt_588_RC	60	50	76	60	46	44	51	50	46	46
GCGTTGATCTACTAGG	alt_588_RC	20	11	31	30	10	18	20	23	15	15
TTTAGTGAGGGGTTGC	alt_588_RC	50	33	38	40	44	40	34	28	43	34
CTGGCGATGTTCGTCC	alt_588_RC	85	66	89	81	72	73	69	81	75	71
CCATCGCGTTAGCAGG	alt_588_RC	70	67	88	84	73	84	79	55	63	80
CATGCATAAAAGATAA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
CCCCCCGACTCTAGAT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
ATGTAACTAAGATTTC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TTTATTATGAGTTAAG	alt_588_RC	309	220	391	314	254	325	260	270	262	262
CATTACTTACTTATTA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TATATGCTTTACTGCC	alt_588_RC	222	142	251	208	127	203	185	160	148	175
GATGTGACAGATGCCA	alt_588_RC	191	148	224	216	148	175	170	168	177	154
GTAACGTCTGTTCCCT	alt_588_RC	193	166	211	211	120	162	170	160	160	184
GAGAATGGCGACGGAG	alt_588_RC	159	105	154	120	94	140	97	111	99	128
ACATCAAGTTGTTGGA	alt_588_RC	75	43	86	80	59	64	48	63	49	58
GCCTAATCTGCTGTTA	alt_588_RC	10	5	8	5	7	8	4	3	7	7
CTTACCTAACTTCCGT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCTGGTTAATAC	alt_588_RC	143	126	158	133	130	131	119	124	95	115
AGTACTTTTTTTTACC	alt_588_RC	104	57	104	76	55	94	54	70	70	89
CTATTGTCGAATCTTT	alt_588_RC	16	12	5	8	13	4	9	13	11	5
GAATCATTCCTGTGTG	alt_588_RC	64	75	80	91	65	72	49	79	54	54
TCGCACAACTCCGTTT	alt_588_RC	56	99	63	71	90	73	97	59	99	59
AGGCCCTGCCACGGCA	alt_588_RC	18	11	24	16	6	14	6	7	4	11
CATTGCGTTTTCAAGT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
AGTCCTGATGGACTTC	alt_588_RC	120	102	155	135	113	147	104	137	114	97
TATTGGATCCGCTCTT	alt_588_RC	90	76	110	101	81	98	99	79	101	79
GTCTATGCGTTGTCGA	alt_588_RC	17	16	15	11	12	17	10	20	11	13
GGTGTTTATTGAAGTT	alt_588_RC	32	27	34	34	28	32	40	31	22	40
TACTATGTAAACGCAT	alt_588_RC	53	21	70	52	45	49	30	34	30	38
TGTTGTGTAGTTATCT	alt_588_RC	15	10	4	11	8	11	6	8	6	6
TACTGCCTCTTCAATT	alt_588_RC	28	23	22	22	25	23	20	28	35	21
CGTCTCCAATGTCTGG	alt_588_RC	31	32	30	42	16	32	32	28	21	32
TTGATACAAGACTACG	alt_588_RC	9	7	18	22	18	6	13	13	18	16
CCCTTCCTACGCCGCT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TAGCGATGGATTGCAG	alt_588_RC	36	30	43	38	28	33	19	34	19	34
AACGAACTCGGTTGCG	alt_588_RC	56	38	83	55	40	38	43	48	34	44
CACTCGCCCTGAAGGT	alt_588_RC	18	22	32	21	29	28	15	40	26	28
AACCGAAGACTTCCCA	alt_588_RC	36	15	31	24	21	30	36	36	31	36
CCACGATGTGTCTATT	alt_588_RC	88	70	123	101	90	80	84	77	69	72
GGCCGCAATTAGCGCT	alt_588_RC	13	20	22	13	15	21	21	21	19	9
CTCAAAGTTATAAGCG	alt_588_RC	13	14	15	18	8	8	10	16	14	11
AGTGGTATGACCTACC	alt_588_RC	7	2	7	5	5	4	2	8	5	2
TAAGGGATTAGGCATT	alt_588_RC	2	3	5	8	1	3	1	9	4	6
TCTGACTTTTACAGCC	alt_588_RC	25	18	24	16	20	15	14	19	15	17
CAGTATAAACAACTCT	alt_588_RC	15	9	9	10	6	12	11	12	11	11
ATATATCAGCATTTCT	alt_588_RC	26	29	39	45	18	35	18	33	26	36
ATTACGATATAGTTTT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
GCTCAAGTGTGGTTGC	alt_588_RC	52	44	65	52	38	52	33	54	41	41
AACGCAACTTGTAACG	alt_588_RC	11	8	17	17	16	18	4	13	13	11
CAGGCAGATATCCTTA	alt_588_RC	14	6	19	17	8	12	10	21	21	13
ACGGGTCTTGGCCTTC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
CCTCAGTTATGCGGCA	alt_588_RC	70	50	109	59	54	82	56	54	49	77
CCGCGTCAACCGCTAT	alt_588_RC	370	403	449	385	445	300	427	347	417	289
CGACGCGAATTTGTCC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
ATGGTGAGTAAGTTAA	alt_588_RC	457	221	501	437	312	404	278	446	295	392
CCGTGCTACGCTTTCG	alt_588_RC	1	2	0	1	0	0	1	0	1	1
TTCTTCACCCGGCTGA	alt_588_RC	8	4	7	17	6	8	5	7	3	12
CCGGAATGCACCATTA	alt_588_RC	31	43	37	36	38	42	41	40	33	29
TGATACTGGATTGTGT	alt_588_RC	12	4	22	19	7	12	14	11	8	19
CCCTCTGGCCCAAAAA	alt_588_RC	154	114	216	178	122	142	148	185	124	141
CCAGGCTGTTATTACC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TAAACGAAAACAGTAC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TGCTTTTCTTCATTGT	alt_588_RC	59	32	41	45	22	34	17	39	25	45
CGGGTGTATAGAGTCT	alt_588_RC	23	25	23	10	19	21	9	18	19	10
GCTAGTGGTAATCTTC	alt_588_RC	54	49	65	50	33	54	57	48	39	53
CTGCGTCAACCGCTAT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
CTATTTATTCTAGAGA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGTACTGATAGC	alt_588_RC	25	22	28	22	22	28	15	27	21	26
TGTTCGTATCTTTGGC	alt_588_RC	19	15	22	33	28	25	8	25	27	20
CAACTCGTCCCTCCGC	alt_588_RC	18	11	19	20	10	15	15	17	25	13
TAACTTTTTGTTGCGT	alt_588_RC	0	0	1	2	1	0	0	0	1	0
GGCTTAGGTCCAGGAA	alt_588_RC	10	5	9	12	10	12	5	13	10	17
AATTGTGGTTGAGCGT	alt_588_RC	69	82	111	80	67	76	54	77	50	64
TCCCCTGACGCTAGTT	alt_588_RC	19	12	19	26	12	20	25	10	23	21
ATCCCGTATCGCCCAT	alt_588_RC	7	10	11	4	6	4	5	5	6	9
GATTGGATCTTTGCGC	alt_588_RC	80	56	116	97	83	85	64	93	67	80
CAGATTTCGCTGTCGG	alt_588_RC	115	116	131	150	120	134	105	111	113	114
GATCCAAAGCCTTTTA	alt_588_RC	73	92	98	75	55	65	63	76	71	69
AGGTAGGTTCCTCCGG	alt_588_RC	12	7	14	11	9	18	11	15	10	8
GAACGTCGTCGTACAA	alt_588_RC	34	37	42	45	36	41	33	39	35	38
GGTAATCCGTCGTCGT	alt_588_RC	22	13	23	15	10	15	10	16	18	9
ACTAAGTTCGCTGCCG	alt_588_RC	5	5	1	4	2	4	4	5	4	5
ATGTGACCGTCTTTGA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TTTGCGTTCTATCTTT	alt_588_RC	63	44	82	86	51	69	54	52	56	55
AGACTTGAAGCTCGCA	alt_588_RC	29	22	45	47	24	34	30	37	35	38
GTGTCCCTTGCCTCTC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
CTTATTCTGGGGTTTA	alt_588_RC	13	6	2	16	7	6	4	11	12	10
CTGTGGTAAAAACCGT	alt_588_RC	20	13	14	16	8	5	12	7	12	9
GCGGGCTCTAGCAGAC	alt_588_RC	147	108	175	134	113	143	108	139	104	149
CACGCAGGATCATAGA	alt_588_RC	40	36	31	37	16	35	33	33	33	35
TCCTATTGGGATTCAT	alt_588_RC	257	205	307	238	213	238	251	271	252	226
TTTGGGTCGAAGTAAC	alt_588_RC	19	19	12	23	9	15	20	19	15	21
GTTTATCCGCGTGCCA	alt_588_RC	27	20	34	24	18	20	22	23	21	18
GGTTAAACTGGCGTTC	alt_588_RC	10	5	9	4	6	3	3	8	7	3
TGACGCTACTGTCCCG	alt_588_RC	37	25	44	37	26	37	26	33	28	38
ATGATTTCCGGTAGCG	alt_588_RC	64	45	112	69	50	77	64	74	65	60
TGACAGACGCAGTTTT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TTGCCGCGCCCAGTAC	alt_588_RC	57	45	72	62	39	64	37	47	58	35
TTATTGCCCGTTGACA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
GTCTAACGTCCTATAA	alt_588_RC	55	33	65	47	30	36	36	39	32	42
CCGCGTCACCCGCTAT	alt_588_RC	0	0	0	0	0	0	0	0	0	0
AGTATAGCGACGTTAG	alt_588_RC	35	19	27	32	20	23	14	31	22	29
GCAACTGGTATGTTGT	alt_588_RC	28	25	44	28	31	27	24	16	20	22
TAGCGCCTAAGACAGC	alt_588_RC	27	16	19	17	16	23	20	19	16	22
AAGTGTGTGTTCGGGC	alt_588_RC	0	0	0	0	0	0	0	0	0	0
GAATTAATTTGGACTC	alt_588_RC	58	28	77	50	39	56	36	59	34	44
ATAGTGTCCTCCACCA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
GAATTTTGCCCTACTC	alt_588_RC	6	1	2	5	2	2	1	1	0	4
ACTTCAGACCATCACA	alt_588_RC	0	3	2	4	1	2	0	0	1	2
TATGATGAGTCTTTGT	alt_588_RC	5	0	5	3	1	2	2	2	0	0
ATACCCTGATGCTTTA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TCCGGTTGCAATCACA	alt_588_RC	0	0	0	0	0	0	0	0	0	0
TCCCTTTCTAGGACAG	alt_588_RC	0	0	0	0	0	0	0	0	0	0
GATATTTATCCTGAAT	alt_588_RC	35	14	49	31	26	24	19	25	20	28
CCACAGGTATACTTTG	alt_588_RC	0	0	0	0	0	0	0	0	0	0
CATCGGAGGGCCAGTT	alt_588_RC	12	16	18	9	18	6	18	14	10	19
TGCTAAATGTGTTCGC	alt_588_RC	44	23	38	34	39	29	23	19	27	27
TCCTACATGCTAACAA	alt_588_RC	7	8	11	3	8	6	7	5	14	6
TATGGTTCTCAGTCGG	alt_588_RC	16	14	15	16	8	17	8	17	7	10
TATCGGGTTTCATAAG	alt_588_RC	0	0	0	0	0	0	0	0	0	0
CCCGATCGTACACTAA	ref_76_negative	86	135	100	60	115	87	123	61	120	55
TTTTTTGATTGAGTTG	ref_76_negative	1	0	0	2	1	3	5	1	8	0
GGCCTGGATTGCGTAT	ref_76_negative	0	0	0	0	0	0	0	0	0	0
GTGACAATCGTTACAG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
CTTCCTATATCGCTGG	ref_76_negative	31	46	48	53	57	30	70	34	53	26
TGATGGAGTCAACACT	ref_76_negative	25	24	38	21	36	14	42	16	22	20
AGCTCTTGCTTACGTT	ref_76_negative	24	53	58	33	52	21	52	34	47	23
CCCATGTGTGTGGATT	ref_76_negative	0	0	0	0	0	0	0	0	0	0
GGACGCCCTTCCCTGC	ref_76_negative	64	105	92	106	88	83	83	84	106	69
TTAAGTCGTCGGCGGA	ref_76_negative	29	41	19	17	34	26	39	16	34	19
ACATGTGCACGTGCCA	ref_76_negative	47	78	66	36	49	36	48	38	86	32
CCGCCTACCACTCCTC	ref_76_negative	21	24	24	24	50	21	55	14	39	18
TCTGACATCACTTGTT	ref_76_negative	30	53	39	32	41	37	50	33	51	24
GCCAGTGGCCTCCTCT	ref_76_negative	0	0	0	2	0	3	2	0	0	0
GCGGTTACCTTGCTGT	ref_76_negative	0	1	1	1	8	3	0	2	0	0
AGGTTTAGCGACCCCC	ref_76_negative	27	28	30	23	38	35	50	18	31	25
CCTCTGTAGGTGAGCG	ref_76_negative	0	6	6	4	4	2	6	5	7	4
TACACTAGCTCGTAGG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
CTTGATAGGGAGGTGC	ref_76_negative	26	41	44	42	37	41	37	44	55	27
CCTTTAATCGCTCGGG	ref_76_negative	19	29	33	29	36	20	53	17	53	19
GCTTTACGCGGGTATG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
TCAGCTAGCCTATAAG	ref_76_negative	11	28	19	5	17	10	19	20	28	13
CGGGAGCTGGCTCACA	ref_76_negative	20	23	21	27	22	14	22	21	22	11
CACCCGGATGTTGAGT	ref_76_negative	9	11	12	4	19	8	15	7	10	8
AGTGCCGTTAGTTGTG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
GCAAGTCCAGTGATTT	ref_76_negative	16	24	11	10	19	8	25	13	21	15
TGACACGTAGAGTACG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
CTGTTTGAACAGGTGG	ref_76_negative	74	113	92	80	103	77	122	62	116	75
GTTCTGGTTCATCCAA	ref_76_negative	22	63	27	34	55	39	71	20	72	24
TATCCGCCGGATGTAG	ref_76_negative	43	70	51	38	60	41	63	36	70	39
TTTTTGCGGGCGTGAA	ref_76_negative	33	32	44	29	36	28	48	30	48	23
ACTATAGTAAAGTAAA	ref_76_negative	14	19	19	14	15	18	12	10	21	13
TGCTCCTTAGCTGTTA	ref_76_negative	0	0	0	0	0	0	0	0	0	0
GATTGTTGTATCCGGC	ref_76_negative	8	8	5	3	5	5	10	10	11	7
GTCCACCTATACAATT	ref_76_negative	4	6	1	4	10	3	7	3	5	2
AGGTAATAAAATTTGG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
AGATGAGACATGCTTA	ref_76_negative	80	160	128	100	135	97	166	87	164	88
CGGCCCGTCGTAAGAT	ref_76_negative	29	54	46	28	48	31	49	31	63	23
TCATGTACCGCAGCTA	ref_76_negative	46	85	57	54	63	56	88	48	84	65
CCGGAAGGATACTGCT	ref_76_negative	48	67	56	52	67	34	71	42	76	38
GCTGAATCCCTCAGTA	ref_76_negative	0	0	0	0	0	0	0	0	0	0
CATAGGATTTAAACCG	ref_76_negative	67	72	55	46	73	57	77	45	94	42
GGGGTTGACATCGGTG	ref_76_negative	19	32	24	19	23	13	36	25	40	15
GCAGCTAGAGATCTTG	ref_76_negative	7	19	10	6	19	8	14	18	12	7
TTGCGGACAGACCCGT	ref_76_negative	0	0	0	0	0	0	0	0	0	0
TTTTTTCATATTCTAC	ref_76_negative	36	57	46	30	47	24	58	42	43	32
TTACATCGGCTCTTAC	ref_76_negative	13	17	7	20	20	13	10	5	11	9
TATGGGCACCGTTCTG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
GAATGCATCCGTAACT	ref_76_negative	5	7	6	4	6	9	11	0	9	3
TATTCTCACTCATGGG	ref_76_negative	8	6	3	4	7	2	2	3	9	2
GCCAGCTTTATTTGTA	ref_76_negative	81	251	84	90	323	67	289	80	331	54
GCCAAACCTTATGTAC	ref_76_negative	7	15	3	5	9	5	14	10	11	7
CAGACACTTCAGGCGT	ref_76_negative	20	36	23	26	40	17	45	20	36	15
GTTTTTGTTTTCAGCT	ref_76_negative	1	6	0	0	2	7	2	0	5	3
CATCTATGCATTGCAC	ref_76_negative	22	25	17	25	38	21	32	15	34	21
GAATAGTCTCTGTGCT	ref_76_negative	15	37	32	25	55	26	38	21	33	20
GCTTCATCGAGCCACA	ref_76_negative	0	0	0	0	0	0	0	0	0	0
TCTAGCGCTTCGCATT	ref_76_negative	1	4	0	0	2	0	2	2	5	0
ACTCCACCTACAGATG	ref_76_negative	10	12	7	5	2	9	6	4	9	7
GGTTAGGACGGCTATT	ref_76_negative	7	8	2	11	6	1	1	3	7	1
AGTTTGGAAGTTCAGA	ref_76_negative	0	0	0	0	0	0	0	0	0	0
TGGCTTGCAACGCGGG	ref_76_negative	20	20	19	22	28	25	26	17	28	24
ACGTTTACCTATGGCC	ref_76_negative	12	23	16	16	26	12	27	14	14	19
CCAGGGCTCGCCTTGA	ref_76_negative	12	21	10	17	19	10	13	5	21	10
CATTACAGACAGTACA	ref_76_negative	1	4	2	2	1	2	1	1	2	7
TAGTCCCAATGACTCT	ref_76_negative	53	59	61	51	77	41	88	46	69	44
TAACGTATTTCGCCCG	ref_76_negative	0	0	0	0	0	0	0	0	0	0
TGGGTCTCTGATTCGC	ref_76_negative	6	7	5	2	4	9	8	5	8	11
TGTATGTCTTGACGGG	ref_76_negative	55	77	52	66	87	51	81	45	78	49
ACCACTAGCTTCCTCC	ref_76_negative	19	99	29	29	95	20	109	16	78	22
AGCCGTGCGTAAACTT	ref_76_negative	9	33	21	10	23	6	16	17	17	8
ACGCTAATCACAATCG	ref_76_negative	53	39	38	39	60	45	58	38	56	29
CGTTAAATGCTAGCAC	ref_76_negative	0	0	0	0	0	0	0	0	0	0
GTCGCAAGGACCATGC	ref_3332_fdr	31	91	43	33	87	26	93	26	110	30
AAGACCATGATATTGC	ref_3332_fdr	5	5	1	6	5	4	7	1	7	2
TTGACGTTCCTATCCG	ref_3332_fdr	1	5	4	3	11	3	5	1	6	2
TCGCATTTCCGCCCGG	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGATTCGCTTTG	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
TAAACGCTCGTATTTA	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCTGCGCGTTGCT	ref_3332_fdr	18	35	35	24	34	17	43	17	43	9
TAGCCCAAGGGCTTTT	ref_3332_fdr	21	18	22	10	24	5	23	12	27	4
CAATCCGCGATACGCG	ref_3332_fdr	19	42	31	29	40	21	44	17	46	23
TGTCAATGAAAGTTAA	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCGACCCACAGAT	ref_3332_fdr	34	37	31	33	54	21	79	33	47	26
ATGCGATCCAATGCTG	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCGGTACCTGTGC	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
GCTAACTGTCACTCCC	ref_3332_fdr	10	90	14	6	82	8	77	11	84	3
ATGCAGGACAGCACCA	ref_3332_fdr	28	55	26	24	45	33	49	29	39	23
CTAATTTTACCTTTGT	ref_3332_fdr	175	233	205	170	268	158	244	157	294	148
CCGTTTTAGTCTGTCT	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGTGTCTTGGTCC	ref_3332_fdr	4	10	8	5	5	11	5	6	10	6
TCTAGCGTTTGCGAGC	ref_3332_fdr	2	4	4	6	5	5	7	3	11	2
TTAGCGGTGTATTGTG	ref_3332_fdr	38	72	44	24	50	28	62	36	75	40
CAGCTCACTGAGACGA	ref_3332_fdr	14	23	11	6	23	14	20	15	29	15
CGCCGGTATCGCTTTC	ref_3332_fdr	25	30	23	30	48	11	34	30	58	22
TATGCGACATGTATCA	ref_3332_fdr	289	436	377	278	496	273	502	273	489	291
CAGCTCGCGAGCGTCC	ref_3332_fdr	6	23	12	14	22	9	23	11	27	9
GCTTGAGCTGTATGTA	ref_3332_fdr	22	47	29	20	50	22	33	16	31	17
TAGCGAGACCTCTTTA	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCTTTTGGAATCC	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTTCAAGTTGTGC	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
TGTACCTCTAGACAGT	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
TACGGAAGTCGGGCCT	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCTGTAGGTTATC	ref_3332_fdr	12	22	20	11	15	10	13	15	13	10
GTGCTTTAGTTTAGTG	ref_3332_fdr	79	111	96	63	95	69	133	54	139	70
AGGTGTAGTGCTTTGT	ref_3332_fdr	0	6	2	1	4	0	1	2	4	0
CGCAGTGTATACCCGG	ref_3332_fdr	0	7	2	1	6	0	5	2	1	2
GAGAATTCCCGAGCCA	ref_3332_fdr	0	4	4	2	1	1	5	1	6	1
TCGCATTTCCGACCGG	ref_3332_fdr	62	99	72	63	87	53	80	54	73	59
TGTCTTCCTTAGCGCC	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
ACCAACTTTTGTAGGC	ref_3332_fdr	9	16	12	11	13	7	15	7	23	5
CGGCTATCGGCAAGCA	ref_3332_fdr	113	169	135	121	142	113	158	119	215	117
GTACGCTAGCGCAAAA	ref_3332_fdr	13	22	11	10	22	5	21	7	12	9
CGCGTCCTGCGTACTT	ref_3332_fdr	5	19	9	7	9	7	17	6	23	6
GAGGATAATATTCTTT	ref_3332_fdr	47	54	54	45	51	52	66	55	73	43
CGATCGGGGCGCTCAA	ref_3332_fdr	9	14	10	8	11	7	14	12	10	11
TTGGGTTGGTCCGCGC	ref_3332_fdr	9	10	15	14	13	8	25	11	34	8
TAGTATACAATTGCGG	ref_3332_fdr	22	35	30	18	34	26	38	24	35	26
GTATTTTCACACGGGT	ref_3332_fdr	17	23	35	23	29	29	43	23	26	21
TTGTTATATTACGGTT	ref_3332_fdr	52	81	66	62	82	58	112	45	105	52
TCTTCGAATCTCTTTT	ref_3332_fdr	15	11	9	16	11	9	18	9	13	8
GAGCTCATGAACATAC	ref_3332_fdr	17	19	11	6	20	8	12	7	27	11
TAGACCTGGCTTCGCG	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
AAGGTAAATGTGCGTG	ref_3332_fdr	16	27	20	27	14	11	35	11	31	17
GCTGCGAATATGCTGC	ref_3332_fdr	11	34	17	15	27	12	30	19	48	15
GTTCCATTTAGCAACC	ref_3332_fdr	27	40	30	27	35	21	38	24	35	15
CCCCCAGTAGTAATCG	ref_3332_fdr	2	5	4	4	5	3	6	3	3	2
GTTCCTGGTCTCGCAT	ref_3332_fdr	109	184	102	94	170	87	167	87	154	83
TAAACATCACCGTCTT	ref_3332_fdr	39	51	43	32	52	32	51	31	68	41
GACCATTATTCCCGGT	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
TCGTAACTCTGGATGC	ref_3332_fdr	18	36	16	18	65	17	37	8	63	14
GTCTAGCTATGCTTAC	ref_3332_fdr	0	0	0	0	1	0	5	0	10	0
ATATATCTGGGACTGG	ref_3332_fdr	12	14	8	18	14	17	9	5	15	8
ATGGTCGATCTGACAC	ref_3332_fdr	31	59	27	24	56	18	45	20	59	18
TGCATTTGATCACGAT	ref_3332_fdr	2	6	8	1	4	7	5	4	4	2
AGCTCCGTGTCTCGGT	ref_3332_fdr	11	18	10	9	27	10	14	5	12	8
CATCCGTGATGGGTCC	ref_3332_fdr	29	61	33	24	47	36	49	24	62	33
TGGCATTGACATTCTC	ref_3332_fdr	49	74	59	44	68	52	82	50	74	41
AATTTTTCTGACCGTG	ref_3332_fdr	178	244	225	144	274	183	350	167	319	125
CAGAAGTATGGTAGAA	ref_3332_fdr	17	29	18	21	37	12	48	30	24	22
CTGCCCCTTGATTCGA	ref_3332_fdr	66	85	61	49	78	46	88	44	96	49
GCTGTAGGCGGTACTC	ref_3332_fdr	52	101	60	66	107	52	100	65	89	45
TCCGCCTCGTTACGGG	ref_3332_fdr	18	17	17	22	25	12	14	10	28	22
CTAGCATTTACTCGTT	ref_3332_fdr	59	109	72	71	88	56	115	54	106	46
TCTTAGATCCGCTTTT	ref_3332_fdr	0	1	2	1	3	2	1	1	2	2
CAGTTACCTGTGGGAT	ref_3332_fdr	6	21	8	7	15	9	24	4	16	6
CATAATGTCAAGTCTG	ref_3332_fdr	56	98	59	58	91	55	89	39	94	59
TGCCGCTTGCTTTATA	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTGTCGTAAGATT	ref_3332_fdr	36	43	51	38	47	31	57	33	73	30
CACAGCATTGGCCATC	ref_3332_fdr	40	64	50	36	83	32	61	24	84	43
ATACTTTAACCGCGAT	ref_3332_fdr	75	56	73	55	45	57	46	53	45	70
ATCGTGCGGTCCAGTT	ref_3332_fdr	51	75	57	46	73	54	87	43	94	53
GCTATGCTATCCTCAA	ref_3332_fdr	22	42	37	19	54	38	39	25	47	19
CTGACGCTTATTATAT	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGGTCATGACAGT	ref_3332_fdr	6	35	9	3	29	6	50	10	30	11
TCTCTTATACCGCAGC	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGAGAGTCGAGCC	ref_3332_fdr	30	43	52	25	43	45	51	33	56	15
ATTTGACCTTCTCGTT	ref_3332_fdr	67	104	92	79	114	64	126	51	131	66
CCAGTGTTGTTGTCTT	ref_3332_fdr	3	36	9	11	29	12	35	7	51	10
ATAGGTAATGTATCCT	ref_3332_fdr	26	49	34	29	51	29	44	28	51	32
TGGCGAAACACGAACA	ref_3332_fdr	12	19	5	13	13	8	10	15	9	12
CTCTTACGGAGTTTCA	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
ACTAGCCCTGCGATTT	ref_3332_fdr	0	0	0	0	0	0	0	0	0	0
GCACAATTGTCGTCAT	ref_3332_fdr	29	47	33	37	31	28	47	16	49	26
GCCTTTGTCATTTTTT	alt_1616_fdr	68	82	80	51	89	50	88	52	74	54
AAATTTGCCATTATCG	alt_1616_fdr	15	12	10	10	20	16	18	13	17	14
AATCGTCCTTCATGTG	alt_1616_fdr	27	28	29	12	22	22	37	30	31	19
GCAGACAGATTCTAGT	alt_1616_fdr	62	73	94	61	77	77	74	72	87	65
AGTGGCCACGCTGTAT	alt_1616_fdr	61	70	62	60	60	62	67	53	66	45
AACAGTTCTACGAGAT	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGTCCGGCGCTCG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCTCTCCTCTCA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCCAAACCTTAGCCTA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGATATTCCTCCC	alt_1616_fdr	12	16	7	9	15	9	6	8	14	4
ATGTATCACTCATTAT	alt_1616_fdr	14	30	13	11	21	14	11	16	30	14
CTTAGGGTAGGCTTAC	alt_1616_fdr	24	26	35	26	29	18	31	17	40	26
TTGACATTGCAACAAT	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GGGGAATATTTCCTGC	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCTTGTACCTGT	alt_1616_fdr	13	15	16	16	12	8	16	13	21	14
TCACCGCGGGGCAAGG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCTTACCGTAACC	alt_1616_fdr	59	123	78	82	116	63	115	59	123	57
CAGAATGCCATTCCTA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAGCTTGGAGTAC	alt_1616_fdr	89	174	103	86	169	69	168	102	184	77
CCGCTCCCGGTGAATC	alt_1616_fdr	4	3	1	3	1	6	4	0	1	2
TTTCCGCAGTCCAATG	alt_1616_fdr	10	8	11	7	9	7	12	5	18	12
AAAGGTTCTAGAGTTC	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TACTCGAACTGGCTCC	alt_1616_fdr	45	66	51	44	63	53	65	44	62	46
GAATCTCCCCCAGCTG	alt_1616_fdr	6	8	9	4	16	3	11	1	11	3
AGGATCTACGCAAGTC	alt_1616_fdr	7	19	12	5	11	10	11	9	9	8
GCCTGCAATTCAGGGT	alt_1616_fdr	1	2	0	0	2	0	2	0	8	0
CTGGCTACATGGCAGT	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTCCGCACCTCAC	alt_1616_fdr	21	26	29	19	36	24	53	34	34	13
CATGGTAGGAGTGCCC	alt_1616_fdr	18	36	29	36	34	18	39	19	44	22
ATAATGATCATAATTC	alt_1616_fdr	15	13	15	10	11	9	11	17	15	8
CCATTATACGTATGCG	alt_1616_fdr	40	90	78	66	96	63	92	70	94	32
TGATCTGGCGCATATC	alt_1616_fdr	4	3	12	3	6	17	13	6	7	5
CATTCTTCAACTTGCC	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTTTCTACTCCAT	alt_1616_fdr	18	14	9	9	12	7	23	7	23	9
GCGGTCGGCCCCAGGC	alt_1616_fdr	6	0	1	7	7	1	1	4	8	2
GGGGAGCCGACCTTTG	alt_1616_fdr	4	11	7	4	9	7	8	6	6	6
GGTCGGAAGATCAACA	alt_1616_fdr	164	161	207	176	166	159	179	141	193	159
TATTCGGTTCGGCACC	alt_1616_fdr	3	0	6	0	2	0	1	0	2	1
ACTCTTAGGGTAAGTG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CACAGCAATAAATGAA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGGACAGGAGTTG	alt_1616_fdr	136	190	145	145	187	130	186	130	164	115
CTTTTTTTAGTCTGGG	alt_1616_fdr	21	37	35	36	31	28	33	25	40	19
ACTGAAGGCAGAAACA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CATTGGCCAACCATGA	alt_1616_fdr	27	26	28	21	30	20	28	31	36	19
TAGAACGAGCAATTCT	alt_1616_fdr	11	9	15	8	6	10	13	5	22	14
CTCACCTCTTTGACTG	alt_1616_fdr	3	16	4	9	20	5	11	2	7	4
TTTTCCGCCTTTTGTT	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCTTGGAGGGTTC	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCGATGACGAATATCC	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGTTGACCCGTTT	alt_1616_fdr	32	24	30	17	37	21	23	19	28	26
CCAGTCGGGTAGGCTG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
AAAACGTCTCATGGTG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
AGGAACTTTTGCCTGG	alt_1616_fdr	9	15	30	9	12	11	16	19	18	17
CGCTGTGTCGATCTCT	alt_1616_fdr	4	2	2	3	1	2	6	3	3	3
TAATTTTTGGGAACCT	alt_1616_fdr	37	32	43	41	25	23	37	30	41	32
GTATCCTTTTCGTTCA	alt_1616_fdr	46	78	71	60	91	57	62	63	64	58
ATTGTCTTTAACTTCG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
ACGCATGGCGGGAGAA	alt_1616_fdr	53	47	74	67	53	58	63	51	54	41
GGGAAGTATCAAGGCA	alt_1616_fdr	50	49	60	36	51	49	65	36	50	49
ATTCTGTGGCAAAGCG	alt_1616_fdr	45	39	75	26	59	33	69	38	59	25
TAGCATAGTGCACTTT	alt_1616_fdr	8	12	5	6	9	2	6	5	7	4
CTCGCATCTCGCGCTC	alt_1616_fdr	29	36	46	30	42	32	32	24	25	21
TTTGAACCCCTCGCAT	alt_1616_fdr	29	38	24	22	31	19	35	29	28	21
CCTGGAGGAAGGGTAA	alt_1616_fdr	35	58	41	60	73	60	88	39	73	30
ATATCGTTCCCCAATC	alt_1616_fdr	40	46	55	41	44	50	53	59	51	42
TTTGCCAGTTGTTAAC	alt_1616_fdr	157	220	188	156	168	156	233	159	231	163
ATGGTTGACGGCCCCG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GAGTAGTTATGTTGGA	alt_1616_fdr	5	16	7	16	7	7	13	9	9	5
GGGATCGTGATGAGGC	alt_1616_fdr	23	27	31	33	36	33	25	23	35	33
TCTGGTTTAGTCTCAT	alt_1616_fdr	22	23	27	11	29	9	16	19	38	13
TCTCTTCTTTTGTGGA	alt_1616_fdr	22	16	12	15	10	18	18	8	16	16
GTGTGCTGCCCTTATA	alt_1616_fdr	21	22	32	25	43	23	38	34	37	20
GCTATTTATTCACTTG	alt_1616_fdr	82	117	96	98	156	93	133	77	145	80
TAGGTGCGCGCGCGTG	alt_1616_fdr	33	23	27	37	35	18	25	16	27	18
AGCACGCCTCGGAACT	alt_1616_fdr	25	42	25	28	34	28	52	35	40	30
TCACTGTATCCTGTTT	alt_1616_fdr	9	13	15	6	10	7	3	8	21	6
ATCTTAGCTTGCGTCT	alt_1616_fdr	16	28	21	25	18	16	37	15	20	23
TTTGGTGATTTTCTGA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GCGGGATGCCTCCCCT	alt_1616_fdr	20	43	36	18	48	18	47	12	43	19
AGTGGCCCCTTCGGGG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTATTGTGCCACT	alt_1616_fdr	140	155	185	164	179	136	196	132	191	138
CCACATACGCCGCGAC	alt_1616_fdr	13	37	13	16	40	7	34	9	42	11
GATCTCTGTCGTCCCT	alt_1616_fdr	34	49	51	27	58	27	40	41	70	39
ACCATGCGTCAGTCTG	alt_1616_fdr	16	25	23	14	30	17	26	20	24	10
AGGCTACGAGCGGTCT	alt_1616_fdr	9	9	10	4	11	12	15	9	9	5
TTCAGAAATGGTGCCA	alt_1616_fdr	11	13	7	8	13	5	5	2	4	4
TGCGTTCGGGGTCATT	alt_1616_fdr	50	35	36	26	51	27	32	33	48	25
TTCATTAATCATGCCT	alt_1616_fdr	9	17	8	19	10	18	21	14	11	8
ATGTGTGCTATCCATG	alt_1616_fdr	191	219	219	175	193	189	244	155	237	145
TTACGCTCGCGCGCTA	alt_1616_fdr	13	14	20	7	12	17	17	3	15	8
CCACTTGGGTTAGGAA	alt_1616_fdr	9	18	19	19	14	13	25	15	18	16
TACTTAATGATACTTT	alt_1616_fdr	13	8	13	12	15	11	17	10	18	10
GGGTCAACCCCATACC	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTAAAGATTTGG	alt_1616_fdr	43	58	42	40	46	39	51	44	61	30
TCTTCTGTTCTCTAGA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CACTGACGCTCTCTTG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGCCTTACATCGC	alt_1616_fdr	26	25	27	36	25	32	29	13	32	14
CCCCGTTGCGGTTCTT	alt_1616_fdr	14	43	14	11	38	12	55	8	52	14
GGTCGTTGGTATAACA	alt_1616_fdr	147	183	178	195	182	179	195	153	182	140
CGGGACCTCCTAAATA	alt_1616_fdr	13	25	26	20	33	24	27	15	28	17
TATGTCTAGAGAGGAC	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGGACTAGAACAC	alt_1616_fdr	1	8	4	2	12	3	18	1	21	3
TAATACCGTCCTATGG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CCATGAATGGTTATGA	alt_1616_fdr	17	17	23	14	19	16	20	7	25	16
GACCCAGTTCACTGTT	alt_1616_fdr	24	41	21	25	34	20	38	15	48	19
TAATCTAGGCGCGTTG	alt_1616_fdr	31	41	42	34	35	36	38	22	42	24
TCGCGGCGAGTGTAGC	alt_1616_fdr	10	9	14	8	17	11	13	9	9	11
AACGGTCGGGTTTAGA	alt_1616_fdr	10	19	14	15	31	19	25	13	25	20
TAGGCATCGCTGAGAC	alt_1616_fdr	23	18	16	16	12	9	11	20	9	9
AACTGGCACATAAGCA	alt_1616_fdr	122	147	116	127	145	104	123	112	131	103
CGAAGCCAATAGGCCA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCAACTCGGGGCGGTC	alt_1616_fdr	29	37	35	22	31	24	41	33	33	33
CTCCACGAGAACTTAT	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCGGTGGTGTTAT	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CATGGGCCTCGTACCG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
CCACGTTCTAATCGAA	alt_1616_fdr	1	4	4	1	5	1	8	3	6	2
TCTGAATTCGTATCCG	alt_1616_fdr	122	153	146	153	172	129	166	108	148	107
ACTGAAGGCAGAAACT	alt_1616_fdr	235	264	265	271	241	231	286	199	279	183
GTAGGACATTTTTTCA	alt_1616_fdr	5	5	7	5	6	5	6	4	3	3
ACCACACGGCAACTGC	alt_1616_fdr	17	50	21	15	52	11	63	8	68	18
TGTCGAATCTAACTCT	alt_1616_fdr	23	15	24	22	13	24	14	29	13	23
TTAACTACTCGCTCCA	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
TATATGTGAGATCCTG	alt_1616_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCTCTTTTCTCGG	alt_1616_fdr	18	24	32	16	18	25	14	16	32	21
TCAAGTACGGCGGGCC	ref_4894_missing	5	9	4	5	9	4	7	2	5	4
ATTCTCGTGAATCTGT	ref_4894_missing	53	102	87	61	104	56	114	56	126	53
GTTCAATATTAGCCTA	ref_4894_missing	31	24	24	16	25	18	35	15	28	17
TCTTTCATTACGGTGT	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
TCTAGGGTTATCTCGG	ref_4894_missing	9	9	7	6	12	8	17	4	9	7
CGTAGGGACCGGTGTG	ref_4894_missing	8	20	14	10	31	12	25	15	27	13
TCAAAAGGCTAATCTG	ref_4894_missing	22	27	21	30	30	20	30	20	33	21
AGCTGTAGTCCCAGGA	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
TGATGATTATTAAGGG	ref_4894_missing	14	19	7	7	10	4	12	12	14	8
CTCTCTTCGTGGCGTA	ref_4894_missing	15	17	6	3	12	7	16	8	13	6
AGAGCCAACGGAACAT	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
TGAGCCAACGGAACAT	ref_4894_missing	97	158	111	85	151	60	163	58	167	82
GTTGGTTTCTTTGTCC	ref_4894_missing	85	90	82	71	82	48	86	74	72	70
AAGTTTGTCTCAACTC	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
GGAACGTTATCCCTGC	ref_4894_missing	12	9	12	14	9	4	28	18	18	13
TGCACATTGGCCGGAG	ref_4894_missing	12	27	13	16	19	15	20	13	24	5
AGAGCTTAAGACCACG	ref_4894_missing	6	8	15	9	19	6	10	9	18	8
ATTTGCCATTGTTCTT	alt_4894_missing	1	4	2	3	4	3	6	1	4	2
CACTTGGGGGGGCAGC	ref_4894_missing	15	28	21	13	18	18	35	22	24	13
TCGTTCTCGCTTAGCC	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
ATTGCCTGGTTTTTTT	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
TCAATCGTGAACGTTA	ref_4894_missing	78	100	87	69	112	75	128	58	108	61
GTACAATTTAGGATAG	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
ACGCTGTGCTCGTAAA	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
AGTACAGGGATAATCA	ref_4894_missing	7	4	5	4	0	4	5	2	10	1
ATTGTCTTATGTGGGG	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
GATTCTGGCTGGATGA	ref_4894_missing	23	49	37	31	45	32	58	30	43	29
CTCCATGAGGGACTCT	ref_4894_missing	7	12	8	13	13	7	13	7	14	2
CAACGGAACTTTCAAT	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
CTTCTCACCTATGTTG	ref_4894_missing	24	73	24	32	48	23	76	34	77	26
CGGGTAGTCTAAGCGC	ref_4894_missing	3	11	9	11	10	4	9	8	19	7
GACAGCTGGGGGCTTG	ref_4894_missing	0	5	6	3	3	2	7	1	5	0
TATACCTTAATCTTTC	ref_4894_missing	65	90	97	89	102	94	105	65	98	65
CCCGCAGGTTCGGGGT	ref_4894_missing	14	40	33	29	36	22	41	25	49	17
CATCGGCGTTAGTAGT	ref_4894_missing	9	15	8	8	15	12	10	17	12	5
TTTGGCGTGAGATCAG	ref_4894_missing	28	32	25	15	50	29	55	25	39	12
CGGCGTATCGATCGCT	ref_4894_missing	5	22	6	14	15	14	17	9	11	13
CATCTGCGATGCCGGA	ref_4894_missing	0	0	0	0	0	0	0	0	0	0
CCGTTTTTCACGCCGA	alt_6058_new	66	178	84	63	174	53	219	67	201	62
TCGGTCTGGGTCCTAG	alt_6058_new	45	60	54	52	67	42	65	54	52	50
GCTTTACCGATGGTCT	alt_6058_new	26	24	34	25	27	34	28	29	47	28
GTGGTCATCATTGTAT	alt_6058_new	131	169	144	138	147	116	135	113	170	114
TGTGGTTCAGATTCTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TGCAGCTGTTTTCCAT	alt_6058_new	38	64	81	47	54	52	72	43	73	39
TGGTTCACGTCTCTTA	alt_6058_new	1	5	3	1	8	2	2	2	1	2
GTCCGTGTAGGAACAT	alt_6058_new	107	108	96	117	95	91	93	86	108	101
GTAGTGCATGATGTCT	alt_6058_new	36	20	23	23	13	19	22	22	25	24
ATTTTAGTGCTTATTG	alt_6058_new	6	7	11	7	6	5	11	2	13	7
ACTTCAGCTTATTGAG	alt_6058_new	21	20	33	21	27	22	33	24	32	22
TTGCAGCTCTGCGTCT	alt_6058_new	14	19	27	18	28	21	32	21	22	10
TTGGAGCAACCCAGGT	alt_6058_new	29	27	29	21	18	24	35	11	44	22
TACAGGGGCATATATA	alt_6058_new	39	25	35	25	34	27	40	25	33	33
TAGGTTGCTTGTTCGC	alt_6058_new	44	59	67	44	51	49	43	45	38	52
AGGTCAGTGATGACAA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TGCAATTTTATCTTAC	alt_6058_new	87	62	158	98	96	97	83	80	86	78
TGCACCAGTGCGTTTT	alt_6058_new	28	19	30	28	19	27	29	26	34	21
AATCGATCTTCGGTGG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GTTGTAATAGTATAAA	alt_6058_new	3	10	11	9	21	8	4	8	7	6
TATCCTCCTTTACGCG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GGGGAGCTGGTGGCTG	alt_6058_new	32	26	28	20	13	13	31	12	21	16
AAGGTTCCCGCTGAAT	alt_6058_new	38	51	60	51	49	28	50	48	55	48
AGTATTCGCTCTGCTT	alt_6058_new	3	7	4	3	1	5	5	1	6	3
GACATGCGTGGCATAC	alt_6058_new	99	119	124	111	102	103	96	99	96	113
ACGTGGAGAGCCAAAG	alt_6058_new	2	3	4	6	3	3	6	0	5	1
CTCAGCGCGTCTTCGT	alt_6058_new	40	39	26	29	39	37	34	36	33	29
GTTTATTCGCATTGAG	alt_6058_new	43	51	25	37	46	39	53	20	50	25
ATTCCGTTTAGGTGGC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ATCTTCTCAGATAGCC	alt_6058_new	6	4	8	4	4	2	2	3	7	3
ATCCTGGCCCGCTTGA	alt_6058_new	12	13	15	20	9	13	14	10	8	19
CCGGGGAAAACTTGAC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TTTATTGAACACAACT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GCCTGTGGCCCGTCTT	alt_6058_new	42	54	53	49	64	41	54	47	56	38
CAACCAGATTCGGGAC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TATCCGCGTCTCTGTG	alt_6058_new	10	16	11	18	11	10	29	7	15	12
TGAGCTAGCTGTCCTT	alt_6058_new	27	35	34	37	38	17	33	16	18	27
TTCAGAAGCTAGCTCA	alt_6058_new	17	15	20	17	8	15	22	15	24	8
GTAGACCCACGTTTCC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TTTATGTTGGTGATTC	alt_6058_new	17	19	34	22	16	9	19	21	15	23
TCACGGTTTGGAACAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TCAAAACTAATTCACC	alt_6058_new	27	14	16	12	23	33	27	27	17	18
GTATTGTGTTTTTGCG	alt_6058_new	3	5	12	6	7	6	5	5	6	4
CCAGTTACGGTCAGCG	alt_6058_new	24	44	33	19	57	23	44	23	50	40
AGCTCTTCACTACATA	alt_6058_new	89	91	107	81	73	93	75	87	98	79
TCTAATGGTAGCAAAA	alt_6058_new	18	20	33	16	22	19	23	18	17	13
CATTGACTTGGTTTGA	alt_6058_new	5	12	14	11	12	3	4	3	13	5
AGTTTGTAATCCAGTA	alt_6058_new	5	3	2	5	4	7	3	1	5	4
AACATTAGTACTTAAG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GTCTGCTCTCACTTCG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ACTTATAGGAGTTTGT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GGAAGTACACTGAGTG	alt_6058_new	55	69	63	61	90	43	71	47	83	37
ACTTGGACTGTTCCGC	alt_6058_new	43	39	41	27	43	24	41	33	59	19
CTTCCAGCCTCCCCAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
AAGTGGTGTTAATATT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ACCCTAGTTGAAGGGC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GGTCTCATCGCGAGCT	alt_6058_new	117	106	123	115	103	100	85	75	107	85
TGCATACATAGGGGTA	alt_6058_new	33	37	48	46	31	28	29	34	29	31
GTTTGATGATCTCAGA	alt_6058_new	23	31	21	27	25	29	22	19	21	21
GGTAACAGATGTTGGT	alt_6058_new	10	11	10	8	12	11	8	13	12	7
TCATTCACACGATTGG	alt_6058_new	16	18	10	9	5	10	17	11	12	4
GTCCATCCAATCTTTT	alt_6058_new	27	20	31	29	27	20	26	24	20	34
CAGACTCCGGGTGTCC	alt_6058_new	81	95	90	82	92	69	104	74	91	84
TGTGTACAACTCTTGT	alt_6058_new	35	52	33	38	52	38	34	41	52	35
CTCTCATGCCTTCACC	alt_6058_new	6	6	16	9	9	9	6	11	8	6
ACTTTAAGCGGTCGTG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CTAACTATCATGGGTC	alt_6058_new	1	7	3	5	6	9	8	8	3	3
GATCTGCTCATTCCAC	alt_6058_new	6	3	4	6	6	6	7	7	13	6
TTTACATGGTTTTGTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GTTTAAGTACTTCTGC	alt_6058_new	6	9	8	8	10	8	15	13	10	10
TTTACTCGTGGAGCTG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ACACGGAGGGGTACAA	alt_6058_new	24	51	53	56	58	31	55	46	46	44
CCGTTTGTTACATTCG	alt_6058_new	41	49	49	48	49	36	60	30	59	28
CGAGGGTTTGTGTTTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TACTACGTTTGTTTCA	alt_6058_new	76	81	65	58	68	41	69	56	70	62
TACGGCACACGGGATT	alt_6058_new	67	78	60	66	62	64	77	47	64	56
ACGCTTCTTTACTCGG	alt_6058_new	70	71	77	61	69	65	74	81	78	63
GGTTGCTGGACGTTAA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GCGGGGACTCGCATTG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TACGCTGACATTTTAT	alt_6058_new	104	86	151	112	90	120	106	99	150	104
ATTGCTACTAGAGCAG	alt_6058_new	2	4	4	7	7	3	4	2	3	3
TAGTTATTTCCCATAA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
AGCCTCCAGTGTTGAT	alt_6058_new	6	7	5	1	5	1	4	9	7	2
TGTGATCGGTAGGGTT	alt_6058_new	41	61	58	56	63	53	75	66	53	52
GATCGCTTTTTGCCCC	alt_6058_new	10	9	11	9	16	16	3	17	9	19
ATCCTGCTGTTACGGG	alt_6058_new	61	73	77	68	50	52	66	40	59	49
CGTGTTTGCCGAATAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GTAGCAGCGTACGCTT	alt_6058_new	42	53	53	33	46	39	49	38	44	34
GGGTTCTACCTTCCCT	alt_6058_new	4	11	8	8	13	4	19	4	12	6
GGTCTTGAATGATACT	alt_6058_new	72	71	75	64	85	45	71	59	79	41
CATTGTATATGGCCCT	alt_6058_new	4	12	7	9	4	11	7	3	8	6
TCACCCAGCACGATGC	alt_6058_new	53	40	39	37	25	37	37	32	46	30
AATTGCTCGTATTCAG	alt_6058_new	0	0	0	1	0	0	0	0	0	0
AATTTCTCTCTCGCAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TACTTATTACATCCAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GGTTGTCCGTAAATTT	alt_6058_new	29	28	44	20	36	36	34	35	38	36
GATTTACAATTACTGC	alt_6058_new	8	9	17	9	8	6	13	9	2	8
CCTTGTACATAGGACC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TAACGACAATCGGTAC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GCGCGCTCGCAGCCAG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CCCCGCGGTGCAAGAT	alt_6058_new	2	6	4	9	7	4	1	6	6	7
TATTCCCAGGTACCTA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CCTCTTTTTTTATGCT	alt_6058_new	34	44	45	45	49	44	33	43	50	49
CAATTAATTCTGCTTT	alt_6058_new	36	30	52	47	42	41	34	41	38	29
AGTGAAGCCAGGCCAC	alt_6058_new	32	26	42	28	30	26	27	17	38	19
AATCGTGGAGGTACTA	alt_6058_new	13	14	21	21	24	10	29	17	24	13
AGCCCGGGACCCTTTA	alt_6058_new	27	32	51	31	43	33	42	19	45	22
TTCCTCGCCTACCGGA	alt_6058_new	44	55	69	40	60	37	41	43	61	46
GCCGTTCGATCATTAT	alt_6058_new	26	41	17	16	33	20	35	24	30	26
GTCTCGCTTGCCAAGT	alt_6058_new	77	91	87	70	86	71	100	77	103	68
TCATTCTTAATTTAAG	alt_6058_new	6	4	9	3	8	4	6	3	6	2
CTTGATGGCGAATGTT	alt_6058_new	31	26	31	32	32	42	36	25	49	21
CTGCTACCTAGACTCA	alt_6058_new	155	222	190	168	238	177	234	149	259	138
CCACCCGAATAACTCT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CCCGTCACCCATCTAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CAACTGTAAACCAACG	alt_6058_new	116	123	148	128	136	94	139	128	171	69
CTCTTGCGCGCTGGCA	alt_6058_new	0	7	2	5	5	0	3	4	7	4
CGAGCACATGCTCAGG	alt_6058_new	32	31	46	25	30	26	26	29	28	28
CAGTGCTCCTTACTCT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GGCACCTGATACACTA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CCACTATTGGTCGTTG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CTAGGTATGACGTTGG	alt_6058_new	8	22	20	9	9	13	12	18	20	17
CCGTTACGATGTTCGG	alt_6058_new	46	197	67	55	173	45	185	47	170	45
ATATTATCATACATAA	alt_6058_new	30	22	31	35	28	30	28	24	23	30
TGCTCCTTAACTAATG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TCTGCGTAGTTCATTC	alt_6058_new	11	19	6	13	9	4	7	9	11	11
GTTGGTGTTATTCCCC	alt_6058_new	13	14	18	17	11	28	10	11	18	15
CCCTTTTTGCAAGAGC	alt_6058_new	13	15	19	14	10	18	14	12	13	18
TTTTCCCGCCCGTTCA	alt_6058_new	45	56	83	64	77	41	63	58	48	60
AGTCGGATCTAGAACA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CTAAGGCTAGCCAGCT	alt_6058_new	42	38	59	41	44	47	45	52	61	37
TGTATAAGTATCTCAC	alt_6058_new	30	30	39	36	33	27	33	27	43	34
GGTGCGCATTGCATCT	alt_6058_new	14	8	15	13	9	8	10	8	7	11
ACATGAAAGTGATTGA	alt_6058_new	49	62	62	65	51	47	48	43	65	45
CAAGGGTTGCTATGCC	alt_6058_new	2	5	4	2	5	0	4	2	5	2
CATGAGAGTTGGACGG	alt_6058_new	28	22	46	40	37	37	31	28	46	31
TTGCGTCCCTCGAGCG	alt_6058_new	10	10	12	15	13	9	17	8	11	12
TGTGACGCACTTGTTC	alt_6058_new	15	20	23	12	17	14	24	23	26	19
TAGAACCCCGTTGTTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TTAGTCGTTTTGTTTT	alt_6058_new	49	56	52	61	71	52	51	45	68	33
TAGCATTGGACTTCTT	alt_6058_new	49	45	54	61	45	41	62	51	51	42
TAATTTCAGTATTAGA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GTTGTGGAGGAACCGC	alt_6058_new	53	50	73	54	59	64	65	55	51	50
GCGAACTACTCTAGTC	alt_6058_new	14	24	16	19	15	17	20	8	20	21
CAGGCGAGCATATCAC	alt_6058_new	13	10	16	9	14	12	14	15	18	13
GTACGTACTATTTAAT	alt_6058_new	3	0	0	0	0	0	1	0	0	0
CTGGGCCCCGGTCCAG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TATGCTCGACTTCAAT	alt_6058_new	57	68	82	46	82	62	84	58	78	75
GGTTCTGGCGTTAATT	alt_6058_new	13	13	21	17	12	14	14	13	16	11
CTGTGGGGTCCTAAAT	alt_6058_new	162	172	238	167	157	145	167	202	205	150
GCTTAAGTTTTTTGTG	alt_6058_new	21	21	24	17	25	14	23	13	9	12
GCCTTGCCACGAGGGT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
AAATGTGAGCCTACTA	alt_6058_new	45	27	53	42	53	40	44	34	45	32
TCGAGGTCTAGAATAG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
AAGCGGTGGCAACTAC	alt_6058_new	58	48	63	68	63	53	72	60	72	57
GATTAGAAAGATCCCG	alt_6058_new	38	42	47	31	35	36	50	29	38	40
CTTATTACACTTTCTT	alt_6058_new	35	43	24	17	29	30	24	33	31	22
ATTGTCCAGGCATGTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TCACTGCCCGAAGGCT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TGTTTTGGCCCTGTCT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CGGTGAGCTCCGAGGC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GGCTTTGATTGAGTTG	alt_6058_new	7	10	18	11	14	3	9	5	17	10
CTCGGGGTGTTTGTGT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTTCTCCTCAA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
AAAGTGTTCTACTAAT	alt_6058_new	14	24	30	18	24	19	26	23	22	23
CGCTATCTGAGTGGCT	alt_6058_new	14	14	24	16	16	14	34	21	27	11
CAAATCTGCGGCCGAT	alt_6058_new	53	70	74	67	76	73	64	64	65	46
CAGACGACATATTTTT	alt_6058_new	81	72	105	82	84	76	52	58	66	67
TCCATTGATGATAGAG	alt_6058_new	24	29	25	24	41	13	40	22	37	15
CAGATCACAGTGCGTA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TGTCTCTCAGGAAACA	alt_6058_new	39	62	49	41	56	62	59	31	67	43
TCCTTACTCGGCTGCA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
AGAGAGCGTCTTATTT	alt_6058_new	44	48	46	50	47	29	56	50	50	54
ACATGTTGGGCAGTTG	alt_6058_new	5	10	8	7	7	9	9	10	12	4
TTTCGACTATAACTTG	alt_6058_new	34	26	28	34	37	25	32	29	30	23
CCGCAATATTTATAAA	alt_6058_new	9	13	26	20	17	13	20	18	14	9
TTTCGTACTTCCGTTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GTAATGCGATCTTGCG	alt_6058_new	30	26	35	37	19	36	27	33	25	23
AGTGGACCCGGATTTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CTCTCCTAACTTTCAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ATATTGTTCTCAAGCC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TTCAACTTTAGGCGGA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TAGTACACTTTTCGAT	alt_6058_new	33	41	67	38	52	33	66	37	50	31
CTGTCGCTGGGAATAA	alt_6058_new	17	11	12	16	11	7	12	10	12	14
GGTTTTAGGGTTCTGT	alt_6058_new	15	24	24	18	28	13	27	20	20	11
GCTCTTTGATTGGGTC	alt_6058_new	12	22	25	21	21	20	19	21	22	8
AGCCGGGTTATTCCGC	alt_6058_new	10	8	6	7	13	10	6	18	20	4
GTATTTAATTTAAATA	alt_6058_new	27	24	27	15	23	17	25	23	27	23
TGGTACGCATTCTCCC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ATGTCCTGCACATATA	alt_6058_new	20	19	28	13	19	18	21	11	15	11
TCACGTAGGTAGTTAA	alt_6058_new	29	40	58	42	61	45	51	60	64	46
GAGAAACCGCCATGTC	alt_6058_new	53	46	45	45	27	44	28	33	41	27
GTGAATTGCCGATTTA	alt_6058_new	28	41	46	30	52	31	43	19	29	28
GAAACGATTAAGTGTA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CTCGGGTGGGCATGAC	alt_6058_new	112	96	159	126	121	135	106	107	137	133
TTTTAGAGGAATTCGC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TGTTCTGGATCTTTAC	alt_6058_new	39	56	37	31	50	39	62	42	47	33
CGCCACGCCGGTCGAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CAGCTACCTAGACTCA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CTGCTCTTGACCTTTT	alt_6058_new	29	45	42	33	47	26	42	41	56	31
TTCTTATAGGGTTGAA	alt_6058_new	164	193	199	175	147	150	160	153	180	157
TCTTCCCTTCTACTAA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TACTTCAGATGTATTT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
AACTTTCGGTCGCGTA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CGTAAGACGTTGCTGC	alt_6058_new	35	35	37	24	28	28	35	33	23	26
TGTACAGCATAGTACG	alt_6058_new	10	7	5	16	14	21	8	7	17	6
TAATACCCTCTGTGAT	alt_6058_new	43	46	43	45	61	37	39	29	40	41
CTCCCGGGGGAAACGT	alt_6058_new	17	27	27	14	21	20	20	17	24	13
CCGCTTGGCGCGCTTC	alt_6058_new	42	52	64	40	58	33	59	50	50	39
AAGCGTCCCAAAACTC	alt_6058_new	5	10	12	10	11	9	6	9	13	8
TGTATGGTGTTTACTT	alt_6058_new	68	49	72	71	39	46	56	69	62	52
TAACTTCCATCCAAGT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ACACGACTTTAAACTT	alt_6058_new	58	48	54	43	43	47	56	48	45	57
ACAGACGTTGCCGCCC	alt_6058_new	3	3	3	0	6	1	2	0	1	7
TTTCTAACTCCAATGT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
ACCGGTCGTTTCCGTT	alt_6058_new	4	19	3	2	16	3	10	2	14	1
GGGTGTCCTTGCATAG	alt_6058_new	40	49	59	46	52	38	50	58	71	41
AGCCCCCCTGAGACCA	alt_6058_new	17	8	15	15	16	12	9	20	12	14
GTCAAACTTGGTGCTT	alt_6058_new	17	12	25	15	18	18	26	18	26	19
CGTTGCGACGCCGCGG	alt_6058_new	0	4	4	0	9	0	11	3	11	5
TATAGTGTTTCGTCTA	alt_6058_new	8	13	15	14	9	9	13	10	8	8
ACTACGGCTTCGCCAT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CGTCAATGTACTCGGT	alt_6058_new	30	62	48	40	51	41	49	28	42	34
ACACTTAGTCCTTGAC	alt_6058_new	22	19	33	21	31	30	29	18	31	34
AGCAATACACCGCAAC	alt_6058_new	11	4	14	11	6	5	10	14	8	7
GCTCACGGTTCCGCCT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TCTTAGCGGTTACTTC	alt_6058_new	13	5	12	13	13	7	5	13	17	9
ACCTTGACACACACCC	alt_6058_new	0	8	2	2	0	0	8	2	4	1
GATGTGCCTGGCGTGC	alt_6058_new	175	146	198	142	163	178	162	170	190	149
GACGCAACTGCTCGCG	alt_6058_new	44	42	59	39	57	43	49	49	49	41
CGTATCTTGGATAGAG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
TTACACGTTCACCTTC	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CTCGTGCATGATTTTT	alt_6058_new	31	65	58	40	40	37	52	23	47	36
TCATTGTTGGATGCAT	alt_6058_new	19	28	31	46	38	32	38	30	32	31
TGAACTGTTCATTATA	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CCGGTCCTAGTAAATG	alt_6058_new	30	33	29	36	32	28	27	28	37	20
GTGCACATCCTTGCCA	alt_6058_new	23	27	25	13	21	16	19	22	27	21
TCGTGTTGCTAACTGA	alt_6058_new	7	5	4	11	8	7	4	6	2	9
TTCTTCGCGGCAGTCA	alt_6058_new	40	34	18	33	21	25	33	29	31	24
AAGTTTCGAGAAACAC	alt_6058_new	37	39	53	29	28	40	43	26	35	42
TTAAGGGTAGAAAAAT	alt_6058_new	37	25	43	32	30	34	43	27	31	37
ATGCCCCACACCACTC	alt_6058_new	22	29	45	21	27	33	40	26	31	33
TGTTTGTATCCTTATT	alt_6058_new	19	26	26	17	20	20	18	32	21	23
CTCTTTATTCTCATGC	alt_6058_new	55	47	50	50	51	58	47	54	65	40
TTTCGGATCGCAGAGG	alt_6058_new	0	0	0	0	0	0	0	0	0	0
GTTCACCTAATGTCGG	alt_6058_new	6	6	13	7	4	6	6	5	7	7
TTGTAGCTTGTGCGCG	alt_6058_new	6	8	9	5	10	5	10	8	8	5
GTTCATGTTGCGAATT	alt_6058_new	0	0	0	0	0	0	0	0	0	0
CAATAGCGGGGCGAAC	alt_6058_new	39	60	49	40	39	39	26	39	35	30
TGAAGAGACATGAGCG	alt_6058_new	12	14	6	8	12	13	14	14	16	14
TTGTGCGGACTTCGTT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CCCAGGTCAGGGCTAT	ref_5971_new	14	8	11	4	6	12	11	7	4	3
GGGTATCACCTGCAAG	ref_5971_new	21	16	17	21	27	20	27	35	22	19
ATCTCAAGTTTACAAC	ref_5971_new	11	6	11	16	21	16	5	10	21	13
GCCCCAATAGGCTTCA	ref_5971_new	7	1	3	1	3	2	2	4	5	0
TTGGGCACTCTCACCT	ref_5971_new	26	30	35	36	26	35	29	23	28	33
GGTTATAGTCCCCCCA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
ACCCTCTTCCAGAGCT	ref_5971_new	150	161	187	157	159	124	147	107	162	116
CATCTACCGGGTCTAG	ref_5971_new	39	34	48	38	35	29	26	46	45	32
TATTGGGGGGGTATAG	ref_5971_new	31	29	26	25	17	22	25	17	26	29
TCTAGCCCTAGAGACT	ref_5971_new	29	28	24	38	30	17	55	22	46	20
CTTCGATCTCATTCTT	ref_5971_new	48	26	48	36	34	32	32	38	32	33
TAATCGGGTTTGCATA	ref_5971_new	11	16	18	18	9	9	16	7	13	9
GCGTTCTGGCTGTTAT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
TTCGCTGATCAGATTT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
ATTGCCTTTCTTACGA	ref_5971_new	20	17	10	10	12	19	16	15	27	11
AGGTTGTTCCTAAATA	ref_5971_new	18	9	19	13	11	20	26	11	25	14
GACGAGCGGACGCATA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
GCGCGAGTGTTGACGT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
TGTCAATGGACCGTGG	ref_5971_new	29	23	48	22	39	28	27	17	28	24
CCTCGAACTTTTTCTG	ref_5971_new	61	38	35	51	37	51	49	52	38	48
TGCTGTATCCTATTTT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
GGTGTGCCCCGTAGTC	ref_5971_new	7	2	23	8	7	6	13	6	11	6
CGCGTCCTGCTCAATT	ref_5971_new	8	8	7	6	6	9	8	8	7	8
CTTTCCTGGCGGAACT	ref_5971_new	21	19	40	39	28	22	28	25	37	24
TGAAATATAATACCTA	alt_5971_new	52	30	57	47	34	42	28	37	33	41
ATGGCCTCGCCCCTAC	ref_5971_new	0	0	0	0	0	0	0	0	0	0
ATTGTAATGTTTTTTA	ref_5971_new	59	35	58	51	42	70	31	45	52	45
ATGGCCTCGACCCTAC	ref_5971_new	95	128	101	98	105	101	122	109	122	95
TTGTTTGCATGAGTAC	ref_5971_new	71	61	82	53	70	73	77	55	96	64
CGAAGGACTGACCAGC	ref_5971_new	19	10	29	12	19	26	12	15	12	24
TGGCCATGCTAGCGAG	alt_5971_new	83	87	121	94	85	104	103	69	80	84
TTGTGCTATGTATGAC	ref_5971_new	134	163	188	148	152	155	145	130	175	113
AGGGCTTATTTTTCCG	ref_5971_new	15	29	22	27	15	22	19	17	23	17
GTCCCTGTGTGTCTCC	alt_5971_new	201	168	217	218	154	191	179	158	193	155
ATGCCCTGACTCCAGC	alt_5971_new	71	83	103	88	74	92	82	68	100	68
TCTCTCTGCACCTACG	alt_5971_new	330	304	440	387	360	330	352	370	354	309
GGCGACCACATATCTC	ref_5971_new	53	55	58	66	47	46	40	51	41	45
CTCAGAATCAAACGTT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
TTTATGTCTACGAGGC	ref_5971_new	11	13	8	14	15	12	16	5	14	7
TAGCGACCGCAAGCAA	ref_5971_new	6	6	6	8	7	12	3	9	4	13
ACTGCTCGCTCCTGTC	alt_5971_new	28	49	44	32	23	24	37	24	33	36
CCACAATCGGCGTTCT	ref_5971_new	11	12	11	13	8	4	5	8	11	7
CCGCCCCGCTTTGAGA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CACGAATGGTACCAGT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
TAAGCCTATCTCCACT	ref_5971_new	23	15	21	22	29	25	22	25	29	25
TAACCGGTGGTCTGTC	ref_5971_new	0	0	0	0	0	0	0	0	0	0
ACGTCGTGTACCGATA	ref_5971_new	18	19	39	12	20	18	32	14	27	16
GGACGCTAGTAGTCTT	ref_5971_new	13	20	26	33	21	24	21	14	15	13
ATTGTCGACCCCACTA	ref_5971_new	71	50	76	87	54	73	47	54	52	63
GTAGCATCGTCACTCT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
ATTGTGTGACTACCAG	ref_5971_new	42	36	48	43	38	25	34	40	38	21
CGCATATGGCGCAGTA	ref_5971_new	18	11	29	17	14	26	13	23	15	18
CGATACACTCCGTTCC	ref_5971_new	6	27	4	6	30	5	32	2	34	2
ACTTCTGACTTGTTTA	ref_5971_new	26	16	28	21	12	21	15	13	17	22
CGGAAACTTTAGGCTG	ref_5971_new	24	16	25	30	29	18	23	26	30	15
TGGGCCCCTCACTCTT	ref_5971_new	65	44	63	78	47	68	48	71	69	54
CGGAGTCATTTGTCTG	alt_5971_new	18	8	28	24	20	18	14	12	22	13
CGCGGTCAAGGTAATT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CCCCAGCGTCGTTTCG	ref_5971_new	21	37	34	26	43	28	40	13	41	23
AATCGTCCACAACGTC	ref_5971_new	15	38	40	36	39	26	23	25	22	26
TCTGCAAGTCAGGGGA	ref_5971_new	54	65	60	39	34	60	44	51	62	68
TCTCCTGCAATGTATT	ref_5971_new	39	27	60	38	33	41	32	31	21	41
ACTCTCTGCACCTACG	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CTAATCGCCTTAAGAA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CACCGGACTCCACGTC	ref_5971_new	40	107	61	57	96	45	116	47	95	44
GGAGAAGTCTAGCTTG	ref_5971_new	0	0	0	0	0	0	0	0	0	0
ACCCCCACGGGCGTTT	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CGGGGACTAAGAATTC	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CTGTGTCAAGTAGTAG	ref_5971_new	164	171	240	173	206	164	232	153	244	172
GTTCTTACATCGGCGC	ref_5971_new	29	25	28	24	22	19	19	23	27	25
TGCCTTCTCGGAGCAT	ref_5971_new	46	40	79	74	50	70	54	63	57	55
TTGTGCGACAAGATGG	ref_5971_new	0	0	0	0	0	0	0	0	0	0
CACAAACGCCTTTTCA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
AATTATCACTGTTTCC	ref_5971_new	83	92	115	92	69	79	64	97	103	96
CCACGATCCATTTTGA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
GGTCGGGCCTTGAGCA	ref_5971_new	8	5	15	11	5	4	8	8	6	7
CTCGTGCGCAACGAGC	ref_5971_new	37	57	59	54	53	57	59	40	48	46
TTAAAAACTGTATAGA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
GGTTTAATTCTCTCTA	ref_5971_new	77	46	97	95	47	61	70	94	54	79
TCATCCGTTCGTCTGG	ref_5971_new	13	21	15	11	8	14	15	14	19	10
TTTTGCCTAGTTTAGG	ref_5971_new	24	17	26	22	27	29	19	21	24	26
CACCTAGACGATACCA	ref_5971_new	21	22	19	24	24	40	24	19	29	19
GCGGCTAGATTCCGGC	ref_5971_new	203	155	243	182	150	177	173	169	176	171
CAGATCTGGATAGGGT	ref_5971_new	35	48	41	54	38	25	30	30	38	39
GTGGTCCGAGCTAGAA	ref_5971_new	0	0	0	0	0	0	0	0	0	0
TACGCAAGGTTCTTGT	ref_5971_new	39	50	72	58	46	53	47	53	56	39
AGTTCGGCTTATGTGC	ref_5971_new	14	24	14	14	26	20	29	13	25	8
TACCCATTTTCAAGTA	ref_5971_new	1	6	2	7	6	2	5	6	8	5
CTAGGTGCTTGACAGT	ref_5971_new	22	24	27	20	25	20	31	13	33	15
AAATACCGTCTTTGGA	ref_5971_new	46	37	56	46	46	46	31	54	40	44
GTCTTTTGGCCTGTCT	ref_5971_new	84	66	107	89	73	73	84	80	100	87
TTCCAACGTATGGACC	ref_5971_new	29	24	20	24	11	16	20	13	15	23
GATTCTCGTGTGCTGT	ref_5971_new	3	7	6	7	7	4	9	8	9	5
TGCTTATCGTGTGTTT	ref_5971_new	18	12	16	18	12	11	16	13	12	16
ACAACCCCTTTGACGG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
TAACAATGGTCTGTCC	alt_6055_new	0	0	0	0	0	0	0	0	0	0
TTTCGGTATCCAAAAT	alt_6055_new	18	47	38	25	44	22	58	23	58	22
CGTGTCATAGATGGTG	alt_6055_new	0	0	0	0	0	0	0	0	0	0
CCCTTTACGATGTCCG	alt_6055_new	0	0	0	0	0	0	0	0	0	0
ACGATTAGGAAATCTA	alt_6055_new	38	71	49	41	58	30	59	35	73	27
AATATCTGCTAAGGCG	alt_6055_new	37	67	36	49	64	35	72	23	67	42
GCCCGTGTGTTGGAGG	alt_6055_new	11	14	11	12	22	7	13	5	16	2
TAGACGGTTCTCCAAG	alt_6055_new	90	170	117	106	189	80	183	62	171	69
ATCCTAGTTTTTTTTA	alt_6055_new	27	59	30	22	59	23	67	18	45	28
ATACGTTCCAGGCGTC	alt_6055_new	12	7	6	6	9	4	11	2	11	11
ACTTCCTGTGATGTTC	alt_6055_new	0	0	0	0	0	0	0	0	0	0
CCGCAAACAATGAGTT	alt_6055_new	19	33	20	18	27	18	32	17	34	8
TGTGTCCCTACGTACG	alt_6055_new	0	0	0	0	0	0	0	0	0	0
TGACAGGAATCACTCA	alt_6055_new	8	23	12	10	18	7	28	10	20	7
CGGAAACGGCGACCAC	alt_6055_new	6	4	3	8	4	4	8	4	12	12
CTTCTAGGTCTTAGAC	alt_6055_new	2	1	1	1	1	0	1	0	1	1
TGCTGTGAAGATGCCT	alt_6055_new	0	0	0	0	0	0	0	0	0	0
CCTATTAGAACTAGCC	alt_6055_new	25	42	29	17	40	20	53	22	52	11
AGTGGGGGAATCATTA	alt_6055_new	4	13	8	9	15	7	13	7	10	8
AGTTACTTTCGCTCCG	alt_6055_new	1	2	0	2	1	3	9	0	3	1
ATCCTTATTGACAGAC	alt_6055_new	10	32	6	12	14	9	29	7	25	5
CCGCTTAAAGTTGCAG	alt_6055_new	5	16	10	1	26	2	22	6	41	5
AGGTTACATCGTTTTC	alt_6055_new	114	155	122	122	144	103	204	104	172	79
AATTGTATTCGCTGAT	alt_6055_new	18	45	33	20	47	34	44	19	43	22
CGCGGCCTAGGAGCAC	alt_6055_new	87	179	136	105	195	119	190	102	190	106
CTAGTAGCGTCTTGAC	alt_6055_new	152	265	167	168	306	162	314	127	302	140
ATCGCTGGAATGATAG	alt_6055_new	7	13	19	11	22	7	21	18	25	8
CTTGTATGCGTTGTCC	alt_6055_new	8	10	8	13	16	12	9	2	18	12
AGTACTGTCTTGGATC	alt_6055_new	54	91	75	57	119	57	129	49	120	52
TCTATTTTCTTGTTGC	alt_6055_new	96	168	119	115	166	89	196	115	166	98
CGCCCTTTTCTCTTTG	alt_6055_new	0	0	0	0	0	0	0	0	0	0
AGTATTCTTTAAAGCA	alt_6055_new	86	102	74	79	124	71	124	77	127	58
CTGACGTAACTTGTTA	alt_6055_new	57	106	60	61	99	44	104	46	105	48
GCTGAAGAACATATGC	alt_6055_new	154	269	166	172	241	146	268	144	269	172
GCCATCCTAAAGTGCT	alt_6055_new	6	26	12	15	48	6	29	8	42	12
CAATGCGTCGAATGAT	alt_6055_new	0	0	2	0	3	0	1	1	3	3
ATTTATAATATCATGT	alt_6055_new	36	54	43	24	48	33	62	36	44	29
ATTTTGCGCGCATGCA	alt_6055_new	23	39	27	22	51	23	46	25	46	12
TGCTCAGGCACCATAT	alt_6055_new	19	25	14	16	27	15	35	20	25	15
TTTGGATTAAGAGTAT	alt_6055_new	27	35	36	28	55	41	52	16	54	28
TCAAACGTTAGCGGGC	alt_6055_new	39	76	44	37	63	30	61	31	60	24
TCTATGGCTGGCTAGT	alt_6055_new	0	0	0	0	0	0	0	0	0	0
ACCTACTTGTGGTAAC	alt_6055_new	3	8	2	0	3	2	7	1	7	1
GCCTTCTGCGTCGCAA	alt_6055_new	0	0	0	0	0	0	0	0	0	0
TCAAATGAACCTCCCC	alt_6055_new	0	0	0	0	0	0	0	0	0	0
ACTAGAATGATATACG	alt_6055_new	0	0	0	0	0	0	0	0	0	0
CTGCTGGCTCGGCATA	alt_6055_new	29	62	42	33	62	33	63	34	68	35
AGCGTGAGCTGCCCGG	alt_6055_new	0	0	0	0	0	0	0	0	0	0
CAGTATACGTGTTCTC	alt_6055_new	0	0	0	0	0	0	0	0	0	0
CTGCAAACTGGGTAGA	alt_6055_new	0	0	0	0	0	0	0	0	0	0
TTCTGGCAGTGGTCAC	alt_6055_new	8	30	16	6	13	7	17	4	18	5
TCGTGTTATTCGGCCG	ref_6055_new	0	0	0	0	0	0	0	0	0	0
TAGCTTTCGTCAGGAT	alt_6055_new	5	5	2	2	4	2	2	1	5	0
TACCCTCCGACAGGGC	alt_6055_new	29	44	16	22	38	15	44	16	46	23
GAGACCTGTATTCCGG	alt_6055_new	23	54	36	22	55	24	59	30	53	19
TTCCAACAGAGCATTT	alt_6055_new	25	62	46	42	74	40	70	23	80	26
ACTGTTTATATATTGT	alt_6055_new	13	48	28	24	39	12	38	9	33	17
CCATTCCTCTAGTGCG	alt_6055_new	0	2	0	2	2	1	2	0	1	1
AGATCCATCGTTTTTG	alt_6055_new	36	71	38	35	74	35	91	43	65	41
TCACTTATACACCGTT	alt_6055_new	81	145	120	93	183	66	174	76	196	92
TTTCGTCTTTTGTTGG	alt_6055_new	26	60	29	28	39	24	36	26	48	17
ACGTACCACGTACTTC	alt_6055_new	0	0	0	0	0	0	0	0	0	0
ACTCTATACTATGCTA	alt_6055_new	6	19	6	10	27	7	20	9	14	6
GCGCTCTCTCCAGTTA	alt_6055_new	7	6	7	7	14	5	14	3	13	4
TTTAGCGAGTAAGATA	alt_6055_new	89	186	117	129	179	93	201	68	229	99
TTCTTAATGCCTTATC	alt_6055_new	0	0	0	0	0	0	0	0	0	0
AACAAGTCAGCTACCA	alt_6055_new	2	6	4	4	3	2	2	0	4	6
TCATCACCGGCCCGTG	alt_6055_new	121	216	157	129	251	112	245	104	251	91
AGCACTACAGTTTCAC	alt_6055_new	1	12	5	4	11	12	13	7	15	3
ATTTAAGGGGCGCGTT	alt_5815_new	26	7	17	17	3	10	9	14	7	14
CTTCGGCTCAAACGAT	alt_5815_new	46	18	46	48	17	26	37	31	23	34
CCCGGCTCTCGTCCCC	alt_5815_new	5	3	3	2	8	5	7	5	2	5
CACGTAACACTACAGA	alt_5815_new	44	14	25	27	21	33	17	37	18	29
CGTGAACCGGGATTAC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GGTTCGGCTCCCTAGT	alt_5815_new	44	17	55	43	25	24	18	32	25	35
CAGTAATTTGGAGTCT	alt_5815_new	110	55	135	111	60	97	42	83	65	92
ATGGAATTGTGTTGTG	alt_5815_new	152	108	200	196	103	173	87	176	105	167
GCACCATTTGCATGAT	alt_5815_new	13	0	11	16	8	8	9	19	3	21
CGCAGTGTCGTGTGTT	alt_5815_new	91	36	119	95	51	81	42	94	57	80
ACATATCCTCGGTTAA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCTTCAACAACGTCTG	alt_5815_new	64	46	75	83	30	61	46	58	31	73
GGTTTTTCTAACGACT	alt_5815_new	95	42	94	62	40	73	35	68	40	67
TCCTTACTCCGGTTTC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATCCAGGCTCTGATTC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CCCTTTTAGCAGTCGC	alt_5815_new	5	3	5	6	6	3	7	13	6	1
TGAATTCGCGACTTAA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TAAATTGTCAATTTCC	alt_5815_new	8	8	20	17	1	20	11	11	7	14
TCTAGGTAATTACTAA	alt_5815_new	23	17	32	20	18	23	10	20	14	9
TGTGGCAGTTACAGCC	alt_5815_new	115	61	128	107	58	92	55	91	72	91
GTCGGTTACTACCAAG	alt_5815_new	7	9	14	7	9	14	11	10	6	9
CGTTAGCGCTGTTATG	alt_5815_new	117	53	155	125	59	100	56	119	55	101
AACACATTTGCTCTTC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GTACAAAGGACTCATT	alt_5815_new	11	8	30	11	14	11	11	14	13	15
AGAGCTGGTGGAAGAT	alt_5815_new	59	41	80	75	35	61	42	67	42	76
GCACGGGTTCCCCTGG	alt_5815_new	53	36	83	83	32	68	34	64	47	57
TGGTCTTAGGGTTTCG	alt_5815_new	82	33	87	62	40	87	36	63	51	60
AGTGTCTAGAGCATGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TAATCAAATTGGGATG	alt_5815_new	27	14	31	21	11	17	10	24	12	20
TGGTTTAGGTATTTTG	alt_5815_new	48	21	50	52	30	35	21	45	23	30
GCATAAATTAAGGGGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TCGGCGTTGCAGTTGG	alt_5815_new	42	11	53	47	23	33	20	44	20	38
CTTCTGTTGACTCCAG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GTCTCCCGAAGCAATG	alt_5815_new	6	13	26	15	8	16	15	13	6	18
TCAGGCGCTGCTTGAA	alt_5815_new	51	34	62	53	30	47	29	42	34	47
CGTACCACTACTCCTT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TATTCCATCAGGTTGG	alt_5815_new	22	13	36	40	13	27	14	18	12	29
GGAGGCACCTTTTCGG	alt_5815_new	35	19	41	50	14	35	24	42	26	40
CTACGGTGTGGCGTTT	alt_5815_new	37	17	47	37	21	26	18	35	24	40
TCATTTAGTTCTAGGT	alt_5815_new	225	125	324	229	133	219	165	219	137	196
GCGCCGCATCGTGCGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCGGACGTAGTTCTGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTTCTCGCTCGACTCA	alt_5815_new	8	13	15	14	8	14	4	17	16	8
GCGAAATACGTTAGAG	alt_5815_new	11	3	5	2	3	2	3	8	1	4
CGCATTTTCGGGTGCC	alt_5815_new	11	10	26	14	10	9	9	14	9	9
TTCGTACGTACAGTCA	alt_5815_new	56	29	57	48	17	30	22	28	13	23
GGCTTGCCCCCCGTTT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTACCTATCTTTGGTC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTTTCTCATTCCTCTT	alt_5815_new	60	40	76	62	40	66	40	54	34	45
GTTCGTGTTCGAAGCA	alt_5815_new	18	16	22	20	11	19	22	9	9	16
ATCATCGCATGCGGTG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TAGAGCATGACAGTGT	alt_5815_new	40	24	42	37	13	39	10	29	10	32
ACAATCAGAAGGGGTC	alt_5815_new	78	31	59	62	41	51	25	60	27	31
TTAAGGGAATGAACAA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TTGTGCTTTTTGAGTA	alt_5815_new	46	33	47	29	25	37	22	21	31	31
CGGAAATCTGGATACA	alt_5815_new	34	13	23	27	12	32	15	34	14	30
AATTCGTCCTATTGTA	alt_5815_new	68	29	88	74	45	78	37	84	39	69
AGCCTGTCCCTGCGTT	alt_5815_new	30	31	58	45	15	42	26	34	32	38
CGCAGCTAGTTTCTTC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTTCTCTCATCTGGGT	alt_5815_new	416	232	476	408	240	357	245	351	251	343
TTAGGTCCACGGTGTG	alt_5815_new	31	18	46	43	22	33	26	35	25	41
GTTCTATTGCTCTGCG	alt_5815_new	25	11	28	26	15	23	13	17	8	16
TTTTATTGTGGGGGCC	alt_5815_new	58	26	62	55	27	56	16	39	21	50
TAGAAGAGGACTGTTG	alt_5815_new	87	62	124	105	50	91	53	83	66	107
GCGTCAATATGATTTA	alt_5815_new	140	57	180	138	74	135	79	166	78	128
TTTGTAAACCCACCGG	alt_5815_new	113	66	127	140	71	99	64	106	50	106
TGGCGGCACTGTTAGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CATTTCGGGTCTATGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCCAGTCAGGAGCCCC	alt_5815_new	0	1	1	1	1	1	2	1	3	0
GGTACGTCCCTGACCT	alt_5815_new	41	25	50	44	28	32	27	33	30	41
TGCCTGTTTCACTGTA	alt_5815_new	14	3	11	4	5	10	2	10	5	8
TAGCACTTCGCATCCG	alt_5815_new	230	139	284	259	141	232	128	240	148	214
CTAGGTAGAGGTGACT	alt_5815_new	43	22	43	39	25	59	32	38	15	41
TTTCTAGTAGGAGATT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TGTCTGCATCACGGGG	alt_5815_new	11	7	19	11	4	12	7	12	7	16
ACCACCCGTCCGCTCT	alt_5815_new	65	30	89	54	23	46	33	59	41	53
ATGTTTGTTCAAGCAG	alt_5815_new	81	38	115	91	52	99	49	68	48	64
GGATAATGTTTCTGGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TCTGCAGAACCGTATT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATGTGTAGGCGTCCTT	alt_5815_new	65	30	85	75	39	62	49	79	36	72
GGTTCTAAGAGTGCCC	alt_5815_new	37	19	42	44	20	39	25	40	24	40
TAATACTTTTGTAACC	alt_5815_new	20	25	17	19	33	20	28	16	28	17
CTTGCAATCACCGAGT	alt_5815_new	12	5	13	10	10	12	7	10	9	8
GCTAAGCTGTTTTACG	alt_5815_new	5	8	9	19	6	14	5	9	10	7
CTCAGCTTTAAAAGGA	alt_5815_new	6	6	3	7	2	15	5	5	2	10
GGCCGGGTTGATTATG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTTATTGCATCTTGAC	alt_5815_new	32	12	28	24	12	32	15	14	13	24
GTACTGGATACTGGCT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCGTACAACTCGAATC	alt_5815_new	158	81	187	127	71	123	78	146	91	98
ACTGTCTCCATTTGCT	alt_5815_new	244	63	217	206	84	186	71	186	91	161
AAGCTAAGTCTCATCT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCAATACATTAGGTGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AGAGTTAATTCTGAGT	alt_5815_new	25	20	38	45	16	26	17	31	25	31
GTGTGGGCGTACAGGC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GATTAGGTCTATTGTA	alt_5815_new	65	44	52	68	50	63	38	74	37	33
GGGCAGGCTATGTAAT	alt_5815_new	13	12	27	15	7	18	18	20	18	26
TGTGGTCTGCATACCC	alt_5815_new	55	34	77	61	37	63	45	67	45	40
CCGTGGATTGAACGCT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TCTCCCTCCACTTTGT	alt_5815_new	12	7	16	9	5	15	8	18	2	9
TTAAACTTTTGTTATT	alt_5815_new	80	54	93	92	38	58	29	69	39	69
GATAGGCACGGGCGGC	alt_5815_new	159	79	206	200	99	140	80	161	85	154
GTATCATTGTTATTGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATAGTATGGCCGGCGC	alt_5815_new	11	8	15	9	4	15	4	10	9	9
ATGTGCCTGAAACAAC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GACGCTACCTTCTTAC	alt_5815_new	13	18	16	21	15	14	19	10	11	19
CTACTAAACGTAGTCT	alt_5815_new	4	0	9	6	3	5	3	4	2	10
CTCACATGTCAACCGT	alt_5815_new	50	41	61	53	39	41	29	41	32	38
TTTAGGGAGTGCTAAG	alt_5815_new	37	25	45	41	20	34	17	44	27	33
ATGCATCTATTGATTA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GAGCTTATTTCTGCAG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATGGCTCTCAGTGCCC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ACGTTAAGGTATCAGA	alt_5815_new	10	17	24	27	11	14	13	18	13	11
TACCTTACAAAATGAT	alt_5815_new	39	15	38	34	16	33	9	24	21	29
TGTAGGGTGGACTTCA	alt_5815_new	259	119	350	252	129	257	128	251	154	247
AGTAGTTTCGGCCCCC	alt_5815_new	21	10	18	6	5	19	3	8	2	20
GTCCCTTAGTAATTGC	alt_5815_new	14	9	8	10	6	9	7	9	6	15
TGCCTAAGCTCCTGGA	alt_5815_new	38	13	34	21	18	44	16	31	10	30
TCATTAGAATTCGTTC	alt_5815_new	21	12	23	18	8	16	20	17	13	13
TATGTCCTTGCATACT	alt_5815_new	83	49	112	101	50	83	61	93	48	80
TACCGCCCTGGTATTC	alt_5815_new	27	16	36	19	10	10	11	21	8	22
GTACAAATAGGGAGAA	alt_5815_new	55	18	58	58	26	45	20	35	25	42
GATCCCGGCGACCGGA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTGCCTGACTTTGAGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TTTAATCTGACGGCCA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GACTACTCGATTTTCT	alt_5815_new	47	12	68	59	33	68	32	59	35	51
ATAGTTCGTTTCACGC	alt_5815_new	91	52	91	67	30	82	42	68	41	69
CGTATGTGACTTGATC	alt_5815_new	30	16	31	20	5	23	10	22	19	26
CTCATAGCCCGAATGG	alt_5815_new	69	42	81	67	44	65	37	63	38	60
GTCGTACAATTACGCA	alt_5815_new	44	21	62	48	24	42	22	35	29	34
AGGTATATATTAATCG	alt_5815_new	57	22	68	50	37	55	36	59	24	39
CGTTGACCCTTTGTCT	alt_5815_new	28	15	31	24	16	28	15	32	17	29
GATTGACGTACTGTAC	alt_5815_new	7	3	7	10	4	3	6	10	1	9
AACTCACAACATGCGT	alt_5815_new	560	273	691	577	269	521	274	488	285	462
AATCTCTGGGCTGACC	alt_5815_new	45	37	89	62	39	67	42	73	32	69
GATGTTACGATTTGTA	alt_5815_new	47	17	51	60	17	21	21	35	18	36
CGTACATTTTTTTTGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCCCTATTGAACTCTT	alt_5815_new	188	130	234	195	108	191	126	205	121	180
TATTATCTTATAGTGC	alt_5815_new	51	35	93	68	33	53	30	59	35	46
GATGCGCTGATCGCCT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GGTGTCTGGCTTTTAC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCTTGTTTGTAATTGA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATGGGCCGCGCGCTTG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CCAGGCGCACATCTCG	alt_5815_new	14	12	12	11	4	9	7	9	7	9
CTGTTCACCACGGTCC	alt_5815_new	68	26	60	57	25	42	21	53	37	40
GGGTTTTAAATCGTAC	alt_5815_new	86	41	115	107	41	86	41	84	33	77
AAGGGTGCGTCGAAAT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ACTGTTTTGCTCTGCT	alt_5815_new	6	7	15	13	6	10	8	10	3	10
AGTGGATCATACTTGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GGTAATCGACACTAAT	alt_5815_new	15	9	20	27	5	14	19	9	9	12
ACACTGTCTAGGCGTC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TTGTAAAGCAATCGGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GGAGCGTGCTTAATCT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATAACTTCAGCTACCT	alt_5815_new	118	71	137	117	55	127	68	111	73	83
CGTCGTTATGTCTATT	alt_5815_new	4	1	7	6	3	0	2	5	2	3
CACGGTGGTGATTATT	alt_5815_new	30	4	24	25	23	28	22	26	9	28
AAGCGTCACACGCACT	alt_5815_new	6	5	5	9	3	3	2	7	0	5
GACACCGTTCCCTGCA	alt_5815_new	7	8	11	16	7	9	10	7	14	10
CCTCCTTGTAATCAGG	alt_5815_new	77	35	73	69	31	61	51	71	52	72
CTCAGGAAGGTTATTA	alt_5815_new	70	38	86	68	43	51	41	56	35	64
TTTCCCTCATGCTAAT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TTAGTACTAGCGGCTA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TCTCATTGGTGATAAA	alt_5815_new	10	6	10	4	5	12	5	10	10	10
GAGTTTTTTATGCCTA	alt_5815_new	94	62	117	105	50	69	72	86	77	82
ATCGCGTTAGTGTCTT	alt_5815_new	144	97	183	177	98	146	80	152	95	151
TTGGTATTGAGTTTTA	alt_5815_new	30	12	39	36	21	24	19	28	18	33
CTCTGGGGATTATGAT	alt_5815_new	172	72	217	168	80	163	66	155	89	170
TTGGGGCAACTTCCGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TCTAGCCTCGTCCAGC	alt_5815_new	7	1	8	4	1	4	3	4	4	4
TTAGGTGGCAAGGCTG	alt_5815_new	70	37	67	83	21	67	32	59	50	59
CCATTGTGCTGACAAG	alt_5815_new	72	29	83	63	39	53	35	68	39	54
CGGCCCTAGGTAATCT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTTAACCAAATATTGA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GAGAGGTCAGGGACGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTGATTTCCAACGTGT	alt_5815_new	89	42	95	76	34	63	45	70	54	80
CGCTCATGGACACATT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCCTCTATGCTAATCC	alt_5815_new	84	50	92	92	52	73	45	66	51	70
TACCGTCAAGCGGTGA	alt_5815_new	39	17	57	34	20	40	24	41	30	29
ATTGGAATATTTTCGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CTTAGTATTGGAGGCC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AGCGCGCACAATAAGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GACCTTATCTTACATA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AAGAGCAGCGAGCATT	alt_5815_new	69	28	56	63	35	52	26	45	28	42
TAATTACGGTCAGCGC	alt_5815_new	20	11	15	15	11	20	10	20	8	11
CCCGGCCGGCTCTTCG	alt_5815_new	11	31	12	12	16	5	27	5	27	10
CGCCCCGCCAACTGGC	alt_5815_new	36	20	37	57	37	30	48	30	45	32
TTCCACTGTAAGCCAC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GACGATTCGGTTTGGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CATGTCGGCGTTCATT	alt_5815_new	50	25	73	62	28	53	33	62	25	62
ACATTCGACGACTGCG	alt_5815_new	129	71	145	138	78	106	67	127	77	119
GCTTCTTTTAGCCGAA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCAGCGGGTGGATAGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCCTTTATTTATGCTT	alt_5815_new	20	11	24	13	6	12	16	14	9	10
CTCTGTATCGACTTTA	alt_5815_new	6	10	6	9	8	6	4	12	7	2
AACAACTCCTTCCTCC	alt_5815_new	32	28	35	45	17	23	16	27	21	15
CAATATGGTTTTGTGT	alt_5815_new	22	16	34	27	25	32	14	26	26	24
TTGTAACATGCCTCGC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATCGTACAATAGCACA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AATTAGGGGATCCTTC	alt_5815_new	58	16	65	75	25	71	28	61	27	43
GACCCGTTAGCGCCCT	alt_5815_new	27	19	45	42	25	32	30	26	15	32
CTTTACCTTTGCCGTT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AGTATGGGGGCCAAGG	alt_5815_new	143	69	182	143	60	136	69	128	67	146
TTTCCGATGTTGTTCG	alt_5815_new	128	77	169	145	83	108	104	112	87	98
TGCGAGGCCATATCTT	alt_5815_new	67	46	105	90	30	65	38	72	29	68
CTTAAAGTTGAATTGT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AGCGTGCCGAAGCTAG	alt_5815_new	22	9	46	21	8	24	9	19	14	10
ATCCGTAGTTGTGGAA	alt_5815_new	25	8	24	13	12	30	15	21	20	20
GGGCTTGACCACATTA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TTAGAGAAGATTCCTT	alt_5815_new	18	11	19	21	6	11	9	14	11	12
TCATATCCTCGGTTAA	alt_5815_new	51	26	78	73	18	49	23	59	40	60
TTAATGCGAGTGTGGC	alt_5815_new	64	34	75	67	30	56	26	54	29	37
ACGAATATTTATGGCT	alt_5815_new	150	64	191	142	73	121	92	132	67	128
AACGGTGTTCACACTA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GGCCTTTGCGTCATTA	alt_5815_new	8	4	5	1	5	7	3	7	1	5
GCGCCCTGTCAAGGTT	alt_5815_new	1	1	1	2	3	2	1	2	4	3
AGTCCTCGACGATTTG	alt_5815_new	12	8	18	14	9	13	8	13	4	10
CGTGTCTTGTACGTTT	alt_5815_new	48	34	80	61	21	66	37	43	29	55
CTACAATGCGCAGTGC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ATTACCTGATGGAAAT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AGATCCCCTTTTTGTG	alt_5815_new	56	69	39	48	90	51	78	38	61	38
TAGTTCATGTCTTGCT	alt_5815_new	78	47	103	82	56	86	72	79	40	70
CTGTTAATCTTGACGG	alt_5815_new	14	18	31	30	11	17	14	13	15	13
TCCTCTTAATTTTGGT	alt_5815_new	272	126	348	304	139	285	147	293	152	241
AACGACCCATTTCTTC	alt_5815_new	110	43	126	116	48	109	45	113	44	102
GGAAAAGAAATAAGCC	alt_5815_new	23	22	35	19	17	23	11	27	21	22
CGGCATGACCTCCATG	alt_5815_new	33	10	47	39	21	29	17	30	13	29
GTATGGGTCCCACCAG	alt_5815_new	64	25	61	67	21	41	21	55	32	48
CCGCGTTTACGGTGCA	alt_5815_new	119	51	120	110	64	75	96	92	66	81
ACGGCGTCTTCTCAAT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GGAGCTCTAGTGGTGG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCCCCGTTAGCGCCCT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
AAACACAGTCGGTTCG	alt_5815_new	12	10	25	9	5	16	4	9	5	14
GCAATAGGACGAGCCC	alt_5815_new	40	30	51	43	22	37	21	43	23	44
TTGACGTATATATAAG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GTCCGTCTACCGCACG	alt_5815_new	12	18	24	18	20	19	11	20	14	22
ATGGCCGACGTTCTGC	alt_5815_new	22	22	32	21	19	20	24	27	34	18
GCATTCGTCCCTGCCT	alt_5815_new	138	89	169	136	76	131	98	129	79	136
GTGGTTAGCTCCGTTA	alt_5815_new	50	26	42	54	29	48	19	35	23	41
TCTTATATGCCGCTAT	alt_5815_new	13	20	20	14	12	15	9	12	11	16
TCGGGATACACTACCG	alt_5815_new	20	12	22	30	11	24	16	23	12	21
TTAAGCCGACCACCAG	alt_5815_new	7	5	16	10	4	11	8	1	5	8
TTGACGGTGCACTCTT	alt_5815_new	2	4	4	1	1	0	0	0	0	0
CTTGCGCGTACATTTG	alt_5815_new	20	13	32	26	12	13	10	23	12	28
TTAGTGTATTGTTTCG	alt_5815_new	140	80	184	132	72	121	77	98	89	106
CTCCAACCGTTAGAAC	alt_5815_new	22	15	27	32	14	26	19	17	17	20
TATTTAGTCCGGTGAG	alt_5815_new	19	14	17	24	15	17	6	14	8	16
ATATTATGTAACGTAG	alt_5815_new	0	0	0	0	0	0	0	0	0	0
TTGTGGTTTCAACCAA	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CGATGTTAATAGGTAG	alt_5815_new	100	36	101	104	59	77	44	84	69	97
CTCAGTCTTTCGTACT	alt_5815_new	3	3	7	1	5	2	7	3	4	4
TAGGGGTCCGTATATG	alt_5815_new	49	29	66	48	24	60	21	42	36	41
CACTGGCCGAAATATT	alt_5815_new	0	0	0	0	0	0	0	0	0	0
CCTCCTTTTTTTGCTC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
ACAAGGAAGCTGCTCC	alt_5815_new	125	53	163	123	51	119	50	129	44	125
CGAACGGGGAGTCCCC	alt_5815_new	0	0	0	0	0	0	0	0	0	0
GCCTCAAAAACCTCGA	alt_5815_new	10	18	19	19	9	8	16	14	14	12
CGCCAAGCGGTGGGCA	alt_6057_new	93	120	98	76	90	71	107	82	106	62
GGCTCCTGTGTTGGGA	alt_6057_new	17	20	22	22	23	5	24	12	33	6
CAGAGATCTAAAGAAT	alt_6057_new	202	208	209	194	265	196	247	178	280	185
TCGCATCTACCGGCAT	alt_6057_new	0	0	0	0	0	0	0	0	0	0
GAGTTTATTTTCTTTA	alt_6057_new	17	15	21	19	16	11	16	14	20	15
TCCCCGATTCTGTCCG	alt_6057_new	7	12	14	4	18	6	18	9	25	10
GTGTGGGGTGAAGTCT	alt_6057_new	0	0	0	0	0	0	0	0	0	0
GGTTAGATAGGGTGCT	alt_6057_new	3	1	2	1	3	1	3	0	5	2
AGCCCGTGTGGTGTAT	alt_6057_new	21	36	20	24	34	27	52	22	42	21
CTCCCTTGTTTTGTTG	alt_6057_new	0	0	0	0	0	0	0	0	0	0
GCCGAACGCCTGTAGA	alt_6057_new	8	6	4	11	9	5	9	8	13	6
TTGAGACTACGTTGGG	alt_6057_new	0	0	0	0	0	0	0	0	0	0
ATAGTTCAGAACAATG	alt_6057_new	2	3	1	2	3	3	2	4	1	4
CCACCCAGCGATATCG	alt_6057_new	20	33	23	25	39	18	23	17	41	18
GTAAAAATCTAAATGC	alt_6057_new	27	39	30	34	30	30	30	28	33	27
CATAATCGCACCCGTA	alt_6057_new	4	13	11	4	13	7	13	2	10	6
TCCCGCGTAAGACCTA	alt_6057_new	0	0	0	0	0	0	0	0	0	0
ACGGGATTCACAATCC	alt_6057_new	0	0	0	0	0	0	0	0	0	0
AGCTCACGCCCTTCAC	alt_6057_new	0	0	0	0	0	0	0	0	0	0
GGCTCGCATGGATTCT	alt_6057_new	33	29	32	26	17	27	30	25	30	23
GTTTAAGCTGTGTTGG	alt_6057_new	2	6	4	4	6	3	5	3	8	4
TTGTGTCAAGTCTTGG	alt_6057_new	57	88	88	72	72	61	80	75	104	57
TCCGTGACTTCCGTGC	alt_6057_new	64	112	86	54	128	38	113	63	126	53
ACTCGTTAGTGGCTCC	alt_6057_new	4	4	6	3	2	4	6	3	6	1
CTGATTTTGGCGCATA	alt_6057_new	134	167	141	144	161	123	154	107	160	100
CTTCACGATAATGCGC	alt_6057_new	26	29	29	21	27	28	23	31	22	25
GCTGTATTTCGCGGGA	alt_6057_new	16	23	18	19	17	17	22	13	22	17
AATCTCTGAAGTGCTT	alt_6057_new	23	17	23	14	26	19	20	11	22	12
CTGACCGATCTTATTG	alt_6057_new	16	24	17	9	28	13	18	9	26	5
ACGTTCCATTCGTCAC	alt_6057_new	0	0	0	0	0	0	0	0	0	0
ACTTTTGGATTACACT	alt_6057_new	5	4	3	1	2	0	3	1	6	0
TATCAGTTGCGCTCCT	alt_6057_new	3	7	4	1	2	0	2	1	4	4
GGCAGACGCAGAGAGT	alt_6057_new	0	0	0	0	0	0	0	0	0	0
GCCCGGAATAACGTTT	alt_6057_new	65	73	76	61	97	73	68	74	86	75
ACTGTTTGTGGATTTT	alt_6057_new	55	73	59	46	59	57	76	37	99	54
TAAGGTCATCTCTTCT	alt_6057_new	10	10	7	10	5	9	3	10	5	5
AACTAATAGAAGCTCG	alt_6057_new	0	0	0	0	0	0	0	0	0	0
TAATGCCTACTCTTTA	alt_6057_new	0	0	0	0	0	0	0	0	0	0
CAGCCCTCTCGTGATT	alt_6057_new	55	102	70	45	80	49	93	40	94	50
GATCAACGTACGTTCC	alt_6057_new	48	33	48	46	39	25	42	45	41	31
CATGGGTTCTTGGTCT	alt_6057_new	28	42	32	35	40	27	53	26	47	21
CTGAATTGTCTGTACA	alt_6057_new	26	28	31	26	43	24	31	29	45	22
GTAGATGACCCGTGAT	alt_6057_new	10	6	13	6	23	11	11	13	13	10
TAATAGAACTGTATTG	alt_6057_new	10	13	8	9	20	6	12	11	17	7
TGCTCTGTCCGCCTTG	alt_6057_new	0	0	0	0	0	0	0	0	0	0
CGAGTATCAGGGGTCG	alt_6057_new	0	0	0	0	0	0	0	0	0	0
GAGCCTCGGTTACATG	alt_6057_new	0	0	0	0	0	0	0	0	0	0
CTCTATTGTCGTATAA	alt_6057_new	0	0	0	0	0	0	0	0	0	0
TGTCCCCTCCGCTGGG	alt_6057_new	10	14	15	10	17	9	19	15	14	11
GATCCGTATTACGCCT	alt_6057_new	29	36	34	28	35	19	35	22	36	23
TGATTTCTATGCGCAC	alt_6057_new	9	29	19	5	15	12	22	8	24	12
TATTGTTTTGCCGCGG	ref_5765_new	46	61	49	46	77	53	70	42	62	50
GGAAATTCGGCTATTA	ref_5765_new	34	60	88	53	65	41	67	54	70	47
AGATATCGCCAAGTTC	ref_5765_new	0	0	0	0	0	0	0	0	0	0
GGCATCTTTATCTGTA	ref_5765_new	117	163	134	116	155	110	149	105	201	99
GTCGAAACTTATCGAG	ref_5765_new	0	0	0	0	0	0	0	0	0	0
CTGATAGGATTTCTCG	ref_5765_new	0	0	1	0	0	0	0	0	0	1
CCATATGGTCCTAGGC	ref_5765_new	88	139	114	85	141	66	110	82	140	70
CCATTTTAACGGACTA	ref_5765_new	0	0	0	0	0	0	0	0	0	0
TGCTTTTCAGTGAGGC	ref_5765_new	21	30	35	14	23	22	34	14	45	20
ACAGACTGTCGTGAGG	ref_5765_new	12	18	17	14	14	13	14	5	15	18
ATTACGCTGCTTCAGA	ref_5765_new	57	44	43	39	51	37	38	37	37	28
TGAGCTTTTCGTTCGT	ref_5765_new	0	0	0	0	0	0	0	0	0	0
TTTCCTCCGAGAGTCT	ref_5765_new	24	34	25	18	41	18	31	15	33	13
CTCTGCAACAGCCCAG	ref_5765_new	7	12	8	4	15	7	13	10	8	4
TTTGTCTTTTCATTAA	ref_5765_new	26	37	37	36	36	35	51	35	42	24
CTCTCCACTTTTCGTC	ref_5765_new	7	23	8	8	31	8	20	7	16	5
TTCTGTTTCCCCGTTC	ref_5765_new	8	30	15	8	39	13	25	14	43	16
GGGTAGTTTGTACCGA	ref_5765_new	25	25	28	23	29	12	33	22	31	15
TGCGCTAGAGAGTGTG	ref_5765_new	0	0	1	2	0	0	0	0	1	0
CAATGGAAGGTCTGGT	ref_5765_new	151	210	175	153	212	169	182	165	228	147
GATCCACCTACTTGCC	ref_5765_new	0	0	0	0	0	0	0	0	0	0
GCGACTTCCAAAAGGA	ref_5765_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCGGACGGCTC	ref_5765_new	12	25	18	20	26	27	34	17	37	27
TCTTGAAAATAGAATT	ref_5765_new	0	0	0	0	0	0	0	0	0	0
AGTAACCTTGTGTGGG	ref_5765_new	21	24	20	18	33	20	34	19	20	18
CCAGAGAACTCTGCCG	ref_5765_new	28	90	42	32	82	23	78	33	93	25
GTATGTACTTATGCCT	ref_5765_new	53	54	51	50	32	37	62	26	83	37
TTCCGCTGCATACCTA	ref_5765_new	3	40	6	10	28	7	26	2	24	3
GGGGTGGGTTTCGCAT	ref_5765_new	23	35	25	25	41	26	32	22	48	26
GTTTTATCATTCACTT	ref_5765_new	9	24	11	7	12	14	17	13	17	5
CTAGATTTATGTCGCC	ref_5765_new	0	0	0	0	0	0	0	0	0	0
CTTATCTTGATAAGTG	ref_5765_new	36	55	45	42	46	32	60	35	38	33
GCTTTTGGGCGATTTC	ref_5765_new	34	59	50	28	54	43	50	29	53	29
GGACTATCCGCGCGCG	ref_5765_new	56	65	75	76	88	69	78	55	73	56
GCATGTGGGTGATAGA	ref_5765_new	179	229	215	177	214	175	252	191	294	153
AATGTTAAGAGGGTAG	ref_5765_new	4	6	2	4	1	4	5	2	5	0
GTGTTCGGTCCTTTTT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
TGTAAGAGATGCTCTG	ref_5765_new	18	40	27	24	27	24	35	11	31	18
GGCTTCGAGATGCATA	ref_5765_new	11	22	18	19	16	7	21	11	22	13
GGTCAACTCTAGCTTT	ref_5765_new	1	6	5	2	3	2	1	3	3	0
AATATTTCAGTCCCCA	ref_5765_new	0	0	0	0	0	0	0	0	0	0
CTGAAGCGTATCAGTG	ref_5765_new	0	0	0	0	0	0	0	0	0	0
CTAGATCAATGATAAG	ref_5765_new	12	14	22	15	22	13	26	9	26	9
ACTTCGTACAAGGTAC	ref_5765_new	0	0	0	0	0	0	0	0	0	0
TTTTTAAGCTTACAGT	ref_5765_new	7	13	11	14	10	4	7	19	11	8
CTACCTAATGGTATTA	ref_5765_new	32	36	38	24	38	29	37	29	37	29
ATCTTTAATTGACTAC	ref_5765_new	34	60	43	29	50	19	47	46	57	36
AGAATACGTTTTGTAT	ref_5765_new	93	98	71	84	96	74	90	83	116	68
ACCTAATAGGATGTAT	ref_5765_new	0	0	0	0	0	0	0	0	0	0
CCTTGTTTCATAGCTG	ref_5765_new	6	14	1	6	30	7	25	7	23	6
ATCGTTTTCTTCTAGA	ref_5765_new	0	0	0	0	0	0	0	0	0	0
CTAGTGGACGGATTTC	ref_5765_new	117	149	95	122	151	80	138	93	131	85
GGTGATCATTAGTTCT	ref_5765_new	16	14	18	14	23	7	8	20	21	8
TGAATAGATTTAGTTT	ref_5765_new	0	0	0	0	0	0	0	0	0	0
ATCCTGTATTTCCTTT	ref_5765_new	15	19	19	6	24	13	22	16	14	9
TCAGTTCCCAGTTAGA	ref_5765_new	8	7	17	3	10	13	7	5	8	5
TCTAATCACCCGGCAC	ref_5765_new	82	94	57	57	80	80	80	68	94	64
GACTCACAAGGAATTT	ref_5765_new	0	0	0	0	0	0	0	0	0	0
ACCGGTGCGTAACTTT	ref_5765_new	1	12	1	1	10	0	13	1	9	2
CGCTACGCTACCCAGC	alt_5765_new	15	16	13	17	21	11	18	11	21	10
TAACCGGAACCGGTAC	ref_5765_new	0	0	0	0	0	0	0	0	0	0
GTACTAATATCGAAAT	ref_5765_new	0	0	0	0	0	0	0	0	0	0
TCCGCATTTAAATGAG	ref_5765_new	10	21	12	11	19	10	19	12	12	10
GCTAAATTTCACATTT	ref_5765_new	32	22	28	19	24	29	23	26	35	31
AACTAGATAGGTCAAG	ref_5765_new	13	23	21	9	23	7	19	14	35	8
ACAAGGAGCAGGCTAC	ref_5765_new	20	24	27	22	18	17	17	18	39	13
TTCTGATGGAAGACAC	ref_5765_new	0	0	0	0	0	0	0	0	0	0
GTATTTGCGAGCCTGG	ref_5765_new	11	19	20	7	21	11	15	8	17	11
CTCTTTCTTGCTGCTT	ref_5765_new	32	37	32	26	33	17	29	23	34	28
GCGGAATCTGAGAAAC	ref_5765_new	67	67	102	79	88	55	85	66	90	60
TGACTGCGTTTGGAAT	ref_5765_new	5	17	11	11	12	5	10	11	20	5
GATCGGCGTCTATACC	ref_5765_new	25	25	23	27	28	15	24	13	24	17
TTCATCTGTTTCTGGG	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGGGGGTTGCCTT	ref_1762_fdr	12	5	13	18	7	18	10	14	9	5
TTGTACTTGGACTATT	ref_1762_fdr	136	79	157	131	70	112	73	128	68	115
CTTGAATCTTGCTGTG	ref_1762_fdr	212	158	252	269	153	200	125	254	137	219
CTCTGTTGGGTAGCTT	ref_1762_fdr	243	156	283	260	131	263	117	208	164	201
GATCTTGTTGCTTGTG	ref_1762_fdr	3	4	5	1	1	2	0	3	0	2
TGTATAGATAATTGTC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCTTAGTTACGGG	ref_1762_fdr	81	36	91	96	46	69	53	81	51	82
TCCTGTCGACCGGTTT	ref_1762_fdr	5	8	4	9	11	3	9	3	10	5
AATGGGGCCTCATATT	ref_1762_fdr	27	20	28	30	11	17	5	20	11	12
GGGAGATTCACATGAA	ref_1762_fdr	27	7	22	25	8	17	12	21	11	17
GCTGATCGGGATTCTC	ref_1762_fdr	83	41	81	92	48	72	43	88	48	87
CTTTGTGCCTTCATGT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTAACTTTGGTCT	ref_1762_fdr	6	7	14	14	6	8	5	10	5	11
AGCCGGACGATGTTGG	ref_1762_fdr	45	26	77	58	34	44	41	45	39	44
ACCTGGTTAATCGTTT	ref_1762_fdr	267	178	334	286	185	261	152	237	162	243
CCCTGGAGTATACGCT	ref_1762_fdr	75	46	96	77	50	74	44	77	39	68
TCGTAATCGTCACCCG	ref_1762_fdr	105	65	114	77	55	87	47	90	49	71
TATTGGATCGAGCCAG	ref_1762_fdr	55	26	65	46	28	61	21	60	29	35
CTTGTCCACGGACTTT	ref_1762_fdr	189	157	234	169	103	181	144	208	127	203
GCACAGGGGGCCGTGC	ref_1762_fdr	14	6	28	11	13	25	10	17	11	21
AGGACAACAACCACAT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTGGCTTTACCCT	ref_1762_fdr	157	110	185	223	101	196	102	204	112	162
TCGCTTGTGCCGATAT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGCCCTTGCCCTC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTAGACCACAGA	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAGTCAGCCTTCC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CGAATTTTGACGGCAG	ref_1762_fdr	6	1	4	3	0	5	1	1	3	1
TCCCGCAAGCCTTCCG	ref_1762_fdr	2	4	4	3	2	4	5	2	5	1
GTTAAGCTGCGAGTAG	ref_1762_fdr	56	25	64	71	24	59	41	56	23	60
TCAGGGTCCGCCCTTA	ref_1762_fdr	95	47	104	124	50	108	58	121	69	77
CGGGGTATAGCTGACT	ref_1762_fdr	104	50	151	112	52	105	58	111	55	106
CGCTAATGATGCTAAA	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCTCTCAGCTACC	ref_1762_fdr	24	11	24	14	7	24	11	27	22	16
AGGCATAAGTTGAGTT	ref_1762_fdr	14	6	27	16	15	12	13	11	8	20
TTTCCACGGTCGGCAT	ref_1762_fdr	68	50	69	68	59	55	56	65	67	74
TTCACGCACTGATCGG	ref_1762_fdr	37	24	50	41	15	30	29	38	23	34
TTGCGTCGCTACGCCG	ref_1762_fdr	16	3	13	8	11	11	10	5	4	4
CCGAGTGTTTGGCCAA	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GCAACTTCGGAACACA	ref_1762_fdr	43	15	65	43	21	48	16	44	34	53
TCTATGATTTAGTATT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TATCACCGATCCACCA	ref_1762_fdr	38	18	41	38	18	46	26	37	22	29
ATGTGTATAGGTTTTA	ref_1762_fdr	114	67	147	124	71	112	81	124	66	97
GATTCCTTCATGTGCT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TCAAATTTTAAAGGGG	ref_1762_fdr	77	43	94	73	41	62	38	67	39	64
TTCATCAACATCGGAT	ref_1762_fdr	20	3	15	16	9	11	5	17	4	24
TAAAAAACAGGTGCCA	ref_1762_fdr	11	8	32	19	7	14	14	20	4	12
TCCCTCGTGACAGTAT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCCTGGTAATAGC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCTAATCTACCC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGATGACATTGTT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTGGCTCTGATGT	ref_1762_fdr	80	48	86	81	37	84	54	69	32	61
GCTGTAATTCCCAGTG	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGGAATGGGCTCT	ref_1762_fdr	27	13	44	50	22	28	27	35	11	28
GCAAGGGGCCAATGTT	ref_1762_fdr	61	21	60	66	33	62	37	49	41	54
ATCCACTCCTTCAAGA	ref_1762_fdr	42	37	47	40	37	47	32	39	47	56
TAAACCATCCTGCTTT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCGCTAATGTGTA	ref_1762_fdr	17	6	10	20	13	19	8	13	6	11
TGTGCGGACACAGGTG	ref_1762_fdr	17	2	17	10	4	12	8	7	5	16
ATCGATTGAGAGGTGT	alt_1762_fdr	27	8	21	16	12	27	18	8	15	25
TATAGTATCGGATGTC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TAAACCCAAATTTATC	alt_1762_fdr	83	35	98	92	42	78	46	85	45	83
GACTAGCAGAATCCCT	ref_1762_fdr	94	47	110	91	47	71	48	99	48	66
GTGGGAGGACTCACTA	ref_1762_fdr	92	46	98	86	44	81	51	73	46	81
GATTTCCAATACATTC	ref_1762_fdr	16	6	16	13	8	13	17	11	4	9
TAATCGGCATCGCACG	ref_1762_fdr	16	8	26	17	18	27	8	16	7	22
TAAAAGGTATCGAGCT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TGACAGCGTAAGGATT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTGACACAGTGGCCCT	ref_1762_fdr	29	22	36	52	18	30	17	27	19	32
GTGGCATGTCGTTTTC	ref_1762_fdr	170	85	226	199	103	184	91	194	73	192
ACTGTACACAATCGAG	ref_1762_fdr	28	18	39	41	22	34	17	30	16	30
GGTCGCTAGTGTCTCT	ref_1762_fdr	44	30	40	27	39	23	38	27	43	32
TAAGTGTGTTATGAGC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TATTAAACTCTCATCG	ref_1762_fdr	1	0	2	1	1	1	0	0	2	1
TCCGGCCTTTGCTCTC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CACACGACAGCGTCCG	ref_1762_fdr	182	93	244	170	110	172	97	164	123	157
AGCTGTAGCAGGCCCG	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTTGTGCCTCAGT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GCTAACGCGCATGGAG	ref_1762_fdr	80	34	91	84	47	92	45	82	31	75
CGATTCCTTCACGACT	ref_1762_fdr	177	47	172	143	94	160	102	120	95	126
TGGGGTCACAACGGCT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
AATGGTTAGTACCTGG	ref_1762_fdr	139	69	175	156	82	168	66	123	70	154
CCGTCCGGCGGATCTA	ref_1762_fdr	140	65	163	153	78	116	86	117	93	117
ATATCAAGTGGTTCAA	ref_1762_fdr	74	47	97	101	51	70	58	77	38	71
TCCATGTCGGCTACTT	ref_1762_fdr	26	12	22	18	9	22	6	19	12	19
TATGATACTTTGCCCC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CACCCGGCTTCGCTTA	ref_1762_fdr	32	14	30	32	11	36	16	33	21	28
GGTCGAAATTACTCAG	ref_1762_fdr	134	57	148	127	64	117	53	106	68	105
ATCAACCGGCACTCGT	ref_1762_fdr	49	25	54	54	32	42	23	59	21	36
TTCGTTGTTGTCTGCA	ref_1762_fdr	134	78	161	149	65	128	66	134	64	139
AATGACAGGCTTGGCA	ref_1762_fdr	15	3	16	13	6	9	5	15	6	9
ACTTTTCAAGCGGGTG	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGAGATGACCCTC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTCTAGCGTCTGTCCT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GACCCCCCTGAGCCAA	ref_1762_fdr	307	125	364	354	148	266	157	317	164	268
GTCCCTTAGGTTTTGT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTTGCAAGGGTAT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GACGATTGACGTTCTA	ref_1762_fdr	390	198	450	444	220	373	196	403	217	313
CACCTTTTCTGAGACG	ref_1762_fdr	49	39	56	56	24	40	22	48	29	37
AGCGTTGGTTTGTAGG	ref_1762_fdr	49	40	58	65	35	56	37	52	46	51
ACTCCTTTGTGAATGT	ref_1762_fdr	87	36	82	82	34	80	44	49	34	63
TTTTGTTGTTTGTTGA	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCATTTCCGTTA	ref_1762_fdr	212	104	282	201	111	194	138	216	113	197
GTTATATGTAGGTAAC	ref_1762_fdr	6	3	9	8	4	5	4	8	1	7
ATATATCGTTTGGTTC	ref_1762_fdr	210	88	266	201	94	191	112	207	112	189
TGACTGGTTAAGAGCA	ref_1762_fdr	159	72	181	177	73	138	62	170	90	129
TTTGACCCTCCCGCTC	alt_1762_fdr	44	24	62	45	26	56	33	47	30	55
GATTTCTCCACGTCAG	ref_1762_fdr	20	9	18	7	7	18	7	22	8	11
CTACGTGCCACGTCAG	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCCGTAATTAATG	ref_1762_fdr	71	53	113	72	54	75	52	66	50	71
GGAGGCTTTGGGAGCG	ref_1762_fdr	81	52	92	82	40	93	50	61	48	70
CTTCGTACGTACTATC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCGGTATGCGTAA	ref_1762_fdr	73	70	81	79	60	76	76	65	67	62
TTGTTTTTTTGGTTCT	ref_1762_fdr	39	17	58	33	21	49	10	39	23	39
GCTCAAGAGTAGCGTT	ref_1762_fdr	28	11	26	20	10	27	15	25	20	15
TGGCGCAGGAGAGAGG	ref_1762_fdr	135	53	139	107	57	111	65	122	82	119
TCCCAGACGACCGGGC	ref_1762_fdr	26	9	35	36	13	26	18	25	9	24
ACGCTTCCTTAATTGC	ref_1762_fdr	8	4	13	17	14	17	3	10	8	11
TCGTTGGTCGCTGTTA	ref_1762_fdr	41	17	54	35	17	36	19	37	21	32
GTTCGGTATCGCTTGT	ref_1762_fdr	147	89	153	141	57	101	81	141	79	118
TCTCCGTCGTCCCATC	ref_1762_fdr	29	14	28	45	23	36	28	26	19	34
TGCAGCTACATAAGCG	ref_1762_fdr	64	38	79	73	39	67	46	59	43	61
ATATAAGCTTCGAAAA	ref_1762_fdr	119	50	142	104	39	101	53	95	55	93
TCGTAGCTACGATCTC	ref_1762_fdr	12	3	19	17	5	10	6	9	11	12
CTTGGTGGGAAGTTGT	ref_1762_fdr	27	9	33	27	17	32	15	29	16	18
ATCAGTTCTTATCGTC	ref_1762_fdr	59	24	52	49	28	63	33	42	27	41
GATTTTGGTGCAGTGC	ref_1762_fdr	12	10	8	16	4	17	13	11	9	15
CCGCTAGTCAGAGCTA	ref_1762_fdr	6	7	11	13	10	9	7	5	7	8
TGGAGTAATATTCGTC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CACTACTCCCTTCCAC	ref_1762_fdr	3	1	2	1	4	8	7	1	0	0
ATCCCTTTTGCGGCCC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
AATCAGAGCTTTGATG	ref_1762_fdr	1	2	6	3	3	2	1	4	6	3
CCGTTATGTATGCGCA	ref_1762_fdr	32	24	32	43	17	44	16	26	24	33
GCAGCAGATGTGACAC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTCCCCCCCCCAT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTACAGGTTAAACGAC	ref_1762_fdr	38	26	60	46	28	56	18	56	19	32
TAATGACACGCTTCAA	ref_1762_fdr	213	93	250	200	98	192	77	194	95	181
CCGTGATTGTCTTGCA	ref_1762_fdr	23	10	24	16	16	19	10	17	13	15
TCGACGGCTCCTGCGA	ref_1762_fdr	44	27	67	56	30	56	32	50	28	49
GGCGGTAAACATTCGG	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TGTGACAAGGAATGGC	ref_1762_fdr	66	39	98	81	38	74	31	82	27	63
GACCATTCGGGGGTAT	alt_1762_fdr	38	12	44	52	24	33	18	40	26	23
TTAAGTGCTTAGCGCA	ref_1762_fdr	45	21	66	44	21	46	30	39	33	50
CGGTGGATGATTACGT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
ATTACAAGTAGCTCCG	ref_1762_fdr	111	47	137	137	38	116	45	118	59	83
GAGAACTTAATGCACG	ref_1762_fdr	62	34	96	70	33	70	47	71	32	57
TTCCAATTGCGTTTGC	ref_1762_fdr	57	23	86	65	31	51	37	67	26	46
TACGGCAGGAACACTG	ref_1762_fdr	22	15	41	39	19	31	7	25	20	24
GAATCTGCCGTTTCAG	ref_1762_fdr	25	13	31	20	17	22	20	14	15	21
GCCATAGGTTGTGGGT	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTATATTGTTGCTCAC	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
TGGTACTTAAGTCGAT	ref_1762_fdr	36	19	50	34	22	42	22	31	29	32
CCCCGGTGGTTAAGGG	ref_1762_fdr	107	74	146	102	67	98	61	98	60	106
TTGAAGTGACGAGAGT	ref_1762_fdr	102	41	105	91	34	97	44	94	50	74
CGTACTGGGGCCAGAT	ref_1762_fdr	29	16	43	35	15	26	20	43	24	29
TAGGGTGCGGTCCTAA	ref_1762_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGGTCGGGCGCTG	alt_2208_RC	4	22	10	3	30	2	26	5	28	6
GATGGCACGACCTTGC	alt_2208_RC	6	11	11	16	11	5	3	7	17	2
ATGAGTCTTCAAACTA	ref_2208_RC	456	625	530	503	622	421	632	461	683	411
AGGGGGCTACCCTGGG	alt_2208_RC	30	40	55	31	42	28	39	28	45	23
CTTCATGTTATGAGAT	alt_2208_RC	52	97	65	50	72	52	74	61	88	44
AAAACGCGCTCTTCTA	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
GCGGTACTCGAGCCTT	alt_2208_RC	16	23	16	21	24	21	19	23	25	19
GTGTCTCATGACTTCC	alt_2208_RC	21	15	24	35	32	17	26	24	34	16
TCAGGCTTTCTCTCTG	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
ATGCGCAGCCGTTCCC	alt_2208_RC	12	29	30	26	28	17	41	26	29	20
TGGATACGTTATTCCG	alt_2208_RC	22	22	31	25	29	15	23	20	27	17
CTAGCGTACTCCATGT	alt_2208_RC	16	33	15	14	36	22	33	16	48	13
TGTCCTCCCTCGCCTG	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
TTCACGCTGGCTCTAC	alt_2208_RC	27	59	38	42	46	26	45	39	49	29
CAGCGTGGTTTTCTCA	alt_2208_RC	36	39	33	37	38	28	37	29	47	29
ATTTGTACATCACATC	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTCTCCACACCT	alt_2208_RC	12	26	13	21	38	10	32	9	35	9
ACCGTAATCCACGCCG	alt_2208_RC	42	51	53	52	71	47	58	45	72	35
TTACCGTCGTCAGACT	alt_2208_RC	104	167	111	104	128	86	157	76	158	83
TGGGTAGATGCTATTT	alt_2208_RC	16	11	15	14	10	12	17	10	17	12
TGTTCCCAACGAGTGG	alt_2208_RC	33	35	32	29	15	18	21	23	19	18
CGGATAACATCGCTGT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTACACTTTTTG	alt_2208_RC	67	65	61	61	68	39	65	36	78	54
ATTACAACGCTCTCAT	alt_2208_RC	19	19	23	19	19	9	23	15	16	11
GTCACTCCCATGTCTC	alt_2208_RC	2	4	2	3	6	0	6	1	3	0
GTTTGCCCCGCAGCTA	alt_2208_RC	9	5	9	16	9	13	12	12	19	12
CGACCCTGAGTCTGCT	alt_2208_RC	5	7	5	4	7	4	5	3	13	5
GGCCTAGCATAAATGT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCTTCCGGCAAG	alt_2208_RC	6	3	4	3	4	7	7	7	4	10
TGTTGCATATGAACAC	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
TTCGTTCGAAGTCCTG	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
TGCATTTGAGACCGGA	alt_2208_RC	53	56	53	57	82	52	58	40	62	39
GGACGACCGACGCTAT	alt_2208_RC	71	81	78	69	90	67	62	59	68	61
TTTGCGGCTTGTAGGG	alt_2208_RC	49	48	43	37	56	33	61	44	44	34
ACTTATGATATTATGA	alt_2208_RC	10	9	6	15	13	14	19	13	13	5
GGTTCCTCAAATACCG	alt_2208_RC	44	60	65	41	47	37	58	40	55	43
CTGCGTCTGAACCAAC	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
GAAGTGGTCATCGTCT	alt_2208_RC	36	24	25	21	32	18	32	32	21	19
CACGCAATTTACCCAT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
GCTAGGTTACTTCAGG	alt_2208_RC	65	102	104	87	111	69	112	74	137	77
TTGGCACGTTGCTGAT	alt_2208_RC	4	5	8	4	10	7	8	8	7	6
CGCATTCATAGCTATG	alt_2208_RC	29	62	44	48	51	51	63	35	55	33
AAGCTAGGTCGCCATG	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
GTTGGATTCCTGGAGA	alt_2208_RC	59	70	77	64	64	48	69	63	81	56
CTCAATAAGGGGGGGA	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
GTAGGATATGCCTTGT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
CCGTATGGTTGTTTCT	alt_2208_RC	16	32	26	26	22	20	45	25	37	25
CCGAGCACGTTACGTT	alt_2208_RC	17	24	15	12	17	16	4	9	14	16
TATCACAGGCACCTGT	alt_2208_RC	26	32	24	35	42	31	39	27	44	25
TATACGGTTACTCAAG	alt_2208_RC	59	59	53	49	66	53	65	48	54	32
GCACACAGGATGAGTC	alt_2208_RC	39	53	53	35	46	36	65	29	76	42
TCTCTCTTCCACGCCT	alt_2208_RC	7	13	16	6	9	6	7	6	19	7
ACGGTGGTTCTCCTGT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
CGGTCACCGTACTCTG	alt_2208_RC	20	22	28	22	35	14	21	22	31	15
GGCGGAAGCGTATGTC	alt_2208_RC	49	46	60	49	58	57	51	46	43	42
ACACATCGCCCTGATT	alt_2208_RC	7	2	3	5	8	7	10	5	6	2
GCAGTGGATACTGGAT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
CCGTGCGAATACCTGA	alt_2208_RC	3	8	11	3	8	10	11	4	5	4
CTCGCCGCATGTCTGT	alt_2208_RC	32	45	40	31	42	36	55	30	48	29
CGCCAAATCCGCCCCT	alt_2208_RC	2	4	1	0	1	1	5	0	7	3
AATAATCTGCGTATCA	alt_2208_RC	15	23	14	18	28	22	17	21	40	11
CACTTCCGTACCGGTT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
GCACGCTGCGGTAGCT	alt_2208_RC	9	10	19	6	14	12	16	12	15	8
ACCTCTTACTGCACTT	alt_2208_RC	35	45	57	52	72	45	54	50	53	44
CTGCTGTACATTGCCC	alt_2208_RC	15	15	17	9	17	20	26	8	17	6
TTTATGCCACGCGCTA	alt_2208_RC	34	57	55	49	43	37	40	34	57	39
TGTGTTCAACAGGGAC	alt_2208_RC	4	2	2	5	2	6	4	2	3	3
CGCAGGGTTATTGGGT	alt_2208_RC	50	47	50	37	45	41	58	47	58	30
GCACAGGACCTTAGTT	alt_2208_RC	7	16	3	4	5	7	14	7	6	3
ATTCGAGTACCATATG	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
TTGGGGGGGCGCCTTG	alt_2208_RC	6	4	9	6	2	5	10	4	6	6
GACAGCACCGTTCGTA	alt_2208_RC	23	21	32	18	24	16	35	20	26	22
AGGAATAACTCATCTC	alt_2208_RC	36	31	45	45	40	35	53	35	52	27
AAAATCTCTGAGGTAT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
TGTTATGACTGCTAAG	alt_2208_RC	27	56	51	29	28	38	49	33	47	38
ACGGTTCGCAACTTGT	alt_2208_RC	31	68	48	41	72	34	78	31	71	27
TCTATAACGCCGCTAT	alt_2208_RC	9	23	14	16	27	10	36	6	28	9
ACTTCCCTTCGTACGA	alt_2208_RC	0	0	0	0	0	0	0	0	1	0
TGATCCAACACCTTCG	alt_2208_RC	12	22	21	17	23	16	31	14	15	15
GCCATTACACGGCACT	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
TCATTACTTGATAACA	alt_2208_RC	13	16	19	9	8	12	14	16	23	8
TCGAATCGGCCTCAAG	alt_2208_RC	62	94	80	59	59	71	86	51	117	50
ATGTCTTTTATTTAGG	alt_2208_RC	54	59	47	46	49	38	45	46	59	31
AGATAGGCTTGGATGA	alt_2208_RC	2	4	7	7	5	2	6	2	4	3
ATCTCGTAGTACTGGC	alt_2208_RC	10	15	18	9	22	13	22	12	21	10
CTTGGACTTAATACAC	alt_2208_RC	0	0	0	0	0	0	0	0	0	0
TGAACCCAAGTTATTT	alt_5753_new	41	50	53	49	49	46	34	35	38	50
TTTATCAGACGGTTCA	alt_5753_new	56	67	78	74	75	65	66	50	79	66
AATGAGCCATGCTTTC	alt_5753_new	0	0	0	0	0	0	0	0	0	0
GCGGTTGCTATTGTCG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
TTACGGTTCCGAACAA	alt_5753_new	20	31	35	27	26	28	17	12	40	26
CACATATGTATTATAA	alt_5753_new	12	14	13	9	13	7	4	11	15	11
CCTTTAGCATATGTTA	ref_5753_new	70	105	94	81	136	87	114	100	107	66
TGTCAATAGATTGCTT	alt_5753_new	3	6	13	7	7	2	5	2	5	8
CCAGTCGGTAAAATCT	alt_5753_new	2	7	9	3	11	3	6	1	10	2
TGCTAAATACCCCCCC	alt_5753_new	20	38	5	10	35	14	30	12	29	9
TGTTTACTAGAACTTT	alt_5753_new	638	758	782	616	725	675	754	633	853	625
TCTGAAATTAGTGACA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
GTCATGCAATGCCTAG	alt_5753_new	14	15	13	13	14	15	17	10	18	30
GCTCGCGGAGCGATCC	alt_5753_new	0	0	0	0	0	0	0	0	0	0
GCTGGTCGGACATTGC	alt_5753_new	28	52	39	36	45	26	48	45	55	43
GTGATCTTTCGTTTTT	alt_5753_new	35	19	22	16	24	24	25	16	23	32
TTCAGACACTCCGAGG	alt_5753_new	16	45	25	18	33	15	42	24	40	12
TTTTCGGGCTATTGGA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGTGTACCCGC	alt_5753_new	0	0	0	0	0	0	0	0	0	0
CCCTAACCCTAGGTCC	alt_5753_new	0	0	0	0	0	0	0	0	0	0
AGACAGAACTGGGCTT	ref_5753_new	29	34	33	28	34	27	38	24	33	26
CGTAATTGGGTGGCCC	alt_5753_new	35	34	27	31	43	36	42	20	29	28
TATTTCACATCAATTT	ref_5753_new	8	7	5	4	2	5	4	1	5	3
ACGTTTCATGTCTGGT	alt_5753_new	19	22	30	32	18	23	13	14	18	10
CGTCGAAACATCTGTA	alt_5753_new	2	1	2	6	4	1	3	6	4	0
CTAGTTGATGTAAGCG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
TAAATACACGCCTATT	alt_5753_new	151	158	150	148	136	136	155	102	185	108
CTACGTTTTTGTATCT	alt_5753_new	130	114	138	113	131	111	107	116	124	93
AGTCCCGGCTGCGGCT	alt_5753_new	2	12	8	5	4	2	5	3	12	6
TAATTGACATTACTGC	alt_5753_new	31	18	23	24	18	25	18	35	18	27
ATATAACGAACGGCCC	alt_5753_new	24	14	23	10	12	25	12	25	14	17
CCTCGATATTTGGGAA	alt_5753_new	152	188	216	190	185	176	193	159	207	160
GGTAAGTGCTTGAGTT	alt_5753_new	60	53	56	47	49	46	48	41	52	39
TCGGTATGGCTGTATA	alt_5753_new	42	33	47	45	45	43	42	33	44	28
TTTTCCCCCTGGCCTC	alt_5753_new	42	51	52	35	49	52	46	31	53	38
TCATAATTGTCACCGC	alt_5753_new	0	0	0	0	0	0	0	0	0	0
AATCTTGTCGCCGTTT	alt_5753_new	0	0	0	0	0	0	0	0	0	0
ATCTTAATATGGTGGG	alt_5753_new	86	62	85	71	83	62	81	82	65	83
TTCGTTGCCAATTATC	alt_5753_new	0	0	0	0	0	0	0	0	0	0
CTATATATATACGTAG	alt_5753_new	41	25	39	31	31	39	44	46	33	33
CGCGTAGGGGTGATAA	ref_5753_new	62	80	81	78	77	70	73	68	76	69
GCGTCTACCTCTTGGG	alt_5753_new	22	20	31	20	22	19	30	20	30	19
TCCGGATACTTAGCTC	alt_5753_new	59	63	59	71	69	57	64	52	73	60
CCCCTTTGTCGTGTGG	alt_5753_new	32	31	21	17	18	18	20	14	21	20
CGGTTCTTATCGTCCG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
ACAGTTCAGGGTTAAC	alt_5753_new	62	76	55	55	85	61	109	70	84	72
GATGAGTCGCGTACGC	alt_5753_new	27	32	35	39	20	33	38	25	43	25
TAGCGTCCGCACCATA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
AAGCTTCCCCGTCTTC	alt_5753_new	0	11	1	0	4	0	5	0	9	0
TAGGTTCGATGGTGTC	alt_5753_new	32	35	39	42	37	41	40	40	55	27
CTATCACTGTCCGAGT	alt_5753_new	2	13	7	7	5	10	10	9	8	2
TTGAATGTTTCCTACC	alt_5753_new	3	12	9	6	21	9	17	3	13	4
CCGCTTAGCATCCCTG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
ACGTGTGCGCGTGGGA	alt_5753_new	35	51	68	69	49	59	49	57	51	62
TGCTCTAGTATCTGTG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
TAGTATATATAGTCTG	alt_5753_new	9	14	3	8	6	11	9	16	8	3
TGCTCCTTTGTTATGG	alt_5753_new	82	67	78	61	62	76	51	60	72	71
TTAAGCTGTTAAGCAG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
GTGAATCAAACAGATA	alt_5753_new	22	21	31	47	12	17	27	57	21	23
TTTATCTGCCCCTGTC	alt_5753_new	11	12	11	5	13	12	12	11	14	10
GAAATCGGTTGATGTC	alt_5753_new	41	44	46	48	32	47	39	45	42	45
GCTACCCATGGTGTTT	alt_5753_new	0	1	1	0	1	1	1	0	1	2
TCCGGTACGGCAGTAT	alt_5753_new	29	19	20	17	17	15	15	19	13	4
AAGTTTTTGGTACATA	alt_5753_new	36	22	18	14	22	18	28	14	33	19
CTACGTCCTTTTGTCC	alt_5753_new	31	33	34	26	31	25	29	21	27	33
TTAGCGTTGTGTTTGA	alt_5753_new	21	30	23	25	26	46	35	24	26	24
TGCGGGGACTTAGTGC	alt_5753_new	34	38	43	32	42	42	39	40	52	26
CCGGTTTCATCTAAGT	alt_5753_new	0	0	0	0	0	0	0	0	0	0
CTTTGCAATTTCATTT	alt_5753_new	20	12	17	16	14	10	20	18	21	20
AACCCGCACCCGGGCG	alt_5753_new	10	6	18	13	6	6	3	4	6	10
TGCGTAGGCTGGCGTT	alt_5753_new	0	0	0	0	0	0	0	0	0	0
TAATGGGACTCGGTTT	alt_5753_new	24	19	25	28	12	19	25	24	16	21
GCACTACGATGATTCC	alt_5753_new	10	5	10	6	10	6	7	12	5	5
ACACTTCAACAACCAT	alt_5753_new	13	24	15	21	18	11	11	10	23	15
TTCCTATATCGAGGCG	alt_5753_new	96	74	99	96	84	88	75	79	96	98
TGGCCTTTCTCGCTAG	alt_5753_new	34	22	44	17	25	21	22	34	32	26
CGCAGTCCTGATTCGC	alt_5753_new	34	32	39	27	56	29	32	16	31	20
TCTCGGATGCTCTTCG	alt_5753_new	68	35	61	58	28	38	54	42	36	44
CGTTGGCCGTTAGCTA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
TTTAAAATTGTTACTT	alt_5753_new	44	38	58	41	43	42	35	27	48	32
CGAACTCGGATTAACA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
CCGCAATCTCGTCCAG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
AACGCGATTTTTCGTG	alt_5753_new	3	2	9	4	6	5	3	3	3	2
GCTTATACCTTTCTGA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
AGGCCTTTTTGGCTAG	alt_5753_new	0	0	0	0	0	0	0	0	0	0
GGCCTGCTACGCCTTT	alt_5753_new	31	43	28	23	48	28	43	34	46	22
TGTTTACTATAACTTT	alt_5753_new	0	0	0	0	1	0	0	0	0	0
TACCTCAAAGGCGTTA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
CTGATCAGTAGGGGGC	alt_5753_new	21	22	16	19	22	16	24	22	13	17
TATGTGAGTGCAGGTG	alt_5753_new	76	117	121	83	111	108	127	85	129	89
TACCGGGAGCCTGGTT	alt_5753_new	0	0	0	0	0	0	0	0	0	0
TTCGCCTTGGGGATTT	alt_5753_new	14	9	14	3	7	15	9	5	5	13
GCGAGACTGATGCCCC	alt_5753_new	33	37	50	55	42	41	46	54	35	33
GGTCAACCAGCTCATA	alt_5753_new	9	15	7	11	15	3	17	10	15	10
CCGATTTAATCTTAGA	alt_5753_new	0	0	0	0	0	0	0	0	0	0
TCGCAATCGTCGCGAT	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TGCACGCCTTTGTTTG	alt_2349_upstream	100	93	124	121	92	84	113	96	104	104
CCATAGATCTTAGTGC	alt_2349_upstream	6	18	9	7	18	4	24	5	25	2
CCCACTCCGCAATGCA	alt_2349_upstream	11	11	5	9	4	8	6	8	4	8
GCTATGCGCGCTGTTG	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TTACTATAAGTGTATT	alt_2349_upstream	6	12	4	4	4	10	8	7	15	3
TTTGCTACGGGTTACA	alt_2349_upstream	66	67	92	64	89	74	98	55	97	60
TTTGCAGATACACCTG	alt_2349_upstream	53	60	76	55	52	52	62	57	39	39
CGACTCGCTTTGGCTA	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
GCACGTCTTTTGCTAG	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTATATGCTGGAT	alt_2349_upstream	9	20	7	17	6	20	11	12	6	13
TGGCACAGGGGGTGGT	alt_2349_upstream	22	18	29	21	22	26	19	15	17	19
CGCCATCGTTTTGACA	alt_2349_upstream	44	52	53	62	66	54	48	38	43	43
AGCTTTTCGTCAATTT	alt_2349_upstream	37	30	40	25	16	24	26	27	29	28
TTTGTAGTGCCAAACT	alt_2349_upstream	11	9	11	7	17	7	11	5	4	5
GGTGGTTCGTTCAATT	alt_2349_upstream	22	27	37	27	25	31	21	28	22	21
TGACGTTATAGATTGT	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
ATCAAGGAGAGGCATA	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
CCACCAAGCCATGTAA	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TATACTTACCTCGTGT	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
AGGCGATTCTATACAC	alt_2349_upstream	43	34	40	42	27	46	37	49	54	52
ACGACCCGTGGATATA	alt_2349_upstream	40	36	53	48	57	41	39	43	49	41
AAATTTCACCGATTTG	alt_2349_upstream	7	11	13	10	10	12	9	13	7	14
ATAAAACAGGGTACTG	alt_2349_upstream	48	48	43	53	48	61	41	47	46	54
TGCATCATCACCGTGG	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTCTGCGCTCAA	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TAGATGCCTTTATCAT	alt_2349_upstream	69	71	68	73	65	71	53	62	74	65
GTTACTTCGCTGGTAC	alt_2349_upstream	8	3	5	8	3	12	7	15	7	4
CGGGGAGATCAACTCT	alt_2349_upstream	24	16	12	15	7	7	12	16	19	7
CGGAACTTGCATGTTT	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
ATTACCCGTCAGTTCC	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TTATTTCCTTTTACCA	alt_2349_upstream	36	26	44	37	23	46	35	35	28	45
CCATGTGGTACACTCC	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TTATATTGATTCGTCG	alt_2349_upstream	136	91	150	115	109	104	96	118	119	111
TCCCCTTTCCATGTAA	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGCACGGGCCAAT	alt_2349_upstream	18	18	26	31	32	13	21	10	32	17
TTTGGCAGAACGCACC	alt_2349_upstream	17	15	22	12	15	17	10	12	13	10
GCACTATATAACATTT	alt_2349_upstream	14	7	18	11	12	7	9	11	9	10
CGTGTTGACCCTGTTG	alt_2349_upstream	115	170	163	118	149	104	149	123	146	70
TCTCTCACATTATCCC	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTTTACCTGCCCT	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
GGTAAATCGACGGGAG	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
CTAAATCCTCCTGATG	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGACATTTTACA	alt_2349_upstream	101	89	102	100	74	86	91	92	99	72
TGGTTGTTGCTCTTTC	alt_2349_upstream	75	80	111	83	102	77	79	71	85	68
TAAGTGATTGCTTCGC	alt_2349_upstream	4	5	8	6	4	5	4	1	7	4
ACTCGACCTCCGATAC	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCCCTCTACCTTT	alt_2349_upstream	8	14	16	12	14	6	15	8	17	11
ATCTGTACCCTTTCTT	alt_2349_upstream	19	12	20	16	11	9	12	18	11	7
AGTAGAGGTGAAAGTG	alt_2349_upstream	28	24	18	26	33	27	28	34	36	23
GAATCCATCTTCAGGC	ref_2349_upstream	51	32	30	48	53	54	35	35	52	31
TTCGACGCTCTTTATT	alt_2349_upstream	50	53	78	78	72	66	73	69	67	53
CTTACTCTGCTCTCCA	alt_2349_upstream	18	8	12	7	12	10	11	10	8	11
GGTGCGTTCTTCATGT	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAAATTTGAAGCT	alt_2349_upstream	12	9	17	13	7	6	12	10	9	15
CGCGCCAATCTTATCG	alt_2349_upstream	28	20	35	35	27	38	10	34	21	27
CTTTGGTGTACTAAAC	alt_2349_upstream	62	76	82	77	77	71	56	79	80	42
GTTTCTTTGATTCTAT	alt_2349_upstream	24	26	22	25	22	21	25	28	25	21
GTGGCACTGTCCTATA	ref_2349_upstream	58	60	84	50	55	46	50	46	47	33
TGACGCCAGCTCCCGC	alt_2349_upstream	30	24	33	36	33	34	35	29	39	42
TAACTCGACTAAATAT	alt_2349_upstream	12	4	12	10	9	13	14	13	13	9
TATTTTCGGAACAGAC	alt_2349_upstream	19	14	30	24	20	16	18	13	19	7
AAAGTAAGCATCGGCT	alt_2349_upstream	4	3	8	6	5	4	7	8	6	9
AGGATTTAGCAGGGTT	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
CTAGAGAAATTACGAC	alt_2349_upstream	0	0	0	0	0	0	0	0	0	0
GATATGAGCCGCGCAG	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTCATTTCGTCATTTC	ref_2582_fdr	38	47	53	43	51	36	62	50	59	36
ATATACCAATGCTTGG	ref_2582_fdr	8	19	22	11	24	10	24	10	19	10
GGATTAGTCCCTGGCT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CATTGTGCCAGTTTAA	ref_2582_fdr	3	6	6	5	7	10	13	4	11	12
TATTGAGCAATGTCTA	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTTGGAGTTCTCA	ref_2582_fdr	6	10	14	11	16	6	13	7	9	3
TGCAAGGTGGCCATGC	ref_2582_fdr	0	2	2	4	4	5	6	4	9	2
GGTTCTCTCCTCCAAC	ref_2582_fdr	6	19	22	15	22	19	17	13	26	18
AGTCATTTGATAGGGA	ref_2582_fdr	17	19	17	9	21	16	24	16	21	10
GGAAAATTTGGCCTCA	alt_2582_fdr	19	10	26	16	16	16	18	13	24	17
GGAGGTTTAAGCTATG	ref_2582_fdr	22	38	17	12	41	21	40	25	35	16
GATCAAGACCTTTCGC	ref_2582_fdr	33	88	33	31	79	36	88	47	74	36
AAGAGTGTTTTTCCAT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GAGCAGAAGCCATCCT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTCTTACCGGGTA	ref_2582_fdr	11	7	9	2	13	4	11	10	11	4
TCTGCAGTCATTTTGC	ref_2582_fdr	26	48	29	35	47	24	54	24	52	16
GGTGTATCAAAGACTG	ref_2582_fdr	16	24	22	13	18	10	15	10	29	18
TTGTTGAAGCCTGAAC	ref_2582_fdr	39	65	35	43	72	33	60	33	63	33
TTTGTTGCGACAGCGG	ref_2582_fdr	6	4	7	2	5	4	4	2	3	2
TGCTATCTCTAACCTC	ref_2582_fdr	13	14	18	18	21	12	27	18	20	15
TTGCGTGCCGGGACCT	ref_2582_fdr	2	4	2	0	8	2	7	4	3	5
TCTGTCCCACTATTGT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
AAACCACTGCGATAAC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GGGGGTATTCGGTTAA	ref_2582_fdr	5	8	4	3	7	8	7	5	10	1
CATTTAGGCAGGCTAC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CCGTAGTTTCCCTGCC	ref_2582_fdr	46	72	48	35	68	31	63	42	66	37
CGGTGCCTCCGGTTTA	ref_2582_fdr	62	95	66	44	102	50	112	46	103	49
GTGTGCTAACTTAGGG	ref_2582_fdr	58	74	55	51	81	49	85	44	86	54
GGGTGCAATCAGGGGG	ref_2582_fdr	11	19	15	9	19	20	14	12	18	11
GGTAGCGTAGCGCTGC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTTCACGCCCTCT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TACTTGGTCACTGTGT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
AGATTACAACTGTAGT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTATACTGGGTTCTGG	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTGCTACCAGTGT	ref_2582_fdr	22	33	26	21	37	22	42	20	28	15
CGTCTAAGGTTGCCGG	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GAATTATAAAAGTACA	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCTACTTATTCCT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTTTAGCGTTGTTCAC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CGCCATGGTGAAGGGC	ref_2582_fdr	4	6	6	4	6	4	9	2	4	3
GACATACTATTTCTGG	ref_2582_fdr	3	3	2	2	1	0	1	0	3	1
GCACATAACGCCGATT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGTCGTGACTCTT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGTCTTCTGCTTC	ref_2582_fdr	11	8	2	7	8	4	12	2	11	8
GAAATTGGTTTTCTGA	ref_2582_fdr	42	41	43	46	57	24	48	30	54	28
TATGAGCCTCAATTTC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
ACATAGGTGTTCTTCA	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TAAATATTACGCCCTA	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCGGACAAGTGAG	ref_2582_fdr	5	10	4	10	14	5	11	9	9	3
TTACATTCTCTAGTCA	ref_2582_fdr	9	8	16	12	21	11	17	8	13	15
GCATATTATTCCTATA	ref_2582_fdr	4	9	6	6	6	4	2	0	7	1
CAATTACATCCCAGTC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GGAGGTGATTACGTAG	ref_2582_fdr	16	10	11	6	15	5	11	2	20	12
TGAGTTCATGCATTCC	ref_2582_fdr	7	14	14	10	14	13	10	6	19	5
GTAGTCAGATGTGATT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CAGACACTAACGCTGC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTCCTATACTTTG	ref_2582_fdr	5	7	3	6	10	5	6	3	6	5
TGGTAATTTAAGTCTG	ref_2582_fdr	23	39	22	17	26	14	46	18	28	17
CCGCGTGCGCCCTCAG	ref_2582_fdr	0	13	1	1	13	4	15	0	17	2
TAGGCTATAGGCCTGA	ref_2582_fdr	14	28	13	15	40	26	34	14	30	19
GTGAGGCCAGAGTTTA	ref_2582_fdr	43	51	48	32	60	45	48	19	67	28
GTAGCCGAGTGTTTTC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GCATTTGGAAAGTCCG	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCTGGATTCTAT	ref_2582_fdr	5	6	3	10	13	3	12	4	9	7
ATTAACAGCAGGGGAC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTATTATACCTGGGTC	ref_2582_fdr	6	12	3	6	12	5	7	7	7	6
TTTCGCGTCTTCACGC	ref_2582_fdr	67	93	88	74	100	59	130	65	117	62
CGTACGGCTTTGCTAA	ref_2582_fdr	0	6	1	3	4	4	3	2	4	4
CAGCCTTGAAAGTGCC	ref_2582_fdr	6	23	9	4	47	9	25	6	50	1
CCCTGGTGACACAGGT	ref_2582_fdr	18	50	21	20	35	14	41	17	45	15
GGCAATGCGGAGTACA	ref_2582_fdr	16	44	42	30	34	26	54	29	52	21
CGACCACTTCGCCCGC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTCCTCCCACCT	ref_2582_fdr	1	6	2	5	8	1	15	3	11	3
TCGGGGGGAGAATTAA	ref_2582_fdr	13	6	9	9	18	10	16	8	22	11
ACAGTGCAATGTACGA	ref_2582_fdr	7	15	4	14	14	7	19	8	11	7
TCTTTCGTCTGTGTCC	ref_2582_fdr	20	23	24	16	22	13	21	14	27	18
TTTGATTCCTCTTCTT	ref_2582_fdr	20	28	23	18	31	20	38	15	26	24
ACATGCTGTGGCATGC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TAATACGTCCTATGCA	ref_2582_fdr	30	69	36	46	63	32	71	32	86	38
ACCGCCGGTAGATACT	ref_2582_fdr	6	7	2	3	5	5	11	6	10	4
AGCCATGGAATGTTTT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TAAGATCGTAGAACAT	ref_2582_fdr	14	31	15	12	20	12	22	16	33	13
TTCCATGGTGACACTT	ref_2582_fdr	4	9	5	5	2	1	7	2	4	4
TGCCTCCCGCCCAGAC	ref_2582_fdr	18	50	31	20	58	21	64	21	50	10
ATGGTTTCAGTTGTTG	ref_2582_fdr	39	49	50	44	59	40	66	47	85	36
GTAGTCAGATGAGATT	ref_2582_fdr	56	64	80	60	108	61	88	45	95	46
AGCGGGTAGGTGAGGC	ref_2582_fdr	4	14	6	6	8	11	19	11	11	7
TAGGTGTTATTCACGG	ref_2582_fdr	41	71	50	46	62	30	81	56	82	40
AGTTCCTGTTGCCTGG	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGTGAGCCTTAGC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GTCACCCATATATCCA	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TTATCCTTCCTACTAC	ref_2582_fdr	43	88	68	57	97	49	99	46	101	45
TAAAATGTCCGCACGC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCTGGAATGTTTT	ref_2582_fdr	39	67	61	32	78	49	84	32	92	39
CGGTGCGCGACTCGTA	ref_2582_fdr	0	1	0	0	3	0	3	0	2	0
TAAGAACTGTCTCATG	ref_2582_fdr	27	39	47	30	47	20	59	36	43	30
ATTAATACATACTTTT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTAGGTGTTAGCA	ref_2582_fdr	42	81	45	36	91	30	82	27	80	34
GCGCGCCAGTTATAGT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
ATTACATTGCTCGTTG	ref_2582_fdr	33	58	47	39	29	39	44	42	50	33
GTAGTATCAGGGCTTC	ref_2582_fdr	18	34	12	19	38	18	28	18	39	15
CCTGCGACATTCGAAT	ref_2582_fdr	18	28	16	21	30	22	24	21	30	14
AATTGACCCATTCGAT	ref_2582_fdr	19	35	28	23	40	15	42	18	42	19
AACCCCGCCCTCCCTC	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
ATGAGTATTTTTATAC	ref_2582_fdr	0	1	0	0	0	0	0	0	0	1
TGTCACTGGTTGCACT	ref_2582_fdr	23	27	19	18	19	8	23	23	30	12
GCGTCCCTTACTTGTT	ref_2582_fdr	3	9	5	3	14	6	6	2	8	4
TCCGTCGTTTTAGGAT	ref_2582_fdr	7	11	14	10	15	10	37	12	24	6
ACCCTGGAGCGAGCTA	ref_2582_fdr	9	10	5	7	8	11	4	4	6	7
GTCTAGCTCGCATGGA	ref_2582_fdr	6	3	6	1	5	2	12	3	6	1
ATCAGTACAATATACG	ref_2582_fdr	2	5	2	2	3	5	5	4	5	1
AGCTGCTTAGTCACGC	ref_2582_fdr	97	120	106	101	143	75	116	85	148	81
CCAGCCTCGATTACGG	ref_2582_fdr	4	19	1	3	18	5	19	2	28	5
TCCTGCTTCCTGGACT	ref_2582_fdr	57	105	75	55	95	52	93	55	114	67
TTCTCTGATTTTCGTT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CATTTAGTTCACCGGG	ref_2582_fdr	4	10	4	5	7	6	2	6	2	3
CACACGCTCTTCTCCA	ref_2582_fdr	5	3	4	2	2	3	2	4	5	3
TGACCCTCTTTTACCA	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
CGATCCAGGCTGAACC	ref_2582_fdr	0	1	0	2	1	0	5	0	5	0
TGCCGTGGTTGGCTTT	ref_2582_fdr	30	44	28	22	53	15	44	28	32	20
TATATGGATTTATAGA	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
TGAATTTAACAGGTAC	ref_2582_fdr	3	6	7	6	9	6	16	3	8	6
TGGTAGCTGCTAGGCT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCGGACAGATTGA	ref_2582_fdr	62	107	83	78	91	71	136	82	120	72
CCCACGTCCTAGCTGT	ref_2582_fdr	17	12	12	14	23	11	23	10	23	16
TGCTTGACGTCGCTAT	ref_2582_fdr	6	13	16	7	16	5	15	7	12	8
ATCGGCAGGGCTAAGT	ref_2582_fdr	30	42	28	30	39	23	25	32	46	23
TTGGACGGATTCTAGT	ref_2582_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCTGGCATTTAGG	ref_2582_fdr	13	14	13	15	23	12	15	8	14	3
CTAATTATCCGGCTAG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
AAGCGGATGTACCGTT	ref_5486_reverse	68	69	78	73	68	56	56	65	58	65
GAGTTGCGGCGCATTA	ref_5486_reverse	14	25	20	18	12	8	15	23	14	17
CACTTTAGGCCTCTAA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TCCAACTCCCCGCCGC	ref_5486_reverse	5	15	0	3	22	6	22	0	14	5
GCAATTCTGCTCCGAA	ref_5486_reverse	12	8	14	15	15	17	16	9	17	14
GTGATTCCATACATTA	ref_5486_reverse	184	171	231	207	194	171	187	191	198	198
GGCAATACTACCTAAG	ref_5486_reverse	3	2	4	13	6	2	1	0	6	6
AGAGAACCAGACTAGA	ref_5486_reverse	39	32	49	31	47	38	39	52	41	34
GACCATCTCATACCCC	ref_5486_reverse	7	3	13	14	7	16	20	8	9	17
GCTGCGTCCGAACTCA	ref_5486_reverse	11	18	9	13	15	12	16	19	14	13
CCATATGATCGACTCA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
AAGCGGTTCTATGAAA	ref_5486_reverse	33	35	34	32	44	39	39	34	35	34
ATTTTTTTCATTAGGT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGTAAGCGAGGGT	ref_5486_reverse	17	14	17	12	14	7	10	9	12	8
GCCAGCTATTCAGCCA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCCACCGTGCGCCGCA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
AGAAGTGTTCTTGTTT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCGATGTCAAACT	ref_5486_reverse	252	277	336	272	334	251	323	264	307	249
GTTCCTTCTCCAAAGA	ref_5486_reverse	56	50	86	80	76	56	78	62	88	61
CACTGTCCATTGAATT	ref_5486_reverse	2	5	6	5	2	3	8	8	6	3
CCATTTGAATTGAAGA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCATGCCGGTTACCCT	ref_5486_reverse	8	7	5	5	14	3	9	7	9	1
ATAGAGTGTACGTACG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
ATGTAATGTACCATGG	ref_5486_reverse	91	55	88	88	71	83	57	82	62	71
CTATTTGGTTCACATC	ref_5486_reverse	40	46	57	42	42	27	55	64	43	39
CGGATAGTCGTGTAGT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CTTTACGATTTCTTCT	ref_5486_reverse	181	134	204	210	134	203	137	174	150	150
GTTAAACGCTGGTGAT	ref_5486_reverse	11	6	5	9	10	14	9	10	10	9
GGTTATTTAGTATTCA	ref_5486_reverse	110	77	137	98	91	100	101	107	98	104
GTACGACCGCCATCCG	ref_5486_reverse	25	26	36	33	34	29	26	52	32	30
ACGTAAGGATGTCCTC	alt_5486_reverse	271	255	327	282	271	290	271	273	292	238
TATATTAAACCCAATT	ref_5486_reverse	20	17	28	23	15	23	23	21	13	19
AAATTTTGTCCCTCGT	ref_5486_reverse	0	0	0	1	2	0	3	2	0	1
TGTATTCAGTGACTAC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCACTGCCCGTTT	ref_5486_reverse	13	35	20	17	53	14	39	16	33	14
GTTTAGTCGGATTGAG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCTTAGTGGATAGATA	ref_5486_reverse	30	33	42	35	33	40	39	30	33	22
TTCCCTTTCCGCAATC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTCTCCTGTCTA	ref_5486_reverse	28	21	25	26	21	34	23	25	28	34
TTACCAGGTCATCCTG	ref_5486_reverse	12	2	9	11	5	7	3	4	9	3
TCTCAATTTTTTTACT	ref_5486_reverse	52	35	62	52	50	47	51	47	37	42
GTGCGGCCAATGCTAT	ref_5486_reverse	92	86	122	89	104	92	94	71	79	86
ACTAGAATCGTCGGTC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CTCCCGTTTCGGGGTC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTCACGCAATTG	ref_5486_reverse	36	34	48	37	45	51	24	43	46	33
TGTAAACCACGCTGGT	ref_5486_reverse	56	52	73	52	47	56	54	70	59	57
AGGTCATATTGCGCGT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TACCGGAAGGATTCGA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCTGAGTCATGCC	ref_5486_reverse	21	32	37	37	31	24	25	25	33	21
GCCTTGATACATTCCG	ref_5486_reverse	36	62	51	43	68	52	55	44	60	39
GACGACCGCGGGACGC	ref_5486_reverse	47	49	79	66	49	46	49	51	48	57
TTATTCTGAAACATCA	ref_5486_reverse	56	62	76	80	48	57	56	59	82	50
TTCGGTAACATAAGAT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCCGGGTCCTTCT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGCCAGCTCCGAT	ref_5486_reverse	7	31	13	7	31	6	31	7	27	10
AGGTATGCCGAATTGG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TTGCATGTACATGTCT	ref_5486_reverse	32	55	64	70	47	42	51	45	43	46
CTTAAGAAGCCTCCGT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TACAATTTCATATCCG	ref_5486_reverse	21	10	16	9	14	15	8	25	12	10
GTCTATGTTTAGGACT	ref_5486_reverse	6	4	9	6	7	2	1	6	4	3
TGGAGACGCCTTTGGA	ref_5486_reverse	85	91	118	123	63	96	83	96	79	80
GTCTGACATTCCCTAT	ref_5486_reverse	16	32	26	20	29	25	27	17	25	19
CGCAGGACGGCCTAGC	ref_5486_reverse	20	11	21	17	20	19	25	20	21	21
TCCATTAGGTAAGGGA	ref_5486_reverse	49	36	63	35	57	43	35	35	41	52
CAGATACCCGCCTACC	ref_5486_reverse	12	20	21	19	28	9	21	16	27	9
GGCTTAAGAAGACTGC	ref_5486_reverse	69	27	59	54	56	47	38	44	60	60
TCATCCCTCCCACCGT	alt_5486_reverse	2	1	5	3	0	2	4	4	5	0
AGAATCAGGTATCTAG	ref_5486_reverse	13	14	17	19	20	25	10	5	25	13
TGGTATGCCGAATTGG	ref_5486_reverse	20	12	14	13	12	12	15	13	12	7
TCGCGTAACCTTTGAT	ref_5486_reverse	13	9	12	15	9	15	12	11	9	15
ATACGTTTGTCCCAGG	ref_5486_reverse	35	23	48	31	34	29	35	32	36	34
GGCTGTGCATTCCGCT	ref_5486_reverse	52	47	64	61	46	53	60	54	91	57
AGAGTATTATATTTCG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTGCTAATAATCG	ref_5486_reverse	24	17	36	36	27	27	23	29	28	14
CAAGAAGGCCGATACA	ref_5486_reverse	85	9	74	80	9	63	8	69	16	52
GAGTACGAAGAACCTG	alt_5486_reverse	8	6	11	6	7	6	4	9	7	12
GGTATATGTCAGCTGC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTCGGCATTTTAC	ref_5486_reverse	8	7	11	13	8	14	7	4	14	16
GTCTTTCGTTTATTTG	ref_5486_reverse	77	82	88	72	70	79	78	64	73	54
ATCTCCGTTGTGATGT	alt_5486_reverse	4	5	4	2	5	4	3	7	0	3
AGAGCTTAAACTACGC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TACGCTCCCCGTCGAT	ref_5486_reverse	1	15	0	1	16	1	20	0	27	0
CCTTTCATCGCTCTGT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCTATCGCTGATCAGT	ref_5486_reverse	12	10	5	3	10	8	6	2	12	2
TACTCGTCGGAGATTC	ref_5486_reverse	100	91	128	108	99	109	117	114	110	113
ATTCCTCAGAGTGATC	ref_5486_reverse	23	24	38	33	22	11	24	31	26	25
TTTAGCATTTGTCTTG	alt_5486_reverse	168	187	208	167	160	179	151	160	172	145
TCGCGATGCGCATACG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTATTATCCCCTC	ref_5486_reverse	13	13	18	13	12	14	9	5	17	9
TTGAATTTTATTTTTG	ref_5486_reverse	2	2	8	4	4	5	6	4	4	1
GGCCACTGCTGGATTC	ref_5486_reverse	23	22	27	26	17	22	12	17	21	21
GTGTCCTGTCATGGCG	ref_5486_reverse	41	19	52	32	27	38	28	30	33	35
TTTCCGTAAACAGTAA	ref_5486_reverse	48	39	47	39	45	36	59	41	39	44
CTAATCAAGTACAGCC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTCGCCCACGTGG	ref_5486_reverse	10	12	21	18	9	13	10	12	12	8
GCGAATAGAGACTAAG	ref_5486_reverse	230	220	224	207	215	210	221	179	189	198
CTAGGATATTTTTTTG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GAAAGATTGCGTGCAT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GTACCTGAGCTGTTTC	ref_5486_reverse	27	33	41	34	42	33	44	40	45	26
TTTCGTGCTTCGTTAC	ref_5486_reverse	69	78	75	57	77	50	96	67	89	49
CTAGGATATTTTTTTT	ref_5486_reverse	56	63	57	60	56	45	57	45	47	46
CAGTTCTTGCGGCTCG	ref_5486_reverse	40	56	44	33	60	28	44	34	64	29
GTCACAGTTATACATT	ref_5486_reverse	35	38	55	35	37	35	41	38	42	42
TTTGCGACCTCCCAGT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
ACGTCTGGATGTCCGT	ref_5486_reverse	137	94	140	128	102	133	116	131	116	113
CGGAATGTTGCTTTGC	ref_5486_reverse	8	6	5	3	1	4	3	6	7	7
GATTAGAGCTTTAGGT	ref_5486_reverse	26	31	48	32	27	35	19	34	19	26
CCTCCAGCGGATCCTT	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCTGAGGTGCTGGTGT	ref_5486_reverse	107	89	118	121	124	115	110	93	136	97
GTACCTGTTTAAATAG	ref_5486_reverse	28	26	19	21	28	15	12	8	14	17
TCAGGTTTTATATTTC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCTAATCCCTTTGATC	ref_5486_reverse	7	4	5	5	5	3	0	1	1	3
ATCGAAGACTTGCTGC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGCTGGCTAGATA	ref_5486_reverse	19	21	22	26	15	15	26	16	32	28
CATATTGTGTCCGCAC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTTTCATTGCTAC	ref_5486_reverse	230	268	317	254	290	254	244	254	269	245
CCAGCTACTTTCCGGT	ref_5486_reverse	5	36	10	4	42	4	25	3	29	8
CGCGTTGGTCTTTTTT	ref_5486_reverse	49	42	63	47	40	43	44	59	35	45
CGTTACCAGTAAAATC	ref_5486_reverse	56	49	65	47	43	56	71	54	48	53
GTCTGGGTATCCGGCC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGTTTTTAAAGAG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCTTCGGCTCAAC	ref_5486_reverse	28	24	31	28	19	27	26	18	36	24
CAGGTCGTAGCGGTGG	ref_5486_reverse	39	45	37	33	49	28	70	44	59	39
TGAGCATTATCTAACG	ref_5486_reverse	92	75	78	86	91	70	81	78	77	81
AATCTGATTTTACGGG	ref_5486_reverse	107	87	150	129	98	113	121	105	95	98
CTCTCACTGCTTCCAC	ref_5486_reverse	12	11	17	21	20	16	17	24	13	10
AATTTATTTTCTCTGC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GTTACCCGCCCTGTGA	alt_5486_reverse	176	235	240	242	237	222	263	209	270	177
TGTTGAGCCAACTAAA	ref_5486_reverse	32	38	34	33	28	32	27	32	31	15
CACTAATGTCCCACGA	ref_5486_reverse	15	11	11	7	13	15	14	7	7	16
TGGTAATCTAGGATGC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GGGAGTAATGCACCTG	ref_5486_reverse	70	57	91	78	51	74	65	67	52	61
CCGTGCTCTTCGTACA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTAGTTTTCAGTA	ref_5486_reverse	53	70	84	83	61	61	66	58	58	73
CCGTGCACGCGGAACG	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TGACCGTTGGTTGGGC	ref_5486_reverse	3	3	3	2	6	4	2	3	2	8
TTACTGACACTCCTAA	ref_5486_reverse	50	57	69	60	53	35	66	35	76	55
CAACAACGATCCCTCT	ref_5486_reverse	27	52	46	45	53	47	69	27	46	28
GTTGGCGCTTGACGTA	ref_5486_reverse	131	145	177	145	127	138	111	139	141	126
TTTCATATGAAGCCAA	ref_5486_reverse	96	89	106	112	87	106	98	83	99	68
AGTGTTGGCTATTAAA	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
TATTGGCCTCATTTGC	ref_5486_reverse	0	0	0	0	0	0	0	0	0	0
GTTAAAACACCCTATT	ref_1198_RC	31	8	42	30	13	43	12	24	14	30
GTGGCTTAGCACGTAG	ref_1198_RC	159	92	157	119	65	140	98	109	94	142
AAGAAGCAGCTGCACC	ref_1198_RC	533	231	603	461	206	480	250	468	262	489
TTTGTGTGTAACCGTG	ref_1198_RC	122	63	130	80	65	105	68	95	78	80
TGCATAGATGTACACG	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGTTTCGTAAGT	ref_1198_RC	88	44	104	76	39	85	29	67	40	76
ATGTATTATCCGCTCC	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
TCGGCAGTTTCTTCCG	ref_1198_RC	38	15	34	13	20	29	13	23	16	31
CTTAACCCTATACGGC	ref_1198_RC	216	84	239	201	89	187	112	182	123	171
GCGATCTTGTGAAGAT	ref_1198_RC	121	53	98	109	62	112	45	95	51	105
AACCCTCATCTATTTT	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
ACACTCGGCCCGCTCT	ref_1198_RC	10	12	10	11	13	10	9	12	8	12
GCCACAGACATTTAGC	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
ATGTATGTTCGAGTTT	ref_1198_RC	5	4	4	7	5	5	6	6	6	9
TAATGCCTTTCCCTTA	ref_1198_RC	121	44	149	104	47	141	62	91	67	110
CGGTTATGGCGTTATG	ref_1198_RC	492	269	550	427	270	430	245	460	261	418
CGTTCGATATCGCTAC	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
ATCCATTCGTGTGGGT	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
ACGATTATGCTAAGCT	ref_1198_RC	57	42	86	67	35	58	39	60	42	69
GCTTACGTATCGTGAA	ref_1198_RC	555	231	623	556	277	478	276	480	250	493
CGGCTCTATCGCTGAC	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
TGGTGGATTAAAGGCA	ref_1198_RC	175	75	179	156	47	159	67	134	76	151
AAGTTTCCGTATGCCC	ref_1198_RC	374	147	409	351	150	326	144	310	160	340
TCGCCATGTAGGTGGC	ref_1198_RC	55	30	54	51	30	48	30	45	30	41
ATGTTAGACCTGCGTC	ref_1198_RC	11	9	9	13	5	8	8	11	6	6
TCTCAATTGGATCAGG	ref_1198_RC	471	209	564	424	210	417	242	353	233	371
ATCATCACACGATCGT	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
GTGTCCCCTATCGTTC	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
TTGGTTAGGAATTTAG	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
TTCCGGTCCTGCTTTA	ref_1198_RC	241	86	271	205	86	200	109	189	97	206
TGTACTTTTATAATGG	ref_1198_RC	125	63	137	95	60	124	72	141	56	126
AGTTAAGTGATTTCGT	ref_1198_RC	4	0	3	3	1	3	0	1	0	0
CCAACGTTCACTGTGA	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
TATACTTGTCTTATCG	ref_1198_RC	500	179	589	444	220	457	190	430	221	432
TGTACTGTTGCGCATT	alt_1198_RC	74	68	79	88	57	70	54	79	59	67
CTGCTTAATGGAACAG	alt_1198_RC	258	237	325	246	232	226	270	222	302	226
CGATGTAACCCCATAA	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
CTGTAGGATTTGGAAG	ref_1198_RC	129	40	113	99	49	96	60	78	61	84
CCGTCTCTTGAGGCTT	ref_1198_RC	9	53	7	10	54	4	46	9	43	5
ATGGTACGCGAACATA	ref_1198_RC	9	3	4	6	2	7	4	6	2	10
TTTATGACATGCTTTA	ref_1198_RC	95	33	92	75	32	91	34	59	31	71
AGCAAGCGTTCATAGG	ref_1198_RC	175	98	234	171	85	175	99	166	87	194
AAATTCCTGTGTAGTA	ref_1198_RC	50	23	68	51	27	57	30	65	18	73
TTCATTTGCTAAGGAC	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
GCTTACAGTTTATAGC	ref_1198_RC	61	25	79	62	25	55	24	49	34	55
CTAACCTGGTTCTACC	ref_1198_RC	0	0	0	0	0	0	0	0	0	0
ACAAGTGTCAAAATGG	ref_1198_RC	1	4	9	5	5	8	4	4	4	7
TAGACTGCATATTGCG	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
CTACTGCGACACATAC	alt_110_reverse	4	13	3	7	4	4	2	3	4	3
TATGCATATGCGCCTA	alt_110_reverse	53	54	67	45	48	48	62	44	81	33
TGTACTCCTTGGGGGG	alt_110_reverse	13	16	14	6	6	8	16	6	27	13
TGTCGTCAGGTTAGTG	alt_110_reverse	14	13	7	19	16	14	26	17	15	8
TGTGAGGATTATACGT	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
TCTGAGGGCGCCCTCT	alt_110_reverse	14	18	12	13	25	10	20	8	27	16
GATTCGCGAGGCTGGT	alt_110_reverse	27	48	27	29	35	30	69	16	58	25
TCTTCTCAGTTCGCGG	alt_110_reverse	14	23	18	18	30	16	21	20	19	12
CGCCTCCGTTGTTTAC	alt_110_reverse	7	24	8	7	24	3	31	5	35	6
GAGAAGTCTGATCTCT	alt_110_reverse	27	47	48	41	46	33	67	36	46	39
AGGTTTTTACATCCAC	alt_110_reverse	39	54	53	57	54	44	64	47	55	47
GGCCATCACCGGTTCT	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTGTACTTTTCCA	alt_110_reverse	6	8	10	5	11	11	15	3	12	2
TAGTGGTCGGCTAATG	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
TAACATTCACTTCAGG	alt_110_reverse	24	34	23	24	32	22	25	37	27	20
ACAGTAAGTGTTTTAC	alt_110_reverse	28	35	33	33	52	27	49	29	46	28
GATTATCAGTTGTTAG	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
AACCTACCTCGGTTGC	alt_110_reverse	27	62	31	36	47	28	52	33	65	23
ATTACATATTTGCGTC	alt_110_reverse	38	37	40	32	46	37	44	36	50	24
ATGTCGTCTCGGTATA	alt_110_reverse	0	1	4	6	2	1	5	1	4	1
GTCTTTTCTTAACTGA	alt_110_reverse	6	14	5	4	9	3	8	6	10	6
TGTTTGGCGGTCCTCT	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
AGATGAACATGGGGCT	alt_110_reverse	2	6	2	1	2	4	1	3	2	1
TGGGCTGTATTGCGTA	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTTTAATAGGAA	alt_110_reverse	37	47	50	43	55	37	43	35	52	44
CACTGAGTCCAGCTTC	alt_110_reverse	37	23	35	24	37	30	34	32	31	24
TGGAAATCATCACGTC	alt_110_reverse	21	33	38	40	45	35	57	39	59	35
CGGGTTAATGTATTTT	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGATCTGATGGAT	alt_110_reverse	28	39	35	21	27	23	40	23	32	27
GCTAACAGTTATATAA	alt_110_reverse	4	16	9	7	16	7	19	7	14	6
TACCCATACTTCGACT	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
GTATTAATGGCGTTCA	alt_110_reverse	31	47	46	37	44	38	51	44	58	38
TATCGATAGCGCGAGG	alt_110_reverse	82	121	156	108	131	109	124	89	138	91
AGTGTAACTTGCTGCA	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATACAGCTTTTA	alt_110_reverse	81	101	78	77	83	82	140	47	140	88
ACCACATTGCCCCTGT	alt_110_reverse	10	15	13	17	11	16	18	18	10	17
AATTCTCGGTTTCCGT	alt_110_reverse	11	27	16	20	24	14	30	22	18	7
TCAATCCGTAGTTTAA	alt_110_reverse	64	69	41	48	73	55	76	26	77	47
CGGTCTCCTACGGTTA	alt_110_reverse	12	28	7	6	31	11	44	12	23	11
GCTTTTGCGTCTCTGC	alt_110_reverse	20	33	25	17	42	23	38	14	30	21
TGTTACTACGGTTTAC	alt_110_reverse	6	5	4	6	10	0	7	5	10	0
CGGGTCAAGACTTTCC	alt_110_reverse	5	11	10	7	7	5	2	7	10	2
TTCTAATGCCCATTAT	alt_110_reverse	21	18	16	21	26	31	26	17	23	15
CTTGTTGATATTGTGT	alt_110_reverse	27	20	23	18	17	17	15	19	24	17
GGGCCTGTCCTTGCAA	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
AGACCTACCTTCGTAG	alt_110_reverse	3	13	8	2	23	2	27	3	17	3
GTTACCTCCGATAAAA	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGTCGGTAGGTCT	alt_110_reverse	25	39	39	28	47	34	48	25	30	31
GTAAGGCAATCCTGTT	alt_110_reverse	18	13	18	26	16	17	19	18	18	21
TGAAATGCACACACAA	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTGTTCCGATCCG	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
CATAGCTCTACACCCT	alt_110_reverse	16	35	40	12	49	21	55	22	38	21
AGCTCGGTGTGCGTGG	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTGTCGTCAGTTC	alt_110_reverse	14	12	20	16	13	10	16	20	17	5
TGGGGCCGGGATTTAC	alt_110_reverse	51	75	58	63	59	54	84	51	84	43
ACTTTGCGAGGCAGGA	alt_110_reverse	19	29	30	15	25	25	23	29	41	19
AAACCCAGTACTATTA	alt_110_reverse	32	48	37	39	56	29	42	33	60	31
GCTCACGACCGGCGAG	alt_110_reverse	16	15	22	13	29	16	25	17	18	14
TTAGTGCGGTTTCCTA	alt_110_reverse	11	17	8	7	12	8	20	17	24	9
AGTCGAAAGTTTACTC	alt_110_reverse	4	2	0	3	0	1	3	2	7	2
CCACACCGAACCCAGC	alt_110_reverse	31	66	40	39	75	28	75	26	83	33
CATCCATAATCCTATC	alt_110_reverse	13	21	18	18	15	22	25	13	12	7
CTTAGTAATTTGTCTT	alt_110_reverse	4	12	8	4	9	3	10	11	13	1
GCACGTTAAGCTCCAG	alt_110_reverse	1	10	1	4	3	7	1	6	8	3
GACTAACGCGGAGCAG	alt_110_reverse	13	16	12	18	15	14	22	10	21	14
ACCGTGTATCTAGCTA	alt_110_reverse	9	9	9	9	7	7	4	9	13	3
TCCTGTATTCTTTCCT	alt_110_reverse	14	12	10	13	11	11	16	6	14	7
ACATTGACGGTTTTGC	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
CGTAACGTGTGTTTCT	alt_110_reverse	7	12	13	14	14	14	21	6	19	13
AGTAGTCATATGTTTT	alt_110_reverse	5	12	11	8	9	3	16	12	16	10
GAGCGTGCTTAGGCAA	alt_110_reverse	0	10	5	7	7	6	5	1	13	4
TGGGATTCTTGGTGGT	alt_110_reverse	32	41	32	18	46	28	50	31	39	31
AGTTTCAGCCAGCTTA	alt_110_reverse	13	18	18	11	8	14	14	13	22	7
GGAAGTCTTGTGCCTT	alt_110_reverse	0	8	2	4	2	3	10	2	7	6
TGGACCAGTTGTTCTT	alt_110_reverse	43	47	32	42	69	19	63	30	45	26
TTGGGTCCCATGCCCA	alt_110_reverse	54	71	62	52	84	40	73	50	79	50
TTCAGTCGGCCATGGT	alt_110_reverse	27	54	24	25	43	12	49	23	37	25
CAGCCCGGGTGCCTTC	alt_110_reverse	6	12	9	9	8	9	14	11	18	5
CGATACTCCGTTTACG	alt_110_reverse	6	7	2	6	5	3	11	4	10	3
TCGTTTCGTCATCCTC	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
CCAAGAGCTTCGCTTG	alt_110_reverse	4	17	11	4	20	5	25	4	16	8
TTTTTGATTCTGATAA	alt_110_reverse	6	6	5	3	4	6	4	5	4	7
GGAGCATTATGTAAGT	alt_110_reverse	29	25	13	12	17	14	21	14	24	16
CTACTCATGGACCGGT	alt_110_reverse	4	11	5	7	10	5	12	4	5	11
CGAAAGAGATACGCGG	alt_110_reverse	96	105	106	76	110	92	136	84	138	64
TCCCCTCCGTTCCCAT	alt_110_reverse	0	0	0	0	0	0	0	0	0	0
ACAAAGTATCTGCATT	alt_110_reverse	4	15	5	3	14	3	7	4	6	4
AGTTGATTTACGTTTC	alt_110_reverse	14	18	16	17	35	10	15	14	23	7
TCGACCGCAAGTGTGA	alt_4911_missing	19	41	24	22	30	16	34	14	36	25
CGAGGGTGATTATTAA	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
GCTGATTTCTGTGGAG	alt_4911_missing	4	8	2	3	3	7	8	5	12	2
GATCTCATTTGTCTAA	alt_4911_missing	21	45	21	7	44	31	57	17	44	21
CGCGTTCGGATTTTAA	alt_4911_missing	32	56	33	21	20	25	36	19	41	23
ATATTAGAACGAGCGA	alt_4911_missing	37	99	46	60	82	41	80	37	84	38
TTTGCGCGCGGTTCTC	alt_4911_missing	1	2	3	3	9	3	3	1	3	2
GACGTGTCGACGGGCC	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
AATTTATACCAAATGG	alt_4911_missing	11	12	8	6	17	10	16	7	15	7
TAGTTTTCGCGATGTT	alt_4911_missing	9	14	14	16	15	14	17	5	19	13
ACGTCTAGTTGGGCCG	alt_4911_missing	14	32	9	4	30	10	25	11	40	14
TAGAAATCTGCACAAC	alt_4911_missing	6	12	5	8	10	4	9	2	10	5
TGGTTAGTTAGCGTTG	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
CGGTTATTAGTTTTAA	alt_4911_missing	0	4	2	7	4	1	3	1	6	4
TTCTATCTACCGATCT	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
TCCACACAATGGACTC	alt_4911_missing	0	1	2	0	0	3	3	0	0	0
TTTACGGAGTTATGAT	alt_4911_missing	15	23	16	22	24	11	19	13	33	11
GCTAATGCGCATTTTG	alt_4911_missing	2	5	4	1	1	1	6	1	0	0
GACTCCTTTGACTGCA	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
AAGGTCGTCTAGTGTG	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
GAGTAGTATTTGTTTG	alt_4911_missing	23	38	18	22	44	26	67	25	56	21
CTCACAACTGATAAAT	alt_4911_missing	8	32	17	14	31	4	32	8	35	6
ACCAAATCATAATCAA	alt_4911_missing	4	15	3	7	19	6	16	6	13	1
AATGGGTATTCGCCAA	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
CTACTCTTTCTTGTCA	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
GGATCGGGTACTGAGC	alt_4911_missing	13	33	22	16	27	16	35	19	44	13
GAACACCAACGAGTGT	alt_4911_missing	14	20	15	12	10	11	20	3	15	9
AAGGGTTTCCCACCCG	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
CAAGGAAGTGACTGCC	alt_4911_missing	26	22	19	18	40	27	51	26	51	16
CGGGATCTGAGGGATA	alt_4911_missing	2	1	0	0	0	0	3	0	0	0
ATGGAGATGAACTAAA	alt_4911_missing	22	40	25	24	28	24	52	12	41	15
AGCCACTCGTCGAACA	alt_4911_missing	0	0	0	0	0	0	1	0	5	0
GCGCTCTGAGCCGCGG	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
TGCCATTCCAATTGTG	alt_4911_missing	0	6	7	7	3	2	5	4	0	4
CACCAGTGCAGCTATC	alt_4911_missing	0	5	1	1	0	1	4	1	1	1
CTCCCCCCAGTCCTAG	alt_4911_missing	3	11	0	0	8	1	3	0	8	1
CTGGGACAGGGTCACC	alt_4911_missing	6	3	3	6	14	3	7	3	10	3
CACTTGCATTACTGCA	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
GGACCTCAATATTCGG	alt_4911_missing	4	12	10	5	13	5	14	1	6	3
GTTCTTTTCGTTAGAC	alt_4911_missing	1	3	1	1	4	0	3	3	3	1
ACAGCGATCTAGGTTA	alt_4911_missing	2	12	7	7	9	5	13	5	5	7
TCTGCAATGTTATAGT	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
ATTAGGTCGCCAGCAT	alt_4911_missing	25	18	9	17	28	9	29	9	28	13
TTAGGACGTATATTAG	alt_4911_missing	8	27	7	13	26	8	31	20	43	12
TTTAGGGCCTGATCGG	ref_4911_missing	2	0	0	0	0	0	0	0	1	0
CGGGGGGCAGCCTTGG	alt_4911_missing	3	4	5	0	1	2	6	3	4	1
GATTCTCTGATGTTGA	alt_4911_missing	2	10	2	5	5	5	4	9	7	4
GCAATTGGTCCTGCCT	alt_4911_missing	8	17	12	5	6	3	13	2	20	6
AACTGAGTTCTAATGC	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
GAGGATCGGACTGCGG	alt_4911_missing	0	3	1	0	2	1	3	0	2	1
CCGGACCGATGAAGAA	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
CGGTGAATTGCCACTC	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
TTCTCCTATACCAATG	alt_4911_missing	5	8	3	3	11	7	8	3	9	5
GTGTGTTGCATGCCGA	alt_4911_missing	1	2	2	3	3	0	3	1	0	1
TGTCCATTTCGCTGTT	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
CTTCTATGGGTGCAAG	alt_4911_missing	0	8	2	4	7	1	5	3	9	1
GCTGCTTTCACCTCTC	alt_4911_missing	14	25	12	7	18	9	22	11	21	8
GGGGCCATGGATCCGT	alt_4911_missing	10	11	8	5	15	9	8	10	17	12
TGCCGTTTCTTCAGAC	alt_4911_missing	8	8	10	2	10	5	22	7	14	4
CTAGGTTGATTCTATA	alt_4911_missing	4	10	1	0	1	2	3	2	5	0
CGTGATACCCCGCATG	alt_4911_missing	3	3	1	0	1	0	6	2	5	0
CTGTTCTGCGATGTGT	alt_4911_missing	14	29	8	4	28	10	24	11	27	7
AACAAGGTCCGCCGAA	alt_4911_missing	3	7	3	3	7	4	8	5	6	5
GCGAAACGAATTGACT	alt_4911_missing	23	65	49	30	78	22	66	38	68	34
GTCCTAGTGTTGTTCA	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
CTATGGCGGGCTTAGT	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
TTTCATGTATCCTCAA	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
GGGCGATTTGTATGGC	alt_4911_missing	5	10	5	3	13	4	13	5	27	9
GTCCATTGTTCCGCAC	alt_4911_missing	4	11	9	4	12	3	10	4	10	5
CTTCCAGTTAGTTGCA	alt_4911_missing	12	19	7	11	12	3	19	6	23	8
AGAGCTTGGGTTACTT	alt_4911_missing	8	14	4	4	10	6	23	8	11	4
AATGGCAATGACAGTT	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
AACTCCATGCAACGTA	alt_4911_missing	2	14	7	0	27	1	16	2	17	3
CTCCGGCCCAACTTGG	alt_4911_missing	0	1	0	1	2	1	0	0	0	0
TCGAACTCTCCGGCGG	alt_4911_missing	0	0	1	0	0	1	3	1	0	0
TTTAGTTGGGCCCCCG	alt_4911_missing	12	21	19	11	28	12	17	11	30	14
CCAGTTTCTGGCCCTC	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
TCCCTGAGAGTACTTC	alt_4911_missing	16	21	14	13	25	21	19	7	25	11
TTCTCCTACCAGCTTA	alt_4911_missing	14	53	28	17	65	20	57	13	49	16
TTACTCTCCGCCTATT	alt_4911_missing	0	0	0	0	0	0	0	0	0	0
GTTTGAGAGACCTGGC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GCCCATACAGGGCGTG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GTCGACTTTCACCATT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTACTTTTGAATC	ref_1762_upstream	63	35	90	67	32	53	43	53	52	54
TAAATTATCGTTGCCG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TTACCTTTGCGCTATA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTTAGATCGCAG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGCATTTTATCCTGTC	ref_1762_upstream	65	59	87	91	47	60	34	63	46	63
ACCAAGCCCTGGTTGT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GCATAAGACTTATCTT	ref_1762_upstream	137	78	133	133	78	122	78	124	81	115
TTAATAAGCTGAGTAG	ref_1762_upstream	11	5	17	9	3	16	9	4	9	7
AGGACGTTCGCCTGGC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCATCTCCCTGAC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGCGTTCCCCGAA	ref_1762_upstream	5	4	7	6	4	9	11	6	3	1
TAGTATGGTCAAGAGT	ref_1762_upstream	58	26	76	54	36	45	46	38	37	41
CTTTAGTACTAGGTTG	ref_1762_upstream	144	108	167	140	106	130	92	161	90	128
CTTGTACTCATGTACA	ref_1762_upstream	21	11	25	20	16	24	19	32	25	14
TGTTGTGCGACCTGTT	ref_1762_upstream	61	56	78	61	51	47	68	50	62	43
TGGGGTCGCTTTATAT	ref_1762_upstream	41	28	65	55	31	55	45	44	22	43
CTCCACACTAGATTTT	ref_1762_upstream	118	76	146	121	74	121	83	117	81	104
GAAACCACTCCGTGCC	ref_1762_upstream	6	41	14	13	54	13	50	7	49	10
GAACGTAGGCCAAAGC	ref_1762_upstream	26	23	31	37	13	24	14	37	14	24
TACGTGAAATTCTATT	ref_1762_upstream	21	7	17	18	19	14	12	13	7	17
TGCGGCGGCCTCACCG	ref_1762_upstream	61	22	70	79	37	62	35	45	32	46
TCACCCGCAAGTACCT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
AAACAACATTTTATGG	ref_1762_upstream	27	14	28	21	11	17	12	26	17	14
AGACTACTAAGACTCG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TTGACTCACTGTTATA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCTCACATTTTGA	ref_1762_upstream	20	12	23	18	15	17	12	28	14	14
TTATTGTAACGGTCTT	ref_1762_upstream	23	11	12	16	7	17	12	15	15	15
CGACGAGGTTGGTTGT	ref_1762_upstream	3	5	10	8	7	8	1	3	8	4
TTAGGTCGCTCGGCAT	ref_1762_upstream	16	34	25	13	24	12	26	9	26	13
ATTAAGGCCAAGTCTG	ref_1762_upstream	43	37	46	36	20	42	19	26	32	39
AATTTCGCCTCATACC	ref_1762_upstream	19	9	27	16	16	15	17	26	15	24
GAAAGTCCGTTGGGGT	ref_1762_upstream	158	97	164	163	91	128	100	145	87	154
ACTTTAGTTAGTGGAA	ref_1762_upstream	89	63	138	119	59	112	80	100	82	128
CGTTCCGCTACTCATA	ref_1762_upstream	13	10	19	17	8	14	21	23	16	21
AAACCTAACGCCAGTG	ref_1762_upstream	17	13	44	24	22	39	27	30	10	28
CAAATATATCTTACTG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCCTTGTGGTTGC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CACTCTAAACTGTTAA	ref_1762_upstream	95	63	127	127	77	92	68	87	92	93
TCCCAAGATTTTCTCA	ref_1762_upstream	26	24	43	27	17	19	18	29	23	26
CTGTCAATCTTTCTCG	ref_1762_upstream	119	67	125	108	93	93	73	106	74	91
TATGAGCAGTAGCAAG	ref_1762_upstream	1	2	1	1	0	2	2	1	2	0
GAGCCGAAGGCGAGAT	ref_1762_upstream	51	26	67	70	27	61	20	58	39	54
CCATAGATTATTTAGC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTTAAGCGTCGTA	ref_1762_upstream	134	83	168	150	81	113	65	148	74	110
CGAGTCAGGCACGATC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GTTAAGGCTGCTTCAG	ref_1762_upstream	100	49	126	78	51	85	42	93	53	76
CGCCGCCAGTTGAATC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTTGTCCGAAGG	ref_1762_upstream	55	24	62	53	34	39	32	36	17	41
CGATTAGTCCACGGGC	ref_1762_upstream	29	6	25	16	7	23	12	19	24	15
TACTTCCCTCTATTCG	ref_1762_upstream	17	42	19	11	35	6	41	8	40	17
TTTATGTGGGCGAACT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CCTGTCTCAGTGTTGG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TAAATAGTCCGCGCCC	ref_1762_upstream	18	14	17	22	7	17	12	12	10	18
CTATGCATCGCTAATC	ref_1762_upstream	46	30	72	55	31	65	36	45	30	49
TACTAAAGTTTTTTTT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
AGCGACATCCCTCATG	ref_1762_upstream	44	34	67	62	38	59	25	56	30	59
TTATTCATTGGCAAGA	ref_1762_upstream	418	279	507	442	270	410	294	407	286	413
CTGTGTTCAATCCTCA	ref_1762_upstream	10	11	18	13	17	13	9	13	12	12
GGAGTGTGCACGTGCG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGCGGATGGCATT	ref_1762_upstream	63	63	91	84	62	76	64	76	40	61
CCGCGGTTGCAGTCTC	ref_1762_upstream	27	16	35	31	20	33	19	27	27	30
AAGGATACCCCGGACT	ref_1762_upstream	3	0	1	0	6	4	4	0	0	5
GTCATTTGCAAAATAC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTAAAACACGAGG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCCGATGGGTGCG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
AACGAGATGTATTAAT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GTGCAGGCGAATATAG	ref_1762_upstream	5	4	8	7	1	1	3	8	3	3
AGGGATTAGCCAATCA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
AATATGGCGTTACTCG	ref_1762_upstream	124	86	155	151	77	147	74	117	93	94
TGCTCTCGTTGCAATA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTTGCGGTAACGT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGCTCCTAAGTCG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GGCACTCAGTCTCCGT	ref_1762_upstream	126	78	164	125	60	103	86	108	82	101
TAACCGTTGGAGCCCC	ref_1762_upstream	12	8	13	14	12	8	16	13	23	7
TTACATATTTTTTTAG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGATCCAGAGGGATCC	ref_1762_upstream	34	37	57	48	38	36	42	42	37	32
ATACCGGTTCGTGCCT	ref_1762_upstream	24	38	25	21	50	21	27	46	41	24
ATAGGCATGGAGACGG	ref_1762_upstream	0	0	1	0	0	1	0	2	0	1
TTGCACGCTCTACGAG	ref_1762_upstream	57	23	59	67	42	58	34	64	35	63
TTCAGTTGGCCATATC	ref_1762_upstream	23	12	30	33	12	28	14	25	23	34
CTTTCATATACCTACT	ref_1762_upstream	105	84	139	121	82	85	55	100	86	87
TATCACCTCTAGAACA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GACTTTCTTATCGTTT	ref_1762_upstream	18	7	11	22	7	12	9	28	11	19
TGGTTCACCTGCTAAC	ref_1762_upstream	72	40	65	56	48	63	45	71	69	63
AGATACTGTGTAGACT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TATGCGTTATCGGCGT	ref_1762_upstream	23	19	25	24	13	20	15	29	14	23
GGCGCTTGTGTCTTAA	ref_1762_upstream	0	0	0	3	0	3	2	1	0	1
GTGCTGGCCATGAGGA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CTATATTACCTTGTTT	ref_1762_upstream	36	13	23	22	22	24	22	33	19	20
GGACCTTTCCTTCAGG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTTCTATGATTAA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GCTCATCTTTGTTCCC	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTTGGCCTTGTCT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGACGGACCTCCG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGGCAACTTCGCC	ref_1762_upstream	79	69	107	75	82	71	50	98	70	92
CGCCGAGGAAGAACTG	ref_1762_upstream	55	47	49	36	31	30	33	47	35	38
TAAGCCAAAGAGACCT	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
AAGATCTCAAGCCGGG	ref_1762_upstream	29	18	31	35	22	36	15	28	12	29
ATGTGTCATTGTATGT	ref_1762_upstream	60	37	79	60	36	65	35	67	25	59
GCTCACGAAGTCGTGC	ref_1762_upstream	15	16	21	30	20	24	25	22	19	26
TATGTCCCATCTTTTA	ref_1762_upstream	9	14	25	12	8	11	4	12	13	21
ATCTGCTGTCTCCGTG	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
GATTCTTGCCACAATG	ref_1762_upstream	27	16	35	43	26	31	22	34	15	40
TATCGTTTCACGAATC	ref_1762_upstream	31	16	19	30	18	26	7	21	13	21
CTGCGTCCTATGGTTA	ref_1762_upstream	44	27	31	45	15	29	15	32	18	25
TCCCGGTTACATTTGC	ref_1762_upstream	22	21	22	15	19	9	14	15	9	13
TTGGTGTGATTCTTAA	ref_1762_upstream	0	0	0	0	0	0	0	0	0	0
CCAATATTGATTTGTC	ref_1762_upstream	83	50	106	85	55	73	47	77	44	53
TGGCAGTGCACGGATA	ref_1762_upstream	92	52	95	98	56	80	47	75	52	81
GGATTCAGGCAGTCCA	alt_3594_fdr	53	48	51	28	45	37	39	48	53	37
CCCACTGCTGAAATCG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATCTACGGCAAGGCGT	alt_3594_fdr	2	7	5	8	8	6	9	3	4	4
ACGTCTGATCCTCGGC	alt_3594_fdr	38	29	38	32	26	32	28	20	23	27
GTCGGGTACACACTTC	alt_3594_fdr	173	168	201	154	167	178	170	143	188	158
GGTTAAACCATCGCTG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CATAAGTCACTTATCC	alt_3594_fdr	7	8	13	6	8	7	9	11	9	8
GTGTCCTCTCGGACTG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAGGGTTTGGCTA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGATGCTAATCAA	alt_3594_fdr	101	95	130	97	102	96	100	107	116	88
CTTTCGGTGGTTCTGA	alt_3594_fdr	252	199	276	215	214	206	219	166	235	192
CCGTTGAAGATAATCT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTGCTTTCGCTTG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
TCAAACTTGTAAGACC	alt_3594_fdr	85	103	101	87	92	88	101	92	117	88
TAGTTCTTTATCTCAC	alt_3594_fdr	46	37	42	24	29	32	29	20	40	37
ACCTTGAACATCTAGT	alt_3594_fdr	14	9	14	19	15	7	12	9	14	11
TAGTACCTCGCGTCCC	alt_3594_fdr	14	23	28	11	14	11	18	11	19	16
CCTTCAGCCCATTCGC	alt_3594_fdr	56	52	83	45	38	50	59	55	65	55
TGGTTCTCCCATTGCA	alt_3594_fdr	24	28	27	24	26	28	26	24	34	33
TATGCCCGGGTTTCTT	alt_3594_fdr	66	49	68	53	62	51	56	41	49	52
CGTACAAGAGGACGTT	alt_3594_fdr	19	10	26	12	14	11	23	13	21	12
GTAAGGGGCACGGATT	alt_3594_fdr	15	21	24	27	18	25	20	19	34	16
CCCTAAGGAAGGGTCG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTCATAGAACTTT	alt_3594_fdr	21	11	19	17	16	14	24	12	14	13
CGAATACGGCCTGCTT	alt_3594_fdr	6	7	8	6	6	11	8	6	7	11
TAATGCAGGTACGTAC	alt_3594_fdr	17	15	29	23	14	16	23	12	26	24
TCCCCAGATGGCTGAA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
TGACGCGGCATTCTCT	alt_3594_fdr	103	72	107	75	73	87	85	82	76	60
CCCGGTCACTGCGTGA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
GATCTTAACGCACACG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
TGTAACCCATCGTAGC	alt_3594_fdr	9	15	22	11	14	15	20	19	27	11
ACAGTTGACTCTGCCC	alt_3594_fdr	4	5	2	2	2	4	4	1	7	3
CTGGATGTGACTTCCG	alt_3594_fdr	90	78	123	73	95	70	76	79	89	73
GCCTTAACCAGCCCGC	alt_3594_fdr	14	10	16	8	9	8	9	15	9	5
TTACCGATGAAGATTT	alt_3594_fdr	44	34	43	22	47	31	52	17	45	37
TGTATTTGCCTGTTGC	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTCCCCGCAGTTT	alt_3594_fdr	3	10	5	4	16	5	17	4	11	6
GTTCTTAGTAGACAAG	alt_3594_fdr	18	20	15	21	22	15	13	15	12	12
AGCTATCCACTATGCA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTATGTTAGGTGT	alt_3594_fdr	34	52	39	37	30	30	45	30	46	21
GATGGAATGCCGACGT	alt_3594_fdr	18	21	41	19	26	29	32	21	22	29
CTAAATTATAGTTCGT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTTAGTTAGTATC	alt_3594_fdr	54	71	85	47	98	61	92	47	91	53
GGTTCATTAAGTTCGT	alt_3594_fdr	123	124	168	112	153	113	155	118	141	117
TGTCATAGTAATTGAT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CAAGCTTCCCCGGTGG	alt_3594_fdr	0	5	0	1	3	0	5	2	5	0
GAGGCTAAGCTGAGCC	alt_3594_fdr	113	125	140	75	122	97	116	86	100	79
TTATTTGGGATGGTCC	alt_3594_fdr	16	21	17	15	21	11	18	19	16	12
TCTATTGGAGATCCTA	alt_3594_fdr	15	16	25	14	20	13	21	17	12	12
ACGGTGTCGTTCAGTG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATGGACGTGATTCGAC	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
GTGCACAGCCACGGCC	alt_3594_fdr	373	422	422	312	458	331	452	355	469	343
TCAATCGTGAATTCTC	alt_3594_fdr	20	14	17	12	17	7	12	10	22	12
GTTGTCGATTAGATCT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATTACCTTAGATTACT	alt_3594_fdr	10	7	12	7	15	12	17	11	15	13
CCCCACATGCCCGGCT	alt_3594_fdr	27	18	26	16	22	13	28	25	20	28
CCCCGACCCTGTGTAT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
TGTAAAACGCCGCCAG	alt_3594_fdr	32	41	28	15	27	31	24	20	22	22
TCAGAACCCCTTAGGC	alt_3594_fdr	78	85	115	90	103	108	76	115	118	89
TTACCGATTCTGCTAA	alt_3594_fdr	55	80	85	56	88	60	83	53	96	51
CCTAATTTCCGTTCTT	alt_3594_fdr	136	98	155	138	129	124	122	109	107	115
CTGGCACAGTATTGCC	alt_3594_fdr	22	17	14	15	26	12	16	9	20	8
CTTGATTACGTACGGG	alt_3594_fdr	72	69	71	50	61	60	61	43	76	51
GGATAGCTGAATCCCG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGTTACAATACCA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTAAGACTTAGGT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGATTTGGGTTGA	alt_3594_fdr	24	15	37	29	26	18	26	23	22	15
AGGGAACCTGGGCTAT	alt_3594_fdr	8	4	7	1	2	8	9	4	2	3
CTAGGCATGAACCGTA	alt_3594_fdr	19	36	28	24	26	25	43	20	39	12
TATCGGTCATAGTAGA	alt_3594_fdr	60	65	87	74	80	59	79	69	74	51
CAAGTCCTAAACTCTT	alt_3594_fdr	68	65	86	60	89	73	61	63	75	68
ATGTCTAGAACAGTTG	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CGTCCTGCCGTACACC	alt_3594_fdr	46	41	50	30	63	49	44	44	64	45
TGCCATTGCACGTGCA	alt_3594_fdr	9	8	10	3	17	9	10	6	16	8
GGTCAATGGCCGTTAG	alt_3594_fdr	14	13	9	13	10	6	5	8	12	8
ATCGGGGTTAATACTC	alt_3594_fdr	11	5	10	3	7	5	6	5	6	6
TCTTCTACTTAGTTGA	alt_3594_fdr	65	59	68	43	59	51	75	62	66	52
CGGGAAGGTGTACGAG	alt_3594_fdr	58	67	68	44	53	50	55	56	74	49
AACTTGTATAGGATGC	alt_3594_fdr	6	5	7	4	3	3	9	8	3	5
GGATATACTCCTGACA	alt_3594_fdr	25	33	33	30	28	26	27	20	32	26
GTATATTTTTTTCCAA	alt_3594_fdr	76	69	73	58	47	53	70	54	52	46
CCCTTCAGTTGCACGC	alt_3594_fdr	24	27	42	15	22	31	36	21	28	31
AGGGCAACAGGGACGT	alt_3594_fdr	14	8	10	12	9	11	7	16	15	7
GTTTTGTACTGACTGG	alt_3594_fdr	53	53	63	36	54	31	52	43	54	49
TTTTAGCGGACCGTAG	alt_3594_fdr	104	116	113	87	80	106	102	83	101	103
AATGCCCGATCGTTGA	alt_3594_fdr	70	91	104	81	80	64	82	52	80	75
ATTAGGATCTGACCTT	alt_3594_fdr	30	26	26	20	35	19	34	28	32	31
GCGGCTTGCTTTCGCT	alt_3594_fdr	9	10	8	8	11	15	5	9	11	9
TGAACCTTTGTGGAGC	alt_3594_fdr	16	7	10	8	16	7	7	6	5	4
CGGATGGGAGGTACAG	alt_3594_fdr	26	28	49	12	31	39	25	34	16	16
CTGCCCATTACGGTTT	alt_3594_fdr	37	44	32	36	48	37	43	40	73	22
ATGCTAGTAATTCGTC	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCGCCTTCTCCG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCCAGTTCACCCT	alt_3594_fdr	53	71	94	68	66	64	67	68	91	66
TTACTTTGGACTGCCG	alt_3594_fdr	57	45	68	50	50	55	55	37	61	47
TTCGTAGCTAATTCCA	alt_3594_fdr	17	14	40	20	19	20	17	21	20	25
CGAAATTACAAATCCT	alt_3594_fdr	10	1	9	4	8	3	8	3	5	12
CAATCACAGCATCCAT	alt_3594_fdr	17	14	16	12	10	8	6	11	11	16
CAGGACTTCTTCCCAA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATTATGGTGCTT	alt_3594_fdr	26	19	50	29	33	35	34	24	33	25
CATAAATGATGGGCTG	alt_3594_fdr	41	71	54	32	62	33	91	32	76	33
GATTACAAGACCATAG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAGTTGATTAGTA	alt_3594_fdr	5	7	7	0	5	2	3	3	5	5
CCACTGTGTAAATAAC	alt_3594_fdr	31	26	26	22	28	24	34	21	31	21
CATCTTATGACGTATA	alt_3594_fdr	96	88	108	95	96	86	75	65	90	80
AAGCCAGCATAGAGCC	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ACTACTTGGTACATAT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTGTCACGGGCTA	alt_3594_fdr	21	17	32	15	20	25	27	25	21	23
ATTACCTTAGATTACA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGAATTTCTCGTG	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTGCCTGCAATTA	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
TTACTACATCGACTCT	alt_3594_fdr	0	0	0	0	0	0	0	0	0	0
ACACAATCTTAAAAGT	alt_3594_fdr	53	71	67	35	55	48	78	53	80	53
TTATTCGATTTTCCAG	alt_6021_new	26	23	30	15	10	18	22	15	26	10
TCGGTCCGGTACGGAT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
ATTTGCCCCGCGTTGT	alt_6021_new	40	32	38	43	26	31	32	46	41	34
CGCACAACGTACCTCG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
GCCTTTTGGTCAGATC	alt_6021_new	1	5	11	5	1	2	3	2	1	4
GTTCCACGCGCGCACG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TTGTCAAAGCTGTTGC	alt_6021_new	104	69	112	113	108	100	111	90	104	96
GACTCGGCATTCGCGG	alt_6021_new	15	21	15	14	18	18	23	13	19	11
AGTGGGTCTGCATTGG	alt_6021_new	31	29	55	46	45	28	27	26	29	29
TTCGTGCGGGCGATTG	alt_6021_new	30	20	27	17	27	25	23	14	31	20
GTCATATTGCATTCGT	alt_6021_new	172	194	223	144	195	172	220	153	203	163
ACAACGTAGTCGGATG	alt_6021_new	113	88	137	112	75	98	102	122	83	95
TACGGTTTAAGAAGAG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
AGTTCTTTGCTTAACG	alt_6021_new	16	18	16	10	27	21	21	8	11	12
CGTGAGGCTAGTAGCC	alt_6021_new	5	2	13	7	4	5	8	5	6	7
TTGCGCGTATTGTCGT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
GCACTATACGAGTATA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
ATTAGTCGCCAGATGC	alt_6021_new	6	7	2	4	5	4	4	1	5	3
TAGTTGGGCCGATTTC	alt_6021_new	3	6	6	3	4	9	2	4	1	6
ATTCCGTACACGTTAT	alt_6021_new	82	57	74	65	73	59	71	70	73	56
GCACAAGAGCAAAAAT	ref_6021_new	33	37	30	23	41	31	44	33	30	27
AGCCACTGGCCCTCGC	alt_6021_new	4	26	4	6	18	1	21	3	18	5
GCTCATTTCGGGGTGT	alt_6021_new	0	0	0	0	0	0	0	3	1	0
AGCATTTCTCCATTGG	alt_6021_new	355	351	409	330	343	292	319	309	394	298
TGTGGAACAGCATTAA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
AGTTGTTTTACTGCGT	ref_6021_new	51	64	57	46	52	50	58	43	74	35
CCCGTACGCCTGTGCT	alt_6021_new	4	24	3	4	15	3	22	3	13	0
AATGACGAACTAGGTG	alt_6021_new	70	102	102	92	81	101	82	81	68	68
ATTTACCCCGCGTTGT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TATGCATTCGCCTATT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
ATGCATTCCAACAAAG	alt_6021_new	38	45	51	50	40	46	51	26	32	29
GACTAGGTGTCTTCGG	alt_6021_new	27	39	45	28	34	45	48	38	38	29
GGTCAGCAAGTTTTTT	alt_6021_new	11	12	12	17	12	15	17	22	12	12
TAGGTACTCACCGGTT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
GAGCGAAAGATGCACG	alt_6021_new	83	83	77	75	67	76	78	65	78	57
TTAACGTTCTTTCGGT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TTCATCCTTTTAAGAG	alt_6021_new	31	21	23	20	20	17	15	12	20	15
CTATATCCGCGTTGTC	alt_6021_new	50	42	57	43	41	57	59	54	37	41
CACACAGATCAGCTCT	alt_6021_new	44	45	54	50	42	49	48	24	53	52
TTGGCGGCGGTTATCC	alt_6021_new	10	20	20	18	15	24	17	17	19	16
TAGTTTGAAATGTCTC	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CCCGATAATCTTGGAA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TCGGATGAGGCGCCTT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
GAGGCTTTGCGTGGCA	alt_6021_new	9	14	12	13	11	9	19	5	19	15
GTGAACCCTAAGCCTG	alt_6021_new	26	26	26	47	41	23	35	19	26	29
GGCCACTATCCTATTT	alt_6021_new	106	141	139	154	132	117	136	91	136	126
TGGATTCCCACCCGCA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CTCAGCTCATCACTGA	alt_6021_new	18	14	10	15	15	7	20	11	16	14
GGTAGAAACATTGATG	alt_6021_new	10	10	7	17	13	9	5	12	11	6
CACTGAATCTTGACAC	alt_6021_new	23	53	31	23	49	14	45	18	41	17
ACACGCCGACTAGGAC	alt_6021_new	16	9	22	9	22	20	16	8	19	9
GTTGCATCTCGTCTAT	alt_6021_new	1	0	0	1	0	0	0	1	4	1
GTATAGACGGTTCTGC	alt_6021_new	12	11	9	15	19	10	5	12	5	9
TTCTGTAACGGTTTGA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
AGACCTCCATACTGGC	alt_6021_new	14	41	10	16	25	9	23	10	29	5
ATTCACGTCTTCGTTT	alt_6021_new	21	22	30	30	25	35	21	26	29	20
TCCAGCGCGCCCCCTC	alt_6021_new	0	0	0	0	0	0	0	0	0	0
GCTCCAAGTAGACTGG	alt_6021_new	10	8	10	15	5	5	11	10	12	3
ATTGTTGCTTTGGCGT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
AATCCCTCAGTACAGG	alt_6021_new	408	409	515	412	424	416	464	375	497	366
TAAGTCTACATGTTGT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TGCAGAAACAGAAACG	alt_6021_new	8	4	3	4	3	3	0	7	7	4
AGTCCTATGGAAACGT	alt_6021_new	14	11	12	14	18	13	15	11	14	7
TATACTCCCCACGTAG	alt_6021_new	8	44	7	6	43	2	43	3	45	0
TCAGCAATCCTCAATG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
ATATGGGAACGCTACA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TGCCAGGGTGCGTCTG	alt_6021_new	117	83	146	128	107	109	144	109	127	131
TTAGGTGTTTGCCTAC	alt_6021_new	7	6	9	7	5	13	10	13	4	6
ATGGTTTACATAGGGA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CCCACCTCGTTTGCAC	alt_6021_new	0	1	0	0	5	0	0	0	1	0
ATGCCAATTCCTTAAT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
AGTGTGGGAACACACC	alt_6021_new	0	0	0	0	0	0	0	0	0	0
AAGGTTGCTTGTTGCC	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TTTCCAGGCGTATAAT	alt_6021_new	40	24	38	34	28	35	55	21	49	31
TCTAACTATTATTCTA	alt_6021_new	12	5	12	11	8	16	9	10	11	10
ATCAATAGGCATGTTC	alt_6021_new	168	144	201	154	188	146	174	170	171	149
ATGTCTATCATTCTCC	alt_6021_new	57	41	60	62	55	52	53	48	68	68
ACTCCATGCCGCCCTG	alt_6021_new	42	49	46	41	48	42	39	45	49	34
AGTTAATCAAACGTGG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TTGGACTCAATAAGTT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CATTCTTAGTAGAGAG	alt_6021_new	7	10	7	10	4	9	7	9	5	7
TCGAGCCAGTCGCGGC	alt_6021_new	28	29	32	32	38	29	32	25	26	29
AATCTGAAGGATCACT	alt_6021_new	28	32	39	22	29	21	34	17	13	23
AGAATCTGCTGCAGGG	alt_6021_new	9	16	17	15	17	11	18	24	21	11
TCGCATGGTGTACTTC	alt_6021_new	13	7	16	10	13	10	10	11	2	9
GCGCGATTTAGATTGT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
ACGGCCTAGAAGACTT	alt_6021_new	30	23	29	21	17	22	15	18	28	16
ATGGCGCCGGAGGAGA	alt_6021_new	99	66	123	130	60	98	83	109	91	96
ACCGCCTTATGTACAA	alt_6021_new	48	78	94	89	93	64	82	72	106	60
ATCGCCAATCTCCTGA	alt_6021_new	65	76	61	87	61	74	69	52	65	51
AAGCATATGCACGCCC	alt_6021_new	125	120	168	148	131	144	149	122	141	105
AGGCGCGTTGGCCAGG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
GACATCATTCTGTTCG	alt_6021_new	48	32	68	42	39	60	40	46	44	46
TCCAATTTATTCCTCA	alt_6021_new	11	8	18	14	5	6	15	11	12	6
CACACTGAGCTTCTTC	alt_6021_new	16	7	17	10	17	9	9	7	7	11
TTGGCTTTAATCATGG	alt_6021_new	115	121	133	105	136	110	111	99	101	94
CGTCTTATCGATACAA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TTGAAGAATAAGTGTT	alt_6021_new	2	3	0	1	1	0	2	2	0	0
TAACCATAATGTCGGT	alt_6021_new	17	11	17	15	22	25	22	23	23	34
ATGCTAACCTTCTTGA	alt_6021_new	23	31	27	22	26	21	35	25	30	30
GCTAGTGCCACAAGGT	alt_6021_new	18	17	26	18	17	20	17	7	26	14
AAGATACGGCAGACCC	alt_6021_new	43	37	55	59	43	37	52	43	25	48
GCGGGTATTTGTTTAT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
ATGTTCTTTCGCCATC	alt_6021_new	55	52	58	70	52	56	66	47	69	50
TAATGCTCCGGTTCAG	alt_6021_new	18	11	16	10	11	15	9	9	13	13
CGGTTAATTAAGACAT	alt_6021_new	3	1	1	3	2	4	3	3	5	5
TTCATCATCTGGCGAT	alt_6021_new	10	8	15	7	17	8	11	10	14	5
TGGACCGATAACCATG	alt_6021_new	8	7	1	9	8	5	13	8	4	5
GGCAATACATTAATGG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
TTAATGCTACTTGTTA	alt_6021_new	10	5	20	12	12	17	14	10	16	8
TGGTTAGAGGTACATG	alt_6021_new	191	208	244	180	207	149	204	170	205	156
CATAGGCTTGGCAGTA	alt_6021_new	32	41	39	41	41	30	43	41	58	21
TTCGTTAGTTGATGCC	alt_6021_new	46	58	66	48	41	49	54	37	40	40
TGCCTGCCTAAGAGCA	alt_6021_new	32	48	45	37	50	36	38	31	34	29
CCCTCCCCGTTTCCGA	alt_6021_new	9	13	12	9	8	11	10	5	6	1
TGCCGCATGGACTGTG	alt_6021_new	0	0	0	0	0	0	0	0	0	0
ATCGTCGTTATGAGTA	alt_6021_new	109	112	132	100	95	101	122	105	136	102
GTACTTAGGCTTTGTG	alt_6021_new	28	27	29	18	25	28	27	27	28	19
GATCACTCTTCTTTCA	alt_6021_new	32	14	35	22	24	22	22	17	22	18
ATTTTTTAGTACTCGA	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CCTTAGGCCCTACTGT	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CAGTGACAACTCGGTA	alt_6021_new	114	114	123	119	132	95	108	113	138	97
ATTTTTGAGATGAAAC	alt_6021_new	122	107	135	131	115	137	105	118	125	104
TCAAATTCTTGTCTCC	alt_6021_new	15	12	9	6	11	12	7	18	2	5
TTAAGGACTATGCCTT	alt_6021_new	26	41	33	33	39	32	30	36	43	15
TAAAAATTTGTGTTTT	alt_6021_new	74	75	141	80	72	69	53	88	88	77
TTACCTTTATTATTTC	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CTGCAGCTATAGGCGA	ref_6021_new	66	36	50	68	42	38	73	46	64	41
GTCTTGTTCTTCGTGC	alt_6021_new	0	0	0	0	0	0	0	0	0	0
CTGAACGGCTCAGGCT	alt_6021_new	25	20	20	26	15	12	26	25	22	18
GGGTGCACGCTGGCTG	alt_6021_new	24	14	13	18	11	11	12	12	13	15
ATATGGCGTTTAGAAG	alt_6021_new	47	70	67	54	46	45	68	73	55	52
AGATGAACCATTATGG	alt_6021_new	50	57	85	51	50	45	59	44	60	60
GGTGATTCTATGACTT	alt_292_upstream	110	42	143	135	50	128	54	100	51	137
CGAAAATCTTCGGGAG	alt_292_upstream	264	86	282	263	97	217	105	218	104	213
TACCCTGGGCTCACAA	alt_292_upstream	50	25	48	48	23	50	19	28	17	47
CATCCTAGACTGGGTT	alt_292_upstream	161	75	186	164	79	147	59	156	78	122
CAGAAATTTCGATTCA	alt_292_upstream	249	115	313	271	110	251	126	227	123	221
TTATGTCTAGAACAGT	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
CATTTCATCGCCTAGC	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGTAGTTACCTGA	alt_292_upstream	10	5	22	12	9	10	8	12	3	8
AGCCTACAAAGCAAAC	alt_292_upstream	91	45	109	90	41	79	57	75	45	73
GTTGTACCCGTAGTTG	alt_292_upstream	9	9	19	14	4	14	5	17	6	13
GGAGAACCGCTATCGC	alt_292_upstream	43	15	39	48	8	19	15	39	24	36
CAGATGTTCGAAGATG	alt_292_upstream	34	11	39	43	17	30	12	38	21	29
GTCTTTCCTGTCTATG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TATAGTGAGGAGCTTA	ref_292_upstream	168	48	177	153	38	119	57	135	37	124
TCCTTGAGTCGATCCT	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
GACATGAGGAACTCAC	alt_292_upstream	266	160	295	275	188	261	185	241	184	212
GTCCAATGATCGCTTG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
CATCACACCGCGGAAC	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGAGAGGTAGATG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGTGGGGTCTGCG	alt_292_upstream	17	19	16	20	11	15	9	25	4	19
CTGTGGCATTCTTACC	alt_292_upstream	139	102	183	169	91	144	109	148	113	140
GCTTGCCGGATGTCGC	alt_292_upstream	49	30	106	74	31	79	32	50	33	62
TTGCTCTCGTTCATCT	alt_292_upstream	114	45	123	108	43	109	54	97	47	85
AATTCCAGAGTTCGGT	ref_292_upstream	145	54	160	141	57	112	58	116	70	132
TTTCAGAAAGTTCGGG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TACGTTGGGCCACTCA	alt_292_upstream	29	17	38	47	19	33	13	42	17	39
CAACTCACCGTGGTTC	alt_292_upstream	79	59	105	85	52	78	47	79	46	76
CTCGGCTCTCTTTTAT	alt_292_upstream	301	134	358	329	100	332	130	255	155	247
TGAGTTGGATATTGTT	alt_292_upstream	22	13	24	27	6	23	8	27	12	21
GATTCTTTGTATTCCT	alt_292_upstream	143	45	196	156	77	151	67	150	73	152
CTGGGATAACCCCGTG	alt_292_upstream	29	10	25	30	22	36	13	23	16	20
CCATATAAGTATCCAG	ref_292_upstream	631	253	857	737	273	594	303	696	299	666
TAACTGGTTTTATATG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGAATGTATGGTA	alt_292_upstream	177	82	234	154	71	150	86	157	79	127
TTACTTTAGGTTATGG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCCTTCGTAGTTA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTATTATGTGCGA	alt_292_upstream	3	3	6	3	2	2	2	4	2	4
AGATTGCATTCGTCAC	alt_292_upstream	20	9	35	28	13	24	11	17	6	22
CACCCGATGTCGCTGT	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGATACGTAGACT	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTTCCTGGCAAG	alt_292_upstream	58	26	68	71	41	64	30	67	26	44
ATGTATTCATGCCAGC	alt_292_upstream	17	5	31	22	5	13	13	23	8	26
AAGTGTATTTGGACTT	alt_292_upstream	8	3	12	17	5	6	9	9	2	6
TCGCTCATAGGGCTGG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTGCTACTCGGTT	alt_292_upstream	39	22	41	43	15	28	11	25	14	32
TTATATTTGGCGCGAT	ref_292_upstream	45	18	54	52	26	46	17	45	21	38
GTAACGCTGGGGTTAA	ref_292_upstream	172	68	234	183	77	176	71	153	89	152
AGTCAAGTTCTATAAC	alt_292_upstream	89	30	91	90	43	52	47	85	48	76
TTCTTTGCGGCAGCCT	alt_292_upstream	38	10	28	28	19	22	13	21	9	17
GTATTGTTTGAATATC	alt_292_upstream	62	28	62	55	30	66	30	65	44	64
TCTGACGTAGAGAATC	alt_292_upstream	25	12	49	55	12	46	17	37	13	35
ATGACTCTCATCGAAG	alt_292_upstream	316	175	404	343	143	283	155	318	156	288
GCATCATCGGACCAGC	alt_292_upstream	15	12	18	20	7	19	15	23	3	13
TTACGGAGTTGTCTCG	alt_292_upstream	88	60	143	95	66	77	38	129	55	102
TGTGGTTCCCATCGAT	alt_292_upstream	214	80	274	251	79	211	105	184	74	167
ATACACCGCTTGAACG	alt_292_upstream	321	149	345	330	137	266	146	254	156	244
GATAGTTAGATCCCCA	alt_292_upstream	16	9	6	16	3	12	10	21	6	10
GTCCCCAGGGACCTCT	alt_292_upstream	68	30	88	86	23	45	25	64	26	70
TCGTACAGGCATGTAA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
GGTCAACGATTACAAT	alt_292_upstream	187	83	251	231	69	169	74	186	74	177
ATCTTGTGATCTTAAA	alt_292_upstream	66	19	51	34	26	45	18	55	22	40
GACTACAACTCAGGTA	alt_292_upstream	177	82	206	172	69	152	71	160	91	130
ATTTGATAATCGTCCT	alt_292_upstream	209	92	260	198	89	214	87	201	77	195
GAGACTTATATAGCAT	ref_292_upstream	52	19	78	50	14	39	19	52	18	52
GCCTATTTGCTCCTAT	alt_292_upstream	80	32	66	76	30	62	30	71	33	78
CCGGGGCTTATTTAAG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TCACTAAGGACCTAGG	alt_292_upstream	8	3	6	8	4	10	7	7	7	8
TTTAATCTATTGAACA	alt_292_upstream	102	51	100	97	50	93	27	94	61	83
TGCAATTTTCGCATAA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATGTTTGATCCT	alt_292_upstream	329	120	511	380	137	391	122	366	134	315
TCACCTTAGTCATGGC	alt_292_upstream	16	8	26	32	10	20	18	18	13	13
GGTACTCCGGTACGGC	alt_292_upstream	7	24	14	13	11	12	16	12	28	11
ATAGGTAGTCTATGGA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TACCCCGTACCCGCAA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTAAATAGGTAGTGAA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTACTAATCCGCG	alt_292_upstream	157	72	168	158	56	147	54	116	69	104
TTCTCGTTATATTCTC	alt_292_upstream	104	34	115	122	29	88	38	93	33	76
TCGGTGATTCTGAGTC	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTTGGTATGGTG	alt_292_upstream	13	5	29	21	8	21	5	17	6	13
CTTTGTCTGTTTACGG	alt_292_upstream	69	32	104	92	39	66	43	89	22	60
TCTCCTTTTTAACTTA	alt_292_upstream	346	133	406	336	136	328	147	304	129	271
TGGAACGCTCGTTTGG	alt_292_upstream	324	136	367	330	127	284	126	307	137	249
GGTTACGAAAGTCACG	alt_292_upstream	60	15	66	68	14	53	23	46	36	39
AAGGGGTTCGATGATC	alt_292_upstream	68	27	99	93	41	79	20	72	28	75
TGATGTGACAAAGCTA	alt_292_upstream	219	66	246	188	81	184	84	181	101	163
TTAGTAATTAGTCGGC	alt_292_upstream	289	143	382	342	123	324	145	303	136	277
ATTTTCCAGTCCCAAT	alt_292_upstream	72	37	80	88	27	66	28	74	35	61
GGGGAGCGTGCTAATT	alt_292_upstream	24	10	42	40	19	41	24	44	10	23
TGGCCCGTTTCCACGA	alt_292_upstream	86	54	85	106	42	90	41	103	60	76
GTCTGTTAGGTAAAGG	alt_292_upstream	80	37	65	65	20	62	21	71	33	56
ATACGCTGCTCATTCG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
CGTCAAGCTAAGGTCA	alt_292_upstream	328	157	375	373	145	314	152	308	158	318
CGTTGTATGTCACGCA	alt_292_upstream	88	27	125	123	29	95	33	99	40	88
TGATTAATTATTCTGC	alt_292_upstream	39	18	70	67	22	46	27	54	19	48
CTTGGCACGATATCTG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGGGAGTACGTG	alt_292_upstream	61	31	67	73	28	66	43	55	34	40
ACCCAACAGACAGGCG	alt_292_upstream	53	18	51	47	17	39	18	39	10	37
TTAACGTACGTATCTT	alt_292_upstream	33	22	41	35	12	40	14	32	18	25
CCTAGGTTCATTACTG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TTTGAACTTGGCCCCG	alt_292_upstream	16	6	17	18	6	17	5	18	10	15
GACGACAAGTGCCTTG	ref_292_upstream	407	121	553	457	107	394	133	391	147	390
ACAGTTGGCATCAGCG	alt_292_upstream	50	21	46	52	33	33	20	51	26	43
CTTGTGAGTTTTTCCG	alt_292_upstream	8	5	6	5	0	10	6	4	1	8
TACTTAAGGCAATTGG	alt_292_upstream	166	66	246	211	66	177	87	173	95	165
GCGTTTGAGTTTCGTC	alt_292_upstream	86	50	148	137	47	109	60	100	51	83
GGGTCCATGGCTAGTG	alt_292_upstream	23	16	34	21	6	19	7	35	8	17
GACAGTGTGTTCGGAG	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGAGACTCCCGCA	alt_292_upstream	50	15	63	42	22	38	25	48	25	38
CTTTACTCGGGGGTCT	alt_292_upstream	22	13	35	18	12	26	9	21	21	19
GTGATGTTTCGCAGAC	alt_292_upstream	136	62	177	140	67	146	69	135	76	128
GCTATGAGCGTTCGGT	alt_292_upstream	59	37	73	96	32	56	27	62	37	66
TCACGCCCAGACGTGA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCATCCCAGGCTC	alt_292_upstream	31	16	52	50	25	37	23	32	7	36
GCTAGTTTCACCTTCA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
CAATACCTGGATAGGT	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
GACTACACTAGTGTTA	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGAATACCTTGGC	alt_292_upstream	0	0	0	0	0	0	0	0	0	0
AGCCTCCAGATCATCT	alt_292_upstream	229	110	323	259	106	226	121	228	97	217
GGTGTGTAAATAATTA	alt_292_upstream	78	57	105	106	68	90	51	79	79	80
CATTGACGCACCGCAA	alt_292_upstream	109	43	150	103	49	89	50	103	58	89
GTGTTTTACGCTTGAG	alt_292_upstream	35	16	59	46	16	36	25	33	26	52
TTTATTGATTTGATGT	alt_292_upstream	72	34	87	79	37	78	30	90	42	74
GTTAGCGGATCACTCA	alt_292_upstream	39	29	26	25	29	17	26	24	41	22
TGTGTAGTACTGTGAG	alt_292_upstream	95	38	97	81	29	71	49	59	30	75
TTCCGCATTTCCCAAC	alt_292_upstream	29	20	24	32	17	26	9	37	9	23
TCCGTGCTCGCGGCTT	alt_292_upstream	73	34	97	64	26	79	33	51	31	69
CGGACAAGTGGACCTC	alt_292_upstream	32	11	32	26	19	32	18	26	22	27
GTCCATGATTGACTCT	alt_292_upstream	8	4	18	14	12	8	17	11	18	10
GTATTCTTCTGGGCCA	alt_292_upstream	93	36	105	104	50	75	39	93	36	75
CTTGTCTCGTCTGGCG	alt_292_upstream	9	6	12	17	4	7	1	13	4	6
CTAACGATGAGTATAC	ref_292_upstream	110	40	121	122	41	103	50	90	30	99
GTTAAATACCACTGAG	ref_292_upstream	97	35	141	141	39	87	40	118	49	90
CGTGGTTATTTGTATA	ref_292_upstream	81	26	101	95	32	94	33	98	34	76
TACAGCTCTACAGGTT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TCAACTCGGTTCATTA	ref_292_upstream	67	18	86	67	13	56	17	45	19	52
GCATCCTCGTCTTGTC	ref_292_upstream	173	77	200	200	59	159	83	173	81	158
CGGCAGGATCTTCCAT	ref_292_upstream	182	48	221	247	38	189	57	217	44	176
TGTACAGGTCCATGCT	ref_292_upstream	206	64	285	235	69	176	75	186	72	175
CTGGACCGACTTTCTA	ref_292_upstream	50	12	45	40	12	26	12	33	17	30
GGACTACTTGCGGCAA	ref_292_upstream	195	44	263	190	60	166	59	174	57	181
CCTCGTAGGGGCCGTA	ref_292_upstream	115	39	119	75	30	61	34	65	21	91
TACGCACAGGTAGTAC	ref_292_upstream	82	26	126	105	24	84	30	84	44	95
GATTTAGTATGGACTC	ref_292_upstream	118	54	172	146	44	155	43	154	70	128
CCTCATCCTTCCCCAA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTTCATGTGAGAG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGTCAGTCACCCG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCCAGGGGCGGTT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CCTACCATACTCCTTT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCTTAGGTGTTAT	ref_292_upstream	133	38	154	120	27	121	41	100	37	100
GTTGTACGTTGCCGTA	ref_292_upstream	259	66	302	278	70	235	104	251	99	202
TTCAGTGAGACGAATC	ref_292_upstream	63	15	69	72	16	46	16	67	23	63
TCCTCCGCCTCCTGAG	ref_292_upstream	125	34	178	157	51	135	47	157	72	131
GGCGGAGCTAATTGGC	ref_292_upstream	40	8	43	40	12	42	17	26	14	36
TTCTACTAGCAGAAGG	ref_292_upstream	85	25	133	101	32	94	38	99	31	73
CCGAGTGACAAGTCGG	ref_292_upstream	74	31	96	56	24	74	26	48	30	61
ACTCCCACGCACATCC	ref_292_upstream	2	1	15	2	1	4	1	7	2	4
GTTTCCGATGGCCAAA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTAAATCAGGTCA	ref_292_upstream	105	23	106	119	38	92	26	108	27	93
TCATTAACCATCGTAG	ref_292_upstream	72	41	97	77	38	52	48	66	44	53
TGGTTGCATGCCCAGA	ref_292_upstream	52	12	91	54	20	43	12	52	17	48
ATTACGCTACCTAGGC	ref_292_upstream	125	58	222	205	50	146	72	150	80	128
GGGCTCATTGAAGTCT	ref_292_upstream	147	55	191	186	56	159	47	131	63	139
TATTCAATTTCTGAGT	ref_292_upstream	252	77	257	244	80	249	83	205	78	218
TTGTATGTGGTTGCGC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TGCCATGGCGATGTTC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCTGATGAGTATT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTAAATACGGGC	ref_292_upstream	124	32	160	137	57	132	47	149	40	118
TCGGAATAAAAGCACT	ref_292_upstream	41	12	38	35	10	44	7	46	6	29
TTGTCGCCTGGCAACG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AATCCGATCGTTAGAC	ref_292_upstream	101	29	79	90	24	80	31	60	22	56
AACATGTGGGGTCGTC	ref_292_upstream	163	50	199	175	46	165	60	166	46	136
TTCGCGTGTGAGGCAA	ref_292_upstream	37	27	46	51	31	36	25	49	39	40
TCTCGTTACTGAGGAC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AGTATAGTAAGTTCTT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
GACCCTTTGTACGTGA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTCGGGGGGCAAG	ref_292_upstream	10	6	15	13	9	22	2	22	5	17
AACGGTGAATGGGCAG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTCAATCGATATA	ref_292_upstream	99	36	104	94	31	98	38	93	37	84
CGAAACTGAATAACGG	ref_292_upstream	254	99	315	319	87	278	87	248	74	255
CTGGCAACATTTGGGC	ref_292_upstream	289	83	337	316	109	259	119	281	111	239
ATCCTGCCGTACAGAG	ref_292_upstream	119	28	126	124	44	95	24	105	34	86
CCGCATTCTGGCTCTC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CTCCACTAGGCAAAGT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGCCCTCAAGTCT	ref_292_upstream	253	77	335	320	93	276	98	246	93	226
TATTTGATTGGGCATC	ref_292_upstream	112	47	143	144	32	121	29	114	45	104
CCGGGTTGCCTTTACA	ref_292_upstream	77	38	73	60	23	68	26	68	36	49
ACTGCTCCGGCGGACA	ref_292_upstream	151	55	197	161	30	189	55	173	53	152
GCGTTGCGCCTGTTCT	ref_292_upstream	72	28	87	83	28	65	33	73	32	40
TTGTATTAGATTTCTC	ref_292_upstream	110	43	115	136	36	117	36	95	32	109
TGCTCGCGTGCTGGGA	ref_292_upstream	9	3	16	10	4	9	7	8	0	5
GCGCTCATGTATCAGG	ref_292_upstream	55	26	64	55	19	51	10	51	22	39
GGTTAATGTTTCAAAG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AATTAGCGAGCTCTCC	ref_292_upstream	43	8	39	49	13	30	10	39	17	42
AGTCTCTTCGATCCTC	ref_292_upstream	90	23	88	100	30	66	27	91	31	58
TCCGAAATATGCCTCG	ref_292_upstream	224	57	238	217	63	179	61	183	61	178
GCTATCGACGAAGAAC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAAACGGGTAGTC	ref_292_upstream	122	37	131	123	32	95	36	82	39	126
CAGTCTAACTAAGCTA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
GGGTGGCGCTCCCAGA	ref_292_upstream	504	168	603	522	157	450	175	456	165	433
ACCTAGATTGCTTGCC	ref_292_upstream	70	41	102	115	44	79	40	71	50	77
CTTTTATGTTGTGCTG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TCACCTCTCCGACTAG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AGCCATCGTGGAGGCC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTAATGTGAATC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCTTTGCGTGCTC	ref_292_upstream	19	1	27	18	2	22	9	19	13	13
TGAATCCGGGACGATA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCGAGTTTATCTC	ref_292_upstream	71	31	95	77	33	73	35	86	34	93
CTTGAAAGTGATATAC	ref_292_upstream	139	50	163	149	45	125	59	115	53	114
TTGTTACTATTCATCT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TAGCACATATGCGGTG	ref_292_upstream	401	133	401	461	144	360	133	395	127	374
ACATAAGTTTGGATGA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTTCCTTCATTCT	ref_292_upstream	99	28	134	95	19	97	29	104	25	110
CCAATGGTATAGCTTC	ref_292_upstream	148	43	158	151	55	158	44	127	44	118
TGGGGACAAATGTGAT	ref_292_upstream	272	88	336	286	87	231	90	256	90	216
GGTCTACTTGATTGTG	ref_292_upstream	94	34	147	113	35	104	33	93	29	112
GATGTTTTAATTTGAA	ref_292_upstream	27	13	38	29	9	25	9	29	8	31
TCAGCAGCGTTGTGGC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGTGGCGACCTCG	ref_292_upstream	380	105	479	432	98	386	112	379	132	346
GTGTATTAATTCTTTT	ref_292_upstream	75	24	94	85	26	81	26	72	23	78
GCGTGTGGATGTTGTG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AACTATTCATTCACCA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCAGCCCGTACT	ref_292_upstream	69	31	99	102	44	92	36	109	52	83
CTGTGACATGGTAGTA	ref_292_upstream	139	54	166	162	54	155	51	142	46	132
CGTGTTGTAAACCTAC	ref_292_upstream	142	41	183	135	53	143	60	132	53	115
CCTCATTAACTCTCGC	ref_292_upstream	49	17	62	55	17	52	18	41	28	39
TTATCATAAGCAGGTA	ref_292_upstream	43	17	57	44	13	45	9	50	25	43
TCCTTTATCGACATTT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AATTGCCACCACTGTA	ref_292_upstream	48	15	54	51	22	46	17	44	31	55
TAAGGAGGTCCAGGGC	ref_292_upstream	122	42	144	152	30	137	47	99	43	108
CGCCTGACACATCCCC	ref_292_upstream	368	116	388	323	135	308	144	290	92	286
TTGCAATATGTTCCCT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGCACTCTAATGC	ref_292_upstream	30	14	36	38	14	39	8	46	18	34
GGAACGTCGCTTTGCT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAGAAGGCGGACG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TACTTCAGCAGACGTG	ref_292_upstream	48	19	49	48	15	40	14	47	6	27
ATCTTATTTGTTATCT	ref_292_upstream	234	55	225	219	60	197	60	193	63	196
TTCGCCATTGTGATGC	ref_292_upstream	112	36	111	94	35	83	39	90	33	73
GTTTGCGTATTCGGAG	ref_292_upstream	231	77	315	270	69	244	90	244	102	226
TGTAGTGTAAATCGTC	ref_292_upstream	613	201	733	605	208	569	188	605	214	575
CCTCGATATGTGTTTA	ref_292_upstream	76	23	119	93	30	97	39	70	40	87
GTAATCTTGCTGCCGG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGGAAGGCGGACG	ref_292_upstream	193	54	228	202	62	183	67	192	82	170
AGAGTACATTGAACAC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TGTATCGTTATTATGC	ref_292_upstream	376	119	492	470	137	396	138	372	132	358
TGTTTTTAGCGATCTA	ref_292_upstream	46	9	45	52	9	47	10	37	10	33
GACCTTTGATCCGACC	ref_292_upstream	15	3	21	19	10	11	7	10	7	10
AGAGGGTCTAATTTGC	ref_292_upstream	99	33	139	123	35	117	35	114	37	99
CCATGAGTCAATCGTA	ref_292_upstream	99	36	138	92	39	91	34	86	31	74
GCTTGTTCTTTACCGG	ref_292_upstream	27	10	32	19	14	16	14	22	7	24
TGCAAGGCCATCGAAT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCTATGCTTAAAT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCTACGGTTAGG	ref_292_upstream	9	4	17	13	6	16	3	10	0	19
CCGGGAGTATTCCCCA	ref_292_upstream	65	19	68	65	16	53	15	69	14	44
GTGAGTGTAAGTTCTG	ref_292_upstream	326	144	467	336	112	358	145	336	154	296
ATGTTCTATTTTATAG	ref_292_upstream	72	21	91	80	21	69	22	78	19	65
ATCGTGTCACACGGTT	ref_292_upstream	168	47	203	167	54	141	61	152	68	142
TCGATTGCGATCGAAA	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
ACAGCGTCTGGGTAAC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CATGAGTGCACACTGA	ref_292_upstream	168	51	203	181	55	128	37	164	58	149
CCTGGGCCAGCCACAC	ref_292_upstream	110	65	153	163	48	138	58	96	64	90
CTGAGCCCCGTAGCTC	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TATCAGCTCGGAGCTG	ref_292_upstream	98	35	131	115	39	105	50	113	43	72
CTACCATTCCGTCCGG	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
AACCCAATGTTGTTCT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTGTGAATGCAAT	ref_292_upstream	0	0	0	0	0	0	0	0	0	0
CGTCATCTTGGCCGGC	ref_292_upstream	105	43	146	130	38	96	40	88	47	69
CTAATGGTTAGGTAGG	alt_2754_reverse	5	7	6	5	10	6	9	5	10	4
GTGATCTTGTAGCCGT	alt_2754_reverse	25	35	25	22	29	20	32	24	37	17
AGTGATGCGTTTCCTA	alt_2754_reverse	16	11	13	10	25	10	42	10	37	8
GCTTCCATGCAATTGG	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGCGTGAACGGCA	alt_2754_reverse	23	40	25	19	25	27	36	24	35	26
GGAACTGTCTGCACAT	alt_2754_reverse	77	146	110	76	140	88	141	70	141	76
GTTAATAGCTACTCAG	alt_2754_reverse	19	39	23	13	34	19	33	16	31	19
GCCTTTTTGGGTCCAC	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
GGCACAAGTAACCGAG	alt_2754_reverse	23	40	34	33	40	32	27	26	45	22
AGCTGGAGGCAGATTC	alt_2754_reverse	12	25	22	23	32	17	24	22	29	20
GTACAATTCCCGACTA	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
CACGTGGTAGGGCTTA	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTATGGGGTACGA	alt_2754_reverse	14	33	17	11	19	9	17	15	14	11
CTCCTGGTGCTCATGT	alt_2754_reverse	5	10	6	14	14	7	13	2	9	5
CCGCCGGTAAACCCCG	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCATATAGTGGTC	alt_2754_reverse	9	13	7	11	19	9	20	9	19	10
TTGCGTCGCGGCGGGC	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGCAATTCGTTAA	alt_2754_reverse	18	33	23	12	31	16	23	20	31	24
TGTGCGTAGCTGTTCC	ref_2754_reverse	30	53	37	42	58	19	58	25	86	33
CCCATCACGAATGCCG	alt_2754_reverse	22	35	27	9	30	15	25	14	44	15
TGTTCAAATTAGCTTT	alt_2754_reverse	47	77	53	57	66	37	75	47	69	43
TTCCCGCGGCTTCGTC	alt_2754_reverse	16	33	17	19	46	15	44	16	37	13
CGTCGCCGTTACGATG	alt_2754_reverse	31	44	23	30	31	17	40	25	49	22
TTCTACAGAGTCCCCC	alt_2754_reverse	9	4	10	4	7	1	6	3	18	2
AGTTACTACCTCTCCT	alt_2754_reverse	0	0	0	1	2	0	5	1	8	0
ACTTATGGCATCTTTT	alt_2754_reverse	23	31	25	28	28	19	36	25	39	22
CATGTGACATTCATTT	alt_2754_reverse	13	21	16	12	37	10	22	13	16	14
CTTCATGCAAATCATG	alt_2754_reverse	10	15	9	2	5	1	8	3	12	3
CTTGGAAGTAGCCCTA	ref_2754_reverse	12	28	16	18	17	12	18	9	41	14
CCCTGTGTTTTCGCCG	alt_2754_reverse	17	35	22	17	28	13	35	13	50	16
TCACTTAACAATCTGT	alt_2754_reverse	9	13	5	8	13	12	8	4	21	0
TCCTTATGAGCATAGG	alt_2754_reverse	22	44	34	28	45	23	51	25	51	26
CTATTATAAACACCTC	alt_2754_reverse	23	42	35	23	43	29	38	27	42	16
TGATTTGTACGAGTCC	alt_2754_reverse	10	11	7	4	12	14	13	9	17	9
TGGGGAAACTAGGACG	alt_2754_reverse	14	38	15	14	32	21	45	12	31	15
GCATATTTATCAGCAC	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCCCAAGCGCTT	alt_2754_reverse	58	103	63	64	85	70	104	65	97	59
TTGTTACTGTGTTCTG	alt_2754_reverse	49	84	49	40	79	41	96	54	92	32
GTGCGCGGTTCTTACA	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
ATGCACGGTTTTACGA	alt_2754_reverse	16	33	31	16	37	21	37	27	38	21
TCGTATTATTTCTGGG	alt_2754_reverse	4	10	3	4	5	5	12	9	6	3
CACGCCAGATCAACAC	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTTGCACTTAGC	alt_2754_reverse	63	153	100	74	136	93	140	69	162	87
TTCTATTTACGCTCGA	alt_2754_reverse	3	14	11	12	10	5	16	8	11	18
TTCTCCGCAGTTTTCT	alt_2754_reverse	6	15	14	13	20	12	18	13	13	9
GTCGCGTTGACATATC	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTTTTAAAGATGC	alt_2754_reverse	7	34	10	9	36	9	46	11	42	4
TCTCTTCCGTCCGAGC	alt_2754_reverse	28	39	26	27	33	24	32	17	40	21
GGAGTGGGCCCTTCTA	alt_2754_reverse	62	107	64	62	101	37	102	55	124	39
GATACACGCCGAAGGC	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
TTATTGTAGTGGCCTA	alt_2754_reverse	6	11	13	10	15	7	4	11	21	9
ATTTGCGGTTTATGGA	alt_2754_reverse	77	126	75	76	121	68	118	69	138	76
CCCATGCTCGGTTATG	alt_2754_reverse	5	20	9	10	16	6	13	10	15	8
GCCGAGATGCTCTTGT	alt_2754_reverse	6	7	9	5	5	7	18	6	13	6
TGCCCTCAGGTTAGAC	alt_2754_reverse	14	27	21	10	27	15	25	10	37	19
CTCTTCCGTTCGCTAC	alt_2754_reverse	15	13	6	2	7	2	13	4	14	6
TCACGCATTAGCTCTC	alt_2754_reverse	67	91	77	72	116	71	88	60	92	70
CTCCGGCCTTAATATT	alt_2754_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCGTGCTGCGCCA	alt_2754_reverse	10	18	6	5	11	10	20	5	22	7
ATTGAATATCTTATCT	alt_2754_reverse	140	142	142	146	125	122	154	140	113	109
GTTTTTAGACCCATTT	alt_2754_reverse	59	24	76	51	25	48	27	49	34	43
TAAGACATCGGTGCTT	alt_2754_reverse	17	19	20	21	20	13	25	5	33	8
CGCCCTTTTTCTCCAC	alt_2754_reverse	37	60	40	33	45	32	48	42	42	29
TTTACATTTTAGCTCC	alt_2754_reverse	60	105	98	101	129	52	104	59	126	68
TCTGCCGGCGTACGTA	alt_2754_reverse	7	22	13	10	16	13	26	8	21	15
CTCGGATGCACTTTCC	alt_2754_reverse	10	26	8	7	32	8	43	10	42	10
CCTTCCGGTTATCCCG	alt_2754_reverse	17	27	11	10	22	6	33	10	26	6
GAAATTTGATTAGCCT	alt_2754_reverse	7	18	16	9	22	14	20	4	16	6
TGCAGTCTACGCGACC	ref_2283_reverse	22	39	41	33	29	28	36	27	28	21
GGTCTGGTCTTCATAT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGGTTCAAGGCAG	ref_2283_reverse	53	58	64	63	46	59	70	57	57	47
AGAACACACCGTATAC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TGACTAGGCAACGTTC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TCCTAGCAAGGGGATC	ref_2283_reverse	29	20	39	25	21	21	24	25	26	21
TTGGGACCATTCCTGT	ref_2283_reverse	35	31	49	30	38	56	38	51	28	41
AGGTCGAACGACATAT	ref_2283_reverse	12	12	9	14	10	8	5	15	11	14
CGTTTATATTCATAAG	ref_2283_reverse	8	4	8	7	9	7	1	6	10	9
AGTGCAAACCAGATTC	ref_2283_reverse	111	78	153	107	100	102	106	96	112	94
TTCCACCGCCCTTCCA	ref_2283_reverse	25	13	24	20	17	10	19	29	16	18
TCACGCTAACGTTTTA	ref_2283_reverse	22	36	42	33	20	29	29	37	29	32
GCCATTTACTCTAGCG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGGGAACGCCTC	ref_2283_reverse	36	31	56	45	41	43	45	52	47	35
TCTGCGCGGACATGTA	ref_2283_reverse	16	28	33	36	10	23	17	17	20	12
GTGGCAGAGTCAGCTG	ref_2283_reverse	62	53	63	53	59	59	49	43	41	48
GGATGGCAGGTTATTC	ref_2283_reverse	24	20	34	17	16	21	16	22	9	25
TCAAGCGTGTTACTAT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
ACCATGGTATTTTTCT	ref_2283_reverse	0	2	0	1	1	2	4	2	1	0
TAGGTACCGTCATTTA	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCCCCTGTATACG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GCCATTAACCAGTAAT	ref_2283_reverse	12	4	14	6	2	15	12	7	6	7
TCTCATTTTTGGACCC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGCCTTGAGCAAC	ref_2283_reverse	49	46	60	56	40	38	50	46	40	38
CGAGGAATCCCAGTGT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTAGCTCGTACTA	ref_2283_reverse	25	18	22	26	13	17	19	15	13	15
CTATGAGTTTGATCCC	ref_2283_reverse	2	0	5	3	4	1	2	3	1	3
GGTGCCATTTAGCGCA	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTGATGTTCGACGTGC	ref_2283_reverse	12	8	11	11	17	11	6	9	17	11
GCGGCATTCTACACAG	ref_2283_reverse	73	45	62	64	48	58	53	50	64	56
CTTTGGGAATCTAAAC	ref_2283_reverse	1	0	0	0	0	1	0	0	0	1
TTCCTGGAGAACGCTT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGTGTACATGTAC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GCAAAAAGCGCTGGGT	ref_2283_reverse	34	39	42	21	39	31	33	29	30	20
TCTCCGGTTATTCTTA	ref_2283_reverse	49	48	54	58	63	50	58	55	65	37
TTTCAATTACACTAGA	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCGAATTTATTG	ref_2283_reverse	70	50	110	77	61	79	56	69	55	56
TTCGAACTCTCGAAGG	ref_2283_reverse	22	22	12	6	24	14	23	11	15	15
TCCCATCCCATTGTAT	ref_2283_reverse	10	14	9	12	14	6	9	10	14	9
GCCTACGGAAGAATGT	ref_2283_reverse	64	61	79	63	69	59	64	57	73	59
TTCTTGCTGAAGTCCC	ref_2283_reverse	31	17	25	15	33	14	17	23	21	20
GGGATTGGGAATCCAG	ref_2283_reverse	54	42	68	59	47	41	40	50	54	59
TGTGCCTTTTTTACGT	ref_2283_reverse	95	131	144	109	122	124	156	116	121	121
GGCTTCGGCATACGTG	ref_2283_reverse	66	77	110	103	80	68	80	76	74	87
TGGCTCGCGGTGTACT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTACCCATCTTATGTA	ref_2283_reverse	31	18	38	27	28	20	20	23	23	23
GATTATTTGGGTTCCC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
ACTCAAATTACGTTAT	ref_2283_reverse	38	42	57	40	32	53	47	56	34	43
GATGGAACTGGTCCTC	ref_2283_reverse	103	102	131	128	98	84	118	111	96	82
AGGCTGGGGTTTGACG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCGAAGCTTTTCT	ref_2283_reverse	39	25	64	43	42	40	47	46	42	33
ATACCGCTTGGTACGA	ref_2283_reverse	56	32	33	38	55	41	34	39	46	31
GGTTACGACGTCCTAA	ref_2283_reverse	40	31	41	60	28	43	36	41	29	33
CTGGTTCTCATTGACA	ref_2283_reverse	7	9	14	10	8	7	7	16	12	6
GCCAAGCATACTGGGC	ref_2283_reverse	54	29	54	57	51	33	57	36	33	40
ATTCTTCATATGCGAG	ref_2283_reverse	30	22	27	32	29	18	21	33	38	28
GCGTATTAACGCTCTT	ref_2283_reverse	37	15	54	31	20	26	35	40	18	44
AGGATTTATAGTAGAT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
AGGACCGACTAGCCCT	ref_2283_reverse	19	9	32	18	23	18	18	11	20	26
GTGATTCAATTTATAT	ref_2283_reverse	212	173	271	191	175	186	193	192	180	178
TCTTACCTTCGAAGTG	ref_2283_reverse	12	27	37	24	26	21	17	15	24	12
ACACATCAATACAAGC	ref_2283_reverse	18	16	29	18	21	22	15	16	17	20
TTACTGTAGGATAATC	ref_2283_reverse	90	75	102	83	91	83	89	94	72	89
CCTGGGGGCAGCCTAG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGAAAGGTGCTCC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCGACACATTCTC	ref_2283_reverse	57	38	55	43	53	50	71	56	51	41
GTCTATGCGTTTTAAT	ref_2283_reverse	104	100	130	126	104	91	94	95	120	88
CTGGGACCAATATTCG	ref_2283_reverse	71	53	77	101	78	78	54	89	73	87
CCCGCGTCCGGACAAG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
CCCAAGGATTACTCGT	ref_2283_reverse	6	8	18	9	6	9	7	7	9	13
CCGTTTAATTTCTCTT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TCTATCACTTCGGCTT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTTACAACGCATATGT	ref_2283_reverse	17	25	18	24	13	22	31	13	20	18
CATCGTGTCCGTGTGT	ref_2283_reverse	27	24	29	17	28	19	39	19	34	25
CACTCATATTCATTGT	ref_2283_reverse	3	3	5	9	2	3	8	4	7	2
CGGGTATATCCTGTGT	alt_2283_reverse	23	32	41	33	39	42	35	37	22	38
TTTTCAGGGATATCAC	ref_2283_reverse	32	29	29	23	18	17	29	29	31	17
ACGTTTGTCTCCAACT	ref_2283_reverse	51	22	55	54	31	42	36	59	41	41
GGTTCAGCCTAGTGTC	ref_2283_reverse	19	20	19	23	22	24	16	11	27	15
CTGCTTTCACACAGCG	ref_2283_reverse	2	0	2	2	1	1	2	4	2	1
CGCTGCCGCCTTTCTG	ref_2283_reverse	27	13	23	26	19	18	10	20	16	16
ACACTTCGGGGCGACC	ref_2283_reverse	46	43	39	50	32	40	35	35	26	40
GGTGAGTTTTACGCCG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GAGGCTCATCACATCG	ref_2283_reverse	46	38	60	57	41	60	39	48	46	45
CTACGTTCCGAAATTC	ref_2283_reverse	20	25	31	29	21	27	30	31	16	20
TTTTACGTTATATAGA	ref_2283_reverse	12	13	21	19	11	13	16	9	21	9
TGATTGATCAACCTAC	ref_2283_reverse	10	5	9	4	2	6	4	5	6	6
TTACTGTCCTCGTAGC	ref_2283_reverse	21	22	25	14	14	25	18	20	22	23
AGAGTTTTTTTGTTCA	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTACGCGGTGCCTTAA	ref_2283_reverse	30	22	33	33	27	28	29	21	33	36
CTCCTACGATGTTTTC	ref_2283_reverse	46	36	53	45	45	51	37	48	42	36
CCCCCGGTAGCGTTAC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGTATCTTCAGAA	ref_2283_reverse	96	57	93	82	59	87	79	78	61	78
CAGGTTTATTATTCTA	ref_2283_reverse	32	16	26	25	14	26	30	28	15	15
GTAGTTTGTCCTTGCA	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
ACGACTCGCCCAGGCT	ref_2283_reverse	50	62	72	51	43	57	64	62	58	66
CGACTTCTGCAAGCCC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
AGCTACTACGTGCTAC	ref_2283_reverse	4	10	12	9	10	3	19	8	9	5
ATTTCTCCCAGTATAG	ref_2283_reverse	2	1	2	1	2	0	6	3	0	6
CACTTTCTTGCTGATA	ref_2283_reverse	58	50	61	65	50	53	47	55	38	48
ACTGGCCAGTCGAATA	ref_2283_reverse	153	122	170	135	119	136	115	132	111	106
GATGCGCGTATGCGGT	ref_2283_reverse	6	4	5	5	2	4	3	3	3	4
CTTCCACTAGCATGTC	ref_2283_reverse	61	36	71	55	40	54	49	59	48	61
TATGAACCTAGTCGCT	ref_2283_reverse	20	15	29	25	20	18	20	25	16	25
GGCCCCCCTTAGGCGT	ref_2283_reverse	30	32	32	34	25	25	24	31	47	33
AGAAAAATACTTTTAA	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTTAGTCATGAG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTAGGGTTGGGTA	ref_2283_reverse	73	71	61	68	65	71	61	77	64	61
GGCTGCTTATAGGATC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
CACGAATCTATGATTT	ref_2283_reverse	159	93	214	165	109	154	105	132	112	126
AAGCTGCCCATTAAAC	ref_2283_reverse	66	64	74	81	74	75	63	67	78	78
TCCTATTAGAACGCTT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTAGTCCGTTCAA	ref_2283_reverse	4	2	1	2	3	5	4	5	4	6
CGGCACGGTGCTCGCT	ref_2283_reverse	26	19	41	28	32	22	19	38	21	35
CGAAAGGTCTTCATTT	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGCTACAGTGTGG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
ACTCATATCCGACATT	ref_2283_reverse	82	55	73	80	42	59	64	72	58	69
TCCGACACAATCTCAA	ref_2283_reverse	3	6	12	13	3	4	4	6	14	7
TATGAAGCCCGTTATA	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TCATTTCTATACGGCT	ref_2283_reverse	8	3	5	3	1	7	6	6	5	8
TGAGAGTCCTGAACCG	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTCAACGAGGAAG	ref_2283_reverse	99	106	98	85	98	102	106	87	120	92
CGTCTTTGACTGAGGC	ref_2283_reverse	91	83	116	86	82	91	108	100	88	81
ATGTTTAGCTCGATAC	alt_2283_reverse	53	41	45	38	40	49	29	32	38	45
TTTTCAGTTAATAACG	ref_2283_reverse	9	8	11	7	10	16	10	10	5	8
TTCGCATCCCCCTTCG	ref_2283_reverse	46	49	71	59	52	44	65	51	64	56
GATTTAATGTTGGGTA	ref_2283_reverse	20	15	23	22	21	13	17	19	10	25
TACAGTAGGATGCGGG	ref_2283_reverse	84	72	114	78	61	77	64	85	74	70
GGTATTCCAATACGCA	ref_2283_reverse	93	91	151	99	83	102	99	107	82	114
CCGGTAGAGTGAGGCC	ref_2283_reverse	19	13	9	14	29	16	19	9	20	8
TTCGCACCACAAATTT	ref_2283_reverse	11	11	20	9	6	5	7	11	8	3
GTAACGTTTCGCTGAA	ref_2283_reverse	24	21	30	13	28	16	12	14	30	10
GCCGTAAGGCTAGTTA	ref_2283_reverse	7	12	7	5	5	5	9	6	6	9
AACGGGTACGATGTGC	ref_2283_reverse	3	5	7	4	3	3	7	8	7	1
TCACAGGTATTAATTT	ref_2283_reverse	18	28	26	33	21	20	21	23	18	22
CTTACACTAACTAATT	ref_2283_reverse	170	107	185	161	132	162	121	148	142	143
TGTGACCGGGGTCCAT	ref_2283_reverse	20	21	17	13	9	16	10	20	15	16
GTTCTTTACTACTTTC	ref_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTTTCTTATCAG	ref_2283_reverse	29	18	24	29	17	19	17	31	14	27
CTGTACCCGGGATTCT	ref_2283_reverse	20	24	22	17	17	15	14	24	22	19
ATTTGCGCCTGCCTGC	ref_2283_reverse	105	87	138	143	91	105	102	129	117	113
CTCAGGCATGGGTAAC	ref_4632_fdr	30	23	33	29	16	27	21	28	28	19
CGATAGAACCCGCCGT	ref_4632_fdr	76	82	93	79	68	78	71	68	72	68
CTTACGCCGGAACGAT	ref_4632_fdr	10	7	16	13	11	15	17	6	12	12
TAACTTTTTGGGTATG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CCTCACAAATCGCTCG	ref_4632_fdr	42	39	41	37	28	41	37	36	39	33
TTACTTTTTGGGTATG	ref_4632_fdr	256	272	309	264	275	266	258	264	303	196
TTCCTACACTCTTCCC	ref_4632_fdr	5	22	6	3	19	5	21	4	16	5
TCATCTTCTACTGCAA	ref_4632_fdr	147	104	162	159	118	139	110	136	121	106
TGGGCGCTTCGTGTAA	ref_4632_fdr	46	41	57	32	34	30	29	44	37	26
AGACTTTAGCGGTAGT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GGTGCCCGGTGATCGG	ref_4632_fdr	7	7	14	8	8	12	5	7	3	10
CTCGTTTTTTGGTATG	ref_4632_fdr	32	28	52	51	32	51	31	38	30	41
GCACATATCGATTTAA	ref_4632_fdr	37	34	47	45	32	45	41	40	34	45
AAAGTTCACCGGCTGG	ref_4632_fdr	5	14	18	11	12	7	22	14	23	9
TTAGATACGTCCATTT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GGCACCTCGGGACCCC	ref_4632_fdr	38	20	48	35	22	35	23	35	18	24
TATTAGGTTCACATTC	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGCCAAGCCCAAA	ref_4632_fdr	6	6	5	3	2	3	2	4	3	3
TGACTTATTACGCAGT	ref_4632_fdr	21	17	30	14	17	16	18	14	21	13
CCTAAATTATTATTAT	ref_4632_fdr	4	10	13	5	7	8	13	8	12	4
TAACCACTTTGTTCCT	ref_4632_fdr	13	30	17	16	19	10	14	14	15	13
TACGTAGCTCCGGAAT	ref_4632_fdr	5	3	12	4	6	6	2	6	2	4
TAAATCGGGTGTCCAA	ref_4632_fdr	23	18	40	37	25	36	22	28	25	27
CGTGGTATTTCTATAG	ref_4632_fdr	8	7	5	7	7	5	3	5	10	4
AGCATTTGTCACGGAG	ref_4632_fdr	4	1	8	1	3	1	4	6	3	1
TGCATTTTTAACTACA	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CACCAGTACTCCTATC	ref_4632_fdr	32	28	29	28	27	14	26	20	33	31
GTCCCGCGATGTGTGT	ref_4632_fdr	15	10	15	25	12	20	20	20	12	18
CGTGTGGTCACGATCT	ref_4632_fdr	9	5	5	13	5	3	8	11	14	7
TCCTCAAATCCCTGGG	ref_4632_fdr	24	11	16	10	19	12	12	19	17	14
GGACGATGGGGAAAGT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
ATTACACGCTTGGCCT	ref_4632_fdr	18	11	23	13	17	24	27	20	14	16
GGGCTCTTACTGAATC	ref_4632_fdr	71	68	70	74	57	60	41	52	52	55
CAATTCTCATTATTGA	ref_4632_fdr	11	8	14	11	14	12	12	11	6	9
TGTCGTAGCTCTTTTG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GACGGATCGGGTGTTC	ref_4632_fdr	17	15	19	23	15	22	11	27	10	10
TGCTCCCCATCGGGGC	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTCATAGATTTAC	ref_4632_fdr	7	7	5	12	11	7	9	12	8	5
CCATTTCTCCCAGAGC	ref_4632_fdr	14	10	5	23	4	9	10	10	14	11
GCACTAACTTATCTAG	ref_4632_fdr	7	1	4	0	3	4	0	2	3	0
ACCCTTTTTGGAGCTG	ref_4632_fdr	41	47	56	45	46	40	30	57	54	42
AGGGGTTCAGACATGA	ref_4632_fdr	33	28	42	36	18	23	22	26	25	34
CTACAAAACTCGTTGG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
ACACATAAATCGTTAA	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
TGAATCAACTCGTCTT	ref_4632_fdr	2	4	6	4	3	6	2	1	3	1
CTACACCTAGCTGGAA	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCCTTTGTTCCTA	ref_4632_fdr	149	14	161	149	31	125	31	167	19	117
CCGAGTTAAACGCCTC	ref_4632_fdr	52	60	58	51	47	54	52	53	42	41
CCCGGCAGGCATTCGA	ref_4632_fdr	15	16	18	10	8	11	10	15	16	11
TACTTTAGCGATGGAT	ref_4632_fdr	28	22	23	19	12	22	24	22	17	30
TCAATTCGGTGCCTTC	ref_4632_fdr	7	13	15	10	6	13	13	7	9	6
CCAAGGTGCTCAAGCG	ref_4632_fdr	1	5	4	3	5	1	11	5	7	4
AGGCGCCAAGTCACGT	ref_4632_fdr	4	0	0	2	1	1	2	5	1	4
GGTCAGCGGTGATTTT	ref_4632_fdr	120	85	145	122	101	124	112	102	91	100
GAGACTAGGAGGTGGG	ref_4632_fdr	26	21	31	29	29	24	26	27	20	31
GTACTATGGAAGGTGG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GATCTTTTTTTACCAC	ref_4632_fdr	44	30	56	40	28	37	37	31	31	27
GTGTGTGTATTTAGGC	ref_4632_fdr	29	26	24	18	15	14	21	25	28	14
CGACCTCTCTCCTCTA	ref_4632_fdr	22	16	22	30	20	17	31	25	17	14
CTTCTCTACAAGAACC	ref_4632_fdr	22	20	20	21	28	21	14	23	33	10
GTGGCGTTAGGGGCCG	ref_4632_fdr	8	6	9	13	11	2	8	4	8	9
GAATCCGTTATATTTG	ref_4632_fdr	45	35	43	53	45	39	24	39	39	39
AGGTTACTTTTCTCTT	ref_4632_fdr	91	50	77	112	58	72	60	86	78	67
ATCCAATTGGGTTATG	ref_4632_fdr	144	117	160	130	132	124	121	100	140	115
GCATGCGTTCTAATCG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
AGCATCGTATTGAACA	ref_4632_fdr	2	2	3	0	1	1	0	1	0	1
ACCCTCCTGGACTTGC	ref_4632_fdr	2	12	9	7	7	3	13	8	13	0
TCGTTTCGGGTAAACT	ref_4632_fdr	51	31	58	44	39	31	37	50	35	44
GTCGAACCGCAGCCCG	ref_4632_fdr	18	18	25	12	14	10	22	15	19	12
TCAGGGGGCCCCAGGA	ref_4632_fdr	13	14	21	11	15	21	12	16	17	5
CTGTACAGAGGAAATA	ref_4632_fdr	50	46	79	75	55	75	39	59	54	50
GACTCATTGATGGAGA	ref_4632_fdr	14	25	32	26	23	26	19	23	24	17
TTGTCGGTTGACACTT	ref_4632_fdr	6	4	3	3	12	4	13	6	8	5
AGTTGTCCTGGAGGAT	ref_4632_fdr	11	8	16	15	13	16	14	13	7	15
AAACTTAATTGTTTGC	ref_4632_fdr	40	37	41	28	27	25	23	33	30	33
CGGTTTTCAGGTTTAG	ref_4632_fdr	12	11	23	15	17	16	22	15	15	25
GGTGTTACGAAGTATG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCCTGTTTTTTGT	ref_4632_fdr	6	31	5	4	24	5	34	5	36	2
CAATCAAATGCTGGGA	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CACTTCAGATTCACCT	ref_4632_fdr	35	34	51	40	48	46	66	41	44	32
TTATATCAAAACTTAT	ref_4632_fdr	110	93	122	128	74	102	87	84	105	83
AGTTATTCGGATGACA	ref_4632_fdr	81	48	77	91	56	88	70	64	57	75
TGCGGCTCATAGGGTT	ref_4632_fdr	17	15	27	31	16	18	14	13	18	18
CACCCACCGCTCCCCG	ref_4632_fdr	22	22	31	28	21	25	19	26	30	21
CTCTGGGTAGGTTATC	ref_4632_fdr	58	38	62	45	38	30	44	48	37	30
CCGAGAAGTAATCTGT	ref_4632_fdr	4	4	0	3	1	3	6	2	1	3
CCGGTGATACACGGGT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCGACCACTTGTA	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGGCGGAGCCGCC	ref_4632_fdr	79	64	110	65	47	77	54	62	67	60
ACGGTAAATAACTGTT	ref_4632_fdr	70	48	66	48	54	40	45	44	52	47
CGGCGCCACCACACAG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGTCGTACCGGGC	ref_4632_fdr	21	11	17	14	13	22	7	15	24	18
CCGCCCAATCGTCTAA	ref_4632_fdr	36	54	34	42	49	46	54	35	50	28
TGCGAACGTTGGTGGT	ref_4632_fdr	105	101	102	123	102	111	93	95	95	71
GCATTAGTCTGTATTC	ref_4632_fdr	43	42	50	35	42	52	47	41	38	35
AGTGCACAGCTCCCGA	ref_4632_fdr	15	24	25	25	34	16	23	16	19	19
CGCTGTATTATATGAT	ref_4632_fdr	15	15	12	18	10	14	12	15	9	17
GGGGCGCCCTCGAACG	ref_4632_fdr	0	0	0	0	0	1	0	0	0	0
TGCCCGTTTTTAGAAG	ref_4632_fdr	28	41	42	39	40	37	54	37	49	37
CAATCAATTGCTGGGA	ref_4632_fdr	90	65	119	100	75	75	69	77	82	68
GGTGGTAGATTTCCAC	ref_4632_fdr	38	49	48	40	49	34	46	30	51	37
CAATATACAGCTTAAC	ref_4632_fdr	2	1	0	1	0	2	1	0	1	0
CCGTTCCACTCTCTAT	ref_4632_fdr	15	12	14	15	19	15	22	17	16	9
CGTCTGTAGACTATGT	ref_4632_fdr	2	0	4	0	4	1	1	1	4	1
TACGGTTGCTGGTCTA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTTTGACCTAAG	ref_4632_fdr	33	27	40	29	38	27	21	26	35	22
GCATAAGTCGCATACA	ref_4632_fdr	41	63	68	72	45	47	55	52	54	43
CCACCACCCTGCGTTG	ref_4632_fdr	9	33	23	13	14	10	21	4	22	12
TGCCGGCAGCAGTTTG	ref_4632_fdr	115	92	122	120	117	121	95	104	92	95
GGTCGGCTTCATTCGC	ref_4632_fdr	5	5	2	7	0	4	2	2	2	6
GATCTTATGTCGTAAG	ref_4632_fdr	52	40	65	39	25	40	23	34	31	43
TTTGATATCCTTCCCA	ref_4632_fdr	7	6	13	15	12	7	5	11	10	14
GCGATCTTTTATGAGC	alt_4632_fdr	154	138	161	126	149	146	142	135	135	109
CACTTCTACTTCAATG	ref_4632_fdr	36	36	48	50	33	42	47	42	55	53
TTGCCCGGTGTAATCC	ref_4632_fdr	37	39	45	28	26	26	39	25	34	40
GGGTGTCGAGCCCAGC	ref_4632_fdr	51	32	63	43	38	53	39	44	45	60
TTCATAACGTTTAGGG	ref_4632_fdr	82	70	100	82	61	83	86	54	65	63
GTAGATTTGAGGATAT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGGTCTGTCTCGT	ref_4632_fdr	26	22	39	24	19	20	9	23	17	17
CCCCAGTGTGAAAGTG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
AGTACAGCTCGACTTT	ref_4632_fdr	22	24	38	28	21	16	26	23	21	19
ATTGAGGCCTTCGTGC	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGTGTCCCACGCT	ref_4632_fdr	6	4	5	5	4	7	5	10	2	8
TTCTGCATTTCCTTTT	ref_4632_fdr	6	17	7	14	7	12	11	9	10	7
TTCAGCAGATCTTTTC	ref_4632_fdr	25	16	23	14	15	21	20	23	17	18
CGCAGGGATTAAGTGC	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCAGATAACACCTGCT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
TGGAAGGTCCTGAAAA	ref_4632_fdr	28	24	34	28	24	27	37	27	32	25
TACCGGTAGACTGGGT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CGAGCCCCGCTTTCGT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCGGTCTGGGATG	ref_4632_fdr	80	71	92	80	61	85	72	71	70	88
ATTGACATATTATTGT	ref_4632_fdr	81	70	91	93	57	65	64	66	72	69
TGAAGGGTAGCAGTGC	ref_4632_fdr	24	26	27	23	21	27	17	16	25	20
TCGCGGGCTAGGCGTC	ref_4632_fdr	20	13	20	20	11	14	11	16	11	18
TTTTTTTAAGCATGCT	ref_4632_fdr	18	21	20	11	11	18	14	25	15	20
TTAGTCCGTAAGGTGA	ref_4632_fdr	81	76	92	76	63	82	83	75	63	55
TTTACTCAGTTTATGT	ref_4632_fdr	5	2	2	4	4	5	7	9	5	4
CTAACCCGTGCTACAC	ref_4632_fdr	59	45	61	60	62	67	44	48	45	50
AGCTCAAATACTTCAA	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CCTTACTCGTTGCCAG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
GACAACCAATCTCATC	ref_4632_fdr	5	11	8	13	17	9	8	8	10	12
CCTGACGGCACCAAGT	ref_4632_fdr	10	16	14	10	12	12	24	12	14	8
AATTCGGATTCCCAGT	ref_4632_fdr	8	10	12	7	7	7	2	7	1	5
ATCAGCCCGACTTCAT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTACGCATTCGCC	ref_4632_fdr	1	7	6	1	1	2	14	3	12	2
TTAAAGGCGTTAGTCT	ref_4632_fdr	282	245	336	277	265	237	244	232	227	272
AGCATAACCTGCACCT	ref_4632_fdr	108	98	123	101	103	99	117	98	103	106
ATTTATTCGGTTAAAG	ref_4632_fdr	16	13	17	14	8	15	16	11	27	10
TGCAGATTTCGATGGT	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
ATCGATAACGGGTGAC	ref_4632_fdr	4	7	4	8	3	5	5	3	2	4
CCCGTTATTCAGTTTT	alt_4632_fdr	47	80	90	60	90	67	66	56	86	44
CATAGGCATACCATAG	ref_4632_fdr	122	119	154	112	131	118	152	110	114	122
AGAAAAGGTTCACCCT	ref_4632_fdr	72	63	100	61	69	79	45	68	54	58
TTAAGCGGTGAAGTGG	ref_4632_fdr	72	45	110	65	59	73	46	69	60	76
CCGGAACGCTAGATGC	ref_4632_fdr	41	62	35	60	67	34	49	31	83	23
TAAGTCTAACAAGTAT	ref_4632_fdr	19	33	43	32	21	27	21	34	31	27
TGCGCATCTAGACAAA	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGGGTGCGTAGTG	alt_4632_fdr	94	124	138	113	103	123	116	94	104	96
GTTAAATAGTATGATT	ref_4632_fdr	128	109	156	144	90	106	100	114	103	105
ATCATTTGTGGATCCC	ref_4632_fdr	147	112	187	165	131	147	133	131	139	128
CCTTAGCGATGCCTTG	ref_4632_fdr	15	10	13	11	14	16	17	14	21	14
TTATCGATATTGACAG	ref_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCACACGGGACTTAGA	ref_4632_fdr	22	23	24	13	26	18	29	14	22	18
CATGGATTTCATGCTA	ref_4632_fdr	106	90	125	115	71	109	80	93	93	100
GCCCGATGGATAAGCA	alt_6076_new	17	21	19	31	20	16	28	11	20	17
TTTCTCTTCTTGGATA	alt_6076_new	21	24	27	18	25	18	26	21	18	19
TGCTATCTTAGCATCC	alt_6076_new	32	44	60	34	57	51	54	48	36	31
AAATTTATGACATACC	alt_6076_new	36	31	46	40	37	32	34	36	38	28
CTGCACTGAAATATGT	alt_6076_new	70	77	71	79	72	73	86	87	93	67
TGTAGTACTTCTGTCA	alt_6076_new	12	18	21	17	21	20	23	10	13	9
TTCCAGTTTGTGTAAT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GCTCTTATGGACCGCA	alt_6076_new	2	3	3	12	4	4	4	6	6	4
TGACAAGAGCTAGCAA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
ACTCGTCTCCATGCCA	alt_6076_new	11	8	12	8	8	9	4	9	14	13
CGTTTGGAAGCCACTG	alt_6076_new	15	24	24	26	26	31	22	28	25	23
CAATCCTTAGTTCTCT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TCGGGTTACGTAGAGT	alt_6076_new	31	34	43	35	52	36	44	24	42	35
GTGGTGATCTTCCCAG	alt_6076_new	18	29	15	13	36	21	20	19	23	20
CTGCCGAACGCCATGA	alt_6076_new	31	44	37	37	47	40	51	33	70	37
TTTAAATGTGCACTCC	alt_6076_new	6	9	12	9	11	7	16	5	18	8
CAAGTTGAAATACTGT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GCGATCATTTGAATTA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
CACATAGCTTTTATCT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TGGGTCTTAACAACTG	alt_6076_new	6	11	10	9	7	9	14	12	14	4
CGGATGTGCAAAAGAT	alt_6076_new	30	49	40	31	46	20	46	24	56	20
ATGTGACTAATTGGCC	alt_6076_new	0	0	0	0	0	0	0	0	0	0
CTTGTCCTAAAACGTC	alt_6076_new	30	21	32	21	24	20	31	18	27	21
AGTGCCTAACTTACGA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
CTATGATTTCACATAT	alt_6076_new	36	23	36	25	23	30	27	31	24	25
TTAAATAAAATGAGGA	alt_6076_new	27	28	41	25	33	26	31	23	17	15
CACGGTGCGAAGCTCA	alt_6076_new	26	23	37	24	23	27	21	25	28	25
GCCAGTATTGCTTGCT	alt_6076_new	5	1	5	4	4	2	2	5	2	6
TCTATGTGATCAGTTT	alt_6076_new	67	69	103	70	78	64	97	47	67	70
GCGAAGCCTCCGGGTC	alt_6076_new	33	22	28	26	26	23	32	29	34	18
TTTGAGTACTTATTTT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
ATTTGCTGGGCTCGTG	alt_6076_new	10	13	20	11	16	17	18	8	10	13
CGCAGTATTGCCTTTA	alt_6076_new	42	45	46	47	55	46	54	32	59	43
GATATCAGTTGTTCAG	alt_6076_new	25	25	23	18	20	16	38	31	38	30
TGTGGCAAACGTTATA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GCCACATGTCGTGCAG	alt_6076_new	160	142	141	137	151	125	125	135	139	114
AGGGGGCATGTTCCCA	alt_6076_new	7	8	7	7	10	3	13	7	2	7
TATTTTGCTACGAGGC	alt_6076_new	9	9	10	7	8	17	14	6	10	4
CACAGGGTGCAATTGA	alt_6076_new	1	1	4	1	3	3	1	1	1	2
CGAACTAAGTCTTGGG	alt_6076_new	5	7	4	3	6	7	1	5	6	4
GCGCTGTAGGTGGTTC	alt_6076_new	25	35	47	35	48	31	39	42	51	29
GATTTGCAGCACTGAA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GTCTAGAACAGTTGAC	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TCTTGGGTGGGCGTAC	alt_6076_new	0	0	0	0	0	0	0	0	0	0
AACCTTGTTTGATCCA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GTCATGAGGGGCCGAA	alt_6076_new	29	36	40	29	28	27	29	33	22	21
ACTTTGGTTCTCGCTA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GGCTTATTATTCGGCT	alt_6076_new	9	9	11	17	8	13	12	15	8	14
ACAAGTAATTGGTCTG	alt_6076_new	10	11	6	3	14	8	4	9	5	6
AGCTGAGTAAGGACCG	alt_6076_new	7	13	6	12	1	8	5	11	7	5
TCTTGACGTCCTTATG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TGCGTTCTTGTTCAAA	alt_6076_new	19	21	24	19	18	22	35	12	33	17
TTGATCCGCTCGCGCA	alt_6076_new	34	27	41	23	38	38	29	25	40	31
GGGTCTCTTGATGAGG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
ATCCTGGCGGGGCTCA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GGGATTAGGCTCACCT	alt_6076_new	32	35	30	28	39	37	53	31	51	25
ACGTTTTATTGCTCGT	alt_6076_new	53	65	56	63	75	42	80	44	65	35
ACCACGGGTTTAATCT	alt_6076_new	13	24	15	13	21	14	15	12	14	15
TAACCACGTGTCTTTT	alt_6076_new	18	13	31	16	27	17	26	22	25	14
TGGCGTTGCTATTAAT	alt_6076_new	18	23	21	22	26	23	25	19	17	15
CACATAAACTGCGCCA	alt_6076_new	61	61	54	62	56	58	60	55	60	47
CATGCCTGTCCTTCTG	alt_6076_new	38	34	54	29	49	39	38	30	53	29
TGGGTATAGGCCATTG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TTGCGACTCTGGACGG	alt_6076_new	29	24	27	32	25	27	27	10	20	16
GAGGAACTCTAGAACA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TGTGCCACCTCCCCTC	alt_6076_new	42	36	52	31	42	36	38	31	31	32
ATGGATCATCCTTCCC	alt_6076_new	56	46	58	66	52	58	62	51	71	57
TATACGTCTTCTTGAC	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TTGGTACACCGCCGCT	alt_6076_new	33	33	46	43	45	36	39	27	65	31
CATTGTAATCACCCGG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
CCATACCTCGCTTGAG	alt_6076_new	38	26	42	22	35	34	29	32	23	20
TTACCCGTTTACAGTG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TATCTGCTTACTTTTC	alt_6076_new	35	59	45	34	46	40	60	37	44	36
GCGCCTTAGGACAATG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TGATACTTCAGTTAAC	alt_6076_new	30	29	46	34	38	33	32	38	43	24
ACATGCTCTGACGTTC	alt_6076_new	175	193	214	154	159	150	234	163	233	145
CGACCCGCGGAAAGGG	alt_6076_new	3	11	7	6	4	8	6	8	12	3
GCCTCTACCGAGATAA	alt_6076_new	50	63	74	54	48	43	62	43	68	49
GCCTATGCCGACGCTC	alt_6076_new	5	21	5	9	17	4	30	6	23	2
AAACTTGTTGTCACGG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TCCTGAAGCCCAATAA	alt_6076_new	61	100	57	67	86	42	87	55	75	56
CCCGTGCCATACTACC	alt_6076_new	4	1	7	2	1	0	1	3	4	5
CAGGGTGTGCGGCCAT	alt_6076_new	67	62	90	73	55	53	72	54	55	53
GTGCTAATAGCGGCCT	alt_6076_new	123	138	136	124	117	95	108	121	146	136
TTGAGTGAAACGGAGT	alt_6076_new	10	11	7	10	14	8	13	15	11	10
CGAGGTTCCCCTTCCT	alt_6076_new	25	36	30	29	41	29	41	35	40	37
TTTGGCGACCGTGCGT	alt_6076_new	5	13	3	6	19	6	16	5	12	3
GCGTATGGGTTTAAGG	alt_6076_new	6	9	9	4	10	12	11	9	7	6
TGTGTATATCCATATT	alt_6076_new	97	115	120	102	112	71	93	83	110	91
TTACTTATACTTAGTG	alt_6076_new	0	0	0	0	0	0	0	0	0	0
ACCGCATAAATCTTTT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
ATTGTATTCGCCTAAC	alt_6076_new	59	52	83	63	54	52	55	52	48	44
TCCAACTCTACCAGGC	alt_6076_new	13	29	18	16	30	7	20	18	32	13
CGTTCTTTCCATGTCA	alt_6076_new	45	38	58	34	51	35	35	40	53	32
GAACCTTAGATGGCAA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
CCAGTTTTTTATAAAA	alt_6076_new	4	29	4	4	35	3	51	3	37	4
GGTCCTGATCTATTTT	alt_6076_new	18	11	24	23	16	13	9	12	12	20
GTGGTATTGTTCACGA	alt_6076_new	16	23	19	22	22	24	32	9	27	20
ACTCTCTTATTGTTTT	alt_6076_new	7	7	12	14	9	13	7	6	11	14
GGTATTAATAGTATAA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GCAACGCCTATGTCTC	alt_6076_new	6	5	11	8	9	1	7	2	3	4
CGTTGCGCGTATTTGT	alt_6076_new	38	51	62	45	56	38	55	49	48	43
ACGTTAGGACCATTTT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTTAGTCTGGT	alt_6076_new	19	11	21	13	15	11	16	9	14	6
AAGTGGATTGAATCTA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GTAACTTTCAATTCCA	alt_6076_new	18	15	27	12	13	17	22	23	24	14
GTCCGGTGACATTCGG	alt_6076_new	38	49	57	51	56	40	50	52	44	42
GCCTTGGCCAAGTTTC	alt_6076_new	24	31	30	30	27	19	35	42	24	7
CCAGGGTCTACTTGAA	alt_6076_new	35	56	56	29	43	31	64	35	64	27
CCCCCAACTACCGTGT	alt_6076_new	6	14	8	21	6	14	11	8	10	4
GGACCACTCGTTTCAA	alt_6076_new	37	45	50	27	38	32	54	38	48	51
TTTATCGTGTCTTGTA	alt_6076_new	118	126	129	110	144	115	120	125	129	123
AACGCACAACTTTTAT	alt_6076_new	32	32	54	62	48	43	45	55	51	28
GGCTCTCAGTGGTCGC	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TTTCCTTCTGAGTGCT	alt_6076_new	8	5	11	5	3	4	5	4	7	3
GTTTAGACCGGTCCTG	alt_6076_new	28	39	31	36	26	39	24	26	45	32
CGCGTGCAACAATCTA	alt_6076_new	0	0	0	0	0	0	0	0	0	0
GTGCTGAATGAAACCA	alt_6076_new	36	44	45	32	37	38	33	38	46	34
ACGCCGTTCAACGCTT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
CAGTCAATTGATTTAT	alt_6076_new	0	0	0	0	0	0	0	0	0	0
TAGCTTGTGGCTTCGT	alt_6076_new	13	18	17	10	26	18	32	10	35	16
CAGCTTGGCACGCCTA	alt_2112_upstream	66	92	71	66	80	55	100	42	128	52
GGGGCGTAAGTACGTT	alt_2112_upstream	34	39	53	41	68	31	55	56	47	41
GGTTAAGGTCTTGTAA	alt_2112_upstream	26	31	25	27	16	16	22	27	19	18
CGTGCATACGTGAGGT	alt_2112_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGTGCGCACAAAG	alt_2112_upstream	15	28	9	15	35	4	30	10	28	5
TCTTAACCAGCCAGCG	alt_2112_upstream	6	9	7	13	7	13	13	11	9	5
TCATGAAATGGCGTCA	alt_2112_upstream	16	27	27	20	28	10	22	17	22	13
GTTTATATGGCCTCCG	alt_2112_upstream	5	12	18	12	21	11	15	11	17	14
CGCCCCCAAGCAATTT	alt_2112_upstream	59	71	69	63	51	53	80	53	79	54
TCCCTCTCGGACGCAT	alt_2112_upstream	10	25	25	18	15	13	28	16	18	9
TGTGCTTTAAGACTCA	alt_2112_upstream	0	0	0	0	0	0	0	0	0	0
CTAATCCCGTAGAGGA	alt_2112_upstream	30	38	34	28	50	35	45	24	41	26
TACGTCTTAAAAGGCT	alt_2112_upstream	48	72	60	57	78	34	66	40	66	39
CTCAGTTTTACCTGGC	alt_2112_upstream	77	138	80	54	135	72	161	65	135	64
CCTAACTGCCACGCCT	alt_2112_upstream	8	35	9	15	38	10	38	8	44	11
GGCATCGTTTGCTGTA	alt_2112_upstream	0	0	0	0	0	0	0	0	0	0
ACATTAGAAAAGCGTT	alt_2112_upstream	85	127	82	69	85	68	77	61	85	71
AACTTCCAATCTGCTC	alt_2112_upstream	11	15	16	12	20	4	17	16	5	8
GTTGAGTGAATGACAT	alt_2112_upstream	7	12	5	6	2	3	11	4	12	3
CTGAGAATTAGGCTTG	alt_2112_upstream	26	22	35	25	24	21	23	21	33	15
TGCCTATCCTCATTAT	alt_2112_upstream	0	0	0	0	0	0	0	0	0	0
CGCATTAAATCCCCAC	alt_2112_upstream	18	29	15	17	31	22	16	20	24	18
GATTAACCTAGTAAAT	alt_2112_upstream	59	81	55	39	65	57	78	46	90	37
CGCGTCGTGGAACCGT	alt_2112_upstream	0	0	0	0	0	0	0	0	0	0
TACCTTGTGATGGGCC	alt_2112_upstream	0	0	0	0	0	0	0	0	0	0
CGATACACGTATATAT	alt_2112_upstream	37	42	44	49	41	42	60	42	55	37
TCCTAGGGCGCGTGGA	alt_2112_upstream	0	0	0	1	3	0	1	1	3	0
AAGGGTGTACAGTACT	alt_2112_upstream	51	66	56	43	70	47	60	47	81	46
TCTTGACATCTTGACT	alt_2112_upstream	0	0	0	0	0	0	0	0	0	0
CATTATGTGGTCACCA	alt_2112_upstream	24	49	33	31	39	45	39	33	49	34
CGACCTGGGAACCGCA	alt_2112_upstream	25	32	33	38	33	37	24	23	37	34
GTAGACCCGTTTGGCC	ref_1700_upstream	31	23	35	21	30	26	28	19	30	19
ACGAGGGCCGAGCGTC	ref_1700_upstream	116	86	153	116	104	105	83	109	102	108
TTATATTTGTTTTTGT	ref_1700_upstream	47	34	54	47	37	31	40	40	32	37
AATGCCATGCGCCCAT	ref_1700_upstream	2	0	7	6	4	6	3	4	8	8
GTTATTAGATGTAGAG	ref_1700_upstream	20	23	19	14	21	21	18	12	24	10
AGTACTTTCGATTATC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGGTATTACCGCT	ref_1700_upstream	72	63	77	68	65	69	69	68	76	65
TCTATTTTCCCGATCT	ref_1700_upstream	48	41	62	43	55	43	43	38	41	44
TTCATATCAGCACGCC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTCAGAAGGCAAT	ref_1700_upstream	65	65	63	56	67	64	69	57	69	66
GCGTTTTAGCATTACT	ref_1700_upstream	15	10	13	27	10	11	5	8	15	5
ATAGGTAATGTGTTGC	alt_1700_upstream	5	8	10	12	12	5	17	6	15	12
CTGTGTTACGTATCTT	ref_1700_upstream	36	48	44	39	37	49	34	37	47	29
GATTCAGGGCGCATCC	ref_1700_upstream	47	25	54	41	52	34	53	41	56	47
TACTACGAAGTATTCT	ref_1700_upstream	33	38	59	48	24	39	53	32	62	39
CTTATAAACGTCGCCC	ref_1700_upstream	34	24	34	37	38	27	32	33	23	35
TTTTTGACCGTTTTTT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGTTATCCATACCTCT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTTACCGTTTCCTGAC	ref_1700_upstream	19	32	31	26	25	15	24	27	32	12
CGATTATTATAAGTGG	ref_1700_upstream	23	26	23	29	23	19	35	20	24	20
GTGTGACGTCGGTATC	ref_1700_upstream	17	15	13	19	10	16	13	7	12	13
TGTTACCTCGAGGTTT	ref_1700_upstream	70	69	72	78	61	88	48	59	51	45
GGTGGACAAGATTCTT	ref_1700_upstream	4	1	3	6	2	3	4	0	2	2
CTCGCCTAATTTGCAA	ref_1700_upstream	21	24	28	20	29	16	27	16	33	14
ACCTTTCTCAGTTTCG	ref_1700_upstream	6	8	5	7	7	7	1	7	5	4
AGATTGCTTTTCACTT	ref_1700_upstream	32	49	42	41	52	50	44	32	55	28
ACCTGTATAAATATTT	ref_1700_upstream	9	8	11	11	5	5	12	9	8	7
AAGGTGCTGCTACGGT	ref_1700_upstream	50	47	86	56	52	52	57	57	47	44
CTTTGAGGATTCACGG	ref_1700_upstream	38	23	34	39	34	27	45	29	41	32
TTCCGCTCTTTCGCAC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTGTCTAAATCC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCGTAGTCTCTAA	ref_1700_upstream	12	8	11	11	10	15	12	11	27	15
TGCACCGTTGGGCTTT	ref_1700_upstream	48	56	64	58	53	32	38	61	58	51
GTTCTGCGCTAGAGTC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGGCATCTGCGGGCAC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTGGCAATTTTTG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCGAGCGGGCCAT	alt_1700_upstream	170	109	230	180	124	195	118	150	135	175
TGGGTGCGTAAAGCCT	ref_1700_upstream	76	51	69	68	46	77	38	64	55	62
AATCCTTTGGCAGTGT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
AGAGGAATCCTCCCTC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCGTGTAATTTTG	ref_1700_upstream	9	10	10	10	12	18	15	6	20	16
GGTCATAGGTCTCTTC	ref_1700_upstream	9	7	8	6	4	4	7	3	8	9
CCGCGCCGCTATATTA	alt_1700_upstream	21	144	33	35	132	18	165	29	140	18
ACTTACATCGGTATTC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGCACGGCTTGTGCGT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCCAACTCTTTAA	ref_1700_upstream	151	163	210	144	149	126	181	138	172	147
AGATGTCATGTGGAAC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CAAAACGCTCACAGAG	ref_1700_upstream	6	1	1	1	5	2	1	1	8	4
ATCAGCTTCGGCTTCG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTTACTCTCCAAA	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGCATCCAACGTG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTACCCTCTTGCATTT	alt_1700_upstream	3	1	5	1	1	0	1	4	0	4
ACTCTGAATACTTAGA	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
ACGGCTCGTACGTCAT	ref_1700_upstream	0	0	1	0	0	0	3	1	0	0
GAGGATGCGGATACTC	ref_1700_upstream	31	29	53	26	26	37	39	36	36	22
TTTTTATACCCGACCT	ref_1700_upstream	17	4	6	18	22	21	22	14	23	7
CCCTGCCGGGGTGTTT	ref_1700_upstream	18	12	20	17	14	11	15	5	16	15
AGTGCTCGTGTTTCAT	ref_1700_upstream	20	28	37	33	34	33	26	44	41	36
GGTGACGATGGTTACA	ref_1700_upstream	0	13	4	8	19	3	14	5	20	2
GGCTCCTGTGTGTCAC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTCGCTTTCACAC	alt_1700_upstream	47	45	54	58	76	50	76	60	67	48
ACGGTCAGCTAGCTTC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCCATCAGATAAG	ref_1700_upstream	137	127	177	142	148	124	146	126	149	118
CTATCTAGAACAGTTG	alt_1013_missing	0	0	0	0	0	0	0	0	0	0
CAGTCAATTACCTGGG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTGAATCTTGCTACTG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGATACTATCAAGACC	ref_1700_upstream	41	40	57	66	49	62	62	60	69	53
GGCCCCAAACAAAAAG	ref_1700_upstream	6	6	9	11	4	15	9	10	8	10
CGTGTATGAAAGTAGA	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTTTGATTCGCGG	ref_1700_upstream	70	47	70	47	71	55	52	54	43	46
AGGTCATCCCGTGACA	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGCTCTAGGGATA	alt_1700_upstream	145	113	193	142	102	129	107	158	113	129
ACCTTTCCTTTTGCCC	ref_1700_upstream	14	11	15	13	14	13	14	8	14	10
GTGTTGATCATGTGTA	ref_1700_upstream	54	37	52	46	43	34	33	44	35	35
ACTCTTTACCTGCGTA	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTTGGACAGTTCC	ref_1700_upstream	0	3	0	0	4	0	5	1	6	0
CGGGTAGGGCATGTGA	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGCTTCATACATC	ref_1700_upstream	48	60	84	66	55	80	63	53	66	52
TAGGCTTCATGGCGTG	alt_1700_upstream	107	80	124	122	114	90	83	108	94	98
CTATCTCCCAGCCGGT	ref_1700_upstream	3	3	10	4	1	6	1	1	4	3
TTGTACGTGCAACCAG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGTTCGTTATTGT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGGAACGCCTTTCTGG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGCTACTCGTCATGTC	ref_1700_upstream	1	0	1	0	0	0	5	1	1	0
TCGCGATGTGTGCGCG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGCTTGTTCCTCG	ref_1700_upstream	1	2	1	1	3	2	5	0	3	3
TTCATTCATCAGTATC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TACAGCTTGTGTCGGT	ref_1700_upstream	217	252	288	228	253	201	286	199	274	185
CCGGTTCCCACACTGT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGGACGGGTTCGACGT	ref_1700_upstream	46	39	52	33	49	34	40	33	36	47
TCGTTTCTAGAACAGT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GGGAACAATCACCGAC	ref_1700_upstream	93	76	104	113	77	84	89	111	90	97
AATCGGGTACCTAAAT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGAACCCGGTGGGTGT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCTAAGTTAATCT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGGGGTTCTAACAGTT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCGTACTCCCGCT	ref_1700_upstream	21	10	16	8	20	9	13	17	22	11
TAGTTTACTCCTGCAA	alt_1700_upstream	17	22	18	18	32	22	23	13	17	19
ATTATGGTTAACCACT	ref_1700_upstream	3	1	9	4	2	6	4	3	8	1
CCAGACGCCTCGGTAT	ref_1700_upstream	8	39	18	31	33	27	26	18	32	18
CCCGAATGCATGTCTG	ref_1700_upstream	16	10	11	17	11	9	18	15	17	6
CGGAACCCTCGCACGG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TCACGACCAGCTGGGT	ref_1700_upstream	16	13	17	15	9	9	12	10	10	6
GTTCGCTGGTTGCCTT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CATGCTCTAAGATTTG	ref_1700_upstream	13	22	21	24	17	19	21	26	24	26
CTCTTATAGCCCTATT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCCTCTCTTCATC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTACCAATCCCAT	ref_1700_upstream	12	14	18	19	9	10	7	9	11	17
GTTGCGCCCCGAGCTG	ref_1700_upstream	44	44	63	41	33	42	36	37	36	55
TGTTTACCGGCAAGTC	ref_1700_upstream	12	21	30	42	21	25	17	23	25	30
GCAGTACCGGGGCGGC	ref_1700_upstream	60	56	71	56	56	60	44	61	68	58
TGGAAGAGTTTTACGA	ref_1700_upstream	18	20	28	16	25	22	21	16	22	14
AAACCAGGCCGGATAG	ref_1700_upstream	73	85	98	73	74	61	66	54	77	74
GCATGCTTATAGATAC	ref_1700_upstream	53	71	56	52	58	49	58	65	80	53
CTCTGGTGATCTTATG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATAGCCTTTGAT	ref_1700_upstream	33	37	34	25	22	38	37	36	51	35
CTACACACCAAACGCA	alt_1700_upstream	70	84	93	80	79	61	82	62	71	59
TAGATGTAATGGCGCC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TCTTACCCTGAATTTG	ref_1700_upstream	43	47	58	35	38	42	39	39	45	35
GGTTTGCCTAATAACC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CACTGTTACCTAGAAT	ref_1700_upstream	4	3	7	3	5	0	4	5	7	4
GCCCTGGGCTGTGATA	ref_1700_upstream	16	24	29	27	26	18	33	23	28	23
TTTTGCGTGTCACTGG	ref_1700_upstream	8	11	5	10	10	2	18	9	15	16
CATTTCTTTGGCTGTT	ref_1700_upstream	32	40	50	39	45	34	50	26	46	32
GTCCTTAGTCCTAGGT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TCACGTCCTCTGGGTT	ref_1700_upstream	46	39	36	44	49	29	42	44	57	27
ATACGCTTTTAATTTT	ref_1700_upstream	22	19	40	23	25	25	28	25	17	17
TCTGGTTTTCAACTTT	ref_1700_upstream	68	63	79	69	53	46	67	45	67	56
CCGGGCCCAAATTTCC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTACCAAACGCCC	ref_1700_upstream	8	11	5	7	11	10	6	7	10	11
CATTTGTCGTCTCATC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTGACTTCCCCT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGATGAACTGGTC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
ATATGCGTAGGCTAGG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GACAGAGCGTTATGAA	ref_1700_upstream	49	33	45	32	29	26	40	37	33	29
CTCTATCACGTGTATG	ref_1700_upstream	15	17	25	19	22	13	24	23	14	15
TAGAGGTTGACAACTG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGGATCAACTGCT	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TATTGGGCTGACTTGG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTTATATATGCCCCCG	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGACTATTCTTC	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
TCCACGGCGGGATCGT	ref_1700_upstream	72	68	103	71	67	77	74	56	81	75
TGACCCTAGCCTGTGC	ref_1700_upstream	1	1	2	2	3	2	0	1	2	3
GGCGCTCCCGTTTCGG	ref_1700_upstream	13	19	21	11	16	8	10	12	21	9
TATGAACGCCGCGGCG	ref_1700_upstream	22	18	21	20	21	13	18	14	26	17
CCGGCGCGCTGCAAGT	ref_1700_upstream	3	9	8	6	5	9	3	5	5	6
ATTCATGCATCCAATA	ref_1700_upstream	0	0	1	1	2	0	0	2	0	0
CTTGACGCGAGCGGCT	ref_1700_upstream	80	57	64	69	71	49	68	50	54	60
TGCTGAGAAGGGCATA	ref_1700_upstream	22	18	28	21	26	27	18	29	16	19
CTGTCTTGGGCGACCA	ref_1700_upstream	2	5	8	9	3	7	3	6	7	3
TGATCGATGGTACAAA	alt_1700_upstream	95	78	125	88	91	107	89	103	73	108
GTTGGGTAGTTATGGT	ref_1700_upstream	50	41	37	38	22	33	28	31	25	38
TCTACTTGGTCCGAGC	ref_1700_upstream	11	20	12	21	14	19	10	13	18	13
ATATCTTTTTATTTAG	ref_1700_upstream	39	39	54	54	38	45	41	35	42	32
AAAGAGAGAGCTCGTA	ref_1700_upstream	17	15	15	12	12	20	20	11	16	11
TCTACTTGTTCATGTA	ref_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTCTTTTCGGCGA	ref_1700_upstream	56	50	78	63	33	44	38	49	64	50
TTTATCGGGAATCACG	alt_314_reverse	2	2	2	2	2	0	0	1	3	3
TAGGGTATGTCGCCCC	alt_314_reverse	8	3	7	3	8	5	6	4	4	3
GCTAAATGTTTATACT	alt_314_reverse	35	45	39	35	45	30	67	31	63	28
GCCCATTCAGCAGAAC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGATGATGCCATC	alt_314_reverse	6	11	13	8	22	8	10	4	25	8
AAATCAAGGCGCAGAG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGGCAATCACATG	alt_314_reverse	8	4	5	6	6	2	7	1	9	2
CCCAATTTTGCCGTTT	alt_314_reverse	10	2	7	5	2	3	8	4	7	2
AGATTCTCTTGATTTT	alt_314_reverse	18	32	22	13	19	25	34	24	25	19
GATTACTCAAAGTTAA	alt_314_reverse	7	9	12	10	9	8	9	3	9	9
TGTTGTCGAGCTAGTT	alt_314_reverse	18	24	15	13	21	12	22	9	22	10
TCTCAGCATCTTCATA	alt_314_reverse	14	18	10	9	18	8	15	7	18	11
TTGGGGGAGGATCTGC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGCGCCACACTCT	alt_314_reverse	8	12	5	1	11	2	8	11	9	11
GTATTATGTGTCTGGG	alt_314_reverse	9	29	20	14	16	6	21	15	20	4
GAGGTCTGGTCATACA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAATCAATCTGCC	alt_314_reverse	2	7	8	13	4	9	7	6	6	4
ATAAGACCTGTGGGTT	alt_314_reverse	16	23	8	11	12	13	27	15	14	11
CGGGACTGTATGTAAG	alt_314_reverse	6	50	12	5	40	11	47	9	31	7
GCGACTCGGTCTTATG	alt_314_reverse	10	27	17	13	26	11	30	13	23	27
GATATGGCCATTCACC	alt_314_reverse	0	5	7	3	2	2	10	7	8	4
TATTCTCCCGCACTTC	alt_314_reverse	7	11	12	7	16	13	23	8	13	13
CACGCCATGTCGCCAC	alt_314_reverse	9	13	5	11	10	7	9	6	19	8
GGAGTACGTAGATAGT	alt_314_reverse	34	41	30	24	27	33	36	38	41	16
AATGTGTTCTCTCATG	alt_314_reverse	16	40	11	16	14	13	13	11	16	9
CTTGATTTCTGCGCCG	alt_314_reverse	6	8	5	0	5	3	6	6	4	1
CCCAGTTGTGCAAGTA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TGATGCATTTAGCTTG	alt_314_reverse	12	7	9	7	11	9	11	2	9	2
TTGTCCCGGAGGGATT	alt_314_reverse	17	31	30	19	31	15	32	16	22	15
AATTTTTTCTATTCGG	alt_314_reverse	3	6	1	6	6	0	3	2	2	0
CGGAAGACTATCTAAT	alt_314_reverse	13	33	4	12	26	6	25	4	27	15
TCTTTTTCTGTGTTTG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TTACATAATTCGTCAA	alt_314_reverse	5	8	12	3	20	7	16	10	11	5
GATTGTTCTTGGGTAT	alt_314_reverse	6	17	10	5	11	4	14	5	15	7
CCGTTCTCTTCCCTAG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
GCCACCTAGCAAACCT	alt_314_reverse	11	10	17	7	15	4	19	4	22	7
TCTAGCGTTGACTCTG	alt_314_reverse	14	47	24	20	53	22	46	20	35	16
TCCGTTGGTGTATAGA	alt_314_reverse	27	36	22	30	49	23	47	31	53	30
TACGTCATGGCATTGT	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TATCGGGTTTCTTTCG	alt_314_reverse	28	41	44	28	58	25	38	34	50	37
GTATTCTACCTGATGC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CGTACTTGGACTCGTT	alt_314_reverse	20	25	14	17	32	21	26	17	26	13
CGCCGTTTTATCATCA	alt_314_reverse	7	17	8	6	18	12	9	9	16	6
ATCACAGCACGCCTCA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
GGTGAATGGCTCAAGG	alt_314_reverse	24	27	15	21	18	27	31	19	30	17
TGTTAACCGCTTGAGT	alt_314_reverse	3	14	5	4	9	5	8	2	13	8
GTCTAGCGAATTCGGT	alt_314_reverse	28	48	55	23	48	28	47	29	45	37
CCTGTAAGTACTGAAA	alt_314_reverse	3	4	6	4	7	6	9	8	2	4
ACCACTGCCTTACATC	alt_314_reverse	18	15	14	18	12	12	23	13	22	10
AATGACTGGCGGTATG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGGTTGCTTCCGG	alt_314_reverse	12	22	12	11	19	6	17	7	9	10
ATTTTTCAGCGGTACC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
AAAAAGCTTAGTTTCG	alt_314_reverse	16	30	17	29	33	13	32	23	31	14
GATTTAGAGATTTCAA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
GATCTGTGGGCGCAGC	alt_314_reverse	7	8	8	8	5	4	11	3	6	2
TCCTGGTACCATTTAC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCAAATGCGCTT	alt_314_reverse	22	38	36	23	34	26	35	29	41	23
CACCATGTTAACACGA	alt_314_reverse	11	13	13	9	17	9	17	10	21	11
CTATGATGGTGTTGTC	alt_314_reverse	22	31	20	16	34	31	56	19	31	20
CTGCGGTTTCTTTCGC	alt_314_reverse	9	16	18	6	10	4	12	8	9	12
TTATAACGAGTTGCTA	alt_314_reverse	19	24	25	18	28	17	32	13	24	27
GCTTTTATAAATCAAT	alt_314_reverse	48	42	52	28	73	43	56	36	69	30
TTTATTTTTGCCTGGG	alt_314_reverse	40	43	32	34	42	33	37	42	50	23
ATTTGCTTCCAATGTT	alt_314_reverse	15	34	21	16	18	23	14	16	27	9
ACGGTCACCGGGCGGT	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
ATGACGCCGGCTAATC	alt_314_reverse	16	17	14	17	14	11	26	11	33	14
GTAACCCTACGATAGT	alt_314_reverse	18	27	25	15	43	16	44	21	34	14
CCGGTCGGACTAGCGA	alt_314_reverse	4	47	15	7	32	9	50	5	54	8
AAAGAAGGATCGTCCG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
GTTATTTCACCTCTCT	alt_314_reverse	40	34	40	28	43	36	40	32	32	32
TTGGGTTGGTACACAA	alt_314_reverse	6	6	5	8	3	6	7	3	3	5
CGATTAATAAAGCTTC	alt_314_reverse	14	10	14	13	15	13	11	7	17	6
CGAAATACAGGATAGA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CTATCATTGCGCGGGT	alt_314_reverse	40	66	40	30	52	36	49	32	73	22
ATACGGTGTCCCTCAT	alt_314_reverse	5	7	0	4	4	2	4	1	4	0
GGTCTAAGGACAGACC	alt_314_reverse	22	47	50	28	56	23	59	39	55	36
TTAGGGGCTTAAAGCA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CACCTCTAGGCTCACA	alt_314_reverse	53	86	55	47	101	35	92	53	94	47
TTGATGAGGTGAAGCT	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
ATTATAAGACATGGCT	alt_314_reverse	20	32	26	34	39	25	28	26	36	22
GTTGGTCGCGATAACC	alt_314_reverse	40	72	66	50	84	47	67	45	79	36
AAGACTGTTCTCCTCG	alt_314_reverse	16	15	21	6	29	9	25	8	22	9
GCCTGATCAATTCGCA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
AGCAGGCTAAACTGTC	alt_314_reverse	17	14	16	5	26	9	15	6	8	5
AGCCTTCAATCCAGTT	alt_314_reverse	34	57	50	45	53	38	48	32	48	31
TATCTGACCCAAGGTC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGCCGAGCATGAT	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCAGGAGTAATCG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGGGTAAGGTTTA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CCAGATTTTGGCCTCG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
ATAAACTTTCTCTACA	alt_314_reverse	23	44	26	22	35	21	27	18	39	14
GAGTTGCACCAGTTAC	alt_314_reverse	24	33	29	18	32	24	50	18	49	28
GATATTCCGCTTTCCC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
AAATTGACACTACCTG	alt_314_reverse	27	46	21	26	31	15	42	24	45	24
GTCAGTGGCTGCTGAG	alt_314_reverse	126	186	138	127	182	123	180	107	171	116
CGCGGGAGCTACTTTT	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TATTATTGGGTTTATA	alt_314_reverse	57	90	65	62	80	53	103	56	89	46
TAAACACCAAGGTTAA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCGCTGGTCTTGA	alt_314_reverse	21	19	27	13	27	17	23	12	26	14
ATGATGTCTGAATGTA	alt_314_reverse	41	28	22	16	23	26	40	28	39	28
TCGTGTAAAAATGGTG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TGAATTCGCGCCCTCC	alt_314_reverse	5	12	10	6	13	3	13	5	9	8
CGCGGGAACTGCGAAC	alt_314_reverse	26	24	10	14	21	14	27	28	37	17
CAATACAGAATTTTTG	alt_314_reverse	35	46	29	29	64	30	43	21	47	41
GGAACGTCTCGGCGTG	alt_314_reverse	5	13	3	6	5	4	6	2	10	6
GCTTTATCTTTATGTT	alt_314_reverse	5	13	9	8	8	8	19	4	13	4
GTCTGAAAAACAACAC	alt_314_reverse	19	20	30	17	15	23	35	23	26	17
ACCGTAATATCCAGGA	alt_314_reverse	12	27	26	15	29	18	30	21	33	12
GGCCTGCGGCTCTAAT	alt_314_reverse	29	48	54	41	54	20	47	27	44	34
TCTTTGAGCATGACGT	alt_314_reverse	0	1	3	1	0	0	0	1	1	0
GCACTTACCTATTAAG	alt_314_reverse	0	13	3	0	9	0	20	3	15	0
AAGATTATGTGACGGA	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CGTTATGGCAGTCTGT	alt_314_reverse	8	3	5	5	8	6	5	8	7	5
GGGTATGGCTGAGGGT	alt_314_reverse	14	22	25	8	20	23	21	9	17	15
TCACTCATTAATTCGC	alt_314_reverse	15	36	22	24	38	14	38	22	22	21
TAGAGGTCACTGTACC	alt_314_reverse	6	23	13	9	23	16	21	11	29	10
CTCGGATATAGGTGTC	alt_314_reverse	17	24	19	14	34	22	39	14	28	15
GAATTTCCGGATTCAA	alt_314_reverse	23	19	7	13	27	17	21	16	24	13
GTTTTCACGAGTCAGG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAACGTGTCGATG	alt_314_reverse	45	44	45	32	59	21	53	39	67	29
GGTGTTAGTCGGAATC	alt_314_reverse	95	142	123	94	171	93	156	81	139	94
TGCCTCCACTTAGCAG	alt_314_reverse	10	15	12	9	20	17	17	3	21	5
CTTTTAGGTGTCGCAC	alt_314_reverse	18	30	14	16	27	12	27	23	37	20
CTCTCTTTCGTTCCGA	alt_314_reverse	16	9	21	14	21	22	21	12	18	11
CGCCGCGTGTTATTTT	alt_314_reverse	13	13	7	7	14	5	9	2	14	11
AGTCACATCTTGTGGG	alt_314_reverse	6	12	5	6	15	2	9	3	11	6
CTCTTTGCCTACTGTC	alt_314_reverse	10	18	11	15	13	3	13	16	22	5
TCCGTTGTATCTGATA	alt_314_reverse	6	21	10	8	7	13	15	9	23	9
CCCTATGCGTTTGCCC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGGCAGAGATTGC	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
AAAAAACCATGGTCTA	alt_314_reverse	14	15	16	10	18	16	24	11	27	14
GCTACGGAATCGTCAC	alt_314_reverse	5	7	9	14	13	4	7	0	6	9
GACCCCGTATATTTCT	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCCATCCTCCGCT	alt_314_reverse	13	19	21	16	25	7	30	13	34	6
CAGTACAAACATTGAC	alt_314_reverse	168	354	168	184	320	157	335	144	350	150
GGTGGACGGATACGTG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTGCCCGGACGTG	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
CCATGCGTGGTTTTCT	alt_314_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAGCGTCACGAAC	alt_314_reverse	4	4	1	4	3	6	7	4	3	6
CTCGTCCGCTCTGCAA	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TGTCCGGACTCAGCTG	ref_5771_new	29	35	37	28	27	32	29	32	37	21
AGACTCAACCTTCAAT	ref_5771_new	16	28	19	16	27	11	23	16	26	11
CCAGACCTTCCAACCC	alt_5771_new	63	119	108	107	132	70	133	92	104	74
TTCGCTCGAGTTAGGG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CGGAATTCGGTGCCAT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CAGCACACGCAGGACG	ref_5771_new	0	0	0	0	0	0	0	0	1	0
CTTTCGGGTAAGCAGC	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CACGGCACGATATCGT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TGGTTGCTTGTTTTCT	ref_5771_new	76	68	84	71	102	67	117	75	115	85
AGGTGGCGCCTAGTAC	ref_5771_new	48	125	52	38	86	27	89	33	95	47
GACTTTTGTACCAGCC	ref_5771_new	0	0	0	0	0	0	0	0	0	0
ACTTTGGGTAGCCATA	ref_5771_new	13	16	14	7	19	16	20	14	19	19
TGAAGAATGCGGCAAT	ref_5771_new	34	42	30	30	45	21	61	22	36	29
TCGTTTATTTCTTCCG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TATGAACAAATGTCAT	ref_5771_new	19	22	18	15	20	17	24	11	23	17
TGGTAGAGTGGTATCG	ref_5771_new	26	22	29	34	28	26	35	38	27	29
GCTGTGAGCTTGCCCC	ref_5771_new	6	19	8	7	9	4	9	9	17	3
ACGCATCGGTCAGCTG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CCGGCGTCTCCGTCTT	ref_5771_new	34	47	52	38	62	39	55	25	60	44
TGAAATGGCCTTTCCG	ref_5771_new	15	25	16	18	32	18	18	14	37	25
ACGATGCTTGGAACTG	ref_5771_new	57	98	58	65	95	65	86	40	89	53
GCAATAAGTAGCAGAT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
ACATGTATGAACCTTC	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CGCTGTTCAGTTGCAT	ref_5771_new	8	19	16	12	22	9	20	7	10	6
CGTGACATCGTGAGGT	ref_5771_new	62	77	102	71	86	65	70	62	78	52
TCATGCTATCTGTATT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TCTTTGAACAGCGTGC	ref_5771_new	9	23	14	14	22	15	11	12	10	13
TTTCCGGACATCCTGG	ref_5771_new	23	40	51	26	45	27	34	25	38	25
TACCCTCATCTTCGTG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
GTTTGTCGCGTAAGTT	ref_5771_new	79	104	84	76	93	86	99	57	110	72
GCTCTTGAGCCGTTCG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TTCCTGGACGGTTTAT	alt_5771_new	44	81	68	66	102	59	87	50	85	67
ACCGTGTCTGTACTGT	ref_5771_new	18	13	19	6	10	9	18	10	10	10
GTTTCATCAGCATCAG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
GCAAGAGACAATCAGC	ref_5771_new	0	0	0	0	0	0	0	0	0	0
ATCTGGTTATATAGTG	ref_5771_new	20	33	36	30	44	21	46	27	51	21
AATAACTCGTAGAGTC	ref_5771_new	6	10	14	5	17	8	9	6	7	11
GGTTTGAATGTTTAGA	ref_5771_new	51	83	65	65	76	47	100	62	102	50
CCTAAGGGTTTATCTA	ref_5771_new	32	30	33	39	33	18	35	22	53	25
GGGATGGATAAACGCA	ref_5771_new	41	59	64	56	57	46	68	39	64	47
GACAGCCTCCATTCTT	ref_5771_new	21	16	28	14	27	22	16	17	26	22
CTCCTTCCTTGGGATC	ref_5771_new	7	1	3	4	3	3	4	1	1	2
CCGTGAAGTGTAGCCT	ref_5771_new	5	17	3	1	16	5	15	4	12	2
TAGCGTATTAGTAATC	ref_5771_new	9	10	12	16	14	7	24	7	17	11
TCATACCACTTTATCC	ref_5771_new	83	155	111	102	129	82	153	84	154	84
CGCCACTCATCTGATA	ref_5771_new	8	15	6	2	14	6	7	7	12	7
TTTCTGCATCTCTTAC	ref_5771_new	37	49	59	24	54	24	71	43	53	29
GGTACGCGACGCCCGT	ref_5771_new	24	23	23	19	31	21	33	10	30	14
TGTGATGTTGGCTGTT	ref_5771_new	5	5	9	4	7	2	12	1	4	4
GCAGAGGGGTGCCAGG	ref_5771_new	33	40	41	46	30	33	37	33	48	27
ATCTCGTCTGTGCATG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CGCTTTGCCTAATACA	ref_5771_new	36	41	45	34	41	20	41	22	47	17
GCCTTGTTATACCTTT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
GTGCATTGTCTTATCC	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TCGCCCATCGCGTCAT	ref_5771_new	28	34	32	20	29	20	35	22	31	17
GTGGTGCAACTGGGCT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CGTAACTCTCCTACTT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
ACGACGTGGACGGAAC	ref_5771_new	8	13	13	9	21	6	10	7	18	8
TCACCCAATGCTACGT	ref_5771_new	7	11	17	7	9	10	13	16	15	8
CTACATGGTCTTTGTT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
GTGGTACTTTTGGGTA	ref_5771_new	21	34	27	25	38	38	38	26	48	26
CATGATGGTGCTCATG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TAGGTATATATTTTGA	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TAGCCGAGAATTATGG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CCAGCCCTTCCAACCC	ref_5771_new	0	0	0	0	0	0	0	0	0	0
AATGTTTACGGATCAG	ref_5771_new	22	44	37	24	31	36	39	36	32	21
TCTACACAGCTTCAGG	ref_5771_new	21	18	30	14	25	16	17	8	20	15
GTTTTCTCATGTACGG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TTATAGCATCGCTTGG	ref_5771_new	48	40	29	25	36	32	33	26	42	22
GACAAGGTATCCGAGC	ref_5771_new	18	17	14	17	18	19	13	11	21	14
ATATGGCGTTCAGGCG	ref_5771_new	36	40	63	38	53	46	48	39	49	31
TTTCCTAGTGGTACCT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
GGTTTGGGTAGGTAGA	ref_5771_new	33	30	46	33	42	31	44	26	41	31
GTGATCTGATGGTTCT	ref_5771_new	14	24	17	5	16	10	14	8	16	15
CGCCTTTTTCGCTGGC	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TCACACTCGTTAAGGA	ref_5771_new	0	0	0	0	0	0	0	0	0	0
AGTATATAATCCATAT	ref_5771_new	18	18	24	17	32	23	22	18	20	23
CGAGAGCTGTCGATAC	ref_5771_new	5	13	3	2	7	8	4	5	8	1
TTTATCACCTCTTTCT	ref_5771_new	11	22	21	20	22	26	20	14	30	11
GTGGTGTTCGGTCTCG	ref_5771_new	7	22	12	14	14	9	15	8	16	15
CGGATTCCTTGTTTAA	ref_5771_new	32	39	34	37	37	23	32	35	37	28
GAGATTTCCCCGTAGC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TTCCGGTGGTACTGGC	alt_5771_new	8	13	11	14	17	11	20	6	22	9
TTGGGGAACCACTATA	ref_5771_new	0	0	0	0	0	0	0	0	0	0
ACAATGGTCACGCGCA	ref_5771_new	15	14	18	19	28	13	16	16	21	16
TCATGGTGTGGGCTCT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CTCGATTGTGAGCACA	ref_5771_new	13	19	13	13	10	12	18	14	21	14
GTTGTTCTTGGCATGC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
GCAGTATTGTTTTGTT	ref_5771_new	14	16	10	13	21	11	19	19	18	23
CGGGTAGTGGCGCGGG	ref_5771_new	13	29	31	18	28	16	24	19	28	13
CGCCTGCACTCAGTTG	ref_5771_new	4	13	8	14	9	4	13	8	17	7
CCATGGGGATGGCATT	ref_5771_new	9	6	7	4	5	3	8	10	21	5
AGCTAATGGCAGATCT	ref_5771_new	28	32	37	36	28	21	49	24	37	28
TCTGGGTCCGATAGAA	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TATGTTGGCAGGCATT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
GTCAATCAGCTGCGAA	ref_5771_new	28	20	15	19	20	20	29	19	29	22
AGTAAGCAGTCGCACT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
GGTTTAGCAAGCCGGG	ref_5771_new	0	0	0	0	0	0	0	0	0	0
ACATTGTCACGCTAGT	ref_5771_new	18	12	22	16	26	17	21	26	30	11
TAAATATGCACGGTTT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CGTCCTTCAGACGTTT	ref_5771_new	7	6	4	9	9	3	6	5	7	3
TCTGGTTCCCATAAAT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
CTAGGAAAGGACCTGT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TATGTGTGACGATGAC	ref_5771_new	34	52	43	16	45	22	49	27	48	28
AATGTTTGCGCCTGAA	ref_5771_new	21	29	20	25	32	18	30	24	33	15
ATGGATTTTCGCAATT	ref_5771_new	0	0	0	0	0	0	0	0	0	0
TGATCCACTGCTTCTG	ref_5771_new	4	3	7	2	9	6	9	9	6	7
TATCGGATGCTCAATA	ref_5771_new	6	9	12	6	12	4	4	8	4	9
TCGATCAATGATAGTA	ref_776_missing	14	34	22	15	44	10	54	17	61	18
CATTAGACTTCACTCT	ref_776_missing	2	1	2	2	2	2	4	1	2	1
TGTCAAACTACCGCCG	ref_776_missing	56	92	62	54	92	48	83	45	110	39
GTTGGAACGTTCTGAT	ref_776_missing	5	18	19	12	18	14	19	13	22	8
GTATAATCTTTTGGGG	ref_776_missing	0	0	0	0	0	0	0	0	0	0
TGCCCCTTGCGTTTTA	ref_776_missing	91	110	92	77	131	64	116	72	123	62
CATTGACATAATTGCT	ref_776_missing	0	2	1	2	0	1	1	2	1	4
GCAGGTCTCGAAATAT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TATGTACGGTTTTAAT	ref_776_missing	27	46	31	31	37	20	35	24	37	20
TTCGACTCTTACCTAT	ref_776_missing	10	53	16	19	48	20	69	9	56	19
CGCCCCTTGCGTTTTA	ref_776_missing	0	0	0	0	0	0	0	0	0	0
AATTGTTGACCAGATT	ref_776_missing	3	4	4	4	12	3	10	1	3	4
GCTATTCGTCGTTGTT	ref_776_missing	10	25	15	15	15	18	24	11	21	10
TTAAAATGTTCGCGGG	ref_776_missing	2	12	12	3	9	2	14	6	6	11
GCGCACGGTCATTGTT	ref_776_missing	0	0	0	0	0	0	0	0	0	0
GCTCTATCGTACCTTG	ref_776_missing	12	21	12	11	10	10	18	6	19	11
AGCCCTATTCGGTATA	ref_776_missing	0	0	0	0	0	0	0	0	0	0
GGGACACCACGTTGCA	ref_776_missing	6	19	6	13	11	13	12	7	18	7
CGGTTTCCGACGGCCT	ref_776_missing	42	59	42	45	57	44	85	31	62	42
CGCGCAAACCGGGTTT	ref_776_missing	5	18	17	9	24	12	22	11	22	13
ATTTTACACGTTTTAT	ref_776_missing	36	40	26	23	48	35	41	26	53	23
GTCCGGTCTCATTAAC	ref_776_missing	6	25	12	9	26	5	26	7	26	3
GTCGTCACATAACATT	ref_776_missing	12	11	16	6	15	6	15	3	15	6
AACTGATGTTACACCC	ref_776_missing	21	29	30	23	45	24	40	23	33	29
GTCTTATTTCGGTTAC	ref_776_missing	92	149	111	74	165	83	176	99	172	103
AGACATAGTGTACGCT	ref_776_missing	21	61	26	29	68	21	58	24	70	21
TATTGCCGCGGCGGAA	ref_776_missing	21	47	34	36	57	26	65	29	67	25
CCCGTCCAGCTGGTGG	ref_776_missing	10	21	10	10	17	14	22	2	19	13
GCTCTCTGATCTCTCG	ref_776_missing	96	142	112	90	150	100	156	82	167	92
GTCAGCGCTTTTTTGA	ref_776_missing	4	12	4	3	10	6	21	8	13	1
ATTTTGCGCACAAAGC	ref_776_missing	19	20	28	23	33	24	37	17	35	18
TTTTGCTCCTGCGAAC	ref_776_missing	0	0	0	0	0	0	0	0	0	0
ACCCCTTGAGTTTTTG	ref_776_missing	46	65	28	34	54	23	55	43	50	22
CATACTCCGGCGCTAT	ref_776_missing	35	54	42	35	54	34	74	28	64	31
GGGCTGTCTTGAGTAC	ref_776_missing	7	12	6	10	15	6	13	8	19	3
GTGCAAACTGAGTCTG	ref_776_missing	16	37	28	24	53	17	60	31	37	24
TTGTTGAGTCCCATCC	ref_776_missing	28	38	25	30	39	34	35	23	49	24
CTTCTCATCTAGAACA	ref_776_missing	0	0	0	0	0	0	0	0	0	0
TAATTCGTCATCTAAA	ref_776_missing	1	2	2	2	4	2	6	1	3	3
CTCACCCGTCCGGCCC	ref_776_missing	0	0	0	0	0	0	0	0	0	0
CTTTACCACTGTTCGG	ref_776_missing	34	67	52	39	67	27	58	29	73	33
CTTAACCTTGTATTTT	ref_776_missing	18	27	15	21	21	21	36	8	34	14
CGGCGACCCGTGCAGT	ref_776_missing	35	57	43	44	74	40	81	50	75	40
TCAGGAGGTACGTTCT	ref_776_missing	0	0	0	0	0	0	0	0	0	0
TCCAATAAAATCGTTG	ref_776_missing	40	55	52	51	66	48	49	48	58	34
CTATTTCACGGTTGCG	ref_776_missing	0	0	0	0	0	0	0	0	0	0
TTCAACTTGCTGTGCG	ref_776_missing	37	44	38	25	51	41	38	28	47	22
ACTTTTTAATGGGCCC	ref_776_missing	0	0	0	0	0	0	0	0	0	0
GAGGTCATAGAACTCG	ref_776_missing	52	83	55	50	60	50	87	48	89	45
CGGCCGCCAAGGTATA	ref_776_missing	37	69	68	59	86	52	69	57	82	40
TATATGTTTGCTGTCT	ref_776_missing	3	8	6	7	5	1	15	2	8	1
TTTTGTTTCCAGCCCC	ref_776_missing	37	59	61	45	53	48	71	45	61	47
TTATTAAGGTGCAGAG	ref_776_missing	33	37	27	30	67	29	37	22	39	26
TGGTGAATCCATTATC	ref_776_missing	58	108	88	71	101	50	86	60	112	57
TTCGTCTCAGTTACAT	ref_776_missing	0	0	0	0	0	0	0	0	0	0
CATGCACCTTACGTTT	ref_776_missing	43	84	68	34	91	34	74	47	94	49
GCTGTGGGTTAAATTC	ref_776_missing	10	6	9	13	9	7	6	7	9	3
CATTTGAATAGCAGGA	ref_776_missing	0	0	0	0	0	0	0	0	0	0
TAGGCCCTAACTAATG	ref_776_missing	5	4	3	4	6	2	7	5	13	5
CTCAGATTCTCCGCGT	ref_776_missing	24	59	33	26	67	17	84	23	55	22
CTCTCTCGTCCAGAGT	ref_776_missing	27	70	31	27	64	41	80	33	72	32
TGAGTCACTGTTTTTT	ref_776_missing	50	31	65	37	42	33	35	47	30	41
TGAACTTGAAGATCGC	ref_776_missing	11	14	10	16	14	6	15	11	5	7
ACTCGTTACCCTATGC	ref_776_missing	0	0	0	0	0	0	0	0	0	0
CCTGCATCTGGTTTGC	ref_776_missing	50	90	63	51	93	46	87	45	81	39
TAGGCTCAGAGCGAGA	ref_776_missing	0	0	0	0	0	0	0	0	0	0
AGTTCGTATTTTTGAG	ref_776_missing	6	14	8	4	6	9	8	1	13	8
CAGAGTAGTGGTCCCG	ref_776_missing	2	3	2	1	4	4	8	2	2	1
ATTGGGACCTCAATAT	ref_776_missing	20	33	23	19	19	14	34	30	22	13
GCTTCATTTGTAATCT	ref_776_missing	16	19	29	13	28	7	18	16	21	23
CGATTTAGCATCCCCC	ref_776_missing	0	0	0	0	0	0	0	0	0	0
TTTGGGACAAGATCAC	ref_776_missing	0	0	0	0	0	0	0	0	0	0
TGCATAACGTAGCTGC	ref_776_missing	38	58	47	40	48	34	54	39	59	39
TCGACGCTAAAATGCA	ref_776_missing	8	14	7	12	6	10	14	3	13	6
TGGTGATTCTTCTTAG	ref_776_missing	207	336	245	230	348	188	348	187	384	165
TGTCTCTATATACTCC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
CCACCTCCGAGTACCG	alt_2569_negative	24	32	34	27	20	11	17	24	26	16
CGAGTCTTACGCGCTA	alt_2569_negative	16	17	6	12	16	6	15	4	24	4
ATACAGGTTTCATTCA	alt_2569_negative	5	7	2	6	12	9	8	3	6	4
TATGGGTTCACCATGC	alt_2569_negative	14	24	16	14	32	10	31	9	29	15
TGTCATCCACTTTCTT	alt_2569_negative	12	20	14	13	13	8	12	4	19	8
ATAAATGTCCATGGGG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GCCTGTTTCCTCGGGC	alt_2569_negative	10	19	8	11	15	12	18	10	21	10
CGCGCTTCCCGAAAGG	alt_2569_negative	33	62	48	40	65	49	81	40	87	30
TCGGGGGGAGTTCAAG	alt_2569_negative	24	34	9	12	21	8	22	17	23	12
TCGTTCTTACATTCTC	alt_2569_negative	4	17	9	11	10	3	14	7	13	3
TATATCCATTCACATC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
ATACTGCCGCTGAGTT	alt_2569_negative	0	3	3	6	14	2	7	0	8	1
ATTGCCGCAGTTGTTT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GAGCTTGCTAGTTCAC	alt_2569_negative	10	19	10	14	12	13	20	5	14	6
TGGATTTCGCTCATCC	alt_2569_negative	59	119	69	79	152	61	113	55	152	58
TGAGCATAAGACCATT	alt_2569_negative	5	15	7	6	13	5	28	13	18	4
TCTGCCGCGTATAATA	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TGCTCTGGTTTGCTAT	alt_2569_negative	30	47	22	7	38	20	47	14	26	13
TTAATTTAGAACGTAG	alt_2569_negative	40	63	37	39	62	28	78	29	69	36
GCTACACCGTTTAAGA	alt_2569_negative	35	77	41	27	70	25	84	28	92	36
TTAAACGATTACGCTT	alt_2569_negative	1	2	3	2	3	2	2	0	4	4
GGTGATCCCATCGTGT	alt_2569_negative	34	52	47	32	63	39	64	38	70	32
AAGTTCCGGCTTTTAA	alt_2569_negative	8	21	8	12	19	7	19	9	7	7
TGTGTACTCGACTAGC	alt_2569_negative	8	20	16	8	13	7	14	14	12	15
CAAGACACTCTTGTCT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
AGTTATTCTCACGGTC	alt_2569_negative	10	9	8	8	12	9	14	5	11	9
GGGCGCTTGAGTATTT	alt_2569_negative	5	12	2	12	17	9	11	2	13	9
ATCCCGGGGAGTTCAG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GAGGTTACGATTGGCG	alt_2569_negative	27	36	22	25	31	17	42	20	32	16
TCTCGTACCCGACTAA	alt_2569_negative	75	163	113	80	146	94	177	73	195	79
CCGCAAAATGTCCAAT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GTTACTTGCTTCCTTG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
AATAGCAGGTTGCAGT	alt_2569_negative	22	33	20	19	33	27	46	20	39	21
ACGAGCCTGCTGAGCC	alt_2569_negative	2	11	9	6	10	6	10	3	9	3
GATTACTTGATACGAG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TAGGCACACAAAGACT	alt_2569_negative	19	44	20	15	51	22	52	33	51	23
CGTACGCGAATTTAAG	alt_2569_negative	26	40	16	20	39	17	37	11	41	17
GCAACTCAACTATCCC	alt_2569_negative	0	1	0	0	3	0	1	0	2	0
GGGGCCTGCACCTAAG	alt_2569_negative	50	153	74	60	155	48	153	62	138	50
CATTCCATATATTGTT	alt_2569_negative	7	6	7	7	11	4	5	14	17	4
CTGGTTAACGAGGCCA	alt_2569_negative	18	32	20	23	28	10	24	18	29	21
CAAGGAGTCTCTTTAT	alt_2569_negative	62	100	65	48	94	59	106	39	99	49
GCGCTATTGTCTACGT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
CCTATATTGTTGTCCG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TTTGTACCAGCGCCGT	alt_2569_negative	38	60	37	35	63	29	58	41	58	39
GTTTCTTGGGGACCGC	alt_2569_negative	14	33	16	20	19	17	39	16	31	10
GCCGCTGACGTTTCAC	alt_2569_negative	1	4	2	3	7	0	3	1	11	0
GCTACCAGCCCTCGCT	alt_2569_negative	8	13	8	5	9	6	11	5	14	10
GGAAACCGTAATCTAG	alt_2569_negative	6	14	18	8	19	4	8	6	14	10
ACATGTGCGACTCTGC	alt_2569_negative	16	71	17	7	89	18	95	15	83	8
GAACGCTGTACTCCAT	alt_2569_negative	21	22	21	14	32	18	35	9	28	10
TACTCAACCTCAGGAT	alt_2569_negative	24	52	29	24	33	26	60	21	42	31
GCTCGCTTCTCCTTCG	alt_2569_negative	10	31	15	13	35	11	43	7	31	16
CACACTCTTGTCATGT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
ACTTTTCTACGGGAAT	alt_2569_negative	14	25	18	13	37	15	41	13	25	20
GGATTTATGTTATGGG	alt_2569_negative	26	68	52	28	78	35	68	37	64	21
GTGCTGGTCTCCCCAA	ref_2569_negative	5	18	23	23	33	20	36	14	30	12
GTTGTTAGTGGCATGG	ref_2569_negative	89	121	109	102	138	105	139	73	140	90
ACGTATAATTGCTTTT	alt_2569_negative	12	32	18	10	18	14	18	15	17	16
TTAAGGGGGGCGAGCG	alt_2569_negative	14	7	4	5	7	0	14	3	4	6
AAAATTCATTAGTTGT	alt_2569_negative	17	14	20	15	28	9	17	14	25	9
GGTTAGCCCTAAATAG	alt_2569_negative	4	13	7	9	12	6	13	5	19	8
GTGATATTTTCCTTGG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GCGGCTGGGGAGGTTG	alt_2569_negative	13	36	18	13	24	14	21	9	30	12
CTGATCTTATTGTAGT	alt_2569_negative	66	113	85	68	121	56	125	58	115	62
CTCTCGGGGACTTCCA	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TGGATTCTTGCGGCTC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GGGTGTATCCCCAGCG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
ACTTGCGCGTCGGTAT	alt_2569_negative	1	2	2	1	0	5	5	4	4	1
CAAGAATGTCGGAGGA	alt_2569_negative	9	12	14	9	9	9	11	6	13	9
CTCCGCCAGCCAGTGT	alt_2569_negative	5	14	11	9	23	9	18	12	18	3
CAATGCGCTTTTGTCG	alt_2569_negative	53	114	63	49	101	65	104	46	125	56
TGGTAATACTACGTAA	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GATGGCTATGCGCGGT	alt_2569_negative	7	17	9	7	19	6	10	10	18	3
AGCCAGATTCCTTCGG	alt_2569_negative	11	17	7	10	17	13	16	10	24	11
TGTCCGCTTTATTATT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
CACTCTTCTACACGTC	alt_2569_negative	1	17	1	0	17	0	15	0	15	0
TCCGTATTCTTGATAG	alt_2569_negative	0	4	1	2	8	3	3	2	4	2
ATGACAATCCCCTGGG	alt_2569_negative	0	3	7	3	4	3	2	2	5	0
GGTCCTCACTCGGTCA	alt_2569_negative	3	14	6	5	16	7	7	8	12	6
TAGGGACTCCCGTGGG	alt_2569_negative	21	50	24	17	44	16	38	13	52	15
TCGCCAGCGTCCCATT	alt_2569_negative	19	36	30	29	40	23	46	23	42	18
CTGCACTCAGTTAAAA	alt_2569_negative	2	7	7	5	13	9	10	4	13	12
AGATGTCACTAGCGAG	alt_2569_negative	6	15	9	4	7	10	6	7	13	7
CGGCGTATGTCGTCGC	alt_2569_negative	37	47	31	20	51	23	55	25	64	26
TAGCGTTTGGGTTTCT	alt_2569_negative	8	14	19	9	14	14	15	11	19	14
CACGTGGGACTTCTCG	alt_2569_negative	3	3	0	2	10	0	6	4	4	2
ACCACTTGCCGTAGTG	alt_2569_negative	2	9	2	1	6	0	5	4	7	1
GACACGTTTAAGTTTG	alt_2569_negative	4	10	6	7	6	7	10	4	11	3
GTACCTTATGGGTACT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GTTTAGTAGTACCATA	alt_2569_negative	12	36	19	9	40	8	46	10	41	8
CAGTTCACTGCCAGCT	alt_2569_negative	3	1	1	1	1	4	5	1	7	4
GAGTGGCACCCTCCTT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
AGCCAGCAGTGGAGAA	alt_2569_negative	25	64	36	23	75	32	81	21	77	21
TGAATCGGTTACAGTT	alt_2569_negative	8	9	6	10	6	8	15	7	8	4
TTTGATTCCGCTTGTA	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
CGTAGCAGCCTGCGCC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
AGGGGTTTTCTGGTGC	ref_2569_negative	22	16	17	19	28	27	33	21	20	17
CCGGCATGCATGACCT	alt_2569_negative	24	60	32	21	83	14	77	14	72	21
GGAGGCAATTTGCAAC	alt_2569_negative	2	7	3	3	2	0	4	3	6	1
CTGACTGAGTCTGGAA	alt_2569_negative	21	48	28	18	74	20	62	16	54	19
ACCTTGCCGGCGTCTG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GCATTACCGCGACGTT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
AAATTTAGCCCACCCT	alt_2569_negative	53	90	59	48	91	72	97	38	96	42
TCGCGAAGGTGACCGA	alt_2569_negative	10	12	9	3	11	3	13	5	4	9
AATTAGGCGACGAAGT	alt_2569_negative	85	102	97	73	120	62	112	74	127	71
CTTTCCCTCGTAAATC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
CGATTATGCGCCTTCA	alt_2569_negative	3	32	3	1	30	0	25	2	28	2
AATCGATCCTGCTCGG	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TTGCTCCTTCTTTTTT	alt_2569_negative	2	4	4	7	6	5	2	3	15	9
GGCTCAGTCTTTACCG	alt_2569_negative	4	11	6	8	10	9	13	4	20	6
ATTTCGAGCTGTACCG	alt_2569_negative	3	2	4	2	10	1	8	2	7	2
CGTGGTAGTCTTTTCG	alt_2569_negative	53	77	67	55	87	50	74	54	77	38
TCTTTTAACTTTTCTG	alt_2569_negative	27	54	40	29	35	27	44	29	41	21
ATCGAGCTTTGTCTTG	alt_2569_negative	4	11	9	16	23	9	16	5	27	7
TCATTCCTGGGTTTTC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TGCCCATCTGTGCAGG	alt_2569_negative	13	53	15	12	42	8	43	6	49	9
AAACTCCGTGAATCCC	alt_2569_negative	8	18	16	12	17	10	22	10	24	13
GAAAGGCTTCCAACAG	ref_2569_negative	4	1	2	0	2	3	2	4	6	2
GTCCTATAGCACGAAG	alt_2569_negative	35	65	49	37	80	32	70	24	69	35
CAATTTTTGGTTGCAT	alt_2569_negative	4	13	4	8	6	7	5	3	8	6
TGGGCAATTGTCTGGT	alt_2569_negative	11	22	18	13	26	19	38	11	38	15
TGTATTGTTCCCTATT	alt_2569_negative	22	56	25	21	55	21	33	10	42	22
GTCATTTTTTGAATTA	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TCTGTGTCTTTTTCAG	alt_2569_negative	3	8	5	4	7	4	4	8	9	1
TACGAAACTATGCCTG	alt_2569_negative	2	4	5	2	8	0	11	3	13	4
TAAGTGTGTAACGCGA	alt_2569_negative	35	72	41	29	84	43	95	41	91	30
GCTCAATTCTGGGTAC	alt_2569_negative	14	30	13	5	21	12	27	9	29	11
GGCATATCGGGTCATT	alt_2569_negative	19	33	13	16	32	13	33	9	29	11
CCTCTGCGCGATTGGT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
CTTCATGTCTTTCCCA	alt_2569_negative	16	22	23	15	19	13	10	15	26	13
GTGGAAGTTGTCTAGT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GACTTTGTGTATAGGT	alt_2569_negative	6	15	7	10	11	8	11	3	18	5
CGGCGAACGTTATGCT	alt_2569_negative	4	6	6	7	11	3	10	8	10	5
TTCTTTCTAGAGCCAT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TTACTCTGTTGCCCAT	alt_2569_negative	6	14	8	6	9	7	2	5	12	3
TGGGCAAGTTGGCTCC	alt_2569_negative	13	6	7	7	12	4	8	4	7	7
AGACCTGTTCCCGGAC	alt_2569_negative	3	6	4	2	7	3	9	7	12	1
AGCTATGCGGTACGCA	alt_2569_negative	43	55	41	36	88	33	74	34	77	33
CCCCAGTTGGATTCTT	alt_2569_negative	5	30	13	8	29	10	37	8	26	5
CCCGATATTCCCCATA	alt_2569_negative	10	28	9	8	23	7	21	13	30	13
ACACAGAGGCATGCCA	alt_2569_negative	3	11	9	4	3	3	7	5	4	5
GGCTTGGACCACCATC	alt_2569_negative	0	2	2	3	9	4	5	2	4	1
ATGCCGTACCCCAATC	alt_2569_negative	16	27	14	13	17	7	21	15	15	5
GACTAGGTCTCCTTAT	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
TTGCTTTATATTCATT	alt_2569_negative	8	15	13	5	13	12	16	10	19	2
TGATATGTGCTCACCC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
ATTCCGGCTATCGCTG	alt_2569_negative	9	15	12	5	15	19	12	12	13	15
CGGGCTATGCTTCTAC	alt_2569_negative	12	20	12	8	25	7	28	8	15	9
ACAACCCCTATGCCCA	alt_2569_negative	8	6	2	2	4	8	7	3	9	3
TTTGCTTAGTACCCAG	alt_2569_negative	5	20	9	11	18	9	23	2	16	4
TAGCATGCTAAAGTAG	alt_2569_negative	19	56	23	19	32	16	40	21	34	19
GCGGTCTCACAGTGTA	alt_2569_negative	14	38	13	17	38	14	43	23	51	23
GCTTCTCGCCAACTAA	alt_2569_negative	35	42	36	29	50	46	86	52	70	16
CACTCATCCGAGTATC	alt_2569_negative	0	0	0	0	0	0	0	0	0	0
GACGGTATAGTTCATG	alt_2569_negative	3	5	9	1	3	1	3	1	7	4
TGTCTCTGGGAACGCC	alt_2569_negative	16	20	16	11	24	10	21	12	27	12
TCGTGTGCGTTACTCG	alt_2569_negative	15	20	8	6	27	6	24	11	18	12
CACTTGAAAAAAAACT	alt_3079_missing	7	6	11	13	12	10	7	12	9	17
CAACCTCCGCGTGATT	alt_3079_missing	3	21	9	8	21	6	17	6	15	2
TCTGATAGTTCGGCAG	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
TGATCAAAGTATGTTG	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
ATGATGCAGCCTCCTA	alt_3079_missing	60	38	64	70	47	63	41	67	49	52
CCTGTTTCGTTCTTTC	alt_3079_missing	91	66	123	112	59	102	70	85	79	69
AATCTCCAGTGACTTT	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
GCCAGTGCCCAGTTGC	alt_3079_missing	2	1	0	1	1	1	1	0	0	2
TCCTGCCCAGGTCATC	ref_3079_missing	39	31	67	74	52	53	50	57	56	63
ATGTTGCGAACCTACT	alt_3079_missing	40	43	68	29	31	53	41	42	39	42
GTCTGAATTAGTTAGG	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
ATTTGACTTAGGTACA	alt_3079_missing	32	26	35	18	20	32	24	33	28	25
GGGCCACTAAATCTGT	alt_3079_missing	217	165	246	247	198	235	190	206	194	191
CAGTGCAGCCTATTAT	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
ACACTTAGTGTTGGGG	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
ATGAATTTTGCGCCTA	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
TGCAAGAAGTGCTCAG	alt_3079_missing	97	75	119	83	71	83	79	71	97	70
TGATCGTCACGGTCAG	alt_3079_missing	26	16	18	17	16	24	12	22	11	15
GTCTGATGCCTTCGTG	alt_3079_missing	80	51	96	61	46	56	81	59	81	45
CGGCAAAATTGGAGAC	alt_3079_missing	19	12	13	13	15	8	11	8	15	16
GATTCCCTGCCGCCTA	alt_3079_missing	22	15	16	16	15	12	12	18	20	18
AACTTATTAGCGTCTG	alt_3079_missing	78	80	103	82	73	93	68	80	72	85
ATAGCGACTCCTGCCT	alt_3079_missing	18	19	19	23	30	14	19	24	20	15
ATCAGTGTGGCTTCTA	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
CACCATCCTTAATTTA	alt_3079_missing	35	49	52	36	45	57	31	48	43	50
GATCCAACCATCCGTG	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
ATGGGGCTTTAGGGTT	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
TTCCAACCACAGTTAA	alt_3079_missing	16	27	18	19	23	16	23	19	17	20
ACTTGATTACTTACAT	alt_3079_missing	2	5	4	3	5	4	4	4	0	2
CATTATTTTCACATAT	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
CACATTCGACGCGAGC	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGTGGGTTGTTC	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
CCTATCAATTGGACTT	alt_3079_missing	15	11	18	18	7	13	20	7	11	17
GTAACCCCCCCGATGT	alt_3079_missing	25	24	20	23	25	27	17	18	26	18
CCCTTGGGTTGTCGCT	alt_3079_missing	94	79	117	100	88	91	81	102	74	91
GCGCACCGGATGATCT	alt_3079_missing	0	3	0	0	2	0	0	2	2	1
CTTCGCTCTTATGGCT	alt_3079_missing	39	34	51	58	46	28	47	59	53	40
TCCATGCAGCCAAGAC	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
ATATTGGACCTGGCCT	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
CGTTCGCATACGTCTG	alt_3079_missing	8	14	32	19	16	19	15	22	8	17
GGTGTTACCTGACTAA	alt_3079_missing	1	7	10	4	5	6	6	16	5	2
TTTAGATAGACCTCCG	alt_3079_missing	26	15	18	28	17	27	26	36	21	19
TGGCCTTTGACTACCA	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
TTAGCACCTCTTATGC	alt_3079_missing	53	38	61	41	34	39	41	28	39	34
CGGGCGCTGATATTAA	alt_3079_missing	5	9	5	1	11	4	10	3	8	2
CCCTTATGGGTTCCCT	alt_3079_missing	43	21	41	16	29	22	35	28	20	18
AACGTAGATGGTGACA	alt_3079_missing	1	0	0	0	1	0	0	0	0	0
AGATGAGCGCCTCAAA	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
TAATGATTGCGAGACA	alt_3079_missing	3	2	7	9	0	1	4	5	4	4
TATGTATGACGCGGTC	alt_3079_missing	0	0	0	0	0	0	0	0	0	0
GGACTGATGTCCGGCA	alt_3079_missing	19	19	27	42	27	27	26	33	22	26
CACCCGCGGGATGAAA	alt_3079_missing	27	22	22	21	21	30	23	14	17	20
TTCTTTCTTTTTGCAC	alt_3079_missing	13	6	3	7	6	4	11	9	3	9
TGAGTTCGCTGACAGG	alt_3079_missing	35	26	43	38	29	27	42	25	28	35
TCTCCGGCGTAAACCA	alt_3079_missing	92	50	81	65	71	69	81	62	88	67
CAGGAATACATATATG	ref_6052_new	75	74	80	64	83	62	84	71	69	72
TTCCCCCATCCGTGCG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
ATGTATAGTCTGGTTC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TGTGCTCGCGGCTAGT	ref_6052_new	0	0	0	0	0	0	0	0	0	0
CCAACGACCCCCGCAA	ref_6052_new	12	30	20	22	26	21	21	19	19	12
GATTTCGCGTGTACAA	ref_6052_new	5	2	10	3	6	3	4	3	1	5
ATAATAGCGCAGCGGC	ref_6052_new	20	35	29	32	36	31	37	34	40	30
CGGGTCACCATGAATG	ref_6052_new	3	0	2	2	6	2	3	2	6	2
GCGCTTAAGTCAGATT	ref_6052_new	19	20	20	24	41	28	32	21	36	22
TCTTTGGAGGTAACCG	ref_6052_new	25	39	47	34	37	40	44	33	67	24
CATTTCGCCCCCTCCG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
GCGCTATTGTATGCAT	ref_6052_new	12	16	11	6	11	17	20	5	7	8
GTTTCGTTTGGAGTGG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
GATTTGCCAATTCGCG	ref_6052_new	7	14	11	14	14	9	10	8	21	5
AGTCTTAGCAGCGCTA	ref_6052_new	0	0	0	0	0	0	0	0	0	0
GGTTCCGACCCCCTCG	ref_6052_new	10	7	8	13	14	15	18	14	18	7
AGCGCTCTTTAGTTAT	ref_6052_new	1	6	6	2	3	0	1	3	4	4
CGGTGCAGCGGTTCCG	ref_6052_new	7	4	5	3	9	5	2	7	6	2
TGGTTGTGGTGTAATG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
CCATTATCTACCCGGT	ref_6052_new	125	137	109	103	133	114	178	88	160	115
GGGAATTCCCCGAATC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
ATCTCGTTTATAGAAT	ref_6052_new	9	20	9	12	13	14	21	15	15	6
AGTCATTGTTGATTCT	ref_6052_new	17	14	18	16	17	16	22	18	49	13
GCCTTGGACGGGTCGG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TACAACCTGCCTACAT	ref_6052_new	8	23	11	9	29	7	26	11	32	9
CCTATAGCCAGCTTAG	ref_6052_new	0	4	2	0	1	5	4	1	4	1
AGTGAAAAACAGAATG	ref_6052_new	15	25	18	18	14	26	20	16	22	17
TCTCATCTTGATTCCG	ref_6052_new	11	15	11	14	18	14	14	14	18	14
CGTGTGTATTGTCGAG	ref_6052_new	21	36	42	24	17	16	22	17	29	23
GCGAATGCGTTGGATG	ref_6052_new	20	43	25	37	37	25	32	22	44	33
AGTGTCGTTCGCTAAG	ref_6052_new	102	112	123	117	123	83	153	72	143	90
TAGTCTTTCATAGGGC	ref_6052_new	25	26	22	13	21	16	27	21	36	15
TCTTCTAACTAAGAAG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TCACGTTTTAGTCTCG	ref_6052_new	36	47	34	30	45	21	37	18	43	22
AGTTCTTTGAGAAAAA	ref_6052_new	27	29	50	24	56	38	43	29	29	27
TGCCTTTTACGTCAGG	ref_6052_new	32	65	61	47	44	35	66	32	75	46
CAAAAAAATCACTTAG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
AAATTCTATTAAGAGC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
CATTCCTACCGTTTAC	ref_6052_new	36	33	54	28	55	39	58	38	55	37
TCCCTAAGGGTGTACT	ref_6052_new	0	0	0	0	0	0	0	0	0	0
GTGCCGGAGTATTCGA	ref_6052_new	216	266	260	228	244	245	248	202	287	198
GTACCGGTATTACCCG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
GGTAGGGTCGGCTTTC	ref_6052_new	16	25	24	24	35	21	41	16	31	14
GAAATCGACTTTAACT	ref_6052_new	0	0	0	2	1	0	3	1	2	0
CTAAGTTCATTACGTT	ref_6052_new	6	9	8	6	10	3	3	7	8	3
TCATCCTGTCTTGGTG	ref_6052_new	28	28	34	28	46	29	57	34	46	26
TGCCACCGACTCTAGG	ref_6052_new	37	70	62	66	68	58	87	58	71	44
TTGTTGCAGGGTCTAC	ref_6052_new	5	5	6	10	5	3	12	1	7	6
GCGCTAGCCATGTCGT	ref_6052_new	2	2	5	4	6	4	9	2	6	3
CACCTGGTTGTTCAGG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
GGCGTTCCCCTCGGGG	ref_6052_new	25	11	10	13	23	16	28	18	26	11
ATGTGCTTCAAATAAC	ref_6052_new	12	11	10	9	14	8	19	5	7	4
CCTAGAATACTGGCAG	ref_6052_new	14	23	18	12	34	10	15	7	20	8
GTCGCATCTCGCATAG	ref_6052_new	28	61	44	43	62	33	63	29	48	41
CTGTACATAATTGAAG	ref_6052_new	31	41	23	20	35	11	30	13	22	20
TCTGGGATTTTGGCTT	ref_6052_new	69	105	96	81	95	77	120	89	111	70
GGGGATTGGGTCTACA	ref_6052_new	26	46	37	41	39	28	32	28	53	29
TGTAACTATCGTCGTA	ref_6052_new	11	14	18	12	16	21	18	14	21	18
CGTTCTTTGCCGCTAG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TTCAGTCGTGCCTGGT	ref_6052_new	0	0	0	0	0	0	0	0	0	0
CCAGGTGAAGGGTCTT	ref_6052_new	0	5	1	2	2	3	1	1	3	1
CAGTTAGACCGAACTG	ref_6052_new	10	13	13	7	10	9	12	9	4	15
TACCTCACTGACTTGC	ref_6052_new	103	87	95	88	106	79	134	56	100	93
GAACATCCGACCGTGC	ref_6052_new	72	134	81	78	139	75	158	75	154	62
TGAGTCTGACCTTCCT	ref_6052_new	80	92	95	89	88	82	110	86	119	82
CGTTTCCGGAGATCAC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
CAGCTCTCTCAAGCTC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TCAAACATGCTACCCT	ref_6052_new	30	34	31	20	25	19	37	22	32	21
CCCCATCATGAGCTGC	ref_6052_new	11	30	26	14	38	17	27	27	39	24
TATTAGTGTCATTTAC	ref_6052_new	3	20	14	12	8	6	18	8	19	6
CCCACCATAACCGGGC	ref_6052_new	31	36	20	30	42	43	46	28	36	37
CTCGTTAGACCGGGCC	ref_6052_new	36	44	64	44	62	46	50	36	56	42
GATTGACAATTGCCGT	ref_6052_new	55	80	81	60	54	47	80	36	76	48
GTGTGCGGTAGTAGAA	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TTAAACGGACGTGGGA	ref_6052_new	164	178	171	126	140	145	182	105	200	143
AACCTCGGACGCTACT	ref_6052_new	52	85	52	68	78	58	82	47	69	61
TTGGTCCCAAAGTATG	ref_6052_new	9	2	5	2	11	5	4	8	4	7
CTTTCTCATATACCTC	ref_6052_new	10	7	15	11	8	8	9	1	12	6
GTCTGGAGGTTTCCGG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
GTTCCAATGTAAGTCA	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TTTTCCTCCGCCTAAC	ref_6052_new	28	27	41	30	32	23	36	26	55	27
TCAATGTTCATTGGCT	ref_6052_new	2	1	11	3	5	6	9	1	7	7
TAGTATAATTCCCGGC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
AAAGCCTCTCTTATCG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
CCTCCCATCGACTTCC	ref_6052_new	25	60	44	30	27	39	51	32	67	36
ACTTCACTACAAACGA	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TCACCAGTACAGCATC	ref_6052_new	14	24	26	15	11	15	27	19	21	20
AATACTCACTTGAAGC	ref_6052_new	17	21	30	29	23	18	19	13	30	17
CGCGAAATGTCTATAC	ref_6052_new	12	24	21	19	15	11	15	11	13	6
CGTTCCATCATCAAAC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
AATTGTCAGTCTCTCC	ref_6052_new	6	4	5	2	8	4	4	4	5	3
TTGATCCCATTTAGAG	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TCCATGTACCTCACCT	ref_6052_new	9	24	9	7	26	8	25	4	40	6
GTTTCCGATCGTTGTT	ref_6052_new	29	23	24	25	30	30	32	25	37	31
TGGAGCTCGATCGGGA	ref_6052_new	21	20	24	17	23	11	18	21	14	14
TCCCGGACCTTTATTT	ref_6052_new	0	0	0	0	0	0	0	0	0	0
ATAGACTTTTCCCTCT	ref_6052_new	17	14	12	11	21	14	20	13	21	6
GGATCGTTTACGGCTT	ref_6052_new	23	23	51	34	44	33	44	30	51	33
GGCTTGTTTCCCCTCA	ref_6052_new	0	0	0	0	0	0	0	0	0	0
AGGCGCAGTACGGTTA	ref_6052_new	0	0	0	0	0	0	0	0	0	0
AGCGAATTTGTTGTCG	ref_6052_new	45	69	65	60	71	46	74	54	77	41
TATCCGTTCGTATGGA	ref_6052_new	4	2	7	8	3	1	1	6	7	1
GATTGTGACGTGCCCT	ref_6052_new	0	0	0	0	0	0	0	0	0	0
AGGGTCTAATGCATTA	ref_6052_new	0	0	0	0	0	0	0	0	0	0
CACCTCCCAATTACTC	ref_6052_new	0	0	0	0	0	0	0	0	0	0
TGCGGAAACGGCAAGA	ref_6052_new	13	22	26	21	20	16	36	24	26	28
ATATTTTTTTACAAAG	ref_6052_new	13	28	19	20	14	14	17	14	24	13
CACCGCTCATTGGTGG	ref_6052_new	33	62	55	65	64	44	53	50	69	38
AGGTGCTAGCCTGGCG	ref_6052_new	93	89	94	76	102	103	97	82	122	77
CTACTTGTATCCATCA	ref_6052_new	13	13	8	13	17	12	19	20	21	8
GTGTATCAGTGCTTAC	ref_2349_reverse	10	15	1	12	14	10	12	7	7	8
TTTCGAACTTACCTCC	ref_2349_reverse	3	33	1	1	43	4	35	4	45	4
AGCGCTTGTCTTGATT	ref_2349_reverse	155	203	181	167	171	147	205	110	199	125
TATATAGTGGCCCCAC	ref_2349_reverse	3	5	1	1	7	6	0	2	2	0
GTTATCTATTTTTAGT	ref_2349_reverse	12	25	18	6	9	8	20	17	18	15
GCATCATATCGGGAAA	ref_2349_reverse	26	49	38	47	58	36	51	34	49	36
TCGATTAGGCCATGCC	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTGGTGGCTTTCT	ref_2349_reverse	37	51	34	53	44	42	56	29	54	26
TCCTTTTCCGGCCCGG	ref_2349_reverse	45	60	43	46	47	25	40	39	44	34
TAGACAATTGGTAAGA	ref_2349_reverse	71	108	74	69	94	81	108	74	108	76
GTGCCGTAATTTTCAT	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
GTCATCGGAGTCCAGC	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
GAAAAAGCAAGGTCGT	ref_2349_reverse	172	269	220	194	264	192	265	187	243	183
GCATGGCGGTAACAGG	ref_2349_reverse	9	1	7	5	5	5	1	2	1	4
TTCGGTCCGATCGGTA	ref_2349_reverse	21	23	19	14	27	20	23	12	31	11
TATGGGTATAATCGCT	ref_2349_reverse	53	96	61	54	79	54	70	59	109	48
TATATCTCGGGAATAT	ref_2349_reverse	11	11	14	11	13	7	27	11	24	10
GTTCAAAACTATATTA	ref_2349_reverse	27	37	32	31	35	27	43	25	21	17
ATGTTTGCAACCTCGG	ref_2349_reverse	59	106	87	55	91	73	97	52	98	60
GGCAGTGTGCAACTGA	ref_2349_reverse	47	52	62	64	76	64	83	60	93	49
TCGTGACGAAATCTCT	ref_2349_reverse	20	17	22	15	22	10	11	14	27	12
TTACCGTATCGAACAT	ref_2349_reverse	13	21	19	15	17	10	29	11	23	15
CCGCCCATTTCCGCTG	ref_2349_reverse	309	387	372	259	376	302	361	215	393	227
AGGAGGGTCTTTGGAA	ref_2349_reverse	34	44	39	35	34	31	23	27	37	26
AGATTTAATAGAAGAT	ref_2349_reverse	54	57	67	48	68	60	60	49	70	43
GCCTTTGCGGTCTCAT	ref_2349_reverse	45	58	45	38	61	45	57	48	65	39
TAAGGTTAATTTACAT	ref_2349_reverse	30	37	29	27	33	24	37	16	41	23
CCCCGATATTGTTTTT	ref_2349_reverse	9	14	6	6	13	7	17	4	17	3
AGTATATATGCTCACA	ref_2349_reverse	0	1	0	1	8	3	1	1	2	0
GTATTGTTAACTGGCT	ref_2349_reverse	6	15	8	5	14	6	15	10	13	6
TTTTTCCCGGCTACTG	ref_2349_reverse	27	33	31	7	42	19	37	21	45	12
CTGACTCGTACATATA	ref_2349_reverse	4	2	8	1	5	5	4	7	4	2
ACTCGTTAGTCGAATT	alt_2349_reverse	44	56	35	31	56	32	56	38	61	32
AGTATGTAGATGTGAC	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGTTATTCCAGTG	ref_2349_reverse	62	110	62	61	87	63	119	56	104	57
ATCATATGGCCAGGGC	ref_2349_reverse	27	20	25	10	22	10	26	12	23	20
GTGCAGCTGTGTATCT	ref_2349_reverse	45	34	33	33	40	47	45	28	55	29
ACCGAGTGAAAACCAA	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGTCACGGCCCGT	ref_2349_reverse	5	5	5	9	6	6	3	2	4	3
GTATGAACGGTGCTTA	ref_2349_reverse	3	9	5	3	6	8	15	2	9	5
CAATATAAGTTAACGG	alt_2349_reverse	19	39	52	25	47	22	40	32	47	23
AAACCTAATTTCCTGG	ref_2349_reverse	17	29	21	18	21	12	26	19	29	17
CTGTAAAAACTCTCCA	ref_2349_reverse	30	44	42	25	43	37	35	36	39	29
CTCCTGGGCCTTCCCC	ref_2349_reverse	6	10	15	12	14	21	23	19	19	9
AGGGGCTGGCTCGTAT	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCTCTGGCTGGTG	ref_2349_reverse	121	143	136	138	175	112	189	120	173	111
TCCTATGCTTTTAGAT	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TTTGACGTTAAAGTGT	ref_2349_reverse	4	13	6	1	10	3	6	3	9	6
ATTGTTCCCATACTCG	ref_2349_reverse	60	77	61	56	70	64	83	65	75	50
ATTCTCGAAACATGTC	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGTTTTTCATACC	ref_2349_reverse	57	107	86	60	111	59	122	63	93	58
GGTTACTCCATGATTG	alt_2349_reverse	108	144	107	102	164	124	169	107	167	125
CGCATTAACGCCAGAA	alt_2349_reverse	23	23	26	23	35	30	33	18	33	24
TTGCGGGTTAATTAGC	ref_2349_reverse	8	15	12	1	20	11	17	12	16	8
GAGACCACCATGGCAA	ref_2349_reverse	54	88	91	65	76	67	84	66	84	55
TTGTGAAAAATGCCCC	alt_2349_reverse	261	298	283	249	294	254	320	214	334	189
AGCTCTGTTTGACAAG	ref_2349_reverse	25	50	39	25	33	19	39	26	42	18
TCGTTTTGTGTTCGTA	ref_2349_reverse	55	98	74	57	95	59	72	54	94	52
TAATCTCTTCTTTTAG	ref_2349_reverse	18	27	27	18	33	20	26	28	20	23
GTAAACACAGTAAACA	ref_2349_reverse	103	121	122	93	123	91	110	94	134	74
AGCGTTTGGATTTAAT	ref_2349_reverse	18	22	16	10	29	13	27	15	24	22
TGTGCTAGGCTAATAT	ref_2349_reverse	83	122	110	86	122	87	147	83	119	70
ATCTGTTTTCATACCG	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TATGTCTCCGGGATCT	ref_2349_reverse	12	11	11	18	19	18	25	12	20	12
GTTATCGGGGCGTTAG	ref_2349_reverse	23	26	34	23	41	38	38	22	26	22
AGCCCGCTACATGTAG	alt_2349_reverse	29	75	33	32	67	54	47	27	71	27
CAGATTTATTCTTTGA	ref_2349_reverse	15	6	20	11	20	10	14	15	13	11
CCAGACACGTAAGTCC	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TATTCATGCGTATTAG	ref_2349_reverse	19	27	15	23	12	16	27	27	23	20
GCTCTTCCTGGTAGGT	ref_2349_reverse	1	0	0	2	0	1	0	1	1	0
TCTGATTCGGGCTGCC	ref_2349_reverse	28	60	52	40	61	43	58	34	75	38
GAATAAGAGGCGGCAC	ref_2349_reverse	7	10	18	13	20	11	11	13	16	15
CTTTAATGCTCCGGTT	ref_2349_reverse	2	1	0	0	3	1	1	2	0	0
TTGGTGAGTAACTTTG	ref_2349_reverse	10	6	16	12	11	8	12	6	7	8
CACCGTCCCATCATAA	ref_2349_reverse	4	7	7	2	8	2	8	4	16	4
TCTACCGGACTGTTTC	ref_2349_reverse	37	30	34	31	38	21	45	36	35	20
TTCCTCTGGCGGTGGT	ref_2349_reverse	22	54	38	29	35	17	43	27	29	21
GCTTTTGAACTGATGC	ref_2349_reverse	9	6	12	2	8	11	11	5	20	6
TCCGGCGTTAGGGTGA	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
ACAGACTTCAGGGCCT	ref_2349_reverse	122	126	148	127	129	109	118	121	130	126
CGTTAATTTTGCTAGA	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
GACGCATCCTCCACAT	ref_2349_reverse	8	16	11	11	16	7	15	8	20	13
CGCTTCCTGGTTGCCG	ref_2349_reverse	35	59	52	47	57	38	38	50	58	42
GTAATTGTCGCGTTAA	ref_2349_reverse	34	37	31	32	33	36	43	26	53	34
TCTCCCTGGCCAGTAG	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGGCATTGCTTGC	ref_2349_reverse	6	4	4	5	8	2	9	7	16	3
TCAGCCCGGATATTTT	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
CTATGAATGTGTGCGA	ref_2349_reverse	46	48	31	32	53	32	37	22	59	25
CGCCTTCCACGAAGGG	ref_2349_reverse	107	157	112	99	161	94	140	95	154	80
GGCTGATGCGTCACTC	ref_2349_reverse	13	5	19	23	20	12	14	6	16	13
TGTAGGTAAAATGTGA	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTACACAGACATC	ref_2349_reverse	9	7	7	5	14	1	7	5	4	8
ACTAGGCCAATCCAGG	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTGATAACAGGT	alt_2349_reverse	69	128	95	94	97	69	113	75	128	70
TTAGCAACTACGCTGT	ref_2349_reverse	45	51	43	56	52	33	63	32	58	44
TCACTGCTCGGCCTCA	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
CACCAGTTTTATCGTC	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCGTGGGTTGTT	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCTAGGGTTGGGT	ref_2349_reverse	43	74	53	50	56	47	71	36	69	35
TCGTCCGCGTAGCTCT	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
CCCACTGTACCAACCC	ref_2349_reverse	12	33	12	15	20	14	28	10	31	11
GGGGCGACACCATGGA	ref_2349_reverse	37	55	42	35	41	35	33	39	53	20
AGTTGGGGAATGATCA	ref_2349_reverse	54	66	58	57	62	55	90	46	81	51
GTTCCACTCGAGAGTT	ref_2349_reverse	39	43	34	35	50	40	43	32	44	33
GCTTGGCATGGATTTA	ref_2349_reverse	41	47	70	37	39	35	47	40	62	27
TCGAACGTTTACTTTC	ref_2349_reverse	3	15	9	4	14	8	6	8	9	6
AAAGCTTGGATTAAAA	ref_2349_reverse	8	5	14	18	13	7	8	8	7	6
TCCTATTGCAACTTTC	ref_2349_reverse	18	33	27	21	22	22	30	23	25	18
GGTGCTATTTAATGGC	ref_2349_reverse	18	25	34	17	32	20	41	17	40	21
AACATGGGTTCCTTGA	ref_2349_reverse	30	21	21	38	24	22	24	25	32	15
TAGAACTATACGGTCA	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TTATCCTAGATGGCCA	ref_2349_reverse	54	71	47	56	86	59	74	63	75	50
GTTTTACGTTACGGTC	ref_2349_reverse	15	17	11	20	16	23	25	16	15	12
GTGACCAATCGGTCGT	alt_2349_reverse	8	6	6	4	11	9	12	6	12	7
TTCCTCGATTCCGGAC	alt_2349_reverse	29	61	46	31	59	33	47	34	38	35
ATTACGACCACGTTTA	ref_2349_reverse	5	6	5	11	12	10	9	1	15	6
CTTAGCCAGCTAACTT	ref_2349_reverse	109	153	122	118	171	128	162	116	191	109
ATCACCTCTGTATCTG	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TAGACAGGTGAATACC	ref_2349_reverse	28	42	32	35	42	29	34	25	43	29
GAGTTGGGCGAGTAAA	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTCGGGTGTTTAC	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
TCCTAGATATTGGGCT	ref_2349_reverse	0	0	0	0	0	0	0	0	0	0
CCGGCGCGATTTAAGA	ref_6064_new	29	39	22	22	54	23	59	26	36	22
CCTCAGTCAATATGGA	alt_6064_new	63	107	66	52	100	63	106	77	115	53
GATTCATCTTCAACCA	ref_6064_new	3	11	13	9	7	13	22	7	13	5
GATAGCTTCGTTGCTA	ref_6064_new	0	0	0	0	0	0	0	0	0	0
CATTCCTTCCGTAGGC	ref_6064_new	15	33	6	9	37	13	44	12	36	20
CTTAGCGTAGACGGGG	ref_6064_new	100	191	154	117	206	137	208	112	231	86
GGCTGTGAGTTCACGA	ref_6064_new	0	0	0	0	0	0	0	0	0	0
TTCTGTACGTCATTGT	ref_6064_new	0	0	0	0	0	0	0	0	0	0
CCAAGTATTCTTCAAA	ref_6064_new	14	16	6	10	16	8	8	11	14	14
AAAGTCACCTGATGCC	ref_6064_new	0	0	0	0	0	0	0	0	0	0
TCTCCCGGCCAGCCAC	alt_6064_new	53	77	58	37	69	41	79	37	98	40
ATCACTTTGTTCTGCA	ref_6064_new	45	61	60	53	69	52	84	48	69	46
CTCGAGAATAGCCTGA	ref_6064_new	92	184	94	79	153	86	161	85	178	105
TTCGGCCATAGACAGC	ref_6064_new	2	4	7	4	7	3	5	2	1	3
TGCAGTTGGCTCCACG	ref_6064_new	51	78	72	55	92	48	75	43	83	48
AACCAATAAGTCCTCT	ref_6064_new	31	38	29	31	45	17	52	23	53	22
TGGGGACGGTCTTCGC	ref_6064_new	8	11	10	15	16	12	19	10	14	12
TTAGGAGACAATGCCT	ref_6064_new	0	0	0	0	0	0	0	0	0	0
CGGTATCGTCGTTTCC	ref_6064_new	0	0	0	0	0	0	0	0	0	0
CTGGGCCAGATACCTG	ref_6064_new	4	1	0	1	6	3	2	2	6	2
TTTGGGCCTTAGGTCA	ref_6064_new	38	64	50	24	47	23	56	43	57	34
CCGTCGAGTCAGGTCA	ref_6064_new	2	7	6	4	13	1	13	1	10	4
TACATTGCGTGTTTTA	ref_6064_new	0	0	0	0	0	0	0	0	0	0
GAGTTTCGTCCATTAG	ref_6064_new	86	153	114	75	191	70	147	73	179	75
CGACCAGGACTTAACT	ref_6064_new	0	0	0	0	0	0	0	0	0	0
GGTATCCAGATTAGTT	ref_6064_new	33	74	39	31	76	46	77	37	70	33
ATCTCAAGTGACGTAG	ref_6064_new	46	82	46	35	84	47	81	34	71	34
TCTGGCTAGGCCTATC	ref_6064_new	17	32	17	15	22	22	27	13	26	19
CGTGATGTGTTACCTG	ref_6064_new	0	0	0	0	0	0	0	0	0	0
GATTACCCGAAATCAG	ref_6064_new	6	10	14	8	18	9	17	5	10	9
CCCTCAGTCTAACCTG	ref_6064_new	28	50	34	17	31	14	40	20	47	12
ACACGGTTACGTCCGA	ref_6064_new	0	0	0	0	0	0	0	0	0	0
TTTGCGAACACTCTCA	ref_6064_new	36	80	62	47	88	45	85	38	82	31
CACTGGAGTCTCAAGG	ref_6064_new	67	82	65	42	95	49	100	65	89	44
GTACCTAATTGCGCGC	ref_6064_new	0	0	0	0	0	0	0	0	0	0
TCCCGTTGGTGGACCT	ref_6064_new	0	0	0	0	0	0	0	0	0	0
CCATTGTCCACGCCTA	ref_6064_new	21	39	27	21	38	13	51	16	37	20
TTAAGAGTGTTTTTCA	ref_6064_new	31	51	49	44	70	33	66	35	63	37
TGAACTCCGGCAGACA	ref_6064_new	18	35	20	24	38	12	48	17	36	15
TCCGGCAACGAAGTGA	ref_6064_new	12	17	14	16	15	11	19	13	22	16
GTGCAAGTTGCTAATT	ref_6064_new	38	51	50	40	59	44	54	27	52	22
CCTTCGGAAACTTTCC	ref_6064_new	65	109	64	65	100	59	94	51	116	47
GGCTTTCACTCTAGCG	ref_6064_new	17	26	16	12	26	10	25	12	44	17
TGGCTAATATCATTTC	ref_6064_new	65	75	82	55	93	66	89	48	77	56
CAGAAAATCACGCGGA	ref_6064_new	0	0	0	0	0	0	0	0	0	0
TATTTTCGCTTGCGTT	ref_6064_new	49	75	57	50	99	43	93	33	108	53
ATGCCCGCATAGACAG	ref_6064_new	34	57	39	33	41	20	62	24	62	30
CGGTGTAAGCATGCGT	ref_6064_new	22	44	12	21	37	13	49	10	40	13
ACTAGGGAGCACCTGC	ref_6064_new	57	75	65	40	99	39	76	46	90	52
GTACGTGAGATGAGTT	ref_6064_new	67	118	72	72	94	53	111	52	116	52
GTGAAGGCATCATCCG	ref_6064_new	9	25	11	9	15	15	17	13	25	14
AGGAACCGCTTCTGGA	ref_6064_new	0	0	0	0	0	0	0	0	0	0
TGTCCCGACGAGTAGG	ref_6064_new	39	47	55	39	61	32	58	23	87	23
CTGGACACGTTAGATT	ref_6064_new	0	0	1	2	2	1	3	0	1	1
GCAATCGTAAAGTCCG	ref_534_upstream	24	26	26	16	19	21	24	33	22	20
TATATGGGTACCACGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGGATAAGTCGCT	ref_534_upstream	11	17	15	12	14	21	11	4	14	10
GCATGGATGTCCCGAA	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCTCGGGAGTTTG	ref_534_upstream	46	46	64	41	39	49	57	53	64	43
GCCGTTTATTCCTTTA	ref_534_upstream	18	15	22	31	19	16	32	24	33	25
CCGCCTTCTAGTGGGT	ref_534_upstream	2	7	5	1	11	1	11	3	15	0
CCGCAACTAGCTCACT	ref_534_upstream	20	26	25	33	30	14	28	20	17	10
TTATAATCTGATCTGG	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGCAGCCATTGGG	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
AACAATCTTATTTGTC	ref_534_upstream	40	34	40	45	19	26	27	20	38	30
TCTAATGCACTTCCTC	ref_534_upstream	9	7	11	6	6	10	12	7	8	9
AAGATCATGGTGTCAT	ref_534_upstream	94	74	103	103	81	90	88	73	87	79
GGAACTTATGAGTCTA	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGCAGAGTTTGGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ATATTGTTGCGTAGGA	ref_534_upstream	62	40	57	43	45	51	51	43	56	46
CAGGGTTCGTCGATTC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTGGCCTGCAAAT	ref_534_upstream	164	142	204	141	119	130	128	133	125	104
TCCTTCAGTTATAATA	ref_534_upstream	36	31	34	33	34	24	45	26	33	32
TGCCCTGTGCATGCGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTCGGTTACTCC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TAGGAAGCAAGTGTAT	ref_534_upstream	122	103	153	132	114	98	115	117	152	113
CATACTCATATGTGGA	ref_534_upstream	15	18	26	6	12	12	14	10	13	25
TTTCGACGTAAGGTTA	ref_534_upstream	42	44	63	39	51	46	57	38	41	29
TTGTGCTTTGCTAACA	ref_534_upstream	83	97	76	76	75	75	98	62	115	56
ATTTCGGTTAGGTTCC	ref_534_upstream	3	2	0	1	1	1	2	1	2	1
TAGCCAGAAAATTCCT	ref_534_upstream	7	13	11	5	10	5	9	11	9	6
GGCTAATTCTTCCGAT	ref_534_upstream	47	29	42	32	36	55	44	28	41	38
GTCCACGATTCAGCCG	ref_534_upstream	7	6	16	6	12	10	16	6	14	9
TTGGTAGCCATCTTAT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
AATGCCGGTTGTGCCC	ref_534_upstream	60	41	60	38	43	30	30	52	45	40
ACGGTGTGAAGTAATC	ref_534_upstream	23	19	18	19	27	18	16	23	21	27
TAGTATGCTTTAACAC	ref_534_upstream	12	18	12	13	21	15	26	29	17	15
GTTCGTTTTTCCGGTT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCTACCGTGTATT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GTAGATGAGCCCGCTG	ref_534_upstream	11	6	12	17	7	7	13	8	12	8
CTTTCAGGGTTGAACC	ref_534_upstream	0	4	8	2	3	4	6	3	5	0
ACAGTTTCGGTACGTT	ref_534_upstream	26	47	49	32	47	35	48	24	56	31
TTTCTTACGTAATCTC	ref_534_upstream	40	31	49	37	34	36	33	37	25	26
TGGGTCTTGCGTATCG	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GGACGAATCTTGTAAA	ref_534_upstream	50	25	47	37	29	33	30	24	30	22
CGCGCGGACGTATATA	ref_534_upstream	10	3	8	10	6	17	9	6	7	8
GTCGGAACTAATGTCC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTGGTGTATTCC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
AGTATCATTTTCTGGC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TTATTAACGGCCAGGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTTCTCAGGCACA	ref_534_upstream	26	26	33	30	22	25	32	22	22	17
CTTAAACTTTCGGTGG	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTTTGTAATACGC	ref_534_upstream	28	36	24	31	27	28	22	18	22	22
TTTGCTTTTGTCTTTT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
CAGTATTATGCTTTGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTGCTCGCCTTGG	ref_534_upstream	17	10	10	22	17	20	13	19	10	22
CGTTGTTCCATTTTGC	ref_534_upstream	15	11	18	11	17	6	11	17	6	14
ACTGGTGCTCATCTTT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTTTAGTTAAAAC	ref_534_upstream	37	25	37	29	18	35	22	32	43	22
GACGATCAAAGGTTAA	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGTGCCCCGCGCC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TAAATATTCTTATATA	ref_534_upstream	299	262	377	324	279	261	295	264	291	277
AATGTGTCCTGATTGG	ref_534_upstream	27	15	19	11	20	8	17	27	18	16
CGGTTTGTTACCGATC	ref_534_upstream	66	47	81	63	54	57	52	51	57	50
TCCTTTTTCGACGTTC	ref_534_upstream	98	98	90	100	122	84	100	98	111	79
ATCCTTCGCTTTCTGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTGTCTGACGGAT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TCGTACTGTTCACGCG	ref_534_upstream	104	104	139	102	133	107	112	96	101	91
CGTAAGTGAGCCCGCA	ref_534_upstream	6	9	11	8	9	6	6	6	5	11
GGGTGTCCGTTTTCGT	ref_534_upstream	92	82	136	90	88	88	84	97	80	81
TTCCGCGACTTCTCGG	ref_534_upstream	133	101	155	129	112	137	126	117	120	121
ATGCAGTTCGTCCCCT	ref_534_upstream	30	34	36	34	54	40	49	42	49	43
CTTCAGGGTTTCCTGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCTTATGCTGTC	ref_534_upstream	232	186	270	203	178	231	176	238	194	208
GCAATGGGCGCAGTAT	ref_534_upstream	19	17	13	13	11	9	13	12	10	9
ATGGTCAAACTTTATA	ref_534_upstream	16	14	24	20	12	12	18	10	20	10
TGTCTCGCCACACCCC	ref_534_upstream	24	15	30	18	25	12	22	11	17	17
TATGTTTTGTGGTTCA	ref_534_upstream	21	25	31	28	22	27	18	19	15	14
AGAGTGCTGTTGGTGT	ref_534_upstream	13	29	21	11	15	6	23	17	14	17
GAATTAGGACATGGCC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GTATTATTGTTCCGCT	ref_534_upstream	24	14	29	27	26	16	23	20	17	22
TCTGTGCGGCATTTTA	ref_534_upstream	9	12	28	21	11	15	11	14	17	14
ACGTTGTCCTTGCACA	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
CCTCACGATAAGGTGT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCAATGGATCATT	ref_534_upstream	2	7	8	5	7	6	9	6	6	5
ACTAACGTTCGTGTTA	ref_534_upstream	29	30	38	27	29	34	21	26	24	24
TTTTATTTCGAGGCCC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCGTCTACCATAT	ref_534_upstream	8	9	9	7	5	3	8	5	7	4
TCGTGCCAATATATCC	ref_534_upstream	26	21	35	14	23	18	18	33	20	11
ACATTCCGCTTTAAAA	ref_534_upstream	85	48	77	76	75	84	68	73	89	65
TGTCATCCTCTGGTCA	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GCGTACCAGGTTATCG	ref_534_upstream	5	8	11	8	4	10	5	5	10	7
CATTGGATGCATGCTG	ref_534_upstream	4	5	3	2	4	10	7	3	1	2
AAACGGAACTCCGCCA	ref_534_upstream	83	60	102	103	69	94	64	93	68	78
CGTACAATATAAGTGT	ref_534_upstream	27	26	25	22	25	22	22	20	15	19
GGAAAGTGATAAAATT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
GTCACTAACTCGTCTC	ref_534_upstream	73	62	81	65	49	64	57	53	67	55
CTATCACACTGGACTT	ref_534_upstream	0	1	3	3	4	1	8	2	3	3
CACAGAACCGTCCCCC	ref_534_upstream	41	32	58	52	18	34	52	44	32	31
GAACGGAGCTATCATA	ref_534_upstream	10	5	16	10	9	11	8	11	7	13
ATGTTCCTGCCTGCGG	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCCCAGAGTGCGA	ref_534_upstream	4	5	5	2	5	1	5	2	5	2
ACTCGGGCGCATCTCA	ref_534_upstream	9	16	16	11	7	2	14	7	13	6
CCGTGCTAGTATGCCG	ref_534_upstream	13	12	12	5	9	11	7	9	8	7
ACATCCTTATCCGGGG	ref_534_upstream	31	14	19	24	6	18	20	5	17	7
CTGTTAACACGTCGCA	ref_534_upstream	311	316	395	342	373	263	365	297	382	289
ATGACGCAAGTATATT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ATGGAGCACAGGCAGG	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ATATAGGCCCCCGTAT	ref_534_upstream	59	43	69	49	42	47	44	34	53	23
CGCGGATCGCACCGGG	ref_534_upstream	30	23	43	31	26	29	34	25	27	38
TGTTCATGTCGGACGG	ref_534_upstream	66	61	83	73	76	55	77	51	74	72
ACGCTCCCATTTTGTA	ref_534_upstream	2	13	2	5	10	8	12	2	29	3
TTTATTTTTGCTTATC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTCATCCACGTTT	ref_534_upstream	7	6	7	9	9	13	8	7	8	9
TATGTCTACGTGCGTC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGCCCGTACAACA	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTACATTTTTAC	ref_534_upstream	1	11	8	6	8	9	11	5	5	8
CAAAAGAGCGTGTAAG	ref_534_upstream	8	4	7	7	7	8	9	4	6	3
TCCATGTCTCATTCTA	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TCTCACTCGCACCTGT	ref_534_upstream	0	1	0	0	4	1	0	1	0	1
AGAATTCTATAAGTCA	ref_534_upstream	36	30	28	39	21	27	25	26	25	16
ATGGCTGATTCTACGG	ref_534_upstream	17	11	18	11	16	13	14	21	14	12
GATTTAAAGTTCGTAC	ref_534_upstream	44	58	68	55	68	53	50	37	49	35
GGCGCGCAGCAGTATT	ref_534_upstream	5	5	5	3	7	4	6	6	5	5
TTGGGCTGTACGGGTT	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTCTTACTGCTAG	ref_534_upstream	95	105	114	96	114	73	100	96	108	83
ATGCTTCGCATGAGCC	ref_534_upstream	22	23	22	26	16	28	23	16	21	31
TCATCACCGGTGAAGG	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ATGTACCATCTAGAAC	ref_534_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCCGGCATACTA	ref_534_upstream	1	9	2	2	8	2	12	4	11	3
TGTGGGATTAAGTCGT	ref_534_upstream	19	35	38	26	25	29	25	29	34	24
AAGCTCTCCGTGCATC	ref_534_upstream	4	3	8	2	4	6	7	9	5	4
TATTCAAGCTATTTAT	ref_534_upstream	37	34	35	34	45	42	41	28	38	35
TCACGCTGTCGATTGA	ref_534_upstream	46	44	52	50	56	42	46	61	61	37
ATATGATAGAGTTCTC	ref_534_upstream	42	37	49	35	33	34	36	33	39	37
TGTGTTGCAAAACTCG	ref_534_upstream	1	9	7	13	5	5	7	10	14	8
GGCGCCATTTCCACCG	ref_534_upstream	40	24	55	30	44	31	33	40	24	43
AGAGGGGTGTCTTTGC	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CTATTCAACCACAAAG	ref_2558_fdr	40	87	60	37	78	50	96	53	106	35
GGTTCTCTCTAAACTA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CGTGAGTGCACTTATA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CATTATGCAGGTATTG	ref_2558_fdr	5	19	7	14	28	8	12	8	16	12
TGCTCATTTGTTGTGT	ref_2558_fdr	28	44	49	30	35	40	64	45	65	49
TGTGTTATCGTCCTAT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TCGATTCCAGTCCCTC	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCGGGCCAAACTT	ref_2558_fdr	31	29	24	21	36	10	43	23	48	14
GGTATTTGGGACGGTG	ref_2558_fdr	147	160	163	120	190	123	206	176	239	109
GATCATCATTCGCCTG	ref_2558_fdr	26	38	30	16	34	29	27	21	49	24
CCTCGTTCGTTAGTGA	ref_2558_fdr	9	28	17	20	31	8	32	7	22	9
TTCCTGTACCGCATTA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGGTTTATCGGTA	ref_2558_fdr	105	142	112	114	139	88	121	88	138	86
TCTTGCGCTATTCAAC	ref_2558_fdr	51	92	73	72	102	54	97	61	115	58
ATGGATACGAGAAAGG	ref_2558_fdr	19	26	24	18	28	25	23	11	42	22
AATTATAATCTGGCCT	ref_2558_fdr	24	19	16	10	23	13	18	22	21	18
GGACGTACGACCGGGC	ref_2558_fdr	19	29	39	23	28	17	41	24	44	20
GCCCTATCGCTGATGT	ref_2558_fdr	16	23	10	9	22	12	16	15	22	4
ATCCTATCCGTCCCAC	ref_2558_fdr	12	19	14	5	15	10	14	13	11	15
CGTTAGTTGACGTCAT	ref_2558_fdr	1	1	3	5	6	2	7	3	6	2
CTCTTATTTTACCAAC	ref_2558_fdr	12	18	8	15	13	7	27	11	18	13
CCCAATTTGGCTGTGA	ref_2558_fdr	11	27	17	16	19	6	23	15	24	10
CATGCAATCGTGCAGT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CTCACCTTCCAGTTTC	ref_2558_fdr	19	18	22	10	23	25	21	15	25	10
TAGCATTAACGGGACT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
ATATCGGCTGCCGTTA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCACTGTATTTCT	ref_2558_fdr	1	1	1	0	3	0	2	0	6	1
ATGGTGCAGGGATTCT	ref_2558_fdr	73	59	53	56	63	80	102	62	96	43
TTCTTGGTTGACATTA	ref_2558_fdr	6	14	11	13	16	8	14	8	16	6
TTTTCACGCTTCAAGT	ref_2558_fdr	26	40	32	24	35	20	34	28	48	23
AATCGTGCCAAATCTG	ref_2558_fdr	11	6	3	5	8	7	11	6	16	3
CTTGTTACGGCTTCTA	ref_2558_fdr	23	44	21	24	40	26	38	18	51	13
ACTAACCCTTGACAAA	ref_2558_fdr	3	2	6	1	5	5	6	4	7	2
GTATCAAGTGTTGGGC	ref_2558_fdr	77	141	111	91	97	88	152	73	144	73
TCTTCGGTAGCGTCTT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCTGTTGGAGCTC	ref_2558_fdr	3	0	4	3	2	1	5	2	4	2
AATGGGCTCATACGAT	ref_2558_fdr	43	60	66	54	56	64	59	41	74	48
TTGTATCGAAAGTCCA	ref_2558_fdr	9	13	8	5	7	5	11	9	14	7
CCCCAGCGAGATAAGG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTTGGGTCCGTGC	ref_2558_fdr	55	61	38	32	60	40	76	25	63	33
GCATCTATGTTTTGGA	ref_2558_fdr	25	42	25	30	41	13	35	15	41	33
TTAATATGAGACGCTC	ref_2558_fdr	16	31	17	22	30	18	30	13	33	19
CGTTGTTTTTCGTGTG	ref_2558_fdr	9	20	17	12	16	10	16	19	13	8
CCTGCCATTACTCTAC	ref_2558_fdr	28	62	45	29	68	22	61	32	75	40
TCACTTATCTAGAACA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTAGGACGGTCCT	ref_2558_fdr	18	21	13	26	42	8	22	17	13	18
GTTTTCGGCATGCTGA	ref_2558_fdr	45	50	37	22	44	33	52	25	55	36
ATGATTCTCTGCCTGG	ref_2558_fdr	9	13	18	14	22	17	20	14	23	8
TGTTTGTGTTTCCCTG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTCGTTTCTAGC	ref_2558_fdr	29	49	37	31	46	28	50	22	59	32
CGAGTAAGATGCATTG	ref_2558_fdr	0	1	5	1	5	0	4	1	2	1
TATACCTGCTGGGATT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAGTCTCTTTTAT	ref_2558_fdr	15	23	16	11	20	10	23	9	31	13
ATGCTACGTCGGTCCG	ref_2558_fdr	7	20	15	7	25	14	23	14	23	11
AGACTTCAGTTTTGTG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGCGCACGTTCAT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGGAGCTTTAATC	ref_2558_fdr	10	25	26	13	23	20	23	5	32	9
AGCCTTTCCTCCAGCT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
GGTATGGGTTTGCCCT	ref_2558_fdr	21	23	24	20	32	20	37	14	30	20
TATTATGTTATAGTGT	ref_2558_fdr	2	4	5	7	3	4	5	9	6	7
AATTCATATATGGATG	ref_2558_fdr	13	21	20	12	14	12	24	8	23	15
CACTAGGGTTTTAGTG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGGTTTCTCATGA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGCCGACCCGCAA	ref_2558_fdr	6	5	8	5	6	8	3	8	9	2
CAATTGACACATTTGC	ref_2558_fdr	10	16	9	5	16	13	12	11	15	11
AATGGGCAGGTTATCC	ref_2558_fdr	16	17	25	13	20	7	17	8	21	15
GGCGAGAGGGCGCCTT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGTTGTCGGTCCG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCGTTGGGTTAGA	ref_2558_fdr	6	18	15	12	12	5	16	8	20	10
CGGCCGACTAATACGT	ref_2558_fdr	35	68	48	40	89	54	70	47	86	35
ATCAATCCATATCAGA	ref_2558_fdr	67	77	106	63	90	49	98	58	112	72
TTTAGATGTTATTTGA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCTTAAGGGTACT	ref_2558_fdr	12	9	17	10	22	8	25	10	20	11
TCATATCGCATGTATT	ref_2558_fdr	47	43	30	34	48	30	49	24	55	22
CCAGGTTCTCCTTCTG	ref_2558_fdr	81	124	74	76	102	64	116	63	138	57
TCCGAATGGTTATGAT	ref_2558_fdr	5	8	1	13	5	2	3	4	6	5
GAGGTATACTCCGCTG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGATCCGATCTCA	ref_2558_fdr	19	22	21	15	34	22	44	16	48	18
CGTTAGCAGACTGTCG	ref_2558_fdr	7	7	1	7	8	5	8	4	10	2
TCCTTTGTACGTAATT	ref_2558_fdr	50	61	76	57	59	55	57	40	83	44
CATGATGTCATTAAGT	ref_2558_fdr	8	30	8	11	14	15	15	11	12	8
GTATAGGGACTGACCG	ref_2558_fdr	9	11	3	5	10	8	19	10	10	6
ACTCAGACCTCCATTC	ref_2558_fdr	0	0	0	1	0	0	0	0	0	0
TTAGCCTGGGGCTTGA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTGTTTTGGCAAA	ref_2558_fdr	41	49	25	29	64	35	87	27	75	28
CAAGTATTACTGGTAG	ref_2558_fdr	0	0	0	0	2	0	0	0	2	0
TGCGCTTGAAACTAAG	ref_2558_fdr	4	9	8	1	5	6	14	1	11	7
GCATATGTTTGCCGAT	ref_2558_fdr	15	23	16	8	34	14	16	17	25	20
CGACAGCTTTTTAAGG	ref_2558_fdr	8	23	10	10	31	10	22	14	9	7
ACTGTGTTGTTCCGAA	ref_2558_fdr	7	6	5	3	7	8	8	4	7	3
AACAATCCATATCAGA	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CCCCCACCATAAGTGG	ref_2558_fdr	0	0	0	0	0	0	1	0	0	0
ATTTAGTCCGGTGCAC	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
ACTGAATTAACTTTCA	ref_2558_fdr	18	26	30	16	36	20	24	16	22	16
GGCAACGTCTCAAACT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGCCGGTGCCCTT	ref_2558_fdr	15	33	10	13	31	10	39	10	35	12
GACCGATATAAATTGC	ref_2558_fdr	5	21	20	9	11	9	18	13	18	12
TCAGAGCCTCCCGGGG	ref_2558_fdr	32	63	53	41	57	38	73	45	54	41
TATGTGGCCGCTCCAC	ref_2558_fdr	36	47	38	34	46	34	46	37	70	24
GCTGAGGAGGGGTGGA	ref_2558_fdr	15	31	26	24	20	25	33	22	27	16
TTTTCTGTTGCCTATC	ref_2558_fdr	19	13	19	18	27	14	34	9	31	16
CCCGTCTGTGCCGCTC	ref_2558_fdr	18	19	5	14	16	10	14	14	24	11
GGTTATTGTAAACCAC	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TACAGTTATGTTTCAC	ref_2558_fdr	11	31	18	14	22	11	14	16	24	11
TTTTCTTCATGGTTGT	ref_2558_fdr	21	19	29	28	25	20	31	26	32	21
CCTTATGCACTGCTTG	ref_2558_fdr	11	22	19	18	20	16	25	12	26	12
TACTATTACTCTTCCA	ref_2558_fdr	29	38	38	31	49	38	46	30	56	19
ATTCGTCAGGCTACGG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
GACAAATTTGATATTG	ref_2558_fdr	26	32	31	29	41	36	40	35	47	23
GGAAATACTGTCTGCT	ref_2558_fdr	27	50	46	36	65	31	64	39	57	43
TGTTGGCATCTGTTAT	ref_2558_fdr	18	21	21	15	39	23	39	15	37	21
TACTGCCGGGCCCGAT	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAAATCTCCTTTG	ref_2558_fdr	2	3	2	7	4	3	2	3	10	1
TTGTTAGCCGTCTCTC	ref_2558_fdr	20	28	32	18	22	25	45	16	18	23
CACCGGGTGCACCCTG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCCGGGTATTTTG	ref_2558_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTCGTAAATACTT	ref_2558_fdr	31	36	24	31	42	33	48	25	48	21
CTAGCGCTTAGTCGTT	ref_2558_fdr	14	14	21	11	26	10	30	22	40	17
ACCATATTGTCATAGA	ref_2558_fdr	6	17	10	13	10	11	22	9	18	9
TGACGTGGCTCTGGAT	ref_2558_fdr	82	106	92	81	104	48	126	60	102	72
TATGTGGGCCATCATG	ref_2558_fdr	36	46	37	29	45	35	44	31	62	30
TAATCGTTCCCGACTG	ref_2558_fdr	9	19	27	22	33	10	28	17	30	16
CTCGTGGGTGGGTAAG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GGGCCATGGCTGGCGC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
ATCGAGCACCGAGTGC	ref_6104_new	0	1	1	3	2	0	0	1	1	0
ATTCCATCGTTACTTG	ref_6104_new	22	53	31	36	56	27	50	22	58	31
TTCCTGATGTTACGGA	ref_6104_new	23	70	27	27	54	30	53	27	59	36
GAACCCTCTGGACAAC	ref_6104_new	15	41	31	17	39	11	43	17	50	19
CAATTCCCGCTCGACC	ref_6104_new	6	21	5	13	26	4	18	4	31	6
ACGTGTCTTCTCTATT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
CTTAGAGTGCCCATGT	ref_6104_new	7	29	22	15	33	13	37	10	33	13
CTAACAAGGCTCTCGG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
AAACGGGCTGACTGTA	ref_6104_new	11	21	10	5	17	3	30	5	17	5
CTGCGGTTCCCGAAGG	ref_6104_new	3	13	12	8	17	10	14	4	26	10
GCTATCCGTCTGGAGC	ref_6104_new	1	3	4	1	4	2	6	3	5	1
GTCTCAATTCAACTAA	ref_6104_new	6	14	4	3	19	4	15	7	13	2
ATGATGGTCCTCGCCC	ref_6104_new	9	20	13	10	16	10	36	9	20	9
TGATTGCACGATGCCT	ref_6104_new	12	28	23	25	48	30	52	20	44	22
GTTGTGCTGAGTAATA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GGTGTCATCGGATTGG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TTAATCGAATTTTAGG	ref_6104_new	75	118	80	60	100	84	130	81	158	58
TGGGAGCCGGCGGCGA	ref_6104_new	15	22	12	10	23	8	34	6	22	9
CGCTCGAGCTGCCCGC	ref_6104_new	7	12	6	1	0	2	9	9	3	4
TAACGATATGGTGGGT	ref_6104_new	1	4	2	1	5	0	5	0	11	3
TGGCACCAGTCGGTCC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GGCACGTCACATATGA	ref_6104_new	3	11	11	7	14	3	14	8	17	7
ACGAAGCTAGCGCAAC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TTGGTCACAGTTTACC	ref_6104_new	22	47	26	23	61	21	60	23	59	24
GCTCTTCGGCAATGGT	ref_6104_new	6	9	10	3	10	3	11	14	12	9
GTTATAGACTTTAGGT	ref_6104_new	4	3	4	2	12	4	10	6	11	5
AAGAAATCTTGGGCGG	ref_6104_new	8	9	5	10	8	4	6	2	24	7
AGACGACCACGGGAAC	ref_6104_new	3	8	2	5	13	9	9	2	2	5
AGTGGTGGTAAACATG	ref_6104_new	14	31	21	16	29	17	40	18	34	17
GCACTGCTGAGTAGTC	ref_6104_new	11	22	15	17	33	12	32	13	22	14
AGCTTTTAGGGGCTCC	ref_6104_new	10	24	8	10	17	12	15	19	16	12
CGCTCTTAGCTTCCAT	ref_6104_new	4	6	4	2	3	2	4	3	3	2
CATTAATATGCTCGTA	ref_6104_new	0	2	5	1	4	3	9	0	10	0
CTTTTTTTTTCTGTAG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TAACTACACTATCGAC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GTTACCGGTGTATCTA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TAACGTCTACAGTTAC	ref_6104_new	3	6	0	1	5	0	5	4	4	3
CCTCGGTCCACTACAA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GCGCCAAACGGTAACG	ref_6104_new	21	23	12	9	25	9	20	8	21	8
GATAAATCGTCATATG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GTCTCCCGGTCTAGTC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TGGCGGTTTAATGCCG	ref_6104_new	9	30	14	7	39	10	39	15	44	18
ACCTGGATTGGCTACC	ref_6104_new	9	20	12	10	23	7	42	11	25	7
CATCCGCGTCCAAATA	ref_6104_new	10	11	5	4	11	2	17	1	2	2
GACGGATGGTGGCAAT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
AGATTTCCACTTTTTT	ref_6104_new	45	61	72	46	69	39	64	53	78	40
GGTTAACTGAGGTATA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
CTCTAGGTTATCATGT	ref_6104_new	2	13	12	6	17	3	14	4	16	6
GAGTGTGTCAGGTTCA	ref_6104_new	18	40	27	15	37	20	43	16	53	15
GCCAAATCTCTGGAAT	ref_6104_new	18	35	19	19	60	16	36	21	52	18
TATATCGTATAGCCCG	ref_6104_new	27	32	14	17	50	22	52	20	41	12
ACAGTTCGGGTGGTCT	ref_6104_new	38	76	30	46	69	46	78	40	76	30
TGAGCTCTACCCTGAC	ref_6104_new	4	5	6	7	6	4	5	4	8	2
GAGTTATGAGATCGCA	ref_6104_new	7	37	22	15	20	12	26	19	34	12
TAGCTTTTGGGTCAGT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
CTTAACGCCGCAGATC	ref_6104_new	41	83	61	40	80	38	112	42	110	26
CAAGGGCTCCCACCAG	ref_6104_new	16	35	17	15	25	13	30	12	24	11
ATCTCTTTCACTGCGC	ref_6104_new	40	67	39	35	68	48	79	43	57	25
TAACATTTCCTTCTGG	ref_6104_new	170	203	203	188	251	185	279	165	263	147
TTGAGCTGTTCGATTG	ref_6104_new	21	57	23	18	56	24	44	13	37	17
AGATTCTACACCTCTT	ref_6104_new	16	19	12	9	22	12	24	14	14	11
TAGTCCCAAGCTCAAC	ref_6104_new	9	18	8	8	30	5	18	7	14	6
GGTCAGCTAGGGGACT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
ATGTGACAGCTACATT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TAGGGTTCTGGAGGAT	ref_6104_new	18	66	29	28	43	34	53	34	54	32
TTTGCTACATTCCGAC	ref_6104_new	3	7	3	1	5	3	8	1	4	6
GTGTCCATGTTCAGGG	ref_6104_new	5	11	13	4	15	12	14	5	18	8
CTGAATGCCAGGGCCG	ref_6104_new	12	13	16	7	14	6	7	7	22	3
CCAGGTATGTCCGCGT	ref_6104_new	21	47	24	19	52	19	68	20	49	13
TAGGGTCGGGAATTCC	ref_6104_new	46	68	35	46	78	28	69	34	74	42
CCACTGTTTAAAGCGA	ref_6104_new	27	64	33	33	77	24	75	19	55	15
AGATGTACTAAGTGCT	ref_6104_new	6	9	6	3	16	3	23	4	16	5
TTCAAGCTGCTCTGTC	ref_6104_new	2	10	3	8	7	6	13	1	11	1
TGCACGCGCATGTGAA	ref_6104_new	23	50	29	18	48	32	39	19	52	29
TGTTGGAAAGCAATAT	ref_6104_new	26	68	52	27	90	37	84	34	98	41
GGCATACTGCAATAGC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GTCTTAGCGGTGGAAT	ref_6104_new	3	5	4	2	6	0	3	1	8	2
CCAAAGGCGGTAAGCA	ref_6104_new	7	16	11	6	22	11	24	7	28	6
TGATTTGGCCCCCGCT	ref_6104_new	12	40	16	30	51	25	43	31	39	17
GAGTAGCCGGGCCTTC	ref_6104_new	22	47	28	7	61	29	56	29	47	16
GGGCATCCACCCATTG	ref_6104_new	0	2	0	3	1	2	0	1	2	1
CCATTTTAGTGGTGCT	ref_6104_new	29	83	54	52	73	40	91	38	97	34
CCGATGGGCAAGTCGG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GGCAGCAAACTTCCGC	ref_6104_new	21	39	22	23	31	27	34	13	47	26
GACATTGTCGGCGAAT	ref_6104_new	5	6	2	1	6	0	1	3	3	2
GACCTTGTCGACCTTC	ref_6104_new	16	16	14	5	12	4	22	8	25	10
TTCCTGTTCGGCTGCT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
ATCGATGCCTCAGGGT	ref_6104_new	16	47	24	20	42	22	38	21	58	13
ATCAGCACTCTTTAAG	ref_6104_new	10	15	5	4	18	1	19	12	26	5
GTTCGACGCCTATGAA	ref_6104_new	39	103	51	36	82	47	91	33	99	32
GACCCATGTGGGTTTG	ref_6104_new	25	42	30	24	31	23	60	24	37	21
GGTAAAAGCCCGTTCA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
ACTCCTTTGCGTTGGG	ref_6104_new	3	25	8	4	30	1	34	6	34	10
GTGGTCCTTTGTATCA	ref_6104_new	11	29	11	19	25	20	38	11	34	14
TCTGCCCTTCGCTACT	ref_6104_new	30	62	41	32	67	36	74	29	64	31
CCGCCCCCACATAGGT	ref_6104_new	13	22	12	23	22	20	25	5	39	18
TAGAGTACATCACGAG	ref_6104_new	10	27	6	11	18	9	30	13	22	8
GGCTGGCCAATGTTTA	ref_6104_new	6	14	12	8	17	8	16	11	16	8
TTTTGCAGTTTCTCTA	ref_6104_new	36	72	42	19	77	34	64	23	93	23
CGAGTATAGCTGGCCT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TAGTGTAGTTATCCCG	ref_6104_new	13	28	18	21	28	20	39	15	27	18
CGAATCTATCTTTGGC	ref_6104_new	6	19	11	9	19	5	14	10	18	11
TGTTTTGTGACCGCCC	ref_6104_new	1	5	8	3	1	3	0	2	2	1
TTGATTTGCGCCCGAT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GAAACCGTTGCGGCCT	ref_6104_new	28	42	37	41	54	31	57	34	63	25
AGTAAATTGAACGATT	ref_6104_new	23	48	26	25	50	26	58	24	49	20
GTGCCAATCCTGACGC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TTATTGCTGTTGCGAT	ref_6104_new	55	90	53	42	71	73	103	56	112	38
AGATAATCAGCGTGTG	ref_6104_new	14	10	3	11	9	9	18	3	18	5
CGTCTTTACGCCGTCC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TCAGAGTGTTCCCGGT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TGCAATGGCATTCCAC	ref_6104_new	22	36	26	16	48	23	49	9	57	20
TGACTTATTGAAATAT	ref_6104_new	5	18	12	2	25	7	23	10	30	8
TCATCGGAATCTTTTA	ref_6104_new	38	81	40	24	100	56	75	32	83	31
ATTACCTGCAACTCGG	ref_6104_new	22	71	35	27	73	26	63	22	76	28
GCTTAAGGTAACTCAC	ref_6104_new	12	57	18	26	57	17	47	14	60	17
CATTGAAGTATGGACA	ref_6104_new	12	13	13	10	21	6	21	7	21	5
AACGGGACCTTATAGG	ref_6104_new	0	2	1	2	6	1	6	2	3	4
ATCAGCAGCCACGTAA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
AACACACTTAATTCGC	ref_6104_new	19	27	12	25	27	14	33	16	36	9
AACCTATTATATCGAA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
ATGAGTATAGAGCTCG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
CTTATTATGACAGCAT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GTAATCGGGGAGGCTA	ref_6104_new	4	10	18	13	8	10	4	14	12	13
CTATTAGCACTTCTTT	ref_6104_new	4	10	9	3	12	2	8	2	10	4
GACATCTCCATTTTTC	ref_6104_new	58	87	62	59	89	59	89	51	88	51
ATTGTGGATGTCGCGG	ref_6104_new	5	20	15	14	15	11	24	8	28	8
TTAGACTGCAACACTG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TGGCGATTCTCGTCGA	ref_6104_new	6	12	12	11	10	4	19	9	19	9
TTGATCTCGCGTGAAG	ref_6104_new	31	61	49	23	53	36	50	32	62	20
CGGTTTTCTTGCATGT	ref_6104_new	8	12	8	5	11	6	10	11	13	2
ACTCGTCTAAGGCTCG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TGGTGGTGAATGGCCG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
AATGGTGGCTTTACAC	ref_6104_new	10	33	15	11	28	15	31	9	24	13
GGCCGTGGGTCTGGCT	ref_6104_new	47	75	49	40	85	20	96	32	97	31
TGGCGCTGCGCATCGG	ref_6104_new	6	19	13	12	17	10	31	7	22	8
TCTCTGATGATATTAT	ref_6104_new	9	19	12	17	29	13	23	6	33	11
TCAATGGTATCCGTCC	ref_6104_new	17	24	26	17	37	24	42	14	48	7
ATGAGGCTGCCTTGGC	ref_6104_new	19	21	14	7	15	8	16	11	24	11
CTATCATGGATATACA	ref_6104_new	8	19	5	4	19	5	23	4	25	6
GTTCGGTAGCGTCGAG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GGCGATCCTGACGGTC	ref_6104_new	25	39	27	25	42	16	43	34	47	25
TCGGACTCCTGTAGCT	ref_6104_new	15	24	17	7	37	8	37	13	44	11
CACCGATCCATTATGC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TTTCATTTCGTTATGC	ref_6104_new	41	58	50	28	77	21	52	34	83	27
CAAGGTTGCACCAGGA	ref_6104_new	49	53	41	41	76	36	60	36	68	40
CTAGGAAATTTCATAG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TTGAAATTGGGAGCTG	ref_6104_new	6	19	7	7	17	13	19	14	15	5
AAAGCCGCGTTCACAA	ref_6104_new	11	17	17	6	19	4	14	5	10	8
ATGCAGCTTGGTATGC	ref_6104_new	7	11	10	4	18	12	17	10	24	9
CGATGGTAACTTTTAG	ref_6104_new	89	146	117	92	168	99	200	82	227	82
TGATAGACGGCTTGTG	ref_6104_new	4	12	2	5	10	4	15	1	4	2
TCGATTGGTAACACCT	ref_6104_new	12	12	15	8	15	9	18	13	29	9
GAGCGCTCTTCGTGCT	ref_6104_new	91	206	147	111	225	98	220	93	252	99
TGTGGTTTATCTTATT	ref_6104_new	18	20	11	15	20	6	8	10	14	17
CCGTGAGTTCTAGAAC	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GGAGAGTAAGAATTGT	ref_6104_new	13	29	23	23	24	17	39	23	33	13
AGCCGGACCTTAAATC	ref_6104_new	11	20	16	15	23	12	23	8	32	8
CAATTGACCTCTCTTC	ref_6104_new	3	8	9	7	7	4	6	4	4	2
GGTTATCAACGACTCT	ref_6104_new	5	17	15	8	9	8	22	6	17	5
CTATATTTCAAAGTAA	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GACAACGCAAGTCAAG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
CATGAAATTCTCCCCG	ref_6104_new	0	0	0	0	0	0	0	0	0	0
TGGAGATCACATCGGA	ref_6104_new	3	9	4	3	4	2	6	5	7	2
CTTACACACGGTGCGG	ref_6104_new	3	8	3	4	13	3	5	0	8	1
ATTGTCACAAGAAAGC	ref_6104_new	5	32	17	13	18	10	27	13	27	14
TGTCTTTCAAACGTCA	ref_6104_new	1	3	3	1	2	2	7	0	3	2
TCACTTACTCGTATCG	ref_6104_new	41	88	45	41	86	30	93	40	91	31
AGTATTTCGGGTCGTC	ref_6104_new	10	11	4	9	7	15	19	8	8	3
TTGGTTCGTTCGGTGT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GTGTATGTCACGTTGT	ref_6104_new	63	88	69	56	119	52	82	42	109	39
CTATGTGATACAATTC	ref_6104_new	13	30	10	14	29	15	42	10	55	8
TCTTTTGGGTTCACCA	ref_6104_new	18	56	19	17	47	21	46	18	35	26
AGAAGACAGGCTGTAT	ref_6104_new	0	0	0	0	0	0	0	0	0	0
GTGTACATATGCCCAA	ref_6011_new	0	0	0	0	0	0	0	0	0	0
CAGGCTGGAGTACCTA	ref_6011_new	23	43	27	28	50	15	26	20	38	18
TCTATGTCCACTGGCT	ref_6011_new	16	30	38	25	40	17	45	28	39	15
TGTTCGTAAAGTACGG	ref_6011_new	22	27	28	15	33	25	39	20	40	21
TAAGTCTTGTGGTGAT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
CGGTCATGTCACCTAA	ref_6011_new	53	80	70	75	87	47	77	56	63	43
AGGTCTCCAAGCCGTG	ref_6011_new	26	41	31	26	40	22	33	24	46	28
CGATCAAACATTAATA	ref_6011_new	6	16	18	10	15	12	17	12	19	21
CAGTGTTAGGTACGGA	ref_6011_new	18	23	18	11	26	18	26	13	30	11
TCCAGGGCAGAGCTAA	ref_6011_new	3	3	2	0	3	3	4	5	4	0
ATTGTTTGCGGAGAGC	ref_6011_new	40	66	51	47	70	47	58	36	61	28
GTGCATTTAGGGCTGA	ref_6011_new	69	68	65	55	85	53	81	44	91	47
GCAAAACTTGTGCAGC	ref_6011_new	21	25	21	19	35	15	19	16	44	24
TATTCCTACACATACT	ref_6011_new	15	25	25	17	35	17	21	8	33	21
CGTGCGGATCCCGAAT	ref_6011_new	17	17	23	5	12	20	19	9	22	12
TTTCTGCACACCTCTT	ref_6011_new	310	332	351	315	384	302	430	266	494	268
TCTAGGTCAGTGCTTT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCTCCAGGTTT	ref_6011_new	40	33	30	24	33	15	34	17	37	17
ATTGGCCGCGTTTGGT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
TTTGGTAATATTTCGT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
GCAGCCCGGAGAGTAA	ref_6011_new	70	66	87	78	104	72	108	84	108	68
CCAAGGTGCAATTCAG	ref_6011_new	48	39	58	48	56	39	56	41	62	36
TGCGTGGTAGTGTCAC	ref_6011_new	101	135	125	98	123	93	137	70	145	75
GGGATACCAGGTTTTC	ref_6011_new	0	0	0	0	0	0	0	0	0	0
CACGCGGGCTACTATA	ref_6011_new	34	28	22	29	37	29	39	27	41	30
TGCACCAAAATTGCTT	ref_6011_new	19	16	21	10	20	7	20	12	17	12
CGATTGATAGCTTTTC	ref_6011_new	72	87	93	68	115	73	96	68	74	60
CTGGTCGCGTCGGACT	ref_6011_new	3	4	5	3	7	2	6	6	3	2
CATAGGGCTGGTCCCT	ref_6011_new	13	23	8	13	9	17	8	12	9	4
AAGGTATCCCGTTTAA	ref_6011_new	0	0	0	0	0	0	0	0	0	0
TATCAATCGGGGGCTC	ref_6011_new	124	131	152	141	127	109	123	124	131	93
TTCATCTGCTCACCTC	ref_6011_new	0	0	0	0	0	0	0	0	0	0
GGTTCCGAATGGACCA	ref_6011_new	23	28	33	24	40	21	25	12	37	17
ACATTTTACCTTCTCA	ref_6011_new	45	69	46	50	62	34	61	46	80	42
CAACCCCATATTGCTC	ref_6011_new	22	49	21	22	62	19	61	30	69	26
ACACCTCAGAAGCATT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
TTAATTCACTGGCGAA	ref_6011_new	17	20	23	13	18	20	20	16	16	17
GTATTATCGGTCAGTG	ref_6011_new	1	2	3	2	2	3	3	1	6	3
CGGGGGCCGCACGACA	ref_6011_new	37	58	59	45	72	39	43	49	62	31
TCCTACCCAAGACAAG	ref_6011_new	4	6	6	6	11	5	6	1	7	0
AAAAAATGCATCGAAA	ref_6011_new	21	17	12	17	11	17	26	11	20	8
TTCATTCCGTGTATAT	ref_6011_new	26	34	34	49	38	27	47	26	27	16
CGCGAGCATTGGATGC	ref_6011_new	45	65	60	43	68	53	76	48	73	48
GATGCCATATACTTGG	ref_6011_new	38	67	69	67	70	48	83	53	104	43
ACACCTGAGCATACGG	ref_6011_new	25	20	23	20	26	21	25	15	26	21
CACATGATCGCTATGC	ref_6011_new	31	47	27	30	43	8	45	14	49	19
GCTATCGACCGCGATC	ref_6011_new	52	82	75	56	80	56	83	51	98	49
GTCATATTGATTCTTG	ref_6011_new	37	37	40	30	28	43	33	35	31	24
CACCTTCGTTTGTGAA	ref_6011_new	61	64	72	45	72	64	82	60	81	61
GATATGAAGTGAGAGT	ref_6011_new	5	5	18	12	10	14	15	4	5	4
CACGTAGCCTACCTGC	ref_6011_new	39	46	47	24	44	31	39	28	29	31
GACTTCCCGACACTCA	ref_6011_new	4	5	9	8	2	4	8	6	11	4
GATCAAATCGTTCTAG	ref_6011_new	0	2	3	2	1	3	3	0	2	1
TTACGCACTTACCTAT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
GGGCATGGCACCTCAC	ref_6011_new	7	5	20	10	12	7	6	7	17	3
TTTCTTCTGTCAAGTT	ref_6011_new	105	128	126	89	117	129	115	108	115	88
TAGGCCTCTTGAGGGG	ref_6011_new	18	13	14	11	17	11	11	16	16	15
CGACCGGATCCGGCTC	ref_6011_new	0	0	0	0	0	0	0	0	0	0
CCGTACTGTCGGTTTT	ref_6011_new	9	10	11	9	9	13	13	10	11	3
TGTTGTACGATTATAA	ref_6011_new	0	0	0	0	0	0	0	0	0	0
CTGGCTCCTCCGGAGG	ref_6011_new	16	29	34	37	38	22	21	18	38	24
CCGCCGTGCCTGGACC	ref_6011_new	0	0	0	0	0	0	0	0	0	0
GGCAGTGATACAAGGT	ref_6011_new	109	103	97	93	76	98	116	65	104	82
TCCACGCACTTACTCA	ref_6011_new	7	3	0	2	9	7	13	6	3	6
CACGTTGGCACCCTCT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
ACGTTCACTCTGACTC	ref_6011_new	17	15	13	17	24	11	12	18	19	6
TCTTAAAAGCTTTAAA	ref_6011_new	82	120	108	90	104	96	126	92	130	82
CCATCTGATCTTTGCG	ref_6011_new	0	0	0	0	0	0	0	0	0	0
GATGAACGCCAGTTGC	ref_6011_new	85	89	69	78	75	72	98	73	87	68
CAGAACAGGGTTACGA	ref_6011_new	20	10	11	10	10	16	14	7	13	3
TGGTTCCATGTTTTCA	ref_6011_new	0	0	0	0	0	0	0	0	0	0
GATTATGCGTTATCTA	ref_6011_new	48	75	47	68	68	51	75	50	61	47
CTCAAACATACCACAA	ref_6011_new	59	128	74	51	142	62	152	57	155	50
TACGGTGGTCTATCTA	ref_6011_new	89	104	128	92	128	89	137	89	119	94
TCCTGTAGAGGCCATG	ref_6011_new	0	0	0	0	0	0	0	0	0	0
TTTGCATGACTTCGGT	ref_6011_new	0	0	0	0	0	0	0	0	0	0
ACCCCAACGACTATAC	ref_6011_new	0	0	0	0	0	0	0	0	0	0
TGGCAGACTCCTGCTC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTTGCTCTTCCTC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
GTTAACGTAGGCGTCA	alt_3117_upstream	88	18	122	97	20	100	42	98	28	75
TTTTAAATGGTTGCTT	alt_3117_upstream	134	40	164	172	43	147	31	156	43	152
TATGCTCAATCACCAC	alt_3117_upstream	231	55	275	220	69	233	51	239	69	220
GTCCCCCACATTCGTT	alt_3117_upstream	108	27	99	112	20	104	23	125	28	79
GCGACGTCTATGGTGT	alt_3117_upstream	101	57	171	143	46	112	34	107	46	118
GTGCCAGATTCCAGTT	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CAACTATGTATCATCG	alt_3117_upstream	181	49	270	235	60	198	56	214	61	166
AACCAAGAGTCCCGCC	alt_3117_upstream	353	124	403	387	145	309	114	351	137	278
ATCACCAAATCTCCCC	alt_3117_upstream	738	217	880	815	258	713	272	689	280	610
CTGCGTTTAGTTTGTT	alt_3117_upstream	111	52	177	153	74	149	46	154	61	104
TCCGCATAATGCGCCC	alt_3117_upstream	99	43	146	110	44	87	42	72	25	98
CATGACTTTCCTCGCC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGTGCTTTTCGCG	alt_3117_upstream	226	62	257	239	86	188	56	186	60	211
ATTAGCTCGTACGAGG	alt_3117_upstream	274	54	334	298	77	257	69	234	58	228
TCCCGGCTTTTCCTTG	alt_3117_upstream	70	12	62	48	16	53	14	51	14	48
CATGACTTTCCTCGAC	alt_3117_upstream	993	317	1152	1028	348	966	329	1019	358	913
CCGATTTTCCTTAAGG	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
GACGCTATCGTACCCG	alt_3117_upstream	251	75	300	294	90	231	93	230	91	204
CCAGGCCATCGAGCAC	alt_3117_upstream	115	32	115	88	34	101	30	87	45	86
CTTGAGGCAATCTATC	alt_3117_upstream	265	84	338	296	96	270	88	263	78	273
GCCAGATCAAACCGCG	alt_3117_upstream	119	51	168	166	46	120	40	129	53	132
CCTTGGGGACCCGGTA	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CTGAAACGTTGCAACC	alt_3117_upstream	68	16	82	63	9	55	30	77	18	58
TCCTTGTGCGAAAGTT	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGAAGCGTCGCGT	alt_3117_upstream	240	53	300	265	72	219	73	225	75	233
AATGGCAATCTCTGCG	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CATTCGCACTTTCGAC	alt_3117_upstream	49	18	57	77	7	65	24	58	13	59
ATTACAAGATTGATGA	alt_3117_upstream	480	132	575	536	134	450	144	481	109	450
ATGTTCCCTTTTGATG	alt_3117_upstream	187	75	225	224	71	208	71	160	67	134
TCTTGCACCACTGTCT	alt_3117_upstream	132	45	163	133	46	104	50	137	41	127
CGATTACACGCAAATG	alt_3117_upstream	181	46	223	219	41	183	58	171	33	197
TGGCATGATATTTTTT	alt_3117_upstream	57	9	73	47	18	50	15	49	18	50
TTGGCTAGGATGGGGC	alt_3117_upstream	472	122	594	473	123	433	138	512	147	431
CTCTACTCTCGACGTT	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CAGACATTCAATGCAT	alt_3117_upstream	22	6	23	18	7	25	3	29	4	25
CGTACAATTTGTCCCG	alt_3117_upstream	10	1	12	12	2	4	3	10	1	8
TATTTTCAACAGAATA	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGATCCCTTGGT	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
GTATACTGCATTTTAT	alt_3117_upstream	361	78	415	386	106	334	87	334	97	312
AGTCCTGCCTCTGGAC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
ACTACGTAAGTTCTGG	alt_3117_upstream	95	14	128	115	20	86	34	96	28	93
TAGTGCGCGATGTCCC	alt_3117_upstream	251	63	370	289	88	276	78	308	89	252
CTCTGCAGGCAGTATA	alt_3117_upstream	70	15	72	64	26	57	25	84	18	49
TTTTTTTACATTCTGA	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGGCATAATAAGT	alt_3117_upstream	98	37	93	78	19	70	28	92	35	89
AAAAATCTGGTTAATC	alt_3117_upstream	43	17	36	49	15	28	19	43	16	35
TGGCTGATCCGTGATT	alt_3117_upstream	219	57	206	193	33	170	61	157	47	167
CGCCATGTTCGCAGCG	alt_3117_upstream	29	3	50	39	14	24	6	34	8	21
CTTAGTATTTGCCTCG	alt_3117_upstream	231	63	277	220	77	222	70	224	76	197
TGGCAGCCTCGATCCC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
ACTAATGGCGTAGTTG	alt_3117_upstream	257	57	324	279	54	227	59	225	56	215
ATCACAAGTAGCAATT	alt_3117_upstream	336	96	458	412	94	361	88	389	104	358
TCAGGGGGGTCTGGGC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
TCATCGCGTCATTAGG	alt_3117_upstream	122	43	175	135	46	100	50	123	42	119
GTTTCGTTATTCACCT	alt_3117_upstream	165	36	193	188	51	166	45	194	49	171
GGAATGTCCTGTTCTA	alt_3117_upstream	110	34	163	141	35	129	38	130	35	134
TCCAGAAGGGCAGGCT	alt_3117_upstream	119	36	135	117	42	120	38	106	35	105
AGAACACTGATGTAGG	alt_3117_upstream	106	34	124	119	27	99	33	100	33	106
CGGGGCCCTGGAGAGG	alt_3117_upstream	30	3	31	27	9	25	5	24	9	28
TACTTCCAGGATAGGA	alt_3117_upstream	90	24	117	87	26	78	31	96	26	71
CGTCCTTATGAGGTCT	alt_3117_upstream	172	44	244	204	49	175	55	149	58	186
CCATTTAGTTTACTGT	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CGACAGCCGCCGCACC	alt_3117_upstream	182	55	234	201	38	177	57	228	71	173
TTCTCGTTCATCCTGG	alt_3117_upstream	30	11	49	28	10	48	10	29	8	26
CCATCCTATACGTTGC	alt_3117_upstream	82	88	129	114	83	92	91	93	102	72
AGCGATAGGTTATAGA	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCTGTCTTCGGAC	alt_3117_upstream	322	147	414	373	185	347	171	342	175	305
TTCGGCATTAAGACCA	alt_3117_upstream	84	22	118	110	25	93	40	112	23	93
TCTCGATTCTTGCAGC	alt_3117_upstream	351	98	519	457	99	402	107	344	104	358
CTCGCGTATCCCTTCC	alt_3117_upstream	280	87	368	275	71	271	81	281	93	277
GAAAGCATTGCGGGCA	alt_3117_upstream	219	51	252	252	56	226	65	221	49	190
ATGGAACGGACGACTA	alt_3117_upstream	192	43	214	202	53	189	34	137	43	138
GTAGTTTTGTCGCGGT	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
GCATACGTCTGCGGGA	alt_3117_upstream	183	60	284	284	56	176	60	241	52	159
TCATGTGCTTGTGGCT	alt_3117_upstream	44	4	41	32	17	29	14	36	10	35
GGTGGGGCTTTACTAA	alt_3117_upstream	37	11	28	33	9	34	8	26	5	32
ACGACTATTTTCTTTC	alt_3117_upstream	542	153	637	602	157	533	167	441	139	479
CAGTATTTTCTTATCT	alt_3117_upstream	278	94	346	289	99	265	93	293	94	230
CTACTGAGGCGTCGCA	alt_3117_upstream	304	91	442	354	91	311	121	295	76	270
GGAGCCTAGGTCCTTA	alt_3117_upstream	681	215	831	774	233	675	198	650	236	578
GGGTATTTTGACGTAC	alt_3117_upstream	109	30	168	127	26	123	41	121	41	101
TCCATTGGTTGCGTTC	alt_3117_upstream	13	16	15	15	12	13	14	16	15	14
AGCCGTGGCCGCGTTT	alt_3117_upstream	0	0	0	0	0	0	0	1	0	1
ACAGTCATCCGTTAAC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCGCAGGATATC	alt_3117_upstream	0	0	0	0	0	0	0	0	0	0
CTAATGTGATCGTTCC	alt_3117_upstream	88	20	117	96	21	58	18	79	17	80
CGACTAACTTTGCATC	alt_3117_upstream	368	96	487	405	126	375	113	372	92	360
GTTCTGCACTTCCGCC	alt_3117_upstream	351	87	398	333	115	293	109	316	87	297
TTCAGCACTTTGTCTC	alt_3117_upstream	88	36	108	107	30	77	63	93	30	82
ACCGATGGACAAATAT	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTTAATAAAAGTT	alt_618_fdr	289	243	358	301	217	275	227	291	226	252
GGTTCCGCAAATTGCG	alt_618_fdr	20	12	16	15	7	11	10	12	9	9
CTATAAGCGCGTGAGA	alt_618_fdr	82	52	93	74	54	58	53	64	62	50
TGTCAATTCTATCCGT	alt_618_fdr	50	56	69	53	53	52	52	52	43	55
CGGCTCCCATTCGAGC	alt_618_fdr	18	13	16	20	15	13	14	15	17	15
TTTTCCGTTGTTTAGC	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTTTATGGCTTGG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
ATACAACGGGTTTTTA	alt_618_fdr	67	74	80	78	50	52	74	72	63	66
ACGAGTTCTGTCCGGG	alt_618_fdr	79	81	116	81	62	98	73	96	50	90
CCCGTAAATTGTCTGG	ref_618_fdr	12	10	4	6	6	10	6	6	7	7
GTCCGGGTAATGCTCG	alt_618_fdr	114	55	110	88	69	97	78	89	78	82
GAGATAGCTACTGTTG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CGACGTGGTGTCAGGA	alt_618_fdr	54	56	78	87	48	68	58	64	61	66
GGCGAAGATACTTGAT	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTACCTGCAGTGA	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
AAATCTGTCAGTATTT	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CTATTGGTTACTCCAT	alt_618_fdr	27	31	41	27	29	21	29	22	23	37
CAATGAGTCGCCACAG	alt_618_fdr	10	2	16	12	5	17	7	8	9	13
CGTTCATTAATCGTTC	alt_618_fdr	38	25	38	33	20	29	30	33	22	34
TATTTATGTGATCGCT	alt_618_fdr	19	23	29	22	8	24	21	23	19	13
TTAGGCGAAAACTAAG	alt_618_fdr	68	77	113	103	65	91	59	68	99	79
AGTCGCTGATTGGCTC	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTACTCCTTTCGG	alt_618_fdr	48	36	66	51	59	49	34	47	29	40
ACCTTTTTAACTTGTC	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCCCCGCAATTAT	alt_618_fdr	31	16	22	20	14	17	20	24	29	22
GCCAATTGAGGACAGT	alt_618_fdr	42	25	63	45	32	51	36	36	37	42
GCTGCACGATTTTGTG	alt_618_fdr	3	5	3	5	2	3	4	3	2	1
TTTCGGGGGAGGCTTT	alt_618_fdr	7	6	8	3	7	12	3	10	13	9
CGTTACGGTCTATAGC	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCCGTTCGTCCGC	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGGATTTTCGTTC	alt_618_fdr	61	34	71	66	46	75	37	65	55	54
GTGACCCCCGTGGGCA	ref_618_fdr	64	33	61	87	45	49	47	59	38	50
TTTGGGGTCCTATTTT	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CTGATCTGTGGCTTCC	alt_618_fdr	54	32	45	43	31	42	26	41	35	40
GTTCTTCGTTCTTGCA	alt_618_fdr	6	10	16	12	8	13	7	9	6	12
TCCAGCGTGGTTGGCC	alt_618_fdr	14	3	11	10	3	7	3	9	3	7
AGCTTTGCCTCAGTGC	alt_618_fdr	11	2	15	11	9	13	9	12	3	7
TGTTGTAAAGAGTTGG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CACCAGGTACGTCGAA	alt_618_fdr	23	16	36	27	25	25	26	19	22	23
AGATCAGCAGCCCCGC	alt_618_fdr	48	47	72	47	38	51	38	45	26	36
GTTCGAAGCTTTGCGA	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAGTTGTAGTCAG	alt_618_fdr	24	12	23	23	17	11	16	23	23	18
CCCTACGCAAAGAACG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CGACAGGCCCCGTCTT	alt_618_fdr	80	51	96	67	37	65	58	53	50	58
GGTCCTATGGAAGTGA	alt_618_fdr	213	137	283	256	157	240	168	208	157	237
GCCTTTTCTTCCGGGT	alt_618_fdr	50	53	53	46	72	44	70	65	73	73
AGATCAGCACAATCTC	alt_618_fdr	15	13	27	23	5	28	11	25	11	10
TTCGGTGGATGACTTT	alt_618_fdr	44	32	64	36	18	34	34	40	39	33
GGATGCTAGGGCGGAC	alt_618_fdr	35	35	45	57	34	42	24	47	40	44
GTCTGGAGCAACAATT	alt_618_fdr	21	12	18	14	15	11	12	15	17	14
CTGCTTGTTGACAACC	alt_618_fdr	157	109	165	143	92	130	131	125	115	133
GCTGACTACTGGTACT	alt_618_fdr	28	20	28	33	21	22	24	29	22	31
TCTGCCTAGGTTAAGT	ref_618_fdr	121	103	127	121	124	130	108	111	94	106
ATACTGCCAAGGCCGG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
TCGCACTCCTGGGTTA	alt_618_fdr	31	51	34	35	48	46	47	24	54	33
CGTGGTTACTAAGGCT	alt_618_fdr	13	3	10	11	7	8	12	5	5	6
GTCCCGCGTATGACCC	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
ATATGCTTGCATGTTG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGGCCGACCCGTA	alt_618_fdr	22	16	30	32	13	29	18	24	13	28
TAAGAGGCTCGACATG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTAATCTCTGCAC	alt_618_fdr	83	65	99	79	62	72	65	71	64	74
AACTTAGCCGCGCCCT	alt_618_fdr	41	20	61	27	39	32	23	38	31	37
TCCGTGTTCTTAAGTC	alt_618_fdr	42	32	59	32	38	40	31	38	23	34
TTATTAAGTCAGTGTT	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGACCCTGGACC	alt_618_fdr	5	3	8	9	4	7	3	5	4	2
TGGTAGGAAATATATG	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CCACCTTTTAACGCTT	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTATCGTGTTCG	alt_618_fdr	30	27	34	29	19	19	22	22	40	29
ATTTCCCGACTAAGTC	ref_618_fdr	66	55	81	62	69	53	43	50	45	62
CCGAAGGCCCCGCTCC	alt_618_fdr	112	79	106	97	66	99	80	85	76	114
AAGTCGTGACACACAT	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGTTGGTCTCCCT	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
TAAACGGGGACAGTTT	alt_618_fdr	40	22	58	37	20	42	35	38	22	29
TATTTATCCTGGTCGT	alt_618_fdr	57	44	78	77	45	61	51	63	43	64
TGCGTCTCTCCGGCGG	alt_618_fdr	208	131	231	179	151	172	146	189	133	142
TTGACATCGAGCTTCA	alt_618_fdr	39	41	57	51	37	53	40	34	41	41
TAAGACCGCTCTAGAA	alt_618_fdr	0	0	0	0	0	0	0	0	0	0
CGTAGAGCGTTATGGA	alt_618_fdr	20	20	22	22	13	19	16	17	15	13
CAGTGTTGGACCTAAT	alt_618_fdr	21	22	36	26	21	17	13	21	19	20
TGCGGAGCACTCAGTA	alt_618_fdr	9	2	11	8	9	11	7	8	11	13
TTTAGACACCGCGTTT	alt_618_fdr	27	16	58	23	31	33	26	35	30	23
CTCTGGGCATAAAAAT	alt_618_fdr	242	173	315	225	199	243	170	209	171	229
CCCCCCAAGTTCTGAT	alt_618_fdr	44	27	40	36	23	24	31	36	19	23
CGCCCTGCACTGATCG	alt_618_fdr	18	4	24	13	8	13	9	8	6	12
GACTCGCCTTAATGCA	alt_618_fdr	35	25	47	30	27	25	38	41	29	37
AGCGTCAACCCGGTAA	ref_3143_RC	0	1	3	1	4	2	5	1	6	0
GTTTACTCGCCTGCCT	ref_3143_RC	30	56	19	24	51	30	50	21	52	27
ATTTTCGCAGGTTGTA	ref_3143_RC	15	37	28	21	33	18	22	16	18	16
AGGTACTCTAATACCT	ref_3143_RC	22	34	31	24	42	25	57	24	50	25
TTATCTGGTTTAGTAG	ref_3143_RC	83	119	79	90	124	68	109	62	146	64
TAAAAGCATATCACGA	ref_3143_RC	10	11	3	7	15	4	11	6	14	7
CTACGGATTGCTCTAG	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGTAGTGCTTAC	ref_3143_RC	16	34	18	14	49	8	40	7	51	6
TGGTACATATATAAGT	alt_3143_RC	20	16	11	9	12	12	17	10	24	10
TGGCGCCTTGCGAAGC	ref_3143_RC	43	100	78	74	98	56	90	63	87	51
AGCTCTGCCATTGGCC	ref_3143_RC	16	27	25	12	24	18	50	15	23	24
GTTAGGTGATTACGGC	ref_3143_RC	57	77	91	67	129	68	118	50	115	60
CGGTGCCAAGCCTCCG	ref_3143_RC	0	1	0	1	0	0	0	0	4	0
TTACTATACTTTTATT	ref_3143_RC	49	66	61	44	84	38	99	49	64	43
CGAGGGTTGGCGGTCC	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
GCTGCGGTAGGCTTTC	ref_3143_RC	21	70	40	44	69	40	79	32	78	38
CTCAATAGAACCAGCC	ref_3143_RC	76	172	101	77	217	79	211	101	212	65
TGTCCAACCACAGTCG	ref_3143_RC	2	16	5	2	15	10	12	7	28	6
GAGAGTTAGTTATCAC	ref_3143_RC	28	53	34	31	48	28	66	28	50	26
ATTAGTTTGCCCCTCT	ref_3143_RC	1	11	8	10	9	5	7	3	10	3
TCCCTTTAGTAAGTCA	ref_3143_RC	1	2	0	0	0	0	0	1	2	1
TCAGGAGGGTAAACGA	ref_3143_RC	24	32	24	22	30	17	40	29	33	20
AGATTTCAGTGGGTAC	ref_3143_RC	18	42	28	25	41	8	44	26	46	22
TATCGGCTCCCTGTTT	ref_3143_RC	12	20	13	11	27	12	26	12	27	9
GGCTGTGGGTTCCTCC	ref_3143_RC	20	33	29	23	39	14	57	33	44	25
ATTGCCGTCTAGGACT	ref_3143_RC	22	58	31	34	54	25	39	15	56	10
GGCCCCAGTCCTAACC	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
TTTCTCATTTGCTAGC	ref_3143_RC	83	139	102	74	119	68	118	76	123	75
TTGAACGGGGTAGGTC	ref_3143_RC	16	32	20	16	31	9	26	9	40	15
TATTTTTCGCTTCTGG	ref_3143_RC	9	27	12	11	22	7	26	13	21	8
TCTTTATCAACTTTTG	ref_3143_RC	28	31	23	23	33	21	32	20	26	21
TACGGGTATTACCACG	ref_3143_RC	8	13	14	13	17	8	24	9	23	9
CGGCCACTGCAGATAA	ref_3143_RC	42	34	49	49	54	29	70	37	72	31
CGAAGGGTGGACCCAA	ref_3143_RC	29	52	29	32	49	14	34	17	43	23
CTTTGTCAGATCTGTT	alt_3143_RC	118	204	159	129	191	119	232	95	244	103
GTCTGTATTACTTCTC	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
TTGTCGCCTGATGGTT	ref_3143_RC	48	46	51	44	65	39	50	35	80	37
GAAGAAGAGCCTAGTA	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
TCCCGCCCTGTCATTG	ref_3143_RC	39	57	49	41	74	50	61	29	63	50
GGCCCATCTATGCGGG	ref_3143_RC	21	27	9	3	24	18	32	13	28	20
CCCGGGTGGGGACCTT	ref_3143_RC	27	32	29	26	33	26	41	33	36	18
TGGACGTTCGGTTTGG	ref_3143_RC	14	26	25	16	21	11	23	8	44	15
CCATGTTCTTGGCAAT	ref_3143_RC	8	30	10	13	34	8	22	11	34	12
TTTGTCACATCGTCTA	ref_3143_RC	16	51	26	27	49	24	58	27	47	19
GGGGCCTACCGTTGAC	ref_3143_RC	30	54	59	34	72	46	74	48	90	32
TATCACCAACTACCCG	alt_3143_RC	84	110	77	59	121	64	107	54	122	58
TTGTTAGAGCAGTTTT	ref_3143_RC	31	62	48	38	65	35	65	36	78	35
GAGACTGCAGCGCGGC	ref_3143_RC	8	18	8	15	26	12	14	15	22	7
CCCATGCGTTTTTAGT	ref_3143_RC	19	30	35	19	23	24	41	23	44	18
CTCCGCCGATATACTC	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
GCAATTTATGTAATGA	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
TCCATTCTGCATGTCC	ref_3143_RC	0	0	0	0	0	0	0	0	0	0
TGCCTAACTGGTAGTC	ref_3143_RC	2	1	0	0	2	2	2	2	1	2
TGTATTTTGTATTTAC	ref_3143_RC	40	34	25	28	32	22	35	23	43	28
ATGTTCCGAGACCACC	ref_3143_RC	39	53	50	37	53	42	68	41	87	30
GAGGAGAGGCGTCTTT	ref_3143_RC	11	8	7	13	13	6	16	6	15	6
TCAGCGAGGTTGGTTT	alt_2443_negative	5	14	5	10	18	5	11	3	17	2
CTCAGAACGGGTATGG	alt_2443_negative	11	17	14	12	22	11	11	11	24	11
CGCGTTAAGCGAGCAT	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
AGATTAAGATTATTAA	alt_2443_negative	26	15	23	20	19	24	29	12	22	16
GATGACCTCACGGTAC	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
CAAACTCCGCATTGTT	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
GCATTCTTGGGTGATA	alt_2443_negative	73	89	68	65	91	76	111	59	110	76
GAGTCCTGTTGTGTCT	alt_2443_negative	37	62	86	77	82	59	102	51	96	55
GATACGTTATATAATG	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
TCATATGCCGTTATTT	alt_2443_negative	41	91	77	60	92	59	88	51	85	38
CGGCTCTGGCGCGCAC	alt_2443_negative	23	32	24	35	43	22	36	28	26	23
GCTGACTGAATGGCAG	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
TACTACGGGTCAAGTA	alt_2443_negative	35	57	45	51	53	42	72	28	51	35
GGGGCGATGGAAGCCT	alt_2443_negative	45	62	61	45	76	67	67	60	69	45
ATGTAGGGAACATAAA	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
CCACGCGCTCGGAAGC	alt_2443_negative	121	163	141	130	168	131	164	122	181	131
TATAGAATCGAGGCAT	alt_2443_negative	78	78	70	67	50	61	87	56	93	60
TCCTCACGATGACGCC	alt_2443_negative	7	1	6	3	1	5	2	1	4	0
ACTCGTCACCTGTCCA	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
CGACATTTGGTTCCCT	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
GGCTATACTAGAATGG	alt_2443_negative	61	93	82	45	78	68	117	62	97	50
CACCTTGTTGTTTCTG	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
TAATATTTGCGCGTCT	alt_2443_negative	16	16	21	23	21	15	25	14	21	12
CAAATCAACGGGGATC	alt_2443_negative	8	16	5	9	12	12	19	6	14	8
GATTCTTTTATCAATC	alt_2443_negative	6	10	9	9	11	7	14	13	16	11
ATCAAGGTTCCCCGAA	alt_2443_negative	27	36	42	29	46	20	43	23	40	32
CAGGAGACCGAACCGG	alt_2443_negative	7	10	9	6	27	14	13	11	17	9
TCTTTGTCCAGTCGAC	alt_2443_negative	58	86	59	58	67	64	77	56	68	53
CTTTTCATGGTGTCGT	alt_2443_negative	2	6	4	3	9	3	2	2	1	5
ATTTTACAGCTGAGCC	alt_2443_negative	2	17	9	9	17	7	17	5	16	2
TTACCTGGGTGTCATA	alt_2443_negative	4	91	11	9	100	6	107	2	83	3
ACTAGCCAAATGCCCT	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
GGTACTTCGAAACGGC	alt_2443_negative	3	8	3	2	11	2	8	5	7	3
CTATTAGAGCTGCTTA	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
CGCTCTGGGAGCCTCG	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
GTATTCTTGGGGCTCG	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
TTATGGTTACGCGAGT	alt_2443_negative	4	2	6	6	3	3	9	8	6	6
TTCCAGGTTCACGTGT	alt_2443_negative	48	69	71	49	73	50	80	41	95	60
GTGACGGATTCTAGTT	alt_2443_negative	31	31	28	16	26	12	41	17	42	12
GAAATGATTTGCGTCA	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
AAGAGTTACTTTACGC	alt_2443_negative	63	69	56	42	52	47	68	33	68	31
TTCGGATGCCGAAATC	alt_2443_negative	178	282	207	165	264	160	301	155	294	157
CAGGTCTACTGATTGA	alt_2443_negative	70	108	69	52	121	59	119	62	97	50
TTGTGCCATTCTATTT	alt_2443_negative	16	17	28	26	23	12	19	14	27	17
GCCTATTCTTGCTTCT	alt_2443_negative	18	29	28	9	23	14	39	19	26	22
GTATTATGATATTTGG	alt_2443_negative	5	12	14	10	11	12	12	13	14	9
GGACGGCTGCTGTCAT	alt_2443_negative	49	101	85	75	103	63	95	52	113	57
CCTCCCTTGTATGTCT	alt_2443_negative	47	56	40	27	42	28	51	28	55	31
TTCAGGTGACCCTGGG	alt_2443_negative	34	40	25	34	27	23	53	17	54	26
CGTGAATTCGCCTCCC	alt_2443_negative	41	60	67	39	72	31	71	28	76	22
TAGGCCTTGTCCGTCC	alt_2443_negative	3	1	5	2	4	7	1	3	4	2
ACAAACTTTATATTCG	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
TTGACAATTTAAGGCT	alt_2443_negative	13	25	32	25	20	21	35	11	37	20
GTCCGTCGACCCGCCG	alt_2443_negative	11	17	11	15	11	7	20	10	19	7
CCATGGGTGTTTGCTA	alt_2443_negative	7	13	10	8	11	7	13	5	19	1
GGCGCCGGGAACTAGC	alt_2443_negative	103	121	112	96	137	102	143	97	145	112
AGGCTACTGTTAGGTT	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
GAATCACTTCTGGGGG	alt_2443_negative	59	108	75	76	73	71	97	50	93	67
CGTTTTCTGATGTACT	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
GTGATTCAGCACATTG	alt_2443_negative	39	49	48	47	47	42	60	37	77	40
TTTTTGGCCAATGTTG	alt_2443_negative	0	0	0	0	0	0	0	0	0	0
GTTCATAGGCATGCGT	ref_306_reverse	7	7	12	12	11	10	22	6	11	7
GCCTGGCTGTGCATTT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CACCGATATCTCCCAG	ref_306_reverse	1	4	1	2	4	1	9	3	4	1
GCCTTCTGCCTCTTCC	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CGAATCGGGTCTTTTG	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTCTTAATCTGT	ref_306_reverse	1	4	1	0	1	0	2	0	0	2
AACGCAATGAGCATTT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCTAATTTCGAGT	ref_306_reverse	14	20	12	1	13	9	7	11	4	5
TCGGTGCTCGTCGAGG	ref_306_reverse	31	28	33	30	41	23	42	35	28	20
TCAGTACTTTTTGCGT	ref_306_reverse	3	2	1	0	0	3	1	2	0	0
TCATAATACGGCTTGC	ref_306_reverse	35	41	54	48	50	30	54	27	41	27
ATGTAGGTGGCTCTGC	ref_306_reverse	21	24	30	23	44	21	27	30	36	30
TTTGGGGCCCAACGTT	ref_306_reverse	41	47	31	37	44	27	53	30	59	19
GTTGTCACGAAACCCT	ref_306_reverse	23	21	15	16	14	11	15	10	27	13
ACATACAGAGTTGACT	ref_306_reverse	5	4	10	3	8	2	16	5	11	2
CCCGTTTCGTTTACCT	ref_306_reverse	18	44	18	17	24	18	37	26	36	15
GATATAGATTGGGACT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CCCCATTGGTCCCTGA	ref_306_reverse	2	1	2	0	1	1	2	0	4	4
CCTGGTTGATCAACCT	ref_306_reverse	42	50	41	45	66	52	89	37	80	37
GCCCAAGTGCAGGGCT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CGTTATAACCTGAGCC	ref_306_reverse	4	4	10	3	14	6	14	7	7	6
AAATACGTCATCTTGA	ref_306_reverse	39	37	48	32	39	35	43	35	45	23
CCTCACGGGTTGTGCC	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
TACTATTGATAGGCTG	ref_306_reverse	5	9	14	12	14	6	16	13	20	11
CAAATATTTAGTATCT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
ATACTCCGCTCCATGA	ref_306_reverse	52	77	64	54	75	52	87	68	70	68
GTCCACCACATTTTCA	ref_306_reverse	10	6	8	4	16	9	5	7	14	15
TGTAATGGGATGACGC	ref_306_reverse	209	241	265	210	243	199	245	212	235	174
CTGCCCTTTCTGCATA	ref_306_reverse	26	44	29	23	46	32	38	26	41	36
ATGATTAACTGGCGAC	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CAGTAACGATTATTCG	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTCAGATGTGGAC	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGATGGCAGCCCA	ref_306_reverse	7	2	12	6	7	6	2	8	8	5
TACTGTACACTTCATT	ref_306_reverse	9	23	17	10	22	11	22	13	28	13
CCGTCTGTGACGTTTA	ref_306_reverse	12	26	12	26	32	17	36	11	37	19
ATGAGTCAGTCTGCGA	ref_306_reverse	50	56	71	42	68	50	70	29	60	41
TCCCCTCTACCTGAGT	ref_306_reverse	22	27	26	22	47	21	46	29	44	15
ACGCATGGGTTAGTGA	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CGACTATTTCTTCGCA	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTGTGCATAGCCT	ref_306_reverse	13	19	14	12	16	15	22	19	23	16
GGTTAACATGCGCTCG	ref_306_reverse	43	53	40	38	53	41	53	30	52	25
CTCTCGGCGCCGCCGC	ref_306_reverse	35	41	46	40	44	32	47	21	43	25
CGAGATTCTCCGCAGC	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
AGCCAAACAGGAAGCA	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
AATGACCGTGCAGACT	ref_306_reverse	57	72	58	69	84	53	91	50	79	47
ACGTTGCCGCCCATGG	ref_306_reverse	1	3	0	1	2	4	4	1	3	3
AGGCACACGTACGCCC	ref_306_reverse	0	1	1	2	0	0	2	1	1	0
CTGTTCCAGTCTGGTA	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTACTTCGTTTTG	ref_306_reverse	12	26	32	18	27	14	13	16	32	21
TGTCTTGTGAAAAATT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
TCTGATTTTTGTTACC	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCCTTGTGCCGTG	ref_306_reverse	22	27	31	19	37	16	32	27	36	16
TATGCAAGCCCAACGC	ref_306_reverse	43	75	58	62	64	28	67	37	77	42
CCACAGAAAGTAATGT	ref_306_reverse	20	14	20	11	18	10	29	16	15	20
TGTATGGCTCTGACGT	ref_306_reverse	8	19	15	17	20	18	24	7	19	17
GTATACTGCAGCTCTG	ref_306_reverse	3	3	2	1	12	6	5	6	4	0
TAGGAGGCGCATTTCG	ref_306_reverse	26	44	30	29	40	17	38	37	36	26
TTACACACTCTGGGCC	ref_306_reverse	32	71	37	29	43	28	50	35	53	37
GCTGGCCTATCCATTC	ref_306_reverse	27	54	41	29	36	22	37	31	47	28
TCATTGGCCTACCGTT	ref_306_reverse	22	18	20	16	19	10	28	12	18	10
TGTCCCAATTGAGCTC	ref_306_reverse	9	12	18	10	14	5	15	9	14	1
GGCAAGTCTAAATTAT	ref_306_reverse	93	118	92	72	131	87	133	75	121	87
GTTGTTTCCTCCTTTT	ref_306_reverse	14	14	23	15	12	13	19	8	9	8
AACGTCTACTTGTCTT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
TGTCACTCGAGAGGGG	ref_306_reverse	35	54	56	33	53	27	62	30	51	29
GTTATTGGACGTGTAA	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
TACTCGAAAATGTCTA	ref_306_reverse	10	14	4	10	11	17	19	11	14	12
TATAGTGTTTGGCAAT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CAATTTCTGTCCGTCC	ref_306_reverse	0	4	8	4	9	1	14	0	10	1
CCAAGCTGAACGTTCG	ref_306_reverse	9	74	10	13	90	15	70	23	69	11
TGTTCGGGCTATTGGT	ref_306_reverse	3	11	10	4	6	11	7	7	14	8
GCTTCCACGTACACTG	ref_306_reverse	5	20	17	14	24	10	16	11	22	10
CTAGTGATCGTCATCT	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTTGAATCCTACA	ref_306_reverse	16	15	12	14	15	8	20	15	15	11
TGTCAGCGCTTGGAAG	ref_306_reverse	31	60	36	29	54	32	63	28	57	37
TCGGTGGCCTGAAAGA	ref_306_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCCTTCGTTCGCC	ref_306_reverse	18	16	22	24	21	18	19	22	27	19
CGCCTCGTTCCGTCCT	ref_306_reverse	51	83	65	56	77	43	59	37	86	57
GGGGTTTGTTGGTTAT	ref_306_reverse	1	6	0	0	2	3	3	4	4	1
GACAGTGTTGCGATTA	ref_306_reverse	31	37	37	25	41	30	37	24	36	26
ATTCAGTCCGTATATG	ref_306_reverse	11	10	8	7	11	6	7	6	10	7
CGATTCAGCAGGCAGT	ref_306_reverse	12	6	6	6	7	4	4	7	7	4
GCTCCAATTCTGGCCA	ref_306_reverse	15	19	18	14	19	18	24	19	34	6
TTGGAAAAGTAATCTA	ref_306_reverse	35	35	28	27	43	28	38	30	36	27
ATCCACAGTTAGGGTG	ref_306_reverse	175	214	207	169	238	200	242	161	250	167
GTCATAACCTTGCGTT	ref_306_reverse	66	69	89	63	74	73	76	53	88	50
GAAGCTAGGTCTCTAG	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGTTGCCTCATC	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
TCCCACAGGGGTCATC	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTTGATTATCCCT	alt_2169_upstream	24	21	22	28	23	19	22	26	24	15
TTCACATCGACCTTGG	alt_2169_upstream	308	370	327	275	427	220	407	274	387	246
AGCAATTCGTTATCTA	alt_2169_upstream	32	30	36	35	28	20	31	20	31	7
GGTAGTATGGCTTTGG	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
TAACATATCAGAATGT	alt_2169_upstream	19	23	22	19	28	10	38	13	38	21
ATGTTGGTCCCTTTGA	alt_2169_upstream	13	13	24	14	12	14	12	7	21	26
TGGTACCCTCTATCAG	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
GGAACAGACTAAGAGA	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
AGTGCGAATTTGCGGT	alt_2169_upstream	22	24	27	45	26	21	37	16	23	28
GGCAGGAGCTTTCTCT	alt_2169_upstream	43	56	62	39	36	49	62	42	56	45
CACTTAGTGAATGAAT	alt_2169_upstream	157	242	218	152	215	166	230	128	221	155
GCCTTGCAGTAGGGTG	alt_2169_upstream	31	59	39	36	51	33	50	32	43	26
GCATTATGAGTAAACT	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
GTTACTTGGCAGATCT	alt_2169_upstream	22	23	17	35	22	12	24	14	19	14
ATCGTCGCCTACTGTA	alt_2169_upstream	30	25	22	21	28	18	31	23	32	23
TGTTCGAAACGGATTA	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
CTTCAGTAGATTCCCT	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTCACTGTGACCC	alt_2169_upstream	3	9	7	7	2	5	5	6	13	3
CGCCCGGGTGATATAA	alt_2169_upstream	81	105	99	90	112	90	107	82	103	77
AGTGTTAGCTATTTCA	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
TCCATCATTGTCTCTT	alt_2169_upstream	25	24	24	24	32	29	23	15	29	18
CTTTCCACCTCACCTG	alt_2169_upstream	27	36	22	28	52	27	51	32	54	21
ACCTTGTTAGAATTAT	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGCTACGCTGATT	alt_2169_upstream	144	217	210	165	243	145	250	160	281	141
GGTACTGTCCTGAGTT	alt_2169_upstream	4	10	8	3	5	5	7	4	6	9
AATAGCCTTTTTATAC	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCTGCTGTTTCAA	alt_2169_upstream	105	110	112	120	108	118	149	104	131	104
TTTTTGGTACCGCAGT	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
GTATACGCCCTTTGTA	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCACGCCATATCA	alt_2169_upstream	109	99	131	103	112	105	113	97	114	83
GCATTGTGGTCACTTT	alt_2169_upstream	37	45	40	39	61	38	61	36	48	38
TTTGATAGGGTTCGGT	alt_2169_upstream	26	23	33	21	40	23	25	28	33	22
CCAGGGGTTCTTACCG	alt_2169_upstream	9	16	13	10	17	8	27	7	36	13
GCTGAGTCAATGGCTT	alt_2169_upstream	10	9	13	9	11	12	19	14	15	13
GGTCACGTAAACACTC	alt_2169_upstream	41	49	52	51	63	46	50	36	55	38
TGGGAGAATGTGCTGC	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
CACACATGATGAGAAA	alt_2169_upstream	8	15	9	9	19	12	13	14	21	13
TGACGCTCATGGCTGT	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
CCCATGTGTAGTCCCT	alt_2169_upstream	130	148	176	139	173	132	157	113	182	116
CTGTAGTCTTAGGCAC	alt_2169_upstream	5	9	9	6	12	11	6	4	15	8
CATGCTCGGCACTACT	alt_2169_upstream	25	46	25	25	27	24	41	22	40	32
CACTTAGAGAATGAAT	alt_2169_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTGTTTTTCCGGG	alt_2169_upstream	32	29	25	26	30	25	31	27	34	26
GAGTAAGTTTCGTCCT	alt_2169_upstream	2	0	1	1	1	0	1	1	0	1
GTCTTGTTCTGTTGCG	alt_2169_upstream	8	18	10	11	22	21	7	14	11	11
CAGCAGAGGCGCAAAA	alt_2169_upstream	19	26	30	31	37	33	47	29	32	20
TTGGATCCAGCTATGG	alt_2169_upstream	69	68	68	53	77	76	80	80	83	69
CTCATGTATAGGCCTT	alt_2169_upstream	35	38	18	18	33	17	29	25	26	16
GTTGTACATCACGCCG	alt_2169_upstream	75	82	92	65	103	69	77	68	105	57
CTTGGAGTACCCATAG	alt_2169_upstream	20	17	16	11	15	11	25	10	24	12
TTTGGCTCATTTTAAT	alt_2853_reverse	277	92	373	300	88	301	105	226	110	303
GCCTAGCCCATCAGGT	alt_2853_reverse	132	87	163	139	70	106	78	111	88	117
GACCATTTCACAAAGC	alt_2853_reverse	173	60	226	160	56	167	63	148	54	132
GGGTGCCGCGATGATC	alt_2853_reverse	221	76	270	228	79	224	65	186	89	191
TTTTCATGATTTCATA	alt_2853_reverse	71	36	78	91	27	86	39	85	26	64
TAGGCCATACTTACGG	alt_2853_reverse	9	8	8	12	9	5	16	7	7	0
AGTCGAGCCTGGGTCT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGCCAGGTGTAGA	alt_2853_reverse	476	149	530	508	185	454	168	425	192	446
GGCCAACTTAAGGGGT	alt_2853_reverse	282	91	320	263	115	301	113	229	115	220
TCTTTTAGGGTTCTCC	ref_2853_reverse	273	224	335	318	227	277	198	260	249	254
GATATTTCTCATGAGA	alt_2853_reverse	198	73	178	183	43	175	44	193	46	148
CACCTTTCGGACCAGA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CAAATAGGCTTCGCCT	alt_2853_reverse	0	0	0	0	0	1	0	0	0	0
TAGCGCAGGTTCTCGG	alt_2853_reverse	144	60	175	171	64	151	56	112	55	122
AAAATTGGGCACTAAC	alt_2853_reverse	54	18	61	65	16	65	22	50	16	44
GGCTTACACCTAGCGA	alt_2853_reverse	48	23	70	62	24	57	18	41	21	56
ATCAGACAGGCCGCCC	alt_2853_reverse	22	12	29	24	5	14	6	16	10	19
AATCCGCGGCGTATTG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCCGTATCAACGC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CATTGGTGGAAACGTG	alt_2853_reverse	184	78	268	199	78	217	82	192	92	185
CAATCTCTGATTCTGG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGTGAAGAACAATGAA	alt_2853_reverse	327	115	370	291	112	273	131	272	129	301
CTCCTGTGCGCGATTC	alt_2853_reverse	193	70	223	189	74	197	71	187	70	171
ACGTTGTCCCGGGTAA	alt_2853_reverse	164	56	212	186	87	201	86	187	68	171
ACTGGGGTAGTTGTGT	alt_2853_reverse	98	40	117	78	34	76	34	78	37	81
CTCCACAGAGAAATCT	alt_2853_reverse	147	70	200	174	60	163	71	175	57	175
GTGCTATAGTCTTGTA	alt_2853_reverse	27	17	46	41	14	30	14	36	15	25
AATCCCTGCGTAATTG	alt_2853_reverse	99	28	150	102	33	92	42	90	42	97
TTTTGGCAGCCCGTGC	alt_2853_reverse	400	122	408	391	108	343	132	357	110	324
CTCTTGGTAGTCCAAA	alt_2853_reverse	139	100	198	179	87	165	92	146	101	171
CTCCTAGTCTATTCCT	alt_2853_reverse	37	22	41	31	15	25	15	29	20	13
CATCTCGGCTGAGTAT	ref_2853_reverse	321	112	402	369	123	302	102	300	123	296
GTCCTTCCAGCACGCA	alt_2853_reverse	78	27	80	95	18	75	26	71	35	70
TTCCCGTTCGGATGCT	alt_2853_reverse	52	34	49	36	26	52	28	32	31	47
GAGATCATTCGCTCAA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTACTTTGCTGAGTAG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CGATTTGTGGGCTCCA	alt_2853_reverse	136	30	129	104	29	101	23	106	31	86
GAGGCTGTCCAATGGG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
ACAGTAGATCAGCCTT	alt_2853_reverse	60	22	63	43	19	58	17	36	17	44
ATGTGGAATATGTATA	alt_2853_reverse	10	6	18	19	2	10	4	11	4	10
ACGCCTCGAATGAGAG	alt_2853_reverse	158	64	152	154	44	115	64	138	68	130
TCGCGCCGTGACCTAA	alt_2853_reverse	56	28	49	35	23	34	25	50	26	50
CTCAACAGCATCAATC	alt_2853_reverse	29	15	30	22	7	25	8	21	13	17
TACAAATATATGATGC	alt_2853_reverse	104	40	134	115	38	132	39	109	27	96
TCCCATTTCCTGACCT	alt_2853_reverse	7	5	13	6	4	6	4	7	2	8
ACCCACTACACCCTTA	alt_2853_reverse	18	34	41	35	32	31	39	15	42	23
CACTTCGGTATTTCCT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGACGCTGTACTA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TACGTTACCCTCGTAC	alt_2853_reverse	23	14	25	26	16	21	21	26	14	22
CTTCCGAGGGCCTCGC	alt_2853_reverse	19	3	37	29	7	25	9	28	13	22
TATTAGCTCCGTTTAT	ref_2853_reverse	55	22	59	62	15	64	32	51	26	51
AGCGTCTACCGTTACA	alt_2853_reverse	113	43	151	170	51	156	49	123	59	122
ACTAGAGAGCTACGCC	alt_2853_reverse	16	7	15	14	5	5	11	7	12	13
CCACAGTTTTAAATAC	alt_2853_reverse	38	40	96	88	30	56	41	73	31	59
CACTTTCGTTTCCAAC	alt_2853_reverse	86	28	76	77	22	73	21	64	22	59
TGCCATGGTCTTTCTG	alt_2853_reverse	121	43	115	90	36	91	42	77	48	71
TTACGTGCCGTGGCTT	alt_2853_reverse	493	203	548	530	191	488	189	471	170	465
CGTCGCTGCGTTCCTT	alt_2853_reverse	32	8	41	31	12	32	6	26	16	32
TAACCGGTTCTCATTA	alt_2853_reverse	32	8	39	33	8	30	12	29	11	37
CAGAAGTTTTTGCATG	alt_2853_reverse	14	7	5	14	8	14	3	9	3	4
TATAAGAGTGTCCATA	alt_2853_reverse	202	64	248	200	62	189	78	197	84	159
AAGTTCCGTCTTTTAT	alt_2853_reverse	0	0	0	0	0	0	0	0	1	0
AGAGCGACAATTCGAC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGGACTGGACTGT	alt_2853_reverse	0	1	0	0	0	1	0	0	0	0
GACGGGCCAAGTACGT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CGCGACTCGCAGTGTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCACGTGTTCGATACG	alt_2853_reverse	144	52	132	125	33	113	42	97	50	119
GACGCACTTGCAGTTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TATCTTCGATGGCCAC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TACGTTGATTGGTGAA	alt_2853_reverse	196	68	232	208	86	186	86	212	73	182
CTCCATAGGCATAATA	alt_2853_reverse	274	104	289	304	101	272	87	258	98	253
CGTTTTGCGCTCTTTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCTCTGCTGATGC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGACTTTCGCGTTCCA	alt_2853_reverse	101	41	126	129	30	93	35	121	58	102
TTGCTGTCCATCCGAC	alt_2853_reverse	6	9	15	6	5	8	6	3	6	8
TGTGAACCCCTTCTAG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CATGTTAAAATCTTTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CATACCCAAGTGAGAG	alt_2853_reverse	27	10	34	29	12	38	17	24	15	21
GCCGGAGACTGTGGAA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCACCTTATCCT	alt_2853_reverse	140	70	180	143	48	169	69	151	67	155
TGTAGTCCGTTAGAGT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GCGACACATACGTCTC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TCCGAAGACTCCCCCT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTCGTTCGGCGTT	alt_2853_reverse	1	1	1	1	1	2	2	1	0	1
GTTTTGTGCACCACTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTGACCTGAACTTGCA	alt_2853_reverse	125	61	188	140	68	150	73	131	76	125
TAACAGGAGGCCAGGC	alt_2853_reverse	148	43	166	125	54	120	41	140	53	106
AGGTATTTCCTCGGAT	alt_2853_reverse	43	16	60	42	18	46	8	42	14	38
AGTCGGCTTGCCATAG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GCTCAGTCCTCGACGC	alt_2853_reverse	28	27	41	55	17	39	20	48	22	40
GTTCAGCGTGTTCACC	alt_2853_reverse	18	6	16	11	5	14	9	13	6	14
ATTTTCACGGATTCAA	alt_2853_reverse	82	40	123	80	32	98	35	82	38	108
TGCAAGACATTTGCGC	alt_2853_reverse	8	6	14	16	6	16	9	8	8	16
TACGCTGGGTTTAGTA	alt_2853_reverse	18	6	18	17	7	11	13	18	6	21
ATGTCTGCGGTGAAAC	alt_2853_reverse	12	8	22	23	5	16	6	7	3	16
CCGTTGACCTTCAACG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGTTATAGTGTCTGGA	alt_2853_reverse	110	61	152	143	64	120	49	115	44	128
CTATTGTGGGGGCAGT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTTGAACACATTACGC	alt_2853_reverse	8	7	10	8	5	9	5	5	8	6
CTTCAGGGCGCGAGTG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCTTTGAATGTTT	alt_2853_reverse	131	38	173	130	53	123	51	139	50	130
ACTCACGGTAGAGGAC	alt_2853_reverse	42	11	46	32	17	31	7	40	12	33
CAGTAATATCAACTCG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTGATTCTTAGGAGAT	alt_2853_reverse	206	61	229	202	72	189	68	153	85	176
AATTATACCCTTTGCC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTCATGCACCAT	alt_2853_reverse	450	186	608	480	170	440	183	460	183	452
TCGGCACGAGGTCTGC	alt_2853_reverse	71	21	70	74	20	76	16	76	36	72
ACTGGTGGACAAACAC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGGCGGAGGTCCA	alt_2853_reverse	69	23	101	83	26	72	28	67	27	58
CCTTCCCGCCTATCAT	alt_2853_reverse	31	28	34	34	34	15	34	16	38	20
ATCAAATGGGTCCATT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTATTTTAGGCCACTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTGTAGCACTGAG	alt_2853_reverse	189	60	249	202	91	195	85	207	63	157
GTGAACCGTCTAATCC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCGCGTTAAGGCG	alt_2853_reverse	132	60	181	140	59	131	64	117	56	118
TGGTTTGCTTTAGTAT	alt_2853_reverse	180	66	197	156	72	178	63	150	54	131
TCAATTTAGAGCGGTA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTGTCCAGCGCTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTCGTATTCCGCC	alt_2853_reverse	158	35	141	138	39	132	53	94	47	146
GCTGTTTCCTTCATTC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGCGTCTTGTGGG	alt_2853_reverse	32	14	31	37	5	32	8	23	9	18
CGGGGATTCTCCATTA	alt_2853_reverse	76	14	82	52	17	50	22	58	12	47
ATACGCGATCTTTCGA	alt_2853_reverse	48	18	52	45	11	63	19	44	18	45
CACAAGCGCTGTATCT	alt_2853_reverse	76	27	72	66	28	52	29	66	29	49
TGGTAATTACTTGGCT	alt_2853_reverse	307	137	408	340	132	333	138	320	136	291
ATGAGAGGCAATGGTC	alt_2853_reverse	25	14	56	54	10	61	11	50	12	45
TTGGCCAGTCACGCGC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GACCTCCATAGTTTTG	alt_2853_reverse	161	76	230	173	70	182	70	143	80	180
GTGGCTACGTGCACCA	alt_2853_reverse	146	59	225	161	55	133	56	148	61	164
AGAGAATGCCTGGTGG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCGGTAGCTTTGT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TCAACCCGCTTCAGAA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGTCCGTGTTTCCCTT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTTATGCCGTAGA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTTACTTGACACTTGG	alt_2853_reverse	63	32	73	66	25	61	20	68	23	41
GCTATGGGGTTCGGCA	alt_2853_reverse	68	15	81	75	23	65	29	61	21	70
GGTAAGAATCACTCAT	alt_2853_reverse	35	8	60	48	13	49	13	27	16	35
CCATATTGTCATTCAT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCCCGAAAGGCGT	alt_2853_reverse	48	16	56	53	16	39	21	32	10	49
GTACATCGGCCTTCTT	alt_2853_reverse	36	24	54	40	17	37	14	42	34	18
CCGGCCGCTACTTCGA	alt_2853_reverse	5	7	9	8	2	5	5	13	5	4
CACCTTATGCCAATGG	alt_2853_reverse	34	20	41	52	15	43	21	30	21	49
CGAGTCCGTTTGTCGT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
ACGTGCGTTTTTAATA	alt_2853_reverse	240	65	261	238	86	227	66	207	104	179
GAGTGCCTGTCTGTAG	alt_2853_reverse	28	12	35	37	17	26	13	19	15	36
TTTTCCCCTGATCAAC	alt_2853_reverse	40	7	40	27	16	27	9	23	7	27
TAGTTGCGTCCACCTG	alt_2853_reverse	31	17	39	20	16	38	10	30	17	30
TCAGGTTCTGCGCGTT	alt_2853_reverse	29	11	30	37	19	26	17	32	17	33
TGATAGTAAGGTCGAT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTTAACTTTCGGC	alt_2853_reverse	240	71	250	231	79	233	102	265	94	240
TACTATCTTAGTCGGT	alt_2853_reverse	60	19	51	57	16	57	21	68	16	65
TCGTTCTGGGTCTGGA	ref_2853_reverse	65	30	77	60	19	51	23	42	15	44
GTTCCTCGACTGTGCG	alt_2853_reverse	72	33	94	81	26	87	37	67	30	66
AGCCTACTTCCGATGT	alt_2853_reverse	275	76	274	188	98	212	113	209	95	194
TGGTTATCATACTTAG	alt_2853_reverse	39	20	78	54	23	37	17	37	15	39
CCTCTGATGGTGGCCG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCATCTGCATAGA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCTAAATTACAAA	alt_2853_reverse	210	56	241	195	75	173	55	146	72	168
AAACCCCTTAACGGCT	alt_2853_reverse	57	19	52	62	15	54	28	51	28	68
TTTCTTTTGGTCTTTC	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GAGCAACTGTTTAATC	alt_2853_reverse	73	25	89	75	27	72	26	48	40	64
ATTCTCGCGTCATGGC	alt_2853_reverse	129	46	165	132	38	133	49	137	44	125
GATAATGAAGCTTTTA	alt_2853_reverse	126	33	147	118	45	125	31	130	34	88
CCTTTAACCTTTAGGT	alt_2853_reverse	3	0	8	6	4	8	3	7	6	4
CTTGCTGTCTTGGCGT	alt_2853_reverse	57	15	64	43	31	45	17	59	21	42
TGTTATTGCCCGTGCT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TAACTCAGTTCGATTG	alt_2853_reverse	78	35	133	107	37	78	34	109	45	97
TGTGTCTTTTTAGGAT	alt_2853_reverse	45	13	33	37	17	44	14	40	23	41
TACACGGGTCCGCTCT	alt_2853_reverse	58	24	65	59	24	58	20	51	11	60
CCCGAACCCAAGTTCG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GCTATTAGGTGGAGCA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGTGACATTTGCA	alt_2853_reverse	129	39	156	146	46	106	60	112	45	129
CATTTCCCGCGGATGC	alt_2853_reverse	33	41	58	52	47	41	44	39	52	33
GACTATACATCGGGCT	alt_2853_reverse	48	28	58	40	20	49	15	48	21	50
CGGGCTGTCGAACTTA	alt_2853_reverse	18	4	19	16	5	17	4	15	5	16
TACATTTTCCAGGACC	alt_2853_reverse	16	11	41	13	6	14	12	19	10	31
GTGGCCTTCGATTTCT	alt_2853_reverse	306	74	342	312	80	292	118	280	109	266
TATTAGGGAGCCTGCT	alt_2853_reverse	70	27	60	67	15	52	17	68	26	55
GGGTCTGTCCGTTACG	alt_2853_reverse	104	33	178	128	54	124	44	111	47	113
TAGGCTATTAGCACTG	alt_2853_reverse	314	84	364	321	116	281	125	291	121	272
ATAAGTGTTGTGAGCT	alt_2853_reverse	57	12	50	47	11	44	12	33	24	35
TTCGCCCTGCGTGCTA	alt_2853_reverse	51	19	69	74	19	62	23	50	21	49
ACGTATGGATTGTTGC	alt_2853_reverse	9	2	3	7	0	7	2	4	3	2
TGCAGATTGCTAATGT	alt_2853_reverse	101	30	103	104	27	91	39	81	39	82
TCCGGATCTAATGTAT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAACTTTAGGGCG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AAACATCTTACTCCAT	alt_2853_reverse	226	75	284	239	86	225	84	229	92	195
GCCGAGATTTATTGCG	alt_2853_reverse	33	15	35	30	19	34	14	30	16	32
CATCTGTCGACTACCA	alt_2853_reverse	23	11	38	42	15	26	20	48	20	33
GATTCCTTCACGTAGT	alt_2853_reverse	14	7	21	15	10	17	15	14	8	11
GATTTATTGTATCGCG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTACTTCTGACTACCG	alt_2853_reverse	147	67	190	165	66	143	51	168	54	146
CGACCGTACGTCATGT	alt_2853_reverse	140	53	161	172	55	165	43	130	59	119
ATATCTCCAGATGTCA	alt_2853_reverse	28	7	47	37	9	29	29	21	15	32
GCGACTTCCGCGCTTA	alt_2853_reverse	112	111	138	138	102	113	122	115	117	106
ACCTCCCCAGCGTCGG	alt_2853_reverse	9	10	17	17	11	14	10	13	10	13
GTTTTATACAAGGCAC	alt_2853_reverse	173	73	238	208	69	197	66	196	97	208
CGAATAGGCTTCGCCT	alt_2853_reverse	269	89	275	266	97	248	93	234	99	268
ACAGTGTTCCCGCTAG	alt_2853_reverse	92	38	115	100	39	89	38	81	37	94
GTAATCCCGTATGTAT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGGTAAATAATA	alt_2853_reverse	23	7	25	32	10	23	16	26	7	30
GGTTATTTCTGTGGTG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCATTTTCTTTCA	alt_2853_reverse	172	31	206	191	41	152	41	129	42	136
GAAAGTCGTTGTTCCA	alt_2853_reverse	26	9	46	26	13	27	9	14	10	30
TGATCATCTGCTGTCG	alt_2853_reverse	118	50	155	142	35	119	60	96	57	109
TTGCATTTGCGGAGTT	alt_2853_reverse	102	49	134	110	40	119	45	93	53	124
CCGAAGACGGAGAGCA	alt_2853_reverse	42	31	71	46	19	28	26	45	19	57
TCCTTGAGACACCGGC	alt_2853_reverse	64	24	84	66	24	54	23	64	28	55
ATGTAGAGTCCGTCAT	alt_2853_reverse	31	13	34	34	12	43	17	31	8	34
ATATGTGGAGCCACAC	alt_2853_reverse	84	29	67	82	35	81	29	70	32	69
TGACCCATTCTCTTGG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTACCATTTCGGGAGT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTGACGTCAAAGG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
CGGTATCAGGTGCATA	alt_2853_reverse	12	5	10	7	3	9	4	9	5	9
GGTTCGCGTCTTTTCA	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTACACTAAGGTGATA	alt_2853_reverse	103	38	105	94	33	88	41	96	37	79
TACCCGTGCTTTTTTA	alt_2853_reverse	30	12	43	20	15	29	12	24	16	15
ACTTGGAAATTAGTGT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTTGATTTAAGCC	ref_2853_reverse	20	3	16	15	3	14	9	10	8	14
TTTGGCCTTTTTTAAC	alt_2853_reverse	128	47	127	129	47	115	44	117	44	119
TGAGGAATGTGCTCCG	alt_2853_reverse	31	24	42	35	24	46	25	40	23	33
CAAGATCACCAGGGGC	alt_2853_reverse	13	4	16	12	2	11	6	8	8	10
GCCGCGCTTCTTTTAC	alt_2853_reverse	21	14	28	30	8	16	7	30	17	22
TCGGGTCTACTGGCCT	alt_2853_reverse	51	22	27	43	22	35	21	31	32	33
CTACCCGTTCGGGCGG	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTGTTACCTGATG	alt_2853_reverse	47	22	87	58	14	62	31	68	29	54
TTGAGGACCCTCAGAT	alt_2853_reverse	0	0	0	0	0	0	0	0	0	0
AACGACCGCCGACACA	alt_2853_reverse	40	13	53	46	15	42	21	40	27	58
TTAGACATAGCTTCTC	alt_2853_reverse	69	25	67	61	26	42	30	59	23	44
CCGTCATTCGAACTCG	alt_2853_reverse	48	17	65	76	23	68	16	56	29	58
TGCTATACGACACGCG	ref_5065_upstream	71	43	54	47	23	42	61	64	42	47
CTGGCCCGATCAAACA	ref_5065_upstream	3	3	8	4	4	2	4	2	3	1
TTTATCAAGATATCCT	ref_5065_upstream	48	21	50	35	19	33	30	44	23	31
TATATTGCGGTGGTTG	ref_5065_upstream	7	2	6	3	7	6	7	6	3	5
CATCTGCCTGTGTTGG	ref_5065_upstream	28	18	38	33	18	23	19	21	29	19
AGAGCCTGCCCTAAGA	ref_5065_upstream	68	45	95	59	30	59	43	78	60	57
GGAATTGCAGTAGCCA	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCGTGGCCTCAGG	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCAACGTATCACA	ref_5065_upstream	53	52	112	80	47	63	48	65	57	62
AAGTGGGCCTTCCAAC	ref_5065_upstream	81	49	98	63	66	66	40	69	44	64
CTGATGGAGCATGTCG	ref_5065_upstream	70	46	88	73	40	79	50	75	49	59
TTGTTGCGTTGTTGAA	ref_5065_upstream	16	21	23	20	11	29	15	19	15	11
TTCAATGTCTCTCCTT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCGGTATTAATTT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGGGTGACACGGC	ref_5065_upstream	14	5	9	6	2	10	5	5	9	7
AGTTCAGTGAGAGCCG	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGTCGTGTGTCA	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGTGAAAGGTCCT	alt_5065_upstream	94	102	142	92	89	98	90	105	109	92
CCCAGTTAATGCGTCC	ref_5065_upstream	8	5	4	6	3	3	3	5	1	6
GTAACTGGGGTGATCC	ref_5065_upstream	24	20	20	23	35	22	25	29	28	17
TTCGCATTTTTTTATG	ref_5065_upstream	80	48	82	61	42	60	55	69	39	42
CCAATGGTGATATTTG	ref_5065_upstream	89	53	94	85	71	57	63	71	68	68
GTACCTTGTGAGCACT	ref_5065_upstream	18	10	21	20	11	11	3	12	8	11
TCGCTTTACTAAGTAC	ref_5065_upstream	16	27	21	13	26	21	15	23	16	15
TGCTTCATGCGGTTGT	ref_5065_upstream	10	12	8	10	9	3	2	9	10	4
TACATTCCTAATAGCA	ref_5065_upstream	32	23	40	35	38	37	22	26	19	32
GCACTACTTTGCTGTA	ref_5065_upstream	0	0	1	3	2	3	1	5	2	2
TGACGGTCACCTCGTC	ref_5065_upstream	16	7	11	20	13	13	9	12	6	9
GTTCACCGCGTGGCAG	ref_5065_upstream	10	10	5	5	16	6	3	6	14	4
GGACGAGACAAGCCTA	ref_5065_upstream	20	8	11	17	7	12	13	6	13	15
CTGGTATTGTTCTGAT	ref_5065_upstream	20	12	21	18	11	12	10	27	20	18
TTGAATTACAATCGCG	ref_5065_upstream	26	17	23	27	13	19	16	19	16	11
AGGCTTTGATTCGCTG	alt_5065_upstream	6	5	10	11	3	5	3	11	7	9
GGATACATGTGGTTCT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGGTATGAATGAT	ref_5065_upstream	30	22	33	32	20	39	17	28	16	32
AGCCGAATAGCTGACC	ref_5065_upstream	0	1	2	3	4	2	0	0	3	3
TCGGATCCACGCAGGA	ref_5065_upstream	29	18	53	37	27	29	19	43	27	36
TCCGGAGAGTTAAGTG	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGTAATGTACCTA	ref_5065_upstream	14	14	17	11	9	5	4	9	8	9
TTGTGTCATCGCGCGG	ref_5065_upstream	21	31	37	23	17	31	19	35	20	27
ATTGAACGTCGCTCCT	ref_5065_upstream	196	122	226	217	153	163	154	170	161	166
TGCTCTCGTTCAATGT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTATCTGACAAAC	ref_5065_upstream	35	35	38	33	37	26	25	31	34	25
ATTGTCTACCCCGCGC	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGAGCGCGTTCGC	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TTTGAAAGCTATCCTT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TATCGAGTATTCAATG	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TATTGTCTAGTAAACC	ref_5065_upstream	41	32	24	18	16	29	28	24	15	25
TTGTCTTCGACGGAGC	ref_5065_upstream	158	98	198	148	103	182	115	142	125	130
GTCATCTTGTACGAGT	ref_5065_upstream	17	17	27	29	21	30	11	22	13	19
TCCCATGATGGCTTAT	ref_5065_upstream	16	5	16	11	3	9	9	12	8	14
CTAGCTTCTGGACGAG	ref_5065_upstream	41	18	48	39	37	30	20	41	20	34
ATTTCGGCTACACTTG	ref_5065_upstream	3	1	3	2	3	5	1	2	1	3
GTGCTACTTGGCGGCA	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGGATCCGGTAAT	ref_5065_upstream	16	9	22	17	11	17	14	20	27	16
TGATGAAGTCTTCTTT	ref_5065_upstream	2	1	3	2	1	3	1	5	4	3
ACGCTGATTGATTAAA	ref_5065_upstream	75	40	99	72	53	86	41	71	61	71
TGACTTTTCTAGGTAT	ref_5065_upstream	113	59	92	95	61	83	78	84	68	55
TGTGCGTTAGGAACGA	alt_5065_upstream	19	10	24	17	16	20	11	21	11	20
ATATGCGCGGAATTCA	ref_5065_upstream	89	73	113	93	66	109	62	98	63	98
TTCCGTCAAAGGACAC	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTTACTGGTAAGT	ref_5065_upstream	7	4	13	11	5	7	5	6	8	4
GCCCCGTTAATCCCCA	ref_5065_upstream	13	6	13	19	11	13	17	13	6	8
AACCTTGTACTAAAGC	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTGTTACGGGTCG	ref_5065_upstream	53	28	50	45	28	26	32	40	22	39
ATTGCATATAGTCCTT	ref_5065_upstream	8	12	15	7	7	7	4	13	9	8
TTTGTTATACTCGCCT	ref_5065_upstream	19	12	24	12	14	26	15	18	18	25
TGCTATGAGTTATTTT	ref_5065_upstream	54	21	40	51	19	32	22	26	25	34
GCCGTCTAGTCAAGTT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TAGTATACCCCCTCAT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
AGTCACGAGTAATCTT	alt_5065_upstream	69	46	99	84	34	61	47	57	46	58
CATTCTTTTCGGTTTG	ref_5065_upstream	35	26	29	24	28	29	26	28	23	28
AAATCCGCGGTCAATC	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
ATCATTTTTATGAAAC	alt_5065_upstream	22	11	26	24	18	36	7	19	13	22
GTAATTTGATTAGGCT	ref_5065_upstream	89	73	103	87	73	65	58	106	68	78
GCACGTAAATGATGAA	alt_5065_upstream	6	13	31	20	9	20	12	22	15	23
CACTCGGGAAGCCGTT	ref_5065_upstream	62	66	110	87	78	80	83	91	79	64
GGTCCGCTGGATGCGT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
GCGCATTTTGAGTCCT	ref_5065_upstream	53	36	82	58	39	70	33	45	45	50
CCATTTTCATACATCC	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
AGTCATGGCTAGGCTA	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
CGGGGCATTGTTTGGT	ref_5065_upstream	3	2	4	2	3	4	1	0	7	2
TCTCATACGTGCGCGG	ref_5065_upstream	10	15	13	17	20	23	19	18	16	11
GGGTGGACGTTAAGCT	ref_5065_upstream	77	42	79	74	49	63	48	88	47	65
CAATCAGCCTGCAGCC	ref_5065_upstream	36	18	41	50	20	41	27	35	33	32
GACCCTAGGCTTCCTC	ref_5065_upstream	19	12	15	14	9	15	17	12	18	17
TTGCCACTGGAAAGGT	ref_5065_upstream	7	14	14	19	14	13	11	11	17	14
CCTGAGTAAGGCTGCC	ref_5065_upstream	53	51	102	88	57	72	45	80	63	63
GATTCTTAACCTTCTT	ref_5065_upstream	33	21	40	24	22	17	12	20	19	17
GGCCAGGATAAACTCA	ref_5065_upstream	22	25	32	31	18	22	20	32	14	22
AGCTTTCTACCCTCGT	ref_5065_upstream	1	0	3	3	0	2	0	0	0	2
TCCGCCTGTGCTTCAT	ref_5065_upstream	13	9	17	15	10	19	11	22	6	15
AATCTAAATCTTTCAT	ref_5065_upstream	38	17	27	31	25	40	20	39	19	29
TTTGATTTATTAGGAA	ref_5065_upstream	20	19	24	8	11	20	13	22	15	14
TTAACCCTCTCTCATG	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
AGTCAAGTGCAGATAT	ref_5065_upstream	85	60	96	74	62	62	62	67	54	79
TGATTTGGGAGTACCT	ref_5065_upstream	21	11	11	23	7	9	4	10	9	11
CGTACTTTCGAGCGGT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCGTGGGCCGTCA	ref_5065_upstream	127	70	143	126	57	121	73	105	80	84
ACCAGCGGCGCCCGTG	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
ACATTATAAGTTAGAT	ref_5065_upstream	25	23	45	31	26	18	12	30	21	15
TAGATAGGCGAGGGGG	ref_5065_upstream	92	59	98	79	35	105	60	69	68	68
CTCTGGCAGATACAGT	ref_5065_upstream	30	21	37	27	22	30	24	25	17	23
CGACATAGTACATCTG	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGTAATCTTTGGC	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTGATGCCCTATT	ref_5065_upstream	0	0	0	0	0	0	0	0	0	0
CCATGTTCTTGTCCTC	alt_5667_new	35	177	39	30	172	31	166	31	157	25
CAATGTTCTTGTCCTC	alt_5667_new	0	0	0	0	0	0	0	0	0	0
TAACGTATTCGTGTGT	alt_5667_new	33	44	38	31	41	33	29	35	46	27
TTTCAAATGTATTTCC	alt_5667_new	14	26	19	15	21	16	24	18	20	24
GCTAGGTAAGTCGGGC	alt_5667_new	31	30	49	29	54	26	44	40	55	40
CGCCACTTCCGTTCGC	alt_5667_new	0	0	0	0	0	0	0	0	0	0
AACGCAAAAGACGTGT	ref_5667_new	25	24	31	18	31	18	36	21	24	19
AGTAAAGACAAGACGC	alt_5667_new	20	16	27	11	17	15	23	15	19	7
GTTATAGAAGTAAAAC	alt_5667_new	3	6	3	4	3	4	6	3	2	5
CTCCACATGCTTTTCT	alt_5667_new	3	1	6	8	9	5	8	3	15	2
GTTAGTTGGCGATCCG	alt_5667_new	0	2	1	5	1	2	4	3	2	1
GGAGTTGACTATTGCG	alt_5667_new	77	99	99	61	84	71	105	57	102	56
CAGCCTTAACAGTCAC	alt_5667_new	19	25	13	19	13	13	23	14	30	7
ATCATATACTGATAAG	alt_5667_new	0	0	0	0	0	0	0	0	0	0
CTAAGTATACAAGTGT	alt_5667_new	1	0	1	1	1	1	0	1	0	1
GTGTCTATGTATCTGG	alt_5667_new	15	16	27	10	18	14	26	14	21	12
TTACATGCTAATCCCG	alt_5667_new	0	0	0	0	0	0	0	0	0	0
TCGGCTGGCGTGCAAT	alt_5667_new	40	33	36	38	39	23	44	25	43	26
CGTGTATGCGTTATGT	alt_5667_new	4	9	7	3	5	4	1	4	10	7
GCGAAGAATGATTGTG	alt_5667_new	132	155	123	114	178	89	172	125	184	102
CATTTCCTAATGATAC	alt_5667_new	223	251	253	209	271	186	251	191	256	205
CCGTCGACCAGGAGCG	alt_5667_new	12	85	9	15	77	7	59	8	79	6
TCGTCGAGTCCGGTAC	alt_5667_new	0	0	0	0	0	0	0	0	0	0
ATGGGGGCATCGCCGG	alt_5667_new	37	56	48	48	35	42	43	31	37	35
TGTGAACACCCACGCC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TTACTTTATTATCAGC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
AATGCTCTTACCGATC	alt_5667_new	12	17	11	12	28	14	19	13	23	10
TTTGTGAGTTACCAGT	alt_5667_new	106	129	95	112	139	91	164	78	134	79
TTTTCACACATCGGCT	alt_5667_new	70	87	71	74	89	61	92	72	104	60
CTTCCTAAATCCGGAA	alt_5667_new	193	324	308	252	321	228	343	253	315	245
GATCTCACATTGGTTG	alt_5667_new	4	15	7	14	12	13	13	12	18	9
TCATTATCCGATGAAT	ref_5667_new	38	42	34	35	54	37	27	35	59	43
GGGAATGGACTATGTC	alt_5667_new	0	0	0	0	0	0	0	0	0	0
ATCAAGCGGCATGTCG	alt_5667_new	26	19	20	17	18	21	26	12	17	15
TCGTTCGTGGCTGACG	alt_5667_new	0	0	0	0	0	0	0	0	0	0
CAGCCTCTCCTATCCG	alt_5667_new	6	8	1	3	10	4	11	3	6	2
AAATGTAGAATCTTAT	alt_5667_new	6	7	3	12	6	5	9	6	5	7
TTGCCCTTCAGACCAG	alt_5667_new	151	244	228	195	277	183	260	184	228	162
CGGCACCTATACTATA	alt_5667_new	6	6	8	8	14	11	8	2	7	4
GTCATTCTGTTCCGTT	alt_5667_new	0	0	0	0	0	0	0	0	0	0
CTTATACGGTACATTC	alt_5667_new	0	0	3	1	4	3	2	1	0	2
TGCTACTTATTTATAA	alt_5667_new	7	12	7	5	7	5	3	7	15	5
TGTGGATTCACCGGAT	alt_5667_new	0	0	0	0	0	0	0	0	0	0
GTTTCCTAATCGAATC	alt_5667_new	39	66	56	43	51	41	57	46	72	33
TATGCATAGCACAGCA	alt_5667_new	0	0	0	0	0	0	0	0	0	0
TGTTGGGCGAGATCCA	alt_5667_new	0	0	0	0	0	0	0	0	0	0
TGTTCGGTCCATAAAA	alt_5667_new	0	0	0	0	0	0	0	0	0	0
AGGTCGAATTTCTTGT	alt_5667_new	0	0	0	0	0	0	0	0	0	0
AATGAAGTTGTCCCGA	alt_5667_new	0	0	0	0	0	0	0	0	0	0
GTATGATGCGTCTGGT	alt_5667_new	28	39	39	15	28	19	35	17	24	17
CCGTTGGAGCAACAAG	alt_5667_new	21	23	13	15	13	9	21	19	26	9
GGTGAGATAGTTACAT	alt_5667_new	19	34	34	28	36	28	36	27	32	20
CTCTAATATTTTGACT	alt_5667_new	48	90	63	74	111	43	79	67	101	59
TAAAACTACTTAATAT	alt_5667_new	96	145	135	113	121	92	134	84	143	99
TATGGATATCTTTTTA	alt_5667_new	1	1	3	3	3	6	2	4	2	4
TTGCCCTTCAGCCCAG	alt_5667_new	0	0	0	0	0	0	0	0	0	0
ATGCCCACCACTCCGA	alt_5667_new	28	22	24	19	16	26	23	17	24	28
CTCTTTTAACATGAAG	alt_5667_new	35	65	47	58	54	34	64	46	75	29
AAGGTAAGGGGCCCCC	alt_5667_new	115	124	178	145	105	152	136	134	147	117
GCGCAAGATAGCTAGC	alt_5667_new	7	6	4	0	9	5	4	4	5	2
TCCGATACACGTCCGC	alt_5667_new	20	29	21	23	32	19	39	26	30	22
TAGGGGCGCCTATGGT	ref_5667_new	60	88	65	69	63	49	70	46	91	58
ACTGGTCAGTGAATAC	alt_5667_new	37	62	38	49	53	34	49	37	57	30
TTGCTTTTGTGTCGTA	alt_5667_new	39	36	42	40	43	21	37	26	32	38
ATACACTCTATCGACC	alt_5667_new	13	28	11	8	25	7	18	7	42	10
TTGAGGCGTTTGTGCA	alt_5667_new	12	14	22	20	31	16	21	29	33	9
GTATGAAGCGACGTGC	alt_5667_new	67	106	110	91	117	85	139	76	145	60
CAGTCCGATATGCCGG	alt_5667_new	16	20	10	16	22	16	19	10	19	17
TCTTTCGGTATGAGCT	alt_5667_new	49	62	54	43	80	49	40	59	66	58
GTCCTGGTACTTATAG	alt_5667_new	23	10	22	13	12	12	7	18	22	11
GGATATTACTGAATTT	alt_5667_new	0	0	0	0	0	0	0	0	0	0
AGCTGGATACTTGCGG	alt_5667_new	4	2	0	1	4	1	1	0	4	0
CAACTTACTTAATTAA	alt_5667_new	26	40	34	29	58	29	70	30	42	32
GTCGATCGATATGTTT	alt_5667_new	19	20	20	24	26	20	21	17	21	10
CACCTCGTTCACACTC	alt_5667_new	0	0	0	0	0	0	0	0	0	0
AATGCGGCTGGTTACT	alt_5667_new	23	26	30	33	29	27	22	31	32	13
GTTTTGTGCACATCCC	alt_5667_new	25	38	24	18	30	12	36	20	32	19
GTGGTTTCGAGGGATA	alt_5667_new	1	5	9	5	3	6	6	1	11	3
TAATCACGAGGCACGG	alt_5667_new	0	0	0	0	0	0	0	0	0	0
GTAGTACTAGCTGTAG	alt_5667_new	39	53	41	47	60	38	41	27	52	31
GAGCGGTTCCTGCTGG	alt_5667_new	4	12	11	7	10	5	14	6	8	4
GTTAGGATGGCTTTTC	ref_5667_new	14	18	11	17	21	10	15	14	22	11
CCATCTCCCCTTTTTG	alt_5667_new	3	20	3	1	8	7	19	1	10	2
TCTGGCGTGAAAGTCG	alt_5667_new	0	0	0	0	0	0	0	0	0	0
TGGTCCTGCAGTCGTC	alt_5667_new	5	1	3	4	1	3	6	1	4	3
AGGATACCCTGGCCTC	alt_5667_new	0	0	0	0	0	0	0	0	0	0
TCGGCTTGCGGTTTCC	alt_5667_new	17	26	48	26	28	23	34	19	13	15
TTCGTTGTAATTACTT	alt_5667_new	8	23	23	16	21	7	30	13	25	12
GCTAACTCAAGGCCAT	alt_5667_new	37	55	52	44	50	45	73	43	77	45
ATGTTGTAGAAATTTT	alt_5667_new	49	57	74	49	60	51	68	61	71	44
GCAGTGGACTTCACAG	alt_5667_new	77	85	82	86	96	59	88	77	98	75
ATGCCATATCTCCTTA	alt_5667_new	18	17	13	15	9	17	14	15	12	9
TCTTGCAGATACAGAA	alt_5667_new	53	56	48	37	52	33	63	40	46	42
TTTTGTGTGTAGATGA	alt_5667_new	4	2	6	3	3	2	3	3	2	2
TGCCCATTTAACACGA	ref_5392_fdr	54	31	51	39	31	43	37	30	19	32
TACTCGAACGCGCCAT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTTTGCGGGGAAC	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGGTTTATGGGC	ref_5392_fdr	81	66	96	60	57	89	93	67	82	73
AAATCTCAAGATTTTT	ref_5392_fdr	78	46	92	36	65	62	55	50	55	46
TATTGGGGACATGGAT	ref_5392_fdr	153	76	141	91	84	110	82	88	78	72
AGTCCACACCCAGTTT	ref_5392_fdr	54	44	42	36	47	49	39	34	45	60
GTGGTTTGACGCTGTC	ref_5392_fdr	6	3	11	5	1	11	5	6	5	5
CCCAGGAGCCAATTAC	ref_5392_fdr	46	122	77	75	109	48	125	55	136	56
CTCATGGATCTACCGT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CTACGACTTGCTTCGT	ref_5392_fdr	22	25	23	24	19	20	29	12	18	26
GCGCAGGGGGAACTAG	ref_5392_fdr	34	28	44	37	34	37	28	40	38	27
TTTACAGTTTTGTCAC	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
ACACAACATCACGAAT	ref_5392_fdr	270	196	333	268	191	242	213	248	237	222
CTCTGCCCGGGTTGTT	ref_5392_fdr	23	19	28	32	17	27	22	17	18	25
AGGCTGTAGAGAGGCT	ref_5392_fdr	99	76	127	57	92	91	95	96	85	95
ATGGCCAACAATCTTG	ref_5392_fdr	27	19	32	15	20	39	19	17	33	20
GTACGGTCCTAACAGG	ref_5392_fdr	1	8	1	13	14	2	12	3	10	2
CGGCTAACCTTTTCGG	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTATATCCTAAGCCTT	ref_5392_fdr	166	118	208	154	131	131	137	147	141	156
GCAGTCACTCTAACCT	ref_5392_fdr	30	21	43	25	32	28	33	41	31	40
TATCCAACTTCTGTCG	ref_5392_fdr	217	174	228	185	134	181	204	167	194	186
GTATTTGTTGTTTCTG	ref_5392_fdr	79	48	107	89	27	98	42	86	35	61
GCTTTGGGATTCTTTT	ref_5392_fdr	133	69	180	112	101	105	105	101	113	106
TTGGATCTGGTACGCT	ref_5392_fdr	64	39	66	57	52	65	43	76	44	63
GGCTCTAATGGAGCAA	ref_5392_fdr	34	17	49	34	20	29	28	29	25	31
GATGGCTCAGGACCTG	ref_5392_fdr	307	221	422	286	228	312	233	318	242	278
TTCTAGCTACGACATG	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGTGGGGCGTTCC	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
GACAGGGGCCTGGTTG	ref_5392_fdr	28	20	25	16	18	30	19	31	17	28
CGTGTTCATGTGTGGC	ref_5392_fdr	2	2	1	2	3	2	1	3	1	2
CCTTAGTGGCGTCTTT	ref_5392_fdr	65	41	73	52	41	56	47	49	57	64
AGGTTGTTGGCCCCTG	ref_5392_fdr	59	32	57	38	36	44	47	41	56	49
GTTCCCGTACGAGGTG	ref_5392_fdr	9	4	4	3	1	5	7	6	5	6
TCTAATCTCAAGACTT	ref_5392_fdr	7	1	5	12	4	10	9	14	7	8
TGTGCTCTATTGCCTT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTTTATTAGCATC	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCCATCTTGTCCA	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGTTTAAAATCAT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CATGGTCAAGTGGCTC	ref_5392_fdr	6	5	7	10	7	10	6	9	10	12
ACCTAATAATTGACGG	ref_5392_fdr	34	37	48	38	24	35	36	35	39	37
GGGGAGGCACTGCGGA	ref_5392_fdr	8	5	9	9	3	11	5	2	5	6
AGTGGATGTTCCTGGG	ref_5392_fdr	60	46	75	60	40	66	54	51	39	59
CCTCTTAACGAATAGT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TATGCATTCTAGTATG	ref_5392_fdr	17	18	22	22	20	24	29	11	15	16
ATGTTTTCGCTATGCG	ref_5392_fdr	173	134	248	178	121	200	148	171	149	179
GATTATGACTTTTACT	ref_5392_fdr	12	24	24	11	10	20	25	15	12	21
TAACTGATTCCACCAC	ref_5392_fdr	80	64	103	66	52	89	63	82	47	59
AGTTCCTCACCGCTAT	ref_5392_fdr	11	7	12	5	8	10	10	6	9	8
AACTTCTACTCCCGCA	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTCATCCTGTCTA	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTTATATCGGGTCCGT	ref_5392_fdr	84	64	82	87	74	67	51	63	63	69
CGCGCTGCGACTGTTT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAATATTACCCGA	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CATCTAATACGCCAGT	ref_5392_fdr	80	65	86	66	56	90	53	81	69	79
TTGGTAGGGGAACATT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
GGACATACCTTCATAC	ref_5392_fdr	47	41	50	32	52	47	48	31	42	37
GTTACATCAATCACTT	ref_5392_fdr	10	7	12	17	7	8	5	10	7	6
GTCCAGGCAACTAGAC	ref_5392_fdr	36	33	45	26	25	44	25	22	24	29
CACAAAGCGGATAATT	ref_5392_fdr	21	15	25	13	22	23	16	18	27	36
CCGACGAACATATGTT	ref_5392_fdr	95	82	105	85	69	79	80	80	88	71
AGTAACCCTTGTCAGA	ref_5392_fdr	46	28	37	33	36	30	40	35	19	30
CTGGGTCGATTGGCTA	ref_5392_fdr	24	47	18	9	53	12	52	17	56	27
GTTTGCATTGCGTTAT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCACCTTCCTTTG	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
GGCAATTAAGACAGCA	ref_5392_fdr	51	38	72	46	42	50	54	34	41	40
AGTTGTTTTAGGCCGT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
AATTCGTGAGGGGTAT	ref_5392_fdr	30	24	18	19	18	25	20	24	14	22
AATATGCTATTGATTA	ref_5392_fdr	8	8	8	9	12	15	8	16	8	3
GTACTCCCAACTCCAT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGCTAGGTACATT	ref_5392_fdr	32	28	45	31	28	30	24	26	42	33
CAAGTCTTGTTAGAAT	ref_5392_fdr	45	45	54	48	54	44	37	52	42	44
AGTAAGCGATTCCGCT	ref_5392_fdr	38	32	45	31	30	32	23	40	32	39
TACGTTTTGCTGCTGG	ref_5392_fdr	31	23	55	22	23	42	32	33	32	32
ACTGCTAGGATCTATG	ref_5392_fdr	19	27	31	24	25	32	27	33	27	19
GGCCTGTGACCCCCTG	ref_5392_fdr	21	15	44	23	16	35	26	25	16	24
CACTTATTAACCTGTG	ref_5392_fdr	398	319	455	333	316	360	321	397	348	335
TCTTATCCATGTACTA	ref_5392_fdr	49	34	49	25	29	45	28	37	41	31
GTATGCGGTAGTAGTA	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGGGTCTTCGGAC	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGTTTTCCTGAGG	ref_5392_fdr	10	8	8	12	13	15	7	7	5	19
GCATACATAAATGGGC	ref_5392_fdr	12	3	9	10	13	18	10	15	9	8
GGGCTAATAATATGTA	ref_5392_fdr	4	9	6	6	5	5	4	3	4	10
GCTTTGCATTTTGAAT	ref_5392_fdr	27	34	25	27	25	25	22	24	24	22
TAAACTACTACCCGAG	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCTCCGATGAGT	ref_5392_fdr	78	35	70	47	40	45	31	54	52	62
GGTGTTTTTGTCTCGT	ref_5392_fdr	62	29	81	48	44	72	57	67	51	57
ACCAAGGGCTCCAATG	ref_5392_fdr	265	193	274	251	210	247	215	216	225	214
AAACTTTCCTGTCTGG	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CAACGGTTCGAGCTAA	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CACCTCAATGGGCCGC	ref_5392_fdr	89	47	73	74	54	88	49	81	45	72
TTACTCTGTTAGTTTG	alt_5883_new	83	73	83	74	50	73	69	49	70	61
AAAAGGGCTGACCACC	ref_5392_fdr	10	14	14	9	15	9	15	11	11	5
TGTTTGCGCTAGCTAA	ref_5392_fdr	29	28	35	16	22	19	19	34	30	31
CCGTTAGCGGTTAGTG	ref_5392_fdr	79	61	92	71	83	73	70	61	101	72
CGAAGTACCGGGTGTT	ref_5392_fdr	321	200	355	284	230	292	205	296	235	298
TCGCAGGAACTTGGGA	ref_5392_fdr	79	100	106	90	81	81	85	87	94	65
CCCTACAACGTAAATA	ref_5392_fdr	19	21	13	9	10	11	10	7	16	11
GACGCCGTCAGTGCAT	ref_5392_fdr	40	40	32	25	16	40	27	30	23	24
TGTCGCGACCTGCACG	ref_5392_fdr	33	19	40	20	28	40	27	39	39	38
ATGTCTAATTTTTACG	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TTAGATCAAATTTCTG	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTGTACGGTAGGT	ref_5392_fdr	0	0	0	0	0	0	0	0	0	0
TCTAAAAAACGATTGA	ref_5392_fdr	55	83	54	53	86	52	112	60	87	53
ATCTCGTTTCGCAATG	ref_5392_fdr	7	10	14	14	11	9	7	6	5	11
GAGCCGGAGTAAACAC	ref_5392_fdr	71	43	92	56	44	56	58	55	43	39
CTGTCTTATGGAGCTA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
AGTTCCTTAGCGCATA	alt_6069_new	10	13	10	5	19	10	13	5	7	8
AAGCGTCTTGTGTAGA	alt_6069_new	13	13	9	13	10	6	14	11	11	13
TGTTCACAACTCTGTC	alt_6069_new	5	4	7	5	3	1	6	3	10	3
ACCTTCGCTCCTATCG	alt_6069_new	61	71	75	68	65	61	63	54	60	51
AAGCCACGCATTTCGG	alt_6069_new	13	11	8	8	13	6	10	8	7	4
CACCAGTAATCATATT	alt_6069_new	22	19	26	8	37	33	30	23	22	17
GAACAACTACTGGGGC	alt_6069_new	59	61	88	55	81	51	86	49	94	57
TCGCACTCGATGTGAA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TAGTTGCCCCACTGTT	alt_6069_new	40	56	42	29	46	41	36	20	44	24
GATCGAAATCCGCTGG	alt_6069_new	1	4	4	2	3	1	1	1	2	1
GTCGGTGGGAATCTGT	alt_6069_new	28	36	38	19	30	28	30	23	31	12
GATCTGGTCCTCAGTG	alt_6069_new	64	93	56	50	94	51	84	48	81	43
CCTTTTATGATGTCAA	alt_6069_new	7	12	10	5	10	7	16	1	19	4
GCGTGTTTCAGTCGGC	alt_6069_new	8	17	7	8	11	4	5	3	11	3
ACGGGTGAAGTAGGAC	alt_6069_new	103	134	108	105	176	97	182	112	152	89
TTGGCGAGCTCAACTA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
GTTATACGTCGAATGT	alt_6069_new	12	12	10	5	12	7	31	12	19	11
GGCCTGTATGGTTAGG	alt_6069_new	69	103	81	50	111	66	115	38	95	61
CTTTCGGTTACCTAGG	alt_6069_new	19	31	28	21	27	18	29	27	20	16
AACTCAGTGCAATCAG	alt_6069_new	6	11	15	6	15	13	12	9	13	7
ACCGTCCTCCAGTATG	alt_6069_new	29	54	38	40	54	35	55	26	26	25
GGGTCACCGTTTTAGG	alt_6069_new	0	0	0	0	0	0	0	0	0	0
AAGGCCAGATTAAAGT	alt_6069_new	63	69	55	46	62	52	64	40	71	57
AAAGAGGGGCGTAGAA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
GTTCTTATACCCGTTC	alt_6069_new	0	0	0	0	0	0	0	0	0	0
AAGTTACACTTTTTAA	alt_6069_new	3	3	1	4	3	6	5	3	6	3
TGCGACGTGACGACGA	alt_6069_new	19	13	25	25	20	26	24	18	31	12
GCATACCGTATGAAAG	alt_6069_new	29	45	39	38	50	36	63	44	53	23
GCGTGGATGTAAGAGG	alt_6069_new	23	43	38	30	48	23	49	23	55	29
CCGGATTCAGTTGTTA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
CATCTTGTTAATACGA	alt_6069_new	5	15	13	14	9	4	14	7	19	8
TTTTTAGAGTCCTCGG	alt_6069_new	0	0	0	0	0	0	0	0	0	0
GACCGTTACGAATTCT	alt_6069_new	22	30	27	33	25	29	37	20	29	14
ACCACAGGCCACGGAG	alt_6069_new	5	12	7	8	10	12	16	8	15	7
GATTAATTTCGTCCAG	alt_6069_new	37	56	84	49	57	53	60	45	70	58
TGGAGAGACATTTTGT	alt_6069_new	261	354	348	258	354	274	338	229	328	272
TGTATTGAGGCATCGG	alt_6069_new	7	15	13	5	21	9	26	13	13	6
TGACCTCTTCATTGAA	alt_6069_new	10	8	7	9	8	4	11	3	9	10
GGTTTTTTGTCTCAAT	alt_6069_new	60	80	49	54	82	54	77	58	81	49
AATTCCACGAGGCTCG	alt_6069_new	12	5	17	14	11	13	16	9	20	10
CGAATGGCCTATGGCG	alt_6069_new	123	157	129	115	158	100	187	117	186	102
TTTTCGCTGAGATTCG	alt_6069_new	3	5	3	8	2	2	5	1	5	4
TCTCCCTTTATGTTTG	alt_6069_new	15	22	17	14	23	16	30	12	12	11
CTAGATGCATACTTCT	alt_6069_new	5	4	4	3	2	2	9	2	3	2
TCGGCCCATATTCGAT	alt_6069_new	11	18	22	13	18	18	28	16	21	18
TTCGTCCTATACGTTT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TTGATAAGCAGGAATG	alt_6069_new	2	4	2	5	2	3	5	6	9	6
GGCTGTGTGTAATTTT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TTCTTGACCTGGCTGC	alt_6069_new	25	33	27	16	22	17	23	16	29	20
TACCATCATTCGAATA	alt_6069_new	15	34	25	19	30	16	39	19	26	15
GCCCGTAGCTATACCT	alt_6069_new	20	15	29	22	36	23	33	25	37	27
TTGTGACACTGTTTTT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
CGTAGGGTGTATGTGG	alt_6069_new	10	11	4	2	6	1	8	3	4	3
TATATAACTGTATGAT	alt_6069_new	14	20	10	19	20	18	19	9	12	13
TAGTTTCTACATGCCC	alt_6069_new	5	6	5	8	6	7	8	11	7	10
CACTGCAGGGTCTTAG	alt_6069_new	46	39	36	26	45	31	48	29	44	14
AGTCTTGTTGACTTGG	alt_6069_new	69	84	99	76	77	68	97	40	101	47
GTTAAGCCTTTGCCTC	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TCCCAAACGTTTCTTA	alt_6069_new	53	66	76	48	70	41	72	35	76	47
TCTGGTGTCATTTCGG	alt_6069_new	12	14	6	11	15	10	27	12	13	13
ATGAACATGTTTGGAC	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TGGCAACCAGGCTTTA	alt_6069_new	15	14	28	25	25	18	29	17	29	18
ACAATCATTATTGTCA	alt_6069_new	24	20	23	17	22	11	20	22	16	14
GCAAATGGACTCCGCA	alt_6069_new	25	26	21	21	30	16	37	17	23	19
ACTCCTCCTACTCCTC	alt_6069_new	41	39	30	30	72	32	52	21	59	24
CCCGTGGGCTAAGCAT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
ACGACACGGCCAGATG	alt_6069_new	61	61	59	48	58	49	74	66	61	44
TAAGTCATCCGTATAA	alt_6069_new	60	98	67	51	75	53	79	53	84	56
TCCATCTGTATGCCCC	alt_6069_new	7	4	2	1	7	2	5	1	5	2
TCTAGGTACTTCTCCG	alt_6069_new	2	3	1	1	6	1	6	2	6	1
CAATTAATCACGCCGT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TCGGGTGAACTTCTCC	alt_6069_new	10	10	7	7	13	2	11	9	19	18
GCATTTCAATGCTTGA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
ATAACCGTGTTCATAT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
AGGGTTGAAACCTGCA	alt_6069_new	11	7	9	13	5	3	9	3	7	3
CCTAGCCCTTAATATC	alt_6069_new	14	32	19	16	23	14	32	11	31	18
GACGGGTTCGTTGGTG	alt_6069_new	5	15	9	13	9	7	12	11	17	5
TGACTGGCTGTCAGGA	alt_6069_new	6	10	11	18	14	9	11	6	14	16
CTAATTACGCACAGTT	alt_6069_new	10	4	6	4	8	2	5	4	19	3
ACATCTGACTGGCGTA	alt_6069_new	10	19	11	7	17	3	24	12	8	5
TTACAAGGTTTTGTTG	alt_6069_new	36	64	51	36	57	34	71	32	65	31
CGTACGGAATGGCAGA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
ACACTCCTGGCGCTGT	alt_6069_new	6	24	6	5	14	6	16	2	21	4
ACCGGCATTTTCTTTC	alt_6069_new	0	0	0	0	0	0	0	0	0	0
GCGCTTGCACTTTGTG	alt_6069_new	0	0	0	0	0	0	0	0	0	0
CCTTGCCCCCTACCTT	alt_6069_new	14	22	17	8	16	11	14	19	22	4
GGCTCAAAGATTGTCT	alt_6069_new	14	23	26	16	29	16	28	16	32	14
CACGCCGGCTGTTATC	alt_6069_new	3	15	9	2	23	2	20	5	14	3
CATTTCTAGCTCTCAA	alt_6069_new	14	5	16	15	13	14	14	9	12	4
TATAAAAAGTTTTTAT	alt_6069_new	4	3	4	0	5	3	7	1	1	1
ACCGGTGTTCTCGTCG	alt_6069_new	5	28	14	5	15	11	31	6	25	8
GGCCCAAGTTTCCGCA	alt_6069_new	2	4	7	1	1	5	3	1	3	4
TCACGTTCAAGGACCT	alt_6069_new	4	23	17	16	15	11	18	13	17	10
TGAGGAGGAAATCCCG	alt_6069_new	23	10	27	11	17	6	16	10	8	18
CGACTCAGTTCTTAGA	alt_6069_new	14	20	13	8	15	15	16	14	9	5
AGTAAGAGGTTTTAGC	alt_6069_new	9	14	7	10	11	8	7	11	12	10
AATTCCTCCTCTTAAA	alt_6069_new	6	6	6	6	3	7	9	4	8	4
ACGACTCTTCGTGAGT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TCATCCATATATGCAC	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TTAGTCTCCTAGACTT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
CTTCTTGCATCAGATA	alt_6069_new	19	20	17	17	26	25	36	19	31	14
GCCTATGAACGATTTG	alt_6069_new	0	0	0	0	0	0	0	0	0	0
ATCCCTGGTCTGAATT	alt_6069_new	0	0	0	0	0	0	0	0	0	0
TTTATATCATTCGTCA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
GATGGAGATACTGTCT	alt_6069_new	43	36	39	39	44	30	48	30	58	29
GGCACTACCTACTCGC	alt_6069_new	21	46	36	26	49	25	43	43	50	22
TGGCATTCTGTGTTCT	alt_6069_new	55	35	67	53	40	42	37	36	42	43
TAACCTACCGTATGTG	alt_6069_new	24	40	16	15	42	11	64	18	49	13
ACCAGCTGAGTTAATA	alt_6069_new	0	0	0	0	0	0	0	0	0	0
AGTTGATATCGGAGCT	alt_6069_new	53	57	67	51	76	64	61	39	57	46
CCATAGGCATTGGTTA	alt_6069_new	29	69	56	45	73	39	59	35	68	37
TCGCGTGAATTCTCTC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTCAAACCACTCTCTC	ref_3416_reverse	56	49	82	54	47	61	59	61	52	65
TAGACGTCAGTGTGCG	ref_3416_reverse	35	34	41	28	35	27	38	44	29	36
GTTGGGCCAGTCGGAT	ref_3416_reverse	35	41	58	51	30	32	47	43	51	46
TCACAGGTAGTACCCT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
ATCGAGGACATATAGA	ref_3416_reverse	7	3	6	5	6	9	4	10	4	7
TTGCATGGTATTGATA	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCAACTAAGCTCT	ref_3416_reverse	81	71	117	108	57	87	68	70	73	101
TGCGCCTTTGTTCCTG	ref_3416_reverse	33	31	47	32	31	30	33	23	20	28
TCTATGCTTTCAACCG	ref_3416_reverse	50	56	53	56	53	61	51	48	48	47
TGGTAGCTTGTAATCG	ref_3416_reverse	530	411	597	566	407	570	400	500	443	486
CACAAGCGCGAGTTTA	ref_3416_reverse	9	6	6	7	3	11	7	5	7	14
GCTCTGCTTCGGTTCT	ref_3416_reverse	8	9	11	11	19	7	9	10	14	10
CGGATTTCTGACCCGG	ref_3416_reverse	110	69	143	102	84	91	96	109	87	109
AGCTAGCCGGACAGAG	ref_3416_reverse	11	16	22	23	18	19	19	13	21	18
GGCCGTACCGCCGCGA	ref_3416_reverse	138	130	194	167	125	160	135	169	161	144
TAAAACGGTACCACTC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GCGATCATATATTTGC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
AGTACACCTACTAACC	ref_3416_reverse	5	4	18	13	13	15	14	14	11	9
TTCGTACTCCGGTAGC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
AATACCAAGCTACATT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CCTGATTCGGACAAGT	ref_3416_reverse	38	29	25	32	23	47	26	37	41	21
CTATTGAGCGTGGTAT	ref_3416_reverse	17	6	31	16	17	23	13	20	18	11
TTAGCTGTACTGTGGC	ref_3416_reverse	2	4	2	8	8	9	3	8	5	8
TTTTTGTTACGTCTGA	ref_3416_reverse	88	70	92	86	70	85	75	54	83	79
TTTAAATAGCGGTGTA	ref_3416_reverse	21	17	39	41	23	27	24	24	37	24
GCGAAGGGGGTTTGTC	ref_3416_reverse	44	35	49	37	34	35	30	34	30	30
TTCGGGTACTACTATT	ref_3416_reverse	78	82	85	62	64	75	62	67	92	70
TGTTTTAACTGTATGA	ref_3416_reverse	36	34	53	44	27	23	36	18	31	37
CTCTCCGTATGGTTTT	ref_3416_reverse	38	26	35	27	25	34	22	23	36	32
GCATATCGCCCCATAG	ref_3416_reverse	24	21	17	18	23	16	22	16	16	16
CCACAACAGTATCGTC	ref_3416_reverse	10	20	19	16	20	11	12	10	20	10
CTATACATCGCCACTG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTTACGGAGTACGTTT	ref_3416_reverse	71	62	110	91	61	78	87	69	77	78
CAGCCCGCGCTATGTC	ref_3416_reverse	5	12	10	5	6	4	6	5	12	5
CATTGGTGATTTCCTT	ref_3416_reverse	480	353	594	523	345	460	346	476	428	426
TCAGCGGCGCGCTCTC	ref_3416_reverse	7	10	11	11	8	18	7	23	8	11
AACTCTCATCTATCTC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CGTACCGTTCTGGGCT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCAGAAGTCCGCC	ref_3416_reverse	30	28	30	32	23	37	18	26	15	21
ATGCTTCGGTATACCC	ref_3416_reverse	13	14	30	28	14	23	25	21	16	23
GGATTTATCTTTTGTC	ref_3416_reverse	17	8	13	7	7	22	8	20	18	15
TCACAATAGGTTATCG	ref_3416_reverse	18	19	26	27	23	21	23	17	27	30
ACTATAAGTATTGTAA	ref_3416_reverse	291	260	372	297	284	305	314	278	287	254
GCTCAGGTTGGCTTCC	ref_3416_reverse	26	25	34	36	16	30	20	34	21	33
CCAAGGATTATAGGGC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
ATTACGTAAGCCTACT	ref_3416_reverse	44	27	49	42	34	40	35	53	24	51
ATTATGCGGTTCGCAA	ref_3416_reverse	16	8	25	20	9	15	11	16	13	17
ATCCGCTATATTTAAG	ref_3416_reverse	87	51	113	71	65	86	54	65	60	60
TGTTAAATAAATACCA	ref_3416_reverse	265	191	284	235	184	228	191	236	217	251
GATATTCTTCTCCAAC	ref_3416_reverse	39	32	39	34	33	34	26	43	34	25
TTAATCTGGCGCGGTA	ref_3416_reverse	36	37	41	51	35	32	24	40	41	43
CCCCATCGACTGACGT	ref_3416_reverse	123	104	169	150	112	158	103	135	107	151
ATTCGATTTTTATTTA	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TAACCGGAGACAAGAA	ref_3416_reverse	10	8	10	11	6	6	6	6	9	8
GCCCCTACTTTGGCCA	ref_3416_reverse	10	9	29	19	12	16	11	10	17	18
CGTGCGGTGTCTCTCT	ref_3416_reverse	130	96	130	136	97	130	91	120	116	134
TTCCTGGCTTCTGGGA	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CATGTCTACTTTCTCT	ref_3416_reverse	102	68	98	113	103	103	77	101	107	98
GCCGTACAGACTCGGC	ref_3416_reverse	105	97	140	119	82	108	98	129	126	130
CCTCTAATGACATGGA	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GGTATCCAAACTTTGG	ref_3416_reverse	74	51	95	64	67	48	57	77	56	76
CAAACTTTTCTTCTCC	ref_3416_reverse	24	19	28	30	20	23	9	16	13	19
TATAGCCTTTAGTCTT	ref_3416_reverse	6	9	10	6	6	15	13	6	12	9
ACCTGCTTCGCGTCAC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
AATCTTCGTAACGGCG	ref_3416_reverse	26	18	27	19	24	25	18	32	21	29
GATCCGATGGCTGGTT	ref_3416_reverse	54	44	70	68	51	65	42	43	42	81
GGATCTCTCGGTGTAG	ref_3416_reverse	21	12	29	23	19	33	22	33	33	21
AATTATGGGATCGGCC	ref_3416_reverse	37	12	43	32	21	33	33	30	31	37
TGGTCGGCACGCTCGG	ref_3416_reverse	95	73	107	78	75	81	73	80	76	80
ATTTTTATGCGTTAGT	ref_3416_reverse	8	14	13	10	5	5	7	7	15	14
ATGCGCCTGTTTATTT	ref_3416_reverse	44	25	46	33	27	25	25	33	25	23
CATGGCTTGTATGTAT	ref_3416_reverse	11	4	16	8	10	17	10	15	7	14
ACTGCGAAGTGACCTG	ref_3416_reverse	12	15	23	23	17	22	14	14	19	18
GCATAAATGTGCACAA	ref_3416_reverse	30	15	24	24	19	25	16	27	18	23
AGAGCTCTATATTATG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTCAACCTTCACT	ref_3416_reverse	46	49	80	61	70	43	49	63	54	46
TTGCTCGTTTCTATCC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCAGAACCCAGAC	ref_3416_reverse	99	95	120	107	90	103	76	94	76	85
AATTCAGAGGTTTTGT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TCCATACCGTCTTTAT	ref_3416_reverse	47	49	58	53	63	34	41	42	60	34
GCTTATTTAGTTTATC	ref_3416_reverse	46	39	64	57	58	38	49	47	32	51
CTCACAGTATGAATTC	ref_3416_reverse	8	10	28	16	17	24	15	21	17	19
TGTGGGTCCCCACAGC	ref_3416_reverse	18	23	31	20	11	29	22	26	22	25
ACCCCTGTACTCACCG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAATGCTTGTATT	ref_3416_reverse	16	18	18	14	18	15	13	19	21	6
GCAGGATCTGATGGCT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GGGATTCCGGCCCTCG	ref_3416_reverse	25	16	43	40	30	25	35	36	17	23
TTCTCTCCTTTGCCTT	ref_3416_reverse	96	87	125	98	80	97	81	76	96	92
ACGTCTAATCAGTGAA	ref_3416_reverse	37	52	52	47	45	52	30	42	59	34
CTCGGGTTACAAACTC	ref_3416_reverse	14	10	17	16	10	9	12	14	14	11
ACGCTGTCCACCGCGC	ref_3416_reverse	104	272	147	95	261	91	229	123	220	100
ATGCTGTCACGCAGTA	ref_3416_reverse	32	24	24	20	18	21	20	24	13	22
TGGTCGCCAATTTGAG	ref_3416_reverse	23	14	32	32	17	24	24	25	16	26
ACATACCGAACTAAGA	ref_3416_reverse	8	2	7	6	5	4	6	6	4	6
AATGCCTGTATGAATA	ref_3416_reverse	144	95	158	121	132	123	116	106	118	131
TCTAGGCCGTAACATT	ref_3416_reverse	62	65	92	81	83	92	74	89	86	63
CTGCCTCAGTAGTAAT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TAACTCCATAGAGATC	ref_3416_reverse	120	99	129	126	110	95	122	128	106	99
AAAGACTCTTTGAAGT	ref_3416_reverse	70	51	55	57	43	50	50	57	53	58
CCTCTGCCAGGTGGAA	ref_3416_reverse	132	142	176	169	125	143	116	152	137	164
TAATAACCGAATTCGA	ref_3416_reverse	381	263	427	315	274	318	307	339	243	278
AAATTGACTTACAGCG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGCCCCGCAGCCA	ref_3416_reverse	6	7	26	23	7	12	6	16	7	13
ATTTTAGAGGTCCACT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCCTTCTAACGGG	ref_3416_reverse	99	74	118	107	90	105	69	104	81	105
GCTAATATTAGTAAGC	ref_3416_reverse	53	45	67	56	42	63	46	58	47	38
GTCGTCAGTTCTTCCC	ref_3416_reverse	21	12	28	12	19	12	29	10	22	9
GAGAGTTTTGATGGCA	ref_3416_reverse	196	148	255	190	148	204	131	144	162	167
TACAGTGGGGGTCGAT	ref_3416_reverse	48	46	79	60	30	56	42	61	39	44
CAGACCTTCATGCTGA	ref_3416_reverse	5	8	7	6	9	6	4	4	5	8
TGTCAATCAAGGAGCA	ref_3416_reverse	3	4	8	5	5	12	5	7	6	5
TTGGTGCTTGTCTTGG	ref_3416_reverse	109	91	118	98	79	77	66	80	88	63
GGGCTTTGTTAATTTC	ref_3416_reverse	17	11	22	24	12	25	17	25	18	22
ATCTTGGTTGGAGCAG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTCGATGCATCATCCG	ref_3416_reverse	17	14	15	12	7	16	14	18	10	23
AGCCGGGAGTCAAATT	ref_3416_reverse	10	3	12	19	13	13	9	14	5	11
TGCCCAACTTACTGTT	ref_3416_reverse	72	84	101	88	92	91	62	85	81	66
TCTATCGGAGATTACT	ref_3416_reverse	8	9	13	8	8	9	4	3	5	12
GGCTGTTAGTCTATAC	ref_3416_reverse	1	5	3	3	0	3	4	0	4	2
TCCTAATCTCCGCTCC	ref_3416_reverse	26	18	41	34	20	23	31	22	31	22
CACCCCCTTGTATTAT	ref_3416_reverse	32	47	54	38	38	37	42	32	53	43
TGCACCAATGAGCGGA	ref_3416_reverse	141	91	173	125	127	150	120	155	124	142
AAATAGGATATTTTTG	ref_3416_reverse	153	98	184	129	84	124	102	124	90	116
GCACAGCTTACATGCG	ref_3416_reverse	110	82	122	99	69	82	83	86	85	94
TGGGAGCGGTTTACCT	ref_3416_reverse	4	1	2	8	3	6	7	2	4	5
AGGCACAAGTCGGGGA	ref_3416_reverse	112	60	123	106	81	118	76	131	77	106
TGAGTTCTTGGGTTCG	ref_3416_reverse	18	20	18	12	19	10	9	17	11	24
AGTCTAATTCATGACG	ref_3416_reverse	68	60	111	77	46	87	59	72	64	73
CTGGTAGGCATCATTG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCTATTTGTCAGG	ref_3416_reverse	62	61	94	70	55	49	74	60	55	60
TCTATTTAATAGATCC	ref_3416_reverse	12	11	15	9	6	17	18	10	10	23
GAACTCATTTTACCTT	ref_3416_reverse	22	19	23	12	24	12	24	8	18	10
CGCGCGATAACGTCGC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTACCCACACTCCTTG	ref_3416_reverse	6	11	7	8	13	5	20	3	7	10
TTGCTGGCGTGCGTTT	ref_3416_reverse	16	8	14	11	14	14	12	18	16	10
GAATGTCGCTGCCCAT	ref_3416_reverse	20	19	35	17	22	23	16	30	21	28
CACGCCGCTCATGAAG	ref_3416_reverse	126	93	170	188	125	114	105	125	108	124
GCGACCTCCTCCGGAG	ref_3416_reverse	23	11	27	20	14	19	27	16	17	19
TTTGACGCTTGTCGAA	ref_3416_reverse	6	14	17	8	13	11	5	8	4	13
TCTGGCTCTACATTTG	ref_3416_reverse	94	79	118	95	71	86	66	109	87	73
CTCGGTGGCACTCGCA	ref_3416_reverse	12	19	10	10	22	10	12	10	8	23
TCGGACTCATGCACTC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTACCGTGTACTC	ref_3416_reverse	27	33	36	24	27	24	34	20	28	27
ATTTGGTCCTTAACTA	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TGCGATTGCTGAGTAC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGCAGCAGGGACA	ref_3416_reverse	18	13	17	25	12	6	7	16	16	14
TTAGGAGTGATGAAGT	ref_3416_reverse	11	7	11	7	10	7	7	6	6	9
ACTGAATTCAAAAATC	ref_3416_reverse	25	20	35	22	14	25	21	32	21	22
GATCTGTTCTTCTGGC	ref_3416_reverse	73	46	85	72	45	62	64	65	57	63
TACCCGTATTGGCCTC	ref_3416_reverse	5	3	12	5	12	8	4	6	6	3
ATGCCCACACCCCACT	ref_3416_reverse	51	40	71	61	50	63	47	48	32	40
CCCGTAGAGATCCACC	ref_3416_reverse	380	247	499	415	270	388	303	358	299	322
GCTTAGTTTAAGTGTA	ref_3416_reverse	17	27	22	24	23	28	20	18	19	23
GAGGTAGAGCCGTTGC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTTCGGGGGATT	ref_3416_reverse	1	6	5	2	2	3	5	4	2	11
GAGGATGGAAGACTCG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGCCCCTTAGTCA	ref_3416_reverse	83	74	100	101	64	71	79	78	56	73
GTCTTCATGGAGTTTG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CCTATTGATGCCGCGT	ref_3416_reverse	8	1	7	7	8	2	4	5	9	5
CTTTCACGGAGCTTGA	ref_3416_reverse	23	16	20	30	24	25	22	18	21	13
TGTTCCCTTTGTGGTC	ref_3416_reverse	16	7	21	16	14	32	15	23	18	19
TTCTGCGGGGGGTCCT	ref_3416_reverse	37	26	51	43	31	58	53	49	44	46
TCGTTGAATCGATTTC	ref_3416_reverse	13	9	22	21	9	16	10	11	11	14
CGGCATGAAAAGCGGG	ref_3416_reverse	67	51	76	72	53	65	35	58	48	68
AGCTTGCGCATTATAC	ref_3416_reverse	24	26	33	30	35	34	45	27	25	21
TATTTAGTATATCGGC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
TGTATCTCATTTTTAG	ref_3416_reverse	63	37	72	35	48	50	52	58	52	58
ATCCAAGTAACTATCG	ref_3416_reverse	118	74	132	107	90	103	82	105	94	101
CTTACGTAGTTTCATA	ref_3416_reverse	30	30	34	29	15	25	25	25	20	18
AAACTGTGGTGATTGT	ref_3416_reverse	55	32	78	50	44	40	34	54	39	43
ATATTAGTGTCACCAC	ref_3416_reverse	54	39	61	43	48	36	54	47	43	38
AACAAGTTTTAGTTAT	ref_3416_reverse	6	5	14	10	4	7	6	13	15	5
AGGGACGAATTTGTGA	ref_3416_reverse	72	53	103	73	57	86	56	65	59	78
CTCACGGTTCGTTGCA	ref_3416_reverse	76	73	105	79	75	87	50	67	64	77
GACGCAACTCTCCACG	ref_3416_reverse	57	34	49	41	36	44	30	44	26	46
TGGTCTATGCGAATGT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCAACTTACTGTT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GGTATGCCCTCCGCTT	ref_3416_reverse	30	29	38	38	34	32	33	37	46	31
CCGGCCCACAGCCCAT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTCGCGGCCTCTG	ref_3416_reverse	14	20	22	23	14	20	16	19	22	20
TCCTTCGTCTCCGCTC	ref_3416_reverse	26	19	30	12	14	29	20	23	20	24
GCGCGGTGGTTTCCGG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GACTTTTCATCTTTAC	ref_3416_reverse	12	5	18	8	12	13	15	3	8	9
TTGTTCAGGGCCACGC	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GAATTGATTATTTGAA	ref_3416_reverse	42	20	53	31	33	29	37	31	28	49
TTCGGCAGGATAGGAT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTCTTCACTGTC	ref_3416_reverse	4	1	3	1	4	2	3	2	3	1
ACTTTTTCCGCACTTT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTGTTACTATCTT	ref_3416_reverse	36	16	24	27	27	29	19	33	24	22
ATAGTGTTAGTCCCCG	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GATACGAACTTACGAT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
GCAAATCGCATGCCCT	ref_3416_reverse	62	37	80	63	42	48	36	62	41	46
TGTTAACATGGCGCCT	ref_3416_reverse	10	3	20	12	4	6	5	5	8	9
GTGCCGCCACTACCGT	ref_3416_reverse	136	135	184	165	140	131	134	149	125	143
TGTATATTGCTGCCCC	ref_3416_reverse	37	31	48	26	27	51	29	31	29	47
TCGGGGAGTGCCATGG	ref_3416_reverse	58	36	68	44	36	49	42	43	50	38
TCAAACCTTATTTTTA	ref_3416_reverse	29	16	35	22	16	31	14	22	17	26
TCGGCTGAAGCAGGCG	ref_3416_reverse	114	96	151	128	99	120	67	145	91	110
TCATAGCTTTAAATGG	ref_3416_reverse	34	35	60	46	36	47	41	32	33	29
TGTGGTCTTGAAGTTT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTATCTAAGTGCT	ref_3416_reverse	62	33	66	51	33	43	38	49	26	30
TCTCGCGATTCAACGA	ref_3416_reverse	289	230	357	290	228	284	216	228	201	211
TTCTAGTCAATGGCTT	ref_3416_reverse	10	5	8	7	4	9	3	10	9	7
CGCGCGATGACGACCT	ref_3416_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAACTGAATCCGA	alt_1338_upstream	325	49	360	222	57	274	60	212	66	298
ACCTATTCGGTTAACG	alt_1338_upstream	152	23	145	112	28	127	21	118	23	137
CGCTGCGAGCCTCGCC	alt_1338_upstream	346	64	436	281	64	342	62	294	67	290
GCTTCTGTCTCGTCTG	alt_1338_upstream	2648	395	3134	2038	447	2444	479	2294	420	2336
AATTGCGACGGTGGGA	alt_1338_upstream	271	35	346	209	37	287	53	267	37	256
TTGGACTCTTGACGGT	alt_1338_upstream	287	63	333	234	48	263	60	231	50	262
AAGTTGCTTCTTTCGT	alt_1338_upstream	539	80	585	368	48	478	84	479	81	410
GTAATACCTAGCATCC	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGAAAATTTCAC	alt_1338_upstream	12	17	16	13	18	14	13	6	19	11
CTCGTATTCAACACGT	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
CAAAATGGTCCCCTAC	alt_1338_upstream	35	27	53	37	32	40	42	42	41	31
TCTGGGATACTTTTGG	alt_1338_upstream	645	115	822	503	110	582	126	638	161	665
CATTGTTTATAGTCCG	alt_1338_upstream	69	11	87	56	13	68	16	54	8	75
GCACTCCGTTCGTATA	alt_1338_upstream	393	71	455	258	73	354	66	366	60	351
TATTGTTCTAGTTTTA	alt_1338_upstream	3	0	8	1	1	1	0	2	0	2
AGGGGGATTTCTGGTC	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGGTCTAGTGTAA	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
TCAACATCCCTTTCGT	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACCATATAGGTC	alt_1338_upstream	179	22	222	160	23	195	30	192	41	145
TACCGTACACCAACCT	alt_1338_upstream	412	78	485	298	95	342	78	355	81	358
CAACTTTGCATGTATC	ref_1338_upstream	108	66	121	97	95	117	93	100	92	106
CCAGAGTTTAGCGTCG	alt_1338_upstream	141	54	166	104	58	128	54	155	64	155
ATTCTAGTGGGGTCGA	alt_1338_upstream	1274	197	1447	1013	213	1082	200	1150	198	1073
CTTGTAAACGTGCCAG	alt_1338_upstream	5	0	5	3	0	4	0	3	0	5
TACCCTTCATGCCATT	alt_1338_upstream	151	30	182	118	36	131	47	149	32	134
CATATCCAAATTAAGC	alt_1338_upstream	278	47	300	187	52	252	47	231	45	214
GGTCGAGGAATCATGT	alt_1338_upstream	131	18	151	102	12	111	19	91	27	97
GAGGACATCGATTCTT	alt_1338_upstream	957	145	1059	749	132	892	167	835	155	839
TATTTTTGCAAGGGTA	alt_1338_upstream	1633	252	1818	1151	248	1444	245	1375	231	1341
TATTCGGAGCAAAACG	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
TGTACCAACGAATTGG	alt_1338_upstream	278	57	337	219	62	279	42	302	74	263
CGCTGGCATCGTCCCT	alt_1338_upstream	580	83	649	456	87	536	83	503	80	489
ATGTGTTGGTCGGACC	alt_1338_upstream	100	18	117	81	16	110	14	76	26	101
CTCTTGCTTTTTTTCG	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
TATACGTCGGTGGCTG	alt_1338_upstream	180	24	206	132	20	160	20	149	20	152
TTCCGTTACGCCCTAA	alt_1338_upstream	389	67	384	301	85	335	73	334	71	305
TTTTAGGAAGGTATAC	alt_1338_upstream	722	113	805	518	114	619	147	556	185	672
ATGTATACCTTGCTAT	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCGGCTCCAGTCC	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGGGGTTGACATC	alt_1338_upstream	363	64	444	289	47	321	74	299	89	305
TCTCAGAAAATAGTTG	alt_1338_upstream	59	13	68	33	24	43	32	53	22	39
CTGCTCGTCTTCGCTT	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCAGCAGGTTGAT	alt_1338_upstream	531	81	680	420	102	554	83	494	109	527
GTGCTCTAGCCCGCCA	alt_1338_upstream	268	34	305	208	33	232	45	225	51	213
CAAGCCAATAATTGCC	alt_1338_upstream	35	14	20	33	19	24	14	41	21	28
GCTCACCGATGTTTCC	alt_1338_upstream	291	54	330	219	48	251	56	231	53	223
ATGTGTGTTGCTAGAC	alt_1338_upstream	266	37	290	195	39	207	55	210	56	200
TTCTTGAGGGTAGTTC	alt_1338_upstream	56	10	58	49	7	51	5	53	9	48
ATGTGCGACCCTATCT	alt_1338_upstream	114	23	138	76	19	109	19	106	18	96
CTGACGGTACTTCCAG	alt_1338_upstream	11	2	6	4	0	4	3	7	1	3
CTGACTATTCGCTTCG	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGGGACTACTAGC	ref_1338_upstream	1091	149	1287	937	194	1059	185	1014	228	1113
GTCCGACTTTGTTAAA	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTTAACTTAGGCT	alt_1338_upstream	35	4	39	24	3	24	8	55	11	34
CCTAGTCGCTGGTTTT	alt_1338_upstream	511	82	596	377	90	456	89	427	96	460
TCGTTCAGCGCGCTTG	alt_1338_upstream	117	13	133	75	17	91	18	82	20	99
CCAATTTCGTGTTATT	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGGTACCACCTCA	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
ATTATTTTGGCGATTT	alt_1338_upstream	2	1	5	1	0	4	1	9	1	3
CTGGGATTTCCATTTA	alt_1338_upstream	75	20	93	62	34	86	27	58	14	64
AGCCGCCCCCGTTAAC	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
ACTACCATTCTCGAAA	alt_1338_upstream	100	55	106	75	61	67	59	68	70	83
CGTACAATCGTAGCTG	alt_1338_upstream	235	31	274	200	38	196	23	170	31	211
ATGCCCTGTCGCCTAT	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
GTGGACGGCACGTACG	alt_1338_upstream	307	39	344	243	48	288	49	243	43	293
TAGAGTTGTAAAAAAG	alt_1338_upstream	47	54	49	49	66	45	70	31	79	38
CTCGTCGTATTACTCT	alt_1338_upstream	210	37	257	155	31	192	44	170	36	195
TACTGTCGCATAGGGC	alt_1338_upstream	24	2	30	14	2	20	4	21	3	30
CTTCAGATTTACTATA	alt_1338_upstream	30	6	37	17	3	24	2	35	6	23
ATACTAGTGGGGTCGA	alt_1338_upstream	1	0	0	0	0	0	0	0	0	0
AGCACACGCCTATCAG	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
GGACCGCGTGTGTACG	alt_1338_upstream	252	36	308	213	56	248	49	202	45	231
CTGAGTTCGTCTAGAA	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
AAGTACCTTGTATAAC	alt_1338_upstream	646	97	766	464	115	516	90	503	94	497
CTTTTCCTCTTTTACC	alt_1338_upstream	775	164	982	582	137	691	177	646	169	685
GCCATGCGGATGTGAA	alt_1338_upstream	47	14	63	52	6	48	10	45	13	66
CACCCAATGCATTCTG	alt_1338_upstream	9	0	6	4	0	4	1	5	0	4
GGGTGCCATCACATTA	alt_1338_upstream	667	108	721	510	107	648	99	549	105	542
ATTGTTGCTCACCCGA	alt_1338_upstream	664	103	836	531	126	643	132	599	116	603
TCATACGGGCGAAAGT	alt_1338_upstream	30	1	22	9	1	19	0	26	6	26
CTTCGCTGCCTTTCTA	alt_1338_upstream	463	60	507	324	65	426	89	365	65	420
AGGTGTGTTTACTTCC	alt_1338_upstream	0	0	0	0	0	0	0	0	0	0
AAATTGGCCTCGTGGA	ref_1338_upstream	36	31	45	37	48	56	39	50	38	34
TGTTGGCCTAACTCCG	alt_1338_upstream	90	12	104	50	9	58	11	54	11	76
TCCGATCTCGCTTAAT	alt_1338_upstream	34	21	36	26	9	29	12	29	17	30
TCATACAGCGATTGTC	alt_1338_upstream	155	26	161	109	29	124	26	124	18	111
TTATTCATTATCTGCA	alt_1338_upstream	686	103	771	508	111	620	105	566	94	579
AACTCTAAACCTCCGA	alt_1338_upstream	1211	199	1311	881	259	1088	224	1027	244	1019
GTGCAGCATCGATTTT	alt_1338_upstream	17	3	11	14	2	12	5	13	4	16
AGCGTTGCTCCGATGC	alt_6079_new	1	6	3	9	5	2	4	2	1	2
TGCCAACCGAGTCTTT	alt_6079_new	8	19	10	17	15	11	29	6	18	6
CCAGTACTCCTTGCGG	alt_6079_new	0	0	0	0	0	0	0	0	0	0
AGACACTGTCGTAGTG	alt_6079_new	0	0	0	0	0	0	0	0	0	0
TTTACTTCGTGAGCCT	alt_6079_new	15	19	17	25	23	9	16	15	20	8
ATCGAGTACGGCCGAG	alt_6079_new	35	60	47	32	62	47	54	36	51	36
TTAAGCCTTAACATGA	alt_6079_new	45	67	72	45	69	49	86	47	97	55
ATACTTCCGGGACTCC	alt_6079_new	30	47	49	51	59	46	60	38	41	29
TTTGCCCTTAACGTTG	alt_6079_new	27	42	23	24	33	26	36	14	38	18
CCGTTGTCCAAATTAA	alt_6079_new	51	102	75	55	83	52	106	73	114	54
ATAGGGTGTTCTAAGA	alt_6079_new	0	0	0	0	0	0	0	0	0	0
CTTCACGTTAGTGCTC	alt_6079_new	34	33	49	15	51	34	38	26	61	27
GGGATGTGGTCCTCAG	alt_6079_new	26	53	27	24	42	30	53	18	43	14
ATGCGATAAGCCCATT	alt_6079_new	56	103	67	60	96	71	112	77	122	46
CTTTTTTTACAAGCGT	alt_6079_new	7	14	4	4	12	5	11	6	8	5
CGCGTGGGCTTAAATT	alt_6079_new	16	30	18	16	34	20	39	18	34	13
ACTTTCTTACCTATTA	alt_6079_new	0	0	0	0	0	0	0	0	0	0
TTCTTCCAGTGTGGAG	alt_6079_new	5	7	11	9	13	9	13	8	8	6
CGACTAGCAGTACTCA	alt_6079_new	1	2	0	3	1	1	5	1	2	1
TCCACCCAGTTAAAGC	alt_6079_new	76	95	92	92	108	57	124	67	134	62
GGATTGGGGACCCTAT	alt_6079_new	0	0	0	0	0	0	0	0	0	0
TTGATTCTTCCACGAC	alt_6079_new	48	70	68	37	79	35	70	52	86	51
AATACGATTATGTTTA	alt_6079_new	94	183	114	114	192	110	178	93	206	93
TCGTCGTGACCTTGTG	alt_6079_new	4	10	1	3	3	2	3	2	9	2
CCTCTTGCGATCACCA	alt_6079_new	8	11	8	7	4	7	11	3	8	5
TACGTGCAGACGTATG	alt_6079_new	11	16	10	15	28	7	14	6	22	5
GGGTGTTGTTTACTCG	alt_6079_new	25	49	28	14	42	14	52	23	43	18
GGGACGTATTTGAAGT	alt_6079_new	14	27	26	22	20	15	34	19	28	11
CCGCACTTCGCAGCCT	alt_6079_new	8	41	12	20	37	16	35	11	34	14
GTGGGAAGTAACATGT	alt_6079_new	36	62	58	54	64	53	41	44	70	40
GTAGCCTTATACAATA	alt_6079_new	35	78	48	39	72	31	86	49	70	27
GATGTGATAAGACGGT	alt_6079_new	20	45	22	22	56	26	55	34	61	22
TTAGTCAGTTGTCCTG	alt_6079_new	29	64	50	35	58	32	73	22	70	26
TAACTTCGGGTCGAGG	alt_6079_new	6	16	10	15	13	17	13	3	22	10
TTTACTAAAGGCATCT	alt_6079_new	5	11	4	8	23	3	8	3	18	15
GGGATACAAACGCCTT	alt_6079_new	19	29	28	29	32	21	34	30	42	30
GAAGTCGCGCCGGACT	alt_6079_new	15	16	13	12	11	11	9	14	21	10
GTGTAGTGAGTAATAT	alt_6079_new	8	17	11	17	20	11	20	9	24	5
CTCCCTACTCAAGGTA	alt_6079_new	12	37	20	15	39	3	42	11	54	2
AGTAGTTTTAACGGAT	alt_6079_new	19	50	32	28	39	26	59	33	61	26
CGCGGATGCCCTTGCA	alt_6079_new	32	102	56	51	105	46	96	45	93	40
AGATTTGCTGTGAGGT	alt_6079_new	42	68	48	40	71	47	72	43	67	30
CTTTAGTACTTCTTTC	alt_6079_new	0	0	0	0	0	0	0	0	0	0
ACTGGATCCCGTTCGT	alt_6079_new	0	0	0	0	0	0	0	0	0	0
TATTGAGTAATCATGA	alt_6079_new	65	96	61	62	80	57	92	54	81	38
GTCCTATAATGTATTG	alt_6079_new	26	42	30	28	54	25	41	18	51	20
CCACATACCTCACCAA	alt_6079_new	0	14	1	1	16	4	8	5	7	1
CTCGATGAGCTCCTTA	alt_6079_new	7	13	10	17	24	13	25	16	26	12
ATCTAATCCTTCCGGT	alt_6079_new	39	49	42	33	56	38	65	25	38	39
CCAGACTGCTAATTGG	alt_6079_new	10	22	9	10	33	9	36	10	21	7
TCAAGGAGGATGGCCC	alt_6079_new	19	42	24	17	51	23	41	24	36	23
ATAACGTTGGGTTTCT	alt_6079_new	13	29	27	20	33	19	25	14	17	15
GAAATTATACCTAAAT	alt_6079_new	0	0	0	0	0	0	0	0	0	0
TGTGCAATCCAAGAGT	alt_6079_new	124	284	159	128	296	150	318	125	303	95
TTGGAAAGGCTACTAT	alt_6079_new	74	145	92	73	152	75	139	65	129	72
ATGTATCGCTAACGAT	alt_6079_new	19	24	15	13	29	17	32	17	29	12
TCGCCAAAGCATTGCT	alt_6079_new	11	37	17	20	31	9	36	12	38	8
TGGATTTCCCAGGGCT	alt_6079_new	16	17	9	11	15	12	24	9	11	8
GTTATTTTTGCAATTT	alt_6079_new	18	23	17	14	24	15	26	10	28	13
ACTAACATCTTTAGTA	alt_6079_new	34	39	54	33	56	31	56	37	60	28
TTCATTATATGCTTTC	alt_6079_new	3	5	7	6	6	5	11	6	4	2
TCAGACCGCCTTAAGT	alt_6079_new	4	7	9	3	13	6	17	6	13	10
CAAGTTAAACTGTGTT	alt_6079_new	36	86	52	36	88	49	83	31	105	36
CTGCACTGCGTACAGT	alt_6079_new	0	0	0	0	0	0	0	0	0	0
AATCTATTACCTTTAA	alt_6079_new	6	14	7	11	17	4	18	10	30	9
CGTTACTCGGTCAGGG	alt_6079_new	19	17	28	22	37	19	29	14	25	15
CTTAGCTGGCCGAACT	alt_6079_new	40	52	27	32	45	48	52	33	51	38
TTTTGGAAATTTACCA	alt_6079_new	20	44	45	33	42	29	50	31	45	24
CCTTAATTCCCAAGTT	alt_6079_new	18	18	18	12	29	13	30	9	38	9
GCAGACCCCAGTAGAC	ref_1678_negative	14	19	21	21	12	20	23	18	17	14
TCGCAATAGCACTGCG	ref_1678_negative	18	27	18	14	31	22	25	25	24	15
TCCGCTATTAAGCTTA	ref_1678_negative	22	20	17	16	25	19	24	27	32	18
CAGACCAGTACGCACT	ref_1678_negative	16	15	14	23	20	15	22	19	12	13
CCCTTCTCTCCTTCTT	ref_1678_negative	165	310	174	141	341	136	277	143	349	142
CGTTGGGAATTTTGAA	ref_1678_negative	22	32	17	26	22	25	22	15	24	29
CACATGGGCACCGGGC	ref_1678_negative	81	106	93	93	72	75	99	77	113	73
AACTGGCTAATTTACA	ref_1678_negative	33	47	29	34	32	32	31	28	31	27
AGGCGCAATTAAGATA	ref_1678_negative	25	29	39	47	33	31	26	27	42	36
GCACTACCCACTCCGA	ref_1678_negative	0	2	0	1	1	1	1	0	6	0
ATTTTAAACACTCTAG	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GAACATGAGTCCACCA	ref_1678_negative	20	32	24	33	31	25	29	17	27	14
TGTTGCCGGGAGCGTT	ref_1678_negative	11	10	29	18	13	13	12	4	27	17
AGTGCACGCCCTTTCC	ref_1678_negative	77	353	111	91	404	73	377	76	382	65
ACCATGTGACTTTTTG	ref_1678_negative	44	55	47	49	63	37	55	47	69	42
CCCATCTCTCCTTCTT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TGCTATACTCTTCTGC	ref_1678_negative	13	18	12	9	17	11	22	4	9	14
GGATGGTTTTCTTCTA	ref_1678_negative	15	22	14	15	24	12	21	19	20	9
AGTCATATCCTCAAAA	ref_1678_negative	17	10	19	12	20	15	14	14	17	15
TTTTCGAGTTTGGGCC	ref_1678_negative	29	33	35	14	34	27	39	26	49	37
TTCGGTATCAACGTTT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TCCGTCTTATATCCGG	ref_1678_negative	6	4	5	7	12	9	6	4	9	6
GAGAGTAACTGTCCGC	ref_1678_negative	3	4	4	4	6	6	9	5	9	4
ACCCTATAGATGCCTC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GAAATCAACGACCATG	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TACTGTAGTTCCCAGT	ref_1678_negative	14	22	19	19	21	14	36	11	30	21
AATAGCGGACTAACGC	ref_1678_negative	30	37	40	34	40	37	54	33	41	21
TTTCTTGATTTTGACC	ref_1678_negative	14	6	15	3	10	10	5	12	9	4
ACTGGAGCCCCGATCA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
AGTAGGTCGGTAGCTT	ref_1678_negative	75	81	83	84	92	68	75	67	76	67
ATGGACGTCCACAGAC	ref_1678_negative	12	7	11	8	5	5	13	10	3	8
GCTGTTTTTGGGGTAG	ref_1678_negative	25	24	21	30	31	13	33	28	35	19
AGTACACGCCCTTTCC	ref_1678_negative	1	21	4	2	30	2	24	1	28	1
CCTCATAGTAGCGTAT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GCGAGAGTTCCCGGGT	ref_1678_negative	8	9	0	10	5	10	7	9	8	4
TCGCTGATGTATAGTG	ref_1678_negative	173	159	196	163	152	133	197	148	179	138
CCATTATCCCTACCTT	ref_1678_negative	1	0	2	0	4	2	4	0	1	1
ACATATACTCGCGCAT	ref_1678_negative	52	64	52	44	62	46	62	51	60	52
GGTATTGACTTCGGGG	ref_1678_negative	36	66	46	44	48	27	38	39	67	38
TTTGGGTGGGTAATCT	ref_1678_negative	2	4	2	3	7	3	6	0	2	2
ATATTTGCGCCTTCAC	ref_1678_negative	25	28	34	21	25	21	32	20	22	26
GCCAACGTCGATAACG	ref_1678_negative	7	13	15	14	14	10	16	4	20	8
ATATCCTTGAATGTTT	ref_1678_negative	54	61	87	43	62	68	65	48	66	42
CATGAATGTCGGCTCA	ref_1678_negative	20	32	19	18	25	30	23	16	22	23
CGAACGACACCCTTTA	ref_1678_negative	23	39	28	33	49	40	34	34	34	31
GCAAGTCTCGTCTCTG	ref_1678_negative	12	20	17	17	10	7	11	10	25	14
TCAGGCGGTCCGACTT	ref_1678_negative	52	82	76	72	90	40	121	66	106	51
ATACGCAGTTTGTAGT	ref_1678_negative	4	6	8	6	3	6	10	5	3	2
ACTCATCACTAGCGGT	ref_1678_negative	50	91	64	58	65	43	78	55	96	58
GCCCCGCTGGGCTAGT	ref_1678_negative	84	86	68	59	84	67	85	60	108	67
AGTTTATCACCTCGGA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CCTATCATGTTCCCGT	ref_1678_negative	3	1	3	2	5	1	9	3	3	6
ATTTACCCTCGAGTAA	ref_1678_negative	45	55	38	53	60	31	50	29	52	22
CATCCTTGATGCGCTT	ref_1678_negative	87	112	117	83	131	102	120	80	130	93
ACGCGCAGGTGTTTTT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GCTATTAAAGCGGTTG	ref_1678_negative	4	1	7	5	5	8	8	8	9	7
TGAACGTATTATCAGT	ref_1678_negative	32	38	43	27	24	22	40	17	34	35
CTTCAGAGTCGTTCCC	ref_1678_negative	142	200	174	142	186	150	213	111	215	118
CTGGCTGACCGGCCTT	ref_1678_negative	20	56	16	21	44	23	39	13	43	20
TTGGCAATTGATATAT	ref_1678_negative	31	24	29	20	18	17	19	12	40	16
CTCATCGTCTCATGTT	ref_1678_negative	19	34	28	28	47	21	40	24	34	26
AGGGTTAATACGAGCC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CACACACAGGGCAATT	ref_1678_negative	12	18	11	15	10	6	14	15	28	11
GTGGTTTTTCGGAGTA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GAATCATATCTCTACC	ref_1678_negative	50	65	58	48	54	63	82	61	69	51
TGTTGCTATGGCACCT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TTGCACTTGGCTGGCC	ref_1678_negative	20	70	47	52	67	27	58	37	76	26
TTTTCACATTTATCTC	ref_1678_negative	41	49	33	41	40	37	32	27	36	30
GCCTCTCCCCAATTCA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CCTTTCTCTACTTATT	ref_1678_negative	4	8	15	5	2	8	5	7	5	8
ACGTGGCTGGATTAAC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TCCGCCATAAGCCGCT	ref_1678_negative	72	53	69	78	72	63	84	54	64	60
GAGACTACTGGTCAGG	ref_1678_negative	12	25	15	16	16	12	26	14	14	16
AACCTAGGCAGTCTGG	ref_1678_negative	31	33	35	27	49	22	37	38	60	34
CCGGCATTAGCTTGAA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CTGGTTTGCTTGTATT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CAAGTTCGACCCCGTC	ref_1678_negative	26	39	23	18	40	16	47	27	55	19
ATTCGTACTTTGCATG	ref_1678_negative	7	8	6	10	7	10	14	10	7	2
CATTTTTCCGTAAAAC	ref_1678_negative	0	2	3	3	7	3	0	2	2	2
GCCACCCATCCATGCA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TTATATCATGGCTCAA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CTTCAACAGAGTGGTT	ref_1678_negative	4	32	3	10	36	4	40	10	47	1
TTCGTTATTGTTGCGT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CAGTGAAGTGTTAGTA	ref_1678_negative	49	64	48	47	64	39	66	39	92	34
ACCTCTAGATGTTCCA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CAGCATCTTTACAAGT	ref_1678_negative	95	150	91	106	151	92	200	95	154	82
CCGCTTCCTGTGCTCT	ref_1678_negative	190	225	259	242	277	202	327	222	302	176
CAACGTTCCTGATTGT	ref_1678_negative	7	12	4	9	15	8	18	4	22	2
AGCCGCTGTTGCATTC	ref_1678_negative	12	30	20	9	32	7	30	14	18	15
AGCTTTTCGGGTATTC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
AGTATGTCCCGGGAAG	ref_1678_negative	8	14	8	9	10	9	13	8	12	9
ACACACTGTATGGGAA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CGATATCTATTAGCGA	ref_1678_negative	65	77	93	71	83	62	96	67	96	61
TTAGTATGATGACTTA	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TTTAGGTTCGGGATGC	ref_1678_negative	48	56	47	40	66	34	46	36	75	40
TGTCCTGTTTCGGTAC	ref_1678_negative	84	106	100	99	126	103	132	68	158	73
GGATGTTGTTAGCACC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
AAAGTTTAGTAAAACC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TGGGCCCGGCTGGCGA	ref_1678_negative	19	21	28	21	30	27	29	16	15	31
GTGTTGTTGCAGTCGG	ref_1678_negative	53	43	48	36	48	33	74	32	63	35
TTTTCTATGTAATATT	ref_1678_negative	9	13	23	12	18	15	13	5	12	11
TGGCGTATCCGACACG	ref_1678_negative	31	45	34	38	44	31	47	37	45	43
CCACTGTTCTGGCTCC	ref_1678_negative	16	26	20	18	21	13	44	15	24	20
CCTAGAGGTATATTGA	ref_1678_negative	6	17	13	23	16	11	16	10	16	7
GAATGACTTGCAATGT	ref_1678_negative	0	3	0	0	1	0	4	0	2	0
TATATCTCCCGTAAAG	ref_1678_negative	21	34	26	28	35	26	42	20	48	32
GTACCCAGAGGATGTT	ref_1678_negative	138	142	136	109	127	121	130	121	121	93
TGACTCCTCGTCAATT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GGTGTGTTATATGTTC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CGTTGTACAAGCGCCC	ref_1678_negative	13	10	16	12	14	8	12	8	15	6
CTCTGGGTGTCAGAAT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TCACTGCCTTCTCCGG	ref_1678_negative	3	4	7	9	13	6	7	6	6	5
GTAGGCTCTCTTTCGT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
CGCCTTCTTCTAGTTA	ref_1678_negative	23	24	27	38	34	22	29	24	21	21
TGCGAATGATATACTT	ref_1678_negative	19	22	37	14	27	26	28	17	36	19
TTATGTCCAGGAAATT	ref_1678_negative	44	56	31	40	47	28	59	35	60	32
AATTTATATCTGTATC	ref_1678_negative	12	5	9	10	7	7	14	4	14	11
GCTGACTGATTGTCTC	ref_1678_negative	39	58	48	39	43	37	39	30	48	27
CGTTTCTGTTGTGCGC	ref_1678_negative	54	111	80	54	93	62	112	60	116	67
GTGCAATTTGACTGCT	ref_1678_negative	32	25	23	24	42	26	44	30	37	13
TCCACATAGACCCTGG	ref_1678_negative	3	3	2	10	6	6	4	7	7	2
GCATCGGGTTCACAAA	ref_1678_negative	52	54	60	59	66	51	71	40	65	43
TGCCATAAAAATCCGC	ref_1678_negative	20	21	13	12	18	13	18	18	20	14
TTCTTAGTTACAAAGG	ref_1678_negative	44	85	66	47	64	50	77	44	72	42
AGTGTTGATCCGCCCT	ref_1678_negative	14	17	16	12	23	12	11	9	6	12
ATCTCCCCTACTTCTA	ref_1678_negative	6	52	1	3	41	7	34	12	43	5
CCTCTAATATGTACCG	ref_1678_negative	26	55	33	37	58	41	80	36	74	44
GGATGCTAGTACGGTG	ref_1678_negative	17	22	15	18	19	21	37	19	27	20
TCCGGGATGCTACTAT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
TAGCCACTAGCTCGGC	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GCTTCATGGCGTCAAT	ref_1678_negative	24	30	45	39	50	21	37	27	52	34
GCATCGTCCTTAAGCA	ref_1678_negative	53	84	107	64	84	55	93	61	97	74
CGTCATGTTATTCCGC	ref_1678_negative	57	66	51	48	63	44	51	38	82	49
GTACTCGGTGCAGTCG	ref_1678_negative	50	52	53	45	60	63	57	42	63	48
TATCTGGGTGTTTCTT	ref_1678_negative	0	0	0	0	0	0	0	0	0	0
GACCTATCCAGTACCT	alt_4832_reverse	65	142	84	67	142	78	129	82	108	63
TGGCAGACGTCTGGAA	alt_4832_reverse	14	16	15	10	12	10	4	8	13	6
ATTGATTTGCTTGAGC	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
GTGAAGAGGTCGCCAT	alt_4832_reverse	6	5	9	11	8	5	3	1	6	6
GGCCATAGCTGTTAGG	alt_4832_reverse	21	43	28	33	38	20	48	15	58	22
TTTCAATGTAGACTGC	alt_4832_reverse	75	94	120	88	132	86	122	74	148	73
GTCCAGCCTGCATGGC	alt_4832_reverse	5	2	3	0	5	0	8	3	4	2
GCAGTGTATTGTGGAC	ref_4832_reverse	17	18	18	11	21	10	27	11	19	5
TAGTGACGTGGAATCG	alt_4832_reverse	14	15	14	10	15	8	19	15	21	13
GCTACCGCCGGATGAA	alt_4832_reverse	9	13	14	10	30	15	27	9	27	11
ATGGTTCTTTAGTCGG	alt_4832_reverse	40	38	26	20	27	19	27	28	38	18
ACGGTAGCAATGCGTA	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCTGGGATTTCAT	alt_4832_reverse	7	9	13	5	5	6	20	6	16	14
GTCTCACCTGTCTATG	alt_4832_reverse	26	45	28	25	62	24	34	25	41	27
CGGAGTTTAATCATTT	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
CCCTACGGTTTTGGTT	alt_4832_reverse	18	51	24	19	33	17	31	18	38	21
TGTGGCCAGGCCCATA	alt_4832_reverse	20	36	29	30	28	12	30	33	42	28
CCCTGGATTCCTTCTT	alt_4832_reverse	0	3	0	1	2	2	5	2	3	0
ACGGGTTATATTTGGT	alt_4832_reverse	56	71	62	56	64	45	72	52	84	51
TATCTCAATAAGTCAG	alt_4832_reverse	15	15	18	16	21	11	19	16	31	14
TTCGTGTCAACAAGGT	alt_4832_reverse	20	18	19	18	25	12	29	8	23	10
GCTAGATCTAGCATAC	alt_4832_reverse	24	35	33	34	40	20	46	23	33	29
TGGTTTGTATAGCGTC	alt_4832_reverse	38	47	50	36	35	33	50	33	50	31
ATCGGTAACAGAAAGC	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTCAGTCTTCTAT	alt_4832_reverse	19	25	35	16	22	19	18	19	27	21
AGGTATTTATTGACCG	alt_4832_reverse	9	16	7	4	13	4	6	6	13	7
TTTTAGACCGGGTAGT	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCGGAGGACACCC	alt_4832_reverse	32	31	25	27	48	25	36	19	30	18
GTTATTTACGGCCCTT	alt_4832_reverse	35	32	25	26	24	30	25	24	25	16
TGTTATGCTGTGCTTT	ref_4832_reverse	1	12	5	10	8	4	11	4	8	4
GTCAAATTGAAAGAAC	alt_4832_reverse	51	81	48	41	92	55	104	46	104	41
TTTGATCAAATGGCGA	alt_4832_reverse	84	71	81	78	68	77	106	53	67	64
CATAGGCACTGCTCCA	alt_4832_reverse	9	23	15	15	17	12	19	10	16	8
ATTCAAATGGTTTAGC	ref_4832_reverse	49	64	51	49	67	38	69	45	61	37
GTCCCTCTGGAGACTT	alt_4832_reverse	25	21	28	29	33	22	20	27	38	15
TAGATGTCCATCCATC	alt_4832_reverse	18	20	10	8	18	14	18	18	24	15
CACCCGGTTCCGGCCT	alt_4832_reverse	18	26	21	20	37	23	30	23	40	20
TACTCGTTTCGGGCAC	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
TCACGGCTCCAGTCTA	alt_4832_reverse	3	3	3	6	3	4	2	6	2	1
TTTCTATGGGAATTTG	alt_4832_reverse	10	6	6	11	8	8	13	7	10	4
TTCAAGTGCGTTAAGG	alt_4832_reverse	13	25	15	20	23	15	27	23	31	8
TGCCCCGTCAGAGAGT	alt_4832_reverse	16	60	30	27	62	26	57	25	51	22
TCAACTACAGTACGAT	alt_4832_reverse	17	25	26	10	23	18	23	11	28	17
AAAGTCCTGATTATTT	alt_4832_reverse	21	15	25	27	22	28	23	21	33	13
CCTCGGAATTGTCGGT	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
GCGCACTGCACCGCCC	alt_4832_reverse	46	50	58	46	61	49	56	35	64	47
TCGTCTCCGACGGATG	alt_4832_reverse	379	492	460	385	518	359	510	346	543	356
CCCGCATACGTGCACT	alt_4832_reverse	28	97	35	26	82	22	104	26	107	15
CGGGCCCCGGTTCTTT	alt_4832_reverse	58	66	64	64	99	47	87	73	81	48
GCTTGCTATCCGTGAG	alt_4832_reverse	28	42	36	29	41	28	33	31	50	26
AAAACTGTATTTGGGA	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGTCATTGTTTGG	alt_4832_reverse	70	78	84	64	98	73	90	50	91	52
GTGTCTAGAGGAACTG	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
CCTATGTCATGGACCC	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTGTTTTCTGTC	alt_4832_reverse	3	6	4	3	9	3	8	4	6	1
CCGCGTAGATACTCGG	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGGCGGTCTGTTC	alt_4832_reverse	58	106	73	62	91	50	86	49	100	57
TGGAACCTCATCGCTT	alt_4832_reverse	24	31	19	18	14	31	31	20	35	13
CAGGAGTCAATTCATC	alt_4832_reverse	12	28	24	26	18	15	30	11	36	17
CACATAAAATCCTGTT	alt_4832_reverse	61	93	79	101	90	87	68	84	108	68
CTGGCTTCTGCACCAT	alt_4832_reverse	19	17	26	21	22	24	42	27	43	12
CCAATGTTGCGTTGAC	alt_4832_reverse	8	68	10	10	52	9	72	6	65	13
CTTATGATTACTAGGG	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTAATCAGATAGG	alt_4832_reverse	65	98	91	66	77	80	103	79	115	61
TGTCCCTAGTGTTTAT	alt_4832_reverse	4	2	4	5	5	3	7	5	4	2
TTGAAGGCGCGCGATT	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GCATACGGGCTTTCAG	alt_4832_reverse	0	0	0	0	0	0	0	0	0	1
CCGAGGATGAGTAGTA	alt_4832_reverse	3	17	11	6	4	12	15	10	20	11
AGACTTGTTGCTGAGT	alt_4832_reverse	14	31	24	14	20	17	23	20	17	14
AGTTCGTTGCGTAGCA	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
GCACGGGCATCAGGCC	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTTTTGCCCTTCG	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
TAATGGGACGGTAACG	alt_4832_reverse	20	27	37	27	31	13	29	18	20	17
TCTCCTTTTTTCGGGG	alt_4832_reverse	5	16	13	13	15	5	21	11	19	8
GTGTACGTTAGTACTA	alt_4832_reverse	16	21	20	17	25	15	28	11	21	12
CAATGAATGATTCAAA	alt_4832_reverse	37	47	33	34	52	35	53	34	48	34
ATAAACCGGCTCCGGC	alt_4832_reverse	4	12	11	4	12	2	12	6	8	8
TCTATGTTATCGCTAG	alt_4832_reverse	6	10	7	7	11	2	12	5	7	5
CAGTGGCGTGTGAAAA	ref_4832_reverse	74	82	76	73	94	68	96	74	99	66
CTGGTAGAAGCTTCAA	alt_4832_reverse	19	36	25	19	23	21	42	29	25	24
CACAAAAGCTCGGCTC	alt_4832_reverse	30	28	27	22	30	28	43	13	35	22
TGCTAGTTGCGTTTTC	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCGATTTCTATTA	alt_4832_reverse	27	35	32	17	38	30	47	30	38	30
AAATGTCTTCTCTTAT	alt_4832_reverse	55	54	62	59	67	62	52	42	61	55
TCTTCTGCCCTTAGGT	alt_4832_reverse	257	323	322	270	296	269	357	241	382	238
CATTGTTTTTTACTCT	alt_4832_reverse	41	54	44	31	51	36	49	30	51	30
TGCCATCCTTGTAAGT	alt_4832_reverse	1	2	1	1	1	0	0	0	2	1
ATGAGTGGGGATGGCC	ref_4832_reverse	8	7	9	12	10	4	14	5	9	10
AAGGAGTCAATTCATC	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGGAGTTTTATAC	alt_4832_reverse	23	52	42	36	44	25	45	41	44	41
CGATCGACTATTCACT	alt_4832_reverse	2	9	1	1	15	1	12	0	11	1
GCAGGATAGCGCGCTT	alt_4832_reverse	33	34	30	18	34	29	27	37	43	23
GATGCAATGCCGCAAC	alt_4832_reverse	22	33	34	19	36	18	28	20	32	21
CTTGCAGTTTGGCTCT	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTCTATAGGTCA	alt_4832_reverse	8	18	3	11	10	11	12	11	7	6
TTTAGGCGAAATAATC	alt_4832_reverse	17	19	19	18	14	7	23	18	18	17
GCCCCGGTGGTTGCTT	alt_4832_reverse	19	15	23	10	28	14	23	16	26	18
GGTCCATCGACCGAAC	alt_4832_reverse	8	16	14	9	5	7	16	15	9	9
CTAATTCTCTGAGCAT	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
CACATTTCTGCCTAGT	alt_4832_reverse	4	12	7	1	13	12	8	1	22	10
TTCGAGCCTGGTGGCG	alt_4832_reverse	4	6	2	7	3	4	3	5	2	0
ACCGGTACTACCTGGC	alt_4832_reverse	6	54	11	9	58	3	48	5	48	6
TAAAGTTATGATCCTT	alt_4832_reverse	30	33	27	20	23	20	36	17	33	27
TCTCTTCTATCTAGGT	alt_4832_reverse	8	4	9	11	4	7	9	13	11	4
GCGTTTTTTGAGTTCT	alt_4832_reverse	23	26	15	12	23	17	33	11	32	19
CTTTCATAAGTTGCCC	alt_4832_reverse	12	18	22	11	20	12	21	9	13	8
TCGCGTCGGATGGCGG	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
ACGCAGATCTCTACCC	alt_4832_reverse	7	5	6	3	8	6	5	9	3	7
TAGAATGGCGCCTTAT	alt_4832_reverse	28	37	27	12	40	14	29	30	29	18
TTCTCCCTGTTCACAT	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCTGCCCCAGACA	alt_4832_reverse	25	42	30	43	37	27	46	31	51	27
AGTTGGTGCACTCCCT	alt_4832_reverse	4	18	7	10	8	5	14	6	21	6
AATTACCCGCCCCCTC	alt_4832_reverse	2	7	5	2	2	1	4	1	2	3
TCTTCTCCTAGGTTCC	alt_4832_reverse	12	7	8	5	8	4	11	2	8	7
ATTTATTTTCGGGAAC	alt_4832_reverse	69	92	80	83	89	58	91	57	90	64
TCGCCACGTCTAGGCT	alt_4832_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTAGATCAAGAAG	alt_4832_reverse	58	109	76	60	94	69	78	52	85	48
TCTTCATATGGATGCT	alt_4832_reverse	32	62	47	47	51	31	51	36	72	49
GCCCCCGACGCCCGCT	alt_4832_reverse	8	2	4	4	7	3	7	7	0	6
TTTGCGTCTGCACATC	alt_4832_reverse	4	5	9	6	10	8	4	7	9	1
TCCTTTTTCCTTACCC	alt_4832_reverse	7	20	18	14	25	13	30	18	27	17
GTTCCAGACCGCAGAC	alt_4832_reverse	5	16	9	4	17	5	14	6	15	5
TGCTAAGAAAGTAAAG	alt_4832_reverse	8	18	7	13	11	6	19	8	14	15
GCCTGAAATGCTGTGC	alt_4832_reverse	4	13	3	1	15	3	16	4	14	4
CGCTGTTGCCAGAGAG	alt_6110_new	0	0	0	0	0	0	0	0	0	0
TTGCCTACGTTCGGTT	alt_6110_new	22	10	18	10	18	8	15	6	10	10
CCCCGGTTAGCAGGTT	alt_6110_new	35	65	47	34	78	30	68	17	71	34
CTTGCGTCGTGCCTTA	alt_6110_new	9	15	11	10	7	7	12	9	11	9
CAATCTCTTTAGTGGT	alt_6110_new	0	0	0	0	0	0	0	0	0	0
CGCGTCGGTGTCTCAT	alt_6110_new	3	6	13	14	15	9	14	3	11	8
TTTATACAGGTGGTTT	alt_6110_new	88	106	134	91	127	75	102	104	118	80
AGATTTTGCCATATGC	alt_6110_new	0	0	0	0	0	0	0	0	0	0
TAGATAGGTGCCTGAT	alt_6110_new	0	0	0	0	0	0	0	0	0	0
CAAGGAGGCAAACCAA	alt_6110_new	64	66	83	79	77	45	88	69	95	64
ACTTAGTATTGGCAAC	alt_6110_new	39	58	68	27	71	44	62	36	70	41
GACTTCATCGATGGTC	alt_6110_new	58	58	78	43	50	42	67	49	66	53
ACTAGCTGTAGGTCGC	alt_6110_new	51	50	54	49	89	44	62	38	68	31
AATTGATCTCAGCCCT	alt_6110_new	0	0	0	0	0	0	0	0	0	0
TCGGCGTTCGTATCAA	alt_6110_new	26	23	32	13	32	21	35	27	38	20
CCGTTCAATTAGTTTC	alt_6110_new	0	0	0	0	1	0	0	0	0	0
TGCGTAGAGTGGATCT	alt_6110_new	28	25	23	29	37	29	27	23	22	23
GTCCATAAGTAGCTGA	alt_6110_new	0	0	0	0	0	0	0	0	0	0
GATACCGCTTCTGATT	alt_6110_new	49	64	64	44	66	46	61	56	84	43
TTCTTCAATGGTTGGT	alt_6110_new	63	71	74	79	74	87	93	54	94	56
ACATACTGTCGGTCTG	alt_6110_new	73	83	64	74	82	52	83	65	81	49
CAAAGACGCTTCACCT	alt_6110_new	14	21	12	18	23	19	17	13	14	12
TCACTTTTTCGTCCCT	alt_6110_new	0	0	0	0	0	0	0	0	0	0
TAAATTCCATTGACGC	alt_6110_new	0	0	0	0	0	0	0	0	0	0
GGGTTCCCTTCCCGAC	alt_6110_new	78	114	92	88	120	78	100	74	101	64
ATGAACGTCGCTAATC	alt_6110_new	7	14	11	10	12	7	12	7	19	1
TCTTCTTCAGGATGCG	alt_6110_new	224	276	227	252	322	199	307	200	296	206
TTGCAATAATGCTAAA	alt_6110_new	0	0	0	0	0	0	0	0	0	0
GCAATACATGGTTCTT	alt_6110_new	21	36	19	30	25	33	33	29	39	24
TTTACTGGCTAGTGGG	alt_6110_new	5	4	3	9	6	6	1	6	10	5
ACAGTGTGTGGTCCTC	alt_6110_new	14	25	27	23	31	23	23	16	33	15
TTCATACTTCTCCTTC	alt_6110_new	112	136	196	132	170	134	149	137	156	134
TGAGCGTGACCAAGCT	alt_6110_new	12	9	9	4	5	9	4	8	9	11
ACTAACCTTCACTCCC	alt_6110_new	1	13	0	0	11	2	12	1	10	5
TAGAGGTCTCAGCGGG	alt_6110_new	82	134	137	113	125	96	124	93	151	85
ATGTTAGAGTATTGTG	alt_6110_new	20	20	25	23	25	17	29	15	20	18
CAGTCGCCTGTCGAAC	alt_6110_new	20	35	29	28	34	32	39	23	45	19
TATTATCCCCTATCAT	alt_6110_new	24	34	30	27	38	40	30	27	43	22
CATCTAATGTATGCGT	alt_6110_new	32	33	39	26	30	24	30	18	29	26
CGTTGTATCAAACCAT	alt_6110_new	0	0	0	0	0	0	0	0	0	0
GTCTCTACAGTTCATC	alt_6110_new	0	0	0	0	0	0	0	0	0	0
TCGAAAACGCCCGACC	alt_6110_new	56	63	63	46	78	68	71	44	81	56
CGTAGTGCATGTACTG	alt_6110_new	6	6	10	9	9	8	15	6	10	6
CATGAAATCCTCGACC	alt_6110_new	95	97	106	82	86	95	117	77	117	71
CCCTTCTCGGTATAGG	alt_6110_new	275	354	363	297	345	289	377	272	360	276
TAGGCTGGCCACTCGT	alt_6110_new	6	2	3	3	3	4	8	0	1	9
GTCATCGCGCCTCCAT	alt_6110_new	0	0	0	0	0	0	0	0	0	0
CGCAGGTATATAGTAA	alt_6110_new	126	114	115	132	124	115	159	97	148	75
TCGCCTCCCCTATTGT	alt_6110_new	8	29	10	10	29	8	38	8	30	12
GATCTACAGGATTTTT	ref_4769_missing	5	6	6	8	4	10	4	9	9	4
GATTGGTCAAGAGTTT	ref_4769_missing	49	56	46	34	51	34	50	48	52	45
TACGATAACCCCACAA	ref_4769_missing	0	0	0	0	0	0	0	0	0	0
ACATACTCGCCTGTAG	ref_4769_missing	5	13	7	3	8	5	12	7	10	5
GAATCGCGTCCTTGCC	ref_4769_missing	0	0	0	0	0	0	0	0	0	0
ATTCACTGAGCGCCGC	ref_4769_missing	14	8	4	9	8	7	8	2	2	10
ATCCCCGTTTCTGATC	ref_4769_missing	12	25	16	10	23	11	19	9	30	12
TATTTCCCCTCTAGAA	ref_4769_missing	0	0	0	0	0	0	0	0	0	0
CCCACAGGGTTGCATC	ref_4769_missing	94	112	105	102	106	104	112	95	119	64
GCGCCAAATGCTCTGC	ref_4769_missing	115	138	187	110	138	126	130	129	135	106
CCGGGTGGCCGCTACG	ref_4769_missing	0	0	0	0	0	0	0	0	0	0
AGGGGTAAGCCCCGGG	ref_4769_missing	11	20	27	18	14	9	25	17	15	18
TCCCACAAGCTTTGCT	ref_4769_missing	27	22	28	30	23	24	25	24	31	24
TCATAGATGCATCCCT	ref_4769_missing	58	74	73	68	94	78	89	67	88	52
GAGGTCAGGGTGCGTT	ref_4769_missing	4	2	1	7	2	2	1	2	6	4
TAATACGATTACCCGT	ref_4769_missing	19	14	26	12	12	16	19	16	19	19
ACGAATTTACTGCCTT	ref_4769_missing	39	34	59	66	42	38	55	46	44	31
CGCTGGTAAACTTATC	alt_4769_missing	6	22	14	9	13	7	16	11	24	10
CCTACACCTCCTAGTG	ref_4769_missing	10	14	7	7	15	5	13	7	8	6
GTTCGAGGCACGGGTG	ref_4769_missing	10	11	16	6	8	6	8	8	12	10
AATCACGTTTGGCTAG	ref_4769_missing	14	21	26	13	22	27	23	9	35	17
ATCCGGCTTTCGGCCC	ref_4769_missing	0	0	0	0	0	0	0	0	0	0
ATATCTGTCTTTGGAG	ref_4769_missing	35	41	39	42	43	33	49	31	43	40
GGTATATACGGGTTGT	ref_4769_missing	3	3	2	1	1	5	3	2	3	1
GTGGGAGGCGGTGTTC	ref_13_reverse	16	14	18	9	26	11	19	10	11	5
GGATAAATGAATTAAC	ref_13_reverse	105	140	132	89	118	119	142	97	155	88
TACTACCGTCTGCTGT	ref_13_reverse	59	99	77	91	117	58	108	61	93	70
ATCTTATTTTGAGGCT	ref_13_reverse	23	27	26	22	23	26	32	22	43	21
CCCAATTGGTGGAGAT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTCTTACCGCTGT	alt_13_reverse	92	141	128	92	121	108	143	75	153	92
CATCACCTAATGCGCA	ref_13_reverse	6	14	13	4	14	12	12	10	7	7
TCCATGTAGCCAGATT	ref_13_reverse	111	152	138	90	183	107	181	110	205	108
TATGTCATTAAATTAT	ref_13_reverse	74	127	91	79	113	86	99	91	93	85
TGCCTCCTGTTGTCGC	ref_13_reverse	13	12	5	11	17	5	18	8	25	11
TGTTGTTTGAATGAGC	ref_13_reverse	45	58	66	56	58	51	75	44	80	42
TGGGACGCCAACGATC	ref_13_reverse	14	3	7	9	4	7	8	6	10	6
CCTAGAGTATCCTCTC	ref_13_reverse	2	10	14	2	3	3	5	4	12	4
TTCCTAGCCGCTTGGA	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGCCTCAACGCA	ref_13_reverse	5	13	14	7	9	3	11	9	4	9
GTACTGGTCGATCTAG	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTGATCGTCGTTA	ref_13_reverse	91	109	113	90	116	84	142	81	137	86
TAGTAGTTCATGGTTT	alt_13_reverse	4	8	2	3	4	3	7	5	4	2
GATTTCATTAGATTTA	ref_13_reverse	5	12	8	7	5	18	9	10	12	8
CGATCTTTCGTTCGTG	ref_13_reverse	50	61	51	35	77	47	59	47	102	36
AGTGTTTTCTCCTCTG	ref_13_reverse	21	28	22	23	26	26	33	25	38	25
AACTCGAAATGACCGG	ref_13_reverse	18	32	37	26	30	20	46	19	46	26
GACTATATAACATCTT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GTACGGCCCGTCTCGA	ref_13_reverse	37	65	30	28	74	19	71	29	70	23
GTCTCCCTTCCAGCAC	ref_13_reverse	67	122	78	68	111	57	117	64	109	54
TTACAGGTCAACGCTT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
CGGACCCCGGGCCCAG	ref_13_reverse	39	47	49	46	52	52	49	36	55	35
CCGTTCGTCATGTTTT	ref_13_reverse	6	7	1	3	4	3	8	3	5	4
ATAATGTGTTCGTCTG	ref_13_reverse	27	34	30	32	45	15	41	20	44	21
GGGCACTTAGGACTTC	ref_13_reverse	10	10	10	11	8	7	12	6	13	8
AGTAGGGTATGTATTC	ref_13_reverse	155	196	214	128	205	159	238	151	207	146
CTTTGACGTTACCGGT	ref_13_reverse	49	98	81	55	99	57	87	62	90	50
CTTGACATCTTCGAAT	ref_13_reverse	45	59	38	47	73	42	62	40	80	43
TACCACTCGCCTACTG	ref_13_reverse	31	45	29	22	44	21	52	24	48	12
GAAATACAGGCCCTGT	ref_13_reverse	11	14	11	7	7	8	16	7	20	8
GGGTCTCTTGTGATTT	ref_13_reverse	1	1	0	2	1	0	3	0	2	0
GCGTTCTGCCCACACC	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTGGGACGTTGAT	ref_13_reverse	38	33	28	24	42	28	35	39	42	22
CCACTTCGTAAAATAA	ref_13_reverse	30	78	42	42	81	41	94	38	97	22
CTACAGATGCTAGCGT	ref_13_reverse	6	16	4	10	19	8	12	8	17	4
GCGACACGGAGCTACA	ref_13_reverse	110	146	130	121	143	98	146	120	140	104
GTAGATTACAATAAGT	ref_13_reverse	12	13	13	11	20	16	8	18	22	14
TTTACATGGGGGCCAA	ref_13_reverse	8	14	2	6	4	7	6	7	12	6
CTCTAGTTTCCGGGTA	ref_13_reverse	91	157	114	141	183	101	169	105	179	88
CAATCGGCAGGCTCAA	ref_13_reverse	25	31	35	24	36	22	33	30	34	29
TTCGCTCCTGGTGCTT	ref_13_reverse	23	20	21	19	27	19	34	26	18	20
GGCATCGCGAAGGCAT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
CACAACCTATCCTTTT	ref_13_reverse	10	21	14	17	25	13	21	15	23	17
GTACACGGGATCTCAG	ref_13_reverse	82	81	94	71	114	76	98	65	105	53
TTGAGAAATGGGCTTT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
AGCGAGGGTATATTAC	ref_13_reverse	8	5	11	13	19	11	18	5	19	9
GGTCCACTTATTTGGA	ref_13_reverse	34	36	27	39	47	27	58	33	47	15
ATTCACATGCGGCATC	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCATTACTAGCA	alt_13_reverse	327	510	401	334	524	298	516	272	521	301
GGGTCGGTGCGATTAA	ref_13_reverse	8	10	8	7	16	6	15	12	21	1
GCCAATTTTCATCACT	ref_13_reverse	11	25	16	19	14	16	19	10	21	8
GGTTTGTGACAGCTTG	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGTTATGTGCGTA	ref_13_reverse	14	23	14	10	27	14	22	7	13	6
GACCGTGCCCAACAAA	ref_13_reverse	161	227	232	195	288	187	251	136	277	142
TACCTCTGGGCATTGG	ref_13_reverse	25	38	34	24	43	23	40	22	58	21
TGATATCTTCCGTTTG	ref_13_reverse	5	4	12	7	5	4	11	8	7	7
ACCCTCCTCGCCGTAT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCGCGATCAGGCC	ref_13_reverse	15	21	17	14	24	16	30	14	25	21
TGCGTATTGCCTGGTT	ref_13_reverse	9	17	6	10	23	7	12	0	5	3
ACTAACGGTGGATGGG	ref_13_reverse	14	30	48	23	34	20	23	26	28	27
GTCAATCGTGTCGCTA	ref_13_reverse	26	58	25	20	35	32	59	26	62	26
ACTGCTGTATGTGAGT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
TATGAAGATATGATCT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTGGATTGTCCTT	ref_13_reverse	108	163	123	114	132	111	184	109	190	108
TGTGCCTAACATGTAG	ref_13_reverse	9	26	11	19	27	11	22	12	12	14
CTCAACCTGCTAGTTT	ref_13_reverse	7	11	4	3	10	3	13	10	12	1
ACGCCAAACGTTACTT	ref_13_reverse	6	11	12	5	16	3	6	7	10	4
TTCTATCGCATCCTAT	ref_13_reverse	6	3	6	4	5	1	10	3	7	5
TTTGTTCTGACGCTAA	ref_13_reverse	47	70	66	42	58	47	54	29	62	47
TACCTCAGATGTGTTG	ref_13_reverse	60	110	75	50	109	61	94	61	118	65
ATTTGAGGACTAACAC	alt_13_reverse	47	79	62	61	64	45	64	51	90	52
GTTTCCCACCGTACGG	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGCCGCCTCTTAG	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTTGATATATTGG	ref_13_reverse	28	25	24	31	37	21	39	24	34	27
TCACTGCTCTCTATTA	ref_13_reverse	31	44	34	26	29	26	32	29	41	27
TTGACTGATGGATGCT	ref_13_reverse	1	5	2	2	3	2	3	2	6	1
TTCTTTGGCTGCCAAG	ref_13_reverse	15	12	11	11	12	10	26	12	14	13
GTCTTCAATGGTGCTA	ref_13_reverse	31	29	28	22	31	23	27	20	29	28
AGCTACGGATTAGGCT	ref_13_reverse	64	94	86	63	93	63	93	70	90	47
TTGTCATTGCTCTGGA	ref_13_reverse	12	8	11	10	19	11	16	10	13	9
TTCTAACGTCGCCGGT	ref_13_reverse	60	88	89	52	104	66	104	58	59	63
ACGTGCCACCCACGAT	ref_13_reverse	15	32	17	18	23	11	25	14	23	11
CAAATTTTTGTAGTGC	ref_13_reverse	12	15	20	11	23	7	17	5	21	13
CTACTTGGCCTGAGGA	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GCGCACAGTGAATCTC	ref_13_reverse	11	17	7	15	14	14	22	12	13	10
TGGTCTGACACCCGCC	ref_13_reverse	98	77	91	53	106	76	91	64	110	62
TAGTTTTTAACACCTT	ref_13_reverse	10	37	26	20	19	18	30	18	19	11
AAGAGATTACTTTCTT	ref_13_reverse	7	10	9	7	10	10	6	5	11	9
TCTCGGAATCTTTCAA	ref_13_reverse	89	89	114	88	120	94	83	81	102	65
CCGTCTGATCTTGCAG	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAACACAGTGACC	ref_13_reverse	22	18	17	11	13	11	21	16	25	10
GGCGCGTGACTCGTGA	ref_13_reverse	36	40	44	32	42	40	41	33	51	41
TTTGGTCCAAAATCGC	alt_13_reverse	61	104	94	70	87	60	127	58	123	55
AAGCGCACTTTCTTCA	ref_13_reverse	11	14	8	10	13	12	13	7	14	10
TTCCCGAGATGCAACG	ref_13_reverse	58	88	84	69	97	72	96	59	83	60
GGGCTTCTCGTTTTCA	ref_13_reverse	31	25	23	20	24	28	26	30	33	19
ATTCTGGTGGTTGGTT	alt_13_reverse	1	6	4	0	2	2	4	3	9	1
GTGTTTCGGCTCCCTA	ref_13_reverse	7	18	7	14	12	16	11	10	16	12
CTTCTTACCGCCCGGT	ref_13_reverse	39	55	59	47	64	49	72	44	67	38
CGCACGTTCGAACCAC	ref_13_reverse	12	25	13	12	23	15	16	18	13	20
GTGTGCTTTAGAAGCC	ref_13_reverse	15	14	8	10	13	7	23	3	12	8
CAAGACTTCCGGGAGC	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
CCATGCCCCCTCTTTA	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGAGCGTCTTGTA	ref_13_reverse	7	3	4	4	8	6	6	1	5	2
ATGTCGTAGGTGGGAT	ref_13_reverse	33	48	46	45	37	28	48	25	52	20
TTGTTGTCGATCATTG	ref_13_reverse	2	8	3	2	7	8	5	3	4	8
TCTACAAGCGTGTTTG	ref_13_reverse	29	55	45	37	53	36	48	32	60	20
AATTGCCGCTGCTTCG	ref_13_reverse	78	117	86	75	103	70	95	76	102	71
TTTTTAGTTTTAAACT	ref_13_reverse	35	52	29	38	40	40	29	34	56	33
ACCGCCATAGTGGTCC	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCTGCTTGTTTCC	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
ATCCATTCTGTCCAAA	ref_13_reverse	41	50	36	33	62	39	61	31	51	38
TCGGGCAGAAAAGTCA	ref_13_reverse	3	12	7	8	11	4	10	4	13	3
TCGATTAATTACACTT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTATACAGGTAGC	ref_13_reverse	41	63	64	39	56	58	72	44	64	36
TCCGACTTTGTAAAAT	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
GAAAGCGTTTCATCTA	ref_13_reverse	46	57	24	28	56	28	57	30	54	26
CACCCTCGTTGCGTGG	ref_13_reverse	1	0	2	0	1	0	3	0	0	0
TTCAGTCCTAGTCAAT	ref_13_reverse	57	88	73	44	79	50	92	52	79	50
AAATCTGCGTCTAGCG	ref_13_reverse	25	35	34	27	48	32	49	19	38	16
AGTAGCTTGTATAAAC	ref_13_reverse	40	33	28	34	35	24	45	26	42	23
GCAGGAAGCTAGTGTG	ref_13_reverse	25	16	21	17	27	22	22	13	28	13
TCGATCGCGTCTATAT	ref_13_reverse	16	29	27	14	36	20	44	24	42	15
TCTACACGTATGTATC	ref_13_reverse	18	43	24	28	29	21	38	26	37	21
CATCGGCAATTTGAAT	ref_13_reverse	60	93	63	71	79	61	110	50	92	42
GAAGTCCAAACTTTGG	ref_13_reverse	6	22	14	11	16	6	11	9	9	7
TCACGGACGTACGTCT	ref_13_reverse	36	69	54	46	69	50	58	36	81	38
TCGGTGCGATGTATCA	ref_13_reverse	8	16	6	10	13	8	15	10	22	14
GGCCGAGACCATCAAT	ref_13_reverse	27	42	40	35	45	34	47	28	63	29
AGTCTCAAAGCGCCTG	ref_13_reverse	35	41	50	37	65	35	59	26	54	35
TAACCCTATCCTTACT	ref_13_reverse	17	18	12	12	29	12	29	17	14	16
CGGGATCGTGCTCAAG	ref_13_reverse	20	16	14	7	17	12	13	12	7	9
CGCGGTTTCCCTCGCA	ref_13_reverse	0	0	0	0	0	0	0	0	0	0
ATGTATATTAGGCCTG	ref_13_reverse	8	2	2	5	10	3	6	4	11	1
CATCGCTATACTCGTA	ref_1402_reverse	44	36	62	64	23	38	26	42	41	35
TTTGTTTCCGTCTGTC	ref_1402_reverse	7	9	11	17	3	14	14	11	10	8
GGGTTTTCAAACAATC	ref_1402_reverse	12	15	19	12	13	19	12	7	16	13
CCCGTACACCTCCATT	ref_1402_reverse	1	1	3	1	1	0	6	1	2	0
GTTACTTCGGAATTAG	ref_1402_reverse	110	74	133	112	78	92	59	105	79	97
AGCAGTCATGCGATCC	ref_1402_reverse	30	11	15	18	17	20	21	23	12	11
CCAGCCATTTTGCATA	ref_1402_reverse	2	2	0	0	1	0	1	0	2	0
ACATATATTCATGATC	ref_1402_reverse	166	119	229	186	105	190	116	148	151	143
CGTCATGACGTTGTCC	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACTGGCCAAACCGGCC	ref_1402_reverse	17	29	21	22	28	7	26	11	36	14
CCGTTTAATTATCGAC	ref_1402_reverse	20	30	28	21	35	22	21	19	25	11
AATGTTGTATAGGCTT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CACTTCGGACTCGAGT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCGCGCTCGAGGC	ref_1402_reverse	38	26	53	50	36	29	28	41	33	39
AACTTTCGGCGCTGAG	ref_1402_reverse	30	25	31	21	27	33	22	31	33	39
TCAGGCCCGGCAAATC	ref_1402_reverse	5	2	10	6	5	5	7	1	2	4
TGTCTGAGATAACGCT	ref_1402_reverse	26	20	37	29	18	26	23	26	15	22
GTGCAACTTAGGAGAA	ref_1402_reverse	61	86	85	84	104	82	65	75	55	68
ATATAACTTGGTTTCA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTTGTTAATCATT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACGTCTATGCTTAGAC	ref_1402_reverse	14	18	14	29	16	17	19	12	35	18
TAGTCCATTACCGATC	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTTTATCTCACAA	ref_1402_reverse	15	9	13	9	7	18	10	16	10	16
ACTCCTAAAATAGAAT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGCGTCTACACTT	ref_1402_reverse	18	17	19	18	19	24	14	19	13	12
GCTGTGACGTCACATT	ref_1402_reverse	22	16	22	24	19	26	16	25	29	30
GGCTTTGATACTGCGG	ref_1402_reverse	31	21	25	32	34	24	19	24	23	33
GTGGCTTTGCGTATTG	ref_1402_reverse	18	24	22	15	21	15	22	10	22	12
CGTTAGTAATTTCTAA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGGACTGTATGTT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTTGAGTGTAGC	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGCGCTGATGTGG	ref_1402_reverse	59	46	85	66	50	63	59	60	53	39
CTATTGTAATCCATTG	ref_1402_reverse	84	47	89	81	52	86	54	68	75	89
GAAATTTTCGATTGCC	ref_1402_reverse	77	46	101	88	61	81	62	84	70	88
ACTGTTTGTCCCCGAT	ref_1402_reverse	12	4	17	14	7	11	11	10	14	11
TCGTGTCGGCACATGG	ref_1402_reverse	54	24	80	60	36	51	43	53	47	55
GACACAGGCAACTTTG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CACAACGCGGAAGCAA	ref_1402_reverse	38	24	48	34	30	35	26	36	34	40
GAAAAGGACTTGGGTG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CGTAGGTCTGTTCGCT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GGAATTTACTGGGAGG	ref_1402_reverse	121	73	163	123	62	127	73	124	85	112
ACTGGGCTTTGGGTGA	ref_1402_reverse	21	18	34	26	22	16	20	28	27	29
TATTCGCTGTCGTATG	ref_1402_reverse	25	20	41	37	16	30	19	22	14	23
TATTCGCAAGTGGGGT	ref_1402_reverse	27	18	35	32	24	28	19	25	19	35
TGGCGCACGACTCCAT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CTACGCACTTTAGTGA	ref_1402_reverse	34	43	59	60	51	40	43	54	72	36
TCAAGCAGTGTTCCGC	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCCATGGTATGCG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CGGGATCCTAGTTAAA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
AAGGGCGACATGGAGA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GGATCGTCCGTGTTGT	ref_1402_reverse	55	35	51	37	22	39	24	34	32	36
CGCCCAACCACATTTA	ref_1402_reverse	6	14	15	10	13	15	17	9	10	5
ACTTTATCCACGCTCT	ref_1402_reverse	48	32	64	41	45	41	29	35	30	46
GTGCATTCGTGTGGCG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTAACGCTCCTCA	ref_1402_reverse	15	18	17	31	16	27	14	21	23	19
ATTTTACTATCAGGTG	ref_1402_reverse	56	34	67	39	42	48	48	49	55	49
AGATCGGTAACTCTAA	ref_1402_reverse	130	93	147	129	88	135	98	124	101	117
GATTTATAGGTTCCCT	ref_1402_reverse	15	6	14	8	7	12	5	11	8	5
TGACCGGACTGATACT	ref_1402_reverse	110	95	131	121	92	104	74	106	84	102
TGCGCCGAGTGTCTTT	ref_1402_reverse	21	26	35	27	19	26	20	23	23	21
CATTTGCTTATTCCAT	ref_1402_reverse	136	131	140	137	102	147	109	125	127	117
CATTAGGGGGAAACGT	ref_1402_reverse	35	10	33	42	13	20	10	17	10	30
ATGCACTTTAGTTGGT	ref_1402_reverse	25	13	43	39	23	21	18	33	25	41
TAACTGTCGTTGCTTG	ref_1402_reverse	67	59	79	69	57	62	65	57	53	61
TTCTTGTGCATGGGTA	ref_1402_reverse	71	48	73	75	55	66	52	66	63	65
TCCGCTAGCAATTGCA	ref_1402_reverse	44	39	48	42	32	47	41	44	38	51
TCCCTGTTTCGCTGAT	ref_1402_reverse	83	71	115	98	88	79	67	73	83	76
CCATAAGCAGTTTTTC	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGCCGGGGAACAT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGTGACTGATTGG	ref_1402_reverse	14	12	15	5	10	13	6	12	13	11
AATAAGCACATACGGA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGGTGATAATCA	ref_1402_reverse	29	17	14	22	11	30	19	18	16	19
TGTAGACTTTCATGAC	ref_1402_reverse	104	95	114	84	79	90	75	86	88	109
TCTACATCTGGGCCGG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GACTGGGTTAAGGGCA	ref_1402_reverse	29	20	45	33	21	41	27	26	38	41
TCTATGAGGGTGCTGG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTCTACCGGCAGTACG	ref_1402_reverse	40	36	74	53	28	52	60	58	40	52
AAGCCCATTCACTAGG	ref_1402_reverse	5	5	7	5	5	7	7	2	6	11
ACAGGCTCGACACGTT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
ATTCATTTATTCCGTG	ref_1402_reverse	24	18	22	27	11	25	17	18	12	22
CCCCTTTACAGTCACA	ref_1402_reverse	4	9	11	10	12	8	6	10	11	17
CTGCTACCCCCAACAG	ref_1402_reverse	74	53	64	58	61	64	53	60	53	34
TATCTCGTCCTAAGGC	ref_1402_reverse	19	5	18	15	13	12	7	10	16	9
TGTAAGCGTATAATAT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
ACTCCTACTTAATGGT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CACCGGTTCTCGTCGG	ref_1402_reverse	17	25	17	18	21	17	36	25	37	15
GCGGTCCAGTAAGTTG	ref_1402_reverse	50	44	42	32	30	38	37	41	31	37
CCACTCATACGCTGAA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCCACTCTATATA	ref_1402_reverse	5	3	6	19	8	10	11	7	9	7
CCATTTCCTCATGCAT	ref_1402_reverse	25	26	36	29	33	27	13	27	24	23
GCCGTTGTTCATAGTA	ref_1402_reverse	33	23	36	33	29	24	28	24	38	24
TGATCCTCTTATTTCT	ref_1402_reverse	103	71	107	74	39	76	65	69	54	90
CTCAGCTCACGGTCAT	ref_1402_reverse	15	19	17	23	20	15	12	22	30	11
CGGGGATAGGGTTCAC	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CTAACTAATGGAATGT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGTACCCTACTAA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GGGTATTCTTTCTGTC	ref_1402_reverse	13	7	14	11	19	13	5	8	7	8
TGTGTACTTCAGGTAG	ref_1402_reverse	74	49	78	63	48	69	55	59	46	59
TCACTATCACTATTTG	ref_1402_reverse	114	65	147	93	78	92	78	89	52	90
TCTAGTACAAGCATCA	ref_1402_reverse	50	35	54	58	42	36	41	46	39	44
GTGCGCACGCGGTAGA	ref_1402_reverse	62	45	72	57	48	46	50	58	51	55
CGTGCAGGGTCGGATT	ref_1402_reverse	41	16	33	27	26	35	23	39	33	32
TTGTCTGTGGTGGTTT	ref_1402_reverse	23	18	16	33	34	37	27	18	28	25
TTATTTGCCCGAACCT	ref_1402_reverse	30	20	51	54	31	43	26	21	21	37
ATCGCTACTGAATGTA	ref_1402_reverse	63	35	64	60	59	42	52	47	39	49
GAGGCCGGATTCGTTA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CGTGCTTGAAGGTTGC	ref_1402_reverse	72	65	77	84	53	81	65	67	50	63
CCACAATTCTGCCAGT	ref_1402_reverse	14	22	22	14	10	19	22	24	14	12
TTTTTTCCGTCATCTG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TATCTGAACAGTTTAT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTTATCCCAGGAGGAT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
TTATATCGATTGATCT	ref_1402_reverse	73	45	72	63	59	68	69	75	89	64
GACCTCATGCCTCCCC	ref_1402_reverse	18	12	12	17	9	6	6	14	12	5
CTGCTGGCTCTAGGAT	ref_1402_reverse	17	10	29	26	12	11	12	10	12	16
TCTATCAATTTTGCGG	ref_1402_reverse	15	20	25	25	21	10	14	18	27	23
GAGATGTTCGGCGCGC	ref_1402_reverse	18	15	17	17	10	11	10	22	5	12
AATACTTACCATGGTA	ref_1402_reverse	8	26	6	6	31	7	25	6	25	4
AACGGTCCCTCACAAG	ref_1402_reverse	3	3	4	2	2	1	0	3	4	2
TCGTAACGAAGATTTT	ref_1402_reverse	5	2	7	3	2	5	1	2	2	3
CGTGTACAAAACCAAT	ref_1402_reverse	10	6	12	12	10	8	12	11	15	8
CCTATTACCAACTCTT	ref_1402_reverse	33	28	36	35	23	27	22	28	27	33
GCTCTCTGAGTTAAGC	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GATACGCATTTGACTT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTATTCATCGCAG	ref_1402_reverse	120	98	149	111	110	134	127	127	75	104
ATGTTTGCCGGTCCCT	ref_1402_reverse	2	3	0	3	1	2	0	1	3	6
AAAGGTACCACCAATT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGCGAATACGCTC	ref_1402_reverse	191	124	218	207	137	217	170	163	147	175
GTCAGACCGACGTGTA	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGCTCCCTGTCTA	ref_1402_reverse	10	35	19	7	29	18	29	9	35	10
TCGTTCTCTGGCACTG	ref_1402_reverse	9	6	9	9	4	5	6	9	8	6
CATACATCTCAAATGA	ref_1402_reverse	24	24	45	32	11	27	27	24	33	20
GGTGGTCCATGTGACT	ref_1402_reverse	8	6	7	11	6	9	9	9	4	7
CAGGTAGGGCTATTTT	ref_1402_reverse	25	32	35	28	28	31	29	32	23	20
TCCTGCCTGTTTAGGT	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CACCTGCTGTAAGCTG	ref_1402_reverse	65	39	55	71	45	47	34	47	42	48
AGACTATTGTTTTTTG	ref_1402_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTCTATCTGTGGT	ref_1402_reverse	92	83	103	85	70	92	80	95	72	90
CTCTTTGCGTCTTCTG	ref_1402_reverse	20	28	32	28	14	28	21	29	32	21
AAAAGAAACGGTAATT	alt_1105_reverse	33	24	43	37	41	31	21	28	38	28
CGCTAACGACAGTCTG	alt_1105_reverse	55	78	59	43	67	64	64	46	70	60
CTTGCCCTTTCCTTGC	alt_1105_reverse	24	27	22	23	28	13	25	20	19	13
TAAATTCGTGGGTCTC	alt_1105_reverse	6	13	8	14	7	9	3	7	9	6
TAGAGGCTCCCATTTT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCTTACTCACTTC	alt_1105_reverse	20	6	19	4	8	6	16	8	15	7
AAGCTCTGCTTCAAGT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGGTATTTAGTCA	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTGACACAGTAGG	alt_1105_reverse	5	3	4	2	2	5	6	4	1	4
GTTAATGTGGGGTTAT	alt_1105_reverse	37	45	50	30	47	36	43	34	37	29
GCCTAGCATTGTCCAC	alt_1105_reverse	23	41	26	39	30	19	29	24	55	13
CGTTATCAGTTGCCCC	alt_1105_reverse	9	10	6	7	12	14	10	10	13	3
TAGCTAGTTTGAGGTA	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
AACCTAGTGCGCATGA	alt_1105_reverse	18	38	27	19	25	28	29	19	20	14
TAGATGTTCCCTTCTC	alt_1105_reverse	19	19	20	18	27	20	23	24	24	13
ATGCATAGGCTCTTAG	alt_1105_reverse	3	8	12	11	13	12	21	12	19	6
GTGCATCGATTTGTAC	alt_1105_reverse	10	8	21	11	26	6	19	9	17	15
GGTGTTTTCCCTATAG	alt_1105_reverse	25	28	22	20	29	18	26	30	30	18
ACCGGACTGCTAGTAA	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCCTCTACTCTAA	alt_1105_reverse	34	27	31	16	35	20	30	30	37	22
TCCCGACCTCCTGGAA	alt_1105_reverse	9	29	26	25	36	12	40	28	30	14
GGTATTAGAATATCCA	alt_1105_reverse	10	4	3	10	7	6	4	3	4	3
AAAGGCCTCTGCTACC	alt_1105_reverse	191	281	239	209	245	190	252	164	256	162
TAGTTCCTTAACTCAG	alt_1105_reverse	21	33	31	34	36	24	36	20	39	23
TCAAACGCTACAATTC	alt_1105_reverse	10	20	21	13	26	19	23	14	21	14
AGTCCTCGCACCCAGA	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCAATCTTTACCC	alt_1105_reverse	44	69	65	49	70	53	70	53	79	41
TTGGTACCTCTGCTTT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
GGCCAGGGCTCTCCGG	alt_1105_reverse	18	14	11	13	21	11	8	10	21	12
ATCATTAGCCACCCTT	alt_1105_reverse	1	1	1	3	2	4	1	0	0	1
TCTTTTGTTCACGTCG	alt_1105_reverse	4	2	6	4	8	4	5	6	9	6
TAATGTCGTCTGAGGT	alt_1105_reverse	13	14	18	18	23	19	17	16	23	9
GTAACGGCGACTACAG	alt_1105_reverse	84	114	100	97	99	85	110	84	118	63
TGAAAGATTGCGTATC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
AACCATCTTACGGCCG	alt_1105_reverse	15	10	15	18	19	23	10	18	21	13
AGTCTCTGCTATTAAA	alt_1105_reverse	42	51	57	34	53	41	42	28	38	42
TTCGCGTCATGGTATG	alt_1105_reverse	103	85	98	89	106	74	83	87	96	80
GGTTAGCGGCTCCTGA	alt_1105_reverse	13	21	15	5	12	11	15	15	15	7
CTATGCATACTCATTC	alt_1105_reverse	138	140	182	129	187	118	146	120	150	147
TTCAGACGCCAGCTCG	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTATTCTCTTGAG	alt_1105_reverse	0	0	1	0	1	2	0	1	2	0
TTGGGCCTGGAATGAC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAACTCGAGGGTC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTGCTCCGTATTC	alt_1105_reverse	20	18	30	28	18	26	30	28	28	12
TCGCGCCGCCCAGACA	alt_1105_reverse	30	42	43	23	51	32	40	25	47	22
GTCGCACATTATATGC	alt_1105_reverse	78	106	66	73	119	85	104	81	107	58
GGAACGTCCACACCGA	alt_1105_reverse	40	57	69	58	64	31	68	47	82	39
AGTTGCGGCCCTGGAC	alt_1105_reverse	15	29	26	11	15	13	28	15	37	22
CTGACTAAATACATTG	alt_1105_reverse	25	24	20	24	22	22	24	13	22	15
CCCTTTCTTCGGTCGC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
AAGAATCGTGGGACCC	alt_1105_reverse	53	44	51	36	52	31	32	35	36	40
CTTAGCATCGTACATA	alt_1105_reverse	16	33	26	16	19	15	17	16	21	25
TCGAGTATCTTTGCTG	alt_1105_reverse	7	12	36	25	17	18	29	13	21	13
CACGATTAAGCTTGAT	alt_1105_reverse	37	53	59	58	66	31	53	37	78	38
ACGAAACCGCATTATT	alt_1105_reverse	11	10	15	6	12	10	16	13	18	6
TTGCTTCGGGTATGTC	alt_1105_reverse	28	31	29	29	33	27	36	21	31	14
CCAGGCGCGCTCCTTT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TTAATTGCGATACCGA	alt_1105_reverse	28	32	45	38	29	25	40	30	46	44
TCCCCCTCAACCCGGT	alt_1105_reverse	6	35	6	10	21	8	21	12	30	8
AGTAGCCCAGCTATGC	alt_1105_reverse	20	20	25	9	12	10	17	14	22	9
AATTGCCTTCCGCAAG	alt_1105_reverse	36	64	59	52	45	41	58	51	62	57
CGGTTGTATCTTTGAT	alt_1105_reverse	32	29	44	26	33	22	28	29	34	24
ACTCCTTTATCTCTTG	alt_1105_reverse	59	40	76	39	43	56	62	55	53	48
ACCTAGACTTACTCCG	alt_1105_reverse	17	45	16	13	45	16	38	22	29	25
GGTTCCGAACCATCTC	alt_1105_reverse	43	51	62	45	48	27	41	48	71	21
GTTGCATGTCTTGTCA	alt_1105_reverse	69	62	71	62	102	69	75	56	84	59
AGTCATATTCTGCTTC	alt_1105_reverse	21	30	22	17	28	15	22	18	32	15
ACATAGATTACCGCGA	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TGCATTCGGTATGGAA	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
AATTCTAAGTAATGCG	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCTACAGGAATTT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
CATCTTGTTCCAGAAT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTCCTCTCGGTTC	alt_1105_reverse	21	24	33	35	28	18	31	29	48	21
TTGTTTTATTAACAGT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCGTGCCTATCCC	alt_1105_reverse	9	14	11	9	13	9	11	7	7	3
ATGCCGCGAAGGAACA	alt_1105_reverse	24	30	36	25	30	15	19	24	27	24
CATCATTTAATATTAT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TGATCGTTACCGAGCG	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
GCACCTTACGCTGTCA	alt_1105_reverse	119	143	127	138	123	105	129	101	125	91
TGGCAACAGGCCTGGT	alt_1105_reverse	6	6	7	9	3	3	9	8	8	4
TACGTTTGGACGCAGC	alt_1105_reverse	22	24	34	22	27	30	34	35	35	30
TAATTGGCACCGGCTT	alt_1105_reverse	14	13	14	19	18	13	22	5	13	9
CGCCGGTTGGTGGTGA	alt_1105_reverse	21	47	34	35	37	22	51	38	47	21
AGGTTTTTTAATAACA	alt_1105_reverse	7	5	4	0	4	4	3	6	2	6
TAGTATATCTTCAAGA	alt_1105_reverse	28	18	22	21	8	10	11	13	16	16
GGCGGTGTTCTTTAAT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCTAGCGTTTAAC	alt_1105_reverse	18	20	22	18	18	16	23	17	26	11
CTTTTTTGGCTTGTAG	alt_1105_reverse	1	0	0	0	1	0	2	0	2	0
GGCCGCGACGAAATGG	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTATATGTATAGC	alt_1105_reverse	75	72	96	64	61	68	71	42	78	49
GGTCCTCCCAGTCATT	alt_1105_reverse	3	5	3	2	4	2	4	2	2	3
GGTTTAATGCTGCCAT	alt_1105_reverse	7	14	5	15	22	16	9	9	7	15
ATTGTCAGTGCCTGTT	alt_1105_reverse	23	30	34	23	39	23	31	26	28	23
TGTGCAAGGGTTCACC	alt_1105_reverse	3	3	2	1	3	1	3	0	1	1
GGCTCCGTTGAACTGG	alt_1105_reverse	28	33	28	20	22	17	28	29	34	21
CTCCGGCTGAAGGCAG	alt_1105_reverse	14	11	6	6	9	13	8	10	12	7
GGCAGGCCGTTCTTCG	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTTTGTAGTTTA	alt_1105_reverse	194	220	274	259	201	216	259	216	301	174
TCCTGAGCGAACAACG	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
GGGTATATGCTTACGG	alt_1105_reverse	32	23	40	10	25	17	26	25	28	12
TGGTGGGCATAATATA	alt_1105_reverse	13	6	15	13	16	12	21	9	19	9
GTCACGACCCAATTCG	alt_1105_reverse	17	22	15	11	20	19	34	23	19	22
AAAGCTTCCCATGCGC	alt_1105_reverse	6	15	5	16	5	10	7	6	14	13
TACATCTGCCCATAGC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
GCAGGTGTCCTTTTTT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TTATATTCCCACCATG	alt_1105_reverse	20	27	31	21	23	16	28	11	23	11
ACACATTCTCGGGGCC	alt_1105_reverse	31	37	40	42	29	19	26	32	24	27
TCCATTGATGCCGGCC	alt_1105_reverse	26	39	30	25	30	24	23	24	29	28
TAAGCGTACTGTCACA	alt_1105_reverse	9	15	17	10	13	7	11	24	17	11
CGCGCAATTAGGTTGC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
ATACTCCACCTTAGCG	alt_1105_reverse	31	41	42	29	45	35	53	43	51	27
CGCAGGGTCTTCTAAA	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGGTAGCGCGTTG	alt_1105_reverse	3	11	3	4	10	6	16	2	17	1
TATCCAGACGCCAACG	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
ATGATGCAACTCTAAT	alt_1105_reverse	36	27	37	45	35	40	36	41	22	32
GACGAAGCTTAATTTT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAAATGTCATGTG	alt_1105_reverse	15	15	15	4	18	5	15	4	11	4
CTATCATGAAGTCAAT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTGCTAATACTCC	alt_1105_reverse	24	20	40	33	27	19	26	35	24	26
AGCGGTTTTTATCACC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCGAATTGTGCAA	alt_1105_reverse	5	5	9	3	9	5	18	7	12	4
TGCTCGTGCGGACTAT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGCCTCGATAACG	alt_1105_reverse	237	296	320	242	246	222	296	205	296	225
TGCCCTTTCAAGCAAT	alt_1105_reverse	29	45	41	34	41	25	32	37	39	16
CACCTGGTCCATGTGA	alt_1105_reverse	28	68	45	25	48	28	52	22	72	34
TTAGACTTTCTCCTGC	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
CAACCGAATGGCCTTG	alt_1105_reverse	27	19	30	20	35	18	30	32	36	22
CCATGCAGTCTATAAT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
TATGCCTCAGAGCGGC	alt_1105_reverse	16	8	13	12	9	9	8	6	14	4
ACGCGCGTCCGTTGCT	alt_1105_reverse	7	9	6	6	11	1	4	3	2	3
CTGGTTCCGACCCTTG	alt_1105_reverse	7	19	27	17	13	17	25	18	19	15
TCACGGCACATGCGCA	alt_1105_reverse	20	16	11	12	13	14	11	8	24	14
TGATGTTACTCGGTTG	alt_1105_reverse	3	3	3	8	3	2	3	3	3	4
ATCCTCCGCGTGACGC	alt_1105_reverse	2	4	2	2	7	5	10	1	2	1
GGAGAGCCGGTGTAAT	alt_1105_reverse	42	38	54	34	45	33	42	26	49	28
GCTTATCCGACTTTAT	alt_1105_reverse	13	13	20	18	24	11	14	14	20	22
TGTAACTGTCGTTTCT	alt_1105_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTCTAACGTCATT	alt_1105_reverse	31	28	35	18	25	26	45	23	30	21
CACACTGGGTGCGCAC	alt_1105_reverse	11	27	22	8	17	15	24	4	29	8
CTTTTAAGCGACTGAC	alt_1105_reverse	11	13	16	14	17	17	14	14	15	7
CTGGTTGGTCCCACAT	alt_1105_reverse	32	41	41	28	37	34	47	34	33	38
TGTCGTTGTAGAGGAT	alt_5734_new	0	0	0	0	0	0	0	0	0	0
CACTACTATCCATTTT	alt_5734_new	0	0	4	1	0	0	2	0	0	0
AGCATACCCAGCGGGT	alt_5734_new	39	74	61	50	76	37	73	45	73	38
TAGCGCCGTTACGTAA	ref_5734_new	53	75	57	50	71	52	59	37	81	40
CTCCACCTGTATTCTT	alt_5734_new	8	5	2	3	7	1	2	5	5	5
TCTGCATTGCTTTCGG	alt_5734_new	9	18	5	8	14	8	17	16	17	8
TTTCTTGAATGGGTTA	alt_5734_new	33	36	36	26	41	25	51	28	36	25
TTGATATGGTCAGCGG	alt_5734_new	0	0	0	0	0	0	0	0	0	0
TTAGGAGGGATGGGTT	alt_5734_new	39	53	31	37	43	37	47	33	52	26
TCAATCCCAGGGCTAT	alt_5734_new	3	5	3	2	2	0	0	1	5	1
TACGGGCTTCATCATG	alt_5734_new	0	0	0	0	0	0	0	0	0	0
ATCATGGCCCTGATTT	alt_5734_new	10	6	7	7	7	7	5	8	8	7
GGAGACTTTTTCCTTT	alt_5734_new	16	19	29	25	24	13	14	16	19	5
TACGGCTTATCTTGCT	alt_5734_new	0	0	0	0	0	0	0	0	0	0
TGTATTGCATATTCTT	alt_5734_new	28	34	31	33	39	23	37	19	28	19
TCAGCTCTGTGAATCG	alt_5734_new	0	0	0	0	0	0	0	0	0	0
GCTCTGCTTTGGATAC	alt_5734_new	12	8	7	4	15	2	10	7	9	6
TACAAATCACCGAGGG	alt_5734_new	3	6	4	1	5	2	2	4	3	1
ACGACGTAAGGCTGTC	alt_5734_new	20	21	19	24	24	13	16	21	22	21
GGATTAAATCATACGT	alt_5734_new	0	0	0	0	0	0	0	0	0	0
GTATCCAGATCCGACA	alt_5734_new	8	7	5	8	6	2	11	4	13	2
TTTACGTAACATGATG	alt_5734_new	26	43	24	22	18	24	22	12	25	14
CCTTGCAGTAAAGTTT	alt_5734_new	0	0	0	0	0	0	1	0	0	0
GAGCCCGGGGATTACT	ref_5734_new	56	113	69	62	110	54	77	55	97	56
GGTTCCGTTTGTCCTG	alt_5734_new	79	119	107	83	89	74	133	79	134	66
GCAGGCTTGATATGGG	alt_5734_new	26	25	38	40	33	38	33	33	39	21
TAGGTTGGAGATTTCG	alt_5734_new	15	12	18	12	14	14	22	15	18	14
CTGCTCCGAGGAAGCC	alt_5734_new	97	129	126	118	120	88	130	91	155	90
GTTAGCCTTCCCCGAA	alt_5734_new	8	21	18	14	21	8	24	11	30	9
CGCTCTCCCTGACGTG	alt_5734_new	0	0	0	0	0	0	0	0	0	0
CATATGTTTGTCTTCG	alt_5734_new	47	43	29	35	44	27	38	26	38	27
TAGTCGGGATTAGCTA	alt_5734_new	30	37	30	30	26	16	33	37	44	31
ATAAGTTTGAGGTATC	alt_5734_new	7	8	8	10	13	6	10	4	17	11
GTAACGTGTTGGCTGT	alt_5734_new	0	0	0	0	0	0	0	0	0	0
CTTATGTGCATCTTTT	alt_5734_new	24	16	17	12	18	21	17	9	14	10
GTTTGCCATAACGTTC	alt_5734_new	0	0	0	0	0	0	0	0	0	0
GCCGGTGCGTATACGT	alt_5734_new	26	69	50	36	66	37	78	34	80	25
ACGTGACGCACTAGCC	ref_3829_upstream	3	16	8	5	14	12	13	6	18	12
GCCCAAAATTCTCTAT	ref_3829_upstream	28	47	34	21	44	25	51	24	63	21
TTCGCAAGATCCGGAA	ref_3829_upstream	6	9	10	13	20	9	17	12	26	13
ATTGGGCCTCCCTTAA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTATCATGGTTT	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCAGCCTTCATTTTCC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
GGAACACTGATATGGG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TACCAGCAATCGAGTG	ref_3829_upstream	7	17	7	13	13	5	15	10	25	9
CCACAGTCCCCGACTT	ref_3829_upstream	3	13	5	6	14	1	17	6	12	3
TCCACTTCTTGGCAAG	ref_3829_upstream	23	38	30	19	24	18	23	16	29	16
GCAGCGCACTCGTGGC	ref_3829_upstream	7	21	16	16	22	13	19	13	20	10
TGTGGGTTCCGCTCAA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TGCGATTAGTGTGGCG	ref_3829_upstream	43	78	52	49	83	41	89	37	76	44
TGTGAGAGAAACTCTT	ref_3829_upstream	82	111	81	80	104	54	114	50	105	47
GTCCTTTCGCTAGACA	ref_3829_upstream	0	4	1	1	7	2	5	2	4	0
GCCATTAATGGGATAT	ref_3829_upstream	1	1	2	4	2	2	4	2	4	4
CGCCTTAGCATGCGAT	ref_3829_upstream	7	9	0	5	6	2	5	5	3	0
CTAACCACTTCGACGG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CGGTACTGAATGCGCG	ref_3829_upstream	10	31	19	6	29	8	23	5	28	4
TGCCACGACCAACATA	ref_3829_upstream	8	6	9	5	10	2	15	7	10	5
TGCGGCTAAAGTTTAG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CACTGTTCTGACGCAG	ref_3829_upstream	23	40	20	16	33	21	35	10	28	17
GGCCACTGATTTTAGT	ref_3829_upstream	42	92	50	39	90	36	93	33	93	17
GCCCGCTCGTCGGATG	ref_3829_upstream	41	68	40	37	59	25	58	31	46	32
AACCGCGCATCGGTTC	ref_3829_upstream	21	46	28	32	51	20	45	33	42	38
TGAAGCTGTTGTTCCA	ref_3829_upstream	212	319	281	256	386	219	354	190	389	169
GCCTTTCACATTGCCC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTGTTTACCACC	ref_3829_upstream	80	105	73	60	106	55	96	56	114	57
CGTCGCTGCGGGGTTT	ref_3829_upstream	14	29	10	13	27	9	21	12	36	9
TCCATGGCTTGGGTAG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CTAACAGGCGGCTCAG	ref_3829_upstream	3	12	6	5	23	9	11	11	14	3
GTAGGCTCTTGGACGG	ref_3829_upstream	11	11	10	10	8	6	7	7	17	6
GGTCGAATCGATTCAG	ref_3829_upstream	22	45	29	20	35	22	31	32	47	28
CGCCTCTCTCCCCGTT	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
GCCTATGGAATTGGGA	ref_3829_upstream	2	8	12	5	9	4	11	3	9	4
TTCGGTAATCCGATTC	ref_3829_upstream	18	19	12	14	16	8	19	13	19	16
TTTGCTGGTTTCATGG	ref_3829_upstream	0	7	2	0	4	1	5	0	2	0
ACTGCTTGAATTTTGG	alt_3829_upstream	12	22	15	19	21	19	20	9	19	9
GCTTATCCTTACTGCA	ref_3829_upstream	17	23	21	15	29	21	31	23	39	13
TCTCGAGATGCACTCG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTAACCGTACGCTCTA	ref_3829_upstream	2	6	3	3	14	2	15	1	10	4
GGGGCCTGTACTATCA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
AGTGAGAGAAACTCTT	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CATGATAGGCGTCACG	ref_3829_upstream	12	31	27	25	34	17	31	27	50	21
CGGATAGCAGAGCCTA	ref_3829_upstream	14	21	14	4	25	12	26	6	24	8
TGGTCGGTAAAACCTT	ref_3829_upstream	31	63	37	34	64	28	59	34	70	34
TCGGAGTTTCCGGGTC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCATTCGTTCCCTAAG	ref_3829_upstream	63	79	53	51	85	47	71	45	78	45
GACCCAGGTCCAGTTT	ref_3829_upstream	24	34	29	21	38	18	38	16	29	19
TGTTTCATCTAGAACA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CACGTACCCTGTTTAG	ref_3829_upstream	0	7	4	6	5	1	4	0	13	2
CCCATCGTTCTGCTCT	ref_3829_upstream	6	13	4	6	6	1	7	6	10	5
TCAAGGTCTTGTGGTG	ref_3829_upstream	18	31	22	20	23	14	42	17	29	24
AGTTGCTCAGGAAGTC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCTCTATCAGTGC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTCGATTAATTT	ref_3829_upstream	21	39	32	24	44	25	36	19	43	14
AGGTATAACGTATCGG	ref_3829_upstream	60	66	81	51	89	53	86	48	78	46
CTATCAGTTGTCATCG	ref_3829_upstream	12	30	18	22	24	17	33	11	23	14
TGCCATTTACGAATAC	ref_3829_upstream	11	33	14	9	31	12	45	12	30	9
CGTATTTCAATATGAT	ref_3829_upstream	18	29	22	23	36	14	35	15	32	18
CACTCTGATCTGAACG	ref_3829_upstream	35	71	49	33	65	30	69	39	63	36
TTTCCACATTCGTCTA	ref_3829_upstream	2	5	4	5	7	7	9	6	6	4
GCATTATTAAGAAATC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TGGATGGGACTTAGCC	alt_3829_upstream	69	140	107	85	130	70	136	79	133	70
AACAGGTAGTACTCTG	ref_3829_upstream	15	25	14	20	24	20	37	12	28	10
CCCTTAATTGTTATCG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCCGAGTTGTCCC	ref_3829_upstream	2	6	5	2	6	8	6	3	3	7
CATAGGTATCATGTAG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTACATAGCACAT	ref_3829_upstream	2	5	1	1	2	0	3	1	11	1
AGTCACTTTGGCCGAA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TATTCAAGTTGGGGTG	ref_3829_upstream	11	40	18	20	25	13	47	15	33	14
TGGGCAGCTAGGAATA	ref_3829_upstream	1	5	4	1	4	1	5	1	10	2
GCCCTATTGCCGATCC	ref_3829_upstream	125	185	122	120	171	101	199	99	199	105
GGTGAACTCGCGAACA	ref_3829_upstream	3	2	2	1	2	5	7	8	1	4
GTTAGAGTCTAGCTAA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCAAATTATAGGCCTT	ref_3829_upstream	5	7	2	2	10	7	5	4	7	0
GGCCATAGTACCAAGG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CACCATCACGTCCGTT	ref_3829_upstream	5	8	6	3	17	3	14	5	18	8
CAAAAGTAATCCGATC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TCTAACAGATTTTAAT	ref_3829_upstream	14	35	19	24	47	19	35	26	44	26
CCGCCTGGTCCAATTA	ref_3829_upstream	0	10	1	0	9	1	13	0	4	0
GGTTCGTCCGCACCCC	ref_3829_upstream	24	31	35	30	26	17	35	32	48	27
TGCACTTGAAATTGTG	ref_3829_upstream	8	6	11	5	9	5	15	6	7	4
TAGCCTTATGCATCAG	ref_3829_upstream	12	11	19	12	29	16	14	18	14	15
AACCGGTTAATATTGT	ref_3829_upstream	3	5	4	5	5	3	4	0	2	2
CTTTCTGACATTGGCC	ref_3829_upstream	32	43	39	29	51	47	58	43	58	38
CCAGACTTCCCTTAGT	ref_3829_upstream	15	26	29	29	45	22	51	27	46	17
GCGATGATGTTTCCTA	ref_3829_upstream	30	50	38	25	74	25	46	21	58	30
CTTTTGTATTAACACC	ref_3829_upstream	17	31	24	19	32	13	36	16	23	13
CGGCTTGTTCATAAGA	ref_3829_upstream	5	15	13	7	17	8	8	4	13	3
AAAACTGGGTCCTGAG	ref_3829_upstream	20	32	35	23	28	21	28	18	33	21
TTTCTTAAATGAAACA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TACTTCACGAGCCTAA	ref_3829_upstream	11	12	9	6	9	10	8	3	11	2
TTAGATCGTGTGAAGC	ref_3829_upstream	4	4	2	1	3	2	7	2	9	1
ACACTACCACTTCATG	ref_3829_upstream	4	20	4	6	22	11	42	13	21	10
GATCTGTACATGGCTC	ref_3829_upstream	2	8	3	1	4	2	3	2	4	5
TAGTTTTTTAGCCCGC	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
TAGATTTTGTGTCCTG	ref_3829_upstream	7	11	5	12	9	4	8	5	8	3
TCGGCCAGCAATCAGC	ref_3829_upstream	20	36	28	23	18	18	32	13	27	20
GACAGAGCCTATTTCA	ref_3829_upstream	12	12	14	12	19	7	25	10	19	16
AGCTCCTTCGACCTTA	ref_3829_upstream	6	10	7	5	15	7	11	1	29	7
GAGCCAACGTACGAAG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCGTTTTACATCT	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCACCCAAGGACACTG	ref_3829_upstream	29	39	28	25	41	20	50	21	40	16
AACGTAATCTCAGTTA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATATCAGTTGTATAAG	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CAATGTGATCTGGTCG	ref_3829_upstream	16	15	9	7	27	16	16	11	25	14
GCTCCGTGCATACCGA	ref_3829_upstream	27	27	30	24	37	26	28	18	29	21
ACCCTGATATCGATTG	ref_3829_upstream	5	11	14	12	18	9	25	8	14	3
TTATCAACGGCTCTTT	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGTGGACGGCAGT	ref_3829_upstream	11	22	10	12	10	8	23	8	24	15
CTAAACTCCCCCCGGC	ref_3829_upstream	10	48	14	5	48	6	34	5	43	4
CTGTTTTCGTCATGGC	ref_3829_upstream	37	60	55	49	80	49	62	31	57	41
GGTTAGGGGAGTAAAA	ref_3829_upstream	55	67	44	44	61	65	78	57	79	43
TAGGGACTGCTGCATA	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTTTGTTATTTCT	ref_3829_upstream	0	0	0	0	0	0	0	0	0	0
GCTACCCCAAGTTAGA	alt_6056_new	85	119	86	78	93	66	101	70	98	71
TCTGTATTCACTCCCT	alt_6056_new	17	61	14	16	48	19	50	15	57	15
TACTGATCATGGAACC	alt_6056_new	14	17	19	18	16	11	17	9	8	15
GTGTTTTGAGTTGTCT	alt_6056_new	12	21	10	18	19	9	19	12	20	14
GTGTCGACTAAGACGG	alt_6056_new	27	28	36	38	28	28	34	21	48	22
CGCCCCTCAACCCCCG	alt_6056_new	32	28	36	30	20	36	38	30	28	31
TGGGACTAGCGCGGGC	alt_6056_new	30	27	33	36	23	32	32	25	25	35
CTCTGTTGTTCCATCG	alt_6056_new	102	88	144	93	96	109	91	101	93	80
GAAAGGTCAGGTACAA	alt_6056_new	0	0	0	0	0	0	0	0	0	0
CCTTCTTAGAGGTGTT	alt_6056_new	7	5	9	4	7	6	8	8	7	2
CCGTTTGGCGCCTATC	ref_6056_new	37	25	26	28	25	50	39	42	61	28
ACAATCGGGTGAAGAT	alt_6056_new	47	36	31	38	41	39	35	30	50	25
TCGGACCGCCTTTTGT	alt_6056_new	11	9	6	10	10	9	7	6	6	8
TGCGTAAAATGTTATG	alt_6056_new	10	3	7	9	11	11	4	6	6	15
GGTCTTTCCCGGGCTC	alt_6056_new	31	37	62	62	52	54	40	59	39	45
TCACTATTGTGAGGTG	alt_6056_new	69	85	80	85	56	72	59	75	98	60
AACCCCGCAAGAACGC	alt_6056_new	5	3	5	5	12	3	8	2	5	5
AGTGTATTCCGAAAGC	alt_6056_new	52	39	36	38	41	29	35	26	44	31
TCCCTTGTCTTGCTCA	alt_6056_new	2	19	7	11	18	6	31	7	22	5
GGGATGGCTGCCTTCC	alt_6056_new	16	15	24	17	16	17	18	20	18	24
CACCCAACAAGGTTCC	alt_6056_new	6	11	13	7	5	5	8	8	9	4
TGTTTCATTTACGTGT	alt_6056_new	7	6	2	15	6	8	8	2	3	9
CTTCCCAATGTGCTCT	alt_6056_new	24	36	35	45	31	34	38	25	45	33
TTTTCCTTCTACGTAT	alt_6056_new	0	0	0	0	0	0	0	0	0	0
CCCCTCGCGGAAACTG	alt_6056_new	117	91	142	137	89	127	93	139	95	109
TAAGACACTCGACCTA	alt_6056_new	14	16	28	24	35	35	39	30	28	21
AAGTTGAAATCTCACG	alt_6056_new	59	38	77	49	40	52	61	50	63	33
GTAACAGCGCTCGTCA	alt_6056_new	4	1	7	10	5	2	7	8	7	6
GTCATTCACTTGCCGA	alt_6056_new	102	87	123	114	96	92	81	100	83	105
GGCCCGAGCATTTGTG	alt_6056_new	26	15	8	17	19	15	12	11	10	19
ACGCTACCGCCCGGCC	alt_6056_new	7	8	7	8	10	9	3	10	7	4
AGTCGTAATAGGCGGG	alt_6056_new	0	1	0	3	0	1	2	3	0	1
ACGGGCTAATGGTAGA	alt_6056_new	11	19	36	15	8	15	22	13	14	15
CGCCTTTGATATTGGC	alt_6056_new	7	2	5	2	3	4	9	2	5	5
AGGTTTGTAGATTTGT	alt_6056_new	92	91	122	108	83	96	78	93	111	72
GCGTTTGCTGGTCGGT	alt_6056_new	125	103	129	130	94	122	101	90	100	91
GTTTCTGACAGCCACC	alt_6056_new	4	6	6	9	12	8	7	7	14	7
GAACCTAGAACGTATC	alt_6056_new	24	37	47	44	26	32	29	35	38	38
GTCGATGAGTCGGATC	alt_6056_new	67	54	69	66	39	46	64	34	53	63
CTTTACTACCAGTTTT	alt_6056_new	29	28	28	30	38	16	38	24	29	21
ATGTTAATCGCATATC	alt_6056_new	10	11	15	8	7	12	10	11	2	8
CTGCCCAAGATACGTA	alt_6056_new	52	55	80	76	55	58	66	58	66	65
AGAGGGTGGGTCTGCT	alt_6056_new	33	53	41	32	43	27	62	35	56	43
GATGGACTGACCATAT	alt_6056_new	136	109	132	116	120	136	125	108	83	108
CCTCTCGAAAATATAT	alt_6056_new	28	24	35	33	32	27	35	30	28	33
GGTTGATTTTAACTAA	alt_6056_new	5	21	11	14	12	14	11	8	13	8
TGTGGCAACAAGTAAA	alt_6056_new	28	37	30	30	31	42	23	23	30	38
GCCTGTGAGAGGCGGC	alt_6056_new	16	11	15	10	19	20	8	17	14	8
CTCACGATCTTTCTCA	alt_6056_new	26	24	37	34	20	31	28	34	23	30
GCACAACGCTGCCTTC	alt_6056_new	30	39	42	35	24	39	45	32	32	30
GGGTGACAATGAACAT	alt_6056_new	42	32	35	27	28	40	38	26	22	34
TTATTCCATCTTACAC	alt_6056_new	39	50	52	41	47	39	45	41	43	37
ACGCTCGCAAGTATTT	alt_6056_new	66	61	72	46	65	69	70	57	62	56
TACTTGATCCACTAAC	alt_6056_new	25	32	39	39	18	21	29	28	27	18
CAGGGACTTGTATGTC	alt_6056_new	0	0	0	0	0	0	0	0	0	0
AGTGAGTTTCTTCGAA	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TGATTTCCGGCAACTT	alt_6056_new	79	74	109	92	84	91	94	86	90	78
TGATTTATCTGATTTT	alt_6056_new	0	0	0	0	0	0	0	0	0	0
CAATGTTAACCGATGG	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TATCCATGGTTTTTTC	alt_6056_new	76	69	138	75	50	78	79	70	59	71
TCGGAGTTCCCTTTGT	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TGCGATCCATACTATG	alt_6056_new	14	18	18	19	14	20	22	21	24	10
TTGGTGTTGGTAGTGG	alt_6056_new	0	0	0	0	0	0	0	0	0	0
AGAATAGTTCAGGCGT	alt_6056_new	58	48	71	53	54	59	56	60	56	51
TTATATCCTCGGATCT	alt_6056_new	6	12	10	10	10	8	11	10	9	6
GCCCCATAGGCACGCG	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TCGTCCGCTTCGGTTA	alt_6056_new	9	12	9	8	10	11	7	9	6	4
CACATCTGTTTTCACG	alt_6056_new	43	65	70	50	53	52	71	46	72	44
AGGCAATGACATCAAT	alt_6056_new	15	11	17	12	14	11	4	6	10	14
TTTCTTGAGTGTTCCC	alt_6056_new	51	43	51	45	33	48	44	44	44	56
CCTAACTTCCTAGTCA	alt_6056_new	0	0	0	0	0	0	0	0	0	0
CATGCGTGTAGTTTTT	alt_6056_new	22	10	24	18	18	15	25	11	17	26
AGCGGGCTCGCGTATG	alt_6056_new	67	88	121	87	86	86	84	62	79	56
GCCAGTCAAAAGCCAT	alt_6056_new	2	4	4	1	5	4	11	6	9	6
TATATGCCTAGCCCAT	alt_6056_new	50	44	53	52	41	54	60	36	63	52
ATCCCGCGCTGTAATG	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TAAGATTTATCCCCTC	alt_6056_new	14	19	22	15	16	13	12	10	7	19
TTAGGCCCCCTGTCTC	ref_6056_new	37	29	61	27	22	27	33	40	29	43
GCACGGGACGACTTGT	alt_6056_new	19	29	26	16	23	10	23	20	20	13
ACCAGCCTCTTTGAAG	alt_6056_new	19	53	23	21	51	28	49	15	43	20
CATTATATCCACATTT	alt_6056_new	13	8	18	12	15	16	10	11	12	12
GGGAGCCTGCTATCAC	alt_6056_new	18	13	31	22	17	29	15	17	18	21
AGATCAGCATTTGTAT	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TGCATGTCGTAAGGGT	alt_6056_new	12	9	15	10	8	4	6	6	7	7
GCAGGATATCTTTACT	alt_6056_new	56	51	80	73	48	73	55	56	89	58
CACCGGAAGTCCGGCA	alt_6056_new	0	0	0	0	0	0	0	0	0	0
CCATCACTTAATTCCC	alt_6056_new	0	0	0	0	0	0	0	0	1	0
GTCTAACGTTGTGTTC	alt_6056_new	0	0	0	0	0	0	0	0	0	0
CGCAACTGGTGTAGGT	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TTGTTCGCCATTAAAT	alt_6056_new	43	39	37	41	24	32	39	26	32	27
GCTAAGTGCTTAGCTG	alt_6056_new	8	6	5	13	8	6	3	8	7	2
AGTCCTACGGACTTCG	alt_6056_new	34	26	30	54	31	30	34	34	35	39
TTCGTACTCCCTTGAC	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TCTTGTGTTATTTCTT	alt_6056_new	28	20	36	35	21	28	25	40	38	37
CTACCAATTAAGTGTT	alt_6056_new	48	80	64	45	80	46	76	57	52	49
TTACTGGATCACTCTG	alt_6056_new	14	16	31	19	20	17	13	18	16	17
GTGGATGTTACGCAGT	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TGGCTTCCAATCCGTC	alt_6056_new	14	6	9	10	3	8	16	7	7	13
ACCTGCAAGATACTCC	alt_6056_new	5	10	8	5	6	8	13	6	6	7
AAGTTTCCGCACCGAC	alt_6056_new	15	6	11	26	13	19	19	20	23	18
TGCCCTATGTATGTGG	alt_6056_new	5	3	0	1	2	4	0	6	3	2
GCCCGACTGTATGACG	alt_6056_new	70	81	97	94	96	91	68	76	86	77
ACTTGTCCTCAGCGTT	alt_6056_new	24	14	21	22	25	30	15	18	29	19
CATGAGATTCCTGTTC	alt_6056_new	7	13	23	23	19	15	15	29	11	13
AGCGTGTATGCTAACT	alt_6056_new	83	60	94	54	63	63	77	51	69	79
ATTAGTAAGTTGTGTT	alt_6056_new	5	7	14	7	13	12	7	6	8	5
CTTCAACGGCTGATCA	alt_6056_new	73	54	91	76	55	87	65	91	72	86
CACGCATGACGTTGGG	alt_6056_new	17	11	11	9	5	6	5	13	8	5
TTGTCCGTTGACTCTG	alt_6056_new	47	43	48	53	30	43	45	31	30	44
TGTATGATAAGAATTT	alt_6056_new	57	60	102	75	77	80	71	73	62	79
GCCGAACGCGGGTCTG	ref_6056_new	89	72	96	85	63	80	69	74	100	74
TCTTCGCCGGTGCATC	alt_6056_new	13	21	26	12	23	27	16	14	33	17
CCGATTCCGGCAATAA	alt_6056_new	0	0	0	0	0	0	0	0	0	0
GGCTAAACCAGTTAGT	alt_6056_new	0	0	0	0	0	0	0	0	0	0
GTGGTCTCTCGCAAGA	alt_6056_new	50	41	58	83	49	66	54	52	45	36
CAAAAAACTTGATTTA	alt_6056_new	11	2	2	3	3	2	2	3	2	3
TCTATGACCGAATCAT	alt_6056_new	5	3	4	4	3	3	5	1	5	3
CCCCTTCGGGTAACTT	alt_6056_new	14	12	17	15	11	20	16	14	14	7
CCAAAGTATTTGTTGA	alt_6056_new	12	32	18	8	48	17	38	16	64	17
CGGTGAGTACCGTCCA	alt_6056_new	105	104	131	115	101	84	93	115	94	95
CAATACAATCGCCGCA	alt_6056_new	10	15	16	9	9	12	16	16	15	18
AGAAACTATGTCTTGA	alt_6056_new	0	0	0	0	0	0	0	0	0	0
TATTTAACTTTCGTCG	alt_6056_new	19	12	20	21	16	18	18	12	18	12
CGTGGGCCGCGTAGGT	ref_940_upstream	21	14	8	14	16	16	16	15	16	7
ATTCATAGTAAACATA	ref_940_upstream	6	4	3	4	6	9	7	6	13	7
GTTCTAGAACAGTTGA	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGGAGGTGCTTAG	ref_940_upstream	3	16	12	12	13	8	17	5	12	8
GATGACTTCTCCAAAA	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
GCATGCCCGGGCACTG	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTCAGAACGCTGC	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGTAGAAGTATTC	ref_940_upstream	24	39	34	19	35	21	44	22	34	16
CAGTCGGCACCGTTGG	ref_940_upstream	83	90	84	73	101	68	125	63	96	67
TTTGCACCCCCACTCG	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTGTCTATATTGT	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
TTATTTCATTCGCGCT	ref_940_upstream	11	13	15	14	11	6	17	6	17	9
GAGACTACAGCAGGCT	ref_940_upstream	14	14	23	10	22	12	14	20	21	14
TCAGTTCTCTAAATTT	ref_940_upstream	10	14	15	7	9	11	23	9	20	9
GATCCTGTCCATGCAA	ref_940_upstream	37	52	36	26	47	35	30	31	45	35
CGCGAGAGAAAGTAAT	ref_940_upstream	136	165	216	152	199	139	167	159	208	136
CCTTCGTCCCCCTCAT	ref_940_upstream	50	78	42	49	73	52	66	52	79	38
CAACCCCTTAATCTGG	ref_940_upstream	7	4	4	9	16	6	9	9	17	5
CCCTAAGGAAGTTACC	ref_940_upstream	72	83	63	70	64	63	104	62	103	62
GCTTTTTTACAACACA	ref_940_upstream	8	16	6	13	17	8	23	12	20	12
TGCCGGGAGTATCCAA	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
TACCTCAATCTTTCTA	ref_940_upstream	30	40	37	26	31	18	41	23	35	16
TTCAAACTTTATTCCG	ref_940_upstream	107	175	139	94	183	105	181	100	148	93
TATATAGTACTCTTGG	ref_940_upstream	124	164	143	122	167	98	178	112	169	129
AGTTTCGGCGTCGTCA	ref_940_upstream	6	11	4	8	4	3	10	7	12	4
GCAAAGTATTTCGTTA	ref_940_upstream	41	61	53	34	47	41	64	24	63	47
ACATTGTATATGTTTC	ref_940_upstream	50	60	74	45	67	50	74	49	87	51
CTAAGTAATATCCTAT	ref_940_upstream	43	36	57	53	66	46	40	45	42	26
CGTTTACAGTAGTCTT	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGGGGATCTATTG	ref_940_upstream	44	50	51	45	58	44	67	37	61	49
ACTGGAGGGTTATGGG	ref_940_upstream	1	3	1	2	3	3	3	2	3	2
GGTACGAGTATTCCGT	ref_940_upstream	56	62	46	64	73	51	62	57	71	42
TCGCGTGAGTGGAGAG	ref_940_upstream	13	18	21	21	21	12	10	13	21	6
CGTGCAAGCATTGTCC	ref_940_upstream	16	27	26	16	34	22	24	11	30	11
CCTTTTACCTAGTACC	ref_940_upstream	3	14	1	12	7	7	6	5	11	7
GCCCCTATACGTTATC	ref_940_upstream	23	32	20	31	27	26	34	21	28	21
TATCCTCACCATGGGT	ref_940_upstream	31	35	32	43	32	32	39	25	38	26
CCTTTTAAAATTTGCT	ref_940_upstream	109	189	159	112	183	120	228	127	229	114
TAGGCACCCCGTTCTT	ref_940_upstream	0	0	1	2	0	3	2	0	0	0
TGTCCAGTTCTCCTCG	ref_940_upstream	30	33	19	17	56	25	42	24	50	18
CGGGTAAGCACCGAAG	ref_940_upstream	27	43	44	23	32	34	39	17	43	22
ATGCCTCCCGCATAAG	ref_940_upstream	40	45	34	28	64	22	52	31	69	32
TTTTCCTAATCGTTCG	ref_940_upstream	74	69	73	64	101	71	84	69	77	67
TGCCGGGGGATCGACA	ref_940_upstream	31	39	37	31	37	25	51	29	32	26
GTGCCCGTGAAAATAT	ref_940_upstream	36	64	53	31	58	54	50	40	52	33
AACGAAAGCTCCGACC	ref_940_upstream	98	153	152	143	147	109	164	134	160	109
TTACCGCAATGCAAAC	ref_940_upstream	130	193	194	155	208	124	217	127	246	114
GTGAGCAGCATCGTTT	ref_940_upstream	29	27	28	35	32	30	38	34	54	22
TCCTGTGATCGCAGAA	ref_940_upstream	58	75	72	55	70	59	71	54	103	60
TGTATGCATTCTAACT	ref_940_upstream	18	23	22	14	10	17	16	9	12	9
TTACCAAAATTCTCTT	ref_940_upstream	224	226	221	207	253	163	254	184	284	206
GATGTTAAAGCTCAGG	ref_940_upstream	14	12	16	33	32	18	28	16	31	15
GGCTATCACATTGCTT	ref_940_upstream	17	44	38	32	42	29	42	17	49	30
CGTATAGGTGTCTCCT	ref_940_upstream	11	12	9	12	11	7	15	8	12	5
TTAGGGTTCGAGGTGT	ref_940_upstream	37	70	28	31	55	43	79	26	65	31
TACTTGGCAATAGAGT	ref_940_upstream	29	46	39	32	48	28	36	44	47	21
TACCGACGTGGGTTGT	ref_940_upstream	19	58	41	18	44	25	71	30	64	24
CCGCGGAGACATTTAC	ref_940_upstream	10	8	10	6	12	11	9	6	12	5
GATCTAATGTTCATTA	ref_940_upstream	19	26	33	24	30	22	35	18	40	31
CTAGAATAGCAACATC	ref_940_upstream	27	47	31	18	30	23	42	28	44	18
GTTGAGATTATTCCGT	ref_940_upstream	8	20	14	15	17	8	20	5	21	12
CTTGACAGGCGTACTA	ref_940_upstream	5	8	8	9	7	8	2	1	5	4
ATACCTGTCTCGGAGG	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTTCCGGGTGCCG	ref_940_upstream	16	25	27	24	25	23	31	18	43	22
AATAGCATTGCACGCG	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
TACCGCAATGCAAACG	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
CTCCATTATCTAAGAA	ref_940_upstream	9	18	22	22	16	14	19	27	26	12
CAGGGCTTGAAGAGTT	ref_940_upstream	31	48	58	49	49	33	66	49	63	24
GTACCGTCGCTTGTGC	ref_940_upstream	8	22	4	5	24	5	20	6	27	7
CACATGGCTGCACGTA	ref_940_upstream	68	55	81	58	64	63	51	44	69	54
CCGGTCAACCGTCGGC	ref_940_upstream	2	8	2	1	17	1	10	3	11	0
TTATAGATACAACCGC	ref_940_upstream	202	268	245	211	277	194	284	211	301	168
CACATTTGACGTGGAC	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGAAGGAGCACCG	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTTTTGATTAGAC	ref_940_upstream	4	11	10	6	17	5	8	4	14	4
TGGACGGTTTTTCCTA	ref_940_upstream	43	64	63	37	53	47	75	29	62	34
CCGTTCATATGTCCCA	ref_940_upstream	34	55	33	26	46	32	40	22	55	26
CCTCCTAAATGTATTC	ref_940_upstream	36	120	63	51	107	42	103	50	112	70
AATGGAAGTTACCAGT	ref_940_upstream	41	45	50	40	43	54	47	36	58	24
TTCGTCAATCATTTTG	ref_940_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTTCAAACTTAAT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CGTAGGTTGTATTTGT	alt_5765_new	26	37	37	69	51	36	52	34	56	44
TTTCCTGGCCCGGCTA	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GGAGAGTTATAAGTGA	alt_5765_new	23	41	33	31	35	25	35	21	33	22
TGGTTATACTCTATGA	alt_5765_new	18	15	26	9	34	19	20	16	23	16
GAGTGTTACTATTTTC	alt_5765_new	59	94	80	60	82	52	96	65	94	42
TTTAAATCTCTTCTAC	alt_5765_new	89	103	110	72	112	95	97	88	109	54
CTGAAATACAGCAGTA	alt_5765_new	270	410	291	283	362	274	377	248	427	265
ATTGGCGGGATCATTC	alt_5765_new	29	44	44	28	37	31	48	26	48	18
TCGCCGACACGCCTGA	alt_5765_new	57	67	50	48	61	36	66	46	70	43
GAGTTTCCGCCAACGG	alt_5765_new	6	10	13	8	8	15	8	4	12	5
CTACCCCTACTGAAAA	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GTTTTGTCCTATGCGT	alt_5765_new	28	56	37	29	49	53	64	25	54	38
ATACTTTATTGGCAGC	alt_5765_new	56	84	74	50	74	52	72	45	66	48
CCCCAACTTGTCTCTT	alt_5765_new	26	43	37	23	31	27	63	37	53	39
GAAAATACTCGCACAC	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GAAAGCTCAGGAGTCC	alt_5765_new	14	21	27	12	21	16	20	14	9	4
TCTCGTTGTTGTCTAG	alt_5765_new	72	82	84	75	86	65	120	55	124	48
TTGCCAGTTAATCCTC	alt_5765_new	22	28	42	30	27	24	25	26	32	19
TTTCCTGGACCGGCTA	alt_5765_new	474	603	636	489	576	488	609	446	657	426
AGTATAATCTGTATGT	alt_5765_new	170	209	232	158	225	151	200	144	248	136
TGCCACGACCCCACTC	alt_5765_new	24	52	31	16	60	24	57	25	43	18
TTACCTGGACCGGCTA	alt_5765_new	0	0	0	0	0	0	0	0	0	0
TCACGTCAGATGCGGG	alt_5765_new	160	228	211	181	152	178	185	143	227	157
ATTTTATCTGTCCGTC	alt_5765_new	29	56	49	41	47	36	45	47	42	50
GAGTATTTCGAAAGGG	alt_5765_new	0	0	0	0	0	0	0	0	0	0
ACTAAATTATTTATAA	alt_5765_new	74	110	101	97	89	80	106	77	122	73
CTCCGATACCCCCGTA	alt_5765_new	21	52	49	42	45	36	65	32	71	34
ATACACATTTATGTAT	alt_5765_new	8	5	13	8	2	8	15	11	10	14
AGACTGCCGGAATGGG	alt_5765_new	51	65	65	48	32	46	59	62	74	45
GTGTCGCTGCCTTGGG	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CAGCGATCCCAACTGT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GTGGTCTCCTCGTCGT	alt_5765_new	82	250	84	68	301	52	214	65	279	59
AGAACACTTTTTGTTT	alt_5765_new	23	5	13	12	19	10	20	9	7	9
ATTTGGGCTTGGGGCT	alt_5765_new	249	303	313	238	275	223	330	238	337	222
CCAGTTTTTGTATGTG	alt_5765_new	19	27	39	31	62	33	33	24	46	24
CATCTTGCACCCCGGA	alt_5765_new	15	18	16	23	25	16	18	9	22	16
CCGACTTTGTGACGCA	alt_5765_new	40	75	41	35	73	15	93	37	104	26
TTTGGCTCTACGCTAC	alt_5765_new	16	32	24	16	19	10	15	15	29	12
GGGGTTTTCTTACTCT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
TCTGGCAGTATTTCTT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CATGGTGGACATCACA	alt_5765_new	0	0	0	0	0	0	0	0	0	0
ACTTGTTCATGCAGCT	alt_5765_new	5	15	19	16	13	17	14	11	16	10
GCTCAAGAGCTTAGCC	alt_5765_new	18	22	18	12	25	18	15	21	22	11
ATCCTTAGATGGGGGG	alt_5765_new	69	69	85	72	89	76	69	59	85	61
CTTGTGACTATACGTG	alt_5765_new	58	72	65	50	92	53	74	48	91	42
ATGAGGCAACTGCTTC	alt_5765_new	39	39	36	29	28	28	34	31	49	28
TTATTGAATATGAAGT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
ACGTCTTATTAGACCT	alt_5765_new	3	2	1	5	2	1	5	0	3	2
TACACAGTATATGTTA	alt_5765_new	42	47	52	32	56	40	53	34	43	28
CAAGGCTTTTTCTTAT	alt_5765_new	59	85	89	76	90	60	89	73	65	59
AGCCACTTTGATTTAC	alt_5765_new	0	0	0	0	0	0	0	0	0	0
ATTCTTCATCTATCAG	alt_5765_new	0	0	0	0	0	0	0	0	0	0
TTCTTGGTTTAAGGAC	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GCAAGCACGATCTCTA	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GTGATGTGTGAGAATC	alt_5765_new	7	15	12	5	13	7	10	9	9	14
CTCTGACGAGCCACGG	alt_5765_new	29	67	47	26	57	32	62	31	68	39
GGCGAGATCCGCTCAT	alt_5765_new	37	21	42	29	31	19	26	28	24	35
CATCATGGGATATGAA	alt_5765_new	37	29	30	21	20	28	31	22	41	19
TATCTTGTCTGAGCCC	alt_5765_new	12	17	11	9	20	15	9	9	15	10
GACCACTGGGTAGCTT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CAGGGTGAATCCATAC	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GGAAGCTAGACGACAG	alt_5765_new	4	11	10	12	4	7	9	9	5	9
TTATCTCGAAAGCATG	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GCCGGGGGCGGCAAAT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CCTTCGCATCTACTTG	alt_5765_new	35	63	60	46	62	39	60	43	70	29
ACTTGTGGCCGTTCAG	alt_5765_new	31	47	59	32	64	31	55	39	54	40
TATATTTAGTTCATCA	alt_5765_new	0	0	0	0	0	0	0	0	0	0
TCCTCAGTGCCCCGCG	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CACATCCGAGCTTATG	alt_5765_new	0	1	0	0	0	0	0	0	0	0
ATTACTTCAGCCTAGA	alt_5765_new	9	19	8	3	10	7	11	3	16	6
GACATTTGTGTATTCC	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CGCGTGCGGTCTAGGA	alt_5765_new	23	23	19	39	35	16	24	21	26	21
CCGCATAACACTTTGC	alt_5765_new	0	0	0	0	0	0	0	0	0	0
GCCTCTTGCCCTACCT	alt_5765_new	22	48	34	30	40	28	48	33	62	25
ATGTCCTTTCTTACTT	alt_5765_new	36	35	35	30	49	35	46	40	46	40
CCCGTGGTTATATGTT	alt_5765_new	11	10	12	9	9	5	9	4	7	3
ATAAACCGCGATGAGT	alt_5765_new	24	32	22	40	21	22	36	15	35	29
CTTGTACCCCTTTTAA	alt_5765_new	0	0	0	0	0	0	0	0	0	0
CTGCTAGTAAGTACAC	alt_5765_new	44	65	50	47	63	43	72	43	71	45
TCCATGAACGTAGTGT	alt_5765_new	0	0	0	0	0	0	0	0	0	0
TAAGCAACAATTTTAA	alt_5765_new	36	79	87	68	70	44	86	52	74	60
TCCTTCCCCGGTGTTC	alt_2515_reverse	6	25	13	17	27	18	24	6	24	14
GAGGGTCGCTTTAGCC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATCGGTAGGGCG	alt_2515_reverse	8	6	14	10	22	13	7	4	13	12
AGACGCGACGTTCGTA	alt_2515_reverse	28	37	55	32	49	46	50	33	47	27
ATCGGGAATGGGTGTA	alt_2515_reverse	17	18	36	30	26	32	16	27	27	21
TCTTCTTTAGAAAGTC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CAGCCTATCATCTTGT	alt_2515_reverse	2	9	7	3	6	0	4	2	3	2
TATGGTTTCGCCCAGG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GTTGATTTGCATGCGG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTATCATTGCGTC	alt_2515_reverse	18	29	23	20	17	28	33	12	30	15
CGGATTGGTTCCAGCT	alt_2515_reverse	24	35	31	29	32	30	43	14	27	30
TTCTTTCCTAATTCGG	alt_2515_reverse	80	85	78	80	76	79	84	81	71	71
GGCAAGTGGACTCCTC	alt_2515_reverse	13	13	17	22	23	15	19	13	15	20
GTGGGAGGCATAGCTT	alt_2515_reverse	20	20	29	16	17	12	12	11	18	16
CTACGGTCAGTTTCTG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTTACACTACCGGCAG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CGTACGGGGCGCGGGA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTACGTCCATCTTGCT	alt_2515_reverse	27	37	26	47	39	18	55	33	34	21
GTGCCACCACCGGATG	alt_2515_reverse	5	7	3	14	4	2	11	4	3	5
AAGTTAGACCGCCACG	alt_2515_reverse	69	64	87	51	56	54	75	49	59	57
GGGGCGAAGCAAATCT	alt_2515_reverse	37	26	26	27	45	28	36	36	35	24
ACGGATGCGATTTTGT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTACCTGTTCATG	alt_2515_reverse	25	24	15	13	21	18	19	17	27	18
GCATATGGCGAATTTC	alt_2515_reverse	133	148	138	137	136	141	130	116	158	129
GGGTCTTTGCTTCATA	alt_2515_reverse	128	146	155	168	152	114	132	135	142	103
GACGTCTCTTCTACTC	alt_2515_reverse	11	9	21	17	21	17	17	16	12	24
ACCCTCCGCCTTCTTT	alt_2515_reverse	25	33	30	23	26	25	39	21	17	42
ACATTTTGCAGTCATC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TATTATTTGGGGCACG	alt_2515_reverse	64	74	79	74	77	60	74	82	93	61
ATCTCAACCATGCGGT	alt_2515_reverse	37	53	56	62	42	55	53	59	40	33
GTTACCTAATGCCGTC	alt_2515_reverse	52	51	62	94	76	74	93	75	58	60
CGGTTTTAATATTTCT	alt_2515_reverse	201	166	238	198	190	193	177	188	215	141
TCCTTCATGATTTGGT	alt_2515_reverse	40	52	43	42	62	40	46	32	63	31
GGGGCTCTATCTCGGA	alt_2515_reverse	53	50	60	55	65	67	45	48	50	43
ATCGCCATGTGGGTCT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGATTTTCCACTTCTT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CAATTTGTCTCTTATC	alt_2515_reverse	64	64	69	53	81	58	69	46	61	60
CGCTTAGGACTTTCTA	alt_2515_reverse	14	14	23	5	16	10	6	18	19	20
TTACCGCACGTGGTTA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGTCAGAGTGCGCAGC	alt_2515_reverse	18	16	23	24	22	32	26	13	27	21
TGGTACACGACCCCTC	alt_2515_reverse	27	60	29	30	76	21	69	26	68	28
CCTTTTGTATAAACTA	alt_2515_reverse	44	74	51	63	67	43	60	51	71	52
AAAGTCTCGCTCTTAT	alt_2515_reverse	16	18	28	18	25	20	24	18	26	24
GTGTTTCTTTAATAAC	alt_2515_reverse	11	13	13	9	7	23	10	10	15	7
GTAATTGTTATCGATT	alt_2515_reverse	28	32	27	22	25	33	28	24	38	31
GCCCATTCCGTCCAGG	alt_2515_reverse	1	0	0	0	1	2	1	2	1	2
ATAGGTCGAGTTTATT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCGTCTTGCGCTT	alt_2515_reverse	12	11	15	10	16	13	14	10	20	4
ATGTTCCAGTCTGTTT	alt_2515_reverse	12	16	13	6	17	17	15	12	34	12
ATTATATCAGGTTGTC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGGCCCGAAGTGA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGGACAACGCGCTACA	alt_2515_reverse	41	29	53	35	36	24	17	42	41	25
AGTCTTGTGGAGTGGG	alt_2515_reverse	7	8	4	8	4	8	1	6	3	7
TTGATCCGCCAGGTGC	alt_2515_reverse	40	23	34	24	32	26	30	28	33	25
GTTCAGGACTTGCGTG	alt_2515_reverse	16	17	16	24	26	23	28	23	24	20
CAGGCCTGATCCTGTA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CAGGGGGTTGTCTTAA	alt_2515_reverse	5	5	5	7	2	4	5	2	7	2
TATCACTACAGACATG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGCAATCAATATGTAG	alt_2515_reverse	20	28	36	29	25	21	32	30	33	20
GTTCTCCCTACACGTG	alt_2515_reverse	6	16	5	7	16	7	15	5	11	16
TTCTGCAAACCCGTCA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
AACGACTATTGCACCG	alt_2515_reverse	19	16	28	20	20	20	23	12	22	18
ATGCCCCTCGGTCTGT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TATCAGTCGTCACCTG	alt_2515_reverse	15	16	35	20	26	10	25	26	26	18
TGGACCCGTGCATCCG	alt_2515_reverse	533	491	696	563	527	532	521	502	553	499
CTTCTCCTCCTTAAAC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GACCGCGTTTTGGTGC	alt_2515_reverse	18	23	9	13	13	20	18	15	17	11
CGTGTCGGTTATTCTC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
AATTTGCATGTAAGAG	alt_2515_reverse	73	86	100	83	99	87	108	64	87	57
TTGGCTTCCGCAACCA	alt_2515_reverse	4	6	4	6	5	7	4	4	6	8
TTGTTGACGACGTGCG	alt_2515_reverse	127	154	137	147	140	133	142	121	129	98
CTCAGAAAGCTATCCA	alt_2515_reverse	53	40	49	41	57	39	46	24	39	35
GACGGCCTTACTCGAT	alt_2515_reverse	57	48	68	68	73	58	58	68	83	60
TCAAGAGGTGATGGCG	alt_2515_reverse	28	38	54	28	38	46	28	35	45	37
CTTTCTGCTTTATTAC	alt_2515_reverse	49	64	43	51	62	36	56	43	64	40
TTCTCTCGTAAGATAA	alt_2515_reverse	37	31	29	24	35	19	31	33	39	30
CGGCGTGAGGGGTCGA	alt_2515_reverse	62	56	78	68	48	48	68	82	69	60
TGTCTCCCCTTGATAA	alt_2515_reverse	11	32	9	15	38	4	42	7	45	8
ACCTATCATGTACGGG	alt_2515_reverse	33	36	43	44	34	22	40	31	49	37
AAAGTGGCCCGTCTCG	alt_2515_reverse	15	14	17	9	11	6	10	19	11	13
GTTTCAGTAAAAAGGC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGATGATCTGTAT	alt_2515_reverse	5	6	7	13	10	8	7	9	10	7
TAGAGCACTGTACCTG	alt_2515_reverse	27	22	28	30	24	27	34	36	24	15
CACCCACCTAGACCAT	alt_2515_reverse	6	9	5	8	5	8	16	10	9	6
GTCAACTGTCAAAGGA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GTCTAAATATGTTCCA	alt_2515_reverse	106	94	141	129	103	104	111	101	109	82
ACTCTTGTGGGACGAG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGGCATAAAGAACACC	alt_2515_reverse	15	19	30	28	31	28	28	20	16	24
CTAGTCGGTTTCTCAG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGCATTTTTGCTAATT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGTGGTCATTCG	alt_2515_reverse	60	61	80	51	60	62	64	61	63	38
TATTGTCGAGTGCATG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTTAATGTTTTTC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TACCGTTTGCTGGTTC	alt_2515_reverse	8	5	4	9	4	9	5	6	5	2
GTATATTCCGGGTGTG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
AACGACTCGAGAAGAA	alt_2515_reverse	9	8	18	17	14	13	7	14	7	20
GAAGAAGTAGGTCAGC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TTGCAAAACTGGATTT	alt_2515_reverse	11	21	20	16	11	11	21	18	21	14
AGATTATGCCCTTCTC	alt_2515_reverse	29	34	50	40	24	28	30	32	37	29
GTATAGGCTAAACAGT	alt_2515_reverse	61	53	44	58	68	45	77	56	95	50
AGGTTTCTAGCTTTGA	alt_2515_reverse	3	1	5	3	0	2	3	0	2	3
GCTGTCGTACGTGGTG	alt_2515_reverse	29	23	19	25	28	29	35	21	28	20
ACTGTTAGTCGTTAGC	alt_2515_reverse	49	49	57	57	37	45	59	40	46	41
TTCAACGCTGTCCTTT	alt_2515_reverse	26	21	41	23	46	32	36	27	34	32
ACTACTGGGTGAAGGG	alt_2515_reverse	16	20	13	19	8	9	12	14	14	13
TAAAATTGGCCAGAGC	alt_2515_reverse	96	88	124	107	92	86	108	76	103	81
CTTCTCCCCCGCTAGA	alt_2515_reverse	55	46	62	47	56	50	62	53	62	47
CACTGTATTCCCTCTG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCTTTCAAATATG	alt_2515_reverse	14	19	15	4	12	3	11	6	7	7
ACGAGCGAAAGTTTTT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CGGATTCTACGCGCAT	alt_2515_reverse	8	11	7	9	5	6	4	6	20	5
CTTTTTACGCCTAGAG	alt_2515_reverse	3	3	5	4	2	4	3	5	2	6
AGCTGTTCTTAAATCA	alt_2515_reverse	53	56	55	59	47	37	45	49	62	41
GATCAGCCGACGGTAG	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GCTATCACGTTCCCTC	alt_2515_reverse	18	11	13	19	10	8	29	16	23	11
ATCACAGTGTTGTAAT	alt_2515_reverse	0	1	1	0	1	0	0	0	0	0
ATTGCTCATGAGTTTT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CATTTTAACTCGTGTC	alt_2515_reverse	71	83	96	70	87	78	80	64	79	77
ATACATGGCCGGCTTC	alt_2515_reverse	9	3	1	9	2	8	2	12	1	6
GCCCCCACAGATTTTT	alt_2515_reverse	23	18	32	25	28	14	24	23	18	33
GGTTCTTGTGGGGTAA	alt_2515_reverse	85	93	120	86	110	95	110	110	102	96
ACACGTTGTGTCCCAC	alt_2515_reverse	68	57	83	74	54	46	46	57	57	50
TGGTGAGCCAAATTGA	alt_2515_reverse	47	39	56	50	59	36	40	45	56	48
GAAATATTGGCCGGCT	alt_2515_reverse	6	7	12	8	9	13	11	7	9	5
CACTGACGTAGGCTAA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCATACTCCCTGC	alt_2515_reverse	35	42	40	31	58	26	64	22	60	23
GCTTCCCGCTAACTAT	alt_2515_reverse	8	16	9	9	12	7	10	10	16	7
TAGCGCTTAAGTACAT	alt_2515_reverse	9	10	14	13	14	5	14	9	11	11
GTAGGGTTAGCACCAT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GATAAATCGCTCATTC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGGATTTGCCCGCGGA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGATCTTGGTCTAAAG	alt_2515_reverse	143	159	167	148	163	146	148	157	182	158
GCGGGTTCGCTACGAT	alt_2515_reverse	19	24	32	26	21	27	27	31	22	22
TCTCCTAGTACATCTG	alt_2515_reverse	22	23	24	17	20	20	23	23	15	13
CTAATACCTGGCTATT	alt_2515_reverse	54	61	82	50	68	68	75	62	62	40
TTGCCGTCGGTTAGAA	alt_2515_reverse	1	9	6	13	7	8	4	3	4	3
CGCCCATCAAATTTAT	alt_2515_reverse	76	63	76	84	57	77	83	51	78	69
CCGTGTCTATTGCGCC	alt_2515_reverse	29	27	25	31	25	27	34	17	28	23
TGACTCACATGCCCTA	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTTTTCCCCCCTT	alt_2515_reverse	48	37	56	39	32	46	34	54	46	49
TCAGAGCCCTAGTATA	alt_2515_reverse	18	31	29	19	37	24	45	28	44	27
AATCGCACTGTTCTGG	alt_2515_reverse	10	21	22	13	28	21	18	12	28	7
CGCTCTACGAAATTTT	alt_2515_reverse	26	17	42	18	28	23	20	26	27	14
ATCTTTGTTGCCAGTT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
GGGTAATTTGGGGACG	alt_2515_reverse	13	6	12	10	7	7	19	13	16	12
TACAGTCTCTGACACG	alt_2515_reverse	30	44	30	28	61	33	35	25	41	24
GGGTCCGTATACCGTA	alt_2515_reverse	4	15	7	6	15	7	8	8	13	3
TTTGGTAGTTAAGTTT	alt_2515_reverse	16	27	27	16	26	18	28	32	26	20
TTAATTGTCAGCGAGT	alt_2515_reverse	32	28	49	43	41	40	51	33	51	30
TCGGCTTCTTGAAGAT	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGGCTTCATTTAC	alt_2515_reverse	151	160	180	165	159	160	157	144	179	137
GGGAGCCCATGTACAT	alt_2515_reverse	86	107	86	101	117	84	122	86	120	75
CCGCCCTCGTATGGGC	alt_2515_reverse	14	8	13	10	17	16	18	8	23	6
GTATAGGCAATTCTAA	alt_2515_reverse	1	12	3	0	10	2	8	2	6	4
AACTTTTCGAGTCAAA	alt_2515_reverse	8	5	13	4	1	3	9	5	9	7
TTCTATGTCTGGCATC	alt_2515_reverse	68	79	103	79	73	87	77	58	80	72
AACGTGTATCGGCCAT	alt_2515_reverse	5	7	5	4	6	5	10	2	6	2
GGTTGGTGATATGCTC	alt_2515_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCACCGATTAGG	alt_2515_reverse	87	85	111	86	66	102	90	91	94	92
TAGGACTCGTTCGCTA	ref_1819_reverse	25	16	24	22	12	13	24	20	13	14
CAACCGGGCTAAGCGA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TTCCACTGCAGTCGGA	ref_1819_reverse	29	49	44	38	47	28	47	29	39	24
GGGTGCCCCCCGTATT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
ACGGAGGGGCGGCTTA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
CAAGAAGAGCATTGTT	ref_1819_reverse	40	39	36	32	50	24	38	18	44	30
CACTTATATCGAGACC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTTCTCTATGGTA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
ACATGTAGACCAAGCT	ref_1819_reverse	36	32	45	28	49	34	38	20	47	35
GCTCTAGCTCTCACTT	ref_1819_reverse	11	24	22	14	27	8	21	14	18	15
TACCAACATAACCCCA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GATTTAGATATTTGGC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCTGTCGGAAGTT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAGACACGTTGCA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
ATATGAATAAGCCATT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
CCAAAAGAAATAACTT	ref_1819_reverse	65	64	79	55	69	58	67	52	75	40
TACTGTTTTATAGCGA	ref_1819_reverse	55	96	84	70	86	70	69	48	96	75
GAGGGATCTCGAATTT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
ATGCACTGTCCTTGCA	ref_1819_reverse	42	37	48	44	61	45	65	43	60	44
TTTGGATTATATCGTC	ref_1819_reverse	0	2	7	5	8	3	2	4	3	4
TTTTACTTTTGGTGAA	ref_1819_reverse	17	26	31	25	39	27	36	32	25	18
GTTGTTGATGTTATGT	ref_1819_reverse	30	49	42	37	43	30	54	47	43	21
CGTTCCCGCTTACAAA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCCATGTTGGTTT	ref_1819_reverse	151	134	178	160	167	142	149	138	142	135
TCATTGGACACATAGA	ref_1819_reverse	39	36	38	31	35	24	35	30	26	28
TCGGGACTGAGTCAGC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
CAGCACCCTTTGTAGA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTAGGCCCTCAGC	ref_1819_reverse	4	9	9	3	4	5	3	6	6	7
TCGTGCAAGAGCTATG	ref_1819_reverse	9	5	2	7	4	2	8	2	0	6
CTCCAAGTTGATACAC	ref_1819_reverse	2	4	9	6	11	7	12	7	9	3
CCCTGCGAAGGCGTCA	ref_1819_reverse	27	28	25	15	15	15	26	14	24	17
AAAGGCAAGCCGAGGG	ref_1819_reverse	34	59	56	41	55	40	54	34	69	48
TATACCTTGCGAGGCT	ref_1819_reverse	12	17	11	11	20	11	20	9	20	8
TAATTATGAACGCTCC	ref_1819_reverse	42	42	52	32	41	37	45	41	39	42
TGGGACCCTGGCAATG	ref_1819_reverse	176	236	196	180	167	168	248	122	259	148
TTGGGTCATCAGTGAT	ref_1819_reverse	10	19	13	24	20	14	31	14	19	12
CCTCTCTTAAACAGAC	ref_1819_reverse	55	78	64	62	92	37	102	52	95	50
TTTTATCTGGCCGTTT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GACTGTCTTAAGAGGG	ref_1819_reverse	69	61	59	58	85	45	87	40	81	54
ACCGTGGTCACAAGGG	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TGATTCTTTACGGGTT	ref_1819_reverse	19	18	25	14	18	7	23	13	37	14
TGTCTTTGCTTGAGAC	ref_1819_reverse	11	14	17	10	26	18	20	12	26	17
TAATTCTTGCCCCGCT	ref_1819_reverse	39	52	43	48	65	42	48	29	48	39
AAGTGGTTTCGGCTTG	ref_1819_reverse	28	54	51	39	44	37	53	44	42	26
GCACTCCGCCTGACGT	ref_1819_reverse	34	57	51	31	70	33	57	33	45	37
GGCCTATGTTTCTGCC	ref_1819_reverse	9	25	13	15	30	8	26	8	22	11
TGTAGATGTTTATTGC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TACCTAATTTTTGATA	ref_1819_reverse	6	9	14	12	13	10	21	12	14	10
TGCGTTATGTTCTTTA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGTTGTGCGTCTC	ref_1819_reverse	68	71	56	50	76	55	88	61	77	51
GCCCCTTCGTGATCAT	ref_1819_reverse	2	0	2	3	2	4	3	5	1	2
GTAGGCTGGGCCCCTG	ref_1819_reverse	41	41	42	39	53	64	56	44	53	24
ACCTTGACGCACTTGA	ref_1819_reverse	17	12	11	9	13	9	15	4	18	9
AGTTTGTCATGTCATT	ref_1819_reverse	17	22	7	25	29	8	23	17	32	10
CATGCTTCAAGTTTAT	ref_1819_reverse	15	35	17	17	31	12	43	20	37	19
TATTATTCTTGTAAGG	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TACAGGTACGCTTCGA	ref_1819_reverse	56	75	45	58	72	40	75	41	66	45
TCGGCTGGTTATGTTA	ref_1819_reverse	34	28	27	21	25	19	27	15	46	23
CTTCGGGGCATTAACT	ref_1819_reverse	17	12	18	8	19	13	9	12	10	7
GTGGATAGTTTTGTTT	ref_1819_reverse	28	32	35	23	31	25	41	25	34	28
GATGTTCTTGGTTGAC	ref_1819_reverse	4	6	1	1	4	2	9	9	6	1
TTATTTCCCCGACCAA	ref_1819_reverse	23	20	18	16	32	4	20	10	34	13
TATGAAGTGACTTTAG	ref_1819_reverse	2	1	4	2	3	2	3	1	0	2
CCACGAATCATGGCAG	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTCGTCTAGAACA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTTACATCCCGGT	ref_1819_reverse	42	47	44	41	35	22	49	35	59	29
CTCCTGCTGAAGCATA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GTCCACCACGGAGCGT	ref_1819_reverse	18	28	23	22	26	19	19	17	22	13
TTCAAGCCAACATCCC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
AACCATAGATGGGGAC	ref_1819_reverse	53	44	39	30	51	35	34	34	38	29
CGTGCACGTCACTGTG	ref_1819_reverse	20	48	39	17	49	23	61	23	52	29
AAGTCTTAACATGGTG	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
ATGTATTTCCTCCTGC	ref_1819_reverse	81	90	70	62	79	76	88	65	101	84
AACTTCTCTGGTTTGT	ref_1819_reverse	285	246	255	239	264	266	278	219	256	234
CATCCTTTACGAGTAG	ref_1819_reverse	110	158	147	133	162	106	162	125	140	121
TTATACCCCGCTCTGG	ref_1819_reverse	7	25	14	13	36	15	27	17	35	15
CGCTATCAATGGTAAA	ref_1819_reverse	35	43	47	47	59	28	58	40	55	31
TCCCTGGCCTCTAATT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAATTTTACGGCT	ref_1819_reverse	38	57	52	46	60	45	65	55	44	46
GGGGCGGGCCTCTCTT	ref_1819_reverse	32	38	29	18	37	34	44	38	36	21
TAAAGTGCTTTTCCTG	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GCATCATCCATCATCA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCGTAAGGACCCC	ref_1819_reverse	14	6	7	3	12	3	6	2	9	4
TAAGATATCGGCCTAG	ref_1819_reverse	2	8	5	1	5	6	5	2	7	3
TTTGTGGTAGGCTTAT	ref_1819_reverse	2	13	11	11	13	14	15	8	16	12
ACTCTCTGAGACTTGC	ref_1819_reverse	186	190	188	164	201	147	187	141	195	152
GGCCCCACGGACCCAA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGGTAGTCGCTTT	ref_1819_reverse	73	62	68	66	88	58	80	49	90	56
TCAATTGGCACAGACA	ref_1819_reverse	8	9	7	6	9	4	6	5	7	6
ATATCATCACTATCGA	ref_1819_reverse	28	40	46	43	35	17	45	28	48	23
AAAACAATCGTAAAAC	ref_1819_reverse	26	14	22	13	17	11	21	12	17	10
ATGCAATGTGTGGGTT	ref_1819_reverse	30	61	52	53	42	55	71	39	65	48
TTAAGTGCCCGGGAAG	ref_1819_reverse	48	50	50	76	75	50	69	62	65	45
CATCATTTTGTGGTGC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TACTTGGCATTCCTAT	ref_1819_reverse	26	41	33	17	39	30	45	25	32	23
TGTAATCATCTTAAGT	ref_1819_reverse	72	87	72	66	85	79	106	60	108	59
AGCTTATATATAGGCG	ref_1819_reverse	8	7	2	7	3	7	12	6	16	1
CGCCGCCCCTCCTGGT	ref_1819_reverse	47	88	77	54	58	72	100	64	103	59
TGTAATTGTCTCTGCT	ref_1819_reverse	56	52	62	50	66	55	71	35	80	49
AGCGTGTGCACGGCCA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGTTGCCCGTGTG	ref_1819_reverse	15	21	20	14	29	18	23	16	38	10
GGCTTTGGACTTCTGT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGTGGTATCACGT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GAAATCTAGGCCAGGC	ref_1819_reverse	15	15	20	16	15	17	23	23	11	12
TGCGACTTCTAGAACA	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
TGAATTCGCCACTCTT	ref_1819_reverse	54	42	76	65	64	51	54	57	69	47
GATGGAGTTCGGGTAT	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTAGTATCTCATC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTCCATGTTATT	ref_1819_reverse	7	14	10	8	10	8	13	9	8	7
CCAGGGAGTCGTATCG	ref_1819_reverse	28	22	24	13	27	13	28	18	28	14
CTCGATGGGCTCTCAA	ref_1819_reverse	7	10	10	7	6	7	9	5	7	4
CTAGCCGTCAGAGATG	ref_1819_reverse	31	64	60	55	77	55	83	42	67	41
GTTTCGGACAGGTTTT	ref_1819_reverse	14	7	6	3	4	5	10	5	13	4
AATATGTGTGCTCAGT	ref_1819_reverse	7	4	6	4	4	4	10	9	14	2
TCTGAACGCACGTAGT	ref_1819_reverse	5	8	8	8	14	8	14	14	18	4
CCTGAACCGGCGTTCC	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGTTCGAGCTGGG	ref_1819_reverse	8	9	12	3	10	7	14	5	6	9
CTTGCATCACGCTCTC	ref_1819_reverse	17	51	37	39	46	30	44	29	66	20
TCCGGTTTTGCATGAA	ref_1819_reverse	7	20	10	15	23	12	24	14	41	11
ATTATAACTCACTTCT	ref_1819_reverse	53	47	47	46	63	40	63	27	63	33
CTCCCGTAGCCTACTT	ref_1819_reverse	1	2	2	0	4	3	2	2	2	0
TCTAAGCTTTAGCAAT	ref_1819_reverse	138	168	160	177	212	142	206	133	195	150
CATAATGGTAAATGTG	ref_1819_reverse	0	0	0	0	0	0	0	0	0	0
CAACCGTACTTGGGGA	ref_1819_reverse	8	24	11	3	22	11	24	7	20	8
TGCCGAGCTTAATTTT	ref_1819_reverse	31	55	51	22	29	46	50	21	62	19
ACGGCGCATGTGAATC	ref_1819_reverse	64	90	92	65	76	62	101	77	88	46
TCTATTTCATTGGACG	ref_1246_reverse	114	143	138	118	117	104	155	122	162	100
TAATCAGGCTGCTCTG	ref_1246_reverse	68	72	65	65	82	61	61	54	81	48
CTAAGCCTTTGGTCCG	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGGCACAACGATA	ref_1246_reverse	10	5	17	7	9	8	11	6	10	6
AGCGTTGTTGCCGTTA	ref_1246_reverse	22	23	40	30	35	24	30	23	31	14
GTGGGTCCCCAACCTC	ref_1246_reverse	31	24	26	22	26	19	20	30	32	18
ATATTTCCATAGACCG	ref_1246_reverse	15	11	18	14	22	13	14	10	24	12
TTCCACCGCGTGTGAG	ref_1246_reverse	15	14	8	13	5	8	19	3	13	14
ACCCACTGTTTAATTC	ref_1246_reverse	23	32	32	20	30	27	36	31	48	27
CTACCGCTTGACCTTG	ref_1246_reverse	10	29	13	15	24	12	34	16	35	17
CTTCTCATGCGTACAA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGTTTTACCCGGG	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTGCTAGTATGGT	ref_1246_reverse	7	10	8	4	9	4	9	7	11	9
TGGATCAGTTTTTGTC	ref_1246_reverse	7	16	10	13	18	7	6	5	17	6
TATTTAGCAACAGGAA	ref_1246_reverse	43	55	44	41	55	46	38	47	63	33
AGCTCATTCAGTAGAT	ref_1246_reverse	62	71	73	81	103	69	79	68	92	58
CATGGTCTTGTCTGGA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGGCTCTCGATCA	ref_1246_reverse	0	2	2	0	1	0	2	0	0	0
ATAGTTATGGCCAGGT	ref_1246_reverse	40	36	37	35	42	30	48	34	39	24
CTTTAGCTCTTACCAT	ref_1246_reverse	24	42	26	25	50	14	32	29	48	12
CCACATGGTGATATTA	ref_1246_reverse	36	28	27	24	34	29	26	21	34	29
GACCCGCAGACTTTGG	ref_1246_reverse	14	12	19	21	17	16	14	16	16	10
TCGCGAGTTAGACCTG	ref_1246_reverse	24	50	43	41	40	35	25	25	23	33
TTGAAGTGGTGGTTTT	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCAGGACTGGACC	ref_1246_reverse	30	114	42	43	143	38	140	40	127	30
CGGAGTCGTTAGTGTA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTTCCCGCAAGT	ref_1246_reverse	45	74	60	47	82	36	102	36	100	44
AATTGTGTTTGTCTTC	ref_1246_reverse	24	21	24	35	25	39	42	31	33	29
TATCTGATGCTCATAT	ref_1246_reverse	12	17	15	15	12	10	12	10	19	12
GGTCATTACGTTTTGC	ref_1246_reverse	83	78	94	80	70	75	90	79	114	84
TAGGAAGCTGTCTAGA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTTCCTGGGGAAT	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
CAATTGTCTTCCCCCT	ref_1246_reverse	9	22	24	18	21	13	16	24	30	17
CTCCGCCTGCGCAACT	ref_1246_reverse	155	187	194	149	191	159	212	139	204	132
CGGCTAGGACTTCGAC	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
GTATCACTGCCCTGAA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCTGAATGTTATC	ref_1246_reverse	44	45	44	43	47	43	56	55	72	37
TTCGTCGAGTGCTGTG	ref_1246_reverse	54	60	60	56	49	55	76	55	72	44
TTACAGCTTCCTATTA	ref_1246_reverse	6	18	16	12	17	12	30	15	16	11
CATAAGAACGGAGGAT	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCATCTCTGATTT	ref_1246_reverse	47	62	45	40	45	34	58	36	56	36
TTACTCCCTAGATGTC	ref_1246_reverse	24	126	34	22	110	20	89	22	104	11
TACATGAAACGCTCGG	ref_1246_reverse	46	58	56	41	34	35	52	22	45	33
TCATGGTCTGGATCCG	ref_1246_reverse	90	148	145	114	121	121	146	86	158	128
CTGATGATTCTCCATT	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
CAATTCAGGTGTATAT	ref_1246_reverse	39	76	55	44	63	44	60	57	46	47
ATTTAGGTCGTCCTAC	ref_1246_reverse	55	75	72	41	75	48	63	71	84	50
GACTTTTTCCTGCCTC	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
TCACCCGCTTGCTCCG	ref_1246_reverse	50	48	38	46	40	37	69	44	63	42
AGGCCTCTCGAGGTAC	alt_1246_reverse	19	25	19	10	20	21	31	16	14	23
ACCCCACGGTAGGGGA	ref_1246_reverse	18	18	16	19	23	20	24	19	21	14
TCAACGTTTATGTCGC	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
GATCTTCGTCACTTAA	ref_1246_reverse	93	82	100	79	95	71	106	83	105	85
TGGTTGAGAAGACGTT	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
TATAATTTTTTGCAGA	ref_1246_reverse	60	73	65	56	46	49	69	56	66	49
CTTGGACCCCCCGACA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGCCAGCTCTGAG	ref_1246_reverse	86	93	108	75	85	85	85	73	110	75
GCGTACATGGATACCG	ref_1246_reverse	169	182	188	140	186	147	169	136	178	143
TCTTGAGGGTGCCCCT	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGCTCCTGGGTCA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
GAATTGTGGTAGGTGA	ref_1246_reverse	25	34	25	18	34	18	34	14	32	27
TACTGTAGTCCTAGGG	ref_1246_reverse	14	20	10	14	13	13	15	9	18	9
GTAGAGGGCTATGATG	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTATGTATTTTCG	alt_1246_reverse	60	50	66	58	54	46	71	49	53	31
GAAATCCGCGTGGCCG	ref_1246_reverse	1	3	2	2	4	6	2	2	1	3
CGTGGCGCAATAGGCT	ref_1246_reverse	13	28	25	17	25	20	22	12	29	16
ATAAACTTTTCAGGTT	ref_1246_reverse	17	13	14	9	16	16	16	15	26	22
CGTCATTTCGGTTATA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCTTTTAAACAGG	alt_1246_reverse	45	84	73	58	78	43	78	62	81	32
ACTTAGTTCCTACTGT	ref_1246_reverse	38	63	49	46	97	32	69	38	79	32
CTGTTGCCACCATGGG	ref_1246_reverse	29	30	36	25	45	36	25	22	25	23
TTGTCTGCTGTGGACA	ref_1246_reverse	17	16	16	16	22	28	25	19	30	17
CCATTTCGTTTCGCGC	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
CCTGCTACTTGTTTAT	ref_1246_reverse	8	1	10	2	7	7	13	4	8	5
GCATTTATATTGATGT	ref_1246_reverse	13	12	19	12	13	20	15	11	15	17
TAAACGGACAGTAGGC	ref_1246_reverse	35	48	35	27	37	30	44	26	51	36
TCCGATGTTAGCAAGA	ref_1246_reverse	212	206	217	201	208	212	192	202	256	193
TACGCATAACCTCCAA	ref_1246_reverse	0	0	0	0	0	0	0	0	0	0
TCCATTGAGAAGGCGT	alt_2817_reverse	16	38	15	21	32	14	23	21	23	20
GAGCATCTTGCCCTGG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TACTTACGATGCGCTT	alt_2817_reverse	2	10	2	3	6	1	5	3	9	3
CTGTTGGTTCTACGTT	alt_2817_reverse	20	38	36	16	40	25	26	15	41	19
ATTGTTTCGGATGATG	alt_2817_reverse	22	29	24	22	26	19	33	18	23	20
GTGAGTGACAGGTTAA	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGGCTAAGATTA	alt_2817_reverse	11	5	22	8	10	10	10	4	11	6
TGGACTTGACTGCGAA	alt_2817_reverse	1	1	1	3	7	4	0	1	3	2
TCGATGACATAGCCTT	alt_2817_reverse	20	16	12	16	16	13	23	9	19	17
ACACTTGGGGCTCAGA	alt_2817_reverse	7	10	8	12	14	8	8	7	12	3
GTGTAACCAATAACTC	alt_2817_reverse	6	11	13	6	9	13	21	9	12	6
TGGCGTTTATGTATTC	alt_2817_reverse	2	6	5	1	6	5	1	3	0	2
TTTGGCCAACATACTT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CCACATGCTCAGCGGT	alt_2817_reverse	57	98	94	111	99	77	92	92	92	78
AACCCCTTTACGGACC	alt_2817_reverse	10	19	12	21	27	12	22	16	27	10
CCTGGTATTCATCCAT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAGAAGGTTATCG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCACTTTTTATTT	alt_2817_reverse	1	0	3	3	3	1	2	1	2	0
CGCTATTGTCTAGGTT	alt_2817_reverse	3	14	9	3	7	1	11	0	12	2
AAGGTATTGTGCTTAA	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGATTTATCGCGT	alt_2817_reverse	34	39	23	26	35	21	28	16	38	33
CAAATTCAACATGACC	alt_2817_reverse	53	61	48	47	50	34	49	32	57	31
AGCTTCATTCCAGTTC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GGTAAGTGTGTATTAA	alt_2817_reverse	0	0	0	0	0	0	1	1	1	0
AGTCTCGCCTTTTAGT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGCCGGTCTGATT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTTATCTAGCACTTAG	alt_2817_reverse	5	13	16	13	20	8	18	11	23	8
GACACTTTCTTGAGAC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTCATCTCCGCTCTTA	alt_2817_reverse	14	21	14	11	27	12	12	7	15	8
CATTGACCTAACCAGT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGATGTGCGGGAT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CTGGACACCTATTTCG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGTTAATGTACGA	alt_2817_reverse	8	5	8	4	12	2	5	5	11	10
TTTTCTTTTGTTTTGG	alt_2817_reverse	40	40	65	32	51	44	50	49	38	35
GAGTCTATCGAGGTCT	alt_2817_reverse	17	18	10	14	29	11	26	15	24	20
GAATTCCGGATGAGCC	alt_2817_reverse	22	28	22	22	18	23	27	16	35	7
GGAACTGGTCTGGTGA	alt_2817_reverse	7	4	5	4	0	2	4	4	7	4
GTACAAATCTTCGTTC	alt_2817_reverse	34	52	40	26	49	33	55	30	46	30
TATTTTTCTCCCTGTT	alt_2817_reverse	20	33	21	22	16	9	24	17	18	21
TCGTTACAAAAGCCGA	alt_2817_reverse	16	9	15	16	11	8	19	11	25	8
GGTCTCTCTGTGCGCG	alt_2817_reverse	34	38	35	30	43	31	53	22	49	36
TGTACGGGCAACGGGA	alt_2817_reverse	21	30	25	15	29	15	22	7	26	17
AATCGATCAGACTACC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CACACTACTATTACAT	alt_2817_reverse	2	16	7	4	15	8	18	7	9	6
GTTCTCCTTATTGGAT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTGTATATCTGT	alt_2817_reverse	73	101	108	61	126	60	111	63	125	67
GCCCCGTACGTGGGAC	alt_2817_reverse	42	68	57	47	65	43	63	46	64	37
TTCTAATTGCGCTAGC	alt_2817_reverse	11	6	7	4	12	11	15	5	12	12
CCGTTTTGAGTGGTAC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CGTGCCTCTTTACCGT	alt_2817_reverse	6	3	5	5	14	3	6	7	11	5
ACTGTTACCAACTGCT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAATAACTCTTAC	alt_2817_reverse	7	1	4	4	9	2	3	3	10	1
GTTGAATCGCTTTAAA	alt_2817_reverse	28	44	27	24	36	20	34	18	38	25
GTTATTGTTGCGGGAC	alt_2817_reverse	5	9	2	8	10	5	6	3	5	6
ATTATCAATCCTGAAC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCAACTACGGGAT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CTTACATCGCTGTAGT	alt_2817_reverse	34	30	37	25	49	26	35	29	32	16
TTTGCCACATGTGCGA	alt_2817_reverse	24	32	23	23	28	24	27	19	32	20
TCCTAAGGACTCGGCT	alt_2817_reverse	38	33	30	27	47	24	40	15	43	27
TCGATTAATTTTGACT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTGCCCTCGTCAT	alt_2817_reverse	5	8	6	8	2	3	4	3	4	2
TATCCTCGGCGGGATC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGGGTTTTGGTCC	alt_2817_reverse	39	61	46	40	65	46	82	24	68	32
CAACTATTGGTGCATC	alt_2817_reverse	16	49	19	13	47	12	43	18	30	11
TATCTTTGTACAAGGA	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCAAGCAGATTCA	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTTGACGTTGATA	alt_2817_reverse	2	5	4	2	6	6	5	5	7	3
TTTTCTTGTCTGTTGA	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GTATGAATCCGCGAAG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGACTTAGTCACA	alt_2817_reverse	13	17	12	11	13	11	22	10	26	11
CACAACTAGCCGCATA	alt_2817_reverse	42	73	54	42	85	42	70	49	66	47
TCCTTTCGACGAGGTA	alt_2817_reverse	61	97	76	62	91	76	107	74	78	47
TCTAGTCTTATTCACC	alt_2817_reverse	6	20	16	9	25	16	20	9	18	11
TCTGTGGAATACCGGT	alt_2817_reverse	31	50	42	28	61	22	68	28	62	16
AATTAAATATCCTGTC	alt_2817_reverse	28	41	31	16	30	20	45	27	26	18
ACGGGCGTTTTAAGCA	alt_2817_reverse	11	23	15	17	12	8	21	10	11	9
AATTTGTTGAAGATCG	alt_2817_reverse	19	17	11	15	20	17	17	17	23	4
TTTCTGAGCATGAAGG	alt_2817_reverse	8	8	1	4	3	5	12	1	10	6
TTCCTTGGTAAATTCC	alt_2817_reverse	60	76	80	64	81	55	85	64	84	57
GGGAACATTTTGGCCC	alt_2817_reverse	31	42	35	31	41	30	50	22	41	27
GTATAAGCTCGGCTGC	alt_2817_reverse	9	18	8	8	19	14	22	19	11	8
TTATATGTTTATTTAG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGGCGTTGTCCTT	alt_2817_reverse	3	7	4	8	12	3	9	5	6	3
CATCAATATTTTCTAA	alt_2817_reverse	4	18	8	19	14	12	15	8	15	13
AATGTCCCGATTAGTT	alt_2817_reverse	6	15	16	10	19	11	10	12	9	8
CCTTCTGGGTACTCCC	alt_2817_reverse	18	45	18	7	44	19	22	21	29	12
TTGATGGAATGGTAAT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTCAGTGGGCATC	alt_2817_reverse	31	66	46	50	63	44	59	37	76	31
GTCTATCGAGCCGTGA	alt_2817_reverse	3	7	9	3	7	4	9	6	11	3
GGGCTCCTGGGACTAA	alt_2817_reverse	3	2	2	4	4	3	5	5	5	1
TTTAGTATTGGGAGGT	alt_2817_reverse	47	58	44	53	77	41	59	52	99	34
TTTCATAAGCGTCAAT	alt_2817_reverse	32	27	27	32	51	26	36	39	50	22
ATGCGTAGCCATCTGT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGTACGTTTCTA	alt_2817_reverse	12	25	22	16	22	18	22	13	22	13
CAAAGCAGCACCTCGC	alt_2817_reverse	11	10	9	7	9	12	18	3	17	5
TTGCCTATTTTCTTTA	alt_2817_reverse	10	16	11	10	12	16	10	9	11	7
GGGGACACCAGAATAT	alt_2817_reverse	5	8	12	5	8	6	8	7	5	10
AAGTGAAACCGCTAAG	alt_2817_reverse	32	53	39	33	50	33	41	31	65	32
ACTGTTGCGAATCTCT	alt_2817_reverse	20	30	23	24	30	16	26	18	27	14
GAAGCCCTAGTTCAAA	alt_2817_reverse	3	3	3	3	3	0	1	4	5	2
TCCTTGGTTGCTTCAG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTCGGTTCTAAAA	alt_2817_reverse	43	43	34	31	52	29	57	35	40	34
CCACTCGCGATAAGTT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATTGAGAGTACAGTCT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
ACATACTGGGAGTCTG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTCCGCCCCTGAA	alt_2817_reverse	27	45	34	27	41	48	43	32	50	34
TGTGAATGTGACCTTC	alt_2817_reverse	47	70	58	45	64	52	76	42	73	43
CAGTTGCTCTGTGTTT	alt_2817_reverse	22	26	29	14	30	22	57	19	45	19
TTTCTCCCTGTACTCG	alt_2817_reverse	17	46	21	24	33	15	40	12	36	21
GGGTTTACTGACACTT	alt_2817_reverse	20	29	16	18	29	16	37	19	37	14
ATTTACTGGACCCGGA	ref_2817_reverse	192	254	237	192	263	168	267	161	262	147
GTATCGTTATGGCTTT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGCTGCAAGCGCT	alt_2817_reverse	2	7	9	5	7	1	11	3	15	5
ACTCGTTATGTCTATG	alt_2817_reverse	1	0	0	0	0	0	1	0	0	1
TCCAAGCCACACTAAA	alt_2817_reverse	26	43	23	31	49	18	63	20	49	18
GACATTGCAATTTAAG	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTTTTTGTCATCC	alt_2817_reverse	59	58	74	59	48	36	68	44	52	42
TGGATGATGCTTGAAT	alt_2817_reverse	4	5	3	4	4	4	5	2	4	2
GAAGCGACTTCCCGAT	alt_2817_reverse	8	6	4	6	14	2	2	4	8	5
GTTCTGTGTCGGGCAA	alt_2817_reverse	37	67	50	33	68	53	63	35	72	28
TCGCGTTGTGCGTAAC	alt_2817_reverse	10	17	16	12	17	10	20	14	24	13
CTGCTTCTCGCACTAC	alt_2817_reverse	4	4	2	2	11	3	4	7	8	4
GCCCACGGACGGGGCG	alt_2817_reverse	1	1	0	1	3	0	2	0	6	2
GTCCCGGATTTTTCTC	alt_2817_reverse	21	26	21	20	27	21	33	25	35	12
GGGCCGCACATCTCGT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CACATAGAACTGTTGG	alt_2817_reverse	19	23	22	24	58	33	28	25	40	24
GTACTAATTCCGTAGA	alt_2817_reverse	18	29	15	28	22	17	24	21	36	12
CTGATCGTTTAAGCCA	alt_2817_reverse	83	120	120	120	105	71	137	93	144	94
CACCTGTTCTTCGGAA	alt_2817_reverse	2	3	2	0	8	1	8	3	7	3
ACTTTTTTCCCTTGCG	alt_2817_reverse	49	90	76	57	88	47	85	56	82	39
TTCTAACGACGAGAGG	alt_2817_reverse	7	13	18	13	14	10	12	15	17	6
GTTCCAGAATTGAATT	alt_2817_reverse	6	14	12	4	17	12	6	12	12	5
TTGTTCCGCGCGGAAA	alt_2817_reverse	14	16	17	18	19	10	14	10	16	8
ATTGACCCGGCACTGC	alt_2817_reverse	4	17	4	7	11	5	9	4	13	6
GACAGTTCACCGCTTC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCTCTTTGCCAAG	alt_2817_reverse	22	22	10	9	20	13	14	8	15	12
GAAGTCGCGTCGGATA	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGACGGAGTACA	alt_2817_reverse	5	32	9	9	22	11	24	13	31	12
CCTGTGGGGTCAGACA	alt_2817_reverse	1	14	1	4	5	4	6	1	9	0
GCGTGCGCGTGCGTAT	alt_2817_reverse	37	50	32	39	42	26	58	28	40	21
GTCTTAGCTATGCAGA	alt_2817_reverse	232	300	281	223	313	188	337	212	380	176
ACGGAACGTGGACTGA	alt_2817_reverse	8	10	6	6	13	7	5	1	10	3
GTTCCGCACAACGTTT	alt_2817_reverse	64	94	68	54	98	78	96	61	118	56
TGACAGGCACCGAACA	alt_2817_reverse	13	18	18	12	20	9	30	28	25	14
AGCCTGTTCGCAGTTT	alt_2817_reverse	38	84	42	37	70	40	79	29	86	35
GGACACAGGACAAGGA	alt_2817_reverse	48	39	51	51	47	36	38	31	70	40
GACTTGTTCACATTCA	alt_2817_reverse	15	28	24	16	28	17	34	32	26	16
CCAGTGCCACGCATCT	alt_2817_reverse	4	14	10	6	8	10	13	9	10	9
TTCCAATGTGCTAAAA	alt_2817_reverse	9	30	24	13	34	14	28	10	27	16
AAGCGTATTTAGGAGC	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTATAGTCCACTA	alt_2817_reverse	46	64	54	43	57	41	72	46	72	54
TCGTGTAGCGGCAGTA	alt_2817_reverse	13	15	15	16	21	11	18	13	10	14
TGTCGGTCTGATGAAT	alt_2817_reverse	2	2	4	6	3	3	5	6	11	5
GATACGGCTTTCCACT	alt_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGGTTTTCCTTCA	alt_2817_reverse	10	7	4	5	13	4	5	8	12	5
GCTTCCGTTACGGGTT	ref_5778_new	3	9	10	9	4	5	8	5	4	6
GTTCTCGCTCCGTATA	ref_5778_new	25	19	19	23	28	21	23	17	34	25
TGGCAAGCTTGGTAGG	ref_5778_new	1	0	1	1	2	0	5	2	2	0
GCCGATGGAGTGGCAA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
ACCTCGTCTTCACAGG	ref_5778_new	42	65	57	51	58	32	68	54	48	39
CGCTCCTGTGGAGCTT	ref_5778_new	59	57	51	65	54	49	59	33	54	44
TCCATTTAGTTCCGTC	ref_5778_new	15	21	19	11	21	18	20	4	20	12
ATGTACTGATACGCAC	ref_5778_new	58	62	79	64	47	69	69	64	89	42
GGTGTATATTTGGTCT	ref_5778_new	65	49	107	93	42	90	43	83	44	90
ACAATTTGTCAGCCTC	ref_5778_new	14	14	19	28	14	15	22	17	17	13
TCATTCTTTGTCCAAA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
TGATGTTGTTCCACGT	ref_5778_new	12	16	21	15	28	10	19	21	20	13
TGACCGTGGTCATCAG	ref_5778_new	46	44	48	42	43	49	54	29	52	47
CGGGTACCACTCAAGA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
CACGCCAATTTAGGCG	ref_5778_new	1	2	6	1	5	2	9	1	5	1
GGTGCATCCCTGCGCT	ref_5778_new	25	17	33	31	24	29	35	30	22	23
ACCATGTTTCCTCTTG	ref_5778_new	66	67	92	66	57	66	80	57	81	71
TAAGTGCAAGGTTTTT	ref_5778_new	50	58	48	51	62	68	60	35	65	57
TCTTATAACTGTTCTG	ref_5778_new	79	96	94	91	95	63	87	70	85	71
AAATGTTGGTCAAACC	ref_5778_new	46	49	47	40	42	30	41	38	43	45
ACCATGGCACCTGATA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GCCTTATGGAGCACGG	ref_5778_new	33	22	36	35	35	39	45	34	27	21
CTCCGCGGTTTTAGTC	ref_5778_new	23	26	35	22	29	23	19	27	37	14
ACGATTGGCGAATGTA	ref_5778_new	65	70	80	68	60	81	75	52	70	55
GCTTTAAAGCAGCTAT	ref_5778_new	29	33	38	23	24	36	33	34	29	23
TACGCGGGTTCCTCTG	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GAATTGGTTTGCCACC	alt_5778_new	1	1	3	2	0	2	1	0	4	1
CCCCTGGTTTTATGGG	ref_5778_new	40	58	75	73	59	49	77	51	68	47
CCAGATGTGTATAACT	ref_5778_new	0	0	0	0	0	0	0	0	0	0
TCTTGTAGAGTCTTGA	ref_5778_new	19	11	17	24	28	17	27	11	24	16
GTCTCGCGGGCGTAGC	ref_5778_new	28	33	30	39	30	22	35	37	31	20
ATACGGTCTTGTAGCA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GCGATTGCACTGGCAT	ref_5778_new	0	0	0	0	0	0	0	0	0	0
TAAGATTTGTTTACGC	ref_5778_new	0	0	0	0	0	0	0	0	0	0
CTCCCGTCTTGTCTTG	ref_5778_new	9	30	6	18	32	17	27	12	18	8
CCACCGTCGTTAGAGC	ref_5778_new	72	98	59	48	106	51	116	47	125	48
TTATCTTATAGTCTGG	ref_5778_new	0	0	0	0	0	0	0	0	0	0
TTCGTGTCCAGAGGCG	ref_5778_new	18	25	30	15	28	19	25	24	27	22
CGGACGAGCGATCGAG	ref_5778_new	0	0	0	0	0	0	0	0	0	0
CGTGGTATATTGATTA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GGTCAGGCGTTTGGAG	ref_5778_new	0	0	0	0	0	0	0	0	0	0
ATACTATGTCGGACAT	ref_5778_new	2	6	5	10	10	2	11	7	7	9
TTCATTCGCTTGTTTA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
TGAACTGCATACCCCG	ref_5778_new	36	50	74	57	79	52	66	66	65	48
TTCCGTGTTCTATGAT	ref_5778_new	44	41	50	35	37	44	40	43	49	50
ATGTATTTACAGAGTC	ref_5778_new	92	85	84	94	84	88	80	75	94	92
TTTCGGATAAGCAGTG	ref_5778_new	257	269	335	242	294	239	311	260	274	234
TTCTCTAACTGAATCA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
CTTGACGAGCAACAGA	ref_5778_new	32	50	40	31	34	30	50	50	33	27
GGAATACTTTGATCGT	ref_5778_new	14	14	25	19	21	16	9	19	10	15
TCTCGTACCACTCGAT	ref_5778_new	5	8	10	15	11	6	13	8	6	10
TAACGACTTTAGCGCA	ref_5778_new	55	85	81	59	74	63	66	75	70	47
GGAGATCGCTATTGTT	ref_5778_new	77	81	107	77	57	48	93	81	72	75
CAAACGTCATCCCGAG	ref_5778_new	23	17	29	27	26	18	39	17	27	21
CAGGTTGTGCTTTAGG	ref_5778_new	0	0	0	0	0	0	0	0	0	0
CTCACGGGGGTTTGTT	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GGTTCGATTCACTCTA	ref_5778_new	29	26	29	49	40	41	41	43	36	21
AACGTTCAAATAGTAG	alt_5778_new	50	44	80	58	56	55	80	35	80	46
TCTATGTCGCAGCCGC	ref_5778_new	3	5	2	2	2	1	1	1	8	1
GGATGTGTTCGACGAT	ref_5778_new	20	22	23	20	18	26	15	10	16	8
ACGCATCTGCATGTGT	ref_5778_new	0	0	0	0	0	0	0	0	0	0
CGGCCGAGCGTCGTAG	ref_5778_new	283	197	292	207	208	227	211	179	221	236
TATTACTCCTTAATAC	ref_5778_new	67	70	70	48	58	50	66	41	72	48
CAGGAGTGGTTTTCTA	ref_5778_new	31	25	25	18	29	15	21	21	31	18
ACGTGACGCGCATCCC	ref_5778_new	24	32	36	29	27	19	30	10	27	31
TCCCCGTACGCCCCGT	ref_5778_new	4	7	4	3	3	5	1	5	4	3
GTCACTCCTGAAGGTT	ref_5778_new	10	17	14	11	18	12	24	7	15	12
AATAGGATAACATGAA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GTACACACCACTTCAA	ref_5778_new	7	6	6	8	12	6	17	5	23	4
GATACACATTAAGTTT	ref_5778_new	26	10	18	25	12	17	15	23	11	17
GTGCCTCGACTCCCGG	ref_5778_new	51	43	61	56	39	42	40	36	54	37
GTTACAGGCGTGGCCT	ref_5778_new	30	22	40	29	35	27	33	26	32	15
ACTACCAGCCGGCCAT	ref_5778_new	38	41	33	43	30	31	31	44	34	34
GCGTTAAATATGCTGA	ref_5778_new	27	30	28	29	56	30	46	36	58	28
GTATCAGCTCTTGGTC	ref_5778_new	87	83	91	102	63	84	86	73	88	79
GCACGCTTTGCTGCGA	ref_5778_new	22	24	27	22	18	13	24	21	18	10
CCACCACCACAGGCTG	ref_5778_new	25	11	21	17	23	19	22	9	20	9
GTCCAGGATGGCTTCG	ref_5778_new	6	11	10	8	16	11	14	10	17	7
TAAACAGAACCTGACT	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GGTCGGCCGAATTTGG	ref_5778_new	79	73	105	75	83	62	104	81	91	94
GGCAGGTTCCAGTTCT	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GTAAGCCCATGACGCT	ref_5778_new	22	30	34	32	32	26	19	41	32	25
GTCCTATGTGTGTGTT	alt_5778_new	195	215	185	194	199	182	224	152	197	150
TAGTGCCTGGCGGTCG	ref_5778_new	110	103	137	132	109	102	119	128	115	111
CGGCAATATGGCGTAT	ref_5778_new	55	36	55	54	36	48	44	66	35	61
ACGCGCGACTGCGATA	ref_5778_new	236	233	282	227	220	222	235	199	226	216
TGTCTGCGATGAAAAC	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GACTGTATGTATTAAC	ref_5778_new	61	72	72	70	87	44	72	47	70	58
TTGCGACTGAGAGATA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
TAATACAGGCCCGTGT	ref_5778_new	56	34	60	58	60	44	62	44	57	47
TTACGGGTCGTAGCAT	ref_5778_new	11	6	9	16	6	4	9	10	6	9
ACTTTGGTTTGCTTTA	ref_5778_new	5	3	5	1	3	6	4	7	1	1
CCTGTTAGGTTCCTAC	ref_5778_new	4	14	2	7	15	2	12	5	9	6
GCATCACAACCTTCCA	ref_5778_new	22	30	36	21	26	26	50	28	32	24
TTGTTTTCCGTGCTCC	ref_5778_new	67	56	82	69	66	72	58	73	64	74
CGGAAGTTCATCCTGC	ref_5778_new	0	0	0	0	0	0	0	0	0	0
GGCACGAATTTACCGG	ref_5778_new	59	61	73	49	53	47	46	48	68	56
CCTCTGAGTCATTTTA	ref_5778_new	7	5	4	11	11	3	4	8	8	4
TAAGGTTATGTACACA	ref_5778_new	0	0	0	0	0	0	0	0	0	0
TAGCCGCCACTGGGTT	ref_5778_new	21	27	31	23	24	25	23	25	37	24
AATCATGTGAGGTTCC	ref_5778_new	60	77	56	69	68	56	78	53	57	72
TCTATTGCTTTTAACG	ref_5778_new	39	46	50	53	43	44	50	37	60	40
TGGTTAGCCCGTCGTC	ref_5778_new	9	33	19	20	14	16	15	14	18	17
TGTACCTTGTTCTAGA	alt_5778_new	0	0	0	0	0	0	0	0	0	0
AGATATAGTGTAGTTG	ref_5778_new	107	107	157	120	102	101	109	110	99	98
TTTCTGACATACGCCT	ref_5778_new	121	83	117	97	94	90	106	72	107	97
CTCAGTGGATTCAACA	ref_5778_new	26	19	29	21	20	13	33	28	26	20
TCTAGATTTGCCGTAC	ref_5778_new	0	0	0	0	0	0	0	0	0	0
CGGGTCCGGCACTGTT	ref_5778_new	75	74	86	85	72	70	76	61	90	70
CGGAAAACATAGTGCG	ref_5778_new	25	38	41	25	22	44	34	27	24	31
ACTTTATGACGGACCG	ref_5778_new	20	19	18	18	11	15	19	26	28	13
TCTACGTTCAGAAGCG	ref_5778_new	67	50	86	73	70	69	70	61	50	65
TACTGGGCGCCTTAAC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
AACCTCGACCCTTAGG	ref_5778_new	137	191	208	188	189	130	208	175	179	154
TGTCAATTTGTAATGT	ref_5778_new	16	16	17	12	11	13	15	25	13	9
GTGTCTGGTCAGCACC	ref_5778_new	63	51	79	69	74	75	66	60	70	57
GGGCTAAGTTGATGGC	ref_5778_new	89	89	116	93	101	84	80	87	97	86
TCTCTAGCGTAGGTTA	ref_5778_new	56	48	58	31	47	49	57	49	66	44
AGCATAATTCTTTGGG	ref_5778_new	0	0	0	0	0	0	0	0	0	0
AACGGGTTCTTTGTAA	ref_5778_new	15	26	14	16	16	14	11	9	27	19
CTCTTCACACCGATCT	alt_1198_fdr	21	14	25	20	18	12	24	27	27	22
CGCGAGTGCTAAATAG	alt_1198_fdr	14	11	19	19	13	19	5	15	9	11
CTTTCTGTTCTGGTGG	alt_1198_fdr	12	11	14	9	7	5	10	6	5	8
TGGTGGCCGTAAATCC	alt_1198_fdr	10	5	10	13	6	13	12	11	12	12
AATTATGGGAACCACG	alt_1198_fdr	36	17	34	19	24	23	19	19	30	17
TGCTAACTAATACCAA	alt_1198_fdr	66	67	73	61	42	69	50	64	72	45
AGTCACGCGCGTCATC	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
GAAAGTACTAAGTTTC	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAGCAATACTTTC	alt_1198_fdr	20	20	48	27	27	32	20	47	29	36
TGGAAGAGTTTGGAGT	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTAGTCACGCTCG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTTCGGCTTATG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
AAGATCACGATGGGCC	alt_1198_fdr	135	83	136	113	85	144	85	86	82	111
AATTACCTGCCCGGGG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TAGCATTTTTCGGTTT	alt_1198_fdr	99	69	118	100	63	82	69	98	82	82
AAGTCGTGACGTACTA	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
GGGATTTTGTGTTCGC	alt_1198_fdr	17	17	34	15	23	17	28	22	27	30
TTCATCTATTGGCCTT	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGTGTAGATAAGT	alt_1198_fdr	256	189	277	239	146	258	173	217	198	217
GACCACGTTAGCGGAT	alt_1198_fdr	26	13	28	16	13	14	17	15	16	16
CAAGCGGATCATCCGA	alt_1198_fdr	510	362	611	514	322	459	353	478	389	439
TCGCTCGGCCTTTGTG	alt_1198_fdr	164	124	208	154	143	152	148	155	146	148
CAGCACGGTCGGCCGC	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTCGCCGACTGTG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTGCTCTGGTGC	alt_1198_fdr	113	133	135	138	152	109	154	107	162	114
TTAAACCAAGTACCAT	alt_1198_fdr	76	42	82	70	55	68	45	57	63	78
CACGCTTCGCGAGTAG	alt_1198_fdr	236	144	258	222	176	203	167	202	169	213
ATAATAAGGTTTTTCG	alt_1198_fdr	64	38	83	61	41	61	59	76	52	52
CGTTGGAAATGATTAG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCCAATGCTTTTG	alt_1198_fdr	6	2	10	4	1	8	6	7	4	9
GCTTTAATTCAACCCA	alt_1198_fdr	53	53	70	53	41	67	53	65	48	58
GCTCATCTCGATCAAT	alt_1198_fdr	11	9	12	12	16	15	15	11	8	11
GTGCCTAAGTCACCTT	alt_1198_fdr	48	35	41	37	44	48	25	36	32	29
TGAGCAGTCTATTGTG	alt_1198_fdr	78	46	79	68	48	70	56	69	62	71
AATTCCATGGCTACCT	ref_1198_fdr	277	200	327	273	242	270	214	265	216	253
AGGTTGGGTCTCTAGT	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
GGGACCGCTGGGCTTT	alt_1198_fdr	68	41	75	74	54	59	50	64	53	73
CTTACGCATCGTTGAA	alt_1198_fdr	34	23	31	36	21	34	20	29	31	30
ATCGGGCGAAGGTTTT	alt_1198_fdr	240	170	304	203	142	214	145	223	145	183
GCAGAATTTTCGACTA	alt_1198_fdr	10	11	17	10	8	9	9	15	8	8
ACATTCTAGATGTGGG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TGTGAATTGGTATGCT	alt_1198_fdr	36	28	47	30	28	28	30	37	37	17
CCTCAGAAGACGTGGT	alt_1198_fdr	22	18	28	18	17	35	29	25	28	32
GTCGGGCTTTAACTTC	alt_1198_fdr	96	59	95	69	46	80	77	51	73	79
CTCGCTAATTAGCCTC	alt_1198_fdr	175	152	245	203	130	185	166	141	166	153
AAGGCTCCGCAAGTAC	alt_1198_fdr	98	72	135	87	68	116	95	112	69	105
ATCGGTCACCTCATGA	alt_1198_fdr	36	19	43	43	29	41	28	41	25	42
CTCTAAGATATCGGAT	alt_1198_fdr	123	86	161	134	103	143	98	124	107	102
CCGACAGCACAACAGA	alt_1198_fdr	22	31	37	23	20	33	27	21	39	18
CCTAGTTTACCTAGGT	alt_1198_fdr	18	22	37	22	20	30	38	16	25	37
ACTAGACAGGTCTGCC	alt_1198_fdr	17	34	26	29	13	29	28	31	33	33
GGTCCATTGCGCCTCA	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
GATCGTTTCCTTAGCA	alt_1198_fdr	39	37	39	40	40	40	29	35	29	44
CCGACTCAGCGCACGG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
ATGCATCGACTTGCGT	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TGGCACACAGCACGCA	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGGTACCGCGCTT	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTAATAGGGAGT	alt_1198_fdr	92	73	129	124	92	98	86	109	95	112
AAGACCCTTTCTATAT	alt_1198_fdr	34	30	43	23	27	31	26	29	26	26
ATAAAGGAGCAAGCAG	alt_1198_fdr	91	51	109	67	66	70	57	58	63	68
GCGCCGCCACATACGG	alt_1198_fdr	0	0	0	0	0	0	0	0	0	0
TATGCGGAGGGGAGTA	alt_1198_fdr	19	11	20	23	11	8	18	9	14	4
CTTACATTCTACGTCA	alt_1198_fdr	89	39	83	63	57	62	55	63	47	47
TAGTTGGCGGGACCCT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TCGTCACGGATTCAGG	alt_3975_RC	54	30	66	67	26	49	37	45	23	56
GTCCAATTTCCGGCAC	alt_3975_RC	6	3	6	2	2	2	3	1	3	4
TTGTAGGGGCTACCCC	alt_3975_RC	118	89	150	149	97	114	82	119	82	107
ATAGCTTCACCAGTTG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CTGTTCGATATCGTGC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TCGATCAAACGGCGGT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GAGTTTTCCGTCATAG	alt_3975_RC	44	37	77	48	37	51	32	50	34	51
CCCCTCATACAAGATC	alt_3975_RC	48	37	54	62	31	48	34	45	34	38
TCGTTCTTATGATTTA	alt_3975_RC	4	4	6	6	6	5	3	9	5	1
CCACTCTTTGGATTGC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TAGTACATCAGGCAAA	alt_3975_RC	102	64	126	103	61	87	63	68	54	81
GGTCCGAGTGTCAGTG	alt_3975_RC	38	32	55	48	38	50	26	41	42	33
ATGTGGCTCATTCTGA	alt_3975_RC	15	9	8	6	5	12	4	6	4	18
TAAACCGGTGGGCTGC	alt_3975_RC	1	2	4	6	4	1	3	1	7	3
TGACCTTCTAGAACAG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TGATGCTGCGCATGAA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TCAACCAAGACTATTC	alt_3975_RC	18	11	19	30	11	15	18	23	27	24
CGCGGCTATGTATGTG	alt_3975_RC	58	51	67	55	43	42	48	51	40	53
TTACGCCACACGTGGC	alt_3975_RC	81	48	71	87	48	70	54	82	51	53
GTAAATAGAAAAATGA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTAATGTGGGATACTC	alt_3975_RC	81	48	108	86	52	79	43	78	61	65
CGCGCAGAACGGGGTG	alt_3975_RC	36	29	40	35	24	32	38	40	28	34
GTGCGGAATAGAGCCT	alt_3975_RC	24	7	22	28	9	21	20	15	15	19
CTGCTGCTTGATCCAC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TGTGCCCCTATTTCTT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GAAATGCCGGGACTGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
AACTTCAGTTTTTGCG	alt_3975_RC	26	21	27	28	21	26	16	33	25	28
CGCTTTCATTTTGCAA	alt_3975_RC	28	8	24	24	7	23	9	24	9	20
AACCCCTCTTTATTTT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CTATAGTACGCTGTTT	alt_3975_RC	14	7	13	13	11	11	15	6	14	11
ATGTCAGTGGCTTATC	alt_3975_RC	14	15	27	16	13	21	16	24	12	19
TTATGAGCCTTCTGTA	alt_3975_RC	10	2	3	7	6	6	6	4	2	3
GAAATAAATGCGAAGT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CCCTTTACGGTATCGA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
AGCCCCGATATGAGAT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GGGTATCATAAGAGGC	ref_3975_RC	69	15	83	63	16	64	14	60	21	57
CTGGCACTGTGTTGCA	alt_3975_RC	57	45	69	77	50	49	45	44	51	47
CCTACTTTGTCGCAGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
ATGTCAAGTTGTGAAA	ref_3975_RC	199	53	232	223	46	191	52	141	75	153
CGTAATCTGAGTCGAT	alt_3975_RC	22	16	19	25	13	21	15	30	26	20
TCCCATATTAGAACAG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CAATCTCGATATATAC	alt_3975_RC	29	26	43	32	33	35	19	25	26	21
GACCTTGCCATTTTTG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GATAGCCATTGATAAG	alt_3975_RC	198	130	242	197	136	184	144	200	130	171
GGTCCAATCCCTTTTC	alt_3975_RC	11	22	13	14	28	7	27	15	24	12
AACTTACACATGTTGG	alt_3975_RC	8	5	6	12	7	14	9	16	6	11
GGCGCCAGTCGATGCC	alt_3975_RC	100	71	116	88	54	101	55	103	99	94
CAATACTGTGAAATGC	alt_3975_RC	17	5	19	13	10	13	12	12	13	16
TGCCGCAACCGCAACC	alt_3975_RC	15	18	32	22	22	24	22	23	23	15
TCCCGAAATTCAGAGT	alt_3975_RC	45	58	51	49	60	51	62	57	66	47
AAGTTCGCGTGTTCTC	alt_3975_RC	83	64	94	127	57	83	56	79	61	73
AACATGCCGTTAACCC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CTGCTGATTTGGTTTT	alt_3975_RC	38	22	42	39	24	43	27	29	23	30
AATGCTACGTCGTAAT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GTGGGGGCTAAGCTGC	alt_3975_RC	239	156	325	293	202	295	205	289	184	241
GGTGCTCACCGTAAAC	alt_3975_RC	14	7	8	8	16	11	4	13	5	5
AGAATAGCCTTGGTAC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
AGAGGAGATACTTAAC	alt_3975_RC	21	18	39	43	17	43	37	32	33	26
AGTTTCTACGTCACGG	alt_3975_RC	45	26	47	38	25	32	25	35	29	36
CGATAGTCCGCCCTGT	alt_3975_RC	16	5	28	25	18	21	11	13	16	21
CTCTTCGGGCGAAGAT	alt_3975_RC	45	23	24	53	28	46	23	25	34	52
CTGGATTCTCTAATTC	alt_3975_RC	32	21	27	24	20	25	28	34	13	23
AGTTGATACAATGCAG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
ATGCCTAAGTGTTCAG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CCCTACATGCTTTCAC	alt_3975_RC	119	96	159	128	108	124	98	102	89	105
CAGAAATGTGGTCTAC	alt_3975_RC	2	3	11	8	2	7	3	8	7	6
TTGCTATGGCTGTGAG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TAATTTGTTTAACGTA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTCGGTAGCACGTCCA	alt_3975_RC	72	51	77	82	54	57	49	79	46	63
TGCCTCATGAATCTGT	alt_3975_RC	23	10	17	7	8	5	7	12	9	13
GAGTAATACTTTCCTC	alt_3975_RC	21	21	32	30	25	28	23	48	35	27
AGAATCCATTGTTCCA	ref_3975_RC	40	18	46	46	26	32	33	39	35	28
GATAGGTCTCAATTCT	alt_3975_RC	48	33	60	58	28	49	34	68	46	30
TGTAGGAGGGGATGTC	alt_3975_RC	16	9	22	18	9	22	19	16	13	17
TAGGATGACCCTCATT	alt_3975_RC	2	3	0	6	2	5	2	2	1	6
CGAACCCGTCGTCAGT	alt_3975_RC	5	4	12	10	3	8	8	6	12	1
TGAGAGCTTATCTTGG	ref_3975_RC	82	19	116	94	16	89	20	89	26	72
TCTTCCGGATCCCGCC	alt_3975_RC	44	28	59	53	26	46	31	56	28	45
ATCATCATCTGATAGT	alt_3975_RC	2	3	2	4	6	1	5	3	3	3
TAACCGGATTGGGGTG	alt_3975_RC	10	20	6	12	16	10	22	10	29	4
GAATTGTGTTTTACCT	alt_3975_RC	14	8	12	15	12	17	13	15	14	14
ACTAAACGCATACTAC	alt_3975_RC	153	126	166	153	110	135	141	152	138	153
CGGTTTCCTACGCACC	alt_3975_RC	5	16	10	6	9	10	15	8	1	8
CCTGCGCTAAACCAGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GCCTCTACCCCGCACT	alt_3975_RC	11	10	23	16	7	22	8	9	6	14
GTTCCATTGATGTATT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TGGATTCTTATTTTTT	alt_3975_RC	78	41	74	87	43	67	29	64	25	63
TCGCCATCAGGCTTGT	alt_3975_RC	56	50	57	54	54	41	39	54	37	58
CCACTATAACAGCTCC	alt_3975_RC	3	13	4	7	16	6	19	7	17	3
ATTGGTATCAAAAGCC	alt_3975_RC	9	5	7	9	2	12	3	10	6	12
CAAGGATTTTTTATCA	alt_3975_RC	38	32	65	45	28	33	26	43	26	26
CTTAATTACACGATGG	alt_3975_RC	9	9	20	17	6	8	9	11	8	19
TGCGTTCTAGCATGTA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
ACGTGTTTCGCTGGGC	alt_3975_RC	58	39	59	57	51	51	49	48	45	43
CCATTGCAAGCAGACT	alt_3975_RC	30	21	52	41	18	32	27	34	13	38
GGCAGTCTTAGGAGTG	alt_3975_RC	29	22	39	24	16	29	23	24	31	32
CACTGCTGTCACTCAT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GAAGTTCGTAGTACCG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GAACCTAGGATGAGTG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CGTGTTCGGCTAGTAC	alt_3975_RC	16	13	12	10	4	9	4	9	1	6
CTAGTACATGGACTTT	alt_3975_RC	15	13	16	16	11	9	12	14	10	5
TTCTATCTAGGCTTGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GTTGGAGCGTGTGTTA	alt_3975_RC	26	21	49	35	22	29	17	26	35	36
CGTGACTCATTAAACT	alt_3975_RC	47	32	75	57	31	46	24	42	24	41
GCAACAGTTGGCGTCG	alt_3975_RC	55	29	83	64	24	44	33	47	33	39
TCATTATCGATTAGTG	alt_3975_RC	14	9	23	20	6	19	12	21	16	12
TGACGGGCTTGGCGGC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GCATCGCCTCTTTTCG	alt_3975_RC	1	0	0	1	0	0	1	0	0	0
CAATTAATGCGTATGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GGGGCGTGCGGACCCC	alt_3975_RC	93	53	87	92	56	87	45	58	46	82
TTTCGTTTGTGACCTT	alt_3975_RC	26	12	10	21	10	14	9	12	14	16
GGCTCTCCCCGGGTTT	alt_3975_RC	17	57	22	23	66	15	43	20	45	18
CCAGGCTCTGATCAGG	alt_3975_RC	50	25	48	45	32	33	27	34	34	40
CACCTACTGGCATTTT	alt_3975_RC	10	13	19	20	10	26	13	19	18	8
ATGTTAATCCCCGCTT	alt_3975_RC	29	30	25	21	21	20	25	17	27	28
GGGCGCGTTGGGTGAT	alt_3975_RC	11	6	9	10	7	15	12	17	4	12
TATGTTATTCCTGTAC	alt_3975_RC	90	68	107	98	59	73	77	90	71	80
CAATATTACCGCATCG	alt_3975_RC	20	22	33	37	26	27	25	31	32	29
GCTCATAATTTCACTG	alt_3975_RC	60	49	68	101	56	54	48	63	48	52
TGCCATTGTTAACTTC	alt_3975_RC	0	0	6	0	0	2	2	0	2	1
AGCTATATGTTTATTA	alt_3975_RC	136	96	205	192	94	152	93	190	87	164
CACGTGTTCGTAGTGT	alt_3975_RC	195	234	233	196	278	190	274	192	283	188
ATTTTTATGCTGGCTA	alt_3975_RC	13	13	8	12	8	6	5	12	6	16
ATCCATTTGCCGGGAA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTGCTTTGTCAGAATG	alt_3975_RC	35	23	55	30	32	33	26	29	17	21
GCATTAGTCAGACTGT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTAGGCCCCCTTCTAA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CCCGGCTTGAACAGTA	alt_3975_RC	6	6	8	0	5	5	7	8	5	2
ATCGGGCATTCCGCCA	alt_3975_RC	65	31	70	62	34	61	59	51	29	46
TTTTTTCTGAACTTGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTGTGATTTCTTTTCC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
ATTTTCGGAATGGCCT	alt_3975_RC	21	15	26	18	19	13	8	25	10	27
CGTCGCGGTGCTGTGG	alt_3975_RC	11	3	8	4	2	6	4	2	3	6
CTACGGCCTTTTTACG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GGAGCCGTTTTGAGTC	ref_3975_RC	124	39	173	164	31	123	32	124	32	118
GTCTTTTTCCGCGCCG	alt_3975_RC	17	7	14	15	10	13	7	9	12	13
GAAGTTTTAAGAATTC	alt_3975_RC	30	20	37	25	28	36	31	15	35	25
GTACACACTTGAGGGA	alt_3975_RC	4	7	6	17	6	10	6	8	2	7
CCGTCTGTTGTTGCCG	alt_3975_RC	22	27	31	22	27	22	26	25	40	9
TTCGCTCGGTTTTTGA	alt_3975_RC	66	46	86	60	51	75	56	74	52	63
CCCGTTTTGTATCTAA	alt_3975_RC	34	59	48	33	65	48	69	40	53	43
ATCGGTCAGGGCAATG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TCATAAGTGATCTAGT	alt_3975_RC	9	10	29	13	12	10	8	17	8	11
CTGCCTTTCTGTTTAA	alt_3975_RC	10	4	11	11	7	8	6	6	9	13
GTGTATTCTCATCCCG	alt_3975_RC	32	42	59	47	20	45	41	44	35	40
ATTCACTAGATATAAC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
ATCCGCGACTGTCCAG	alt_3975_RC	1	1	1	4	2	0	5	0	5	1
TTAAGGGGGTACATTT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GGGGAAAATTCATAAC	alt_3975_RC	18	14	33	34	24	24	24	34	17	19
CCACGGTCCACTTCAT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTGTGTGTCGTGCCCG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GCTCGAGCCCTGGACC	alt_3975_RC	47	36	57	56	55	53	29	39	51	47
ATGAAGCTCACATATT	alt_3975_RC	0	0	1	0	4	0	0	1	1	1
CAATAGTATGAGGCGT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CTATGGATTAAGTTAT	alt_3975_RC	2	1	0	6	1	3	7	3	0	1
GCTGCAGAATACGGCG	alt_3975_RC	33	23	40	30	21	30	18	36	20	33
CATTTTTCCTTCTTTC	alt_3975_RC	62	58	96	81	46	61	36	57	48	55
AGGCAGGGATTCTAAG	alt_3975_RC	26	19	25	27	28	26	15	23	21	17
TAAAATTCACTCAGCG	alt_3975_RC	22	24	31	27	16	26	16	22	20	23
CGCTCGCTCTCTGGCA	alt_3975_RC	31	16	44	28	28	50	30	31	30	38
TTGGACGGCCGTATTA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TCAACTTGTCTGCTGA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CACTATTGACGATTCC	alt_3975_RC	5	6	9	17	3	4	4	4	6	6
TGTCGGATAACTGGTG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTGTTACTGCAGTTGC	alt_3975_RC	10	6	12	7	5	11	6	6	5	6
ATAGTAAACGCATTGA	ref_3975_RC	100	30	127	127	26	92	28	129	24	104
GTACTGTGAACCTGGG	alt_3975_RC	124	75	153	165	119	117	117	111	88	116
TATTAACAATGGTTAA	alt_3975_RC	32	16	17	20	9	17	15	17	23	21
TCATTTACTTCTGTGT	alt_3975_RC	122	91	151	145	71	112	80	116	93	127
TTTCTACGTCCAGGTC	alt_3975_RC	23	14	14	17	17	10	13	11	8	16
TGACCAAGGTAGAACG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
ATTTGGACTCTTAGCA	alt_3975_RC	31	14	40	23	38	21	16	22	26	30
CATTTCTCTAGGGTCT	alt_3975_RC	34	10	46	34	21	41	16	36	37	27
TTATGCGTTTCGCGCA	alt_3975_RC	49	42	78	56	36	49	37	52	42	54
GTTTACTTACTGGCGA	alt_3975_RC	1	0	5	1	3	0	0	2	1	3
TCCGCAGGGACGGCGA	alt_3975_RC	11	6	13	11	1	6	9	13	8	8
GGGGTAAGTAAACTTG	alt_3975_RC	124	82	118	99	69	107	60	85	75	75
GTTTAGATGTGCAGTC	alt_3975_RC	188	164	310	231	155	218	158	198	171	176
TTCATCATGCTAGTGA	alt_3975_RC	238	201	340	304	187	226	181	248	196	220
TATAATCCCGCAACGG	alt_3975_RC	85	56	111	88	57	90	57	81	55	63
CGGATAACAGTTCAAA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
GCCAACAGCTGCGTGT	alt_3975_RC	17	11	25	21	23	15	10	33	13	11
CCGTGAAGACCCGTTG	alt_3975_RC	6	5	6	3	9	9	2	10	6	8
TGTCAGTTTTTTCGAT	alt_3975_RC	48	34	54	45	36	48	27	42	35	44
GTTGTCGGTAACTCGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
AAGAAACACATTCGCA	alt_3975_RC	66	37	83	74	32	64	44	60	57	52
TTATTGGATCGCCTCT	alt_3975_RC	12	7	16	11	2	7	5	9	6	11
TGCATAGAAGCCTTTG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TTCCGTTATATCAACG	alt_3975_RC	18	26	27	21	19	26	21	13	22	24
CTGGAAGTCTGTTTTT	alt_3975_RC	7	7	13	12	6	5	6	7	10	7
ACTTTTCCGGTATTGG	alt_3975_RC	22	20	31	33	11	22	5	13	29	20
TTCATGTGGTTATATT	alt_3975_RC	51	42	70	65	42	64	58	60	45	60
CGCTTTATTGCTAGCC	alt_3975_RC	61	34	67	73	37	58	42	49	52	49
CTAGGAAACTGCGTGC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CAATTGAACTTTGACG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TCTCTCGGGTCACAGG	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TAGCATTATGGCTGGC	alt_3975_RC	26	13	42	32	19	22	23	25	20	21
TGATATTTCTGGAGAT	ref_3975_RC	118	86	129	128	99	108	83	91	112	95
TGTTTTGTTTTGTTCT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
AAATTAAAGCTCCGTT	alt_3975_RC	10	12	25	10	7	19	10	19	11	12
TCTCTGGAGACCCGTA	alt_3975_RC	205	120	243	182	118	184	103	205	127	186
TACGATGATCCCCTCC	alt_3975_RC	1	0	2	1	0	2	0	1	0	0
TCTGGCATGTCGGGGG	alt_3975_RC	50	35	92	62	27	55	37	56	34	52
GAGCAGAAAGCGATGA	alt_3975_RC	100	59	108	90	44	85	68	85	44	69
TACTATTCGCCAGTCT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TCCACGTTCTTCTAGC	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
TGTATGTTGGTTCTCA	alt_3975_RC	8	8	15	14	15	13	9	17	19	14
TATTGCTTTTCCACGA	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CTGCCATCTCGTCTGG	alt_3975_RC	5	19	16	11	20	16	17	11	14	13
TGTACTCGGGGGGTTT	alt_3975_RC	0	0	0	0	0	0	0	0	0	0
CGCGGCACCCCTGCTG	alt_3975_RC	21	12	24	27	13	12	16	26	22	26
ATAGGATGGCGGGGTG	alt_3975_RC	108	66	114	97	56	86	50	87	65	77
TGGTATCTATACCGTT	alt_3975_RC	262	168	287	260	217	238	180	264	217	207
GTGTCAGCCACCATTA	alt_5717_new	19	37	39	28	39	25	33	14	26	21
ACTCGCGCCAGAAAAT	alt_5717_new	56	82	58	51	80	41	74	56	68	44
ATGGCGCGGTTGGCCA	alt_5717_new	5	7	8	2	8	4	7	4	11	6
CGAGTTGCGTGCTCTG	alt_5717_new	0	0	0	0	0	0	0	0	0	0
GTGTTTTGGGTGCTTG	ref_5717_new	35	66	46	36	75	31	55	33	70	33
CTAGAGCGTTTATACC	alt_5717_new	152	270	226	143	258	138	276	153	287	130
ATCCATACAGATATAA	alt_5717_new	0	0	0	0	0	0	0	0	0	0
CCGGATAGCCCCCCCA	alt_5717_new	0	0	0	0	0	0	0	0	0	0
AACAGGTGGGTTCATG	alt_5717_new	8	25	17	18	24	11	25	11	21	5
CAGTTGTTTCTAAACG	alt_5717_new	23	49	19	25	59	38	57	32	43	30
GAACCTCGTCAATGTC	alt_5717_new	28	36	27	27	37	40	37	34	36	17
TATTTTGAACCAATTG	alt_5717_new	0	0	0	0	0	0	0	0	0	0
AACAATCCGAAATTCT	alt_5717_new	9	7	9	12	12	8	5	7	8	4
GACACTTGCATAGGTT	alt_5717_new	58	53	64	56	57	46	75	47	68	63
ATACCCGGGCAATTGA	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TCTTGCCGTCCATTCT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
ACGCCGACACTCATAA	alt_5717_new	5	9	4	7	11	10	8	6	14	7
ATTCAGATTATGGAGC	ref_5717_new	0	0	0	0	0	0	0	0	0	0
TTTGTTAGCGCTGGGT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
ATTCATATTCTGGCGT	alt_5717_new	39	39	43	48	59	31	56	47	61	39
GACGAGGCCGTTAATT	alt_5717_new	29	40	28	24	34	23	42	18	14	18
CGTGAAAAGCATGGTT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TGTCATAGGTGAGCGC	alt_5717_new	3	8	5	3	3	6	8	4	5	4
CCGGATAGACCCCCCA	ref_5717_new	115	156	166	131	123	106	141	136	165	90
CCAGAAATCTGTCTGA	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TTGGGTCAGGTGGCAT	alt_5717_new	11	10	13	3	12	6	10	1	13	8
GTTATGTTCCAGGGCC	alt_5717_new	1	1	2	3	4	1	3	5	4	1
GGCTAACGGACATAAT	alt_5717_new	26	26	34	33	22	17	31	24	17	25
TATACCCTTGCAGGAT	ref_5717_new	82	110	90	106	136	95	142	88	148	70
ACAGGGGTTCCGCCTC	alt_5717_new	0	0	0	0	0	0	0	0	0	0
CGGTCCCTCCTAGTAG	alt_5717_new	76	98	72	73	108	75	100	64	131	58
ATCCACTTCGATGATA	alt_5717_new	1	3	2	2	2	1	3	0	2	4
CGTCTATGTTCAGCTT	alt_5717_new	19	20	22	19	39	29	30	16	36	24
ATGGTTTTGTTTGGTG	alt_5717_new	25	31	24	28	21	17	24	32	35	26
ACACGTTATGCATTGT	alt_5717_new	26	31	34	33	18	23	30	21	46	33
TACTATTCACATTCCT	alt_5717_new	56	90	71	73	81	62	132	53	95	57
GTTCTGGGATTACAGG	alt_5717_new	71	98	102	87	113	74	116	84	110	64
ATATTGTTGCTATCCG	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TAAGTTGTGTACCCTA	alt_5717_new	0	5	2	1	2	2	1	2	9	3
TGTTCTCTTTCCCGAC	alt_5717_new	16	12	14	12	24	14	32	5	20	10
ATGCCGTGGTCGCTCG	alt_5717_new	10	19	18	14	22	12	11	5	19	10
GCATGGCTTCTTCCTA	alt_5717_new	5	14	3	5	5	2	16	10	11	3
CATTTACCGCGCATGC	alt_5717_new	3	13	8	8	10	4	8	7	5	14
TATTTCGTAGGGCGAG	alt_5717_new	58	71	71	62	94	48	67	65	81	49
CCCATCTGGTTTTCCA	alt_5717_new	7	13	10	7	23	9	18	4	15	5
TAGTTTGTGTCCGCCT	alt_5717_new	1	8	2	2	1	4	2	0	8	1
GGGACCGCACCCGAGG	alt_5717_new	22	16	14	11	21	11	17	16	9	20
AATAAGATATACGCGA	alt_5717_new	15	16	8	11	9	12	17	16	19	5
GGCATAGGGTAATCTG	alt_5717_new	59	73	78	46	63	50	84	57	64	64
ATAGCATCGTCCCTGG	alt_5717_new	5	15	13	10	3	12	8	8	14	8
GGTTCGAGGTCTCTCT	alt_5717_new	22	25	20	11	21	22	30	27	32	18
GGCTGGATTAACAGGA	alt_5717_new	7	9	7	2	12	5	8	7	11	5
CTTTGTTCGTTGGTAC	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TCACCAAGTTTCCAGG	alt_5717_new	8	31	28	22	27	27	27	21	21	14
ACATCTACGACGGAAT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TTCCCCTCCCGTATCC	alt_5717_new	5	10	15	7	16	4	13	6	6	9
CACACGTCCGTACGTA	alt_5717_new	37	56	39	33	57	31	58	38	55	38
TCGCTGTTTGCCTCGT	alt_5717_new	11	13	8	11	18	5	11	11	10	3
CACCGGAATTCAGATA	alt_5717_new	22	32	37	19	36	20	21	18	26	25
TTTAGCCCACTTATTC	alt_5717_new	0	0	0	0	0	0	0	0	0	0
AACTCAGGATTGACCT	alt_5717_new	67	137	137	81	128	78	144	94	142	82
TGCGCATTGTGGCTTC	alt_5717_new	63	48	71	55	52	60	57	52	74	43
CTTGCCAGACATATTT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
CAATAGATTGTATATG	alt_5717_new	51	70	69	58	63	42	94	39	106	41
CCGCTGGAAACCTACA	alt_5717_new	9	29	10	15	33	19	28	13	24	10
TGCTCTGAATTTCCTT	alt_5717_new	30	52	38	30	55	46	38	40	54	31
CGCGGCACTGTTTTCG	alt_5717_new	16	19	14	18	29	17	14	15	23	16
CTCAGGCGCGCTCTTA	alt_5717_new	22	18	23	11	16	22	18	16	17	10
TGGCGTGCGGGCGCAT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TTTGGGATAATTGTTT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
CTAAAACAGTGGCGCT	alt_5717_new	19	18	27	27	35	21	39	11	27	19
TGCTGCGTGTAGTTCT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
ATAACTCGAAACCTAT	alt_5717_new	0	0	0	0	0	0	0	0	0	0
CCTCTCATACATGTTC	alt_5717_new	0	0	0	0	0	0	0	0	0	0
TCCATACTCATAACTT	alt_5717_new	63	94	73	80	90	73	101	73	96	64
TGGTCATCGGTCATGC	alt_5717_new	38	73	38	38	63	28	61	31	77	32
TTACCCCGTGTTCCCT	alt_5717_new	14	35	27	16	28	19	34	17	35	15
CGCTGGTGTCTCAACA	alt_5717_new	91	129	98	90	94	80	132	72	130	94
AACTTAGCTCCGCGCT	alt_5717_new	64	94	101	96	110	72	100	82	99	69
GTGACTTTATTATTTT	alt_5717_new	16	17	10	11	9	11	12	15	7	11
CCGCAATTAGGGTATT	alt_5717_new	61	66	53	54	57	63	76	54	60	44
CACGGTCCGGCGGCCT	alt_5717_new	10	23	11	6	15	15	18	8	23	8
TAGTCGTTTTTAACAG	alt_5717_new	0	0	0	0	0	0	0	0	0	0
AGGACGACTGACATTT	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
TATTCGTTCTCTAGTT	ref_2349_fdr	8	10	14	8	22	4	6	9	5	5
GTGTACTGTTGCCCTC	ref_2349_fdr	34	29	31	26	27	28	26	12	32	25
TCTTAGGCTCGACCGA	ref_2349_fdr	17	31	19	11	28	13	39	22	31	9
CCGTAACAGAACTCAA	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
TACTGCATGCCAAATC	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCATTTTCTGTG	ref_2349_fdr	9	33	12	13	21	10	23	4	35	9
CCTAGCAATGCTATTC	ref_2349_fdr	87	139	113	109	130	79	165	80	136	65
CTCTCAGTCAATCGAT	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
CAGGCCCTGTTGTGCA	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
CATGAAGTTTGCACGT	ref_2349_fdr	33	42	45	39	46	40	53	44	53	27
TAGCTTTTGCAGTCGT	ref_2349_fdr	1	1	0	0	0	1	0	1	0	3
ATTCATGGGGTAACGC	ref_2349_fdr	6	5	10	6	6	4	6	4	8	7
CTCTATTTGTTGTTTC	ref_2349_fdr	135	101	168	135	140	123	126	139	132	111
CAGGTTGTGAAGCGCG	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCGCTGATTCGGC	ref_2349_fdr	90	86	68	77	84	79	76	50	87	54
TTGCTGCGTGCCTCAA	ref_2349_fdr	26	34	35	26	32	18	28	17	36	21
TAAAACCACGGAGGTT	ref_2349_fdr	11	22	17	24	16	16	28	17	24	14
TCTTTGGTGTCACACG	ref_2349_fdr	45	67	54	57	40	39	54	53	61	50
TACACCAGTGTAGGCC	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
TACTGCATGCCACATC	ref_2349_fdr	11	15	15	10	13	6	13	16	12	9
AAGAAAGGTCCGCCTT	ref_2349_fdr	17	11	20	14	11	11	8	11	17	12
GTGGTCCAATCACGAT	ref_2349_fdr	26	25	34	27	28	35	51	26	39	31
AATTATTGCTCATAAA	ref_2349_fdr	51	65	66	46	62	53	81	44	75	65
TTTCTCTGGGGCTGTT	ref_2349_fdr	44	70	47	39	63	24	56	35	62	43
CTTATAGGCCTCTACC	ref_2349_fdr	10	14	8	17	17	22	21	12	11	12
TGTGTGGTGGGTGTTA	ref_2349_fdr	1	5	3	1	7	4	3	0	9	2
TGTTTATCGCCCGCTA	ref_2349_fdr	34	26	28	23	20	29	21	16	29	30
TTACTTGGCACCCCTC	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGAAGGTCATGAT	ref_2349_fdr	121	116	144	114	153	97	158	93	128	96
GGCAAATAGGGCTTCT	ref_2349_fdr	57	52	57	44	76	55	64	45	75	41
CTGAGAGCGGATTGAG	ref_2349_fdr	17	21	18	21	23	15	27	31	25	15
GCGCATGTTCTCTATC	ref_2349_fdr	11	6	8	6	23	5	9	10	7	8
TTAGTCAACCACAGAT	ref_2349_fdr	57	80	77	66	62	63	83	68	80	68
ATACCTTCCAAAATTC	ref_2349_fdr	6	7	14	11	15	5	16	4	13	12
AATCGCTTTTCGGCCG	ref_2349_fdr	16	21	16	17	8	12	14	14	21	16
CCTCACATTAGGGGCG	ref_2349_fdr	41	56	26	29	67	28	38	29	62	26
TGACCTAGTCAACTTC	ref_2349_fdr	8	17	5	8	15	5	15	4	10	10
TGGATCTAGGTCTGGA	ref_2349_fdr	40	33	34	32	29	27	29	36	40	20
TGTTAGGTGTCTTCGA	ref_2349_fdr	23	24	28	36	32	23	30	25	45	18
TTTTTTTGGGATTGTT	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGTTTTGTGCACT	ref_2349_fdr	51	52	40	39	52	42	57	51	56	30
GGAGGTCCCACGGATA	ref_2349_fdr	17	28	27	15	24	18	23	23	25	11
TCGGCCTTAATCTTTT	ref_2349_fdr	9	34	12	13	16	8	20	12	17	6
TACGGCCGGTGGAGGT	ref_2349_fdr	27	32	30	40	32	23	44	23	38	23
TTTTTTTTGGGATTGT	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTCCAGGTCTGGA	ref_2349_fdr	0	0	0	0	0	0	0	0	0	0
CAGCCTGACTACACAC	ref_2349_fdr	0	0	0	0	3	0	0	0	0	0
TCTCGTTAACACTCAG	ref_2349_fdr	20	41	39	20	31	25	37	25	32	18
AGATGCGACACGTAGT	ref_2349_fdr	8	9	8	10	6	8	12	7	9	7
TGAGTGGGTGGGTCCA	ref_2349_fdr	8	17	13	8	11	10	15	10	13	8
GAGTTCCCGTGCCGCC	ref_2349_fdr	25	28	27	20	32	21	34	23	22	20
ACATTCACGGTTACTC	ref_2349_fdr	7	2	5	2	3	1	4	1	4	2
TGCCCGGTCTACCGTT	ref_2349_fdr	10	20	15	14	26	17	14	5	17	9
CTACCAGCTACTTTTG	ref_2029_reverse	11	23	26	13	20	7	20	13	25	6
CTGGTATCTATCTCTT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTGGCGTCTTTTC	ref_2029_reverse	136	221	168	122	221	151	232	152	256	128
TACTGCTCAGATCAGG	ref_2029_reverse	25	33	32	27	43	20	65	15	60	27
CCTATAATATGTTCTC	ref_2029_reverse	0	4	1	2	1	0	2	0	4	0
TTACACGGATGTGCCT	ref_2029_reverse	7	51	22	17	42	16	57	13	49	13
CGGTTCCGCCAGTAAT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGGTCAAGGATTT	ref_2029_reverse	7	13	13	10	19	7	15	12	33	4
AGACAAATTAAGTACT	ref_2029_reverse	81	89	82	87	93	89	93	66	78	69
TTTTGTCTCCATAGGT	ref_2029_reverse	7	13	8	11	17	5	13	4	11	4
CTCACGGGTATTTGCC	ref_2029_reverse	1	3	0	0	6	0	4	1	6	2
CGCGGCCTTGTTCACG	ref_2029_reverse	7	5	5	5	12	1	7	2	14	2
GGCGCGCAGTGGTAGT	ref_2029_reverse	14	34	24	23	30	28	26	26	31	15
CGCTGTATTGCGCGCC	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
ATATCTCTCACAACAA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
AAACACAAGGTTACCA	ref_2029_reverse	24	38	25	18	33	34	46	19	47	23
GCCGATAAGCCACCCG	ref_2029_reverse	1	9	4	4	7	3	6	3	11	0
CAACTACTTGGATTGC	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCGGCAGTAAAAC	ref_2029_reverse	27	52	37	31	69	32	56	31	86	20
GTCCTACGTATTAAAT	ref_2029_reverse	10	28	14	20	24	19	30	13	15	7
GCTCAGGCTTGCAAGC	ref_2029_reverse	1	1	4	5	5	2	2	5	6	2
ATTATAACATATGGCT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTCTCTACGGTAT	ref_2029_reverse	3	23	5	3	17	8	10	6	20	12
CATCCCGTGATCTTGC	ref_2029_reverse	14	42	16	18	40	15	43	11	48	20
TGCTCACCATATCGTC	ref_2029_reverse	4	9	10	5	24	4	19	4	16	7
TGTACCGCGTATACGA	ref_2029_reverse	32	51	57	32	58	30	50	23	72	26
ATATCGCAGAACATGT	ref_2029_reverse	23	43	51	33	68	40	60	38	60	34
TTTTGATATGTTACAT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCCGATCATCCGAGGG	ref_2029_reverse	5	14	6	3	4	3	9	1	19	2
GTCTTTGTTAATTCCC	ref_2029_reverse	2	16	7	9	12	9	24	5	14	3
TCGGTCGTATTCCTGT	ref_2029_reverse	10	17	14	6	4	10	11	4	14	11
AAATGTGCCACTTTGC	ref_2029_reverse	16	28	21	25	39	18	54	9	38	16
GGCTTACGGTTCTCTT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TCCATACCTGGCAATC	ref_2029_reverse	16	41	13	11	51	12	27	16	26	8
TATTTGCGGGTTGTTG	ref_2029_reverse	34	56	37	38	64	31	64	25	71	29
CTCATTTGTATCAGCG	ref_2029_reverse	13	25	11	11	21	15	26	11	19	8
TATGATAGGTGCTCTT	ref_2029_reverse	16	40	15	9	37	8	30	19	34	14
AGTCTTCGGGCTTCTA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTTACGTTTAATC	ref_2029_reverse	15	29	20	11	19	13	30	16	30	13
CTTGCGCGCATGGGTA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCGGCCGGAAGGT	ref_2029_reverse	5	16	3	4	15	2	12	2	12	8
AGTATTCGGAATCATT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCTGAGTCAGTAT	ref_2029_reverse	1	1	0	1	2	1	5	2	4	0
ACGGCCAAGCTGAACT	ref_2029_reverse	46	75	61	49	57	41	76	35	80	38
TCGACGAAGTTACCAC	ref_2029_reverse	24	47	30	31	46	25	50	30	63	28
GATATCTAACTTACGT	ref_2029_reverse	26	55	27	29	63	36	61	24	57	28
GACCTCGGCAACTTTT	ref_2029_reverse	1	4	4	3	3	1	11	5	2	2
CCTTGGTCCGCTAATT	ref_2029_reverse	7	9	3	0	10	2	9	5	11	3
TGCCCTCTCACATCGG	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAGTTACAACATA	ref_2029_reverse	21	44	35	25	41	20	37	39	65	23
CGACTCCGAGTGGCTG	ref_2029_reverse	2	5	5	3	11	5	5	6	7	5
CGTATTTATGAAATGT	ref_2029_reverse	12	35	34	19	30	15	53	17	30	11
GAGCCTGTTCGTTTGT	ref_2029_reverse	12	15	9	9	19	17	32	13	24	11
ACGGGTGACGTTGTTG	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTGTGTACGGAGC	ref_2029_reverse	17	43	22	37	36	21	41	25	43	21
TCATATCGGCTGATCT	ref_2029_reverse	12	16	18	11	15	14	16	15	15	9
ACATTAACGAAACGTT	ref_2029_reverse	9	17	3	14	25	7	8	8	18	6
CTTGGTGTTTCGTTTC	ref_2029_reverse	15	18	12	14	16	12	28	15	27	12
GTCTGTATCGATCATA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
CAATATGTGATTAGCT	ref_2029_reverse	2	2	4	1	4	0	4	0	6	1
GGGCAAATTGGTATTC	ref_2029_reverse	36	60	43	36	54	39	68	40	89	33
CCCTTGCAGAGCGCCT	ref_2029_reverse	37	66	43	40	60	35	73	33	81	39
CAGGTGCCAATACTGT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TACCTTGGTCTACTTC	ref_2029_reverse	21	52	23	21	50	23	53	26	48	22
TCCTGTATCAGGTGGC	ref_2029_reverse	10	13	14	8	19	13	16	6	25	4
GCAACTACAACCAGAC	ref_2029_reverse	84	31	101	98	36	79	41	82	46	84
ATCTTTATTTGAAATC	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
ACGACCGTTCGCAGAA	ref_2029_reverse	1	1	3	1	8	1	5	0	5	1
TTAGCGTCTCCTACTG	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTATGCGTGTCTA	ref_2029_reverse	23	65	42	33	64	27	64	28	65	30
GCTGTTATTGCGATGG	ref_2029_reverse	16	17	20	8	19	13	18	15	33	18
TGAGTTCGGATTTAGT	ref_2029_reverse	8	17	12	13	13	15	26	15	23	13
ATTTAGTTTGAACCCG	ref_2029_reverse	7	13	10	14	12	8	16	9	16	6
GGCGTTCGTGTCTCGG	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCTACAGTCATAG	ref_2029_reverse	33	62	33	31	75	25	56	19	78	18
CATTTGTGGTTTACGC	ref_2029_reverse	18	47	23	23	44	23	52	23	51	23
ATTGATCGCTTGCAGT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
AATACGTACATTTTAT	ref_2029_reverse	22	64	49	28	71	41	62	43	48	31
GTCACCTAGTGAAGCA	ref_2029_reverse	18	44	23	14	36	6	36	12	38	13
TAGTCAGTAAATTTTC	ref_2029_reverse	17	26	20	9	33	13	36	20	41	15
TGCCTATCGTTTAGTT	ref_2029_reverse	2	13	3	3	8	0	5	1	6	3
ACTATATTACAGCTAT	ref_2029_reverse	0	6	4	7	8	3	1	2	4	3
AGAGAAAAATAGAAAT	ref_2029_reverse	23	57	45	34	39	23	42	28	34	23
GCTCGCCCTCTCCAGT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCTGTCCCCCTGA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TGAGAGATATGTCTTA	ref_2029_reverse	11	17	7	4	19	6	21	9	17	5
ATACTTTTCTGATAGT	ref_2029_reverse	87	146	99	74	141	90	152	82	152	54
GTCTTAACACTGTATC	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
CCATGCGGATGTGAGT	ref_2029_reverse	0	3	2	3	2	0	3	3	5	2
ATCTGGATGTAACAAT	ref_2029_reverse	28	64	56	48	94	34	100	33	74	35
GATTTCATCTGAGTTG	ref_2029_reverse	6	22	10	13	20	7	20	8	24	17
TCTTTCTCTTGCGCTC	ref_2029_reverse	13	26	16	18	17	19	25	16	17	11
CAAAGATACTTTATCG	ref_2029_reverse	19	37	13	15	37	15	46	20	41	18
CACCATCTAGTTTCTC	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
AGTGGTTGAGTCCTCT	ref_2029_reverse	1	0	3	0	1	2	6	1	0	2
CATAGGCCTATAGTGA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
CGTGATAGTCGGTATT	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
GATGGTTAATATGTTT	ref_2029_reverse	15	33	11	12	35	13	34	13	17	8
CGCGCTCCTCTGCCCC	ref_2029_reverse	15	19	12	6	27	9	23	9	24	10
CACCGTCTGACTATTT	ref_2029_reverse	4	40	10	7	39	10	47	4	59	4
GGCTGATAGTATATTA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
CGAGATTCTACGGAAA	ref_2029_reverse	8	29	13	8	31	14	23	12	29	13
CTGGTCATAACCTAGG	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
AACCAGTTGAAGAGTC	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TGACAGCCACCCTTAG	ref_2029_reverse	19	69	24	22	53	27	59	19	61	21
CTGGTTAATGATCCAA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCGACGAGACACA	ref_2029_reverse	0	0	0	0	0	0	0	0	0	0
TATCAGTTTAAGTTCC	ref_2029_reverse	8	26	12	9	40	9	25	12	26	16
CGCTGTTTCCCTTTAT	ref_2029_reverse	6	19	9	13	19	18	18	17	9	6
AGGTTATTCGAATCCA	ref_2029_reverse	35	64	37	33	58	33	66	39	68	24
TCTTTCTCATTGACCG	alt_904_reverse	3	9	12	2	12	5	16	7	10	0
TTAGTAGACCTCGACC	alt_904_reverse	44	65	68	29	49	41	64	37	82	38
AACATTCGCTAGTGGT	alt_904_reverse	319	407	353	316	467	303	416	282	446	303
ACGGCATAAGTCCTGA	alt_904_reverse	11	18	21	16	6	19	27	15	13	12
TCGCGCTCTTCCCCTT	alt_904_reverse	3	3	2	2	2	3	0	3	0	1
ACGTCTTTAATTGGTT	alt_904_reverse	13	21	19	14	19	18	28	25	31	14
TCAAAACGGTTCCGGT	alt_904_reverse	39	32	29	22	38	31	29	30	39	25
GCGTTCGCTAGCCTTG	alt_904_reverse	20	28	31	11	20	17	24	23	27	11
CACCTATACTTTGCCT	alt_904_reverse	21	59	41	43	44	27	46	26	51	28
TCGGGCCGCATATGAT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ACCTAGGGTGATATAG	alt_904_reverse	8	7	18	8	7	7	4	7	7	4
CTCGTAGTGTTTGTGC	alt_904_reverse	5	9	5	2	17	4	14	8	23	7
TCCAATTACTTAACCT	alt_904_reverse	5	13	13	5	11	9	9	8	13	10
GATTTCTTTGTCGGAC	alt_904_reverse	26	24	52	23	25	24	29	20	25	22
TTCCGTATCTAATCTA	alt_904_reverse	3	9	8	6	7	4	5	1	9	4
GATTAATCCTCCTTCG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCATTTAATGCTC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTGTTGCTCGACT	alt_904_reverse	0	0	0	0	0	0	1	1	0	1
CTTTTACCAATAACTG	alt_904_reverse	6	10	16	11	9	4	13	6	14	12
ACACAGCTGCGGGGCG	alt_904_reverse	49	46	44	36	41	48	59	38	60	46
GAACAATTCTTCTGAG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTTGTTGGAACGT	alt_904_reverse	15	25	14	22	22	19	37	6	19	14
AGCCAAGTTCCCTATG	alt_904_reverse	52	83	50	50	80	47	70	51	86	55
ATGCTTGGTCTTAGTG	alt_904_reverse	23	40	19	15	39	13	26	15	43	13
CTGGCGAATCACGTCG	alt_904_reverse	54	76	52	53	75	40	66	56	67	36
TGATGCGGCATCAGAT	alt_904_reverse	20	31	35	21	30	15	35	19	35	32
TAGCGGGGTTCGGAGT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CTTAAGGGAGGCACTT	alt_904_reverse	11	6	6	8	9	6	8	12	9	7
TCGCAATATCTGACAT	alt_904_reverse	13	16	10	10	23	6	12	17	24	9
TGGCTTATGTATTACA	alt_904_reverse	7	3	3	2	4	6	3	1	7	1
TGCTATTAGGGGACCC	alt_904_reverse	30	37	35	36	37	34	44	22	48	32
CTACTTTGAGATAGAT	alt_904_reverse	15	25	17	14	14	21	17	13	20	5
AGGTCAATTAATGGTT	alt_904_reverse	29	33	28	33	31	14	32	22	34	19
TTTTCAAGGTCCAGAC	alt_904_reverse	49	48	48	53	60	47	52	42	65	47
TCGTTTCGTCCGGTTA	alt_904_reverse	101	150	116	112	134	91	131	94	165	76
AGTATTCATTGCTCCA	alt_904_reverse	8	8	7	3	7	2	16	9	8	10
TATATGGTTTTGGACA	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GGCATGGATATACTAT	alt_904_reverse	18	23	26	20	23	19	25	18	24	9
CTAGGTCACACTGTGG	alt_904_reverse	54	88	83	72	96	57	108	69	120	54
CGGATCCCGTACAAGT	alt_904_reverse	24	25	24	25	34	23	44	23	27	22
CTTCCTATCCTTAGAC	alt_904_reverse	12	8	16	6	14	8	14	6	13	1
TTTTTTGTAAATGGCC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGGGCCCCCATTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAATCAGTGTTCC	alt_904_reverse	14	31	17	9	25	19	21	20	23	12
GAAGGCTTGCTGCCTG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTCCGCTCGCGAC	alt_904_reverse	7	12	14	9	19	7	5	11	16	3
CTGTAGGCACACAGGG	alt_904_reverse	4	7	7	5	6	12	10	5	10	3
TATTCCCCGTCGTCAC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ATATATCGGTTAGCGG	alt_904_reverse	19	30	30	13	36	32	21	18	30	25
GTACTTTTTAGCAGCT	alt_904_reverse	0	3	1	1	3	3	1	1	2	2
TCCATTCTTGCACGTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGGATTGTTTGTG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TCAAACCCTTTATGTT	alt_904_reverse	22	36	27	18	37	26	47	27	34	40
GCACTCCTCCCTTTAC	alt_904_reverse	19	54	31	27	50	26	39	22	49	22
ACATTTAGCATTGTAG	alt_904_reverse	4	5	12	7	4	5	6	6	8	5
CATACGTCTTGGGGGA	alt_904_reverse	31	36	28	23	29	18	41	15	42	17
GTAGATCTACTGGTTG	alt_904_reverse	9	4	13	9	8	9	13	7	15	4
TGGTTTGGGGATTAGG	alt_904_reverse	30	32	32	23	47	30	36	23	55	25
TTTTTTTTGACTGTTG	alt_904_reverse	6	22	17	8	7	12	13	11	12	5
ATATCCGGTCTGGTTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAAATTTTTTTTG	alt_904_reverse	7	7	3	3	4	9	6	7	8	9
TGATCCCCGAGCATGC	alt_904_reverse	12	48	24	17	47	20	52	19	29	26
GTATACAAAATAAGTA	alt_904_reverse	20	26	23	15	33	16	26	19	34	19
CACGACGTTTGTTTTC	alt_904_reverse	72	79	88	69	77	62	89	64	98	79
AGATCCCCCGGAGATT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ACCATCAAAGGAGAGG	alt_904_reverse	22	22	17	17	24	14	24	8	26	14
TATTATCTATTCGTAT	alt_904_reverse	24	22	35	33	31	28	35	19	43	19
GATCACGCTCTTGTAT	alt_904_reverse	30	58	33	44	48	54	60	39	53	25
CTTTCACGGTGTGTTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GCCATTTCTGATGGTG	alt_904_reverse	7	8	9	17	3	10	7	6	12	9
GGCTGTCGAAGGATGC	alt_904_reverse	7	9	10	8	11	7	6	8	13	9
GCCTTCGTTTTCAATT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
AAAATAGCAAACTGAT	alt_904_reverse	26	27	29	23	35	33	28	26	38	28
GCGTGCCGGCACCCTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGGATCGTATCG	alt_904_reverse	67	63	42	52	66	50	78	46	76	46
CCAGCACTAACGACAT	alt_904_reverse	5	13	2	2	10	6	9	5	16	6
CCTATGGGTAATTTCT	alt_904_reverse	2	8	11	5	15	4	13	2	19	4
TGCGACCGGCCATTAA	alt_904_reverse	3	11	6	5	2	1	6	3	8	2
CTTTGTTATACGGCAC	alt_904_reverse	3	11	5	1	6	4	1	0	7	4
GCTTAGTTCTTTGTCC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGTAATGAATGCG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGCTCTACCGTTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGTATTTGTAGCG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ACACGCGCCCGGCGCT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTTGCATTCCCAT	alt_904_reverse	43	55	54	56	63	24	53	39	62	44
CTATACCGCGTACATG	alt_904_reverse	4	16	6	5	7	1	3	5	13	3
TCTAAAATAAGGGCCC	alt_904_reverse	70	82	62	41	77	63	61	49	80	48
TGAGACGATCATGCGT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGTTCACCGTCTT	alt_904_reverse	11	17	8	11	16	11	12	9	21	11
TTCGCCTTGTGCTTGA	alt_904_reverse	1	2	7	7	7	2	3	7	1	1
TGTTACATATATAAAA	alt_904_reverse	41	53	56	39	63	36	61	52	58	28
TTGCGTATTTGCTCAG	alt_904_reverse	10	12	18	3	10	14	16	13	13	13
CTCTCAGCAGATACTG	alt_904_reverse	1	1	1	0	4	1	6	0	4	1
TAAGTCTCTCATTTAT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTGATCGATACAG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTATAAGGAGCT	alt_904_reverse	50	69	63	26	64	38	91	46	77	41
CCGACAAGGTACCCAT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ATATCCAGGGTTAGGC	alt_904_reverse	35	58	46	37	48	30	46	23	69	29
AATTCTGATTACTTAC	alt_904_reverse	13	40	20	18	43	18	45	17	47	9
GCCGGTATGCGTTTAC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGTGGTAACGTCT	alt_904_reverse	18	13	15	17	15	16	18	6	20	19
CTGTACAAACCCATTG	alt_904_reverse	8	19	25	20	23	11	19	15	33	24
AGCTCTCGTCTGGTCA	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TACGAGAGTTGTCAAT	alt_904_reverse	5	11	12	12	15	12	16	3	14	11
CCCTCATTTTTTCGCT	alt_904_reverse	21	17	18	17	23	8	30	16	22	12
CGTGTGTGGATATACT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GAATGGGGTCAGAATG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GTCGAGTCAACCATAT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAGTTTTCTTCAT	alt_904_reverse	20	27	20	17	28	26	35	19	16	15
CAAGGCCCTCTGTTTC	alt_904_reverse	2	2	2	3	1	1	3	2	2	1
CTCAGTGGCAGCCAGG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCTCACGTCATTG	alt_904_reverse	12	5	11	7	12	6	16	12	6	7
CGCCACTGCATACTAC	alt_904_reverse	35	46	34	29	47	34	29	20	56	28
CATGGCATATTTTACG	alt_904_reverse	51	65	88	76	79	72	84	63	72	61
TCATGAGGAGGGACCA	alt_904_reverse	21	21	13	12	29	29	29	19	28	20
ATGAGCAGGATTGTTT	alt_904_reverse	34	39	43	35	45	33	36	34	49	29
TCACTTTGCTTTGACA	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CCTACTCCACACAGGG	alt_904_reverse	11	9	6	8	11	3	11	6	11	7
GCCACGACTGTGTTCC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ACATGATTTGTCCATG	alt_904_reverse	9	16	12	5	11	9	9	5	12	8
CAGTGGCATGGGGGGT	alt_904_reverse	33	71	48	46	61	31	54	31	74	30
TAATCGCCTTTTGCGT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGACAACAAGGCG	alt_904_reverse	28	43	37	30	40	37	50	24	39	48
ATCTAAGCAATTGTTT	alt_904_reverse	7	14	18	10	20	15	20	9	22	11
TCTCATGAACGGTGTG	alt_904_reverse	14	20	18	22	19	11	22	16	20	15
TGTTTAGATATTCAGA	alt_904_reverse	38	21	51	27	17	28	22	21	21	23
TCTCCCTGCACCATTT	alt_904_reverse	54	69	73	47	74	44	90	49	51	37
TGACAACTTGTCATAG	alt_904_reverse	35	43	38	28	47	36	49	29	54	23
GCAAACCGTGATTTCC	alt_904_reverse	44	40	43	40	50	41	59	46	60	41
TGCGTGGGCCTCTCTC	alt_904_reverse	15	15	7	7	9	13	13	8	15	6
ACTACCCTGTTTCAGC	alt_904_reverse	15	12	19	15	22	15	22	12	12	13
TGTCAGTGGTTGATTT	alt_904_reverse	0	0	0	1	0	0	2	0	5	3
TGGCTTCTATCTAGAA	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
AATGCTCCTACTGATT	alt_904_reverse	26	26	38	14	28	30	52	22	36	20
CTGCCTGCGTGTGTAG	alt_904_reverse	22	22	23	15	43	24	41	19	25	21
CTACATTCATATACAC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
ATTTATACTTGATCGT	alt_904_reverse	7	12	12	7	13	11	10	15	11	10
GCGGATTTTTACCTCC	alt_904_reverse	6	9	5	4	7	5	7	4	6	5
AGGGTCTGGGACACTC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TCTATCGCTTTGTTAA	alt_904_reverse	104	146	142	115	154	85	167	90	151	87
GTAGTCAGAGAGAGTA	alt_904_reverse	36	39	20	22	32	24	46	22	45	11
GACGTCTCGCGGAGCT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
AGCGGCTGTATCTTTA	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCAGGCTGCCTGT	alt_904_reverse	6	3	2	1	2	1	6	2	13	2
CATGCGACAAGATATC	alt_904_reverse	5	5	0	1	4	3	5	4	4	4
TGCTCATGGGCTTAAC	alt_904_reverse	8	18	9	8	8	14	16	3	10	7
CCCCTGTTTACGCTCT	alt_904_reverse	301	313	359	312	355	252	326	261	359	264
GGCGTAGTGGCTCATT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CCCAATGATTAGGGGT	alt_904_reverse	16	12	9	16	13	8	16	11	20	12
TCAGTGGTTCGAACTG	alt_904_reverse	9	15	9	12	21	5	6	6	13	6
TCTCACGTCACTCGTT	alt_904_reverse	1	6	7	7	8	3	7	5	5	7
AGGATCCGCGATTCTA	alt_904_reverse	4	5	4	2	2	6	4	2	3	2
ATACCGTCACGGTTAA	alt_904_reverse	33	45	46	43	45	49	47	20	50	39
CCTTTCAAGATATGTC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CATATGAGTCTACGTG	alt_904_reverse	18	19	20	12	26	11	31	10	23	11
TTAAACCGGCAACCGG	alt_904_reverse	16	24	25	21	26	17	23	13	35	13
ACATCGCCCGGACCAG	alt_904_reverse	1	19	1	2	14	0	7	0	10	2
GGCGCCAATTAGTGTA	alt_904_reverse	19	20	16	23	25	15	21	25	20	18
TAATAGAATGCGATAT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTTCTTGCACCGC	alt_904_reverse	0	3	5	1	3	3	3	7	2	1
TCTGGTATTATCGCTG	alt_904_reverse	39	71	35	53	74	33	84	42	67	42
CGAACTAAGTGTGTCC	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TGCAATGTACGAAGTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCGGTTACATCGA	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCAAAGTTGTAGT	alt_904_reverse	21	27	48	25	44	33	31	22	45	19
AGTGACTTAGGTTATT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGGGTTGCTCTAT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTCACATGCACC	alt_904_reverse	6	2	0	2	4	0	4	1	2	4
CGGGGGCATATCAGAC	alt_904_reverse	136	150	151	142	126	113	140	116	151	117
CGAATGCTTAAGCCGT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGGCCACCGCCTT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
GGTCAGGCTACGCACA	alt_904_reverse	21	35	28	26	29	24	15	23	24	22
CTTCGTGTCTTTAGGA	alt_904_reverse	1	2	2	1	2	5	6	1	3	4
CTCCGCTTCCATGGCG	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGTACACGTGTAT	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TGCGAACGTGCCCACC	alt_904_reverse	70	70	98	67	93	83	87	70	99	67
GTATTCCGATAAAATA	alt_904_reverse	1	0	0	0	0	0	0	0	0	0
GTTAGATCAATTTAAA	alt_904_reverse	0	0	0	0	0	0	0	0	0	0
TTCTATACGTTTTGTC	alt_904_reverse	5	9	5	8	9	8	18	3	11	5
CGCTGGTGCGAGTATG	alt_904_reverse	18	4	11	15	5	11	7	17	10	9
ACTTCTTTGTTTGTGT	alt_904_reverse	53	52	65	41	60	50	45	51	44	48
ATGACACCGACAAGCT	alt_904_reverse	5	9	3	3	9	5	5	9	15	5
AACGGCCTTGTTTCTG	alt_904_reverse	8	7	8	4	5	6	7	10	10	4
GCCCAGCGGAATGCCC	alt_904_reverse	42	43	51	36	61	28	58	29	70	33
GTCGTCCTCGGCTAGG	alt_904_reverse	13	14	13	13	14	19	16	17	22	12
GACGATCGATCATACC	alt_904_reverse	8	17	3	4	10	7	14	2	13	7
CACTCTCAATATTTCA	ref_3406_fdr	24	19	28	28	33	17	31	27	35	11
TTCCCTGTTTCTTGCA	ref_3406_fdr	12	9	21	14	8	11	15	9	16	17
GACAGTGCGTCCGTTT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTGTTTGGCCTAC	ref_3406_fdr	37	49	53	41	49	36	37	36	54	29
GTTTTCGCATGCTTGC	ref_3406_fdr	10	6	12	10	4	10	9	6	9	11
TGTGGAGACGTAATAG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTGCCTAGTTTAG	ref_3406_fdr	41	52	47	47	37	36	46	37	49	46
CGTTCACTTTAAGCGT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCGTCTGTTTCAT	ref_3406_fdr	64	63	82	64	66	76	66	66	72	61
TTTACCTGACTTGAGA	ref_3406_fdr	19	25	22	29	21	17	23	13	21	14
TTCCGAAACGCTTATT	ref_3406_fdr	38	44	35	27	42	50	55	31	55	43
TTGTTTATGGCAATAC	ref_3406_fdr	57	55	75	46	54	65	39	60	62	44
TTGAATGAATTTATGT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TATCGTTAACTACCAG	ref_3406_fdr	51	35	68	44	51	33	46	35	44	48
GGTGAAAAATGGTTCA	ref_3406_fdr	16	17	19	14	11	14	14	15	18	11
TTGCATCTCCACACTG	ref_3406_fdr	176	208	233	197	213	172	198	183	209	165
GCGTCTCGGGTTTCTT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCGACCGCTATCA	ref_3406_fdr	2	3	2	1	3	4	1	1	4	1
GCTGTTCTCTTGAACT	ref_3406_fdr	20	29	35	28	25	28	25	21	25	16
AAGATAGTGGAACTCA	ref_3406_fdr	19	28	39	41	40	28	31	31	22	26
GGCAGTAATTGTGACG	ref_3406_fdr	41	83	72	67	49	60	47	47	66	48
TTCTTCACAATATATC	ref_3406_fdr	56	55	70	52	65	52	69	56	66	48
GGGTCGCCGATTCTCG	ref_3406_fdr	191	209	272	235	193	196	205	195	209	182
AACGCGTGACAAGCAG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCAATTCGCTAAA	ref_3406_fdr	41	40	59	41	49	54	42	43	50	46
GAGCATCACGCTATTA	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TCACACTGGCTCTCGT	ref_3406_fdr	50	55	45	41	36	29	36	32	40	22
TATTTTTTATCGTGTA	ref_3406_fdr	26	17	24	19	14	12	12	16	25	18
CGGGACCAGGGTTAAC	ref_3406_fdr	18	30	27	25	33	21	32	13	32	23
AGTGCCTTCGGTGTTT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGTCGAGAAATCG	ref_3406_fdr	174	220	203	183	214	176	216	131	225	175
TCGAGACCGCTTCCTT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTTAATCTTTGA	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CCCCACGTGGATATTT	ref_3406_fdr	8	11	7	7	2	6	3	8	10	6
AACACGTTTGTGGAGG	ref_3406_fdr	31	35	22	25	33	28	22	29	18	20
ACGTGTCCCTCATTGA	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
GGGCATTATTTTCACA	ref_3406_fdr	56	51	69	28	60	49	66	50	80	39
GGGGTCCTTCAGTTAC	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGTTCCGGTAGC	ref_3406_fdr	9	7	12	8	8	8	3	4	14	3
CTTCGACCGATTGGCA	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCTCTATCGTACA	ref_3406_fdr	270	329	373	322	411	244	362	296	382	250
TCCTCAGCAGGATTCC	ref_3406_fdr	31	32	27	26	32	23	26	31	38	21
CGTCGGCCTTACCTCT	ref_3406_fdr	16	31	13	15	43	19	17	23	30	16
CCGTTGCTCAGCGTCC	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTCACGGTACGA	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGTGAAGTTCAGT	ref_3406_fdr	5	33	15	14	32	6	36	7	50	10
CCATCTAGCTGTTAGC	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTGTGGCATCTTA	ref_3406_fdr	7	9	10	9	9	7	5	7	6	6
GCGGAGGCGCTCCTTG	ref_3406_fdr	35	42	56	42	24	43	41	37	40	31
CCTTCAATGGCTGCTC	ref_3406_fdr	16	19	24	21	8	12	18	15	20	15
AATGAGTAGCAGGTAG	ref_3406_fdr	26	17	24	25	24	26	29	20	19	16
GATACGTTTAGTGAGG	ref_3406_fdr	103	100	119	139	120	105	109	86	102	74
ATCTGCATTTTTCTTG	ref_3406_fdr	10	9	18	19	27	15	17	7	13	13
AATAATCGCTATCTTG	ref_3406_fdr	7	4	0	5	4	7	5	3	6	7
CTTTTAATGAATGTCC	ref_3406_fdr	38	32	48	35	48	30	39	38	22	36
TCTCATTATTCTTATT	ref_3406_fdr	282	315	354	349	348	309	316	335	355	274
CATGGGTTTTTTGATT	ref_3406_fdr	139	221	202	153	221	158	218	127	221	110
GCGCATCCTTTGATCC	ref_3406_fdr	17	7	8	7	5	10	11	13	10	8
TTTTGTGCCTAGGGGG	ref_3406_fdr	73	71	81	76	60	68	84	67	81	58
AGGCGTGGTCGCCTCG	ref_3406_fdr	17	29	26	26	27	15	31	14	22	14
ACGATGTTCGCGTGTG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTTTCTTCGGAGA	ref_3406_fdr	8	16	19	10	25	10	23	9	14	10
CGCATTCACGTTCTAT	ref_3406_fdr	12	34	18	19	22	21	13	17	22	10
CTTCCAAGACACTCTC	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
GATACAGAATCGCCCA	ref_3406_fdr	6	7	14	9	6	12	13	11	9	9
AGACTTGCGGAAATTC	ref_3406_fdr	9	12	12	9	9	6	10	6	25	6
TGGCCGGCCCCTGGGG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTTCAGGGTACGA	ref_3406_fdr	87	74	100	80	74	64	102	61	90	73
TTTTACGTTCTGGTCC	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CTAACGTTGCCGTTGC	ref_3406_fdr	92	67	88	69	73	65	55	79	81	62
GGTCCCTCTAGCACTT	alt_3406_fdr	138	141	132	121	147	102	140	122	144	124
GATGCGCTCTCCATGG	ref_3406_fdr	64	59	69	55	66	49	52	45	62	68
TGATGGCTTTTTTGCT	alt_3406_fdr	85	96	116	98	112	77	105	101	142	76
GAGGAACTAGCTAGAG	ref_3406_fdr	24	30	38	19	27	25	15	20	23	22
CTCATGTATTTCCTTG	ref_3406_fdr	16	10	10	14	16	16	19	21	18	16
TTAAGCTTTTTAACAA	ref_3406_fdr	45	50	63	63	38	46	42	39	27	32
TTATCCAACTTTGGTT	ref_3406_fdr	11	35	21	23	24	17	27	16	29	16
ATTAGAATCTTTCCGC	ref_3406_fdr	8	7	13	7	5	1	13	9	10	9
TCCATCGGGATAAACC	ref_3406_fdr	3	9	6	4	5	3	8	9	8	4
TTTTTCATTACAATGA	ref_3406_fdr	37	69	64	62	55	65	64	68	49	45
GGCTTCGGCCAGTCTC	alt_3406_fdr	45	53	57	38	34	29	39	33	49	34
ACCCAGGATCATTCGA	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
GTTGATGGATCTGTCG	ref_3406_fdr	52	60	64	61	59	40	55	54	54	47
ACGGCTAGTATTCGCC	ref_3406_fdr	44	48	59	32	47	40	51	40	53	34
CATGACCTAGTCTCAG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCCTTGTAACAGT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTAGTTAGGTCG	ref_3406_fdr	27	27	30	24	23	19	25	20	28	21
GAAGGACCCGGGATAG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
GATCGACATTGTTTCA	ref_3406_fdr	66	74	73	69	58	55	72	54	85	55
CTTTTGGAGTAGGGGT	ref_3406_fdr	51	56	68	49	55	46	70	60	62	48
GAAGGGGGCATGTTGT	ref_3406_fdr	40	36	39	33	32	44	48	34	46	23
GAACATACCACCAAGT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCCCATTAACGTT	ref_3406_fdr	30	17	26	22	19	28	20	27	27	24
GCCGAGCATATTATTT	ref_3406_fdr	26	14	30	22	16	17	14	11	22	24
TTCTGTTGCACATTTC	alt_3406_fdr	202	239	224	192	174	183	277	142	277	135
GCGTTCTGTCTCTATT	ref_3406_fdr	22	28	29	22	29	23	37	34	33	20
GACCGATATTGGGACG	ref_3406_fdr	9	18	17	9	8	10	11	7	17	12
TCTAGGGCCATTTAGT	ref_3406_fdr	14	11	9	11	13	4	4	7	11	4
GTTTTGTGGACCGGAT	ref_3406_fdr	42	42	52	52	36	37	45	39	48	45
ATCGCGTGACAAGCAG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCACCACCCGGG	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGAAATTACTATGAGG	ref_3406_fdr	68	70	85	78	86	66	80	74	100	60
CCGATTCAATCATTGA	ref_3406_fdr	28	49	32	40	62	31	47	30	45	23
TTTTGGGGGGGACAAA	ref_3406_fdr	6	17	16	9	13	8	18	14	23	4
CTGGAATAGCCCGTGT	ref_3406_fdr	0	0	0	0	0	0	0	0	0	0
CGCATAGTTACTATGT	ref_3406_fdr	1	0	2	0	3	0	1	0	5	2
CGACCTTCCATTGGTA	ref_3406_fdr	11	21	18	7	18	4	23	8	23	4
GTAGAACTATTTCGAC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TTACTAAGCTCCCTCC	alt_1284_RC	124	216	173	152	227	133	216	153	209	149
TTCGTCTAGCTCATTC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
CTAACATTCTTATTTA	alt_1284_RC	56	60	65	61	63	49	70	58	62	65
CTTAAACAAGCAGGGA	alt_1284_RC	49	54	67	46	59	48	46	42	43	41
TATACGACGATTACGG	alt_1284_RC	18	21	26	20	16	19	35	16	33	15
GCGATAGGCCCACACC	alt_1284_RC	24	18	28	24	24	23	22	28	31	18
TAGTCTTAGACTGTTT	alt_1284_RC	35	51	37	37	64	36	53	31	53	27
CCATTGGAAGCCTACT	alt_1284_RC	2	13	10	3	7	6	9	7	12	16
GCGCATCCCTGTCGTA	alt_1284_RC	65	112	74	71	92	56	119	53	120	42
GCTCACTAATTTTAAA	alt_1284_RC	11	14	13	8	14	8	17	4	10	8
GCATCGGCGGCTTCAT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GCGGTGCTGTTTTCGT	alt_1284_RC	29	45	49	30	46	30	44	26	48	33
CAGGCTCGGTTGTGTC	alt_1284_RC	20	34	22	11	23	27	27	23	57	15
TAATTTTAAAGTAGGA	alt_1284_RC	0	0	1	2	1	0	2	0	1	1
GTACAGATGCAACCTC	ref_1284_RC	19	20	20	24	30	20	27	13	22	10
TGCTCCACAGTCCCTG	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TTTGTGCATATGGCTA	alt_1284_RC	17	50	31	26	34	23	39	39	49	41
CTCTTAGGCGAGCTAT	alt_1284_RC	25	33	34	39	34	17	30	20	36	33
AATAACTCGGCAAACC	alt_1284_RC	77	141	106	101	106	96	101	87	117	82
GACGAGTTAACGCTCG	alt_1284_RC	29	44	47	38	52	49	44	38	52	34
TGATGGGTCCGATTAG	alt_1284_RC	15	20	28	19	18	11	16	12	19	11
AAATGGTGTATTCTGG	alt_1284_RC	17	32	33	23	32	25	33	25	30	21
AATCGTGTTCTCATGG	alt_1284_RC	23	24	28	26	25	20	26	18	19	16
CCGATCCTGGGAATAG	alt_1284_RC	12	37	18	15	20	23	33	15	39	21
TTGCATTAGACCCATG	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TTGACTCCCGATGGTT	alt_1284_RC	6	27	10	3	17	13	22	7	18	11
TCCGTCTGGCTACGTT	alt_1284_RC	7	22	10	7	14	3	17	9	8	9
TCGTGAATAACGGGTC	ref_1284_RC	128	148	172	114	165	97	125	124	147	91
AAGATTTTTCAGTACG	alt_1284_RC	11	25	20	22	25	17	20	22	14	16
CTCTAAAATGGTTCCT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
CCATTTTTTCCTTGAT	alt_1284_RC	6	6	10	8	5	6	11	3	12	7
CTCGGCTGCTGTGTTG	alt_1284_RC	14	12	5	4	14	7	14	3	11	7
TTTGCGGCACACCGAA	alt_1284_RC	41	43	68	43	40	39	41	38	49	26
GATATGCTCCGTATTC	alt_1284_RC	17	19	25	11	23	13	27	12	26	14
GCATCTCATACTGCAC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCACGGTTCCCTATGC	alt_1284_RC	6	15	10	6	11	2	11	9	11	2
AGAGGTCAACGTTAGA	alt_1284_RC	87	102	105	84	113	76	126	74	114	73
AAAGGGATCTAGACTT	alt_1284_RC	13	15	14	17	30	16	26	14	20	9
AGGATGGGCTCGGTCA	alt_1284_RC	18	32	23	28	28	25	37	26	41	19
CTAAATTCGGCCGTTC	alt_1284_RC	23	18	16	18	29	12	21	12	25	15
TGCGAAATAGGCCTAT	alt_1284_RC	6	10	11	8	13	3	12	4	11	7
CTTAGTGATGATTGTT	alt_1284_RC	18	19	20	15	22	17	29	20	27	11
ACGTGAATAACGGGTC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TGTTTGGTCCGACGGG	alt_1284_RC	17	22	14	21	16	22	16	13	18	20
TTTCGTGAATACAGTA	alt_1284_RC	117	136	149	109	148	121	154	124	141	111
ACAGATCTGTTTAGGT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GATATTGTCGCTCGTC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
ATCATGGGTCCTGCTC	alt_1284_RC	0	2	0	4	0	0	1	0	1	1
AATGGAGGGGAGACTG	alt_1284_RC	33	32	47	38	42	36	26	26	35	36
TTCTTCGTCTTGATCT	alt_1284_RC	39	37	49	55	43	37	29	40	33	21
TCCAGCTCATTTGCAT	alt_1284_RC	7	9	3	4	10	7	3	6	3	4
GCAACTATCCATCCGC	alt_1284_RC	7	17	7	8	12	9	17	11	9	3
GTGAGACCTTGTCCCA	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GATCACTACCCGTTTG	alt_1284_RC	30	38	24	21	33	27	28	11	26	22
GTATCGCTCTGTTGGT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCGCACTGTTGCTTGG	alt_1284_RC	16	15	16	26	20	21	30	13	17	14
CGGCCATCATGTGTGT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
CACGGTGTTACCCTTT	alt_1284_RC	9	2	5	5	7	9	12	7	5	4
GCGTATATTATGGCAG	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TAGCAGTAACATAGGT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCTGAGGGTTTCCGTT	alt_1284_RC	33	45	41	36	49	25	44	48	45	32
CCCCGCCTCGGTCAAG	alt_1284_RC	3	43	11	6	33	7	25	16	36	7
GCTGCACCGTTATACG	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
ACGTATTTGCGGGTTT	alt_1284_RC	25	31	22	31	46	33	56	31	51	32
CTGTTATCCGTTGTTC	alt_1284_RC	48	125	50	63	102	63	124	50	123	36
GGGTATATGATCATCT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
CGCTCATCTTCGTTAT	alt_1284_RC	104	103	110	103	127	73	123	101	115	88
CGCTAGGAGTGCCCCA	alt_1284_RC	54	68	50	36	72	29	75	28	64	25
GTGTCAGAACCCTTAG	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCGGGGGCAACTTCTA	alt_1284_RC	11	17	16	17	16	7	11	10	8	11
TGCACGTCAGGAAGTC	alt_1284_RC	8	15	24	8	13	10	25	22	21	9
GAACGTGGCTATCCTT	alt_1284_RC	30	21	27	24	40	17	29	23	33	25
AAGAATATTGTTAGCT	alt_1284_RC	1	0	0	0	0	0	0	0	0	0
ATATAAAGCGCTCTTA	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCTGGTTCCCTAGTCA	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TATGTTACGGGCAGTT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGGTGGCCTTGC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
ATTCTATCCTTGACCT	alt_1284_RC	25	31	29	34	30	20	45	26	32	24
GTTTTCGACTCGTTCC	alt_1284_RC	4	3	8	4	7	8	9	6	7	5
TTATCGCGTCCTTTCA	alt_1284_RC	7	7	4	8	7	5	9	3	6	3
GAGCCCCATTTGGGTT	alt_1284_RC	34	38	43	33	32	27	31	19	40	26
ATGCGCCGCCCCGATC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GGCATCAATGGACGCT	alt_1284_RC	9	26	13	11	12	14	19	14	19	9
TAGCGAGCTGATTCGT	alt_1284_RC	39	78	73	53	53	40	36	43	67	32
TTGGCATTGTTATGCA	alt_1284_RC	5	14	10	9	8	5	18	5	19	16
TCCTCGTATAGCGATT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
CTCCGCTGTTATTCCG	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GGAACCTGTGTTGTCC	alt_1284_RC	13	12	19	12	19	13	21	15	14	13
TCTGTTTTCTGAATTA	alt_1284_RC	0	1	2	2	4	3	4	1	4	3
CCCATTCTCGGCTGTA	alt_1284_RC	52	46	74	37	44	44	43	42	56	42
CACATTCTTATGAGGC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCGAATTGAAATTAGA	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GCGCTTTTGGTGATTA	alt_1284_RC	37	49	41	48	54	44	57	40	51	40
AACACCGGCGATATGT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
CGCTTAAGCTTGGGAT	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCATTTTAGAGCATCC	alt_1284_RC	3	7	7	10	5	4	2	5	2	8
ATGGGCTTTGGGCGAC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GCTAAAGCTCATTGGA	alt_1284_RC	5	7	10	6	12	6	10	4	5	1
TGACTGTGAGATCATC	alt_1284_RC	26	36	45	37	31	38	50	33	34	33
TTCACGTGCACTCTTC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
ACCTTTTTGCCAGAGG	alt_1284_RC	13	15	23	19	34	26	25	14	24	26
TGCTCTTTTTACGGAG	alt_1284_RC	44	47	34	45	51	48	58	49	55	38
AACGGGGGGCATACGA	alt_1284_RC	9	10	4	5	9	5	6	4	6	6
CATAAACCATTTTCCC	alt_1284_RC	20	23	26	27	34	22	27	32	33	25
TTGCTTTTCTCGTCCA	alt_1284_RC	18	14	32	12	27	10	21	15	13	12
CAACGCTTGGTATTGT	alt_1284_RC	56	90	63	65	87	62	94	56	94	60
ATTTTGCGGTCCTGCT	alt_1284_RC	19	14	27	19	23	16	29	21	19	18
TGTTATAAAACATAGG	alt_1284_RC	5	7	8	3	4	4	9	1	5	0
TGTACCCCGGCTAGCG	alt_1284_RC	120	158	183	155	180	122	208	152	200	140
TGTTCTAGCTCCAATC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TCTGTTATACTGCCCT	alt_1284_RC	54	95	73	69	100	59	92	59	92	67
CGCACTGAAGGGGTCA	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTCCCCGTGTAA	alt_1284_RC	48	76	67	50	91	52	76	40	95	41
GAAAATAGGTTATCTT	alt_1284_RC	47	65	87	48	73	64	82	50	82	57
GCTATTGATGCGACGG	alt_1284_RC	59	78	68	77	89	60	82	61	84	62
CGGTAAGAGTGACCAC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TTTGTCTACGTTTTCG	ref_1284_RC	15	34	35	30	38	23	33	16	41	23
CTTTGTGCACCTTCTC	alt_1284_RC	22	39	17	26	20	16	31	19	42	28
TTCCCGACGGAAGACG	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
TAATGTGGAGTTGGAT	alt_1284_RC	79	119	112	93	110	81	118	97	130	95
TTTGCGTAGAATTTCT	alt_1284_RC	41	25	40	31	24	20	33	33	33	17
TTCGTTCCCGGTTGTA	alt_1284_RC	8	14	13	7	9	4	16	10	9	6
TCAAGGAGACCTTACG	alt_1284_RC	16	16	16	17	18	26	22	17	25	11
TCGGTGGAATACTTGT	alt_1284_RC	14	23	26	27	27	18	38	14	20	16
GGTTCTCCGTTGTTTA	alt_1284_RC	4	6	4	10	10	5	9	2	4	2
AAGGTCTGAGAACCAA	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GCCGCTGGCGTCCACA	alt_1284_RC	3	2	0	4	4	4	8	2	3	8
GGTTTCGGCTTAAAGG	alt_1284_RC	64	92	65	72	93	51	85	69	75	62
ACTCCTTACAGCCTCC	alt_1284_RC	4	34	8	9	33	6	27	9	35	8
CCCCGCGCTTTAGCGC	alt_1284_RC	12	16	22	14	12	7	13	5	19	9
GTGCTAGCCGCACACT	alt_1284_RC	4	16	18	11	19	11	15	15	16	10
TTTCGCGGTATAACAC	alt_1284_RC	16	22	25	11	25	11	21	15	21	8
TTCCATCGCGGAGGTC	alt_1284_RC	154	184	193	165	225	161	253	152	225	146
ACACAGTTTTCCCGTT	alt_1284_RC	31	31	32	23	36	33	44	15	40	29
GGTTATAACATGCCGG	alt_1284_RC	81	65	84	71	90	70	82	78	65	55
CTGGCCACTTGTCGGG	alt_1284_RC	70	75	67	85	85	60	83	58	63	53
CCATCTACCTCCTCTC	alt_1284_RC	47	39	54	47	65	48	59	61	36	33
ACTAGCCTGCACACGC	alt_1284_RC	0	0	0	0	0	0	0	0	0	0
GCGCATCTTTCGACGA	alt_1284_RC	29	29	27	27	35	27	27	28	50	20
CCGTTGGGTTTGGTCC	alt_1284_RC	22	50	40	34	42	45	61	36	49	25
TGCGCGCACGTTAGTC	alt_1284_RC	41	47	64	52	55	50	45	45	80	48
GTGGCCTGCTCGGGGC	alt_1284_RC	57	65	81	55	67	63	77	60	66	47
GCGTACGATCAGCTTC	alt_1284_RC	14	9	14	5	8	4	20	3	15	1
AGTAAGGATTTTCCCC	alt_1284_RC	94	115	107	88	116	102	125	66	127	94
ACGACACTATCCTTAT	alt_1284_RC	38	39	47	40	48	40	46	28	45	33
AGCTCTTCACCTGGGA	alt_1284_RC	55	93	69	66	78	48	75	58	79	44
TTTACCATCCTCAGAC	alt_1284_RC	43	60	64	46	57	32	38	45	51	35
GATTCGGGTTTACGGG	alt_1284_RC	16	23	22	22	32	16	33	16	35	13
ACCGTAGGGCTGTGGT	alt_1284_RC	31	40	31	24	48	18	40	25	42	30
CTTTATACTAATATGC	alt_5637_new	31	47	35	41	40	32	52	30	35	26
GCTGGTGCTGATTCAT	alt_5637_new	31	45	38	42	34	35	49	38	55	25
GTGGAGTTCATTGTTC	alt_5637_new	0	0	0	0	0	0	0	0	0	0
CGGCATAGGCTTCCTC	alt_5637_new	8	12	9	14	5	2	14	12	7	4
GCAACTAATGACGCTC	alt_5637_new	10	9	5	9	11	3	8	6	8	7
CCTGGTTGTAGGGACC	alt_5637_new	6	12	4	8	13	10	15	9	10	6
ACTCATCCTCTGGAGA	alt_5637_new	14	38	14	11	34	14	19	9	34	11
TGCTTAATTTAATAGC	alt_5637_new	63	95	81	67	95	51	98	64	86	58
CAGGCGATGTCTTAAG	alt_5637_new	4	19	11	4	16	7	19	4	15	8
GCCCTGTCCCAGGTTG	alt_5637_new	9	12	10	13	11	8	12	8	15	5
CCTGCAACCGCGAGTG	ref_5637_new	94	120	104	78	142	86	148	80	146	67
TTATTCTCACACGGGG	alt_5637_new	85	127	100	66	117	70	126	61	121	48
GCGGCCCCTTCTGTAA	alt_5637_new	18	23	17	27	21	21	36	21	21	18
AATTCACTTTCATCAA	alt_5637_new	27	36	24	26	21	12	30	26	32	23
CGAGTGTTTTTGCACT	alt_5637_new	95	131	101	82	174	82	132	92	138	77
ACGATTACTCGGCGAT	alt_5637_new	25	49	27	23	38	29	38	22	43	26
TTGTTGTGCCTCACAA	alt_5637_new	31	37	45	34	40	32	45	21	54	39
CACCCTTGCCATTGGG	alt_5637_new	1	7	5	3	10	2	9	6	5	6
GCACGTATGTGGCTAA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
GGGGGGCTTTTTAACC	alt_5637_new	27	17	16	13	17	13	16	14	15	9
ATGGGTAGCAAACCGC	alt_5637_new	0	0	0	0	0	0	0	0	0	0
GTTTTACTAGACAGCC	ref_5637_new	122	218	151	99	224	113	219	107	198	111
TAGTGGCGTTCAGGAT	alt_5637_new	28	43	28	36	38	34	47	27	34	23
GGCGGCCTTTACCGAA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
TATCTTAGCGTGAATA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
GCATCACAGGGTTCGA	alt_5637_new	6	13	14	18	17	13	10	16	24	14
TTAGTCACTCATGATC	alt_5637_new	7	8	6	10	15	10	13	12	16	2
GTCCTCACATGTACTA	alt_5637_new	27	27	32	25	29	30	39	29	37	26
AGCGGGCGTTCTCTTT	alt_5637_new	57	80	31	52	69	50	73	40	62	38
CAACCGATGGCTGCCT	alt_5637_new	5	2	4	1	8	1	5	5	4	4
GTACTTGGCCCTCCGG	alt_5637_new	25	28	26	13	27	18	33	16	26	12
ACAGGGCTCGTCATTT	alt_5637_new	0	0	0	0	0	0	0	0	0	0
AAAACAGTCTTTGGTT	alt_5637_new	0	0	0	0	0	0	0	0	0	0
TAACAAAGTCCTAGTC	ref_5637_new	167	247	201	170	230	166	232	194	265	153
CATCCTTGCCATAGCC	alt_5637_new	10	21	16	7	11	11	13	10	16	4
ATCAAAATCGGGTTTA	ref_5637_new	147	161	180	124	190	128	180	113	174	113
ATTCTACGGTGACTGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
ATCACACAGGCTGAAT	alt_5637_new	11	11	10	13	7	8	9	3	9	7
AGTGTGTAGCGGGCAT	alt_5637_new	13	20	12	12	20	9	17	12	29	9
GAGGGTGTAATGAGCT	alt_5637_new	11	17	6	8	13	8	11	8	9	8
ACGGGTTAGAACGCTA	alt_5637_new	9	19	19	9	26	15	15	17	33	10
CATGTCGCTCCCCTTA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
GATAGCTGTTATCCAC	alt_5637_new	14	10	8	8	7	6	4	2	11	6
CGAACCCTGAGGGACA	ref_5637_new	42	74	77	51	66	39	66	54	70	46
CGTGGCATTTACCTAT	alt_5637_new	0	0	0	0	0	0	0	0	0	0
TCAGGGCTTGGTGAGC	alt_5637_new	0	0	0	0	0	0	0	0	0	0
CGTAGTTTTTACGGCG	alt_5637_new	20	29	21	12	30	21	28	12	22	16
TTGTTAGCATACACGT	alt_5637_new	20	28	14	9	20	11	34	14	28	15
CTCATACGGCTGCCTA	alt_5637_new	15	19	18	24	19	24	23	19	12	15
TGCCACCGTAGCAGCA	alt_5637_new	0	2	4	4	5	2	1	0	7	2
CCGTGTTTTCGCAGTC	alt_5637_new	0	0	0	0	0	0	0	0	0	0
TCGATTAGGATATATT	alt_5637_new	22	27	29	22	38	23	34	20	34	29
GTTTACACCTCTCTCG	alt_5637_new	21	16	17	20	23	19	22	18	28	20
TCAAACGTTGTACTTA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
ATCGCGGCTCTCTTCA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
ATGTGCTGCTCGCTGC	alt_5637_new	31	27	53	25	62	34	42	28	43	28
TGTCATATGTGTACAT	alt_5637_new	0	0	0	0	0	0	0	0	0	0
GGTTAAATTCGAGGAC	alt_5637_new	52	44	43	49	58	37	59	49	50	33
ATTTTTCGAAGGAAAG	alt_5637_new	22	37	22	19	28	13	36	28	38	15
TTCAACGTTACCGTTA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
TTTGCCGGGTGATTCG	alt_5637_new	22	24	15	21	22	16	23	18	25	9
GCCAAATCCTTCTAAG	alt_5637_new	0	0	0	0	0	0	0	0	0	0
CCAGGGTTCATGTCGG	alt_5637_new	41	49	43	32	59	32	67	43	50	37
GGTCTTTGCGGACACA	alt_5637_new	0	0	0	0	0	0	0	0	0	0
GCCTGGCTAGTCCGGC	alt_5637_new	25	33	37	32	35	21	34	18	42	16
GGGACTTCGTGTGTCT	alt_5637_new	0	0	0	0	0	0	0	0	0	0
AGTCTCTCCGTCCAGC	alt_5637_new	7	32	25	19	25	18	27	14	33	27
CTCCGTACGGGTTCGC	alt_5637_new	14	17	17	19	32	14	24	9	25	14
ACCGATTCAGGTCGGA	ref_5637_new	0	0	0	0	0	0	0	0	0	0
GCTAGCCACGTCGGGG	alt_5637_new	10	30	19	12	27	11	20	10	27	14
ACCGTGGCCTTATTGG	alt_5637_new	9	20	6	5	20	10	19	12	12	6
TTCCGCACTGGCAGCG	alt_5637_new	8	16	9	3	3	6	9	10	11	11
GGGCTCCGAAAGACCG	alt_5637_new	0	0	0	0	0	0	0	0	0	0
GCACGTGTTTGCGCCG	alt_5637_new	21	26	24	15	23	18	18	13	27	14
TACCGACCTAGAAAGG	alt_5637_new	2	2	3	0	3	0	2	0	2	2
TATCGTTCGTTACCCC	alt_5637_new	8	12	6	5	18	7	16	7	11	3
TGATGTCGTGATCCCG	alt_5637_new	28	33	29	22	52	23	36	29	22	32
CTGCGTTCCACTGAAG	ref_5637_new	13	36	28	20	27	20	31	22	25	17
TTCTTATTGGCCCTCA	alt_5637_new	6	8	14	8	6	2	15	5	12	6
TCCACATTCTGGACAG	alt_5637_new	35	51	41	23	45	28	72	33	41	44
AACCGGTAGTACCTGC	alt_5637_new	33	49	33	38	57	36	61	24	56	30
ATTCCCCATATTTAGC	alt_5637_new	11	15	16	17	16	14	26	8	14	10
CGCTTCGCGGAATGAT	alt_5637_new	74	116	90	81	153	66	137	51	131	70
AACCCGTGCTAAACTC	alt_5637_new	0	0	0	0	0	0	0	0	0	0
CTATCAAATCATATGG	alt_5637_new	7	21	18	8	11	8	17	9	21	9
GTGACACGGTTGGGAA	alt_5637_new	5	3	7	2	4	1	5	2	3	2
CGTGTGCATCTCTTGA	alt_5637_new	15	26	14	8	13	15	21	16	13	17
TGTCACAGTATTACGT	alt_5637_new	61	72	68	52	103	56	94	55	92	56
TCGATAGATCAACTCC	alt_5637_new	0	0	0	0	0	0	0	0	0	0
TTATAATCGATCTTGC	alt_5637_new	40	61	64	50	44	40	68	40	64	38
TTAACAAGGTGAACAG	alt_5637_new	25	38	31	27	51	18	39	26	40	27
GAAGTAGGACCGTGCG	alt_5637_new	38	79	57	52	78	47	92	48	78	34
TCACATCCCTATAAAT	alt_5637_new	0	0	0	0	0	0	0	0	0	0
AATAATTTACTGCTGC	alt_5637_new	0	0	0	0	0	0	0	0	0	0
ATCTCATTGTCATATG	alt_5637_new	6	5	7	7	16	9	10	3	8	6
GTGATCAATTTTCTGG	alt_5637_new	21	26	34	35	30	31	33	15	45	17
TTCGGATATGTACGTG	alt_5637_new	0	0	0	0	0	0	0	0	0	0
CGTAGAGGGAAGTCTA	alt_5637_new	31	40	35	23	32	28	31	27	38	32
CGGTGTTCACGATCTG	alt_5637_new	7	19	14	14	16	10	11	7	18	11
TTTTTTCAAATTTGAT	alt_5637_new	0	0	0	0	0	0	0	0	0	0
TAATATACCAATACAC	alt_5637_new	2	0	1	2	1	3	4	5	4	5
CACGCTATTAACCTGC	alt_5637_new	84	107	79	76	142	70	112	76	122	62
TCCTTTCTTCCATGTC	alt_5637_new	20	34	30	21	28	23	44	21	26	20
TCCCTTCACTACGTTC	ref_5637_new	4	0	0	2	2	1	1	0	1	0
GACAGTGTCTAGGGCG	ref_5637_new	10	9	6	5	11	8	9	8	8	3
GCGTCGTGTAAATAAT	alt_5637_new	3	6	3	2	2	0	8	2	4	1
CACTATCGTTCAATTA	alt_5637_new	48	57	43	41	68	24	80	27	60	35
TTAACGCCCACCCTTC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTATTCGGGCCA	alt_3878_upstream	81	64	74	76	45	89	50	69	49	59
CGGCAAGGCTTTTAGG	ref_3878_upstream	66	36	99	64	40	83	35	67	28	66
ATTTAGTTCATTCATG	ref_3878_upstream	10	10	10	7	4	10	9	9	4	11
ACAGGCATTGGTCTAA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCCACCCTGTAGT	ref_3878_upstream	53	42	73	85	40	64	52	64	35	56
TACAGCGGCTACCCCC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
GTCTATTCAGGATAAT	ref_3878_upstream	64	53	96	79	42	52	48	79	75	74
TGTCCCAACTCCCTAA	ref_3878_upstream	60	32	49	63	61	44	35	52	33	47
CTATGTAACGCGAAAT	ref_3878_upstream	24	19	39	38	26	25	22	37	25	30
ACATAGGATAATTATG	ref_3878_upstream	10	8	9	9	12	7	12	7	12	7
TGATGGAGACTTTGGT	ref_3878_upstream	15	14	22	22	13	13	11	12	17	24
CGGTACGTGGGAAGGT	ref_3878_upstream	115	143	109	101	152	87	156	89	161	78
TGTGGCGCTTCTCTTT	ref_3878_upstream	164	73	165	164	58	150	73	165	62	132
TCGGAGCCTGGGTAGG	ref_3878_upstream	60	20	71	60	40	49	43	61	28	44
CACGTTAGGCAGTCAG	ref_3878_upstream	36	31	65	33	26	56	27	47	30	32
TTCCCTGACTTGCCTT	ref_3878_upstream	4	2	4	1	3	2	4	3	4	5
AACCACCTTTGGTTAG	ref_3878_upstream	11	9	16	10	9	16	8	11	13	9
AATGATGTTTCCGAAT	ref_3878_upstream	246	116	276	231	128	238	123	227	153	187
ATAGCGCCTCGCGGAT	ref_3878_upstream	67	34	78	55	38	71	31	53	42	62
GTAACTGCGTTATTTG	ref_3878_upstream	57	47	83	65	31	59	34	48	44	54
CGGGCATCTAGTTATT	alt_3878_upstream	283	205	334	290	179	273	199	280	234	264
TATTCCAATATCGTCT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
AGAATTTGGCTAGACG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTTATTTTTCCGC	ref_3878_upstream	43	28	55	52	16	59	17	51	27	40
GCGAGTATATTATTCG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TACGATATCACCCGAG	ref_3878_upstream	24	12	26	28	18	17	11	24	13	21
CCCCCATCTCGAATCC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CACGTAATAGTGTTTT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TTAACTTTGGCTCAAG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
ACATGTTGCAGTGGAG	ref_3878_upstream	59	36	90	74	34	86	45	63	36	57
ATGCCGTCTGGTGCCT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCTGTGAGCGAG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CATGAGCCCCTCGACA	ref_3878_upstream	103	80	153	115	56	111	73	112	72	119
TTCCAGCACTGGTTGC	ref_3878_upstream	89	53	112	79	63	82	47	78	54	70
TTTGTAGTTATACCAC	ref_3878_upstream	56	49	93	62	47	61	43	48	42	50
ATCGAAAATCGCTGTA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TTGCCAGGAGTACGAC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CACATATTTGATCAAG	ref_3878_upstream	16	6	25	19	13	8	13	11	16	15
CTGGTTCTAACATCGC	ref_3878_upstream	78	30	78	55	31	55	39	51	25	65
CCCTTCTTATACCTGG	ref_3878_upstream	4	11	6	12	3	4	4	8	3	5
TGTTTTATTTGAGCAC	ref_3878_upstream	62	31	69	59	38	60	42	52	32	54
CGGTAAGGCTAGTTAA	ref_3878_upstream	29	20	37	28	16	21	20	22	13	25
CCTAGATCACTGGGTT	alt_3878_upstream	14	21	8	9	31	12	20	13	28	5
GGATCCGAGAATACGG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCTTTGTTCCTTT	ref_3878_upstream	87	40	87	57	42	71	64	70	59	44
TGTCGCTTTTGGATTC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CGTGACTATCTGCTTA	ref_3878_upstream	17	5	9	12	8	9	5	11	6	8
TGTTTTGGGCCTACTC	ref_3878_upstream	58	38	80	74	36	62	37	63	40	60
TCTTATCGTTGAGTTC	ref_3878_upstream	68	39	89	76	50	99	58	78	52	74
GGGCGGTACTAAGTCA	ref_3878_upstream	13	5	18	12	13	12	4	10	9	11
ACACGGTTACTGTGTA	ref_3878_upstream	113	98	154	144	131	116	134	131	118	98
CGCTTGGCTTCGTTTT	ref_3878_upstream	26	15	39	25	19	22	19	26	15	29
TTCAGCCAGGAGGTAA	ref_3878_upstream	68	63	120	101	67	80	81	101	87	71
CTGTACTACTCAGCAA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TTGCACACATTTTTAT	ref_3878_upstream	101	52	81	89	55	84	54	84	51	79
AACAAAATATTAAGGT	ref_3878_upstream	205	106	300	250	103	216	123	175	120	200
GGTCGAACGACAAAAC	ref_3878_upstream	51	36	66	49	42	45	41	46	42	45
TATACGGCATATGCTC	ref_3878_upstream	25	11	23	22	14	23	6	17	12	18
CCGCGCTATACGGCCT	ref_3878_upstream	1	1	2	0	0	1	0	3	1	1
CATCTGGTTAGATCGG	ref_3878_upstream	97	52	131	85	58	91	55	85	64	72
ATGCGTAGAGCTTGTG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTTGTTTTACTCC	ref_3878_upstream	8	5	7	4	7	4	3	3	0	1
ACCGATGCTCAGGACT	ref_3878_upstream	178	126	202	193	128	198	129	177	127	158
AAGATGACCGACCGGA	ref_3878_upstream	66	36	63	59	24	47	32	56	26	47
GCTTAGACCCTTTAAT	ref_3878_upstream	10	3	3	5	5	4	6	7	3	1
ACTAGGGTAACAAAAA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGCTTCCGTTTCT	ref_3878_upstream	53	22	54	45	22	52	20	43	24	49
GTCGCTTCGGAGTGCA	ref_3878_upstream	115	65	164	124	78	122	87	127	75	113
TCTTCCTGCATCACCC	ref_3878_upstream	50	26	69	61	36	57	31	68	32	47
GTCGGGCCCGTCGGCC	ref_3878_upstream	67	32	83	48	23	66	38	62	30	52
TCTACCCGGCTCCGCT	ref_3878_upstream	34	15	58	39	38	33	22	44	22	50
TGACACAAGAGGCCCC	ref_3878_upstream	49	24	78	54	22	45	24	50	23	34
CCACCTTAATCTCACG	ref_3878_upstream	11	6	11	13	6	10	8	8	8	8
GAAACGGCCGTCGGTT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTATTATGACCTT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TATCTGGCACCGCGGA	ref_3878_upstream	52	54	98	72	37	66	44	78	49	56
CTCTAGGCCTATATCT	ref_3878_upstream	73	45	81	86	45	54	59	81	47	52
GGTATACGGTAGAGCA	ref_3878_upstream	72	56	93	94	60	86	62	89	39	64
CCGCCCTCTAATCGCA	ref_3878_upstream	40	25	68	63	38	64	26	61	28	47
GAGTACGTATATAGCC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCGAGAGCTGGA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TGAATTATATATCTCT	ref_3878_upstream	46	24	69	48	25	46	31	60	28	53
CTCGACACGAGTTGTT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGGTTATCGTCGA	ref_3878_upstream	382	221	513	461	211	410	257	398	252	328
CGTACGGCATTTGTCT	ref_3878_upstream	17	6	26	27	14	15	8	15	11	16
TAGTATTTCATGTGAA	ref_3878_upstream	47	26	72	66	32	43	24	52	28	47
CTATGCCAATGTAGAC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
GCATGTTGCCGAGAAC	ref_3878_upstream	233	157	329	318	153	273	186	254	194	274
GCGCTAGTCGAGCAGC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTTCTTGCGCGGA	ref_3878_upstream	75	45	86	93	37	56	35	73	56	63
GCTCTGGGTCATGGGC	ref_3878_upstream	45	28	36	37	15	30	25	36	29	32
ATTGGTGAAATAGATA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCCGTTAACACAG	ref_3878_upstream	54	28	90	69	28	68	29	63	20	57
ATCAACTCTCTTCTTG	ref_3878_upstream	92	31	135	93	48	81	36	104	51	61
TATTATACTGGGCTCC	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TTCACCGCGATGGGTA	ref_3878_upstream	23	34	35	27	51	32	63	25	39	28
ATGGGGGCCTGATTCT	ref_3878_upstream	33	18	48	59	16	46	20	31	22	35
GAGGTCTCGGTTCTCT	ref_3878_upstream	197	133	282	220	116	195	163	201	127	188
GATGTCTGTCCGAACA	ref_3878_upstream	22	11	30	28	12	34	16	26	14	30
GGTAACTCAAGTTTCT	alt_3878_upstream	0	2	4	1	1	0	0	1	2	1
GGTAAATAGTCTATCT	ref_3878_upstream	91	50	92	99	49	87	55	79	49	72
TCTACCATAACACACT	ref_3878_upstream	166	96	256	220	114	174	86	156	116	157
AAGCTTCTCACTTGCC	ref_3878_upstream	41	23	40	30	19	35	21	39	28	41
CTCGGTTGCCGTGCTA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TCGCAGTCCATGAAGT	ref_3878_upstream	40	21	51	44	32	26	34	27	29	38
GTTGACTATGGGTAGG	ref_3878_upstream	22	1	14	12	10	14	7	8	9	17
CTTTTATGTTGGAGAC	ref_3878_upstream	64	39	107	92	51	75	46	79	42	63
GTTGGGTGCATCATCC	ref_3878_upstream	17	12	20	20	12	7	12	15	13	22
CGGACATCCCCCCTTT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
GAAATGTTCCGAACTT	alt_3878_upstream	24	14	29	32	13	23	17	23	13	15
CGAATCGCCATAGTCC	ref_3878_upstream	17	14	21	16	20	9	28	14	21	8
ATCGTTCTGCCGGCGG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
GAGTACTGGGCCGCCG	ref_3878_upstream	8	3	17	16	7	5	8	16	8	9
ACAATTATGTCGTCTA	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
TCGGATCCGGCTCTTG	ref_3878_upstream	8	6	10	12	5	10	2	10	4	9
TAGCCTTTTAAGGGCG	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
CACGAGTGTGTGGTCG	ref_3878_upstream	77	58	105	78	47	79	42	65	44	83
ATGTCAGGTGCTCGGT	ref_3878_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCGTCAGAGTGTT	ref_3878_upstream	48	18	52	30	30	39	28	42	26	44
GCAATCCCGGAAAGTC	ref_3878_upstream	41	8	37	15	12	27	17	31	12	30
CATACTACCGCGCTAT	alt_3878_upstream	54	30	63	51	39	46	26	49	16	40
TTCAATGCTAAAACGC	alt_5675_new	44	33	68	64	26	56	47	60	43	37
GATCACACTAAATCTT	alt_5675_new	13	13	22	21	8	13	8	14	12	19
TTCCGTCCCAGCCCGG	alt_5675_new	32	12	48	28	19	33	17	28	12	18
TCATAATTACGGCGCA	alt_5675_new	44	16	59	62	30	56	43	40	43	47
ATCCGGATAAAGCCTG	alt_5675_new	65	45	66	58	32	49	35	70	27	60
GATAAGTTCGGTTTAT	ref_5675_new	528	314	619	507	313	505	329	439	344	434
TCTTAAGGGTAGGCCC	alt_5675_new	11	10	14	19	20	19	12	17	13	11
AGCATTAAGTACCAGA	alt_5675_new	11	1	14	9	9	4	9	9	8	10
GATACATAAATTCACG	alt_5675_new	927	495	1161	929	574	898	587	842	606	786
TGAGCTGCCTTCTGTT	alt_5675_new	0	0	0	0	0	0	0	0	0	0
GTACAAGTCCGTACTG	alt_5675_new	46	22	50	45	30	43	35	45	38	38
ACTGGCGCTGGCCTTC	alt_5675_new	0	0	0	0	0	0	0	0	0	0
TGGATGGCACATGTCA	alt_5675_new	102	68	120	123	77	114	64	97	81	97
TAATAGAGCACGCGCA	alt_5675_new	0	0	0	0	0	0	0	0	0	0
CGCAACAGGGCAAGAC	alt_5675_new	0	0	0	0	0	0	0	0	0	0
AGCTCAAGTCCATAGG	alt_5675_new	0	0	0	0	0	0	0	0	0	0
TGGGCATTGCCTCCGT	alt_5675_new	37	14	33	35	16	30	19	26	21	21
CACTGTTGTTCGTATG	alt_5675_new	44	21	42	46	18	24	26	36	22	20
TCCGGTTGCCCGCCAA	alt_5675_new	0	0	0	0	0	0	0	0	0	0
CCCTACAGTTCCTGAC	alt_5675_new	116	85	122	140	59	125	92	97	85	93
TCTATTCCATATTGCG	alt_5675_new	5	6	15	18	4	6	5	10	8	10
ACATATCAAACCCTTT	alt_5675_new	6	3	13	9	7	14	8	6	9	6
TGCGAAATAAATGCCA	alt_5675_new	39	27	66	44	28	43	21	55	25	33
TCAGGCCGTGGAATAT	alt_5675_new	10	10	7	7	3	10	9	8	6	13
GTGATCTTGGGCCCTA	alt_5675_new	0	0	0	0	0	0	0	0	0	0
TGTTTCTGAGATTTCA	alt_5675_new	128	77	182	160	92	116	94	158	96	129
CACGTGTGTTCGCCAA	alt_5675_new	6	11	18	12	11	4	8	5	7	8
GCCGTCTGTGGGCTTG	alt_5675_new	12	11	13	16	18	8	12	10	19	9
TTGTTTGTTAATGTCG	alt_5675_new	22	15	32	29	16	29	9	27	10	14
TTGTTCTTCAACGCTT	alt_5675_new	143	68	131	149	70	142	79	135	96	111
TGGCAGGCGAGGGAAA	alt_5675_new	0	0	0	0	0	0	0	0	0	0
TGTTGGTTCAATGTTG	alt_5675_new	264	171	319	282	201	226	197	261	182	198
ATTGTGTACCCCTGCC	alt_5675_new	0	0	0	0	0	0	0	0	0	2
GGTCAGCTCCTACCCG	alt_5675_new	52	32	72	58	38	45	49	54	49	52
TTGAGCGTTGCGCCCC	alt_5675_new	44	22	32	25	22	37	28	23	21	32
GAACCTCGAAATGACA	alt_5675_new	41	21	53	40	35	42	31	38	20	42
ACTAGGCGTCGATGGG	alt_5675_new	71	48	76	79	49	65	47	58	58	57
CCCCTCGATCACACCA	alt_5675_new	2	6	5	3	1	4	4	2	0	3
GTATTGTGGTAGCTAT	alt_5675_new	18	13	12	15	6	20	8	14	13	12
TCCTTATGTCAACAGT	alt_5675_new	58	69	74	71	81	63	89	74	80	54
CTCGAACTTTACTTTA	alt_5675_new	25	13	22	17	16	24	8	27	15	17
GGCGAAATCATAATAC	alt_5675_new	89	62	99	102	46	79	76	92	67	76
CTTACTTTTATTGGCT	ref_5675_new	52	35	94	79	42	60	40	71	39	71
TTCTGCTGTAATAACG	alt_5675_new	0	0	0	0	0	0	0	0	0	0
TAAATGTCATATTGTC	alt_5675_new	0	0	0	0	0	0	0	0	0	0
TCTCGTCTTAATCTCC	alt_5675_new	34	29	36	38	21	31	23	31	13	25
TGAGGCCGCGGAGTTT	alt_5675_new	7	6	13	8	7	12	3	4	4	6
CTTTAGGAGGCGATGT	alt_5675_new	114	83	135	148	76	146	79	121	88	97
TACTTTTCAGCCTACT	alt_5675_new	0	0	3	0	0	0	0	0	0	0
ACAGTCTGCCTGACGA	alt_5675_new	181	133	238	195	132	185	116	214	134	156
AAATCCGCCTGGGATG	alt_5675_new	0	0	0	0	0	0	0	0	0	0
CATGCGGTCACCTTGA	alt_5675_new	0	0	0	0	0	0	0	0	0	0
TCCCTTTGCCCGTGGC	alt_5675_new	26	14	37	27	11	28	7	24	18	14
GTCCAGCGTAGTACTT	ref_5625_new	11	26	6	8	17	4	14	10	23	6
GCATGATGTCCTTCCG	ref_5625_new	52	88	98	58	117	82	125	63	94	55
TTTATGGGCGATGTCG	ref_5625_new	161	280	199	175	289	180	304	152	304	149
CTGAGTGGACGGGCTT	ref_5625_new	17	34	19	15	45	13	41	19	61	17
ATCAGGTCAGACGTGT	ref_5625_new	0	0	0	0	0	0	0	0	0	0
CGTTCAGTCTATCTTC	ref_5625_new	34	56	39	33	68	36	68	25	68	38
CACTCGTCAACTGTGG	ref_5625_new	2	17	0	2	19	2	17	0	17	3
CTTGGTTGTAAAAAGA	ref_5625_new	15	33	16	16	33	13	40	21	31	11
CGGCGATACTTTGCTT	ref_5625_new	33	79	61	39	90	28	72	25	74	48
CTTCCCGTGTTGCAAG	alt_5625_new	99	158	118	130	173	98	185	95	179	76
AAGAATTATTGGTCAC	ref_5625_new	26	54	41	18	51	41	70	27	52	19
AGGTTTCCGCTATGTA	ref_5625_new	0	0	0	0	0	0	0	0	0	0
TCCGGATCGCTGCAAA	ref_5625_new	3	2	2	2	6	0	5	1	5	3
ATAATGTTTTTTCGGC	ref_5625_new	12	11	9	10	29	6	13	10	18	5
CTGCTCAGACAGAAAT	ref_5625_new	26	45	34	32	49	24	48	13	56	40
TCCACAGGAGCACGGC	ref_5625_new	0	0	0	0	0	0	0	0	0	0
ACCGTGGGCATGTTCC	ref_5625_new	10	31	15	13	27	13	24	18	33	13
TGGAATTGTGAAGCGG	ref_5625_new	0	0	0	0	0	0	0	0	0	0
TTCCGTTCACTTATGG	alt_5625_new	190	306	200	191	306	180	350	162	332	160
CTCCATCGCTCATTCC	ref_5625_new	11	16	20	10	30	9	22	11	28	15
CCCCACTTTTTCTGGG	ref_5625_new	17	57	17	18	62	10	72	20	71	20
AATCTTGAATTGCTAG	ref_5625_new	10	7	4	3	16	7	7	6	11	3
CTGATACAACCTCAAT	ref_5625_new	2	3	4	5	5	4	10	6	7	5
GTCTAGTTATCCCCAC	ref_5625_new	58	205	75	62	234	62	226	55	233	66
GTAAGGCCATGCGCTA	ref_5625_new	0	4	3	4	2	5	4	1	10	2
AGGCGTCCACAATTTG	ref_5625_new	0	0	0	0	2	0	0	1	1	1
GCTGGTTTTAGGACAT	ref_5625_new	29	43	29	22	36	27	50	19	37	31
TCATATTATTAATTCA	ref_5625_new	35	50	33	35	39	42	48	30	52	26
CATCACATCCGTATAG	ref_5625_new	0	0	0	0	0	0	0	0	0	0
CCATTATTAAGTCGGC	ref_5625_new	0	0	0	0	0	0	1	0	1	0
CAGTCCCGTCGCACTC	ref_5625_new	14	32	30	21	37	19	44	24	31	15
CTCCCCTAGCCGGAGG	ref_5625_new	11	41	8	6	26	6	30	8	28	11
ACTACACGAGCCCTTG	ref_5625_new	46	72	47	44	81	42	66	40	69	41
GTCATGCAATTTACGA	ref_5625_new	6	14	6	11	11	7	11	9	11	6
TCTGGTCAATGCGTGG	ref_5625_new	15	52	23	19	43	15	46	18	45	14
GTGTTTCGGGTGAGTT	ref_5625_new	0	0	0	0	0	0	0	0	0	0
GTTGATTTTGACTACG	ref_5625_new	48	137	85	60	134	66	129	59	126	55
CTGGCGCCGACATAAT	ref_5625_new	27	42	22	13	48	22	29	19	39	18
GCTTTGTACGTCCACA	ref_5625_new	41	102	54	55	104	38	96	42	88	44
GCTATTGCATTCGGCT	ref_5625_new	1	4	0	1	6	1	3	1	8	4
CGCTAGCTAAAAGCCC	ref_5625_new	1	0	2	1	3	2	1	1	4	1
CAGAAGTGCTAAGATT	ref_5625_new	56	98	72	67	84	65	100	50	109	38
ATTTTCTATCAGTCAC	ref_5625_new	26	37	34	30	64	28	52	29	65	26
GGCTTTTCTGAGGCCC	alt_5625_new	8	9	8	11	9	5	9	6	13	5
AGGAAGTCGCGCAATG	ref_5625_new	11	25	16	14	18	14	22	9	21	9
CTTGGTTTGCGGTTAG	ref_5625_new	0	0	0	0	0	0	0	0	0	0
ACTTTAGTCAGTTAGT	ref_5625_new	21	83	39	24	70	22	83	20	80	30
AGATGCACTACGTAAG	ref_5625_new	0	0	0	0	0	0	0	0	0	0
GTCTTGTGTCCCTTCT	ref_5625_new	2	2	6	6	7	1	4	4	9	0
TCGCCGCTACAAGCGT	ref_5625_new	0	0	0	0	0	0	0	0	0	0
TGCTGCGATGCGTGCC	ref_5625_new	59	89	57	66	92	47	85	56	104	46
TACTACTTTCGCAGGT	ref_5625_new	51	76	57	42	69	37	89	37	75	51
TACGTGGGTCCCTTAC	ref_5625_new	34	47	33	15	45	30	59	16	58	22
GGGTATATCCTCGTTT	ref_5625_new	33	46	20	33	63	21	44	31	58	25
GAGAGCGTGTGATACT	ref_5625_new	14	32	35	21	51	20	46	21	44	17
CGTGCGTAATATGCAG	ref_5625_new	1	4	3	1	0	4	1	0	1	3
TTGATAATTACTTGGG	ref_5625_new	28	44	38	27	44	29	56	20	48	32
TCAGCTTCATTTACCG	ref_5625_new	115	289	190	128	274	140	309	139	398	128
CTAGTTTCTCCTTGGT	ref_5625_new	13	32	27	12	38	14	33	14	35	11
CTGTGGATATCTTAAG	ref_5625_new	0	0	0	0	0	0	0	0	0	0
CTTAAAAGTCCACGTT	ref_5625_new	4	2	2	3	3	5	4	0	3	3
TCACACACTGTTTTGC	ref_5625_new	16	44	32	27	46	22	46	24	54	21
CAATTAACTGGACTGT	ref_5625_new	39	76	49	35	78	34	73	41	71	40
AGAGGCAACAGGGCAG	ref_5625_new	0	4	5	2	1	6	1	1	6	1
TAAGCACACATCCACA	ref_5625_new	10	51	11	29	61	11	72	14	72	8
CAAGGAATCGTGGGGA	ref_5625_new	54	77	55	37	74	41	97	54	75	52
CTGTGCTTCTACTTGT	alt_6109_new	8	7	6	5	9	5	7	6	9	6
GATGATCGTTATACGC	alt_6109_new	0	0	0	0	0	1	0	0	0	0
CGTTCTATTAGACCTC	alt_6109_new	19	13	29	19	26	20	21	9	22	22
TGCTTCTTCCTTGCGG	alt_6109_new	34	31	38	35	21	30	27	36	25	24
CTAGACTATGTCTGGG	alt_6109_new	0	0	0	0	0	0	0	0	0	0
AAATAGGAACCTGCCC	alt_6109_new	60	41	88	63	75	69	64	78	55	68
TGGACACGTTGTAGAG	alt_6109_new	17	11	24	20	24	22	15	37	17	19
TAGGTAATTTCAAGTC	alt_6109_new	19	11	13	18	17	12	12	28	9	9
CTCATGTTCTCCGACT	ref_6109_new	147	178	195	182	157	146	184	155	181	153
GTCCAAGTGCGCAGGT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GCACAGTCTCGTTCAG	alt_6109_new	0	0	0	0	0	0	0	0	0	0
ACAGAGCACAGCACGC	ref_6109_new	160	135	190	179	128	176	128	156	114	134
TTTTCGTGTTAGGTTC	alt_6109_new	0	0	0	0	0	0	0	0	0	0
TCCTGATCGAGTTGCT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GTGACTGAAGACAATA	alt_6109_new	52	41	68	47	46	48	50	44	55	37
CGAACTCCTCTCTCGG	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GATGTTCTAATCAATA	alt_6109_new	92	54	95	76	79	95	65	91	71	87
GCCGTGGGGAAGTCTC	alt_6109_new	22	24	40	37	17	23	18	23	20	8
TGAATGATGAGGTTAG	alt_6109_new	43	20	53	41	35	44	38	30	27	26
GCACAGTCTCGTTTAG	alt_6109_new	46	70	69	57	71	71	55	66	67	61
TGTGAGAGCGCTTGTG	alt_6109_new	4	1	8	10	8	7	5	9	4	3
GAAAGAGCGTGAAGTC	alt_6109_new	8	8	20	17	9	15	7	18	11	6
GTTTTGTGAAATTTCT	alt_6109_new	31	36	52	34	14	37	28	27	37	38
CCGACCGTCGGGGGTC	alt_6109_new	4	5	7	11	8	5	9	9	12	6
AGTCCGAATCTGTTGC	alt_6109_new	0	0	0	0	0	0	0	0	0	0
TTTCGTGTAGTAGAGT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GCTGACCGGATATATG	alt_6109_new	14	21	16	13	19	22	35	11	30	19
CAAACGCAGAGGGGTA	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GGTCAGGGCCAAGCAC	alt_6109_new	13	10	16	4	14	9	10	7	12	9
ATTCCCGCTCCACAGA	alt_6109_new	0	0	0	0	0	0	0	0	0	0
CCTTATGCAACTGTAC	ref_6109_new	15	20	16	21	20	12	22	14	21	10
AGGTTCGTTCAATGAT	alt_6109_new	51	56	62	61	47	44	46	51	55	42
CAGTCTAAGAACGCTC	alt_6109_new	1	5	4	2	1	1	2	0	4	3
CGTGACGCTAGGATTG	alt_6109_new	19	14	24	22	11	18	8	14	13	13
GCCGGGTGTACTGGAG	alt_6109_new	6	5	9	11	13	10	13	4	16	6
GAAGCATTGAGTTCGC	alt_6109_new	16	13	25	22	21	16	13	16	11	22
CTTATGAATAGCATCA	alt_6109_new	78	83	116	98	78	111	103	77	88	66
ACTGTGCAAGACTGCA	alt_6109_new	37	39	44	46	38	38	40	44	28	29
AGGTACTGAGATTGCC	alt_6109_new	47	26	47	33	24	38	31	33	24	22
CTATGGCACGCGGGGC	ref_6109_new	177	122	177	151	123	165	166	162	169	146
TACGATTGGCAGTCGG	alt_6109_new	28	28	47	33	24	40	41	24	30	33
AATGCATGTGCTGCGA	alt_6109_new	3	3	2	0	3	1	4	2	0	1
TCTGCAGCACGCAAAC	alt_6109_new	22	24	27	26	23	17	16	28	26	21
GCAGAAAATGTCTATC	alt_6109_new	33	39	40	30	39	31	28	42	27	33
GACCTGCTTCCGGCTT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
CTGGACTGGCATACGA	alt_6109_new	73	56	57	45	50	50	46	40	43	43
CTATTACATGCGCTGT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
AAGCTCTCCGGGAGTT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GTCTCCTAGTAGCTTT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GGTAGATGGGTCAGTA	alt_6109_new	10	6	7	2	4	6	12	17	9	7
CGTTTTGCCACTTTTA	alt_6109_new	17	13	18	24	22	28	14	14	10	17
TGGATGTCGCGCCTCC	alt_6109_new	64	39	74	51	37	50	56	57	57	65
CAGTGGCCTGCGTGAA	alt_6109_new	36	33	44	35	35	52	34	37	30	38
ACCCATTGTCCAGGAT	alt_6109_new	44	33	64	47	41	48	50	60	49	46
AGGGACGCTGAATACC	alt_6109_new	79	62	73	67	59	56	71	65	98	75
GTAATGGTACAACACG	alt_6109_new	10	9	9	10	10	6	7	8	8	10
ACGACAGGACCGGTCA	alt_6109_new	53	37	60	45	26	46	37	40	35	27
ACGCGGAATGTTTTAG	alt_6109_new	158	127	199	142	147	166	148	132	114	118
TAAATCAACCCTCGCC	alt_6109_new	25	14	24	22	19	21	23	22	11	13
GTGATACGTGTTAGCT	alt_6109_new	16	23	17	10	11	9	10	17	16	11
GTCCTTAATGACCTTG	alt_6109_new	16	11	12	13	15	25	14	17	12	10
TCAAGCTCTGAGGGTG	alt_6109_new	73	55	114	68	59	50	69	76	81	79
CTCGTTTTTCTAGAAA	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GATGATCGTTATTCGC	ref_6109_new	330	224	449	339	258	335	283	354	301	341
GTGTTTATATCCAAGG	alt_6109_new	115	95	142	118	93	111	81	136	96	87
TACTTTTTATTGCATA	alt_6109_new	0	0	0	0	0	0	0	0	0	0
ACGGCACACCGTGTCC	alt_6109_new	21	19	30	23	22	17	27	15	13	13
ATGGTATGTACTGATC	alt_6109_new	24	7	16	10	14	16	7	17	8	21
ACTGACAACGTAATAC	alt_6109_new	76	82	133	96	84	76	76	94	86	83
GTGAGGCTTCTCACGT	alt_6109_new	174	130	203	160	127	165	133	175	152	120
GCCATATAGGCACCAG	alt_6109_new	21	15	25	15	8	20	18	14	24	13
AGTCCGAATCTGTTAC	alt_6109_new	10	14	3	7	13	7	13	5	7	5
AATACCGTAGTTTCGT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
CAATTGCGCGGCTCGG	alt_6109_new	51	36	57	58	36	53	34	63	54	50
TCGCTAAACACCCGTG	alt_6109_new	6	2	5	7	11	3	9	6	4	7
CGGCGCTGGGTATTTG	alt_6109_new	18	13	21	11	18	25	22	13	8	12
ATACTTAATGGCATTG	alt_6109_new	111	93	146	99	83	103	84	100	100	86
TGGTGGGTACACTCTG	alt_6109_new	0	0	0	0	0	0	0	0	0	0
ATAGGCCTCTGTTGGG	alt_6109_new	10	12	13	8	7	20	14	11	13	17
CTTGAAAAGGCACGTT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
CCAGCCATTTCCCGGG	alt_6109_new	11	77	26	17	68	19	82	12	93	18
ATACTTGCGAGATTAT	alt_6109_new	56	21	45	43	35	33	38	32	38	30
TAAAGTCTCGACCGGG	alt_6109_new	72	40	78	53	50	42	47	63	55	47
AATATACACGGGCCGC	alt_6109_new	166	101	193	159	110	135	110	118	113	126
TTTCCGAGGAGTGCTT	alt_6109_new	54	64	53	62	46	58	52	46	46	55
AGTCTAGCTACGACTC	alt_6109_new	18	35	40	32	43	28	38	22	34	20
TTGATTCGCCAGTGGT	alt_6109_new	53	49	70	59	50	65	49	45	40	39
CCCTTTAAGTTTTTGG	alt_6109_new	5	12	16	7	9	4	14	6	18	6
GAAATACCATTCATCT	alt_6109_new	219	176	277	219	151	211	170	209	167	178
ATTCTAGCTCCAAAGT	ref_6109_new	98	58	89	78	64	81	63	72	103	76
ACTATAATACTGACGG	alt_6109_new	53	43	74	61	34	40	42	39	54	38
GATACGCGCCAGACCT	alt_6109_new	10	8	9	17	14	11	5	13	4	12
CGCTGTGAACTCCCAA	alt_6109_new	84	48	81	75	63	79	49	66	77	75
AAATAGGACCCTGCCC	alt_6109_new	0	0	0	0	0	0	0	0	0	0
ATGATGTATACGCGAC	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GTTTATTTAAAATTCA	alt_6109_new	170	136	225	181	165	183	154	164	156	191
ATCTTCCCGCAGCTTC	alt_6109_new	18	4	13	11	16	14	12	19	17	22
GATTTCCGTTTTCTGT	alt_6109_new	0	0	0	0	0	0	0	0	0	0
TTTCGTTGGTTCTCTC	alt_6109_new	39	23	37	32	25	30	30	34	34	26
CTCAGCGGTATCATTC	alt_6109_new	102	60	110	109	100	74	97	110	105	91
GGGATACCCTACTGCT	alt_6109_new	18	21	13	21	19	16	14	14	13	8
CCTTTGTTTTCCTTGT	alt_6109_new	22	13	27	19	11	29	13	12	16	27
CTTAAACTGTGTTAAA	alt_6109_new	29	19	36	27	25	21	30	15	27	17
CCAGCCCTCACAGAAG	alt_6109_new	24	161	38	32	181	33	171	43	200	28
TGGGGGCTTCGGTCAG	alt_6109_new	28	16	30	25	12	22	17	19	17	10
AGCTGTAGTGACCAGT	alt_6109_new	7	15	10	9	15	9	12	11	11	3
ATTTTTTACGAGTCCG	alt_6109_new	0	0	0	0	0	0	0	0	0	0
TAAATAACATATATGA	alt_6109_new	13	7	8	6	4	6	6	6	8	8
GGTTGCATGTCTCACC	alt_6109_new	202	152	269	221	147	218	161	219	196	205
TACACTTCTAGCGGAA	alt_6109_new	0	0	0	0	0	0	0	0	0	0
TCTTGTTAGTTTTCAG	alt_6109_new	43	42	62	52	43	39	39	53	49	46
CTACTGTAGGTTCACC	alt_6109_new	0	0	0	0	0	0	0	0	0	0
GCGTTCAGAGAATTGT	alt_6109_new	12	9	19	9	11	16	16	13	7	12
GATGATCGTTATTCAC	alt_6109_new	0	0	0	0	0	0	0	0	0	1
CCGTGGCGCAAGTTAC	alt_6109_new	24	27	18	30	30	19	18	21	34	19
GTGACGAGCCCATTAC	alt_6109_new	86	76	127	105	88	85	88	108	94	75
TATCAGCTCTTACACT	alt_6109_new	8	17	13	7	10	5	11	7	14	8
TTCCAGAACCCATCTC	alt_6109_new	0	0	0	0	0	0	0	0	0	0
TTTTCGTGTTCGGTTC	alt_6109_new	116	100	158	121	72	119	109	71	114	115
TTATCACATTATAAGC	alt_6109_new	40	38	49	48	60	37	57	42	47	42
TTTTATTCTATTCGTT	ref_3968_reverse	1	1	1	2	0	1	2	0	3	0
GATTTTCTAGTCTTCG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAGTACTCTTGCT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CAGAAGCCGGTTCCAA	ref_3968_reverse	13	18	22	16	17	10	20	16	24	10
GGAATGGTTGGCGTGA	ref_3968_reverse	6	9	11	7	10	16	14	3	11	15
ATCTCAGCTAGACCAG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGTCTCACTGTTT	ref_3968_reverse	2	1	7	4	3	3	5	2	8	3
TAGGAAAGGGTTTGCT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTCTTCGCTCTCA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTACTTGTTGGGACC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGAGTATTTGAC	ref_3968_reverse	4	11	8	12	11	6	14	4	19	6
TGTCTTAACTTGCCAA	ref_3968_reverse	1	1	0	1	1	1	0	0	2	0
GTGGTTATCCACATGA	ref_3968_reverse	43	53	78	74	53	59	59	47	49	56
ACTCGCGCTGTTGTTC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTCAAACTGCTGGCTG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TAAGATGGCGGCAGCC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCATGCGAGTTTC	ref_3968_reverse	27	31	31	26	31	18	23	24	26	24
AATCTTGCTTTTTACG	ref_3968_reverse	13	13	15	23	18	12	12	12	14	16
GCGGTCGAAAGTGGTA	ref_3968_reverse	62	58	72	53	71	58	72	75	77	47
TGGCTCCTGATCACGT	ref_3968_reverse	10	6	8	8	14	10	2	11	5	6
CGTCTATTGATCCAGT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGGTGGTTACGCC	ref_3968_reverse	59	43	69	52	66	47	44	58	53	58
CGATCGCGATACGTTT	ref_3968_reverse	33	23	37	29	46	17	22	35	37	31
CCTCAATCTATTGGTG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGTCTTTGAGTCT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTTACCAGCGCTTCAG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTATACAGGTTCGGCT	ref_3968_reverse	15	7	19	10	10	10	14	8	8	12
GCTCGTTCGGAACTTT	ref_3968_reverse	5	17	10	4	9	4	8	8	6	4
ATTCTACCTATGCACG	ref_3968_reverse	22	18	23	29	33	19	17	20	19	12
ACTCATGGCTTGCACA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTATCTAGTTCTCGCT	ref_3968_reverse	2	2	3	0	2	1	4	5	2	2
ACATACGCTCAGGCAC	ref_3968_reverse	24	27	40	33	22	35	29	36	36	19
CCCGTTTTGTACAGTG	ref_3968_reverse	10	11	15	8	17	12	10	7	16	9
TCCTGGCTAATACTTT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTGCCTGGAGGAC	ref_3968_reverse	29	42	35	31	30	35	44	24	55	29
CACTTTTTTTTGTTGT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTCCCTTCATCG	ref_3968_reverse	60	53	69	58	50	42	60	49	56	46
CGCTTTATTATCGTCC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTTCATTTGGTCT	ref_3968_reverse	37	26	31	24	26	24	35	22	34	26
CCTCGAAATACACTTT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGTATCTAATTTA	ref_3968_reverse	73	66	67	56	74	67	81	60	71	52
GCGCGTTATCTGCCGG	ref_3968_reverse	3	1	3	6	5	4	7	2	8	3
CGTGTCAACCTTTAGG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TACTTCCATTTAATAC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAAATGTACGTGC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTTGCGATCTTG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACTAGCCCCTTCGGTC	ref_3968_reverse	44	78	66	39	88	44	86	44	82	46
TTTTAAACTTAAGTTC	ref_3968_reverse	6	18	16	9	3	7	11	12	11	5
ATACGAGCTGAGTTCG	ref_3968_reverse	10	14	22	12	9	13	14	11	7	10
TCTGCGTTGTATACCA	ref_3968_reverse	6	3	3	6	6	3	12	8	4	3
AATAATGCTGTGTATG	ref_3968_reverse	41	53	59	66	58	51	54	40	55	60
CTCCATGTAATTAGGT	ref_3968_reverse	16	18	25	25	19	14	24	14	23	19
CGTTGATTACGTCCCG	ref_3968_reverse	50	35	43	46	32	44	40	41	32	42
CCATGATCATCATACC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TCAATTGATCGGGCAC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTATTTGCCTTAT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTAACACTTGTC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGGTGAGTTTTTT	ref_3968_reverse	13	9	15	13	18	11	22	11	18	11
TTCGCTGAAGTACTGC	ref_3968_reverse	13	15	22	18	9	19	19	18	29	13
GTGATACTTACACCTC	ref_3968_reverse	7	2	6	0	3	3	3	0	11	1
CGGGCCCGCAAGCTAT	ref_3968_reverse	76	67	83	69	65	73	79	63	62	57
CATGCCTCGATTTGCA	ref_3968_reverse	15	9	27	14	21	24	19	17	12	21
TAGCAATTTGATCTCA	ref_3968_reverse	29	19	23	37	31	25	32	33	20	19
GCGACCCCTGTAGTCA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGTCTTCCTGGGT	ref_3968_reverse	45	35	57	53	35	36	44	44	55	27
CAGCTGTATCTTCTAG	ref_3968_reverse	32	51	48	44	49	34	50	41	47	51
ACTGTTTGAATAATGC	ref_3968_reverse	20	15	17	14	19	12	17	13	16	17
AAGTACTGCCACTTGC	ref_3968_reverse	40	54	55	59	55	63	61	53	61	63
ACGATTTAAGTAAATA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGTCGTAATTATTGGC	ref_3968_reverse	57	57	79	60	51	53	71	52	74	57
GGGTGGGCAATCCTGG	ref_3968_reverse	49	50	49	69	48	39	53	64	70	55
ACATCGGGGCCCAAGC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CAGACATGGGTATTCC	ref_3968_reverse	9	13	17	14	12	8	13	14	15	16
TACTTAACGCATTTGT	ref_3968_reverse	26	32	40	25	32	24	34	33	34	21
CACCACGCGCGCCCGC	ref_3968_reverse	8	17	29	25	15	21	14	24	15	14
ATATACGCTCATGAGG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCCTAAGACTGTA	ref_3968_reverse	25	22	21	10	31	18	44	15	29	20
TGCGTAAACGATGTCT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GATGTTCTAGCTCATT	ref_3968_reverse	43	29	23	25	35	24	36	28	45	18
TTGGTTTTTACTAGAT	ref_3968_reverse	22	25	22	24	24	17	15	21	22	17
CCCCCGTGGTGAAGTT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTTCCTCCTATGA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCAGCAGTGTTAG	ref_3968_reverse	141	188	172	145	177	156	197	167	190	144
ATCCTTACGTCCCGTG	ref_3968_reverse	14	25	24	17	19	11	30	20	17	22
CTACGAACTTAGCCTC	ref_3968_reverse	15	11	11	11	31	10	22	10	26	8
CTGAGTCTTTCCTAGA	ref_3968_reverse	49	53	54	38	58	40	62	41	50	43
GGTTGTGTCGTGGTAT	ref_3968_reverse	73	78	72	61	75	72	90	69	77	51
ATAGTCTAGAGAGTAT	ref_3968_reverse	16	12	13	8	4	7	17	15	2	14
GCCCTCTCGGAATCTG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAATAGAAATCTC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTATGCACATCTAACG	ref_3968_reverse	1	7	1	0	3	2	5	2	8	0
CGTGCTTCACTCGCCA	ref_3968_reverse	17	15	29	26	26	30	33	25	20	21
AAAAACCCGTAGCAAA	ref_3968_reverse	129	115	163	120	132	132	147	144	130	107
GACGCTTGGCGCAATG	ref_3968_reverse	90	97	120	111	92	94	95	92	120	88
GAATTTCACCGGGCAT	ref_3968_reverse	6	4	7	6	2	1	6	5	9	7
GGAGATTTGACATTAG	ref_3968_reverse	14	9	11	14	3	12	15	10	18	4
GACGTCTTACGCTAAT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CCTATGTTGCTATAAT	ref_3968_reverse	33	34	47	46	36	22	33	31	32	35
TATTCTTATTAGCGTG	ref_3968_reverse	27	41	33	43	28	23	26	30	38	28
TTTATCCGGGGTGGGT	ref_3968_reverse	220	182	257	213	178	205	164	214	190	171
TTTATGGCCACTCTTC	ref_3968_reverse	69	58	78	74	53	54	49	53	57	53
TTGTACGACTGTGGTT	ref_3968_reverse	101	99	138	80	86	83	90	83	104	87
GGAATTGATGACGGCG	ref_3968_reverse	20	23	22	21	18	22	15	21	23	17
GGTGATATTTCTTTTG	ref_3968_reverse	25	22	25	16	18	19	13	24	10	11
CGTTGACACAATATTC	ref_3968_reverse	16	15	20	21	18	14	20	9	27	21
TTACTCCTGCTAGATG	ref_3968_reverse	18	18	18	17	30	19	15	12	19	24
TGATTTTGGCTTGCAA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACCACTTTCAGGTGTC	ref_3968_reverse	18	28	36	18	24	17	36	25	24	17
ATCTCCGGTACTAACG	ref_3968_reverse	37	31	42	36	39	22	44	35	24	29
ACAAGGTCCTCTAGTA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGTTTCATCAGTG	ref_3968_reverse	39	32	41	36	33	38	30	35	36	34
GTAGTGACTTTGGCTC	ref_3968_reverse	25	59	53	33	39	30	46	46	41	42
CCTGCCTTTGGTGCGG	ref_3968_reverse	29	32	38	38	19	31	39	28	31	29
GCCGATAGGAGAATTT	ref_3968_reverse	23	18	26	19	30	25	18	29	23	17
CTCAAGCCAGATCATG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
ATCGATAATATGCTAA	ref_3968_reverse	197	135	246	197	201	184	168	170	175	185
CACTTTTTTTTTTGTT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTACTCACCGCTGCGA	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TGTAACGTCCTGTTGG	ref_3968_reverse	76	75	90	68	54	55	51	70	63	57
ATCAAGTTTAATGAGG	ref_3968_reverse	39	33	40	29	37	30	29	29	42	26
TGGGCAAGTACTGTGT	ref_3968_reverse	11	14	5	16	12	9	14	13	11	17
GTAGTTAACTTTGATT	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
AATTAGCCTTCATTTC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGTGCCCCAGCAA	ref_3968_reverse	6	4	5	2	10	7	7	8	9	10
CACGGTCAGCGTATTG	ref_3968_reverse	16	17	20	14	19	13	22	16	19	14
TAATTTCGTAGCGTTC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTATGAACAGCTA	ref_3968_reverse	25	23	32	21	28	30	27	17	28	18
CATCAGTTGATAATGT	ref_3968_reverse	2	6	0	1	4	4	4	3	3	4
CTTTGTTATCTTCCAC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTGGCATGACACC	ref_3968_reverse	23	25	34	25	24	18	31	26	27	23
GATTTCTCCATACGCC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CTGGATCCGTCTGGCA	ref_3968_reverse	34	35	50	42	33	43	50	37	49	46
TACTCGAAAATTTAAC	ref_3968_reverse	63	58	83	76	78	79	78	67	59	60
TATTGGGACGGCGCGC	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTCTTTGCCAGAG	ref_3968_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGTGAATCAATGC	alt_13_RC	0	0	0	0	0	0	0	0	0	0
AGTCCCCGGCTATGTT	alt_13_RC	78	78	107	77	72	87	50	71	78	60
GCTTGCTGTTACGACT	alt_13_RC	39	28	42	27	22	38	44	28	29	33
AGGCGTTTAGTCGCCC	alt_13_RC	0	0	0	0	0	0	0	0	0	0
AGGCTGCGGGGGTTAG	alt_13_RC	0	0	0	0	0	0	0	0	0	0
CCGAGGCTTCCGATAT	alt_13_RC	99	65	135	108	93	93	76	96	81	85
CGTGTGATGTGCGGCC	alt_13_RC	58	54	75	47	45	58	45	63	44	51
GACCATATTATGTCTT	alt_13_RC	0	0	0	0	0	0	0	0	0	0
TGCTGTTCACGTACGT	alt_13_RC	41	32	54	53	29	43	35	26	30	45
GGGCTGACCTAAGACT	alt_13_RC	120	121	111	92	119	79	128	100	119	82
TCAAATAGCCAGGACC	alt_13_RC	64	40	76	53	53	52	42	65	48	53
CGCTCCTATTCATTAA	alt_13_RC	0	0	0	0	0	0	0	0	0	0
TGGTTCGGCATATTTG	alt_13_RC	9	3	18	3	3	9	6	7	2	1
GACTCGAAGTAGGAAC	alt_13_RC	43	44	62	42	43	28	50	35	37	38
GTGTTGAAATGCCATA	alt_13_RC	26	18	29	27	26	21	27	19	43	33
TTGTCTCGTTGGGGTT	ref_13_RC	62	75	95	84	86	65	77	81	92	53
CATCGCAGGAACTTCT	alt_13_RC	27	19	40	51	19	37	20	34	28	33
GTGGTTAACAAATCAT	alt_13_RC	92	72	84	75	73	77	84	66	93	87
TGCCAGTAGCGATCAA	alt_13_RC	6	5	7	9	9	9	5	6	3	3
CTCCTAGCTTCGTTAA	alt_13_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTCGTCAAAGTT	alt_13_RC	5	2	2	1	8	3	6	4	4	1
TTTTTGAGGCGATAGT	alt_13_RC	0	0	0	0	0	0	0	0	0	0
TGCGTCGAATATCAGG	alt_13_RC	27	33	29	34	31	18	35	34	46	29
CGTGGGACCTCGCATC	alt_13_RC	93	89	96	84	70	95	97	63	112	87
TTCGGGAAATATGGTT	alt_13_RC	3	5	2	3	2	1	1	3	5	3
CTCTAGCTCCGGGAGT	alt_13_RC	16	14	18	18	16	13	20	17	15	8
TCCTTGGTATAAGGGA	alt_13_RC	13	15	20	14	12	12	15	9	13	10
ATAGGCCGTCCTGGTT	alt_13_RC	5	4	2	3	6	7	9	5	9	3
CCTAACTCATTCACTT	alt_13_RC	31	49	45	48	57	30	47	50	50	35
ATGCAATCCGAGCATA	alt_13_RC	22	16	8	15	13	21	14	19	7	15
GTTCACATCGTTAAAT	alt_13_RC	0	0	1	1	0	0	0	0	0	0
CGGCGTGTTAGCATCG	alt_13_RC	22	16	18	19	18	11	12	15	26	22
CACTGGAGAAGACGGA	alt_13_RC	113	72	144	138	77	90	87	100	80	105
GCCAGACCGTAGTATT	alt_13_RC	10	29	19	22	23	15	25	24	28	14
GAAATTCAAATCCGGG	ref_13_RC	75	80	106	75	81	71	92	81	91	75
TTGTGCCAGTTTATGA	alt_13_RC	52	53	43	45	46	48	42	37	39	37
TAATGTATTTTCCGGC	alt_13_RC	105	82	115	89	73	104	95	88	77	97
TGCTGCTCCGTACCTT	alt_13_RC	99	116	174	123	110	124	97	88	115	103
TTAATGTCAAGCCGCG	alt_13_RC	0	0	0	0	0	0	0	0	0	0
AATTCCGACGTGAGAA	alt_13_RC	0	0	0	0	0	0	0	0	0	0
ACTCGCTTTCATAAAT	alt_13_RC	76	32	78	45	45	49	41	61	47	53
CTCATGCTTTTGACCT	alt_13_RC	18	14	8	24	17	15	21	19	12	18
GCTTGTTGGTACTGTC	alt_13_RC	6	2	3	7	4	7	8	4	5	0
CTGGGCCGATGCTTGC	alt_13_RC	15	27	22	15	28	17	35	0	35	9
CATTATATCTGGGTAT	alt_13_RC	19	14	30	23	9	19	6	21	21	19
TATTGACCGCCCTTAA	alt_13_RC	38	19	36	33	30	33	25	30	35	25
TATACTCGAGCACGCC	alt_13_RC	6	1	3	3	1	2	5	0	2	4
GCATCACGGGCAGATA	alt_13_RC	11	5	11	17	15	8	4	8	7	7
TTAACATCTTTCCGAA	alt_13_RC	29	25	43	36	31	25	27	23	24	30
TTTATGTGATCGATAC	alt_13_RC	39	50	65	57	56	50	40	44	35	40
GAAACTGATAGTATAT	alt_13_RC	23	25	35	22	24	30	18	33	16	16
ATTTTCGCAGTGGGTT	alt_13_RC	54	38	67	53	32	61	54	46	39	47
CGAGGTTTGTTAGGTA	alt_13_RC	43	24	31	33	23	47	21	45	24	31
CTGTCGTTCGAGTGCG	alt_13_RC	43	46	69	45	45	59	28	42	53	46
ACTTCCGCTTAACGTC	alt_13_RC	5	9	6	12	5	6	23	7	18	3
AAGCCGACGCTGAGTC	alt_13_RC	18	24	20	23	12	15	14	27	22	10
TGTCATCTGCTGGTAT	alt_13_RC	20	12	30	23	18	16	15	13	19	11
CGTGGTTAAGTTCTCT	ref_13_RC	79	66	129	100	72	80	84	83	99	70
TCCAATCTAGGCCTTT	alt_13_RC	63	52	83	87	73	76	72	72	75	86
GCCCTTATTCCCAAAT	alt_13_RC	124	108	184	153	100	124	90	135	113	121
CTATCTGCGAACCTAC	alt_13_RC	5	2	11	6	7	6	6	6	3	9
CTTCTCTTTCCTGGTG	alt_13_RC	9	6	3	3	5	10	7	11	4	10
CGCTATTCTCCTTGTT	alt_13_RC	0	0	0	0	0	0	0	0	0	0
CAGTCTCTACTAGATA	alt_13_RC	0	0	0	0	0	0	0	0	0	0
GCGTTGCTTTTTCGCC	alt_13_RC	0	0	0	1	0	0	1	1	0	0
TCTCGGAGCCTCCAAT	alt_13_RC	75	37	73	61	42	57	46	53	59	67
ATTTTAGATTGGACTG	alt_13_RC	77	73	74	56	62	61	80	84	68	65
GGAGAGTTAGTCGCAA	alt_13_RC	54	42	86	72	52	57	59	58	66	52
TCTCGAATAACGTTAA	alt_13_RC	51	59	54	47	43	46	58	39	41	46
ATTGGTTCAAGTGTGT	alt_13_RC	39	45	54	50	41	27	53	56	40	48
CAGCACACTTGCGCCC	alt_13_RC	8	34	3	7	29	8	52	3	46	2
TGGGCTGATCTTTCCG	alt_13_RC	0	0	0	0	0	0	0	0	0	0
GCGTTGCTTTTTCGAC	alt_13_RC	116	82	140	134	108	99	104	137	95	91
CCTAGAGTACGATTTC	alt_13_RC	46	50	51	63	57	47	57	41	49	51
GGGACTAAGTCTACCC	alt_13_RC	17	18	11	12	11	15	10	18	14	17
GCGTCATTGCACTCCC	alt_13_RC	5	7	3	2	8	0	10	2	7	2
CGGTGCGTCATGTATT	alt_13_RC	21	23	45	21	27	27	28	16	29	23
TCGGAGACATGTGTTG	alt_13_RC	35	24	45	40	42	27	47	33	31	39
TAAGATTTCTAGAACA	alt_13_RC	0	0	0	0	0	0	0	0	0	0
TGGCATAATTAGGGGC	alt_13_RC	41	31	34	33	29	29	30	36	26	33
TCGCAAGATGCCGGAG	alt_13_RC	73	50	79	57	55	70	31	44	35	47
TGTTTTAAACTTGCTT	alt_13_RC	16	13	34	24	18	30	27	20	17	20
GACGGCTAACACATAC	alt_13_RC	14	15	26	20	21	15	15	19	12	16
CTTAGTCTAATTCCGT	alt_13_RC	0	0	0	0	0	0	0	0	0	0
TCTTATACACCCTGTC	alt_13_RC	0	0	0	0	0	0	0	0	0	0
CCGGTTCTATCTCGCT	alt_13_RC	116	108	109	108	92	79	123	83	105	89
ATACCAATTCGGTCCG	alt_13_RC	21	34	22	25	25	27	25	20	18	22
CTAGTAGTACACAACC	alt_13_RC	34	62	37	34	68	32	75	30	65	45
ATTCTTTTTCAGATTT	alt_13_RC	15	4	19	9	3	17	15	10	15	9
AGTCTGGGTGCATTCG	alt_13_RC	0	0	0	0	0	0	0	0	0	0
AATGCCTGTACCTCCG	alt_13_RC	33	91	38	31	119	35	101	26	93	24
CAGCGCTTTCCAGAGG	alt_13_RC	11	8	12	10	14	13	15	12	9	10
AGGGTGTAAGTAGTCA	alt_13_RC	0	0	0	0	0	0	0	0	0	0
AGGCGATCGCCGCGGC	alt_13_RC	82	74	133	80	79	92	72	78	69	79
TGAGTCCGGCGGTATC	ref_13_RC	246	263	295	256	295	197	314	234	296	174
CAGAGATACTGTGGAC	alt_13_RC	0	0	0	0	0	0	0	0	0	0
ACGCATGGTTAGCCCT	ref_13_RC	22	32	32	35	35	24	43	24	34	31
GCGGTTCTACTTTGTA	alt_13_RC	5	6	9	6	10	7	13	7	8	7
TTCAGACTTCTTCGCC	alt_13_RC	27	29	41	41	22	32	39	30	51	35
GGAGGTTTCATCTGGA	alt_13_RC	35	23	35	35	20	30	15	30	24	29
GTACGTCATAGTAACC	alt_13_RC	10	5	16	16	13	14	13	13	8	9
TCTTTTGCCGCCAGGG	ref_5656_new	8	10	10	7	10	4	6	11	11	5
TCGAGCTAAGACGGGA	ref_5656_new	0	0	0	0	0	0	0	0	0	0
GTGGGCTCTTAATCTA	ref_5656_new	3	5	3	4	6	4	9	10	12	9
CATCGGTCCTGCATTG	ref_5656_new	26	50	24	21	45	18	46	24	45	19
AAAACGTGCGCCACCG	ref_5656_new	0	0	0	0	0	0	0	0	0	0
ATAGTAGATATATTGA	ref_5656_new	13	12	18	11	11	13	9	12	15	12
TCCTTCTTAAATCAAG	ref_5656_new	30	58	38	27	62	22	58	27	58	29
TTCCTTCTTGGCATAG	ref_5656_new	34	48	50	45	54	42	49	35	73	33
TCTGGCTAAACGCTAA	ref_5656_new	22	50	31	37	52	34	44	24	49	20
ATGCGGCTACACCGCT	ref_5656_new	0	0	0	0	0	0	0	0	0	0
CGGATACACCTTGTTT	ref_5656_new	0	0	0	0	0	0	0	0	0	0
GATCCTCTTCCTTCCT	ref_5656_new	8	5	6	8	8	9	8	6	6	5
TCTATTTCTTCGCGGC	ref_5656_new	19	23	16	17	19	30	22	22	30	14
TAGATGCGCAGAATTG	ref_5656_new	0	0	0	0	0	0	0	0	0	0
ATGTCACGTCTATTGC	ref_5656_new	74	30	81	95	38	85	50	82	50	75
GGACGATAGCGGACAT	ref_5656_new	4	7	7	0	3	5	2	1	8	0
CGACAATGTACACGAC	ref_5656_new	24	53	25	17	42	14	53	24	41	16
GCCGTTCGAGTTAGCC	alt_5656_new	31	49	36	28	53	23	70	30	60	26
CTCCGACCATTGAACG	ref_5656_new	5	5	7	4	10	2	11	4	9	3
CTGGAGTTAAACGGAT	ref_5656_new	10	23	17	8	22	10	28	10	23	22
GTAAATCAGGACTTGG	ref_5656_new	48	64	47	46	62	33	79	46	68	44
GTTATGGATGTGTCTC	ref_5656_new	32	89	64	39	78	64	90	62	87	49
GCCGTCTAATCGTCGG	ref_5656_new	0	0	0	0	0	0	0	0	0	0
CGGATACATCTCACGT	ref_5656_new	0	0	0	0	0	0	0	0	0	0
CCCGTTGTACAGTGTC	ref_5656_new	0	5	1	1	2	1	1	3	3	1
TGCCCCTCTTCCGTTC	ref_5656_new	0	0	0	0	0	0	0	0	0	0
TCGGATGTCCCACGGC	ref_5656_new	0	0	0	0	0	0	0	0	0	0
TTACTCCGTCCAGTCG	ref_5656_new	8	9	13	6	16	10	21	5	13	9
CATGCCTCTCTACTCT	ref_5656_new	52	85	59	61	83	53	61	61	69	52
GGATAGCTGCCAGAGG	ref_5656_new	1	0	0	0	1	0	0	1	0	0
TTTGCTTTCTTGCGGG	ref_5656_new	99	151	113	85	147	79	146	89	151	68
AAGGGAGTTTCAACAT	ref_5656_new	14	33	21	16	40	12	42	10	25	13
GTGGATGTATCAAAGT	ref_5656_new	11	12	8	9	20	6	19	10	23	5
TCCCCAGTCTTAGTTT	ref_5656_new	0	0	0	0	0	0	0	0	0	0
TGATTCAGCTCACTAA	ref_5656_new	0	0	0	0	0	0	0	0	0	0
CTCACACAACGGTTGC	ref_5656_new	0	0	0	0	0	0	0	0	0	0
GCGGGAATCCGGCGAG	ref_5656_new	101	155	98	97	157	90	149	105	162	87
CATGGTCTCTCTTACC	ref_5656_new	10	59	11	15	58	15	48	11	54	12
GTTGCAGGCCCCTGCT	ref_5656_new	0	0	0	0	0	0	0	0	0	0
GCTTAATAGCGTCCAG	ref_5656_new	13	27	17	13	35	25	25	11	24	6
TTATTCTTGGCATCAT	ref_5656_new	0	0	0	0	0	0	0	0	0	0
CGATTAAAGTGTTATG	ref_5656_new	18	39	34	15	36	17	37	17	38	13
GAATCTTCTATGGACG	ref_5656_new	37	56	36	30	62	28	42	27	48	35
TCGTAACCTCTATCCA	ref_5656_new	16	34	23	21	34	32	40	27	57	22
CTCGCAACGTTAGGTA	ref_5656_new	6	21	4	9	8	9	13	12	17	6
GCCATTATTTATGGCT	ref_5656_new	0	2	3	4	2	0	2	0	3	1
TAAATCCTATAGAGCG	ref_5656_new	53	81	71	59	74	58	102	39	78	50
TGGGACATTAGCATGA	ref_5656_new	11	11	15	11	20	5	21	9	19	7
TCCGCTGACGCTATTA	ref_5656_new	0	0	0	0	0	0	0	0	0	0
CACTTAGTGGCCACCC	ref_5656_new	4	30	12	12	31	6	23	9	24	10
ACTGTTTTGAAAGGAC	ref_5656_new	11	11	3	9	15	8	25	9	19	5
TCCTAGACGATCCGAG	ref_5656_new	0	0	0	0	0	0	0	0	0	0
TATAGTGTTGAAAACG	ref_5656_new	25	27	40	20	46	22	42	24	52	19
GACCAACTACAGTATA	ref_5656_new	19	20	35	22	35	15	28	19	32	21
CGTGAGATCTTTATAA	ref_5656_new	56	74	46	50	75	46	76	33	71	36
CTCCAAATTGTGATCC	ref_5656_new	0	0	0	0	0	0	0	0	0	0
CTGAAAACGCTTTTGC	ref_5656_new	0	0	0	0	0	0	0	0	0	0
GTATGCGCTTACAGAG	ref_5656_new	0	0	0	0	0	0	0	0	0	0
TTTCGATTTTTAAACC	ref_5656_new	18	24	28	20	20	22	27	13	28	14
CAGTTGTTCCTCCTGT	ref_5656_new	14	40	31	25	47	23	52	32	59	17
TAGTTGCTCTATCTCA	ref_5656_new	51	68	45	51	67	42	64	28	66	29
CTCTGAATGACCTCAT	ref_5656_new	133	128	97	110	132	100	169	101	181	110
CCGTTTGCTGTCTGAC	ref_5656_new	28	53	20	23	40	22	43	23	28	16
TATCTTAGCCTTTATT	ref_5656_new	18	35	18	13	52	17	47	22	49	21
AAGGATGATACGTTCA	ref_5656_new	11	10	21	8	16	11	10	5	16	12
TGGAATGCACAGTTCA	ref_5656_new	100	172	109	108	157	95	165	94	194	92
GGCCGTCGGTCTAGCT	ref_5656_new	10	5	7	15	7	11	6	11	11	7
ACGTGTTACGTCGTGT	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CTGCAATCATCGTTTG	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CTCACAATTCCGTGTT	ref_3859_missing	147	136	166	145	149	106	162	143	157	123
TACATTTGCGATCCTG	ref_3859_missing	16	19	13	15	21	18	19	6	12	14
CCCCTCTGCGCTCTCT	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
GCAGTCAACAGGTTCC	ref_3859_missing	50	66	61	43	78	47	80	55	67	35
TCTCACCCCTACGGAA	ref_3859_missing	79	88	75	82	90	86	83	75	97	60
AGTGTCCAAGTGGCGG	ref_3859_missing	6	3	5	12	8	7	6	4	8	10
GATGTATTCACAGGAA	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CTTGTCATATTTCGTT	ref_3859_missing	30	33	29	37	34	25	25	30	30	29
TACCTATTGCTTTCTC	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
GCCGATATCAACCCAT	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
AATCCAGAGGGCGCGG	ref_3859_missing	13	8	16	10	20	13	14	14	14	11
CCTGTTTTTTACTCTT	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGAACTGACACC	ref_3859_missing	136	158	174	148	171	143	189	139	193	113
TATGTCCGAGGCGCGA	ref_3859_missing	26	16	21	19	23	10	24	23	29	22
TGTACCCTTAGGAATG	ref_3859_missing	4	12	13	4	10	1	12	7	11	5
ACGCGAGGGAGAGGCG	ref_3859_missing	9	11	11	3	7	9	6	6	5	5
GCTGCTAATTTATCCC	ref_3859_missing	8	2	1	6	6	4	3	1	2	3
TTTCGGCTGAAGCGGA	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
GTGTTCCTACGCCAGC	ref_3859_missing	2	5	3	6	4	6	7	1	5	1
TTGTCGGGTCCTGGTG	ref_3859_missing	52	56	52	45	63	56	41	42	46	41
GTACACTCTCTTTACC	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
ATTCGCGGATCTATTG	ref_3859_missing	41	47	55	50	49	38	40	41	58	42
CTGTTACACCGATGTT	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CTGCTCCCTCGCATTG	ref_3859_missing	10	10	10	7	12	12	4	12	9	8
CGGCCTCATTCTGGTC	ref_3859_missing	28	35	30	24	34	40	41	38	33	38
ATGGCGTCCGAACTGC	ref_3859_missing	48	43	48	53	58	39	52	37	41	34
TGCAATTCTATTTTCT	ref_3859_missing	23	23	16	32	24	16	25	33	30	31
CGTGTGGCCCTTCTCG	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
ATGCCCCTTTAGATGC	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CTCGTCATTTCGTACT	ref_3859_missing	16	29	28	29	31	25	30	24	26	19
TCGTATCCCATCGAGT	ref_3859_missing	114	150	177	141	141	148	156	119	163	132
TCGCCCATGTGCATTA	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
GGCATAGCGGCTCAGC	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
TTCTACGCTTCTCTAA	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
TGGCTCTTTGGTTAGA	ref_3859_missing	6	22	21	15	25	17	22	15	27	17
CCCGCCTGGGGTTGGG	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
TCCAGACCGGCCTACC	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTTACTCCCTCG	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
TTCGTGTTTATTTAAG	ref_3859_missing	9	1	4	4	6	3	5	2	2	2
TAGTCTCCATAGCGTT	ref_3859_missing	22	35	25	28	39	15	25	18	29	32
TTCGTGACTTCAGGCG	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
AGTGATGGTTTTCTAT	ref_3859_missing	28	38	40	25	30	39	41	41	41	22
GGCCAGCAAGTCCTTA	ref_3859_missing	1	0	0	2	0	1	0	0	1	0
CGCGGACCTGCTCTTA	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CCCGCGCGCTTTGCGG	ref_3859_missing	12	18	28	26	23	17	25	21	26	16
GGATTCTGCCATAGAC	ref_3859_missing	16	14	23	23	29	21	20	19	23	19
CGTATCTGTTGTAAGG	ref_3859_missing	20	24	19	16	21	15	17	23	27	18
TAACCGATCGTCCTCA	ref_3859_missing	9	11	15	8	7	8	13	5	24	6
ATTATTCCCCGTTCCA	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
AACAGCCGGTCTTTAA	ref_3859_missing	3	5	4	6	8	1	5	3	6	2
TTGTACCATTATTTAT	ref_3859_missing	138	189	184	154	198	132	164	136	188	138
ATCTCGGTGAATCCCT	ref_3859_missing	18	30	17	24	20	14	26	18	23	18
TGCACTCTTGTTGTGG	ref_3859_missing	249	300	286	274	335	217	328	202	315	216
TAAGCTCTTCAGTATC	ref_3859_missing	5	10	2	3	5	1	1	7	5	6
ATAGATACTGAAGTGG	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
CGTACCAATAGCAGGG	ref_3859_missing	52	64	101	66	79	75	78	79	72	51
CAGCGCCGCCTTAGTG	ref_3859_missing	14	19	13	25	26	9	17	17	36	4
GTATGAGATGTCGTTG	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
TAATTGTGTCCTTGGG	ref_3859_missing	10	8	11	8	11	7	5	15	7	3
GGGGGCGGCTGTTATT	ref_3859_missing	34	21	32	22	27	34	21	16	36	18
CTCCGTGCACTCTGTC	ref_3859_missing	0	0	0	0	0	0	0	0	0	0
GAATTAATGTTGGTTT	alt_2205_fdr	126	64	166	158	85	152	81	138	70	157
GAAATGTCACGATTTT	alt_2205_fdr	119	58	188	143	65	132	68	123	63	117
TTTCGACCTCCGACGG	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TACCACAGTTCTCTGT	alt_2205_fdr	37	27	48	54	20	35	30	36	29	29
TTAGCATATTGTTCTT	alt_2205_fdr	141	80	204	184	87	200	92	172	97	171
ATGCCACCTATACTAT	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TTACACGTCAAGTGAC	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
CAAAAAAACAAAATTC	alt_2205_fdr	31	8	30	41	6	29	18	24	15	26
GAAGCGTCTTTTCTTG	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTTTCCACCGTT	alt_2205_fdr	18	4	27	16	12	16	10	20	10	17
CACATTCGGTTTCATG	alt_2205_fdr	68	27	92	89	33	69	31	72	33	63
CAAGAGGAACTATGTA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
CCCAAGCAATTATTCA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCAACGTAGCTA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GAATTGGCCCTAAGCG	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGCTTCTTGTACA	alt_2205_fdr	0	0	1	0	0	0	0	0	0	0
CAACTTATGGATTTTT	alt_2205_fdr	200	88	241	241	105	178	82	171	97	211
AATCTGTTCTTATATT	ref_2205_fdr	177	61	179	170	65	133	82	155	75	167
ATGGGGTTCGCCTATA	alt_2205_fdr	82	30	87	89	53	72	38	79	35	69
TGTTTTAAGGATTGCC	alt_2205_fdr	572	278	745	630	259	568	270	525	313	489
CGAATTTTGTTCGTGC	alt_2205_fdr	145	67	192	166	83	145	65	142	84	144
TGCTATGAATGAGTTT	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAGGTTTATGTGA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ATACTGGATCTAAAAC	alt_2205_fdr	35	13	39	23	20	33	20	36	34	38
GTGCAGGACTGCGTTG	alt_2205_fdr	241	117	371	321	156	259	139	257	131	242
TCCTTTCCACCTATTT	alt_2205_fdr	81	68	115	84	80	80	86	85	67	71
ATAAAACGCTCGTCGT	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
AACTCCCATACCGCTC	alt_2205_fdr	54	23	55	48	22	52	25	43	40	57
GGACCTGTTCTCGACT	alt_2205_fdr	18	17	27	33	15	22	14	31	20	12
GTTTCATAATTCCTTG	alt_2205_fdr	12	7	16	20	10	14	13	19	7	7
TGACTGATGTTATGAT	alt_2205_fdr	28	10	46	23	14	27	14	25	26	23
AGCCTTAATTTTGACG	alt_2205_fdr	184	86	244	187	78	189	125	179	103	176
ATTGTTTGTGATGTAG	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GTGTACACGACGAGCC	ref_2205_fdr	150	104	198	149	114	148	128	122	99	160
AGGTAGGAGATTGCTA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
CACATTTGCGCAACAA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TCTACGTGTTCATGCC	alt_2205_fdr	47	28	63	65	21	49	26	47	19	42
TTACCTTCTGCCGTCT	alt_2205_fdr	3	20	2	1	27	2	17	2	20	0
CATAGTCTCTGTGTAA	alt_2205_fdr	25	20	24	26	17	25	13	26	17	20
ATCCTTAGCTTCTGCT	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCATTCCGTGGGT	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCTCCATTGCGAA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGTTAACGGTTGC	alt_2205_fdr	70	46	117	96	36	82	48	73	50	59
ATTTTTAACGCGCCAT	ref_2205_fdr	174	108	268	187	113	175	119	182	117	174
CGCTTCTAAGAGTAAG	alt_2205_fdr	8	4	8	3	2	7	3	7	1	4
GCCGGCGTATGGAATA	alt_2205_fdr	109	55	158	183	60	114	75	131	75	117
GTGACGTTTGCGCTCC	alt_2205_fdr	19	12	26	28	7	17	13	23	17	28
TCGTGGGCAATTATTT	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GTATCACCCGCGGTCA	alt_2205_fdr	23	17	34	23	9	28	16	28	16	27
CTAGCACGTGTTGGTC	alt_2205_fdr	23	8	21	16	8	21	8	12	8	15
TCGTTTGTTCTGCGTG	alt_2205_fdr	185	93	203	174	65	151	125	143	106	137
CCCTGACAGTCCCTGG	alt_2205_fdr	513	373	645	540	335	503	356	452	377	433
GTCCTGCTACACTCTA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TCATCGTAATAACGCA	alt_2205_fdr	120	66	149	137	74	115	69	114	79	99
ATGTGTGGCTTCTTGG	alt_2205_fdr	18	7	31	18	13	29	16	26	20	18
TGAATCATCGCCCGTC	alt_2205_fdr	170	69	160	159	60	140	110	134	85	104
TTAAGTTTATAGTACA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAGATTCGTAAGC	alt_2205_fdr	28	13	46	36	14	39	13	31	5	21
CCACTCCAGCAGGTTT	alt_2205_fdr	31	7	31	25	11	24	12	25	20	19
TATGCGCATAGTTATA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTAGCGTCGGACC	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ACGCTGCTCCGTAGTA	alt_2205_fdr	5	3	3	4	4	2	8	3	4	3
CCGCCCGGTATCATCC	ref_2205_fdr	91	67	111	78	46	61	39	84	60	98
ACGTACAAAGTTACAG	alt_2205_fdr	45	26	53	57	25	39	20	53	14	48
TATGTGCCCGTATGTC	alt_2205_fdr	9	2	8	16	4	9	10	14	3	13
ACAATACTTTATCGCC	alt_2205_fdr	32	10	31	50	12	31	11	35	11	26
TTGCCGTCCGGTCCTC	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCTCACAGCACTC	alt_2205_fdr	129	64	150	104	52	116	68	114	53	119
ATGAGTCATGTCTCGA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGATCCTAGTACA	alt_2205_fdr	53	62	66	63	74	52	58	60	61	55
GCCGACAACATCTAGT	alt_2205_fdr	102	55	112	92	43	88	38	65	47	84
CAATCGTTATAACCTT	alt_2205_fdr	220	118	293	237	94	209	115	220	112	179
CCCCCCACCAAGGTCA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGGTTTAAGTAGC	alt_2205_fdr	117	48	142	99	60	86	39	96	45	96
AAGTGAGCAGCCGGCT	alt_2205_fdr	167	61	208	165	87	152	87	172	68	157
ATTAGTGTTTCTCAAT	alt_2205_fdr	263	140	320	284	122	258	135	212	128	173
CAAACAATCTCTCCAA	alt_2205_fdr	47	19	47	53	26	32	17	35	18	24
TATCGTGTCGTATCGG	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ATTACTTTCGTTCTAA	alt_2205_fdr	139	60	185	150	68	121	64	126	59	113
GCGGTAATCGTGTCTA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGGTACTTGGAGG	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTGCTTTTAGGA	alt_2205_fdr	57	28	56	61	30	55	27	59	25	52
CCAAGCCCGTGAACTT	alt_2205_fdr	32	43	31	23	63	27	47	29	43	22
CCTAGTGGCGCGCAGG	alt_2205_fdr	238	103	313	280	91	224	100	240	111	215
TACCCTGCGTCTGAGG	alt_2205_fdr	35	27	55	54	29	29	29	45	31	43
TTCGGTCTGAATGACG	alt_2205_fdr	5	12	8	5	6	11	18	3	14	4
TTCAAGACACCAGACA	alt_2205_fdr	139	72	178	159	64	133	87	120	74	97
GCCCCTTGGGCATAAT	alt_2205_fdr	36	24	65	33	24	44	16	38	22	22
TCTTGCTTCTTGTACA	ref_2205_fdr	843	375	1025	983	423	775	384	872	425	779
TCGGTAGCATTCTTGG	alt_2205_fdr	12	23	22	25	18	16	15	18	22	18
GCTGCTTCATCTGGAC	alt_2205_fdr	52	26	53	41	34	54	19	50	24	28
CAGTACAATCACTCGC	alt_2205_fdr	60	40	59	62	41	54	43	46	51	58
AACTGTGTAGGGTCCC	alt_2205_fdr	13	3	9	8	8	10	3	6	8	7
ACGGTCCATGTTGTTC	alt_2205_fdr	28	27	35	25	28	21	32	25	24	25
CCTGAGATACGTGCCT	alt_2205_fdr	53	28	70	60	23	37	29	52	29	47
TGTGTTTCCTAGAGTC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CACGTGATTACTTTGG	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTTAACACTTTAT	alt_2205_fdr	31	7	17	25	22	22	12	13	9	27
TTTTGGCAGGCGTAAC	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTTAAACCTGAGTCGA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCACCAGCCTTTG	alt_2205_fdr	15	7	16	27	9	24	9	15	8	20
GTATTGTCTTGACCGG	alt_2205_fdr	9	7	21	10	4	6	5	14	6	9
TCTATGCGCTTCCTTC	alt_2205_fdr	140	48	128	130	57	121	61	97	56	100
TACCGTTCGTGGGGTG	alt_2205_fdr	48	28	71	63	29	53	23	51	22	50
TGTAGTGGTACGCAGT	alt_2205_fdr	18	12	23	15	7	22	14	20	17	14
TGCTACTTATTCATTT	alt_2205_fdr	112	46	163	113	46	95	52	114	53	96
GCTACTTGTCTTGCGG	alt_2205_fdr	86	58	82	84	54	75	48	75	52	83
GACGCCCTTACGGTTT	alt_2205_fdr	54	41	56	64	30	45	28	62	31	53
CGATAACTTAGGGGGT	alt_2205_fdr	339	190	463	393	176	330	184	390	193	335
TCTAGCTTCTTGTACA	alt_2205_fdr	0	0	2	0	0	0	0	0	0	0
CCTAGGTTTATTGTGC	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
TAACTCGAGAGATATA	alt_2205_fdr	8	1	10	13	7	17	4	6	3	8
CGTCTTCAAATAAACC	alt_2205_fdr	187	84	249	204	96	190	77	191	105	167
CCCGATATGCACCCGA	alt_2205_fdr	88	60	145	131	59	105	62	105	89	96
AATCTCGACTATCATC	alt_2205_fdr	203	106	230	183	107	192	131	178	104	184
GTTTTCCTGGGGCGCG	alt_2205_fdr	22	8	24	31	10	31	25	35	15	27
TTTTGGACGTGAGGCA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
ACGCTATGTGGGGTAA	alt_2205_fdr	0	0	0	0	0	0	0	0	0	0
GCCTACTACTTGGTAC	ref_2272_fdr	7	4	6	5	7	9	3	4	12	6
CATTTAGTCTTAAGCA	ref_2272_fdr	14	26	22	19	38	12	26	13	29	17
AAGTGGGGTAGTAGGT	ref_2272_fdr	110	93	127	89	78	82	94	74	101	67
ATTTTCTCCTACAAGC	ref_2272_fdr	40	48	41	40	42	46	37	40	26	25
TTATAAGCCGGAAAAG	ref_2272_fdr	63	63	64	65	64	62	59	54	65	51
AATGCGGGGTATGACT	ref_2272_fdr	2	1	6	6	4	7	3	4	5	3
AAATCGAATTGGCTAC	ref_2272_fdr	31	29	36	28	37	30	38	30	28	31
AATCCAACCCTGGGAT	ref_2272_fdr	27	13	50	21	19	18	21	25	13	24
CTATTTTAACTCACTT	ref_2272_fdr	14	8	9	16	7	16	11	9	8	8
TCTTCCGCATGTTAAG	ref_2272_fdr	37	40	48	26	36	29	50	50	38	28
TATTTGTATAGGCTTG	ref_2272_fdr	68	39	83	57	48	62	47	54	68	46
TTTTCCATTGCGCGTG	ref_2272_fdr	84	60	69	80	61	71	60	70	73	58
AGGTTACTGCAACCGT	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TAGATTGCAATATCCC	ref_2272_fdr	41	47	46	28	33	24	52	35	31	27
CGATCCTCCTTCTTTT	ref_2272_fdr	24	10	24	30	23	9	13	12	9	20
CTGTGAGGTTTTTGCC	ref_2272_fdr	106	98	89	76	93	65	85	66	70	92
CTTGCGCCCGTTTTTA	ref_2272_fdr	100	113	146	107	130	99	100	100	91	97
GTATGCTGGTGATTCT	ref_2272_fdr	3	8	14	7	11	7	5	8	12	6
TCGAATGCATATGGAG	ref_2272_fdr	21	16	27	8	16	20	12	10	8	22
GCTTACCGTATAGTCA	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TGCGATGCTCTAACAT	ref_2272_fdr	85	68	109	98	79	77	83	78	89	63
GTGATCTTAGAGATTA	ref_2272_fdr	71	76	96	91	83	75	74	68	81	66
TTCCCTAGGTGCCGCC	ref_2272_fdr	27	26	47	40	27	24	34	25	28	26
ATCGGCCTTAATCTCG	ref_2272_fdr	29	31	47	23	22	26	32	27	30	21
TTCCCTGTTGTGCTCC	ref_2272_fdr	9	7	13	7	12	4	14	14	11	13
TCCGCATATGCGTTTA	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
GGCACTTTGTGTCTTT	ref_2272_fdr	32	34	43	40	33	38	52	28	35	26
ACTTATAATGGCTGGT	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TTCCATAGTTCGGCTT	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGGTCAAGAGCCG	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCCATCCGGGTCG	ref_2272_fdr	44	24	43	57	42	48	34	44	36	29
GCGCACTTAATTCAGC	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
AGTTATCCCGCTTGAC	ref_2272_fdr	57	44	51	46	42	43	37	39	42	35
TCGGTTCTTCAGATTC	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
GGGTAGATTTTGTGAC	ref_2272_fdr	19	16	31	20	8	25	23	20	9	23
CACTTCGGACGGCAGC	alt_2272_fdr	80	102	121	111	119	85	115	97	105	78
CCAGTCCAACCATCGG	ref_2272_fdr	70	62	90	61	86	55	69	50	89	42
CTCAGCTGGGTTGTTT	ref_2272_fdr	8	9	18	14	15	11	8	5	14	7
GAACCATGAAGAGAGT	ref_2272_fdr	5	4	7	8	3	7	7	7	6	5
GTTGTGGGGACTTGTG	ref_2272_fdr	155	159	198	155	164	151	160	138	161	127
CAGATGCCGCGCGCCT	alt_2272_fdr	37	36	43	42	56	51	48	30	50	24
TTAATTTGTGCATTAT	ref_2272_fdr	74	55	86	67	70	80	85	80	67	59
GCATTTATGCTGAGGT	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGGGTTTCTTGAA	ref_2272_fdr	26	29	34	37	21	28	28	28	23	32
TGTTCGTTGAGTGATG	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
CTACACTTATCGCAGA	ref_2272_fdr	181	167	224	184	171	146	142	158	153	168
TGTGTTCTCGGGATCC	ref_2272_fdr	2	2	5	6	3	1	6	1	0	3
GCGTGTCGTCTCTTCA	ref_2272_fdr	3	16	8	4	10	5	13	6	9	1
CAGGCGTTTAGATCCA	ref_2272_fdr	13	8	8	14	4	13	6	12	6	4
TACTGATTGCCCCACC	ref_2272_fdr	70	75	100	97	67	80	70	81	83	63
CCTGCCCCACCGCGGG	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTTACTCATCAGC	ref_2272_fdr	1	0	1	0	0	0	0	0	0	1
TAGTTTCATTCATGTG	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
AATGTTCATTTCATTT	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TCACGTGGGGGTTGGC	ref_2272_fdr	16	17	17	20	8	27	15	22	11	15
CTACGTTGCCATCGCC	ref_2272_fdr	58	51	62	60	36	53	48	43	38	50
ATCTGAAGTTCCCAAA	ref_2272_fdr	40	57	57	66	36	42	51	45	62	39
GTTGTTGCTATCCCGT	ref_2272_fdr	41	49	72	56	44	63	29	30	33	51
ACAAGAAGGGTGCAGC	ref_2272_fdr	40	37	45	43	38	50	27	49	50	44
TTTCCAAGTTAACAGC	ref_2272_fdr	27	23	41	23	24	18	31	27	18	25
TCAATTGTATACATCG	ref_2272_fdr	67	69	82	77	74	49	48	77	70	62
ACACGCTTCTAGGGAG	ref_2272_fdr	27	16	18	25	21	23	25	26	21	18
CTTTCTATCAATGTCA	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
ATGATTTTTAAAATAC	ref_2272_fdr	123	107	146	125	113	98	103	125	95	101
GATATTACCGAGATGG	ref_2272_fdr	201	144	224	179	117	167	157	170	161	142
GTCCCGGTTCATAGAA	ref_2272_fdr	50	35	55	58	38	43	59	49	49	46
TTCCCATCGAAACATC	ref_2272_fdr	35	23	34	33	32	33	32	21	24	26
TCCGCACCGTGCTTGC	ref_2272_fdr	14	12	9	9	20	10	11	18	26	7
GTGGTGGAATGCGCAC	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTAGCCTGATCA	alt_2272_fdr	36	47	60	55	31	43	58	53	59	45
GTTAGATCTGCCCAGA	ref_2272_fdr	11	8	4	9	15	8	14	11	13	7
TTGGCAAGGGTCTCCG	alt_2272_fdr	115	106	167	128	111	100	120	120	117	107
GGTGTTCCACATGCAT	ref_2272_fdr	3	9	5	7	6	3	4	3	4	4
CATCGGTCGCTTAGAC	ref_2272_fdr	68	69	74	66	80	69	101	64	85	76
ACACTTGGGATCAGGG	ref_2272_fdr	79	72	86	94	92	89	78	60	81	66
GTTCCAAAATTTTCTT	ref_2272_fdr	18	13	21	25	19	22	12	21	19	17
GTAATCCTATATTCGG	ref_2272_fdr	41	39	40	41	46	35	36	30	30	32
CCGGTCCACGGTCCAG	ref_2272_fdr	12	11	16	10	6	15	12	17	10	16
TCGTCTCCCATCCGAG	alt_2272_fdr	78	75	104	93	65	80	66	68	76	82
ACTAGGGTTGCGTGGA	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGGTGTTGACTA	ref_2272_fdr	8	33	8	8	16	9	18	5	18	14
GGGGGTCGCCAGGTAA	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
GTGCGTATGCTCATAA	ref_2272_fdr	55	55	64	56	64	37	66	40	66	43
CGGCACCTTTGGTCTT	ref_2272_fdr	63	70	73	72	61	80	54	59	70	62
TTTAGCGTGATCTCCC	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
GCTATTCTGACTGTAT	ref_2272_fdr	21	8	14	16	13	14	10	21	8	13
CCGTCCACGGTTAATT	ref_2272_fdr	69	74	93	77	85	72	88	70	99	81
TCACTCGCCCTGTCTC	ref_2272_fdr	3	3	3	6	5	5	8	8	6	3
CCATTTAACTTGGTGC	ref_2272_fdr	103	112	132	116	122	91	97	108	101	98
CTCGCCTTGTTTGTAC	ref_2272_fdr	3	6	3	4	4	6	9	7	10	3
GATCTATAGCCGGTTG	ref_2272_fdr	33	23	33	36	35	21	36	26	43	34
GATCGCCGCTCTTTTG	ref_2272_fdr	24	28	32	19	21	21	21	20	29	21
TGTCTATGACGCCACT	ref_2272_fdr	97	75	140	112	87	92	77	101	89	76
AAAAAGTCGATTTCGA	ref_2272_fdr	27	17	37	23	27	19	15	38	26	22
GTGAAGATATTGGCTC	ref_2272_fdr	95	85	104	86	93	86	100	79	92	87
TGATCGTCCTTCGTCC	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTCACCGGGGGCG	ref_2272_fdr	41	39	52	47	39	34	30	44	57	46
TTTAGAAGTGGTCAGG	ref_2272_fdr	68	41	70	73	68	62	68	47	66	55
AACGAGTTATCTTACA	ref_2272_fdr	1	2	3	0	0	2	3	1	0	3
AGACAGCTGTTAACGT	ref_2272_fdr	48	35	64	50	49	39	63	41	55	48
CTCTCTCGTAGCCTAA	ref_2272_fdr	62	60	76	70	48	56	57	51	67	50
TGTCTTGGTATTTGAG	ref_2272_fdr	162	168	231	165	185	141	149	120	189	129
TAGTAAGTGGGATAGA	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
ACATCTCGTCCTGGTT	alt_2272_fdr	159	140	153	165	125	148	138	137	109	125
GCTCACCTTGTCCCAC	ref_2272_fdr	13	19	21	25	18	21	19	16	24	6
TATCCACGGATTAGAG	ref_2272_fdr	8	1	4	5	0	4	1	2	6	2
GTAGTTTCCACGAAGT	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTCTTCAGAGGAA	ref_2272_fdr	9	7	12	15	6	9	9	4	14	4
ATTCAGTGTCGTGCGT	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
TGCGAGATGATTGATG	ref_2272_fdr	27	13	21	16	26	22	19	20	19	18
GGCTGTGGTGGCAGGA	ref_2272_fdr	0	0	0	0	0	0	0	0	0	0
GTACGGTCCGACTTCT	ref_5019_upstream	11	7	10	8	6	7	4	5	6	13
CGTCACCGAAAAAATG	ref_5019_upstream	39	47	47	26	57	23	52	33	56	36
CGATCTTCCTTATATG	ref_5019_upstream	122	118	142	116	123	114	129	145	148	130
CTCTGGTCTCTACCAT	alt_5019_upstream	171	213	199	167	226	158	244	128	222	172
CACGCTTACGAGGAAG	ref_5019_upstream	59	101	61	66	98	54	106	71	114	68
GTTCGTCTTTTGCTTA	ref_5019_upstream	22	46	30	41	39	35	31	27	37	35
GTGTTCATTCCGCAAT	ref_5019_upstream	24	44	28	42	38	32	40	27	50	32
AATTATGCCGCATTAA	ref_5019_upstream	26	22	34	19	20	20	22	23	24	22
TTCACGGCATTTTTTG	alt_5019_upstream	54	63	75	54	53	57	59	36	68	45
GGACAAAACCTTACCA	ref_5019_upstream	15	32	17	13	33	11	30	13	23	11
TATCAAGTCGGCTTGT	ref_5019_upstream	293	380	373	295	290	301	426	252	397	278
CTTGTTTTTTAAACGG	ref_5019_upstream	57	87	66	58	70	48	90	46	97	58
CGGGTATGGAGTCGAA	ref_5019_upstream	62	103	81	61	86	60	96	73	106	52
GTCGAAGCTAGCTTCC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGGTCTATCTTTA	ref_5019_upstream	473	538	539	484	521	432	530	478	574	383
CTGGCCTGACCTTGTA	ref_5019_upstream	24	26	15	16	20	14	28	9	17	17
TGGATATACGTCAATA	ref_5019_upstream	81	107	110	95	120	89	111	111	146	95
CGGGGTGTGGGGTCAG	ref_5019_upstream	11	5	18	8	6	11	8	14	7	11
ACTAACTCTGGTAAGC	ref_5019_upstream	25	26	29	15	29	15	30	15	30	14
TCTCCAGCCAATTGGG	ref_5019_upstream	105	163	117	111	190	103	179	101	182	100
TCAAGCATTCAAACCC	ref_5019_upstream	7	11	5	12	8	6	8	3	9	7
CGGTGGCAGAGGCTTC	ref_5019_upstream	75	70	105	74	88	70	92	89	96	73
CAGGACGAGACTAGCT	ref_5019_upstream	35	40	36	28	33	37	40	27	49	31
AAGGGCATTTTAGTTC	ref_5019_upstream	35	43	31	26	43	25	50	41	37	31
CCGGTTTCTACTTTTG	ref_5019_upstream	16	24	12	20	18	14	31	16	30	6
TATTTTTAGAATGAAT	ref_5019_upstream	55	47	55	39	58	34	50	29	47	46
GTGATGCTGCTCTTGT	ref_5019_upstream	25	19	19	30	36	27	35	22	25	12
CCATTGCGAGCATACA	ref_5019_upstream	67	121	116	93	129	76	149	84	134	65
TTATACACACCTGATA	ref_5019_upstream	34	38	26	24	42	31	40	23	51	27
CCAAGATTCAATCTCC	ref_5019_upstream	255	247	283	262	256	282	247	219	282	225
TGAGGTATACCAGACC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGATGACTTACTT	ref_5019_upstream	25	25	14	21	20	13	29	13	26	17
GCACATACACTGAAGT	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAGACGTTTGTTT	ref_5019_upstream	39	65	59	35	40	42	79	39	52	31
TTTTTTTGTCCGTCTC	ref_5019_upstream	17	26	23	9	18	15	23	18	16	23
CTGCTGCTCTGTGTCA	ref_5019_upstream	11	15	14	22	19	12	22	13	18	8
CAGGACGTGCCCGTGG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
ATGGACCTCTGGAAAC	ref_5019_upstream	47	47	42	41	39	28	48	43	44	31
TGAAAATTATCAATGG	ref_5019_upstream	0	5	1	1	6	0	7	1	5	3
CTTATAAATAAGCGCT	ref_5019_upstream	31	35	51	32	44	27	42	28	36	27
GTCCAGAAGTTAAACT	ref_5019_upstream	12	15	22	15	14	11	15	6	10	11
ATACCTTTCTTCTAGG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TGACTCACCCGGCCAC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
CACCGGATTTGGAAAC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
AAGATATTCGCTGGAC	ref_5019_upstream	87	81	95	64	76	71	92	75	77	55
GACCCAGTCGAGTGAC	ref_5019_upstream	14	15	13	8	14	5	21	8	8	7
TATCAACTTTTTATAA	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGCCTATCACGTA	ref_5019_upstream	30	48	39	51	57	40	50	40	55	32
CACACGCAGGTTAGTC	ref_5019_upstream	69	88	97	78	68	69	85	67	96	74
GGGAACGGTCGTTTTT	ref_5019_upstream	25	24	32	32	36	41	33	37	37	23
TGCGCGCTACTATGTT	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
GTATTGAGTTGGCCCA	ref_5019_upstream	26	46	52	50	53	42	46	28	78	36
CACACGGTCGAAACTG	ref_5019_upstream	22	77	31	35	85	34	85	27	74	28
TCCGTACTTTTCGGAT	alt_5019_upstream	61	47	52	37	44	35	41	34	46	32
TGGGCGATGGTCAGCC	ref_5019_upstream	16	12	20	13	9	21	14	7	13	11
ACCGAGCTATCAACGT	ref_5019_upstream	107	111	112	115	98	105	129	91	147	106
ACTGAACAGTGATTTT	ref_5019_upstream	38	59	49	44	58	39	59	41	61	30
TTTCTTGAGACAATAG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTAAGCTTTGTCA	ref_5019_upstream	5	10	4	4	8	4	3	6	4	3
CTATGTTTTATCATCC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCAGTGTTGATTT	ref_5019_upstream	2	3	4	2	4	1	3	2	1	1
GCTACTTCTCGCCCAT	ref_5019_upstream	102	102	95	106	117	108	102	105	98	86
AATCTACCGGGCTTCC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTTCTTTACTTGC	ref_5019_upstream	2	2	6	3	6	2	3	2	7	3
CTCCCCGTTACATGGA	ref_5019_upstream	14	118	8	9	123	13	119	11	124	7
TGTGCTGCAACCAATT	ref_5019_upstream	101	116	109	119	126	112	113	88	143	84
TTTGGCTTTGGTTAAT	ref_5019_upstream	52	73	72	51	74	56	93	59	78	49
ACCGTATCTTCCTCGA	ref_5019_upstream	7	10	11	9	9	7	11	7	12	5
TTGTCTCACTCAACCC	ref_5019_upstream	19	26	19	12	33	17	23	18	28	17
CCAGGTAGTGTTGCGG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGGCTCTCTAACG	ref_5019_upstream	1	9	4	8	5	1	5	3	3	7
ACTTAGATTTGATATA	ref_5019_upstream	39	40	47	58	55	49	59	40	76	46
TCACTGGTATTCTCTT	ref_5019_upstream	38	31	42	26	37	26	44	29	36	37
TGACGGGCTATTACTC	ref_5019_upstream	3	10	10	13	10	7	9	9	6	6
AGATACGCCAGTAAGA	ref_5019_upstream	35	31	42	24	29	27	41	39	31	30
TTAAATGCCGTACCGT	ref_5019_upstream	32	25	19	25	29	27	34	30	50	16
TTCAGCTGTCAAGATT	ref_5019_upstream	10	9	7	9	14	8	9	8	10	9
AATAGTATCTTATTTG	ref_5019_upstream	32	26	40	37	27	33	40	29	45	24
AACCACCCGCTCATGT	ref_5019_upstream	3	5	1	7	6	2	7	4	2	5
TGCAAGAGTATTTAAG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCGGATTGCGAATTCA	ref_5019_upstream	72	70	84	99	91	63	89	67	89	59
TTGGGTCCGAGGGCCA	alt_5019_upstream	174	168	194	169	174	163	144	151	156	141
CTGCCCATCTGCTACA	ref_5019_upstream	3	7	7	8	11	1	6	2	11	4
TTTTTCCTTTTGTGAG	alt_5019_upstream	190	167	247	185	180	152	175	156	169	169
CACATTCGGCATATTC	ref_5019_upstream	23	15	34	20	17	16	28	19	18	21
TTAGGAGCGTTTGCGC	ref_5019_upstream	126	157	145	145	142	138	197	112	179	129
CACTTCATTGGGCTTA	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAATGCCTGAGCT	ref_5019_upstream	90	102	99	82	96	73	109	87	110	72
CCCAATGCCTTGTTGT	ref_5019_upstream	34	51	37	51	36	31	48	28	58	23
GTATTTTATGTTGTTC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTGCATTAGGAAC	ref_5019_upstream	6	21	9	11	22	6	19	14	20	5
GTTTATTAAATCTTTC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTTATGTCTCTAGAAC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTGCCCGGCATGT	ref_5019_upstream	5	4	13	7	14	10	8	7	14	6
TTAGCTAATTTAGTAT	ref_5019_upstream	106	122	104	116	116	107	137	104	146	81
CAGTCTCGTGGACTCC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCCATACTGTGTG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGGTCTTAGCAAC	ref_5019_upstream	16	39	23	26	40	26	25	17	32	26
TAAGCTCGGACGTGGG	ref_5019_upstream	36	66	64	66	66	56	60	52	74	41
CTAAATAATTTAGTTC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCACGGGAACCCCCAC	ref_5019_upstream	32	33	46	34	47	27	44	41	40	30
ATGGCGCTAGATAGCT	ref_5019_upstream	219	225	282	244	269	253	234	187	235	188
GTTTGTCTGGATGTTC	ref_5019_upstream	1	7	5	5	9	6	8	4	4	6
AATAAACGCCCCTCAT	ref_5019_upstream	1	0	1	1	0	0	1	1	2	3
GACAAACTCGTGATGG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCTTCTCTCGCCC	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTCCTGTCTCAGG	ref_5019_upstream	0	0	0	0	0	0	0	0	0	0
TACACACTAGGCAAAT	ref_5019_upstream	4	11	5	10	10	6	4	7	11	4
ATCCCCTCGAGTCCGT	ref_5019_upstream	7	34	16	24	12	14	19	20	25	16
TCACTGCTGTTTAATG	ref_5019_upstream	5	20	13	9	13	9	5	8	10	16
CCCGTAGAGTGTCGAT	ref_5019_upstream	2	7	7	3	5	6	11	1	5	0
GCTTTTGACGTTTTAG	ref_5019_upstream	27	33	30	29	43	26	30	22	27	20
ACTCTACTTTCCATGG	ref_5019_upstream	18	19	16	23	20	20	26	15	23	14
ATGTTAGACTCTGGTA	alt_1700_fdr	44	34	49	41	52	31	59	23	46	31
GGCGGAATAACGATTC	alt_1700_fdr	20	13	26	32	25	15	17	17	24	16
CTCGGCTTTATCGTGT	alt_1700_fdr	25	37	45	39	36	37	41	32	57	27
TTTGCGAAATATTAAG	alt_1700_fdr	5	8	2	6	3	2	4	9	4	1
TTATCCGATTCCGAAC	alt_1700_fdr	52	76	71	49	75	43	91	51	87	55
GCTAACTTCTAAAGAC	alt_1700_fdr	43	66	69	43	83	50	68	27	66	51
TCCCATAGAGCTCCAC	alt_1700_fdr	22	29	19	8	18	17	18	12	22	17
GTTTCCAATGTTAGTC	alt_1700_fdr	24	26	24	29	31	27	38	20	35	15
TCTCCGAAAGGCCATT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CACACCGTAACTCCAG	alt_1700_fdr	3	19	14	8	15	14	16	6	19	5
TACGGCTCTTCTAGGC	alt_1700_fdr	30	29	26	23	34	21	36	28	21	19
TGCACCAAACAACAGC	alt_1700_fdr	49	73	64	59	61	46	63	54	73	31
GGGACGCGCTGTGTGG	alt_1700_fdr	17	18	17	23	18	15	13	13	26	10
CTTTCGGTTTACCGTC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CAACCTGCCATACTTT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGCATATGCGATC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGCGGCTTACTCA	alt_1700_fdr	10	13	17	16	30	10	15	20	22	12
CTTGAGAGCCTCACAG	alt_1700_fdr	250	284	280	229	298	233	291	206	320	214
TTTACTTTCCATCCTC	alt_1700_fdr	8	2	5	1	10	4	17	6	11	4
CTTTGGGCTTTGTTGT	alt_1700_fdr	27	46	35	25	27	29	26	23	40	32
AAGCAACGATTTTGTA	alt_1700_fdr	98	100	129	121	111	100	119	109	139	93
CATTTGCGTTGTAGTA	alt_1700_fdr	4	13	9	9	3	9	3	3	9	2
AAGTTGAAACTTATTT	alt_1700_fdr	18	22	19	19	33	20	25	16	16	12
TCCTCCCTGAAATTGT	alt_1700_fdr	15	23	18	10	27	13	18	13	19	11
ACATGTTCGTTCCCTC	alt_1700_fdr	80	89	87	68	97	73	84	54	104	65
TTTGAAATGTATGTCG	alt_1700_fdr	22	21	37	21	31	24	33	32	39	25
GTCTAAACAGGGCCTT	alt_1700_fdr	52	51	64	66	75	63	78	50	57	67
CTGCCCGACTATAGGG	alt_1700_fdr	13	23	28	22	15	12	29	22	19	11
TGTCAAATCCGTTCGA	alt_1700_fdr	2	5	1	2	4	2	5	2	3	0
CCACCCTGACCCACCT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGACTTTTGCTCT	alt_1700_fdr	9	7	3	6	11	2	6	5	4	4
CGGATTTTGCACCTGA	alt_1700_fdr	8	22	11	9	19	8	22	8	17	15
CCACGTTGCGGCTTTG	alt_1700_fdr	10	12	21	17	16	9	19	13	30	11
TTCGATAGTCTTCCCC	alt_1700_fdr	29	42	44	27	45	41	55	27	51	34
TGGGACCGGATAGTGT	alt_1700_fdr	37	58	46	42	73	37	61	43	68	34
CACAAAGACAAGATCA	alt_1700_fdr	2	7	4	1	4	2	5	2	3	0
GCACTGAGTCGCCAGA	alt_1700_fdr	10	13	15	9	11	12	16	9	7	10
TCCGATACTGCTTCGA	alt_1700_fdr	14	19	29	30	20	21	26	19	22	23
CCCGGGGCCTCACAGG	alt_1700_fdr	42	41	47	45	51	39	59	36	77	36
TACGGCGGTCAGTGTC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GCGATGGTACCTTGTA	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
ACAGACAAGCGATGAC	alt_1700_fdr	72	55	76	63	50	59	54	62	61	42
CTTCCCTTGTAAATGT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCGGGGATCCAAT	alt_1700_fdr	8	5	12	14	5	3	16	7	8	9
TTCCAATTACATACCT	alt_1700_fdr	30	110	23	28	86	23	92	21	95	21
GTAGACCTGGTGGAGT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTCAAACCCTCTGAAG	alt_1700_fdr	71	78	86	51	58	46	67	46	77	45
GGCTGTGTTAGCTTGT	alt_1700_fdr	80	77	64	59	91	50	101	77	105	46
TACGTACACACCCCTG	alt_1700_fdr	2	14	2	2	20	0	18	1	8	1
AATCCTAGAAGGTTGT	alt_1700_fdr	6	18	9	11	16	11	15	9	11	8
TGCAATGAATTTGGTT	alt_1700_fdr	12	14	13	12	15	11	9	8	18	14
GTTCAGCAAGACACTT	alt_1700_fdr	185	249	233	186	247	195	250	196	252	183
TCACCCTATGTTGATA	alt_1700_fdr	40	65	62	37	67	35	67	46	65	29
TGCACGTTATGTTGTT	alt_1700_fdr	20	17	19	22	23	15	24	22	31	27
CCACCATCCGTTACAG	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTTACAGGGTATTTTT	alt_1700_fdr	9	14	22	11	12	10	11	13	15	15
TTTGCATCGCGTGTGG	alt_1700_fdr	29	18	33	17	35	20	37	19	23	16
GGCGAAATAGATGAAG	alt_1700_fdr	34	23	27	31	30	24	26	14	35	26
AGTCCAAGATGACAAG	alt_1700_fdr	12	15	20	11	22	13	24	19	21	12
AGAGTTGTCATAGTCC	alt_1700_fdr	14	26	14	17	15	19	18	14	20	11
TACCCACGGCCGCCGT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAAATGAAATACT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCAGGTTAACGCC	alt_1700_fdr	135	155	171	109	185	130	184	110	188	121
CATTTCACCAGATGTA	alt_1700_fdr	3	6	3	6	6	6	7	1	4	0
TTCATCGTCAGCCAGT	alt_1700_fdr	18	41	37	22	51	32	45	18	40	19
GCCTGCTAGTCCGGAC	alt_1700_fdr	16	12	12	11	25	9	26	12	15	16
TCACCTTTTTCTGGAT	alt_1700_fdr	6	18	13	6	21	7	22	6	20	4
ATAGGTGAATCTTCCG	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CCGCACAAAGTGCTGA	alt_1700_fdr	108	274	174	125	244	108	274	116	264	118
GTGATGTGTTTGGGGT	alt_1700_fdr	9	24	24	17	20	7	11	8	25	10
GTTTCCCTCAAGTCGC	alt_1700_fdr	10	14	21	9	19	10	14	9	24	14
CCACCTTCCCGCGAGC	alt_1700_fdr	21	37	40	25	45	26	43	30	35	19
TTTGCAATGTTTGAAT	alt_1700_fdr	15	27	13	10	11	15	19	4	21	11
TCTTGCGGCCCAGTGA	alt_1700_fdr	1	9	4	6	4	6	3	3	7	2
TTGTTAGTACTTAATC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTCAGTGAGGTTC	alt_1700_fdr	47	55	50	31	40	28	49	33	74	29
ATTACTACTCTCACTA	alt_1700_fdr	83	89	94	108	95	94	125	72	107	95
TATTCGACTGCCATCA	alt_1700_fdr	39	57	58	49	60	49	60	50	58	35
TTTCACAGAACGTTGC	alt_1700_fdr	49	63	63	58	72	52	82	62	78	56
CTTACTGGGCTCTGCA	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCGTTCAATACAT	alt_1700_fdr	67	78	95	68	90	71	95	57	70	73
GACCTGGCGTCTACCA	alt_1700_fdr	30	64	39	37	41	32	47	44	53	34
AAAGGCTAGGTCGGTC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGGATCCCTGACCACT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TAGAATTCATTTTCAC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TATTTATACGTCTTTT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CATCTTTTTCCTTAAA	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GGGCAATGTCTCTCTT	alt_1700_fdr	40	35	43	41	32	34	42	27	45	28
GGTCTAAAAGCATTAG	alt_1700_fdr	43	48	32	31	53	53	62	32	38	31
GCCTAAGAACTGTTCT	alt_1700_fdr	6	6	7	4	10	4	9	1	11	3
AGTACCGGATCGTTCG	alt_1700_fdr	81	72	106	81	94	69	101	64	98	62
ACTTATACTGGGCTTC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGTTTGTGCTTGG	alt_1700_fdr	18	32	19	18	23	12	31	13	25	11
GGTCCAACAACTGTTA	alt_1700_fdr	84	106	91	70	109	79	113	51	102	79
CTGTGAGTAAACGTTT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGCCACCCGCCCA	alt_1700_fdr	1	0	0	0	7	0	4	0	0	3
TGTACAAGAAGTGTGC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TTAATTTACCGGTTGC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTGTATACTTGCG	alt_1700_fdr	23	20	13	33	27	12	17	18	28	13
CAGTGTCTTTTTCAGC	alt_1700_fdr	29	70	52	34	67	41	59	38	69	39
TCTGTGCTGTGCGACT	alt_1700_fdr	14	36	16	9	31	11	15	8	31	11
CACGATGAATGCCACA	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCGTCACCGCGCC	alt_1700_fdr	17	19	13	17	19	14	19	10	14	18
ACTGCACAGATGGCGA	alt_1700_fdr	20	16	23	29	25	19	24	27	37	20
ATGTTGGGTTGTGTGA	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGGTAAGGTGCTA	alt_1700_fdr	145	207	149	132	204	132	172	138	194	145
ACGTTTTGGCCCCTTC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GTTACCGTGACCAGCT	alt_1700_fdr	39	39	49	55	34	28	44	28	37	31
TAGTCAAAGGTCTATT	alt_1700_fdr	79	107	89	67	125	72	120	69	138	56
TGCCTTGGGGATGATG	alt_1700_fdr	45	39	51	47	52	43	76	33	56	41
TACCGTTTTCCGTATG	alt_1700_fdr	17	27	42	19	29	11	29	6	20	28
GGCTAGTTAGAAATTT	alt_1700_fdr	4	9	4	2	10	6	11	5	11	4
ATGCACGCTTTGTTGT	alt_1700_fdr	5	3	1	2	3	1	3	5	1	3
TATCGTGTCCTAAAGC	alt_1700_fdr	23	24	35	28	34	30	20	18	29	24
TCGCGTATGTCTCCAC	alt_1700_fdr	18	26	24	18	27	17	22	17	32	34
TGGTGAGATCGCGGGT	alt_1700_fdr	22	22	27	23	32	23	36	34	29	21
CGATCGTACCGTTTAA	alt_1700_fdr	42	71	48	34	54	47	41	45	65	27
GAATATTGTTGTACTC	alt_1700_fdr	19	17	20	21	33	20	26	14	31	16
CGCGCTTCCTTATACC	alt_1700_fdr	26	32	42	19	24	27	22	16	23	18
TAGACAGACGTGTCCT	alt_1700_fdr	24	40	32	27	22	40	31	16	38	20
GATGCTCGTTCGACGC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTGCTCTATTTTG	alt_1700_fdr	5	4	6	4	2	3	6	6	13	3
GATGTCTGCTTTACCG	alt_1700_fdr	8	18	18	7	20	13	26	13	18	6
TTTCGAGGTTACTTTG	alt_1700_fdr	3	11	7	7	10	3	10	7	9	6
CGTAGGTACTTAATTT	alt_1700_fdr	46	47	49	37	46	35	49	37	37	43
TGTCTATATTGTACGT	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCAGTGCACGCGG	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CGAACCCTTCGGGAAC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTCCTGCTCTACG	alt_1700_fdr	62	90	85	43	94	59	106	51	76	48
TGATCGCGTTTACACG	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
GGTGACTATTAGGGTG	alt_1700_fdr	5	9	11	9	13	6	17	6	12	5
CTCACCGTTTGACAGG	alt_1700_fdr	5	14	12	10	14	8	15	7	13	10
TGTTGAGCCTGGTGGG	alt_1700_fdr	8	7	15	7	9	10	6	6	15	8
TGCTTGGTAGCGTTAA	alt_1700_fdr	13	25	26	17	29	15	22	13	35	19
AAGTCCTGCTTACTCT	alt_1700_fdr	11	17	18	11	14	8	13	7	20	7
CTTCGGCGGACAGTGC	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CATGAATTATGGGGTT	alt_1700_fdr	40	47	50	47	45	39	44	39	56	42
TGGTTCGTCACTTTGC	alt_1700_fdr	41	31	41	29	38	33	43	16	41	27
AGTGTGTCCCAGTTGC	alt_1700_fdr	25	23	19	24	26	19	36	14	29	19
CGCGATGTTTGCCCCG	alt_1700_fdr	92	176	127	108	154	105	133	99	180	111
AACGCGGCAATTTGGT	alt_1700_fdr	24	25	27	29	26	32	46	19	23	21
AATCCTGTAGTTACTG	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
TGATACCTCGTAGGTT	alt_1700_fdr	6	11	4	5	11	5	9	8	15	9
GTTTAAGTCGCTCACT	alt_1700_fdr	65	73	51	56	65	39	63	41	68	29
ATCATGCTGATGTTAG	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTAATCATCCCGGTAT	alt_1700_fdr	15	11	27	19	10	13	22	16	18	12
TCGGGCCGGTGGCAAA	alt_1700_fdr	4	5	6	5	13	4	8	6	14	4
CTTATATAGATCCCTT	alt_1700_fdr	12	13	27	11	20	11	17	15	18	10
GACGTTTTGGGCCATG	alt_1700_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGATGGAGTATAA	alt_1700_fdr	9	20	13	18	27	11	19	7	15	12
TTCGATTCGGGTCAAC	alt_1700_fdr	0	2	1	1	0	3	4	0	2	0
CCACCACATTTTAGTC	alt_1700_fdr	141	119	129	117	154	112	135	113	166	100
ATATCATTAACGTCGC	alt_1427_missing	15	37	28	15	40	13	25	21	29	16
TAGCGGATAATCGGGG	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GATCTCTATCGCTGAA	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GTTCTCGCGATTACGT	alt_1427_missing	29	26	26	23	20	21	20	23	26	22
ATACACGCAATCCGCG	alt_1427_missing	18	35	21	31	29	23	30	31	35	24
CTTCCAGGGCCCAAGA	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TAGGACGTGTCCTTGT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
CACTTCTGATATTAAT	alt_1427_missing	9	13	5	8	8	9	12	2	10	7
ACTGCTATGCTTAATG	alt_1427_missing	31	52	40	21	63	44	54	33	59	32
CACCAAATTCTCAGTT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
AATCCTCTCGAGCCCG	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GTTTCGCCTTTCCTGA	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
CTACAACTTTTTGGTT	alt_1427_missing	6	21	5	11	21	8	21	8	22	4
CGCTTACTCTCATTCC	alt_1427_missing	75	141	94	81	135	62	139	76	180	93
TGTCTCTGAGTTCCCG	alt_1427_missing	2	8	3	0	10	3	7	3	5	2
CGGCACTTAACGAGTA	alt_1427_missing	62	105	97	66	112	47	119	53	117	69
CCATTGTCTCCTCAAC	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TTAAGATTATTGTATC	alt_1427_missing	83	135	99	97	150	102	147	66	125	51
GGCGCGCATTGATGTC	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
CAGTGCGTAAATAGAT	alt_1427_missing	17	43	21	21	42	18	40	23	34	20
TCAAGTCTACTCATCG	alt_1427_missing	22	42	35	33	48	30	51	25	56	22
AGCCGTCTTGCCGTAT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GATCTTTTCCTTCAGC	alt_1427_missing	8	14	17	8	14	11	20	11	22	13
TTGTGCCTAGAAGCGT	alt_1427_missing	17	25	33	20	39	16	38	15	36	19
TCGCAGAAAGTATATT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TTATGCCGGGGCCTGC	alt_1427_missing	38	38	33	33	40	27	48	15	46	23
GACGGATGGGCCTGAG	alt_1427_missing	7	17	7	8	17	10	14	10	11	12
TTTTCCGATTTAGGTG	alt_1427_missing	33	39	60	34	46	21	47	37	50	35
TGTTTAATCGTACCTT	alt_1427_missing	44	70	65	62	77	52	86	47	62	53
CGGGGGCTTCTACGTC	alt_1427_missing	0	2	0	2	2	1	3	1	4	1
GCGGTAGTTAGGAATG	alt_1427_missing	7	31	17	12	21	8	13	7	6	13
CAATCCGTCATTTGTT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TTGGTGTAGCATTTTG	alt_1427_missing	6	18	7	10	16	14	22	11	18	8
ATTATGTTTCGCTAAT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TATGGACCGTTATACA	alt_1427_missing	102	141	128	116	152	93	135	76	149	89
CTAACAGTAGGTATTA	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TTTCCAAGCAAGACTT	alt_1427_missing	25	40	32	17	33	13	30	13	35	13
CCGGCAGGTCCATAAT	alt_1427_missing	5	9	8	6	2	1	7	7	7	2
CTAGGTAAGTGGACTG	alt_1427_missing	21	21	25	21	26	17	23	21	24	14
GTACTCCAACATGACA	alt_1427_missing	8	13	7	10	14	16	22	13	25	11
ATGCTGCTTTGTCGCC	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GCCTTAAAGCGCCTCC	alt_1427_missing	10	14	13	14	23	25	19	24	26	11
CGTAACCTCATTACTT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TACATCTGGTATCATT	alt_1427_missing	7	10	11	6	10	10	23	10	21	10
TGCCGGTGTATAAGAA	alt_1427_missing	2	13	5	2	12	4	12	8	7	4
CCATCGGTAGGCTTAG	alt_1427_missing	12	15	9	3	10	10	14	4	25	8
CAAGGTCGTACCGTTA	alt_1427_missing	10	20	5	11	21	12	23	3	28	4
CTTCATAGGTTCAGGT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TTAGCCTACTTATATA	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TTTAATGTGGAGATTG	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
AGGTCTCCCTCCAGCC	alt_1427_missing	12	15	2	7	5	7	13	6	13	5
GGGTTTGATTCATCGG	alt_1427_missing	12	19	17	18	28	9	18	15	28	9
TCGCTCTACAGTACTG	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
TGACATTTCCTGCATG	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GTCAACGTCATCCTTT	alt_1427_missing	12	15	14	14	15	19	19	7	30	15
GGGTGAATATCTTGTA	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
CTTGCTTGTACCACTT	alt_1427_missing	25	33	39	18	50	23	37	16	43	28
ATAATTGTATTGTGTA	alt_1427_missing	9	21	7	4	13	7	12	7	18	5
GTTCTGTGTTCGGTTT	alt_1427_missing	45	61	46	37	60	34	70	31	66	37
ACAAGGGTAATACCTG	alt_1427_missing	1	6	5	2	7	2	3	2	3	1
TTATCGCCTAACTATT	alt_1427_missing	39	51	42	49	55	22	60	35	54	31
TATACCTCCTGGCGAA	alt_1427_missing	46	59	53	47	75	40	66	59	57	35
TCTCGTCGGGTTGCGA	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GTTGTAGCAAGCCCAT	alt_1427_missing	8	11	10	7	13	5	18	9	17	4
TCTCCCTCTTATCGTG	alt_1427_missing	9	43	14	12	27	14	36	13	42	9
CTGTTATACTTCAGCC	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GCCCTCTAGCTAGCAA	alt_1427_missing	15	11	21	15	24	19	13	12	15	8
TGTTACCGATTTTTCT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTCACCTGGTCT	alt_1427_missing	14	22	12	7	11	12	23	7	20	16
GTCGTTGCTGACATCC	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
AACGTATGGTGGGCCC	alt_1427_missing	10	14	18	12	21	8	30	8	30	13
CAGTGTGGCCTGTTCT	alt_1427_missing	0	0	0	0	0	0	0	0	0	0
CCCCTATTGACTCACT	alt_3129_RC	0	0	3	0	0	1	0	2	1	0
TAATCTTGCCGAGATT	alt_3129_RC	4	1	4	1	1	2	2	2	2	0
TCTGGAGTATCAACCC	alt_3129_RC	15	13	12	9	23	23	17	11	13	7
TTTACGTATAGCGCCG	alt_3129_RC	1	0	2	6	2	0	2	1	1	1
TTCGAGTAGGGCCTGT	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
ATGCCATCTTAGGGGT	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
CTTGTCCAGTCATATT	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
GCCGTAAGTCCCTGTC	alt_3129_RC	3	7	3	7	4	1	1	3	5	7
GCTTCGTCGGATGCAT	alt_3129_RC	55	58	56	55	62	59	55	49	69	67
ACACCCTGCTTCATTC	alt_3129_RC	22	38	21	21	48	26	48	23	45	19
CCTTTCATCAAATGCT	alt_3129_RC	49	38	45	44	39	50	47	39	47	34
CTTCTTACCCGCTGCA	alt_3129_RC	22	19	23	17	11	17	25	17	22	14
GGTTTAGTCTCGGTCA	alt_3129_RC	91	80	84	79	83	105	107	85	114	74
TCGCATGCATACCGGG	alt_3129_RC	56	75	65	52	77	54	69	47	75	46
CCTAGTCATGTGCGGA	alt_3129_RC	54	59	75	32	84	56	55	44	58	52
TTGAGGCTGTACGAAC	alt_3129_RC	17	15	28	19	18	21	23	16	31	14
ACTGGTGAAGGATAAG	alt_3129_RC	348	321	392	335	347	307	382	320	399	260
ATAATGCCGTGCCGTT	alt_3129_RC	25	18	21	28	21	16	16	30	15	26
CTGCACTTGTTTGTTG	alt_3129_RC	113	108	94	79	92	73	106	76	110	66
TTTTATCACATGTCAG	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
TTCGTTAATCTGGTAT	alt_3129_RC	24	40	38	36	43	52	54	52	59	36
GACGACCAGCTAACAC	alt_3129_RC	109	137	156	132	133	115	165	114	156	90
GCCTTTTCGTAAACAG	alt_3129_RC	31	33	35	33	38	32	46	27	34	21
ACAAATGCGTACACAT	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
GGTGGTACGGTGTGCC	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
ATACCATCCATAGCAT	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
GGCACTGCTCTTGTAT	alt_3129_RC	6	8	5	13	10	11	10	12	8	3
AGCACCTGCAAACTTC	alt_3129_RC	49	55	49	49	61	46	53	30	61	47
GCACGACTATGTTCTC	alt_3129_RC	422	429	491	398	442	415	452	335	428	431
ATACGCTGCACAGGTT	alt_3129_RC	28	31	46	18	33	23	26	23	22	34
ATGTGAACTTCGGCTA	alt_3129_RC	10	14	17	17	23	17	20	11	19	13
GTGGGTCAGTCGTGTG	alt_3129_RC	6	6	21	8	6	13	13	5	6	4
TGGGTGTTCGGTTACG	alt_3129_RC	18	17	21	21	17	10	14	14	15	8
AATAATTATTCATAGC	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
TCCTACGAGTATGACT	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
GGTCCATGTTTATCAT	alt_3129_RC	16	19	15	17	27	23	23	19	25	15
GAATGCTAATGTTCTT	alt_3129_RC	12	20	21	12	20	17	16	21	14	15
CGTTCTTGTTTGTGTC	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
TTGTGAAAAATTTCCA	alt_3129_RC	67	75	90	68	54	80	79	89	87	48
TGTATCCGTGCCAAGA	alt_3129_RC	15	9	10	9	4	12	7	8	9	6
CAGTTCAATGTCCGTA	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
CGGAACAGGGATATGG	alt_3129_RC	33	38	46	41	36	20	52	26	41	29
CCCGCAAGGCAGGATC	alt_3129_RC	41	33	28	39	31	30	26	33	41	30
ACGTGATGCACGACTT	alt_3129_RC	33	37	49	47	39	33	32	35	41	34
GTAGTTGCGCAAGATC	alt_3129_RC	33	44	45	40	42	39	45	37	39	34
TGCTTCGTTCTATGTT	alt_3129_RC	39	32	41	22	34	32	21	31	40	26
GGCATACCTTTTGTTG	alt_3129_RC	14	26	21	7	28	13	34	11	27	10
AGGCCTAAGGCAGCGC	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
AACCCTCTGTGGCCGC	alt_3129_RC	0	0	0	0	0	0	1	1	0	0
ATCACGCACAGACACC	alt_3129_RC	41	38	33	32	47	48	37	36	35	38
CTGCGTTTTGCGCCAA	alt_3129_RC	0	0	0	0	0	0	0	0	0	0
TGCGTAAATGGAACTA	ref_904_fdr	195	21	265	227	17	196	20	230	29	226
GCGTGGCGGCTAACTT	ref_904_fdr	226	42	315	261	37	245	37	252	29	210
ATGAGAGATAGCTTGG	ref_904_fdr	420	45	517	450	44	466	36	382	46	421
CAGGCCATGCCTAAGG	ref_904_fdr	416	54	496	456	68	359	77	414	60	373
CGCACGCCTTTATTTT	ref_904_fdr	705	69	843	688	92	684	94	665	87	599
GGGACTCTTCCTTATA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGTATTAAATAT	ref_904_fdr	610	66	760	656	59	629	78	604	81	587
CATGAGGTGGGATTCC	ref_904_fdr	566	67	732	573	58	649	49	566	70	553
TTGTTCATTCTTTGCA	ref_904_fdr	134	20	160	124	17	150	25	89	20	111
TCTGGTGCAAACTGCT	ref_904_fdr	289	63	250	190	35	169	49	160	40	199
TGTCCACAAAAGGCGT	ref_904_fdr	192	31	225	187	23	151	33	178	20	162
CCGGTGAGTAACCGAC	ref_904_fdr	157	25	168	122	35	132	31	133	20	116
AGTGGTACCAAGTGAT	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCTTTGCGACGT	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CCCCCCTCTTGGCGCC	ref_904_fdr	101	27	133	121	30	128	43	133	52	96
TACGCGGCTGATAATT	ref_904_fdr	349	18	380	311	38	295	36	310	46	285
GTGATAGGACGCTGAG	ref_904_fdr	46	7	47	31	14	51	9	34	8	40
AGTCAGGCACCCTCAA	ref_904_fdr	2282	242	2658	2362	228	2238	272	2264	238	2120
AGTTGAATATATAGAG	ref_904_fdr	556	50	579	594	51	485	66	497	47	432
TAGACCTATTTAATCC	ref_904_fdr	400	45	463	465	44	380	57	410	62	378
ATACCTTGAGCTCGGA	ref_904_fdr	44	6	52	48	3	47	4	37	12	33
TGCCGCGTAACCAGAG	ref_904_fdr	0	0	0	2	0	0	0	0	1	0
TGCCGAGGAGCTGTAC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GTTGAACATGTGAGTA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
AGTATTCCTGTTTGCC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGCTGCAGGAGGA	ref_904_fdr	2178	251	2587	2259	231	2129	251	1952	218	1974
CCGATCATTTTACACT	ref_904_fdr	104	12	166	161	18	101	17	130	24	111
TCCCAGTTTACCCGTT	ref_904_fdr	1594	216	1827	1560	169	1421	190	1507	165	1441
TTGTTAGTTTGTAGAC	ref_904_fdr	3349	422	4159	3462	418	3379	421	3319	469	3032
ATTTTGGTTCGCCTTT	ref_904_fdr	206	27	276	204	17	214	17	183	27	193
TCGCTGCAGTGGCCGG	ref_904_fdr	1418	138	1730	1421	151	1380	164	1400	164	1269
CCAGTGTAAATTTTGA	ref_904_fdr	850	98	1042	887	103	781	117	807	119	795
ATTCGTAATTTGTTAT	ref_904_fdr	1382	177	1675	1474	150	1378	188	1153	126	1351
ATTGCCTCATACTCGC	ref_904_fdr	102	14	98	99	7	67	15	85	8	95
CTTCGGTAACTCCAAA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCCTTCAATACGA	ref_904_fdr	367	33	463	301	41	357	38	317	49	334
CTTATAGTATTGTGTT	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
AACCGGGCTGCGTTCC	ref_904_fdr	240	34	307	257	33	209	30	229	27	239
GTTTGGACGGCCATTA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CGTGGAGCGGAACTTA	ref_904_fdr	575	84	747	664	68	609	78	557	78	581
TCCCTGTTATCATTGC	ref_904_fdr	356	53	444	352	44	337	50	293	60	329
ACATTATGCTTTATTC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
AAGATCTCTCGGCATT	ref_904_fdr	136	24	167	118	17	161	23	148	26	134
TCGTGCGTCTAACGTA	ref_904_fdr	801	77	862	723	98	674	94	643	108	683
TGGTCAAAAGACGGGA	ref_904_fdr	1531	171	1821	1534	136	1509	140	1452	209	1386
TGTTAATGAGGTATAG	ref_904_fdr	793	93	1055	899	100	883	105	836	87	808
TTTGTACGGGTTCTCC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGAATATACACTG	ref_904_fdr	230	32	298	284	42	249	39	243	40	222
TCCGCATAGGCATTGT	ref_904_fdr	588	63	697	529	66	609	68	498	66	562
CATTCTTCCGGGGAAT	ref_904_fdr	142	10	135	136	19	110	16	107	13	125
GGGTAGAGTCCGGTAC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
TATGGAGTTTTGACCA	ref_904_fdr	618	76	798	691	70	645	61	575	85	528
GTGTTGATTGAAATCT	ref_904_fdr	2702	338	3289	2891	301	2700	321	2499	324	2497
GGCACGAAGTTTGGTG	ref_904_fdr	39	6	53	45	6	33	4	35	8	44
GACAGCGACGCTGATA	ref_904_fdr	369	48	479	394	42	395	57	366	50	404
TTCCCCACGACCTTCT	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTCCCGCGGGCGC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GACTGTGTAATGACCT	ref_904_fdr	516	56	590	482	62	510	70	479	67	435
CTGTTTGTCTGCCTAC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCCCGGTGCACCA	ref_904_fdr	259	16	293	246	25	234	22	219	25	231
AAGTAATCTCGTATCG	ref_904_fdr	306	45	409	351	22	314	31	299	35	307
GTTCTAACGACGTTGG	ref_904_fdr	248	34	264	238	26	225	35	237	29	224
CGCCCTGTCTCTTGCT	ref_904_fdr	211	22	203	173	25	208	21	165	26	167
AGCCGCCGAAGATCAC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTTTCTCGTCAC	ref_904_fdr	1571	168	1894	1631	185	1494	154	1454	149	1449
CACTTACCTAAGGGCG	ref_904_fdr	287	191	315	289	199	261	188	254	199	242
AGGGGTTTAGGTACAT	ref_904_fdr	143	13	193	158	16	162	25	158	13	146
GCTGAGCTTGTAGGTG	ref_904_fdr	3061	388	3700	3151	420	2942	408	2924	398	2799
ACGCTCAGTTGAATCT	ref_904_fdr	1084	122	1223	1075	110	968	124	972	123	915
TACTTTGCCCATTTTG	ref_904_fdr	230	24	287	241	30	239	22	228	19	254
GAATTCTTGGAGAGAA	ref_904_fdr	156	13	168	147	22	132	11	161	15	121
CCTCGATTTCGGAACC	ref_904_fdr	85	6	85	89	12	75	8	67	9	72
GAATCAGTTAATAGGC	ref_904_fdr	474	50	649	506	56	521	70	472	68	441
TGCGACGATGACTACC	ref_904_fdr	407	57	484	453	53	432	63	434	53	445
AATCGCCTAAGATTTA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
AATTCCCCCTTATGTA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCTGCAATCACC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCAACACTAATAG	ref_904_fdr	454	48	524	482	49	501	72	428	46	387
AGTATCAAAATAGCGC	ref_904_fdr	21	5	31	18	3	25	4	30	1	34
TGCGGGGGTCAGACGA	ref_904_fdr	731	56	854	707	75	700	89	653	85	674
GGGATCCCGCATGACG	ref_904_fdr	2080	270	2440	2197	274	1964	243	1983	264	1912
TGAAACTAGAATTGTT	ref_904_fdr	32	6	32	33	8	36	2	22	8	18
CGTTAGGAGCCTATTA	ref_904_fdr	86	14	141	106	11	121	14	100	10	100
GTTCAACTGTATCTAT	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GGCATGTTTCTATATA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCACCGACAGCGC	ref_904_fdr	13	1	14	7	2	10	6	9	1	11
TTATCAACCATTGATT	ref_904_fdr	4180	459	4773	4063	450	3880	484	3678	493	3607
GTCCGCAATGACAGTT	ref_904_fdr	289	28	269	262	37	263	41	292	26	226
GAGGAAGCCGGATTTT	ref_904_fdr	222	18	249	220	21	197	28	216	18	190
ACCCATGAATTTAATT	ref_904_fdr	93	10	122	103	12	83	13	96	13	73
ATATGCGCTCTGTTAT	ref_904_fdr	313	31	406	321	42	352	55	363	55	315
TTTCAGCCATAATCTT	ref_904_fdr	381	48	451	393	41	362	37	350	52	351
CGAATGCTAACTGAAC	ref_904_fdr	371	39	505	400	55	367	42	371	45	359
TTCGACAAGGGGCATG	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
AACTGTTGTCCTGATC	ref_904_fdr	262	27	306	254	31	252	41	241	45	223
TCTCTAATTTAGTGCC	ref_904_fdr	65	5	76	76	6	57	8	58	6	60
GCCTCGTGTTACGGAT	ref_904_fdr	2016	252	2387	2075	272	1842	248	1922	230	1800
TATTCCCTATATTCGC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GGATCGAGTATTCTCC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTATTATTGCGAG	ref_904_fdr	141	27	186	129	22	146	14	168	21	125
GTTTTGTCGGGCAGCG	ref_904_fdr	173	17	236	186	11	195	27	177	20	189
CATTTATGAGTTGCAT	ref_904_fdr	334	34	369	286	46	276	39	252	44	263
TTCTGGACACTCGGTA	ref_904_fdr	44	2	41	39	6	23	7	40	5	32
TGATCTCCGTGTCTTT	ref_904_fdr	113	8	105	81	11	91	15	79	16	87
TTTAACCTTGGTGCCA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCATTGCTCATG	ref_904_fdr	640	102	756	656	83	602	82	657	88	609
TTGTGCCGGAACCAAG	ref_904_fdr	4	7	6	2	3	3	2	1	2	3
ATAGACTCTGCTTCCA	ref_904_fdr	424	47	492	406	41	382	43	390	51	378
CGATCCGCAATCCCCT	ref_904_fdr	460	70	652	594	81	489	71	514	58	468
TATTCTGGGGTTCTTT	ref_904_fdr	174	18	198	161	20	161	17	134	18	126
CTTCCTGTTGTTCTTG	ref_904_fdr	566	64	708	614	70	567	95	565	53	571
TTTTTACTCTAATGCG	ref_904_fdr	301	36	362	290	38	274	33	300	30	268
CCGGAGACACCCGTGG	ref_904_fdr	385	32	404	366	41	352	61	325	37	366
TACTGTTCACAAGAGT	ref_904_fdr	303	37	379	284	45	296	40	280	30	269
CTCAGATGTTACTAGG	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGCCCTGTTTAAT	ref_904_fdr	1033	116	1214	1012	131	1008	113	964	130	905
CGGGCCATGCCTAAGG	ref_904_fdr	1112	121	1353	1219	141	1113	171	1070	135	987
CTTATTCATTTGACGT	ref_904_fdr	201	37	293	214	25	185	43	222	27	200
GGCGGCGGTAGCGTGG	ref_904_fdr	4	0	4	8	1	4	0	3	2	9
GTCTACTCGTGTTATT	ref_904_fdr	82	12	122	98	11	117	9	92	12	75
TTTGTTTTCTTGTCCG	ref_904_fdr	109	12	145	140	12	105	11	120	13	111
ATACTTGATCAAGGGC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CAAACCCCTACAAGCG	ref_904_fdr	291	24	363	312	42	267	24	296	24	208
GCAAGTCGTCAATCTA	ref_904_fdr	210	22	271	210	20	227	30	234	37	204
CTCGTGGTAAGATAGT	ref_904_fdr	2381	273	2817	2416	295	2318	319	2200	277	2061
ACCATCCTCGAAGGTC	ref_904_fdr	678	96	916	759	111	695	103	731	77	582
ATGCTAAGACTCCTTC	ref_904_fdr	32	14	44	34	16	35	13	41	7	25
TGTACCCATCAACATC	ref_904_fdr	70	4	74	76	14	62	16	79	12	78
TGGTAAGGGGTACAGC	ref_904_fdr	133	18	192	153	19	143	18	136	19	116
GATCGCCTGTGACCCA	ref_904_fdr	154	17	183	152	11	156	16	162	20	144
GTCGATGGTTTTGCCT	ref_904_fdr	297	30	371	343	46	255	49	297	40	259
TGAGATATGTGACTAC	ref_904_fdr	303	36	410	325	33	309	47	329	33	248
TGCACCCAACCTGCTC	ref_904_fdr	160	11	178	130	17	170	29	181	15	148
AGCCCTTTGACGACCG	ref_904_fdr	2508	317	3263	2736	371	2566	342	2562	370	2406
AACCCCGTGTGTTCCA	ref_904_fdr	383	55	493	447	69	363	58	405	50	363
CAAAGAGCTTGGAACC	ref_904_fdr	155	24	236	182	26	178	25	160	30	153
TTGTACGCCCCCTCAT	ref_904_fdr	160	19	186	172	20	155	39	171	47	142
ACCCGCTGTGACTGAA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
GACTTCTTGTTAGTTG	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CATTATCATCGGCGTG	ref_904_fdr	243	29	282	248	29	225	20	203	23	245
AGCGCGGCATAATCGG	ref_904_fdr	0	0	0	1	0	0	0	0	0	0
TAGCTCTGTCGATCGC	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
TCTAGTGTCCTTGTGG	ref_904_fdr	474	58	536	494	73	422	49	386	64	415
ACTATGCACCTCTCTT	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CTTATTTATAAATAAG	ref_904_fdr	672	67	804	629	82	565	76	561	80	532
TTTTGATAGCCGAGTT	ref_904_fdr	306	42	347	331	38	311	21	320	34	291
AGGGTTACACTGGGCA	ref_904_fdr	0	0	0	0	0	0	0	0	0	0
CGGCACGATCCATGGC	ref_904_fdr	1087	88	1321	1150	103	1074	98	1067	118	1004
CACCAGTCCCTTCCGG	ref_904_fdr	2089	218	2270	2074	231	1915	225	1782	256	1824
TTGGAGTTACCCATAG	ref_904_fdr	1219	112	1440	1174	124	1039	149	1119	122	1065
TCTCCATGACTTTCAC	ref_904_fdr	136	15	119	89	8	96	11	121	11	104
CATCATGTGTGGGCTT	alt_3390_missing	1	5	4	3	5	5	7	0	8	4
TGCTTCCATTTGTCTG	alt_3390_missing	7	20	6	8	21	6	17	10	21	5
CCAGACTCCGTTGTAG	alt_3390_missing	0	4	0	1	6	0	6	1	8	2
CTATTGTTCCACCATA	alt_3390_missing	3	19	17	6	21	6	21	3	33	8
TTACTTCAGGGGGGGT	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
GGAAGAGAGGCTACTA	alt_3390_missing	6	11	13	3	7	5	14	4	11	1
TCGCGCTTGGAGGTGT	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTCTGTTTCTGC	alt_3390_missing	21	28	27	20	32	22	39	17	36	12
TCCTGCGCAGCCACTC	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTAAAGTGACTA	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
TAGTTACAATGAGTTC	alt_3390_missing	5	12	3	3	6	7	0	3	12	1
TTATAGCTTTGGTGTG	alt_3390_missing	59	152	91	59	155	60	149	71	187	85
TCGCGGATCGTTTATG	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCGCACTTCATT	alt_3390_missing	20	59	26	32	64	19	51	32	39	18
GTTATCTGATATCTTC	alt_3390_missing	19	27	20	26	19	21	30	11	20	20
CTGTTTCACTGAGCGT	alt_3390_missing	13	45	23	24	50	23	66	19	59	15
TCCCGACCTACGGTGC	alt_3390_missing	0	0	1	0	2	2	2	0	1	0
GGGAGCAGTTACAAGT	alt_3390_missing	23	51	36	25	44	25	66	25	56	24
GCGCGTTCCCTGTCCT	alt_3390_missing	11	8	6	8	8	5	11	6	10	6
TTGTCCGCATATGAGT	alt_3390_missing	10	28	14	4	16	9	22	5	25	13
TGCCTCCACTGAACAC	alt_3390_missing	23	31	26	19	49	30	40	24	46	24
CACATTTCGCCTCTTT	alt_3390_missing	21	32	19	9	33	15	22	15	20	12
GAAAACTCGAGGGTAT	alt_3390_missing	85	148	106	67	138	75	136	76	143	86
TCCGATTATGTATGCT	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
AGACCAAATCCATGGA	alt_3390_missing	6	18	6	8	10	7	7	6	11	6
CATTTTTGTTTTGCTA	alt_3390_missing	73	161	112	93	193	99	161	98	161	73
CGAGTGCCTGATATCA	alt_3390_missing	3	14	1	1	13	4	12	2	12	4
GGTTCCTGTCAGGGTT	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
AATTAAGCTCCTTTTC	alt_3390_missing	24	31	27	29	39	28	54	22	65	18
TGTTGCCTCTTGGGGT	alt_3390_missing	22	38	15	19	37	20	35	14	33	16
CACAAGAACTGAATTT	alt_3390_missing	36	58	39	22	55	35	68	22	67	20
CTCGGATTATCGGTCA	alt_3390_missing	19	13	11	7	19	7	14	3	18	7
CTGCCGCAGCCGATTA	alt_3390_missing	16	17	15	9	38	10	23	16	26	11
ACTCAGACATGCGTTG	alt_3390_missing	41	62	37	28	72	30	56	37	66	29
ACCCCGTCGGTCCGGG	ref_3390_missing	2	32	1	0	32	3	20	4	26	2
TCCCTGTGGAGGTCTA	alt_3390_missing	0	0	0	1	2	0	2	0	0	0
TTTCTGGCATCTTACA	alt_3390_missing	10	15	10	12	9	10	16	7	8	4
TGCTGCAGGACCTGTG	alt_3390_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTAAGGCTGGTC	alt_3390_missing	3	2	0	3	5	3	2	2	4	2
TGTTTGGCACATTGAA	alt_1709_fdr	41	83	51	30	62	36	93	32	84	44
TGATCACTTCGGTTCT	alt_1709_fdr	8	6	16	7	19	11	8	7	15	6
TAGCATTCGATCGTTG	alt_1709_fdr	11	8	5	4	6	4	3	6	2	3
CCTACCTGATACTAGG	alt_1709_fdr	9	13	4	9	15	5	18	4	16	6
CTAGGCTCGGCGTCTC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
ACTAACTTGATGCGGG	alt_1709_fdr	7	8	3	10	8	10	15	4	12	5
CATACCCATTGCATTA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TATCTGGTCGGGTAAT	alt_1709_fdr	7	20	11	18	22	7	11	4	20	3
TTACCACTATTACGCA	alt_1709_fdr	13	25	7	9	25	6	25	6	22	11
TGCTCCCCGAGAAATT	alt_1709_fdr	1	25	7	7	27	1	26	2	19	2
TTTAGCATTCCAAAGT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
CATTCAATTCATAACG	alt_1709_fdr	4	13	6	6	13	6	5	5	13	3
GAAGTTCATTTAATGC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
AATTCGAAGGGAAATC	alt_1709_fdr	6	4	18	5	6	7	8	9	11	12
TACCCCCGGGGGGGCG	alt_1709_fdr	8	6	2	7	5	0	2	2	4	2
ACTTATCTAGAGTGAT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GACCGTTGTTAATTGT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GAACAATGAAACCCGG	alt_1709_fdr	7	7	5	7	10	6	10	5	3	6
TACGTGATTAACCATG	alt_1709_fdr	62	167	111	95	155	73	160	73	160	64
TATCATCGGAATGATT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
AGCACACCACTGTGGG	alt_1709_fdr	2	7	4	2	3	5	9	2	5	8
CCGACCAGCTCAATGG	alt_1709_fdr	1	15	5	10	8	3	13	6	23	5
TGTGTTTTCCATTGAA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
ATCTAGTACTCCAGCT	ref_1709_fdr	50	257	76	58	225	53	236	40	257	47
GACAGAATCTAGGGTT	alt_1709_fdr	24	24	21	22	29	19	39	26	36	11
GATAGATCTGAACTCG	alt_1709_fdr	11	15	14	9	18	9	18	7	14	9
CCTCGTGATCTACTGC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TTTACACCTCATTAAT	alt_1709_fdr	43	52	33	37	61	28	66	28	74	30
GTAACTTCCGGTCTTC	alt_1709_fdr	18	14	15	11	13	15	23	16	20	12
AGGCATGCCCGTTTAA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GTGAAGCTGGCTTATG	alt_1709_fdr	4	10	4	2	6	6	16	5	7	5
ATGTTCTTTATGACTA	alt_1709_fdr	21	26	19	17	31	11	34	13	48	10
CAAATTGAGTTTTGTA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TCACTCAGAGGTGTGC	alt_1709_fdr	5	19	7	9	23	2	20	5	27	5
CGTGAATTCCCAAAGA	alt_1709_fdr	33	40	33	26	50	28	49	22	69	21
AGAATGATACCAATTT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GTATGTAGACAATTCG	alt_1709_fdr	5	1	7	12	15	5	6	6	10	6
GGAACTGTTAGTATAT	alt_1709_fdr	31	84	27	36	88	27	78	33	65	38
CTTCAGGGCCATTCGC	alt_1709_fdr	8	21	9	5	16	7	21	4	16	1
GTTTTAAATCAACTTA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
AGGTAAGTCGTACCGG	alt_1709_fdr	62	91	73	80	97	61	103	63	118	54
TTTAGTCGCGTACGTT	alt_1709_fdr	27	47	37	31	65	24	59	29	54	29
CACATGACTGATTGTC	alt_1709_fdr	36	85	47	38	83	43	93	32	82	45
CCTAGCCTCAGCGCGT	alt_1709_fdr	0	8	0	4	3	0	3	1	5	3
GTGGGCTTATCTACTG	alt_1709_fdr	117	206	116	89	227	92	182	98	229	103
CCTCTTTTTGTTTAGT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TACACCCGGCCCAGAA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CGCATTAATCATGCCG	alt_1709_fdr	43	64	49	27	49	42	58	48	61	35
CTCCTAGTTGGTATTT	alt_1709_fdr	14	27	32	15	28	17	46	11	46	14
TGAACCAAAACAGCCC	alt_1709_fdr	30	67	43	31	60	45	83	35	83	26
TTTCTCATTTCTCAAC	alt_1709_fdr	27	28	20	19	31	20	41	15	43	18
ACGGGCCACAATTTGC	alt_1709_fdr	6	45	9	5	50	12	41	5	47	6
ACAGTTCCGGTGCTAC	alt_1709_fdr	50	77	53	48	134	53	103	39	94	66
CTGCCCACGTTCTTAT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GTATAGTTGTATTCCT	alt_1709_fdr	35	120	66	52	127	55	122	44	104	41
GTCTTCACTCGTGTGT	alt_1709_fdr	5	25	9	11	28	10	30	11	31	12
GGCTTTGCGATACCCT	alt_1709_fdr	34	59	34	27	60	33	61	26	69	32
ATGTTGCTATCTAAGT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GTAACGGTTTGTTACC	alt_1709_fdr	7	10	8	5	8	9	17	9	11	5
TACTCGGTGATCTTGT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
AATATAATTTTCGTAT	alt_1709_fdr	9	25	6	21	16	7	16	7	13	17
GCTTGTTATCGAAATC	alt_1709_fdr	6	14	6	6	9	8	17	7	16	5
GAGTTCACTGGTTGTT	alt_1709_fdr	53	99	61	50	99	44	115	44	119	38
AGCCACCCGAGTTTTG	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TTTACACCCTATCCAT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCCCCGAGTTTTG	alt_1709_fdr	121	335	155	147	360	110	355	136	392	101
GGGACGTTACCACAGT	alt_1709_fdr	22	34	21	20	59	10	47	29	41	19
GGCTGCGTGGCCCGTT	alt_1709_fdr	15	22	9	9	23	8	16	17	14	14
TCGCTCTTGGCTAATA	alt_1709_fdr	25	50	30	20	49	20	39	27	46	24
CACGGATCCTGCGAGC	alt_1709_fdr	10	6	3	1	7	2	7	3	3	2
AAAACTTCATGCTTCC	alt_1709_fdr	19	32	15	17	38	23	26	23	39	22
GTTGGTCGTTTCCATC	alt_1709_fdr	30	25	21	17	32	28	36	13	42	12
GTTCGTGAGGTGCAGT	alt_1709_fdr	40	82	45	44	73	33	60	25	90	36
GCCCTAGGAAGTTCTA	alt_1709_fdr	27	40	27	21	47	28	58	25	63	19
CGCTCATTTTAAAAGT	alt_1709_fdr	12	28	19	8	29	18	21	16	31	12
TATGCATGCGTCCGCA	alt_1709_fdr	25	38	30	17	32	19	53	18	54	17
TGGTCTTGAGCCCTCT	alt_1709_fdr	12	44	9	7	45	11	42	10	29	7
ATCACTTCTGACCGGG	alt_1709_fdr	48	71	36	40	78	38	82	43	72	28
GCGATGGCCTCGTGAT	alt_1709_fdr	20	36	19	13	30	16	29	19	25	14
TTTAGCCACAGTCTTA	alt_1709_fdr	18	38	19	13	40	6	53	15	52	18
CCCTCGTGATTAGCCC	alt_1709_fdr	31	41	26	23	51	25	46	13	45	29
GCGACTTGCTTTTTCA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GCAAATATCCCATCAT	alt_1709_fdr	17	30	19	16	23	23	36	15	42	16
CGAGCTAATATATTCC	alt_1709_fdr	14	24	18	16	22	16	28	12	18	15
CATACTTTGCGCGTTA	alt_1709_fdr	22	57	25	12	49	19	53	24	37	13
TGCTGTGGACGAGTAA	alt_1709_fdr	25	30	42	31	47	32	49	28	49	33
CTTATACGGCGTTCTT	alt_1709_fdr	24	37	27	22	25	18	36	16	22	12
CCGGGGGTCGATCCAT	alt_1709_fdr	7	24	9	9	39	5	32	8	37	10
ATCGTCATCGTGAGGT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
CAAGCTCATTGTATCA	ref_1709_fdr	24	39	36	26	49	22	47	16	39	19
ATTTTCCCATTATGCT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GCGCGCTACCTAGCGG	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TATCTCATAGGTCGGG	ref_1709_fdr	155	255	208	104	264	141	288	144	269	128
CTTGTAATACTGTGCG	alt_1709_fdr	16	33	13	19	30	16	31	13	37	13
GTATAGTTGCAAGCTG	alt_1709_fdr	10	42	31	11	31	16	40	18	20	19
ATCGTGAGGCTGGTAT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCAACCACCACGA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TCATCGCAAATCTACA	ref_1709_fdr	29	29	27	29	36	19	32	33	32	25
AGAGTGATTTTAGGAT	ref_1709_fdr	41	77	44	26	49	37	69	46	60	44
ATTATCGTCCCTTTTT	alt_1709_fdr	9	8	6	4	15	3	12	6	7	1
GAAGGATCACGCTTCC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GCCCACAATCTGTCAA	alt_1709_fdr	10	43	20	16	45	16	30	19	21	13
CGATGATTTTCCGTAA	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAACGATAGTAAA	alt_1709_fdr	5	11	2	3	7	3	10	3	7	7
GTCATGTAAGTCCATC	alt_1709_fdr	14	19	6	7	16	8	10	9	12	9
TCGTGTGCCAGGTGGG	alt_1709_fdr	2	8	8	5	14	3	12	4	8	7
CTGCAGCGAGAGTACT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
ACTATTTAAGGCCAAT	alt_1709_fdr	16	26	14	14	28	21	30	23	32	11
TTACTCAGTTTCCTCA	alt_1709_fdr	6	13	7	14	7	8	5	7	9	4
TCTGGTATTATCCTTA	alt_1709_fdr	20	40	23	33	32	16	43	29	59	13
GCAAGACTGAATTCTG	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTGTTGTTGGCAT	alt_1709_fdr	18	14	20	10	38	22	20	19	33	11
CCCTTAGTACATGAGT	alt_1709_fdr	18	29	22	25	32	21	55	16	40	9
GATGCACAGGGGATAG	alt_1709_fdr	0	2	2	0	1	0	2	0	0	1
ATCTTCGGCAGTACAC	alt_1709_fdr	11	6	10	7	19	10	14	6	15	9
TCAAGACCGCAGTCCA	alt_1709_fdr	0	4	2	1	3	1	0	5	0	0
AATTGTGTGTTTGCTC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGGATGTTGGGGG	alt_1709_fdr	20	27	25	21	31	9	38	15	43	8
GGTGTAGGTGCCACTT	alt_1709_fdr	1	3	1	0	1	0	0	0	1	0
CCGCGGCTGCCCTATT	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTGTCCTAAAGGA	alt_1709_fdr	9	30	12	13	32	8	24	17	40	9
CCTGCGAGTCCGGCCT	ref_1709_fdr	9	8	11	10	12	5	12	13	11	8
CAGTATACGCTTTCAT	alt_1709_fdr	4	13	12	9	14	4	11	4	21	4
TTCCGGTCGACCGTCC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
CCAAGTGAATACTCGA	alt_1709_fdr	16	66	20	15	69	17	99	20	94	16
CGATCTAAACTCGTTC	alt_1709_fdr	36	85	44	40	80	46	92	36	77	33
TTAAATCTCATTACGC	alt_1709_fdr	14	33	15	5	42	18	34	8	25	8
ACTAACTAACGCCGGT	alt_1709_fdr	5	7	5	6	7	1	7	3	9	1
AAATACCCCTGGGAAT	alt_1709_fdr	4	14	13	6	12	11	22	7	18	18
CCTTTTCCTAATTGTG	alt_1709_fdr	9	30	16	20	35	21	47	16	30	15
CAGCTGTGATATCTCG	alt_1709_fdr	0	2	0	2	1	4	0	2	2	1
GGCTGAACTGCTCATC	alt_1709_fdr	18	45	26	22	38	15	37	20	39	8
TCTTAGTCCTTCGCAT	alt_1709_fdr	26	47	32	31	41	24	45	20	50	18
ACAGTTTTCTGTATTG	alt_1709_fdr	10	45	26	12	46	14	47	19	49	12
AACGATTTTGTTAATC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGTGCCGCCAGTG	alt_1709_fdr	34	62	47	47	74	32	84	39	72	31
TCCCGTTGGATGGCTC	alt_1709_fdr	0	0	0	0	0	0	0	0	0	0
GAGGATAATTTCGCGT	alt_1709_fdr	11	21	19	11	22	16	21	19	11	9
ATGGCTTTTAATCCCA	alt_3331_fdr	287	130	329	327	159	248	147	297	137	243
CTCGATCTACCCTTGA	alt_3331_fdr	22	36	53	42	29	28	23	45	33	27
CTCGAATGAAAGCTTC	ref_3331_fdr	162	138	169	154	102	142	126	145	130	123
GAATTTTTGTGATTTA	alt_3331_fdr	99	52	133	135	51	83	57	95	41	92
AGTAGTACTGTTACTT	alt_3331_fdr	115	70	154	156	65	105	77	121	75	123
TAAATAAAGCTTTATA	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGGAAATTTTTAG	alt_3331_fdr	34	19	42	33	21	30	10	30	4	26
TATGATCTTTTAGCCT	alt_3331_fdr	13	9	14	18	2	21	4	12	14	12
CTTTACGCATTTGTTG	alt_3331_fdr	332	177	415	348	205	302	209	371	188	299
CCTCCTCGGATAGGTC	alt_3331_fdr	192	116	223	190	117	192	112	179	83	171
CAGCAACTTCGTATAT	alt_3331_fdr	70	58	103	115	54	73	61	84	56	78
TCTTGAGTATCCGTTG	alt_3331_fdr	18	10	25	27	11	12	14	25	14	21
CTGTTAGGCATCAACT	alt_3331_fdr	39	22	49	34	19	30	21	28	22	32
GATTTAACACACCCTA	alt_3331_fdr	24	4	23	23	3	18	5	25	10	13
TTAATTTGATGTAGGA	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TATTCAAATACTCCTG	alt_3331_fdr	110	60	135	113	58	108	65	102	59	83
TTGAATACTGAGGATG	alt_3331_fdr	25	22	30	25	24	23	23	18	18	33
CATCGGATATGTTCTA	alt_3331_fdr	35	20	38	42	21	40	15	39	21	33
TATCTACGAGACAATT	ref_3331_fdr	56	38	81	78	53	59	55	67	46	68
ATAAGCGCCGTGGGTA	ref_3331_fdr	127	163	217	163	118	149	135	144	153	139
ACCCCTGAGTGCATGT	alt_3331_fdr	41	30	59	47	20	46	25	41	20	52
GGGTTTTATTTGCACT	alt_3331_fdr	41	19	31	36	12	34	32	38	15	27
CTTCTTCCCGTCCTCG	alt_3331_fdr	21	35	31	29	24	18	15	32	26	24
AACGGCGTTAAATGCG	alt_3331_fdr	38	19	50	47	22	54	12	27	16	41
GACGTAGAGGTGGGTA	alt_3331_fdr	44	24	52	40	13	43	20	41	10	31
GTTTACTCACATTTAT	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTTGTCCTTTCA	alt_3331_fdr	55	27	73	87	38	46	35	52	34	64
CTGCGCTTTTAATCAC	alt_3331_fdr	57	21	59	53	25	61	21	61	26	50
GCAGAGGATCTGGTTC	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGCGCTCCACTGA	alt_3331_fdr	129	60	159	134	74	121	83	138	63	107
TGCACTCCACATGGAC	alt_3331_fdr	30	24	39	50	23	31	25	31	16	29
GCGGTCCCCGATAGGC	alt_3331_fdr	120	89	179	151	142	134	137	135	124	122
TCAGTAATCGAACTTG	alt_3331_fdr	115	53	108	92	34	99	46	83	38	77
TGCCCGCGCCCCATTA	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGAAATAGAGCCG	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTCGTGTATGGCA	alt_3331_fdr	23	15	54	38	21	29	19	38	22	37
CCTATGTTGTAATGCC	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTGGAGCCCATA	alt_3331_fdr	31	16	45	25	21	35	17	35	25	30
CGATGAACTCCTGAAA	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
AACTTGCTCGTTGTTT	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGGACTAATCTAG	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
ACAACATTACTCGGCC	alt_3331_fdr	137	54	161	161	53	152	54	117	76	133
TCCGACCTTTCTTTAT	alt_3331_fdr	103	52	144	132	56	123	71	115	67	113
GGACTTCAGGCGGGAT	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
CATTCGACTGTGGTGA	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TGATTATCAACGGGTA	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TCTATCCGGTCCTAGG	alt_3331_fdr	160	78	170	146	97	120	84	123	57	140
TTCTCACGAGGTTTGC	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
AAGAGGAGAGCGATAC	alt_3331_fdr	53	31	58	55	23	61	27	43	25	36
TCACTTCTTTATATGG	alt_3331_fdr	18	12	41	38	23	29	8	23	17	23
CTTTTCTTCTCTAGGA	alt_3331_fdr	121	57	137	119	48	93	56	98	40	93
ATTGTCATATCGCGCC	alt_3331_fdr	122	77	167	121	93	132	86	127	82	95
AACATTTAATTTCTTC	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCACGCTTTGTTC	alt_3331_fdr	86	44	89	95	59	64	43	72	50	58
CGGATCGGTGTAATCT	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTAGAGTTATGGGCTG	alt_3331_fdr	98	59	123	89	45	89	54	89	59	63
GTTATTTAAATCGCGG	alt_3331_fdr	9	2	6	6	6	3	1	10	3	8
GCTTAAACCACAAGCC	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGAGTAAAACCAT	ref_3331_fdr	400	318	549	465	355	403	383	423	402	361
GGCACGGGCTGGTTTA	alt_3331_fdr	4	5	6	6	1	1	1	1	1	4
CCTATTCTTCAGCCCA	alt_3331_fdr	21	39	36	46	50	32	70	31	43	28
CACTTTACTTATCGGC	alt_3331_fdr	126	67	178	151	62	156	72	129	71	135
AAGACCAGTTTTGGGC	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTGGACAGTCTTGCTG	alt_3331_fdr	49	21	49	44	30	52	22	45	36	54
CCTTTGCTTTCACTGT	alt_3331_fdr	22	19	15	18	30	14	19	17	15	20
TACTTACTAATGACGC	alt_3331_fdr	60	44	82	82	35	65	50	59	55	57
CTACTCATGGCCCTTT	alt_3331_fdr	64	37	89	66	32	66	42	72	24	47
CGCCGTCCTGGATGGA	alt_3331_fdr	91	65	125	99	55	74	65	101	57	53
ATTGTCTCCGTGGTGC	ref_3331_fdr	34	38	44	51	44	40	52	34	44	37
GATGTTCCGTCGTCCA	alt_3331_fdr	162	112	204	164	103	176	110	129	110	148
ACTACTCGGTGGTTTT	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
CTGATAGGCAATCAAC	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
GTCGATCGGTAACGGA	alt_3331_fdr	535	269	629	592	280	499	326	518	268	456
TAGAGGCTGGTTGGAT	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
GGCGGACTGGGAGATA	alt_3331_fdr	18	10	29	24	15	32	7	21	15	20
TTTCTGGCCGAGATAG	alt_3331_fdr	72	53	73	74	30	66	52	45	38	73
GTTACACCTACCGCTA	alt_3331_fdr	6	4	4	8	3	6	2	7	8	2
TGTAGCCCTATCATCC	alt_3331_fdr	23	11	20	17	6	13	7	12	11	18
TCAACTCAGATATTCC	alt_3331_fdr	331	181	418	351	162	309	176	297	157	282
CCGGAACGATTTCAGC	ref_3331_fdr	381	294	386	373	284	330	300	343	315	305
ATAATTAGGTCCACGT	alt_3331_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGGTATTCACGGC	alt_3331_fdr	160	81	190	199	71	163	94	170	99	149
TGTAATTTGGGGATAG	ref_3331_fdr	265	237	296	270	227	263	236	260	263	233
CATTGCCACTCCTGAT	alt_3331_fdr	98	38	91	111	55	76	48	90	50	93
GCCAAATAAACTAGGG	alt_3331_fdr	42	25	53	53	28	45	25	46	32	36
GGATAACCTAAATACC	alt_3331_fdr	99	55	108	110	61	87	50	101	64	85
GAACTTATGATGCAGC	alt_3331_fdr	330	173	429	390	184	333	210	342	211	319
TCATCTCTGACGCCCA	alt_3331_fdr	45	26	47	54	24	50	40	41	37	47
CCTAATCGTTCATCCG	ref_1201_negative	0	3	2	1	4	1	2	0	2	1
CGTACAGTGGGAACGA	ref_1201_negative	8	20	14	18	26	10	22	9	17	9
TTTCGTTCGTTTATGT	ref_1201_negative	4	8	6	8	10	2	9	6	11	2
TGCAACTAAGGCGTTT	ref_1201_negative	1	1	3	2	8	0	6	2	2	0
TCTTGACTTAATTTAG	ref_1201_negative	22	37	21	19	66	21	53	25	50	14
ATAAGAAATACTCGTC	ref_1201_negative	9	14	4	3	10	4	6	4	11	7
AATATACTGCTAACTT	ref_1201_negative	51	119	59	51	92	57	138	43	111	46
AGTTGCTTGTATTAGC	ref_1201_negative	5	22	18	22	33	12	23	11	29	8
CACTGTTTAGTGGTCA	ref_1201_negative	2	3	2	5	6	5	6	1	5	0
AATTTCGTACAGACAG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TAAATTTGTAGCGTCG	ref_1201_negative	48	83	42	36	94	51	88	41	99	29
AGGCATTTTTAAGTCG	ref_1201_negative	9	20	17	6	33	16	16	13	24	7
TTTAATTTTAATGACA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GACATGCTCTTTATGT	ref_1201_negative	37	65	31	30	49	21	84	24	60	22
CTTAGTGTTACGTATG	ref_1201_negative	2	5	1	0	2	3	6	4	6	0
CTGCAGGTTGTGAATT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GCACAATTGACTTTTC	ref_1201_negative	41	87	46	29	89	34	74	31	78	33
TACGTTAGAACATTCA	ref_1201_negative	3	19	4	4	18	5	17	5	18	6
CTGCCAGTCGGGAAAG	ref_1201_negative	29	70	36	32	81	20	81	24	76	14
TGGGACATTTAATGGT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GTATGTCATTCACTCT	ref_1201_negative	11	18	11	6	15	7	12	1	10	5
GGCGCATCTCGTTACA	ref_1201_negative	18	33	19	13	28	12	52	10	35	14
GCGCGACCGGCGTGTG	ref_1201_negative	21	50	23	20	51	13	45	16	71	15
CGCGTTTAGATCAGGT	ref_1201_negative	32	46	27	24	34	30	55	22	50	16
TTATTGTGGGTGAACG	ref_1201_negative	34	83	34	41	89	41	96	37	106	28
GAGGTTTTCAACTTCG	ref_1201_negative	1	7	6	5	6	1	4	1	3	2
AGGGATTCCGCCTGTT	ref_1201_negative	4	8	1	1	7	1	5	6	6	2
GCGTACTTCTAGGTTT	ref_1201_negative	15	47	12	12	38	14	34	20	39	25
TAGGGTGTCATTAGGG	ref_1201_negative	12	21	17	11	18	16	27	5	40	10
TAGCATGTCCTTACCC	ref_1201_negative	17	94	41	31	107	25	80	32	82	22
GGGCTTAGGATAACAC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GCACTTTCCGCGGTTG	ref_1201_negative	19	41	11	23	61	18	42	17	74	20
CATTATTCACCTCGCA	ref_1201_negative	13	53	25	19	56	19	53	16	58	28
TTGCCTTTCGCCTAGA	ref_1201_negative	5	13	5	10	17	5	17	5	15	1
TTTTCAGGCGCTTCTG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TTGAAAATTCGGTTTA	ref_1201_negative	20	51	34	21	37	28	58	30	48	19
TCAGTGTGCCTATCCG	ref_1201_negative	2	13	6	3	5	3	6	4	8	5
TACCAATATTTATTAC	ref_1201_negative	5	10	6	6	13	5	11	2	14	3
TTTTTATAAAGAGTAT	ref_1201_negative	5	19	9	11	13	9	18	5	25	9
TTCTACAACGCAATAT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GCAACTGCCAATACCC	alt_1201_negative	30	56	45	30	64	30	66	16	60	20
TACCCCTTAGCTCATG	ref_1201_negative	103	214	120	113	256	113	248	97	261	91
TTAACTTATGGGCTAT	ref_1201_negative	4	9	2	5	5	8	8	1	6	1
GCTCTGCCATTCTGCC	ref_1201_negative	7	30	17	12	34	6	53	17	48	9
TTGGTCCAACCGGTGT	ref_1201_negative	7	9	5	2	12	4	9	7	10	7
ATAATCTATAGGTCAG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
ACGAGTTTGCCGATGG	ref_1201_negative	0	0	1	0	0	0	0	0	0	0
ACAGGCCCAAGACCCT	ref_1201_negative	2	8	6	2	5	2	6	4	6	4
GTTTTCCCCGTACTCG	ref_1201_negative	5	31	2	8	20	2	23	4	29	2
TAATCAATCGAGCTAG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TTTGTTAGCAATTCCA	ref_1201_negative	8	16	3	10	16	5	15	11	17	7
ACTTACAAGCTTCTAT	ref_1201_negative	28	39	39	30	58	32	54	19	57	33
GTCCATCGTACATAGA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TCTGTATTGATAATTC	ref_1201_negative	13	42	24	9	35	13	37	14	47	17
AATAAGCCTTATAGCA	ref_1201_negative	31	57	35	21	84	20	93	31	71	28
TCGTTCCCAATAATAG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GGCGGGCGCCTCTCGT	ref_1201_negative	41	73	60	30	55	38	65	27	77	28
CCGTCAGGTGTACTGC	ref_1201_negative	14	30	19	15	49	20	32	7	51	12
CGCCTCTCTGTGTCTT	ref_1201_negative	21	51	14	17	30	10	32	12	39	6
AGGGCGGCAGTCTACT	ref_1201_negative	10	20	17	13	17	4	34	13	36	8
TCTAAGTAGTTCCCTG	ref_1201_negative	27	52	23	26	66	23	59	21	65	13
TAACCTAGGTTCATTG	ref_1201_negative	19	31	13	15	29	5	34	9	43	13
AACGGCATCCACGTGG	ref_1201_negative	9	23	20	10	39	10	24	11	30	13
GGGTAGTGCTTGCACT	ref_1201_negative	7	37	12	9	47	15	32	9	42	14
GAAGGGTGCAGAGAAA	ref_1201_negative	8	22	13	4	30	13	29	13	21	14
CATCAGTATTTTGTCA	ref_1201_negative	63	142	74	54	89	54	163	74	158	36
CCGTATGCCCACCCCC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
CTCCAGCCTGAAATGA	ref_1201_negative	24	92	23	22	78	25	101	20	78	11
GTTTTCGTAGTGTTCT	ref_1201_negative	0	1	1	0	0	1	0	0	1	0
CTCTGCGATGTTAACG	ref_1201_negative	7	21	9	4	14	4	13	8	16	8
CAGCCGACCATTGTAA	ref_1201_negative	6	13	2	7	20	2	16	6	17	11
CACCTTTGTTGTCTCC	ref_1201_negative	8	21	12	11	26	9	17	13	14	11
CGTTAATCTCCTGAAC	ref_1201_negative	2	9	12	5	12	6	19	10	18	5
TGACTGGTCCGAACAT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GATGAGACTACGTGGT	ref_1201_negative	7	17	12	11	25	10	25	13	30	7
TAGACCTAGCTGTTCC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
ACTCAGGGATTGTCCA	ref_1201_negative	22	77	25	30	79	25	63	20	74	25
CCGCAATCCCTGTGGA	ref_1201_negative	9	38	14	11	24	17	31	12	47	6
GATTAAAGCTTTGGGA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TCGTACCTGTAAACCA	ref_1201_negative	11	25	16	17	18	8	14	11	41	7
TCTCACCTGTTCTCTT	ref_1201_negative	1	2	0	0	3	0	1	1	3	0
TTATCGCAGTTACCAG	ref_1201_negative	62	130	92	67	158	71	136	74	171	47
TTTACCGCTTTCGGTC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GTAAATGGTCTGGACA	ref_1201_negative	9	13	9	12	10	9	13	5	13	7
TCTACTCAAAGTCGAC	ref_1201_negative	15	33	24	24	29	20	29	11	48	17
TAANCAATCGTGCTAG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TTTCTAACGACGGGTG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TTCAAGCTGGACAATG	ref_1201_negative	22	39	21	17	40	26	48	15	43	23
TAGCCCCTCTTTGATA	ref_1201_negative	9	15	11	11	24	5	17	13	19	12
TAGTAAGGTGTCTTCT	ref_1201_negative	3	7	4	7	7	3	7	3	16	2
CCCGTTCGCGCCTAAG	ref_1201_negative	16	75	27	28	49	22	55	29	65	33
CAATATGCTAACCTGC	ref_1201_negative	2	7	0	1	7	4	10	1	9	6
CACATTGGTTGCATCC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GTATCAACATTTTGTG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GGTATAATATAGGTAT	ref_1201_negative	18	53	19	18	42	20	50	18	56	25
GTTTAAAGCTTTGGGA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
ATGGTCTGGTTCCTAG	ref_1201_negative	9	12	8	9	10	7	9	4	14	8
TTTTTAGACTCTTTCA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
CGTTACCTGGCTGATC	ref_1201_negative	15	67	17	19	81	21	71	21	67	18
TGATCTGTTAAGCGAT	ref_1201_negative	32	52	35	23	45	17	48	26	54	20
CTTTCGCCTAAGATGA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
CCCTGGGAGTTAGGAG	alt_1201_negative	33	114	66	53	104	48	106	45	100	47
CTTTGGTCAATGTTTA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
AAGGGACTCATGCCCA	ref_1201_negative	1	7	3	3	9	2	6	5	4	4
ACCGCCTCGGCTGCGG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TGAGTCTTCGTCGGTA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
ATATGTTTATCCCAGT	ref_1201_negative	0	7	1	0	3	1	1	0	6	0
GCACGAGCTTGATTGG	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
ATGACTGATATGAGAA	ref_1201_negative	5	6	2	0	10	2	8	4	14	8
GTAGCCAAGGTATGCT	ref_1201_negative	1	10	5	6	4	9	8	3	6	4
ATTGATGTTGATCAAC	ref_1201_negative	12	33	19	7	25	11	33	13	38	16
TTTGATCCGCACGATC	ref_1201_negative	6	16	9	6	14	6	17	2	13	6
GATGGCTAACTGATCT	ref_1201_negative	12	23	12	10	18	9	18	5	16	5
AGCTAGTCTGTTAAAC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
CCTACATTTGTGGTTA	ref_1201_negative	136	365	159	140	316	138	329	113	361	125
GCTGAAAGCTTTAAAT	ref_1201_negative	13	22	18	7	23	10	16	16	25	5
GCGAGTGCGGTTTGGG	ref_1201_negative	0	1	2	1	3	1	4	0	2	0
CGGTTTCGCTTGTTAT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
CACCTACCATCAAGCA	ref_1201_negative	17	96	13	15	107	21	136	20	113	13
AATCTATTGGACGGCG	ref_1201_negative	20	37	19	20	33	14	50	11	43	14
GTTGTCCGGTTGTTGT	ref_1201_negative	3	15	3	3	4	4	10	2	7	2
TCACAGTCTATTAAAT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
CCCTAGGCGCTCTCCA	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TGTGTGCCTCATTTAT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
CACTGCTGATTTCCAC	ref_1201_negative	1	2	2	2	4	2	3	0	9	4
GCAATCACTTACTTAT	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
ATAAGTCTACGCGCTT	ref_1201_negative	5	15	1	5	17	5	12	6	10	6
TTCTTCCGAGGATGCG	ref_1201_negative	14	19	8	6	13	8	22	9	18	6
AATATTCCTGCGGGAT	ref_1201_negative	12	28	11	19	13	12	28	9	36	16
AAAAAAACTAGATCCC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
TCGCGGAGACGCTTGA	ref_1201_negative	18	27	15	11	27	15	29	8	35	14
TAGTTGCTCCACGATC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GCGTTTCTGCGGGCTT	ref_1201_negative	17	59	21	26	64	31	54	14	74	29
TGGGTGCATCGATCAG	ref_1201_negative	16	10	19	17	38	9	26	17	26	17
TACATGGTACCAGTTC	ref_1201_negative	0	0	0	0	0	0	0	0	0	0
GTTCACCGGCTTTGCG	ref_1201_negative	5	12	4	7	18	3	9	3	27	2
TCTACTCTTAAATGGG	ref_1201_negative	14	27	10	8	17	14	25	22	35	13
TATTCTGACCCAAAAG	ref_1201_negative	24	70	29	29	56	29	49	22	67	34
TGTATTTGTGGATGCA	ref_1201_negative	8	17	10	10	16	6	26	7	25	10
AGTGTACGTTCTCTTG	alt_2783_fdr	9	4	11	6	11	7	6	8	21	10
TTAACGAAACACGTTT	alt_2783_fdr	7	9	14	4	1	5	10	7	12	9
CAAAGACTTCGTCAAT	alt_2783_fdr	13	16	12	10	16	13	15	11	21	16
GTTACGTTGCTAGAAA	alt_2783_fdr	2	2	5	2	12	3	8	3	7	4
ATTGTCATCATGCAGG	alt_2783_fdr	52	84	60	57	76	47	94	59	83	58
ATTGGATATAATGAAA	alt_2783_fdr	27	44	28	18	44	24	36	18	38	17
GGTCGTAACGTTAGTG	alt_2783_fdr	5	13	5	5	13	12	11	10	6	7
TAAACTGACACTCAGT	alt_2783_fdr	68	84	80	49	109	62	126	37	131	53
GTTGTTATGGCGCACT	alt_2783_fdr	6	5	7	4	12	9	13	6	8	6
ACGCCTTCCACACCGA	alt_2783_fdr	11	13	9	12	12	12	14	11	18	16
TTGGACCATCTCGGCG	alt_2783_fdr	39	58	64	60	46	56	57	59	55	57
GCAGATAGCTAATCCC	alt_2783_fdr	40	64	49	49	52	39	53	54	50	34
GGCGCAATTTCCTGGG	alt_2783_fdr	9	20	3	11	18	13	8	8	14	9
TCGCACACTTTTGCCC	alt_2783_fdr	1	6	3	5	5	4	7	4	5	2
TGCCTACCGTGCTTAG	alt_2783_fdr	12	12	7	9	24	9	16	13	19	11
ATCGAGGGTCCCTCCC	alt_2783_fdr	4	1	10	4	1	8	1	7	8	8
GAAACTATTATCCGCG	alt_2783_fdr	3	15	10	5	5	9	9	6	9	7
TCAAGCGCTATTAAAA	alt_2783_fdr	25	24	17	19	18	22	21	14	30	13
GTATTGTACCCATCGT	alt_2783_fdr	3	4	4	1	2	2	3	2	3	1
CGCCAATCTTTTCAGG	alt_2783_fdr	2	10	6	12	7	8	18	7	19	3
CACCGGCGTATGTTAG	alt_2783_fdr	39	53	45	46	83	38	88	38	61	25
CCCCTTCGCTACTATC	alt_2783_fdr	27	49	51	38	31	39	43	24	46	35
TGCACAGCATAACTTG	alt_2783_fdr	5	7	2	7	7	6	10	6	5	8
TACCGTTAGCTTGTGT	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCTCGAGGACCGG	alt_2783_fdr	8	6	8	5	5	3	7	4	7	8
ACGTATTGCTACACAC	alt_2783_fdr	83	108	110	98	107	106	128	96	142	115
GTTGAGCTTCGCGGGT	alt_2783_fdr	11	25	16	13	21	17	26	23	29	18
TTTGTCGTCTACTTGG	alt_2783_fdr	40	82	58	51	62	45	85	51	72	46
TTTCTTGGTACACTTA	alt_2783_fdr	2	2	2	2	4	2	7	2	3	2
CTTGTTAGTATTACTT	alt_2783_fdr	17	23	13	20	28	11	28	9	22	22
GTCTCATAGCACGTCA	alt_2783_fdr	22	31	26	16	36	22	33	30	23	13
TATAACGCAAACAACT	alt_2783_fdr	12	18	17	20	15	11	9	10	16	10
TCATTTACTCGTGCTT	alt_2783_fdr	12	22	26	24	26	23	37	20	43	16
ATCCGTCACTGCTCCC	alt_2783_fdr	66	109	82	65	94	67	83	64	100	69
GACTATCTAGTTAAGT	alt_2783_fdr	31	51	41	23	50	17	44	34	57	17
TTTTGTTTGTGTGGCA	alt_2783_fdr	68	107	106	63	107	74	104	71	88	72
TTCATAAATATCGGTT	alt_2783_fdr	30	35	32	35	47	24	27	31	36	29
TATAATGAGAGGGTCC	alt_2783_fdr	41	55	52	50	61	47	44	38	67	50
CGCTTCAGCCTGTGTA	alt_2783_fdr	12	50	27	10	59	13	46	12	65	15
TTCGGCGATGAATATC	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
TACTTTCGGCCCCTGG	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
GAGAGGGGGAACAACT	alt_2783_fdr	5	3	10	4	3	6	10	3	10	3
GCTATGCGTTCGTTTT	alt_2783_fdr	1	3	4	2	5	3	4	3	2	3
ACTCATGCCTCCGTCT	alt_2783_fdr	4	17	6	6	9	4	13	5	7	5
TACCCAGCCAAAGTCG	alt_2783_fdr	5	2	0	3	4	1	8	1	5	2
ATCAGACGGCACAGCG	alt_2783_fdr	8	15	13	12	15	4	14	5	11	8
GTTCATCTAAATCGCA	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCTGTATCTTGT	alt_2783_fdr	9	5	10	10	7	9	12	5	7	10
CTTAACTTTGGATAGG	alt_2783_fdr	46	74	49	38	89	29	61	43	73	43
TGAGTCTAGACTACGT	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
AACAATATCTATGCTC	ref_2783_fdr	64	115	97	83	126	97	111	72	112	70
ATGATAGCCGCTGCCG	alt_2783_fdr	2	2	2	2	0	0	3	1	5	4
CCTTATAGGAGTGTTT	alt_2783_fdr	12	35	14	21	29	18	53	11	27	17
CCGACTGAAGCGCTCG	alt_2783_fdr	31	41	51	35	43	26	39	34	35	19
GACTTTTTAACTCTAC	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
GTGATCCTCGTTGAAA	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
GCCTACCTCAGGCACA	alt_2783_fdr	14	19	25	19	25	16	24	9	10	15
GCGCGCTTCATCAGTT	alt_2783_fdr	2	5	4	3	3	2	3	2	10	1
TGTCATACTAAATCGC	alt_2783_fdr	4	6	6	4	6	5	11	3	11	1
CGATGCTGGTTTGACA	alt_2783_fdr	10	14	13	6	22	13	12	10	11	10
ACTCAGTTCGCGTGTT	alt_2783_fdr	61	94	73	45	99	53	91	42	103	38
AATACTAGGGGGGACT	alt_2783_fdr	31	28	26	33	38	24	37	28	36	32
CCCCTTTCGGCCACGT	alt_2783_fdr	38	41	57	31	47	31	46	30	64	22
TTGGCCTTTGCCGGAC	alt_2783_fdr	10	10	11	11	21	3	7	19	9	9
GTAGGGTTAGCTAAAA	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
ATCACGTCACTCGATT	alt_2783_fdr	1	8	3	1	3	9	4	2	2	2
TCAGTTGACTTCGTGT	alt_2783_fdr	26	35	24	25	47	17	52	28	32	23
GTTCGTGGGGGTTCTG	alt_2783_fdr	8	19	14	5	10	10	12	14	13	8
CTACGTTGCTATTCTT	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
ACGTATTGCTACGCAC	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
TAATAACCCATCACAG	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
CCACCTAGCTGAGCCG	alt_2783_fdr	27	49	65	37	71	27	60	33	81	26
TGGTCTTTTCAACGTA	alt_2783_fdr	131	194	152	118	190	149	161	107	180	110
ATCCACGACTAGACTT	alt_2783_fdr	21	29	23	18	32	17	41	16	35	23
GTGACGATCGCAATGG	alt_2783_fdr	19	24	23	20	30	30	20	16	26	19
TATGAGACCGTCCCCT	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCGCAGTTGGATT	alt_2783_fdr	19	25	20	11	22	8	28	18	27	7
TCTCGGCATGGTATCG	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
AATTGTACGTAATTAT	alt_2783_fdr	53	63	56	46	64	56	71	48	80	49
TCGGCGGAAATGTGCA	alt_2783_fdr	37	24	23	17	32	20	39	34	24	26
AGTCGCGCTGTCTTCC	alt_2783_fdr	0	0	0	0	0	0	0	0	0	0
ATCATAGGTAGCATTA	alt_2783_fdr	63	48	55	38	79	47	70	41	93	28
TTGCACCTTGACCGTC	alt_2783_fdr	10	39	12	13	53	12	36	7	36	11
AGTTAGCAACTTCTAT	alt_2783_fdr	11	28	13	8	13	8	13	3	8	6
TATGTAATTTATGAAT	alt_2783_fdr	2	3	3	1	1	0	4	2	0	2
CGGTAATGTAGACTTA	alt_2783_fdr	20	10	14	15	19	19	20	6	15	13
TGTGTATCGATCTTCG	alt_2783_fdr	29	32	26	20	15	17	29	15	30	19
ACCTTGTTATCAATAA	alt_2783_fdr	58	81	55	39	58	31	79	50	73	49
TCATGCCATCCTTTGT	alt_2783_fdr	5	11	5	5	9	10	10	10	7	8
CTTCAAAACGTTTAGG	ref_5853_new	4	4	6	4	10	1	6	5	7	4
GAGGATCAATGCGCCC	ref_5853_new	57	70	67	56	61	54	85	47	91	47
GTTGTAGATTGAAAGA	ref_5853_new	40	47	57	32	61	53	65	29	71	29
GAAGCTCGGCATATTC	ref_5853_new	0	0	2	3	3	1	4	4	3	2
GGCTGCCGCTGTATCC	ref_5853_new	0	0	0	0	0	0	0	0	0	0
CTTAATGATATGTGCT	ref_5853_new	0	0	0	0	0	0	0	0	0	0
ATAGCTTTCAAAGCGG	ref_5853_new	17	31	18	26	29	14	19	10	27	23
TCGCGTAGTCATGGTA	ref_5853_new	24	40	32	31	50	23	45	25	38	24
CCATCCTACCTTTGCA	ref_5853_new	46	108	43	51	93	26	95	46	105	41
AATTGGATGCAATGTA	ref_5853_new	1	2	1	2	3	2	1	1	2	3
AAACTCACTCATAGAA	ref_5853_new	17	27	31	22	35	13	31	27	32	12
AAAGAGAAGCAGGGGT	ref_5853_new	15	10	17	8	13	10	16	12	14	13
CATCTCGTACCCTTGT	ref_5853_new	48	64	54	59	64	48	62	42	81	24
GCTAATTCCCGTTGAC	ref_5853_new	19	35	29	24	39	15	43	7	35	23
AGACCATAGTTGGTTT	ref_5853_new	32	57	29	28	53	26	50	36	70	32
ATACTCTAAATCATTT	ref_5853_new	12	12	15	17	12	8	15	8	18	17
TTGATTAGGTCGGGCC	ref_5853_new	22	41	16	9	48	15	40	14	46	17
ACTCTACTGTTTTTTT	ref_5853_new	0	0	0	1	0	1	2	3	1	1
TGTACTTCTAGAGTCG	ref_5853_new	0	0	0	0	0	0	0	0	0	0
GTATAGTGTCTTATAA	ref_5853_new	0	0	0	0	0	0	0	0	0	0
GTCACGCGGTGGTTGT	ref_5853_new	9	14	13	12	15	8	12	15	10	14
GAACACGCGGTTTTCG	alt_5853_new	19	35	50	32	46	33	35	27	36	13
TAATCATAATTCTTGC	ref_5853_new	78	95	94	68	75	70	93	52	88	82
AAGGCTCGAACCTGCT	ref_5853_new	0	0	0	0	0	0	0	0	0	0
TTACCAATTTGGTCTG	alt_5853_new	75	114	83	57	90	62	110	43	108	52
TTATTAATCCGTCAGC	ref_5853_new	0	0	0	0	0	0	0	0	0	0
ATTACACGGAAACGAT	ref_5853_new	52	90	53	43	89	62	80	50	82	50
AGCCTGCTAGTAAGTC	ref_5853_new	55	74	75	59	89	41	90	39	95	49
TACCTTAGCCATATGT	ref_5853_new	8	16	9	4	16	9	11	11	14	7
GGCGTTCCAGCACGTG	ref_5853_new	8	12	16	7	21	11	11	4	12	8
CGTAAAACATAAGCTT	ref_5853_new	0	0	0	0	0	0	0	0	0	0
GGCCCGGCACCTCCAC	ref_5853_new	11	15	20	13	12	12	28	12	16	9
CAAATTGTCTGGTTTC	ref_5853_new	14	8	10	12	7	8	14	2	10	2
GTTCTAAGGGCCCATT	ref_5853_new	0	0	0	0	0	0	0	0	0	0
TTTGTTTGGTCCCAAT	ref_5853_new	33	41	19	20	29	25	38	30	36	26
TACCATGGTGCTTATC	alt_5894_new	1	10	4	1	4	2	11	0	7	3
GCCCCATTCGCCTTGT	alt_5894_new	43	63	40	30	54	37	60	41	54	43
CACGTACATGTCTGTA	alt_5894_new	0	0	0	0	0	0	0	0	0	0
AGGCATATTAGTTAAT	alt_5894_new	0	0	0	0	0	0	0	0	0	0
CGAGCGGATTCATGGC	alt_5894_new	9	13	19	14	13	21	22	3	15	16
TAAGCTGTATGTATAA	alt_5894_new	0	0	0	0	0	0	0	0	0	0
CTACTTATGCGATGTA	alt_5894_new	9	20	24	12	21	8	15	9	16	8
TCTCTACGACTCATAG	alt_5894_new	20	66	41	32	75	33	73	16	93	37
AACTCGGGTGACATCT	alt_5894_new	9	20	8	16	19	11	18	8	15	11
AGGGCACATTAATCGA	alt_5894_new	36	44	38	28	27	23	37	27	37	21
GATAGTCACTTACTTT	alt_5894_new	0	0	0	0	0	0	0	0	0	0
TTTCATATATTGTATA	alt_5894_new	0	0	0	0	0	0	0	0	0	0
TTGCGTAGGTGATTAT	alt_5894_new	15	25	27	23	19	21	27	9	28	11
TACGTGTTATCATCCC	alt_5894_new	0	0	0	0	0	0	0	0	0	0
TACGGCAGTTCTAACG	alt_5894_new	0	0	0	0	0	0	0	0	0	0
TGCTCTCAAGTATCCT	alt_5894_new	0	0	0	0	0	0	0	0	0	0
GCTCTTCCCAACGGCT	alt_5894_new	0	0	0	0	0	0	0	0	0	0
TTTGTTTTCAGCCAGA	alt_5894_new	19	9	8	6	9	5	17	10	18	8
TGTGAACGAAGTCTTC	alt_5894_new	21	48	32	30	44	23	50	35	52	29
GTGGTCGAGGTATGCC	alt_5894_new	0	0	0	0	0	0	0	0	0	0
GGAGTATGGTTTATAC	alt_5894_new	38	67	54	28	59	33	80	31	60	37
TATAATTGTGTCCGAC	alt_5894_new	50	84	82	69	102	69	101	58	96	58
TCAGGCATAGGAGCCG	alt_5894_new	13	16	9	15	17	6	11	8	18	6
TGATTGCAAAATAAGC	alt_5894_new	0	0	0	0	0	0	0	0	0	0
CGCGGAACCGAGTAAG	alt_5894_new	19	58	21	22	27	21	42	20	48	16
GGTTCGTCCCATAACG	alt_5894_new	21	25	25	22	35	23	27	22	31	23
CATATCCTCCTAGTAC	alt_5894_new	14	35	14	17	43	11	30	17	36	7
GGCCAATATATTTTCG	alt_5894_new	3	6	0	0	4	1	2	1	3	2
CAGGGCCCGCATCCGT	alt_5894_new	14	19	25	10	20	9	21	9	17	13
TCTTGAAGCGACACTT	alt_5894_new	0	0	0	0	0	0	0	0	0	0
GCCCAATGACATTACA	alt_5894_new	11	35	26	16	47	13	45	17	31	15
GCACCGCAAATTAACG	alt_5894_new	48	75	81	54	83	64	78	61	106	63
CAGTGTTGGGACCTTC	alt_5894_new	7	22	15	18	17	16	31	9	18	17
CCAGGTCTTTCATCAT	alt_5894_new	2	20	14	6	6	12	14	5	21	9
TCTTCGCTCCATATTT	alt_5894_new	116	164	140	127	160	101	157	112	222	98
CCATATACTCGTGTAG	alt_5894_new	0	0	0	0	0	0	0	0	0	0
TTTAGATGGGCGTTTC	alt_5894_new	0	0	0	0	0	0	0	0	0	0
AGGAATATTAGTTAAT	alt_5894_new	0	0	0	0	0	0	0	0	0	0
CTCCGAAAGTTTACCG	alt_5894_new	75	133	100	63	116	68	142	60	167	59
TATGCTCTCTAGTGTC	alt_5894_new	24	43	46	29	51	19	50	26	48	33
GTCTATACGCTGTTCG	alt_5894_new	40	85	41	36	69	23	80	26	86	34
AGGATGCGGATTGTAG	alt_5894_new	5	7	1	4	4	1	4	1	4	1
ATATCCATGCGACCTA	alt_5894_new	0	0	0	0	0	0	0	0	0	0
AGCATTTTTCATATCC	alt_5894_new	35	55	30	23	44	32	62	31	73	30
CTGGTTGGGTACTGCG	alt_5894_new	4	12	12	6	15	7	21	10	15	6
GGCGGAGTCCGCTCTC	alt_5894_new	43	52	57	49	61	55	60	44	81	38
ACCAAATGTGGCGCTA	alt_5894_new	17	25	20	19	22	14	27	17	27	17
ATTGCAATCGCCCACA	alt_5894_new	12	13	7	12	15	7	15	8	25	5
TTATATAGTATTAGGT	alt_5894_new	19	17	21	20	24	14	24	11	25	16
ACTTTATATACAACAC	alt_5894_new	0	7	3	5	4	6	4	2	6	0
GTCCCCTCTGCTAGAA	alt_222_fdr	43	34	45	38	46	39	48	39	32	33
ATTCCATACGATCTTG	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TACCCGTCCGTGACAA	alt_222_fdr	20	36	38	31	58	39	54	32	52	22
CATTCCTCGTGCTCTT	alt_222_fdr	69	66	68	73	63	58	76	40	63	59
ATGGCGCAGTAATTCG	alt_222_fdr	338	244	425	396	279	407	299	347	306	300
GTGGATTAAGGCGGTA	alt_222_fdr	67	50	88	63	59	62	62	56	68	62
CCGAGGTTCCATGTAA	alt_222_fdr	134	129	166	123	133	105	151	145	139	125
CTTAGCACAATTCTTC	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTAGTGGTAGACT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGGTAATCAACGG	alt_222_fdr	43	36	55	50	32	37	35	43	36	37
AGAGCAAGTCAGTGAG	alt_222_fdr	2	1	0	1	4	2	3	7	2	3
CCTGGCGACGTGAACC	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
ATTACTTTATAACGGC	alt_222_fdr	49	36	58	47	36	40	41	37	38	46
CGCAAAATGGATTAAT	alt_222_fdr	57	42	58	49	35	49	44	51	44	42
GAGGGCAGTAGTTGTT	alt_222_fdr	34	27	42	33	36	38	33	41	26	33
GGGTAGTGGGCCGGGT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCAACCCGAGCA	alt_222_fdr	5	10	14	13	24	13	17	6	16	16
AAAGTTTGGCTGCCTT	alt_222_fdr	34	26	45	46	48	36	33	32	35	41
CATGGTTATCCAACAA	alt_222_fdr	9	10	14	27	17	15	12	36	8	16
TAAGATCAGTTACGTT	alt_222_fdr	74	52	67	67	60	49	58	70	80	62
GCAAGTCTGCATTGTT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
CATACGATTTGACGCG	alt_222_fdr	128	121	169	150	103	127	121	129	138	125
GCTAGTTGAGAGACAA	alt_222_fdr	0	0	1	1	0	0	0	0	0	0
AATCCACAGGGAGCTG	alt_222_fdr	64	35	82	90	47	63	61	71	46	55
ACCAATGTTTTACCGC	alt_222_fdr	18	10	10	17	17	17	16	13	21	13
CATTTTTCCGCGATTA	alt_222_fdr	115	88	120	110	102	84	86	108	99	96
TGGTGTTGGAATTTGG	alt_222_fdr	78	70	118	67	65	75	53	71	65	56
CGATCTCACAACCTCG	alt_222_fdr	98	65	97	87	67	97	68	84	83	91
ATCTCTATGGTATGCC	alt_222_fdr	227	162	244	200	183	147	170	169	201	176
TTCCATAACGGTCCTA	alt_222_fdr	54	42	69	53	53	44	58	57	33	44
GTATCCGGATCGTGGA	alt_222_fdr	8	15	18	18	6	10	9	12	11	12
GTGCGACTCTGTGTAT	alt_222_fdr	24	11	20	7	17	16	19	9	7	17
CACGTCAGCATAGCGG	alt_222_fdr	14	9	19	21	15	17	8	20	13	17
GTCTTGTCCTCAGGTA	alt_222_fdr	101	83	105	81	67	82	63	83	76	72
AGACTCGTAAGCTTTT	alt_222_fdr	52	43	95	80	76	55	65	66	61	83
CGATAACCTTACGGTA	alt_222_fdr	26	17	30	22	18	44	18	28	25	17
CCGGCGCTACTTCCTA	alt_222_fdr	14	9	24	22	15	17	19	29	16	12
ACATCGGCTTTTCTTT	alt_222_fdr	62	42	70	64	52	43	45	49	36	61
GGGACTGGATGTTACA	alt_222_fdr	40	38	53	37	34	42	46	49	46	37
TGTTTTTCTCATGACG	alt_222_fdr	170	154	243	196	158	178	139	193	161	159
TATAATCATAACCATC	alt_222_fdr	9	16	8	16	18	9	17	7	12	6
ATCGGCAATACTTTCG	alt_222_fdr	533	366	670	557	349	494	411	507	416	494
AACCTGGTATTTGGGT	alt_222_fdr	11	13	19	9	13	17	15	13	8	11
TGGCGATTCCACTGGT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTGATGCCTCGAC	alt_222_fdr	41	51	58	43	38	37	63	41	50	52
TTCGAGTCTTTGAATT	alt_222_fdr	30	26	41	37	39	33	36	42	43	24
CAGTTGTGGCTACGTC	alt_222_fdr	30	25	43	36	25	28	25	31	35	24
ATAACGTTCTTTGAAT	alt_222_fdr	141	92	131	145	122	125	140	117	148	112
TCCCTCACAATACTCT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
CGACATAACATCTGGG	alt_222_fdr	30	20	39	27	27	23	31	25	30	30
GTTTGCATCACACCGA	alt_222_fdr	132	137	186	151	114	138	150	123	151	111
TAGGCCATATGGGCTG	alt_222_fdr	69	69	92	74	48	70	53	62	71	53
ACCACAGTCTTCACCG	alt_222_fdr	27	26	30	28	27	17	23	24	27	27
TGGTGCACTACAGACC	alt_222_fdr	18	16	35	26	21	27	26	22	30	20
TTTGCCCCCTTTTCGG	alt_222_fdr	162	110	203	162	135	166	147	171	151	156
CATCTAGACCACCAGT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGTTACTTGGTGT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTATAGTGTCCTT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
CTTAAAGAAGGTAGTG	alt_222_fdr	275	218	378	303	248	269	259	284	272	271
ACTAGGGGAAGTAGAT	alt_222_fdr	15	14	12	10	6	6	19	13	11	22
GTGTCGAATTCGACAG	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGAGTATCAACAA	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
TAACCATGTGCTTTCT	alt_222_fdr	17	13	8	16	18	7	11	15	18	17
TCGTTCGCATGTGTGT	alt_222_fdr	43	41	58	48	55	35	50	40	58	54
GTTACTGGTGGCGTAT	alt_222_fdr	132	99	162	128	144	131	96	133	125	99
TATTCTTCTATAATTC	alt_222_fdr	3	7	6	8	8	5	5	4	3	5
AGGTGGATTCAATGTT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
ACTACTTGGAATTGTG	alt_222_fdr	8	11	16	11	12	10	10	8	9	12
TATGCCTATAGCTTGT	alt_222_fdr	0	0	0	0	0	0	0	0	0	0
ATACAAGTAGTAAGCA	alt_222_fdr	51	41	62	40	35	40	29	45	32	42
TCCTGAGCCACCTCAC	alt_222_fdr	13	16	14	15	12	10	22	13	16	14
GGCCAGCCAGGAAGAT	alt_222_fdr	59	58	70	94	80	53	91	49	53	67
TTCAACCTACGCGGGT	alt_222_fdr	50	39	75	66	58	41	78	77	67	46
ACTAGCTATTGGCAAG	alt_222_fdr	27	20	32	25	21	31	30	16	27	25
CACGGTTAGAGTCACG	alt_222_fdr	47	29	50	33	46	33	29	31	37	29
TGCATTAATTACCGAA	alt_222_fdr	14	17	17	12	8	13	5	18	12	14
GTTATTTGGGCAGTGA	alt_222_fdr	206	171	239	198	142	200	156	165	131	176
CTAATATTTTCCTTGG	alt_222_fdr	9	4	12	5	2	4	3	2	2	3
CGACTACTTCTTAGCA	alt_222_fdr	35	23	30	24	21	24	30	28	20	24
CGACCTAGAAAACGGC	alt_222_fdr	43	21	35	34	24	38	25	27	34	40
CCCACGGCTTAGACTA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
GTGTACGTCTAGATAA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TCCTAAACAGGTTACG	alt_3331_RC	19	14	21	20	15	18	11	14	17	14
TCCCCCCTTCCTGGAG	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
AGGATCGAGTCTAAAG	alt_3331_RC	13	4	18	12	9	10	8	10	6	10
ATTGTGTTCGCCTTGA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TCCGATCAGTGACCCG	alt_3331_RC	50	41	69	66	60	49	71	47	69	48
CTGCCGTCTATTTTCC	alt_3331_RC	0	0	0	0	0	0	2	0	0	0
GTGTGACCTAGCATGA	alt_3331_RC	6	4	12	5	7	8	8	3	10	12
TAAATAGTTGTAACAG	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CGAGGTGCCCTACTCT	alt_3331_RC	15	13	20	17	13	12	20	14	7	6
AGTTATTTCGGGGACG	alt_3331_RC	313	260	399	384	293	365	253	327	281	296
CCGTCAGACAGTAAAT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CGACGAATCCTAACAA	alt_3331_RC	24	24	45	23	25	26	19	23	10	25
TTTCTACGGTCGAGTA	alt_3331_RC	18	16	26	16	16	18	14	12	9	18
GGCCATTTCTACGCGG	alt_3331_RC	58	46	59	56	35	66	57	48	31	53
GCAGTATAAAGATACA	alt_3331_RC	6	13	13	13	5	10	6	14	6	9
GGTTGTTTTATTACAG	alt_3331_RC	14	25	25	14	19	20	12	16	15	17
AGTTTAGAGTCGTTAT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
ATGAAAGCTTGCGGTA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TCATGCCAAGTACTTG	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CCCACGGACTATCTTT	alt_3331_RC	68	45	77	73	38	45	51	57	29	67
GCTGCAGGTACGCAAG	alt_3331_RC	73	63	102	78	66	66	84	64	84	53
TTGGAACAGCTTTACG	alt_3331_RC	91	72	114	85	74	93	76	83	85	98
CTCTAGTGTTAACTCC	alt_3331_RC	51	72	69	71	72	58	56	74	54	55
CAGCACATGCTAATGT	alt_3331_RC	11	6	16	3	7	6	8	11	8	10
CCGCATTTCTATATTT	alt_3331_RC	126	147	156	133	148	112	125	116	139	137
GTGGTACCGGGCTTGA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TCCAGGTGTCTCGCCT	ref_3331_RC	2	5	3	4	1	1	1	3	2	0
TGTCTTCACATCGGTT	alt_3331_RC	19	15	23	15	22	22	18	16	15	13
GTTCAGTGCGCCCCTT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TGGGACAGTTGTTAGT	alt_3331_RC	46	37	55	54	38	48	43	45	39	49
AATTTTAAGGGGCCCT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TTTAGAGTCCTTAGCT	alt_3331_RC	71	39	78	62	58	80	64	54	73	53
AACCCGCAGCGACCAA	alt_3331_RC	33	24	43	21	30	17	38	28	25	25
AGAGATTGTTACCGTA	alt_3331_RC	45	45	56	54	44	56	52	62	28	54
GCCCACGGCCCAGTCA	alt_3331_RC	0	0	0	0	0	0	0	0	0	1
TTAAAAGACTTGTTCG	alt_3331_RC	95	81	102	87	66	59	65	90	74	51
TCTCTAGCTGGGATAG	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TCCCTAGGAATGAGCG	alt_3331_RC	24	40	23	26	39	27	47	22	51	32
GTAGAGGCTTATTATA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TAATGTACAGGCTTCC	alt_3331_RC	32	30	39	18	25	51	29	20	39	38
CTGATAGTCCTGATGC	alt_3331_RC	52	39	83	75	60	54	31	47	36	27
GTTTGACCGTCTGGCG	alt_3331_RC	5	4	4	7	5	6	3	6	2	6
TTAGTGTCTGACGAGC	alt_3331_RC	125	124	170	156	98	139	106	135	117	127
CTCACGTTGCCTAGCT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TGCCCGGCTGTAATGA	alt_3331_RC	49	40	75	67	47	59	43	56	38	51
CGACTTGGGACGGTTA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CGTGTTATGTACCATT	alt_3331_RC	15	29	45	32	26	29	34	31	28	33
TCATGCAGAACTGTAT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TCACTCCGGATTGTCA	alt_3331_RC	6	17	7	2	12	5	15	7	23	6
TCATGTAAGTTCCTCT	alt_3331_RC	16	16	25	18	10	8	18	17	12	18
CCTGAGTATTGGCAGC	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TCCCAATGGTTTTCTC	alt_3331_RC	19	26	23	10	24	18	35	18	28	14
CAGCTACTCGCCTTAT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
ATGCTGAGGGACGAAA	alt_3331_RC	17	9	22	19	10	24	15	19	11	12
AAACACGGCGCTCTGC	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CACGCTAATGACGAAT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TTGTTGATCGTCACGT	alt_3331_RC	123	83	161	140	87	156	112	135	83	134
GTGACAGGTTTAGTTG	alt_3331_RC	3	0	5	2	3	2	2	2	5	1
GCCTATTACTATCCTG	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
GAGATAAGTGACACAT	alt_3331_RC	8	9	18	28	11	19	13	18	18	15
CAATAAGTTCTTCTTG	alt_3331_RC	73	55	75	66	48	60	55	60	57	57
GTAAAGTATCTTAGGA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
TGACGCTTATGCCCGT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
ACCACGTATATTAGCT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CAATTCGATCTTTCCG	alt_3331_RC	86	68	97	92	69	88	78	84	74	88
TGTCGAGAATGGAGCC	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CCTGCTTTCGCCCGGC	alt_3331_RC	24	13	30	31	18	24	20	15	23	16
TTATCCAATAGAATAC	alt_3331_RC	33	19	37	17	11	37	24	14	15	19
GAGCATAGTTAGCTTT	alt_3331_RC	3	3	9	6	1	6	5	1	0	3
ACTGTCTTCATGATAA	alt_3331_RC	20	16	24	18	22	20	17	22	14	17
TGCGCTCTATTCTACT	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
GTGCACTCAGCGTTTA	alt_3331_RC	30	14	35	26	28	20	13	23	13	25
TGTTTCTGTGCCTTAG	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
AGGTAGTAACTCTATG	alt_3331_RC	68	52	50	61	29	58	37	46	30	52
GACCACGGCCCAGTCA	ref_3331_RC	661	646	728	700	743	579	665	648	701	573
TTATTGGACTCCGCCG	alt_3331_RC	24	16	20	20	20	15	16	18	12	19
ATCTATTGCTACTGTC	alt_3331_RC	119	64	122	95	78	82	94	135	76	78
TTTTAACCTGATTGAG	alt_3331_RC	19	22	29	32	24	20	36	17	19	22
GGGCAACTACAGGTAG	alt_3331_RC	150	98	187	164	146	143	131	153	144	165
CCTTGTTCGATTGCCC	alt_3331_RC	11	10	8	10	13	9	16	10	12	8
CCTTCATAATTTTCAA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CTTTACATAGATAGAC	alt_3331_RC	8	17	5	11	11	8	9	10	9	5
TTTCTTTCCCCAGTAA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
AATGCGGCCTGTGAGA	alt_3331_RC	0	0	0	0	0	0	0	0	0	0
CTCGCAATGAGGTTAT	alt_3331_RC	155	134	229	179	158	170	109	165	113	141
ATGATTTAGTCCCGGA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AAGGGTTATCGGACAG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCCTATGGTTAA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GTATTGTTCAGCTGAC	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AACTCTACAAAGTCGT	alt_5199_RC	37	26	48	46	30	40	33	36	20	31
GTACTTTTGCCGCCAA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TCGGCCTTCTTGTTTA	alt_5199_RC	53	39	64	64	41	60	45	69	32	57
GGACACGACGGCATTT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GCACGTTGCTCAATAC	alt_5199_RC	44	36	67	70	46	54	52	56	53	60
TTTCTTAGTATGCGTT	alt_5199_RC	16	19	24	35	20	21	22	32	23	25
CCTTTGTCGTAAACAT	alt_5199_RC	29	18	23	17	19	23	15	23	16	28
TTACCTATCCGCTTTC	alt_5199_RC	51	41	64	54	34	53	34	49	36	40
TTTGTCAGCATCCTTT	alt_5199_RC	1	3	6	3	0	6	8	2	0	5
CCGGTTTCAACTTCCC	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CGTTACATAACCTACC	alt_5199_RC	42	34	28	27	32	30	28	31	45	30
TCCATTCGCTTTCGCT	alt_5199_RC	11	9	11	11	9	6	20	12	7	5
TTTTGCCACATATTCC	alt_5199_RC	1	0	3	2	1	2	2	0	1	1
AGGAAGACACAAGCAG	alt_5199_RC	14	18	20	14	9	6	8	16	10	7
AGTCTATGTCATGGTT	alt_5199_RC	28	16	35	22	23	27	25	28	16	22
AGCCGTTATCCACAAT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TGTCGTTGAAGACCTT	alt_5199_RC	79	63	106	91	83	76	74	107	59	74
AAAGTGCGTGGCGGCA	alt_5199_RC	45	45	72	52	44	52	39	43	41	42
AGCTTCATTATTTCTT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CCGGTTGTGCAAAATG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
ACCTCTCAGTCGAGTT	ref_5199_RC	66	49	82	82	56	55	60	61	48	56
GCTGGAAACAACTCGG	alt_5199_RC	50	32	53	57	31	49	31	55	47	41
AACTGGCTTTTCACCT	alt_5199_RC	38	26	48	45	21	40	36	35	32	38
GGGTAATGATCAAGCG	alt_5199_RC	124	98	150	123	70	109	122	116	95	88
CGGCGCTGAAAAACTG	alt_5199_RC	16	10	17	23	12	18	14	35	12	18
ACTTTCGGAGCGAAAC	alt_5199_RC	173	109	197	174	97	138	105	147	120	143
GTTAGCACCGGCTGCC	alt_5199_RC	69	39	94	57	47	67	37	64	37	60
CGTCCCGAATAGTGTG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CTCTGTGATTCACGCG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CTTTAGTCTCCAATGC	alt_5199_RC	73	64	88	73	83	67	66	49	60	48
GATCTCACCTGACTTT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TTATGCATTGCGTGCG	alt_5199_RC	34	22	36	27	18	27	31	30	22	23
AGGCGGACGTTGTGGC	alt_5199_RC	86	108	149	112	124	98	111	98	131	86
GTCGTAAATCTATCGC	alt_5199_RC	37	31	64	58	24	52	33	51	28	51
GAAGGGACATGAGGGC	alt_5199_RC	34	16	43	28	21	30	20	31	29	26
TTGATGGGTATTGCAA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TTGTTAAGGTGCTGAT	alt_5199_RC	9	12	12	9	9	10	9	11	7	3
CGCCCTGCAGTTGTGT	alt_5199_RC	37	27	38	37	24	31	40	33	27	21
TTTCCTGGTGTCGCTC	alt_5199_RC	16	13	12	11	6	11	11	15	9	15
ATATAGTGAACTGGTC	alt_5199_RC	137	113	129	146	95	125	91	116	120	113
TTCGGCGGAGTGAGGC	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CTCTAAGATCAACCTT	alt_5199_RC	4	0	4	3	3	3	0	6	8	3
AGGTTCATTGGGTTTG	alt_5199_RC	64	58	75	84	61	58	53	52	57	63
GTTGGCGCATCAGCCG	alt_5199_RC	20	16	25	30	13	22	21	18	23	23
ATTTCACTATGGTCGT	alt_5199_RC	88	51	94	80	61	76	64	70	55	64
TGGCTATTTTTTGCGC	alt_5199_RC	227	161	229	182	172	156	194	202	172	185
TTCCTAGATACTTAAA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GTTTATAGATCCAGCC	alt_5199_RC	10	12	24	19	11	19	13	18	14	16
CCATCAAGCTCTTCAA	alt_5199_RC	18	14	15	21	17	14	13	15	12	11
AATTCTTATGCAGACA	alt_5199_RC	43	26	40	42	45	41	37	27	34	33
ATTTCTTGCCCGCATT	alt_5199_RC	103	81	125	107	88	117	79	95	86	94
CTGTGGCTTTGTAATT	alt_5199_RC	19	17	23	13	10	30	14	13	9	18
TAAATCTCTGCTCATT	alt_5199_RC	122	101	152	119	87	152	97	120	104	89
GCATTCACCGGAACTA	alt_5199_RC	77	58	98	88	56	55	57	60	55	58
GCTAACCGTCCAATAC	alt_5199_RC	5	7	17	14	7	9	4	8	8	10
ACGGCTGCATAGTTAT	alt_5199_RC	37	34	46	27	38	41	33	29	46	28
AACGTCGGCGCTTGCG	alt_5199_RC	30	17	43	40	17	40	22	34	26	36
TTCACGTTATCGTGTG	alt_5199_RC	397	302	484	382	311	389	317	345	271	323
GGCTCTGTCCATTCAG	alt_5199_RC	82	58	89	89	47	62	37	45	66	67
TGTCGTATTTTAATTC	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CAGGATATTACGTGAC	alt_5199_RC	27	21	48	35	23	17	25	31	15	35
GCGCTATCCATCAGAG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
ACTATCCTTGATCCAG	alt_5199_RC	173	123	183	164	111	126	133	158	131	129
TACAGTTCTCGCCTCT	alt_5199_RC	102	75	99	87	84	96	94	117	84	86
TATAAGATTTGTGTCT	alt_5199_RC	14	11	13	16	9	9	13	19	19	12
CTGTTGTGAACCAGAC	alt_5199_RC	100	82	139	132	84	134	101	96	116	92
ATATTCCGCTTCAAAT	alt_5199_RC	14	11	24	13	12	12	14	18	21	10
TCATGAAAATATTCTT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AGAAGAAATTATGTTG	alt_5199_RC	86	60	78	75	41	70	58	65	50	69
TTAAATTCGTCTTGGT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GCAGATACTGCATTTC	alt_5199_RC	51	35	54	47	30	41	30	30	29	37
TTCACTCACTGGTAAA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TTGTTGTGTATGTGAA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AGAACTTGACCGCTTA	ref_5199_RC	86	68	125	108	56	102	52	77	53	81
GCTCAGGCGGTGTTTT	ref_5199_RC	418	266	516	440	305	396	296	404	315	375
TTTTGCGTAGTAGTCC	alt_5199_RC	261	193	311	221	172	232	228	242	221	215
ATTTCGGGCTTGGCAT	alt_5199_RC	38	31	54	42	33	54	26	37	33	36
TTAGGTAGCGCTCATG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CCAGTGATCAATCGTA	alt_5199_RC	38	47	55	39	63	36	44	54	65	30
ACGTCACACAGTGAAC	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GGATGTCTGTAGAAGC	alt_5199_RC	16	19	16	20	17	27	34	18	34	16
TGTGTTATTTGCGGAT	alt_5199_RC	71	41	85	77	53	59	60	69	71	63
CTTACCTGATTGAGCG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TATGGTTTCCTTGCAG	alt_5199_RC	61	65	73	88	53	74	58	54	60	64
TTTTATAAATGCGTTT	alt_5199_RC	47	38	57	43	17	45	40	27	37	36
GGTTTGTCCACATCAG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GACTTTTGTACACTAT	alt_5199_RC	21	22	18	22	17	20	8	13	15	15
GCTGCCTGGGCACAGG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TGGGTTGGGACATTGG	alt_5199_RC	75	61	91	84	57	50	68	40	66	56
ATTTATCATCAGCTTG	alt_5199_RC	29	16	20	25	15	13	22	14	14	18
ATATTTGTTATCGAGC	alt_5199_RC	13	3	13	7	9	12	9	10	5	9
ATCCTACCTGGACAGT	alt_5199_RC	22	22	17	17	26	21	23	17	26	12
ACGGTCTTTCACTCTT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
TCATAAAGGTTACAAC	alt_5199_RC	1	7	12	5	10	7	8	5	5	8
ATGTTTTTTTGGTATT	alt_5199_RC	0	0	1	0	0	0	0	0	0	0
TTAACGTCTTCGATCG	alt_5199_RC	34	15	27	16	28	18	17	10	16	21
ATTTTCGGAAAACCGC	alt_5199_RC	20	11	20	17	21	19	17	17	15	19
TGGATCCCGGCGACGC	alt_5199_RC	21	3	19	15	21	11	11	10	19	17
AACATTTGAGCTGAGC	alt_5199_RC	68	46	59	75	48	64	62	53	49	59
CACTTGTACCTCTGGA	alt_5199_RC	3	1	3	0	2	3	1	1	0	2
ATACGCACAGGCCCGG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CCCCATTTTGCAAATC	alt_5199_RC	58	53	110	85	53	59	61	67	59	59
GCTCAAATATCAACAG	alt_5199_RC	55	55	62	58	68	52	52	71	67	62
TTTTCTCCTTAGGCTA	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AAGCCAATCCCACCTT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GTTTGTGACACCGCGG	alt_5199_RC	101	75	114	90	68	82	67	101	74	96
ATGTCACGGGGAACGA	alt_5199_RC	18	5	26	15	10	25	16	18	16	15
GAATGCGTCGCGAGCT	alt_5199_RC	30	35	39	40	48	32	39	38	32	37
GCAGCTGCGTCGATAG	alt_5199_RC	38	32	50	40	37	23	30	32	34	25
TTTTTTAATCGTACGG	alt_5199_RC	31	36	25	26	26	27	27	13	26	27
TCGCGAGCACACGCGC	alt_5199_RC	29	29	34	27	23	15	33	26	32	24
TCTCACTGAAAGCCTC	alt_5199_RC	15	4	13	21	16	9	13	15	12	9
TCCCTGCTCAAATGTA	alt_5199_RC	25	22	33	26	30	31	30	19	15	24
TTTCACCAATATAGCA	alt_5199_RC	3	5	8	12	5	12	5	9	7	7
GGGTGCACCCGATATG	alt_5199_RC	59	44	76	50	31	53	41	51	49	56
GTCATGAAACTTGTCT	alt_5199_RC	35	26	38	28	28	28	27	31	23	33
GGATACTATATCTTTT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AGGAACATCATCGGGT	alt_5199_RC	100	72	129	104	104	94	77	102	74	105
TGATATATCGTTAAGG	alt_5199_RC	32	29	25	34	24	21	13	29	26	29
TCCTCCTCCCGGTTTA	alt_5199_RC	31	11	33	22	10	20	14	22	15	20
TGTTGCATGCCTTTCG	alt_5199_RC	40	25	49	39	18	50	50	33	41	39
TCGCCCTTATTAAAGT	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AGACCGTATCCCGTGC	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
AAAATCCGGTACGTAT	alt_5199_RC	3	2	7	8	6	3	3	3	1	3
ATGATCTTGGCTTGTT	alt_5199_RC	101	70	110	114	83	91	78	109	88	93
TTCTTTTTTTTCGACG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
CGTACTCCTCACCTAT	alt_5199_RC	51	44	72	44	56	39	63	53	83	26
TTTGGATTCACCGTAT	alt_5199_RC	0	1	3	0	0	0	0	3	0	0
ATCCATGTTCATAAGA	alt_5199_RC	4	2	2	3	0	2	3	6	3	2
TGTTTTGCGGCGCAAC	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GTAAAACGCGGATGGG	alt_5199_RC	0	0	0	0	0	0	0	0	0	0
GTTTGCTAAACGTGTC	alt_5199_RC	20	4	22	21	14	24	5	20	13	18
CCTGTAAACGTAATTA	alt_5199_RC	14	34	26	18	42	17	39	11	49	20
TCAGCCCCCTGTGAGA	ref_5758_new	4	19	10	5	16	5	18	5	19	0
CCTGTGGCTCATTCTT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
GGCAGTTCGACGGACG	ref_5758_new	37	84	43	41	77	34	81	33	94	39
CGCTCAGCTCTACCGG	ref_5758_new	40	105	58	58	131	46	125	48	117	38
ATCTGCGAGATTCGCT	ref_5758_new	56	120	74	49	88	61	122	45	90	65
CCTCAAGTCGTATTTA	ref_5758_new	85	197	102	86	272	87	208	81	204	68
GGTACTCCTCCGCGAT	ref_5758_new	4	10	4	3	15	5	24	1	11	2
GGCATCTTTTGGGCGG	ref_5758_new	9	11	13	4	14	5	17	4	9	9
CTCTGGTTATTCCGTA	ref_5758_new	7	10	7	5	11	6	10	5	9	3
ACTTAAAATCGCATCT	ref_5758_new	341	561	411	344	604	358	615	298	673	300
TGACTTTGTCTTGCCT	ref_5758_new	4	15	7	7	13	7	9	7	19	9
TACGGCTAAATGCGTG	ref_5758_new	0	0	0	0	0	0	0	0	0	0
GTGGATTGCTCAGACC	ref_5758_new	26	46	29	40	58	32	59	32	54	17
GCTCTCATCCCTGCTA	ref_5758_new	31	84	62	40	72	38	88	42	79	48
TGGTGATTGGCCCTGT	ref_5758_new	74	157	107	62	136	84	156	70	160	66
TGCCACCGCTTCCGTA	ref_5758_new	25	52	29	33	47	18	73	25	54	19
GTTAGTATGCATCGTC	ref_5758_new	23	52	53	36	45	38	64	19	45	32
AAGTATTAACTGACGG	ref_5758_new	0	0	0	0	0	0	0	0	0	0
AATCGATTGACGCATA	ref_5758_new	57	85	53	41	85	41	90	42	91	43
GACATTAAAGCCCGAA	ref_5758_new	0	0	0	0	0	0	0	0	0	0
CCTCTATTCCCGTTGT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TCCTGACAGTATACTA	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TCACGGATTTTAATTG	ref_5758_new	17	38	20	26	37	21	49	16	37	24
CGTTCGCTGCTACCGA	ref_5758_new	9	24	11	16	23	12	22	10	32	8
GACCCTTACCTTTAAG	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TGGCCCTTCGGAACTG	ref_5758_new	15	36	15	17	14	17	26	9	23	12
GGCTTAAGTCTGTATT	ref_5758_new	6	7	1	4	4	2	7	5	4	5
ACGGATAAGTCTCTCC	ref_5758_new	52	73	39	41	56	35	74	32	81	34
GAGGCCCAGATGCTGT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TTTTATCTTTGTCCCG	ref_5758_new	6	11	8	7	10	5	11	10	15	9
TTACGCGCGAGCCTGC	ref_5758_new	34	47	35	30	51	29	43	15	62	16
TCACCTGGTCCACATG	ref_5758_new	107	280	123	83	240	89	315	81	286	107
GCCAAACCTTATACTT	ref_5758_new	25	75	23	29	59	20	62	20	69	21
AGGTATTTGACACACT	ref_5758_new	23	60	47	29	45	24	49	16	49	20
CGTCCACTTTTAATTT	ref_5758_new	14	37	26	14	32	23	33	18	29	11
ATGCCACACGGTAATT	ref_5758_new	15	22	27	21	43	22	40	16	32	8
TTGACTATATAACGTA	ref_5758_new	17	36	23	12	21	10	36	18	40	11
CTAGTAGTTCACCTCA	ref_5758_new	1	7	1	2	5	3	13	2	9	1
TGTAGTCAGGCCTGTG	ref_5758_new	13	21	19	12	28	10	34	14	29	12
GAGAAAGGAGCTGTCT	ref_5758_new	38	58	45	43	70	31	62	36	68	27
ACAGGATGGTTACGTC	ref_5758_new	29	25	27	17	35	20	32	12	26	21
ACTGCAGGCCGGCAGT	ref_5758_new	0	0	1	0	0	0	0	1	0	1
GCTCTATAGCAACGCC	ref_5758_new	0	0	0	0	0	0	0	0	0	0
ATAACGAATTTGACGG	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TCAAACATACCCGACT	ref_5758_new	33	45	34	26	78	39	77	26	90	30
GCGACGCAGATGCTGA	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TTTCTAGTGTTTCTTT	ref_5758_new	13	50	26	11	28	12	37	12	36	19
TATACAAGTTTTGCTA	ref_5758_new	24	37	34	34	36	26	42	26	50	23
TCATCGCCTACCTTAC	ref_5758_new	7	34	11	5	29	9	31	9	29	2
CATGGTTAGTGATGGT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TCAACTTCGCTGGCCT	ref_5758_new	73	154	118	71	135	89	153	74	159	50
TTCTACGTCCCGGAGC	ref_5758_new	0	0	0	0	0	0	0	0	0	0
GGGGGGGGTTTGCGAG	ref_5758_new	18	29	23	12	23	18	25	9	30	23
GGTTCTATAATGGAAT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
GTTACCTGAGCGGGGT	ref_5758_new	4	12	8	11	6	4	9	5	10	2
CCATCTAAACGCAGTA	ref_5758_new	1	4	4	6	7	0	5	1	3	0
GTGGGAGTCTATAATT	ref_5758_new	36	40	22	27	46	25	38	26	62	17
ATTAGTCTACCGCGGA	ref_5758_new	0	0	0	0	0	0	0	0	0	0
GGGATTCAGGGGCCCA	ref_5758_new	50	88	49	47	97	33	87	47	115	40
TATTATTGGGAGAGGG	ref_5758_new	20	29	18	16	36	22	39	34	44	18
CTGTCCATTGTACTGT	ref_5758_new	3	9	8	3	8	3	6	3	16	3
GCATCCCCAAATTCGA	ref_5758_new	4	15	10	6	38	6	19	7	26	13
GTTCGTATTCCTTCGT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
GCGCAAGGGTGAGCTG	ref_5758_new	2	5	5	1	6	2	3	1	11	1
CGCTATTCGTTCATCG	ref_5758_new	33	45	33	16	28	25	49	17	40	24
ACCTGTCTAGAACAGT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
TGTATTGCGTACTTCA	ref_5758_new	14	20	16	12	22	6	42	10	27	15
ATCATGGCTCGCTGCC	ref_5758_new	0	0	0	0	0	0	0	0	0	0
AATTCACTGTCCGAAG	ref_5758_new	5	7	15	5	14	4	13	5	15	4
TCGGCTCGCTTTTCTT	ref_5758_new	7	31	18	11	20	14	42	12	42	3
GCTCGTGCTTCTGTCT	ref_5758_new	0	0	0	0	0	0	0	0	0	0
CCGGGCAACCGATCAC	ref_5758_new	0	0	0	0	0	0	0	0	0	0
CGTAACCAACAAACCT	ref_5758_new	6	4	12	6	9	3	8	3	14	2
TGGACTCTGGCTGGTG	alt_2558_reverse	243	193	307	252	172	229	213	213	221	223
ACTCGGCTGCTGGCGG	alt_2558_reverse	7	5	12	9	9	9	15	10	16	6
TTGTGAACTGGGGGTG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAGAGTGTTTGTA	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGCAAAGACTTGT	alt_2558_reverse	75	66	86	72	67	78	53	57	67	51
GGCGGGGGATACCCGC	alt_2558_reverse	144	102	154	144	119	125	111	144	122	121
TTTACTCCCGAGTGTT	alt_2558_reverse	27	29	30	30	24	28	34	18	25	15
ATCGCATGTTAACCGC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CTATAACGTTCGAGAA	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GACGTCTGTAGTCTCG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCCGTTAATCGTT	alt_2558_reverse	38	25	54	66	46	50	54	35	33	52
TCATTATGTTGTCCGT	alt_2558_reverse	41	31	36	35	27	28	33	25	28	21
GCCTTTCCGCTGAAGC	alt_2558_reverse	57	61	80	60	40	49	66	55	44	70
GACGAACAACTCGTTT	alt_2558_reverse	101	87	133	103	79	101	109	105	89	98
GTTTTCCTTCACTAGC	alt_2558_reverse	6	10	6	13	5	10	5	2	6	5
CATTCCTGTTTCCGGT	alt_2558_reverse	11	5	17	6	9	6	11	5	7	10
TAACTCCTACTATGGA	alt_2558_reverse	46	41	64	46	33	43	52	27	43	34
GAGTCATCTCCTTCCA	alt_2558_reverse	58	13	47	39	13	50	17	42	26	47
TATAGCCGGTTAGTAT	alt_2558_reverse	94	89	115	84	108	86	102	106	102	71
GACCCTAGATACGCAT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTGTTCTAAGTA	alt_2558_reverse	25	23	31	14	21	24	26	35	28	13
TACATGCTTCGCCCCC	alt_2558_reverse	81	59	101	103	59	89	62	84	68	79
TTCCCAACCTCTGTGG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCTTTGGCGATTG	alt_2558_reverse	7	7	12	8	4	9	9	5	14	11
TGGATACTCGTTGGAA	alt_2558_reverse	64	58	88	72	56	61	50	77	55	60
TTGTTGATCGAGTACC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GATAGTAAGAGCGTCC	alt_2558_reverse	28	15	35	29	22	19	23	26	30	20
GGCCCGTGATGATGGG	alt_2558_reverse	91	57	85	95	61	72	52	104	86	86
TTTTTAATGGTCTTTC	alt_2558_reverse	45	22	67	63	48	35	43	56	47	42
GGGCACTGATTAATGG	alt_2558_reverse	39	28	42	44	30	36	35	51	17	29
GTTTGGAACTTAGGCT	alt_2558_reverse	34	35	26	37	27	33	39	33	16	23
GTCTATCCTGGCCCAT	alt_2558_reverse	47	38	48	31	43	45	48	47	41	59
CGACAGCGTATCATGG	alt_2558_reverse	98	61	83	99	65	84	54	84	49	88
TTGGCATGCATCATGC	alt_2558_reverse	44	33	39	31	34	37	32	27	34	35
GGGATACAGTTCTGTT	alt_2558_reverse	9	9	12	8	4	11	10	11	18	8
TTCATTCCGCTATGAG	alt_2558_reverse	1	4	6	2	0	1	1	0	1	1
TCGTTACCGGATAATC	alt_2558_reverse	32	22	51	46	24	36	47	36	31	34
GGTTTGTGCACACGTG	alt_2558_reverse	48	46	57	44	36	42	47	33	51	35
TACGTGGCTAGAGCTG	alt_2558_reverse	1	0	10	7	3	4	2	1	4	2
CCGAAGACATGAAGTT	alt_2558_reverse	127	101	150	119	103	112	119	104	132	112
GTTCTCCCTGCCGGGA	alt_2558_reverse	15	16	13	8	5	6	12	9	7	5
CCGTGTTCGTTCCAGC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCCGGGAAAGTTC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCCTAGGCCCTCC	alt_2558_reverse	4	3	5	7	5	3	7	6	13	9
TTGCGACTCCATATAG	alt_2558_reverse	86	60	120	78	80	78	82	72	91	78
GCCTAACTCTATTTAG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GCGGACGCAAGGTAGG	alt_2558_reverse	89	42	86	77	51	79	70	84	46	77
CTGTCATCATTCCAGT	alt_2558_reverse	38	47	44	49	59	44	39	55	48	41
GCTCTGCTAAAGCTGT	alt_2558_reverse	20	14	12	18	13	23	26	14	14	12
TGTTTTGTTATGCGAC	alt_2558_reverse	48	47	63	63	41	76	39	66	44	51
TTTTTGTTTACTCTGA	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
AAATCGACTAGGACTT	alt_2558_reverse	193	128	218	189	140	170	137	171	135	196
GCCAGCTTGGTCCGGT	alt_2558_reverse	8	19	14	12	20	13	32	13	20	17
CGTTGCGAGTGGTGTT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CGTACCAGATTCCAAT	alt_2558_reverse	15	16	24	26	25	17	14	21	29	11
TTCTCGTCTTCTCGGG	alt_2558_reverse	37	43	54	40	42	42	43	46	33	35
CGATTGATTTTCATGG	alt_2558_reverse	17	17	44	28	26	36	23	24	22	40
CTGGGGTGGGCTCATC	alt_2558_reverse	28	36	42	40	21	27	37	28	33	34
TTACATCCCCACCACT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CATCAGCAGTCAACTC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCCCTCTGAATTG	alt_2558_reverse	78	75	100	73	91	90	76	84	90	56
TCGCTCAGGACGTCAG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TGATCGCAGAATTATG	alt_2558_reverse	12	20	7	15	11	16	6	16	16	13
ACACAGGATGTCCGTT	alt_2558_reverse	55	40	53	52	56	54	51	53	36	38
AGGCGATCCTATGCAA	alt_2558_reverse	83	62	106	74	53	75	64	87	70	53
AATCGTGTCACTTCGA	alt_2558_reverse	28	31	32	32	28	30	28	14	33	28
TTTTTTGCGGGCCCGT	alt_2558_reverse	5	4	10	6	10	8	11	7	12	4
CGACTGTCATACGGAA	alt_2558_reverse	0	2	1	0	0	2	0	0	0	0
AGAACTTCTAGTTGGA	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GCAAACTTGAGCCCGT	alt_2558_reverse	0	1	0	0	0	0	1	0	0	0
TCTCATAACTGATCGT	alt_2558_reverse	92	63	86	78	70	98	57	75	65	68
GCTCGAAAGCTGGTAT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TGGGATGTTTCGAGAG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GAAAACAGACATACGT	alt_2558_reverse	16	15	16	13	11	12	20	11	14	20
TTATACGTAGTTGGTT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGTCTCCCACGAC	alt_2558_reverse	7	11	6	3	7	2	12	5	12	2
GCGCACATCGTGTCCT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TCATAAGTCTTACAGA	alt_2558_reverse	72	67	73	95	77	64	94	90	89	71
CTTGCTGGCCAATGCG	alt_2558_reverse	16	13	13	17	9	6	2	3	4	16
CTGCTTAGCTTAACGT	alt_2558_reverse	2	2	6	5	6	4	0	3	2	4
TATCTGGTGAATTCAC	alt_2558_reverse	159	138	182	157	128	159	131	173	154	154
GCATTATGCTCCTTAC	alt_2558_reverse	4	1	2	2	4	2	3	1	1	1
TATATTGGTGGCAAAA	alt_2558_reverse	33	21	34	25	19	30	32	35	25	32
TGTGTTTTTTAATCGT	alt_2558_reverse	13	3	12	10	8	6	4	8	4	3
TGTTGTCGTTCCAGCT	alt_2558_reverse	122	84	171	154	92	110	90	130	92	108
CATGCTTCCGGTCATA	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GTATTGAAGACTTAGC	alt_2558_reverse	67	64	72	66	75	67	58	69	71	63
CTTTTGGATATTCTAC	alt_2558_reverse	8	3	9	7	2	5	4	4	5	5
AATCAAGCCACGTCTG	alt_2558_reverse	114	77	164	131	114	143	120	118	128	105
TGGTTAGCTCTCATTA	alt_2558_reverse	22	21	18	16	10	14	8	22	22	10
GGGATCATGATCTACA	alt_2558_reverse	8	7	14	11	10	11	7	9	8	5
TCCCTAAGGTTTGGGA	alt_2558_reverse	22	20	33	18	21	14	28	22	24	18
GATTTTTATCGTCTCT	alt_2558_reverse	10	9	17	15	10	16	16	17	15	12
TCTTCACGGGTCACTT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TAACACTAAGAGTTCA	alt_2558_reverse	48	38	79	55	36	54	48	51	37	56
TTTTTGAGACCCCTTT	alt_2558_reverse	131	136	167	146	86	138	143	152	120	141
AGTTGTTGGTCTGCTA	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
AACTCCTAGCTATGCG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CGTATCAGCGTATGTT	alt_2558_reverse	18	26	24	23	17	18	26	26	7	30
CCGGGGTCCCGGGGTG	alt_2558_reverse	21	17	27	18	28	29	26	26	21	26
CCCCGTCGCCCACTTC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGGGCGCTTAAAG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTCACTCTATTGT	alt_2558_reverse	3	2	1	5	2	3	2	1	3	2
GAGATCAATATTCTTG	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAAAAACAGCCCG	alt_2558_reverse	49	56	65	76	54	56	47	60	66	47
CCTTCTAACCGCAGGG	alt_2558_reverse	12	7	12	10	1	5	4	6	7	4
CCGGCATTGGTTTCTG	alt_2558_reverse	2	3	1	0	7	2	6	3	10	2
TATTGACCTTTGTGTG	alt_2558_reverse	46	44	60	54	59	46	49	54	49	48
GTTTTGATCTCCTTGT	alt_2558_reverse	79	65	77	68	50	62	49	63	52	63
TATCCATGATGGCAAG	alt_2558_reverse	16	19	23	19	12	16	8	27	26	18
TCAACAGTAAGATCCA	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGACATACTCGTT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CCGTAGTCATCTCTTC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GGACGAATTTCACTAT	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
CTCACTCCCATCACTT	alt_2558_reverse	4	16	11	9	20	12	20	3	12	5
CCCGCCGTTGTTTTGC	alt_2558_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGCATTTGATTG	alt_2558_reverse	9	13	20	12	15	10	10	22	13	13
CCAATCGCAGGGTCAC	ref_5752_new	35	10	47	42	18	32	27	30	20	28
TCTGTGCGGTGGGCTA	ref_5752_new	17	10	24	13	5	20	14	11	11	13
GACCTTTCGGGTATAT	ref_5752_new	182	98	216	187	134	180	130	173	146	152
TAGTCTCGGGACGGTA	ref_5752_new	15	7	29	22	8	18	5	18	15	8
CGTTATGTTATTTTGT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
ATTGGGTTACCGCTCG	ref_5752_new	104	75	140	111	73	109	76	112	77	111
TAATTGGTATTTCTTC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TCTACCGTTTCTTGGA	alt_5752_new	133	87	131	131	82	118	90	104	90	102
GTCCGATTGCCTTCTT	ref_5752_new	90	37	89	106	39	74	40	68	59	78
TGCTCGCTACAACTCA	ref_5752_new	80	53	109	98	68	93	75	103	70	93
CTACGCGACCAAGCGA	alt_5752_new	23	16	28	39	25	27	23	32	20	26
CTCAAACATCGCCACC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
CTACCTCGTTTAGACA	ref_5752_new	29	29	71	43	38	33	25	45	35	38
CCTGGATTTATTCGGT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GGCTATCCCGTGTCTA	ref_5752_new	27	20	30	21	26	30	25	25	25	24
CCTTCGTAACGGATCG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
AGCTGTCCTTTATCTG	ref_5752_new	40	31	38	44	26	36	25	46	36	36
TTAATGCTCTGGTCTT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GCCTCTGTTGCAGCTA	ref_5752_new	22	12	28	38	16	31	15	22	9	21
GGTTCTTACCATCGAG	alt_5752_new	40	27	59	47	44	37	35	46	39	33
AAATCTAAGACTACAT	ref_5752_new	232	124	325	286	142	251	174	229	175	235
GTGTTACTAATTGTTC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TACTCTTTAGCACAGG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
AAAGTGTTAGACTACT	ref_5752_new	69	47	59	78	41	80	70	53	54	74
ATTGGGTAGCTCTTCC	ref_5752_new	86	69	113	96	50	77	48	102	64	99
TCGTATCTACTCACAC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CCTACGCCAGCATTCC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GCTAGCCCCTATGGTT	ref_5752_new	36	29	36	34	22	37	30	31	23	40
GGATGCTAGTCCGTCG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TGTACGACGTCTCCTC	ref_5752_new	14	24	19	22	20	22	15	23	11	16
TGGCCGCCTTGCGATA	ref_5752_new	138	101	149	134	88	128	108	115	96	95
TCAAGTTTGAGGTCAC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
AAGATTATCACTCATA	alt_5752_new	26	9	24	14	6	19	8	15	7	11
GCTCAAAGTAGTAATA	ref_5752_new	33	20	47	44	16	23	21	28	29	27
TCACCATAGATGGTTT	ref_5752_new	49	30	50	58	26	39	16	39	28	41
TCCGAGTTTCACAAGC	ref_5752_new	14	7	16	10	11	10	14	5	5	11
TCAGTTGTCTAGCGGA	ref_5752_new	67	39	69	64	26	57	42	53	47	50
TGCTCTGTGCGCATGT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GCTACCTCATTTCCAG	ref_5752_new	84	61	114	104	59	114	60	99	80	73
TCTCACGCGGCCTATC	ref_5752_new	5	8	13	9	4	3	4	12	3	7
CGTGGCAGTCTTATCG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GATTCCGGGGAGTATA	ref_5752_new	172	105	232	199	77	162	84	181	98	167
GGTATCGAACTTAACA	ref_5752_new	0	0	0	0	0	0	0	0	0	0
AGTGCATTGGCACCCC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TTTTGTTGCTTAAGCT	ref_5752_new	47	35	50	56	20	50	35	37	38	40
TGCGTTGGCAATTGCT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TGTGGCCATTACTTAT	ref_5752_new	38	32	76	37	28	51	18	33	29	34
GATTTTATTGTCCTTA	ref_5752_new	57	41	73	70	36	53	41	50	26	56
ATCGATGTCCACGATT	ref_5752_new	63	48	82	54	47	68	44	93	54	52
CCTGGTGCTAGGATGT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TACGGACTGAGTACGC	ref_5752_new	77	60	54	91	52	66	61	60	51	63
CCTAAAGGATTGTAGG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GGTCGTTGTGGCACGT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
ATCTTTAGGAGCCCTA	ref_5752_new	46	31	53	41	13	43	18	35	18	38
GACACATCGATCTCTG	ref_5752_new	86	45	100	83	55	74	49	89	66	67
ATGTCCGTTTCTGATG	ref_5752_new	97	77	90	103	71	84	54	96	70	82
TATGTTGCGTCTAGTC	ref_5752_new	17	6	18	12	15	11	10	15	11	20
TATCTGTCAGGAATCT	ref_5752_new	55	32	96	70	35	47	39	72	41	64
TTCACTGCGACGATGT	ref_5752_new	11	13	10	7	10	13	22	15	19	15
GATGGTTCTATGTCTA	ref_5752_new	2	1	1	2	0	1	1	1	1	1
GCTATTCATCATTGCT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GGACTCAGACGTTAGG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GGAGAAAGAATGCACC	ref_5752_new	89	47	86	82	47	61	50	78	57	71
TTGCTGTTAGATAAGG	ref_5752_new	71	35	82	64	40	36	22	72	43	57
GGCCCGTCCATCTTTC	ref_5752_new	26	23	36	32	18	21	19	24	17	26
CAAGCATGGTGAATGC	ref_5752_new	1	2	1	0	2	1	3	1	3	1
GGTTCTAGAAAGGCTC	ref_5752_new	19	13	24	19	9	19	19	16	8	14
CATTTTACGTTCCCGG	ref_5752_new	42	29	54	47	32	42	33	52	34	46
TTGTTAACGGTGCATG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TCATTTCGTACGTTGA	ref_5752_new	0	0	0	0	0	0	0	0	0	0
CTCGTCACCGTCAGGA	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GTCACGTTACAGGCCG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TAGGAACCGACCCTTC	ref_5752_new	121	54	156	106	70	140	56	108	82	127
GCTGGGTTTAAAGTAT	ref_5752_new	100	65	113	109	60	100	67	93	82	97
GGACACGAGACGCGGA	ref_5752_new	10	3	7	10	4	11	9	6	2	5
TATTGTCTCCTACCAA	ref_5752_new	34	11	36	24	14	27	19	24	20	28
CTGCGCTCGCTTTCGG	ref_5752_new	110	62	152	156	92	104	71	101	85	118
TGCGGTGATGTTCTCC	alt_5752_new	118	89	144	147	54	92	83	89	81	95
AACCAACTACTGATTT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
AAGACCTCGCCCTGTT	ref_5752_new	58	47	72	56	38	64	44	76	55	64
TCCTGCCTTATACTGT	ref_5752_new	6	6	11	12	13	6	8	9	12	10
AAATCCTAATTGGGTT	ref_5752_new	75	51	97	84	40	64	47	71	36	77
CCGGGTACCGATATTG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TTGTATCACGTTTTTA	ref_5752_new	81	44	77	59	38	61	56	55	48	63
GGGTACATAATGGCTG	alt_5752_new	714	340	895	696	401	690	399	636	421	588
ATGTCATATTTGCTGG	ref_5752_new	420	217	426	412	239	386	217	374	233	359
TCTTGGGCGGCTAGTC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
CAAGCATTCCCACGGG	ref_5752_new	15	9	37	36	24	27	19	23	14	34
ATCTTCGTGCCTTATT	ref_5752_new	6	9	12	11	7	5	11	12	7	5
CCGTCTTCTAACGACA	ref_5752_new	175	131	235	181	137	126	133	162	129	167
AGATTTCGCAGAGGCC	ref_5752_new	61	36	54	63	24	52	37	56	37	41
CGGATCCTCCAAAATA	ref_5752_new	14	13	30	19	19	16	12	17	10	19
CATGATGTCATTTGAC	ref_5752_new	60	39	74	77	27	54	38	68	49	73
TTTTCATCCCGGATCT	ref_5752_new	21	6	28	18	9	23	13	14	13	20
GTACCTATTAAGCTTA	ref_5752_new	76	42	61	67	53	59	46	48	25	56
CTTTTAACGAGAAGGC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TTAACCGAAACCAGAC	ref_5752_new	168	112	202	177	113	160	106	154	131	185
TTTTGACATCAGGGTA	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TTCACTCCGGGCGTCA	ref_5752_new	21	27	19	14	26	19	39	16	46	11
TTATGTGAACTATGGA	ref_5752_new	4	1	4	8	3	2	1	7	6	8
TCTATCAGCCCTCCCT	ref_5752_new	41	27	62	61	41	42	44	52	42	42
TTAATAAGTAATGGAC	ref_5752_new	22	14	48	36	18	23	23	24	18	39
TAGTTCTCTATGGCAC	ref_5752_new	34	19	44	36	24	30	25	40	30	39
GCTCGCTTCAATGAGC	ref_5752_new	85	43	88	91	70	104	51	90	68	85
ATATTGCTTAACATTA	ref_5752_new	3	1	2	3	3	1	3	3	3	4
GTGGTCACGCCATACA	ref_5752_new	53	28	71	48	28	39	24	52	25	56
ATATACAGGGCGGCGA	ref_5752_new	50	20	55	50	25	41	34	37	32	31
TGCTTAAGACACATTC	ref_5752_new	12	19	11	11	8	23	17	16	16	12
TTAACCAAGTATACAA	ref_5752_new	0	0	2	0	0	2	0	1	1	1
CGCAAGGGGCTATCTA	ref_5752_new	13	3	3	13	5	5	9	5	7	12
GATATTTGCACGCTTA	ref_5752_new	24	7	12	19	9	9	10	13	5	17
TATCATATTTAACTTG	ref_5752_new	89	50	132	89	55	70	37	71	42	65
CGGTGAAACTGCCTGG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
ATATGTTAGAAGGATT	ref_5752_new	14	3	9	4	2	1	5	8	0	8
CGCCCATGCACTCAGT	ref_5752_new	93	48	117	97	38	84	52	63	51	82
CGATGAAATTCCTATC	alt_5752_new	61	73	74	68	81	57	66	73	46	64
GCGCACCCACGGCATA	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GGCCTAGCCAGGTAGA	ref_5752_new	30	26	48	36	26	34	23	33	28	35
TGTCGCAGGCCCATGC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
CCTACCAGACGCACTG	ref_5752_new	37	36	53	62	45	52	36	37	58	28
CATCTCATGCTATTCC	ref_5752_new	219	155	234	221	146	214	125	217	124	241
TGTGCTTCTTGTTGGA	ref_5752_new	20	14	22	20	14	15	15	24	15	19
TTGGATACTGTTCAGC	ref_5752_new	51	36	85	64	46	42	56	57	35	54
GCATTTTCCCATCGCA	ref_5752_new	78	44	108	57	55	68	39	77	47	80
TTGTTGTTGGCTCAAT	ref_5752_new	76	42	81	87	41	81	38	46	55	59
GACATGGTTAGCCACC	ref_5752_new	64	40	64	83	61	82	37	74	39	64
CATGTGTTGTTGAAGG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
AATTGCGTGCACTCCC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TTCAGTCCTACACTAC	ref_5752_new	11	5	15	19	14	11	11	19	13	16
CGTGTTGACCCCTTGG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TTTTCCTATTGCGGAG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
CACACCGGCTCGGCGC	ref_5752_new	65	39	72	44	48	52	44	33	45	34
ACGGGATAGCTCATCC	ref_5752_new	75	67	87	73	47	104	46	89	62	81
CGACCGGGCGCCATTA	ref_5752_new	51	21	73	49	32	50	24	45	25	65
GCTCATAACTCTTTGT	ref_5752_new	75	38	75	58	42	45	27	47	39	46
GGACGTCAGATGCCCG	ref_5752_new	59	27	67	62	38	59	42	45	26	63
CGCTTTGACTTATGTC	ref_5752_new	0	0	0	0	1	1	0	0	0	0
TTAATTTTCAGTAGCT	ref_5752_new	71	75	101	98	45	60	54	69	49	70
GACGGGCAGCTGTGTC	ref_5752_new	54	31	56	45	23	52	36	44	42	36
TACCGGAGTCACATTA	ref_5752_new	0	0	0	0	0	0	0	0	0	0
GACGCACATTCGTAGA	ref_5752_new	105	51	98	93	59	67	46	70	59	79
CCTTGTCGACACTGGT	ref_5752_new	2	1	11	9	1	3	0	6	4	8
ACTCCTCATTACTGCC	ref_5752_new	0	0	0	0	0	0	0	0	0	0
TCGGATAGACCTCGAA	ref_5752_new	21	8	21	14	9	21	5	7	5	14
TTTTTCTCGCTTTGGG	ref_5752_new	0	0	0	0	0	0	0	0	0	0
AACACGTTCATAATTC	alt_5752_new	93	41	122	68	47	89	52	65	46	69
CTCTTTTGTAACCCAT	ref_5752_new	0	0	0	0	0	0	0	0	0	0
CATCCTGGGTAAGGTC	ref_5805_new	0	0	0	0	0	0	0	0	0	0
GCCGTGATGTCCGTCC	ref_5805_new	0	0	0	0	0	0	0	0	0	0
GCTTGTGCGCTTTTCT	ref_5805_new	56	71	81	69	96	74	102	78	87	62
CCTTAGCTGAAACTCT	ref_5805_new	0	0	0	0	0	0	0	0	0	0
TGTCGTCTCGGCTAAT	ref_5805_new	21	14	16	9	9	16	16	15	18	13
CAGGCTACATTCGCTG	ref_5805_new	90	107	93	101	93	79	104	66	109	78
CCCAAGTTCGTGATTC	ref_5805_new	0	0	0	0	0	0	0	0	0	0
CTTATCCATTCAAAGG	ref_5805_new	0	0	0	0	0	0	0	0	0	0
TTGACGACCCACGAGC	ref_5805_new	0	0	0	0	0	0	0	0	0	0
GGTAATTTCAGGAAGG	ref_5805_new	9	20	21	9	19	13	10	13	19	22
TGACTCTGTCACGGCC	ref_5805_new	43	45	56	41	63	53	52	59	54	38
GTACGACTAGGAGCGT	ref_5805_new	0	0	0	0	0	0	0	0	0	0
GTAGATTCGGGTACTA	ref_5805_new	0	0	0	0	0	0	0	0	0	0
AAGTCACGCTTTATCC	ref_5805_new	25	15	25	20	28	18	31	14	22	18
ATGTTAACGACTTTGG	ref_5805_new	11	20	28	26	30	19	19	21	24	20
GTACAGTGGGCCCATA	ref_5805_new	57	55	72	78	72	65	58	46	48	42
CATCATAGGTAGCAAC	ref_5805_new	5	3	0	4	4	4	4	0	1	3
ATATGTTAACTTGGTT	ref_5805_new	45	57	63	57	53	36	73	42	75	38
TGTCTCCTCCGCAGTA	ref_5805_new	49	51	45	38	59	49	60	37	58	52
GCTTTTTGGGTTAAAT	ref_5805_new	14	4	9	6	10	11	6	6	10	5
TTGACCACAACCATGG	ref_5805_new	64	75	92	51	94	72	60	53	85	45
GTGCCAGAACACGTCA	ref_5805_new	8	14	12	10	10	6	14	8	9	7
GCGTTTCTATGCGGGA	ref_5805_new	20	42	33	25	22	14	22	19	35	17
TGTCTTCTTTGTTCGT	ref_5805_new	155	139	160	139	141	162	143	130	145	139
GATGGAGTGAGGCGCA	ref_5805_new	41	55	59	43	42	43	55	39	39	46
CATGAGACACTATTCA	ref_5805_new	18	25	35	14	19	24	29	16	29	20
CCGGTTCTCGCCAGTC	ref_5805_new	7	5	13	16	7	10	6	10	3	10
CTTCCAATTATAGGGA	alt_5992_new	23	9	20	14	19	16	13	22	10	26
TCACTTCGTGCTTGCT	alt_5992_new	216	57	211	113	67	170	68	154	63	188
AGGTACTACCCCTCTC	alt_5992_new	35	24	61	34	34	41	20	54	24	39
TCTCTATGGTTTGTCT	alt_5992_new	1424	424	1483	900	466	1179	434	1128	460	1216
CCCGTTCTGGAGTGGT	alt_5992_new	0	0	0	0	0	0	0	0	0	0
TGCTGGGTTTACGTCT	alt_5992_new	116	42	135	72	46	100	29	108	42	100
GAGGTATTTGGTCTCC	alt_5992_new	91	18	75	35	20	50	27	60	20	52
GTGACCACTTATTTAT	alt_5992_new	221	53	212	148	71	167	73	152	69	209
TGTGGATTTTACTAGC	alt_5992_new	125	38	172	106	39	107	44	105	46	111
TACTTAGTTCGATCTT	alt_5992_new	0	0	0	0	0	0	0	0	0	0
GGTGTGATTGCCGCAG	alt_5992_new	109	32	114	72	21	99	41	87	34	75
ACTGCTTGTGGTATCT	alt_5992_new	198	77	240	134	56	193	58	181	66	208
CTCCGCGAAGGAATTC	alt_5992_new	0	0	0	0	0	0	0	0	0	0
CAAGGTAGGTAGCTTT	alt_5992_new	38	13	50	38	20	35	16	36	27	50
AAATTCTTCACAGAGT	alt_5992_new	0	0	0	0	0	0	0	0	0	0
GGGTCATGAACGGAGC	alt_5992_new	0	0	0	0	0	0	0	0	0	0
AGTGCAAGCAATAATG	alt_5992_new	198	107	217	139	103	166	115	158	98	173
AAGCAACAACCCCGTA	alt_5992_new	78	21	108	41	30	81	32	83	27	75
GTTTTAAGCATTTACT	alt_5992_new	229	81	252	131	70	227	77	190	82	207
TGCGTGTTGTGTCCTG	alt_5992_new	56	15	83	36	22	46	25	50	14	57
CTTCGGTAATCCTCTG	alt_5992_new	0	0	0	0	0	0	0	0	0	0
CTTTTGCTTGGCTTTA	alt_5992_new	28	10	24	15	7	15	8	21	10	19
TTTTAAGGCTAGAAGT	alt_5992_new	427	160	500	283	188	415	175	326	171	365
TTGTGGCCTCAGCATG	alt_5992_new	579	163	602	411	189	438	190	413	189	475
CACTCGCTCTTATCTC	alt_5992_new	38	10	43	31	16	40	15	34	19	28
ACTCGCCGTTGGTCTT	alt_5992_new	5	21	2	7	24	5	28	4	35	5
GTACCCATTCCGTATG	alt_5992_new	648	203	656	428	173	546	204	461	198	498
TCATCTCATTCACATC	alt_5992_new	147	52	131	90	41	134	42	94	39	141
GATGATCCCTTGTTCT	alt_5992_new	168	59	177	115	64	157	43	127	43	149
TTTTGCATGTATGCGC	alt_5992_new	130	47	161	93	36	128	37	128	46	136
CAAGGCAATTGATATT	alt_5992_new	84	36	114	88	45	104	36	92	33	94
CCTTGGTTGTAAGGTT	alt_5992_new	198	95	188	130	76	159	69	168	78	148
GCCGATCACAGTCATA	alt_5992_new	194	54	216	144	45	186	86	157	54	174
TGGATTCGGTTTTAAC	alt_5992_new	281	94	362	180	97	248	68	258	90	234
ATACGGAATCTCGCTC	alt_5992_new	414	115	455	296	138	304	101	384	112	321
GGTCCGGGGGTGCTTT	alt_5992_new	251	76	254	174	62	207	61	202	86	190
GCCTACTGCCTAGAGC	alt_5992_new	44	13	47	35	15	39	16	39	16	23
CGGAAGTTGGGATGAC	alt_5992_new	207	57	234	130	61	171	67	178	58	189
CACCTAGGAGTAATAA	alt_5992_new	0	0	0	0	0	0	0	0	0	0
GAAGGTGCAGTACGCG	alt_5992_new	236	81	262	163	70	187	88	204	85	220
CCTCCGTATATGCCCA	alt_5992_new	133	56	145	114	62	118	49	122	66	115
AATGTCGGTTCAGCGA	alt_5992_new	92	33	97	56	15	89	25	68	24	71
ATCATTAGGTTTCTTC	alt_5992_new	254	66	243	159	61	203	80	194	74	200
TTTGGTCGACATAAAG	alt_5992_new	35	34	31	33	16	20	21	23	33	18
TTCCTCATCTGATCCT	alt_5992_new	90	40	131	76	36	106	45	90	50	115
CTAGTTGTTCCCGTAA	alt_5992_new	0	0	0	0	0	0	0	0	0	0
AGTCATTGCTATTTAA	alt_5992_new	320	80	311	218	74	230	88	229	97	263
TTCTACCTTTGTCGGT	alt_5992_new	196	74	214	124	74	137	64	167	69	147
ATTACCAAGCCACAGC	alt_5992_new	320	125	350	234	130	303	140	298	120	286
TGATTTCTTTCTTGAC	alt_5992_new	83	31	85	54	32	54	22	58	30	57
GATTCATCCTTGCACC	alt_5992_new	76	29	85	43	30	78	22	50	23	69
TATGTTTTGCATTCCT	alt_5992_new	0	0	0	0	0	0	0	0	0	0
GTGCCGCGTGCTTCTG	alt_5992_new	0	0	0	0	0	0	0	0	0	0
GATAACGTGGCTGGCT	alt_5992_new	11	3	29	8	5	10	1	16	2	22
AATCGGTGCGAAATAA	alt_5992_new	110	57	103	88	64	107	61	85	53	88
ATTGTAGCCTATTTAC	alt_5992_new	0	0	0	0	0	0	0	0	0	0
GATTTAATAACTCACG	alt_5992_new	36	16	46	36	11	41	16	40	12	35
AGCATCCCTTTGAAAG	alt_5992_new	130	32	111	77	54	90	46	70	39	101
CTAGACTTTTGCCAGG	alt_5992_new	103	36	108	53	43	84	30	66	47	89
GTTTGCGCAATATGAC	alt_5992_new	395	133	407	276	133	342	138	295	147	326
GCGTCCCCAATGCGTA	alt_5992_new	233	79	246	180	104	192	92	201	107	184
TTGCTGCATAAGTATG	alt_5992_new	142	73	167	105	81	123	100	143	125	130
CAAATGCAACCTGTGC	alt_5992_new	50	19	65	66	22	62	19	52	25	36
CCGTTGCTTGCATGCG	alt_5992_new	450	151	483	316	190	392	172	367	189	349
TTGACACGTAATATCT	alt_5992_new	26	5	21	10	28	40	17	21	29	20
CGTTTGGGCTAGCAGG	alt_5992_new	174	60	196	116	91	179	69	153	78	153
GCAGTCCACCGGCCCC	alt_5992_new	0	0	0	0	0	0	0	0	0	0
TAGTCCCCGTGCCGAA	alt_5992_new	244	60	280	158	64	177	95	190	76	188
TGGGAGTGTAGGCGCG	alt_5992_new	0	0	0	0	0	0	0	0	0	0
GTGGGCCTCGTAATGG	alt_5992_new	0	0	0	0	0	0	0	0	0	0
CCGGGTTTCTTGATTC	alt_5992_new	54	66	46	35	66	40	61	33	88	57
TCGTGGAATTATCGCC	alt_5992_new	220	55	199	137	53	154	44	149	79	186
TATGTCTTTATGAATG	alt_5992_new	117	37	102	62	32	88	32	75	34	97
GTGCAGCTGTTTCATC	alt_5992_new	93	31	139	75	27	112	34	79	34	86
CGCATTGGAAAATTCT	alt_5992_new	0	0	0	0	0	0	0	0	0	0
ATTGTTTTAATCAGAT	ref_5019_reverse	126	150	141	132	117	127	125	100	144	108
GCAATACCCGGGTGGC	ref_5019_reverse	53	57	67	56	41	56	41	53	57	47
AGTGAAACGGCCCTTG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGAGGATACAAGG	ref_5019_reverse	11	16	14	12	15	16	9	14	26	9
ATTTTGTATCTCATGG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCTAGGTCTATA	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TTGTACCGTCTGCACA	ref_5019_reverse	18	18	17	10	12	11	8	10	19	12
GTATGTTGTGCGCCTT	ref_5019_reverse	12	21	20	6	11	23	11	11	8	16
TGCTGCTTAATCATCT	ref_5019_reverse	23	27	19	21	20	12	21	15	13	8
GAGCATCGCCCGCCTC	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TTTCATATATGCCATA	ref_5019_reverse	10	7	9	15	7	10	11	12	15	9
GTCGATGCGGTATTGA	ref_5019_reverse	114	96	97	91	106	87	110	65	105	81
AATTCCGTCGGATATC	ref_5019_reverse	16	24	30	19	29	15	26	16	30	22
GACGGGACGATACGTG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
ATACGAGAGTCCAACT	ref_5019_reverse	70	69	76	76	80	52	71	57	64	63
ACTGTGCATATCGCGA	ref_5019_reverse	266	300	366	278	336	275	336	271	358	253
AAACCGCGATTAGCCA	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGGGGAATCAGGA	ref_5019_reverse	64	53	53	54	51	61	53	52	42	32
GCGCATCGCCCGCCTC	ref_5019_reverse	9	10	20	6	12	6	6	12	15	5
AAAATGCGAGGATGCG	ref_5019_reverse	20	25	18	32	26	18	16	14	23	18
AACCGCACCCTGGCGG	ref_5019_reverse	29	24	41	29	22	29	25	21	32	21
TTTTTGGTAGTTCCTG	alt_5019_reverse	80	84	96	69	96	63	104	66	85	78
CTGTCGGGAATGCTCC	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAGTTGTCAAAGC	ref_5019_reverse	11	11	13	9	14	8	11	11	15	10
TTCAAACGCGGGGTTT	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCTCACGAGTTAG	ref_5019_reverse	34	46	57	58	43	47	48	43	42	42
CTCTGAGCCGCTGCTA	ref_5019_reverse	15	13	20	17	31	16	13	15	10	16
TTATAAGTGGAGAATC	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
AAAGGCGTAACCGGTG	ref_5019_reverse	10	8	9	9	9	6	13	9	9	6
GTATACTATCATCCCA	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCTCGCTGAGTGA	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TTCATCATTCCTTGCG	ref_5019_reverse	16	12	23	22	12	15	12	10	25	7
CTTGTTCTTCACAGGC	ref_5019_reverse	2	3	4	5	9	5	10	3	4	3
GCACTTTCTGTGATAA	ref_5019_reverse	93	85	115	80	85	85	93	92	91	71
GTTGTAGGGAAGTTAG	ref_5019_reverse	24	31	41	31	22	18	34	18	28	32
CATGGTTGTCCCTCAG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCTGGGAACTATA	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TTAAATATATGAATAG	ref_5019_reverse	14	13	21	13	5	13	19	7	18	8
CCCCGGTATTCCTGGT	ref_5019_reverse	24	30	36	23	29	27	35	20	40	23
TCCTAGAGCAGCCTAC	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCCTGTGGCAAGT	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
CAATCCTTGGACTAGC	ref_5019_reverse	77	102	81	60	117	70	103	75	109	74
TCTAGCTCTCCATAAG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCTGTATAGAATT	ref_5019_reverse	5	4	5	3	2	5	8	5	6	0
AATTTCCGCCTCATAG	ref_5019_reverse	106	85	144	127	119	113	121	118	102	100
AAAGTTTACGTTTCCG	ref_5019_reverse	27	27	34	24	27	21	27	18	29	20
TAGCCGAGTTGGTTAG	ref_5019_reverse	5	13	7	6	10	5	6	12	9	6
TCAGGGGCTAATTTGT	ref_5019_reverse	93	113	92	111	98	84	97	89	100	77
ACAGGTTTTAGAATAG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGCAGCTTAAATC	ref_5019_reverse	4	17	7	3	8	4	13	4	15	4
CTGCGGTTTCGCTATC	ref_5019_reverse	103	121	117	104	111	116	108	89	96	82
GGTCTTGTAGGACTTG	ref_5019_reverse	12	14	15	18	13	18	19	8	21	14
GCTCTTTTGAAGGAAC	ref_5019_reverse	21	24	12	26	15	13	15	15	14	16
TACTCCAAAGCTGCAG	ref_5019_reverse	1	4	4	1	3	1	5	3	2	1
ACATCGACGTAACCTT	ref_5019_reverse	0	2	2	0	3	0	1	1	1	1
GATTCTCACTTAAGAG	ref_5019_reverse	53	34	38	40	44	38	41	30	42	37
GCGGTGTCTATTCGTT	ref_5019_reverse	74	68	89	66	71	71	57	71	84	77
AAACATAGAAGCGCCT	ref_5019_reverse	6	10	20	17	12	14	11	12	8	18
CTAGAGTTGGGTATTT	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGATTTAAGAGAG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTATAGGGCGTAC	ref_5019_reverse	124	122	168	144	111	115	117	118	132	106
TAAAGTCACAGTCATA	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCAGTAGTTATCA	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTGTCAGTGGTC	ref_5019_reverse	9	10	13	7	19	7	12	13	11	8
ATCCTCATGCCCATCT	ref_5019_reverse	18	13	21	20	16	18	18	5	16	9
CCGACCTAAGAGTTTG	alt_5019_reverse	4	20	7	7	15	5	23	4	17	1
CAGTCGGGTGCCCGTA	ref_5019_reverse	26	23	28	25	18	32	24	29	28	22
GGCTGGTTTGTTTTGT	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
GCACCAATGCTTGGAG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCGATAGTCTGCATTA	ref_5019_reverse	16	16	17	15	18	13	21	16	16	18
TGTTGATAACTGTCAA	ref_5019_reverse	25	37	28	24	20	25	30	26	35	23
GTGTCATGAAACTGAG	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
GAATTTTCCTCGGGTT	alt_5019_reverse	70	57	91	61	72	76	56	50	74	52
TCGTGATGAACTCCTT	ref_5019_reverse	6	3	11	5	12	6	9	6	1	10
TGCGTTTCACGTTCCA	ref_5019_reverse	28	30	25	27	35	36	25	21	41	26
TAGCACCGCGGGCTTG	ref_5019_reverse	7	13	13	6	12	7	10	5	12	9
TACCAGTGGCGCAACG	ref_5019_reverse	40	39	43	42	40	34	58	39	47	43
GAGAGCTTAGAGGATG	ref_5019_reverse	44	45	37	39	33	39	53	41	79	32
GCGACTTTAGTGCGGT	ref_5019_reverse	8	8	7	4	11	8	14	7	7	5
AATTTTCGGAGTCCTC	ref_5019_reverse	13	18	17	16	15	17	24	15	15	12
ACGCCGATGAGGGTTC	ref_5019_reverse	20	19	29	31	32	21	32	26	26	24
TGGTAAAGTCTCGCGA	ref_5019_reverse	113	90	133	114	61	114	102	106	102	134
GCTACTGCCGATCGTT	ref_5019_reverse	46	39	48	36	62	35	43	41	57	25
ATTTCGGTGCTTCGGT	ref_5019_reverse	100	121	115	91	123	93	115	99	99	68
TACAAGAATGGCTTTT	ref_5019_reverse	0	0	0	0	0	0	0	0	0	0
TATTATGGGCCTGTCC	ref_5019_reverse	62	43	63	50	78	54	55	50	84	50
GGCACAGTGGCCATTT	ref_5019_reverse	4	6	5	5	2	9	6	10	8	5
GAGTCCGTGCTACCGA	ref_5019_reverse	16	19	21	19	21	14	14	15	21	15
GAATGTGTAATGGCTT	ref_904_upstream	194	13	208	170	21	160	14	170	26	157
TGTGCCAGTTCCGTGT	ref_904_upstream	171	18	190	174	22	162	18	144	14	144
AGCTTGTTGGGTATCT	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
CAGAGTCTGTAACGCC	ref_904_upstream	976	129	1257	1040	115	931	132	1017	157	875
GAGGGATGTATTGATG	ref_904_upstream	165	13	203	158	23	186	19	176	26	148
TTCGCATAATTTTTTT	ref_904_upstream	282	32	387	355	28	286	22	280	28	254
TTTTGTTTGGCTCGGC	ref_904_upstream	65	9	112	77	10	90	8	77	8	92
GCGTTCGATTGTAGTG	ref_904_upstream	430	52	523	412	52	427	50	437	46	328
CCAAGTGCAGTGCAGG	ref_904_upstream	545	77	681	620	77	544	72	517	78	493
ACCTCTAGCTTTCTCG	ref_904_upstream	1920	184	2208	2011	201	1750	208	1794	215	1689
GTTCTCCGAATTGTTA	alt_904_upstream	120	44	143	125	51	106	72	92	51	96
AGTCGCAAGAGCCCTA	ref_904_upstream	1092	80	1330	1154	124	1094	128	1064	123	999
GGGCTAGTATTGCATG	ref_904_upstream	964	105	1059	1001	92	954	101	916	100	788
TTACCGCACTGAGTTG	alt_904_upstream	898	129	1162	989	94	951	119	938	106	850
ATGGTTTCGTAATTGT	ref_904_upstream	423	44	523	450	43	363	47	397	50	364
ACAGATGGGGTCCTTG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTCGCGGCCTACT	ref_904_upstream	894	79	1105	941	89	907	114	918	87	791
CTAAGTCGAGAGTGGT	ref_904_upstream	1820	222	2247	1944	235	1914	268	1783	231	1772
CCATCTAGCTCATTGA	ref_904_upstream	2322	266	2755	2284	258	2171	288	2134	274	1955
TCCCCATTTGTTGGCT	ref_904_upstream	93	12	112	88	11	83	11	95	13	95
GTACTGTCTAATCGAC	ref_904_upstream	2287	260	2603	2363	252	2046	264	2120	233	1993
ACTATGTCGGTCCTCA	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGTGCGCATGGAA	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTATAGTTATATA	ref_904_upstream	803	78	939	761	83	728	95	681	95	651
GCTAGTCATGTAGGTC	ref_904_upstream	1423	158	1721	1450	156	1396	185	1365	185	1316
TTGTTAACACCTTTCC	ref_904_upstream	872	112	1065	916	118	892	122	857	116	747
TCATATTTTCGACGCA	ref_904_upstream	1315	158	1572	1353	120	1286	159	1025	153	1082
TGCAAACTTACGATTG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCTAGTCATTTAT	ref_904_upstream	101	10	89	94	15	74	12	83	8	71
CCCTTTTCACGCCTCC	ref_904_upstream	97	11	102	108	11	106	5	106	12	89
ACTTAATACAAGGTCT	ref_904_upstream	1882	249	2446	2030	236	1921	229	1942	228	1737
ACGGCGATGGCAGGTC	ref_904_upstream	870	78	1012	840	88	864	110	753	99	760
CGCTACTGCGGGGTGG	ref_904_upstream	427	66	632	536	64	458	75	460	83	398
CTGGCAATCACTGCAT	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCTCCTCTCACCT	ref_904_upstream	667	78	788	650	84	602	109	519	108	520
TTGGATTGAATTCATG	ref_904_upstream	252	34	309	273	36	233	37	222	26	209
TCTCATGTCTCGCTTC	ref_904_upstream	81	9	82	64	15	68	8	46	11	51
ACCTTTGTGCATTTCG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGACCCGGCTTGC	ref_904_upstream	246	31	283	225	27	226	25	216	20	196
GTGTGTAAATGCATTT	alt_904_upstream	245	118	351	298	116	276	177	262	150	223
ATTGCCGCAGGTGTAC	ref_904_upstream	471	69	609	522	67	463	68	428	66	408
ACTGATTCATTCAAAC	ref_904_upstream	270	30	278	253	28	238	24	262	13	234
TTATACCTGTTTAGAA	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCTTATACAGATG	ref_904_upstream	334	46	444	318	54	333	51	359	70	311
CATGTCCGCATTCGCG	ref_904_upstream	521	65	648	473	63	510	57	501	63	466
GCCGCAGAGAACTGGG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGATTTTACGGTA	ref_904_upstream	415	53	538	476	62	398	59	405	45	344
TCTATTCTAGGCGGCG	ref_904_upstream	1560	170	1780	1520	155	1397	173	1349	183	1332
TCTATAAAGGAAGTGC	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
GACGGCTTCGTTCTTC	ref_904_upstream	393	32	459	436	45	409	41	350	42	384
CATTTTGACGCGGCAG	ref_904_upstream	186	21	224	180	31	180	23	187	15	179
GATTTACCTCTAAAAG	ref_904_upstream	429	44	566	461	53	435	42	475	46	451
TTATGTATTTTGCCCG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
CATCCTTGCATTTTCG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCTATCCGGTGTA	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
CGATAACCCGATGGTC	ref_904_upstream	730	83	797	785	87	677	70	651	62	641
GCTGCGTATATGTTCA	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TTCACAATACGTTCAG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TAACTCAAAGTATCGG	ref_904_upstream	112	16	126	131	19	104	25	95	13	84
GGGCGGGTTAGGAGCC	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TATTAAGCGTCGCTAA	ref_904_upstream	55	7	59	52	6	46	5	52	13	51
ATTTAGGCTGCCGCTT	alt_904_upstream	257	52	359	358	51	281	37	353	46	273
TATCTGTCATCCCAGG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGGCTTGCGATT	ref_904_upstream	534	43	613	522	58	533	61	512	63	451
CCATGCATTTCGCTGA	ref_904_upstream	150	14	153	133	13	140	19	130	9	111
ACTTGTAAGGAGTGTC	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGCTCCAGCACGT	ref_904_upstream	2520	334	3197	2707	314	2659	337	2483	311	2332
TGTCCCCAGGCCTCAT	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
AGGATTAGGACGTCCC	alt_904_upstream	501	231	626	515	186	497	197	516	214	442
CGGCGCTGAAAACGCC	alt_904_upstream	300	123	370	353	116	299	146	329	129	302
GAGCCACGCTGCGTCC	ref_904_upstream	565	72	756	648	60	597	96	596	63	535
AAATCAAAACATTTGC	ref_904_upstream	31	2	43	31	7	38	4	38	4	27
GCGTTGCTTTGGTCCC	ref_904_upstream	1525	162	1778	1625	130	1410	179	1430	143	1323
CTGCTTACCAAGGTTG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGTCCGATTATT	ref_904_upstream	2538	322	3120	2726	308	2459	283	2484	294	2240
GGGTTTTAAGTCCTAG	ref_904_upstream	457	52	506	494	55	473	47	407	47	408
CATTGGTGGCTCCCAT	ref_904_upstream	1012	125	1196	1033	115	969	118	1026	126	875
AGGATAGGTTATGGCC	ref_904_upstream	889	101	1037	857	98	859	113	821	91	691
TAGATTTTGCGTCGTG	alt_904_upstream	95	17	116	86	4	83	17	70	9	77
CTGTCCGTAATAGCGT	ref_904_upstream	454	60	584	532	59	482	68	467	61	389
ATGTTAGTTCCGCAAC	ref_904_upstream	224	19	219	220	19	202	19	178	16	187
TTTTAGTCGTCTTGAT	ref_904_upstream	447	45	535	468	38	435	55	419	58	398
TGGACCTATGAGGCTT	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
CTACGTACGCTCGTTA	ref_904_upstream	602	60	694	603	55	565	46	506	70	505
GCCCAGGCTCGTTTCG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGAACAGATTGTT	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGTCAGCCTTAAC	ref_904_upstream	291	40	435	314	27	312	36	310	27	293
GCGAGCGGTACCACGG	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
GCAATCAACCCTGGCG	ref_904_upstream	268	14	250	284	29	200	23	223	25	196
TGCTCGTCGTCATTTA	ref_904_upstream	56	9	80	58	7	60	5	53	9	61
TATTCCTTTTTTGACG	ref_904_upstream	704	58	722	665	88	594	65	623	96	548
GCGTCCACTCCGAGGA	ref_904_upstream	809	81	850	741	83	667	80	671	86	633
GTCGGACCAATTTTAT	alt_904_upstream	250	106	285	231	108	217	105	233	115	228
TCGTTTTGTTAGGTTG	ref_904_upstream	2895	354	3775	3102	315	2923	349	2824	362	2682
GTTCACGTCTCGCTCT	ref_904_upstream	2327	263	2994	2632	318	2237	303	2422	279	2170
CCTACTTATTGTCTTA	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGGCTTTTATCTT	ref_904_upstream	1351	186	1637	1369	150	1322	153	1275	167	1201
TCCCATGTCCAATTAC	ref_904_upstream	250	19	265	295	24	214	25	249	28	236
GCGGCTTGATAGGCCG	ref_904_upstream	911	89	1074	921	91	872	78	848	98	794
TTTTGTTACGCTGCCA	ref_904_upstream	623	71	725	632	66	593	54	588	62	537
CTCAATGTGGGTATCT	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTGGGGCTACGCT	ref_904_upstream	85	11	91	89	12	79	7	91	12	69
GGACATAGGAAAGACT	ref_904_upstream	0	0	0	0	0	0	0	0	0	0
CAATGGGCACATACAT	ref_904_upstream	30	3	16	21	4	30	6	26	3	20
GCACGCTAGATTCATT	ref_904_upstream	77	10	83	75	6	64	8	79	11	64
ACTTTCCTGCAACAAC	alt_4000_fdr	32	32	42	31	23	35	27	33	33	24
ATACCCTCGTTCGGCC	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCCAGGTACAGAA	alt_4000_fdr	13	19	14	17	17	11	22	14	11	15
ACCGTCCAGGGTTGAT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
CGTCATATTGTCTCGC	alt_4000_fdr	6	7	10	9	21	2	18	6	13	2
GATGTCTGAAAGGTCT	alt_4000_fdr	88	71	87	95	75	76	89	65	84	77
GCCGCATCCTCCGGTA	ref_4000_fdr	21	29	38	32	25	16	34	28	27	27
TGGAATAGTTGGATCA	alt_4000_fdr	27	18	27	34	24	35	43	17	32	21
GATGCATGGAACCCTA	alt_4000_fdr	47	48	54	51	51	45	52	38	49	39
TGGGGTCTTTAAATGT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTACGTTGGGATGAAT	alt_4000_fdr	24	22	27	30	24	20	23	18	20	16
CATATGAGGTACCGGA	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TATTGTGCAACCGAGT	alt_4000_fdr	20	20	22	17	21	21	28	23	14	22
TGGTTCCTGACATTGG	alt_4000_fdr	12	15	21	13	12	17	28	9	29	11
TACGGATTGTTTCACG	alt_4000_fdr	9	13	21	14	11	22	11	12	19	7
CTGGGTGGCTCAGCCA	alt_4000_fdr	235	201	280	246	196	208	191	204	239	216
AGCAAATAGAGCCTGC	alt_4000_fdr	12	20	13	14	11	10	19	20	10	5
GGCTTTTGCTTCCCCG	alt_4000_fdr	20	55	31	22	50	12	52	16	73	19
CTTTAGATCTAGGACG	alt_4000_fdr	107	105	128	111	124	104	116	115	115	110
AGGTCTCCAAGGACCC	alt_4000_fdr	29	17	40	29	28	24	33	33	38	29
TAGTACTGGGTTATTC	alt_4000_fdr	9	7	4	6	2	2	9	4	5	3
AATGCTGCTCGGCAAA	alt_4000_fdr	19	21	42	27	27	20	37	34	16	23
GACTTATCAATTTGCC	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCCCTGAACGTA	alt_4000_fdr	58	54	87	76	54	58	54	63	66	55
CTGTGGCCTTTACTGG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCACCTTAGATCC	alt_4000_fdr	25	30	29	35	26	28	35	41	38	30
ACACATCAGAGACATC	alt_4000_fdr	28	19	28	23	23	29	16	14	28	23
TGAACATCCATAAGGT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTCACACTATGTTACA	alt_4000_fdr	100	95	108	95	97	108	83	91	109	78
GTCGTCCAAGTAATGA	alt_4000_fdr	34	24	35	31	23	36	23	50	20	31
GTTATTGTAGTTCGGT	alt_4000_fdr	25	29	48	37	44	42	54	33	44	33
TCGTACAGCATCTGTT	alt_4000_fdr	22	51	37	40	46	30	48	41	36	34
TGTATTTGCTCGCCGA	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCTCACGTTTTCG	alt_4000_fdr	7	10	14	13	10	6	3	6	7	8
GGAGGGTCTTTACTTG	alt_4000_fdr	65	64	48	59	70	46	71	53	50	47
CAATTCGGATTTCTGT	alt_4000_fdr	108	99	110	93	96	62	95	85	101	96
CCTTCTACAATTTTAA	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGTCCGGCTCAGG	alt_4000_fdr	2	9	7	8	6	6	7	10	5	5
CAGGTTGGCTTGATCA	alt_4000_fdr	87	124	124	104	128	117	130	110	118	101
AGTGCCAGTTTGACCC	alt_4000_fdr	12	20	27	23	20	21	15	21	20	12
GGCTCCCGTATGTCCT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
CCTACGTAATTCTTAA	alt_4000_fdr	8	28	18	20	17	12	29	7	22	15
GCCCCACTCCGGTGGA	alt_4000_fdr	1	3	1	2	4	0	3	3	0	0
GCTCCATTCCCCTGCG	alt_4000_fdr	17	21	24	12	23	15	25	17	38	20
ATGAGATGAGAGTTCA	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAAGATGGATAAA	alt_4000_fdr	34	10	22	34	29	16	25	18	24	24
CTGCCTACTTGATCAG	alt_4000_fdr	25	20	25	15	50	16	27	18	44	14
AACCGATTAGCCACCA	alt_4000_fdr	14	15	14	18	17	19	11	15	14	10
ACCTCTGTCATCCCGA	alt_4000_fdr	89	159	137	103	165	105	169	101	167	115
CTAACCGTGTGTTTCC	alt_4000_fdr	22	26	34	33	35	37	37	23	28	24
TAGGCGGTGTGCCCGT	alt_4000_fdr	39	36	38	48	43	32	48	40	51	37
CTCTTCCGTTCTCGAG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTAACGATCTTG	alt_4000_fdr	39	48	50	43	42	36	29	63	37	49
TTCTGTTTTCACATCT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCCCAAGCCACGC	alt_4000_fdr	18	20	19	12	32	14	32	19	30	15
GATATGGTAAACCCCT	alt_4000_fdr	5	5	8	5	3	10	4	5	2	6
AATTGTTCCTGCTCTT	alt_4000_fdr	30	19	32	26	19	29	16	34	33	16
CGGCTATGTGGATACA	alt_4000_fdr	36	34	58	44	51	26	46	28	41	30
GTCCTTTTTACGCTAT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTATTGTTTCTTGCAT	alt_4000_fdr	65	66	60	69	56	56	75	46	84	51
TGCCAGTACCGTTCGG	alt_4000_fdr	31	37	32	34	41	32	36	27	47	35
CCGTGTGCTCTGAACG	alt_4000_fdr	14	7	5	13	6	6	8	6	10	5
GGCACACCATTTGTCT	alt_4000_fdr	39	47	60	55	47	53	50	45	58	36
CATCCCCGGGGGTAGT	alt_4000_fdr	33	41	19	21	29	13	55	24	42	25
TGTGTCCGTCCCGTCA	alt_4000_fdr	28	30	44	25	24	18	39	26	24	18
AGGCACTCGAGATACC	alt_4000_fdr	3	0	1	2	6	5	7	1	9	3
TGAATTACGCTATTAT	alt_4000_fdr	96	96	140	120	103	118	108	124	133	91
GTCTCCCCGGGACGGC	alt_4000_fdr	11	29	10	6	28	3	28	14	19	12
TCTGTCGAGAGAAGCG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTTTCAGTAACTT	alt_4000_fdr	18	17	15	17	10	17	9	11	17	11
ATGGCCGCTGTGTGGA	alt_4000_fdr	11	13	19	26	14	15	17	6	11	17
TCCATACGTATATTGA	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
AACCTCCTAGGTTTAC	alt_4000_fdr	6	6	14	5	7	14	14	11	16	8
TTCGATTCGTACGTTT	alt_4000_fdr	2	11	8	10	10	12	6	5	10	1
GAGTGAGGTTGGATTC	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
CAGAGCTCCAAATTTC	alt_4000_fdr	15	23	27	19	24	19	25	13	24	13
GGGCTTGACACGCTTA	alt_4000_fdr	157	133	206	185	143	142	173	138	160	141
TTCCACACTGTCGGCA	ref_4000_fdr	26	21	23	19	22	26	29	18	29	28
AAACTAGATTGACCCA	alt_4000_fdr	23	17	30	22	16	29	19	29	20	16
ATTGTGGCTACTTGAT	alt_4000_fdr	61	86	97	65	61	85	78	81	86	64
TTCCATACTCACACGT	alt_4000_fdr	43	29	40	49	48	46	34	36	37	35
GGTCTCTTAGGGTGTC	alt_4000_fdr	13	26	16	21	15	15	24	21	23	14
CGCTCCCCTTAGCGTG	alt_4000_fdr	2	10	4	1	15	1	11	2	13	0
AGGCTAGCATGGCCAT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCCATGTGTATTG	ref_4000_fdr	95	102	124	111	105	117	105	105	95	87
TGACGCATCCGCTGTA	alt_4000_fdr	13	19	16	19	21	8	12	13	24	17
ATAGCTTCTCTTTTCG	alt_4000_fdr	100	89	114	66	82	80	86	95	101	77
TTCGCTATTCGCTCGG	alt_4000_fdr	9	17	11	5	24	12	7	11	19	8
GAACGGAGCAGCCGCC	alt_4000_fdr	8	2	7	3	4	5	5	5	7	4
CCCGCTCCCAGAGCCT	alt_4000_fdr	20	14	28	23	14	13	21	7	27	18
GTGCGCGGATACTGTC	alt_4000_fdr	14	27	26	24	40	23	21	22	27	18
CTTTCTGGTCTATGTT	alt_4000_fdr	38	54	74	57	52	43	55	63	63	47
GACAGTGTTTGCAACA	alt_4000_fdr	12	13	14	19	13	10	11	7	13	8
GTTAGCCAAACAATTG	alt_4000_fdr	16	29	10	21	23	24	23	17	27	14
CTACCTGTAGGTTTGG	alt_4000_fdr	12	16	15	9	9	16	17	11	13	9
TTAGCCTATTAAAAAC	alt_4000_fdr	121	122	117	112	125	127	142	112	141	109
CTCTTTTCATCGAATC	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GAATGATCCACTAATG	alt_4000_fdr	60	39	62	48	36	50	33	49	62	35
GGACGCTCTCTTTGTG	alt_4000_fdr	181	158	178	136	155	142	144	155	168	172
CTCATTGTCTTCACAT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGATTCAAAAGT	alt_4000_fdr	6	5	4	2	3	4	1	6	2	4
GGCCCGTCTATTGAAT	alt_4000_fdr	19	38	24	33	45	19	34	25	27	28
ATTGCCGTTCGTTGAA	alt_4000_fdr	119	150	170	115	159	116	143	112	144	112
TGCTAATTACTTAGAT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTTCGTCATGGTG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
CATACCTAGCTTCGGA	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTCAGGGTTTTTA	alt_4000_fdr	19	16	23	16	21	18	28	13	18	12
GACTGCGTATTTCCCG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
AGATTTCCATAGCGCG	alt_4000_fdr	9	3	17	16	11	12	6	12	4	10
CTTCCAGACGGGTAGT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTGGAGTCTCTCA	alt_4000_fdr	21	29	18	23	26	18	25	17	14	13
CGGGCGTCTCATATAT	ref_4000_fdr	44	50	54	38	56	55	54	43	66	54
AACGGCCTTCGTCGTT	alt_4000_fdr	13	9	16	9	14	7	19	13	11	9
GGGTACCAAACTGTTG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTTTTTTTCACG	alt_4000_fdr	72	56	112	72	66	69	70	72	94	51
TCGTTGCATTCTAAGA	alt_4000_fdr	1	6	7	3	8	5	5	6	6	10
GTGCTTAACTCGGTGC	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCGGTTATCTATT	alt_4000_fdr	33	33	52	28	33	26	21	32	42	33
CGGTCACTCCAATGCA	alt_4000_fdr	21	34	21	15	39	18	21	19	26	21
TGCCTGAGGGCGGCCC	alt_4000_fdr	24	23	41	29	32	32	29	42	54	33
TCATCCGCGAAGTTTG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GAGAAAGTTCGGAATC	alt_4000_fdr	30	31	48	38	39	40	56	44	48	40
GACGTTTTGGAGTCCG	alt_4000_fdr	104	108	116	93	95	88	91	86	93	73
GTTATTGTATCAAACG	alt_4000_fdr	1	6	5	1	5	3	2	2	7	2
TTTATTGAGATAGAAG	ref_4000_fdr	44	47	62	40	42	49	53	39	56	29
CATATAAAAGATTAGC	alt_4000_fdr	78	59	80	59	58	72	72	60	57	49
TTCTGCTAGGTATCCG	alt_4000_fdr	62	55	76	68	59	58	63	49	71	35
ATATCTTTAAGTTTTT	alt_4000_fdr	20	8	18	17	21	23	14	16	22	12
CCGGTGTTGGATTTGG	alt_4000_fdr	95	75	114	96	81	86	118	89	87	81
CGTGCACCCTCTAAGC	alt_4000_fdr	27	40	45	35	28	24	34	38	34	20
ATCTACTTCGTGGGTT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTCACTATGATTAGAT	alt_4000_fdr	36	44	47	50	54	33	34	34	53	43
CCCAACGCTCTATGTA	alt_4000_fdr	24	24	26	21	33	23	26	24	24	14
TTATAAAAGTTACACC	alt_4000_fdr	84	78	80	87	86	90	81	88	85	65
ACGAAAAACTCTGCTT	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTGATCTGTCGCAAGT	alt_4000_fdr	10	11	19	12	18	20	19	10	22	23
TATACGGCTTTCCCAC	alt_4000_fdr	56	57	77	67	65	43	60	47	53	47
ATCGAGTAGTCAGTTG	alt_4000_fdr	30	31	37	25	23	26	23	17	33	25
TGATCGGTGTACTTCG	alt_4000_fdr	0	0	0	0	0	0	0	0	0	0
GCGTACTCGAATCCCA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ATAGAGCTAGTATACT	alt_3829_fdr	48	68	75	58	68	77	90	45	90	34
GCTCACAGTTTGATGA	alt_3829_fdr	12	13	9	10	10	1	10	6	14	15
GGCTTGATCTATTGAG	alt_3829_fdr	27	35	44	37	61	18	44	35	51	35
TTTTTGATGACTGAGG	alt_3829_fdr	35	63	28	33	52	38	43	30	53	31
GTAACTAATTCGTCCG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ACCTACAAGAATTAGT	alt_3829_fdr	46	74	42	56	72	55	78	40	95	51
ACCCTCGAGTGAGGTG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCCAGGAGTAAAT	alt_3829_fdr	123	219	168	138	225	160	226	123	231	141
TCTGTAGCCAGATTGG	alt_3829_fdr	2	0	3	1	0	1	1	0	1	1
AGTTAGGCGAGTGGAG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCAATGCTATGTC	alt_3829_fdr	16	19	15	19	24	27	21	6	17	15
CGTCTGCTAATTTGCT	alt_3829_fdr	17	35	31	30	34	20	27	26	39	16
GTTCATAACTGTGCCT	alt_3829_fdr	14	16	16	15	21	17	15	18	13	18
GTGCCAGAGTTCAAGT	alt_3829_fdr	34	44	58	41	52	41	50	39	54	37
CGGCACCGGGTTCACC	alt_3829_fdr	14	6	12	13	15	7	16	13	9	7
GGCCTTAACCACGTCC	alt_3829_fdr	16	16	13	15	20	17	15	23	14	13
GTTCTTGGGAAGGATA	alt_3829_fdr	97	158	125	112	136	114	136	91	157	85
CTTGCTTTAGTAAGTT	alt_3829_fdr	172	199	166	154	227	143	238	142	228	121
TGTTACTGTTAATTTC	alt_3829_fdr	5	2	5	2	5	1	4	1	4	3
TCGGTAATACTTTGGG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
GAGATAACACGGACGC	alt_3829_fdr	10	10	19	9	8	12	13	9	15	15
TCTTTTCGCAGTGTAT	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ACACATCTTACCTAAG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGGTTTCCGGAAT	alt_3829_fdr	16	9	14	8	9	9	18	12	22	9
ATGGAGTAGAGTATTT	alt_3829_fdr	31	46	46	40	29	23	48	32	51	28
AGCCTGAGACCTCAGG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTATCTTGGTGTCTGA	alt_3829_fdr	5	11	8	11	13	8	8	13	13	3
TGAGCCGGAAGTTCTT	alt_3829_fdr	43	47	46	35	36	30	55	28	44	27
ACTTGCATTATTATCG	alt_3829_fdr	70	96	103	74	94	60	120	77	135	59
CATACGTGTTAGTTTT	alt_3829_fdr	14	37	26	29	33	18	31	13	40	16
ACTCATAGTAACCGTC	alt_3829_fdr	6	12	20	9	16	14	18	9	17	14
CCGTCCTTTGCCTACC	alt_3829_fdr	0	20	1	3	14	3	24	3	19	1
CACTGAAAATACTAGC	alt_3829_fdr	43	41	65	49	62	45	47	34	46	40
TCTGGTCATGTCAGAG	alt_3829_fdr	36	43	41	36	42	29	46	29	43	23
TTCAGCATCGGCTTGC	alt_3829_fdr	4	6	2	7	5	2	6	3	2	3
GCACTCCGGCCGGATG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCCTTACGGTCTC	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGTGAAGCGGACA	alt_3829_fdr	44	31	41	35	50	44	40	33	45	26
CGTTGCGGTTCGTGCT	alt_3829_fdr	8	3	5	9	10	12	3	14	9	4
CAGGGCTAACTTGGGA	alt_3829_fdr	23	19	27	29	29	18	51	21	26	23
TCTTAAATGCGTATTT	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
AATCGTCTTCAGGTAT	alt_3829_fdr	14	15	20	13	19	12	21	6	26	13
TGCCGTGACTTCACTG	alt_3829_fdr	14	21	15	20	17	18	11	9	17	12
CTTCTTTTGGTCAGTT	alt_3829_fdr	22	54	34	35	49	37	64	18	46	36
TTATGCCACGCTCAGC	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTAGATGTATCCC	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ATTACAGGAGCCAAAG	alt_3829_fdr	7	18	16	13	22	13	21	19	22	13
TATTGGTACTGCAGTA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCCTCAGTTACGG	alt_3829_fdr	27	28	35	12	32	15	28	25	28	20
CTCAGCCAGTAACGCT	alt_3829_fdr	11	38	18	15	29	19	39	16	39	12
TTACCCTAATTGTGTA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGCAAGTTGTGTA	alt_3829_fdr	2	12	6	3	2	0	3	4	13	10
CATCGTGTCAGCGGTT	alt_3829_fdr	6	17	8	5	18	4	17	10	13	4
GATATAATCGCCCGAG	alt_3829_fdr	23	24	27	27	22	29	18	30	24	20
ATAGGGCTTTTATGGG	alt_3829_fdr	14	20	23	17	19	13	23	21	33	14
CGCAGCTTATGGACAC	alt_3829_fdr	2	5	14	4	16	8	7	4	8	4
ACTCTATGGACAGGGT	alt_3829_fdr	23	44	37	37	38	36	42	27	50	32
TTGCACCGGTACACTC	alt_3829_fdr	1	20	5	6	21	7	24	2	31	4
TTACGCTTAATGCGGC	alt_3829_fdr	3	8	7	9	7	9	6	5	11	4
CCCCTGCATTGGGTTC	alt_3829_fdr	3	11	2	4	7	3	6	1	7	3
TGCGCTTGGCTACTGT	alt_3829_fdr	18	33	26	31	38	13	38	28	35	18
CGTCCGGCATGCCAGT	alt_3829_fdr	14	26	23	15	22	20	28	23	29	23
CACGGTCATGAATTGT	alt_3829_fdr	12	25	20	14	18	13	19	11	15	5
CGAGGTACTAGCTTTG	alt_3829_fdr	67	131	94	62	94	73	86	73	122	67
TGGATCACACAAGTGT	alt_3829_fdr	46	54	54	56	56	44	50	41	64	38
AGGCTCGCCATGTGCG	alt_3829_fdr	2	3	2	1	1	1	2	1	2	1
ATCCATAGAGTCAACG	alt_3829_fdr	14	16	13	16	21	10	16	19	17	7
TGAGCATGACTTGCCA	alt_3829_fdr	45	62	54	42	81	34	57	44	80	34
CCCGGGCTCGTTGGGA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTCTCTGGTCATC	alt_3829_fdr	16	19	17	11	24	14	31	6	24	9
TGCATTCTCTGATGTT	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTCGATGTCACTCCCA	alt_3829_fdr	19	32	14	20	35	16	33	23	38	18
CAGAATGTTATTACAC	alt_3829_fdr	2	8	2	0	2	8	6	4	4	3
TTCCCCCTGGCTCGCC	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTGCTTACCCTCG	alt_3829_fdr	27	52	38	47	55	50	49	38	62	31
ACTCATCTACCGTCAG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCCCCTATTTGCT	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
TCTCACTCCTTCCACC	alt_3829_fdr	30	65	25	20	69	31	65	22	73	21
ATATGCGTTTGTTGTG	alt_3829_fdr	0	1	3	3	3	0	3	2	2	3
TGCTAGTATCTAGCCG	alt_3829_fdr	20	40	43	18	38	25	35	31	49	29
GGTTATATGTAATCCT	alt_3829_fdr	42	35	39	40	31	22	49	34	36	38
TAACGGCGCACTGCGT	alt_3829_fdr	32	49	29	33	42	33	60	35	47	31
GGTGCTTTTAGTGACT	alt_3829_fdr	6	9	6	3	7	3	10	5	7	8
TGACATTATACCGATG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ATCACGAGATCGACCT	alt_3829_fdr	3	2	2	1	0	2	1	0	2	3
TCTCTCCGGTCTCTGG	alt_3829_fdr	6	13	8	11	5	4	5	4	8	3
CATTCTCGTAGTATTA	alt_3829_fdr	41	37	43	44	69	37	47	47	56	43
TGCGGTATGTTACTAA	alt_3829_fdr	22	27	17	23	21	15	23	14	22	11
TCCTTCTTGCCCGCAA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
CAATTATGTTGGTTGT	alt_3829_fdr	60	70	59	45	79	41	78	63	61	48
CCTCCCTCAATGGAAG	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTGTATCCTCTGC	alt_3829_fdr	3	7	3	6	9	7	13	5	6	3
AAATTGAATTCACTTA	alt_3829_fdr	35	38	53	29	43	30	40	16	47	37
TCCCTCTTTGGAGTGT	alt_3829_fdr	8	12	13	10	11	11	14	7	11	8
CCAAACAGGCTCGACA	alt_3829_fdr	4	14	9	14	6	8	7	8	6	6
CGCTGACCCGAAGGCG	alt_3829_fdr	4	4	5	5	2	6	4	2	7	7
AAACGTACACCCCGAA	alt_3829_fdr	23	46	13	13	67	12	46	14	61	11
TCTCACTTCGGCAACT	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGGAATACTTTTT	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCTGAGGCGGCCC	alt_3829_fdr	152	157	224	203	199	166	196	155	172	155
GTGTGTTTTGTTTGAG	alt_3829_fdr	21	28	13	15	25	9	30	12	30	13
CGTTCCTCGGATTTAA	alt_3829_fdr	27	39	42	17	46	23	39	23	34	24
TTTTTACTGGAGGGTG	alt_3829_fdr	30	43	41	24	44	28	38	27	43	27
TAGTCTTTGGTGACTT	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
GGGATTCGCTTATCGG	alt_3829_fdr	29	44	76	48	46	39	45	34	56	35
TCTCCAGTTGGTCGCA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
ATACAATTTACCTGAT	alt_3829_fdr	25	43	24	36	48	30	43	27	41	14
GAGTATTGATGTCTCG	alt_3829_fdr	35	22	38	18	48	27	52	29	24	24
GTGCTACTCTACAACG	alt_3829_fdr	96	163	127	105	136	112	179	86	165	88
GATTGGTGCGTATGAT	alt_3829_fdr	11	17	13	13	10	12	21	10	26	4
GTCGTAGGGTGTTATA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCCAACTTGAGGT	alt_3829_fdr	18	29	19	12	31	27	38	21	36	13
TCACCTGGCAGTTCAC	alt_3829_fdr	51	116	80	84	112	74	114	67	133	59
TGTCAAGTGGTTTCTA	alt_3829_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCGTTATGCTCTG	alt_3829_fdr	25	23	24	22	31	41	23	26	36	14
GCGAGTAGACAGTTGG	ref_5787_new	30	63	54	39	54	44	58	50	67	29
ACGCTCGTGACGTGTT	ref_5787_new	0	0	0	0	0	0	0	0	0	0
GCATAGAGTATATTAA	ref_5787_new	72	131	90	78	124	88	118	72	136	62
AGGTTCGTACTGGAAT	ref_5787_new	0	0	0	0	0	0	0	0	0	0
GTGGCTTCACACCGCG	ref_5787_new	16	25	20	11	31	17	20	17	33	13
AAGCCTCTTAACGCAG	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TCAATTTTGCTGGGCG	ref_5787_new	6	10	7	9	6	3	7	9	8	3
TGGCGGTGATCTTCAA	ref_5787_new	49	45	52	45	63	41	61	32	51	41
CGCCAGTAGTTCTTCC	ref_5787_new	0	0	0	0	0	0	0	0	0	0
GCGTTTTTTGATTACA	ref_5787_new	99	136	108	100	155	110	166	94	183	89
CCGTATCTAAGAGCAG	ref_5787_new	7	11	11	9	12	6	9	5	11	4
GGTCAGACTACCCACG	ref_5787_new	13	12	11	16	11	3	13	10	15	10
GCTCCCTTATGAAAAT	ref_5787_new	23	36	24	26	64	31	39	26	35	29
AGTAAACACTTGGACG	ref_5787_new	61	60	70	61	52	50	78	49	87	40
GCTATTTGTTTGTTTC	ref_5787_new	68	82	72	71	71	55	82	58	86	63
CAATGGGTCCCCGGTT	ref_5787_new	7	22	25	10	15	6	23	9	19	12
CTCCTTCCTTGGTCTT	ref_5787_new	1	6	7	8	15	4	11	8	14	9
AGCGATCCGGTCTTTT	ref_5787_new	12	7	9	9	11	7	8	10	27	4
CTGTTTGGTAGCTTTG	ref_5787_new	18	32	23	15	31	7	34	26	31	18
AGTTGCGACCGAAACC	ref_5787_new	10	7	5	6	10	3	7	5	5	4
GGCATTATTCGGAAAA	ref_5787_new	6	9	1	9	5	6	9	4	4	11
CAGACCGTCGACTCGC	ref_5787_new	5	18	9	8	20	4	20	8	10	2
TATGGTGACGATTAAA	ref_5787_new	11	7	12	7	5	7	7	12	11	15
TCCGGGCTATCCGCTT	ref_5787_new	0	0	0	0	0	0	0	0	0	0
GACCGGACATCTCTTT	ref_5787_new	6	6	5	4	1	3	8	2	3	4
AATTTGTTTTGAGATT	ref_5787_new	34	47	49	33	55	45	54	31	57	22
ACAAGTGACCATCTAA	ref_5787_new	1	0	3	1	1	3	0	2	0	2
ACTGCGCCATGGTAGT	ref_5787_new	17	34	42	25	37	20	32	19	34	19
TCTGCGTTTCTTTCAA	ref_5787_new	26	35	22	21	19	21	29	13	33	18
TAGATGGGCCTGACAG	ref_5787_new	0	0	0	0	0	0	0	0	0	0
CTGAAACCCCATATAG	alt_5787_new	19	39	36	25	25	27	32	26	28	18
GGCTTTACAGGTACTG	ref_5787_new	30	37	20	23	46	24	27	35	38	19
ATATACTGCGGCTGTA	ref_5787_new	72	110	100	72	103	62	102	66	121	80
TGGGTACGACTGCATT	ref_5787_new	44	71	63	32	42	37	69	44	67	35
AGGCCGTGGTCTGCAG	ref_5787_new	17	11	13	9	18	8	11	9	20	10
TTCCCCGAAGAGCTCA	ref_5787_new	48	88	40	36	64	41	69	41	83	35
TCCTAGCGGTCCTAGA	ref_5787_new	0	0	0	0	0	0	0	0	0	0
ATTCCCTTAAACCCAG	ref_5787_new	14	16	15	20	23	9	10	10	14	18
ATTATGGCTCGGGGCA	ref_5787_new	0	0	0	0	0	0	0	0	0	0
GACGACACTGGGAACT	ref_5787_new	48	85	68	71	78	56	100	59	93	45
TATGTTTCCCTTGGTT	ref_5787_new	64	55	79	62	85	54	83	58	84	53
TATAACGCATGGTCAA	ref_5787_new	16	7	13	7	15	18	20	17	6	8
GTTCGTTCTTTCGCGT	ref_5787_new	27	49	45	26	49	37	38	34	46	24
CTAGGAATACGCGAGA	ref_5787_new	36	44	40	31	44	35	56	34	56	36
TTGGTATAAATGCGGG	ref_5787_new	11	16	5	16	15	10	29	12	19	8
CTATATGCATGTATAT	ref_5787_new	2	3	4	3	4	0	4	1	5	4
CACTGTAGGTGTTGTC	ref_5787_new	8	40	30	11	35	13	40	18	49	19
CGTCTTGGACTTCTTC	ref_5787_new	2	1	6	1	6	0	4	4	7	2
GCTGTCCTACTTGTCG	ref_5787_new	59	104	79	61	99	65	105	76	112	72
CCTCGTTTGTACTACG	ref_5787_new	11	16	13	5	18	8	16	8	8	5
GCTCGCGGCTCTGCAA	ref_5787_new	7	15	14	14	9	10	16	9	16	7
TCAGGAATGTCTGCCC	ref_5787_new	19	17	28	19	16	14	14	10	22	15
ATGTTCGTCATGGGTC	ref_5787_new	0	0	0	0	0	0	0	0	0	0
CACTTCGTAGCCTTGA	alt_5787_new	226	285	271	227	309	192	317	237	329	200
CTAATGCACTGCGCCT	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TGAAATGCCTCAGTGT	ref_5787_new	37	69	49	44	55	32	58	26	66	33
GGTACCTCTGTAGAGT	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TTTTATCTATACGACG	ref_5787_new	33	40	40	27	63	42	42	29	40	29
TCGCCATCACAAGCGA	ref_5787_new	47	95	78	59	113	55	81	61	96	61
CTTAGTCAAGATTTCG	ref_5787_new	6	12	8	0	9	2	3	5	6	2
GAGTCCTCCACACCCA	ref_5787_new	23	29	23	19	21	21	34	22	35	23
GTGGTCCCGGTTAAGC	ref_5787_new	0	0	0	0	0	0	0	0	0	0
GATACCTGTAGACCTT	ref_5787_new	2	2	3	2	1	1	4	4	2	3
TCTTTGATTGTTAATA	ref_5787_new	68	92	73	58	76	57	78	53	94	73
TCGGGTTTCCTTCCGG	ref_5787_new	0	0	0	0	0	0	0	0	0	0
CACTGTAAAACGTTAT	ref_5787_new	53	64	47	36	62	43	64	42	73	45
TAAAAGACGTGTTTCC	ref_5787_new	14	19	13	12	18	15	22	6	22	11
TAAGTCAGTTTGTATA	ref_5787_new	29	34	50	30	40	25	47	21	41	22
GTCTCCGGATAGATTG	ref_5787_new	25	31	27	16	35	23	36	25	37	27
ATCAGGCTGTCCCGAC	ref_5787_new	12	20	16	18	17	16	11	9	44	4
CATAGTTTCAAGTAAG	ref_5787_new	25	23	25	15	21	16	31	25	44	21
TAACTGCCTCGGGATA	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TTCTTTGACCGCTTCC	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TTTACGTTATTACGTC	ref_5787_new	32	46	44	38	72	49	47	41	51	32
GCATTCCACCTGTGCG	ref_5787_new	23	44	18	32	46	29	51	14	41	35
AACTCTGGACAGCTTA	ref_5787_new	22	56	30	36	37	35	32	46	36	31
TCGCGCGCTCCACTCC	ref_5787_new	5	5	5	4	9	4	2	2	3	2
TCCCTCATGACTATAG	ref_5787_new	13	29	30	13	20	17	24	12	34	16
TATCTGATTGCTAGAG	ref_5787_new	21	35	27	24	30	17	36	11	47	23
CTCAACCTGGATACGC	ref_5787_new	22	35	28	21	39	21	40	27	45	16
ATTTCTTATGGATGGA	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TATGGGGATCACCCTC	ref_5787_new	41	45	65	48	53	56	66	35	61	44
ATGCATCTCATTATCT	alt_5787_new	54	87	70	52	78	71	62	80	93	50
CATCCGCCAAGCGAAG	ref_5787_new	75	96	99	71	108	62	90	62	104	57
TACTACATCGGCGATC	ref_5787_new	23	38	47	34	39	19	48	24	42	31
TAATACAAACAGGTAG	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TGGGGTCACGCAGCGT	ref_5787_new	18	23	29	26	23	21	26	18	24	22
CGGCTTGGTCATAGCC	ref_5787_new	0	0	0	0	0	0	0	0	0	0
TAATGTCCCGACCTTA	ref_5787_new	0	0	0	0	0	0	0	0	0	0
GTCCGATTATTTGTGT	ref_5787_new	5	3	5	2	6	2	2	0	6	3
GTGATACTTGTGCCTT	ref_5787_new	11	27	19	15	22	15	21	14	18	21
GACCGGTAATTTATTG	alt_5787_new	96	149	134	98	161	109	177	101	163	100
GGTGTAGGGCAGGAGC	ref_5787_new	10	19	16	8	15	16	13	9	16	10
CAAAGATTGTTATTAT	ref_5787_new	3	6	3	10	4	2	11	5	7	2
CACGGCTCACTCGATA	ref_5787_new	37	44	51	42	69	34	54	45	45	42
ACCATTGTATGTCAGT	ref_5787_new	9	7	4	5	5	5	22	10	21	7
TGCTAAAGTTTTGCGA	ref_5787_new	108	102	120	101	124	77	110	86	125	95
AACCAACGTGCTGTGT	alt_5787_new	206	284	262	247	337	204	308	223	311	174
GCAAAGTCTGCCGCAC	ref_5787_new	33	58	52	38	81	42	55	28	70	31
TAGGCGCCTCGTGCTA	ref_5787_new	0	0	0	0	0	0	0	0	0	0
CTTTTAGCTCTGTGCA	ref_5787_new	8	13	3	11	21	6	11	5	10	8
GATTCGGAAATGCATA	ref_5787_new	8	13	10	12	25	14	21	12	25	14
ATGTGGCTATCCTTAC	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TTTTACGTGTTCATCC	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TTGAAAGCTCTCTTAT	alt_5892_new	23	21	47	35	30	36	29	25	34	27
CTTGTCCCCGTGGCCG	alt_5892_new	38	56	58	27	52	24	53	33	55	32
AGTTTGTATTAACTTT	alt_5892_new	27	16	26	13	24	26	19	23	25	22
GTCATTATCCGACTGT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
CAACGCTTACTAGCTT	alt_5892_new	21	29	19	27	35	16	40	15	41	14
TTCGAGGGCCCGGCCT	alt_5892_new	61	52	75	55	49	52	70	57	67	70
CATGCCGAGGCTAAGC	alt_5892_new	32	35	47	51	39	28	46	41	45	27
TTCGACGAATATTCGT	alt_5892_new	5	11	5	11	7	7	6	6	9	7
ACGGTCTGTTGGGAGT	alt_5892_new	15	19	22	21	28	11	20	22	20	16
AAGCAGGTATAAGCAC	alt_5892_new	0	0	0	0	0	0	0	0	0	0
AGGACAAACTTCATAC	alt_5892_new	8	15	11	7	11	3	10	11	10	4
CGCCTCCATGCGTGTC	alt_5892_new	14	15	12	6	16	13	14	15	10	11
CTTTTCCATCCTTTCG	alt_5892_new	11	36	25	18	17	21	22	10	19	16
CAGCTTTCACTTTGTG	ref_5892_new	98	112	79	63	98	86	94	92	106	65
TTCGAGGCCGTTTGGT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
ATTGATTAGTGAGGAT	alt_5892_new	84	95	99	97	94	104	100	95	105	79
ACGAATAAAGTTTTTG	alt_5892_new	1	2	2	6	0	1	3	4	0	4
TGTCTTTGGAATCCCC	alt_5892_new	10	20	21	11	15	14	20	7	23	18
CATTCTACGTCAGATG	alt_5892_new	102	137	119	92	122	96	118	103	120	84
GCAATATTACCTTACT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GAATGACACTCGCTCA	alt_5892_new	3	2	7	8	15	3	6	4	4	5
TATACGTCATGATTAG	alt_5892_new	57	45	45	48	35	42	42	33	43	37
GATCCTCTTGCGTGTA	ref_5892_new	22	21	18	17	30	19	27	23	19	12
CAACAACCTGTATCCT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GCAGCTTTTTGACATC	alt_5892_new	12	11	13	11	10	17	7	9	16	11
CTGCAAGAGTCTCGTC	alt_5892_new	38	31	42	42	49	39	30	44	35	29
TCCTCTCCTACTTTAA	alt_5892_new	3	0	7	3	5	2	3	3	4	4
AGCCCACCCCTCGTCT	alt_5892_new	11	26	11	13	26	7	29	13	19	8
CAGCAAAGTAGTGCAA	alt_5892_new	14	11	15	10	14	8	11	14	14	12
TAATGTCTTTGTAGGG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TCTGAGACGGGCGCGG	alt_5892_new	1	6	11	4	3	8	9	7	4	6
GTACGTGTGGCCCGAC	alt_5892_new	5	9	17	6	10	17	13	12	11	6
TGGGCGGTGCCTGGTG	alt_5892_new	30	43	42	37	48	34	47	32	54	36
TTATTAGGTATCCTCA	alt_5892_new	15	16	30	17	19	14	25	11	17	12
CCTGGTCATCTGGTAA	alt_5892_new	48	104	80	65	124	70	106	57	154	52
TGTGTGCTTTTTAGGT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GGCTTTGATGTCCCAG	alt_5892_new	37	32	32	62	25	34	39	38	42	30
TCTTGTACAGCTACCT	alt_5892_new	6	14	24	16	26	13	24	17	36	14
GAATTCGGATTATGTT	alt_5892_new	18	15	20	22	21	21	22	16	23	22
ATCGCCCTAAGTCATT	alt_5892_new	5	10	13	2	7	11	16	4	10	12
TCCGTTGTAACTAATC	alt_5892_new	59	81	69	66	76	64	56	38	80	43
CCGGGTGACTCGCCAA	alt_5892_new	27	26	34	22	33	16	20	20	36	26
TGATTCAATTTCCCGG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TGGAGACAGCTAGGCT	alt_5892_new	56	45	62	43	48	40	58	49	65	45
CACTTAATCCTATTTT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GTGCGTATCAGATGTG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GCATTTCTAGACACCG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
CACCGAGTGATAGGCG	ref_5892_new	121	144	155	127	155	137	142	123	181	99
AGTTAGGCGCAGGTCT	alt_5892_new	5	6	0	3	3	6	6	4	6	8
GCGATGGATCGTATTC	alt_5892_new	10	14	18	18	9	12	13	13	9	9
GTGTTTGCTATAAGAC	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GTGCGTGCTAATCTGG	alt_5892_new	2	1	0	1	2	3	0	0	0	0
CCGTTCACACACATCC	alt_5892_new	1	17	9	4	13	2	12	3	14	1
CGCTTGCGCCGGCCCA	alt_5892_new	41	42	43	46	46	42	38	45	40	43
ACTACGCTACTCATTT	alt_5892_new	37	38	27	44	34	27	41	29	33	30
CCCGCGACTGCTTAAC	alt_5892_new	156	166	204	180	167	158	168	115	193	118
TTACGACGATACTAGA	alt_5892_new	0	0	0	0	0	0	0	0	0	0
CCCGGCCAAGAATGTT	alt_5892_new	8	7	6	2	10	2	11	5	11	6
GTAATATCTTGGTCAG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GCCAATGCCAGCCATG	alt_5892_new	9	3	12	8	8	5	11	6	13	6
TGCGCGGTTTGTTGAG	alt_5892_new	17	21	6	14	14	17	28	11	15	11
GGGGTTCGGTCAGCAG	alt_5892_new	33	34	55	42	43	52	40	40	43	43
TCTGAAGATATGATCC	alt_5892_new	0	0	0	0	0	0	0	0	0	0
AGTATGGCTTTAGTTT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TTCCGTATGTAAAAAT	alt_5892_new	22	26	21	36	23	30	30	23	27	18
TTCGCGCCAGCTTTCA	alt_5892_new	12	11	19	16	16	18	12	14	13	15
TGCAGTACCCATAATA	alt_5892_new	19	29	31	31	23	21	26	25	30	20
GCAAGACCGCACAATC	alt_5892_new	13	7	11	6	7	4	12	5	3	5
CCCATCGCTGTCCAAG	alt_5892_new	16	26	15	19	35	16	24	17	43	13
TATCTGTCAGGCACCG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TGAGTACTTGAATGTA	alt_5892_new	7	6	7	5	18	6	14	8	15	6
CTCTTCAGTATTTACT	alt_5892_new	32	41	41	36	43	16	44	23	42	32
ACGTACCATAATCGAC	alt_5892_new	76	114	114	90	117	89	130	88	123	78
CCAGTTCATTTCCCGC	alt_5892_new	10	14	10	10	14	4	20	3	23	10
GCCCCTGGGAATCAGT	alt_5892_new	18	19	17	25	28	13	19	16	27	21
TGTATGACATCGTGAA	alt_5892_new	17	15	8	19	12	15	9	17	20	8
AGTGTAGGGACATTCT	alt_5892_new	4	5	10	6	9	3	6	2	19	7
GTCATCATAAATCTTG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
ACTTATGTTCGTTTCA	alt_5892_new	42	37	33	35	30	31	48	42	47	39
GGCGTGCAGTTCAGTG	ref_5892_new	74	82	71	48	70	69	98	73	79	65
AGTGCTATTCAGAACG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
CAAGTGGTTCTTAGAT	alt_5892_new	6	4	8	4	11	12	4	8	9	8
CGAGTCATAGGGCGAG	alt_5892_new	4	4	4	2	4	0	3	4	3	1
GCTGGACAATGGAGGC	alt_5892_new	42	31	44	56	44	43	36	44	46	47
TATTTTTTTTGTTGCT	alt_5892_new	4	1	13	12	9	9	18	5	9	11
TCAGGCTCTCTGCGTT	alt_5892_new	2	10	7	5	6	4	9	5	12	5
CGTCGTAGTCAGAACA	alt_5892_new	9	12	14	5	17	4	11	6	6	4
TGGAGATGTGGGTGAT	alt_5892_new	12	9	11	15	14	9	25	9	12	10
AGGGTATCTTAGATAC	alt_5892_new	11	8	7	9	6	10	15	5	11	4
TTTAGGGATCTCCGGC	ref_5892_new	11	11	2	7	4	5	11	4	3	5
ACACCAAATGTGCTCT	alt_5892_new	2	14	4	3	3	3	4	0	11	0
CCTCCATAACTATGGG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GTGGCAGAAATCCAAT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GCATTCCGCTTTGAGT	alt_5892_new	29	41	38	31	40	34	62	31	42	37
ATAACATAGTGTTGAG	alt_5892_new	37	54	47	44	65	31	52	52	31	43
GGAAATGCAAAATTTG	alt_5892_new	14	23	16	13	19	13	19	11	26	10
GGCGGATTATTGATCC	alt_5892_new	78	75	70	60	75	63	97	49	76	55
ACAGTATCATATGCTC	ref_5892_new	57	62	51	54	37	41	84	49	55	43
CTGTCCAGTCGAACCC	alt_5892_new	10	10	16	12	14	6	4	13	10	4
GATCGGGGCCCACAGA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GCCCGTACTCCCAACT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TGCTTGGTTCTATTGC	alt_5892_new	0	0	0	0	0	0	0	0	0	0
GCTTTAACTACATTAA	alt_5892_new	13	12	9	14	27	5	14	9	17	12
TTGCTTCTCAAACTCA	alt_5892_new	23	35	37	22	22	18	30	25	42	21
CTTTTACCCTCACGCG	alt_5892_new	9	9	16	9	7	16	13	9	16	13
GCGGTTTTCAAGCCCT	alt_5892_new	0	0	0	0	0	0	0	0	0	0
TTTAGAGTCGTTTAGC	alt_5892_new	3	9	12	9	4	6	11	7	7	6
CATTAGATTTCGCTCC	alt_5892_new	13	12	13	14	15	7	8	10	18	10
AGTGTGGTTCATTATA	alt_5892_new	55	57	71	56	65	52	41	45	59	35
TATTCGCGCGTTTAAA	alt_5892_new	27	31	28	24	31	27	47	22	36	26
CCAAGTTTTGTAGTTC	alt_5892_new	15	37	27	28	49	22	34	24	45	19
CTATAAACCATTCTTG	alt_5892_new	0	0	0	0	0	0	0	0	0	0
ACTATGTGATGCTGTA	alt_5892_new	37	28	33	34	33	22	31	28	34	27
CGATTGTTTCTCCCGT	alt_5892_new	4	7	6	6	7	13	18	3	6	9
GGTCCCCGAATCAGTA	alt_5892_new	20	12	24	9	23	13	20	10	25	11
ACCACCAACTACTGGC	alt_5892_new	27	30	34	28	28	31	37	21	48	25
GCAAACATCGTGGGAA	alt_5892_new	8	9	14	9	5	10	11	3	7	6
TTTACCGTGTTTATGT	alt_5892_new	102	101	153	148	108	99	115	97	91	113
ATCGACCGCAGGGGCC	alt_5892_new	0	0	0	0	0	0	0	0	0	0
AGATATTTTGTGCCAC	alt_5892_new	64	44	80	71	60	54	58	53	57	53
AAGCAATAGTGAGAGG	alt_5892_new	7	15	19	6	6	7	12	6	17	10
CCAAACGTACATCACA	alt_5892_new	1	3	2	2	7	4	2	4	6	0
GCTTCTAACCCAGATG	ref_5892_new	23	39	43	37	47	22	48	32	33	25
CGGCTTGTGAGTAAGT	alt_5892_new	6	19	14	6	15	8	14	6	25	3
GTGTATTTTTAACAAC	ref_5892_new	315	419	386	300	420	325	428	264	475	270
GATCATAAAACGTACT	alt_5892_new	154	155	167	120	139	141	155	148	184	104
CCCGGGTCATCGGCGC	alt_5892_new	6	14	12	9	16	8	9	7	14	14
CCTTGAGTATCTTGAG	alt_5892_new	6	15	17	5	14	14	16	8	15	9
GGACCCACGCACCTGA	alt_5892_new	3	4	5	2	5	0	4	3	3	3
TACCTGAGTACCATAG	alt_5892_new	6	3	13	12	4	11	17	17	8	12
CAAGGACTTGATTCTA	ref_5892_new	151	163	172	158	166	121	156	149	170	135
CTATCGCCTGGTATGC	alt_5892_new	48	51	53	42	67	53	64	38	71	44
ATTTCTTACATTTAGC	alt_5892_new	138	139	182	161	142	123	183	119	167	114
TATAATGGATCTTTGA	alt_5892_new	0	0	0	0	0	0	0	0	0	0
AAGCAAAGCCCATTTC	alt_5892_new	56	71	71	62	63	39	85	38	59	44
CCTATATTTACATACT	alt_5892_new	6	13	12	12	17	10	11	8	17	5
GCGGTTTTTCTACTTA	alt_5892_new	12	10	10	8	17	12	15	8	8	10
TGGTCTTATGCGATAC	ref_5673_new	9	17	6	5	16	10	15	11	19	10
TCAGTATGCCTGCCGG	ref_5673_new	20	23	23	37	22	16	25	18	22	15
CCCGACTACGTGTAAA	ref_5673_new	14	27	24	12	23	10	28	18	29	8
GTTACCATGCGGTTAT	ref_5673_new	33	24	24	34	32	19	34	39	40	33
TGGGTCCATGACAGGC	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TTCATGACAATGAGCA	ref_5673_new	0	0	0	0	0	0	0	0	0	0
AGTGCTGTGCGTTCAG	ref_5673_new	13	22	36	26	19	23	30	21	28	32
TTATACAGTGTTATAT	ref_5673_new	9	9	12	8	12	7	10	6	5	5
CTTCTATGTCCTGACT	alt_5673_new	180	172	222	168	162	175	170	153	154	154
CAATTATCGAATCAGG	ref_5673_new	9	10	14	19	11	16	14	11	5	9
ACCGTGGAGGCTGCGG	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TAGCCATAGAGTGTTA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
AGTTCCGCCCTTGCTA	ref_5673_new	67	39	53	53	38	51	38	59	44	46
TCCTCCGGAGGCGAGA	ref_5673_new	22	12	18	16	14	17	14	14	14	27
GTTAATTCGTTCCTTA	ref_5673_new	108	80	120	79	81	85	69	86	97	68
CCGCGTCCTGATTACG	ref_5673_new	24	29	43	27	43	18	48	21	43	33
ACTCCTCACGACTATT	ref_5673_new	4	15	4	2	31	6	28	5	33	10
GCCCAAGCCAGGGATT	ref_5673_new	38	44	65	45	60	45	47	51	63	36
CAGCCGCTGGGTTATT	ref_5673_new	1	15	8	8	17	6	19	7	33	2
CACTCGTTCCGCATAT	ref_5673_new	29	74	30	21	81	19	74	23	84	19
TCGACTTCGTATGACC	ref_5673_new	24	20	26	37	27	18	15	17	18	20
TTAAGTCCCTTGGAAC	ref_5673_new	0	0	0	0	0	0	0	0	0	0
GAGAGTATTGGTGATA	ref_5673_new	0	0	0	0	0	0	0	0	0	0
GTGATGGTTCGCGAGG	ref_5673_new	0	0	0	0	0	0	0	0	0	0
ATTCGCGTGTCTACTA	ref_5673_new	85	85	85	91	81	86	81	85	104	77
CTCGGTATTCGCTATC	ref_5673_new	35	54	40	50	50	35	61	43	56	39
CTGAGTTTTGGTATTC	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CTCACCCCCAGTACCG	ref_5673_new	105	84	88	94	65	87	85	73	98	79
GGGATTTGTCTTTGGA	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CCCTTCGGCAGCCCGT	alt_5673_new	2	7	1	11	3	3	3	3	3	5
CCTAATATGGTGTGTA	ref_5673_new	18	16	20	17	17	32	14	16	18	13
TCGCGCCTACACTGTA	ref_5673_new	28	34	46	36	36	33	31	40	39	30
GGTCTTGTTTTCCGTA	ref_5673_new	0	0	0	0	0	0	0	0	0	0
AAGTCACAATTAAATA	ref_5673_new	72	79	88	76	55	76	73	75	73	74
CGTCGTGTCTGGTCGC	ref_5673_new	4	5	6	5	6	2	16	5	4	8
GACCAGCTCTGACAGC	ref_5673_new	19	11	12	19	16	14	11	14	23	8
TGAGAACGGGCGTGCC	ref_5673_new	233	220	306	281	229	236	210	248	268	206
AAGGTTTCCCGGAATA	ref_5673_new	120	117	164	132	139	134	119	119	124	116
GTGCTCTGGTCTAGCT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CTTCCCCTGTCTTAAG	ref_5673_new	24	79	41	37	79	34	80	27	77	15
TCATTCATATCGGAAG	ref_5673_new	81	86	84	88	71	90	87	76	96	75
TGCGTAGTTCGCGTCG	ref_5673_new	0	0	0	0	0	0	0	0	0	0
GATTAACGATAAGTCA	ref_5673_new	25	23	38	33	23	15	26	23	35	18
TCTGCACCCATTGGTG	ref_5673_new	81	58	84	89	64	71	84	70	89	58
CTCTTTGGCGCGTAGG	ref_5673_new	47	42	56	34	31	29	46	46	48	34
GGCCTTCAACGTACAT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CGGCACACTAGGGGTT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TTACTCGCAGTTTTAG	ref_5673_new	0	0	0	0	0	0	0	0	0	0
GCCTGTGACGAAGTTA	ref_5673_new	12	13	19	9	8	10	9	14	14	9
ATCAGCTTGTCAGTGA	ref_5673_new	14	20	32	33	25	22	17	15	21	20
GAGGATGGTCAGTATT	ref_5673_new	48	46	61	50	28	48	43	40	37	34
TTAGGCCATATGTGTC	ref_5673_new	18	35	22	31	40	19	29	22	35	21
TCGTAAATTAACGTGC	ref_5673_new	11	22	23	15	18	17	16	10	18	17
GCGCAATCTCCTGTGT	ref_5673_new	63	41	57	60	52	37	45	53	43	41
CCCCATCATCGCTAAC	ref_5673_new	175	135	164	156	122	205	174	143	153	167
TGAGCCCAACAAACGG	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CATATCCCGGCTCCCG	ref_5673_new	74	57	85	80	68	55	62	51	76	65
CTCGTCGTTCCGCCCT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TTGTCCCTCTTAGAAA	ref_5673_new	14	14	13	6	10	14	11	6	20	18
AAGCTGGAATCCCATA	ref_5673_new	26	17	29	36	26	21	27	32	29	29
ATGTTCGAGCCTTCAT	ref_5673_new	55	73	71	73	56	85	73	49	90	54
ATAGCTATACTGATAC	ref_5673_new	50	30	64	26	37	43	30	42	36	36
CGATTGGAGCAATGAT	ref_5673_new	41	20	49	43	31	38	39	34	22	19
GTGTGCAAGAGGCTCG	ref_5673_new	73	72	101	78	86	69	96	71	125	83
GTAGTAGTTCGGTTGG	alt_5673_new	82	81	101	101	69	89	84	76	97	83
TGATGTGCCAGATGGA	ref_5673_new	29	44	44	33	27	27	26	33	39	21
TCTTTGTAATCTGTTT	ref_5673_new	215	214	266	186	197	194	202	205	241	189
TTCGCCTTCCCCTTGG	ref_5673_new	14	19	18	13	12	9	16	14	12	22
TAGTTTTGATGTATTT	ref_5673_new	25	25	25	21	10	22	23	16	20	8
TCAAGAAGCCTACTAG	ref_5673_new	26	31	28	29	37	33	29	16	21	40
GATCTTTAATCTTAAC	ref_5673_new	296	311	360	304	322	274	329	273	330	271
GCCCTTCGCGCATTTA	ref_5673_new	69	67	81	66	70	68	77	52	64	53
CTTTTCCGGATTTGCA	ref_5673_new	18	9	34	8	15	20	15	8	8	11
TGTAAGTTCCACTCGT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CCCGTTGCCTGTATCA	ref_5673_new	113	118	141	127	124	113	116	100	104	92
GAGTCCGGGTTATAGA	ref_5673_new	45	41	58	53	63	37	47	47	48	51
GTAGGCATTTTACGAT	alt_5673_new	37	33	48	26	69	47	33	39	42	41
TCGCCGCGGGATTTAC	ref_5673_new	32	41	50	42	37	44	50	45	48	34
TCCGTCCCCCAGTCTT	ref_5673_new	19	27	14	14	23	21	29	23	35	14
TGGATACGGGTCTGGT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TTCACAAAGACGGATC	ref_5673_new	126	101	141	82	109	114	102	120	98	83
TGATTACGAGCAGTGG	ref_5673_new	0	0	0	0	0	0	0	0	0	0
GCGCTTTTAAGGGTCA	ref_5673_new	210	172	221	208	217	186	191	170	198	159
GTAATTATTATCCCGT	ref_5673_new	37	34	37	34	22	27	38	32	41	25
GTGCGCAAAAAGGCGG	ref_5673_new	210	214	248	211	207	203	192	158	219	155
TAGAAACACTTCAAGG	ref_5673_new	7	4	10	6	5	3	8	4	8	9
CGCTGGTGGCGTCCTG	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TCAGAACCGCATCGTC	ref_5673_new	1	3	3	0	3	0	4	2	2	1
CTCCGAATGTGTAGGA	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CTCTGACCTCACTCGA	ref_5673_new	4	17	6	9	24	16	14	14	9	6
GGCCAGTGAACAACTC	ref_5673_new	111	102	145	100	117	98	149	93	146	119
TGAGGGAAACCCGCCT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
CGCGCGATAGCCCCGT	ref_5673_new	49	34	46	42	39	47	39	33	45	45
ATTACTAATTTTCTAT	ref_5673_new	141	102	167	120	136	125	118	172	128	139
CGAACGAACGGCCAAT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TTTCTGACGTAGGTGA	ref_5673_new	0	0	0	0	0	0	0	0	0	0
ATGGACCTACGTACCC	ref_5673_new	0	0	0	0	0	0	0	0	0	0
ATTCGCTCCTGAACCT	ref_5673_new	9	12	15	20	12	15	10	12	10	11
AAGTTGCTGTCAACGG	ref_5673_new	30	34	39	38	33	32	35	26	31	32
TTGTGCTCGCAGCTCC	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TCACTATGTCAGGAAC	ref_5673_new	5	5	0	1	5	1	1	0	4	3
TGTATGGCTGTTGAAC	ref_5673_new	45	45	66	39	36	61	59	47	64	42
ATGCGTCTATATTCAA	ref_5673_new	16	24	15	26	20	17	23	22	24	22
GCACTTGACACTAGCG	ref_5673_new	75	82	78	58	75	57	62	65	102	63
CGCGCACCTTCCAGAG	ref_5673_new	86	80	73	75	73	78	58	47	78	94
TGGGTAGAGCTCTGGC	ref_5673_new	21	19	30	18	23	30	34	19	25	20
CCCTAGGTGGGATTGG	ref_5673_new	32	24	43	38	45	31	43	31	33	29
GGATAGGTTTACTTGT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TAGTCAAACGCATTCT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
TGAATGTCTAGTAATA	ref_5673_new	47	42	62	42	45	39	45	32	39	53
GCATCCATTACACGTC	ref_5673_new	15	16	25	17	26	14	12	22	30	9
GTTCCTTCGTATCTTT	ref_5673_new	0	0	0	0	0	0	0	0	0	0
GCCTTTAATTGTTCTA	alt_5916_new	0	0	0	0	0	0	0	0	0	0
CGTCAACTGATTTATC	ref_5916_new	74	152	83	70	158	89	158	66	162	45
GAGGTGGCCCCATAAC	ref_5916_new	43	52	57	32	58	45	69	45	79	38
TCAAAATTATTGACTT	ref_5916_new	66	108	87	95	80	54	119	66	133	61
AAGCTCGCCCCCATAA	ref_5916_new	7	15	8	9	6	10	8	4	5	6
GAAGTGAAGGTATGAC	ref_5916_new	8	20	13	7	16	9	16	15	15	5
ACGGTAAAACAGTGTC	ref_5916_new	0	0	0	0	0	0	0	0	0	0
TGATGAGTGGCAACTC	ref_5916_new	8	9	8	2	13	4	12	4	9	4
CATGTCTAAATTCTGG	ref_5916_new	24	33	35	15	24	14	55	21	51	16
CGCTATTACTGGATGG	ref_5916_new	5	7	5	2	10	6	1	1	4	7
TAGATTTACTTCACTC	ref_5916_new	47	76	43	41	56	38	53	44	69	33
AATACCCTGGTGGACA	ref_5916_new	24	18	18	6	22	10	20	15	14	11
CCAGAATAAAATTTAG	ref_5916_new	0	0	0	0	0	0	0	0	0	0
TTAGATTGGTTTAAAG	ref_5916_new	45	101	61	54	100	56	94	62	99	46
TTTGGGGGATTCCCGT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
GTCGTTTAAGTAGGAG	ref_5916_new	45	56	38	37	57	42	61	38	71	30
ATTTCCACGCCTACAT	ref_5916_new	3	7	3	2	4	10	11	6	7	2
TGATTAAAAGCACGAT	ref_5916_new	176	259	207	183	269	146	234	167	259	146
GGCCCTTTTACCATTT	ref_5916_new	56	65	66	64	94	58	111	44	81	55
CATTCAGTCTAATTGG	ref_5916_new	64	76	70	57	89	57	84	55	101	39
TTTGTTTACGGTCTAC	ref_5916_new	11	15	9	15	21	4	14	7	21	9
AAAGGAGAATTTCCCA	ref_5916_new	7	6	5	10	17	12	9	11	8	12
CCTTCCAATTCTTTGT	ref_5916_new	5	20	9	4	15	3	26	8	19	5
AGATACGATAGGCCAA	ref_5916_new	0	0	0	0	0	0	0	0	0	0
GTCCAAGTCCCGGCGT	ref_5916_new	3	0	0	1	7	1	3	4	4	1
AGCCGCACCTCTCGTG	ref_5916_new	53	86	64	70	78	54	97	47	83	34
GATGCCGATTCTAAGA	ref_5916_new	30	47	34	27	32	33	46	23	58	28
CCGCCAGACCTTCACT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
TTTTATGCGGCACACT	ref_5916_new	69	99	100	69	96	54	119	60	97	66
AGGCTTTAACGTCCAT	ref_5916_new	4	14	8	9	5	3	7	4	6	5
CGTGTGTATCTATACT	ref_5916_new	100	166	109	94	170	98	174	65	152	66
TCGGTTTCATGATGGA	ref_5916_new	147	201	158	167	193	145	202	147	186	149
AGATTCGGCCTATCGA	ref_5916_new	14	13	18	17	13	11	22	6	14	14
AGTGTCGATCTCCATT	ref_5916_new	5	4	6	1	4	2	2	1	4	2
CCCAGAATACTCTTTT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
AAAAAAGTGCGTTTCG	ref_5916_new	16	23	19	11	28	12	19	13	28	17
GCCTTATATTGGAAAT	ref_5916_new	4	4	1	0	1	2	4	1	4	1
AGCAGCCTAGCCGTTT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
GAATACACTGTTTGTT	ref_5916_new	31	45	28	25	49	20	50	30	58	32
GGAATGGCTGCCTGCT	ref_5916_new	47	52	49	54	69	53	39	57	52	44
TGGCACTCAGATGGTA	ref_5916_new	8	8	9	7	10	6	20	11	14	5
GATAAGTTGGGCTCCT	ref_5916_new	34	54	41	46	48	35	49	26	56	20
ATGCACCTCACTTTCA	ref_5916_new	13	23	22	18	21	15	22	15	32	9
AACTAGCCTATCTATG	ref_5916_new	12	12	17	11	18	10	14	8	25	6
CTACGTCGTGAAACCT	ref_5916_new	11	13	7	10	18	7	16	11	15	10
CCCTTGCAACGAGGCT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
TAAATGATGGTCGGTA	ref_5916_new	47	75	65	70	74	67	86	48	63	48
ATTTTGTGATACTCAT	ref_5916_new	0	6	7	8	11	9	6	4	6	4
TTCGGTGGCCTGTAGC	ref_5916_new	24	36	25	19	37	27	32	31	46	29
AATGTATTCGGATTTT	ref_5916_new	55	65	91	64	64	41	85	48	63	43
TATCAATTGTGGTCGG	ref_5916_new	115	148	117	124	133	125	171	114	146	100
ATTCGCTCCTCACAGT	ref_5916_new	42	50	31	32	43	27	65	17	45	18
TACGGGTTGCAGGATG	ref_5916_new	11	17	9	9	9	9	11	10	16	17
ACAAACGGCAGTCGTA	ref_5916_new	86	90	86	62	130	55	112	63	118	75
TTTCTATCTATTCTGG	ref_5916_new	72	109	74	66	99	57	127	61	114	47
TGTGAGTCAATACATC	ref_5916_new	0	0	0	0	0	0	0	0	0	0
GGGCATCAAATATTAG	ref_5916_new	12	22	6	9	11	6	18	10	21	7
TCCTCTGATTTTTATT	ref_5916_new	123	137	144	139	170	123	166	153	154	109
GTTCACTGAGGCTCGG	ref_5916_new	58	85	81	51	78	74	99	56	106	48
CCACTTCTATTTTTGC	ref_5916_new	27	47	23	26	53	16	46	21	64	17
CGAGTGAGGTGAGCTC	ref_5916_new	60	64	52	47	74	34	66	39	74	48
GTTCCGATATGGGATT	ref_5916_new	16	24	21	13	20	16	18	13	23	11
TTATATGTACCGCCCC	ref_5916_new	5	12	9	5	20	11	25	12	9	13
GTCTCGGATTTTCATT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
GGATGATTTAGTCGTT	ref_5916_new	50	68	45	58	57	43	70	42	69	40
GGTTCTTGGAAACTCA	ref_5916_new	1	5	5	2	4	3	3	2	3	2
TGGGAAGTCGGGCCTT	ref_5916_new	16	15	20	21	14	12	12	16	25	15
GGCTAACCTTTTAATG	ref_5916_new	83	124	99	82	139	81	116	96	145	99
TCGGGCTGGTGGACGT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
ACTAGTGATTTTACAG	ref_5916_new	30	47	38	27	47	39	51	24	60	29
ACACGGATACGCCAGA	ref_5916_new	0	0	0	0	0	0	0	0	0	0
TTATACCGGCTTTTGG	ref_5916_new	14	23	10	19	28	5	26	16	24	12
GGAAGTGCCATACTTT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
TATTCCCATGTCTCAG	ref_5916_new	47	51	38	41	44	41	50	26	43	47
GCCCTTACGAGCCTAT	ref_5916_new	96	90	94	86	110	74	98	81	111	87
TTAGGATCGTTCCCCG	ref_5916_new	0	0	0	0	0	0	0	0	0	0
CTGGGGAATGGGTGCA	ref_5916_new	11	19	22	25	27	11	32	14	34	21
TTGTTTTAATATTAGT	ref_5916_new	9	13	7	13	12	7	18	7	15	5
GGCTTGATAACTTCCT	ref_5916_new	33	45	53	30	48	26	48	26	44	29
CCGTCTTGACGTAAAG	ref_5916_new	5	32	1	4	48	6	30	4	34	4
ATGTCATCGCCCTAGT	ref_5916_new	32	50	49	43	40	27	55	27	40	26
CTTCATATCCGCAGTA	ref_5916_new	39	42	41	39	56	28	48	25	45	40
CCGAATTCCGATCTAT	ref_5916_new	4	10	4	7	8	4	4	4	14	1
GTGGGCTCATTTGGAA	ref_5916_new	9	8	7	6	7	6	9	8	17	5
AGGCATCTTGTAAATG	ref_5916_new	18	33	35	18	36	19	34	16	37	19
GGGATGATGCGATCAT	ref_5916_new	61	81	94	72	95	83	105	58	142	57
GCTATCCTCTCCGGTT	ref_5916_new	0	0	0	0	0	0	0	0	0	0
CGGTTCCTCTGCCTTT	ref_1762_reverse	61	132	43	48	88	37	103	44	125	51
TAGTCTGGCTGGAATC	ref_1762_reverse	26	43	22	21	34	25	43	20	49	20
CTACTACATCCGCATA	ref_1762_reverse	19	66	29	32	66	20	62	32	57	28
CCTTGTGAACGGACGA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGGTCGGGGGGCC	ref_1762_reverse	34	48	42	25	29	15	44	29	60	16
CTGTTGAGTATTCGAG	ref_1762_reverse	24	45	19	24	33	26	47	26	39	23
TCGGCTCCTCTTATAT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCGGTCATTCTTG	ref_1762_reverse	1	3	0	2	12	7	9	1	4	2
AGTTCCTCACGTGTAA	ref_1762_reverse	5	11	8	8	13	3	16	6	14	7
AGTACGTTGTGTTCCC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
AACTGAAGATCAACCA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGGCGTATCTTAA	ref_1762_reverse	15	19	8	12	24	11	13	12	9	7
TTAATCCAGGTTTAAG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
AAGAGCTTTTTTGTAA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GGAAAGCTCGGTCTCA	ref_1762_reverse	97	146	115	99	141	118	183	104	178	88
GCGTTCTTAATACCTC	ref_1762_reverse	24	40	35	20	43	18	32	22	25	15
ACACGACTAAATTCAT	ref_1762_reverse	0	1	3	3	2	1	3	2	7	1
CACGGTCAACCTCCCA	ref_1762_reverse	33	104	47	29	85	27	83	26	72	42
CCCGTTTACACTTTGA	ref_1762_reverse	16	49	16	14	63	12	55	10	58	12
GAGCTATTCGTGTCCC	ref_1762_reverse	126	231	168	128	257	137	244	149	273	139
GAAGCCCTTAGTCCGA	ref_1762_reverse	43	68	52	39	89	37	66	42	93	36
CGGTTGCGTCATTTCT	ref_1762_reverse	12	14	8	6	18	16	13	8	15	7
TTGGAAAGACAATTAA	alt_1762_reverse	25	55	40	35	50	26	56	37	41	36
GGGGACATAACGCCAT	ref_1762_reverse	5	2	10	6	7	5	11	5	5	3
TTTTTCCCGGAAGGCA	alt_1762_reverse	43	67	52	44	52	51	77	48	76	40
TATCTTGCAATTTTTC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTACCATAATCGG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GCAATCCCGTCGGCTT	ref_1762_reverse	95	128	83	95	148	88	153	80	171	55
AGTCGGACCCCTCTTC	ref_1762_reverse	50	91	68	40	66	43	70	45	86	48
ATACTGTTTCCACCGT	ref_1762_reverse	38	82	55	42	89	51	71	60	78	38
CCGAGGCGCGAAGAAC	ref_1762_reverse	9	10	15	6	20	4	15	6	12	9
GGTTTACGTAGGAGGC	ref_1762_reverse	9	18	17	7	25	14	15	8	29	14
GATATGGATTACACTT	ref_1762_reverse	13	33	13	19	19	14	22	13	26	12
GTGGGGACCCCACACA	ref_1762_reverse	20	33	27	19	32	26	34	26	56	37
CATTAATCGCAGTACC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGGGACTGACCGA	ref_1762_reverse	5	10	7	2	7	5	10	6	7	5
GAACAACCGGAGGCTC	ref_1762_reverse	43	47	34	53	55	45	64	44	59	44
ATGAGTGCGGTTATTT	ref_1762_reverse	4	8	1	5	12	5	6	5	3	4
GGCGATGTATCTGTGA	ref_1762_reverse	5	5	3	1	5	6	8	4	7	7
CATGGCCGACTTATGA	ref_1762_reverse	4	3	9	2	6	5	8	1	11	3
CAGTGTCATTCCCCTT	ref_1762_reverse	3	10	2	3	14	1	18	5	13	2
GCAGGTATCTGCCTCG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCGCATTCCGGCCTTC	ref_1762_reverse	7	8	4	4	15	4	11	1	12	2
CGCCCTTGACTATTAC	ref_1762_reverse	1	6	4	1	4	2	6	4	4	1
CGACACTGGCAATCCG	alt_1762_reverse	55	90	67	47	105	54	109	59	103	65
ATAGAGTTATGCAATC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGTCCGTGGGATA	ref_1762_reverse	71	124	72	69	121	76	142	50	134	57
ACCGCGGATAAGGTCT	ref_1762_reverse	44	71	44	43	78	29	113	36	77	32
ATCACGCCAACACATA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CTACAGGTCATCGTAA	ref_1762_reverse	22	13	9	12	18	13	19	13	27	7
GCGGCCAGGGTCCATC	ref_1762_reverse	3	12	10	13	9	2	8	9	13	9
CGCAGCCAGTGATCCC	ref_1762_reverse	11	19	14	13	17	8	12	15	15	14
AGGGTAGTGATGCTTG	ref_1762_reverse	9	14	8	8	13	15	16	15	15	15
TCGGATCTCTGGAGGG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCTCGGACCCTAT	ref_1762_reverse	195	321	233	228	270	209	313	166	296	224
TCTACCAACGGATTTC	ref_1762_reverse	2	3	1	0	2	2	1	4	0	1
CACATGCTATTGCCGA	ref_1762_reverse	84	124	76	83	142	84	151	83	145	62
AATATTGGTCTATGCG	ref_1762_reverse	11	22	16	10	20	9	21	15	25	8
ACGGTTTACGTTTGCC	ref_1762_reverse	65	97	84	68	92	57	113	43	97	41
AATGTCTAGAACTCCT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCTATGTTAGGAA	ref_1762_reverse	17	38	20	14	31	17	46	8	30	10
GCTATCAATCACACGC	ref_1762_reverse	15	8	17	14	21	6	14	6	27	5
TCGACTGCACCTAGTA	ref_1762_reverse	44	52	46	37	82	33	62	37	83	34
GTTCGTTGGGTGATCC	ref_1762_reverse	24	29	30	18	34	28	36	24	40	24
AAAGATTCCCCTGAGA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGGTTCCTGTAAG	ref_1762_reverse	20	31	19	24	40	21	52	27	38	24
ACGAGGTTTTCGCGTT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTTCGTTCAACGC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GCATGCAAATAGGATC	ref_1762_reverse	0	0	2	2	0	3	1	0	0	0
TTAATTCTGGAGTCGT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTCATCCGTGGAC	ref_1762_reverse	70	106	89	69	130	55	131	69	126	65
AAGAACTTGTTTTGTA	ref_1762_reverse	25	39	34	32	58	40	68	33	46	47
TTCGGATTCCGATCCT	ref_1762_reverse	3	10	4	2	12	8	15	10	7	5
ATATTTCGTTGGTGCA	ref_1762_reverse	4	12	7	11	15	14	13	9	11	6
ACTTCCAAAGTTGGAG	ref_1762_reverse	107	152	83	97	136	95	159	95	151	80
GGCGCGATCCACTCGT	ref_1762_reverse	19	22	17	18	21	12	14	14	25	17
ACTCACAGTTGGCTGA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CATCATGGGATGCTAT	ref_1762_reverse	19	48	27	16	37	31	50	22	44	27
CGAGTTTGCGTCGTGT	ref_1762_reverse	8	28	22	11	22	13	26	9	33	12
GCGTCGCCATTCCTTG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
AGCTATTCAGGTAATT	ref_1762_reverse	64	127	105	52	136	68	157	70	166	71
TAAAAATACGGCGTTA	ref_1762_reverse	54	108	64	51	70	67	75	59	87	69
TCTACGACGAAAACAC	ref_1762_reverse	8	10	12	10	17	10	23	9	25	10
TCGCGCAGGGATGTCC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCAGGCAATAATG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TATTGGCGTATGTTAC	ref_1762_reverse	12	19	15	8	17	13	25	12	19	12
CATACAGTGACTGGCT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTGCGCGCTCTAG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGCGGTAACACCG	ref_1762_reverse	4	3	4	4	5	7	4	0	8	4
TGAGTTGTAACGCCAT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATAATGTCTCATATGG	ref_1762_reverse	12	50	28	23	37	22	64	22	49	11
CTCCATCTTGGATGGT	ref_1762_reverse	29	47	37	27	28	31	36	30	48	15
AGAAAACTATGACGCG	ref_1762_reverse	51	64	39	43	56	46	66	49	78	29
GGCAAAAAAGCAGTAT	ref_1762_reverse	13	49	25	22	29	28	36	16	25	11
TTGAACGGATCTGGTA	ref_1762_reverse	20	38	25	14	39	25	36	16	36	20
AAAAAGGGCTCATTTA	ref_1762_reverse	16	20	11	11	24	15	22	15	23	12
GGCACAACTTGCCATG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GCACCCCACGGCACTG	ref_1762_reverse	58	114	78	72	111	83	103	52	121	60
TGTTTGGGTGGTCGTT	ref_1762_reverse	1	2	3	1	2	1	1	0	7	6
TAGGAGGGAGGCGGTC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTAATTATTTGTG	ref_1762_reverse	33	45	40	31	48	36	45	35	47	21
ATTTACATTCTTAGCC	ref_1762_reverse	5	11	2	3	7	6	8	4	9	5
TGGTCCTCATTCAAGC	ref_1762_reverse	30	45	22	22	33	31	60	27	33	17
CTGCAGTAGGCGTTAC	ref_1762_reverse	35	83	37	43	69	36	73	34	83	39
TGGTCGGTTTTCTTAA	ref_1762_reverse	25	37	33	28	56	17	38	19	38	18
ATCTGGCAAACCTTTC	ref_1762_reverse	41	56	42	33	57	34	60	47	74	30
ACATGAGTAGTAGCCG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CAGAATGTACCGGTTT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCCGATTGTTTTA	ref_1762_reverse	56	112	70	75	104	60	109	59	107	66
CGTCCCCCAATGATCG	ref_1762_reverse	18	37	29	26	58	31	48	21	72	21
AGGATGGTGAGTCTGA	ref_1762_reverse	6	5	5	4	7	6	6	6	9	3
GGCTTTCCTACGGATT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CGACGTAAGGCTAAAC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GCACCACTCTTACGGT	ref_1762_reverse	63	101	57	61	141	46	111	55	115	59
CACTACCCTTGCACCA	ref_1762_reverse	19	23	17	17	13	11	38	11	26	15
TTATTTCCCGTGTAGA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGTTCCCTGCGGT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CGTAGTAAGTATACCG	ref_1762_reverse	41	63	57	46	64	40	71	34	63	51
CATCACTCATAGCGTG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TATGTCGATTGCTGCA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CACCAGTCAACTATAT	ref_1762_reverse	6	29	10	9	22	6	21	12	26	7
GTCTCTTAGGGTTTAG	ref_1762_reverse	21	28	22	22	20	18	26	24	26	19
CTTTATCTCCCTTACT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAAGAATCAACTA	ref_1762_reverse	2	8	5	5	4	1	8	0	6	6
CGTCTTTCTGAATCCA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CTATTTCAGGCTTTTG	ref_1762_reverse	5	20	11	18	14	12	7	9	27	4
GTAGGATCTCGCTCTG	ref_1762_reverse	7	13	6	9	4	2	7	4	6	3
GTGAGTCGGTGAGTCC	ref_1762_reverse	4	15	13	8	16	5	11	6	10	3
GTCATTTATATTTTAG	ref_1762_reverse	45	62	45	36	92	37	51	36	63	42
TTATCGAGCTAGGAAC	ref_1762_reverse	0	3	2	3	4	1	1	1	4	4
CCCAAATTTCCCGTTG	ref_1762_reverse	54	73	66	69	98	46	107	45	125	51
TAAACCATCCGAGGCA	alt_1762_reverse	24	41	40	41	42	33	54	24	45	19
TTGCTAGTATAAATCT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGTCATATTTAAT	ref_1762_reverse	25	49	39	43	52	32	37	34	52	27
TCATGCGAGGAACAGA	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCGAAGGCTTTCATGT	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTCACTAATAGTA	ref_1762_reverse	17	31	9	20	17	8	15	17	38	10
CCAGATTACCCGTCCT	ref_1762_reverse	5	7	4	8	12	1	15	4	12	1
AAGTTGCATCTTGGCT	ref_1762_reverse	11	27	19	7	20	13	15	8	22	14
ACGTTAATATCGACAG	alt_1762_reverse	7	5	7	13	15	12	8	7	10	6
AATCTGGCTTACTTGT	ref_1762_reverse	14	21	14	7	14	14	25	7	18	6
TATTGATATTGGCGGG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTGTGTACGAGTT	ref_1762_reverse	10	24	14	14	24	8	25	14	28	11
CCGTCGGCTTTGTTTT	alt_4391_missing	102	175	127	98	160	98	177	87	186	92
GCTCTATCTGAGCTGC	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCCCGCGTTTTCG	ref_1762_reverse	28	62	21	21	35	23	34	17	39	28
TCCCGATTTGGGGATG	ref_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTACTCCAATTATCAG	ref_1762_reverse	14	18	14	10	24	11	32	5	16	16
AAGACTTGCCATTCCA	ref_1762_reverse	0	3	8	2	4	3	2	4	4	4
GCCAGTGCCGATTATT	ref_1762_reverse	14	39	21	29	30	21	47	17	46	30
TCCCCTTGAGCCCACT	ref_1762_reverse	3	10	4	7	10	2	8	5	16	5
GTGTAAACGATAAGAC	ref_1762_reverse	6	12	10	3	10	5	16	4	19	4
TTTGAGGCAGAACGCG	ref_1762_reverse	13	21	5	5	9	7	15	8	14	2
TTTCGTACCCTTAGCG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CGGGATTGTTTCTCGC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
GTCCTCCGAGCATTCG	alt_4037_RC	53	38	71	53	34	60	35	61	52	58
TCACAGCTGAGCGTGG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CCCCACTGCCATCCAT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TGGTCGTTCATCAGAA	alt_4037_RC	33	24	32	22	11	23	22	24	26	23
GTAGCGCGGCGGATTC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CGTCTAATCTAACGAC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TATTGCAGAAGGTGGA	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
AACAAGTTTTTACATC	alt_4037_RC	8	8	5	5	8	8	15	8	7	3
GCTTCAATCCTCATAT	alt_4037_RC	22	26	29	23	21	31	22	20	29	22
CTTCACCTCTTGAAGC	alt_4037_RC	23	21	20	21	21	33	23	14	21	25
AGGAAATATTCGCCAT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TTTGCGTATTGTAGCA	alt_4037_RC	77	66	111	75	69	83	69	70	70	79
TATATGGTGATAAAAT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
GATGGAGGATAGGCCT	alt_4037_RC	10	9	9	18	8	9	4	11	8	4
ATGTTATAATTTATAG	alt_4037_RC	0	3	2	0	0	1	2	0	4	2
GCTAGTTGAACTTTGC	alt_4037_RC	15	4	3	5	9	5	5	5	2	11
TGACCGCAGATATGCA	alt_4037_RC	25	14	22	22	14	28	15	13	14	26
ATAAGAGACTGCCGTT	alt_4037_RC	13	5	9	13	3	11	9	6	7	8
ATCCAGCTGAGTAACC	alt_4037_RC	35	18	25	20	14	19	18	22	30	25
GTAGCCGCTTGGTCTG	alt_4037_RC	44	37	54	53	42	54	36	56	50	34
GCTAGTTCTCGTTCAC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
GTATTGTGAATGAGCC	alt_4037_RC	4	5	2	4	0	8	5	3	2	4
CACCGTCAGGTACAAA	alt_4037_RC	17	7	28	8	14	10	14	17	15	9
GTAAAGAGGTATAGAC	alt_4037_RC	16	9	20	17	8	21	18	12	16	11
GCTACGTGTTATCCTT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TCCGATAGACTTACCT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TATTCTTCTTCTCCCT	ref_4037_RC	8	11	27	16	12	9	16	9	14	7
TGTACACTTGGCGTCG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TAGAAAAGGGTGAAAG	alt_4037_RC	27	20	37	34	21	38	22	23	30	21
CATTTGCCGAGGCGTT	alt_4037_RC	82	61	126	82	55	100	52	80	57	96
GTGTGCGCCTACCGTA	alt_4037_RC	25	18	22	17	17	21	13	23	24	20
TGAGAAGTGGCGATAC	alt_4037_RC	44	58	53	49	39	37	42	47	35	47
GGGATACTTCGTCTAT	alt_4037_RC	33	31	60	45	31	33	35	50	31	48
TTTTATTTCACCTTCC	alt_4037_RC	33	21	32	31	35	35	17	34	26	22
TGCATCATGCACGCTA	alt_4037_RC	86	67	104	79	86	69	70	84	76	93
GCTTGTTCTCGTTCAC	alt_4037_RC	231	191	262	251	183	234	214	196	212	222
TATTGCGCGTAAGGTA	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGCATACCACTT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TGGTGGACAGACCACT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
GAAATATAGGTCAGTA	alt_4037_RC	126	113	157	114	115	115	101	102	120	118
TTGCGGTAGTTTTTTG	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
AAGCCACATAGGAAGC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
AAGTATCACGACCACC	alt_4037_RC	8	12	12	10	9	16	10	15	9	8
TAATCCGAAGTCCTTG	alt_4037_RC	20	26	33	18	23	15	25	28	27	27
GACTATGATGTTGTGG	alt_4037_RC	76	82	113	91	83	81	82	73	89	77
TGCAAAACGCGTATGC	alt_4037_RC	107	136	163	110	133	105	123	91	126	102
ACTCGCCGTTCCGGAT	ref_4037_RC	66	51	94	62	47	39	60	58	49	55
TCTAGCTGATTTACTG	alt_4037_RC	108	121	149	104	91	96	122	110	129	90
TTGATCAATCACCCTA	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TGTTGTGACCGCTAAC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
GAAGCCTCCGCGTGGG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
AGACGACCCGTAAATT	alt_4037_RC	0	0	1	0	1	0	0	0	2	0
CTGCAACAAGCTTTTG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
AGAGAAGTGATCTTAT	alt_4037_RC	12	11	6	10	10	13	14	9	6	9
GAGAAAATATCTCTTC	alt_4037_RC	28	26	38	23	21	21	25	24	21	33
GAACCTTACACTCTTA	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TTGTGCGCGCAGTGTC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TGTGCCCTAATCGCTT	alt_4037_RC	0	3	1	4	5	1	6	1	3	3
TCGGAGAGCTCGACCC	alt_4037_RC	1	2	2	2	0	3	0	3	0	0
CGTTAGTGTTCAGTTC	alt_4037_RC	34	24	32	26	30	30	24	25	24	39
GCGTTCCACAGTTGAT	alt_4037_RC	48	39	52	42	27	46	44	40	42	46
TCGTCCGTGGCTCTCC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CGTCGCTCCTTTGAGT	alt_4037_RC	27	29	38	20	27	20	19	15	26	28
TTAGTATTAGTTATGT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TTAGCGAGGTCTTATG	alt_4037_RC	61	53	72	55	53	56	44	53	57	50
CGAACGATATCGACGT	alt_4037_RC	58	42	71	56	40	66	55	54	52	41
ATTGATAGGGGTCAAT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CTTGATGCTTCGCCAG	alt_4037_RC	30	37	34	26	33	45	38	37	35	38
CTGGGTGTTGGCATGC	alt_4037_RC	77	64	85	63	62	51	66	55	68	63
TATGCCGTCGATGTAA	alt_4037_RC	18	20	20	25	19	23	28	20	28	19
ATTCTATATGTATTCG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TACAGTACAGGCGTAG	alt_4037_RC	60	54	77	65	62	51	54	70	63	61
GGATCTCCTTCAGCGG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
AAATGGCAAATCTAGG	alt_4037_RC	28	35	38	36	21	47	34	36	39	26
ACGTGCATGAAGGTAT	alt_4037_RC	58	44	77	68	53	67	50	51	45	52
AGAATTTATAAGTCAG	alt_4037_RC	125	112	150	103	99	127	102	100	124	123
GTCAAATTGGGCCCAT	alt_4037_RC	123	63	140	127	91	118	90	107	98	99
GTAAGTCTTCGCTTAC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CTTAGAGTACACTGAT	alt_4037_RC	41	49	59	40	54	37	55	33	48	33
AATAAGTTTGGTGTGA	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CATTGCCGCTCTTATC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TACAGTCATTTCCCGT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
TTACCGTGGTTCCTGT	alt_4037_RC	4	6	2	1	8	2	4	6	2	2
CCCATTTCCTGGCCTG	alt_4037_RC	46	24	54	37	33	38	26	27	32	32
ATTCTAGGTTAAGGGG	alt_4037_RC	18	17	21	20	18	15	13	15	22	21
CTGAATTTCTGGATCA	alt_4037_RC	28	27	33	26	38	25	24	35	36	24
GCAGTTCTTTTCACCG	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CCAATGTTATACTGTG	alt_4037_RC	24	28	12	31	21	20	39	21	34	14
AGCATAGGTCTTGTTA	alt_4037_RC	11	12	25	12	14	22	11	15	12	12
GGCAACGCATAGGTGT	alt_4037_RC	8	5	2	1	2	3	9	2	4	3
TCTCTCCTCCAGGATA	alt_4037_RC	25	20	29	29	17	31	20	22	30	22
TTGATGCCCTCCCGCG	alt_4037_RC	134	87	166	133	97	122	94	120	82	122
CTTGTGCATTACCGCG	alt_4037_RC	65	55	64	46	50	69	70	56	60	56
GCATTACACGTCTCTT	alt_4037_RC	60	40	70	54	54	48	51	61	56	50
ATTTGTGTCCCCTCCA	alt_4037_RC	80	49	64	60	51	54	46	53	58	41
CGGCCCCGTACGACAT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
GGTCATTTGTTCTGGA	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
CTTACTACTCGTCCGT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
AATACGACATCGATTC	alt_4037_RC	26	24	31	30	20	38	19	18	15	30
CTATGTCTTCCTGCCT	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
GTAATTATTCAGTTGA	alt_4037_RC	61	51	61	66	56	75	72	61	66	57
TTATCGGCAAAAATAC	alt_4037_RC	0	0	0	0	0	0	0	0	0	0
ACTAACGTGAGATCCA	alt_4037_RC	37	34	32	47	34	34	29	37	28	48
GGGAATACAGGAGATG	alt_2028_RC	4	7	8	8	4	6	8	9	6	2
GGGTCCCCCCCCATCA	alt_2028_RC	155	126	211	156	164	166	146	150	138	162
TCTGATCGCCGAGGTG	alt_2028_RC	23	24	26	24	26	35	21	23	20	20
TGATCAGCTTGTCAAA	alt_2028_RC	131	116	162	119	119	113	121	119	117	96
CGCCCTTTTCGGTGCC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TCCGTTCGAGCAGTAC	alt_2028_RC	20	24	30	26	16	17	16	22	30	20
GTTTCTATACTCGTAC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CGACTTTTAGAGTTCC	alt_2028_RC	5	6	9	2	2	4	8	8	8	6
ACGAGCATTTAATTCA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
ATATACTATCGTTTAC	alt_2028_RC	1	9	7	10	7	3	6	10	4	3
ACATTCCCGTCCCGTA	alt_2028_RC	5	31	4	5	31	4	26	4	43	5
GGGTCCCCCCCCCATC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CCTCCTAATCTTTGAG	alt_2028_RC	29	42	63	48	47	43	42	39	61	30
GACCGCCATGCTCAGC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TATCTGCCTAGATAGT	alt_2028_RC	29	29	34	39	28	28	33	30	22	26
GCCGCGTGAAGTTCAA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
ATCCTGACACATTCAC	alt_2028_RC	11	14	12	14	17	11	11	10	15	13
AAGGCTGGGCGATCAC	ref_2028_RC	81	23	73	60	29	69	26	66	30	54
TCATTCTGAGCAGAGG	alt_2028_RC	22	21	15	23	23	30	20	17	21	19
GAACTCGGCGGTTTTT	alt_2028_RC	101	66	111	92	77	74	81	88	81	69
TGGGCTAATCAGGCAT	alt_2028_RC	3	2	4	2	0	5	4	2	5	1
TTTAATTTAATCTCAT	alt_2028_RC	23	22	31	43	22	28	13	20	23	30
CGGCTTCCTTACTATC	alt_2028_RC	33	64	75	72	46	54	54	43	54	44
CGCAGTTTCTCAGATC	alt_2028_RC	37	60	64	45	52	45	45	52	54	52
GGTACAATTGAGAGCC	alt_2028_RC	41	17	39	37	24	24	31	34	23	38
TGCGTTCCCGCCCTGG	alt_2028_RC	14	14	23	26	15	22	21	13	27	20
GAGTTTAGCGCCCTAC	alt_2028_RC	27	22	35	29	32	31	30	22	32	23
TGTCTATATCGCTCTT	alt_2028_RC	5	3	1	3	0	6	2	2	2	5
AGCGGTCTCAAGTAAT	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TGTTCCAGTTGCCTTC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCTATTCGTTGC	ref_2028_RC	12	13	23	13	15	15	9	12	17	16
AAAAATCGGTCACATG	alt_2028_RC	5	10	6	12	5	5	6	8	8	8
GTCATATCGTAAACAT	alt_2028_RC	14	14	25	23	16	12	19	14	21	19
AAATGGGGGTTGCCGT	alt_2028_RC	46	39	65	61	51	49	38	55	35	33
GATTCTTAACTCTAGC	alt_2028_RC	44	47	55	50	42	38	42	46	63	38
TGCATAACTAAATTAT	alt_2028_RC	10	3	12	8	5	5	7	11	4	5
CGCCGCCCATGGAGTG	alt_2028_RC	49	55	48	62	45	53	54	47	37	44
ATTTCCACATAACTTG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
ATGTATCTCCAGGCCT	alt_2028_RC	168	140	205	179	137	151	148	163	144	180
ACCGAGCGGGGCTGGC	alt_2028_RC	81	110	123	113	110	100	93	86	117	80
CGACGGGGTTGGTAAA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
ATCGGAATAGGAAAAT	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
ATTCCGACCCGTTCAT	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
GATCTTAATTCGCTGT	alt_2028_RC	28	24	38	29	26	36	23	27	25	16
GGGGATATTTGGTTCA	alt_2028_RC	86	72	99	79	78	74	72	86	80	86
ACTCCCGGTTAACTTC	alt_2028_RC	17	42	15	20	39	15	52	10	60	13
CACCCTTGCTGACTCC	alt_2028_RC	11	18	22	18	11	15	17	10	15	16
TATTTATCACGGAGAA	alt_2028_RC	37	42	43	40	30	35	46	31	30	28
GACATTCAACCGTTCG	alt_2028_RC	17	14	17	27	6	17	17	9	23	19
GACACGATTGGATAAG	alt_2028_RC	29	17	27	24	31	14	32	20	22	19
GCAGCCAGGGCATCGC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TACCGCTGTAAATCCC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTTCATATTTTAAAAA	alt_2028_RC	12	15	14	12	8	18	12	9	8	6
CTTAGTCCAGTTACGG	alt_2028_RC	47	44	54	39	46	57	37	43	44	36
CCCCGGTTTCTCCCTG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CCATGATTTGATAGGT	alt_2028_RC	13	13	14	12	12	16	16	12	15	10
TAGGCAAGTGCGATGA	alt_2028_RC	39	33	28	43	29	35	26	32	38	20
AAATTGTTCCGCTCCC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
GTTGACTTGTTCCAGT	alt_2028_RC	37	39	54	46	40	44	55	44	51	47
TCTATGTGTGAATTCC	alt_2028_RC	13	9	11	14	12	9	14	18	5	6
CCTCTCTATAGTCGTG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CTTGAATTATCTAGGA	alt_2028_RC	21	39	41	30	30	30	40	29	39	42
GGCTGATAAGATCTCG	alt_2028_RC	307	344	367	322	324	301	367	256	359	231
CCTTGTAAGATAATCG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTGGGAAATTTTCGTG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTCAGGTTTCTTCCAT	alt_2028_RC	63	53	83	55	47	81	46	36	59	44
TCCTTCTCTCTCAGTA	alt_2028_RC	5	0	8	6	4	3	6	7	7	3
AAGACACCCCATGGCA	alt_2028_RC	24	18	46	37	34	20	25	29	29	17
ATTGCGGTACTGAACT	alt_2028_RC	17	28	36	40	33	26	37	28	36	28
GAAATTTTCATATTGG	alt_2028_RC	27	28	46	44	31	24	23	36	35	25
GTCAACGCCAGCGCCT	alt_2028_RC	7	4	11	9	5	4	6	9	4	3
CCAGGTGCAGAGCTAG	alt_2028_RC	4	4	1	1	3	1	1	1	3	1
TGAATCATAACCCAAG	alt_2028_RC	29	28	28	57	27	23	32	27	26	22
CGAAGTCTTATCTTTG	alt_2028_RC	62	46	63	38	46	52	55	57	67	52
AACGTGTACTTTTAGG	alt_2028_RC	5	5	2	3	5	5	6	2	2	2
GTAAATTGCCTCTTTG	alt_2028_RC	35	35	52	46	33	38	48	36	38	30
ACTCTTGCTAGTCATG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CTTGGGACGACCGGTC	alt_2028_RC	60	44	50	43	47	38	50	41	41	39
TTGTTAAAGGCCTAGA	alt_2028_RC	56	38	70	52	41	57	55	41	46	66
GTTCTGACCTGTAGGC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGCATTTATGTA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TCTTGAAATGGAAGGG	alt_2028_RC	101	67	112	104	97	99	53	96	93	110
AGTCAGGGTTCATCGA	alt_2028_RC	36	56	68	52	53	48	38	58	49	50
CTATCTCGGTGTGACT	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTAATTATTGGT	alt_2028_RC	30	21	24	26	21	23	23	20	23	19
TCGTGGATCATTATCC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
AGGCGCTCAGATCCTT	alt_2028_RC	43	54	67	66	55	68	66	76	58	67
TACTTTGTCACCCAAC	alt_2028_RC	38	59	55	46	55	43	53	54	65	54
AGTACCGGTCTTAAGA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
GGCTGGCCTCTGCGCG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TCCTGCGATGTACTCG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CAAGACAAGGTAATTC	alt_2028_RC	10	5	11	9	5	7	9	7	8	8
CTCCTCTTAAGTTTTT	alt_2028_RC	64	67	64	46	58	44	73	37	76	40
CAACGCCATTGGCGCC	alt_2028_RC	24	20	27	20	23	19	23	24	17	16
TATACTAGTATCTTGC	alt_2028_RC	54	56	70	49	60	54	54	38	72	36
CCCTCCGTAGACACTA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CATAGCTGTACGAGTA	alt_2028_RC	63	43	84	57	70	67	77	68	55	58
CAAATGTGGTGTTCTC	alt_2028_RC	21	25	22	18	25	19	21	15	18	15
GCTAGGTCAGCTGACT	alt_2028_RC	55	39	56	50	38	42	49	30	44	41
CGTCCTGACCCTAAGG	alt_2028_RC	79	84	111	99	108	75	87	79	97	76
GTCAGCTTCTAGAACA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CGGATCCACTGGGCGT	alt_2028_RC	28	27	23	23	34	18	21	14	19	25
TAAGCGAGTCGGGTTC	alt_2028_RC	23	32	30	27	22	22	35	21	32	14
TCATTCAAGGTTTTGA	alt_2028_RC	86	78	108	83	107	92	95	79	98	80
TGTTTTAATACGCTAC	alt_2028_RC	57	68	67	67	68	63	66	47	89	53
TTCCGCAGCCTCGGCG	alt_2028_RC	31	29	32	35	26	42	33	25	36	41
ATATGGGGGCTCGCCT	alt_2028_RC	5	1	8	2	4	3	3	4	12	2
GGCTCGCCTTAATCCA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGCTGATGCGGG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
GCTAACTCACCGATTG	alt_2028_RC	30	32	33	35	36	26	40	24	41	16
TTATGATGGCGACGCA	alt_2028_RC	4	1	11	6	6	7	4	5	2	1
TGCGTTATCAGGTCAC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTCATGGTACCGTCTC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTTCCACAGTTT	alt_2028_RC	12	17	7	12	11	14	7	9	13	8
GGAACGGTTCGTGTAG	alt_2028_RC	84	93	111	89	103	90	85	94	93	85
TTTTATCATTGTTGCG	alt_2028_RC	38	33	50	41	35	38	35	34	39	45
ACGAAGGTCACAGACA	alt_2028_RC	49	38	51	63	37	45	46	35	43	36
GCTATTTCTTTCTCAG	alt_2028_RC	16	9	20	9	8	19	17	12	17	7
CATTGCTTGGCGTGGC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
ACTACATTGAGCATCG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CTGGCGTCATGAACGT	alt_2028_RC	91	87	132	106	64	95	91	87	77	83
CGCTCCGCAAAGTTGC	alt_2028_RC	39	42	46	49	20	35	38	46	30	29
CGTCCTTTTGCCTCGA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TTTTACATTCTCACAA	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
ACCGGAGCGAGCGCTT	alt_2028_RC	84	86	101	78	80	99	73	90	72	70
ACTAAAAAGTCTTATC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TAGGTCTTCATTAGCG	alt_2028_RC	1	1	3	3	2	0	2	3	3	2
CGAGTACGTGGGCCTC	alt_2028_RC	31	20	51	36	31	28	34	40	34	31
TTGTTCAGCTCTGCAT	alt_2028_RC	24	38	47	29	26	37	37	26	33	21
TTCTTGCAATATCTAT	alt_2028_RC	10	11	13	16	13	19	21	18	14	11
ATGTATTCGGAGGGGG	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
GCAAGTGTGCCTTGGT	alt_2028_RC	14	10	10	14	9	10	9	14	15	5
GCGGGACTTTATTTCG	alt_2028_RC	8	20	11	19	11	23	17	19	7	17
TCCTGATGCGGTATCT	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
TGCAAACTATCATGTC	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
CCCGCCAATGAAAGTC	alt_2028_RC	1	6	1	2	6	3	6	0	7	0
TCGATGATCCAATCGT	alt_2028_RC	0	0	0	0	0	0	0	0	0	0
GTCGGCCTCTCCTTAG	alt_2028_RC	27	47	42	43	54	36	57	33	37	30
CCGGCGCATCTCCGGA	alt_2028_RC	229	181	263	231	196	210	224	209	212	201
TCTTCTTACCCTTTGT	alt_2028_RC	32	30	18	22	22	20	35	30	30	26
GGCGCAATTTTATGTT	ref_5083_fdr	48	42	73	45	47	54	52	55	62	33
GTGAATTGCTTGTCGG	ref_5083_fdr	64	42	54	45	52	50	50	43	55	64
AGGTAAAAAAGTTTAA	alt_5083_fdr	118	90	138	142	92	116	102	93	116	103
TAACGACTACCGACAT	ref_5083_fdr	24	19	29	14	15	22	26	15	22	14
TTTCGTATTACACGTA	ref_5083_fdr	25	26	18	16	38	14	46	19	32	17
CTGGCACTATGACATC	ref_5083_fdr	32	28	21	26	27	29	32	29	25	22
GGCTGTGCGCAACTAG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CATGTGCGTCAATATT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTAACAGTTCGT	ref_5083_fdr	18	15	23	7	19	17	27	20	25	13
TAGGCGGGTTTGTTTG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TATCACGTCCATTTAC	ref_5083_fdr	57	53	70	59	51	44	56	51	51	73
TGTACTCAGTGAAGCG	ref_5083_fdr	5	2	4	2	2	1	4	5	3	1
ATGCTAGATAATCACT	ref_5083_fdr	28	27	40	23	20	31	22	22	22	25
AGTTCTTTATCTGTAA	ref_5083_fdr	35	43	46	50	41	34	34	31	43	37
TTGAATTTGCCGCAAA	ref_5083_fdr	40	26	31	28	36	31	33	35	27	23
TGCACTGGTTAGGGAT	ref_5083_fdr	14	25	14	8	10	11	11	10	19	18
GCTACTTGATGTTCCT	ref_5083_fdr	22	14	19	38	33	12	34	25	23	23
GCCCCATCGGGTAAAT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ACGTGTCGGAGCACTA	ref_5083_fdr	11	9	5	3	4	9	7	12	10	6
CCATGCATCTGACCTT	ref_5083_fdr	57	60	79	72	67	55	63	60	55	58
GGATTGATGTTCTTCA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTACCCGATTTCCCTT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ACTAGTTTTTGTGCCT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCTGTTGTGCCGC	ref_5083_fdr	44	49	64	56	55	63	56	49	47	46
AGTAGGTAATTCCGAA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ACGTATTGATCGGACA	ref_5083_fdr	14	10	12	10	2	9	16	10	9	7
TACTTTGGCCATGGGT	ref_5083_fdr	27	34	32	24	43	24	39	19	28	29
TGAGACATGTCAGAAG	ref_5083_fdr	14	17	20	19	14	14	12	20	14	8
ACGGCCATACCTTATG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTTATCAACAAA	ref_5083_fdr	6	4	12	4	7	9	4	6	3	6
CAAGGATAGCCCACCA	ref_5083_fdr	27	17	25	32	20	23	18	23	21	19
TAGCCCTTGCTTCAAT	ref_5083_fdr	74	64	67	64	67	60	66	51	67	62
TAGCTGGTGTAAATTG	ref_5083_fdr	35	27	30	21	35	37	32	18	33	33
ATTTCTCGGCGCTATA	ref_5083_fdr	0	0	1	0	0	1	0	0	0	0
TTAAGCCTAGCTATAC	ref_5083_fdr	23	50	53	48	45	33	49	37	42	33
ATGCCTTAAATGAATC	ref_5083_fdr	9	4	17	10	9	10	10	8	8	6
GAAGCATTGACTACGC	ref_5083_fdr	88	80	127	96	91	110	88	92	104	92
GTTGTTGGGCAAACGG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCTGGATTTGTAG	ref_5083_fdr	11	5	7	10	9	17	7	16	5	7
GCTTCCCTCACTTCTC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGATGTTTTTGGA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TGTCACGAGCACAGTA	ref_5083_fdr	36	43	59	57	44	42	47	44	49	48
GGTCGTAATGCAGCGC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
AGATCTGATTGTCTGG	ref_5083_fdr	26	23	26	30	18	24	30	23	32	28
TGGAATCCATACTTCC	ref_5083_fdr	6	4	6	2	4	5	5	6	2	9
GCATCGTGCTACTTTA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCTACCTGGCACGGTT	ref_5083_fdr	54	66	66	79	58	65	59	54	52	65
ATCAACAACTCATCGC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGCTTTGGACGG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CCGGATATATAGTTGT	ref_5083_fdr	51	39	45	52	41	36	30	37	37	40
GGCGACTGTGGAGCCT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTGAATGCGGTAC	ref_5083_fdr	5	9	5	10	10	8	8	12	4	10
TTTTTTACGTCGTTTG	ref_5083_fdr	139	132	180	129	103	111	134	119	112	83
TTCTAGTAGAACCAAT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTCAAGGGCTCC	ref_5083_fdr	24	26	44	23	26	29	19	31	20	19
ACGTTCTGTTAAAGGT	ref_5083_fdr	19	18	34	18	24	36	31	21	26	24
CCCTCAAGAAATTTAA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCCCCTGGAGGCC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TAACATACGGATACTC	ref_5083_fdr	41	38	46	45	47	36	56	30	38	36
AATTCGACCTTTTAGG	ref_5083_fdr	15	6	15	6	7	15	9	2	6	9
TTGATATACGAACGCC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTTACGCACCTGT	ref_5083_fdr	50	58	56	54	54	43	75	51	70	39
CTATTCGCTGAACGGT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTCTAGGTTTTTG	ref_5083_fdr	59	68	81	74	63	59	61	56	78	61
CCTTAGAGGTTTACCT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GATCAGAGTAGTACGG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTGACTCTAACTC	ref_5083_fdr	6	8	4	3	6	7	2	1	6	5
AGGATAGCGCACTTCT	ref_5083_fdr	48	53	67	46	45	44	50	65	35	36
TCGTGGGCCCGTTTTT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCCCAACGGTTCCGTT	ref_5083_fdr	24	30	28	20	33	12	32	22	36	28
CTGCATTCTCTGCACA	ref_5083_fdr	6	11	15	10	10	4	9	15	4	12
GCCTTCTCCGTGACTG	ref_5083_fdr	8	9	9	6	8	8	7	8	8	7
ACGAAGGTCACTATTC	ref_5083_fdr	6	13	20	16	19	18	13	9	17	22
AGTTGTGCAGAATCGT	ref_5083_fdr	14	14	18	21	19	12	16	15	28	7
GCTGTGCCTATTCTCA	ref_5083_fdr	29	43	42	38	42	39	33	35	31	45
TTATTCATAATTCTAT	ref_5083_fdr	15	8	10	5	4	7	11	5	10	4
TTGTCGTTTCGACATA	ref_5083_fdr	24	34	63	36	31	29	24	29	47	22
ACAAGACTTCGGTGCC	ref_5083_fdr	6	7	9	9	9	4	2	6	7	6
CGGGATCAATGCAACC	ref_5083_fdr	46	31	68	45	39	49	27	47	48	44
CAGCTCTTCGGATTGT	ref_5083_fdr	3	10	9	15	6	6	5	6	7	3
TCCTTCAACCAAAGTT	ref_5083_fdr	59	50	73	71	60	50	39	37	66	52
GCCAAGCTGCGCCCTG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCCCCTTTGGCTT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGATACATATCTATCC	ref_5083_fdr	42	31	52	43	35	37	49	49	36	42
TTTTGTATTTCAATGG	ref_5083_fdr	12	9	21	13	13	19	18	11	11	21
TGCATATTGGTCGGGA	ref_5083_fdr	15	13	11	6	11	14	19	12	16	5
TAGGGGTATTACTCAG	ref_5083_fdr	23	19	31	20	20	25	15	27	26	16
GACACCAGCAAACAGT	ref_5083_fdr	0	2	1	1	3	0	0	0	2	0
TCCTGGCTCACGTCCT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTTACGGAACCCA	ref_5083_fdr	60	47	60	41	43	50	67	26	47	38
GCCTTTTGCATTCGGC	ref_5083_fdr	2	2	0	0	1	1	1	2	0	0
GTTGAATAGTTTTGGG	ref_5083_fdr	15	7	17	13	16	17	12	10	12	12
CCTGTAGTTAACACTC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CCAACTTTAATGGTGA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTGGCGGCCTTCG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAGGTTCCTTTCG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TATAAGGTTAGGGGCA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCGATTTTTTAA	ref_5083_fdr	8	6	15	11	9	16	11	14	15	10
ACTGTGATTACGGGCT	ref_5083_fdr	27	23	41	37	38	47	34	35	53	43
CTTTCGTGTCGTAGAG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCGAAGTGTCGCACGA	ref_5083_fdr	145	116	149	127	95	140	109	94	126	98
AACTGGGGGGTAGACC	ref_5083_fdr	3	3	13	5	4	7	3	3	7	5
CTCGATCGCGTCATTG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
AGATTCTTTCGTAGTT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCTTACTCTGACCCGT	ref_5083_fdr	63	41	55	59	71	47	54	62	54	55
GTACTGCACGCAGGGG	ref_5083_fdr	23	23	21	18	11	32	15	22	17	22
TAAACATACCTCTTGT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GATCTGCCTCGTACTG	ref_5083_fdr	12	15	24	27	19	20	14	20	9	9
GGTTTGTGAGTTTTAT	ref_5083_fdr	15	6	6	4	3	6	11	11	9	11
ATCGCTCTGCCGGTGT	alt_5083_fdr	41	38	61	56	33	55	32	47	55	37
CCCCCGTCTAGAACAG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
AGGAAGGCTTCCATAG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTACTAGATAGTACGC	ref_5083_fdr	30	25	29	26	32	19	17	17	29	22
AGTGTTTAATAGTTTG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGGTTCCCGCTTA	ref_5083_fdr	24	15	14	19	12	16	18	23	16	22
GGCAGGATGGCGAAAA	ref_5083_fdr	1	2	0	0	0	1	0	2	2	0
CGACTATGCCACACCG	ref_5083_fdr	36	22	40	38	29	38	31	26	23	33
GTTTCAGCTCCGTGAT	ref_5083_fdr	82	55	119	85	80	73	67	69	86	72
AGCGTTTTACTTGGGT	ref_5083_fdr	70	70	85	87	76	70	67	91	61	59
TGACTCTATCCTTACG	ref_5083_fdr	11	5	14	10	8	5	3	6	7	6
AAGATCGATTATTCAG	ref_5083_fdr	3	3	8	3	6	7	5	7	4	5
GGTCTTTACGTTTAAT	ref_5083_fdr	3	5	10	6	0	8	3	1	9	2
ATATATGGTAGCGTGG	ref_5083_fdr	7	4	10	5	3	7	3	9	6	6
GGCTGGTACGGACTTG	ref_5083_fdr	26	9	36	23	15	22	11	14	32	14
CACGAGCGCTTGTGAT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TATCTTTTCGTTAGCT	ref_5083_fdr	70	51	68	57	37	54	51	64	69	49
TCGATTTCTGTCTGAA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGAGAATGGTGTG	ref_5083_fdr	0	0	0	0	3	0	0	1	1	1
GTGCTGGACGTTCCAG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CGTGGCCATACGTTAT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CATCTACGGGGCGCTG	ref_5083_fdr	51	59	64	63	66	50	54	62	58	40
CTGTATTCGACAATTG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTCTTTATCTACT	ref_5083_fdr	27	23	42	25	30	19	25	20	15	17
TGCGATCTTTGAATCA	ref_5083_fdr	17	10	10	12	11	10	13	20	8	13
TACTCGGCCATCTTTA	ref_5083_fdr	23	19	36	34	27	36	20	28	13	34
TAACTGAGACTGAATC	ref_5083_fdr	36	27	35	49	33	39	30	36	37	48
CTGTCGATTTTCGGGC	ref_5083_fdr	42	23	48	28	30	26	33	31	24	30
TGCATGACTGCCACAG	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTCGATTCAAGGTGAA	ref_5083_fdr	12	13	21	9	10	17	22	12	7	16
TAGAATGCTCTGCTGA	ref_5083_fdr	44	34	30	38	21	47	29	22	34	34
TAGAGTGTGTCCGGTC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CATCCTATCGTCCCCA	ref_5083_fdr	17	18	30	26	20	22	17	17	23	13
GCCCGCCACAGATTAA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
ACCTCGGAACTTTTTT	ref_5083_fdr	50	35	48	50	37	34	42	39	32	42
GCGCTGCGATATATTT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCATTAGTAATGC	ref_5083_fdr	16	7	14	8	10	9	11	8	9	11
GCTCAAGAAATTGATA	ref_5083_fdr	100	98	89	82	88	83	121	74	86	73
GCCCAATTGCGTGCGT	ref_5083_fdr	78	82	76	100	75	63	62	55	77	75
GGGTGTCAGTGCATTT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CTATGTGAAAGTTCTG	ref_5083_fdr	16	17	24	26	14	18	15	13	19	17
TCGCCATTCGTATAGT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCGGCTTTATTTC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTATAGTACGCGC	ref_5083_fdr	31	15	18	19	28	17	29	24	13	12
AACTGGTAACACGATT	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTAGGCTTAATT	ref_5083_fdr	12	8	11	13	13	5	10	7	8	9
AAGGAAGTCATATTTT	ref_5083_fdr	35	27	42	37	23	39	33	40	34	34
TGGTCTCTAGCATGCG	ref_5083_fdr	9	4	14	12	6	6	9	5	10	6
CGATCCCATCCTTGGA	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCCGAAGATGGCCTTA	ref_5083_fdr	11	19	12	9	13	11	19	15	10	8
GAATAGATGCATCATC	ref_5083_fdr	2	2	3	3	3	5	6	5	7	1
TAGCGCTATCCTAGTC	ref_5083_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGCCCAGGCCTCT	ref_5083_fdr	163	181	201	182	151	177	166	138	178	158
CAATCCTTTTGGTTGC	ref_5083_fdr	16	19	17	17	16	9	20	14	26	12
ACCTATATTTTCTCCA	ref_5083_fdr	1	3	4	3	1	4	4	4	2	2
GTTAAGTCATGTCCCA	ref_5083_fdr	21	12	16	17	20	20	16	23	15	17
AGTTTCCAGGTCCCTG	ref_5083_fdr	42	40	48	41	40	46	51	37	32	43
GGCTTCGCTGTTTAGG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGACATGTTAATTCCT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGAGGTGCGTTAACGT	ref_1269_upstream	6	12	2	4	14	4	4	3	14	2
CGCCAGCTTTTTTAGT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGCATTAGCACAT	ref_1269_upstream	13	25	7	14	18	15	20	11	18	11
CTTGTTCGTTTTTCGC	ref_1269_upstream	26	34	27	28	29	18	36	14	31	17
AAGACAAGTGGATTTT	ref_1269_upstream	31	66	50	47	74	47	88	42	57	42
ACCTGTTCTAGAACAG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTGTACTAAGGTAGAC	ref_1269_upstream	73	131	77	94	162	84	150	75	147	71
AACTCTGGGCCAAGAC	ref_1269_upstream	38	34	34	21	31	16	40	22	33	19
TCATTGCTCCCGGTTT	ref_1269_upstream	48	86	49	53	91	50	88	43	82	38
TAGTGACTGATCGGGA	ref_1269_upstream	30	26	21	17	28	12	20	14	20	24
TAACTCTGGGCTCGCC	ref_1269_upstream	18	24	27	25	23	18	40	21	35	20
CTCCAGCGGAATCTGT	ref_1269_upstream	44	80	57	35	87	57	79	49	105	41
CGGTCAGTCCGAGGAA	ref_1269_upstream	2	5	1	2	4	1	0	4	3	1
ACATCTGCGTAGTTAC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCCATTCAATCCT	ref_1269_upstream	8	26	22	24	35	19	38	27	27	12
GGTATTGTAGGGTTTT	ref_1269_upstream	6	1	0	2	3	3	2	3	7	3
GGTGAATAGTCGCCGT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTTTATCATAGT	ref_1269_upstream	20	35	20	11	22	13	30	15	29	8
TCTTTTTAGCGTCAGC	ref_1269_upstream	70	130	100	72	126	77	118	81	124	57
TTCAAGCGGCTTACGT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTATCCGGTTCGC	ref_1269_upstream	10	19	27	12	13	17	13	8	17	13
TTCTGTTTCTCCAGGT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCCAAAACGACCTAGG	ref_1269_upstream	1	4	3	3	7	4	9	2	5	3
TGTCGCGAATTTGCGT	ref_1269_upstream	40	85	56	53	80	59	97	51	107	45
GTATACATGGCTTTGC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTCGATCACCGC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGGCAAAGTTCCT	ref_1269_upstream	126	201	184	134	237	144	219	96	185	137
GTCTTTGGCCACTGTT	ref_1269_upstream	19	8	11	14	15	9	16	14	20	9
AGTAATGCGTCGTGGC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATTGTTACGCTT	ref_1269_upstream	0	0	1	0	3	0	0	3	2	2
AGCCTCAACAATAAGG	ref_1269_upstream	8	18	9	7	8	7	24	10	10	8
TATCCTAGGCGTGCCA	ref_1269_upstream	13	21	20	14	18	11	26	12	18	8
GGTGGACTGAGCGGTT	ref_1269_upstream	27	38	22	21	40	23	49	17	40	15
AGTCTCCAAGCACTCC	ref_1269_upstream	5	13	9	3	14	6	32	8	32	7
ATTTTAACGCCCCCAT	ref_1269_upstream	67	62	71	61	100	72	78	66	80	58
CAGTCGACGGTTAACG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCGTTTTCCTGC	ref_1269_upstream	15	25	25	17	14	7	22	17	19	14
GACCGGCTCACCTCGT	ref_1269_upstream	1	2	3	4	7	2	13	3	2	3
GGTTCTCGGTTTACAA	ref_1269_upstream	19	27	11	9	25	23	17	6	32	11
TGCACAATATCCCATG	ref_1269_upstream	1	6	3	2	3	2	2	3	5	3
TGTTCTCCCATGTTTA	ref_1269_upstream	7	22	5	15	9	5	15	22	17	13
TCGTAAGGAAGTCTCC	ref_1269_upstream	7	17	16	12	23	13	25	11	26	7
TCTAAGGCGGGGAGAT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCGCAGTTCCCGACTT	ref_1269_upstream	30	55	36	41	63	29	57	32	62	34
AGCTGTAGGCGGTTAG	ref_1269_upstream	87	94	82	63	124	85	118	64	131	72
GTTCCAAGCATGGCAA	ref_1269_upstream	30	30	25	20	26	18	39	16	42	12
TTTACACTGACACATT	ref_1269_upstream	39	52	38	39	60	31	49	30	54	33
CCAGCTCGTGCTTGGC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGACGGCTACCTT	ref_1269_upstream	18	14	16	11	17	17	17	12	18	9
CCGCTGGGGGATTTGC	ref_1269_upstream	7	35	10	9	27	10	29	10	40	7
CTGTCTACATTCCTTT	ref_1269_upstream	2	11	8	5	18	2	15	3	11	10
GCAGTAACTTTTCTAC	ref_1269_upstream	15	17	10	9	17	10	19	6	17	7
CTTAATGGGTGTTAGG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TGATACGGATCACTAT	ref_1269_upstream	32	41	36	38	38	31	66	21	36	35
TTTTGCGCTGCTTCTT	ref_1269_upstream	28	36	14	15	21	15	31	13	24	17
GGCGTCCTATGTTTTA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCACCTGGGACAG	ref_1269_upstream	8	11	9	5	12	13	11	4	9	2
TATATTCTTGAATTTG	ref_1269_upstream	26	15	24	22	27	10	33	21	37	18
GTTTTCATCGGTCTTT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCTCGCTCCGCC	ref_1269_upstream	4	8	4	6	12	2	8	1	9	8
TTCTCTGTTTTTCGGG	ref_1269_upstream	9	2	4	2	10	4	7	5	6	1
GTTCCGTTTGTGCATT	ref_1269_upstream	23	55	31	23	41	23	63	42	45	34
GGATTCCGGATCGGGT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
AAACCCTTTTTATGGA	ref_1269_upstream	5	7	6	3	0	2	3	4	5	0
AGTACTTTTGGTGCTA	ref_1269_upstream	11	16	5	11	10	10	11	13	9	10
AAGGACTTCCGCGTTT	ref_1269_upstream	39	52	51	29	49	41	53	32	65	26
GAATGGGGCCGATTCA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTTGTAAGAATTC	ref_1269_upstream	31	59	47	50	55	24	47	32	59	32
TTTGACCCTATATTTG	ref_1269_upstream	41	55	53	47	55	48	51	47	61	32
TCTACCGTGATTCAGC	ref_1269_upstream	16	35	17	12	20	17	21	13	25	17
ATATTGCCCGTTTCGC	ref_1269_upstream	98	113	105	91	134	87	143	85	151	83
TTCTGTTTCGCCAGGT	ref_1269_upstream	68	86	62	45	91	50	73	71	107	54
CTCATCTGCCCCTGTT	ref_1269_upstream	26	27	26	22	27	19	24	17	27	22
TCTCCCGGGCAAGTTG	ref_1269_upstream	9	11	15	9	15	6	20	13	25	14
CTGGCAGTTGTCTATA	ref_1269_upstream	10	16	13	9	16	7	11	12	12	4
CCGTGTATTTAGGCAT	ref_1269_upstream	10	29	20	13	35	16	28	12	24	13
GACAAGGGCACCATTA	ref_1269_upstream	4	1	1	2	3	0	2	0	3	2
GCTTTTCCCGACTACT	ref_1269_upstream	97	165	154	94	172	97	192	101	208	77
TCAATCCGCCCGCGTC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCCTTTGTTTACA	ref_1269_upstream	0	2	2	1	3	1	2	1	0	1
GACCCGTTTCCACCTG	ref_1269_upstream	7	10	5	7	18	11	19	3	11	3
TTGTGACAGGCGTGCA	ref_1269_upstream	8	9	9	7	17	7	9	6	14	8
CCACAGGTAATTTCCG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GATAACATTCTCCCAG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCTGCCGGGTGAA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTACGCCTTAACGGCC	ref_1269_upstream	8	10	12	5	7	7	11	6	8	6
ATCCAGCTATCAATGC	ref_1269_upstream	29	53	54	28	62	30	55	31	59	29
TAGACATTTGCTTGCG	ref_1269_upstream	15	27	18	13	15	21	36	12	24	12
TGTGTCGGGTAGTGAC	ref_1269_upstream	1	7	2	4	13	2	6	3	3	2
TTCGCCGGGTTTCGCC	ref_1269_upstream	13	22	24	23	29	27	28	19	27	16
CGGGTCGAACGCTACC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCTGTAGGTTCCC	ref_1269_upstream	23	31	16	23	35	22	28	21	27	16
GGCTTGCTCTCGTCTG	ref_1269_upstream	1	3	7	4	6	3	4	2	1	0
CGGCCGTTACGCTTAG	ref_1269_upstream	9	30	15	9	26	16	20	13	19	13
TTCCTTTTTTGACATG	ref_1269_upstream	11	13	9	13	10	10	7	8	13	6
ACTGCGTTACCTGTCG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGTGTAATATGT	ref_1269_upstream	18	31	17	19	25	16	15	12	16	13
GGTTTGGTCACACTGT	ref_1269_upstream	16	7	13	10	12	17	16	10	18	13
ACCGTATATAGTGAAG	ref_1269_upstream	36	58	62	43	65	37	64	48	63	28
ACTTAAATTCTTTACG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGCTACTATTAAT	ref_1269_upstream	21	22	18	10	20	10	23	15	27	14
TCTTTTTAGAGTCAGC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCCCCCTGGTCCA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GATCTGCGTTTTAGGC	ref_1269_upstream	13	15	15	12	13	10	17	4	13	12
TTACCGTCGCTTCGAG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTTTAGATAGATC	ref_1269_upstream	25	35	21	35	38	35	35	20	39	18
CGGCTCCCGTTCTTTA	ref_1269_upstream	5	8	4	12	2	6	1	5	3	0
GCTCTAATCAGCAGGA	ref_1269_upstream	4	6	4	5	3	8	9	1	8	2
TAGGTGCCGGTGTTGA	ref_1269_upstream	175	227	201	227	281	168	251	159	243	144
CTCGTGAATTTCCTTG	ref_1269_upstream	3	6	2	10	2	3	4	3	7	3
GCTTAAGAGGATTCCC	ref_1269_upstream	19	46	17	24	43	15	44	20	28	26
TCAACCGGTAACGATT	ref_1269_upstream	19	49	21	19	42	14	51	17	61	12
TTCTGAGAGTGATACC	ref_1269_upstream	3	14	3	5	15	4	14	8	16	3
AAGCCCTAGCCTATAC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGCCCATGTACCA	ref_1269_upstream	28	37	29	25	34	29	41	23	61	14
CTCAGGTACTTGCACC	ref_1269_upstream	3	2	3	1	3	1	5	6	1	0
GATTGAGTGTCTCAGC	ref_1269_upstream	5	13	6	7	14	9	9	6	14	6
GAGGTGTACTGGCATT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTTGCGAACAGC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGGTTCTTTACGT	ref_1269_upstream	8	7	7	8	12	10	13	8	19	8
TCCTCTCGGACGTGAT	ref_1269_upstream	93	125	101	79	135	92	123	86	118	63
CTTCGTCATTTTGAGC	ref_1269_upstream	67	90	66	47	89	71	85	49	112	42
TTATTCTCTTTACTTT	ref_1269_upstream	1	5	3	4	5	5	8	1	6	3
ACTTCACGGCTTCACC	ref_1269_upstream	44	75	65	50	67	38	79	42	68	34
TACGGTCAGGATTTTT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CAAACTCACATGCTTA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATTCTGGATTTC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
AGCATCAACAGTTCGC	ref_1269_upstream	5	6	4	7	6	4	8	6	13	5
CCGCCTTTGGGAAAAA	ref_1269_upstream	23	28	24	15	31	27	35	16	32	19
GCTCTTTGATATCTGT	ref_1269_upstream	5	4	10	8	9	7	14	3	8	4
CCATACCTTGCACGGG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGACGACTTTCTC	ref_1269_upstream	1	7	4	2	10	4	11	5	1	4
GAATCTTCTCGGGCGG	ref_1269_upstream	12	5	19	13	17	10	20	5	17	16
TAGGTGGATGGTACTG	ref_1269_upstream	0	0	0	0	0	0	0	1	0	0
CAATACGCAATGCAGG	ref_1269_upstream	40	63	69	43	73	48	66	35	64	32
CGTATAGCTTGAGGTC	ref_1269_upstream	88	128	89	54	123	78	109	82	127	73
TAACCAACAGTACCGT	ref_1269_upstream	31	62	40	33	66	32	55	34	60	40
CTCGACTCCCGAGCTT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GGTAAATAGTCGCCGT	ref_1269_upstream	289	329	279	285	339	215	337	230	349	253
CTTGGGAGAGTTCTCC	ref_1269_upstream	21	29	27	19	24	15	27	24	40	17
CGCCTAAGGCGGGTGT	ref_1269_upstream	69	108	70	55	91	62	91	55	120	64
GGAATGCGAGGCAGCC	ref_1269_upstream	2	7	3	5	2	5	6	6	6	5
TTTAGTCTAGTGCAGT	ref_1269_upstream	55	114	84	69	111	61	106	79	119	66
AAACTTGCCGGAAACC	ref_1269_upstream	2	1	5	2	6	3	3	3	4	2
CCTTAGTACAAAACTG	ref_1269_upstream	26	48	25	27	52	26	57	24	38	23
AACATCTTTACCCGTA	ref_1269_upstream	3	17	7	9	12	4	14	12	12	8
TTACACTTTGTTCGCC	ref_1269_upstream	44	94	63	38	78	58	102	45	117	51
GGCATTGTTACCCCCA	ref_1269_upstream	4	13	14	10	13	10	17	8	17	6
CACTTATACTGCTAGG	ref_1269_upstream	8	5	2	3	7	2	4	1	5	5
GGCAAATTTATGTGGA	ref_1269_upstream	2	3	4	5	2	0	4	0	6	3
TGCCTGGCGTCCTTTT	ref_1269_upstream	39	63	33	33	72	49	66	41	74	38
AGAACCTTAAGCGTTT	ref_1269_upstream	34	58	36	33	38	33	55	35	58	29
CAGGCCATTTGTCCAG	ref_1269_upstream	18	31	22	20	30	16	31	18	46	12
TAAGTGATTCCTGAAC	ref_1269_upstream	33	63	32	34	40	31	54	27	87	31
GAGCAGGGGATTTCCC	ref_1269_upstream	1	6	4	2	3	4	5	2	7	5
TCGCTTCCAGGGTCTC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
AACGTTATGTTATCTA	ref_1269_upstream	1	9	3	1	7	6	6	5	10	3
CTAACGATTGTTAATG	ref_1269_upstream	5	10	7	6	8	4	10	4	14	7
GTCTCGTTCAAACTCT	ref_1269_upstream	8	4	6	7	6	8	11	7	6	3
TCTGGGTTGCAGTTCA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GTCAGCAGTGTCAGCT	ref_1269_upstream	13	22	25	14	34	8	23	17	42	21
TTGTATGTTGATGTGA	ref_1269_upstream	30	54	37	28	43	31	29	25	52	25
AACACCATGTGCTGTC	ref_1269_upstream	66	101	62	48	99	34	116	49	135	37
ACGTCCCCTTTCAGAA	ref_1269_upstream	26	57	30	27	51	33	61	19	46	23
CAGCATTCCGACACTA	ref_1269_upstream	2	2	7	1	4	3	3	0	6	2
GCACGAGTGGGCACTC	ref_1269_upstream	12	18	15	13	16	15	22	9	11	13
CAGGTTTTGGCTGGTA	ref_1269_upstream	13	20	12	14	14	13	10	10	11	10
GGGCGTGGCTAACACC	ref_1269_upstream	27	29	26	19	25	8	34	26	43	25
ATGCCTCTCCCTTTAC	ref_1269_upstream	13	35	23	18	56	14	44	17	63	27
TCATGACCTCGGTTCT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTATGCGAACTTA	ref_1269_upstream	10	17	5	2	24	5	25	13	18	3
TGCGGGTCCCTTCTTC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
AAAACAGATGACCGCT	ref_1269_upstream	8	4	4	2	8	1	7	10	13	6
CAAGTTTGGCTTAACG	ref_1269_upstream	12	19	18	12	14	9	21	5	13	12
AATCGATCTTGATCGG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTACGGTAAGCCA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCTCATTTGCCTATCA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTTACAAATCCTGGTT	ref_1269_upstream	47	67	53	52	59	46	74	59	76	37
CCATTATAGTGGGGCC	ref_1269_upstream	4	12	15	5	15	3	14	4	4	6
GCCCTGCAGTACGTAG	ref_1269_upstream	15	39	20	16	26	13	26	15	26	15
CGTGATGCCCTGATAC	ref_1269_upstream	7	17	14	10	13	12	23	11	11	6
TCACCGAAATCTTCGA	ref_1269_upstream	62	78	66	65	76	53	69	37	108	40
CGTAGGTATATCACTC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTAAGATCGGAGA	ref_1269_upstream	57	96	74	65	100	79	107	60	83	61
CCAGGTTACACCGATT	ref_1269_upstream	13	13	16	17	21	16	13	8	20	8
TTCCATGCCGGTCCGG	ref_1269_upstream	51	67	62	56	54	46	74	38	76	36
ATATAACCACGCCAAG	ref_1269_upstream	37	40	46	24	41	29	44	24	46	34
CCATTCGAACCTGGTC	ref_1269_upstream	1	14	7	8	12	5	12	8	17	6
ATATACCATAGCCGGG	ref_1269_upstream	60	95	96	76	93	67	97	61	100	48
CCACATAGGGACTGGA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
AAACGCTACAAATTTA	ref_1269_upstream	4	4	6	9	9	4	13	6	6	3
CGGGCCGCTCAATCAA	ref_1269_upstream	3	15	3	3	14	1	12	2	8	0
AGTGAAGTCCAGGTGG	ref_1269_upstream	3	0	0	2	0	2	0	0	2	0
GTGGTTAAAGGGGTGG	ref_1269_upstream	48	66	50	48	75	46	78	36	67	48
TCCTCGTGGAGCCGCC	ref_1269_upstream	4	21	9	6	16	11	12	8	16	8
AGATGCCCACTGTCTC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CGGATTGCACTAAGGC	ref_1269_upstream	5	9	9	4	6	1	6	4	15	5
AGGCCGAGTACTCAGT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCCACGCTGTGA	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTTCACTGCCTCG	ref_1269_upstream	23	34	21	22	36	21	38	21	28	26
GACTTTCGTACGTACT	ref_1269_upstream	3	4	5	7	6	1	9	4	3	5
TGCCTAGCCCATCATG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CAGCAATGCTTCCTTC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTTGCGTGCTACA	ref_1269_upstream	7	16	14	8	24	7	16	7	17	10
TTGTACCTTGCATTGC	ref_1269_upstream	6	7	13	7	9	7	8	6	18	7
ACCTCTTGTTTAGGCC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAAATTGAAGACC	ref_1269_upstream	32	67	27	21	48	36	75	33	63	30
GATGTAGTGTATATAG	ref_1269_upstream	7	12	7	7	22	9	11	5	13	4
GGGAGATCCCCATTAC	ref_1269_upstream	25	46	41	41	55	33	47	29	40	16
TTTGGTTTTCATTTAA	ref_1269_upstream	23	22	28	28	27	18	32	23	38	28
CTCGGTATATGGACTA	ref_1269_upstream	102	142	131	108	144	103	169	99	181	107
TTACAGCATTGTACTC	ref_1269_upstream	8	3	5	1	6	6	9	6	10	3
CCCCCCCTTTCGTAAA	ref_1269_upstream	15	36	15	20	27	16	39	20	37	10
TCTGTGCCTATGAACG	ref_1269_upstream	18	54	32	35	35	22	52	23	42	23
CGTTTTGAGTCTGTGA	ref_1269_upstream	2	7	10	2	5	8	11	5	15	3
GGAAAGGCCTAAATCG	ref_1269_upstream	55	68	72	53	79	45	80	63	77	39
GCTGCACTTACACCCT	ref_1269_upstream	28	42	26	17	37	17	34	28	34	31
TACCCGCCCTGGGCCC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCCTGGCGGGGTT	ref_1269_upstream	45	106	61	63	82	62	90	53	101	50
ACTATTCAAGGCGTTT	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCTAAATAATATC	ref_1269_upstream	2	3	4	0	6	2	3	0	8	4
ACTTCTGCGTAGTTAC	ref_1269_upstream	104	141	94	94	149	87	163	78	114	78
TTACAAATTTAACCCT	ref_1269_upstream	27	61	42	36	39	19	34	30	43	37
GCCCGGTCAGACCCTT	ref_1269_upstream	7	21	15	9	31	8	17	6	24	3
TCCGCTAGAGTTAACC	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTTGGGTATTCCG	ref_1269_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGCCGCTCGACTA	alt_5748_new	16	35	18	22	26	15	39	16	23	13
CAGCCCCACATGCCAG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TTTTAGACCGGTTGAC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AGCAACTTCCGTCACT	alt_5748_new	0	4	1	5	2	0	3	4	7	2
TATTAGGTTGTACACG	alt_5748_new	2	7	2	4	11	3	11	3	12	1
TCGTAACCTTCTTTGC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TTTGGCACACCATATT	alt_5748_new	2	1	1	2	4	0	0	3	5	1
TCATCGCCAGAAGTGG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TGTCCGGACGATAGGT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AATATCTGGGTCCCCA	alt_5748_new	17	33	24	18	37	9	49	6	41	10
GGAGTTATCGTATGGA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CACTTAAAGAATAATC	alt_5748_new	27	33	18	11	54	15	44	22	52	18
TCCAGAGAATTACTGT	alt_5748_new	18	24	15	15	19	15	34	9	26	7
AGCTTTATCATTGCCC	ref_5748_new	76	320	127	89	281	83	310	78	297	93
GGCCATGCGGTCTAGC	alt_5748_new	12	42	23	15	37	22	51	14	47	13
TAGCCCGGGAGCATAC	alt_5748_new	14	26	19	16	37	20	41	8	28	11
ACGATTATGCACGCTG	alt_5748_new	6	16	8	5	16	10	19	9	19	5
TATTACCTAACCTGTG	alt_5748_new	7	13	6	6	10	4	15	4	15	2
GTCTTCCTCAACCTAT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GGGGTATGGCGAGTCG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AAATAACTTAGCGGCC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CTTCTACGGCTCTTAT	alt_5748_new	12	28	11	7	26	7	25	7	16	8
TAATTTTTATGCGTAC	alt_5748_new	22	41	21	27	43	17	53	15	40	16
TAATAAAATGAGTACA	alt_5748_new	4	9	7	3	14	2	9	2	6	5
CTTATACAGGCAATCC	alt_5748_new	6	9	8	3	9	2	8	4	8	5
CTGCATCTAGGCCCCG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CCGGGTTCGTACGAGC	alt_5748_new	13	18	4	3	15	4	11	4	21	7
GTTGAGCGGCACTTCC	alt_5748_new	11	21	10	14	29	9	26	4	26	5
TTGAACGATATTGGGA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AAATGGTCTTGATTTA	alt_5748_new	34	50	31	28	56	25	62	31	46	18
CTTATGGATGCTCTAC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TGGATTTTCTACTCTA	alt_5748_new	3	16	9	6	17	3	22	4	14	4
ATCGGCTATATTGATT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AGTCTTGGGTACCATG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GGGCCAGTCTCTCGGT	alt_5748_new	13	30	17	19	24	15	18	13	29	14
CGTTGCATATGTTGTT	alt_5748_new	25	46	41	34	65	28	78	26	67	27
ACATCCCTCCCAATCA	alt_5748_new	2	6	0	0	3	1	2	0	6	1
TCGTCGCGTTCTAGAA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CTCTTCGGAATATCTT	alt_5748_new	6	11	12	4	14	6	16	9	7	6
GACTTAGCCCTCGATC	alt_5748_new	23	52	21	13	51	34	51	33	51	18
GCCTCTCTGTTGTCAG	ref_5748_new	7	12	9	13	18	8	16	8	25	3
GAGAACAGTTTCTAAG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TAACGTTGGTCTTAAA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TCAAGACTCGTGCTCT	alt_5748_new	23	41	21	17	46	16	24	12	46	11
ATGTACCTCTGTCAAA	alt_5748_new	8	20	11	6	22	7	28	10	20	9
ATGACCTATCGGACTT	alt_5748_new	19	70	35	21	62	15	73	22	73	23
GGGAGTCAGTGGTGAT	alt_5748_new	6	10	2	3	4	4	8	5	8	3
CGATGGTACGATGAGT	alt_5748_new	9	16	6	10	20	6	22	9	15	6
TTTGTTCTACCGTGGG	alt_5748_new	0	4	1	0	2	0	2	0	5	0
TAGTTTACATTCATGC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TGTGGGTTTCTTTAAC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCAAAAAATGTTACGG	alt_5748_new	16	51	26	16	41	9	49	18	52	22
TAATGTTTATGGCCGA	alt_5748_new	3	8	9	3	8	2	7	2	13	1
GAGTGCGCAAAGTCTT	ref_5748_new	4	9	6	8	10	5	9	1	16	7
ATCTGTGTAGTGTGTG	alt_5748_new	47	104	58	41	148	50	127	47	137	45
GCGCGGGGCCCGTTTT	alt_5748_new	5	12	6	7	10	4	7	3	14	10
GTGTGCTCGAAATGAT	alt_5748_new	19	34	22	31	42	33	54	19	60	22
GTTCTCCATGTTTCCA	alt_5748_new	24	52	35	23	28	24	38	18	46	17
AAGACCCCACTATACG	alt_5748_new	17	23	24	18	31	16	36	16	31	12
GCCTTGAACAACTGGA	alt_5748_new	12	14	13	5	25	4	25	5	17	9
ATTTTCCATCCGGGTT	alt_5748_new	14	52	20	13	28	19	45	17	39	22
AGGTGGTGGTTGTGAC	alt_5748_new	8	14	15	5	18	5	22	7	22	7
GAGCAATTAGAAGGCA	alt_5748_new	16	25	18	15	39	16	43	7	44	16
TATTTTGGCCCGATTG	ref_5748_new	53	111	65	52	119	77	149	42	125	38
CTTTCTTGTACTCTCA	alt_5748_new	1	8	7	7	8	6	12	1	13	4
ACCTGCTGAAATCTAA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AGTAAGAGTAACCTCG	alt_5748_new	7	6	5	5	8	5	7	1	6	2
TCTGTCGTACTCATAG	ref_5748_new	0	0	0	0	1	0	1	0	1	4
ACCGTCTCTGCTCGGG	alt_5748_new	16	37	28	30	35	15	54	18	54	14
TTGCTGATATAGACTC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
ACCTGTGCAGATATGT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CCTCTGTAAGGGACGG	alt_5748_new	1	8	2	0	6	0	8	0	6	2
CAATCTCGTAGTAAAC	alt_5748_new	2	5	0	0	12	3	5	5	6	2
AGCTGAACTCTTTTCA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GGTAGATCATTTGTGT	alt_5748_new	32	57	37	27	57	33	65	26	76	15
TAGCACTTCCGTTGTT	alt_5748_new	15	17	12	13	19	12	19	9	27	4
TTCATCGTGCTCGGCA	alt_5748_new	54	142	79	79	120	55	137	52	152	46
CAGACACGTTATTGTT	alt_5748_new	5	14	0	2	7	2	8	5	14	2
GGGCCCTAGTTTGTCA	alt_5748_new	9	17	12	10	17	9	26	9	28	3
ACGGAACTTTACGCCG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GCATCACTTTTTGGCC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
ATATTTGAATATCCTA	alt_5748_new	1	6	2	2	3	1	3	4	6	0
GGCGCCCCATCAACTT	alt_5748_new	2	12	4	8	16	4	6	12	4	4
ATTTAACAGTTCTAAT	alt_5748_new	11	13	5	8	21	11	15	8	11	11
CGGTTTCTTTCTAAAG	alt_5748_new	18	44	23	23	50	10	44	16	55	7
CTAATTGTCATCGGTT	alt_5748_new	8	21	20	8	33	16	27	7	26	21
ATTTTCAAAAAACTTG	alt_5748_new	24	59	31	24	50	24	48	23	53	23
AGTTATCTACCTTTTT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CCCCTTATGAAGCTAG	alt_5748_new	4	11	8	6	20	5	20	5	15	3
ATGGATCTTTCTCCAC	alt_5748_new	12	36	15	22	26	12	39	19	38	9
CGTGTGCTTTAGAGCC	alt_5748_new	30	67	26	26	75	38	71	35	63	20
CTCCTCTAATCTTGTA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CATTGTCTACTGCGAC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TTATTGTTGCGCCGCC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TTGATTTCGATTGGAT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TCAGTGCTTGGCGACA	alt_5748_new	7	24	16	4	24	6	22	13	12	10
CCAGTTAATTTTTCGT	alt_5748_new	29	59	49	18	48	22	82	30	64	16
TCAACACACCACTTTG	alt_5748_new	34	107	39	45	112	31	111	51	138	34
CCGGGTTGTAGTCCTC	alt_5748_new	5	3	3	0	3	2	7	1	11	1
GCGTGAACCCAGGTCA	ref_5748_new	5	5	3	4	3	2	3	6	2	5
ATGCATTTCTCCGTTT	alt_5748_new	12	20	20	8	14	10	20	6	18	12
TCCATAGTTGCTCACT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AGTCACCTCGGCAACA	alt_5748_new	25	42	28	20	43	24	39	24	51	15
GTGATCCGAGTGGATC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TATCTGCGATTAAGCG	alt_5748_new	3	1	1	1	12	3	5	2	0	5
GAATGACTGCGGATGT	alt_5748_new	25	60	21	32	41	23	50	13	57	18
ATATGGCATTTTTTTT	alt_5748_new	2	6	3	2	3	1	5	3	6	3
TCTCCGTTTCGCGTCA	alt_5748_new	5	21	14	7	26	6	24	5	21	6
AAAACCCTTACTACCT	alt_5748_new	30	68	39	39	61	25	62	22	82	25
CTAATCTGACACGCTG	alt_5748_new	10	15	5	7	26	9	20	9	29	7
CAACAGGACTACTTCG	alt_5748_new	75	163	89	67	182	74	174	93	181	57
TCTCGGCCCTTTAAAA	alt_5748_new	0	0	0	0	0	0	0	0	0	0
ATTAGAGGCAGAGCTT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GTGTTCACGCCGGGGA	alt_5748_new	34	53	33	29	58	20	51	23	54	27
TCCCGGTGGCTCCGTT	alt_5748_new	4	8	2	2	11	5	5	3	12	0
CTAGGGGCACCGTTGA	alt_5748_new	32	57	27	32	64	23	62	21	67	35
ATCTGGTTACTGCCGG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CAGTGTGTATTTAAAC	alt_5748_new	4	10	2	3	9	3	13	6	13	6
CGCAGCTTTATGATCC	alt_5748_new	30	40	31	22	58	15	65	13	44	28
GCACTGGTCATCCGGT	alt_5748_new	15	31	28	24	31	16	45	16	59	16
AGGTGCGACGTGTACA	alt_5748_new	8	14	13	11	27	3	23	13	30	11
CATTAGAGTATTTTTC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GCTTACACTCGCATTC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
ATCCTCATGTTCTCTC	alt_5748_new	19	45	26	14	47	19	39	10	31	11
CTCGACAGAACATTAT	alt_5748_new	7	2	1	1	3	1	6	2	2	0
TGAAAGTATCTACTCG	alt_5748_new	7	14	7	5	21	5	20	7	11	5
TTCCGACGAAGACTTG	alt_5748_new	5	7	5	3	10	3	15	5	8	2
GGTGGTTCTAATAATT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CGGCAAGTAGTCCACA	alt_5748_new	29	72	32	35	59	26	68	30	76	28
TTTGAATACCATCTAC	alt_5748_new	29	57	30	29	61	31	51	31	70	22
CCATCGCAGCCTTATT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GCAGATATCCAGTTGA	alt_5748_new	4	8	6	1	8	6	12	4	11	3
GTTCACGTCTAAACTC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GCGCCGCCACTCCCCC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CATTAGTACGGCCCGC	ref_5748_new	21	44	27	23	47	20	56	28	53	24
ATATCCATCAGGGCCA	alt_5748_new	2	13	7	7	18	7	12	5	21	8
GCCTGTGCTTGTTTAG	alt_5748_new	12	5	6	3	11	6	15	7	21	1
CCCACTTACGTATCCG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GTGGCCTTTGGTTAGG	alt_5748_new	16	46	19	10	30	12	41	14	38	11
TGGCCGCTGAGTAGCT	alt_5748_new	28	70	44	45	67	31	62	28	70	20
CTAACTTTCTCCAGCT	alt_5748_new	1	3	2	0	5	5	2	3	9	0
TTTTTGTTGCGTTGCA	ref_5748_new	24	74	53	36	75	48	73	27	81	35
GCACTCCTTGTTATTA	alt_5748_new	4	20	5	6	23	9	27	9	21	7
TTCCAACCAACAACGG	alt_5748_new	9	25	13	9	35	7	29	10	38	10
TCTTATCCAACCCTAA	alt_5748_new	4	14	4	6	12	2	10	4	7	5
CGCTCTCCATTGGCAT	ref_5748_new	31	75	36	54	91	35	77	22	86	40
TGCTCTACCCATTGCA	alt_5748_new	8	16	6	5	11	5	11	6	11	7
TTTCTATTTAGTGTCA	alt_5748_new	14	25	16	11	35	12	36	14	34	19
TCCCCTATGATTTCCC	alt_5748_new	5	10	1	8	12	5	19	6	25	3
GCCTGCCTCTCCCTTC	alt_5748_new	27	54	57	38	84	35	64	36	72	30
GTATTGCTTAATTTGT	alt_5748_new	28	54	36	34	63	25	52	36	52	30
CCTTTACTCGAGACTT	alt_5748_new	6	18	7	4	14	7	17	5	16	4
CCTAGGTACGAGTACC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GTCGTTTTGACGTTCG	alt_5748_new	1	0	1	0	1	0	0	1	3	0
CAAGGCTCGGCTGATG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CAGCCATTGCTATATG	alt_5748_new	25	74	26	18	55	18	85	19	56	24
GTACAGGGACCGGGTC	alt_5748_new	34	45	40	32	76	16	56	24	72	22
CTTGTAGTTAGTTCAT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
ATACCATCCCGGCGCG	alt_5748_new	20	66	20	35	79	32	74	22	63	20
AGGAGCACCCGTCCAA	alt_5748_new	3	17	5	2	14	5	16	6	16	4
GATACCTCCCGCTCCG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TGATCTTCAGGGTAAG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
GTATTAGGTGTAAATG	alt_5748_new	31	69	27	22	57	22	63	22	59	13
CTTGTACCTTGTTGAG	alt_5748_new	4	16	10	3	19	12	24	8	21	9
ACGGAGCGAACGTAGA	alt_5748_new	12	23	9	11	19	13	15	3	17	7
AGTTTCCGCCTTAGTG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
AAGTCCATCAATTAGC	alt_5748_new	5	3	0	6	5	7	6	6	13	1
GTACGATAATAGGGCT	alt_5748_new	11	14	11	11	14	13	22	6	11	9
CCGTGTAAAGGGCCAT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TGTTCTAACTTCGCAA	alt_5748_new	7	29	15	7	27	12	16	17	19	11
CGTCGCTATTCATATA	alt_5748_new	31	102	42	52	118	47	99	48	111	26
CCTGGTTGGCCTATTT	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CAATATTTCATGCATG	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TCCCTCCACATGCCGC	alt_5748_new	2	15	1	1	9	1	9	1	2	1
TAGTGTTTCACGGTTT	alt_5748_new	18	47	33	32	48	16	52	16	57	15
TTACGAAATCTTATCC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
TTTTCGATCCATAGGA	alt_5748_new	14	24	17	6	16	10	24	4	24	11
GTTGTAGCAGGGTCAC	alt_5748_new	3	6	1	7	7	2	14	2	9	1
CTGGTTGGAACCATTC	alt_5748_new	14	57	25	18	30	9	46	19	56	17
AGGGGCGAGGCTCGAC	alt_5748_new	0	0	0	0	0	0	0	0	0	0
CTCAAATGCATCGGAT	alt_5748_new	3	2	3	4	18	6	12	6	13	1
GACTGTAGCGAGAAAG	alt_5748_new	4	22	7	2	10	3	10	4	21	8
CCGTTTAGTGTCCGCG	alt_5748_new	6	21	1	4	29	2	26	3	31	4
TTAGCCGTACGCCGCT	alt_5748_new	5	31	10	7	30	14	25	15	33	16
TATCATACCCGTTATT	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
GGATAAGTGGCTTTCT	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
TCTCAACTCCGTTGTA	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
CCGAAACCCCCTATTC	ref_5065_RC	7	19	20	12	23	15	30	10	29	13
AGATTGGGAGGGTCGT	ref_5065_RC	24	40	24	20	31	30	26	25	35	26
GTTCCTAACGGGGCTA	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
CTTTTTTATGTATTTT	ref_5065_RC	0	0	0	0	0	0	0	0	1	0
CGAACCGCAATTGCTA	ref_5065_RC	32	34	18	27	36	26	44	26	43	21
TGCGCGTACAGGTGTC	ref_5065_RC	52	85	66	53	66	51	54	44	66	61
ACGAGCACCGTTCTAC	ref_5065_RC	16	22	25	21	17	15	25	9	26	15
CCGTCACACGATTCGA	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
CGCGGGTTCAATTACC	ref_5065_RC	22	21	42	27	26	18	23	31	25	24
AAACCCTTACAAATTG	ref_5065_RC	77	100	113	79	100	78	119	74	76	62
CCTTGCCTTTTCGTTG	ref_5065_RC	24	101	39	36	116	32	118	33	88	37
CGGTACTGTCGTACAG	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
TGCTGAGTATAGTCGC	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
CTAATGGGTTTTGTTG	ref_5065_RC	16	17	43	27	32	25	26	31	18	20
GTCCTCGCAACTCGCC	ref_5065_RC	62	81	72	48	69	60	76	35	82	48
TTTCTGGTGATTTACC	ref_5065_RC	12	10	19	10	22	11	13	13	12	8
TTCAACGAATTATGGA	ref_5065_RC	63	65	83	78	57	67	70	67	76	77
TTCCTATCGGCTGGCC	ref_5065_RC	0	0	0	0	0	0	0	0	0	0
GGGATGTCAACTTGGC	ref_5065_RC	23	26	26	19	28	25	33	17	31	22
GGTTGGGGCTCACAAA	ref_5065_RC	88	107	131	114	121	93	118	82	106	83
TGTGGTGATTGGGCCG	ref_5065_RC	161	216	178	162	177	136	207	135	230	136
AGTTGCGGAGGCGAGT	ref_5065_RC	24	17	18	16	20	14	18	16	17	18
TCATAAGCTGTCCGAT	ref_5065_RC	54	62	80	68	58	45	71	47	58	50
GTTGTGTAATTCAAGC	ref_5065_RC	29	27	31	31	25	31	37	21	30	27
AGCGAAGGCCGTGTAA	ref_2913_RC	35	48	46	41	39	40	55	41	56	43
ACAATGCTTTGTAGGC	ref_2913_RC	16	18	23	19	22	18	19	20	21	12
ACTGTCTGAAGTCTAA	alt_2913_RC	94	189	112	88	179	101	175	110	192	88
CGGATGTCTTTTTAGG	ref_2913_RC	42	70	58	43	41	44	49	32	50	34
TTTGTCATGGCGTTCA	ref_2913_RC	56	84	61	77	65	54	74	62	93	56
TGACATTATCAGAGGG	ref_2913_RC	24	35	29	26	26	24	24	29	56	29
GAGTGTTCTCCGACCG	ref_2913_RC	28	37	25	20	33	12	57	26	40	17
AGTCGTTGATCGTGGT	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CGTTAAGTAGATTCAT	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
GGCCTGTATCGCCCCC	ref_2913_RC	0	4	4	3	1	1	2	4	3	2
TCTGCATAAAATTTCT	ref_2913_RC	34	37	39	42	26	34	41	26	48	30
GTAATTTCCTGTGACC	ref_2913_RC	175	196	183	197	221	161	246	141	245	144
ATTAGTTTTGGCATTC	ref_2913_RC	6	7	9	6	9	8	9	9	8	6
CCACTGATTTCCCTGA	ref_2913_RC	31	90	42	50	101	34	86	33	96	29
CAGGGCCTTCTGGTAG	ref_2913_RC	94	181	121	97	181	102	197	106	218	113
TGGTCTTTTTGGTCTG	ref_2913_RC	42	65	49	52	60	36	48	35	54	48
GCGCCCTTTAATTCCC	ref_2913_RC	44	46	49	41	46	35	26	42	59	38
GCACATGCGTGCACTC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CTTATAAATTCGAGCC	ref_2913_RC	20	18	40	25	24	23	29	24	30	12
CATGCGCCTAAGCCGC	ref_2913_RC	10	29	7	6	31	15	31	8	31	4
CTGCCTGATCGGTATA	ref_2913_RC	31	35	39	23	51	29	46	24	54	20
ATCTTGAGTAGGCGCT	ref_2913_RC	26	36	24	30	33	29	31	27	29	20
GACATTTAGTGCGAGT	ref_2913_RC	91	160	107	93	134	82	121	85	126	89
AATACTCCTTTGTTCC	ref_2913_RC	9	3	4	3	8	6	9	6	10	1
ATGCTTACTTTCGGAT	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CTCTGGCTATTCGGTC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CCGCGAACGCCGATTT	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CTGCTCCTTAATGCAA	ref_2913_RC	8	10	18	12	7	8	16	7	6	1
TTTCGATTTCACCCCA	ref_2913_RC	20	16	14	22	29	28	16	11	16	18
CTTTGTACCCCACTAA	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
GCGATCATGTCCAGTC	ref_2913_RC	41	36	36	36	38	29	51	33	62	32
TTCGGACTACTTCTTG	ref_2913_RC	20	31	23	21	23	15	20	13	35	9
TCGTATCCGGATGCCT	ref_2913_RC	7	15	11	6	16	1	7	9	14	5
TTGGGCGGACATATTT	ref_2913_RC	35	44	49	28	31	36	51	22	39	30
GTATGTCTTACGATTT	ref_2913_RC	124	179	119	103	165	114	181	92	182	90
ATATGGATTCAATTAC	ref_2913_RC	19	17	27	17	25	23	36	7	8	15
GAACTTCCTGTGATTT	ref_2913_RC	3	3	11	4	3	6	5	7	1	11
GACGCCATCGTCAACT	ref_2913_RC	4	6	6	1	7	4	4	1	2	2
CTCACATCCGACTATG	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTATTCTTTTCG	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CGCACGGAGATAGCCG	ref_2913_RC	22	26	29	21	27	23	27	24	32	17
ATGATAAGGTGGACAG	ref_2913_RC	34	61	68	38	44	44	67	44	60	66
TCGCCCGTACGATATC	ref_2913_RC	7	11	7	10	9	0	11	13	11	7
GTTTTGGTCATTTTTT	ref_2913_RC	60	54	60	40	61	47	71	59	87	44
TCCTAGTACACTAGCC	ref_2913_RC	1	23	7	2	19	1	14	2	23	5
ATTGTGCCCCTTGTTG	ref_2913_RC	16	33	28	14	34	16	11	22	24	19
CAGCGTGACGTTATCA	ref_2913_RC	21	18	19	19	20	21	17	14	19	15
GGGACTACACCGTCTA	ref_2913_RC	63	85	86	50	93	49	77	44	87	50
TCGTTCCCAACTAAAG	ref_2913_RC	24	29	32	23	32	17	24	22	31	19
GCTTGTATATTTTTGT	alt_2913_RC	12	33	29	28	40	44	26	17	26	22
CCATAAGGGCCGAACC	ref_2913_RC	59	104	70	71	94	69	88	68	118	58
GAGTTGGCCGATTGCC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
TGGTTACTTTCCAGCA	ref_2913_RC	16	18	20	12	23	19	27	25	20	10
GTTGCTTCCTTAAACA	alt_2913_RC	100	120	105	101	128	86	138	75	144	61
CGAATTTGCGCAACTA	ref_2913_RC	0	1	1	0	0	1	0	0	1	2
TCAACGTTAACTCCTG	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CTCGGCAAGCCTATAC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
TCTCTCACCGAAATCA	ref_2913_RC	33	26	25	30	17	34	32	17	32	27
GCTGTTGATTACCTGT	ref_2913_RC	7	18	11	11	15	7	20	6	14	6
TTATCCCGAAGTCTTG	ref_2913_RC	37	29	31	31	37	30	56	23	40	30
GACTTCCCGATTGGAC	ref_2913_RC	13	16	11	5	13	10	11	9	11	9
AATTGCCTGTTATCCT	ref_2913_RC	16	26	28	26	35	16	31	23	30	12
TATTCTACGTCTAGTA	ref_2913_RC	10	11	11	8	15	10	17	11	21	11
TGAGATGTTAAGGCAA	ref_2913_RC	2	2	6	4	3	2	4	1	5	2
TATTGTCGGAGTTACA	ref_2913_RC	13	9	9	17	13	8	14	17	19	3
AGCTTGTCGATAAATT	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
AACACGACAACGGTAA	ref_2913_RC	31	60	52	45	66	42	45	40	66	42
TGGCGCACCGTGAGTT	ref_2913_RC	21	43	25	28	35	23	28	24	27	21
CTGGCAATGTCCCGAT	ref_2913_RC	6	11	9	10	9	6	9	7	15	7
CGGTAGAAATTACCCC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
TGTGTTATGCTCCATA	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
TTGCCTGTAAGCTATT	ref_2913_RC	49	74	66	48	73	34	72	50	63	43
TCAGATGCTTGACAAA	ref_2913_RC	21	32	17	21	39	20	28	19	38	5
CCTAATGACGGTTCTT	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
TGTTTGTGCTTTTACC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
GTTTGAGATCGGGATA	ref_2913_RC	18	23	18	12	19	19	19	13	26	17
CCGCTAACTCGTACAA	ref_2913_RC	9	24	11	9	23	11	28	8	33	7
CTCAAAGTTTCCCGTC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
AGCGGCTGTCATCTCG	ref_2913_RC	58	61	69	43	75	50	65	40	104	45
TTTTCAGTGGCATTTA	ref_2913_RC	43	64	52	36	45	34	51	40	63	35
TCTAGCATACTTTGCC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
GGTTCCCTTATGTCAT	ref_2913_RC	1	0	0	0	0	0	0	0	0	0
GACGGGGGTCAGTTTT	alt_2913_RC	153	226	164	155	212	136	220	156	237	118
TCGTCGAGCAGGCTCA	ref_2913_RC	9	8	4	2	5	3	13	5	7	9
TGTCCCTCCACAAGGC	ref_2913_RC	29	46	54	37	47	18	62	40	64	43
GGTCCATCATCTAATT	ref_2913_RC	10	13	9	10	12	13	15	10	10	4
TGGACTCTGCTCCTGC	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
GTGCATTCTACGAGTG	ref_2913_RC	0	0	0	0	0	0	0	0	0	0
CCAGGTGTATCCTGCC	ref_2913_RC	6	32	7	7	36	2	41	8	55	5
AAGCATCGATTACCAG	ref_2913_RC	4	3	3	1	6	1	9	2	8	1
AGATATGCTTGATGCC	ref_2913_RC	30	30	37	35	30	34	39	37	32	30
GGGTTACACGATTTTC	ref_2913_RC	45	35	37	28	43	31	34	38	31	39
GTAATTTCCGTGGTGA	ref_2913_RC	35	34	34	27	41	28	27	23	43	30
CGTCGTTTAGCACCCT	ref_2913_RC	6	9	2	11	7	6	2	8	4	6
ATCCCGATTCCGCATT	ref_2853_fdr	334	234	401	322	238	322	252	292	234	305
CCGCTCATTTGAAGGT	alt_2853_fdr	28	29	36	40	27	24	33	35	34	28
GTTTGGCTTTATGAGT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTCTTATCGCTCA	alt_2853_fdr	35	18	52	41	21	20	17	29	15	38
TTTCTTCCGTTATCTT	alt_2853_fdr	31	10	35	39	24	31	18	31	24	20
ATCGTTTTTTCTTTTC	alt_2853_fdr	41	14	37	43	14	31	16	35	23	39
TTCTCCGTAGTTATAA	alt_2853_fdr	89	62	102	88	55	90	63	67	52	71
AGTTGTGTCAGAATGT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCGATGTAATAT	alt_2853_fdr	173	79	178	172	74	151	82	137	79	155
ATGGCCCTGAAACACC	alt_2853_fdr	30	16	34	28	15	26	15	21	19	26
GCGTCGGATCGCATAC	alt_2853_fdr	15	22	35	32	30	22	16	15	24	18
AACCCCATCGTTGTCC	alt_2853_fdr	2	2	3	0	0	1	1	2	2	0
CACTGCAAAGTATTTA	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CACAGGGTCTCTCGGT	alt_2853_fdr	54	51	52	39	34	54	33	48	34	60
CTTCCTACGGTCGAAC	ref_2853_fdr	143	136	140	105	131	115	151	101	145	96
GCCTGCATCGCAAGCC	alt_2853_fdr	23	18	33	18	15	27	12	29	24	25
GTATCTGCTCAAACGT	alt_2853_fdr	230	143	278	229	168	215	136	196	186	169
ATTCTTGTACATCTAT	alt_2853_fdr	36	34	47	40	34	36	28	31	21	26
TTATTTGTGAAATCAC	alt_2853_fdr	26	12	31	18	12	23	14	12	15	20
TACGACTTAGACTCTA	alt_2853_fdr	53	49	88	66	47	61	47	47	66	66
GAACTGCCTCCTTCGT	alt_2853_fdr	26	23	58	44	23	31	38	28	20	30
CACTGTTTCGACCGAG	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCAACGCACAGCT	alt_2853_fdr	39	26	49	42	26	36	27	24	24	30
GTCCTTCTTTTATCTA	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCACCCTTTCAG	alt_2853_fdr	17	5	14	15	4	10	6	6	8	13
TCACTGGTTAATCCAG	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTGGCGTAGCCAG	alt_2853_fdr	27	17	27	28	12	22	20	15	20	26
TCCGCTGCCACGCTCT	alt_2853_fdr	100	63	139	133	84	98	76	126	91	94
TCTAAAAGCTCGACGT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CCCACCGCTCACGACC	alt_2853_fdr	2	6	8	8	3	1	4	10	7	7
ACATTTGTCCGCCTTC	alt_2853_fdr	17	12	25	25	19	14	10	18	11	17
CTGTAATCTGTGTGGT	alt_2853_fdr	2	3	10	5	5	8	5	8	6	14
TCGGAGTCTCAGAGAG	alt_2853_fdr	58	48	62	56	33	56	62	55	43	48
CCTGCTTGTCATCCGG	alt_2853_fdr	20	37	19	17	27	13	42	14	33	5
CGGAAGTGGTACACTC	alt_2853_fdr	44	64	49	41	41	40	56	30	51	35
TTTCTGTGACAGCCCC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCGTACAGCTGTG	alt_2853_fdr	66	35	76	47	38	73	41	56	43	59
AGATGTACGGGTAGCC	alt_2853_fdr	35	19	43	43	16	18	32	29	19	22
TAGAGCTTCTCATATC	ref_2853_fdr	12	4	11	7	5	12	9	4	2	7
TAATAGGTAATTATAT	alt_2853_fdr	31	18	33	31	19	35	17	25	31	17
TTCGCTGCAGAAGTGA	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
GTACTCGGTTATTATC	alt_2853_fdr	9	5	17	8	4	11	7	5	7	19
TCGGGCTCAATTATAT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGTATTGGGCATG	alt_2853_fdr	128	75	154	152	80	112	97	119	81	118
AGATAGCTCTCTCACC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
GTAGTTGCCACTTACT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCTCTTTAGCATG	alt_2853_fdr	2	6	3	2	7	0	15	1	15	5
GGATAACTCGTGTGTC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
GGCTATCGGCGCCTTA	alt_2853_fdr	34	27	38	41	20	39	33	32	23	33
GTATGCGTATTCCAAA	ref_2853_fdr	24	39	35	21	44	23	38	23	33	15
CCCGTTGGAAGCATAC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTTTTGGCGTAG	alt_2853_fdr	8	6	10	6	4	9	9	3	4	10
GGCCATCGTGTACTAC	alt_2853_fdr	9	19	19	15	9	11	17	16	4	11
TGTCGCCTTTGTTTAT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TATATCCCTCAAATAC	alt_2853_fdr	16	12	17	16	11	16	19	11	22	14
TGCGACACGATTTAAA	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGGATTGATCGGTGGC	alt_2853_fdr	31	19	53	28	29	30	22	38	27	45
TCAAGCCTCCACGGTT	alt_2853_fdr	72	56	101	69	57	64	60	64	75	70
ATGCCTATCTGAACAT	alt_2853_fdr	7	7	18	15	1	8	7	3	12	8
AACCTGTAATCTGGCC	alt_2853_fdr	9	4	4	4	10	1	6	6	3	14
ATACTTATGTTCTTAG	alt_2853_fdr	13	4	12	17	2	5	11	9	8	5
CTATCAATAGAGCGGT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGGGTTCGAAACG	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGCATACTGACGT	alt_2853_fdr	11	12	20	16	8	16	9	15	19	17
CTCAACCGATACCAAG	alt_2853_fdr	40	33	39	42	37	24	27	31	41	26
ACGCATGCTGGCCTGA	alt_2853_fdr	103	63	115	91	59	93	65	92	59	92
CGCTATTGCCCTAACT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCGCTTCCGTACA	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TAAACTGGGTCTATTG	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
AATAACTGATATTGGA	alt_2853_fdr	32	28	24	33	15	23	19	33	19	30
CTCGTGGGCCTCGATT	alt_2853_fdr	20	26	35	22	18	21	33	27	23	13
CTCGCGAGCATTAACT	alt_2853_fdr	45	41	69	66	46	45	47	54	34	55
TTGGCCTTTTATCTTT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCCCACCGGCCA	alt_2853_fdr	23	33	29	18	28	16	35	19	27	23
TGCTCCTATGCGATTT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGGCGCGAGTATT	alt_2853_fdr	29	16	29	22	11	31	17	29	22	27
TTTTTGTCCTTAGAGA	alt_2853_fdr	30	26	47	46	29	40	34	24	25	36
GTTTGCCGATGTCAGC	alt_2853_fdr	21	16	11	17	10	27	9	13	19	17
TGTATATTGGGCTTTA	alt_2853_fdr	38	19	53	43	43	50	42	48	32	42
ACACGTCACTTCCTGA	alt_2853_fdr	7	4	10	4	5	1	4	4	2	1
CGGAAATGTAATTCTC	alt_2853_fdr	47	30	57	58	44	46	24	45	36	40
CTTCCCCGGAGTGTAC	alt_2853_fdr	65	59	91	65	61	57	75	75	64	52
CTGACGTGGCTATGCT	alt_2853_fdr	6	9	8	8	8	8	6	2	5	12
TGCGTGCAAACCATAT	alt_2853_fdr	24	16	37	32	18	26	18	28	18	26
CTTATATCACAGTCGC	alt_2853_fdr	7	8	12	10	12	13	6	9	9	2
GGTTGTCACGGTCAGC	alt_2853_fdr	20	10	25	19	8	22	10	13	5	17
CCATATAAGGACCGGT	alt_2853_fdr	50	29	60	59	36	52	47	56	48	61
GGCGAAGTATCCTGTG	alt_2853_fdr	38	14	31	31	19	27	11	19	12	31
TCGTCCTTATGCGTTT	alt_2853_fdr	13	8	18	10	7	8	4	9	6	15
GCTATATAGGTCAGGC	alt_2853_fdr	31	12	25	13	11	19	21	23	12	27
TCTACGTCGTGTTCCT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TAATCTATTAGCCTAA	alt_2853_fdr	55	42	72	71	30	46	35	56	24	43
AGTTTTCCGTACTTGC	alt_2853_fdr	72	60	102	98	61	76	47	73	78	81
TCGCAGCTTGGTATTC	alt_2853_fdr	125	108	132	135	84	107	91	119	98	100
TACTGAACGTCGCCAG	alt_2853_fdr	23	26	48	28	22	32	20	29	28	20
GTATGGCGTGTCGTCC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTGTGAGTACTC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCCACGTCTGCAT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CACAATCGAATAAGTA	alt_2853_fdr	2	4	2	2	9	5	2	5	7	5
TTGGGCCTCCGGGGCC	alt_2853_fdr	34	22	37	24	12	26	21	24	25	35
AGCACACCGGACCTCC	alt_2853_fdr	79	42	89	71	42	77	43	59	50	49
TACGCTTTCGCGGGTA	alt_2853_fdr	39	20	24	49	20	31	17	33	17	26
AGTATTCCACAATTAA	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CATTTGATTCCAGTAC	alt_2853_fdr	26	19	27	26	14	26	17	28	27	17
CTTGTTCTTGATCTGT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCCGTCGGGGGC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGTACGAGACTCA	alt_2853_fdr	18	28	28	28	18	40	29	39	14	20
TTCTCCATAATAATAA	alt_2853_fdr	18	18	35	40	12	36	15	21	19	29
CGCTCTTTCTAACTTC	alt_2853_fdr	56	42	105	78	28	61	41	64	31	60
CGCTCAATACGTTGGC	alt_2853_fdr	10	7	4	5	3	9	3	6	4	9
TGGTTGGATGAAATTC	alt_2853_fdr	9	12	17	22	13	10	7	16	7	18
TCCAATGCTGGAGACC	alt_2853_fdr	142	82	186	140	89	135	89	108	86	151
CCTTGCTGCTCCATAT	alt_2853_fdr	34	23	39	40	21	33	23	24	22	30
CGGTTGTGAATCACAT	alt_2853_fdr	27	26	36	31	22	31	17	28	18	32
AGAGGCTACAATATGG	alt_2853_fdr	122	74	150	142	75	114	81	114	75	116
AATTCATCTTAGAAAC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTAGTTTCTTCTG	alt_2853_fdr	74	55	69	54	47	45	42	73	54	46
TCGTCATTATACCTTC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCCTCTCGGCAC	alt_2853_fdr	51	35	59	58	47	60	54	53	40	49
TAATTGTTGCAAGCAA	alt_2853_fdr	27	25	41	33	27	29	24	29	19	30
GATGCATGTATCATGC	alt_2853_fdr	2	0	0	3	2	1	4	1	4	6
ATCTCGCAATGTGTTG	alt_2853_fdr	75	68	111	109	39	88	57	86	63	91
TTAGGTACGAATTCTG	alt_2853_fdr	3	1	2	2	1	1	0	1	0	4
GTCCTCCGCGTATAGG	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTTGTGCGTGTTC	alt_2853_fdr	65	40	83	78	44	68	55	65	53	66
CAGTTTTCATCTAAAA	alt_2853_fdr	87	68	117	96	79	83	79	91	87	88
TCCTATGGTGTTAGGT	alt_2853_fdr	35	35	34	37	26	29	36	28	30	30
ATGAACCGTTTTCCAC	alt_2853_fdr	55	32	63	74	39	67	27	61	38	60
ACGAGCCATTATTAAC	alt_2853_fdr	74	57	97	91	59	69	58	77	71	59
CGGGAAGACTGATTTA	ref_2853_fdr	13	12	20	20	14	16	18	28	19	14
TCAAATCTTCGAATGC	alt_2853_fdr	5	10	12	9	2	9	6	6	10	12
GTTTGTGGGCGTTGCT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTATGTGTCTCAC	alt_2853_fdr	37	24	41	46	26	33	23	48	23	30
CTGCATCGCTTGCGGA	alt_2853_fdr	153	60	161	136	78	108	77	123	90	108
AGTCTTTGAGTAAATC	alt_2853_fdr	42	20	41	46	26	37	29	29	25	40
CATGATTGACATTGAT	alt_2853_fdr	24	19	45	24	13	31	12	32	19	16
CGCGGTTAGGTAATTG	alt_2853_fdr	2	1	2	0	0	1	5	1	1	0
ATTGTAGCAGTCAAAT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGTCATGTCTCT	alt_2853_fdr	4	1	4	2	0	4	2	1	2	2
ATCAGAAAGAGTTTCT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGTTACATCGTAC	alt_2853_fdr	75	45	80	76	28	59	51	61	48	89
TTTTGACCGTCCTCGC	alt_2853_fdr	66	82	96	72	74	86	72	77	66	46
TGGGTAATGTAGTGTC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
CACCTGACAAATTAAG	ref_2853_fdr	106	75	99	104	77	101	90	90	80	77
TTGGCCGCCGGCGGTA	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTATGTGCCTCTT	alt_2853_fdr	32	28	39	41	24	23	21	45	22	35
TAGATATAATTTAATC	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGGGTGCTACAAC	alt_2853_fdr	54	36	83	70	47	47	44	60	43	54
TTATAGGCCAAATGTT	alt_2853_fdr	0	0	0	0	0	0	0	0	0	0
TACCCTCCTACGGAAT	ref_2853_fdr	48	86	66	74	90	37	79	43	99	50
GACCTGAGCCATGCGT	alt_2853_fdr	38	31	51	35	27	51	15	52	38	41
GTTCATTTTTTAATTC	alt_2573_missing	25	50	43	38	38	21	54	27	41	26
AGATAGCCGGGATATA	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
TGTGGTGTTTCCGTTT	alt_2573_missing	30	60	38	24	49	32	64	24	47	28
AGTATATTATAGTGTA	alt_2573_missing	9	16	5	15	14	10	18	11	17	8
TCAACCACCGGGGTTC	alt_2573_missing	13	25	16	8	24	10	27	9	35	9
CAGTCCACTGCTATCT	alt_2573_missing	0	5	2	1	2	1	3	0	9	2
ATCGTTAGTGGTTACT	alt_2573_missing	6	16	7	6	8	5	21	3	10	15
TGCTACGGAAGCCCAG	alt_2573_missing	47	68	48	56	93	50	78	55	99	50
TCCCCCAGACTTGAGC	alt_2573_missing	13	12	8	15	18	18	23	10	18	6
GTTTAGAATCGGGTTT	alt_2573_missing	12	26	29	13	27	9	27	19	31	14
TCTTTCTATTGGAGCA	alt_2573_missing	5	5	10	8	12	4	4	8	9	4
CTCGGTCACACCATGA	alt_2573_missing	56	93	43	44	117	52	113	40	125	28
GAGCCGAAAACGGGCG	alt_2573_missing	20	40	28	20	26	33	31	26	28	24
GTAGTTCCATGGTGTT	alt_2573_missing	321	424	358	330	486	307	503	277	462	269
ATCTGTCGATTTACTA	alt_2573_missing	20	39	19	25	40	23	31	27	48	27
CCTGATAACTATGAAT	alt_2573_missing	8	11	13	19	22	3	18	2	22	10
GACAAATATATTCATA	alt_2573_missing	0	0	0	0	0	0	0	0	0	0
ACCCTAGTCACCGACC	alt_2573_missing	2	8	7	8	10	3	2	6	5	1
TCCGTCGTGATTCGTG	alt_2573_missing	144	295	216	161	333	180	322	140	329	177
CGACGTAATCGTCTAT	alt_2573_missing	20	26	18	20	28	20	28	13	21	22
TTGGGTAAAACTTCAA	alt_2573_missing	16	20	22	15	28	7	27	16	24	12
GAATTCCTGACTCATG	alt_2573_missing	6	9	10	12	13	8	10	6	9	12
ATCTGCTTGTAACGCG	alt_2573_missing	0	0	0	0	0	0	0	0	0	0
GTGGTTATCTTTTGTC	alt_2573_missing	105	111	97	74	130	81	95	88	107	66
CATGGCACTCTGCTTG	alt_2573_missing	3	4	10	2	11	6	7	5	5	2
AGGACGCTGGGTGCTA	alt_2573_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCGCTCGATCCT	alt_2573_missing	7	12	7	6	5	5	12	3	10	10
GTGGGCTGTGCCTGCA	alt_2573_missing	22	28	27	23	34	23	40	17	28	11
AAGCTTATATCGTTTT	alt_2573_missing	25	44	34	32	41	29	41	35	33	27
ATGTGCTGAGTTTCAA	alt_2573_missing	22	33	15	16	37	21	30	20	49	12
CATGGATCCGGTACAG	alt_2573_missing	28	34	28	25	35	25	32	18	42	14
TTTTGGGGCACACCTC	alt_2573_missing	49	69	53	43	68	33	57	27	95	30
TTCTCCAGTTCAGGAG	alt_2573_missing	40	70	55	40	80	28	71	39	64	45
AGCCAACGTTATCGAA	alt_2573_missing	7	12	7	3	15	2	9	1	12	3
CACCCTGTTGACTGCC	alt_2573_missing	0	0	0	0	0	1	0	2	0	2
ACCTCGTAATACACAG	alt_2573_missing	7	29	16	14	20	10	26	16	18	12
GAAAGTACTTTTTATC	alt_2573_missing	20	24	21	22	30	18	42	19	32	16
ACACCTGTAACGAGCG	alt_2573_missing	20	27	18	17	35	24	30	20	40	21
CGTGACCTGTCTATCG	alt_2573_missing	7	14	7	5	18	8	11	6	18	14
TCGGTTTTAGGTTGCG	ref_2037_negative	1	4	6	2	2	2	7	1	3	1
CAGTCTCCCTTGACTC	ref_2037_negative	84	222	89	88	233	85	228	74	221	68
CTTTCCGGGGTCCCTA	ref_2037_negative	13	20	21	15	24	25	25	13	22	16
TGAGGGTACCCAATAA	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
GTTTTGTTCACATTGT	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
CGTCCGTTTGCAAGGT	ref_2037_negative	10	20	8	4	8	12	20	11	24	15
GTTGCCGTGTGTTCTC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TGGCTTTTGACTCGAT	ref_2037_negative	19	53	40	23	56	17	58	24	55	22
TTCCCTACACCGCACG	ref_2037_negative	13	18	11	14	17	8	16	7	17	8
TTAGTATACGCATGAC	ref_2037_negative	49	103	65	48	117	48	115	32	123	42
ACGCCTATCTTAGTAA	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
ATATTTATACATATTG	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TTTCCGCTACCGTTCG	ref_2037_negative	16	53	29	23	49	23	38	16	45	18
GTCGCCGAATTATGCA	ref_2037_negative	78	134	89	64	158	77	142	72	129	63
TCTATAATCAGATCCC	ref_2037_negative	39	55	50	44	61	33	78	30	73	28
GCGCTACATGCCGCGG	alt_2037_negative	64	121	91	61	118	70	121	66	111	62
ATTCTGTCTCTGTAGC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
AGCGAGGTGTCCTATC	ref_2037_negative	14	13	9	16	26	9	19	7	31	14
CCTGTGTACTCGCTCG	ref_2037_negative	120	209	171	104	257	106	232	110	234	95
TCTTAAGATTAGTGTT	ref_2037_negative	12	33	14	16	47	16	46	21	53	20
TTTCTTACCGTGCCGC	ref_2037_negative	13	55	14	24	68	13	53	8	62	20
TTTTATGTATCTGGAT	ref_2037_negative	1	2	0	1	3	3	0	1	0	1
GTGTGTCACGGTCTAG	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TCCTTATGATGCGCGG	ref_2037_negative	7	33	15	10	27	11	17	11	28	8
TACCAGTGGCATTCCG	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
CTTCCTTAACACGCAC	ref_2037_negative	18	31	30	16	25	14	30	20	31	16
ATGTCGAATAGGCCTT	ref_2037_negative	101	223	118	102	211	104	215	107	219	92
GCTCTTTAGTCCGAGG	ref_2037_negative	3	3	3	0	3	0	2	0	2	1
GGTAGTCTATCCAAGC	ref_2037_negative	20	54	32	30	69	22	66	32	54	29
TATCAAGGGCTACGAT	ref_2037_negative	77	181	119	76	158	91	156	90	183	62
CGGATTTTTACGGACG	ref_2037_negative	4	14	4	3	8	10	19	5	9	6
TCCGTACATGACACTT	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
ACGACATGCAAAGGTG	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
CTATGGTAGGCAAGGC	ref_2037_negative	19	41	27	21	43	21	36	32	51	24
GACGCAGAATATGACG	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TGTTCTCGTAGCCCAC	ref_2037_negative	109	191	145	101	177	114	190	90	210	108
GGGGTTTAAGGGACTT	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TGCTCGTTTTTTTAAA	ref_2037_negative	22	66	37	27	46	23	50	16	83	23
GCTTCTGAGTTGTGGT	ref_2037_negative	31	52	31	27	59	29	60	28	61	19
ATTCGTCTATGCACCC	ref_2037_negative	64	134	84	63	136	68	144	64	119	72
CTCACTTAAGGTACAG	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TGTTCTCGTAGCCCCC	ref_2037_negative	0	0	0	0	1	0	0	0	0	0
CCTAGTTATTTGGGTT	ref_2037_negative	12	25	10	5	20	13	19	7	23	3
AATGAGTACCCCAGGT	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
ATTCGTACGCCTTGAC	ref_2037_negative	24	55	30	23	47	21	56	17	51	7
CAGGTTTGTGCAATAC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
GGTCTCCAGTAGTAGC	ref_2037_negative	47	98	35	25	82	32	100	12	99	28
GATTCGCGTCAATCAT	ref_2037_negative	5	8	7	11	8	7	13	6	13	9
TGAATCGCCGCGGCTA	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TGAGCCGGTGGCCACT	ref_2037_negative	19	76	43	27	47	21	61	25	54	25
TATAAAACTACGGGTT	ref_2037_negative	7	21	13	6	23	11	24	15	22	10
TCAGCAGCATGACCTG	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
GTGACATTACCGTGCG	ref_2037_negative	21	57	40	28	77	24	53	21	82	17
GGCTAATGATTAGATC	ref_2037_negative	35	82	36	36	81	41	89	45	99	41
TACCCACGTTATGCCG	ref_2037_negative	9	25	9	6	18	11	18	13	21	6
TTCTTGATCTTGGCAC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TTGCATTTCTGTACGC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
CTGAGAAGATCGCTGA	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
CGCTCATTTTCTTCGT	ref_2037_negative	19	56	38	32	50	32	36	29	50	36
CAGGGTGTCTTTATCA	ref_2037_negative	8	18	6	8	18	3	19	0	12	4
TCGTCCACCGATTTCC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
ACAGATGATTAACCGG	ref_2037_negative	35	64	44	34	49	43	70	41	52	19
TTGATACTTACGCATC	ref_2037_negative	3	14	3	4	14	0	9	5	19	1
ATCCGGTGCCATGTCC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
GCGTTTATTTCCGTTG	ref_2037_negative	38	88	35	57	83	38	97	37	75	30
CCGACAAGAAATAGTT	ref_2037_negative	18	35	14	9	22	12	29	12	30	18
TCACTTTAGTACGTGT	ref_2037_negative	8	19	13	11	22	13	17	10	21	7
TAGATCTTTTAAGCCA	ref_2037_negative	48	91	59	43	103	38	114	35	132	44
TGTCAGTGGTATCCAA	ref_2037_negative	15	28	16	9	34	13	23	8	41	9
TTCTAACCACGTCTCG	ref_2037_negative	18	41	20	22	48	22	38	21	45	19
TCCTTCTTCTGTGTCT	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
GTCTGCAGAGTAGTGC	ref_2037_negative	8	10	6	8	9	1	27	13	15	9
TGACGGAGCATGCATT	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TTTATACCACTAACAT	ref_2037_negative	61	104	64	60	90	54	99	58	97	62
TCGCCCTCGCGGTTTC	ref_2037_negative	17	33	33	21	42	20	35	20	61	13
GTTAGCTATGCCTTAG	ref_2037_negative	31	30	22	18	48	16	41	19	49	14
ATAACATTTCATTTTT	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TCAGGGCTCGCTCTAC	ref_2037_negative	93	170	106	94	178	68	187	85	174	94
ATGCCTGGTTGAGTGA	ref_2037_negative	17	13	10	14	27	10	23	6	34	8
GAAGTGCCAATTTAAG	ref_2037_negative	33	56	28	40	71	28	61	28	47	23
TTTACGATTTTGCGAG	ref_2037_negative	36	59	56	43	59	58	79	29	51	43
GCTCTTCCACGATCAA	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
ACAATCGGCGTGGTTC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
TTCCAAGCATGTCCGA	ref_2037_negative	9	21	18	11	26	4	20	10	25	11
TTAGTTTTCCCTCAAG	ref_2037_negative	18	33	24	21	35	13	41	16	34	15
GTGTTGTGGTGTCTTA	ref_2037_negative	37	104	48	38	115	50	109	45	95	44
CAATACATATCGCTTA	ref_2037_negative	27	26	30	20	40	17	29	9	32	13
TGAATCCATATGATCA	ref_2037_negative	6	3	4	3	4	1	11	2	5	3
ATTGATGCCACGTTCC	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
ACCGTATCGCAAATTA	ref_2037_negative	0	0	0	0	0	0	0	0	0	0
CGTTCACAGGCAATTG	ref_5798_new	20	16	24	24	11	25	10	21	14	23
GGCTACGGGCCTCAAT	alt_5798_new	114	62	108	104	80	96	66	99	65	94
GCATTCTTATCGTTTA	ref_5798_new	247	180	298	233	155	229	209	226	160	209
AAATGTGTTCAATTCG	ref_5798_new	103	63	129	113	74	101	78	109	67	103
TATATATGCAATATTC	ref_5798_new	72	47	84	73	21	73	42	59	46	47
TAGCCGTGACTCACGG	ref_5798_new	51	20	56	48	26	50	27	38	32	47
TGGTGCAAGAATGGTC	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GGAGTTCGCATTATTG	ref_5798_new	145	90	164	135	90	128	91	125	113	123
CTATTTAGGGCACCTG	ref_5798_new	28	13	40	28	57	38	29	28	40	25
AAACCCACGTGATCTA	ref_5798_new	115	72	158	139	68	102	84	92	61	110
AGGTCTTGTCGCGTAC	ref_5798_new	4	21	7	18	24	6	28	14	24	7
AAGTGCCAACTCCTTG	ref_5798_new	67	37	65	72	46	46	42	44	42	38
CCGATGAGGCCGCTGT	ref_5798_new	16	8	24	16	16	6	6	11	5	13
GGTTGCGGGGTATGAT	ref_5798_new	29	15	41	34	20	25	8	27	12	17
CAGAGTCGATCAAAAT	ref_5798_new	7	2	10	13	4	16	5	14	3	9
TATGGTTCAGAAGACT	ref_5798_new	50	44	46	30	35	46	30	50	37	50
AAATAAATTTTGTTCT	ref_5798_new	48	32	51	50	36	57	30	40	33	52
CCCCTTTATCGATATG	ref_5798_new	80	37	97	87	47	76	35	80	59	74
CCATACGCCAGGCATG	ref_5798_new	58	51	69	68	52	46	40	44	49	50
TGGAGACCGTGTCTTG	ref_5798_new	32	19	31	35	23	22	35	23	21	26
TTAATTTTAGGGTGCA	ref_5798_new	10	5	16	9	4	6	7	3	4	7
TCTCAATTGATCGGAG	ref_5798_new	88	90	125	95	97	104	74	115	88	87
GGCCTTTGCAACTTCT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TCCTGGTCAACCCTTG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TATACTCCCTTAAAGT	ref_5798_new	22	26	19	17	16	14	19	16	27	14
TGGACTGGATGGATCA	ref_5798_new	104	53	121	93	65	107	65	110	67	106
GGTCAGGTATGTCATG	ref_5798_new	36	22	36	44	31	30	31	32	17	37
ATGCCTTGCATTATGT	ref_5798_new	36	22	27	22	20	19	18	22	22	11
TTCCAAATCAGGTTTA	ref_5798_new	38	31	55	58	35	43	19	49	27	38
ATTGCTCATACTTTGC	ref_5798_new	18	7	16	25	26	20	9	18	14	20
ATGAAGTTGGCTGTTT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GATTATCTAGTGAGAG	ref_5798_new	45	30	64	57	30	53	45	52	47	60
GAATGCTCCAGTACCA	ref_5798_new	14	7	18	10	7	12	9	10	14	7
CCTTAACAGGCTGCAT	ref_5798_new	44	34	78	54	33	57	44	48	28	42
CTATACTGGACACGGT	ref_5798_new	16	9	21	9	11	11	7	10	13	7
TGGTTTGAGACTTGAT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GTGCGGAGCCAACAAG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TCAGATTTTGCCGTAC	ref_5798_new	140	95	156	108	104	133	91	115	98	156
AGGCCCTGATTTCAAT	ref_5798_new	38	29	65	61	35	43	30	46	37	47
ACGACCCTTATCGGAA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GTTGGCCAACGTCGTA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GGCCCCACACAAGAAG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GGTTAGGTTCTCAGCG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
ACAGCGTGGGAATTGG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TTGGTAGTCTAAGCAA	ref_5798_new	22	16	20	20	13	25	24	24	12	22
TGACCGAATCATTATG	ref_5798_new	149	88	160	153	67	134	85	111	90	134
TTTACGTCACAAGCAC	ref_5798_new	43	12	25	22	17	24	17	13	20	13
TCAACGAAGGTATTCG	ref_5798_new	31	20	32	37	16	28	12	23	24	27
CGCACGTGTGGAAACG	ref_5798_new	24	14	27	17	20	30	21	22	14	18
AGTGGTCCTTTGTTTC	ref_5798_new	0	0	0	0	0	0	0	0	0	0
CGACCTCTTCGGACGT	ref_5798_new	104	88	140	116	69	97	62	101	80	100
GCCGCCGGCACTTGAT	ref_5798_new	0	1	5	0	1	4	2	1	1	0
TCAGGGCCGGACGGCT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GGGGTTAGGAAGTTCC	ref_5798_new	175	116	215	182	143	186	126	189	95	160
TCGGATTTGACTTATG	ref_5798_new	108	68	103	71	77	82	66	100	76	95
TCCTTATGTCTCAGGC	ref_5798_new	107	74	149	115	89	104	79	121	86	117
CTTGTATGCTTTATGT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GGGACCTTTGGATCGA	ref_5798_new	52	31	68	54	23	51	26	51	27	37
CTAGCGTAATTCCACG	ref_5798_new	42	35	63	56	46	49	53	48	36	60
TACTCATAGACTGGGT	ref_5798_new	93	56	109	80	68	85	65	73	53	72
TTTGGATTTATTCCCT	ref_5798_new	32	17	32	40	28	46	30	41	19	30
GAGGTAATTTCTTGCC	ref_5798_new	66	35	88	50	29	62	33	55	23	68
TACCCGTCAATACTAT	ref_5798_new	17	41	26	13	46	18	65	22	58	14
TCTTTGTTCTCGCTTG	ref_5798_new	17	3	32	22	12	19	5	15	16	8
TGTTCGACGTTAGTCA	ref_5798_new	32	5	34	31	26	23	25	23	18	25
GTGTGTTATCACTACA	ref_5798_new	15	13	27	18	14	19	11	19	14	19
GTGTTACAGGTTACCC	ref_5798_new	67	30	66	59	40	42	35	48	30	43
TTATCTCGTTTTGTGG	ref_5798_new	194	135	230	228	134	201	156	170	140	172
ACTCCGTAATACTTAC	ref_5798_new	3	67	3	0	64	2	55	2	56	4
TGGCTCCCGGGAAACA	ref_5798_new	20	25	24	21	21	17	18	27	18	24
CCCGTAGTTCCACACT	ref_5798_new	258	210	290	254	236	236	213	227	244	220
CAGGTCAGTTTACGAT	ref_5798_new	95	75	91	98	60	77	60	92	45	97
TGCATTCCTTTCCTCT	ref_5798_new	6	2	6	11	7	13	7	8	1	4
TAGAATTCGATATCGA	ref_5798_new	454	293	594	507	307	470	289	435	303	422
GACCGTTTTCGGACAC	ref_5798_new	54	43	76	59	50	74	31	41	35	55
ATTGGGGTACACGATC	ref_5798_new	172	138	224	189	147	206	117	154	146	183
GTCTGGCCTCGCAGGT	ref_5798_new	67	43	86	62	59	58	48	49	53	58
TGCTAGTCTTCAGGCA	ref_5798_new	55	41	69	77	52	71	38	58	45	73
GTCAACGAACTAAATG	ref_5798_new	4	2	4	2	10	10	5	4	9	3
TAAACATGTGTGAGCA	ref_5798_new	94	62	89	90	71	94	74	90	53	78
CTCGCCCGAGGTTACA	ref_5798_new	52	36	50	51	32	40	37	40	43	46
TGGATCATTGGGGACT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GCTTAACAATGTACAA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
CATCTGGCTTTGCCTA	ref_5798_new	27	28	38	37	19	32	25	25	18	31
TCAGAATTGAAGGTCC	ref_5798_new	32	22	34	38	18	39	17	26	30	30
TCATGAAAGTAAAACT	ref_5798_new	52	35	69	54	32	52	42	69	41	57
TCCCTTGGTTCCTCTG	ref_5798_new	39	36	51	39	24	37	30	44	23	28
GAAACGTAGGAGTTGA	ref_5798_new	63	37	74	59	37	53	31	49	31	55
CGTATTGACCGCACAG	ref_5798_new	130	120	130	149	104	136	114	123	131	113
GGCTTCTTTTTCGTCC	ref_5798_new	63	38	93	74	39	65	38	51	31	74
TTGGTGGTAGCGTGCG	ref_5798_new	154	75	163	135	104	140	94	137	95	129
CGTCAGGTGCCAGGAA	ref_5798_new	55	29	71	57	23	48	26	43	27	70
GTTTAGTGGCAATGTC	ref_5798_new	25	18	37	26	23	29	18	22	25	37
TGCACCGTCCGCGTCG	ref_5798_new	46	22	57	53	28	47	20	57	37	52
ATCGGTCTGTAATGTG	ref_5798_new	4	11	5	4	7	2	12	3	6	1
AGATGACCGCATGTAA	ref_5798_new	4	5	5	1	3	2	3	2	5	2
GAAGATTCAAAAGTCC	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TCCGATTGTTGAGTAT	ref_5798_new	4	2	5	8	4	7	6	4	3	6
TCATACCACGACTGTG	ref_5798_new	92	74	128	107	65	101	78	87	94	83
CACTGCTCCGCCCTAA	ref_5798_new	84	78	136	83	84	86	55	92	78	88
TCGGCGGCCCCGAAAT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TCTTAGGTCTTAGCAT	ref_5798_new	81	64	87	81	68	72	66	68	60	75
TTATTATGCGACATCC	ref_5798_new	64	48	76	52	36	51	37	61	40	43
ATGCTCTTTGCATATT	ref_5798_new	31	18	34	35	26	32	14	33	29	30
GTGTCAGGACACCTAC	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TTCTCAACGAAAGGGA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TCTCGCAAGTTCTCGG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GCCAATTCTGAGCGGC	ref_5798_new	69	64	113	91	60	76	52	95	53	72
TTGGATATTCATGTTA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GACCTACCTATTGTGG	ref_5798_new	24	23	24	28	26	23	28	35	22	27
GGGTTACTTGCACGGG	ref_5798_new	19	3	28	9	5	22	10	13	9	16
TTTCGAGTAGTCCTGA	ref_5798_new	59	26	66	52	24	60	41	53	27	46
TTCTCATAGTTAAGAT	ref_5798_new	34	20	31	46	14	23	14	30	22	24
CAGTCTTATCTCTAGA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
GTACGTACCACTGTCA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
AAGCGTTATTCTGTCT	ref_5798_new	49	23	39	39	20	26	31	36	23	36
ATTCGTGTACCGTCAT	ref_5798_new	0	0	0	0	0	0	0	0	0	0
ATGAGTTGGTACGTTC	ref_5798_new	4	3	1	4	3	1	0	0	0	7
TGGATTCGATGAAATC	ref_5798_new	11	10	15	8	7	22	5	13	6	14
GTTCTCACTTGAGTCC	ref_5798_new	4	2	3	3	0	1	1	1	3	2
ATTCCTGGGTTACCAC	ref_5798_new	14	14	32	21	14	17	11	17	17	17
TTACCTCGAATGTTGC	ref_5798_new	125	107	118	121	76	98	96	100	110	118
TTCTTCCCGATATTCG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
AGCTCATCATGTGATA	ref_5798_new	68	42	78	63	34	77	44	64	46	66
GAGCCTGTGGGCCCCT	ref_5798_new	105	71	153	145	69	120	79	104	73	103
TCGATTCCGTCGCGAC	ref_5798_new	68	49	79	78	44	68	62	65	52	54
GTATCCTGCTCTTCCG	ref_5798_new	107	78	126	110	60	97	69	109	68	92
TTCCTTTTACCTTCTA	ref_5798_new	0	0	5	1	1	1	2	0	2	5
TGCGTATCTTAAGCAC	ref_5798_new	310	174	336	328	193	305	200	306	220	263
ATGGTTCGTTCGAACT	ref_5798_new	118	100	141	117	91	107	123	127	93	94
TATGTATGTTCGAATC	ref_5798_new	11	9	16	7	5	11	5	9	9	11
TACACCTTTAAGGGGG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
TGGTGGCCAGACGAGT	ref_5798_new	11	5	5	10	13	8	8	13	5	8
GTCGATAGGAAATTTT	ref_5798_new	104	55	138	107	55	110	74	89	74	100
AATGTCAACAGCCACG	ref_5798_new	96	66	130	122	84	100	79	107	74	106
AATTGCTTCTCTCAGG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
CACTACTTTAATTTCA	ref_5798_new	0	0	0	0	0	0	0	0	0	0
ATTCCCGGTGGTAATG	ref_5798_new	101	67	107	92	62	92	64	73	58	71
TGGCCCACGCCCTTCC	ref_5798_new	2	0	0	0	0	0	2	1	0	0
TGCCCTTTAACGATTT	ref_5798_new	4	3	5	2	1	5	4	2	3	4
TGACCATCACCGTTAG	ref_5798_new	348	216	394	361	254	342	214	334	212	306
ATAAAGCTCAACGACG	ref_5798_new	0	0	0	0	0	0	0	0	0	0
CTATTTAAGAATGCAG	ref_5798_new	160	85	199	144	102	123	100	147	122	123
AATAACGCTCTCTATC	ref_5798_new	110	66	111	106	75	94	63	94	58	99
GCTCGGGATTAGACTG	ref_5798_new	32	21	24	33	25	28	19	25	15	20
TTGAAGGGTACTCGGT	ref_5798_new	126	109	157	139	94	126	89	135	100	118
CGGTGCGAGTAGATTA	alt_618_RC	25	8	13	20	4	19	8	26	9	12
GAGAGCCAGATTCAAG	alt_618_RC	0	0	0	0	0	0	0	0	0	0
CTATGTCTTGGTGGGT	alt_618_RC	55	15	72	59	22	53	27	48	31	51
TGTGAGACCAGGTACC	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GCGCGCTCCGAACTTG	alt_618_RC	108	38	121	78	42	86	32	94	34	89
TAATGGTAGCATGTGT	alt_618_RC	3	3	6	4	1	4	2	3	3	2
CTGTCTTAGCATTCCA	alt_618_RC	32	20	35	25	14	22	19	21	6	16
TCTATAGCGTCATTAT	alt_618_RC	49	20	45	23	23	34	21	21	23	36
GTGCCCTGTAGCCCGT	alt_618_RC	93	27	93	81	47	84	22	83	33	76
CATTGCACGGCCATTG	alt_618_RC	47	11	57	46	20	38	29	58	16	46
TTTCTGTAGTACAGGT	alt_618_RC	138	46	195	149	45	145	69	150	50	129
TGTTTGCCTCACGTTC	alt_618_RC	27	6	34	36	14	21	12	29	16	23
CCCGGGATTGCTCGTG	alt_618_RC	41	12	53	43	19	33	18	27	21	42
TTAACCCCCTTATCTT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
TAGTTGAACAGGATAG	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GGGAACCCCTCCACCC	alt_618_RC	0	0	0	0	0	0	0	0	0	0
TCCTACCCTGCCCTCT	alt_618_RC	15	7	23	19	3	30	7	19	11	20
GCATCTTCTTTCTTGT	alt_618_RC	57	12	80	48	11	46	12	54	10	26
TTTGAAAGGCTTCTAG	alt_618_RC	38	19	49	37	16	33	16	30	8	41
TTGGTATCATCGCTCG	alt_618_RC	46	21	88	79	25	58	16	66	24	58
CATTACGGTATTTAAT	alt_618_RC	149	61	182	162	60	158	65	142	61	113
ATCGCTTAGTTTAACC	alt_618_RC	6	2	8	13	5	7	5	7	5	7
GCCATCGATACACAAA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
AGGCCTGTATCCAAGT	alt_618_RC	8	10	16	26	10	12	12	11	9	16
TGAAGATTAACTGCTT	alt_618_RC	56	30	74	43	22	60	27	57	33	60
TTCTCCCTAAATATAG	alt_618_RC	0	0	0	0	0	0	0	0	0	0
AGCTTTCAAGGTTTCC	alt_618_RC	0	0	0	0	0	0	0	0	0	0
CTCCTGTGATTGCTAA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
ATAGGTACAACCTCCT	alt_618_RC	57	25	55	51	16	60	28	35	20	36
GGTCCCTTTGTGGTTT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GTGTCATGTTGCCGGA	alt_618_RC	29	8	34	19	11	17	3	20	12	22
TTTCCTCAGTTGTAAG	alt_618_RC	51	27	71	62	27	57	26	57	26	51
AGCTTGATCGGGACAT	alt_618_RC	361	150	407	397	124	354	159	373	153	327
GTCGTCTCTCGTAATC	alt_618_RC	228	79	236	186	86	171	94	215	82	205
GTGTACGCTTTGAGCC	alt_618_RC	4	0	6	7	0	5	6	7	0	4
TCCTGATATTTACTTT	alt_618_RC	34	15	22	35	12	34	21	36	19	25
TAATGCACTTAGTCTA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGGCTCAATGAC	alt_618_RC	159	60	198	156	75	116	74	133	78	121
CCCAAAGGGCCTAGAA	alt_618_RC	33	16	41	40	26	45	19	39	22	44
AGGTGTATCTTTCCCG	alt_618_RC	40	28	49	52	17	54	16	42	25	43
GCTCCTTTGTTCTACT	alt_618_RC	15	5	12	16	2	14	0	13	3	10
ACCCGCCCTGGACTAT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GTTTGTCAGAAAATTC	alt_618_RC	0	0	0	0	0	0	0	0	0	0
TTTCTGGTCCCTTCTC	alt_618_RC	11	5	19	14	6	18	8	7	8	15
CACGATTGCATTCAAG	alt_618_RC	52	20	53	56	20	51	14	33	17	39
CAAAGCTACTTTAAGG	alt_618_RC	56	30	82	62	26	59	46	57	62	49
ATATATGGCGCGAGTA	alt_618_RC	34	15	35	43	9	27	8	48	10	39
GTCATCACATCACCAC	alt_618_RC	49	14	77	59	29	50	18	71	30	49
TGTGTCCAGGGTACAA	alt_618_RC	135	44	139	119	51	117	59	119	76	114
ATTCCGAACTGTTCAC	alt_618_RC	11	2	23	13	4	10	7	9	10	15
TATCTAGGGTGAATTT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
ATCTGGGATGGCTGTG	alt_618_RC	78	31	101	68	44	82	44	74	34	65
TTGGAAGGTGGGGCAA	alt_618_RC	7	2	5	7	2	7	0	6	3	3
ACTCCCCTAGATCCCT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
TGGCGCTTGAGGATGA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
AGGTGTCATTTCGGAT	alt_618_RC	98	42	109	106	41	83	54	104	49	100
GCTCTCAGGTCCCATG	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GGGAAGGCCAAGTACT	alt_618_RC	27	7	44	24	8	27	6	26	11	12
AAACTTGGCTGTCGTT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
ACGTCTGCGACCATGC	alt_618_RC	22	6	26	22	13	22	7	18	13	28
TAAGTACCTCCTTTTT	alt_618_RC	1	7	4	6	4	3	9	2	2	2
ACCTGATGCGGTATTG	alt_618_RC	66	26	78	87	23	68	23	62	29	58
CACTGTTGGAGGCTCC	alt_618_RC	9	8	9	9	6	11	6	16	7	20
GATCCTAGTCGGCTTG	alt_618_RC	143	60	174	151	57	157	64	134	53	106
GAGGTTTCCACGGTGA	alt_618_RC	10	3	22	20	2	24	4	19	5	18
GTCCAGGTTCTCTCAA	alt_618_RC	49	16	52	36	22	44	21	40	20	31
CATTAGATGCCGAACC	alt_618_RC	9	4	10	7	2	10	6	7	4	11
AGTCGTTAATTTAAGT	alt_618_RC	14	6	26	16	3	12	6	7	8	11
GTTCCCCTGGTTATCT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
TTCAAGTATTGCGAAC	alt_618_RC	13	12	38	23	3	23	6	17	7	20
CGCGTCACCTATAATT	alt_618_RC	34	17	48	53	20	36	18	55	21	45
ATATACAGGTCATATG	alt_618_RC	0	0	0	0	0	0	0	0	0	0
CAACCCCATTGGGTCA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GGCCTAGGCATTTCTA	alt_618_RC	134	58	197	147	61	133	65	132	48	134
TCCCGGTTGACCGTGT	alt_618_RC	9	17	27	19	12	12	13	31	13	15
AGTCATTGGGGTAGAT	alt_618_RC	5	2	3	3	1	5	0	2	1	6
AGACTTCGACATATCG	alt_618_RC	38	10	46	42	20	31	19	39	13	40
TCGGATTTAGACGCTT	alt_618_RC	1032	416	1125	932	471	939	399	899	448	824
AATCATCCTGATACCA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
ATTTAGTCTGTGTTGG	alt_618_RC	0	0	0	0	0	0	0	0	0	0
GTCTCATGTCCCATTT	alt_618_RC	122	46	157	140	38	126	43	118	33	109
GACTTCGTGTTAACCC	alt_618_RC	28	7	38	29	10	26	11	28	9	23
GCTCGGCCTGTCGCTT	alt_618_RC	0	0	0	0	0	0	0	0	0	0
CGAGGGTTGACTATGT	alt_618_RC	9	2	14	4	1	4	6	9	4	10
CATCATGCCAATCTTA	alt_618_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTTTGTCGATTT	alt_618_RC	47	20	53	41	24	61	19	53	19	56
GGACTTTTTAGAGTAT	alt_618_RC	101	47	124	119	43	103	41	97	50	92
AGTGTACGACTATTAC	alt_618_RC	12	15	29	15	7	13	10	18	5	23
TTATGGGAATTACGTC	alt_618_RC	30	14	24	36	22	35	23	30	16	28
TATGAACTGCTGTGAT	alt_618_RC	38	18	35	37	16	32	14	43	14	40
TTTTAGTAGAGTTTCC	alt_618_RC	0	0	0	0	0	0	0	0	0	0
TCATCTGCAGGGGGTA	alt_618_RC	60	27	75	54	31	51	24	51	31	52
CCGCCGTGCTTAATGC	alt_618_RC	0	0	0	0	0	0	0	0	0	0
CTCGATCTTGGGTTAG	alt_618_RC	55	19	54	62	14	47	27	46	25	49
TCCCGAGAGCGTACTA	alt_618_RC	6	4	7	1	0	4	1	3	5	4
GCCAGTTTGGAGGTAA	alt_618_RC	6	1	6	5	3	6	0	2	1	7
ACCCCATAATATGTGA	alt_618_RC	44	18	36	46	11	33	11	33	12	32
TGCATTGGGCTTCACC	alt_618_RC	102	35	125	97	31	84	41	92	60	75
AGTTTACGCGGACCGT	alt_618_RC	20	10	22	21	4	10	10	6	5	14
CGGCGTCGTTATCCAG	alt_618_RC	23	14	34	19	7	19	9	30	11	16
AACTTACCGTTTTTGT	alt_618_RC	9	31	19	9	43	17	29	9	44	13
GAATACCCTTATTCGG	alt_618_RC	35	17	37	26	9	26	18	31	23	33
TTGATCGGCTGAAGTC	alt_618_RC	0	0	0	0	0	0	0	0	0	0
ATACGCTTGTATCTGG	alt_618_RC	171	55	187	168	69	145	43	143	73	135
ATGATCATGATCAAGC	alt_618_RC	66	26	91	82	29	47	30	59	27	74
AAAATCCTCCCTAGCA	alt_618_RC	17	6	16	17	6	12	8	16	13	8
GTCCATGACGCTGACC	ref_5949_new	19	19	22	19	28	20	29	21	18	18
TGTACGCCCCTATTTT	ref_5949_new	4	4	2	1	2	0	0	1	3	0
CTAAAGCCAGTCAGTT	ref_5949_new	6	12	10	10	12	9	19	12	15	11
AGTGCGGATCCACGCA	ref_5949_new	12	11	18	15	17	13	17	11	17	17
AGTTAGGTATCGTTTT	ref_5949_new	8	5	5	6	12	11	12	4	11	5
TTCCCTCATAAACTGC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TTATGCCCTAGGTCGG	ref_5949_new	16	51	29	26	16	22	22	11	34	19
TTACCTGCGTGGACTT	ref_5949_new	0	0	0	0	0	0	0	0	0	0
CGTGCCTTACCATAGA	ref_5949_new	0	0	0	0	0	0	0	0	0	0
GTGTATTAATCCTAGA	alt_5949_new	23	31	18	13	23	6	15	12	19	20
CTGCTTACTCTTGAAC	ref_5949_new	0	1	1	0	1	1	2	0	0	1
TGTCCGAAGCTTTACG	ref_5949_new	39	55	54	52	53	45	65	41	47	40
GTACTCCCGTTGGGGT	ref_5949_new	10	26	13	5	41	5	33	9	27	12
CATAAGGCGGGATGAG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
AATGTGTGAACTCTTA	ref_5949_new	7	7	14	6	10	7	10	2	10	7
TCAGGTATGTGGTTCG	ref_5949_new	15	7	4	4	7	8	9	6	7	2
CACTATCGTTGTTTTC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
CCCGAACCTGACGGCG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
GCTCCTCGCTTTGTGC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TGATTGTCGATTGTTG	ref_5949_new	5	6	4	8	5	9	4	5	5	3
ATGCCCCGAAGGATCG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TCAAAATTTTATAGAT	ref_5949_new	48	53	53	35	65	38	54	36	52	31
CATTCGCCCATGCCGG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
GCACCATTTCCTCATT	ref_5949_new	15	17	23	16	23	22	21	15	21	15
GTTTTGTATCTACTGC	ref_5949_new	7	10	5	3	9	1	17	9	4	3
ATCCGCATCCGCCTCG	ref_5949_new	2	9	5	4	7	4	8	3	7	3
CCCATGTCGTATTTTG	ref_5949_new	48	55	45	41	42	34	45	26	56	24
TTGTTTCGCATATAGA	ref_5949_new	0	2	4	3	4	2	4	2	2	2
GATTGTCGCCCGCTAT	ref_5949_new	0	2	2	1	5	1	3	2	3	1
GTTACCTCGAGGCACA	ref_5949_new	35	37	22	30	35	15	50	35	49	23
ACGTGTGTCTCGACAT	ref_5949_new	0	0	0	0	0	0	0	0	0	0
CGTAGGTTACGTCGGG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TATTCTAGATTGTTTC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TAACGCCGCTAGGACG	ref_5949_new	1	0	0	0	0	0	0	0	1	0
AGTTACGTGTGCTCGA	ref_5949_new	0	0	0	0	0	0	0	0	0	0
CAGAATGCGGCAAGGT	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TCGTTCTTGTATTCTA	ref_5949_new	19	14	23	18	11	15	25	15	25	16
GATCTAATAATTAAGC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TTGGCGCAGATCTTAA	ref_5949_new	12	13	8	12	15	10	24	5	18	10
GCTCCCTCAGAGGAGG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
AAACTGGATCTTATTA	ref_5949_new	30	65	46	38	46	45	50	45	51	40
TTTGCGCGTAAAATTA	ref_5949_new	9	7	6	9	20	3	2	11	7	5
TCAAGTGAATACGATA	alt_5949_new	65	122	81	60	126	57	119	58	130	54
GATGGTCGGATCGGGC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TTGCCTATTTTAAATG	ref_5949_new	14	16	22	16	20	10	13	10	16	6
CTGTCTGTTCAGCTTT	ref_5949_new	39	43	39	29	42	39	39	27	50	20
CAGCGATGGACACGGC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
CTTTTGACTGCCCGTC	ref_5949_new	17	32	28	17	20	10	39	20	37	16
CTGTAGCTCACGAGAA	ref_5949_new	17	33	20	26	32	27	30	27	35	19
TTGTCATTTCCCGAAC	ref_5949_new	9	15	17	16	12	7	25	16	26	11
TGTTGGGAGCGCTTCA	ref_5949_new	35	58	31	37	44	43	51	31	56	43
GTTCTTTTTTACCCCG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
CTTGGAACATCTGGGT	ref_5949_new	87	110	116	88	114	72	106	79	111	87
TGAGAGTCGCACACAG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
AGTACACATAATATTA	ref_5949_new	14	15	15	16	25	16	14	13	27	12
GGCCCAACATCCGGTA	ref_5949_new	11	6	12	9	14	13	10	3	8	11
TATTTGATCATGATAC	ref_5949_new	47	68	54	41	79	43	76	40	87	49
GCTCATTCCTGTCTCG	ref_5949_new	0	0	0	0	0	0	0	0	0	0
ATCTTGTTGCAGTTCG	ref_5949_new	3	5	3	7	11	3	6	5	17	7
CCTGCTATGGCTACCT	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TAGTTATCGGGGCGCC	ref_5949_new	38	75	50	34	77	40	70	39	78	38
CAACGTGAAGTTATCC	ref_5949_new	0	0	0	0	0	0	0	0	0	0
GTTCGTGTGAGATTTT	ref_5949_new	0	0	0	0	0	0	0	0	0	0
GCAAAGCTGTTTCGCT	ref_5949_new	0	0	0	0	0	0	0	0	0	0
TTTTGTGAGTGCTCGA	ref_5949_new	0	0	0	0	0	0	0	0	0	0
GAAGCTCCAGATTACG	ref_5949_new	59	67	76	74	97	59	97	69	85	43
TTTGGATTATATACGT	alt_5981_new	35	74	47	41	57	38	55	41	70	39
TGCTATGTTCATTTTG	alt_5981_new	92	112	151	110	103	95	107	99	121	90
TCATAGGTCTCATAGA	alt_5981_new	33	36	38	28	42	42	25	18	38	33
TTCCCGAGGTCCTTCG	alt_5981_new	7	12	11	4	9	4	6	4	9	3
GTATGCTGATACGAAG	alt_5981_new	29	35	41	34	19	32	39	24	35	24
GAGTTCATGTGAAGCC	alt_5981_new	4	1	8	5	6	4	2	6	7	2
ATCCGGGGTTCGGCAC	alt_5981_new	14	14	12	3	18	14	23	8	15	9
TCGATAGGATTGAAAT	alt_5981_new	16	13	21	18	16	14	22	16	22	26
AGTACATTCTCTGAGC	alt_5981_new	27	26	28	31	19	22	25	22	30	20
TTGCTCGTAAATAAGC	alt_5981_new	0	0	0	0	0	0	0	0	0	0
TATCCGCCGGTTAAGT	alt_5981_new	25	40	29	22	35	16	26	12	41	24
AACACGCCCGTCATAC	alt_5981_new	3	8	4	3	8	3	14	1	5	0
AAATCGTCCTCAGCAC	alt_5981_new	59	77	86	68	85	63	89	51	66	44
GCCGACCGACGTTTTC	alt_5981_new	156	217	192	180	209	186	222	153	244	163
AACCTGAGGGGACTGC	ref_5981_new	0	0	1	0	1	0	3	0	5	0
CTTTGGCATAGGTACC	alt_5981_new	0	0	0	0	0	0	0	0	0	0
AAAGAAGTCGCGTTGG	alt_5981_new	0	0	0	0	0	0	0	0	0	0
GAAACTTGTAGCCTGA	alt_5981_new	42	65	70	54	65	65	72	44	69	58
GGCTCCACGATTGTGA	alt_5981_new	16	25	21	20	26	18	24	19	15	13
TAGTCGTCAATTTGTC	alt_5981_new	8	23	9	11	16	10	13	7	11	8
GTCCCGTTTCGTGTAT	alt_5981_new	26	30	21	17	36	23	47	23	43	26
GCAACCTAACCCGCTG	alt_5981_new	36	39	46	44	41	28	44	35	50	22
TTGTACCGGCATATTT	alt_5981_new	22	14	17	9	12	10	25	17	16	12
TGGCACCTCTCTCCAA	alt_5981_new	32	32	43	38	47	37	28	44	41	34
TACCCGCGCTCCTAAA	alt_5981_new	14	33	35	27	40	26	24	19	36	14
GTTATCATTTTGATTT	alt_5981_new	0	0	0	0	0	0	0	0	0	0
TTATGGTTATTTGACT	alt_5981_new	7	16	10	9	10	10	16	5	13	8
GCATCTTTGTCAGTAG	alt_5981_new	4	4	2	4	3	4	2	0	2	3
ATCCTAGTAGGGTATC	alt_5981_new	25	41	31	24	41	23	31	20	20	31
GAGCTGTGTCACCCAC	alt_5981_new	32	26	31	23	28	31	32	27	43	24
GTAAAGTGCGCTCTTG	alt_5981_new	28	23	18	21	19	27	21	17	27	18
TAAATTTCGAATCCAA	alt_5981_new	38	60	47	54	36	38	39	35	59	29
GCTAAAAACCCATCCG	alt_5981_new	6	12	13	7	14	11	8	10	11	2
AGTTTTCCCGCTTGTG	alt_5981_new	110	138	129	117	158	113	164	112	180	106
TAGCTGCCTCACAATT	alt_5981_new	0	0	0	0	0	0	0	0	0	0
AGGCTGGGGGTTTAGA	ref_5870_new	87	64	87	69	65	94	66	84	88	74
GCGAGCACTTTACCAG	ref_5870_new	54	31	58	31	40	55	44	58	37	46
GCGTAGGCCCGCCCAC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
AGGGAGCCAATCCACT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GCTACAATCGTGCTAG	ref_5870_new	123	148	155	117	122	139	146	129	120	120
CGTACACGCATCCGTC	ref_5870_new	1	4	0	0	11	2	5	1	6	1
CATCTTACGGGCGGTG	ref_5870_new	112	67	147	91	89	107	99	104	102	106
TGAGCTGCGTCTCCTT	ref_5870_new	253	181	306	212	207	217	232	236	235	258
TTCAAGCCTGTTCTGT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CGTACCTCGGAACAAT	ref_5870_new	61	60	67	75	64	55	62	75	48	56
AGTGTATGTCTAGACG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GGCGTAAGCAGGATAT	ref_5870_new	14	17	21	12	15	12	16	14	10	25
CGGTGGTAGGGAGGCT	ref_5870_new	11	8	13	10	8	9	7	12	11	6
CTATTCGCTATCGCAC	ref_5870_new	8	22	5	2	10	8	12	6	17	8
TTTTCTGCCAGGGTTG	ref_5870_new	29	12	23	21	15	27	20	20	21	23
TTAAATGCCCGTAAAT	ref_5870_new	6	14	9	4	6	4	7	6	1	3
ATCGTAAACGCAGACG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TATGCACGGTGATTAA	ref_5870_new	50	34	47	34	40	46	31	42	42	40
GTACTCCAGACCTCAA	ref_5870_new	7	11	19	9	18	11	11	17	13	16
GGCAATTTAAAATTCT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CTCCTTCTCGCCCGGG	ref_5870_new	34	31	42	28	42	28	34	29	44	33
TCCCAGGTCGACCGGT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CGGGTTGAGGTCAGCC	ref_5870_new	20	27	19	24	30	23	17	27	21	29
TACGACTAATAATTTT	ref_5870_new	33	28	30	20	33	31	22	27	29	24
TGTTGACAGTACCCGT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TGTTTTTGCTCCTTTG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
AGTTTTAGCGTTTCAA	ref_5870_new	94	74	82	49	78	61	81	42	76	59
AGGTTATGTTTATAAT	ref_5870_new	29	16	27	20	17	24	20	17	30	19
CACTAGGGGCGATGGC	ref_5870_new	18	35	15	24	25	18	22	26	35	17
TTCTTTTGTGTGGAGG	ref_5870_new	5	3	9	8	5	3	4	5	5	6
TGCATCACCTGCCTTT	ref_5870_new	67	44	78	43	64	54	58	47	57	68
TTGCACGACCCAGCTC	ref_5870_new	64	65	74	56	49	73	79	63	65	76
TTTTAGTTCGTCGCCG	alt_5870_new	2	2	3	2	1	0	0	3	1	0
ATCTTGTGGCTTCCGA	ref_5870_new	30	25	28	18	31	28	26	29	31	20
TTTTTTGACTGGACCT	ref_5870_new	13	13	15	8	13	15	14	15	17	14
TACGAAATATTTAGGC	ref_5870_new	19	9	11	7	6	5	14	13	13	12
TCCCTACAGCCTACCA	ref_5870_new	33	35	30	22	34	39	46	32	50	22
TGCCCTGGGGTACGTT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TCGCGTGCCAGCCCGC	ref_5870_new	45	34	56	37	34	42	39	28	38	39
TTGTGATCTTTTTTGA	ref_5870_new	32	48	24	30	22	31	39	29	27	27
TTTAGATGGTTCCCCG	ref_5870_new	16	18	24	8	17	15	15	6	25	15
AGCAGTGTTGCTGTTC	ref_5870_new	4	4	5	4	2	2	4	9	7	6
CTAATATGATAGTTTC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TCGTTTGCCCTGCCTG	ref_5870_new	71	74	68	49	53	68	77	57	59	51
GACGAGTACGTTTCAC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TAACCTCTAAGCTTGT	ref_5870_new	15	13	20	14	17	17	16	25	19	10
GCATTCGACAGCTCGA	ref_5870_new	6	8	9	7	13	8	7	10	8	5
GCGTTTCGGGTAGTGC	ref_5870_new	46	46	51	37	36	34	42	34	44	27
CTCGGAGATCATTTGG	ref_5870_new	7	5	14	6	8	11	10	8	12	5
AATATACGTCAATACT	ref_5870_new	20	17	26	21	21	6	28	21	18	24
GGATTAGTCCTGTTAG	alt_5870_new	122	123	135	93	111	120	112	92	121	118
GCGTTTACTCGGCGTT	ref_5870_new	14	4	11	11	13	21	12	6	18	3
ATATCGATTGGAGTTA	ref_5870_new	0	0	0	0	0	0	0	0	0	0
AACGCTGGAGGTTACC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
AACCTGCGCTTTTGAC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GTGCATTCAAGCAGGC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CCGTGATGTAAGGATT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GCGAAATTCGATTATC	ref_5870_new	0	3	0	2	2	2	2	2	1	1
GGATTTATCAGAACTG	ref_5870_new	15	11	19	12	11	7	9	6	11	10
ACTTCACCTTGTGGTA	ref_5870_new	16	9	20	4	21	20	19	18	18	19
CTTGGTCCTGTCCACC	ref_5870_new	99	103	116	93	112	104	95	114	123	84
CTACTCTCCAAGCCAA	ref_5870_new	22	38	37	24	29	36	46	33	34	26
TATAAAAAATTTCTAG	ref_5870_new	7	12	18	11	13	4	14	13	16	9
GCCCAGGAGTTTCTGC	ref_5870_new	28	16	28	40	26	34	35	23	24	15
GCGTGTACAACGGATG	ref_5870_new	22	25	29	20	12	30	26	27	21	27
GATGCTACGAGTCAAG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
ACGATTCCTCACCTTC	ref_5870_new	76	69	70	49	54	67	66	57	67	63
TATTCTTTATCCTGGC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TCCAAGCCCTCATACC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GCGCCGTGGGTTTACC	ref_5870_new	10	3	7	1	5	0	7	5	2	1
TCGAGAACCAAAGTTG	ref_5870_new	65	62	89	74	67	59	96	61	92	63
AAAAATTCAGCGCGGA	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TCGTCTAATCGCATCG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
AAACGTCGTTATCCTA	ref_5870_new	11	13	22	16	13	16	12	9	12	9
GGGTACTTCTTTCATG	ref_5870_new	14	22	12	11	13	9	11	9	14	6
ATCCCCGCGTTACTGC	ref_5870_new	27	9	21	15	16	17	16	10	21	13
TGAGTCCTTCAACCGA	ref_5870_new	23	17	24	18	13	20	24	19	18	19
GTTTGCGTTGTCCTAG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CACTTTGCATAGAAAA	ref_5870_new	34	34	53	31	33	33	40	31	25	28
TTTTCTCGGTCTTAAC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CCCATTGGTAGCTCGA	ref_5870_new	38	26	52	34	38	32	51	34	30	43
AAGGGTTTATTAATTA	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CGCCTTAGGTCCTGGT	ref_5870_new	32	26	35	27	18	39	24	36	30	34
TTTTGTTAGACTGTTA	ref_5870_new	40	47	42	29	34	42	46	39	48	43
CGATGAGGGTGTTCCA	ref_5870_new	21	43	31	27	29	30	43	37	44	35
GTGGCGTGAACTGTGG	ref_5870_new	39	33	51	38	29	40	42	26	27	57
TCCATGTGTGATTGTC	ref_5870_new	84	56	104	57	60	82	62	59	57	68
ATTTTCGCTTACCTTT	ref_5870_new	16	31	24	13	39	17	51	11	37	17
CTCACGAGCGTTTTTA	ref_5870_new	25	19	27	12	17	17	16	18	22	19
AGGTTTTTCTACTAGG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GCTTCATACGACGTGG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GTCCGTAAGTTCCGAA	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TGAATTTGTCCACTCA	ref_5870_new	14	16	14	18	20	12	22	22	25	18
ATTCCATCTTCACAAG	ref_5870_new	53	26	49	29	35	29	23	31	37	27
CTTCCTAAGGATATGG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CTATAACCGGGCTGCG	ref_5870_new	58	74	58	47	72	48	65	52	77	47
TCGCTCCCAGCCGAAA	ref_5870_new	25	20	21	17	16	21	17	19	12	15
ATATCTTGGATAAGGG	ref_5870_new	53	40	66	55	35	56	35	44	44	40
CGCTGGCCTCTTCACG	ref_5870_new	29	43	33	33	82	30	55	34	64	23
GGTTAACCTGTGTATA	ref_5870_new	30	39	35	26	39	24	20	28	32	36
ACGCTCCCCCGTGGCA	ref_5870_new	1	48	8	0	43	4	43	2	45	2
AGGGTGCCAATCCACT	ref_5870_new	459	340	551	407	410	448	393	435	371	413
ATCTCTTCGGTAGTGC	ref_5870_new	14	16	25	16	20	21	20	9	23	11
CCAAGGTTATCAGGGC	ref_5870_new	24	16	12	20	15	14	15	10	15	16
TGCGGACCGATGCTCG	ref_5870_new	7	8	7	6	7	11	10	8	6	9
TTTCGGGGCGCTTATG	ref_5870_new	21	26	15	23	20	30	33	16	33	23
GTTCTATTTTTGGTCA	ref_5870_new	245	204	270	174	213	221	223	211	196	224
GGTGAAATGTATCGAC	ref_5870_new	11	15	21	13	19	13	12	19	11	9
TTTCATTTGACGTTAG	ref_5870_new	7	9	13	3	10	6	13	11	6	9
GAGCGTTGTGAAGCCC	ref_5870_new	25	8	14	19	15	9	20	11	12	18
TCGCCTTCTCCCCGGG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
AAGACATCTCTGTATG	ref_5870_new	75	76	78	57	89	66	97	67	82	52
GATCACGTATCTAGAA	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GAAGGCGGGGCTACGG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GGTCGGCAATGGACCT	ref_5870_new	36	40	47	33	20	45	35	28	42	27
GCCATTTGTTTACGTT	ref_5870_new	37	34	37	32	25	34	27	19	33	33
TTCTGCGATTAAGATC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GATCGCCCACATAGCG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TGGCTGATCACTGTGC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
TTTATTCCCGGACTGA	ref_5870_new	35	30	26	29	21	29	20	30	33	26
GCTTCCGCTTCACGGT	ref_5870_new	29	17	23	25	24	21	30	16	34	17
CTTCCTTGTTTGGTGA	ref_5870_new	8	11	26	10	19	17	9	5	10	10
ACTACTTGCGAGACGA	ref_5870_new	14	14	14	6	10	20	12	13	18	14
ACATTGCAGGTTCATA	ref_5870_new	0	0	0	0	0	0	0	0	0	0
ATGGCGCCGACTTCCT	ref_5870_new	10	6	12	12	6	9	8	11	9	9
CATCCTTTATTACACA	ref_5870_new	0	0	0	0	0	0	0	0	0	0
ATAAATCCACGGCGGA	ref_5870_new	22	25	33	20	17	17	30	16	22	10
TCACATCCCTTGAGTT	ref_5870_new	7	13	16	13	12	3	12	9	10	16
GCGATGTCGAATCGGG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CCTTTCTAGGCAATCG	ref_5870_new	40	47	49	40	38	35	60	20	41	25
AGTTTGTCGGTGTTAC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CGTAAAATGGCCAGTT	ref_5870_new	0	0	0	1	0	0	0	0	0	1
AAGTATGCAAGTTCGA	ref_5870_new	61	58	64	52	55	46	67	41	53	62
TGACCATGTTAGCACT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CGACTTGTCGTGATCT	ref_5870_new	62	46	80	48	56	56	54	50	70	55
CCAGATATGATTCCAT	ref_5870_new	8	5	17	16	13	10	10	8	12	13
TAGAGAACGTGCGTTC	ref_5870_new	41	43	36	35	47	44	28	31	48	23
TTTGCATGGCTCGTGA	ref_5870_new	59	43	44	44	44	50	35	62	31	34
GGAAAAATGACTATGT	ref_5870_new	62	70	55	46	90	61	80	40	63	57
TTAGTCTGGCCAGTGC	ref_5870_new	0	0	0	0	0	0	0	0	0	0
CCCCTCGCAGTGGCTA	ref_5870_new	3	3	4	1	3	2	3	1	9	2
CGTGCGCCGACAAGGG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GGTCAATTATTATGTC	ref_5870_new	28	21	21	28	15	23	17	26	19	21
ACGCTAGCATGCTGTA	ref_5870_new	28	28	27	18	26	32	31	19	34	32
ACGCTTTGAAGTAGTG	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GTCTGTTTTTATGACT	ref_5870_new	38	29	52	38	37	50	22	38	44	29
GTTCACATTCGTCTGT	ref_5870_new	61	42	85	61	40	50	48	67	64	58
TCACGCACGCTAACCT	ref_5870_new	0	0	0	0	0	0	0	0	0	0
GTGACCGCTCTTAGGT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
GTACTGTATTCCTGGA	alt_6002_new	26	66	29	30	34	20	44	16	37	26
ATCGCCCTGCTTGTTT	alt_6002_new	17	18	14	14	18	6	16	15	30	14
TAAAACCCCCACGTAG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTAAGCTTTTG	alt_6002_new	65	107	79	72	140	59	128	67	118	56
CCCGGACTATGGGATC	alt_6002_new	0	0	0	0	0	0	0	0	0	0
ACTTTCGCACTTAAAG	alt_6002_new	33	72	23	42	59	30	65	31	69	38
CATTCCTACTGTCATA	alt_6002_new	3	2	3	1	5	2	3	5	6	3
TGGACTCTCGCGTATC	alt_6002_new	91	145	106	80	150	67	151	82	201	76
TGCGCCGGGGTAATAC	alt_6002_new	25	63	31	20	67	23	46	17	48	34
TACGTTAGTACTTAAA	alt_6002_new	21	42	25	17	36	13	32	20	25	20
AGCGGTCCGGCACGAC	alt_6002_new	8	29	23	19	26	13	27	15	26	14
CATGACCAGGGAGTTC	alt_6002_new	7	16	21	13	25	7	8	10	16	14
AGCTCTGAAGTGGATG	alt_6002_new	2	5	2	1	6	2	4	3	5	6
TTTTCTTATTATGTTT	alt_6002_new	37	47	43	55	63	44	54	42	58	42
TTCATCCTTCCTACGT	alt_6002_new	27	35	23	24	34	15	33	17	53	14
ACCCCGCCTTTCAGAT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TTTTGATGTCGTCTCA	alt_6002_new	15	25	15	15	24	13	23	13	31	7
GAAGGCATACGTAAAA	alt_6002_new	63	130	85	78	91	56	117	66	128	64
CTCTCTAGAACAGTTG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TCATTTATCTCGGCTA	alt_6002_new	27	36	38	23	41	25	64	23	38	16
ATGGTCCTGCCTCATT	alt_6002_new	8	6	2	4	5	6	6	4	12	6
AAAGCTTTCCATATGC	alt_6002_new	14	18	18	19	26	12	32	9	21	13
CACGGATCCTGTTACT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TGTTTAGGTCCGATAG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CACGCCTAGGTAATTG	alt_6002_new	23	120	49	44	85	32	99	33	98	28
GCATCGTATCACTGAA	ref_6002_new	35	37	27	32	43	23	51	15	60	27
CCGCACGTTAGCCCTG	alt_6002_new	175	285	214	187	303	200	262	186	323	173
ACGCACACTTCGAAAT	alt_6002_new	41	69	47	33	106	31	69	34	92	40
CGGATTCAGTATGGTA	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CACTCAGCTAATGGGC	alt_6002_new	9	15	6	2	17	3	18	8	18	6
TTACTCCGGCCCTTAT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
ACAACACCCTATCGGA	alt_6002_new	8	25	10	8	27	16	25	6	19	13
GCCTTAAGGTCGTGCA	alt_6002_new	82	126	100	82	151	81	159	57	153	76
ACATGTCTTCATCACT	alt_6002_new	5	16	7	8	9	8	14	11	9	8
GGGGTTTCCTGTCTCT	ref_6002_new	31	58	43	32	74	39	84	32	60	18
AGCACTGTAATGATCT	alt_6002_new	7	21	9	4	12	12	20	7	4	8
CCACGTGCTATTTAAA	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TTGGAGTGGTTCTTTT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TGCACTCAGATTGGTC	ref_6002_new	16	40	33	13	35	19	30	12	43	19
CCCTGTCAGTACTTTT	alt_6002_new	26	35	17	29	32	22	47	19	60	20
CTCCAGGGAACCACCT	alt_6002_new	20	58	42	23	76	21	71	24	63	21
GAATGCCTTCCTTGGC	alt_6002_new	1	12	10	8	13	3	5	5	9	7
TTTTGACGTCTCACGT	alt_6002_new	6	9	4	13	11	6	5	2	8	3
AGCGGAGAGGGTTAGT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CTGGCTTTAAACACCA	alt_6002_new	21	33	33	18	40	19	19	15	39	17
GTTTGGTTTTATTACA	alt_6002_new	6	5	3	7	1	2	10	1	2	3
GCTTTTTGATGGGTGT	alt_6002_new	26	36	26	21	37	23	39	19	37	15
TCTGGAGTTCAACGGA	alt_6002_new	3	2	2	4	4	4	3	2	4	2
CGGAACATTCGTCCCC	alt_6002_new	15	17	8	14	17	7	18	11	17	7
CGTAGATCGGTACGAG	alt_6002_new	72	117	78	68	113	52	126	54	142	72
TCTCAGATAATCCAAT	alt_6002_new	3	4	2	1	7	4	6	2	8	0
GATCGTATGTCCCTCG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TTCTCGTATACCAAGC	alt_6002_new	15	28	6	8	22	18	32	12	23	15
TGCTTTACGCTCTTTG	alt_6002_new	26	63	47	30	66	25	56	24	58	16
GAGATCCTACAGACGC	alt_6002_new	64	76	59	46	74	39	96	45	77	39
GGCGTAGTTGCCACGT	alt_6002_new	10	23	11	13	17	6	17	10	26	10
GTTTATTGACGTTACG	alt_6002_new	17	26	20	17	21	11	39	9	18	15
GTGTGTACTCTACTAT	alt_6002_new	40	109	76	44	132	72	146	55	152	54
CTAAGTGGTACTACTC	alt_6002_new	0	5	0	0	4	1	4	0	8	1
TCACTGGTCAAAGTAC	alt_6002_new	51	103	57	50	93	32	125	40	94	31
AGCTCCGTGAATCTTC	alt_6002_new	17	33	27	27	29	15	33	9	34	17
CGGAATTCTGCTGGAA	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CCCAGTTGTTGTTCAT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
GGTTGAAGAAACTGAT	alt_6002_new	11	15	9	10	13	16	26	5	18	12
TGCATGGGTATGTCGT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTAACTCTTCT	alt_6002_new	74	113	103	85	134	67	159	69	169	65
AAGAAATACGTATTTT	alt_6002_new	16	28	16	14	18	15	19	13	52	10
CTCCTTCGTATTACTG	alt_6002_new	63	92	75	61	105	59	118	47	132	42
ACTTGCAGTCGTATTG	alt_6002_new	8	17	6	5	13	5	11	4	14	3
CACTTGGCGCACCCTA	alt_6002_new	23	39	29	18	36	12	46	10	39	14
TGTGAAGATTCTAGCC	alt_6002_new	8	18	5	10	11	10	11	9	16	7
CAGTATGCGTCTTAGA	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TATGCCACTGGGTATC	alt_6002_new	70	122	75	65	123	62	122	53	138	66
CACGGTATCGGGAGGA	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TCCTAGTCAGTAATCA	alt_6002_new	13	22	25	19	21	18	22	15	24	10
TTATTGATCTTACAGA	alt_6002_new	26	28	5	22	17	16	26	15	34	18
TCCTTTATTTCACTTT	alt_6002_new	52	86	52	59	87	46	96	49	100	40
AGGCTAGGAGTGAGAA	alt_6002_new	27	68	32	45	66	31	48	20	73	28
CCTATATTGACCGAGT	alt_6002_new	48	63	46	35	76	28	94	31	94	49
TTTATTTGTCTCTCGT	alt_6002_new	6	17	6	7	12	4	28	5	17	14
CTGATCCTTTTCGCTG	alt_6002_new	36	43	30	25	38	25	45	22	47	24
TAAACCGGGCAACCTG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CCGAGTTATTTTTACC	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TCTAGCACCAAGCTGT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TTCTCTTCTCCTGAAT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CATATGCCAGCAGGAG	alt_6002_new	1	2	1	3	2	0	1	0	1	1
TAGTAGAGCGCCACTA	alt_6002_new	10	18	5	19	39	8	21	7	24	7
AAACTCTAGAACAGTT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
ATCTCATTACCGGATG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CTAGGTAACTGCCGAG	alt_6002_new	8	13	11	14	14	9	19	7	18	8
GGCGTTAGGACTTTAT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CTAGTACCACACGCTT	alt_6002_new	35	91	63	40	91	32	74	28	71	36
AGAAGCATAAGAGCAG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
TGCGGCTTCTCCTAAG	alt_6002_new	27	51	17	17	32	22	43	23	31	11
TGGTGGCCCCCACCTG	ref_6002_new	24	46	34	28	57	31	42	32	61	25
GCGAATACACGGACCC	alt_6002_new	13	37	22	19	39	23	42	19	34	16
TCTGGAATTCTGTTTA	alt_6002_new	19	30	17	13	38	19	31	28	35	20
ACTTCCGTCTAGAACC	alt_6002_new	0	0	0	0	0	0	0	0	0	0
GATGCTACCCTTAGAA	alt_6002_new	38	99	77	58	120	39	98	51	142	62
CGGTACGGCGCAATCG	alt_6002_new	101	158	160	120	194	95	178	121	190	95
TCGTCTAGGTATATAC	alt_6002_new	7	10	2	7	7	1	9	7	14	2
CCTCCACGGAGGTCGA	alt_6002_new	41	61	51	42	66	29	58	32	69	21
ACCTGCTAGGTATTGA	alt_6002_new	0	0	0	0	0	0	0	0	0	0
AATGGTCTGGTAAATC	alt_6002_new	44	82	49	46	90	43	91	37	89	44
TTCGACATCTTGGTGG	alt_6002_new	51	78	50	51	71	32	65	42	81	46
TATTTTGTACTTACAA	alt_6002_new	17	63	27	29	59	24	73	20	65	10
AAGTAGTATTCCTTTC	alt_6002_new	50	78	61	49	108	46	109	37	82	57
GTCGCATATGGCATTT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CAGCCTGCCTAGTTTT	alt_6002_new	0	7	0	0	6	0	7	2	6	0
TTCTCATCATTTGCAT	alt_6002_new	0	0	0	0	0	0	0	0	0	0
GGTTAGGCCTTCCTCG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
GGCTTGTGTACCACGA	alt_6002_new	0	0	0	0	0	0	0	0	0	0
CGTCCCAGGTTAAGGA	alt_6002_new	33	71	41	36	79	28	78	37	64	34
TGCCTGTCGCCGCCAG	alt_6002_new	4	4	9	7	10	3	4	6	9	3
CTCCTCCGGTACGGGA	alt_6002_new	11	8	11	13	18	5	21	14	18	11
AGAGTTTAGTCGTTCC	alt_6002_new	23	56	50	35	52	30	78	23	54	22
GTACCTTCTGGTATTG	alt_6002_new	8	24	10	11	31	4	23	11	21	6
TGTCACAAAATTGTCG	alt_6002_new	0	0	0	0	0	0	0	0	0	0
GTAATATTGGTATGTG	alt_6002_new	13	28	18	9	24	10	32	9	35	10
TGTCATGTGCTTTTAA	alt_6002_new	20	53	13	18	43	23	44	15	45	21
TTATAGTCAGAGTGAT	alt_6002_new	18	21	9	8	15	10	9	11	15	11
CCTCTCTTGGGAGCCC	ref_6002_new	17	35	18	20	21	23	43	20	30	21
TTGTCGCGCCCTCACC	alt_6002_new	37	42	41	29	45	34	67	24	45	22
CACTTACGTGCCGTGG	alt_6002_new	3	23	12	11	29	7	31	10	17	7
CCTTGAATTCTTACCG	alt_6002_new	5	44	7	5	46	8	57	6	56	11
GGATTTATATCTGGCA	alt_6002_new	74	156	101	87	154	66	181	64	171	86
GTTACGCATCTTATTG	alt_6002_new	33	62	33	24	60	34	56	24	70	22
CGTTTTAACGCCTGTA	alt_6002_new	6	30	14	8	19	8	15	5	22	13
GCAAATGCCCGATCAA	alt_6002_new	116	176	148	158	188	120	217	102	246	113
TAAATTGGGGCATGTC	alt_6002_new	0	0	0	0	0	0	0	0	0	0
ACTACTTCTATTCTGG	alt_4645_fdr	15	25	16	8	19	14	29	15	21	6
GGCCCTGACGACTCTA	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
ACACGGACGTCGCTCT	alt_4645_fdr	4	9	8	3	17	1	14	3	7	8
TAAGAAATCATTCAGA	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CAGCCCTGTAGAGGGG	alt_4645_fdr	16	47	25	18	29	16	29	14	28	17
TCCCATTAACACTTAT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTCCCACCACCGT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGCTACTAGGTTC	alt_4645_fdr	8	18	12	16	25	9	9	7	19	13
GGAGATACGTTACTCC	alt_4645_fdr	22	40	12	22	44	14	48	17	41	14
CGCTACAATTCTATCA	alt_4645_fdr	7	13	6	8	14	4	10	7	7	4
TCGAAATGGGATTCAT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTCACATTGGTGT	alt_4645_fdr	7	7	7	3	3	8	12	1	21	6
CATTGAAAGGGCTCAT	alt_4645_fdr	5	8	3	2	7	0	5	6	7	7
TCATTTGTTGATAGCC	alt_4645_fdr	21	19	14	21	27	16	24	20	43	17
CCTTCTGTCGCATGAC	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TACGGTGGACAAATTG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTCGTATTATAAC	alt_4645_fdr	18	19	21	15	16	17	21	6	20	13
AGGATCGCTTTGCCGG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CAAACACGTTACCTAG	alt_4645_fdr	1	4	9	6	12	6	20	5	10	5
TTAGTGAGCTTTATTA	alt_4645_fdr	6	20	9	6	12	5	13	11	13	13
TACGGGAACGTACTGT	alt_4645_fdr	17	42	24	20	31	21	31	28	38	19
ACCGGGGCCCGGGTTA	alt_4645_fdr	53	72	40	52	82	36	98	37	110	39
GACAATGGGTCACCAA	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGTCTTTCACCAT	alt_4645_fdr	32	52	56	40	58	38	56	32	60	24
GATCTCACCAGCGATT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGTCAGAACGTGC	alt_4645_fdr	120	162	119	90	177	96	165	76	194	90
TGTTTACACGGGACCT	alt_4645_fdr	8	7	7	4	6	3	10	8	6	4
GCAACTTCACTGTTGT	alt_4645_fdr	8	17	8	1	11	3	10	4	15	3
TGCGGTGAAATCCCGT	alt_4645_fdr	6	3	7	4	3	5	6	7	10	4
CCGTAAGCCGTTGTAC	alt_4645_fdr	15	26	26	17	25	12	36	13	31	11
TATCTTATTATACTTT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TCCATAACGCAACGGG	alt_4645_fdr	5	20	10	5	13	10	21	4	17	7
CGCTCTGCTGCCTGAT	alt_4645_fdr	15	10	6	7	10	9	12	6	8	9
TCGAATTTAGGCTTCA	alt_4645_fdr	25	54	36	38	39	28	36	29	67	32
ATGAATTTTTTGAGAT	alt_4645_fdr	109	199	144	118	165	121	164	104	209	104
GCCCTAAGAGCGCCTT	alt_4645_fdr	81	118	95	77	105	67	119	74	125	83
TCCACCGCGGGTATAT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGGATTTTTATTG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
GTATCGCTCCATAGCC	alt_4645_fdr	43	52	54	42	56	35	45	39	65	31
AGTAATATTAAAATTG	alt_4645_fdr	89	100	97	85	121	68	96	77	113	80
AGGAGCCACGTTGAAT	alt_4645_fdr	13	47	15	14	40	16	15	17	36	10
ACATAAACGTCGGCTA	alt_4645_fdr	0	0	4	0	0	1	0	0	2	0
CGGGCCTCGAATAATC	alt_4645_fdr	49	80	52	50	65	48	71	32	91	51
CGGTTTTTCATGGTAC	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TCTTAATTAAGTCGGT	alt_4645_fdr	60	64	75	72	76	75	82	69	104	42
GAAACCATTTTGGGAG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
GACTGGTTTCTCTACT	alt_4645_fdr	46	52	36	30	56	41	44	31	50	38
GGGTCAGAACGTTAAT	alt_4645_fdr	5	4	6	10	12	9	8	6	13	8
CGTACAAGTGTGAGAT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTCGAACGTGGCT	alt_4645_fdr	33	53	52	38	67	29	65	46	61	28
CCCGTATGATTCCAGA	alt_4645_fdr	2	1	8	2	3	2	7	5	2	4
ATTAACTAACATCGTG	alt_4645_fdr	7	1	5	3	7	2	5	2	6	5
ATAGGATCACGTGGTG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TGTACGAAACGCTCTT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TATAGCGGTTACTTTA	alt_4645_fdr	48	48	67	43	47	30	56	28	73	36
TTGTGGGGGTTGTCAT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCGCCTCCCTGA	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TCATATGGCTGGTCTA	alt_4645_fdr	34	61	47	42	79	30	53	25	47	34
AGACAACGTTGAATCA	alt_4645_fdr	144	136	130	132	146	110	173	121	165	88
CTCCTTCACACCTCTC	alt_4645_fdr	59	89	68	44	75	58	97	38	93	30
GCTGCGATACGGGCCC	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTATGACATTCG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CACGTGGCACCTCGAT	alt_4645_fdr	15	20	15	21	12	14	20	22	23	13
GTCGAAGGTTGGGTTG	alt_4645_fdr	44	66	49	47	83	44	73	41	66	35
CCATATCTAGTTTGGA	alt_4645_fdr	2	1	4	2	4	1	4	1	3	2
GCCACTTCTCCGTACT	alt_4645_fdr	9	14	8	16	24	16	14	12	12	13
GTAGTCATGCGCTTTC	alt_4645_fdr	67	94	81	48	88	62	94	45	92	69
ACATATTAGGCACTTG	alt_4645_fdr	1	3	0	2	10	9	8	2	10	4
TTATTAGGTCTGGTGG	alt_4645_fdr	27	54	43	27	38	37	49	33	58	23
AAATTCCGGCTTCTAG	alt_4645_fdr	132	146	120	119	151	101	176	100	179	96
TTTACCACGCGGGGGA	alt_4645_fdr	5	4	5	9	6	3	1	5	3	3
GATCACTTCTGCGGTA	alt_4645_fdr	5	13	3	7	5	6	1	2	14	2
ACTTAGAGCTCCATCG	alt_4645_fdr	25	55	32	40	51	26	48	27	50	22
GTTCCCCGAGCTCATG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCTCACGTTTCGG	alt_4645_fdr	38	45	42	32	58	41	55	33	57	31
TCCCTGTTTAGGCTCC	alt_4645_fdr	49	61	48	38	75	34	60	28	62	27
GCCGCCCTATCCCGAG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGTTTTTTGGTGG	alt_4645_fdr	33	60	30	35	80	31	58	26	67	44
ATTCCTAACTTGGGAT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
ACCACAAACCGGTATC	alt_4645_fdr	21	34	30	34	46	25	43	24	46	18
CTGCGATGCAACGGAC	alt_4645_fdr	56	79	73	78	69	57	98	48	90	68
GGTCCGCCGTTAAACC	alt_4645_fdr	5	4	2	5	7	0	2	3	8	2
ATTCAAGTGGAAATTA	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CGTAAATAACCTTACG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TGCAGTACCAGTAGAG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGATGCCCCACGT	alt_4645_fdr	22	31	19	14	51	8	43	10	46	19
CGCAGAGCATTACCCA	alt_4645_fdr	199	222	206	198	230	187	254	179	247	201
CTCGTATTGTGCAGTA	alt_4645_fdr	10	23	8	6	13	6	14	9	15	4
ACTCACACGTAACGGC	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TACTCACGAATGACGT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
GACCCGCCATAGGCCG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGCCCGGGTCGAT	alt_4645_fdr	30	45	37	35	34	41	49	29	58	24
GAGTAATTTTATCCGG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
CATTTGCTGTATTCGT	alt_4645_fdr	2	7	14	8	6	6	7	8	6	13
TCGGTTTTCATGGGTC	alt_4645_fdr	31	57	29	32	39	29	41	28	35	22
TTGTTTCAGTCCCTCT	alt_4645_fdr	11	19	10	12	19	8	16	7	22	10
TGCTCTGTCGTTGGGT	alt_4645_fdr	60	89	86	56	91	57	120	42	93	51
CTGTTCACTGGATGCA	alt_4645_fdr	8	11	0	11	5	8	11	2	6	2
TGACAGTGTTGGACGT	alt_4645_fdr	14	34	19	22	22	14	37	26	28	28
GCTTTGGAGAACTGAA	alt_4645_fdr	20	25	30	26	34	30	35	19	39	17
TTCTCGTGATGTTTTG	alt_4645_fdr	18	34	28	22	33	16	31	19	34	19
CCGCTACAGCCTGTGT	alt_4645_fdr	27	63	48	43	65	34	66	33	65	40
CGCCCAACGCGATTAA	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAACTGAATAGTG	alt_4645_fdr	32	44	39	30	74	23	49	23	50	23
CGTGCTTGGGTACCAC	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTGTATGAGGTA	alt_4645_fdr	58	71	49	46	89	51	72	43	77	45
GGATGGTCACAACAAA	alt_4645_fdr	27	36	35	25	32	30	33	26	33	27
CCCCAACGCATCCGCT	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCTGCTTTATTTA	alt_4645_fdr	0	3	0	1	1	0	0	1	1	0
ATCCATCGAGATGGTG	alt_4645_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCGTCCATTATTT	alt_4645_fdr	7	7	17	8	5	4	8	15	11	3
CCGTCAGCGAATGCTA	alt_4645_fdr	12	18	17	16	26	18	24	11	17	16
GGTTCCTTAGGGCGTT	alt_4645_fdr	97	123	122	94	154	94	152	108	148	85
GTTTGTTGCCGTAACG	alt_4645_fdr	19	15	14	13	20	17	25	12	26	8
GTGATGGTCATGTTAT	ref_4079_reverse	46	17	46	38	23	42	36	34	33	45
ACGGTCACTCGGCTTG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTTCCTATTCACC	ref_4079_reverse	88	95	105	95	89	83	78	99	74	66
GAGTCCGGTTGAGGTT	ref_4079_reverse	45	50	58	63	47	52	42	38	48	46
AACCGTCTCGGTGAAT	ref_4079_reverse	9	21	24	12	15	10	17	14	24	16
TTTACGGGTGACCTGA	ref_4079_reverse	21	16	27	12	8	22	18	20	22	13
TGAGGAGGATTGTGTT	ref_4079_reverse	5	3	6	8	8	12	7	9	8	8
CGCTCCTTAGTACGGC	ref_4079_reverse	75	65	89	73	57	68	70	71	66	87
CACCGGTATATACGGT	ref_4079_reverse	68	57	80	59	55	54	66	60	56	52
AATCTGTATATTGTAG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCCGCGAAGAGAC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGGAACTATGACCGCG	ref_4079_reverse	34	15	51	28	37	16	25	27	24	26
TTTCACCGCGGTACTG	ref_4079_reverse	0	0	1	1	0	0	0	0	0	1
ATTAAGGGGCCTGCTT	ref_4079_reverse	22	32	34	18	17	18	20	26	17	23
GTCAATGAGCTGACCT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCCGTTAAAACCG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CATCTCAATTAGTTAA	ref_4079_reverse	77	54	60	58	59	60	70	75	73	66
ATCTGAACGGTTAGTG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CCATCACTTTATCGCG	ref_4079_reverse	74	51	67	79	52	59	58	64	55	64
CTTGCAAGTATGACTC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GAGCGTACTAGAGCTC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGGCATGATCACA	ref_4079_reverse	16	13	24	28	19	10	17	12	13	12
GGGACATATTTATCTT	ref_4079_reverse	90	52	112	95	86	91	57	94	62	84
GGTCGGAGTTATAATT	ref_4079_reverse	43	42	54	73	50	36	40	48	50	38
TACCGCAAAATCTTTT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTAGAGGACTTATTAC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGATTCTTTGAGG	ref_4079_reverse	48	52	69	59	52	34	58	48	53	52
ACATAACTCAACCTGC	ref_4079_reverse	168	115	207	169	157	136	149	178	168	159
TGGTTGTGTGGTTGTA	ref_4079_reverse	15	23	27	23	25	26	25	24	20	19
GGTTTAAAGGCCTTGT	ref_4079_reverse	26	23	32	16	22	32	21	31	28	17
ACTATGCCATAGTACT	ref_4079_reverse	6	5	4	8	4	7	9	1	2	6
TCGGGTGACGCTTGAC	ref_4079_reverse	9	11	6	14	24	6	7	12	14	2
GATGATTACGTACAGG	ref_4079_reverse	11	8	21	16	9	15	10	13	11	12
CTACCGAATGGAATTC	ref_4079_reverse	44	45	73	33	34	37	27	38	36	34
CCTTGTAGACTGAGCA	ref_4079_reverse	22	19	31	25	21	32	23	17	21	28
TTCGAAATCCTTCGAC	ref_4079_reverse	30	29	39	34	28	23	33	32	31	20
CCCCGCATCAGATCAT	ref_4079_reverse	62	50	70	76	43	58	53	49	49	51
CTGGCTGCGGCTACAA	ref_4079_reverse	2	8	7	7	2	11	9	8	8	5
GAGTTAGCGATCCGAG	ref_4079_reverse	41	30	41	64	42	58	40	35	31	52
TGCTGTTACCTTGTAT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCGCCGTTTCTCT	ref_4079_reverse	9	7	8	23	12	10	7	13	8	10
TAGCGGACACAACCGT	ref_4079_reverse	56	43	69	54	48	54	32	57	57	56
GTTTGTCGCATTCAGC	ref_4079_reverse	17	30	23	25	18	35	26	27	23	26
TATGGATTTTGTGATC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
ACTAAAGTTTACCCAG	ref_4079_reverse	111	113	167	107	108	103	116	112	130	125
TAACCCTGAGTTTCGC	ref_4079_reverse	6	7	10	5	7	3	3	3	3	6
GTTATACTTCTATCGG	ref_4079_reverse	208	186	281	240	202	222	207	244	236	216
ATTCTGGGTGAGAAAT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GACTATGACCGTGGCG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TAGAACTAAACTATGG	ref_4079_reverse	144	134	162	154	102	151	123	116	114	114
CGGTATAGGCACCAGT	ref_4079_reverse	38	36	37	35	44	18	39	32	53	38
TCTGAGAGCGTGTTAT	ref_4079_reverse	68	64	101	90	54	60	72	50	68	67
ATCGTGATGCCCCAAA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCGAATTCCAGGGCAG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAACTTCCGTTGA	ref_4079_reverse	12	7	21	11	7	23	18	6	7	18
TAGTAGCGCTTCCGTT	ref_4079_reverse	8	9	8	17	15	12	11	12	4	13
TGCCGGGTATCTTCGG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTCACCGTATATA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGTAAGTTAGTTGATT	ref_4079_reverse	2	4	5	1	1	3	5	1	0	4
CACGTTGGACATTATA	ref_4079_reverse	102	101	138	116	106	116	112	97	116	128
ACCCCCCCAGAACTAC	ref_4079_reverse	16	15	27	20	13	19	21	18	10	8
TTCATGTTTATGATCG	ref_4079_reverse	24	15	37	21	12	11	10	17	19	15
CAGAACATTGGTCATG	ref_4079_reverse	22	16	24	18	15	29	27	14	25	14
TTATACACATCTAGTG	ref_4079_reverse	10	11	24	17	13	14	10	14	19	11
CAGATCGCTCGGATTT	ref_4079_reverse	31	21	49	35	24	35	28	31	28	41
TCTATCCCTGCGGCGT	ref_4079_reverse	43	29	44	42	35	28	19	35	31	37
TTTAACGCCTCTACCC	ref_4079_reverse	37	53	73	52	61	56	48	50	42	57
TGTCGTCGCGAATTGA	ref_4079_reverse	78	65	89	85	84	74	79	97	66	73
GATGTATAGAGTGGGG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGTAACCTGATGGGCG	ref_4079_reverse	67	30	54	36	27	50	36	50	39	52
AGCTCCTGAGGTTTTT	ref_4079_reverse	9	3	12	6	3	5	7	6	6	7
TGTGGATAGCATATGT	ref_4079_reverse	145	141	206	157	127	148	147	134	125	135
CTGAAGGCGGCAGATG	ref_4079_reverse	33	19	31	23	16	19	15	18	24	18
GAAGCGTCGGGAACTT	ref_4079_reverse	125	93	126	112	100	108	86	93	99	90
AGTCGTTTGAAAGCTT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AATTCCTGTAGTACAG	ref_4079_reverse	69	59	91	68	61	98	85	63	75	56
ACTTCATTGTCGGCCC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AATGGCCGACAGCTTG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CCGGCCATACGATACT	ref_4079_reverse	138	115	147	137	125	125	123	114	122	130
CGGGATTGTCATATCG	ref_4079_reverse	23	23	18	23	22	11	14	10	15	8
CACGCCTTTACCGGCT	ref_4079_reverse	20	26	34	23	27	19	20	25	23	21
CCGAGTTACAGGGTCC	ref_4079_reverse	79	63	93	84	89	87	76	67	64	65
CCTTTGCTCAGGTCAC	ref_4079_reverse	15	14	22	22	11	15	16	19	16	15
AGCGTATGATCACTTA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAAGGCGCGTTAC	ref_4079_reverse	23	35	38	20	23	35	28	34	19	25
CAGTACGTAGGCCTAC	ref_4079_reverse	4	1	0	2	0	3	0	1	0	0
GGTACGTACGATAATA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCACGCCATCTACCAA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGCATTAGGTTA	ref_4079_reverse	34	26	49	36	38	32	30	37	45	40
TTTACGTAACCGCTTT	ref_4079_reverse	93	72	103	93	75	93	87	79	83	84
TGGATCGATACGGCCG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTCCTGCTCCGCG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGACTGTACTATT	ref_4079_reverse	5	8	5	3	3	2	4	0	12	3
AAGGTACCGGCTACTT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TACAATCTCTTCAGCT	ref_4079_reverse	53	33	51	39	33	49	30	48	48	42
ATAATTCCCCCCGTGA	ref_4079_reverse	15	32	26	22	38	19	42	26	34	24
TTATGCAAAGCGTTTC	ref_4079_reverse	41	33	33	41	34	36	28	40	28	26
TATCCCCGGCTGGCTG	ref_4079_reverse	27	28	39	32	16	18	23	25	25	24
GGCTGTCGGTTCTTCG	ref_4079_reverse	69	61	90	88	70	56	63	62	60	56
GATTATCCAATCCCCA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GAATTCCGCTACAAGT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTAATGTGCATAT	ref_4079_reverse	92	86	115	83	92	115	97	90	108	89
ACTCGGATAGTAGTGG	ref_4079_reverse	26	22	17	16	18	18	26	28	18	19
CTATGACCCAGCACAC	ref_4079_reverse	58	52	82	71	45	61	72	61	60	57
TTCATCAATTTAGTCT	ref_4079_reverse	4	4	6	1	8	6	5	3	5	3
CCCTTTCCCAGTTTAC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTATGCGCAGGCCTGT	ref_4079_reverse	8	5	10	9	11	6	10	12	10	12
TTTCGCGCGGCCCGAT	ref_4079_reverse	11	5	9	9	7	12	10	6	4	10
GTCTTGAGTGCTTGAT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GGGCAAGCCAGGCTAT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CACCCTCGCGCCGTTT	ref_4079_reverse	11	6	18	9	16	10	10	9	21	15
GTGTCACTTTATTGCG	ref_4079_reverse	9	4	11	8	4	5	3	9	7	5
ATAAGTGACTCCATTT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TATAGCTGAACCCGCC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TAACGCGCTAATATAA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGATGATCAGTCCGCG	ref_4079_reverse	6	2	8	7	6	3	7	10	6	0
CAAGGGATCGGAACTT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GCAAAGACGTCAACAA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTTCTACATAGAA	ref_4079_reverse	13	14	21	16	16	10	13	14	8	11
GAACTGGGGGATCTTC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTATGGTACGCCC	ref_4079_reverse	11	18	21	23	18	16	10	13	12	15
TGGTAGATGGACGGCT	ref_4079_reverse	6	8	7	15	7	15	16	6	8	8
TTTAGACGGTCTAGAA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCACAAAGAAGAACTT	ref_4079_reverse	40	37	54	53	43	45	34	53	44	42
AATTTGACGCTATGCC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGGGATATGCGTA	ref_4079_reverse	41	54	80	56	46	59	42	50	43	40
TGGTTAGTCGTTTATG	ref_4079_reverse	35	43	65	39	42	43	50	36	36	44
GAGTCATATCGTGAGA	ref_4079_reverse	34	24	50	32	26	42	28	26	27	31
CGAACGGGCGTTTTTT	ref_4079_reverse	22	15	33	40	28	27	25	26	19	25
GATCGGAACTTGTTTT	ref_4079_reverse	69	50	72	67	40	63	42	48	67	47
TCGGAAATCATCGAAC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTACATTCGTTAT	ref_4079_reverse	8	6	3	8	7	7	6	7	11	8
GTAGAGTACCGACCTG	ref_4079_reverse	39	63	65	66	58	55	61	50	71	47
GCCAAATCTTTTCGCT	ref_4079_reverse	33	42	58	57	56	39	66	50	45	69
TAGGTTATTGCCTCGA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATCATGTACGGACCGG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTTTGGGTAGGTC	ref_4079_reverse	17	12	15	12	9	11	10	7	13	5
ATCGTCTAACTCTATG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CAATACACGTCCTTAG	ref_4079_reverse	7	10	5	4	13	1	12	2	11	8
TTAATATTTTGGGTTT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CATATTTCACAACTAC	ref_4079_reverse	57	44	61	49	66	52	52	51	61	44
TTGTCACAACCGGGTC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGGCTCACGGCTA	ref_4079_reverse	16	23	19	19	22	13	11	22	12	26
AGAGCTGTGAGGTGAA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGGCGCAACCCTT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CAGAAAGCTTAACATA	ref_4079_reverse	22	21	23	18	21	16	17	22	27	13
TAGTTAGGCCGTACCC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGTGTATCTAGAA	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCTTCGCAGGCAC	ref_4079_reverse	76	43	101	90	60	64	66	65	72	69
CAAGTGGGGCCTGACG	ref_4079_reverse	87	79	111	103	71	101	96	78	76	83
GATGATCGCAGGGCCC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCAAGGACGAGAT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCCTTTTGTCAGC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AATTCCGTCGGTAGAC	ref_4079_reverse	2	2	2	1	3	0	2	2	5	1
TCGACAAGGTCCGGTC	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TCTATTTACCTTAACT	ref_4079_reverse	63	53	55	67	54	51	53	57	52	57
TCAGTGTGCGATCGCG	ref_4079_reverse	19	23	12	24	21	22	18	13	14	15
AATAGACAAGATCAAG	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGTCCCGGTTAAT	ref_4079_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCTCGCAAGATCC	ref_3416_upstream	45	16	30	35	17	21	12	35	19	20
CGTTTACCTTCTAAAA	ref_3416_upstream	21	12	21	19	17	20	12	28	24	13
GCACGGTACACTCGCA	ref_3416_upstream	35	60	42	31	48	39	48	28	62	28
ATTACAAACTCAGCGA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
AATTTGGTCGCAGGTG	ref_3416_upstream	5	3	6	16	5	7	5	2	5	4
TAGTCTTAGCCGTTTA	ref_3416_upstream	20	18	14	19	11	21	12	12	15	24
TCAGCCGATGCTACGA	ref_3416_upstream	3	0	2	1	1	1	1	1	2	4
ATTTCACGGTTCACCA	ref_3416_upstream	52	29	50	36	23	40	28	37	18	38
GGTCCTCGGGCGGTAA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCGCAGCGCTCCA	ref_3416_upstream	44	34	36	42	30	21	20	26	25	47
TCTCCTTAGTTTCCAC	ref_3416_upstream	112	80	140	111	90	118	88	74	81	105
AAGGGGACATTCGTAG	ref_3416_upstream	450	273	479	436	315	367	264	376	306	339
ACTTCTAATTACTAGA	ref_3416_upstream	12	6	7	11	2	18	6	7	6	6
CTGATTTTCTTTACAC	ref_3416_upstream	0	0	3	1	0	0	0	1	0	1
CGACAGTGAGCATTCT	ref_3416_upstream	23	10	25	38	11	15	17	15	12	11
CACTGCCGCCATATTC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
ATATCTTCTCAGAAAC	ref_3416_upstream	74	37	89	70	52	77	52	73	53	75
AGTCAAACTTAGCTGA	ref_3416_upstream	9	5	6	7	1	7	1	5	7	6
GGCTTCTGGGTAGTGT	ref_3416_upstream	87	59	134	97	81	98	74	103	61	95
CCTGAGTGCGTTCGGA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TGCCACGCTTTAATCT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TGATGTTTCGCTGTCC	alt_3416_upstream	27	25	40	36	23	23	29	26	33	28
GGTATCGATGTCCAGC	ref_3416_upstream	46	22	52	34	23	38	29	41	23	25
TTTCACTGACTTGTTA	alt_3416_upstream	23	20	26	29	23	22	16	19	19	25
TAGCCGTCCGCAAGTG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCGGGGCCCGGGA	ref_3416_upstream	15	9	22	22	11	13	6	15	12	14
TACACCCTTCTATTTC	ref_3416_upstream	31	24	54	46	45	51	24	56	35	41
GCCAGTTCTTCGTTTG	ref_3416_upstream	26	21	30	16	14	13	17	21	17	22
GTTGTAACGCGCAGCA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTGACAGATTGCT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTGCTGGCGTTCT	ref_3416_upstream	116	86	141	135	75	127	90	130	97	113
CCGTTTGTATTTTCTA	ref_3416_upstream	49	29	65	53	34	36	29	43	27	46
CGGGTCGTAATGGCAA	ref_3416_upstream	1	1	4	3	1	1	1	4	2	0
GTCTGTTTTCCTTTTT	ref_3416_upstream	11	7	20	19	9	16	9	17	11	19
TCTGACGACAGAGAAA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CACGCGATCCGGCAAA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGCAGATAGCCAA	ref_3416_upstream	33	25	34	27	21	25	17	29	26	34
GTATTTCAATGTATAA	ref_3416_upstream	28	16	25	26	16	17	13	27	18	22
ACCGTGAGCCAGGTGA	ref_3416_upstream	83	86	127	99	82	112	91	105	79	95
TTCGGCTGCTCGCTGG	ref_3416_upstream	35	27	41	44	36	40	33	33	35	38
CAATACGATTTTACTG	ref_3416_upstream	5	8	14	14	5	6	9	5	8	9
GTCGTATGTATCGTTA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGTATAAAACGCCCAC	ref_3416_upstream	23	24	36	25	23	23	23	22	18	26
GCAGAATATGTTTGGG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGGTGACGGACATGGT	ref_3416_upstream	11	5	10	6	7	6	7	12	8	9
TCAGATTCGGAAGGAT	ref_3416_upstream	13	3	8	13	6	11	4	8	3	8
CTGCTTGCGTGCCTGG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCTTTTCACTTAT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CAGTAAAGTGCACATG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TAATTGAGAGCCAGCG	ref_3416_upstream	37	21	51	36	31	38	39	45	23	34
TTCGCAAGCTTTGCCT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGCGGTATGTCCC	ref_3416_upstream	8	2	10	7	5	7	3	7	9	6
ACCTCCTAAGATCCTG	ref_3416_upstream	60	39	64	68	29	57	32	74	51	74
TTTCCAGGACTGTCAT	ref_3416_upstream	267	230	317	341	260	292	217	271	254	250
ATGGAGTGGAATGTTA	ref_3416_upstream	103	80	127	107	71	118	84	91	84	90
CCCACTGGTACCTGTT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
ACTGAGCCACGGGTCA	ref_3416_upstream	18	14	10	8	9	13	15	13	12	17
CCGTCAAACTAACTAA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
ATGAAAAGACAGCGCC	ref_3416_upstream	4	3	4	2	2	1	1	3	2	1
TTCCTTGTGTGTGTGT	ref_3416_upstream	31	30	68	36	24	32	28	32	27	22
GTTCAGCGAGTTTTAC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CGATGGAGACTCTGTA	alt_3416_upstream	87	82	99	94	90	90	94	79	114	83
CCTTAAGAAACTCTCA	ref_3416_upstream	79	36	95	72	57	51	53	70	52	64
CAGTTACAATTGTTTT	ref_3416_upstream	37	30	31	28	28	22	26	19	19	28
TGGCTTTGCTTTATGC	ref_3416_upstream	30	27	32	26	21	18	18	27	23	19
CTTTTAGTAACCGTAG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGATCTATGAAACAGT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TACTCTTCGGTCTTCC	ref_3416_upstream	190	102	191	206	105	159	100	152	109	160
GGCTCGATTTCGTCTT	ref_3416_upstream	12	20	25	28	22	13	15	15	32	22
CCTAAAGCAAATCGGT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GTCTATAACTCGGCGG	ref_3416_upstream	75	63	56	87	39	57	43	71	58	54
CTTAATATTCATGTTG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TGACGTCTCCCCTCCC	alt_3416_upstream	14	3	15	10	2	11	11	16	11	13
GCTGTTTTGGTTTTCA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CCACTTAATTATCACA	ref_3416_upstream	15	16	29	27	21	28	17	17	8	16
TTCCCGATCCGTTCGT	ref_3416_upstream	36	28	43	38	26	37	24	57	21	36
GTACGCGCTTTTCACT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
AACCTGTAGTAATCGC	ref_3416_upstream	357	246	437	353	279	365	257	328	268	314
AGCGTGTCCCTGTGGT	ref_3416_upstream	15	27	27	30	20	21	24	21	25	15
TAAAGCAAGGGCGCCC	ref_3416_upstream	10	9	19	18	13	16	9	15	10	16
CAGTCCTATCGTAATT	ref_3416_upstream	19	5	28	21	7	24	11	23	14	18
TCGATCATATCTCCCA	ref_3416_upstream	33	19	40	26	20	29	27	30	20	23
CTCTTCAAGGCTTCCC	ref_3416_upstream	32	14	46	36	29	31	23	33	33	20
ATGTCTAAATATCATC	ref_3416_upstream	11	14	18	19	14	20	9	21	15	12
GCCCCACCTTGCACCA	ref_3416_upstream	20	19	16	27	22	18	19	15	15	8
CCTTGTGTCTACTAGC	ref_3416_upstream	71	60	68	72	57	51	57	50	51	58
TAGTCGTTCAGTCTGC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCTCACGGTTCCCGTG	alt_3416_upstream	85	44	96	80	41	81	60	66	61	73
TATGGCCTCTAAGGGC	ref_3416_upstream	78	60	104	88	45	86	64	76	61	67
GGCCTGAAGGACTTGC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TATCGGGTCACTAGGG	ref_3416_upstream	8	7	10	12	5	8	5	6	4	6
CACAGTAAAAATCCTT	ref_3416_upstream	2	3	5	0	1	3	2	4	1	3
TGGAAATCCATAATTG	ref_3416_upstream	7	4	5	5	6	6	3	3	6	9
ACCCAGTAAAACAAGT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CGACCTAACTTTTTGT	alt_3416_upstream	80	21	69	71	45	50	29	54	29	63
CGTCTGTGACATTAAG	ref_3416_upstream	2	1	4	3	1	2	2	3	0	6
TCTTTTATACTTGTTA	ref_3416_upstream	29	28	47	42	28	23	27	36	24	40
ATAGCTTCCCGGGTAA	ref_3416_upstream	20	13	18	33	16	25	23	19	16	15
AAAGGGAATACGTTAA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TAACCCAATCCACGAC	ref_3416_upstream	33	32	40	29	15	34	22	27	17	29
TTTAGGGCCCGAGCGT	ref_3416_upstream	55	48	68	56	22	47	33	50	40	60
TTTTCTTCCTTACGTC	ref_3416_upstream	4	3	8	7	5	7	9	10	8	4
TCTTCGTCTGGTTTAA	ref_3416_upstream	32	26	46	36	32	20	28	56	18	38
CACCTATGGCTCAACT	ref_3416_upstream	31	25	22	23	22	22	23	36	25	18
AAAAATAACAATTCCG	ref_3416_upstream	36	30	38	52	25	40	20	48	40	45
TTTTGTTTCCATTAAT	ref_3416_upstream	134	72	144	125	79	115	63	115	70	127
ATAGTCGGCGGTCGGT	ref_3416_upstream	10	5	9	12	9	15	4	19	7	11
CAAAGCGCTACTGGGC	ref_3416_upstream	140	76	148	127	82	132	105	112	94	99
TGTCTTGGGAGTACTG	ref_3416_upstream	72	65	98	87	74	73	62	73	62	72
CATTCTGGGTTCCAAA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGACGCGCTAGGGCAG	ref_3416_upstream	10	6	11	6	5	7	1	7	4	3
ATCGCTTCCCTATAAG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
AAGCATGGCGGATGAT	ref_3416_upstream	17	5	17	16	10	20	10	5	9	11
ACACTCGCGTATCCCA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GCAATGAGGACAATTT	ref_3416_upstream	5	1	8	6	2	11	4	12	5	4
ATACGATTCGCCGTAC	ref_3416_upstream	54	37	49	38	27	43	40	54	27	39
GTTTATAAGATATAAA	ref_3416_upstream	56	35	66	73	45	65	37	52	51	63
CCGCCGTTTAAGCCCA	ref_3416_upstream	98	63	142	123	72	100	63	103	75	115
TTCTTTATAATCCCTA	alt_3416_upstream	117	71	147	113	72	87	92	87	90	93
AGCTATTTTCGACCTA	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
AGGCACACATCGCTTC	ref_3416_upstream	21	15	33	32	19	24	24	25	11	11
ACTTCTTATATCCTGC	ref_3416_upstream	18	13	23	17	11	15	14	23	15	8
GCTATTGCGCTCTCCT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CTTCAATAACCAGCTC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
ATGCACCACCAGGGTT	ref_3416_upstream	153	105	178	144	123	137	102	155	116	129
CGAGGTGATTTCTGTG	ref_3416_upstream	4	5	4	10	5	10	15	7	4	9
ACCCTTTACAGTTTCT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAACAGGCGTATC	ref_3416_upstream	25	17	29	20	14	22	18	29	10	29
ATTATTATCTCACAGG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCTGAGTTCTCCATGT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CATTGGCTCTTCGGTT	ref_3416_upstream	19	15	18	27	7	19	12	23	11	18
TCTCCTACACCCGGGC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GCGTAGCACCATGGAA	ref_3416_upstream	2	3	3	3	5	10	3	11	4	3
GCTGCCTTCTGGGTTT	ref_3416_upstream	54	36	65	55	48	42	38	55	59	42
AATTTGAGTTCACGTC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
AAAACATAATATTTCG	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTGTCTGCAGTCA	ref_3416_upstream	27	18	31	14	15	23	19	20	20	16
CTTGCTCCAAACGTGT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTGTGCGGCTCTC	ref_3416_upstream	9	12	21	13	11	9	18	13	7	18
TCATTTATTGGGGCAC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCCTCGGGTGATT	ref_3416_upstream	4	4	8	6	6	16	7	9	9	9
TTAGGTTGGCATATGT	ref_3416_upstream	50	32	48	53	18	32	35	29	31	25
CCGCACCCTGTTTCTG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TTGACTGACTCAGATT	ref_3416_upstream	30	15	36	20	21	34	27	29	27	18
ATTAAATCTGAGATGG	ref_3416_upstream	43	37	44	50	49	51	42	25	48	46
TGCTATTTTCGACCTA	ref_3416_upstream	158	139	180	133	131	133	130	157	142	160
TTCGTTAATCACTAAT	alt_3416_upstream	41	24	60	40	28	39	21	36	25	31
GGAGGTTCCCCACTGT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCAGCGGTCGAGT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTTGCCATGCATG	ref_3416_upstream	8	6	9	11	4	9	5	9	4	5
CGTGAGCCGGCCGTCT	ref_3416_upstream	10	2	18	16	6	8	5	19	12	14
AAGAGCAACCCCGTTC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCAATTCGTTTACGGC	ref_3416_upstream	34	20	31	30	12	23	19	25	19	18
CTCTGCATAGTTGAAT	ref_3416_upstream	54	39	60	53	32	48	44	47	27	49
GCTGTCTTGGCGTCGG	ref_3416_upstream	60	47	80	67	60	50	51	50	32	56
TATGCGCCTGGTTACC	ref_3416_upstream	9	5	9	7	4	7	5	13	5	11
TGGCCTTCCGGTTGTA	ref_3416_upstream	11	7	10	13	4	3	6	8	4	13
TCGACAAGAGTAGGAT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTGCGCAGGCGAT	alt_3416_upstream	92	82	137	86	83	90	90	80	64	95
GAAGACACCTTTCTAT	ref_3416_upstream	14	11	14	5	10	5	6	8	8	12
TTTCTTACCCGTATAC	ref_3416_upstream	8	19	28	13	16	17	24	21	23	32
ATTATATCTATCGTAC	ref_3416_upstream	223	167	224	217	183	187	195	222	202	228
TCCTTCTTTTATGAGA	ref_3416_upstream	90	47	71	71	52	59	62	68	63	65
CCAATTTGGACGGTAA	ref_3416_upstream	79	42	94	86	36	65	69	66	63	72
TCTTCCTTTCACCGAC	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGTTGGTAATGCT	ref_3416_upstream	0	0	0	0	0	0	0	0	0	0
GTATTACCCCCCTCTG	ref_5845_new	24	66	36	33	78	24	77	25	85	33
ATCCGTCGGCTTAGCA	ref_5845_new	18	30	21	11	21	19	35	10	27	13
AACGCTGACCGCAATT	ref_5845_new	7	11	7	10	19	7	18	8	17	6
TATATTACTCATTGCC	ref_5845_new	34	47	31	32	51	16	52	23	57	21
AATAACTCTGCCATTA	ref_5845_new	0	0	0	0	0	0	0	0	0	0
TTGACATGAGTGCTAG	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CGGCCTCTTCTCCTCT	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CTTAGATGGCCTTGAT	ref_5845_new	16	19	23	18	25	18	22	11	14	12
ATTTACCTTTCGGTCA	ref_5845_new	1	4	3	2	4	0	5	0	6	3
AATTTGCTTGGATACG	ref_5845_new	12	22	17	13	16	13	21	17	19	11
TCGAGTGGGAAGTCAC	ref_5845_new	172	247	187	166	233	129	269	119	290	169
TACTATCCGCATATCG	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CAGCCTATCAAATATA	ref_5845_new	9	15	17	6	17	8	21	10	19	7
TAGAGGTAACTTGATG	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CCTGGATTCACTGTTG	ref_5845_new	14	38	19	13	47	11	42	19	40	19
GCCAACCATTTGTTAG	ref_5845_new	0	0	0	0	0	0	0	0	0	0
GGCGACCGGAAAACCG	ref_5845_new	116	165	112	86	145	99	182	94	164	94
AGCTGCAGCTGGCCTG	ref_5845_new	23	39	25	28	36	35	42	33	43	32
AATCCCATAAGGCTTG	ref_5845_new	24	30	30	21	39	25	37	24	42	33
TCCTTGGGCGTCTAGA	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CCTTATCTGGCGGTGT	ref_5845_new	31	27	28	22	30	35	44	19	46	27
CGTTATCAACGGGGAC	ref_5845_new	43	72	52	41	86	61	100	49	86	41
TCAACTGGCGGGGGCT	ref_5845_new	25	48	18	20	34	32	46	28	41	22
TGACACGCATTGGATA	ref_5845_new	4	2	3	1	5	6	7	4	2	1
ACCGGGGACAACTTGG	ref_5845_new	33	38	26	23	42	29	40	20	38	13
AAGGCGCTCGAGTTAG	ref_5845_new	42	51	41	32	49	40	58	28	53	44
TAAATATTGACTGGTC	ref_5845_new	23	43	30	21	37	19	45	16	46	29
GCTCACGGTGAAGCGG	ref_5845_new	0	0	0	0	0	0	0	0	0	0
GCATGGTCTGGGTACG	ref_5845_new	25	31	21	13	40	23	24	16	35	20
CTTTACCGGGAGTTTC	ref_5845_new	20	37	36	24	36	32	40	21	41	23
TGCCATAAATGAGGGT	ref_5845_new	33	42	42	29	50	31	48	30	57	27
TGGGGACTTGGGTTAC	ref_5845_new	8	13	10	7	7	8	18	5	20	6
TGTTACTAATATGCCC	ref_5845_new	16	38	29	31	26	12	24	24	34	18
CGCGTTCCAGATGTGC	ref_5845_new	51	79	68	68	107	44	89	58	104	46
CAAGACAGCTATAGGA	ref_5845_new	3	12	4	8	9	5	16	7	11	5
TACGAACATATTGCTG	ref_5845_new	0	0	1	0	0	0	0	0	0	0
TCTTCGTTCAGACTTG	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CATAGGGCTAATGCGC	ref_5845_new	126	172	140	95	229	116	184	108	231	127
GCGGCAATCGATTAAA	ref_5845_new	25	46	26	21	43	29	38	20	38	26
CTGCCTACATAGTTTC	ref_5845_new	47	57	45	24	53	30	54	41	55	35
ACTGCATTGGGGGACA	ref_5845_new	1	15	7	3	16	6	8	6	9	2
CTGTTGACGACTATCG	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CAGGTTGCGCCCCGTT	ref_5845_new	47	48	27	34	64	27	44	26	60	27
TGAAGGTAGCTGGACA	ref_5845_new	0	0	0	0	0	0	0	0	0	0
CGTGTGTCTAGGCTGG	alt_5845_new	138	446	175	152	465	148	514	138	490	141
GCTTTGGCTTCAAATC	ref_5845_new	0	0	0	0	0	0	0	0	0	0
GTTAGTCAGTCCATTT	ref_5845_new	20	29	28	12	31	25	31	16	33	25
GTTATCTGGGAAGGCG	ref_5845_new	2	4	1	1	1	1	2	1	1	2
GTTATTCTTGCTAGCT	ref_5845_new	126	174	167	117	217	107	201	136	235	110
CATTATTTTGTGCCCG	ref_2783_fdr	127	196	156	123	217	125	201	96	237	108
TATGCTTGTTTTTCTT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
AGAACGGTGGATTTAA	ref_2783_fdr	27	47	20	31	58	27	50	18	50	16
GTGTTCGACGTGGTAG	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGTGTTTAAGTTC	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCGAGATTAGCCC	ref_2783_fdr	36	54	55	40	55	42	74	34	54	24
GCGGCTTCTCTTTTGT	ref_2783_fdr	2	10	7	4	8	7	7	4	8	5
GCATTCCTTTTACATT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
ATAATTCCTGTGTGAA	ref_2783_fdr	5	11	6	4	14	2	10	1	4	3
ACTTTATCTAGATGCG	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCGCTCAGCGCCC	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGACAGCCAGAGG	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TCATTAACATTTATAT	ref_2783_fdr	26	33	35	12	43	18	31	19	31	13
CGCTTTTGGGTATTAT	ref_2783_fdr	6	13	14	15	19	11	23	11	25	11
ATCACTATGTACGCTG	ref_2783_fdr	9	9	11	10	24	13	7	7	17	6
TGCACTATACATCCGC	ref_2783_fdr	12	15	15	18	23	11	21	12	32	10
TACCGGTTGGATGCCA	ref_2783_fdr	82	109	73	58	155	65	132	65	131	64
TCTCGCACTGAAGACC	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGGTCTGAACCCT	ref_2783_fdr	32	59	49	37	80	33	63	42	53	28
CCGTGTACTTAATGTT	ref_2783_fdr	66	89	76	75	127	59	85	55	110	48
GCGCCAAATACGGGGG	ref_2783_fdr	14	13	22	17	28	9	27	10	15	8
GCCCCTTCCGGGGTAT	ref_2783_fdr	29	52	29	25	41	32	54	25	63	26
TGTCGCATCCGAGATT	ref_2783_fdr	57	88	75	54	84	55	110	48	94	45
CTCTATCAAAATCCCT	ref_2783_fdr	28	59	37	41	57	33	45	28	42	27
TGGGTAATGATCCCGT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGTGGCAGGGAAC	ref_2783_fdr	21	32	19	23	35	24	33	28	31	26
TCGGCGACTTCGTAGT	ref_2783_fdr	9	18	14	20	23	15	33	7	25	12
ATCAGCTTGCCGTGCT	ref_2783_fdr	15	37	21	22	18	17	31	25	43	12
CTGCTTGATCATCATC	ref_2783_fdr	17	23	18	11	43	16	45	19	24	16
GGTGGTAAGTGATTGC	ref_2783_fdr	66	132	69	72	139	55	138	67	156	66
TCTTTGCCCATTCGAT	ref_2783_fdr	52	85	52	43	102	62	109	39	109	47
TGGTTAGTTACTTGTG	ref_2783_fdr	32	78	55	31	103	33	94	33	77	40
GTACTGCTTTTTAGGG	ref_2783_fdr	0	1	0	0	0	0	2	1	0	0
GGGCTCTTGGTATTAC	ref_2783_fdr	2	6	7	3	6	1	7	4	2	1
AGGACGGATGGATACT	ref_2783_fdr	106	181	164	116	215	127	220	121	232	106
TTGTATACACCCTTGG	ref_2783_fdr	13	14	8	13	23	14	19	11	26	16
TTCTCGAGTTGGTTAT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
GTACGAGGTCCCGGGA	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
GGTTGCTACTATGTGT	ref_2783_fdr	25	35	15	25	36	22	40	8	40	15
TTATTCTTGATATTGA	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
AATCGACGTTTAGGTT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TATTCCAGGGGCCTGC	ref_2783_fdr	109	189	154	125	173	115	185	116	166	88
GCAGTGCCAGTTTTTG	ref_2783_fdr	0	0	1	0	2	0	1	1	3	0
GGAGCTAGATATTATC	ref_2783_fdr	63	118	102	92	99	78	130	71	135	84
TCCGGTCACAATGGAT	ref_2783_fdr	8	17	16	9	12	13	26	11	26	13
TCTATCGGCACCCAAG	ref_2783_fdr	45	61	48	44	49	33	51	33	65	50
CATGTGTCAACAATTT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TAATTTGGTCCATGGG	ref_2783_fdr	9	33	25	28	22	21	34	11	48	20
CCCATGAAGGGCGACC	ref_2783_fdr	159	191	160	162	203	147	230	131	212	125
ACTCCGCATTGACTTA	ref_2783_fdr	78	204	136	86	161	105	189	90	196	87
GGGTCCGCGTCCTGTA	ref_2783_fdr	12	10	10	8	6	10	8	6	21	7
AGCCCGTGTAAGCGAA	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TTGGATTTTGTCACTG	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TATTTTCATTTGCTAT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
GAACCTGGCACTTTTG	ref_2783_fdr	40	59	50	43	74	41	83	29	66	22
ATAAGAGCCTTGACGT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
CCAACCTCCTATTTTT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TTATTATCTCAAGGTG	ref_2783_fdr	26	45	24	29	62	21	47	23	56	14
AGACCGAGTAAGCGAA	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGAAGCTGCCCAG	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTACGGACAGTTG	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCATCTGCTGTTT	ref_2783_fdr	9	18	13	10	20	9	14	5	16	3
TCCGTACTGGTATGTG	ref_2783_fdr	24	42	18	19	30	13	34	20	38	16
ACTTCTGTAGTGCTCG	ref_2783_fdr	25	43	34	27	49	30	42	17	57	19
ACAAGGTTTACATTCG	ref_2783_fdr	14	16	20	7	17	16	13	10	17	6
CGGGACCATACGACGT	ref_2783_fdr	44	55	38	43	49	37	72	30	74	29
CCCATGAAGGGCGCCC	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGGACGGCACACT	ref_2783_fdr	156	271	230	160	250	162	313	153	249	157
CGGGTCTGCCTGGGTA	ref_2783_fdr	2	10	11	4	8	0	4	2	6	2
TCGATTACTCCACGAC	ref_2783_fdr	9	4	9	5	16	13	13	8	8	4
ACCTCGTCACGCCCAT	ref_2783_fdr	17	25	15	19	26	21	37	17	39	7
AGTTGGGATTCGGGTT	ref_2783_fdr	49	63	50	41	73	37	65	38	66	48
GCCCGAAGTCTCGTAT	ref_2783_fdr	50	89	57	38	98	36	87	46	100	27
CCATGCTCATTAGCTA	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
GCGAGAAGTCGGAGAA	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
CACCGCCCCTTTGTGC	ref_2783_fdr	46	80	43	38	73	33	97	45	84	32
TACTACTGTGGTTGTC	ref_2783_fdr	20	37	23	10	44	21	32	29	42	16
GTCGGTTCTCAATTAC	ref_2783_fdr	20	23	19	7	19	18	26	13	26	14
CCCATCTTCCACTGGG	ref_2783_fdr	5	14	6	5	7	4	12	7	12	5
TGATACCCTTTCTATT	ref_2783_fdr	14	40	24	10	35	19	37	13	45	17
CTAAACCACTTAGTAT	ref_2783_fdr	3	4	5	5	6	5	14	2	5	6
TGGTTCTCTCCCAACC	ref_2783_fdr	4	14	11	6	6	1	12	6	12	3
GTCGCCATATCAAACC	ref_2783_fdr	14	42	18	19	50	18	42	25	69	26
CACTTTTGCATAGTTC	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
ATATCTAAGTCTCCTT	ref_2783_fdr	26	29	35	20	43	23	38	24	49	28
CCCTACGAGATTCTCA	ref_2783_fdr	88	161	109	76	124	99	170	88	149	65
GGCTGTAGTCGATTTT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAACGAGGACTCT	ref_2783_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTAAAGCGTTTTT	ref_2783_fdr	75	103	72	69	94	78	103	52	122	47
CGTCGGTTTTCCTCCG	ref_2783_fdr	14	30	22	23	28	17	38	20	30	18
CTATTGAATTCTGGAC	ref_2783_fdr	10	20	11	12	24	11	21	7	32	12
ATAAATCGGCTAATTG	ref_2783_fdr	1	0	0	0	1	3	0	4	2	0
TCATTTCCCTGCCTCA	ref_2783_fdr	32	70	39	47	63	30	73	24	77	29
GGAATACGCGCTGTGT	alt_4372_upstream	11	20	15	14	33	10	24	6	36	18
ACAGGCCTCTGGGGTC	alt_4372_upstream	2	34	11	7	31	3	29	11	34	11
GCTAACCCTGTAGTAT	alt_4372_upstream	20	48	15	20	41	17	27	20	24	11
TGGCTTTCACCGTCCG	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGAGGGAGCACGT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
AGTTACGGACTTTTTT	alt_4372_upstream	1	0	1	0	0	0	1	1	1	0
CCAGTTGGTATTCCCT	alt_4372_upstream	15	55	16	21	69	17	61	26	54	9
TGGCTACATTGTCCGG	alt_4372_upstream	6	12	4	4	3	2	15	4	10	1
CCAGTACGGACCGCTT	alt_4372_upstream	9	14	10	4	11	3	13	5	16	4
ATTTTTAGTTTTCAAC	alt_4372_upstream	12	25	10	12	39	13	33	6	47	10
TTCTCTTGTTACCTCG	alt_4372_upstream	7	12	5	6	14	3	8	3	16	6
GCCGTCTCTAGTAGTC	alt_4372_upstream	17	22	10	7	30	8	36	8	18	10
GTGACAGTATCGAATA	alt_4372_upstream	7	8	3	5	6	8	14	6	10	9
TTTTTTTTCCCTTTAT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGATCCCATTTCG	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GCACATAAATCGGCCG	alt_4372_upstream	21	54	25	23	39	24	44	17	50	18
CCTGAAGCGGCTCTCG	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
ACTTATTCCTCTCATT	alt_4372_upstream	25	65	29	29	61	21	70	30	72	21
ATTCTGAGGTTATGTC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GCTCACGCACTGTAGC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GACAGCGATGTGATTC	ref_4372_upstream	16	40	11	18	28	13	35	9	32	22
TACATTTCGTGCTGAG	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
CATGCTCAGTCTGTCA	alt_4372_upstream	1	9	4	6	5	1	5	3	15	1
TAATGCTTCCTGGGGA	alt_4372_upstream	28	57	32	25	58	26	70	29	63	20
ACAATACTCGCGTGCG	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
TGATCGACCTTCAGCG	alt_4372_upstream	2	9	9	7	8	4	13	6	2	6
GCCTTTAGTTCTTGTA	alt_4372_upstream	37	93	38	20	76	25	87	24	77	20
ATAGAGTATCTTGTTT	alt_4372_upstream	8	20	10	7	20	9	21	7	13	12
TCTTTTCTGTAGCGAT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GATTCGTGCGTTTTCT	ref_4372_upstream	19	37	38	25	27	19	47	14	33	18
TGGTGGGCTAAGGACT	alt_4372_upstream	3	11	3	4	5	7	6	2	5	4
AGGGATTTCATGTTTG	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTTTTTCCCTTT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTATATTTTTAGT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGTCATAGTTTGG	alt_4372_upstream	22	47	20	22	45	20	28	23	62	13
GGGAAATTTAAATTTA	alt_4372_upstream	71	120	57	63	122	44	102	46	106	58
ATGTGTTTTTGTGATT	alt_4372_upstream	6	5	4	4	7	8	8	4	13	1
TAGGGAAATCAGTTCC	alt_4372_upstream	9	16	13	7	24	3	15	4	16	9
GATTGGCTCTTGTAGT	alt_4372_upstream	25	57	17	23	74	21	67	20	66	24
TTTTTTTTTCCCTTTA	alt_4372_upstream	77	141	113	73	190	91	188	83	162	76
TTTTATTCTCCTAATA	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTGACAATCTATA	alt_4372_upstream	44	90	42	38	80	38	72	24	87	33
CCTATTAGTTAGCTCC	alt_4372_upstream	14	61	29	21	52	23	68	18	69	18
CTACTTTAAATCAGTC	alt_4372_upstream	13	40	25	16	43	23	56	23	41	14
ATGCTATAACTGATTT	alt_4372_upstream	21	54	24	21	35	19	39	12	47	16
GAATTGGAGTTATATT	alt_4372_upstream	26	49	27	31	51	23	51	20	43	16
CGCTGTTCGGGGTCAT	alt_4372_upstream	2	7	3	0	3	3	5	3	5	1
AGGTTTTTCCGCTTGG	ref_4372_upstream	53	98	53	56	94	61	95	41	107	40
GTTGGAGAAGATGTGC	alt_4372_upstream	7	8	10	7	12	3	11	4	8	2
CCCTATTCGAAATAGG	alt_4372_upstream	0	4	2	0	3	1	9	2	3	1
GGCGGGGTCGATGTTT	alt_4372_upstream	12	19	12	6	17	1	13	1	15	9
GACCATATTATTTTCT	alt_4372_upstream	20	23	16	15	27	19	31	9	24	9
TTGTGGTGTGCCCTGT	alt_4372_upstream	7	13	7	9	7	8	14	3	15	3
TGACGCCTAACTGGTG	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTGCGCTGGAGTG	alt_4372_upstream	4	14	5	5	7	3	11	5	9	1
CCAACGAAGGCCACAC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GCGAACAACGCGCTGC	alt_4372_upstream	2	11	5	6	11	7	7	2	6	4
AGTTTACTATGGATTG	alt_4372_upstream	14	24	12	13	39	14	27	11	39	19
TAGACTGTTTAAGCAT	alt_4372_upstream	21	39	18	10	30	10	45	15	43	16
TTCCTCGCCATGTATC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GGTCATTGGAGTTAAT	alt_4372_upstream	6	15	5	1	11	4	14	6	21	5
ACTGTATATAGTTGAG	alt_4372_upstream	10	14	3	7	6	1	17	5	17	5
CAGTCGTTACCCTTAT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTTGAACCGTCTT	alt_4372_upstream	55	109	59	45	94	37	84	45	97	47
GTCATTATTCGGCCAG	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
TGTAACTCCGAACGCA	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
CTATGATTTTATTCGT	alt_4372_upstream	46	83	42	32	68	39	77	30	79	31
TTCAAGCCTAAGGATA	alt_4372_upstream	1	15	4	7	10	3	11	6	19	0
CTAGTAGTAGGGGTTC	alt_4372_upstream	44	91	74	40	128	40	76	39	115	33
TCCAGTTTCCTGTTCT	ref_4372_upstream	9	39	16	17	42	6	49	14	51	8
AGGGACTGACCGATTC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GTAGCTTTATATTATT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCTGATTTGAAC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGGTACGTCGTAC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCATGTTGAAAGG	alt_4372_upstream	11	17	15	17	25	9	24	5	30	8
CGCAACGAGCATTCTG	alt_4372_upstream	79	172	103	95	181	64	167	79	193	72
ACCGTTCACTTCGCTG	alt_4372_upstream	29	56	48	50	70	33	100	35	93	30
ATCGGTAAATGTCAAG	alt_4372_upstream	45	76	50	51	106	32	99	32	85	41
TAGTTAGATCGCAGGA	alt_4372_upstream	1	6	0	1	0	1	2	2	2	0
GATCTGTTAGAAGCCG	alt_4372_upstream	11	29	18	15	13	6	29	8	20	8
CATTCATGTTCATCCC	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCAGGCAGGTTT	alt_4372_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGCTATTAATAAC	ref_4372_upstream	25	55	35	21	66	31	60	21	66	16
CGCCGCAGAAGAGTTC	alt_5953_new	28	34	34	29	44	22	42	38	43	25
CGGCGGCCTAGTTCCT	alt_5953_new	71	55	76	60	55	49	43	58	49	59
CCCATTTGCCCTGGGT	alt_5953_new	32	19	49	28	24	35	38	27	40	39
CATATGCATATTATGG	alt_5953_new	108	62	120	75	80	75	63	81	86	92
CAGGGATACGTTTTAA	alt_5953_new	26	25	45	31	27	32	20	37	33	21
CGTACCTGTGGCCTAA	alt_5953_new	6	10	12	7	14	11	14	5	13	15
CTTTCATCTCTTTGGA	alt_5953_new	17	10	14	26	18	19	11	24	9	16
GTGCTCTTTGTGTATT	alt_5953_new	0	0	0	0	0	0	0	0	0	0
GTCCTGCCCCAACGCA	alt_5953_new	108	66	128	105	87	82	54	82	85	86
GAGGGGAAGTGACTAA	alt_5953_new	38	52	66	49	60	50	65	76	56	56
CCAAGTGGAGGTCATG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
GAGTTCCGTAAATTGT	alt_5953_new	78	73	90	92	61	78	75	69	98	62
TTTGCTGCCCACAATT	alt_5953_new	86	70	129	113	76	127	82	89	82	92
CCGTCTCGGTAGACAC	alt_5953_new	24	45	21	37	43	28	45	28	42	24
AACCCAGTTCGATTTG	alt_5953_new	1	8	6	4	5	6	3	8	9	4
TCCATCCCCGCGGAAT	alt_5953_new	0	0	0	0	0	0	0	0	0	0
CGACCGCACATGGGTT	alt_5953_new	0	4	2	3	1	2	4	1	1	2
CGCTGCATTCCTGGTC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TTAGGTGTCGTTAGGA	alt_5953_new	22	28	36	26	34	21	32	31	32	19
ACCCCCGGGCCTTCCA	alt_5953_new	0	0	0	0	0	0	0	0	0	0
GAATACTTTGGCGTTG	alt_5953_new	9	8	12	5	12	12	9	16	8	11
ATGCTTTTTGAGTAAA	alt_5953_new	32	24	41	31	27	20	34	28	44	25
TAAAGGGGATTGTCAT	alt_5953_new	0	0	0	0	0	0	0	0	0	0
ATTTTGGCCTGCGGTA	alt_5953_new	0	0	0	0	0	0	0	0	0	0
AAGCTATAATTCATGC	alt_5953_new	22	29	40	24	15	32	25	31	19	20
GCCTCCGTTGACATAT	alt_5953_new	6	11	8	13	13	8	8	8	5	8
CTGGTGCATGAGGCAT	alt_5953_new	25	25	19	18	21	16	24	14	15	14
CTATTCTTTTGACCTC	alt_5953_new	8	13	10	8	6	11	3	11	14	8
CACAAGACTCGGGGTC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TCTTCTTCGCCTCATT	alt_5953_new	0	0	0	0	0	0	0	0	0	0
CACAACATGTCGTTTG	alt_5953_new	20	16	30	19	16	25	20	13	12	14
TTCGAAAGACTAGAAT	alt_5953_new	13	21	42	23	19	28	19	19	17	23
TTCACCCGATACGTAC	alt_5953_new	19	14	25	15	19	31	20	18	16	6
CTATGTCGGGTATACT	alt_5953_new	14	8	12	15	7	16	13	14	10	15
CCGATGCGTCGGCTCA	alt_5953_new	20	9	12	19	16	9	20	11	19	14
TTTCGTTTGTCATTTC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TATTTGCTGACGCAAG	alt_5953_new	164	130	186	177	134	154	116	143	143	143
CAAGGATCTTCTGGCC	alt_5953_new	25	23	22	28	8	27	20	16	23	17
TGCGCGTGCATGCATA	alt_5953_new	68	51	87	73	83	58	57	73	57	70
GTGTATCACTCGAGGT	alt_5953_new	34	30	54	51	45	32	50	41	40	38
TAGTGCGCTTTGCCTG	alt_5953_new	193	186	221	203	205	162	194	180	205	154
GCTTCCGCTTTTCTCG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
ATAACTCATGAACATG	alt_5953_new	6	14	11	10	10	8	14	7	7	11
TTGTCGGTTCTGTGAC	alt_5953_new	17	17	11	18	21	20	18	12	19	15
GGACGGACGCACAGAG	ref_5953_new	306	208	359	348	216	267	257	267	241	295
ATTAGTTTCATTAGTC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
ATCATGTGATTAGTTG	alt_5953_new	20	14	21	15	11	9	9	24	17	17
CGGTCTCCCCGTTGGC	alt_5953_new	1	4	0	1	12	1	2	0	8	1
GGGGTGCCTGCTTATG	alt_5953_new	100	89	135	122	101	90	99	109	115	117
TCGTTATCCGTCGGTT	alt_5953_new	157	165	222	176	132	124	134	152	141	139
CCTCCAATTACATGGC	alt_5953_new	76	75	94	88	66	87	64	78	77	55
GGAACTAGAACATCTC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
CGTACTGTTACCTGCG	alt_5953_new	51	41	49	62	44	51	55	52	54	34
CTGATTATGATTCTGC	alt_5953_new	50	58	58	42	31	30	48	53	52	42
TGTATATTCGGCATCC	alt_5953_new	6	8	9	5	8	6	1	10	7	2
CGAATTATGCCATTGG	alt_5953_new	24	20	23	18	27	22	25	11	32	9
TTCTTTCGTCATGTAC	alt_5953_new	55	62	77	64	59	58	86	58	81	52
CCATGGCAATCTGATC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
CTCATGCAGCTATCAC	ref_5953_new	10	16	15	18	22	14	24	20	27	18
GTACCCCAACGTCGGG	ref_5953_new	18	18	20	8	14	27	13	16	20	21
ACCCGTATTGGTAATT	ref_5953_new	66	79	93	60	81	52	73	52	95	74
ATTACTTCGGCCTTAA	alt_5953_new	54	28	63	49	30	29	46	29	31	26
GCGCCCATGGATATAT	alt_5953_new	28	27	35	25	20	19	26	35	24	29
ACACTACCATACTTAA	alt_5953_new	1	0	0	0	0	0	0	0	1	0
TCGTGGTCCGGTTAAT	alt_5953_new	29	33	51	46	26	36	18	39	30	27
TTATATTCGTTAGGTC	alt_5953_new	34	23	33	24	19	29	23	26	36	28
CGGCGCGGCTTACATC	alt_5953_new	59	46	70	48	33	43	33	53	51	45
TAGTTAGGACGATCTC	alt_5953_new	153	144	203	142	111	155	127	98	96	128
TCAAGCACGTTTCACA	ref_5953_new	16	18	28	29	23	13	25	19	28	23
TTGTTCGATGAGGACG	alt_5953_new	63	64	113	84	57	89	71	75	75	80
GTGGCGTATGGACATC	alt_5953_new	202	140	234	177	154	175	195	214	169	163
CGAAGCTTGGATTCGG	alt_5953_new	10	12	14	14	15	18	13	7	10	16
GCAAAAGCCACGCTAG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TGTTTACATGAATGTG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TACCCGCCCGTCTAAC	alt_5953_new	22	16	16	20	27	17	17	26	19	11
GAGTAAGCCACCCAGG	alt_5953_new	147	130	213	180	158	160	158	152	184	146
TCCGTTTCGTCGCACA	alt_5953_new	0	0	0	0	0	0	0	0	0	0
GTTTCGTAAGCCCGAG	alt_5953_new	26	21	43	35	27	27	23	26	35	33
AGCATATTACTTTTTT	alt_5953_new	16	14	12	17	14	13	11	15	6	10
CAGGGCTGGTTCCCGA	alt_5953_new	28	20	28	23	21	16	23	15	25	19
ATGATTATGTTGAGTT	alt_5953_new	17	16	20	20	21	17	22	10	22	24
TCGGGCTATAGTGCAA	alt_5953_new	63	61	85	71	51	63	61	68	70	63
ATGCATGAGTGACGTT	alt_5953_new	73	54	90	71	58	80	72	72	77	71
GACTCTCTTGATTCGA	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TCCCCCTTAGATCTCA	alt_5953_new	32	56	47	26	48	27	54	25	62	28
TGCACCTTCTAGAGGC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
AGCGGAGCGCGTTGTG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
GGCAAGCCCTATAAAA	alt_5953_new	71	66	90	66	74	70	76	76	95	52
CCCATCGTGTAGTGAA	alt_5953_new	13	10	19	14	12	22	11	17	7	14
ACGTTATTAGCTTGGA	alt_5953_new	2	6	4	9	2	5	3	3	7	5
GTGTCACCCGTTGGAT	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TTGGTTCTGTCAGATT	alt_5953_new	8	11	13	7	9	10	12	11	8	2
CGGGTTCCTGTGTGTA	alt_5953_new	33	37	48	24	38	23	29	30	23	27
CGGATAAGATATCCGG	alt_5953_new	2	1	6	1	2	1	4	2	1	2
ATCCCTTCTTCTGCCG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TACCTCTCACAACTCA	alt_5953_new	9	7	17	15	9	13	10	7	15	5
TAGCACGCACAGTTTG	alt_5953_new	31	38	49	31	28	27	28	23	28	19
GCCACCGTCATGTACG	alt_5953_new	6	11	6	8	5	1	6	4	3	4
GATTTTTATGGTATGA	alt_5953_new	2	1	1	2	1	1	2	0	0	1
CTGTTACCATACGATT	alt_5953_new	0	0	0	0	0	0	0	0	0	0
CTACAACCCGCCGGGT	alt_5953_new	290	322	372	305	313	239	281	285	320	248
TTTACCGTGGCCCCAC	alt_5953_new	63	59	78	72	51	71	71	69	63	56
TCACTACCATACTTAA	alt_5953_new	140	128	168	152	141	140	182	136	153	132
TCTGCGGTATTTGTGG	alt_5953_new	46	35	65	52	33	41	32	39	40	45
CCGCCGTAAATATGAC	alt_5953_new	12	6	9	13	16	20	21	13	17	18
GTCGATCCTGTGCAAA	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TCGCGAAAGGATTTCC	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TAAGAAAGCTTCCAGC	alt_5953_new	28	30	33	25	22	19	25	27	27	23
CCCTATTCGGTCGTCG	alt_5953_new	5	11	8	6	10	10	7	17	7	4
GTTGAGCGCTCCCAAT	alt_5953_new	27	24	40	43	23	28	28	31	27	22
GGCTGTTTTCGCATCT	alt_5953_new	36	31	54	38	26	40	29	36	32	44
TGTATAAATAGATTTG	alt_5953_new	44	31	48	38	42	41	36	40	43	41
ACAGCTTCAACTACCC	alt_5953_new	51	63	72	55	97	45	84	55	98	51
TTGGCATCTCAGCTTA	alt_5953_new	89	75	87	79	65	62	81	73	54	100
CATTTCATCAATTTTC	alt_5953_new	90	55	88	80	55	68	75	72	53	55
TTCGCTACAAAGTGGG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
CCAGGAAGCAGTGGTT	alt_5953_new	61	44	51	36	54	51	62	49	59	40
GTTGTACTGCCCCTTT	alt_5953_new	52	36	64	48	57	63	49	61	57	38
TACAATGTCAAGCTTT	ref_5953_new	3	5	2	4	2	7	5	2	7	4
TCGCCGGGTTCTTTTC	alt_5953_new	47	44	61	65	36	60	40	46	34	68
GGAGTGAGGGCGGGGC	alt_5953_new	11	8	3	3	8	5	8	7	2	8
CGAACGTTTTGTTTTG	alt_5953_new	99	101	114	90	87	80	72	81	94	87
CGATGCAGTCTTCCTC	alt_5953_new	7	7	3	11	7	3	3	1	6	8
TAGTAGCTTGTCTGTG	alt_5953_new	0	0	0	0	0	0	0	0	0	0
TTACTCGAGTATTATC	alt_5953_new	37	39	47	56	36	32	22	33	39	33
CCGCCGCAAGCCTTGG	alt_5902_new	19	6	24	19	7	9	14	11	15	13
TTTTTTTTGGCTGTAC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CTGCCGTGGGGATCAC	alt_5902_new	2	2	3	2	4	0	1	0	0	1
GGAGGGCTATAACACT	alt_5902_new	12	14	15	12	17	13	16	18	14	4
TGTCCCGCTAAATTTT	alt_5902_new	27	26	43	25	22	30	28	26	47	22
TCCCAAGGAATCGCGA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
ACCGCGTTGGCTGTCA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GAGGTCCCTAGACTTC	alt_5902_new	6	4	11	9	5	6	8	8	5	2
GTATTCTCCAAGGTCA	alt_5902_new	24	29	31	24	40	17	33	29	41	21
TGGGGGTTCCCTTGTT	alt_5902_new	16	26	22	15	18	22	19	12	15	15
GTACACCTCTTTCTCA	alt_5902_new	5	9	6	4	3	2	3	2	2	3
CAGCTCATCAGGCGGT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CGCTCGAATATATACA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CTTTCTGTGCTGTCGA	alt_5902_new	13	17	26	21	23	20	16	16	30	17
TCGTGCTCAACCCGTG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GCAGAATTCCCACTCC	alt_5902_new	23	19	39	24	28	24	15	26	28	22
AGCCTCATGAGATAGG	alt_5902_new	70	75	62	55	67	61	69	41	73	48
GCCTGTTATATAATTA	alt_5902_new	19	28	25	13	20	15	23	15	31	17
TCGATTCGTTGAAAAC	alt_5902_new	25	37	31	29	26	26	42	20	29	26
GATGTCTATTCATTGG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTCTGTGGTTTCATAC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CACGACCCCTTTGGGT	alt_5902_new	24	40	38	39	38	40	45	35	63	42
TCCATACCGCCAGTTC	alt_5902_new	12	24	13	18	24	23	23	15	24	18
CGGTGTGCCTTGACTC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TGGGTATGTGGGAGCA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTTTAGCTTGAGCCCC	alt_5902_new	47	65	44	59	48	33	52	27	83	38
GGGAGTTTAGGTAGCA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CTTTAGCGGCGTGATA	alt_5902_new	12	13	5	12	10	4	11	7	13	5
AGGTCCCTAGGCGGGG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TACGGTCTCAAATGCA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTTAACCCCTTCGAAT	alt_5902_new	12	20	24	18	20	15	23	23	23	16
GCGTTTAACAAGTTCA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTGTTCGAGGGCCTGT	alt_5902_new	203	255	251	201	259	208	274	188	273	200
TTTAGGACCCGCCAGT	alt_5902_new	11	20	27	14	9	17	17	16	22	13
TTCATCACGCTTTATG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
AGATGCGCTCTAGTTA	alt_5902_new	18	21	16	25	19	19	16	22	13	27
ATCTCCTGAAATTCAA	alt_5902_new	75	69	84	70	80	69	87	72	87	49
CCATAGAAAGTTGTGT	alt_5902_new	88	92	114	92	111	96	107	90	108	82
CTGCCCTGCTGCCGGT	alt_5902_new	38	48	65	53	44	42	39	34	43	43
ATGAAGCACCTGGAAC	alt_5902_new	20	24	26	18	36	15	35	14	36	19
CTGTGCTTATCCTAAG	alt_5902_new	7	2	4	3	7	6	4	2	9	7
CCTTTTAGACCTGGCA	alt_5902_new	8	12	13	13	26	8	7	3	11	6
GCCCAGCATGATTAAG	alt_5902_new	11	8	12	14	13	13	7	8	13	7
CTTTCCAATGCCCATC	alt_5902_new	118	138	149	137	131	104	116	103	148	120
ACCGTTCTGTGTCAGG	alt_5902_new	9	26	8	4	14	9	12	5	16	9
TAACAGCTATACCAGC	alt_5902_new	10	23	26	24	12	16	29	13	31	15
ATCTTATTATAGGTGC	alt_5902_new	52	59	47	37	45	27	56	36	65	36
CACAACAAAAATATGG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TCGATGCATGCCTTTA	alt_5902_new	69	64	68	50	55	44	71	58	73	48
GAGTAGAGTGGCCAGT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TCTTGCGTCCCGTGAC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTTTTCTGCCCTGGTG	alt_5902_new	26	43	46	29	42	31	42	31	41	30
TGCGGGCCGTTGGCGC	alt_5902_new	25	35	30	29	51	14	30	27	43	14
ATGTTAGCCGCTCTTC	alt_5902_new	25	31	32	21	21	18	42	21	26	23
TAGTACTTGAGAGCGT	alt_5902_new	15	6	18	10	21	13	25	9	17	14
GTGAATGTCTTATGAC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GGGATCACCGTTGACT	alt_5902_new	27	22	36	25	26	19	27	18	27	20
CGCCTGCATCGCATTT	alt_5902_new	55	58	64	43	66	59	53	42	84	49
GGCGAACAAGACCCTC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CTGGGTTGTCTCCGTG	alt_5902_new	19	17	17	14	20	14	27	21	20	12
CCGATGAGTTATTGAG	alt_5902_new	1	2	0	0	0	2	3	0	1	3
CTGTACCTCTTGAGCA	alt_5902_new	21	17	27	20	21	23	27	21	28	17
GGGACCAAGTTCCATA	alt_5902_new	45	65	50	30	31	42	63	33	40	35
GTGAGGACCCCTGACC	alt_5902_new	6	3	13	5	3	5	7	13	4	6
GTCACTGCAAGGGTTT	alt_5902_new	2	13	7	4	5	5	6	4	9	15
TGACGTTATTTTTCCG	alt_5902_new	57	42	81	68	42	56	46	48	52	44
AAATAATACCAGCACT	alt_5902_new	33	32	36	36	32	38	46	46	35	33
CCGTTACGTAAGAATT	alt_5902_new	28	42	43	30	39	40	30	30	26	33
AAAACCTGGGGCTTTG	alt_5902_new	31	24	33	34	44	33	45	33	51	41
TGTAATGGTATCTATT	alt_5902_new	20	27	29	22	35	16	23	21	37	16
CATTTGGATAAGTACA	alt_5902_new	77	123	101	97	128	79	134	94	143	65
GTCGTCCAGTTTTACG	alt_5902_new	18	25	20	26	27	14	24	20	27	18
TATGGGAGTCAATTGA	alt_5902_new	5	7	10	10	9	4	7	6	5	4
CTTGTAGTCTATACCT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
AACTTACGGATTCCAA	alt_5902_new	23	23	26	22	18	11	16	25	20	22
GACACACCAGGAGGGC	alt_5902_new	15	12	20	13	16	7	15	12	10	13
GACGCCGTCTAGCCAC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
AGCACAGCAGAGTGTA	alt_5902_new	0	0	0	0	0	0	0	0	0	1
CTCTCTCGTATGGACC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
ATACAGAACACATTCC	alt_5902_new	4	4	1	10	1	2	16	5	8	2
GGTCCGGAGATGTCGC	alt_5902_new	6	12	22	8	21	8	11	14	22	11
TGTTAGGGCCGTATAG	alt_5902_new	13	15	12	11	15	14	26	14	16	17
GCTTCGTTGAAGACTC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
AATGGGAACATCCTCA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTGCAGTGTTTCTGTA	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTGGAGTGTTGTCTCC	alt_5902_new	3	5	4	7	2	2	3	5	2	2
TCACTAATAATGACTG	alt_5902_new	12	9	13	12	19	12	19	18	19	8
CGGTGCTGTCGCAGCG	alt_5902_new	95	93	104	94	96	106	97	81	93	92
TTCGTATTTTTTTTGG	alt_5902_new	13	3	19	16	26	11	15	10	20	9
GTCCTCCGTCGTCTGT	alt_5902_new	8	20	9	3	14	5	15	5	12	6
AACGTATTCGAATCTA	alt_5902_new	1	4	7	12	5	8	14	4	6	4
GTATACAACTTATGCA	alt_5902_new	8	9	4	8	10	6	12	6	15	2
GAATTTTCCCGCTAAG	alt_5902_new	10	11	5	6	4	6	10	9	6	10
GTGGGAGGCCATTATT	alt_5902_new	70	67	67	52	62	48	79	54	64	58
CTCGGCAAAAACGGTA	alt_5902_new	11	17	16	9	8	21	21	11	17	12
CCGGTTCCAACGGTAT	alt_5902_new	9	13	15	16	16	14	17	10	14	11
GTGTCACGGTATGGGT	alt_5902_new	10	10	22	19	26	14	15	18	23	20
TCGCATTGGTATACCT	alt_5902_new	115	142	129	108	138	101	144	94	133	101
TCTACCTCTCCCTGCT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TGCTTGATAGCTACTC	alt_5902_new	10	11	21	13	15	15	14	10	13	14
CTCGTACGCGATATTA	alt_5902_new	35	39	36	56	33	35	49	33	36	17
TCAGCTCTAGTAAAGT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GTCTCAACGTGGCGGT	alt_5902_new	12	4	10	13	24	11	7	11	10	7
GGTATAGCGGTTAAAC	alt_5902_new	10	18	12	10	12	16	20	13	10	2
GCTATAGCCGCATCTA	alt_5902_new	16	9	21	15	13	25	18	11	18	15
TAAATCATTTACTATA	alt_5902_new	20	10	12	13	12	11	13	11	15	5
ACCATACGTGAGTGAT	alt_5902_new	55	58	64	56	65	44	62	41	65	43
TAATCGACGCGACTCA	alt_5902_new	1	2	1	1	2	1	3	1	1	0
CCACCCACGTGCCCTG	alt_5902_new	261	253	312	305	265	250	250	236	298	251
TTCTTCTGGTGTAGCC	alt_5902_new	4	5	7	13	9	8	6	4	5	4
TTTGCACCATTTACGC	alt_5902_new	12	11	22	13	17	6	16	7	13	9
CTTGAGCTGGCGTGTT	alt_5902_new	13	11	12	13	12	10	12	16	11	6
TCCACATGCACGATTG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CTCGCGCCCTCTTGGG	alt_5902_new	10	15	6	3	8	10	13	7	15	9
CATGACAAATTACTTT	alt_5902_new	26	30	42	31	29	29	47	39	34	24
GCTACCCGGCCAGTCT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GTAGAGTTCACGGTTG	alt_5902_new	6	4	6	2	8	4	8	1	3	2
AATGCGACCATCTAAC	alt_5902_new	9	15	11	24	7	10	15	10	10	12
TTGGCTCTCTTGATGT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GGCTATTCATGGTGGG	alt_5902_new	45	35	49	34	44	27	45	31	39	37
TCACGGCACAGCTGTC	alt_5902_new	5	12	5	10	19	15	13	7	6	7
GTTTTTTTCGAGAAAA	alt_5902_new	25	32	43	57	46	27	56	42	53	36
AACACGGCCCTGCCGG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TGGATCCGGCCACTGT	alt_5902_new	22	38	53	31	24	19	35	28	39	35
TTCCCTGGTGGGCAGG	alt_5902_new	36	52	51	38	62	47	46	38	59	41
CGCCTAGTACCAGTCT	alt_5902_new	17	22	12	14	26	16	22	13	21	9
GGAAGTTTTGACAGCG	alt_5902_new	1	3	6	2	7	1	9	8	2	0
CATAGCTGATTGTAAC	alt_5902_new	2	0	0	2	2	0	2	1	1	1
CCGGTTGTATTGGTGT	alt_5902_new	0	3	0	1	3	8	3	2	1	1
CTTGTCTTGAAGCCCG	alt_5902_new	14	12	16	10	9	7	9	3	12	8
CACTTCTGACTAGGCC	alt_5902_new	23	34	29	24	34	19	30	25	35	16
CGCCTGTTGCCGGTTA	alt_5902_new	17	19	23	12	23	14	22	20	12	13
TGATTTTAATGCTTTA	alt_5902_new	62	84	81	68	98	69	78	66	93	66
CGCATATAAAATTGGT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
ACCTTTATAATGGATT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTTGGATGGAAACTCG	alt_5902_new	85	134	105	89	124	99	127	75	115	89
AAAAACTTCCTTAGCC	alt_5902_new	134	150	152	157	147	132	165	125	148	131
TCGCCAACGTTATCGC	alt_5902_new	3	12	3	5	10	5	7	14	4	7
TCAACCCGATCCACCG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
CTGGTCCTTTCCAATT	alt_5902_new	14	21	15	18	33	14	33	22	30	17
TTGAACGCATCTGCAG	alt_5902_new	115	114	128	91	132	91	140	75	129	83
CTGGTATCACTATGTC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TCACGGTTCCCAAAAT	alt_5902_new	10	3	8	12	12	11	15	9	15	15
CGCTTGACATGTCCAG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GGGTATGTATATAGGC	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GACGAATCTGATCTCT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GCCGGGACCAAGAGTG	alt_5902_new	1	4	6	2	5	2	4	3	5	0
TTTTAGTTGGCATCTT	alt_5902_new	48	77	74	53	60	54	79	50	66	51
GTATTCAGTAAAGAAA	alt_5902_new	11	13	21	18	19	11	12	14	17	9
ATATAGCTATTCTTCC	alt_5902_new	21	27	17	15	15	16	20	13	19	16
CGTAATGGCAATTTTG	alt_5902_new	1	0	0	0	1	1	0	0	0	3
CAAGAATCAAGGCTGA	alt_5902_new	11	13	11	7	11	9	14	13	15	11
CGGAAAAAGACATACG	alt_5902_new	83	87	77	72	73	60	64	53	81	65
TATCGACAGTTAGTCG	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TCTACTGAAATGCGAT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
GCTTATCCTTGAGATC	alt_5902_new	0	0	0	0	0	0	0	2	0	0
ACGGTTGTAAACTCTT	alt_5902_new	0	0	0	0	0	0	0	0	0	0
TTTGACGTTGGTCAGC	alt_5902_new	1	1	0	2	2	0	6	2	0	1
TAGACTTAGTATTTTG	alt_5902_new	12	23	14	10	13	16	19	11	11	5
GGAGTAGATTATAATG	alt_6013_new	3	4	1	1	5	0	4	4	10	1
CGTAGGTAGCCACTTC	alt_6013_new	0	0	0	0	0	0	0	0	0	0
CGCGGATCCTACCGGG	alt_6013_new	14	24	26	15	27	13	23	9	21	8
TCATTTACAGTTTCAC	alt_6013_new	7	7	4	4	13	4	13	6	8	9
CACCATTCTCTGGTTT	alt_6013_new	68	102	71	69	105	57	111	66	113	51
TTTCATAAGCCTTCCC	alt_6013_new	0	0	0	0	0	0	0	0	0	0
TGCTCTTAAGTGGGTT	alt_6013_new	7	10	9	9	4	2	8	2	9	7
ATCTCGAATGCGATTT	alt_6013_new	0	0	0	0	0	0	0	0	0	0
GCATGCATCTGCAAGC	alt_6013_new	15	21	17	4	23	6	18	11	34	9
ACATGGATTCGCAATG	alt_6013_new	12	13	11	6	7	4	15	6	6	2
TTCCGCTTAGGGGTCT	alt_6013_new	4	2	1	6	3	1	6	0	2	3
TAATATCTGTGTTTTC	alt_6013_new	0	0	0	0	0	0	0	0	0	0
TGCAAGTATGTAGTTC	alt_6013_new	16	28	17	23	24	20	36	16	34	17
TCTGATTCGGGTCAGA	alt_6013_new	0	0	0	0	0	0	0	2	0	1
TTATTGAGTGCGTTGG	alt_6013_new	8	24	3	18	36	8	17	18	26	15
AATATGTGAAGGACGA	alt_6013_new	1	3	2	0	2	4	5	2	3	2
GGAACACGACCTCAAG	alt_6013_new	0	0	0	0	0	0	0	0	0	0
CTTTCCCGCTCTTGCA	alt_6013_new	0	0	0	0	0	0	0	0	0	0
GCTACTTATCTCTACG	alt_6013_new	2	13	4	6	9	7	12	1	8	5
TCAAGCATCGATTATC	alt_6013_new	0	0	0	0	0	0	0	0	0	0
TACAATGCCTTCGCAC	alt_6013_new	4	9	10	3	14	5	16	10	6	4
GAACTTTTAGTATTCC	alt_6013_new	0	0	0	0	0	0	0	0	0	0
ACGCACATTACAGACC	alt_6013_new	28	39	33	31	49	23	56	30	51	36
TCATCCTTTGGTTCGT	alt_6013_new	2	0	0	1	1	0	0	0	0	2
TGCGAATCATTTCATG	alt_6013_new	9	16	8	13	13	15	21	8	14	8
TTCGAGCTGGGGGCAA	ref_6013_new	0	0	0	0	0	0	0	0	0	0
TCGCCTCCAGGATAAT	alt_6013_new	0	0	0	0	0	0	0	0	0	0
GGATATCCCAAGCTTC	alt_6013_new	0	0	0	0	0	0	0	0	0	0
CTGTTAGACGCATGTG	alt_6013_new	36	87	50	37	89	33	84	26	98	44
AAATGGTGACAAGGGA	alt_6013_new	3	1	2	1	1	1	0	2	3	1
CGTCTATAGGCACTTT	alt_6013_new	64	116	68	54	90	54	97	41	115	53
GTGAACGACGTTTAGC	alt_6013_new	12	22	18	8	30	9	24	21	16	7
GCAATAAACAGCGCCA	alt_6013_new	5	13	16	12	26	8	29	17	29	10
ATTCGCCCCTGAGCGT	alt_6013_new	0	0	0	0	0	0	0	0	0	0
CCTCTGGCAGAGTGAG	alt_6013_new	0	0	0	0	0	0	0	0	0	0
GTGTTGTTTTCATCAG	alt_6013_new	35	65	45	40	76	32	75	36	67	38
TACAGTGACTGAGTGC	alt_6013_new	2	12	5	6	3	6	4	9	6	3
TACCGGCTACATCTGT	alt_6013_new	7	18	12	6	13	8	11	3	7	7
ACTGGGCTACCGGGCT	alt_6013_new	56	70	70	57	72	56	76	43	70	60
TATGCCAAGACCTACT	alt_6013_new	0	0	0	0	0	0	0	0	0	0
GGCTACTGGCAATTCA	alt_6013_new	11	14	17	8	15	9	18	3	24	6
GTTGCTTAATACGGGA	alt_6013_new	8	22	14	8	22	10	16	3	17	11
GATTCGGGATATAATG	alt_6013_new	5	3	5	3	4	2	8	6	2	2
TTCATATTGTTACCCA	alt_6013_new	9	21	16	7	25	10	22	11	10	10
AGTTAATTATTTAAGC	alt_6013_new	27	85	57	37	81	32	75	30	83	34
AGCGTCTAGGGGATAA	ref_6013_new	57	111	67	59	104	58	113	77	97	57
TATCAAGGGTCACGGG	alt_6013_new	9	14	15	16	10	17	8	2	22	12
TTGGTTGGAGTCCGAT	alt_6013_new	3	5	2	3	4	1	8	2	8	7
GTATTTTCATTTTGCC	alt_6013_new	0	0	0	0	0	0	0	0	0	0
TCACCCAGTGCCCTGT	alt_6013_new	24	33	20	7	25	20	45	22	32	23
AATGTTAGCGTCTCTG	alt_6013_new	0	0	0	0	0	0	0	0	0	0
TCTGCAAAGTCAAGGC	alt_6013_new	31	29	35	21	37	23	59	19	26	23
CCTGCGGCGGTCGCAT	alt_6013_new	7	15	10	7	9	10	13	3	12	7
TTTTGCCTTCTCGGAG	alt_6013_new	17	12	17	23	30	9	30	22	34	13
CAGGGTACCGTCCTTG	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
AATATTCGGCTACATC	alt_939_fdr	10	8	13	18	10	11	15	8	13	15
GTCATTGATCGGCCCC	alt_939_fdr	4	1	4	2	5	4	1	4	2	3
ATTATTCATTGCCTTC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TGCACCGATATTGGGT	alt_939_fdr	6	2	7	6	1	7	4	6	4	3
TCAAAGTTTGGGATTG	alt_939_fdr	2	1	0	1	5	2	1	0	4	2
CTAACGTCAACCGTTT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCCGGGCGTTCAT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CACACATCGAAAAAAT	alt_939_fdr	9	19	18	11	37	20	18	10	17	14
TTAGGTATTGTTGACA	alt_939_fdr	62	73	69	55	57	51	58	52	76	65
TTCTCTTCTTCCAATT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTGCGCTATTTAA	ref_939_fdr	9	22	20	19	33	16	19	7	20	16
AGTCTCTCATTCATCG	alt_939_fdr	72	83	93	98	102	78	78	70	113	70
AAGCTTCCCGATATGG	alt_939_fdr	28	41	33	27	40	35	44	28	40	31
TTTGTCATGGTCCGCA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
AATACTAGGGAAGGAC	alt_939_fdr	1	1	4	2	3	6	3	0	2	1
TGCTCGCGCGTTTATT	alt_939_fdr	21	18	11	22	21	11	16	12	15	11
GAGCCGTACTCTTTCC	alt_939_fdr	114	108	152	126	131	107	104	100	118	108
TGTCTCGCGGTGACTC	alt_939_fdr	29	24	35	40	22	34	15	28	22	21
TGATCTTAACCTGGAA	alt_939_fdr	27	12	17	17	9	7	7	10	22	17
GCTGATACGTCTCTAC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TTCACTCAGTCCACAA	alt_939_fdr	8	6	2	8	3	4	5	6	1	7
CCTGGTCATCTATTCC	alt_939_fdr	16	16	10	12	23	16	22	9	17	13
CCAAGTCCTTCTCGTA	alt_939_fdr	43	67	58	35	67	53	39	44	58	52
ATGGACTGCCCGTGCG	alt_939_fdr	9	24	14	14	15	23	14	8	8	11
GGGTCTTTACGCTTTA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTAACTCGGGATC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCATAGGAGAACC	alt_939_fdr	21	28	14	18	33	14	21	12	33	13
GGTCTTGGGATCACGG	alt_939_fdr	25	20	18	21	25	19	23	21	16	31
TGAATGTGGAACTAGA	alt_939_fdr	127	157	164	128	157	129	132	136	141	124
TTTGGGCCTTTCGGCC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TACTCACATTCTCTAG	alt_939_fdr	20	20	23	17	23	10	22	16	15	23
TACCCGTCGGTGCATA	alt_939_fdr	3	6	4	3	7	0	6	4	7	2
CTCTACTCCGTGCAAG	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
GAGATTGAACTGGCCC	alt_939_fdr	25	26	20	21	13	18	29	19	20	14
CGTATGCCGAAACCGT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
GCCCAGTGTTAATGCG	alt_939_fdr	12	21	18	24	14	16	29	19	29	14
ATCCCAGGTAGAGCTT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
AACGCGCGAAAGGATG	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTCAACCATTGCA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTAATATTTTCAG	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCAAACGTCGAGT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGTTTCTCTACAT	alt_939_fdr	24	40	24	28	41	22	48	21	50	26
TGTCTTCGGGGTGAGA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
ATACTAAAGTGCTAAT	alt_939_fdr	30	34	44	24	37	29	47	24	44	19
CGCGAGTCCTGAGATC	alt_939_fdr	22	35	26	24	39	31	20	24	32	22
TCCGCTATAGCAACGG	alt_939_fdr	5	4	1	3	2	4	8	1	5	0
GCGCTGCCATTCTAGA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TACGTTCGGTTTTTTT	alt_939_fdr	3	3	4	3	4	1	0	1	3	2
GTGCATCTGATCGGCC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
AAAGATCCTCTGGCCT	alt_939_fdr	17	15	18	11	15	6	23	12	25	17
CATGAATCTACCTTCT	alt_939_fdr	10	8	20	21	17	5	16	17	15	7
CGTGCGTTATTCATCC	alt_939_fdr	46	45	58	52	46	64	48	52	59	45
CCCGCCCTGGTACTGT	ref_939_fdr	2	2	2	10	1	5	10	8	9	6
TACCCTATTTACCTCT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CGACCATAGAATGCAA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGACCGTATGACG	alt_939_fdr	22	30	17	22	37	14	21	21	28	20
TTACGACTCCATGCTA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGCTTAGGGCATA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
GATAATCGTGCTATTT	alt_939_fdr	30	26	45	21	32	24	35	25	28	25
GCGCTGTTTCCTCCGC	alt_939_fdr	14	17	24	15	15	11	16	11	17	21
GCGTTAGTATGTCTTC	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
ATATACCGTATTTTTT	alt_939_fdr	1	5	1	5	2	3	0	1	4	1
CCTATCTGTGTTGTCC	alt_939_fdr	0	7	0	3	5	0	3	1	8	2
TATGGTTGCGTCTCCC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGCCTGATTCGAC	alt_939_fdr	12	7	9	15	9	7	7	9	6	9
TCTTTCTAACCGTGAG	alt_939_fdr	8	9	7	5	8	11	6	8	8	5
TTAGATCCGGGCGTTT	alt_939_fdr	18	16	21	18	16	16	15	13	17	5
GATAGGTGTATAACGC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CACCATTGTTCAGTAC	alt_939_fdr	9	11	11	6	29	10	9	11	9	10
CTTCCTCTTCGGCCGG	alt_939_fdr	0	1	1	2	0	0	4	0	0	3
CACTACCCCGTCCCCA	alt_939_fdr	6	136	10	9	127	6	133	6	148	8
CTAACCGTTCGCTCGA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAGGGACCTAATT	alt_939_fdr	77	64	131	97	79	85	109	97	116	85
ACCGAAACGCTAGTGT	alt_939_fdr	83	91	108	95	83	86	85	88	83	85
ATATGGACTTCTGTGC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTTCCTGCGAAAA	alt_939_fdr	174	168	198	159	186	173	192	147	190	146
TGTGTTTGCTAACTTC	alt_939_fdr	7	10	16	6	5	8	13	4	8	14
TCCAGGGATATTAATG	alt_939_fdr	89	95	91	81	109	81	106	78	126	71
ACCCACTTCGTTACGT	alt_939_fdr	9	19	14	13	15	10	10	11	13	11
GAACCTTCAAAAGCTA	alt_939_fdr	6	5	1	3	6	1	6	6	6	3
TTGGTTAATCGACTAC	alt_939_fdr	41	62	51	59	47	57	76	42	65	42
ATTGCATGACATAAGG	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
GACTTATGCTCGGACC	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CATTGTCTGTTCACCG	alt_939_fdr	63	87	80	87	88	80	93	67	87	80
AGCGGTAATAGACTGC	alt_939_fdr	8	15	15	12	9	12	19	6	18	7
TTTTAAGAATCAGAGG	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTAGCTAAAAGGC	alt_939_fdr	20	15	12	21	14	15	14	12	17	10
AGGACGCACTCACAAG	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTGCATCTTAAA	alt_939_fdr	98	113	92	73	104	83	102	74	120	68
TCTCAAGTATGAAGTA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
CATAGCGTGATCATGG	alt_939_fdr	139	134	188	135	118	163	132	152	141	133
CACCTATTGATACCAT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
GATTTTAAGGGCTCGA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTACGGGGGTTTG	alt_939_fdr	22	19	23	21	21	19	15	22	22	14
TCAAATAGTATACGGT	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCATAGTGAGGAT	alt_939_fdr	16	20	23	13	10	21	17	11	14	17
CTATTGCGCTATTTAA	alt_939_fdr	0	0	0	0	0	0	0	0	0	0
GTCATGATGCCGTAAC	alt_939_fdr	30	20	36	22	32	22	28	28	26	26
TCCATTCATCGGCTAT	alt_939_fdr	84	89	85	95	82	69	109	56	86	65
TAGGCCCACGCAGATG	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
GAATAGGTAGAGCGTA	ref_4003_reverse	98	53	117	118	52	85	42	84	52	66
AGGATGATATTGCAGA	ref_4003_reverse	106	54	151	98	55	89	50	114	59	109
TTACGAACTACTTAGG	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TCTACTGATCTCTATC	ref_4003_reverse	87	49	98	97	61	72	61	77	33	80
GTTCCGGATGTTAAAG	ref_4003_reverse	10	8	16	14	17	17	6	12	4	15
TGATACAGTGTGCTCT	ref_4003_reverse	51	32	94	60	26	51	41	75	28	51
TTTGCGATTTAGTCAG	ref_4003_reverse	7	0	3	2	3	4	6	2	6	1
GAGCCGCGGGTTTTCT	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TAACGGGAACGCGCCA	ref_4003_reverse	108	44	125	105	47	112	50	111	46	102
AATTCCAGCCTCCAGT	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTGCGCTTGATCT	alt_4003_reverse	151	94	204	183	76	174	98	144	76	162
CAATGACTTAAGGTAC	ref_4003_reverse	203	112	258	173	93	184	97	160	105	197
CAATGAACTAATTGTC	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
GCTTAGTGATAGTGAC	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
CTTAATAGCCTCGGTA	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
GAATCGTTGACATACT	ref_4003_reverse	174	75	161	159	51	162	96	139	87	145
CGTGCATTAGTTTTTC	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
AACGGGTAGCATTCTC	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TACTGCACTTGCATTG	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
GCATGTTATCGTAAGC	ref_4003_reverse	77	55	106	97	52	69	48	84	47	70
TCAGTTAGCTTCTTGT	ref_4003_reverse	73	30	103	104	23	65	32	76	38	65
CTTGGGTGGTTACGCT	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGGTACATGGCTG	ref_4003_reverse	40	25	62	49	20	63	13	48	23	36
CTTCTGCGTTGTCCAA	ref_4003_reverse	24	35	34	37	35	28	28	47	29	27
GTGGTCGGTATATGGC	ref_4003_reverse	13	8	28	17	8	7	16	17	12	9
CAGTGTTACTAGAACT	ref_4003_reverse	31	13	29	32	8	24	10	29	19	15
TGGATCTTTTGTTGAT	ref_4003_reverse	237	108	279	227	118	228	114	232	132	184
GGAATTGTTAGTCTTC	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
AACGGGTAGCGTTCTC	ref_4003_reverse	161	96	209	188	78	186	102	229	79	181
ACACATTAATGGATCG	ref_4003_reverse	54	21	75	62	17	69	31	63	33	49
TTTATACCTATGTTAA	ref_4003_reverse	117	51	145	119	71	120	62	140	73	115
TTGGTTCGTTAACGGG	ref_4003_reverse	84	50	121	98	52	88	60	90	41	77
TCCTACTCTTAGGCTG	ref_4003_reverse	118	60	122	114	63	74	81	117	82	104
AATGACTTTGCTCCAT	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGAATTAGTACCA	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
GGTGAAAACTTGGTGT	ref_4003_reverse	20	12	37	20	16	13	14	23	13	24
ACCAATCGTTGCCGAG	ref_4003_reverse	53	19	69	65	36	47	37	50	27	52
TCTTTAGTCGGTTCGG	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGCATTATATATA	ref_4003_reverse	109	47	111	91	53	108	57	101	52	92
CGGGCCATTTGTAGAC	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGTCACCTGATAG	ref_4003_reverse	54	24	65	60	27	45	26	33	33	38
TCCCGCGGGCTAGTGA	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TGCATATCGTCGGTGA	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
GTCATCTTCTCGGTGA	ref_4003_reverse	171	72	199	185	82	180	78	212	76	180
CTGCCATCTCTGTTCG	ref_4003_reverse	33	24	34	35	21	26	19	27	18	20
ATTGCGCGGGCGTATC	ref_4003_reverse	106	62	124	83	49	90	71	62	71	87
TTTGCCTTTATGATGC	ref_4003_reverse	108	47	176	120	50	100	50	101	64	103
GAATAGCTTATTCGCT	ref_4003_reverse	26	15	46	32	22	20	19	44	14	37
ACAGCGACGTGAGACT	ref_4003_reverse	421	651	527	498	715	450	701	468	716	443
CCGGCTGAAGCGGCCG	ref_4003_reverse	18	11	11	23	5	18	14	19	15	17
TAATGCCACCTTCTTC	ref_4003_reverse	64	42	101	84	43	81	62	58	57	83
GCCGGGCTATACGCCA	ref_4003_reverse	9	5	22	6	4	10	5	9	9	11
CTGTTTTATGCCCCAT	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TTATGTTAATCTTTCC	ref_4003_reverse	90	52	154	109	44	95	41	92	48	80
TTTGTTAGTATTCCTG	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCTCACATTGTCG	ref_4003_reverse	26	14	43	19	15	25	11	21	20	14
CAGACACCGGTCAACT	ref_4003_reverse	96	55	117	117	77	98	85	94	72	74
ACGCTATATTTACGTC	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
ATACACTGTTCCTAGG	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAAGGAGGGTTCA	ref_4003_reverse	123	46	144	112	66	87	71	97	68	101
TGATCCACGATGTTCT	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TATAACTTACTCTCCT	ref_4003_reverse	45	20	47	46	27	24	21	35	25	43
ACAGCGACGTGAGCCT	ref_4003_reverse	0	1	0	0	0	0	0	0	0	0
TAAAATCACGAAGCAT	ref_4003_reverse	165	82	204	199	94	183	69	198	74	153
ATCTTTTTAGTCTGCA	ref_4003_reverse	0	0	0	0	0	0	0	0	0	0
TAAGATCTTGAAACCA	ref_4003_reverse	75	34	72	69	17	54	28	42	26	70
AGATCGTCACTTCTCG	ref_6112_new	1	1	3	0	0	3	1	1	1	1
ACCTTCGAGTGTTCCT	ref_6112_new	24	39	41	19	34	19	28	27	38	19
GGCGCTATTGTGTCTT	ref_6112_new	62	106	92	64	99	80	129	79	75	65
AATTACCTGCTGGGTG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
ATTGAGTTAGGCTCCT	ref_6112_new	12	16	12	8	6	8	14	13	21	8
ACTTATTGAATAGGGA	ref_6112_new	24	30	24	25	26	17	38	34	30	22
TTCACCTCGCTGGGAA	ref_6112_new	13	14	9	10	10	6	11	9	19	12
TCTGTTATGTCCGCTT	ref_6112_new	1	9	4	8	7	5	13	7	7	4
ACCAGCATGGGCTTTG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TGGGTACGCCCGGGTT	ref_6112_new	12	17	8	11	17	7	12	11	16	8
AATTCGGAGCACTATC	ref_6112_new	0	0	0	0	0	0	0	0	0	0
CATGTTTCGTAATGTA	ref_6112_new	92	132	95	95	121	97	129	87	126	69
CCCTGACTAGGCGAAG	ref_6112_new	16	37	30	27	32	16	47	20	32	12
CATTCGGAGCACTATC	ref_6112_new	161	200	182	143	203	130	216	144	223	101
CTGTACAGGCTTGTGA	ref_6112_new	36	60	43	25	56	37	50	33	55	37
CATAATCCCATATGTG	ref_6112_new	36	44	31	34	45	19	33	28	51	41
AATCGATGCTTGTTTT	ref_6112_new	14	7	18	11	16	13	13	9	16	12
CCCCCCACACGTTTAC	ref_6112_new	19	24	16	21	16	11	15	23	19	7
GAGACAAGGTTTTCTG	ref_6112_new	42	75	49	38	62	40	64	30	94	44
ATTCCATACTGGCAAT	ref_6112_new	55	68	58	45	71	46	80	27	72	48
GTGACAACAGAGTTTA	ref_6112_new	5	4	5	8	1	8	10	3	11	3
GGTTTTACCATTAACG	alt_6112_new	8	15	9	6	19	4	15	7	9	9
CCCTTCCGCTCAACTT	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TGTTCTTTGTGCTGGG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TTTGGAAATAATGGGG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GGCAGTGCCACACCAG	ref_6112_new	26	30	21	21	26	26	25	22	28	17
TCCGACTATCGTTTTC	ref_6112_new	6	5	8	4	8	2	7	3	11	10
TTACACTTTGTCGTAT	ref_6112_new	13	17	18	16	18	12	18	5	21	14
ATCATGCCGGCATAGG	ref_6112_new	72	74	108	92	103	76	95	93	98	85
CACCCCAGGGTCGGCC	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GGTGTGCTGTAATGGG	ref_6112_new	18	12	12	12	21	14	16	15	13	10
CTGGAATCATTTCGAT	ref_6112_new	22	42	46	26	40	33	47	25	50	23
GAAAATTGACTATCCA	ref_6112_new	45	49	71	57	70	52	83	41	58	49
GAAATCGCGCGCCATT	ref_6112_new	58	62	95	58	86	58	78	60	108	70
CTACTCGGCTCAGTCA	ref_6112_new	82	155	121	105	164	98	165	116	157	87
AGGCCATTCCTCCGAG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTCCCCGTATG	ref_6112_new	11	20	19	8	18	12	25	13	16	10
AATTCAATCCTACCAC	ref_6112_new	9	16	8	4	4	9	7	11	8	6
CGTTTTCGCAGATGTC	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GCGTCGGCATAATGAA	ref_6112_new	1	0	1	1	1	2	2	1	3	0
GACGAGAATATTATCT	ref_6112_new	6	9	8	4	4	0	7	6	9	2
GGCACCTGGGGATATT	ref_6112_new	28	43	32	32	58	32	40	14	43	26
TGGCTGTGCATGAATT	ref_6112_new	45	60	66	46	64	48	61	51	77	50
GTACCTCAGCCGGCAC	ref_6112_new	14	32	22	18	42	13	52	18	39	14
TTCATTGGGGCTGGTC	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TGTCTAAGCCTATCCT	ref_6112_new	0	0	0	0	0	0	0	0	0	0
AGTTCTATGAATGTGC	ref_6112_new	9	8	7	1	11	3	6	5	2	2
CGTTGAATGGTTGTCC	ref_6112_new	18	23	16	15	38	15	33	9	31	13
TGAAGGAGTTTTTGGC	ref_6112_new	29	29	34	19	36	30	43	17	46	22
GAGCCACAGATTTCGA	ref_6112_new	10	14	6	9	17	6	12	11	11	5
CGGCTCAGCTTGCCCC	ref_6112_new	63	68	58	56	77	49	99	53	98	54
GTTCCCTGAACGTTCT	ref_6112_new	18	34	29	18	18	27	43	14	46	17
GCATTCATTTCTTTTC	ref_6112_new	28	38	49	38	34	42	39	34	42	30
TTTTGTGATGATGTCG	ref_6112_new	142	153	156	126	176	127	160	123	166	122
TGTATGGCAGGAAGCA	ref_6112_new	15	30	31	29	28	32	18	23	28	21
AGTGAATAGCGGTGGT	ref_6112_new	99	77	105	75	92	82	107	71	97	68
ATGCGTATTGAATCAG	ref_6112_new	60	71	64	48	75	53	82	51	87	44
TTCCTTTAGGCTTCGG	ref_6112_new	51	49	69	44	76	49	81	47	66	28
AACGGGTGGCCATTCA	ref_6112_new	29	61	37	32	52	31	60	36	42	44
AGTTTGCTGTCTAGCT	ref_6112_new	7	39	19	17	23	19	35	18	24	27
CTAGGTCGTGCTGGGT	ref_6112_new	70	55	81	62	88	56	84	48	88	68
TTTAAGAGTTAGCTGG	ref_6112_new	20	29	22	22	23	18	37	20	34	18
GAAGAGGTTCTCGACT	ref_6112_new	16	19	10	4	15	11	17	8	8	7
TTAGGCTCTTACGTAG	ref_6112_new	19	27	22	14	21	15	35	13	31	15
AAGTGCTTCTCACCTT	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TTCGAATAATGGTCGC	ref_6112_new	11	8	17	15	7	3	4	8	16	4
ACCCTCGGAAACGATA	ref_6112_new	18	14	9	7	16	15	13	7	17	10
CGCACTTGCCGTGTGT	ref_6112_new	52	81	89	73	89	61	73	41	104	65
ACGAATTAGATGAGCA	ref_6112_new	8	6	8	4	6	1	5	2	13	4
ATCGTGTTACTTGGGC	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TTGGGACGCTGCTCCA	ref_6112_new	6	9	12	11	11	10	16	8	16	6
GATGTTTGTCGTCTGA	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TGGTGGGTAGTATCTT	ref_6112_new	42	36	33	26	25	19	24	24	27	21
GAGGCTTAGGGCAGTG	ref_6112_new	18	32	17	27	25	17	38	16	26	15
ACCTATTCGTGTTATG	alt_6112_new	21	34	35	28	42	18	49	22	40	21
TAGGCTCCTGGGCCCA	ref_6112_new	15	11	7	5	13	9	11	4	11	11
CTGTACAATTAGGGCG	alt_6112_new	15	36	25	27	20	15	39	19	36	7
GTATTGGTTTCTCCAG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
TTTTGTGTTGCTTGTG	ref_6112_new	22	24	18	13	19	17	22	12	21	18
TAGCCTAGCATTACTT	ref_6112_new	0	1	2	2	1	0	1	0	2	0
GTCTGTTTGTTCTAGG	ref_6112_new	32	69	41	30	72	34	89	43	66	27
TTTAGGTTTGTTGAAC	ref_6112_new	0	0	0	0	0	0	0	0	0	0
CCTACTTCCATTATCA	ref_6112_new	44	58	37	42	46	37	47	27	57	30
GGCACCACTCCACCGT	ref_6112_new	5	14	5	4	10	6	9	0	9	5
TCCAGTAAAGGCGGAT	ref_6112_new	0	0	0	0	0	0	0	0	0	0
ATAGTTATGTTGGTTT	alt_6112_new	141	213	195	164	231	123	230	148	265	136
CGTAATCTGGACCGGT	ref_6112_new	7	13	20	11	19	12	14	10	17	10
TCTATGTGTTGTCGGT	ref_6112_new	11	18	11	12	16	6	16	9	21	8
TTCCCATATCCTCGGC	ref_6112_new	15	22	22	23	37	14	30	22	28	13
TTTCCCACTCTAATCA	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GCATTGAAATCTTTTG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
AGCTCTATATAATCTC	ref_6112_new	3	5	2	7	4	2	5	4	9	8
TTGTCGTTATAGACCT	ref_6112_new	22	36	35	26	34	23	18	20	33	19
GCCCGGCTAATTTTAT	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GACTAAGCAGTCGGAT	ref_6112_new	11	14	16	10	23	15	25	17	13	16
AGCGGAGGATCCTAGG	ref_6112_new	52	46	51	46	56	38	56	43	70	51
ATTCTCGCTACAGTCT	ref_6112_new	56	75	60	58	60	47	72	49	79	48
TCCGGTTGGGCCAACA	ref_6112_new	13	22	11	14	14	14	19	15	13	17
TGGGAGTTATAGTTTT	ref_6112_new	10	15	21	15	26	5	16	13	20	16
TGGCTACTTAGATCTA	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GCCCCGCGTACACGAA	ref_6112_new	8	9	10	2	8	7	10	3	14	5
GGACCGAACAGAGGGG	ref_6112_new	17	19	19	15	21	13	15	8	16	11
GATACTCATGTTTTGC	ref_6112_new	18	13	28	18	19	11	18	15	35	18
ACGAGTAATAGATAAC	ref_6112_new	0	2	0	0	1	0	2	1	0	0
GTTTTATCTGCATGTA	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GTCGCGGACTCCTATG	ref_6112_new	160	204	176	170	227	152	257	136	234	138
ATCGTGTTTCGACGGG	ref_6112_new	17	19	20	19	23	11	20	9	23	10
TCGTCTGTCTATTATG	ref_6112_new	19	20	14	13	20	13	15	7	26	19
TGGATAGTTGAGTTTC	ref_6112_new	13	16	14	11	21	9	17	15	18	9
CGCACCTGTAAAGCGC	ref_6112_new	59	96	95	78	95	66	109	64	108	65
TGGTTTTATTATCCAG	alt_6112_new	89	111	97	83	85	76	104	77	111	69
GGTCATGTCATCGCTC	ref_6112_new	17	28	29	19	36	24	39	27	32	33
AAGTACTGCACCTTTT	ref_6112_new	25	42	24	14	45	23	27	30	29	19
AGTGGAGCGCACGCAC	ref_6112_new	35	44	39	27	34	31	43	38	43	24
TTCTTCTCACTTTTCA	ref_6112_new	0	0	0	0	0	0	0	0	0	0
GGCTCAGGTCGTATGA	ref_6112_new	11	19	16	17	21	13	15	16	25	17
GGATGTTGATCTTGTT	ref_6112_new	37	40	40	39	43	41	42	25	28	44
TGGCCATTCCTCCGAG	ref_6112_new	187	179	218	173	216	157	214	136	192	163
TATCTTCGGTCCCCCG	ref_6112_new	0	0	0	0	0	0	0	0	0	0
AGACTCCGTTTATCCC	ref_6112_new	0	0	0	0	0	0	0	0	0	0
AGAACTTTCTTTCCTT	ref_6112_new	7	17	12	6	11	16	21	8	9	8
AAGGAGGTCCGTGTCA	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GGGCCCACCTAAACCA	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GTTGGGATTGGCTTCG	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GACGAATTTTGAGACT	ref_5967_new	25	44	26	25	27	37	31	20	43	30
GGATGTCCTAATACTT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GGTCGTGAGGCGTTTC	ref_5967_new	9	18	18	11	20	17	19	9	17	6
TAGACATTATGTTGAG	ref_5967_new	10	19	15	4	12	9	18	7	15	18
AGAAGCTTCGTGTCCT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GGTTCTTGTACCAGAT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TCGAATTGACACCACC	ref_5967_new	99	95	86	73	124	88	90	86	109	78
TTGGCTTTCAGCATAA	ref_5967_new	13	12	12	7	13	9	14	10	12	8
TGTTTTCTGCCCCCCT	ref_5967_new	21	21	28	17	17	18	20	24	28	19
CACATCCTTACCCGGT	ref_5967_new	35	33	28	17	32	21	38	22	27	27
CCTCCGTTTGGTCTCG	ref_5967_new	19	23	20	9	34	25	22	19	33	15
CTAGTCTTTTTTGAGT	ref_5967_new	26	33	21	11	36	14	22	16	24	17
GAGTTATGAGAAATTA	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TACGATTAGAACAGTT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GCTGATTAAAAGACGA	ref_5967_new	6	23	8	7	9	6	12	4	13	4
CAGCAGCTCCCAGGTC	ref_5967_new	21	20	30	11	15	24	23	16	20	13
GTTGCTCGCTATCTAT	ref_5967_new	17	30	31	17	22	19	20	28	28	25
ATCATCCCATGGCTAA	ref_5967_new	10	5	7	2	12	9	8	7	8	7
CCGTGGGCAATTACTG	ref_5967_new	26	50	48	30	74	32	63	39	60	26
CTCCTACTATCTAGGG	ref_5967_new	10	12	8	2	12	8	6	5	16	8
CTTGATTCATTCTTAG	ref_5967_new	37	43	45	40	36	36	52	41	63	32
GTCATCACGTCTTCCC	ref_5967_new	5	7	10	9	8	2	4	4	8	5
TAGTTGGTGTAGGTAA	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TAGAACCTTAGCGGTA	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TGATTTTCTGTTCAAC	ref_5967_new	2	5	5	7	8	3	13	9	8	3
GGTAAATGCGAAGCGA	ref_5967_new	242	265	264	194	252	246	281	190	262	228
TTGCGAGCGCTATATT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TTTCGATGGGTGATCC	ref_5967_new	0	0	0	0	0	0	0	0	0	0
AACCGTGGTTGTGTTA	ref_5967_new	26	46	33	33	49	17	43	24	38	17
TGTATCTTGTCCGTGG	ref_5967_new	43	49	44	32	35	36	34	34	35	40
TAATACTTCTATCCGT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TTCATGGTTATTTGGT	ref_5967_new	27	28	29	25	29	23	32	20	35	25
CACGGCGATCATCTGA	ref_5967_new	46	39	37	32	45	28	26	36	44	28
TACCGATTATTTGCAT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
ATTCGTTCGAGCACAA	ref_5967_new	5	2	6	3	2	5	2	3	8	3
CCGCCAAGTCACTAGC	ref_5967_new	1	18	5	5	18	6	18	4	17	13
CATTCGATCGATTAGC	ref_5967_new	17	27	32	25	24	30	15	24	34	19
AACATAGTTTTGCGTG	ref_5967_new	0	0	0	0	0	0	0	0	0	0
CACTACTCGCCTTGTG	ref_5967_new	2	38	3	6	35	3	35	6	22	5
TTCACTTACACGTCGC	ref_5967_new	54	55	44	21	38	35	36	41	52	40
ATACGGGCTTTTACTC	ref_5967_new	15	22	14	14	10	11	14	11	19	13
GGAAAATGCGAAGCGA	ref_5967_new	0	0	0	0	0	0	0	1	0	0
AAGGGTCCGTGTATCT	ref_5967_new	15	33	37	19	26	22	28	21	38	23
AATCGATTGTCATCTA	ref_5967_new	28	25	20	18	22	34	48	16	25	22
CAGTTCCAGTATCACT	ref_5967_new	11	26	27	16	40	23	30	19	24	12
AATGCGCTCAGAGGTT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
ATCGACCGATCCCTAG	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TACCGAGTCTAATAGC	ref_5967_new	0	0	0	0	0	0	0	0	0	0
ACTACATTTGACAACT	ref_5967_new	0	0	0	0	0	0	0	0	0	0
ACGTATCCGGGAGTCC	ref_5967_new	206	205	215	170	209	178	187	142	209	201
TGCATTGAGTTCCTTA	ref_5967_new	22	36	23	19	29	22	28	20	39	16
GGGACCCCTACAATAC	ref_5967_new	10	9	13	2	6	13	6	5	9	7
GGCTAACGGTCATGTC	ref_5967_new	48	155	40	49	178	35	145	51	154	49
GCTTTATCTTCATGCG	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TGTCTATTTCTTAGCC	ref_5967_new	11	19	12	9	9	10	19	16	16	18
ATAATATGGTGTCCGT	ref_5967_new	3	7	9	3	5	7	7	3	3	3
ATGAAATCCTGTCCGG	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GAGTATCGCTGATGTG	ref_5967_new	6	3	8	6	7	10	5	7	5	8
TACATCGCATACGCTC	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GGCGCGCCGCATTACG	ref_5967_new	10	8	9	4	8	10	11	6	10	5
AATTTTCGGCGTATCT	ref_5967_new	47	39	35	34	44	28	35	24	33	33
TGAGCATTGTCCCAAT	ref_5967_new	30	43	34	23	31	40	47	30	32	20
GTGACCGGTCGCCACC	ref_5967_new	97	85	95	68	79	80	88	66	84	67
TAACCGAAACCTTTCC	ref_5967_new	36	21	41	23	28	29	30	33	35	29
AACACGAACTCCTATA	ref_5967_new	3	11	9	4	6	9	10	10	13	11
ACCTTTCTATCATAAA	ref_5967_new	9	12	14	6	16	13	12	13	18	10
TTCATGCTAATCATGC	ref_5967_new	10	15	9	9	11	6	22	17	16	7
GGAAGGCCCGATATTA	ref_5967_new	11	18	15	10	12	12	12	12	8	10
ATTTTCCCAATGGTAT	ref_5967_new	5	7	5	9	10	8	10	8	13	9
CAATGTTCTAACGCTG	ref_5967_new	9	6	19	2	12	9	7	11	12	15
GGAATGATTATTAACA	ref_5967_new	5	4	5	4	3	6	1	3	2	1
GTGCCTATAGTAACAC	ref_5967_new	6	7	6	6	7	3	9	3	9	4
TTGGAATAACCATTAC	ref_5967_new	10	8	5	8	12	8	13	14	16	16
ATCCCGAAGCTATCCA	ref_5967_new	1	1	1	0	2	0	0	0	0	0
TCTGATTGCTTAAATA	ref_5967_new	8	8	9	5	16	6	9	5	16	4
TGCGGTTCTTTGTATT	ref_5967_new	22	11	10	12	7	9	26	14	4	12
TTCTGATGTTAACGCA	ref_5967_new	0	0	0	0	0	0	0	0	0	0
GCCGGCTTGACATGTC	ref_5967_new	0	0	0	1	0	0	1	3	0	0
AACATTGTATGTACAG	ref_5967_new	0	0	0	0	0	0	0	0	0	0
TCCGCCCTATGGCATC	ref_5967_new	12	16	21	8	16	9	19	8	23	11
TTCCGCCGGAATAGGT	ref_5967_new	40	51	39	35	41	38	65	40	52	49
CAAGAGCATTCTGTGC	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GGTACGCGGAACCTTA	ref_3351_reverse	2	2	4	3	2	3	1	2	2	0
CTCCCCTTGATGACTT	ref_3351_reverse	19	29	28	8	36	13	28	13	37	13
TTTTAGCTGTGCCCGG	ref_3351_reverse	93	71	118	125	91	106	76	101	86	119
GTATTCTTAGCGCAAA	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGCACGAGACACG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CCATGCGGGTCAGCCT	ref_3351_reverse	54	34	61	44	34	55	34	41	27	43
TTAACTGTATTTGTTA	ref_3351_reverse	153	107	175	118	108	154	110	111	102	119
GGACCAGGTGCGTAGG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGCCGCCGACTCT	ref_3351_reverse	13	9	21	12	14	15	17	6	15	5
CTTGCGGATCGCAGTG	ref_3351_reverse	5	6	6	11	7	8	7	11	8	6
GTGAGCATCAAGTTGC	ref_3351_reverse	25	15	39	16	11	30	18	17	24	18
TTGTTTGATTCGTTGG	ref_3351_reverse	30	11	22	27	17	17	13	29	29	22
GACGCTTCCGGTATTA	ref_3351_reverse	75	48	104	103	59	89	66	81	68	85
ATCGTCTGTAGCTGCA	ref_3351_reverse	10	11	15	14	16	9	18	9	20	13
ATGACTACTTATTAGA	ref_3351_reverse	120	102	134	93	87	98	101	102	88	103
CTGGAACTTATGGCCA	ref_3351_reverse	176	187	231	190	176	174	192	186	154	182
CTCTTTCGCGATGCTC	ref_3351_reverse	111	74	98	87	78	89	75	96	69	70
GGGCAGTCAATGGGTT	ref_3351_reverse	28	30	56	38	19	35	27	42	36	20
ATCCCTCGTTACGAGT	ref_3351_reverse	7	5	3	10	6	4	7	7	5	5
TCGTCTCAGTATGCTT	ref_3351_reverse	204	209	279	252	212	206	206	217	211	198
TTAGCCTCTGGTAACC	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTGTTGTGGAATT	ref_3351_reverse	0	2	3	2	0	2	1	4	1	2
ATGCCATAGCGATGCC	ref_3351_reverse	28	22	29	19	12	30	28	16	15	27
ATATCCATCCCAATCT	ref_3351_reverse	34	18	33	20	35	36	16	16	30	12
ATTTCATATTTAAAGT	ref_3351_reverse	9	7	7	6	8	9	10	3	4	7
CGTCCGGACTTGCTAC	ref_3351_reverse	6	8	7	9	6	8	8	7	6	4
GTTAGCATGAGTTCTG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTGATCAGCAAG	ref_3351_reverse	23	40	37	18	29	37	34	31	33	31
TTGTGTTAATGGAACG	ref_3351_reverse	5	2	2	7	5	10	4	9	5	3
CTGGGGTAAAGTTTTT	ref_3351_reverse	39	46	55	37	33	34	30	37	49	49
CATGAATAGCATTCCC	ref_3351_reverse	40	60	71	56	63	34	58	45	49	49
CCTTGCCTGTGTAAAC	ref_3351_reverse	24	43	36	24	33	30	41	35	36	24
TTCAAGCGAGAATTAT	ref_3351_reverse	35	22	31	24	14	21	33	16	21	21
GATCTTCAATGTTAGG	ref_3351_reverse	6	9	12	8	10	8	16	6	10	10
CACAGGAGCCATCGTA	ref_3351_reverse	1	15	9	8	25	12	16	9	21	7
AAGGTGATTTGGGTGT	ref_3351_reverse	35	41	46	39	28	50	47	48	29	30
CGACAGATTGTTCCGT	ref_3351_reverse	141	140	184	146	141	135	120	102	130	141
TTAGTAGCGTGTTGTG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CACAAACACCTCTAAT	ref_3351_reverse	72	84	135	119	71	103	82	88	96	91
AAAGCGTTAATCAAAT	ref_3351_reverse	163	107	193	176	171	160	148	147	132	135
GATGGAGAGATCTCCC	ref_3351_reverse	8	9	5	6	10	11	7	11	9	7
CTAGCGCTTTGGGCTT	ref_3351_reverse	34	36	44	38	32	38	36	31	39	35
GAGTCCATTTCGGAGA	ref_3351_reverse	67	56	74	57	38	45	57	57	43	55
CCTCTTGGGATTTGAT	ref_3351_reverse	101	85	123	96	98	100	95	98	86	94
TACCGTGGAATCGCCT	ref_3351_reverse	149	125	218	160	132	146	149	155	146	137
CAGATTGGCCTCGCCG	ref_3351_reverse	23	27	46	26	20	21	31	18	29	26
GTCCGTCCGTATTGCA	ref_3351_reverse	34	20	43	23	34	35	24	27	34	32
CCCTTTGGTAGTGATA	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAACTACCATCCC	ref_3351_reverse	6	5	7	8	12	19	19	14	11	9
GAACAACTTGTGGTCT	ref_3351_reverse	12	14	20	10	13	10	8	11	17	14
GAATGTCCAGAAAATT	ref_3351_reverse	36	29	62	43	37	50	35	41	26	45
CATTCAATCGTACCGG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GATATTCAGGAGTTAA	ref_3351_reverse	85	38	117	91	42	117	55	117	40	81
GTCACGGCCTCTTTTT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
AATAATTCGAATTCAC	ref_3351_reverse	70	91	91	98	66	85	76	65	77	84
AGGGGTGTAGCATCCG	ref_3351_reverse	34	23	41	28	20	27	22	26	28	34
GAAACGTTGTGGTAGT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCGGCAGCCCGCG	ref_3351_reverse	53	39	71	42	33	44	38	41	47	47
TCGCAACTTGACCATT	ref_3351_reverse	95	78	129	81	111	100	95	72	72	89
TACTTCACACGGTGCC	ref_3351_reverse	11	8	16	5	14	10	14	11	2	7
AAGTTCTAGCGTCGTT	ref_3351_reverse	15	10	12	10	11	8	15	12	10	13
TTGACTACGACCTCTC	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTGCCTGATCTTG	ref_3351_reverse	22	23	26	19	16	23	12	19	21	26
TTTCTCCGGCGGACAA	ref_3351_reverse	7	4	6	3	9	3	3	2	10	5
CTTCTTTGCTCTGTTC	ref_3351_reverse	51	37	64	46	48	34	40	54	49	45
AGTGTCTGCAGGGATG	ref_3351_reverse	41	32	35	33	25	34	49	21	43	30
AAAGTTATAGGCGACT	ref_3351_reverse	9	2	11	9	4	7	9	4	8	6
GTCCGCGTCCGTAGGT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CGCCGCGGTCTTTATT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTGAGCTGTTCTG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CTACGGTCACTTTTAA	ref_3351_reverse	12	20	33	28	18	16	17	16	16	15
CATCCTGCTAGTTATT	ref_3351_reverse	84	55	79	100	67	91	66	67	78	72
AACTTAGGGGTACGCA	ref_3351_reverse	112	70	101	103	75	85	69	99	76	99
GATTAGGTAGTGTAAT	ref_3351_reverse	58	43	79	61	41	47	59	62	79	67
TATCGAGAATTGTACT	ref_3351_reverse	38	30	44	34	30	39	40	32	43	45
ATCATGCTAACTCGGA	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCCGTTATTAATT	ref_3351_reverse	247	219	275	228	212	241	194	237	208	220
GTGCGGAGAGATCACT	ref_3351_reverse	132	120	155	130	91	125	130	94	144	105
CATATAAGTGCACGCT	ref_3351_reverse	69	57	84	62	53	57	59	72	65	43
TTGTTTTTTCTAGCAG	ref_3351_reverse	40	24	45	41	41	44	42	40	39	40
TCCTTACCCGGATGGT	ref_3351_reverse	11	18	19	17	22	11	11	15	17	21
GCCATCTTATTTGTAG	ref_3351_reverse	42	64	63	37	88	49	76	46	59	40
ATCATATGTCACGGTA	ref_3351_reverse	19	12	27	18	20	26	10	16	14	11
AAATCTTGTGTATCTT	ref_3351_reverse	4	4	3	6	2	4	1	3	0	2
GGGCGTGATCAGTAGA	ref_3351_reverse	26	16	22	12	11	23	10	23	19	10
GTATCGCGACGAGTCG	ref_3351_reverse	132	142	159	142	99	117	112	121	107	142
GCTCTACAGATATGTT	ref_3351_reverse	5	2	9	4	9	6	11	10	8	10
TAGTACGTGGCAGAGT	ref_3351_reverse	37	32	53	34	30	37	29	30	54	34
CCACTGCGCTTCATCA	ref_3351_reverse	10	18	19	18	16	17	22	19	17	14
ATCGCAGTATTGGGGT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTTAACTCCTTTTGCT	ref_3351_reverse	18	12	17	16	8	15	11	7	19	16
CTCATAATACGTAGAT	ref_3351_reverse	318	278	367	299	260	282	275	282	283	285
AGCCAATTACGCTTCC	ref_3351_reverse	51	74	67	55	80	58	76	41	80	50
TTGGTGTTCTGATATA	ref_3351_reverse	14	9	16	14	10	19	11	17	14	10
GCACGAGCCGCCGGGC	ref_3351_reverse	24	12	17	15	19	24	15	14	18	9
GCTTACAATCCGTCCT	ref_3351_reverse	41	39	44	32	43	28	34	26	40	38
GTTTGTTGCTGGTCAG	ref_3351_reverse	33	34	67	45	30	42	40	32	41	43
TGAGGCTCTATCCTGA	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTTTTCGCTGTGG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TGTATTAGTTCATAAT	ref_3351_reverse	32	31	42	15	21	29	29	26	31	22
TTTCAATTGGATCTTA	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CTTACATATGGTGAGC	ref_3351_reverse	102	92	105	86	94	102	91	75	101	104
AATCTGCAGATTGACT	ref_3351_reverse	68	54	83	77	60	65	53	90	77	66
ACTATGGCTGGCAGCC	ref_3351_reverse	94	47	98	84	60	79	61	81	70	97
AGTATCCGTTCGCCGT	ref_3351_reverse	421	335	546	458	418	393	373	395	373	418
CTTGCTGCTGTCAAAG	ref_3351_reverse	82	67	91	93	65	65	67	69	77	75
GCGTTTTATAGCTTAG	ref_3351_reverse	4	1	6	5	2	2	10	5	6	5
GCACAGTATCTGTTAC	ref_3351_reverse	128	93	124	105	94	107	97	111	110	115
GTTTTTATGCATCCAT	ref_3351_reverse	47	30	45	59	34	52	26	39	40	34
GTGGCCTAGGCAAGGT	ref_3351_reverse	21	33	45	37	28	27	46	27	37	29
TGTATATTAATTCTAC	ref_3351_reverse	34	25	34	35	27	17	29	26	17	27
CCCGTGGAATTTCCAG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTATGTATTTGTG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGCCCCGGGATCG	ref_3351_reverse	191	184	228	168	218	177	199	161	174	150
TTGGTACCCGCAGGGG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGCGTCTAGGTTA	ref_3351_reverse	56	53	44	68	59	53	59	61	56	47
GTGGATGGATTCTACA	ref_3351_reverse	25	18	21	30	17	14	12	20	30	19
CCCTTTCGAGGCTTGG	ref_3351_reverse	33	22	48	26	18	31	26	39	24	28
AATCATATTTGTTCCG	ref_3351_reverse	17	13	23	29	15	17	15	14	18	15
TCATGACTTATGGAGA	ref_3351_reverse	166	150	198	161	139	199	126	124	126	141
TTTTGTAACTGAAGAC	ref_3351_reverse	119	124	139	144	122	114	106	130	129	128
GATAGACTCCTGCCTG	ref_3351_reverse	10	13	20	15	9	10	5	9	10	14
TAACCGCGCCTTCGCC	ref_3351_reverse	12	10	6	14	6	5	6	6	6	0
TTCGTCGCAGCGCACG	ref_3351_reverse	21	12	32	27	19	18	20	30	32	17
TGACGGTCGTTATGTT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
AGCTAGAATAGGCCAT	ref_3351_reverse	38	35	41	55	53	46	34	43	43	44
ACTTTCTTCGTCCGCT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GGTATGTGATATTTGT	ref_3351_reverse	17	25	29	20	20	20	23	23	23	19
GCTTACGCTTATTGTT	ref_3351_reverse	92	75	110	93	67	73	90	72	75	70
CTTGGCGTCCGCGTAT	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTTTTTTTTAAGC	ref_3351_reverse	27	24	34	35	20	21	23	29	24	32
AGTGTTCGTGAATTTT	ref_3351_reverse	3	4	9	3	5	7	6	4	5	8
AGCTTTGTAATAATCG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCGTGAGGGTGTA	ref_3351_reverse	12	7	9	9	9	3	10	11	7	1
AAAAGACCTGAGGCAC	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
CGCTCGTTTTTACGGA	ref_3351_reverse	62	54	47	46	50	51	54	31	47	44
AAACCTTACCCAGGTA	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTAAATAGAATTT	ref_3351_reverse	90	75	97	80	84	75	84	85	97	66
CTGGGCACCCGCTTTG	ref_3351_reverse	32	28	39	39	26	28	31	34	37	24
GACCCTTAGTTTGTGT	ref_3351_reverse	21	30	30	29	30	26	28	31	30	22
TACTTCATATGTTCTC	ref_3351_reverse	1	4	1	2	4	1	5	0	4	1
TCCCCACTGGTCGCGC	ref_3351_reverse	21	14	37	25	23	31	27	32	15	23
ATTCCAGAAACTTCTG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGGAGTACCCTGA	ref_3351_reverse	88	96	111	80	72	83	84	82	108	89
TGTTTATCACACATGA	ref_3351_reverse	25	20	37	36	19	32	13	22	23	26
ATGTTTTTTCTGTCGG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TTTATATTCTCGCTCG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTATTGTTGGCTA	ref_3351_reverse	53	53	61	45	55	50	48	50	59	28
CGACGTTCAAGTTAGG	ref_3351_reverse	0	0	0	0	0	0	0	0	0	0
GGGAAGCTATCGAGAA	ref_3351_reverse	31	33	34	26	38	34	35	44	32	41
CTAAATCCGCCGTTTT	ref_3351_reverse	55	27	51	47	33	59	34	40	29	46
ACGGCCGTCTGAAGTG	ref_3351_reverse	33	35	22	35	32	34	41	28	39	21
AGCTTCATTTCGATTC	ref_3351_reverse	51	27	50	40	33	49	33	47	44	42
GCCGCAGTGCTGTTAG	ref_3351_reverse	41	35	40	49	25	35	32	34	51	24
GCTCTCGGTAGCCGTA	ref_3351_reverse	76	56	104	71	84	85	70	76	85	106
TAAAAGCCCTACACTC	ref_3351_reverse	190	180	249	201	189	188	190	170	221	160
TCTCATTGCAGTCTAT	ref_3351_reverse	24	20	36	28	11	31	30	19	21	25
CCTGTGTTAGATCCCC	ref_3781_upstream	7	9	9	10	10	8	7	8	14	14
TGCCGGCTGTGAAAAT	ref_3781_upstream	101	81	138	130	98	135	79	107	80	99
TACCTTCAAACCTCTG	ref_3781_upstream	5	5	9	6	4	3	8	5	4	10
GAGTTTTGTCAGATTA	ref_3781_upstream	29	27	36	29	34	26	27	30	32	39
CGATCTAACTCCGAGA	ref_3781_upstream	6	4	17	4	9	7	8	4	6	8
ATGCCGAGGGGGCTTA	ref_3781_upstream	9	19	9	8	20	8	16	14	26	3
TCGATATACATCCGGG	ref_3781_upstream	12	5	12	9	11	10	4	3	5	6
GCGCAGATTTTCGTGT	ref_3781_upstream	158	106	185	155	90	151	98	128	125	138
GTTCATCCATTGCAAG	ref_3781_upstream	75	67	95	78	70	69	52	85	57	74
TGTATAGCTTGAATAA	ref_3781_upstream	98	64	95	86	66	79	64	66	57	79
ATCAGAGTATGCCGGA	ref_3781_upstream	25	18	34	29	18	23	10	17	25	21
TGAGGTGCACCCTAAG	ref_3781_upstream	92	53	112	89	68	89	62	72	54	79
ATCCATCGGAACATAA	ref_3781_upstream	33	24	27	31	17	25	28	20	32	34
CTCCGACGTTGGCATC	ref_3781_upstream	3	4	0	0	1	4	2	4	1	3
GGTTGTTCGGAGGTGC	ref_3781_upstream	2	2	2	0	0	1	1	0	1	3
CAAGCGGTGACAGGGG	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATCATCCAAGTAGCTT	ref_3781_upstream	24	20	28	40	12	14	16	23	17	16
CGGCTAGCCCGTGCAC	ref_3781_upstream	12	26	16	15	37	8	36	15	32	10
AATGGTTCATCGTATG	ref_3781_upstream	42	35	41	55	33	34	35	31	36	39
GGTCGGCTTTGGTTAC	ref_3781_upstream	41	23	34	32	14	29	21	25	18	17
CTGCCCAGCTGTCTTA	ref_3781_upstream	13	19	21	22	21	19	18	15	16	26
AATTGGATATTATACT	ref_3781_upstream	17	11	20	7	10	13	4	9	10	7
TGGTGAGCCAATCTGG	ref_3781_upstream	92	82	134	69	66	89	104	69	79	74
TTATCTGACCTCTGTG	ref_3781_upstream	144	89	202	131	104	146	116	155	95	117
CCGAATTAAATATCGC	ref_3781_upstream	24	17	26	21	19	26	14	31	27	33
TACCCTCTTCCTTCCA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
TATTCTTACGATATGC	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
CTGCAGCCTCGTGCTT	ref_3781_upstream	2	2	7	6	5	4	6	5	3	5
CTCGAGAATGCGGGAG	ref_3781_upstream	44	34	51	51	32	33	40	40	42	33
TATCATGCTTTATGTT	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATCCAGTCTTTGTACA	ref_3781_upstream	65	52	66	82	42	50	42	70	56	43
CCGTAGGGCGCACGCA	ref_3781_upstream	129	87	152	102	153	97	99	113	103	121
GGGTGTCATGAGTAGA	ref_3781_upstream	17	9	18	24	10	26	20	19	19	20
TCTCCACTCTCGGTAC	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCTGCTGGGGTTT	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGTAAGTTGCGGT	ref_3781_upstream	1	4	2	2	1	2	4	3	1	5
TTATCCATTCTCTTCT	ref_3781_upstream	48	22	56	47	20	43	33	39	37	44
TAGAGGCGTTATTGCA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
TGAACTACTATTCTGC	ref_3781_upstream	37	23	38	33	20	31	27	38	18	41
CCGTCACCTCACTAGC	ref_3781_upstream	8	11	11	12	11	13	11	13	9	10
TTGCGTTTTGTGTGGA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGGCGCCGTCTAA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGAGAATGGAGTC	ref_3781_upstream	41	29	44	51	31	36	31	31	28	39
AAAGTCTACCTGCCGG	ref_3781_upstream	22	14	10	12	7	14	14	22	23	26
TCGGCACCATCAATCC	ref_3781_upstream	113	55	110	90	64	99	78	92	73	89
ACTTGTTACATACCGA	ref_3781_upstream	36	34	42	29	46	31	25	28	43	24
CCATTTCCAACCCTCA	ref_3781_upstream	40	50	80	72	77	59	72	73	63	51
GGGTGCTCTATGGCGA	ref_3781_upstream	12	10	13	10	5	10	7	7	8	7
CAAGTCAGTTGGCTGC	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
CAGATAATCCTTTGTA	ref_3781_upstream	4	4	5	2	6	6	6	2	9	5
GGTTTGTTAATACGTG	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTTCGTATACACC	ref_3781_upstream	165	135	213	182	137	158	117	155	158	146
TTCGGTTATGTTGATG	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCCAAAACTTTAT	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGGCCAGTTTGGA	ref_3781_upstream	66	60	73	71	52	65	75	68	77	57
ACTGTCCACCAAACTT	ref_3781_upstream	18	12	30	21	17	12	14	18	22	13
TTGTGCAGTGATCATG	ref_3781_upstream	6	10	6	3	10	8	6	3	4	3
GGTGGATTATTGGTCC	ref_3781_upstream	5	9	9	6	5	10	1	9	8	14
TATCGTATGGGGCGCT	ref_3781_upstream	36	14	30	17	6	31	28	21	23	19
ATTTTCATAGTCGTAA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTCATGGTAGCGC	ref_3781_upstream	9	8	16	14	11	15	16	24	6	17
TTATGTCGGGCCAGCC	ref_3781_upstream	28	9	26	35	8	21	15	29	15	28
CAACTGAAAAGTTCCC	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
CCATTTACTCAAAGTG	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCAATACCCTGGA	ref_3781_upstream	20	12	24	21	13	17	23	12	12	18
CAGCCTTATTGACCGA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
GCGTATTTGTGGCCGT	ref_3781_upstream	16	11	18	22	6	14	8	13	7	9
ATAGTCCCAATTTTGT	ref_3781_upstream	171	138	245	226	147	178	138	175	126	183
AGTTGTGGATCGGAAT	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTGTGCATGCCCC	ref_3781_upstream	10	23	16	12	36	10	31	14	22	12
TCACGTGCAGGTTCGC	ref_3781_upstream	1	0	1	0	0	3	0	0	0	1
ACAGGCCTAGTATAGG	ref_3781_upstream	6	3	4	6	4	4	4	9	5	3
AAAAAGTAATTGGGTT	ref_3781_upstream	31	47	44	38	19	30	42	40	25	36
GACTTGGCCTTGCATT	ref_3781_upstream	16	15	17	26	11	13	17	17	21	10
TGCGGGCAAAAGTTAA	ref_3781_upstream	100	63	83	90	64	63	65	73	72	60
GCCGTGTCTCGATGCG	ref_3781_upstream	51	43	66	63	45	60	50	45	44	58
CGACAGACCTGATCGA	ref_3781_upstream	98	64	104	124	67	76	72	98	83	116
ACCTTTTGGCTTTCCT	ref_3781_upstream	10	10	10	10	9	10	12	4	9	9
ATGCCTTACACGGTAG	ref_3781_upstream	10	3	9	10	9	3	7	8	6	6
AGTCGTTTCTATCGTC	ref_3781_upstream	147	118	207	167	100	151	140	155	108	123
CGATCTTCTCTTCCAT	ref_3781_upstream	34	29	51	53	18	31	20	44	18	34
GTCTAGCCTTTACGAA	ref_3781_upstream	24	16	26	26	24	19	23	26	18	25
ACAAATCCTGACATAG	ref_3781_upstream	1	0	0	0	0	0	0	0	0	0
GATGGCCCCATCTGTG	ref_3781_upstream	45	35	61	60	42	45	33	55	51	46
TGAGCCGGACTTTTAA	ref_3781_upstream	41	24	33	35	20	34	35	33	32	27
CACTTGCTACCTGGCT	ref_3781_upstream	9	10	12	13	10	11	5	12	6	10
ATAGGCAATTCTATCG	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGGACCGATCTTA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTCCGCAAGCATC	ref_3781_upstream	13	14	15	20	13	8	7	10	9	4
GTTTCCTTGGATTGTC	ref_3781_upstream	10	11	25	10	17	15	6	21	9	14
GCTTCATTCCCATATG	ref_3781_upstream	22	16	25	25	15	28	17	29	14	17
GCTCGCTGGAATCGGC	ref_3781_upstream	14	2	11	12	7	11	5	8	10	4
CACGGACTGGGTAGTT	ref_3781_upstream	8	18	11	14	15	17	11	24	14	16
CTGTTGGTCTTCGCGT	ref_3781_upstream	205	151	238	188	207	186	206	225	211	189
TGCGACTCTAAACACT	ref_3781_upstream	38	26	45	37	12	29	31	26	27	28
TCTACGGTTGTTCGAA	ref_3781_upstream	20	12	23	31	22	16	27	36	16	18
CTATATCGATGAGCGA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGGGCATTGCTGT	ref_3781_upstream	16	10	16	18	13	12	8	22	8	17
TGCTTATCTATCGGAC	ref_3781_upstream	74	82	105	65	79	48	77	66	71	71
TATGCAAATACGGTGT	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
GCAACTTGTTTTGACT	ref_3781_upstream	17	18	28	25	13	31	22	25	19	19
GCTCAGCCGTCGCCTG	ref_3781_upstream	25	25	39	30	33	20	29	23	28	20
ACTGTAGGTCAATAGT	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
CATGATTACACGCAGA	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
ATAAGGAGATCGTGCC	ref_3781_upstream	20	20	29	29	22	26	31	26	28	27
TTGCAGGTGGTTTCTC	ref_3781_upstream	0	0	0	0	0	0	0	0	0	0
TTTATTCACTTCTACC	ref_3781_upstream	12	7	11	10	7	11	6	13	3	10
TCTCCTGAAGGGCAAT	alt_1612_RC	18	32	18	16	47	14	47	14	31	19
TCGCGCGTCGCAACCC	alt_1612_RC	5	4	2	5	4	4	13	1	8	4
TTGGCACATCCGGGCA	alt_1612_RC	19	23	25	20	24	21	32	14	25	15
TCTGCACTTCTATGCC	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
GAGCTTCGTTCCGATG	alt_1612_RC	12	33	24	14	34	8	19	15	26	15
TTCGTTCGAACTCGCT	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
AGTGAATAAAAATAAA	ref_1612_RC	51	81	69	72	75	38	89	57	88	43
CTGCTAATCAGGACGG	alt_1612_RC	28	41	25	31	36	29	46	26	41	18
CATTTTTATTCCTTCG	alt_1612_RC	4	6	7	3	13	9	8	3	5	7
GGGCCTGGCCTAAACC	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
GCGTTTTCCCGTTTCG	alt_1612_RC	11	22	13	8	15	9	24	9	25	7
CACTTCTGCTTTTTCC	alt_1612_RC	15	17	14	8	18	13	27	11	18	17
TTGTTAGTAACTACTA	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
TGCTTGTTGGTCTTGG	alt_1612_RC	1	9	16	7	7	4	10	7	9	9
CTTCTATGTCTCCAAA	alt_1612_RC	39	101	68	52	107	48	70	47	104	32
AACACTCTCCTCAGGT	alt_1612_RC	3	20	6	2	13	7	31	1	24	5
CTTTATTCCATAATTT	alt_1612_RC	6	26	10	10	21	14	23	9	30	11
CCAGAGTTGGGATGAT	alt_1612_RC	158	362	151	120	349	134	395	131	386	122
ACAAATCTTACCTGTA	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTCTTAACTCAA	alt_1612_RC	9	4	3	3	5	4	2	5	8	3
GTTTATTCGTTGGATC	alt_1612_RC	23	24	20	11	37	19	40	15	35	13
TGGAACTGTGAAATCA	alt_1612_RC	2	18	11	6	8	2	12	1	15	4
AGATTACCTGGATAAG	alt_1612_RC	5	31	4	12	19	11	10	10	24	7
TTCGCCCTCCGGTTCC	alt_1612_RC	21	38	26	10	37	18	42	19	51	16
GGATGGGGTTCGTATT	alt_1612_RC	18	28	13	13	26	12	30	19	34	13
ACACGTTTCGTGGTTT	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
CTGACATCCCGAGGAT	alt_1612_RC	7	11	10	9	10	6	13	8	18	2
AGCGCGCACATCTAGC	alt_1612_RC	0	3	5	1	2	3	3	0	2	0
CTTGCACTGTAAAGTC	alt_1612_RC	3	13	10	9	8	3	15	7	14	5
TTTAAAATGTGGGAGC	alt_1612_RC	31	61	49	35	71	39	73	34	65	25
CGGTTGGAATCGTTGG	alt_1612_RC	24	28	16	15	31	13	30	11	32	13
CACGTAGAGCCTCGAA	alt_1612_RC	8	11	10	9	10	4	18	5	11	4
CGTACCTAAAGCATAT	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
TCAACCGAAATGTCTT	alt_1612_RC	38	43	30	28	53	17	57	23	70	31
TTTCATTGATCTATAA	alt_1612_RC	16	40	23	22	35	17	45	14	52	23
GTGGATTTCTTATCTC	alt_1612_RC	1	15	8	4	7	7	12	5	6	5
CGGGCCACTCTTTTTA	alt_1612_RC	13	22	8	7	33	10	24	12	22	18
CGAATCGGGAGGCCAT	alt_1612_RC	17	28	26	14	37	20	44	15	39	14
ACATAACTCTGAAAAA	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGGACGGGATTT	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
GGGCGATATCTCGCAC	alt_1612_RC	25	42	26	35	50	24	52	36	56	12
CGTCACTGGACGATCT	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
GGGTAAATGTTGAAGA	alt_1612_RC	21	34	23	28	51	23	38	28	35	26
CTATTCATCTGTGTAG	alt_1612_RC	17	41	16	21	54	29	65	18	54	16
GTATCGGCCATTACGT	alt_1612_RC	13	14	6	9	20	4	17	9	33	5
GCTATTGTTACAGTAC	alt_1612_RC	13	26	12	16	20	8	20	12	34	14
TTGGCCACTGGTTGGG	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
CCAGAGTTGGGATGAA	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
CTACTTGAATACCCTG	alt_1612_RC	4	2	3	1	4	3	2	2	1	2
CCTCCCTTGCACGTAC	alt_1612_RC	29	53	35	30	43	27	49	32	60	29
TGCATGCACTTCTTTG	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
ACGCGCGCCTTCACTA	alt_1612_RC	23	26	19	22	30	19	39	14	51	19
CGCGGGTTACTCTTGT	alt_1612_RC	18	25	12	11	21	14	31	11	24	8
TTCGACCTTTTTCAAC	alt_1612_RC	15	12	8	7	14	10	11	4	23	9
AGTGATGCTCCCGATC	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
GGGGACCCTTTCGCAG	alt_1612_RC	2	6	2	5	9	7	14	6	5	5
CCAGACGGTACTACGT	alt_1612_RC	40	132	50	57	140	42	130	49	142	43
GCAAATTTAAATTCCG	alt_1612_RC	27	46	25	21	47	22	44	17	47	14
TCGTAATACCAAGGCG	alt_1612_RC	16	34	25	24	31	19	22	17	28	15
TTTTGATGAGGGGGTG	alt_1612_RC	29	45	29	19	57	21	48	23	41	24
GCGCCCGTATACTGGG	alt_1612_RC	27	31	35	18	49	23	47	29	61	19
GCATTTGGTCTATGGA	alt_1612_RC	0	0	0	0	0	0	0	0	0	0
CTCATTTGATGGAGTC	alt_1612_RC	31	55	37	33	75	34	86	29	83	28
TTCAGTGACATCTCCG	ref_5648_new	50	37	55	47	61	41	59	44	66	39
GCGTATAGGTTTGGCT	ref_5648_new	39	34	47	47	38	43	44	40	46	28
TTCTTTTGCTGCATTA	ref_5648_new	42	42	39	50	48	39	52	52	68	51
GTGGTTGCGGGTTTGG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TCACCTGGTCCGTGGC	ref_5648_new	5	19	4	9	20	6	21	5	18	10
TAAACTCGATTGGCGC	ref_5648_new	14	10	19	15	11	9	12	23	18	6
TTTGATCACTTAGGTA	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GGGGGACCTTGAATGT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TCCAGATGTCAGTAAC	ref_5648_new	89	106	125	81	143	92	103	94	130	92
TTCGTTTGCCTGGGTC	ref_5648_new	66	64	52	45	66	42	72	42	60	50
GGCGCCGTTAGCGGAG	ref_5648_new	26	30	49	40	27	27	31	33	30	29
TCATACGACTTGCTCG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GGGGGGACCTTGAATG	ref_5648_new	67	66	75	45	76	48	88	63	81	52
CTCTTCCTTCCGGTGG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
AGTACTTTGTGAGTCC	ref_5648_new	33	43	39	22	40	34	34	27	44	28
CTAAGGGCGGACCATG	ref_5648_new	53	47	49	40	46	30	48	31	36	36
TCTTCACTAGACGGGC	ref_5648_new	8	20	17	8	13	7	10	6	15	11
AAACGGCGGTTGAGAG	ref_5648_new	57	54	54	51	47	48	54	46	50	36
AGGTGATGCGCTCTAT	ref_5648_new	129	168	147	121	176	102	179	106	176	121
AACCGGCTATGCATTA	ref_5648_new	7	9	7	2	14	3	19	4	14	6
TCTTGCAGCTTACAAG	ref_5648_new	4	7	4	5	1	5	6	5	7	3
ATGGAGGCTCGTTTTG	ref_5648_new	69	104	81	70	70	73	66	60	73	78
CTTAAGCGTGTTGACC	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TTCGAGACGTACTGTA	ref_5648_new	41	64	63	45	72	44	57	35	71	42
GTTTTAAACGGCGGCC	ref_5648_new	39	63	55	64	72	53	72	52	62	49
TTTGCTTAGACCGCCC	alt_5648_new	22	23	21	28	30	18	24	22	30	21
ATCTGGTGTCAACAAA	ref_5648_new	83	89	109	67	80	63	83	60	103	44
GTGCTACTGAAGCTTC	ref_5648_new	2	0	2	1	1	1	1	0	5	0
TAACGACCCTCTAAGG	ref_5648_new	47	80	72	70	78	48	91	56	66	56
CAGTTTTATGCTCCTT	ref_5648_new	29	44	37	32	37	35	35	23	43	27
CGCCTCAAGCCCTCCG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GGCGCCGTTAGACCGT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
CTCGTTTAAGGGTTTG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
AATTTCTCAAGGGTAG	ref_5648_new	59	109	89	75	89	67	94	62	101	63
GGTCTCCCTCATCTGT	ref_5648_new	9	19	14	5	15	4	22	13	17	6
TATGTGCCTGTATCAT	ref_5648_new	5	8	3	2	5	4	1	5	6	2
CCCGGCCATCCATTGG	ref_5648_new	50	64	50	47	70	25	65	34	92	44
TATGCTTTTGCAGGGA	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TGAGTACCTAGCGCAC	ref_5648_new	8	13	4	10	6	8	9	3	8	4
GAACTGTGTTAGTCAC	ref_5648_new	14	24	20	9	22	17	25	18	32	13
GTTCGTCCATAATTTT	ref_5648_new	7	13	12	8	23	15	21	14	16	14
TCCCAAATCACTTCGG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TAAGCTAGAGCCCGAC	ref_5648_new	57	74	77	79	80	52	59	64	71	56
AGCTTGGGTGTGGTCC	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GTCCTTCGCAACTGGC	ref_5648_new	13	55	14	19	46	13	41	10	49	18
GAGTACCTGACGCCAG	ref_5648_new	121	123	145	128	149	103	138	110	144	106
TAAACTTAGTCTCTTA	ref_5648_new	14	21	20	17	30	14	17	14	27	17
CGGCGTGTCCACCCCT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TCAAAGGTTGAACTGC	ref_5648_new	14	11	13	8	14	14	16	11	15	14
TTAGAGTACCACATCT	ref_5648_new	37	43	47	50	59	21	43	34	57	33
CGAAAACAGACTTTGC	ref_5648_new	4	10	6	5	7	5	10	4	9	3
GAACACCATTAACGCC	ref_5648_new	13	30	20	30	29	17	27	22	30	13
CATCCCTAGTACCTTT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
AAAGTCTACCATAGCG	ref_5648_new	31	28	33	16	33	14	31	22	27	21
TCCACCCCCTCTCGGG	ref_5648_new	37	38	44	34	28	33	29	21	63	20
ATCTTTATATTGCACT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
CCTCGCCAACAGGGAG	ref_5648_new	25	17	21	18	20	23	17	14	31	15
ATTAACAAGGGCTTAG	ref_5648_new	47	43	51	36	45	40	47	39	43	38
CGCGAGAGGATATAAA	ref_5648_new	74	111	94	78	82	76	109	93	92	77
GTTGCGGGCTCCAGCA	ref_5648_new	1	0	0	3	0	0	1	2	1	0
GGTCTAACAGCTTAAT	ref_5648_new	16	4	7	14	8	10	4	12	5	8
GGAATTCAATTTGTAA	ref_5648_new	7	1	4	8	3	4	6	2	4	3
ATAATAGAGTAGCCAA	ref_5648_new	1	1	1	1	0	0	2	0	1	0
CCGCAAGACCATAAAG	ref_5648_new	13	21	13	11	20	13	21	13	14	11
CCGTCGAGGTTGCAGG	ref_5648_new	17	47	26	26	32	19	48	9	31	19
AGATTATGCCCAGGCA	ref_5648_new	0	0	0	0	0	0	0	0	0	0
ATTACGATCTCGTTGT	ref_5648_new	25	13	17	33	27	23	27	23	27	22
TGGACATTGGCAAGAG	ref_5648_new	30	41	41	35	52	29	46	23	35	39
TTGTAATGAACTGACA	ref_5648_new	35	53	58	35	59	34	55	29	56	37
TAGGCTTGGTTTTTTG	ref_5648_new	56	73	69	45	83	52	80	42	94	56
TGTATTGCGCATGAAT	ref_5648_new	5	6	10	4	3	8	4	4	10	8
CTCTAGAAAGTTGTGT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GCCTGTAGGCTCGCGT	alt_5648_new	83	92	93	94	101	64	116	79	112	71
ACAATTACCTGGTTAC	ref_5648_new	21	34	34	28	35	27	26	25	28	21
TACGTCTTCTGGGCTT	ref_5648_new	2	2	3	5	7	3	5	1	3	1
TGGTATCCATTGGCAG	ref_5648_new	8	6	10	4	8	4	9	8	10	5
GTTTCTAAATTTATGT	ref_5648_new	116	126	177	149	129	86	201	125	184	92
GTGTACGTACACGCCC	ref_5648_new	5	21	4	4	18	4	20	5	16	4
AATCGTGGTTACCTAT	ref_5648_new	20	28	36	37	34	21	34	36	30	26
AGGCACAGTTGTCCCT	ref_5648_new	1	4	0	2	1	4	1	3	6	4
TTATTGCTGCGTGGGT	ref_5648_new	11	15	5	13	7	9	7	11	16	6
GTTCAGGTGCGGCTTG	alt_5648_new	166	201	193	161	217	161	235	157	226	143
CTGAGCTCGAGTAGGG	ref_5648_new	118	195	182	181	174	147	167	142	186	119
CGTGAGTAACTAGGAT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GGCGTTAACAGGGTTG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TCCTTCAATAAGATGG	ref_5648_new	30	28	60	35	24	30	44	44	42	27
AGGTACGCGCCGTCAT	ref_5648_new	155	198	159	123	164	127	140	115	192	139
ACTCATGACCCCACTT	ref_5648_new	31	19	30	23	28	31	25	29	26	31
CCACGTCAGCTGCGCG	ref_5648_new	4	10	10	1	17	2	20	2	16	2
CGGTATCATAATCTAC	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TCCTGATTCGGTATAG	ref_5648_new	36	47	58	43	57	50	65	35	53	26
AATTCTGCTCTACTCG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GTTTTACCTTACGTAC	ref_5648_new	10	9	11	4	10	14	7	15	9	5
TATTTTTTACGACTTG	ref_5648_new	6	4	6	5	6	4	14	1	7	2
GAAGTGACGCCATAGG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TTCTAATGCCGTTTTA	ref_5648_new	24	26	18	19	24	14	37	18	37	14
TCGTTTCACGCCCAGG	ref_5648_new	26	23	40	28	28	29	36	23	34	35
TTGGACTGATTAATTT	ref_5648_new	10	19	12	11	11	7	16	10	16	8
GTGCGGGTAGTGGGTT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TTTTGACAAGGTGTTA	ref_5648_new	124	194	153	160	172	144	166	100	195	137
CCCAGTCATGTTTTGG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TCGCCGACTTTGATTG	ref_5648_new	9	15	6	3	11	9	5	2	14	5
CTCCTGGACGGTAAGC	ref_5648_new	5	8	5	6	4	3	3	5	12	2
CTTATTAGATACTGTA	ref_5648_new	59	53	53	51	80	43	62	34	57	53
GTCTGTCCTCCGCTCT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
CTATCTCTTATTACAT	ref_5648_new	10	7	7	6	9	2	11	2	14	9
GGTCTTATCGATTGGC	ref_5648_new	33	21	31	22	26	26	25	22	28	23
CGTTCCCAGCGTGTTT	ref_5648_new	74	99	94	63	80	54	103	44	84	59
GCTGATGCCATTAGTT	ref_5648_new	6	8	10	6	4	5	3	4	5	6
ATGATATTATCTAATG	ref_5648_new	18	22	23	22	23	18	20	21	19	20
TTCCGCCCCATTTGTG	ref_5648_new	19	22	21	16	9	16	23	4	19	16
AGCTTGTGCGCTTGAG	ref_5648_new	2	3	4	3	1	0	2	1	2	2
GATAAGGACGACAGCA	ref_5648_new	55	39	67	48	50	70	57	59	59	47
TTATGGCTACTTAATA	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TTGATTCTCTCACCTA	ref_5648_new	0	0	0	0	0	0	0	0	0	0
CATGGAACTCTCCTTC	ref_5648_new	9	7	6	5	9	1	7	4	11	5
ATGCGCATGGTTTCCA	ref_5648_new	27	36	32	25	28	26	31	21	32	22
GGCTACGTCATCTACG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
ATGCAGGTATCCCGGG	ref_5648_new	18	17	16	8	14	11	16	13	14	10
GCACATCTCGTGGAAT	ref_5648_new	6	13	5	10	10	6	14	9	6	6
CCGTGGGAATTTCGGG	ref_5648_new	28	26	33	39	27	32	37	33	19	27
ATCACTGCTGGTCAGG	ref_5648_new	66	71	73	51	62	51	54	46	67	47
GTGTGCCCCATACTAC	ref_5648_new	21	20	32	25	34	16	22	23	35	19
TCGTGGACCGCGCCCT	alt_5648_new	26	23	28	27	35	22	43	20	36	30
TTACGCTTGTTTGGTT	ref_5648_new	15	38	13	16	32	9	46	12	40	6
GATTCTTGAGTGTTCC	ref_5648_new	9	8	3	9	16	7	7	8	7	8
CCGACTTTTCATGTTT	ref_5648_new	7	19	14	9	10	15	2	10	13	12
GCTGGAGGTCTAAGTT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
CAGCTGCGTCACCTTG	ref_5648_new	25	29	18	22	34	35	34	29	34	27
CGTCACCTGCTCTCGT	ref_5648_new	39	62	42	31	60	45	57	33	69	43
TATCACGACCCGGCCG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TGCCGACTCGTACCAG	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TTCTTAGGTTTGGCCG	ref_5648_new	32	36	31	44	35	27	47	26	29	26
CCAAGGGTCCTTGAGT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
GCTCAGGTGGGCCATG	ref_5648_new	25	35	32	25	24	26	47	26	43	30
CTGTGCGGGCGTGAGT	ref_5648_new	68	65	73	51	63	51	67	52	73	60
TTTGAATTCGTCGTTA	ref_5648_new	0	0	0	0	0	0	0	0	0	0
ATTAGGTTCAACAATT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
TCTTCCACCGCAAAGT	ref_5648_new	0	0	0	0	0	0	0	0	0	0
CATCGTGCCACTTGGA	ref_5648_new	35	40	50	33	43	29	53	38	49	38
CCGCTCTAGAGGCTCG	ref_5648_new	4	4	1	0	4	2	4	1	5	1
TGTTTGCGCCCGGAAC	ref_2112_reverse	79	75	77	82	77	67	93	71	92	71
TGCTTTCATCTGACCA	ref_2112_reverse	21	12	30	19	16	12	21	15	26	7
AGAGTCTGCGATAGCG	ref_2112_reverse	83	87	122	101	108	87	106	81	82	91
TATTACGCCTCTAAGG	ref_2112_reverse	46	43	52	50	57	50	56	53	38	45
TAAGCAGTCGTCTTAC	ref_2112_reverse	16	12	19	19	15	15	14	11	13	17
TGTGCCATTAAGTATC	ref_2112_reverse	78	66	93	86	74	75	87	79	100	66
TTGTCCTTTTGCGTCC	ref_2112_reverse	29	48	61	50	51	33	32	49	49	42
TAAAAGCGGCGCTTAT	ref_2112_reverse	24	16	21	11	20	13	15	12	13	20
CTCGATTTATCACCGA	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
AACCCTGTCCTCGATA	ref_2112_reverse	48	57	47	50	56	51	66	68	58	36
CCAGAAACTGTCTGGG	ref_2112_reverse	39	35	46	36	25	43	31	25	44	30
CAGGGCTCGCATGAAA	ref_2112_reverse	30	33	36	40	35	31	28	33	35	37
TTCGGCTAAGCTTTTC	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
CAGAATCGTGTGAATG	ref_2112_reverse	6	7	11	9	18	12	10	5	7	8
TCGCTCCATCCTAGTG	ref_2112_reverse	28	23	27	36	37	13	19	16	29	13
TTATGTCTACTTTGAG	ref_2112_reverse	82	65	103	71	76	85	53	79	66	70
TTGCCGTCAGTACTTT	ref_2112_reverse	12	23	12	17	22	9	10	11	24	7
ATTCGCCACTCATTAA	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAGCGCCATATAT	ref_2112_reverse	23	11	24	13	19	16	31	13	16	20
TCGAGGATGCTACGGA	ref_2112_reverse	18	16	22	19	27	18	15	22	11	8
TCTTTTACTATACTGC	ref_2112_reverse	38	39	59	38	36	35	39	33	35	42
GTTTCGACCCGGTCAT	alt_2112_reverse	43	28	59	46	29	24	35	21	38	41
TGCCGTCTGATCGTCC	ref_2112_reverse	44	49	61	62	55	38	56	41	62	68
TGTACATGATCATAAC	ref_2112_reverse	25	32	28	42	23	22	31	29	35	40
CGACGGTCTTCGCAGC	ref_2112_reverse	49	110	49	60	145	40	123	42	142	34
AGCGCTCTTTGGAGCT	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
GACGCGCTAGCGCCGA	ref_2112_reverse	37	48	68	46	53	55	30	36	41	30
TTTATTACACCATGTT	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
CTACCAATTATTGGGT	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
CAACTTCAATCGAATA	ref_2112_reverse	36	21	49	34	47	18	43	31	36	34
GAAGCATTGGATACAA	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTCATGTCTCTTT	ref_2112_reverse	141	142	187	173	134	119	147	158	158	170
TTTGAGGAGCCCGGGC	ref_2112_reverse	41	25	37	38	31	33	34	33	37	44
TGTTGGGGCGCATTTT	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
TCAGATTGGCAGGCTT	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
TAAAGGCCCCTTTGGT	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
TGAAAACTCTCGTGCT	ref_2112_reverse	0	0	0	0	0	0	0	0	0	0
TTGATGGTCTGGTCGC	ref_2112_reverse	147	133	211	160	126	163	130	161	150	156
CCCGTGGACGGTCAGA	ref_2112_reverse	115	123	169	171	133	128	118	120	145	122
TCATTCTGGTTCAGCG	ref_2112_reverse	32	19	34	33	24	21	17	16	20	19
ACTCCACCGCCTCCTC	ref_2112_reverse	33	266	28	48	276	29	283	30	322	24
TCGTAGCGTTTGTTCA	ref_2112_reverse	201	215	224	220	218	183	216	222	220	215
TCCCCTCTTGATCTTC	ref_2112_reverse	176	150	208	169	183	152	155	200	163	147
CTAAGAGGATGTCAAT	ref_2112_reverse	37	47	53	55	68	45	45	40	54	37
GATTTCTGGCTCAGTC	ref_2112_reverse	144	141	193	154	104	137	126	146	128	122
GTTATCTCTCCATACG	ref_4446_RC	77	49	65	74	52	42	47	69	63	52
AAGCGTTGTAAAGTTC	ref_4446_RC	21	27	39	33	37	19	27	26	30	27
CATTTTGACTGCTGAT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GCTTTTTGCTCCCTTT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ATTGTCGGTTTTTCGT	ref_4446_RC	45	60	49	40	32	44	41	44	42	40
GTTTCTGAAAGCGCAT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ATCGAGTATTGTCCGC	ref_4446_RC	44	55	62	53	43	49	44	40	53	48
AGCATCTAGAGCAGCT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TTCTCATTTTGGTTGT	ref_4446_RC	28	32	35	25	28	12	22	21	22	19
AGCCCTTACTCGCGAG	ref_4446_RC	4	7	3	5	6	1	4	3	12	2
TAAGGGGGGGCGCTTC	ref_4446_RC	16	17	8	12	20	7	12	15	11	20
GTGTCAATTTCCTTAC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TAACCGGTTCGTAACT	ref_4446_RC	54	80	68	57	56	54	93	49	89	37
AAGCTTGGCTTGTACA	alt_4446_RC	179	172	210	191	152	172	203	159	228	174
TGCGTTTATGTGAACT	ref_4446_RC	26	43	46	37	44	32	35	31	33	22
AACGGTGGTTCTATCT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGCTCCATGTCC	ref_4446_RC	9	8	8	12	9	12	13	8	12	7
TTGGGTTTTCGTTCTT	ref_4446_RC	46	32	48	56	48	49	52	43	53	32
GTCTTATGGATGTTCT	ref_4446_RC	62	78	97	85	75	60	80	76	73	92
ACCTGCAGCACTGGCG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TCCGCTTTGATCAAGA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GTAAAAGTTAATCGGG	ref_4446_RC	99	83	95	86	92	113	90	81	111	74
TTTATTGGGGTAGAGG	ref_4446_RC	23	25	29	13	16	19	12	18	32	12
TCTGCACGTGTATCTG	ref_4446_RC	38	36	42	47	48	36	50	52	46	41
GTATCTGAGGGCAGCT	ref_4446_RC	16	5	9	4	17	6	10	6	11	11
CTTAGCCTAGGCGTCC	ref_4446_RC	15	25	18	20	23	26	30	15	21	13
CTGCGTTATAACTTCT	ref_4446_RC	29	29	43	30	40	31	38	32	30	22
GGTTGGGAAGCAGGAT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TGCATGGCTTTAACCG	ref_4446_RC	38	35	44	40	32	31	32	25	47	32
CACGGGGTTGAGGTGA	alt_4446_RC	22	28	14	27	25	18	23	19	30	20
AGCGTCGTAGCGTAGA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
CTACACACCATGGCTT	ref_4446_RC	28	20	30	22	15	26	25	19	20	19
GCTAATTAAGTGGTTG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GAGCCTTTCGTTAAGC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTAGTCTACATG	alt_4446_RC	15	23	18	13	23	17	26	14	21	17
GCTCGGTCTATGGGCT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TCTTGCCCAGTTAGAC	ref_4446_RC	62	61	81	62	81	49	95	63	74	54
GGCCTAGACTCAAATT	ref_4446_RC	9	32	35	14	27	12	38	21	20	7
GCTCGCTAAGGTTATG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
CTGTGATTTCGCGCAG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ACTTACTGTCCCAATA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ATGGACGCCCCCGTAG	ref_4446_RC	111	97	126	103	120	104	83	110	112	76
CTTTTCTCGGAAGGCT	alt_4446_RC	149	120	206	147	135	144	136	158	122	144
AGGGCCTGCGCACCAT	ref_4446_RC	209	172	293	218	183	211	222	216	226	182
CCTAAGTCGCTTTATC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TTAGCCTGCCGCACAG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GTATTAAGCCGTATAT	ref_4446_RC	21	15	25	21	11	28	19	25	18	13
GTCCCTTTGAGCGATT	ref_4446_RC	9	9	6	8	6	3	9	6	8	7
CGACCAATGCCACTCC	ref_4446_RC	17	34	21	22	45	17	45	13	50	11
CGCCTAATATGACTTT	ref_4446_RC	40	37	48	41	28	48	39	30	24	23
ATCTAGACACTCATAC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GCGCATCAAGAACCAG	ref_4446_RC	3	5	2	3	4	3	1	1	1	4
CGCCCCTTTATTATTA	ref_4446_RC	40	63	57	44	76	60	75	43	73	47
TCGAACCCGTTTAGTA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
AGGCTATCCTATCTCT	ref_4446_RC	0	1	0	2	2	1	3	1	0	1
ATATGGGTGGCTGTGA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
CTTAGCGTCACCTTTA	ref_4446_RC	29	25	35	28	42	26	27	32	33	21
GGGCCTAGCAGGCTAC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GGAGATCGTGTCGAAT	ref_4446_RC	9	2	4	6	5	2	4	3	8	4
GCTCATTCGTGTGTCC	ref_4446_RC	16	11	5	10	11	10	12	9	8	8
GGCAAGACGTTTCACA	ref_4446_RC	9	14	19	6	28	22	18	18	21	23
GGGCTCGTTGGCTCCA	ref_4446_RC	119	111	166	135	98	120	134	118	128	109
CTGTAGGTAACATTCT	ref_4446_RC	56	71	73	55	68	51	87	59	65	58
CTTCGTCTTTCTGTGG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GTCCAATATTGCTAAT	ref_4446_RC	11	8	12	13	9	13	11	14	11	12
ATCATGATACGCACCG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GGTAAGCGGGCTGGTC	ref_4446_RC	62	42	58	65	50	42	57	62	60	37
AGGCTGTTAATAAGAC	ref_4446_RC	24	29	27	23	31	18	33	22	25	23
AATGTTTTATTGTGAT	ref_4446_RC	29	26	21	27	18	20	27	18	28	19
CGTTCGTAATGAGACA	ref_4446_RC	22	27	29	29	15	17	23	16	29	18
ATTGCTTAACTTTGGT	ref_4446_RC	29	30	49	36	35	37	31	33	47	27
AATCTTCCCGAGTGTT	alt_4446_RC	13	10	14	23	17	14	18	15	14	14
AGATGGACCGCGGTCA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GCGGGCGCTCTGCGTC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TTGTCTAGAACAGTTG	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCTCAATCCCGCC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TGCCGCCGTTTAAACC	ref_4446_RC	2	4	9	3	2	7	5	6	7	2
CCGTGTATGTTTCACA	ref_4446_RC	39	53	46	40	53	47	53	35	56	55
AGTTTGAAGTCACAGG	ref_4446_RC	98	98	126	119	101	115	94	95	118	91
TTGCTCGAAGAAGAGT	ref_4446_RC	3	10	4	2	9	11	10	6	12	7
CGATGTGACAATGGAC	ref_4446_RC	50	50	58	44	43	55	58	42	48	44
CCCATCGGTATTTATG	ref_4446_RC	19	32	27	29	35	26	32	21	44	18
CACGCCCTCCGATTTA	ref_4446_RC	18	13	18	15	13	12	10	12	20	14
TTAGAACACCTCTATA	ref_4446_RC	48	59	42	34	45	36	35	43	62	29
TATTTTTTTCGGTTGC	ref_4446_RC	15	9	14	12	9	10	17	9	6	11
TTGTAGGGTATTTAAT	ref_4446_RC	2	7	10	4	6	4	10	4	5	10
AACCGTTTACCCCCTT	ref_4446_RC	37	42	47	47	41	33	41	37	55	34
AAATTAAATCTTCAGA	ref_4446_RC	360	285	441	385	335	323	359	301	363	270
CTCACAACACAGTGAA	alt_4446_RC	4	16	27	18	18	8	20	19	16	7
CCTACGTGGTGTCTAG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GAATGAATCTGCTTCA	ref_4446_RC	21	19	25	22	27	20	16	25	19	16
CAAAATTCTTTTTTCC	ref_4446_RC	66	46	75	69	45	65	57	55	42	71
CTTTTATATAATTATA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GTGGTCTCTTCTGTCC	ref_4446_RC	9	34	21	14	35	10	29	13	30	9
CGGTACCATGGGCGGC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TCATCGTTACCCGTAT	ref_4446_RC	54	57	57	52	50	42	52	41	48	46
ATTTATAGTTGTGAGT	ref_4446_RC	48	63	68	86	78	63	58	70	84	64
TCATTCTTCTGAGTTG	ref_4446_RC	42	34	44	37	33	41	38	33	38	26
GGGCCAGTTAATAGGA	ref_4446_RC	22	17	23	12	16	22	18	17	12	20
GTCAGCCGACGTGCGT	ref_4446_RC	8	12	24	11	16	12	16	7	10	10
TAGTTTGCTCTTTAGT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GTACATATCTTTCCAG	ref_4446_RC	23	16	30	27	24	23	27	26	27	22
CTCCGCTACCCCTTGT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GAAACGGCCTTGAACT	ref_4446_RC	15	22	18	17	16	19	23	14	21	14
GGTAGATGTTCAGTTA	ref_4446_RC	30	51	40	48	33	60	50	45	55	37
ACAACAGTAGTATAAA	ref_4446_RC	9	0	6	2	0	2	2	6	7	3
GTCTCTTGCATCGGGC	ref_4446_RC	13	16	13	13	16	20	18	12	12	14
TTGGTAACGGGACCGG	ref_4446_RC	36	32	41	37	33	33	37	37	44	27
ATTTCGTTCGAATGAT	ref_4446_RC	0	3	0	0	0	4	0	0	0	1
GCTTCCCTTTTGACTG	ref_4446_RC	17	21	14	21	24	22	27	16	17	18
CTTCACTCGTCGAAGT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TTTATTGGTGTAGCCG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ACTTTCCAGTCTTCGT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TACAAGTGGTTAGTGT	ref_4446_RC	5	4	5	4	4	3	7	5	19	3
AACCTTTACCCCCGGA	ref_4446_RC	12	16	19	15	17	18	21	10	19	13
GCCGTGTTACTATCTC	ref_4446_RC	38	47	39	31	43	35	24	32	33	26
CAGGGCGCTGTGATCT	ref_4446_RC	83	94	146	87	95	94	115	79	94	89
TCGTAACATTACGATC	ref_4446_RC	46	52	71	50	44	55	69	51	61	53
ACTTCTACTATTCAGT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ACAATCCTGGGTATTG	ref_4446_RC	19	21	33	20	26	26	27	21	19	22
GACCTCGGTCCGTGCC	ref_4446_RC	1	3	3	5	4	2	5	2	5	3
ACCTTTACTCTTCAGT	ref_4446_RC	70	71	68	73	70	57	81	48	77	67
AACTTTAATCGCTGCT	ref_4446_RC	89	95	111	98	79	115	91	96	114	99
CGAACGGTACGTAAAC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
CCTCGGGGTTTTTTGG	ref_4446_RC	38	48	39	42	86	41	61	44	69	40
CTCCACGTCATTTCGT	ref_4446_RC	21	24	31	24	43	24	43	24	36	19
GATCTTCTTTTTACCA	ref_4446_RC	78	60	81	70	38	68	76	49	52	66
TGCCCGATCGCATATC	alt_4446_RC	37	37	44	39	53	55	40	26	54	36
TTTTCACTTAGGGTAG	ref_4446_RC	230	226	254	263	242	220	297	205	260	190
GTGATTCGCGAATCTC	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
CTTCTACCTGCGAATG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TTAACGCAAAAGATCT	ref_4446_RC	31	46	43	26	34	12	32	28	34	44
AGTTCTTGGTATGACC	ref_4446_RC	4	4	2	7	2	8	2	7	4	7
TTCCATATTTGTCACT	ref_4446_RC	16	8	16	20	4	18	11	17	8	16
CTGGGACTCCTCTTGA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TCGGTGGCCCCGAATT	ref_4446_RC	52	43	65	34	30	40	51	29	34	49
CGATAGCTCAAGGTCC	ref_4446_RC	32	33	54	27	35	42	36	33	32	39
CGACTCGAGTTTCACC	ref_4446_RC	25	28	36	20	30	23	27	32	41	11
GGTGTAAGCACAAGGA	ref_4446_RC	28	20	24	20	24	25	28	29	19	25
GCATTGTTTACTACTT	ref_4446_RC	51	49	63	58	66	53	74	54	79	60
GATAACAAGAAACCGG	ref_4446_RC	10	10	11	22	13	20	10	12	11	16
ATAATACCTTGATTGT	ref_4446_RC	110	86	96	124	118	80	78	104	94	91
GGATACTCCACGTTTA	ref_4446_RC	67	91	88	79	107	58	101	61	105	69
TTGGGCATGCGCAAAG	ref_4446_RC	30	44	55	48	42	39	42	44	59	37
CCATTTCTCCCTTTTT	ref_4446_RC	25	27	26	26	24	19	25	27	30	20
CACGTCTGACTATAAT	ref_4446_RC	11	12	5	9	10	5	15	6	13	6
ATTCACAGCATTCACA	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
ACGCTTCTTAGACAGA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGGTTCTTACTC	alt_4446_RC	60	75	65	55	90	62	88	48	94	46
TGATCAGTCAGCTTCT	ref_4446_RC	105	90	120	103	64	106	93	73	111	71
TTAAGCGCATTTAGGG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
TTTAAATACTCGGCGG	ref_4446_RC	24	25	33	15	23	22	28	23	30	18
GCCCCGACGAAAGCAT	ref_4446_RC	58	57	54	69	45	50	39	49	47	54
CCATTGTCCATTGTCG	ref_4446_RC	17	22	33	28	34	34	29	20	30	26
TTGGAGCATGTCCATA	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GTAATTTGTAATCCTG	ref_4446_RC	22	20	34	16	12	21	24	24	13	13
TGGGACGGACGTCCTT	ref_4446_RC	41	41	66	49	43	40	55	33	52	30
CGTGAATTGCGGGATG	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GGAGACCGTGTCGAAT	ref_4446_RC	0	0	0	0	0	0	0	0	0	0
GTTTATCCTCATCTTC	ref_4446_RC	27	24	18	28	24	21	18	29	25	22
TCTTTTCTCCCTATGG	ref_4446_RC	80	89	92	81	78	87	87	73	77	65
GAAATAGGCCCATCCC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTCTAGTGTCAAA	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCTCAATCCCCA	alt_2009_reverse	8	9	4	4	7	4	8	3	12	8
TCTGTTTAAGCTTACT	alt_2009_reverse	32	51	37	28	54	34	58	39	43	27
CTAACCCTTAAATTGC	alt_2009_reverse	36	76	40	52	88	32	64	44	71	39
GGATTCTGCTATCTAT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCTAACGGGATCAATC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTGGTGTCGCAGG	alt_2009_reverse	21	30	27	7	25	13	9	21	29	18
GGCGTTTCCGCGGAGC	alt_2009_reverse	20	22	19	8	21	10	11	12	23	18
ACGCGTTTCCGCTCAA	alt_2009_reverse	60	101	68	72	98	60	86	49	114	59
TAATATTTAAGTAAGC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCGTGAACCTTGG	alt_2009_reverse	56	86	88	36	87	44	89	48	115	52
GTCGAGTTTATCTTTT	alt_2009_reverse	0	0	0	1	0	0	2	2	3	0
CGCGACAGTAGGTCAG	alt_2009_reverse	32	55	47	25	77	37	77	39	94	29
TGACCCAGAGTGAATA	alt_2009_reverse	66	72	68	53	83	42	91	49	91	55
TCACAGGGGTGTTATT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CGTGAATCTAATCTAA	alt_2009_reverse	75	127	116	96	122	74	144	99	146	73
GACATAAATCATATTG	alt_2009_reverse	37	53	33	30	52	36	48	41	67	43
ATCGGTCATACCCGTT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTTTAAAAGGTGG	alt_2009_reverse	33	52	32	35	61	35	51	39	49	23
TCATTCGTTTATGCTT	alt_2009_reverse	33	56	34	51	64	29	78	27	53	28
ACTTTTTGAGTATCTT	alt_2009_reverse	36	54	47	52	50	25	55	29	77	24
GGAACCATTTTTGCTT	alt_2009_reverse	35	57	46	33	50	38	59	30	40	32
ACCAAGAACCGATTTC	alt_2009_reverse	16	29	34	22	49	23	40	27	43	19
CCATGCCGATCGCTTG	alt_2009_reverse	14	21	17	17	23	12	27	10	28	9
TCCGAATCGATTGTTG	alt_2009_reverse	10	17	8	8	21	12	30	8	23	5
CGCACTGGCCTTATGG	alt_2009_reverse	75	99	125	131	119	96	126	99	112	73
GGGAATTTGTTATCTC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTCATCCAGCCTAACG	alt_2009_reverse	11	25	29	20	30	28	34	15	37	11
CAATCTTCCGCGAACC	alt_2009_reverse	32	51	41	40	52	25	39	35	48	20
CGGTCTCTATGCCAGA	alt_2009_reverse	2	14	4	2	9	1	11	1	18	0
GAGAGTTCGCATCAAA	alt_2009_reverse	63	73	62	54	71	59	76	45	76	45
AACTACTGCCCCTTCA	alt_2009_reverse	4	13	5	6	10	10	14	6	14	9
GGCCGTTCACTGTCCT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTATCTCTTGGCTTTT	alt_2009_reverse	25	46	28	26	38	21	38	31	38	30
CAAGATCTTCTGTACT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAAAAAACCACGG	alt_2009_reverse	7	7	7	7	10	10	17	4	7	5
CCGGCCAAGATCAGAG	alt_2009_reverse	9	18	12	13	20	7	21	13	18	8
GTTAATCTTTGCGCAG	alt_2009_reverse	24	39	35	22	33	23	41	31	42	29
TGGGAGTCATATTGCT	alt_2009_reverse	22	27	21	15	16	22	20	17	30	14
CAGCTCTCATTCGGCG	alt_2009_reverse	15	15	13	15	15	9	25	10	23	15
GTGCAAACATCCCTCG	alt_2009_reverse	13	8	9	5	16	7	4	5	12	3
AGGTCCAGAACGTTGG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCCTATAAATCCG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GACCTATTCATACGCT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTTATTCCCTCAAGCC	alt_2009_reverse	25	54	19	31	48	27	55	17	50	20
ACACGCGGGCAGCTAG	alt_2009_reverse	35	36	37	32	20	24	46	25	37	27
TTATTATTTCGAGCCC	alt_2009_reverse	120	204	135	133	148	104	194	98	192	108
GACGTTTTGCTTACGA	alt_2009_reverse	88	120	93	90	133	79	139	89	173	65
CTACATACCTGATACC	alt_2009_reverse	4	13	8	6	26	5	20	6	21	4
TCGGTCCGCGAAAAAG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGCGTCCCATCTT	alt_2009_reverse	58	102	65	54	89	49	94	37	109	49
CCATTAGAAGCAATTG	alt_2009_reverse	7	14	5	6	24	3	22	8	19	4
AATGTCTCTATATGCG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TGAACCATTATACCAG	alt_2009_reverse	13	21	17	14	33	27	34	20	46	15
AAGTTTTAACGTCAAC	alt_2009_reverse	20	32	34	34	35	18	30	16	37	25
TGGCCTGTTGCTCTTG	alt_2009_reverse	35	66	33	31	58	33	66	39	72	39
CGATGATGAGGTGCTT	alt_2009_reverse	31	55	43	35	59	40	64	30	64	45
GGGCGCAGGCGGATCG	alt_2009_reverse	1	7	6	7	5	0	2	5	11	5
ACCAGCATCCTTGATT	alt_2009_reverse	24	54	36	25	45	22	52	28	58	24
ATGGAGATCTAGCTAT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
AGCGGAAACCTTCCGC	alt_2009_reverse	48	76	52	39	78	48	89	40	83	33
GCGGTGTTCTCTGTTG	alt_2009_reverse	26	27	17	15	23	9	22	17	33	11
GACCGTGACTGACCAT	alt_2009_reverse	34	57	44	27	56	33	57	34	61	30
ATATCGTTATTTAACC	alt_2009_reverse	3	1	7	0	0	0	4	1	0	1
TATGTCTCTATATGCG	alt_2009_reverse	169	297	213	199	309	178	350	166	317	171
CTTCTATTCTTCGGCG	alt_2009_reverse	42	35	38	17	40	28	48	15	53	25
AATTACGGTGCGCTCA	alt_2009_reverse	36	30	23	23	35	17	38	27	31	18
CCTCTGATGGGTTACA	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTAAACGTCTTTTCCC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTTATGTGCGCCATTT	alt_2009_reverse	15	15	16	15	18	9	19	9	16	10
TAACAAACACTTTGGC	alt_2009_reverse	26	60	33	23	36	35	53	32	49	22
ATCTCTCTTTTAAATC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTCGTCGGGAGTA	alt_2009_reverse	7	0	5	3	7	4	5	5	11	6
TATTTCGTCTACTCTG	alt_2009_reverse	6	16	9	7	23	7	20	6	30	10
CAACCTTTAATTGGCT	alt_2009_reverse	12	32	17	9	28	14	26	12	38	8
GTCCGGTTGTCTAGTT	alt_2009_reverse	3	13	1	5	9	2	16	3	13	8
GATTTCCGCAAAGGCT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCCGACCGCTCAGATG	alt_2009_reverse	1	1	6	6	4	3	4	3	3	1
TGTTTGTTATACTTGC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GAGGAGGCCCATTAGA	alt_2009_reverse	7	10	3	7	11	4	6	6	7	7
GCAACAGGTATGTACA	alt_2009_reverse	14	20	15	14	14	9	26	13	29	7
GTTTCTCAGCTATGGC	alt_2009_reverse	34	23	27	19	30	23	30	24	41	22
TTGGGGGTTTTTTGGT	alt_2009_reverse	20	45	29	17	30	20	33	25	45	15
CTTGGCTGTAGGCATT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCAATGATCCCCC	alt_2009_reverse	20	20	12	11	17	18	18	7	33	10
TTCGGTCTGCCCCCTG	alt_2009_reverse	22	32	19	17	21	18	28	22	36	21
TCATTAGTTAATTACC	alt_2009_reverse	8	14	12	9	23	5	13	2	12	9
TTGCTACGGTCGCACG	alt_2009_reverse	13	15	12	6	17	16	32	9	20	14
GCCCGTTGGCGACTCG	alt_2009_reverse	48	100	61	53	105	55	103	54	95	45
ATGACTTCAATCGTCG	alt_2009_reverse	6	11	5	10	9	9	12	8	19	9
ACCCGCGGTCAGTTCT	alt_2009_reverse	32	73	38	49	114	29	87	26	91	29
ACTGGTAATTGCCACG	alt_2009_reverse	25	40	43	31	52	38	38	30	50	26
CTGCGGTATGACCGCA	alt_2009_reverse	45	70	59	51	65	45	56	44	91	43
ATCACATACTTGGGCA	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTACTCGGCCGAG	alt_2009_reverse	115	144	161	127	177	122	182	123	201	104
ACAGCATCAAGCTTAC	alt_2009_reverse	23	48	38	48	52	36	67	47	64	35
GTCCAGTGCTTTACGA	alt_2009_reverse	81	113	85	75	153	72	113	66	132	59
ACTCTTTCTCAGTTTC	alt_2009_reverse	9	8	9	6	5	4	24	5	9	8
GCAAGCTAAGTGCTAA	alt_2009_reverse	76	120	97	77	146	77	137	79	136	66
GGGAAACCTTATATAG	alt_2009_reverse	39	53	33	22	74	28	69	29	52	23
ACGGCGTATTACGAAG	alt_2009_reverse	43	64	61	47	88	51	80	50	96	34
TACAACAATCATTGTA	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGGGGGGCTGGCC	alt_2009_reverse	41	60	43	35	51	29	46	39	56	29
TTTTCATTCGATCGCG	alt_2009_reverse	21	33	20	14	34	34	39	16	53	16
CTTGTGCCTGGAGTGT	alt_2009_reverse	28	65	39	29	86	23	66	26	60	22
GAGAGGCTACGTCTAG	alt_2009_reverse	5	16	9	2	12	2	14	3	17	5
CCTACAGTGTTTGCAT	alt_2009_reverse	31	42	38	27	46	22	60	27	46	33
CTGTATGTGCCGTTTG	alt_2009_reverse	10	14	9	9	16	5	18	8	11	4
GGATTTTTGTGATTGG	alt_2009_reverse	51	64	48	49	66	50	71	44	78	44
TCCAACACACGCTTAC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTTAGGGCAGTA	alt_2009_reverse	52	72	57	54	80	33	70	38	76	42
TTTGTATTTGTCTGTA	alt_2009_reverse	10	25	13	6	20	9	12	8	9	10
GTAAAACACTGGGTTT	alt_2009_reverse	48	100	84	70	106	64	103	60	105	57
TCGTCTTGTATACTAC	alt_2009_reverse	41	63	40	25	67	25	59	32	81	38
GCAGTCGTAATGCTTC	alt_2009_reverse	29	23	18	24	34	16	24	25	33	12
ATCCCCCTGTGACGTC	alt_2009_reverse	17	25	6	20	15	8	26	9	23	16
GTCAAGCGCCATCCAT	alt_2009_reverse	8	3	3	3	17	10	5	5	7	3
AGCTAGTGCCCTGTAT	alt_2009_reverse	11	33	10	19	30	16	30	9	31	5
TTTTATTATGGAGGAG	alt_2009_reverse	12	33	34	23	36	24	29	23	31	13
TGTGTCCTTGTACTGG	alt_2009_reverse	83	110	107	60	165	87	164	71	153	66
GGACGAAGCACCTTGT	alt_2009_reverse	27	36	30	39	63	30	53	25	48	32
CTATCATGTCAGCATT	alt_2009_reverse	6	12	12	9	16	10	10	10	22	10
CCTGTTTTATGTACAG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCGATCTTTATGG	alt_2009_reverse	9	13	18	18	17	13	18	15	15	18
TACGGATAGGCAAAGG	alt_2009_reverse	95	148	136	99	146	98	181	96	155	84
TCCTAGACATCGTGGC	alt_2009_reverse	14	12	14	9	20	7	14	10	20	4
CAAGAACTCAACACTT	alt_2009_reverse	58	66	59	35	55	61	56	41	81	40
GTTGTGAAGTCTTATG	alt_2009_reverse	38	57	48	44	78	34	83	25	93	25
TCGTGTAGCGGCGTTA	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGCCAAAGTCCAC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTGTGATGTCTTT	alt_2009_reverse	15	42	24	33	40	33	34	22	44	15
GCGCTCTTCGCGACCG	alt_2009_reverse	8	13	11	8	15	9	12	15	18	10
ATACGGAGGTAGTGCA	alt_2009_reverse	33	43	29	22	30	23	48	19	30	17
GTTGTACCATGTTGTC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCGACCTCCGCGTGTC	alt_2009_reverse	10	14	7	9	25	4	27	8	20	8
TCTCGTTTCTGCTCAG	alt_2009_reverse	3	11	4	4	5	4	6	5	11	3
GAACACAGGGGTGGTA	alt_2009_reverse	58	73	65	57	45	39	80	59	92	38
ATATAGTCGGTCTTTC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCGGGGGCTTATG	alt_2009_reverse	9	10	7	5	9	14	17	6	10	11
TCGCGCTTGGCCAAAT	alt_2009_reverse	6	12	7	8	23	14	19	3	18	4
CACCCTTACTCAGGGG	alt_2009_reverse	28	37	25	32	48	24	41	23	53	28
ACGCATTTACGGCTAA	alt_2009_reverse	5	5	6	5	4	4	9	4	9	6
GGAGTGCGATAGCCAA	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CGTGACATGGCACTCT	alt_2009_reverse	116	139	106	72	160	88	109	106	186	97
TTTAGGTAGTTTAAAT	alt_2009_reverse	6	17	6	6	4	10	14	3	5	5
TATTATTAGGTAGGAC	alt_2009_reverse	3	3	1	5	3	3	3	2	5	3
CGGCGAAGAATGTTTC	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
GATTTATAAGTAAATT	alt_2009_reverse	7	11	10	7	17	13	20	10	20	7
CCTGGGGTGATGTCAT	alt_2009_reverse	12	7	6	15	10	6	5	5	6	11
AGATCTTACTTAATAA	alt_2009_reverse	7	12	9	13	10	10	13	6	10	8
GTCACTTGGACTGCGT	alt_2009_reverse	23	51	19	23	48	18	65	15	52	9
CGACATTGTGTCGAAT	alt_2009_reverse	12	18	12	22	18	8	32	17	21	10
GAAAATTTTTGGTCAA	alt_2009_reverse	23	47	22	27	44	27	44	31	49	26
CCCGTGGCATGACGAC	alt_2009_reverse	16	6	18	8	13	10	7	7	10	8
CTCAGGTCTGCGGGAC	alt_2009_reverse	32	38	52	35	61	31	54	34	58	19
GGTTTCTAGCAGCCCG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TATCCACTTGCCATCA	alt_2009_reverse	13	26	27	24	36	16	43	18	35	25
AGAATTCGCACGGACG	alt_2009_reverse	89	166	115	100	129	86	153	76	147	80
AGGGATTTTAAGGGAG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCAAGTCGACTAG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGTCATTTTGGAA	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
AACGGTACATCTGGAA	alt_2009_reverse	72	116	90	55	96	65	117	69	136	51
GATAGGAACATCTTGT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TAACTTATTTTCTTTT	alt_2009_reverse	2	2	8	4	3	4	8	4	5	4
ATAACTGTACGGCGCG	alt_2009_reverse	32	46	39	38	49	31	65	38	55	26
TAGAGTGGTTTGCCTT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTTGTAAGGTATA	alt_2009_reverse	113	207	162	97	223	97	180	124	221	99
CTCACCGACTCGGGGT	alt_2009_reverse	0	4	1	2	3	1	7	0	3	0
AGCAAGCTACTCTAAG	alt_2009_reverse	116	178	165	118	235	116	214	131	187	119
CAGTCTTTCTACGCGG	alt_2009_reverse	35	89	74	58	102	67	105	42	97	45
CGCGCGTCCGACCTTG	alt_2009_reverse	40	60	53	40	66	33	65	39	60	32
CCTTATTTTCATGTTA	alt_2009_reverse	52	134	54	30	119	51	99	59	101	28
CCCTCTTTCTTGTCAG	alt_2009_reverse	7	10	7	6	15	5	12	10	12	3
ATCCCTCCCTGACACT	alt_2009_reverse	26	59	29	22	55	42	56	35	71	44
AATTATCTTCACCCAT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TATTATCTTCAACCAT	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGAGTATGTAGAA	alt_2009_reverse	13	22	24	14	16	9	22	17	22	6
CCGGTGATTGGTGCTG	alt_2009_reverse	0	0	0	0	0	0	0	0	0	0
CTATGTACTTGCCGCA	alt_2009_reverse	24	28	29	16	34	20	22	23	38	20
GGCTCTACTGTTTCGT	alt_2009_reverse	53	74	48	46	74	56	71	34	89	47
CCGTGACTGAGGATGG	ref_3516_upstream	9	3	17	13	4	17	6	15	5	10
TGACCTGTTGTCCCAT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCTTCCGATTAG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGCGACGTGCCTA	ref_3516_upstream	1	2	6	2	0	1	0	1	1	1
GCCGTTATGTATTCAC	ref_3516_upstream	62	10	48	54	24	45	20	57	18	51
TACTAATTAAGCAGGA	ref_3516_upstream	137	27	162	134	28	154	30	125	45	129
GGCCTTCTGCATCAAG	ref_3516_upstream	137	25	106	110	27	98	28	121	31	83
TGGACATTTCTGGAAT	ref_3516_upstream	43	10	54	40	8	57	16	41	11	45
TTATCTGGTTAGATTT	ref_3516_upstream	324	77	375	334	97	283	84	298	106	253
GTTTGTAGCAATAAAC	ref_3516_upstream	142	38	196	140	55	150	40	156	47	140
CCAGCACAGTGTTCGG	ref_3516_upstream	109	34	133	114	35	104	32	106	32	106
CCTCGCCCCTGCGGTA	ref_3516_upstream	55	17	83	46	14	44	17	49	15	48
TTTCTGTGCCTCTATG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GATACTTTCGAGGTTC	ref_3516_upstream	30	11	33	43	13	21	17	35	11	21
ATATTTTGCTTGGGGT	ref_3516_upstream	191	50	225	244	49	222	51	218	54	167
GGTTCGTAGACTGTTT	ref_3516_upstream	68	27	85	75	19	53	17	64	31	62
GTGACCACTAGAGTAT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CTCGAGGTGAACGAGG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAAAACTATTTAT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCCTGTCATTGTA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GCAGAAGTGGACGGTT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGGGTTGATTCTT	ref_3516_upstream	38	12	52	60	13	35	12	51	29	52
GCTGGTTTAAGATCAT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TAACCAGTCTTAGTAT	ref_3516_upstream	4	5	2	2	5	2	3	1	1	1
CACAAAGTTCGGGGCG	ref_3516_upstream	19	17	38	18	6	25	11	26	10	14
TGTAGATCCTTAAGTA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
ACACATAGTTATCATG	ref_3516_upstream	16	6	19	27	4	29	9	21	6	11
TGCGTGTTTCCGGAAG	ref_3516_upstream	5	0	4	5	1	4	1	6	2	8
TCCTTGGGGGCAGGTG	ref_3516_upstream	104	38	136	136	38	110	33	134	46	97
GGACCGGTGGCCACGA	ref_3516_upstream	57	21	80	64	17	82	13	61	15	52
TCGTCTATCGGACTTG	ref_3516_upstream	70	15	109	83	27	43	19	74	24	52
ATGCTGACCGCATATA	ref_3516_upstream	162	50	214	190	52	177	44	170	55	159
TCGCCATGATCTGGTT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGGGACTGCATTCGGC	ref_3516_upstream	71	29	52	65	32	39	20	68	21	43
GTCCGCGCTGCTGTCT	ref_3516_upstream	21	3	29	38	10	26	3	25	8	23
GGGGCCTCACTGGGTC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGTTTTTTGATTT	ref_3516_upstream	143	44	174	156	38	125	44	128	33	99
GTTTTTGTAAGGTCTC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCGACAGGGAATT	ref_3516_upstream	120	47	166	167	43	111	57	129	67	85
CGGTTCAGCTTTAGCT	ref_3516_upstream	30	30	53	37	21	28	23	34	33	25
TCGCGGTACTGGTAGC	ref_3516_upstream	50	6	56	36	15	37	8	44	24	32
AGGTGCCTCTTGGTCA	ref_3516_upstream	13	2	16	15	6	12	7	14	5	12
ACCCTCTACGGTGACA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GCATTGACATCGCCCT	ref_3516_upstream	82	12	107	86	16	74	15	62	17	60
CCCCCCATCATCGTAC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GTTTACGACACCGGTT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGGCTATAGCTTT	ref_3516_upstream	197	63	229	184	50	180	55	188	54	183
CCACAAGTGCCCCTAT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGGGATGCCCGTAGTG	ref_3516_upstream	401	124	498	428	136	383	101	391	133	367
GCTCCAAAAAGGGTCA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CCTGATGGATGATGGC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTGACTTGCGCCAGTT	ref_3516_upstream	32	11	34	51	14	41	4	43	10	29
TTTAGACTTGGTAGGG	ref_3516_upstream	81	20	124	128	26	91	33	103	27	89
GTAGGTGGGTAAGTCG	ref_3516_upstream	125	22	135	131	37	116	42	130	36	109
GAGTCTTCGACAGTAC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TCCATACCTCGGCTCC	ref_3516_upstream	36	14	61	43	7	34	11	40	10	29
AACTAATGCTTGGTCT	ref_3516_upstream	88	29	112	99	19	87	28	88	23	91
CATGGTCCGAGACACG	ref_3516_upstream	113	19	117	104	33	94	26	121	37	98
CTTTGACGCAGTACTG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
AATTGTGACTTCTGTG	ref_3516_upstream	52	23	49	50	19	57	12	46	11	43
CCGTAGGATCATGCCG	ref_3516_upstream	84	23	76	97	30	86	21	84	23	86
CCCGCGTTTAATCCTT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCCACCCTAACGG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTTTTTAGTAGAT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTGTATGAACATT	ref_3516_upstream	151	77	240	181	89	189	62	157	72	161
TGTCATCCACACACGA	ref_3516_upstream	59	18	67	74	17	37	9	40	28	40
GCACGTGGGTCTTACA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TCACTCCATATTTCCC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAACCCGTGCTTA	ref_3516_upstream	104	19	133	121	32	103	26	90	35	99
AAATTTTAGATATACG	ref_3516_upstream	156	49	230	224	55	158	40	171	58	176
TAATTTAGTACAATGT	ref_3516_upstream	14	0	14	21	3	11	3	11	3	10
TACTGTTGAGCATCCA	ref_3516_upstream	311	83	365	324	92	324	102	273	80	270
TATTCTCAACCAACTC	ref_3516_upstream	15	4	25	30	7	23	3	26	6	24
GCGTGATCCAGACCCT	ref_3516_upstream	88	21	99	78	21	79	26	61	20	71
GAAAACGTCGGCGTGT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCCACAGGTTCAA	ref_3516_upstream	53	13	53	38	11	48	14	32	13	24
ACAACACTTATTGAAG	ref_3516_upstream	97	25	98	94	25	70	18	75	23	95
GCTGGTCTGTATAGGC	ref_3516_upstream	15	6	31	22	5	20	7	21	5	18
GGATACTCTTGTGCCA	ref_3516_upstream	254	67	326	296	81	261	64	235	69	226
TGGTCCCGCGTACACT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GGATGGATATTTTGAA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGTGTGATTGTAT	ref_3516_upstream	86	18	108	89	22	58	31	79	16	69
GAGTGGGCTTTTTCAG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CATGGCCCTTGAATTC	ref_3516_upstream	22	5	25	19	4	30	10	27	4	23
TTTGAAAATACAGATG	ref_3516_upstream	360	132	513	379	111	343	123	341	122	358
ATATTGTTACCAGTGT	ref_3516_upstream	270	69	324	284	65	247	85	240	74	224
AGTAGGCATCGCGGGT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTAAAGTAAAGT	ref_3516_upstream	88	27	91	91	24	80	23	95	30	97
GCCTCGTAAGGGTTTG	ref_3516_upstream	32	14	56	43	10	31	9	26	16	33
CCCCCATCATCGTACG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGACCCCAATGCCCTC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
AAATCATTCTCGTCGT	ref_3516_upstream	107	29	151	117	31	112	31	117	36	94
CTGTTGCTGGAATCTC	ref_3516_upstream	51	26	50	46	14	48	11	56	16	38
GATCCCCCTACCCTTA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTAATACCCTGCT	ref_3516_upstream	108	25	138	109	32	111	30	106	36	93
GCGCTGCACTTAGATT	ref_3516_upstream	38	14	62	46	13	36	10	33	16	37
TATGGCAGGGCAATCA	ref_3516_upstream	121	20	139	145	25	113	32	105	29	105
TCTTACTGCATACCTC	ref_3516_upstream	94	24	124	97	18	97	35	109	25	71
TCTTGGAGGGCTTTTG	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
ATTACATAGTGGACAG	ref_3516_upstream	72	20	114	76	23	57	16	70	26	74
AATCGAAATTTCGACT	ref_3516_upstream	118	39	154	158	47	93	48	102	53	107
GAGTTCATGGGCTTTT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGGCTTTTTCGGA	ref_3516_upstream	152	47	189	178	50	168	44	163	56	155
GTATTTGAATTCCAAC	ref_3516_upstream	12	1	12	8	4	13	4	7	8	8
CGACAGTATCTGGGTG	ref_3516_upstream	3	1	5	2	0	1	1	0	3	1
AAGTGCGCCGTTACCA	ref_3516_upstream	24	3	30	28	17	19	9	22	14	23
GTATTTCAGCTCCTGT	ref_3516_upstream	52	15	90	67	17	50	21	55	25	59
AAGTGTCTGAATGGCG	ref_3516_upstream	212	56	287	261	68	211	59	202	42	199
AGGCTCTATGTGCCCA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTCGACTAGTACT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTTCATATCCTCC	ref_3516_upstream	63	16	80	69	21	67	15	52	21	71
CGGTTGGTATTGGTAC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
GCATTGAAGCATAGGT	ref_3516_upstream	378	111	479	442	104	371	134	395	130	320
CGTGCTCTGGAGGTTA	ref_3516_upstream	168	47	203	184	47	154	48	171	52	131
TGCGAATCGGTCGCCT	ref_3516_upstream	27	8	41	45	10	52	8	24	10	32
CGCGAGATGACTTATG	ref_3516_upstream	14	0	19	12	2	7	3	13	4	8
TCGTCTCGGAAAGATG	ref_3516_upstream	51	18	87	74	21	51	13	58	11	58
GGTTAGAGTATCGATG	ref_3516_upstream	220	67	235	226	68	166	80	201	82	219
TGGTGGCGTTGGCCCC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CACGTGGGTCACAATT	ref_3516_upstream	140	28	159	148	33	113	35	157	28	134
TGCTGTTGGGCCAAGT	ref_3516_upstream	49	16	77	94	23	52	18	63	20	55
ATTATCCTCTTGTGTC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
AACGTCTTGTGTCAAT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGGCAATGGCCGT	ref_3516_upstream	78	16	84	68	24	78	24	66	28	69
CCTCGCCCGGATATTA	ref_3516_upstream	211	67	219	188	67	187	82	183	78	161
CCAGCGCCTTCATCGG	ref_3516_upstream	19	9	21	15	6	14	10	14	9	7
AATAGTGCTCTTATAC	ref_3516_upstream	18	2	23	18	5	15	6	20	3	15
TAATAGCCCTCACTAC	ref_3516_upstream	65	34	113	95	36	59	42	80	33	60
AATCCGACAAGACGTG	ref_3516_upstream	29	12	28	40	9	28	10	36	15	27
CTTTATAATTCTGTCA	ref_3516_upstream	77	32	133	96	33	82	27	98	39	74
GTACCTTTGACTGTTT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTCGTCAAACTT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
AATATTTATCTCGCCT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TCGGAATACCAGATTG	ref_3516_upstream	54	18	75	65	20	57	32	63	16	51
GAAAATCACTACTTAT	ref_3516_upstream	38	5	44	38	11	33	4	22	12	31
TTTTCGTATGTGGCAT	ref_3516_upstream	254	54	276	259	78	206	72	254	73	216
CAGATTAAGCGTTATT	ref_3516_upstream	15	6	11	9	1	7	7	12	5	6
ATCGATGATCTGATCC	ref_3516_upstream	233	52	262	243	56	217	60	159	80	196
GGATTAAATTTTTGAA	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGTAACGTGACGTTGT	ref_3516_upstream	54	13	74	58	19	54	17	46	20	58
TTCGTCCATGCCTTGC	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGTATCTAGCGCG	ref_3516_upstream	400	138	518	481	140	419	158	405	129	399
CTCTTTGTCAGCGACT	ref_3516_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCGTTGTTGGTCG	ref_3516_upstream	9	25	13	8	13	14	15	7	14	9
GTTACGTTCGTTCTCG	ref_3516_upstream	85	21	109	96	25	93	18	102	34	118
TACGAGGCCCCCACCC	ref_3516_upstream	104	23	152	124	21	92	32	123	31	104
CATCCTAATGGCGGAG	ref_6034_new	4	4	10	13	11	7	13	5	7	11
TCGGTCCGGTCAGCTC	ref_6034_new	8	21	8	12	8	6	17	5	7	8
CAATCCATAGACTCCT	ref_6034_new	31	30	36	20	24	16	39	26	25	10
GTTTAAGCTCTTTAGT	ref_6034_new	18	27	33	19	36	28	22	23	35	23
TGACCACATTAAAGGG	ref_6034_new	1	0	1	2	0	0	2	1	0	1
GCCGGAGTATATCACG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
GGTCTGTGGTTTGAAT	ref_6034_new	50	73	84	67	75	41	84	65	88	50
TGCAAACGTACAGCGG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
AAATGTTTGTGTTATT	ref_6034_new	25	17	14	29	15	15	13	16	18	8
GTGGGTGTACTACCAT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CAGTTTGCGTTGAAGG	ref_6034_new	17	36	29	25	33	12	31	25	33	17
CTCATCAGGTGGTAAA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TTCGTTGGCAGAATGT	ref_6034_new	12	23	15	12	16	17	19	13	21	12
CTGTTGGCTCAATCTA	ref_6034_new	25	21	26	15	33	18	18	20	34	12
ACTCAAGCGCCCATGA	alt_6034_new	4	7	4	7	4	1	4	7	4	0
TTTTAGCTTCAGCGCT	ref_6034_new	10	11	20	8	20	11	13	8	10	9
TTAAGGAACAGTGGAG	ref_6034_new	1	3	6	6	1	1	6	3	3	3
TACTTGGTTAGTTTTA	ref_6034_new	35	36	25	38	34	26	40	17	36	22
TCTTCGTATGGTCTAG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
AGAAGCTCCGATTTTT	ref_6034_new	9	13	17	21	12	16	10	9	23	11
TTTGGGTTTGATGCCA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CATCTTGTTGAGCAGC	ref_6034_new	39	43	50	46	58	38	30	29	39	34
GAGGTTTTACGGGCAC	ref_6034_new	36	44	34	23	37	30	39	34	46	23
GACGAATCAAAGTACA	ref_6034_new	86	79	95	77	89	68	89	73	82	74
CTTCCAAGATTATTGG	ref_6034_new	21	28	25	29	20	19	26	22	27	16
TTTTGGAACTTCATGT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
GGTTGAAGGTTCCACT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CCGCGGTGCTCTCTTA	ref_6034_new	1	5	0	1	2	4	7	0	4	0
TTGTTAGCTAGAATAC	ref_6034_new	3	7	9	9	3	2	8	6	8	7
CGGTGTTAAGCCCCCC	ref_6034_new	17	9	24	19	25	11	13	7	22	15
CTCACACCGAACGTAA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CATCTCCAAAGCTAGT	ref_6034_new	13	17	19	11	14	12	24	5	6	6
ACCATGCTGGAAAGGG	alt_6034_new	62	65	59	49	61	56	79	50	65	34
TGAAAACTGGCCGCCG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CAATCCCAGACATACT	ref_6034_new	1	0	4	0	0	0	0	0	3	0
AGCGGCTCTAGCATTA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TATGGCTGGTTATATT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CCCAAAGATACGACTT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
ACGTTCAATTTGATCT	ref_6034_new	40	32	38	31	25	25	28	27	34	18
TCAGATTTCGTGCATG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TCTTACGGCTGACTCT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
TTTTCACTGAATTTCA	ref_6034_new	5	4	12	7	10	11	5	8	15	6
GCATACAGGGTCGTTG	ref_6034_new	20	24	21	18	22	20	23	20	20	20
AGTCCATACTTCCTCC	ref_6034_new	15	32	21	22	21	13	19	19	21	18
AGATTAGCGAGATCTA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TGCTTCAATTACGTGT	ref_6034_new	257	375	314	268	376	232	401	269	394	248
CGTAGGTAATAACCCC	ref_6034_new	77	109	100	76	79	61	69	66	84	77
GAGTCGTAATATTCCT	ref_6034_new	11	5	7	12	11	8	11	6	5	9
AACTCTATCTCACGTG	ref_6034_new	12	11	8	10	24	9	3	15	10	5
CTATTCCGACTCATTA	ref_6034_new	23	34	31	14	31	32	38	35	37	21
CTTCGAGAGTTCCCCG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TAGTAAGTTTCCTTCC	ref_6034_new	12	16	21	11	10	10	15	18	16	11
CTTTCCCTGTTACATT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TCGCTCAGCATCTTCC	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CTATTTGTCCGTAAAA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
ACTAGAGAGGACAATA	ref_6034_new	26	24	33	28	23	24	28	35	34	22
TGGAACCTTCATCGCA	alt_6034_new	36	35	31	40	40	34	38	33	38	28
CGCAATCGATAGACCT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TAGCTCGTGGCGAATA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
GTGGTCCCCAAGGACT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
AGTGACTCAATCTCAG	ref_6034_new	48	43	44	37	55	42	62	34	53	27
GTGTCAATTGCCACCC	ref_6034_new	0	0	0	0	0	0	0	0	0	0
ATAATCGTACGATCGG	ref_6034_new	57	74	51	63	48	44	65	58	49	53
CCAGGCACGTTTAAAA	ref_6034_new	27	32	28	29	33	28	42	28	43	24
GGGATGAATCGCTCTG	ref_6034_new	6	5	9	5	6	9	4	5	9	4
CTTGGCGCATTTAATG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TGTCTAAACCACAGTT	ref_6034_new	29	64	62	44	77	42	83	59	54	47
ACAGGCCAACTCTTGG	ref_6034_new	7	31	9	11	37	13	35	6	33	6
GAAATATTCGAATCGT	ref_6034_new	17	20	16	13	12	12	15	16	16	17
GAGTCTGCGCACGCCT	ref_6034_new	18	22	28	10	24	19	24	16	24	21
GTGGACATGTGTAGGT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TTCACTCGCAACAAAT	ref_6034_new	18	24	26	25	28	23	30	21	29	20
ATGATCTCAGGCCTGC	alt_6034_new	18	28	24	20	24	24	26	23	25	28
TGTCCGGTCTAAGCAT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TACGATTCCCTGTTGA	ref_6034_new	24	40	38	32	38	28	28	36	40	18
GTTATGGTGCGCGTCC	ref_6034_new	0	0	0	0	0	0	0	0	0	0
AACCGGGGTACGCCTT	ref_6034_new	25	82	29	30	77	37	74	26	71	11
TCGCAAGGCTCTCTTG	ref_6034_new	6	7	10	7	8	4	8	7	14	6
TTTGGCCCTATCCCAT	alt_6034_new	12	26	21	21	18	7	27	15	14	21
TTGGGTGGGAGCCTTC	ref_6034_new	16	17	19	13	17	14	9	23	16	16
AAAGACGAGACCACTG	alt_6034_new	23	13	19	6	9	13	20	8	19	15
GCCGGACTATATCTTT	alt_6034_new	34	53	36	34	54	38	37	37	47	26
GTGTTCCTTACATCCT	ref_6034_new	7	14	14	6	13	10	15	6	14	4
ACTTATGGGCACCGGG	ref_6034_new	13	29	21	14	25	6	22	15	26	17
ATTAGTCGCTAAGTTT	ref_6034_new	38	56	58	42	77	33	68	34	61	31
AATGATTCAGCTCTAC	ref_6034_new	0	0	0	0	0	0	0	0	0	0
GCGCAAGGGACCCACA	ref_6034_new	19	16	12	12	21	6	13	10	14	11
ACCCGACCTCGGCTGC	alt_6034_new	59	67	79	82	82	67	60	73	59	68
TTTTTCGACTAGCGCT	ref_6034_new	35	48	35	36	52	32	45	37	47	36
ATATTATTCATCTAAA	ref_6034_new	115	128	145	127	143	133	155	128	151	103
TTGCCAGTTTTTCGTA	ref_6034_new	77	83	68	66	99	53	84	55	93	45
CGACATCCAGCACTTA	ref_6034_new	44	74	42	54	50	40	77	39	73	40
TAGCTTTGTCAGAGAC	ref_6034_new	9	2	2	1	9	4	10	2	5	4
CACCGCTATTGGTTTG	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CCGTACGTAAGCCGCC	ref_6034_new	6	3	6	4	3	3	5	1	5	0
TGAATTTTTGGCCCTC	ref_6034_new	0	3	2	2	1	2	9	3	4	5
TATCGAGCTTCGTGCA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
AAATTTCAACCTTCAT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
GCAGTTTATCTATCCA	alt_6034_new	51	68	105	66	71	63	83	65	55	49
CTCGCTTACATCGTTT	ref_6034_new	5	7	9	12	12	7	10	9	11	6
GTAACTCACTTGATGT	ref_6034_new	58	58	43	56	55	51	74	60	81	54
CCGCTTTCTTATCTGC	ref_6034_new	7	13	9	14	8	14	18	5	12	5
GTTTATATTGTTTTGA	ref_6034_new	16	22	25	18	27	13	15	14	15	10
AAACAGGCCTGCCGAA	ref_6034_new	0	0	0	0	0	0	0	0	0	0
CCTTGATTAGTCAATT	ref_6034_new	0	0	0	0	0	0	0	0	0	0
TATTAGTCCCCTACTG	alt_5874_new	7	17	4	12	16	10	20	3	12	9
TTCTATGCTTATCGGG	alt_5874_new	45	67	32	41	59	30	60	35	55	20
GTGCGACTTACAGGTC	alt_5874_new	7	18	10	8	17	5	9	5	16	5
ACTTATACCTAGCGGT	alt_5874_new	63	92	90	68	122	63	97	58	125	72
CGGCCCTGCATATGTA	alt_5874_new	0	0	0	0	0	0	0	0	0	0
GGGTTTTGCCACCCAG	alt_5874_new	32	41	49	38	38	30	53	32	49	33
CTATTGCCTGCAGGCA	alt_5874_new	7	16	14	17	23	9	23	13	20	12
ATGGCCGTCAAATTGT	alt_5874_new	0	11	3	4	9	1	4	4	6	5
TATCCAGGGAACCCTT	alt_5874_new	67	85	90	84	91	72	94	49	120	59
TGCCTAGTACTGCCCA	alt_5874_new	0	0	0	0	0	0	0	0	0	0
GAACGTACTTGAAATC	alt_5874_new	12	10	11	7	13	10	20	12	11	14
ACGCCCCTACGGTGAT	alt_5874_new	0	0	0	0	1	0	0	0	0	0
CCGATTTATGACAAGT	alt_5874_new	131	199	165	148	210	116	260	122	224	128
GATCCGTGGTGATTGG	alt_5874_new	14	27	11	20	25	15	37	14	35	18
AAGCGTGATCGTACCC	alt_5874_new	0	0	0	0	0	0	0	0	0	0
CTGGGTACACGCTTGT	alt_5874_new	37	48	50	37	52	30	61	26	49	33
TTGTAATCGACTCTGT	alt_5874_new	0	0	0	0	0	0	0	0	0	0
GTCTGCTCCACCGTTC	alt_5874_new	15	38	20	14	28	17	37	11	37	12
GCATCATTGAAAGGTT	alt_5874_new	0	0	0	0	0	0	0	0	0	0
CTTCGCACTCCCGCTT	alt_5874_new	2	9	4	1	4	6	7	5	10	5
TGAGTCCTCGGGCTCG	alt_5874_new	16	36	16	14	31	17	29	14	38	17
GGAAATCCGTCACCCT	alt_5874_new	39	48	27	17	38	26	46	23	45	21
TAACGTCGTTATTTAA	alt_5874_new	20	24	21	22	30	24	20	18	17	17
CAAGTTTTTGCGCCCC	alt_5874_new	3	19	9	12	16	5	11	7	12	9
TAAAAGGTGCAGAACT	alt_5874_new	24	39	22	22	24	23	31	24	27	20
TTCACAGTCGTTCCAT	alt_5874_new	0	0	0	0	0	0	0	0	0	0
GTTTTTATTGTACGGC	alt_5874_new	14	17	22	9	15	11	32	12	15	16
CGGATTCAGCTTTACT	alt_5874_new	12	23	19	8	25	7	22	14	21	5
AATGATATTTTTTTTT	alt_5874_new	148	125	133	133	115	138	145	114	113	121
AGCCTCTTTCTGGAGA	alt_5874_new	90	134	98	84	156	78	150	100	131	81
GGATGCCTTCGCTTGC	alt_5874_new	21	24	25	20	24	21	26	28	37	14
GCATCATAATTATTAT	alt_5874_new	10	28	21	21	20	11	22	20	32	10
TAGAATAGGGGGATAC	alt_5874_new	5	7	5	4	11	10	8	9	14	4
CCGGCTTAAGGTGAGC	alt_5874_new	47	66	46	48	82	36	101	33	88	30
CGAATGACTGCAGCCT	alt_5874_new	0	0	0	0	0	0	0	0	0	0
AAACGCATAGCTATGT	alt_5874_new	23	31	36	24	26	35	51	21	51	18
GTGATATCGGAAGTTT	alt_5874_new	11	14	11	11	33	17	15	8	19	18
GTTCGCTCAGCTGTTA	alt_5874_new	7	5	7	4	6	6	8	3	13	6
GTTTCTCAACCGTTGA	alt_5874_new	55	64	59	42	84	47	77	54	78	40
TGTTCCGAAGCAGCTT	alt_5874_new	10	13	10	13	15	3	4	5	17	15
ACAGGTTGTTTGGTGC	alt_5874_new	6	5	11	3	3	4	18	8	8	6
CTTCTCCCCTCCCTGG	alt_5874_new	22	17	9	7	26	8	25	6	31	13
GCCCGGAAAAGGGGCT	alt_5874_new	36	44	30	25	23	22	34	21	52	23
TTTCAGCCATTTGTAA	alt_5874_new	3	12	8	2	14	9	15	6	11	4
TCCCGCCATGAGATCG	alt_5874_new	28	39	37	27	31	26	38	26	39	43
TGCGGTAAGTTGGCCC	alt_5874_new	0	0	0	0	0	0	0	0	0	0
TTGATTGCGTCGTACG	alt_5874_new	7	10	11	4	11	3	13	3	14	6
GTACTGTCGGAATCTC	alt_5874_new	4	15	7	11	13	7	14	9	21	3
GGGAAATGACGGTATT	alt_5874_new	82	113	125	101	129	101	124	106	135	92
CCGACTTCTGATACGG	alt_5874_new	24	12	25	18	31	19	23	24	27	16
CTGGTGCCCGTAGTTT	alt_5874_new	4	8	4	7	9	6	8	1	3	0
TGGGCTTTTCACTAAC	alt_5874_new	19	46	33	24	36	32	32	24	49	22
ACCGCCCCGATTCGTG	alt_5874_new	0	3	0	2	1	0	5	1	2	1
GCCTCAGCGCTCCCCC	alt_5874_new	92	129	131	98	158	84	138	94	155	80
GTCTGCTGTGAGCTAG	alt_5874_new	35	52	36	24	53	39	44	31	63	25
AGTATGGGATTATGTT	alt_5874_new	10	14	13	10	19	7	13	7	31	12
CGCACCAGGTCCTTAA	alt_5874_new	11	13	14	12	14	3	14	10	11	7
GTATGTTGATGTCGCC	alt_5874_new	29	45	47	39	36	29	51	24	36	27
AATGATATTTTTTTTC	alt_5874_new	0	0	1	0	0	0	0	0	0	0
GTAAGATTATTCTTGT	alt_5874_new	28	35	34	29	33	36	62	27	44	31
TCAGAGTGTTGTTCGG	alt_5874_new	40	66	50	41	63	48	74	34	86	39
CACCGTGGTTGTCCGT	alt_5874_new	24	50	40	35	51	28	55	34	77	18
TGGTTACATGAATAGG	alt_5874_new	0	3	3	4	1	5	2	2	1	2
CACTTGTAAGTGAAAT	alt_5874_new	26	40	31	18	43	19	55	19	36	20
ATTATTCGGCTCGTTA	alt_5874_new	0	6	5	4	3	2	2	2	6	2
CCGCCAGCTTCTTTGT	alt_5874_new	5	5	4	2	3	5	1	2	3	1
AGAACCCCATTATTTT	alt_5874_new	28	46	27	19	38	24	31	16	37	14
GAGATACCCGGTCCGT	alt_5874_new	0	0	0	0	0	0	0	0	0	0
AAAAAATTTCCGTCTA	alt_5874_new	51	80	56	66	85	51	91	46	99	39
ATGTGAGTCAAATGAC	alt_5874_new	9	21	8	10	11	9	18	10	21	11
ATGCACTCAGAGCGGT	alt_5874_new	140	182	138	129	206	99	185	118	204	113
TACATAGAGACCAGGG	alt_5874_new	30	44	36	44	50	34	42	36	56	26
ACCCCTTTACGGCATT	alt_5874_new	26	52	17	25	49	21	48	28	51	18
GGTGGCATACGGCGGA	alt_5874_new	52	72	55	62	63	44	73	57	69	52
TTGAGGAAACCTGCGC	alt_5874_new	7	23	10	12	8	8	17	7	14	4
TAGGTCCAGCTGATTT	alt_5874_new	0	1	0	0	0	0	0	1	0	1
GTACTCCCCATTTCAA	alt_5874_new	0	9	1	0	10	0	5	1	7	0
CACGTTCTGGACGCTA	alt_5874_new	14	15	12	9	9	9	16	5	11	11
AGTTCAACGCGGTTTC	alt_5874_new	17	32	28	22	44	24	36	28	29	24
CTGAAGGCTTCACTTC	alt_5874_new	0	0	0	0	0	0	0	0	0	0
AACGTGAGACCTCGGG	alt_5874_new	8	14	10	11	15	15	16	15	16	10
TTGACGTAAAGTAGAA	alt_5874_new	52	55	70	54	74	61	65	48	69	46
AACTTCGGTCTCACGC	alt_5874_new	0	0	0	0	0	0	0	0	0	0
GGGTCGCATTTCACGG	alt_5874_new	51	72	45	47	68	34	67	43	76	45
AAGGTCTCAGGCTTAA	alt_5874_new	18	34	27	31	43	33	40	15	39	22
TCTCTAGTCCGTGCTC	alt_5874_new	0	0	0	0	0	0	0	0	0	0
TGCATTCGTCCTTTGA	alt_5874_new	0	0	0	0	0	0	0	0	0	0
TTTTAGGTTAATTATA	alt_5874_new	0	0	0	0	0	0	0	0	0	0
ATGTACGTCTTTTTCC	alt_5874_new	10	13	12	4	15	5	6	5	5	6
AGTTAATTGAGGTATC	alt_5874_new	6	8	9	12	11	12	6	8	18	11
AGGACTTTGAGCTATA	alt_5874_new	0	0	0	0	0	0	0	0	0	0
GTCGCGTCATCACGGT	alt_5874_new	36	46	36	32	54	26	49	35	36	32
TGGCTTTTACTCGTAT	alt_5874_new	0	0	0	0	0	0	0	0	0	0
ATGCGTCTCCTTTTAC	alt_5874_new	64	71	70	59	81	56	76	51	111	47
TACCTTTGTCGCGACC	alt_5874_new	11	20	9	10	12	6	20	12	20	7
AAACACTAAGACACAT	alt_5874_new	0	0	0	0	0	0	0	0	0	0
TTCGTACATTAATATG	alt_5874_new	0	0	0	0	0	0	0	0	0	0
CGCGATGTCGTCTCAT	alt_5874_new	29	52	36	29	31	24	42	23	39	23
TGTCTCTTTAAGTGGC	alt_5874_new	30	56	49	34	44	24	59	36	51	25
CGGTTTCGATATCACG	alt_5874_new	30	25	31	39	51	26	31	16	45	38
TTAATATAAGCAGCGC	alt_5874_new	0	0	0	0	0	0	0	0	0	0
CTCATGCATACTATGT	alt_5874_new	44	109	69	60	126	44	113	57	109	60
GACTTTGGCTGTCATC	alt_5874_new	12	10	6	12	8	5	16	5	8	7
TGTCCAGAGTGTTTCC	alt_5874_new	0	0	0	0	0	0	0	0	0	0
TGAGTGCTCCGCCGCT	alt_5874_new	10	11	11	7	8	3	14	6	8	7
CCCCTAGGTTCGGTTA	alt_5779_new	15	24	25	15	21	16	20	15	24	16
GTGAACTTTAGTAAGT	alt_5779_new	28	45	36	41	46	31	47	35	44	29
GCTTTTGCATCCTCGA	alt_5779_new	7	6	7	6	8	4	15	9	19	2
TCTGTTCCATCCTGGG	alt_5779_new	26	98	44	50	95	38	89	38	87	42
TGACCCAGACCCGAAT	alt_5779_new	47	90	56	62	74	59	100	49	101	57
ATTTTTACCGGGGAGA	alt_5779_new	28	41	20	18	43	30	45	26	46	24
AGTTCGGGCGATATTG	alt_5779_new	1	1	5	6	5	0	7	7	3	2
CCGTGATCTTTTCGTA	ref_5779_new	20	53	32	15	39	23	30	27	43	17
CATTTTCAGCGGCCCG	alt_5779_new	17	17	12	26	19	23	24	21	33	20
GGCTTATACAGTACGG	alt_5779_new	7	6	8	6	15	7	13	6	6	2
AATCAAGCATTATGTT	alt_5779_new	28	52	29	38	54	43	53	35	59	32
TATCAGTGATCTACAG	alt_5779_new	0	0	0	0	0	0	0	0	0	0
TCATACGGACGTTGGC	alt_5779_new	38	68	55	32	65	33	59	50	64	34
GCAGACTCGTGCACTT	alt_5779_new	68	133	96	76	165	71	135	67	145	61
AGTACGAAAAATCTGC	alt_5779_new	27	58	32	26	62	36	73	45	78	28
GCGTCCTGTGGGGCGT	alt_5779_new	19	21	9	9	33	8	25	15	30	15
GATCCTGCTATGAGGT	alt_5779_new	22	22	18	15	32	22	32	9	22	17
TAAGGGAAACTATCTG	alt_5779_new	9	8	3	5	11	8	23	3	10	7
CATTTGCCGTTGTTGT	ref_5779_new	64	99	72	49	115	54	93	77	105	53
CCCCTCAGTCCTTTAG	alt_5779_new	12	20	8	21	14	15	13	9	14	14
TCCGAGCATTGATGAC	alt_5779_new	27	34	47	30	56	33	51	25	48	30
TGTCCGGTCCGGGCGT	alt_5779_new	8	13	8	14	20	19	15	11	15	6
GTTCTTTCTCGACATT	alt_5779_new	19	28	25	25	31	31	27	21	24	14
GTAGCGTTTGAGAAGT	alt_5779_new	3	4	2	7	9	5	9	12	5	2
CGCGTATATAGATCGT	alt_5779_new	32	39	26	25	34	21	46	26	46	27
CTCCCTTCTCTTCCTA	alt_5779_new	7	108	13	7	117	6	83	1	102	4
CGTTCCGTGTCACTTC	alt_5779_new	1	8	2	4	12	2	4	0	11	4
TGCCGGTACGGAATGC	alt_5779_new	13	33	36	26	43	29	27	22	43	29
TCGGGCAGCTCGTTCA	alt_5779_new	22	34	35	17	39	34	41	28	52	28
TTTTTTTTCTTTCAGA	alt_5779_new	0	0	0	0	0	0	0	0	0	0
AAGCGTGAAAGTACCC	alt_5779_new	13	21	20	16	20	13	23	12	17	7
TGCCGGGTAAGAGCCA	alt_5779_new	7	14	9	18	11	7	22	15	17	12
CATTTCACGAGCTCCA	alt_5779_new	53	45	37	47	59	27	51	50	53	20
TTCATCATAACGGGCA	alt_5779_new	31	61	49	40	51	50	64	44	71	45
GCGAATTTCCACCAAT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
AGTAAAACAGGCCTCA	ref_5779_new	171	291	219	150	333	156	325	176	323	142
CAGTTACCACCCTGCG	ref_5779_new	44	79	54	49	110	54	78	38	111	42
ACTCGGTCGATTGACC	alt_5779_new	0	0	0	0	0	0	0	0	0	0
GGCCTATGTTACAGTC	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CATCGTTAACAGCGAG	alt_5779_new	4	14	6	5	13	8	16	4	8	2
GGCATCTCATGTATAT	alt_5779_new	22	26	22	11	25	15	29	10	46	12
GTTTGGAGCGAAGCCC	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CAGCTATTATAGCAAT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
ACCTTTGTTGAGGTAA	alt_5779_new	25	34	20	16	16	17	34	13	32	13
TGGCCCTTTTTACTTA	alt_5779_new	36	61	60	44	58	39	58	38	69	40
CCTCGGTCGTTTGGTC	alt_5779_new	53	114	74	68	117	49	129	58	136	50
AGTCAAGAAATTCCAA	alt_5779_new	40	81	77	48	90	52	87	58	100	55
CTCCTCTAAGCGACGA	alt_5779_new	16	23	20	11	18	23	34	15	28	15
TATCTGTGATCTACAG	alt_5779_new	155	268	201	153	281	146	302	124	322	144
GCAACATTACGACGCC	alt_5779_new	56	91	57	46	91	50	89	43	96	51
GGCTATATCTAATGTT	alt_5779_new	23	33	37	26	44	36	36	24	30	26
TCTACTGATCTGTTCG	alt_5779_new	26	52	20	19	43	18	41	21	52	21
GAAGGGGTTTCTGTCT	alt_5779_new	2	4	3	6	7	1	3	6	8	2
GGGGCGTCAGCATGAA	alt_5779_new	17	18	18	13	15	9	31	10	12	12
ACGTTGATGCTTAGCG	ref_5779_new	21	36	47	33	39	26	63	23	37	19
TCGTTCGGCGTAGGCA	alt_5779_new	45	39	51	39	58	43	63	35	69	24
CAGTTCTACAGGCGCT	alt_5779_new	27	40	28	27	37	18	39	24	44	26
CGCCAGCTAACCCTGC	alt_5779_new	10	32	11	12	34	14	30	7	36	8
TTTTGGAGTTTTAAAC	alt_5779_new	17	24	15	19	19	15	30	22	34	16
CCTCTTCCTACTATGA	alt_5779_new	17	14	13	18	20	7	22	17	13	8
GAGACCATGAATGTCT	alt_5779_new	23	38	14	22	35	18	29	16	32	20
AATTGCATGTCTTCCG	alt_5779_new	16	19	17	15	21	18	19	17	16	15
GTTACACCCTTTACTG	alt_5779_new	0	0	0	0	0	0	0	0	0	0
TCCACTGTAGTTATTA	alt_5779_new	13	27	22	10	32	12	32	10	21	16
TTCTCGGCTCTGATCC	alt_5779_new	20	42	27	25	34	28	43	17	37	21
CTCGGAACCACATGCC	alt_5779_new	24	52	29	25	48	27	38	24	29	24
TTTGGTGCTCCGGATA	alt_5779_new	58	102	67	78	83	65	94	65	117	67
AGCTGCTAGAACGCCT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
GGAATTTGGTGGCCTA	alt_5779_new	0	0	0	0	0	0	0	0	0	0
GTCAATTCTGGGGTGA	alt_5779_new	4	11	3	6	7	3	5	5	3	2
CGATTTGCGTTCATAT	alt_5779_new	19	37	19	14	26	15	29	11	36	21
CCCATTGTCACTAGGC	alt_5779_new	54	85	61	41	102	42	98	50	118	54
TTTGGATTTCGCCTTG	alt_5779_new	75	118	96	68	122	68	130	65	119	55
CTGCCTTACATATGAG	alt_5779_new	8	7	10	12	14	7	15	6	14	5
ATTTGTTTCTAATCTT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
GGGAAGCTTATCGGCT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CCTACTCTTTTGTTGG	alt_5779_new	0	0	0	0	0	0	0	0	0	0
GCATTTGACGACGCTC	alt_5779_new	74	107	80	72	115	73	129	57	116	78
AGTAATTCATACTCTC	alt_5779_new	6	30	11	15	47	8	36	8	43	8
CTCGAACCCGAACCCC	ref_5779_new	10	19	21	10	28	10	19	13	25	9
GTCAGTCGATAACACG	alt_5779_new	9	52	9	13	49	9	43	18	52	15
ATGTGATTTGGTATTT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
TTTATCAAGTCGATAT	alt_5779_new	3	5	5	5	4	3	3	3	6	7
CCAGCTCGGCGTTTTT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
GCCTGACAGTCCGTGG	alt_5779_new	13	19	13	9	14	9	25	18	21	8
CTGTTCTTTATAGCCT	alt_5779_new	9	33	9	12	23	12	32	12	26	5
TTAGACGGTTTAGCAT	alt_5779_new	3	18	13	7	12	7	13	9	18	8
TCTCAGACATAAGCGC	alt_5779_new	8	12	8	6	12	4	20	11	11	6
ATTATTGTCACTAAAG	alt_5779_new	19	22	18	11	24	8	32	14	24	9
TCTGTAATCCGACGTA	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CTAGTCGTTCATGTTA	alt_5779_new	3	8	7	1	5	6	13	5	17	1
TCGGAGGGGTTTACCG	alt_5779_new	164	321	198	199	325	171	319	192	347	174
CTCTTCATTCAACTAA	alt_5779_new	3	13	7	5	12	3	10	6	12	3
ACACTTCATTTTCTGT	alt_5779_new	35	34	29	33	45	30	51	29	37	30
ATATGCAAGGATCGGA	alt_5779_new	0	1	0	0	0	1	0	2	0	2
ACAGTATCCTCACGTT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CGGCTTGCTATATGTC	alt_5779_new	10	12	9	9	15	9	14	10	18	9
GTTACATAGTGGTGAC	alt_5779_new	20	34	35	23	48	28	40	27	40	17
CATAAAATAACCCCTT	alt_5779_new	21	33	25	28	38	23	22	30	34	21
CCCTGCACATGTACGT	alt_5779_new	50	85	60	38	85	43	90	43	97	54
CTACTGAGAGATTCTC	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CACCCTATGATTAAGA	alt_5779_new	11	15	8	12	19	9	10	9	25	8
GGCTGTATGGGCGTGT	ref_5779_new	11	22	25	12	19	17	38	14	30	12
GGGGTACCCCTGTAGG	alt_5779_new	0	0	0	0	0	0	0	0	0	0
AAACAGACGTGTCTAG	alt_5779_new	12	24	17	18	28	8	24	15	20	11
CACCACCGTTAGTTTG	alt_5779_new	8	24	15	10	34	7	26	15	19	12
GGTTTGAGGTTTGGTA	alt_5779_new	3	17	4	4	13	4	14	6	13	3
CTGCAGGTATTCGAGT	ref_5779_new	124	177	149	123	186	119	188	121	213	123
CATGCAGCCCTAACAT	alt_5779_new	60	90	40	52	82	48	75	45	117	52
CCCCATGCCTTCACTG	alt_5779_new	28	40	29	26	46	29	23	20	60	26
ACGGATGACTGCTAGG	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CTCGAACTATTCTATT	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CCCTTGGTATGTGCCC	alt_5779_new	10	8	6	4	18	4	13	13	17	2
TTTATTCCGGCATCGT	alt_5779_new	91	137	92	100	138	91	126	74	160	81
CATGTCAAGTAACCCA	alt_5779_new	30	50	36	24	46	18	47	29	39	21
GGTTCATGTGCTTATT	alt_5779_new	9	19	8	8	9	10	16	3	16	6
CAACAGTACATTGCTC	alt_5779_new	0	0	0	0	0	0	0	0	0	0
TGGTATAGCCCTGGCG	alt_5779_new	0	0	0	0	0	0	0	0	0	0
CCCCCCACGAGGCGTT	alt_5779_new	20	46	30	39	41	23	40	14	55	22
TTGGTAAAATCTGCAG	alt_5779_new	13	24	19	13	21	16	31	12	19	12
TGTTACGGCGCCGCCG	alt_5779_new	0	0	0	0	0	0	0	0	0	0
TGTATTTTACATACGT	alt_5779_new	7	16	5	5	17	6	9	7	15	2
GTGTTCTTCCAGGTGA	alt_5019_reverse	47	41	48	53	33	37	43	35	50	34
CCACTGACAATAACGT	alt_5019_reverse	24	12	11	19	15	18	10	23	19	9
AGCCGGTGGATTCTGC	alt_5019_reverse	24	32	29	22	25	25	18	31	35	17
CTACGTGGTCTAAATA	alt_5019_reverse	67	86	59	68	105	55	84	61	105	50
CTATCGGCTAAATGGT	alt_5019_reverse	44	61	55	56	78	43	72	53	71	34
ATTGTTCCTGCTTGTT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
GCTCATTTCTCGGCCC	alt_5019_reverse	7	9	6	5	10	13	7	11	10	5
TTTTGCCCGTTTCGGA	alt_5019_reverse	94	94	127	95	100	100	112	101	128	105
GGCTCGGTTGCGTCGG	alt_5019_reverse	34	30	31	31	30	28	36	21	39	33
TGCCGTTTAGTCCACT	alt_5019_reverse	73	105	94	82	87	65	89	75	106	69
AAGCTCACAACGTGCA	alt_5019_reverse	21	25	30	30	36	19	58	34	36	19
TTTCGACTCGTAATTC	alt_5019_reverse	112	96	116	73	111	95	80	85	112	81
ACGATTGGTACTTGCG	alt_5019_reverse	85	72	99	80	94	89	92	90	92	69
TCAATAGATGCGACCG	alt_5019_reverse	44	54	57	38	44	44	54	35	65	39
AATTAGTTGCGCTTCG	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTCTCCAGCCTAC	alt_5019_reverse	20	31	43	44	32	44	21	26	36	28
TGAGGGTCTCTGTGCA	alt_5019_reverse	14	7	14	11	12	9	11	11	12	7
TGTAGGACAGTGGTTA	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCAGACTGACTCTCCA	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TGAATGACCAGATTTA	alt_5019_reverse	106	108	156	125	128	118	121	113	131	108
GGTGGGGCCCTGAGTC	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
AAATCGCGCTTGTCTT	alt_5019_reverse	45	35	40	40	35	41	38	34	48	40
GTGTGTCAACTGATAA	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
CATCTCCTGCCAACTT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGTAGGTTCGTTG	alt_5019_reverse	5	2	3	6	2	2	4	5	5	0
TGCCTGCGGCTTCTCT	alt_5019_reverse	23	27	33	28	21	25	34	13	37	20
CAACCCAAGATTTCGG	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCTCGTCCTCTCG	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGGTTTCGTTTTT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCCACTTGGTGAA	alt_5019_reverse	7	10	15	11	16	20	12	13	23	9
TTTCCGTCCGATCGGT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
CTATTTTCCAGTTTCT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
AGCATCAGCTGACTCC	alt_5019_reverse	56	56	50	43	59	51	64	39	48	46
GTGTTAACTGTCATCG	alt_5019_reverse	37	58	48	43	65	49	59	22	65	35
GATGCATTGGATGTGT	alt_5019_reverse	142	169	182	150	178	163	193	148	208	152
TGCTCACCTTCCCAGT	alt_5019_reverse	24	29	23	22	35	22	35	24	38	24
TTTTATACTGTGTGCG	alt_5019_reverse	33	41	47	27	53	34	44	42	56	36
TTCGTACCGGCTGTGT	alt_5019_reverse	34	35	35	50	34	37	35	41	33	26
AGAGCCCCATTGTACC	alt_5019_reverse	28	32	45	30	36	33	27	37	42	32
CTATGCGAATGCCACG	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCTTAAGAGGTT	alt_5019_reverse	26	21	33	33	32	16	30	13	35	11
TCGATCGTCTAGAACA	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCGGAATATTTCTTAG	alt_5019_reverse	36	26	51	32	33	40	45	35	31	35
TATTCCATTCCGGGTG	alt_5019_reverse	27	26	22	29	25	23	29	23	25	18
CCCTCATCGTCCGGCA	alt_5019_reverse	24	18	21	32	19	25	27	22	29	16
GTTTCATCGCATGCCA	alt_5019_reverse	38	41	51	50	61	52	39	46	39	49
GATATGGCCCTCTCCT	alt_5019_reverse	23	33	25	20	28	13	22	17	28	24
ATGGCCTGAGCGGACT	alt_5019_reverse	12	19	11	13	12	10	10	9	13	20
CCGTTGATTCATGAGA	alt_5019_reverse	11	22	15	10	14	18	22	6	20	13
CTAACGTCGATCGGAA	alt_5019_reverse	25	21	19	31	20	27	23	23	29	25
TTCTGCCGCCACCTAT	alt_5019_reverse	48	35	54	60	41	38	46	37	48	42
TGCATCCGGTTCCACG	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGGTTTTTGATGC	alt_5019_reverse	42	45	45	44	47	27	41	45	35	27
GCGTAGGTACCGTTCT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCTTATGTTAGTCTCC	alt_5019_reverse	10	6	9	10	8	11	15	8	16	11
GCCCGCCAAATAAGGG	alt_5019_reverse	129	120	147	111	110	107	101	94	98	94
TCTCGTCAATCGGTCG	alt_5019_reverse	77	52	87	64	75	60	73	60	58	72
TCGCCTGCGGGATCAG	alt_5019_reverse	49	64	51	46	61	44	68	44	63	39
ACTGGATTTAGTATAT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TGATGTGTGGTCTTAG	alt_5019_reverse	36	38	29	29	47	29	26	27	35	27
TATAGGGATGAGACTG	alt_5019_reverse	46	54	48	53	52	41	53	42	57	51
TAGATGTACGGTGGTT	alt_5019_reverse	55	64	60	71	42	53	71	64	69	39
ACCTGTTCCACTATCA	alt_5019_reverse	11	5	7	6	8	13	3	7	7	3
CAGAATTTGAAACGAT	alt_5019_reverse	10	15	16	12	11	19	15	13	12	9
GAGCGATAAACTGTTT	alt_5019_reverse	41	30	37	28	22	27	21	34	39	21
ATATCTGTGGTACAAT	alt_5019_reverse	5	7	9	11	13	4	10	3	14	8
ATTCACGTTCATCGAA	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAGCTAGATTTTG	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTGTGTACCAAAA	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCCCATATTCGGT	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGAGCAGTTGTAT	alt_5019_reverse	4	10	4	10	8	2	7	2	4	3
TCATAATCGTAATGGG	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
GGACCCCTGTTTTAAT	alt_5019_reverse	15	24	12	19	12	20	17	11	17	13
ACCCAAAACAGCAATG	alt_5019_reverse	14	16	21	26	23	19	10	13	20	18
ATGGAAAGCTAGACAA	alt_5019_reverse	8	7	4	4	3	7	11	6	9	8
CGCGTTCACGTCCCTG	alt_5019_reverse	54	61	53	50	48	51	59	42	45	46
CCGTGTGTGGACCGGA	alt_5019_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTGGCGTGGTTAA	ref_2208_upstream	11	12	8	3	10	6	18	6	14	5
AATCAGGGCGTGAACA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AACAAGTTAGGTTGCG	ref_2208_upstream	10	16	14	10	18	12	15	13	22	12
ATGTTAAGGGTAATCG	ref_2208_upstream	0	1	1	0	0	0	2	1	2	1
TGGTTGCTTAACGAAA	ref_2208_upstream	8	6	6	2	3	5	2	2	6	5
GACCCGTCGTCATGAT	ref_2208_upstream	47	80	57	50	102	51	84	38	105	41
AAGCTGGGATTGCCTA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTTTACGGTTACA	ref_2208_upstream	10	4	7	6	7	7	4	7	5	5
TCTGTGTTAACCCCAC	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AACAGGTGCAACTCTT	ref_2208_upstream	2	19	8	7	15	11	24	7	10	6
TGGCTAACAACTGATC	ref_2208_upstream	134	140	133	122	168	130	181	98	150	100
AATTGCGTTTTTCTTC	ref_2208_upstream	7	7	14	8	5	8	6	6	4	7
CTAGCCGCTTATTCTC	ref_2208_upstream	1	0	3	3	2	0	1	0	3	1
TTTTTCCGTAAGGTCG	ref_2208_upstream	42	46	54	27	43	50	49	30	48	30
CCCTATATGGAGCTCC	ref_2208_upstream	12	10	15	10	17	18	15	15	18	8
GACCCTTTGGGCTCCT	ref_2208_upstream	9	16	16	8	31	16	25	11	22	7
TACTTTTTCATTGTTG	ref_2208_upstream	34	44	27	32	53	23	38	25	55	25
TCACCGTCTCTCGCCT	ref_2208_upstream	27	70	35	30	76	24	86	28	76	28
ATGAACCTCCCGTTAA	ref_2208_upstream	26	26	20	27	17	16	35	22	29	12
TATACGTATCTTGTGG	ref_2208_upstream	15	34	27	25	35	20	28	22	24	14
ATCGCTTGCTTGCGCA	ref_2208_upstream	41	56	43	32	51	38	60	28	48	29
TGCTCTCGGACTTGCT	ref_2208_upstream	15	8	6	12	8	6	6	10	12	10
ATATTGTTATTTCATT	ref_2208_upstream	42	43	47	42	40	42	44	28	53	35
CTCTGGTCTTCCTAAG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTTAATGCAATGCATG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AACTTTGCTCTGATTC	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGTAATCGTCAAAAAC	ref_2208_upstream	4	4	2	1	4	1	3	4	7	1
TGCTCGATCTCCCGCG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AAATTTGTGTGTCCCT	ref_2208_upstream	12	15	14	14	11	6	16	12	9	13
TGCCTCTTCGATGCCC	ref_2208_upstream	20	36	37	20	41	31	34	20	47	18
CGTTAGGTTTGTGCGC	ref_2208_upstream	55	90	72	73	101	70	99	52	94	38
TCGGATCCCAAGACAT	ref_2208_upstream	18	17	18	20	16	14	31	20	30	14
GTTACCGCTGTTCAAT	ref_2208_upstream	121	174	163	131	186	124	168	123	157	119
CTAGACGCCTAAAGCG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
GCTAAAACCCTTTGTA	ref_2208_upstream	22	46	38	22	36	18	45	26	68	30
GTCATGTTTGTGCTAT	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TACAGCCCGAGTCTAC	ref_2208_upstream	101	189	115	122	222	110	204	95	219	84
CTTTCAAAATCAGAGA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTCTAGTGACAG	ref_2208_upstream	23	39	36	30	33	37	49	22	39	31
TTATCTGATCACTTCG	ref_2208_upstream	10	24	19	12	10	11	15	13	31	12
TCTGTAAGTTACCAGA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CTACTCCACATATCCG	ref_2208_upstream	16	14	23	15	14	22	13	18	28	15
ATTACGTTCGTTCCTT	ref_2208_upstream	22	37	28	23	27	24	25	27	29	21
ATAACTATCCTATATC	ref_2208_upstream	54	54	52	45	60	35	51	36	59	37
TGGCCTGCAGCTAACT	ref_2208_upstream	30	36	48	51	50	39	40	38	60	47
GAGAATCCATGAATCG	ref_2208_upstream	50	38	43	45	52	40	62	33	55	34
GAGAATGATTAGCACC	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CTATTAGTGATTCAGT	ref_2208_upstream	25	36	38	15	38	16	44	23	46	9
GTGTATAGACAGCATA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCCGGTGAATTTG	ref_2208_upstream	5	34	9	4	27	9	19	6	34	5
TGCTCTGTTCGCCCCC	ref_2208_upstream	37	70	40	46	57	41	68	31	72	42
CAATACTCGCAAGGGT	ref_2208_upstream	8	21	19	16	15	13	18	8	12	8
ATTACACGCCTAGGTA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AACTTTGCTCTGCTTC	ref_2208_upstream	143	216	185	159	186	141	207	127	221	129
TCTTTATTAAGTCCGT	ref_2208_upstream	15	17	13	11	15	20	20	6	21	14
TTGCCTTTAACTGCAG	ref_2208_upstream	22	38	30	18	32	22	24	29	49	21
TATTGGCCAAAATTGT	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGTAACCTACCAGGTT	ref_2208_upstream	25	37	26	16	26	30	32	27	29	20
GGCACACGGTATCCGA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCCTACGTTTTTCACG	ref_2208_upstream	50	73	52	36	60	34	67	50	58	52
TCTCTCTGGGAGTAAA	ref_2208_upstream	5	3	0	1	1	1	3	1	3	1
CTCGTCTGCTGCTATT	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AATCTTCGCTTTCGCT	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTGCGCCCCATAT	ref_2208_upstream	36	71	28	79	54	43	86	35	70	44
CTCTTGGTGCGCTTGC	ref_2208_upstream	8	46	13	10	55	8	44	6	48	14
TTTCCAAGATCTGCAC	ref_2208_upstream	8	9	10	9	10	16	4	6	8	4
CGCCCCGCCCCTACTC	ref_2208_upstream	9	20	16	9	25	15	21	18	28	19
ACTTTTTTAAATACTG	ref_2208_upstream	12	37	27	21	28	19	32	29	45	27
GTACACATTGAGCGTA	ref_2208_upstream	17	10	14	7	15	12	15	10	29	18
GTGAGTCCGAATTGTT	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AAATATTTCACCGCGC	ref_2208_upstream	28	44	35	29	54	36	33	27	39	44
TCGTTATTGCTTAGTG	ref_2208_upstream	0	1	2	0	1	1	0	1	4	0
TTCTAATGTACTTTTT	ref_2208_upstream	77	108	102	80	139	69	96	66	123	62
CTCGCGGACTACTAAC	ref_2208_upstream	18	24	26	19	24	22	34	32	32	17
CCGTGTGTTCTATAAC	ref_2208_upstream	76	68	78	62	120	57	108	65	97	84
TTTTAGTTCTAGGCTT	ref_2208_upstream	28	48	39	26	44	27	49	33	32	28
TGACGTCTTAATCACG	ref_2208_upstream	22	29	28	19	26	22	37	16	54	37
CTGCAAACTGTCCGAG	ref_2208_upstream	51	69	50	30	57	26	61	35	57	20
AATATCGGCTTCGACT	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGTAGACAGCATA	ref_2208_upstream	9	27	19	17	34	17	24	15	23	26
TTTTTAGTAGTAGTAT	ref_2208_upstream	13	16	15	12	18	20	8	10	26	17
GTCAGACCATGCTTTC	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCATTCTCTCGATTTA	ref_2208_upstream	76	82	87	62	71	63	93	62	81	58
CTCAATGCCGGATGAT	ref_2208_upstream	15	28	14	10	20	15	25	17	24	14
TGTGTTCCCCACTATC	ref_2208_upstream	12	42	24	19	34	31	51	20	38	19
AACAGTGGTTTCTCCC	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
GTGCACCGCAAGTCAA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCACAACCTTTAACGA	ref_2208_upstream	6	4	10	3	5	2	10	4	8	2
GTGACAGACAAGGCCC	ref_2208_upstream	33	44	43	39	46	44	52	37	50	38
CGCGACCATTTGCCGG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGAGCCCGAAATG	ref_2208_upstream	26	38	40	37	40	28	69	41	46	19
GCTTCATTCCCTAGTG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGGGCTAGAAAGA	ref_2208_upstream	52	59	44	43	48	37	55	40	63	31
ATTTATTAACTCGAAG	ref_2208_upstream	1	2	5	6	4	1	5	4	5	2
GAGCTACACGGTCATC	alt_2208_upstream	18	30	28	27	28	26	36	21	34	14
GGTGCCACTTCAGATT	ref_2208_upstream	26	39	36	32	37	27	31	29	35	22
CCGTTTGGTGGTTTTT	ref_2208_upstream	11	47	11	21	49	17	37	12	52	11
ATACACGCTCCTTCCG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CTGACCAGTCTAGAAC	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
GGTATCGACATGTACA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TATTTACGTCGATAGT	ref_2208_upstream	9	12	9	11	16	8	15	5	19	10
TGCTGCTGTGCGACCA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGGCCACATCCCA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCATCTTGGTTAAGGG	ref_2208_upstream	40	47	46	42	58	29	47	35	56	23
CATACTTGAGCAGTTT	ref_2208_upstream	21	22	29	13	20	14	26	18	33	25
CCTATCTGTATCTGAG	ref_2208_upstream	9	15	17	8	17	4	17	5	11	4
ACGCTTCTATCAAAAA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CAGACGGATTATCTGT	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGCGCTGTCACTG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CGTAGACCTTGACTTG	ref_2208_upstream	11	60	20	18	58	5	52	10	66	8
GATATCGGATGTTTTG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
AAGGCATTGGTTGTTA	ref_2208_upstream	8	12	8	7	9	7	15	5	5	10
TACGTACACTCCCGTG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
CTATGTGGCTATGCCC	ref_2208_upstream	14	12	16	15	14	6	13	10	22	11
CGTACTCTCGAAATAG	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
ACAGCATAAGATCTAA	ref_2208_upstream	112	154	159	107	150	99	175	107	165	113
TTCGAGCGCTGTAATA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTGCCCGTTCTAC	ref_2208_upstream	3	8	13	5	7	7	6	12	13	10
ACTTGTTGGCTACTGG	ref_2208_upstream	48	66	39	40	52	48	50	35	62	29
GGTTGCTTATATTTTT	ref_2208_upstream	10	11	7	11	13	8	15	6	21	10
AAATTGCCTTGGACTA	ref_2208_upstream	48	83	57	49	72	47	76	57	72	50
TACTAATTAACTGTGT	ref_2208_upstream	23	67	34	21	36	32	76	21	65	24
ACTCCCGTTACTATAG	ref_2208_upstream	6	7	4	4	24	4	21	3	15	4
AATAAACTCAAATGAA	ref_2208_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGGGAGAGTCACG	alt_6072_new	4	6	4	3	4	6	15	7	11	2
TCATACCCACTGTAGC	alt_6072_new	12	29	9	13	27	7	16	7	20	16
AGCGTGTGCATGCTTG	ref_6072_new	49	70	53	47	71	49	69	58	77	32
CGCCACATTTAATGGA	alt_6072_new	11	12	18	16	19	11	21	10	22	8
ACTTCTCTATCTTAAG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTCCTTGCTGTTCGGC	alt_6072_new	18	34	16	12	30	28	25	10	29	19
TAGGGTCAAAAGAAAT	alt_6072_new	4	12	5	3	8	6	13	10	12	9
CGAGCCGCCAACCTAG	alt_6072_new	9	21	5	5	17	9	26	6	31	10
AATCTCTCTTCGTGTA	alt_6072_new	187	260	213	208	244	179	267	171	260	167
GTAATCTGTCTTGTCT	alt_6072_new	30	74	42	36	58	45	57	49	89	30
GGTACTGTGCTTGGCG	alt_6072_new	26	69	25	26	80	28	86	33	61	27
GGGTATCTGTGTATAA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GCCTCGCACACGACAT	alt_6072_new	6	6	7	3	7	2	2	3	6	8
CTCATACTGACGTGAT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GTTATAGACTGGCGAT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CTTGCCCTCTTGTGGG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
AAGATCAATAGAGAGA	alt_6072_new	9	11	6	12	13	14	13	8	10	17
TAGACTGTTAGCACGC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TGTTTCCGTTGGGCGT	alt_6072_new	10	10	11	15	17	8	24	8	19	4
TAGGTACCACCCTATG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTCTACTCGCATTTTA	alt_6072_new	21	44	26	20	32	22	32	15	50	20
GTTATACGACCAGATA	alt_6072_new	30	37	41	25	42	27	46	25	48	19
CGGTATGTTATGTCCG	alt_6072_new	12	12	6	17	9	3	19	7	12	13
TTATGGTAACTGCTTA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ATTAGATCATTCGTCG	alt_6072_new	14	24	22	15	35	13	31	12	25	13
GTCACGTGTAATCAAG	alt_6072_new	119	151	126	104	161	87	139	87	175	90
ATCACACCGAACGTGA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ATCAATACCCAGACCA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CAATCAGCATTGAAGA	alt_6072_new	53	95	65	48	96	52	93	66	106	57
GTTGGGACGTCTGCCT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
AACAGATCCTAGAGTT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTCATGCCTTATCTTC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ATGGCAGTGAAATTTA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GCGAGGAAAGTCAGAT	alt_6072_new	48	61	47	28	43	43	58	34	64	28
CCCATGTTTGTCTGGC	alt_6072_new	9	18	15	14	23	16	20	9	14	7
TCACTTCACTCGCGGA	alt_6072_new	41	70	49	32	91	45	95	38	59	48
TTCGTGGTAAGAATAG	alt_6072_new	13	26	26	25	32	19	28	15	28	18
CGTTCTCTTATTAGTC	alt_6072_new	23	29	41	27	27	22	37	25	38	25
TACGTTCAATTGGACT	alt_6072_new	10	20	5	6	13	8	28	22	20	4
GTTGGTGATGTTACGA	alt_6072_new	9	13	4	7	18	4	16	1	10	11
CCAAGGGGTCCAACAG	alt_6072_new	9	17	10	4	17	6	13	2	18	11
TCTACTTGTGACTATT	alt_6072_new	27	60	47	33	70	35	71	41	70	33
ATCGCCAGTAGGACGC	alt_6072_new	6	3	6	8	12	4	9	6	5	6
TTACCGCATTGTTTGA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CTTTCTGAGGACCGGT	alt_6072_new	42	66	56	42	63	39	53	31	54	36
TTTCTGTTATTAAGCA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GACTTTTCCCGCAATT	alt_6072_new	67	80	71	65	89	65	93	55	78	55
TGTATGGTGGTTAATG	ref_6072_new	16	42	25	26	29	35	38	17	30	19
TTGTTATTATTTAGCT	alt_6072_new	117	162	142	110	169	109	141	95	179	86
GTTGAAGCTTTTACGC	alt_6072_new	20	51	34	32	48	33	50	28	37	31
GCTGAATGCGAGACCA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GCAAAACATCTATAGC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTAAGGCAACCTTACA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TCCGTAATCGGTACAA	alt_6072_new	2	6	6	4	9	5	5	0	5	2
TTTAATAAAGTCAAGG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ATTAAGTTGAAGGTAA	alt_6072_new	1	3	2	1	1	0	0	0	1	3
AAGGACGAAGCATATG	alt_6072_new	21	35	22	20	17	19	16	15	33	11
GGCGTTAAGGCTCACC	alt_6072_new	0	3	0	0	0	1	4	0	2	2
CGAGGTAAAATCCTGA	ref_6072_new	14	8	3	7	19	11	13	6	15	6
GGACATCTCTAACTTT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTCTTAGAAGAAACAC	alt_6072_new	48	70	33	46	68	38	55	36	66	44
TTTACGTCTTCAGCTG	alt_6072_new	16	35	12	10	18	8	16	12	26	9
AAGTACCAGTAAAACT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GGTTCATCATGGACTA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GTAGGTCGAAAGGTTC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TACACTGAGGCATGGG	alt_6072_new	58	89	72	54	96	65	104	61	109	49
TATATATCACCATTGA	alt_6072_new	41	64	49	35	61	48	72	40	71	45
TCATACCCACTGTAGT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
AATCCTACGGTCACAA	alt_6072_new	67	99	110	72	97	63	111	57	103	75
CCAATACATCTGTAAA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CGAGCACGAGTAAAGA	ref_6072_new	49	59	52	34	57	19	71	28	69	36
GTTTGCCTTTTTCGAT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTTCCCTTCGCCCAAA	alt_6072_new	12	34	19	12	25	15	30	13	24	10
AGGTAGAAATCTTCAA	alt_6072_new	49	57	62	41	73	42	82	48	60	31
ACCATCTGAGTCCCGC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CCGAATGTTCTCGTAT	alt_6072_new	18	39	32	14	34	11	41	22	30	19
GTGCTAACTCATCCAA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ACGAGAGGGCTCGCGT	alt_6072_new	4	13	13	7	13	4	16	2	9	6
CGCTAGCATTGAATTA	alt_6072_new	28	45	38	41	60	37	72	33	53	44
CCTTTTTGGCTGTATA	alt_6072_new	26	33	23	20	24	26	29	19	31	15
CTACTTGGGGAGTCTA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTTATCGACGTTAGCC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTAGGTTAACGGCGGC	alt_6072_new	84	140	121	96	146	105	163	99	170	84
TGTACTAACGGTCGTA	alt_6072_new	14	15	10	4	12	9	17	8	25	8
AAATACGGTATTCGGT	alt_6072_new	21	31	14	22	38	28	37	20	27	26
GTCTGCTTATTATAGG	alt_6072_new	30	56	58	46	57	33	56	39	37	28
GGAACTGTAGTCGGAA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTATCTGCAAAATCGT	alt_6072_new	1	3	4	0	4	4	2	0	5	3
TATGTCGATTCAATTC	alt_6072_new	15	25	17	9	18	5	17	9	20	10
TTTTACGTGATAACAA	alt_6072_new	29	53	41	33	49	29	68	31	68	35
CATAGTACAAACAGTA	alt_6072_new	61	68	64	42	81	32	65	36	100	50
CCTACTGGTACTCGAG	alt_6072_new	30	43	32	27	43	19	37	24	54	16
GTTCATTGTTAAGGAA	ref_6072_new	44	57	57	60	72	36	68	47	62	44
GTAATTGTGCAAGCTA	alt_6072_new	36	61	52	44	71	23	83	34	55	48
ATGATTTTCTCGTAGC	alt_6072_new	7	10	7	12	15	10	21	6	11	5
TTTGGTAGTTTGTGCC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
AGTCGCAGTCCTCTGC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TGTGCGGACCACACCT	alt_6072_new	6	8	1	3	11	2	5	2	11	1
TTGAAGACAACAATTG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TCAATAAGTACGGCTT	ref_6072_new	12	34	29	31	37	24	30	30	33	27
CGGCTACTTCGACCAG	ref_6072_new	58	87	79	64	95	72	79	68	108	87
TGCATGCTCTGGACCT	alt_6072_new	3	6	4	2	10	2	11	3	9	6
CGCTGTTTGTAGTAAT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GCAATTTCCGCTGTTC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CCTATATAATTGCGAC	alt_6072_new	6	13	5	4	9	4	12	8	10	4
TGTATTGGACTGTGCG	ref_6072_new	13	27	13	7	23	12	36	10	25	14
GCGCTTGGGGAGGTTA	alt_6072_new	26	48	33	27	29	26	47	22	48	15
TCCCTGTCCTATTCAT	alt_6072_new	19	23	20	17	22	23	44	6	31	12
CCGGAGTAAGTCTTTA	alt_6072_new	1	17	9	12	18	5	10	9	13	11
CATCTCGAGCTGGTAT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GGAGCTTATTCCGCTT	alt_6072_new	27	35	41	14	39	13	38	28	48	22
TTGTCCCCGATTGAGA	alt_6072_new	11	21	15	6	30	26	32	18	35	9
ACCGTATTCATCGGCT	alt_6072_new	5	6	6	0	2	4	4	3	3	1
AAGGTCGCTTGCGTGG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ACGGCACAATGTAAGG	alt_6072_new	9	10	16	8	17	9	17	8	14	5
AATCGGTGGACGTCCT	alt_6072_new	56	55	71	83	62	69	73	56	70	67
GGTAGAGTATTACTCA	alt_6072_new	32	53	35	23	48	47	48	34	54	24
AGATAATCGGGTCAAG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
GCGCCCAGATACATCT	alt_6072_new	13	30	20	21	30	17	16	16	20	15
CCGACTGTCAGACATC	alt_6072_new	7	18	8	15	14	12	13	3	29	9
TCCTCTGAGCGCTTAT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CTTAGCAGTACGCTTT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CCGTGGACCCTTTGCT	alt_6072_new	2	8	1	3	6	3	4	7	4	7
AGCTCTTGGCGCGACG	alt_6072_new	6	26	17	22	16	8	33	6	27	13
ATTTGGCCTCGATGGA	alt_6072_new	7	9	6	11	4	8	11	5	5	3
GTATGCGGTATGTGTC	alt_6072_new	11	20	8	11	26	2	18	7	14	8
ACGGTCTGAATTAGTT	alt_6072_new	16	46	20	27	45	14	46	18	39	17
CGGGTGTCAACTATTT	ref_6072_new	25	36	42	19	44	16	55	18	39	19
AATGATTGTATTCGTA	alt_6072_new	28	40	45	32	51	34	45	24	52	26
ATTTATGTGCGAGAGA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TCACAACAGCTCGGTC	alt_6072_new	16	23	25	14	16	13	22	17	24	18
TCGTGCTTCGCTCTAC	alt_6072_new	9	34	18	22	36	11	33	12	34	13
CTTCTTCTGGATGGGA	alt_6072_new	1	1	0	0	0	0	0	0	0	0
TGGTCTCTTTACTGTT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TCATTTCTCCCTTGAG	alt_6072_new	32	56	38	50	56	43	70	31	68	38
GTGCGGTAATAACCTC	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ATACGCATCATGTCAT	alt_6072_new	14	16	16	9	19	13	25	16	20	10
GTTATTGCTTTCCCCA	alt_6072_new	3	13	10	6	11	5	7	6	15	7
AACTTTGCCACGCGGC	alt_6072_new	6	1	5	2	3	2	2	0	2	1
CCCATGGCTTTTGATG	alt_6072_new	0	2	0	0	1	2	2	1	4	3
TGAACTCTTCAAGTAC	alt_6072_new	16	68	41	22	89	13	81	18	98	14
TGTAAACCCCTCAGCC	alt_6072_new	37	67	40	60	66	53	72	51	70	36
CATGTTTCGTAATCGC	alt_6072_new	16	27	14	16	27	15	24	10	31	16
TTATGTCCTCCTTATT	alt_6072_new	6	10	17	7	14	10	12	6	17	5
AGCCATTCTTAGCAGC	alt_6072_new	22	54	33	28	57	28	62	26	69	32
TTCGATCTGGATTTTA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
CTAATGTCTACCTAGA	alt_6072_new	0	0	0	0	0	0	0	0	0	0
ACAATGTCTCAGAGTT	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTAGCTCGACCTGAGC	alt_6072_new	15	23	11	19	26	16	29	15	29	16
TTTATATACTAGGAAA	alt_6072_new	15	21	6	19	10	11	26	10	24	17
TATCGCAGTGCTGCTT	alt_6072_new	6	13	15	16	25	15	23	7	21	13
GCAGGATTTCAGCAAG	alt_6072_new	0	0	0	0	0	0	0	0	0	0
TTCGTCGCATAACAGT	alt_2132_negative	132	35	131	78	52	111	33	97	42	102
TTTAATGTTTTAGATA	alt_2132_negative	185	78	226	123	49	164	71	134	62	157
ACGTATTAGTTTGGTG	alt_2132_negative	64	33	77	49	25	63	21	51	36	69
GTTTACTTCTCCGCGC	alt_2132_negative	240	94	270	208	68	181	76	177	74	216
CGCCGCCCCCTACCGT	alt_2132_negative	0	0	0	0	0	0	0	0	0	1
GCGGACTTCGTATCCC	alt_2132_negative	926	249	957	609	272	821	263	742	259	837
AACAGCGATCACTCGG	alt_2132_negative	93	38	96	59	29	94	23	82	35	84
TGGGCCCGACAGTGAA	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
ACATCCTTTTGTAGCC	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
GATTCCTTTTGTCGTC	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
ACTGTCCCTCGTTATT	alt_2132_negative	112	34	114	62	27	100	46	95	51	108
ATGGTACTTTCGTGAT	alt_2132_negative	43	6	63	41	18	45	10	33	22	41
ATGTATAAGCCTCTGT	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
CTTTCTCAGCAAAACG	alt_2132_negative	37	36	52	30	46	39	56	40	40	34
GTGAAGTACGCTGGTA	alt_2132_negative	360	95	426	244	111	328	101	318	101	298
TGACATCACTTTCGTG	alt_2132_negative	14	16	32	13	8	16	11	17	12	22
CACTTGCAATTCGGTA	alt_2132_negative	48	8	50	26	10	30	19	31	8	41
CAGCGTTAGACTGCGC	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
ATGCCATTACATGCAC	alt_2132_negative	47	12	49	35	14	39	8	40	19	41
AAAGGTGCGGACCAAT	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
GTCGATATTGAGTACC	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
TTCACCGGATATCCTG	alt_2132_negative	215	317	263	168	274	195	330	206	331	189
GACTCCCGTGCCATCC	alt_2132_negative	118	29	119	74	51	93	34	88	41	99
ACACCGTGGTAGGTAG	alt_2132_negative	342	93	390	288	114	330	124	266	122	353
GTCTTACATGGGAACT	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
CCTCGCATGTTCTCAG	alt_2132_negative	80	33	69	55	32	57	38	52	22	65
CAGTTCCATAACGTGC	alt_2132_negative	93	22	96	52	31	65	12	45	21	68
ACTTGCTAGGTGGCGT	alt_2132_negative	159	40	192	116	61	154	43	133	50	155
TCTGGGTAACACTTGC	alt_2132_negative	64	17	64	51	25	61	25	48	16	61
TCCGCGTTAAATTCTT	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
CAGGGATTCGCAGGGA	alt_2132_negative	318	112	395	254	115	323	102	319	106	344
CGGTGCCGTTTTGGGG	alt_2132_negative	161	57	141	98	34	133	53	123	53	125
CCTCATACCCACCTCT	alt_2132_negative	18	3	16	13	2	5	5	7	9	11
GTAGAGCTCTGCATTG	alt_2132_negative	400	146	459	313	135	407	144	381	153	399
TCTGCAACGTAGGCTG	alt_2132_negative	215	90	304	180	70	210	75	213	90	269
TTCGTTAACTGGAAAG	alt_2132_negative	817	232	870	557	232	693	239	643	278	710
TTGTGTGCTGATGCGC	alt_2132_negative	154	50	173	93	55	151	44	123	45	169
TGCGGGATTGCCCCTT	alt_2132_negative	112	41	120	73	33	101	39	83	41	97
TTTGACCATAGCTGGT	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
GTCCCCGACTCGTGCC	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
CTGCCGGCTCGCGCAT	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
AATTACGCTTTCGTGC	alt_2132_negative	216	53	266	143	63	194	62	163	101	228
TAGGGAGCAATTAGCC	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
ATCCTAGAAGGTAAAA	alt_2132_negative	25	34	31	21	27	18	16	20	33	20
CAACATCTCCCAAGGG	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
GGGACAAATGAGAAGG	alt_2132_negative	190	60	195	125	76	168	54	181	62	177
CTGTTTTGGAATTGGT	alt_2132_negative	66	32	88	52	42	63	29	53	26	53
TTTGCGACCTGTTTAG	alt_2132_negative	128	49	128	79	27	86	39	81	32	115
TTCACGATCGATGTGA	alt_2132_negative	319	92	288	216	83	265	79	218	96	254
CGGGAGCTATAACATA	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
AGATACGACGTATTCA	alt_2132_negative	70	32	76	47	12	66	31	62	14	60
CCGGACCTACCTAACC	alt_2132_negative	85	44	75	65	38	75	33	66	38	75
GTCCTCCTCTTTCCCT	alt_2132_negative	19	7	16	4	8	18	7	10	4	12
GACGCCGAATTATAGG	alt_2132_negative	69	15	59	28	16	40	23	44	13	43
TCGCAACAGAACCATT	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
ATTATGGTCTACACTC	alt_2132_negative	192	52	238	154	56	169	78	141	46	197
AGGGGGGTGCCTCTAG	alt_2132_negative	238	62	283	201	87	183	70	223	80	250
CATATCTTGCGACAAT	alt_2132_negative	100	24	117	71	40	87	38	84	31	93
GGGTCGTTTTCCCGGA	alt_2132_negative	54	12	63	43	11	40	14	40	18	39
CTTTAAAGTTTCTCGG	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
ACGGTTGAACATGCTA	alt_2132_negative	66	43	47	34	44	43	42	24	45	42
CGACGTTCCCACTCCA	alt_2132_negative	121	34	121	90	46	100	46	98	43	128
ACTGGCCCGTTACCCC	alt_2132_negative	24	11	38	29	11	35	18	30	15	33
TTTCGATATTTCGGCA	alt_2132_negative	157	38	140	76	38	121	56	126	36	123
TCTCGTCTTATAGGCT	alt_2132_negative	38	20	43	40	23	46	16	36	19	29
TGTCTATAGGCTACAA	alt_2132_negative	84	30	99	55	27	84	40	64	33	77
AGTCTCAGATTAGCGT	alt_2132_negative	73	25	78	42	24	54	31	56	22	63
ACAGTCTTCTCACGGT	alt_2132_negative	67	24	78	41	29	54	30	69	23	68
CAAATAGGCGCGAATA	alt_2132_negative	148	46	144	112	45	121	45	118	53	139
ACAGTATTCAGCGGTA	alt_2132_negative	70	17	74	46	21	69	19	52	20	62
GGGTCTTTTTCCGACG	alt_2132_negative	162	54	190	135	62	132	53	133	38	149
TCTAGCGTGTGATCCC	alt_2132_negative	120	30	118	72	53	100	38	105	43	112
CGCCGACCCCTACCGT	alt_2132_negative	239	104	278	186	106	240	120	205	101	205
TTCACAGGATATCCTG	alt_2132_negative	0	1	0	0	0	0	0	0	0	0
TCCTTAAGTTCTTTAG	alt_2132_negative	66	22	75	27	11	48	12	42	13	54
TTCGCATTTCAGCGAG	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
CACCTGGTCGACGTAT	alt_2132_negative	9	4	6	4	9	6	12	6	14	6
CGAGCTGCGTTGATTT	alt_2132_negative	111	26	120	76	39	100	35	85	32	109
GGGCCTTTTCTAACAC	alt_2132_negative	122	38	150	71	30	100	36	70	39	90
CTTCTAAACATGAGCC	alt_2132_negative	0	0	0	0	0	0	0	0	0	0
TGTCTATCGTTTTTTA	alt_2132_negative	177	58	184	90	49	153	53	121	45	127
CTGTCTGTACCGAATT	alt_2132_negative	60	26	60	46	23	43	21	51	24	33
GGCGTCAGTGGATCGG	alt_2132_negative	74	29	96	61	17	60	18	51	26	72
CAGGTCTTCGTTCATG	alt_2132_negative	341	122	391	259	101	307	122	289	134	309
CCGGTTTAGGAGCGGC	alt_2132_negative	12	24	11	5	20	10	22	10	25	10
GACAGGCCGTGTATAG	alt_2132_negative	230	50	254	163	60	209	64	185	73	215
ATCTTACGTACGGCTG	ref_6092_new	22	58	32	32	41	25	60	27	50	21
TCTTCGGTGACAATAC	ref_6092_new	5	6	6	4	8	6	6	9	7	9
AACCAGGTCCTTGGTC	ref_6092_new	99	193	109	81	168	114	174	101	170	94
TAATACCCCCGTCCTT	ref_6092_new	1	18	4	6	12	3	6	3	11	2
GCGCGTCCAGTTCCCA	ref_6092_new	6	9	11	2	3	8	15	6	15	8
AACTCATCGTCTGTAG	ref_6092_new	0	0	0	0	0	0	0	0	0	0
TGTCGGCTAGGGTAAG	ref_6092_new	44	75	72	61	91	70	85	47	78	39
CTTCACGGTATATTTC	ref_6092_new	10	27	24	7	20	7	20	12	24	13
ATTAGTTCCTGGTGTC	ref_6092_new	16	35	20	19	31	17	24	14	41	15
TATTTTGCTAGGCTGT	ref_6092_new	12	15	21	10	28	8	24	10	22	16
CTCGAAAGGCGCTATG	ref_6092_new	0	0	0	0	0	0	0	0	0	0
TTAGGGGTATTGCAAG	ref_6092_new	4	9	12	14	19	13	9	10	12	13
GGCTGTAAGTTTATAT	ref_6092_new	24	29	21	19	29	18	42	17	33	22
TTACCGTCATTGGGAA	ref_6092_new	9	15	11	12	18	7	15	8	8	8
CTTTGGAGTTTTCCAC	ref_6092_new	71	171	118	117	184	103	156	100	193	84
GTTCGGTGAAGCACAG	ref_6092_new	2	4	2	6	8	6	5	3	7	6
AGACTGAGTTTTCGTG	ref_6092_new	10	4	7	2	9	3	9	9	11	4
AACCATGGATCGAAAC	ref_6092_new	14	23	35	24	26	11	28	29	36	26
ACCTGGGTTTTTCCGT	ref_6092_new	7	7	5	7	3	2	5	5	12	6
GTCAGTCCCTAGACCT	ref_6092_new	2	9	0	3	7	4	7	2	12	0
GGTCGCTTGGCCTGAG	ref_6092_new	2	1	1	0	4	1	4	1	3	3
GAAGCGCTCCGCTCAT	ref_6092_new	5	8	4	12	8	4	12	8	8	3
TTCATCCTCATCGTTT	ref_6092_new	0	0	0	0	0	0	0	0	0	0
AGTCTGAAGTCATGGT	ref_6092_new	0	0	0	0	0	0	0	0	0	0
GGTGTCTCCTTTCAAG	ref_6092_new	0	0	0	0	0	0	0	0	0	0
CCTAAGCAGGAGTCCG	ref_6092_new	2	11	3	5	11	3	7	1	7	3
GTCATAGCATCCTGTT	ref_6092_new	7	4	11	6	13	3	17	6	12	5
AAAACACTTTAGTTTG	ref_6092_new	0	0	0	0	0	0	0	0	0	0
TGTCCTGCCAGTAGAT	ref_6092_new	53	71	98	67	92	49	93	54	99	47
GAGATATCTCCCAATT	ref_6092_new	44	59	61	35	50	33	71	21	47	27
TGCGTATCAACGACGT	ref_6092_new	0	0	0	0	0	0	0	0	0	0
TAGTGAGCTACCAATC	ref_6092_new	47	62	46	42	80	42	71	36	68	38
CCTCGGCAGGCGCATA	ref_6092_new	39	72	51	48	80	43	82	31	69	41
TCATATCAGAACTCTG	ref_6092_new	0	0	0	0	0	0	0	0	0	0
TCTGCTCTTGCTATTA	ref_6092_new	3	2	4	0	0	1	1	0	6	1
CGTGTTACACAAGATT	ref_6092_new	41	49	39	40	41	27	43	26	62	27
ACCTAAGGCGCGTAAC	ref_6092_new	12	31	24	17	31	19	24	24	26	24
GGAAGCGGGACTGGCG	ref_6092_new	21	54	27	34	36	21	45	23	45	27
GACTCGGCCGTTTTAG	ref_6092_new	6	14	8	4	12	18	14	6	21	8
TAAGAGGCTCGCAAAA	ref_6092_new	78	111	76	65	96	74	102	61	142	69
TTATATCGTGTCATTT	ref_6092_new	9	21	18	14	18	16	19	9	32	13
AGCGCGTGTATTACCG	ref_6092_new	64	119	84	81	89	63	99	65	87	62
CCTTTTGCGGCTATTT	ref_6092_new	12	15	14	9	17	11	11	5	14	8
GCCTATTCATCGTAGA	ref_6092_new	49	111	74	52	110	85	111	68	75	45
TGGTTGCCCCTTGCTC	ref_6092_new	7	10	5	8	14	4	8	10	15	3
GGCTTCGCATATATCC	ref_6092_new	0	0	0	0	0	0	0	0	0	0
TGGAGCGAAGTTCATG	ref_6092_new	0	0	0	1	2	0	1	0	4	1
TTCCCCTCTGCCCCTA	ref_6092_new	33	46	19	20	46	25	42	23	59	21
CGGGTTTAATCTAAGA	ref_6092_new	55	85	72	59	110	52	77	57	119	52
GTCTGATTGTCTGATT	ref_6092_new	26	53	44	41	57	35	47	28	59	32
ATTAGCGGGCTCGATA	ref_6092_new	20	18	21	15	19	8	23	15	21	14
TTTTTACGCTCCCTGT	ref_6092_new	0	0	0	0	0	0	0	0	0	0
GAAGTTTAAGCGGACT	ref_6092_new	2	5	3	4	8	7	5	2	3	1
AGACGTTGATGTACGC	ref_6092_new	25	44	27	29	24	22	42	20	40	16
ACCTCGGAGGCTACGT	ref_6092_new	80	123	122	82	106	67	106	91	123	78
CTGTCTGTAAATATTA	ref_6092_new	13	10	10	22	29	15	23	9	21	8
TGAATTCGACACGGGT	ref_6092_new	11	15	18	12	8	13	12	10	13	17
GTGGTTTGTTGATCTG	ref_6092_new	17	26	14	14	22	11	19	9	31	14
AGGCAAGTGGATTGCG	ref_6092_new	31	63	44	33	66	35	71	29	62	31
CGCTATACTGCTAGTT	ref_6092_new	11	28	17	6	15	11	20	16	17	7
TACCGGAATACCTACT	ref_6092_new	17	64	22	21	55	30	75	23	60	24
CGGATTTTAGGACGCT	ref_6092_new	36	45	38	38	56	27	47	31	37	48
TTGGACGCTTCCGCCA	ref_6092_new	3	3	2	2	2	1	0	2	4	1
GTTTCTCAAATAGGCT	ref_6092_new	4	3	4	1	3	4	5	1	0	1
TTAGCGGAACACCGCT	ref_6092_new	31	27	27	36	27	20	33	14	23	22
GCATTCCTCCCCTTCC	ref_6092_new	12	27	15	9	21	17	36	12	24	8
TACTATTGATACTCGC	ref_6092_new	4	7	2	4	5	2	2	0	3	1
TGGCGACAGGTCTCGA	ref_6092_new	19	15	22	13	17	10	16	8	19	18
AAAACATTTGCCTTTA	ref_6092_new	3	8	5	1	3	4	4	3	9	2
CTTTTGAGTTTTCCAC	ref_6092_new	0	0	0	0	0	0	0	0	0	0
TTTTAACTGTAGGGCT	alt_6092_new	43	55	56	33	45	48	63	43	65	36
GAAGAATGATTGAGCT	ref_6092_new	4	8	4	5	7	6	5	6	2	2
TACATTCAATGTCCTT	ref_6092_new	54	69	48	39	88	51	74	49	74	36
TGTAGCGTCGCCATCG	ref_6092_new	0	0	0	0	0	0	0	0	0	0
GCCCTACACTGGGCAC	ref_6092_new	0	0	0	0	0	0	0	0	0	0
CATGCACCTTATACCA	ref_6092_new	15	21	24	21	20	9	21	19	13	11
GTCTTCTCAACCTCCC	ref_6092_new	4	5	2	1	5	3	5	3	11	3
GTGACAGATTGTGTGG	ref_6092_new	5	30	18	25	47	16	44	10	41	21
ATCGTTATCTGCATTG	alt_3781_reverse	7	14	7	6	16	11	13	16	7	12
ATCTTTCCGGCTCTTA	alt_3781_reverse	156	152	157	133	171	112	172	135	162	116
CATCAACAATTCTTCC	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TACTACCGACTTGCGA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTTAGTTGTGTAG	alt_3781_reverse	21	32	28	19	40	22	34	29	42	20
GTCAGACACTTCGATC	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTACCGCCTCCCGCTA	alt_3781_reverse	6	7	4	8	17	6	11	5	8	6
AAACTCCTACAATATA	alt_3781_reverse	19	22	15	17	21	20	28	16	25	9
GCGAAAGGCATCCCGC	alt_3781_reverse	42	34	29	38	19	27	24	19	35	21
TTTTTATTTACTTGTC	alt_3781_reverse	140	134	188	131	162	129	144	126	180	142
AGATTAAAAGCGATAC	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TGATACGCTGTTATCT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTTTTGTAAGGT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGAACATTTGAAA	ref_3781_reverse	24	32	25	24	40	22	24	16	20	21
CCCAACAGTTTTTCGG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CGGATTCAAGAGAACA	alt_3781_reverse	16	29	26	8	31	16	25	15	22	19
TCTCCTAGGTCATTGT	alt_3781_reverse	57	71	80	69	85	61	62	51	83	47
CCCTCCTGCGCGTAAG	alt_3781_reverse	6	1	4	3	4	1	0	2	1	1
TCATGTTAGGCGATCA	alt_3781_reverse	44	52	76	39	54	46	54	55	62	51
TCTTTTTCAGACAGCT	ref_3781_reverse	107	110	125	130	117	104	127	93	120	75
GCAATACAGAGAAGAA	alt_3781_reverse	11	10	12	11	9	11	14	13	12	19
ATGATTCTGACCATTT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CAAGATGATCTCTGCA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
GGACGCGAGTGGCCAA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTAAGGGTCATGG	alt_3781_reverse	17	28	24	28	21	20	26	22	33	15
TACTGGTGCGATTTTG	ref_3781_reverse	20	26	22	30	14	25	31	26	20	14
CCTTTGATCCCTGCTA	alt_3781_reverse	43	46	63	48	48	52	73	52	52	40
AATGGGTTGCCTAATA	alt_3781_reverse	81	107	118	93	126	82	89	71	105	76
CCGTTTAGTAGAGTTT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTACGTGAGCATC	alt_3781_reverse	36	41	51	42	50	48	37	37	63	42
CTCTGATCTTTGTTTT	alt_3781_reverse	85	96	116	82	109	92	80	81	90	85
TTGTAGGTCGAATGAC	alt_3781_reverse	58	59	79	57	63	62	90	47	87	43
ATACAGTAACCGAGCG	ref_3781_reverse	1	1	4	3	2	1	1	0	3	1
ATATGGATAACGTGAA	alt_3781_reverse	20	24	21	22	22	16	21	15	30	11
GCTGCGTCTCCTGTCC	alt_3781_reverse	14	11	24	16	16	12	21	16	12	15
GCCGCAGTTGTGCGTT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTTATATCGTAA	alt_3781_reverse	21	8	7	11	12	10	20	14	11	4
ATTCCGACAAACAGAG	alt_3781_reverse	11	15	12	12	15	7	7	8	12	9
ATATACTCGGCATGTT	alt_3781_reverse	69	86	105	96	75	73	112	80	104	59
CAGACTGTACTTTGTG	alt_3781_reverse	2	2	4	0	4	1	0	0	2	0
TCAGCATCCACAATGT	alt_3781_reverse	55	59	66	43	74	52	59	50	68	43
TGCAGCGTTGTGTTCC	alt_3781_reverse	32	29	37	21	38	32	41	37	43	22
GGTACACAGACTTTTA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTGCCCAGGCGTT	alt_3781_reverse	35	37	38	45	50	37	59	29	60	27
CAAAAAGCGAATCTTA	alt_3781_reverse	34	18	24	29	17	34	27	27	25	16
GCCCGGAATCAGCTGC	alt_3781_reverse	127	93	163	139	112	112	122	115	142	116
GCACTGTTCTCTCCGC	alt_3781_reverse	18	21	20	16	26	18	27	8	28	11
CGCAAGGCTTATTAAG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TAATAGTGATGTTTGG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGTTTTTAGGGGG	alt_3781_reverse	166	220	216	178	224	185	226	148	239	158
AGAAGTCCGGCTTGCT	alt_3781_reverse	15	36	37	23	27	17	28	21	38	21
CCCGCTTTGCGCGGCT	alt_3781_reverse	14	5	17	15	13	7	20	14	17	10
ATGTTTCCTTGTTCTG	alt_3781_reverse	67	88	87	87	64	75	79	50	75	72
ACGAACAAGTGTTAGG	ref_3781_reverse	296	346	333	279	337	281	325	235	372	266
CCGTTATCCGCGTATC	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTCGGATGGCGAG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
AATTGTACCTCACGAC	alt_3781_reverse	5	13	17	7	27	13	11	13	21	9
GTTCTGATCAAATTTG	alt_3781_reverse	54	51	57	66	52	75	71	48	70	36
TGTTTGTACTGCATCA	alt_3781_reverse	21	22	17	17	30	32	34	15	20	12
ATTATTGCTAGACATA	alt_3781_reverse	6	20	18	15	10	11	14	17	36	12
CAAGGTCTGATATTAA	alt_3781_reverse	11	26	15	14	17	15	15	9	17	10
TTAAGGGCCAGGTGCG	alt_3781_reverse	11	4	11	8	6	13	13	11	13	9
GTGGGCCTTCGTCTTA	alt_3781_reverse	9	35	11	15	52	8	49	13	49	12
ACTAAGATTTTGCGTC	alt_3781_reverse	11	21	17	21	13	19	13	17	15	12
TGCGTCTCGACATACC	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACATAACTATTGATCG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGGTTTATCACCA	alt_3781_reverse	14	18	22	12	14	16	12	11	13	15
CCTGGCTGTCTCGAGA	alt_3781_reverse	15	24	32	29	28	27	30	9	29	26
TACAATAATGGCCACG	alt_3781_reverse	96	77	101	90	97	93	90	96	97	79
TGAAACCTTAACTTGC	alt_3781_reverse	39	64	60	55	58	38	75	36	46	36
TACTTTAACATGCTGT	alt_3781_reverse	70	85	99	74	74	66	84	76	98	58
GTAACAGGAAAGTGTT	alt_3781_reverse	103	123	164	130	175	123	132	120	167	135
ATGCACCTTCACGATT	alt_3781_reverse	30	34	47	47	49	50	47	44	52	33
GGCTGTGTGGCCTCGA	alt_3781_reverse	18	23	21	21	18	12	23	21	26	13
ATTGTGCGCATTATCA	alt_3781_reverse	44	56	61	59	68	47	78	52	59	47
TCTCTCACCTGGTCAC	alt_3781_reverse	7	18	7	13	9	9	21	11	8	11
TACCCGCCACTCTAGG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
AATATACGACCTGGCT	alt_3781_reverse	59	76	67	66	68	50	60	56	73	53
TGTGAACTTAAGTGTA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTAGGTTGTCAT	alt_3781_reverse	17	36	22	22	31	34	28	25	42	19
TGTCCGATGAGGACTA	alt_3781_reverse	6	5	8	2	5	7	2	5	9	5
GCCCTACAGATGTGAG	alt_3781_reverse	36	42	29	37	53	29	38	30	38	26
AGGTTGATTTATTAGG	alt_3781_reverse	17	14	19	17	10	16	19	9	11	14
GTAATTGTATTTCTCT	alt_3781_reverse	3	1	9	4	5	4	0	5	3	2
CAATTTACGACTTCAT	alt_3781_reverse	12	23	23	28	22	19	24	14	17	19
TAACATGTGAATACGC	alt_3781_reverse	12	23	28	31	13	20	26	16	28	15
TGCTACCCAACCGCCT	alt_3781_reverse	84	104	108	108	121	86	107	88	92	79
TTTGTACCACTTCTTA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CGACTTCGGTCTCGTT	alt_3781_reverse	92	94	112	91	101	77	83	69	93	72
GAACTCGTCCTCGTTT	alt_3781_reverse	7	15	16	7	15	4	8	6	18	17
TCCTCCGGCCTTTCCT	alt_3781_reverse	15	29	23	16	20	16	20	10	22	13
ACTGGTGGTTCGTGCG	alt_3781_reverse	29	32	33	26	27	21	26	17	25	10
GTTAGCTTATCGAACC	alt_3781_reverse	44	46	58	49	36	32	38	37	47	44
GTAGTATATATGGTAA	alt_3781_reverse	32	43	36	31	38	37	33	34	34	26
TAGCATTTGTAGGGCG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACTATGATGCCGCAGT	alt_3781_reverse	3	0	2	4	2	1	2	4	3	4
CGGGCTAAGTATTCGG	alt_3781_reverse	167	234	233	161	202	176	220	170	247	154
ATGTTTTAGGGACCCT	alt_3781_reverse	70	106	64	76	101	76	85	67	101	64
TTAAATATTCATCGCA	alt_3781_reverse	23	15	33	22	26	27	30	16	25	20
TGTATCCATGTGGTCG	alt_3781_reverse	15	25	25	27	26	18	30	22	29	15
ACCCTTGTTTACTCCT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTGAGGCAGTCAA	alt_3781_reverse	12	11	18	9	0	13	16	10	4	11
TTGGGCGGGAGTGCCA	alt_3781_reverse	26	16	32	27	26	19	32	22	44	20
GATTGGCTGATCCGTG	alt_3781_reverse	87	106	149	116	88	130	95	115	97	101
TAAGAGCACAGTCGAA	alt_3781_reverse	34	39	44	28	47	34	44	33	64	32
CGAAACTATCGTATCT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TCAACTCGTGTCGTAG	alt_3781_reverse	124	162	150	143	176	115	172	140	160	118
CGGTTTGGCATGATGA	alt_3781_reverse	4	1	3	8	2	3	3	6	6	2
AATTTCGACTCAATCG	alt_3781_reverse	16	14	19	17	26	14	19	18	27	18
AGGTACGGTTTGCAGT	alt_3781_reverse	49	55	55	48	62	38	62	54	53	42
GTTCCTGATGCACTTT	alt_3781_reverse	29	29	32	34	31	27	44	21	28	24
TGATTTGGGTCTGTTA	alt_3781_reverse	33	34	38	39	35	37	46	41	52	36
AATCTTACAACAATCT	alt_3781_reverse	58	51	79	53	42	53	57	63	41	49
CCTAGATTCCGGAACG	alt_3781_reverse	38	65	72	68	81	48	62	48	71	48
TGATCGCGTGCCGATC	alt_3781_reverse	33	41	24	27	41	18	50	28	57	27
TTACGCTTTGTTTCGG	alt_3781_reverse	4	15	15	24	19	10	14	10	24	17
GAGCGCTCGCCACGGT	alt_3781_reverse	101	145	173	129	169	135	142	123	133	104
TCGTAAAGCAGGAAGT	alt_3781_reverse	5	6	2	2	4	3	6	5	6	2
GTCATGTTGTCAGTGT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTGGCACTTTCGC	alt_3781_reverse	37	42	51	24	40	29	37	33	34	26
ACTGGCCTTAGTCTAT	alt_3781_reverse	10	5	10	7	8	7	7	4	4	7
TGTCTTTGAAACATAT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCCGATTATGCTT	alt_3781_reverse	1	5	2	2	1	5	8	1	4	2
ATCTGGTGAGCCGTCT	alt_3781_reverse	3	3	5	2	6	0	5	4	6	3
CTTGCCCCACGCTGTT	alt_3781_reverse	8	16	30	20	17	12	19	17	21	14
TCTTAGTCACTGATAT	alt_3781_reverse	16	8	23	13	12	14	11	9	17	10
AGCTATCTTTTTTCTT	alt_3781_reverse	30	20	30	21	15	20	16	14	19	24
AAGCGCCGAACGCTCT	alt_3781_reverse	20	59	33	36	48	34	47	42	50	29
CTTTGTTACTCTCATC	alt_3781_reverse	31	45	41	35	57	28	53	33	63	33
GGTGCACGTGCTGTCG	alt_3781_reverse	85	99	103	67	110	83	103	86	100	85
GGTCCCTAGATTACCG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGAAGTCGTAGCT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCTTCCTTAACTC	alt_3781_reverse	42	50	52	51	45	29	73	32	54	42
CGTGGGAGCCAGGGCA	alt_3781_reverse	121	124	150	130	131	124	127	117	141	90
GTCCTGGCACACCGGA	alt_3781_reverse	12	14	15	8	14	18	12	4	7	12
TTGTTGGGGTTTTCCA	alt_3781_reverse	28	27	37	30	36	26	34	33	40	23
TCCTTCTTTCTCGATC	alt_3781_reverse	69	65	69	60	68	42	50	40	72	46
GGCTTCTGGCTTTGCC	alt_3781_reverse	19	16	36	24	20	26	34	17	31	24
GGGACCGGAACACTTA	alt_3781_reverse	14	8	23	5	16	15	16	12	15	22
CTACTTGCTCAAAAGC	alt_3781_reverse	3	4	4	1	8	2	6	4	4	6
TAGGGATTGAATTATT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTGTGTACCCTTG	alt_3781_reverse	34	57	55	39	43	39	44	30	45	44
CGACCGTGCTCACATT	alt_3781_reverse	43	22	22	29	44	28	20	21	25	24
CTCTCCGCGTGTATAA	alt_3781_reverse	32	38	31	27	27	33	27	42	37	29
TCGCGGTAAAAACCTC	alt_3781_reverse	23	20	24	16	17	19	18	15	16	17
GACGTCTACTTACATC	alt_3781_reverse	6	11	5	4	3	7	12	7	14	6
GACTGTAGAGCTCTAG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TACCTGTTGATTGGAT	alt_3781_reverse	8	8	8	7	5	3	6	9	6	4
CTGACTCAGGTCCTCG	alt_3781_reverse	82	92	98	94	97	116	117	89	112	88
AAGCCCACTGCTGGAA	alt_3781_reverse	30	16	47	25	41	20	32	27	31	17
ACTGTTACCGTCTTAG	alt_3781_reverse	43	72	66	51	49	37	55	42	50	42
TCCGCGAACAGGTGAA	alt_3781_reverse	43	40	60	31	39	31	64	35	46	31
TAATTACGAAACCGAT	alt_3781_reverse	45	30	47	38	46	29	38	44	41	33
TTCTTGTGTGCGACGT	alt_3781_reverse	83	90	90	57	105	78	100	72	91	69
TTCCTGGTAGGCGGCA	alt_3781_reverse	94	101	112	66	67	91	114	76	112	59
ATCTACTTTTAATCCC	alt_3781_reverse	32	31	36	26	39	27	27	34	27	22
CACTGGTCCAGGCCTC	alt_3781_reverse	36	43	30	40	50	35	39	26	53	38
CAACTTTCTGGTGCAA	alt_3781_reverse	163	206	226	163	205	184	219	182	210	130
ATCAACACGCTACTTC	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
GCAGAAGGGTCTAAAT	alt_3781_reverse	22	38	33	29	16	25	34	13	38	29
CGACCGACGTCATCTA	alt_3781_reverse	20	28	32	23	19	20	28	21	33	25
TAGCCGCGTATGGATT	alt_3781_reverse	46	59	66	35	47	48	59	41	53	43
GAGCTAGCTATCTTGC	alt_3781_reverse	26	30	29	20	40	21	34	28	25	18
TTCGGGATCACCCTCC	alt_3781_reverse	2	1	0	0	1	0	0	2	2	0
TGCTTAGGTAGGGGAG	alt_3781_reverse	13	9	9	13	15	4	18	12	11	7
GGTACGGTAATCGTTT	alt_3781_reverse	15	29	32	26	20	18	23	27	19	15
TCATGTGATCTTCGCC	alt_3781_reverse	88	116	95	92	99	95	118	87	100	88
CATTCTAGCCTTTCAC	alt_3781_reverse	3	2	5	4	3	4	7	4	2	6
GGTTCCAGAGTTTATT	ref_3781_reverse	34	25	29	27	33	31	40	37	29	28
GTAAAATACATTCAGG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCTCCCAGTATAT	alt_3781_reverse	57	74	79	72	59	74	74	60	75	73
CTTTCGCGGTATATCA	alt_3781_reverse	11	16	19	21	21	17	17	17	17	17
AGACAGCTCGCGGGCT	ref_3781_reverse	83	114	96	94	87	81	110	87	99	66
GGCTACCCTTTCGAGC	alt_3781_reverse	8	11	4	8	7	8	11	14	7	6
CCCTCTTACCCACTGA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
GCACCGATTTGAGCCC	alt_3781_reverse	22	22	44	38	31	33	18	26	33	15
CACTGCTCACTGTAGG	alt_3781_reverse	22	29	28	20	25	19	28	26	38	12
CAGGGTTTAAATTGTC	alt_3781_reverse	9	24	16	20	17	16	20	16	21	11
ATCGTTAAAGCGCCGT	alt_3781_reverse	101	112	128	98	116	99	139	85	142	95
GGATTAGGTGATGAGC	alt_3781_reverse	69	80	81	63	73	69	67	54	80	65
TGATCTTCGTTATCTA	alt_3781_reverse	6	3	7	11	7	13	6	4	10	10
GTCGTGAGCAGAAGGA	alt_3781_reverse	12	6	7	5	6	9	2	17	10	9
CGTGGGGGATGGTCAA	alt_3781_reverse	14	13	17	15	13	18	19	16	20	19
ACTAGCTGGGATTTAG	alt_3781_reverse	2	9	4	7	6	6	8	4	9	7
AGGTAGTTTACACACG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TCACACGCGACCTGCT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTATTGTGCAGGTCCT	alt_3781_reverse	90	133	128	84	109	95	130	85	135	93
TTCCCGTTGGCTCCTC	alt_3781_reverse	28	43	61	44	35	36	42	38	64	40
CCGCTAACAAGGCTCT	alt_3781_reverse	23	29	48	29	44	20	32	28	36	25
TTCCCATCATACCCAT	alt_3781_reverse	3	1	4	1	3	4	1	0	2	1
CTGCAGATTTTTCTTC	alt_3781_reverse	25	24	38	16	20	26	21	25	21	20
CAGATAGGTCCCCTAG	alt_3781_reverse	26	23	23	17	15	21	30	21	37	15
AGGATCGCTCGTTAAA	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTGTTTGATGCGT	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATCACCTAGCTCCAGT	alt_3781_reverse	43	50	43	43	41	35	44	33	48	32
TGGTATCGGCTTCACG	alt_3781_reverse	3	0	2	1	1	0	1	2	5	3
CTCGTATAGCTGACAG	alt_3781_reverse	24	25	27	24	20	22	37	22	18	18
CTAGGATCTTGGCGTA	alt_3781_reverse	27	46	42	33	39	30	27	30	57	36
CCAAACTGTCCGACAG	alt_3781_reverse	1	8	2	3	10	4	10	3	10	2
CGTTCCCTCTCTGGCT	alt_3781_reverse	3	16	10	11	8	5	9	4	9	4
CAATCGTGAGAGGGAC	alt_3781_reverse	14	17	22	18	18	19	23	28	30	19
TCTACGACTCAAACAC	alt_3781_reverse	14	22	27	16	32	18	32	22	30	18
AGTGCCTTAGCGAGGT	alt_3781_reverse	56	50	67	59	62	44	53	42	70	56
ACGACAGACGTGCAAG	alt_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGTACGTGAAAC	alt_5687_new	145	43	153	120	33	128	50	133	47	95
ACAATTAGTAACTTAG	alt_5687_new	63	39	102	76	42	73	40	71	39	62
TAGATGTCATTTTTTG	alt_5687_new	107	33	89	115	30	119	30	106	25	93
TTTGAGGTTCCTCGCC	alt_5687_new	13	3	15	21	5	10	2	8	3	12
TTGGTGATCACCGTAA	alt_5687_new	61	30	83	77	22	63	27	69	20	72
GCCTGGTCATCAGTAT	alt_5687_new	22	10	21	19	11	24	11	20	8	29
ATTGTCTCAGGGGAAA	alt_5687_new	98	36	131	105	63	106	46	100	44	122
TCAGATCGGTGTCTAA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
ATGAGCAACCCTGAGT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CTTGGCTGCGGGTGTA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TATCGCTTGTGAACTA	alt_5687_new	43	16	74	51	26	42	18	43	31	36
TTGCTGCTCTCACTTG	alt_5687_new	18	6	29	14	6	9	5	20	6	11
TTCCGGTGTAGGTGGC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CTCGCTATACCATTCC	alt_5687_new	5	4	12	10	6	5	6	12	5	7
CATCTACCATGGTTCT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TGTGCGTTGGATATGC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TACTTGGACTTATTCG	alt_5687_new	50	25	46	56	21	39	17	52	22	47
CTATACACAGCGTCCG	alt_5687_new	16	10	27	22	8	19	4	19	10	23
GAAGTCTGCGTCTCGT	alt_5687_new	41	16	73	49	18	51	13	43	26	29
ATGCTTGTCTGGAATC	alt_5687_new	21	14	29	39	16	31	13	26	26	26
ACGCTACGTTTTACGT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
ATTCACGGATCGTGTT	alt_5687_new	18	2	7	8	4	9	8	4	1	7
ATCCCTGGGTATATGG	alt_5687_new	28	19	42	39	8	40	12	46	27	34
CGTTAAACGCTGCTGT	alt_5687_new	27	18	54	37	11	41	17	30	20	30
CTAGCTCTTCGCGGTG	alt_5687_new	36	15	28	34	7	21	10	31	9	22
AGGGGCGCGCTAGGAC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CGCCATTATGCGTTGG	alt_5687_new	27	17	36	30	13	19	13	25	15	15
TTTTTTCCCTTATGGT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GGCGGGACATTCTATC	alt_5687_new	17	9	22	18	11	18	10	23	10	25
GTAGGCTGTTACTAAT	alt_5687_new	114	46	161	116	52	128	59	122	44	123
TACTGTAGTATGAATC	alt_5687_new	16	10	23	25	16	25	9	18	7	24
CCCAGATAAAGTCTTA	alt_5687_new	4	14	9	11	13	8	17	8	8	4
GTGCTTATATGCCCCG	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GTGGCATCCTCGTGCA	alt_5687_new	100	33	129	117	55	115	37	112	55	115
GACCGGTTGATTTCTT	alt_5687_new	25	4	26	29	13	17	8	23	14	14
TACCGTGCTTCAGCGT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
AACGGTGGGTTCGCAT	alt_5687_new	4	4	15	9	3	4	2	7	0	5
GGCGCCTCGAAGATCA	alt_5687_new	103	41	180	143	48	161	51	135	31	103
GCGTTATTAGGACTTA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CTTCTAAATATGAATA	alt_5687_new	22	9	36	24	17	24	7	26	10	21
TTGTGATAGTAGTCCC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TGGCTGTGCCTTCGCC	alt_5687_new	369	111	497	386	85	379	125	348	123	312
CATTCACAAAGCAATG	alt_5687_new	46	26	67	72	29	47	29	69	24	52
CTCTAGAGTAACTACT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CTGGAGCTTTGTATTG	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TGTATTATAGTTTGTC	alt_5687_new	173	59	189	150	67	153	77	143	81	120
AGGTTTGTCTGTGGTA	alt_5687_new	4	0	3	2	2	4	0	1	1	1
GTCCCTCGCCCAGCTA	alt_5687_new	134	43	130	124	40	109	55	101	55	111
TGCATAGGACGTATTT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CCTGTGGTCTCTAATA	alt_5687_new	39	20	50	40	20	30	16	31	23	30
ACAAAGTTGTTGAAGT	alt_5687_new	1	2	6	3	2	2	1	6	4	3
CCACCAGCTATTCGTT	alt_5687_new	15	12	27	10	7	14	5	16	12	12
AGGCCGCGTATATTTC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CCTCATAGGCTTCACG	alt_5687_new	27	9	31	36	14	39	17	29	14	19
ATTAGTTCCTTAGCAT	alt_5687_new	35	16	66	35	21	19	18	22	15	29
CCGATGATAGTCTGTT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
AGGTTGTGGGCGAGTG	alt_5687_new	289	121	331	288	78	210	98	245	110	235
GACCTGTCCCTTATCT	alt_5687_new	80	31	63	71	27	61	17	63	35	54
ATTGCCTTATAATTAA	alt_5687_new	23	13	34	31	6	28	7	35	15	22
CTCAGCGGTCTCGACA	alt_5687_new	41	31	59	50	36	52	34	45	37	32
GGTGCGATCGAACATC	alt_5687_new	5	3	10	10	1	13	2	17	3	8
AAAGGTATCGCTTTCT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CATTGAGGTCTACACA	alt_5687_new	18	6	23	24	11	21	9	19	13	14
ATATGCGATTGAGGGT	alt_5687_new	39	19	62	39	10	50	22	59	22	34
CACATGCGCAAAACAC	alt_5687_new	7	8	22	7	3	11	13	9	6	12
TACCGGGACGAATTTA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
ATTCGTGATGGGCAGT	alt_5687_new	301	134	390	312	106	264	115	278	137	263
CATATTCAACGTACTA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CGCCCTCACTTTAGTT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TTCCTTTACAACATTA	alt_5687_new	72	28	76	58	30	77	30	46	19	60
TTATTGGTAGGGCTCC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CTTCCCTGGGCTAGAG	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GTTGGGTGAACCCCAC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GGCTAGGTGGTGGCCC	alt_5687_new	43	24	64	65	28	45	35	57	26	57
TATACTCTTTTTCCTT	alt_5687_new	55	7	54	56	15	33	19	38	5	42
GACAAGGCCATCACCC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GGTAGTTCGGATACAT	alt_5687_new	81	37	101	103	22	70	30	76	23	75
GATTATGCTTATCAGC	alt_5687_new	15	4	23	14	9	19	8	13	17	15
CATTATATCCTTTAAT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GACGATGGCTTGGCTT	alt_5687_new	1	0	0	0	0	1	0	0	0	0
CTTGCGGACAGGTGTT	alt_5687_new	14	14	27	36	7	14	14	19	16	29
ATTCTGCCACCGCTAT	alt_5687_new	0	0	5	3	0	3	2	2	0	3
GTCAGAATGAGCAAGA	alt_5687_new	291	115	345	348	129	247	98	286	108	270
TAGAATCTAGGACATT	alt_5687_new	12	8	13	22	10	11	20	10	15	11
AAGATCCTGCGTATGT	alt_5687_new	64	24	89	71	28	61	38	94	32	61
CAAGGTCGCCGTCCCC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TTTTCAGGCAAGCGCC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TAGTCTGAAAAGCTAT	alt_5687_new	15	8	31	24	7	22	5	24	5	15
AAAGCAATATGCGCGC	alt_5687_new	110	44	158	121	38	123	28	101	30	93
GTCTTGCCATTGTCCA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GATTCGGCATTATTCG	alt_5687_new	46	20	61	46	18	41	15	51	20	42
TACTTCGGAAAGCTAG	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CACTTGGCTGGGGCCT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GCTGATTAACTTAGCC	alt_5687_new	60	21	104	77	25	63	33	68	36	82
GGCGCTTATCTCCATC	alt_5687_new	138	54	140	176	44	132	76	121	49	166
TTGCTTCAACGTTTTT	alt_5687_new	10	7	18	6	3	10	3	12	7	14
TATCTATAAGCTTGAA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CTCTGGACTTCTACTT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CAGACTCCATGACCAA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TCGGTTACACCGTTTT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TACGACGGCCTTTTTG	alt_5687_new	271	91	341	310	87	269	120	282	77	231
GAGAGTGCTACTGGAT	alt_5687_new	83	25	98	104	38	88	42	85	31	80
GCCGGTGCACCAGTGT	alt_5687_new	63	24	83	74	30	53	36	60	39	59
GCTACTCACACGCCCC	alt_5687_new	1	1	0	2	2	2	0	6	1	2
GTATGTCGTTACCTCT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
ACTCTTGGTTCTCAGA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TATGCTTGGTTTGCTC	alt_5687_new	52	18	40	44	17	49	22	34	18	33
CTTCTGGAATCTCTGG	alt_5687_new	11	11	30	22	9	22	14	8	13	18
AACTATTGGCCTATGC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CCTGTCCCTTAGTGCG	alt_5687_new	42	15	60	53	21	51	21	59	23	45
TAGAGTCTTTGGAACC	alt_5687_new	34	25	40	33	22	23	22	27	19	25
GTCCATATTTGGTCGC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TTCCCATGAAAAGGAT	alt_5687_new	42	13	46	47	18	41	26	43	13	39
GTTGATCTATCTTCTT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CTCGAGGATCGTTATT	alt_5687_new	103	32	136	116	61	118	39	113	46	107
TGGGAATGGTCGCGCA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
AGAGAACTCGAGTTGT	alt_5687_new	17	11	35	34	10	31	12	29	12	25
AATTGAAATACGTTTA	alt_5687_new	79	27	99	110	42	112	29	120	34	78
GTCCTGTCGATTTTTG	alt_5687_new	75	46	60	83	46	72	38	66	52	42
CTATGACGTGGATGCG	alt_5687_new	0	0	0	0	0	0	0	0	0	0
ATCGGCATATCTAGCG	alt_5687_new	14	3	18	19	10	12	5	9	5	14
GCTTTTTACTCCTATT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TCCTTCTTCCTGATGT	alt_5687_new	0	0	0	0	0	0	0	0	0	0
ACCAACTTCCGGCGAC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
AGCTACAGGCTAACAA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
ATGTTTCTGCTCGTAT	alt_5687_new	9	6	10	11	4	15	8	8	3	8
TTCAGGCGTACTGGTT	alt_5687_new	65	17	80	75	29	52	24	65	29	58
CATCTTCCCACGTCAG	alt_5687_new	137	41	130	140	56	98	60	107	58	115
ATATATAATGAAATAG	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GTTACTTCGAATGGCT	alt_5687_new	25	10	28	18	9	20	8	27	7	26
TCGGTGACTGCGTTCG	alt_5687_new	50	31	67	50	29	44	31	56	24	49
ATATTCAAATGGCTTG	alt_5687_new	76	31	118	116	34	92	42	93	31	93
GCACGCATTGTATTAC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
TGTCATTGTAGGTATG	alt_5687_new	58	25	69	65	27	57	35	71	32	64
TCCGTGCGTATGTGGG	alt_5687_new	12	3	10	12	8	7	5	11	3	10
TTATGCCGCACACATC	alt_5687_new	103	43	129	108	54	94	37	117	33	90
GCATATCGAGTCTCTA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GTCTAGGAAGGAATGC	alt_5687_new	9	14	10	9	18	9	12	7	21	16
CTATATCTTTGGCGTC	alt_5687_new	0	0	0	0	0	0	0	0	0	0
GACCATGGGCGTTACG	alt_5687_new	4	4	4	9	0	6	2	5	1	5
AAAGTGTTGCTGGGAT	alt_5687_new	24	8	32	17	16	16	6	11	7	12
CACCTTCTCGGTTCCT	alt_5687_new	132	55	186	160	56	154	63	167	60	161
CACAATGGGGTGTATA	alt_5687_new	0	0	0	0	0	0	0	0	0	0
CATTATCGATGTGGTT	alt_5038_reverse	51	19	65	58	27	60	30	76	29	75
CACTCCGTTCCCTAAA	ref_5038_reverse	479	423	625	534	472	485	504	498	475	452
TATTAGCGATTTTGCT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
AGTAATTTAGGCGATC	alt_5038_reverse	157	64	169	187	84	133	57	167	62	137
GGAGAACCCAGTGAAG	alt_5038_reverse	113	51	152	113	46	116	58	119	64	89
AAGCTATTCGTATCCA	alt_5038_reverse	69	35	83	65	19	59	23	55	21	50
TCGCGTTTTTACCTGG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CTAAGTTCTTAGACTA	alt_5038_reverse	175	98	242	180	89	176	87	166	94	145
TATCAACGATGAAGTA	alt_5038_reverse	15	2	16	15	6	17	6	15	9	15
TGTTATTGAGTAAGTG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACCGATTGTATTCAAA	alt_5038_reverse	109	52	112	125	39	100	62	109	64	99
AGGTTTTCTTTGATTT	alt_5038_reverse	101	55	116	94	36	93	61	97	54	85
GCTTACTGCATCCGTC	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CCGACCCACCGGCCAT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCGTATTTCCTTC	alt_5038_reverse	29	16	46	30	18	38	22	43	17	34
ATAATACATGATATCC	alt_5038_reverse	69	21	66	63	26	39	20	45	39	46
CTTGCAATTGATTGCT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTTTCACAGACCC	alt_5038_reverse	745	318	890	739	372	658	344	675	345	662
GCCTCCATGTTTATTA	alt_5038_reverse	151	69	202	196	72	143	81	168	77	150
CTTAGCGCAATTCAAC	alt_5038_reverse	24	21	26	38	16	34	7	16	9	25
CTTTGGATACTTCTTT	alt_5038_reverse	346	116	349	381	179	312	175	315	166	285
TGGATAACCTAAATGC	alt_5038_reverse	497	238	643	522	256	479	250	513	272	428
GAGATGCACGGCATAC	alt_5038_reverse	131	59	160	163	53	137	67	121	63	100
GATCTTCAGCTCCTTT	alt_5038_reverse	114	32	135	134	50	101	37	116	58	116
AACGCCTTTAATTTCA	alt_5038_reverse	82	53	104	102	43	96	45	82	45	75
CAGGATTAATAGGGGG	alt_5038_reverse	87	50	126	77	35	86	41	68	40	59
CCGTAGAGCAGCCGTT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTGTTGCCTTCCG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
AACTCCGTTCCCTAAA	alt_5038_reverse	0	0	0	0	0	0	0	0	1	0
TTTTCATAGGAGGTAT	alt_5038_reverse	68	37	93	69	38	65	33	36	36	76
TCCCTGGATAGGAGAC	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TGCACATTAATATAAT	alt_5038_reverse	19	11	35	26	11	18	12	14	10	9
CGTGTAACTTGTGCAA	alt_5038_reverse	74	36	80	57	44	40	40	54	42	60
ATTTTTCGCTACGCCG	alt_5038_reverse	24	20	26	32	8	29	19	30	22	19
ATGGGGCTGTGAATTG	alt_5038_reverse	85	34	98	98	38	71	36	86	29	84
GCAGATTGTTGGTCAG	alt_5038_reverse	304	128	391	350	142	322	133	284	164	269
ATCACACGATACCTTT	alt_5038_reverse	60	19	54	43	14	43	18	31	19	32
ATTTCCGTTTAGGTAA	alt_5038_reverse	42	22	60	53	30	42	30	38	26	31
TAATCCAGTAGTACAC	alt_5038_reverse	239	181	302	266	150	229	136	208	175	224
TCCAACTTATAGCATT	ref_5038_reverse	148	60	140	122	59	115	47	102	61	91
TGGCTGACTGATATAA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTATTTTTCCAA	alt_5038_reverse	187	80	215	147	72	161	64	154	54	139
GGGCTTTAGGAATCGG	alt_5038_reverse	149	69	192	149	57	143	53	174	58	142
TCAGTCAGCACTTTCG	alt_5038_reverse	97	52	120	115	44	91	40	95	34	104
ATCGACTATGTTACAA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGTCTCTGGGAGA	alt_5038_reverse	64	16	60	65	17	36	28	61	30	46
GCCCTGGATCACGTTG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CCTATGATCATATATA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GACAAAGAGATCCCGT	alt_5038_reverse	10	9	18	12	7	17	4	16	6	6
TCAACCCTCTCTATTC	alt_5038_reverse	23	6	15	20	5	14	6	9	13	8
GCCCCGCTCCTTGGCC	alt_5038_reverse	85	35	115	96	31	70	36	87	39	78
TCTCATGATCAGTTCG	alt_5038_reverse	44	18	50	42	28	39	19	37	20	42
GGTATATTAATCGCGT	alt_5038_reverse	65	23	85	74	24	68	49	64	29	65
TAGTTATATTCTCGTT	alt_5038_reverse	113	44	120	123	50	101	51	101	49	98
GGTTTGTTTCGTAATT	alt_5038_reverse	103	44	82	69	41	63	47	76	46	87
GCGTGCAGCGTCGGAA	alt_5038_reverse	319	142	369	292	134	298	129	300	154	266
TAAGCTAAAATTCCTT	alt_5038_reverse	22	11	26	17	14	27	18	36	10	10
GAGTTGTTTACCGCTG	alt_5038_reverse	132	67	180	154	60	123	51	160	57	138
CTGAGACTTGCTACAA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACATACATGAAAAGGA	alt_5038_reverse	237	93	288	216	107	196	116	238	95	235
GATGCACAGCGTTTAT	alt_5038_reverse	82	42	88	79	38	74	40	75	36	66
CTATAAATTCGTATTT	alt_5038_reverse	19	31	31	30	32	25	38	20	37	29
GTTAGAACCACATTTT	alt_5038_reverse	19	8	11	14	4	10	8	14	4	7
GGTAAACAGGTATGCT	alt_5038_reverse	215	123	291	250	113	226	105	197	115	233
CAGCATTCATATCCTG	alt_5038_reverse	152	76	200	145	79	162	78	153	81	125
TCTCATCTTATGTTGC	ref_5038_reverse	154	76	194	172	73	139	80	161	85	128
ACTCTTATCGTTCACA	alt_5038_reverse	93	40	131	123	48	87	40	97	31	114
ATGGTTAAGCCACTGC	ref_5038_reverse	399	175	483	420	204	358	175	330	189	337
TTGAGGTTGGCTGGGT	alt_5038_reverse	11	6	12	21	6	12	4	28	9	19
CTTGGTCCCGCGCACT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTTCACAGTGAGT	alt_5038_reverse	7	3	7	9	6	7	5	6	4	9
GAGCTTGATTCCTCAC	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACCCAGTCCTATTCTA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGCGCGCATAGCC	alt_5038_reverse	31	8	51	32	11	40	12	34	19	36
GGTCGGTCTAGGGCTC	alt_5038_reverse	13	9	27	19	8	19	11	15	5	19
CAGTGGTCGACCCGCC	alt_5038_reverse	20	10	10	20	11	16	15	12	3	8
CGATCAACACAAAGTT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CTGTACGGTGGTCCCT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGCCAACTCGGCT	alt_5038_reverse	50	23	78	53	31	58	30	63	25	63
ACAAAAAGACTGATAT	alt_5038_reverse	336	122	389	336	136	308	134	261	163	279
CACCCTAGAGTCATAC	alt_5038_reverse	31	13	26	26	11	25	16	26	18	20
GCACTATTTTTTCTCC	alt_5038_reverse	59	21	82	57	19	56	28	67	26	53
ACGTCCAAATGACCGT	alt_5038_reverse	127	64	163	136	48	124	49	111	53	102
ATCGTGTGCGTGTGCA	alt_5038_reverse	108	57	113	101	54	98	64	103	59	93
CTTACCTTCAGCGCTT	alt_5038_reverse	24	29	50	41	33	46	42	31	26	27
CGCCGTACTCTAATCT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TACACTTGGTCTATGG	alt_5038_reverse	24	3	31	16	8	23	14	16	15	17
ACTCGGGTCCATGGGA	alt_5038_reverse	43	24	61	60	33	45	27	53	19	52
CTGGCATTTACTGTAA	alt_5038_reverse	112	42	116	119	48	94	50	68	49	85
CTGTCTTATGTACTGG	alt_5038_reverse	8	1	4	2	3	4	4	2	1	1
AGCATGCCAAAGAAGT	alt_5038_reverse	21	8	26	22	8	26	11	27	11	30
CTTCGGTAGCATTCGT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TGCATACGCTATATTG	alt_5038_reverse	63	20	67	50	12	43	21	38	19	39
TGAGTGCAGCTAACAG	alt_5038_reverse	16	5	16	14	5	12	2	11	9	11
ATCTAGTTGTAATTAT	alt_5038_reverse	18	5	16	13	8	22	8	26	12	16
TGCTAGTACTATTGGA	alt_5038_reverse	147	78	174	149	71	120	78	143	69	98
GCTGCCTATTGTACCC	alt_5038_reverse	10	4	13	20	3	8	6	17	5	7
GGCTTACTCGTTGCGG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GCCATAACATAGTACT	alt_5038_reverse	17	19	35	23	13	20	10	17	19	20
CTCCAGTCGTTTTGGA	alt_5038_reverse	56	33	78	58	42	55	50	65	50	45
CCTTGGCCGCGCCCTC	alt_5038_reverse	0	12	5	6	8	1	5	1	5	0
TTTTTCTAGTTACGGG	alt_5038_reverse	37	15	43	43	26	31	16	41	14	31
CCACCATACAAGTTGA	alt_5038_reverse	108	58	131	110	55	116	63	101	59	101
CGTTTTTCATGTCCGA	alt_5038_reverse	139	33	158	158	42	122	42	134	54	123
GGCACCCGCGCGTGGA	alt_5038_reverse	16	4	16	23	4	24	11	21	10	16
CTGGGTCTGTTTTTGG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTATATGCAATGTGCC	alt_5038_reverse	39	21	41	43	25	55	13	39	12	29
AACTTTATTGAATGCA	alt_5038_reverse	68	39	64	53	29	52	31	53	29	50
CATACTTTCGGGACTC	alt_5038_reverse	10	3	14	14	4	17	5	6	4	9
TTCCTCAATGTTCCTA	alt_5038_reverse	37	13	42	33	18	36	21	22	17	25
TTGGCCAATCTCTGGA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CAACCCAGGCAGCCAA	alt_5038_reverse	40	20	38	41	20	32	9	49	13	24
GCCTTTTGTCTGTGTT	alt_5038_reverse	194	71	210	174	90	144	83	131	78	162
CTGGACGTCGGTTCCC	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCATAATATGTGA	alt_5038_reverse	225	104	290	226	85	185	104	192	93	190
GACGTCGAATTCGCCC	alt_5038_reverse	81	34	86	95	29	93	39	93	26	82
TCTTTGGTGGGACGGA	alt_5038_reverse	56	18	52	45	29	55	21	43	22	43
GAAAACGATGTCACAG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCAGGGGAGCTTT	alt_5038_reverse	190	58	273	215	78	155	78	193	70	183
TTGGGTTTAAATTGTT	alt_5038_reverse	48	23	47	48	23	46	23	29	20	27
TAATCAGGCGATTGGC	alt_5038_reverse	5	3	6	5	0	5	1	14	4	4
TATGGTTCTGACGCTT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CATTTAGAGCCATATT	alt_5038_reverse	145	55	166	124	64	112	51	106	53	112
AATGTTCCAGGTCCGG	alt_5038_reverse	167	94	197	192	103	149	89	176	102	110
GGTAAAGTATCTTCTC	alt_5038_reverse	108	33	126	90	24	91	45	83	38	59
CGGTGTACTGAGCAGG	alt_5038_reverse	107	57	136	111	38	94	49	93	60	89
GAAGCCCCTAATCCCG	alt_5038_reverse	90	31	127	78	39	88	39	84	38	82
ACGGTCATCTTTAAAC	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCGTTCGACACCA	alt_5038_reverse	27	2	23	27	8	25	11	16	19	16
GGCCATACGACCGGGG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ATAGAACTCTGGCTCC	alt_5038_reverse	456	203	584	479	211	442	221	454	257	427
AGGCCACATATATAGA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTGATAGTAAAAA	alt_5038_reverse	97	47	144	112	51	91	39	118	49	129
GGTTTGTTTGGGGGTG	alt_5038_reverse	105	64	118	102	62	102	68	95	58	95
TTACGTACGTACCACG	alt_5038_reverse	55	47	76	49	52	54	53	74	49	51
GTCGGTAAAATTAATC	alt_5038_reverse	43	17	62	58	10	40	22	36	14	37
CGGTTGGAGCACCGGC	alt_5038_reverse	196	53	202	173	66	178	61	171	71	179
CGTTCTATACGATTAT	alt_5038_reverse	262	128	316	289	107	258	113	236	126	191
GCGGTCCGATGTTTGC	alt_5038_reverse	104	47	137	107	47	104	49	104	64	111
CAAGTACATACCTTAT	alt_5038_reverse	23	32	28	22	26	25	14	15	20	17
TGTTCAGCTATAACAA	alt_5038_reverse	127	57	128	107	42	119	48	120	61	79
TGTTAGTGCGGCTAGC	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGATAGTGCGCG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACACCTACAACTTGTA	alt_5038_reverse	20	9	23	30	15	22	15	20	20	24
CGCGTCTGTATAGACG	alt_5038_reverse	46	27	54	44	32	52	28	56	23	45
TACCTGTTGGATATTA	alt_5038_reverse	20	17	32	25	14	25	16	35	26	23
GTTTCTCTTCCATGTT	ref_5038_reverse	74	25	74	60	31	57	21	57	35	54
TACACCTCCAGATGAT	alt_5038_reverse	171	69	146	126	69	120	77	140	74	112
GTCTTGCTGCTTACGT	alt_5038_reverse	139	66	153	128	56	153	66	140	54	124
TGCCCAGCGCAACCGT	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTATCGTCCCTTAAAA	alt_5038_reverse	29	10	39	34	18	31	15	23	22	35
AATCTTGTTTTTTACC	alt_5038_reverse	157	57	170	150	63	138	53	145	61	111
CACTCCGTTCCCTAGA	alt_5038_reverse	0	0	0	1	0	0	0	0	0	0
GTCTCTCGTATTCCTT	alt_5038_reverse	60	17	43	34	25	60	19	46	27	39
ACGGCATTAAAACCTC	alt_5038_reverse	21	2	25	24	14	7	11	23	9	20
GTATCTGTACTTTCCA	alt_5038_reverse	55	29	80	67	30	47	25	54	20	25
TCTGCCCAAGTGCATC	alt_5038_reverse	534	256	623	517	254	463	298	475	289	463
TTGAGTTGATTCTCTG	alt_5038_reverse	70	44	109	89	47	89	44	66	57	74
ACAACTAACAATAGTT	alt_5038_reverse	214	101	260	240	129	199	103	243	130	217
TACGGGGTATGCCCGA	alt_5038_reverse	32	16	26	28	10	18	20	23	10	25
TAGTTTTACGAATATT	ref_5038_reverse	200	89	233	212	94	194	99	207	90	165
ACCTTTCCCCCGGTAC	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTCACCGTTTTCTTGA	alt_5038_reverse	70	40	105	81	44	63	42	52	41	58
TGGGGGGGCGGAATGA	alt_5038_reverse	89	45	95	108	43	86	32	63	44	92
GCTCGAATCTGGATAT	alt_5038_reverse	44	24	74	52	23	60	29	63	21	38
CGCATGGTTTAACCTC	alt_5038_reverse	166	62	155	151	56	165	68	154	65	151
GATTGGGAATTTTCTC	alt_5038_reverse	15	4	12	21	7	13	8	18	16	16
ATTCCTAGACTGGTTT	alt_5038_reverse	7	1	8	14	2	6	6	4	5	8
GTAAATCTGTGGAAGA	alt_5038_reverse	80	29	90	64	38	59	34	56	46	52
CTTCGATGTCAGTCAA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACTACATTACGGTTCT	alt_5038_reverse	26	22	65	37	21	59	28	28	14	28
GTGGCCTATTCGCCTT	alt_5038_reverse	149	51	125	136	51	128	48	123	50	73
AGACATAGGAATAGCT	alt_5038_reverse	133	48	172	139	46	118	54	136	41	125
TTAGCGGAGCACGGTG	ref_5038_reverse	58	36	86	66	27	62	34	89	39	48
AGGACAGTGTGCCACG	alt_5038_reverse	51	25	60	47	18	49	24	48	22	53
GTACCTGTCATGCCGG	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGTCGTCACGGTG	alt_5038_reverse	42	14	53	43	16	32	7	49	21	43
GGGAAGCGTTCTCGAT	alt_5038_reverse	170	74	175	155	75	140	84	169	66	122
CACATTCTGTGTCCTC	alt_5038_reverse	15	9	17	14	14	9	10	15	7	14
ATTGCGACCAGAGATA	alt_5038_reverse	256	97	375	297	126	249	117	268	146	229
CTTGTCAGCCATCTGT	alt_5038_reverse	36	17	66	70	28	55	19	60	21	58
TATGCCTAGAGCCCTA	alt_5038_reverse	26	7	33	19	6	18	11	29	13	24
CGTCTATTAGCTTCGC	alt_5038_reverse	12	2	6	6	3	8	1	4	4	4
AGGTCTCCCCACACAT	alt_5038_reverse	149	85	199	189	74	157	63	182	101	144
CTACTCTGCGATACTA	alt_5038_reverse	0	0	0	0	0	0	0	0	0	0
CACGAACTGTCTACGC	alt_5038_reverse	289	106	339	271	105	221	123	295	122	217
TGTCACTTCCCGGGCA	alt_5038_reverse	10	2	6	10	8	6	8	7	6	12
GTTCGCGGGTGAGAAG	alt_5038_reverse	105	33	124	99	40	98	47	81	54	78
TTGCCTCTACTGGGAT	alt_5038_reverse	112	42	135	140	69	135	63	123	66	112
TGGGTTATTCAAAGCA	alt_5038_reverse	861	350	1031	808	382	782	413	774	410	732
GTGGCCGTACTTGTGT	alt_5038_reverse	181	120	160	146	115	140	115	162	126	108
ACCATATGGGGTATGT	alt_5038_reverse	134	54	159	159	77	129	73	113	75	112
AGGTCTACCTAGCGCT	alt_5038_reverse	45	37	67	71	32	51	29	68	35	63
TAAAGGTCGATGAACC	alt_5038_reverse	136	100	147	108	96	129	108	92	102	94
AGAGGGAGTCAAGCCC	alt_5038_reverse	11	2	14	11	5	11	0	9	4	6
GGTACTGGATGCAGGT	alt_5038_reverse	110	50	116	124	53	75	41	112	57	105
TCTTGCATATTCAGGT	ref_2295_upstream	24	27	33	32	41	24	27	26	37	26
GCCCACCTCTTCTTCT	ref_2295_upstream	31	32	24	18	31	22	20	30	21	19
CATTTCATTGGCCAGA	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCTTCCGTGGCGT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGTGTCTGCAATG	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTAATACGGACCA	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
AACATTCGCATGGGCG	ref_2295_upstream	15	20	10	12	18	10	22	9	15	8
GACTTAACTGTTTCTT	ref_2295_upstream	13	11	6	7	17	8	11	7	17	12
TTTGTTCTCTCGGCCT	ref_2295_upstream	22	14	17	13	17	15	17	12	18	18
ACGTGGAGTCTTGTCC	ref_2295_upstream	30	31	34	31	30	21	24	23	39	25
CGGTTATCACCCAGTA	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
TGACGTTAAGGGAAAA	ref_2295_upstream	6	5	5	4	0	4	4	4	6	4
TCCTGATGTTTTCGCT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGAATTCTGTCC	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CACTTACTTAGCTCCG	ref_2295_upstream	4	10	10	1	15	10	5	9	7	14
ACGTTCTGCCGTGAGT	ref_2295_upstream	250	286	330	248	298	238	316	243	287	209
CCCTATGTTTGCTCAC	ref_2295_upstream	74	192	112	110	197	68	200	61	217	72
ATAGCGAAGTGAGCCT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
ATAAATAGGAAGAACA	ref_2295_upstream	10	9	18	15	19	9	14	9	24	6
TGTTCAAAATTCTCAT	ref_2295_upstream	64	64	79	42	91	61	69	33	96	39
GTTGGCCCTTTTGCCG	ref_2295_upstream	16	16	8	19	14	14	17	14	15	18
AAGTACCTTGGACCTC	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
ACACTTTAGGAGCTGG	ref_2295_upstream	12	12	15	10	13	11	10	15	15	7
AGGAGATCGTTTTAGG	ref_2295_upstream	2	3	8	10	10	2	3	4	10	5
AACGCTGAATTGCCCT	ref_2295_upstream	170	171	167	150	179	159	211	172	181	163
TCTTGTGCCACTCCCC	ref_2295_upstream	0	11	1	0	7	1	6	2	10	1
TTTTCATCTCGAAGGG	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGAACGTTCATTC	ref_2295_upstream	49	60	58	51	55	48	44	47	53	44
GTCCGGTGACGCTTTG	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
AACGACAACCAAGATG	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTACCCCTTGTTCCCT	ref_2295_upstream	5	24	7	7	17	7	23	14	36	11
GTCAATGGTATCGTAG	ref_2295_upstream	14	16	14	12	18	19	20	21	19	16
ACAATTCGTCGCCTAC	ref_2295_upstream	85	91	113	83	86	96	132	94	115	72
CTAGCTTTACTCGTGT	ref_2295_upstream	12	9	7	6	11	12	9	7	16	1
CGGAATGCCGCAATTC	ref_2295_upstream	4	5	6	2	8	11	3	7	5	7
GCGGCATATTTTTTTC	ref_2295_upstream	48	45	46	44	47	44	60	48	51	46
ACCGGGTTTTGGTTCG	ref_2295_upstream	31	48	46	34	64	30	50	37	63	22
ATCCGTATCGTCTTGG	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
GCATGTAGTGTCAGCC	ref_2295_upstream	32	32	31	25	27	20	29	23	28	25
CTTAATACTTATTCGC	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCCGCCTGGCTGG	ref_2295_upstream	20	22	26	22	22	10	27	16	21	16
TTACACATCTCCAAAT	ref_2295_upstream	39	57	48	32	67	43	61	45	62	36
AGCGTACGGTCTCCTT	ref_2295_upstream	9	16	17	8	16	9	23	4	14	8
ACGGTTTGGGGGGGTG	ref_2295_upstream	2	7	1	1	4	2	3	2	1	3
ACGATCTTCGTTCCCC	ref_2295_upstream	1	4	5	1	5	3	2	2	8	5
TTACGCCCTTCAGTAT	ref_2295_upstream	35	40	51	40	65	23	52	41	66	32
TAATAAGGGCTCACTA	ref_2295_upstream	9	14	10	11	8	12	18	7	19	4
TGTCTTCCGTGAGCAG	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGGCGCGGTTAGT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAGGAATAGTTA	ref_2295_upstream	1	1	2	0	1	2	3	0	1	0
GGGCTTGGACCGGTTG	ref_2295_upstream	45	68	52	53	71	48	60	51	64	59
TTCGTCGGTTTGTTAG	ref_2295_upstream	2	2	4	8	5	6	2	1	4	3
AAAGGATCTGTCTTTC	ref_2295_upstream	3	3	9	4	6	2	3	3	7	9
TATGGACAATTGTTCT	ref_2295_upstream	2	1	3	3	1	1	3	3	4	2
TCTGACTGCCGTGCCT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCTTGCCTTAGTG	ref_2295_upstream	74	76	78	50	76	54	83	64	82	57
CAGGAATGTGTTGATT	ref_2295_upstream	50	42	58	38	59	48	60	56	65	50
TAGAATTGCCTAGGTC	ref_2295_upstream	33	43	30	36	41	45	50	32	51	35
AACGCAAATTTGCAAC	ref_2295_upstream	10	11	12	12	6	7	8	9	11	8
AGCAAGCGGGTGAATG	ref_2295_upstream	111	153	138	136	110	124	149	144	155	106
TAGGACTTGTTGAGAC	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
TCCATCCGTGTCAGTT	ref_2295_upstream	50	71	67	73	75	67	62	68	88	57
TTCATATTCCAGTGTA	ref_2295_upstream	33	22	24	19	18	18	22	13	26	12
ATGATAGGTTTCGCCG	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CTCGAGTTTAGCGTCC	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTGGTTCATCGAC	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTCAGACCTTGT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
GACCACCACTACCTTA	ref_2295_upstream	0	2	5	2	4	1	1	4	1	2
ACTTTTTATTCCTTGG	ref_2295_upstream	44	57	57	49	61	44	54	40	57	39
CGCCATGGCGGTCGCG	ref_2295_upstream	4	5	9	4	13	6	6	4	3	2
CTCTGCGTGCACGGCT	ref_2295_upstream	35	32	33	31	39	32	49	24	33	31
TCTGGGGGACCCATCC	ref_2295_upstream	53	58	73	43	58	62	50	39	72	46
GGCGGTCATGGCGCAA	ref_2295_upstream	111	125	140	151	158	108	130	131	145	133
AAGTACCTGTTTGTTT	ref_2295_upstream	78	80	121	83	96	65	90	67	76	58
ACTCGAGTCAGTACGA	ref_2295_upstream	15	22	31	24	28	22	24	15	32	21
TGTTAATTGTAGTGCA	ref_2295_upstream	19	18	29	14	20	18	24	13	10	15
GTCCGGCATAGTTGCC	ref_2295_upstream	11	21	15	10	10	8	13	11	17	11
ACACCTAGGCTCCGTA	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CGTTACCCTCTCACCG	ref_2295_upstream	1	9	5	6	4	3	10	5	6	7
GCACTAACTACTCTTC	ref_2295_upstream	20	35	48	27	22	30	36	38	27	35
CTCACCACTTTTTCCG	ref_2295_upstream	79	105	97	94	111	67	84	74	78	85
AGACTTCTAGATTGGT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGGCACCCCTGAT	ref_2295_upstream	32	26	21	19	27	24	31	17	28	18
CCTCTTGCGAGCGAAA	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
TGACTCCTAGGCGCCT	ref_2295_upstream	5	16	5	8	13	4	10	4	16	4
GGTCCTATCCAGTGTA	ref_2295_upstream	0	4	5	2	1	3	10	1	5	5
TCCGGAGCATCGTACT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
CAACTCGCGGAAGACA	ref_2295_upstream	141	151	163	155	124	137	160	116	148	117
GTGTATACGTTTTGTT	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
TACCAGATACTCGTAC	ref_2295_upstream	16	29	18	28	32	25	32	18	33	23
TTGAATTTTCGAATTA	ref_2295_upstream	65	82	77	67	71	66	100	74	87	65
GGTCCATTCACGGTAG	ref_2295_upstream	21	36	33	29	22	26	23	24	36	30
CGTTTTCTTGCGCCAA	ref_2295_upstream	29	23	36	25	35	33	34	28	29	20
CAGTAATGACCCCTAC	ref_2295_upstream	49	46	66	41	49	44	36	49	70	39
GATACTTTCTTACGGC	ref_2295_upstream	20	28	41	37	31	20	36	28	28	16
AAGGCTCATTATGACC	ref_2295_upstream	9	18	11	6	10	13	16	8	8	16
CAGTCACGACGGCACA	ref_2295_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGTCATCTTTACC	ref_2295_upstream	94	56	92	62	97	68	88	82	114	62
CGTTGCGATTGGGTTT	ref_3643_RC	30	66	36	22	52	24	58	28	49	28
CTGGTCCGGGGGAGTT	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
GCCGTTGCTTGCTGCC	ref_3643_RC	14	24	25	13	20	18	26	16	15	17
GCGCTTTATTTTCTTA	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
AAGTGACGGTTGTAAA	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
TTAGGCGAGTATACCA	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
TGAATCTGCACCAGGA	ref_3643_RC	6	20	15	10	23	18	22	14	24	11
TCGCAGTCCTTTTTAA	ref_3643_RC	72	108	100	67	122	67	112	68	128	50
ATAACGATTTTTATCG	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
GTCCACCGGTTACTGC	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
ACCGTGGCCAGGGTAT	ref_3643_RC	7	5	11	9	13	9	15	13	12	10
GTCATATCCATGACTG	ref_3643_RC	14	16	18	21	23	20	16	6	20	10
AGGTAATTACGCAGGG	ref_3643_RC	97	143	138	99	133	91	131	87	164	73
AGTCCGATTACGCACC	ref_3643_RC	8	14	7	6	18	7	23	10	12	7
CTTAAGAGCGTCATTT	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
AAACCCCTTATCATGG	ref_3643_RC	3	6	5	1	3	2	2	4	4	6
CAGTAGGCTACGCTTG	ref_3643_RC	40	101	55	55	93	43	103	41	86	35
CTGGAGATGAAAGCTG	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
GATCACCGACGCTTCG	ref_3643_RC	1	4	0	3	1	2	1	1	5	0
CCAACAAGCGACTTTA	ref_3643_RC	4	11	12	7	15	12	13	9	9	10
CTCGTCTGCATACCGC	ref_3643_RC	60	111	73	75	103	61	117	59	117	76
TTTGCCGGTAGTGGGT	ref_3643_RC	5	8	7	4	8	7	11	5	11	2
AACCGCTATACAATGG	ref_3643_RC	9	24	6	10	23	10	14	5	16	10
TCCGTCGCCTGGGTTT	ref_3643_RC	16	30	17	17	23	18	29	15	36	12
TTGCAAATGGTTCAAT	ref_3643_RC	35	64	34	17	36	23	45	27	54	33
CCGTAATTTAGTAGAT	ref_3643_RC	61	116	58	73	112	54	104	58	105	54
GATGCGGTGAACCTCA	ref_3643_RC	28	38	38	34	50	28	49	41	43	27
ATGCCACGGATTCTCA	ref_3643_RC	29	34	28	16	23	12	35	14	37	7
TGCTCGACATTTGCGT	ref_3643_RC	14	18	18	11	16	19	22	11	13	12
ACGTGGTCACTTAATG	ref_3643_RC	18	40	22	21	46	16	37	17	46	21
AGGCATCGGAAATCAT	ref_3643_RC	74	82	78	54	92	59	114	68	94	56
GTAAGGCACGTCCTGC	ref_3643_RC	15	24	20	19	18	19	24	10	24	8
ACACTTTTTACCCCGC	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
ATGTCAAACATGAGTC	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
CCGGACATTCTCCGAC	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
CTACCAGGGATTAAAG	ref_3643_RC	27	40	47	27	51	29	48	36	48	30
CGTCATACGATGTCGG	ref_3643_RC	88	137	101	106	144	99	123	77	166	79
TGCGGTTGTGGCAGGT	ref_3643_RC	16	19	10	12	40	15	31	9	25	14
CATGATCCGTTTAAGG	ref_3643_RC	3	4	4	4	5	3	2	3	6	9
GTGGCCGGCGAGCGGT	ref_3643_RC	3	1	0	1	7	0	7	3	11	2
TTATATGGTTACTCGT	ref_3643_RC	14	25	18	16	28	23	18	9	36	15
TTACGTCGGAACGGTC	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
TGGAACAATGTTAGTA	ref_3643_RC	18	26	20	26	47	18	31	19	27	14
TGGGCGCTTTTGCCCT	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
ATATGGCTATTATTTT	ref_3643_RC	13	13	13	13	21	7	9	16	25	16
TAGCCCCTGCACTTCC	ref_3643_RC	2	2	5	1	1	1	2	0	0	1
TCCGGTTTCAGTATAT	ref_3643_RC	30	68	26	32	66	22	40	25	52	36
GCCCAAATGGTTTTCC	ref_3643_RC	17	30	25	24	30	22	28	26	29	12
ATATAGTGTGGTGATG	ref_3643_RC	36	67	37	32	68	39	76	26	67	31
ACGTCTTGTTTACAGT	ref_3643_RC	16	26	19	19	26	23	28	23	34	18
CCCCCCTATCTCATGT	ref_3643_RC	3	17	10	6	16	5	15	5	20	6
CGCGCTCTCAGGTATG	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
TTTGGATTAGGTTTAT	ref_3643_RC	5	5	6	1	5	0	7	4	4	3
ACATTCAGTAAGCCAG	ref_3643_RC	9	21	9	13	19	13	16	8	13	9
ATTTCGTGATATGTCC	alt_3643_RC	12	27	24	19	13	21	22	14	31	16
CGCTATGTTGTGGTCT	ref_3643_RC	37	50	42	27	58	34	56	32	59	22
AATATTCAATATAACC	ref_3643_RC	111	211	132	120	201	121	203	127	231	116
CACGAGTCCTAACACG	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
CCCGGTATCGCCGCGT	ref_3643_RC	11	16	11	5	12	12	23	7	24	3
GAACTCTGAGACGGTA	ref_3643_RC	13	8	19	14	21	13	18	10	23	13
CCCTCTGCGGGCTGGT	ref_3643_RC	77	157	68	52	135	50	139	31	150	81
TTCGAGGCAATTGACG	ref_3643_RC	17	21	22	14	19	20	23	12	26	11
GTCCTCTTTTAATGCT	ref_3643_RC	47	89	81	45	79	47	85	44	69	32
CGTAGTCCGAGAATTG	ref_3643_RC	31	38	23	30	41	20	33	24	44	16
TTTTCTATCCGTTCCC	ref_3643_RC	9	9	8	10	9	9	23	11	7	4
TGCATTCGTCGCCTTA	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
TTCACGCCGTCATGTT	ref_3643_RC	12	16	10	17	15	11	14	18	20	14
GGGTATTTCGAAATAC	ref_3643_RC	9	18	4	8	12	8	18	9	13	12
CAAAGAGTGGTGGCGA	ref_3643_RC	4	8	3	4	4	3	4	5	4	2
TAACCAGATTCTTGTC	ref_3643_RC	122	201	174	148	234	154	231	156	248	123
CTTGTCCTCGATCGCG	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
CACGGGAATATGCGTT	ref_3643_RC	97	127	134	100	110	73	122	90	115	104
CAGAATCCTGCTATGT	ref_3643_RC	63	72	68	45	75	54	94	58	96	47
TTGGAACATTTAAGGC	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
GTCCTACTATAAGAGG	ref_3643_RC	18	25	8	16	32	24	34	14	43	12
ACGGTTGATATCCTAA	ref_3643_RC	22	42	25	27	59	23	61	25	48	20
TACCCATCTGACCCAC	ref_3643_RC	19	34	21	34	33	18	42	23	42	20
GCGCTCTCCGGTGTTT	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
GTGGCGCTGACCGGTG	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
TACACGAAACATGCCA	ref_3643_RC	50	90	74	66	72	38	105	52	90	42
AAGTAATGCTAGACAC	ref_3643_RC	50	84	55	55	88	53	83	45	93	57
CAGAACCGTCGCTGAT	ref_3643_RC	36	48	32	32	52	28	54	27	51	19
GTCCCGTTTGCTACCA	ref_3643_RC	1	4	2	3	4	1	7	1	2	3
ATTGTGTCTTATTAGG	ref_3643_RC	7	11	6	8	5	6	18	0	13	8
CACAACTCCCTGTGTA	ref_3643_RC	0	12	4	10	7	2	11	2	15	3
CGCGCTTCGTGACTTT	ref_3643_RC	0	0	0	0	0	0	0	0	0	0
AATTAGTAATTCTGTC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GTCTTGTCCCAGTCGG	ref_5961_new	3	11	6	3	12	8	9	8	22	5
GCTCTATCGTTTCATC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CTTTCGCACGCATCCG	ref_5961_new	2	9	2	0	6	0	3	2	2	1
ACTTATTATTTCAAGA	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GAGCATTTCGTGACAC	ref_5961_new	1	20	12	8	7	6	10	9	7	14
TGCACGCAATCCGGCT	ref_5961_new	5	6	7	6	7	5	1	2	5	0
GTTGGTCAGATGGCAT	ref_5961_new	19	31	13	10	19	17	36	11	26	8
AACCGAGGTTTTTGAG	ref_5961_new	11	12	9	10	14	11	15	6	15	8
CTGGCATTTACGAATT	ref_5961_new	4	7	5	5	13	4	6	3	6	7
AAACTTCATTGCACTT	ref_5961_new	4	4	1	5	3	0	9	0	3	1
TTTTCCATGATTACTA	ref_5961_new	226	264	308	219	303	197	283	231	289	194
AACTTGCGTTCATCAA	ref_5961_new	15	12	12	3	20	5	22	5	30	6
TTCTTCTCTGCACGGG	ref_5961_new	14	13	12	8	23	11	15	6	13	4
AATCCCTGCCTGCGTG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
AACGAGCCTTTGGAAG	ref_5961_new	68	165	110	104	170	92	173	85	163	82
TCAGTCGTAGAGGTCT	ref_5961_new	15	29	15	9	27	13	24	9	41	8
TTTTGAGGGTCTAATC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CAAACGTGAGTGTAAC	ref_5961_new	26	62	30	40	80	38	83	39	69	39
TATATAGTTTCGGATT	ref_5961_new	11	10	4	6	14	11	13	12	20	9
GCCTAGTACAAGTGGG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GTTGTAGCCTTAAACT	ref_5961_new	4	5	4	3	4	4	6	9	10	3
TTTATAGTGTCTTTAG	ref_5961_new	0	5	2	2	1	0	1	0	5	2
GCTGAAGGTCTTGAGG	ref_5961_new	100	151	107	72	133	71	130	75	147	74
CGCATTATCTTGACTA	ref_5961_new	0	0	0	0	0	0	0	0	0	0
ACTACGGGTTCTTTGC	ref_5961_new	50	95	73	55	87	60	100	42	103	44
TATTTTATCCGGCTAG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TCTGAACGTTTCCTAG	ref_5961_new	10	21	9	9	16	8	31	3	26	10
CCGCTGCTTATTTACA	ref_5961_new	6	6	1	4	17	5	11	7	18	4
GTCGGATCCCGCCCCT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TCGCATATAGCGATAT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TGCATATTTTCGTGTC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TGTACAATTCTACCCA	ref_5961_new	11	39	31	16	59	21	35	11	35	12
CGGGCCATCTTAAGGG	ref_5961_new	12	42	14	18	48	20	50	22	46	11
AGGCCCAAATAATGTT	ref_5961_new	102	180	114	100	162	92	168	93	160	82
TTGGGCAGTATATATG	ref_5961_new	3	5	6	7	7	3	6	4	9	0
AATCTCACATAGTGTC	ref_5961_new	19	41	35	21	47	24	53	26	59	19
GGGCTTCCTCGGTCCG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
ATCATCCATAGTACCG	ref_5961_new	34	54	25	32	40	25	59	19	46	20
TTTAGTTCAGCGGGTA	ref_5961_new	11	7	12	7	18	9	10	6	8	4
TTGATAATCTGGCTTC	ref_5961_new	20	19	22	20	18	10	38	9	11	12
ACGGGCTCCAGATGCG	ref_5961_new	19	29	31	25	33	18	26	18	45	17
TTTCGGTCTACACGTC	ref_5961_new	32	72	39	36	61	38	89	35	95	37
TACGACCTCATGGTAC	ref_5961_new	17	25	23	23	25	6	17	12	32	10
GTTTGCTACTAAACGG	ref_5961_new	3	11	11	2	7	2	10	2	9	3
CTATCAACTGCATTGT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GGTGAACGTTTTGTAC	ref_5961_new	15	38	18	17	28	21	30	13	34	15
GCGGGAACTAACGCCT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GGCGTTGTGCTGGACA	ref_5961_new	121	197	136	109	210	108	208	127	177	118
CGATCAGTTTGAGTAA	ref_5961_new	27	30	25	22	45	30	36	29	56	18
AGGGGTCTCGAGCAAT	ref_5961_new	4	7	11	5	14	6	19	6	22	3
TTCTGAAGGACTTGTT	ref_5961_new	58	95	48	48	104	63	125	52	107	53
TAAAAGCTTCTTTTGT	ref_5961_new	31	45	33	39	44	31	48	27	34	30
AGTCAGCTCTGCGGGG	ref_5961_new	23	31	35	29	41	46	31	33	39	22
CAATGTTTTGGCCTAT	ref_5961_new	35	58	37	37	71	45	73	43	55	46
ACGGGGAGTACATCAG	ref_5961_new	0	3	2	1	3	0	4	0	1	0
CATTGTGCCATATGGC	ref_5961_new	10	19	12	6	21	12	18	3	22	6
TAAGATATCGCTCCAC	ref_5961_new	1	4	4	4	8	0	3	1	8	4
GCGCCGATTTTTCATG	ref_5961_new	49	51	53	49	74	47	53	51	58	50
CCGTGCCATAGGGCCG	ref_5961_new	6	16	6	6	15	6	17	6	16	1
AGGACAAATTGATATA	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TGCCTTGTGCGAGAGG	ref_5961_new	7	3	6	4	6	3	6	8	5	1
TGGTATGCGCGGTCTC	ref_5961_new	6	2	2	5	3	3	7	1	4	4
CCTTTCTTGATTTCTC	ref_5961_new	80	112	96	81	109	61	108	74	135	57
AACCTATGAGTCATAC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TTGCTCCGACCTATGA	ref_5961_new	34	59	44	41	55	21	66	23	75	27
TAAGAGCCTTCTGATG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GGGCGTTCCACAGCGG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
ATAGATGGATAGGTAT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TTATTCCTCTAGTGTT	ref_5961_new	11	11	9	7	20	10	21	4	20	14
GCGCACATTTATTACT	ref_5961_new	9	12	8	6	12	5	12	6	15	5
GTTCGCTCGTCAGTGT	ref_5961_new	16	45	23	15	45	31	37	16	49	20
TACCTTGGGGGGTTGG	ref_5961_new	12	7	8	2	13	5	10	5	7	3
GTCCAGTGCATATCTA	ref_5961_new	49	82	56	46	99	43	82	41	89	41
TACAAGCGCGCGCAAG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GTATGAACGGGTTCTC	ref_5961_new	1	4	5	3	6	8	7	4	5	5
CCCGGGAGGGCGAGAT	ref_5961_new	15	24	23	26	39	15	20	23	33	25
CTAACGCCCTCTCGGC	ref_5961_new	0	0	0	2	0	0	0	0	2	0
GGCGATCTTTACCGTC	ref_5961_new	3	14	8	6	13	4	4	6	6	8
GGCTCGTCAGAGGAGA	ref_5961_new	55	100	87	70	112	96	128	58	137	52
TTCCGTATTCGCATTG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
AACAGTTGAAATTCTT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CGCACGTTGTTATATG	ref_5961_new	25	46	28	18	36	33	45	24	44	31
CTTCAAAAATTTCGGT	ref_5961_new	18	22	11	8	22	9	20	7	25	10
AGTATCCCAAATAGAG	ref_5961_new	22	59	42	23	59	20	59	26	59	30
GGGTATAGCCCCCTGT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
ATGTTTACGCCGGCAC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GATAATCCACGTCAAT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
AGGCAGAGGTTCATGG	ref_5961_new	50	83	70	60	108	60	73	62	112	33
CTGTGGACGCTTTAAT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CTCGTCACCCAGAGCC	ref_5961_new	19	19	22	21	26	21	40	23	31	14
TTAGTATTTTAGGATG	ref_5961_new	0	0	0	1	3	0	0	0	1	0
CTAGGTAGCAGGTAGA	ref_5961_new	4	11	9	9	9	6	7	3	12	2
TCCCCGTGCGAATCAT	ref_5961_new	22	112	15	20	115	17	121	32	134	19
ACTCCCCAGCATCGAC	ref_5961_new	6	46	8	10	47	7	51	5	46	8
GCAAAATTTTAGCGAG	ref_5961_new	4	10	4	4	8	7	9	3	10	2
TTTTTTTATTATCTAG	ref_5961_new	0	0	1	0	0	0	0	0	0	0
TCCTATGCCCTCTATT	ref_5961_new	4	21	10	6	18	2	12	5	12	1
CGGTCTCGTATTGTAG	ref_5961_new	6	10	12	10	21	11	25	6	18	9
ACCAACTACACGACCG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CTCTTTCTATGTCCTT	ref_5961_new	14	24	7	9	23	10	29	24	14	17
TACGGACTGTTGGATG	ref_5961_new	2	3	3	2	6	2	7	3	9	3
AACACTTTGACTTATT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GATAGTTAATGATAGG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CTTCCCCGGTCAACCA	ref_5961_new	13	23	9	12	22	11	14	11	14	6
GCCCCGGTTAAATCGG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GTTCTACACTCCGACT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CTCATTGCAGCATCGT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CTTATCGGCTTCCATC	ref_5961_new	14	20	15	4	14	12	15	9	22	13
TGGAGACAAGTTATTT	ref_5961_new	5	20	12	12	19	13	12	10	17	9
TTCTAAACTTGAGAAC	ref_5961_new	63	105	82	63	107	58	125	44	146	38
TTGCTCCTTATCCACC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CACGGGTCTTAAGTTG	ref_5961_new	10	24	12	10	27	12	30	5	23	8
GCCTAATGTTGAGTCC	ref_5961_new	0	0	1	0	0	0	0	0	0	0
TCTCTCTGCTGTTTTT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
AAGTGGCAGGGCTTTG	ref_5961_new	12	24	16	14	12	11	19	10	24	7
CTAAATCATACTTATG	ref_5961_new	65	132	86	61	130	62	153	70	140	77
TCATTGGCTTGGGCGG	ref_5961_new	6	21	9	14	27	10	21	10	20	9
GCGTCAAACGGGGGAT	ref_5961_new	42	79	42	43	52	33	92	49	84	32
CTACAGCCAAATAGCT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
ATAGCCCGTGCTTCTT	ref_5961_new	40	68	41	43	67	32	63	25	88	33
CAACGGCGACGTCAGG	ref_5961_new	196	355	238	199	373	197	312	175	385	181
CACGGGTAGGAGTAGG	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CACCGGGGATCTTAAT	ref_5961_new	18	42	23	14	52	17	40	21	48	15
CCAGAGGGTGCATCCA	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GTTTCACTTAGTTTTT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GGTCTACGGTATATTG	ref_5961_new	30	53	40	28	53	44	53	35	61	21
TAGTTTTTGTCAACAA	ref_5961_new	0	0	0	0	0	0	0	0	0	0
CACGGGCTTGTGATAT	ref_5961_new	1	8	5	6	7	6	6	3	11	7
CTGCTGCTAGGGACCG	ref_5961_new	5	13	8	3	14	5	10	3	11	7
CATAAACCCTGGCCCG	ref_5961_new	6	7	8	2	10	5	13	9	13	5
CGGTCAGCGTGGCTTG	ref_5961_new	6	31	1	2	30	5	27	5	23	2
TCGTATGTTGTTATAC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
GTTAGTATATGCGGTC	ref_5961_new	8	20	20	9	29	13	29	9	21	12
TTGAGCTGGAATGGGC	ref_5961_new	7	9	9	13	9	7	17	7	30	12
TTTTTTATTATCTAGT	ref_5961_new	46	104	72	41	86	57	82	44	100	60
GTTCCCATGCACGCTT	ref_5961_new	10	6	7	3	9	7	11	9	18	5
CCCTGTCTCGATGCTG	ref_5961_new	17	24	14	13	34	12	33	8	26	15
TTGCCCGCTTGCCTTG	ref_5961_new	4	5	7	4	11	3	6	2	9	1
GAGACTTTGTAGGCTC	ref_5961_new	74	144	91	74	175	80	160	79	148	49
CTATCCCGTATGGCGA	ref_5961_new	7	32	15	14	25	13	20	7	16	8
CTGGTATGTCCGCTCC	ref_5961_new	76	96	93	59	95	71	110	62	115	70
GCAGCTCACAGATTAC	ref_5961_new	0	0	0	0	0	0	0	0	0	0
AATTAGGTAAATAAGC	ref_5961_new	10	18	16	14	24	17	25	11	28	13
TGATGTGCTCGTCATT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTGTTGTCTTA	ref_5961_new	53	76	78	46	66	59	65	46	67	48
GTCTAGTACAGAAATC	ref_5961_new	81	171	109	103	172	94	176	70	186	71
AGACTAATTACTTGAT	ref_5961_new	0	0	0	0	0	0	0	0	0	0
TCTAGTATCGCTCATG	ref_5961_new	53	121	38	37	108	32	114	24	115	35
CTTAGCTGGCTAAGAC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCTGCTGAATCTA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGCCATCGGCATTCGG	alt_5419_reverse	35	40	37	32	41	36	38	35	43	37
TTTTGTGTTTAAATCG	alt_5419_reverse	132	158	145	136	208	118	202	141	234	126
TACTCCCCCTTTAGGT	alt_5419_reverse	7	27	4	4	24	6	24	3	24	6
TAACCAGTTTTTGCTA	alt_5419_reverse	16	34	35	22	37	21	40	29	43	29
CGTACCTTGTGGTGCG	alt_5419_reverse	13	39	36	40	40	29	52	19	46	33
TCGGTGATGAGGATTC	alt_5419_reverse	2	1	6	1	4	5	3	2	5	1
TTCCAATAAATGAGCT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CAGGAGAGTCTGACCT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
GATTAGCGCGGGGTTT	alt_5419_reverse	56	94	64	68	77	61	73	61	89	55
GTATCGGTTGAATAAT	alt_5419_reverse	15	22	25	22	33	15	27	24	31	26
TAACTAGCGTGATGGT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
AATGAATCGTACTGGT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTACATTTTCATT	alt_5419_reverse	73	76	86	76	79	69	69	60	73	67
TAGTTTTTCTCGGGAC	alt_5419_reverse	10	19	13	16	21	17	19	14	22	14
AGGTAATTACAGTCCT	alt_5419_reverse	36	37	41	36	53	40	51	34	55	33
CACTGGTAGTATAGTC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTTGTGCCGGCAA	alt_5419_reverse	9	16	8	2	13	6	16	7	9	8
ACGTTATATTGGGAGC	alt_5419_reverse	1	1	1	2	3	0	1	1	3	2
GATTATCGATGTTTCG	alt_5419_reverse	12	15	15	17	15	9	13	12	21	19
GTACTTATGCTACATT	alt_5419_reverse	9	14	12	10	23	11	17	7	12	8
AGTGGTACGATCTGTC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TCTATGGGGGGTCAGC	alt_5419_reverse	28	26	25	15	33	10	27	14	35	11
CAGCGGTCTCTCATCC	alt_5419_reverse	1	0	1	0	3	1	3	3	2	0
GCAATCCAACGCAGTT	alt_5419_reverse	25	44	40	21	35	21	32	25	38	22
TACCATTTATTGATCG	alt_5419_reverse	10	26	16	23	39	18	25	20	31	23
CCCGTCGCCCGTCTGA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CAAGAGAGTGTTCAGC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCCAATATCCGT	alt_5419_reverse	22	14	28	19	15	16	24	19	28	20
TCCGCTTGCACCGAAC	alt_5419_reverse	64	78	90	93	78	89	98	67	81	74
TCCAGGACAGGTTGCG	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGTACGTATGCTC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAACATTATCTGG	alt_5419_reverse	23	25	29	28	30	22	42	33	37	22
CATGGTAGACTGTCTT	alt_5419_reverse	1	4	7	4	11	8	3	2	7	2
CCCGACGCTGCGCCGT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTATTTAGCCCGT	alt_5419_reverse	12	30	12	8	27	12	32	14	29	18
TAGTCCTCTAGGGTCA	alt_5419_reverse	38	48	41	40	44	36	42	29	45	32
TGTTTATATTACTCCC	alt_5419_reverse	18	29	14	16	25	13	33	8	33	8
GGACACCTCATCTAGC	alt_5419_reverse	78	87	78	72	99	71	115	70	113	53
ATCATCCGCCCGAGCT	alt_5419_reverse	9	5	0	4	2	3	3	2	5	2
GGGCGGACCTTCGAAC	alt_5419_reverse	10	14	19	20	30	13	24	16	24	21
GAATTCATAATCCGAG	alt_5419_reverse	4	7	6	2	5	2	4	4	3	3
CATATGACTTGGCGAG	alt_5419_reverse	5	8	2	4	13	4	11	5	13	4
TACAATAGTCCTCTCG	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTATTCCGCGAGGAAG	alt_5419_reverse	11	19	16	6	34	14	18	10	14	12
CTCAGCTAGAAATAAA	alt_5419_reverse	25	37	37	43	52	28	27	33	43	28
TTCATGTTTCTTCGTA	alt_5419_reverse	158	166	171	167	221	171	229	121	212	146
TTCCTCGAGAAAGGAA	alt_5419_reverse	45	54	68	48	96	66	62	48	74	53
TGTTGTCTGATAATGA	alt_5419_reverse	2	4	2	3	6	1	5	6	13	1
TACTTTGATGAAGTTA	alt_5419_reverse	16	33	17	15	19	20	21	28	20	9
TGCTTTCGAGTACTGC	alt_5419_reverse	12	26	17	14	34	23	20	21	30	13
AATATAGACGTTCATA	alt_5419_reverse	2	6	2	2	0	2	0	2	1	2
TGGCTCTTAAGAGGAA	alt_5419_reverse	74	130	103	82	136	52	134	82	116	69
TATGATCTTTCGGCCT	alt_5419_reverse	22	15	29	15	32	18	33	27	22	20
GGACAGCCATATGGCA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TGATGTGGTTCGCATT	alt_5419_reverse	5	17	10	3	14	11	13	8	10	11
TAATCGATATAAAATC	alt_5419_reverse	14	33	31	23	16	26	19	22	21	8
CACCCGTTGAGTGTGC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGACTAGTCCACCGCG	alt_5419_reverse	9	20	14	8	19	15	19	14	12	10
TTCTGTCTGATACGTC	alt_5419_reverse	42	61	78	49	55	39	76	46	66	43
CCGGGGGCGGATCAGT	alt_5419_reverse	3	6	4	3	5	4	0	2	5	4
GAGCCCCCAGATTAAT	alt_5419_reverse	3	4	3	2	3	6	2	0	3	0
TTGTCCCCATCGGGGT	alt_5419_reverse	3	7	1	0	14	5	6	5	18	0
GACATTGGACTCAGTA	alt_5419_reverse	5	6	5	3	8	4	9	7	9	5
AGTCATTGAACCTCGA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTGCACGTACAGTAAC	alt_5419_reverse	7	18	19	16	15	5	14	6	25	7
TCCTTAGAGGATGGGC	alt_5419_reverse	5	5	8	1	1	3	9	7	5	1
ACCTGTTTGTGACTAT	alt_5419_reverse	44	79	61	57	81	47	90	36	95	45
CGCATTTTAAGGGTAA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CACTAGATTTCTCTTG	alt_5419_reverse	36	42	44	40	37	39	53	31	60	38
AGGAGACAATGTCCCC	alt_5419_reverse	5	2	6	3	9	0	7	3	5	5
ATCAATGCTTGCTGTC	alt_5419_reverse	29	42	25	22	37	23	32	17	45	15
TGGGAGAGATTGTTAT	alt_5419_reverse	2	6	4	5	6	2	3	6	0	0
TGTATTCAATAACATA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTACTAAGCACAG	alt_5419_reverse	7	14	7	14	5	5	8	4	8	12
GGCAGATGTGAATCAA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CACTAGTTACCTAGCT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGATACTGTACTACTC	alt_5419_reverse	12	10	9	15	12	4	9	5	4	10
TTATTCGGTGCGTCCC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTAACCCTCGAAT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTGATCTGTTGAT	alt_5419_reverse	13	29	18	10	30	21	31	18	19	13
AAGAGTTGTAGATGCT	alt_5419_reverse	8	11	22	15	15	4	21	14	20	10
ACAAAAAACGTTTTTT	alt_5419_reverse	33	48	42	42	53	31	34	26	33	21
TTTATGAATATAGTCC	alt_5419_reverse	10	13	7	9	11	12	13	14	14	4
TGTGGGATTATGCCTA	alt_5419_reverse	21	25	28	26	19	26	35	19	28	21
CAAACGTGTTCCCAGG	alt_5419_reverse	85	103	77	80	124	86	103	79	94	66
TCCTTTTAAGACGCTT	alt_5419_reverse	106	153	121	98	157	107	161	105	184	84
CTATGTTAGGGCAGTT	alt_5419_reverse	51	70	67	65	73	36	71	43	86	39
AGGGTATCATATTTCT	alt_5419_reverse	77	84	69	96	86	83	75	63	97	62
GAGACTCGATACGGGT	alt_5419_reverse	9	7	11	16	21	4	11	5	8	19
GGGACCCTCTAGAACA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TGAACATCCCCTTTCG	alt_5419_reverse	57	76	81	65	83	51	85	73	86	52
GAACGCACTATACCTG	alt_5419_reverse	1	3	1	1	3	0	1	0	3	2
ACTTGACAAACGTAAG	alt_5419_reverse	5	5	4	1	3	2	8	1	3	3
TAGGTAGTTTAAACGC	alt_5419_reverse	12	28	27	25	25	14	48	15	32	12
GCATTCGTTTTGCTTT	alt_5419_reverse	27	30	25	25	31	21	35	36	32	21
CTCATGCATACATTGG	alt_5419_reverse	63	91	66	45	108	57	86	56	79	40
TTATGTAGCTATGTCT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTTTGTATGTCG	alt_5419_reverse	202	301	280	257	331	181	355	178	336	189
TTGCACGCGTAGTTCA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGGAATACCGCAGCTG	alt_5419_reverse	81	106	106	76	138	108	141	86	120	85
CCTCGTACGGTCTTGC	alt_5419_reverse	15	29	11	13	26	12	17	11	24	6
TCCCAGAGAGATGTCG	alt_5419_reverse	57	77	65	64	85	48	56	66	68	40
GCGGTAGCCTTGGGCA	alt_5419_reverse	37	32	29	37	34	29	42	30	46	26
ACCCTATGCACTTCCT	alt_5419_reverse	15	18	10	11	17	18	13	10	28	14
CTGTTGGCAGCGCCGT	alt_5419_reverse	16	25	14	13	28	24	30	12	22	11
TGTCGTAGTATAGTTT	alt_5419_reverse	60	75	61	56	55	52	72	49	65	53
CGGGGGGTATAAGCAT	alt_5419_reverse	9	12	13	14	13	7	14	16	5	7
CGTGTCGGACACTTAT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
AGTTATCCACTGGGGG	alt_5419_reverse	22	18	13	13	15	12	24	12	21	9
TCTAGGACTCAGTCAC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCTATTGCAGGG	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTGAGGGTCTATT	alt_5419_reverse	37	57	56	49	52	43	57	34	77	52
TCTATGCTATACCATC	alt_5419_reverse	29	51	32	42	54	32	51	33	58	31
TGCTAGCGTGTCCGAA	alt_5419_reverse	6	10	7	8	11	11	17	9	17	7
TGTTTACGCTGAATAG	alt_5419_reverse	27	22	25	17	23	11	30	11	33	16
ATGCTTACGCTCCGTT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
GGTGAAATGTTACCGC	alt_5419_reverse	9	8	9	13	9	5	10	3	8	2
TCTTTTCTGGCATTGA	alt_5419_reverse	23	21	25	21	24	26	31	17	28	20
GACTGATAGAACCCTC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGGGGCTTTAGTT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGTGATCGATTCG	alt_5419_reverse	6	10	4	5	12	2	11	8	20	2
GAGTGTCGGATAATGC	alt_5419_reverse	14	18	17	15	14	14	10	9	16	8
TTGTTACCTGCGGGAT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCTCATCCTGTCT	alt_5419_reverse	18	34	33	20	31	23	48	13	49	21
TGAGGATTGACCCTGA	alt_5419_reverse	36	41	46	37	40	29	38	32	34	27
AACAATTCACGAGCTG	alt_5419_reverse	8	18	19	8	19	13	17	18	27	11
TAATTCCCTTCAATAC	alt_5419_reverse	76	97	69	87	107	60	87	67	99	46
CTTGATCCAGTGTTTG	alt_5419_reverse	47	65	66	38	61	41	55	40	70	35
CCCGGATCTTAAGTGT	alt_5419_reverse	17	13	18	21	28	20	30	17	26	17
TCCCAGGGGCAAGCTC	alt_5419_reverse	18	20	13	16	11	15	15	8	19	12
CTTCTCTTTTTCTATA	alt_5419_reverse	63	67	68	53	63	58	73	40	102	40
GTCTGCTACTGGATCC	alt_5419_reverse	79	94	86	74	95	64	113	79	113	65
GAGTGTAAACCGTTGT	alt_5419_reverse	5	8	6	5	4	7	6	4	10	1
GGGCCGCGTTTCGCTA	alt_5419_reverse	31	36	33	30	49	29	58	28	53	27
AAAGGGAATGTCAGCA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTCACGTGTTGAT	alt_5419_reverse	47	44	44	40	55	33	58	23	44	41
CGGTGGTCTCGAATGG	alt_5419_reverse	9	22	12	2	15	4	10	10	22	3
ACACCTGGTATTCGTG	alt_5419_reverse	21	51	28	30	42	25	43	29	44	14
TTGCCCAAACAAAAGC	alt_5419_reverse	24	30	36	30	16	23	39	30	32	25
ATTCGTTATTGAGTCT	alt_5419_reverse	33	44	43	28	59	30	53	27	50	30
GATACTGTACAGCCTA	alt_5419_reverse	10	22	13	8	14	13	18	17	15	20
TAAGCTCTGTCCCTGT	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTACCATTGCAGCAAT	alt_5419_reverse	35	29	27	14	36	27	24	25	28	19
GGGGTGTGATACGCAC	alt_5419_reverse	5	5	3	5	4	2	2	0	10	4
GAGGTGCATCGACAAA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTGATATATCGGT	alt_5419_reverse	79	120	118	84	110	96	102	80	112	79
AACAGTAAACTGGAAT	alt_5419_reverse	14	23	23	16	29	15	29	12	23	13
GAATTGCTCCTAGGGA	alt_5419_reverse	9	0	10	5	7	5	14	0	7	5
ACTCTGTGTTGAAGCC	alt_5419_reverse	11	34	20	17	21	22	20	11	28	24
GTGACCAACGAGCGTC	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
CTCAATGGATTCAGTC	alt_5419_reverse	14	39	29	28	50	20	47	22	46	19
ACACGCCTGATACAAT	alt_5419_reverse	34	51	42	34	55	25	45	32	50	41
TGATTCCGATAACCAG	alt_5419_reverse	4	6	4	4	8	10	6	4	13	5
CCTTCATCTTGTCTGG	alt_5419_reverse	36	83	64	48	56	46	56	36	61	35
CTAGTAGCATTGACTG	alt_5419_reverse	62	115	87	62	96	60	102	58	109	50
CCTGCCACTCGCTGCA	alt_5419_reverse	0	0	0	0	0	0	0	0	0	0
TTATCCATGACTCTAC	alt_5419_reverse	27	28	26	25	36	19	36	25	41	19
AGTTTCTCTCTCAATC	alt_2783_reverse	23	57	25	38	51	26	55	20	65	22
ATTGAATCCGTACTCA	alt_2783_reverse	5	18	9	7	19	9	15	7	18	5
TTACTCTATGCAGTTT	alt_2783_reverse	1	8	0	0	6	2	3	1	6	3
AAGCACTCCATGCACA	alt_2783_reverse	15	39	14	27	45	14	36	16	42	23
CCTTTCGTAAGAGTCG	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
AGAACATTATCCGCTT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
CAAAATGCCAAAGATT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
TGAAAATCTGTGTGCT	alt_2783_reverse	26	51	25	26	55	22	54	25	53	9
CGATTCAACGGAGAGC	alt_2783_reverse	18	37	22	16	43	12	52	24	38	14
TTTGACCAAACTAGTA	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGGGTTCAACCGC	alt_2783_reverse	10	27	19	14	27	18	27	10	38	14
GCATTTTGCTTGATAG	alt_2783_reverse	19	38	31	18	30	26	41	27	55	18
TGGGCGGTTATATAGT	alt_2783_reverse	24	70	27	22	88	19	68	21	63	22
CCGGCATCTAGATGGT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCGGTCAATCATT	alt_2783_reverse	19	31	23	16	36	18	38	17	39	16
TCGTTAATGCGGCTGC	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
TTGCACCGTATTGGCC	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGATCTGTTACCT	alt_2783_reverse	0	0	0	0	2	0	1	0	0	0
ACTGAATTCCTTTTCC	alt_2783_reverse	10	31	18	10	30	13	43	16	35	13
GATATTTGCACGCTAA	alt_2783_reverse	13	26	14	7	40	14	26	8	25	13
TAGAGTCTGTTCGTAC	alt_2783_reverse	3	17	4	5	10	2	5	4	5	2
TGTTTTCCCGCCGCCG	alt_2783_reverse	0	1	0	0	0	0	0	0	0	0
CCATCGGAACTTTCGA	alt_2783_reverse	20	32	13	17	44	12	36	13	39	15
TCAGCTAGAGATTTAT	alt_2783_reverse	23	70	20	30	50	25	62	18	53	17
GCGTCGTGTGGAATCC	alt_2783_reverse	21	46	14	15	32	14	35	19	33	17
TTGCCCATGACATTCG	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCGGGCATTGTCA	alt_2783_reverse	16	83	34	26	84	35	75	24	82	33
TGCATCTACCGACCCG	alt_2783_reverse	0	4	2	3	4	0	6	1	5	2
AGGCTTTTTAGCCTGT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
TGTGAGAAGCCTTTTC	alt_2783_reverse	19	30	14	17	34	20	38	19	38	21
TCCACAACGTTTCGCC	alt_2783_reverse	6	22	8	6	24	3	22	3	28	4
ATTTTACTACACACCA	alt_2783_reverse	14	49	15	20	33	16	37	25	39	14
TTGCCTGAATATTAGA	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
ATATATTCGCTCGAGG	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTGACGCTTGGTC	alt_2783_reverse	10	26	17	13	22	17	29	8	21	8
TTTCTGCGCAACGGAA	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
GGGACGGAAAAATTCC	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCGTTTCATTGCA	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGCTTGATTACTT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
AACTGCGGTGCAGCGC	alt_2783_reverse	8	23	6	10	25	5	29	7	16	10
GTATTCCATAATGACT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTCGTCAATGAT	alt_2783_reverse	8	30	13	14	31	12	37	8	32	9
ATAAGGCATTTCCGAG	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
ACACCATTGTGAGGGC	alt_2783_reverse	6	21	12	12	16	9	16	13	19	10
ATGGTCTTATACGGAG	alt_2783_reverse	30	56	31	24	57	21	70	26	65	21
GCGTGGGGTCATCTAC	alt_2783_reverse	10	52	28	29	44	21	49	16	54	25
CCAGTGTTGCTAGTTC	alt_2783_reverse	1	6	3	4	5	4	4	1	8	0
TATCTGCATTTTCTCT	alt_2783_reverse	49	109	69	55	83	63	89	42	72	31
GGTAGCTCGGACCACC	alt_2783_reverse	6	16	8	5	14	9	20	6	10	1
CTTTGGCGCGCCTTCG	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
GCTCATCCTAACTACC	alt_2783_reverse	0	0	0	0	3	0	0	0	1	0
CACTGTCGTTCCATTC	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGCCGAATTCTTT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCGCCATTTTGCA	alt_2783_reverse	1	3	5	2	2	2	1	1	1	1
CCTATCATCTTTTGCA	alt_2783_reverse	32	73	44	30	83	36	110	35	97	36
ATCTAATTCGCGATGT	alt_2783_reverse	1	7	3	0	4	6	3	4	9	0
TACTAACGTTTTTGCT	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGCTGATGCAAT	alt_2783_reverse	18	54	13	13	45	15	38	11	36	22
TATGTCGTTAGGCAAA	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
AGGAATATCCATTTTG	alt_2783_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCATGGTTGCCCC	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
TATATCGTTTTTAATA	ref_1787_upstream	74	58	94	69	50	91	61	70	63	74
CTGGGCTTAAATGTGT	ref_1787_upstream	34	22	33	33	22	25	26	26	30	32
GTCTCGCACAATCGAT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
GGGCGAAGCTCTCAGC	ref_1787_upstream	67	61	82	76	43	73	46	77	61	64
TGCATTCTTAGCTAGT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTTCTGGCGGTCC	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGTATTTTGACG	ref_1787_upstream	17	11	21	17	19	21	13	19	11	9
CAATGATCAACTGAGT	ref_1787_upstream	20	12	16	23	10	18	25	21	13	15
GGCGCTTCCTGCTTTC	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTTTGCTATGTT	ref_1787_upstream	42	29	74	48	44	38	33	45	39	48
GTCATACCAACATTCT	ref_1787_upstream	45	46	66	55	61	55	20	33	42	51
TGTGCCTTGTGTATGC	ref_1787_upstream	194	165	173	160	160	156	188	143	158	157
CTGATTTGTGCGGTTA	ref_1787_upstream	16	19	13	17	19	12	13	14	14	14
TTCTGTATGTTCAGAT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTTTAGACGTTTT	ref_1787_upstream	98	58	120	117	74	99	69	94	72	89
GATGCGCAGGTTGTTG	ref_1787_upstream	73	80	116	97	70	69	68	74	55	59
AATCTAGAAAGACTTC	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
ACACCCAGGTTAGTAA	ref_1787_upstream	56	43	96	68	39	67	62	59	58	65
GCCGTTAGGGCTGGGG	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGACGAAAGTCAT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
ACGGCCGGCGCCTCGG	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
TCTGGCTACCTGCCTA	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCACTATGTCTTC	ref_1787_upstream	32	26	22	43	40	20	36	21	29	22
TGTCCAATTCTGCAGA	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAGGTTTTCTGT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
AGGGGCGTTCCATCGT	ref_1787_upstream	4	2	2	6	5	6	2	9	2	1
GAGGTCCAGTGTTTTT	ref_1787_upstream	27	29	32	29	32	34	22	26	27	30
GTTCTCTGGCGGCTTT	ref_1787_upstream	6	7	11	5	7	10	10	6	9	13
AACCGGGAGCAATCGA	ref_1787_upstream	102	73	103	88	68	85	82	94	70	82
ATCTCTAGTTCGCATC	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCTGTGAGGCATT	ref_1787_upstream	13	18	29	15	12	11	6	12	15	20
CCTATCAGTGTATCCG	ref_1787_upstream	28	50	41	34	42	25	58	34	44	14
TGCAAACGTGAGGGAA	ref_1787_upstream	310	218	383	319	280	310	221	276	284	285
AGCGCCTGGTGGGGAT	ref_1787_upstream	29	23	28	22	23	14	18	19	12	27
GTCTAGGTTAAAACAT	ref_1787_upstream	4	1	8	7	0	0	2	2	2	0
TCTTGCAAGTACCGAT	ref_1787_upstream	86	82	122	93	56	98	89	88	64	84
CCTTTTGCCGCAGCAC	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
GCATTCGCTATACTGT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
AATCGCTAATAAACGT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
TCGGAAGGTTTCCGTT	ref_1787_upstream	0	0	0	0	0	0	0	0	0	0
GAGGCCCGTGGCCTTG	ref_5655_new	65	116	105	69	115	61	121	72	136	61
TGTTTGGCGTAGGCAA	ref_5655_new	87	147	106	86	166	69	176	91	145	60
GGGGGTCCTAGGCAGC	ref_5655_new	7	9	4	9	4	6	6	8	3	3
ATCCGTACGAATTTTT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
CCTATCATTTGGATTT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
CAAGTTGCCTCTTATA	ref_5655_new	12	16	22	16	28	12	32	7	24	12
CCATATGCATTGGTGT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GGCTTCGTGCGAGTAT	ref_5655_new	33	39	29	34	41	21	47	15	58	21
GGGATCAAATACGCCT	ref_5655_new	5	12	15	10	18	14	25	13	25	10
TATCTGCACGCTGAGA	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TGATGTTCGTAGAGTT	ref_5655_new	19	31	25	15	40	19	24	16	36	15
TTGTTTAGTTTTTAAA	ref_5655_new	10	19	22	4	27	12	17	14	14	14
TTTAGCGAACAGGCAT	ref_5655_new	90	120	93	87	130	66	139	58	155	59
GCCGATCGCACCGCCT	ref_5655_new	11	13	5	5	7	3	12	6	13	13
ATGAGTTGTAATTTTT	ref_5655_new	16	35	23	12	38	24	38	24	27	11
GATGGGCGGCTCGTTA	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TGCGCCCTCTCGTGAA	ref_5655_new	2	2	2	1	5	1	1	3	5	3
CTGCTTCGTGGTTATT	ref_5655_new	3	5	4	2	6	0	4	4	4	1
TCAAGGCAGGAGATAG	ref_5655_new	28	43	27	26	42	41	61	38	51	37
TTTGTCGCCGCAATAG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TTCCCCGATTTTCCCG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GAGTCTCCATTAAGGC	ref_5655_new	38	53	74	30	65	41	61	24	70	39
TATGGGAAAAAACTGC	ref_5655_new	73	145	69	66	132	70	135	66	126	77
TTTGTGACTTGGATTG	ref_5655_new	69	96	72	78	78	40	117	56	116	54
TGATTCACGTTGCACT	ref_5655_new	0	7	1	2	3	1	6	0	4	1
CTTGAATAGTGTAATA	ref_5655_new	0	0	0	0	0	0	0	0	0	0
AGGCCGGATTGGTATT	ref_5655_new	4	3	5	1	9	3	3	3	7	2
AGTGTTCACCTAGACC	ref_5655_new	32	58	24	21	46	27	63	22	81	29
AAATCAGTTATACGCG	ref_5655_new	10	11	7	5	10	6	20	9	12	12
GGGATCACAAAGTTGG	ref_5655_new	14	25	23	20	35	18	41	15	39	24
GTTCGCTTCTGGTAAT	ref_5655_new	14	25	16	13	19	16	19	18	19	12
CCGTGATGGACGGCTT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GTATTCGTGGGCCTTA	ref_5655_new	0	0	0	0	0	0	0	0	0	0
CCCAGGTTATTGGTCT	ref_5655_new	9	23	8	12	23	17	20	11	17	9
TCCAGAATTCTATCTG	ref_5655_new	8	16	17	9	38	10	19	14	26	6
TGGCTAATTCTGCACT	ref_5655_new	12	17	10	14	19	7	18	7	17	13
TGATATTTGGTCGGAA	ref_5655_new	2	0	2	3	5	1	3	1	2	0
TTTGAACACCAGTTGG	ref_5655_new	20	28	22	15	27	16	32	18	27	11
GGAACATGTGGCCCCG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GAGACTCTACCTCTCA	ref_5655_new	5	2	3	3	9	6	5	1	6	4
TACCTGTCACAATGCT	alt_5655_new	4	19	6	4	17	4	17	3	17	1
GAACCTTCGGAGTTAG	ref_5655_new	13	22	9	8	22	12	26	9	24	9
ATCAGGCTATACATAC	ref_5655_new	13	24	13	5	34	15	25	18	28	7
TATTGAACAGGAAGAG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GGAATGTTGGAATACA	ref_5655_new	0	0	0	0	0	0	0	0	0	0
CGAGTATGGCACACAG	ref_5655_new	21	33	27	26	37	16	27	24	43	24
GGAAGGCCCTTTTCGG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
CCATGTGGTAACATGA	ref_5655_new	33	71	48	31	58	39	51	24	72	24
CAGCTCTAACAGGCGA	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TAAGTCCTTTCACTCT	ref_5655_new	9	21	16	8	18	15	16	9	15	8
CTCTACTACAGGGTAC	ref_5655_new	78	145	79	74	124	48	147	58	144	61
CTACAGCGACAGTTCC	ref_5655_new	16	45	40	26	33	23	39	26	53	20
CCTAGGACCCATCTTT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
ACCTCAAAGTCGGTTT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TGGATTTGATCTCCTG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
CGTGGTTAATCAGACA	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GAGCACGACGAGTTTT	ref_5655_new	19	24	24	16	18	9	31	16	34	17
GAATATACTCGCATGA	ref_5655_new	3	7	8	13	11	6	17	6	7	12
CCGCCAGATTATCTCG	ref_5655_new	2	13	4	3	14	9	30	6	14	4
ATATGGGGACAGAAAT	ref_5655_new	6	5	4	3	6	2	11	6	3	3
AAAAGCATACCCAGCT	ref_5655_new	57	104	53	60	90	72	102	52	120	50
CGATACCCAATCCACG	ref_5655_new	8	16	6	2	16	8	15	5	15	5
CATGTTCCCCTATTTT	ref_5655_new	7	10	12	6	12	8	20	13	15	9
CCCGTTCCCGAGGTAT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GTTAGTACGTGGGATT	ref_5655_new	32	59	51	36	51	32	69	29	65	33
TAGTCTGTTTGTCTGT	ref_5655_new	5	21	10	11	12	6	18	10	13	6
ATGTTTTGGGCCGGCG	alt_5655_new	33	42	23	26	40	32	52	35	56	36
GGGTTTGGTTCGCCGC	ref_5655_new	6	1	2	4	2	6	6	3	7	5
GGAACATGTGGCCCTG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TGAGTGAAAGGTTACC	ref_5655_new	20	39	22	10	24	11	37	7	31	15
CCTTATGCATTGGTGT	alt_5655_new	162	431	143	145	495	125	495	149	506	130
AAAATCACGCTTAAGT	ref_5655_new	12	21	22	21	35	18	39	10	33	14
CATTTGAGGGATCAGC	ref_5655_new	0	2	2	0	4	2	3	2	4	0
CTCCAGAAGCCCTCAT	ref_5655_new	5	8	6	6	8	3	16	10	18	6
CCAATCGCGATTACTT	ref_5655_new	54	120	77	69	130	61	134	52	135	66
TCTTCGCAATAAAACT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TCAATGCACGGACACT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GGCACTGCACCTGAGG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GGAGCCCGGCATACTC	ref_5655_new	18	25	20	24	23	29	35	15	33	22
ACCAGTCAAGCATCAC	ref_5655_new	0	0	0	0	0	0	0	0	0	0
CATCTGGTGTCGAGTG	ref_5655_new	7	18	7	6	13	2	15	5	17	7
CTTGCAATCCTTTGTC	ref_5655_new	15	24	17	16	38	22	33	28	20	20
AGCGGATAGTCTATAC	ref_5655_new	24	37	14	32	33	20	33	14	40	21
TATCATCTGCAGGGTA	ref_5655_new	8	8	13	7	23	10	16	9	22	8
TCCGAGATTCAGGACC	ref_5655_new	14	14	16	4	25	9	14	4	17	9
CAAATAATATTTTTTG	ref_5655_new	16	23	15	16	42	13	36	17	25	23
TGTATTGGCATTCGAC	ref_5655_new	19	41	43	30	47	32	58	27	59	24
TAATTGCTTGCAACAG	ref_5655_new	0	0	0	0	0	0	0	0	0	0
AACTCCAATTGTATCG	ref_5655_new	8	20	13	12	15	4	19	5	24	8
TCAACATGAACCTGTA	ref_5655_new	18	55	32	27	51	20	44	28	47	28
CTTAGCAAGATGTAGA	ref_5655_new	39	81	51	47	81	42	95	47	95	32
CTTTCCGGAACTCCCT	ref_5655_new	13	30	16	12	33	19	30	12	41	12
TTTCTTACAAGACCTT	ref_5655_new	19	18	6	9	18	16	27	11	26	10
GCGTTTAGTGGAAGTT	ref_5655_new	1	13	4	8	12	8	12	5	14	9
TCGTTCGGAGCGATCT	ref_5655_new	37	81	64	44	74	36	69	38	69	34
ACCGATTTTGAGATTC	ref_5655_new	2	13	2	0	15	0	11	2	22	1
GTCTACCCTATTCTCT	ref_5655_new	5	9	5	3	8	7	15	8	8	9
CAGGTAGATACCTGCA	ref_5655_new	44	63	68	75	98	72	101	61	97	59
ACTATGTCCAGCCCTC	ref_5655_new	24	62	35	31	65	28	69	35	51	35
TTTATCACGCCCGGCC	ref_5655_new	19	38	36	27	50	15	40	32	53	26
ATGGCAACTCCGCTCT	ref_5655_new	0	4	5	9	8	4	6	2	3	2
TCGGGTCGTTAGAGGC	ref_5655_new	0	0	0	0	0	0	0	0	0	0
ATTAAGCTTTGGCTGT	ref_5655_new	0	0	0	0	0	0	0	0	0	0
TGTATTGGCATTCGCC	ref_5655_new	0	0	0	0	0	0	0	0	0	0
GACTTGCTTTCTGAAC	ref_5655_new	34	59	40	36	75	36	74	44	65	25
ACTCAGCGTGAGTGCA	ref_5655_new	40	67	46	36	78	30	64	40	75	50
ATATTGCTTACTCCCA	ref_5655_new	6	9	6	4	15	8	16	8	14	10
TTATACGGTCCGGGCC	ref_5655_new	0	2	0	2	1	3	1	3	1	0
ATCAGTTAGTTTGAGG	ref_5655_new	5	9	9	9	8	4	4	1	16	1
ATGAAACGTGCCGGTG	ref_5199_RC	141	91	139	156	82	138	80	155	56	121
GGCAATGTTTTATCTT	ref_5199_RC	414	259	509	482	245	393	262	408	286	336
GCTACGCACGTGGCCC	ref_5199_RC	79	59	103	111	70	43	55	73	65	58
CAAACACTTAACCAGT	ref_5199_RC	22	9	12	22	15	14	9	22	22	21
GTTTCGATTTTAGGCT	ref_5199_RC	39	23	39	39	16	28	32	38	21	25
TTTATTGTGTACAACG	ref_5199_RC	11	5	18	13	9	17	18	18	7	8
CTACGCTGGCAAATAA	ref_5199_RC	25	17	41	26	15	22	16	28	25	27
ACTATCAGACTTATAC	ref_5199_RC	69	47	76	59	46	65	35	59	42	54
TTATCAACCCTTACAA	ref_5199_RC	6	6	6	13	8	7	4	1	6	4
AGTGTAAGGCATGAAT	ref_5199_RC	26	10	29	27	20	41	20	21	26	22
GAGGACTGACGATCAA	ref_5199_RC	14	14	12	12	18	14	9	18	9	21
TGCGTCGAAGCGCATT	ref_5199_RC	85	79	100	109	82	89	82	89	111	78
TTTGTTAGGTCTCAGT	ref_5199_RC	11	9	23	16	9	18	14	13	9	8
GATCGCGTTTCTGTAT	ref_5199_RC	15	19	33	24	13	36	20	34	32	27
CTTCGTACTCGGCCCT	ref_5199_RC	51	53	103	85	54	63	45	75	43	71
TGTCACCCGGGCTTAG	ref_5199_RC	9	5	27	10	19	20	7	12	12	8
CACTCCCCCAGACAAG	ref_5199_RC	1	12	0	1	11	1	14	0	4	0
TACGTTTCTTCGGCTT	ref_5199_RC	9	4	17	14	6	9	4	10	9	4
AAAAAATTTGGGGCCT	ref_5199_RC	26	10	23	13	12	19	6	15	16	20
GCAGGAGCCCGATCGA	ref_5199_RC	14	4	12	7	6	8	12	6	6	4
TCATTTTACCCATAAT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CAAACTTGCACCTAGG	ref_5199_RC	114	71	120	120	78	106	87	91	107	102
TTAATCCAACGCTGAG	ref_5199_RC	50	49	72	50	57	54	43	58	52	56
GGTCGGCCATCAGGGC	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CATTTCCATCAACCCC	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CATATCGTTAATGGAG	ref_5199_RC	14	11	21	16	7	25	13	15	11	11
CTGACGAAGGGCTGAC	ref_5199_RC	31	49	92	40	41	53	50	42	46	45
GGTTACATTTATAGCT	ref_5199_RC	11	4	10	7	3	6	6	8	3	2
TTTGTCACGGCCGCGT	ref_5199_RC	44	34	62	44	42	42	36	39	29	54
TCCTAAAATTACCCTT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TACCCCCAAAGTCATT	ref_5199_RC	134	94	181	112	96	136	124	129	110	130
TCTACGTACGTTGCTT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CGGATCGCCCTCCGCC	ref_5199_RC	42	22	32	35	35	34	27	27	25	31
CTGCTTTTAAATGCGA	ref_5199_RC	9	5	5	4	3	5	9	7	1	5
TTTTTATTCCGGTTGA	ref_5199_RC	104	84	123	122	62	94	67	103	79	67
AATTAATGGTACGAGT	ref_5199_RC	13	6	31	17	7	17	11	11	8	16
CGATTGTTTAGTTGCT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
AGGCAGAAGTGAAGTA	ref_5199_RC	75	40	51	50	33	57	44	45	29	66
TGCTTTGAGTTAAGCC	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GGCGTATTTATTCGAA	ref_5199_RC	62	49	46	59	52	51	53	48	48	51
GTTCCGTTATACGTTT	ref_5199_RC	16	19	24	24	11	19	9	15	17	12
TTATTACTTTACCGTT	ref_5199_RC	45	38	63	60	40	57	35	58	47	57
CGCATTCTTCGCTAAA	ref_5199_RC	396	231	548	418	258	391	253	434	296	336
TCTGATTTTGGGGGTC	ref_5199_RC	85	56	78	91	43	87	61	79	54	65
CTCGTAGGACTTAGTT	ref_5199_RC	96	59	117	103	66	100	83	72	76	79
ATCTATCTTCGTCTTG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CTGGCTCACTTGCGAG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TCGCATTATGGTCTCG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CCTCCCTTGTCCATAT	ref_5199_RC	66	43	57	49	38	50	47	53	43	50
CGGGAGAAACCATCTC	ref_5199_RC	63	39	77	84	43	58	57	62	44	56
GACATCCGCTTAGTAG	ref_5199_RC	48	23	41	42	37	40	26	54	25	40
GTGCTGGCTATGGTGC	ref_5199_RC	37	31	59	58	37	36	33	39	44	39
AAATGGCCAGGTCCCT	ref_5199_RC	7	7	11	6	2	14	9	17	10	8
GCTACCTAATTCAAAA	ref_5199_RC	63	47	60	50	46	68	55	38	51	45
AGATTTTGAAGATAAG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TATAGTTGGCGTGAGC	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TTGTTCTTACATAGCG	ref_5199_RC	15	7	13	13	8	12	10	8	5	13
TTTCAAAGTCATTTCT	ref_5199_RC	36	25	40	41	40	42	40	42	30	45
CTCAAGTCAAATATCC	ref_5199_RC	15	18	18	29	13	22	11	17	13	14
GATTGTGCTATCGTCA	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TTCCACAATAAATCGT	ref_5199_RC	54	33	49	56	37	50	33	61	38	55
GCACCATGGAGGTTTG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
AAGGATAATCGTTGCG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TGTAATTAATAAGTCT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GACCCTGCCAACCGCG	ref_5199_RC	69	43	62	50	50	61	64	66	44	46
TTGTGTCAAATCTTAA	ref_5199_RC	43	34	56	48	29	50	31	39	48	37
GTTGCTCAACCGCTCG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TTCTCCTGCTGTTCCT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GTACCATAGGGCACTA	ref_5199_RC	57	54	73	76	48	41	47	61	43	74
CAATCGGCAAAGTCAC	ref_5199_RC	255	160	300	258	204	260	159	248	149	194
AGAGTATTTTCAATGC	ref_5199_RC	52	55	89	84	69	79	53	59	54	58
GGGTACAAGGCTCGGG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CTATACTTCACTGAGG	ref_5199_RC	20	18	33	19	20	16	23	27	22	20
AGAGAATTTAGACCGT	ref_5199_RC	60	42	108	71	54	70	51	81	40	40
TGGGCTTGTGTTCTAA	ref_5199_RC	39	33	43	36	28	41	26	38	39	28
CGGTGACCCTTTGCTC	ref_5199_RC	28	31	29	31	32	33	31	23	23	20
GGTAGTCACTTATTGT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GAATGGACCGAAATCC	ref_5199_RC	39	26	53	48	31	47	26	53	31	37
CTTTGGGCTCACATTG	ref_5199_RC	152	92	177	134	87	124	100	132	100	117
GCTAAGACTTCTACAG	ref_5199_RC	80	71	105	96	51	69	65	85	67	75
TACAATCAATCTTTAT	ref_5199_RC	172	108	197	188	110	148	125	175	114	129
TCGCTCTTGAATCTAT	ref_5199_RC	102	71	126	140	60	106	90	96	64	81
TTAGCTCCGCGGTGTT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
ATCTCTCACCACTTCG	ref_5199_RC	82	56	93	64	70	78	46	65	62	86
AAGGTCTTCGTTTCTA	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
ATTCCGCACTTACAAG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GCATTTTACTTCATGA	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CCCGTACACACCCTGT	ref_5199_RC	18	35	24	33	25	32	33	12	41	24
GCTCAGGCGGTGTCTT	ref_5199_RC	0	0	1	0	1	0	0	0	0	0
CGGGTGTGTTTCGCGG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CGGGTCGGAATGTATC	ref_5199_RC	26	20	29	24	25	20	14	23	23	13
ACGACTATTTGTGCCA	ref_5199_RC	41	19	30	35	29	40	21	27	29	23
TGGCATAATGCGCGGG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CATGATGTCCTTTTCG	ref_5199_RC	332	242	413	340	210	322	208	320	223	268
CAGCTCTAAGGAGCAG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CCACAAATTGCGATTT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TCTGAGCTATTGGAAC	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GCCTGACTCTATTCTG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GGACTCGATTAAGTCT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GTCGCCGGCCGGGCGA	ref_5199_RC	27	33	51	44	43	26	31	37	39	33
TTTGTACGACTCTGGG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CACTTTTGGTTACATG	ref_5199_RC	28	20	32	32	23	32	19	27	33	28
AATGACTCGCATGCCC	ref_5199_RC	24	60	38	40	44	31	47	18	57	33
CGTGAGTTGCGAGGTC	ref_5199_RC	71	47	94	79	45	71	65	81	68	73
GCAGGAACCCTTTTCC	ref_5199_RC	32	21	38	25	22	24	22	36	25	24
GGGTCAAACGTTCGGA	ref_5199_RC	58	35	50	53	38	32	25	65	24	46
CTTTTGAGTCGGAGCT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
CCGGGTTTTGGGATAT	ref_5199_RC	118	120	175	168	95	148	125	155	113	126
TAAAATATCCGGTCTG	ref_5199_RC	13	15	26	10	13	16	16	14	18	18
CCCGCGACTTTGTTTT	ref_5199_RC	8	16	14	15	8	13	17	7	14	12
CGGGTCTAGAACAGTT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
ACACTGAATGAATCCC	ref_5199_RC	77	62	84	82	48	82	74	73	53	58
TTTCATGGCCATACGT	ref_5199_RC	24	7	33	31	16	31	24	13	26	21
CGTACCGTCACGTACC	ref_5199_RC	16	13	15	11	12	15	15	14	13	18
GGTGTATATCTGCCTT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
GATGTATTCGTGGGGG	ref_5199_RC	16	9	14	17	9	13	11	8	19	14
TTTATCCCGCTCAGTT	ref_5199_RC	368	251	448	345	225	299	221	356	246	284
GGTTTCAAGCACCTCA	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
AAGTACCATACGGTTA	ref_5199_RC	60	50	73	77	48	49	74	88	49	71
TCCATGTATCGTTCGT	ref_5199_RC	62	39	75	58	33	47	44	63	49	46
CTGCCTCATTGAATGG	ref_5199_RC	3	5	8	3	7	3	6	10	8	1
TATCCCTTCATTTGTG	ref_5199_RC	233	99	272	209	125	223	127	210	141	193
TTTGATCTTGGAAAGT	ref_5199_RC	31	17	36	31	20	25	15	32	30	33
GGCCACTTGGTTACCC	ref_5199_RC	21	11	31	22	15	25	12	15	16	13
TTAGATTCACACCGGC	ref_5199_RC	133	76	184	132	66	94	86	147	77	90
ACGGCCGTCAGCGGTG	ref_5199_RC	38	44	64	62	44	62	49	53	53	43
TTTCTAAGACTGGTGG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
AAGTCGCCGACTATAT	ref_5199_RC	170	118	182	164	80	159	133	124	103	128
CGGGCAGTGTTTAGTG	ref_5199_RC	2	3	4	4	5	3	4	2	6	4
ATGTCCTGCGCGATAC	ref_5199_RC	33	16	28	30	20	30	15	19	9	21
GTTGAAGCGAGCTTAT	ref_5199_RC	37	22	59	45	44	44	44	43	27	30
ATCCGCTTTTCTCGGG	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TCACTATCTTACTTAG	ref_5199_RC	56	28	70	60	47	55	38	46	35	56
GAGCGAGGACTGTTTT	ref_5199_RC	0	0	0	0	0	0	0	0	0	0
TGCGATATTTGTCGCA	ref_5199_RC	31	18	33	29	23	33	17	22	14	21
ACAATTGAAACATGTG	ref_5419_fdr	126	156	166	116	135	106	136	133	146	120
CGTGCGCTAACACACG	ref_5419_fdr	102	131	121	101	102	88	113	108	108	88
CTTTTCGACTGTTATC	ref_5419_fdr	14	28	7	2	34	4	23	11	33	3
GAGCTGTTAAGGAGAC	ref_5419_fdr	131	115	144	134	136	121	124	119	159	112
TCAGCTTCGTAGTCTT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCTATGAAGGGGAAAT	ref_5419_fdr	18	24	23	28	26	18	28	32	30	17
TCGAGGCTCCGGTATC	ref_5419_fdr	28	18	36	32	29	29	32	25	24	29
GACCTAAGTTGACTGC	ref_5419_fdr	28	38	30	23	37	29	28	19	28	24
AGCATCGTTATGTGGC	ref_5419_fdr	45	48	55	54	67	42	61	51	49	42
TGTTTTCCAATAGGTT	ref_5419_fdr	8	7	16	13	14	11	8	10	10	6
CTATCATCGAATTGCC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TACGGTAGCCTCAGCT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTGGTTGAACGC	ref_5419_fdr	83	84	98	81	135	64	105	70	117	72
CTGCCGCGGCTTCGGA	ref_5419_fdr	184	212	216	167	241	200	250	165	231	181
CGATTGTCCTGAACCG	ref_5419_fdr	1	5	6	6	8	3	2	1	2	7
TATACCAGCATGACCC	ref_5419_fdr	5	5	4	3	11	7	6	4	8	3
AGATCTGATGGGCGCT	ref_5419_fdr	36	51	63	43	43	29	45	45	36	26
CGCTCTCGTAGGGTCG	ref_5419_fdr	36	55	61	36	62	43	71	51	44	51
AACTTTAAACGTAAAA	ref_5419_fdr	7	8	7	9	10	15	5	5	4	7
ATCTGTCTGTTAAGAT	ref_5419_fdr	60	92	68	61	82	83	94	53	113	59
GACGCACCCATAACGT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTTGTCAGGTAC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCACACTTTCTACCTC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
ACATGAGCGCTACTGT	ref_5419_fdr	13	8	17	19	5	16	6	12	6	11
CCTGTAAGGAGGTCGA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCGGTCTGCTCGT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
AGTATTATGGATGCTA	ref_5419_fdr	38	39	44	41	36	47	50	29	33	31
TTTTTGTTGTTCCTCT	ref_5419_fdr	24	20	24	13	17	20	11	17	11	15
CTACCTGAAGCCAATG	ref_5419_fdr	26	23	41	11	22	17	20	15	20	27
GTTGTAACCAACCACG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGGTTAATCGGCA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTGTTATGAAAC	ref_5419_fdr	6	8	4	8	4	3	4	4	3	10
TAGCTCAGAAGGATAC	ref_5419_fdr	11	16	11	9	17	11	8	8	16	7
CGTGTATTTCTTCCGT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCGTAGTCCACCT	ref_5419_fdr	30	29	32	33	35	35	33	29	46	31
GAAAGGGCCTTTAGGA	ref_5419_fdr	26	43	35	28	39	29	34	32	45	32
AATTAATGGGTCGAGT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTACATGCTGGTG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGGGTAAATATCG	ref_5419_fdr	2	3	2	3	1	3	4	2	3	2
CTGTGAATATTGCTAC	ref_5419_fdr	7	19	15	4	16	15	15	8	14	11
TTGGCACTTAATTCTA	ref_5419_fdr	61	71	77	74	70	76	87	72	99	61
CTATTGCGCAAACGCG	ref_5419_fdr	64	56	84	68	63	52	73	66	102	49
GATTGAATGTGTTTAT	ref_5419_fdr	62	64	56	57	54	58	50	45	54	51
TTCCGTGCCTACAGTG	ref_5419_fdr	71	81	72	69	60	81	95	61	92	62
GCGCGATATAATCGGA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
AGTGATTGGCCCACTG	ref_5419_fdr	9	14	20	18	21	26	22	18	20	20
ACGGGAGTCGATACAT	ref_5419_fdr	8	10	11	5	2	8	5	4	9	1
GACGACGAGTTTTAAC	ref_5419_fdr	15	13	32	16	31	19	24	17	15	18
CGCGTCATGCGTTAGT	ref_5419_fdr	87	123	138	116	141	88	130	113	129	98
AGTCTCGCTCTCGGCT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTATTTCTAGAAC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAGTCCTATAAAC	ref_5419_fdr	100	103	129	103	127	104	124	95	122	62
AGCTGCGAATATAAAG	ref_5419_fdr	14	8	14	15	13	10	16	13	14	12
ATCGGTCCTTGACGAT	ref_5419_fdr	26	28	34	25	22	17	29	23	21	29
TCTCGGTGTCCATCTA	ref_5419_fdr	11	8	10	16	21	7	10	5	15	3
ACACTTGGGAAACTTT	ref_5419_fdr	7	11	13	17	13	13	18	10	13	15
GACGTGTGATATCGTG	ref_5419_fdr	27	34	16	36	26	26	37	30	28	29
TGTCATACACCGCTGC	ref_5419_fdr	5	12	9	11	6	10	10	5	11	2
TGTACAACGCATTTTA	ref_5419_fdr	7	6	10	5	5	13	12	2	11	10
AGGATCACGTCAGGGC	ref_5419_fdr	25	25	23	28	37	22	28	27	32	32
TTACACTTTGCGACAA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCATTGGCCGTGTATG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCACAGTGTGTCGAGT	ref_5419_fdr	3	12	3	7	7	6	11	5	14	5
ATCAGTGCTTTTTGGT	ref_5419_fdr	4	14	8	4	12	8	13	7	10	8
ACATTTCTTGTTTCCC	ref_5419_fdr	252	248	280	225	231	260	298	199	250	202
GGTGCAGTCCTTGCCA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GAGGGATAAGGGATTC	ref_5419_fdr	15	9	13	17	14	14	12	11	12	9
CTCATTAACAAGAGCC	ref_5419_fdr	16	25	15	18	5	16	21	16	16	16
ATTGTTCTCCGAGTAA	ref_5419_fdr	37	45	38	42	52	38	54	46	42	29
TTTGTATTTGAGAGAC	ref_5419_fdr	10	6	16	7	14	7	5	7	21	6
AGGCTCACCAAGGTGC	ref_5419_fdr	13	20	19	19	9	17	20	18	15	15
TTAGAGCGTCAGCTAA	ref_5419_fdr	35	43	41	40	46	36	44	40	48	38
CACCCGTGCCCGTCTT	ref_5419_fdr	17	22	26	21	22	21	15	15	24	20
TTATTCCTTGGGCACA	ref_5419_fdr	4	13	19	9	14	13	17	5	11	13
ATGCCATTCACCATTG	ref_5419_fdr	19	17	26	14	28	9	25	15	19	8
CTGTAAGTCAGCCAGT	ref_5419_fdr	25	39	30	24	42	35	52	21	39	33
TTTTTCTGAGTCATTC	ref_5419_fdr	32	25	24	25	25	21	35	37	25	24
AAAATGCTGCGTACAC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGCCAGGTCATGT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCACAACCTGTGTGTT	ref_5419_fdr	144	194	214	187	233	152	207	191	255	138
GTCTTCTACCGCGCAG	ref_5419_fdr	23	29	50	42	42	30	34	15	29	24
AGCCGGCGATCATTAG	ref_5419_fdr	10	25	22	14	22	21	25	15	23	24
TCGCAGGTTCTATGGA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGCTGTTCAGTGG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGCCTTAGTCAGG	ref_5419_fdr	35	52	38	36	53	37	64	29	48	46
TCTCGGTTTATCGCCT	ref_5419_fdr	17	16	15	12	16	12	15	10	16	9
ACTATCCCCCTTACAT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCAGGAGTGTAAC	ref_5419_fdr	87	113	132	89	124	72	109	83	125	98
CGCGTATATCGGCTAG	ref_5419_fdr	18	18	24	13	12	11	22	23	24	16
CTCTGAACTGAGATCC	ref_5419_fdr	16	38	29	36	34	23	37	23	29	22
GCCACAGATCGAATCA	ref_5419_fdr	39	35	54	71	61	49	51	29	56	45
CCCTTGTGACTCTCGC	ref_5419_fdr	7	5	0	5	3	4	7	4	3	2
GGTCGGTCGCCGTAAA	ref_5419_fdr	10	12	13	16	12	11	7	2	13	7
CCCGCCGTAAAATTCG	ref_5419_fdr	10	98	15	15	89	8	82	4	119	14
TCATAGGCCAAGGGCG	ref_5419_fdr	11	12	20	21	15	16	10	15	24	8
CTCGGTGAATATTGTG	ref_5419_fdr	41	56	52	26	65	29	85	40	57	20
GTTAGGCCCCTCAAAT	ref_5419_fdr	45	36	51	57	48	51	41	35	57	34
TTCGACACAGCCAAAA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
ATATTGTCCGTTTCAA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCTTAGCATTCGCCGG	ref_5419_fdr	2	0	4	1	1	0	3	4	5	1
GTCCTTGGGAGAGCAC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCTTGTAGGCAAA	ref_5419_fdr	12	16	16	17	28	13	16	12	15	19
GTTCCGGTGTCGGTTT	ref_5419_fdr	20	17	21	15	19	12	16	11	21	15
TTGCCCGTATTCATTT	ref_5419_fdr	15	11	12	16	10	13	18	11	19	11
TGGTCTCTAGGTCTAT	ref_5419_fdr	22	34	38	29	41	27	35	28	28	18
CGACAAATGGATATTG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GTCTATGTCCGACATA	ref_5419_fdr	112	103	109	109	87	87	109	85	115	84
GATCTGCTTGAGCTTA	ref_5419_fdr	185	216	236	180	253	183	202	181	244	181
CGTGTCATGGGCAAGA	ref_5419_fdr	41	87	51	50	67	40	72	50	75	35
CTCTGCTTTAGGATGC	ref_5419_fdr	104	120	114	94	127	101	158	109	165	75
GGGCTTCGAACCATTA	ref_5419_fdr	16	25	24	8	22	18	26	17	28	19
CCAATTCTCGGTTATA	ref_5419_fdr	6	8	2	2	2	3	0	2	1	1
CCCGGGGATATGAGGC	ref_5419_fdr	8	8	6	9	4	2	9	7	7	5
ATCGCTAGTCTTGTGC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGTGTCTGTCGTA	ref_5419_fdr	67	82	76	49	70	70	76	51	114	58
GTATTCATCTCTCCCG	ref_5419_fdr	134	193	191	137	222	142	196	141	164	131
GCCTCCCCCATCCTTT	ref_5419_fdr	58	75	76	74	63	70	82	67	69	53
GTCCGGCCTAACTAGG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
ACTTATTGCTTTGACA	ref_5419_fdr	18	26	23	18	16	13	37	13	38	11
CTTTACGTATCGTCTC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
ATTCAAACGCGTCATT	ref_5419_fdr	21	29	37	26	27	16	26	14	23	28
GTGAGGCGGTCGTGCG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTGCGTGTCTCTC	ref_5419_fdr	234	302	262	262	289	252	290	211	318	172
GCCTTTTGCAACGGTT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCTCAATTACGTG	ref_5419_fdr	37	40	58	44	54	64	38	48	50	45
TGGCCAGTGATCGGTT	ref_5419_fdr	38	46	35	39	37	33	50	29	37	26
GGACTTCGGTTGAGCG	ref_5419_fdr	63	48	57	40	53	38	68	36	53	39
GTCCATCGCTATAGGT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TTGATATAACGGATCA	ref_5419_fdr	31	38	30	18	38	25	48	26	47	33
CCAACTGACGCTTTTA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CAGAACGGAATGGTCA	ref_5419_fdr	34	32	39	40	38	35	36	36	37	37
CTTGTACCCGGCTTAT	ref_5419_fdr	37	52	47	50	59	31	38	32	63	43
TTCTGTGTTCGGGCCT	ref_5419_fdr	73	93	97	78	106	83	114	83	95	76
AGATGACCTATACCTT	ref_5419_fdr	17	14	28	35	22	26	28	24	32	19
TTGCGCAGTACTAAGT	ref_5419_fdr	9	21	10	12	12	11	18	18	12	8
TTATGATGCTATGTTA	ref_5419_fdr	71	76	68	66	76	39	83	37	73	56
ACAACGGTGACGGATC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCGACGATCTATGTAA	ref_5419_fdr	34	31	38	51	45	40	44	50	51	31
CCTGCTTTTCCAGCGC	ref_5419_fdr	8	15	7	13	9	5	13	5	10	6
AGATATACACCTCTTT	ref_5419_fdr	14	13	15	17	18	9	8	5	17	4
CCGCTGTTCCTGCAAA	ref_5419_fdr	15	19	6	14	21	13	16	3	7	11
ACTGGCGAGAGTTTGG	ref_5419_fdr	4	2	7	5	5	3	3	4	3	5
TACGCACTGTGTTTTT	ref_5419_fdr	18	41	30	24	25	25	29	18	41	24
TCGATTATAACACTGC	ref_5419_fdr	11	8	15	9	8	6	8	11	13	12
TTCTGCATAGGCCGTG	ref_5419_fdr	42	60	66	44	55	54	72	62	49	47
TTATTTGTGTTGTCCA	ref_5419_fdr	6	11	12	6	14	2	9	5	18	4
ACTGCGCAATAACGAG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCACTAGCTTGTT	ref_5419_fdr	71	68	78	42	85	60	95	59	92	46
TCGAGACTCCCTGTAT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCAGACCCGAATGTCT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTGTACTTAATTC	ref_5419_fdr	36	38	37	20	49	23	31	32	45	30
TGGGCAGCTGCTGTCC	ref_5419_fdr	69	93	68	46	77	84	80	74	81	56
AAACGAGCGCCCGATT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTTTTTGGTCTAG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGTAATTCTTCGG	ref_5419_fdr	38	37	45	28	31	22	32	39	37	31
CCTTGTTAGTCCGATC	ref_5419_fdr	24	25	37	29	32	17	24	22	32	19
AGCCGTAGGGTATGGG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTAGATTCAGAGA	ref_5419_fdr	11	12	9	12	15	8	6	12	13	14
TGTCTTAGAAAGATTT	ref_5419_fdr	28	29	63	31	31	37	47	23	38	31
ACTGCTGTATCCCAAC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TAGGAGTACACGAACT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTGGTTGGTTGCT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTCGCTTCACAAA	ref_5419_fdr	41	39	41	48	44	41	44	33	49	38
GCCATCTTCATTAAGG	ref_5419_fdr	110	112	137	117	116	93	124	105	114	119
AGCTCTGACCGCAAAA	ref_5419_fdr	23	12	24	18	14	11	18	15	12	15
GGTAACATCCGAGTCG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGCGTTCGGTTCC	ref_5419_fdr	55	52	46	50	47	58	61	63	67	44
GGTTCGGGGTGTTGAC	ref_5419_fdr	2	3	2	5	1	3	6	1	4	2
TAATGGTTTCACCGTT	ref_5419_fdr	5	5	1	5	0	8	3	2	4	2
CTCCTAACTTCGCCCT	ref_5419_fdr	13	20	8	8	5	7	13	7	22	11
CTTGAGTATGATTTTA	ref_5419_fdr	142	172	154	158	191	155	176	135	157	138
CTATTTAGCCGACATA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CAGACAGGGATCCAGA	ref_5419_fdr	13	14	19	11	15	12	21	9	14	5
CTCTCTGCATATGCAA	ref_5419_fdr	37	66	36	36	68	38	70	42	75	42
GCCAGGTAAGTCTCTT	ref_5419_fdr	3	3	12	4	4	1	13	1	5	7
GGGACCCAAATGTCGG	ref_5419_fdr	108	164	149	145	187	132	188	150	145	142
AGTGATTACTATCCTT	ref_5419_fdr	3	3	10	4	3	3	6	11	6	9
TGCAAAATATAGGGCT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTTCACCACAAAG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCCCCACAGTTGGTAC	ref_5419_fdr	12	13	14	13	8	6	19	15	8	15
AGGCTGCATAGGGGAA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGCTTAGTGAAAT	ref_5419_fdr	7	6	8	10	14	14	12	11	8	6
GGGATGTGCGCGTCCC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
AATTTGGGCCTAAGAG	ref_5419_fdr	121	134	171	137	148	122	159	121	145	128
AGCTATCTGGTATTTC	ref_5419_fdr	17	5	18	11	4	13	8	10	6	17
TCGTGTCCTTTTGAAG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCCCTTTTATATC	ref_5419_fdr	3	14	2	1	14	6	14	1	18	0
TCCCGTCCTCCATGCT	ref_5419_fdr	20	31	18	13	31	17	34	9	38	12
TCGAAGAAGGTTGCAG	ref_5419_fdr	6	10	17	17	6	4	17	4	8	6
TATTTAATTTTTTTTT	ref_5419_fdr	0	0	0	0	1	0	0	0	0	0
GACCGCTAATCTTCAT	ref_5419_fdr	24	24	46	40	19	44	24	26	50	11
CATTCCTGTTTCGCGG	ref_5419_fdr	100	116	124	104	81	108	100	99	115	90
CTAAGGAGGATATCAT	ref_5419_fdr	46	78	59	60	70	54	59	71	56	52
TACCTCTGTTTCCAGA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCATAGACTATTT	ref_5419_fdr	37	92	50	52	54	39	84	53	76	40
TCTGATTAAATGTCTT	ref_5419_fdr	82	96	101	105	78	86	91	75	110	61
CATGTGGACTTATACA	ref_5419_fdr	11	6	15	19	11	22	14	8	14	10
GAGCTCATAAGCAGTC	ref_5419_fdr	31	33	32	40	42	31	33	25	52	33
TTAATCGGAATATTGT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCTGAGTGGCTGA	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CAGACGTCCTCCCGTG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGAGCCGTGGAA	ref_5419_fdr	152	213	214	185	221	144	183	161	207	167
CGGTGATCTTCTATTA	ref_5419_fdr	35	55	64	53	50	46	52	42	63	41
CCGATGAGACGCTGTG	ref_5419_fdr	5	20	4	7	16	6	26	1	13	3
TCGAAGGCAGATCAGC	ref_5419_fdr	36	41	32	27	29	37	38	38	27	27
GTTAATCCCAATTAGG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGTTGATTCCATA	ref_5419_fdr	109	110	127	98	124	109	126	89	125	98
CTGTGGCTCTGTGGTG	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGGCTTGTGACTT	ref_5419_fdr	27	20	30	37	47	20	27	27	39	22
AAAGTCTTCTTGATGC	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGCGGGGGATTTG	ref_5419_fdr	4	9	6	3	6	4	6	5	5	6
GATGGCCAATCTCAAT	ref_5419_fdr	72	82	99	84	79	76	108	82	104	89
TGTCTTGCTAGGTATA	ref_5419_fdr	24	24	22	11	11	18	11	15	12	15
TTTTCCCGGTTCAAGG	ref_5419_fdr	31	27	26	20	27	31	26	18	47	26
CTGGTTGTTTTGCTCT	ref_5419_fdr	0	0	0	0	0	0	0	0	0	0
GACGAGGCGTGGAGCA	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
AACGCAAAAGATGCAT	alt_2069_upstream	15	20	27	23	20	37	20	16	17	33
ACGAGCTATTAATGAA	alt_2069_upstream	27	23	43	30	22	26	30	37	20	19
ACCTTAGGCAGACATG	alt_2069_upstream	187	144	195	197	170	149	146	142	162	168
GCTTCCATAACTGGAT	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTTAATTCAGCCT	alt_2069_upstream	14	6	19	15	11	10	9	4	8	4
CGGTTGTCATCATCAA	alt_2069_upstream	26	14	35	21	28	23	28	19	21	22
AATTGGGGAGCCTAAA	alt_2069_upstream	233	188	271	218	195	203	226	206	201	190
GGTTGCTTGCCGTGTT	alt_2069_upstream	24	20	40	26	41	26	22	25	26	22
CCTCGAAGACTGTGCG	alt_2069_upstream	46	57	50	49	53	35	70	35	55	30
TGGTTTATTTTGATGT	alt_2069_upstream	13	17	27	10	27	17	19	26	23	26
TGCTCTTTCGGCCTTT	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCTGTCACGCGGC	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
ACCTAATTCGGGGACC	alt_2069_upstream	112	86	113	115	82	79	79	116	87	98
TCCTTTCGGTCGGGAA	alt_2069_upstream	28	33	24	46	29	26	21	16	19	14
AGGTCTCTCTAGTGCG	alt_2069_upstream	35	40	54	55	33	23	58	48	40	34
ACGCGGTCGCTGTCAC	alt_2069_upstream	19	35	22	21	43	19	36	20	61	21
TAGTCATATGCAGGCG	alt_2069_upstream	64	63	101	77	73	53	71	56	83	49
GTCAGAAAATTTCGCC	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
GTAACACTTTTCCTCG	alt_2069_upstream	39	26	34	31	41	22	23	21	25	23
GGGTGAGACTTCGCGG	alt_2069_upstream	16	10	14	19	18	16	10	22	26	17
AATTTCAAGGCTGTGC	alt_2069_upstream	50	64	86	75	61	68	67	42	63	50
GTGACGATTTCGCGTC	alt_2069_upstream	15	19	17	18	9	12	9	11	7	16
ACAAGCCTTATATGGG	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CAGCCGTCTCGTGCTG	alt_2069_upstream	7	22	6	6	25	5	26	8	30	0
GAGTTCTACTTCTTGG	alt_2069_upstream	137	133	155	138	133	108	121	109	145	95
GTCCTTTACCATGCTT	alt_2069_upstream	3	8	6	1	8	8	8	5	9	7
ATCCCCCTTTGTTGGG	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTGGTTCGCAGAA	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
ATATTTGCCCTTTGGT	alt_2069_upstream	11	5	11	21	7	6	8	7	19	9
CATATCGTAGAACAAC	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCGTATAAGGTTT	alt_2069_upstream	31	19	32	33	28	38	26	35	23	30
AGGTGTAATTCTGCTT	alt_2069_upstream	20	25	34	32	30	26	31	21	33	19
TATTCTTCCATATGTT	alt_2069_upstream	17	21	25	26	20	15	22	17	23	11
TCTGGAATCGGAGTCG	alt_2069_upstream	0	9	1	5	3	1	11	2	9	1
GACGAACCCATCCAAG	alt_2069_upstream	24	31	34	27	28	21	22	42	42	17
CTTTCTAGCTCTGAAA	alt_2069_upstream	123	112	164	129	129	130	154	123	140	99
ATTTGTCAAGCCATGA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GTTAAGTCTAATATCG	alt_2069_upstream	11	11	14	12	10	9	12	13	7	11
GGTTGTTGCTCCGTTC	alt_2069_upstream	30	24	43	24	32	35	25	23	12	29
GCATTTCCGTTGAAGC	alt_2069_upstream	18	12	17	16	7	13	24	22	15	16
CTGCGTCTTACCGCTA	alt_2069_upstream	12	18	25	19	21	15	19	16	16	11
CTGTCGAACTCTGATG	alt_2069_upstream	16	21	29	26	29	22	21	13	26	22
AATAGTTATTGTCAAC	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGGTGGTTCCTTT	alt_2069_upstream	207	208	227	193	213	200	238	215	208	169
ATGCCTGCCGTTTTAT	alt_2069_upstream	82	79	94	64	74	67	68	72	85	66
GTCGGATGTCCGCCTT	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CCGCATCGAGCATTGA	alt_2069_upstream	27	46	28	24	39	17	65	27	48	15
TATTGCTACTCGTAAG	alt_2069_upstream	38	32	52	55	36	44	49	29	45	43
CGAGAAGTTATACCTC	alt_2069_upstream	24	33	38	30	20	27	32	27	26	28
CGGACGTCGGTTATTT	alt_2069_upstream	17	19	31	20	26	29	16	29	33	15
TAAACAGGTGCCTGTC	alt_2069_upstream	64	58	61	76	68	51	55	48	93	54
GCGGCCGTCACTGCGC	alt_2069_upstream	1	2	3	2	4	5	8	1	6	2
ACACTGGTCAGAAGTT	alt_2069_upstream	20	30	23	28	28	26	14	16	36	28
CCGCCTCAGTGCAGGC	alt_2069_upstream	190	163	251	176	167	182	176	196	169	169
ACCTTGTCGATATTTC	alt_2069_upstream	12	7	6	5	13	6	12	6	13	11
TTGCCTTTGAAGAACG	alt_2069_upstream	17	16	17	20	13	15	19	4	11	10
CCATAGTGTGCTCGTA	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTGTGGGTCTAAT	alt_2069_upstream	6	14	11	19	15	16	9	11	11	9
ACCCAACCGTTAGCGT	alt_2069_upstream	4	10	11	4	12	7	7	7	5	6
TGACGTGGGCTATGAT	alt_2069_upstream	48	20	47	32	21	26	33	36	20	42
ACTTTGCTCTAGCACG	alt_2069_upstream	6	11	13	13	9	12	13	13	6	7
TGGAAGCCTTCATCGG	alt_2069_upstream	76	73	100	68	67	66	62	62	58	52
ACTCGGTCGAGCGAAG	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTGTAACTCAAAC	alt_2069_upstream	63	56	69	52	69	41	74	44	84	50
TCTAATCTATTGATGC	alt_2069_upstream	63	101	80	62	96	55	98	54	117	57
TCTCCTTCTGGTCGTT	alt_2069_upstream	51	51	70	64	61	53	66	49	65	55
TATTGATAGAAAAATT	alt_2069_upstream	26	14	16	21	16	22	6	19	17	20
TGATCGGCCTTGCTAA	alt_2069_upstream	29	25	41	32	28	19	27	33	27	27
ATCAGGTAAGTTAGTC	alt_2069_upstream	51	30	58	48	49	47	48	36	47	38
CCTGTTCTTTGCTTCT	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTTAAGGTATGGT	alt_2069_upstream	61	58	61	53	56	71	57	62	63	53
AGGACAAGCGTTTTCA	alt_2069_upstream	39	34	58	42	56	42	48	33	49	46
GCGTCTGCTACATTTT	alt_2069_upstream	33	29	33	34	25	45	22	17	31	20
GGCGAATGGATGCATT	alt_2069_upstream	16	17	21	20	13	7	16	14	9	13
GTTAGGGACTCGGTAG	alt_2069_upstream	179	163	220	199	147	158	162	159	172	135
TATGAATACGTTCTTG	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGGCCTGCATAGT	alt_2069_upstream	21	23	26	31	28	25	21	33	26	25
CACTAATCGGTAGGGC	alt_2069_upstream	2	2	4	1	3	5	1	5	4	7
CAGTAGTAAGCTCCAA	alt_2069_upstream	60	55	74	48	60	54	63	55	59	53
GGTCATGAGCAATCGC	alt_2069_upstream	27	18	26	28	23	20	29	17	25	21
CCCGCCCCTTAAGTTT	alt_2069_upstream	49	50	51	45	30	35	43	32	36	26
ACCCATTGCTAGTCCA	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGGGAAGATTTCA	alt_2069_upstream	50	24	50	59	47	45	43	50	44	51
CACGTAGCTATACGCG	alt_2069_upstream	2	0	0	3	3	1	2	1	6	1
CGTCTCTTAACCCGCG	alt_2069_upstream	66	66	75	67	53	70	63	55	63	68
AAAAGCGCTCCATAAA	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGGCACCCCTTAAAAT	alt_2069_upstream	10	13	8	18	8	10	20	9	8	9
CTGAATTACGGGCGTA	alt_2069_upstream	28	38	40	46	29	33	50	39	37	23
CGGTACTCATTCCTGA	alt_2069_upstream	161	129	143	136	122	127	120	123	97	118
CCTAAGATCTATCTAA	alt_2069_upstream	41	33	34	40	38	40	42	49	68	32
GCTACTCAGATGCCTT	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
ATGATCCCCGGGTGTC	alt_2069_upstream	35	58	44	55	29	36	49	42	48	39
TTTTTGCGCTTAGTGT	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
AAGCCAGTACATTTGA	alt_2069_upstream	8	5	5	6	4	9	8	8	10	5
ATAAGCTGCTAGGTCG	alt_2069_upstream	56	45	66	52	48	56	53	53	47	51
GACTCAAGGCGCTAGC	alt_2069_upstream	20	21	46	25	17	25	24	29	32	25
CGTCAAATCGGGGTGG	alt_2069_upstream	8	9	5	4	7	6	17	2	17	10
AAGTCTTGTGTACACA	alt_2069_upstream	31	32	37	36	39	22	39	31	36	27
GTTTCCCGATAATACG	alt_2069_upstream	34	29	58	35	26	40	34	30	32	36
CCATAATGTTCCTGCC	alt_2069_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGTGCGCATGAGA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGTAGATATCTTG	alt_2069_upstream	18	20	19	23	16	13	29	24	17	16
CTGATTCTCGTTCCTC	alt_2069_upstream	17	11	13	16	10	14	12	10	15	12
CTTTCAAATCCCCAAG	alt_2069_upstream	75	56	78	59	59	55	61	57	65	52
GACCACAGCAGCGAGG	alt_2069_upstream	14	12	16	12	5	15	5	15	8	8
ACAGTAGCACAAACCG	alt_2069_upstream	15	7	15	18	16	15	14	8	25	7
ATTCAACCGTCACCCA	alt_5670_new	4	3	5	4	2	4	9	4	9	5
TTACTTGCAGAATTAA	alt_5670_new	20	13	36	14	20	30	24	21	18	30
GGTTCACGATTTTGTC	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TGAATGACTGACCAGA	alt_5670_new	59	49	73	71	66	63	62	63	56	53
GTCAAGCAATCGAAAC	alt_5670_new	0	0	0	0	0	0	0	0	0	0
AGTTTTTTTCTCCAAC	alt_5670_new	23	14	22	17	25	17	10	25	18	17
TTTATGCTCTGGTCTT	alt_5670_new	47	45	64	53	55	55	33	53	53	32
AGGTTTTTTTTTGGGG	alt_5670_new	1	0	0	0	0	0	0	0	0	0
TAATCTATGGGAGTAG	alt_5670_new	29	31	34	18	20	29	23	17	23	31
TTTGGAATTTACGGTA	alt_5670_new	19	13	19	22	15	17	25	14	21	14
GTCCAATGCAGGGCTT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TTTTTGCAGGGCTTTA	alt_5670_new	62	63	86	65	67	87	66	78	56	71
TGGTTTCTTTACTCGG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CATCGTCGCGCATTTC	alt_5670_new	1	8	9	6	5	5	12	13	10	4
GGTAAATCGACACGGC	alt_5670_new	54	67	80	75	73	73	64	75	62	77
TTACTTTCTTGATGGG	alt_5670_new	23	16	16	26	26	17	24	31	26	20
TGCATGTATGGGGCTG	alt_5670_new	23	8	29	13	21	21	15	12	18	16
CTTCCATCCATCGTGG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
GTCCTCCCTTTCTTGA	alt_5670_new	18	20	23	18	21	11	13	14	26	18
CATCTATGTTCTGGTA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
ATCATCTATTGGCACG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
AGAAGTATCCGAGCTC	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CCCTCGGTTTCGAACG	alt_5670_new	15	29	29	30	30	22	34	30	26	28
AGGTTTTTTTTGGGGG	alt_5670_new	64	68	84	67	61	83	79	77	80	54
CGTGGAAGGCTTCTAT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TGGACTTTCTGAATAC	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CAAATGGTCCAAATTG	alt_5670_new	66	61	84	83	97	64	68	68	57	53
GTGCGCTAACGATGTG	alt_5670_new	105	92	114	94	108	87	90	86	92	92
CCTAAGCATAAGGTTA	alt_5670_new	65	67	77	75	64	65	51	53	51	67
TACGTTGAGTATGCCG	alt_5670_new	75	47	66	76	69	86	88	52	79	70
GGGTGGGCGCTCCGCA	alt_5670_new	45	39	64	61	37	42	60	45	41	44
GATTCTTAAACGCGGA	alt_5670_new	13	9	22	15	12	15	13	19	16	18
CTCCGTCCGGGATAGT	alt_5670_new	9	18	17	12	10	13	20	9	17	14
AGGAGATCCTGTCGGT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CATGGTGTTCATTCTG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CTTTGGCTCGGGCGGT	alt_5670_new	31	28	47	30	32	36	36	30	27	31
GCGGTTGGGGCAAATT	alt_5670_new	15	16	19	12	17	12	23	15	13	13
CATGATCCAGTCAGCG	alt_5670_new	36	23	50	52	44	70	35	37	40	37
CGTATCTATCTGTATC	alt_5670_new	44	27	35	38	39	35	30	38	43	35
CATTCGATACGTCACA	alt_5670_new	5	5	3	6	4	9	6	5	2	2
GGTGGTGCATGAGACG	alt_5670_new	100	95	148	113	98	107	100	99	133	98
TCTCCTGGTTCTATGT	alt_5670_new	48	34	58	60	56	46	32	42	57	51
TTGAGATCGACAGCAG	alt_5670_new	40	32	57	38	37	45	38	36	36	32
GTTATCTTGGCGAAAC	alt_5670_new	53	69	72	71	66	72	90	72	84	60
AAGGTTAACTATTAAT	alt_5670_new	83	63	96	71	45	60	54	71	63	50
CTGTATCAGGGCTGTG	alt_5670_new	60	38	57	59	44	38	59	43	50	42
TTTTAAAAGTGTTTTT	alt_5670_new	29	33	29	28	13	16	33	15	26	19
GGCTCAGGAGTGGATC	alt_5670_new	0	0	0	0	0	0	0	0	0	0
ACGGGCCCCACGACTC	alt_5670_new	5	0	1	4	1	0	1	0	1	0
TCGACGACAGGGCAGC	alt_5670_new	0	0	0	1	0	0	0	0	0	0
AACACACGGTTCAGTT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CACAAACTTCCTGTAT	alt_5670_new	73	59	83	81	63	51	61	61	71	46
CGCTAGGTAGCTTTTT	alt_5670_new	27	35	57	42	40	40	41	41	34	32
TAGTAACTTATCAACG	alt_5670_new	20	15	9	13	9	12	13	6	10	11
TGCAATACGCTCCGGC	alt_5670_new	82	70	81	67	67	63	62	72	48	75
CCGGGGGCTATCGGTA	alt_5670_new	7	8	9	2	9	5	6	3	3	5
GTTTAGGCGTGGTAAT	alt_5670_new	26	19	37	31	27	29	20	25	23	27
GTCCTCTCGGCATTCT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
GTAGTTAGGCTCCGAG	alt_5670_new	7	9	11	12	12	13	13	15	10	16
GGTACTTTATGTCCGG	alt_5670_new	55	68	80	45	72	62	67	79	66	53
TGCTGTCCTTAGTACA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
AGCGTCTCAAAAATAC	alt_5670_new	0	0	0	0	0	0	0	0	0	0
GAGGGTGCGTTCTCTA	alt_5670_new	16	15	20	23	14	9	10	16	22	11
AGGATAGCCATCAGCT	alt_5670_new	13	4	4	10	6	3	9	12	9	5
CGATTTAATTAATCGT	alt_5670_new	11	6	11	8	5	11	5	8	5	5
TCGGGGATTTATTGGG	alt_5670_new	6	12	14	13	5	8	8	8	12	6
AATGAAGGTTAGGTTG	alt_5670_new	29	22	27	32	33	34	36	29	34	36
TCAGTAGGAGGTCACT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
GATTTTGGAATATACT	alt_5670_new	127	94	129	143	119	121	112	100	120	106
GTATACTCTGTTGTGG	alt_5670_new	50	61	50	61	42	45	63	45	67	45
GTCAGGTTTGTTTATT	alt_5670_new	38	23	35	35	22	39	27	27	18	30
AATGGAGCTTAGCAAA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TGGCAATCTCTAAAGG	alt_5670_new	3	3	4	1	4	2	1	3	2	3
GGACCGTGCGACTTCG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
GCACGGCCTTCTGGGG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TCTTGCTTGCAATGTC	alt_5670_new	3	0	0	1	3	2	1	5	5	1
AATGTAGCGATTCACG	alt_5670_new	8	12	11	13	10	3	10	11	9	8
TTCAAGAAAGTAAAAA	alt_5670_new	18	14	15	14	24	14	13	16	20	16
TGTACTCGCGTTGCCA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TCAAATGTTCCATTGG	alt_5670_new	14	8	15	6	12	7	15	12	10	18
TAACTCCGTCCAGCGG	alt_5670_new	17	18	18	14	13	11	19	17	18	16
CGCCACACATTCGAGT	alt_5670_new	20	35	44	43	36	49	36	41	36	31
ACGAAAGATGTACAAC	alt_5670_new	2	3	6	8	1	7	4	4	2	3
GCACGGGGGGAAGTGT	alt_5670_new	6	10	9	4	13	5	3	6	7	10
TTATTGAGTCAGGACG	alt_5670_new	3	5	7	6	5	2	2	2	10	3
GATCTAGCTCTACAGG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
ATCCAATCTCTTTGTA	alt_5670_new	6	4	4	0	2	6	6	4	2	1
ACTTGTGTGTCATGCT	alt_5670_new	1	0	2	3	0	3	1	1	2	1
GTAACTTTCTCGGTCC	alt_5670_new	7	16	10	15	11	21	5	6	11	9
CATCGCCTCTTGGCGG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CGAACAGCACTTGAAT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TCCGTTCGGCGTTACA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TAGTAATCAACTACAA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CTCGCATAACGCGCGC	alt_5670_new	49	39	54	39	37	34	38	52	37	38
TGTTAAACTCCTCGTT	alt_5670_new	55	67	44	43	46	44	56	35	47	49
AGTTATGGAGACGGTA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
GACTTGGATTGTGATT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
ACCACTCAGTGTAAAA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
AACGTAATTCGTGTGC	alt_5670_new	9	12	11	7	11	18	7	12	11	13
CCCCCTACTAGCCGTT	alt_5670_new	13	22	8	5	21	8	26	15	10	11
ATACCTAGCTCTCTTC	alt_5670_new	25	19	32	26	15	29	28	24	35	19
CCTATGGACATGAGCA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CATATGAAACCGGTCT	alt_5670_new	7	7	19	20	12	6	8	15	6	8
GACGATGGCACGAAAC	alt_5670_new	6	1	3	6	1	2	4	0	1	3
GGGTAGATTCTTAAGG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TGTTGATGGGAGTACT	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TGTTTGTACGGATAGT	alt_5670_new	65	77	88	85	75	56	77	65	75	65
TAAATGTATAGCTTGG	alt_5670_new	46	30	55	37	32	39	43	42	39	49
TATTTTGCGCGTGTTA	alt_5670_new	225	124	242	249	138	198	143	185	166	174
TTTTTGTGTCATCATC	alt_5670_new	7	5	1	0	2	5	3	2	7	2
CAGCTGCCAGTAACGG	alt_5670_new	3	3	17	5	9	7	4	9	4	8
ATTACTTGGTAGGTTG	alt_5670_new	37	47	49	38	39	34	50	34	39	32
AGCAATGGCAAGCATT	alt_5670_new	7	10	5	9	2	6	4	3	2	6
GGTATTCAACAGCAGA	alt_5670_new	22	32	54	31	32	28	48	37	29	31
GCTTCCTAGGTTTTCA	alt_5670_new	0	0	0	0	0	0	0	0	0	0
ATAAGATACGACATGG	alt_5670_new	1	0	2	5	2	2	5	2	3	0
GTAAGTCTTGTGCTGC	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TATCTAGAAAATGTGG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
CGCACCTATGTGGTTG	alt_5670_new	0	0	0	0	0	0	0	0	0	0
TTTTTTAAGGCAACTC	ref_5725_new	2	6	5	3	5	4	4	1	4	4
TGATATTTAGTTGCTG	ref_5725_new	37	32	34	30	34	28	35	27	47	15
TAATGCCCTTCGGGGT	ref_5725_new	1	6	5	7	1	1	2	0	2	3
GTCCGGCCCGCGCCGA	ref_5725_new	94	132	131	102	103	86	137	84	118	91
GTAGAGCGAGACTGAC	ref_5725_new	19	49	23	24	38	19	42	27	43	17
TGCTGGGTCATGCCTT	ref_5725_new	0	0	0	0	0	0	0	0	0	0
ACTTTGTCTCGAAGAC	ref_5725_new	0	8	3	3	4	1	11	2	14	1
GGCCGGACGTGGCATG	ref_5725_new	35	69	36	45	61	34	67	33	91	50
GGCCTACGTACCGTTA	ref_5725_new	5	11	11	4	18	2	14	3	11	6
CATGTTCTCCCGCAGC	ref_5725_new	18	22	21	12	32	15	29	11	38	14
TTGTGGTATGGATAGA	alt_5725_new	0	0	0	0	0	0	0	0	0	0
ACATACGGACAAGGAA	ref_5725_new	10	10	11	8	18	7	12	7	11	11
ATTGGGTATCTCACCT	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TGGTTCAGGGTTTCGA	ref_5725_new	37	63	44	39	47	43	88	45	80	34
ATTTTATTCGTTATTG	ref_5725_new	106	174	148	138	143	137	182	128	201	143
GAATAATAGTGCCCCG	ref_5725_new	66	54	89	51	64	48	65	47	62	45
ATATTATTCGTTATTG	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TAAAACTTTCAGGCTA	alt_5725_new	26	33	31	35	34	25	35	24	37	15
TGCCCAGTATTACGAA	ref_5725_new	0	0	0	0	0	0	0	0	0	0
GGGTTTGCCCTCGGTT	ref_5725_new	33	93	53	38	66	30	68	32	78	31
ATTGATCTATTCTCTG	ref_5725_new	15	41	18	24	42	18	53	15	43	18
TCATCCGTACTACATG	ref_5725_new	25	82	45	43	65	48	65	49	67	38
CGGGTTCGGCAATACG	ref_5725_new	18	36	32	20	39	26	30	15	33	24
CTCTGGTCATATACGC	ref_5725_new	14	17	5	9	30	15	16	6	19	8
CGTGCCAGACGTCTCA	ref_5725_new	23	41	18	17	34	15	29	21	39	16
GCTCCGGTCTTGATAC	alt_5725_new	12	22	12	9	14	8	18	7	24	5
GTTAACCAAAACCGCA	ref_5725_new	9	15	9	5	9	1	10	5	9	1
TTCTCGCTTGCACTCG	ref_5725_new	0	0	0	0	0	0	0	0	0	0
ACAAGACGTCGTTACG	ref_5725_new	65	101	79	62	89	48	106	59	108	53
GCTTGAACACTTCACT	ref_5725_new	0	0	0	0	0	0	0	0	0	0
GCTGTATGCACTAGAT	ref_5725_new	5	6	4	7	8	4	9	3	7	1
ATATCTGGGGTCTTGT	ref_5725_new	55	57	70	50	75	53	77	40	85	51
GCTTTCACCTGGGTTT	ref_5725_new	1	4	7	2	6	3	3	7	4	4
CGCTCCATAGATCGGT	ref_5725_new	43	73	46	40	66	38	73	32	66	32
TCTTATCGACGAGGGA	ref_5725_new	2	2	3	0	9	3	1	3	3	0
TATGTCCGACTCTTAT	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TGTTTTGTGCAAGCTC	ref_5725_new	19	30	34	24	39	14	31	17	49	9
AAGATTCCTAGTAGGG	ref_5725_new	22	29	18	13	25	18	35	16	45	16
CTTAGTGATTATGGAT	ref_5725_new	11	21	9	7	21	11	21	11	28	12
TTACCTCATTGGGTCA	ref_5725_new	0	0	0	0	0	0	0	0	0	0
CCATCGTCTTGGCAAC	ref_5725_new	10	11	6	2	11	6	14	6	23	8
ACTTAACTGTTCTAAC	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TCACTACTTTTCTGCG	ref_5725_new	5	8	9	7	8	6	16	6	17	9
CTACACTGTGTAATTT	ref_5725_new	3	5	1	3	9	4	15	4	7	5
CTGTCCGTTCCGTTGC	ref_5725_new	9	5	1	6	13	10	25	3	19	15
ACGTTGGTTAACCGTC	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TCCGGGACTGGCCACA	ref_5725_new	4	12	4	1	11	3	13	0	16	4
CGCTTGCGGCTTCGAT	ref_5725_new	5	10	7	5	12	12	7	7	15	5
GCTGCCCGAGCTCTTC	ref_5725_new	26	49	36	50	62	44	48	37	48	19
GATAATGGATCGTCGA	ref_5725_new	19	37	20	29	40	36	37	20	36	24
GAATCTGCCAGTTATC	ref_5725_new	21	39	37	32	27	24	47	21	46	18
TTAATATATCGCTGAT	ref_5725_new	7	17	15	9	7	6	16	7	12	9
GTGTTGCATCCTAGTC	ref_5725_new	50	70	54	58	84	58	76	38	76	31
ACGTACCGGGCTTAAA	ref_5725_new	40	100	57	39	79	41	99	43	125	33
CACTGGGCAATTGTAC	ref_5725_new	6	28	7	4	18	8	13	2	13	7
GATTTGTTCTTGTTAC	ref_5725_new	0	0	0	0	0	0	0	0	0	0
AAGCATAATAGTTGTC	ref_5725_new	28	54	49	43	60	25	58	22	47	35
CCTCACTATTTTATAC	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TGGCGGCGTCTAATCA	ref_5725_new	37	52	43	39	47	35	63	31	71	38
AATCGACCAGAACGGG	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TATACACGGCCCTATT	ref_5725_new	139	207	197	167	209	123	251	94	242	135
AATCGTATATTAACCT	alt_5725_new	264	390	328	266	419	289	440	239	401	291
GATCTCGATTTATTCG	ref_5725_new	32	46	31	28	39	30	38	26	46	23
GCAGGACACTCATCCC	ref_5725_new	0	0	0	0	0	0	0	0	0	0
ATCCAAGGAAGGGATA	ref_5725_new	11	23	17	15	23	12	25	20	21	13
CGCTTGAGATTATTCT	ref_5725_new	18	21	19	20	20	19	28	13	20	18
CGTCTATTTCAATCTT	ref_5725_new	4	7	10	7	8	11	4	4	12	8
CGGGGTGGTAGCCGGT	alt_5725_new	32	43	25	22	44	28	35	21	30	39
ACTGATAAGGGCTCTT	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TTTTATAGTTCTACCG	ref_5725_new	0	0	0	0	0	0	0	0	0	0
GATACGTCCGCCACTC	alt_5725_new	23	32	34	25	52	27	53	25	46	24
GAAAAACGTGCACTCC	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TGCCTTAACGCCACTC	ref_5725_new	11	9	14	8	23	16	16	7	13	13
CCATTCGCTAGAATAT	ref_5725_new	35	42	38	30	40	28	63	27	61	37
TAATACAGGTACGCTA	ref_5725_new	40	64	44	39	60	42	56	33	71	26
GAGCGTATAAAAGCGT	ref_5725_new	22	54	32	25	50	30	49	17	43	13
CCAACTTAGGTCATAA	ref_5725_new	47	47	42	38	60	28	59	27	60	35
CCGGCGAAAGTTGGTT	ref_5725_new	84	125	94	88	139	86	132	94	132	65
GCGCTCTGGCTATGGG	ref_5725_new	0	0	0	0	0	0	0	0	0	0
GGTATTTGGCATTTTT	ref_5725_new	0	0	0	0	0	0	0	0	0	0
ATTCTTCATAGGACCT	ref_5725_new	68	91	80	53	106	58	89	56	91	43
ATCGTCCGTGACTGGT	ref_5725_new	21	32	29	16	37	20	35	24	41	14
TAGTCAGGCTGGAATA	ref_5725_new	23	43	27	41	49	27	44	25	37	14
CCATCGGCACGCATGC	ref_5725_new	48	84	63	51	74	46	76	50	86	38
TGCTCTGGTGTTTCGA	ref_5725_new	62	75	72	72	78	40	89	55	65	53
ATTTTTGGGGCCATTC	ref_5725_new	0	0	0	0	0	0	0	0	0	0
GGGCGAGCCGGGTACA	ref_5725_new	0	0	0	0	0	0	0	0	0	0
TCTGGCATCCCACTCC	alt_5725_new	53	67	39	42	66	43	90	45	73	38
TGTGTCCTTCGGATTC	ref_5725_new	13	19	15	18	12	13	16	16	22	22
AAGACTGTACGTTAAC	ref_5725_new	36	60	53	36	54	49	74	43	50	33
CTCACTTTAACTATGG	ref_5725_new	12	15	11	9	20	4	29	10	25	9
GTTCGTGCCGCCTATC	ref_5725_new	3	10	12	5	4	5	7	5	11	4
CCGCAGCCATGTTAAT	alt_5725_new	1	21	0	2	18	5	25	1	19	4
AATTCCGCGAACAGCT	ref_5725_new	18	30	28	25	30	22	26	22	33	25
TTTCATTAGTCGTAGT	ref_5725_new	5	8	5	4	5	6	7	1	14	3
CTATGGACCGTTGGTG	ref_5725_new	19	36	19	16	46	24	48	15	37	30
CTGGGCCAAGGACCAC	ref_5725_new	25	53	23	29	55	29	59	29	61	25
CGAGGCTTCTCATATG	ref_5824_new	45	35	46	33	49	36	43	38	48	19
TGCAGACGCACTCTTT	ref_5824_new	29	66	37	42	39	48	81	42	44	26
CCGGCACCTAGCACGG	ref_5824_new	21	43	20	24	38	28	43	19	38	24
TATTACAAATATAATT	ref_5824_new	7	8	3	3	10	12	15	3	10	4
ATCTCGTGGCGGCTTT	ref_5824_new	0	0	0	0	0	0	0	0	0	0
AAGAGGACTATCATGT	ref_5824_new	121	140	176	129	138	143	147	125	137	127
AGATAGTAGGTTAGTT	ref_5824_new	35	58	44	28	42	48	46	23	51	33
CCATTGGATTGTTTAT	ref_5824_new	11	14	5	5	17	12	12	10	14	7
CAGGATTTACTATTTG	ref_5824_new	42	77	64	62	93	51	82	55	86	57
TATTCGCCGTTTCCGC	ref_5824_new	26	51	45	37	52	34	53	31	53	36
AACTAACTCACCGACC	ref_5824_new	0	0	0	0	0	0	0	0	0	0
GACATCCGACCTGACA	ref_5824_new	0	0	0	0	0	0	0	0	0	0
CCCGAGCATCATTGTA	ref_5824_new	24	50	35	19	50	46	41	10	46	23
GTAGGACGGCTTAAAT	ref_5824_new	0	0	0	0	0	0	0	0	0	0
AGCGGCCCTGCCATCT	ref_5824_new	5	9	2	2	5	8	9	3	5	4
ATGAGTCAAATGAATG	ref_5824_new	0	0	0	0	0	0	0	0	0	0
TAAATCGGATTAGACG	ref_5824_new	0	0	0	0	0	0	0	0	0	0
GTCATCCCCAAATTCA	ref_5824_new	38	74	53	61	84	45	69	38	81	44
CTTAAGTTCGCTCGCT	ref_5824_new	11	31	10	11	27	18	27	17	37	17
ATAACTCGCTTGTAGC	ref_5824_new	1	5	3	5	10	5	7	2	8	1
TACGTTTCGGCTATAC	ref_5824_new	13	23	24	11	21	17	27	22	35	18
TCCAGCTTACACAGTA	ref_5824_new	9	22	14	16	39	11	38	16	26	18
GCCTTCAGACTCTTGT	ref_5824_new	8	22	19	19	17	10	24	12	19	8
AGCTGTTAGCACCGTA	ref_5824_new	0	0	0	0	0	0	0	0	0	0
CGAGCTGAAGCAGTAT	ref_5824_new	0	0	0	0	0	0	0	0	0	0
CTTTAGCAGATCGGCC	ref_5824_new	29	33	19	21	33	13	34	9	48	19
CGCTTGGTCCTCCCGG	ref_5824_new	132	170	165	128	165	136	173	124	210	137
TCTGGCGGTGTAAAGA	ref_5824_new	86	135	93	113	113	80	119	66	135	80
CGTATAACCTAGATAA	ref_5824_new	14	30	24	18	43	17	35	16	49	21
TTATGGCCCTGCAGCT	ref_5824_new	13	16	11	12	19	11	16	7	10	9
GAATCATTAACAGTTA	ref_5824_new	54	75	67	48	73	59	88	36	91	52
CTACGATTGAGTACGC	ref_5824_new	10	31	17	11	25	12	26	12	26	12
CCGATCCTTGCAAATA	ref_5824_new	26	61	41	22	48	19	44	31	64	22
TTCACCTTGACCATTC	ref_5824_new	17	50	20	19	32	20	36	17	44	22
GGGGCGGTAAGTTATC	ref_5824_new	11	13	11	4	12	15	12	10	13	8
AATTGGCCTATTCCCC	ref_5824_new	15	15	12	12	6	16	19	7	18	7
TTCTTCTGTAAATGTC	ref_5824_new	18	41	26	16	25	20	29	11	29	19
CAAGCCACGCTTCGAA	ref_5824_new	0	0	0	0	0	0	0	0	0	0
TAGTTAATTATAGAGC	ref_5824_new	0	0	0	0	0	0	0	0	0	0
TACATGTGGTGTGTAA	ref_5824_new	0	0	0	0	0	0	0	0	0	0
ATTGGATCCGATCCTT	ref_5824_new	0	0	0	0	0	0	0	0	0	0
TCGGGTCGTATCAGGT	ref_5824_new	103	128	140	119	136	93	168	106	143	75
GTGTTCGTAGCGCCTC	ref_5824_new	11	5	7	2	5	7	6	5	7	8
CACCTTTCATATGGGT	ref_5824_new	23	46	28	26	53	18	41	10	53	28
GTCTGTTAGAAGAGGA	ref_5824_new	30	61	41	36	49	42	62	30	64	25
TGGGAATCATAGACTG	ref_5824_new	15	31	30	12	29	13	26	9	39	16
CGAGTGAGCATCACTG	ref_5824_new	15	12	10	10	22	9	19	10	17	4
TGCTTTTAGTCTTAAC	ref_5824_new	11	19	8	3	27	9	26	8	29	7
TAGAAGGTGTATTGCG	ref_5824_new	0	3	6	4	4	2	2	2	4	1
AGGGATTGTTTATAGG	ref_5824_new	74	96	82	69	68	53	72	68	72	55
TGGGCTAAATTATTAG	ref_5824_new	43	79	57	40	72	51	70	39	78	34
TTCAACATACTCCATC	ref_5824_new	0	0	0	0	0	0	0	0	0	0
GCCTATGTCAATGCGC	ref_5824_new	17	29	14	12	27	11	35	8	38	7
AGGGACTTTAATCTCG	ref_5824_new	0	0	0	0	0	0	0	0	0	0
ACCCCTCCGTGATTAT	ref_5824_new	6	10	11	5	16	15	14	5	5	11
GCATCCTGCAGCCAGA	ref_5824_new	49	73	64	51	87	68	79	54	101	42
ACCGCTTTTTAGAACT	ref_5824_new	5	16	6	12	17	7	13	8	10	11
CATAGCTTTATTAGTC	ref_5824_new	37	58	52	36	76	28	43	19	63	36
CATGGAGGCTGCTTTA	ref_5824_new	15	22	18	15	19	10	20	12	24	10
GGCCAGGGTAGTAGGC	ref_5824_new	17	22	26	17	20	23	31	18	25	19
ATGGCTGTGCCAATCC	ref_5824_new	181	267	235	215	252	172	267	178	310	164
GTCAAATTTGACGTAG	ref_5824_new	39	70	57	57	91	43	74	47	74	31
GGTTGCCCGAACGCCA	ref_5824_new	0	0	0	0	0	0	0	0	0	0
GTCGTCCAGGTTGAAT	ref_5824_new	14	12	11	16	19	15	19	10	16	7
GGTCCCACATTCTGGG	ref_5824_new	35	40	54	36	64	34	59	38	77	30
CTCGTTGGGGGTTAGC	ref_5824_new	162	249	210	156	227	145	226	153	220	141
GAGGTATGGCAACTCT	ref_5824_new	3	2	1	7	5	4	3	4	3	4
GCCTTGTTCTAGGAGA	ref_5824_new	0	0	0	0	0	0	0	0	0	0
TAAAAGCTATTTAGCT	ref_5824_new	65	71	73	57	82	54	99	47	106	44
GGGTTGGTTTTATTTT	ref_5824_new	6	17	12	8	18	12	15	13	20	2
TTTTCGAGTAGGCCTT	ref_5824_new	0	0	0	0	0	0	0	0	0	0
AAAAGAATCTGCTACC	ref_5824_new	30	40	29	35	44	27	30	23	32	24
CACCCGGAGATGTTAT	ref_5824_new	37	54	33	35	42	27	55	28	35	36
TAGTAATCGTCCCTTT	ref_5824_new	44	67	54	35	51	50	70	35	70	27
CATCTGGTTTCGGGCA	ref_5824_new	58	68	56	52	68	37	62	48	71	47
CCCATGCGCCGATTCA	ref_244_reverse	55	25	67	53	33	57	24	37	23	46
CGGGGTCCATAACTAA	ref_244_reverse	453	183	518	485	157	420	202	423	213	410
TATGGTGTATATAAGC	ref_244_reverse	112	43	136	141	50	128	61	115	60	106
CGTGTCTGGGCGTCGA	ref_244_reverse	86	55	121	107	42	93	48	93	44	99
AGTATCTTAATTAGAG	ref_244_reverse	7	7	9	12	5	10	6	14	3	7
ACCCGTCAGTCCCTGG	ref_244_reverse	30	13	38	47	6	28	19	17	13	37
GAGGTTGTGCACGCCC	ref_244_reverse	89	52	119	85	41	94	65	82	48	87
GTAGTTTGGGTCCCGT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TGATCCCGGGCCTTCC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGTTTCAATGTCA	ref_244_reverse	19	7	16	32	16	22	4	25	11	17
CAGCCCGGATTCTCTA	ref_244_reverse	97	83	143	161	105	113	89	113	106	99
AATAGATGTCTTTGTT	ref_244_reverse	73	27	76	69	17	65	36	62	25	58
AAACCTAGTGGTTTTA	ref_244_reverse	132	66	159	131	62	144	48	111	74	120
TGTCATGTATTATACA	ref_244_reverse	92	41	86	93	51	75	47	65	44	82
ATTATGTATTTTGTGT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGGGTTCAGGACT	ref_244_reverse	27	12	37	25	8	28	16	15	10	16
TCTCTCCTAATCTTGT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGCAAGATGTTTC	ref_244_reverse	130	49	168	137	50	118	64	144	74	107
GTGACCCATTTTTGAT	ref_244_reverse	130	52	174	135	56	113	70	110	49	98
ATAGCCGGACCTAAGT	ref_244_reverse	167	101	255	217	88	202	114	169	118	175
TTACCTAGCGTCAATT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
GCGATTTTCGGTTGGC	ref_244_reverse	105	46	105	91	30	104	42	102	38	74
TTTCCAGTCTCTCGCC	ref_244_reverse	11	5	11	7	8	10	3	4	2	2
CATCCCGGTACAGGCC	ref_244_reverse	44	16	43	52	20	40	27	43	19	25
GTATCTTTTACGCCTT	ref_244_reverse	149	67	158	168	44	151	60	138	65	140
AAATTGTTGCCTCATA	ref_244_reverse	24	17	51	38	17	37	8	37	18	36
TCGCTGATCCGCCCAC	ref_244_reverse	103	41	132	95	55	113	64	97	60	117
CGGCCGGTCTGCGTAG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
GGTTACCATATCGCGT	ref_244_reverse	40	19	38	43	28	36	25	36	18	37
AATAAGGAATATGTTT	ref_244_reverse	57	24	45	51	26	47	19	29	23	53
GCTTTATTGTACCTGG	ref_244_reverse	197	87	232	198	77	200	86	216	106	173
TTGGTGTATATTGTGC	ref_244_reverse	84	27	88	81	27	76	28	65	25	58
ACCGTACAATCTAAGT	ref_244_reverse	88	40	80	77	36	74	45	85	36	75
AACCTGCGAGCTGCCA	ref_244_reverse	147	65	148	102	41	102	61	120	64	109
GCAATTATGAGGCTCA	ref_244_reverse	6	4	9	5	2	3	2	4	0	4
TATCGGCCCAGGTGGG	ref_244_reverse	8	2	10	10	5	3	6	16	2	7
CTTGTCTAATATGCGT	ref_244_reverse	103	55	128	101	44	79	51	78	44	82
TGAAACTCATAGCGAC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TCCGACGTTTACTGTT	ref_244_reverse	140	73	170	184	65	137	74	106	83	124
CGGGTCCTTTATCGAG	ref_244_reverse	29	25	36	36	21	46	14	29	15	37
ACACGTGCTCGATAAT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGCCGCGCCTGGG	ref_244_reverse	228	73	265	208	102	183	114	204	90	194
ACCCATATTATATAGA	ref_244_reverse	95	35	125	74	26	89	35	100	37	105
ACCTTCATACGCATGA	ref_244_reverse	90	59	132	142	68	95	55	95	45	96
CAAGTCATCTTCTTTA	ref_244_reverse	24	35	44	24	28	29	41	27	50	25
AGATGGTTCGGTTCGG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGGTTTGACCTAG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGCGGATTGCTAA	ref_244_reverse	32	20	16	17	10	20	21	33	21	24
ACTATAATTGAGTTAG	ref_244_reverse	170	82	176	171	77	143	74	130	81	151
ATGAGAATTTCGACTG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
GAATCAGTTAGGCTTT	ref_244_reverse	30	9	35	25	15	27	14	20	18	17
ATGTACTCCGGGGTTT	ref_244_reverse	36	11	59	32	18	43	20	33	17	26
TGGTCAGTCCCCGGTT	ref_244_reverse	9	5	19	11	6	9	7	12	2	11
GGTAATTTACGACTTG	ref_244_reverse	29	13	42	37	16	28	12	16	12	35
AAGCTCGAGCTGCCTT	ref_244_reverse	9	3	9	14	1	1	3	6	3	7
TGTGCGCTTTTATCGA	ref_244_reverse	230	110	282	238	118	242	97	200	98	203
CACTTGTTGGAATCAA	ref_244_reverse	119	39	127	87	40	109	43	85	40	81
TGAAATCATCTCGCAT	ref_244_reverse	171	61	220	174	91	145	59	133	81	166
ATTATACTCCAGCGTG	ref_244_reverse	16	5	17	16	8	15	11	18	3	9
ATGTCGTTACGAGTTC	ref_244_reverse	66	30	89	67	27	54	34	77	35	59
GGGGACTGGGGTCCTG	ref_244_reverse	446	185	544	453	201	433	190	393	184	433
TCAGACTTTTTCGACC	ref_244_reverse	52	16	46	45	28	32	32	48	22	39
TGTCATGTCCTGGCAG	ref_244_reverse	56	18	78	48	17	50	27	47	24	50
AGTAAAGTATTAGCTA	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TTACGACTCACGTAGT	ref_244_reverse	102	50	126	121	53	130	45	98	59	105
CCTTCACTGTGTTGCC	ref_244_reverse	96	78	115	98	102	68	109	76	114	98
CCCGGCTATGGGCGAT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
CTACTGCCATTTTTTC	ref_244_reverse	7	7	2	7	3	16	4	9	3	4
AATTTGTGCCTCTTCA	ref_244_reverse	57	27	73	67	29	54	19	68	31	65
TAGCGGTGTTCAACAT	ref_244_reverse	150	65	187	168	88	147	72	144	61	145
TTCTGTATATTTCCGT	ref_244_reverse	89	41	92	53	36	70	30	100	38	77
CCTCATCCGTGGCTAC	ref_244_reverse	48	29	35	51	19	33	21	37	22	37
GGTCCGATGTCTTTGG	ref_244_reverse	41	37	49	50	55	49	37	28	53	38
CTTGAGAATATACGGT	ref_244_reverse	291	99	318	276	116	273	114	275	105	254
TCCTTAAAAGCTAAAA	ref_244_reverse	25	13	25	23	6	23	12	14	6	19
TTTCAGCGTCTCGTGA	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGTGGGCCCGTAC	ref_244_reverse	148	70	156	130	73	131	71	151	65	138
TGCGTGAACCCGGTCT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGCCAGCATTGTG	ref_244_reverse	152	61	195	164	53	152	61	166	85	135
ACCCCTATATATGCGT	ref_244_reverse	132	61	141	113	69	107	67	121	58	117
TGGCGATTTACTAATA	ref_244_reverse	46	23	63	44	24	44	18	46	34	35
GAAACTTATTATTCTT	ref_244_reverse	45	21	61	51	24	38	24	57	27	43
CTCTCTACCATGGCCG	ref_244_reverse	26	15	37	20	9	29	12	24	11	33
TGGGAAATGTATGGCC	ref_244_reverse	22	10	33	31	13	20	13	28	10	31
AGATTATATACCATGT	ref_244_reverse	325	135	350	341	149	315	150	287	151	298
ACGGGAACTTCTCGCT	ref_244_reverse	86	39	99	81	25	92	41	56	43	66
CTCTAGAAAAGACTCA	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCGATTATCTTTC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTCCCGATACCGC	ref_244_reverse	31	23	56	45	32	38	21	45	18	27
CCCATTGATACAAACG	ref_244_reverse	29	12	25	37	15	29	17	21	19	23
GACCAGCTTTCCGCGA	ref_244_reverse	338	131	449	401	176	347	161	337	146	327
TCTAATCCGCGGAAGT	ref_244_reverse	12	2	14	21	12	10	5	12	3	13
TTGAGAGCTCTGTTTA	ref_244_reverse	112	76	133	124	60	114	58	140	46	97
GGAAAAGGGTATTAGT	ref_244_reverse	69	34	87	82	36	71	26	50	32	61
GACCTAGGTCTTAAAG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TGAATTAACCGGACGA	alt_244_reverse	136	62	175	141	47	125	83	152	69	123
TCCCTATTACTGCCTC	ref_244_reverse	130	45	144	146	71	103	68	114	44	97
TCATGAACCACTTTCG	ref_244_reverse	17	8	40	18	10	14	2	11	7	14
CTAAAGCCCTAGCTAC	ref_244_reverse	157	68	181	157	83	140	80	157	75	152
TCGTCTACAGTCAAAA	alt_244_reverse	76	33	98	83	35	83	28	61	30	87
AAGCCAACTTATGCTG	ref_244_reverse	68	40	78	68	36	58	31	65	35	57
GTAAGAGAGGCACTAC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTTACATCACAAG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTGCTCCATGCC	ref_244_reverse	83	39	92	94	32	70	39	73	41	75
GCTATCCTGCCTGCTT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
AGTGACCAGGACGGAT	ref_244_reverse	11	5	11	8	2	9	3	11	3	14
GAACGATAGTCTCGTT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
GAAAGAGTTTTTCGTG	ref_244_reverse	63	27	69	66	39	63	31	56	38	56
GAGCGAGACCACTGTA	ref_244_reverse	182	89	212	195	70	167	93	168	90	146
ATGATAGCAATAGAGG	ref_244_reverse	270	143	373	302	123	267	141	271	132	268
AGTTGACCCTTTATTA	ref_244_reverse	114	50	125	112	43	108	60	101	57	78
ACTACCAACCCCGGCC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
AACTCCCTAATGTAGT	ref_244_reverse	108	56	110	107	68	108	44	99	62	82
GTTATGCGTTCTTAAC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTGTGGGCCGAAT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TGTAAACGGTTACTAC	ref_244_reverse	47	31	46	47	31	31	28	29	43	31
GACCGTCTGCCTCGGT	ref_244_reverse	8	6	18	16	6	20	1	11	5	18
TTTTGGGGTGATAGTA	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGTGATGGCCGA	ref_244_reverse	20	6	18	20	8	17	2	18	10	19
GGACGGCGTAGGCTTG	ref_244_reverse	45	14	60	43	17	42	21	43	17	36
CCGAGCTGAAGACCTG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
AGGTACGGTACTCAGC	ref_244_reverse	44	20	37	55	24	25	14	35	16	24
CGATGTCGGCATCACT	ref_244_reverse	8	5	14	8	3	12	5	11	7	12
GTCAATGCTTATGCCC	ref_244_reverse	165	79	185	168	79	152	84	132	78	139
ACCATGCAGCGCGGCA	ref_244_reverse	315	154	390	347	155	326	151	313	178	328
TAGAGGCAGACACTAT	ref_244_reverse	233	94	281	249	108	239	99	227	94	217
CCATAGGTAATTCTAA	ref_244_reverse	40	15	60	41	21	46	21	48	28	42
CCATTATGTGAAACAT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
GGTACGTCTCGCAACC	ref_244_reverse	160	63	191	150	84	142	74	165	75	138
ACGCGAGCCCAGCCAG	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
CTACCGAGCTCCTATA	ref_244_reverse	52	31	67	76	36	58	36	46	31	71
GGTGGTTTCCCCCAAG	ref_244_reverse	13	6	13	18	16	19	6	20	7	6
TGTGTTTCACGGTTTT	ref_244_reverse	14	13	26	19	7	22	12	14	9	14
AGCATTTATGTATATC	ref_244_reverse	4	1	3	5	2	1	0	1	5	3
TAACGCAAAGGGAGCA	ref_244_reverse	9	4	12	11	2	9	2	13	5	13
TCAGCACTACGGTACC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCGATACGAGATT	ref_244_reverse	79	35	73	76	29	84	47	79	34	54
TCATTTACTGCCCCGT	ref_244_reverse	48	13	32	19	16	24	10	18	13	22
TCCCGGACATTCGGTA	ref_244_reverse	67	28	102	84	27	50	22	66	36	70
GTTTTGGGGTGTCCGC	ref_244_reverse	187	88	215	198	77	197	98	142	81	153
CATATTTCCACACTGC	ref_244_reverse	79	43	87	72	36	64	34	74	51	75
GCCCATGCCTGTCCAA	ref_244_reverse	20	10	40	28	10	19	8	31	15	13
CTGTCCGTATCGCGTA	ref_244_reverse	39	10	37	32	13	36	18	28	22	29
ATTTGAATATAATGTT	ref_244_reverse	501	220	652	535	229	540	251	500	252	494
CCTACCGAAAATTATT	ref_244_reverse	12	13	24	20	15	14	9	20	9	16
GGCCCCTCACTTTTCG	ref_244_reverse	294	113	363	302	105	272	131	236	118	264
CCGCACGTTTACTCAC	ref_244_reverse	54	47	64	56	25	48	46	53	46	42
AGCGCTCGTTTTGAGG	ref_244_reverse	72	39	115	113	41	130	53	95	60	87
ACCGCGTCGTTTCTAC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGTGTTTGAGTAA	ref_244_reverse	125	40	129	127	39	99	44	112	51	89
TTCGGTTCAGAGTGAA	ref_244_reverse	105	59	136	143	59	105	57	98	50	109
CATGTTTCGCATATTA	ref_244_reverse	124	63	162	152	49	120	64	120	49	122
GTCTCCAATCTTGTTC	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
AGTATACGCTCGTTAT	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
ACAACACGGCAGACCA	ref_244_reverse	0	0	0	0	0	0	0	0	0	0
ACAATTTTGGCAGTAA	ref_244_reverse	114	62	154	121	55	124	48	116	77	128
ATCGTATCCTGGTTTG	ref_244_reverse	14	2	9	8	2	13	2	9	2	4
GCTTTTTCGTTTGGGT	alt_1787_RC	15	21	14	15	25	18	15	14	20	12
CAGCCTACTTGGTTCA	alt_1787_RC	2	11	3	1	8	1	8	3	11	1
TGAACGCCTTCGGGCG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GCATTCGTTAGCCCGA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
AGTGAGCAGAGAGGTT	alt_1787_RC	8	16	10	6	13	11	19	6	13	7
GGTATACGATAGTGCG	alt_1787_RC	6	12	8	8	10	4	6	5	9	1
GGCCTCCGTCGTAGTT	alt_1787_RC	88	127	109	94	124	92	127	89	137	94
CACTGTAATAGTACCA	alt_1787_RC	33	56	25	32	70	32	54	32	76	24
GCAACGACTAAAGTTT	alt_1787_RC	76	114	92	82	112	71	103	45	117	87
GCAATGTCATGTTCAA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
AATCTACGAGAACGAG	alt_1787_RC	7	14	6	10	15	5	12	9	10	9
ATTTTACCTAACGCCT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CCGGCGGTGGGTATTT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CATCGGATATGTTTCA	alt_1787_RC	24	36	35	23	34	21	49	30	55	24
TTTGGTTAATTCATAC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TAGTTACAAGGTCACG	alt_1787_RC	10	15	7	10	15	12	7	7	20	11
GTCGTAACTACGTGTT	alt_1787_RC	10	24	27	25	31	20	30	14	32	25
ATCACACTACATTGCC	alt_1787_RC	16	37	19	22	29	16	33	14	22	26
CCCATCCACGTTCCTC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CTATTATCACGGCACC	alt_1787_RC	9	8	4	9	8	4	9	5	10	10
CCGTGCTTTGTATTGC	alt_1787_RC	2	2	7	4	3	6	5	2	9	5
TAGCGTCGGCGAAATC	alt_1787_RC	8	19	14	13	16	15	12	15	30	9
GTCTTCGACGTCGGCA	alt_1787_RC	6	9	8	9	13	10	14	6	22	6
CAAGTGTAACCAAGAC	alt_1787_RC	3	9	7	6	7	5	7	2	11	3
AGTAAGACGTTGATCC	alt_1787_RC	20	29	26	20	25	23	29	17	29	14
TATAGTGTTTTTAACT	alt_1787_RC	50	64	53	38	63	30	73	38	69	39
TCCACCTAGATTTTTG	alt_1787_RC	18	21	15	10	18	8	15	6	6	8
AAATCAGTACGCGGCA	alt_1787_RC	24	22	25	13	33	15	22	21	37	14
CTATCTGTCTTGTGCA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ATAAACTTTCCATTTC	alt_1787_RC	6	11	8	8	15	4	13	9	10	6
GCATATTTTGGCTGCG	alt_1787_RC	110	157	118	101	157	117	156	100	162	99
TATGAACGCTCTTTCG	alt_1787_RC	60	75	96	65	65	70	75	55	75	68
CTAACCAAACTATCAA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CTGATGGGAGAACAGT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CCGTTGTCCACATTTA	alt_1787_RC	4	4	7	4	11	3	9	3	14	0
TATACAGGGGATGTTG	alt_1787_RC	20	22	19	9	33	18	29	22	29	17
CAGAGATCTAGAACAG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TTACCTAGTCTTGGAT	alt_1787_RC	4	13	8	4	16	5	14	2	16	3
TGGGCTTGAACTCTGG	alt_1787_RC	8	6	7	4	11	5	10	4	8	5
GTGCTGGGGTTATTAT	alt_1787_RC	24	43	30	26	43	34	52	14	49	20
GGAGGGGACTTGGAAA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCGCCGTAGCAGCTTT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTCCTGGTGGCA	alt_1787_RC	2	3	5	2	5	4	7	5	4	2
GGCGCTTCCACACATT	alt_1787_RC	17	16	27	17	13	16	21	17	13	7
TTGTATCCCGCCCAGC	alt_1787_RC	21	39	30	18	40	22	38	20	35	18
CCCCGATCGTTGTCGA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TTCAAGCTATGTGGCG	alt_1787_RC	5	8	2	8	3	2	6	6	4	8
ATTCAAAATCCCGCTA	alt_1787_RC	13	13	9	14	17	8	20	5	24	18
TCCCCAGCCATTAGGG	alt_1787_RC	83	149	131	101	160	81	165	91	179	98
GTACAACATGATTAAG	alt_1787_RC	25	29	22	20	32	20	35	21	37	17
CACCTAAGTGATACGG	alt_1787_RC	22	24	41	30	25	43	48	35	40	26
GGGTCTGGCGCCAAAC	alt_1787_RC	79	59	89	55	48	57	78	51	71	71
GCGTTCGTTAATTCAC	ref_1787_RC	9	16	15	15	21	10	14	19	17	3
AGATTCTTCTTCGATT	alt_1787_RC	42	63	49	47	60	46	66	43	54	49
ACCGTCGTAATTGGCT	alt_1787_RC	3	6	3	1	5	2	5	2	9	4
TACATGTGCACCCTAT	alt_1787_RC	30	40	31	30	46	35	41	26	50	33
AGTGGGTAGCACAGTC	alt_1787_RC	2	4	9	1	6	5	5	4	4	0
TGTGTGATTTGTAGTA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCTACAACCGCCGGGA	alt_1787_RC	7	8	4	3	4	2	5	1	3	5
TATCACTAGAGGTAGT	alt_1787_RC	27	37	48	36	36	38	53	25	51	23
AGCGTTATATTTTTTG	alt_1787_RC	51	73	45	55	59	36	55	43	61	37
GGGGCATCGGTCATCT	alt_1787_RC	4	5	1	10	3	7	4	2	10	6
ATTCATGCAAATATCT	alt_1787_RC	12	17	19	19	17	23	26	14	15	14
GATATCAACGTCAGCG	alt_1787_RC	7	10	11	4	12	7	8	9	9	4
ACACATTCAGTAATAA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CGGGCACAATTTTCTT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ACTGCGTCTTGCTGCA	alt_1787_RC	27	35	24	23	40	33	36	23	42	17
GTCACGCGTCTAGAGG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCCACTACTTCTATTT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GAGTCTTACAACAAAG	alt_1787_RC	65	91	66	65	89	72	92	53	72	50
TACGTTACGTTTCAAG	alt_1787_RC	24	30	38	36	52	27	41	24	40	35
CCCCATTGCACTGGTT	alt_1787_RC	8	15	8	12	12	9	26	11	32	7
CTGCACCTTTGAAACC	alt_1787_RC	24	22	30	28	32	15	46	21	39	17
CAGGCTTGTTGTTTCG	alt_1787_RC	92	115	94	94	118	100	115	71	139	89
TATTATTGAGGGTTTA	alt_1787_RC	2	4	7	13	8	7	15	11	9	7
GTTGCTCAAGTCCGTG	alt_1787_RC	22	24	18	15	29	21	26	12	32	18
TATCTCTTGGTTGCAT	alt_1787_RC	52	85	59	39	56	44	58	50	64	45
TGAGAGAACAGAATCG	alt_1787_RC	16	45	38	18	30	28	49	37	33	27
GTGGCGCAAACGCATC	alt_1787_RC	64	117	98	92	123	78	130	74	134	65
CCCATCCGTTTCTTGC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GACCAATCTTACCCGG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCGATCATTTGCCCTG	alt_1787_RC	5	4	4	10	4	5	8	1	8	4
GTAGTTGGTCAGGTAG	alt_1787_RC	19	27	21	22	29	14	30	29	23	16
AGCCAGTTTAGCAGAC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ATAGGTGAAAGGTTTG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
AGTCGGCGTGTCAACA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
AATTCCTGTCAGCGTG	alt_1787_RC	22	21	25	18	39	23	27	35	32	13
AGTTATCACAACGGTT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GCGATCCCGCATCGAC	alt_1787_RC	12	18	15	9	16	7	14	8	12	8
ATTCACTAAACTCTTC	alt_1787_RC	50	40	31	41	48	34	36	44	55	34
TGTAGAATAATTAGGG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CGGCTAGCCATGTTAT	alt_1787_RC	32	46	38	38	57	25	67	48	64	33
ACTGCTAGCGTGAGTA	alt_1787_RC	22	52	34	34	57	29	39	35	37	15
TTCATGTATGCTCGCA	alt_1787_RC	42	55	55	38	70	60	49	44	57	34
CCTCTATACGATTAGT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CAGATCCCTGAGTTTG	alt_1787_RC	25	36	31	31	52	32	35	25	46	30
AGACGGACAGGCTTGC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
AGATCAATCACTCAAA	alt_1787_RC	29	32	33	18	39	12	34	17	41	25
CTATATATTACGGATT	alt_1787_RC	45	58	61	46	65	37	71	51	68	64
AGTTTGACAGCCGCTC	alt_1787_RC	47	89	72	62	77	46	126	32	91	41
CTCAGTAGTTGGTGGT	alt_1787_RC	19	49	44	31	58	33	39	27	48	26
TCTTTAGGACCAACTT	alt_1787_RC	2	3	2	2	2	1	1	3	3	0
TATGATAAATGGCTGT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ACCGTGTACCAATTTT	alt_1787_RC	0	2	7	5	1	4	5	2	2	3
GAATTACCACATTATG	alt_1787_RC	27	50	36	42	46	40	57	37	42	33
TATGATACCTGGTTCT	alt_1787_RC	98	110	94	77	103	74	97	67	122	66
GGGGGATCGAGTAGCG	alt_1787_RC	59	96	75	77	100	66	74	63	101	61
TAGCCACGTGAGGATT	alt_1787_RC	5	17	8	6	8	8	18	7	8	5
GTTGTTATAAGATAGC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CTATATAATCTGTTTG	alt_1787_RC	16	28	19	19	22	31	21	10	26	21
TGTTTTCAGTGCCCTT	alt_1787_RC	5	17	16	10	18	9	25	15	23	7
CGTTTCGTGTTATCGC	alt_1787_RC	4	6	4	2	0	3	1	4	6	0
GAATAGGCTGGGAATC	alt_1787_RC	0	3	2	2	2	0	4	1	3	3
GCTATCTTTTCTTATT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TACCCGGACCCGATTC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TTAGATTTTAATCACA	alt_1787_RC	95	125	115	101	113	85	133	93	135	78
ACACAGATTATAGCCT	alt_1787_RC	3	14	8	8	11	5	13	2	15	10
CAGTAGTATACTCACA	alt_1787_RC	7	21	9	11	19	6	22	9	23	9
GGTAAAGGTGTATCGG	alt_1787_RC	51	74	43	57	93	53	85	42	87	31
GGTTCGAAGTTCTGCG	alt_1787_RC	72	91	55	43	70	49	90	34	89	61
TACTCCCCCTCCCATG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CGTGCTTCCCTGTGTA	alt_1787_RC	23	22	17	24	33	14	16	18	30	18
GAGCGTTTACGTTTCA	alt_1787_RC	33	26	23	27	33	19	41	23	42	23
TTATCCCTCGTCGCTG	alt_1787_RC	37	104	37	23	108	29	90	41	102	32
CGCCGGGTTGCCAATA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GGTATCGGAACGATCA	ref_1787_RC	57	49	56	51	51	59	38	41	39	51
ATAACTTTTTGAGGTG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CGCTTGCGTTATCCAA	alt_1787_RC	3	7	2	12	4	3	2	1	10	2
GCCAGGAGCGGCCTCG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ATTGCACAGCGCCGGG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GACTAGCGACGTTACC	alt_1787_RC	30	40	45	37	57	42	44	39	51	26
TTATGCATTGCTAGCG	alt_1787_RC	19	56	40	40	54	32	51	31	69	26
CCGTCTCCGTATAGGT	alt_1787_RC	0	10	1	0	4	0	3	0	4	0
GGAAAGCGCCCACTCA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TGCGGTAGTGTTGCCC	alt_1787_RC	11	19	21	22	24	27	28	12	19	7
TACGAGATAGTACGTG	alt_1787_RC	8	13	8	12	17	10	24	7	23	10
GGCAATGCCGGCTGGT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TGAGCAAGAATGTATG	alt_1787_RC	13	15	10	5	18	8	16	3	11	5
CAGACATAATCCTTCT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GGTGATGGAACATCGA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TATGATACCTGGTACT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GAGAGTGTTCGCTCTC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TGCTAACCGCTAACGT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GGAACTACTCTTTTAG	alt_1787_RC	12	10	10	11	6	9	18	12	8	8
CGGACAAGTTGTCACC	alt_1787_RC	56	74	84	63	92	47	79	40	82	51
CCGACGACAATGAGCA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
AGCCCCTTGAACCGGG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TAATGGAGTTCACACT	alt_1787_RC	110	137	88	84	103	87	120	85	148	73
TGGGATTAGAACCGTT	alt_1787_RC	20	36	33	20	36	18	41	25	53	32
CACGGGCGCCTAACTG	alt_1787_RC	0	0	0	0	0	1	0	0	0	1
GCGTAGTGCGGTAATC	alt_1787_RC	14	19	17	8	13	17	20	15	12	12
TTAGAGCGTTCTGACT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CCCGGTGTCTTGCATG	alt_1787_RC	4	10	5	6	3	2	5	4	4	2
GGGTTTGGCCTGGACA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCCCACGTCTTTTTAT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CAGTTTTTTTTAATGC	alt_1787_RC	3	7	6	5	1	4	7	6	11	3
GATTTTTAAGTACCTA	alt_1787_RC	43	65	54	45	55	72	58	40	78	32
TTACGATTATTCTTAG	alt_1787_RC	4	3	4	1	7	3	5	3	1	5
GCTAAGTCACGCGACG	alt_1787_RC	72	68	101	75	77	72	98	76	77	61
ATCAATTTCTTGATTT	alt_1787_RC	4	4	4	5	5	7	9	10	7	5
TTCCCTTGCCTACGGT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCCGGCTATTATTCGC	alt_1787_RC	5	20	7	10	19	11	22	8	19	11
CTCGGTTCCAGTGCCC	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GCACACTTGGCCCGCG	alt_1787_RC	1	8	3	0	2	2	4	2	2	3
AGTTTATGAAAAACTA	alt_1787_RC	24	32	36	26	22	22	31	19	30	24
GACAGTTTTTTCACCA	alt_1787_RC	7	10	12	7	11	4	21	7	16	8
GACAACGTAGTAACTA	alt_1787_RC	14	19	9	5	19	4	15	8	10	13
TGTTGGATGTTATAGA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TGCTGACGTCACCTTC	alt_1787_RC	3	8	16	8	8	8	7	3	8	6
TTGATATTTCTTTAGA	alt_1787_RC	25	35	33	32	30	33	23	32	32	19
CGCCGTCTGTCGGAGT	alt_1787_RC	19	23	20	12	42	15	27	21	24	20
GTTGTCAGCTGAGAGC	alt_1787_RC	43	44	28	34	51	44	41	37	54	36
ATCGTGTTATATTTGG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TACTACCGCAGTATGT	alt_1787_RC	0	0	0	1	0	1	0	1	0	0
GGTGCCCAGGTACTTG	alt_1787_RC	61	84	75	59	91	36	87	54	77	31
GGTGCTTTCACCGATT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
CTGGTACGCCTTCTCC	alt_1787_RC	5	11	4	9	16	3	10	6	10	0
CATGCTCCGTCTGGTG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GTCATTTTTCTGTTAC	alt_1787_RC	29	24	36	26	27	23	35	23	40	34
TACTACCCGATCCACA	alt_1787_RC	19	25	24	24	32	17	27	18	43	9
CTTGTTCGTGACAGAA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCTAGGTATCTGATTC	alt_1787_RC	76	124	88	76	132	74	136	68	143	65
TTGTGCTAGGGTCTGC	alt_1787_RC	3	13	9	9	8	11	18	7	15	7
TCCGCCGGAGCACTGG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ACTGTTTATACTAGAC	alt_1787_RC	7	18	13	6	27	8	10	6	16	14
TCTTACTTCGGTAGTA	alt_1787_RC	16	38	30	34	27	27	36	15	30	33
ACGGCTGTACCTAGAT	alt_1787_RC	9	5	8	4	3	8	9	7	6	5
TGGAAGCTGGCGTTAT	alt_1787_RC	44	63	83	46	79	53	78	50	82	59
TCTCTGTCACTTCCCC	alt_1787_RC	21	24	14	17	19	14	37	21	27	15
TCCCGTTCTTAGAACC	alt_1787_RC	3	6	1	1	3	3	5	2	4	2
CGAGCGCCAAGCATGG	alt_1787_RC	38	27	41	23	32	38	34	21	40	24
GATCTCGATCCTAAAA	alt_1787_RC	10	7	3	11	10	2	6	6	6	5
TCCACCCCGTGTCTTG	alt_1787_RC	11	15	8	7	19	10	18	3	22	2
AAGTCAAACTATTTTT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TCGGGTAATATACGTG	alt_1787_RC	39	67	45	42	65	41	83	38	53	29
CGTGCTATTGGTTCGA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
CAGTCAGCAATATAAA	alt_1787_RC	131	217	175	142	214	124	195	146	210	146
TCCACATCGGTCAGTG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
TTTTGCCCGTCGTATC	alt_1787_RC	1	3	2	1	1	0	0	1	6	2
TGCCAGTTTAGCAGAC	alt_1787_RC	24	27	20	29	30	19	26	18	23	14
TACCTCTTTCCGAGCC	alt_1787_RC	9	16	11	4	26	9	17	10	17	9
ACTTTGTTTTATGTTT	alt_1787_RC	20	28	39	15	24	13	29	31	26	15
GAAGCCAGGTGTAGAG	alt_1787_RC	11	19	5	14	12	12	25	8	21	7
CGCGGATTCAGTTTAA	alt_1787_RC	15	16	16	14	18	7	15	22	25	23
AAGTACTGGATCTCTA	alt_1787_RC	41	44	61	51	50	34	80	43	58	25
GCTGCTACTTGCCCAC	alt_1787_RC	18	41	42	33	31	39	72	28	48	16
ATCGCGCTGCTATTCG	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGGTCTATTCTG	alt_1787_RC	35	40	29	26	34	26	42	25	34	20
GGCCAGCGGCCGTAAA	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
GTTGGGGTATATAAGG	alt_1787_RC	14	16	11	10	20	7	14	10	24	3
AACGATGTTCCCGTTA	alt_1787_RC	16	27	26	17	29	14	23	12	27	18
TGTCTTCCGATCATAT	alt_1787_RC	3	4	3	1	4	2	7	0	3	2
ACGCAGACAAGGGTTT	alt_1787_RC	0	0	0	0	0	0	0	0	0	0
ATATCACTTCTTAGCC	ref_2853_upstream	238	133	279	258	139	256	135	259	147	231
CTGGTTACATGCCGGC	ref_2853_upstream	160	74	174	152	76	119	71	147	65	123
CGCCCGGTAATCCCCC	ref_2853_upstream	229	104	243	213	104	228	93	209	105	191
CTAGATTTTGTATTAC	ref_2853_upstream	9	2	8	8	1	12	10	9	4	10
TTGTAGCGAGGTAGCG	ref_2853_upstream	8	7	11	15	1	8	7	9	10	10
TGGTTGTCCAATGCAT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTGTCTCACCACG	ref_2853_upstream	105	60	128	109	51	124	60	104	76	118
CGACGCTCGGGGCTTA	ref_2853_upstream	139	80	192	157	86	137	70	137	92	129
AGTTCTCACAAGCGCC	ref_2853_upstream	86	38	93	75	42	64	36	46	47	64
GGGGTTTTATCCTTAA	ref_2853_upstream	39	24	58	51	31	41	25	58	28	30
GAGCAGGATTTAACCG	ref_2853_upstream	1026	414	1221	1040	421	961	433	929	459	901
TGTGTTCAAAGGATGC	ref_2853_upstream	74	61	103	80	60	79	65	55	64	55
ATACGCATGTAGAACT	ref_2853_upstream	26	21	32	23	9	19	15	22	14	35
CTTCGCCACTTGAAAC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGACTCGCCCCGG	ref_2853_upstream	63	37	75	49	42	65	34	57	46	52
ACTCTCATAGGCTAAA	ref_2853_upstream	20	29	30	19	26	12	27	27	22	17
CAGACCAACTGTCCGG	ref_2853_upstream	34	22	56	36	22	25	25	42	25	31
CTCACTAATCAATGGC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTTTTTGGTCAGA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CACGCATGCCCTGTGT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GACCGTGAGCTATCCA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
ATCAAAGTTTTTTCTG	ref_2853_upstream	180	104	218	153	133	156	137	193	151	164
CTCGTCTTATCAATTT	ref_2853_upstream	67	62	102	68	51	67	68	62	58	64
GCTTCATACTCATCGG	ref_2853_upstream	77	47	88	90	38	82	43	70	44	87
GGTTTTTCGACTAATT	ref_2853_upstream	172	87	144	131	93	106	87	119	107	111
GCCGTGCTTATTCTTT	ref_2853_upstream	36	30	39	36	20	38	25	27	15	21
GGGCCGGTTGTTAGTC	ref_2853_upstream	50	36	82	60	46	56	48	69	47	58
CGCCGAGCTAAATTCT	ref_2853_upstream	22	9	20	25	8	20	11	22	9	16
CATGGGTCTTCCGGGT	ref_2853_upstream	2	0	0	0	0	0	0	0	0	1
AAACGGGGTCGGATCA	ref_2853_upstream	102	47	120	97	72	96	56	88	55	86
TCCGCCCTTTAACATC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTATACCTGTTCC	alt_2853_upstream	62	44	99	83	62	76	49	63	46	67
CCGTTAGTTCATTGGG	ref_2853_upstream	149	99	180	167	100	133	111	152	103	144
ACAAATGCCTTCGGTG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGCGTAGGCTGTG	ref_2853_upstream	38	19	47	24	25	24	16	32	23	27
AGTATACTCGCTGTTC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTCATCATTCAG	ref_2853_upstream	26	16	44	46	23	33	18	41	15	29
GCTCTCTTGTCTATCC	ref_2853_upstream	13	7	18	8	10	12	8	14	3	5
TAATAGAAGGCTCTCG	ref_2853_upstream	48	32	35	36	14	45	17	25	20	35
TAAGTATAAGCTCTGC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TCACTACAAACGTTGT	ref_2853_upstream	67	49	68	76	53	62	64	49	52	61
CGAGTCCGATCGTTTG	ref_2853_upstream	21	15	26	23	16	20	20	23	6	17
TAGTCCGTTCCCTGTG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTTAACATTTCTCTAT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCCTTTGTTGCGA	ref_2853_upstream	34	18	37	24	29	23	21	18	19	23
GCCTCCAAATCCGCGC	alt_2853_upstream	77	50	117	96	49	97	36	105	38	79
CTTAAGGTCACACGAT	ref_2853_upstream	126	71	155	122	59	110	57	114	62	97
TGTGGTTGGTATGTAC	ref_2853_upstream	147	110	162	160	98	116	88	145	85	130
TCTTCCGGTGGTTGCA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGTTGCATTATT	ref_2853_upstream	21	14	25	12	7	17	14	13	20	17
GACGGGGCTCATTCAG	ref_2853_upstream	11	18	40	31	13	11	15	18	18	9
TGCCCATATTGGGGCC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CATTTATAGAGCTCTT	ref_2853_upstream	114	76	145	107	62	92	67	127	72	92
GATCGTCACCGTGTTG	alt_2853_upstream	13	5	19	12	10	13	11	14	6	6
TGTCCTTAGTTTCCAT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
AAACTCCACTCGTGGA	ref_2853_upstream	25	13	24	30	11	24	19	21	16	29
ATCGCATTATGTGCAG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
ATTCAATGGAGTCTTA	ref_2853_upstream	72	42	77	70	57	50	46	50	42	63
CGCTGGCAACTACTCC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CTCAAAACGGGATTCG	ref_2853_upstream	19	9	13	17	7	19	9	16	10	12
GGCAATCAATCAAGGG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GGATGATCGATGAATC	ref_2853_upstream	159	73	192	157	99	168	83	166	77	170
AGGTCTTTTCGCCGCT	ref_2853_upstream	65	38	86	73	63	75	48	55	43	59
ATTAAAAAGGTGGAGC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
ACACCAACGCTGCGAG	ref_2853_upstream	11	20	20	11	29	15	21	19	17	14
GTTAGTTAGTTATGGG	ref_2853_upstream	34	19	30	32	20	31	25	31	27	29
CCGCCTCCGGGCCTAA	ref_2853_upstream	16	8	14	19	7	19	5	11	15	11
ATTTCTGCGGGGTCCG	ref_2853_upstream	5	15	15	2	9	9	9	10	6	7
TTCATTGCGGGTAGGT	ref_2853_upstream	141	96	175	136	88	145	90	143	78	107
AAGCCGGGCGGAGTAC	ref_2853_upstream	25	24	29	30	17	31	12	21	17	23
AGTGATCTGATAACTT	ref_2853_upstream	5	5	8	2	8	4	0	4	2	4
GTACCCCCCGATTCGT	ref_2853_upstream	21	34	38	22	48	13	58	16	53	26
TTTTCCCATATCGTGT	ref_2853_upstream	78	35	74	65	33	58	40	50	55	62
ACGATATTTTTAATGT	ref_2853_upstream	63	28	56	46	30	52	17	59	19	46
TAAATATTCCCGCAAA	ref_2853_upstream	5	1	8	7	2	6	3	9	5	5
GGGACCGCAGTCTCCC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CCTATAATGCATTCTC	ref_2853_upstream	54	31	80	73	23	55	33	48	37	47
ATCACTCGTATCATGT	ref_2853_upstream	37	34	51	38	39	42	32	46	34	50
TAAAGACAGCGTACGC	ref_2853_upstream	104	56	144	117	54	87	62	120	67	109
TGCAAGCTCACTGGCA	ref_2853_upstream	54	70	93	82	56	97	44	71	37	60
AAACTTCGTGCGGATC	ref_2853_upstream	86	41	80	76	43	69	55	66	40	50
GCAGCTACCATTATTG	ref_2853_upstream	23	35	33	36	43	33	34	37	29	23
TAGTTAAAGTATAACT	alt_2853_upstream	107	83	107	134	72	99	57	102	67	119
GCAACGGACAAATCAG	ref_2853_upstream	17	7	25	23	16	25	10	18	10	20
CCCAGTCAAGCAGGCG	alt_2853_upstream	7	1	5	4	2	9	5	1	1	4
TGTTCCAATATACACT	ref_2853_upstream	58	37	64	65	38	48	47	50	32	38
CTCGTAGAGCTAATAC	ref_2853_upstream	16	17	30	23	20	19	13	21	19	16
GACCTCACCACGTCGG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGCAATGGTAACGCTC	ref_2853_upstream	14	6	9	13	5	9	7	6	9	3
CATCGTGTATCTCTTC	ref_2853_upstream	37	19	40	31	18	36	16	31	24	20
ATTCTTATTTCCCCCT	ref_2853_upstream	13	4	18	22	3	16	4	7	4	11
TGAGTTCATAAATGAC	ref_2853_upstream	111	71	150	125	74	120	69	102	69	108
TATCCGCTGGCAATGC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TAGAAGTGTCGTAATG	ref_2853_upstream	103	62	145	107	72	125	58	106	70	96
ATCGACCGCGCCATAG	ref_2853_upstream	191	108	249	233	89	234	122	159	123	207
TGGGAAGTCAGCGTAA	ref_2853_upstream	17	13	34	33	14	20	11	16	13	16
CTCAAGCGCACTTTTT	ref_2853_upstream	20	16	24	21	11	16	17	18	21	23
GTGGAGTTCATGCGAC	ref_2853_upstream	50	26	45	50	39	51	35	55	23	52
AGGAGTCCGCCCATGA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGAGCATTTTAGA	ref_2853_upstream	55	29	35	51	28	49	24	49	20	50
TACGTATCTGCATCCA	alt_2853_upstream	106	49	104	95	62	83	67	93	51	93
GTCGCGCGTTTGCATC	ref_2853_upstream	132	96	179	161	112	129	121	166	94	137
CTTGGTAACGCCTGAT	ref_2853_upstream	35	9	35	45	19	40	14	29	20	25
ACCTAAATTCTGGGTT	ref_2853_upstream	20	5	20	5	8	13	11	10	9	13
AAACTGGCTTGGCAGC	ref_2853_upstream	66	31	61	75	31	68	32	63	28	69
CATGTGCTACCGTGTG	ref_2853_upstream	121	74	149	145	67	117	84	123	109	93
GGGACTGTCATCATGG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTCTGGCTTTGGT	ref_2853_upstream	33	21	40	35	24	27	27	43	28	38
GGGGTTCTATTATCAT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GAATTGTCTTTCTGGC	ref_2853_upstream	8	11	10	16	13	12	11	9	20	9
GTTCTGACGTTGACCC	ref_2853_upstream	68	43	74	84	46	69	44	60	58	63
GCTCCATGAGACCCTG	alt_2853_upstream	524	277	706	528	259	527	324	534	310	508
AAATAGGTATGTGAGC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGAGGGCGTTCAC	ref_2853_upstream	236	115	287	230	125	197	134	191	147	150
CGTTTGCAATTGATGT	ref_2853_upstream	91	55	104	88	53	104	76	92	41	98
CTGAGTTGAAAGCGTC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GTAGAATCTCTTGTCT	ref_2853_upstream	14	12	14	17	8	13	7	11	7	11
GTGATCTCCTATAAGA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CACTGTATTATGTCTT	ref_2853_upstream	10	7	18	22	8	16	10	11	15	8
TTTATTTGCGACTCTA	ref_2853_upstream	22	11	25	20	11	27	11	29	23	24
GGGATCAGATACCATC	ref_2853_upstream	78	43	73	93	49	69	35	67	57	75
GAGCCGATCACACTAA	ref_2853_upstream	96	58	125	116	56	113	35	78	58	104
TATCGACTCCACGCTC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGTGTTCAGTGTA	ref_2853_upstream	80	84	108	113	54	78	67	97	76	81
TGATAAGTAACGCTCT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
AAATTAGGGCCTACAA	ref_2853_upstream	150	92	170	139	83	161	78	142	79	148
CTGATCACCCTCCGGT	ref_2853_upstream	218	130	265	268	123	184	118	219	108	244
CACACGGCACCCAGTA	ref_2853_upstream	91	61	155	92	76	93	61	103	51	88
TCGCGCATATGTTTGC	ref_2853_upstream	45	31	69	66	42	51	33	50	36	48
GCCAACGGTTGATATT	ref_2853_upstream	103	60	127	118	76	93	64	112	58	94
AACGAGGCTCGCATTC	ref_2853_upstream	3	2	0	2	2	4	5	5	3	1
TGCCATTTTTTCATCC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TACCCATTCTACATAT	ref_2853_upstream	53	53	70	63	54	68	41	64	47	55
CTCCGATCCGGTGCCA	ref_2853_upstream	9	6	10	5	6	14	12	7	6	5
CCACCGCGGTTCGATT	ref_2853_upstream	28	29	37	42	26	32	27	32	18	26
ACCGTATGGCGAGAAA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCTTCATTGTGCT	ref_2853_upstream	40	19	48	65	35	36	36	47	31	50
CAGGTAAAGAGTCCGC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGCTTATTCGTGT	ref_2853_upstream	17	7	17	9	15	19	4	9	5	10
TGTTTCTTACGTAAAA	ref_2853_upstream	29	23	41	29	11	17	17	16	14	20
CGCGTATACCAATATC	ref_2853_upstream	769	394	878	788	440	683	502	748	475	692
GATTGTCTGGAACTTA	ref_2853_upstream	74	40	72	85	56	80	51	71	46	62
CTGCACGCTCGTCCTT	ref_2853_upstream	125	72	146	130	61	130	68	115	76	91
TCATCTATAACCACTG	ref_2853_upstream	1	3	11	11	3	6	9	3	6	6
TGCCTTATGGGGGTTA	ref_2853_upstream	26	27	46	31	16	30	16	32	24	22
ACCCACTTCTGTGGTT	ref_2853_upstream	27	11	39	28	10	27	8	22	19	30
TCAATCTCTTGTTCGC	ref_2853_upstream	452	265	544	473	259	425	279	371	307	304
CCTGAACGCGCGTTCT	ref_2853_upstream	36	19	37	44	15	23	16	36	26	31
GAGTCCTTGTTCAACA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCCTTCCTCTGGT	ref_2853_upstream	125	77	126	163	69	129	77	139	99	114
CCACGAAATTTCATCC	ref_2853_upstream	8	8	12	9	4	9	9	9	12	15
GCCCTTATTGTGTCGA	ref_2853_upstream	68	38	104	73	64	79	40	50	59	68
TCTCAGACTCGCTCAC	ref_2853_upstream	3	6	14	10	4	6	3	2	8	6
ATCTTTCTCCCGTCGT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
CCATCAACTAATACGT	ref_2853_upstream	13	12	24	19	10	23	9	27	11	11
TTAGGTGGTGCTAATT	ref_2853_upstream	115	90	135	122	64	99	59	111	73	103
GCCTGCCGAAATGTTA	ref_2853_upstream	70	54	92	110	68	74	72	74	70	72
TGTAAACATACTGTGA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTAATCAGTGTTG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGCTTGCTTCCGA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACAGACATGCTC	ref_2853_upstream	231	122	262	239	118	218	118	218	132	196
GCGTCTGATTCATCTT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTTGTACATCCCC	ref_2853_upstream	2	12	3	4	17	4	17	7	9	5
ACCTTTTTTTTCGGCG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TCACCGTAGCCTGTGT	ref_2853_upstream	16	18	11	17	20	20	17	13	14	12
TGTGTTGTGTTACGGT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCCACAATAGGCATCT	ref_2853_upstream	66	45	84	68	58	81	56	58	54	81
CAGTAGGTGGAGTCGC	ref_2853_upstream	219	145	270	230	166	230	150	187	195	178
CGATTCAAACCCAGGC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTCCATCCAGAGG	ref_2853_upstream	123	79	154	114	70	98	74	122	63	97
CGGGCTGATTTATTTG	ref_2853_upstream	113	30	125	97	59	70	47	94	55	66
TGTAAGTTGAAGCACA	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTCCCGACTCAT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCCACTTTGTCTGATC	ref_2853_upstream	7	6	9	11	1	6	5	11	6	6
GCTGGTTAGTATCCCC	ref_2853_upstream	2	3	2	1	4	2	9	4	5	0
CCCACGTAGCGGTGCG	ref_2853_upstream	259	152	332	347	188	264	156	253	217	246
GACTGCGAACTGATCG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCAGCTCATACAT	ref_2853_upstream	25	23	47	42	18	33	20	40	13	40
TGCTTGTTACTTGACT	alt_2853_upstream	50	29	55	45	41	45	33	51	30	43
AATTGGCCGAAGTTGG	ref_2853_upstream	51	31	75	57	26	49	43	40	27	44
TTCTACATCTTTATAC	ref_2853_upstream	5	2	13	7	2	7	5	6	3	6
CGTTACCAGCTATAGT	alt_2853_upstream	139	92	212	169	94	166	84	174	124	147
GTTCAACCTGTCCGTG	ref_2853_upstream	43	27	49	57	28	44	21	44	34	30
GTTTAAAGTGCGGACT	ref_2853_upstream	2	2	7	5	2	4	2	5	3	0
CGTTCGGTATCCTACG	ref_2853_upstream	108	62	89	78	53	85	38	92	55	88
ACCTTTTTTTTTCGGC	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGTTACCTTTCGT	ref_2853_upstream	35	20	41	41	33	41	19	28	25	38
CTGCTCACCCCACCAC	ref_2853_upstream	45	34	66	63	43	82	27	53	45	43
AGGCTGGGTGTATCGA	ref_2853_upstream	22	5	20	16	5	8	5	8	13	12
ATCGCATCGTGCGATC	ref_2853_upstream	0	0	0	0	0	0	0	1	0	0
AATTGTCTTGCTGAAT	ref_2853_upstream	65	56	114	88	57	61	58	55	62	71
CCAAGAGATCTCTCAT	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
AATCAACTCGGCATAC	ref_2853_upstream	73	43	80	77	51	63	43	54	44	50
TACTTGCCAACATTTT	ref_2853_upstream	36	11	41	37	23	29	15	23	20	29
TACCACCTCAATATAG	ref_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTAGTGCGGGAT	ref_5619_new	27	53	29	30	52	27	74	21	68	33
TGTTCCCGTTCTCTAG	ref_5619_new	0	0	0	0	0	0	0	0	0	0
AGGGTGACTGCGGTAC	ref_5619_new	2	1	2	3	4	3	6	0	0	3
CGGCTTAATCCTTAGC	ref_5619_new	41	39	34	27	58	18	38	15	47	22
TTCTTGTCTATTATCT	ref_5619_new	48	73	43	53	64	34	73	31	73	39
AGTACTCGATTACGCG	ref_5619_new	4	12	8	11	9	6	6	10	18	4
CGTCCGGAGATTTATT	ref_5619_new	97	146	103	95	144	72	171	61	148	66
CGTACGACCCCTTGGA	alt_5619_new	29	69	30	26	47	32	72	37	58	33
CATTTTAAAGTCGTGG	ref_5619_new	5	7	7	2	10	2	10	3	11	0
ATATTGATCCGTCTCT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
GTTATTTCGCGTCCTA	ref_5619_new	19	23	15	13	29	11	33	17	42	15
ATTCTATTTTTCACCA	ref_5619_new	57	92	72	48	108	60	133	52	106	50
GCGTCGTTATTGATTC	ref_5619_new	36	50	27	29	63	22	56	22	62	24
CTTTGGGCTATTAGTT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TTCCAACGGCTTCAAG	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TGAACCGCGTTTAGTA	ref_5619_new	9	9	5	5	4	5	8	11	6	1
TTACTTCGAAAGGGCA	ref_5619_new	21	45	31	29	53	23	49	27	41	22
AGTAGCATGCTGCTAA	ref_5619_new	5	7	14	4	14	4	10	9	14	3
TTCAGCCACGTATCCG	ref_5619_new	15	69	31	31	51	20	78	31	81	17
TGCTCCTGGGTGGTGA	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CTTGTTGGAGCGATCT	ref_5619_new	66	162	82	69	151	64	155	73	138	81
GTATGAGCAGTATAAC	ref_5619_new	6	12	14	10	22	6	12	8	25	6
GAGACGCTATAATTTG	ref_5619_new	0	0	0	1	0	0	0	0	1	0
TGGCTTGGCCGCCTGC	ref_5619_new	26	49	29	26	62	12	61	26	56	22
TTAAAATTAAAGCTCT	ref_5619_new	38	77	40	46	67	33	72	26	53	22
TTACCCGGAGCTAAGA	ref_5619_new	3	2	1	2	10	4	14	2	6	2
ACGTCTGTAAGGACTA	ref_5619_new	11	24	11	9	18	26	22	14	28	12
ATTCGATGTTGACTTG	ref_5619_new	15	35	21	10	36	19	41	12	34	10
TTTTAGCAAGGGTACT	ref_5619_new	9	16	14	11	21	12	32	12	23	6
CTTAACAATACCTAGC	ref_5619_new	11	33	5	9	28	10	29	13	30	10
ACAGCGGAGATCTGCG	ref_5619_new	20	33	14	18	37	15	24	25	33	22
TGTGACGTTCGTTTCT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TTCGAGTAGAGGTTGT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
GACTGTGCCGATACAT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
ATCTCCAACTTTTAAA	ref_5619_new	43	76	52	46	70	42	79	41	66	39
CCGACATGCATCGAAT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TGTGCCTGCCTGGGTC	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CCGGCATGAGCAGGGA	ref_5619_new	4	5	11	6	11	6	12	2	14	6
TAATGTACCGGCGCAA	ref_5619_new	28	53	46	28	60	30	63	28	69	22
TGCGATTGCGTCAAGG	ref_5619_new	14	22	11	11	22	6	24	8	30	5
TTCGTTACTTAGTTTA	ref_5619_new	1	8	3	4	4	0	13	3	15	4
GATTATTCCAGAACAG	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TTTCCGCAATTTGGGG	ref_5619_new	0	3	0	0	1	0	0	0	3	2
TCTGTTTGGACTGTAA	ref_5619_new	0	1	1	1	4	2	2	0	5	4
TTCAACTCATGCTGCC	ref_5619_new	9	14	11	4	19	12	11	13	16	7
TGATTTCACCTAAGTT	ref_5619_new	4	23	19	16	29	10	30	11	19	9
TAGATGAAGTAACTAC	ref_5619_new	1	5	2	3	4	5	3	0	4	1
TGGGCAAGCTTAGTTT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CAGCGCCGGTACTATT	ref_5619_new	23	36	25	25	43	13	38	13	41	15
TTCGATCCTAGTTAAC	ref_5619_new	12	37	15	18	35	14	34	11	34	12
CGCTTTGCGTTTGGGT	ref_5619_new	13	15	14	19	11	12	27	15	16	20
TTCCCCCGGAATGTTT	ref_5619_new	21	28	28	17	33	25	36	16	32	12
AGTGCGGTGATCATAA	ref_5619_new	35	64	33	32	59	30	50	30	62	27
GGTTTTCGAGTTTGCT	ref_5619_new	44	106	43	34	90	47	96	41	80	38
GTTGCGTCCCGTCCTG	ref_5619_new	9	13	5	11	17	6	3	2	16	9
GCCGACGTCGTTATTG	ref_5619_new	29	53	24	11	47	26	53	19	61	13
ATTACACTCCAGTACG	ref_5619_new	1	20	1	2	11	1	12	3	17	3
CTTGAGCGCAATCCCC	ref_5619_new	8	27	11	13	35	13	22	8	32	12
TGAGTATGTCTGCAAT	ref_5619_new	13	30	11	9	20	6	12	14	27	15
TAATGCCTGGTTTTTA	ref_5619_new	7	5	7	5	6	3	9	3	15	8
CCTGGCGGTTCCGCAT	ref_5619_new	17	50	34	23	35	26	31	23	49	18
CTATTCGTTTCCTTCA	ref_5619_new	0	0	0	0	0	0	0	0	0	0
GTGTCAAGAGTCAAAA	ref_5619_new	36	69	33	35	62	31	73	24	78	24
CGTCCCGCAAGCGTGG	ref_5619_new	37	30	19	21	37	20	44	14	51	14
CCCCTACAAATTTCTT	ref_5619_new	4	7	3	3	19	2	13	2	10	3
GAAGAAGTCTTTAATA	ref_5619_new	47	59	39	34	82	29	65	36	73	32
TACCGGATGCGCGCGG	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CCGATTGTCAGAACTG	ref_5619_new	13	36	17	13	27	7	30	13	34	7
AAGTATTTGCTGCATA	ref_5619_new	17	62	29	22	40	27	62	26	48	20
CCGGCAATTCCGTCTT	ref_5619_new	20	73	38	21	67	27	98	26	91	22
AGGACTAAGGCTGTCT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CCATTCTTATTATTAG	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TGTTAGAGGTATCTTT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CAACGTCTGCGTATTC	ref_5619_new	0	0	0	0	0	0	0	0	0	0
AAACCTATGCGACTAA	ref_5619_new	7	12	6	9	20	5	21	6	16	11
CGGCAAAGGACCCCGA	ref_5619_new	65	89	77	65	109	62	92	44	88	52
CGACGGGGAGCTGGTC	ref_5619_new	14	42	34	23	59	22	58	22	68	28
TAATACAAGTAAACTC	ref_5619_new	0	0	0	0	0	0	0	0	0	0
ACCTGTTTCTGAATAT	alt_5619_new	0	2	1	1	1	0	0	0	0	1
ATTTGGCCTTAACCGT	ref_5619_new	7	10	3	5	7	6	12	0	9	1
AAAGAATCTATGTCGG	ref_5619_new	4	10	5	7	13	5	14	4	6	3
CATGCGTTTTTTGTCT	ref_5619_new	18	22	34	25	20	23	32	11	27	14
ACTGGACCTTCGGACG	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TTTGTGATCATTAAAG	ref_5619_new	42	17	41	29	11	35	22	23	27	36
TTCCAATCTGTCCACT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TTGCCGCGTTTTGTAG	ref_5619_new	7	15	6	9	12	6	21	4	19	9
ACTTGCGATCCCACTA	ref_5619_new	0	0	0	0	0	0	0	0	0	0
GCAGATCACTTGGCTG	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CTTTGTAAGGGCCCTT	ref_5619_new	1	8	3	4	4	1	10	4	6	4
TCGCGATAGGTAGGCA	ref_5619_new	15	15	12	14	21	10	12	14	24	10
ACCATCGGCGGCTTGT	ref_5619_new	7	19	20	12	18	10	29	8	18	15
CGCTCCTCAGGAAATC	ref_5619_new	22	50	19	23	48	14	48	16	53	20
CGGACGTTATCCTGTC	ref_5619_new	0	0	0	0	0	0	0	0	0	0
ACTAATCACTTTGTGC	ref_5619_new	6	15	18	5	29	9	27	3	15	10
ATGGTCTAATGGGTGA	ref_5619_new	11	18	13	11	19	1	14	8	21	5
TTGTGGTACCTTGCAT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
ACCCATTTATCGTACT	ref_5619_new	27	49	21	31	54	24	53	27	50	30
AAGACTGTAGCGGCCC	ref_5619_new	0	0	0	0	0	0	0	0	0	0
TCTACGATGATTAACA	ref_5619_new	18	62	40	29	52	26	63	23	59	23
CGAGTACGTGTAACGC	ref_5619_new	12	19	15	11	32	16	26	11	21	11
GTATTTTTTTGGTCAA	ref_5619_new	6	16	8	6	18	5	12	7	13	8
CCAAGTGCGTCAAGCC	ref_5619_new	0	14	2	0	12	1	4	2	12	2
ATTTCCTGCTCCTGGT	ref_5619_new	1	4	0	5	1	2	2	0	7	0
AATGAGCCGGCGGGAC	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CTGCGGCTTTTCCGAC	ref_5619_new	31	43	29	19	37	21	52	16	36	26
GTTATCACGCCTTTTG	ref_5619_new	30	64	50	35	55	34	64	26	57	24
TACGCCTGTCTCTTGT	ref_5619_new	106	252	126	110	266	110	231	126	228	96
ATTCTTTATCCGTACT	ref_5619_new	27	49	32	22	55	35	53	17	54	28
AGTGTAATAGGGTATC	ref_5619_new	4	3	2	2	7	1	6	0	6	2
CTCTAGGTCTTTCTAG	ref_5619_new	17	29	8	17	32	5	25	15	32	5
ATTGTGAATTCGAGGT	ref_5619_new	0	0	0	0	0	0	0	0	0	0
CTAAAATTGTGTAATG	ref_5619_new	13	16	5	8	15	13	26	3	11	11
GCTTCTGTTGAGCCTG	ref_5619_new	15	16	16	13	27	16	33	9	20	12
AGGGCATGATTGTTTT	ref_5619_new	8	23	6	12	20	5	26	10	32	13
GACGTTTCTGTGAATC	ref_5619_new	0	0	0	0	0	0	0	0	0	0
ACTTAGTGTGGCCCAT	ref_5619_new	4	2	5	5	8	4	2	3	8	3
CATTTAACGTGAACTT	ref_5619_new	53	72	41	34	71	38	89	27	90	36
CGATACCCCCCGATCT	ref_5619_new	8	41	9	7	36	5	39	3	54	4
ATCCCATACTTGGTTA	ref_5619_new	16	53	23	23	40	22	52	16	61	25
CCTGTTGGTGTTATGT	ref_5619_new	12	18	20	8	26	11	30	6	31	9
TCTTCCCCTTACTGTT	ref_5619_new	1	13	4	4	16	4	4	0	10	4
CGGTCTCTTAAGAACT	ref_5619_new	6	13	15	3	11	10	18	3	7	6
TAGGAATTTTGGAGTT	alt_2069_RC	48	36	66	55	27	44	37	52	26	40
GGTATAGCTATGCATT	alt_2069_RC	107	61	123	120	51	93	60	88	51	80
AGGTTACCCTTCCTAA	alt_2069_RC	13	1	16	17	10	9	5	10	7	16
TGGTTGGGTTTGCCCA	alt_2069_RC	11	5	26	15	9	17	11	15	10	15
CATTGGGACGGAAGCT	alt_2069_RC	169	93	215	189	86	158	67	168	62	165
TTCCATGAGCTCTTTC	alt_2069_RC	127	73	175	170	69	178	66	148	74	147
GGTGGTCTTGATTTCC	alt_2069_RC	58	24	50	53	28	60	26	57	14	58
GGATTGATATGCGAGC	alt_2069_RC	12	1	25	14	4	15	5	15	9	8
GGACCGGGGCCGCTGC	alt_2069_RC	21	7	38	14	9	26	7	15	12	24
AAAACTTAGGTTAGAA	alt_2069_RC	158	78	183	187	68	163	61	165	65	124
TTTCGTTTAATTTTTT	alt_2069_RC	194	73	241	216	78	174	83	171	76	156
TGTTCTAGCGTACGCT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
CACGGCGGCATACGTC	alt_2069_RC	83	41	82	58	43	76	47	73	32	55
ATCGTCATTCCAAATG	alt_2069_RC	121	56	158	155	82	121	67	147	75	128
CGTTTTTAAATAATGC	alt_2069_RC	83	32	92	68	31	76	45	71	21	76
TACGTCCTTGGGTAAC	alt_2069_RC	47	36	71	60	30	62	31	51	31	53
GATTGCGACGTATTTA	alt_2069_RC	79	45	120	93	51	99	50	81	57	81
TTCCGCCAAGTGCACA	alt_2069_RC	142	64	183	165	68	140	79	154	82	128
AGACTTGTTTTGCGAT	alt_2069_RC	84	37	105	84	37	82	54	88	38	86
TAGGTCCCAATTAGTC	alt_2069_RC	938	458	1235	1070	459	993	534	966	497	806
CGCTGGACCCCGCAAG	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TGGGGTCGCGCCTCTA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TGACTCCAGAAACTTG	alt_2069_RC	231	98	226	222	111	184	158	195	134	172
AATTTTAGTAAGCATG	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
GTCAACGTGCTCTGCG	alt_2069_RC	47	24	77	49	21	53	21	54	24	47
ACGCATGCTTCTTCCA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
ATTAGCTAAGTATTGG	alt_2069_RC	24	21	44	35	19	22	17	22	14	27
TCGTTTTGATAGCCTA	alt_2069_RC	40	7	47	30	18	44	18	21	16	39
GTATATGATATCGCCT	alt_2069_RC	121	67	180	157	61	124	67	170	63	134
CGTTAGTTTCCAAGTT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
ATCACAGCTGAAAAGG	alt_2069_RC	135	73	138	125	78	117	75	118	83	126
CAGCGGTAGTCCCTCA	alt_2069_RC	123	76	155	155	88	131	79	140	82	97
ATTTGAAGGCAGACGG	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TCTCTCTCTTTGGGTA	alt_2069_RC	203	96	220	256	115	235	96	219	118	197
AAGCGGTATCGCATAT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
CCTACGAGTCTAATAT	alt_2069_RC	45	55	50	58	49	42	60	47	63	37
ACCTTAAGTCGTTCCT	alt_2069_RC	223	111	275	268	138	217	148	176	107	173
GGCCGATACTCTTCTG	alt_2069_RC	36	19	55	33	25	51	21	46	17	42
TCCGAGACACATTGGG	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
ATTTTGTACGGTTTAC	alt_2069_RC	45	18	67	55	23	46	21	38	28	32
CTAGAGTTTATTACAT	alt_2069_RC	131	56	187	144	65	138	96	136	71	116
TACAAGAATTGGGCCG	alt_2069_RC	53	27	61	53	21	64	30	70	28	47
TACTCTTTGCTGCAAC	alt_2069_RC	129	60	146	142	73	108	71	90	59	121
CAATCTGTCAACCAGA	alt_2069_RC	25	11	31	28	9	30	15	20	21	15
CCTCGTGCAGATTTGC	alt_2069_RC	8	10	8	10	4	5	4	5	4	4
GGGATCATCGTATTTG	alt_2069_RC	106	60	140	131	52	119	74	119	55	93
GTAATTATTTGATACA	alt_2069_RC	4	7	16	15	3	13	10	10	3	12
AACGTATCGGCTCGCC	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TTCGGGTCGGATCTGG	alt_2069_RC	20	8	25	17	14	27	5	28	8	15
TTGTAACGTTCGATCA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TCATGTCGGTTTTCTC	alt_2069_RC	107	36	156	100	44	99	52	115	36	131
TGTCTGTCCCTTGTTT	alt_2069_RC	106	44	137	121	48	109	55	102	49	85
TTACCGGATGTTCAAC	alt_2069_RC	45	16	59	50	23	43	24	42	26	55
TCGCCTAATAAGCCTT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
ACTTATGAATCAAAAT	alt_2069_RC	963	426	1154	1028	481	989	465	1001	494	846
TACATATTGTGTCGAG	alt_2069_RC	48	24	61	49	21	52	29	51	28	59
GCGTCTTTCACCTTAG	alt_2069_RC	30	21	66	36	14	31	16	40	19	21
GGTGTGCCTGTCTTCC	alt_2069_RC	82	23	79	51	35	58	42	61	27	54
GAAAATTGTGCTGTGC	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
ATCAATTTGAGTTTTA	alt_2069_RC	271	135	313	296	138	271	152	240	151	227
TTCACTGCCTAGATGA	alt_2069_RC	42	20	65	52	27	52	27	43	19	42
CAACAGTATTTTCGAA	alt_2069_RC	74	52	126	103	47	62	53	85	59	78
AGGCTTGACAAGTTCT	alt_2069_RC	1	3	1	5	2	4	3	3	2	4
TGTGGGTGGTCCTATA	alt_2069_RC	110	61	144	88	68	90	57	135	49	107
TTGCAACCAGGTCTTA	alt_2069_RC	25	16	32	21	20	30	10	21	19	21
GGTATCCGCGGGTCTT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TGACGGACACACTTAC	alt_2069_RC	156	74	192	142	61	132	86	145	67	114
ATTCAAACAATCTTAC	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
AAGAATTCGGTTAGAT	alt_2069_RC	191	80	232	178	68	217	88	185	93	134
TGTTCATTTTTCTACG	alt_2069_RC	24	16	38	37	22	32	14	29	18	38
CCTTGATGGGTAGGAA	alt_2069_RC	688	327	855	795	366	677	339	598	354	568
ATGATTCCAAAGCTCG	alt_2069_RC	161	79	209	200	67	139	76	166	87	130
TGGGTATAGTTGGTGT	alt_2069_RC	49	19	45	54	19	49	24	37	24	40
TGTTACGTTTCGGGGC	alt_2069_RC	13	6	22	21	13	16	6	16	8	12
ACTCAATGGAACGTCG	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TGCTCCGGGTCAAGTT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TGATTTCTCTCCGAGT	alt_2069_RC	290	119	350	302	94	230	106	231	115	242
GTTCTCTAACTAATCG	alt_2069_RC	46	45	61	52	37	61	30	53	26	49
GATCCGCAGTGCTGTG	alt_2069_RC	5	9	11	8	5	4	7	5	8	7
GACTAAGTCATTACGG	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
GGATTCGTGTCTAGTC	alt_2069_RC	42	13	55	45	21	51	23	45	13	33
ATCTCTGAGCCTCTGC	alt_2069_RC	97	36	126	98	40	74	52	92	50	100
GTGTCAACAATTAGAT	alt_2069_RC	363	179	471	358	207	357	212	345	208	297
CGAATTGGCTTCGAAT	alt_2069_RC	9	1	6	5	1	11	2	8	4	7
TAGGTGCTCTCACCTG	alt_2069_RC	849	491	1051	904	485	855	511	839	523	732
GCCACCCTACATGGTA	alt_2069_RC	70	41	98	97	46	55	47	84	49	69
TACGGGAGCTCTAGCC	alt_2069_RC	42	15	56	45	21	37	19	46	17	41
CTGGGCATGCATTACT	alt_2069_RC	64	30	77	78	42	73	30	55	46	31
TAAGGCTATGTTCTAG	alt_2069_RC	136	72	179	174	72	162	62	131	99	126
GGATCATACGGTCGGC	alt_2069_RC	7	5	21	10	5	12	3	17	5	7
TAATACGCTTAGTGTA	alt_2069_RC	96	49	121	82	22	95	59	109	52	85
TACAAGGTTTCTTGCT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
GGACTGTCATCGATAG	alt_2069_RC	208	68	219	186	97	172	69	178	102	149
ACAGTTGTGCGATGCT	alt_2069_RC	53	45	116	67	36	76	46	89	48	59
TGTAGTATCATGCACG	alt_2069_RC	143	58	164	157	73	141	95	116	70	136
CACGCACGCTAGCCGT	alt_2069_RC	50	25	64	57	22	49	24	29	17	42
AGGGTCTGTTATCTTG	alt_2069_RC	75	38	82	67	39	43	49	54	32	47
ACGAGAGGACTCATGT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
CGCCCTAACCTGCTAG	alt_2069_RC	75	43	112	123	45	110	35	119	61	84
ACGCATGCACGCTACA	alt_2069_RC	265	171	321	357	148	254	160	276	149	261
GTGACTTCGTTTTGTT	alt_2069_RC	68	47	90	98	50	78	27	69	32	76
CATTTGACCCACGACA	alt_2069_RC	58	30	80	67	22	48	31	44	36	48
GTCACATCGTTCTTTT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
CTCGGATCTGGTGAAT	alt_2069_RC	30	16	40	44	16	28	19	45	14	31
TCGTCTGGGCCCGGTT	alt_2069_RC	11	11	13	13	6	19	8	22	4	14
GTCCTCCGTCTCGCGT	alt_2069_RC	114	83	119	141	97	104	88	123	87	101
CGAAGCGATAAACATA	alt_2069_RC	61	61	58	52	83	47	65	59	72	55
TTTGCTTTAAAGTGCG	alt_2069_RC	135	76	172	158	68	109	64	130	69	129
TTGGTCCGCTTGGGCT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TATGGGGGTGAAACTG	alt_2069_RC	34	11	39	36	12	22	20	41	20	22
ATGGGGGGCCAAATTA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
GCCCGCTTATAAGTGA	alt_2069_RC	172	79	214	175	88	165	94	168	88	153
CAATGGCCCAGCTAGC	alt_2069_RC	42	25	63	53	31	30	32	40	30	40
GTCGCGAAGATTAGTG	alt_2069_RC	41	20	67	56	31	46	19	56	22	41
CTTGTGGATCGTACGG	alt_2069_RC	75	38	104	92	41	79	37	76	29	69
ACACGTCGTGTCGGTA	alt_2069_RC	81	31	97	98	32	79	33	58	45	67
TGTATTTATTCGTGTT	alt_2069_RC	39	17	34	30	15	39	18	41	18	26
CTTAGTGGGGTCTTTG	alt_2069_RC	6	3	4	5	4	2	0	10	12	5
AAGATTTTTTTATGCG	alt_2069_RC	8	7	11	16	7	11	6	8	8	9
CCTCTCATCCGCATTT	alt_2069_RC	32	104	65	73	120	51	134	36	117	35
TCTCTGGCCCGCAATC	alt_2069_RC	112	55	124	106	54	117	42	109	53	93
GTGCCGACCTTTTTCT	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
GGATTTTATTCCCGTA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
GCTTAGCGCCGGGTCA	alt_2069_RC	37	24	53	32	18	35	13	30	18	47
CATGTTAAGTTATTTA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTCATAGCGAAA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TTCAGACCAGTGCAGA	alt_2069_RC	144	57	185	152	66	133	79	171	73	147
AAACCGTTCCACTTGG	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
TATGTCCCATTCGCTC	alt_2069_RC	292	144	319	292	141	284	135	300	159	259
ACCTCGGGGCCGGTCC	alt_2069_RC	93	37	101	95	46	76	47	93	58	73
ATACGCCCTAGGCTAT	alt_2069_RC	192	88	236	199	104	166	102	208	103	173
GATGTATCTGTCGGCT	alt_2069_RC	40	33	50	51	31	42	20	54	18	39
AATCCCATGTTGTGTA	alt_2069_RC	84	43	87	95	49	70	42	91	56	86
GCCTTTTTAGTAAAAC	alt_2069_RC	24	17	23	44	10	24	12	22	17	28
GCTCCAAGAGCTCCGT	alt_2069_RC	67	32	101	92	48	82	45	102	35	61
CCCGCAAGTACTTACA	alt_2069_RC	179	168	175	171	215	139	212	169	199	132
GGAAATATAGGTTCAT	alt_2069_RC	75	37	81	76	43	73	40	92	32	79
GGCGACCGTCCCGAAA	alt_2069_RC	6	1	5	8	1	5	10	4	5	13
CATCTGAATTGCGGGA	alt_2069_RC	18	8	20	33	17	29	17	21	14	24
TCCATCAAGCCGTGTT	alt_2069_RC	40	21	45	54	20	39	23	47	13	34
TCGCATCACTAAGGGT	alt_2069_RC	19	8	29	28	18	21	10	36	9	23
TCCACCTGTTCCCTAT	alt_2069_RC	1	7	4	6	7	6	3	7	5	7
ACCGTGCTTGGTTCGC	alt_2069_RC	43	25	51	41	30	34	27	40	33	44
GCGCCCCTCCTTTGCC	alt_2069_RC	59	66	70	67	60	38	89	38	58	44
GTAGTCTTATGGTTAC	alt_2069_RC	184	116	183	185	126	156	106	158	120	138
GGCATTTACATTTGTA	alt_2069_RC	90	59	108	70	36	85	42	85	38	91
ATCGCCAAGAGTTGAA	alt_2069_RC	28	22	34	27	23	24	26	33	7	39
TATCGTCGTGGTTGAT	alt_2069_RC	66	29	109	72	31	70	28	66	31	51
AGGTACAGTGCCCGGC	alt_2069_RC	17	6	13	17	8	11	7	10	6	13
TGCAAATTGAGTCCTC	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
AGATTAGTTGTGTGCG	alt_2069_RC	368	216	470	386	164	304	208	357	211	327
GTCAGGACGGACTGTT	alt_2069_RC	33	24	64	33	24	45	25	43	20	29
GGCCTCCCGTTCGACG	alt_2069_RC	3	6	7	10	7	6	3	6	4	4
TTTTACATACATAGGA	alt_2069_RC	22	10	20	24	8	31	9	12	12	22
ATAGCTAATAGCCTAA	alt_2069_RC	121	67	176	135	72	101	58	121	53	96
TTGCCTTGATACGCCA	alt_2069_RC	0	0	0	0	0	0	0	0	0	0
ACCGTCTATCCGATTT	alt_2069_RC	28	18	25	24	12	21	16	28	17	23
AATCTCGTTTACGTCG	alt_2069_RC	51	36	85	83	27	62	41	57	41	62
AACGTCTGGGCGGCAC	alt_2069_RC	48	23	59	66	25	68	51	65	30	53
ACTCCCGTGTGCCCGT	ref_3966_fdr	1	14	0	2	19	3	10	1	16	1
ACGATGTTACCGCACA	ref_3966_fdr	59	66	48	57	57	64	53	36	56	30
CATCGACGGTCGCTCT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTAGTACCCGTAA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TACTTTGCTCGAAACA	ref_3966_fdr	21	22	31	15	30	14	24	26	34	12
TAGCTGCCGTGCCTGA	ref_3966_fdr	36	39	34	24	29	28	32	42	38	26
TTCCGGCCCGTGGGTA	ref_3966_fdr	9	10	9	9	10	3	18	4	15	7
TGTTCATTGGTACGTG	ref_3966_fdr	15	16	9	17	20	12	14	4	16	13
CTTGGGTGTTCCCTTA	ref_3966_fdr	10	13	16	9	18	12	17	6	14	7
ATTGTTTCGCCCTTAC	ref_3966_fdr	12	22	20	17	14	9	17	9	7	19
GTCCATATCTGATTCC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
AACTGCGATTTATCAT	ref_3966_fdr	18	13	13	17	23	7	15	20	16	12
GACGGTCATATTCCGT	ref_3966_fdr	9	10	5	5	16	8	3	4	3	4
GGCCCCTGGGCTTAAG	ref_3966_fdr	18	18	27	18	19	11	31	18	30	15
TAACTGACAGATAATA	ref_3966_fdr	14	8	19	20	20	19	11	17	21	22
ACGTCTCATCTCGTAT	ref_3966_fdr	11	14	12	6	7	8	15	6	9	11
TGCCGGCCGGTCAGTT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GATCACGCCGGTTATT	ref_3966_fdr	48	53	51	45	49	46	53	49	80	44
GCTAGTCCAAAAAATG	ref_3966_fdr	1	9	3	5	3	5	4	3	3	3
GGTACCACTCTCAGCT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCCAAATCGTTCC	ref_3966_fdr	36	72	49	46	47	36	54	53	58	44
TAGGGTTATCGTATCT	ref_3966_fdr	23	37	35	31	29	32	36	24	40	22
CGCACGAGCTTCTGGT	ref_3966_fdr	25	29	46	26	35	44	30	49	46	20
TCCATGCATACGATTG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
ACTATATATCAGCCAA	ref_3966_fdr	35	46	39	31	55	33	54	26	74	25
TCGGTGGGACTCCCAG	alt_3966_fdr	156	149	222	149	156	154	197	154	172	138
TGTGGGGATGGCTTGT	ref_3966_fdr	20	34	31	35	33	41	27	28	39	34
ACTTTACTTATCCAGG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTCTCGCAATAGG	ref_3966_fdr	8	14	14	12	26	12	21	16	19	13
TATATGACCGATCTTC	ref_3966_fdr	82	118	79	96	117	79	111	65	106	73
TTTGTGGCACGCTTAT	ref_3966_fdr	4	13	8	5	10	10	7	5	11	1
TCACTCGCTTATGGGC	ref_3966_fdr	3	2	2	5	6	5	2	3	6	6
TACTTACCTAGGGCAG	ref_3966_fdr	0	3	2	1	4	0	8	1	1	0
ACAAACTCGTGTCAGC	ref_3966_fdr	7	14	15	8	8	4	16	5	13	10
ACCGCTGAGCTATTGC	ref_3966_fdr	18	18	17	20	26	13	19	19	27	25
GTAGTTTGCTCGTGAG	ref_3966_fdr	3	5	5	3	3	2	10	2	3	2
TGAGAAAGTCAATCTA	ref_3966_fdr	9	17	10	3	11	4	13	7	16	9
GTTGCTATCCCCGCCG	ref_3966_fdr	2	29	18	7	36	8	30	9	32	6
GGATCCATGATGATTA	ref_3966_fdr	33	27	27	31	20	23	16	23	27	19
CCGTGACTATCGCTTT	ref_3966_fdr	6	9	4	1	9	3	5	2	9	1
TTTCCCCAATAAGAGG	ref_3966_fdr	28	38	57	41	40	35	39	29	32	40
CCATCTAAAAAAGGGG	ref_3966_fdr	9	10	15	12	16	10	15	11	13	11
AGGATTTAAAGTATAC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GATCGGCTTTACGGGT	ref_3966_fdr	70	76	87	77	90	85	102	79	76	68
AGGTGGTTGTCTGGAA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGCTGGGAGTCAC	ref_3966_fdr	7	9	10	9	14	7	9	10	10	3
GCCAATTTACCCACGA	ref_3966_fdr	25	33	31	32	43	27	50	34	46	16
TCTTTTGAAAGTGCTC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTTTTTTTTGGTT	ref_3966_fdr	89	187	127	110	163	85	185	84	238	79
CCCGAGGATCGTCTGT	ref_3966_fdr	19	19	25	15	17	18	23	11	26	14
GCGACCCGGCCGATCA	ref_3966_fdr	25	31	35	24	50	26	50	33	33	24
ATTAAAATAGGACGAC	ref_3966_fdr	14	20	24	18	17	14	16	10	12	12
GAGAAGGTGTTTCACA	ref_3966_fdr	8	10	15	5	9	6	11	13	8	10
TTTGATGTATATGCAC	ref_3966_fdr	4	10	12	9	13	4	14	8	13	1
TCAGTCCCACCCATTG	ref_3966_fdr	1	0	0	0	1	0	0	0	0	0
TGCCAAATACTCGCAA	alt_3966_fdr	21	27	23	22	23	19	20	12	28	8
TCACAACCCTTAGCTT	ref_3966_fdr	18	25	20	16	18	13	18	10	21	7
GTCCATTTCTGATTCC	ref_3966_fdr	39	37	49	29	36	28	34	30	38	44
CTTCACGTCCTATAAG	ref_3966_fdr	42	56	42	37	45	38	54	51	70	38
CCGGTGTGATCACTCT	ref_3966_fdr	40	37	35	31	43	25	49	18	33	33
TGTTGCATGGTTCGCC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCTACAGCCTTGC	ref_3966_fdr	24	29	26	22	26	12	34	20	38	19
AGATGTCTCTTCGGGT	ref_3966_fdr	125	140	127	139	151	136	121	127	173	134
CTTAATACGCCCAAAG	ref_3966_fdr	135	164	164	142	169	122	153	142	170	127
TGATGGCACTAAATCC	ref_3966_fdr	16	23	14	5	14	13	18	11	24	10
TATGCCAACCGGTTTT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGTTGGGGGAGTCGAA	ref_3966_fdr	4	6	4	0	5	4	5	4	2	1
AACTTGTCTATCCGTG	ref_3966_fdr	8	10	11	5	14	15	4	5	14	9
ATTAACTCTTATACCC	ref_3966_fdr	79	61	97	62	82	76	82	71	77	63
GGTGTTCGTGTTGTTG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGTACCGTGGGCAATC	ref_3966_fdr	14	16	12	17	14	11	17	19	19	12
TGTATTAGGCCTGGCT	ref_3966_fdr	11	15	15	18	16	14	22	5	20	11
GTTGATGTGTGGTTGG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CACGTCGGATATCCCA	ref_3966_fdr	7	9	3	4	11	2	6	5	6	1
TTACGACTCCTGTAAG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGCCACTTATGAACGT	ref_3966_fdr	4	15	5	10	13	2	7	3	18	7
TAGTGCTCGATACGTG	ref_3966_fdr	7	15	7	11	11	4	14	6	9	6
GCCGCGGATTTGCCTT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGTTCATATTACC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GGTTGTGTGACTCAAG	ref_3966_fdr	13	17	12	13	15	12	16	11	18	11
AACGCCGAATTGTGTG	ref_3966_fdr	35	33	36	50	38	30	49	23	26	28
TGCACCACATGTCACG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGTATTAACACACTTT	ref_3966_fdr	33	29	43	29	36	33	18	25	44	20
GTTCAGTGCTACCTCG	ref_3966_fdr	6	27	22	20	34	17	11	12	22	23
CCTACAAAGATTGTCT	ref_3966_fdr	5	11	5	8	16	9	5	10	12	2
CGCGGCGTTGGGTCTT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTGTAGAATAGTT	ref_3966_fdr	32	24	49	44	29	24	52	24	48	35
GGTCGGAAAAGTCATA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GATCCGCTCTAGTATT	ref_3966_fdr	0	2	0	1	2	1	1	1	2	4
TGAAGGCTATGCGTAG	ref_3966_fdr	24	44	44	27	54	38	43	35	33	34
CTTGTGGCGCCTGATT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTTTTGGGGTGCT	ref_3966_fdr	9	20	11	7	13	15	18	14	19	3
GTGTTTAGTCAAAAGC	ref_3966_fdr	33	32	40	37	45	33	34	24	46	24
CAAGCCATCCGAAGCC	ref_3966_fdr	4	25	13	6	22	8	19	4	28	6
ACTGGTGGGTGCCTGT	ref_3966_fdr	1	5	2	1	4	1	10	2	5	5
CCAATCCACTTCCCCC	ref_3966_fdr	3	4	3	9	11	3	8	4	8	2
ACGTTTTCTACGTTAG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TTCATCTTCAGTGTGT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTATTGAACTGAG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAACTTTTATGCA	ref_3966_fdr	7	24	12	13	39	13	17	20	15	7
TCAGCCCCACCCATTG	ref_3966_fdr	0	0	0	0	0	0	1	0	0	0
CGGCTATCCCCTTCCA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTGAGGGGATACT	ref_3966_fdr	15	15	18	15	14	14	8	7	11	8
GTCGGGAGGTTGATTG	ref_3966_fdr	92	138	103	69	126	85	147	63	139	72
TCGGTGCACTAATAGA	ref_3966_fdr	5	3	8	7	6	3	1	6	9	3
CTCTTAACCCAGCAAG	ref_3966_fdr	16	20	11	9	45	23	37	15	35	12
GTGTAGAGCCTGGGCA	ref_3966_fdr	8	12	3	8	11	7	10	8	1	7
CGCCTTTTTTTGGTTA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
GTACTGACGGTGGATT	ref_3966_fdr	28	36	24	33	37	23	38	18	53	26
GGCTCGCGCCTCTTAA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTTATAAGCTGT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CACTTGAATCACGCCC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTTCAAATTTAAC	ref_3966_fdr	37	28	36	31	34	27	32	39	42	21
TAGGACGTAGCTCAAC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTTTTTTTTTGGT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGTGAGGAAATTTGTA	ref_3966_fdr	20	14	20	13	12	11	9	14	15	6
TATATGCCCGATCTTC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CAAGAGTCATCTTACC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
AGACCCGTATCGCTAT	ref_3966_fdr	17	22	19	22	31	18	19	20	16	10
TGTTGCTCCCTACTGG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
ATACATTTCGCCGGGT	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CCAATAGTTTCACAGC	ref_3966_fdr	27	37	28	29	28	30	48	30	37	23
CGGCGGACCCAAATGT	ref_3966_fdr	9	7	9	6	11	11	4	9	7	8
ATTGGGATCCGCGACT	ref_3966_fdr	20	17	24	13	11	6	17	16	6	11
ATGACTATACGTCATC	ref_3966_fdr	21	22	21	19	19	20	31	20	26	18
ACTCAAGAGGTGAAAT	ref_3966_fdr	9	11	15	10	16	6	18	8	12	13
CCGGAAGTGCTGCCGG	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGGATCCGGTATCCCA	ref_3966_fdr	6	13	5	2	13	5	8	4	4	11
TTCAGGTTCCGTACGA	ref_3966_fdr	25	48	48	25	36	23	56	32	52	38
ATATGATTCAGTTCAA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGGTTGTCTACAG	ref_3966_fdr	46	60	39	53	70	44	66	30	53	45
GTCACCCTCAATGTGT	ref_3966_fdr	5	17	6	4	9	2	12	10	14	2
ACACGATGTGGTTAAC	ref_3966_fdr	3	5	9	5	9	2	4	0	6	5
GTAGGGCCATTACAAA	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTCAGCAGTGGTC	ref_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATATGCTCGAGG	ref_3966_fdr	9	17	11	12	14	10	14	13	16	8
ACTATTCTATAGCAGT	ref_3966_fdr	14	10	7	4	3	12	10	5	5	8
GGGTCCTGGGAGGGCT	ref_3966_fdr	3	3	0	3	0	0	4	2	1	1
CACCGATTAACTGTCC	ref_3966_fdr	4	10	0	5	12	2	8	0	3	2
GGAATCCGACCCGAAG	ref_3966_fdr	29	32	26	25	34	25	37	25	32	24
GAGTCCAAGTGTCCTC	ref_3966_fdr	46	62	56	42	70	40	39	47	57	54
TAGCTGCGGCATCCCC	alt_125_missing	0	0	0	0	0	0	0	0	0	0
AGTAAATCGTTTGGGG	alt_125_missing	50	31	64	55	38	49	28	36	42	51
TGCTCGGGAATGGCTG	alt_125_missing	8	8	12	8	3	16	9	12	2	4
GGCGATAAACCCAGGA	alt_125_missing	277	159	335	232	141	239	175	211	175	218
GAGCAGCTTATTTGGC	alt_125_missing	0	0	0	0	0	0	0	0	0	0
TTCGGGACCTGCCACC	alt_125_missing	53	27	51	47	28	46	28	36	31	32
TTCCAGCTTTACGGAA	alt_125_missing	3	5	9	6	9	3	8	5	6	2
TCTGTTTTGATCGTCA	alt_125_missing	0	3	2	2	2	0	7	2	2	4
GTACTCGAAGATTTAC	alt_125_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTATGCATGAGT	alt_125_missing	0	0	0	0	0	0	0	0	0	0
CACCCTGGTTTTTTAT	alt_125_missing	0	2	1	1	1	1	2	2	0	0
CACACGGATAAATTGC	alt_125_missing	11	14	13	10	7	19	12	14	13	3
ATGCATGGTTTCTAAG	alt_125_missing	29	25	45	24	27	29	31	25	14	27
CAGTACTCATGCTCGG	alt_125_missing	0	3	4	1	0	2	3	2	1	3
AGAGAAGGTCGTGGTA	alt_125_missing	2	0	3	1	0	2	0	0	0	1
ATGATTGTACGGACGT	alt_125_missing	122	69	118	106	60	86	76	106	52	86
GACGTTAGAAGCTTGC	alt_125_missing	173	110	183	177	95	148	120	154	116	128
CACTGCTAACTTGAGT	alt_125_missing	43	23	40	29	25	22	22	18	25	27
AGTTATAAAAACAGCA	alt_125_missing	72	55	98	105	47	82	54	85	66	72
GACCAAAAATCTTGCG	alt_125_missing	77	39	75	82	50	72	43	66	36	59
TTTGGTTTCAACAGAT	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
CCCGACGGCTAGGTTT	ref_2515_RC	4	2	5	7	4	1	3	3	2	2
CCTGTTCTGCCTCGAC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
CTTACGCATTCCGGTC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
CGGGGTTTCTGGTCCA	ref_2515_RC	11	24	14	10	28	8	26	10	29	5
GTTAGACATGACACAT	ref_2515_RC	64	92	87	65	78	68	83	61	86	65
ATGGTTAATCCAGCAC	ref_2515_RC	31	47	26	28	52	42	43	27	63	32
CGAGAAGGTCCTTAGA	ref_2515_RC	23	31	20	24	28	17	39	21	31	27
ATCTGCGTTAGCTAGG	ref_2515_RC	19	33	30	22	31	16	38	19	20	15
TCTGGTCCTCGTGCTT	ref_2515_RC	4	2	5	2	5	4	3	3	2	2
TTACCTAGAGTATGAC	ref_2515_RC	21	29	43	27	31	15	38	20	41	13
AAAGCATATGGCCGCG	ref_2515_RC	28	27	48	24	32	26	34	33	27	21
CTTACAGACCAATTCG	ref_2515_RC	25	32	13	14	23	19	26	17	29	15
TCTAATCATCTAATGG	ref_2515_RC	2	4	2	2	3	3	4	0	1	3
ATGCCCCTTGGGCCCG	ref_2515_RC	51	79	51	51	56	34	74	40	70	47
AACTCTCACTCTTTTT	ref_2515_RC	28	23	37	28	34	26	27	16	38	29
CGCAGTTTGTCTCTAC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCTGCATCAAAC	ref_2515_RC	6	10	8	8	11	8	12	11	17	6
CCTTCTGTCCTTGAGA	ref_2515_RC	118	150	103	97	178	98	151	92	181	102
ACGGTCTCATGCACCC	ref_2515_RC	47	70	58	49	72	34	75	39	66	50
AAGTCAGCCCTAATCT	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
CTTATTTTGTGTGACT	ref_2515_RC	14	29	24	28	35	26	51	21	46	17
CACACGCCACTTGACG	ref_2515_RC	1	5	4	4	5	9	7	3	5	6
GCCCCTACAAAGATCC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
ACACACGGTGCACCGC	ref_2515_RC	18	33	21	10	23	12	32	13	26	12
TTCCATGGTCAGGCGG	ref_2515_RC	20	63	33	27	45	26	63	20	52	24
AGCACAACCGTTACCC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
GGTCATCGTACTCTTC	ref_2515_RC	6	8	11	11	9	8	11	6	8	8
GGCAGATTTTTGATGC	ref_2515_RC	44	54	48	30	55	35	52	21	59	25
GCGATCGTTAGCTCCG	ref_2515_RC	50	103	117	61	91	76	103	63	97	67
TCTTACCTCTGCGTTT	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
ATCGTCCCGCCCGGGA	ref_2515_RC	9	28	12	11	11	9	14	10	15	9
CGCGGTCCGCATTTGC	ref_2515_RC	4	2	4	2	1	3	6	3	6	1
CTTAGTTAATCCGTTT	ref_2515_RC	3	5	12	4	13	2	5	4	6	6
CACACTCTTATTAGCA	ref_2515_RC	10	25	6	3	18	6	27	4	23	5
ATTGGTCCGATGGATA	ref_2515_RC	15	15	15	15	17	5	18	9	20	2
GAGCGCAGCTATTCAC	ref_2515_RC	101	126	129	104	148	89	157	87	159	103
AACTGTGCCGGTACCC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
GTCGGTATGCGTCTTA	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
GTTTTTCTTCATGCTC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
CTCGAACTACGTAAAG	ref_2515_RC	0	2	2	1	2	0	1	0	5	1
TTATTGCTACGATTTA	ref_2515_RC	99	163	120	119	140	116	138	83	154	85
TAATCTTTTTCCGGGC	ref_2515_RC	0	0	0	0	0	0	0	0	0	0
GCATAGTATCTCTCGG	ref_2515_RC	0	1	0	0	0	0	0	0	1	0
CTTATACCTTTAGTAC	ref_1834_reverse	11	21	19	8	11	18	7	19	10	9
CTCCCCGCGTTAATAT	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TGGATCAAATCCCCCC	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TACAGTGTTCAATCGT	ref_1834_reverse	40	47	63	38	29	45	37	33	46	34
CCTCAAAATCTGGAAG	ref_1834_reverse	24	26	30	26	24	20	16	28	28	13
TGTTAAGCTATCAAAG	ref_1834_reverse	30	28	57	43	35	35	33	24	31	29
AGAGTAGAGCACACGG	ref_1834_reverse	24	13	14	19	17	22	22	23	34	27
ATTGCCCGAGTGGAGT	ref_1834_reverse	81	68	88	83	63	78	80	79	84	88
GTGACTGTCAAAGCCC	ref_1834_reverse	8	13	4	12	16	12	14	11	16	13
AAAGCCGCGTCGGCGC	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTTACTCGGCCA	ref_1834_reverse	45	31	74	44	42	40	46	48	45	46
GCATAATAATACCGCG	ref_1834_reverse	12	11	10	7	12	9	11	21	7	12
CGTATGAGGAATGTTC	ref_1834_reverse	40	34	41	41	38	39	33	33	36	36
CGATAGGAGTTCATCT	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCCAACTTAGGCC	ref_1834_reverse	12	17	20	14	17	14	18	21	18	17
TGCGTACTCGTAGGTA	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
CACTACTTGGCATAGC	ref_1834_reverse	36	21	39	31	33	30	39	29	29	32
TGCATTTTGGCCGATT	ref_1834_reverse	71	44	74	57	60	56	63	50	71	50
CTGGGGGCGATACGTT	ref_1834_reverse	4	5	5	10	11	14	8	9	11	10
GATCCAGCAAAACGTT	ref_1834_reverse	30	33	35	37	39	39	45	40	33	36
TTCGCGTGTATCCTCT	ref_1834_reverse	12	7	10	12	12	2	5	14	13	5
CTAGTGCTGGATCTGC	ref_1834_reverse	2	11	7	3	4	6	5	11	9	9
TAATCCGCATCGTGTT	ref_1834_reverse	94	89	111	79	90	71	94	92	101	83
CTTCTATATCCAGCGT	ref_1834_reverse	66	129	105	109	128	90	151	77	133	86
TCTTCCTCTCGTAAGC	ref_1834_reverse	45	53	66	39	50	49	60	35	47	53
TTACATCCCGCATCAA	ref_1834_reverse	11	3	13	8	5	3	6	7	3	9
TAGCGTTTTTGCGGGC	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTCGTTCCCTACT	ref_1834_reverse	24	17	19	17	18	24	16	21	18	18
GGCTTGTCTAGTATCT	ref_1834_reverse	36	21	45	40	32	23	11	27	29	37
TACAGAGCCCGGTCGT	ref_1834_reverse	26	34	26	42	25	32	32	26	30	24
CCTTGTCATCCGGCGC	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
CCCACCCATGAAGCTG	ref_1834_reverse	26	34	45	31	34	15	17	22	28	23
CCTAGACGCTCTTCGT	ref_1834_reverse	14	52	20	21	48	14	39	14	38	17
CATGTCCCCATTGACA	ref_1834_reverse	20	36	33	25	29	33	30	21	29	26
ACGGTATTCTACCCTC	ref_1834_reverse	10	17	20	21	21	15	26	25	22	16
CCCCCTCTTATATATT	ref_1834_reverse	14	23	25	15	37	18	44	15	32	12
ATGTGGTCTCTCGTCT	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TATAGTTTTTTCATTT	ref_1834_reverse	13	8	10	5	10	21	11	11	10	9
CAGCTTGCATAGCCCA	ref_1834_reverse	168	209	263	184	226	184	212	214	252	175
TTTTCGTTTGTTTGCG	ref_1834_reverse	24	11	17	11	17	14	12	9	17	13
AGTGGCAGGTCGACGC	ref_1834_reverse	189	140	246	186	163	178	181	195	162	196
GCACAATCAGGCGCTA	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTGGACATACCCG	ref_1834_reverse	0	1	3	1	1	1	0	5	2	3
ATTCTTGTATGTGCGC	ref_1834_reverse	40	33	35	27	37	28	41	23	44	33
GTAAGTCACCCATTAC	ref_1834_reverse	9	17	17	13	9	9	10	15	9	15
AATGAGGTTACTCAGC	ref_1834_reverse	2	3	1	3	7	1	8	4	3	3
CTGGTCGTCTCGTACC	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TGTATGCATTACCTCC	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTACACTACATCT	ref_1834_reverse	42	53	53	33	36	40	48	29	52	35
ATTTTTCTTCCTGGTC	ref_1834_reverse	40	22	31	21	20	24	21	34	36	25
TCCGTCTGCTACCGTA	ref_1834_reverse	14	17	27	22	18	19	17	18	20	14
TGTGGCTATCATTACT	ref_1834_reverse	23	25	27	30	36	27	32	30	28	27
TTAAGTATTGAACAGG	ref_1834_reverse	14	22	22	17	14	18	12	14	17	19
CTTTCCGCCAGGTTTT	ref_1834_reverse	30	28	37	28	13	12	19	21	30	27
TTCTATTAATTGACCG	ref_1834_reverse	68	57	64	55	52	53	56	41	73	50
TTTTTTCCCATCTTCG	ref_1834_reverse	33	24	43	41	24	32	36	22	31	33
GTAGTAGATTGCTTTG	ref_1834_reverse	33	29	44	35	27	32	31	34	29	27
GATGCGTTGATCTTCG	ref_1834_reverse	10	2	2	3	2	0	2	3	6	0
CATTGATATTCACTAA	ref_1834_reverse	9	14	35	17	17	18	26	28	19	25
TCCTTTTGCTTAGAGT	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
CGGCATCTAGCCAATC	ref_1834_reverse	113	102	125	106	99	109	103	82	95	93
CTCATTTGTAGAGGTC	ref_1834_reverse	25	39	24	24	30	31	26	23	35	12
AGCGCCTCTGTTTCTA	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTAAAAACCTGAG	ref_1834_reverse	53	51	61	62	36	62	42	49	54	43
GCCAGCTTGAGGCCAG	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTGCGAATCAGCC	ref_1834_reverse	178	169	207	174	174	142	196	169	183	130
CGTTACCGGCTTGAGG	ref_1834_reverse	2	1	2	4	1	0	4	6	1	1
TCACTAACCCTGTTGT	ref_1834_reverse	7	12	16	14	15	11	18	9	9	4
GCGTTAGCTAGGTCTA	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGGAGTTGCTTAA	ref_1834_reverse	28	36	33	26	44	36	44	30	37	42
ATGTTGGGTGGTCATG	ref_1834_reverse	244	205	273	233	216	206	201	220	218	178
AATGGCCGCAAAACGT	ref_1834_reverse	15	15	23	12	13	15	13	17	18	17
CTCATCTTTCATCCGG	alt_1834_reverse	174	146	224	184	123	217	131	171	153	174
TTCGCGCTCGCGCGTC	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
ACATTTTAAAGAGGTC	ref_1834_reverse	6	8	22	18	10	8	10	7	9	16
GCCCCTGGTAGGCCTT	ref_1834_reverse	83	73	102	103	88	109	83	110	86	105
GTCGCCTTTTTGCTAT	ref_1834_reverse	26	40	36	40	30	42	34	29	29	30
GTGTCTCAGTTCTTTG	ref_1834_reverse	24	35	17	13	28	22	17	17	25	22
GATTCTCGTAGTTCTT	ref_1834_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCTTTTCTATTTC	ref_1834_reverse	62	63	81	82	76	64	77	66	80	66
GTTAATCGAACCCTGC	ref_1834_reverse	61	39	51	58	36	46	57	57	51	41
CCAACGCTTGGTACCT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
ATATGATGTGATAAGG	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
CATTAAAGGTCGTGCA	alt_3539_missing	34	39	34	21	38	27	47	18	42	16
TAATGGATCCGGATTG	alt_3539_missing	2	3	2	7	5	4	4	2	3	3
CCTGTTGCGGGTATAG	alt_3539_missing	22	35	25	19	37	19	52	13	36	25
ATACTAGCAGGGCCTA	alt_3539_missing	3	4	3	4	4	0	3	7	3	3
GTTTAAGCGTTACGGT	alt_3539_missing	2	2	7	5	2	0	3	3	8	2
GTAAAAAATACAATGT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
GTTTATTTCTTTAGTG	alt_3539_missing	138	133	206	163	107	165	132	137	113	124
TCGTGCTGGCCCTGGT	alt_3539_missing	55	53	55	46	53	45	54	38	61	30
ATGTGTTCACTGTTAG	alt_3539_missing	22	29	21	37	39	21	60	19	37	16
AGGGCCTTATCGCTCT	alt_3539_missing	31	47	32	38	39	24	56	30	46	33
AACGCTTCTTACTCAA	alt_3539_missing	2	2	2	5	3	1	1	1	1	0
CGCTAAAAATCGATAT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
TATCTTTCTCAACCTC	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
GATCCCTGCCTATTAT	alt_3539_missing	8	0	5	1	7	7	2	7	4	4
ATTCGGCCTTTCCAAC	alt_3539_missing	5	7	8	3	10	8	10	8	14	8
CCGTAGTACCCCATTT	alt_3539_missing	12	21	21	17	25	15	22	17	27	10
ACAACCTATTCTCTTG	alt_3539_missing	13	28	28	14	27	19	22	15	24	13
CCTCTATATGGATGCC	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
CAGCTTTGTGTAAATA	alt_3539_missing	3	4	2	7	8	1	4	5	3	2
TTAAAGTATCTGTTTT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
CCGACGGCAATTAGTC	alt_3539_missing	3	6	3	2	14	4	10	2	10	3
GGTTTTCCCCAAGCCA	alt_3539_missing	12	20	21	10	18	15	31	13	32	18
GGTAGTGTGAAGTTAT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
GTTTGACATGCGTTTG	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
CAGGACGCAATTGTTC	alt_3539_missing	3	14	5	3	13	3	8	10	18	7
TATTCTTTTTTTCAGG	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
TCGCTTCGGGGTCACT	alt_3539_missing	1	2	0	1	2	0	0	0	3	0
TCCATCCGTCATGGTT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
GGCTCCCATTCTCGTT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
TCGTCCCACAGTACCT	alt_3539_missing	1	12	1	1	4	2	6	4	6	10
GAACCTTGGTTATTAA	alt_3539_missing	30	58	62	48	65	41	60	42	73	31
GGCTCCCGTTCTCGTT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
TACTTGTCGCTTATGT	alt_3539_missing	71	107	69	80	89	79	121	46	116	83
ATCTTTTTGTTATTGA	alt_3539_missing	81	106	90	68	112	72	119	59	127	74
ATTCCAGTCCCCGTTT	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
CGTTATGTTAGGACAA	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
ATGGAGGATGTTTAAA	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
GTAAATTCTATTCTTG	alt_3539_missing	9	5	6	6	13	3	2	2	11	3
TGGTGTGAATATTTAC	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
TTTCGTATATTTCCGA	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
AAATTTTTGCTCCATA	alt_3539_missing	0	0	0	0	0	0	0	0	0	0
ATGATGGCATGTTTGG	alt_3539_missing	5	7	5	8	8	3	10	10	7	6
GGTATGTATCGAGACA	alt_3539_missing	8	17	13	9	15	5	10	6	6	8
CTATGCTCGCGTTTCC	alt_3539_missing	25	49	36	24	48	24	52	20	66	15
ATGACTGGGCTCGTGC	alt_3539_missing	6	19	9	4	7	11	14	13	23	8
GGGCTGTTCAGCTGCC	alt_3539_missing	14	12	13	10	21	15	13	11	25	10
CGGCTCATTGTGTTTG	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
GGTATTCAGATCCTTG	alt_3332_reverse	2	8	4	5	4	1	7	0	3	4
TGCAGTGGGTAGCTGT	alt_3332_reverse	9	12	15	5	18	10	14	12	17	15
CCTACTTCGTACAGTC	alt_3332_reverse	68	79	61	72	82	45	82	48	82	31
CGATCAAGCGCGGCGG	alt_3332_reverse	0	9	8	6	10	6	14	5	13	4
GGTGGTCTGTTTGCAA	alt_3332_reverse	16	19	24	19	28	14	23	12	23	10
ATCTGTTGCCGCCGGC	alt_3332_reverse	8	9	5	9	7	11	12	6	9	4
GAGATTCATATCAATT	alt_3332_reverse	22	21	23	14	17	15	16	18	32	3
CGCTTAATTCTCATAT	alt_3332_reverse	15	26	16	18	19	9	27	18	29	16
ACGCTGTCCTAGAATT	alt_3332_reverse	45	60	69	63	54	53	64	36	77	42
TGCGGAGGTACGTCAT	alt_3332_reverse	31	36	37	57	33	34	29	23	40	28
TCTTGCTTTGTGTGCG	alt_3332_reverse	1	3	0	1	1	3	3	0	4	2
GATATCCGTCTGGCTC	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
CGCAACCACGTCAATT	alt_3332_reverse	12	36	19	10	27	17	37	20	28	24
ATATTCGAGGGATATG	alt_3332_reverse	26	55	34	36	44	19	51	22	48	36
TCGTAGTGAAATGCAA	alt_3332_reverse	9	6	13	5	5	4	7	5	6	5
CTAGGGGCCCATATGG	alt_3332_reverse	16	49	25	31	37	22	46	18	48	17
ACATCTTTGATGGTTT	alt_3332_reverse	34	29	33	23	45	23	33	33	33	35
CTTAGCTCTGTCCTTA	alt_3332_reverse	74	106	82	74	92	68	110	60	121	52
CTGTTCTTTTCGCAGT	alt_3332_reverse	7	3	2	4	1	4	2	2	4	0
ATACATTCCTCCTACT	alt_3332_reverse	40	67	50	50	73	48	58	26	48	48
GGACGTTCCATGGCGC	alt_3332_reverse	6	8	5	5	2	3	5	3	4	3
TCGTACTATGAAACAA	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
ACCCACTCTGAGGTCC	alt_3332_reverse	8	11	10	4	7	5	13	5	11	3
GTTGTATATCTATCTC	alt_3332_reverse	9	23	12	7	23	9	17	11	14	13
GTGCTAATAGCTACGT	alt_3332_reverse	29	38	39	24	50	35	42	21	34	32
AGGCCAATAGTCCGGT	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
ATCATCAGAGTGCTGC	alt_3332_reverse	0	0	0	0	3	1	2	2	0	1
TTTGTTCTACTCGTCG	alt_3332_reverse	5	9	6	8	12	4	14	9	3	4
CCATTTTTACCGCAGC	ref_3332_reverse	23	41	21	26	30	22	24	27	32	25
TACTATTGAATGCGTC	alt_3332_reverse	12	12	20	7	11	4	8	14	9	5
ACTATTACATGGACCT	alt_3332_reverse	25	29	28	26	33	25	22	22	25	30
ATGCAAAGTGCCAGTT	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
ACGGAGGCGGCCTACG	alt_3332_reverse	297	369	359	338	415	278	346	285	391	283
CAGCGCACCTCGATCC	alt_3332_reverse	1	11	3	1	7	2	6	0	5	3
GAGTATCAATGAGCCA	alt_3332_reverse	49	69	56	56	71	51	87	52	78	53
CAGCCCGGAAGAGACA	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
CTATGGAGTGACTCGC	alt_3332_reverse	1	7	4	5	5	4	3	7	8	0
GGGAGCATCAGTGTAT	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
CCGAAGGCTAGTCCGG	alt_3332_reverse	13	24	28	13	18	16	19	16	47	9
GCCCATGGAGTTCTAA	alt_3332_reverse	38	116	73	55	111	44	114	51	109	60
TAAGACTTCTTTCGTA	alt_3332_reverse	3	6	10	3	5	4	3	5	9	3
AGTGAGTTAGCGGGCA	alt_3332_reverse	31	32	29	25	33	25	32	22	28	22
TTGCATCATTGAGTAA	alt_3332_reverse	2	3	2	3	3	0	2	0	3	0
ACGATGGCGCTGATGG	alt_3332_reverse	67	50	65	38	48	51	54	53	44	43
CCGTGTAGGTCCGTCG	alt_3332_reverse	26	33	34	31	44	37	31	22	41	26
TAAGATTCGTAGAGGG	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
AGAAATCGTAGCCAGC	alt_3332_reverse	1	4	4	0	0	2	4	1	3	2
CCTGGTAGAAGAGCGC	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
TGTCAATCAGTAGCCG	alt_3332_reverse	10	6	6	2	14	4	16	7	5	7
CGTTGACGTACGCCAC	alt_3332_reverse	10	20	20	11	24	12	24	18	22	13
TAACAACGCCACGACA	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCTATTTGGTCAG	alt_3332_reverse	20	29	20	18	21	8	13	10	36	19
GTTCTCGTGGAGTTCT	ref_3332_reverse	207	264	249	198	228	197	282	221	262	203
TGTATCCCTACCGTAT	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGCCATAGCGCCG	alt_3332_reverse	38	47	35	37	45	22	51	30	58	29
TGACGTTGATTCTCTT	alt_3332_reverse	21	32	29	27	27	16	22	17	30	22
TTCGTCCGCAACCAAT	alt_3332_reverse	10	42	18	14	36	16	42	18	37	9
TGGTTTATTAGCTGGA	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGTTCTCTACCTA	alt_3332_reverse	11	20	21	18	15	19	23	16	19	17
CTATGGTTTCTTTACG	alt_3332_reverse	23	29	24	28	41	26	37	18	37	28
CCGCTCACAGCGTTAT	alt_3332_reverse	21	25	19	16	20	13	22	11	22	21
CAGATGCCAGCGGCCA	alt_3332_reverse	1	3	3	6	10	11	10	5	9	7
CCGCATATCTATGTTC	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
ACAGGGGCCAAACCAT	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCTTTGCGGTCGC	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTTCTAATTGAAG	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
GTCTATGCCTCTTTTG	alt_3332_reverse	10	14	11	8	14	8	5	11	3	8
TAGTTAGGGAGGTCTG	alt_3332_reverse	75	79	79	82	95	72	101	68	100	64
TCATTGCTTAATTGCG	alt_3332_reverse	11	19	12	6	13	5	13	4	16	9
CTCAGGGTAGTGATGA	alt_3332_reverse	13	20	10	16	10	6	16	9	9	8
CTAACCTAACACGTAA	alt_3332_reverse	24	26	32	24	27	21	36	23	41	20
GTCGTAAAATACTCGT	alt_3332_reverse	24	23	27	22	33	20	34	24	29	20
CCCCGGCCACGGGATG	alt_3332_reverse	3	11	0	1	5	0	1	1	4	3
CCTTCTCTGTTCGCTT	alt_3332_reverse	31	45	40	35	52	31	46	43	37	31
CTTATTAAGGCGTTAG	alt_3332_reverse	115	146	132	122	156	111	160	115	188	83
AGGACTAGGAAGTCGG	alt_3332_reverse	135	223	166	154	187	132	211	149	237	133
GGTGGGTTTCAGTAAA	alt_3332_reverse	47	53	52	48	43	49	58	37	56	36
CTTTAGCCGTTGGCTG	alt_3332_reverse	6	9	3	2	9	4	7	5	9	2
TGGGAACAGGCGGGAC	alt_3332_reverse	12	20	14	17	17	13	20	16	15	14
AGGTAGTAACACGTTC	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
GGATTTGTTCTGATTG	alt_3332_reverse	60	62	44	44	82	30	89	49	88	40
AGCGCCTCTTTAATAG	alt_3332_reverse	28	36	30	32	38	28	49	27	37	26
GCAAGGAAATGGTGCT	alt_3332_reverse	95	143	120	109	110	97	114	94	100	87
TCCGCTTCGATAATTG	alt_3332_reverse	15	24	19	10	15	12	24	10	17	9
TTCCTTATATAGGTTA	alt_3332_reverse	3	5	3	2	1	2	7	7	7	1
GACGAGGATGCTTGCG	alt_3332_reverse	29	36	32	29	41	28	37	27	30	25
AGACTGTTCTATCGAG	alt_3332_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCTAGGTTACCAT	alt_6094_new	36	46	44	43	64	40	42	44	45	29
GCCGATTCCTCATTGA	alt_6094_new	31	33	43	50	38	40	45	51	37	38
GACTAATTTTAAACCC	alt_6094_new	18	9	22	13	11	19	11	13	12	12
ATCCCGTGTTGTTCTC	alt_6094_new	12	33	40	30	34	32	33	11	37	18
TTAAGCTTTCTTCCGG	alt_6094_new	44	36	55	52	45	47	33	40	37	41
CCTAAGATATCACAAT	alt_6094_new	0	0	0	0	0	0	0	0	0	0
CTATTTCATATTACAA	alt_6094_new	10	11	19	7	12	12	5	15	13	9
GTGCAATTCTCTCCCG	alt_6094_new	0	0	0	0	0	0	0	0	0	0
TATCACATTTTTCAAA	alt_6094_new	26	23	20	16	13	16	27	25	23	23
AAACACAGAAAGCACT	alt_6094_new	12	8	12	9	13	5	7	10	7	9
TAATACAGGAAGTTTA	alt_6094_new	68	82	111	71	69	93	81	97	93	73
CATCCAGATCGTATTG	alt_6094_new	43	45	52	47	45	37	49	42	56	37
ACATGCTTATGGCGTC	alt_6094_new	0	0	0	0	0	0	0	0	0	0
GGGTTGATGTTGTGCT	alt_6094_new	0	0	0	0	0	0	0	0	0	0
AAATAGTCAGTCTTAA	alt_6094_new	124	151	148	104	131	136	140	128	149	124
CAATTCTACTGTTAGT	alt_6094_new	37	37	46	33	47	36	58	35	48	31
GGTCAGATGCCATAAG	alt_6094_new	20	34	30	13	30	41	34	22	31	30
ATTTAAGGTGGATTAT	alt_6094_new	0	0	0	0	0	0	0	0	0	0
CGCCATCAGGGTTTTT	alt_6094_new	19	47	59	37	41	37	63	35	54	34
TGATTCAGATGAATGG	alt_6094_new	0	0	0	0	0	0	0	0	0	0
CTTCGTGTCGACTTCG	alt_6094_new	6	10	13	5	7	7	11	3	4	4
GAATGCAATTTCTTGA	alt_6094_new	12	12	8	17	13	19	15	6	9	10
CCGAGGAGTTTCCCTT	alt_6094_new	103	66	96	102	61	80	62	69	62	70
CTTCCGACTAGAATGC	alt_6094_new	81	117	126	98	100	81	115	90	86	78
TACTTTCTGTTCGAGA	alt_6094_new	37	36	61	43	40	59	45	29	54	49
TCTAATTCGCCTTGTG	alt_6094_new	8	15	20	17	10	7	10	15	8	14
GGAAGCCTCGAGCGCG	alt_6094_new	141	100	153	131	132	138	110	115	112	106
GGCAAATCCAACCTGC	alt_6094_new	48	42	60	41	45	41	43	38	43	21
TTGATTGATGCTGCAA	alt_6094_new	5	2	10	7	4	8	1	7	7	6
GGCGGGCTCGAGTTTC	alt_6094_new	27	25	31	19	30	28	18	19	28	26
CGGGAAAAGCTTTGCT	alt_6094_new	0	0	0	0	0	0	0	0	0	0
GAACTAGCGTCCGGTC	alt_6094_new	33	40	44	39	40	34	46	30	48	32
CTTTCGTTAGTACGCG	alt_6094_new	46	59	66	44	64	59	65	43	60	52
TGCATGCTCACGGTAC	alt_6094_new	24	25	29	18	23	23	16	21	27	14
CTGTTCCAAAGGATTA	alt_6094_new	0	0	0	0	0	0	0	0	0	0
GTGCGTCTATAAAGCT	alt_6094_new	0	0	0	0	0	0	0	0	0	0
AAGCGTATCCGAAGTC	alt_6094_new	54	67	74	73	57	61	69	36	72	52
CCTAGACTTATATCAA	alt_6094_new	0	0	0	0	0	0	0	0	0	0
TTACATGTCGATATCA	alt_6094_new	15	12	14	18	13	21	17	19	15	18
CCGCACGGTCGAAATC	alt_6094_new	5	12	13	14	31	4	18	11	24	7
TGTTAGATTTTTTGTT	alt_6094_new	41	35	47	38	43	46	50	38	37	37
CCTCAGTTCGTTTTTA	alt_6094_new	114	126	137	121	123	80	119	95	142	88
ATTACGCCAGTGCCGT	alt_6094_new	33	20	45	31	35	36	37	33	26	36
GAATAGGGGTTGTTTT	alt_6094_new	31	29	33	25	12	19	25	24	27	26
TTCCCACAAGAGTTGT	alt_6094_new	52	65	74	64	57	46	69	57	57	55
ATCCAGGGTAATTCCG	alt_6094_new	104	73	102	84	101	95	101	73	104	87
TTCGACATCGGTTGAA	alt_6094_new	8	8	10	9	14	9	7	4	6	8
CTAGGCTAGGATGGGG	alt_6094_new	0	0	0	0	0	0	0	0	0	0
TCCTTGTTATATTTTT	alt_6094_new	53	51	62	59	36	44	37	38	44	34
GTCAGAACCGCTGTCT	alt_6094_new	29	32	40	23	40	34	37	35	57	25
TCCGTTCGCATGTATT	alt_6094_new	0	0	0	0	0	0	0	0	0	0
CAATAGTCTGCGCCCC	alt_6094_new	19	22	32	9	22	18	32	20	27	21
CCTGACGTCAGTTCGC	alt_6094_new	149	133	175	193	163	160	160	148	156	143
ACGTTTATAGAGTCAG	alt_6094_new	19	16	30	15	19	18	38	16	27	14
ATATGGCTCAATTGTG	alt_6094_new	0	0	0	0	0	0	0	0	0	0
GGTGCAACGCCTTGAG	alt_6094_new	0	0	0	0	0	0	0	0	0	0
AGCTGGCCTTCCATCT	alt_6094_new	0	0	0	0	0	0	0	0	0	0
ATTCAATTATCCCGAA	alt_6094_new	0	0	0	0	0	0	0	0	0	0
CAGCACGTACAACTAC	alt_6094_new	24	36	36	31	34	21	34	32	53	29
CCTGTTTCTAGTTTAA	alt_6094_new	35	59	47	42	62	37	71	43	75	42
GTTTTTTATCCAGATC	alt_6094_new	25	24	19	26	17	25	24	16	33	20
TCGCTTCTAACGTTGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AATTTTAACCGGTAAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCGGTCAGCCTGGAGG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTGCCTTTTATCGGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AATTCCACATAACGGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AGTGTACTACTTCTAA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GAATTGGTACGTGCAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GCGTAGTCAGCGCCAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCCTCGCATCCA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GGGAAGTCAGGGACAA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCATGTATTGGATTCA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCTACCGTGTTGCTGG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTCGTTTTTTTCATGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCTGTGTTCAACGATT	ref_1373_missing	3	3	0	1	2	4	6	2	3	1
ACTGCTGCACGCGCCA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATGTCAGGCGTGTCAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AAATAAAGGAAAAGAC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCGGACTGTAAATGCG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AGATGCATCACATATG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTCTATTACAGGGGAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CTCTCGCTATCCCACC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTCCGCGTAGTTTCGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATGCCTATCTCCAACG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GGTGCCCACTTATTCC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ACCGTTCGTAATTCTC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTACGTCATGTTGGC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CCCAAAGTGGCCCACG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CACACGCATTGTACGA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GGAGGGCGTTTGCCTT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGCTCCTATCTGTTTG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCCCATAGTTTCCCTT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCTACCGGGCATCACC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CCGATCATCCGGGCGA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AACGGTTGATCTACTC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ACCACGTAACCTTGAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CCTGAGACCCATATGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTCAGAGTGTCATAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATCGTTAGCCCAATTA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CGGGGGTGTGACCATT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATGCTGCTTTCCGTGA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATTCGTCATTTTGCTA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GGTATTCTCTGCAAGG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CGTGTACTCACACGGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATGTCCACCGTCGAAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCCCTCTATACTCGCC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TACTGGACGTCTCCAA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTTGGAATCCACAAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CGTACTCACTCGACCG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTACATAGTTTCGTCC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGTTTCATCTTT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTAGGGTGTTGTATTC	alt_1373_missing	2	7	7	7	20	7	10	4	11	10
GGAGGGCGTTTTTGAC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ACCTCGGTATTAGATT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CTAGTGGATGATATTC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AAGCTGCGGAGGACTC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CATCCTGGTGCTGTAC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATAGACTCTTTTTTTT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TACAGCGAATTTATAC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GACGGAAACACTCTGA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTTATTAGTCTACACA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TAAACAATCGGGTGGG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CCACCGTTCAAAGCTC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GCGATCCACTGCCAGC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ACTTGCCATTTTTTTA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GGGTGGTTTACACCCG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTACCGGATTGG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTGGCATGTAGACCTA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTAATCCTCCAAACAG	alt_1373_missing	17	5	15	29	7	25	11	15	6	12
CCGGAGCTTATTAGAA	alt_1373_missing	7	8	6	10	12	7	5	1	2	5
TCTTCTATCTGCTGGA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTGTTGCTTCAGTTG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CTGATACGTGCATCCG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATCATCATATAATCAC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GGGCTAGTCTGGCAAG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTAGCACGTCTGCGGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATAAGCTGGAGTGGGC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTAGGGGTCCATGCAA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGCGAATCAGGTCCCT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTTATCTAGGCGGAAC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCTGCCCCAAATATAA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CTACGTATCCCAAGGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AATTACAGTAACTTCG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTATGAGATACTTAGA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TTCTCGTTTTGGAAAG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTACCAGAGTATTCA	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCCATGTTATATCAGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CAGTTTCCTGGATGGG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CATATCCAAAAGTCAG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CTCTTCATTTGTCATG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTACAGGATCGACGCG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CAGCTTAGCTCGCCAG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GATTTTGTGTGCCATC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AGTAATAACCGTCTGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TAGGTTTCATGACGAA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GAACGATATATGGAGC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GTATGATTTCTCTTTG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CATTGAAGGTTCGGGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATTTCGTTTCTGGTGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TAGCATATATCCTACG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GCCATTCAGCCCCGGT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTGAGTGCAATTATG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
AGCATTCCGTTACCAT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
GAATTTTATGTTACCC	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
CATGGTAATCTCCCGG	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
TCCTCAGACGGAAACT	alt_1373_missing	0	0	0	0	0	0	0	0	0	0
ATCAAACCAACGGCCT	ref_5748_new	5	20	9	10	23	11	15	8	13	3
GCCTTCACGCCCAGTA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CTCTGCATATGATTAG	ref_5748_new	12	44	20	12	26	19	49	13	58	11
ACTGGATACGACTTCT	ref_5748_new	8	11	8	3	11	1	13	4	18	2
TTTTTAGGACCGGTCG	ref_5748_new	10	27	14	8	27	17	30	17	29	7
CAATCTTTTAAGGCAT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
AATTTACCATCAATAA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TATTTCCTCAACTGAC	ref_5748_new	10	28	9	12	34	11	22	4	28	12
TGTTACAGTTATTTGG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TGCGTCACTTACCTAT	ref_5748_new	9	63	4	6	61	6	63	5	71	3
GAGACTGACAAGTAGG	ref_5748_new	5	12	3	14	13	9	15	7	27	11
TCCCGCATTTTTTCGC	ref_5748_new	1	19	5	2	25	2	23	5	22	10
TCTCATTCTCCCAACT	ref_5748_new	3	16	5	5	15	4	13	4	11	6
GAGAAGCCATATCCAG	ref_5748_new	20	46	31	21	34	18	46	31	51	33
TTTCGAGAATTCTGTA	ref_5748_new	9	14	9	1	17	10	21	9	19	7
TCTTTTCATGCGTCAT	ref_5748_new	6	11	5	7	17	6	15	1	6	7
CCACGTGTGCGTCGCG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CAAAGACGAATCCTTG	ref_5748_new	7	17	8	4	17	7	9	4	19	8
AGAACCGTCGTGCTTC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GTTGTGAGAGCCCCCT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CGAAACCCATCGGGTT	ref_5748_new	42	92	47	39	76	32	93	29	101	34
ATGCATTTTATTTAAC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ATCGCGCCAACGTATA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CGAATTGGCTCGCAAA	ref_5748_new	16	44	14	20	33	11	35	15	30	11
CATGTGGTCCTCTACA	ref_5748_new	1	17	6	7	12	5	10	2	15	5
CATGATCTATGTTCCC	ref_5748_new	5	10	3	0	7	1	6	3	11	2
CGTCAATCGCTTATGA	ref_5748_new	9	18	10	7	34	10	28	10	28	12
TCAAAGACTGACAATC	ref_5748_new	3	12	6	2	12	1	14	6	16	2
CCTCCGTCCCCTGCTG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TTAAACTTACCGCGCC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CCGACCATGTGTAATT	ref_5748_new	112	328	138	122	329	94	322	121	323	114
GTTGTGAGAGACCCCT	ref_5748_new	15	41	17	23	39	20	48	24	52	22
AAGCGATTTATTTACG	ref_5748_new	41	84	50	45	83	47	93	45	98	26
CCATTTTTTTTGACGT	ref_5748_new	14	38	21	18	44	21	47	13	45	16
GATTTCTTTCGCTGTC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TGATTGCATGTTATTG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ACGTATTTTCTTAAGT	ref_5748_new	17	30	24	21	36	13	24	11	51	18
GGCTGCGTATGATTTT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCTTACCACCTCGCCT	ref_5748_new	2	13	4	3	12	1	18	3	16	6
AGGATTTGCAAGTACT	ref_5748_new	8	26	14	13	29	16	26	10	26	16
ATTTGAAAGTCGCCGG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
AACTCTTGTACTGCTT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TAATCCATGGGTCTAC	ref_5748_new	6	26	9	5	31	9	14	12	23	9
CGGAAGTTTATGGCTG	ref_5748_new	5	17	6	2	6	3	15	7	11	1
ATGTAGAACGTCTCTG	ref_5748_new	4	5	1	4	21	3	8	3	6	4
TCTGGTATCGGCTCGC	ref_5748_new	3	8	12	5	8	8	11	7	10	7
ACTATTCTGTTCATAT	ref_5748_new	10	4	8	1	13	0	14	1	6	6
TCGTTTTACTGGATTT	ref_5748_new	3	1	3	5	13	6	10	3	9	9
CTGCGTTTTTAGACTA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CCGTGCACATTTCTTC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GGTCTATCAGGCCCGC	ref_5748_new	1	9	5	4	6	3	6	5	10	4
AACAGCGTTGCTATAG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CACGAGTTTTACTTAG	ref_5748_new	22	50	31	23	55	30	64	20	56	20
GGGAAAACTCCCCGAC	ref_5748_new	8	91	15	13	101	15	83	9	93	12
TTGATATTACACCAAA	ref_5748_new	16	28	17	12	31	13	31	10	30	9
TGGTATAACTGACTTG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ATCCGATATCGGAGCG	ref_5748_new	12	29	9	14	34	8	35	10	34	6
GCTAATGTTGGTGTGA	ref_5748_new	31	67	40	26	63	28	63	29	76	26
GTGTAGCACATAGAGA	ref_5748_new	3	12	9	7	17	5	25	9	10	7
TTGGATGCGTCCGTTG	ref_5748_new	4	13	8	3	3	5	7	7	8	6
CTGGACTTTAGTATTT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TTTGAGTTTGGTTATG	ref_5748_new	4	20	9	12	17	10	31	12	17	9
CGTCTTTCCGATATCG	ref_5748_new	4	5	9	4	10	6	10	0	5	2
ATCAGAACACGCTTTA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TTTAAGTTGACGATAT	ref_5748_new	26	67	35	22	43	19	53	24	37	14
TTCTGAACCCATTCGT	ref_5748_new	19	57	41	34	74	36	73	27	73	23
TGGTGTACGAACGAGT	ref_5748_new	25	56	27	20	57	27	62	27	59	17
TTCGGGAGTGTTTCAG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
AACATGCTCTATTAGC	ref_5748_new	12	61	25	20	45	24	61	27	62	14
GCCAACTTTTTAATAT	ref_5748_new	2	24	11	6	18	7	21	6	16	6
CGGATTAGGCTTAACA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GGCACTATGAACAGTA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
AAATGCCTTCTCTTTT	ref_5748_new	29	40	41	29	39	35	64	27	53	27
TGGGCTTGGTTTCACT	ref_5748_new	3	6	1	5	7	5	16	3	10	3
GCCGACCACGTCTTTG	ref_5748_new	2	3	2	3	1	0	4	1	7	0
CGCATAAAGCAGTACC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TAGGATTCGTATGCTC	ref_5748_new	0	0	1	2	2	1	1	2	4	1
AATGATCCCGCGCTTT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCTTCGCTGTAGCAAG	ref_5748_new	19	49	29	24	70	30	55	23	66	27
TACTCCCGAATACTGT	ref_5748_new	1	8	4	1	15	4	9	1	10	1
TGGTATGTCTGCGTCG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ATGCACCTCGGAGGTT	ref_5748_new	0	1	0	0	0	1	0	0	0	0
GTTAAGACCGGTCCTC	ref_5748_new	109	209	111	90	215	93	205	91	256	91
TCTTAGCTGTGTAAGA	ref_5748_new	20	55	27	25	52	16	59	27	64	16
TCGGGAGTTAACCCCC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CTCTGTTTGCGGTAAT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
AGCTGGTGCCAGTGTT	ref_5748_new	18	40	22	20	35	12	38	19	47	25
TTTCGACTCTACGGTG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TATCCTTCCAAGGGTC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ATTACATCAGGCTCCA	ref_5748_new	1	10	6	9	7	2	7	0	16	5
TTTAACATGAATTCGA	ref_5748_new	45	136	76	63	134	43	108	43	135	57
TGCGTATGCCTCTGAA	ref_5748_new	4	11	3	6	8	5	8	3	11	8
AAACCCTGGAGCTATC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCCCTCAAAACATTTT	ref_5748_new	5	15	8	2	19	9	15	5	21	2
ACTTGGAAGTGGATGA	ref_5748_new	36	92	54	37	86	42	84	31	82	40
AACCTTCATCGTTGAC	ref_5748_new	22	55	40	29	57	27	48	17	63	26
TGACGTGCCTGGCTAA	ref_5748_new	5	12	12	5	18	5	17	1	15	6
CTGACTTAAGGGTAGA	ref_5748_new	37	72	44	32	67	22	65	29	70	29
TTACACCCGGCTGTAT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CGTTAAAGTCCTTATC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCATTGACGATTGTCA	ref_5748_new	16	28	16	14	26	20	26	13	22	15
ATGTCATATTCAGGTG	ref_5748_new	2	2	2	1	0	4	8	1	4	3
GTGGGAAACTCTACCC	ref_5748_new	0	7	0	2	8	4	13	1	16	2
TGATCCCGCTAGTGCT	ref_5748_new	4	19	8	7	12	7	9	4	19	2
CGATCAGCGCGGGGCA	ref_5748_new	6	19	3	4	8	5	18	8	18	2
TGCGAAACCCTTATCA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GTCACGGCTTCCACTG	ref_5748_new	25	79	42	33	61	41	90	22	86	27
GTTCTTGCATACTTGT	ref_5748_new	7	9	9	4	8	6	12	9	11	7
TACTATATAATATTTT	ref_5748_new	11	23	12	8	16	9	29	14	12	11
GGAAGTTCCTCGAGCA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCAATTTTCAATCTGC	ref_5748_new	1	5	0	6	7	1	2	1	8	1
GTGCCTCAAGTATACC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TAGGCAAATCTTCTCA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ATGGGGAAGTCAAGCC	ref_5748_new	22	36	20	22	32	30	49	23	51	19
GTTCGAGTTCCTGCCC	ref_5748_new	6	6	4	4	2	3	5	4	7	0
ACGTTGGGTCCGGTGG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CGCTCTTCTCTTTTGT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TGCTACATGAGTCTCG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GTCCTTACGGTCCCGA	ref_5748_new	32	61	40	30	70	30	69	19	54	18
AGTTTAATGCTCTTTC	ref_5748_new	6	14	9	7	20	10	18	7	15	8
AATTTGGACGCACACA	ref_5748_new	15	14	21	10	29	18	21	18	29	14
TGAACTATCTGTGTCT	ref_5748_new	6	13	4	5	14	5	11	1	29	5
ACTTACTTATCCTGCT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
AGGCTTTATAGTCGTC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GAGGAGCGCATCTCCA	ref_5748_new	11	29	18	12	22	16	35	7	26	9
CGACACCCACTTTGTA	ref_5748_new	13	24	9	8	13	8	14	4	27	6
GTCCAATCAAGTAGCG	ref_5748_new	8	23	12	7	19	8	15	4	25	7
ATTCTCTAACGAGTAG	ref_5748_new	38	49	29	27	68	25	54	25	88	25
TTGGAACTTTCGTAAT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GGTAGTTTGGTCTTCC	ref_5748_new	16	69	38	31	76	37	70	31	73	18
GTTTGCTCTGGCTTTT	ref_5748_new	10	18	17	4	19	12	17	3	24	6
GACAGGAAAGATACTA	ref_5748_new	4	6	5	5	8	4	11	4	11	1
TTTAGCCGCCGGCTAT	ref_5748_new	16	37	15	11	34	14	34	13	41	13
GCCTTGTGGTTCACGT	ref_5748_new	6	8	7	2	14	2	14	3	17	10
TGATTGCGCTAGACTC	ref_5748_new	4	4	1	1	3	0	1	0	6	0
GAGCATTTCGGGACCG	ref_5748_new	11	21	10	11	18	4	13	6	13	9
CTGTATGGCGGAGACC	ref_5748_new	20	40	23	18	42	20	43	19	38	16
GCAGCATGAATCACGA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CTCTCCGCTATGTGTA	ref_5748_new	13	42	24	16	40	14	35	12	34	13
TTTTTCAAAGTATGGT	ref_5748_new	7	12	10	13	16	7	39	9	22	12
AGTCGATAGGTGTCTG	ref_5748_new	9	9	5	6	12	5	6	5	21	5
TCCTTGTACGCTATCC	ref_5748_new	6	27	10	16	28	7	26	12	24	14
TGCCCTCAAAGTCGTT	ref_5748_new	24	56	18	10	54	18	49	14	58	21
TCCATTCTGTCGCTTT	ref_5748_new	9	13	9	5	10	6	14	6	16	7
GGACCGGTTCTCCAGG	ref_5748_new	26	54	23	26	52	26	40	19	71	16
TTTCGTGCGGCCGTAT	ref_5748_new	10	20	16	17	30	18	31	13	31	8
CGGTGCGCAACACCTA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TGGGTCTGTTAACGAT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ACGACTTTCCTGAATT	ref_5748_new	25	43	29	25	49	19	51	21	53	22
GTTGAATGTTTAGAAC	ref_5748_new	6	29	4	5	17	8	28	8	27	6
GGTGCCCCAGGTAAAA	ref_5748_new	27	34	18	17	48	15	29	16	29	16
TATTGTGAGTATTGCT	ref_5748_new	0	4	2	0	2	1	3	1	0	1
TGTATCTTCTGCCGAG	ref_5748_new	24	28	23	24	47	22	49	21	54	21
GTCGACAAGGACTATC	ref_5748_new	9	6	2	3	8	6	7	2	5	4
GGCCTGACCGAAAATA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
AGTCCCATAAACACTC	ref_5748_new	27	64	43	26	41	24	63	22	42	21
TATACGTTCTACTATC	ref_5748_new	6	11	8	11	13	6	13	2	15	6
GGTTAATCCAAACGCC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CTCCTCACGCTAAGGT	ref_5748_new	28	77	31	30	72	21	76	26	93	22
TTCTCAGTAATAGCCG	ref_5748_new	3	2	12	2	13	3	11	1	10	4
TGCTCATGATTCGCCC	ref_5748_new	24	47	29	19	54	25	55	21	32	16
TGTCAGTAGTTAACGT	ref_5748_new	5	5	7	5	10	6	14	5	11	2
TATATCGTGCCTATGT	ref_5748_new	36	78	48	43	84	35	80	34	97	37
GCGTCAGTATACTGAC	ref_5748_new	7	18	12	9	21	5	21	9	22	4
ACGGTGCCACAGCTAG	ref_5748_new	13	26	24	14	30	12	38	14	35	13
AGTTTGTCCATTGCTG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
ATTTTTAGGGCTGATT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TGAATCACGTGTGATG	ref_5748_new	8	10	10	5	9	3	15	6	17	6
GGCTAGATGGAGCACT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCAAGGACGACAATAA	ref_5748_new	8	17	15	10	15	8	21	12	16	3
CGTATTAGGCCTTGCA	ref_5748_new	21	55	20	24	58	22	56	20	58	16
TGAATCGCTCCCGATT	ref_5748_new	4	11	6	6	21	3	15	6	11	8
GGTCCGATGCGCAACA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GTTAGGGGCGAATTGG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TGCATTGAGTGATTAT	ref_5748_new	9	21	15	15	32	14	25	11	30	9
ACGTAATTACATGAGT	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GTGGCAATTAACGCTC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GTTTATGCATCTGAAG	ref_5748_new	0	0	0	0	0	0	0	0	0	0
CTCTATCAGCATCTTA	ref_5748_new	4	6	10	2	14	1	10	3	6	2
AGCTTTATCATTGCTC	ref_5748_new	0	0	0	0	0	0	0	0	0	0
TCATTTGCCTTCGGTG	ref_5748_new	30	75	34	42	68	24	70	25	85	26
TTGAGAAATCATCTAG	ref_5748_new	2	9	7	3	24	3	16	5	3	9
TCCCTTTCGAACCTAC	ref_5748_new	3	8	4	3	5	2	15	1	12	5
TCAGTATTTCCAATCA	ref_5748_new	0	0	0	0	0	0	0	0	0	0
GCTATATACTACTTCA	alt_3303_reverse	75	68	116	101	63	84	62	92	53	104
ATGGCCTCATTCTCGG	alt_3303_reverse	153	107	216	155	114	156	115	171	115	148
ACCAGGTCATACTCAG	alt_3303_reverse	107	83	151	134	81	119	69	131	99	109
TGTAACATACCGAAAT	alt_3303_reverse	57	28	73	72	45	51	58	56	54	51
TGTATTTTGCAGCTCA	alt_3303_reverse	88	60	102	85	75	95	54	75	58	57
TCTTTCGTAGCCGTGA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCCTTCATTTTTG	alt_3303_reverse	4	6	16	6	3	7	3	7	2	6
ACGGCGTAGTTTGAGC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
ATCACTGACTATGGAT	alt_3303_reverse	7	4	4	8	5	5	6	5	7	7
CATTTGGCTGTCTTTC	alt_3303_reverse	9	12	12	10	6	14	10	9	11	8
CAAGTTAGCTGCCCCC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGCATACGGAACC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTACTTATAATGT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTTTGCTACGGCT	alt_3303_reverse	46	40	46	60	26	53	31	48	31	30
CCATAGTTCAGTCAGA	alt_3303_reverse	22	10	18	22	13	13	18	17	13	15
TCGTGCTTGGGCTTGT	alt_3303_reverse	75	64	85	79	64	64	75	76	69	81
ACGGGGACATGCTTCT	alt_3303_reverse	21	13	29	21	17	22	9	17	13	27
TTCCAAAGGTTTTACT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTCGAACTTTAA	alt_3303_reverse	3	9	4	2	13	3	11	5	14	3
TATCTAATGCTTTTTT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTCCGTAAGAAAG	alt_3303_reverse	20	16	42	22	11	19	16	28	17	23
TAACACGTACATATCA	alt_3303_reverse	18	12	23	16	8	17	10	19	14	17
CTCTGAACGAGTAAAG	alt_3303_reverse	19	10	37	30	32	38	23	21	16	28
TTATGGGTCCCCATGT	alt_3303_reverse	31	21	31	36	24	30	27	24	25	28
TTACTAGCTCTGGCAT	alt_3303_reverse	77	56	93	73	50	59	67	50	68	60
GCCGAGTCATTAGAAG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGATCGCACAACT	alt_3303_reverse	101	69	126	111	70	104	77	94	59	96
TCGGGCATGATCGAGT	alt_3303_reverse	10	10	22	28	10	20	13	17	16	19
CCTTCGTTGGTTGTGG	alt_3303_reverse	24	23	17	22	30	16	23	25	23	26
GCGCTGTTACCCCTGG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTTTACCCGCGCC	alt_3303_reverse	183	136	218	180	107	169	124	132	136	142
ATCCTAGCCCTTGCAG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTACCTCTCATA	alt_3303_reverse	23	14	20	21	14	18	14	18	13	18
CACTCTCTTTCATACG	alt_3303_reverse	51	47	40	46	38	34	45	29	46	38
CGTCCCTAGAGTAGTA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGGGCCTCGTCCG	alt_3303_reverse	22	19	39	34	24	31	14	28	33	27
TGGAAAGCTCCCACCG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTCATATGATGTCATG	alt_3303_reverse	27	30	28	23	16	19	15	25	20	23
TTCCGATTGGCGCCGC	alt_3303_reverse	37	6	25	32	17	25	24	18	23	31
TACGGAGCGGGCATTT	alt_3303_reverse	54	37	69	52	30	59	39	39	45	39
AGGTTTGATTGCTCGC	alt_3303_reverse	316	204	352	320	206	297	221	305	201	291
ATCCTTTTCATCTTTT	ref_3303_reverse	83	79	116	102	83	97	64	84	69	72
CATGTACCGGTGTGGT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TGTAAGAGTTCCTCAT	alt_3303_reverse	39	31	54	50	34	42	20	39	42	28
ACTCAGGTTCTAAATC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCGGTCTCGACCC	alt_3303_reverse	30	19	31	31	23	25	21	32	6	25
TGCATTGCATTTGCTC	alt_3303_reverse	30	29	46	34	23	29	21	33	27	30
CTGTTTTTGCTAATAA	alt_3303_reverse	16	18	13	19	6	18	18	11	17	16
TTGGTCGATTACGCTT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TGGCACCTACCTAATC	alt_3303_reverse	6	9	7	3	2	10	4	4	7	5
CCATTTGTCCCGTCAT	alt_3303_reverse	90	92	134	95	102	93	79	86	109	98
CCTCGCAGCTTACTCT	alt_3303_reverse	30	37	38	35	32	35	41	24	38	20
AAATTTAGGAATAATG	alt_3303_reverse	26	16	22	33	19	20	19	32	16	24
TTGACCCTGGCACTAG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTGATCCTAATCAATT	alt_3303_reverse	47	25	67	54	32	45	43	45	39	40
TATAGATGTTCACGAA	alt_3303_reverse	37	20	37	54	25	28	21	28	25	41
TTATGCGCAAATGGGG	alt_3303_reverse	3	1	3	1	2	3	0	0	4	3
CTGGCTACTCTCGAAA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
ATCTACGACAACTTGT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
AGTCAGTTCGTTCGAA	alt_3303_reverse	8	2	1	3	2	1	1	4	4	0
CATTCTGCAAATTCAG	alt_3303_reverse	122	72	137	117	94	101	90	102	84	127
GGGGCTGTTACGAACA	alt_3303_reverse	109	59	121	90	67	102	60	103	76	109
ACTTATACTTGGTCTT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTTACCGGTACCAAGA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGTTTGTTTTCTT	alt_3303_reverse	127	61	143	116	58	122	78	128	84	108
AAGTGTATAATTTGAA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TTGATCCGAATATGAA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTCAAGATATAGC	alt_3303_reverse	12	9	19	11	16	10	14	14	13	20
ATTTGGGGGAGCTGGC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTCATGGCGTTGA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GTGCAATGTTTCGTAG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TAATTTTTCTGAGACG	alt_3303_reverse	0	2	2	1	2	4	4	1	2	0
TAGCGCCTTTTATCCC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGTGTCCCATGCC	alt_3303_reverse	79	52	94	71	46	68	40	71	45	45
GTTAGACCACACGTTC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGCCGGTACAGTT	alt_3303_reverse	30	30	35	40	20	32	19	32	25	24
CCGCATTTAGAGACCG	alt_3303_reverse	524	314	592	476	320	463	331	460	364	476
TGTCCTACCTTTACCT	alt_3303_reverse	112	57	101	91	74	81	77	88	53	79
TGGTTAAGACTATTTC	alt_3303_reverse	10	8	15	17	9	21	14	13	14	16
TAAAGTAAGTGTTGGG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGAATGTTCATGC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTTAACTGTTAGTTAG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GGTACTTCCTTTGCTT	alt_3303_reverse	38	11	36	26	22	24	20	31	19	27
TACTTCATTAAAGCCA	ref_3303_reverse	88	87	126	96	53	92	64	86	73	82
AACGTCAGCTCTTATG	alt_3303_reverse	67	41	60	66	38	33	53	46	61	48
CTTCTTTGCGTATCAA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCCACTTTTTTCT	alt_3303_reverse	9	25	12	16	21	18	30	17	16	15
CTTCCACTACTCCTGA	alt_3303_reverse	7	4	4	11	4	8	4	5	1	7
GCTATACTGTGTGCGA	alt_3303_reverse	65	36	78	68	40	55	39	53	57	57
ACAGTATTCCGGGATT	alt_3303_reverse	9	9	9	12	11	7	10	8	6	6
TTGGCGAATGTGCAGT	alt_3303_reverse	144	97	202	151	96	139	126	120	114	143
GATATTACCTGTACCG	ref_3303_reverse	77	65	66	76	73	66	75	61	85	57
TCATTCCACTCGTTCA	alt_3303_reverse	24	14	26	22	23	10	16	11	16	15
TTACGAAACTTATGAG	alt_3303_reverse	30	19	26	31	23	25	13	16	11	22
TGATTCTTTGCTTGGA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCTATTCTGAAATGAA	alt_3303_reverse	24	7	23	20	12	11	20	33	17	20
TCCTAACATTGCCTTT	alt_3303_reverse	30	10	30	32	14	25	18	12	23	15
GATCGGCTATCAGCAA	alt_3303_reverse	37	27	48	41	29	39	28	35	28	30
TTTTATTAGTCCGGCT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCTTAGCCCATTG	alt_3303_reverse	16	15	39	22	19	14	12	31	14	19
CCCACTGCATTAACTC	alt_3303_reverse	43	24	49	45	22	25	36	36	21	36
ACTGAGTGCCTGGTCA	alt_3303_reverse	30	20	34	26	23	21	17	23	19	28
GATCTAACAACTGTGC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTCTCTATCATTC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
AAAAGTAAACTTTCAG	alt_3303_reverse	197	130	236	222	119	190	126	194	127	137
TTGTTACGCTCAGCTC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGATTCCATTAGT	alt_3303_reverse	49	47	71	57	37	46	41	43	49	55
CAGCCTGTTCCGACTA	alt_3303_reverse	4	10	9	13	27	5	24	6	18	11
CTCTCCACTTCAAGTT	alt_3303_reverse	83	51	82	66	73	92	80	77	70	58
CCTAGCCTCCATTTAG	alt_3303_reverse	24	28	24	20	31	16	31	18	26	10
ATCTATATGGTCCCGG	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GATCGTTAACGCCAGC	alt_3303_reverse	14	8	14	14	7	9	8	18	11	10
CCGCATTTTAGCGTGC	alt_3303_reverse	14	9	18	18	10	18	15	15	8	4
TCATGGCTCCCCTTGT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
GTAACAATACCTCTCT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGCTAAGGCCGGG	alt_3303_reverse	34	19	40	35	20	43	33	47	28	43
CGCGCGTTTACTACTA	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
ACCGATGGCTATGCAT	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTGACTGGGCAAC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCATAGGGACTCG	ref_3303_reverse	0	1	8	3	1	6	1	5	2	1
GTATTCTTGTGCCGTT	alt_3303_reverse	160	100	195	165	119	169	97	165	109	146
TTCTCGCTTAGCACGT	alt_3303_reverse	39	28	44	39	42	39	20	40	38	20
TCTACACACCTGCGAC	alt_3303_reverse	3	3	19	6	5	7	7	3	5	4
GTGACGGCTTCACACC	alt_3303_reverse	20	31	41	40	25	32	20	41	24	26
GGCAATCCCGTACGTC	alt_3303_reverse	40	34	46	44	35	51	30	45	32	30
ATGTATTGGTCAGACC	alt_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCACTAACTGGATAGT	alt_3303_reverse	29	21	52	29	21	37	26	42	26	24
GTCCTGACCCGGGTTC	alt_3303_reverse	13	15	16	8	9	11	9	7	12	14
TGGGAGGTTAATCGCC	alt_3303_reverse	61	28	79	67	35	79	47	75	45	57
ATACTATCATGTCTAT	ref_3746_fdr	18	24	18	11	14	18	30	8	21	16
AGGCCGCATTTGCTAT	ref_3746_fdr	38	43	36	37	45	40	58	25	46	25
ATCTCACCTTGTTGAG	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
GGGTAGCCTATATGCA	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTGGATTGTGTAT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
AGAGTATTTTTCCGCC	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGAACGCAACAAA	ref_3746_fdr	28	42	56	34	49	32	41	39	38	44
ATTTTTTGTACCTTCA	ref_3746_fdr	139	186	135	126	169	141	180	143	175	92
CAGGGTTCCATGCTGG	ref_3746_fdr	20	18	11	13	10	8	14	22	24	17
ACTGGTTTCTATTAGT	ref_3746_fdr	13	14	16	16	22	16	20	10	19	16
TTGCGACGATTTACAT	ref_3746_fdr	10	18	11	6	18	12	3	2	29	7
TAGTAGCATGCGCGAA	ref_3746_fdr	21	30	22	8	14	28	33	23	30	10
CGTGAATTTCACGCCC	ref_3746_fdr	4	31	6	4	29	2	16	0	17	4
TTAATCATGGCTTTTA	ref_3746_fdr	32	34	40	30	48	30	32	23	37	27
GTGAGGTAATCGCAAA	ref_3746_fdr	40	44	35	36	50	35	46	30	54	39
TAGGATGTCTCCAGGA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTCTTCCCTTTAA	ref_3746_fdr	25	35	48	36	41	38	56	36	62	29
TTGATTAACCTACTAA	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
AAACTGTATCCCTTAC	ref_3746_fdr	48	46	51	38	60	37	63	41	78	31
CTGTGGACCTCATGTG	ref_3746_fdr	12	14	8	3	14	11	17	5	9	6
ACAGGACGCTCAGGGT	ref_3746_fdr	44	53	50	51	51	42	55	53	53	29
CGTTTCTAGGTTGTCA	ref_3746_fdr	3	2	4	0	4	3	5	4	8	5
TACCTAACAATCGCGT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
ACTCATATTAGTGTTC	ref_3746_fdr	16	41	24	23	44	22	37	31	61	19
TTCAATGGAATTTGGG	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TCTATCGCTTGTAACC	ref_3746_fdr	16	18	20	27	21	11	9	15	19	7
GGCGTCTAAGTGTGCA	ref_3746_fdr	40	61	40	36	65	32	63	30	70	34
CACTTAGTATGTTGTC	ref_3746_fdr	13	25	19	26	29	17	30	14	15	18
CACTAGGCGGCATGTG	ref_3746_fdr	12	6	20	4	15	7	15	9	9	7
AATTACCTGTACGATA	alt_3746_fdr	4	4	6	2	16	4	13	11	7	6
GTTCACATAGGGTATG	ref_3746_fdr	41	61	60	44	55	49	62	45	74	39
GGAAAATGAGGGCTTG	alt_3746_fdr	99	129	134	96	124	109	139	94	151	86
TCACGGATTGTCTGGT	ref_3746_fdr	10	15	7	4	5	11	14	10	14	2
CGAGCCTGACGTTGTG	ref_3746_fdr	8	11	11	15	20	12	16	11	24	12
TTAAGCCAGCTTTCGC	ref_3746_fdr	51	83	56	45	76	59	70	53	88	43
TCTTCCTAGCACTTTG	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
CGGTATCGGCCTTTCG	ref_3746_fdr	42	47	61	57	47	43	62	57	61	52
CTCGTACACTCATCCA	ref_3746_fdr	5	21	8	5	12	0	31	5	29	3
ACTCGGATACGGGCCG	ref_3746_fdr	14	9	20	11	11	14	17	23	12	15
CATTAACTTGCGTCAA	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
ATATTAAGTTCCAACT	ref_3746_fdr	41	42	41	35	53	31	56	25	35	41
TGCATTTGAAGCGCCC	ref_3746_fdr	22	32	26	28	45	24	34	23	42	21
ATTCCCTCATCGGCTT	ref_3746_fdr	31	33	44	34	51	30	53	26	35	26
CCTTACATGTGCAAGA	ref_3746_fdr	48	50	56	33	59	41	58	33	83	32
TACAACCCTAAAGCAC	ref_3746_fdr	52	84	57	64	87	43	84	45	102	52
TAATTTTAGCTGTGCT	ref_3746_fdr	54	72	58	57	80	44	85	58	80	58
CTCCTTTGGGCACCTT	ref_3746_fdr	11	22	19	13	24	17	21	10	15	12
AGCTTGCTATATTTCC	ref_3746_fdr	136	184	131	131	177	104	179	122	182	113
AGCTTGCTATAATTCC	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGAATCGGGTTGT	ref_3746_fdr	9	18	14	12	28	7	34	16	32	9
CTGCACCCCGGCTATA	ref_3746_fdr	181	271	177	176	246	193	269	166	273	148
AAGCATCACTCGATTC	ref_3746_fdr	137	228	200	177	196	153	227	147	216	157
TGCTGGGTGCCTTCCT	ref_3746_fdr	31	48	45	47	43	30	53	36	48	34
CATGTGCTTCATTGGT	alt_3746_fdr	28	23	24	19	32	20	31	25	32	8
TGCGCGGAGGAGGAGT	ref_3746_fdr	18	24	23	20	32	20	30	31	29	17
TGGGGATACTACGTTA	ref_3746_fdr	17	33	27	28	26	23	24	31	29	25
ACCGATCAGTTCAGTG	ref_3746_fdr	11	25	13	22	21	20	21	15	15	17
GTTATGCTCCGCTCAA	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTACAGACGGAAG	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
CCACGGCGGGCATCGT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TGATTAATTAGGCGTC	ref_3746_fdr	16	7	14	12	6	9	14	13	15	10
TTGAGAGACATTGTGA	alt_3746_fdr	53	74	65	48	68	35	80	50	84	41
GACGAGTTAGCGCCGT	ref_3746_fdr	13	24	14	18	29	14	13	17	19	12
TCGTTCTTAGTTGCTT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTGCACATTTTTT	ref_3746_fdr	6	21	12	7	20	10	8	11	18	15
TCGGCTTGATGTACCC	ref_3746_fdr	24	46	44	38	59	17	57	27	52	31
ATCGTTTACTTTGTAG	alt_3746_fdr	170	187	212	179	200	179	221	163	206	159
TTCAGGGTTCTGATGC	ref_3746_fdr	22	27	20	18	18	10	25	11	25	16
CCAGCAATGGCAGCTA	ref_3746_fdr	5	17	9	10	21	9	17	6	26	6
TCAGAGCACTACACTG	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCTTGTTAAAGTC	ref_3746_fdr	52	50	52	50	46	50	56	41	59	48
CCCTCTGGATCACTTA	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
GTAAACTCCGCATCCT	ref_3746_fdr	44	78	52	37	67	40	70	44	60	49
AGCTACTAGCACCTTA	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
ATTTACTAACTGGACT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCTTCCCTCGCT	ref_3746_fdr	39	41	43	30	43	27	52	33	43	19
TTCCGGGGATTGGATA	ref_3746_fdr	58	50	62	44	54	41	56	52	55	39
TCAGGGCCTGCGTAAC	ref_3746_fdr	36	41	30	53	40	40	41	19	57	29
TTATGCATACAGTTCC	ref_3746_fdr	68	96	92	51	88	71	111	54	85	69
GATTAGTCAATTTGGC	ref_3746_fdr	24	14	27	19	40	24	32	20	26	15
GGTTTAACCAAAGCGA	ref_3746_fdr	107	147	129	120	146	116	155	102	119	92
TCATGTTAACGTCACT	ref_3746_fdr	31	57	43	31	60	35	65	29	59	18
TGGACACGCGACCCGA	ref_3746_fdr	53	71	37	30	29	28	60	28	46	48
GGATTTGTCTCTTTTT	ref_3746_fdr	110	132	111	130	119	102	124	97	122	106
GGGGGGAGGCATGGTC	ref_3746_fdr	47	78	93	57	78	64	86	80	88	75
AAAATTGCATGGATAT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
GACCTCTGTCTTGAGT	ref_3746_fdr	37	45	32	25	40	32	25	23	37	24
GGAACCACACGTTACC	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TTTCATTTGCAAATAC	ref_3746_fdr	12	31	17	17	28	22	32	14	22	23
CACTATGTACGTGTTC	ref_3746_fdr	2	2	2	0	0	3	2	1	2	0
TTATATAATCAGTCTC	ref_3746_fdr	32	27	19	42	20	16	32	27	27	12
CTTGGAATTACCGATT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCTTCCCTGGATT	ref_3746_fdr	80	88	84	65	83	70	101	52	94	73
CATTTGCAGTGCCCAT	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TACATTCTAACGTGCG	ref_3746_fdr	29	44	40	28	29	31	41	13	43	20
AATTATTCAGTCAAGT	ref_3746_fdr	8	12	8	10	24	5	17	3	19	9
CACAGGGTCCTTTGGA	ref_3746_fdr	13	14	27	15	35	27	31	11	44	19
GCGGTCCTAATTGCTT	ref_3746_fdr	51	66	73	65	85	54	96	64	77	52
GGCGTGTTCCATGGTC	ref_3746_fdr	140	192	176	155	185	131	177	127	250	140
AAATCTGGGTAAGTCC	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAATCTTGACTTG	ref_3746_fdr	60	66	51	47	76	38	74	50	81	44
TATACAGGAATCTTCG	ref_3746_fdr	4	6	3	3	5	7	5	1	11	2
CCTAATTACGGGCAAG	ref_3746_fdr	4	5	5	7	5	8	9	2	5	5
AATAGCTAGACAAGTG	ref_3746_fdr	8	8	12	5	11	8	7	1	8	5
CGAGTGCACATTCAGA	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
CCGCACATTGGTATCG	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TACTTGTTAGCCTCCC	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAAGAGGTCCTGT	ref_3746_fdr	42	54	49	35	54	22	49	35	62	36
TGTGTCCTTGTAACAG	ref_3746_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCGCATATTAGAC	ref_3746_fdr	36	44	42	35	49	33	35	25	48	34
TTTCTATTGTCAGTGC	ref_3746_fdr	53	55	60	33	67	44	67	44	58	40
CGTATTTGGGACTCGC	ref_3746_fdr	2	8	4	4	11	3	5	5	8	2
CGCTCACCGCCTCATA	ref_3746_fdr	10	20	15	9	24	8	13	12	17	4
TCTCCTTCCAACCGCT	alt_6111_new	22	44	23	21	56	26	56	14	38	16
GCGCACTTCATTGCCA	alt_6111_new	1	0	0	0	0	0	2	0	2	4
TCTTCCAGTTCGAATG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TAGGAATTAACTCAAA	alt_6111_new	12	32	27	22	39	17	45	17	35	15
CGTGGTTGTTTTTTTG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TAAGGTTCTTACATCG	alt_6111_new	9	14	7	1	12	4	14	6	15	2
AATATACCTTGGTTCT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
ATCATCGCCTGGACTT	alt_6111_new	20	60	30	25	67	23	77	26	70	36
CATGCTCGTATAAGTG	alt_6111_new	15	31	7	10	21	13	18	13	20	5
CGCCTCCTTCGTTACG	ref_6111_new	83	102	74	70	127	47	101	60	104	60
CAGCCGAAAGGGGAGG	alt_6111_new	6	33	5	9	37	11	29	10	39	16
TCCGAGTTGTTGGCCA	alt_6111_new	25	32	25	12	31	21	25	18	43	14
CATCTTCTCTGCTTTC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
ACGCAGCGCGACACGG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CGACTCAATCGAAAAA	alt_6111_new	11	13	7	10	19	9	26	13	18	13
CCTACCACTTGCTGTT	alt_6111_new	2	25	10	8	22	9	35	9	37	7
AATAATGTATTGTTTC	alt_6111_new	19	28	28	25	43	11	36	18	31	17
GTACGGACAGACGTCC	alt_6111_new	24	43	20	25	34	16	41	17	41	16
TATAATTAATGTGCCA	alt_6111_new	2	11	7	4	6	4	8	1	11	5
GCCGCGATCCCCCTTA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CTTTTATGTTACGGAT	alt_6111_new	3	8	3	6	7	1	10	2	7	1
ACTTTGCTCATATTTT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CCCATAATTGAAAACC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
AAATGTTGCGGCAATT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TGAACAAGTGAAGGCG	alt_6111_new	34	65	31	22	93	33	67	43	81	37
CAAGTCGACACGATCG	alt_6111_new	64	119	73	60	116	55	108	62	128	40
ATCCAGGTTTTTCTAT	alt_6111_new	21	33	17	21	32	12	31	17	32	7
CCGTCGGTCCTACATT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TTGATTAGGTTCACAC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
ATTGCATGTATCTGAA	alt_6111_new	21	36	21	21	25	12	50	8	41	16
TTCCCCTCTCCCTACA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GAAACTTTGCTATCGG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GTCGTCGTGTAATTTC	alt_6111_new	13	28	14	8	30	8	19	7	32	14
TTGTTACGGCCATGAA	alt_6111_new	6	5	8	5	12	6	11	4	11	4
CAAAGCTTTCGTCCGA	alt_6111_new	3	5	6	3	7	5	10	8	3	1
ATCTAGGATGCGGCAG	alt_6111_new	15	33	17	11	26	13	23	11	40	17
CGTGACGGGTTCACTT	alt_6111_new	13	16	10	4	16	5	13	4	10	7
TCGTACCCGAGATTGG	alt_6111_new	3	4	1	3	2	1	7	0	4	2
CTAGTGTTAGGTATGG	alt_6111_new	7	14	8	9	12	5	18	8	13	8
CTCCCCGGACCGTTGC	alt_6111_new	0	1	2	0	2	1	2	0	6	3
GTTTACGCCTTGGAAG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TGACCTCAACTTGTTT	alt_6111_new	7	18	7	6	13	4	16	7	12	2
GGTGCACCAGCGTGCG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CGTTCACTGTCTTAAG	alt_6111_new	4	16	5	5	13	7	16	7	14	4
TCTTATGAAACAGGTC	alt_6111_new	1	8	2	2	6	1	3	0	6	3
CTACCATCCCTTTACA	alt_6111_new	5	11	1	3	10	2	4	4	7	6
CGTCCGTTTTTTCTAA	alt_6111_new	36	73	43	27	90	35	66	36	112	31
ATTGACGTGGACCTTC	alt_6111_new	4	2	2	3	3	1	14	2	7	2
CGTCGCTCTTCCGCCG	alt_6111_new	1	3	5	1	1	1	0	1	1	2
GTTAAGGTCTATCGCT	ref_6111_new	8	26	15	8	18	6	23	6	23	3
GTCGCAATATGTTCCG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TCGCTTTGGTTCCAGC	alt_6111_new	6	8	7	12	12	12	10	14	15	5
CCGCGCATTTAAACAG	alt_6111_new	19	40	39	11	43	15	55	30	49	22
GATGATCGTTATTCAA	alt_6111_new	26	27	18	6	38	13	30	19	26	8
GTTCAGTGTTAGGCCG	alt_6111_new	21	32	17	17	45	16	32	24	35	18
TATTCATTACTTTAAT	alt_6111_new	2	0	2	0	1	1	0	1	2	1
GTCTCACTGTATTACG	alt_6111_new	7	6	5	2	10	0	4	3	5	3
TAAATGTGTCCTCTTA	alt_6111_new	8	55	5	6	84	7	78	1	59	4
ATTAAGGCCATTGATT	alt_6111_new	25	62	46	31	63	22	65	30	54	31
TTCCACTTGGGCTTCC	alt_6111_new	11	20	5	13	28	10	16	8	22	5
ACCATGAAACACGCCC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TCTTTGGTTATGATCT	alt_6111_new	7	8	3	6	4	6	13	11	10	5
TTACAAGTGGCGTGAG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TTTATCCTGAAAGGCA	alt_6111_new	5	20	10	8	23	0	22	10	20	14
TCCGTACTAGGGCGAG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
ATCTTCTTAGGCTGTG	alt_6111_new	14	33	12	10	24	11	15	9	27	11
GAAATTTCGCTTTAAA	alt_6111_new	25	51	32	31	54	22	58	26	55	22
CAGCACTAAAAGGGCG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TTAAACCGTGTGTAAC	alt_6111_new	28	42	39	30	46	12	52	29	62	33
AGCAGGCATTATACAC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GGAGTGGAGGTGGGCT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GCGGTGGTTTGGGGTG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
AACCTAGTTTCAATAT	alt_6111_new	14	21	14	12	22	10	20	10	21	13
TGGTGAGGTTACTCTC	alt_6111_new	12	28	5	10	21	10	21	10	28	7
AACCGTGCAGCCAATA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GTACGTGTTTCGCGGG	alt_6111_new	2	3	3	3	5	1	4	1	4	1
TGTTTGCGTGATGCGG	alt_6111_new	6	7	2	3	5	2	13	4	8	1
ATTTAGGCTTTTTAGT	alt_6111_new	5	13	0	8	8	4	13	6	8	2
CGCTCATTTAGGCAGC	alt_6111_new	11	20	6	13	24	10	24	7	23	13
CGGACAGACCTTCCCG	alt_6111_new	2	15	5	4	8	4	11	6	14	2
CCATATCTCACCCCAA	alt_6111_new	39	109	64	52	132	41	117	38	110	51
CGCTCGGGTTCCCAAG	alt_6111_new	52	127	60	47	94	46	79	38	89	45
ATTAGGACTCTATACC	alt_6111_new	14	28	11	13	32	16	27	12	33	17
AATGTTTGTTCGGCGA	alt_6111_new	9	24	14	12	35	8	37	14	24	4
CAACTGCTGACTCTGC	alt_6111_new	3	1	1	1	0	0	0	0	2	1
ATGCTTTTAAACTGCA	alt_6111_new	3	14	12	6	15	2	19	4	19	7
CTTAAGCTTGGTTTAG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TATGTTCTAATTCGGT	alt_6111_new	51	87	53	56	101	57	118	40	89	38
TGGATATAGATCACAG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CATTTCGTCTCCGCGC	alt_6111_new	9	22	2	5	21	7	25	1	31	1
CTAACCTACTTTGCCG	alt_6111_new	34	100	29	20	112	30	94	32	111	24
TGTAGCATGGGTCCCC	alt_6111_new	2	16	14	3	12	5	7	0	14	5
CTACAATCCCTTTACA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
AGCCCGATTTCATGGG	alt_6111_new	2	8	3	5	11	5	6	1	12	3
CAAATTGTTTTTACAG	alt_6111_new	0	0	0	0	0	0	2	0	1	0
GACCGTTCCCAAAGCC	alt_6111_new	35	115	69	55	118	45	136	63	125	36
TCAGTTATATTCCGGT	alt_6111_new	1	3	3	0	3	5	5	3	5	1
TTTCGATATTCACGAG	alt_6111_new	34	52	29	13	54	17	51	13	57	18
TCTGGAGCTGGTTCTC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CACTTAACTGCCCTTT	alt_6111_new	3	7	11	7	14	12	8	4	9	5
TATAGCATCTGTTAAT	alt_6111_new	9	26	7	14	30	8	21	10	16	6
GGCTGCCCTATGTTAG	alt_6111_new	10	7	7	9	7	6	17	4	17	2
GTCCAGTCAATTTGTC	alt_6111_new	28	57	39	32	49	14	62	32	58	28
GACGAGTGACAGATAC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CTTCTGTTATGCGGCT	alt_6111_new	7	11	8	3	16	9	17	3	11	4
GATGTTAATTTTTTAT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GGCTCACGATTAGTCG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GGTTCTCCCGACTGAG	alt_6111_new	32	52	21	23	36	24	60	15	74	18
GGGGCGGTATCATTTG	alt_6111_new	0	1	0	3	3	0	2	0	6	1
TTGGGTGATTAAATCG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GCGCTCTCGAGTAGTG	alt_6111_new	10	29	9	11	34	13	21	11	16	11
GTAGGGTTTCGTAGCC	alt_6111_new	17	18	15	11	20	9	25	19	24	10
CTCCCGCTCCATGCTG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
AATCCGGCCTTAGCAA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TACCAGGGATTGCCTC	alt_6111_new	37	46	62	48	54	63	59	62	66	48
TGCCTGGCAGTGAGTA	alt_6111_new	24	86	56	42	91	34	93	35	67	34
ACAACGTACCTACGTA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TGGGTTAGCTGTTCTC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TATTGTCAATCAGCCG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CGCAATGCGCTAGCGC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
AGGCGCCGTCTCGGAG	ref_6111_new	18	31	21	20	31	17	42	11	26	16
TCTACGGGCCTTGCGC	alt_6111_new	11	29	15	5	27	6	37	12	28	9
TTAATATGCGGCGCTT	ref_6111_new	9	20	16	8	34	10	26	14	21	9
GCAATGCTGGTTCGTC	alt_6111_new	15	41	30	25	35	14	45	13	33	15
TACTATCTCCAATCAT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GGACGTTGGAAGGTGC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CATCAGTCGTGGTGCC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GCGCTGCGCCTTATCT	alt_6111_new	14	38	14	13	31	9	28	7	44	7
CTTTGGCGCCGCTCTC	alt_6111_new	34	56	20	22	56	25	61	13	37	18
GTATTACTAAGTGTCA	alt_6111_new	0	2	2	3	6	1	7	5	2	1
TAAACTTCTCGGGCCC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GTCTTAGTGCAAACGT	alt_6111_new	16	20	8	10	29	9	24	9	15	7
AGTACTATGCCTTTCG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TGTATGTTCGTGAACG	alt_6111_new	5	12	3	1	12	7	9	3	8	3
CATACAACTGGCCGAA	alt_6111_new	9	21	5	9	16	6	13	7	17	5
ATCCAGGGGATGTGCA	alt_6111_new	12	25	14	8	19	6	22	12	27	13
TATATACTAAACTTTC	alt_6111_new	6	11	12	12	26	6	18	9	14	4
GCTTTACCGAAACTCA	alt_6111_new	33	44	33	23	44	31	52	23	57	18
TTATCGAAGTACTTGA	alt_6111_new	5	10	8	4	10	4	12	2	20	3
GGCAGTCTTCATGTTA	ref_6111_new	2	1	0	5	2	0	1	0	1	0
GGATCCGTTCACATTG	alt_6111_new	5	5	5	5	7	4	13	5	9	3
TGCTTATGTCTGGGTT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CTTAGACGGGCCGCAC	alt_6111_new	13	49	20	11	43	12	24	9	39	8
AGATTGTGCCGGACCT	alt_6111_new	8	6	10	7	9	3	10	4	8	2
CCTTAGCGTCTAAGCC	alt_6111_new	9	35	10	10	35	10	37	6	33	4
TCGTCATGACCTCATC	alt_6111_new	17	33	42	25	22	16	37	23	37	20
CGGGTGATTATACTTC	alt_6111_new	14	32	14	18	38	12	45	14	27	9
CGTCGTCGGTTCCGTT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TCTGTCCGTATTTCAG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TTCTTTAAGTTATTAA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
ATTTATATTATGTACG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GAGAACTTAGTCGACA	alt_6111_new	30	51	28	34	63	16	43	23	60	15
CTTGCGAGTCAATGGG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
CTTGCGAGTCAATACG	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TTGATTGTGGTTTCGT	alt_6111_new	21	36	24	17	49	25	51	10	46	22
ACATATCTTTGGTCTG	alt_6111_new	2	6	1	3	9	4	5	9	6	6
ACGTCTTTCGCGATTC	alt_6111_new	5	4	3	2	13	4	4	0	4	2
TTCTCCATGGACGCAT	alt_6111_new	7	8	6	6	18	6	14	4	12	9
TGGTACTTTACACCAT	alt_6111_new	6	7	6	3	14	13	17	2	10	6
AGGTCTTCATGGGTGT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GACTACTTGTCCGTGC	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GCTCTCGCTTTGTCTT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GGCCTTTGCCAATATT	alt_6111_new	0	0	0	0	0	0	0	0	0	0
GGTCTATGTTTACAAT	alt_6111_new	3	9	2	1	9	1	7	6	8	7
TATGTATTTATGCCCA	alt_6111_new	3	12	17	14	11	4	13	4	11	2
ATCAGTCCTGGCGCCA	alt_6111_new	0	0	0	0	0	0	0	0	0	0
TCGTCCTACGCAGTAT	alt_6111_new	12	20	14	11	21	11	19	5	16	7
GTTGGCACCTGGAGTT	alt_6111_new	8	19	7	11	16	4	14	7	20	1
AGTCTGCCCAGGCGAT	alt_6111_new	19	61	32	24	55	22	53	30	62	22
TAGAAGAGCGCGCGTT	alt_5965_new	17	14	18	16	13	18	13	13	18	7
TTATGGGTACGCCATG	alt_5965_new	52	66	76	62	78	49	71	41	76	41
TGGGTTCATTCTATTT	alt_5965_new	5	6	10	4	15	12	5	5	5	6
TGCTACACGATTTGGG	alt_5965_new	8	6	16	13	10	7	19	4	9	4
CATGATACATCTGGCG	alt_5965_new	104	120	113	121	111	100	123	83	156	89
CTGCCGACGAGCGCTA	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TAGGAGTCGAACTGGC	alt_5965_new	0	1	1	1	2	0	2	1	3	1
ATTTGATGTAGGGGTC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
CACTTTTCTGCTACTC	alt_5965_new	3	9	3	1	2	3	12	4	5	2
TGTGAAAATGCGTAAT	alt_5965_new	17	23	29	23	21	15	17	20	13	10
CTACTTTTTAGCTAAA	alt_5965_new	49	57	49	39	49	62	66	61	72	51
GGAGATTCGTTATGTT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
CCTTTGCTGAGATTAA	alt_5965_new	5	16	9	5	6	1	8	10	7	8
AAAACCCCACACGTGG	alt_5965_new	16	26	29	29	23	21	28	18	23	23
AATTTTAAGGCCAAGA	alt_5965_new	55	68	48	47	49	49	56	41	70	49
GTTCCGTTGGTTACAA	alt_5965_new	44	53	31	30	44	28	64	46	49	25
TGACAGTTATTCCATT	alt_5965_new	16	30	21	21	18	11	39	17	30	22
TGTCGAAGATTTCCTC	alt_5965_new	38	53	55	37	62	31	68	43	58	29
GGGTAATATTATAAAC	alt_5965_new	24	18	23	15	44	17	25	21	30	23
TCGGGGAGTTGCCAGG	alt_5965_new	98	103	121	107	109	106	115	89	114	91
TAAACTCGCGTACGGT	alt_5965_new	14	13	5	14	11	9	12	15	10	4
TATCATCTACAATATG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ACGTCTAGGTGTCTTC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TTATCGAACTCAGTGG	alt_5965_new	141	223	196	178	189	145	210	143	197	131
GTGAGCAATCCCGTAT	alt_5965_new	6	7	8	6	6	7	9	7	8	14
TTGTTCCTCGGCACCC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
AGTCTCGGCCCCATTT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ATTATCTGGTAATTAT	alt_5965_new	19	11	22	16	18	15	11	11	10	16
GCAATCCGTGGCGGAC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TTGACGCCGTAATTAA	alt_5965_new	10	11	9	14	9	11	10	10	11	4
TAAAGCACTCGCTAGA	alt_5965_new	12	11	7	5	16	6	15	12	14	11
ATGGCAGCAACTGAAC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
CCTCTGGGCAGGTTGT	alt_5965_new	37	33	40	36	46	24	45	33	43	18
TATCTCGAAATTAGGA	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TACCACAAAAGGGGTT	alt_5965_new	6	15	7	8	11	3	3	3	11	3
ATGCGACTCGTGTCTT	alt_5965_new	22	29	28	11	23	24	22	13	17	21
TCGCGACCAATCATTC	alt_5965_new	0	0	1	1	3	0	6	1	3	1
GAATTGTCAGTACATC	alt_5965_new	48	53	42	28	48	31	33	33	50	26
CCCCGTTTGTTAGCTC	alt_5965_new	5	11	8	5	13	6	15	4	16	7
TTGCGAACTTTGTGAC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
AAGGTGCGGCGGAATG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
CCTCATTAAGCTATCT	alt_5965_new	8	10	10	5	10	5	18	9	11	5
ATCGACATCACATGCG	alt_5965_new	6	17	7	12	13	15	12	5	17	11
AGTGGTGGGTCTATAA	alt_5965_new	23	34	18	28	31	18	34	22	35	32
CATCATACTTTTTAGG	alt_5965_new	56	69	67	53	87	56	66	44	71	46
TTGTCTTCCTCGTCAG	alt_5965_new	7	9	7	13	10	10	17	11	14	7
TGACCTATTTTAAGAT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
CTTGTATGTTGTCATC	alt_5965_new	34	52	60	31	44	38	45	38	51	27
GTTAGAGCTTTTTGGT	alt_5965_new	12	13	23	14	21	14	22	7	21	12
CTAAGGGCCTTCTGTC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
AGCCACTCCGATAGGT	alt_5965_new	12	24	13	11	20	10	21	5	27	6
AATGCCAAAGGTTTTT	alt_5965_new	11	12	8	7	20	11	11	13	16	11
GATGGGCCCGCACACG	alt_5965_new	6	4	10	12	6	7	7	4	4	5
CTCGTGATGACTCGCA	alt_5965_new	30	23	33	16	33	20	47	31	39	13
ATTAACGGACTAGCGC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TTAATAAGTTACTGTC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
AATTGCTATAATACGT	alt_5965_new	49	63	55	52	58	47	70	47	64	41
TGGCCTTAAGCCCGGT	alt_5965_new	26	42	29	22	36	18	30	22	40	24
TCGCCGCGGCCCGCGC	alt_5965_new	9	21	22	10	9	16	25	6	14	8
ACGTTGTGAAAGTCCC	alt_5965_new	8	10	11	8	7	9	10	4	11	3
CCCCGAATTCGTCGGT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ATCGTAGTGTGTATAC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ATAATTTTTGATCTTT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TCAGTACTTTCGTTCT	alt_5965_new	34	56	57	27	57	39	68	47	62	49
TTCGCCTGTGTACCAA	alt_5965_new	18	21	32	22	18	20	30	25	26	22
GGCTTATGTAAATATG	alt_5965_new	15	19	26	18	22	33	18	23	20	18
TTTAAAGTTGACACAG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GTACAGATTGCGCCGT	alt_5965_new	18	35	23	26	32	16	19	20	29	20
CTAGGCCGTTGAGGTA	alt_5965_new	91	122	120	83	123	78	114	89	115	75
CACTGCTGCCAGATTC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
AGTGACCGTCCATTCT	alt_5965_new	42	50	41	61	57	32	68	37	72	45
CTTTCATAGGACAACG	alt_5965_new	49	58	33	37	63	56	73	45	61	49
ACGTTCGTAGTATAAT	alt_5965_new	12	20	25	14	22	15	24	11	27	17
GCAGTCGCCCGCGGCC	alt_5965_new	0	3	2	1	3	3	2	0	1	1
ATCTCTGCAATGAGCA	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GTCGTTGCCATTATAC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ATAATGTAAGTTATTA	alt_5965_new	19	21	15	10	29	7	23	12	17	14
GTATATAGAGATCAGA	alt_5965_new	41	60	36	41	57	36	59	40	57	31
GAATGCCTTACTGTAG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TGCGAATGAGCCGGGC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GACAAATTGTAATTCG	alt_5965_new	7	8	9	3	16	2	12	13	16	7
TTAACATTTCCCCGAT	alt_5965_new	26	49	24	31	49	29	60	35	51	30
GCCCGCCCGTAGAACC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
CCCAATGTCTAAAACT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GGTCACGAGTCTGTTA	alt_5965_new	25	42	46	34	43	29	42	36	33	33
TAATGGCCGATTGTTA	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GTTGTCGATCCCTCCG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TGTGTTGTTTACATAT	alt_5965_new	1	9	2	2	5	2	11	2	12	2
TGCGAAAGATGGCGTC	alt_5965_new	26	19	26	30	17	33	24	19	18	19
CCTGCCTTGCCTTTGT	alt_5965_new	26	19	30	29	15	30	28	21	18	15
ACGCGGGCTATTACTG	alt_5965_new	1	0	2	4	2	1	0	0	0	1
CCGCCATTTCTCTACC	alt_5965_new	2	3	4	0	5	0	7	0	6	1
AGTAGCATGTAATTGG	alt_5965_new	35	49	59	47	39	47	50	37	32	39
GGCATGATCGTACATT	alt_5965_new	30	37	41	31	41	26	55	36	61	23
ACATCTGGTAGTGGAA	alt_5965_new	6	5	7	1	2	4	9	4	2	4
GAACTGTACTCGGCTC	alt_5965_new	22	35	38	31	26	23	40	18	42	25
CTTCGCTCGTTCGCTT	alt_5965_new	17	23	13	26	25	10	23	20	25	14
GTGTAGTCCCCCCGTT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GACAGGGCCACTCAAT	alt_5965_new	91	98	89	73	115	75	107	77	126	63
AACGTAAACTTTGCCA	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ATTAGCCAGTTATGTA	alt_5965_new	15	17	20	13	19	12	25	16	20	12
CTAGCAGGCCTATCCA	alt_5965_new	12	10	16	7	9	3	14	10	15	10
GGGCTGTAGAGTTGAC	alt_5965_new	8	26	24	13	29	15	22	13	22	15
GGAACAATGTCTGTTA	alt_5965_new	0	1	1	1	3	1	0	4	1	1
AACTCGCTTAGGACTG	alt_5965_new	11	14	7	10	13	7	14	8	17	9
CATCTCTGACTACCAT	alt_5965_new	25	26	27	33	23	18	32	21	19	23
GGATGCGCATAGATCC	alt_5965_new	11	12	16	16	13	15	19	7	27	6
ACCAGGCCCGACATTT	alt_5965_new	4	11	6	11	13	7	6	8	14	5
GAAAACTGGGTCTTTC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
AATTTGCCGGCCAATG	alt_5965_new	21	40	24	14	30	13	32	19	43	24
TTCTAAATGAGCAGGA	alt_5965_new	53	58	85	73	60	43	63	46	78	52
TGCATTTCTAGAACAG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TTAGATCTATAGATCT	alt_5965_new	62	76	66	54	78	46	88	71	88	51
TTGAGTTCTATAATTT	alt_5965_new	1	4	5	0	1	4	3	0	2	2
GAAGCCGTCGACGAAT	alt_5965_new	74	93	85	106	78	71	95	55	95	55
GTTGCATGATTGTTCT	alt_5965_new	3	10	10	9	11	4	9	6	12	3
ATTCGCCAAGTTACTG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GGGTATTTGGTTAAAT	alt_5965_new	42	41	41	51	41	30	48	32	55	45
CGCAGTTAAGGCTTTT	alt_5965_new	26	27	15	18	24	16	27	16	39	18
TGCTGCATTATTCCTC	alt_5965_new	13	23	14	20	18	12	23	11	24	7
CTTAGGACGTTCGCCA	alt_5965_new	3	6	8	6	11	10	6	9	5	9
TACCAGGGGCTGGATA	alt_5965_new	0	0	0	0	0	0	0	0	0	0
TTGCACCGCCTCGAAA	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ATGTCAACTGAATTTG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GAATAGGATTTCCGGT	alt_5965_new	5	6	6	5	10	9	6	6	10	9
GCTTGTTGTAAATTGT	alt_5965_new	4	18	11	10	15	5	12	6	15	2
GTCTCTCTGCTGCTTT	alt_5965_new	0	0	0	0	0	0	0	0	0	0
CCACTGTTCCGATAGA	alt_5965_new	24	34	24	23	42	15	33	20	33	26
ACGTGTGCTGCTCGAG	alt_5965_new	6	18	8	6	14	5	13	7	11	7
CAAACCGACACGATTG	alt_5965_new	0	0	0	0	0	0	0	0	0	0
GGTCGCGTGAGAGTAT	alt_5965_new	16	27	6	9	27	14	29	12	23	7
CAATCTGTGCATAACA	alt_5965_new	6	17	15	14	12	11	12	9	19	10
TTTGGGATAATATATC	alt_5965_new	0	0	0	0	0	0	0	0	0	0
ACAACATTGTTTCTAA	alt_5965_new	19	21	17	21	11	27	14	18	17	16
CGATTTAACACCGTGC	ref_4832_fdr	84	47	131	92	63	78	69	105	71	84
TGCATTCGTCGTTATC	ref_4832_fdr	50	17	38	49	13	32	29	28	22	38
CTCGTGGCTTAATCTT	ref_4832_fdr	62	22	60	42	24	46	25	38	24	33
TCAACTGCTGTAGAAT	ref_4832_fdr	23	19	23	27	10	21	7	14	21	19
CGCAGTTGTCATTGCT	alt_4832_fdr	152	175	146	144	175	119	147	148	189	120
CACTTACAACGTCAGG	ref_4832_fdr	86	50	120	99	63	93	46	91	64	79
GACCTATAGACTCACC	ref_4832_fdr	3	57	9	9	59	4	73	11	67	8
ACCGGTAGGCGTGTTT	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
CTATTAAAAAGGGGTT	ref_4832_fdr	200	123	220	209	97	210	122	211	133	187
CCCGTTCACGACCTCA	ref_4832_fdr	26	18	28	43	22	23	17	23	21	32
CTCGCGAGAGGACTTG	ref_4832_fdr	17	8	27	19	13	28	9	12	9	16
TCACCGGACTCTAGAA	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
TAGACTCTTGGAGTAG	ref_4832_fdr	18	16	14	18	12	16	11	9	14	9
CATTGTAGGGGAAAGA	ref_4832_fdr	46	33	60	47	25	47	23	40	34	46
GGTATATTAACAATTT	ref_4832_fdr	57	39	61	64	47	68	36	70	35	64
GAACGAGTTGCATGTT	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCCGGCTTTCTCG	ref_4832_fdr	173	88	189	164	80	154	94	123	102	138
GTTCTTCATCCTAGTT	ref_4832_fdr	32	27	44	30	22	37	22	25	23	23
GAAGTAGCGGCCCTTA	ref_4832_fdr	60	37	72	58	29	43	24	64	26	55
GGTGGATGCCGAGCAG	ref_4832_fdr	91	59	127	120	62	120	62	103	51	97
GTAGACCCACTTTAGT	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCCATCCTGTCTG	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTAGTATCTCGCC	ref_4832_fdr	22	39	26	27	34	11	32	29	37	20
GCAGGCTTCATTGGTG	ref_4832_fdr	44	33	48	35	21	45	20	46	32	41
TCGGCGCGATTATTCG	ref_4832_fdr	36	11	55	41	13	26	16	35	23	28
TCTTTCTCCACCTAGC	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
CACACGGTCAGTGAAC	ref_4832_fdr	94	93	129	95	67	89	92	96	95	74
GAGTGTCTCAATGCTA	ref_4832_fdr	19	14	37	26	16	20	25	25	14	19
CCCAGATTTTACTTAA	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGCGCGAAACAAG	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
TATTGACGCGATCTTT	ref_4832_fdr	115	40	101	94	50	101	75	88	58	77
GCCTCTGGTACCTAAT	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAAATAAAAGGTC	ref_4832_fdr	34	19	38	34	16	35	16	42	27	26
GCTTCCCGAGGTCCCA	ref_4832_fdr	440	232	520	406	229	424	245	411	278	365
TTAGCCCCGCAAACGA	ref_4832_fdr	242	121	280	286	165	244	119	208	134	220
CCTACCTTCTTCGCGC	ref_4832_fdr	176	118	194	175	103	141	98	135	125	131
GATATCCCCGGTACCG	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCTGATTAGGAGA	ref_4832_fdr	89	51	101	78	49	79	51	59	52	70
TTCCGTAATATTATTT	ref_4832_fdr	98	36	94	100	60	90	53	78	51	75
GTTTAACAGTCTGTAC	ref_4832_fdr	8	3	12	7	4	9	5	6	8	4
GGTCCGTGTCACTTGG	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
CTGAAACTTCGGAATT	ref_4832_fdr	65	47	97	68	50	71	31	66	45	80
CAGTAGTCTTATGTGG	ref_4832_fdr	60	40	58	63	34	50	28	55	47	49
ACTATTCGTTCCAGGG	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCGTATCTTTGGA	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCCTTGGTATATC	ref_4832_fdr	82	54	91	71	65	74	63	71	58	62
TCTGGTCGGCTCGTAG	ref_4832_fdr	4	4	3	7	3	2	2	1	0	3
TGGCCTCCGAGTTGAT	ref_4832_fdr	7	1	5	4	2	3	0	4	2	8
GCAACGGATAACTGCA	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAAAATTATGTTG	alt_4832_fdr	35	43	44	37	43	36	58	50	60	27
TGCTGTTATACGGCGA	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
CGCGATAACAAGAGTC	ref_4832_fdr	10	7	16	16	5	10	8	11	3	4
TGCTATACTTGATATT	alt_4832_fdr	125	135	129	108	150	97	159	112	128	99
AGGCGACCAATCCGTC	ref_4832_fdr	13	0	12	10	8	10	5	13	9	11
TTCTCGATATTAAAAT	ref_4832_fdr	319	186	397	289	184	296	204	279	190	281
TCTAAATACTTGGCGG	alt_4832_fdr	13	15	18	17	20	10	18	7	21	14
AATTTACGTTCAGCTT	ref_4832_fdr	201	112	269	200	110	187	117	190	133	190
CTGATTTGCCTGCCCC	ref_4832_fdr	37	57	37	45	45	30	69	31	71	41
GAGTCGGATTAGCTGA	ref_4832_fdr	26	16	33	33	8	22	8	19	17	18
TTGTCGTTAACTCCAC	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTCTTGTTTGTG	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCCTGCCCGTCGT	ref_4832_fdr	65	46	64	78	29	64	47	41	37	58
CGCCTGGATTTCATAT	ref_4832_fdr	51	59	68	63	65	75	55	49	55	52
CAATTCGCACATCTAG	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
CGGTGGACCCCCACGT	ref_4832_fdr	107	48	166	122	66	127	67	119	56	90
GCTCAATGGTGGTCCA	ref_4832_fdr	52	46	73	63	32	69	36	77	25	46
TACGGTGCGGGAACCG	ref_4832_fdr	76	58	110	103	41	85	59	72	65	88
TAATGTTATAGGCTAC	ref_4832_fdr	0	0	0	0	0	0	0	0	0	0
AATCCTGTCTCTGCTG	ref_4832_fdr	26	24	36	46	30	32	28	27	15	35
GTAGCTTCATAGCAAT	ref_4832_fdr	11	5	18	15	4	7	3	11	1	9
GGTTCGTACATCCGCT	ref_4832_fdr	353	192	361	369	181	330	192	328	210	288
GACGATTTTAGCCGAG	ref_4832_fdr	79	52	86	70	62	84	62	56	59	83
TTTTCATGTCTATGAA	ref_5694_new	3	13	8	8	9	3	10	4	13	14
GTGTCGTCGCACCTGC	ref_5694_new	9	26	11	9	20	9	32	15	24	15
ATGTGTAGTTTATGCT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CCCTGGAATACGATAT	ref_5694_new	10	22	15	18	36	14	38	17	33	11
GGGTGCAGGAAAGAAT	ref_5694_new	37	100	35	36	80	30	99	29	99	42
CACAGGTGTATTTCGT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TCGCTCATTTCATCCG	ref_5694_new	18	35	26	25	47	20	42	17	50	31
TTCATATGGGGAAATG	ref_5694_new	42	69	62	35	75	41	84	48	65	37
TCCAAGCTGCAATTGA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TCGCATGCGTGTATAC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
GGCATAACCCAATGCG	ref_5694_new	108	123	91	76	120	78	144	67	132	44
TTACGCCCCCGCGCTG	ref_5694_new	29	44	46	36	59	28	41	23	51	18
ATGACGTGTCAGCAGG	ref_5694_new	9	11	11	6	12	15	9	11	15	8
CCACGTTCGTTCGATG	ref_5694_new	37	68	48	41	70	35	95	53	72	38
CATTTACTTGTCACTC	ref_5694_new	5	4	5	3	3	1	3	1	3	2
AGTACGCGGCTAGTTT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TGGGGAGTTCTTCCTG	ref_5694_new	66	120	103	82	98	80	118	74	99	41
GAATCAGGCAACACCC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TCGTTTGTGTACTGTG	ref_5694_new	4	1	3	3	10	1	4	3	4	2
GCATTCTCTATATGGT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TTTTGGGTCTTCCTGA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
GCTGTCATGGAGAAGA	ref_5694_new	44	40	40	25	41	32	50	37	65	35
ATTTTATCTCCGTTTC	ref_5694_new	39	41	55	44	47	30	65	44	45	31
GTATTATCAGTGTCAG	alt_5694_new	17	35	24	21	40	19	29	23	48	15
TATTTGGACTTCCACC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CCATGCATGGGCATCG	ref_5694_new	56	91	80	49	95	60	111	53	90	46
AGGAGCCCGGTTCCTC	ref_5694_new	5	4	5	3	5	3	1	0	5	2
CTAGGAATCACAGTGA	ref_5694_new	22	63	23	36	61	27	60	25	71	22
CCGGCTCCTCGCCTGG	ref_5694_new	19	44	22	20	53	22	51	15	59	16
TCGCCCAAATTTCACA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CTCTTGACTACAGTTG	ref_5694_new	38	76	48	54	91	40	86	30	97	25
TCCCTTGGTGTGCATC	ref_5694_new	35	65	39	43	60	26	58	41	71	35
ACTTAGCTCTATGGGA	ref_5694_new	64	97	39	68	126	78	129	66	120	54
TTACCATGCGGGACTA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
GTAGTTCCGGCCGCCC	ref_5694_new	82	85	85	77	117	60	102	58	112	77
CTTGACCTCGGTATAA	ref_5694_new	2	2	2	3	3	0	3	3	2	2
GACCTGACATGTGTTG	ref_5694_new	26	24	25	9	33	17	32	17	28	14
ATTCTGTGGTTTGGCT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TTTCCCCCTGAATATA	ref_5694_new	7	18	19	14	16	17	20	11	32	16
TTGCTTAAAGGGTACA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
ACTGAACCTTTAGAAT	ref_5694_new	104	184	118	90	170	109	193	115	172	80
ACTTGCTTTGCAACCT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TTCGTCAATCGAATTA	ref_5694_new	20	31	18	19	24	21	27	15	30	17
ATTGCCATTGGGTATT	ref_5694_new	22	43	25	19	57	21	38	17	53	24
GTTTAGTTTTAAAATA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CTGCTGAGTCCAATCA	ref_5694_new	33	45	27	19	35	18	47	29	42	27
GATGAAGTTTGTTTAT	ref_5694_new	43	82	57	42	85	50	78	39	76	43
GTATGCGCCAATTGCC	ref_5694_new	25	36	20	16	27	18	38	17	39	22
TCTTGGTGTATGGCTC	ref_5694_new	18	54	38	41	61	34	53	25	66	29
CTCGTTTCTAACAAAT	ref_5694_new	64	75	43	59	87	64	104	53	115	59
GTCTTACTGTTGCTGC	ref_5694_new	2	8	5	2	11	7	7	6	15	9
GTGATGAACAGCTAGT	alt_5694_new	23	25	16	13	35	15	20	12	33	16
AGCGTTCCGATAAACC	ref_5694_new	23	37	38	28	41	28	44	26	37	25
GGAAGATCACTTGCAG	ref_5694_new	22	44	40	26	39	28	50	24	59	20
CAGGTCATTGATCGAC	ref_5694_new	5	3	7	3	4	4	4	2	1	5
TCGCTCCATTTCTGTT	ref_5694_new	363	517	413	370	532	344	571	325	565	302
AGATCTCTCGGCTCAC	ref_5694_new	149	213	160	157	192	144	231	137	203	135
GTATCTGTGCTTACTA	ref_5694_new	6	11	10	5	10	7	11	6	8	4
CCTTACCGGTTTTGTG	ref_5694_new	16	102	28	34	106	21	119	24	133	30
AGCCCTCGATCGATGT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CTATGTTACCCCTGTC	ref_5694_new	9	25	19	11	13	12	18	12	22	12
AAGTTCGAACGGCCAG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TATACTTCCAGTGCAC	ref_5694_new	217	307	218	210	341	198	354	200	337	183
GGGGACGTAGCCCCTA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
GTAGAAGAGCAGGTGT	ref_5694_new	60	113	68	64	90	54	84	53	91	54
ATTTAATTAGTTACAC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
ATCCTGCAAGGCAAAA	ref_5694_new	14	8	12	12	6	7	16	9	14	5
TTAGCGTTGCTCTTTT	alt_5694_new	1	1	1	1	3	3	0	5	4	4
TCACGTCCTGGCGCTT	ref_5694_new	6	8	14	15	10	8	15	4	8	12
GCAGCTGTTTATCGTA	ref_5694_new	8	7	8	10	11	6	18	7	14	6
ACATGTACAACGACTT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
ACTCGCCCCGCGCTTT	ref_5694_new	101	124	103	91	143	79	148	81	118	93
CCGGAAGCCATATGTA	ref_5694_new	0	6	4	2	6	0	8	0	4	0
ACCTGGTTTTTAGCCA	ref_5694_new	8	14	15	10	33	9	17	7	31	7
AGGATACCCTATTGCG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CCACTCTTGATATACA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CACTATGAACGCCAGA	ref_5694_new	34	34	32	27	42	17	44	27	38	19
ATCCCCAGACACGCGG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
ATATATGCATGCATTC	ref_5694_new	34	37	57	47	66	39	44	36	54	43
CCAATACTCTAGGACG	ref_5694_new	42	90	54	35	70	41	85	45	70	46
TCGATCGCCCTCGTTT	ref_5694_new	13	23	16	26	13	13	21	22	30	22
ACCATGATCGAAGGGG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TTTCCATGCCACGCTT	ref_5694_new	34	80	81	71	95	39	110	57	83	33
ATTAAGAGTATCTCCC	ref_5694_new	13	35	12	8	46	7	35	5	48	15
TTACTCTCAAACCGTA	ref_5694_new	2	9	8	3	4	8	8	4	2	2
TAGCGCTCATATTGCA	ref_5694_new	35	74	51	36	80	40	79	37	71	26
GCTCGAGCTCTTAAGG	ref_5694_new	20	19	10	8	12	9	21	7	15	7
ACCGCACTTTTTGTAT	ref_5694_new	14	37	19	17	40	14	20	23	24	15
CTCATGCTCCTGAATG	ref_5694_new	3	5	5	6	4	3	4	2	8	4
TCGTGTTTCCTTGGGG	ref_5694_new	34	52	37	23	52	36	59	20	49	15
CTATTGATTTATCGCG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TTGAGCTTACGTCTTA	ref_5694_new	51	102	61	56	98	50	92	47	117	52
TTATGAGTGTGCACCG	ref_5694_new	12	24	7	10	11	17	20	3	18	16
CGTCGTCTATTGTAGG	ref_5694_new	62	78	58	44	95	56	95	40	87	48
TGCCGCCTCTTTGCGC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TTCGCTTTCTTCGTGT	ref_5694_new	35	38	40	21	42	42	54	23	54	31
GAAAGGAGTGTAGGCT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
GATCCTCAACGCCTCC	ref_5694_new	23	50	26	32	37	37	43	22	66	26
CATAGTACGTTTTTGA	ref_5694_new	71	125	78	72	95	77	118	88	116	64
GGACTTCTCACCGCTT	ref_5694_new	13	18	14	6	17	13	13	11	16	6
AGGTACTTGTAATCTG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
ACCCCTCGCCTCCGAG	ref_5694_new	45	73	55	40	79	45	62	34	79	55
TTGGAGCAGGACCTCC	ref_5694_new	26	40	24	17	36	17	43	23	41	31
TAGTCGGTTGCAAACT	ref_5694_new	0	8	1	7	5	6	7	5	7	5
GGTGCGGGTATTCCGT	ref_5694_new	13	16	10	17	11	9	17	16	22	9
TGCTTCCCTATTATGC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TGAAGTTTCTCGGCAT	ref_5694_new	35	47	26	22	59	23	35	17	37	27
CACAAGTGTCTAGAGG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
ACTTGTACAACGACTT	ref_5694_new	239	381	284	240	345	239	375	201	414	215
GGCGCTGGTTGGCTTA	ref_5694_new	33	48	40	33	60	35	59	32	51	41
TTATTGCTCAATTACT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CCCTAATGCTGATGCG	ref_5694_new	8	14	12	11	23	13	25	7	22	13
GTGGCCACACTCTAAA	ref_5694_new	58	141	53	62	116	51	139	41	148	46
ACGATGTCGTTGTTCC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CCACGTCGTCCTACCC	ref_5694_new	78	110	79	60	82	62	123	59	116	57
TATCTATATCCCTTCG	ref_5694_new	0	3	2	2	2	5	2	0	2	1
TGCCGCCCAGGCTTGG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CGTCCTCTCTCGTCGG	ref_5694_new	75	151	80	67	146	54	183	61	166	72
AGATACTGCTTCGTGT	ref_5694_new	3	4	5	2	4	3	5	7	11	3
TGGTCACGATGCAGTT	ref_5694_new	12	28	8	10	19	13	20	12	13	8
GGTGTTCCTTTCTATC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
GTCACTGTCGTTCAGA	ref_5694_new	18	28	23	15	40	19	32	18	32	17
CTCGGAGTCCTGCCTG	ref_5694_new	28	39	25	21	36	28	43	18	35	24
TTAATCTCGTTGATGC	ref_5694_new	20	33	20	19	37	24	28	22	35	20
ACCATGAAATGGAACT	ref_5694_new	0	0	0	0	0	0	0	0	0	0
GATGATGACTCGCGCC	ref_5694_new	4	7	1	8	13	10	13	7	5	4
ATTAGCGTACCTAGGG	ref_5694_new	22	30	27	22	42	40	50	24	56	32
ATCTGTTAGGGGATTA	ref_5694_new	12	4	8	9	16	2	11	3	9	3
GTAATATCATCGGGAA	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CTATAGCTCGAACGTA	ref_5694_new	12	23	15	16	23	16	21	11	19	12
CCCTTAAACGATGCGC	ref_5694_new	15	23	19	8	15	10	27	13	18	10
GACTCCTATGTTACAA	ref_5694_new	40	55	47	38	60	43	59	32	57	47
TGTTATCCTAACGCCT	ref_5694_new	2	2	1	1	2	4	4	0	7	4
GCAAAACCAAAGATTT	ref_5694_new	4	17	11	4	18	2	7	9	6	11
GGTGTGTGGTGATTGT	ref_5694_new	28	85	40	26	73	16	84	27	93	25
ACAGGTCTCGCTAACT	ref_5694_new	3	3	6	5	10	1	6	1	10	4
CCCCTCTGCCCCTGTA	alt_5694_new	70	137	95	87	141	93	158	85	160	93
ATCTTCATCTTTTGTT	ref_5694_new	13	14	11	7	9	11	10	9	10	7
CATGTTCTGAAAGTAT	ref_5694_new	3	7	5	4	10	3	14	2	6	5
ACGAATCCGGCAGTTG	ref_5694_new	0	0	0	0	0	0	0	0	0	0
TGGGTATTTGGCGTGG	alt_5694_new	0	0	0	0	0	0	0	0	0	0
AAATCTCTTCTGTTGG	alt_5694_new	129	165	171	131	198	122	204	111	211	79
GCTCGGCTTTTTATGT	ref_5694_new	1	6	4	7	12	9	5	8	10	6
ATCGGTGCTTTCTAAT	ref_5694_new	26	24	22	22	41	27	36	27	23	27
TAAGATGTTGTTGTAC	ref_5694_new	0	0	0	0	0	0	0	0	0	0
CATGAGTAGGAGCATC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
GCGAATTTTGGATGGT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TATGTACACAGCCAGT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGATCTTCCAGCT	alt_5201_upstream	47	13	53	46	15	54	23	40	21	50
TCCAAGACGATCCCTT	alt_5201_upstream	56	21	63	62	15	42	26	36	20	32
TCTTGGACTCTTCTTT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCGTTCGATTTGA	alt_5201_upstream	118	53	128	120	56	94	42	101	57	70
CATTTTGAAATGCACC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TGAAAGGACGTACTTC	alt_5201_upstream	49	18	66	58	29	61	33	56	28	52
AAGATTATTCTGAAAC	alt_5201_upstream	182	112	225	233	97	136	114	188	97	160
TCCTGCACAGCTCCTT	alt_5201_upstream	75	48	72	68	52	55	73	63	49	49
GAACCAGTTTTAGCTA	alt_5201_upstream	154	71	203	177	83	192	88	137	84	150
GCTCACCGGGTGACCT	alt_5201_upstream	30	27	42	33	31	25	22	27	32	20
TCTTATTTTCAACTGC	alt_5201_upstream	9	6	15	21	1	14	11	11	7	4
TGTCCTGTGCTGTGTG	alt_5201_upstream	67	34	62	57	26	49	28	42	22	60
CTTGCCGAACATACGT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
ATCTAGGGTCTACAAC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TGATGTACACGGCGTA	alt_5201_upstream	22	24	28	12	20	14	34	18	18	15
TTCAGAGTTATATAGT	alt_5201_upstream	55	24	60	38	32	32	33	44	24	36
CTTCGGAGCCTGCACT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TATTATAGCAGGAAAG	alt_5201_upstream	191	105	240	211	98	218	119	205	129	193
CCCTTACTGACTGCGC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCCACTATTGGG	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
CTACGATTTGCGCATC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
GAGTAATCTTGTCCAC	alt_5201_upstream	53	25	64	61	28	53	29	50	27	46
TATTTTTCTTAGCCAG	alt_5201_upstream	16	8	13	17	6	20	14	12	8	9
CTTATTAGAACCCGCC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TTGAATCGTGCGGGCC	alt_5201_upstream	58	34	83	92	25	69	28	63	36	63
GACTAAAGATTTCCCT	alt_5201_upstream	134	71	160	169	56	137	59	125	82	101
CATTCCTTATTTCAAA	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTTACATTTAGTT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGTGTAACGAACT	alt_5201_upstream	0	2	2	0	1	1	0	0	0	5
CTACCTGATGGGTGCC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCGCCGTTAGGCA	alt_5201_upstream	86	57	104	94	66	106	66	100	66	89
GTGATTCCGGTACGGC	alt_5201_upstream	118	66	183	124	60	100	59	120	68	115
TTTTTTGATAATTGCC	alt_5201_upstream	187	86	239	209	113	206	80	180	99	212
ATCGGCATGGCCTGCT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTGTGCAGCTCTT	ref_5201_upstream	32	19	42	46	23	41	22	31	19	32
GTCGGCTAGCAGCGCA	alt_5201_upstream	46	20	44	51	35	48	19	47	23	35
TTACGTTTGCGGTGCG	alt_5201_upstream	12	9	19	22	9	19	13	12	8	15
TACCTCCTTTTATGTC	alt_5201_upstream	9	24	18	22	21	13	27	16	30	18
TGCTCTTTGACTAAGC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
AATGCATAGTATGACC	alt_5201_upstream	162	70	220	205	70	154	67	157	106	140
GTTTAGGTATTGATGC	alt_5201_upstream	15	9	33	37	11	20	10	31	9	22
GGAGTCTGTTTTAGAG	alt_5201_upstream	24	18	35	30	20	28	15	30	13	36
TCGACTATTAGGCATT	alt_5201_upstream	65	36	95	74	40	66	50	64	51	68
TGTACAACTTTTTGTG	alt_5201_upstream	17	14	15	14	7	21	10	18	14	18
ATGCTCGTCTTGTGTA	alt_5201_upstream	50	31	57	45	26	45	31	44	22	52
CAGTACTTTACTGCAT	alt_5201_upstream	100	60	145	116	64	110	54	121	70	77
CCGTTGTGTCCCGCGG	alt_5201_upstream	42	33	40	45	34	37	37	34	38	26
GTCCATACGCTGTTCT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TAAACTTACTTTGAGC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGCTAGCCAATCC	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TATGTGGCGCCCTAGG	ref_5201_upstream	33	19	37	32	26	20	32	19	28	26
GGTGTACATTCTGGCC	alt_5201_upstream	20	12	27	19	9	16	7	19	10	11
TCGCGTGTAGACTCGG	alt_5201_upstream	58	27	54	57	34	48	23	55	20	32
GCTGGGTCCTCTTAAG	alt_5201_upstream	47	21	33	31	16	28	8	27	18	32
TCTACCTACGCGGGCA	alt_5201_upstream	149	76	147	156	82	138	98	147	96	133
AGAGCTTTATGTGGAA	alt_5201_upstream	21	24	22	35	18	19	14	24	11	17
GATTACACATTTACTA	alt_5201_upstream	39	15	54	35	14	35	16	31	10	20
GTGTCAGCTTCTTCGA	alt_5201_upstream	45	26	39	50	22	42	26	31	27	35
CTATAAATTATGTTAA	alt_5201_upstream	127	61	132	113	57	115	57	93	49	80
GCGTACTATTTTCTAA	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
AATGCGATGTGGCGCG	alt_5201_upstream	62	33	91	65	41	69	24	65	27	51
TATGATTCAGGGAGTA	alt_5201_upstream	101	53	145	111	52	95	70	103	56	96
GTCACTCAATGGCCTG	alt_5201_upstream	11	2	14	8	5	7	6	4	1	6
AGGCTGCAGATCTTAT	alt_5201_upstream	201	99	269	246	95	224	100	215	102	184
AGCAGGTAATATCTTA	alt_5201_upstream	33	9	21	35	15	20	23	17	14	27
TGGAATCAGGCCATGT	alt_5201_upstream	6	1	7	4	5	2	1	7	1	1
GGTACACTTTACAAGT	ref_5201_upstream	41	36	47	26	49	26	54	27	45	35
AACCTATACCGTCTAG	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTTTGTTTATTGG	alt_5201_upstream	153	91	176	188	83	104	89	121	92	111
ATAAGCGACTTGCTAA	alt_5201_upstream	16	9	31	25	13	22	19	19	24	30
TCTCACCTTAGTTTAA	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
GCTAATCGTGCTTTGA	alt_5201_upstream	9	6	11	14	2	11	15	9	14	7
TTTCATGCTCTCGGTT	alt_5201_upstream	66	19	75	59	30	54	33	57	33	48
TCGTGCCCATCCTACG	alt_5201_upstream	15	5	25	29	5	11	8	9	14	16
TTCACTTAGAACGCCG	alt_5201_upstream	46	27	68	51	34	46	28	58	30	34
ATTGTTCGCTTCTATC	alt_5201_upstream	123	46	142	131	42	94	38	101	59	91
ATGACCGAGACGGCTT	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
AGACGGCTCTGTCCTA	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTATAGCTCTTA	alt_5201_upstream	85	40	126	96	37	88	47	99	42	80
GCTAGCTGACATAAAG	alt_5201_upstream	93	41	104	95	52	63	54	77	36	73
ATGTCCATTGTCCCAC	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
TATCGCGTCCAAGGTG	alt_5201_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTCGCTCATCCC	alt_5201_upstream	5	5	15	13	8	12	8	14	8	7
CCCCGTAGATACATGC	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
GAGCTATATGACTTGA	alt_4079_RC	47	67	58	44	40	41	52	31	43	43
CAGCCCGTCGGACTTG	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
AACGTGGGGCATGTCT	alt_4079_RC	73	102	86	65	104	71	103	61	110	71
TCAGCCAGCAAGACGA	alt_4079_RC	28	55	52	39	43	36	42	27	51	16
TTCACTATTCATAAAC	ref_4079_RC	164	111	208	183	102	169	116	174	135	147
CTTAGTTCCTACCCCG	alt_4079_RC	46	51	32	28	55	29	56	23	50	19
AGCGCCCCAACGACTA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
TCCCGCGAGGCACGAA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
AACCATACTTAGTTGT	alt_4079_RC	6	13	22	10	14	16	15	15	13	10
TGTTCTAGGCCCCCAT	alt_4079_RC	26	25	31	21	30	10	24	11	23	21
CTACCACGCGCTTCTC	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
CGCATGTTTGCTTTAC	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
CCATTTTTCTAATTTC	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
AGTGCGGAGGGTGGTA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
TCACGCTGCAACCGTA	alt_4079_RC	20	41	34	25	38	27	43	24	49	18
CCTAATTGCGGCTGTT	alt_4079_RC	33	25	28	23	30	18	42	16	41	15
AAACTTATGTAACCAT	alt_4079_RC	24	15	21	17	22	14	21	25	20	23
CCCTAAAGGTTATCTA	alt_4079_RC	21	30	20	14	38	31	35	10	43	11
GGTTGCCTCTGGTCAT	ref_4079_RC	25	24	32	23	32	15	26	12	21	10
ATACCACTGTATGATT	alt_4079_RC	12	7	9	5	11	5	9	5	10	6
GTTAGCTGAGGGCACA	alt_4079_RC	16	22	17	13	10	5	12	12	15	9
CATTCTGTTTACCCAG	alt_4079_RC	29	32	26	44	36	44	31	41	28	32
TTTAAATACAATATAA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
TGAGCGTGCCTCCCGC	alt_4079_RC	3	6	4	1	0	3	2	5	4	1
TAGTACTGGTGTGCCT	alt_4079_RC	9	33	10	13	31	10	33	18	31	14
TTATCAAGGAAGTAAC	alt_4079_RC	10	23	16	13	22	10	20	11	13	12
AGACGTGGTTGAAATC	alt_4079_RC	44	80	81	64	65	50	70	70	75	53
TACCGTACCGCATTCG	alt_4079_RC	3	11	6	10	14	7	10	5	15	5
GCGATCCAACAGGGTA	alt_4079_RC	24	28	29	22	18	11	31	25	29	17
ATTACTCAGCGATGGA	alt_4079_RC	54	34	80	49	44	39	49	50	54	53
TGCCATTTACCCACTC	ref_4079_RC	35	42	49	40	82	18	47	33	52	21
ATTTGGTTCTGTTTTC	alt_4079_RC	101	96	113	104	106	114	91	88	116	87
ATCAGCCTGTATAGGC	alt_4079_RC	20	26	27	10	18	13	17	19	24	11
GGGGTTAGCTTGGACG	alt_4079_RC	32	23	27	27	36	29	22	21	28	25
TTCGACCCTCGACTGG	alt_4079_RC	54	62	69	65	53	65	73	50	57	57
GTTGAGGGTAGATAGT	alt_4079_RC	56	75	76	78	88	67	79	61	67	67
GGTTTCGTATTTCCGT	alt_4079_RC	40	70	62	56	84	47	56	51	84	38
AACTCATCTCGTTACC	alt_4079_RC	84	122	131	128	143	98	161	85	174	109
CTCCGATTCGGTGGAA	alt_4079_RC	10	12	6	10	12	12	13	6	13	13
CGACCTGTCATTGTAG	alt_4079_RC	4	4	6	7	11	5	7	4	7	7
TACGCTATGATTCTAT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
GTAGCTCCACATATGT	alt_4079_RC	89	79	97	89	113	69	108	73	123	66
GATACAGAATATGACT	alt_4079_RC	95	98	140	103	105	112	140	99	129	96
CGAGTTAGAGTACACA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
TCGGTGTCGTATACGA	alt_4079_RC	23	39	33	28	36	24	36	30	34	25
AGGTAAGCTCAATGTC	alt_4079_RC	70	66	77	82	91	95	67	77	95	65
CAATTGAATATTCAGA	alt_4079_RC	52	55	60	50	56	41	85	45	62	54
CTGGTTGATGTCCGTT	alt_4079_RC	18	13	19	14	19	12	9	17	13	11
GTCTCGCATTCTCCCA	alt_4079_RC	16	31	46	26	39	26	23	31	39	43
GGTGGAACGACCGATC	alt_4079_RC	105	143	137	142	122	106	153	113	144	93
ACGGGGTCAGTATTAC	alt_4079_RC	69	86	82	62	90	63	88	59	87	40
ATAGTTTTTGGGTGGG	alt_4079_RC	20	11	18	16	24	18	13	19	20	22
GAAAGAGCTCGTTATT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
GGTGTACTCTGAATTA	alt_4079_RC	5	10	11	1	9	3	6	5	5	9
TTTAGCCTAAACTCCG	alt_4079_RC	2	15	7	4	13	5	10	6	15	4
TGTACCATGCCTCCGA	alt_4079_RC	13	14	20	12	6	13	12	7	8	8
GATTGGCAGTGCCTCA	alt_4079_RC	29	23	40	30	26	23	31	16	45	20
GTTAGGAATTCATTTC	alt_4079_RC	17	20	17	21	15	15	14	12	19	10
ACAACAATTCCGTGGA	alt_4079_RC	13	16	17	12	14	11	13	7	20	15
GGTGTTTAAGTTCTTG	alt_4079_RC	6	3	4	5	6	7	10	2	9	2
GCCAATCGGCCCTGCA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
AGCTCGTACGTCCCAT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
ATCACATAGCAGGTGT	alt_4079_RC	6	8	10	8	15	10	10	6	11	9
CTTAATTTATGGATTT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
ATCTTTTAGTTGTGAG	alt_4079_RC	7	3	7	4	7	4	3	4	7	3
TGTATGGCCTACGGAC	alt_4079_RC	1	4	4	1	4	3	5	4	8	2
GGGCTCTTTCCCATGA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
TGACGGGTTTGTCTCC	alt_4079_RC	63	70	74	62	104	51	76	50	86	57
GGGTACAACGGCCTAT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
GTTCGCTCTAGGGCGA	alt_4079_RC	168	200	161	140	210	140	229	179	232	145
CTGGACCTCGCGGCGA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
GACGCTATAGAAGATT	alt_4079_RC	32	27	24	23	31	22	35	31	38	23
AAGCCTATGCTCGCAT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGCTGGGGCTTG	alt_4079_RC	25	26	21	37	22	24	39	36	34	32
TTCTAAGATGAAGTCT	alt_4079_RC	105	86	88	106	88	80	100	70	92	79
TACGTAATGAGTGCTG	alt_4079_RC	41	72	75	50	80	52	70	50	61	52
CCGTGCGGCCTCCGCT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
GCTCCCGATCGCTTGT	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
TCCGTGATTTCAGCAC	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
GGTTCCATGCACGTCT	alt_4079_RC	2	7	6	9	5	7	6	8	7	6
TTAGTAATGTTCCAGG	alt_4079_RC	18	24	22	27	26	8	29	16	38	13
GTAGGCCGCCTTGCTA	alt_4079_RC	20	28	39	31	42	30	38	24	38	32
TGGGTCATTAGGTAGA	alt_4079_RC	25	25	51	42	34	33	40	38	43	37
CCGCCCCTACAAGCAA	alt_4079_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGCTTACGCTTT	alt_4079_RC	60	63	74	77	63	56	69	51	64	47
AAAGGCCAGAAAGAAA	alt_4079_RC	56	68	84	54	65	59	75	51	72	48
TGTGTATGTTCCTTGC	alt_4079_RC	28	40	28	33	44	27	50	24	38	29
AAGAATTTCGAGTTAC	alt_4079_RC	33	30	53	33	63	25	47	39	53	51
AAGATGCATCATAACT	alt_4079_RC	86	100	88	75	97	83	98	59	93	87
GACCGAATAATTCACG	alt_4079_RC	29	29	31	31	35	24	37	26	47	40
CACGGGTCAGGTATTT	alt_4079_RC	80	107	122	100	97	81	88	76	113	64
TGCTCGGACCGTTTGG	alt_4079_RC	12	9	23	10	27	13	23	9	24	8
CATCATAAGCTCACTC	alt_4079_RC	11	23	23	20	26	12	25	12	32	16
ATCATCTTATATCCTT	alt_4079_RC	300	263	338	277	268	290	291	276	279	251
GCTGGCTCTACGCTAT	alt_4079_RC	21	44	29	23	23	17	22	20	23	15
CTGTATGCCACCTGAC	alt_4079_RC	32	57	43	42	36	18	40	30	50	21
TGCGGCCAAGGGTCGG	alt_4079_RC	32	26	31	28	44	32	29	20	23	25
GCTTTTGTGCAAACCT	alt_4079_RC	47	56	46	50	53	39	52	41	39	28
ACTTGTACGCCATCGA	alt_4079_RC	41	33	38	27	22	30	38	35	44	22
TCGCTTGAGGTCTGAT	alt_4079_RC	1	8	3	3	6	4	4	7	14	2
CGCGTTGCGTAGACAC	alt_4079_RC	10	6	8	5	5	4	4	6	7	1
GCGTCGCTTCCCGCCC	alt_4079_RC	9	6	6	7	17	5	6	3	14	5
CGACAATAACTGCATC	alt_4079_RC	63	62	70	59	54	59	64	67	69	59
TCCATTTATACTACTG	alt_5656_new	15	26	18	24	34	20	33	18	24	14
GTCAGATGTAATGGAT	alt_5656_new	0	0	0	0	0	0	0	0	0	0
TGCTCCTTTTAAACGT	alt_5656_new	0	0	0	0	0	0	0	0	0	0
CTTTTATTAGTAATCC	alt_5656_new	0	0	0	0	0	0	0	0	0	0
ATATTGTTAATCGGGT	alt_5656_new	51	73	75	53	91	38	97	59	72	44
CAAGCTACTGCTTTGG	alt_5656_new	5	14	9	3	14	9	16	6	13	9
CTTAGAAGATGGCCTC	alt_5656_new	4	10	8	6	8	7	8	10	17	2
GGTGATGTTCAGCGCG	alt_5656_new	129	264	230	168	256	160	256	157	289	151
ACCTCCTAATTATGTC	alt_5656_new	0	0	0	0	0	0	0	0	0	0
GGTTTTTTATTAGGAA	alt_5656_new	0	0	0	0	0	0	0	0	0	0
ACGTTAATCGTTTATG	alt_5656_new	13	25	24	16	17	7	17	16	22	16
TTCTCTCGCGCCCCGT	alt_5656_new	2	5	1	4	2	4	4	3	7	5
CCTGACCATAGATAAC	alt_5656_new	0	0	0	0	0	0	0	0	0	0
TGATGCCCGCCCACCG	alt_5656_new	2	12	5	0	10	11	3	6	8	5
ATTTGTGTTATCCAGT	alt_5656_new	78	91	87	63	97	64	76	63	112	78
TTGGTTTCTGACAGAA	alt_5656_new	0	0	0	0	0	0	0	0	0	0
TTACTGGATGCAGGGC	alt_5656_new	4	8	11	4	7	8	2	3	9	5
GAGTTCGCGTCTTTAC	alt_5656_new	0	0	0	0	0	0	0	0	0	0
ATTCTTTTGCGCCTTT	alt_5656_new	23	31	28	29	34	31	41	11	25	36
CCGAACCATCAATCTG	alt_5656_new	2	4	5	2	4	4	7	3	6	1
GCTCTGCCTATATAGG	alt_5656_new	0	0	0	0	0	0	0	0	0	0
GCGGTCGGACTGTGCA	alt_5656_new	5	28	8	6	12	5	14	5	23	6
AAACCTGGAGGAGCGA	alt_5656_new	0	0	0	0	0	0	0	0	0	0
GCAAGAACAGTTGACA	alt_5656_new	0	0	0	0	0	0	0	0	0	0
GATAGTGAACTTTCTT	alt_5656_new	20	35	23	23	48	24	33	17	32	19
ACGTAACAAGTGAGTG	alt_5656_new	17	41	26	28	46	22	32	20	46	24
CCTGCGGGTCTACGAC	alt_5656_new	80	113	118	90	123	84	133	78	134	94
GAAATCGTTATTTGTG	alt_5656_new	0	0	0	0	0	0	0	0	0	0
TTCCATTCAGGTCCTG	alt_5656_new	9	16	8	5	8	12	8	14	21	9
TTTTCGCGTGAATCCA	alt_5656_new	0	0	0	0	0	0	0	0	0	0
CTTCTTTTAATGCTCA	alt_5656_new	0	0	0	0	0	0	0	0	0	0
CCGTAGTGGGTGAGGG	alt_5656_new	5	3	5	5	10	4	7	3	8	4
TGTCATACTTCTGCTG	alt_5656_new	0	0	0	0	0	0	0	0	0	0
CGTCTAGGGTCGAAGG	alt_5656_new	60	109	82	93	124	76	110	77	108	76
TACGCTTGATTTTGCT	alt_5656_new	47	78	38	45	52	38	42	35	80	33
TGTCCGTCGTTGTTCC	alt_5656_new	0	0	0	0	0	0	0	0	0	0
GCCCCAAGGGACAACC	alt_5656_new	16	29	14	16	40	21	27	19	30	20
AGTGCGTAACCGATGG	alt_5656_new	0	0	0	0	0	0	0	0	0	0
GTCTCCTCCCATCGCT	alt_5656_new	54	79	56	60	64	52	100	51	78	50
CTCCTATTAGATGTCT	alt_5656_new	0	0	0	0	0	0	0	0	0	0
GTGCGTGTAAGGACTT	alt_5656_new	3	14	14	10	11	8	16	3	18	5
GCATGTTTCATAGTAT	alt_5656_new	9	17	21	20	24	8	20	15	29	15
TGCTTTCTATTCATTT	alt_5656_new	28	29	31	13	25	14	29	22	35	22
CCGTTCACTAAGCGAA	alt_5656_new	16	13	4	9	16	11	11	10	13	10
CGTTTTTAGTTTCATA	alt_5656_new	20	28	25	23	39	27	36	23	32	26
AGGTGTGATATATGAT	alt_5656_new	5	10	9	4	14	11	14	3	19	5
CTAGAACTCAAACTCA	alt_5656_new	0	0	0	0	0	0	0	0	0	0
CATATTTTTATGCTTG	alt_5656_new	3	8	12	4	5	3	6	8	7	8
TTTTGAACTAAGGCGC	alt_5656_new	0	0	0	0	0	0	0	0	0	0
CATCGCCTTCGTTCTA	alt_5656_new	81	121	72	64	97	53	109	68	130	39
GTTTGCTCAGTACTTA	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TTTCATGCGATGTTAA	ref_5706_new	30	46	36	27	67	34	51	30	59	27
ACAAAACCTTATGTCA	ref_5706_new	2	9	4	7	7	4	5	2	8	5
ACCGATGGTACCAGTC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
GATCCACTCCTACTAG	ref_5706_new	60	133	74	66	138	47	131	71	173	45
AGCTACTAGGAATTGT	ref_5706_new	23	32	24	27	34	20	47	23	38	26
CAAGTTTTCGGGGTAG	ref_5706_new	0	0	0	0	0	0	0	0	0	0
CACTCTCTGGGCGACG	ref_5706_new	28	37	29	30	47	20	37	17	43	15
CCACCGACATCTGTGT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
ATAGTTTCTTGCAACC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
AAGTAGATGACTGGTT	ref_5706_new	52	103	79	64	89	55	82	70	101	41
CCCACCAGGACACACC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
CTTTCAGGGTCCCCCG	alt_5706_new	0	1	0	0	0	0	0	0	0	0
TACCGTGGGACAACCA	ref_5706_new	59	117	66	75	136	57	148	63	155	69
CCGAATCCCTCCAGAG	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TACATAATACGGTTGA	ref_5706_new	14	35	16	20	36	19	26	25	30	17
AATCTCTTCAGAGCCG	ref_5706_new	23	27	26	13	36	16	39	16	31	17
TTCGTTCAGTGGTAGA	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TGACTCGACTCCCCTG	ref_5706_new	0	5	0	0	1	0	6	0	2	0
ATGAGGTTGCGGTGGT	ref_5706_new	5	7	1	1	5	2	7	2	6	3
TTCTTCGCGTCTGTGA	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTACAGAGGTA	ref_5706_new	38	60	46	31	51	26	61	39	60	31
TCCTCCTATTTCTTAA	ref_5706_new	7	11	9	8	30	9	18	8	23	13
AGGTTCCTCGCGATCG	ref_5706_new	6	6	4	7	6	3	9	3	16	7
TAGGCACCGTGATCAG	ref_5706_new	84	179	99	98	159	98	171	80	193	88
CTCTTCTAATCTCGGC	ref_5706_new	4	4	6	3	10	3	9	4	5	1
TCCTCAGCGATAGACT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
ACTTCCCGTCCCCAAA	ref_5706_new	11	49	26	19	46	16	28	15	27	17
TTGCCTTATTTTGTCA	ref_5706_new	13	16	10	13	29	21	26	13	20	10
CTTTAAACGAATCTTC	ref_5706_new	24	20	14	16	30	13	29	21	35	21
CGGTTTCTGTTATGTG	ref_5706_new	36	76	39	23	81	24	67	27	98	29
TTTCGTGGTTTGCTGG	ref_5706_new	10	23	4	5	16	7	11	8	18	8
GGACTAGCCGCGTAAG	ref_5706_new	10	20	13	23	24	14	22	13	24	13
ATTGCCACCAGCAGGA	ref_5706_new	13	12	13	10	16	9	24	4	24	8
GGGTTCAATTTCCTTC	ref_5706_new	6	16	15	15	20	9	27	20	15	11
CACGCTAGGACTGTTA	ref_5706_new	25	51	34	33	54	30	65	22	54	27
GTTCTATTGGGTAAAT	ref_5706_new	131	292	170	139	298	171	314	144	336	143
GAGCACGGGCTCCTCC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
GTCTTTTATCCTGGTC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TTAACATGTAGGGCTT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
CCCAATCATGCTTGGT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
ATGCGTAATTATATAT	ref_5706_new	6	13	5	6	5	1	12	6	8	10
ACGTAATAGTCTCGGG	ref_5706_new	108	185	130	115	197	105	200	97	228	110
CATCCTGCGCGCGCGT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TGCACGGACATGGACT	ref_5706_new	11	23	24	17	33	11	35	18	34	10
AAGAACCCATTTAAGG	ref_5706_new	0	0	0	0	0	0	0	0	0	0
GGACCCTAGGCCCAGT	ref_5706_new	34	71	37	42	87	47	74	43	81	41
TAAGCCATCGGCCGTC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
AGATATGCTTGGGCCT	ref_5706_new	21	48	34	19	37	31	55	25	64	24
GCGTTCGGAACCACGC	ref_5706_new	47	91	74	42	109	51	98	54	104	41
CGCATGATTGAGAATC	ref_5706_new	9	49	15	24	34	13	46	18	28	17
ATCGTGATATTCGATC	ref_5706_new	84	134	90	70	131	88	128	60	148	55
TGTTTCCAGGAGCTCA	ref_5706_new	66	117	91	70	109	80	126	56	126	57
TTCCCCTAATAGGAAC	ref_5706_new	7	8	3	5	25	3	16	2	18	5
AAGTATCCGTGAGGGA	ref_5706_new	24	48	25	23	55	25	46	18	45	25
CGAAAGCCATAGCCCA	ref_5706_new	0	0	0	0	0	0	0	0	0	0
AAAGCGTGCTTCGTCG	ref_5706_new	0	0	0	0	0	0	0	0	0	0
AACGTCCCAGATAGAC	ref_5706_new	8	3	7	0	5	2	2	5	6	1
TTTCGTCACCTGTAAT	ref_5706_new	0	2	0	0	1	0	0	1	2	0
TCGTCGGCACACCTTT	ref_5706_new	31	61	35	36	48	25	60	27	74	27
CTTAGTATTTAGCCCG	ref_5706_new	7	20	8	9	15	11	29	17	20	10
CTCATCGGACCCTACT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
AACTATTCACTCAGTT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
ATTATTGTAGTTAAGA	ref_5706_new	1	0	2	6	9	4	6	3	4	2
GTCGGTTACGCAGTTT	ref_5706_new	26	37	40	25	48	29	40	22	49	24
CGGTCCTATCTGTCGT	ref_5706_new	15	22	10	11	21	8	24	9	26	7
CCTGGGCTCGCCGCTC	ref_5706_new	28	42	29	29	36	20	56	26	58	28
ATATTGTTGGAACGGG	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TGCTTCAGCGCCCCCC	ref_5706_new	18	38	26	25	59	14	59	26	67	19
ACGCACTACATATAGT	ref_5706_new	22	43	42	28	40	25	54	25	60	16
ATTAGGCTCGCTTCCG	ref_5706_new	0	0	0	0	0	0	0	0	0	0
GAGTGTGGGACCACCA	ref_5706_new	98	181	132	104	160	110	198	102	207	85
CGGGGGCATGTACGAG	ref_5706_new	5	19	13	9	15	6	16	16	12	10
CGTCCATAATTGGCAC	ref_5706_new	6	30	8	9	29	10	18	15	31	10
CTCTATTGGCATTTGA	ref_5706_new	10	31	16	13	14	6	29	4	18	5
TCTCTTAGTTATTCAA	ref_5706_new	12	25	11	12	25	4	15	16	13	8
CTGTGCTAGTTGTAGG	ref_5706_new	2	9	5	6	4	0	7	4	8	3
AGCCATAAATTCTGTC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
CTCTGATTTACGTATG	ref_5706_new	0	0	2	0	2	0	0	2	2	0
CTTCAGTAAAACCTTC	ref_5706_new	0	1	0	2	0	4	4	0	2	2
ACATACACAGCAGCTA	ref_5706_new	7	11	13	10	16	8	17	5	15	7
CATGTTGCCTCCTGTG	ref_5706_new	2	12	11	12	14	12	14	4	15	5
AGAACCGGTATCACAT	ref_5706_new	93	116	104	92	165	109	184	94	162	66
CGAGTTGCGGATGCAC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
CATGTCCATCTCTTGG	ref_5706_new	2	6	9	4	12	4	12	2	5	5
GACGGCAAGTAGCCTA	ref_5706_new	0	0	0	0	0	0	0	0	0	0
GGCGATAACCGTCATG	ref_5706_new	8	11	9	7	18	9	22	9	8	13
TTCCGTGCTCGTCCTC	ref_5706_new	10	24	14	19	16	13	16	5	13	11
TCCTGGTGAATGGGGT	ref_5706_new	1	1	6	0	5	0	9	0	4	3
AGTGGTTCCTTTAGAA	ref_5706_new	19	30	27	18	39	16	28	9	37	26
TTTAGAGCCTTTTACT	ref_5706_new	0	0	0	0	0	0	0	0	0	0
AAGAATCTTTTTTATT	ref_5706_new	21	18	15	14	23	22	32	10	31	11
ACTTAACCTTCTCATT	ref_5706_new	9	17	16	8	16	10	15	12	20	5
TGCGTCCACGTGACTT	ref_5706_new	9	20	22	16	9	13	16	12	18	8
GGCCGCACTCTAATAG	ref_5706_new	21	46	36	23	69	21	54	20	45	31
GTAAGCGGCGAGTACA	ref_5706_new	10	25	11	13	18	9	35	12	22	7
TGTTCCGCGTGATGCG	ref_5706_new	16	22	18	24	33	22	46	9	28	19
AATCTATTCTATAAGT	ref_5706_new	4	4	3	7	3	3	12	6	9	5
CTTGGACCCGGTCCCA	ref_5706_new	0	0	0	0	0	0	0	0	0	0
TTACTATTGGCTGTTG	ref_5706_new	3	3	9	4	3	4	3	1	8	2
GTTCCCAATGCGAGGC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
AGGTTGCACGGTTTTC	ref_5706_new	17	26	21	28	29	17	32	28	54	18
GAAGGAATAGGTAGCG	ref_5706_new	0	0	0	0	0	0	0	0	0	0
CCTCGCGACACCTACC	ref_5706_new	10	50	12	13	29	8	46	4	61	5
CATCCTGAATCAAACG	ref_5706_new	16	30	30	22	30	11	38	8	49	15
TCTGGCCGACGTTTTC	ref_5706_new	0	0	0	0	0	0	0	0	0	0
ATGAAACTCCCTATCA	ref_5706_new	7	6	2	1	6	0	8	1	8	5
CCTTTTTCAGAGGTTA	ref_5706_new	10	4	11	12	12	17	13	5	14	3
TCTGCGGTGGTCCTGT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTTGTTAACCCGC	alt_3878_upstream	84	40	106	71	43	84	39	70	49	51
TTAACGGTTTTTAACG	alt_3878_upstream	25	7	31	17	15	7	4	22	5	18
CCTCAGGATTAGCCGA	alt_3878_upstream	10	4	19	13	10	7	4	13	9	5
CGGAAGATCCTGGGGT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TATGAAAGCGGGTCGA	alt_3878_upstream	115	58	174	152	79	125	71	122	86	110
CGTAACGCAGGCAATT	alt_3878_upstream	34	30	44	50	19	36	24	29	32	34
TTCATCCTTTTGCGTA	alt_3878_upstream	27	15	28	35	25	26	20	36	22	30
CCTCGCCTACATTTAG	alt_3878_upstream	0	1	1	1	2	3	2	0	1	0
TGTTCGTTAACTTTTG	alt_3878_upstream	55	27	67	82	39	80	39	62	41	57
ATCCGCATCGCGCTTA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTAGTTAGTCTAC	alt_3878_upstream	150	96	162	161	108	154	87	129	125	130
TGTGACCAATTCGCCA	alt_3878_upstream	82	42	75	63	37	63	52	51	51	56
AATTCATGCCCCACTT	alt_3878_upstream	12	7	8	3	7	11	9	8	5	4
TCTCGTTCTGTCATAG	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
ACGCGATATCGAATGT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCTGATTCTAATT	alt_3878_upstream	18	12	20	27	17	22	14	21	14	13
GCTCTTGGGCCCCTTA	alt_3878_upstream	19	19	29	23	10	14	15	33	12	17
TCAATGAGTTTTCTTT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
ACCTAAGGCGCAATGG	alt_3878_upstream	148	84	135	141	61	83	85	125	94	110
GAAAACGGCATAGGCC	alt_3878_upstream	66	41	85	99	36	71	38	82	56	53
AGGTATGAAGATTTTC	alt_3878_upstream	18	15	31	40	12	18	9	18	12	20
ATTGTACCCCTTCAAA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
CGTTATTACATCAATT	alt_3878_upstream	9	4	8	8	4	6	5	14	5	6
CAGTTGTTGGTCACTC	alt_3878_upstream	72	36	76	75	44	48	41	62	45	54
GTTCTACTTACATCAG	alt_3878_upstream	92	68	102	69	54	61	47	80	55	57
TCACCTAGGGTCTTGC	alt_3878_upstream	7	7	8	13	5	10	4	13	11	7
ATGTATTGACCTTAGT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCTTCCGATTACG	alt_3878_upstream	47	33	66	43	24	38	29	29	28	30
GGCACCGCTATATTAT	alt_3878_upstream	149	101	146	172	87	143	96	162	97	132
CAATGGTCCCCGATGC	alt_3878_upstream	36	28	24	33	21	26	13	39	17	29
GCGTTTCTCGAATTAT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCTGGACGATTTG	alt_3878_upstream	79	49	84	76	45	78	56	76	53	73
CCATTATGCGGTGCCC	alt_3878_upstream	88	65	107	101	65	95	61	69	48	111
ATATTGCAGCTCGGAC	alt_3878_upstream	49	25	66	71	22	69	35	51	29	43
AAGTGTTAGCTAACCG	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCGGTGGTCCTGC	alt_3878_upstream	19	13	29	23	17	17	11	20	13	17
AATTCGGCACAATAGT	alt_3878_upstream	16	9	11	16	9	8	8	15	17	14
CAGCATGTTAGTAGGT	alt_3878_upstream	6	10	2	3	10	2	9	3	16	0
CTTCTCGTATCTGAAC	alt_3878_upstream	21	9	18	15	9	16	9	26	9	11
CTTTAGCCATTCTAAG	alt_3878_upstream	121	97	167	91	72	113	66	109	108	112
CGGTGCTATAACTCAA	alt_3878_upstream	294	211	374	315	204	275	223	265	222	239
TCGGTCAGCGGACTCA	alt_3878_upstream	24	17	19	36	12	19	21	18	15	17
GCCTTATGCGTTAACT	alt_3878_upstream	25	13	17	12	11	20	22	17	17	19
AATGCACTTGTGCAGA	alt_3878_upstream	21	21	37	33	19	23	8	30	19	27
AGCTAAGTCCGATCCT	alt_3878_upstream	39	20	44	58	23	39	19	27	19	27
GTGATGTGACATACTA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGGACCCCGATGA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
AGTTATGTGAAAATGC	alt_3878_upstream	43	20	54	49	29	48	26	39	28	40
GATACGCTCTTAGTCG	alt_3878_upstream	102	52	130	92	46	76	66	98	47	82
CCGGTTTGTTTCTGGG	alt_3878_upstream	10	46	13	12	38	14	57	8	38	6
TAGTTGGTCTCGTGCC	alt_3878_upstream	25	14	51	29	20	18	11	24	22	19
TCCCGGCGCGGGTCGC	alt_3878_upstream	1	2	1	0	5	0	1	1	8	0
GGAAAGAGCAGCTTGC	alt_3878_upstream	46	32	67	46	31	45	28	54	32	33
CTACCCGGCGCTATCT	alt_3878_upstream	159	89	184	176	83	123	93	146	91	120
CTGGTTGAGACGTACT	alt_3878_upstream	194	128	251	171	156	173	140	184	154	181
CAATTAGTAAGGGCAA	alt_3878_upstream	13	7	15	16	12	8	8	14	12	14
TTAGTAACACCGACGT	alt_3878_upstream	12	9	15	6	10	9	12	12	9	13
AAACACCTTCCTGTAT	alt_3878_upstream	51	32	62	61	31	34	41	44	37	51
TTGCAGTTGATTTGCA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGAAATTTTCAAG	alt_3878_upstream	8	2	11	2	2	2	3	6	5	1
CATGTTAGAGTACGGG	alt_3878_upstream	2	1	4	3	1	5	1	5	7	3
CCCGTTCGAACTGCGG	alt_3878_upstream	27	27	30	37	31	40	27	40	25	37
AACTGGTGCTCGGGGG	alt_3878_upstream	62	35	76	63	41	59	31	68	38	50
TGAAAAAGTCGATGGG	alt_3878_upstream	56	42	71	70	50	63	38	63	49	57
AACGTTTCGGGTCCTG	alt_3878_upstream	8	6	8	6	5	9	5	11	6	7
CTTTGCAATCGGATCT	alt_3878_upstream	18	20	28	23	17	22	15	24	14	12
TGAAACTCATGGCAGC	alt_3878_upstream	113	64	146	136	60	112	71	110	89	123
TATTCAACTGAAGCTT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAATGTATGATTC	alt_3878_upstream	156	84	155	149	89	132	61	139	78	105
TCATTTGGGCATAGTG	alt_3878_upstream	0	2	5	6	3	3	0	6	3	0
CCTAATTACGCGAATG	alt_3878_upstream	26	7	23	34	22	22	18	24	19	14
CTGTAATTGCATCTTT	alt_3878_upstream	85	55	102	90	53	94	66	77	53	65
TGTAGGTGATAAGACC	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTGGATTCTTAAT	alt_3878_upstream	61	41	83	85	55	101	53	90	48	79
CCTCGCTGCAGATCGT	alt_3878_upstream	85	76	118	88	76	85	71	79	104	68
CGCATTCCGTTTTGCC	alt_3878_upstream	124	80	181	154	59	114	72	124	79	109
TCTTATCTACTTCTTG	alt_3878_upstream	16	12	30	24	13	20	13	12	11	18
TCGAAAGTAGTAATAT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
ATGATCGTAATCTGTC	alt_3878_upstream	23	16	37	28	13	18	11	19	15	28
CTGGACTCTATTCGGG	alt_3878_upstream	72	40	61	61	41	47	42	75	35	60
TATTGTTCTTCAAAAC	alt_3878_upstream	73	48	112	102	40	76	60	80	43	54
TGGTGTGTCACACAAA	alt_3878_upstream	189	95	188	178	128	161	109	160	122	136
AAGTCCGCTGGCCAAT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCCCTTCGACGTG	alt_3878_upstream	7	13	5	3	25	11	14	7	15	3
AGATGCGCCAGTCCGT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TAAATATTGTTTCTTT	alt_3878_upstream	67	46	77	67	33	41	36	61	47	48
CCCAGTATCGGGCTGG	alt_3878_upstream	49	27	54	58	25	47	27	36	21	37
GATCTATCCGACAGGG	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
GTTAAGTCGTAGGGTG	alt_3878_upstream	18	11	16	14	14	13	8	13	21	13
TCATCTTACAAGCCTC	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTAGCCGGTTTGC	alt_3878_upstream	52	37	63	58	36	42	38	31	38	36
GCGGTCTGATAGTTTA	alt_3878_upstream	40	31	40	37	25	37	25	34	30	43
GGATTGCGTCACCTTG	alt_3878_upstream	105	71	150	126	82	122	70	104	81	115
GCAAGGGATCGATGAC	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TAATTATGGCTGTATT	alt_3878_upstream	28	14	37	23	9	24	20	42	5	12
TGTGTCTTTGCTAGGA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGTACACATATGT	alt_3878_upstream	0	3	7	4	2	6	7	6	1	4
GCAACATAGGTTTATG	alt_3878_upstream	30	16	31	39	30	23	18	18	23	17
AATTTTAGTCTGCCGC	alt_3878_upstream	9	10	14	25	8	21	10	21	13	17
CAGTCCACGTCAATAT	alt_3878_upstream	8	10	26	16	14	17	14	14	24	10
TCATTCTGGCTTTGCG	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
ATCATCTGAATTGACC	alt_3878_upstream	49	38	57	51	49	65	50	41	39	54
GAAGAGTGCATAGTTT	alt_3878_upstream	55	43	60	55	50	47	31	46	44	43
GGGAACAAAGCAATTC	alt_3878_upstream	132	78	186	150	86	127	94	148	78	126
GTGCTGGGTGTATTGT	alt_3878_upstream	21	23	18	25	14	26	23	20	14	15
ATGGGGTTGTTCGGAA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATTCACTACTTC	alt_3878_upstream	2	3	3	3	1	2	1	3	1	4
GCTTGCATGCCTTCGG	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAGCCATTTTGAG	alt_3878_upstream	205	106	270	236	120	198	127	219	118	178
GTCTATGTTCGATAGA	alt_3878_upstream	37	34	53	37	30	23	26	36	38	34
CTACCCAGCGCTATCT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TTCACGGCCTACCAAT	alt_3878_upstream	14	11	31	16	7	15	4	22	13	15
CTGACCCGAAATGCGT	alt_3878_upstream	83	65	93	74	49	79	51	78	53	66
CCGGCAAAACCCCGGG	alt_3878_upstream	10	25	17	10	24	9	24	12	31	16
CTATTCCAGGGACAAT	alt_3878_upstream	17	11	15	23	11	11	13	17	15	11
TTCTTGAGTGTTAGTC	alt_3878_upstream	13	14	33	25	8	19	14	26	7	11
CCCTTGCGGTTCTCTA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
CTATTACCTAACACCG	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
AAATGAAGCGACACAT	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
GACGTTTGAATGTGGC	alt_3878_upstream	154	103	198	172	102	148	101	137	121	126
TCTCATTATCATTTTA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAACCTTGATCCC	alt_3878_upstream	44	16	28	41	14	33	20	30	16	31
ACGTGAGTTTGTATTG	alt_3878_upstream	77	72	136	98	74	107	90	92	88	76
CTTTGACCGTAAGGCC	alt_3878_upstream	36	20	32	35	21	25	20	22	10	30
ATCCGCCGTTGACTCA	alt_3878_upstream	0	0	0	0	0	0	0	0	0	0
GCAGACGTTAGACTTT	ref_6031_new	52	87	59	46	76	62	80	45	83	37
TACCACTATGCGAATA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
CGACTTTTATTCGCCC	ref_6031_new	21	33	33	34	38	21	57	23	51	12
TCTCGTTAATTTCAGT	ref_6031_new	11	30	15	17	18	13	34	13	24	18
CAATATCTGTGGCCAT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
AGTTGTCTCCTATCCG	ref_6031_new	6	8	13	7	20	6	13	4	13	7
CGATCCAGTAAACTTT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GTCGTTTATCAGCCGG	ref_6031_new	14	32	21	22	33	16	16	18	27	15
TCAGCAACGCTGGTCG	ref_6031_new	10	43	27	20	31	10	28	18	46	6
ATCGACATACGGGCTG	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TCGGCTGTAGAGATGC	ref_6031_new	18	25	16	11	22	20	23	11	30	27
TTCTTGTTCTCTTATT	ref_6031_new	39	70	42	34	72	27	59	24	54	31
TCGGCTCATTGGCGTT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GCCCCGCATAATGGGT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
ATCACGGGGTATGGGA	ref_6031_new	35	62	38	53	53	39	80	44	69	35
CACCGCTCGATCTGGT	ref_6031_new	20	39	29	8	42	10	36	15	46	17
TCATGACTCGTACGGT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GAAATCCGATACCTTT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
CCTGGCTGCTAAATTT	ref_6031_new	16	35	23	21	61	15	48	20	54	12
CTCCCACTTAACCGGA	ref_6031_new	1	9	2	2	28	5	13	8	9	2
TTGCTCGTCAGTGGTT	ref_6031_new	17	24	13	12	28	16	28	12	30	18
ATTTTGTTAGTGGTAT	ref_6031_new	25	42	25	33	40	29	52	24	40	25
TCTTGGATCTATACTC	ref_6031_new	8	21	9	7	25	19	13	8	15	10
CCGGGGCTCGATTCAT	ref_6031_new	22	15	10	19	25	8	22	17	18	14
TAAACACTTGCTGCAG	ref_6031_new	6	21	17	20	22	8	24	12	27	10
AGCCTATCGTTTAGTG	ref_6031_new	0	0	0	0	0	0	0	0	0	0
CAGAGTTCAACCTTCG	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GCCGGTTGCCTGGCAA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CGGGGCCTGTTCTTTT	ref_6031_new	14	36	27	15	37	17	25	16	18	16
TCTTAGTATTTCTATG	ref_6031_new	18	40	22	23	37	19	43	25	43	17
GTCACGTCTAAGTCCT	ref_6031_new	56	112	89	67	108	57	134	48	130	48
GCCTATATGTTGGTTC	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GATGGGGGGAGATACG	ref_6031_new	1	1	5	0	2	3	5	0	5	0
TAAGATTTGGGCGTAT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GATTCACTATAGTTAC	ref_6031_new	33	43	32	31	63	49	73	35	45	29
TCCATTTTAGCCGTAC	ref_6031_new	15	30	39	16	33	15	40	19	43	18
GCTTACTGTCGTCGCT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TTCTGTAGGTTGGACG	ref_6031_new	25	39	23	19	42	28	44	18	35	19
CATAAGTTGGTTCAGT	ref_6031_new	7	9	13	7	5	6	9	1	19	10
TTGGCTCAGGTCATTG	ref_6031_new	11	27	15	23	27	12	27	18	27	15
TGCAAAGGGCCGATAG	ref_6031_new	42	87	52	45	75	52	71	52	71	46
TTCCCGCTGGCCTTCT	ref_6031_new	8	37	13	4	23	10	41	9	32	14
TCATCTTGGACAATCG	ref_6031_new	12	21	25	18	28	12	26	10	43	10
TGCATTCTGCCGATTC	ref_6031_new	18	34	22	22	39	25	36	21	36	25
TTCCTGCAGGCAGCCA	ref_6031_new	55	88	95	60	112	53	121	49	99	45
GTCATCATCCTCAAGG	ref_6031_new	68	98	67	68	104	64	102	72	114	61
TCAGACATACCGCGCG	ref_6031_new	43	79	46	51	99	41	75	47	71	33
ACAGCGGCCTTAAATG	ref_6031_new	16	22	8	17	25	12	23	6	21	12
GGGCTGACTGGATAGA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GGCTTCGATTCCACTT	ref_6031_new	18	31	40	31	54	30	52	27	58	16
CTGGTGGCAGTTTGCG	ref_6031_new	13	10	18	11	19	8	23	10	17	9
GAAAGTCTAGTACCAT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
AGTAAATTCCGGGCTT	alt_6031_new	48	82	55	50	105	55	77	38	69	48
ATGTATACGGAATACG	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TCATATAGTTTCAACT	ref_6031_new	11	31	15	15	30	21	47	14	53	21
GAGTCTACGCGAAGCG	ref_6031_new	15	36	40	21	27	32	45	21	35	26
GTCGTTTCTTCACGAG	ref_6031_new	50	111	100	85	91	64	115	54	111	42
ATCGACAGTCTTCCGA	ref_6031_new	6	8	6	1	7	4	6	5	9	5
AAGGGTTGCATTGGTA	ref_6031_new	3	3	8	3	7	5	8	3	5	3
TACAAAGGGAAAAAGT	ref_6031_new	47	73	69	58	73	55	79	44	86	42
GCACTGTTGCGGACAC	ref_6031_new	55	103	58	71	106	39	88	50	100	39
ATGGCCAAGAGGACTG	ref_6031_new	21	25	14	18	21	11	25	13	30	12
AAGGGGCTTCTCAGCT	ref_6031_new	55	98	78	68	63	67	91	46	106	55
AGCAAAGATATACCAA	ref_6031_new	6	10	12	10	9	11	15	6	12	3
AATCTCGCTCACCTTC	ref_6031_new	0	0	0	0	0	0	0	0	0	0
ACCGAATCAGTACCAA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TCCGGCTTTTAATTCT	ref_6031_new	17	27	17	14	27	12	31	12	19	15
GCGTATCCAAATCTCC	ref_6031_new	10	14	16	9	28	11	25	8	17	9
TCGGGGGCGGGAGTTT	ref_6031_new	13	17	16	12	31	10	21	9	23	11
GTACGGTTTCCATGAT	alt_6031_new	50	63	59	44	73	39	66	45	77	29
TTATCGCTAATTCTAC	ref_6031_new	1	3	4	3	2	2	12	1	3	2
GTGTAATAAAATGAAG	ref_6031_new	18	25	25	24	14	21	32	19	30	13
AATTGGTGGAGAGAGC	ref_6031_new	101	151	125	114	156	114	146	70	176	103
GTGTGGCAATCAGCAT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
ATGTTAACAAGGGAGG	ref_6031_new	52	59	50	43	77	48	84	48	85	56
ATGCTAGGCAGTAATG	ref_6031_new	0	0	0	0	0	0	0	0	0	0
CATTCGCCATCTGGGA	ref_6031_new	32	67	31	40	58	27	54	30	50	23
ATGAAGGTTTGACGAA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GGGTTCTAGCACATGG	ref_6031_new	63	112	70	62	114	50	100	53	131	61
GTATGTGGCAGCACTC	ref_6031_new	0	1	0	0	1	0	0	0	1	1
ACCTGTAAAAGAGGGT	ref_6031_new	43	71	46	50	67	45	75	31	81	39
TTAATTATACTTGAAT	ref_6031_new	8	21	19	19	29	9	30	11	23	11
ATCTTTCCAGTTCGTC	ref_6031_new	21	38	37	23	54	26	45	15	47	16
GAGCCCATATAGGGTA	ref_6031_new	26	35	23	30	30	12	39	22	37	25
GGCCTGAGCTAGAACC	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TTATCCCTTACCTTAA	ref_6031_new	3	9	1	0	8	2	9	4	11	1
CGTTGTTTGCGCTCGA	ref_6031_new	4	10	7	3	8	5	9	3	7	4
AGGCGTCTACTTCTCG	ref_6031_new	18	22	23	9	29	18	22	11	31	11
GAAAGAATATCGGGCT	ref_6031_new	20	30	26	23	24	11	34	22	28	20
TAATTTTACGGACAAT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
TGATGATCCGCCGTTC	ref_6031_new	18	17	30	28	35	27	17	9	33	11
TCTAGCCACTGGTGGG	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TTTGTCACACAGTGTG	ref_6031_new	2	4	3	3	7	8	7	6	4	1
AGGTTTGTTTTCTACG	ref_6031_new	88	147	105	90	167	67	172	84	153	77
GGACAAACGTCACCAG	alt_6031_new	24	33	36	26	38	28	30	25	37	18
AGTCCCTGTACCCTAT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
GAGCATCAATTCGATT	ref_6031_new	3	5	0	2	6	3	5	2	3	6
TTGATTCATTATGCAG	ref_6031_new	25	35	31	25	48	17	62	22	35	28
CCTGATTGTCAGCCCT	ref_6031_new	26	53	28	33	51	36	55	23	54	24
ACGCTACACTGTCTCT	ref_6031_new	17	35	18	22	38	19	24	20	38	22
TAGCGCAAGTCTCTGC	ref_6031_new	41	64	53	45	84	40	77	40	79	51
CGACTGCCCCCGCTTA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
AAGTTCTGAAACGAGA	ref_6031_new	120	190	125	100	183	117	192	115	189	95
TGTCACAGAGAGCGAG	ref_6031_new	49	88	48	52	109	52	103	54	110	47
TAGGTGTGTGTGTAAA	ref_6031_new	1	12	9	0	6	4	9	5	20	0
TAGCGACCTAGTAAGT	ref_6031_new	9	10	12	5	3	3	9	10	13	4
TGTGTCTGTGTAGGTT	ref_6031_new	21	37	23	15	23	15	40	17	38	19
ATTTATAAATCAACGA	ref_6031_new	23	20	28	13	24	18	23	16	29	5
TACTACGTGCATCTTC	ref_6031_new	0	4	1	0	3	0	0	1	1	0
ATGAGATGATAGTCCA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TTTAAGCGTAACGCGC	ref_6031_new	5	27	11	12	28	12	18	12	14	15
TACCTTCTGATGGCCT	ref_6031_new	45	96	57	43	95	57	104	47	100	40
GGCTCTGTTTCTCTTT	ref_6031_new	12	18	31	16	21	21	36	19	27	15
TCACGTGGAAGGTACT	ref_6031_new	46	65	46	42	70	32	67	37	87	31
AGAGACCCGTGCGTTA	ref_6031_new	12	20	18	17	15	14	14	16	22	12
CAGTCGAAGCTCTACT	ref_6031_new	13	23	10	15	25	9	20	10	14	9
TGGCTCTCGTAGCCTT	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TGCCTAGTGTGTTATA	alt_6031_new	7	32	10	11	26	5	16	4	20	13
AAGGCCCAGCACAGTA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TTAATGTACGGTCGGA	ref_6031_new	11	19	12	11	17	13	36	17	20	13
AACGTACTTAACGCGC	ref_6031_new	23	59	29	33	42	27	57	23	60	25
GCTGAGAACAGTGCCA	ref_6031_new	13	18	13	11	25	14	19	13	24	13
CTAAAAATTAATTATC	ref_6031_new	17	36	22	12	28	9	32	14	36	20
TAGCTCCTTTAGCATA	ref_6031_new	0	0	0	0	0	0	0	0	0	0
TTGCGATGGATGTCAG	alt_223_upstream	21	17	35	16	21	20	33	26	27	28
GCCTCGCCGAACAACA	alt_223_upstream	25	32	26	22	26	22	18	15	25	27
TCGATCTGAATAAACA	alt_223_upstream	27	24	36	15	23	19	34	28	31	33
CAGCGGACACTCACCC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
AGTAATTTGTCCTTCA	alt_223_upstream	6	7	4	6	2	3	7	1	7	4
ATAGCAAGGAAATTGT	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCATGTTTACTCT	alt_223_upstream	3	2	9	1	2	6	5	0	2	6
GGATGGAATTCATTTT	alt_223_upstream	63	58	53	33	66	52	49	54	47	48
GTCAACCTTTGTCTAC	alt_223_upstream	34	53	30	46	54	32	57	24	63	34
ACTAGCGTGCCGCCGA	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
GATGTTCCAGAGCATT	alt_223_upstream	6	8	12	14	12	7	10	7	7	11
CGCCTCAGACACTTAC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
TCATATGTTTGTTATA	alt_223_upstream	9	14	21	20	17	17	14	11	16	18
GTTGCTGCGGCCAGAA	alt_223_upstream	54	76	84	53	80	41	78	64	74	62
GTTTTTGGGTGAGTTT	alt_223_upstream	0	0	0	0	0	1	0	0	0	0
TTACTCTCTGCCTCGT	alt_223_upstream	23	23	37	15	23	25	41	21	28	15
TGGCAATTGATCGGAG	alt_223_upstream	35	47	54	46	36	40	42	36	64	33
TTATTTTCATTGGACT	alt_223_upstream	40	42	70	66	51	33	55	44	58	34
ACTTCTATCATACGGG	alt_223_upstream	57	57	63	59	72	41	51	39	76	49
ACAGCGCGGGGTAGCC	alt_223_upstream	17	21	22	18	21	11	19	17	17	25
ACGTGCTGTCGCCGGG	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
GATACCATTTCATCTC	alt_223_upstream	38	26	44	43	47	50	40	32	37	30
ACTATAAATGATTACC	alt_223_upstream	39	46	53	40	48	24	48	25	63	41
GATGTATTCTACGCCT	alt_223_upstream	30	28	27	29	22	32	24	19	26	33
TATATAGCGTTGTGGA	alt_223_upstream	5	9	6	6	13	3	17	2	9	4
TATCATCTAGACTCAG	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
TTATCGCCATAGGCTC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
TATGGCGGTTGCTCCG	alt_223_upstream	4	5	9	7	11	4	5	8	1	6
TGCTCGTTTCCATATG	alt_223_upstream	87	69	102	82	90	81	83	87	106	82
TACAGGTTCCCCGCGC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
TACGGAGTTTGTGTCC	alt_223_upstream	27	16	38	32	25	27	26	23	25	21
TTATCGTATTTGCATC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCTAACTGGAACA	alt_223_upstream	27	12	28	18	15	27	23	15	20	8
GTCCGCTTCGCCCCAT	alt_223_upstream	44	43	57	50	36	36	58	35	52	35
GGTATCACTGACAACT	alt_223_upstream	24	37	42	22	28	20	31	20	30	14
TTGCCTAGCATGTGGC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCCAATTCCTTAA	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGCACTAAGGGAC	alt_223_upstream	272	300	269	295	312	258	350	256	349	228
GAACACTATAACAGTT	alt_223_upstream	40	44	62	43	51	32	56	36	69	39
TTCTATATCCCCTCCG	alt_223_upstream	49	52	47	52	67	42	60	45	44	46
GAGCTGGTGCATCATC	alt_223_upstream	89	140	128	101	149	102	158	89	169	107
TTTTCCACGTTGTAAA	alt_223_upstream	25	26	27	35	40	24	51	16	33	13
ACATTCTAGAACAGTT	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCCTTCGATGCCC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGTTACAATGTCA	ref_223_upstream	8	7	4	1	3	4	10	4	1	5
TTTTTTACGGGGAGGT	alt_223_upstream	39	43	50	68	48	63	55	41	51	50
CTTCTTTCTGTGATAC	alt_223_upstream	6	14	13	13	13	10	16	16	10	9
TTCGCGAGGGGTCAGG	alt_223_upstream	1	3	0	3	0	1	2	3	5	4
ATCCTCGTCGCGGGTG	alt_223_upstream	21	40	22	15	48	18	63	15	68	30
GATCCTGTTGGTCATC	alt_223_upstream	46	62	60	44	62	43	46	56	76	48
ACGGTTACTGTGGGGG	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTGGGTCCAACTG	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
AGGGCGCGGTAGCGTG	alt_223_upstream	7	26	19	7	12	15	17	17	23	17
CTCCATGCAGATTTCT	alt_223_upstream	11	11	6	16	11	9	16	6	17	9
TTAGAGAGGCATAGAC	alt_223_upstream	0	0	0	0	0	0	0	0	0	0
CTTTATATCATTCCCA	alt_223_upstream	13	6	17	14	14	8	11	8	16	13
AATCTTAACCATCGTT	alt_223_upstream	17	21	29	23	19	11	11	20	30	14
TTTTTGCCTTTTGCAA	alt_223_upstream	18	25	33	23	25	20	34	26	48	25
ATTAGGCGTGCTATGT	ref_223_upstream	32	28	40	26	37	44	46	36	46	33
GATTATTTTACTGATT	alt_223_upstream	15	12	13	8	23	6	20	7	13	8
TGCTCATCTTACCCCC	alt_223_upstream	12	16	31	24	22	24	24	18	30	22
GACTAGACTTCTGAAG	ref_223_upstream	84	80	83	68	78	69	94	79	89	54
GTTTTCCTGGGTCTAG	alt_5889_new	126	166	160	132	136	98	139	155	158	117
CTTGTATTGCTGTTTA	alt_5889_new	15	12	13	10	12	8	7	13	13	18
TTGCGTGTTGATGCGA	alt_5889_new	9	18	8	8	12	13	8	7	8	10
CTTTGGGCCTCATGTG	alt_5889_new	128	200	168	129	189	130	190	140	212	130
CCACATCAGGCCCCAA	alt_5889_new	0	0	0	0	0	0	0	0	0	0
TGTTTCGGGTCTTTCC	alt_5889_new	19	33	22	14	12	13	18	17	12	20
TCACTACCTTGGCTAT	alt_5889_new	2	2	3	7	7	1	6	1	3	2
GTCGACATCCTACGGC	alt_5889_new	77	85	87	79	94	93	108	70	104	64
AGGTCTTGCGGTTCTT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GTATTGCTCTGCTCCC	alt_5889_new	0	0	0	0	0	0	0	0	0	0
TGTAACTGCTCGCTTT	alt_5889_new	42	53	50	50	66	47	57	45	55	39
GTGTCATATTGTGGTC	alt_5889_new	40	37	47	44	43	34	43	42	37	38
TAATGGTGGATTGACG	alt_5889_new	209	179	224	162	164	172	186	140	196	140
GGCCTGCCCTATTATA	alt_5889_new	45	47	44	42	47	26	34	36	51	35
CCGATGCATAGGATAC	alt_5889_new	0	0	0	0	0	0	0	0	0	0
ACGTGCTGGTATCTGA	alt_5889_new	10	2	7	10	5	8	6	5	12	6
CTTGTCATCTACCCGG	alt_5889_new	39	55	40	43	70	32	61	33	48	30
CTAATTGTCCACTGGA	alt_5889_new	36	48	56	44	37	37	37	45	52	34
CTCAGTGTGTAACTTA	alt_5889_new	109	189	156	134	180	137	163	131	167	111
GGCCGGAAACCCGATT	alt_5889_new	38	24	47	38	37	35	42	16	33	26
CCGTAGCTTTATTGAG	alt_5889_new	15	25	17	17	36	11	25	15	30	15
TATGTTGTAATCCTGA	alt_5889_new	0	2	2	4	6	3	3	1	5	2
TTCATGGTGGACTAGG	alt_5889_new	35	61	47	52	47	44	64	48	40	30
CCCCGGCCCATTCTTT	alt_5889_new	7	9	5	6	10	1	12	6	8	3
ATAAGTTGTGTTCACA	alt_5889_new	57	90	59	61	72	54	76	53	71	46
GAGCAGTTTCTAGTCT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
CATGGCCATTTACCTT	alt_5889_new	37	55	45	32	47	41	42	30	54	42
TCATCACTCAAGCCTA	alt_5889_new	40	29	24	23	47	29	44	25	37	20
CCAGATAGTTTAATCT	ref_5889_new	12	17	9	15	5	5	19	8	21	13
GCCTAATTATCATACT	alt_5889_new	38	59	54	42	81	44	41	34	68	36
TGCCGCGCAGTTCTCT	alt_5889_new	9	12	12	8	15	12	6	12	9	5
TGATGGCCTGACTTCG	alt_5889_new	0	0	0	0	0	0	0	0	0	0
TGCAGTTGTATGTCAT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
ACCACGCTATCTCAGT	alt_5889_new	23	17	10	20	16	18	19	12	29	14
GTCCATTCGACACAAG	alt_5889_new	26	32	45	44	52	31	42	32	45	43
GCTCATTTGGGGTTCA	alt_5889_new	63	66	73	55	78	38	59	71	80	59
ATCCGTATATCCAACC	alt_5889_new	37	33	47	36	49	35	45	35	45	34
TGTCTATGAGAATCAA	alt_5889_new	5	13	13	5	13	13	21	16	21	9
ATGGGGTGACCGGACC	alt_5889_new	38	41	50	29	42	28	35	30	38	44
GTCATCCGGCCCCATA	alt_5889_new	29	33	33	27	45	22	28	33	29	19
GTAATTCGGGCGCGAA	alt_5889_new	123	175	141	117	170	134	149	107	174	111
TGAAGCATGAGTTGAT	alt_5889_new	89	69	81	61	73	72	91	89	55	59
AAGATGTGTTAGCCTC	alt_5889_new	35	42	50	32	44	25	35	24	36	26
AGTGCTTAACTTCGTA	alt_5889_new	37	50	44	43	67	38	45	44	60	36
AGCCCGCTCGAACCTG	alt_5889_new	2	3	5	2	7	3	11	8	7	2
GAGTCAATGAGAGTTG	alt_5889_new	69	57	68	48	62	45	76	46	68	53
CCGGTTAAAAGTGCTA	alt_5889_new	9	13	16	4	18	14	22	12	14	9
TTTCCAGCCCTCACAT	alt_5889_new	57	76	73	80	78	44	76	43	84	47
TCTGTGGAAGCCATCC	alt_5889_new	14	34	21	10	28	14	13	14	18	10
ACCATTACGCAAGCCA	alt_5889_new	0	0	0	0	0	0	0	0	0	0
CCTGTTTTGGGCACGT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
TTTAATACGATTTGGG	alt_5889_new	17	35	26	33	39	27	24	23	33	15
GTACTTTACCTTAAGT	alt_5889_new	35	100	44	27	116	40	117	34	118	33
CGTAAGCTTATACCCC	alt_5889_new	3	13	3	0	9	6	8	3	10	1
TAATGGTTGTTGATGG	alt_5889_new	0	0	0	0	0	0	0	0	0	0
CCATGTTTTAGAATTT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GCTCTGCCGTTTATTC	alt_5889_new	25	37	32	18	35	20	24	36	26	25
TAAGTTTTTTCGATTC	alt_5889_new	4	7	6	5	5	8	7	4	7	7
GTAATGCTTTCTGTGT	alt_5889_new	43	47	63	67	57	62	51	43	52	56
TTTCTAGTCACATGTG	alt_5889_new	18	24	24	18	23	25	26	15	18	17
GCTGCTTCGCCTCGAC	alt_5889_new	92	105	98	112	92	65	87	87	105	89
CCTACCCGATATTGGT	alt_5889_new	33	53	39	32	49	21	60	24	56	23
GTGGAGCTGTCTCTCG	alt_5889_new	2	3	9	7	8	8	5	4	7	7
GCGCTCCCGTTACGCC	alt_5889_new	1	3	1	1	6	4	2	1	2	2
TCTGCCTGGCAGCGGT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
ATCGTTTTTCTTCCTA	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GAAGTCCTATGTTGGG	alt_5889_new	42	36	48	38	41	42	43	40	40	42
CGCGTTCAGTGACACG	alt_5889_new	12	15	19	9	14	10	20	10	19	20
CCGGTTATCCATCCTT	alt_5889_new	11	22	8	18	14	16	11	10	25	10
GGAAACCGTCTCTTCT	alt_5889_new	13	26	11	17	27	21	16	21	20	12
TGACATTTTAATACAG	alt_5889_new	17	17	22	13	11	12	21	18	21	12
GTTACGTATTGAGGAG	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GTGAATCAACTGTTTC	alt_5889_new	28	29	35	29	35	21	33	22	40	30
CTGTTTCCTAGGTACG	alt_5889_new	57	83	70	58	75	58	77	67	86	51
GGATTCCAAACAGAGT	alt_5889_new	61	69	71	61	51	60	64	51	40	47
AGTTGAGGACTGACTA	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GTATCTCTGGTAGTGT	alt_5889_new	38	52	45	38	46	43	49	48	44	50
TGGTATGGCCGATTGA	alt_5889_new	6	1	2	2	3	0	2	0	1	2
TCGCACTGTGCGTTTG	alt_5889_new	33	38	24	20	30	17	41	13	33	24
GCGCCATCGCCTAAGT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
CCGCAGGGTGTCCAGC	alt_5889_new	16	15	22	17	34	15	22	24	18	12
CTCCCAGGCCAAGGTT	alt_5889_new	0	9	2	6	4	5	8	2	7	3
CTTTCTCAAGCTCTTC	alt_5889_new	34	47	51	46	34	39	57	47	56	28
GTGGTGGCTGCGTGTG	alt_5889_new	8	6	9	7	5	1	6	6	12	4
TGCATTGGTCCTTTTC	alt_5889_new	21	33	23	25	50	19	29	23	37	24
TGAACGAAATTTCACG	alt_5889_new	0	0	0	0	0	0	0	0	0	0
CATCATTATAGGTGCA	alt_5889_new	13	15	15	9	22	16	21	19	12	10
TCTTGTGTGTACTCGT	alt_5889_new	41	44	53	41	60	46	65	42	59	27
GCGGCTCTCCGGGCAG	alt_5889_new	61	72	62	59	59	48	65	49	65	47
TTGGGAGTCTGTTCGT	alt_5889_new	17	25	14	17	19	12	31	17	19	22
TTGAGGCTGCTGGCGT	alt_5889_new	31	18	32	27	22	28	27	24	27	26
CGGAATAGAATACCCC	alt_5889_new	12	20	12	12	15	13	19	13	9	22
TCTCCATCAAAATTTT	alt_5889_new	50	54	68	43	98	64	59	56	66	51
CCTCATAAGTAAGTTT	alt_5889_new	178	199	226	210	209	154	211	180	221	159
TAGTCAGGGCCTATCG	alt_5889_new	103	142	150	114	131	117	129	121	159	83
TGTTTCCGGCGCAGTC	alt_5889_new	45	54	36	41	50	49	58	48	38	54
GCCGCTCAGGCATTTT	alt_5889_new	20	17	19	8	18	21	23	13	21	18
AATGCTCGCTGTTTTT	alt_5889_new	40	36	41	39	51	53	42	32	35	38
CTCGTACATCCTTCGA	alt_5889_new	1	2	2	5	3	2	1	7	2	1
AGTTGCCTCTGTCATT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GTTCAGCTTAGCTCTC	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GCGCATCTCAGGCCTC	alt_5889_new	54	51	62	55	50	54	59	34	55	40
GGCCGGACAACCTCTC	alt_5889_new	134	144	151	130	93	114	144	151	123	116
GCGATTCTCGGTATCG	alt_5889_new	0	0	0	0	0	0	0	0	0	0
TTGTGGTTTAATGAAC	alt_5889_new	54	76	57	54	53	49	76	33	87	51
GAAATATGGTTGGATA	alt_5889_new	24	15	23	18	24	26	17	13	25	14
CGCAGGTACGCTGTCA	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GGTTGGCTTGCAGGGT	alt_5889_new	89	86	97	81	102	84	98	62	106	88
CGGTTACTACGGCCTC	alt_5889_new	33	45	27	36	29	27	47	32	37	32
AGTCCAACACGCACTA	alt_5889_new	25	36	35	33	40	20	32	25	47	28
ATAGGCTAGCTGGGCA	alt_5889_new	21	44	35	25	23	28	38	19	28	35
GGCCTGGTAAGTAGTC	alt_5889_new	33	42	54	67	46	35	28	28	38	38
ATGGATTTTTCCTGGT	alt_5889_new	43	73	57	58	51	63	52	44	46	45
TGGCCATCTAGAGAAA	alt_5889_new	0	0	0	0	0	0	0	0	0	0
AGCAAGGATGCTTTCT	alt_5889_new	8	7	7	7	6	6	10	7	7	6
CTCATACACTCGCATG	alt_5889_new	0	8	3	0	5	2	8	1	1	2
AGCGGGCCTTGGCCGT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GGAACGCTGCTTGGCA	alt_5889_new	4	6	8	14	9	8	5	12	12	6
AGATACCTTATCAACA	alt_5889_new	22	20	30	21	29	24	34	23	26	21
TGTTCCTGTATTAATC	alt_5889_new	51	60	64	55	65	51	76	44	54	52
CGAAAAATGTCTTATA	alt_5889_new	226	252	229	228	222	214	243	187	263	218
GCATAACTTCTCAAGC	alt_5889_new	18	31	21	32	26	18	34	16	33	24
CATCCATTCAGGGTTT	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GGTGCGCACAGTGACG	alt_5889_new	102	128	140	108	130	124	167	106	145	95
AGTCGACTTTAATTGT	alt_5889_new	77	81	65	54	73	60	77	53	78	67
CTCGGCAACGGAATGC	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GCTCGAATTATGTGAC	alt_5889_new	0	0	0	0	0	0	0	0	0	0
CGAAGTCGCTGTGTAT	alt_5889_new	18	31	24	26	37	33	44	26	22	18
TCAAAATGACGCCCCA	alt_5889_new	28	12	23	34	25	27	23	25	21	22
GGTGTTTGCGCTACTA	alt_5889_new	193	313	232	214	312	177	341	198	329	222
TCAGGTCTGGATGTCC	alt_5889_new	125	114	116	88	115	109	120	98	146	104
CACGAACCCCTTAGTG	alt_5889_new	0	0	0	0	0	0	0	0	0	0
TTGTATTTCTTGATGA	alt_5889_new	0	0	0	0	0	0	0	0	0	0
GACTACTATTATACTA	alt_5889_new	8	7	11	10	15	12	13	20	24	13
GGTTTACAGATATAGT	alt_5889_new	1	1	0	0	1	0	3	0	1	0
CCTTACGTGGTCTCAC	alt_5889_new	10	14	9	8	13	2	14	8	16	7
TTCTAGCGCCCATACA	alt_5889_new	5	3	5	2	5	4	6	6	4	2
CCTTCGGAATGCTCCC	alt_5889_new	1	2	5	2	6	2	2	5	8	0
ACGTGAAGGAGTAATT	alt_5889_new	14	22	26	10	15	13	10	14	19	8
CCCAAAGCTTTGACAT	alt_5889_new	52	104	109	86	130	69	145	64	141	65
CTAGTCCATCTTGACA	alt_5889_new	0	0	1	1	0	0	0	1	0	3
TGATGTTTCGCCATTT	alt_5889_new	56	53	71	52	68	54	42	58	57	48
CGTTCTGCTATTTCAT	alt_5889_new	14	13	19	22	11	12	11	14	12	17
TATCTCGAGGTTTCTA	alt_5889_new	6	6	12	9	18	20	7	10	17	7
ATCGGCAATGGTTTTT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTAGTTCTTAGCG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CTAACTTACAGCTAGG	ref_3388_reverse	289	136	298	276	150	233	155	281	177	229
CGTGCCAACATGTCCT	ref_3388_reverse	11	3	12	14	7	6	4	9	4	13
GTTAGAACGTGGGTTC	ref_3388_reverse	45	35	64	44	36	44	14	44	35	34
GTGTATGCGTATAACG	ref_3388_reverse	10	6	24	11	9	14	3	12	8	16
CTTTGGCGTGTTATTG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CAGCAGTCATCAACTC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTGGTTTCGTCCT	ref_3388_reverse	183	96	254	176	121	194	119	176	136	151
GCGCAGGCAACGTTGC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCAGCCACTCGTTTTA	ref_3388_reverse	1	4	4	3	8	0	4	3	3	2
AAAGGGGGGTACATTG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCTCCTTTTACTC	ref_3388_reverse	31	22	45	30	25	32	18	33	17	28
ATGGGGGCCCGCCCGG	ref_3388_reverse	183	98	205	179	86	179	87	157	97	131
TTAACATAATACCGTG	ref_3388_reverse	28	25	42	27	14	26	15	36	19	32
CATGTTCCAGACCGGT	ref_3388_reverse	7	5	6	9	6	5	10	8	11	6
TCGAAATTTATCCTTC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TCTAATTGCGATAATT	ref_3388_reverse	21	17	32	31	19	21	23	30	12	30
TAGTATGAAATGAGTC	ref_3388_reverse	7	10	5	5	16	2	10	5	9	0
CCTGGTTCCACTAACC	ref_3388_reverse	35	29	54	36	39	49	37	26	33	33
ATTTAGATCATACCGG	ref_3388_reverse	25	11	35	32	23	38	18	30	22	18
AGCTTACTTTTCCTTG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CAGGTATTTGACATAT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCTTAGTTACCAGCCT	ref_3388_reverse	12	5	16	18	6	11	6	7	5	10
CAGGGAATTTATAATG	ref_3388_reverse	35	9	29	29	11	47	17	28	16	34
GTTGCTACCGGAGGTG	ref_3388_reverse	167	81	174	154	107	142	89	158	89	157
TACATGCAGTTCCGAT	ref_3388_reverse	18	12	25	19	10	18	12	20	11	13
AGCGATTGGATTAGAA	ref_3388_reverse	41	18	64	54	26	41	22	43	23	35
CTTACGGGGTCTAGTA	ref_3388_reverse	53	26	74	65	52	55	33	48	35	49
TTATGAAGTCGACGGC	ref_3388_reverse	292	209	413	332	215	298	224	276	237	264
TGATCAATCAGGTCGG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTACATTACGTTG	ref_3388_reverse	265	135	286	260	141	235	178	239	204	234
GGTGATGGGGCGATTC	ref_3388_reverse	17	10	38	17	17	24	14	33	17	24
TTGGGACTTTTTTCTA	ref_3388_reverse	6	11	8	2	3	7	4	5	6	5
TGCTGATCTTTGCGCT	ref_3388_reverse	3	1	4	2	0	2	2	1	2	2
CCTTAGAATTTGTGCG	ref_3388_reverse	172	84	191	170	100	150	99	142	116	121
TGGTGTCCTAGAGCGG	ref_3388_reverse	47	27	54	41	20	39	25	40	29	42
GCTTTACGGCAGTATT	ref_3388_reverse	38	17	39	35	25	38	17	37	21	35
TCCCTTCTCTAATTGC	ref_3388_reverse	36	11	24	21	19	24	20	19	20	24
TGTTTCGCCTGGAAAG	ref_3388_reverse	19	14	33	21	12	27	12	20	14	16
ATCTCTCTGGTCGTGC	ref_3388_reverse	54	46	64	72	58	59	40	53	45	60
GTCGGGTCGTGCTACT	ref_3388_reverse	5	9	5	0	13	1	33	4	17	2
TACGACGCCCGTACTG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTCAGTAGTCAC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ATAGGGGTCCTAATGC	ref_3388_reverse	132	65	137	112	84	120	83	114	69	123
TCGTGCGGACCACACG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ACATCAAGGCCTCTTT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GGTGACTAGGCCACTC	ref_3388_reverse	17	65	28	25	63	15	69	13	66	16
CAGACAGCGTGACAAT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTTCCTATGATAT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCGCTCACATTC	ref_3388_reverse	24	10	12	14	6	16	8	25	13	16
AATCGCGACGTTCGTG	ref_3388_reverse	83	43	103	83	69	80	57	98	38	75
CTAATAAATCTTGCAA	ref_3388_reverse	36	24	37	40	26	28	18	39	26	44
TCGTATACAAGGGGGC	ref_3388_reverse	39	8	26	27	13	29	22	34	14	37
TGTATGGTTTATACTG	ref_3388_reverse	24	20	35	31	31	28	21	22	26	27
CCCTCTAATATCATTC	ref_3388_reverse	43	18	29	43	21	31	20	39	15	32
ACGTTAAATGTTTTAA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTCGTCGTAAGCT	ref_3388_reverse	155	99	164	157	103	145	103	146	103	127
TTTCCGACTTAACCCT	ref_3388_reverse	423	263	481	440	256	414	278	389	300	333
TCTGATTTGTTTCATG	ref_3388_reverse	57	40	72	40	35	36	50	59	48	30
CTCCGCATATTTGAGT	ref_3388_reverse	73	36	84	78	37	66	65	59	38	61
TAAGAGTCTCTTCCGT	ref_3388_reverse	2	4	7	6	0	6	4	6	5	7
ACGAGAAAATTTAGCA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCGGTTAACGACA	ref_3388_reverse	39	46	54	45	44	43	42	55	43	50
ATGCAGGGTGAGCAGC	ref_3388_reverse	61	48	73	61	46	64	41	64	45	59
GCTCTCTCACAAGGTA	ref_3388_reverse	363	199	492	460	248	358	222	391	228	376
TTTTTTGCAAACCTCT	ref_3388_reverse	75	31	105	80	40	60	48	64	45	55
GTTTGTTCTCTCCATT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCTTTCGGATCGA	ref_3388_reverse	16	3	19	10	17	13	14	15	12	15
GAGATACGACAAGCTT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGTGATTGGCTAG	ref_3388_reverse	62	37	78	70	43	57	50	51	51	57
TAATGCTATCCTTCCC	ref_3388_reverse	63	23	84	65	36	56	34	50	38	62
TCACAAACAGAAGGCG	ref_3388_reverse	101	38	102	108	48	74	54	85	57	52
CTTTTACACCTGCACG	ref_3388_reverse	4	3	14	6	9	9	6	9	7	10
TGCAAAACGTGTGTCA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTTAATTTTGCGG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCACAATTTGCTGGAT	ref_3388_reverse	15	2	13	12	10	15	10	16	14	11
TAAATTCCCTCCCTCA	ref_3388_reverse	7	3	10	7	8	9	6	12	8	12
TGACTATATTACGGGT	ref_3388_reverse	29	22	39	35	31	29	30	31	29	27
TTGCGGGCCATGGAGT	ref_3388_reverse	56	25	72	56	25	52	29	40	34	49
GGGTTACGTGAAACAC	ref_3388_reverse	91	72	120	99	32	84	54	82	67	80
AATCGGGATATGCCAA	ref_3388_reverse	81	41	111	86	49	82	72	77	63	68
TCGCACAATCTGCGGC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCTATCGGGTGGCGCT	ref_3388_reverse	8	10	18	16	10	21	22	15	20	12
CCGGGACCATCAAGCA	ref_3388_reverse	12	14	26	25	8	17	12	9	18	9
CGAGTTGTGACGAGGT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTGGACCCAATCCCAT	ref_3388_reverse	30	20	41	30	17	32	15	18	17	34
ATTGAATTTGCTCGCT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CACTGCGCCCTCTGCT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGGTGGCCAGTGA	ref_3388_reverse	98	65	129	94	63	93	61	93	62	75
ATGTGGCAGGTGCTTC	ref_3388_reverse	35	25	44	42	27	36	29	48	43	45
GGTGTTGCCGAAGCTT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCCCTGCGTCTCT	ref_3388_reverse	8	4	15	10	5	12	7	4	5	5
GCTCATTCTAGAACAG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTCTATTTTTCTT	ref_3388_reverse	108	60	129	136	65	114	56	122	72	99
ATGAGTTCATCTTGAT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGGCCAGCATCCT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGCTGTGTCCTAG	ref_3388_reverse	34	23	59	45	36	44	21	26	21	28
ATTCTTACTTCCAGAT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTCAACAGCAATG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAGAATGACTGTC	ref_3388_reverse	15	20	25	34	11	28	16	16	16	17
CGTGGTTTATCCTGCT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCATTATGGAGTACTA	ref_3388_reverse	69	45	77	68	37	82	48	70	39	67
CGGTTCAGCCACAGCG	ref_3388_reverse	40	16	42	24	27	17	16	30	13	18
ATATCGGGCTGTACGT	ref_3388_reverse	198	94	252	194	124	181	123	164	98	162
GCGATTTTTTCTCCTT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTTCGTGGAGTCC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAAATCTTCGACT	ref_3388_reverse	56	47	75	84	48	60	57	70	52	55
GTCTAGGGCCGGTACT	ref_3388_reverse	16	19	36	28	26	33	15	24	18	20
CTGTAGTTCCGTGTTT	ref_3388_reverse	29	6	32	20	21	18	13	19	20	30
TATATCCTAAAGTTTG	ref_3388_reverse	58	23	61	44	27	43	44	48	30	53
ACAGTATTTGAGCTTC	ref_3388_reverse	53	28	68	50	26	43	29	56	32	44
TCATTCGTCGATATCG	ref_3388_reverse	116	60	114	123	49	106	72	112	67	97
ATATATCGGTGTTATG	ref_3388_reverse	56	46	82	55	38	65	36	49	30	48
TTCGTGCAACCTGCCC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TCGTATTCCCCGCGGC	ref_3388_reverse	23	30	11	12	27	10	28	9	25	12
CACATTTCGGCTTATG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CGATGCACTTACGTTT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTACAGGTAGGTGGCT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CAATTAAGTCCACTTG	ref_3388_reverse	120	80	131	112	65	123	79	110	83	117
TCGTGGGTAACGGTTT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTGGTGCCAAACT	ref_3388_reverse	5	2	1	2	4	2	4	1	6	2
TTCAGTAGAGATGATA	ref_3388_reverse	262	136	343	268	165	246	167	235	164	236
GTCCTTCCGGTTAGGG	ref_3388_reverse	1	0	0	0	0	1	3	1	1	2
ATTGGGGGTCCGGTAA	ref_3388_reverse	43	31	59	49	27	73	29	55	37	61
CCCTCGGGGCGTTATA	ref_3388_reverse	119	83	168	145	97	136	109	117	119	145
GCTAGGCTGGTATTTA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTTGCAAGCTCGA	ref_3388_reverse	10	9	11	12	8	9	7	8	3	10
TATGTATCTGGCAGGT	ref_3388_reverse	12	15	26	17	10	11	16	22	9	16
TAAGTTTGTGCTGAGC	ref_3388_reverse	77	51	91	118	54	100	58	77	62	79
TAGGGCCACTGCTTGC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CTCAAGGTCGACGGAA	ref_3388_reverse	77	46	82	62	51	54	41	61	31	63
CAATCGTCACACGTAC	ref_3388_reverse	61	27	50	48	34	62	30	47	41	59
TTAAGTTCTTCTATAT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTAAACAGGCACA	ref_3388_reverse	190	114	218	186	158	165	128	192	113	145
CTGTTTCCCGATTGCA	ref_3388_reverse	129	83	171	120	79	125	90	105	67	108
CTTGGTTGTCGCTCCG	ref_3388_reverse	41	19	33	38	25	26	20	43	24	43
AAAGCGTATCCAGACT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
AAGTGCGCGGTCTCTT	ref_3388_reverse	15	12	15	15	10	11	4	13	9	5
GGATCGTACTCTATGA	ref_3388_reverse	26	16	41	32	23	31	18	23	15	27
CTTTCACTGTTCACAA	ref_3388_reverse	83	34	83	84	60	70	55	59	44	55
TCTTTGGGGCATCTAA	ref_3388_reverse	26	18	40	22	23	22	40	26	31	34
CTTGCTTCTTAGTAAC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTCGTCTTGGATA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GAACGTGAAGTTCATA	ref_3388_reverse	16	8	6	7	5	14	7	10	10	12
CGCTATCACTGAAATT	ref_3388_reverse	36	12	40	30	10	34	20	29	10	35
TCGTGTTTTTTTTGGA	ref_3388_reverse	94	55	113	85	52	100	56	96	65	84
TGTCGACCCGATATAA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCGTTGCGGCTAA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCTTTCTGTGCTT	ref_3388_reverse	118	63	126	126	77	118	60	110	59	98
TACCGGCATATCAAAG	ref_3388_reverse	52	26	77	69	50	57	34	50	47	47
TTCAAGGGGTTCTTCT	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTCGGTAACAGA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TAACCTGACCGAATTC	ref_3388_reverse	10	0	3	5	10	4	1	9	4	9
TGCAATAGAGCCTCGG	ref_3388_reverse	78	67	137	101	57	91	62	102	66	100
TCGCCTCTTTGCTTAA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGTAGTTCGTGTT	ref_3388_reverse	10	7	11	10	4	7	3	9	6	10
GTCTCCGGGGCAGTTG	ref_3388_reverse	9	2	8	3	8	3	1	7	8	6
AAACTCCGCGGGAATG	ref_3388_reverse	22	12	22	22	12	23	17	19	11	12
ATGTTGCAAAACATCC	ref_3388_reverse	6	6	11	12	5	5	5	7	5	6
ATGAGCCAACTTCACC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTTATGGCGCCCAGTG	ref_3388_reverse	11	12	15	9	17	18	13	11	7	11
TTTGCGTCAGTGTCCG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCCAGAACGGCTA	ref_3388_reverse	22	12	30	25	25	38	14	21	20	25
CAACAGATTGTCAGCC	ref_3388_reverse	86	48	126	91	65	85	70	91	67	76
TGTCGTTAAACTGCGA	ref_3388_reverse	81	30	40	61	42	49	29	58	48	48
CGCCGTACAGTTAGTC	ref_3388_reverse	39	28	57	46	27	33	25	58	27	49
TCTAGTCTGTCTACGA	ref_3388_reverse	8	7	10	8	2	3	7	5	4	1
GAGGCCTGGTTACCCA	ref_3388_reverse	45	29	49	45	38	54	29	45	32	43
CAGACAAGCCGGACTT	ref_3388_reverse	30	7	16	18	8	13	9	15	6	12
AAACGTTTGTATTGGA	ref_3388_reverse	51	22	52	42	37	49	30	49	27	40
TTTCTGTTTCGTGGCG	ref_3388_reverse	20	9	27	13	16	15	14	20	12	19
GTAAACCCGTGCTTAA	ref_3388_reverse	73	63	93	68	46	71	45	76	57	71
TTAGTGCATCGCCGCT	ref_3388_reverse	18	8	20	16	11	21	11	11	16	14
ATGTGGGCGGATTAGT	ref_3388_reverse	25	24	25	20	26	10	14	25	11	18
GTGTTTTGTACTACCG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAGCAGCACTTTA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
GTCTATTAGTCTTCTC	ref_3388_reverse	163	114	198	203	118	152	105	139	156	147
GTTTGATGGTCTTCTC	ref_3388_reverse	22	13	25	23	11	9	11	22	6	20
AGTGGGTCAACTATGT	ref_3388_reverse	7	29	20	9	29	5	26	9	29	12
AGGCGCTTTCCGCCCT	ref_3388_reverse	21	15	20	22	15	20	15	20	11	21
ACGTTGACGTTACCTC	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CGGTACATCGAGGAGA	ref_3388_reverse	242	103	303	278	135	227	116	210	169	208
AAGCAGCTCAAGATGA	ref_3388_reverse	14	10	27	20	20	21	15	19	15	22
TGACTTTCCCCACTGC	ref_3388_reverse	127	91	150	135	83	128	78	105	92	113
TAAGGGCCCTTGAAGC	ref_3388_reverse	44	17	32	36	17	40	28	34	25	37
TTTGAAGGACCGTGAT	ref_3388_reverse	12	10	21	15	8	9	10	10	9	17
TTCTAGCTGATGCTGG	ref_3388_reverse	80	58	100	68	40	98	58	57	47	67
AGATTACGATCAACTC	ref_3388_reverse	50	35	63	52	38	59	38	67	39	47
GTCAAGGACGCCATGG	ref_3388_reverse	41	19	47	36	16	47	20	48	19	35
TGGTACCTACTTTGTA	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
ACAAATATGGTTGTTG	ref_3388_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGCTGTATATGTA	alt_2246_missing	4	1	4	1	5	2	2	4	2	1
CCGTTGTGGGTATGCT	ref_2246_missing	0	5	5	3	0	8	7	0	2	1
TTGATGCTGGTATCCC	alt_2246_missing	80	97	83	67	97	56	92	66	78	53
TATCTGCCCCCGCTTC	alt_2246_missing	69	90	70	91	79	70	92	80	88	59
GTCGGACCTGATGACT	alt_2246_missing	21	29	18	18	25	17	36	22	27	13
GCATAGCCAGTGATAC	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
CGAGCAACTTTCATCG	alt_2246_missing	14	5	6	12	14	7	14	5	14	5
TTCGAAAATGTCCCGA	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
TACAAATCAACTTAGC	alt_2246_missing	82	106	89	76	122	79	115	76	128	65
ACTCCGGGCATATCCG	alt_2246_missing	4	10	6	8	4	4	3	0	16	5
ACAAGTGTTCTTTAAT	alt_2246_missing	35	58	31	48	53	33	62	29	55	40
ACCTTCCAAACGTCCC	alt_2246_missing	47	39	40	34	39	39	44	38	46	35
TTCTTATGCGGCATGG	alt_2246_missing	24	22	26	17	31	21	30	20	27	27
TTTACAGTTTGACCCT	ref_2246_missing	17	29	32	19	45	25	39	14	37	26
ACTCTCTCGTTGGATA	alt_2246_missing	20	8	7	13	11	10	9	12	11	8
CAGCAAGGTTCAGAGC	alt_2246_missing	62	70	45	61	49	42	57	52	55	39
AATCTTGGACGGGAGG	alt_2246_missing	41	43	53	40	72	49	56	52	53	35
TTGATCAATGTTGTAG	alt_2246_missing	50	43	46	45	59	52	58	26	77	38
TCAGATATGTAGTTAC	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
AGATGTTTTGTCCTAA	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
TTTGATACGCACTTTT	alt_2246_missing	25	30	37	27	31	22	49	24	36	26
GGTGCCTACTTACATC	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
TACACGGTTATCTTCT	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
GTTACATGTGGTGCCG	alt_2246_missing	67	77	77	60	97	88	100	63	87	53
CATGAGCTATTGGCGA	alt_2246_missing	3	2	2	6	3	4	4	2	6	6
CAGGTTTTATTACAGT	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
TCGGCCGGAATTGTAG	alt_2246_missing	19	45	28	34	35	26	36	19	51	16
TATCTTACATGGATCT	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
TATCCTCAAGTAGGAC	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
CCATCACCGTGCATGT	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
CTCAACCCTGTCGTTT	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
GTTGGCGCCGTTTTAG	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
ACATACGAGGGTCATA	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
ATTGTGTTCTAGGGCA	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
CCTTAGTACAGCAATG	ref_2246_missing	20	52	27	36	42	32	60	20	51	19
CAACGTTTGTTTTAGC	alt_2246_missing	49	72	70	45	63	54	71	45	78	53
GAGCCGTTCGATTTTC	alt_2246_missing	54	57	50	56	67	42	89	42	76	40
TAGCTGGAGCTTTCTT	alt_2246_missing	49	61	67	62	62	60	55	46	72	33
CGACCGTGGGAGCGAG	alt_2246_missing	7	5	3	4	10	4	2	5	6	2
TCCATGCGTTTGGCAA	alt_2246_missing	14	14	25	13	15	11	16	16	22	12
CTAAAGAACAGTTTGT	alt_2246_missing	5	24	10	14	17	7	22	15	15	17
CTTGCGGAAATCTCTT	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
CGGGGCTAGGTTTATT	alt_2246_missing	16	29	23	19	21	13	29	18	24	22
TCATGTGCGCTTCTGT	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
CAGAAATCAGCACTGC	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
GTTTGGGCCTTCGACG	alt_2246_missing	16	21	17	16	44	19	19	19	30	15
TTAATTGTGGCGTGGT	alt_2246_missing	18	21	29	16	21	17	21	19	35	22
CTTTTCGCTTCCTAAC	ref_2246_missing	25	59	36	28	72	31	62	42	75	23
ATTTTTCAGTCGCACT	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
ACGGTTTAGGACTCGT	alt_2246_missing	96	126	113	94	146	95	125	83	157	93
CTCAGTTACGTCCAGT	alt_2246_missing	33	47	39	39	49	31	36	24	50	37
GCCAGTTGCTGCCTCC	alt_2246_missing	3	10	11	6	8	4	7	4	7	4
GAAGTTTACACACGCG	alt_2246_missing	4	20	13	11	15	14	18	9	6	10
AAGGGTTCATTACGAC	alt_2246_missing	30	44	22	42	49	31	53	37	41	25
CCCCGCGGTGTATTGG	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
CTCAAACATGGGGAAG	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
TTTTGCAAGTCCCTTA	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
GGTGCGAATTCGGAGA	alt_2246_missing	34	39	48	40	39	45	37	50	33	30
GCTATGTTGTATAAGA	alt_2246_missing	58	65	58	40	39	49	64	36	64	46
TCTTGTCACTGCCATT	alt_2246_missing	32	49	59	44	44	30	70	38	72	45
ACTGAATCATGATAAC	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
ATGTGTATATTTACAG	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
GTCACTTTGTTTCCTC	alt_2246_missing	0	0	0	0	0	0	0	0	0	0
CCGTGGCCGTGGTATG	alt_2246_missing	11	21	20	16	17	9	26	12	27	11
CAGTCCAAATCGATGG	alt_2246_missing	7	10	11	1	13	7	12	7	13	9
ATAGCTTTTTCCTTTC	alt_2246_missing	54	73	86	73	73	81	93	69	76	78
CTTTCCTGATATCACG	alt_2246_missing	241	285	319	235	269	239	309	262	316	224
CTCTATTTACGCGGCA	alt_2246_missing	23	28	12	12	20	16	28	21	27	25
ATTTCAGTTGTTTTTG	alt_2246_missing	8	4	3	5	5	2	6	4	6	8
GAGGCCCAATTCCTCC	alt_2246_missing	42	19	52	32	39	43	38	33	31	26
TTACGCATGGGTTTCA	alt_2246_missing	9	10	18	8	13	10	13	9	16	7
ATAGGCTGCGGAGGGC	alt_461_reverse	7	6	12	4	4	12	8	8	7	9
CTCAACAGAGGGCGAA	alt_461_reverse	71	49	77	71	47	73	33	78	56	54
AGTTCTCGTTAGAATC	alt_461_reverse	34	23	26	28	19	21	19	28	15	23
GGTGCGACCTGTTGTC	alt_461_reverse	26	30	27	27	30	24	24	25	29	22
GTCTGCCCCTAAGCTT	alt_461_reverse	51	18	77	52	32	67	35	59	27	48
GGTTACCTTCTAACCT	alt_461_reverse	39	19	59	36	29	44	35	51	27	35
CTTTCTGATCTTAAAG	alt_461_reverse	62	40	50	64	48	63	45	57	51	45
TAAGGTGTCCTTCCCT	alt_461_reverse	11	4	11	12	3	13	9	17	7	12
AAAACGAAAGTGTTTG	alt_461_reverse	28	10	20	35	17	31	16	21	10	22
TAGTCACATCGCTTTC	alt_461_reverse	51	44	54	43	36	56	27	56	31	51
ATTGTCGGGCTTTTCG	alt_461_reverse	9	7	21	22	7	13	5	11	13	13
AATTTCACGGTAAATT	alt_461_reverse	20	14	36	30	20	19	15	29	18	27
CCAGCAACGGCCCTGC	alt_461_reverse	40	53	52	74	61	35	80	50	73	36
CTCGGAATGCTGTCCA	alt_461_reverse	65	33	88	66	28	41	46	60	51	62
CAACGTACCCTCTGAT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTTTGTGCGTTTA	alt_461_reverse	104	135	138	117	141	143	127	114	145	108
ATCTTGTCTAGCAGTG	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
ATTAATACTTAGTTTC	alt_461_reverse	82	35	63	53	30	51	42	60	31	58
CGATTTCCGTTCGTAT	alt_461_reverse	186	100	231	200	100	223	111	192	109	159
GTGATAGCGATCTTTT	alt_461_reverse	45	26	63	44	34	49	23	48	30	40
ATTTTTAGCTGAAGAA	alt_461_reverse	76	39	76	64	45	82	49	100	49	76
CCAGAAGAGATGTTAT	alt_461_reverse	87	42	86	90	41	76	63	62	61	69
ATGTGCGTCGTCATGT	alt_461_reverse	5	4	2	1	2	2	1	0	0	4
TTCACAATGATACATG	alt_461_reverse	50	26	75	70	26	66	39	59	17	52
TTCTCATATTATAGTG	alt_461_reverse	22	11	28	25	20	18	7	18	19	19
CGCAACCAGGGTGTAC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGGCTTTATTTGC	alt_461_reverse	18	16	47	36	16	44	10	26	21	38
CCCTGGTGCTGGATCT	alt_461_reverse	54	36	65	43	34	63	40	52	27	57
TGGCCGCTACCCAATA	alt_461_reverse	4	5	13	15	4	11	9	12	2	6
CCTCCATTATTCTACT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCGTGCTTTTTCG	alt_461_reverse	46	20	47	25	22	36	20	32	16	30
CTCATATCAGTCTTAC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCGGCAAATCCTA	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGCGATTAACAA	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
AATAACGTACAATTAT	alt_461_reverse	351	156	382	336	183	321	192	328	177	290
CCTTTGCCCAACGCTC	alt_461_reverse	20	25	28	27	28	22	22	28	28	20
TAGAATGTGAACACCT	alt_461_reverse	43	22	44	31	20	35	23	18	16	37
ATCTGACATACAGTTA	alt_461_reverse	132	87	159	96	85	112	73	85	79	102
TTTTGATATTTCGGCA	alt_461_reverse	89	60	116	104	44	92	57	101	59	87
GATTCGCGCATGCCGC	alt_461_reverse	113	55	119	111	51	94	56	88	45	86
AGGGTAAGGCGTATTT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
GCACATCCTATGTTCT	alt_461_reverse	207	167	266	225	142	201	138	236	127	229
CTTTTTCGCTGTTTAT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGGCCACGCTATA	alt_461_reverse	52	21	60	50	35	47	28	47	29	40
ACGTATGTTTGCACAA	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CCGGATAGACGGCCTC	alt_461_reverse	42	17	50	47	45	38	32	34	36	26
GTGTCATGCTACGGAC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
TCAATTATGGGCTAGC	ref_461_reverse	0	0	0	0	0	0	0	0	0	0
ATACTTGTTTTGAGAG	alt_461_reverse	36	22	55	45	23	46	15	37	37	42
TACAATAATTCTAGGT	alt_461_reverse	15	11	25	14	8	21	8	18	15	18
TCTTGCTTTATACTCC	alt_461_reverse	7	9	12	13	21	13	5	8	8	17
CACCATAGCCACCGGA	alt_461_reverse	54	19	53	47	24	41	36	42	29	49
ATTTGCACGCATGCGG	alt_461_reverse	59	40	87	68	36	76	40	63	33	51
CTGTGTGTCTCCGATA	alt_461_reverse	9	3	11	5	10	9	3	16	3	8
TGATTCCTTAGGAGAT	alt_461_reverse	39	24	37	47	25	35	22	31	14	38
ATCAGAGTGAATAGGC	alt_461_reverse	14	12	13	13	10	10	8	9	3	18
TCTGTGAATTGAGTAT	alt_461_reverse	66	37	71	54	38	45	35	48	34	49
TGGCAGCTATTATTTG	alt_461_reverse	224	151	309	258	157	263	167	248	180	235
TCTGTTGCAGTGTTTT	alt_461_reverse	68	33	75	53	46	64	36	54	36	64
AGTTTGACTCGGGTAT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCGTGAGATAAAA	alt_461_reverse	64	28	72	55	41	64	30	58	44	43
GAGTTATAGTAGTGCT	alt_461_reverse	63	30	67	68	26	69	50	58	47	55
GCTAAGTTGAAATACC	alt_461_reverse	30	18	68	45	22	29	23	38	38	33
GTGATAAGCCTCCTCA	alt_461_reverse	13	16	21	19	16	14	10	18	21	14
GTTCCGAGTAACTGAT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CTTACTTGTATCGTAG	alt_461_reverse	284	187	336	330	167	267	188	270	185	251
CGGGTTATGGCCCTGT	alt_461_reverse	88	43	93	92	48	99	42	77	50	75
CCTTTGCTAAGGTCTC	alt_461_reverse	26	21	40	30	29	32	31	38	28	15
AAGGATTATTGATAGT	alt_461_reverse	17	21	35	20	12	31	18	22	20	35
TTACCAAAGAGTCTAG	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
TAGACCTACAATTCAG	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTATCTGGCCGTG	alt_461_reverse	121	49	146	148	68	120	80	124	59	121
TAGGTTGTGTACATCA	alt_461_reverse	95	68	121	126	44	111	56	99	76	107
TCCTATAGACTGCCCC	alt_461_reverse	7	14	11	8	5	10	10	4	10	4
AGTTTGTTTTGCCAAT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTTCTTCCCGCTG	alt_461_reverse	38	20	34	29	12	12	14	25	14	25
ACCAGCACATTACTCT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTCGTTGAGGTGA	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTGAGCACAGCTA	alt_461_reverse	16	10	31	24	14	24	9	13	12	10
ATTTGACCCGGATGAC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
TATAATGTGGATTACC	alt_461_reverse	40	21	57	34	18	30	18	31	24	27
CGCCGGACGGGCCCGG	alt_461_reverse	24	15	20	13	12	11	12	23	16	14
AGGAGCGCATCATGGT	alt_461_reverse	21	12	28	13	13	21	10	24	11	22
TCCAGCACTCCGCATC	alt_461_reverse	87	115	107	130	127	94	101	108	116	110
CATCTTGCCTACGTTT	alt_461_reverse	98	51	128	116	50	85	48	153	51	108
GACTTGTATAAGGTTC	alt_461_reverse	18	12	26	21	20	21	13	29	12	13
TTTGGGGCAGGACCTC	alt_461_reverse	19	9	21	21	10	25	9	15	20	14
CTCCGCTTCGTACCTC	alt_461_reverse	158	190	234	191	159	193	187	201	170	146
CGTATTCAGGCGCACT	alt_461_reverse	114	49	127	109	58	111	63	82	61	93
TTATCAACTCGTTGCA	alt_461_reverse	65	31	69	52	50	72	46	61	32	64
GAGGTTGTGTTGTTTA	alt_461_reverse	125	93	169	120	101	132	72	122	71	126
GATAAGGCACATTACC	alt_461_reverse	103	60	113	87	51	93	68	86	49	98
CTATGAGAGTCAAGCT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
GGTACTCATTGGATCA	alt_461_reverse	16	8	29	23	11	18	4	19	12	13
TCGGGTCCATCCGTCA	alt_461_reverse	60	20	55	45	28	44	32	54	19	57
CCTTTCTCAGATATGC	alt_461_reverse	110	77	123	98	90	93	83	101	80	114
GTGCTCGGTATAACCG	alt_461_reverse	19	7	22	21	6	9	9	21	8	9
TGCTGGCAACCTCTAG	alt_461_reverse	15	6	25	20	5	11	4	11	1	13
AGTGTGGATTCTTAAC	alt_461_reverse	46	24	51	63	26	47	46	41	35	49
GTATGATGAGACGCCG	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGGGATTCGCCAG	alt_461_reverse	77	35	86	56	21	60	42	61	44	55
CAATGCCCCCTACTGG	alt_461_reverse	64	43	72	75	40	56	60	65	43	57
CCATTCTACCGTGCTT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CAATCTGAGAGGTGGC	alt_461_reverse	62	33	60	58	27	57	25	47	36	43
TCTAATATCACAGGCG	alt_461_reverse	149	85	195	195	79	154	73	134	98	165
GCTAATCGGTCGCGCC	alt_461_reverse	81	53	105	109	39	100	59	66	63	77
TTTCGGTTACCAGTTG	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGATCCTCTCATC	alt_461_reverse	65	22	61	50	33	82	37	40	33	44
TCAGAGCCTTTTTTCC	alt_461_reverse	65	27	65	83	41	87	36	57	40	74
CTCGTTGCCTTGGGAC	alt_461_reverse	19	13	17	14	15	12	23	17	14	19
AGCACGGTAAGGTTTG	alt_461_reverse	19	12	24	21	7	12	12	18	18	13
AACTAGAATAGCGGTC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CAGATGGACCACCTTT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCTCTCGCTTTTC	alt_461_reverse	29	22	51	45	21	31	23	25	20	23
GTGTGTCTGCCATACA	alt_461_reverse	88	57	100	95	53	83	66	80	68	73
GTCCGTTCCTCTTTCC	alt_461_reverse	70	36	96	70	50	64	49	69	50	68
TGTTAGGATCAGTCGC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCTTTGTCAGTCC	alt_461_reverse	9	5	7	8	6	4	2	8	5	10
TCAGGTCATAATCACG	alt_461_reverse	215	108	272	215	108	238	103	215	140	213
TTAGCCTGCACAAGGT	alt_461_reverse	1	1	0	2	0	3	2	1	0	3
GCATAGGTGCCTACAC	alt_461_reverse	53	31	68	60	26	65	41	60	42	53
ATCATAGGGTTATTAT	alt_461_reverse	66	30	95	89	43	82	33	80	52	77
GCACGACCTGGGATAG	alt_461_reverse	136	59	177	114	85	117	72	165	75	108
GATTTTCATGCACACT	alt_461_reverse	7	5	7	5	9	8	7	7	4	10
CGATGTAGTATACACC	alt_461_reverse	0	2	0	1	0	1	2	2	0	8
ACTTAGCGCACTCACA	alt_461_reverse	18	9	30	17	17	20	13	20	6	36
CGCCGTTGCTTCACGC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTCTCCGCGTCTC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCAACGTAAGCTG	alt_461_reverse	57	28	114	94	29	71	52	75	59	93
TTCGTCCGAATGTAGA	alt_461_reverse	154	79	189	136	86	141	102	134	68	136
ATTATGTATGATGAGT	alt_461_reverse	245	97	269	232	112	276	114	228	131	206
TGGCACCCGGGCGAGA	alt_461_reverse	92	46	116	73	62	76	56	96	58	87
CACGATTTGCTTCTAC	alt_461_reverse	85	58	86	79	43	64	38	105	48	73
CTATATTGGGTTCTCC	alt_461_reverse	1	3	3	2	0	2	0	0	0	3
TTCTAGAAGGGTCGTG	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
TTACAATTGCAGTCTA	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
AATAGACCAACGGGGT	alt_461_reverse	38	9	45	25	18	31	15	14	13	30
CGCTTTGGATTGTCCC	alt_461_reverse	22	15	22	19	23	15	11	15	23	9
ATCTCCGACTTCGCGA	alt_461_reverse	24	16	39	40	9	25	14	32	15	24
AGGGTCCCTTTTAGTG	alt_461_reverse	64	23	99	65	41	73	36	68	42	73
GCTTTACTTTGAAGAT	alt_461_reverse	97	54	133	135	79	104	59	106	68	89
CTCGCTCCGCGTGTAT	alt_461_reverse	22	19	36	32	26	28	16	32	19	22
TTTTATGGTTCTTCTA	alt_461_reverse	29	21	35	24	15	32	18	45	16	24
GTAGGTGCTGATGCAC	alt_461_reverse	42	27	52	30	35	35	33	44	39	34
GCAAAATCTCGTCACT	alt_461_reverse	35	25	34	29	20	33	13	36	21	27
TAATCTCTCCTTTCAC	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
TTTGACTCGGCACGTC	alt_461_reverse	43	16	65	54	11	39	18	41	22	51
AATAGATACACCGCAT	alt_461_reverse	0	0	0	0	0	0	0	0	0	0
CATTCATCTGCATTAT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTCGCTACTCATC	alt_3129_fdr	5	4	7	5	5	14	7	7	8	2
TTGATCTCTTAAGGTG	alt_3129_fdr	49	33	55	43	32	46	40	30	29	45
ATAATACCGCGGTTGT	alt_3129_fdr	14	17	16	14	23	17	14	8	12	10
CTATGACGACTTGGCA	alt_3129_fdr	30	20	40	26	28	21	21	20	20	34
ATTGAGACGGCCTGCT	alt_3129_fdr	44	42	68	56	35	51	42	40	42	49
GTCACAAACTCTGTGT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTACTGGTTCAAGAGC	alt_3129_fdr	40	22	44	26	20	32	29	21	31	34
TGTTCCGCATGACTGC	alt_3129_fdr	46	43	62	75	44	63	46	55	44	62
GGACCCGTATTGGATG	alt_3129_fdr	46	44	58	39	33	52	48	42	35	36
CCTCGATTAGATCGTC	alt_3129_fdr	73	112	106	86	83	89	115	81	89	84
CTCCCCTCCGTGCGCA	alt_3129_fdr	5	5	8	4	12	6	15	8	9	2
GCGTTCACACGTTGTC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTACGCCCAGATGTTC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCGGGGCATGCC	alt_3129_fdr	93	94	141	115	96	105	122	116	84	92
AGACCGACTTTACCTA	alt_3129_fdr	13	16	13	6	22	14	20	27	21	15
AATGTATGGACTGGTT	alt_3129_fdr	64	60	81	62	57	68	45	68	59	61
CCACCGGCACCCGACC	alt_3129_fdr	13	13	15	11	13	13	18	5	19	10
ACTAGAGTTCTACTTG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTTACCACTTAGG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCACTACTCCGA	alt_3129_fdr	24	28	32	41	35	25	52	25	31	24
GATGTTCACATAGAGC	alt_3129_fdr	24	25	37	36	20	24	24	29	19	29
TTTTCAAGCGGGCATC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGCGATCTACAAC	alt_3129_fdr	293	231	371	303	244	315	239	279	285	255
GAAAACCTTCGCTTCC	alt_3129_fdr	88	52	102	85	81	81	70	64	72	72
ATGGAGGGCATACACT	alt_3129_fdr	38	46	31	29	29	30	37	31	39	21
GGGCCGCTTAGTATTT	alt_3129_fdr	37	30	44	45	29	32	29	33	35	27
TGTGATCTCTCAGGAC	alt_3129_fdr	58	42	77	67	52	75	54	65	58	58
TGTCTAGTCTTATAAA	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCTTCTCCTTCTT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTTAGTGGAAGTT	alt_3129_fdr	35	18	39	22	23	24	22	22	23	26
AGGGTCACGCCCAATC	alt_3129_fdr	42	28	33	42	30	24	35	28	31	35
TTTTTGAGACCGAGCA	alt_3129_fdr	10	9	7	6	7	11	8	15	7	7
TAAGAGTCATGAGTAT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCCAGGGCATCAT	alt_3129_fdr	39	22	35	39	16	29	19	26	17	25
GCGCGTAACCTTAGAT	alt_3129_fdr	16	10	18	14	14	10	8	15	16	19
GAGCGGCTCGCTTAGG	ref_3129_fdr	12	8	14	12	6	17	4	9	5	18
CTATAGTTTTGTGCCC	alt_3129_fdr	9	9	10	7	10	11	10	13	7	4
TTTGGTTTATTGGTCA	alt_3129_fdr	83	68	54	72	64	58	73	63	62	68
ATATCTTTGCGATACG	alt_3129_fdr	15	11	25	15	9	18	10	14	9	14
GGGTTCAGTAATGAGT	alt_3129_fdr	56	40	53	57	43	38	43	36	49	36
CAGCTGGTACCGTTTG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTCGACCGAGTT	alt_3129_fdr	39	50	69	34	47	37	54	42	44	34
TATGCATGCAACTGCG	alt_3129_fdr	61	65	88	76	66	77	56	58	75	66
CGAGGCTCCAGAGTTA	alt_3129_fdr	104	89	137	116	83	100	104	84	95	76
GTCACCAGCGGAACTC	alt_3129_fdr	17	20	17	19	24	24	34	16	45	22
GTCATGTCCCAAAGAT	alt_3129_fdr	5	3	4	5	4	6	1	5	7	6
TCCGACTTGTAGTGTT	alt_3129_fdr	9	8	3	11	2	2	8	6	11	6
CACGATTTGCCATATT	alt_3129_fdr	30	30	44	34	30	26	32	31	22	38
GATATTTACCCGATGT	alt_3129_fdr	17	24	35	28	8	35	20	20	15	25
TGATGTCCACGGAGCC	alt_3129_fdr	297	187	396	298	268	306	311	333	282	268
CGTGGTTCGGTTGCCG	alt_3129_fdr	13	23	25	16	16	33	17	17	19	23
CTGCTCCTTCTAGCCC	alt_3129_fdr	66	72	69	94	70	65	64	62	69	57
TTTGATGCAGTTCCGG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAGGTCGCTAGCA	alt_3129_fdr	32	17	32	43	27	24	28	27	19	33
ACAGATATGTTTGGAG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTGATAGCAATT	alt_3129_fdr	69	67	91	78	85	78	76	74	76	60
GGGGTTACCTTCCCGT	alt_3129_fdr	67	67	95	102	57	62	65	80	80	73
TAGTGAGCCTCACAGC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAGTTGCGTCTAG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTCTCGCTAAATT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGCAGACACTTTG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGCGCTAAGTCTT	alt_3129_fdr	33	21	38	36	20	40	26	34	40	32
TTCTTCAATTCTTCGT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGTTCTTGCTGTC	alt_3129_fdr	26	28	27	22	29	22	18	21	29	20
TTTCCCGGTCTAGCTC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCAGCAAAGGCTC	alt_3129_fdr	438	290	488	451	348	382	321	421	321	417
ACACTTCTTTGTATGT	alt_3129_fdr	5	3	1	2	3	4	0	3	0	0
CTCTGCGAAATAAGGT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GATCTTCTGCTATAGT	alt_3129_fdr	13	17	19	18	10	18	21	14	18	18
TGGTTTATAGAGCTTG	alt_3129_fdr	179	174	203	154	128	162	178	118	151	166
ATTCCTCTGCTCGATC	alt_3129_fdr	19	11	26	40	28	26	17	18	14	19
ACCTTGCTTATATTGG	alt_3129_fdr	47	49	71	49	55	66	46	51	55	48
GCACGTAGCACTGTCC	alt_3129_fdr	403	309	475	428	372	378	390	393	385	376
GCCTGCTCTTTACCCA	alt_3129_fdr	113	150	161	157	128	155	124	129	146	113
TTGGTCGTGCCCTTAG	alt_3129_fdr	82	104	97	83	110	59	116	68	107	53
CCATGGTTCCTTTGTT	alt_3129_fdr	38	82	39	31	74	29	85	31	64	27
CCACGGGGCTCTCGAT	alt_3129_fdr	51	30	55	49	43	49	34	39	46	30
TACTTTATGCGGCGCA	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTAACGTGGTCTTTAG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAATAGCCATGTT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGATCCTCATACG	alt_3129_fdr	65	65	73	61	74	71	68	65	70	51
GTGACCGTCTTAGATT	alt_3129_fdr	6	6	4	5	8	10	7	2	3	9
ATTTGTTATCTTTCTC	alt_3129_fdr	89	70	116	135	75	101	82	76	73	94
CGTTACTACGTAGCTA	alt_3129_fdr	30	33	28	39	28	47	42	46	34	34
GAAGGGTTTGTTACAT	alt_3129_fdr	262	156	338	319	186	265	216	287	215	263
ATGTTCCCTGTTTTTT	alt_3129_fdr	51	52	99	68	51	58	55	59	52	58
TTACCACCTGGTCTGC	alt_3129_fdr	26	29	19	27	28	26	31	19	33	37
CAACCCCATGCCTATT	alt_3129_fdr	22	21	28	19	18	25	17	40	22	22
TTGGTGTTCGGAATCC	alt_3129_fdr	48	36	50	41	35	35	46	30	41	35
TGGCTAACGGGGGATT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
AAATTCTTCTTGTTTC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
ACGCAACCTCTATTCC	alt_3129_fdr	27	19	36	30	28	29	29	38	30	27
GTAAATTTACGTAAAT	alt_3129_fdr	57	55	57	58	39	50	41	45	42	44
TTCGACCCTCCCCGCT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGCGAGTTCTGGG	alt_3129_fdr	87	102	118	110	75	107	95	98	93	89
CATAATCTCGGTTTGC	alt_3129_fdr	99	63	112	100	71	84	66	91	77	88
CATCTCTTTTAATGGC	alt_3129_fdr	13	4	15	16	9	14	3	12	12	12
GGTTTTGCATTGAGGC	alt_3129_fdr	42	25	38	27	34	31	36	28	26	32
CAGTATTTGGACATGC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GACCACATGACTTGTG	alt_3129_fdr	12	14	21	14	20	22	17	15	13	10
TTCACGCTGCCTCGCA	alt_3129_fdr	4	4	1	0	4	1	0	3	0	0
TCTATTGTAACTCAAC	alt_3129_fdr	39	45	42	60	41	33	37	40	46	45
CAGTAATTATAGCGTT	alt_3129_fdr	8	16	14	13	7	11	9	12	13	11
GGCATGTCATCTTGCA	alt_3129_fdr	47	28	56	52	25	46	34	45	39	43
ATACTCCAATTATGTG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
CAGGGGACTGACTTTG	alt_3129_fdr	64	82	122	74	81	80	69	83	80	84
GGTTCGTGGTAGGGCA	alt_3129_fdr	4	8	12	20	9	5	9	11	3	4
GGTCGCTTTATGAGCC	alt_3129_fdr	12	7	8	10	7	12	14	15	6	7
TTAATGCGTGGTTACA	alt_3129_fdr	63	34	72	41	34	55	41	68	50	63
AGATACTATGTGGGCT	alt_3129_fdr	13	8	19	16	7	9	11	11	7	11
TAGCTCTTGCATCAAG	alt_3129_fdr	73	88	101	42	84	84	67	77	74	72
TTGCAACGTCTAAGCT	alt_3129_fdr	19	25	30	19	18	22	22	23	16	12
ACTAGCTTACTGCGCT	alt_3129_fdr	2	2	4	7	5	0	7	2	2	6
AAATTATTCTACTGCT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TAACTTCTATCTTGGT	alt_3129_fdr	10	6	6	8	2	8	10	7	13	8
CGTTCTTGGTACCGCC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTTCTTTCAGCTA	alt_3129_fdr	35	32	40	30	30	33	34	31	37	30
TGTGTTTATGTACTAG	alt_3129_fdr	58	67	82	59	63	62	70	49	82	53
GTGCAGGCGGCTGGGG	alt_3129_fdr	30	18	32	24	20	22	24	23	20	20
CTTGGCATCCTTTCCA	alt_3129_fdr	46	46	50	62	46	50	42	56	33	34
CCGTCGCATACCTGGC	alt_3129_fdr	163	122	190	151	139	145	131	162	119	140
CATCTAGGTCGGCAAT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GGACATGGCTATCGCG	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCGCGGACTTCCC	alt_3129_fdr	42	19	28	45	35	26	24	30	28	39
GAACTGTTATAGTACG	alt_3129_fdr	60	53	61	58	44	41	46	43	52	61
ATCCGACGCAGACTTC	alt_3129_fdr	74	49	87	94	65	79	56	74	46	71
AATCCCCTTGATCCAT	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
TCATATTAATTTACGA	alt_3129_fdr	36	33	52	47	39	30	42	38	24	45
CCGTTTCCTCGTTGGG	alt_3129_fdr	37	23	38	38	27	43	24	35	28	40
CCGTGAATAGGGTCAT	alt_3129_fdr	6	7	8	7	8	10	14	4	8	1
GTGACATCTCAACACG	alt_3129_fdr	8	10	13	7	10	6	5	7	17	14
GCGTGTAGATAGCTGA	alt_3129_fdr	16	18	29	15	8	18	10	19	9	5
TGTCGTTTCTATTGAT	alt_3129_fdr	75	52	74	92	59	79	62	59	69	75
CCATGCTCCTTGGGAT	alt_3129_fdr	6	6	15	11	9	10	7	4	10	9
ATGTTCTGTCTCACGG	alt_3129_fdr	2	2	3	3	0	2	0	1	0	1
GATCTTGATGTGCGAC	alt_3129_fdr	0	0	0	0	0	0	0	0	0	0
GTACTGGTAACTGATT	alt_3129_fdr	53	50	46	55	48	59	62	46	54	49
GCCTAGTGCTCCCTAT	alt_3129_fdr	2	0	1	2	5	0	4	0	1	2
CTACACCCACCAAATC	alt_3129_fdr	14	7	16	19	5	10	13	8	13	5
GAGTCGGCCATTACCT	alt_1924_fdr	63	86	94	78	76	62	80	67	73	77
TGGTTATCTGGAGGCC	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTTCACATCATG	alt_1924_fdr	21	21	26	21	30	21	20	23	25	18
AAAACCAGTTCGTTAC	alt_1924_fdr	6	5	9	7	3	5	11	6	3	4
TGCTCCCGGGACTCGT	alt_1924_fdr	112	155	131	127	146	116	161	93	149	120
TCCCCTGCGAGATGTG	alt_1924_fdr	58	74	96	77	74	63	76	74	78	42
TCGGCTGGCAGGGCAG	alt_1924_fdr	22	18	32	22	21	35	25	23	22	19
AGCGAAGCTGAAGTTG	alt_1924_fdr	20	16	17	25	15	23	32	21	30	21
GATCTCTCGTATTTTT	alt_1924_fdr	90	71	103	83	82	86	93	78	95	87
CGTGTGGGAATTAGGA	ref_1924_fdr	45	30	52	42	35	41	41	48	65	60
CAAATCTGTTATGTGC	ref_1924_fdr	20	16	18	11	14	13	14	12	21	9
TTACATTGGTTAGCGA	alt_1924_fdr	21	12	21	11	7	15	15	19	16	13
GCTCCCTGCAAGATGA	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
CTGATTGATTGGGATG	alt_1924_fdr	48	50	68	46	70	33	57	47	54	37
GCTTAAGCCTTTTCAA	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
GACACCCCCTCTTGCA	alt_1924_fdr	5	23	4	7	22	4	15	6	22	6
AGGGGGCATGATTCCT	alt_1924_fdr	42	27	39	26	29	30	31	22	28	35
GCTTTTGGCGAGGTCA	alt_1924_fdr	14	22	27	8	16	19	21	18	21	10
CTAGTCTCCCTGTGGC	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
TATTCCCCCATGCGCC	alt_1924_fdr	224	347	262	228	314	232	330	208	352	200
CTCAAACGGGATGTTT	alt_1924_fdr	77	86	103	69	73	71	71	67	79	75
CGCCTGCTCTCTACGC	alt_1924_fdr	23	24	26	16	12	14	31	18	31	17
GATAGCGGCTCGTGGA	alt_1924_fdr	69	40	62	50	41	51	37	49	51	40
GGATGGTCGTTCTGTT	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGACTCTATCCCA	alt_1924_fdr	54	117	85	78	106	73	115	71	133	47
CTGGCATAGTCGAATT	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
AATGGGCACCAGTTGT	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
GTATATTTTTCTCCAC	alt_1924_fdr	15	18	24	21	23	28	27	19	15	12
CTTTTTGGACCCTTTC	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCGCGTTGCGCA	alt_1924_fdr	25	39	47	26	31	33	38	29	42	26
CTTCGTTTTAAACATT	alt_1924_fdr	235	237	280	226	239	228	290	175	260	194
ATCGGTAGCCTAGCCT	alt_1924_fdr	20	44	27	26	30	15	36	14	54	17
CAAGCGTGATACCATT	alt_1924_fdr	70	103	62	75	98	68	124	77	89	60
GCAATCCACAAACCGA	alt_1924_fdr	7	2	9	7	6	1	2	4	7	4
TTCTGTTCTAATTTGG	alt_1924_fdr	2	5	7	8	5	7	9	4	2	2
CTGTTTTATCGGTAGA	alt_1924_fdr	112	136	136	105	131	102	109	138	147	104
GCTATGAACTTCCTGC	ref_1924_fdr	58	42	56	54	52	34	49	56	42	42
TGGCCGGACAACTGTG	alt_1924_fdr	13	14	11	9	21	12	7	16	16	15
GCCCGTTTTGGATGTG	alt_1924_fdr	22	26	26	22	17	19	23	21	20	19
CGACTTTAACTCAACT	alt_1924_fdr	40	16	29	27	27	28	30	25	45	28
CCGATTTTGGTGTTGA	alt_1924_fdr	34	48	57	32	42	38	31	35	47	31
ACACGGCGATGGTTTG	alt_1924_fdr	8	12	16	13	12	12	11	21	14	18
TTTGGTCGGGACCTCC	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCCTTCTGTGTGA	alt_1924_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGTACTCCATTTG	alt_1924_fdr	17	26	26	31	15	33	26	24	22	20
CGTGGTTAGGAGAAAG	alt_1924_fdr	24	25	33	16	20	18	22	22	38	23
GTAGCATTTTAGTACG	alt_1924_fdr	22	23	18	18	34	15	35	20	36	20
TCGGTCCCGGTAACTC	alt_1924_fdr	36	51	46	33	30	27	45	36	46	29
GCATCAGGCTCGTCGT	alt_1924_fdr	13	12	10	8	22	25	15	9	10	13
TTTGTATCTAGTCACG	alt_1924_fdr	102	107	106	101	138	124	110	94	99	79
CTTCTGCTCGATCACG	alt_1924_fdr	20	17	18	13	13	12	14	18	23	16
TTCTCCGGCATTTGTA	ref_1522_reverse	16	15	29	17	14	18	11	20	14	14
TATATTTTCCACCCTG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTGACGAGTAACA	ref_1522_reverse	100	89	128	98	67	114	100	102	87	100
ATGTGCGGACCACTGT	ref_1522_reverse	2	3	5	0	9	5	5	2	5	3
TGCGTGTAATATTCAC	ref_1522_reverse	76	80	95	98	63	76	73	75	66	72
TTTCGTCATCTTGGCC	ref_1522_reverse	2	1	4	2	3	0	3	3	4	4
TTTGTGTCTGATCTAT	ref_1522_reverse	3	4	4	6	2	4	5	3	4	1
AATTCGCGTAGAACGG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
AGATAACTGATTGCGA	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCAACCGGCAGCG	ref_1522_reverse	25	20	27	21	17	33	19	30	30	25
ACTGAGCTACAATCCA	ref_1522_reverse	95	80	84	90	82	65	66	74	67	73
TAGATTCCGACACGTG	ref_1522_reverse	103	87	152	110	102	108	76	97	110	116
GTGAGTTCCAGAGACG	ref_1522_reverse	19	10	19	14	9	10	7	10	7	10
GTACGTTTCATCAAGG	ref_1522_reverse	12	12	13	7	6	17	10	13	17	17
ATTTTCTGCCGTTTCT	ref_1522_reverse	12	5	5	5	6	4	7	6	1	3
TATTTTAGAGAGTATT	ref_1522_reverse	17	13	21	14	13	21	14	14	16	9
GGACAAGGAATATTTT	ref_1522_reverse	49	29	66	47	38	62	41	44	38	58
ATTTTCGTGAATTCGG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTGCGCTGTTGC	ref_1522_reverse	23	17	41	25	19	19	20	27	20	22
ATCAGCTTTGCAATAG	ref_1522_reverse	47	44	56	59	67	47	53	55	64	45
CCCCGGCTCACTACTG	ref_1522_reverse	28	19	28	23	18	30	29	22	19	19
TGTATTTAGCTTTTTG	ref_1522_reverse	137	91	178	116	115	123	111	115	128	126
GTGGGCTTACTGTTTC	ref_1522_reverse	125	105	151	132	111	146	121	110	104	115
CAGTTAGTTGCATGGT	ref_1522_reverse	40	43	60	66	61	62	68	42	63	50
CACCTACCAGTACTGC	ref_1522_reverse	9	11	6	7	16	8	13	11	9	4
GTTGCTATCCGCAGTT	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TTTATATTTGAGTGCA	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TGTGATACTGATTCAC	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
GATTCTCCCATTCCTT	ref_1522_reverse	133	94	140	134	131	113	116	111	110	119
TCACCGGCATGTCCAT	ref_1522_reverse	5	6	11	17	17	6	5	5	8	6
GGTACTTGTTTCGAGT	alt_1522_reverse	9	11	11	8	15	12	10	9	3	9
CCTTTGTCTAGGGACG	ref_1522_reverse	33	32	24	28	38	24	35	26	40	30
ATCTCAAACTAGGGTG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TTGNGCCGAAGGATAG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
CCGATTCGACACTCTG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TATCACAAATGTGCTG	ref_1522_reverse	92	81	141	99	76	71	81	75	72	85
GTGGATAGATTTGCCC	alt_1522_reverse	465	372	595	557	372	489	376	461	351	467
CGAATCTTTGACGCTC	ref_1522_reverse	99	64	115	85	63	82	53	79	92	82
GCTCGCGATTTCCGGG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TATTTGCGAGGCTTGT	ref_1522_reverse	27	29	34	27	10	23	30	15	29	14
TTCTACCGGAGATCAA	ref_1522_reverse	22	14	21	15	18	15	13	16	16	19
GTCTTTATCACAACTC	ref_1522_reverse	8	13	7	17	3	9	6	8	6	7
TCCATTAGCTACCGCT	ref_1522_reverse	129	120	194	144	110	131	104	130	130	120
GGGTTTGGACTAAGTG	ref_1522_reverse	31	26	36	29	18	25	9	29	24	20
TCTTAGAATTGTTTGG	ref_1522_reverse	80	65	96	91	66	73	71	89	69	63
TCACGCTGGGTAATGC	ref_1522_reverse	36	34	38	39	28	44	28	30	33	41
TGTCGTCCTTAAAAGA	ref_1522_reverse	64	40	62	61	51	45	37	52	30	54
GTGTGACAATTCGGGA	ref_1522_reverse	12	12	18	9	11	14	10	7	8	11
ATTTATGATGGCTCGG	ref_1522_reverse	43	28	63	49	26	44	25	35	31	46
CACGGGTCCTTAATGT	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
CGACGTGACTGTGGGC	ref_1522_reverse	46	53	56	49	46	48	39	40	51	63
TCGCTATTATCATATT	ref_1522_reverse	13	5	15	13	15	8	9	8	6	16
TGTTACCATGCACAGT	ref_1522_reverse	2	3	7	5	2	4	3	5	3	7
ACGAGTGTCATGAGAA	ref_1522_reverse	45	26	49	35	40	41	47	44	40	35
GAAGTGAAACATACAG	ref_1522_reverse	15	2	22	12	5	18	11	10	19	18
GCTGCGCTTCGAGACG	ref_1522_reverse	8	6	7	11	4	11	10	14	5	2
TCGGCTGACGATCGGC	ref_1522_reverse	29	35	25	22	29	27	29	25	29	18
GTAGCCAAGAACCGTT	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TCCACCAGTATTCTCC	ref_1522_reverse	13	43	17	12	38	8	45	14	36	13
GACTTTTGAAAGCATT	ref_1522_reverse	5	1	4	5	5	7	0	2	9	4
ATCGTACTGGTGGCTT	alt_1522_reverse	32	13	35	26	33	26	26	22	20	26
GGTTCGTAGCTTATTA	ref_1522_reverse	79	60	95	89	59	67	82	55	70	48
CCCCTATCTACATATA	ref_1522_reverse	38	38	53	40	32	34	32	34	44	39
AGCGTTCTTCTCAGAA	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCGAATAATAGAT	ref_1522_reverse	80	64	110	117	47	91	67	90	80	87
ATGGCGATTCGTTGTG	ref_1522_reverse	99	78	111	93	70	103	80	89	102	98
TCATCAATCAACTTGG	ref_1522_reverse	98	61	117	68	54	93	70	87	58	80
CCATTCTTATTTGATA	ref_1522_reverse	21	17	25	24	20	30	25	17	25	13
TTATTCGGCCTGGCAT	ref_1522_reverse	99	94	114	109	82	90	93	102	77	92
ACTGGCTGGCCATTAT	alt_5114_reverse	109	81	124	129	98	104	98	115	93	91
CCCCGATTAGTCGTCT	ref_1522_reverse	32	117	44	51	111	42	103	33	105	47
TTGCGTTTACATACTA	ref_1522_reverse	65	39	75	49	44	63	41	56	43	57
TTGGGCCGAAGGATAG	ref_1522_reverse	197	165	263	217	165	207	141	216	168	207
CTTTGAACTCGTCTAT	ref_1522_reverse	14	6	23	10	15	13	11	14	6	13
GCTCAGCATTCCCCCG	ref_1522_reverse	12	16	20	17	23	9	8	13	24	6
GAATTTTATATTTCAT	ref_1522_reverse	26	22	38	36	26	34	30	29	27	37
TATACTAATGTGCCGT	ref_1522_reverse	71	62	72	85	51	89	69	60	45	76
AGTTACCTACGGTTGG	ref_1522_reverse	34	46	57	67	51	53	59	48	52	50
TGAATTTAGCTTTTTG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TGCATCTATGTTTTAA	ref_1522_reverse	34	17	29	29	20	16	20	25	17	31
TGTCGAAGTTGCGACC	ref_1522_reverse	7	2	7	6	9	12	5	11	5	8
GCGGTCCCATGTCACC	ref_1522_reverse	79	48	109	95	85	94	62	68	71	79
CGGAACGGTTGTGTCG	ref_1522_reverse	160	124	210	183	123	154	134	154	131	165
CTCTTCTAAACATAAA	ref_1522_reverse	25	24	56	39	25	39	28	35	32	32
TCTTCCACGTTAGGGG	ref_1522_reverse	68	42	72	61	50	66	61	59	38	53
CGGAATCGCTCTCCCA	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
CATGAGTCTGACAGTC	ref_1522_reverse	33	31	61	46	42	37	39	46	43	51
TCTTAATGTGCTTCAT	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGAGTCCCTATAG	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
ATATATGTCCCTGTAC	ref_1522_reverse	44	29	36	45	37	31	28	30	21	45
CTCGTGCCGACATTAT	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TACGAGTCCCGCGCCA	ref_1522_reverse	0	0	0	0	0	0	0	0	0	0
TACGTCTTTCTTAGCT	alt_1720_RC	11	11	8	12	17	9	17	10	15	15
CATGAATGTGTTTGCT	alt_1720_RC	77	89	106	99	108	89	116	83	109	92
CACCGCACATTCAAGA	alt_1720_RC	0	0	0	0	0	0	0	0	0	0
TGTATGACGTTTTCAA	alt_1720_RC	61	47	66	56	44	42	50	65	45	44
ATTGCTTTTCATGCAT	alt_1720_RC	20	18	21	19	18	17	15	15	41	17
TTGGCGTTAACTACTT	alt_1720_RC	406	361	515	445	371	371	356	415	406	364
GGTTGTCTGTGGTAAG	alt_1720_RC	8	7	9	10	11	11	8	10	11	15
TTGATTATGCTTTAAT	alt_1720_RC	76	84	91	70	75	81	79	82	69	63
TCCGGACGAACTGTCC	alt_1720_RC	16	38	38	11	33	25	32	16	23	23
CTCGCGGTCAAATCTT	alt_1720_RC	14	26	29	21	27	19	26	20	18	18
GATAGGTTTTTGCCCT	alt_1720_RC	58	54	65	40	56	47	47	47	53	40
GCATGTAGCGTGTCTA	alt_1720_RC	18	30	33	35	32	24	32	30	38	24
TTCTTACTGATCGTTG	alt_1720_RC	45	55	58	61	54	46	40	54	56	54
GCTTTTTGCCTGCGTA	alt_1720_RC	68	58	98	85	64	65	87	68	80	69
TTATTTCGTAGTAGAA	alt_1720_RC	12	21	19	9	16	21	18	20	9	9
AGGGATTGTGACCTGG	alt_1720_RC	0	0	0	0	0	0	0	0	0	0
AAATAAGGCGGACACA	alt_1720_RC	85	51	100	78	44	64	36	57	82	64
TAAAGTGCGCAGGGTT	alt_1720_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTACCCATAGTA	alt_1720_RC	63	50	63	72	73	62	80	58	57	53
TGCGTTCCCAATCTGC	alt_1720_RC	13	18	28	21	13	17	13	9	21	16
CGTCTCTTATGGTGGT	alt_1720_RC	42	51	56	37	49	42	58	34	45	29
TTACTCTCCGACTGTC	alt_1720_RC	39	38	53	39	55	46	35	44	26	35
GCGGATACCAATTTTT	alt_1720_RC	216	186	233	187	170	175	214	178	218	162
CCCTGCTCGGGCCTCC	alt_1720_RC	7	17	8	9	17	6	13	14	20	11
GTCATACTTGAGCACA	alt_1720_RC	53	56	72	67	48	54	60	46	56	58
TCCATCCAGGTTCGAT	alt_1720_RC	24	16	17	19	20	18	17	21	31	15
TCGGCTATCTCGGTGT	alt_1720_RC	0	0	0	0	0	0	0	0	0	0
TGAGCGTTGGGATGTC	alt_1720_RC	0	0	0	0	0	0	0	0	0	0
GTTGGCTCACCAGTGG	alt_1720_RC	49	54	75	57	83	60	55	67	71	56
TTTGTGTGAAAAAAAC	alt_1720_RC	68	72	80	75	74	73	79	68	90	59
GAGCTGAAGCTAACCG	alt_1720_RC	11	13	11	17	12	13	11	12	14	12
GCATTCCCGTTCGTAG	alt_1720_RC	16	16	20	22	23	12	25	15	22	21
TGGTTTCTCATCGCTG	alt_1720_RC	25	32	40	34	30	16	29	36	32	30
CCTATTAGCTCGTTCG	alt_1720_RC	56	69	69	60	59	39	58	55	54	56
ACCGTCGTGCCATATT	alt_1720_RC	0	0	0	0	0	0	0	0	0	0
GCTTGTTTGTCCATAG	alt_1720_RC	0	0	0	0	0	0	0	0	0	0
TAGGTTAGCTGATTTT	alt_1720_RC	15	13	20	9	10	7	8	5	16	7
TAATATTCAGTGCCTC	alt_1720_RC	29	32	27	20	17	34	28	30	38	34
GCGGTCTGGCATTTGC	alt_1720_RC	1	2	1	2	8	1	2	0	3	0
TATTATCCAAAAATAG	alt_1720_RC	15	16	10	14	8	11	16	10	12	13
GTAAGGGCGCACTTTG	alt_1720_RC	10	5	17	10	7	10	13	10	15	14
GTCAACCGGCCACAAA	alt_1720_RC	2	5	7	3	4	2	7	2	7	6
CGCTGAATTCCTGGAG	ref_1218_RC	67	100	65	68	70	62	91	43	97	52
TCGGCGCTGGTAAGCA	ref_1218_RC	45	44	51	29	63	43	37	30	38	28
GAAACCTAGGGATTAT	ref_1218_RC	46	67	52	41	27	48	71	32	59	46
TTAAGCTAACCACGTA	ref_1218_RC	8	26	23	27	20	21	20	12	23	9
GTAAACTGGGGTTTTG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ATCGCCCTTAGTAACC	ref_1218_RC	34	61	37	33	38	48	60	45	48	25
CTGCCCATTACTCTTT	ref_1218_RC	6	19	6	5	13	11	12	7	10	11
ACGTCAGGTTATGCTT	ref_1218_RC	7	9	5	7	12	5	5	8	9	3
GGTGTCGTAGTTATAC	ref_1218_RC	40	63	54	44	59	50	69	38	61	40
CTGCGTGTAGCGGCGA	ref_1218_RC	38	49	31	20	40	26	33	29	49	34
CCTTGCACTACGAAGC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TAGTTCTTTTACTCTA	ref_1218_RC	7	3	2	1	2	6	2	5	7	1
CTCATCTTCACGAGAT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CGGCTTCGGTAGGTCT	ref_1218_RC	117	155	166	101	166	126	135	105	165	98
GGCGTAATTACACGGC	ref_1218_RC	46	67	62	51	81	41	62	40	50	48
CTCACAATGCCCAGAG	ref_1218_RC	20	9	17	17	17	8	14	17	18	10
GAATTATTGTGCACGA	ref_1218_RC	3	15	23	15	14	9	15	8	18	9
TTGTTTCTTTACGGCT	ref_1218_RC	42	48	48	28	36	42	35	29	49	35
TTACGTACATTAAGAG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CGTACAACCCATTGTT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CCCAGACATTTGTTGC	ref_1218_RC	38	63	47	39	59	37	51	38	70	30
CATCTATTAAATGGAG	ref_1218_RC	38	36	66	31	49	44	62	37	71	28
CCCTAGTTATTGTCCG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
GTTCTAGCCTCAATAA	ref_1218_RC	14	36	29	14	27	29	32	16	24	19
TATTCCTCACTGTCGG	ref_1218_RC	44	41	43	24	42	32	49	27	65	30
TCGTTAGCCGTTTTTT	ref_1218_RC	6	22	11	14	4	12	12	6	19	7
GTGCCCGGACTTGTCA	ref_1218_RC	7	11	7	6	11	7	18	11	7	7
CAGGGTACTTCCAAAT	ref_1218_RC	6	5	6	22	12	7	2	5	17	6
TAATGTCAGATCTTGC	ref_1218_RC	42	30	59	41	47	43	47	54	58	55
AGCGTCTTTTGTGACA	ref_1218_RC	10	22	15	17	26	12	28	13	20	15
TTTCCCTTGTTGTTTC	ref_1218_RC	12	20	16	12	12	11	17	12	17	15
AGTGGTCCGACTGTGA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTCTTATCACCG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ACGGCTGTGTTGATTC	ref_1218_RC	4	7	6	4	3	2	0	8	6	10
AGTGTCGGGTTTCGGA	ref_1218_RC	3	7	11	8	9	10	16	8	7	9
AGCCGAGCTTACAGAA	ref_1218_RC	8	12	10	3	14	8	8	4	8	8
TTCGCATTCTCCCATG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TAAGTCATACCAGTGT	ref_1218_RC	44	47	49	42	51	33	53	36	65	28
TCGGACGCGAGCGGGT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CCCGTGTTGGTTGAAG	ref_1218_RC	59	151	99	90	182	68	150	76	142	62
TATCACTGGTGTCCGT	ref_1218_RC	9	11	10	2	12	7	3	6	15	3
GAGTGTAGGCTAAGAT	ref_1218_RC	11	12	12	11	15	12	19	6	12	7
ATCAGTATGAATAAGC	ref_1218_RC	10	11	9	4	10	10	8	7	8	15
TGGCATTTTGGATGAA	ref_1218_RC	12	14	14	11	16	12	14	5	8	12
GTTAAGTCTACCTGGG	ref_1218_RC	27	31	28	27	26	21	37	23	43	16
TTATCTGATAGCGTGA	ref_1218_RC	3	1	2	6	1	1	2	1	1	1
GCGGCCAGGTCGGTAA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TGCCGCTCACGTCCCA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
GGATATGTGCTGCTGA	ref_1218_RC	11	16	11	13	20	12	14	11	18	16
TTCTGCTCCGGGGCGT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CTCTCTGACGCAGCTA	ref_1218_RC	21	23	34	16	17	16	23	20	19	19
CGCTTACTTGCCGTCG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TGTGGATGGAATAGCG	ref_1218_RC	18	20	10	20	23	15	10	13	16	12
ACGTAGGTTCGTATCG	ref_1218_RC	43	55	56	45	49	42	76	46	74	56
TCATCGCGGTGCTACT	ref_1218_RC	126	145	141	128	139	107	165	93	182	88
TGTTCGCTCACGGCGC	ref_1218_RC	5	14	16	6	12	12	9	6	16	14
CCCTATTTCAGTTGGG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TTACTTTGTCAGGCCC	ref_1218_RC	1	4	3	4	7	3	3	0	8	2
CAATTTAAATATTATT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ACTGCGTTTTTCATTT	ref_1218_RC	34	35	40	38	52	36	37	26	38	32
GACGATCGGTTTATTT	ref_1218_RC	3	10	10	5	20	6	13	8	6	6
AAACATGATGCTACGA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CACACTTATCTCCTAT	ref_1218_RC	72	72	76	51	79	54	67	60	59	62
GTAGGTTGTCTCTTCA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CATTGTCACATTATTG	ref_1218_RC	3	7	3	3	3	5	7	6	5	7
GTTTTTTTACTGCTCA	ref_1218_RC	36	38	57	30	50	34	55	23	61	30
CTGCAACCAAGAGCCC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CAGTTCCTTTCCGTTC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ATATAGCACTCCATTT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TACATCCCTCTCGTGT	ref_1218_RC	4	35	5	11	32	5	30	2	43	3
ACCTCCGACGATTATC	ref_1218_RC	26	27	41	24	41	29	34	25	47	22
CTAACACGTACGTCGA	ref_1218_RC	56	80	63	48	78	43	78	39	96	56
GCGTTTTGTTTCACTA	ref_1218_RC	0	4	2	3	6	1	1	4	8	0
TCCGGCGCGTCATGAA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCCTTTGTTTTC	ref_1218_RC	1	1	6	2	3	2	4	3	6	4
TATAGTCTTCGCCGCG	ref_1218_RC	15	22	21	16	33	11	23	24	32	22
TCTTGCGGGACGAGCA	ref_1218_RC	12	22	15	9	17	18	15	9	25	7
CTCATACTTCGCCCTT	ref_1218_RC	16	15	17	9	17	16	21	13	17	13
GCCATGGCGTGTGTTC	ref_1218_RC	7	25	14	15	10	25	19	11	21	2
TCTGTTAGATGAATAA	ref_1218_RC	35	51	29	36	47	38	51	20	48	35
TTAATACACAAATTCG	ref_1218_RC	12	15	19	6	14	9	8	9	14	7
TGGCCCGCTGGTGCTA	ref_1218_RC	115	123	141	136	138	119	147	111	137	102
GTCATAAAATGGGATT	ref_1218_RC	19	43	28	28	29	21	48	23	34	25
CAACGTGGTTCGAGAC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TTCGCACTCGGTTGAA	ref_1218_RC	18	31	26	17	27	24	27	13	27	18
CTATTTGGGATGTGTT	ref_1218_RC	5	5	4	7	14	5	10	6	12	5
TATGCCTTTACACCCT	ref_1218_RC	1	0	1	1	1	1	1	0	0	0
ATAAGCATCTGAGGTC	ref_1218_RC	7	7	14	4	5	7	8	7	9	10
TTTTCTCTCCATCCCC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CGATAGGATAAACGAC	ref_1218_RC	83	94	100	98	90	90	95	81	117	77
GACCTACTTTTATGGA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ATACCCGCCCTGGTCG	ref_1218_RC	12	23	26	13	36	21	22	21	28	19
ATTAGCACGTGTCCGG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CCCGTGCCTGCACAAC	ref_1218_RC	33	45	36	36	48	21	53	24	41	28
TCACGCTCCGTCTAAA	ref_1218_RC	16	21	13	10	19	14	22	9	26	15
TAGAGGTCTGTGTGCT	ref_1218_RC	49	62	29	49	70	29	66	41	54	34
CCTTATTTTGTTTATA	ref_1218_RC	1	3	0	1	4	5	3	1	1	2
ATAAAAATGTCGGTTA	ref_1218_RC	42	54	54	42	62	46	74	43	63	42
GGACTCCCTTGATCCC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TCTGCCGCGACCTGGA	alt_1218_RC	31	65	60	44	92	29	81	36	97	43
CAGACGAGCGTTGTCC	ref_1218_RC	20	24	26	12	23	17	29	12	34	18
CTCCTTTCTCTAAATT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
GCTCCTTTAGTATGCC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
GATGTGTTTATCGTGT	ref_1218_RC	15	17	15	12	22	14	12	7	25	12
GTCCGCAGCACTGGGT	ref_1218_RC	23	33	23	24	41	28	37	33	36	27
ACAGTAATAATAACAC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ATACGTTGCAAACTGG	ref_1218_RC	0	1	1	0	2	0	1	1	0	0
CCCAGCGTACGTCCGC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ATATTTCCGGACTAAA	ref_1218_RC	50	66	57	38	56	59	63	35	79	36
TGATCATCGCAATTGT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CTGATCATATAACATG	ref_1218_RC	38	47	49	40	52	42	52	62	69	42
GTGCGGGCGGTCGTCG	alt_1218_RC	26	26	24	19	14	20	29	22	22	20
TTTGTTCGCCGGTCGG	ref_1218_RC	46	55	61	60	54	32	60	41	75	40
CAACGCTGTCGCGCTT	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TTATTTTTCAATGGGG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
CTGGGTAGATTGCGTT	ref_1218_RC	6	15	12	9	14	12	7	16	13	8
AGGGGACTAACTGCCT	ref_1218_RC	19	8	18	7	11	17	17	16	7	12
GATCTTCAGTTCTGGA	ref_1218_RC	23	16	15	9	13	9	16	11	13	16
GTCTCACTCTTCGCAG	ref_1218_RC	7	3	11	6	7	6	6	2	3	3
TGTATCAAGCTACGTA	ref_1218_RC	58	88	58	58	59	60	77	35	81	56
TTCCAAATAGTGACAC	ref_1218_RC	55	56	47	44	42	29	58	43	73	43
TGTGATGGGACTAGGT	ref_1218_RC	118	184	136	116	209	119	212	128	199	111
ATTCTCGTGGGTCGTC	ref_1218_RC	23	23	23	13	30	25	22	11	23	27
CTAGCCGTCATCTGGG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TTTGTCTACGGTCGTA	ref_1218_RC	43	49	37	35	57	46	50	27	62	30
CAACCGTGGTCTTTAA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
ATGCCCAAGCTTGTCC	ref_1218_RC	0	1	1	0	1	1	1	0	1	0
GGTATTGGTTTCGTCC	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TTAGGAGCTTTGGAGC	ref_1218_RC	9	10	11	8	16	5	22	12	12	11
CCAGGTGCATTTGAAG	ref_1218_RC	4	26	5	6	32	7	31	4	28	2
GTGGCTATTGGGTGAA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
GTAGTTTTGCTGTTCG	ref_1218_RC	35	30	33	25	46	28	50	22	46	27
TTCTCCGACTTGCCTG	alt_1218_RC	16	23	20	13	27	20	28	14	26	24
AGCACCCTCTATGTAC	ref_1218_RC	6	6	9	1	6	7	7	3	0	2
TGGATCTCCCCGCTTC	ref_1218_RC	0	24	2	8	19	3	26	2	23	4
TTCCGGCTGTACCCTC	ref_1218_RC	3	10	2	5	10	5	6	7	7	14
GGCGCATCACGGTGAA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
GGCTTTTTAGGTTCCC	ref_1218_RC	19	20	32	14	34	20	28	22	29	23
CGGGTGTGTCCAAGGG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TTCAATCATACTCAAT	ref_1218_RC	23	36	40	23	41	26	30	20	27	24
TTCTTCTGCTTCTTGG	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TAGAGCGTGTTTCTAA	ref_1218_RC	9	12	16	7	23	9	18	13	15	5
TGAACCGGGTTGTAGA	ref_1218_RC	11	21	16	24	31	18	26	23	33	24
ACTTATTTATTCCTAC	ref_1218_RC	40	81	72	54	77	65	80	48	97	41
AGAAAATATGCGCACA	ref_1218_RC	7	13	4	2	2	5	8	7	8	7
ACATCTCTTGCCATTA	ref_1218_RC	7	12	3	7	9	10	10	5	8	7
AGAACGTCCCCTGACA	ref_1218_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTCTTTTCAAGA	ref_1218_RC	13	15	13	10	12	15	15	4	13	14
GATTTTTTTTTAATGC	ref_1218_RC	2	5	4	1	1	1	6	2	4	3
GATTCGTCCATAGTTA	ref_1218_RC	63	84	74	68	106	72	129	73	99	64
TTATGCAATGTGTATC	ref_1218_RC	42	33	47	35	44	30	36	34	27	37
CTGCTAGTGAATGCTT	ref_1218_RC	4	12	4	9	8	11	10	1	15	13
GTGCACACATGTCCGT	ref_1218_RC	12	15	14	11	16	13	14	9	13	10
GGCCCTCGCTGGCACT	ref_4642_fdr	26	33	37	27	34	26	32	24	48	22
GTACCCACACGGTTTC	ref_4642_fdr	32	26	27	19	17	37	37	16	37	24
CACGTTTGCTCGAGAC	ref_4642_fdr	72	97	85	74	107	79	105	84	119	59
AGTCGGTTCCACTGTC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
ATATAGATACTACGTA	ref_4642_fdr	19	26	18	15	28	22	33	10	32	14
AATCCCTGGCAACGCC	ref_4642_fdr	21	35	15	28	28	26	35	22	31	18
TTCGATAATTGAATAC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
CATTTATCAGCACAGA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
ATACGGCGTGGGTTCA	ref_4642_fdr	19	52	35	27	46	33	52	18	40	26
GTTTGATTGAGTATGA	ref_4642_fdr	22	29	19	17	34	16	25	15	28	16
CACTTCCTCCCGCTGG	ref_4642_fdr	13	7	11	9	14	8	9	5	13	4
GCAATTTTCGCAAAGG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGAGGGATGGATG	ref_4642_fdr	101	139	118	88	113	83	161	91	162	75
TTAGTGAATTACACTT	ref_4642_fdr	1	6	4	4	7	5	16	3	3	2
CCCACCAATAGAATGC	ref_4642_fdr	6	33	18	14	40	9	42	16	32	10
ATACTATTGATCGTTC	ref_4642_fdr	32	45	46	26	40	32	40	28	39	29
CTGGTTTCTCGACCTG	ref_4642_fdr	1	5	0	0	3	1	4	2	6	2
CTGTTACAGGTGTTGC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GCGGTATTATCCACAT	ref_4642_fdr	7	17	15	4	12	10	22	11	7	6
CTGTTCGTCCGTCGTG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
AAAGAACTAAGCTTGG	ref_4642_fdr	132	179	154	150	180	133	202	99	206	108
TGAAGACATTATGTTT	ref_4642_fdr	77	111	93	75	100	77	91	54	112	53
CGGGTAGTTCACTGCC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GCTACTTAGGTATTCG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
ATGTACCGTTGGAACT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTTCTTGGCAGT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTTAACAACCAGC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TACGTCACACTGTTTT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTCTCCGGATTC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCAAAGCTCCGCAGCC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTCCCCAGTCTCT	ref_4642_fdr	0	2	3	0	1	0	7	1	1	0
TTTCAACCCCAATTGT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
AGATCGTATTGTGAAG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TACAGTAATAATCGGC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TTAAATCAATAATCAA	ref_4642_fdr	27	47	36	27	30	27	38	36	34	32
GATTCGGGCTAAAGGT	ref_4642_fdr	3	13	5	1	7	5	7	3	1	6
GGAATTTCGACAAATA	ref_4642_fdr	10	15	15	19	17	8	12	15	17	6
ATGGTTCTTTGTTTGA	ref_4642_fdr	15	23	27	29	25	22	22	14	34	15
TTCCAAGTGTTCGATT	ref_4642_fdr	28	49	48	31	46	20	44	22	52	22
TATGGTCTGCACTAGG	ref_4642_fdr	24	37	25	19	31	23	28	21	37	25
GTCCCGGCAACAGTTG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTTTATCGTTCCG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
AAATGCCAATCGTCGT	ref_4642_fdr	12	15	9	10	14	13	18	5	18	10
TTGATACAGATCTAGG	ref_4642_fdr	15	28	18	21	32	20	30	8	35	15
TGCATACAATAGATAT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGGTAGGTAGCGT	ref_4642_fdr	35	49	72	40	61	48	57	52	62	35
GCTCATGCTGACCCCA	ref_4642_fdr	11	14	16	6	21	11	9	9	17	8
TGGGCTGTTAGTTCTG	ref_4642_fdr	32	50	44	39	55	30	54	25	57	33
CTTTAAAGATAACCGG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCCTCAAGTGTTC	ref_4642_fdr	32	77	44	33	71	34	76	35	85	34
CAACTATCTTTTAAGC	ref_4642_fdr	40	40	34	35	55	37	52	30	53	40
AGCCCCTTTGTAAAGC	ref_4642_fdr	38	37	36	21	43	21	45	31	44	32
GAGGATTCGTATCTCT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
ATGAGCCACTTATTGC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGGCGCGACATTC	ref_4642_fdr	15	35	39	26	34	33	47	17	24	23
CAAGGTTCCGTGTCAC	ref_4642_fdr	6	13	18	7	10	7	9	12	17	4
CCGCTATTGGAACTAA	ref_4642_fdr	2	4	0	2	1	5	3	0	3	2
GGTGCGCAATACACGG	ref_4642_fdr	9	25	17	18	34	13	29	11	33	14
CTCGATGCGGATGAGT	ref_4642_fdr	79	53	93	73	84	61	75	57	94	60
AGACAGTTTAACCGAG	ref_4642_fdr	36	39	37	23	48	46	39	29	40	20
TAAAGGCGGTCGACGC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GATAGAAGATCTATCT	ref_4642_fdr	37	23	29	22	34	10	33	22	33	24
GTGTGTTGCTCTGTTG	ref_4642_fdr	68	103	70	68	100	53	93	70	92	72
ATTAGTTATGCCCTGT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
CATTATTCGAGTATAT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GCAATACATTACGTTT	ref_4642_fdr	8	16	15	13	25	11	16	15	9	7
CAAAGATTTTTGCCAA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGCACTTGAGATA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGAAAGCTGCTCT	ref_4642_fdr	9	19	25	10	20	10	18	3	26	8
AACCACCGTACCTGGT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTGTCTGTTCGGT	ref_4642_fdr	22	26	22	21	33	25	36	22	33	19
TTCTGCACTCTCAATT	ref_4642_fdr	20	49	24	19	42	22	42	22	42	27
CTCTCTGACTGTTTTA	ref_4642_fdr	8	10	6	8	20	10	10	5	11	9
CAGTGAGAAAGGTTTG	ref_4642_fdr	14	36	33	12	31	10	43	10	24	14
AGTGTCCTGGATTGCT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCCTACTGTCGATGGA	ref_4642_fdr	3	10	1	2	5	3	4	1	4	3
CTGTTTGGCATACTCA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GATTGACCATCGTCAT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTAGTCTCTTTTA	ref_4642_fdr	35	49	36	45	55	34	50	43	58	27
CAGACGTCTCCCAGTT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCGCCTGAGTTGG	ref_4642_fdr	6	6	7	4	10	5	5	3	9	7
CCGTGGAAATGGTCTG	ref_4642_fdr	18	14	16	18	26	12	24	7	39	14
TCGTCATAAGTTTTAC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
CATTGGGCTCACGGAA	ref_4642_fdr	24	30	19	22	38	25	31	21	35	13
TAAGTAGTTTTGGGAA	ref_4642_fdr	16	17	15	24	23	25	21	16	24	29
TTAGCATACATTTAAG	ref_4642_fdr	12	32	10	10	22	10	30	14	16	13
GCCCCTTGCTGATTTG	ref_4642_fdr	1	3	2	3	2	0	2	5	1	2
GCCATCACCTATCCCA	ref_4642_fdr	14	30	37	27	29	24	38	19	38	29
TGTCGGCACATGCCCA	ref_4642_fdr	6	7	3	4	5	3	8	3	4	5
CGAGAACAGCGCTTAC	ref_4642_fdr	4	6	8	7	12	6	6	6	8	4
ATAGATGGATGAGTGT	ref_4642_fdr	0	2	0	0	3	0	2	0	0	0
TTCCGTGCATCACCCG	ref_4642_fdr	3	2	5	3	4	5	4	2	7	2
CGTGTGGGCTAGCGTA	ref_4642_fdr	26	39	28	20	25	15	25	13	29	19
GCGAGGTACTTCGTCC	ref_4642_fdr	3	11	11	10	4	11	5	10	9	1
TTTTATTCTAGAACAG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGTCGTTTTCCCC	ref_4642_fdr	15	28	33	20	20	13	38	11	39	22
GGACGAGGGTCTACTA	ref_4642_fdr	5	16	9	10	16	9	14	10	14	5
GCAAAACTGCTAACAT	ref_4642_fdr	6	5	0	6	5	2	9	8	12	8
GTGTCACTCGGTCGAT	ref_4642_fdr	5	18	7	21	13	14	9	8	22	9
TCCGTATAAACCGTTT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAAAGGGCCTGTG	ref_4642_fdr	6	20	22	9	15	10	12	6	23	5
GCTCTGCATTACCTGA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCTCGGCCGGAAC	ref_4642_fdr	7	10	7	3	9	10	6	5	4	3
CGATCTGCTGCTCCCG	ref_4642_fdr	44	69	61	58	73	66	67	49	58	56
ATTTTGTACCCCGTTA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGCCAAAATCGAG	ref_4642_fdr	3	6	7	6	6	4	1	4	1	7
CCTTAGACGCATGTGC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGGCTGTCTAAGG	ref_4642_fdr	8	8	2	4	11	6	8	0	9	5
GCCTCACTCGCCGGCT	ref_4642_fdr	14	18	33	14	30	11	19	21	25	13
GAATACACTCGATTAT	ref_4642_fdr	17	45	19	27	32	13	46	16	52	16
TTTTCGTCTTGGTTGC	ref_4642_fdr	5	3	7	5	3	4	5	2	3	2
TCAATCCTGCCACTGT	ref_4642_fdr	10	9	5	10	11	7	11	6	19	5
ATACCCCCAGTTACTC	ref_4642_fdr	1	0	1	1	0	0	0	1	0	0
TATGGTACTGTTAGTT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TTATGGATGTTACAAT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
CACAATCCTGCGTTTA	ref_4642_fdr	12	23	12	13	18	12	18	8	26	8
TTGTTTTCACATGTAA	ref_4642_fdr	7	12	8	4	4	4	7	3	4	8
TCCCTCGGTGCACATT	ref_4642_fdr	51	71	62	53	73	52	86	41	79	44
CCCTTGGTTGAACCGT	ref_4642_fdr	8	22	18	12	11	7	12	10	14	7
ACAAAGCCTCCTTTCG	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCAGATCTGCGAACTT	ref_4642_fdr	24	27	22	24	34	22	25	16	44	15
TAGTGACAGCACGAGC	ref_4642_fdr	0	0	1	0	4	0	0	0	1	2
AGCAATAGGGTTTAGA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGACTGATATGTA	ref_4642_fdr	5	11	7	9	16	8	8	6	24	6
GACCACAACATTACTT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
CACTGGCCTGTAATCA	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGCGGTGGGGCTG	ref_4642_fdr	20	49	26	28	38	30	34	25	37	20
GTAGAACTGCGTTGTT	ref_4642_fdr	25	34	24	19	26	20	27	11	40	15
TCCCGCTACCATACTG	ref_4642_fdr	6	5	9	4	9	3	15	4	10	3
CAGCTCTAGAACAGTT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATGCCTGACCGT	ref_4642_fdr	16	38	22	14	41	12	46	16	52	9
CCTTGTTATTAATGGA	ref_4642_fdr	16	43	24	20	39	14	43	20	41	18
ATCCATCTGGCTGGGG	ref_4642_fdr	44	81	45	33	86	30	102	33	103	27
CCGCTTAACTAGCAGT	ref_4642_fdr	0	2	2	4	4	2	7	2	4	2
GCTTGAATTTTTTGCA	ref_4642_fdr	18	18	21	23	23	16	26	15	27	18
CAGTCTCCCGTCTGGC	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GAGTAGTATGTGCCAA	ref_4642_fdr	7	10	4	6	10	11	6	4	4	7
CAATTTTGAGATCTGT	ref_4642_fdr	24	29	34	27	32	27	40	21	37	23
AGCAGGGATCACTCTC	ref_4642_fdr	41	72	54	45	57	46	76	44	76	38
TTTATGTCCCAATTAT	ref_4642_fdr	9	16	18	13	17	16	31	14	19	20
GATATATTCGTTTACC	ref_4642_fdr	13	8	14	4	19	5	11	8	18	5
TACGATCGCGTCCTCT	ref_4642_fdr	15	35	16	23	34	22	20	16	41	13
TCATTCTAGGCCCAGG	ref_4642_fdr	4	12	3	4	6	9	11	4	6	1
TTGTTTACACTATCCT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTACTGAGGCAGG	ref_4642_fdr	0	2	1	2	1	0	2	0	1	0
AGATACCAGCCTACCT	ref_4642_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGGTCTTAGACGT	ref_4642_fdr	41	80	50	48	67	33	73	37	70	37
CATCGGGAATGGATCC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GTGAGTAGCACAGGCC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TGAGGTAGGGATGCTC	alt_5745_new	22	19	49	29	16	25	11	32	18	34
GTCTGTTGAACGTTGG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TCCGCGTTACTATCCG	alt_5745_new	19	7	25	16	8	9	13	25	7	11
GGGTGTGATGAGGGTC	alt_5745_new	29	17	39	35	10	35	11	29	26	31
TGGATACAGGTTCGAT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GTTAGGCGGGGGCGGC	alt_5745_new	124	46	159	114	32	115	63	115	51	105
ATCGGACCTCTTATTT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TATCGGATGGGTAGTG	alt_5745_new	210	97	250	212	84	171	99	194	125	164
GCCTGACCGGTTACCA	alt_5745_new	27	23	39	36	30	33	18	35	31	25
GTATGTAGCGACACGT	alt_5745_new	42	10	27	26	11	30	11	20	15	32
CGCTCCGTGACTAGAC	alt_5745_new	340	159	400	364	166	354	166	309	154	330
ATGGCTCTTTTTGCTC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ACAGCCGTATAGGCAC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CTCAAAGCTCCCGCTG	alt_5745_new	72	16	82	88	29	84	42	75	33	52
ATCCGGCTAGGTTAGG	ref_5745_new	126	45	194	147	90	137	69	147	73	130
GACAAGTTTATGTTAG	alt_5745_new	33	18	26	38	17	18	16	25	17	23
GTTCCAATTTGCTTCT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CATAACATGCCCTCAC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TTGAAGTTCTTATCTC	ref_5745_new	272	93	267	253	94	256	89	283	91	224
CGCCGGTCACTGCTCA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
AGCCATGTCTCGGCAG	alt_5745_new	56	31	98	62	45	53	42	67	50	72
TCGCCCAGAACTCGGG	alt_5745_new	16	8	24	19	9	15	7	13	4	14
ATTACTCTCCCGTTAA	alt_5745_new	5	1	3	4	4	5	8	4	2	6
CATAACCTCCCATCTT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TCACTGCCTTTTCCAG	alt_5745_new	36	20	48	59	26	41	28	41	26	36
ATCTAAAGCCTTTTGC	alt_5745_new	22	3	22	24	15	30	24	17	17	14
ATATGCATAGTCGAGT	ref_5745_new	41	18	34	34	6	33	27	31	18	38
TCCCCGTGGAGGTGGT	alt_5745_new	15	17	11	10	14	14	8	6	19	10
GCATCTTCATCCTGTA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CCTATAACGGCGGTAG	alt_5745_new	105	47	107	70	50	94	61	94	68	83
ATTTTCGTGAAGCCAT	ref_5745_new	20	5	21	28	2	18	8	8	7	15
TTCCAGTGTCATTACC	alt_5745_new	1	0	5	3	1	2	0	5	2	8
ATCTCATGTTTTCGCC	alt_5745_new	100	48	131	115	39	85	44	91	30	85
TAGGATTCTGGCGGCC	alt_5745_new	92	56	111	90	43	85	59	65	40	64
TCAGCATCCCTGGTGG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GTGACTACGACCCCGT	alt_5745_new	44	47	49	51	36	43	54	35	50	34
GTTTCTGCATGAGTTG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TCCGTCAATTCGTGAG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ATTGTCGTGGATTTTC	alt_5745_new	67	29	83	75	35	70	28	61	26	30
TCCGATTCGCAGGCGA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CTTGATTCTGGTGATT	alt_5745_new	45	34	56	54	20	37	20	33	31	28
TCAAATAGCACTGTTT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TATTGTTGTGTAGCAG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TACCTTTGCGTCGCAG	alt_5745_new	30	13	33	30	22	35	9	26	24	19
CAAATGTTGCCACAGG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CCCTAGGTCTGTCTCA	alt_5745_new	27	15	39	24	19	27	10	24	13	26
TATCCCCAGTCCTCCA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GGGGGTAGCACACTTT	alt_5745_new	18	8	27	22	18	15	10	23	16	23
TTTGTTGTCCATTACT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ATTGAGTTTGGCGGCT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CAGAAGATTGCTTGGT	ref_5745_new	86	47	129	119	57	85	67	105	53	63
GTCTAGACATCGGATG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CTAGACGATGTCACAT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CAGATGCATAGCCTGT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GATTCAATGTATTCGG	alt_5745_new	91	38	124	86	50	84	46	90	55	97
AGCGATCTATGGCATA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ATTATTTTCTTTTCCT	alt_5745_new	98	39	114	127	30	95	35	95	45	84
TTAATATAAGCACTCT	alt_5745_new	49	26	47	37	29	35	23	50	33	28
CCCTATCGCGACCGGG	alt_5745_new	18	6	24	19	15	22	11	23	8	19
CGATTACTTGTTCTTC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ATGGGTGAGTACCTTT	alt_5745_new	8	2	5	9	1	6	3	5	3	7
CACGAAAACTTTATTG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GAAGTAGTATTGCGCC	alt_5745_new	4	0	1	1	1	0	0	0	1	1
GTGGTTCCGGATTAGT	ref_5745_new	275	106	389	303	133	266	139	288	138	252
ACACATGTCCCTGACC	alt_5745_new	94	42	116	118	42	105	51	104	54	94
TCAACTTCCCGCTGTT	ref_5745_new	288	133	356	334	117	238	139	308	171	239
CACCCTTCTTCGTTTA	alt_5745_new	26	18	46	24	12	29	11	33	21	37
ACCTTTTGAAGACGCG	alt_5745_new	17	6	21	17	16	16	10	8	8	17
AACGGTGCAGGTTAGA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CGCCTTTATTAACCGG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
AGGCTTTATGGTTTGA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GAATCGTCTGTTTGTT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GCTGTTATTGGAAGGC	alt_5745_new	84	41	101	70	37	67	26	70	38	72
GGCCGCTAATCTCCCG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TAATGCAAGTGTTCTG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GTTTGAGGTTTTCCCT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GGCCGTTTCAACTGGG	alt_5745_new	11	10	4	18	4	13	1	10	5	13
TTGTGGCGGTTGTCTT	alt_5745_new	23	10	51	35	10	31	12	32	26	17
GCGTAAGGATTCGTCG	alt_5745_new	39	22	38	35	11	30	18	24	8	31
CCCTTTTGCCTACTTG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
AACCCACCGACCAGCT	alt_5745_new	64	36	92	73	44	90	35	71	31	50
AATCTGCATGAGACAG	alt_5745_new	15	5	22	23	6	14	5	22	9	26
TGTCCTGTTTTTGTCT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TGCCGTTACACGTTGC	alt_5745_new	137	67	150	106	78	114	76	126	58	104
TAGTTTCAAGTCCAGG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
AGGATCGCAGTCGTCA	alt_5745_new	39	16	62	39	13	49	10	47	14	36
TTTGCGTCGGCCTCCG	ref_5745_new	9	6	21	20	2	10	6	9	4	8
TTTTTTTTCTATCTGT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TCTCCCCAGCAAACTA	ref_5745_new	2	1	0	4	6	0	2	2	0	0
TACGCCGAGGTTCTGG	alt_5745_new	50	27	47	66	13	46	25	36	21	31
TACATGTACGGAACTG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TGTCCCGCTCCTGCGT	ref_5745_new	16	6	14	18	10	6	4	18	3	13
TGCACTAGCTTTCCTA	ref_5745_new	108	47	106	115	65	97	46	95	50	84
AATTTCTGCGCACCTG	alt_5745_new	11	7	15	11	5	14	5	11	3	15
TAAAACCTAATAAATG	alt_5745_new	118	34	97	121	43	85	46	85	47	91
ATTTGTTCACGTTTTG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TGTTCGGGTGTTTTGC	alt_5745_new	40	14	45	31	25	45	17	26	21	30
ATATGAATAGGCATCA	alt_5745_new	169	64	166	140	74	131	43	155	65	109
CCGACTCGAGAAGCAG	alt_5745_new	76	37	86	71	32	65	44	58	42	83
CAGGCCCCAATCGTCA	alt_5745_new	6	10	7	15	6	11	6	5	9	5
TGGTAGTGTTATTACG	alt_5745_new	71	31	84	65	25	71	26	62	31	65
TCCCTCCAATAAAAGA	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CCAGTTATCGTATGCC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TGAGAACGAATTCTAA	alt_5745_new	3	2	7	7	0	7	2	2	5	7
AGCTTTTTAGCTAGTC	ref_5745_new	162	63	163	145	94	117	60	131	67	102
TCATCTGGTTGTCTAG	alt_5745_new	12	4	19	19	5	13	11	9	8	19
CAACGGGATTGCCCTT	alt_5745_new	32	11	45	28	8	16	16	34	11	21
GAAATATCCTGTTTAC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TATTCGGCCACTATCT	alt_5745_new	193	77	216	185	91	159	85	191	99	163
AGCTAGAGGTGAGCTG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GCAACTTTTGTGTTAC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ATTGTTTTGTGGCCCC	ref_5745_new	30	10	29	36	13	19	8	27	14	21
CAATTTTAAGCCTCCC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TTTGGGTCGATTATTA	alt_5745_new	34	13	61	39	14	33	13	38	11	37
GTGATCTTCCTGAGAT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
GCCGCAACAATTCGTG	alt_5745_new	19	8	25	12	11	13	9	15	7	17
ATGTGTCATTACTAAG	alt_5745_new	48	18	64	58	41	51	31	42	30	37
ACTAACAAAGTATCAT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TATAATGCCATTAAAT	alt_5745_new	28	13	29	31	7	35	15	15	20	28
GAAAGATTTTCAGATA	alt_5745_new	60	24	57	70	32	51	25	66	25	45
TCCATATCGTATACGT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
ATAAGCTGAAGCGCTC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ACAGTGATACCGTCCG	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TAGGGAGGTTGTATTT	alt_5745_new	5	0	2	8	3	9	5	6	4	3
GTTCATCGCGAACTGC	ref_5745_new	221	89	309	258	121	245	100	210	117	236
TCAGGCCGACACGCCG	alt_5745_new	40	19	48	41	22	35	25	37	21	37
CCATGTGGTCAGACAC	alt_5745_new	6	4	16	10	9	10	10	5	10	6
TGAACACGCATACCCC	alt_5745_new	73	32	101	74	29	69	49	60	39	72
GTCATGCAGCTTTCGT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TAGTAATCCTAGATTA	alt_5745_new	104	55	134	125	64	106	51	101	60	113
TTGCTAGTTTAGAATC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TATGTCTCTTGACTTC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ACATACGAATTCCTAA	ref_5745_new	44	14	51	38	13	37	17	49	13	21
AATCTGTTGCGAAACT	alt_5745_new	56	21	53	64	25	45	27	50	27	45
GCATCCACATTCGGTT	alt_5745_new	14	13	41	24	4	13	10	16	18	22
CGGGGGGAGGACAACT	alt_5745_new	331	155	401	371	189	310	167	345	208	269
ATAGCGTATTATACGT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
TCCGGATTTTTTACTT	ref_5745_new	473	218	537	495	243	415	236	434	223	418
AAGCGTTTGCTAAGGG	alt_5745_new	131	53	153	152	65	122	50	114	57	117
AACGACCTGTCCGTGG	alt_5745_new	23	13	27	31	16	20	10	32	17	19
ACATAAAATGCAGGAC	alt_5745_new	209	89	293	253	102	175	92	215	98	175
TGTTCGGTCGGTGCCC	alt_5745_new	40	25	54	60	33	32	42	36	39	42
TTTACATTTAAAATCG	ref_5745_new	172	55	192	158	62	141	73	145	66	128
TTAGACCTCTCGGGTA	alt_5745_new	109	52	109	96	49	88	57	95	59	103
GATACAAGGCATGTTC	alt_5745_new	0	0	0	0	0	0	0	0	0	0
ACTGAGTAAGCTCCGT	alt_5745_new	0	0	0	0	0	0	0	0	0	0
CTCTATGTTGGTGCCG	alt_5745_new	6	2	12	11	3	4	4	12	6	3
GGTGTATGACACAATT	alt_5745_new	55	22	60	55	29	59	36	50	16	40
ATGTTCCGGTCCACCC	ref_6072_new	42	55	54	44	61	42	81	40	87	35
TCACTGTTGGTTCAAT	ref_6072_new	45	55	67	51	77	41	85	34	78	43
AAGGACCACTTTGGGG	ref_6072_new	30	38	44	22	29	31	55	24	44	24
CGGATTACTGTTGCGC	ref_6072_new	3	15	12	19	17	8	20	4	16	13
ACTCTTACGTCATCTC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GTCGGCTAGCCATTGC	ref_6072_new	18	42	33	22	54	31	31	27	35	25
GTCTGGATCCGTTTAT	ref_6072_new	11	20	19	24	21	23	21	8	25	13
CAACTGACATACTATC	ref_6072_new	73	91	75	70	87	47	76	50	74	53
AAAGGCTTCCCTGACT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
ACTGTTAATTCGGTGC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
ACTTTGTGGGCACCCG	ref_6072_new	10	17	15	17	17	10	20	11	16	12
TACAAACTAACTTCAT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TTATTGCTTATTTATA	ref_6072_new	28	50	33	44	44	32	48	26	50	24
TTACATGTCTTTTACA	ref_6072_new	53	69	53	58	50	46	71	28	80	50
ACTTCAGCTACTACAC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TTACTTGGAGATACGT	ref_6072_new	12	30	24	15	39	13	32	16	31	11
CCGTTATCAAGGTATT	ref_6072_new	60	95	66	58	119	57	99	61	105	48
CCTCCAGTGCTGTACT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GGAAATGCTGTTGGGT	ref_6072_new	9	13	11	14	12	6	16	5	17	14
TCCGTTCGCCGTTTAT	ref_6072_new	48	65	53	57	76	36	64	26	75	41
CGGCTCGCATTGTCAT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
AGGTACTAAGCCCCCT	ref_6072_new	22	16	16	21	18	18	19	18	21	14
GTTAATCGGGCGCTGC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TATTCGGCCGTGAATG	ref_6072_new	34	66	40	36	62	43	80	35	60	25
CATAGTGTCGTTTGCG	ref_6072_new	7	19	13	2	12	9	17	11	17	13
GCGAACTGAAATGGGT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTTAGTTAAAA	ref_6072_new	3	1	2	1	2	1	1	3	4	5
AATCTATAATTCCCGC	ref_6072_new	12	24	20	19	30	15	21	16	32	20
GCTAGCAGTTCCTACC	ref_6072_new	50	83	69	59	95	62	97	53	98	58
AATTCTAGCTCAAATC	ref_6072_new	19	28	15	15	37	20	33	26	37	20
TCTCAGGCGCTTCACT	ref_6072_new	67	71	75	51	82	52	86	59	94	58
GTCATTCCGTTCAGTC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TTTTGGCCTTTTTCTA	ref_6072_new	16	31	17	17	13	15	20	19	27	13
TTTGTTTCAACGATTG	ref_6072_new	159	158	137	108	188	126	167	112	174	106
GTTCCTGAACAGTTGA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
AGGGGGGTCGCCATTT	ref_6072_new	56	47	46	52	55	45	47	38	54	45
GACGAGGACTAATTGC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GAATGTTTGCCATTCA	ref_6072_new	21	23	19	18	28	19	31	12	33	14
CTTACTGCTACCACTT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GCTAACCTGCTCAATT	ref_6072_new	109	157	141	134	175	90	182	93	155	109
GACTTGTCCCCTGGTT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TAATGTCGCTGTGGTA	ref_6072_new	113	168	149	132	161	114	173	129	165	123
ACATCCCGGACCGGAC	ref_6072_new	7	6	4	5	4	3	7	5	4	5
CCAGACGTTTCGGAAA	ref_6072_new	0	3	0	5	6	0	4	3	5	2
GCAACTCTCGTATCAG	ref_6072_new	106	179	146	132	173	123	182	117	187	121
GACCCGAGCAAAGTAC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
ATCATATGGTGTTTTG	ref_6072_new	31	56	38	33	58	44	70	32	58	25
CTGTTGGAATTCTGTT	ref_6072_new	32	20	16	23	25	13	36	19	43	16
GAATGCTGCTCGGAGT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GGATGATTCTCTGGTT	ref_6072_new	34	42	44	25	43	33	52	35	63	35
CGATGGCCGCATATTA	ref_6072_new	32	36	26	36	50	28	45	30	36	27
TGATGAACGAAATATT	ref_6072_new	22	24	33	23	42	24	23	14	32	22
TTGTAGTTTCTTAGGG	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GCGGCCATCTTGGTTC	ref_6072_new	75	72	88	87	84	79	73	64	103	79
CGCCCTTAGGCGGCTG	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TCGGACTGGTTGATTT	ref_6072_new	1	0	1	3	6	2	2	5	1	0
TCCTTGTCGGTCTATT	ref_6072_new	10	13	4	8	4	9	9	11	13	8
AAATCGGCATACTATA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TACTTGGTCGCTCTAA	ref_6072_new	19	24	32	13	27	20	32	24	31	15
TGGCGAGTCGCTGTTG	ref_6072_new	44	57	42	36	51	49	63	28	62	46
CTTGAAATTGATTATA	ref_6072_new	52	57	56	51	49	49	75	38	66	43
GTTTTTGGGACAATTG	ref_6072_new	0	0	0	0	0	0	0	0	0	0
CCACCTTCGTGCCGAA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
ATAGCAAAATTGAACC	ref_6072_new	2	7	3	2	5	4	5	6	13	6
CTAGTCATAATATCAA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TTCTAGTACTTGGAGC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TAGTTGCAATCAGTAT	ref_6072_new	28	30	20	18	35	20	25	25	26	17
GGCTCATGTATCTAGA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TGTTCCACATCACAAA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
CCAAGGTCACGGTTTA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
ATACTGATATTGGTGG	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GACTTGAATACGCCGC	ref_6072_new	22	35	25	14	38	25	34	26	32	22
ATAGTTCTAAGCAGCC	ref_6072_new	0	0	0	0	0	0	0	0	0	0
CGGGGTAGCTGCCTCG	ref_6072_new	22	29	21	29	23	28	33	16	34	25
AATTGTCATTCTAGAA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GCTCTGCGAATGTTAA	ref_6072_new	75	93	78	63	88	65	113	67	108	52
AGCGCTAGCTACCTCC	ref_6072_new	5	14	8	6	28	7	36	6	18	4
TGGTTCTATTTTTTTC	ref_6072_new	5	8	6	10	5	7	16	3	10	5
TAACAATCAGACTTAC	ref_6072_new	68	82	49	46	74	36	68	52	77	33
GGGCTCCAGATATCAC	ref_6072_new	5	4	3	3	6	3	1	5	4	3
TTAAACGGTCATACCG	ref_6072_new	22	28	22	10	23	16	31	14	27	26
GTCTCGGATTTTTTGT	ref_6072_new	15	34	31	27	31	21	37	21	38	25
ATACTTTTCTCATGTC	ref_6072_new	48	42	45	24	34	41	46	25	47	33
TCTTGCTTTCTACCTC	ref_6072_new	12	22	19	16	18	24	26	18	26	13
AACTGCGTTTAAACCG	ref_6072_new	12	10	15	14	17	7	24	9	19	9
CTATAGTAAGTGCTAT	ref_6072_new	8	21	19	14	14	8	15	8	17	7
TATGCGTTTTTGGCAA	ref_6072_new	4	7	6	3	8	7	12	5	8	8
GCAGGAACACTCATTG	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TTGTGTCTGCCACTAC	ref_6072_new	2	2	1	1	5	1	5	4	4	2
CTATGAAGTTGTTCCT	ref_6072_new	33	43	21	29	39	21	32	23	49	22
CATAATCCGGCGTTAC	ref_6072_new	30	52	49	37	58	45	48	35	43	39
TACCCCGTAAGTCGCC	ref_6072_new	1	4	5	3	4	2	3	0	1	5
TATTTAATTCGGAATC	ref_6072_new	24	28	28	20	32	8	31	18	26	20
TTTTGCTCGTCTATGT	ref_6072_new	29	75	33	40	51	43	77	38	49	41
GTCTGTCGCTGTATGT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
ATTAGTGCGTGTCCGA	ref_6072_new	0	0	0	0	0	0	0	0	0	0
TTCAGCACGATAAAGT	ref_6072_new	11	17	12	14	10	9	13	7	17	3
TTCATCAAATGTTCCT	ref_6072_new	15	24	11	12	12	9	10	8	11	11
GTTTTAATCTTAGGTC	ref_6072_new	11	16	20	14	20	9	25	14	20	10
CTTTCTCCTGTATTAA	ref_6072_new	21	31	36	18	37	23	39	26	41	24
TAGCTAATTATCGTTG	ref_6072_new	9	20	20	20	19	10	12	8	18	12
ACCGCCCGCTTGCAAC	ref_6072_new	95	147	113	87	159	96	182	97	144	84
TTTACTTTCTTGTTTA	ref_6072_new	48	58	56	36	47	46	75	26	61	35
AGTTGTCTCTCCCTTA	ref_6072_new	12	10	10	14	8	12	18	7	10	7
CCGATATCAAGGTATT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
GGTGCGCGCAGCGGAT	ref_6072_new	39	53	61	36	66	58	57	48	54	53
TGCCGTTGCATCCCCT	ref_6072_new	2	8	10	4	13	6	5	6	6	4
TCCAAATAGGATTGTG	ref_6072_new	16	26	21	14	14	5	8	12	27	7
AGCTACATGATTGAAA	ref_6072_new	63	80	62	71	99	58	84	48	72	45
GTTGTTTGCTAGAAGA	ref_6072_new	80	120	99	88	125	93	107	76	117	73
TCCCATACATTTCCTT	ref_6072_new	18	21	22	29	30	18	20	18	31	18
GCGAGAAGCGGCTGTT	ref_6072_new	0	0	0	0	0	0	0	0	0	0
AGGCAAATCTATTGTA	ref_6072_new	3	8	1	1	3	4	4	4	3	3
TGTCATCCTGCCCGTA	ref_6072_new	3	5	4	5	11	5	12	7	23	4
TTGTTACCTTATGCCG	alt_854_RC	17	28	21	14	21	20	17	26	17	11
CAAGTCATAACGGGCT	alt_854_RC	16	17	38	21	19	24	28	24	29	29
CAAGCCGATCCGGCTT	alt_854_RC	23	16	26	11	13	15	25	23	13	22
GCTTAATAACATTCAC	alt_854_RC	61	33	77	68	41	55	36	52	44	49
ACTTGACTGATTGTGG	alt_854_RC	48	51	57	32	35	53	52	48	39	50
TTCGCGTGCCTAGCTG	alt_854_RC	17	8	21	13	15	16	14	14	11	10
CTTTTAGATCTGGTAA	alt_854_RC	76	56	93	86	56	62	59	60	56	57
AACCAAATATCTCTAT	alt_854_RC	27	30	32	23	20	34	21	37	27	33
CGTATGTGTACTGATT	alt_854_RC	9	7	16	17	14	21	18	14	14	8
CGACGTTACAAATACT	alt_854_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGATAATCATTT	alt_854_RC	49	31	66	62	38	53	35	53	31	43
ACACTATTCTATGATT	alt_854_RC	15	16	23	26	11	15	15	18	13	17
CACCTGATTACTGACT	alt_854_RC	8	7	16	10	16	11	5	12	13	11
TTTTTCGCGTCATGGG	alt_854_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTCAGTTTCCGG	alt_854_RC	0	0	0	0	0	0	0	0	0	0
GAGTGGTGAAACCTCA	alt_854_RC	0	0	0	0	0	0	0	0	0	0
GTACTTTATCTCTATT	alt_854_RC	29	15	43	23	8	31	16	26	15	31
GAAACTGGCATTGAGC	alt_854_RC	0	0	0	0	0	0	0	0	0	0
CCCGTATTTCCACTAC	alt_854_RC	8	12	12	18	15	9	17	18	14	7
TCGGTTCGTCTTCTTA	alt_854_RC	13	11	1	10	4	8	7	3	4	9
AGGTTCTAATTGTTGA	alt_854_RC	0	0	0	0	0	0	0	0	0	0
ATATGATCGCACTTGG	alt_854_RC	72	53	73	43	43	50	61	51	68	47
GTAGCCTCCCCCACTT	alt_854_RC	0	0	0	0	0	0	0	0	0	0
TGCGGCTCTGGTTAAC	alt_854_RC	0	0	0	0	0	0	0	0	0	0
GAGTGCCGATTTTACG	alt_854_RC	25	12	12	17	6	16	11	9	8	17
CATACATACAATTTCA	alt_854_RC	10	6	11	9	11	7	2	6	6	7
GGAACTGATTTATGTC	alt_854_RC	0	0	0	0	0	0	0	0	0	0
GCGTCATGAGTTTCTA	alt_854_RC	31	33	42	42	34	31	36	28	32	38
AGTAGTGGCGGTTTTC	alt_854_RC	32	23	38	25	26	31	24	39	26	22
AGCGACAATTCGACTG	alt_854_RC	81	58	96	86	60	66	66	77	52	64
GAACGTGCTAACATTC	alt_854_RC	91	60	108	87	54	82	72	92	67	98
GCGGATTTTTTCGAAC	alt_854_RC	48	45	46	50	31	31	39	47	34	37
GTTTTTGCTCCCCTTA	alt_854_RC	18	19	19	23	23	14	15	13	25	12
CGTTTTGGCGGAACAA	alt_854_RC	20	17	33	17	12	22	18	15	18	22
CGGATGGTGCCCCCCC	alt_854_RC	53	27	83	62	25	45	41	46	34	39
CTCTTTCAGTTTTCAA	alt_854_RC	0	0	0	0	0	0	0	0	0	0
CATTCGTCGTAGAGCG	alt_854_RC	18	12	13	17	9	9	16	11	11	12
CTATTAACGTTTTACA	alt_854_RC	0	0	0	0	0	0	0	0	0	0
GCCACGGGCTAACCGC	alt_854_RC	234	201	309	268	223	244	226	254	245	207
TATTACTCTGATCGCT	alt_854_RC	0	0	0	0	0	0	0	0	0	0
CAATGCGCTGGTATCT	alt_854_RC	34	24	37	39	37	31	23	24	22	37
GGTCTCCACCTGCTGG	alt_854_RC	0	0	0	0	0	0	0	0	0	0
ACGTGCGCAGTGCAAC	alt_854_RC	40	26	58	57	32	44	36	45	29	32
TTGTGTTTAACTCAAT	alt_854_RC	142	105	140	139	105	117	113	95	99	102
TATTCTACCGATTTTT	alt_854_RC	56	59	82	77	56	65	57	51	68	57
CGCAAACATTGAAGTT	alt_854_RC	0	0	0	0	0	0	0	0	0	0
CGCACGAACGTGGTCC	alt_854_RC	77	42	89	73	53	58	54	62	50	46
CAGTTCTGATGATTAG	alt_854_RC	13	50	24	25	34	28	43	16	62	15
CTGCCCTTGTAGACCA	alt_854_RC	97	70	127	110	89	108	76	83	84	65
CTCTTTGAGTCGCTAT	alt_854_RC	43	42	49	54	46	49	52	44	55	39
TTCATGTCCACCTGTG	alt_854_RC	75	51	76	69	42	61	42	67	64	68
ATGTTCTTCGTTCCCG	alt_854_RC	72	53	76	77	51	77	51	61	58	56
TCTCGCCTTCACATAA	alt_854_RC	103	76	113	93	63	86	74	71	88	83
GCACCAAGTGGCACGA	alt_854_RC	95	67	120	121	69	118	56	106	93	90
GGGTTTTCTCACGGTA	alt_854_RC	10	9	15	22	16	15	10	29	13	17
TGCTGTCGTCTTGTCC	alt_854_RC	40	42	55	61	27	42	33	44	37	45
GCATGGCCCGCACGGC	alt_854_RC	26	26	18	24	9	17	20	14	24	25
CTGTCCCGGGTCCTAT	alt_854_RC	25	26	31	20	13	28	16	22	23	16
TTACCCTAGGTTCTTT	alt_854_RC	22	28	33	30	37	18	31	21	31	27
TGCCTCACGGCAAGTA	alt_854_RC	0	0	0	0	0	0	0	0	0	0
CTCTGCATGTAGCCCT	alt_5964_new	2	4	3	1	3	1	5	0	5	4
TCATGCGTAAACACGC	alt_5964_new	67	112	71	67	115	58	103	50	96	58
CACGCCTAGTCTGATG	alt_5964_new	1	12	4	6	4	5	8	4	6	4
CCTCTCAGTATATGTC	alt_5964_new	21	37	23	19	33	17	22	16	32	9
AAATAGGCATCCGTGG	alt_5964_new	31	48	31	25	36	21	40	16	44	23
GCAACGGCACGGAATA	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TTGTGTGTTCCCGAAG	alt_5964_new	108	179	148	119	200	110	217	94	218	101
GTGCCAGCTCGGGAGT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
ATCTGCTATAGAATTC	alt_5964_new	62	116	69	49	81	46	93	47	102	52
GATCGGGGTCGATACC	ref_5964_new	114	159	126	120	158	112	186	108	172	107
TGTTGACGCCCGGATT	alt_5964_new	9	8	10	8	8	7	12	5	12	9
CCTGGGTCCGATCTGA	alt_5964_new	25	46	32	36	58	30	54	29	49	24
ATGCTTTAAGACGGTG	alt_5964_new	13	34	15	12	38	16	31	12	39	12
ACGTGAGAGGACTTAT	alt_5964_new	51	78	72	70	81	53	114	52	103	51
ATCCTTGTCGTTCGAC	alt_5964_new	3	5	4	3	8	1	7	2	7	7
TGTTCGGTACTTTTAT	alt_5964_new	137	265	154	143	268	133	294	137	334	139
TTTTAATTCGTAATTG	alt_5964_new	14	11	15	5	17	8	29	11	28	7
TACCATGGTCAGCGTC	alt_5964_new	61	83	62	52	97	58	94	60	107	51
TACAGACTCGACGCCG	alt_5964_new	22	27	26	15	46	11	35	7	27	13
CCCAACCCTAAATCTC	alt_5964_new	5	24	7	9	20	2	28	15	25	4
ACCTGGACAGGATCTG	alt_5964_new	22	25	22	13	23	21	28	18	33	18
ACCGGGCAATGTCATC	alt_5964_new	0	0	0	0	0	0	0	0	0	0
ACCGTTATATGTCGAT	alt_5964_new	12	44	19	22	53	18	50	18	45	25
GCTTCTATGTCTAGGG	alt_5964_new	5	14	2	5	7	4	5	8	7	7
ATGGCCGCGTCGGTTG	alt_5964_new	35	26	33	24	31	23	34	28	42	35
GTCCCGAGGTGTGAAG	alt_5964_new	2	3	4	2	2	1	5	1	5	0
GCTCGTGCCTTATGCG	alt_5964_new	39	122	42	39	103	46	99	43	90	42
TCTCTAACGCGGAAGA	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TACGGTCATCTAAACA	alt_5964_new	0	0	0	0	0	0	0	0	0	0
CACATAGTCCACTTTG	alt_5964_new	17	27	9	8	14	5	20	8	19	7
TCGTACGCTGTGACAG	alt_5964_new	30	48	27	31	42	20	47	35	62	20
TACGGCGTGATAGTTT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
GCTCGCTAACTCTGGT	alt_5964_new	17	35	30	22	24	16	41	16	39	8
GGCCTTCTCATGGATT	alt_5964_new	30	39	30	23	39	26	46	23	52	38
AGTGTGTAGGGCGCTT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
CTGTATTGGAACCAGG	alt_5964_new	17	27	16	7	33	12	23	15	29	12
TTTCCGGCTCCACGCC	alt_5964_new	19	28	9	16	27	9	45	14	33	18
CAATCGTCCCTCAGGG	alt_5964_new	0	0	0	0	0	0	0	0	0	0
CTTGGTTCGCTGTGCA	alt_5964_new	6	21	8	4	36	4	22	2	29	3
TAAATCTAATAAAGGA	alt_5964_new	109	161	130	83	150	96	170	80	133	89
TTATCTTCCTTGAAAT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
GACTGTCTTGCTCTGG	alt_5964_new	7	9	9	4	10	8	13	10	9	4
TTGGCTCTCTAACTGG	alt_5964_new	13	23	8	14	17	8	15	15	16	12
GTCGAAGGTTATTAAG	alt_5964_new	8	7	4	3	7	4	2	2	7	6
TGAATCCTGTTCCTTG	alt_5964_new	22	41	22	14	43	25	51	20	47	23
TCGATCGTATTGACTT	alt_5964_new	6	35	28	11	41	17	34	22	45	16
TTTCGTAAATTATAGT	alt_5964_new	24	33	39	23	40	25	43	13	56	30
GCGGATAAAGCCGATA	alt_5964_new	25	27	39	25	49	19	49	24	35	29
TCCGTTCCCCTGCCTA	alt_5964_new	0	0	0	0	0	0	0	0	0	0
GTTAAACTTAAGTTCG	alt_5964_new	5	10	5	5	11	3	7	4	14	5
GTCACCAATTGTCTCC	alt_5964_new	58	212	57	56	244	46	223	67	237	45
ATACTTTATGAACCGT	alt_5964_new	4	4	0	2	7	1	2	1	5	0
GTGCGGGATGCGTAAG	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TGGCACTTCAATAACC	alt_5964_new	0	0	0	0	0	0	0	0	0	0
CCTTCAAAATAGGTTT	alt_5964_new	15	10	6	5	21	12	10	12	10	7
TGCTATGAAGTAGAAA	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TGAGTTCAAAAAGCCT	alt_5964_new	59	99	63	58	125	51	116	44	123	48
ATGGTATTAGTCTGTT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TGAGGTGGTCCATGGT	alt_5964_new	10	21	13	15	18	12	15	11	28	18
CTGGTCAGTCAAAGGG	alt_5964_new	0	0	0	0	0	0	0	0	0	0
CGAGGTTAGTCGTAAT	alt_5964_new	1	3	1	0	1	1	2	1	2	0
TCTCTTGTTGGCACAA	alt_5964_new	1	5	2	4	6	4	5	1	3	1
GTGAGGTAATTGTTCT	alt_5964_new	67	70	64	40	66	43	72	63	87	51
AATCGTACCCCAAATA	alt_5964_new	6	4	1	1	6	4	9	0	9	4
AGGTATCTTGCGGTTA	alt_5964_new	6	15	16	5	29	9	23	11	30	11
CCTTTGGCACTCGGAT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TGACCCCGAGGTTCGT	ref_5964_new	7	12	7	8	12	5	12	6	17	7
GACGTCTCTTCCCCTA	alt_5964_new	0	0	0	0	0	0	0	0	0	0
GATTTAGTGAATACCG	alt_5964_new	15	23	23	19	34	21	41	13	27	18
CTAGTTGGATTAAAGA	alt_5964_new	28	37	32	26	39	30	37	18	43	22
CTGGTCCACCTTTTGT	alt_5964_new	2	7	5	4	11	6	9	3	8	5
TGTATGTTGCCCCCCA	alt_5964_new	0	1	0	0	1	0	0	0	0	1
GCTCCCCGCAGCCTAC	alt_5964_new	0	1	0	1	4	0	0	0	1	0
TCCACACATGGTGAGG	alt_5964_new	10	8	4	9	9	5	4	3	8	1
TCACCTGCCTCCCAAC	alt_5964_new	10	62	16	10	45	18	51	15	44	11
ATCTGTGCTGGCTGGC	alt_5964_new	40	61	61	27	55	31	49	27	67	36
ACCTCCGCGTAGAGAT	alt_5964_new	82	148	98	97	160	79	175	84	186	71
TAATTTCTGAAAGATG	alt_5964_new	18	53	29	24	42	27	50	19	48	17
CAGATCTTCACACGAT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TGTTCAGTCTGAAGGA	alt_5964_new	26	39	30	30	43	14	34	28	52	21
CTTTTTCTACTGTTGT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
TCTTTGAAGCACTCAC	alt_5964_new	9	21	10	17	14	8	11	6	9	8
TCGGGACCTCTGAGGG	alt_5964_new	42	100	64	59	78	52	92	72	71	51
GGACCGTATTGTATGG	ref_5964_new	16	17	21	20	40	17	20	9	28	10
GAACGGATTTGTGGTC	alt_5964_new	6	13	13	12	20	10	24	17	20	11
CGCGGTAACTTGCCTC	alt_5964_new	29	50	37	36	49	37	58	39	46	34
TGTTGGTATGTATCCT	alt_5964_new	11	27	13	13	21	17	24	15	35	15
TGTTGTTCAGCGTGCC	alt_5964_new	32	34	29	28	37	19	48	29	35	11
GCTGGACCGGACTATT	alt_5964_new	10	21	7	2	45	8	22	8	11	4
GGCTGCGCATTTTCAT	alt_5964_new	4	2	2	1	4	1	1	1	1	0
TGCATCGATACAAGAT	alt_5964_new	11	11	10	7	8	6	14	11	8	4
CACTTGTCAAGATAAT	alt_5964_new	25	42	30	30	52	39	48	25	59	36
TTTGGGAAGTCTTGAG	alt_5964_new	3	5	6	3	4	5	9	5	7	2
CCTAATATTCAATATT	alt_5964_new	0	0	0	0	0	0	0	0	0	0
CCTTTGTAATAATCTC	alt_5964_new	25	20	9	9	19	20	21	14	27	9
GTTATTATGTCGATAC	alt_5964_new	23	25	10	10	25	11	42	14	32	10
AAGGCAACGTTCGGGA	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CCCTCTGTCTTGGCTA	alt_16_RC	6	13	6	17	17	3	18	4	20	8
CAGCCATAATTATGTT	alt_16_RC	4	9	2	3	17	2	16	5	18	1
TTCAGCGTTGCTTCGC	alt_16_RC	17	23	27	9	19	21	21	9	23	14
TTCAGATATTTATAAT	alt_16_RC	52	94	99	54	89	55	100	53	111	59
GCACGTCAACCAGTAT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CTTTTTAGTGTGTTAA	alt_16_RC	16	19	20	14	15	23	22	13	37	8
CCTCGAGCCCTACTTC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CGCCTGTCGAAAGTAT	alt_16_RC	5	12	11	6	14	7	17	8	12	8
TGCCCTAATAGCCAAT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TATGGCCTAAACCTCT	alt_16_RC	1	2	2	3	8	7	4	0	5	4
GTTATTCTAGAACAGT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GGCATGTGTACGCCAG	alt_16_RC	10	20	16	14	28	12	27	26	29	14
ACTACGGTGTTACGCA	alt_16_RC	3	19	7	10	11	6	10	6	15	5
AGTCCCATTACTTGGG	ref_16_RC	49	65	61	41	55	49	74	43	90	57
GCCCTTTAAGCAGAAA	alt_16_RC	6	10	13	4	11	5	23	5	12	8
GTGAGTCTTCGCGAAG	alt_16_RC	32	41	37	47	59	39	59	27	45	25
CGTTCATAGCCGTGCT	alt_16_RC	31	44	37	45	44	38	49	29	58	22
TTGCTTCTTTAAGGGC	alt_16_RC	3	2	5	3	7	3	5	6	3	9
CCTTGCCCGGGTTCTA	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TGGTCGCGAGTTCGAT	alt_16_RC	24	15	23	13	14	20	31	18	21	18
ATGGACGGGATTTATC	alt_16_RC	59	94	70	57	92	54	90	40	105	52
CTGCTAGTTGTGCCTG	alt_16_RC	32	41	29	24	50	20	55	27	46	21
GGTTCTTAACGGATTC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TTGGCGTCCTTCATTC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
AGTTAAAGCTTTAGAT	alt_16_RC	48	70	40	37	78	40	60	35	83	41
TGTTCCTAGCCCAGAC	alt_16_RC	4	4	5	3	6	7	3	1	2	1
TTAGTGCTTGTACAGG	alt_16_RC	4	3	3	3	4	3	4	2	7	1
CCAGACCGACGCCTAA	alt_16_RC	4	17	11	4	8	13	10	4	16	2
TTATGACATCTCCATT	alt_16_RC	15	14	15	2	12	5	15	5	13	7
GGATACATTAAGGTAG	alt_16_RC	80	124	96	87	118	79	132	80	136	80
TTCCAACTCACTTGTC	alt_16_RC	2	5	3	5	13	2	13	4	10	3
TTACGGCGATTTGTAT	alt_16_RC	134	226	152	164	253	136	297	130	243	110
CTTTCGACATTTTCTG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TCATAGTTGCGCGGTG	alt_16_RC	34	93	60	60	71	37	81	46	85	41
CACTGTCTCTAAGATG	alt_16_RC	19	30	28	19	43	21	38	10	39	16
GGGTATAAGGTAGATT	alt_16_RC	6	4	5	2	4	0	6	3	5	3
CAATATCCGCCAGTAA	alt_16_RC	40	43	53	31	58	37	52	33	65	30
TAGAGCATCGGTGTTA	alt_16_RC	10	16	8	8	12	7	11	6	8	6
ACCCAGAAACTCGTAT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TGCCGCTCCTGGAACA	alt_16_RC	2	5	7	3	11	3	4	5	5	1
GTCACTCGATTACATT	ref_16_RC	62	89	93	59	103	81	99	80	98	69
AGGGGTTTGGTGGAAG	alt_16_RC	2	10	2	1	5	2	1	2	9	5
TACGGACGCTAATATG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
AGTCTAATCTTAGCGC	alt_16_RC	4	7	5	7	8	6	8	6	5	7
GGTTTTGCCAACCCTG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CAATTTTACTTTCTGT	alt_16_RC	76	82	75	84	110	47	108	65	127	65
GCCCCTGTCAAAGTGT	alt_16_RC	36	74	35	30	54	23	48	21	51	32
CGTGTCGATTATCTTA	alt_16_RC	11	25	26	13	15	10	19	10	17	5
AAACGTAATCTCTCAC	alt_16_RC	5	4	4	3	6	3	7	4	9	1
CTTCAGAGGCCTAAGG	alt_16_RC	23	57	44	37	64	39	54	30	45	30
GGCCCTCCGCTTATAT	alt_16_RC	1	5	10	8	11	1	15	7	11	9
CTGGCTTGGCGATCTG	alt_16_RC	15	33	20	12	23	24	28	13	30	23
GTCAGCATGCGAGCAG	alt_16_RC	8	19	13	12	19	14	10	12	11	4
TGGGCGTACTATTAGT	alt_16_RC	19	37	26	24	48	20	48	21	42	20
AAGCACAAGCGTGGTG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TATTTGAGACAACTTT	alt_16_RC	38	43	29	29	60	30	60	24	59	34
TAAGGTTCTTTTCGAG	alt_16_RC	1	6	4	7	4	5	5	4	12	2
GCATGAGCCGTGCACT	alt_16_RC	53	76	60	52	66	50	85	42	67	37
GGGTCTGATAGTCGAG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TAGTCCTATCCTTCAA	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TTCTGCTGATTAGCCG	alt_16_RC	8	7	1	3	3	6	7	9	8	4
TTGCTAGAGACACTCT	alt_16_RC	17	26	9	20	45	10	37	10	37	15
GGGCATTGTATCCAAA	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TGACTGAGGTTTGTTG	alt_16_RC	75	104	90	79	98	62	101	83	118	67
GTTTGGGGCACTTATG	alt_16_RC	9	30	18	14	33	3	39	4	25	11
TCGCTTCCATCAATGG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TGAGTTTATTGGTAGC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GCACACATATTATTAA	alt_16_RC	24	45	31	26	46	20	62	24	58	21
GAATATGGTATGATGT	alt_16_RC	9	15	13	8	22	10	21	12	12	9
AGGATTAGTTACCTCT	alt_16_RC	10	35	20	18	31	16	24	9	40	12
TAACAGTTGACTTGAT	alt_16_RC	18	24	20	16	21	22	20	14	19	16
TGATTATTGCGTTGTG	alt_16_RC	22	27	21	17	39	27	35	16	34	13
CCTCGAGCCCTATTTC	alt_16_RC	49	76	42	44	110	66	82	40	96	30
TTGGTTACTCAGGCAC	alt_16_RC	2	3	6	4	6	6	8	6	6	3
AGTAATCTACATGGTA	alt_16_RC	0	0	0	0	0	0	0	0	0	0
ATTTGGAGGAGCGCTA	alt_16_RC	0	0	0	0	0	0	0	0	0	0
ATGAATGGCATCCGCT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TAGAAATGCCTTTACA	alt_16_RC	5	7	7	4	12	4	13	9	12	4
TAGATAGGGCAACACG	alt_16_RC	14	21	22	20	28	17	26	15	42	11
TGCAAAGCTGAGAGGG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
ATGCTTTAAGTTAGCG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CTTTCAACGTTTCCGT	alt_16_RC	36	82	39	46	79	49	61	37	80	35
CTTGTCGGATTGACTA	alt_16_RC	127	200	152	124	204	104	253	102	252	115
TTAGCGCTATATGCAT	alt_16_RC	5	10	5	5	10	10	13	7	7	5
CGTTTATTTTAGGTAC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TCCTACTGAATACCAT	alt_16_RC	122	197	161	148	227	118	188	96	217	97
CCAATTTAGTTTCTTG	alt_16_RC	6	21	4	13	15	11	18	11	21	10
GGACCGAGTGACGTTT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GGACACACGCCGGATT	alt_16_RC	59	83	62	63	70	43	59	37	64	52
AGAAGCTTCAAACGTC	alt_16_RC	9	19	15	11	15	8	12	7	26	13
CCCGGTGGCAAGTCAC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TAGTACCAATCACAAT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GCCATTCCCTCGGGGG	alt_16_RC	20	18	25	16	33	18	30	16	25	10
GGGTGAATACTAATTA	alt_16_RC	11	15	15	11	16	10	11	8	20	8
CATATCGGAATCCTGA	alt_16_RC	24	49	37	29	45	21	48	33	57	27
GCGTCTTTGACCGCCT	alt_16_RC	15	24	33	21	31	15	24	19	37	16
ATCCTGTAGTAAGAGA	alt_16_RC	6	9	7	3	10	1	7	3	10	3
GACCCAGGGCTTCTTT	alt_16_RC	31	36	32	23	32	21	43	26	42	26
GCCTGCCTCGAAACCG	alt_16_RC	5	11	10	7	14	7	13	6	16	12
CACCTGATTTCAGTCA	alt_16_RC	12	25	36	18	26	12	25	17	35	24
TGTGGCATGTATGCAA	alt_16_RC	36	56	41	27	54	35	56	40	60	21
TGGGTTGATCGTCCGG	alt_16_RC	9	10	3	5	1	2	9	11	6	9
ACTGTCTGTGTTACTA	alt_16_RC	24	39	32	32	51	29	62	33	42	20
TTTTGCTGCCCTCTCA	alt_16_RC	2	9	2	2	1	1	6	1	1	1
ATTGCCGCCCGTCCGC	alt_16_RC	40	63	70	60	76	39	96	51	73	51
AATTCCGGCTGAGCCT	alt_16_RC	74	85	60	50	81	52	86	56	93	51
TATGATTCGTATTGTT	alt_16_RC	26	87	55	34	89	43	63	43	73	29
CGCATAAATCATTCTT	alt_16_RC	164	202	177	155	216	154	196	151	200	137
GGTTGTTACCGAGTGG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GTCTTGCTATGCCACA	alt_16_RC	22	33	34	18	49	24	63	27	44	32
TGGCCCACAGATGGTA	alt_16_RC	6	14	8	12	11	10	8	6	17	7
ATCTCGCCTCTGTAAC	alt_16_RC	3	1	2	2	1	1	5	3	2	2
GCAAGCATATTATTGC	alt_16_RC	14	27	20	9	22	16	34	7	21	18
TACGCGGGTTATCGCA	alt_16_RC	94	108	112	86	140	81	134	83	165	75
TAAGCCTTAGGTACGT	alt_16_RC	3	2	0	0	2	0	1	0	3	0
GATAGAACTGGCATTA	alt_16_RC	9	11	15	8	13	10	20	6	23	5
GGATCGTCCCTAGAAA	alt_16_RC	18	45	37	29	37	27	46	29	53	17
TAGCCCGATAAGCTCG	alt_16_RC	20	23	26	13	31	24	33	19	27	8
AATCCGCTAAGGAAGG	alt_16_RC	10	21	12	6	19	8	14	10	12	11
GCAAAACTTCTTTAAA	alt_16_RC	10	27	11	13	30	11	21	26	16	9
CCATGGCGTTTTGTAT	ref_16_RC	84	129	89	80	103	87	129	84	141	63
CGCATGAAGTAAGGCG	alt_16_RC	97	134	125	106	138	97	135	79	145	86
GGTCTCTCGTGTGCTT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GTCAAACGGGAAACGG	alt_16_RC	10	2	7	4	9	2	5	2	5	2
CTTCTGCATACCTCTG	alt_16_RC	26	47	32	51	62	38	57	26	65	26
GGCTATTTGCACATTA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TAGCCTGCAGCCGCGT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CTTCTCTTTGGCTGGT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
AGTGCGCCACCAGTAG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GACTGCGCGATTTAAG	alt_16_RC	3	4	3	3	6	2	13	2	8	3
GTCTACTCACACTGGG	alt_16_RC	0	2	3	1	12	3	4	6	3	3
TGGTGCGATAATAGAC	alt_16_RC	134	169	143	130	139	120	232	72	202	95
CGCAGTATAGCTAGTA	alt_16_RC	13	14	15	20	22	10	16	14	38	17
TCGGGTCATTTTCCGT	alt_16_RC	17	49	18	19	50	9	52	16	52	13
ACTCGCCACATGGCAC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CTTTGTCAATATTTCT	alt_16_RC	5	9	13	5	14	8	24	8	13	5
TCGTCCTCGAACCACC	alt_16_RC	0	0	0	0	0	0	0	0	0	0
TAGGTCAGCTCTGAAG	alt_16_RC	0	0	0	0	0	0	0	0	0	0
CTCCAAGCGTGGTTCT	alt_16_RC	13	24	17	4	21	13	22	13	15	7
TCCAGCAGCTCACCGT	alt_16_RC	9	17	13	6	19	9	29	11	31	4
CTGGCGTCCAACGCTA	alt_16_RC	2	8	5	4	16	6	17	8	14	8
GGCTCCCGCAAAAGAG	alt_16_RC	90	159	86	90	134	98	148	84	154	92
ATCTGTCTCGCGCCCC	alt_16_RC	17	35	36	30	47	25	46	23	43	28
AGTACGTGTTTGTGAT	alt_16_RC	7	9	5	3	15	2	21	5	10	2
AATCACTGCCATGTCA	alt_16_RC	44	51	49	47	63	32	59	37	82	31
CCGGGACGTCGGTGTG	alt_16_RC	38	77	27	30	106	27	75	30	97	25
CTGTCCCCACGCTTTA	alt_16_RC	58	74	44	62	89	46	87	43	81	28
GCTATAAGTATACTCG	alt_16_RC	27	68	40	19	52	21	62	20	67	27
CCAATATAGTCCATTT	alt_16_RC	11	34	23	20	43	18	34	18	43	17
CCCAGTACAACGAGGC	alt_16_RC	13	13	12	13	12	11	14	16	16	10
TCTTATGTTGGAATCT	ref_16_RC	20	21	16	10	23	16	14	10	19	15
GACAAATGATTGACAG	alt_16_RC	9	11	12	7	20	10	11	4	16	4
ACGCTTTACATCTATC	alt_16_RC	0	1	1	1	0	4	1	0	4	3
CACGCCGGGCCTTCGT	alt_16_RC	5	18	10	17	15	11	20	10	13	7
GGATCCACATATAGTC	alt_16_RC	56	109	56	54	89	61	97	42	120	62
ACCTGTCCGTGTTCGT	alt_16_RC	0	0	0	0	0	0	0	0	0	0
GGTCGGCGTTTATAGG	alt_16_RC	18	37	32	16	26	32	42	21	42	23
TGCAAAACCAATGTTG	alt_16_RC	7	7	4	3	5	4	3	1	6	4
TTGTAAGATTAGCCCT	alt_16_RC	23	23	20	18	34	11	33	12	28	16
GTCGATATTCGACTAG	ref_2283_fdr	16	20	21	11	30	15	15	4	19	12
TTTCTCATGGCCTTAC	ref_2283_fdr	22	27	31	20	40	19	38	21	36	22
AGTCCCATATGCTCAG	ref_2283_fdr	82	111	104	74	145	93	107	95	151	84
TAAACAGGCGAGAGTC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
ATTGACATTTTCGAAT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TAGACCATGCTGTATG	ref_2283_fdr	21	24	20	14	30	15	16	18	17	19
TCATTGTGTAATTAAC	ref_2283_fdr	24	32	32	25	30	24	29	13	30	18
GTAACTCCTTGTTCTT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTATCTTCCGGTC	ref_2283_fdr	15	28	21	18	21	17	23	19	28	11
GTCCCGGGAGGCCGGC	ref_2283_fdr	20	11	18	12	17	11	23	13	15	9
GCTGCCGTGAGTTTCG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGTGAGTCGCTGA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CTGATCTATTATAATG	ref_2283_fdr	13	12	14	14	16	6	18	12	13	12
GTACGTCGTACTCAGT	ref_2283_fdr	23	24	13	15	23	16	29	12	25	10
TTTTCTTAGGGCCAAC	ref_2283_fdr	89	128	115	61	133	98	127	99	140	84
ATAGTTGACTTGGTCA	ref_2283_fdr	10	19	11	5	18	15	14	11	25	12
AACTTTGCATGTGTCT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TCATGCTTTGCGCATG	ref_2283_fdr	33	57	37	22	55	31	53	39	56	37
CGGAGCACCGTTGCCG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
ACGCTATTCGCAGTAC	ref_2283_fdr	17	31	14	15	23	10	16	19	27	12
ATAGCCCTGCGGCGAC	ref_2283_fdr	34	30	24	15	24	21	25	17	27	15
GTTTTGCCTACACGAA	ref_2283_fdr	11	11	16	16	26	12	18	12	20	8
AATTCAAGCGTATGTA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CACTGAGGAATTCAGC	ref_2283_fdr	36	75	36	29	72	33	66	41	61	32
TGCCGAGCTTTCCGCT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TGTTACATTTTGTCAC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CATTCGTGCGCGGGTA	ref_2283_fdr	12	14	10	10	16	14	11	17	13	9
GTATAACTAGCAGCAT	ref_2283_fdr	10	22	7	19	27	16	30	17	12	7
GGAATCCTATAGTCTG	ref_2283_fdr	21	24	18	11	23	14	30	17	38	9
CAACAATCTTTTGGTT	ref_2283_fdr	0	0	0	0	2	0	3	2	3	1
AGATCTCGTGCGGTGC	ref_2283_fdr	20	24	17	14	29	17	18	13	33	11
GCAGGCGAAATGTTTC	ref_2283_fdr	102	135	114	105	127	120	119	91	157	84
TCTTTCGGTTTCTCTC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
GACGGTATGCAGCTTT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGCCCTCTGCGC	ref_2283_fdr	1	10	7	2	15	2	13	4	10	6
GATGAGCGAGAGGTGT	ref_2283_fdr	1	7	9	6	13	3	8	5	5	3
CGGCCAGAGATGCTAA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCTCTGCGGCTAC	ref_2283_fdr	1	6	10	1	7	0	6	6	8	2
AGGGGATGGACAATCA	ref_2283_fdr	3	4	3	2	7	3	3	4	3	3
AACTGCATCCAGTCAC	ref_2283_fdr	22	28	24	26	34	31	25	22	40	25
TTGGCACGCCCTTCCG	ref_2283_fdr	6	7	8	2	4	7	9	4	7	7
TGCTGGGTTGTCCTCG	ref_2283_fdr	4	10	1	4	6	1	7	8	5	7
ACCCCCGTGTTTGGGT	ref_2283_fdr	32	35	34	24	32	21	42	23	33	16
CCTAGACTTCTTTTCA	ref_2283_fdr	0	5	3	1	6	1	8	4	8	2
TCTTCCGGTCATCGCT	ref_2283_fdr	5	8	7	12	12	12	6	9	12	6
GTGCATAGAGCGTACG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TGGAAAGAAAATTCTA	ref_2283_fdr	7	6	5	7	8	8	7	3	5	5
CCTTTTTCACGGGGTC	ref_2283_fdr	6	10	8	0	5	4	9	1	8	1
CCACCGCTTGTCTGAT	ref_2283_fdr	37	62	35	23	47	25	62	19	67	24
TTATTAATCACTCTTC	ref_2283_fdr	16	14	13	9	18	11	9	8	10	9
TGACGCCTCAACCCTC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTGGGCCGCCCTG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
AGTAACCCGCCCGCCT	ref_2283_fdr	19	26	25	27	32	37	40	29	29	24
CGATTTAAGTCAGACG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTATAGCCGAACA	ref_2283_fdr	41	64	35	46	63	41	82	31	67	43
GGTCCTGGCTGCTAAG	ref_2283_fdr	3	0	2	0	1	0	0	0	1	0
CCTTGTCCTTCGCATA	ref_2283_fdr	4	31	6	11	25	8	25	7	28	6
TCGCGTCGTGGTCTTG	ref_2283_fdr	42	66	54	34	47	43	72	36	65	45
GAGAAAATGTTCTGCA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
AACATGGCTCTGGCCT	ref_2283_fdr	16	18	7	9	15	7	18	12	14	16
AGTGACAACCGGTTGA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGGGAAGTCTTCC	ref_2283_fdr	33	40	22	25	29	27	30	28	41	27
CCCTTGTCCCCTGGTG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CTACATACGCATAATT	ref_2283_fdr	8	6	6	7	14	4	18	3	8	4
TCGCGTAACTTCACGA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
ACAATATCGTGCTTAA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTGGGTTACTTAC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTAGCGTCCAGGT	ref_2283_fdr	59	80	56	69	65	49	80	52	88	47
GGGACGCCCCCCGTTA	ref_2283_fdr	12	45	19	14	45	11	28	10	36	8
TGTACACCCCTGCCTC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
AACCCCGATGTATAGT	ref_2283_fdr	6	11	7	4	9	9	9	7	16	6
ATTGGTGGGTTGTCTC	ref_2283_fdr	24	24	11	19	19	8	21	20	21	11
TGATATGTCGTTTTTT	ref_2283_fdr	6	10	5	10	5	1	19	4	12	9
CTTTTAGTCAGCGTCT	ref_2283_fdr	38	78	61	45	82	32	107	39	80	26
TGCTCATCTCCGACCG	ref_2283_fdr	20	43	17	13	28	13	26	18	36	22
AATTCGCTAAGAATTT	ref_2283_fdr	16	32	21	26	38	20	41	23	32	23
ACCTATTCAACTATGA	ref_2283_fdr	2	4	3	11	7	5	11	4	5	1
GGTTTCCTGCTTATTA	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGTCCCGAACTAG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTCCATCACGGC	ref_2283_fdr	88	21	91	56	23	63	33	47	23	69
TCCCTGGAGAGGGGGT	ref_2283_fdr	23	52	44	33	54	28	57	37	63	35
GCGATCGGGGGTATCT	ref_2283_fdr	67	75	87	44	64	46	96	46	83	57
GTGCGCAGCCCTTGAC	ref_2283_fdr	24	37	38	30	40	17	43	24	45	23
TCTAGGATTATATGCT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTGCCAATGACTT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
GGGCCATCTCACCTAC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTCCTAGCATGC	ref_2283_fdr	46	73	44	42	78	33	72	32	76	34
GTCCTCTATTCCTCAC	ref_2283_fdr	4	14	15	18	13	17	13	7	15	11
GACATGTGTTAAAGGG	ref_2283_fdr	2	8	0	3	10	6	4	3	4	3
ACTGCTCATTAGTTAA	ref_2283_fdr	10	15	9	15	13	6	6	3	16	9
ATTACTTAAACCCGTC	ref_2283_fdr	35	63	47	24	47	22	57	15	54	36
ACGACTTGCTTCACCC	ref_2283_fdr	3	34	3	6	19	7	15	5	20	5
GGTGTGTGTTCATCCT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGCACGTTGTAAC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGCTCCTCTCATG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CAGCCGGTGGGGTAAT	ref_2283_fdr	7	17	9	8	14	5	11	10	17	8
CTAGCGGATTAATAAG	ref_2283_fdr	47	96	56	64	84	55	107	49	76	45
TCGCGCGTCAAGTGTG	ref_2283_fdr	3	3	4	2	6	1	3	1	5	1
TCGTTGAATACCTTCA	ref_2283_fdr	23	31	17	17	19	17	20	17	26	21
GCTCGCATTGGCAATC	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
CACTCACTGGTATGAG	ref_2283_fdr	8	6	4	8	14	2	8	5	19	7
ACCTCATCCTCCCTGT	ref_2283_fdr	1	1	4	3	3	1	1	4	1	1
CTCAAATTCCACGATC	ref_2283_fdr	1	1	0	0	0	0	0	0	0	0
GCTACTTTTCGACTTT	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGTTACTTACCG	ref_2283_fdr	0	0	0	0	0	0	0	0	0	0
TCTTACTCCTTGAATT	ref_2283_fdr	9	24	20	15	20	16	8	5	14	13
TTGTATGTGTGCTAGG	ref_2283_fdr	0	1	1	2	1	2	2	0	5	0
GAGAAGAAAGGTTCTT	ref_2853_reverse	81	33	92	83	39	85	34	98	35	78
TGTTACTAGATAAGCA	ref_2853_reverse	162	49	174	177	62	166	47	168	68	147
TTCCCTGGCCACAATG	ref_2853_reverse	1033	396	1334	1066	341	1034	436	855	415	868
GTTTTCAAGTTACTCG	ref_2853_reverse	165	51	200	165	49	143	50	136	61	139
CCTGTGGCCGCCCAGG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCGGATCCTCCCC	ref_2853_reverse	5	12	6	10	12	8	6	5	22	6
CCTCGCAGTTTCACCC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ACGTGACATCCACTAC	ref_2853_reverse	93	39	112	110	37	96	45	107	49	92
ATATTTTGGTGGTCGC	ref_2853_reverse	55	20	75	70	20	59	27	47	21	63
CGACTGTCAGTTCATG	ref_2853_reverse	4	3	4	4	5	7	4	7	5	6
CAAGATCCAGGAATTC	ref_2853_reverse	82	37	125	94	41	102	44	101	49	99
TTCAGGGAAGTCCATA	ref_2853_reverse	92	36	121	90	45	89	42	106	45	107
CTCGCCTACAGCGGCC	ref_2853_reverse	20	18	31	36	27	17	20	24	21	29
CACCTTGCTCACATCC	ref_2853_reverse	54	25	68	61	25	69	25	59	24	69
TTATGTTAAGCATGGG	ref_2853_reverse	585	219	695	578	203	555	199	508	205	544
CCAACAACCCCCTCAC	ref_2853_reverse	164	77	232	222	71	190	62	203	80	175
AGTCATCAGTCCATCA	ref_2853_reverse	120	36	126	125	48	104	27	114	37	95
ACCGATCCTGTTGGAT	ref_2853_reverse	150	33	195	161	47	143	61	137	54	139
TGTTTGGGGTTTAGTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGCAATATTGCCC	ref_2853_reverse	3	0	6	4	0	3	0	1	1	5
TTTTATGGGTGTTACT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
GAGGCATGGAGAAGTG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TCACCGTTTCTTACAC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTACTTTATGCC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCGGTGTCAACTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCACATTTTAATC	ref_2853_reverse	114	65	152	148	72	121	99	118	87	93
GCCACAAATGCGTCTC	ref_2853_reverse	0	0	0	2	0	1	0	1	0	3
AAGGGACAGCTACCCA	ref_2853_reverse	62	16	60	58	16	60	15	51	26	48
TGCGTTGACTGGGCTT	ref_2853_reverse	152	64	156	149	54	103	75	115	51	127
TAGTCCGGATAGATTT	ref_2853_reverse	125	35	110	84	48	91	40	86	35	110
GTGGTATTATATCGAG	ref_2853_reverse	324	134	354	288	92	270	140	244	125	297
CTGTACGAATCCCGTG	ref_2853_reverse	26	10	29	21	14	21	8	20	8	20
GTCGTGATGATTAAAG	ref_2853_reverse	17	2	8	3	4	9	2	11	2	6
TTCAAAATTGGGTACC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGTTCTACACAGC	ref_2853_reverse	74	43	113	91	33	99	45	71	37	86
GTGTAGGCTAGACAGT	ref_2853_reverse	36	7	31	23	10	23	8	20	16	27
TGGGTTCGCAATTTTT	ref_2853_reverse	123	47	153	132	33	142	48	136	56	96
TTGGCTCCGTTCTTGC	ref_2853_reverse	63	28	77	68	27	54	25	68	25	68
CTTCGTAACGTTTCTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGCAGTATCGCCG	ref_2853_reverse	46	17	51	51	19	49	14	42	16	47
CCCATGTGAGGGCCAT	ref_2853_reverse	76	28	78	71	23	54	18	52	20	51
CCATCAAGGTATTAGT	ref_2853_reverse	46	10	53	28	9	40	17	41	13	37
TACCTTGCTATAGCCC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTATTTGTCCATT	ref_2853_reverse	33	13	26	34	11	25	10	17	15	27
TCTTTTTATCAGTCGG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTTATTCACCCGC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTACCCCTAACCTTAG	ref_2853_reverse	185	58	230	162	77	163	88	165	54	165
CTACTTCCCCTGTCGT	ref_2853_reverse	0	4	0	1	1	3	1	0	3	0
GTTATTATTACATAAG	ref_2853_reverse	225	79	269	263	87	229	92	219	86	221
TCGATTCACAGAGTAC	ref_2853_reverse	35	33	38	30	33	45	38	28	34	25
GGATACAGATCAGTGC	ref_2853_reverse	90	31	116	80	26	103	44	85	33	102
CCATGCCGAACCCCTC	ref_2853_reverse	22	23	39	38	49	42	46	27	43	40
GGAACATTATCTAAAG	ref_2853_reverse	31	13	46	40	8	28	6	27	11	30
TGTTACTGTAGCTTCG	ref_2853_reverse	43	19	54	40	7	38	17	55	24	37
TGGCGCTGTTAATAAA	ref_2853_reverse	31	15	45	53	23	51	14	35	19	31
TTATGGTTAGAATTTG	ref_2853_reverse	49	15	76	47	17	45	23	58	28	50
AGACTCTCTGCTTGAC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGCGTTTATGACG	ref_2853_reverse	109	50	162	126	70	121	49	126	66	86
GCTTTCGCGTCTCTCT	ref_2853_reverse	29	19	40	36	10	24	18	39	16	45
ATTACACGTTTCCCGA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
AAATAGAAATTGACTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTCATTTTGTGT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TAATTATTGTCAGCTC	ref_2853_reverse	119	42	132	124	41	105	64	107	47	98
TGGGCTTTCCTATATA	ref_2853_reverse	21	8	22	31	6	23	9	18	2	13
GCATCTGCTACACACC	ref_2853_reverse	55	22	66	62	27	53	20	55	26	46
CGGGCCAGTGCGTCAG	ref_2853_reverse	178	58	264	186	67	183	65	168	79	206
TCATAAACCAAACGTC	ref_2853_reverse	163	61	216	162	53	171	80	160	67	171
GAAGCTTACAGTTATG	ref_2853_reverse	134	39	122	122	44	112	47	105	53	117
CGGATGTCGGGAGGCG	ref_2853_reverse	231	91	270	222	78	251	97	223	80	169
CACGGTCCAAGCGTCA	ref_2853_reverse	66	27	105	93	47	62	28	59	29	76
TTGAACACAAATAAGT	ref_2853_reverse	78	30	83	93	35	88	36	64	23	82
CGGATGGGACGCAATC	ref_2853_reverse	17	2	14	17	4	12	6	12	12	13
CATTGAATCGTCCGTG	ref_2853_reverse	123	38	133	102	37	97	55	101	67	95
CTCCTGACTGGTGGAA	ref_2853_reverse	11	3	7	11	10	12	9	8	3	16
TGATGGAAGAGAAGTG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTGCGTGCCATT	ref_2853_reverse	88	40	91	86	32	78	34	78	39	80
TCGGTTCAACCCGCAC	ref_2853_reverse	90	26	106	91	24	90	31	76	31	88
CGTGTTCGTTCTTAGT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTACGAATTACTCTTC	ref_2853_reverse	372	124	453	396	118	370	170	375	119	366
ATTTTTTCTTTGAGCA	ref_2853_reverse	323	102	402	312	109	332	125	334	103	265
AATCGAGCAGTATTTC	ref_2853_reverse	38	14	63	47	12	42	12	37	12	18
AACTTAAAACCTAGGG	ref_2853_reverse	122	32	132	124	51	135	48	105	42	115
GGTCGGTGGGCCCATG	ref_2853_reverse	25	10	31	23	15	22	10	32	10	32
TAGGTAGTTTTGTGGG	ref_2853_reverse	57	28	86	80	28	66	26	74	27	60
GATTGGATGTACTAAT	ref_2853_reverse	170	60	214	211	78	192	80	157	85	132
CTCGTAGTACCAAGCC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGTGACATCAGTC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCAACGTATGGTA	ref_2853_reverse	43	13	43	38	20	40	19	28	19	48
TCTTTAGTTGCATGTT	ref_2853_reverse	64	44	107	80	42	80	28	92	36	78
TTAACTATATTGGACA	ref_2853_reverse	89	35	119	130	30	76	42	84	30	84
GCATCTATACACCACC	ref_2853_reverse	11	2	11	10	3	10	3	7	1	6
ACCAGTTAGTTATCTC	ref_2853_reverse	1	1	9	3	3	4	1	8	0	6
CTAGGGTTATTGACTC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTATGCTACGAACTAC	ref_2853_reverse	167	57	163	165	63	149	56	125	61	111
CTTTACAGAGGTTTGT	ref_2853_reverse	26	12	39	31	7	28	16	31	16	33
GTGCGTCAGTACTGTG	ref_2853_reverse	69	30	107	89	33	66	36	88	33	77
TTCTCCCTCCGGGTCC	ref_2853_reverse	170	41	160	154	49	138	58	139	64	112
TCTACGGCCTCTATTC	ref_2853_reverse	3	1	5	3	0	6	1	1	3	3
AGTTCGATTTAATGGG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGAGTGGTGATCA	ref_2853_reverse	30	21	64	57	15	47	20	39	18	53
GGGCACTGTGGAGCCG	ref_2853_reverse	29	4	26	36	14	27	13	26	15	20
GATTTTCCTCTTGGCG	ref_2853_reverse	61	22	75	69	26	59	18	72	30	78
GTAGGTATGGAGTTAT	ref_2853_reverse	6	4	2	5	0	4	3	3	0	6
TCAAGTCAAACCGTAG	ref_2853_reverse	59	20	50	46	22	42	25	47	41	44
TTGCTCTTGCGGCTTA	ref_2853_reverse	17	5	13	15	0	18	7	20	8	15
GGTCTTAAAACAACTG	ref_2853_reverse	149	59	166	186	53	172	58	156	57	149
TCCGATAGACGATGTC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTTCCCGTTTTGA	ref_2853_reverse	177	113	245	206	111	180	95	178	89	157
GCAATTCTGCTCCGTG	ref_2853_reverse	97	43	125	90	44	70	53	60	43	75
TCACCTCAAGGCCGTA	ref_2853_reverse	44	16	52	52	21	49	28	55	23	46
CTTAGTCTTCTGGGAG	ref_2853_reverse	16	9	31	17	9	22	8	12	12	25
AGCGCCCCCGCACAAG	ref_2853_reverse	17	5	21	15	9	16	7	14	10	16
CCCAGGCTCAAGGTGC	ref_2853_reverse	35	13	50	49	20	38	12	34	23	47
ACATCGATGTTTCTCA	ref_2853_reverse	34	12	31	29	12	39	16	22	18	32
TTTTCCAACGTGATCG	ref_2853_reverse	46	15	51	25	19	28	15	33	23	34
TTATGCCTTCCTCCTC	ref_2853_reverse	5	8	9	6	8	3	1	9	3	6
TTCCCCGGGAAGGTCT	ref_2853_reverse	5	8	9	7	5	4	6	7	5	3
GGCTTCACACTAACGT	ref_2853_reverse	153	61	202	175	72	161	66	165	77	176
GTCATGACGTGTTTGA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGCCGGAATTGTC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTAATGTGGTCCA	ref_2853_reverse	90	37	132	99	39	119	39	105	38	95
ACATGTATAATTTAGC	ref_2853_reverse	60	22	73	75	24	69	23	53	23	71
CGGAATGTATCGGATA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCCGGATGCGCTG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTCGTCCTTCTTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
AACAGTACCCTCTCGG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGCTCGTTAGACG	ref_2853_reverse	29	12	63	45	10	35	21	44	15	32
TCACTTGTTTTCGGTA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTTTCTTGTTTAA	ref_2853_reverse	47	20	41	37	15	30	20	45	16	48
TTGGGGTTGTGAACGT	ref_2853_reverse	53	30	84	51	28	72	37	57	20	60
GGGCCTTCAAGATGCA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTCACAGTAGATGCCA	ref_2853_reverse	18	8	33	26	11	26	14	22	8	23
AAGTGCTCCAGTTAGG	ref_2853_reverse	1	1	0	2	0	0	0	0	0	1
AATGCGCCATGTTAGC	ref_2853_reverse	110	55	184	132	35	142	45	105	53	128
CTTCCCCAGGCAGTCC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TCTCAGTGGATTATGC	ref_2853_reverse	172	66	178	151	55	151	53	151	63	137
CCTCGTCAATCCGAGT	ref_2853_reverse	59	36	92	52	21	79	32	61	41	57
ATGCCGTGCTTGTCTC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCTGCGTGATATATTA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTCTCCCCTCGGG	ref_2853_reverse	9	16	15	9	11	13	15	8	10	3
ATTGAGATCTTTTTAC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATGTACCGATCTTTCG	ref_2853_reverse	29	9	42	28	10	43	15	34	12	29
GCAATGTCTGAGTGTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TATGAGAATTACACTA	ref_2853_reverse	116	40	142	137	46	124	49	115	54	122
CGCCCCACCGATTTCC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCATCCCGTGAGA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTGAGCATGTAT	ref_2853_reverse	49	23	60	48	16	43	28	44	19	33
CAGCTTTAGTTTTACC	ref_2853_reverse	318	104	395	300	138	303	135	311	127	274
TTCAGCCGTCAATTGC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCCAGGTCTGTTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTTTTCCGGGTAC	ref_2853_reverse	165	52	175	129	60	147	45	120	66	136
ACTCCGCTAAGCATAC	ref_2853_reverse	11	3	11	9	1	5	4	7	2	4
CCACCCGTACTTTCGG	ref_2853_reverse	41	8	46	39	14	35	17	42	13	34
GGACTTACCCGCAAAG	ref_2853_reverse	3	4	12	5	6	4	4	6	4	2
TTATTTATGTTAAATG	ref_2853_reverse	139	40	184	146	37	153	44	143	30	149
GGCTAGGGACTAATCA	ref_2853_reverse	85	23	102	76	38	79	23	89	28	69
CGTACTTTCACCATCT	ref_2853_reverse	176	67	253	194	57	202	62	198	85	189
TTCGTCGGAATCGATG	ref_2853_reverse	43	15	51	38	10	53	15	51	16	45
GCTGGAATTGCGTATC	ref_2853_reverse	58	12	50	59	24	45	14	46	25	62
ATAAAAGTTCGTCAGA	ref_2853_reverse	33	21	43	36	7	28	25	40	15	29
GCCCAGGCCAGCTCGA	ref_2853_reverse	28	11	36	16	6	24	12	27	11	16
CACTTCCATCTCAACA	ref_2853_reverse	43	26	32	28	26	39	17	35	19	25
TGCCCCTCCGTTCAGG	ref_2853_reverse	6	8	11	16	4	13	1	14	4	8
CTGTTGTTTTGGGACG	ref_2853_reverse	227	105	304	263	97	262	115	217	113	227
GTTTTACGCCAGGCCG	ref_2853_reverse	102	30	152	114	40	100	31	95	28	84
CCTTCGTTCCCGACAT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCTTATAAGGCGT	ref_2853_reverse	33	7	31	33	9	20	10	23	6	33
GAGCCGCGGCTGCCCC	ref_2853_reverse	26	27	35	39	23	17	26	34	30	15
TCCGTCCTATTCAAAA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTATCGATTGATCATA	ref_2853_reverse	456	140	528	387	145	412	121	401	144	398
TATTATTCCAGCCGGC	ref_2853_reverse	90	34	128	79	37	89	37	69	31	89
TCGGACTTCTCGCGTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTGGTCCTCTTT	ref_2853_reverse	16	4	8	9	3	11	4	7	2	6
AATTGGCATACGTTAT	ref_2853_reverse	113	56	140	139	63	107	70	96	70	83
CAGCATCCAGTTTCAG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TACAGGGTTCTACAAG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCCTATAGCGACC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGGTTTAATATTC	ref_2853_reverse	12	2	20	11	7	4	4	8	7	12
GTGTAATACAGCGTCG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCACCCGGGCTAGTTG	ref_2853_reverse	136	54	168	124	42	120	62	134	44	127
TGTGAAATAGAGTCAG	ref_2853_reverse	142	60	149	107	54	111	51	107	54	105
CGGGAAGAATTTTGAA	ref_2853_reverse	128	34	149	120	39	123	43	115	41	127
CGTTGATTTGGCCCTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCTGGTTGATTTC	ref_2853_reverse	41	33	42	35	35	21	30	48	27	38
TCATCAGGTATTCCCT	ref_2853_reverse	63	19	70	76	18	63	19	51	20	54
GCCCCCTTGTTTTAAG	ref_2853_reverse	33	10	29	34	11	18	9	21	14	33
TCTCTATCCCATGTTG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTTTCTCATCGTG	ref_2853_reverse	107	33	135	125	54	124	61	121	46	111
GGTGGTATATAAATGA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATCTAGTACCTCGGCA	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGAAAAAAATAGA	ref_2853_reverse	39	23	51	47	25	38	21	36	19	45
TCTTTGCCTTTTAGGC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CTACCCAATGAAGTGG	ref_2853_reverse	56	45	103	95	54	82	50	91	46	72
AATATCCTGCACGGGT	ref_2853_reverse	14	8	31	27	16	29	14	25	6	26
GTCATACTATCTTGGT	ref_2853_reverse	12	4	15	11	4	9	6	14	5	14
CAAGTCGTGGGGCGCC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
AACTTAATTATTTGCG	ref_2853_reverse	83	42	112	118	30	68	24	67	38	64
TTTCGCCGGCATTGCA	ref_2853_reverse	89	30	81	86	36	83	41	86	36	65
GGAAATCATTATTGCC	ref_2853_reverse	8	9	12	12	8	9	2	9	8	7
GCCACCTGCAAGGCTT	ref_2853_reverse	5	4	4	8	6	8	2	5	3	4
AATAGAGTTGATCTAC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGATTTTGATACT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
CCCCATGTTTAGGCGG	ref_2853_reverse	117	56	144	132	39	114	63	113	51	133
TTCGCCCTTTAGTGGT	ref_2853_reverse	277	124	350	291	126	258	100	264	138	287
GTGCTCCCCTGGATTT	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
ATACGCTTCTTGTCTG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCGCGCGTCTTGA	ref_2853_reverse	29	28	42	51	20	43	22	36	23	50
TCTAGACTAACACCAG	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTCTCTGCTTGAC	ref_2853_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTATCATACTACA	ref_2853_reverse	31	21	43	35	17	31	26	43	21	27
TCGGAATTTTGTGTAG	alt_5322_reverse	8	37	17	20	29	11	30	8	41	6
GAACTTGGTTCACATA	alt_5322_reverse	19	46	32	22	48	24	47	27	58	18
GCGTGCAGCTTAACTT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGTTATACACGTTAAA	alt_5322_reverse	26	29	31	12	47	20	28	14	30	17
TTATACGATCAGCAAG	alt_5322_reverse	51	92	58	48	95	56	93	34	77	44
TTATGCCCTGGTTTCG	ref_5322_reverse	168	225	190	141	246	135	253	125	239	136
ATCCCTGCTGCTGAGA	alt_5322_reverse	19	31	35	18	17	16	25	11	39	20
CTCATACATAAAACTG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACTCCCCACTTTTAGG	alt_5322_reverse	14	172	22	14	183	18	211	15	223	6
ACCTGGATCTGCTAGG	alt_5322_reverse	13	26	13	11	41	7	21	14	52	10
TCCAGACGTATCAGGT	alt_5322_reverse	15	21	14	22	15	15	27	8	34	6
TTTTTCTCCCTTTTAC	alt_5322_reverse	7	16	7	5	6	4	22	1	26	5
TGTGCCTGACCCCCCT	alt_5322_reverse	5	6	7	8	10	5	7	6	6	3
AAATGCAAGGTTCAAT	alt_5322_reverse	13	17	11	14	17	10	17	18	17	9
ATATTTAGTCCGTATA	alt_5322_reverse	15	20	14	11	34	15	25	15	26	16
GGTTGGTTGGAAACGC	alt_5322_reverse	20	19	24	14	31	21	45	13	38	15
ATGTCAGCTTAGTGAC	alt_5322_reverse	43	98	54	46	118	51	93	48	101	46
GCTATGCTTTTTCTAA	alt_5322_reverse	44	71	40	45	76	45	83	45	81	38
CTCATCTAAATCGCGG	alt_5322_reverse	10	36	22	20	44	14	24	27	51	17
GATATCTTTGTCGCTG	alt_5322_reverse	26	59	48	34	49	28	41	34	60	23
ATTCTGGTGAGCGAGC	alt_5322_reverse	53	111	68	49	102	46	99	54	110	45
GGTGTTAAGTTAGACG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGGATTTCAGCAC	alt_5322_reverse	38	44	53	36	62	34	68	30	80	42
ATCCACTCCTTCTATG	alt_5322_reverse	1	4	4	1	9	0	6	0	7	0
TACGTTGTAGGTGCCG	alt_5322_reverse	10	11	3	9	8	7	6	8	15	7
GGACGAGGCCAGGGGT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CACACTCGGTTTATGA	alt_5322_reverse	4	27	5	7	23	5	29	6	39	5
GCCGACGCCTATTGAG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTATGGGTCCCTT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGAAGTATTGTGT	alt_5322_reverse	5	8	5	4	17	2	9	6	8	8
AACCGCACTTCTATTA	alt_5322_reverse	6	22	8	13	25	6	16	7	22	4
CGCGCGTCCCGAGCTC	alt_5322_reverse	22	38	35	33	39	34	50	35	45	24
TGCGGGACGCCTTTAA	alt_5322_reverse	2	3	3	5	6	1	5	1	1	0
ACTCTTACTCCGCAAT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAGTTTTGCCCCC	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TGAATCAAATATCTAC	alt_5322_reverse	18	72	38	30	58	41	55	27	51	34
ATCTTTAAGGATGGAG	alt_5322_reverse	8	21	20	20	20	14	36	10	39	22
ATTCCGCGAATACATC	alt_5322_reverse	14	25	15	12	17	12	13	12	19	17
CTCCAGTTATCCGTGT	alt_5322_reverse	5	7	7	3	6	5	2	3	3	3
ATCCTGCAAATCAATT	alt_5322_reverse	9	8	15	8	11	7	7	4	8	14
TCTATAGTAGTGTTTT	alt_5322_reverse	11	18	16	7	31	6	16	11	32	6
GCTGGTTATGTGTACG	alt_5322_reverse	139	335	198	169	305	152	331	147	329	148
ACTTGTCCAACAGTTT	alt_5322_reverse	64	116	78	70	110	52	118	65	122	58
TACCTTATTAAATCTT	alt_5322_reverse	6	26	8	4	24	3	29	6	23	7
GCATGACTAGGTCCCT	alt_5322_reverse	10	34	10	24	27	10	24	8	37	13
CTATCAGTCTTATCCC	alt_5322_reverse	0	2	0	0	3	1	6	0	6	0
GTACTAGAGCAGTGGG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCTAGTGTGGATA	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTCGAATTGCTG	alt_5322_reverse	35	40	33	32	58	33	51	22	51	22
ATAGCGCTTACCCTAC	alt_5322_reverse	18	27	14	12	31	9	21	20	29	8
CGATCGTCTGCGTGAA	alt_5322_reverse	23	27	25	10	32	16	28	11	29	12
ACCCCAGCGAAGTGAC	alt_5322_reverse	2	5	7	5	15	6	23	4	18	9
GGTCATCGGTCTTTAA	alt_5322_reverse	2	32	12	8	42	5	33	1	47	4
TCAGTTATTACGAGCG	alt_5322_reverse	35	54	36	43	55	29	70	39	68	25
TAACTGAGGCTCCGGC	alt_5322_reverse	16	25	29	19	26	17	27	18	40	24
CCCACACCCTTATAAC	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGCGAACAAATTG	alt_5322_reverse	21	33	43	37	39	30	37	20	49	18
TCCCAAGGTAGAGTAC	alt_5322_reverse	113	189	128	99	186	133	247	107	212	78
TTTGTTCCCCGCCAAG	alt_5322_reverse	4	16	8	9	27	7	15	9	13	7
TCACTGTGTGCTTGTT	alt_5322_reverse	4	14	11	7	20	8	13	8	16	1
TTGAGAACGTCCCTCT	alt_5322_reverse	13	27	9	11	17	9	17	13	23	5
TAATCGGATCGCAATT	alt_5322_reverse	14	33	11	11	29	6	23	24	26	14
ACGGGCACAAGACGCC	alt_5322_reverse	27	39	32	20	34	21	26	17	29	23
ACGCCAGCATTTAGGC	alt_5322_reverse	28	38	29	15	38	21	34	29	45	23
CAAATCTCCGCATGTG	alt_5322_reverse	4	9	10	16	13	7	13	9	11	3
CACGTATACGTTCATT	alt_5322_reverse	11	14	13	17	22	14	26	13	27	6
ATTACTTACGCACATC	alt_5322_reverse	12	47	15	11	35	13	41	10	35	9
GAGTTGGGGGCTTTTG	alt_5322_reverse	69	97	86	65	92	52	103	41	110	50
ACTTCGCAAGTTGGAA	alt_5322_reverse	3	7	2	2	3	1	8	3	7	5
CACTCACGGGACCGTG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGTTCATTGCAGC	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACGATGGGTCATTTAG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCTGTCTTGCGAT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCAGTCACACCAG	alt_5322_reverse	20	42	37	28	35	26	43	15	36	26
GCCTGGTCCTGCCCAT	alt_5322_reverse	49	75	75	53	86	54	112	47	111	54
GTTTTGTTCCCGGTAC	alt_5322_reverse	23	40	28	30	44	29	47	24	70	34
TTTCAATAAATAAGAA	alt_5322_reverse	10	16	13	8	10	14	21	14	16	15
AGGTTGGCATTGGTTT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGGCATCAATTGGCGC	alt_5322_reverse	22	24	22	18	32	11	37	17	21	13
AGAATGACAGTTATTC	alt_5322_reverse	10	13	9	11	17	3	14	5	13	9
CGTGCATCATGTGATT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGGTAAACGTTC	alt_5322_reverse	33	53	47	41	62	44	82	32	69	25
TAACACATTGCCCATG	alt_5322_reverse	31	37	30	37	81	14	38	28	47	23
CACAGTCTGGCTAACT	alt_5322_reverse	5	13	12	7	12	6	12	4	9	6
TCCCTACGTTTAGCTC	alt_5322_reverse	47	74	72	56	91	56	94	48	114	44
CTCATTTCTACGTACT	alt_5322_reverse	5	6	10	9	9	10	10	13	18	2
CGTCAGCTTCTGTGCT	alt_5322_reverse	0	1	3	0	6	2	4	2	9	1
CGATAACCTGCCGTCT	alt_5322_reverse	5	11	8	0	17	10	14	10	12	2
TATTGTGATTTCGCAT	alt_5322_reverse	6	6	4	4	10	6	8	6	13	6
GTTTGTCCTCGTGATC	alt_5322_reverse	1	0	4	2	2	0	2	2	4	1
GTGTATAGTCCGCAGA	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCCGTTTCACAT	alt_5322_reverse	10	21	19	17	29	16	22	8	30	8
GACGCGGACACGCTAG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
GCGTATACTAACTTCT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCATCGCCACCCA	alt_5322_reverse	5	13	9	9	11	7	8	9	17	6
GCGGAATGCTCGTCCA	alt_5322_reverse	3	3	2	3	7	3	5	3	3	3
CCACTCAGTGGCCCTC	alt_5322_reverse	8	22	17	20	24	10	29	12	36	13
AAGTCATACGAAGCGA	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
AATTTTTCGTAACCTA	alt_5322_reverse	10	16	7	4	15	11	20	11	22	7
GTGGGCTGGCATTTGG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TCGGAGATTTCCGAAG	alt_5322_reverse	32	53	49	29	69	41	58	36	60	38
TAACCAGAACGCACGT	alt_5322_reverse	2	7	3	9	13	3	3	3	6	5
GCGCTATGCTCGCAAT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGTTGGGTTGAGT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCCTTGGGCTACA	alt_5322_reverse	27	55	40	31	67	18	58	27	61	26
AGGTTTTAGGGTCTTT	alt_5322_reverse	24	43	30	27	36	26	41	20	41	19
AGAATGATGATTTGGT	alt_5322_reverse	47	87	80	44	82	60	89	52	76	36
CGTCTGCATTTAACTT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CATACACTGAAATGAC	alt_5322_reverse	1	14	9	8	4	6	16	9	14	6
CTTTCCCCAGCTTCCA	alt_5322_reverse	13	24	20	18	22	14	13	20	28	12
TGATCGGTGAACCTGG	alt_5322_reverse	99	134	106	92	160	81	171	86	166	85
AGTTCCCTTGTCGTCG	alt_5322_reverse	42	62	44	47	65	49	68	59	85	32
TCGTCGGTCTGAATTG	alt_5322_reverse	21	21	13	20	33	26	33	15	21	9
TTGGATTAGGACCGTC	alt_5322_reverse	22	51	32	34	48	27	40	27	45	28
GTCGATATCCGATCCG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCCAGGTCTGGAC	alt_5322_reverse	32	66	27	36	69	33	77	37	77	37
CTTTCGGTCGCAATTT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCACAAATCTCTA	alt_5322_reverse	3	11	7	8	13	5	21	4	16	10
GACCTGCACGGAGGCA	alt_5322_reverse	35	39	37	34	44	25	31	37	52	36
TCAGGTTCACCTTGCC	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TACTGTTCTACGTATG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGTCAGTCATTGC	alt_5322_reverse	5	23	7	7	17	12	20	9	30	14
TCAATGGTGGTCCTGT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
GGTATCCAATTTACTA	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
AATCGTGTAGATATGT	alt_5322_reverse	9	16	10	8	19	6	23	7	23	5
TGTTCAAATACCTTCA	alt_5322_reverse	13	32	17	13	32	12	27	14	24	10
ATCTCGCTATATGCGG	alt_5322_reverse	10	13	5	11	8	6	20	8	15	4
GGACGCGGGACGCGCA	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGGGGTAACTTCA	alt_5322_reverse	7	9	3	0	12	2	15	0	8	8
GGTCCGGTCTGGAGTT	alt_5322_reverse	19	25	15	17	29	13	22	8	23	12
GGCCCGTGACTCCGCA	alt_5322_reverse	12	19	15	4	15	8	13	17	21	7
CCCCTGCCAGTAAGTA	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAACCTGTCTGTA	alt_5322_reverse	9	19	12	17	25	14	21	15	15	7
GACCGTAATCAGTCCG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TTGACAAGACGAGTCG	alt_5322_reverse	5	13	16	19	13	11	21	11	13	9
AACAAAGGAGTTAATG	alt_5322_reverse	29	48	46	28	32	42	55	31	50	36
GGTCCAGCGTAAGTTT	alt_5322_reverse	0	0	0	0	0	3	3	0	2	0
AATAGTATTTTTGGGG	alt_5322_reverse	19	30	25	25	24	14	30	12	33	18
GGCAACATGTGCTGAT	alt_5322_reverse	40	61	34	36	70	29	63	39	69	33
CCTCGTAGCGGGATGT	alt_5322_reverse	23	33	25	29	51	27	47	28	40	14
TGCTTTCAGACCATCC	alt_5322_reverse	14	35	18	18	33	22	41	16	33	15
GCCACCTTAGCAACCT	alt_5322_reverse	17	41	26	19	47	22	38	21	48	9
ATTGCTTTTTGTTACA	alt_5322_reverse	15	33	24	12	20	15	41	9	33	11
TGCTTTTCTTATCGTT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGGGTAGCGACTA	alt_5322_reverse	18	57	29	25	38	30	32	17	32	26
ATTGGTTAATGCACAG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTCTTTAGGCAAG	alt_5322_reverse	2	4	1	1	1	0	5	1	3	2
TTATGGCGGGCAAGTC	alt_5322_reverse	4	4	3	11	6	7	4	6	9	4
AAGATGTACTGATATG	alt_5322_reverse	21	28	27	18	30	16	40	22	41	15
TGGAGCGAGTACGGGG	alt_5322_reverse	21	20	19	13	7	11	21	16	20	15
ACTTCTCGAACGACAT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TGGTACAGACGCTAGC	alt_5322_reverse	25	48	43	41	36	22	45	26	31	36
CTTGACTTGGGCCTCT	alt_5322_reverse	45	101	49	48	72	30	88	31	87	26
ACTCTACTAATCGCAT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
ATCTACTTACGCCACA	alt_5322_reverse	9	13	1	10	15	3	19	4	15	7
AAGACTTCTCTTCCAC	alt_5322_reverse	32	47	49	35	57	28	51	34	50	27
ACTACATTGTAAACCT	alt_5322_reverse	21	31	25	26	38	20	40	15	35	17
CACCTGTTTGGCTCGG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGATGATCCCGTG	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTCACGGTCCATAAGT	alt_5322_reverse	3	5	8	6	6	5	9	4	13	6
TATAGTCCTATCACTA	alt_5322_reverse	24	66	37	43	64	36	76	29	67	29
CCATAAGTTAATTGTG	alt_5322_reverse	16	27	19	14	31	16	38	13	36	17
AGTACTGCTTCGTTGC	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
AAAGAGCGTTCGCGTA	alt_5322_reverse	28	46	21	27	44	22	52	20	48	19
CTCTTCGCCTATCCCG	alt_5322_reverse	6	8	14	2	13	6	22	6	17	9
CTCCTCGATCACAGAA	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACATGAGTGCACTTCA	alt_5322_reverse	5	2	1	2	10	2	8	6	9	0
GGCATCACGTCCGTAG	alt_5322_reverse	171	268	204	157	312	183	299	156	289	149
CTCTTGGTTAAGACTT	alt_5322_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTACCAGACTTAT	alt_5322_reverse	0	1	2	2	1	1	4	1	2	3
ACCCCGAGTAACCTGT	alt_5322_reverse	2	7	6	1	13	6	8	6	8	11
GACGGAAACCCTATTC	alt_5322_reverse	32	44	49	18	62	27	46	18	50	23
CACCTTGTCCTAAGGA	alt_5322_reverse	1	3	0	1	4	1	4	4	4	0
TGACGCGGACGTTCTA	alt_1338_RC	8	7	7	13	11	8	13	6	14	6
ATGCGTGCTATTCTCA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GGCGGGCGAAGCGGGG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TTATGGAGAGGACTTC	alt_1338_RC	19	35	30	35	36	19	48	28	44	24
TACTGCCTCTGGCTCG	alt_1338_RC	9	16	8	15	26	5	22	5	31	6
AAAACCGGGGAACAGT	alt_1338_RC	29	71	37	35	74	29	68	35	62	23
CCAAAATACGCCTTGC	alt_1338_RC	12	30	22	15	29	13	44	7	32	15
TTATTTACTTACGGTC	alt_1338_RC	0	6	0	3	10	3	11	2	12	3
TTTGGCTCCGATTCTA	alt_1338_RC	27	48	28	18	55	17	48	31	52	28
GTCGGAGGCTTCTTGC	alt_1338_RC	30	37	27	26	59	20	58	12	56	20
CTATAAAGCGGTGCCG	alt_1338_RC	9	15	11	4	19	3	11	11	18	7
ACATTCTTGGCATTTA	alt_1338_RC	12	30	9	13	28	7	38	14	29	8
TCTTTGTAGGGGCGCC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CCCCACTGTAAAAATT	alt_1338_RC	22	45	21	19	51	22	52	31	47	11
GGTATCGTTCGTTTAC	alt_1338_RC	4	4	4	4	9	3	4	4	16	4
CTCCCCCTTAACTGCT	alt_1338_RC	0	3	0	0	7	0	8	0	8	1
ATGCGTGCCCGCAGTC	alt_1338_RC	10	16	6	9	22	13	20	12	10	9
CGACCTAGGCATAGCA	alt_1338_RC	5	7	5	11	8	2	8	8	8	2
GGCGTAATTTCTTTCG	alt_1338_RC	11	23	20	21	28	17	43	11	31	13
GTGCTAATGCTTCAAT	alt_1338_RC	8	16	2	9	10	5	16	3	14	7
CAGCGAATATGACAGC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TACGATGGAAAGCCTG	alt_1338_RC	32	56	37	30	62	25	65	25	62	35
TGATGTTCGGTTGTTC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GTTGTAAATTCAACAA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
ACCTACACTTTCAGCG	alt_1338_RC	64	158	73	65	160	69	148	61	162	48
TTGTTGCTGCTTTTAT	alt_1338_RC	10	15	15	10	11	4	10	7	10	5
GTCTTTGCCTGCGCCC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TGTGTGCATACACCGC	alt_1338_RC	22	57	40	27	54	25	83	17	75	30
GATACCATATCGCGCG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGGTTGGGGTAC	alt_1338_RC	24	15	11	16	27	17	30	10	26	9
CCATAGATGTTTCCAA	alt_1338_RC	10	27	19	11	38	16	42	15	40	17
CAGCAGAATATCGTCG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CAGTTTTTCTTTTTGT	alt_1338_RC	59	105	82	73	127	87	150	60	129	65
CGGACCTCCATTTCTA	alt_1338_RC	8	20	17	14	15	8	23	22	22	11
CCGAGGCTGGAGCCAC	alt_1338_RC	0	6	1	0	12	1	4	6	8	3
GGTTACGCTGGATTAC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
AAGCAAATGGCGTACG	alt_1338_RC	2	4	8	1	7	6	6	5	5	5
TTGCGAGTGTCACCAG	alt_1338_RC	29	66	51	31	92	26	67	20	73	28
TCATCTATTGTGTCGC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GCCAAATGGCCATTCC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CAGAAATTTTATTACG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GCAGATGTAGGGGTCC	alt_1338_RC	8	31	23	5	21	21	38	15	24	22
AAGTCGTCTGGCTTCA	alt_1338_RC	13	30	15	23	25	18	21	11	33	12
GTACTTGTCCGCGTGC	alt_1338_RC	21	79	31	28	76	33	78	23	89	22
TACTTGTACAGGTGTC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CGATGGCGGCGGCAAA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GTTTTGTTCCACCGTT	alt_1338_RC	6	27	12	11	7	4	25	3	33	9
GGCCGGTTCGTTTCGT	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TGTAAACCGCTGCCTC	alt_1338_RC	9	26	29	16	51	24	45	12	45	9
ATGCTGCTGTTGGTCT	alt_1338_RC	34	49	41	23	52	28	67	27	44	24
CGATTCTTCTCACCTT	alt_1338_RC	15	39	29	19	64	15	35	16	55	20
TGGCCTACTTAGGGTA	alt_1338_RC	128	269	165	96	280	111	288	109	311	105
GTAGTGCTAACTCGTG	alt_1338_RC	10	45	18	12	36	12	40	13	34	5
ATCATAGCAACCTAGC	alt_1338_RC	6	4	6	3	13	6	5	0	9	3
TGTGGCTCCAGCATGT	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TATCGGTATAGTCCTG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TACCTGCGGCTTCTGT	alt_1338_RC	2	18	3	6	12	5	22	5	17	8
AGGTCTAGTTGTTGAA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
AAATGAAGACCACGCT	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TCCTATACGAGTCCCA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TTCCGTTACCACGGTC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GAATATGCACAAGGAA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CCTTCTGCTAATATCC	alt_1338_RC	12	28	32	14	34	21	35	24	27	24
TTGCATATTACCGCAT	alt_1338_RC	2	5	2	1	11	2	2	1	4	3
GATACGTGCTGGCCGT	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
AGCCTTTCTCTGCCTT	alt_1338_RC	0	1	0	1	0	1	0	2	4	0
GGCTTACTACCTTATG	alt_1338_RC	12	18	5	3	24	4	15	7	12	11
GCTCGGTCGTATCGTT	alt_1338_RC	18	62	39	32	64	30	38	25	55	31
TGAGTTTAATGTCGTT	alt_1338_RC	4	5	10	4	6	6	3	4	13	3
CGCTTGTTATTTATTA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
AGGTTAACGCTATTGC	alt_1338_RC	13	37	26	22	34	19	53	14	31	13
TCCTACACGCGGCACA	alt_1338_RC	14	33	17	14	36	18	37	13	44	19
GCATCTGTTATGCGGG	alt_1338_RC	18	17	17	14	30	10	16	15	35	7
AAAATAAAGCCCCTGC	alt_1338_RC	54	106	83	66	117	54	123	42	135	60
TCGCTTGGCCTCTCCG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GCTAGATGTAAAGCAT	alt_1338_RC	21	37	32	18	49	26	46	12	35	17
CGACACAATTCTAACC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CTACTCTGCCTCTGAC	alt_1338_RC	13	35	25	10	37	14	47	9	51	10
CAATCGTTGGCATATT	alt_1338_RC	9	12	5	5	21	9	10	4	22	5
CTCTATGTCCTTGTAA	alt_1338_RC	9	25	16	8	24	6	19	11	21	10
TGCATTGGACAGATCC	alt_1338_RC	55	87	47	49	74	34	66	33	68	32
CAATCAATTCGTCGGG	alt_1338_RC	2	10	3	4	5	1	12	3	4	8
AATGTCATTATTTTGT	alt_1338_RC	4	2	3	1	2	2	5	2	5	5
GTTCCTAGCTGGGGTG	alt_1338_RC	25	73	31	42	80	35	78	26	95	28
GACCAAATAGCGCGCT	alt_1338_RC	15	34	21	16	18	12	46	10	36	18
GTTTTGGGTTCGGATG	alt_1338_RC	48	116	84	63	140	61	130	54	153	44
CCGAAACAACACTACC	alt_1338_RC	6	28	6	6	16	4	9	7	19	2
TAGCATCGTCAGAGTA	alt_1338_RC	10	21	16	5	17	4	21	6	23	2
AAGTCGGCCGACTTGG	alt_1338_RC	17	48	20	20	43	22	55	20	43	16
CACATACATATAGATT	alt_1338_RC	35	73	52	53	82	32	92	25	80	36
CCTTAGACTTGTATCA	alt_1338_RC	19	87	28	28	87	27	79	26	76	24
GTCGCAGTCGTCATTG	alt_1338_RC	3	3	3	5	6	1	3	4	4	3
TACTGTGCTCCAATCA	alt_1338_RC	91	194	84	76	163	77	208	89	192	79
GACACATGCAGTTACC	alt_1338_RC	63	108	69	45	130	56	124	56	129	49
ACATGCCGGACTGTAG	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
TAGCTAGAATTGTGCA	alt_1338_RC	37	113	50	45	81	47	127	37	113	46
CGGATGCGCGTTATTA	alt_1338_RC	6	31	8	9	16	5	30	9	20	11
AGCCATAAAACTGTAA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
GCTAGGCACGAATTTT	alt_1338_RC	26	87	24	26	74	15	78	16	75	14
ACAGTGACTCGATACA	alt_1338_RC	25	66	47	27	58	12	52	26	72	31
CTATAGTGCTGGTCAT	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CCAAATTAGCCGTCAG	alt_1338_RC	5	13	4	5	11	0	20	5	18	2
TTTAGTATGGTTTTTT	alt_1338_RC	3	8	3	2	5	4	4	1	3	2
CTTTAATTTCATCTCC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
ATGTCTGTGTTGTATC	alt_1338_RC	22	39	34	19	39	15	47	12	45	18
CAAACATGGTCGTCAA	alt_1338_RC	21	54	53	27	59	42	47	19	39	21
TGCCCTGTGCTCTACG	alt_1338_RC	7	10	13	8	6	7	7	5	13	6
TTTGTTTACCCTTGTA	alt_1338_RC	40	98	70	54	99	58	115	38	96	40
GTAGGACCCTCTTTGG	alt_1338_RC	12	14	11	12	34	13	16	6	26	12
TCACATATTCTCGTCC	alt_1338_RC	9	19	7	11	28	15	31	11	17	10
GCGTGCGCTTTCTTAA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
ACTGCAGCTAAACCAC	alt_1338_RC	7	17	9	11	29	10	19	11	21	5
CGGTAGTTTCACATGA	alt_1338_RC	21	39	24	13	33	15	30	9	35	17
ATAGGCGCGTGTTTAG	alt_1338_RC	10	18	12	10	24	13	18	10	21	12
CTCAAGCTCCTCTATG	alt_1338_RC	0	13	3	1	5	5	9	2	11	4
TTCTCTGGCCTCATGG	alt_1338_RC	32	74	51	40	73	33	66	25	76	35
AGTTTAGTGCATGCTC	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
ATTAAACCCTGCGCTT	alt_1338_RC	6	5	3	4	8	5	3	5	6	5
GGTTCTCACCTTTCTA	alt_1338_RC	0	0	0	0	0	0	0	0	0	0
CTAACCCTTGAGTTCA	ref_3390_missing	96	224	103	102	225	102	262	77	220	75
CCTTATGCACGACCTG	ref_3390_missing	69	129	65	62	101	74	146	62	131	56
TTGTCTTTTTTATTCT	ref_3390_missing	1	1	1	0	0	0	0	1	0	1
ACTCATTAGAGATTCG	ref_3390_missing	1	7	2	1	1	3	4	1	2	1
ACTCGGCCCGCCCTCA	ref_3390_missing	4	5	5	3	8	10	8	4	15	4
GCCGACAATTGTCTGA	ref_3390_missing	16	18	15	10	20	14	26	11	26	10
CAAACCCTTGAGTTCA	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
CATAAACTCCGATGGT	ref_3390_missing	9	15	8	8	22	8	16	8	21	10
TTTCTGGCGATACTTC	ref_3390_missing	28	44	40	25	57	17	64	27	75	25
TCATTGCCCTTAGGTC	ref_3390_missing	15	12	6	5	19	5	22	4	21	8
GCGCTTCTTGTATAGA	ref_3390_missing	19	32	20	10	45	20	50	22	36	12
TGGTTTACATTGGCCC	ref_3390_missing	11	29	16	7	19	11	27	16	29	11
ACGATCGCCACCTGTA	ref_3390_missing	14	17	11	11	32	12	19	4	28	7
GGGTTGTTCGTACGGG	ref_3390_missing	12	30	17	14	25	13	28	12	28	17
AAGCGGCCTACAGACA	ref_3390_missing	30	51	26	19	59	26	61	28	58	15
GTACATCCATGGCCCG	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
GCCAATTCACATATCT	ref_3390_missing	12	39	30	27	48	27	29	17	46	17
ACCGTTTTAGATAAGG	ref_3390_missing	2	5	2	0	4	1	0	0	3	0
ACTGTTGGACGTTTTA	ref_3390_missing	0	1	1	0	3	0	2	0	4	0
GTATTTATCCTTCTAG	ref_3390_missing	14	29	15	10	21	14	25	12	33	8
GAGGTTGATTTCCTGA	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
GGCAGCTGGCACTATG	ref_3390_missing	21	37	22	16	46	22	46	17	43	15
AATACCGCAGTTAATG	ref_3390_missing	4	7	2	8	15	9	12	5	6	5
GCTACTGTCTGCTCAT	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
TTGTCTTTATCAGTTG	ref_3390_missing	78	156	96	65	153	67	153	85	166	69
CAACCGATAACGCGCC	ref_3390_missing	9	12	14	4	14	4	10	4	22	7
GATCAGGAAAAGTATT	ref_3390_missing	38	72	57	31	70	28	68	42	65	29
GCGCTACCCCATGATC	ref_3390_missing	17	28	23	16	34	19	39	15	31	15
TTGTCCAGTCGCCCAC	ref_3390_missing	4	8	3	1	7	1	10	0	5	4
ACTAGCCTGCGGCTTA	ref_3390_missing	13	23	10	8	18	8	23	12	27	10
CGTGACGGCCATCGCT	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
CGGATGTAATGGTTGC	ref_3390_missing	21	51	37	38	53	38	46	20	48	22
TACGGCGTTTTGGCGC	ref_3390_missing	0	1	0	0	5	0	1	2	0	0
ACGGTCCGTCCGTTTA	ref_3390_missing	3	6	1	3	3	2	10	3	8	0
AAACTTTGTGAGGTTT	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
AACTTTACGTAAGTCT	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
TGCGTTTTAGCCGGTT	ref_3390_missing	4	6	8	6	6	1	7	3	4	0
GCTACTGTCTGCGTAG	ref_3390_missing	2	7	4	3	5	5	8	1	13	2
ATGTAGTAGCATTGTC	ref_3390_missing	15	42	17	14	26	14	36	11	34	18
CAACTCGCTGTTACTC	ref_3390_missing	9	16	13	17	18	14	27	8	43	9
CACCCTATTACAGTTT	ref_3390_missing	9	3	1	6	13	1	5	3	14	2
AATCTGCCGTTTGGGC	ref_3390_missing	16	36	19	18	49	29	52	27	55	13
GGTCACCAAGCCCTAT	ref_3390_missing	5	16	3	3	14	4	16	2	5	4
AATAGCGCGCAAGCGG	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
TTGCCACGTGGTCTCG	ref_3390_missing	22	33	26	18	34	17	28	13	48	13
ACCACGCTAACCATGT	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
CACCCGGAACATACCG	ref_3390_missing	29	42	25	23	43	15	49	24	59	15
TGTTCCGTCCGGTATC	ref_3390_missing	0	0	0	0	0	0	0	0	0	0
CGTTAGGATTCCCCCT	ref_2290_missing	21	48	28	15	49	13	44	9	24	16
AAGTTTTGGAAGACTA	ref_2290_missing	8	15	10	8	10	12	14	3	9	4
GTAGTCACGTATGCGA	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
GCTGCAATATACTTCG	ref_2290_missing	57	106	71	64	98	60	117	57	93	63
AACGGGTTCACTATTC	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
CGGTTATGAAATGTTT	ref_2290_missing	3	10	8	6	5	5	9	4	12	4
GTCCCTTCTGCAAATG	ref_2290_missing	13	25	15	14	29	17	25	18	21	17
GGAAAGGTCCCTGTCC	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
CATGATACGTGTAAAA	ref_2290_missing	25	40	17	19	39	20	34	17	41	15
TAACTCTGGACGGCGT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
GCCGGGCGCGCGGCTG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
GCTACGGTATTTGATT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
ATTAATACCGTCGGAA	ref_2290_missing	146	217	141	109	250	146	246	145	251	118
ATTTTGTATATCTGTT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TTCTTCAAGCACCCTT	ref_2290_missing	9	27	15	8	27	7	38	15	25	8
CCCGTGACATAGGTAG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
CAAGGTTCAGTATGAA	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
ATACAGTACTTTGCGA	ref_2290_missing	7	14	5	6	6	3	6	7	8	7
TCATCGGGCTTAGGTT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
GGAATTCATATTTGTT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TTCGTAAGACAAGGCC	ref_2290_missing	22	13	8	7	13	16	14	12	12	10
TAGGATTGTTTTTCCG	ref_2290_missing	3	3	1	3	5	4	2	3	8	4
GTCTGGTTCACGATTA	ref_2290_missing	23	32	30	20	33	25	41	11	36	13
CTATGAAGGGTTAACT	ref_2290_missing	15	31	22	20	31	18	36	25	38	15
TTCGCACCTACTGGCT	alt_2290_missing	29	57	34	27	61	24	51	19	42	24
CTGTCTTTTATCGGGC	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
ATCTCTTCGGAAGTGA	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TGATTGCCTTTCTTCA	ref_2290_missing	11	26	15	9	44	14	28	11	24	12
TGCGTATTAGCTTAGG	ref_2290_missing	16	29	17	16	29	16	23	14	42	9
GTGTCCCCGTATTTGC	ref_2290_missing	34	77	25	27	52	21	82	15	90	9
GAGTATTACGACTTTC	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TAAGTCTCGTGGTTTA	ref_2290_missing	11	21	12	21	19	11	19	16	23	17
CTCCTGTTCGAATACA	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
AGACGCGTATATGGAG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
CTCACTGTTAAATTTT	ref_2290_missing	7	22	17	7	18	10	22	11	29	10
ACGCACTTTCTTGCAG	ref_2290_missing	18	42	31	35	55	18	59	35	53	24
GGTTTAAGTTTTGCAT	ref_2290_missing	0	1	0	0	0	0	0	0	0	1
ATACCCAGTATAAGCT	ref_2290_missing	16	23	13	12	34	10	22	16	34	11
GTCATTACGTAAGGAC	ref_2290_missing	2	1	1	0	1	0	2	1	1	1
TCCCACGCCTAGGTAA	ref_2290_missing	16	23	4	7	24	6	16	12	16	7
GGTCACATCTCCACCC	ref_2290_missing	1	2	1	2	1	1	4	2	3	1
ACCATTCTCGACACTT	ref_2290_missing	36	62	42	43	84	50	56	39	79	32
TGGTTTCCCGAAATAA	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
AGATTGACGGCGGACT	ref_2290_missing	9	8	13	8	4	12	13	12	9	6
TGCTCGGGCTTTTAGT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TCGAAGAGGTTGGCCT	ref_2290_missing	22	52	22	27	45	31	50	16	52	30
TTCAGTGCGTGTAAAC	ref_2290_missing	37	77	73	33	102	43	83	49	114	36
CCGAGCCTGCGCTATG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
ACCAACCTCACATGTA	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TTAGGCTGGTTCTCCC	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TTATCTTCCAACTTAC	ref_2290_missing	5	5	2	1	6	2	5	2	2	1
ATGGAACACCCATGGA	ref_2290_missing	16	26	23	20	40	24	46	18	32	13
ATACTTAACCGGGGCT	ref_2290_missing	37	89	47	30	71	41	66	21	87	36
AAGAGCTGCGTTCTCA	ref_2290_missing	12	9	7	2	11	9	15	12	16	6
ATCCTAATTGGTCCTG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
CCAATAAAGCGACTTG	ref_2290_missing	2	1	4	4	4	1	8	4	2	1
GCGATTGGCATCGCAT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
CATCTGAGCCACCCTA	ref_2290_missing	4	13	7	5	10	1	12	5	17	2
CTCCGATGCAGAGTTC	ref_2290_missing	16	33	22	26	35	28	45	13	58	21
CTAACGCACCATGGCG	ref_2290_missing	11	16	7	12	16	15	21	9	19	9
CTTCTGGATTACAGGG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TCTCCTCGTCTAATGC	ref_2290_missing	5	39	6	8	23	3	29	3	24	10
CCGTCAAGCATCTTTG	ref_2290_missing	2	2	2	0	5	0	2	2	1	0
GACGGTTCCGTGCGTG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
GTCACCTTTGCCTCTG	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
GAGAGTCTTCTCTAGT	ref_2290_missing	2	5	3	1	13	4	13	2	13	4
TTACTCGTTCAGTATG	ref_2290_missing	3	15	5	4	12	2	11	2	12	1
GAGGGGTTGGCTCATT	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
CTATATGTTACTAATA	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
TTCAGATGAGTATAGC	ref_2290_missing	8	22	10	9	23	6	23	15	21	19
CCCCCACCCTTATCCA	ref_2290_missing	4	3	4	1	12	3	11	3	11	3
AACGGTCCTCTAGAAC	ref_2290_missing	0	0	0	0	0	0	0	0	0	0
ATATGGGGTATGTACT	ref_2290_missing	16	22	23	14	25	9	25	25	51	15
CCACACATCCGTATGA	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TTAATGTGTTTACGGT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TACTCTGTTGCCTTCT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TCTTATCACATACTGC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GGTCTAACCAGGACAT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
CATGGTACATCGTTGG	alt_4136_missing	53	66	40	48	70	41	67	34	69	29
GATTTATTACCTCAAC	alt_4136_missing	16	38	24	27	43	20	41	19	45	18
TTGACTTGCGATCAGG	alt_4136_missing	13	42	39	10	34	26	49	28	65	20
TGTATTTGGACCGATA	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GACCGAGATGCTTCCT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
ATGCTGACGTGGGTGG	alt_4136_missing	180	237	225	181	250	168	276	154	309	154
TCTGTGTGCAGTGTGA	alt_4136_missing	44	79	58	72	101	43	122	50	108	41
GCAACTTACTGCAAAT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TATACTTATGTGCTGC	alt_4136_missing	2	8	6	4	3	2	12	5	8	4
ATGTACTTGAGTTATT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GTTAACAGTGGAGAGT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TATCACTTCCATCTAG	alt_4136_missing	9	34	31	18	36	20	38	14	30	11
CGTCCGGTCATTTTGG	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
CGGTTCCGGCTGTTTA	alt_4136_missing	10	18	6	2	17	3	15	3	12	3
GAATGCGACGAACGCT	alt_4136_missing	7	13	11	10	16	11	16	16	16	15
TGCTCTCGGTGACCTT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
CGAAGGAGATGCTAGG	alt_4136_missing	5	3	4	2	0	0	3	1	5	1
GCTAAACTGGGTCCTT	alt_4136_missing	4	13	16	7	9	8	12	5	19	5
TCGCTACTGCGGTCGT	alt_4136_missing	6	9	11	5	6	5	14	7	14	7
GTTTGCATGGACCAAC	alt_4136_missing	19	27	22	11	29	18	39	21	42	27
CTGCTATATCGACCTT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
CCACTTGTCGAATTAG	alt_4136_missing	16	42	9	7	50	5	31	6	38	9
CAATTGATGGTCGACC	alt_4136_missing	5	8	5	3	5	3	7	3	1	4
CCGTGTATACTGCATC	alt_4136_missing	10	19	8	4	17	9	28	10	18	12
TATTTAACCATCGAGG	alt_4136_missing	9	25	18	20	35	16	22	12	26	15
TCTCGGTGGGACGGTT	alt_4136_missing	5	5	9	8	2	5	9	7	6	5
GATCGGTGGCACGACC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
AGACGCCGGTGCTATA	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GTATAGGGGCTGACTA	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TGTGCATCGAGGAATT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TAATTATGTTTACACG	alt_4136_missing	8	9	3	5	7	4	6	7	5	3
GTCGCTGTGTGGTGCA	alt_4136_missing	34	90	50	45	97	53	94	44	91	41
GAAATCCGAAATTGCT	alt_4136_missing	10	13	8	4	13	5	20	9	9	7
ACGAGGGTGGATCCGT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
ACAGAGGGATTGTTAA	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
CATTGTCGCAGATACT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GCGAGCCGTATTCGCG	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
ACAAAAGATAAAAGTT	alt_4136_missing	13	9	8	9	13	13	10	5	14	8
ACCGTGAGAGTTCTCT	alt_4136_missing	0	4	11	7	3	3	6	8	5	7
GGGTTTTTGATCTGGA	alt_4136_missing	1	8	9	2	1	2	5	3	2	1
GCGACTCAGTCGCAGA	alt_4136_missing	20	20	9	24	35	14	41	10	36	18
TTATTACGACGTCGTC	alt_4136_missing	7	13	21	6	11	7	22	6	20	7
GTCACCGAATTGAAAT	alt_4136_missing	1	18	1	3	14	1	19	7	23	2
ATTGATACACTCGGTG	alt_4136_missing	13	16	14	14	19	5	18	5	14	4
GTGTACTTGTTGGTAT	alt_4136_missing	27	44	38	20	35	14	31	24	42	20
ATTATGACTGGGCGTA	alt_4136_missing	39	72	71	42	77	53	74	41	87	48
AAGTTACTTTTGTTAT	alt_4136_missing	9	10	9	5	13	10	12	7	10	10
CGTGTGATGATATCTG	alt_4136_missing	4	16	12	7	15	6	13	6	11	3
ATTTTATTTTTTGTCA	alt_4136_missing	1	2	3	1	1	4	2	1	2	1
TCACGCTTTTCATCGC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
CGGAGATGTTCCTTTC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGTTTTGAGGTA	alt_4136_missing	14	34	24	8	19	18	25	20	28	8
GGGCCGACAGGAATGA	alt_4136_missing	11	12	15	12	23	10	18	15	19	16
GGTTTGCGCCTTACAC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TTGAGCTAACTTTGAC	alt_4136_missing	25	32	24	18	35	26	35	19	39	17
CAGCGTTGACGGACTG	alt_4136_missing	33	54	35	41	54	24	54	22	60	30
ATGTTCCCAACTCATG	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
TGTCAAGTCTTAGGAT	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GTCCTCGCACCTGACC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
ATCCCGTCTGGCATGG	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GCTTCTATCGTGTTTC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGCGCAGACCGC	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
AAGACATTACTCACAC	alt_4136_missing	6	6	6	8	10	4	6	0	6	6
GTGTTCTGATTAGACG	alt_4136_missing	34	67	46	32	60	37	60	32	67	47
TGTTAGTCAGATTTCA	alt_4136_missing	0	0	0	0	0	0	0	0	0	0
GACAGTCTATCTGTCC	alt_4136_missing	0	1	2	1	2	1	1	0	1	0
TGTCGGGCGTATGCTT	alt_4136_missing	3	4	6	7	8	7	10	5	6	6
CTTTTCGTTGGCAGTC	ref_6115_new	14	18	30	19	27	18	27	12	18	21
TATCGTGTATCAATTA	ref_6115_new	52	49	48	59	64	38	61	50	74	46
AGGCCTCGGCCAATAC	alt_6115_new	61	52	60	67	65	58	69	58	64	47
CTCTGGTACGTCTCGG	ref_6115_new	0	0	0	0	0	0	0	0	0	0
GCAGACACAAGGTACC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTTTTTGTGGC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ACGCTTTTCTGCTTCG	ref_6115_new	58	60	75	56	65	53	86	51	82	57
TTGTCCTTGGCACGCT	ref_6115_new	29	35	32	25	35	35	32	26	41	25
AATTTCCGGTACGCGG	ref_6115_new	1	2	0	4	1	2	7	4	2	3
TTGGCTCCCTCGCGGT	ref_6115_new	25	41	21	26	32	29	29	29	35	22
GTCCCGTTCGATCTCT	ref_6115_new	154	157	214	172	189	145	204	159	214	153
GCCATCGGTTTGAGAA	ref_6115_new	93	160	127	119	151	144	131	108	171	110
AAATTGAACGGAATCG	ref_6115_new	33	17	35	34	33	37	19	30	42	18
TCAAGTTTGCATGTAA	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TTGTCGATCTTGTTTT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TTGAAATGTGGTATTA	ref_6115_new	12	14	20	16	19	12	18	16	13	19
ACCCTATGGATTAGCC	alt_6115_new	57	88	45	39	64	51	79	40	104	47
CCACACTAAGCTCCGC	ref_6115_new	107	105	105	100	86	95	101	86	100	80
AACAGCACTGTTTATT	ref_6115_new	29	58	33	26	66	24	66	29	47	26
TCACGATGCCCACAGG	ref_6115_new	0	0	0	0	0	0	0	0	0	0
AAGCGATTCATTGCCG	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTAGTTCGTCT	ref_6115_new	53	54	59	46	58	44	51	41	45	39
CGCCAGGATGTAGCTG	ref_6115_new	8	31	29	15	26	21	34	20	32	21
CAATGGTCTTTGTTCC	ref_6115_new	14	11	15	14	14	9	16	12	20	12
ATGACAGAAATTCCCG	ref_6115_new	41	40	52	43	27	40	54	26	57	27
TCTTCGCACACCTGTC	alt_6115_new	6	11	8	11	17	11	13	10	25	5
CGCCGGTATTGTAACA	ref_6115_new	16	10	16	18	13	14	17	9	14	6
TGAGTCTTATCGGAAG	ref_6115_new	5	11	4	4	8	7	7	2	2	3
TATGCAGTAAGGAGGG	ref_6115_new	59	57	68	54	53	55	65	46	69	49
ATATGTTGGGATTAGC	ref_6115_new	13	10	18	18	21	9	21	14	23	16
ACATAATTTTGCATAT	ref_6115_new	78	73	98	64	90	69	90	66	79	59
TCGGATTAAGGACCCA	ref_6115_new	20	18	13	28	24	18	19	12	14	12
TCTGACGCATGAAGTA	ref_6115_new	60	95	81	71	109	59	94	65	89	78
GTCCATCACCACTTTG	ref_6115_new	64	68	77	66	77	56	86	70	75	54
GGAAGAGTCCCGCCTA	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TCACGGAATGGGTCTC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ACGCGGTCTTAGTGGT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
CTTTAGTACTGGCGAT	ref_6115_new	20	22	24	25	26	28	23	18	32	12
CTGGTCTGTTTGGCCA	ref_6115_new	13	6	17	13	9	9	12	5	22	7
TCTCTGCGAACCTTAG	ref_6115_new	19	30	10	18	18	15	14	13	18	14
ACACGCGGAATTCCGA	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TTTCTATTCTATCCGG	ref_6115_new	73	56	94	77	90	62	70	68	80	61
AGCAGGTTGCAAACCG	ref_6115_new	29	23	32	28	30	20	23	19	21	28
TCTGTTCTGGGACCAA	ref_6115_new	24	28	20	26	23	26	25	19	24	19
GTCCTGTTTGTCGTAT	ref_6115_new	28	31	32	28	32	11	26	19	22	18
TGATTTACAAAGGGAT	ref_6115_new	7	9	10	5	8	8	6	4	7	7
CTTCGTACCGACCGCG	ref_6115_new	83	93	91	81	90	76	78	80	105	72
GTTGAATTTTACCTAG	ref_6115_new	78	67	69	52	75	57	77	54	62	59
TGTGGCGCAATAACTG	ref_6115_new	30	28	25	24	27	24	43	22	32	27
TGTGCCTAGTTATTCT	ref_6115_new	211	261	278	247	294	208	286	220	298	196
CCGTCGCGTTTACACT	ref_6115_new	2	3	0	0	1	1	0	1	1	0
GAGAGGTCCAATTCGA	ref_6115_new	64	68	71	61	79	49	67	55	99	61
CCTATTCTTTAAAATG	ref_6115_new	213	205	258	218	248	213	245	243	232	184
GGTTTTTATTGAATAT	ref_6115_new	8	9	9	6	10	5	6	4	10	5
GTTTCTATCCCGACCA	ref_6115_new	58	82	77	55	83	46	72	43	85	36
TGTGTGCCATGGTCTA	ref_6115_new	29	16	14	6	14	24	28	22	21	20
AGGCCACTATAAGGCG	ref_6115_new	0	1	1	0	4	0	2	2	4	0
CATCCGAATCGGGTGG	ref_6115_new	13	5	20	13	13	10	9	7	11	9
GTTCCATGAGAATACT	ref_6115_new	28	23	24	20	24	27	21	16	28	16
GCTCCAATGTTTCGGT	ref_6115_new	105	106	125	85	75	91	94	69	86	71
AGCTGATGGCAGGGGT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
CGTCGCATTTCCTGTG	ref_6115_new	57	60	66	66	63	45	65	53	65	41
ATGGAGCAAGGATAGG	ref_6115_new	24	36	32	34	37	30	45	16	25	24
CATGGCAGCTTATGAG	ref_6115_new	35	28	54	41	36	23	39	27	41	30
GAGCGGTCGTTAACAC	ref_6115_new	27	24	21	21	18	25	24	25	34	21
GCTTAACCACCTGCGA	ref_6115_new	1	3	2	1	2	0	6	1	6	1
TCACTCTATGCAGCAC	ref_6115_new	6	12	14	9	12	7	17	9	24	6
ATGCCCCCTTTGTTTA	ref_6115_new	12	21	12	4	23	11	17	13	17	15
AGATACGTACCCTATG	ref_6115_new	18	23	15	13	19	10	24	7	23	3
GCTTTCTGGTGAGTTG	ref_6115_new	33	39	57	41	39	36	45	31	36	29
GAAACGTTTCCTGAAT	ref_6115_new	9	16	10	13	14	15	14	13	18	10
CCCTGCATAGTGGCGT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
CCGGTTTTACGATCCT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ACTGCATATTGTTTAT	ref_6115_new	23	12	31	27	22	27	18	24	28	19
TCAGAAGTGCATTTGG	alt_6115_new	70	121	94	71	125	62	95	56	136	76
CGAGGTTAGTCCGAAA	ref_6115_new	35	23	37	29	32	39	37	15	46	25
ATCAGCACGCCGGGTC	ref_6115_new	24	27	47	36	33	24	46	22	29	28
TGAACCCTTACGATCC	alt_6115_new	195	239	222	155	213	198	233	152	269	150
ATATGTGCTACTGCTC	ref_6115_new	0	6	2	2	4	3	1	4	5	1
CGACACGCATCCGCCG	ref_6115_new	20	30	19	24	9	8	17	17	13	17
GATTCTAATGTACAAG	alt_6115_new	42	72	56	59	53	36	99	45	74	57
GTGGCGGGCTACCCAC	ref_6115_new	20	24	29	23	15	23	20	23	24	15
TCTCTCGGTTAGCATA	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TAATTGTCTTATCTCT	ref_6115_new	2	9	2	8	3	4	4	0	3	4
TTATCAGGTTACTCGA	ref_6115_new	11	15	13	11	18	13	26	10	22	10
ACTCTTTACAGTGTTG	ref_6115_new	2	5	2	5	3	3	1	2	6	4
CCTATCCCTGCGGCTT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
AACCCTCTTGCAAAAT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
CCCTTTATGTAGGATT	ref_6115_new	108	102	131	123	131	68	128	93	128	92
TGTACTCTGTTTGTTT	ref_6115_new	32	23	31	31	34	38	35	40	18	27
TGCCATTTTTTCCCGC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ATCGGTTATCGACAAC	ref_6115_new	11	9	23	18	19	14	27	20	24	18
TCTTGAGGTCTCAGTA	ref_6115_new	10	19	15	7	19	7	17	19	28	9
ATATCTTTTGCGTAGG	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ACTAGCACCCTGCTGG	ref_6115_new	27	29	34	24	35	24	30	26	38	18
CGGGCTTTTAAGGGGA	ref_6115_new	40	28	52	39	37	51	57	38	45	38
TGGGCTCGTCTCGGAC	ref_6115_new	3	6	5	2	2	2	4	6	3	1
TGGGCGTAAAATTAAT	ref_6115_new	72	76	107	79	92	82	103	81	100	81
AGTGGAAACGGTCAGT	ref_6115_new	149	153	160	128	145	149	166	111	170	111
AGAGCGAGTAGGGACG	ref_6115_new	0	0	0	0	0	0	0	0	0	0
GGGAATACGCGCGGCC	ref_6115_new	34	39	51	19	33	29	32	44	39	41
GAGCTTCTTCTACTCT	ref_6115_new	12	14	6	12	8	9	16	3	9	10
ATTTTGCGTGGTTCCA	ref_6115_new	3	10	7	4	5	4	2	4	4	9
CAAAATTGCCTTAAGC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TGGTATGGTCCGGTTC	ref_6115_new	39	35	58	41	29	51	35	42	51	27
AAGAGTTCTCAATAGC	alt_6115_new	0	3	2	3	5	3	4	2	5	0
TAATTTGTTGAAAACG	ref_6115_new	50	73	74	72	73	66	75	65	72	69
CTGCACTTTGTGTCAC	ref_6115_new	26	41	28	20	39	27	44	30	45	23
GCCCTAGCTGATGAGT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ATTTTCAGTACTAATG	ref_6115_new	10	9	8	12	8	10	9	16	17	12
GAGCATTTCCGAGGAG	ref_6115_new	27	24	27	35	34	29	30	25	36	16
AGTCGGTTGATTATCG	ref_6115_new	70	71	93	80	48	51	77	59	66	61
CTACCAATGCGCCTTT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
GCGCAATTTTTAGTCC	ref_6115_new	48	52	56	40	42	47	30	40	53	31
AGATTGGATTGGAGTA	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ATTGAGGCATCTGTGC	ref_6115_new	46	84	39	41	70	40	98	36	65	46
GAGATTATACTGCTAG	ref_6115_new	23	46	31	24	25	32	24	23	34	24
GTAGGCGCTAATGTAA	ref_6115_new	48	51	54	35	52	41	39	40	45	38
GTCAGTACACCGGATC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
ACCTGTCTATAGGTCA	ref_6115_new	35	38	48	46	58	28	63	30	46	48
TATTTTACCATGTCTG	ref_6115_new	0	0	0	0	0	0	0	0	0	0
AACTGCTTGTCAGCGC	ref_6115_new	25	28	35	31	38	37	28	32	35	30
ATAGATCTGGACCGAC	ref_6115_new	24	24	29	20	19	19	23	20	30	14
CTGGGGGTATAACTAC	ref_6115_new	10	8	22	13	17	12	10	16	11	12
CAGGTCCTTCTAGTTT	ref_6115_new	60	72	61	59	80	53	89	65	113	47
AGCCAACTCAAGGGCG	ref_6115_new	27	22	27	13	32	21	18	27	27	17
ACCCGCGATACTTAGA	alt_6115_new	6	9	6	5	10	4	6	8	9	12
CATGGTGTTGCTTACT	ref_6115_new	10	6	7	11	7	11	8	4	7	9
ATTGTCAGTTAAACCA	alt_6115_new	53	90	70	47	86	59	89	59	106	61
ATTGAAGTTCTAGGAC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TCGAGACTCGGCGTTC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TGTTTTACGCCCTCAC	ref_6115_new	10	12	12	4	4	5	12	3	8	9
TTTTCTTAGGTATCAG	ref_6115_new	40	39	38	37	38	37	39	35	50	37
CTGACCATACGTGATC	ref_6115_new	26	27	27	35	35	17	25	21	36	29
ATCCACACTTCTACTT	ref_6115_new	30	25	22	23	22	14	19	10	19	21
GAGCTCATGTATCCAG	ref_6115_new	9	13	18	8	6	9	11	11	9	8
ACACCGCTGCCAGTCG	ref_6115_new	0	0	0	0	0	0	0	0	0	0
CTTCTGCCCCCCTCAC	ref_6115_new	0	0	0	0	0	0	0	0	0	0
GTTCTGGCGGGTTCTT	ref_6115_new	10	5	7	15	12	7	9	10	9	11
ATGTCAGGTCAGAAGT	ref_6115_new	1	2	1	4	6	0	1	1	2	1
AGTTGCAAGATATCGT	ref_6115_new	0	0	0	0	0	0	0	0	0	0
TATTACGGACCCTTCC	ref_6115_new	89	85	75	94	109	63	70	81	91	54
TGTGTGATTACCTTGG	ref_6115_new	6	5	3	6	3	1	5	5	1	2
TGTTCCTACCAATTAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
ATTGTCATTTAGTTGT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GCTCCGATGATACCAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CAACATAGTCAGCTTT	ref_4649_RC	8	10	12	8	17	9	10	7	21	13
TGTGCAGTTTCCTTGC	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GATGTCCATTTCGGTG	ref_4649_RC	10	9	11	14	22	12	12	4	12	7
AACAAGACTAGAAATA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
ATGGTATATCATAGCT	ref_4649_RC	4	7	10	5	4	4	3	1	8	1
TTCGCCAACGGCGGCC	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
AGTCTCGGGGACTAAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CCTGTTTAATCACGGG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TTTCTTATACTTACCA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CGTGTGTATTTATGTA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GCCGCTAGAGATACTT	ref_4649_RC	10	27	16	22	35	15	36	20	49	11
GTAGCCATAGTAGGGG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TTGCAACGATTACTTC	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GATTGTTTCCACCACT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TTTTTCTATCATGCTG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TGGGCCCGTACTGAGG	ref_4649_RC	14	19	16	12	13	12	11	6	19	5
AATCGGTGGAAATCTA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GAATGAACATCGTCCT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GTTGTCATAATGTGGT	ref_4649_RC	0	5	3	2	4	2	2	5	4	2
ATATAGGACCAGTAGT	ref_4649_RC	44	51	54	34	51	35	49	27	57	30
ATCATCCGATTTCAAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
AAATACGTATGTTCGG	ref_4649_RC	15	20	21	5	15	17	25	5	24	13
TGTGTACCGCGCATTA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CTTGCCTCGAGAGGAG	ref_4649_RC	1	1	0	0	3	2	1	1	1	1
AGGTATTGGTTCCTTA	ref_4649_RC	0	4	5	3	5	3	6	3	5	3
ATCGTTACCTGTGTTG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CTGGTATTAGGCAACA	ref_4649_RC	13	20	17	10	15	15	18	18	25	16
ATCATCCGATTTCCAT	ref_4649_RC	16	19	27	13	35	19	30	15	27	15
TGCCACCCTGATGCAG	ref_4649_RC	31	32	28	20	26	35	30	25	34	25
AACTGGTCTTGTCGGG	ref_4649_RC	58	72	61	46	57	39	58	46	61	55
TGCGCGAGCATGTTAG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GGTGCCAATCTATGCA	ref_4649_RC	93	85	92	104	117	83	126	87	136	101
GCGTACCTTTCGCGCT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GCCGTCCCATGCATGT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TATGTGACGCAGCCGC	ref_4649_RC	9	11	13	5	2	3	11	11	8	5
GATTCAGCCATTTGAC	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
ACATTATGCTCAATGT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GCTTGGCTGCCTTAAT	ref_4649_RC	11	9	10	10	15	15	13	15	8	7
CTTAGTTTTTTCGCCT	ref_4649_RC	9	13	6	6	11	12	15	5	13	7
GATGGCCCGATTCTAT	ref_4649_RC	4	11	12	6	4	6	6	3	10	2
GGATAGGGAGTTCAAT	ref_4649_RC	8	13	11	8	15	7	9	8	5	5
TGTGCGACTAGCAAGT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTAGCCAGTCGC	ref_4649_RC	20	20	23	22	29	12	27	14	33	19
TAGAATTTTTCAGGCT	ref_4649_RC	19	15	16	24	19	12	20	19	15	16
GCTCAGACGTTTTGAA	ref_4649_RC	37	66	65	49	52	45	62	44	82	39
CAATGGACCACCTTCC	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CGGTTGCGAACATTGC	ref_4649_RC	2	10	3	3	8	5	4	2	6	4
AGTACGTGAGCATAAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CCCGTCGGAAACTGCC	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CTCGGCGAGCTAGACA	ref_4649_RC	2	13	5	8	12	9	14	10	15	11
AAGATTGTCTGGTCTC	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGCTCCTAGAAT	ref_4649_RC	6	9	6	3	5	7	20	4	13	7
GACTATGTCTAGAACA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GTATTGTCTGTTCCCG	ref_4649_RC	25	36	38	31	36	25	55	27	32	29
ATTGGGTCTAAAGACG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TCTTTAGTGATTATAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GCAAAGTGAGGCCGTT	ref_4649_RC	1	4	0	5	0	3	1	1	3	2
TCTACATACTCAATCG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TCTCCTTTTGAGTCTC	ref_4649_RC	19	19	7	12	12	14	14	8	13	13
TTGCTATAACTGACCC	ref_4649_RC	42	54	48	32	53	41	39	19	59	25
ATGCACTCTGTTCTCC	ref_4649_RC	16	10	17	21	24	25	22	22	19	5
GTTAGGTCCCGCACCG	ref_4649_RC	8	16	7	14	19	14	7	10	17	7
TATGACTAGGTTACGG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GATTTGAATCTGATAA	ref_4649_RC	7	3	8	5	8	1	4	8	9	5
TACTTCGCACGATACC	ref_4649_RC	18	16	24	17	21	29	19	14	19	11
AGCGTTCGCCATTATA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CCTTACACCTTGCTCA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TTCAGCCTGTCTACTT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TATGTAGCAGTAACTT	ref_4649_RC	7	15	8	7	6	6	6	13	11	7
GAACTTCGATCCGCAC	ref_4649_RC	4	1	1	0	0	3	2	3	2	1
ATCGTGGCAACGCTTT	ref_4649_RC	3	4	7	5	8	3	10	7	11	3
GGGCGGTAGACCTCCT	ref_4649_RC	5	4	1	3	3	5	2	5	5	4
CCCGCTGACGCCTCTT	ref_4649_RC	30	32	28	21	22	20	47	16	30	16
TTCTCCCTGCTTGGGT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TACATTTATACTTTCG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CCATTTTTCATCTTCA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
TCGCCCGTTTCTCACA	ref_4649_RC	18	39	25	24	21	31	36	17	30	29
TTTTGAGCCGCATATG	ref_4649_RC	1	5	1	2	1	2	3	1	1	2
TGCGGTTTGTTATGAT	ref_4649_RC	12	14	18	9	15	13	10	14	12	16
TTCGCTTTATCAGAAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CATAGTTGCTCAGACA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
AGCGGTAACCTAACTG	ref_4649_RC	25	39	39	26	36	37	40	30	43	22
TGTTCCCATTCAACTG	ref_4649_RC	0	1	0	2	0	1	2	1	0	0
TAACTTCCGAGTTTTG	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GGATGTTATTACCATG	ref_4649_RC	4	4	0	1	2	2	1	2	2	2
TTTGCGGCGTGTCAGT	ref_4649_RC	16	24	17	19	19	21	19	14	23	12
TGCATTCAAGCGCTTA	ref_4649_RC	22	22	23	33	33	25	32	24	34	24
CTATCAAGGTGCTTAT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
GATTAACTGATATGGA	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CTATATGCCGGGCCTT	ref_4649_RC	0	0	0	0	0	0	0	0	0	0
CCATTTAGGTATTAGA	ref_4649_RC	21	18	16	20	17	14	24	19	16	16
TCCCTTTCCATACGCT	alt_1252_reverse	24	14	24	18	12	19	18	21	18	18
TAGATCCGGCTTCGCG	alt_1252_reverse	27	23	35	26	29	25	19	26	28	20
CTTCATACCTATAATG	alt_1252_reverse	68	42	77	44	67	72	72	60	69	66
TTTTCTTTGTACGCCG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCACTCGGTTTAT	alt_1252_reverse	58	52	76	52	41	51	59	63	42	38
GTTGTTTTTCCTCTAA	alt_1252_reverse	19	13	20	12	16	15	19	24	18	23
ATCACCGGTGTTTGCC	alt_1252_reverse	23	36	31	19	23	12	43	18	27	24
TCAAGTCACTGGCGTA	alt_1252_reverse	75	71	94	83	71	60	60	67	54	88
CTATCGGATCTCACCG	alt_1252_reverse	4	10	7	6	6	7	14	4	3	5
TTTTAGGCACACTCAC	alt_1252_reverse	38	38	43	31	34	36	36	30	48	30
ATGTTAGAACGGAACC	alt_1252_reverse	47	53	54	50	56	59	71	50	63	43
CTCTCACCGTGGACTG	alt_1252_reverse	4	1	6	1	1	0	1	2	1	4
AATGCTTTGCACATGC	alt_1252_reverse	2	3	5	0	2	6	4	0	0	2
AGTCTATCCTCCGCTT	alt_1252_reverse	14	16	19	10	21	20	10	17	14	9
CATGGCCGTTAATCGG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GCCAGTCATGTGGAGC	alt_1252_reverse	7	10	11	7	6	7	5	9	2	5
CCTTTATCGTTGCCGA	alt_1252_reverse	16	6	11	9	13	11	10	9	7	9
GACTCTATTGTAAACT	alt_1252_reverse	14	13	7	5	10	12	8	7	11	8
GCCCTGCTTTCTCTTA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTCAACATAAGCGCTC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TCGATGCAACAGGTAC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGTACTCCTTTGA	alt_1252_reverse	4	6	3	1	5	5	15	4	11	6
AAGTCGGATATGGTAG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGGTTTAATCACA	alt_1252_reverse	64	56	76	85	41	62	40	56	62	57
CGTCTGGACAAAAATT	alt_1252_reverse	2	0	3	3	5	6	1	0	2	2
AATGTCACTCTCACAG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGGGAATTGTCTT	alt_1252_reverse	0	0	0	0	0	1	0	0	0	0
TCCTGGGGCCTTATCC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGGCTCCACCTT	alt_1252_reverse	27	32	51	47	36	27	34	39	37	31
GCAACGGAGCGAGTTT	alt_1252_reverse	10	10	9	8	11	10	7	11	3	8
AAATCATACCTGTTCA	alt_1252_reverse	11	10	17	5	6	5	10	9	10	5
ACACTACCACGGGTGC	alt_1252_reverse	49	55	51	40	52	33	58	46	58	31
AATCAAATGTCGTCCG	alt_1252_reverse	19	7	14	13	17	16	4	4	10	15
TTGTTGCATGCCCAGG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAACAATCAGACT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTTCAATTAAATTTCC	alt_1252_reverse	128	76	144	117	84	115	70	114	78	106
CCTCCCAGCTCGACTA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGCCGCTCGATTG	alt_1252_reverse	27	59	35	34	49	36	46	31	58	36
GTATCGCGCTTTAGCG	alt_1252_reverse	8	4	10	3	7	6	12	13	9	5
CGGGTCTTTACTCCCG	alt_1252_reverse	55	19	51	31	28	35	47	44	29	33
CTTAGTAACTTGAGGC	alt_1252_reverse	110	110	125	130	100	115	101	109	105	124
ACTTGCAGCACGATAC	alt_1252_reverse	100	108	165	135	107	143	110	121	116	139
GATGGTTAATTTTTTG	alt_1252_reverse	75	45	65	59	50	68	50	42	64	62
ATCGGGAGTTTGTTAA	alt_1252_reverse	32	30	59	33	35	33	34	28	32	37
CGTATTTTAACGATTG	alt_1252_reverse	25	15	26	24	26	13	15	27	23	27
TAATTCCGACCTGCAC	alt_1252_reverse	29	21	40	30	22	26	12	33	17	21
GCCGTTCATTGTTGAT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CATGCCTTCTACTGCT	alt_1252_reverse	27	37	69	40	27	44	41	34	36	35
CTACTTTCACCTAGTG	alt_1252_reverse	64	59	78	59	65	72	88	63	89	60
TGATTTGTTGATCCAG	alt_1252_reverse	149	107	174	153	117	131	125	127	132	138
TAAGCGACACCTGATT	alt_1252_reverse	86	82	118	86	55	79	68	58	92	79
GAGCAGTGCTCAATTT	alt_1252_reverse	36	31	49	42	38	45	28	50	58	41
TATGTCAATCTTCCTA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGGGGTTTAGTTT	alt_1252_reverse	12	15	18	15	18	13	7	13	13	18
AGTATCTTGTTGCAAA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GCGCACGAGGGGACCG	alt_1252_reverse	45	41	49	54	45	35	42	41	51	44
GTCTATTGTATGCGTT	alt_1252_reverse	2	2	1	0	1	2	3	1	2	1
TGGACTGCGTGCCTTT	alt_1252_reverse	1	3	4	5	0	6	2	3	4	1
TGCTTTCCGTAAAACC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTCTCGGTGCACA	alt_1252_reverse	7	12	5	10	9	4	14	4	14	2
ATAGAAAAGGCCTCCT	alt_1252_reverse	76	44	88	71	64	44	45	59	67	58
TATACGACCTTTGTCT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CATGCGTTCTTCAGCA	alt_1252_reverse	1	4	3	2	5	1	0	1	0	3
ACGTTGTTCGTCCTTA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCACTACGCTGTC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGCTGGGCAAACC	alt_1252_reverse	13	6	9	12	13	11	6	12	10	5
TCTATGCCTGCTTTTT	alt_1252_reverse	34	27	40	41	31	33	28	25	32	44
GCCCCGAACTAATCAT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGAGCGTTCGACG	alt_1252_reverse	33	46	38	21	43	33	34	36	42	28
GGTGGTCTTGGCTTCA	ref_1252_reverse	33	40	50	64	36	43	32	57	41	36
ACTTGATTTCTTCGTA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTTATACAATCCAATG	alt_1252_reverse	11	0	14	1	9	9	8	4	11	5
CGGTTGGATTACTGAG	alt_1252_reverse	29	27	40	28	30	22	18	17	25	16
ATTGCGGACGCACGTT	alt_1252_reverse	57	44	74	57	58	65	47	58	78	51
AGTGAATGTACAGGAG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTAGACCACATG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTTTAAGTATCT	alt_1252_reverse	59	47	70	50	39	49	61	48	48	54
GTTTCCAGGTTTAGCG	alt_1252_reverse	34	28	42	26	29	27	33	36	32	36
TATCACGCTCCGTCCT	alt_1252_reverse	54	56	77	67	60	69	68	66	50	49
TAGGCGCACGGCATCC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTTTCGTACCAGA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTTTGTTAGGTG	alt_1252_reverse	36	45	48	33	40	38	34	25	28	42
TTTGGGGATAAGCCAT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TACCTCACAGGGTTGG	alt_1252_reverse	11	12	32	22	29	14	18	23	25	23
TTAGAGTCAACCCGGC	alt_1252_reverse	5	0	1	4	4	1	4	3	1	6
TATCGCGCCCGTTATG	ref_1252_reverse	24	11	17	14	13	17	7	18	15	14
CCTGTTCGGGAGAAGG	alt_1252_reverse	50	49	67	58	51	46	61	43	65	46
AGAGCCCCATGTCGCC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
ATCTATGACATACAAA	alt_1252_reverse	63	35	87	76	60	63	57	63	68	69
GCACTTTCAGTTCACT	alt_1252_reverse	12	10	14	24	10	12	20	22	13	17
TATATGATCTCGGGTA	alt_1252_reverse	9	8	10	20	4	7	12	14	4	8
GTCCAGGCTGTGTGCT	alt_1252_reverse	78	66	82	63	77	51	51	55	66	56
AGTCGGGCCATTAACA	alt_1252_reverse	28	19	48	28	21	32	26	25	26	28
TGAGCGGCAAACTTTG	alt_1252_reverse	55	54	76	59	72	64	48	67	51	44
AAATTATTGTTGCATG	alt_1252_reverse	23	24	29	32	18	22	27	27	34	22
CCAGGTCCTAGTTTGT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTACTTAGAGTA	alt_1252_reverse	2	0	0	1	0	0	1	0	0	1
ACATCGTGGTACGCTC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
AAGAACATTGGTCCAT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
AGTATGCTATATTACC	alt_1252_reverse	35	31	42	36	27	28	25	38	26	19
GACTTACTCGGTGACT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGGCGCTCATTCC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGACTCTCGTATG	alt_1252_reverse	40	38	50	49	50	52	41	49	51	54
CCGAAATTATTGGCCC	alt_1252_reverse	18	26	47	34	45	23	33	25	26	26
TCGATCTTATGGGCAG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTTCCTCACCCAT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTAGGGACACAGC	alt_1252_reverse	5	3	5	1	0	5	3	1	0	1
TACCAGCCAAATGCAT	alt_1252_reverse	7	2	2	6	3	0	1	1	6	2
TAGTGCCAAGGGAAGT	alt_1252_reverse	36	27	50	31	23	34	27	31	43	34
TTGACAGGTCATAGTT	alt_1252_reverse	79	60	85	51	55	68	90	53	70	61
TGCTAGATTACATACC	alt_1252_reverse	8	5	14	12	10	11	9	5	13	10
GGTAACTAGGATCCTA	alt_1252_reverse	37	20	39	38	37	14	18	31	23	29
ACGCAATATTCTTCCT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GAAAAGCGGCTACTGT	alt_1252_reverse	26	51	58	44	40	34	47	49	51	60
TGTGGGGTGAAGTAGC	alt_1252_reverse	13	19	8	15	11	12	14	15	11	11
GAGCTCTCGTGGTCGA	alt_1252_reverse	30	10	33	22	23	29	27	26	18	33
CGATTGTTTAATTAGT	alt_1252_reverse	139	105	159	125	144	146	129	139	109	122
GTCGCTAAGACATTTC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCGCAAAAGATG	alt_1252_reverse	60	36	59	54	40	59	43	46	39	51
ACTGCGGTTTTACTGG	alt_1252_reverse	13	8	9	11	9	11	11	8	6	13
ACTCATGCGCAGCAAC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTAAGTGACGCTTAAG	alt_1252_reverse	39	32	42	28	34	33	33	29	28	29
TACTCGTATTAGGGTG	alt_1252_reverse	13	8	10	9	6	9	14	4	2	6
TAAAATTCTTCGAAGC	alt_1252_reverse	58	71	72	59	44	53	74	52	56	58
CTGTCTCCTCGGGTCG	alt_1252_reverse	11	12	18	16	22	33	17	15	23	13
TGAAACAGTTCATGAG	alt_1252_reverse	39	27	38	34	22	28	26	19	25	17
TCCTGGCAATCGTGCC	alt_1252_reverse	22	25	41	26	22	25	28	24	24	35
GATCCCTACAGCGGTT	alt_1252_reverse	91	66	94	85	62	80	68	84	76	80
CATCGGTACTCGTCAA	alt_1252_reverse	20	18	16	11	17	16	19	13	16	12
GAGATCGGTACCGACA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTATTGTTCCCCG	alt_1252_reverse	61	36	40	42	51	32	60	27	37	37
TGTTGCTAAGGACCAG	alt_1252_reverse	20	26	30	16	14	21	19	21	21	26
CCGGTGGTTCTTAGTT	alt_1252_reverse	101	116	122	90	127	99	123	102	124	80
TCGGTGCACCAGCCGG	alt_1252_reverse	31	16	30	22	25	22	25	19	25	14
CATCACGTTAGAGGAC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTCTTCTTTCCAT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TAATTGTCTCCCTTTG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TATCGCCCTAGCTGCA	alt_1252_reverse	39	40	50	53	30	46	42	41	42	44
GATCGATGCGTACAGC	alt_1252_reverse	114	105	151	120	99	96	113	71	106	110
GCATCTGGTAGCGCCA	alt_1252_reverse	50	34	65	55	38	34	37	46	25	36
GCGTGCCCATTTATTG	alt_1252_reverse	23	20	26	15	18	27	21	21	31	10
TAGTCCACTCCGCAAA	alt_1252_reverse	6	40	11	12	37	5	42	15	52	14
ATCATGGGGAGTAAAC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
ACTCACTCATCTGGTA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
CCTCACGCTTTTACCG	alt_1252_reverse	0	4	3	5	4	1	4	0	1	1
TGATACCCGGAGTTCC	alt_1252_reverse	12	10	20	17	6	6	10	5	9	10
GGAGTGGGCATTGCTG	alt_1252_reverse	60	33	70	43	40	55	61	56	35	54
ATTATGGCAACTATTT	alt_1252_reverse	3	18	2	1	12	3	7	3	6	8
TTTCTAAGCGCTCTCT	alt_1252_reverse	38	31	46	34	18	31	32	33	28	34
CATGAAGTATTTTTGT	alt_1252_reverse	0	0	0	0	0	0	0	2	0	1
AAGGTGAGTTGAGCTT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTTATGCCATAG	alt_1252_reverse	102	67	118	70	77	91	91	73	91	106
ACCGTACGATTCGATC	alt_1252_reverse	37	28	51	56	35	37	24	37	35	43
GGCCTCATTTTATCTG	alt_1252_reverse	86	75	94	84	88	105	85	93	90	80
CCGATTTCGGTGTAAG	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCAACGGAGAGGC	alt_1252_reverse	52	46	69	61	65	50	56	44	43	53
TTGCAAGTTATTGTTA	alt_1252_reverse	8	9	16	10	13	12	14	12	17	7
GTCATCGTCCTTTATA	alt_1252_reverse	206	285	202	186	258	187	247	142	282	177
GGGAAACTCCGATTTG	alt_1252_reverse	18	6	26	16	16	13	13	18	12	31
TTATTCGGAATGACGT	alt_1252_reverse	84	69	137	107	62	97	69	74	85	112
TTCCTGTGCCACCCTT	alt_1252_reverse	39	23	33	33	16	25	32	41	31	16
GCATTCCTCCGTATTC	alt_1252_reverse	38	33	53	32	27	36	27	37	29	26
GTCGTATCCGTTCATC	alt_1252_reverse	11	8	16	10	12	19	9	18	22	13
AACATTTCAGTCTCTT	alt_1252_reverse	54	40	55	56	55	47	38	43	43	43
ATTGAGCGGTCCCTAT	alt_1252_reverse	6	5	14	9	3	9	6	5	15	6
TTTTCTCTCTGGTCAC	alt_1252_reverse	11	15	10	6	15	16	7	18	15	24
ATATAATTCTGGTCCT	alt_1252_reverse	72	70	114	75	87	78	77	68	68	88
CAGTCTAGGACTTATT	alt_1252_reverse	12	6	13	13	15	10	5	6	18	9
TAGCATAATGAGGTAT	alt_1252_reverse	25	22	37	31	15	27	16	14	22	30
GTTACCATGATGAACC	alt_1252_reverse	103	65	105	100	78	93	82	102	89	87
GTTTATGCCGACAACC	alt_1252_reverse	44	35	58	50	35	42	29	34	26	40
ATCTGAACTTTCGGAG	alt_1252_reverse	55	55	62	54	55	52	40	34	56	46
TGGCTGCCTCACCAGT	alt_1252_reverse	70	71	70	74	49	67	59	75	57	59
ACCTAACAGCGCAGGT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
AATCATCCGAGTTTTT	alt_1252_reverse	16	13	15	12	8	12	8	16	11	7
AAATATGCGTTTCCGC	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GACGTTTGCTTCATCT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTTTTGGGCGCGA	alt_1252_reverse	27	26	33	23	25	20	16	24	32	24
TCGTTGGATGGGTCTG	alt_1252_reverse	40	38	50	41	35	37	40	37	47	37
TTTTGCCAACCTCCCT	alt_1252_reverse	32	17	32	29	21	32	28	32	44	23
ATACTCTTAGTAGGAA	alt_1252_reverse	128	139	204	164	130	167	148	174	137	136
ACGGATGTGCCGTGTA	alt_1252_reverse	14	11	16	10	9	17	9	16	9	9
TTCTACGTCAACAGTT	alt_1252_reverse	30	13	35	17	19	22	28	22	23	21
AAGACGGGTATGCCTG	alt_1252_reverse	33	31	44	33	40	27	34	35	47	27
GTTGTAATCTAACAGT	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGGGGAATTTGGA	alt_1252_reverse	121	79	157	101	71	86	91	77	98	105
AGTAGAAGTTCTGCTA	alt_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTAACTAAATGTGTCG	alt_1252_reverse	76	70	89	100	61	66	81	82	69	71
AACATCTCCGGCGGTT	alt_1252_reverse	64	49	76	62	37	55	37	65	61	43
CCGCTTTTGCCTTGTC	alt_1252_reverse	24	21	33	24	24	29	22	26	17	19
TGTCGCCCTCGTAATC	alt_1252_reverse	72	44	88	59	73	76	55	59	65	74
CCTCGCAAAAGCCACC	alt_1252_reverse	19	7	15	17	10	14	13	17	6	19
GGTAATTCGGACTCGG	alt_1252_reverse	2	2	6	1	1	2	1	4	2	0
ACACGAATCGTAAATG	alt_1252_reverse	45	28	54	37	35	32	26	35	34	31
ATAGTTCTGGTACTAA	alt_1252_reverse	52	36	55	39	49	50	39	45	50	42
TATGTCTTTATTTGCA	ref_940_reverse	101	57	138	109	48	109	54	92	57	101
TGCACTAACCGTAAGA	ref_940_reverse	190	85	238	209	79	192	70	200	86	185
GGATGCCTATTCAGGA	ref_940_reverse	67	41	98	86	28	75	36	69	41	74
TCATCCCTTTAACGGT	ref_940_reverse	141	68	190	162	61	143	62	135	58	128
CTGCCTCGGAGTTAGA	ref_940_reverse	207	81	263	230	78	237	98	227	104	187
CCAACGACACCCATAT	ref_940_reverse	63	33	82	76	45	68	25	81	40	59
CTTACGATCTCGTGGC	ref_940_reverse	256	82	322	280	94	261	102	236	94	203
TGGGTTAAAGTCAGAC	ref_940_reverse	70	45	89	98	45	70	40	79	25	75
TAGCTTTTATGCGGCG	ref_940_reverse	94	28	139	94	24	91	32	86	31	90
ACACCGTGCGCCTTTG	ref_940_reverse	563	295	692	630	288	552	326	558	289	487
TTCCAGCTTCCAAAGG	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CATCCGTGTGTTAGTT	ref_940_reverse	90	38	100	105	42	104	35	92	48	86
TAGATAAATATTTCGG	alt_940_reverse	53	18	70	67	16	40	33	52	20	57
CCCCGTCAGCTTGCAC	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
TTGTATGTCAACCGTA	ref_940_reverse	64	63	75	70	70	54	70	49	72	48
TACATTCTTGTGGGTA	ref_940_reverse	108	38	133	110	30	124	37	116	36	92
TAACCGGGCCTTCGCT	ref_940_reverse	49	12	46	32	16	39	18	44	16	43
TCAGCCTTTACTTTGG	ref_940_reverse	151	76	221	210	107	173	97	156	102	134
ACAACCCTTATATTGG	ref_940_reverse	373	137	436	391	152	321	147	321	179	336
GTATTGAGAACTTCTG	ref_940_reverse	47	26	51	43	7	36	18	38	14	40
TCAACCTCTATCAAAT	ref_940_reverse	115	56	117	125	63	103	65	125	62	98
CCCCGTAAATCTGCTC	ref_940_reverse	21	7	25	23	11	20	11	21	6	31
ACTGTCAGTCTCTTGA	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGTCTCCATATCC	ref_940_reverse	41	16	54	37	24	35	25	48	15	40
ACAGCAAGGTTAGGTG	alt_940_reverse	6	5	4	3	1	9	6	2	1	2
GAGGCTGTCACATTCT	ref_940_reverse	130	36	198	156	47	105	70	163	41	109
CAGTCATGGTGGCTAT	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
TCTACTACGCGAATTC	ref_940_reverse	54	13	51	56	20	47	23	35	17	40
GAGATCATCACACACT	ref_940_reverse	125	48	126	162	57	127	48	134	62	102
ACGAGCCCCTGCTCCG	ref_940_reverse	26	11	34	39	10	35	15	26	16	37
GTGAGGTTGTGGTATA	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGCCTGTAGAGAT	alt_940_reverse	8	6	19	16	7	15	10	16	12	11
ATTGGAGTTCCTGTCC	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGTGGTGGCCTCT	ref_940_reverse	229	83	273	279	95	256	98	224	108	213
ACGATTCCGGACAGTA	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
GCAGATCTGGGGTTTG	ref_940_reverse	134	70	177	148	78	115	63	140	61	120
CATTATTTTGATTCAC	ref_940_reverse	82	27	70	60	21	40	16	60	25	50
GAGTTTAGCATTGCTC	ref_940_reverse	105	31	114	126	35	113	39	99	36	76
TCCAAGATGGGTGAGG	ref_940_reverse	8	10	7	7	6	4	5	6	9	12
ACATGGCTAAAGTCAA	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTGGATGAAGCA	ref_940_reverse	367	128	440	370	159	382	150	392	134	339
CTTCTCGACTACAAGG	ref_940_reverse	198	100	295	234	133	230	89	239	107	223
TCTGTCCCGATCTGAA	ref_940_reverse	128	46	201	149	41	149	45	141	41	123
ATTGCGTTCTTTTACC	ref_940_reverse	310	122	374	369	144	336	115	300	158	268
CATCCGTCTTCCCGCG	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CGAACCGTCAATCTTG	ref_940_reverse	686	276	890	790	294	684	288	648	294	610
TTAGCCGGATGTCCGT	ref_940_reverse	144	62	175	152	64	106	65	162	64	102
AACACGCAAGCGCATA	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCGTTGCCGGCAG	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
GCCGATATCCTTATTA	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CCCAATCTATAAGGTT	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
TCCATTCCAGCTGTTG	ref_940_reverse	36	22	49	48	26	51	20	49	21	41
TTACCCTCGATCAGCC	alt_940_reverse	857	345	1140	1019	332	859	336	916	421	801
CCATTACGTAATGACC	ref_940_reverse	75	27	73	77	41	89	37	70	36	53
GCTTAAAAAAAGGCCG	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTGTAGGGTCCTG	ref_940_reverse	28	14	41	30	8	22	16	26	9	25
CGAGTATAGGAGGTGT	ref_940_reverse	82	26	126	112	42	93	36	98	26	89
AGTTGTTTATTTATCA	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCTAAATATAAAT	ref_940_reverse	39	24	73	46	11	35	16	32	14	41
ATGTGGTTGAGCTGGC	ref_940_reverse	726	512	822	712	448	650	489	566	529	588
ACGTCACATGTAAGTG	ref_940_reverse	103	48	102	103	52	99	45	90	28	83
CCGTTTATTGATCCTT	ref_940_reverse	101	24	123	103	35	90	36	106	28	88
CGGTCAGGGATTTGTA	ref_940_reverse	1	2	4	3	0	0	1	6	0	2
CCTGCATGCTCCAAGC	ref_940_reverse	195	91	240	226	70	180	75	217	99	191
ATATACACGGTTTCAT	ref_940_reverse	32	8	16	22	12	21	13	32	10	23
CCCGCTTCTATCGGTG	ref_940_reverse	48	55	42	46	51	33	45	42	57	40
CCCTTAGAGAAAATAG	ref_940_reverse	87	45	123	144	45	77	42	105	30	70
CGACTCCAGTATATTG	ref_940_reverse	63	36	76	74	43	57	36	55	41	50
CTGCTCGTTGAAGCCG	ref_940_reverse	71	45	90	78	38	73	56	76	42	73
TGTAGCGTCCCACGGA	ref_940_reverse	117	33	140	118	45	129	53	124	49	120
GCGACTTCCTTAAGGG	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
TTGGAATGCCCAGGCT	ref_940_reverse	196	68	244	245	107	182	73	199	54	190
AACCGGTATTTGCCCC	ref_940_reverse	106	71	150	140	88	123	80	136	98	112
ATGCATCCATACGTTT	ref_940_reverse	28	7	43	30	16	34	12	23	12	23
GGATTCTCTCTTGGTC	ref_940_reverse	58	33	62	59	27	52	21	48	25	50
CTCTCTCTTCCACTGT	ref_940_reverse	42	15	39	47	24	43	9	40	10	41
ATCCATAGCATAACCT	ref_940_reverse	317	100	405	339	118	304	137	306	136	273
AAAGTGTGTACATAAT	ref_940_reverse	92	45	119	99	28	86	44	113	45	73
TGAGTTTAAGCTTGGG	ref_940_reverse	33	15	27	30	11	25	15	30	11	21
TTTTTGAGGCTTTAAA	ref_940_reverse	27	11	44	27	17	37	16	31	10	19
CCCCCCGTTGCCGGCA	ref_940_reverse	92	82	144	115	74	96	74	109	52	80
GGGTTTTGTCAACCCA	ref_940_reverse	121	58	117	144	54	131	59	115	55	113
GCGCCGGGTAAGATAT	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CATGCTCAACTGTTAT	ref_940_reverse	66	29	79	72	34	51	30	53	31	72
TATAAGGCAGTCAACA	ref_940_reverse	1	0	1	1	0	0	1	1	0	0
TGTAACATACTCGTGG	ref_940_reverse	105	48	164	142	48	138	72	91	72	100
AGTGATTGTGGTGGTT	ref_940_reverse	21	6	31	19	6	18	5	9	10	17
CTGTTTATCAGGCCAA	ref_940_reverse	86	26	111	96	38	72	34	93	35	84
GCTTTATAGTGCTGGG	ref_940_reverse	41	16	31	38	21	40	13	29	21	28
TTCATGTACTGACTTC	ref_940_reverse	62	26	79	92	32	89	40	72	37	72
CGATTTCTAGTTCCGT	ref_940_reverse	21	6	17	17	7	24	5	23	6	19
TGGGAGCCACCTTGCG	ref_940_reverse	73	38	66	91	36	75	35	62	51	63
GTTAAATTGTACTATT	ref_940_reverse	84	36	98	82	19	84	42	96	33	103
GGTTCGATTCAGGTCC	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAGGGCTTTGGTG	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGTAGCTCGTCCC	ref_940_reverse	51	25	55	40	16	43	20	46	26	39
CGGATTATCTGAATTT	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
TTATGTTCTCAAAAAT	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CAGAATTCGTTGGGAG	ref_940_reverse	24	3	25	25	12	20	8	20	15	17
GATCTCTGGCAATAGC	alt_940_reverse	22	3	27	32	9	19	14	20	4	11
AATCGTGCTATCGGCT	ref_940_reverse	66	24	70	55	16	52	27	43	15	53
ACCCATACATTGTTTC	ref_940_reverse	84	38	96	82	33	62	32	82	24	77
ATTATTTGGTCACTGA	alt_940_reverse	60	21	109	82	23	75	23	64	33	69
CAGTCTAGCTCGAATC	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CATGTCAATAACCGCT	ref_940_reverse	179	71	217	201	72	180	71	178	84	166
GTAGGCATGTATTAAG	ref_940_reverse	13	6	13	13	4	16	6	9	3	11
TCTGCGTACGTATAAT	ref_940_reverse	137	60	130	111	50	88	53	97	52	102
TCACTTCTTTACTCTT	ref_940_reverse	87	21	107	80	19	61	33	78	31	65
GCTGGGTACCTTACTC	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
CGAAGTGGTTTAATGA	ref_940_reverse	49	29	53	63	22	38	23	43	28	57
TTGAATGTGTCCAACC	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTTATCCGACGAC	ref_940_reverse	533	219	641	592	212	520	185	494	236	532
AGGTATCTTACTCAGC	ref_940_reverse	0	0	0	0	0	0	0	0	0	0
TAACTATCAGGTCGGT	alt_5741_new	4	8	6	6	4	3	6	4	8	2
AGTCCTGCTCACTCTT	alt_5741_new	12	21	15	9	10	16	10	15	21	12
CTACAATCTAGCGACT	alt_5741_new	17	29	20	20	35	27	31	22	38	20
CACGGACCGTGCTGGA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
ACTCACTATGTTTGAC	alt_5741_new	22	41	51	20	28	24	36	17	45	23
GGCCATACAACTCAAA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CCGCGAAACACGTCTG	alt_5741_new	42	53	39	57	62	40	70	56	99	60
GGCCACAAGTTACACG	alt_5741_new	4	3	4	4	6	1	4	2	6	0
CTAGGGTGGTTTTGTT	alt_5741_new	13	22	19	26	32	26	24	16	31	17
AATTGTTTTTGTTCTA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
ATAGTTGGCACGGACA	alt_5741_new	26	26	17	17	35	16	28	23	15	12
GGCTTTCCGATTTGTT	alt_5741_new	137	157	152	124	162	130	156	136	151	106
GCGTACTTTCGTATAT	alt_5741_new	4	11	4	5	4	6	6	4	7	2
TTGTATTACACCCTAG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TTTTATGTAATTTTGA	alt_5741_new	6	12	6	4	6	6	14	8	8	2
CACCTTATTCTTACCG	alt_5741_new	10	20	13	9	23	9	39	6	32	8
GGGGGTGATCCCTAAT	alt_5741_new	20	17	27	23	35	16	37	19	26	14
ATGACCCGCCAGGCAG	alt_5741_new	12	12	8	9	13	7	18	12	9	8
GGGTCGAGTACATATA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GGCACCCAGTCGCGAC	alt_5741_new	8	1	5	6	8	2	5	7	6	5
GATTGCGACCGCATTA	alt_5741_new	5	7	4	4	12	4	6	7	2	7
TTGCTTCAACAATCTT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CATATTACCATGATCC	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CGGCCCGTTTTCGATG	alt_5741_new	31	66	63	58	98	42	89	54	71	42
TGCTAATGCGAAGCGT	alt_5741_new	19	10	11	15	16	17	16	9	12	11
ATGGTTTCCGAATTTC	alt_5741_new	10	11	10	10	15	9	11	14	34	6
ACGCACATGTTGGGAT	alt_5741_new	36	34	37	34	46	26	47	23	46	27
GAAGGTTGTGACATTG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
AGGAGAGAGGCACGCT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GGTCTCCAACCGGCCC	alt_5741_new	21	35	29	20	46	19	24	17	37	22
GTTCGTTACCTTTGTA	alt_5741_new	15	16	12	14	15	6	15	8	29	5
CGTACGGTTCGATCTG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TGCATCTTGGTGATTG	alt_5741_new	7	8	11	16	12	8	23	9	27	5
ACCCCTAGCAATGTGG	alt_5741_new	4	5	3	1	6	5	6	2	3	1
CTACCCGGGCCAAGCG	alt_5741_new	52	82	73	47	61	40	85	37	63	41
AGTATCATTCGGTTTT	alt_5741_new	23	19	7	13	20	19	24	16	19	8
AAGTCTTTACAAAACG	alt_5741_new	1	1	2	2	2	0	3	1	0	0
CCATATTTGACGCCAA	alt_5741_new	52	89	51	44	84	49	93	42	71	60
CTCCTAGAAACCTCCC	alt_5741_new	2	5	0	2	5	0	4	3	3	3
ATGGAACTGAGGATTT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GGCATCTTTTATGAAA	alt_5741_new	38	43	46	37	49	39	49	23	69	22
ATCTATGTTGGTCCTC	alt_5741_new	3	2	0	0	2	0	2	1	1	0
CATACCAGGCATATGA	alt_5741_new	37	53	38	37	60	22	48	35	58	26
ATATGTATCATAATGG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GAGCTTATGGATCTAT	alt_5741_new	21	29	28	15	47	16	26	16	41	24
TCTCTTGGCGCTTCCA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CATTGTGGGCCAGAGG	alt_5741_new	5	4	7	7	8	9	13	7	8	3
CCGGTTGTCGGCTGGT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TCTTTCTATAGCGAAA	alt_5741_new	76	112	96	90	131	71	129	52	143	68
TGGGGCTATACATCTT	alt_5741_new	24	42	42	23	31	17	26	26	37	27
TTACCAAAATCAGGCT	alt_5741_new	68	96	53	39	85	52	97	44	98	48
TTAAGATGGCAACGCT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CTGTTGTACTGGACTC	alt_5741_new	3	1	1	0	5	1	3	3	3	3
GGTGACTGCTGTCATG	alt_5741_new	16	37	19	26	28	22	36	9	27	16
ATCTGTTCCCGTTGGA	alt_5741_new	16	20	26	17	25	9	19	19	25	18
GCCGTAACTTCGACGC	alt_5741_new	14	12	12	20	19	20	16	12	15	10
AACGGTTCTTTAGAAC	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GATTGTATTCCATTAT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CCCCCTATACTCGTAT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
ACATTTTCTCTCGTGG	alt_5741_new	17	31	27	13	38	19	31	15	40	27
CCGTTGCGTATAGACA	alt_5741_new	3	13	4	12	14	5	11	6	13	8
GGAACTTCTCCGTTCT	alt_5741_new	30	39	44	37	47	15	40	23	39	20
TTACGGGCTCCTTCGA	alt_5741_new	24	35	35	30	45	34	54	29	49	26
CGGTTCGTGTGCTGAG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TAGTAGTCACACGTCC	alt_5741_new	30	46	31	37	31	21	37	9	42	23
TCGGTTTGGGAATTTT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GCCAGAACGTCTATTA	alt_5741_new	2	3	3	4	3	3	3	3	1	0
CGGTTCGTGTGCCGAG	alt_5741_new	72	83	48	61	83	43	107	32	94	50
GAAATCACCCATTTAC	alt_5741_new	14	27	17	19	25	11	31	16	21	9
TACGTAGGTCTCATTA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TGGCCCAGACACGAAC	alt_5741_new	155	210	196	190	244	126	208	148	201	143
CATGTAACAGGTCCTG	alt_5741_new	2	6	6	2	6	4	9	4	2	5
ACAGTTAGAGATTCTT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
ACCGCGACCTTTCCAG	alt_5741_new	7	6	1	7	6	2	9	0	4	1
GATTGTACACCTCGTG	alt_5741_new	28	64	41	36	67	38	86	25	61	32
TAGGTTGTCGGTATAT	alt_5741_new	13	30	17	12	27	16	25	14	22	15
AGGTTCCGGTCCATCT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TGCATTCTCCTGCGTT	alt_5741_new	32	48	32	39	46	28	64	35	55	31
CCCGGTGAATATAAGG	alt_5741_new	22	24	17	10	36	16	26	14	23	17
GTTCCTCCGAAGTTAC	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CTGTTATTGTTCCACG	alt_5741_new	22	26	18	25	28	22	38	21	25	19
AACTGTATTCCTTATT	alt_5741_new	8	17	10	9	18	12	16	3	15	10
GCAGAAACCATGACTT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GGGGATGGTTTGTTAC	alt_5741_new	17	40	30	23	31	25	26	23	35	13
TCTAATTTTTCGCTTT	alt_5741_new	81	142	100	74	110	95	142	85	145	97
CGAGGCTGCTGGTTAG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
AAGAGACTATCTTGTT	alt_5741_new	13	13	9	10	23	10	16	3	10	9
AATTGGTTATCATAAT	alt_5741_new	12	15	8	12	12	10	21	10	16	12
TTTATGTCATTTTAAC	alt_5741_new	34	69	43	30	46	37	57	28	57	33
TTTTCATTTGTCTGTC	alt_5741_new	33	66	47	38	70	46	74	41	57	46
AGCGGTGAGTGTCGGT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GCGTATCATACCTGGC	alt_5741_new	10	14	3	7	12	3	6	1	10	2
CCTAAATTTTCACTTC	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CTGCCGCATAGAGGTT	alt_5741_new	30	35	19	19	37	18	38	20	45	30
AGCCTCTGCAGTGCGC	alt_5741_new	5	16	7	10	11	3	11	9	12	8
CAGGACAAGATGTAAA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GTCTTCAGGCCTCCAT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
ATGATAAGGACGTTTC	alt_5741_new	5	9	16	11	6	8	13	6	14	3
CCTAATTAAGGTGGCG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CACGGGGCCACGAGCT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
ACATTAAACGGTTCGG	alt_5741_new	9	31	16	22	18	19	31	16	24	8
TTTGGTGTTCCCACGG	alt_5741_new	21	23	25	11	16	13	22	17	26	13
GTTTCCGCATTTTCCA	alt_5741_new	5	5	2	3	5	2	1	3	7	5
TCTAAGCCGTCTCAGC	alt_5741_new	62	95	71	68	98	62	112	50	104	47
ACGGGTTGTTGTGTAT	ref_5741_new	55	88	74	69	81	76	99	53	103	40
GTTTTTAGCTCTAGAA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TTATGCCCAATCTACA	alt_5741_new	10	16	8	23	22	11	24	11	18	6
TCGAACTCACACTCTT	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TGGAAGCTAAGGGCTA	alt_5741_new	3	4	6	4	7	5	9	3	6	3
ATCTGCCACTTCTACG	alt_5741_new	25	53	27	17	43	22	52	17	58	23
GTCCAGGATTACTTGC	alt_5741_new	0	0	0	0	0	0	0	0	0	0
TGTACTGTCAAGGTTC	alt_5741_new	17	38	20	15	43	17	26	16	32	26
ACTGACCCTTTTACCG	alt_5741_new	51	102	76	61	114	45	117	63	113	61
CTTACATACTTCGTGT	alt_5741_new	15	60	23	13	38	15	41	13	53	18
TTGCATCTTTATCCCC	alt_5741_new	26	30	30	25	35	28	29	20	32	26
TAGTAATGGCGTGGGG	alt_5741_new	2	3	4	1	4	3	3	3	2	5
CAATTAGAACCTCGGG	alt_5741_new	3	8	8	6	4	2	7	8	6	0
TTTATCCCGGCGGAAT	alt_5741_new	53	51	51	48	61	35	61	43	64	43
TCGGGCTGACCAGCCT	alt_5741_new	1	1	6	1	5	4	11	6	13	2
TGGTGTGATATGCGCC	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GGGCTGTAACCGCCAG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
AACTCATTAGTAGGAG	alt_5741_new	13	30	20	8	18	13	19	8	29	18
CCGTGGAGTGAACAGG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GGGACAAAGATAAATT	alt_5741_new	1	13	5	2	10	5	9	7	12	5
AATGTTCGTTTCGATG	alt_5741_new	0	8	4	5	3	2	4	2	1	1
TAGATGCATCTACGTA	alt_5741_new	3	5	8	3	10	8	7	3	14	9
ATTCGTACTTTAATGC	alt_5741_new	0	2	3	0	2	1	1	2	2	0
CGCTGAGGGTCTTCGC	alt_5741_new	1	1	7	2	4	3	0	6	3	4
CCTCCATTGATCCTTG	alt_5741_new	0	0	0	0	0	0	0	0	0	0
CACCGTCCGTAAATTC	alt_5741_new	6	9	5	8	5	6	7	7	13	0
TTTCTTTAATTCGAAA	alt_5741_new	0	0	0	0	0	0	0	0	0	0
GCGCGCTGTTCAAAAT	alt_5741_new	47	63	53	31	52	44	68	48	52	53
CCCTTATTTGATTCGG	alt_5741_new	3	12	19	11	10	7	11	12	18	11
TGGATTCATTCATTAG	alt_5741_new	2	6	8	2	3	3	7	4	5	3
TCCTCAGTCCCTCTAC	alt_5741_new	0	9	3	4	4	4	8	5	6	3
TTGTTGGGCTTCTATT	alt_5741_new	16	28	24	12	18	21	25	9	34	13
AATGATTAATCCTTTA	alt_5741_new	20	29	23	28	35	27	38	25	39	21
CTGATGCTTCATTTTC	alt_5741_new	0	0	0	0	0	0	0	0	0	0
AGTTGAATTGGCGTTA	alt_5741_new	14	27	21	16	41	16	31	15	29	24
CGGTCCAATAGGATAG	alt_5741_new	4	12	15	11	13	11	24	8	9	8
CCTGTTGGTTTTCGTC	alt_5741_new	3	15	7	6	9	2	12	2	10	7
TGCGATTAACATTCTA	alt_5741_new	3	5	9	8	19	12	13	6	10	4
TCAATCAGTGTTTGCA	alt_5741_new	0	2	4	1	4	2	6	1	2	1
TACACGACGGACAGGC	ref_3975_RC	326	80	413	319	77	285	59	276	97	305
GCTGCATCAGGCCCAT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TCGGTGAAGAACGTGT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
AGTCCGTTCGGGTTTT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TTTCATGTGGAGGCTG	ref_3975_RC	174	38	246	216	36	205	43	173	36	152
AGGGATTCCTTGGGTG	ref_3975_RC	186	39	205	183	37	142	45	173	44	157
CCACACTCGTTGAAAG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TGTTCCTTTGGAGAGA	ref_3975_RC	275	76	362	364	80	301	89	286	81	261
GTTCGCACGTCAAATT	ref_3975_RC	168	47	203	175	37	158	67	148	53	177
ACGGTATGGATTTTTT	ref_3975_RC	12	8	10	14	3	8	3	14	6	15
TTGAGTTCCCTGATTC	ref_3975_RC	80	14	54	74	10	55	14	69	21	59
ATTGGATTTCCCGCTT	ref_3975_RC	48	15	49	41	11	38	9	36	7	39
CCGCTCCATCGCACCT	ref_3975_RC	118	36	155	139	38	130	28	121	47	96
GCCACCCTTCAGGTGC	ref_3975_RC	20	13	28	28	18	22	10	27	8	23
CCCGCTACGGTGTTTA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TCTGCTGCACTTCGCT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTGGCTTTGACC	ref_3975_RC	3	3	4	10	0	3	0	1	1	4
AGCTAAGCTTTGCTAG	ref_3975_RC	71	30	108	104	22	99	27	88	26	67
ATTTAGTATGCAGTCT	ref_3975_RC	105	19	99	100	22	79	18	75	30	65
CTGCTCGGCCGCCCAA	ref_3975_RC	33	8	54	38	6	31	11	43	11	32
TCTCGTTAAGCTTGGA	ref_3975_RC	155	32	207	168	32	136	29	137	43	118
CCTTTGACCCAAGCTC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CGAGTTTTTTTCTTAT	ref_3975_RC	98	21	135	102	31	81	20	95	23	89
TGTATTGAATTGCCGA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GCCTCTTTGTTTGTCC	ref_3975_RC	26	9	46	27	8	24	12	25	9	33
TGCCATTTATGTTATT	ref_3975_RC	342	101	416	381	71	334	109	382	87	241
GGCGAGACTACCCTTA	ref_3975_RC	146	35	208	225	40	138	30	141	46	159
TCTTCTTGAGTTGATT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTTCGGGTCTTTTACG	ref_3975_RC	789	209	998	909	196	774	212	750	198	655
TGTATATGCTAAGCAG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GTAAGCTCGGTTTCGT	ref_3975_RC	106	15	104	86	23	77	7	66	14	55
GTCTTTAGTGCGCGGT	ref_3975_RC	11	3	18	19	4	17	7	16	7	14
GTTTTCCCCGCACCGG	ref_3975_RC	152	46	192	184	38	153	35	172	42	155
ACTGAGTGAACGCATA	ref_3975_RC	173	49	241	189	37	201	53	174	52	151
GCTTCACGAGTTAGAA	ref_3975_RC	64	13	87	71	24	49	18	62	16	61
GTCGCTTGTCCCTAAG	ref_3975_RC	129	35	118	116	41	117	42	83	32	88
CTAGTAGGGCTAAATC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CAGGCTCAATTACCCC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GAGGTAACCCGCGGCG	ref_3975_RC	333	54	438	365	74	326	87	300	71	305
ACTCGCACTTGCGCAT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GTTTCACTCTAAATGT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTTATCGTACTGTGCG	ref_3975_RC	23	4	20	17	7	6	6	10	7	9
GTCCGGGCGTTCTGCC	ref_3975_RC	238	80	258	246	96	223	83	243	79	206
ACGGTTGCTTACAACT	ref_3975_RC	554	139	687	566	163	475	154	537	168	430
CTAAGTGCGTGTTTGT	ref_3975_RC	141	42	217	172	57	153	66	154	50	144
CGCTCTAAGGTTTCTT	ref_3975_RC	2	7	3	3	3	1	8	0	5	3
AGTCCTAAGGTATCTT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ACACTGAACGTTTGGT	ref_3975_RC	61	16	78	89	15	66	17	59	16	72
TACCACCTGTAATTCC	ref_3975_RC	46	12	63	70	18	51	14	67	10	56
CCAATTAGCCACCCGA	ref_3975_RC	17	15	18	12	11	20	20	24	11	17
TGCCTACAAGACTGGT	ref_3975_RC	90	25	100	82	20	65	21	82	23	51
GAGGGTCGTGTTTGGA	ref_3975_RC	237	53	281	278	51	224	62	266	73	186
TTGTGTTGCCATAACG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CGGAGAGAGGTGGTGT	ref_3975_RC	323	76	402	325	73	276	82	303	85	256
TTTAATTTCCGAATCT	ref_3975_RC	26	3	22	26	3	14	1	15	4	22
AATGCTGATCGACCCA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTACCGTGCTTTGCGG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ATCACTAGAAGGATCC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CGTCGAAAGCGTACTT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TTTTGGCTTGCGAACG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TAACTCTTTTTTAGGC	ref_3975_RC	279	53	300	273	52	246	44	211	58	200
AAAGTCGAGGATATCC	ref_3975_RC	449	86	576	438	90	433	100	407	118	370
CTCTCAGGGATCGCCC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ACCCATTAGGCGTTGT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CGAAGTGTCTTGCAAC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GTAACTCTCCATTGTA	ref_3975_RC	140	130	142	110	151	86	142	106	155	92
GAAGTTACCTTCGAAG	ref_3975_RC	16	7	11	12	0	12	0	8	7	7
CGGTTATGCGTTCCTA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
AGACTGGCGTAACACT	ref_3975_RC	170	39	207	172	36	139	25	173	56	153
TTCGTCTCGTACACGT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
AGGAGTTCATCGTATT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CACAGCCATGGATGGT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GGATTACTTACGCCTG	ref_3975_RC	56	18	87	64	19	55	27	63	21	63
CATCATCTCCTTAAGC	ref_3975_RC	14	9	25	28	4	13	5	17	8	12
TGCGCTTCTATTGTCA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TTATCCCCTCGGTACG	ref_3975_RC	392	153	574	495	153	413	170	436	171	404
GTGCTCTTATTTCATA	ref_3975_RC	53	11	73	66	20	53	18	43	13	57
CACAATGATTGTTTTC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ATATCGTCTCCACCAG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTGACTAAATCATAAT	ref_3975_RC	86	25	104	112	16	93	23	81	20	65
AATTGGTGGAAACCTA	ref_3975_RC	27	5	35	26	7	32	4	15	5	23
ATCTAGTAATGCTTAA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTAAGTTGCTTCGCCA	ref_3975_RC	49	6	48	40	7	34	11	35	9	36
TTCTCGGAGGGTTACC	ref_3975_RC	170	37	241	199	53	160	55	223	53	163
CGTCGTAATCGTATGG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TCCCAGGCCTTGACCT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTATTTATAGTTCCGG	ref_3975_RC	52	11	81	63	14	52	21	46	16	43
TCCTGAATTCCAAACC	ref_3975_RC	31	8	46	29	6	39	5	26	5	23
ACACACAAATGTCCTA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TTTCCAGTTACATGGC	ref_3975_RC	20	8	33	31	2	18	4	23	3	14
AACGCAGGGACTCCCT	ref_3975_RC	62	7	73	52	25	39	15	48	13	41
GTGCGGTCAGCTAGGT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTTCTTGTCTTTGTGG	ref_3975_RC	87	19	67	82	14	62	19	60	17	64
AGTGCCATAGGATATC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CCTCTTAAATAGCTCC	ref_3975_RC	43	12	73	55	15	60	18	49	18	58
TGCTTTCGCTTCATCC	ref_3975_RC	175	65	268	283	51	229	82	246	62	189
ATTACATTGGTTCGCG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CCCCGTTGCGGCGGGT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GTCTTCCCTATTTAGC	ref_3975_RC	78	28	110	91	20	87	23	91	21	89
GACCCACGACTGTTGT	ref_3975_RC	89	21	80	88	30	67	23	102	29	65
ACACACTCAGGGAACA	ref_3975_RC	48	9	59	44	11	49	5	42	9	34
AATAAAATCGTCACCA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCACCTTCTTGC	ref_3975_RC	93	17	120	88	25	100	16	106	22	71
CACTATAGTTCCTGGA	ref_3975_RC	348	79	349	308	79	275	78	290	70	207
TTTCCCTTTTTCGGGC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TGGTCGTCGGCGTAGG	ref_3975_RC	40	11	52	42	11	37	11	51	5	28
TATCTGGCTACCATGC	ref_3975_RC	139	35	193	151	40	142	36	133	40	132
TTTCGACTCATCACAA	ref_3975_RC	362	107	453	399	98	362	95	345	95	340
TGACAAGGTCCGCCCT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCTCGTTCTGCG	ref_3975_RC	170	86	254	268	92	181	82	182	91	193
TACATCCCGTGTAATT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ATATGACGTTACACTG	ref_3975_RC	185	52	258	193	62	178	56	187	58	195
GGTGTTATAGGCCTAT	ref_3975_RC	270	58	310	285	68	252	70	226	58	213
AATTAAAAGACATCTT	ref_3975_RC	247	45	321	274	70	244	48	267	70	192
TGTCCCCTGCTGCTTG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTGACAGAAACTTTTG	ref_3975_RC	279	65	305	297	54	241	72	232	60	240
GGGCGCCTGCGGTTTC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTCTTATCCTGTCTTA	ref_3975_RC	61	15	85	75	18	59	9	60	18	61
GTGGCATGTTATGTTA	ref_3975_RC	53	15	70	75	9	72	20	67	16	54
AATTCCTCCCTAATTC	ref_3975_RC	39	9	46	37	9	41	6	36	17	35
GGCCTAATCCAATGAG	ref_3975_RC	136	37	208	177	37	145	37	146	37	143
CTGTGATCCATCCTCA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GACTCATGACCAGTAG	ref_3975_RC	113	19	116	114	26	88	33	111	26	104
CTAACGAGCATCAGCC	ref_3975_RC	245	65	329	255	57	255	57	219	47	232
CCGGACTTCCCTCTTA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GAGAGGGGCAATGGTA	ref_3975_RC	138	35	168	163	42	157	40	156	38	123
TTGGTTCTGATGCACG	ref_3975_RC	94	21	119	116	22	118	19	97	29	92
CTGCAAGTCTGTGTCT	ref_3975_RC	226	87	309	280	68	233	63	267	77	212
CCGCTATGGTTGTAAT	ref_3975_RC	77	26	89	83	15	73	19	81	19	75
TCGGCATATGGAAGTT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ACACCCTGTGTTATTT	ref_3975_RC	189	46	229	207	54	208	37	169	33	164
AGATGAGCGAGGTGTC	ref_3975_RC	235	53	327	287	46	236	53	238	63	226
TCCACAGGAGTGTCTG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CGTCACTAGCATAATA	ref_3975_RC	103	18	127	153	37	130	24	95	29	93
GTGATCTGCCGGGTAT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GTTCGCCATTCGTAGC	ref_3975_RC	56	11	68	49	7	47	21	42	23	43
CTCGAAATTCATCACG	ref_3975_RC	127	20	160	134	18	109	34	101	37	95
CGACTAGATGTCACGG	ref_3975_RC	287	56	352	342	70	262	62	273	66	237
ACAGCTGCCGACTACC	ref_3975_RC	58	17	64	50	10	42	13	62	15	42
CGCCAAGTTTCTCAAC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CGCTCAACGGCGATGC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ATCGCACATGCGCCAC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
ATCATGAGCCGTAGAC	ref_3975_RC	255	65	290	252	66	241	83	254	79	215
CAGGATTACATCGACG	ref_3975_RC	1342	327	1729	1468	343	1212	343	1341	352	1233
TATGAATGTTTCCATA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CTGGCGCTTACTTAAA	ref_3975_RC	17	4	23	14	7	30	5	27	4	22
CTTTCCGACTCGCTGC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CACGAGGATAAGTCCC	ref_3975_RC	901	248	1172	1100	249	942	263	963	255	831
ACTCGGGGCTTGTCGG	ref_3975_RC	9	0	10	6	3	5	2	15	1	7
CTCCGCGACCAGTGCT	ref_3975_RC	7	4	6	7	2	8	7	7	1	4
CGGTAGTTGTCCAGCA	ref_3975_RC	228	52	284	257	55	224	75	257	66	208
TAATCTATTTTGTTTG	ref_3975_RC	17	0	30	32	3	16	8	24	7	18
CCTCTCGCTGTAATAG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
CGAATTTTGATCGTTG	ref_3975_RC	12	4	24	18	6	11	1	12	4	20
TTATGTAAGTTTACTT	ref_3975_RC	33	10	42	57	12	40	8	35	15	50
GGATTATCGCCTGTCG	ref_3975_RC	30	14	45	41	16	36	12	44	11	28
AACACGGTTGGTGGTA	ref_3975_RC	7	2	14	4	1	5	1	4	2	4
GACAGATGACCCCTCT	ref_3975_RC	30	7	46	43	7	39	11	25	6	40
GTATTGAAGGCGATAC	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TTGCAGCTGAGGCCAT	ref_3975_RC	94	14	134	122	24	89	29	98	26	75
GGTCTTCGCGTATACG	ref_3975_RC	316	61	357	328	72	266	80	255	79	243
CTGTCTCCCTCTTGGA	ref_3975_RC	198	56	233	213	63	200	65	223	68	171
TCGAATGGGGTAGACA	ref_3975_RC	308	114	337	281	97	294	103	271	105	248
GGGTGCTGGGCATGAA	ref_3975_RC	174	47	245	213	61	225	57	205	39	170
CCAAATTCCTGTAGCT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GTAGATAATTTAGAAT	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TTTTATACTGTCCACT	ref_3975_RC	188	49	258	203	67	211	51	219	73	190
TTACACTCCCCAAGTG	ref_3975_RC	0	14	2	1	8	2	10	2	8	1
GGGCCAGGTCGATTAA	ref_3975_RC	132	35	132	131	38	118	35	125	44	125
CACGGTTTGTACATGG	ref_3975_RC	137	57	141	116	60	118	52	131	69	138
TACTCCGTGGGCCGGG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
GCTTTGATTATTATTG	ref_3975_RC	77	25	112	111	24	101	15	92	22	99
TCTACATTTACTTAGG	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTTGAAGGCAAC	ref_3975_RC	72	17	103	83	34	51	21	82	19	50
TGCGCTAAGTGTCTCA	ref_3975_RC	0	0	0	0	0	0	0	0	0	0
AGTCCATTCTTGCTCC	ref_3975_RC	72	13	99	87	14	76	24	96	27	67
GTCTCTTACGGGTTCG	ref_3975_RC	253	60	300	254	68	233	66	278	59	221
TACGCTAGAGCTAAAC	ref_3975_RC	711	225	823	800	198	589	195	703	218	674
GAGGTATCCAATAAAA	ref_3975_RC	15	4	20	20	4	10	8	13	6	20
TTAGACTTATGGTGGC	ref_3975_RC	145	36	230	187	39	154	40	144	36	143
ACCTTGACCTCAGATA	ref_3975_RC	83	23	99	76	19	81	30	67	32	77
AGTGCCAGATATGGCT	ref_3975_RC	32	7	28	32	7	43	15	32	7	21
TATCATCTATTTGTGG	ref_3975_RC	573	93	692	576	119	517	121	487	111	412
GTAATCTAATGGATAA	alt_1903_RC	8	4	4	1	6	0	2	4	7	1
TTCCGTGTCCTCAGGT	alt_1903_RC	24	24	28	24	46	27	35	22	31	24
TGCAGTGTTTTGCACG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
AGTTGAAGCCTCGTCA	alt_1903_RC	45	61	47	43	74	37	61	37	67	38
TTTGTTAGAGCCTTTT	alt_1903_RC	24	26	19	22	30	27	33	24	27	16
AACACAAAAACTCAGG	alt_1903_RC	15	13	28	19	20	13	22	12	12	12
TCCAACCATCACGCCT	alt_1903_RC	14	38	28	17	46	11	58	18	45	20
TACCATTGTATTCACC	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
GGTTCGATTTTCTAGT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
GGCTCCCGTGTGCACA	alt_1903_RC	22	36	15	27	32	19	47	15	48	12
GTCAGTATGTGTTACC	alt_1903_RC	3	7	1	0	5	1	6	7	6	3
ATGACCGAGACTCAAT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TCATGAGTGCCTTTTG	alt_1903_RC	12	23	25	13	24	8	28	21	18	14
CGCTAGGGCGTATTAA	alt_1903_RC	39	36	61	34	46	43	57	33	47	30
ATGTGCTAATCCTGTA	alt_1903_RC	7	7	5	5	6	4	5	5	4	3
TAATTCGATCTCACGG	alt_1903_RC	29	42	39	21	25	29	39	18	31	31
GTCATCAGGGTCAGAT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TCCATCATTCTTAAAC	alt_1903_RC	15	26	24	17	27	18	16	15	33	23
CATATTTTAGCTCGCG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
CGAGTCGGAGCACAAA	alt_1903_RC	24	50	23	20	49	17	68	26	61	19
TGCACTGCTGCGCAGT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TCCGGCCAGCGAGACT	alt_1903_RC	5	13	15	10	27	13	14	23	15	22
CGGTCACAGCGCCGGT	alt_1903_RC	7	23	12	11	21	8	23	14	18	5
AGGCTAACTGTTTTTG	alt_1903_RC	21	30	35	25	41	24	27	24	39	27
AACGGGTTTTACGTAG	alt_1903_RC	30	48	43	36	59	36	53	38	47	18
GGGTTTTTAATTCGCT	alt_1903_RC	0	2	0	6	6	7	4	1	2	5
TCTCTTATGTTCGGCC	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TTCACAGTAAACTGGA	alt_1903_RC	10	21	15	14	26	13	23	17	18	11
TTTCGAGCCTGCTATG	alt_1903_RC	34	46	52	39	65	48	66	31	55	21
CGGGCACGATTTCTGT	alt_1903_RC	71	102	74	88	79	59	98	52	94	73
GTTTTCTCTTTGCGAT	alt_1903_RC	10	17	4	10	13	9	23	13	17	16
CCAGGTTCGTCCGCTA	alt_1903_RC	24	45	25	35	42	35	51	21	45	34
GTTATTTGCTTGTTCG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
ACGCGGGCCCGGGTTC	alt_1903_RC	14	11	17	10	8	9	13	12	19	15
CATAGCGGAGAATAAT	alt_1903_RC	23	13	13	14	8	13	17	23	17	15
AGTGCATTCATTGCAG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
CTCCTCACTGAATTCG	alt_1903_RC	107	176	146	118	167	98	185	100	182	104
TCAAGCCACTGGGATC	alt_1903_RC	20	40	27	17	35	13	49	7	31	6
CTAGTTTCAGTATACC	alt_1903_RC	2	9	5	6	5	6	11	1	13	6
TGGGGCACGATTTATA	alt_1903_RC	14	30	16	13	16	9	13	11	20	20
TGTTATGGACTGTTGT	alt_1903_RC	5	13	11	5	7	5	9	4	19	5
CTCAATTTAAAGCTCA	alt_1903_RC	66	231	115	91	251	92	259	89	273	76
ACAACTAAGTATGCTT	alt_1903_RC	44	63	49	40	72	37	73	44	62	39
CTCTGTAAGTGCAATG	alt_1903_RC	36	57	40	31	64	47	59	26	59	33
CACGCATGAGGAGCGT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
CGCTGTCGGTAGGGCC	alt_1903_RC	63	98	78	75	91	62	89	51	109	60
ATTCGTGCTGTCTGGA	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
ACATTTGTCACCACGT	alt_1903_RC	24	50	28	28	40	22	30	23	40	18
GATGCCCAGTACAATA	alt_1903_RC	14	17	20	11	21	7	30	17	19	17
TCGAGTAGTTTAGGTA	alt_1903_RC	54	63	73	52	73	43	76	42	52	50
AGTGAGTTCCTCGTCC	alt_1903_RC	79	111	92	76	103	64	107	55	97	68
CTTGACGTCGTCCAGT	alt_1903_RC	61	107	45	52	92	43	106	62	85	36
CCGGGGTTGCAATCAT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
ATTTTCATCGGCTTAC	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
ATGCATTGAAGCATGG	alt_1903_RC	44	43	37	37	47	35	31	48	37	36
AGATCCTCTACAAATC	alt_1903_RC	76	127	124	101	143	88	123	89	150	94
TCAGGCTCTTCTCCCC	alt_1903_RC	29	88	18	35	83	30	112	25	105	18
ACGGGGGATCTACATT	alt_1903_RC	10	15	18	14	23	22	13	11	28	19
TCTACCTCCATTATAG	alt_1903_RC	20	41	36	30	49	24	49	41	49	26
TTAAGACTTTAATTGT	alt_1903_RC	5	9	6	8	4	7	3	3	2	11
GCCTGAGACGTTCCTC	alt_1903_RC	37	49	34	41	26	37	45	29	58	28
TGACAAACGGGTGTTT	alt_1903_RC	5	8	12	8	17	7	18	9	14	5
ACATCTACGCCTTGGA	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TCTCTTTTTCTGCAAG	alt_1903_RC	2	8	2	4	13	2	2	0	8	1
CGCGGAAGAATTAAAG	alt_1903_RC	123	220	165	146	222	112	226	110	223	120
TCTGCCGCCGAGCTAA	alt_1903_RC	3	4	3	7	1	5	1	2	7	4
CTACCCTATATAGATT	alt_1903_RC	66	93	66	45	84	42	93	47	120	40
CAAGCTACTTGGCGCC	alt_1903_RC	59	54	102	76	73	61	63	63	82	54
AAGCTTCTTCTGACGC	alt_1903_RC	98	111	124	139	138	114	143	86	130	102
AAGCTTCTTCTGCCGC	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
ACCGGCGTGCGTACGG	alt_1903_RC	15	21	18	20	26	14	21	22	27	18
ACGAAAACTTAGTGGC	alt_1903_RC	34	32	46	38	45	37	46	34	44	32
TGTGCTGCTCTATCTT	alt_1903_RC	22	24	30	8	19	12	22	18	25	15
GTACCGAATCATTATG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
GAGAATCAAATAAGGT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TTGTAAGCAGCACCGG	alt_1903_RC	21	21	30	21	16	17	26	17	31	18
CATGGACGCGTGAGTC	alt_1903_RC	114	94	83	75	95	65	98	58	120	76
TCTGTGTTTGTTTGTC	alt_1903_RC	21	15	22	9	19	14	19	13	30	13
GCTTTTGTGTCATACA	alt_1903_RC	7	16	6	9	12	3	15	4	23	9
CCTTCTGCCGGATCTC	alt_1903_RC	9	23	11	11	12	11	23	14	19	15
TACCTTCAATGTTGCG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TTCTCTTGGCGAGACC	alt_1903_RC	20	19	14	19	20	6	22	14	33	11
GCTTGTGTATGCTTCG	alt_1903_RC	12	25	32	15	28	25	25	21	31	19
ATTCCTTGTGGTCAGA	alt_1903_RC	0	0	1	0	0	0	0	0	0	0
ATGCGCAGTCTTACGT	alt_1903_RC	98	127	110	80	124	86	116	83	123	86
AATCGGGCTACAAGCC	alt_1903_RC	27	30	22	29	30	24	31	24	18	19
CTTAGCTCCGACGCCG	alt_1903_RC	25	44	28	37	55	23	51	27	58	29
TTACAACTTCAGTGCG	alt_1903_RC	52	64	46	38	62	30	84	26	57	42
CTAAAGTTAGCGGGGG	alt_1903_RC	8	8	8	8	5	6	7	6	10	1
ACCGGGCTCCGCCTAT	alt_1903_RC	66	95	107	63	87	69	92	64	99	57
GAGACTTCAATTGTTT	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
AGCTCATATAGTCCTC	alt_1903_RC	24	51	43	31	38	32	53	29	53	28
GTGCGGCAATGAGATA	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TTATGCGGTCGCAAGC	alt_1903_RC	2	12	2	2	7	5	12	1	7	2
GGCAACTGAACTATAA	alt_1903_RC	104	123	89	89	116	84	137	82	149	84
CACTTGGACGCTGTTT	alt_1903_RC	4	5	7	6	8	2	10	4	4	6
CCATTCAATCTATGTG	alt_1903_RC	23	24	13	15	27	8	24	17	31	15
CTATGACCTGGTGAGT	alt_1903_RC	61	77	81	55	84	66	98	80	88	67
TAGATGAATTGTGCCG	alt_1903_RC	21	27	30	27	42	26	39	22	38	26
TTACTTTGACGCGCGG	alt_1903_RC	33	26	41	27	36	21	45	17	44	23
GTTCCAGAGCAGACTT	alt_1903_RC	5	7	5	2	17	7	9	4	15	4
ATTGAGTGACACGTGG	alt_1903_RC	85	131	121	98	118	109	142	81	138	89
AACCTTCGTCAGAGTG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTCTGAATAATG	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TTCCTTGTATAAACCC	alt_1903_RC	0	0	0	0	0	0	0	0	0	0
TTCAGAGTTAACGTAT	alt_1903_RC	11	15	10	13	19	19	12	14	14	12
AACTCATTCTTTCTAC	alt_1903_RC	25	19	19	19	20	23	23	17	22	17
ACGTAATTCGTTTCTG	alt_1903_RC	53	65	63	47	65	51	57	39	58	46
GACGGTAACTACGTAT	alt_1903_RC	29	56	40	31	73	24	57	33	63	43
TAGTCTTTGATTTAAC	alt_1903_RC	25	49	44	29	50	27	88	35	72	25
GCACCAAGTTTGCCAC	alt_175_missing	32	35	37	28	37	18	55	32	45	34
GTGGGTGTTACATGGG	alt_175_missing	48	77	62	51	70	41	61	36	99	45
CTCGTCTATCTAGCAG	alt_175_missing	7	6	12	8	15	6	6	4	13	9
CTGTCGGTTTTTGTGT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
CTTACCTCCCTGGTGA	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GCTACCATTAACTTGT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
CGGTTTTAACATTATT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GGCGCTTGGTCGTTGT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TACTTATTGCAGCTCA	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GATGTTAAGTTGACAC	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TCGTCTGAGCAGGTCG	alt_175_missing	4	8	10	6	3	1	8	6	5	6
TGAAATAACGTTGTCT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TATAACTTGTCCCATA	alt_175_missing	3	10	1	6	5	5	6	2	6	5
ACGAGAGTGACCTGTT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TATACGGTGGTACACA	alt_175_missing	0	0	0	0	0	0	0	0	0	0
ACTGACACATCCGAGT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GCGAACCGCGGTTTCG	alt_175_missing	6	4	17	9	5	5	10	7	9	5
GGCGCAGGGCCCGGTT	alt_175_missing	11	8	5	11	8	7	8	6	11	6
GAACCTTGACACCAAC	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TTACCGGCGAGTTGTC	alt_175_missing	11	18	11	9	18	16	13	12	16	10
GTACCTACCTCATACG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GACATTAATTTCCTCG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
ATTTGCGGTCCGTTAG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TTAATCACGTAACACG	alt_175_missing	13	26	28	26	40	11	20	28	23	21
TTGTGTTTAACCGTTG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TGCCTCTGTCGCATTT	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GTGTCGCTGTTCCCGG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
CCGACTTCCTCTTATA	alt_175_missing	0	0	0	0	0	0	0	0	0	0
CTCTTAATGTTCCTGC	alt_175_missing	10	18	17	14	10	16	21	8	18	8
TTCATTAATCATATTG	alt_175_missing	7	14	16	9	11	6	12	10	8	3
TATGCAGCGCCCGTCA	alt_175_missing	9	11	5	11	12	5	8	6	12	5
TGGCTCTCTCGCCGTT	alt_175_missing	2	4	6	4	1	1	6	1	5	3
GGATTTACTGGGCCTG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
CCGGCGGTTTGCAGGA	alt_175_missing	0	0	0	0	0	0	0	0	0	0
ATCGTGAATCTGTAAG	alt_175_missing	10	13	9	8	15	9	11	11	14	5
TGCTTGTCAGTGCTAG	alt_175_missing	17	29	23	12	16	8	17	9	22	9
ACCCAACCATCATCGG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
AAGCTAGAGAGGAGCA	alt_175_missing	27	14	19	17	27	24	20	32	19	24
AACCTTGCAATATGGG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
TGGGAGGCAACTAGCC	alt_175_missing	8	16	18	13	17	16	18	16	14	9
GTTAAGCATCTCTCAT	alt_175_missing	10	15	12	6	8	18	18	9	15	8
GTTCGTTGGTCCACTG	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GCTTGACATCCTCAGA	alt_175_missing	0	0	0	0	0	0	0	0	0	0
GTCCGTGCATTCCCTT	ref_244_RC	0	0	0	0	0	0	0	0	0	0
CTCACCGAATAATATT	ref_244_RC	0	0	0	0	0	0	0	0	0	0
CTTCTCCCAAGTTACC	ref_244_RC	20	47	53	40	27	27	32	17	24	16
ACGAATACACATCCAC	ref_244_RC	6	5	2	5	1	4	4	4	7	6
CCATTCGACTCCTGCA	ref_244_RC	22	68	20	16	83	18	88	23	61	31
GTTTCTATGTAGGCCC	ref_244_RC	23	9	14	21	7	10	9	11	9	13
TCTGAGACAGTGACGA	ref_244_RC	50	49	59	30	45	49	36	37	57	34
ATCGTTATGTTTGGCA	ref_244_RC	22	13	16	18	8	13	17	9	14	9
CAGCCTTTGACCACAG	ref_244_RC	19	35	46	24	26	34	42	26	57	25
GCCGTTTGGTGGGGCG	ref_244_RC	8	9	10	6	15	16	6	4	6	10
GACCTTGTAGTCGGTG	ref_244_RC	61	56	61	51	49	62	49	52	52	54
ATCAATAGGTAGTGGC	ref_244_RC	34	45	51	44	45	40	41	41	52	42
CTGTTAGTACGTACAT	ref_244_RC	35	29	50	49	35	35	47	47	41	37
ACGAGGTCGGTTAACC	ref_244_RC	24	16	25	26	25	25	32	24	18	22
GCGCGTAGCACCGAGC	ref_244_RC	0	0	0	0	0	0	0	0	0	0
CCTTAATTGATCCCCT	ref_244_RC	15	9	20	16	9	11	22	16	13	11
GGATGTAGGATCTGGT	ref_244_RC	199	174	262	200	163	209	167	148	220	157
TCTAGTATTTCTGCCT	ref_244_RC	21	22	34	29	24	21	22	27	28	22
ACCGAGGGGGTGCAAT	ref_244_RC	35	47	50	55	54	69	36	59	54	48
TGAACCCAACTTCGTC	alt_244_RC	57	37	74	62	43	55	42	59	41	46
TGCCTTTTATGTCCAT	ref_244_RC	19	16	19	20	7	13	11	8	12	13
TAGGATGACATCCTTT	ref_244_RC	21	15	22	14	21	11	18	13	10	22
TGCAAGAAGGGACGCC	ref_244_RC	0	0	0	0	0	0	0	0	0	0
TCGCACTATTATCAGG	ref_244_RC	14	12	15	17	16	11	14	8	13	16
TGCGACAGGTAACTTC	ref_244_RC	56	28	52	36	31	38	28	34	34	38
GCATTCCTACTCATAA	ref_244_RC	6	8	11	8	12	8	5	8	12	5
TGGTGCGACTTCTCCC	ref_244_RC	68	52	102	80	55	62	57	65	66	66
ATTGGACTATACCATG	ref_244_RC	14	10	18	20	7	14	15	14	9	4
TCTTGCAGCGAGAATC	ref_244_RC	1	4	10	5	7	6	7	8	7	5
GCCCCTTTGAAAGCCT	ref_244_RC	50	51	60	60	48	43	34	41	49	53
TGGAGTGATGAATTCT	ref_244_RC	18	12	15	21	15	14	11	18	11	9
CGTGCCAACGATTCTT	ref_244_RC	44	77	84	73	76	46	72	63	42	49
CGAGTTATTCGACTTC	ref_244_RC	42	20	43	31	39	45	27	25	29	42
TTATTTATTAAACGTT	ref_244_RC	7	4	4	6	9	5	6	7	4	7
GAAGATTATTGTAGAG	ref_244_RC	128	102	160	146	113	161	112	130	94	98
GCTGAACCGTAATCTG	ref_244_RC	11	10	19	21	19	16	17	20	31	12
CGGAGAGGGGTAGTCC	ref_244_RC	63	77	87	75	72	71	78	85	78	72
TGATGTGCTTTTCCCC	ref_244_RC	18	17	24	16	7	29	17	20	18	19
CGCGGACGAAAACTTA	ref_244_RC	22	21	31	28	20	26	6	23	20	23
TTTTCACGGTCTACGG	ref_244_RC	0	0	0	0	0	0	0	0	0	0
TTCTCGGTCTTTGCTT	ref_244_RC	49	23	47	50	29	38	32	52	26	40
TAGAGGGAAAGAATTT	ref_244_RC	10	12	16	14	13	6	10	11	8	9
TGGCCTCGGCCGCGTC	ref_244_RC	42	46	52	66	47	49	44	61	35	52
ATATGGGTTTCATGAA	ref_244_RC	0	0	0	0	0	0	0	0	0	0
TTGAAGATACGTTTCA	ref_244_RC	0	0	0	0	0	0	0	0	0	0
TCCTTACGAGTCAAGA	ref_244_RC	37	23	46	32	41	57	39	43	36	30
CCGAGAAGAAAATTAT	ref_244_RC	14	10	14	3	10	11	9	12	13	9
TAGCAATGTTTATTAG	alt_244_RC	214	189	244	212	205	217	214	230	208	176
CGTCCATACAAGTCTG	ref_5083_RC	5	8	4	3	8	0	10	3	9	3
GCACATTTAAAATCTT	ref_5083_RC	13	30	15	19	24	14	27	11	22	11
GTCGCATGGCTGTGCC	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TCTGGAGCATTCCTTG	ref_5083_RC	23	61	23	17	46	28	32	12	56	14
CGGGCGATCTGTGTCG	ref_5083_RC	37	41	18	39	52	24	35	31	43	21
TCCGCGTATTAGTTTG	ref_5083_RC	11	22	5	14	26	7	12	13	21	8
TACCATTGAGCCCCAA	ref_5083_RC	8	15	8	13	17	7	12	6	23	10
TAATTCGCGCCGCATT	ref_5083_RC	55	82	87	61	97	57	77	60	115	73
GTAACTGGCAACTCTC	ref_5083_RC	2	14	6	6	8	6	11	7	18	5
GTCCGATTGTGTTTGA	ref_5083_RC	20	36	19	10	34	13	59	15	42	20
GCCGCTTACATTAAAA	ref_5083_RC	13	32	7	11	28	12	25	7	36	12
TTACGCGCTAGGTTTG	ref_5083_RC	14	20	24	16	31	14	27	9	25	5
AGCTTGAGGTACCGGT	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TCGCGGTCGCAATTTA	ref_5083_RC	19	21	18	15	15	21	18	17	24	13
TTTGCCCAAAATGTCC	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
CTCCCTGCCACTGATA	ref_5083_RC	27	80	39	38	70	41	91	41	68	33
GAAGTTTCAAAAGACC	ref_5083_RC	39	68	43	47	78	36	81	31	77	26
CAATCGTTAGTAGAGC	ref_5083_RC	34	42	31	11	37	23	46	20	35	18
CCAATCCAACCCTGTC	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
AAGTTCTGAGCACGTC	ref_5083_RC	29	46	25	21	50	22	53	19	38	21
ACCCACCAGTCCTTTG	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TCATTTGTTCGCAAAA	ref_5083_RC	15	19	20	9	26	17	23	9	21	11
CGAAGCTTTGCTGAGA	ref_5083_RC	31	48	30	31	32	20	49	25	50	26
TGTGTGCTGAGATGAT	ref_5083_RC	72	78	76	76	91	66	106	63	114	70
ACTCCGAGAATGATTT	ref_5083_RC	40	57	41	46	50	32	60	24	61	31
AGAGGTCGGCAGTAAC	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TCAAGACTACCCTCCT	ref_5083_RC	3	17	14	5	11	12	22	3	19	6
TCCTTGTTCGGCCACT	ref_5083_RC	3	3	10	6	15	4	14	11	10	6
GCCCATTGCTTGCGAC	ref_5083_RC	11	17	14	13	24	9	24	5	25	10
TCACCTATTTGCACAA	ref_5083_RC	2	5	3	1	6	1	4	3	5	2
GCGGTCCCTGCTGGGA	ref_5083_RC	34	47	46	35	59	34	54	33	55	32
AGCGGCTTGACTTGGT	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TTAGGGTCCATAATAC	ref_5083_RC	10	12	8	8	14	7	19	7	19	7
GACCTTATAAAATCCG	ref_5083_RC	22	29	32	31	26	21	53	14	42	19
AATGTTCTTGGTGCAT	ref_5083_RC	67	145	68	80	146	77	150	65	156	62
ATTAAGACGAGCCGCG	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
AAAAGCAAACCTTTCG	ref_5083_RC	68	113	112	94	137	82	132	79	158	67
TCTCTTGCATAGTAGT	ref_5083_RC	14	10	9	9	15	14	9	8	23	14
GCAAACGTGCTTCTCG	ref_5083_RC	100	118	122	102	133	106	156	87	128	80
GATTTGGAGCGGGCTA	ref_5083_RC	0	1	0	1	0	2	2	0	1	0
CGTTTTCGACTTTCGA	ref_5083_RC	13	27	17	18	20	9	22	15	19	12
GGCACCGGATTCGCTA	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TAAATCCATGGTGGGG	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTATATGTATCA	ref_5083_RC	3	3	6	6	4	1	7	2	7	2
GATGAAGTGGTCTTTC	ref_5083_RC	17	21	30	19	23	15	15	9	27	20
CCCAGTTAGACTAACT	ref_5083_RC	3	10	7	8	15	4	10	5	11	1
TTTACGCCTTGGTGTT	ref_5083_RC	7	14	9	6	13	10	15	16	22	8
CGAATGCGCCAGTCAA	ref_5083_RC	62	75	81	54	76	61	89	42	102	44
GAAAGGTCTCTGGTGT	ref_5083_RC	1	18	4	2	5	2	10	4	7	4
ATTGCTGAACTCGTAG	ref_5083_RC	25	56	36	26	54	36	55	19	48	28
TGCCCAACTTCTGGAG	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
ACAGAATAACTGTGCT	ref_5083_RC	9	11	7	5	7	5	2	10	7	3
TCATCTACTTGAACAG	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TAAGGCGTCTGCCAGA	ref_5083_RC	10	22	11	10	21	15	21	14	23	7
GTGGTTATTTTTTCAG	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TTCGTTCGCGCTCATA	ref_5083_RC	16	25	14	6	13	17	22	13	28	15
GATATTACTACTCAAA	ref_5083_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCGTCTCTCCTT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
GATAGAGCCATCGTGT	ref_5812_new	14	34	22	14	36	9	33	17	45	10
TCTCGTACCTTATCAT	ref_5812_new	7	40	15	15	36	17	31	17	26	11
CACAACCTACTGAGGC	ref_5812_new	9	18	12	8	26	6	16	5	24	10
CTACGGTTCCTACCAT	ref_5812_new	25	64	16	22	65	16	57	13	53	12
ATGCGCTTTTGCCACT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
GTCACATAATGGTGTA	ref_5812_new	8	63	5	10	26	15	60	4	48	9
TTTTCTAAAGCTAACC	alt_5812_new	34	92	43	40	91	38	71	30	90	31
TTTGCTCGTTATGTGC	ref_5812_new	6	17	7	7	11	7	13	1	16	9
GTAGACCGGTTCGGGT	alt_5812_new	3	16	4	1	9	4	20	3	16	4
TCTAATTGCGTTCTAC	alt_5812_new	21	90	24	22	116	19	91	27	103	20
CACTCTGGATCACAGG	ref_5812_new	4	7	9	3	12	3	14	2	11	6
CGTGAATATCATGAGT	ref_5812_new	92	136	97	82	141	81	158	79	144	70
GGTCTTAACGTGTTGC	ref_5812_new	14	19	17	11	23	14	32	17	44	10
TATATGCCGCCCCTAA	ref_5812_new	0	0	0	0	0	0	0	0	0	0
TATGGGAGGCGAGAGG	ref_5812_new	0	0	0	0	0	0	0	0	0	0
ATTCTCGCGCGGTTAC	ref_5812_new	8	13	9	7	22	8	16	7	11	9
GGGTGAGTTTTATAAC	ref_5812_new	10	17	5	4	8	5	9	1	19	5
CTAGTCTCAATCAGTT	ref_5812_new	36	68	34	24	62	27	69	18	81	22
GCGAGCACGAGCAGCG	ref_5812_new	0	0	0	0	0	0	0	0	0	0
TCAAATTTCATTTTTT	ref_5812_new	20	23	23	12	43	9	35	18	31	20
CTCTTGGTGTACCGTT	alt_5812_new	24	31	27	19	28	20	46	17	42	14
TAGTTTCTTAGACGCT	ref_5812_new	2	3	1	5	4	2	3	1	7	1
ATCATTGCTGCCCTTT	ref_5812_new	2	3	1	1	0	0	2	0	0	0
CTCTAATTCGGATGAG	ref_5812_new	3	10	9	6	9	11	8	3	17	6
GCACATTCCGTCGGTT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
CACTTACAGGTCTACG	ref_5812_new	19	88	26	22	71	40	83	28	66	18
CTCCTCGCTATGGCTC	ref_5812_new	4	19	7	8	24	6	24	6	28	9
CCATCACATCAATACA	ref_5812_new	153	347	202	166	345	164	395	144	355	153
CCATCATATCAATACA	ref_5812_new	0	0	0	0	1	0	0	0	0	0
TGGGGTCGAATCCACT	ref_5812_new	35	139	44	38	96	26	127	23	125	29
ATTTGGGTGATCCTAT	ref_5812_new	8	25	9	9	19	18	22	12	34	8
GAGTGGCATTTTTTTA	ref_5812_new	15	44	24	30	40	9	52	10	43	16
GAACTAGCGTTCATAC	ref_5812_new	12	27	9	6	21	4	22	6	36	9
TGTACAAGTGCCCTCC	ref_5812_new	0	0	0	0	0	0	0	0	0	0
CTATTTAATTGAATTA	ref_5812_new	13	41	23	24	35	22	29	20	60	15
TAACTCCCAGTAGGGA	ref_5812_new	54	167	71	58	181	74	152	53	171	46
GCGTCCTTCTACGTTA	ref_5812_new	0	0	0	0	0	0	0	0	0	0
CACAGTAGTATTGGCA	ref_5812_new	7	23	9	9	19	10	28	14	15	7
TCAGATTACAGTCGCA	ref_5812_new	9	12	9	8	18	9	22	6	9	6
GCCGTTTTCTAGAACA	ref_5812_new	0	0	0	0	0	0	0	0	0	0
CTCACGTGCACTGGTT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
CTACCAACCGTGCAGA	ref_5812_new	14	28	4	4	29	9	35	4	30	3
CCGCCCCGTAGTTAGT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
GTAGCCTGGACATGTC	ref_5812_new	0	0	0	0	0	0	0	0	0	0
TTGGCGTATCGGCAGT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
ATTATGGCGATTCATA	ref_5812_new	7	8	9	9	9	6	18	3	14	5
CCGACCTATTAATCGT	ref_5812_new	28	78	36	29	101	24	99	28	84	28
TGCATAGCTTAGGGAT	ref_5812_new	26	37	31	24	46	22	39	24	43	17
ACAATTGGCCAGTTAC	ref_5812_new	0	0	0	0	0	0	0	0	0	0
AAGCCTTCGGTTTTTA	ref_5812_new	2	12	5	4	8	5	15	4	11	4
TGCATATAATCCCTTG	ref_5812_new	2	6	6	3	8	6	7	3	2	2
TTAATTTATGTTATGC	ref_5812_new	29	71	40	19	44	27	83	24	56	32
TCGCGTATGGTTCCTA	alt_5812_new	24	54	36	28	47	15	46	22	60	10
ACCTTCATGCGGTTGT	ref_5812_new	6	4	6	4	9	3	4	3	17	4
TTGTCCAATGGTGGCT	ref_5812_new	10	19	10	9	16	13	17	11	21	11
TTTTGTACAAACTGAA	ref_5812_new	44	71	41	28	114	27	106	36	124	32
GATTGTTGCTACCGCG	ref_5812_new	0	0	0	0	0	0	0	0	0	0
ACTGGGTTCTTGATTC	ref_5812_new	61	102	59	34	82	44	109	41	113	38
ATACACTTGCCTACTG	ref_5812_new	22	42	19	16	39	17	31	18	34	6
GTAGCGCATTTACCAT	ref_5812_new	18	50	19	21	37	19	40	19	50	16
TCTGCTTATTTCACCA	ref_5812_new	0	0	0	0	0	0	0	0	0	0
AGAAATTAGACTTAGC	ref_5812_new	0	0	0	0	0	0	0	0	0	0
GGAGTTCTAGCCAGCA	ref_5812_new	0	0	0	0	0	0	0	0	0	0
TTTACTCGAATAGTAG	ref_5812_new	67	133	73	70	128	54	153	53	159	50
AAATAGCACCTTATCC	ref_5812_new	48	76	33	36	65	40	73	28	74	53
GACGCTGGACCTGCGA	ref_5812_new	33	77	51	48	91	37	74	37	73	37
TTTGCCGGTTCTGGTA	ref_5812_new	3	17	6	8	10	10	17	7	11	7
AGTTGCTGGCGACTTG	ref_5812_new	6	5	5	3	6	4	5	1	6	6
GTTATACTCGTTTTGT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
TTTGCCATCCGCATCA	ref_5812_new	3	18	7	5	19	1	19	3	18	3
AGCGTTTGCTAAAATT	ref_5812_new	20	54	24	15	50	24	44	21	43	22
TAATTCAGGGTCCCTG	ref_5812_new	12	33	20	19	38	24	32	15	37	16
TGAAATTAGACTTAGC	ref_5812_new	45	90	58	59	110	42	107	44	88	51
GGGAAGAGCAAAGGTC	ref_5812_new	51	104	74	45	108	49	119	52	94	51
GCGACTGTTAGTCCAT	ref_5812_new	32	80	26	36	61	18	58	32	69	28
CATTTTCTCACCTGGT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
GGAGATGGTCGCTGTT	ref_5812_new	16	33	7	6	29	14	17	10	13	1
CTGGCTTTCTTTAGGC	ref_5812_new	12	42	30	20	49	17	52	27	37	22
TTGCCGATGCGGGAGT	ref_5812_new	2	2	0	2	1	1	1	1	1	1
CTTTACTATTGTACTG	ref_5812_new	2	7	2	1	9	4	9	2	6	5
TTTTTTGGTCCGCCCC	ref_5812_new	0	0	0	0	0	0	0	0	0	0
TTCCCTCTACGACAGC	ref_5812_new	94	233	94	80	276	65	246	69	224	82
TATCCTGGAATGTTTT	ref_5812_new	36	102	69	49	105	61	114	43	140	42
TCTCGCCTGCCCATCT	ref_5812_new	10	27	12	7	22	9	25	8	18	11
CGGACACATAAAAGCT	alt_5812_new	115	243	148	145	264	121	293	106	255	131
GTGAGTCTTTTATGTA	ref_5812_new	19	26	17	13	15	11	26	12	38	10
TACATTTGCCAAGTTT	ref_5812_new	24	35	26	18	42	26	39	19	44	16
CGGGTCTAGCAACTTG	ref_5812_new	20	101	25	22	133	29	126	22	143	26
AGACTACTCTCCAAAG	ref_5812_new	13	28	15	9	20	18	22	2	25	10
ATTGGTCCACATTGCG	ref_5812_new	0	0	0	0	0	0	0	0	0	0
ATTTTTCTATGGGGGC	ref_5812_new	12	23	15	18	32	24	34	18	35	13
GGCTGCTCAGTTCGGC	ref_5812_new	120	292	147	138	282	117	342	119	307	117
TCCAGTCTGGCCTGAT	ref_5812_new	31	79	45	34	95	40	105	43	111	27
CCTAGATCCAGGTTTC	ref_5812_new	11	41	15	10	43	14	42	9	43	23
ACGGCTTGGTAGTCTT	ref_5812_new	0	0	0	0	0	0	0	0	0	0
CGATAGTACGGACCCA	ref_5812_new	6	20	5	3	15	8	7	6	9	6
ATGAGGGAAGTAGCGG	ref_5812_new	0	0	0	1	0	2	0	0	1	0
CCTCTTTTTATAGTTT	ref_5812_new	14	39	17	10	43	9	39	10	39	6
AGTGGAGTGTTTAATT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
ACTACATCATGACTAT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGAATCTCGCAAT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTTGTCGACATGT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAACATTGGCCTA	ref_5419_upstream	29	24	37	20	30	29	24	28	31	37
GCCATGTAAATTAATT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
AGAATATTCGTACGTT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCTGATCGGTCGA	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCGAGTGTCAATC	ref_5419_upstream	75	63	87	80	54	90	44	58	65	59
CGGGACACTCCTGTGC	ref_5419_upstream	17	21	18	15	19	6	27	16	24	14
GCGAAAAGATGCACTT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGTGGTATCACG	ref_5419_upstream	25	24	43	27	23	21	18	27	30	21
TAGAAATTCTTCCAAA	ref_5419_upstream	89	49	80	79	38	80	65	80	43	70
CTGCGGGCGTCTGTGA	ref_5419_upstream	149	115	176	130	117	117	106	159	132	166
AGTCCTCGTCTCCTGT	ref_5419_upstream	32	19	28	27	19	26	22	32	15	9
ATGTTATAGTGGTGGG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCTGTATATAAGG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CTGTATCCAGGGCTGG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CACAAAGTTCCTTTTT	ref_5419_upstream	77	55	60	74	62	57	45	84	79	62
CCTCCTATACGAGATA	ref_5419_upstream	0	0	2	4	0	0	4	0	1	2
CATCAGCAACATTCTT	ref_5419_upstream	12	14	25	22	12	13	12	9	15	11
TATTCTTTGGTGGGCA	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGCACTGATATTA	ref_5419_upstream	17	12	17	16	5	23	10	18	14	14
CCATGGTCTGCTCCAC	ref_5419_upstream	36	17	41	23	31	30	19	28	25	36
CCCGACTGAATACTAC	ref_5419_upstream	20	19	12	19	7	12	15	14	16	11
CGACTGAATTTCGAAT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTGCAGAATGGTG	ref_5419_upstream	45	25	60	36	27	49	29	32	31	27
GCCTTGGTCGGCTCCT	ref_5419_upstream	11	6	4	2	5	3	3	3	3	7
CCCTCCTAGTTACTCT	ref_5419_upstream	10	6	17	5	12	7	5	9	7	11
GGCCGTATCATGTTTT	ref_5419_upstream	15	7	7	3	2	12	12	7	10	9
CCGTCACGGACCTTAG	ref_5419_upstream	35	34	45	38	35	28	39	37	39	22
TCAGTGCGAAGGTAGT	ref_5419_upstream	20	11	33	20	17	28	15	16	20	21
ATCGCCTTGCTTTAAA	ref_5419_upstream	71	46	84	76	54	71	61	67	62	86
GTATCCATGGTAAGAT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
AGCAAACAAATAGTCT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TACAAAGGTCGTTCTG	ref_5419_upstream	7	11	15	18	5	4	8	13	12	7
TTTCACTCGAATGACA	ref_5419_upstream	49	42	61	55	59	55	38	55	51	55
TTACGATTGTATCAAT	ref_5419_upstream	32	32	36	33	22	28	35	17	31	31
TTACCTGCGTCTGTGA	ref_5419_upstream	27	35	24	34	23	24	37	20	30	18
TACATTTCCCAGAGTT	ref_5419_upstream	36	32	51	47	36	32	40	37	25	31
AATCCCCATATGACCG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTCTTGGATGAC	ref_5419_upstream	57	58	101	76	54	61	76	66	64	75
TTGCCTTCTTTCATTG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CGTCACAATTATCTAC	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GCAATCCATGTCTGTT	ref_5419_upstream	30	21	36	25	15	14	17	25	24	22
AAACCTGCATAAGGCT	ref_5419_upstream	72	75	118	118	65	75	63	90	61	81
GATATGTGATTGCAGA	ref_5419_upstream	72	48	93	72	45	66	52	55	51	56
TAGTAGCGGAAAGCTC	ref_5419_upstream	24	13	24	17	14	21	11	19	18	16
GTTATCTGATGAACAT	ref_5419_upstream	7	4	9	11	11	11	6	2	7	7
TTTAAGTCTCATTATG	ref_5419_upstream	81	70	90	80	65	69	41	72	59	77
CTACCTGGTCGCTGTC	ref_5419_upstream	30	17	16	24	22	16	23	20	20	21
ATCCCTCTTGATCTGT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
AGCGAAGTTTAATGAC	ref_5419_upstream	15	16	28	21	19	21	16	10	22	29
TGATAGGGTATTGGCA	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CTGCCTATCAGATCGA	ref_5419_upstream	12	5	12	18	14	14	13	14	7	13
CTTTCCGCCCTGTCGC	ref_5419_upstream	15	7	18	12	14	17	17	7	9	14
TGTTGGTGGAGGAATA	ref_5419_upstream	10	6	18	19	15	18	8	14	11	21
TCTTTACGCTGTCCGT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TGTGATGTAGCTTATT	ref_5419_upstream	57	49	72	71	33	59	37	65	42	65
GTGCTAGAGGTTATTT	ref_5419_upstream	259	267	313	275	244	263	249	252	276	208
TGTCCTGTCATCAGCG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTGGTACGGGTTT	ref_5419_upstream	74	51	69	65	48	65	47	49	46	67
GAGCTAGAGGTTATTT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGGCATTCCTACT	ref_5419_upstream	18	15	41	25	20	28	20	28	32	12
CTTGCTTTTTATCTTT	ref_5419_upstream	24	17	17	11	12	19	8	20	6	30
GGGGGCTGGAATCGCC	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGAAAACTCATT	ref_5419_upstream	58	41	58	52	44	61	41	43	31	40
GAACGTGTGACTTCCT	ref_5419_upstream	30	31	32	31	22	37	19	13	33	44
AATCACCGTTGTTTCC	ref_5419_upstream	35	20	39	25	26	35	31	26	33	28
TTTAGCTACTCGTATA	ref_5419_upstream	11	4	2	8	14	7	7	8	9	6
CTTGAGCTAAACACCT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GCAACAGTCCTCATCA	ref_5419_upstream	48	57	52	56	50	45	51	40	49	28
ATAAGAATGCGATGTT	ref_5419_upstream	124	72	124	137	87	136	97	140	82	106
GTTGCGACCTTGGGTT	ref_5419_upstream	4	0	3	4	1	4	5	2	4	3
TGGTCCCGCAGTCCCA	ref_5419_upstream	35	31	37	26	13	37	26	25	35	27
TCTGCGCGTGGAACTC	ref_5419_upstream	43	44	48	48	39	43	50	30	63	33
TCGTGCTCCCGCACGT	ref_5419_upstream	58	43	69	53	33	52	53	57	44	56
CAGACTGGTGTTATGC	ref_5419_upstream	0	1	0	0	1	0	0	0	0	1
AGAACTCAATGGCGGT	ref_5419_upstream	70	61	63	72	44	77	51	71	45	70
TAGGTCTTACCAATCC	ref_5419_upstream	9	10	19	10	5	7	9	9	13	16
GTTGTTTGGGAGCGGG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTATGCAACTTT	ref_5419_upstream	38	15	46	37	29	34	23	43	22	25
GTTCACTGTCCCTGCA	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
AATTGCGGTCATGCCC	ref_5419_upstream	14	5	11	15	7	13	3	17	10	13
TGTTCAAAAGCCGACC	ref_5419_upstream	100	92	116	97	71	105	93	101	88	69
GGATTTCAGACCCCGA	ref_5419_upstream	12	0	7	9	2	7	1	5	3	6
TTGTTCAAGGACTCCT	ref_5419_upstream	55	57	69	72	40	66	41	45	53	50
GTTCGCCACACGTGCC	ref_5419_upstream	13	12	16	6	7	9	10	14	8	18
CGACCAGAGGACAGTC	ref_5419_upstream	66	58	82	86	64	59	55	51	65	53
CAAGTAGAGAGGGGGG	ref_5419_upstream	22	30	31	40	22	29	28	27	19	25
CTTAGTTAGGAATCGG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TAATGCGTTAGCTAAA	ref_5419_upstream	55	52	88	43	30	52	32	34	32	40
GGTGGCTCAACGTGAC	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
AATCATGGTACATGAT	ref_5419_upstream	26	32	39	50	26	37	25	29	33	36
CCGAAGGTACACCTTG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GCGATAGCGTTGCTCA	ref_5419_upstream	1	5	3	7	0	2	5	2	3	3
TATGGCGGCACTCTCG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GTAAAAAGAGTCAAAC	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTTATACTTCAGG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCCCTTGCTCGTT	ref_5419_upstream	62	71	78	100	88	51	70	70	78	67
TCTGCCCAAGGGAGGT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GACCCGAGCATTCTCA	ref_5419_upstream	4	2	4	3	1	4	4	3	2	5
AAGAGATTCTTTTTAG	ref_5419_upstream	86	85	107	112	86	105	84	113	95	97
ACCCATATTTCCGTCG	ref_5419_upstream	26	9	16	16	11	11	22	13	12	14
GCGTGTTTTGAAAACG	ref_5419_upstream	13	15	20	23	22	24	8	14	19	8
GATAGTGATTGAAGCC	ref_5419_upstream	49	47	64	36	29	47	37	55	52	47
TATAAAATACTCTCAA	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCACTGTTAAGTT	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
GTATCGTATCCTCACC	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTAGCAAAATAGT	ref_5419_upstream	31	17	21	22	7	23	21	20	20	19
GTTATTGCTATTTTTT	ref_5419_upstream	8	4	9	18	7	11	8	6	14	7
CAGTCATCTTACCGTG	ref_5419_upstream	0	0	0	0	0	0	0	0	0	0
CACTGGAATCTACAAG	ref_5419_upstream	108	79	145	131	79	95	69	100	97	89
TGTATTGGTACCGTTC	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
GCTTACGGAGTTTTAT	ref_5201_RC	144	78	167	155	73	136	89	126	95	129
AACTATTACCTGTTTT	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
CGGACGATTTGGCACC	ref_5201_RC	15	3	13	10	3	11	7	8	6	7
TGGGTCTCACCCTCCC	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
GTAGACGACAAACGGC	ref_5201_RC	116	51	143	162	56	118	57	131	71	109
GATGCGTCAAGGATTC	ref_5201_RC	228	107	260	239	125	190	120	200	100	190
CGAACCTCCGTATACA	ref_5201_RC	6	10	8	8	6	9	5	8	6	4
TTACCATTTGCCGTAT	ref_5201_RC	19	15	16	13	16	7	14	21	12	9
CGCCCAGTTTATCTCC	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
CTTGTCAAGATATTTT	ref_5201_RC	223	128	285	240	117	225	139	256	135	226
GACGGTCGTTGGGCAT	ref_5201_RC	2	12	8	6	10	5	14	5	16	5
AAGATTTACGATCCAT	ref_5201_RC	187	85	222	195	110	185	96	195	99	173
CCGGTACCTGCTACAA	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
TTGGTAACATGCACCC	ref_5201_RC	157	90	190	141	74	133	95	139	87	114
CCTTCTTTGTAAATTC	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
GCATCTTCATTTCTAT	ref_5201_RC	7	2	7	1	4	2	2	6	0	4
CTTTAATGGAATTCCA	ref_5201_RC	1014	607	1269	1150	612	1011	629	1061	634	973
CATCTTTGTGTTGGTG	ref_5201_RC	22	11	23	18	11	12	10	14	12	13
TCGAATCGTCACGTGA	ref_5201_RC	227	143	251	212	117	239	110	201	142	200
TAGGAGCAACAATGTA	ref_5201_RC	8	4	5	5	2	2	0	4	1	5
CCATTAAGTGGCGATG	ref_5201_RC	56	38	69	58	53	51	42	68	39	61
TCGGTATCGTTCGTTA	ref_5201_RC	116	68	132	107	92	87	88	94	82	98
GTTCAGTATAAATAGC	ref_5201_RC	52	30	59	47	39	51	27	48	35	36
TTGTGGGCTTCGGATG	ref_5201_RC	28	10	26	24	9	14	13	26	15	20
GTAAGCCGCCTGAGGT	ref_5201_RC	132	62	147	130	85	111	98	123	87	132
CTTTTGGCTCCAAATG	ref_5201_RC	10	7	22	21	4	14	12	16	8	11
TCACTATTCGATTATG	ref_5201_RC	22	13	32	29	19	18	15	29	18	31
TTAAAACCTGGGACTG	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
ACTGGACGACATTGTC	ref_5201_RC	23	17	22	29	19	15	15	16	16	23
GTTTACCAGAAATTGA	ref_5201_RC	13	11	21	18	10	18	7	14	11	10
TGTTAAACGGATATTG	ref_5201_RC	162	86	170	168	99	127	77	123	104	134
TAGACAGTTTCACATT	ref_5201_RC	59	28	59	65	25	49	21	55	34	50
TCCTTGCAACTTCGTA	ref_5201_RC	25	7	21	19	5	15	14	8	9	17
TTTGTGCTTTGCATCC	ref_5201_RC	111	84	165	95	59	113	92	108	89	103
AGTTTCTGCAAACGCC	ref_5201_RC	197	124	262	261	117	207	122	200	127	196
TGCTCTTTACAGGAAA	ref_5201_RC	203	94	294	202	128	206	127	225	133	177
ATGGTCTGGCCGACCA	ref_5201_RC	35	21	42	35	21	35	17	25	11	21
TCCACCGTTCTGACTT	ref_5201_RC	129	84	142	127	72	105	73	142	79	116
AAGACTACCGTATTTA	ref_5201_RC	38	17	32	28	21	34	18	33	8	23
TGTCGTATCCGAATTC	ref_5201_RC	116	92	150	140	82	139	79	105	80	124
GAAATATGCCTGCTAA	ref_5201_RC	28	12	24	13	16	20	16	26	10	14
TACCGCGTAGTGTTAC	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
TGACTCACCTCGAGAC	ref_5201_RC	2	5	4	0	2	2	5	3	1	3
GCCAGTGGCAAACCAT	ref_5201_RC	0	2	0	0	4	3	3	1	2	1
TCTCACCGGCATGTCA	ref_5201_RC	43	21	45	33	17	35	18	34	20	20
TTGTTAGGGCGAACGG	ref_5201_RC	13	12	18	16	5	15	10	14	15	12
TGAGTATCCGGTATTA	ref_5201_RC	165	119	250	201	111	206	103	200	113	177
GCATTCGGGAAATTAC	ref_5201_RC	118	75	168	153	76	113	87	129	83	107
GAAGATCGTACTTGAA	ref_5201_RC	18	11	22	28	8	21	11	16	9	12
ACCTGTCCGCTCATCT	ref_5201_RC	35	40	58	62	35	49	38	58	54	37
CACGTTATGAAGGGAC	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
TCTACACAGGGCCACG	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
TCCTTCGTGGGTTGTT	ref_5201_RC	27	18	36	39	10	21	18	37	17	23
GCCGGCTTTGCAAATC	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGGGGTCTGCCA	ref_5201_RC	46	21	67	38	25	48	27	49	33	57
GTCTCGCGAATAGACA	ref_5201_RC	106	54	144	158	64	128	76	102	77	86
CGACCCTAGAGGGTTT	ref_5201_RC	161	123	204	174	133	178	137	157	132	140
ACCTGCGGTGTGTTGG	ref_5201_RC	84	74	121	121	73	84	88	93	73	75
CATTCAGCGATTGTCA	ref_5201_RC	0	0	0	0	0	0	0	0	0	0
TCATCGAGGTGAATGT	ref_5201_RC	24	13	21	15	14	10	10	15	13	21
CATCATCTGTCACGAT	ref_5201_RC	57	70	87	81	83	42	69	76	86	56
TATTTCGTTCCCAAGG	ref_5201_RC	33	20	39	34	20	33	14	51	19	29
CTTCCGCTCAACACAC	ref_5201_RC	65	46	100	74	32	51	50	59	60	49
TTTGGTCCGCTCTTTT	ref_5201_RC	17	14	24	15	8	25	8	11	9	9
ATATTTAGCTTGATGT	alt_3238_upstream	16	14	8	18	23	13	23	6	20	5
GTTACGGCGTTTTGAT	alt_3238_upstream	44	58	41	33	54	46	49	32	58	40
CAATGTTGATAACTCG	alt_3238_upstream	35	54	49	51	60	22	59	27	64	32
TTATGCGTGTTGATTC	alt_3238_upstream	7	9	7	10	10	7	11	13	21	5
CCAGTGTGGGTGCTGA	alt_3238_upstream	7	15	7	6	24	6	19	5	13	7
ACAGTTCTTTGCTTAT	alt_3238_upstream	7	15	8	6	23	13	14	9	16	11
TCAGTTCCGGTTAATA	alt_3238_upstream	5	3	7	5	3	5	10	8	5	8
ACTGATCGGATAACCG	alt_3238_upstream	34	39	21	35	56	32	52	35	61	34
ACCACGCCTTGTTACC	alt_3238_upstream	15	28	19	18	35	7	31	8	37	13
GGATCGGCTGGTGCAC	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTAATCATGGGTC	alt_3238_upstream	12	23	15	20	17	17	29	17	39	15
ACTATATATACTGCTG	alt_3238_upstream	20	44	37	31	65	32	63	27	53	26
TCCGCTTGGGACCTTC	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCGACTAGCGTTT	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
GATTAATCAGGTCTAC	alt_3238_upstream	24	34	18	31	39	29	42	14	38	33
CATAAGATGGTAGCGT	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCCGTGGGTCAT	alt_3238_upstream	3	11	7	4	12	3	9	5	14	1
TTTCACGCCCATGGTT	alt_3238_upstream	17	32	21	8	34	10	23	15	20	13
CTGTACAATGCGTTTG	alt_3238_upstream	17	17	11	15	22	16	10	9	26	20
CCCATTTGCATTGTGT	alt_3238_upstream	45	97	33	45	97	37	91	52	94	34
GGTCACCTTGAAGTTG	alt_3238_upstream	3	9	5	2	12	5	8	6	8	6
CACTTGTGACGGGCGG	alt_3238_upstream	9	4	20	16	6	10	9	15	9	10
TTTCTGGATTTTCTAC	alt_3238_upstream	16	21	17	9	21	10	24	9	20	1
ACAATCAATTTGCTGT	alt_3238_upstream	13	25	19	9	32	9	37	16	35	19
GTAATCAGAGAGCCAA	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
GACTCTCCGGACGGGG	ref_3238_upstream	0	0	1	0	0	0	0	0	0	0
AACGTAAGATCCTACA	alt_3238_upstream	40	36	39	32	44	27	45	26	21	32
GGCCTTTTCCCCCGCA	alt_3238_upstream	4	6	3	0	4	1	1	1	3	2
GATAGTTGTTAAAGGA	alt_3238_upstream	101	208	153	114	193	133	190	103	209	112
CCATTCCGTTATCCGT	alt_3238_upstream	6	16	9	10	15	6	20	6	12	6
CGAGCTGCGGTACGGG	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
TTATATTCTGCGAGAG	alt_3238_upstream	15	23	18	10	25	15	36	18	29	17
AGGGCATATAGTATGA	alt_3238_upstream	12	14	9	6	14	12	17	11	15	6
GTGCATCTTTGACTCG	alt_3238_upstream	15	19	24	10	37	10	23	16	32	17
GTCAAAGTCGTGGACC	alt_3238_upstream	15	36	29	17	35	27	33	17	28	16
TTTTTGCTGCTGGTCA	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
ATTATCGCCACGAGCA	alt_3238_upstream	22	20	20	20	30	16	34	21	30	18
TCCGGTTACTGGCCTG	alt_3238_upstream	7	25	12	8	11	4	25	8	18	7
CAGGAGAGATTGCTTA	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTTCTTTGTGTCC	alt_3238_upstream	12	24	14	16	9	16	23	13	34	21
TATTGATTCTCGCACG	alt_3238_upstream	178	248	168	149	244	174	262	161	272	155
CCGCCGAGAAACCACT	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
TCTGGAAGCCATATAG	alt_3238_upstream	15	13	12	13	15	11	11	12	13	4
GCTCGGAGCGTGGCTT	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCTCTGCTCAGGG	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
TCACTGTGATACGCTA	alt_3238_upstream	7	11	7	6	12	4	6	3	9	2
ACAACCGGTTCCAGTA	alt_3238_upstream	3	2	1	0	2	2	1	4	3	0
TGCAGCGCCTCTTTGG	alt_3238_upstream	4	2	3	4	2	2	4	5	9	6
GACTACATGGCGTTCA	alt_3238_upstream	11	15	20	11	21	14	17	9	15	12
CTTTCGGAAATTTGTT	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGCTCTTATGTTA	alt_3238_upstream	10	13	12	5	17	3	21	5	14	11
TCGCGCGAAGATTGGG	alt_3238_upstream	17	19	20	30	28	26	38	19	31	12
GAGACACCTTCCGAGC	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAGCTACGGGGAA	alt_3238_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTGACTGTCCTGT	alt_1851_fdr	57	53	53	55	51	45	67	58	59	38
GGGGGCCTTACGTCCT	alt_1851_fdr	0	1	2	8	6	1	3	2	0	7
CTCGGAGGTAAGTTCT	alt_1851_fdr	25	31	42	40	31	33	25	22	26	27
CGGGCTAAATTATAGA	alt_1851_fdr	52	37	50	33	27	40	39	32	58	25
TAATATGAGAATTCTA	alt_1851_fdr	36	18	37	32	26	19	28	21	17	27
GTTGGGGTTGATGTTC	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTCCATAATGTAC	alt_1851_fdr	9	11	23	15	16	10	11	14	20	10
GACCTGATATTTTTTA	alt_1851_fdr	20	17	37	18	22	16	21	22	22	16
GGCATTTTGCATTAAA	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGGATATGTCAGT	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTAGTTGTTGCAG	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
CCCATGGGCATACATT	alt_1851_fdr	19	22	32	29	32	27	23	23	27	28
AACTTGTCCAGAACAG	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTTGAAATGACCC	alt_1851_fdr	23	19	43	38	31	38	26	30	30	33
CAGGATTTTCCTGGTT	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
AATCTAGTGTTCCCGA	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
ACGACGTAGCTCATAA	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCAGTCACTGCAA	alt_1851_fdr	18	30	36	31	26	24	33	24	22	16
ACCTCGAGGCCTTATA	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTTAGTGATTACC	alt_1851_fdr	23	14	21	27	25	12	33	16	16	12
AAAAGTGGGGCAATGG	alt_1851_fdr	51	25	51	36	39	54	34	42	43	36
TCAGGTGATTGCTATC	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTTTTGTTTGGTC	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
AATCATTGAAGCAGTG	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
TACGGGATATGCTGTC	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCCCTGTAGTTTG	alt_1851_fdr	6	4	8	0	1	1	7	6	11	5
GAATGACATTTCCTTG	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGATCATTATTGA	ref_1851_fdr	81	50	99	68	69	79	63	50	68	56
ATAGTGTCTGGTTTAT	alt_1851_fdr	9	6	8	10	13	6	5	8	7	12
GGATTGTCTCATCAGG	alt_1851_fdr	76	58	79	61	40	63	64	55	51	67
GGCGAATTCGCATCTT	alt_1851_fdr	25	28	31	31	24	33	31	24	35	35
TGAATAGATTTCACGC	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTGTTACGTTCTA	alt_1851_fdr	24	15	32	19	15	27	14	7	14	23
TTGCGTTAATGTTCCC	alt_1851_fdr	45	34	40	33	27	26	30	44	31	28
ATAAAATGCATACGTG	alt_1851_fdr	8	13	7	10	7	7	7	11	10	10
AAAAATGGTAACTCCG	alt_1851_fdr	115	74	159	99	81	111	93	88	74	97
TACGACTGCTACAGAG	alt_1851_fdr	89	73	103	73	82	79	78	72	77	56
GGTAATACAAGTCTTT	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
TGGACATTATATGACC	alt_1851_fdr	5	3	4	7	3	4	4	3	10	0
TCCCCGCCATTCCATA	alt_1851_fdr	2	1	3	1	5	1	1	0	2	7
TCCTTGGAGCAGTTTT	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAGGTTGCGCCGA	alt_1851_fdr	91	67	108	75	60	63	70	73	70	66
TTCAATTAATGCGCTA	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
GGATTTAACGCATCCC	alt_1851_fdr	25	29	24	23	26	15	33	29	31	22
CGTTGTCAGATTACGT	alt_1851_fdr	25	19	45	36	18	30	36	31	22	36
TCTGGCCAATAGTTAC	alt_1851_fdr	20	58	60	38	63	47	41	47	48	44
CCCATAAACCTTCCGT	alt_1851_fdr	32	19	19	33	25	27	43	20	26	27
ACTCCCGGACGGGAAT	alt_1851_fdr	21	14	21	12	22	16	8	23	17	9
CTAACCTGGCTACCTT	alt_1851_fdr	59	71	85	60	53	61	62	65	61	54
TCTTGTGTATGTCGTC	alt_1851_fdr	9	13	8	6	10	5	14	8	14	1
CCTTACAGCCCCTGGC	alt_1851_fdr	28	34	41	20	41	25	38	38	34	24
CTCTTTTAATCGTGGA	alt_1851_fdr	42	34	53	60	42	52	40	42	46	48
CCTTAGATTCTACGGA	alt_1851_fdr	23	37	31	28	48	25	32	37	42	26
TATCTAGTGTTCCCGA	alt_1851_fdr	96	135	105	95	166	89	179	84	189	90
CTGCTGATTCCTGTTC	alt_1851_fdr	38	41	48	38	37	33	41	41	27	35
GCGTCTGCTATGTACA	alt_1851_fdr	61	53	90	71	63	57	57	47	75	59
ATCACTATGAGGGGTT	alt_1851_fdr	33	17	39	34	30	23	30	32	34	30
ACCACGGCAACTTCGG	alt_1851_fdr	28	23	29	22	16	10	10	35	20	19
CCTCATTGAATTACTT	alt_1851_fdr	13	9	6	10	10	6	10	2	5	4
CTAAGTTGTAACCGTA	alt_1851_fdr	3	12	5	4	11	8	6	4	9	2
TCTTGCTACAATGCTT	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
GGACGCCTATAAGTCA	alt_1851_fdr	0	0	0	0	0	0	0	1	0	0
CAAAGGTAGTTCGCGT	alt_1851_fdr	39	26	39	47	36	34	34	37	26	23
CGCTACGGGACTTAAT	alt_1851_fdr	20	22	22	27	13	18	18	19	30	15
GGTTATATAAATTACG	ref_1851_fdr	78	78	79	76	73	61	72	55	95	67
ATGAGAGAGGTCAATC	alt_1851_fdr	17	15	25	15	12	14	19	11	11	15
ATACTATGTCGTTCTT	alt_1851_fdr	14	9	24	33	12	12	19	19	13	19
ACAAATTTCCGTGCCC	alt_1851_fdr	19	23	18	19	22	21	30	27	10	18
CATCCGCTTGTATGTG	alt_1851_fdr	10	13	11	10	11	13	10	9	13	8
AGAATGCGTAACAACC	alt_1851_fdr	245	221	294	229	215	225	238	246	246	229
AGGTTGAACGTGACGC	alt_1851_fdr	92	87	112	103	98	100	89	100	98	60
GCATTCGAGCATCTGT	alt_1851_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTTTAATCGTTGC	alt_1851_fdr	11	8	25	9	12	6	9	12	7	14
CTGGAACATTGTCTAT	alt_1851_fdr	8	8	11	11	11	6	12	10	12	11
TTAAGACGTTTCGTGT	alt_1851_fdr	13	9	17	21	5	18	10	8	17	11
TGCTACAATAATAATT	alt_1851_fdr	4	2	9	5	1	5	5	3	3	4
ATGTTAACGTAAGACA	alt_1851_fdr	2	3	5	5	6	8	3	8	13	8
AGTCCGAACAGTGTTG	alt_1851_fdr	96	113	141	108	104	97	102	92	128	123
CCGAAGTTGAACAGGG	alt_1851_fdr	86	54	103	100	63	78	63	106	68	77
CTACCCGCCCTGTGTG	ref_1851_fdr	27	53	42	30	53	25	39	32	57	28
TATTATGCACATACAT	alt_1851_fdr	65	86	73	80	67	74	60	73	72	55
CAACCCTATCTCTTCA	alt_1851_fdr	41	31	43	37	37	26	44	33	64	35
TTAGGAAAGCAGGACT	alt_5971_new	22	21	22	16	21	27	22	24	13	16
TTCCGTGAAGCACTAT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
TGCTAAATACGTCGTG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CGGTCAATTAATGATC	alt_5971_new	5	5	2	7	8	3	3	0	1	1
ATGGTTCTATCGTCTC	alt_5971_new	16	9	29	16	15	23	11	27	22	13
TCTGAGTCTTTTTCGT	alt_5971_new	83	63	80	95	76	73	63	80	63	75
GTTGCCGCGGTTTTTA	alt_5971_new	78	62	97	77	67	78	60	63	60	71
TCGCTCATATCTGGTC	alt_5971_new	52	34	62	71	44	60	49	51	47	57
GGTCGGCCCCGCGCGT	alt_5971_new	2	7	8	6	9	5	4	4	8	5
TGGAATGAAGAACCAT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
ATCTGTCATGCGTTCG	alt_5971_new	202	203	264	229	206	206	213	216	191	205
GCAGACTCAATTCAAT	alt_5971_new	65	61	86	89	60	70	74	81	61	51
CGATGAAAGTGTTGTG	alt_5971_new	51	38	78	55	30	42	34	52	30	58
TCCACCGAGCATCCAT	alt_5971_new	55	41	74	57	43	52	36	54	42	55
TTTTAATATTCGCGCT	alt_5971_new	84	59	83	94	57	76	59	77	59	66
GTGGATCAATCGAAGA	alt_5971_new	33	27	40	41	25	36	21	40	36	37
CGAAGTTGCTCCTTAG	alt_5971_new	61	54	78	63	51	58	40	57	58	51
GTCGGGTGGAGATGGG	alt_5971_new	191	124	228	163	109	178	137	164	127	152
ACTTACTCTCCCGCGC	alt_5971_new	15	21	16	10	15	6	36	10	30	29
TCCATCGCCATGGTTT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
TAATAGTTCATCTCTC	alt_5971_new	91	79	123	95	70	93	81	95	81	94
CACTAACCATCGTCTT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CGTGGTGGATTATTCA	alt_5971_new	73	46	88	61	50	59	43	60	50	67
AACGTCAGTGTAATAT	alt_5971_new	8	10	12	11	18	8	5	13	16	11
CCATCTATGACTGTAG	alt_5971_new	106	111	107	98	96	96	117	70	122	87
GCTTATCCCTCCCATA	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GCCTCCTCCAACGACG	alt_5971_new	14	16	26	23	33	22	30	25	25	22
CATGGTACGGCAGGTT	alt_5971_new	106	62	129	121	57	100	95	113	77	81
CAGCACCTGGTCAAGT	alt_5971_new	37	35	62	53	45	37	31	28	53	51
TCATTGCGGCTGGGTT	alt_5971_new	85	69	117	98	77	88	88	68	92	76
GGCTGGCTGCCGTCTT	alt_5971_new	33	15	32	19	15	22	17	22	17	17
ACGTTAGTCATGTTTG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GCTTCGGTAATCTTTG	alt_5971_new	20	16	22	25	18	20	12	18	10	17
TCAGCGAAAAACTGAC	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GGGATCGAATCCGACC	alt_5971_new	437	334	549	491	284	409	354	416	352	401
CCGCTAGACGCTCGAT	alt_5971_new	3	0	0	1	0	1	1	0	0	2
TACTCATGCATGGATG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CTCCGTCTTCTGTTGT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GAGTTTTTATCTCCCG	alt_5971_new	11	8	7	4	6	10	2	5	7	5
GAACGATTATCGTGTT	alt_5971_new	34	30	46	46	41	40	34	50	21	36
ACATATATAGCATCAA	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CCGCCTGTACGCATTA	alt_5971_new	24	33	38	29	38	34	34	22	43	18
CTGGGCTTAATGATGT	alt_5971_new	4	2	5	1	3	4	4	2	1	6
CATATTTGTATTTTCT	alt_5971_new	50	21	60	65	27	51	28	48	24	39
TTCCCAGGTTAGGCTT	alt_5971_new	31	27	31	30	15	17	34	36	17	25
CTCGCATCATTGTAGG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GACTTTTCAGAGAGTG	alt_5971_new	109	80	122	122	82	100	107	101	99	95
TTGTAACTAGGGTACT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CCGTACACTTCAAGTA	alt_5971_new	29	31	42	46	31	40	38	41	42	33
ATTAGCGGTCTTTACA	alt_5971_new	5	3	8	3	7	2	3	9	2	7
AACGGGTGTTTACGTT	alt_5971_new	53	47	72	74	32	52	41	57	36	50
TTCGGTGGGTAGGCTC	alt_5971_new	59	46	61	60	42	55	35	67	35	51
TGGGAAGGCGTGGTGG	alt_5971_new	42	25	59	34	19	40	38	49	33	35
GGACTTTGAGTGCATT	alt_5971_new	139	113	171	131	131	125	157	133	149	111
GATGTAGTTGTTTCTT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GCCTTCGGGAGATAAG	alt_5971_new	105	96	114	116	77	115	85	99	77	118
TGTGCCTGTTTGCATT	alt_5971_new	11	5	17	14	8	16	9	13	10	14
GGCGGTTGTGATGAGG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
TAGGTCATGAACTTGG	alt_5971_new	47	28	37	28	43	32	32	29	17	29
TTATGCACTGTTTGCT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GTCTTTAATCAGCGAC	alt_5971_new	49	31	71	52	46	54	39	43	34	41
GGCAGTGATGGCCATA	alt_5971_new	27	27	34	30	19	30	21	32	13	26
CCGGCATTCGTACATT	alt_5971_new	84	64	112	78	66	80	75	80	85	75
ACATGGTAAGCTGGTT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GACCCTGTGGAGTTGG	alt_5971_new	21	17	32	19	13	17	20	20	9	22
TTACTTCGCCACGCGG	alt_5971_new	11	15	20	14	8	15	20	19	15	21
GCCGGGGCCGGTTTAA	alt_5971_new	118	85	134	123	95	107	99	93	91	103
GTACTGCCTGGTGCTA	alt_5971_new	49	52	60	56	37	58	42	64	41	41
TCCGAGCTTTTTTTAG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
AGAGGGCTCCGGAAGC	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GCGAACTAAATGTAAT	alt_5971_new	1	2	2	4	7	3	3	0	4	5
CACTTTTTAAGGATTC	alt_5971_new	48	31	43	53	49	46	43	48	40	62
AGGCCATCAGGCGTCC	alt_5971_new	27	21	20	16	13	15	24	16	25	16
GTGGCGTTTCCGTAGT	alt_5971_new	42	32	42	31	24	23	41	27	17	27
CTCGATTATCTATTCC	alt_5971_new	5	10	19	6	8	17	12	5	15	4
CCCCCACGGCCGCCCC	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CGGCTGTTCCTCAACC	alt_5971_new	14	15	14	13	8	9	14	19	15	5
CGTATTTGACTCATGT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
TTCCCTACTCTTCCAG	alt_5971_new	64	26	61	61	48	55	51	51	54	38
CCTTGTTGTAGGCTAC	alt_5971_new	82	47	115	72	78	77	63	84	68	76
GGGATCGAATCCGCCC	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GTGCGGCAGAGCTGGA	alt_5971_new	233	163	260	208	188	191	178	222	194	159
ATTTGACAACTTTAGG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
TCCGAGCTTTTTTTTA	alt_5971_new	65	83	88	89	67	47	77	79	65	48
AGCTTCTTTTTCTCCC	alt_5971_new	145	100	215	137	106	176	111	163	98	159
TGATATCTTGCTAGAA	alt_5971_new	0	0	0	0	0	0	0	0	0	0
TCGTTTCCGGAGTCTG	alt_5971_new	496	380	624	541	412	482	462	480	445	440
TAATCCCCGCGATCTT	alt_5971_new	9	17	8	5	16	1	25	11	33	2
TCTATCTACTTTTTTG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
ACCGTTGTTGGAATGG	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GCTTGCACCATCTATA	alt_5971_new	99	91	101	107	80	91	91	116	98	93
ATTTGATAGTAAGTTA	alt_5971_new	80	62	108	112	58	103	80	83	89	96
CTACTGCTTTGAACTT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CCAATGATTACATCCC	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GATCTATGGGAGGACA	alt_5971_new	112	58	127	115	105	85	103	96	84	80
CATTAACCCAGCATTT	alt_5971_new	28	26	47	21	24	42	20	25	25	26
TGACACTCAACCGGGC	alt_5971_new	33	25	45	31	33	33	32	25	42	31
ATAAGTAACGCTTAAG	alt_5971_new	58	39	53	28	33	33	30	58	47	43
ACTCTACGGTCCGTTC	alt_5971_new	32	36	31	21	33	25	38	29	31	23
TGTATCTTAGCTGCTG	alt_5971_new	29	15	23	27	24	21	34	21	31	27
GTACCATATTTGGTTG	alt_5971_new	96	64	104	94	74	102	74	94	65	71
TGCATTGAGGTGTTGC	alt_5971_new	0	0	0	0	0	0	0	0	0	0
GCGGTTCTGGATTGGT	alt_5971_new	16	19	34	17	28	16	17	15	26	21
TCGAAGTCGTGATCTA	alt_5971_new	0	0	0	0	0	0	0	0	0	0
AGGAACCCTCCTGTAG	alt_5971_new	24	11	21	24	16	18	8	26	20	8
TGGGGATAATGTTTTC	alt_5971_new	77	39	96	57	43	64	52	66	60	52
TATCTAGGCTCATGGT	alt_5971_new	1	3	5	5	1	5	4	2	5	4
TACCTAAGAAGATACG	alt_5971_new	81	65	74	109	78	95	83	73	56	92
TAGTTCAGGCATCTAT	alt_5971_new	585	549	756	644	566	601	579	567	616	558
CTACTTGTTACAGCTT	alt_5971_new	27	26	49	26	23	36	22	39	33	24
CCAGTGGGCGGCAGTT	alt_5971_new	0	0	2	1	0	0	1	0	2	0
CTTTTGTATATGAGAG	alt_5971_new	6	9	10	11	3	5	7	9	7	6
TATTTGTAATTTCGCC	alt_5971_new	88	69	95	77	66	91	48	69	67	95
CTGGGTGATACACATG	alt_5971_new	18	12	35	27	17	27	24	24	26	19
CCCATAAACGGGGGTC	alt_5971_new	5	6	9	5	5	5	5	8	3	6
TGTCTGAATGTGCTGA	alt_5971_new	0	0	0	0	0	0	0	0	0	0
AGCGGATAATTGGACT	alt_5971_new	65	36	71	50	41	74	57	69	51	41
CATTTCTATGCCTTTG	alt_5971_new	383	255	517	437	273	369	311	399	269	324
TACAGGGGTTCGGGAG	alt_5971_new	44	39	77	55	36	42	40	53	44	39
ATTCCGCTGTAAAGAT	alt_5971_new	93	75	128	114	100	103	82	77	99	90
TATTCTACGGTCACGA	alt_5971_new	0	0	0	0	0	0	0	0	0	0
CCTGAGTTTGGAGCAT	alt_5971_new	142	148	145	162	105	115	132	126	110	124
AGTTAAGTTCAAGTCT	alt_5971_new	16	16	18	24	18	23	15	18	18	19
ATTGTTACATCCTCTC	alt_5971_new	112	77	142	100	87	108	82	110	87	88
CAACATGATCCTGCCC	alt_5971_new	16	14	16	17	7	7	7	5	5	20
GATTCGTTGGTTCGTT	alt_5971_new	0	0	0	0	0	0	0	0	0	0
ACGTGAGTGATAGTTA	alt_5971_new	0	0	0	0	0	0	0	0	0	0
AGTGCGCGAACCTGGG	alt_5971_new	6	6	9	4	13	6	7	9	1	7
ATTCAAAGTCTTTCTA	alt_6117_new	13	18	8	13	11	12	16	17	28	18
GCTTTGGACCTCTAAA	alt_6117_new	22	33	35	30	35	22	37	19	32	26
GCTTGCGTTCTGGTAG	alt_6117_new	2	13	3	0	2	9	4	1	2	2
CCTCCACCAACAAATT	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GTTTGATACCAACGCA	alt_6117_new	85	135	123	107	144	82	161	101	148	77
TATTATACCGCTGGCG	alt_6117_new	13	20	12	15	18	11	26	13	28	13
CCTGCTCTCAAGGCCA	alt_6117_new	1	5	0	3	2	1	1	0	11	2
TTTTGTTTGAGACTTA	alt_6117_new	7	20	9	17	13	15	20	6	13	7
CAGAAGTCGTTCGGTC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TGGATCATCTTCGACT	alt_6117_new	10	17	18	15	23	12	24	13	18	25
TTTTCGTCCGGAATCT	alt_6117_new	14	26	20	20	14	18	30	18	26	13
AGACACTTTGGATTGC	alt_6117_new	4	5	3	5	5	4	3	5	4	2
TAGGGGGGTGCGCTCC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GATATTAGCTGATCCT	alt_6117_new	13	2	5	5	7	6	11	4	5	7
ACACCAATGGAACGGG	alt_6117_new	47	75	90	54	77	58	92	64	99	52
TGGCGGCGTGACGGAT	alt_6117_new	0	0	0	0	0	0	0	0	0	0
AGGACATTTTAGTTAG	alt_6117_new	5	9	6	5	7	7	8	7	5	4
AAGGGATAATTACCGA	ref_6117_new	42	71	47	36	58	36	71	38	73	36
TGGGGTAGGGCTTTTT	alt_6117_new	20	17	23	16	12	23	21	14	27	11
ATGGACCTATAACGAT	alt_6117_new	31	49	29	24	64	26	40	22	35	18
ATAGGATCTCGAGTTA	alt_6117_new	54	97	71	85	124	50	82	73	106	52
AAGGTCCGGTCAGCCG	alt_6117_new	11	26	9	12	22	13	37	13	22	6
TTTTTTAGAACGTGGT	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TCTCGTAACGCTGACC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GTTTTTCATCTTTAGG	alt_6117_new	25	27	21	23	35	19	29	18	23	16
GCACATCTCCTGTCCC	alt_6117_new	12	24	9	9	25	10	29	5	20	14
CCAACATTGGAGCTTA	alt_6117_new	6	14	0	3	16	0	14	4	16	2
CGCCCGCAGCCCGCGG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
ACATGCCATTTTTGCT	ref_6117_new	60	76	63	58	95	46	91	55	96	54
AATCGGTGAGCCGTGG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TTATACGCTCAATACG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TAGCATAGATCCAATG	alt_6117_new	40	61	41	40	41	35	47	32	64	28
TGGATATGGTCCATAC	alt_6117_new	88	184	143	113	181	95	179	109	162	90
CAGAGGGTACTGCTTA	alt_6117_new	14	20	12	17	21	8	14	11	26	6
CCGCCTGATATGCGGA	alt_6117_new	9	20	11	8	13	11	12	11	19	13
TTCTGATAGAGTCCGC	alt_6117_new	14	22	21	15	12	11	16	19	23	14
GCGAAGGAGCAGAATG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CCACTACCTTTGAACG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GTTGCGTAAGCACATT	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CGCGAAGACAAGGTTT	alt_6117_new	30	45	40	31	35	29	55	30	45	27
TTATCTATTTTCACGC	alt_6117_new	1	10	6	11	7	2	9	3	5	2
TTGGGCGAAGCTGTTT	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TGTGTCTTCATATATA	alt_6117_new	32	39	55	39	44	34	49	40	53	27
AGCTCTTGTTCAATGT	alt_6117_new	7	21	12	13	18	7	16	5	7	7
CTATGGACCTGCCTTG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTTCGACACGC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TCACTACGAAACGCGG	alt_6117_new	12	10	6	11	12	10	31	17	19	6
TAAGCCTTTATGTATT	alt_6117_new	2	4	6	2	8	0	7	0	11	3
CCATGTGCTGAGTCCA	alt_6117_new	10	8	13	8	12	12	7	4	15	4
CCTGTCCGTTCCTTTA	alt_6117_new	5	5	3	1	6	8	6	6	11	5
GTCTAGGGCTTGCATT	alt_6117_new	20	43	40	20	69	27	50	25	59	23
GGATGCGTAATGGTTT	ref_6117_new	37	48	47	37	50	44	66	40	69	39
TGGTAGTTAGATAAAA	alt_6117_new	15	20	20	14	20	15	21	12	22	16
TTGATGTCAAGTTGCC	alt_6117_new	15	16	17	11	18	16	19	12	20	11
TCCATAGTAACACGGT	alt_6117_new	24	82	45	55	89	36	69	38	74	33
AATCGTTTACATTTGG	alt_6117_new	15	23	19	14	32	14	32	15	33	16
TGTCTCTCTCGGATCA	alt_6117_new	12	18	18	6	12	13	26	18	20	8
GGTGCACCTTTCCGGA	alt_6117_new	5	10	4	3	10	6	14	5	19	3
AGACTTTGGAAACCAT	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CTTCACGTCAGCTATT	alt_6117_new	15	29	27	32	34	30	37	29	48	22
ATTTTTGTGAAAGTAC	alt_6117_new	28	35	25	20	30	28	23	27	34	21
ATTCCTGCTTTGCTCC	alt_6117_new	6	5	5	3	6	9	5	5	5	1
AAAACCTTGAGTAAAT	alt_6117_new	0	0	0	0	0	0	0	1	0	0
GTATGGGCTTGTCTCC	alt_6117_new	0	7	6	0	6	5	3	7	7	8
CGATCCCCGATCTGCA	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TCTTGCTTTGCCTGAG	alt_6117_new	9	15	5	6	8	5	5	13	10	8
TTCGCAACGCGCCACG	alt_6117_new	4	4	1	3	5	4	6	4	9	3
TCTATATCTCATCTGT	alt_6117_new	40	43	57	44	56	48	44	27	62	30
CCGCGGGTTTCTATTG	alt_6117_new	1	3	1	7	1	4	1	1	6	3
GGCGCAGAGTATTTGT	alt_6117_new	9	14	16	10	12	9	12	12	11	5
CTGCCCATGTCGCCAC	alt_6117_new	10	10	6	6	22	5	14	1	25	8
ATGCCACGGCTCCACT	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GGTTACGGGTCCGCTC	alt_6117_new	14	19	10	4	15	7	13	7	13	4
CCAGTTTTTACCGTGG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CCCCATCACTACTCCG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GTTAGGTACTATATAT	alt_6117_new	15	22	30	19	37	27	30	28	45	22
GTGAAGCCGTCCTTGG	alt_6117_new	9	17	10	9	25	8	13	18	12	16
TGGGTCATGCTTGATC	alt_6117_new	29	25	26	22	21	30	31	19	32	18
TATGCGTACTGACGGC	alt_6117_new	4	3	4	1	8	3	3	0	4	7
AACATACCACGTCCGG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GGACGTTACCACATGA	alt_6117_new	55	62	68	55	80	54	85	61	66	56
TAAACCTTGAGTAAAT	alt_6117_new	161	200	175	135	231	132	158	135	192	122
AATATCCAACTTACCG	alt_6117_new	2	6	0	2	11	3	7	0	5	0
GGCATGTGGGTCCCCA	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GTATCTCGTATGGGTC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CTTCCGTTATGGGTTA	alt_6117_new	182	227	200	173	265	167	256	143	245	160
GGTGTCCTTGAGTTGC	alt_6117_new	3	3	2	1	2	1	1	6	1	3
TGGATGGTTTGTTATC	alt_6117_new	74	109	92	72	114	84	116	75	112	58
TGGGCTATCATATAAA	alt_6117_new	8	7	8	2	7	4	6	7	4	4
TTGTTCTGGCTATCAG	alt_6117_new	14	14	20	9	19	8	25	14	28	7
GGGCAGGGCCCTGGTA	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CACGGGATGTCCGCCT	alt_6117_new	59	87	99	83	89	66	101	86	90	69
CCGGTTCAGACTGTCG	alt_6117_new	5	44	7	8	57	5	38	3	27	5
TAATCAGCTATACATT	alt_6117_new	9	5	4	10	5	6	8	2	9	3
TGTGTGCTTTCCTTGC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CCTAGTGTCGATTCGG	alt_6117_new	4	1	1	0	2	0	1	4	2	2
TCTGGGACAATACCGA	alt_6117_new	0	4	1	2	5	2	3	1	7	1
ATTCAGAGCAGGAGCC	alt_6117_new	49	48	54	42	54	39	68	40	53	29
TTCATGTCTCAATTTA	alt_6117_new	16	32	45	26	39	25	35	22	25	19
TGTTACCCTCGAGGAA	alt_6117_new	48	65	53	49	63	28	82	36	84	27
ATAGATCCGTACTGGC	alt_6117_new	20	17	29	12	25	18	25	19	35	19
CCTCCGGGTGCTATTC	alt_6117_new	5	28	11	6	22	6	32	10	33	9
TTTTCATACGTTACCT	alt_6117_new	1	7	0	4	9	0	7	0	4	2
ATACGACATATTCACG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TGCCGTCCTCCCATGG	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CCTATTCAGGAGGGTG	ref_6117_new	31	53	26	35	55	26	51	30	52	26
AGTCGTGTTAGGGCAG	alt_6117_new	13	14	14	14	19	19	28	9	20	14
ACAGGTTTATTATTGC	alt_6117_new	25	35	34	20	34	21	27	21	39	21
TCGGCGCTTTCGTCAA	alt_6117_new	0	0	0	0	0	0	0	0	0	0
AGTTTAGCTTTTCGCG	alt_6117_new	19	29	31	21	22	22	26	8	24	21
TTTGTCACGTTTGTGT	alt_6117_new	11	13	17	11	16	7	12	7	19	6
ACTACATATCCGCGAA	alt_6117_new	0	0	0	0	0	0	0	0	0	0
GGCTTAAGGGATGAGA	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TTAATAGGTGATGCAC	alt_6117_new	5	11	5	2	7	5	7	5	18	5
ATCCGGGAATATTGTA	alt_6117_new	14	28	25	14	15	15	19	7	14	13
AGCAACGTGTGGTGCA	alt_6117_new	1	3	1	1	1	1	6	2	1	3
ATAATGTCCATGGGCC	alt_6117_new	15	37	32	27	24	17	35	25	22	20
TGCTCATCGACGCACC	alt_6117_new	32	68	58	43	63	38	52	40	60	31
TTAGTACGGCTTGTAC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TATATGTTGGTCTGTG	alt_6117_new	18	20	12	7	16	14	19	6	15	20
AACGCTGTAAGTTCCT	alt_6117_new	24	29	23	16	31	11	40	21	25	18
TCACAGTAGGTTTCAT	alt_6117_new	1	3	1	0	2	1	1	0	0	0
ACCCCTCGACAATAGA	alt_6117_new	0	0	0	0	0	0	0	0	0	0
TCTGTCCCATTGAGCC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CCACCGCCTTTTCCCT	alt_6117_new	21	34	30	36	19	28	31	16	26	25
CTCGCTCATAGATTTG	alt_6117_new	7	12	14	6	16	6	15	7	12	4
CTGTGTCAGAGATCGT	alt_6117_new	34	18	34	22	39	26	25	19	35	24
TGACGACTTCCACGAT	alt_6117_new	18	32	35	21	16	15	29	20	29	18
CCCGCCTTTGTGATTC	alt_6117_new	21	49	25	22	38	17	40	15	51	18
CCTACATACTTGTTGC	alt_6117_new	0	0	0	0	0	0	0	0	0	0
CTGTCCCGTGCTCAAA	alt_6117_new	1	1	3	1	0	3	3	1	2	1
GACATGGGGAAACACA	alt_6117_new	20	33	19	17	25	14	41	20	26	19
TGGCCCATGGGGAGAT	alt_6117_new	36	45	34	19	55	31	47	39	60	27
TATCACACAATGGGTG	alt_6117_new	33	41	41	27	38	23	42	30	39	37
AGATATAAGCATATTG	ref_5861_new	94	114	109	106	122	82	116	77	114	71
GAAAGCGATTGTATGT	ref_5861_new	58	53	70	44	48	51	63	44	53	40
GCTTGTACGCACGAGG	ref_5861_new	6	12	20	10	13	6	13	5	14	3
GCCACGCATCGGCCAC	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TCTCCAGAGTTATCAT	ref_5861_new	33	34	49	26	25	27	33	24	44	17
CGGTTGAAAGCGTCGG	ref_5861_new	128	55	156	152	71	142	72	127	68	146
GAAACAACGTAAATTC	ref_5861_new	0	0	0	0	0	0	0	0	0	0
GCCGCCGAGATGCACA	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TTAGTTAACAGTGGGC	ref_5861_new	36	61	46	38	75	56	58	53	71	48
CTCGGTTCTTTATTAT	ref_5861_new	34	48	45	39	42	29	39	26	46	30
GGTCAAATGCACTGGC	ref_5861_new	38	40	40	34	50	36	31	35	37	32
ATCTCGACCGTGGTCC	ref_5861_new	27	42	31	25	38	27	45	26	38	25
ACATCGCTCTAAAGCT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TCGGTAATGGGACTTG	ref_5861_new	14	25	16	16	18	18	21	12	24	16
TAGTCTGTACTTCTGT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
GTAGTCTATTCGGTAA	ref_5861_new	14	14	10	7	8	9	7	5	6	10
GGACTACGACTCCGAG	ref_5861_new	19	16	32	28	34	13	33	11	25	27
GCACATGGATTTAATG	ref_5861_new	17	22	15	27	38	24	43	19	38	15
ACACACGGATTCTGCC	ref_5861_new	71	56	67	59	60	54	78	52	82	50
TCTGATGTGAGATTCG	ref_5861_new	5	4	2	3	11	3	2	5	9	2
TCCACCAGCGTCGGGT	ref_5861_new	6	11	14	15	10	12	19	7	8	17
CTATTTAGGGCGTTTT	ref_5861_new	6	11	9	12	14	5	13	13	23	4
CCACTGAACCCGGAAC	ref_5861_new	23	17	22	16	27	15	27	15	25	23
TGCGCGGTTGGGTATC	ref_5861_new	15	32	24	13	13	17	18	17	20	17
GTCGCAATAATAACTT	ref_5861_new	4	5	9	6	6	5	3	1	9	3
CTTGAGGCCTAATCAT	ref_5861_new	36	27	22	28	39	28	31	17	33	21
TTGGAATTATGGGGCG	ref_5861_new	19	18	22	13	20	15	13	5	14	17
GCCCGATCACTCAGCT	ref_5861_new	7	3	5	4	9	3	7	3	10	3
CTTAATGATCTCGTGG	ref_5861_new	55	55	64	79	72	56	58	55	61	62
TATCGTTCAGTGGTGG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
GGCGCGTTCCGGGAAA	ref_5861_new	13	11	17	16	10	12	19	11	19	13
GTTCTGTTTATTGGTT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
AGTTCTATCGCTCTTG	ref_5861_new	31	39	35	22	46	15	44	30	32	22
ATAAAGGAAAAATAGA	ref_5861_new	40	43	43	48	44	32	35	54	45	35
CATAGTTTCATCCGAC	ref_5861_new	3	12	9	8	13	8	16	4	9	3
CTGCATACGAGCCTCT	ref_5861_new	39	61	57	51	74	40	67	39	87	55
TCTTACTTATTTGGCT	ref_5861_new	20	17	19	29	21	18	26	19	29	15
TTTGGCCGGCGTTTAG	ref_5861_new	39	46	54	38	38	26	38	25	41	27
TAGGTTCTACCTAGTT	ref_5861_new	47	63	50	50	64	49	75	34	71	33
AACCCTAGGGTCGTGT	ref_5861_new	69	97	93	71	99	68	92	58	106	63
CTCTGTATAAATGTGG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
CTTTCTTTGCCGGCCG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
CTTGCCGAGGTCGCAA	ref_5861_new	27	18	37	40	25	18	37	26	41	29
GTACAGGTGCACCATT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TCAGGAACTCTCAAAA	ref_5861_new	49	55	47	46	53	29	68	45	62	42
ACCCCCCCCTATATGC	ref_5861_new	4	50	4	8	52	8	57	4	51	1
AACGGGAGTAGGAATG	ref_5861_new	37	38	46	25	48	34	46	28	55	33
TAAAATCCGCCGCTCG	ref_5861_new	11	11	7	5	11	7	13	5	1	3
GTCCCCTTGTTTGTTT	ref_5861_new	28	19	28	21	27	22	29	19	29	6
CGTTCGCTCGCCCCAT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TATTATCAAGTCGTGC	ref_5861_new	1	9	1	5	5	3	4	1	10	2
ACTATCTCGGTCCCCG	ref_5861_new	16	21	14	19	28	17	24	12	30	19
GTGGAAACCGATTACA	ref_5861_new	10	10	10	14	9	9	23	10	14	9
GTGCAATGTGTTTACG	ref_5861_new	71	87	71	60	76	78	88	45	91	59
CCTCTATTTTCTGTAA	ref_5861_new	23	21	16	22	19	16	27	10	21	13
AATTTAGGAGAAGTTT	ref_5861_new	14	33	30	35	23	23	30	20	24	15
TTACGGGAAAGCTTGT	ref_5861_new	193	232	230	163	193	176	219	148	232	175
TCTTTGGGACCAGTGC	ref_5861_new	3	6	4	3	6	3	14	0	8	1
ATTTGGATGGTTATGC	ref_5861_new	0	4	5	1	3	3	1	1	5	4
TCCACGAACGAAGATT	ref_5861_new	34	63	46	45	59	44	41	45	58	37
TTTCGCAACATTCTTT	ref_5861_new	25	31	30	15	28	15	38	15	40	19
CCAGTTTAGTGACTCC	ref_5861_new	15	20	13	20	11	7	26	8	27	8
CTATTCTTCGTCAAAG	ref_5861_new	17	29	24	13	34	9	28	15	34	17
CGAATATCATATCATC	ref_5861_new	12	6	12	8	14	8	4	12	13	9
TACGGGACGTTAACGG	ref_5861_new	11	13	12	15	10	11	5	10	24	17
TGTTAGGATACCCACT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
AGGCCCATATTGGGCT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
GATTCCCGGAAGTTAG	ref_5861_new	89	93	83	90	111	81	93	76	103	60
TGCGCGTGTCTCCCTC	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TTTCGCACACTTCTAT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
ATTCAGCAACCGGCCA	ref_5861_new	0	0	0	0	0	0	0	0	0	0
AAGCGTAGTTGCTGAA	ref_5861_new	61	51	86	67	79	67	77	54	69	42
CTTTAAAAAAGGCCAG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TTATAGCTAGTATATT	ref_5861_new	35	40	42	43	38	32	42	21	46	30
GTCGCAGGGGTTGTTA	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TCTGATTTACCGTCAT	ref_5861_new	25	30	29	41	30	17	42	27	34	15
TGCTCCCTCACCCTCA	ref_5861_new	32	39	27	29	41	27	49	28	39	29
ACTCTCCGGTCCATAA	ref_5861_new	42	104	53	37	92	37	97	49	75	34
TCTGCAAATGCTATAG	ref_5861_new	24	36	42	28	23	20	38	25	22	23
ACTGATCTGTGGGTTA	ref_5861_new	5	6	9	10	4	6	7	5	9	6
CTCGCTACATATCCCG	ref_5861_new	8	17	15	7	11	6	18	9	23	6
CTGCCTAGCTCTGTTT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
ACATATTTATGGCCTT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TATGCTCTTATATTAC	ref_5861_new	12	22	18	24	20	14	20	17	25	15
GAACAATCGCTCTAGA	ref_5861_new	0	0	0	0	0	0	0	0	0	0
CTAAAGACAACGGCCA	ref_5861_new	116	162	177	151	161	131	185	125	194	105
CAATGGCCCAAAGGTC	ref_5861_new	9	13	7	6	6	5	7	3	15	5
TGGACACTTCTGTGGG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
AGGCAAGTGAACTGTA	ref_5861_new	0	0	0	0	0	0	0	0	0	0
AGCGTATTCTGCGTTG	ref_5861_new	8	14	13	21	10	16	16	15	18	11
ATACAAATCCTATTTA	ref_5861_new	17	20	18	24	21	19	6	18	18	20
ACTAACCGCTGTGTAG	ref_5861_new	59	85	50	56	94	51	98	46	121	36
TTTCTGTGCGGCGGAC	ref_5861_new	44	79	68	64	70	64	73	61	88	56
GCAATGTTTTGACGGT	ref_5861_new	0	0	0	0	0	0	0	0	0	0
AACGAGACCGCAGGCT	ref_5861_new	6	8	5	4	3	9	5	5	2	1
GTGCACACTAAGGCAC	ref_5861_new	0	0	0	0	0	0	0	0	0	0
GTCTGCCTTTCTGCTT	ref_5861_new	15	23	11	19	16	16	34	16	17	17
AGGAGGCATCCTCTGT	ref_5861_new	20	32	30	20	28	15	19	19	32	26
TTTCACTGGCACCAAG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
ACTTTCGATTCTCAAA	ref_5861_new	15	17	21	4	13	7	13	9	11	9
GCCTGGAACCCGCCCG	ref_5861_new	4	2	3	4	7	7	3	4	2	2
TCCTGAGTCATTAAAG	ref_5861_new	41	62	47	31	87	48	79	40	80	31
GAGATGTTTGCGTCCG	ref_5861_new	10	10	11	11	16	3	13	9	5	8
AGAGAGCAGGACTGTA	ref_5861_new	3	3	1	4	1	5	3	5	9	5
TTTACTTTACCACTGC	ref_5861_new	0	0	0	0	0	0	0	0	0	0
TTATTTCATACAAAAT	ref_5861_new	43	49	30	40	29	40	59	17	70	27
GCCCAACGGCGCATTT	ref_5861_new	32	33	54	41	36	33	32	28	39	28
GCTTAATTAACGTTTG	ref_5861_new	0	0	0	0	0	0	0	0	0	0
AGTATGTCGGTATGTG	ref_2950_reverse	1	1	3	6	0	0	1	2	1	2
CCTGCTTGACCGTCAA	ref_2950_reverse	10	15	15	11	15	14	15	6	16	7
TCGTATACAGTGGCTC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCGAGGATCGGAC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTATACTGGCTGA	ref_2950_reverse	27	14	27	21	20	22	20	16	11	22
GGTTGAACATACGGTC	ref_2950_reverse	39	33	60	50	34	47	38	51	32	40
CGCTTCCGACTTTCGA	ref_2950_reverse	19	27	16	26	28	14	16	21	28	14
CCCAATAACCGTCTAC	ref_2950_reverse	11	4	14	12	3	9	9	6	6	4
AATCGATTCGTCGAGT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GGCTACATGTCAGTCC	ref_2950_reverse	17	13	22	23	8	12	7	13	13	4
GTTTATGTGCGCGGGT	ref_2950_reverse	158	121	191	181	132	161	113	155	160	145
TTTCTAATTACGGAAT	ref_2950_reverse	13	9	22	10	8	18	4	13	6	9
GACCTTTTGAATGTGT	ref_2950_reverse	154	107	157	129	108	123	117	121	108	112
CATCTGGGGTTTCGGC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCCTACATGCGAA	ref_2950_reverse	0	3	0	0	0	4	0	1	1	1
ACAATTCCTGCCGGCA	ref_2950_reverse	82	45	110	72	46	87	48	62	62	69
AGGGCTTATAGCTGAT	ref_2950_reverse	33	20	31	14	14	32	15	29	22	19
CAACAGCTATAACAAT	ref_2950_reverse	196	195	252	228	172	219	213	176	197	213
TGGAACTGTGAAATAC	ref_2950_reverse	15	8	12	15	9	7	8	31	13	13
ATGGGGTATGCTACAA	ref_2950_reverse	24	7	19	14	12	19	7	25	9	12
ATACGTAATGGTACAT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTGATGAGCCGC	ref_2950_reverse	110	64	92	102	62	100	55	68	51	68
GTGCGTTCGCAATAGC	ref_2950_reverse	45	59	72	60	44	63	63	59	54	71
AATTGTTAACTCTGCA	ref_2950_reverse	129	108	156	125	86	110	82	128	84	110
CACATTCCGGTCTTTA	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGAGTTCACGTGG	ref_2950_reverse	95	54	89	70	45	58	58	75	53	76
CCCGGCTGTTCTTGTC	ref_2950_reverse	13	23	27	10	13	7	12	14	16	18
ATGCTAACCGGGCGCA	ref_2950_reverse	56	45	66	49	30	58	36	48	42	55
TTCATCATCGGGTGGT	ref_2950_reverse	10	9	11	4	8	11	8	8	10	9
ATCAGGCGCACGGCGG	ref_2950_reverse	41	16	52	51	22	31	29	37	34	28
CGGATTGTCTCCCCTC	ref_2950_reverse	16	8	9	8	9	9	10	5	12	12
CTCTCCGTTACCCCCC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAATATGGGCACT	ref_2950_reverse	84	63	135	109	75	105	64	76	61	88
GTATCTGATTCCTAAT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GAGCCATCTTTCTAAG	ref_2950_reverse	48	108	58	62	94	53	118	56	106	50
ACCGGTAGACTACCGT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
ACCGAGCTGTGGAAGG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTGGGCACCCAAG	ref_2950_reverse	17	4	13	27	15	21	9	15	12	17
GGTTCGACGCAACCCA	ref_2950_reverse	59	57	91	80	45	56	63	59	65	73
TCCTAATTTTCATCTT	ref_2950_reverse	12	9	17	11	9	8	6	7	10	9
AAGCCGTCTAGTCGTG	ref_2950_reverse	16	15	21	11	12	17	21	11	15	22
GATGTAGGACGTTTGG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTTAGGTTGCTAC	ref_2950_reverse	87	84	120	119	77	92	77	77	83	101
GCTACCATTAAAGTTG	ref_2950_reverse	13	9	24	15	19	21	12	13	21	13
TTTGCGATTTACGATT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GGTATGCGCCGCTTGT	ref_2950_reverse	30	24	33	30	28	30	17	27	23	24
TTATAAAGCGATCATT	ref_2950_reverse	31	29	43	28	18	45	25	27	18	23
CGCGTGGGCAATGGGA	ref_2950_reverse	34	15	25	26	13	20	12	19	7	12
AAGTGTCTCGAATTTC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTAACGTTATCAGCTT	ref_2950_reverse	37	26	50	33	22	44	21	32	26	43
CATTGATTAGAACATC	ref_2950_reverse	7	10	9	4	4	7	10	10	7	13
CTAGAGTTAAATTCGT	ref_2950_reverse	26	17	31	24	19	30	29	25	24	27
AATGAATCTTGCCCTT	ref_2950_reverse	8	5	15	13	5	7	8	10	6	8
CCAATTTCGGGCGCGT	ref_2950_reverse	102	60	153	144	101	112	94	128	103	102
AGCGTTATTGGCACCT	ref_2950_reverse	28	29	36	21	20	41	39	48	26	31
ATGTGCCCAACTGCTG	ref_2950_reverse	62	28	65	66	35	44	42	63	38	46
GCTTGTATATCGACGG	ref_2950_reverse	7	7	7	9	6	5	9	10	5	6
TGGATACATGGCCTGT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CGAACCCTTCATTCCT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGCTGCTCGCGAT	ref_2950_reverse	22	20	47	42	22	41	19	26	16	37
TCCCCATCCGCTCGCA	ref_2950_reverse	5	7	11	5	9	5	12	10	14	5
TCGATCTGCATTTCAT	alt_2950_reverse	184	92	207	161	106	167	97	152	104	187
AGTAGTTTATCTAGTT	ref_2950_reverse	95	82	113	83	76	95	83	108	104	81
TCCGATTTGCACACGG	ref_2950_reverse	27	13	16	26	15	15	16	21	15	24
CCTCCGCAAGCTACCG	ref_2950_reverse	9	11	9	11	5	11	8	8	9	8
AGGGTAATATGTACTT	ref_2950_reverse	26	23	34	17	15	21	15	33	10	25
CCATCCCTGCGGGCGT	ref_2950_reverse	28	11	43	33	16	33	13	12	9	13
TAGTCTGGAATCCGTC	ref_2950_reverse	5	8	8	7	4	6	8	11	3	6
GACCCCGATGGAAATT	ref_2950_reverse	58	36	63	80	40	64	35	46	42	55
TTAGTTTAATGTTACC	ref_2950_reverse	69	51	101	74	53	64	62	79	80	75
AGCGCTTGATGTCCCT	ref_2950_reverse	18	17	37	21	17	22	14	31	16	20
CGTGCAGGTGCACTAC	ref_2950_reverse	67	67	78	88	80	48	52	59	71	54
TCAATGTTGTCGCCTG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGACCAGGGTCG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CAATAATGCGATAGTT	ref_2950_reverse	133	78	139	109	84	109	89	128	117	104
CGCGTATCCTATTTTT	ref_2950_reverse	87	65	129	110	55	105	63	79	68	80
AAGTGCCGCACACCGT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGAACTTTGGCCT	ref_2950_reverse	6	11	2	3	6	3	12	6	5	2
TATTTCTCTCGCACAT	ref_2950_reverse	28	14	30	22	20	22	25	21	19	27
GGTTTTCCTATTTTTA	ref_2950_reverse	15	8	8	15	7	7	9	11	6	8
GCGGAGCTGTTCTATC	ref_2950_reverse	99	86	135	113	79	91	66	98	82	85
CTAGAGGCCAATTCTC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTTATGTCGGACTGCC	ref_2950_reverse	16	4	15	4	4	11	7	11	8	8
GTATCTGCGCCTTATC	ref_2950_reverse	24	12	24	33	19	31	16	22	17	19
TTTAATTGGTGCCCCA	ref_2950_reverse	47	29	50	54	19	41	34	30	35	39
ACTATCCCATCCCTCC	ref_2950_reverse	32	20	34	26	26	21	17	35	18	21
TCAGCCTCCGACGTAG	ref_2950_reverse	16	16	17	22	20	25	20	20	26	18
ACGTCCGCCTTCTGGG	ref_2950_reverse	33	24	33	23	22	23	22	27	15	25
TCGGTTTGACCGTTTG	ref_2950_reverse	15	5	2	10	14	7	9	5	14	6
GGCTCTGCCAGGTCTT	ref_2950_reverse	8	5	13	6	3	5	6	8	6	11
TAAACGGTAAGTTGTC	ref_2950_reverse	67	32	93	82	33	67	31	65	36	52
CGGTCGACCACGTTAC	ref_2950_reverse	66	41	54	49	30	54	49	48	26	43
CCTAGTTCTATGTCTA	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GGCACGTTTCGCGTAA	ref_2950_reverse	50	55	70	70	39	68	48	45	59	56
ATAAGGCGTGATTCTG	ref_2950_reverse	12	7	28	13	14	9	10	8	16	14
TGCCCCCCGTAGAGTG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TCTGACTTGATCGAGT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGCTAGCTCAGCT	alt_2950_reverse	40	17	61	44	30	52	39	48	38	50
ATATATATTTGCACTT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTGCTGCTGTGG	ref_2950_reverse	27	24	38	21	22	17	27	18	35	26
CCCCGCTGTCGCATGA	ref_2950_reverse	287	158	354	277	151	260	170	280	163	260
TTAAGCATAAAAAGTA	ref_2950_reverse	28	10	45	28	21	28	23	17	23	20
TCTCCGTTGGGCTTTG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTATAATCTAACTCTG	ref_2950_reverse	30	36	23	39	24	32	33	32	27	38
CGTACCGTCAGTATCG	ref_2950_reverse	33	27	30	45	34	29	35	31	36	35
CAGTTGCTATAAATCT	ref_2950_reverse	10	12	20	13	18	8	9	10	12	8
CACGGCGACATGTTGT	ref_2950_reverse	10	8	12	16	6	9	7	7	7	14
GTCTTTGTTACACGTC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTCTATCATGTATGGT	ref_2950_reverse	79	62	122	82	59	82	51	85	66	58
GAAACCCCATTAAGCA	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTATAAGCTTGCA	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCCTAATCACACG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TCTTATCGTGCGACTT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGGATCAGGTCAA	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTACAGCTACTGCTAT	ref_2950_reverse	42	27	34	39	31	45	26	36	51	34
ATTCGACAACCAGTGT	ref_2950_reverse	49	25	53	44	35	46	32	37	21	42
ATCATAGTTAAAACGG	ref_2950_reverse	61	40	91	81	36	73	32	68	51	68
AATGTTCCGAGTATTG	ref_2950_reverse	54	31	69	41	44	47	35	48	46	49
CAGCTGTTATTTCCCG	ref_2950_reverse	54	27	59	39	37	40	39	58	27	42
GTGTCAGTGTAGATTC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTCAATCGCGGTTGAC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTTGTCTAGAGTA	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCGCTGCCCGTA	ref_2950_reverse	69	45	71	76	50	49	54	70	47	63
CCGCAATGCCTGTAAA	ref_2950_reverse	52	38	79	77	27	70	59	80	55	52
GTCTTCCTTTTCTACA	ref_2950_reverse	31	24	37	44	22	31	28	26	25	25
ACTGAGTTTTAGTATG	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCTCTATGGGTGC	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
GACATATGACGGGTAC	ref_2950_reverse	31	17	32	27	24	21	27	19	9	29
GGCAGTCCATGAATGG	ref_2950_reverse	7	4	6	5	7	6	5	3	5	6
CATCCTTCCTGTCTGC	ref_2950_reverse	50	51	68	65	49	56	52	59	45	47
CCGGCATAGCCGTCCG	ref_2950_reverse	55	50	61	48	68	49	55	56	61	51
AGGGTACTACTTGGTT	ref_2950_reverse	34	28	38	33	37	33	27	33	47	36
TCGCTGTAGTCTATAG	ref_2950_reverse	25	18	47	34	21	16	11	25	21	23
TGCATGAACTTCTTCT	ref_2950_reverse	0	0	0	0	0	0	0	0	0	0
CATACATCCGACCGGC	ref_2950_reverse	6	15	6	4	14	3	11	3	9	5
GTAGAGTAGTGAATCG	ref_2950_reverse	38	29	44	38	48	39	26	54	28	29
TCCCGCACGATTACGT	ref_2950_reverse	4	18	10	7	21	7	16	6	20	9
AATTCAGTCTCACGCT	ref_2950_reverse	17	13	16	13	15	18	7	14	9	16
CCGCCAATATCTAGGC	ref_2950_reverse	205	269	224	197	280	175	299	200	324	177
CGCGATCGCAATATTA	ref_2950_reverse	28	29	38	39	9	34	28	33	15	33
CTCGAAGTCGACCCTC	ref_5753_new	19	22	18	22	23	20	26	19	29	17
TGTATGCACGGAGTCT	ref_5753_new	71	93	111	69	84	89	84	60	107	61
GTACGTGTTTCAGCTC	ref_5753_new	33	32	45	44	39	30	39	25	44	26
AGTATATGCGACGTCC	ref_5753_new	0	0	0	0	0	0	0	0	0	0
GAGACCGTGGAGGATC	ref_5753_new	0	0	0	0	0	0	0	0	0	0
ATGCAGGTTCGTAACT	ref_5753_new	74	67	73	70	67	61	95	75	90	61
TACTTTGGCTTTCACT	ref_5753_new	11	11	20	9	15	20	22	16	27	11
GTATTGTTTTCATCGG	ref_5753_new	187	135	212	205	172	155	149	166	190	198
CCTTTCCATCACTCCA	ref_5753_new	34	168	38	36	152	24	161	25	133	17
GTGCACCGGAACTCGT	ref_5753_new	38	56	45	41	48	44	48	43	51	33
TGAGAGTTACGGTGCG	ref_5753_new	0	0	0	0	0	0	0	0	0	0
TACGGTCTTTTCGTTT	ref_5753_new	7	8	8	9	23	9	11	8	11	8
CTGATTCTGTATTGTA	ref_5753_new	8	6	7	2	7	11	3	8	5	4
CCGTGATTATCTTTTA	ref_5753_new	82	75	91	78	91	67	67	47	73	63
AGGTCAGGATCCGCGA	ref_5753_new	22	16	24	14	18	24	16	19	18	17
TGAGTTAACTGTGTTA	ref_5753_new	12	12	18	7	17	8	16	11	15	9
ACGTTATAAGGTAATA	ref_5753_new	32	30	39	28	43	34	34	39	43	34
GCTTACGCAACATACT	ref_5753_new	0	0	0	0	0	0	0	0	0	0
CGGCAGTTATTCCAAT	ref_5753_new	82	59	82	73	73	75	80	54	80	55
GACCGCTGAACTATTC	ref_5753_new	17	22	19	23	23	24	28	18	17	20
GCAAAGCCTGCCAGCA	ref_5753_new	156	125	168	154	143	164	135	169	146	151
TTGGTCTTCAGAAGGT	ref_5753_new	64	64	64	81	83	50	55	54	73	43
CAGTTGCCTCTGTGTA	ref_5753_new	11	9	16	10	11	14	15	18	8	17
ATTCTACCTGTCAAAT	ref_5753_new	23	14	33	29	25	27	17	20	15	24
GCATGCCTGTATCAGC	ref_5753_new	8	7	12	23	17	16	18	19	18	20
CATCCATGTGCGCCTC	ref_5753_new	4	43	15	11	35	10	37	6	31	10
TTTGCGTCGTCGTCCC	ref_5753_new	20	10	16	29	20	15	14	19	18	22
GGTGAGATATTCGCTA	ref_5753_new	9	14	8	21	19	20	8	19	8	7
GGGGCATACCAGCAAG	ref_5753_new	3	7	7	5	9	3	2	5	6	7
TTTCATAACATAGTCA	ref_5753_new	12	10	22	12	17	11	18	11	18	13
TGTAGCTAGACATCAT	ref_5753_new	0	0	0	0	0	0	0	0	0	0
GTGGAAAATTTTACCG	ref_5753_new	29	39	32	27	19	27	28	28	22	27
AACTATCCCTCGGTGC	ref_5753_new	56	96	65	69	89	58	106	41	118	69
AACATTTCGGGTCGTT	ref_5753_new	21	22	22	22	23	22	19	15	21	24
TGCGTGCTGTCGGGAC	ref_5753_new	204	145	207	196	160	165	193	178	195	162
CAACACAGTGTATATT	ref_5753_new	37	39	32	28	27	26	40	24	28	29
CAGGCCTGGGTCCATG	ref_5753_new	10	14	25	8	25	15	16	13	34	11
TGAATATGTCTTGAGC	ref_5753_new	3	4	4	3	10	7	5	7	6	4
TTGACGCTGGGCTCGA	ref_5753_new	27	21	40	54	19	29	26	22	36	22
CCCCTCCAAGTAATAG	ref_5753_new	0	0	0	0	0	0	0	0	0	0
CGGGAGCCTCCATCTA	ref_5753_new	0	0	0	0	0	0	0	0	0	0
GGCCTTCATCCGGCCC	ref_5753_new	12	11	13	8	16	19	19	16	13	11
GCATGGTCCTTTTAAG	ref_5753_new	20	23	20	21	10	19	26	12	24	27
ACTTTCCTCAGGAAGC	ref_5753_new	0	0	0	0	0	0	0	0	0	0
ACACACACGTAGCATC	ref_5753_new	26	19	20	29	25	25	20	24	26	23
GCGACCTGTAGCATTC	ref_5753_new	2	3	2	2	1	1	0	0	3	2
TGAGGCCGCTGGAAGT	ref_5753_new	24	32	46	41	22	36	27	31	51	28
TTTGACCCTTCGGAAA	ref_5753_new	7	11	18	7	11	12	7	8	9	8
GGCAGTGGATCGTCGT	ref_5753_new	57	50	92	59	46	85	65	50	56	59
CCGGCTGTGAATGAGA	ref_5753_new	17	38	19	19	35	11	30	10	30	11
TTTCAACAGTTTCGAA	ref_5753_new	13	15	31	16	18	12	15	5	14	13
CTGTAGGGTCTTTGCT	ref_5753_new	42	48	66	41	48	29	41	39	39	40
TGCTTGCGCGCGTGCC	ref_5753_new	15	12	27	21	19	13	15	17	15	17
AGATTAGAAACGGACT	ref_5753_new	20	20	23	24	32	23	18	26	14	12
TAGGTACTTCTGTAAC	ref_5753_new	25	74	24	17	62	22	80	21	80	14
CATTAACCAAATGCGT	ref_5753_new	0	0	0	0	0	0	0	0	0	0
TACACACACCGGATCA	ref_5753_new	9	20	3	9	20	6	15	12	28	9
TACCTATAACTGCCAT	ref_5753_new	0	0	0	0	0	0	0	0	0	0
CATGGCCGTGTCGTTT	ref_5753_new	32	20	39	34	20	32	35	19	28	33
GGACGTCATTTTACCC	ref_5753_new	15	8	6	12	8	11	10	9	17	7
ATGACGTGCTGATCTC	ref_5753_new	19	24	26	28	23	33	33	23	22	13
TGGCATTTTGATCATA	ref_5753_new	20	10	15	10	8	11	12	12	11	8
GGGGTTGCACGAATAA	ref_5753_new	39	37	44	40	47	30	67	41	55	37
GAGACCGTGGAGAATC	ref_5753_new	214	194	251	265	187	218	207	182	192	174
CACCATGCCCTACTTG	ref_5753_new	0	0	0	0	0	0	0	0	0	0
GCACTATCCCGTACTT	ref_5753_new	15	53	59	50	43	27	34	37	38	42
ATTGTTCTATTCAAGG	ref_5753_new	25	35	28	25	32	38	34	36	29	23
ATTATCTCTCCGTAAA	ref_5753_new	34	29	51	26	45	39	42	28	42	43
GTACGCCCTATAGGGG	ref_5753_new	3	6	8	6	2	4	6	1	3	3
GAAGTTTAATCAGCAT	ref_5753_new	48	52	56	54	56	58	40	46	60	63
TTCATGCTTAGTTAAC	ref_5753_new	0	0	0	0	0	0	0	0	0	0
GTTTGCGTTTAGTGCT	ref_5753_new	0	0	0	0	0	0	0	0	0	0
CTGAGGATTTCTCTAC	ref_5753_new	0	0	0	0	0	0	0	0	0	0
GAAGGAATCGGCAATA	ref_5753_new	14	11	11	13	14	8	17	22	19	6
TAAGGACTGTGTGTAT	ref_5753_new	0	0	0	0	0	0	0	0	0	0
AGTGCTGCAGTGCCCG	ref_5753_new	0	0	0	0	0	0	0	0	0	0
TTGATAATCCTTTTAC	ref_5753_new	26	25	27	18	13	13	28	17	24	23
TTTCAGGGGCCCGGTA	ref_5753_new	0	0	0	0	0	0	0	0	0	0
CAGCAGGTCCCTTTGG	ref_5753_new	0	0	0	0	0	0	0	0	0	0
CGATCATCCTCGTAGT	ref_5753_new	0	0	0	1	0	0	0	0	0	0
GTCAGTTCGCTTAGAG	ref_5753_new	2	5	3	3	12	3	1	1	3	4
ATGGGTGAGCCGATCC	ref_5753_new	6	8	11	8	9	11	8	4	9	9
AAAGAGTTATTAAAGT	ref_5753_new	34	41	32	21	26	28	29	26	29	19
AGCTTCAATTAACCGT	alt_565_RC	11	7	20	21	14	12	6	17	8	10
GGTTGATTCGATAAGT	alt_565_RC	33	24	40	44	30	33	30	46	16	38
TGGGCCAATCACAGCT	alt_565_RC	57	24	68	51	37	35	31	49	42	38
TTATCTGTAGGATTGT	alt_565_RC	26	18	28	23	15	22	8	29	26	34
AGGGAGCGTGTGTATC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CCTGAGTTTATTTTTA	alt_565_RC	58	55	86	66	38	63	52	54	39	43
GTTGATGTATTGCGCG	alt_565_RC	7	6	13	7	9	2	3	5	5	3
TGTCTGCAGGGTCCGA	alt_565_RC	65	44	91	87	46	81	57	56	43	48
GGTATCCCTCTCGGGG	alt_565_RC	70	62	64	69	55	69	57	48	58	51
CTTCACTATTACGGAT	alt_565_RC	12	12	15	14	16	15	6	15	15	7
ACGCAGGCCGATCATA	alt_565_RC	11	8	17	10	12	18	12	10	14	7
CCAACCTTCAAACATA	alt_565_RC	3	7	4	2	5	2	7	4	8	1
TAGCGCCTTGCTAGCC	alt_565_RC	25	25	44	22	16	21	14	29	16	25
GCGATGTGGACACGCA	alt_565_RC	8	2	6	8	3	9	4	11	5	8
TCCAAATATGATTTAC	ref_565_RC	209	186	317	244	163	207	182	224	184	235
TTATGTACATCGACAC	alt_565_RC	74	67	68	81	76	71	54	61	67	43
TCAGTTCTAGGCCGAT	alt_565_RC	8	5	8	10	2	6	9	4	5	4
AGGTCGCATGACTGTG	alt_565_RC	65	53	79	55	29	54	41	49	32	44
GTGACCACACACATCG	alt_565_RC	0	0	0	0	0	0	0	0	0	0
AGCTAAACTTCAGCAT	alt_565_RC	35	23	32	29	33	42	18	32	29	22
TCGTCATGTACACTGA	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CCAGCAACCGTCCGAC	alt_565_RC	10	108	9	4	103	9	105	13	107	9
TCCTAAATAGCTAATG	alt_565_RC	21	10	9	17	10	11	8	12	8	8
CCCCGCATAAAATTTG	alt_565_RC	0	0	0	0	0	0	0	0	0	0
GGCCTCTGAACTGGTC	alt_565_RC	57	42	60	53	32	51	36	45	35	45
TTATGTCGGGGCCTTA	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TCAGTCTCCGTTTACC	alt_565_RC	1	5	3	1	4	1	8	3	4	4
TCACATACCCGTACAC	alt_565_RC	8	7	12	9	10	12	6	7	13	10
ACAATTTGCCCCTCGA	alt_565_RC	16	14	29	23	15	12	9	20	17	19
ATCGCCTACTTCTATA	alt_565_RC	173	154	201	200	157	174	156	182	169	153
CAGCCCTTCTCATAGA	alt_565_RC	43	26	42	34	39	35	30	29	29	30
GCTGATGTGTTAAGGC	alt_565_RC	14	14	7	16	4	9	9	11	6	13
TGATCTGTGCACTTTC	alt_565_RC	19	16	23	18	13	18	8	16	10	16
TTCTTTATTCGTCCCC	alt_565_RC	52	34	51	57	32	38	39	52	25	39
CGTCTTTTTTATATCC	alt_565_RC	83	31	86	98	61	80	50	81	46	70
CTGTGATTTAATTCTC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
AGGCCTACCGCTGGGC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGTTCCGCGAGC	alt_565_RC	115	71	129	118	84	107	73	122	81	116
GATACGCCTAAACGCT	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TTCGTGCCATCATGGT	alt_565_RC	192	154	246	219	154	223	179	226	172	204
CTCGTCTCAATTGGTT	alt_565_RC	15	16	31	24	26	14	26	18	24	18
GATGCATTACTTCAGT	alt_565_RC	44	48	86	49	59	66	44	59	43	52
CCTGTAATGTTTTAAC	alt_565_RC	22	14	36	28	27	25	25	28	27	27
TTTTTTAGTTCCGAAC	alt_565_RC	41	34	47	38	37	41	23	34	39	37
TTGTCATGCGGGGGAC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCTCATTACGTA	alt_565_RC	2	7	6	5	1	5	4	9	6	4
TCCGTGTTACGTACTG	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CGGTCCAATGCTCAAG	alt_565_RC	67	46	95	77	57	63	58	66	71	59
CGATTGCGGTTGGTTC	alt_565_RC	73	58	103	92	59	86	55	92	45	83
TGTGGGGTTCAGGTAT	alt_565_RC	112	89	150	115	80	98	101	135	92	104
GTACCATCTAGATCTA	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TTGCATCCCAATATAC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CCCCATACCACCGCCA	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TATGCTGCCAACCAGT	alt_565_RC	57	34	89	68	39	72	50	55	41	62
AAGGCGTCTAGCTTTT	alt_565_RC	0	0	0	0	0	0	0	0	0	0
GTTCCATATCAACCGG	alt_565_RC	63	36	75	69	28	62	32	58	37	52
TTTCTAATATGATCCT	alt_565_RC	13	8	24	13	7	18	10	21	13	7
ATAGTTCTCCCGCTTC	alt_565_RC	59	38	89	62	55	51	45	60	50	58
TGTGACTTACGATTTT	alt_565_RC	0	0	0	0	0	0	0	0	0	0
AAATTTATTCGTGGGT	alt_565_RC	4	3	7	6	5	4	3	5	1	9
TCAGTCTCCCTGTCTC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CTGCAGAAAGAGTCGT	alt_565_RC	59	34	50	58	30	53	39	51	34	45
CTTTTTTCTTATAAAC	alt_565_RC	45	33	87	70	44	59	33	64	41	56
GTGGTCACGTCCGTTA	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CGAACCCTACCGAGTT	alt_565_RC	5	6	14	12	6	8	9	18	3	9
GAAGTATTCCGGTTGA	alt_565_RC	39	29	48	38	25	38	34	48	37	37
GGAATGCAGCTTAATG	alt_565_RC	22	14	31	29	9	12	24	23	17	15
ATGCTCGAGCCACTGA	alt_565_RC	19	14	25	11	15	23	4	21	20	17
ATGGTTCATTGGTTTG	alt_565_RC	40	35	61	46	41	48	30	46	23	33
GTGTCGTAGGTATTGT	alt_565_RC	18	12	15	11	17	11	11	14	18	3
TCAGTAAATACGCTTT	ref_565_RC	110	47	124	106	59	92	66	97	73	91
TTGTGGCTTATCAAAG	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CCTCTCACGGGCCCCT	alt_565_RC	50	47	60	55	30	44	33	43	41	44
CGCTTTCTATACTGAG	alt_565_RC	21	9	14	18	14	13	11	20	16	11
TGCCCATGGCTCCGTG	alt_565_RC	106	75	157	135	59	113	99	97	100	93
AATTAGGTACGCTTTC	alt_565_RC	87	51	108	88	56	85	51	72	55	82
TCGTGTCTTGATCTGA	alt_565_RC	103	89	147	139	92	119	84	113	69	103
CCTGGTTCCCAACGGT	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CCGACGTCACAGTATC	alt_565_RC	12	13	21	22	14	17	12	16	17	14
TGCTATAGTATCATGC	alt_565_RC	26	19	34	18	17	19	25	22	11	21
CCTCATTCGCGACATC	alt_565_RC	79	49	81	71	48	71	62	63	55	50
AGATTTGGATGATCCA	alt_565_RC	13	13	16	15	11	15	8	17	10	16
TTATATCTAGAAGTTG	alt_565_RC	0	0	0	0	0	0	0	0	0	0
ATCTGTTCTAGTTCAC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CAGCCTGACGTCCTAA	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TCGTCTCAGATTCACG	alt_565_RC	150	126	141	140	123	126	133	121	129	118
TCTTGTGTCTGTAATA	alt_565_RC	0	0	0	0	0	0	0	0	0	0
GATAATAGATATCCGT	ref_565_RC	34	17	24	30	31	26	30	23	34	30
AGAGGTCTTTGTTATT	alt_565_RC	31	16	34	23	22	29	15	16	15	24
CTTTGTCTGCGCCTAG	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TCTGCACTGCTGAGGT	alt_565_RC	0	0	0	0	0	0	0	0	0	0
AGCTAATTCTTTAGCC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CGTTACGTGAAATGCT	alt_565_RC	53	30	60	48	38	49	41	46	35	33
TGATAACCGAGTGTGT	alt_565_RC	26	24	41	34	33	30	32	38	25	25
CAGACGTGAGAGTCAT	alt_565_RC	40	28	51	51	32	40	34	55	30	38
TCTTTTCAATTAACAC	alt_565_RC	33	29	40	33	27	42	28	45	15	41
GTGCCTTTCGTAAAGT	alt_565_RC	0	0	0	0	0	0	0	0	0	0
TGCAACGGGTGTTCGC	alt_565_RC	45	29	53	48	35	36	35	58	48	40
TTCTTTAGTCGTTAGG	alt_565_RC	75	59	93	82	57	63	61	58	73	69
TGTATCTTGCTGAAAC	alt_565_RC	0	0	0	0	0	0	0	0	0	0
CTCATCATTGAAAGAC	ref_5826_new	58	81	63	48	106	68	104	64	102	55
TCTCTGCAAATCCTAA	ref_5826_new	27	44	27	29	48	27	50	25	44	28
AATCATCGTTGGTACA	ref_5826_new	37	34	50	47	66	29	78	25	48	39
CATCCGTCGCAATTGT	ref_5826_new	195	279	215	179	363	171	316	198	330	176
TATGCATGTAATGACA	ref_5826_new	0	0	0	0	0	0	0	0	0	0
CTCATTAACAGGATTC	ref_5826_new	5	8	13	5	13	5	14	8	13	5
CTTATGCGTAGGGAAC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
CGCGTCTTAGCTTGCT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
ATCAACCTCCGTGTCC	ref_5826_new	26	45	35	26	44	29	52	19	62	38
TAGCCTGTTGTACCCT	ref_5826_new	58	117	91	57	132	67	137	43	140	54
TTGATCCGTGCCGTCA	ref_5826_new	14	34	25	17	25	18	26	20	32	17
CACCATATACCATTTG	ref_5826_new	52	73	38	42	78	47	82	38	51	36
CTCAGGCAGGCGTTAC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GTCTCGCTAAGTGGTA	ref_5826_new	4	11	6	6	6	10	16	3	11	2
TGACCCACATCTGGAA	ref_5826_new	8	12	10	9	9	8	15	8	9	6
TGCGTTGATCATAGAT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
CCTGATTGAACATGTT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
AGTTCAGCCTGCTCTG	ref_5826_new	12	18	9	9	21	9	14	6	18	7
AGGGTATGACAGGCCC	ref_5826_new	9	9	7	8	12	11	6	7	12	8
TACCTTTCTGTACCAG	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TTGCGTAACACTTGGA	ref_5826_new	10	11	9	5	15	8	23	4	10	4
ATACCTTAGAGTCATT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
AAACGACCAATCGCTG	ref_5826_new	19	41	26	20	33	17	30	29	37	26
GGGTTCTACCTTCGTA	ref_5826_new	38	57	41	33	68	29	70	31	83	32
AGTCCCCGTAACATTC	ref_5826_new	3	5	7	4	5	2	9	5	3	2
TTGGTGGAATGAATGT	ref_5826_new	23	40	30	31	50	28	50	32	45	38
ACGTTCGTAATATTTT	ref_5826_new	8	14	11	5	7	7	7	6	15	10
TCGGCGTGGACAGTAC	ref_5826_new	9	98	14	15	109	16	107	9	120	10
CACTCCGTTCGGTGCT	ref_5826_new	0	33	5	4	41	1	35	3	53	1
TTATGACAAGCGCGCG	ref_5826_new	2	7	9	10	9	11	8	10	5	1
CCGCGGGTTGGCGTTA	ref_5826_new	5	14	10	7	16	7	21	7	24	6
TCCTTGGACTCCTTAT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GCTCGCCTACCGGAGC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
ATATCCTTAGAGACCC	ref_5826_new	26	39	43	37	42	29	39	33	62	25
GAGGTAACTTGTTTGA	ref_5826_new	60	79	63	53	60	49	74	62	67	53
GCGGTTGGGGGGATCA	ref_5826_new	17	29	24	14	23	15	34	18	29	17
TGTCCATTGGATAGCT	ref_5826_new	28	20	27	30	34	25	39	19	49	16
AGAGTCTGCTCTATGG	ref_5826_new	2	3	3	0	3	5	0	0	2	3
CCCGTCCGCCGTGTGC	ref_5826_new	65	78	59	59	78	46	53	59	70	56
ATGGCGCTATGTTGAG	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TTGGGTTGCTCGATAG	ref_5826_new	83	115	99	65	107	78	139	93	156	76
TCTTTATACTGCATTT	ref_5826_new	6	4	9	3	9	6	5	8	4	5
GCATTTCTCCGTAGAC	ref_5826_new	22	31	15	29	35	25	22	11	34	24
TTTGTGTCTTCTGGCG	ref_5826_new	10	6	15	7	12	4	9	4	13	5
ATACTAAGTTTTTTAT	ref_5826_new	70	82	82	65	105	50	123	57	94	49
CGTGTTGTCTCTGTAA	ref_5826_new	25	36	36	27	31	19	40	20	35	23
TCCCATTCCGAGAAAA	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TTGGACTGATCGGATC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TGCCGATACCCTACCG	ref_5826_new	11	26	8	6	21	6	41	12	28	10
ATTCGTAGAGCGAATT	ref_5826_new	14	25	20	22	19	17	26	19	36	8
TCATTCGTTGTATTCT	ref_5826_new	13	15	19	10	16	12	21	11	20	8
CGATGCGGGTCTAGCT	ref_5826_new	17	16	10	5	20	11	12	7	12	11
AGAGCCTGTTCGTTTG	ref_5826_new	0	0	0	0	0	0	0	0	0	0
CTGAATTCAATCTTTA	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GTTTTAGGCGCGTCTA	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TAACACACTGCCAGGG	ref_5826_new	42	79	59	42	55	47	78	37	100	34
ATTGATGTTGATAACG	ref_5826_new	0	0	0	0	0	0	0	0	0	0
AGCTCCAGGAATGCCT	ref_5826_new	17	17	25	16	24	11	15	9	14	15
GATTTTGAGAAGGACA	ref_5826_new	14	10	10	11	15	11	11	4	17	8
ATGACTCTGTCTTTTC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
ACAAGGTTCCAAAAGC	ref_5826_new	16	37	26	18	38	23	25	14	30	26
GATCACTTGTCTACAC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
CACTCAGTGAGGGAGC	ref_5826_new	55	74	71	47	76	66	80	40	80	45
GCAGGTCACTGTTCAC	ref_5826_new	11	16	10	24	20	16	27	16	21	17
GCAAGATTTGTCGCTC	ref_5826_new	22	21	19	15	25	23	21	16	25	21
GGATCTCTGCAATGTC	ref_5826_new	1	6	1	3	2	5	1	2	3	3
TTGGAAGGATTTGCAC	ref_5826_new	2	2	2	6	3	2	2	2	3	2
CTACCGTCCTCGACAC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GGTTCCTCGCTGCGCC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TTAAACGCTCCGCTTG	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GTGGGCGGGCAACTCA	ref_5826_new	1	1	0	0	0	1	1	0	0	0
TGTCGTATTTGCGTGG	ref_5826_new	41	32	29	23	46	42	47	21	56	22
TCACTCGCAGCGTCTT	ref_5826_new	6	17	8	7	21	10	15	2	11	4
GCTTCTCTCAACACGA	ref_5826_new	2	4	2	3	3	2	2	3	5	4
CACCCAAGACGTTCAC	ref_5826_new	3	22	5	9	5	9	16	5	8	8
CATCAGGTTCTTTAAG	ref_5826_new	70	116	88	74	155	76	140	76	131	59
TCTTAGTGCTATGGCT	ref_5826_new	32	25	33	24	28	23	30	18	35	27
AGTTTTGTTGATATGG	ref_5826_new	104	111	121	113	122	106	129	90	151	83
CCCCTCCATCCAATCC	ref_5826_new	64	72	70	56	101	52	87	53	82	54
CTCTTACTGTAATCCG	ref_5826_new	70	75	63	38	95	60	82	47	66	56
TCGCCCGGTTCATGTA	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TGAAGTGGTTCGTACT	ref_5826_new	11	20	28	14	31	16	25	20	29	12
TCATATGCGTTGGTGA	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GCTACGGCTCTGTGGG	ref_5826_new	6	2	1	2	1	3	12	10	2	1
CCTCTTTATCCTGTGT	ref_5826_new	4	22	12	3	11	10	6	15	9	7
CACTTAACGGAGAATA	ref_5826_new	28	29	26	26	28	32	46	24	43	24
CTCAGTAAGTGAATAC	ref_5826_new	33	34	25	27	49	30	54	17	50	26
CGCGGCAGTTTCTACG	ref_5826_new	1	2	1	2	0	0	3	0	0	0
CGACTGTACTACCTTA	ref_5826_new	4	1	0	1	5	3	1	0	3	0
CATGTAGGGTTTGCGC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TAACGGCAACTATGGA	ref_5826_new	1	12	6	6	7	2	5	1	7	3
TCTCAGCATGTACTTA	ref_5826_new	49	69	56	68	67	50	68	58	76	40
TAGTCCGTAGCGCATC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GACAATGGTAGCGTAA	ref_5826_new	42	99	80	77	86	59	100	53	81	63
TTTAAATGCTGCGATG	ref_5826_new	4	4	5	6	11	3	7	8	13	3
TGTACATTGGCGCACT	ref_5826_new	3	5	6	7	4	3	4	4	8	1
CTGGGTCAACAGATTA	ref_5826_new	0	8	2	3	4	1	4	0	8	1
TGGCCAATTCTGTGTC	ref_5826_new	29	120	40	32	99	34	89	26	101	35
TTCTAGAGTCATTTCT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GGTGAAGCATCCTTTT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
CAGCCGGGAACAATTT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GGAGTAGTGTGTAAAA	ref_5826_new	8	35	29	13	28	14	26	21	34	18
TGATTCCTTACTCCTA	ref_5826_new	11	32	12	11	21	21	25	16	29	17
GGTAGTGGTTTGGCAT	ref_5826_new	3	9	7	9	16	12	12	3	15	8
AATTCCTTTCATCGTG	ref_5826_new	3	14	5	3	4	6	5	3	7	4
CGTGACACCAACCTGA	ref_5826_new	67	120	75	54	88	47	101	46	119	48
AGTCCTCGAGGGTTAA	ref_5826_new	79	131	80	83	116	83	137	60	132	91
AAGTCTGGCTAGTGTC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
CTCTCAGCCCTTTGCT	ref_5826_new	0	0	0	0	1	2	0	0	0	0
TTGTTGGTACGTTAGT	ref_5826_new	27	47	38	40	35	35	43	29	59	17
TCCATGTGCCATATTT	ref_5826_new	37	56	53	43	53	43	77	42	58	37
GTACTCGTCCCGTGCC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
AGTTTGAGGTCCACGT	ref_5826_new	13	20	15	8	25	16	20	8	23	5
TCCACGTTCTCAACGT	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GGTGCGACTAACTCCC	ref_5826_new	0	0	0	0	0	0	0	0	0	0
TTTCCTGGTCAGCTTC	ref_5826_new	0	0	2	0	0	0	0	0	0	0
GTAGGGATCCGGTACA	ref_5826_new	7	10	9	8	10	4	11	7	12	6
AACCGGAACGGGATCG	ref_5826_new	0	0	0	0	0	0	0	0	0	0
GTATTGCAGCAGCTGC	ref_5826_new	37	59	62	32	68	34	64	38	63	45
ATCGTACATACGTAAA	ref_5826_new	86	116	113	85	155	83	98	83	123	62
ATAGTACACAGTACAT	ref_5826_new	8	14	8	4	16	7	6	3	14	3
TTCGTCTTGTAATGTC	ref_5826_new	16	37	22	19	22	18	34	13	35	18
TCTTTAACGAATTGTC	ref_5826_new	2	8	10	4	7	4	7	6	7	3
TATCAATTCCTTGGTT	ref_5826_new	13	22	12	22	36	16	34	16	31	15
TTAACCCGTTTTAAAA	ref_5826_new	17	30	31	21	34	24	36	26	28	15
CGATCCCCCATTTACT	ref_5826_new	45	70	51	41	86	39	71	40	95	55
AGGGTAATGGCGCAAT	alt_5864_new	37	20	41	31	27	32	27	28	16	21
ACTTCGAAGCAGGCCT	alt_5864_new	96	55	122	104	66	83	69	94	54	75
TTCGACTCGGCGTCCA	alt_5864_new	0	0	0	0	0	0	0	0	0	0
GGACAGGAGATCTTCG	alt_5864_new	0	0	0	0	0	0	0	0	0	0
CAACCGCACATCACCC	alt_5864_new	0	0	0	0	0	0	0	0	0	0
GCCAAAGCCGTTGAAT	alt_5864_new	48	48	69	66	54	48	69	63	55	56
TCTCGAAGGACACGTT	alt_5864_new	83	66	89	91	64	87	79	76	58	68
CGTAGAATCGTTTACG	alt_5864_new	113	86	134	95	106	119	86	98	100	90
GGCCCGCGATCAGTCC	alt_5864_new	24	15	31	21	15	17	15	27	16	20
CCCCGCGCAGGTCTTG	alt_5864_new	211	161	231	192	144	188	158	231	166	180
GCACTGGGCACCATAA	alt_5864_new	20	16	20	13	14	17	11	23	13	20
GTGGTCCCTGCCTGAT	alt_5864_new	96	89	99	108	79	77	84	85	83	80
ACCCTCAAATTCTAGC	alt_5864_new	70	48	88	79	59	64	71	82	75	55
CGCCTCACCCGATTCC	alt_5864_new	0	0	0	0	0	0	0	0	0	0
TCATGTCTTAGCCCGT	alt_5864_new	0	0	0	0	0	0	0	0	0	0
GTGGGCGGGCATACAA	alt_5864_new	55	33	51	64	22	48	40	41	42	50
GGGTCCATCGTATTGG	alt_5864_new	0	0	0	0	0	0	0	0	0	0
TGGAACGCCGACACGC	alt_5864_new	44	35	43	50	30	45	31	52	29	45
TAGCCGAAGTACTTGG	alt_5864_new	139	102	161	144	98	133	100	134	124	111
CGGTTAATGCCTGATC	alt_5864_new	28	16	38	38	19	37	24	36	28	35
ATGTGTTCTTTCTGAA	alt_5864_new	9	2	3	6	3	1	5	0	0	1
GTGGAGAGGAACGGGT	alt_5864_new	55	28	67	66	45	58	42	51	40	45
AAGCCAATCAGTAGGC	alt_5864_new	188	184	227	184	168	187	212	216	196	199
TTGGATCTTTGGAGTG	alt_5864_new	52	53	66	58	38	66	42	53	44	65
GGCAGCATGCACACCT	alt_5864_new	13	16	17	19	15	17	5	23	12	21
CGTCTTCTACCCGTCG	alt_5864_new	8	36	18	18	24	7	37	14	33	5
TTCTAACTCAGTCAAG	alt_5864_new	0	0	0	0	0	0	0	0	0	0
GATATATCACGTAGCT	alt_5864_new	12	6	19	11	14	1	7	16	5	8
GCGAGTTGATCCTCCG	alt_5864_new	86	50	105	88	53	88	60	61	61	62
TAATGTTGTTCGAGTC	alt_5864_new	44	31	54	55	31	26	39	48	32	40
GACGGTTTACAGTACG	alt_5864_new	20	10	13	11	14	15	12	19	12	16
GAACGGTATCGACGTG	alt_5864_new	80	61	95	72	51	75	67	81	61	90
TACAGAGGTCTATGCA	alt_5864_new	21	21	33	13	19	26	32	34	24	31
TCTACCTTAGACTTAG	alt_5864_new	36	43	47	49	25	29	30	22	28	33
TAGCCGCATCAGTTCC	alt_5864_new	0	0	0	0	0	0	0	0	0	0
TCTCTTCTCTTTGGGA	alt_5864_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCTACAATAAA	alt_5864_new	25	13	30	16	19	18	13	30	24	14
CATACGTCTTTAATTT	alt_5864_new	200	121	243	221	147	189	138	216	142	197
TTCAACTGGCTAGTGT	alt_5864_new	6	6	10	8	3	7	6	6	2	8
GTTGTACCCTTACGTC	alt_5864_new	58	52	76	71	61	58	53	61	80	59
ACGCCAACGTTCACCG	alt_5864_new	74	45	93	80	43	85	55	86	52	70
AACCCTTCCATGTAAG	alt_5864_new	39	25	37	26	29	42	21	26	21	21
TATCGTTTCCAGAACG	alt_5864_new	238	193	352	267	210	258	196	253	224	250
CAGACTCATCAGACGT	ref_4553_upstream	0	2	0	0	0	0	0	0	0	1
TGGAGTGCGGGGTTGG	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGAAAATACAATC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CGCAATGTTGCGCCTT	ref_4553_upstream	12	9	11	6	10	9	10	9	12	11
TGGTACGGCTCCCTGC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
GTATTGTTGTACTAGA	ref_4553_upstream	11	12	21	12	14	4	28	18	17	10
CGCGACCCGGTCCTCC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
AAAAAGGCCAAATCCT	ref_4553_upstream	16	20	26	12	12	18	17	18	19	13
AGATCCGTCTAGAGCA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TTCTATCAAGGTGGTC	ref_4553_upstream	2	1	2	1	2	0	2	2	4	6
GTGAACTCCAAGACTG	ref_4553_upstream	13	8	22	10	16	14	15	11	17	6
TATGACGATGAAATAA	ref_4553_upstream	140	119	187	156	105	134	113	163	136	153
CTTGTGGCGTTGTATG	ref_4553_upstream	14	15	3	4	20	14	17	8	14	9
TGTCGACTGTGTAACT	ref_4553_upstream	47	51	54	54	36	51	60	46	47	48
CCTCATTTAAAGCCCG	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCTCCGGCCCTAT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGGCACTGAGGTTAGT	ref_4553_upstream	4	8	4	9	8	6	9	5	6	10
GTAGAGGCGTCCACCT	ref_4553_upstream	25	25	27	25	25	23	29	24	31	28
TCACACTCTCCAACGG	ref_4553_upstream	1	6	5	3	5	4	4	7	5	0
ACGCTTCAATTGAGAA	ref_4553_upstream	31	23	40	31	36	27	32	27	38	28
TCAGAGATTCGCTATG	ref_4553_upstream	6	5	5	6	8	4	4	2	5	4
GTATAGCGTCTGGTCT	ref_4553_upstream	51	80	94	66	57	52	61	61	82	49
TTGCCCTAGTATATGA	ref_4553_upstream	22	16	27	26	23	10	8	9	34	24
GGGGCCTGGATCGCCT	ref_4553_upstream	10	19	19	21	21	20	25	16	16	9
TCACCCTGAACTCTGT	ref_4553_upstream	5	7	5	3	0	5	5	3	5	1
GGGAGTAGTCTGAAGC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
GGGATGCACCCTTACT	ref_4553_upstream	68	57	80	57	74	55	65	61	67	51
GAATCCTCTATAAATA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGTGATTCGGCAT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGCAGTCCTTGTC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CACTTGCAAGATGACC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGCAGAACAGTTG	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGGAATAACTATG	ref_4553_upstream	48	66	96	80	68	77	75	71	63	46
AGACCCAGGAGCCGTT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
GATCTGCCGTTGACGC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
AGATGATCTCATAAGG	ref_4553_upstream	33	39	52	34	22	41	27	32	38	27
CATTGCACCTACTCCG	ref_4553_upstream	81	136	115	106	162	90	145	106	143	99
TGACTCGGTCTCACGT	ref_4553_upstream	11	14	10	10	17	14	10	15	18	14
ATGAATGCCACAATTG	ref_4553_upstream	53	58	66	54	64	45	50	64	53	46
CGTGAGCTTCGTGTAA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTTATGTACCCTG	ref_4553_upstream	52	46	61	50	41	44	48	49	47	43
AGATTGATGGGAGCCC	ref_4553_upstream	5	6	16	5	6	5	8	7	6	8
ACCGTACTCAAAATTG	ref_4553_upstream	61	93	83	70	80	74	92	77	100	52
TAGACAGCGCGGGACC	ref_4553_upstream	0	2	1	0	1	1	5	0	4	0
GCACGTTCCATGCTTG	ref_4553_upstream	16	14	18	18	14	11	21	14	19	13
TTCAACTAGAGAGTAT	ref_4553_upstream	12	10	6	7	10	5	8	5	14	12
AACGCAAGTGCTTACA	ref_4553_upstream	9	8	15	18	17	10	13	11	22	12
TCCCATATGTCACGGG	ref_4553_upstream	13	9	16	12	10	11	12	4	11	8
CACACTTGTACTCGCC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGTAGTTGAACTC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTTAACAAGGTTG	alt_4553_upstream	133	118	147	127	121	132	138	102	140	107
TGCTCATGCTCTTTCA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGAAGGCAGCTCTTCT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTGTCGATTCGGG	ref_4553_upstream	4	6	8	3	4	2	1	7	9	5
GCACACGGTACGGTGG	ref_4553_upstream	41	42	40	30	42	19	44	33	28	35
ACAAAAAACAGCTATG	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CGAACTCGTTTCATTC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCATATGCGCCGCGTT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
CCGAACGTCACCCTAT	ref_4553_upstream	8	16	5	9	7	10	12	9	11	5
AGTAAGTATTCTTCGG	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCGACCCGGCAAGTCG	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCCATGAACGTTCGAT	ref_4553_upstream	11	6	4	6	10	5	3	2	5	2
AGCGGCGTCGCCCCAA	alt_4553_upstream	127	112	115	90	110	87	94	101	113	83
ACTATATAGCCACCTT	ref_4553_upstream	9	14	8	6	11	9	7	8	9	2
TATGATCACGACAGTT	ref_4553_upstream	185	141	230	183	183	173	173	157	144	178
TAGATATGTGCGTCTA	ref_4553_upstream	39	39	38	44	51	34	42	38	42	26
TTCTGCTGTTTTTTGC	ref_4553_upstream	11	11	9	15	7	4	12	12	7	6
AAAAGATTTCCTAACG	ref_4553_upstream	11	6	12	4	2	12	4	4	5	6
TTTGACACTTGCGCAC	ref_4553_upstream	35	41	42	36	30	27	39	23	35	26
CCACCTGGGTCGCCGT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTACAGTCGTTAA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGCTATACGGTGAGCT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCCAGTGTTTTCG	ref_4553_upstream	16	15	30	24	16	23	17	14	20	20
ATATCTTAGATTTTTA	ref_4553_upstream	1	9	2	1	7	1	7	1	11	0
TCCCAGCTATTACGTT	ref_4553_upstream	73	79	86	64	61	78	84	61	71	64
TCGTGAATATTCAAGC	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTGCCGGACACTT	ref_4553_upstream	21	22	29	22	37	24	25	22	35	25
GATACTCAGCGGGGTT	ref_4553_upstream	29	28	35	38	25	25	25	31	16	26
ACGTTATTCTGCCCTC	ref_4553_upstream	121	92	133	95	87	100	96	108	87	95
CTAGGTGGTAGTTGTA	ref_4553_upstream	96	86	111	69	93	82	116	78	102	62
CGATTGGCTTGGTACT	ref_4553_upstream	1	0	0	0	0	2	0	0	0	0
ATACTATGGCCGCGCA	ref_4553_upstream	5	9	10	9	10	19	10	10	7	3
ACTTGTGGGCCAAGCA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCATGTAGGCATCTCG	ref_4553_upstream	34	31	41	20	19	34	26	26	44	25
GGCGCAACATTGCTGA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTCCACGTTGGGG	ref_4553_upstream	16	14	18	17	19	10	7	16	15	12
GCCCGCTGGAGGTCAT	ref_4553_upstream	26	28	28	18	28	16	18	15	27	25
TACGATACCCAAGGAG	ref_4553_upstream	1	6	5	3	6	4	5	3	6	3
CTCCGTGAGGCGCATC	ref_4553_upstream	25	39	39	32	38	20	26	17	38	29
GTTTGATCCTTCTCGT	ref_4553_upstream	17	12	15	22	18	12	10	17	21	14
ACGGTTAAAGCTGACA	ref_4553_upstream	5	13	22	5	12	10	12	9	17	7
TCGGCTATAATGGGCG	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGGGTTTTACGTT	ref_4553_upstream	32	34	51	42	33	32	35	22	34	23
GTTGAGCGAAGCAACG	ref_4553_upstream	4	3	3	0	2	0	0	1	2	3
TGCTATTCATTTGATA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TACATTTCTATGTTAA	alt_4553_upstream	144	158	223	185	194	147	167	148	152	138
ACTATGTTATAGTTGA	ref_4553_upstream	2	6	6	6	6	10	2	10	7	7
TAACTGGCCTATAACC	ref_4553_upstream	3	5	8	4	0	8	3	7	6	5
TGCTAATTGATTTCTT	ref_4553_upstream	34	28	31	33	24	33	27	27	34	25
CCGAAGTCGGATGTCT	ref_4553_upstream	27	15	26	26	22	13	20	19	16	15
ATTGTTACATTTACGA	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCCCCGGTATAGT	ref_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCTAAGACAAGTCGTT	ref_4553_upstream	1	6	9	8	7	5	3	1	5	6
CGGACGCAGTCCGTTA	alt_5846_new	2	6	4	3	7	3	8	4	11	4
CGCTGAAACGGTTCAC	alt_5846_new	28	71	35	27	56	30	55	27	67	30
TCTTTCTCCGTAGAGC	alt_5846_new	31	63	29	32	54	20	38	22	67	20
CTTCACCCGGGCCCTT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CCCCTCGCGTGTGAAC	alt_5846_new	5	14	6	5	15	5	12	0	17	5
ACGCTTATTTATCTTC	alt_5846_new	38	69	37	44	71	21	79	36	75	32
TAGCCCCCCATGTAGC	alt_5846_new	9	1	14	4	8	6	17	3	14	4
GCTTAGTTGGCACACC	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TCTTAAGCAGTTCCAT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
AGTGTACACCTTTTTT	alt_5846_new	5	5	5	3	11	4	11	4	8	5
GAGACTTTTTTCTGTA	alt_5846_new	5	14	15	7	12	5	23	7	15	5
CGTCTATGGGGGCCCA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
ACATGCGACAACGGCG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TTTAGCGGATCGTGTC	alt_5846_new	116	227	129	114	232	130	239	95	214	120
CACACTCTTCTCCCAT	alt_5846_new	3	71	4	6	65	5	87	4	79	1
ATTAGTTCGACCTGTC	alt_5846_new	0	2	2	1	1	3	6	1	3	1
AGTGATCTTGTTGGCC	alt_5846_new	11	28	8	17	18	17	38	10	28	8
CTTGGCGCAAAATAAC	alt_5846_new	10	31	17	7	11	7	21	16	31	16
TCCAAACTCACGTGCT	alt_5846_new	5	14	7	4	13	3	17	10	21	2
ATTCTCTCGCATATTA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TGTGTCTGGGTAACAT	ref_5846_new	17	33	15	13	50	14	53	14	41	16
CGTCCGCGGCATCGTT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CTTGAACGTGATCCAG	alt_5846_new	10	20	15	9	31	6	17	10	33	9
TTCTACGTGTAAGTCG	alt_5846_new	12	26	17	11	22	8	25	6	18	12
TCTTAGCAGTAGTTTG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
ACGGTACGCTACATAT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CTGCAGAAATTTCCAT	alt_5846_new	13	60	21	14	48	15	36	17	54	11
CCCACGAATCCCGCGC	alt_5846_new	3	10	3	1	9	3	6	3	7	1
TGTTCCGGTATCTACG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TCCTGACCAGGTAATG	alt_5846_new	11	32	14	20	47	13	40	13	33	17
TGACCAGTTTGATCCA	ref_5846_new	57	69	60	49	83	38	83	27	83	44
GTGTGTTCATCCCGTT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CCTTTTTACAGTTTTC	alt_5846_new	4	19	3	2	36	6	38	7	39	3
AACATATGCTTCACGC	alt_5846_new	20	49	32	18	42	28	49	24	82	13
TGTATTAAGTTTCGTT	ref_5846_new	9	28	24	9	26	16	35	6	29	8
TTCCTCATTCTCATGG	alt_5846_new	1	19	6	0	12	6	15	3	20	1
TAGTAATCGCGCAGAG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GGACATAACTGAGACT	alt_5846_new	21	44	34	20	39	18	46	27	58	13
TGCCCAGTTCGCTACG	alt_5846_new	14	30	7	10	22	6	22	6	23	9
TAACAGTGAAAAGTTA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TCGGGATTAACTGAAG	alt_5846_new	16	30	9	12	21	17	26	15	39	12
CCGGTACAGTCCTACC	alt_5846_new	16	49	22	18	85	14	88	16	104	15
GATAAGGTCATTAATG	alt_5846_new	6	10	6	5	12	5	11	1	3	5
TCAAGTGATACATGCG	alt_5846_new	41	102	47	34	76	40	105	45	87	40
ATATTGGCTGCGCACA	alt_5846_new	13	46	14	20	49	23	53	11	54	15
TTTATCCCAGATCTCA	alt_5846_new	1	13	15	1	19	3	14	9	7	3
TCTCGGCCCCCATGGC	alt_5846_new	42	95	49	35	95	42	107	35	110	46
AGCCCGACTAGCATGA	alt_5846_new	19	27	21	20	52	22	33	12	34	20
AGGCAGCTACTGCCCC	alt_5846_new	19	43	22	20	46	32	39	21	54	17
TTTCGGATTGCGCCAC	alt_5846_new	13	26	9	8	14	10	20	12	24	8
ACACGGTTAGTGGTCA	ref_5846_new	4	17	8	3	16	4	14	3	10	4
CGTTTCAGGTCGCTTA	alt_5846_new	6	24	10	12	17	8	26	9	17	9
ATTTCCCTCCCCAAAT	alt_5846_new	63	226	63	52	188	63	192	59	242	65
GATCCTTAGGGTTAGT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
ACCTGTCTGAATATAT	alt_5846_new	10	28	19	8	24	7	21	9	31	6
TCCCGTACAGTGTCGA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TATGTCTTCTTTGGTA	ref_5846_new	32	55	37	26	71	36	68	23	77	31
CACGCAAGCGTTTTGT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GGAATTTTAAGGTAGT	alt_5846_new	6	14	9	10	22	5	17	16	13	8
GACCTTGTTTTCTCCT	alt_5846_new	4	14	3	7	21	8	10	4	7	3
AAATTACATCTCATAA	alt_5846_new	75	189	108	86	152	80	192	77	164	72
CAGTTTCAAGCCTCGA	alt_5846_new	9	20	6	4	12	6	13	6	17	4
TAAGGGGTTAATGACT	alt_5846_new	11	25	11	10	29	10	25	10	24	13
TCTAGTGTTAATATGT	alt_5846_new	11	32	8	15	19	12	22	10	32	13
AATCAGTAAATCAAGG	alt_5846_new	71	143	72	78	148	73	175	79	161	57
GATCACGAAAGATGTT	alt_5846_new	35	63	35	32	63	25	82	29	68	37
TCATAGTTATCTCCCT	alt_5846_new	14	34	8	9	43	10	49	9	26	13
CATGATTTCTAGCGTC	alt_5846_new	5	8	6	2	8	2	8	5	15	6
TCATGGACCTTTTCTA	alt_5846_new	55	149	61	74	113	62	147	55	165	57
ATCGACAAAAGTTCCG	alt_5846_new	32	72	24	15	58	41	66	32	64	19
GCTTGTAAGAGGCTTG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
AACCTGTACTCTAGCC	alt_5846_new	1	2	4	4	5	2	17	2	3	0
GCCGGGCTTTAATGGA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
AACTTTAGATCCCATA	alt_5846_new	32	36	35	20	69	27	40	31	50	29
AACCTCCGTCAAGATT	alt_5846_new	17	36	20	13	57	19	37	24	49	12
ACTCCTTGGGGCACGT	alt_5846_new	30	38	17	9	56	11	37	13	41	13
ATCAGTGCAAACGCTA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TGACCGGATAGCTACG	alt_5846_new	204	338	203	186	341	195	352	169	329	161
GTGCGCTTTCATGTGA	alt_5846_new	32	72	38	30	88	27	70	27	76	42
TCCGCAACGAGACTGG	alt_5846_new	9	8	3	5	12	5	7	2	10	10
GTCGAACGTGAGAACG	alt_5846_new	16	35	14	21	28	14	39	16	39	12
TTCAAGAATCAGCAAC	alt_5846_new	4	6	0	2	7	1	9	1	10	3
TTACCTATATCACGTT	alt_5846_new	13	26	12	15	37	17	29	21	30	9
TATTTTTGGTGCTCTG	alt_5846_new	3	14	8	6	15	1	19	4	14	6
GCTCCAGGGAATTTTA	alt_5846_new	43	90	37	53	88	36	95	48	96	33
TATCTTCTGCGTTTGG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
ATGTAGTTAATAAATG	alt_5846_new	21	36	26	17	35	21	50	22	52	20
TTTCCCGAACTTCGTA	alt_5846_new	14	38	25	15	37	22	61	17	50	18
CTTTGGTCCACTCGGC	alt_5846_new	15	35	16	11	24	10	34	15	48	17
GGAGCTTTTCCAATCT	alt_5846_new	10	14	14	10	11	4	17	6	17	10
CCAGTGTGAAGCTCGA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CCGGGTGAGATCGCTG	alt_5846_new	8	15	4	4	24	4	13	11	23	5
ACTCTATCATATGCTC	alt_5846_new	0	8	6	1	9	3	10	1	3	6
TGGTGGCATTTTGATG	alt_5846_new	13	34	12	9	28	11	39	6	23	10
CAAACTATTTAATGGC	alt_5846_new	24	50	37	25	66	22	63	25	55	19
GGGCCTAGGGTCTAGC	alt_5846_new	0	0	0	0	0	0	0	0	0	0
AGACGTGTAAACAAGG	alt_5846_new	4	10	5	9	9	6	19	4	19	3
GAGCCCAGCTGGCAGC	alt_5846_new	100	222	158	119	230	114	219	99	231	97
TTTAGAGGCCATAAGT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
GCCTTCCTACGTCTGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TTTGGGTAGTTATCAA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TTCTATGCCCGTTTCG	alt_5846_new	8	34	16	24	34	14	32	21	35	12
CTTTGTCTAGCAATGG	alt_5846_new	22	61	28	13	104	23	102	19	96	24
TAGCTGTATTGTGCCT	alt_5846_new	60	102	70	42	129	50	114	48	122	59
TGCCCGGATAGCTACG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
GTGTCGTTTTAGATTA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CCATATCCTGTGTACA	alt_5846_new	3	19	9	4	19	3	12	1	6	8
GCTTGTCCGGCATGCA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TACTTCATCACGGTGC	alt_5846_new	45	79	61	50	70	62	80	32	125	50
ACGAGCTTGAATTGTT	alt_5846_new	23	36	22	14	34	16	54	28	56	13
TGTCATTGTATCGGGT	alt_5846_new	2	2	2	1	10	2	10	0	8	1
CGGTTGGAACTTCAGG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
ATCGGCGAGTTCGAGT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TGCTCTGTTATAGGCC	ref_5846_new	109	210	105	106	288	89	241	91	250	103
ATTCTTAGCATCTCTT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CTCGCCTTATCGTACA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CTCCTCTTTGGAATGT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TGCCCGCGTGTCAGCT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TCTGGTGTTTACGAAG	alt_5846_new	10	39	16	15	35	17	37	15	41	9
GAGATCAATCGATATA	alt_5846_new	15	72	42	38	74	34	75	38	69	24
ATTGTAGCGCCAGTGT	alt_5846_new	61	135	71	59	152	70	159	49	175	43
CAGTGGTCCGTAAAAG	alt_5846_new	21	39	22	22	34	15	54	24	62	20
ATCCTCACTACCCCTC	alt_5846_new	5	6	3	2	8	1	8	0	8	1
TTGGAGGCCTTGTGAT	alt_5846_new	2	8	4	4	8	4	12	2	16	1
ACTCGCAACCGCCGGA	alt_5846_new	28	73	30	24	89	22	80	21	73	25
TACCCGACTCCGGACT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
GCTAGCCGGATCCGGT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
GCAAGACTCTGTTCGG	alt_5846_new	29	68	23	18	58	32	90	24	70	19
AGTATTTACATTTACC	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CTCATATGACCCGTCT	alt_5846_new	3	0	3	1	4	2	10	2	3	2
TACAACAATCGCCTGG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CGGCGATCTCTTTGTA	alt_5846_new	5	8	0	2	8	2	1	0	6	1
TAGTGCCATTTCATTA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TCGCAGGCTCGCAGAC	alt_5846_new	10	22	16	7	16	8	36	3	13	7
ATTCTATCAGTTTACT	alt_5846_new	16	35	19	12	33	16	43	10	22	16
CGCACTTTCAACCCCA	alt_5846_new	16	60	16	13	54	13	59	9	64	12
TCCCCCACCATGTTCT	alt_5846_new	66	160	80	57	117	58	157	61	136	54
AAATTCCTTTTTATGA	alt_5846_new	5	9	3	9	4	1	4	1	2	5
TGACCGGTTTGGGCCG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GGTCTACGGCACACAC	alt_5846_new	8	13	26	14	9	7	16	6	19	9
TTCGTTCATATTATCC	alt_5846_new	0	0	0	0	0	0	0	0	0	0
GACATCACCACCAACA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
ATCCTTCTATGATCCT	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TGGTTCCGGAATCGAA	alt_5846_new	28	35	40	20	46	30	53	34	59	22
ATTTCGCCGTAATACT	alt_5846_new	14	17	12	4	14	10	18	9	18	9
GGGTTCCGCTTATTTT	alt_5846_new	4	16	6	11	24	3	23	5	20	4
CGTAGCGGATGGTGCG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
CTCCGGGCCTGGTTCG	alt_5846_new	11	14	4	8	21	7	23	9	18	5
CAATACCCATCCTTAT	alt_5846_new	57	131	55	36	117	44	122	42	122	35
CACTTTTTTATCCTAA	alt_5846_new	19	51	26	28	48	26	39	18	46	14
GTGCGTTGAACTACCA	alt_5846_new	17	43	20	12	35	10	26	22	43	12
ATATAGATATAGCATT	alt_5846_new	0	3	3	2	2	2	2	0	1	1
CTCTTCTTGCAGGTAT	alt_5846_new	2	11	9	7	15	4	12	1	14	5
CAGGGTACCATATATG	alt_5846_new	0	0	0	0	0	0	0	0	0	0
TGAACGGCTTCTTCTT	alt_5846_new	36	50	32	21	66	19	54	35	54	16
ATTGGTGGCCTGGCCA	alt_5846_new	0	0	0	0	0	0	0	0	0	0
GCAATGTAAGCCTTGG	alt_5846_new	11	38	24	19	29	29	34	16	25	15
CAGTTCGCTATTTCTT	alt_5846_new	11	43	23	7	42	10	50	14	53	13
CTATACGCAGTACCGC	alt_5846_new	0	0	0	0	0	0	0	0	0	0
GTTAATCACCGGTCAA	alt_5846_new	16	42	23	17	33	13	33	15	42	10
TTTCATCGGTTGTCAG	ref_1514_RC	18	73	39	36	97	36	84	28	85	25
CGTGTTTGCTATCTTC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TTATGTAGCGGAGCTC	ref_1514_RC	14	23	18	14	14	10	21	9	24	12
CTTAATTTAGGAGTAA	ref_1514_RC	56	84	80	71	94	67	110	53	94	62
CGAGAGCTCATCATTT	ref_1514_RC	2	4	0	4	0	2	7	3	5	3
GCTATCGGTGACCTTC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TCTTCTCGTAATTTGG	ref_1514_RC	2	2	3	0	2	1	2	0	5	1
ATATCACATATCCTTA	ref_1514_RC	7	22	5	7	21	7	49	2	38	6
AATTTATCCGTTATAG	ref_1514_RC	7	6	5	4	8	7	10	1	5	5
ACTTTGTCGAGTGGCT	ref_1514_RC	25	17	35	37	30	22	22	18	28	13
TCCCTAAATTAAGTCT	ref_1514_RC	12	19	21	9	23	14	13	10	15	15
CTCCCGTAAGTGCGCC	ref_1514_RC	6	16	5	3	18	9	13	4	18	3
GCAGGTTGCTCTCTTT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CGATATTTTACCATCT	ref_1514_RC	40	63	40	44	60	35	67	39	50	29
CTGTTACGCCTGTTAC	ref_1514_RC	36	51	42	43	84	33	65	29	49	36
GGTTGAGATTACGCCG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TATTGTTATTCCCACG	ref_1514_RC	47	45	47	45	40	50	55	49	55	36
ATACATGTGGTTCGGC	ref_1514_RC	51	60	96	67	73	54	63	47	74	53
CTCTGGGGTCAGGTGC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CCCGGCTAAGTGCCCT	ref_1514_RC	5	14	6	5	9	7	16	9	19	6
CTTTTGTTCGCTGGGT	ref_1514_RC	40	57	38	38	59	32	50	46	64	30
ACCACTTCTACGGTCC	ref_1514_RC	15	28	15	37	33	14	32	13	32	17
TCATTTCCGCTCGCTA	ref_1514_RC	40	39	41	21	30	29	38	46	49	37
AGCATGCAAATTAAGT	ref_1514_RC	19	26	27	16	24	22	24	22	27	8
TTCGTTTCGCCTCTGA	ref_1514_RC	23	24	30	21	30	28	33	21	26	15
GCAACGTGCATTTTGA	ref_1514_RC	13	18	20	8	15	8	16	14	21	12
TTTTGCGTATTTTTTC	ref_1514_RC	23	31	40	33	33	31	26	31	34	33
TACATACGCTCTGATC	ref_1514_RC	214	222	297	208	283	207	264	191	274	201
AGGGTCTGTTATAGGG	ref_1514_RC	33	33	33	30	29	25	30	29	50	21
AGGCTGTGTTTTGGAC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
AACCGAACGGGTTTCT	ref_1514_RC	22	17	15	6	14	16	16	16	12	6
CCTTTCCCAATGGTTG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GTCCCTCGCCGATGTT	ref_1514_RC	27	76	43	30	66	31	53	24	66	22
GAAGGTATCCCCACTC	ref_1514_RC	4	6	10	5	6	8	8	3	6	3
CTTCATCCCGAACGGC	ref_1514_RC	28	30	24	20	50	15	33	25	42	21
TGCCGGCCCATCACGA	ref_1514_RC	7	18	9	5	10	13	7	5	16	8
TGCAGGGCAACGGCGG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TAATGCATCTCAGCCT	ref_1514_RC	76	103	116	70	99	69	139	77	119	63
TCGGCTTTTGTTTTCT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CGGAAACGGCTCATGT	ref_1514_RC	68	79	86	57	64	48	70	49	74	64
TGTGGCTGCTACCATT	ref_1514_RC	4	5	6	6	2	4	10	2	4	5
CCGGGACACACCTTCA	ref_1514_RC	5	10	13	6	13	6	18	10	25	13
CCAATCTCTCCTGTTT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GGGGCAACTTGTCTCG	ref_1514_RC	42	39	39	26	52	27	52	24	39	20
TATTCGTTCAATTATT	ref_1514_RC	26	41	40	41	40	40	40	21	55	35
CTTGTGCGCAAAGGCA	ref_1514_RC	41	76	46	39	68	37	56	37	72	46
GCTAACGGTTAATACG	ref_1514_RC	43	50	50	48	45	42	51	51	78	36
CCTTGCTTTCTCCAGC	ref_1514_RC	17	33	29	25	25	30	39	13	30	13
TTTTGTGTCGGAAACG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GCGCGCAGGACCACGT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
AGGCGAAGTGACCTCT	ref_1514_RC	82	91	106	83	104	93	65	73	102	64
GGTCTAGAACCGACAT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GTGTGACGTGGATCGG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GCGACCTAAGGATGAG	ref_1514_RC	52	62	34	37	60	58	48	41	75	49
CCCAGTTTGTGTTTTT	ref_1514_RC	28	59	37	33	46	26	53	35	53	22
AAAACGTACGAGTAGT	ref_1514_RC	4	13	5	5	7	4	5	1	5	4
GTCTCTTTTCGTCGTT	ref_1514_RC	0	0	1	2	4	2	1	2	5	1
ATCCGGTATCCATCAT	ref_1514_RC	131	171	141	127	153	135	184	123	166	105
TTCCTCTTCCCAGCTC	ref_1514_RC	13	25	22	22	16	15	23	20	24	19
TGCTTTCATCACTGCT	ref_1514_RC	4	12	12	19	21	14	8	10	15	7
GTACTTCTGTCTTGCA	ref_1514_RC	24	20	11	13	17	15	16	11	11	14
TATTAGTTCCTGACTT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GCGGGCAAACTTTTTC	ref_1514_RC	30	45	61	41	32	40	49	41	45	26
GCCAAGCCTTCCAACT	ref_1514_RC	14	16	12	11	28	7	34	12	26	10
GAAGCCGGGTTCTAGA	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CTAACGGTGACCGAAT	ref_1514_RC	5	4	7	6	5	4	8	8	5	1
GAGTTCTAGACAGTTG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CCGAAAAGGGTCGAAA	ref_1514_RC	28	62	42	40	65	39	48	39	58	35
AGTCGTCGGTCCACTT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CAGGTAGAGCTGGTTC	ref_1514_RC	27	60	67	41	70	23	58	40	51	41
AGCCGCGTCTAACCGT	ref_1514_RC	27	80	32	33	67	27	75	34	86	24
GCTACCGGGTTCTCCC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CAAGCTCACCATTCGC	ref_1514_RC	9	26	11	21	21	11	31	15	21	7
CGCGGCCGGCCGTATC	ref_1514_RC	18	38	25	24	42	28	50	20	51	23
TTTGTGATCCACCTTG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GGTCTCTTACATTGTA	ref_1514_RC	6	9	4	8	3	6	11	4	10	8
TACCATGTTGGGTCAT	ref_1514_RC	7	1	2	0	6	1	4	2	4	4
ACGTACAGCTGGAACT	ref_1514_RC	11	23	16	19	16	13	28	2	22	14
TGGACGGATGTACCGC	ref_1514_RC	5	3	3	5	3	2	3	1	3	3
CATTCGTGATATCCTT	ref_1514_RC	27	23	27	21	34	33	35	30	39	18
ACGGTGCAGATGTAGA	ref_1514_RC	20	38	25	22	26	36	44	25	52	27
GGAGGCCTAAATAGCG	ref_1514_RC	63	53	70	58	61	48	86	48	70	52
TTGTCACAGTACCGCC	ref_1514_RC	5	11	11	4	6	9	6	6	14	8
GTTTGCAATTATGTTG	ref_1514_RC	23	15	10	5	22	17	28	13	23	12
AGTCTAAGAGTTTCTA	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
ATCCGATAAGGTCCGT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TCTGTTGCAAATCTCT	ref_1514_RC	61	55	61	73	60	56	71	53	85	42
CACTTAGATCATGCCA	ref_1514_RC	36	38	32	30	35	30	50	21	37	21
GCCGACGCGAAGACCA	ref_1514_RC	6	6	5	4	3	9	9	6	9	7
TAACTTAATTATTCCC	ref_1514_RC	0	8	4	1	9	2	9	0	9	4
TTGATTACGACCGTTC	ref_1514_RC	26	53	46	37	70	29	45	28	60	33
CAAACGTTGCTTACGA	ref_1514_RC	16	28	22	18	27	21	23	6	28	14
AGTGTATCTCGCCACT	ref_1514_RC	1	6	10	4	7	5	5	2	2	1
GGGGCAATCAGCAATT	ref_1514_RC	5	6	7	4	9	9	3	4	5	5
GTCAGAATTTAGTCCT	ref_1514_RC	8	12	8	9	7	6	15	8	9	3
GTGCACGTCATGCTTT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CTGGTCTCTGTGTGGT	ref_1514_RC	7	32	5	5	24	2	27	5	28	6
TTAAAGATAGGACGTG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTAGCGAGGTAG	ref_1514_RC	55	60	52	55	66	39	65	56	77	45
TTTCGAACGTAGTGGC	ref_1514_RC	43	59	67	44	67	66	59	48	59	53
TGTCATGGACCTGATG	ref_1514_RC	34	23	26	29	18	22	19	20	26	24
GACCGGAGTTTGGGTT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CTTTTATCCGCGCTAA	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
GTTTTAATTCCTTCCG	ref_1514_RC	34	37	37	30	37	23	41	27	52	26
GCTTGGCGATGTGTCG	ref_1514_RC	2	1	2	0	0	1	2	1	3	1
TTTGCGGATCACCTCA	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TTCGGTTTTGGATCTG	ref_1514_RC	60	59	67	58	71	54	79	53	85	41
GTACCTAAATGTATCA	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CTAGGCTGTGTCTTTA	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TTAGGGGCCCTATGGC	ref_1514_RC	12	15	13	13	15	11	14	14	22	12
CGGGTTGCCCTCCAGC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
CGAAACAGAGTGGTCC	ref_1514_RC	41	48	65	53	81	37	59	57	74	42
CCGATTCACTTTTAGG	ref_1514_RC	1	9	6	7	8	7	12	7	10	6
TCCTGTCGCGAAGTAG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGCTAATCGGCC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TGCGTTTACCCGAAGA	ref_1514_RC	8	6	10	15	10	7	20	9	13	13
CATTGGTATCAACGTA	ref_1514_RC	43	48	48	49	51	35	47	37	54	35
TTTAATGTCGGTTATG	ref_1514_RC	19	32	29	14	23	20	33	22	28	19
TATTCCGCAGACATGG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TGTGAGCTACTTCTTT	ref_1514_RC	15	16	28	11	22	17	18	19	23	20
CTTCAGGTGCGCTCCT	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
ACGATCTACATCTTTC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TCGTGTTTGTCAAACG	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
ATTTCTTGTCAGGCCG	ref_1514_RC	37	32	50	37	44	32	54	50	52	32
TCTGCTTGCTAATGTC	ref_1514_RC	68	64	82	71	58	59	80	72	71	60
ACCATTAACCCAAATC	ref_1514_RC	0	0	0	0	0	0	0	0	0	0
TATTAGCTACACACTA	ref_1514_RC	54	75	67	70	61	49	73	48	58	45
CCCCTGATTTGCTCTG	ref_1514_RC	3	9	3	1	16	0	15	0	18	1
GTTTGGTCCTCTGTAG	ref_1514_RC	23	41	17	15	30	15	20	13	21	29
TTTCTGGCTTGATGTC	ref_1514_RC	40	39	40	35	67	27	51	27	48	24
CCGATTCAGCTCAATC	ref_1514_RC	30	48	27	44	38	20	63	32	47	32
ATTTGAATTAATAGCA	ref_2171_RC	12	7	24	13	5	11	6	10	6	15
AATTATTCAAGGCCCA	alt_2171_RC	41	8	61	52	11	35	17	34	11	23
AGGGTGCTGTGGAGTT	ref_2171_RC	1272	459	1509	1327	453	1224	506	1210	527	1118
CTAGGGTCTCGTATCG	ref_2171_RC	338	134	392	366	117	272	131	271	144	304
TTTGACTTGGTCCTAC	ref_2171_RC	1509	596	1866	1571	611	1473	581	1450	646	1449
GAGTAACGCTATATTT	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
CGACGAGTTTAACACT	ref_2171_RC	134	48	152	120	50	115	50	130	45	94
GTACTGCAACAAATCA	ref_2171_RC	70	30	86	54	32	61	43	63	31	73
TTTGAGCGCTTGGGGA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
GCGCTTTTATGCGTTA	ref_2171_RC	96	26	104	112	26	82	30	96	26	81
TCTATTTCGCTAATAC	ref_2171_RC	63	19	62	68	20	50	31	66	24	36
GGATCTCTTGCAACTG	ref_2171_RC	121	39	179	109	45	122	43	142	56	138
AACCCAGGCACCTCGC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TAAGTTCGTTTTAATG	ref_2171_RC	76	24	120	71	38	77	38	71	33	80
CACCCGTAGGTTCGAA	alt_2171_RC	50	44	73	43	27	65	36	68	28	48
GAACCGCTTGTACAGC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TCCGCCAGGCGTGTCA	ref_2171_RC	168	45	184	150	37	133	42	144	64	142
CTTGTGCGTATTTTTC	ref_2171_RC	259	85	286	234	72	242	87	210	90	223
CTAAGCCCAACTTAGT	ref_2171_RC	19	9	24	18	5	23	6	8	9	18
CAGTTTCCCTTTCGAA	ref_2171_RC	97	32	129	104	38	78	40	87	45	101
CCTAGGGTTACTCATT	ref_2171_RC	53	22	60	56	26	61	20	44	30	67
TTTCAATTGGGAACTG	alt_2171_RC	177	49	261	174	51	181	87	125	63	160
GTCTAGTGATGGACAG	ref_2171_RC	1	0	1	0	0	0	0	1	0	0
GTAGCCCGAAGGCAAT	ref_2171_RC	294	124	354	276	103	259	79	257	108	259
TTGTTACTTGTCGTCT	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
ATCAGTAGGGCCCATT	ref_2171_RC	189	61	258	186	72	196	51	168	58	167
TCTTACCGGCGACGGG	ref_2171_RC	115	51	122	129	38	123	48	120	46	95
AGTCTCCTAGCCTCTC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TAAACTGAGTGTTCTA	ref_2171_RC	76	40	79	37	40	44	30	47	32	64
AACGTGTACCTAATCT	ref_2171_RC	33	3	38	14	9	29	9	28	12	26
TAATCCAGTTATCAGT	ref_2171_RC	230	89	234	202	65	224	67	152	79	189
TCCAGAAATTATCTTC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TATACGGATTTGAAAC	ref_2171_RC	147	47	165	142	50	120	47	149	49	133
ATTGTCGGCTTCATGC	ref_2171_RC	583	222	742	580	197	577	187	542	246	601
CAAGGAACCTGTGACT	ref_2171_RC	13	11	19	11	11	14	7	12	8	13
TACTTTTTCTCTTAAA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
GCTCGGTCAGTGTTGC	ref_2171_RC	100	36	107	86	35	93	39	85	27	100
CAGCCCATACCATCCT	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
CGGCTTTCGTGTTTAA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
AGCCGCACTCCGTTCC	ref_2171_RC	8	13	9	6	12	5	15	9	10	4
TCATCAGCGTTGCGTT	ref_2171_RC	112	28	148	107	39	123	37	120	39	112
TTCAGGCTGAACATTT	ref_2171_RC	24	10	42	47	13	40	14	32	11	34
CCCAGGCCGGTCACCT	ref_2171_RC	692	231	821	661	249	617	268	629	264	639
TACTTTGTTTGGCGCC	ref_2171_RC	151	41	169	150	51	155	35	140	58	161
GTTCGTACCTCTTGTT	ref_2171_RC	108	61	142	97	42	106	38	103	55	87
TTGGGCACTTCCTCCC	ref_2171_RC	33	10	10	17	3	17	3	26	7	20
TTCTGACTGTACTGCA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TGGTCTGCGATTCTTG	ref_2171_RC	182	51	213	174	60	172	73	160	71	149
TCATGGGTTTAGTATG	ref_2171_RC	168	55	179	135	53	176	63	133	56	145
AGGCTTCGGGGCCGGG	ref_2171_RC	110	30	125	116	40	104	34	106	42	103
TAGTAGGACATATGCG	ref_2171_RC	37	13	41	26	8	23	17	25	11	23
TTATGGTGTTTTAGCG	alt_2171_RC	160	55	170	128	41	141	39	119	52	119
GTCTGACGCCGATCTT	ref_2171_RC	44	15	56	69	19	56	9	38	18	54
GGAACATTAGTTGGGC	ref_2171_RC	36	10	48	26	7	29	12	39	9	35
AACGTAGCGATATGAA	ref_2171_RC	94	48	150	120	41	76	42	88	46	97
GGCATTATCGCCAAGA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TATGCAAAAGATACCA	ref_2171_RC	34	19	52	60	14	37	15	48	18	33
TTCGTGTGGGACTGTA	ref_2171_RC	229	78	237	193	91	184	91	219	79	189
AAATCTATGCTATCGG	ref_2171_RC	25	14	45	34	18	37	12	32	20	33
TTATCTCATTCCTTTG	ref_2171_RC	37	8	30	29	5	38	13	28	12	40
AACTCCACCCCCCTAG	ref_2171_RC	11	6	16	5	14	5	11	9	15	12
GTGATGTTGTTGTTCA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
GTGATGCGGTCCATCG	ref_2171_RC	177	61	210	176	52	154	84	171	68	137
TTTCGTATAATGCGGC	ref_2171_RC	35	14	37	27	9	30	22	32	20	22
GTAGTCTCCCGCCGCC	ref_2171_RC	49	17	53	45	13	56	18	35	12	47
TCCTGTCTCGCTTCAC	ref_2171_RC	58	17	65	49	24	36	12	43	8	44
GATGTCTTGGATCGGC	ref_2171_RC	38	12	65	57	17	69	24	44	12	47
AATATCGCTTTTAAGT	ref_2171_RC	308	120	409	315	100	308	115	277	103	266
CAATATACTCACGGTG	ref_2171_RC	43	18	50	31	37	42	18	41	24	30
GTCATTCATATTCGGG	ref_2171_RC	55	22	61	58	20	47	15	48	24	43
GAATCCCTAGCATTGA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TTTCTTGAGCTCACAT	ref_2171_RC	67	26	86	83	19	72	20	84	32	67
ATGTGCACAGAAAGCT	ref_2171_RC	70	34	90	96	31	105	28	65	49	66
AGGGTACGTGAGCAGG	ref_2171_RC	44	6	49	22	10	20	13	40	12	27
TCGCGATGTAATTTGT	alt_2171_RC	257	76	252	247	57	231	63	213	54	231
TACCACCGTGCAACGT	ref_2171_RC	235	93	295	250	87	262	118	264	97	227
CGTACTATATTTTCTG	ref_2171_RC	108	49	116	113	30	119	23	87	40	78
TGAGTGCAACAAACTC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
ACTTGACACAAGGGTT	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
CGATCTGAGACTCGCT	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TTGCGCCCCCGCCCGT	ref_2171_RC	80	34	111	105	35	100	31	89	30	89
GCCGATATTTTATCAT	ref_2171_RC	36	9	47	37	14	21	15	36	8	34
CATGAAGGCAAGATGG	ref_2171_RC	22	3	23	26	6	11	4	22	3	18
GTCAGCTCAGTTACCG	ref_2171_RC	12	1	13	16	2	11	5	12	2	9
CGTGAACATTTGTCAC	ref_2171_RC	9	6	10	11	4	15	11	17	6	18
CCGTAGCCCTATCGGA	ref_2171_RC	91	43	89	96	32	100	43	72	45	65
CATCCGGCTTATCGAA	ref_2171_RC	90	21	93	75	42	78	30	65	22	79
GGGCATTTGATTATGT	ref_2171_RC	69	18	87	43	29	65	22	73	22	78
CCGGTATCTTCTTATA	ref_2171_RC	7	13	15	12	11	6	12	9	12	7
ATTGACTTGGTCCTAC	ref_2171_RC	1	0	1	1	0	0	0	0	0	0
TCTTAGGTCAACACTA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
AGGTATTCCATAGTTC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
GACCTCTTTGTCTGGA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
GCTCGGGGGAACTGAT	ref_2171_RC	266	86	329	279	94	264	95	268	86	258
TTTGGGTCCAATGATG	ref_2171_RC	103	40	141	108	32	92	27	91	31	100
TCCATCAGTACCCACG	ref_2171_RC	13	9	10	11	2	14	3	19	8	6
CTGGCTGCAAGCGGGC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
GCTTCCCATCGTTGCT	ref_2171_RC	8	8	16	7	4	7	2	9	3	5
TCCTATAACCGCCCGA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
GCTTCCTTCCCGCGTC	ref_2171_RC	9	6	19	12	13	12	18	17	14	7
CATACGGACCGCAGTG	ref_2171_RC	163	50	166	145	62	150	74	155	68	146
GCCCAGACGGGCACGC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
GAGACCCATTTGATCT	ref_2171_RC	73	50	79	70	24	72	24	69	35	55
AGTGGGGGCTAGCAGA	ref_2171_RC	99	22	120	92	34	99	28	108	32	76
ATATTCATTGTGCTCT	ref_2171_RC	1437	496	1625	1405	476	1360	481	1377	539	1336
TTGGCCCTTTTTAGCT	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
CTTTTTCTATCGTTGT	ref_2171_RC	16	6	21	20	3	16	11	14	7	13
GATATTTTTGTTTAAG	ref_2171_RC	344	90	417	345	129	311	121	344	132	300
ACGCATGGATAGCTCC	ref_2171_RC	446	147	518	447	127	432	151	401	181	429
TCATTGTAATAAAGCT	ref_2171_RC	71	35	115	79	32	75	27	60	34	83
CCTTCGTTTCGCTGAC	ref_2171_RC	66	16	68	60	16	38	21	39	13	50
CAATATTAGTGCAAAC	ref_2171_RC	73	41	118	71	26	69	43	59	52	79
TATGACTTGGTCCTAC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TGCCGTCCATAGTCAA	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
CGTATCTCCATTTCAG	ref_2171_RC	193	69	279	216	48	195	61	182	68	187
CATTTTATTAGGATCC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
CTCACTCTCTTGTGCA	ref_2171_RC	58	31	107	72	43	64	37	73	36	60
GGCTCCTTTCCAAGAG	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TATTTATAATAGGGGT	ref_2171_RC	45	13	43	43	17	38	13	41	18	42
TTTTTTGTACAACCGA	ref_2171_RC	16	4	19	16	7	22	6	16	12	16
CATGGTATTCACTCAC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
AGCTATGGAATACGAC	ref_2171_RC	48	12	54	52	10	52	14	31	22	36
ACGCTAAGGTTAAAGT	ref_2171_RC	189	44	193	167	60	150	64	118	53	142
TCCCTCCCTCTGATAC	alt_2171_RC	90	25	121	101	29	74	31	96	29	100
TTAAGCGCGTTGAGGC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
CAATGTTCACCATCTT	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
AGGTGGCCTAGTGTGG	alt_2171_RC	282	108	365	318	124	289	109	267	125	292
AGCCTTCCCTAGTTGC	ref_2171_RC	0	0	0	0	0	0	0	0	0	0
TGTCACTTAACGCCGA	ref_5945_new	42	61	33	28	64	40	70	28	68	41
CGTCGCGTATGGTGCT	ref_5945_new	31	46	38	17	31	10	34	15	38	16
TAAGGTTTTTGTGACG	ref_5945_new	94	204	162	111	175	102	223	103	248	96
TAGCTGCCAAATATTT	ref_5945_new	22	66	46	46	93	47	62	54	69	35
GTCACTAACTTAAAGG	ref_5945_new	6	9	5	8	3	8	6	2	11	2
TTGTCTCCCGCGGCCA	ref_5945_new	3	6	2	2	4	2	6	1	3	0
ATCAAATTTTCTCACA	ref_5945_new	65	142	90	71	134	75	134	68	127	68
ATTCGCTTTGGTCAGA	ref_5945_new	38	66	38	33	58	38	72	20	64	47
TAGGTACTGAGTCGTT	ref_5945_new	0	0	0	0	0	0	0	0	0	0
ATCCTTTGGCCACCCT	ref_5945_new	0	0	0	0	0	0	0	0	0	0
CAATTAGAACCCTCTC	ref_5945_new	2	53	9	10	39	15	52	12	60	5
ACAGACCCCTGTGCCA	ref_5945_new	12	33	14	17	42	10	34	19	47	16
AAGGTCTCAAGAACCG	ref_5945_new	58	73	68	49	86	50	68	36	94	45
GCAGACAGTCTCTTGC	ref_5945_new	12	34	15	12	40	17	26	15	28	16
CCCCTCATCGTTTTGG	ref_5945_new	0	0	0	0	0	0	0	0	0	0
GTATACTCTTTTGTTT	ref_5945_new	0	0	0	0	0	0	0	0	0	0
GCCTCTGGCGGCCTTC	ref_5945_new	33	43	40	18	50	24	38	23	43	13
TCTGAGATTGAATAAG	ref_5945_new	0	0	0	0	0	0	0	0	0	0
AAGTTTCGGTTCTATA	ref_5945_new	94	164	100	83	195	91	174	88	186	104
AATTGTACACATATTT	ref_5945_new	107	199	122	119	190	114	208	83	199	92
TTACTCCCTTCGGGTA	ref_5945_new	70	177	67	51	167	60	184	59	177	61
GTCGATAGGCTCCGGG	ref_5945_new	4	5	5	9	7	2	5	5	6	5
TGCTGCATAACATTAT	ref_5945_new	0	0	0	0	0	0	0	1	0	0
TGTTTCTATCTCCACC	ref_5945_new	0	0	0	0	0	0	0	0	0	0
CTGTCCCGATTCTCTA	ref_5945_new	2	4	2	2	7	3	4	3	1	4
TAGGCTTGAACTGATG	ref_5945_new	4	8	3	5	16	4	8	7	9	3
CTCTTTTCGCCCCAAA	ref_5945_new	24	26	26	17	45	28	33	11	32	14
TTACGGTAATTGGGAT	ref_5945_new	62	116	94	65	108	48	106	70	108	49
TTTGCGAAGGACTACA	ref_5945_new	15	22	12	9	9	7	17	13	15	9
GTGTGCCTCCGTGCGG	ref_5945_new	0	0	0	0	0	0	0	0	0	0
CTGTCATAATGCTCCC	ref_5945_new	24	51	25	27	37	23	56	30	52	22
GGATCTGGCAAGTAGC	ref_5945_new	54	88	64	64	86	46	109	37	99	45
TTGTCTGATGTCCGGC	ref_5945_new	32	54	39	33	60	42	71	28	68	39
TCTCGCCGGCCACACA	ref_5945_new	13	18	20	13	21	13	19	8	21	6
GCCTCTTCTCACATAC	ref_5945_new	5	5	8	2	12	7	6	3	5	1
CTTCAGGTCAGGCGTT	ref_5945_new	30	51	33	19	31	24	40	33	36	23
AATGTCAGGCGCTTTT	ref_5945_new	11	13	7	6	12	6	13	6	14	2
TGGACTGTCTCTAACC	ref_5945_new	7	13	5	6	17	6	17	9	17	13
ATCACCCGTTAAATAG	ref_5945_new	0	0	0	0	0	0	0	0	0	0
ATACACTTTTTCGCTG	ref_5945_new	24	34	21	13	33	8	29	17	25	20
CATCAGTTTTGCTGTT	ref_5945_new	1	5	3	3	7	7	5	4	8	4
CTTCATTTATATCGCA	ref_5945_new	12	37	29	15	40	17	38	24	53	11
CGCCGTGCTATGAGAC	ref_5945_new	0	0	0	0	0	0	0	0	0	0
CATAGGGCCCATCGCT	ref_5945_new	282	451	376	308	570	306	504	311	557	293
GATCTTTTTTTTTCGT	ref_5945_new	0	0	0	0	0	0	0	0	0	0
GCCCTTCTGATGTAGG	ref_5945_new	15	15	12	7	15	7	13	6	21	4
GATGGCGCTGGGTTAA	ref_5945_new	17	35	24	17	36	25	32	28	37	16
TGTCTAAGTTGTAGCT	ref_5945_new	0	0	0	0	0	0	0	0	0	0
CCGGTGTAGTCACCAG	ref_5945_new	47	101	67	61	109	47	85	41	103	40
CTATATTTCATTTGGC	ref_5945_new	29	37	32	29	41	21	24	17	39	32
CTTGCTCGCCGCGCGC	ref_5945_new	8	19	16	7	16	6	22	13	26	8
TCCGCTTCTGTGGCCT	ref_5945_new	13	14	17	13	41	19	15	14	34	17
TCATGAGGTACGCAGC	ref_5945_new	40	87	47	39	81	65	82	56	92	43
AAAACATGCGCTCCAA	ref_5945_new	0	0	0	0	0	0	0	0	0	0
GCGTAAGCTGTCACCC	ref_5945_new	24	51	22	26	52	28	74	26	55	24
GTATTAACGGGGCAAA	ref_5945_new	4	22	11	12	12	4	18	1	12	7
TTCCTGGCTCATTAAG	ref_5945_new	6	6	5	6	10	10	24	2	11	3
GCGTAGTTCCATCGGG	ref_5945_new	19	36	29	22	43	22	38	16	62	29
TCATCGGCCTTATGTG	ref_5945_new	0	0	0	0	0	0	0	0	0	0
ACAACCGGAAGATCGG	ref_5945_new	0	0	0	0	0	0	0	0	0	0
TTGATACGGCTATCTT	ref_5945_new	12	13	5	6	16	8	23	4	18	8
TCGCCGGATCCTTATG	ref_5945_new	8	41	6	12	51	8	46	8	44	8
GTCAGGAATTAATAAG	ref_5945_new	15	20	13	14	29	10	21	11	32	10
TTAGATTATGGGGTTA	ref_5945_new	32	51	39	35	42	22	36	25	45	21
TTCTCTGGCCAAGGTC	ref_5945_new	7	9	5	7	6	10	5	9	10	2
TTCTGTTCTCCATCTC	ref_5945_new	24	45	36	23	39	28	53	24	30	13
GTACTGAGCGCCAACA	ref_5945_new	14	14	21	17	20	11	15	16	16	9
TTGCCATCCATTCTCC	ref_5945_new	2	5	2	4	5	2	6	1	9	2
GGCACTACTATGGCTC	ref_5945_new	13	22	14	14	20	17	19	4	11	9
GCAGCTTTAACCCAGC	ref_5945_new	13	32	18	21	19	16	26	13	22	9
TTTCTGCTATTTTTGC	ref_5945_new	65	109	79	58	104	61	105	57	113	55
CGGACTTTTGTTGGGG	ref_5945_new	3	8	4	8	10	5	14	2	14	2
CGCCCGTCTTCGGACA	ref_5945_new	67	108	88	86	133	76	152	52	156	61
GTAATTAAGTAATACC	ref_5945_new	36	56	58	33	55	27	61	33	69	26
TGAGATTTCCGGATCG	ref_5945_new	3	3	1	1	5	3	3	3	3	1
CATTTCCAATGCCAGA	ref_5945_new	0	0	0	0	0	0	0	0	0	0
TGGCTCGACTAGATTC	ref_5945_new	7	13	14	9	19	10	14	17	23	9
GTGTGGTCCTTACTGC	ref_5945_new	7	25	9	7	10	8	17	6	15	11
TCGTACGGGGCATTAC	ref_5945_new	0	0	0	0	0	0	0	0	0	0
TGTAATCAGACGTTAA	ref_5945_new	10	16	18	10	11	5	29	9	15	14
CTCAATCTTCGCGTCA	ref_5945_new	0	2	0	0	2	0	2	0	1	1
ATAGATTTCGGTTTAC	ref_5945_new	8	14	5	7	4	5	17	3	11	4
GTCCTTTCCGGGCACC	ref_5945_new	4	0	2	2	6	1	5	4	2	1
ACGAAAAATCTTTCGT	ref_5945_new	0	0	0	0	0	0	0	0	0	0
TCTGTCTAAGGTATCC	ref_5945_new	0	0	0	0	0	0	0	0	0	0
TATCCCCCCGTGATTG	ref_5945_new	1	11	6	6	12	3	13	5	15	3
GCAACACTAGTTGATC	alt_5945_new	26	59	27	18	51	24	50	29	46	19
TTGATAGTTTAATGTT	ref_5945_new	0	0	0	0	0	0	0	0	0	0
CGCTCGGCAGGCCTCG	ref_5945_new	123	201	202	144	228	141	202	134	228	151
GCTGTCCTGCCGGCCT	ref_5945_new	19	37	32	20	39	26	42	29	36	13
AGACCTCAGCAGCTTA	ref_5945_new	5	30	5	4	35	5	40	4	52	0
CCAGGAGTGGTATGTA	ref_5945_new	2	7	3	1	7	2	9	2	7	0
GTCGGGGGCGTTTGAC	alt_2950_RC	84	71	67	74	74	58	86	64	80	80
TGTCCGCTAATTATCT	alt_2950_RC	38	46	63	38	45	46	38	45	45	50
TCAACTTGCGCTGCTG	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
CTCAAGGGGTCCGTAG	alt_2950_RC	307	351	430	282	382	296	381	304	387	290
ATCACGTTTTCCGTAA	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
TAAACGTGGTGAGTAT	alt_2950_RC	202	185	261	225	227	215	208	192	193	178
ATCTCGGATGTATAGC	alt_2950_RC	7	14	11	15	16	13	13	10	15	18
TGCTGGTGAAACCCGT	alt_2950_RC	69	57	85	52	73	68	67	63	79	49
TTCGGTATTCCCAGGC	alt_2950_RC	15	17	8	6	14	14	14	18	17	16
ATACGGGGCACTTTGC	ref_2950_RC	19	21	20	14	15	11	17	11	30	15
ATCATCAGAACCTGTT	alt_2950_RC	14	15	17	8	13	12	10	8	16	8
CTCGTTTAGGGAATTT	alt_2950_RC	7	11	15	4	12	12	11	7	19	12
TTGCTATCATCAGCAG	alt_2950_RC	9	27	20	25	13	16	19	5	26	14
CGCTCTGTATTGTGTG	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
CGAGGCGATTGAATTT	ref_2950_RC	30	36	27	23	39	25	50	33	50	26
AAACTGTTAGCACTGT	alt_2950_RC	45	85	82	69	64	45	87	58	96	75
AGGCACGCCTATACGC	alt_2950_RC	3	2	1	0	3	2	1	0	2	1
GGCTCCGCCGCATCAC	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
TTCATCTTAGGTAGGG	alt_2950_RC	4	9	4	6	8	7	6	12	14	8
GGGTATAATCTTCCGG	alt_2950_RC	49	59	68	48	53	56	44	46	55	32
TTGTAACCTGTTCCTA	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
TTCTACTATACTGGCC	alt_2950_RC	87	75	83	85	70	96	81	74	94	76
ACTTTAGGATTACAGT	alt_2950_RC	41	29	30	16	48	31	32	17	35	27
CAGGGTCAGCCCTAGT	alt_2950_RC	44	69	49	38	56	51	56	49	67	35
CCAGTCGTCGCAGTGT	alt_2950_RC	7	20	5	5	18	2	14	8	17	7
TTTGGAACATGGGGTC	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
TGGATGCAGTGTTTAA	alt_2950_RC	33	34	40	23	29	23	38	30	50	16
TTATTAACATAAGCGT	alt_2950_RC	62	84	66	56	104	49	57	63	77	64
TGCACTTTGAGAGCGT	alt_2950_RC	33	29	37	29	48	33	45	34	45	30
GATAATATTGGAGCGG	alt_2950_RC	29	21	27	25	26	19	25	28	29	21
AAACTTTATCGTTCTA	alt_2950_RC	36	33	59	44	45	37	46	45	40	34
TATGGTATGGTCGTGT	alt_2950_RC	37	33	48	40	40	29	47	30	48	26
CCTGAGCTGTGTGCGT	alt_2950_RC	23	15	32	18	15	24	33	24	32	23
TACGAGGGTCATTAAA	alt_2950_RC	21	33	48	22	34	36	40	31	38	23
CCGGGTTTATCCCTAC	alt_2950_RC	51	29	25	25	43	19	24	26	36	22
TCCACCCTTTCCGGAC	alt_2950_RC	305	318	320	313	330	269	377	296	388	273
CCGTTTCTTTGTGATT	alt_2950_RC	63	66	72	82	83	61	60	63	77	67
TTGTACATTCTTGATT	alt_2950_RC	22	31	15	14	26	16	15	19	23	19
TGGATATTTATTTGTC	alt_2950_RC	11	19	31	9	15	17	9	8	14	7
AGGTTCTTATGCTAAC	alt_2950_RC	22	15	24	25	18	20	9	19	26	19
CCTGAGGATTCTAGAA	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
CGGGAAATCTAGTTTA	alt_2950_RC	21	26	8	22	35	12	20	27	33	17
GCCGGATCGTACTCCT	alt_2950_RC	5	43	11	11	46	10	43	9	47	11
TTTTGCTTTTCCCCAG	alt_2950_RC	14	16	30	19	11	17	32	26	17	22
GCCTTGCATGCATGAG	ref_2950_RC	228	278	303	215	307	214	338	250	350	215
CAATACAAATTCCTCG	alt_2950_RC	5	3	11	3	5	4	8	6	4	4
CCTTTAGATTTCTTCA	alt_2950_RC	74	97	72	66	99	66	96	69	120	63
CAGCCCGGTTAATCTT	alt_2950_RC	13	17	16	12	13	5	27	19	25	10
TTTTCACTTCTGCGTG	alt_2950_RC	60	55	75	49	72	66	64	48	88	42
AAAAGGTTATGTCTAT	alt_2950_RC	60	80	76	76	75	50	68	47	57	64
GGCAGGGGTCCACTAC	alt_2950_RC	5	5	5	6	10	4	2	4	5	5
CCCCGCACTGGCTCTG	alt_2950_RC	36	46	57	39	35	40	29	47	44	57
CTCGGTGTGACTTTAA	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
TTTACTAGCCAGGACT	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
GGGTACAATCCCGTCG	alt_2950_RC	5	25	8	8	29	1	45	7	41	2
TAAAGGTCAGTGGCGA	alt_2950_RC	35	65	73	56	67	54	44	69	66	55
CCATGGGAACAAGGCT	alt_2950_RC	8	14	4	5	5	5	2	11	5	10
TCTAGTAGGCCAAGTC	alt_2950_RC	8	23	7	22	25	6	25	11	28	10
GTTAAGTCTAGACTGC	alt_2950_RC	0	0	0	0	0	0	0	0	0	0
TTTGACACGTTTTAAT	alt_2950_RC	68	77	94	98	84	82	87	59	96	57
GGAGTGCTTGGAAACC	alt_455_upstream	297	255	353	299	264	248	255	275	282	258
CGGCCGGTTCACTGGT	alt_455_upstream	28	24	28	42	24	20	30	24	47	32
TGTTTTAAGGCTATTT	alt_455_upstream	10	3	6	5	3	7	12	9	4	6
CGCGTTCTTAGGATTA	alt_455_upstream	17	21	15	20	14	15	18	27	10	9
ATACACATACCTTTGG	alt_455_upstream	471	593	497	425	688	390	685	412	683	390
GCCTAGGCGGCGTGTT	alt_455_upstream	56	46	69	53	48	75	57	52	54	40
ATACATTACGGAGAAA	alt_455_upstream	4	9	5	2	9	6	9	4	9	3
CCCCTGATATGCTCTG	alt_455_upstream	2	9	8	8	10	8	6	13	10	9
GATAAAATGTCCCGTG	alt_455_upstream	34	15	52	38	26	46	13	37	22	35
TCGTATGCCATGACGT	alt_455_upstream	400	319	480	398	354	381	358	378	352	316
TGTCGGTTCATAATTT	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
TATTAGGACCGTCCAG	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
TTGCAACTTTGAGTGT	alt_455_upstream	17	18	24	25	9	15	15	13	13	25
AATGGGGTTTCGTATG	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
GGTTACTGACGAATGT	alt_455_upstream	54	53	65	62	42	42	38	37	36	46
GGCAACGACTCTGAGT	alt_455_upstream	6	4	3	4	4	3	4	4	2	2
TTGGTGCTCTTGAACA	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTGCCGTCTGTC	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTCTCTGATCACC	alt_455_upstream	55	46	77	59	43	71	46	58	48	49
CGATTCACTATCCCAT	alt_455_upstream	6	3	16	9	14	13	9	13	8	8
ACCCTCCCTGTAAGCA	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCCCGTCCAAAGA	alt_455_upstream	21	25	22	24	19	17	16	25	16	16
CACGTACTCCGACAGT	alt_455_upstream	11	13	11	10	16	6	16	8	18	6
TAACTCTACCTGAAGC	alt_455_upstream	45	37	61	63	34	48	46	32	36	33
ACTTATTTTCTCCGAT	alt_455_upstream	35	22	41	43	14	35	24	24	22	36
GTTAGTCTCAGCTCGT	alt_455_upstream	75	88	109	92	70	79	84	77	84	80
ACCCTCCTGGGGTTGA	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCGTCACTGCCCC	alt_455_upstream	42	66	76	49	76	48	88	64	81	50
TAATTAATGCTGTGTC	alt_455_upstream	44	35	61	42	39	34	30	38	37	37
CTATGAGCCTCTGATT	alt_455_upstream	5	11	13	7	7	7	5	11	7	3
GGCAGGCAGTTCAGAT	alt_455_upstream	42	14	55	40	19	40	33	45	24	28
ACACTATAGATGGTTG	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
TCGACCAGATGAATGT	alt_455_upstream	34	23	48	47	21	25	22	38	33	32
CGCTTTTTTAGGTGCA	alt_455_upstream	57	63	75	54	59	61	73	70	63	53
ACGAATCCTGATCGAA	alt_455_upstream	5	9	13	8	3	9	7	7	11	8
AGTCGATCGTCAGAAC	alt_455_upstream	9	13	11	10	12	15	15	12	14	13
GTGCATATATGTATCC	alt_455_upstream	84	77	109	88	79	71	83	64	80	78
CTCGAAGACTTGGTCA	alt_455_upstream	14	23	25	18	14	23	18	19	20	11
CCGGTGTAGAACATTT	alt_455_upstream	62	38	73	44	47	48	50	49	53	59
TCAGAAACGGGTACAA	alt_455_upstream	60	38	87	65	47	66	52	59	64	60
ATCTGTCTGTTTTGGT	alt_455_upstream	110	74	112	94	60	89	66	66	53	62
CTTCTGTTATTACGGT	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
GACGTTGGTTATACCG	alt_455_upstream	3	1	1	3	1	1	1	2	0	5
GATGAGCATTGTCTTC	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
GGATCAAGCTAGTTTT	alt_455_upstream	3	10	7	16	1	8	2	8	3	6
TCTCGTTCGAGTTCCG	alt_455_upstream	24	11	34	22	13	21	20	18	16	24
CACGCCACGGATACGC	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGCTGAGACGATT	alt_455_upstream	62	29	47	49	34	54	28	43	44	37
CTACTATCCATGTTGA	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
AAACATCCCTGAGGTT	alt_455_upstream	98	73	124	76	79	114	80	76	84	86
GGGCTAATTTGGAGCC	alt_455_upstream	17	20	21	22	18	23	27	16	15	26
CTCAGGAACATTGTAC	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
TTAAAGTTAGATTGAC	alt_455_upstream	58	46	87	82	62	66	45	70	63	64
TTTTCAGAACGTCCGA	alt_455_upstream	29	12	36	27	13	28	25	17	23	36
TTGACTGGATACCCAG	alt_455_upstream	22	10	15	19	9	16	16	16	11	4
CTTGGATCTAAGGTCA	alt_455_upstream	19	13	23	18	11	18	14	16	16	9
CAATCTTAACGGTTTA	alt_455_upstream	17	5	15	10	15	17	10	11	12	11
GCCTCAAGGTCTCCGT	alt_455_upstream	9	4	12	6	6	6	6	6	8	6
CACACCCGCTCGACAA	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
GATCAGTTAGACGCTA	alt_455_upstream	18	24	26	26	20	18	17	29	36	23
CCCTTGATTCACGCAG	alt_455_upstream	50	44	62	64	43	49	50	61	49	47
TCCGGGCCGTATATGC	alt_455_upstream	37	84	26	26	86	38	91	28	76	30
CTGGGTCGCCTACCTT	alt_455_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCTGGGTTCGCTC	alt_455_upstream	66	117	60	64	154	54	137	79	156	44
GCTAAATTTTATGCGT	alt_455_upstream	217	185	254	221	155	220	197	208	172	180
CTATTGTTGTTAGATG	alt_455_upstream	18	13	23	12	20	10	22	12	14	14
CTGGTGTCCTCTTGTG	ref_5989_new	65	28	56	67	22	45	18	48	19	64
AACATGTGTGCAAATT	ref_5989_new	80	29	86	93	42	70	40	83	27	64
GTTGTACTACCACCTA	ref_5989_new	198	86	247	259	80	187	75	219	74	155
TGGCGGCGACGCTTAC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GACCGTGCTAGCAAAG	ref_5989_new	46	23	71	52	28	39	26	63	30	50
TCCTTTTCTCCATCCG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
ATGAGCCTGTTTTAAC	ref_5989_new	21	11	26	21	14	26	18	20	15	25
CACGAGGTTCTTATAT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GATGACGTAGTAAGAC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CGGGGGGAGTCCTACG	ref_5989_new	73	36	92	73	50	54	31	77	31	59
CAGCGGCTTCTTACTT	ref_5989_new	36	32	41	59	25	39	26	29	19	31
CTGTGTTTCTTGAAAC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GTAAACCAACATCGTG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TCACCTTAATGTGGCG	ref_5989_new	7	10	11	9	8	13	8	8	15	6
CTCATATTGATATCGC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CACGTCTACCCTGAGT	ref_5989_new	109	28	132	148	47	115	46	101	46	108
TCCTTCGTTCAGCGAG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TGTTAGTCCCTACCAG	ref_5989_new	19	7	31	20	9	19	4	23	6	10
CGTTCGATTTCTTACT	ref_5989_new	97	52	121	116	49	92	51	97	61	86
GGGATTTTGAGTTGAC	ref_5989_new	92	26	121	86	51	93	28	89	39	91
TCAGTTATTCTAATGG	ref_5989_new	46	30	62	64	24	66	22	39	18	43
CGACCTATTGACCTGC	ref_5989_new	99	31	106	99	48	91	48	109	57	100
TAGTTTGACTCTAGAG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AGTCTTCGCTTTATCG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
ACCGATGGCAGCCCCT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TCCCCTGAAACTCATA	ref_5989_new	15	13	22	24	8	11	12	21	8	12
GTTCTGCATCCGGTAG	ref_5989_new	73	51	94	74	45	75	43	72	38	56
TTGAGTATATAATAGA	ref_5989_new	23	12	31	26	13	29	15	23	6	25
TAATCTGGATAGTGCG	ref_5989_new	24	12	40	61	9	34	15	35	18	30
CCAATTTTGAGGGCTT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TTTTGACTCTCAATGA	ref_5989_new	143	52	170	131	53	118	60	114	54	119
GTACTCTTCGCTCTCG	ref_5989_new	26	23	38	32	11	22	17	29	16	26
ATAATCTTGATCCTTG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CACTCTGTCCGTGTAT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CTAACCCAGAGTTGAG	ref_5989_new	19	12	20	32	12	22	7	22	22	21
TCGATACTAGGATGAC	ref_5989_new	24	12	29	36	15	28	13	24	7	23
ATCTGAGTAAGCATAC	ref_5989_new	70	22	69	65	30	54	18	62	35	49
CTTTCGTATTCTGGTC	ref_5989_new	788	345	923	940	346	733	344	838	331	706
ATCAAAGTTCCACCCG	ref_5989_new	249	102	296	291	110	224	112	227	116	215
CATGTCCCTTTTCCGT	ref_5989_new	86	55	117	105	47	89	45	99	52	91
TTGCTTTATTCACCAG	ref_5989_new	49	19	48	58	16	42	20	43	20	34
TTCATATGAACGCTCT	ref_5989_new	36	19	68	42	23	46	16	47	26	36
TTGGTCTCATTACTCC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CAGTTACTTCCACCGC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GGAGCCCATGCTTTGA	ref_5989_new	96	24	106	68	45	86	29	70	26	84
GGAACATAGGAGCGAT	ref_5989_new	9	3	18	17	4	12	5	13	8	5
GCTGTTGTCGATTACC	ref_5989_new	41	15	43	25	16	34	16	31	16	28
CGAGAAATTTTCAGTT	ref_5989_new	317	125	375	363	117	310	117	299	121	300
CCATGCCGCTGCTTAT	ref_5989_new	7	7	5	5	9	11	7	6	3	3
GGGTATGGGACGCACG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GGGTCGCTTTTGACTA	ref_5989_new	11	12	21	8	9	14	3	6	10	12
CTATATCGATTACTGT	ref_5989_new	65	25	56	73	24	50	24	56	36	70
GTCGGCCAAGCGATTC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TTCTGGGAGAACCGGA	ref_5989_new	85	48	99	103	60	84	41	57	48	78
GTGTCTTTTTAAATCA	ref_5989_new	98	37	117	117	45	96	54	124	54	81
GTATCTCTTTTATCCA	ref_5989_new	93	31	112	108	28	79	35	88	39	84
CATTGTTTTATAATGT	ref_5989_new	27	7	26	33	9	27	17	23	9	26
TAGGTTTGTTTAGATG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GATATTCTGCGATTTA	ref_5989_new	87	21	138	105	51	108	43	89	41	108
TCAGGCGCACATGTAT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AATGATTGGCGAGGAA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AAACTTACCGCCAAGG	ref_5989_new	121	67	165	131	59	102	57	112	52	95
TCTGTCGAGGTAGAGC	ref_5989_new	82	22	94	59	26	59	38	70	46	58
GTCGTAACATTTATGG	ref_5989_new	70	32	88	95	27	78	29	68	32	77
AGCCTTGCGATGGGCC	ref_5989_new	33	16	33	34	18	25	9	18	15	19
TGCCCTGTAATCATTG	ref_5989_new	25	12	20	22	12	19	7	22	10	23
ATCGTAAGGTTTTCTG	ref_5989_new	59	31	78	60	22	66	23	72	28	48
TCGTGCAGATTTCTCT	ref_5989_new	47	15	51	51	15	40	15	36	32	29
CACAACTGTTCTTGTC	ref_5989_new	194	106	250	235	89	200	111	200	98	172
GTTATCCTATAGGGTC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AGCATTTTTATGAGGG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GCTAACTCCACACAAC	ref_5989_new	28	14	37	32	13	34	13	46	15	27
TCGGATATCTTGTCGT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TGTTATGGTAAACCCC	ref_5989_new	38	19	64	48	22	35	20	50	23	27
GTCTTCTTTGTAGGGT	ref_5989_new	15	6	22	12	5	9	3	9	2	7
GGCACTATGCTGCGAT	ref_5989_new	74	23	84	95	42	72	36	84	38	63
TACTTACTTCTTACAT	ref_5989_new	158	59	203	152	100	164	70	145	89	145
GAATTTATTATAGCTC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TTATCCCGTCCATTTA	ref_5989_new	91	43	120	97	33	105	45	92	52	82
TATTTATACCGGATTT	ref_5989_new	75	17	67	57	19	46	21	68	16	39
GCAGTATCGTATACAA	ref_5989_new	38	2	30	25	15	21	9	31	8	33
AGCTGCCGTAACCGTC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GGGTCTGACGTTGGAA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AATTTTTTGGACATAT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TCTTTTGCAAATTATT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AGAGGAGCTTCTTATG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TCTCGATCAATTGCCT	ref_5989_new	282	115	286	272	86	219	136	240	101	176
TTATGATCGTACATGT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TGAAGCGGTTCTTGCC	ref_5989_new	275	120	336	312	124	247	119	252	113	228
TTTCTTTTCTTGACGG	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CGTGAGAATAGCTTCA	ref_5989_new	545	199	680	653	200	544	224	556	246	522
AGCACAAGCCTATACC	ref_5989_new	26	16	39	27	10	15	13	18	9	17
AGCTTTTTCGCGCAAG	ref_5989_new	189	76	226	236	105	191	72	209	73	182
TCCATTTTCAAGCAAG	ref_5989_new	27	19	33	28	11	23	15	19	8	29
GGCTAAGTTTTTCGCC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
ATTTAGGTTTTATGCG	ref_5989_new	15	4	13	23	8	11	2	11	5	14
CATACCTAGGTTTAGA	ref_5989_new	97	32	95	85	39	81	37	78	33	68
CCCCCCGACAGGGTGC	ref_5989_new	10	14	13	9	7	7	3	13	13	9
ACCAGATTGGCCACGA	ref_5989_new	35	15	44	28	11	19	22	24	15	32
TCTGGTGTTCTTTGCC	ref_5989_new	17	8	18	16	7	12	7	12	6	12
TACCCGGTCGGCCCGG	ref_5989_new	118	70	139	135	72	100	94	134	76	118
TCTGGTGCACGGATGG	ref_5989_new	44	16	58	49	29	44	30	54	14	43
TGCCGAACGATATCCG	ref_5989_new	124	66	156	130	69	125	69	122	67	121
AAGTGCGCTAGTTCGA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AATCTTTCGGTTAACG	ref_5989_new	33	16	32	36	6	29	18	22	14	19
CTGGGTTCTGGATACA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CATCGAATGTTAGGTA	ref_5989_new	222	112	277	251	87	255	116	262	91	213
GGGGCTTGCAAGCACC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TCCACGGGTTGTCACA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CAGTCCTTTTGCCAGA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TCACACGATACAGGCG	ref_5989_new	24	7	39	46	11	38	10	38	16	34
TACCCGGACCGCATCA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TGGTTGCCCGCGTACA	ref_5989_new	58	33	96	78	27	49	28	66	27	64
GTCCTTCTGGTACAAC	ref_5989_new	55	16	62	82	16	55	26	47	15	50
CTTTAGGCCTGCGCTT	ref_5989_new	0	0	0	0	0	0	0	0	0	0
CTTTTAACACACAGCC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
AGTTTTTCGTTGGCGA	ref_5989_new	0	0	0	0	0	0	0	0	0	0
GGACCAGTATGAAACT	ref_5989_new	27	4	20	20	5	19	14	23	8	15
TTTACGCTAACAATAC	ref_5989_new	0	0	0	0	0	0	0	0	0	0
TAGGGCAGTGCGTTAT	ref_2654_missing	5	1	3	3	14	7	12	1	14	7
TATGTTTTTTTAATGT	ref_2654_missing	7	7	5	6	6	3	8	0	7	2
TAGGTTCTTTGGCATT	ref_2654_missing	8	19	15	14	6	9	13	8	21	13
ACATAGGTCATATGGG	ref_2654_missing	0	0	0	0	1	0	1	0	0	0
CTCGGCTTCGCCTAAT	ref_2654_missing	67	127	80	77	131	63	136	56	145	60
ATTCTAGGGGGTCGGC	ref_2654_missing	12	10	9	11	26	13	17	4	24	9
CTCGCGGCCCCCTCAA	ref_2654_missing	36	66	48	30	73	36	77	35	73	40
TGGATTCGATGATTAT	ref_2654_missing	2	11	7	2	3	6	9	0	7	3
GTTGGAGTCTTAGAAC	ref_2654_missing	4	5	4	1	4	0	7	1	6	3
GTGAATTTCATCGAGA	ref_2654_missing	18	24	27	12	40	25	25	25	34	17
GTCGTCAGAGTGCAAT	ref_2654_missing	2	15	3	0	14	1	11	3	15	2
GGTTTATTCCCTTGAG	ref_2654_missing	13	46	17	23	41	18	44	16	40	19
TTTTCTTTTAGATTGT	ref_2654_missing	22	26	19	11	25	18	21	12	26	11
ATGTTTGTTTGGGTTT	ref_2654_missing	14	33	21	20	31	26	24	23	42	18
TATTGTGCGCTTCACT	ref_2654_missing	18	21	15	27	25	14	40	21	31	12
GTGTTTCAAGTATCTT	ref_2654_missing	11	23	11	14	28	17	21	11	28	13
ATCTCTGCGTTAGCGC	ref_2654_missing	4	13	3	4	4	4	11	2	4	6
TTTAAGAATGCGCTGG	ref_2654_missing	16	22	10	15	15	10	27	4	12	14
CTGTAAATTCATGGAA	ref_2654_missing	28	61	19	32	56	25	47	17	66	16
TGGTTCATCCAGAACC	ref_2654_missing	0	0	0	0	3	0	2	2	0	0
TCTCGATCTGCCCTGG	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TGACCTCACGAACTCC	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
GGAAGGTTCCGGCAGC	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
CTTTCCGCTCTTACGT	ref_2654_missing	11	29	15	19	29	11	26	18	29	21
ACACAAGTGCCGATGG	ref_2654_missing	3	14	5	6	20	4	8	7	12	5
CTGGAATAGGGTTTTG	ref_2654_missing	17	44	33	14	53	16	43	18	49	14
TTTTGCCATTACTTGG	ref_2654_missing	10	21	16	13	17	5	23	12	23	5
GACATGCTTCACTATG	ref_2654_missing	10	25	10	13	20	11	24	11	22	8
TTTTACGGAATGAGAT	ref_2654_missing	36	59	27	33	44	30	65	16	51	25
TTTATGAGCTTTAAGT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
ACAATTTTCGTGTCCC	ref_2654_missing	8	11	7	6	11	7	7	4	17	6
CCCGGCGTCAGACTCG	ref_2654_missing	1	5	0	0	5	1	2	0	4	1
AGCAAAATATTAGTAT	ref_2654_missing	6	8	5	2	13	6	10	2	6	3
CGGCGTCTTTGGTATT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
AAGAAGTTGAGGTATT	ref_2654_missing	5	23	9	7	25	8	15	11	20	9
TCCACGTTTAATACCC	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TTACAACTAATACTTG	ref_2654_missing	35	45	45	34	62	35	65	26	62	34
ACTCTTGACCATTATT	ref_2654_missing	19	64	37	30	57	27	38	24	55	25
GTTCTCCAGCCGCTCG	ref_2654_missing	10	22	4	6	11	6	10	7	19	5
CGGGTGCCGAATAGTA	ref_2654_missing	8	33	20	14	21	14	26	14	39	7
CAAATTGGCGAGTGCG	ref_2654_missing	0	0	1	1	0	0	0	0	1	0
TTGATAGTCGGGAGGC	ref_2654_missing	33	36	19	26	43	21	29	28	52	20
CAACTTTATGCATAGC	ref_2654_missing	7	15	11	8	32	13	25	13	41	13
AGATTCGAATTGCAGT	ref_2654_missing	1	2	1	0	0	1	7	0	0	1
TCACCCTCTACTCGGG	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
CCGGTGATCTCATATG	ref_2654_missing	12	17	15	9	9	10	8	8	13	8
GGTCGGATCTCAGGAC	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
ATGAGGTATTTCATTT	ref_2654_missing	25	51	41	25	47	26	57	22	43	29
AGTCAAGTCTTGATCA	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
ATAGACATATGTGTCA	ref_2654_missing	17	52	30	25	68	21	72	24	42	22
CAGCGTGGCTCTCTTG	ref_2654_missing	4	1	5	3	7	2	7	6	4	4
TTTGCAAGGCTATCCC	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
ATCTCGTGCAAACGCG	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TCAGGGATGCCTTTAC	ref_2654_missing	39	77	44	43	89	32	71	36	90	47
GGTACTTGACTGGCGG	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
ATAGATGATATACATG	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTGTAATAAGCT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
GTCTTGGAGTTGTATT	ref_2654_missing	41	90	41	39	79	41	106	47	78	40
TAGTTTCGAGCTTTCT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
GCTACTATCAGGTCTT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
GGGACGATTTTGCCCA	ref_2654_missing	6	15	17	9	18	7	9	5	21	8
AGGGTGATCGTGAGCT	ref_2654_missing	6	27	22	10	33	19	14	14	22	11
CCTAGTGTGTCTTCGG	ref_2654_missing	4	9	8	6	6	6	11	0	10	6
GCTTACCCTGACCTAT	ref_2654_missing	6	12	12	5	27	7	23	3	25	2
TAGTTGTATGTTAGGC	ref_2654_missing	14	32	16	12	20	11	16	4	35	14
ATACAGATGTGCCACT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
ATCATACCCGCTAAAG	ref_2654_missing	3	22	6	3	25	7	20	8	17	7
ACCCCCAAGGGTCTCA	ref_2654_missing	13	20	17	23	17	16	38	10	34	15
TCGCTCTCAGGCATCA	ref_2654_missing	5	13	3	6	7	7	15	8	9	2
AGTATGAAATTCCCCA	ref_2654_missing	0	1	1	1	0	1	1	0	2	0
TGGCTATGTAGTAGAT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
GTTGCTAAACGCGAAG	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TGCGAGCAATTCAACC	ref_2654_missing	34	82	36	38	88	38	81	42	72	34
ATTTGCCATGTAGAGT	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
AGGGTTTTACTTCGTC	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TCATTCGTAGTCACAG	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TCGTACCAACAGTTGA	ref_2654_missing	0	0	0	0	0	0	0	0	0	0
TCTTGACCGGTACACC	ref_2654_missing	5	20	6	9	25	10	38	13	20	8
CTCGTCCGACATCGAG	ref_1416_upstream	46	78	63	46	74	52	83	55	70	51
CACAATCTTTTCCTAC	ref_1416_upstream	16	18	21	15	19	11	11	8	19	17
CAAGAATACGGGACTT	ref_1416_upstream	40	45	26	25	33	45	45	18	53	29
GCTGGTGAAGTATTAT	ref_1416_upstream	5	12	15	10	17	11	13	5	13	4
ACACTCCATTGCGGCA	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTGGGAACGTCTC	ref_1416_upstream	0	15	6	0	3	2	6	1	5	3
CTCTTCTTACGTTTAC	ref_1416_upstream	13	27	25	19	23	15	21	15	37	24
TTTCTTTTTTCATTTG	ref_1416_upstream	10	16	15	10	16	11	16	9	19	18
CGTAGGCGTACTCGTT	ref_1416_upstream	81	105	96	71	131	68	148	81	134	70
GTGCGCCTGTTATCGA	ref_1416_upstream	18	20	18	12	15	13	31	7	17	8
AATATTTCTAGTTTAA	ref_1416_upstream	12	15	21	12	13	4	9	6	23	7
TGCATCAACTACCGTC	ref_1416_upstream	34	64	46	30	68	26	72	25	90	18
TCTCGGTGACAAGGCT	ref_1416_upstream	31	57	21	23	61	17	56	14	63	18
TAAATCCGATTTCTAA	ref_1416_upstream	241	333	281	217	296	198	319	218	305	188
CCGCAGATATATGTCC	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCCGGTTGGTTAC	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
GGGAATGTCGGCGATG	ref_1416_upstream	80	79	74	70	87	74	85	73	96	63
TCTGGGATGATTTAGC	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGTAATCCTTCAT	ref_1416_upstream	19	26	39	29	31	23	38	31	44	28
GGGGGTACGCCGAAAA	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
CACTAGGACTTGGTAA	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCACGTTTTAGAA	ref_1416_upstream	73	130	111	102	137	99	141	92	182	96
GTCTTGCCGCATTACT	ref_1416_upstream	21	44	26	24	36	26	28	16	43	18
AGAGGCTATTGCTCAC	ref_1416_upstream	83	123	81	82	120	86	151	75	134	86
GGGTAATGTCACGAGT	ref_1416_upstream	12	21	25	17	19	14	16	19	18	12
ACGTACATCGCACTGG	ref_1416_upstream	9	18	6	5	11	2	11	7	15	4
TCGTCGCGCATGGTTT	alt_1416_upstream	51	54	50	41	50	52	58	40	44	41
TTGCCGTCTGGGTACT	ref_1416_upstream	43	80	77	66	83	60	78	42	86	52
TTGTATTTCAGGAGGG	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
CACGACTGGAGCAATC	ref_1416_upstream	25	56	40	42	59	31	58	27	62	31
AGCGCGTACAGGACCC	ref_1416_upstream	5	3	2	3	0	6	3	1	7	2
ACATCCTGACTGTACA	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
TACCCCCCAAATGAGG	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCGAAGGCGGGTA	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGTGAGCAATCCT	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTGGTCTTGATTC	ref_1416_upstream	6	9	4	8	6	2	11	5	8	8
CATTCAGTTCGTAATT	ref_1416_upstream	18	29	25	20	24	14	25	13	33	14
ATTGATAGAGGACATT	ref_1416_upstream	2	7	8	3	2	1	3	3	11	2
GGTGTAATGATATTAA	ref_1416_upstream	86	122	96	88	107	71	147	63	133	68
ACAAGCTTACTGCTCG	alt_1416_upstream	8	23	22	14	17	14	23	12	23	15
TTTCACTCTGGGCTAT	ref_1416_upstream	47	80	57	55	70	56	92	35	81	43
CTTGTTATTGGTCGTT	ref_1416_upstream	61	101	71	74	88	55	89	61	97	67
AGAGGTTCGTTTATGG	ref_1416_upstream	2	10	4	4	11	7	11	4	8	4
GGGATTACCGGGAGCC	ref_1416_upstream	4	5	3	3	7	0	2	5	10	4
CCCTGGATTATCTAAT	ref_1416_upstream	35	47	38	35	61	30	42	30	43	24
CTCCTTTACTGTGTAT	ref_1416_upstream	18	64	39	34	53	16	36	22	56	19
GATGGTTGTTCTCAAG	alt_1416_upstream	18	57	36	26	38	20	39	17	41	17
ACGTATGTACGCTGCG	ref_1416_upstream	13	45	16	24	55	15	61	30	60	25
CCGCTGATAAGGGAAA	ref_1416_upstream	54	136	58	51	136	36	116	50	150	62
TACCGTCGGTGGTTGT	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
GGCCGAACCGTTATTC	ref_1416_upstream	85	111	98	69	96	60	117	70	141	56
TTTGGCGCAAGGTGGT	ref_1416_upstream	60	94	70	63	121	72	128	59	137	75
GTTGTTCAATTAATCG	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTGTGTGAATTT	ref_1416_upstream	94	167	106	93	178	107	223	64	180	90
TTGCGTACTCCGAACG	ref_1416_upstream	39	74	45	32	60	27	66	34	80	43
TCTTGCCCTGGACGGG	ref_1416_upstream	27	28	35	27	37	13	35	15	41	24
ACCTACTCTTGAAGGC	alt_1416_upstream	450	743	501	460	787	439	795	413	797	386
TGGTTTTACTCAATGG	ref_1416_upstream	24	68	35	23	42	24	71	27	62	33
TAAATCTACCGCCTAA	ref_1416_upstream	22	17	26	12	33	17	10	17	30	13
TTCCGCCATAACAATT	ref_1416_upstream	8	12	4	12	4	2	6	0	13	2
GACAAAGACCCAAGCA	ref_1416_upstream	73	77	61	53	70	45	78	41	93	41
CCGTGTTGTTGCGCAA	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
ATCATTGTTGCTGTGC	ref_1416_upstream	1	2	2	3	5	2	4	4	2	1
ACGAAGTTTGAAGTTC	ref_1416_upstream	43	83	78	57	87	54	89	57	86	50
GTTTGGTGCAGTCCGT	ref_1416_upstream	59	69	57	57	75	52	78	52	88	51
TCATGTCATCTTCTGT	ref_1416_upstream	40	47	54	48	66	50	47	47	54	41
AAGTGAGCGCTTCGAC	ref_1416_upstream	6	7	6	0	6	7	6	2	8	2
TCGAATTGAACCTAAC	ref_1416_upstream	15	29	16	18	27	15	29	5	43	19
TTGTCTTATGATAGGG	ref_1416_upstream	39	58	66	35	79	59	71	47	61	45
AGCTTCACTTTAGTCT	ref_1416_upstream	65	95	57	55	113	64	104	60	135	54
TCCGTTTTCCCTCCTA	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGGCATCGTTCAT	ref_1416_upstream	17	30	22	13	23	11	25	14	31	10
CTTACCTCTCACTATA	ref_1416_upstream	11	155	19	16	147	22	146	13	166	11
AGCAAACCGCCCTATG	ref_1416_upstream	91	155	113	91	184	82	142	84	173	87
TGCGGCCCTTGGAACG	ref_1416_upstream	11	23	14	23	17	11	12	5	15	15
AATTAAGTGTTTCGAG	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
TATTTCATGTACCACT	ref_1416_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTTGTGATTTTGT	ref_1416_upstream	12	14	17	12	15	7	19	13	15	7
TGATTGGATTTGCCTT	ref_1416_upstream	41	63	65	39	70	46	66	57	73	40
TGAATACCTTTACCTC	ref_1416_upstream	29	31	33	21	24	19	37	16	47	17
CAAGCGTGCGTTAAAG	ref_1416_upstream	40	62	59	46	69	38	69	44	73	44
TGAACCAGTTCGCAGG	ref_1416_upstream	41	62	50	43	69	36	79	31	79	28
TTTCATAGTGCAAGTT	ref_1416_upstream	23	52	28	24	46	24	37	37	35	25
CATGGTCACGCATTTT	ref_1416_upstream	10	15	15	13	13	17	11	11	12	15
CGTATGGTGTTATAGT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCGGTTATTTAGT	alt_3416_upstream	38	19	26	31	22	28	24	22	26	21
CTAAATTCACGCGCCG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCTCCTTGAACAG	alt_3416_upstream	37	22	34	36	36	29	25	31	36	30
ATGTGTTCAGTTAATT	alt_3416_upstream	15	14	17	14	18	15	21	16	15	17
GGCATTCATTTATTAG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CGATTGCACTATTTCC	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGGTGTTCGTTGCGTT	alt_3416_upstream	3	6	8	6	2	3	3	8	6	1
TGGTCCCCCCAGTCGT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTTCCAAGCGTTA	alt_3416_upstream	6	12	11	13	6	4	10	8	11	3
TTGGTGCAGGCATGGT	alt_3416_upstream	23	37	50	34	53	41	34	32	40	32
CGAACTGTGTCACAGC	alt_3416_upstream	13	14	17	18	14	15	20	13	17	13
TCGTCTTATCTCTCCT	alt_3416_upstream	130	100	145	123	102	98	97	118	133	130
CACCTTTTTTACACAG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTAGGCCAGAAC	alt_3416_upstream	11	8	15	6	8	9	15	16	14	4
TTCCTGGGAACTCCTA	alt_3416_upstream	46	35	48	37	27	32	52	40	41	29
GATTTATTTTTTCTAT	alt_3416_upstream	84	73	71	71	73	58	84	54	82	61
TAATTTTAAGCATATA	alt_3416_upstream	0	2	0	0	0	0	1	0	4	3
TGTTATGTGCAGGGCC	alt_3416_upstream	33	30	37	28	26	29	37	21	35	34
ACCTGCTGTTCGTCGA	alt_3416_upstream	1	3	6	2	6	3	9	4	4	3
TAAACGGAGCGATGCT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCGTATCCCACAA	alt_3416_upstream	9	5	8	17	11	14	22	17	9	8
CCGCAGCCGTAAAAGT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CGGACATCGATATGAG	alt_3416_upstream	6	15	7	8	16	11	9	11	7	6
CTTCGATCTTTACTCC	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTCCTCCCGACTT	alt_3416_upstream	32	33	37	47	48	29	34	46	46	27
GTTGTGCCCCTTTACC	alt_3416_upstream	30	22	16	20	22	14	24	12	25	18
CTCCCCTGCACGAATC	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GATTAACTTACGTATT	alt_3416_upstream	11	13	8	7	4	9	5	8	4	7
TCGTAGTTGCTTCAGA	alt_3416_upstream	13	20	30	22	32	37	18	20	20	22
AATCCTAATCGCTCCT	alt_3416_upstream	33	43	45	51	41	54	39	33	35	26
CGAATCCAGTACGAAT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTCCACACGGCC	alt_3416_upstream	6	16	11	10	10	2	6	5	9	10
CATTGACCTGTACTTA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTTATAGTTTTCG	alt_3416_upstream	14	20	11	12	12	13	13	9	14	15
TGAAACATGTTTTCAC	alt_3416_upstream	23	29	29	24	32	17	31	21	25	15
GACAAGACTTTCGCGT	alt_3416_upstream	26	18	23	17	23	16	31	15	17	8
TTTTTAGCGACGCGTT	alt_3416_upstream	107	98	128	113	112	105	104	135	114	92
GTCCTGGGTTGTATTG	alt_3416_upstream	50	49	73	62	59	49	51	55	56	49
TCATCGTCATATGCCT	alt_3416_upstream	20	31	24	21	30	22	22	22	28	19
CCAGCGAGCGTCTGCG	alt_3416_upstream	21	25	27	27	23	19	30	28	32	16
TTTTATGGCCTCTATT	alt_3416_upstream	6	5	3	10	7	3	9	10	8	11
CGACTCTCGGGGTATC	alt_3416_upstream	28	23	39	28	24	39	34	18	39	35
TACTGTGTTCCTGGTG	alt_3416_upstream	24	25	26	23	34	13	23	14	26	11
ATTCTAGCGATCCGGT	alt_3416_upstream	19	25	24	12	14	17	14	19	26	12
AATCAGGGCTCTAGAT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GTAACTCATACTGAGT	alt_3416_upstream	8	5	8	5	12	6	10	4	7	7
GTTGCCTAAAGGGACG	alt_3416_upstream	23	28	27	25	26	29	27	24	29	17
TAAACGTGGACGTGGG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTTCGGGGTTCGT	alt_3416_upstream	16	23	8	17	32	22	12	14	26	8
ATTTCTCTCTGTCTTC	alt_3416_upstream	4	1	6	9	7	18	6	6	5	5
GGAATTTCCCGCTCCA	alt_3416_upstream	23	30	35	21	23	18	28	24	28	25
GTGAAGTACAGGCCCG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTTATGGTACGAG	alt_3416_upstream	7	9	8	10	18	11	7	11	7	5
ATTTTAGCGACGCGTT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCATAGTTCCTGT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTGTCATCTTGTA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCGATCGCTACCC	alt_3416_upstream	4	1	5	3	1	3	6	2	3	3
GGCGTGGGTGTGCTTC	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
AACGCATATTCTATAG	alt_3416_upstream	16	11	10	11	5	13	13	7	15	10
GACTTCCCGTAGAGCT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGTCAGACATAG	alt_3416_upstream	11	10	19	13	10	7	13	12	11	14
AAATTAAGAGAGCGCA	alt_3416_upstream	25	18	33	23	18	19	18	19	20	22
GTCTATGATTGCTTTG	alt_3416_upstream	9	7	3	11	10	11	16	5	12	4
ATTACCGTTGTTCTTA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TGTCATGGTATAGTTC	alt_3416_upstream	6	6	11	11	7	5	5	10	6	5
TTGCGGTGTTTCTCGA	alt_3416_upstream	1	4	1	1	2	4	1	5	3	0
AAGACATCACGGTAAG	alt_3416_upstream	37	36	41	31	24	35	30	22	36	17
CGATTCACTCCTCGAT	alt_3416_upstream	98	95	68	63	90	61	82	62	90	48
TGTACAGATTGGATGG	alt_3416_upstream	49	36	38	36	36	55	38	29	61	22
CCTAATGGTCGGTTCT	alt_3416_upstream	12	5	2	7	16	9	8	9	5	3
TGTCGTGTGCAAATGC	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAGCATTCCATTC	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GTCTACTATTTTACTA	alt_3416_upstream	19	17	32	21	27	28	27	18	16	12
TTGTAATCAGGTCTCT	alt_3416_upstream	10	4	7	9	10	18	11	13	4	7
TAGCAACCCGGTTTTA	alt_3416_upstream	18	5	20	11	6	14	6	8	11	7
CCTTCATGAACCTTCA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCGGAGAAGAACA	alt_3416_upstream	11	10	16	19	11	16	18	12	12	5
TGTGCACCACTGAATG	alt_3416_upstream	111	90	109	82	131	117	105	95	123	76
TACTGCGGGATTGAGA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CTACCTCCAGTGTTCG	alt_3416_upstream	52	57	45	37	39	41	52	34	68	32
TGCATCACCGCATACC	alt_3416_upstream	35	34	49	37	42	53	69	48	42	33
GCCTATACCTATAAGC	alt_3416_upstream	11	14	17	18	8	15	16	13	23	13
ACCCCCTGCGAGGCGT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TATTCTCTTCGCAATG	alt_3416_upstream	17	18	37	22	25	14	9	23	27	22
ATTGGGCTGGTGCGCG	alt_3416_upstream	17	15	14	14	21	10	14	12	13	5
TGAGTACTTCCTTCGA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GCATAAACGTGTTTCA	alt_3416_upstream	28	30	41	27	18	34	30	23	26	25
TTCCTGAAGTGTTGCT	alt_3416_upstream	86	79	110	83	98	67	93	65	102	70
AGACATTGGTCATCGT	alt_3416_upstream	1	1	2	2	4	5	6	2	2	0
CAGATGGTCCCCATTC	alt_3416_upstream	37	42	36	28	27	37	25	26	24	26
CGGATGACCGGACTAG	alt_3416_upstream	5	9	17	13	9	8	7	8	24	15
CTTGTCTCTCACATCG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTAGGTTTTTGCA	alt_3416_upstream	12	11	14	13	13	7	14	7	17	6
TGGACTTCTTCATATC	alt_3416_upstream	90	75	113	124	84	100	87	68	88	96
CTTGTGTCCCGGTAAG	alt_3416_upstream	1	1	4	1	2	1	1	0	4	2
CTACACAGGAATTTGA	alt_3416_upstream	16	23	16	13	14	16	13	24	17	11
ATGTTAACAGAGCGAG	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
TACGGAGAACTAGGGC	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGCGCCTTTTGTCGTT	alt_3416_upstream	4	3	11	6	22	6	12	3	11	10
TCGTTAATCATCTGCC	alt_3416_upstream	1	0	1	1	0	2	0	1	0	0
CCTTGGCTCGAGCTCA	alt_3416_upstream	38	25	42	30	36	29	30	32	43	27
GATTTTAGCGGCACCG	alt_3416_upstream	47	43	41	30	46	28	36	40	38	27
AGACCGTCAGGATGGC	alt_3416_upstream	22	18	34	26	14	26	22	27	15	19
ATCCTCGTACTACCCG	alt_3416_upstream	12	12	15	8	6	5	11	8	13	11
TATGCTGTTTAATTCC	alt_3416_upstream	22	15	24	28	15	13	12	14	23	17
TTTGTTAAGGCTGGGG	alt_3416_upstream	8	23	13	13	12	12	5	10	14	15
TGGTATTGAGGGCAGC	alt_3416_upstream	4	2	6	6	8	12	10	7	3	4
GTTTGCTTCGCGAAGT	alt_3416_upstream	31	29	41	39	40	37	40	33	20	22
TCGTTTCTAAGCTGCA	alt_3416_upstream	20	15	19	19	21	19	23	15	11	19
GAATGCAATGCGAGAC	alt_3416_upstream	8	12	20	14	26	16	10	12	19	10
CTTATGCGTCGCGTTT	alt_3416_upstream	102	89	86	66	84	84	71	83	92	65
AATTTATCGTTTGGAA	alt_3416_upstream	56	41	62	42	44	50	51	41	58	45
TAGGGAGGCCCTCTGT	alt_3416_upstream	12	13	15	18	15	17	18	21	13	10
ATTCATTAGGGCCTGT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGTACTTAGGGTC	alt_3416_upstream	8	5	11	2	7	10	4	8	12	11
CCGACAGCATGAACCA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTGAAGTGTTGCT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAACTTTTGGTTT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
AAGATACTGGAGCCTT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTTGTTATAGATG	alt_3416_upstream	18	13	26	21	18	16	16	19	23	15
TCAACGTGTCTATTCA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCATTCGGAGCG	alt_3416_upstream	1	1	0	1	2	3	1	3	0	2
GTAGCACTGGTCTAGA	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
CCTATTAGCAGCCGAT	alt_3416_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGACAGTTCGTAC	alt_3416_upstream	66	88	99	75	89	78	90	82	83	64
TCATATTCGTCATCTG	alt_3416_upstream	14	5	16	13	13	16	15	19	24	13
TCCAACCGCCGTAGCG	ref_2989_reverse	2	6	8	0	5	4	3	1	2	0
CCCCTGTAGAGCGTAG	ref_2989_reverse	35	57	46	36	51	31	38	30	33	32
TCACGAGAGCATTTAA	ref_2989_reverse	25	27	23	26	26	23	30	26	22	21
CATTCGAAACAGGTTA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTTCCACCTCTC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTTCACAGCAATT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CAATACCCGCCGGATA	ref_2989_reverse	13	5	3	3	12	6	21	7	6	7
CGAGAGAGCCTTGGTA	ref_2989_reverse	19	25	29	33	25	21	29	23	26	22
ATAGAGGCGTCTTTGT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTAATGTTTCTG	ref_2989_reverse	5	3	5	3	4	6	12	4	4	5
GCCTTAACACGACGAG	ref_2989_reverse	7	13	12	11	7	16	9	5	7	6
CTATCAAGGGCAACTC	ref_2989_reverse	35	42	46	43	39	28	36	38	33	39
CTAATCATGGTCACTG	ref_2989_reverse	67	72	99	67	80	84	61	67	71	56
TCGATACTACTTTTTT	ref_2989_reverse	7	4	10	9	7	5	7	5	12	7
TTGACTTGGATTTAAT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
ACCTCGGTTCCATTAA	ref_2989_reverse	10	8	13	5	14	9	5	8	11	4
AGTGTTGGTAGGCCTA	ref_2989_reverse	14	15	18	10	10	8	11	19	6	9
GGTGTACTTAGCGGTC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TCATTTCCTGGCTGGA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATAAAAAGTGCACTAC	ref_2989_reverse	11	11	14	8	6	9	16	10	13	12
TCTGGTTCGCTTTTTT	ref_2989_reverse	17	24	24	19	31	15	33	19	34	24
AGCCTTTCGTCACCGG	ref_2989_reverse	21	18	34	20	29	23	37	27	32	19
GCATGGGGATCAGAAG	ref_2989_reverse	19	14	25	14	28	19	22	23	18	13
TTCAGCTTCTCACCAT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
GGGTATTAGAAAAGGG	ref_2989_reverse	38	22	21	21	13	30	26	24	19	32
GTTACCCACCTTAGCC	ref_2989_reverse	54	70	66	65	79	54	102	62	122	69
CATGGTACTCGGCTCA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCTAGCGCTCGGT	ref_2989_reverse	171	201	233	205	220	205	202	175	226	217
TGTACACCCACAGCAA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCAGGTCCTAGTG	ref_2989_reverse	11	41	24	6	40	18	45	15	50	13
AGCGGACGTACTTCGT	ref_2989_reverse	50	42	49	43	33	26	39	39	52	28
TTCGGACGGCAGATTC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
AATAGAGTCCCTCCAG	ref_2989_reverse	13	5	8	8	11	5	7	9	6	1
ATCTGGTAATTCGAGT	ref_2989_reverse	2	3	1	0	4	0	0	0	0	2
CGCTTAGGCGCTACAC	ref_2989_reverse	67	47	59	64	52	53	51	59	61	54
TCCGTTGTGCAAGCTT	ref_2989_reverse	11	17	8	5	7	13	13	5	24	8
TTCCTTGCTACTGAAT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTACCTTTAGTAT	ref_2989_reverse	10	18	10	15	12	17	14	6	13	12
AATACATCCTTTACTA	ref_2989_reverse	13	8	15	9	10	6	6	8	9	16
TTCTGAAGCGCTGGTC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CTTCACTGCTCTTGGA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAAGCTTCCGTCA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGTAGGTTCTCTA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTCCAACGACATTTCA	ref_2989_reverse	22	20	15	26	24	20	20	15	17	19
TACTCTACCTTGCGGT	ref_2989_reverse	6	6	11	3	9	5	8	10	6	3
CTCGTTCGTACTGGTG	ref_2989_reverse	51	54	86	73	66	67	66	48	81	46
GCTTCGGTCATCGAGT	ref_2989_reverse	18	14	18	12	10	14	11	11	10	10
TCTTCGGTGTAGTGGC	ref_2989_reverse	2	0	4	0	1	1	0	1	1	3
TTATCTTAACACTCCA	ref_2989_reverse	21	39	26	23	32	14	41	16	50	12
AAATTCATTAATCTTA	ref_2989_reverse	3	0	2	4	2	2	3	1	1	0
CATCCGCAAATAACGC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTCTTTGTGTCGC	ref_2989_reverse	21	24	23	18	14	14	28	13	27	20
CAGTTCTTTGAATAAC	ref_2989_reverse	17	16	24	19	18	23	22	21	26	25
CCACGTCGTTCGGTTC	ref_2989_reverse	9	24	11	6	20	7	12	6	25	8
TGAGTCATTACCTCTA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTTCACCTTGTGT	ref_2989_reverse	26	34	20	19	49	29	35	19	46	20
TAGCGATCCATGCGTT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
GTGTACCGTACAATCC	ref_2989_reverse	17	37	26	13	45	15	51	18	56	13
TAGGGTATATGACGTG	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGACTTGGACCGA	ref_2989_reverse	2	10	5	3	15	7	16	4	20	12
ATGCTGGTCCCTATGT	ref_2989_reverse	79	90	100	108	83	98	98	68	115	83
CACGGGAAAACTCGAG	ref_2989_reverse	34	31	43	28	18	36	42	41	26	23
TTTACTTGAAGCACCT	ref_2989_reverse	102	143	108	102	101	92	96	74	124	92
TAGGCGTTTATTCTGT	ref_2989_reverse	47	54	64	49	78	61	48	38	38	46
TAACCTTACGCTTTTT	ref_2989_reverse	8	8	11	10	13	7	9	7	20	15
CGTCTTATAATTCTCT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CATCACGTCCTAAGAC	ref_2989_reverse	22	30	29	22	20	21	18	25	29	29
AGTCTGTGCTATACCG	ref_2989_reverse	17	20	22	10	15	7	16	3	23	9
TGCTTGTCTTTGCGTC	ref_2989_reverse	51	45	71	42	77	50	50	59	62	41
GGAAGGCGACGTGAGT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CATCCTATAAGTCGCC	ref_2989_reverse	51	50	60	55	47	48	54	52	53	58
GTACCCTTCACTTGTG	ref_2989_reverse	11	16	13	20	18	11	18	11	15	14
GTCATATTAGCTGCTC	ref_2989_reverse	34	33	57	31	44	28	48	36	35	42
AGTAGTCGGTTGGATA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTTCTGTTTACAC	ref_2989_reverse	83	56	75	61	81	58	91	57	74	61
GTGAGAGGTATCTGGG	ref_2989_reverse	0	2	3	1	4	3	3	2	2	4
CACTGGTAGTACGCAA	ref_2989_reverse	7	9	22	12	12	12	17	15	16	15
TCCGGGCGCTAGGAGC	ref_2989_reverse	41	43	66	44	46	37	42	36	51	33
GTCACACGTCGTCCGC	ref_2989_reverse	63	48	67	51	49	52	58	71	59	64
GCAGCGTCCGAACTCG	ref_2989_reverse	41	34	48	39	38	57	35	28	45	41
AGGGGGCCCGTTTTCG	ref_2989_reverse	84	83	132	130	93	118	101	95	104	91
CCAAAGTCAGCAACTC	ref_2989_reverse	36	49	36	43	47	36	53	27	51	42
AGGCGTGATTTTAATG	ref_2989_reverse	122	130	132	118	100	107	117	110	136	101
CTGCGCGGACCGAATG	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATATAATGGAAGCCAG	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGGTGTGTATACG	ref_2989_reverse	46	64	43	42	59	33	46	44	55	49
TCCTCCGGGCTCCTAG	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCCATTCAGCGCC	ref_2989_reverse	1	3	5	6	3	1	0	3	2	0
GACCACTTTACTATCG	ref_2989_reverse	33	24	32	29	23	21	24	20	30	31
TCTGAGCTCCACAAAG	ref_2989_reverse	2	9	4	4	6	4	10	3	4	2
GACCGGTGCGATTCGT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGGGGAGTGTGT	ref_2989_reverse	91	128	115	107	127	93	130	102	126	88
TTTGTTGGATCACGAA	ref_2989_reverse	14	17	16	12	11	11	8	17	18	14
GACCAGATTTTGCGCC	ref_2989_reverse	31	30	41	29	36	36	39	29	34	28
CTTGAGTATGAGCTCC	ref_2989_reverse	2	2	3	5	3	4	1	2	5	0
TGGATATCTTCTTTCA	ref_2989_reverse	36	27	35	29	25	34	32	31	29	20
ACACACGTAGATTTCC	ref_2989_reverse	16	25	17	24	20	20	18	14	13	13
CGCCACCTCGATCAAA	ref_2989_reverse	25	26	27	26	26	22	26	18	33	19
GGGTAGTATTCTTTGA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TGTAACTTACTTTACA	ref_2989_reverse	15	14	23	10	13	4	13	10	19	14
GATTCTGGTTCGATTC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
AAAAGCTACTTCCGTG	ref_2989_reverse	151	147	125	118	132	125	131	111	142	125
GAGATCATACATGGCT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGTGTTACGGGAG	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATGTATACCCTTGTCT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
GACTATCAAATGTAAT	ref_2989_reverse	74	74	104	86	73	96	88	101	93	73
GCGACGACCGCCTCAG	ref_2989_reverse	15	14	19	18	8	11	14	12	15	14
GAGGCTGATCATGCCG	ref_2989_reverse	234	215	332	254	234	241	240	198	252	199
AGAAGACATCTTTGCA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CATAGCGCGGAAATAT	ref_2989_reverse	41	29	37	44	34	40	37	39	37	31
ACGTGCCTTCATTAGC	ref_2989_reverse	41	56	54	52	52	62	50	57	38	55
CGATGATTGGCGCTAT	ref_2989_reverse	51	50	61	48	47	47	48	49	37	38
CTGTGGTTCTGGTTTT	ref_2989_reverse	29	35	41	19	28	29	33	21	24	39
CGGTTTTTCTGTATCG	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGCCCTGCATTTT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
AAAGGAGGACTCTGCA	ref_2989_reverse	44	50	44	34	51	34	46	36	43	28
TTGGCACGTCAATGTC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGAATTTTGGACC	ref_2989_reverse	28	31	40	36	47	27	35	35	44	43
CCTACCGGGCCAATGC	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGTGTCGCATAC	ref_2989_reverse	7	10	19	14	8	16	11	12	14	14
GTTCCCCTCAACGATC	ref_2989_reverse	30	24	34	19	20	16	36	37	24	18
ATTAGGTTCCTCGGAG	ref_2989_reverse	34	30	30	31	30	21	32	27	31	21
TTTTGACCCTGGTTAA	ref_2989_reverse	20	24	14	12	17	11	16	19	13	12
GACATCCTACTTACCT	ref_2989_reverse	0	3	1	0	1	0	3	0	2	1
ATGCCTATATAAGCAG	ref_2989_reverse	36	34	42	34	40	26	37	36	47	37
TACCTCTTATGCTATT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTTATCCATCCTCTGA	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTTCTTGCGAAT	ref_2989_reverse	64	59	73	58	62	62	61	50	66	48
GCGTGATAGTTTTTCT	ref_2989_reverse	26	17	28	15	16	17	21	13	14	10
CTTGAGAGTAGGCTTA	ref_2989_reverse	3	6	8	3	2	3	5	1	3	5
CGTTTCGAATTTTTAT	ref_2989_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTAGCTTTGATCT	ref_2989_reverse	20	33	33	37	18	43	30	31	25	31
GCTACAACTCGCCGCT	ref_2989_reverse	5	6	4	6	8	8	2	5	6	5
GTATTCCCTGGCCGAG	ref_2989_reverse	3	14	18	10	18	14	16	9	15	12
CCATACTCTCCTTCTG	ref_2989_reverse	19	22	17	14	8	13	19	6	19	13
CCTGCTCGATGCCCTA	ref_2989_reverse	21	24	52	32	37	38	42	32	39	27
TTGTTTGTCCATCCAT	ref_2989_reverse	42	54	45	48	41	45	40	37	54	31
CAATTCTTCAGAATTT	ref_2989_reverse	23	13	25	22	20	21	17	13	16	13
CGTGAGTCTGGCGAGC	ref_2989_reverse	35	51	48	37	34	30	59	38	31	20
CGAATGCTCCTAAAAA	ref_2989_reverse	26	34	38	35	46	37	29	33	21	30
TGTGTTCGGCCATTCC	ref_2989_reverse	4	8	7	1	4	3	9	5	3	6
TTATGTTCGCACCAGC	ref_2989_reverse	45	50	41	41	45	37	48	44	43	34
TGGATGCTAATGTTAC	ref_2989_reverse	7	5	13	3	10	4	8	8	1	13
GTTTCTGTGTCTTTCA	ref_2989_reverse	29	36	29	20	15	21	30	19	38	20
ATTTAATCCCTGTGGG	ref_2989_reverse	13	28	17	18	21	24	16	23	20	30
CTTCGGTTTTTCTGGT	ref_2989_reverse	48	41	40	34	42	47	39	40	50	46
TAATTACGTGTTTGGT	ref_1117_upstream	58	59	82	53	59	42	58	72	53	40
TTCAAGAGAATATATT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGTATGCACACTGCAG	ref_1117_upstream	204	163	243	200	163	194	151	163	166	135
GTTATTGGTGTGTATA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCGTTTCAAATGG	alt_1117_upstream	24	27	32	35	18	20	32	28	28	16
ACGATTCACGAGTCAA	alt_1117_upstream	22	21	32	23	16	24	26	18	32	22
AGCCTCAGGCAACCGC	alt_1117_upstream	30	15	22	28	21	24	30	21	24	18
GTTTCATTTTACACTG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTCTTCTATGATA	alt_1117_upstream	19	10	20	24	10	13	15	20	13	12
GTGATATGTGCTCTGG	ref_1117_upstream	66	44	63	68	45	73	44	63	50	38
GTCGGTTAGGCATCAT	alt_1117_upstream	11	6	4	12	4	8	5	3	4	7
AAGCACATTGGTTCTA	alt_1117_upstream	4	4	9	8	4	4	5	1	3	5
GTGTTTACTTGACACA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GAATCTGATCAGTCAC	alt_1117_upstream	1	3	2	1	0	0	4	1	6	3
GTCACCGAATACTCCC	alt_1117_upstream	9	33	8	8	42	10	40	13	47	3
TCCCTTTGTGCCCGAG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTCCTGCATCTTA	alt_1117_upstream	33	33	32	46	37	21	21	32	43	23
CGTTCTATGGATCTGG	alt_1117_upstream	128	131	203	164	135	146	149	158	144	151
CGGTGAGTATTGTGTA	alt_1117_upstream	40	37	39	39	39	41	26	30	40	26
GGTTGTGACGCCCTAC	alt_1117_upstream	24	23	34	29	25	31	34	35	25	18
GGACCGGTTTTAAATA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ATATGATGCAGACATT	alt_1117_upstream	15	14	22	15	9	13	15	20	11	11
TACGTAGGACGGCGTA	alt_1117_upstream	53	35	49	47	38	52	40	41	45	46
AGTCGTGTGGTAGTTG	alt_1117_upstream	21	30	23	19	18	33	33	35	18	28
AGCGGGATTTGCGTCT	alt_1117_upstream	3	2	5	5	2	6	3	2	5	4
CAGAAGGTATACAAGG	alt_1117_upstream	40	30	48	33	22	33	23	29	44	28
CAGGTTATGGTTGGTG	alt_1117_upstream	61	66	66	54	73	66	63	58	57	47
GCTCTGTAAGTTGTAG	alt_1117_upstream	24	16	24	24	18	26	19	24	18	11
TTGGGTTTAAAATTTT	alt_1117_upstream	15	15	17	16	11	17	5	6	13	16
TCTCCCAGGTCGCTAG	alt_1117_upstream	3	7	4	9	9	2	8	8	2	5
TGGAACCGATTTAAAT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GAACTGGTCAGCTCGA	alt_1117_upstream	12	10	27	27	13	21	16	15	13	15
CTCCTTATCAGCTCGC	alt_1117_upstream	8	7	9	6	14	6	8	9	11	14
CGAGCAAAACCTTTGA	alt_1117_upstream	39	33	55	43	26	44	42	25	37	41
CGTAGGTCGGCCGTGC	alt_1117_upstream	12	22	19	12	13	14	23	17	15	16
GGGTTATAAGTGAGCC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCACTATTTTTCT	alt_1117_upstream	53	46	67	58	46	73	52	62	51	48
ATGTCAGTCCTGATCG	alt_1117_upstream	65	61	75	73	63	65	60	64	71	81
GTCCATTTTTTATGGA	alt_1117_upstream	48	45	36	38	51	38	40	30	49	37
TTTTTGACGCCCTGGC	alt_1117_upstream	94	94	152	128	98	116	101	115	108	111
TTTTCCAGAGTCATAC	alt_1117_upstream	196	181	272	236	220	196	225	180	211	194
CTAACCATTGGATACT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTGGGGCCCTCGT	alt_1117_upstream	1	3	10	3	1	2	2	3	4	3
GATCAGCCCTTAGATT	alt_1117_upstream	11	7	10	4	9	6	10	10	7	5
GGTTACTTCTGAACGC	alt_1117_upstream	23	26	40	26	13	23	21	31	22	20
GCTGCAGGGGATCCCT	ref_1117_upstream	14	12	23	16	14	15	9	21	9	7
CGAGAGGCAAAGCGGT	alt_1117_upstream	93	55	102	73	75	65	73	82	80	71
TCTAGGCCCCTATCCG	alt_1117_upstream	32	30	31	29	22	34	30	28	25	25
ATACAAACGTCAAATG	alt_1117_upstream	34	37	51	41	34	29	30	39	52	32
TGTGGCATCGGATCGT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTCCCCACGTTGTACG	alt_1117_upstream	18	5	27	20	9	11	15	19	12	13
TTCGTTTTGAAGCTTG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGAATTGCAATTT	alt_1117_upstream	12	11	21	16	8	18	18	13	13	9
GATTGCCACAATATCC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ATAAAACTGGTTATTG	alt_1117_upstream	14	13	29	8	17	10	17	16	16	15
TGTCTTAGGTATTGGG	alt_1117_upstream	4	9	2	12	9	10	12	4	10	3
GCTGCTGCACACCTAT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TAATTGGACAGGTGTG	alt_1117_upstream	71	72	72	72	56	58	40	62	50	53
TGAAGGGAGTAGTTAC	alt_1117_upstream	23	21	21	26	19	27	20	21	30	24
TTCACGTTCAGCTACG	alt_1117_upstream	17	21	20	11	26	8	12	16	24	15
ATATACCAAGAACACA	alt_1117_upstream	36	51	56	57	41	44	57	39	56	46
GGCCTAATACCTCCTT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTTGAATCTAGAA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ATGTGCTTTCCACCTG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGATGGTCTGGAG	alt_1117_upstream	96	67	111	127	70	105	86	95	95	85
TGCATCTTGGCGGCAC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTCCCTAACTCAGGGG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGATATCGTCATT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTGCACAGAATTATAT	alt_1117_upstream	12	10	22	11	15	22	21	12	14	10
TTAGGGATCTCGAGTA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGTGTAGAAAAAA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGTCATCACAAAG	alt_1117_upstream	84	84	86	90	68	76	71	54	85	71
GCGGGGTGTATTCTTA	alt_1117_upstream	72	88	123	113	89	83	61	86	86	95
ATCTGCTTGCAACTTA	alt_1117_upstream	29	29	52	34	23	32	30	26	32	32
GCCGTGAGACCTATCG	alt_1117_upstream	12	23	28	18	15	23	15	12	14	19
TTGGGTTTCTATCTTT	alt_1117_upstream	37	25	26	32	33	33	26	31	23	37
GTCTTCGATCTTTGTA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCGAGTAATTCAC	alt_1117_upstream	8	7	5	9	8	11	11	6	1	3
CGGTCTGTCCATCTTG	alt_1117_upstream	9	24	7	8	26	6	13	9	14	2
CGCTCGTGAGTCCTGT	alt_1117_upstream	9	11	18	20	20	16	17	20	19	23
TTACAACTTACACACA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTGCACGGTAGCAAGT	alt_1117_upstream	30	37	43	44	41	32	35	31	35	29
ATGCTTGGCGGCCTGT	alt_1117_upstream	80	68	114	86	82	83	75	85	89	107
CCTGTGCGACTGTGGA	alt_1117_upstream	67	64	67	49	59	55	95	44	69	36
TTACTTACTCACCTAC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTGTTGTATTCCT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTGTGAGCAACAG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTCTGATTATGTT	alt_1117_upstream	5	5	5	6	8	5	8	9	9	4
TTGTATCACGCCTAAT	alt_1117_upstream	58	59	63	69	43	63	55	59	72	39
TTTATCTAATTCATCC	alt_1117_upstream	10	29	5	7	22	10	19	10	20	12
TAGGTACAGGATTAGT	alt_1117_upstream	21	18	23	21	28	19	12	20	17	18
ATGAACGCCAAGGGCT	ref_1117_upstream	290	246	391	290	251	281	253	273	279	258
GTTCACGGTTCTTCTT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TACACGTTTGTCTGTG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCAAGGTGCCGCC	alt_1117_upstream	93	102	126	110	105	95	116	92	115	103
CGGATTGCTCTTAAAA	alt_1117_upstream	80	46	87	82	76	67	73	57	77	75
CACATGCAGTTTCAGG	alt_1117_upstream	6	10	8	6	9	5	6	6	8	7
CAATACTGCCAAATTT	alt_1117_upstream	21	10	25	18	24	21	15	20	20	22
TCTAGGGAGCCGGTTC	alt_1117_upstream	10	3	7	4	8	12	9	13	13	11
ACTCAGCTTAGCCTGG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGCCATCCCGGGCCCG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGTACCAACAACT	alt_1117_upstream	8	10	21	15	16	11	7	13	9	9
GAGGCAAAGAGTGTAT	alt_1117_upstream	12	8	5	6	8	10	5	6	5	2
ATCGCGAAGCGCAGAG	alt_1117_upstream	41	31	56	58	39	64	37	50	40	40
GTTTTTATCGCTCCTT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
AAAAAGGTGGCTTCGT	alt_1117_upstream	0	0	0	1	0	0	0	0	0	0
TTCCGTTCTAAGAAAG	alt_1117_upstream	5	9	10	9	4	6	6	6	8	4
CTGTCTCTGTAGTTTG	alt_1117_upstream	4	12	8	1	16	1	7	0	2	6
TCGGTAAACCACGATC	alt_1117_upstream	15	5	20	16	9	12	8	10	16	13
TTGCACGCTCGTATTC	ref_1117_upstream	40	23	27	34	27	31	37	41	31	26
AATGCTTAGCATATGG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGACAGTGTCATGGAA	alt_1117_upstream	87	39	90	67	69	67	72	76	71	71
ATAGTATGCTGTTTGG	alt_1117_upstream	23	19	30	22	20	22	18	35	28	26
AGGTGTCCGTAATTGG	alt_1117_upstream	12	7	14	7	2	14	10	8	8	7
TTCGTCATATGCGTTC	alt_1117_upstream	88	82	107	84	85	112	70	103	83	93
ATAAATTCTTACAATC	alt_1117_upstream	0	0	2	4	0	1	0	0	1	1
TTCCAAGTCGTGATAC	alt_1117_upstream	16	3	11	7	9	5	9	10	9	5
AGGCTATTGGTTATAT	alt_1117_upstream	27	26	27	30	24	23	33	22	32	24
AGTGCTGGTCCTACCC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGTTGTTGTTCGA	alt_1117_upstream	46	36	59	49	49	38	40	53	52	30
AGTGTCACTCTTCATG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTGTATCATGCCACCT	alt_1117_upstream	53	45	62	56	41	52	59	65	58	62
TTGAATCATCCCTGGA	alt_1117_upstream	10	2	9	10	8	11	7	9	11	9
TGCTCGGCTCGGTATC	alt_1117_upstream	12	11	12	13	9	14	15	14	7	11
GTCTGGTAGTGGTCTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCTAATGTCGGATGAA	ref_1117_upstream	41	23	38	41	22	28	32	30	33	20
GGGACTCAGTTTACCT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
AACGCCGAGGGCGTCT	alt_1117_upstream	16	4	15	13	6	9	18	7	7	12
GGGTTAATATCGCTTT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCGGTACATACTG	alt_1117_upstream	11	22	23	18	20	11	19	22	16	11
TCTGGTTGCGGTTTAA	alt_1117_upstream	26	17	24	23	27	20	12	34	31	25
AATTTTTCTTCAGGAC	ref_1117_upstream	24	18	30	23	22	19	13	21	21	18
TCGGCAGTGGTACTGC	alt_1117_upstream	28	24	38	37	29	34	31	26	25	36
AGAACATTGAACTCTC	alt_1117_upstream	28	19	39	37	31	31	30	39	18	28
CCCCGCTAACGTCACT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTATCGTTCCTGGTTC	alt_1117_upstream	48	30	51	40	43	41	38	32	33	42
TTTGTGACCGACCACT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CAAATTACACCCCCAG	alt_1117_upstream	23	43	35	29	51	23	74	16	75	27
CCTTGGGGCCAGCTCC	alt_1117_upstream	35	20	48	35	31	27	29	25	34	31
GTTTGACACCACTGTG	alt_1117_upstream	92	84	121	101	104	82	86	73	101	90
GTGCCGACCCAGGAGC	alt_1117_upstream	46	34	56	46	40	40	39	42	36	36
AACAGATTTACAATTC	alt_1117_upstream	53	35	64	69	37	60	45	52	48	44
GTTTTGAATGCCATAA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTGACGCAGCAGGACC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCCTCGTACCCCG	alt_1117_upstream	27	44	34	34	29	34	37	30	38	37
TAACACCACGCTATTC	alt_1117_upstream	55	50	74	50	38	55	41	47	40	36
AGATTGATAACGGTAA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ACCTAATGTATGCTAA	alt_1117_upstream	41	31	42	33	32	44	41	49	39	34
CTATGTTTATTATATT	alt_1117_upstream	31	32	43	42	44	33	28	35	25	32
AACTTGGGACGAGTGG	alt_1117_upstream	17	16	19	13	14	25	13	7	12	17
ATCTCTTCCTCCACGG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GCTAATCATGTCATAT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCTTAAGCGCTCT	alt_1117_upstream	12	7	11	14	6	14	11	6	8	12
TATCTCCCGGAATTCT	alt_1117_upstream	11	24	20	20	36	13	15	19	28	12
CTCACGGTTGCAGTCT	alt_1117_upstream	62	54	54	53	41	38	74	43	58	42
TTATTAGCAGGCATAC	alt_1117_upstream	41	38	41	41	37	40	33	40	33	30
CCGGGTTTGTAAGAGC	alt_1117_upstream	45	45	60	58	43	39	38	33	44	40
CCAGGATCTCGTTTGA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCTGTGTCATGCA	alt_1117_upstream	45	63	95	65	57	59	49	62	61	75
ACTATTCGTTCGCTCG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTCGCGCTTGAAG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCATAATCCTTCAGCA	alt_1117_upstream	235	220	317	264	225	217	210	226	200	220
CTATCACCCGTGCAAA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTGGCAGCTAGG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTAAGGTAATGTT	alt_1117_upstream	13	25	22	10	13	12	16	18	17	11
ATCGTCGATGCCGCGC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTACTCTCTGATT	alt_1117_upstream	193	182	273	204	199	205	226	219	197	223
GCCATAGACCTACTAT	alt_1117_upstream	0	1	0	0	0	1	0	0	0	0
TCCGTCTGATTATTTT	alt_1117_upstream	24	22	34	47	15	34	18	33	29	29
CGTTTATGACCCACAC	alt_1117_upstream	34	50	55	51	33	35	46	42	43	45
TCCTTTGCGGGATTAG	alt_1117_upstream	65	63	76	59	74	52	62	76	65	60
ATGCGAGGTGCTTTGT	alt_1117_upstream	4	3	1	6	1	3	1	2	5	1
GCTGTAGACCCCCGAT	alt_1117_upstream	8	13	14	12	7	7	5	13	12	8
ATGCGCGTCTCCTCGG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CACGTAATTTCACTTT	alt_1117_upstream	61	52	55	59	61	75	55	71	51	52
ACAACAGACTCTTCGT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGGTAGTTTGCCTGGA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAACCGCATATTC	alt_1117_upstream	12	6	15	20	9	10	17	17	10	10
ATGCCCAGGATCGTTG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTTCTCCTTCTC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGCCCCTGAATAT	alt_1117_upstream	160	96	155	159	131	154	102	116	125	138
GGCCACGAATTTTATA	alt_1117_upstream	11	27	18	24	24	15	20	20	17	10
CGCAGTACAACTGGCA	alt_1117_upstream	18	22	13	26	32	18	25	20	23	20
AGCAATTTTACCGTGG	alt_1117_upstream	3	2	8	6	2	2	1	9	3	5
TAAGTTGGGACTCCTT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTGATCAAGTCCGTCC	alt_1117_upstream	2	5	2	4	0	3	4	3	3	0
CAATATAGTCCGATGG	alt_1117_upstream	20	21	18	16	10	13	18	9	14	16
CCTTTGTGCTGTACAC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
AAACGACCTCTGGTGT	alt_1117_upstream	10	10	11	10	11	7	15	9	11	13
ATGCCTACGGATCGTC	alt_1117_upstream	18	18	31	22	19	17	21	23	20	21
GCGAATAAATTAGCGG	ref_1117_upstream	17	7	18	12	5	13	13	13	9	2
TAGATGATGGCAGTCA	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGGTGAGAATACT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGGTCTGGTGGGG	alt_1117_upstream	1	7	6	4	2	5	5	5	3	4
TAATGACCTTTCTTCG	alt_1117_upstream	101	77	102	109	68	88	75	88	77	95
CGCATCCTAAGTCCAG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TAAAAGGTGGCTTCGT	alt_1117_upstream	75	65	111	93	67	100	55	83	85	79
AGAGATGCCATAACCA	alt_1117_upstream	49	31	64	45	26	52	37	55	51	35
AAACCCAGACTTTACG	alt_1117_upstream	119	83	116	110	77	85	77	80	69	88
TTCGATTTTTGTTACG	alt_1117_upstream	32	15	33	16	15	18	25	19	24	24
CGACGGAATTGGATCC	alt_1117_upstream	26	29	59	42	26	32	32	54	31	56
GCAGGGATGTGAGGAG	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTCCATAGATTACTGT	alt_1117_upstream	5	5	1	5	3	2	2	4	2	7
TGGCCTATGGATTGTC	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGAGGCCAAGTGTGAA	alt_1117_upstream	23	25	27	23	20	25	21	24	34	11
ACCTTTTACCACATTT	alt_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGGAAAATGTTA	alt_1117_upstream	49	49	83	66	56	54	69	60	59	55
GGACAACATTGTTGGT	alt_1117_upstream	20	17	31	18	19	22	25	30	25	16
AATCTCTCATTAAGTC	alt_3746_fdr	407	404	419	410	340	393	403	352	413	312
CGTGTTGAGTGTTAGT	alt_3746_fdr	54	47	53	52	79	44	63	45	58	34
ATAGCTCACAGTATGC	alt_3746_fdr	19	31	29	26	21	12	16	14	18	16
TTGTTAAAAACCTCAC	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGGTTGTATACGC	alt_3746_fdr	32	28	33	25	29	19	32	16	12	23
TGTAGGTGTGTTTCTA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAACATTCGGTGT	alt_3746_fdr	15	18	25	15	9	16	18	15	13	17
TACTTCCGTGTATCGA	alt_3746_fdr	38	47	50	40	41	40	45	30	47	25
TTTACCAGATGTAAGG	alt_3746_fdr	61	87	73	74	59	58	58	79	71	59
GATTTTGGCGTAGTCT	alt_3746_fdr	19	5	12	13	9	7	8	4	11	8
CGCTTGAAAATCCGGA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TTGGAGACTGTAGGGT	alt_3746_fdr	25	27	27	29	21	32	34	22	24	30
CTTAGGCCGACGAGTG	alt_3746_fdr	21	19	35	25	32	17	24	17	36	24
AATAAGTTTGGCTGTT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CAGCCTCTCCAAGGCG	alt_3746_fdr	15	58	33	30	55	18	47	25	50	18
CAAGCTCATTTGTAAG	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CTGAATTACACACTTC	alt_3746_fdr	71	115	113	105	96	99	95	99	99	88
CTAGGTGAGGAAGCCG	alt_3746_fdr	14	15	11	15	22	15	11	12	14	18
TTTATGCACCGCTGTA	alt_3746_fdr	11	9	19	17	19	11	17	7	8	6
CGGTGTTAGGTGCGGT	alt_3746_fdr	34	27	35	28	46	23	33	36	35	31
GGTGTTGACTTTCTGT	alt_3746_fdr	19	8	21	22	14	14	16	8	10	13
AATCCTCCCGCCACAC	alt_3746_fdr	18	9	29	17	17	16	11	21	11	19
GAATTTGCGAGTTTAT	alt_3746_fdr	26	24	21	28	18	22	22	26	22	12
CAGACTGTGTGGGTTC	alt_3746_fdr	284	279	300	260	304	271	297	251	355	274
GCATTCTTAACGCATA	alt_3746_fdr	11	18	24	16	14	10	9	19	12	11
CCTAAATTATTAGGTT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTTTAAGTTCTGG	alt_3746_fdr	38	29	29	29	25	28	40	23	29	29
TTTGAAGGTGCGGAAT	alt_3746_fdr	23	33	52	35	29	29	45	23	41	23
CATCGTCCGCTGTCTA	alt_3746_fdr	42	39	45	34	46	23	36	25	41	26
CGTTAGAAGTTGTAAG	alt_3746_fdr	44	62	53	76	61	60	67	48	64	48
ATAAATACCTGGCACA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TTGACACTTGTTTGTA	alt_3746_fdr	36	23	37	25	35	23	21	21	24	17
TATCTGGTTATTGAAG	alt_3746_fdr	74	95	96	72	77	65	86	73	72	73
TGGATTCCGTTTACAT	alt_3746_fdr	0	2	2	1	4	1	5	1	0	3
CAATAGGTCTTCGGAT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTGAAGGTCAGTC	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TAGAAGCATGGGCGAA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CTAAAATTACTCGCTG	alt_3746_fdr	72	65	80	62	82	72	59	60	80	80
ACGCCATGCCTAAGCG	alt_3746_fdr	32	51	45	42	59	21	58	30	53	50
CTTTTTCCTACTCAAT	alt_3746_fdr	50	61	58	66	63	42	76	57	66	58
CACGCTGAGTCCCAGT	alt_3746_fdr	35	32	43	49	47	44	49	27	40	37
ACCTTTCGGTGAACTG	alt_3746_fdr	17	14	15	19	18	18	35	21	34	25
GCGTTCGTCTGTCTGC	alt_3746_fdr	16	19	31	25	28	29	36	23	20	23
CCTTGTGTACGAGCCA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CACTCGATATCATCAC	alt_3746_fdr	63	92	57	55	97	52	94	53	113	43
TAAGGAATTCGAGGTA	alt_3746_fdr	7	6	3	4	4	5	2	1	6	1
TGACAATCATACACCT	alt_3746_fdr	3	1	0	2	2	2	3	2	2	5
GGACAGATAAGCCGCC	alt_3746_fdr	9	9	12	8	12	10	11	5	12	14
TGACTTGGCCAACTAT	alt_3746_fdr	81	86	81	79	87	79	77	66	85	60
CACACGCCTTGGGTTC	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TATTTGTGTTGCGCAT	alt_3746_fdr	45	44	52	48	45	35	38	43	65	38
TATGCCAATCCGGCGG	alt_3746_fdr	43	49	33	39	41	32	41	32	51	42
GTTCAGTCCCCCTGTC	alt_3746_fdr	139	178	185	135	150	152	163	136	185	130
AGGGTTTGAAAAAGGG	alt_3746_fdr	17	21	34	25	32	18	14	26	33	18
GCACTATTCGGGGGTT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
GCGACTGTAGTTCCAA	alt_3746_fdr	27	30	36	19	27	27	37	26	38	26
ATTCATAGGACCGTGT	alt_3746_fdr	20	12	26	12	16	12	12	15	26	14
TCATTTCTGCTCATGC	alt_3746_fdr	5	2	2	1	5	5	1	2	1	2
CGTCACAATAAGGGGG	alt_5706_new	0	0	0	0	0	0	0	0	0	0
ATTAACCATATCTTCC	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGCTTGGGCGCTG	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGCACCCCCTATG	alt_3746_fdr	40	33	44	36	41	34	43	40	31	37
CTTTACCATTCCACTG	alt_3746_fdr	36	42	30	39	53	24	32	24	52	25
TTGCTCAGTTGTCCCG	alt_3746_fdr	3	8	2	7	9	3	8	4	7	2
GATCATCTCAAAAGCA	alt_3746_fdr	80	75	97	85	78	89	97	72	88	71
GGCCCCCTGCTATCTC	alt_3746_fdr	22	14	27	20	30	20	25	18	25	22
GAACCTGAGATAAGTC	alt_3746_fdr	19	25	36	30	20	12	37	11	32	26
TGTTCTTGGGTCCGGT	alt_3746_fdr	15	17	20	33	28	19	25	29	20	16
ACACTTCTGTCCGGGT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTGGCTACGAATG	alt_3746_fdr	61	94	101	53	84	62	106	65	96	64
GACACGGGAACTGAGT	alt_3746_fdr	0	0	0	1	0	0	0	0	0	0
GGCTACCTTCCGGCCT	alt_3746_fdr	118	110	159	139	110	113	133	117	132	117
AGCCATTTGTCAGGGC	alt_3746_fdr	68	101	87	77	102	50	113	66	130	65
TTTCGGATCATTATTA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
AATCTGGGTGTGGAGG	alt_3746_fdr	62	88	69	71	88	53	88	71	82	68
CGCACGGTAGGGTAAG	alt_3746_fdr	54	40	59	51	47	52	41	38	52	47
GGTCATGTGTAAATTG	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTGTAGCGAACAG	alt_3746_fdr	17	10	12	8	15	17	14	12	9	7
ACTAGAGATGGATTCA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAAGGCTAGCGTA	alt_3746_fdr	22	24	19	19	16	14	14	13	16	19
AATTCTCGTGGCAATT	alt_3746_fdr	36	34	48	38	38	28	37	36	31	26
TACTCGGGCCATTGGA	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CACACTGTTATAAGGT	alt_3746_fdr	15	17	26	26	26	30	23	25	32	32
GCGTGCTTGGTCCCTT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CGGCATGTGTTGTTTC	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
CAACGGGAATAGGGGT	alt_3746_fdr	37	70	72	59	69	59	70	63	73	56
AAATCCCTCCTCTGGG	alt_3746_fdr	16	16	13	18	12	10	16	21	18	14
CTTCTATAGTTACCGT	alt_3746_fdr	23	43	51	37	54	37	42	35	56	24
TGTATTCTCGTACCCG	alt_3746_fdr	20	22	26	23	21	14	23	16	28	25
AGGGCTAGTGGTCCTT	alt_3746_fdr	15	11	11	9	10	6	12	10	10	9
GTCTACCCTGTGAACC	alt_3746_fdr	51	68	72	51	67	43	63	54	58	51
GTTCACTCCATTCTGT	alt_3746_fdr	9	59	12	11	76	7	69	6	70	7
TTTAGGACCGAGGTCT	alt_3746_fdr	9	14	20	11	20	6	15	11	5	9
AAGTAGTGTGGACTTT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCAGTAATTGTAC	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
GGAAATTAGTTTCAAA	alt_3746_fdr	0	2	3	1	3	0	0	1	1	0
TTCTAAGGCGCCAGTG	alt_3746_fdr	8	11	24	16	15	15	21	16	9	7
GAGATATTTTAGCCCG	alt_3746_fdr	140	162	201	152	157	147	156	132	152	112
GCGACCCCTGTTATGG	alt_3746_fdr	18	16	22	11	15	13	17	12	19	17
GACTGTATAGGATATC	alt_3746_fdr	42	38	42	37	44	22	39	46	64	33
ACTCGTCCACCGTAAA	alt_3746_fdr	3	4	3	4	6	5	5	0	1	6
AGATCCTGAGAACGTT	alt_3746_fdr	11	18	15	16	8	17	17	9	11	10
CGCGCGTGTCTACGTT	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
GCATAGACTACCTAGC	alt_3746_fdr	22	49	48	40	41	37	52	24	46	30
AGTTCGGAAAGTGGAC	alt_3746_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGGCGGGCATAAT	ref_6059_new	39	85	48	45	60	36	61	53	56	37
AGGTCCTTAGGGCGGC	ref_6059_new	5	21	8	5	27	12	19	4	23	9
CCGGCTTATGGAACGC	ref_6059_new	6	35	12	14	44	11	38	11	49	12
CAGGGTTTTTACCTAA	ref_6059_new	12	24	20	12	33	15	16	9	20	16
GGGGGTTTATTTTAGG	ref_6059_new	6	20	10	4	14	6	14	5	13	6
GTTTTCGATCTCAGCG	ref_6059_new	25	47	48	28	41	35	44	20	32	11
AAGCATCCAACCGGAT	ref_6059_new	11	56	45	19	70	20	56	27	55	26
CGACCTACCGGAGTAG	ref_6059_new	0	0	0	0	0	0	0	0	0	0
TGCAATACTGTACTGT	ref_6059_new	3	6	4	4	12	5	12	3	15	9
CAACAATCGCGCTCAG	ref_6059_new	7	22	14	17	47	20	35	22	36	15
TAACTGTGCCCCTGCG	ref_6059_new	14	43	37	17	38	13	43	21	42	22
GGAACGGGATAGTATA	ref_6059_new	32	35	32	20	41	25	57	18	49	24
GTCAGGACTTATCCAT	ref_6059_new	6	10	10	15	12	8	13	8	21	8
ACCCTCTGACCTGTAA	ref_6059_new	4	11	12	6	10	11	12	6	14	2
CTGGGGTTGGGTGGCC	ref_6059_new	4	7	9	3	7	4	7	2	9	4
GCGCTCTAGTTTTTGA	alt_6059_new	22	88	51	45	89	32	82	39	107	34
AACTAGCAACGATCAG	ref_6059_new	14	12	13	14	26	18	24	10	18	12
AGCGGTGTTTATCCTC	ref_6059_new	9	17	15	4	10	5	15	8	23	5
GCCCCTCATACTGTAC	ref_6059_new	56	137	90	73	161	72	164	61	152	63
CACGCCACTTTTTTTC	ref_6059_new	0	0	0	0	0	0	0	0	0	0
TCTATATCGCAATAGA	ref_6059_new	16	24	12	3	8	11	10	8	24	4
CAGTGCGGTCCCTTGC	ref_6059_new	8	32	9	8	19	3	36	9	30	1
TCGGAAACCCCGACCT	ref_6059_new	17	65	25	19	62	21	71	18	64	23
CGAAGTTTTACGGTCT	ref_6059_new	0	0	0	0	0	0	0	0	0	0
GCGTATACGCTCCAAA	ref_6059_new	48	88	60	32	89	35	63	37	71	42
CACGCCACTTTTTTTT	ref_6059_new	53	97	74	61	91	45	111	44	121	48
TGTGTCGCTTGTATCG	ref_6059_new	52	65	41	30	80	40	83	35	85	30
TCACGCGGATTCACAC	ref_6059_new	4	6	7	3	9	2	3	1	8	2
TGAGTCTGCTGTCCCG	ref_6059_new	11	30	27	18	33	20	38	12	44	17
AGGCGTGAGGCCGGAA	ref_6059_new	64	112	64	46	107	63	124	62	104	48
TCTGCAAGATCGGCAC	ref_6059_new	4	10	7	3	10	5	12	7	14	6
TGAGAATAGCGCAATC	ref_6059_new	1	0	3	3	1	2	6	2	8	1
GCAACTAATTGGACAT	ref_6059_new	3	25	4	6	11	5	12	3	12	9
GATTTATTTTGTTGGG	ref_6059_new	20	21	11	17	27	8	26	10	29	13
TCAATAGAACCCTGTT	ref_6059_new	0	0	0	0	0	0	0	0	0	0
GCGCCCTGTTACGCGT	ref_6059_new	0	0	0	0	0	0	0	0	0	0
CGCTTTCGCTCTCTGG	ref_6059_new	10	15	9	7	15	9	26	6	23	12
CTTAGTAGCGACCACA	ref_6059_new	23	19	8	21	27	18	62	22	40	15
TTCCGACCACTGCTCG	ref_6059_new	29	58	39	36	57	43	64	29	58	27
CAATTTCGCCCTCGGA	ref_6059_new	20	36	41	28	37	28	54	15	47	25
TGTCAAAGAATTCTCT	ref_6059_new	11	26	16	10	27	17	31	11	29	15
CTTATCAACGGAATAA	ref_6059_new	3	5	1	1	2	3	1	0	0	0
TCACGCAACAGTTCAC	ref_6059_new	0	0	0	0	0	0	0	0	0	0
ATACGCGCTTTCAAGC	ref_6059_new	0	0	0	0	0	0	0	0	0	0
GCTTTCCCCGCTAAAA	ref_6059_new	5	36	12	7	8	6	33	9	19	4
ATTCATGAGTTGTTAA	ref_6059_new	13	36	15	8	30	16	29	17	26	12
TCAAATGGGCCCCCTC	ref_6059_new	6	8	6	3	4	1	10	4	2	3
CCCAATTTTCTGAGTG	ref_6059_new	43	119	63	45	94	44	133	43	128	46
TTTCAAGCCGGGGCCT	ref_6059_new	32	38	29	23	41	18	51	15	37	28
TTGTCCTTTCGACCGC	ref_6059_new	37	74	42	44	74	31	101	33	73	32
AAATTAACTAGGCGAC	ref_6059_new	2	2	1	0	1	0	1	0	5	0
TGATTCGCGCCGAACG	ref_6059_new	2	10	11	5	15	2	13	9	8	4
ATGCCAATATATGATG	ref_6059_new	7	7	3	2	13	8	8	2	10	2
ACGATGCAGTTACTCA	ref_6059_new	0	0	0	0	0	0	0	0	0	0
GCCCAGTAAGTGGTAT	ref_6059_new	84	229	119	117	214	125	248	113	263	92
ATACTTCGGCACCATG	ref_6059_new	29	49	45	39	67	38	51	32	56	23
CGGTACCGATGTTCGC	ref_6059_new	0	0	0	0	0	0	0	0	0	0
CAGTCTCCGGACTGCT	ref_6059_new	19	39	10	11	36	21	29	8	42	14
TCGCAGAGGGCTGTTA	ref_6059_new	9	13	1	6	23	7	27	5	17	13
GTATCGAATGATCTAC	ref_6059_new	115	240	155	103	212	123	216	94	232	92
CTATATCGGTCTGCAC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
GGCCTTCGCGTAGTGA	ref_6059_new	5	5	2	1	8	2	13	2	7	4
TGTGCGAGTTTCTGTC	ref_6059_new	15	20	15	14	19	10	29	12	20	13
GGAGCTGCATCGTTTG	ref_6059_new	21	32	19	23	31	15	35	14	25	14
GTTAGCGTTTCGTTCG	alt_6059_new	34	85	35	29	79	31	75	43	68	33
ATTGTCTTTTGTCGAG	ref_6059_new	8	5	5	9	11	5	7	3	7	3
AGGTATCTGGCCTAAT	ref_6059_new	7	8	4	6	9	2	14	3	17	5
CGCTCGGTCTTTACAG	ref_6059_new	5	19	2	8	17	3	12	3	16	5
AACGCTGACATGGAAC	ref_6059_new	0	0	0	0	0	0	0	0	0	0
CTTAAATGAATCCTGG	ref_6059_new	10	56	22	9	44	10	49	11	39	12
TCTAACCCCATGATTG	ref_6059_new	0	0	0	0	0	0	0	0	0	0
TGTACGTGCATTGGGA	ref_6059_new	0	0	0	0	0	0	0	0	0	0
TTTAGGACTCTAGGTT	ref_6059_new	0	0	0	0	0	0	0	0	0	0
TAACTAGAGTTCCCGA	ref_6059_new	10	12	3	12	13	8	12	7	12	7
AATAGGACTTTGTCTT	ref_6059_new	2	3	0	0	0	0	0	0	2	0
CCGCTTTTCCCGAGGA	ref_6059_new	35	57	50	29	60	41	71	38	74	32
ATAGCATCAGGTGAGG	ref_6059_new	14	28	16	16	20	9	29	15	12	16
AAAGGTTTTATTTTCA	ref_6059_new	17	34	26	15	30	20	36	11	35	13
ATCGACACCCTGCTAA	ref_6059_new	0	0	0	0	0	0	0	0	0	0
CCGAAACTGAAAAAAT	ref_6059_new	9	43	5	9	43	8	44	6	46	8
GCGCCCTGTTCCGCGT	ref_6059_new	9	21	8	12	31	11	24	6	25	12
TCACGTATAAGGCAGT	alt_6059_new	8	12	11	16	32	9	18	13	17	8
TTACTTCTACGCCCAC	ref_6059_new	0	0	0	0	0	0	0	0	0	0
ATGTCGGGCAGGTTCG	ref_6059_new	6	22	11	10	13	10	20	5	21	11
TGAGCATGATTCTTAT	ref_6059_new	22	40	25	18	33	27	48	18	39	23
GGCTGAAATCGCACAG	ref_6059_new	5	14	4	8	11	4	5	3	8	11
TCTGATTCGTTACAAA	ref_6059_new	3	7	3	5	4	0	2	2	7	2
TCTTTCGGTGCAGGGA	ref_6059_new	6	8	7	7	22	7	18	9	15	1
GTACGGTTAACTCTGA	ref_5833_new	94	85	102	85	88	103	124	75	112	74
CGCATACTCTTCCTGC	ref_5833_new	55	73	63	60	61	50	52	47	54	43
TTGAATTCAGCGCAAT	ref_5833_new	23	18	32	31	24	27	33	25	42	20
ACTTAGCAGGCGATTC	ref_5833_new	31	35	43	32	27	35	22	22	14	28
GAGCTGTTTACTGGGT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TAAGTCAGAATGTCGA	ref_5833_new	26	18	22	19	15	21	15	9	18	12
GGTCTAGCATTAGCCA	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TTAACCGGACTATAAG	ref_5833_new	50	61	63	43	49	53	40	36	40	39
CGGATCATCAAGCAGA	ref_5833_new	205	159	218	214	167	182	178	214	197	176
AGTGGTTTGTTCGTCG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CACCGATTACCGTATA	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TTTTTGGCTAGGTATC	ref_5833_new	12	16	13	22	13	11	12	16	9	10
ACCCTAAATACAATTC	ref_5833_new	17	13	21	20	29	10	17	14	22	19
GTCTTGACCAATCTTG	ref_5833_new	36	31	32	35	31	35	33	33	49	33
ATTCTGAATTTTGTGG	ref_5833_new	30	26	56	49	20	36	27	38	33	33
AGAGCAGGATTCCCCG	ref_5833_new	17	19	17	15	16	20	15	16	11	8
ACTTAGAGGCCGATTA	ref_5833_new	0	0	0	0	0	0	0	0	0	0
AGAATCATCCTAAGTT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TTATTTCTGCCTGTGC	ref_5833_new	53	56	50	58	52	44	37	49	64	29
ATATACATACTTCTGC	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TTTTCGGGAGATGCAA	ref_5833_new	150	160	186	202	163	163	170	168	166	149
TCGCCTTGTCGTAGCA	ref_5833_new	44	42	51	45	38	31	41	25	44	24
GACACAATAGCCTGGC	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GGTCGCCCACTCAATC	ref_5833_new	34	39	40	53	42	47	53	48	47	44
TATCTAGGCATATTCT	ref_5833_new	1	8	6	4	3	4	3	3	3	1
GTTTTTGGCTTAATCT	ref_5833_new	2	8	6	8	8	5	3	5	5	4
CGTCCGTTGGGGCTTG	ref_5833_new	68	57	63	88	70	47	63	62	54	71
TATCATCGTCTCTTAT	ref_5833_new	10	10	5	8	16	5	5	9	5	7
AACAATTAGTTGCGGT	ref_5833_new	24	14	23	31	20	28	38	25	20	23
ACGTCATAGTGTCTAT	ref_5833_new	18	24	28	23	23	21	16	13	24	17
GTTCTCCCTCGCTCTA	ref_5833_new	33	35	27	24	32	40	49	30	46	33
CCCGTGGGAGGGATTG	ref_5833_new	17	20	12	19	20	16	21	19	23	10
GCTGTAGTCCAGTAAC	ref_5833_new	13	12	26	15	21	18	20	32	22	10
GCCCTGAACTGCTGAT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CAATATGTTTAGAAAG	ref_5833_new	95	92	113	103	84	92	90	102	87	74
TGATATCAGATCACTT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TCATGAATCACGTTGT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GGGTATATCCCGATTC	ref_5833_new	29	6	27	12	24	21	16	11	12	8
TCTGTTCTGTAACAGG	ref_5833_new	17	14	17	18	16	12	14	21	9	16
ATCAACACTTCTTCAA	ref_5833_new	0	0	0	0	0	0	0	0	0	0
ACCCATGACCAACCCT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TTTGACCCCGACGCTA	ref_5833_new	3	0	3	0	0	0	2	1	2	0
CTATTTCATCTAGAAA	ref_5833_new	0	0	0	0	0	0	0	0	0	0
ATATGCCCTACACTTA	ref_5833_new	69	58	82	86	69	68	81	71	91	78
TATTTACACCGCCGCT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TATGGTTCTTTAAGTC	ref_5833_new	14	7	6	18	9	9	11	10	9	7
CTTAAAGCCGTGGCTG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CAGCATTGTGGTCCTC	ref_5833_new	1	2	4	0	1	0	2	3	2	0
AGACTATCGGATAAGT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
ATGCAGGGATGGGCGC	ref_5833_new	0	0	0	0	0	0	0	0	0	0
ATCACGAACTTTTTTT	ref_5833_new	60	64	61	70	54	47	57	62	64	63
GCGGGAGTACTTGTCG	ref_5833_new	1	3	2	2	4	2	2	2	4	1
CAGAGATGACATGCTT	ref_5833_new	4	10	8	10	10	7	7	8	9	9
GTGTGGCGGATGTTGG	ref_5833_new	16	6	17	16	6	19	16	5	9	12
AAAGTATAGATGCGCT	ref_5833_new	114	110	114	127	79	105	107	109	103	106
AGGATTTGGATTAAAC	ref_5833_new	28	26	32	28	17	33	31	33	31	32
ATACGACGGGTCTTGT	ref_5833_new	30	22	32	30	20	25	26	22	22	24
TAAGTGCAGATAAGCC	ref_5833_new	12	6	13	8	9	7	12	5	8	7
AGGTCAAACCATAATT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GGGATCGGCTCCGCCT	ref_5833_new	212	205	225	197	204	196	173	175	194	202
GTAGTGAAGCAACCGT	ref_5833_new	56	75	60	63	59	47	62	40	82	44
CTGTATGCTGCATAAA	ref_5833_new	18	15	28	19	20	18	20	11	20	18
GTGAAGGATTGTTCAT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
AACAGTAATGGGGCAC	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GGGTCCCCATCGAGAT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GCATTAGGGTATTTAC	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GTAAGCGTAATATCGA	ref_5833_new	16	11	20	21	21	17	12	14	12	20
ATTCGGGCTCTAGAGG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
ACGGGGCTAGCGAAGT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CCTGCAGCTTATAAAT	ref_5833_new	5	3	7	6	10	2	4	1	9	5
GGATTGCGTTTAAAGG	ref_5833_new	58	60	90	67	55	61	82	56	75	53
TCTTCTCCTCATGCTT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CGGTGTTCCCCGTGCG	ref_5833_new	20	41	28	21	34	31	34	32	32	26
TTTTTAATTCTCGCGG	ref_5833_new	16	21	34	26	25	22	26	17	28	21
GGGGATGGTTCGTCAG	ref_5833_new	23	27	29	31	26	26	25	17	24	30
CAGGTTATCCTTATTC	ref_5833_new	138	143	206	143	141	134	150	146	145	118
TGGGTCCTATAAATCA	ref_5833_new	2	0	1	1	0	0	4	6	0	0
GCGTTTGGTTTTTGGG	ref_5833_new	176	158	212	192	170	173	178	146	146	165
TCTATTAAGATGCGTT	ref_5833_new	0	2	1	1	0	1	4	2	0	0
TGGCCGCTGTAGTTGC	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TAAAACCCCAACAACG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TGCTTCCTGCTTTTCT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TTTGGGGCATGCTTAG	ref_5833_new	11	8	7	11	7	14	13	8	9	2
CTATATCCTCTATGAC	ref_5833_new	23	34	43	27	26	27	36	24	43	25
AAGCATATGCCTTAGT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GGCCTATCACAGTGCT	ref_5833_new	12	20	12	12	16	12	22	6	13	7
TTATTCCTGTGAGTTT	ref_5833_new	5	5	6	6	8	7	6	13	7	6
ATAAGGCCATCCCTGT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GGTAACTCGTATGCAG	ref_5833_new	23	6	13	6	16	11	12	7	12	15
GAACGGTGGCTGCCTA	ref_5833_new	21	23	28	23	17	27	13	24	19	14
GGGTATTTCGGAATTT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CACATTCATGTATTTG	ref_5833_new	0	3	4	6	2	3	8	3	6	2
GGGATAGCTACCGTCG	ref_5833_new	61	64	108	58	50	62	74	63	55	62
GGTGCAGCATGCGCGT	ref_5833_new	25	19	30	23	30	20	29	20	30	13
TGGTTCGACACCTGTA	ref_5833_new	6	9	7	5	9	5	5	8	7	6
AGCCCCAAAGATCACT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
ACATCGATGAGCGGAT	ref_5833_new	80	66	89	64	67	84	59	67	62	56
TATAATTTCTGATCTA	ref_5833_new	150	125	174	146	138	147	118	128	134	141
CGTTTGACGTTCTTCC	ref_5833_new	53	52	56	58	51	48	61	54	67	43
AGACCAGATGAGCCCG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CTCAAAATTGGGACGA	ref_5833_new	127	83	118	106	99	111	91	103	97	92
TGCTTGCTAACCTTCG	ref_5833_new	11	21	27	14	20	17	14	11	11	20
GATTGCAACCTTTGTG	ref_5833_new	48	61	70	53	56	42	61	67	77	51
TGTAGGTTAACTTGTG	ref_5833_new	11	17	16	13	12	10	7	5	20	9
CGTTAGCTGGAATGCT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GCCCATATGTAGGTTC	ref_5833_new	4	0	5	2	4	6	4	1	5	0
GCTATCTAGAACAGTT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CCGTGGTTCTATTATC	ref_5833_new	50	76	65	47	75	57	60	42	70	51
TTAAATTGCTATTAGT	ref_5833_new	32	39	47	60	40	27	34	37	38	33
TTTATCCCCTACGGTG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CACCTCCTGAATATGC	ref_5833_new	186	174	258	221	206	229	195	192	196	174
AGCGTACCATACAGGC	ref_5833_new	43	55	51	43	44	33	38	39	42	30
CTCAGTTCATCGGGTT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
TCTGTAGGGCTGGATA	ref_5833_new	5	7	5	3	4	6	5	6	6	5
TTATTATACCACCGGT	ref_5833_new	95	66	110	88	81	88	80	97	90	70
TCCTACATTAAGGGTT	ref_5833_new	39	24	37	47	26	44	30	31	38	34
TCGCAGCTCGCCGCGT	ref_5833_new	54	51	58	56	44	40	46	51	52	42
ACAACATGCTCTTTGT	ref_5833_new	34	36	47	49	44	43	33	30	29	42
TTGCCGGAGGCCCCGG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GCGTTCTTCAGGAATG	ref_5833_new	133	110	150	150	131	136	96	140	105	110
CTGATAGTCCACGCTG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GTAAGAGCAAACAGCT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CGTAAGCTGTAATTTC	ref_5833_new	4	10	8	13	8	6	5	9	11	4
GTATGCCAACTGTTTC	ref_5833_new	115	129	151	141	191	93	160	107	186	96
CGTAATTTCAACGACC	ref_5833_new	39	29	40	31	34	21	21	32	33	32
AGCTCGCCGTATCGTG	ref_5833_new	31	26	44	32	47	32	44	36	37	23
TATGTGGGACGAGTTT	ref_5833_new	43	25	51	40	38	38	44	39	54	32
CCACTGCTTGTCCCTC	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CGCTATGTAGTTAGCT	ref_5833_new	27	19	33	36	25	31	30	19	18	15
GGTAGTGCGTCCTCCT	ref_5833_new	0	0	0	0	0	0	0	0	0	0
CGTGGTCTAATTGACT	ref_5833_new	36	31	70	54	51	54	61	63	56	40
CTACTTTAGCATTTGA	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GTTCGGTCAGGGATAG	ref_5833_new	15	17	16	16	19	13	10	12	12	15
CAACTTGATTTGGTTT	ref_5833_new	23	10	25	14	17	18	11	10	16	27
TTTTACTGGATGTTCG	ref_5833_new	13	10	13	17	11	18	13	18	13	8
AAATGCCTACTTCAGC	ref_5833_new	28	19	33	30	29	31	19	18	9	23
GTTAATCTCGTTGCTA	ref_5833_new	22	26	28	12	13	15	18	16	17	16
ATGACTTCCAGATCCG	ref_5833_new	0	0	0	0	0	0	0	0	0	0
GAGCTGTGTGCCTTCC	ref_5833_new	3	3	7	3	1	2	1	1	0	3
GTTTATTTCTAAACGT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
CCTTATTCTTATCCGC	alt_3569_reverse	117	75	144	114	97	103	104	115	101	123
CAAGTGTACCTCGTAG	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
CAACTTCTAGAACGGA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTTATGTTTTACC	alt_3569_reverse	58	56	37	45	55	60	77	46	79	61
CTTAGCAGGTTTTTTC	alt_3569_reverse	55	55	48	63	51	33	51	60	63	43
AGTTAATCGCCGCCCC	alt_3569_reverse	6	8	9	18	15	13	12	11	10	22
GGTGACCCATGTTAGT	alt_3569_reverse	102	129	138	133	123	104	110	100	124	79
TCTCCCCATAGTAGTC	alt_3569_reverse	11	57	16	13	52	13	41	9	66	7
AACTCGAGGTGTTCTT	alt_3569_reverse	4	4	5	5	3	5	2	4	3	6
GGGGATGTATCTACTC	alt_3569_reverse	82	79	114	80	63	82	79	77	78	77
TGATAGCACGTTTTCT	alt_3569_reverse	31	18	26	24	20	15	23	21	19	21
GCCTCCGTGCTGCCCC	alt_3569_reverse	16	19	48	23	23	23	18	24	23	27
GTTTATATCCATGGGA	alt_3569_reverse	33	34	40	31	43	35	30	47	43	38
CTACATGGGGCGATGT	alt_3569_reverse	26	22	30	31	33	24	26	34	46	28
GTTTTAGGTCACGCCG	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
GTCATGACCACGATCC	alt_3569_reverse	52	48	53	70	51	68	47	54	53	66
GGGTCTGTACCGCGGT	alt_3569_reverse	39	28	46	33	28	24	38	28	29	30
CGGAGCTGCTAGTTAA	alt_3569_reverse	10	10	14	14	15	15	9	21	10	22
TGTGCGTCAGCACTAG	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAATGGTCGTGAC	alt_3569_reverse	11	10	6	10	9	8	8	7	12	4
AACAGATGGTCCTTAA	alt_3569_reverse	62	54	85	64	52	60	44	41	48	61
TGTTTAGGTCATCGTT	alt_3569_reverse	65	48	63	52	45	52	43	39	53	35
AAGTTTTTACGCTGAG	alt_3569_reverse	104	86	134	123	101	94	104	104	108	109
CCGCTTGCAGATATGG	alt_3569_reverse	34	11	27	33	25	18	15	28	11	29
AATGAGTTCCGCCTCT	alt_3569_reverse	2	0	2	1	0	1	2	3	1	2
TCTTTCCTTATTGTCT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGACACGAAGTCC	alt_3569_reverse	16	30	25	28	28	29	29	16	38	23
TTCAGAACAGTTGACA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
CTAACGCTTTTTCGTA	alt_3569_reverse	10	6	8	8	10	3	8	3	3	2
GTTTGTCCCTACTTAA	alt_3569_reverse	65	62	72	76	60	76	64	68	62	60
AGGTCATCCTCGATCC	alt_3569_reverse	67	47	87	63	54	57	55	68	52	48
AAGAGAGCAAGGGCAT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
CATCGGCCGGTTCTCT	alt_3569_reverse	24	42	19	20	16	25	41	20	35	16
GTTATTTCTTCATGAT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
CTATCGTATCGAAGAA	alt_3569_reverse	15	13	19	16	10	6	6	12	14	7
CCCACTGCGTAACCCT	alt_3569_reverse	61	45	68	54	51	50	53	53	52	50
GGTTACCATTTTGGTT	alt_3569_reverse	120	122	142	130	113	119	98	108	161	103
CTATCTGCGAAATACG	alt_3569_reverse	0	0	0	0	0	0	0	0	0	1
GGGTAAGGTGTGTATA	alt_3569_reverse	24	26	33	29	40	30	21	26	18	17
TAAACCTTACGGTTAT	alt_3569_reverse	55	67	68	62	35	34	59	44	68	51
TTATAGATTATCTTAT	alt_3569_reverse	39	33	46	30	38	36	19	28	33	27
GGGATGGGGGACGCAT	alt_3569_reverse	24	34	34	39	21	21	18	23	36	26
TATAGGTGTGCGCCGC	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
TCATTTTGTAATGAGA	alt_3569_reverse	46	48	85	60	47	46	38	70	46	75
TTGTCAAAGGTTGTTG	alt_3569_reverse	68	67	83	71	56	57	68	66	78	73
GGCATTATGTTGACAG	alt_3569_reverse	10	17	11	21	19	12	8	8	12	8
ATAATACCCGAGTAAT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
TCATTTATTGCGATAC	alt_3569_reverse	11	17	16	5	20	11	16	11	12	16
ATGAGTCTCCAGTCCT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGTATTATCAATCGCT	alt_3569_reverse	11	9	22	9	12	13	10	13	16	10
TTTCGTTATACCTTGC	alt_3569_reverse	29	24	41	28	18	35	14	27	22	26
TGGTCCCGTAGGTGAA	alt_3569_reverse	48	43	59	42	50	58	52	50	59	35
GAGGTCTCTCGTCCCT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTCTATTTACTTG	alt_3569_reverse	22	24	32	26	39	24	43	19	43	28
CTCCTCACTAAGAATG	alt_3569_reverse	30	22	40	28	24	34	37	29	30	23
TTGCTCAGGCGCACCT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
ACCGGTACCGTTCATT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
GGTATTGTGGCGTGAA	alt_3569_reverse	175	180	207	177	135	168	167	136	143	153
TAAAGGTGCATGTTCA	alt_3569_reverse	44	43	53	52	48	39	54	42	63	37
AGAGGTAGGCAATCGA	alt_3569_reverse	46	29	43	23	31	48	31	27	40	31
TGGATCACGCTTTGCT	alt_3569_reverse	16	16	18	13	10	9	11	6	14	13
GGGCAACAACCCTTCC	alt_3569_reverse	35	29	40	44	30	33	37	41	33	27
TGGATACTCCATATGT	alt_3569_reverse	48	37	48	50	50	53	49	36	46	27
ACTGTTGACGTCCGTC	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCTTAGGCTCATG	alt_3569_reverse	27	33	37	35	32	33	29	31	26	28
TCTGTGGGGCTACTTG	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTGAGATGAACGG	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
ACTATCTTCAATCGCA	alt_3569_reverse	60	73	77	72	50	35	61	57	59	74
ATTTAGGCCCGTATGT	alt_3569_reverse	36	41	53	31	31	40	25	32	30	30
AGCCCCCGAAGCATGT	alt_3569_reverse	52	33	58	39	48	48	39	36	56	35
CCGCGGTGGTGGTAGC	alt_3569_reverse	19	49	45	33	46	26	67	17	62	19
GGTGTCGCTTTCGTGG	alt_3569_reverse	32	26	31	28	26	34	23	34	29	40
GAAATAAATGGACGGT	alt_3569_reverse	18	14	23	8	12	17	13	10	8	14
GTCAGAGTGCATGATA	alt_3569_reverse	24	37	33	22	31	26	43	22	37	24
TGAATGGCGTCTACGC	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AATACAAGACTGTGCC	alt_3569_reverse	106	64	121	110	83	104	110	110	89	92
TCTCACCGCTCTCTGG	alt_3569_reverse	74	59	88	54	58	52	60	55	54	65
GATTCGCACGCCTGAA	alt_3569_reverse	37	58	63	49	52	40	48	56	44	57
TCCTCATTCTGATGGT	alt_3569_reverse	104	77	108	92	94	77	88	88	91	71
CTTGCCTGCGGAGATC	alt_3569_reverse	71	82	82	77	55	75	74	53	92	98
GCGCTCGCCAGTTTAC	alt_3569_reverse	33	38	40	29	34	40	30	38	40	35
GGGTTTCTATGTGATT	alt_3569_reverse	49	29	54	65	37	57	57	40	43	47
TAGCGCTTGTTACCGG	alt_3569_reverse	3	2	7	3	3	11	5	3	11	6
CTAACCAATGAGGCCT	alt_3569_reverse	11	8	9	9	7	3	3	7	9	6
CGATATGCAGGCCTTG	alt_3569_reverse	4	4	11	12	8	8	3	11	11	8
ACCTACATCCGAGTAA	alt_3569_reverse	117	111	108	87	146	74	123	98	113	94
TTTGCAGAGAGTATTT	alt_3569_reverse	9	14	16	15	12	17	17	8	19	17
GCGAGTTACGGTGGAA	alt_3569_reverse	80	46	82	84	68	70	48	60	56	59
GCACGTTCTTGCACCC	alt_3569_reverse	34	45	40	33	34	28	19	23	40	30
TCCAATTCTGCTCGGT	alt_3569_reverse	14	6	14	22	8	5	13	11	15	12
TTCGTAGCCTCTTTGA	alt_3569_reverse	10	15	16	12	6	11	7	11	10	10
ACGTTAGGCGAATCAT	alt_3569_reverse	17	11	17	18	10	19	13	14	12	18
TTTTTTGCACAGCGGA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTTAACAGAGTAT	alt_3569_reverse	45	51	54	52	35	48	43	45	44	55
GGCCTCACGAGCACAT	alt_3569_reverse	34	20	30	27	27	31	24	27	24	23
GTACACATCTACTCTT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGATTCACTTTAA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AATCTCTTATAGGATG	alt_3569_reverse	42	46	59	46	29	57	40	40	54	48
CACAGTGATATAGGTC	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTGGATGTATCTC	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGGAGCGTGTTCA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGACTTCTTAGA	alt_3569_reverse	89	65	86	82	59	77	73	86	69	75
TGTTTTCGACGACCCG	alt_3569_reverse	57	48	73	72	53	74	45	58	55	69
GAAGGTTTGTCCCTGA	alt_3569_reverse	91	95	137	74	114	103	110	74	87	83
AGTCTGCACAAGGTAG	alt_3569_reverse	53	73	52	42	44	47	51	45	52	65
AACTAGCCTGTTGGCG	alt_3569_reverse	328	319	407	392	316	327	343	303	350	318
TTCGGCTACTGGGGCC	alt_3569_reverse	20	15	29	17	17	10	18	19	19	24
TGCGCCCAAACAACTG	alt_3569_reverse	54	41	81	49	44	73	42	58	59	51
CAGCTCAATTCATTTT	alt_3569_reverse	34	42	55	33	32	45	51	34	36	38
TGAACCTGAATGCTGC	alt_3569_reverse	72	68	89	92	73	65	56	86	81	75
CAGGAAAGGTATTCGA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
GCATCAGATATCGCAG	alt_3569_reverse	16	3	2	5	8	5	6	4	6	9
CATTCTTAGTCCGGCG	alt_3569_reverse	29	16	33	20	22	22	24	28	37	26
GGCGAATATAATCGTT	alt_3569_reverse	56	49	82	63	43	49	61	59	60	55
AAATTTTTGTTACGTA	alt_3569_reverse	57	61	90	75	59	57	54	69	63	62
TGTCCGCCTTTTCGTG	alt_3569_reverse	21	37	30	28	26	23	28	25	21	19
GACTCCACTTTACTGT	alt_3569_reverse	9	2	4	8	13	5	7	5	5	5
GTCAACTCCTTCTCAC	alt_3569_reverse	79	80	79	62	88	62	75	72	89	79
TCTTCGTCCGTCATCT	alt_3569_reverse	191	273	251	226	268	183	271	179	262	202
CGGGCCAAGGCGTGAC	alt_3569_reverse	15	15	24	15	16	16	22	20	13	10
CTGAGCCTTGAGCTTG	alt_3569_reverse	32	23	45	20	28	22	29	28	30	30
CTGTAACACTTAAGTA	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AGCCATATTGCTTGTC	alt_3569_reverse	67	64	89	72	50	66	67	59	64	51
TCGGGGATGCAATTTT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
TTCACACATTAATAGA	alt_3569_reverse	26	20	31	26	18	17	18	22	26	17
GTCACAAAGAGAGTTC	alt_3569_reverse	11	5	5	4	2	12	7	11	12	4
CATTTCATAATGCCGC	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
ATACTTCCGCGGTTCG	alt_3569_reverse	20	24	37	29	20	24	32	16	16	27
GGAGATGGCGAGACTA	alt_3569_reverse	28	29	32	31	28	44	29	33	24	34
CTCTCACATTCGATCT	alt_3569_reverse	24	19	29	21	25	16	19	14	32	24
TGCGGTTGTAAAGTGT	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
AAACCGATTAATGACG	alt_3569_reverse	45	21	46	50	52	46	23	40	26	46
TATCTCGTCCCGAGTC	alt_3569_reverse	0	0	0	0	0	0	0	0	0	0
GATGCAGTGTTCTTAG	alt_3554_RC	37	62	62	40	81	37	70	33	63	38
CCAAGTCCCGACAGGT	alt_3554_RC	41	113	44	37	99	24	111	24	89	34
TCCTTACCCCCTGGAA	alt_3554_RC	5	8	10	8	12	10	14	5	6	4
GAAATTCTATACTTGT	alt_3554_RC	12	10	7	1	11	4	23	1	12	7
CCTTCCGTCTACCTAT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CAGTGTCGCAGGTGCC	alt_3554_RC	18	31	15	24	19	15	18	13	24	13
GTTATAGTAGCTCCAA	alt_3554_RC	7	5	4	2	6	5	10	6	3	2
CCCGTGGTGTTATAGT	alt_3554_RC	44	77	68	50	97	56	78	57	89	52
GTTCGTCTATAAGAAT	alt_3554_RC	17	22	24	17	16	23	10	25	16	18
GCTATAATCTCTTGTT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CGAGGCGTATAGTTTC	alt_3554_RC	33	33	44	32	31	26	41	32	33	24
TCTAGGGCATAGGTCA	alt_3554_RC	14	11	12	10	14	11	16	11	17	14
ATTTACATGCCATATA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ATTAGTAGCGGGTTCT	alt_3554_RC	2	0	0	0	1	2	1	2	0	1
CATCATGTTTGTTGTG	alt_3554_RC	12	24	23	15	20	12	13	16	24	17
TTTGGCCGATACGTTA	alt_3554_RC	41	56	61	59	71	41	72	50	80	48
ATGACGCACACGCCGC	alt_3554_RC	134	101	137	151	104	119	109	122	117	97
ACTCGCGATTCTCGCT	alt_3554_RC	34	39	39	36	40	35	43	44	46	25
AGCGTAGAGCGCCCTA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ATCTGATCCGCGTCAA	alt_3554_RC	44	42	64	48	42	46	58	28	56	33
TCGGATACCATCAGAC	ref_3554_RC	43	74	78	63	56	39	67	51	78	46
TATTGATCGTTAACGA	alt_3554_RC	159	177	208	150	152	147	150	115	190	120
ATCGTCAGGCATACTA	alt_3554_RC	17	8	10	10	17	5	19	8	7	4
GGCATCAATAAGAACT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GATCCTCTTGCGCCGT	alt_3554_RC	18	46	22	24	35	23	44	30	48	16
AGTGTCCTTTTATAGG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TGCCTGTCTCGACTTG	alt_3554_RC	30	28	32	16	25	10	24	21	29	12
TAAAGTACTTGATGTT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ATACTGTCTGCCCTGA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ACAGTAATCGTTTCAG	alt_3554_RC	26	43	40	34	30	22	46	36	24	40
AAACTCGTTTGGGGTC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CGCGTGGTACCTGGGT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TTCCATTTCGGATTTT	alt_3554_RC	47	33	46	46	43	38	38	29	61	36
AGGCGCAGCCTCCGAT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GCCTATATGCGCAGTA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTTGTATCACGG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ACTTCTAACAGCGTAG	alt_3554_RC	43	46	50	53	45	54	41	48	43	44
GCGGGAAACTCTCTTA	alt_3554_RC	31	39	50	35	30	41	38	23	31	26
TGGTCCAGATTACTGC	ref_3554_RC	8	10	13	11	10	7	13	11	13	9
CTATGACGCTTGCACC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
AACGCTCTATGTCCGG	alt_3554_RC	33	28	44	29	35	28	38	25	26	29
TCGGTATATCTGACGT	alt_3554_RC	13	30	36	24	39	24	28	15	40	16
ACCATAATCAGGTGTA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TGATCAATCTGTGTAA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GCTATAATCTCTTGGT	alt_3554_RC	19	18	22	25	30	19	30	25	19	27
CATGCTAACAGCTCAG	alt_3554_RC	15	22	27	25	20	20	23	21	14	22
GCAGCGGGAATACCAT	alt_3554_RC	63	81	125	67	83	71	73	65	74	78
GTTTTATTAATCGCTT	alt_3554_RC	96	121	128	90	103	120	111	104	146	99
TACTTTAGAGAGCCTT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
AGCATTGCTCACATAC	alt_3554_RC	22	37	14	17	29	22	29	24	26	20
GTGCGCCCTCAATGGG	alt_3554_RC	5	22	14	14	25	5	29	7	21	14
AGTCGCAGGTTGTAAG	alt_3554_RC	5	8	9	3	15	9	12	8	8	2
AAAATTCAGATGTGAC	alt_3554_RC	25	22	35	18	16	23	21	11	20	8
CCTCGCCTACCATGCC	alt_3554_RC	26	38	36	35	62	32	67	21	75	11
AGAATGAGTATTAGCA	alt_3554_RC	33	43	39	33	41	36	41	31	34	34
CCCTCCCAGACATGTT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TACGATGCTAACTTGA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
AGACGTGGAACATTTA	alt_3554_RC	45	55	86	57	65	43	75	74	57	80
CGTGTTAGCCTTCTAA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CTCCGATTGTGTTTAT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TGCCCAAGGTACTATC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
AGGTAGCTCACCATTT	alt_3554_RC	25	12	16	17	9	10	22	9	22	15
CCTCCTTACGCCTCGT	alt_3554_RC	5	7	10	13	12	7	6	9	14	18
GCACGTAGCTAAGTAC	alt_3554_RC	38	58	56	59	58	53	57	49	52	52
TCACGGTTTTGGCTGT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ATAAAACCTCTTCCCA	alt_3554_RC	6	8	9	15	13	20	4	9	5	5
CCCTGTGTGTCCCACC	alt_3554_RC	44	49	37	50	47	27	31	39	52	39
CAATCCGTCGTCCCAG	alt_3554_RC	17	26	26	12	30	22	34	22	21	21
TTGGGATACATCAAGG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
AGATATCGTCCGGGGT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CCCACTTTAACGGGTG	alt_3554_RC	14	7	13	8	8	8	11	6	17	8
CGTCCCCGCATTCCCT	alt_3554_RC	11	19	15	12	30	12	24	10	31	13
TTCCGTGCTTACTACC	ref_3554_RC	174	201	234	184	220	150	200	147	205	161
TCTCCCTGTTTACTAA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GCGTTTCGTACTGATA	alt_3554_RC	34	33	52	52	36	44	47	36	50	28
GGCCTCTTGCTGGCTT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ACGTGGGCCCATTTCC	alt_3554_RC	77	82	96	115	102	109	103	100	102	70
TCAACGAGGATGATAC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTTATTTTGTTG	alt_3554_RC	71	79	110	67	104	81	73	69	99	64
GTGTATGAAATAGACC	ref_3554_RC	47	41	47	50	46	29	51	46	61	37
CAGGGCATACTCCGGC	alt_3554_RC	9	22	11	8	21	12	23	13	21	13
TTGCTGAGTCACAGAT	alt_3554_RC	20	14	27	25	16	16	29	16	25	17
GCCTACTTGGTTCTCT	alt_3554_RC	77	71	99	57	97	81	108	62	94	68
TGCGTCGCCGATCATT	alt_3554_RC	85	94	104	81	93	79	114	88	112	82
GCACAAATTCGTAATT	alt_3554_RC	3	3	5	4	5	5	2	6	7	1
TGGCTACGTTCTTCGC	alt_3554_RC	13	7	10	9	10	8	6	5	8	4
GGTCGTTTATCGTAGC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCCCGTGTTATA	alt_3554_RC	86	106	76	79	82	84	85	84	98	66
TTTGCGCAAGTTCGCC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GTTTCTTGCCCAGCGT	alt_3554_RC	0	2	1	2	5	0	2	0	0	1
AGATATACTTTTAGGT	alt_3554_RC	24	33	28	32	36	28	32	21	34	20
GGTCACTTGGTGCTTG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CGTGCTGTTCTTGAAC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GAGGGCTGTGTATTCT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CGGTAGCTCATTTCCT	alt_3554_RC	22	34	20	24	32	27	24	19	23	21
GCACGCGAAGCCTAGA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TCCCACCTGAGCCAGT	alt_3554_RC	3	5	7	2	0	5	1	3	1	6
ACAGTAATATCATGGT	alt_3554_RC	32	44	55	39	45	54	47	49	38	41
AAGTCCTCTGACGGTA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TTTTAAGTTATCGGGA	ref_3554_RC	3	4	6	8	2	3	4	4	7	6
ACACTTTTCATTCCTA	ref_3554_RC	283	309	358	297	311	248	360	264	362	229
CCGGTGCATCGTTTCG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CCAGTAGAGAGGGTTG	alt_3554_RC	44	48	74	47	53	46	65	39	41	58
TGCACAAAGATCAGAG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CTGGGTTGTTCAGGTC	alt_3554_RC	16	13	10	19	13	22	17	9	14	9
ATATTTTGGAAGGCGT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ACCTGTGCTACTTTTT	alt_3554_RC	21	32	29	23	22	9	35	14	32	22
GTTGGATCTACCGGCG	alt_3554_RC	5	14	8	20	14	6	19	8	15	14
TAGGCCGGATCACTAT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GCCCTAGACTGCCTTG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TCAAGCTTCGGGCGGT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TTTCATTGTTTGTCCA	alt_3554_RC	30	31	27	17	31	24	24	14	33	30
TGCAGGGTTGTTGTTT	alt_3554_RC	96	100	120	123	100	93	107	96	93	76
ATCGAAATTAGATATA	alt_3554_RC	7	8	6	9	4	14	8	5	14	13
TGTTCTTAGTCGTGAC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GTTATAAGCTGTGCGG	alt_3554_RC	25	32	39	27	37	40	32	32	44	31
ACTTGCGATTTACTCA	alt_3554_RC	65	78	71	85	79	44	60	62	84	67
ATTACTCACTCCTAAC	alt_3554_RC	13	24	23	15	10	8	18	7	17	14
CTGTTGGGGCACTCGT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CTCTTAGTCTAGAACA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGTTAACTCTTC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GGTATTGGATTTGCGG	alt_3554_RC	9	10	11	5	9	8	6	8	7	5
CCGACAGACCAATATC	alt_3554_RC	2	10	4	8	9	2	4	2	10	3
AACTGTCGGTCTTATT	alt_3554_RC	15	10	9	9	17	16	9	10	12	6
TACATCCTTATTCAGA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CACAGCTTTATGTGTG	alt_3554_RC	4	30	17	23	29	18	24	22	35	13
TAGCCGTCGGGCGCGA	alt_3554_RC	18	29	28	25	28	20	30	13	28	19
AAAAGTTTCTTATGAG	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GCCTCTATCTAGGTTT	alt_3554_RC	18	21	16	22	18	17	29	22	20	16
ACCAGTGCGTCCTGGA	alt_3554_RC	58	58	71	74	78	60	68	66	66	43
ATACTTATAGTGAGCA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ACAGAGTCAAATGAGC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
CTGTCGGCTTATCCAT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TCGCTATACCATCTCT	alt_3554_RC	31	25	26	22	22	31	34	33	34	17
TTTATTGAACTGCGTC	alt_3554_RC	8	13	15	3	8	5	5	6	7	8
CTTTAGCCCAACGTTC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCTTTCGACACT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
GCTATCCGTCTAGGTA	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
ATGCCATCGCTCAGTT	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TTGCAACCTCATCGAG	alt_3554_RC	3	16	12	15	9	8	10	8	12	9
ACGAAAACCAATAAAA	alt_3554_RC	30	27	29	31	18	25	21	31	23	19
CTACACTATTTCTAAG	alt_3554_RC	1	2	1	9	0	3	3	0	2	0
GATACTTACCATTCCG	alt_3554_RC	0	14	1	1	24	3	23	4	24	3
GTTTTCCAGACGTTCC	alt_3554_RC	10	15	10	9	16	9	16	12	26	12
ATTGGCATGAACAGAG	alt_3554_RC	57	54	67	47	67	48	63	57	63	19
CACGCCGACCTAACAA	alt_3554_RC	27	28	32	33	28	31	26	30	39	24
GACCCCTTTGATTTAC	alt_3554_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTTGCCAGCAAC	alt_3554_RC	44	41	46	50	47	64	50	40	42	41
CGAGCACGTAATGCAC	alt_3554_RC	106	147	112	124	130	111	148	102	112	78
AGGATATTCGAATCCG	alt_3554_RC	16	14	21	7	19	18	15	19	24	12
GCACTCTAAATGAACC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TCCGTTCATCCTGCGT	alt_3554_RC	12	12	19	15	13	8	15	5	15	8
TTAGATTATGTATTTT	alt_3554_RC	30	43	48	42	28	34	29	29	40	29
TCCGTGGACAGCTTAA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
GAAGTATGTAGGTTTG	alt_3966_fdr	9	12	14	16	16	8	15	4	5	5
TGTACTGTTACCAGCT	alt_3966_fdr	19	39	23	36	40	24	39	20	46	30
TTGCGTGGAGTGAATA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AGTAAATTCTCAGTGG	alt_3966_fdr	3	13	6	5	15	11	4	9	15	6
TGTTCCTCAGATATCT	alt_3966_fdr	36	42	53	45	53	40	65	40	45	47
ACCTATAAATTTTTTG	alt_3966_fdr	12	17	18	9	23	8	23	8	21	9
TCCCGTCCGCTCCCAT	alt_3966_fdr	19	16	21	21	23	18	30	11	33	14
TTGAGTGTTTTATGGA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTTACCGTTAGCG	alt_3966_fdr	99	221	126	108	213	104	231	103	248	80
GGTTTGTTCGTTGTCT	alt_3966_fdr	17	28	30	24	19	10	27	19	39	13
CTCTACGACGCATAGC	alt_3966_fdr	18	33	23	20	34	14	34	24	41	17
GGTTATGCTGGGTTGG	alt_3966_fdr	17	34	23	22	25	16	31	15	33	16
GGTCCCATATAAGCGT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTCGACCCCAGAC	alt_3966_fdr	46	65	55	56	82	59	70	39	64	44
AAAGGTCAAACCTCCT	alt_3966_fdr	12	35	14	19	42	15	34	13	34	17
GATTCTATCGGTAACT	alt_3966_fdr	9	18	9	12	16	16	14	11	23	12
AACACCATGAGACTTG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AATTTCCGGTGCGTCA	alt_3966_fdr	2	8	2	1	4	1	2	4	4	5
AGTCCTATTTTACTTA	alt_3966_fdr	33	34	33	42	46	29	43	20	36	25
AGCGATCAGTAGTCTC	alt_3966_fdr	13	22	26	14	25	25	27	18	28	11
CGATTTGCCGTTGCCC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAGGTGCTTAACC	alt_3966_fdr	65	99	75	65	130	73	124	54	121	51
TAGCACTACCTCAGGA	alt_3966_fdr	12	18	10	13	20	17	29	12	13	16
CGAATAGGTTATAAAT	alt_3966_fdr	23	33	27	43	26	21	47	34	29	22
CATGTTTCTCTCCGTC	alt_3966_fdr	2	5	2	2	8	3	9	1	11	3
ACACGCGTGCTCATTG	alt_3966_fdr	7	13	12	11	10	8	14	7	10	6
TAGCAAAGGAGTCGTT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AAGTAGCCATGGCTTG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGATCTGCCGATG	alt_3966_fdr	6	14	20	23	8	20	12	12	18	11
ACGTCCTATTAAGCTT	alt_3966_fdr	107	173	129	111	192	129	194	95	212	102
CAGCGTCTGAGGTATT	alt_3966_fdr	31	64	36	41	72	37	65	37	82	28
GTTCTCGCTCTTTTCA	alt_3966_fdr	31	57	41	32	62	24	52	29	58	29
TTATTGGTCGCAGACC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
ACCAATGAACGATACT	alt_3966_fdr	19	30	37	24	40	21	44	31	35	10
TGTTTCGAATTGGGCG	alt_3966_fdr	175	237	181	146	247	173	237	170	281	143
CCTGTGCGAGAGACTC	alt_3966_fdr	5	11	6	4	14	2	18	4	10	1
CCGATTTTTGCATTCA	alt_3966_fdr	1	5	3	1	2	4	4	3	4	3
CAAATAATAACGCCCC	alt_3966_fdr	53	89	51	57	95	48	80	49	79	52
CTCATCTATGCCACTC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGCATCGTGGAAA	alt_3966_fdr	6	8	6	7	9	8	9	5	18	3
GTGGCCGCCTGTCGCT	alt_3966_fdr	7	47	8	8	72	13	61	5	58	2
ATTTCGGTCAATATAT	alt_3966_fdr	9	7	15	9	22	3	10	6	4	10
AAACTTAAATTCAGGC	alt_3966_fdr	15	31	16	17	14	13	23	17	20	22
GTTGCGATAAATCGTA	alt_3966_fdr	9	8	8	5	14	6	12	12	8	4
TTGCTTTTCGTCCTCC	alt_3966_fdr	17	26	23	14	22	13	26	15	28	11
CATCTTCTAGCCGCAA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TCCAAACACTACCAAT	alt_3966_fdr	14	16	22	12	16	13	15	12	34	19
GAAACAATGGTTCCGC	alt_3966_fdr	8	8	11	3	7	8	5	7	11	8
CACCCTTTCAACGACA	alt_3966_fdr	1	0	0	0	0	0	1	0	0	1
CAGCCGTCTGGCAGCT	alt_3966_fdr	46	86	54	54	109	43	105	55	107	34
ACACTGGGTACCACTT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCTGTGTCAATGA	alt_3966_fdr	1	8	1	1	4	8	13	2	8	4
CTCTAAATTTTTAGCT	alt_3966_fdr	2	3	4	1	3	0	1	0	3	2
GCTTGTTTTACGAGCG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGCGTTAGTTTCA	alt_3966_fdr	11	13	25	15	20	30	15	14	25	26
CGCTAACTTGAGTTTA	alt_3966_fdr	25	46	19	21	42	27	44	25	46	34
CGCACTTTCATTCGTT	alt_3966_fdr	9	12	11	7	15	12	7	10	11	9
TTAGGTACGGCTTCTG	alt_3966_fdr	43	60	55	30	55	39	64	34	66	45
TTGCTTTGTTTAATGT	alt_3966_fdr	90	124	97	84	100	87	143	66	118	85
AGGAGACCCGTTGCAC	alt_3966_fdr	53	113	69	57	114	66	98	75	120	63
AGTGTCGCCCCCAGAC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAGCACCCAAAGA	alt_3966_fdr	17	23	17	25	33	30	24	11	40	16
CTATTACTCCGGACTC	alt_3966_fdr	66	77	75	65	110	52	99	67	106	56
ATGAAGTAAGTGTCTC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
GTAATCAAATACGGCC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCCGCCGGCCATA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TTGCAGCAATTTCGCC	alt_3966_fdr	15	22	19	12	20	7	19	15	37	12
ATTCCTGGTATTCGGA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
CACGGCTTAGCCAGCG	alt_3966_fdr	5	8	8	5	7	3	12	9	15	3
GTAAAATCCTCACTGA	alt_3966_fdr	4	4	5	2	6	0	9	3	9	5
TTCTGACTAGCTTGTC	alt_3966_fdr	24	35	17	24	26	19	31	22	37	20
TTGGTCAAATGTTCAT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AAGTAGGTTATGTCTA	alt_3966_fdr	29	28	22	17	33	15	36	28	33	14
TTGTTTCCCCTTTTTA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGAATCCCAAATGGTC	alt_3966_fdr	70	95	78	71	106	69	113	46	108	60
TACAGGCATGTTTTAT	alt_3966_fdr	7	4	4	13	7	4	11	2	11	7
CTTTGCTCAGTGCGGT	alt_3966_fdr	26	57	44	32	59	34	50	28	42	22
AGTGTTCTGCTCTGCG	alt_3966_fdr	14	17	15	17	17	19	18	11	20	7
TGTCCATGTCGATATA	alt_3966_fdr	1	3	3	1	2	4	4	2	5	3
AGTGCACAAGTAAAAC	alt_3966_fdr	0	2	1	3	3	1	0	1	3	0
ACGGTTCCTGAGCTGA	alt_3966_fdr	7	4	10	3	6	3	7	2	6	4
TCTTACCTAGATCAAG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTTAAGCTAATCT	alt_3966_fdr	7	8	3	10	6	4	4	2	7	3
GTTTCCTCGAGAGTGT	alt_3966_fdr	4	10	4	4	5	7	10	2	9	7
CATAGAACTGTCCAGC	alt_3966_fdr	6	13	6	6	23	8	7	7	15	11
CCCTTCGTGGCCACAA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTGGGAGCAGGGT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TGGAACCTCGAGATTA	alt_3966_fdr	6	2	5	3	8	6	6	4	5	1
TGTTCTTTTCGAATCA	alt_3966_fdr	6	9	6	4	15	4	19	9	12	7
TGCTTCCAGCTGGTCC	alt_3966_fdr	135	177	145	95	196	124	190	117	201	115
AGAATGAATATGGCGG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AAAAACGGGTGGATAC	alt_3966_fdr	17	26	16	9	15	18	15	20	17	6
GCTGGCTCGAATCTAT	alt_3966_fdr	11	22	10	20	22	14	10	9	20	14
TTTTCGGGCTCGCACT	alt_3966_fdr	3	2	2	2	3	1	2	4	5	4
CAACATGTGAGCAGTC	alt_3966_fdr	6	6	3	1	5	2	5	5	11	2
TGCATTCAAGAGTTTC	alt_3966_fdr	50	71	60	63	72	44	87	53	81	39
GGCGGATCTACCAGGC	alt_3966_fdr	9	13	7	12	6	16	26	5	17	12
GTAATTATATACGTCA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
ACAACTATGGGGTATA	alt_3966_fdr	24	56	39	43	57	27	45	24	51	28
GCTACGGTACGCCTCC	alt_3966_fdr	9	21	10	11	26	12	21	8	24	9
GGCTTAGGGTAGGTGC	alt_3966_fdr	18	24	21	9	20	15	16	11	24	8
TGCCATTAGCGCCAGA	alt_3966_fdr	1	1	1	0	0	0	0	0	0	0
GCCTCATGAGGCGGTA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTAATGGATGAC	alt_3966_fdr	18	23	19	13	30	12	24	17	29	9
TAGGGTCAGTCACGCG	alt_3966_fdr	31	41	25	37	43	27	27	26	27	31
TTTACCTGTAGAATAT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGTAACTATTTGT	alt_3966_fdr	2	5	6	5	5	4	8	4	5	4
TTCAAAACAATCCTGC	alt_3966_fdr	47	76	70	53	65	47	101	47	71	58
CGCGCGGTGTTCCGGG	alt_3966_fdr	51	80	53	51	63	40	90	45	74	62
CCCACTCAGTAGTACA	alt_3966_fdr	7	21	6	3	23	6	13	5	12	6
GAGTTCATGACGGCTG	alt_3966_fdr	4	11	9	13	13	9	15	4	13	10
AGACACTGTTTCTTCA	alt_3966_fdr	3	7	3	2	1	3	5	2	5	2
ATGCCTTTGAAGTTCA	alt_3966_fdr	54	59	69	38	71	35	79	38	76	42
ATCCGTAGATAGAGGC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCCCCATCTTAAA	alt_3966_fdr	23	27	26	18	27	19	19	13	32	13
TATACCCCTGCCTCTT	alt_3966_fdr	0	2	5	4	4	4	5	4	13	1
TTCTACGCCGCCCTTC	alt_3966_fdr	14	16	10	13	8	5	21	11	13	12
TAGAGATTGCGCACTA	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAAATTCCTACGG	alt_3966_fdr	39	50	31	36	55	42	53	33	79	25
AGGTACGGGACATCTG	alt_3966_fdr	16	21	11	12	24	13	27	16	17	13
CATCGCTGGTAAGGAT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTACCTGTTTCAC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGTGCATTATCCT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TCAAAAAGCTCGACTA	alt_3966_fdr	3	9	6	11	8	8	5	10	9	6
GATCGACCATGTTTGG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTTACCGCGTATC	alt_3966_fdr	6	26	15	13	29	8	33	12	38	8
TTGACAGCATGGAGTG	alt_3966_fdr	5	9	7	1	5	4	6	5	10	9
TTGTAATTAGTGCCCT	alt_3966_fdr	22	32	35	13	42	27	48	15	50	21
TACTCTGACCACTTGC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAAGGTACTAAAC	alt_3966_fdr	31	19	26	22	35	25	40	21	35	21
GACCGGTACGGGCGTT	alt_3966_fdr	23	55	24	20	44	23	53	20	60	21
TTCTCCGACTGCGGTC	alt_3966_fdr	10	19	8	6	26	11	20	10	24	19
GCTTCCTGTTATCTAG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAAATGTTACTGA	alt_3966_fdr	3	8	5	2	8	1	4	9	6	1
CCTGAGTCTTGTACAA	alt_3966_fdr	9	9	5	3	2	2	10	3	3	5
GCCGAGGCGAACGGCG	alt_3966_fdr	4	14	11	8	7	6	14	7	10	5
ATGGATCATAGTGGAC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TCCATGTCACGGGGGA	alt_3966_fdr	18	19	20	8	27	12	16	10	21	7
AGTGTTAGCTCCGAGA	alt_3966_fdr	0	3	2	0	0	1	1	2	1	1
GATGCTATCAGGCGGA	alt_3966_fdr	44	64	60	46	70	54	86	44	79	49
TAATACCTCAGATTGC	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTCCTTCTCCTG	alt_3966_fdr	7	8	8	3	12	8	8	8	13	4
AATGTGTTAAGGGTAT	alt_3966_fdr	73	103	82	75	112	61	111	45	87	63
CCATCATTCTTGTCGA	alt_3966_fdr	59	90	89	65	116	61	130	50	128	58
AAGCCCTCTGACTCGT	alt_3966_fdr	1	1	0	0	1	0	2	1	2	1
TACAGCTAAGGCCTGT	alt_3966_fdr	9	15	19	12	16	7	14	8	19	8
TAGCCTCTGGGTAGAT	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
CTTCATCTGCGTGGCA	alt_3966_fdr	13	19	16	7	14	14	28	12	22	10
CTCTTTAGTATTTCGC	alt_3966_fdr	5	4	1	6	8	1	3	0	5	4
CACGGAACTCATTGTT	alt_3966_fdr	6	15	13	13	17	15	19	9	9	12
GCTTAATTCTCATGTG	alt_3966_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTGTCATTTTCGA	ref_6048_new	9	4	7	4	9	2	10	1	2	4
ATATTGCTTTTCCATC	ref_6048_new	35	40	53	36	32	24	49	47	36	20
CAGGGGACTTCGGGGT	ref_6048_new	13	20	14	11	12	7	6	12	12	10
ATTGTTTCAACGCTTC	ref_6048_new	21	14	14	19	12	18	22	17	13	9
CCGAGCAACGAAGTAA	ref_6048_new	4	10	5	6	8	6	10	6	12	6
TACACAGACGCCTTAT	ref_6048_new	10	12	12	16	8	8	15	19	28	14
GCGAAGACGTCGATCA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GGATTATCCGTTCTTT	ref_6048_new	13	9	12	20	11	7	15	13	10	6
AACATTTAGATGGCTA	ref_6048_new	22	19	19	13	22	19	20	8	24	8
GAGGACGCGGAAGCCA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GTTCGACTCGCCATTG	ref_6048_new	28	38	29	22	30	24	27	21	36	18
TTCTTTACCGAAGCGA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
CCACATTGTCTGCGTG	ref_6048_new	25	32	28	21	27	19	19	17	26	20
CCATACTCAACGCATT	ref_6048_new	6	4	4	3	3	6	6	5	4	7
TGCTGGCACCTCCACA	ref_6048_new	13	7	14	10	12	9	20	2	10	9
TATTGAACGCTCTCGT	ref_6048_new	0	0	0	0	0	0	0	0	0	0
ATCTTCGGTTTATTTG	ref_6048_new	11	9	12	6	6	10	6	1	10	4
CGATCATCTTATGAGA	ref_6048_new	58	57	53	38	57	43	48	54	51	48
GCTGGACAGAGTTTTT	ref_6048_new	20	43	28	31	31	28	54	27	48	19
AAAGTTTTGCATGTAC	ref_6048_new	6	0	4	4	2	1	7	2	5	1
ATCGCTGACTGTCGCC	ref_6048_new	146	202	153	150	204	144	203	147	203	151
ATTCTGCGCCGATTCT	ref_6048_new	18	23	17	15	16	23	11	21	18	10
TCGACTCGTGCATGCA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
ACCCTATCTTTGGGAT	ref_6048_new	19	24	18	19	13	15	18	20	28	14
TTCAAGGCAGTGATAA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GACAACCAGCATCTGG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GAGTAGTAGTCGGCAG	ref_6048_new	14	6	14	14	5	15	12	6	16	4
GGTTGTCTCAACGGCC	ref_6048_new	0	0	0	0	0	0	0	0	0	0
ATATATCCTTGATATA	ref_6048_new	77	59	63	81	66	96	78	70	83	68
TAGATCAATATCGCTA	ref_6048_new	14	12	14	12	17	16	8	12	12	6
TGGTACGACACCCTTA	ref_6048_new	21	33	33	18	23	14	32	16	17	25
CTCCTCTGGAAATCAC	ref_6048_new	37	40	37	35	30	39	45	39	56	29
CATTAGAACGTCTCTA	ref_6048_new	40	49	47	39	59	38	67	52	64	37
TCTGAGTATGAATGAG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
CGTGGACTGCTGCAAA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
TGGCTTGACCTGCCTT	ref_6048_new	51	67	55	57	44	60	65	56	55	50
TCTCTGAGTCTGATGT	ref_6048_new	0	0	0	0	0	0	0	0	0	0
ATCTTGCTTTCTTAGC	ref_6048_new	53	54	36	56	44	56	46	44	56	37
CACATATTCTTCCTTG	ref_6048_new	27	12	24	26	17	18	15	10	20	11
AACATCAACTCGCATG	ref_6048_new	0	1	0	1	1	0	0	0	0	0
CCGATCGTATATCCCC	ref_6048_new	77	194	111	109	206	61	205	84	237	78
TGGTTTATTGCTATGT	ref_6048_new	52	67	78	86	81	62	74	64	75	73
CCTTCGCGAATCATCT	ref_6048_new	0	0	0	0	0	0	0	0	0	0
TTCCTTCGTTAACGTC	ref_6048_new	109	113	120	90	113	89	121	103	124	92
ATCCTGACGTTTAGAA	ref_6048_new	14	14	5	9	11	8	15	8	16	8
ATTCCTTCAGTATCTG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GGGTTGACGGTGTATG	ref_6048_new	1	0	1	0	1	0	0	1	3	0
CGGAAATATGCTTATA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
TCCGTAGGCTATTTGT	ref_6048_new	0	1	0	0	2	0	0	3	0	1
CAAGGCATAGCATATC	ref_6048_new	0	0	0	0	0	0	0	0	0	0
AGAATGGTTTTGGGTG	ref_6048_new	26	23	19	21	24	18	28	13	22	14
TATGCCCATCCACACA	ref_6048_new	47	45	77	60	43	38	62	52	47	44
TCCCGGTTTATTCTAT	ref_6048_new	38	26	52	25	31	23	30	18	24	36
GTGCAACCTTAACGTA	ref_6048_new	6	12	9	10	11	5	13	11	12	6
GGGTTGAGGGTTTCAC	ref_6048_new	17	18	23	6	14	5	13	11	13	12
CTTGGATAAAAACTGG	ref_6048_new	27	29	26	34	44	17	41	34	38	21
CGGATCAGTAGGCGCA	ref_6048_new	2	2	8	5	5	5	10	8	4	5
ATGCGTTCAACTTCAG	ref_6048_new	20	30	43	24	24	34	43	16	30	21
CCGGCGCCCGTATCTA	ref_6048_new	2	12	3	1	14	2	15	3	17	1
TATAGAGGCCGCTGAG	ref_6048_new	42	63	61	71	81	43	80	43	70	63
TATCTGGTTCTTTTTC	ref_6048_new	55	57	69	45	43	38	32	52	41	36
TAACCTTCGGGGTCAC	ref_6048_new	10	5	17	10	10	7	13	13	20	3
TCTTCCATGTAACCTC	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GGACAGATACACCTAG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
CAATTTGTGTACTTAT	ref_6048_new	25	29	21	21	41	21	30	29	21	21
CGCATCTGGCTCACTA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
ACACTTCTAGAGACAC	ref_6048_new	0	0	0	0	0	0	0	0	0	0
ACTCTTAGCCAAACTC	ref_6048_new	15	19	19	20	22	15	20	16	20	15
GTCTATCAGGAAGGAA	ref_6048_new	7	7	11	7	11	7	14	13	14	9
CCTGTGTAGCTAACGG	ref_6048_new	20	33	31	34	25	28	23	25	27	19
AATGGTTAGGGATGGG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GTACATTTAGCTGGAT	ref_6048_new	26	28	26	21	38	26	47	23	28	23
TACGAGTGGTACGCGC	ref_6048_new	14	13	5	11	7	8	3	8	9	5
CGACTAAGTCGATGAG	ref_6048_new	44	60	64	51	57	72	51	38	61	40
GCTTGGTTAAGCTGGG	ref_6048_new	41	46	74	64	53	52	56	54	62	44
GTTATCTGTGTATTCA	ref_6048_new	294	313	329	300	333	256	338	248	378	247
GCCTGGGTGTAACAGG	ref_6048_new	11	18	7	13	12	13	7	8	12	13
TGCTGGGTTTCAACCG	ref_6048_new	8	15	17	10	12	13	12	8	16	14
CTACGACTACACAATT	ref_6048_new	9	15	10	13	11	8	21	6	20	7
ATTTAACATCTATCGT	ref_6048_new	5	5	4	7	6	5	8	4	7	4
TCGCCTTATAGGAGTC	ref_6048_new	7	7	3	12	4	3	6	7	13	6
CGCTGTATTATACTCC	ref_6048_new	11	6	10	12	8	9	7	4	14	7
AGCAATGCGCACACTG	ref_6048_new	84	112	105	85	111	83	123	74	85	75
CGCATCCTCGGGGCCT	ref_6048_new	37	52	42	48	69	35	64	40	58	39
TGCTTTCGCTTGTATG	ref_6048_new	63	68	84	71	62	62	65	52	55	59
GCTCGTATGTGTATAG	ref_6048_new	7	5	12	4	12	7	6	3	9	5
TCGCCTGAGAATTTTC	ref_6048_new	40	59	50	43	60	39	47	32	52	32
TGTCAGGTCGAAATAT	ref_6048_new	8	14	12	13	13	7	16	9	9	10
TAGGCTGGTAGGTTTC	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GTAGTTTATTTGGCAG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
TAATTAGATGCTCTCG	ref_6048_new	13	18	13	9	26	7	18	16	16	16
ATGCGAGGTTGGCCTG	ref_6048_new	33	48	35	30	40	33	52	32	33	26
CCGTTCACGTCCCTAC	ref_6048_new	13	13	8	11	13	12	21	10	19	6
AACGTAGCCTTAGTCG	ref_6048_new	39	31	28	41	30	29	43	26	37	32
CTGTTCCTTCGTTCAT	ref_6048_new	21	22	40	23	23	26	21	22	30	5
GGGACCCCGGGTTACC	ref_6048_new	18	33	23	22	49	29	51	22	38	12
ATGGTCCTCTCGCCAG	ref_6048_new	18	27	16	30	24	23	20	19	21	23
TGTACCTGCACTTATT	ref_6048_new	53	79	54	49	75	63	59	56	94	51
AGGGTGTAATCCCTGT	ref_6048_new	5	2	1	7	3	7	10	1	5	8
ATATTCCAAGAACCGC	ref_6048_new	24	23	33	33	27	23	32	17	23	26
AGCGTAGGTGCTTGAA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
AACCAAAAGGCCAGTG	ref_6048_new	13	15	25	18	21	10	16	11	26	10
CTATACTTCAGTGGCT	ref_6048_new	0	0	0	0	0	0	0	0	0	0
CTTGTGCGCTATAGTT	ref_6048_new	23	14	19	14	20	13	34	16	24	15
GATAACTGAGTGACCA	ref_6048_new	78	114	113	67	95	79	110	69	129	70
CACCGATCCCCATAAG	ref_6048_new	6	16	10	8	17	8	23	6	21	9
ATCTAAGAACTCGTCA	ref_6048_new	32	24	34	27	23	20	25	28	37	26
GTTCCTGTTGGCTTCT	ref_6048_new	1	1	0	7	1	0	4	0	1	3
GTCGCTTGGTGTCATC	ref_6048_new	12	12	17	13	13	16	19	6	16	6
ATATACTGAGCCACGC	ref_6048_new	18	20	10	21	13	12	20	14	25	19
GACACATTTGTACAGA	ref_6048_new	21	24	31	31	41	27	29	21	30	21
CGCCGCGCCGCTGTGT	ref_6048_new	0	1	0	0	0	0	0	0	1	1
GTTTTTGATTTCTTTG	ref_6048_new	11	20	13	9	10	14	15	4	11	10
TAAGGGATCTGATGCT	ref_6048_new	17	8	19	18	12	8	12	18	20	12
TATTGCAGCGAACTGG	ref_6048_new	5	6	17	5	13	11	12	6	6	14
TCGCGGATCATCACTC	ref_6048_new	51	55	52	52	64	46	58	41	56	44
GAAATTACCATGAATG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GGCAGTCCCCGTAGTG	ref_6048_new	65	79	73	58	85	68	82	76	90	72
GTGCTCCATGCGCCTT	ref_6048_new	119	173	166	109	151	116	167	86	188	87
GTTCAATTACGTTCTT	ref_6048_new	15	31	24	23	35	22	23	19	26	18
TTAAATCTCATGTTTT	ref_6048_new	0	0	0	0	0	0	0	0	0	0
AAGCACGGATATAAGG	ref_6048_new	37	51	45	45	31	50	48	38	44	46
CGAATGGTTTGGGGTC	ref_6048_new	0	0	0	0	0	0	0	0	0	0
TTGGCACTCGTCATCC	ref_6048_new	15	12	9	7	8	4	3	4	11	8
AATGGATAGGGATGGG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
CATCAACTTCGTCATG	ref_6048_new	29	20	34	18	20	41	29	23	36	24
GTTGTAGTCTTGGCCC	ref_6048_new	30	35	30	26	44	24	40	26	42	14
ACTTGTTGATGCATCT	ref_6048_new	128	128	160	145	115	105	124	109	179	106
CCAGGTTTAAATCTTC	ref_6048_new	1	5	2	6	9	2	2	4	5	1
GGTACAGGCGAGGTAT	ref_6048_new	47	58	61	59	59	34	57	28	56	50
TTTGGAATTAACGCGC	ref_6048_new	33	40	35	39	52	32	57	49	48	22
ATGTTGATTAGAACAG	ref_6048_new	0	0	0	0	0	0	0	0	0	0
GCCGGGACGAATTCTG	ref_6048_new	41	48	53	37	44	37	49	55	53	41
CAGCAGAGTCCCGGTA	ref_6048_new	84	108	110	106	116	98	112	94	144	90
GTTTAGTCTCTACCAC	ref_6048_new	4	8	9	4	12	9	5	6	9	4
CTCCCACCCTGCTGGC	ref_6048_new	0	0	0	0	0	0	0	0	0	0
TTATCTTCGTTCCGTG	ref_6048_new	102	109	133	108	122	89	127	103	124	90
GTACCACACCATTTTT	ref_6048_new	0	2	0	0	2	1	1	3	1	2
GTTCAATTACATAAAT	ref_6048_new	59	38	60	37	42	46	52	31	49	41
GGTTTCCTTCTTACTA	ref_6048_new	0	0	0	0	0	0	0	0	0	0
ACTTCCAGTGCTCGTC	ref_6048_new	39	35	27	28	39	27	32	27	37	21
TAGATTTATACGCTTG	alt_1093_RC	19	12	16	13	25	15	21	18	7	14
CAAGCTTCTTCGAGAT	alt_1093_RC	21	16	28	14	14	16	13	23	16	19
CTTATGAAAGTGAGCC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TTTCAGCTTTCATGGA	alt_1093_RC	27	25	24	27	16	16	27	15	24	26
GCTGATTATCTGCATA	alt_1093_RC	160	136	178	155	125	131	154	125	122	107
TCCTTCTGTGCTTACT	alt_1093_RC	13	23	13	15	24	18	24	13	18	22
GCGGGCGGCCCAGGTA	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TCCTGGGGAAAGCTAC	alt_1093_RC	85	67	95	89	68	78	80	70	68	67
AACAGCCTCGCAGCGG	alt_1093_RC	22	39	23	30	33	24	36	18	37	11
GCCGCCGCCCATGAGT	alt_1093_RC	23	23	29	27	36	31	16	29	29	34
TGGGTTTTTCAGATTG	alt_1093_RC	4	6	8	5	4	2	3	0	4	5
TGTTGTTTTAAATGAG	alt_1093_RC	37	26	39	33	21	36	29	24	32	33
TCCATTGTGGTTCAAA	alt_1093_RC	49	35	45	58	43	44	37	41	38	32
ACACTAAGCCTCATTC	alt_1093_RC	71	89	98	88	88	82	94	55	88	80
TATCGGATTTCAACGG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TGTCGGGATCTGCGAG	alt_1093_RC	16	19	26	13	12	14	17	6	19	12
TGTCATGTTCAGTTTC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CAGGCTTCTAGAGGTG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CTACCTCTCAGGGTGC	alt_1093_RC	90	67	106	90	86	78	84	81	78	78
CCCCCGCCTCGACTTG	alt_1093_RC	19	32	23	32	41	28	28	16	50	18
ACAGTCTCCCTTTAAT	alt_1093_RC	18	22	20	13	19	15	25	21	20	17
GCGTTGGGGGTTGTTG	alt_1093_RC	267	241	347	293	236	252	250	238	270	241
TGTCCCCTTGTCCGCC	alt_1093_RC	76	55	97	84	87	53	68	80	96	55
CCTTCCGGCTTTATTA	alt_1093_RC	84	73	103	83	79	59	81	75	108	74
TTCAGTTCCCGTTGCC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GTATAGGGCGCGTCTA	alt_1093_RC	108	148	146	129	146	124	152	118	122	95
AACCCGGGTGTTGAAC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CGTGTTCCTGAAGGTC	alt_1093_RC	229	224	269	236	277	240	263	195	256	191
CAGTCGGCATCTCTCA	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
ATATTAAAGACTTGTG	ref_1093_RC	72	151	101	83	157	75	139	80	154	84
ACACGTATTGGAATAA	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TGAGGGGTCGTTCCTA	alt_1093_RC	19	11	14	12	8	14	13	11	10	15
CACGGACCGCGTCGTT	alt_1093_RC	11	4	9	9	11	2	6	7	9	5
CTCCCGGGTTAACATC	alt_1093_RC	14	51	39	29	62	18	59	22	63	17
CTTGGTCTAGTTGCTT	alt_1093_RC	16	15	21	17	7	12	13	16	12	8
TAGATCGTCCTGCTCG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TCCGACCAATTTCTCG	alt_1093_RC	101	102	139	100	128	102	113	97	125	87
CTGTTGCGATTCGCAT	alt_1093_RC	6	14	10	13	8	9	6	12	16	9
GGTAAAGGTATCGAGT	alt_1093_RC	15	20	21	16	14	19	23	6	13	18
CGTCACTTGCCAATTG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TCGCATCCCAGAACCA	alt_1093_RC	74	120	105	98	138	110	160	88	138	99
TGCAGTATATTACGTC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TTGCATACTTAGGGGA	alt_1093_RC	31	35	30	37	32	40	36	25	48	28
GTTACAAAGAGTCCTT	alt_1093_RC	26	16	17	21	20	11	20	19	14	13
CTGGCAGTATTATGTA	alt_1093_RC	17	11	22	17	21	16	26	18	16	18
ATTTTTCCACTCCCTG	alt_1093_RC	0	1	0	1	0	0	1	0	1	1
CGTGTACCTGAAGGTC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CACAATTTTTCTTGGC	alt_1093_RC	13	3	11	14	6	2	14	5	8	7
TGTGCACTTGCCCGAG	alt_1093_RC	97	91	114	108	93	77	90	82	100	97
ATGTTCCCAATGCAGG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
GCTCTGGCCCTCGACC	alt_1093_RC	13	23	8	11	16	10	19	13	15	9
CTGCCCGAATGTTATT	alt_1093_RC	12	35	39	21	50	16	40	22	39	20
TGCATTATGTTTGCGC	alt_1093_RC	3	2	6	5	5	0	5	2	4	2
ACACTCGGCAGAACGG	alt_1093_RC	3	8	4	3	1	2	2	2	1	3
CGGGGGGCAGTCTCCC	alt_1093_RC	24	16	24	16	14	15	15	14	24	21
GTCTGACGAACTCGAA	alt_1093_RC	91	93	119	121	91	75	85	94	87	79
AGTTATTGTAAGAATT	alt_1093_RC	7	16	10	14	13	11	8	8	24	13
TCGTACGGGGTTCAAC	alt_1093_RC	13	21	15	18	13	23	17	13	22	16
TGTAAGTTCTCCTACC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TCCAGAGCCTCATAGA	alt_1093_RC	13	20	19	10	14	13	18	5	18	7
GCCTTACCCAACTCAC	alt_1093_RC	16	29	24	15	22	18	47	11	24	15
GGTTTCGATCTGACTA	alt_1093_RC	8	6	5	4	4	1	2	4	3	4
TGCGAGAGCTCACAAC	alt_1093_RC	89	73	121	89	120	77	113	82	90	78
AACAAGCTTCTGAGTG	alt_1093_RC	7	6	10	11	5	7	4	4	7	12
TCCCCAGCCCGCGCCC	alt_1093_RC	27	23	37	26	17	19	32	31	17	21
TCACTGCGCACGTACC	alt_1093_RC	14	19	27	22	16	16	20	15	23	14
GTTGTTACCCAGAGTG	alt_1093_RC	12	26	20	16	20	17	19	18	25	16
AGCCATTCAGACCATC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TCAATCCTTCAATCCT	alt_1093_RC	160	154	186	183	153	174	163	146	170	137
TACGTCGGTTTGGTCT	alt_1093_RC	3	5	6	4	4	3	6	3	6	8
TATTTCGTTGATCACG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
AGTGGTCTCCCAGCTG	alt_1093_RC	31	22	31	30	27	27	25	24	29	22
GACAAGCTCGGTGTTC	alt_1093_RC	33	26	31	19	21	24	35	30	36	25
TATAGCTCCTCGCCCG	alt_1093_RC	15	24	20	14	27	8	27	13	28	18
GCGGATATTGTTGGAC	alt_1093_RC	55	49	74	48	55	51	49	43	50	43
TGTCCTTGTGCTCCGA	alt_1093_RC	152	125	154	139	107	119	120	124	134	107
AAACGATTTTAGAGTA	alt_1093_RC	107	81	146	116	91	72	89	101	83	79
CATGAGCCCAAGACCT	alt_1093_RC	8	11	12	12	13	13	23	16	13	12
GTTGTGCAATTCCGCC	ref_1093_RC	57	95	70	50	85	57	105	39	97	43
ACTGTGATACATCTTA	alt_1093_RC	77	67	100	71	67	77	67	65	76	61
CGGTATGCGTACAACA	alt_1093_RC	27	49	43	37	25	39	51	38	43	33
GTGAGCCTCACACATC	alt_1093_RC	53	52	48	72	38	43	51	54	68	39
CGATTTTTGTCCGTGT	alt_1093_RC	18	8	16	11	26	17	6	18	14	16
TTGTCCATGTCCCCTG	alt_1093_RC	62	102	86	83	78	78	102	82	102	65
TACTGGCTGTCGTTTA	alt_1093_RC	10	11	15	3	13	12	9	16	12	7
GTTTGATGCACACATT	alt_1093_RC	13	16	21	15	14	17	14	19	22	8
ATCCTCAGCACGCTTT	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
GTTAAAGGTGGAGCAT	alt_1093_RC	71	85	87	58	86	56	90	78	95	65
CAATATATAGCAGGAA	alt_1093_RC	196	219	239	234	225	203	228	197	196	157
CGTTCAGTGCACTGCA	alt_1093_RC	10	17	11	17	20	13	8	9	18	12
AGCCCACATTCAACGG	alt_1093_RC	30	39	46	36	40	46	40	40	34	32
GGACCTTGGTCACGTC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CTAGTTATCATTATTG	alt_1093_RC	54	50	44	47	42	47	51	40	54	45
TCCTTGGCAGAGGGTG	alt_1093_RC	45	68	59	50	73	43	59	51	87	58
CGTATGCTATTTTAAC	alt_1093_RC	52	38	50	50	39	41	45	44	51	39
TCCGCCACGGATTGGA	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TTTGTGCAATAGCCGC	alt_1093_RC	20	8	16	15	11	11	15	16	18	13
GCATGACGGGTTTTCC	alt_1093_RC	7	25	7	7	16	12	16	11	13	7
GTTAATTGCTTACTGG	alt_1093_RC	157	197	221	198	186	179	205	181	249	159
GGCGCGCGTTTAATGC	alt_1093_RC	11	8	24	14	11	15	11	13	11	16
TCTATGACCCATCACC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
ATTCCCAAGTGATTCA	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
GGGGGGAATCACAGGC	alt_1093_RC	13	13	15	14	10	17	15	8	8	11
ACTTTTCTAAGGACGG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
GCCACCTGTCCCCAAT	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TACCATGGTATCCCTT	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TTATCATAATGTAGAG	alt_1093_RC	57	35	52	41	47	36	58	48	52	39
AAGACGGCAAACATGC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
GACAACCTCAAGATAA	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
AATTTCGAATTTGTGC	alt_1093_RC	16	16	20	27	13	22	17	13	20	13
ATTCTATCGTCTAGCG	alt_1093_RC	34	37	53	43	32	41	46	30	61	32
GGAGTATATTTGAAGC	alt_1093_RC	77	86	97	71	63	68	77	74	85	62
GCCTTCGCGTTCCGAG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TAAGTCTCTTATGCTC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CCTCGGGCATCATGCA	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TCCGGCACTCCTAGCG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CTCCAGCCTAGACTTG	alt_1093_RC	7	17	9	2	13	6	16	6	21	8
TCAGCGCATATCATGT	alt_1093_RC	123	160	183	145	114	129	174	111	149	108
GTGCGGCAGTGCTACT	alt_1093_RC	169	191	233	213	209	161	204	143	220	169
ATGTTTGTTACTACTT	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
GTAAGTATAGCCAGGC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
ACCGTTTTGTCATGGT	alt_1093_RC	11	12	14	7	3	9	11	13	14	3
ATGTTATAATCCGAAC	alt_1093_RC	12	10	12	11	7	11	13	9	10	9
CGACGTTCCAGTATTG	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
TGCTCCACCGCGCGCT	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
AGTGTGTGTTCTATCT	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
CTGTGTGTTTCCGGCC	alt_1093_RC	0	0	0	0	0	0	0	0	0	0
GGTGCGTTTACGTATA	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
GACTCACGCGCGATAG	alt_4037_reverse	1	0	1	2	1	2	2	2	1	2
GTTTTAGCATTGTTTC	alt_4037_reverse	64	52	65	58	60	50	55	61	74	63
TTCCACCTTATATCGC	alt_4037_reverse	23	19	24	20	23	25	26	25	22	15
ATTTTAGTCATCCACC	alt_4037_reverse	80	67	64	70	67	76	50	79	62	71
TAATAGTTACGAGCGC	alt_4037_reverse	102	87	95	86	77	102	70	83	89	59
CTTAGTTTACTGATGC	alt_4037_reverse	12	16	13	8	20	19	12	15	15	13
CCCAGGGTTATCTCAA	alt_4037_reverse	13	28	17	11	21	22	23	22	22	19
TTCTCCCAGGGCGAAG	alt_4037_reverse	12	9	15	14	14	5	16	11	8	12
AACCCGGCATTAACGC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGCTATCGATTGA	alt_4037_reverse	13	5	15	12	10	6	11	8	3	11
AAAAGCGACGTCTGTC	alt_4037_reverse	26	24	20	21	20	25	28	23	12	20
GACAATCTACAAAGCT	alt_4037_reverse	15	18	13	4	11	13	11	14	14	9
AGGCTACGTTGTATCA	alt_4037_reverse	2	10	9	4	6	2	7	8	4	8
AGATTTCTGAACAGCG	alt_4037_reverse	115	90	118	94	93	108	91	75	101	78
ACACATGGTTACCATG	alt_4037_reverse	9	3	9	16	7	9	17	8	6	9
CTGTCTTGTCTAACGT	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGATCAACTGCGC	alt_4037_reverse	2	11	5	1	13	0	18	1	11	3
GTGCCATGGTACGCTC	alt_4037_reverse	2	2	5	3	0	2	4	2	0	3
GTTTCTATGGAGCTTC	alt_4037_reverse	2	1	3	3	2	1	1	0	3	0
CTTCATAATCGTGTTT	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
ACTTAATGTACCATGG	alt_4037_reverse	11	16	22	16	16	13	14	15	16	18
GACCGCTGTTAGGTAT	alt_4037_reverse	21	11	16	13	13	10	11	19	12	16
CATCGCTATCTTCTGA	alt_4037_reverse	29	18	34	30	24	30	21	32	33	24
TTCTATTTCGTCATGA	alt_4037_reverse	47	68	57	39	71	34	61	28	59	28
GGATCAGCTGAGCGTT	alt_4037_reverse	10	9	9	14	12	13	12	7	11	6
GGCTTGTGAATGTGGG	alt_4037_reverse	50	51	67	45	38	51	47	35	39	39
TCCAAGCTTGGACGGT	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCACCACCTTTTT	alt_4037_reverse	41	36	58	37	37	46	32	35	42	38
CTTTAGATTAGTTATT	alt_4037_reverse	27	15	29	12	15	12	22	16	17	18
TTCAGGTATTATTGAA	alt_4037_reverse	88	77	89	68	73	84	91	81	93	75
AGAGAGCCACGTGTTG	alt_4037_reverse	60	73	87	82	91	66	91	71	78	77
AACGCTAGCACGTACA	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGTTAAACCATTC	alt_4037_reverse	71	40	60	61	57	53	49	44	47	53
TTCAGCCCATTCATTA	alt_4037_reverse	31	30	26	26	39	34	26	18	26	21
AGTGCCTGTGAAATGG	alt_4037_reverse	20	26	42	26	28	21	25	21	34	36
TTCAATGACCGCTGCG	alt_4037_reverse	34	31	45	41	30	24	36	26	38	24
TTAGTCTGTCTAGAAC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TATGTCGCGCTTCAGC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TGATCGTCTTTAATTG	alt_4037_reverse	24	38	28	29	36	20	32	30	45	21
AATCGATCGTTTCGTT	alt_4037_reverse	60	42	47	50	37	64	33	41	30	50
ATCGAGGCCATGATCG	alt_4037_reverse	14	22	19	25	19	12	14	18	24	12
GGGCCCGCAATAGTTA	alt_4037_reverse	48	56	48	28	54	51	52	33	62	25
ATCTCTCGGTCGATTC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
GCTTAGTCTACAGCTC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
ATAATCTTGCAGCTTT	alt_4037_reverse	284	205	337	302	239	309	198	263	185	256
AGATACAGATGAAATT	alt_4037_reverse	25	12	24	14	16	18	18	13	17	9
TTAGTCTTGTAGGCGG	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TGCGACTCTAGTTGAC	alt_4037_reverse	92	107	141	82	125	84	121	90	107	71
GGCGTTGTCCTTTACC	alt_4037_reverse	27	43	43	31	30	18	17	37	28	28
CGAAGTCTGATTTTTG	alt_4037_reverse	73	66	89	70	51	64	83	77	89	69
GTCATTATACTTTTTA	alt_4037_reverse	38	40	51	43	41	43	34	35	35	32
GAAAAATCTGGTCATG	alt_4037_reverse	141	132	177	136	127	142	142	121	144	133
GACCAATGTTATTTTT	alt_4037_reverse	24	12	22	20	16	15	18	8	5	23
TTAATTCTTTATGACA	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTAAGTTCGCGAG	alt_4037_reverse	114	86	155	95	87	107	82	93	92	105
CAGCGCGATATCGAAC	alt_4037_reverse	307	277	385	325	273	309	297	291	274	283
GGCTCCCCCGAGGCCA	alt_4037_reverse	59	35	54	57	38	41	52	42	55	42
TCTTCATCACATCGTA	alt_4037_reverse	14	12	16	8	7	15	11	11	22	12
CGGTTATCGGATTGGC	alt_4037_reverse	22	21	27	10	12	21	12	9	11	9
AGCCTTCTCTTGTTTG	alt_4037_reverse	21	27	23	15	30	19	31	19	23	15
CCCGTATTTAGTAACC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTCATTGCTCCACAAG	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGCTGGACTCAGA	alt_4037_reverse	2	2	2	5	3	3	3	2	2	3
GACGCTATTTAAGGTC	alt_4037_reverse	11	19	21	20	12	26	13	9	15	15
TGGCAGTTTGGTGTAT	alt_4037_reverse	17	16	24	19	14	12	13	13	13	18
GGACTTTATGAGCCAG	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAGAAAATTACTC	alt_4037_reverse	31	24	30	26	23	24	38	28	31	25
ACATCGTGGGCACGCG	alt_4037_reverse	95	79	127	142	115	97	98	91	95	92
TGTATAGGGCCCATAC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTGAAAACAACTT	alt_4037_reverse	89	102	112	103	82	84	88	77	78	74
TGATACCGGTCTACGA	alt_4037_reverse	26	31	45	27	44	35	33	35	40	33
TCTATCAGGTCGGGGA	alt_4037_reverse	17	13	15	7	17	14	16	14	5	11
CTTTCACCCCCATCTG	alt_4037_reverse	19	15	26	16	21	22	28	12	25	19
AATCTGTCATATTATT	alt_4037_reverse	2	3	7	1	1	1	3	3	1	3
GGACTGAGTGTTGTTG	alt_4037_reverse	37	42	46	35	55	53	38	46	47	27
TTACGTAGTTACGGGT	alt_4037_reverse	145	115	151	158	142	152	144	145	128	121
TGAATAGGCAAGATAG	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
ACCTCCGCGCTCTTAG	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TGTACACCGTCGCCCT	alt_4037_reverse	108	95	134	94	127	82	120	87	122	102
CGGACGTATTGGTGAG	alt_4037_reverse	10	4	7	9	4	4	5	4	2	3
GATTCAACTGCCAATT	alt_4037_reverse	4	4	8	7	1	3	6	2	7	6
TAGTCCTATCTAACAA	alt_4037_reverse	20	11	18	7	20	15	14	10	21	12
TCTACCGCGTCGGACG	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
AATTCATTCGTGTGTA	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCTGTTTAGCACC	alt_4037_reverse	45	27	56	29	33	35	44	40	36	31
GCTGAGTCTCACCCTC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGTTCACCAGCAG	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTATTGTCGGCGC	alt_4037_reverse	72	70	81	72	51	76	92	62	73	58
GTGTAGAAGGGAGCCC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
TTATACACAATTGCGA	alt_4037_reverse	150	162	160	161	148	137	138	103	187	121
CTTCTTTGATAACGTT	alt_4037_reverse	2	4	7	3	2	2	1	8	4	2
TTCCTAATCACCTGTC	alt_4037_reverse	23	18	21	18	18	25	19	23	27	30
TGGGTTCTTAAGGGTC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
GCATGATTGCTTAAGC	alt_4037_reverse	0	0	0	0	0	0	0	0	0	0
AATAGTACCCCGATTT	alt_4037_reverse	6	8	11	11	15	16	10	10	14	6
TCTATTCTGACCATGT	alt_4037_reverse	101	89	96	82	47	74	80	76	74	65
CTCAGACACATGTTTT	alt_4037_reverse	30	49	33	58	35	27	39	34	38	39
TCAGTTCCACCGCCCG	alt_4037_reverse	5	9	10	4	7	9	6	6	4	1
CAGTTGATGTCATTTA	alt_4037_reverse	69	47	78	66	63	59	65	52	73	67
ACGTTTCTGCCTACAA	alt_4037_reverse	3	9	9	8	7	5	5	8	14	7
AGTTCTATACGTTAGT	alt_4037_reverse	79	83	116	85	81	90	88	71	99	79
CGGGTACTTACCCAGT	alt_4037_reverse	14	92	23	23	131	15	118	21	105	14
GGAGGTGTATTTAGGC	alt_4037_reverse	13	11	12	15	10	7	12	13	15	14
GGACATGTATTATTTT	alt_4037_reverse	37	19	29	34	25	30	27	22	23	21
AAACGCTGGACACCCT	alt_4037_reverse	108	96	147	134	112	115	149	99	102	109
TTCCTCCTTAGTGTCT	alt_4037_reverse	13	10	21	15	26	20	12	10	15	15
CTAAATGCAATTCAAT	alt_4037_reverse	155	138	196	153	166	131	139	149	139	136
GTGTAAGCTCGTGCAA	alt_4037_reverse	0	0	2	0	1	2	1	0	3	0
AGGCCTTATGCTACAG	alt_4037_reverse	15	13	16	16	8	18	9	11	13	8
ATCGGATTTACATCTC	alt_4037_reverse	7	7	7	5	3	3	8	7	5	6
ATACCCGAGGCTACTG	alt_3970_fdr	13	10	8	10	4	9	9	10	7	10
TTAGGCGCTTTTTCCG	alt_3970_fdr	11	15	10	10	6	7	15	8	7	12
GCCGCGTCCCGTTCCA	alt_3970_fdr	6	4	3	3	3	4	6	6	3	1
TCACTGGATTTTTAAC	alt_3970_fdr	4	9	4	11	6	4	5	6	2	4
CTGTTGATCTTACGGC	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
ACCTAATCAGGTTTTA	alt_3970_fdr	74	33	68	64	45	62	44	56	53	57
CTCGTATCTAGTGAGG	alt_3970_fdr	31	25	43	34	42	32	44	44	30	27
CTGCTCTACACTTAGG	alt_3970_fdr	20	36	22	27	30	31	24	21	32	20
GATTACACGAGTCAGA	alt_3970_fdr	13	3	7	9	9	6	12	2	6	8
TGCGGCACTCGTGAGT	alt_3970_fdr	76	72	86	85	80	84	73	77	56	75
CGGAAAAGTATGCCTG	alt_3970_fdr	46	38	67	52	40	54	40	64	59	47
TGGGCTTATCGGTCTG	alt_3970_fdr	48	46	57	41	34	42	49	40	50	39
GTGGCTCCTGTGTTCA	alt_3970_fdr	37	33	42	46	37	34	29	31	44	36
GCATTTTGGCCCCAAT	alt_3970_fdr	105	119	145	121	97	121	98	112	120	101
GCACCTATAAGCGTCC	alt_3970_fdr	7	12	12	9	16	11	19	11	17	10
TCGGTCCGGTAAGACG	alt_3970_fdr	23	22	16	17	16	19	25	13	16	21
AATTAGTGTTCACATA	alt_3970_fdr	77	72	108	91	59	80	81	89	112	76
TTTCAGTCAACTCGAT	alt_3970_fdr	12	8	16	17	25	7	10	21	11	9
GCCGGAGACGCGCTCT	alt_3970_fdr	51	37	57	35	36	35	49	38	48	39
AAGACTAGCGTGTGTA	alt_3970_fdr	10	13	16	4	9	9	13	12	5	13
TCCCAAGGTCTACCTT	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
TCATTTTGACTGGGTA	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
CTTTAAAGGCATGTAA	alt_3970_fdr	3	2	3	5	4	3	2	9	4	7
CAATTCTGCAGATTTA	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
AGCCACCTCTCGCGCA	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
GTATGGACATCTCTCA	alt_3970_fdr	24	23	38	15	14	24	27	23	12	16
CAAGTCTAGTCTGTGG	alt_3970_fdr	81	66	75	56	72	46	70	48	73	58
TTTGCTATCTATAGTC	alt_3970_fdr	33	42	42	34	40	36	54	30	45	26
TCTCTATTCTAGTCTC	alt_3970_fdr	44	24	34	31	44	21	35	27	34	24
ACTGCACACCGCGCTT	alt_3970_fdr	11	30	23	11	21	22	21	16	15	21
TCCATACTATTTGCGG	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGGACTTCGCTCC	alt_3970_fdr	50	46	37	38	38	39	41	39	42	47
TAATCACTTCATCGGC	alt_3970_fdr	16	14	17	20	18	16	14	7	20	18
TTGCAGCAGATGAATT	alt_3970_fdr	73	60	95	64	43	61	70	60	57	48
ATTCTATTACGCCATC	alt_3970_fdr	8	8	14	5	9	4	9	7	7	13
CATGCACGCCCCTATG	alt_3970_fdr	25	37	28	40	32	27	28	30	31	23
TGCAATCTATTGTGGT	alt_3970_fdr	12	9	14	10	10	15	13	12	14	9
GCTTCGATCAGCCCCA	alt_3970_fdr	98	61	93	70	72	74	46	74	75	74
CCGTACTTGTGTCTGT	alt_3970_fdr	10	23	22	14	13	14	15	11	12	13
GGATATTTTGCCTCGC	alt_3970_fdr	89	58	85	58	46	63	58	70	72	56
TTGGTTGTCGTACGTG	ref_3970_fdr	210	221	259	214	215	216	273	223	255	204
TAACCTGTCGCCGTCA	alt_3970_fdr	42	43	53	42	42	50	38	64	46	45
GTTAGGCATTGCGCCT	alt_3970_fdr	51	48	63	58	65	48	68	43	71	47
CTACACTCGTGGAATA	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTATTACGTAACT	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAGCTATATCGGC	alt_3970_fdr	29	33	24	27	33	28	30	20	27	25
TGTACATCGTTGCCGT	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGTTCACACAGAA	alt_3970_fdr	41	36	57	39	52	40	52	34	36	32
AGTCCTAGGTCGTTAA	alt_3970_fdr	33	31	31	27	33	43	35	24	45	30
GCCATGCGGCTTTACG	alt_3970_fdr	20	6	14	11	13	15	9	17	13	14
TTGTTGCCGTTATAAC	alt_3970_fdr	26	14	27	21	27	18	24	28	19	19
TGTTAGTTTTACATGG	alt_3970_fdr	42	35	56	35	34	32	30	39	37	34
AAAGTACCCCTCTGCC	alt_3970_fdr	25	15	15	31	30	24	17	28	27	22
TCAAGCATACATCGGG	alt_3970_fdr	23	24	15	23	16	17	22	19	26	20
TCTGAACGAGCGTCAT	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
TACCCACTTCTTCATG	alt_3970_fdr	13	9	12	16	6	14	14	18	4	10
CATACAATGACACCTG	alt_3970_fdr	20	25	20	23	22	31	20	29	13	15
GCTATGATGCTTATCG	alt_3970_fdr	4	1	3	1	4	2	5	0	3	2
CCTCCTTTGGTGTCGA	alt_3970_fdr	17	16	17	18	23	15	11	13	20	8
TGTCTTATAAGGTCAA	alt_3970_fdr	1	4	3	3	3	3	4	2	3	5
GAATCTTTGGACCACC	alt_3970_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTGATCGAAGGCT	alt_5983_new	18	29	27	29	31	25	40	18	39	24
ATCAGGTTCGTCGACC	alt_5983_new	226	334	287	250	346	241	331	224	367	209
TACACGAAAGCACGTC	alt_5983_new	0	0	0	0	0	0	0	0	0	0
GGCAGGTTAAACAGCT	alt_5983_new	0	0	0	0	0	0	0	0	0	0
ACATTTCTAAATGCAA	alt_5983_new	13	15	16	16	18	14	23	21	23	11
TCGCGTTTTTAAACGA	alt_5983_new	38	42	35	29	41	40	62	37	56	36
GTCGCAAGATTATGCT	alt_5983_new	60	56	54	38	78	41	65	35	65	38
CTCAAGCATCGGCGAG	alt_5983_new	31	28	15	26	33	23	18	28	26	18
TTGAGGGCGTCCTCGT	alt_5983_new	0	0	0	0	0	0	0	0	0	0
GTTCCTTTTCACGCAT	alt_5983_new	112	156	132	104	126	112	139	92	159	108
TGGTATGCCTGGTTCA	alt_5983_new	26	33	21	30	40	21	53	37	46	19
AGATTCTATTACCTGG	alt_5983_new	0	0	0	0	0	0	0	0	0	0
TTTCGGATGGGCCAAA	alt_5983_new	161	244	184	175	218	164	241	156	279	161
CGAGGCAGTTCGGTTT	alt_5983_new	38	40	40	27	33	23	50	35	53	28
GTTCAGGTATTGCCGG	alt_5983_new	26	28	21	25	33	22	32	22	44	21
CATCGGCTTGATCCAA	alt_5983_new	121	134	151	148	114	120	150	107	156	100
GGTGTCCGTCATCCAC	alt_5983_new	37	48	67	47	48	38	58	36	82	27
TAGTAATTGGTTTGAC	alt_5983_new	17	36	27	15	36	20	42	16	34	13
TTGGAGCTTATAGCCG	alt_5983_new	0	0	0	0	1	0	0	3	2	0
GCCTTGCTGTATACCC	alt_5983_new	0	0	0	0	0	0	0	0	0	0
TTGTAAGTAGGCATCT	alt_5983_new	3	11	8	6	11	6	5	5	9	2
TTCGGAATTAAGGTCG	alt_5983_new	69	95	72	48	92	70	79	41	82	44
GCTGCAACTCGTCCGT	alt_5983_new	5	12	9	9	9	2	6	6	11	0
CGTGTTCTCCCTCCAT	alt_5983_new	2	2	4	6	3	3	1	0	5	0
TTTACACACGAGATTG	alt_5983_new	114	172	121	127	187	113	166	120	178	108
TATCGGAGTTGAGCCG	alt_5983_new	69	83	97	72	93	64	80	61	107	51
GAGGAACTCGACATAA	alt_5983_new	27	33	19	16	36	23	23	18	25	12
CTGAATGTCGCTTTGT	alt_5983_new	20	22	29	27	37	23	36	30	38	19
AATGCGACTCTGGGGA	alt_5983_new	0	0	0	0	0	0	0	0	0	0
GTCTGACGGGCTCCCC	alt_5983_new	0	0	0	0	0	0	0	0	0	0
AGGTAGAACTTATATT	alt_5983_new	161	209	207	150	213	139	242	148	220	129
TATAGTCGCGCTTACT	alt_5983_new	26	27	14	9	28	21	22	17	25	18
TAGCCTGTCTTAGGCC	alt_556_reverse	13	8	14	9	13	2	8	4	8	10
GGGTTCTTCATGAAGA	alt_556_reverse	15	9	20	9	13	12	16	11	16	10
TCCACTTTTATTACTC	alt_556_reverse	22	69	29	27	48	36	77	28	62	38
GTCCACTTCACCCGGT	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGTTATCTCGTCC	alt_556_reverse	29	33	38	22	35	28	26	33	37	27
TAGCTGCCGGCTGCGG	alt_556_reverse	34	38	52	52	46	37	60	43	57	29
GCCCCTTCAAGCACTA	alt_556_reverse	30	53	51	38	39	41	55	45	62	31
TGTTTAAACTAGCAAG	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
GAATTGATTCCATTTA	alt_556_reverse	32	35	37	32	24	20	33	18	30	22
CAAACTGACACCTACG	alt_556_reverse	35	42	28	32	46	25	35	22	34	25
ACAGCACCCGTGCAAA	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAGGTACTTCCTC	alt_556_reverse	22	17	20	19	24	14	17	10	43	8
TTGTCCTCCGCACAAT	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
GAACTATTCGGGTTAT	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
CACGAAGAACGGGCTA	alt_556_reverse	54	86	86	54	74	53	109	58	93	75
CCTCGCAGTGTCTCGA	alt_556_reverse	4	17	8	8	17	1	18	8	12	4
CGGTTCTAACATCGTT	alt_556_reverse	24	31	38	30	39	20	31	39	32	24
GAACCACTTCCGGGCC	alt_556_reverse	30	30	29	38	38	26	26	22	31	34
GTTATTTCATCTGAGG	alt_556_reverse	4	2	2	4	5	3	5	2	10	2
TGGTATAATATGGTTC	alt_556_reverse	25	11	18	18	32	11	21	22	38	16
TATGGACGAACAGCAG	alt_556_reverse	35	32	40	36	19	24	30	28	34	27
AAGAAGTGCGTAATTG	alt_556_reverse	1	4	4	3	3	0	8	3	4	3
TCATCTTGGCCGAAAC	alt_556_reverse	26	32	41	29	31	26	36	36	29	19
GCGCCTAGTCTGTTTG	alt_556_reverse	11	17	15	15	17	13	19	17	25	15
TAGAACCAGTCAGTGC	alt_556_reverse	32	51	44	40	44	33	77	23	41	40
AGCATTGAGTGCAGAT	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTGGAAGTGTCGT	alt_556_reverse	36	100	61	53	65	49	57	58	94	42
TAACTCTCCCTTTTCT	alt_556_reverse	58	96	58	69	94	55	101	44	83	38
GTCTTAGACATTGAGA	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
TAAAATCACCCATGTA	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCCGTTCATATGG	alt_556_reverse	36	56	48	30	48	44	43	35	53	32
ATATACAAGTTTTTTT	alt_556_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCGTGCGCGCGTG	alt_556_reverse	8	10	14	11	6	7	12	4	14	6
GCGGTGAGCATATCGC	alt_556_reverse	37	51	47	46	69	43	77	36	72	44
GATGGCTTAGGATTTT	alt_556_reverse	77	77	82	80	75	64	85	55	75	52
TGCATTCTTTAGTCTA	alt_556_reverse	13	19	10	4	12	13	19	14	19	5
ATAAGGACACCCTGTA	alt_556_reverse	4	0	2	1	1	4	1	2	0	1
TGTGCAACAAGATAGG	alt_556_reverse	70	93	118	96	110	76	106	65	102	68
TTCCGCTTCATCTGTG	alt_556_reverse	12	24	11	9	32	27	16	16	24	21
CCTTTTTACAAGGCAC	alt_556_reverse	9	20	14	13	17	19	15	18	13	7
AAACGCCGCCGAGACT	alt_556_reverse	70	95	79	82	72	59	97	59	94	66
TTTCAGATGGCATCAT	alt_556_reverse	9	16	24	19	13	10	12	10	13	6
ACAACCTTCTCAGCAC	alt_556_reverse	21	35	32	26	36	12	29	15	37	16
AGCACGGGTTTACCTA	ref_3143_reverse	11	21	22	14	15	11	17	10	15	21
GTGCGTTAACCTAATT	ref_3143_reverse	22	34	54	30	36	20	37	35	36	31
CGGATGCTTATCTGCC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTGTACTGAGGG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGAATTGTCATCGTCG	ref_3143_reverse	77	69	93	75	91	80	66	61	81	64
AGGAGTCTCGCTAGTT	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TATCGCTGGGTGAGGA	ref_3143_reverse	13	9	10	8	9	9	16	9	10	12
CCAATTATTGATCAAG	ref_3143_reverse	1	2	4	3	11	2	7	4	4	5
TCGCTCACTCGGCTAC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CCATTTCGACGATCCA	ref_3143_reverse	21	33	30	27	23	22	21	20	30	27
GATACTTGACGAACAC	ref_3143_reverse	95	60	121	88	86	79	101	65	107	49
GTGTATTGCATTAGGA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCTGGCAAGGCAT	ref_3143_reverse	99	113	121	81	116	75	126	88	120	81
ATATACCTGGGAGCCG	ref_3143_reverse	59	74	51	53	79	58	55	60	65	50
TTGCAACAGGTATCGT	ref_3143_reverse	7	11	4	5	4	4	5	1	3	7
CTAAGGGCATCTCTCC	ref_3143_reverse	14	11	11	20	5	15	17	12	7	11
CGTGTAGGACTGTGTG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGCTTTATCACC	ref_3143_reverse	36	44	39	31	39	25	29	35	41	36
TGCCTAAGACTTACGA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
AACACCAGTTCGTTCT	ref_3143_reverse	14	24	23	36	20	21	25	29	40	25
TTATTATCGGAACTCG	ref_3143_reverse	17	17	26	21	15	20	21	8	22	25
GTGGACGTTCTATGAA	ref_3143_reverse	20	16	10	15	19	10	12	12	17	10
TGCCCGTTCATGGTTG	ref_3143_reverse	79	60	89	83	73	61	55	82	64	80
GCACCTCTGCTTGGGT	ref_3143_reverse	0	2	1	0	3	2	0	1	1	2
TTCCACACTAATCGTG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CACTTTACTTCGGCGC	ref_3143_reverse	2	0	4	1	0	1	2	0	2	2
TAAGTAAGTGGCCCGT	ref_3143_reverse	26	18	27	29	24	31	25	18	31	10
GTGGGACATCATTCAT	ref_3143_reverse	32	31	38	41	32	23	32	36	23	28
TTTCCGCCGCATAACT	ref_3143_reverse	64	52	80	47	48	57	57	63	62	53
CCATGTTTTCTTTCTT	ref_3143_reverse	5	7	11	16	8	7	9	7	7	3
AGCGGCTCCGGAACCG	ref_3143_reverse	70	42	65	53	60	75	60	67	53	44
CAGCAGAAGTGCAGGT	ref_3143_reverse	29	37	37	43	34	34	41	42	40	27
TACGTGTCATTATTTA	ref_3143_reverse	172	136	196	183	152	163	143	156	142	128
CAGGATATGGACTCAG	ref_3143_reverse	2	1	1	1	1	1	2	1	3	2
ACCGCTTCGACAAGCG	ref_3143_reverse	7	5	13	2	6	8	15	6	11	6
CTAAAGTATTTCTGCG	ref_3143_reverse	26	30	40	25	21	27	31	25	23	15
GCAAGTTTCCGCGTAA	ref_3143_reverse	2	0	2	2	1	2	2	0	0	0
AGGCAACAAAGTATAG	ref_3143_reverse	2	2	5	3	3	9	1	2	5	2
AACTCTGATCATCACC	ref_3143_reverse	18	28	30	34	35	34	28	21	26	32
ATTTCGGTTACCCGTG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGGTTTAAGTCAA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGTATGTTTGCGACAC	ref_3143_reverse	56	53	68	38	31	48	55	35	77	57
TATTAGTGGCGCATTG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GATAGATGGCTTACTA	ref_3143_reverse	90	85	126	95	96	86	89	80	116	96
ACACACCTCTTGGTAA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCACACGTGTTGT	ref_3143_reverse	7	5	11	8	11	6	11	11	16	10
TTCGGTTATATGATCC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CGAAGGTTCACCCCAG	ref_3143_reverse	35	37	39	43	42	29	40	52	39	33
ACACACCTCTTAGTGT	ref_3143_reverse	10	14	15	8	12	8	11	14	15	8
AAGGAATTTGTAATGA	ref_3143_reverse	3	4	6	7	4	0	5	4	2	2
TAGGGTTCGGACTGAT	ref_3143_reverse	32	19	32	37	16	32	20	22	24	16
CCGGGGGTCCACTACT	ref_3143_reverse	0	7	3	7	5	4	1	7	4	4
AATATTGTTGTTTCGG	ref_3143_reverse	42	30	28	25	16	28	21	25	27	21
GCTATCTCTCCGACGT	ref_3143_reverse	54	64	59	57	90	55	53	52	88	50
CGAGAGCCTCCATCCG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
ATCGACTCCAATAAGC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCTACAACCCCTG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TCGCATCAGTATTGAG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCATTGCGTTGTC	ref_3143_reverse	30	20	19	35	22	25	15	25	23	18
AATAGATATAGATTAC	ref_3143_reverse	67	42	76	72	71	53	54	58	45	64
CTTTCCCCTTTTTTCG	ref_3143_reverse	28	44	45	46	54	30	54	37	81	28
CACACGAATTATAAGG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TTACACATCAGCACGC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTCGTAAATCAGT	ref_3143_reverse	10	13	9	19	19	19	19	15	20	16
CAGACCACGAATAGGT	ref_3143_reverse	61	96	104	72	97	67	116	65	118	85
AACTTAGTTAATGATA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
ATACCAGCTTGATGCT	ref_3143_reverse	0	3	3	6	6	3	5	3	5	5
TTACCACCTGAATAAA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCGGTCATTTGTC	ref_3143_reverse	23	19	23	30	27	22	18	16	28	21
CGGGCCGTCTCTGGGG	ref_3143_reverse	50	47	52	43	40	53	52	37	49	34
CTAACAGAACCTTAAG	ref_3143_reverse	9	12	8	9	16	8	14	4	19	13
AATTCATGAATGGGAG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TACCGACTTCCGTATT	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GGAAAAGCGAGTCGCA	ref_3143_reverse	8	10	7	6	5	6	3	9	3	2
AGTCCTATTCGATCGG	ref_3143_reverse	50	44	59	74	74	62	64	62	56	62
TTTCACGGCATGCAGC	ref_3143_reverse	14	8	23	23	10	18	15	15	5	19
GGCGTCTTTAATTTAT	ref_3143_reverse	180	189	243	195	207	181	206	185	187	155
TTGGGGCACGGTCCAT	ref_3143_reverse	73	73	94	74	70	70	71	88	64	63
GTACTCGAGAATTACG	ref_3143_reverse	5	9	7	13	7	8	6	8	5	7
GTTCTCAACTCTTCTC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CAGAACAATGCGGACT	ref_3143_reverse	79	77	99	71	97	78	109	68	138	69
TTTTTACTTTTTAGAC	ref_3143_reverse	28	42	34	44	44	32	42	27	48	41
TGTACCTGCATAATTT	ref_3143_reverse	15	23	39	27	21	17	16	18	22	23
AGGGCACAACCGTTTA	ref_3143_reverse	35	47	68	67	58	63	56	55	51	37
TTAGGCTTCATTCATT	ref_3143_reverse	12	19	16	8	20	13	20	10	28	14
GTTTCCGGTAGAAGTG	ref_3143_reverse	35	42	41	41	50	31	36	33	42	35
AGTTCCTAGTTCTTGG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TGTATCTTCCTGTTTA	ref_3143_reverse	22	14	16	17	13	12	21	17	14	14
TTTACTATCCTGCCTT	ref_3143_reverse	74	69	92	74	66	72	89	71	105	85
CTAGGAGGTCTGAATA	ref_3143_reverse	27	26	43	16	50	38	37	24	47	24
TGTTTACTCTACCTAA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTTCATTCGGCTT	ref_3143_reverse	4	3	9	1	9	1	10	3	7	5
CATCATGCGATCGAAT	ref_3143_reverse	69	76	115	82	85	88	95	62	77	69
ATCTAGCTATATCATA	ref_3143_reverse	16	14	12	14	11	14	15	10	29	22
GCCATTCACGCCTGTC	ref_3143_reverse	3	4	5	2	4	1	2	3	3	3
GGTTGGATGCCACTCC	ref_3143_reverse	24	25	33	34	28	29	33	36	26	34
TTTTTTCTTGCGAGTT	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGCTTGCGCGCGC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
ATATATCGAGTGATGC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCGTAGCATGGGACCT	ref_3143_reverse	3	13	2	6	1	3	5	1	1	0
GAGTCTACCTCATCCG	ref_3143_reverse	18	25	28	21	28	27	33	19	28	21
TTATTCGAAGTTTGGG	ref_3143_reverse	133	133	181	180	147	123	153	130	163	125
CATTGGCTTCAACGCA	ref_3143_reverse	4	4	8	7	4	6	6	5	9	4
TGTCCTAAGGGCCTGG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
AACAATATAGTAATCA	ref_3143_reverse	11	10	25	16	17	12	16	11	13	12
ACACTCTTTTGTGCCG	ref_3143_reverse	5	8	2	1	6	4	5	1	4	4
CAGACATTCCGGGATC	ref_3143_reverse	4	4	4	4	3	5	7	7	8	7
TAGCCAAGTTACTCCT	ref_3143_reverse	54	39	46	30	68	48	53	47	37	51
CTTGTGCCCGGCCGGA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
ACGTCACATATACCCG	ref_3143_reverse	34	26	44	40	26	26	32	16	33	28
ATAAACACCTTGAGTA	ref_3143_reverse	35	31	42	42	32	37	35	52	43	33
GGATCGCTGTCTAACA	ref_3143_reverse	23	23	23	25	20	13	30	14	20	18
CCATTGTTTTGAAAGG	ref_3143_reverse	77	72	53	77	56	63	65	61	55	55
CCCGTTTGCGACATTT	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CAAGGCAGATACATTG	ref_3143_reverse	7	6	9	8	11	9	12	8	9	4
ATACGACTCTACTTCT	ref_3143_reverse	0	8	4	6	6	4	23	2	8	0
TTTGTCTTCTTGAAAG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCGGTAGCGATCA	ref_3143_reverse	11	17	19	21	16	20	19	18	16	11
GTCTAATAATTGCTCG	ref_3143_reverse	4	8	6	5	7	6	17	7	4	4
CGTTAACTGATTTCCT	ref_3143_reverse	91	79	116	98	89	86	108	99	75	79
ACCGTTGTTTACTGGA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TATTCAGATATATGAA	ref_3143_reverse	19	39	49	36	28	42	36	30	33	26
ATATTCGAAGTTTGGG	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GACTGGTAGGTCATTA	ref_3143_reverse	15	5	17	24	9	13	11	19	19	6
GGCGTTAACGGCATCT	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTTATGTACTCTC	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTTTCTAATAGGT	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTTGGTGAAGCAC	ref_3143_reverse	124	125	143	83	138	115	148	122	129	101
TGAGCGACATTTCACA	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGAATCTTTGCGC	ref_3143_reverse	5	4	13	4	6	9	5	10	4	2
AGCTGACACCTTAACG	ref_3143_reverse	120	95	172	139	154	129	137	130	128	113
CCGACCAATATGCTCT	ref_3143_reverse	0	0	0	0	0	0	0	0	0	0
ACAATCTCCATTATTA	ref_3143_reverse	41	52	70	42	50	59	50	43	45	45
CTCCATGAGCATAGCA	ref_3143_reverse	12	20	22	12	13	17	24	17	27	18
TTACAGCTCAGTATTG	ref_3143_reverse	114	99	119	77	96	85	106	88	105	82
AGATTCATGCCTTTTG	ref_3143_reverse	46	65	71	65	46	84	63	35	57	57
AGTGCTAGCTCGGTCA	ref_340_negative	33	59	55	55	49	45	75	35	48	39
CTCGTACAGGTTACTG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CGCGCCCCTACATCCC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GTTCCCAGCCAACATA	ref_340_negative	16	22	13	14	21	15	24	15	23	15
GGTTACCATTTGGGCA	ref_340_negative	25	14	25	20	15	20	14	20	11	16
AAAGTTAGGCCGCGTC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TGGCCCTCTGGGGCTG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GCAAGAGCGCGCTGAA	ref_340_negative	451	374	547	503	361	438	348	461	428	404
AGCCACCATTTGGGGC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TGATTCTAGTGAATGA	ref_340_negative	55	60	66	80	72	72	78	75	89	54
ATAAGCGCAGACACAT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
AGTGCAAACTCATTGA	ref_340_negative	28	32	21	22	17	18	21	19	33	22
CGCAGTCATGTAATCC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
ACTCACGGTTTCCGTA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CAGTCAAGGTCCGTTA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
AGCATACACTTTCCCG	ref_340_negative	1	3	2	0	7	1	4	4	9	2
GACGACTCTCCTTCTT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TAGTATAGCACGCCTA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GTATAACTTATCCCTA	ref_340_negative	110	85	134	98	111	87	88	117	86	81
AGGTGGCAGCCTGCCG	ref_340_negative	29	26	29	35	45	22	40	31	23	31
TGTACTGTCGCTGACA	ref_340_negative	11	19	27	20	28	16	13	17	33	22
TGACGCTCGGTTACTC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TTCCCGTGCTAGATGT	ref_340_negative	12	6	6	3	4	4	6	10	5	6
CTCAGGCAGCACCTTA	ref_340_negative	19	8	20	19	17	14	21	12	12	13
TGTTACGCTTGTAGGT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TCAGTCAACCCGCACT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TCGGTAAAATCGTTAC	ref_340_negative	48	29	41	41	57	34	41	24	49	41
TAGGTGAACATCTCGT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
AGGGCAGTCTAGAACA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CATTTCTGTGCCGATT	ref_340_negative	13	16	15	19	4	17	12	9	12	9
ACCCTGTGATAATCGA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
ATTTGTCTCGGTTCAT	ref_340_negative	219	217	271	265	239	215	211	203	254	189
GACTCCTCGGTTTCGC	ref_340_negative	3	13	4	4	13	3	15	3	9	2
ATGAGGTCGGGTGTAC	ref_340_negative	50	58	74	77	44	60	58	49	56	57
TTTGTATCATACTCGG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
ACCTTTGTACTTAACT	ref_340_negative	113	106	128	106	107	103	124	88	137	112
AAAAGGCCCCCTCAGG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GGCCGAATCGTTTGGC	ref_340_negative	99	70	84	90	84	91	82	100	52	77
ATGCCTAACCGCCGCT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GGCGAGTCGTCAGTCC	ref_340_negative	6	4	5	4	6	8	5	5	5	3
CTCCCTTCGACACCGT	ref_340_negative	34	52	58	43	42	33	56	42	38	40
CTTCATGTTAACAGCG	ref_340_negative	29	44	42	27	32	37	35	47	34	31
GAACTGCGCTCCTCGG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TAGTCAGACCCGTTAA	ref_340_negative	67	55	76	50	46	49	54	50	62	46
TGTTTGGAGGGGCGTT	ref_340_negative	216	229	241	231	225	199	249	228	270	163
TTTCACCGGACCAGGC	ref_340_negative	85	69	80	63	67	52	79	91	67	54
GCTCTAAGTTCTAAGC	ref_340_negative	37	38	30	19	41	24	48	24	40	22
TTTCTGTGTCGGGGAA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TTTTTGATGTGATCCC	ref_340_negative	21	12	29	22	15	25	17	18	15	14
GGTGTAGATGCCCGAA	ref_340_negative	58	41	75	55	48	55	57	45	49	44
TTCAACCTGCCCATCC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TGACTATGAGAGATTG	ref_340_negative	92	95	100	98	63	83	73	89	70	68
TGTACTATGCCGGAGG	ref_340_negative	40	39	56	46	56	29	37	33	42	30
GTTTCATTTTTCATAT	ref_340_negative	119	97	170	139	98	125	128	123	124	139
TGCTTCGAGTAGCATA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TGCTTTAAGCATTGTG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CTAACTTGGTCTGTAG	ref_340_negative	27	30	26	21	29	23	20	32	25	20
CACAACTGTCTTGGTA	ref_340_negative	1	4	7	3	3	4	7	4	2	3
CTTGACGCCGTGGGCA	ref_340_negative	113	109	154	133	105	108	129	123	145	88
TCAGGTAAACGCATTG	ref_340_negative	11	18	10	11	15	17	6	11	5	12
GTATTTGTACGCTAAT	ref_340_negative	38	35	52	55	50	34	42	37	52	45
GTTGGAACGATTTAGC	ref_340_negative	5	4	5	3	3	1	2	4	0	5
CAAGCATTGCGCATCT	ref_340_negative	25	29	45	30	32	29	29	19	38	34
TCCTCATTTTTTGGCT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
AATGCACCGGTCTCAG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
AGCCTTTTATAATGAA	ref_340_negative	10	7	10	14	8	11	8	14	9	9
TAAATTCAAGTTTTGT	ref_340_negative	38	31	39	47	23	49	32	24	38	28
TTAGTCATTTGTTTTC	ref_340_negative	163	129	137	111	120	126	116	116	125	93
TGTAATCAGCACTTTT	ref_340_negative	23	17	33	34	18	35	33	25	38	37
ATATCGCGTTGTATTA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CTGGAATTATAACTCA	ref_340_negative	16	21	30	18	13	18	26	9	23	21
CGAATTTGTCTAACTT	ref_340_negative	0	0	2	0	1	1	0	1	1	0
TACCATTCTCACTTAA	ref_340_negative	5	7	8	3	12	6	9	13	11	8
GTGTCTCATGACAGAG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TTCGCTTGTGATCCAA	ref_340_negative	9	19	16	20	24	26	20	20	18	12
AACACTCTACTCTATT	ref_340_negative	17	16	18	16	19	15	26	16	20	8
ATGGGGCGACATTTTA	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TTTTTAACAGATATCT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CGCACGAATCTTTTTC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
AGGGTTATTTCCTTAT	ref_340_negative	41	32	44	46	42	43	43	31	52	28
TGGACAAGTGCACAAT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GCGCTGTGACCACTCG	ref_340_negative	34	47	49	33	33	32	47	41	48	35
GAATTCGTGGTATCAT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
ACCCGCGATAGCTTCG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CTGATCGGTCATCTTT	ref_340_negative	26	46	34	26	34	25	47	39	55	27
TCGTGCTCAGGTTTTG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TAGCTAACGCAGCCCC	ref_340_negative	14	8	17	13	18	10	21	17	23	17
TCTCGCCATCCCAGTG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GTAATCAACCCCACGC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TTCCTCATGCGTTACC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
TAAGTCAGGCCGCGTC	ref_340_negative	0	0	0	0	0	0	0	0	0	0
CTCACAAATGCAGGTG	ref_340_negative	0	0	0	0	0	0	0	0	0	0
GTGCACACCCCAGTGA	ref_340_negative	10	29	17	8	11	5	12	8	20	9
GTTTCCATACGCACCA	ref_340_negative	7	5	11	11	5	6	5	8	6	5
GTGGTTTTTTGCGTTG	ref_340_negative	103	87	125	93	88	90	90	92	96	79
GTTATCTCTCGTTTTT	ref_340_negative	30	21	22	24	16	29	19	20	19	33
CCGCCTATATTTCCCT	ref_340_negative	3	9	4	2	13	7	13	8	14	1
AGTATTGTAGCATTTT	ref_340_negative	0	0	0	0	0	0	0	0	0	0
ATATCGTGCACCCTTA	ref_340_negative	29	14	27	17	26	21	17	26	14	15
GCACGGTCTATAGGCA	ref_27_negative	4	55	8	12	48	7	46	10	56	5
TAACCATACCTGCGTC	ref_27_negative	6	10	6	8	18	6	14	3	10	4
CTGACTATGTGAGAGT	ref_27_negative	12	14	6	8	19	4	17	4	16	7
ACGGCTGTAAGTCAAG	ref_27_negative	3	1	7	2	1	2	2	4	3	0
CGCGAGAATGTCGCCC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GGCTGAGTCGCGATCC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TCGATGGATGAATACA	ref_27_negative	79	129	116	88	111	78	128	81	122	81
CCCGCTCATTACACGG	ref_27_negative	25	77	47	52	74	40	86	42	64	41
CATGAAGTATCTAACG	ref_27_negative	1	8	4	2	4	3	5	2	7	3
AGCTACCTGTATTTCA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
ATAAGTGTCCGCGTCA	ref_27_negative	10	24	20	9	26	13	18	8	17	9
GGCCCTTTCCTTTTGT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CATACCTCCCGGCATG	ref_27_negative	31	30	50	35	38	27	43	22	34	21
GCTTGACTTCCTCTAA	ref_27_negative	29	45	36	44	46	24	42	36	49	27
TGCCAGAAAAAAGCGT	ref_27_negative	3	12	13	6	13	6	21	8	18	12
CAGTCGCTTCTAGAAC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CGCTGGCCGGTGCAAC	ref_27_negative	6	17	6	16	13	9	22	13	15	12
TCTTTTCTCAATTCCA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
ATCTTTGGTTGCTAGT	ref_27_negative	65	86	66	58	111	56	94	57	111	53
AACCCTTCGGCTGGAG	ref_27_negative	16	43	32	16	27	24	34	20	39	7
CTACTGTAGTATACCC	ref_27_negative	13	33	18	15	22	16	30	16	29	7
ATTCGATCGAAATTAT	ref_27_negative	1	0	2	0	1	0	1	3	0	0
CGCTGATCAATTGTGA	ref_27_negative	28	35	23	33	48	23	44	26	46	16
TAATTAGCGTGCGCTA	ref_27_negative	33	45	33	28	58	23	43	32	43	36
ACTTCCTATCGATCAG	ref_27_negative	1	9	2	1	6	5	5	4	13	2
AAGTGCACCGCGGAAA	ref_27_negative	2	11	5	11	11	12	13	9	11	5
TCGCTCAAGGGGCGTA	ref_27_negative	9	21	18	11	33	10	33	10	20	12
CTGAGTATTTAACGGT	ref_27_negative	59	78	72	58	99	57	97	48	111	61
CAGAATGCATTAGCCT	ref_27_negative	38	47	40	33	57	35	64	28	45	22
CTCTTAGATTGATTTC	ref_27_negative	16	18	23	15	27	15	26	21	29	17
AAAAATTTCGTCAATT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
AGGTGAATACGGTTAT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GTCCGACCGGCCAACT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TATTACGTTCAGTGTC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
ATTTTTTTTACTGTTA	ref_27_negative	76	160	111	93	128	91	125	73	146	70
CTTGGCGCCCGGCCTC	ref_27_negative	46	56	46	44	54	43	51	28	70	24
TACTCTCGGGTTTGCG	ref_27_negative	3	6	9	2	5	2	5	6	7	1
CCGCCCTGTTTGGGTG	ref_27_negative	7	4	7	4	9	7	8	9	14	4
ATCTGCCGGGCCAAAC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GGTCTCTTTATCCCAG	ref_27_negative	9	23	13	8	17	12	19	12	19	7
TCGGTTTTTCAGCATA	ref_27_negative	3	3	16	3	3	6	6	6	16	4
TAGGGGTGTGATTCAT	ref_27_negative	11	16	12	12	21	11	30	6	19	17
TCCAGCGCCCTCGTTT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CCCCGCTTGCAGAGAA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GAACTTTTTGGTGGTA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TCCATATTTCCTGGCA	ref_27_negative	19	22	19	11	14	9	25	11	24	14
TCTCGGGTTATTCACC	ref_27_negative	5	13	9	2	15	5	10	3	3	5
CTATCAGGCATGTCCC	ref_27_negative	15	36	29	19	26	18	44	16	36	15
TTAACGTGTCATAATA	ref_27_negative	9	5	10	11	6	5	8	3	6	7
CAAATTGCCTGAGGTA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TGTTAGTGTGTTATCT	ref_27_negative	54	81	56	42	67	45	95	40	80	42
GGTATTTGCGCACCGT	ref_27_negative	9	14	16	12	18	10	9	7	22	10
TAGCTGGCGTAACGTC	ref_27_negative	7	13	13	9	22	8	23	8	23	12
AACTGTTTCGTTCGTA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GTACACACTGGCCTGT	ref_27_negative	3	16	11	9	21	5	20	6	16	10
CTTCGGCAAGTTACCG	ref_27_negative	13	18	11	10	12	13	15	8	11	16
GCACCTGGCCCGTCTA	ref_27_negative	12	16	11	9	21	20	25	12	17	12
TCAGTAATGACAGTGC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TTGCACCCAATGATTG	ref_27_negative	33	45	37	29	43	27	58	22	53	40
TCCAATGGCTGCTGTA	ref_27_negative	29	32	15	20	47	19	43	19	37	15
TCAAATCCGACTCTGT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GCTGGCGTTCTTGTTT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TTAAACGTCGTTTATT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
ACTTGTAGTAGTGGGT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GTCCATTTAGGTTACA	ref_27_negative	3	9	5	8	18	3	14	9	23	6
AGCTCGCCAGACCGTC	ref_27_negative	57	81	72	57	78	72	109	42	84	58
AGGGCTTTCGGTATCA	ref_27_negative	21	18	7	11	28	21	18	16	29	11
AATATATGGCTTACAT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CACATTTTACTTTGGA	ref_27_negative	15	14	9	11	20	20	24	13	12	10
TTATATTGACATGCGT	ref_27_negative	10	37	18	19	44	24	21	27	24	14
CTGAATTATGGTTGAC	ref_27_negative	0	1	2	0	1	0	0	0	2	0
CCAGCATCTATCGCGC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
ATTCTCTTTACGGGTT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GGTTAGCAATCCTATG	ref_27_negative	46	53	44	45	70	34	94	31	67	42
AGCTAGGCGTGCTGTC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CAGCCGTGGGACATGG	ref_27_negative	21	49	22	24	43	19	31	15	47	14
TACTTTTACAGGTATG	ref_27_negative	9	16	8	10	20	6	28	8	19	12
TGGCCCAGTGACCGGC	ref_27_negative	12	19	13	19	22	15	14	15	22	17
GAGTCAGTATTATCTC	ref_27_negative	13	14	10	11	15	12	13	10	12	8
CTCAAACCGTAATGGA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TACGTACCTCCGCGTG	ref_27_negative	0	0	0	0	0	0	0	0	0	0
GTTGGGTGCGGATACC	ref_27_negative	27	31	17	17	21	20	27	11	33	22
TGGTGCGTTCCCGCAT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
AGTCAGCTAGTGATTT	ref_27_negative	61	95	59	57	91	61	84	38	69	42
AAATGTCTCGATGTTT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CTGATATTGAAAATTT	ref_27_negative	35	43	39	45	61	30	70	46	60	30
CATGACAGCCATACAC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TTCTTAGGCTCTCCTT	ref_27_negative	10	12	25	6	11	10	26	15	14	12
ATGTTGGCATGTTCAT	ref_27_negative	16	20	9	11	15	12	12	15	19	11
AGTACTCGGTCCTTGA	ref_27_negative	0	0	0	0	0	0	0	0	0	0
TACACAGTACCTGACA	ref_27_negative	28	44	29	25	49	19	52	36	58	19
GTACGTACCTCGATTC	ref_27_negative	5	24	3	6	33	6	32	5	23	3
GTATTCCTGCTGTATT	ref_27_negative	0	1	2	4	1	0	3	1	1	0
AGCTGCGTTACGATTG	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CATGGGAAGCCCTTTT	ref_27_negative	17	41	27	18	30	30	35	32	37	30
GAACGTCCAGTTAAGC	ref_27_negative	0	0	0	0	0	0	0	0	0	0
AACTGACTGTGCATCT	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CCCACGTCAGTAATCG	ref_27_negative	0	0	0	0	0	0	0	0	0	0
CGACCTATGTATACGG	ref_27_negative	16	46	30	10	38	19	43	19	38	18
GATACTATGCTTTTTT	ref_27_negative	9	15	9	14	17	10	19	11	19	15
TGAGACCTAGAATCCG	ref_27_negative	2	3	5	2	9	4	6	4	4	3
TCTCAATCTGCTTTAA	ref_27_negative	47	73	53	32	68	35	64	39	78	26
AGTGCTATAAGGCACC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCTATCCCGAGGG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TAATTTTCGTTCCGTC	alt_2534_fdr	949	567	1190	893	508	935	510	845	582	786
CAGGTTAGGGCAAGCC	alt_2534_fdr	113	62	151	95	66	116	70	107	66	93
TTGCACGAATCTCAAC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CAGCACGACGTTCTCG	alt_2534_fdr	81	85	124	92	88	74	86	77	75	70
TATTGACACTTGAGGT	alt_2534_fdr	17	11	25	10	10	24	13	12	22	21
TATCTCATCCTTACAC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
AGCCTTCTGCGGCCTC	alt_2534_fdr	6	5	3	4	5	5	7	4	9	3
AGATTCATCTGGGTCC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCGTATGGCAAGC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GTAGATCCACCATTAC	alt_2534_fdr	3	1	6	6	4	2	2	8	2	3
TTTCTATCAAAAGGTA	alt_2534_fdr	15	17	34	20	19	17	20	31	35	20
TATCAGACTCAACAGG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CAGAAGAAAGAATTTA	alt_2534_fdr	31	7	22	22	16	26	22	25	20	22
GAATCCGCAGCTGCAT	alt_2534_fdr	32	38	75	43	18	48	27	49	34	43
GAGTGATGGGGCATCT	ref_2534_fdr	8	10	23	4	10	12	14	13	2	11
AAGAACCACTCTTGTC	alt_2534_fdr	69	48	63	63	34	41	33	55	41	62
CGTTTTTTCCCGGTAG	alt_2534_fdr	18	9	22	29	20	22	13	16	5	16
TGATTCAAATTACGTC	alt_2534_fdr	41	14	53	46	30	33	18	39	17	35
ATACATTATTTCGGAA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTACTCTTATCCC	alt_2534_fdr	4	17	4	11	14	4	13	1	12	5
ATTCGTCGTCGGCTGA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGGTCACCGCAGC	alt_2534_fdr	108	53	105	88	69	90	64	93	55	77
ACACGATATCTCCGTT	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GGGCGGCCACGGAGTT	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TCATGTGCTAGGTCTT	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCCCGAGATGGTG	alt_2534_fdr	500	363	564	482	359	453	375	492	389	423
TACATTCTTGGGGGGC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTCCCTGTCTTTT	alt_2534_fdr	85	49	111	73	41	82	51	46	68	74
AACTCACGTGAGGGAA	alt_2534_fdr	53	24	56	42	31	42	33	51	39	49
CGTAGACGGATACATC	alt_2534_fdr	175	107	264	195	136	170	116	200	102	177
AGCGTCAAGCATCGCA	alt_2534_fdr	155	94	182	117	94	160	86	142	82	133
TTCGTGTCCTGCAAAC	alt_2534_fdr	169	101	216	180	82	183	136	158	102	163
AATGTTTCAATGAGTG	alt_2534_fdr	14	17	28	21	11	31	8	24	21	24
ACTAGCATTCTTTTAA	alt_2534_fdr	50	33	61	46	26	41	36	40	34	44
AGGACAGTTTACTATT	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCGCTGAGGTACA	alt_2534_fdr	53	44	56	56	35	56	37	53	39	53
GGCGTGAGCTGTCTAC	alt_2534_fdr	41	27	56	41	25	42	23	38	25	45
TGGTATACACTGGTTG	ref_2534_fdr	173	155	231	149	166	178	154	172	181	174
GGCGAATTGCCTCCTC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGCTTTCTGGCGG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GAGGAGTGACTAAGAA	alt_2534_fdr	22	13	18	15	15	10	17	13	11	17
TGCGCGGTGTGTATGT	alt_2534_fdr	11	3	10	12	8	8	9	5	18	8
GTACTTCATTGCCGGA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GAACGTCTTGGGTTTT	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTACTTACTGGCT	alt_2534_fdr	16	19	10	12	12	18	12	9	19	9
CACAGTATTTAGCTTT	alt_2534_fdr	79	34	87	58	38	66	55	52	57	68
GGCTCAACTTGTTTGC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGAAAGTCAGAAG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CATCGTGCCAAGTGTG	alt_2534_fdr	63	44	85	49	50	61	61	58	61	55
CGTCCTGTCTACCTTT	alt_2534_fdr	123	56	116	90	57	102	36	82	63	69
TCCGCACTGGGGCGTA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GACCCTATGGTCCGGC	alt_2534_fdr	39	12	37	45	29	21	15	30	22	26
TGTCTCGCTAGAACTC	alt_2534_fdr	48	17	50	34	28	37	19	33	40	50
CGTGCGGGTCGATATG	alt_2534_fdr	103	54	76	56	56	65	48	58	66	56
TGGGACTGAATGGGTT	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTTCCTCCTTCCG	alt_2534_fdr	126	80	117	102	63	101	66	103	86	98
TGTAGATTTGCTGCAA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCCTAGAAATTG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCGCCGCAGGCTG	alt_2534_fdr	46	25	36	49	34	46	36	51	31	49
AGCCGCTCAGATATCG	alt_2534_fdr	161	137	217	162	151	140	123	183	168	160
TGAATGTATGTGGGGC	alt_2534_fdr	130	58	149	102	66	122	77	87	68	73
GCTATAATGACTAAAG	ref_2534_fdr	67	65	101	62	49	68	62	56	66	59
CTGGCCGTGCACCACG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TACTTATGGTGTGATG	alt_2534_fdr	30	16	22	19	10	13	11	20	16	13
TACCTCACTTCGTTGG	alt_2534_fdr	23	24	16	13	35	19	43	19	27	15
CGTAGGGGTCGTAGGA	alt_2534_fdr	68	32	75	59	31	59	38	64	31	49
TCTATGAGTGGGGGTG	alt_2534_fdr	131	66	154	130	56	169	62	109	119	143
GGCCCGTCCAATGTTA	alt_2534_fdr	166	81	166	108	110	140	109	129	147	131
TTATCGCTGCCAGTTT	alt_2534_fdr	368	218	356	296	169	311	213	224	217	257
GAAATCCGGTGCTGTT	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGCACGGATTGTA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TGTTACGAAAGTTAGG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCCGTGGGTCTAG	alt_2534_fdr	21	13	26	11	11	23	15	11	22	8
ATCTGTGCTTCCGCGT	alt_2534_fdr	24	14	18	26	23	30	20	20	17	16
AATGGGGCAAATGTTG	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
AAAGGTCTTTCCCAAC	alt_2534_fdr	66	64	105	89	43	82	65	57	71	67
CGCGACGTGTGTGCCC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
ATGCAGTTGTTATCGG	alt_2534_fdr	9	7	7	16	2	9	5	11	7	5
TATCCCGCTGCGGTCC	alt_2534_fdr	26	14	21	24	23	14	11	24	11	15
GCCGGGTACCGACTTA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TGCATGCCTGAAAAAT	alt_2534_fdr	29	24	37	29	38	33	19	21	24	25
CTGACAAGTTGCCTGC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TTCTACTGGACCTGCC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCCGGGACCAGGA	alt_2534_fdr	39	21	49	50	19	41	19	27	14	29
AACGCTAGTGTGTCCG	alt_2534_fdr	58	21	67	35	30	50	26	43	28	25
CTAGCTCCTCTCGTGC	alt_2534_fdr	49	70	61	58	52	49	41	56	60	38
TAGCCGGCCTTCGCAG	alt_2534_fdr	22	21	34	27	14	25	11	18	15	19
CCGGGATTGGGATAAG	ref_2534_fdr	82	88	113	91	81	71	88	97	95	78
GAGATTCCAGCCGTTG	alt_2534_fdr	97	96	162	130	99	103	92	139	100	99
CATCTTCCATACACTG	alt_2534_fdr	90	53	147	93	60	100	46	78	48	76
CCTAAAAGCTAGTTTC	alt_2534_fdr	15	33	19	40	29	23	28	20	27	18
CTGCCCAGAGTTTCAG	alt_2534_fdr	295	173	323	247	164	310	190	273	173	269
AGTCAATCACTTGACA	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CGTGGTTCAATTTACG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTACATCCTTCG	alt_2534_fdr	70	45	74	68	32	48	50	76	52	59
CACCTACTCTGGAAAC	alt_2534_fdr	4	3	8	5	6	6	3	3	5	2
AAGTGCTCCTCGTTTG	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCACTAATCTTCC	alt_2534_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGACTCCTTTGAG	alt_2534_fdr	21	7	23	15	16	12	10	13	14	10
ACAACTAATGCGGCCT	alt_2534_fdr	85	46	121	88	39	88	70	92	58	89
TCTAATGGCAGTTCGG	alt_2534_fdr	191	121	221	200	128	172	91	188	127	178
TTTTTCGCTCTGGACA	alt_2078_upstream	3	3	4	8	3	7	4	6	3	4
GGCGGGTCGGGTAAAT	alt_2078_upstream	108	79	115	120	64	100	80	90	64	103
GGCGCGCAATCTACTT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTCCTTCATTAAC	alt_2078_upstream	98	81	100	96	100	101	100	76	106	88
CGCTGGCATCATTGTG	alt_2078_upstream	93	93	140	105	82	103	76	116	94	120
GAGCCGCATCCGCAGA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
AACAAGCTGTTTGGCA	alt_2078_upstream	110	96	118	118	72	88	95	113	91	79
TGATTGATGGTGGAAC	alt_2078_upstream	95	65	98	103	74	106	81	81	72	90
TGTCTCATTAAGTTAA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGAGTTACCCATG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GCTTATCGTTAGATTA	alt_2078_upstream	5	6	2	6	2	7	1	6	4	8
ACGATCAGTGGACTTA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGCGTTTTGTATG	alt_2078_upstream	54	56	85	51	60	49	66	60	56	50
TTCAATGTTCGGACCC	alt_2078_upstream	67	48	58	59	33	78	63	34	68	42
ATCACGTTTCGGACGA	alt_2078_upstream	41	22	51	38	32	29	29	44	31	41
GTAGTTATATATTTCA	alt_2078_upstream	16	13	13	22	19	13	17	20	9	18
TTGGCATAAAATCTGT	alt_2078_upstream	38	25	52	30	30	39	21	42	28	26
CACATGTCTCTTCAGC	alt_2078_upstream	30	11	32	25	17	24	11	31	23	35
TTATTTGACTTCGTGT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGGGTTTGCTAAG	alt_2078_upstream	495	345	651	588	363	494	405	465	409	453
CGATTACTACTGGGAA	alt_2078_upstream	244	180	281	226	169	209	154	212	140	185
GCCTCTCTACAGAGTT	alt_2078_upstream	11	15	15	18	17	17	11	18	8	13
GATTTTCTTGCAAGAT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TATCATTCACTGATGC	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGACTTAGTACC	alt_2078_upstream	8	11	9	7	5	4	9	10	7	8
TTGTTCCGGAAGACTG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTATGAGGCACGTATT	alt_2078_upstream	169	141	213	139	133	119	126	160	131	139
GTAATAACAGATAGAC	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGTAGCCTTAGAC	ref_2078_upstream	38	24	40	30	18	26	21	21	17	15
CCTCGAGCCATTGCTT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GCTTAACACGTGGTAT	alt_2078_upstream	398	281	488	431	264	443	266	423	331	356
ATATGGGTTTGTTATT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
AACAGTAATTGCTGCA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCATGGTCTTGGA	alt_2078_upstream	1	1	1	1	2	1	2	1	1	3
TTGTCTGGTCGATGAT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGGAGGGTCTGA	alt_2078_upstream	20	14	36	27	14	30	12	32	18	21
GGATTTCGGTACGCTG	alt_2078_upstream	125	63	131	111	72	93	72	99	92	93
GTAACTTGTTTGACGT	alt_2078_upstream	69	58	74	90	63	77	77	60	86	67
CCGCTACACCTTCAAC	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGGGTAGACCCAA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTGGTACTCGGTC	alt_2078_upstream	32	14	38	42	22	31	27	30	28	20
GACCTGCTGGATAATT	alt_2078_upstream	114	100	125	139	79	108	74	116	83	126
TTGATGGAGGCTGGGG	alt_2078_upstream	42	19	44	34	26	49	22	29	30	29
ACATCTATGTCAACGC	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGCCTCATCAGCT	alt_2078_upstream	54	52	70	67	63	55	47	71	45	49
AAATGTTTTAATCCTA	alt_2078_upstream	5	4	10	6	3	4	10	7	6	7
CCTTCTATGCATATCA	alt_2078_upstream	29	21	39	25	19	40	34	38	21	19
GCACACGCATGTATTA	alt_2078_upstream	52	41	73	54	58	38	52	54	45	51
TTGCGCTCGTGTAAAT	alt_2078_upstream	2	4	3	4	9	2	5	9	5	2
GCCCTCGCTCGCGACC	ref_2078_upstream	31	55	38	45	52	47	49	30	50	45
GAAGAGTATCGTACCT	alt_2078_upstream	22	19	33	22	19	33	22	25	23	19
CCGACGGAGGACTACT	alt_2078_upstream	22	12	28	18	17	15	15	26	20	23
CGCGAATTACCGCGTG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
AATCCCGTTAGGGAGC	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GACCATCGTGGTACTG	alt_2078_upstream	18	16	30	16	19	26	35	24	17	22
ACCACCCTAGTTCCTG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TGTTACTAGCTCTCAC	alt_2078_upstream	64	53	71	72	58	50	62	49	92	39
TAGGTCACCGCGTCTT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GCAGGCATCCTTATCA	alt_2078_upstream	19	20	32	17	24	12	14	30	17	19
AGCATGGCTAGACAGA	alt_2078_upstream	14	10	16	16	17	15	9	10	10	21
GAGAGTTGCATGTAGG	alt_2078_upstream	53	33	40	37	23	36	23	26	22	37
AGCAATTAAGCCTCTA	alt_2078_upstream	47	18	51	34	26	40	33	30	28	28
TTTATGGCATGCACCG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
AAGCCTGGACGCCGGG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGTTTGGCTTTCA	alt_2078_upstream	4	1	3	4	2	3	1	1	1	3
GCACAATAGCACTATG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTCCCGGGCCGTA	alt_2078_upstream	8	12	17	11	13	13	11	7	15	7
CCTCTTGGTCAGATTG	alt_2078_upstream	55	47	73	65	33	60	38	36	39	44
TCTTAGTTCAGTACTA	alt_2078_upstream	34	31	43	27	36	39	23	21	29	32
TTACCCATCTTCTTGG	alt_2078_upstream	2	17	4	3	39	2	21	3	26	2
GTCTTATGGGCGCAGG	alt_2078_upstream	59	52	59	45	36	37	34	54	44	46
TTTGTTCCCCGGTGAA	alt_2078_upstream	8	14	27	15	25	11	14	16	16	21
TACTCAGTCTTCCATT	alt_2078_upstream	2	2	4	1	0	1	3	0	1	1
CTAGGGGTGGGTCTGT	alt_2078_upstream	5	2	10	4	4	5	4	4	6	12
AATGTGCTCGGCATAC	alt_2078_upstream	26	23	27	24	22	23	19	23	18	15
GACGGCGCTTGTTACA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGATCGAAGCGCT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTCCATATGTAAG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCGTACATAGTCG	alt_2078_upstream	29	14	30	35	19	29	26	37	23	39
TGCTTCCAGTCGCAGT	alt_2078_upstream	73	48	104	112	51	72	61	84	72	88
CATAGACCGCGAGACG	alt_2078_upstream	216	167	256	212	157	200	196	205	183	169
GGCAAGATGATCATGC	alt_2078_upstream	105	102	137	128	98	123	117	114	106	123
TGATGGGGACTTTGGC	alt_2078_upstream	9	3	17	13	4	8	8	8	6	6
ATTACACGTTATATGG	alt_2078_upstream	17	20	20	21	17	26	11	19	16	16
TTGTAGTTATGGCTTC	alt_2078_upstream	13	6	15	9	6	11	7	10	9	6
CTTGGTGGCTCCGTCA	alt_2078_upstream	18	18	51	20	18	19	29	20	15	27
TTATTCTCTTTTGTGA	alt_2078_upstream	15	12	15	14	3	10	9	14	5	12
ACTATTTAATTAATTT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GGCAATCTTTTAGGGA	alt_2078_upstream	4	5	10	10	0	4	3	3	0	3
CATCGCCGCCAAACAC	alt_2078_upstream	29	24	37	27	17	37	23	36	25	21
AGGCTATGAGTCGGTT	alt_2078_upstream	145	87	156	115	88	116	106	113	109	113
AAAATCTATTAATGCA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
AAGACAGCTTTTCGCG	alt_2078_upstream	48	36	37	37	34	40	26	41	28	41
CCTGTTATGCCTATTG	alt_2078_upstream	24	20	22	28	21	21	12	29	20	14
CCGCCTCCTAGCAACA	alt_2078_upstream	33	25	29	30	30	34	29	27	31	33
CGACTTTCTGGTCCAT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
ACCTACGTGTAAGCAT	alt_2078_upstream	61	42	81	48	54	61	57	53	48	48
CATTAGTAGTGCTTTG	alt_2078_upstream	23	18	23	31	18	25	28	34	22	22
TACGACACTATACCAG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTATGTTTGCTCCTCG	alt_2078_upstream	2	2	2	8	4	0	6	6	1	0
CTCTAGTTGTGCTCCG	alt_2078_upstream	41	37	57	59	56	35	61	56	51	45
CAAGTTTTAATATCGC	alt_2078_upstream	4	2	0	1	1	2	0	3	0	5
CGAGCGCTTTCTGTCA	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCCTGTGTGTTAA	alt_2078_upstream	28	25	32	29	20	32	24	26	26	19
CCTTCACTTTTGCATG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTCTAGGGCATG	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGTAAGATAGATC	alt_2078_upstream	40	20	43	43	41	40	31	31	26	41
ACTTTACTCAACCGGA	alt_2078_upstream	33	23	58	35	26	43	31	44	37	23
AAACTTTTCCGTCTCT	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCGGTGAATCGC	alt_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTTGTAATCTGG	ref_3829_fdr	49	40	28	28	33	31	33	24	22	28
CCACCATTTTCCAGTG	ref_3829_fdr	5	14	2	3	20	5	15	1	19	2
TTTATATAGACTTGCA	ref_3829_fdr	72	44	74	74	60	50	61	73	71	71
GAGTCTACATTCGTTA	ref_3829_fdr	109	125	138	106	121	97	112	118	118	88
GTGTCCAATACGCAGC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTAGTTTTCTAT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGTGTGTTCTAAC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTCACGACTTGGT	ref_3829_fdr	91	119	107	99	104	99	115	92	112	81
AGCCTTTACGTACAGA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTGAATCTGCATG	ref_3829_fdr	13	15	25	11	17	18	21	16	18	19
TCATTGGATCTGGAAC	ref_3829_fdr	113	107	144	104	104	108	111	103	134	104
GGGCTACGCCCTTATC	ref_3829_fdr	370	361	463	351	387	311	363	402	354	351
AGCCCTCAATGGATGG	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGCAATAAGTGCG	ref_3829_fdr	61	55	78	49	47	44	60	46	62	49
CCCACAACCATTACCA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TACGGAAGCTGACCAG	ref_3829_fdr	62	45	65	65	30	68	42	55	39	42
TGTATAACATTGCCCC	ref_3829_fdr	3	6	10	3	4	4	4	2	5	2
CGGCGCTGACTATCCT	ref_3829_fdr	63	59	82	66	67	64	77	79	95	59
CCATTTTTGTGGGTTC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCTTCATCATCTT	ref_3829_fdr	3	4	9	2	7	7	1	7	3	6
ATCCACCTTGATTTGT	ref_3829_fdr	31	50	38	33	43	20	37	38	38	24
TGCCCGCCACCTACGA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTGTTGGTTTTTA	ref_3829_fdr	26	19	29	30	35	29	26	30	40	17
TGTTGGTAGTAGTGTC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GCTTGGCAGTTTCAGT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTATCTGGTAGTT	ref_3829_fdr	13	14	7	14	12	9	17	20	12	10
GTAGCGGACGCATTCT	ref_3829_fdr	13	18	17	18	14	12	26	17	23	13
CGATCACGAGTCTTTG	ref_3829_fdr	54	47	59	58	74	32	54	45	56	37
TTCCGACTCCTTAAGA	ref_3829_fdr	83	106	98	102	86	90	93	79	98	71
CCCGACTTGTAGCAGC	ref_3829_fdr	83	127	110	99	91	105	127	70	141	63
GCCGCACGCGGTGACC	ref_3829_fdr	30	34	38	29	34	29	40	23	22	31
TATCTTAGGCGATCAC	ref_3829_fdr	9	8	21	10	6	12	19	12	11	16
ATGGACTTTGTAGACC	ref_3829_fdr	57	49	83	56	62	62	58	66	70	68
TACCAGGGTCCCCTAT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TCCTAGATTAGCGCTG	ref_3829_fdr	90	99	125	108	118	101	117	107	108	78
TGATTTATGCTGAGTC	ref_3829_fdr	42	38	46	50	45	44	35	38	52	38
CCAGTATGTGGTTAAG	ref_3829_fdr	3	20	2	0	14	5	20	2	18	3
CAGGTACGGTCGTTAA	ref_3829_fdr	309	284	383	387	333	251	303	300	311	308
TGCATTCTCATCGGAC	ref_3829_fdr	32	32	57	32	41	19	49	39	32	26
TTTATTTCTTGATTAA	ref_3829_fdr	18	5	14	12	8	15	25	17	12	15
TACGTACTGTGATCCG	ref_3829_fdr	24	18	27	23	33	17	30	30	28	18
GGCAAACTAGCTATAA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
CGCACACAGGTATCAC	ref_3829_fdr	15	24	19	24	13	17	17	20	24	11
TATACGATTGGCCCTG	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GCGATGTCCTGAAGAC	ref_3829_fdr	80	63	61	72	65	62	49	63	77	64
GTTCGTGGATTCACTG	ref_3829_fdr	23	24	47	32	25	24	18	24	34	35
AGCCACTCAGCGACAC	ref_3829_fdr	23	25	30	28	31	14	28	14	39	18
TGTCCCTAGTTCTGTG	ref_3829_fdr	179	207	205	195	260	162	216	155	231	159
GAACCCTCAACCGTCA	ref_3829_fdr	54	35	41	37	41	30	43	28	33	27
ATGAAGGTACCGTGGT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TGTCATAGTTTCTTGT	ref_3829_fdr	110	115	164	126	85	82	107	105	116	105
TAGTTGGTTACGTCGC	ref_3829_fdr	19	18	30	35	19	25	12	22	20	22
TCCTTAGTTTTTGGTC	ref_3829_fdr	17	15	13	16	28	23	16	18	23	18
CGAAGGTAACATACCT	ref_3829_fdr	40	64	58	52	42	44	83	37	67	32
GTGTGTCATAGACGGT	ref_3829_fdr	22	28	38	37	31	28	43	22	29	20
TCCAAACTTTTGCCTT	ref_3829_fdr	7	6	5	9	5	13	9	10	9	8
CAGGCAGGGATCATAT	ref_3829_fdr	185	169	246	212	181	177	177	177	208	163
GCCCAAAGATTTAGGA	ref_3829_fdr	49	72	73	55	42	47	54	56	47	56
GAATCCTTTGTTTGGC	ref_3829_fdr	32	32	47	27	47	38	35	27	40	27
TATTCTTTTTCACGCC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTTCGGAAAGTGA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTCAAGCTACGGATGT	ref_3829_fdr	8	5	9	13	6	10	11	6	14	12
TGCTGGTCACGCATTA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GCGAAGACTTTTTACA	ref_3829_fdr	31	19	41	36	31	35	41	41	23	34
TTGTTTTCTTCAGGAC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGACCGGGGCTC	ref_3829_fdr	64	112	110	93	102	71	114	66	123	85
CGTTGGCATAACAGAG	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TATGGCGCCCTTTGCG	ref_3829_fdr	56	67	81	63	43	59	62	53	72	50
CGCCGAAGGTTTATAC	ref_3829_fdr	30	31	35	29	34	25	41	38	43	31
TGAGTTCGTTATAGGA	ref_3829_fdr	14	19	25	35	16	24	21	4	22	21
TAATGGTTATATTTCT	ref_3829_fdr	33	13	48	37	22	42	43	49	27	27
CCATCAGTTCACGGTT	ref_3829_fdr	0	0	0	0	0	1	1	0	0	0
TTGGTGGTCAACCAGA	ref_3829_fdr	33	32	37	30	41	31	47	34	37	30
CGATGTTCCGTTTCCT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCCCAGAATGTTC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTAAAAGGACATG	ref_3829_fdr	72	63	84	89	77	66	76	73	61	81
GCACGAAACTCTTCTT	ref_3829_fdr	66	67	74	80	66	66	72	71	72	67
TTGATTTGTAATGAGA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GATGTGTTTTCCTACT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TTGACCGACTCTACGC	ref_3829_fdr	132	122	168	156	118	125	126	135	116	118
CGTTAGCATAACAGAG	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCCTATTCGCTCT	ref_3829_fdr	62	55	52	55	57	43	64	53	60	47
GCTTGCTGCGACGATC	ref_3829_fdr	19	14	24	19	16	19	14	21	19	11
TTCTGCCAAGAGTATC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GATTGGTCTGCTAGTA	ref_3829_fdr	63	87	112	66	86	72	68	78	109	63
ATTCTCACGACTTGGT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTGTTATAGCCAA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCGGGGTCATCGA	ref_3829_fdr	3	12	10	12	12	6	4	10	5	4
CGGAATGTCATCGGAC	ref_3829_fdr	6	14	5	5	8	6	5	11	4	2
CTGAGTCGACCCATAT	ref_3829_fdr	76	79	70	70	62	74	80	86	79	73
CAGCGCCTGTTGTAGC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTTGGTAAGGTG	ref_3829_fdr	31	32	49	35	31	38	39	34	36	23
ATGTGAATTATGCGAC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
CGAACGTTTCGCCTGG	ref_3829_fdr	80	67	101	86	78	65	70	73	75	77
AAGCGGGTAGTACACA	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCTTAGCCCCCAG	ref_3829_fdr	30	43	26	42	35	40	46	29	28	32
TGCTGTTAAGATCTAG	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTATTGGCGGATT	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTGCAACCCGGGC	ref_3829_fdr	4	7	7	2	1	2	8	4	4	5
CGTTAAAGTGTTTTCT	ref_3829_fdr	54	37	86	61	55	68	49	56	56	62
TCCGACGTGTCGGGTC	ref_3829_fdr	8	9	11	12	12	5	7	7	4	7
TCCTATATGCTTGAAC	ref_3829_fdr	80	58	78	96	80	66	94	57	58	57
ACAACGCATTGATCGA	ref_3829_fdr	59	46	84	56	46	53	50	62	59	36
GGTCCCTCTCACTGTG	ref_3829_fdr	27	83	27	29	66	18	90	17	90	17
TCGAACGTTTCTTTAC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTGCCAGCATGTC	ref_3829_fdr	7	18	16	13	14	9	12	8	12	9
TTGTCAATTGTATGCC	ref_3829_fdr	51	39	67	53	30	52	45	49	50	46
GTTCCAGAACTCACTG	ref_3829_fdr	131	159	173	120	146	105	131	133	145	133
AGATACCTCCTTCATC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCAGTATTTACTC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAGCGCGTAGTGG	ref_3829_fdr	13	17	22	11	6	16	9	12	15	20
TGTTTTTCGGCGGTCC	ref_3829_fdr	0	0	0	0	0	0	0	0	0	0
TAGATATACTCGTTGC	ref_3829_fdr	12	11	17	23	13	15	17	30	19	15
AAAGCATCAAATACGT	ref_3829_fdr	11	21	16	15	10	15	15	9	15	10
GTGTCCGCATCTTTAG	alt_3388_RC	77	115	94	81	121	97	124	70	85	77
TAGACCTTTTTCACAC	alt_3388_RC	3	1	4	2	0	1	2	3	0	1
TCTCTTATTAGGGTCC	alt_3388_RC	16	11	33	15	31	14	18	14	19	14
TCGGACACTTGTCGCT	alt_3388_RC	61	93	73	80	87	73	88	62	87	61
TTAGTCGCCGTGAGGT	alt_3388_RC	51	41	36	46	45	28	45	29	64	31
CTTCCCACAAGCTCAT	alt_3388_RC	39	42	42	39	45	40	39	31	39	30
ACATGAGACTGAAATT	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
GTATCTCCTGCCCCCC	alt_3388_RC	27	25	17	30	29	24	29	30	34	26
CTGCCCCATCTTCCTA	alt_3388_RC	37	108	65	53	115	52	117	47	113	50
TGGTTCCCCGCCCAAA	alt_3388_RC	30	31	31	36	26	21	40	21	41	22
TTTACCTTTCTTCCAA	alt_3388_RC	255	323	321	251	376	244	313	237	399	222
GTACTCGGGTTGGTTT	alt_3388_RC	20	31	28	19	20	16	28	16	26	25
TAGTGTTTGAGCGAGG	alt_3388_RC	24	25	17	18	22	13	24	24	22	27
GTGATATTCGGGTCTT	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
CCCAGCGGTGTTCAAT	alt_3388_RC	27	15	16	25	18	20	23	19	20	17
AAGTTTGATTTCGTCT	alt_3388_RC	13	8	14	10	11	10	18	13	8	7
TCTAATAACATTGACA	alt_3388_RC	13	5	17	3	13	13	13	4	8	14
GCCATTCGGATCGCAT	alt_3388_RC	39	41	37	37	47	47	39	27	33	24
TGAAAGCCGACCCGGA	alt_3388_RC	1	1	1	3	0	2	2	0	0	1
TTCGACTCGGGCCTTG	ref_3388_RC	405	431	474	366	423	356	429	367	424	345
GTATTAGGTCAAAGCC	alt_3388_RC	31	38	27	31	30	33	30	25	33	23
TCCTGTAGTTAATCTG	alt_3388_RC	71	78	93	74	84	83	93	59	85	56
GTATCTACTTGGTTCA	alt_3388_RC	16	15	14	12	19	12	13	11	26	19
TATCTGTTCACGCAAA	alt_3388_RC	4	13	11	10	8	8	7	11	12	5
TTTGAGGCAGCTAACC	alt_3388_RC	137	150	174	142	170	116	176	121	199	110
ACCAGAATTTATTCAG	alt_3388_RC	25	31	31	24	35	20	33	16	40	16
GTAACGGCGTAATTGG	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGTCAGAGGTAC	alt_3388_RC	41	35	37	29	53	22	43	24	55	41
ATGTCGGCCTGACTAG	alt_3388_RC	15	11	11	11	29	10	14	20	15	5
TTTGGACTTCTATAGC	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
TTAGAAGGCTGCGTAC	alt_3388_RC	49	57	41	30	56	40	42	32	61	31
CAGGTCCATATGGCAA	alt_3388_RC	29	28	34	25	31	20	26	28	41	18
TTTTACGTACGATTGG	alt_3388_RC	6	17	9	9	14	4	8	3	5	5
GGTTCAAAATATCTCC	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
TCAGATTGGGCGTTAA	alt_3388_RC	16	17	15	12	17	21	16	12	20	11
TGGCAAGGCACGTCTT	alt_3388_RC	1	5	9	6	8	9	8	3	12	2
AGAGGCTTTATCTTTT	alt_3388_RC	161	150	184	161	167	143	163	153	152	138
TCTTCATAGGGGTCTA	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
GCGTCTTGCAAAATAG	alt_3388_RC	59	57	72	57	65	43	63	55	76	49
GACATCTGCACTGCAA	alt_3388_RC	2	0	1	2	1	4	1	1	0	2
TGCTGGGCTTATTTTT	alt_3388_RC	144	170	190	149	163	145	198	99	196	128
TCAGTAGGTTATTGCA	ref_3388_RC	105	123	142	129	150	86	129	93	137	91
CGGGACATTGAATATA	alt_3388_RC	145	170	155	135	184	99	165	132	182	108
GGCGATAAATCTGGGG	alt_3388_RC	44	44	43	43	47	38	32	36	45	33
TCTAGCCGCGCTAACC	alt_3388_RC	17	19	8	16	29	13	4	5	28	9
GAGCTTTTACCCAGGT	alt_3388_RC	162	208	229	204	221	184	220	155	190	141
TCTTTACGCTGTTTAG	alt_3388_RC	1	3	2	1	2	1	0	3	3	2
AATTGACTCGTCGATC	alt_3388_RC	173	194	235	173	205	192	220	165	253	180
CTCCCAGTTTCTTGGC	alt_3388_RC	0	11	0	0	6	0	3	0	8	0
GTGAATGCTATCTTGG	alt_3388_RC	35	30	51	29	44	28	50	28	41	24
TTGCCGCCAATAAGCT	alt_3388_RC	25	36	35	35	37	35	34	27	38	30
GCCAAACGTCCGGGGT	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
TCTCAGAGAACGGTCA	alt_3388_RC	77	54	64	67	64	51	79	73	63	49
ACTTGCGGGGCCCGCA	alt_3388_RC	117	152	171	123	141	127	168	142	187	124
ACTATCATATCGTTTG	ref_3388_RC	61	64	78	63	54	45	77	57	75	52
GCCGCGTGGTACTTGC	alt_3388_RC	6	68	26	14	76	23	71	14	76	27
AGCCACATGTATTCTT	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
CCGGAGGTGCCAAGTA	alt_3388_RC	19	17	15	17	17	21	24	11	13	17
TGGTTTTGTTGTTGCC	alt_3388_RC	54	61	65	50	66	48	47	59	52	56
TTGCGGGGGTACTTAA	alt_3388_RC	26	47	35	32	25	34	44	25	44	25
GTTTGAGGGGTCTCGT	alt_3388_RC	17	22	16	19	15	18	20	11	25	11
CTATCCATGATCAAAA	alt_3388_RC	46	61	54	48	43	33	40	39	41	43
AAATACTGACGGAGCG	alt_3388_RC	0	4	0	3	1	3	1	1	3	2
TTCGACTCGAGCCTTG	alt_3388_RC	1	0	0	0	0	0	0	0	0	0
TCGCCTTGAAGTTGTA	alt_3388_RC	6	10	9	9	14	9	8	7	11	6
CCTTTGTCCTCATGTG	alt_3388_RC	181	193	188	165	185	162	213	136	218	150
CGCGGCACGTTAGCCC	alt_3388_RC	40	40	34	25	52	30	59	28	50	30
CTGGTATTATAGTTCG	alt_3388_RC	22	28	16	18	23	10	21	22	29	20
CCTACCGTGGGTGCCG	alt_3388_RC	5	4	2	2	5	0	0	1	3	3
ACCGATACAACGGGTC	alt_3388_RC	14	30	14	13	22	18	19	9	23	16
TTGTTTCTAGTGTAAC	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
CTTTGCTTGTGTCCAT	alt_3388_RC	21	28	22	17	30	14	19	18	33	10
GCCGGATTACTTCGCG	alt_3388_RC	77	107	121	68	129	88	92	83	122	70
CTTCCGGCCGAACGTA	alt_3388_RC	3	6	9	5	3	4	8	10	9	3
AGTAACCCTTTTGTAG	alt_3388_RC	8	7	12	7	12	10	8	11	14	6
GTGTGCTTTGCGGGTT	alt_3388_RC	35	43	39	46	34	25	57	35	58	33
GTAACTCGGCTCACTT	alt_3388_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGGAGCGCTATC	alt_3388_RC	15	20	26	16	32	28	36	21	21	22
TGGGGATTTCTCGGAG	alt_3388_RC	12	11	9	14	12	13	17	9	25	13
GTAGCATGTGTGTCAG	alt_3388_RC	43	42	27	28	57	28	46	40	36	34
TGTGTTCGCAATGATG	alt_3388_RC	13	12	8	7	12	22	16	12	16	6
CCGAACGTGCCATTAC	alt_3388_RC	15	27	20	19	28	15	23	17	32	17
GTGCGACTAGAGGTTG	alt_3388_RC	8	14	10	5	9	11	10	15	17	9
TTAGTTTGTCGCTTTG	ref_5884_new	66	109	79	78	113	56	110	61	134	54
CCGGGGAATAACTCCA	ref_5884_new	19	41	25	32	68	18	51	19	48	15
TTTCACTTTAATCTTA	ref_5884_new	8	17	24	15	19	13	17	15	18	11
GCCACGTGTATTGTTC	ref_5884_new	2	10	3	2	14	4	11	3	8	3
TTTATATCTGGTCTAC	ref_5884_new	4	9	3	2	4	2	6	2	3	2
AGCGGTTCGTCCAACA	ref_5884_new	29	55	48	31	54	24	60	23	85	41
TCAATTTTTTGTGTCC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TCATGGTCTCTCTCTT	ref_5884_new	42	60	76	39	72	49	84	45	67	33
GGCAGCAATTCAGCCA	ref_5884_new	6	23	11	14	23	17	23	8	15	9
GGGATGCGTCCATCTC	ref_5884_new	2	7	9	8	15	6	25	7	18	5
AATTCGCGTTGTATCC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
AACCATTATAGGAAGT	ref_5884_new	26	56	40	36	57	30	49	24	58	32
TAGCCTGTACCGAGTG	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TTTATTTGTATAGCAC	ref_5884_new	43	44	33	33	43	41	50	27	53	29
AGTACATGGCCTGAGC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TAGGCGGCCAGGTGCG	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TCAAAGGGGGACTGTT	ref_5884_new	4	1	2	0	7	2	2	0	5	2
ATTCCAGAGACGGAAA	ref_5884_new	7	12	7	9	22	4	15	1	17	5
TAATGTCTGCACATCA	ref_5884_new	28	43	26	30	35	28	28	15	42	20
CTGGCGACGGTCTCAA	ref_5884_new	23	36	32	24	35	31	37	22	33	35
TTCACGCTATAGGCGC	ref_5884_new	0	1	0	0	0	0	2	2	0	1
GCCATGCTTACGCCTG	ref_5884_new	0	0	0	0	0	0	0	0	0	0
GGACGTGATCGGCTCC	ref_5884_new	15	16	12	13	15	8	19	7	21	11
ATGAGAGGTCTGTGCT	ref_5884_new	3	7	10	9	12	6	13	2	14	5
GCCTGCTTGGCGCTCC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TTAGATGTTGAGGTAA	ref_5884_new	2	4	2	4	10	8	5	4	13	3
ACTCGCATGCCACATT	ref_5884_new	3	25	6	5	21	8	20	5	28	2
ATAACTTCAGTGGGTC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
CGTTTTTCGATGACCC	ref_5884_new	2	23	5	2	9	8	8	2	12	12
TGCGGGGTTCGTACGA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
ATTTCTGGATCGGATT	ref_5884_new	28	33	22	17	36	14	29	21	43	17
ACTGTTTAATTGATAT	ref_5884_new	24	30	21	19	24	16	56	17	23	25
TGTCTATACTCGATGG	ref_5884_new	21	51	21	26	51	31	40	37	60	24
CAGCAGGTCTAAGATG	ref_5884_new	19	36	18	11	41	20	35	8	43	9
ATAGAATGGGACGATC	ref_5884_new	28	48	37	24	38	41	58	35	62	29
TGTACCTTCTCCTGAC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
ACTTTGAAGGCTGCTT	ref_5884_new	0	0	0	0	0	0	0	0	0	0
CCTTTTACGCTCTTAA	ref_5884_new	18	42	34	23	42	18	50	15	32	16
ACAGTGTAAGAGGGAG	ref_5884_new	28	32	26	24	29	17	39	23	28	20
TGAGTAATTTCATGTA	ref_5884_new	30	44	34	33	52	44	61	38	42	34
CGGGCCGAAATCACTG	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TTCGCTAGAGTCTACC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
CGCAGCGCGGGCAAAC	ref_5884_new	20	29	22	21	28	15	27	14	24	23
ACTCGATAGTGACTTT	ref_5884_new	75	123	100	57	138	81	115	65	158	59
ACTCCGGGTTAACTAC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
AGTTAGAATAAATCCT	ref_5884_new	11	19	5	7	9	8	16	12	24	5
ATCCGGCACTCTGTCC	ref_5884_new	15	51	22	16	45	13	36	20	46	17
TAGATAGTGTTTAAAA	ref_5884_new	6	7	6	1	2	4	4	3	7	4
GGTTGCAACAGATCCC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TGGTGAGTTACTCAGG	ref_5884_new	50	97	84	58	65	69	92	51	108	48
GCCGTGGTAAGTACTG	ref_5884_new	154	218	198	150	202	147	237	169	221	134
GGACGGATGTCCGCTC	ref_5884_new	1	1	0	0	1	1	0	0	1	1
TCGCAGCACCCTCCGC	ref_5884_new	1	9	4	5	11	3	4	6	10	2
GGTTCCTTCTTTGTGC	ref_5884_new	59	128	83	69	121	59	101	60	109	63
TTTATCGTTTACGAAA	ref_5884_new	0	1	1	0	0	0	2	2	1	0
GTACTAGGCCGCGAGA	ref_5884_new	24	23	27	16	43	36	43	15	37	10
CTAAAACGGCATTTGT	ref_5884_new	69	126	66	64	109	55	106	46	121	42
GTACACTTTCCGCCGG	alt_5884_new	15	45	15	14	65	12	68	17	59	10
CCGTGATTCTTACTCC	ref_5884_new	36	48	21	30	46	17	49	30	68	20
GCCTTGGTACATGGTA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
AGGACTGCCTAAACAG	ref_5884_new	17	19	22	13	29	19	33	21	25	18
CGACGGTCCCGATCGC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TTTACTATAGATCTGA	ref_5884_new	18	19	12	19	19	10	10	9	33	11
ATCCATAGCCCGGTGA	ref_5884_new	28	51	34	22	47	28	50	15	55	24
AATGGGCCATCCTAAC	ref_5884_new	76	106	71	66	156	78	126	93	150	70
CCTTTTCTTTTAGTAT	ref_5884_new	6	31	16	8	23	12	19	11	27	13
TTCAATTTTCATGTTA	ref_5884_new	42	55	56	43	69	30	75	31	53	39
CCACCCCATCTACGAA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TGGTCCGCGCTTGTGG	ref_5884_new	85	133	101	94	143	80	148	87	155	83
ATTCCAAGCCCGCAGC	ref_5884_new	2	9	9	10	11	4	10	5	3	3
AGAACGTGGTAATATC	ref_5884_new	25	22	19	14	34	23	26	16	25	15
CGTAGTGCGAATAGTA	ref_5884_new	44	89	52	48	100	46	105	39	103	49
CGCTGTTTATTCGAAT	ref_5884_new	4	3	5	0	11	5	9	2	9	2
TGACAGATTATTCCGA	ref_5884_new	6	11	2	7	14	6	11	5	13	3
AATACTGGACTATCAT	ref_5884_new	0	0	0	0	0	0	0	0	0	0
GCATGTGAAATACTTG	ref_5884_new	15	47	22	12	30	18	38	19	34	17
AACTTCTCGGGTGTTT	ref_5884_new	0	0	0	0	0	0	0	0	0	0
ACCTTGTGTTCGCTAA	ref_5884_new	5	4	2	10	5	3	5	3	13	8
CCGCAGTTTTCCCGGC	ref_5884_new	60	199	82	64	199	57	206	54	208	47
TGTGCTGTGTCACGAT	ref_5884_new	39	52	32	35	59	22	62	24	57	19
TCTGGTAATCAGGTAT	ref_5884_new	22	25	34	22	33	20	40	22	35	15
TCGGCATTACTAGCTC	ref_5884_new	1	5	3	4	2	4	5	5	7	4
TGTTTAGAAGTGTACC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
ATGATGGCCTATGGTC	ref_5884_new	35	64	48	38	55	31	55	24	72	32
ATTTGCTATTTTGTAG	ref_5884_new	0	7	3	7	5	2	5	4	4	1
GCACAAAGTCTCTCTC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
GCTTTCTTCAAACCAC	ref_5884_new	11	9	10	3	5	1	14	3	10	5
CCAGGGATACATTCTC	ref_5884_new	23	26	29	20	28	12	31	18	23	10
GTGCGCTGTTACCCGT	ref_5884_new	0	0	2	0	0	0	0	0	0	0
TATGCGGTCTGACATA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TTGTCGCGAATGAAAA	ref_5884_new	27	37	29	21	39	22	46	23	31	32
CGGCTTGTTTCATTAA	ref_5884_new	5	17	22	14	20	16	15	6	9	6
GGTCCGGCCAGATTTT	ref_5884_new	33	40	27	25	44	27	34	31	41	29
CGTATCGCGAGGGGGC	ref_5884_new	21	39	29	23	52	19	48	22	44	22
GCGGTACAGATCGCTT	ref_5884_new	34	44	20	21	26	20	44	19	32	15
GCACTCATTACCCGGG	ref_5884_new	22	30	23	17	59	26	19	17	46	22
ACATTCGGTCGTCCTG	ref_5884_new	28	32	47	18	33	27	37	18	38	17
CCTCGATCCATCGGTT	ref_5884_new	3	12	3	6	17	6	6	7	10	9
GACGTCTTAGTTGGTT	ref_5884_new	4	7	4	1	11	5	7	2	7	2
CGCACTACGCTGTAGA	alt_5884_new	9	20	13	10	18	14	21	6	33	13
AAACCCTATACGTGGT	ref_5884_new	7	13	10	6	15	6	9	4	12	4
CGCGTCAATGTGTTAT	ref_5884_new	45	102	53	44	123	53	90	57	120	50
GGCGAGCATATACTTA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TCTCTCACGGGGCTAA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
CATGCGCTAGCGTCAT	ref_5884_new	7	10	7	14	16	6	10	5	15	1
GCCCGTTTGCCGGAAG	ref_5884_new	17	40	23	20	48	18	42	22	48	20
ACATGTCTTAGCGTGT	ref_5884_new	10	22	16	13	27	15	19	18	26	20
ATTGGGTTCGTCCAGA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TATGGGTTTCTATCGC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
CTTTACCATCCATATT	ref_5884_new	0	4	0	0	3	0	3	1	5	2
CCTTGCATCTGTATCC	ref_5884_new	7	33	12	8	19	13	19	9	22	4
GAGTGTTGTGCCCCTT	ref_5884_new	18	25	21	17	30	17	32	22	34	13
AATTCATCTCGAACGT	ref_5884_new	5	13	20	10	8	8	11	6	8	8
CGGGAGCAGTACAATC	ref_5884_new	10	20	8	2	18	8	8	7	7	14
AGTGTGACCATTGGGA	ref_5884_new	15	19	10	12	34	9	33	15	37	6
AGCCATCATCTGTCTC	ref_5884_new	1	1	0	1	0	0	1	1	0	0
GAACGTGTTAGGTCGG	ref_5884_new	7	12	10	1	10	10	17	6	15	5
GCGTTATGTTAGAGTC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TCGAATCCTGAGACCA	ref_5884_new	132	196	119	108	207	118	195	99	199	111
AGTGATCTGTAATCCT	ref_5884_new	0	0	0	0	0	0	0	0	0	0
ACTCATGCGCCACACG	ref_5884_new	17	40	27	19	34	23	36	15	31	28
TCCGCCCTGAAGTAGA	ref_5884_new	4	9	7	7	8	9	7	7	12	7
CTAATCAGGTTGTATT	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TCTATGGACTATCGGT	ref_5884_new	24	39	28	29	49	23	37	27	48	17
GGTACCTATTACAATC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TGCACGCGGATTTTGC	ref_5884_new	14	25	15	13	30	16	24	21	39	7
GATTAAATACAAGCAT	ref_5884_new	10	23	13	10	16	5	19	7	21	18
ATATCGTGAATGGGAG	ref_5884_new	49	85	73	38	79	36	98	43	75	50
TTTCTTCGCTCGACCA	ref_5884_new	19	28	26	17	24	20	31	14	29	19
ATACATGCTCCAATAT	ref_5884_new	49	59	41	37	71	40	66	41	88	22
TGTCCGTGCGGCAACA	ref_5884_new	27	50	35	21	45	23	46	31	53	15
GGCACCGGGGTATAAC	ref_5884_new	0	0	0	0	0	0	0	0	0	0
AGGTCATAATGTGTCG	ref_5884_new	0	0	0	0	0	0	0	0	0	0
AAAAGTTTAAATGCTG	ref_5884_new	6	18	21	2	22	12	11	8	15	7
AAGTATCCGTGCCGCT	ref_5884_new	0	0	0	0	0	0	0	0	0	0
TCCGGCTTGGAATTAA	ref_5884_new	3	7	9	5	7	6	3	4	6	7
CCATCAATTGAACCCA	ref_5884_new	0	0	0	0	0	0	0	0	0	0
GTCCAAGGACTGACCA	ref_5884_new	29	31	26	23	34	16	39	16	37	19
TCTGCTGTCCTCAGTG	ref_5884_new	14	35	26	13	34	16	32	20	30	20
CCGCATTCAGAGGGTG	alt_5884_new	25	39	39	36	52	21	57	27	45	23
TAAATTAGTGCCGTCA	ref_5884_new	16	30	34	13	41	17	43	11	29	27
CTATGCCAGATGATGC	ref_5884_new	4	9	11	4	9	2	10	5	7	4
TGCTAAGCTCTAAAGT	ref_5884_new	0	0	0	0	0	0	0	0	0	0
CTGTAGAGCCATTCGA	ref_5884_new	13	37	20	24	46	25	42	20	49	15
GTCTTGTCGGGTCTGA	ref_5884_new	33	60	43	39	41	36	57	30	44	34
GTAATACGTCCATTGG	ref_5884_new	4	9	0	8	10	4	10	3	10	5
AGTTTTAGTCAGATTG	ref_5884_new	220	470	267	250	454	243	423	207	476	212
ATTCGGCTGGCACTTA	ref_5884_new	32	58	29	39	52	28	61	28	53	27
ACTGCGCTTCGATTTA	ref_5884_new	7	11	3	6	11	3	13	7	10	5
TGTGTGGGCCACTGGC	ref_5884_new	5	9	7	5	7	8	11	4	15	4
ATGGAAACATGAGTAT	ref_5884_new	116	177	133	125	207	92	195	108	194	115
TCTCCCGACCTGTCCA	ref_285_RC	8	9	14	8	9	7	11	5	11	5
TACACCTCCCAACCAA	ref_285_RC	50	54	66	57	68	44	70	47	71	43
AATCCCAAAATTTATT	ref_285_RC	13	5	10	8	7	6	4	5	5	5
CCTGGGCGCTTATCAT	ref_285_RC	15	12	16	14	20	11	16	28	17	18
AGTCCGTGGCTGTATA	ref_285_RC	2	3	0	5	2	4	5	3	3	2
ACGTTTCGGCTACCTC	ref_285_RC	11	12	13	19	8	11	5	9	16	11
ATTACTGTGGTTGGGG	ref_285_RC	43	37	51	53	49	40	65	41	40	43
CGCCTCTAGTATCTCA	ref_285_RC	2	2	5	3	3	4	2	3	2	3
CTGTCTTGCGCTCACT	ref_285_RC	24	24	30	24	16	15	16	14	20	14
CATTCCGCCCATGATG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GGTCAATCTGCTATTA	ref_285_RC	56	49	64	57	61	49	63	47	53	51
GCGACCGAACTGCCAC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GAATGGAGCGGACTTT	ref_285_RC	4	8	3	3	8	5	2	4	3	7
CCTGAACCCTAGGTGT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TTGGGATTGTAACTTG	ref_285_RC	33	27	39	31	23	29	13	18	31	17
AAACTTCATCTGCCCT	ref_285_RC	19	11	35	24	20	16	16	19	21	16
TTCGTTCTATAGGGCT	ref_285_RC	30	21	34	28	29	23	17	25	27	27
ACTCCTATGGCAGGCC	ref_285_RC	3	13	1	2	15	0	6	1	13	3
CGAAATGGTCTCCCGC	ref_285_RC	36	12	29	30	15	28	20	31	17	21
AATTGAAATTTTCCGG	ref_285_RC	8	5	16	6	10	14	12	11	22	6
GTTGTTACTTGTTATG	ref_285_RC	17	17	40	30	25	19	13	20	26	18
AACATTCTTTACTGCG	ref_285_RC	3	6	5	4	2	2	5	7	5	1
CCATATTGCCACGTAA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CCGGGGGTACTCGTCG	ref_285_RC	16	11	26	26	33	17	20	24	26	17
TGATATACTAGCAACC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CTGCAAATGTTTGTCA	ref_285_RC	82	89	88	80	92	92	120	83	118	84
TAAGTCTAGAACAGTT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TGCTTCTTCACAGTTA	ref_285_RC	70	85	115	96	74	73	95	71	114	60
CCCCGCACGGCGTATA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TGTTCTAAAATCATAG	ref_285_RC	16	11	17	15	15	12	12	12	12	7
TTAACTGATATTAGGC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TCCAACCGAAGGGGGC	ref_285_RC	16	40	26	24	37	23	70	21	61	11
TAGCACGCGAAGGTCC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCCCGGGATCTA	ref_285_RC	26	23	22	8	23	24	16	20	23	16
TTCGAACGTTAATCCG	ref_285_RC	63	66	83	71	63	66	48	52	60	47
CCGTCTGCAAAGGTTA	ref_285_RC	66	74	86	52	51	75	67	62	56	48
TCCCTTAGTTCATAGT	ref_285_RC	48	87	51	58	65	44	76	52	89	49
CGCTGTATCTGCCCCC	ref_285_RC	24	17	24	24	25	24	23	24	28	20
CATGCACTGATGGTTT	ref_285_RC	1	3	5	5	10	2	5	5	8	1
AGCTTGGCGGGGCGTT	ref_285_RC	10	12	13	12	7	9	8	10	11	7
CTCGTCTTACGGATGC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
AAATGGGATACGCGAG	ref_285_RC	12	14	11	12	14	14	10	8	13	8
TGGGGGTTACCCCACA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CACCTTAGCAGGGCAT	ref_285_RC	6	7	4	3	7	3	6	7	11	9
CTATGACGTAGCTACG	ref_285_RC	28	34	27	26	30	27	17	17	23	30
TCTTGACAGGGGCGCT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CGCATGGTGGTTCAAA	ref_285_RC	141	126	203	126	149	146	131	144	152	141
AGTGGTTAGTTTTGGC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GACTGCACAATTAGTT	ref_285_RC	27	31	30	21	21	32	31	18	20	27
ACTTCCCCAATCTAGA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GAGTGCGTAGAGCGGT	ref_285_RC	87	83	118	86	92	71	96	92	95	74
GCGGAACCATTAGCCA	ref_285_RC	20	14	22	20	17	18	20	31	15	5
ATAACCCGGATGAGTG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
ACTACTGTAGTGTAGG	ref_285_RC	49	58	71	37	49	33	42	35	37	46
TTTTTACCGCTCCGTT	ref_285_RC	3	20	16	11	10	5	10	9	10	10
AAATGCGTGTGGATAC	ref_285_RC	19	20	19	16	17	14	24	17	16	12
ATTTTGTGCTGGGGTA	ref_285_RC	10	10	15	9	11	11	14	12	10	11
TACGCCTAATAGGTTT	ref_285_RC	20	19	35	27	29	33	23	29	33	25
GGCGTTGTGTTCAGTC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GTTATGCCTTCCAGAA	ref_285_RC	9	23	34	20	14	14	11	12	10	15
ATGTCGCAAATTTATA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GAGACCGGAGGCGTTT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
ACCGATCCTGCGTACT	ref_285_RC	183	133	220	172	142	167	164	175	158	154
AGTTGTTATTCAGGGC	ref_285_RC	11	9	5	11	14	16	11	17	8	11
TTTTAGTGATATACTA	ref_285_RC	13	4	8	8	8	7	11	4	10	7
GTTCCTCGGTGTATCA	ref_285_RC	16	8	15	6	8	9	10	8	12	7
AGACGCGAATTCTGCT	ref_285_RC	16	16	19	17	14	15	13	22	12	15
GGGGCACTCCTCACTC	ref_285_RC	36	27	42	29	31	27	40	29	40	23
AATTGGAAGTTTTACA	ref_285_RC	74	74	72	69	56	80	51	53	71	51
TTCTTTATCCCTCGTG	ref_285_RC	55	39	55	55	47	46	39	46	43	49
AACGAAGCTTGGATGC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
ACCTCATAAGTGCGTG	ref_285_RC	89	82	91	62	70	56	83	62	91	73
AACTCTTGACTCGTCG	ref_285_RC	26	17	28	36	29	28	27	36	37	31
GTTCGACCAAATATGA	ref_285_RC	55	59	66	42	46	52	47	48	43	51
TGCGTTTCGTCTTCTC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CGCTCATTGCTTCATC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
AATTGTCAGTCGAGAC	ref_285_RC	15	14	13	12	25	9	14	9	9	14
GCGTCTCGGTCCTCCA	ref_285_RC	78	73	104	64	99	74	84	84	99	64
TTCAAATCCGGTCCCT	ref_285_RC	21	31	34	25	25	43	44	16	35	27
ACTTAGGCGCATCGAG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GACCTCGATTGTCTTA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
ACCACATCCGGATTGC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CTTCAATCCTGTTTAC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GTTAAGTTTTTGTCCC	ref_285_RC	28	17	26	24	29	21	28	23	9	27
GACTGTAAGCTCTTCG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TGAAGTTTACCGGACT	ref_285_RC	23	33	36	37	29	23	37	14	35	27
TCCTCTCTATCCCTTA	ref_285_RC	30	14	32	27	26	34	22	13	23	21
TCTCACAGGGGGGGCT	ref_285_RC	4	3	3	2	3	1	4	2	5	3
TACCCCCACCTCACAC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
ACGATATTGGTTCGTT	ref_285_RC	22	18	14	15	14	11	5	13	11	10
AAACGGACCATTGTTC	ref_285_RC	3	4	1	1	1	2	2	2	2	0
CATACTCGAAATCAGT	ref_285_RC	14	26	25	12	20	12	12	14	20	10
CGTATTCTGGTCGCAT	ref_285_RC	18	18	24	11	24	16	31	19	15	16
CTATTACTAGCGGTCG	ref_285_RC	21	21	11	19	26	13	17	6	16	17
GCAGTACAGTATATTC	ref_285_RC	81	88	118	83	83	69	119	89	108	83
GGAACTTACTCCCCCT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TTGTGCATCTTTTTCG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GTTACAGCATGCCGCA	ref_285_RC	7	10	13	6	11	10	19	13	11	12
TACTCACAATTCAAGT	ref_285_RC	45	57	45	32	65	34	72	27	63	28
GAGTAGAATGCTCTCG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CTTTAAAGGTAAGCCT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
GATCACTGTGCTGACC	ref_285_RC	7	4	4	2	4	1	5	0	5	1
CTCAGGAAGGACATGC	ref_285_RC	17	11	25	16	7	9	7	8	8	15
CTCAGTTCTAATCCAG	ref_285_RC	13	2	4	6	16	6	13	10	9	15
AGACCGAAAAACATGG	ref_285_RC	32	30	26	25	21	24	24	21	16	15
GACGGGTCCACGAGTG	ref_285_RC	75	83	76	76	69	62	70	45	61	63
TCATAATCGTTGTTTA	ref_285_RC	6	9	19	14	13	17	13	8	8	13
GAAAGGCTCGTCTGAA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TCTATTGCTACAATTG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TTGGGCGCAGCTTGAA	ref_285_RC	18	20	29	18	22	19	18	18	29	19
CAATGAACTTAGAACT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
ACTTGGCTAGAAGATA	ref_285_RC	23	33	37	27	29	26	21	26	36	30
TCCGTCCGTTGATCCC	ref_285_RC	10	24	19	11	27	17	23	13	26	11
AATTCACTGTTCTTTA	ref_285_RC	55	46	44	39	36	41	37	35	42	36
GCCCGTTGTTGACGGT	ref_285_RC	48	59	71	55	67	51	62	42	44	57
GGGCCAAATGTGCCGG	ref_285_RC	0	3	2	3	5	1	1	1	1	0
TGATGCTCCGCACTTT	ref_285_RC	34	30	38	26	34	33	35	41	37	30
AGGTCGCCTTTCCCTT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TACCTTTTTACATGAG	ref_285_RC	21	20	30	24	21	14	22	24	16	29
CGGAATGCTAATCTTG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CCCTAGACTTTGAGGT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCACCATCTGCG	ref_285_RC	9	10	6	11	13	5	23	5	18	12
CCGGCACGGACGGGTG	ref_285_RC	52	36	67	52	39	44	39	41	63	50
GTCCCCAAGAATTATC	ref_285_RC	21	39	38	29	28	25	39	35	33	32
GCTGCCTACTGTTCCG	ref_285_RC	17	30	18	23	22	24	28	13	27	22
CCACCATACGGATTCG	ref_285_RC	19	23	24	33	16	17	17	12	17	9
GCCGAATTCCATGCGG	ref_285_RC	26	19	18	17	19	23	22	25	18	14
GTCTTCGTTTCCGTGT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TTGCAGCGAGCTAAGA	ref_285_RC	0	0	0	0	0	0	0	0	0	0
TGGATGCTAGCATTAG	ref_285_RC	1	5	7	3	7	5	2	4	11	2
TTGTCCTTGATCTTTG	ref_285_RC	43	42	55	41	57	50	42	33	54	35
CATTAGCCGTTAGTAG	ref_285_RC	17	14	13	15	19	16	12	10	20	7
GACAAATGTGTTGTCG	ref_285_RC	13	13	22	8	11	13	9	15	19	8
GCAACCTTTAGTGCTA	ref_285_RC	33	49	36	24	51	20	46	39	54	31
TCAACGCCACTTCGCA	ref_285_RC	94	75	99	91	94	79	96	74	92	81
TTCTGATCCAGGCAGA	ref_285_RC	36	59	59	45	63	56	40	39	61	45
GCCCTCCCGAACATAC	ref_285_RC	156	143	221	150	153	150	165	163	158	155
AAACGTCATTCGTCGC	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CTCTGTAATTACGTCC	ref_285_RC	8	9	13	10	10	9	7	7	12	13
ACATTCGGCGAACCCG	ref_285_RC	14	14	22	17	13	21	18	14	11	10
GCTGTAGCAGTACCCT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
AGTGTTTAGTGGTTTT	ref_285_RC	0	8	5	1	5	3	6	2	1	6
CAAGGTTTTCGCTCCG	ref_285_RC	94	106	145	106	95	111	107	98	98	84
TCACAGACCATCTCTT	ref_285_RC	126	124	129	116	113	111	141	116	130	95
CGGCAGCACTGGTCAT	ref_285_RC	160	140	207	179	127	158	154	144	178	155
GTTGTACACCACTGGT	ref_285_RC	0	0	0	0	0	0	0	0	0	0
CACTTGTTCCTTTCCG	ref_285_RC	0	0	0	0	0	0	0	0	0	0
AAGAATGTCTTTACCA	ref_285_RC	6	5	15	5	5	14	6	8	5	10
TCCCAAACGTGCTATG	ref_285_RC	8	43	18	18	66	9	49	12	57	6
GTACGTGCTCCCAAGT	ref_285_RC	9	14	2	5	31	11	33	8	40	7
TACCTGGAGCACCCCC	ref_285_RC	13	16	17	19	11	12	17	10	9	10
ACGCTGTTTTTGTGAT	ref_285_RC	17	22	20	17	24	19	22	17	16	11
TCCGTTGATCCGGGGG	ref_285_RC	41	49	61	51	42	41	49	39	72	49
TCCGATAGCTACCAAG	ref_285_RC	25	22	22	21	32	19	31	13	34	18
CTATCATTGGTCGAGT	ref_285_RC	28	25	32	31	20	25	32	19	31	26
CGAGTCCCTGGAGCTC	ref_2132_negative	621	124	712	453	143	568	131	565	129	622
TGAGGTTTACTTACTA	ref_2132_negative	100	26	103	76	31	89	36	84	35	79
ATTGTTTTCTTCTCCC	ref_2132_negative	118	22	147	90	39	134	27	100	32	111
TGTGAGACAAGTTCCG	ref_2132_negative	124	18	140	76	20	110	23	106	27	98
TTTTCTGTCACTGCAA	ref_2132_negative	462	106	477	273	121	402	98	337	111	402
GTGGGCGATTTTACCC	ref_2132_negative	524	131	564	367	127	453	122	384	138	446
GGTGTTAACGACCTAT	ref_2132_negative	152	20	119	84	27	85	18	80	26	99
TCACTATATATCTCTC	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
ACACGTTCATCATGTT	ref_2132_negative	129	36	145	115	32	147	34	139	30	153
CGGATATGAACTACTC	ref_2132_negative	120	16	109	61	21	87	14	85	30	89
GCAGCTTATACACGGA	ref_2132_negative	291	97	325	228	97	262	102	270	102	279
GTCAACATAATCTATT	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
TTTTGCGCTTCTACTC	ref_2132_negative	121	30	175	103	28	120	32	84	39	116
CCCAGTTCATGAATCT	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
CTCCTCAAAGTTTATT	ref_2132_negative	158	35	219	133	58	179	46	126	44	179
GCTTGTATGCATACGT	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
GCTCTGTCAACACGGA	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
TATTAATGTTTCGCTT	ref_2132_negative	329	68	346	200	64	291	66	236	75	281
CGTTTAACCATTTACC	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
ACTTCCATACGTACAG	ref_2132_negative	14	3	23	8	6	16	5	13	5	13
TCCTCCTCTTCGGTCA	ref_2132_negative	628	127	562	373	122	466	139	391	131	519
TGGGCACGGAACCGCG	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
TTGCCACTCCGGTACA	ref_2132_negative	79	20	104	74	24	81	25	70	25	86
CGTTCTAAATGCTCTT	ref_2132_negative	92	20	114	53	30	106	27	105	26	99
TTCTATTTTCAGGTGG	ref_2132_negative	331	65	402	251	64	298	76	242	84	284
CGCCCTGCTTCAATGG	ref_2132_negative	371	48	337	240	59	308	68	280	71	333
CTTTTAAGTGTGTTCA	ref_2132_negative	98	27	113	56	30	84	29	88	25	89
TCCAATCTAAGCTGGC	ref_2132_negative	565	126	533	340	141	381	120	408	118	394
TATCTATGATCGCTTT	ref_2132_negative	107	37	162	86	33	99	25	76	36	114
GTCTGGTTCTGGCTTT	ref_2132_negative	291	69	302	210	66	255	61	252	86	272
GGAAACTTTCCGCTGA	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
CTTCATGGTGTCTGAA	ref_2132_negative	43	12	60	40	9	54	13	55	17	47
AAGGTCATAGGTTTGT	ref_2132_negative	652	155	754	433	143	569	169	494	168	563
CCGGATTAGGGACGGT	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
CCCTTAGGGTATTCCC	ref_2132_negative	145	29	187	125	52	138	23	126	27	137
TTTGGATTTACGTGGT	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
ACGCTAAACTAAGGCA	ref_2132_negative	205	98	230	155	54	204	65	171	62	204
TTCCCCGTGGCCATCG	ref_2132_negative	76	20	70	52	29	58	21	63	17	54
CGTCACGAACCATATC	ref_2132_negative	586	136	688	441	128	584	122	398	143	519
TTGAAAATTATCTAGG	ref_2132_negative	60	12	57	39	9	46	18	39	15	44
CACGGGTCGGGTTGAC	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
CCTCCGAGAGGTATGC	ref_2132_negative	217	76	267	205	98	208	69	234	86	174
CAATGCGATCATAGTG	ref_2132_negative	236	77	354	206	64	233	70	230	86	240
TAGGGCTCTCTATTTA	ref_2132_negative	234	66	253	201	59	225	45	212	68	230
GGGGATCAAACCTCCA	ref_2132_negative	118	25	94	48	20	76	22	52	31	78
AGGCGGATTCGTAGTA	ref_2132_negative	66	12	81	66	13	60	12	60	12	69
TCAGACTGACCATCTC	ref_2132_negative	268	69	270	171	88	216	76	170	66	214
CACCCTGTCATTTCTA	ref_2132_negative	291	56	283	176	65	247	82	220	70	249
AGCACGACCTATTTTT	ref_2132_negative	387	83	436	294	98	353	85	315	91	366
TACGGGAATCGGCGGC	ref_2132_negative	412	92	477	278	66	363	86	264	84	354
AGGCCTCTGAGTCTTG	ref_2132_negative	173	47	180	146	48	159	38	142	51	162
CAAGGTCTTTCAGGCC	ref_2132_negative	115	56	87	75	46	56	55	71	57	82
AAGCCGTCCTACTCAG	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
CCCCCGGAGATCTTTC	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
AAGAGATCAGTCAACA	ref_2132_negative	29	8	35	26	10	34	6	28	15	24
ACTGATGCGAGTCCCG	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
ACTGGCTAAATGAAGT	ref_2132_negative	121	37	138	99	33	105	36	76	27	99
AGTCACGAACCATATC	ref_2132_negative	0	0	0	0	0	0	0	0	0	1
CGTATCTGTACTATTT	ref_2132_negative	102	11	105	78	23	90	19	83	23	82
CAAACAGGTGCCGTAG	ref_2132_negative	183	35	199	148	36	153	48	148	33	160
TAGAGTTTATATACAC	ref_2132_negative	122	45	144	93	53	136	41	115	47	124
GCTTGCTCTTGTTTTT	ref_2132_negative	585	142	636	436	125	523	132	434	149	485
TACGTGCAAGAGGTGC	ref_2132_negative	42	11	50	23	9	28	13	26	15	34
TTGGGTGATCCCTTGA	ref_2132_negative	458	86	494	317	109	378	99	340	92	387
CCAGGGCAAGTGAATA	ref_2132_negative	225	75	277	176	60	200	71	208	85	193
TTCTATTCAATCTAAG	ref_2132_negative	100	28	82	61	24	73	15	51	16	79
ATATTTTGTTCGCAAC	ref_2132_negative	27	8	50	15	4	30	10	22	7	33
TACCAGGCGCCAGACG	ref_2132_negative	404	90	480	306	102	377	87	386	99	387
TTGGCTGCCAACGGGG	ref_2132_negative	511	112	576	379	126	459	126	401	107	464
AGGTCCCTGCGAAATG	ref_2132_negative	72	19	60	34	17	56	13	39	9	46
AGGGCGCTCCGCTTCG	ref_2132_negative	1296	245	1504	892	275	1137	257	1009	271	1107
GACCGATGCAAGGTGC	ref_2132_negative	78	18	104	67	20	87	25	86	25	76
TCTGTGACTCCGTTTT	ref_2132_negative	253	58	304	182	64	232	56	194	57	254
TCGTGGTTGTCTGTGG	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
TGTTCGGCCCTTAGCG	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
GAGGGCTTACGACGCT	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
CTTGTCCGGTTCAGGC	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
ATAGTATTGACCTGGT	ref_2132_negative	260	44	261	170	44	235	61	182	55	236
GATCTTGTGAGTAATT	ref_2132_negative	380	98	381	228	100	340	86	274	104	320
GTTAGATTCTGCCACT	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
CTGTGTCGATGCCCAC	ref_2132_negative	260	65	305	187	72	243	57	197	67	218
GTACGGTGGTTACCAG	ref_2132_negative	235	44	289	210	58	234	57	187	66	226
GCTCAATGAAATTTGG	ref_2132_negative	0	0	0	0	0	0	0	0	0	0
TGACTATTCTTTCACG	ref_2132_negative	93	26	94	84	22	92	33	78	22	83
TCCCCCCTTCAAATGC	ref_1700_reverse	12	39	17	12	42	13	57	13	53	3
AACTCCATACTTCGTC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AGTCCGCATTCTCGCT	ref_1700_reverse	8	10	8	8	17	9	10	4	17	7
TTAACGGTATCCGCCG	ref_1700_reverse	6	5	3	7	4	9	0	5	7	5
TCGAATTTAGCAGCCT	ref_1700_reverse	6	9	8	12	13	10	6	17	22	12
TTCCAGCCTGTTTAGG	ref_1700_reverse	14	96	34	16	82	11	88	14	69	14
TTCGTTGGCGGTTCTC	ref_1700_reverse	4	11	5	4	13	1	5	7	3	3
TGGATAAGGACAGTTT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCCTTATGAGATT	ref_1700_reverse	10	20	17	16	11	13	19	8	14	12
ATATGAGAGACCTTTT	ref_1700_reverse	1	10	3	7	8	0	5	2	3	7
GCACAAGGGTATGTTT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTCTGCAGCGTGC	ref_1700_reverse	46	68	63	55	91	48	96	45	89	52
TTTGTCTTGTTGCGCC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CACACCGCAACACGGA	alt_1700_reverse	6	12	6	6	21	8	23	9	16	7
AAATTCAAGAGCTTGG	ref_1700_reverse	59	84	80	66	80	49	96	61	105	56
CTCATTGACACATGAT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATCCAATGAGCGACCT	alt_1700_reverse	8	13	7	9	16	12	18	13	14	6
TCACGATGTTCTCATG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CTATCAATCTTCTTTG	alt_1700_reverse	5	13	14	9	13	6	25	7	16	6
CTCGCATGCAATGGTC	ref_1700_reverse	23	33	20	26	25	16	22	9	39	20
TGTTAGGGATCTAAGT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCTAATTGTCCTGTAT	alt_1700_reverse	59	77	74	58	84	58	90	48	112	60
TACGACTGTTGCAGGC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTCTTTTTCTTCG	ref_1700_reverse	62	133	49	50	131	31	132	38	125	46
TTGAACCAGCAAGCCT	ref_1700_reverse	8	17	8	9	17	11	19	14	27	13
TCTCCGTTGCACTTCC	ref_1700_reverse	7	22	14	7	29	12	22	15	19	9
GGGTTCAACGTTATGC	ref_1700_reverse	65	82	76	56	135	81	118	83	122	71
CTAAGCCAAAGGCCTC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCCATCCATGCCT	ref_1700_reverse	6	14	5	6	12	6	15	6	7	6
AGAAAACTTAGATTCG	ref_1700_reverse	12	25	11	7	21	7	26	8	21	12
ATTCCATGGCGATAGG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCAGACCCTAATGCGT	alt_1700_reverse	5	7	6	4	13	2	7	4	7	5
TGATCTTTGTGTGACG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AATGATTTGGCCGTCC	ref_1700_reverse	9	38	31	21	26	25	34	15	45	13
TATTCGACCCCACCAT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCGGGTTTAGGCG	ref_1700_reverse	4	13	2	1	10	1	4	5	12	4
AATCCTCTAGGAATAT	ref_1700_reverse	21	37	15	17	24	15	27	11	36	18
ACATCGTGCGCATCTA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATTATCCTTTTGTGCA	ref_1700_reverse	35	36	36	34	34	24	39	28	50	22
CTTGTAATTCTTCTGG	ref_1700_reverse	10	13	6	5	16	6	14	3	15	8
CATTGATTGTCCTAGT	ref_1700_reverse	11	37	29	26	39	15	49	9	68	15
GTTGTACCCATCTGAT	ref_1700_reverse	14	20	13	12	35	15	27	15	26	13
GGCTGTTATTCCGGGA	ref_1700_reverse	6	10	8	4	11	4	18	7	13	4
TCATGAGCCTTAGATC	ref_1700_reverse	22	32	16	20	34	13	24	18	26	14
GGTTGTATTGTCATCA	ref_1700_reverse	5	26	12	8	16	15	19	11	14	9
GTTTCTGCCTGCAGAC	ref_1700_reverse	0	0	0	5	4	1	3	2	7	1
TATTCTGGGTCATAGA	ref_1700_reverse	19	27	25	20	29	14	27	16	28	15
TTTGAATTGCCGGCAG	ref_1700_reverse	13	11	17	9	16	6	17	8	20	11
ACATGCTCTGCTATAA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCCGCCGCACTAC	alt_1700_reverse	26	31	23	29	36	25	40	30	46	21
CTCGACAGCGCCACTG	ref_1700_reverse	16	38	19	13	46	13	28	9	41	7
ATTATGCCTGAAACTG	ref_1700_reverse	21	41	39	29	37	28	56	22	67	29
AGGTCTCCTTATCTCA	ref_1700_reverse	9	14	8	4	14	4	8	3	19	10
AGTGAGTATTTGGGAA	ref_1700_reverse	31	33	36	31	33	33	19	25	38	26
CCGCGCGGAAACATCT	ref_1700_reverse	75	105	92	89	96	77	97	55	115	70
GTCCGGGTAAGCGCCG	ref_1700_reverse	3	5	4	8	6	5	9	6	12	4
CTGGGTGGTTGTGTCA	ref_1700_reverse	11	34	22	12	24	11	36	12	31	18
GTTATGTGCTGTTCTG	ref_1700_reverse	87	161	108	107	162	90	198	63	196	68
ATCTTCGTTGATGTTC	ref_1700_reverse	1	14	5	5	10	6	9	13	5	9
CGAATAACTGCTCTGC	ref_1700_reverse	41	56	49	36	68	49	81	31	61	39
GAATTCATAGTTTCAA	ref_1700_reverse	7	16	11	6	10	10	15	12	12	9
CAGTCCTCCTCTGGGG	ref_1700_reverse	21	23	38	16	48	19	43	18	57	30
GCTGGACAACGGGCAA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCAACCCAATGTGGTG	ref_1700_reverse	2	4	4	7	0	3	0	2	3	1
GACTATCTTTAGGATC	ref_1700_reverse	8	10	10	5	11	5	17	5	11	6
TGAGGCCGGAATATTG	ref_1700_reverse	15	36	14	12	12	13	26	13	18	15
GGATATCCTATATAAT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CCGCATTAGGTGTGCC	ref_1700_reverse	23	65	46	21	60	25	75	23	66	26
GAGGTATTTAGTGGTT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGTATGTTTGCTT	alt_1700_reverse	102	181	123	110	191	76	196	83	193	82
TGTAGAGGCCGGATAA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATATCAAGGGTAAGAT	ref_1700_reverse	43	55	73	36	62	32	48	36	57	27
CATCTTCATGGTATTG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AATGCTACATGGGACG	ref_1700_reverse	13	20	9	15	17	12	24	12	22	8
TCAGCCTCAGGGGCTT	ref_1700_reverse	12	25	17	18	35	11	27	22	36	18
GTCGATCGCCATCGGC	ref_1700_reverse	56	65	80	50	49	60	68	47	64	34
ATACATTTTTTGAAAA	ref_1700_reverse	26	39	28	28	39	35	38	25	36	31
AGTCCATACTGCCTGC	ref_1700_reverse	2	5	2	2	5	2	6	4	2	10
AGTGCATCGTATGGGT	ref_1700_reverse	5	12	4	4	8	3	11	1	16	2
TACGAACCTCCGGCCG	ref_1700_reverse	14	34	17	13	29	11	14	11	14	9
CATCAGTGATTATATT	ref_1700_reverse	73	134	109	92	128	87	172	63	156	96
AGGTCCGCCGCGGGTG	ref_1700_reverse	19	36	29	32	55	23	30	19	55	34
GCTGTACATTTCTGGT	ref_1700_reverse	18	26	27	30	41	15	37	24	48	29
ACGGACACATTCCTTG	ref_1700_reverse	11	8	9	8	11	6	10	2	7	7
TTCAGCTGCCGGTGCG	alt_1700_reverse	15	22	10	7	18	7	21	12	25	6
TCCCCGGTCTAGAGCC	ref_1700_reverse	3	12	8	3	22	4	10	10	16	5
CATTTCCACCCAGCTA	ref_1700_reverse	29	60	51	35	58	41	51	33	58	34
TTCTGGCCTCGTAAGT	ref_1700_reverse	25	33	26	23	41	26	28	16	36	18
CCTCTACCAACCCATG	ref_1700_reverse	13	28	18	15	23	16	49	14	29	16
GATGAGAACAGCTAGC	ref_1700_reverse	16	31	24	13	40	18	31	16	41	22
GCCGGGCATGCCGAAC	ref_1700_reverse	12	12	10	13	12	6	12	4	13	5
TAGTCTTAAAAGTTTG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCGCTCAAGTACA	ref_1700_reverse	57	78	72	43	68	41	73	40	61	28
CTGTGGATTTTCGCCA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AAGGGTTAATGCTTCT	ref_1700_reverse	8	4	6	5	7	2	3	11	9	5
TTCTACATAGTTACTC	ref_1700_reverse	3	13	9	7	7	5	14	6	8	5
TCAATTTTTAGTCTGC	ref_1700_reverse	8	23	12	8	21	8	17	8	23	8
GCCTTAATTGAAGACG	alt_1700_reverse	187	319	217	219	331	198	386	189	334	198
TTTAGTCCCATCACTC	ref_1700_reverse	3	5	9	6	13	4	9	3	8	3
TACCCTCGCTCGGCCC	ref_1700_reverse	30	50	43	37	47	35	42	22	55	29
ATTGAACTTATGGCGT	ref_1700_reverse	70	100	77	75	84	64	95	55	98	83
AATTTATTATGGCCCA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGCCAGATTGCAG	ref_1700_reverse	20	16	11	10	29	14	21	15	21	8
TTTACAAAAAATAATG	ref_1700_reverse	8	12	14	23	20	11	17	8	18	10
TCGTGCGCCTAACATC	alt_1700_reverse	21	33	33	19	32	23	42	25	40	21
CGTCTCGGTACGTCGG	ref_1700_reverse	21	19	21	13	42	17	41	16	23	16
ATAGCACGATGCGCCC	ref_1700_reverse	36	44	40	26	51	31	50	42	45	30
CGGCTGGAAATCCTAA	ref_1700_reverse	11	14	15	5	9	12	22	6	8	10
CTATAGGTCTTTACTG	ref_1700_reverse	18	36	31	17	43	11	29	14	32	16
TTGGCTCCTTAGCTAC	ref_1700_reverse	5	10	7	13	21	7	16	5	19	11
TCGGTGCATAAGTAAA	ref_1700_reverse	19	43	19	21	34	10	47	12	50	5
GGAGTAACGTTTGCCC	ref_1700_reverse	11	27	25	15	29	11	25	9	25	12
ACTCAATTGCATACCC	ref_1700_reverse	11	29	11	26	39	10	31	12	26	6
CGCGTCTGCCGGTTTC	ref_1700_reverse	6	12	6	6	15	7	13	9	16	11
TGTACCACGTCAAATG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATACCATGCAACCTTG	ref_1700_reverse	3	6	12	5	16	5	8	4	11	9
GCCCATTTTGCCTTTG	ref_1700_reverse	10	11	12	7	11	19	19	5	13	6
CCTATCTTAACATTTC	ref_1700_reverse	21	47	29	19	57	24	25	19	36	22
CAAGTTTCGGGTCCAT	ref_1700_reverse	2	4	4	4	15	10	3	5	12	2
CTCGTACCCACTTCGG	ref_1700_reverse	2	5	2	0	4	0	0	0	3	0
GGCGTTTATAGCTCTA	ref_1700_reverse	87	98	80	63	89	60	94	55	112	65
GTGTTCTTAGTATGCA	ref_1700_reverse	4	2	1	0	4	0	3	5	3	0
GCGGTTCTAGAGTGCT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCGGCTACCTTTT	ref_1700_reverse	4	21	7	5	16	7	11	3	14	5
CCGTCTAACTGCCCAT	ref_1700_reverse	29	48	36	25	46	39	48	25	73	23
GGGCACTCTACCGGCA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCCATCTGGAAGT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCATTGCCCTTGC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCGGGTCACCCCC	ref_1700_reverse	0	0	1	0	1	2	0	0	0	1
TTCCTATGATACCTAG	ref_1700_reverse	50	84	67	58	89	43	89	55	95	46
GCGGGTCCCCATTTAG	ref_1700_reverse	5	3	3	6	6	6	8	7	5	3
ACCTTTCTGGACTGAC	ref_1700_reverse	2	16	8	8	22	0	20	3	20	3
TACACTTCTAAACCTG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CCGTATTTCCGTGTGG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GGCAATTCAGCGCTGG	ref_1700_reverse	112	176	134	138	196	142	205	129	216	131
TTAAATGGTGGCCGAT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAGACTTTTTGTC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AGTACAAGGATCCGTA	ref_1700_reverse	7	22	11	11	20	11	12	10	26	11
AGCACGTCATCCGTCC	ref_1700_reverse	42	42	32	31	62	23	59	36	44	30
CGTGCAGCCTTCTTAC	ref_1700_reverse	25	46	35	30	40	32	55	27	57	17
AATAAATCTTTTAAAT	ref_1700_reverse	61	74	67	53	68	53	72	60	103	59
AGGCAGTCTTTTATAT	ref_1700_reverse	3	10	7	7	12	8	16	5	8	3
CCTGCGACTTGGGCGT	alt_1700_reverse	11	23	11	2	14	9	24	10	12	9
CGTTATCAGGTAGTTG	ref_1700_reverse	12	22	35	12	21	19	15	12	19	7
GTCAACACGCTGGTCC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGTAAAGTTCCTG	ref_1700_reverse	7	4	4	7	15	6	13	6	20	12
GACCGCCGCGGTTCCT	ref_1700_reverse	80	161	91	99	180	99	174	97	192	73
CATCCCATAGTTTTTT	ref_1700_reverse	36	49	32	34	53	20	49	23	67	31
TGGCGTTCCTCTCAAC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GGATGACAGCGAATGC	ref_1700_reverse	138	242	189	144	210	171	209	154	225	154
CTACCAGGGCATAGTC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AGCAGAACCCACGGTA	ref_1700_reverse	64	109	86	61	104	63	93	64	94	63
TTTAAGCTTTGGGCCT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
AACTGTTGCCTAATCA	ref_1700_reverse	18	24	17	14	37	12	21	23	19	16
AGGGTTAGTGACTAAG	ref_1700_reverse	40	55	47	39	59	42	81	35	62	29
TACGGCTTTCAGGAGT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CCCGACGTGCGGTCTC	ref_1700_reverse	41	73	33	46	50	39	65	29	85	30
ATTTAGGTACATCCGT	ref_1700_reverse	6	19	9	10	15	10	12	9	14	7
ATACGCCGACCTCCGA	ref_1700_reverse	24	43	23	20	45	15	46	24	40	24
ATTTGGTCCCTGTAGC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCCAAACGTCGGA	ref_1700_reverse	6	9	6	5	14	3	6	3	10	6
CCGGCAGTTTGTAGGA	ref_1700_reverse	1	0	3	4	3	0	7	0	1	1
TGATTACGCGGTGATG	ref_1700_reverse	26	30	27	30	42	17	35	15	46	20
GTCCTACGGTTGGAAT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CTCGACGCACACCGCA	alt_1700_reverse	34	64	52	29	45	32	53	30	52	35
GCGCTTTTCAGACAAT	ref_1700_reverse	58	86	74	42	70	55	89	47	116	44
AGCCGTACTTATTACG	ref_1700_reverse	88	104	108	78	124	69	133	72	139	69
AGTTAGTGAGTCTGCT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
TCTATTCTTCGAATCT	ref_1700_reverse	59	82	56	66	80	70	94	56	76	52
TTATTGTATCAGGCTA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCCGGCCCCTAAC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTATCCTCATCTG	ref_1700_reverse	84	235	85	86	279	84	289	81	259	59
AGGTATCGGAGTAGGG	ref_1700_reverse	9	17	11	10	23	9	14	5	12	8
TGCTGCGATCCCGCAT	ref_1700_reverse	39	64	54	53	62	55	50	46	59	45
CTCTGAATGAGTGATC	ref_1700_reverse	139	217	158	145	157	114	209	136	224	114
TCTGCTAGTCCATCGG	ref_1700_reverse	26	28	22	28	29	24	41	23	40	16
GGGGCCTGCTCGGCTC	ref_1700_reverse	48	68	37	53	62	32	61	27	64	43
TCAGCTCATAGGTCGT	ref_1700_reverse	25	60	43	36	35	22	63	24	69	23
AGATCTGCATACTGAG	ref_1700_reverse	9	22	21	9	9	10	17	11	27	9
ATCCCTCTCAACTGAC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGGCAGCATCTTT	ref_1700_reverse	6	13	9	4	13	3	12	8	18	14
TATTAGAAATGAAAAA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTAACATTTTGC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATTGAGCGGACCGGGT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCCCTTCATGTGA	ref_1700_reverse	13	28	18	15	30	15	17	11	21	12
AACTATAAATAGGCAC	ref_1700_reverse	8	18	11	9	19	8	18	8	19	29
GATGTCACGCTAGTAT	ref_1700_reverse	43	73	56	62	102	47	90	35	77	41
GGCGGGTACTGCTTTG	alt_1700_reverse	7	10	7	9	7	5	3	5	8	5
TGATTACCTCTCACTT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGACTCTTGTAG	ref_1700_reverse	1	15	3	7	13	7	8	2	10	2
GATCGAACACGCTTTC	ref_1700_reverse	19	28	22	14	30	19	34	10	35	18
TTCGGGTTCGTAGCTT	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACATACCAACTCAATG	ref_1700_reverse	13	17	11	8	16	16	17	5	19	14
CGGTCCACGCAGTGGT	ref_1700_reverse	8	9	13	1	13	9	13	8	7	4
TGTTGTGCATGTCACC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCGCTCAAGCAGG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACTATATTATTTGAGC	ref_1700_reverse	4	3	12	2	5	5	11	2	5	0
TTAGCAATGTCGGCAT	ref_1700_reverse	26	19	41	31	28	26	30	27	42	17
GGATAGACGACAAATG	ref_1700_reverse	19	26	29	13	25	10	24	11	27	8
TATACTCCTATTCGCT	ref_1700_reverse	29	68	35	27	75	39	91	32	80	34
GTGCACATGTGATATA	ref_1700_reverse	10	19	18	14	14	7	24	14	25	10
CTACCGGTTCCGCACT	ref_1700_reverse	13	19	32	31	32	20	37	14	43	16
TCGTCGTAGTACGATT	ref_1700_reverse	12	14	16	12	17	6	14	9	18	11
ATTCGTTTATCTTACG	ref_1700_reverse	9	12	12	8	11	9	13	8	20	13
TCAGGGGATCGCATTG	ref_1700_reverse	12	28	8	18	33	11	16	14	19	21
TTCGTATTTCCGTGTG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
GACCGTTCAATAGTCT	ref_1700_reverse	11	14	5	8	11	2	14	3	15	4
TCTGTTTTGGGATGGC	ref_1700_reverse	0	0	5	1	0	3	4	3	2	1
ATGTTCGGTTAGGTGC	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
CATTCTGAAGTGGAGA	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTAGGAGTAAACG	ref_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACACGCGTGACTAGCC	ref_1700_reverse	41	65	50	40	68	39	76	26	85	37
ATTACAGCGTGTGATT	ref_1700_reverse	16	33	26	36	29	34	38	13	31	23
GGCCAGCGTCCTACGC	ref_1700_reverse	59	101	65	71	93	52	93	64	107	63
TTTCTCTCTGCGCGCA	alt_6090_new	0	0	0	0	0	0	0	0	0	0
CGAGACTACCGTCACT	alt_6090_new	16	44	26	21	44	19	51	17	46	18
GTTTTAGCCGGCGAAA	alt_6090_new	190	395	227	195	396	169	389	168	398	175
ATGCTTAAAGCCCGTT	alt_6090_new	17	58	20	27	61	12	43	24	57	25
TTCTCATCTTTAACTA	alt_6090_new	29	51	27	29	53	16	45	18	58	25
GTGAACTTTGCTATGT	alt_6090_new	0	0	0	0	0	0	0	0	0	0
ACCCACTATGCCGTTA	alt_6090_new	0	0	0	0	0	0	0	0	0	0
AACTGGTTGTGTTACT	alt_6090_new	7	11	12	4	16	8	15	1	16	8
TAGGGGGGTGCCTGTC	ref_6090_new	4	10	9	4	13	4	8	4	6	6
GCAGAGTAGGGCATGA	alt_6090_new	143	303	161	123	331	130	325	118	386	134
CGGATCATAATTGCGC	alt_6090_new	14	33	6	13	31	13	33	15	33	11
CAACTTGAAGCTCTAT	alt_6090_new	5	14	10	18	6	6	10	5	10	6
CTATTTATAAGGCATG	alt_6090_new	11	29	11	7	22	14	20	7	24	8
AGCTTCTGGACTACTT	alt_6090_new	33	69	52	45	94	37	71	52	95	51
CCTAGATTTGCATTAG	alt_6090_new	0	0	0	0	0	0	0	0	0	0
GGGCATGCCTCCAGCG	alt_6090_new	23	71	56	45	54	36	68	37	60	29
GGTCACGCTCCTGGAG	alt_6090_new	53	93	46	37	71	36	88	34	99	42
ATACAACCGGGGGAAT	ref_6090_new	6	25	12	10	30	10	26	18	18	6
GTCTCAACTGCCGTAG	alt_6090_new	13	42	19	17	53	24	41	25	48	21
TCTAATTACTAGCTTA	alt_6090_new	12	35	12	16	37	22	36	11	29	17
GTTCCGGTTGAATTGC	alt_6090_new	6	8	4	6	12	2	13	4	12	3
TATCTCATTCTATCTT	alt_6090_new	0	0	0	0	0	0	0	0	0	0
TATATATACAGCATAT	alt_6090_new	23	47	26	31	41	30	56	20	51	24
CGCAAAATATTTAGGG	alt_6090_new	80	229	123	112	238	113	256	120	297	90
ACGTCGGCGGCGCTCC	ref_6090_new	47	103	59	38	122	62	104	34	126	47
TTAGAGGGTCTTTATG	alt_6090_new	16	47	13	17	40	22	32	30	43	17
CCGCATCCGTGTTAAC	alt_6090_new	3	16	0	1	18	2	13	0	13	1
CAGTTCTTACGCACAG	alt_6090_new	22	64	28	15	65	15	77	20	76	20
CCATTATCACTTGTGA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
ATGAGTCAGTGCCCCG	alt_6090_new	0	0	0	0	0	0	0	0	0	0
AGATGGCCTTTTCTTT	alt_6090_new	15	27	26	22	34	14	31	15	38	14
TTTTACCTCGCATCGA	alt_6090_new	1	3	0	0	0	0	0	0	1	1
GTATCTTCCCCTGAAC	alt_6090_new	0	0	0	0	0	0	0	0	0	0
TCCGGGGTATTCTCAA	alt_6090_new	20	50	29	12	49	18	52	17	52	17
TGTATCGTTAAGCTTC	ref_6090_new	140	235	146	153	259	94	263	110	251	113
ACCATATTACTAAACC	alt_6090_new	10	18	13	9	18	5	27	9	37	7
CCCGACTGTGCAATAC	alt_6090_new	4	8	4	4	12	5	5	4	5	0
TAGCATTATGGCCTTT	alt_6090_new	40	39	25	31	55	20	60	23	41	17
CGGTTACGCTTATCAG	alt_6090_new	1	0	0	1	0	0	3	0	1	1
TCTTGAAATTTGACTT	alt_6090_new	0	0	0	0	0	0	0	0	0	0
AGATATATTGCGATAG	alt_6090_new	3	11	4	2	6	7	7	3	8	6
GCGTATATGCTGGGAG	alt_6090_new	22	47	30	18	44	14	40	24	42	28
CGGGTACACGATAAAC	alt_6090_new	28	54	24	20	59	36	80	21	57	25
TCGAACGTTCTGCTCG	alt_6090_new	21	54	17	19	67	19	59	24	62	21
GGGTTCAATGTCAAGT	alt_6090_new	37	87	61	43	87	40	102	29	108	48
TGGTGAGCGCGTAGCT	alt_6090_new	12	21	7	12	27	8	25	7	34	11
GGTTTGTGAAAAGTAG	alt_6090_new	14	24	14	13	37	8	41	13	28	11
GGGGGCACAACGTCTG	alt_6090_new	0	0	0	0	0	0	0	0	0	0
AGTGCCTGTACCGCGT	alt_6090_new	0	0	0	0	0	0	0	0	0	0
GCTCTAACGTGAACGT	alt_6090_new	15	37	28	20	44	23	46	14	54	13
TCTTAGGTGTACCGGT	alt_6090_new	20	30	22	15	30	15	31	17	21	10
GTCCCTTCATGGTTGT	alt_6090_new	0	0	0	0	0	0	0	0	0	0
CGTACAGGAATTATTG	alt_6090_new	0	0	0	0	0	0	0	0	0	0
CTGGGTTATCCATTTT	alt_6090_new	8	12	7	8	17	9	17	10	18	14
ATGCCGTTCCTTTGTT	alt_6090_new	7	20	9	9	14	9	19	14	14	11
GAATTATATGACCTGA	alt_6090_new	0	0	0	0	0	0	0	0	0	0
TTGTTACTTGGTCCTC	alt_6090_new	23	32	13	23	39	21	35	13	35	9
CGTTTGGCGCGCCACT	alt_6090_new	46	60	43	42	66	42	81	35	76	32
GCCAGCGTGCGAATCC	alt_6090_new	2	20	4	4	25	2	16	2	20	1
CTAAGACACTCGACTT	alt_6090_new	11	38	17	17	33	8	44	5	35	11
TAAACTTTTTACGGAA	alt_6090_new	0	0	0	0	0	0	0	0	0	0
GTATAGTATTAAGTGG	alt_6090_new	6	1	3	4	3	1	6	1	10	2
TCAATCAATGGGGCGC	alt_6090_new	4	9	3	2	9	6	8	2	19	6
TTCCGGCCGGACAAGA	alt_6090_new	17	40	12	18	38	7	29	18	42	16
GTTTGAGGGCTTAGGT	alt_6090_new	2	12	7	5	14	6	9	4	12	3
GAGTACGTCCTCGCCT	alt_6090_new	0	4	3	2	5	1	6	1	2	0
TTAATCCACACGTATC	alt_6090_new	0	0	0	0	0	0	0	0	0	0
ATCTGGGCCCTGTTAC	alt_6090_new	80	172	116	105	208	87	191	102	212	83
ATAGTTTAATTATTGT	alt_6090_new	69	143	72	67	127	72	124	50	133	58
GGCCTAGGGTTGTACC	ref_6090_new	26	76	38	24	64	24	81	24	97	38
TAATTCTTGGTCGTCC	alt_6090_new	13	6	13	5	1	5	1	8	5	7
GTTATACTTTAAATTG	alt_6090_new	44	96	50	32	112	41	113	42	103	32
AACGCCCTGGACCGTA	alt_6090_new	20	46	32	37	57	24	69	25	53	20
TGAGGCCACAAGTCAC	alt_6090_new	8	21	12	6	29	13	27	12	22	17
GCCGTACCCCCTGGGC	alt_6090_new	55	142	78	79	147	65	171	61	191	45
TGTGTCAATGGTTCCT	alt_6090_new	17	32	8	16	28	9	25	15	30	8
AACTCTAATTCGTAAA	alt_6090_new	21	55	36	15	59	19	53	16	50	22
GGGAGCTCGCGTTGTT	alt_6090_new	109	159	112	92	184	93	170	69	170	73
TAAGCCATGCTCATCG	alt_6090_new	0	0	0	0	0	0	0	0	0	0
CGTGCAATCTAAATGT	alt_6090_new	4	7	5	5	8	2	6	7	5	5
CGAGTGTTTCCCGGCT	alt_6090_new	3	5	4	6	10	8	7	3	13	8
GAGAAATGTTTGTAAT	alt_6090_new	43	88	41	29	75	28	81	33	93	37
GAGTACTACCTGTTAT	alt_6090_new	2	9	1	4	3	1	7	1	7	3
GGTCACATCGTAGTAT	alt_6090_new	0	0	0	0	0	0	0	0	0	0
CCATCGCTATGCCACC	alt_6090_new	9	47	16	16	27	8	41	12	40	10
GTAAGTCAATAGTGGG	alt_6090_new	22	48	28	11	32	17	35	16	49	18
TAGTGGAAAGCGGCCT	alt_6090_new	19	14	16	12	33	16	25	9	29	14
CGTTTAATACTTGCAT	alt_6090_new	0	0	0	0	0	0	0	0	0	0
GGGGTTATTGAGTGGT	alt_6090_new	0	1	2	0	5	0	3	1	3	0
TGACTTAGATTCAGTC	alt_6090_new	15	25	8	12	29	10	26	11	25	7
CTTCTCAGTTAAAAGT	alt_6090_new	36	69	25	14	47	19	66	22	64	20
GGCGTTTCACACTATT	alt_6090_new	9	21	11	5	35	7	20	9	17	9
TGGTGTCTTTTGTCTT	alt_6090_new	11	19	23	11	18	17	25	25	29	13
TGGCACGTAACCGCGG	alt_6090_new	18	32	11	10	34	12	44	9	43	16
TACTGTTTCCATACCC	alt_6090_new	11	24	11	5	12	8	23	6	32	11
TGTTGGCACATTACGC	ref_2031_RC	17	10	17	14	13	6	16	9	16	13
AACGGCTGCTTCCGTA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TATTTAGTTCAGAATC	ref_2031_RC	1	3	2	3	7	3	6	2	4	1
TAACAGGGATCAAGGT	ref_2031_RC	6	11	7	5	13	2	3	5	8	2
CCGTCGTTATTATCCC	ref_2031_RC	1	16	0	2	14	1	18	0	10	0
CTCGGGACATTATTCT	ref_2031_RC	3	5	2	0	8	0	4	1	3	1
CGCTTATCGCCGTGCC	ref_2031_RC	4	3	4	3	3	7	3	0	3	1
TCCTCCGTTTGGGATG	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
ATCCAACTGCCTGGTT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GTTACTTATGAGTATA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
ACTTATTCACCGAACT	ref_2031_RC	30	34	22	17	18	21	32	16	35	22
TTAACACTGCCTTAGC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TCTTATGCTATCAGGC	ref_2031_RC	135	206	188	148	202	140	236	150	234	149
TAAAACCGTTTCCCTC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CCCTTCGGTATGCAGT	ref_2031_RC	36	41	55	34	57	40	39	29	51	30
TTGGAAGCAATCATGA	ref_2031_RC	16	21	25	23	22	21	21	22	24	15
AGCCCCCCGGAAGTTT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CTTAATTGAGGTAAAT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
ACCCCCTACATGGATG	ref_2031_RC	8	15	10	7	12	7	12	5	9	6
TCTATGCGACTCACGT	ref_2031_RC	38	31	36	28	55	23	38	33	46	20
GGTGGTCCTAAAGTTT	ref_2031_RC	66	77	92	73	94	78	143	74	121	61
TTTTTATTCGCTGAGA	ref_2031_RC	52	71	43	56	62	44	76	51	78	45
TGGGGCCTGTCGTTTA	ref_2031_RC	2	7	7	3	6	4	13	5	12	6
AACGCCTCGGGAGCCC	ref_2031_RC	34	34	29	35	37	25	41	41	43	23
ATGCCATATAAGATGA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
AAACTTCAGTTATATT	ref_2031_RC	18	37	32	26	30	24	40	19	47	17
GTAGTTTTCGTCGGAC	ref_2031_RC	20	24	24	20	26	18	17	16	25	14
ATGCACACTCCGTTTT	ref_2031_RC	0	7	2	1	5	2	11	0	7	0
CTGCTGTGATACCAGT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
AATGTCGCGCTTACTG	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GTTTTCAGATATCGAG	ref_2031_RC	74	91	104	74	87	50	97	47	82	54
CTTTTAGGTATCTGCA	ref_2031_RC	27	46	38	24	47	26	42	41	42	28
GTAGACGAAGAACTTA	ref_2031_RC	15	30	17	23	25	12	20	19	23	17
CGCTAGTGGCTTGCGG	ref_2031_RC	0	2	5	4	2	5	5	11	4	3
AGCTCATGCTCTACAT	ref_2031_RC	2	5	1	6	9	3	3	5	4	2
GCTTGTCTATTGTTGA	ref_2031_RC	11	7	8	6	11	6	6	1	8	8
TTTTTAGTTAGCCGCA	ref_2031_RC	39	44	35	28	31	23	52	36	45	28
TACTTTCTAGCAGACC	ref_2031_RC	16	22	18	16	19	10	18	8	17	7
CATATCACTCCAATGG	ref_2031_RC	20	15	6	13	29	14	25	12	19	9
GTGAATGGTGTGGGGT	ref_2031_RC	5	3	5	2	1	5	1	3	3	3
TATCGGCCCGGTATCA	ref_2031_RC	26	35	40	30	32	28	28	27	43	22
TCATTGCACTATGCCG	ref_2031_RC	34	62	46	44	58	41	86	35	67	43
AAGTTGATTCTGCTTC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
AGATTCGTAGCGTGTA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TGGGATTGCATTTTGG	ref_2031_RC	15	10	15	12	19	8	14	10	12	8
GCTCTTGGGGCGGTTT	ref_2031_RC	189	242	279	185	231	181	272	213	232	174
CCTTGTAGGATTAGAA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TAAAAGCATTCAATGG	ref_2031_RC	1	9	6	3	7	5	6	6	7	5
CTATTGGGAACGGGCG	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TTCTCGCTATCGGACT	ref_2031_RC	0	0	1	2	1	0	2	4	2	0
TCAAGTAGGGATACCT	ref_2031_RC	20	20	14	22	22	25	34	22	28	23
CTTTGGATACCACTGG	ref_2031_RC	32	38	41	25	66	35	51	32	66	30
TACTACTCCTTTTATG	ref_2031_RC	18	126	12	18	116	14	115	14	117	9
TCAGAGTGATCTCTCA	ref_2031_RC	36	56	50	31	49	28	56	28	55	31
TCGTTGCCACTCCTAA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCCGCCATACTC	ref_2031_RC	251	246	319	232	280	226	275	182	297	219
CATCGAGGTCTCGCTT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CGGTAGTTTTTTATCG	ref_2031_RC	12	19	5	18	19	10	14	11	19	9
CATTTGTTGACACTCC	ref_2031_RC	4	16	8	5	9	2	11	1	6	1
GTTTATAGAGGCAGTC	ref_2031_RC	9	7	7	2	8	5	9	4	14	10
TCATTTTACCGGCCAG	ref_2031_RC	30	42	38	41	42	23	43	25	38	46
ATTTGTACGATCGGTT	ref_2031_RC	16	24	32	10	27	14	28	20	23	19
TTCGCCCCATGGAGCC	ref_2031_RC	8	8	10	11	6	5	11	11	10	13
TGCCTGTCGTATCCTG	ref_2031_RC	11	16	9	7	7	8	15	6	14	15
GGGTTATCTAGGTAGC	ref_2031_RC	45	59	66	56	57	55	54	43	41	33
GAACGGATTCCCAAAT	ref_2031_RC	39	30	60	21	45	28	34	27	41	21
TAGCTATTATAATCGC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CCTTCGCACGTAGACT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GATCCACGGTATCCGG	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GTGACAAGGTCCTTCT	ref_2031_RC	7	13	4	5	12	5	6	7	6	6
GAGAGTTTTTTAGCGA	ref_2031_RC	12	24	24	14	20	20	26	16	23	19
ATAGTAGCTCCCACTA	ref_2031_RC	3	9	5	5	11	4	17	3	11	6
GATCAGTGATTTAATC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TTCTCCAACGTGAAGT	ref_2031_RC	6	2	4	1	1	0	1	0	1	0
TTAGTCATAAAGCTTT	ref_2031_RC	59	94	72	60	108	67	95	47	90	57
CTAATAAAATTAGCCC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GATGTTGCGAATCTGT	ref_2031_RC	47	31	20	31	38	31	39	33	50	26
GCCTCTCAATGTGTGC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CCGGTACTTTCAGAAG	ref_2031_RC	0	5	3	0	2	0	6	2	4	0
GAACCTGGGTTTAATA	ref_2031_RC	13	22	24	20	33	13	26	12	22	12
GTTTTCCTTAGTGCTT	ref_2031_RC	8	12	11	8	10	9	18	4	14	5
TACTCAATCTGGCTTT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CGTCAACAGATATTCG	ref_2031_RC	16	42	13	16	49	15	63	16	51	14
ATAGTCCTTGCTCGTA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CATTGTGGTTTTCTAA	ref_2031_RC	16	21	32	21	22	14	17	17	32	15
TGCCTCTACACAGTTA	ref_2031_RC	17	25	22	16	28	12	38	19	19	21
ATTAACAAAGAATGGG	ref_2031_RC	48	50	58	46	37	45	56	37	56	42
CTGGCAATATGGGGCT	ref_2031_RC	15	18	24	17	18	15	31	15	27	15
CATCTGTTTCCTGTCC	ref_2031_RC	1	1	3	3	2	3	3	1	1	1
ATTTCGTAGAGGGGTC	ref_2031_RC	23	22	29	23	22	22	18	15	32	28
CGAAGTGCATCATCTT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TCAGCCCGAACCACAG	ref_2031_RC	22	32	22	49	30	28	39	24	41	27
ATGCTATATGCTACTG	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
ACGTGTGCCGTCCAGC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TGAACTTGTTATCACT	ref_2031_RC	9	9	4	2	9	4	5	3	12	2
TGCTGAGGCCCATGGA	ref_2031_RC	77	67	94	82	77	71	86	65	81	73
GAATTGATTTTACTCT	ref_2031_RC	12	22	20	12	35	12	20	16	20	10
GCGTTCGTTCTCAGCT	ref_2031_RC	27	32	20	38	46	25	45	30	37	31
AGTAATAAGCCATCAT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CATCCTCCCGCTTTGT	ref_2031_RC	9	16	5	15	26	14	21	9	27	12
CCTAGGAGGGCGGTAA	ref_2031_RC	4	2	5	3	10	1	4	1	4	5
TGGAAGATCGCTGGAG	ref_2031_RC	31	35	32	32	38	24	40	32	35	17
TATTTCTAGACACAAC	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GGTATATTCTGTTCAC	ref_2031_RC	19	31	24	16	23	12	19	21	31	18
CTGTTGCATAATCCAA	ref_2031_RC	43	75	62	54	72	43	82	47	85	50
TGAAGGTAGACTTATA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CCGCGAACACGTAAAG	ref_2031_RC	7	14	7	5	21	3	14	5	11	2
GCAGCCCAGTCTACAC	ref_2031_RC	2	4	3	0	2	2	1	1	1	3
GTATAAAAAATATTTT	ref_2031_RC	17	23	29	26	30	26	29	18	30	24
TGTCTTTTGCAGTACT	ref_2031_RC	10	11	15	11	19	0	19	14	16	2
CCCTCGTCTGCGGATA	ref_2031_RC	4	8	4	9	9	1	25	5	8	5
GCTTCCCCGAGCATTC	ref_2031_RC	17	28	15	19	28	18	30	23	23	10
GTAGGTGCTTCTAGGG	ref_2031_RC	18	11	13	20	17	8	17	9	18	6
AAGTCGATCTGACAGG	ref_2031_RC	0	7	5	5	4	4	1	1	5	4
CCAAGTACATTTTCCT	ref_2031_RC	5	8	5	1	5	3	3	3	5	2
ATCCGCCCACACGTAG	ref_2031_RC	61	66	60	57	63	53	90	60	78	47
AGGCCCAATGTATAGG	ref_2031_RC	3	11	6	13	13	2	13	3	14	4
GATTTTTAATGTAACA	ref_2031_RC	17	27	26	17	23	25	14	18	27	18
CGCCGTTAGCTTTTAG	ref_2031_RC	14	21	10	10	17	13	15	7	9	13
ACTCTGACACGACTGT	ref_2031_RC	26	30	29	13	22	17	51	17	39	10
TGGATCGGTCTACAAG	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
ATACATGGTCCTCTTA	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
CCGCTGGCTGGGCCGT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TTCAGGTGCCTCTGGT	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
TAACAGCTGAAGTGCA	ref_2031_RC	13	20	17	16	18	15	12	15	20	15
TCTATTCTTAATGCTA	ref_2031_RC	11	18	20	23	11	6	17	14	24	8
AAGGCGCCAACGTTAG	ref_2031_RC	0	0	0	0	0	0	0	0	0	0
GTGAAACTCCGCTAAT	ref_2031_RC	52	68	60	44	60	44	71	45	58	49
GATTTCTCGTTTGAGG	ref_2031_RC	21	30	21	25	40	21	37	15	33	11
GTCTCCCGACTTCATT	ref_2031_RC	43	86	77	84	87	66	110	57	85	46
CTTCGTTGCTTCCCTC	ref_2031_RC	17	10	11	17	14	12	14	7	10	9
GTGGAAAGTGGCCGTT	ref_2031_RC	36	64	51	48	49	40	37	39	48	26
ACTACATACGTCCCTA	ref_2031_RC	4	11	1	10	13	3	9	6	14	5
AAGTTAGCAATCCCTC	alt_4235_missing	24	46	22	17	38	22	38	20	32	23
CGTAGGGACACCAACG	alt_4235_missing	14	46	35	18	43	22	40	29	41	19
GTTATTAGCTTTGCGT	alt_4235_missing	0	0	0	0	0	0	0	0	0	0
TAGCCCAAGCCGTCCT	alt_4235_missing	8	5	2	5	13	7	9	6	12	3
TGTTCATCGAGCTGTC	alt_4235_missing	17	25	27	21	31	16	36	19	29	19
AAGGGTTTCTGAGCTC	alt_4235_missing	146	191	151	124	160	168	159	136	203	122
GATAGGTCCTATCTCG	alt_4235_missing	0	0	0	0	0	0	0	0	0	0
TTCGAATTGATTTTAG	alt_4235_missing	31	41	36	34	52	30	51	28	55	28
CGCGTAGACCAATCAT	alt_4235_missing	7	17	4	5	14	9	16	5	22	11
ATTTTTAACCCTAGGC	alt_4235_missing	23	22	24	10	28	16	23	17	39	10
TCCGCAGCCATCGAGT	alt_4235_missing	16	30	15	24	21	9	34	16	26	10
GACCAGTGGGGTGATA	alt_6041_new	12	11	12	13	18	13	16	10	12	7
ATCCCCCTGTAGTGGC	alt_6041_new	129	163	158	117	145	133	203	122	166	101
CGCTTCATGGACGACT	alt_6041_new	68	82	74	69	87	52	131	62	94	66
TCTCCGTCAGTATATT	alt_6041_new	14	46	11	14	53	9	63	6	76	11
AAGTTACACTAATCCT	alt_6041_new	139	187	172	160	177	135	201	110	197	147
ACGGTTGTGCGGCCCT	alt_6041_new	1	3	0	1	2	1	4	1	0	0
GGCGCATAACACTCCA	alt_6041_new	71	118	92	76	150	65	149	89	152	57
CTTGTTTCCTGTATCT	alt_6041_new	13	7	12	14	17	12	25	9	9	7
CGGAATTCGATTCTCG	alt_6041_new	27	18	28	16	33	19	40	21	27	16
GCGTAAGTCACTAGAG	alt_6041_new	2	4	1	4	7	4	6	5	13	4
CATTCAGTCACCTGGA	alt_6041_new	21	32	25	20	36	16	52	20	29	15
CGAGCGACGACTTTTC	alt_6041_new	37	26	29	25	29	24	33	19	31	21
CTTCATCTTGATTGTA	alt_6041_new	5	4	6	2	5	5	2	2	2	7
TACCATTCTAAGTTGA	alt_6041_new	0	0	0	0	0	0	0	0	0	0
TGATACCCTCAGGTTC	alt_6041_new	23	36	24	26	37	18	53	22	44	20
TGGATTTATATCTCCC	alt_6041_new	26	36	26	33	46	34	34	25	40	23
AGGCACTATGCGAGCG	alt_6041_new	0	0	0	0	0	0	0	0	0	0
GGCGCTCGACCACCAT	alt_6041_new	0	0	0	0	0	0	0	0	0	0
GATTTGCTGGCCATCT	alt_6041_new	119	219	153	130	198	137	201	124	171	140
CTGTTCCCCTTTTGTT	alt_6041_new	43	46	41	39	62	37	64	32	47	34
TCCCTGAGCTTCGTCC	ref_6041_new	21	38	31	34	42	31	57	13	34	19
GATAAATTCAAATCTT	alt_6041_new	0	0	0	0	0	0	0	0	0	0
TATGTACCTCGTCTCA	alt_6041_new	11	35	13	20	29	17	30	23	38	18
CTACCCTCGACCCCTC	alt_6041_new	24	29	35	18	36	27	30	17	39	10
GAACGGCCCAGTCGCA	alt_6041_new	0	0	0	0	0	0	0	0	0	0
AAAATGGCGGGGAAGG	alt_6041_new	78	49	85	83	63	82	52	72	69	56
AATCCTCAGTCGTGAA	alt_6041_new	0	0	0	0	0	0	0	0	0	0
CAAGTGGGGACTTCTA	alt_6041_new	37	53	36	35	56	46	53	41	65	43
CCTTAGTCCAGCTTCT	alt_6041_new	13	20	11	7	33	9	20	17	34	12
TGATACTGTTTAGAAT	alt_6041_new	0	0	0	0	0	0	0	0	0	0
TCGAATCGGAAGAAGT	alt_6041_new	10	10	10	7	14	8	13	9	15	6
GTTGTCGCAACGGCTA	alt_6041_new	51	69	66	56	80	41	64	53	79	48
GGTCAATACCATTTCC	alt_6041_new	6	8	5	14	10	7	12	10	12	6
TAGTATTTCCTGAATT	alt_6041_new	14	23	19	17	13	16	34	17	21	17
TTATTGTGGATAGGCG	alt_6041_new	45	63	75	48	47	62	97	41	88	47
TCAGCCTTCTTTTTGT	alt_6041_new	24	31	16	12	24	20	36	12	34	9
GCTCCTAAACTTTGTG	alt_6041_new	60	100	80	54	106	48	130	47	119	56
TATATCGCTTGCCTAT	alt_6041_new	37	41	36	33	45	31	39	24	45	22
CTAGATCATGATTTGG	alt_6041_new	1	2	1	2	1	1	3	2	1	2
AACACTTTCGGTTTGT	alt_6041_new	7	15	11	10	9	8	9	11	8	7
GTCAATGTAACCAGTA	ref_6041_new	9	22	9	10	21	9	25	11	12	7
CCAACCACACCTGTAT	alt_6041_new	0	0	0	0	0	0	0	0	0	0
TGTAACGGCCTTAAAG	alt_6041_new	22	27	26	10	18	12	28	21	32	23
GAGTCTCATTGTTATC	alt_6041_new	38	54	37	35	46	45	79	38	58	27
CTGCCCTCCCTCCTTT	alt_6041_new	14	33	34	13	22	14	30	20	27	7
TCACCATTCGCCCCGG	alt_6041_new	10	22	18	8	12	8	28	19	17	11
TAAGATTTCCAAATCT	alt_6041_new	29	33	34	24	50	33	40	13	35	28
TTGATTATGGCTATTT	alt_6041_new	27	46	61	27	40	51	43	28	45	20
TGGAGATCGCCTCCGT	alt_6041_new	10	12	4	7	5	6	10	4	14	4
GAAAGTAGGGTCCAAT	alt_6041_new	5	9	7	9	10	6	8	1	8	2
GAGTATAGTTAGTAAC	alt_6041_new	12	13	14	15	27	15	22	10	26	19
GGTTGCGAGTCCTCGG	alt_6041_new	43	76	57	51	73	50	69	44	61	40
GCCCGGATAATTCTAC	alt_6041_new	86	107	96	88	122	67	124	68	141	60
CGGCGTGATCGTGTGG	alt_6041_new	23	21	30	32	26	18	38	19	29	11
GGATTTTATAAATATG	alt_6041_new	0	0	0	0	0	0	0	0	0	0
GGTCGCCCGAGGTTAG	alt_6041_new	14	21	16	14	18	17	21	17	15	15
ATTTGTGATTCCTGGA	alt_6041_new	7	10	10	5	13	9	11	6	6	9
CCACGATATCTATGCT	alt_6041_new	7	17	4	4	26	4	14	6	27	4
TACGGCCATTCTACAC	alt_6041_new	5	19	7	4	6	7	12	6	10	3
TTTTATCTTCCATTTG	alt_6041_new	45	58	66	62	65	52	75	50	100	48
CAGCGGCACGTTCGCT	alt_6041_new	3	7	1	8	10	13	3	5	8	4
AGCTTGTCTTCGGAAT	alt_6041_new	50	56	38	37	52	40	75	36	56	36
GCCAGCGTAGGTTATG	alt_6041_new	6	25	12	8	20	7	32	10	30	10
TTATGTATGCCCTATC	alt_6041_new	116	180	135	122	172	102	169	105	151	87
TACTGCGCAACCAACA	alt_6041_new	53	68	39	51	57	31	51	38	72	44
TTTGGGTATTGGATCC	alt_6041_new	0	0	0	0	0	0	0	0	0	0
CATTAGTGATCCCCCC	alt_6041_new	0	0	0	0	0	0	0	0	0	0
TTACCCATTTCGATTT	alt_6041_new	46	41	50	30	34	14	45	27	33	19
TTGTCGTGAGTATAAA	alt_6041_new	22	34	18	25	32	17	19	28	29	15
CTAATTAATGGTCTAG	alt_6041_new	0	0	0	0	0	0	0	0	0	0
ACCAATAGTAAGTCCT	alt_6041_new	8	15	13	10	18	10	19	12	15	6
TGCAATTACGTTGGGC	alt_6041_new	0	0	0	0	0	0	0	0	0	0
GAGCCACCATTCACGT	alt_6041_new	9	34	17	13	20	12	21	13	22	8
TCCAATTATTCCGGAT	alt_6041_new	29	42	42	48	32	33	49	38	48	27
AACTACCCTGACCCGC	alt_6041_new	0	0	0	0	0	0	0	0	0	0
TTCCTGGTAATATGTT	alt_6041_new	53	67	85	53	86	44	99	73	91	48
GGTGAAGATCATGCAA	alt_6041_new	6	3	14	7	6	5	6	8	12	2
CGTGGGCAAGATCGGC	alt_6041_new	22	23	22	28	19	22	33	11	29	21
AGTCCGCCTTTACGGA	alt_6041_new	10	7	10	3	7	7	2	2	6	7
CATAGCATTGCTAAAC	alt_6041_new	19	14	21	16	26	11	17	20	17	12
GTTCTGAACATAGGCA	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TGTACTTCGTGAGGTA	alt_6041_new	0	0	0	0	0	0	0	0	0	0
GCATTGGACGTTTTGA	alt_6041_new	3	4	13	4	1	3	4	3	7	2
ATGTTGTGGCCCCATT	alt_6041_new	91	95	92	70	115	80	112	80	115	81
CAGTGATTGAGTACAT	alt_6041_new	14	18	10	14	22	12	26	11	24	12
TCCGGGTGGAGTCAGT	alt_6041_new	185	245	224	193	247	156	237	174	279	161
AATAAGTAAGTTCATG	ref_6041_new	50	101	65	64	103	57	103	64	107	61
CTCTATCGACCGATGC	alt_6041_new	22	38	4	15	65	11	50	11	82	9
GTTGGTACGCAGTATT	alt_6041_new	8	15	14	13	10	6	9	4	15	6
TCCAGGGTTATTTCCG	alt_6041_new	25	54	18	31	38	15	25	24	27	19
TGATTTTCTTCGGGGG	alt_6041_new	0	0	0	0	0	0	0	0	0	0
GATATGTCAGTTGTGG	alt_6041_new	0	0	0	0	0	0	0	0	0	0
GTGGATGTTTACCGGA	alt_6041_new	45	57	46	39	80	32	65	46	81	39
CCTTCTTCCCCAACCT	alt_850_fdr	44	47	45	52	41	36	48	23	35	25
CATATTCGCACGTGGA	alt_850_fdr	29	27	27	28	33	23	29	24	28	19
CGGCGGGCTCGGCCGT	ref_850_fdr	23	31	31	28	29	24	27	18	33	24
CCAAAGTGATATGTAT	alt_850_fdr	0	1	2	2	2	2	3	2	2	2
ATCCGAATCTCCACCG	alt_850_fdr	17	17	18	10	26	13	21	22	23	20
TAGTCTGTGGCTCCTC	alt_850_fdr	5	8	5	2	8	1	8	4	9	3
GACGGATGTAGAGCTA	alt_850_fdr	17	19	20	23	20	24	25	14	17	15
GGACCAGTGCGGTGGT	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
CTATTTGAATTCGGCG	alt_850_fdr	6	5	5	8	7	7	4	8	9	4
TCACTGGATTCTCTAT	alt_850_fdr	334	360	377	318	396	306	419	343	384	308
GGCTGGTGGTCACAGG	alt_850_fdr	17	12	15	20	22	23	18	19	23	14
GCGCTACGTTAGAATT	alt_850_fdr	4	8	12	8	5	18	6	4	8	10
CCAGCCGGAAATGCCT	alt_850_fdr	1	4	0	0	3	0	12	1	2	0
AAGATCCTCCTTGGCT	alt_850_fdr	6	11	9	3	14	8	19	3	14	2
TACTATCGAATATTTC	alt_850_fdr	33	41	32	28	49	35	42	40	48	31
ACTGTCTTTTGTTCTA	alt_850_fdr	40	43	54	39	56	31	46	43	52	43
TAGTCCAAGAGTGCAA	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TTTACAAATCCGGCGC	alt_850_fdr	44	31	55	41	50	56	36	45	55	46
GCTCTGGACGGTTGTC	alt_850_fdr	132	156	154	123	186	111	168	106	139	108
CATGTGTACGTGTATA	alt_850_fdr	84	83	76	72	76	61	91	64	80	58
CTGAATGCTTCTGTGC	alt_850_fdr	23	18	15	17	22	17	18	22	28	25
TACGAAATTCTCCGGA	alt_850_fdr	45	40	44	54	54	42	43	55	52	33
ATTAAGCCGCTTTGGG	alt_850_fdr	69	84	79	82	95	80	114	65	94	74
GAGAATCCCCGGGTGG	alt_850_fdr	45	45	66	28	32	29	43	40	46	32
GATAGACGGGCCGTTC	alt_850_fdr	74	65	100	77	109	73	98	73	94	74
CACAGTAGCTATACGG	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAGTTATAAGCTT	alt_850_fdr	94	79	81	72	88	64	92	69	113	55
CTAATCCTTCCGTCTA	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
AGCATTGATGGTAGTA	alt_850_fdr	20	20	22	15	33	27	22	19	35	15
ATAGATTTTTGACCCT	alt_850_fdr	10	14	13	5	11	7	9	11	18	7
ACGCCTGAAACTCATG	alt_850_fdr	2	7	1	1	6	3	1	2	10	0
GTATTCTACCGTTCTA	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGGTGTTCCATTT	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTTGAAACCGATA	alt_850_fdr	16	19	15	12	13	17	20	16	29	21
TGGGCCCATGTCGCGG	alt_850_fdr	82	93	105	99	78	100	102	83	88	100
TGAGCATCAGTATCAG	alt_850_fdr	64	85	71	76	68	57	68	46	57	47
GGGGTTTCATACGATT	alt_850_fdr	7	6	7	13	7	2	10	10	9	2
ATATGGTCGGCGCTCT	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGCTCGTTCTCAT	alt_850_fdr	7	13	7	12	12	10	14	7	3	10
TATGTTCTGGTATCAT	alt_850_fdr	92	94	104	70	110	64	93	82	106	64
TCTTCCGTGATTTACC	alt_850_fdr	25	28	29	27	30	25	35	31	48	23
CATTCATTCGTGCGCT	alt_850_fdr	32	48	51	37	62	25	45	42	56	19
AGATCACTACGCCATT	alt_850_fdr	40	61	58	49	51	51	52	41	58	46
TCAGGTCTTATTGTGT	alt_850_fdr	14	17	22	18	18	6	17	8	16	4
CCTTATGCGCTCATAT	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCTACGAGCATAT	alt_850_fdr	20	32	29	34	24	20	32	21	29	19
ACTCTATCCTTGTCTC	alt_850_fdr	37	38	51	52	31	30	47	44	39	36
TTGCGCGAAAAAGTTT	alt_850_fdr	25	19	30	38	22	32	29	22	38	22
GATGGAACGGGGGTTG	alt_850_fdr	82	94	117	80	67	69	98	87	107	56
CGTACTTGCTTCACTG	alt_850_fdr	17	34	18	27	30	25	30	25	25	16
ATCCATTTAACGAGCT	alt_850_fdr	41	47	48	40	43	57	53	39	42	59
GCGTAACTTCGCAGTC	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
GAGATCCATGGTCTGA	alt_850_fdr	100	107	149	112	132	115	134	100	131	101
AAATACGCGAAGTTGT	alt_850_fdr	15	20	25	20	27	12	24	13	29	8
GCTCCAGGCTCACGAT	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGTTGCAAAGGGG	alt_850_fdr	13	14	25	19	17	14	18	15	23	17
CACGGCTACTGATCAG	alt_850_fdr	13	33	17	22	27	20	33	15	38	14
TAACGTTCGGCTTTTG	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TTATGAGCCTTGTGGT	alt_850_fdr	199	222	234	207	220	184	218	192	226	147
CTTGTTAGATTACGTA	alt_850_fdr	144	147	181	142	162	131	188	105	186	143
TTTTGAAAGCTCGTCG	alt_850_fdr	3	5	4	4	7	3	2	9	6	4
CCACGTTGAATCCATG	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGCTGGCCCGTCC	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
GGACTGAGGAGAGAAG	alt_850_fdr	72	67	94	84	57	69	92	56	99	58
TAAACCCCGGTTTCGT	alt_850_fdr	17	14	17	22	27	13	16	13	19	19
GATTTTAATGGTTTGC	alt_850_fdr	51	76	73	48	61	53	73	47	71	34
GGGGCACCATTACACA	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
CTGCATGCTGTGTTAC	alt_850_fdr	20	30	30	19	34	23	29	20	35	17
CGAGTATCTTTATGGG	alt_850_fdr	16	18	22	10	21	5	12	12	20	8
GTTGGCCGTCAAAATA	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TTCATGAGCATCTCTT	alt_850_fdr	25	52	25	18	33	18	40	14	40	18
TGATACCTCCCGCCCT	alt_850_fdr	7	10	5	5	8	13	8	3	10	4
ATTTGTTTACTTTGCA	alt_850_fdr	194	195	244	250	206	232	162	227	198	236
TATCGATATCCATCAA	alt_850_fdr	8	13	10	7	13	7	13	9	11	12
TCACTGGATTCACTAT	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
AGGACCGCCATCAGCA	alt_850_fdr	62	61	63	49	52	44	81	57	67	59
AGGGGGCATCCTTGAT	alt_850_fdr	21	23	19	21	21	25	27	33	20	18
AAAAGAGAAGATGGAT	alt_850_fdr	5	1	6	0	7	5	4	1	3	3
ATCTCTGGTACGCCGC	alt_850_fdr	30	27	35	29	36	20	22	21	19	19
TTAATAGATAAACGAT	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
GGAGATCATGGACGGG	alt_850_fdr	1	0	4	4	1	0	0	2	1	0
TCCTAGATCTAGATTG	alt_850_fdr	15	19	16	20	21	22	23	12	19	10
AGTTCTACTTTTTTGG	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTCTGGCTCTTCT	alt_850_fdr	1	3	1	1	2	2	1	3	1	1
TCCTTTTGTCATTGCT	alt_850_fdr	52	57	60	55	52	43	67	41	58	48
CTACTCGTCCAGATTG	alt_850_fdr	40	68	57	41	51	42	57	40	69	39
AATGTCCGAGACACTC	alt_850_fdr	1	2	3	0	7	3	4	1	0	4
TTCTCCTACAGCTGGC	alt_850_fdr	27	31	33	35	28	23	27	16	30	26
TCAGCATGTAATAGTG	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGTTTTCAACAAA	alt_850_fdr	0	0	0	0	0	0	0	0	0	0
TTCGATTTTAGTCAGT	alt_850_fdr	57	67	65	39	74	73	64	52	71	52
TAGCAGTATCAATACA	alt_850_fdr	21	16	23	20	20	11	21	6	16	15
GTTCCCGAAAAAGATT	ref_2112_fdr	9	8	8	13	7	6	10	6	14	6
CAATACATTGGTTTCA	ref_2112_fdr	25	9	25	15	9	19	10	14	6	19
GATTTTTGATCCACAA	ref_2112_fdr	77	37	76	50	38	70	33	60	28	76
ATTGTCTATCATATTA	ref_2112_fdr	35	26	57	39	35	45	34	40	35	30
CTTACTGGACTATAGG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTAACTATGCGCG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTCTTCACCTAG	ref_2112_fdr	212	140	292	183	123	188	105	192	153	199
GTGTCAAACACACTGG	ref_2112_fdr	38	15	34	22	21	37	21	23	18	37
TAAACTGGACTTGCGT	alt_2112_fdr	254	135	308	195	115	230	135	213	138	206
AATTTTGACACTAGGC	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
TGTGATCGTTTTCAAG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
GATTTCCAGTGAGCGT	ref_2112_fdr	57	43	60	42	31	48	22	43	30	59
TGCACGAAGTTAAAGG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
CACTTCGCCAATTCGA	ref_2112_fdr	1	1	2	0	2	3	2	0	2	3
TCATATTTTTTTTTCT	ref_2112_fdr	106	30	93	60	59	74	55	76	47	61
CATCAATGGCTGGAAT	ref_2112_fdr	74	48	111	45	35	76	37	40	31	68
ACTTACGTAATTAGGA	ref_2112_fdr	75	44	94	92	45	63	52	68	48	84
TTTGGTTCTAAGGTCG	ref_2112_fdr	189	84	187	148	89	177	82	161	108	149
TTAGGAATGTGCAAAG	ref_2112_fdr	115	55	117	66	62	87	83	101	77	85
GCCCGGGAATAGCTCT	ref_2112_fdr	97	30	95	80	33	73	35	68	48	81
TCTGACCGCAACCGTT	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTATCCCGGTGA	ref_2112_fdr	12	7	14	7	2	7	9	12	6	17
TATAGTTGCGCAATTT	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTAGCCAGGCTCA	ref_2112_fdr	27	12	27	10	13	16	15	14	11	21
GAGAACTATGTTCATC	ref_2112_fdr	71	44	88	57	47	100	44	86	43	63
TTCCGCAATATGTTCC	ref_2112_fdr	160	94	205	160	86	189	99	173	93	141
GGTTTTTCCCTCTGCT	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
AATAGGACCTTTGTGG	ref_2112_fdr	11	9	16	9	14	12	5	13	6	17
AATGGGACAAATCTTC	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
CTAACTCTTATCAATG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
GTTCACTACTGACACC	ref_2112_fdr	109	76	180	93	58	101	72	115	63	95
CCCGTCAGCTCGTAGA	ref_2112_fdr	87	48	82	57	30	67	52	65	40	55
TTACATTCTTAGTCTT	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTTAGCATCCTTC	ref_2112_fdr	421	197	448	325	175	369	178	323	209	345
CACTTACCTGTTTGGC	ref_2112_fdr	12	15	10	8	18	5	15	8	25	11
TAGATCATGAGTGCAC	ref_2112_fdr	89	37	87	54	26	83	29	77	41	56
TAACGGTGTTCTCAAT	ref_2112_fdr	16	5	3	11	5	12	1	4	5	10
CCCTTCGTCCCTCTTA	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTATAGACCACGC	ref_2112_fdr	24	24	55	17	20	40	21	19	18	22
TAAACCCAAGGTAGCC	ref_2112_fdr	12	5	11	10	6	10	3	6	0	7
TGGCGAGACGTGTGGG	ref_2112_fdr	111	55	110	93	43	122	61	87	47	82
TCTGGTCTCTGGAATA	ref_2112_fdr	10	7	19	9	7	8	7	11	4	15
CGTCCACCCATCAACG	ref_2112_fdr	46	27	32	48	20	34	27	44	18	41
GACCTAACTATGCGCG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
TTAAATGCCAGGGAAG	ref_2112_fdr	55	28	60	46	28	34	21	51	30	45
TCTCCTTAACGCGCGG	ref_2112_fdr	44	16	36	26	18	29	21	28	20	30
CCACGACCCCATTTAT	ref_2112_fdr	28	25	37	27	17	29	25	24	38	34
GGCCTAACTATGCGCG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
CGATATGGTTCTCCTA	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTTTTTACGGGTT	ref_2112_fdr	25	9	33	20	14	29	17	28	12	11
TTTGCTTAGGGCAATA	ref_2112_fdr	97	41	99	48	30	68	62	52	45	76
TAGGTCTATTCTAGTA	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
TCATATTTTTTTTTTC	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCAAAATGTGAAA	ref_2112_fdr	6	26	13	10	20	3	22	9	28	8
ACGATAGCCAGGAAGA	ref_2112_fdr	240	143	272	232	152	200	143	198	170	208
TCGACTCGTATTTGCG	ref_2112_fdr	0	0	0	0	0	0	0	0	0	0
TTATGGGACACACCTT	ref_2112_fdr	107	45	92	63	62	92	53	74	58	110
GATGTTCTCTATCCGG	ref_2112_fdr	14	4	8	22	6	11	9	12	3	15
TTGGGGAACTTACATA	ref_2112_fdr	12	6	9	9	4	11	7	9	5	11
ACATCATTCGAACTAA	ref_2112_fdr	36	27	49	20	17	32	20	42	21	36
CACGGAGTCATCGGCG	ref_2112_fdr	120	50	137	95	51	102	56	89	48	86
ACGAAGGATCGGGGCC	alt_5365_fdr	11	6	20	11	10	11	9	9	17	12
GGCGATCTCCATTGGT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTTATTCCACATCACA	alt_5365_fdr	21	15	26	17	13	21	14	9	12	16
CTACAGCTCGCATACC	alt_5365_fdr	238	230	336	291	260	276	282	269	258	239
GCGGTAGTCGTTGTTA	alt_5365_fdr	40	25	51	57	23	48	36	35	19	43
TGCCTTGTCGGCCGGG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGACTTATGGCAG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCCTACCGGAAGCTCC	alt_5365_fdr	11	0	9	4	1	8	4	9	2	8
CTTCACCGATACATAG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCAGGAGTTCTCT	alt_5365_fdr	141	84	164	131	66	129	73	110	74	97
TCGGGAGATGCGAAGC	alt_5365_fdr	30	19	42	31	22	18	11	27	14	26
CGGGCCTAGTGGGATA	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGCGGCCTTTGGT	alt_5365_fdr	34	28	41	38	16	39	24	26	33	39
GAGAGGGTTCTGAATT	alt_5365_fdr	32	24	28	39	19	30	25	22	19	18
AAGTTTGCGTTAAACT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGCAACCCAAGGG	alt_5365_fdr	142	79	141	138	63	131	85	92	74	118
AGCGGACAATTAGCGT	alt_5365_fdr	64	31	76	92	33	49	47	68	26	49
CTTAAGCGTTCTAGAT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTAATGCGTTTTC	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGAAACATGACATATT	alt_5365_fdr	101	64	116	109	53	93	66	86	49	97
GAGTGCTCGCCTAGTA	alt_5365_fdr	54	27	64	52	29	49	39	51	33	50
TAGTAAGAAACCTTTC	alt_5365_fdr	92	53	85	81	50	77	56	78	49	73
TCACAACAAACTTCTC	alt_5365_fdr	25	12	31	25	16	17	18	23	17	27
GGACACTGCTCATAGT	alt_5365_fdr	2	2	10	8	8	6	2	5	3	3
GTACTTCCACGTGCCG	alt_5365_fdr	17	30	21	11	27	27	29	23	23	25
GAGCGTCAGTCGTCTC	alt_5365_fdr	83	52	109	70	51	83	52	77	46	92
CTCACACGACTTTGGT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
TGGAAAACTCCTCATC	alt_5365_fdr	3	1	0	5	4	3	1	0	0	1
GAGGCTTTCATACGGC	alt_5365_fdr	102	58	115	110	65	97	72	95	61	97
CTCGCGTACATATTAG	alt_5365_fdr	26	22	44	28	20	39	33	37	28	22
TAGTCGTGGGCACCGG	alt_5365_fdr	2	4	16	13	7	10	10	16	9	5
CTTCTCTGGTCGAACG	alt_5365_fdr	40	17	38	37	22	31	26	33	20	23
CATTTCACTTGGTTTT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGCACTTATAGCTCCT	alt_5365_fdr	76	48	93	76	50	77	47	87	56	93
GGTCTTGTTCCTCGAC	alt_5365_fdr	63	36	60	65	59	46	53	42	45	63
CGCTTAACCCGATGCC	alt_5365_fdr	36	17	46	33	23	23	35	33	33	31
AGGTAAGGAAGGCAAT	alt_5365_fdr	13	6	16	23	14	30	15	23	10	16
CTCGGGCCAGTCTGCG	ref_5365_fdr	11	11	11	19	26	10	33	14	26	8
GGACGTCTTACGGTGC	alt_5365_fdr	16	17	19	21	4	14	11	15	8	23
CCCTCTCAATTGATTG	alt_5365_fdr	70	44	74	60	49	42	59	45	61	38
TTGCGACTACATTTTG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
TCGAATACGAAAAGAG	alt_5365_fdr	103	70	119	101	63	120	79	92	65	92
TTATTCAAGATCGCTT	alt_5365_fdr	49	35	50	59	34	46	38	45	26	54
CGCCGAGTGTAACTCT	alt_5365_fdr	26	15	35	19	16	18	18	24	21	25
TATGTTGTCACGACTT	alt_5365_fdr	7	4	9	7	4	5	3	6	10	8
AATGCATTTAGTATGT	alt_5365_fdr	4	12	9	9	7	17	17	19	7	11
TATGTGTTGTGGTGGT	alt_5365_fdr	79	80	101	102	61	104	84	97	61	79
TTCTTCCAATCGTCTC	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGTGCTTCTCCTGCGG	alt_5365_fdr	62	30	77	88	41	54	31	49	41	59
TCTTCGGTTACATAAG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTCTCAGTGGCG	alt_5365_fdr	11	14	22	13	12	8	13	11	6	7
GGGGACGGGTCGTTGG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GGGAACGGTCTTAAAT	alt_5365_fdr	26	15	29	28	18	19	18	32	11	25
CGAGCGAATTACTAAC	alt_5365_fdr	10	6	8	9	7	5	5	12	2	11
GTTACATATGCCCTCA	alt_5365_fdr	145	61	184	155	85	132	79	117	74	122
CAGGCGTCGATGCGCA	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGTTCCTACTCTA	alt_5365_fdr	40	31	44	56	28	48	40	41	36	46
CATGGTAAGCCCGCTC	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTTTATTTTGAGT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCGAAAGCAATCGCGG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCGTCGGCGTTTA	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAAAGCAGTTAGT	alt_5365_fdr	89	54	96	84	46	96	31	81	37	76
GCATGATACTATTTTA	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
ATACTTTAAGTTTATG	alt_5365_fdr	189	122	224	186	132	161	139	187	146	171
GACCGTTGATCAAGCC	alt_5365_fdr	3	1	0	0	2	0	0	2	0	1
GTGGTTTAGGATATAG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTCACCGATGTT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTTTTGATCCGGT	alt_5365_fdr	10	6	21	13	7	15	10	9	6	3
CCAAGATAAACTAAAT	alt_5365_fdr	54	31	56	56	28	39	23	53	34	42
AAGGACGGCCATTTTG	alt_5365_fdr	125	54	183	147	50	123	73	128	66	142
CGCCCAATTGTACCCA	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTCCCCGGCAAGT	alt_5365_fdr	8	17	9	15	19	12	22	12	14	7
CAATCACTGTCGAAAT	alt_5365_fdr	7	4	11	7	3	4	4	9	8	9
TATCACCATCGAGAGC	alt_5365_fdr	8	12	8	9	13	4	16	5	11	5
TCGGCCTTTCTCTTAA	alt_5365_fdr	46	48	71	50	42	54	30	48	37	66
CCATTGTTATTGAACT	alt_5365_fdr	25	29	32	24	27	17	31	32	17	30
TCAATCTAATTTAACT	alt_5365_fdr	59	38	107	64	23	73	54	66	53	73
AATCAAACGATCGTCC	alt_5365_fdr	139	73	153	122	61	127	63	102	70	115
TGCCTTGTTCACCTGT	alt_5365_fdr	21	10	36	26	12	22	13	20	22	20
TAAATATCCTCATGGG	alt_5365_fdr	484	241	576	516	233	469	297	485	288	398
TCTCTTCATAACTTGG	alt_5365_fdr	52	33	78	60	37	41	42	48	28	34
GTCGCCTGTTCTCATA	alt_5365_fdr	20	19	37	27	16	25	17	27	14	18
AAACGCGGGCCTGAGT	alt_5365_fdr	27	18	36	44	18	36	20	26	14	31
CTCTGGGGTTGGCCTG	alt_5365_fdr	55	46	67	62	31	61	36	36	45	57
CTCAACCCCTTAATTT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGTTTTCCTACCG	alt_5365_fdr	15	1	13	9	6	12	3	15	4	6
CAGGAGTAGTGGAATC	alt_5365_fdr	87	42	84	87	51	67	82	74	57	78
GAACCGGCTCTATGGT	alt_5365_fdr	19	8	19	9	16	13	11	17	6	10
CCTATGAAGCCTACTT	alt_5365_fdr	19	20	17	16	29	10	14	14	13	11
CCTGAGTGTAACTCCG	alt_5365_fdr	0	0	0	1	0	0	0	0	0	1
TGTGGGTCACTTGGTT	alt_5365_fdr	24	12	24	24	7	15	18	28	16	25
ATACGGATATTACTCA	alt_5365_fdr	43	17	38	33	22	28	21	23	17	35
ACGGACATAGCGAGCG	alt_5365_fdr	33	34	40	23	36	26	31	29	34	17
ATCAGTTCGTTTGGAT	alt_5365_fdr	31	31	41	44	21	39	20	34	30	34
TAAAACCGATACGTGC	alt_5365_fdr	420	220	495	465	299	375	256	385	240	358
GCTGCACTCCTTCTTC	alt_5365_fdr	51	38	61	67	45	40	35	56	41	47
TGCTCTCACATGCCAC	alt_5365_fdr	42	21	46	27	21	32	32	22	19	30
AGTAGCCGCGGTGCGA	alt_5365_fdr	74	35	80	67	47	67	41	64	50	57
GTTGTCTGGGTGAACA	alt_5365_fdr	71	40	96	67	31	70	40	60	40	47
GCTGTGCCTAGACTTG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GACTAACACTGAGACG	alt_5365_fdr	73	41	83	84	47	111	43	77	56	77
ATAACACTCACTGAGG	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GACCGCGCTTCACTAG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
AATCGCCAGGTGATTG	alt_5365_fdr	245	141	303	255	135	222	135	222	121	188
AGACTTCAGATTTATA	alt_5365_fdr	239	114	259	225	134	218	164	213	124	191
GCACTGCCGCCTTGCT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGATCTCAACAGC	alt_5365_fdr	54	33	74	61	41	40	41	47	42	73
ACACGTCCATCGGTCT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCTATAGCCCTCCATT	alt_5365_fdr	77	50	133	95	58	81	68	78	66	78
CGGATTATGCGCGGCC	alt_5365_fdr	137	66	132	140	83	114	76	128	77	115
GACTCAGCTCGAGCCT	alt_5365_fdr	17	8	11	15	12	18	9	15	12	19
AGTTTGTCTTGGACCT	alt_5365_fdr	310	177	394	339	183	352	214	349	197	329
AAACCGTGAGTTAATG	alt_5365_fdr	30	17	51	30	20	26	20	25	15	18
CCTAGGGTACCTAATT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GGATCAGCGTCGCCTA	alt_5365_fdr	125	67	120	93	92	94	64	100	70	98
TTGAACCATTATGGGC	alt_5365_fdr	7	2	17	9	1	12	15	7	7	10
AACTGGTTTGCTTTGA	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
CAACTAAGAAATCTTG	alt_5365_fdr	60	32	70	68	43	37	37	60	45	47
CTACGTCCTTAAATCG	alt_5365_fdr	56	27	57	49	33	39	34	43	23	29
CTGTGACCACTACTCT	alt_5365_fdr	84	72	122	109	57	85	40	85	61	86
CAACTCAGAATAGTGT	alt_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCTGATATCATTA	alt_5365_fdr	44	31	57	68	27	50	27	36	45	46
GCGGCAGGTGTAGTGT	alt_5365_fdr	37	29	62	37	29	34	36	47	48	48
TACATGCTACCGTCAA	alt_5365_fdr	71	50	101	83	48	79	64	87	40	79
TGTTGTGTCCTCAGTC	alt_5365_fdr	184	111	199	204	116	177	111	146	121	168
TTTGCGGTACCCTGGA	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTCCGCGAAGGTG	alt_5365_fdr	12	6	14	23	7	15	11	18	12	18
TACACGTATGTAATGG	ref_5829_new	4	5	7	5	10	1	6	3	9	1
TTGTAGGTGTGTTATG	ref_5829_new	15	15	4	12	28	9	24	6	14	8
ATATTCAAGGACTTAC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
TATGACTAGAGTCGCC	ref_5829_new	37	73	50	43	65	42	75	45	93	39
TTCTTGTACCGCCAAG	ref_5829_new	60	131	95	70	134	63	127	56	127	60
ACTCTATTCTTCACCT	ref_5829_new	1	6	1	1	3	1	4	1	2	0
GGCACAAATCGTCTGC	ref_5829_new	11	33	28	23	44	15	46	11	38	23
ATGTTTACGAATATTA	ref_5829_new	4	5	4	6	8	5	7	4	7	6
TCTCAGCTCTTGCGGA	ref_5829_new	4	12	7	2	13	5	20	13	7	4
TTGCATTATTCCATGT	ref_5829_new	0	5	0	0	3	3	1	1	3	0
TGCTGTTAAACTCCAA	ref_5829_new	24	41	17	16	37	13	41	21	33	16
TCTAGCACTAATAACT	ref_5829_new	0	0	0	0	0	0	0	0	0	0
GCTTTTCTCCTTCCCC	ref_5829_new	73	114	78	75	106	65	107	51	117	54
CAGGATAATGTAACCA	ref_5829_new	59	142	73	62	141	55	146	58	134	62
TTATCCAGATTTGTAA	ref_5829_new	35	82	54	50	93	43	70	42	75	40
CTGGGAGGGTTCGACT	ref_5829_new	29	47	38	20	52	34	53	23	47	21
TTAGCTGTGTTGTGGC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CCGCTCCTTTACATTC	ref_5829_new	8	8	8	1	11	3	5	3	2	0
CTTGTGGTTGAGTGTG	ref_5829_new	19	63	33	28	62	27	62	30	64	19
CACTAGACCCTCAATC	ref_5829_new	24	54	36	32	56	22	75	22	65	13
GTTTGTAGGCTCATGT	ref_5829_new	12	18	13	16	37	10	35	19	30	9
AAAAAGATTTTACTTG	ref_5829_new	21	41	18	20	38	21	35	16	41	15
TTATCACGGTGACTAG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
GAGGCCCGGCAAGTGT	ref_5829_new	28	69	44	32	60	25	59	39	60	31
TGTACGCTCATGCTGC	ref_5829_new	18	37	26	21	53	13	42	15	33	20
GCTTCGGATAAGGTTC	ref_5829_new	13	35	20	10	26	15	37	13	38	18
ACTCACAGTTTTACCC	ref_5829_new	10	21	6	5	23	6	13	7	22	10
AAACCAGGATGTCTGC	ref_5829_new	46	69	46	39	59	24	60	23	71	21
CATTCGGATTCTCGGG	ref_5829_new	10	29	15	13	27	9	23	11	35	19
CCCCGCAGGTAGCCTC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CGCTTACATGCTATTT	ref_5829_new	14	8	2	9	6	5	16	6	13	7
GATTAACCTGTTTATC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
AGGCCAGCCTGTTTAC	ref_5829_new	14	36	24	17	34	12	21	14	24	10
TGATGTGGCTGTACTT	ref_5829_new	24	44	26	32	41	21	51	21	42	27
TTTACTCTGGATCTTG	ref_5829_new	4	3	7	4	8	1	9	4	9	0
TGACTTAATCATAAAC	ref_5829_new	8	18	12	9	28	10	17	8	16	7
TGCGTGCAGAAATAGA	ref_5829_new	19	22	21	9	13	12	28	12	31	13
CTCTGGTTATTTCTGG	ref_5829_new	55	91	72	63	105	61	120	65	124	65
ATTATGCGAATGTACA	ref_5829_new	8	13	11	4	9	11	11	5	9	5
GTCTCAGTCCCCGTTT	ref_5829_new	5	17	7	6	23	7	12	10	16	4
GGTGGTGTTCAGTTCT	ref_5829_new	13	16	13	11	34	6	19	9	18	11
TGTATAGTCGGGCTTT	ref_5829_new	8	14	8	6	9	4	15	6	12	5
CTGAGGACACATGCAC	ref_5829_new	11	18	16	5	17	5	21	6	23	13
GAAACAGTCTTAAGAC	ref_5829_new	18	34	34	15	30	21	39	13	35	22
ACGTATCCCGAAAGCA	ref_5829_new	9	26	10	12	25	12	19	6	20	10
GATCGACATTGATTTA	ref_5829_new	39	93	42	44	88	34	110	21	103	43
TATAAGCCCGAGTAAT	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CCTCCCGGCATTTGGT	ref_5829_new	30	28	25	15	38	27	37	14	34	21
GATTGGGGATTCTCTC	ref_5829_new	20	44	26	29	47	23	44	24	52	15
CAATTTAGTAATCTTT	ref_5829_new	179	318	202	180	275	155	319	164	338	162
CAACAAATCATTTTCA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
GTGATGGGTCTGGTGC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
GCAATCAAAGCGGTAT	ref_5829_new	28	46	25	37	57	39	65	24	67	17
CGTAGTTGCATTGTTC	ref_5829_new	6	20	12	9	16	8	19	4	23	6
GTATGCAACGCAGACG	ref_5829_new	8	17	6	8	9	6	9	7	13	5
TCTTTAAGCCTCTTAC	ref_5829_new	4	8	9	4	14	11	5	7	14	6
GCCTGGGCTTTGCTTT	ref_5829_new	37	58	35	25	39	23	65	25	46	20
ATAACCGGACAAATCA	ref_5829_new	17	34	17	16	26	12	24	18	33	19
TATGTGAGTATTTCTC	ref_5829_new	1	0	0	1	0	0	1	0	1	0
CGATCGATTCGAATTC	ref_5829_new	121	201	123	81	189	101	191	87	220	100
GCTTTTTGTGCAAATC	ref_5829_new	12	15	6	5	9	6	14	5	14	7
CCAGTTTGCCCTGAGT	ref_5829_new	21	48	25	29	48	21	55	34	52	25
CACACGAGACTCTGAT	ref_5829_new	8	16	2	3	19	4	20	6	16	5
TTAGCAACGAGAGCGC	ref_5829_new	6	8	8	6	10	10	7	3	7	1
AGAAACGCATAGGTAC	ref_5829_new	55	89	56	58	82	52	104	42	107	51
TTGCGCGTTTGTTGCT	ref_5829_new	2	1	3	3	2	1	2	3	3	4
TCGCCAATACCAGGAA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
GGGTGATAGTCCTTCG	ref_5829_new	32	55	41	40	67	41	87	35	65	37
AAGTCATCTATTAGAT	ref_5829_new	7	11	4	5	6	3	7	5	12	5
GCTGGTTCGCCGGTTC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CATTTGTTTCGAGTCA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CTACTTCACGGGCCTG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
TATTATGTTATCTGGG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CCTACGGCCCTACAGT	ref_5829_new	14	41	20	26	58	25	61	25	56	15
TAATGGCAAATTTAAC	ref_5829_new	322	544	391	321	525	296	580	307	500	282
GCATATTACTGTCTTT	ref_5829_new	24	34	11	29	46	16	29	16	24	14
TACCCTTCACAAGACG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CTAAGATTTTTAATAG	ref_5829_new	6	19	16	12	27	13	22	8	27	8
TTATAGAGCTCGAAGG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
TCCGTGTTATGTTGAA	ref_5829_new	65	118	72	60	135	54	141	61	130	50
ATATTTACCCTCCGCA	ref_5829_new	23	36	21	23	29	21	39	17	54	27
TAGACGTAGTCGGCCT	ref_5829_new	15	30	19	15	36	16	24	11	32	15
TTATTTATGAGCGTTG	ref_5829_new	14	42	30	44	33	19	37	15	31	15
CATGTACCGGCTTACC	ref_5829_new	3	14	19	12	17	13	26	9	31	13
CTTTCGGCTGTGGGTT	ref_5829_new	28	62	49	65	63	51	57	35	75	30
TGGCAGACCGCGATGA	ref_5829_new	21	29	21	11	26	20	40	13	41	14
AGTTTGCATCACATAC	ref_5829_new	14	15	13	18	18	3	22	11	15	10
GCACCATCTTGTCTTA	ref_5829_new	20	50	27	21	34	14	46	15	54	17
GCCCGTTTCCACACGT	ref_5829_new	4	13	7	6	25	6	15	5	12	8
TCGAACAGGGGTATTG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
ATCGGTAGCATCAGTT	ref_5829_new	15	45	33	25	46	11	58	16	49	24
CATGCGTATGGTGTCG	ref_5829_new	22	37	25	7	30	17	40	19	36	13
ATCAATCCAGGGTGTA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
ATCTTGAGGTCCCTCA	ref_5829_new	1	2	3	2	1	1	10	3	6	4
ACGGTGCATCAAATAT	ref_5829_new	20	26	19	12	21	9	33	11	29	14
ACGTCCCAGAGTCGCG	ref_5829_new	115	187	129	120	180	119	197	84	207	85
TTGCGCGAGGGTGCGG	ref_5829_new	20	47	25	33	33	20	43	14	49	16
ACCACACAATTGTGTA	ref_5829_new	21	76	52	51	78	34	92	33	78	29
TCTGACGTCGCAAATC	ref_5829_new	68	123	87	90	117	66	133	72	130	59
CTGACAGTTGGTTGTA	ref_5829_new	21	49	22	31	44	12	64	16	45	9
GCCGTTTCGCGCGATA	ref_5829_new	23	30	18	8	37	22	43	22	30	16
GTTACACTTGCGTCAA	ref_5829_new	1	6	8	1	3	1	3	4	3	2
AACTGCTTTCGTCCTC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
TTAGCTGTGTGGTTGC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CCCTCATATATCCCGT	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CCGCGTTGAACACCTT	ref_5829_new	7	5	1	0	7	2	0	3	5	4
GTCATCCTGCTAGTAT	ref_5829_new	0	0	0	0	0	0	0	0	0	0
GAATTCGTTGGTGTTT	ref_5829_new	7	15	17	4	8	2	22	13	15	9
GACCATTGGGGGGCGT	ref_5829_new	4	12	10	3	10	5	17	6	15	7
AGTATTGAGGAGTTAT	ref_5829_new	0	0	0	0	0	0	0	0	1	1
CCTTGTCTTTTGCCGG	ref_5829_new	0	13	5	3	10	12	9	6	8	8
CGGCAACTGCTGCCGT	ref_5829_new	11	30	15	7	34	13	28	14	36	11
TAGCTTCTTCTGCCTT	ref_5829_new	15	20	19	12	23	8	17	13	28	7
CACGGCGGTGTCGAAA	ref_5829_new	66	125	65	62	135	57	117	47	126	63
GTGCCAATCCTCCTCT	ref_5829_new	0	0	0	0	0	0	0	0	0	0
TTGCAGGCTAAAAGCC	ref_5829_new	14	35	23	18	22	20	23	19	22	11
TCGGATCTTAGCCTCT	ref_5829_new	3	9	2	1	4	2	5	7	6	2
CAGCACTTTCGGTCGC	ref_5829_new	26	49	30	20	65	17	59	32	69	22
ACATTTTACAATCTTA	ref_5829_new	65	83	64	65	94	62	83	63	85	55
TGATCCGTATTCAGCT	ref_5829_new	14	21	13	9	23	16	11	19	20	6
GTTTTCTCACGTCTTG	ref_5829_new	0	5	4	4	8	2	17	6	6	4
TTAGGGCCGTAATTGA	ref_5829_new	7	9	11	18	10	5	14	10	14	10
CGCACTTCAGCTTAAA	ref_5829_new	42	91	57	50	97	45	92	56	78	51
ACGAGAACTATTTCCT	ref_5829_new	24	47	39	37	49	35	69	36	51	23
CGACCCCCGTGTGGGC	ref_5829_new	2	24	8	4	14	2	14	6	18	2
GCCGGAAATTAGCTAG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
AATAGCGCCTCATTTT	ref_5829_new	12	23	15	12	19	16	33	14	30	8
GTTCTTCATATTTGTT	ref_5829_new	46	64	38	32	75	33	51	34	73	36
TTCCATTCGGGCTCTT	ref_5829_new	48	99	75	75	131	58	129	65	120	68
TTACTACCCGGTTTGT	ref_5829_new	0	0	0	0	0	0	0	0	0	0
TCGCTTGTTAGTAGCT	ref_5829_new	5	9	3	2	5	2	5	7	7	3
TGGATACTGGTTGTCA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
AAATCGGTCCAATTAT	ref_5829_new	21	30	28	20	31	11	35	19	35	17
GCCTACGAGCGCCATA	ref_5829_new	18	21	17	13	31	18	22	16	35	8
TTTCTTTTTTTGACTC	ref_5829_new	2	5	6	5	14	2	8	3	14	4
ACTTGTATATTGCGTT	ref_5829_new	9	22	13	16	20	15	21	10	28	6
GCATGTAGCGTGTGTC	ref_5829_new	4	17	10	3	11	5	20	10	19	7
CCCCGCAGGTAGCCAC	ref_5829_new	6	10	6	7	17	3	11	5	11	3
CTCTAAGGGAACAGAA	ref_5829_new	8	21	12	11	18	5	15	7	23	9
ACTTTTCCGCTTTTTA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
GGTACATGAAAATCAG	ref_5829_new	0	0	0	0	0	0	0	0	0	0
ATCTCATGGTATACCG	ref_5829_new	44	72	53	44	86	60	97	48	64	52
CAGGATAATGTATCCA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
AGCTAGTTGTTGTGAA	ref_5829_new	0	0	0	0	0	0	0	0	0	0
TATTTCGATAAACTCG	ref_5829_new	6	8	17	12	14	5	24	7	22	9
TTATTACCACCATCCC	ref_5829_new	9	20	9	14	18	10	37	7	19	13
GGTATCTGTGTACCCA	ref_5829_new	52	25	47	49	41	36	38	40	39	42
GCTACATGTTGCTACC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
CTTTGTCTTATCGGCG	ref_5829_new	6	26	15	15	33	8	22	11	18	8
TTCTCCCGCGGTCCCT	ref_5829_new	33	132	31	31	117	35	130	25	156	31
TGCCATTGGCCAAGTA	ref_5829_new	26	27	39	34	32	25	39	19	37	31
CAGGGGGGGCAATCTA	ref_5829_new	7	13	2	8	10	6	18	4	16	4
ACATGTAGTGTGACCC	ref_5829_new	0	0	0	0	0	0	0	0	0	0
ACCGGATGGATAGCGT	ref_5829_new	3	7	4	5	8	3	5	4	7	3
GATTGCGTTCGGCTCA	ref_5829_new	39	110	63	47	118	25	113	51	115	31
CTTCGGAGTTATGGTA	ref_5829_new	5	5	4	2	10	3	6	1	10	4
TGTCTGTCTGATTTCT	ref_5829_new	37	62	58	47	81	38	71	46	69	60
AGTGGTCGTAACTTTT	ref_5829_new	31	41	41	34	47	35	63	24	58	19
ATTGGGGCTTGCTATC	alt_6120_new	49	38	57	49	37	45	40	35	26	48
GCAATTACCTAATCGT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GAGTGTACTCTTACGA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GAAGATGGTTTTCGGG	alt_6120_new	56	25	76	62	34	60	39	58	27	49
TGTATTGATCAGTTTG	alt_6120_new	41	44	68	51	40	51	42	62	61	40
TATGGATTTCTACGGG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TACACCGATTGTCTAT	alt_6120_new	26	27	52	44	36	40	44	37	41	30
TCTTTCTACCTTATTT	alt_6120_new	103	59	121	109	76	98	71	94	59	84
TCACATGCGCGGCTCT	alt_6120_new	33	14	26	28	17	27	8	23	22	34
GTGTTCTAAGGTTTTC	alt_6120_new	13	11	27	13	8	12	13	14	8	16
CTTTAATACGGTTCAA	alt_6120_new	5	5	14	7	13	9	9	9	4	4
GTGTATTGCCGCCAAC	alt_6120_new	64	43	79	69	44	54	45	64	64	43
TAAACTCCAGTTTGTG	alt_6120_new	7	1	3	6	7	10	11	3	6	7
AGTATAGTTTAGGGGC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GATTGGTATGGGACCC	alt_6120_new	44	38	49	41	21	52	24	33	30	33
CCCGCGCTTTTGAAGC	alt_6120_new	21	13	24	28	13	28	22	15	25	23
TACCTCGATTTTACTG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CGTGTTGTTTTTCAGC	alt_6120_new	16	20	21	14	20	23	15	24	17	20
TTCGCTCTGCTGCTTT	alt_6120_new	15	16	27	18	16	21	9	20	10	19
CGTGAACGACAACTGG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
ACTATATAAGCAGCAA	alt_6120_new	9	9	19	4	9	7	9	11	9	12
TCGTCTCTATCCGTTA	alt_6120_new	60	36	50	57	27	34	26	43	33	31
GGCGTAACCCGAACGG	alt_6120_new	204	129	227	185	125	168	124	144	155	153
TAGGCACCTTCATCCC	alt_6120_new	108	77	107	105	57	83	93	65	78	83
TTACTGCTACCGACCA	alt_6120_new	18	25	25	23	24	16	31	22	11	24
ACAAATGTAATTCTCG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
AGGCAAAGACTATGGG	alt_6120_new	38	21	33	36	21	36	22	36	16	40
GAGACTACCATACATC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
ACCTACATGATCCCTT	alt_6120_new	61	24	32	41	29	23	34	28	40	25
GCGACCTTGTTATATA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
AAATAATTCTGACCAT	alt_6120_new	35	24	40	36	19	21	20	34	20	32
TGTAAGTGACCCTGAC	alt_6120_new	20	34	42	42	30	42	25	26	29	41
TTTAGAACTTTAGCGC	alt_6120_new	70	48	62	70	37	60	56	59	64	56
TCCTATTATAATAACT	alt_6120_new	36	25	38	37	24	27	20	46	27	38
TCCGAAATACAGTTCA	alt_6120_new	6	7	9	9	10	10	7	12	9	7
CCCTGAGAGCTCGATC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TAATGGCGGGGTCACT	alt_6120_new	102	59	112	117	81	102	67	104	65	99
ACGTCTTGCGCTCACA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GGTCTCAGGCCAGGGT	alt_6120_new	18	7	21	26	8	17	13	16	14	17
AGATTTAGGTCATTGG	alt_6120_new	40	33	55	57	31	39	42	33	44	47
GATTATAAATTTCGTT	alt_6120_new	10	2	12	7	4	20	12	14	9	10
TTGATGAACAGGGGGC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
AGTATCAAAGCCGGCT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CAGTACTCAAACATGG	alt_6120_new	110	65	112	101	78	109	67	104	64	74
CACTCCCCATTTATAC	alt_6120_new	1	41	2	0	46	0	44	0	51	2
GCTTGGTCTTTGGATT	alt_6120_new	118	127	160	159	130	136	130	135	138	138
TTGCGTTTTTAGTATT	alt_6120_new	79	73	96	60	63	88	76	71	60	62
GACAGGTATCCCACTA	alt_6120_new	38	37	53	49	27	35	31	45	37	32
TTGTTCACGATATTAC	alt_6120_new	79	60	83	69	57	72	47	65	61	62
GTTGACCTGATGCGCA	alt_6120_new	20	13	22	17	20	21	20	24	16	25
ATGCCCTTTTCCTTCC	alt_6120_new	15	4	10	10	2	12	4	14	6	13
GGGCCCTCCTACGTTT	alt_6120_new	59	55	93	74	59	56	73	66	69	67
ATTGAGTAGTGAGCGG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TAAGGCGTATCTTTTT	ref_6120_new	109	59	145	127	78	117	88	108	119	100
CCGCTCAGAAATTTGA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TTGGTAAAATTGACTT	alt_6120_new	238	168	316	255	174	218	193	200	191	234
TGTTTCCTTAGAATTC	alt_6120_new	14	4	13	17	10	7	12	10	8	11
TTGAAAATCATTTCAC	alt_6120_new	26	19	35	24	20	28	26	18	22	16
TTCCTTTGCTTACGTA	alt_6120_new	19	7	23	14	18	11	7	17	9	13
GTCGAATTCACCGTAT	alt_6120_new	14	10	13	20	12	14	13	18	7	20
TCTTTCACTTTACCGG	alt_6120_new	196	127	223	199	133	177	135	145	141	161
ACCTCGGTTCGAGAGA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GCCTGCATTGATGGTC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TGCGCTTGTATTTACG	alt_6120_new	61	37	78	53	54	39	38	60	49	42
TTAGACGTCGCACGGC	alt_6120_new	21	19	28	31	16	29	13	8	22	15
TGGGTCTTTCAACATC	alt_6120_new	13	4	14	11	6	4	10	17	12	17
ACATTAGTTTTTCCGC	alt_6120_new	96	80	152	110	79	117	99	110	106	98
GCGATCTCTACTATAA	alt_6120_new	22	12	37	18	23	33	22	19	19	24
TAACTGCGGATCATAG	alt_6120_new	32	28	32	33	25	33	29	26	29	27
CAGTACATGTGGGAGT	alt_6120_new	65	74	98	91	61	64	48	78	54	74
CTATCGTGTATCCCAC	alt_6120_new	27	51	43	30	49	34	49	34	31	44
CTCCCTGTTCAGCGGC	alt_6120_new	31	104	27	18	115	19	103	18	113	17
TTAAAAACCTGGCGCA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TTGCCGCTTCAATATT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GAACTGTGAACAAGTG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CGGTTTCGCACTGCGC	alt_6120_new	6	13	6	14	28	2	13	10	26	7
GTAAACCCTTAAGGTA	alt_6120_new	11	9	14	15	16	16	7	17	13	14
TCTTTGCGTAGATTAA	alt_6120_new	27	24	24	27	10	22	22	14	7	20
TATACTCTTCCACAAG	alt_6120_new	91	68	112	124	61	98	71	102	80	77
TGGGCTTGGCGATGTC	alt_6120_new	8	7	15	8	8	12	6	7	7	7
TGATGCGGTTGGTTTT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TCTCTCTCCTTTTATC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TTCAAGATTAGTTTTT	alt_6120_new	26	17	19	22	14	25	20	14	23	23
TTCGTTAGGTAACAAG	alt_6120_new	32	15	34	41	24	23	27	35	37	31
ATCGAGGGATGTGGCG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CCGCAAAACAATACAC	alt_6120_new	6	11	18	10	4	8	27	6	16	8
GAAACACGTGTGAATT	alt_6120_new	39	47	52	40	49	40	45	55	52	59
GGCCTTCTACGAGCGT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
ACCAAGACAAATACCT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TTATAGTACGCCACAT	alt_6120_new	19	7	14	13	13	17	11	15	11	9
AGCTGAAAAGATTTGC	alt_6120_new	38	15	29	28	13	22	19	37	22	23
CAGACGGAACTCTTTC	alt_6120_new	9	1	8	13	3	5	5	3	3	10
GACGATTGCGTTTGAT	alt_6120_new	34	21	15	21	17	21	16	23	20	23
ACGCAAACTACCCCGC	alt_6120_new	8	17	3	7	17	9	9	6	6	2
TTCTTTGGTCCCGGAT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GAATCCTAGCGCTAAT	alt_6120_new	110	93	119	104	81	85	73	84	91	101
CTCTGGGTCTAACAAT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GATGGGGTCTAGAACA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CGCAGCGTGTCCCGGG	alt_6120_new	94	43	110	105	49	86	72	88	63	78
ATGACCTTCGGGACGG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
ACCGAGGACTGCAATT	alt_6120_new	0	0	1	0	0	0	1	0	0	0
TCCGCATGGAGCTCTT	alt_6120_new	86	65	104	91	60	73	57	84	63	77
ACGTCTTTGCCTTTTC	alt_6120_new	11	6	17	17	16	18	11	28	8	20
CACCAGCTGGCGACAC	alt_6120_new	18	15	20	19	15	20	20	22	13	8
CAGCGTCATAGGGATC	alt_6120_new	139	128	186	171	121	115	142	145	145	123
CGTACAAATTAAAGCG	alt_6120_new	96	59	107	86	65	86	73	90	62	67
TACCTAATATCGCCCC	alt_6120_new	31	21	30	29	30	23	21	43	22	33
CAATCTATGGACTACG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
AAACGGTGTTACTTAG	alt_6120_new	40	61	44	40	60	41	58	32	74	46
CATACGCCTATTCTTA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TTTACTGCCCCGTAGA	alt_6120_new	11	19	17	11	18	14	17	5	16	12
GTCCTGTCTACTCTAC	alt_6120_new	239	201	260	256	196	219	174	229	203	219
CATGATCGTCCGTCGC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GATGGGTTCTAGAACA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
ACCTACATGAATCCCT	alt_6120_new	9	22	22	22	20	15	8	18	18	11
ACTCTGATCCTACCTG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
GAATTGTTTTGTTGCT	alt_6120_new	66	50	77	68	55	68	52	67	57	65
GATTTGCGTACCCCTG	alt_6120_new	70	51	81	90	61	68	61	63	55	59
TCGCGACGACAAAGTT	alt_6120_new	48	30	48	60	48	48	42	37	46	45
TCATCTTACCTCTTCT	alt_6120_new	28	19	22	21	33	21	33	24	19	20
TTGCCGGTCAAATCGT	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TGCCATTGTACCGGTG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
AGTCTTCGCTTTTGTT	alt_6120_new	40	30	78	45	51	58	29	46	33	51
TAGGCGGGACGGGAAA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CGTTGTGGGCAGCTTA	alt_6120_new	22	12	22	25	13	29	23	24	19	22
ATTCATTACGTTGAAG	alt_6120_new	26	31	35	32	24	29	21	25	26	34
TTGCGCACGGTCACAA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TTTAATTCTTCCCCCT	alt_6120_new	25	10	24	36	16	21	19	30	10	18
TTTCTATGGCTCCCGA	alt_6120_new	23	14	29	25	14	29	18	18	19	14
AATAGTGGTCTCAGTG	alt_6120_new	32	17	23	15	14	24	16	16	16	21
ATTCAATTTTCTACGA	alt_6120_new	38	27	47	36	26	32	23	30	26	42
ATGCGTATGTCAAACG	alt_6120_new	98	90	132	133	80	91	87	81	88	84
AAAACGTAAACTTTCG	alt_6120_new	23	18	33	20	13	23	14	30	21	25
TACTCAGACTTAAGTT	alt_6120_new	155	143	195	176	160	168	125	174	143	168
TGAGCGGCAGTTAATC	alt_6120_new	9	7	8	10	8	10	10	3	5	8
ACCTCCGGGTTGCATC	ref_6120_new	74	96	100	110	111	86	118	77	89	80
AGGCCCAGATGTTGAA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
TTGCTTCGCAGAATTT	alt_6120_new	24	29	26	18	24	11	26	20	13	35
GCGATAGCTGGTTTCA	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CACAGCCTTCAGCGGC	alt_6120_new	0	0	0	0	0	0	0	0	0	0
ATTAGATCGTAATCCG	alt_6120_new	110	65	106	102	60	98	77	100	88	121
TAATAAATACCGAAGG	alt_6120_new	0	0	0	0	0	0	0	0	0	0
CAGCTATGACCATAAG	ref_5757_new	23	33	20	13	26	16	33	11	40	19
CTCTTTAAACTCCCTT	ref_5757_new	9	23	8	6	19	11	20	6	15	2
GTAGTTTAGGATTGTG	ref_5757_new	0	0	0	0	0	0	0	0	0	0
GACCTTGGGGGGGCTT	ref_5757_new	0	0	0	0	0	0	0	0	0	0
GTGCCTTTCATTATTT	ref_5757_new	0	0	0	0	0	0	0	0	0	0
GGTGTCTTTCTTTTGC	ref_5757_new	7	14	14	10	10	11	11	12	9	3
AGCACGGCCGAGAATG	ref_5757_new	33	51	27	26	52	26	62	24	66	26
ATTCTCAGATCGTGAT	ref_5757_new	40	56	50	17	60	30	54	35	73	44
TCGGTGATTAACGCGC	ref_5757_new	0	0	0	0	0	0	0	0	0	0
TAGAAATTCTCGCGTG	ref_5757_new	18	28	19	29	26	23	28	19	28	14
GTGGAGCCTTCTAGGG	ref_5757_new	14	17	9	13	29	7	24	13	35	10
TTTTTACGCTTACAAT	ref_5757_new	0	0	0	0	0	0	0	0	0	0
AGTTGACCGTTATGTG	ref_5757_new	0	0	0	0	0	0	0	0	0	0
CGCAGTTTTATCCAAT	ref_5757_new	33	58	49	35	48	26	59	35	53	31
CGCATCCTAATCGCAA	ref_5757_new	24	51	45	36	66	25	63	25	48	18
TTACGGAATACCAATC	ref_5757_new	0	0	0	0	0	0	0	0	0	0
ATTACATTTCGCATCT	ref_5757_new	34	34	31	24	40	30	47	21	41	22
CTCTGCTGCCGGACCG	ref_5757_new	14	48	29	33	54	29	44	20	40	21
CCCCTCGGCAAAGAGG	ref_5757_new	17	36	28	22	34	28	38	29	42	26
CAAGTATAGCGTAGTT	ref_5757_new	5	16	9	18	20	9	24	11	20	5
GGTGACAAACTTATCA	ref_5757_new	0	0	0	0	0	0	0	0	0	0
CTGGGTCACCATGTTT	ref_5757_new	45	66	59	43	87	60	88	32	80	35
GTTCTCGCGGTTAGGA	alt_5757_new	11	49	21	22	32	26	33	21	32	25
GTAGGTAACTTGAGGA	ref_5757_new	0	0	0	0	0	0	0	0	0	0
TGTCCTGTAAACGAGA	ref_5757_new	0	0	0	0	0	0	0	0	0	0
TAGTTATGGAGCTGAT	ref_5757_new	20	21	20	13	24	15	35	15	24	21
GGCGACTTAGCTTGTG	ref_5757_new	0	0	0	0	0	0	0	0	0	0
AAAACGCTCCCAAAAG	ref_5757_new	16	70	24	31	85	17	97	13	114	27
TGAAATCGTCTCATAT	ref_5757_new	16	20	7	4	12	11	13	7	11	8
CGGGTGGCACTCGCAT	ref_5757_new	6	3	13	3	5	7	5	3	8	4
TCGTGAATGAATATAT	ref_5757_new	0	0	0	0	0	0	0	0	0	0
ATTGGGGGCCATGGGT	ref_5757_new	0	0	0	0	0	0	0	0	0	0
AAAACGGCGTGAGAGC	ref_5757_new	16	12	13	13	16	15	13	7	19	15
CTTTCATGGACTATAC	ref_5757_new	28	56	35	35	34	30	47	21	53	31
ATAGTGTGTCTTCGGT	ref_5757_new	14	22	27	19	17	8	11	8	30	12
ATAATGAGAGTCACTG	ref_5757_new	11	11	6	5	8	7	20	6	13	3
CTATATCCCCATACAG	ref_5757_new	14	25	17	11	27	16	33	2	31	9
CGGCGCGGTCTAGCGG	ref_5757_new	0	0	0	0	0	0	0	0	0	0
ACATTTGTATGATCCT	ref_5757_new	7	3	11	7	6	6	7	6	13	2
CTGTTCATCGTCATTC	ref_5757_new	0	0	0	0	0	0	0	0	0	0
ATCGTACTTGGCTTGT	ref_5757_new	80	84	97	76	83	100	79	93	70	73
CAATCTTAATGCGGAT	ref_5757_new	21	54	26	28	53	20	23	20	54	28
ATATATTTACCGGGGG	ref_5757_new	14	15	15	12	4	5	15	15	15	8
TACCGATAATCGAGAC	ref_5757_new	11	21	12	17	25	8	12	11	19	8
AGTCGATTCAGCTCTG	ref_5757_new	0	0	0	0	0	0	0	0	0	0
CTCATGTGTCCACCGT	ref_5757_new	28	59	43	34	89	42	68	34	88	34
TGGTCTTAGCCCTGCT	ref_5757_new	16	17	11	7	14	14	14	9	17	14
TTTGGTTGCCTCAGCG	ref_5757_new	15	24	18	16	27	27	37	16	30	10
GCCGGTGATGTACCTT	ref_5757_new	20	57	22	23	55	17	76	22	57	17
GACTTCATACTTATCT	ref_5757_new	6	10	3	7	12	1	12	6	12	10
CCAGGGGATATTAAAA	ref_5757_new	30	20	21	17	25	34	35	29	41	17
TGCTTGGGTTTAGGGT	ref_5757_new	19	20	23	13	32	15	39	8	35	12
GTGCCAGACGACTGCT	ref_5757_new	35	65	54	37	50	41	70	28	69	24
TGCGTTTTCACTATCA	ref_5757_new	29	49	31	26	43	26	45	32	63	35
GGCTGGGTAACTGCAC	ref_5757_new	15	21	15	9	20	11	13	13	21	3
CGTTCAGCTGGTTCTA	ref_5757_new	5	11	5	7	8	5	18	5	16	0
CTTTGTTAAGTTTGGC	alt_5757_new	83	108	98	83	153	83	160	64	162	81
CTTTTATGAATAGAGC	ref_5757_new	6	9	4	6	10	8	14	5	11	3
CCTAGCCCACCATGCA	ref_5757_new	0	0	0	0	0	0	0	0	0	0
GTCTCATCGGATACCA	ref_5757_new	9	14	17	5	10	10	14	10	12	10
TGTGCCAGTTCTCCCC	ref_5757_new	0	0	0	0	0	0	0	0	0	0
TAGTACTCCTCTGGTT	alt_5757_new	205	373	240	208	434	171	415	231	443	174
CGTGTACGTCCAGCCT	ref_5757_new	6	14	8	11	17	12	13	7	22	9
CCCGGCGCTGCTAAGA	ref_5757_new	10	26	14	15	22	12	26	5	33	15
AACAACATTCGTCATA	ref_5757_new	3	13	7	7	15	5	11	1	9	10
TCATAACTCAGGTTGC	alt_5757_new	35	36	40	26	46	26	32	13	53	23
TAGGGCACCATATTAC	ref_5757_new	31	42	38	25	48	25	58	27	54	24
GGGAGTCCCTATACGT	ref_5757_new	0	0	1	2	3	2	1	1	6	1
TAGAATTGCCTCCCAG	ref_5757_new	45	115	61	48	98	69	92	56	88	41
GGCCTCTTTGCTTGCA	ref_5757_new	22	28	20	13	30	25	25	15	33	10
TATGTGGATAGCAAAT	ref_5757_new	19	30	14	19	19	12	19	11	19	18
CCGGTTGGCGGTATAG	ref_5757_new	0	0	0	0	0	0	0	0	0	0
CAGCTCGTAACGACCA	ref_5757_new	12	36	12	15	43	17	41	9	33	13
ATTGGGTTGGCGACCG	ref_5757_new	6	18	8	9	18	8	19	12	16	12
GTATTGATAACCGTGT	ref_5757_new	25	54	37	33	64	33	53	37	56	23
ATTGCTGGTGGCTCAT	ref_5757_new	0	0	0	0	0	0	0	0	0	0
TGGTAGTATCCCACCT	ref_5757_new	9	2	11	9	5	0	7	4	6	3
TATTGGCAGGTGAACG	ref_5757_new	0	0	0	0	0	0	0	0	0	0
CTGGCGGACTCTGTGT	ref_5757_new	15	26	14	17	33	19	35	13	34	20
TGAGACCAGGCACTTA	ref_5757_new	27	52	27	27	43	30	35	29	52	31
CCAAATGGATAGTTTA	alt_5019_upstream	8	5	2	0	2	1	5	4	2	4
CAGGGTGGAATTAGTC	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTAGGTAGATCT	alt_5019_upstream	15	13	20	14	32	13	22	11	27	18
CAGGGTGGATTTAGTC	alt_5019_upstream	331	412	461	400	356	344	369	311	375	289
GTCGAAGCTATCGTCT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGGGGTTTACTCC	alt_5019_upstream	49	79	88	73	61	60	81	55	63	65
AATACCGGTTTAGTTT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
GTACTTCACCGGCACG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTCACCAGAGGTCTGC	alt_5019_upstream	19	19	19	20	21	12	28	19	18	16
GTCTAGGCTCGCGTAA	alt_5019_upstream	8	17	10	12	6	5	15	6	16	12
AAACCTTTATACGAGT	alt_5019_upstream	47	46	48	48	48	50	53	51	56	41
GTGGTGCTCTAGGGCT	alt_5019_upstream	46	42	64	40	46	39	47	49	47	28
ATGCCCAAATATCCTT	alt_5019_upstream	37	37	67	42	48	43	54	37	33	36
GGGATTTCCTGGCTGT	alt_5019_upstream	23	24	28	24	36	31	26	35	28	29
CCGTGTGGACCTAAGG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTAATGCCCTGACAAA	alt_5019_upstream	81	100	93	96	122	84	94	78	91	77
TGTCCATGTTCAACGG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
CTGACCTCCAAAGCAA	alt_5019_upstream	15	20	19	20	15	22	24	20	29	13
AACACGCTTCGTTTAT	alt_5019_upstream	40	21	28	35	26	23	18	35	40	32
CGATTCCCGTTCACTT	alt_5019_upstream	183	160	216	209	143	180	179	182	172	166
CCCCGTCTTGCTCCGA	alt_5019_upstream	0	18	1	1	14	3	7	4	9	1
ATGGCGCTCTGGACTC	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTCAGCTCTTTTT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
GTATGTATCGGCACCC	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
GTGGATGTTCAACGAC	alt_5019_upstream	8	11	17	14	13	10	9	16	13	6
ATTGCAGAAGGTGTGC	alt_5019_upstream	59	80	97	59	76	64	75	58	93	57
CGTCGTTTTTATAGCC	alt_5019_upstream	29	25	35	35	39	29	24	26	23	30
CTTTAGCTCATTTGCA	alt_5019_upstream	470	451	544	470	497	417	505	365	446	371
CCTTTTAAAACGGTGC	alt_5019_upstream	50	32	54	47	41	60	54	32	40	37
CCTATAAAACAAGCAG	alt_5019_upstream	23	39	27	31	50	15	51	26	39	14
GGTTTCTGTCACAGTT	alt_5019_upstream	10	18	27	19	18	25	18	30	16	13
TGCTTTGCGGCACTAC	alt_5019_upstream	7	18	20	21	16	9	11	6	22	12
TAATGTACTGATCGTT	alt_5019_upstream	32	25	33	30	41	21	27	12	38	37
AGTCTATTTGTAAGGT	alt_5019_upstream	75	59	73	64	76	64	75	65	71	64
ACCTATAGTAAGCGTG	alt_5019_upstream	88	129	100	107	110	83	106	75	98	71
AGTGTGTTGAGCCCGT	alt_5019_upstream	77	61	78	66	66	52	56	49	85	55
AGAGAAGTCCCGTTCA	alt_5019_upstream	17	10	23	19	14	14	20	12	12	20
TGCTGATAAACCTGGC	alt_5019_upstream	33	32	52	44	22	41	32	37	48	45
TCTCGATATTCAAGGT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCAATCGTCAGCGATT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	1
ATGGTGGGGCTCTGTT	alt_5019_upstream	40	51	72	38	39	47	46	42	68	39
ACTGTGGACATTCCGA	alt_5019_upstream	40	34	67	46	40	48	43	36	52	53
CGAAGGTCGTAATTGA	alt_5019_upstream	9	10	16	7	9	14	10	12	6	6
CGGCGTATGTGCAACC	alt_5019_upstream	111	85	112	95	103	98	126	100	83	89
AGGCCGTCATGTTGGA	alt_5019_upstream	42	60	62	69	41	59	71	59	58	52
TTTTCTGTATCAGCGC	alt_5019_upstream	60	45	74	45	74	32	61	48	49	55
TATCTGAATCCAAGTA	alt_5019_upstream	86	121	111	86	76	83	94	78	96	88
CGAAGAGTGTCAATAT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
ATTCAAACGCCACTTC	alt_5019_upstream	5	9	14	7	7	7	10	7	12	4
GGATGTGGTGTGGTCA	alt_5019_upstream	0	4	2	0	12	4	7	1	3	1
AGCTTTTTCTTATTTT	alt_5019_upstream	123	93	147	142	114	107	119	136	111	113
CTTTTCATACCTTTGC	alt_5019_upstream	71	85	81	81	108	49	90	59	86	64
TGCTTTATGAACTGCA	alt_5019_upstream	12	23	24	15	19	17	24	16	23	11
ATGAACATTGCCCGCT	alt_5019_upstream	0	1	1	3	1	2	1	1	0	1
TTGGCACGCCATTGAA	alt_5019_upstream	51	40	68	49	41	46	46	56	59	53
TTCTCTGTCTAACAAG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCCTCTTGTGTGG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCGTCATGTTGGG	alt_5019_upstream	80	93	127	94	76	97	87	78	96	68
GCGGCTATCGGGCTGC	alt_5019_upstream	4	1	2	3	0	1	1	3	0	3
AACGGACTCCGTACGG	alt_5019_upstream	74	71	80	82	79	64	84	52	65	64
ATCCTTGGCCGGCCAG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCTAAGGGATTGAGGC	alt_5019_upstream	67	65	75	59	47	50	62	55	66	51
TCTCTGGGCTCCTCTT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTCGAGTACATCA	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTCGTATTTGTTC	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
AATTCTTAGGAGCATC	alt_5019_upstream	22	42	48	39	34	27	37	20	51	27
TCTATCTAGCATTTAC	alt_5019_upstream	45	46	41	40	47	45	35	46	49	21
GGGCCAACCGTTTCAG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
ACATGTCTTGGCGATT	alt_5019_upstream	6	6	7	9	3	3	4	4	11	3
CGGTTTTTATCATCCA	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
ACCTATTGTAACCACA	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCAAGATTCGGGA	alt_5019_upstream	54	56	69	63	41	52	63	42	45	58
AATTAAATCGCCACTA	alt_5019_upstream	51	45	45	53	32	42	50	47	36	51
CCTTATCGCGGCCCGT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
CGTCACCTTAACTCCG	alt_5019_upstream	12	26	16	19	26	6	29	20	19	10
ACTTGAAACTTAAATC	alt_5019_upstream	26	17	30	17	22	19	30	23	16	31
CAAACGCTTCCTGCAC	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGTGTAATACTG	alt_5019_upstream	10	14	18	13	6	17	11	12	8	6
GTTGTACACAGTTTCA	alt_5019_upstream	39	37	41	44	25	21	37	48	32	24
TACCGTCTGTGTTCGG	alt_5019_upstream	30	31	36	42	37	30	36	36	34	46
AGGTCGATTTTTGATC	alt_5019_upstream	15	38	28	34	25	22	28	25	33	30
AGGGCACCGGGCTAAT	alt_5019_upstream	36	26	36	46	21	34	28	27	31	31
GGGTGCCACGGTAATG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCTTGCTCGCTTG	alt_5019_upstream	44	42	75	56	58	57	52	48	53	27
CAGGGTCACCGCCGAT	alt_5019_upstream	13	12	14	10	20	13	15	15	19	12
AGTTACTGACCATTTT	alt_5019_upstream	38	51	63	57	45	68	47	54	63	42
TAAATGTCACGGTTAA	alt_5019_upstream	48	47	51	43	42	42	51	43	47	29
TCTGGTCGTCCCGTTG	alt_5019_upstream	18	21	32	34	20	14	28	20	29	25
CGTCAATCCCGTTCGT	alt_5019_upstream	5	5	15	4	4	8	14	2	10	5
CGCCTTGGTAGCGGTG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTCGACTCTTGTC	alt_5019_upstream	52	51	46	49	61	36	64	40	64	51
ACCTCCTCGTACCCCG	alt_5019_upstream	30	37	41	27	40	16	31	26	42	23
TTTACTATATGGGATG	alt_5019_upstream	30	37	22	30	36	37	25	34	22	19
GTTCCAGTCCCCTGGG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
GACTGCTTACGGTAAT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TCAATTTTTTGTCAGC	alt_5019_upstream	35	54	55	58	53	39	39	47	51	45
CTTCCTCAGGTGTCTC	alt_5019_upstream	32	42	44	34	57	31	58	28	43	30
ATAACTATTTTTTACT	alt_5019_upstream	36	26	46	27	30	34	42	39	37	29
CAGCACTGAACTAATG	alt_5019_upstream	169	196	203	175	207	162	212	170	225	158
GCTGAGTATGGATTTA	alt_5019_upstream	86	87	118	96	83	110	92	83	121	76
CCGCCTGCTAGGTGTT	alt_5019_upstream	6	8	11	11	7	11	7	9	12	7
CTACCCCCACTACCGT	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTAACTCTTCCG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
AACCCTAATGCCGAAG	alt_5019_upstream	218	267	306	243	235	199	219	224	274	221
AGGTCCCAAATTCCCG	alt_5019_upstream	71	55	85	64	58	71	56	70	41	61
TAGGACACAATGTCTG	alt_5019_upstream	30	20	51	35	22	37	28	30	37	28
GCCTCAGCCTGTAAAC	alt_5019_upstream	77	141	93	96	121	73	133	75	128	67
CTACAATTTATTCATA	alt_5019_upstream	37	31	52	37	47	31	33	40	33	26
TCGTTCGAGCCACATG	alt_5019_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTCCCTGTCAACG	alt_1095_negative	26	16	27	19	25	16	24	27	25	22
CCATAGGCCTATGCTG	alt_1095_negative	12	16	16	20	17	9	23	15	28	9
CTACGAAAAACAAATC	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
GTCTACCCCCGGTGGC	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
CCTCTTCCCAGGGACT	alt_1095_negative	10	14	22	8	11	24	8	16	14	11
AAAAGTAGTTTCAGGG	alt_1095_negative	33	27	43	28	24	28	32	32	33	30
CCTAAACACAAACCTT	alt_1095_negative	18	15	38	30	31	21	20	18	11	12
TGGCACATGATTATTT	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
TCGTGGATTTGCGCTA	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
GTCATTTCCTGAGGCT	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
AGTTTTGGTTCCTGGT	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
TTCGGCAGCTGAATAG	alt_1095_negative	35	37	42	40	44	51	39	39	49	25
TTCGCGATATCTGTTG	alt_1095_negative	39	26	51	59	45	31	50	38	42	26
TTTAGACTGGGCCGGT	alt_1095_negative	45	43	57	54	49	54	68	49	54	51
TAAATGCACCCTGCTT	alt_1095_negative	31	28	39	41	29	23	42	21	43	19
CTGCTCTGCTCCTCGG	alt_1095_negative	30	37	57	44	24	32	36	24	34	54
CAGCGTGTCCATACCT	alt_1095_negative	15	25	25	18	33	11	24	17	35	16
AAAAGACTTTCGATAC	alt_1095_negative	95	88	124	95	72	88	71	85	100	66
TACCTTGCGCGTGCCC	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
AGTCCAAATTCAGAAT	alt_1095_negative	8	12	17	10	12	14	17	12	20	10
CATCGTTCGGCTCCGA	ref_1095_negative	13	17	16	13	7	16	10	11	10	13
TGGAGCAATGGCACAT	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
GGCTACGTGCAAACAA	alt_1095_negative	13	19	25	31	27	28	21	22	32	25
CCGCCTCTAAACTGCG	alt_1095_negative	0	10	8	4	2	4	3	2	3	3
GTTTCTTACCGCCTCG	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
TCACAAGTGGGGCAAG	alt_1095_negative	70	66	56	50	53	46	62	69	58	40
GATCTGGTCTCGGAAT	alt_1095_negative	27	25	36	29	26	24	23	20	29	24
GCTTTATTGTTTCACA	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
TTTCTTAATCCAGGAG	alt_1095_negative	17	9	26	24	18	10	15	29	15	23
AATTAAATATACATTC	alt_1095_negative	88	68	93	69	75	66	68	68	67	69
TAAGTACTCTTAAGTT	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
GTACTCGCCATGTAGA	alt_1095_negative	82	61	62	84	67	59	51	59	52	61
CTATGTCCTACAGTAA	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
TCCCAGCTCTTATCAG	alt_1095_negative	30	43	39	33	25	35	34	27	35	38
TCCAAGTGTGGTCTTG	alt_1095_negative	45	44	55	48	36	51	49	48	56	44
TTGCTCTTTGTTTAAC	ref_1095_negative	13	13	17	12	9	20	14	20	18	13
GGGCACGTGACGACGG	alt_1095_negative	62	39	72	66	52	50	47	56	51	42
CTTTCTTAGTTTCCTA	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
GCAAAGACCGTCTACG	alt_1095_negative	26	39	41	27	33	39	36	23	26	11
TCCTAACTTCAACCGG	alt_1095_negative	7	9	15	12	7	7	7	9	14	6
CTAATGACTGTCATGT	alt_1095_negative	9	10	14	8	8	18	2	5	10	12
TTGTTCACATTCGCCT	alt_1095_negative	15	19	24	25	14	16	14	16	18	19
TATCCCACCAAGTCTT	alt_1095_negative	1	10	19	13	15	10	8	11	7	16
TTCACGATCCTTGGTT	alt_1095_negative	4	12	8	10	11	5	5	8	17	13
ATCACTTAGAGCTTGC	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
TCAGATTCAGGGGCAT	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
CTAACGGTGGTCCATG	alt_1095_negative	18	21	39	29	28	27	25	26	16	22
TGAAAACCCTTTTGCA	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
CTTGTTCTTCGCCGTG	alt_1095_negative	18	20	22	37	30	23	33	32	22	19
TTGGTAGTTGTGTAGT	alt_1095_negative	47	72	62	73	51	47	63	45	82	68
CTGTGTTCACCCACCC	alt_1095_negative	14	12	6	17	11	14	14	24	12	10
GAAGTATCGGTGCCAG	alt_1095_negative	10	4	3	8	13	11	12	7	17	7
CTGAGCAAGTGCTTCT	ref_1095_negative	81	87	94	102	64	72	66	83	91	82
TGCTTTATCCTTTCCC	alt_1095_negative	29	20	48	39	26	27	26	31	40	27
GCGTGGTAGGTGTGAA	alt_1095_negative	75	115	120	84	87	76	94	73	108	77
ATTTGAGCTTTCTATG	alt_1095_negative	40	29	53	45	47	43	57	43	43	44
CTGTATATGGCATAGC	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
CCCCTATGTACGCAAC	alt_1095_negative	12	13	17	10	11	19	17	18	16	15
ACTAATTCGGGGTTGA	ref_1095_negative	59	55	80	72	81	75	51	67	72	65
CCGCTCATTCATGGGT	alt_1095_negative	27	47	29	35	38	27	41	35	43	29
CCAGTTTCTGTCAGTT	alt_1095_negative	15	95	27	31	79	25	79	31	89	11
TTTCTCGGCCGGGGAA	alt_1095_negative	9	8	13	17	6	14	8	10	17	7
ACGTATTCTTTTGTTC	alt_1095_negative	119	106	137	137	128	134	150	139	148	101
CGACGTGGTGTTATGG	alt_1095_negative	15	21	35	26	24	18	27	15	13	12
GTAAAGTTACGCTAGG	alt_1095_negative	0	0	0	0	0	0	0	0	0	0
TAGCCGGTAGGGTCGT	alt_1095_negative	3	2	4	2	1	5	2	7	6	2
CGCTTATTGATCACGA	alt_1095_negative	23	16	35	25	28	27	27	26	21	21
CAATCGAAGCTATGTG	alt_1095_negative	12	4	13	7	9	12	9	9	6	8
ATTTTAAGGACGCTAA	alt_1095_negative	6	10	11	11	4	14	6	7	13	3
CAGGCCCGCCCCGTAA	alt_1095_negative	10	8	13	14	17	13	12	8	11	12
CGCCCGCTTGCTCTAT	alt_1095_negative	13	8	11	10	14	10	13	6	10	18
TAATCTATAGGGTTTT	alt_1095_negative	298	181	391	278	142	319	178	210	212	255
TGAACCACTGCTTCGG	alt_1095_negative	48	26	42	41	50	43	39	35	33	27
CCTTAATATCTCGCCG	alt_1095_negative	20	17	24	22	24	20	23	30	19	20
CTCACCGAGTGTCTTA	alt_1095_negative	15	7	9	13	12	6	8	11	7	11
ACAGGAAAAAGATGGC	alt_1095_negative	38	18	42	26	30	28	18	22	12	26
GTTTGCTGTAGGTTTG	alt_1095_negative	3	12	11	11	6	12	9	6	10	13
CCTGCGTGGGCTGAGT	alt_1095_negative	18	21	35	32	21	17	23	17	21	27
GCTAGTGATACGTGTG	alt_1095_negative	89	54	89	70	80	66	60	63	71	54
TGTTGAACGTCTTCTC	alt_1095_negative	6	8	7	8	12	13	21	12	11	9
TCTGCCTTCGATTTCA	alt_1095_negative	95	109	157	137	100	105	104	116	106	104
TCGTCGGAGCACGGGG	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
CACCACGTAGGATAGC	alt_4926_RC	17	7	11	15	14	9	11	20	16	8
TTTGAGTCACCGAGGG	alt_4926_RC	68	38	66	56	51	63	39	56	53	52
GCCGTTCCAACGCATG	alt_4926_RC	82	81	106	66	71	91	92	88	72	82
TGTTATTATCTGCGTA	alt_4926_RC	10	7	16	8	15	6	4	14	8	16
GAATGTAAGTCAGCAC	alt_4926_RC	35	15	26	12	20	19	11	14	14	19
ATTGAGCCGATGTGCG	alt_4926_RC	45	34	59	50	35	43	29	31	42	37
CGCCATCGTTCCCAGA	alt_4926_RC	33	13	30	34	17	16	19	25	21	18
CACTGGGTATACCGAC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCCTCGTTTGGT	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GATCATTCTCGGTTAG	alt_4926_RC	131	110	185	162	113	157	100	129	126	126
ACCACTTTACCGCCAC	alt_4926_RC	12	16	19	11	15	7	15	14	8	9
GGGAAGTTTTCAATAG	alt_4926_RC	205	160	254	194	167	191	170	194	177	198
CTATTCCAGTCCACCC	alt_4926_RC	14	17	34	24	20	11	12	22	7	11
TAACCCATTGTCTCGG	alt_4926_RC	9	10	10	15	7	7	4	13	15	15
CACTCCCTGCATTCAC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GTTAGCAATTGACGAC	alt_4926_RC	0	2	1	3	3	3	3	4	1	3
TGATCCCCCTCGGTAG	alt_4926_RC	21	13	33	14	16	15	28	12	29	19
CTTGAACTGGCTTTTT	alt_4926_RC	22	17	31	20	16	21	9	24	17	18
CGGCAGGGGGTCGTCC	alt_4926_RC	165	111	233	187	134	170	132	154	147	173
CAGTTACTAGATCTCG	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GCATCCATTGTGTACC	alt_4926_RC	120	119	169	176	110	144	106	126	126	131
TATACTACGCAGGTCT	alt_4926_RC	6	5	5	2	3	4	13	2	3	8
TCATTACATTTCGCGT	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GTTGCATCGTGCTTAA	alt_4926_RC	48	36	65	43	65	66	50	40	52	49
GGGATCATTTCGGTTC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GATGTCAAAGCTTAAG	alt_4926_RC	178	142	204	177	116	159	121	136	156	143
TTCATACAGCGGCTCT	alt_4926_RC	82	45	70	58	50	69	55	41	60	65
TACGATTGCCAGATAT	alt_4926_RC	128	80	127	123	89	89	81	114	94	111
TCGACACTCGAGGTGC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TTGGGACTCATAGGAT	alt_4926_RC	25	20	18	16	21	13	22	14	17	29
TTTCGGCCTCATTTAG	alt_4926_RC	11	20	19	14	6	16	16	10	7	15
CAGTAACGATAATATG	alt_4926_RC	141	116	183	154	113	158	106	137	123	121
TGGGAAGTCTTTAGGT	alt_4926_RC	26	17	17	16	19	24	18	17	21	30
GAATAACTCACTTCCC	alt_4926_RC	124	92	137	97	91	92	96	97	123	78
AGTCACTCTCTGATGG	alt_4926_RC	17	19	25	9	6	17	20	16	13	18
TCTGGTATCGGCATAT	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TCCCAGCCTTTTCAAA	alt_4926_RC	3	7	7	3	8	2	4	7	4	2
TACGCGCTTCTTCGTG	alt_4926_RC	42	44	64	62	41	41	37	55	27	40
AGTCATACGGGCGCGT	alt_4926_RC	33	41	57	48	38	49	27	40	24	33
TAAACGCCATGGACGT	alt_4926_RC	13	7	25	19	10	9	9	12	9	16
TAGGCAGCTTCATCTA	alt_4926_RC	56	24	53	58	31	48	41	57	47	61
AATTTTTGGTCCTCGC	alt_4926_RC	4	2	6	4	2	6	3	5	5	4
GAGCTTTCAAAATTGA	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
CTTCCGGCTCCTCACG	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
CCAAAGATCGGTACCT	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GGATAAATTAAGATAC	alt_4926_RC	57	42	39	46	48	53	66	41	42	46
TACTTGTTTTTTTCTA	alt_4926_RC	113	70	145	115	75	106	75	96	78	122
TCTCCAATGTAATTTG	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GATGTTGTCGCCTTTG	alt_4926_RC	1	0	0	0	0	0	0	0	0	0
TCACGGTAAATGTAAT	alt_4926_RC	36	21	35	42	26	32	27	34	26	27
TTGTTTAGTCACAATG	alt_4926_RC	8	4	8	9	6	10	16	8	4	10
CCGACGGCAATGTACC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GCGTTCAATCACGACG	alt_4926_RC	64	40	74	74	42	40	46	49	38	55
CGCACGTCTATATTAC	alt_4926_RC	15	26	14	16	27	16	22	17	33	18
TGGTCCTAGACAGCGA	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
CGCCAGCCATGTTTAG	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
AAGAATACAGTGTTGG	alt_4926_RC	6	4	7	7	7	4	6	5	9	8
TGTTAACTGGGTAGGT	alt_4926_RC	22	23	36	19	20	17	19	14	17	19
ACTAATACCGGTTCGC	alt_4926_RC	52	44	70	45	53	54	66	49	50	62
GACATAAACCCGCTAC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GCTTTTTAGCAATAAC	alt_4926_RC	4	6	5	3	6	2	9	2	3	3
TCGGGTTTATTTGGAG	alt_4926_RC	46	35	52	52	38	45	27	44	41	40
CAAAGAGCGGGACTGC	alt_4926_RC	25	13	15	8	7	17	8	9	6	5
TCCTGTACCTTACCTA	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TAGTCAGGGGGCTTAA	alt_4926_RC	28	16	30	19	16	17	26	12	27	23
GTAGCTCACTAGCCAG	alt_4926_RC	19	20	18	17	19	19	12	18	18	23
TAATAACGTGAAGACT	alt_4926_RC	23	19	29	31	21	27	21	31	22	32
GGTCGTACTTGGGCAA	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTGTTATCATAA	alt_4926_RC	24	23	22	21	12	12	14	21	19	15
AGACTCAGTTATAATA	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GTAAAGGTATATGAGA	alt_4926_RC	51	41	57	49	43	52	39	61	39	54
CGCCCAATGCCAGGGG	alt_4926_RC	26	23	36	28	13	18	18	20	27	27
GACAGTTCATAATCAT	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
CTTCAGGTCACAGATT	alt_4926_RC	0	2	0	2	3	1	3	2	4	1
TTAGTATGCCGTCTTG	alt_4926_RC	79	83	136	134	71	90	85	87	78	92
GGATTCATATTATGGT	alt_4926_RC	166	122	203	152	80	151	136	157	130	151
TCATTCGGCGTACTAT	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TCGTTACATTCTTGAG	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TACATGGTATTGACTG	alt_4926_RC	52	46	62	63	44	47	40	60	51	35
TAACATATTGGCTTAG	alt_4926_RC	30	19	20	14	16	16	6	22	20	18
TTGGCACAATTATACG	alt_4926_RC	23	16	27	20	9	20	18	19	14	14
ATATCCGCTGGTGTGG	alt_4926_RC	148	109	179	144	146	133	108	120	127	119
TTTGTTCTTATAGGCT	alt_4926_RC	31	15	26	38	19	22	34	26	27	25
CTGTACTTCGTAAGTC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
CGTTCGACCTTTTCAT	alt_4926_RC	31	37	33	36	35	23	40	26	33	32
GTCTGCGATTTTGTAT	alt_4926_RC	60	45	82	51	47	40	38	50	46	63
TCACGTACTTCCCGCC	alt_4926_RC	53	35	46	50	43	52	37	33	35	52
TCTCGTGGAATTGCGT	alt_4926_RC	12	7	24	16	10	10	13	15	7	9
GTCCATATTAGGCAAA	alt_4926_RC	53	34	64	53	38	39	37	56	52	43
TGTGCTAACTCTGAAT	alt_4926_RC	16	14	13	5	14	17	14	12	4	15
GATGTTGTTGCCTTTG	alt_4926_RC	76	44	86	82	56	88	51	76	79	75
TGTTGGCCCTGAACGG	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
GCAGCCCGCCAATTTA	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TATAGTGTTGAGAATC	alt_4926_RC	0	0	0	0	0	0	0	0	0	0
TCGCGGATTTGTTGGT	alt_4926_RC	2	1	0	0	2	1	0	1	1	0
CTATGTGGCTGTGCAA	alt_5850_new	5	10	5	6	15	4	10	3	8	7
GATATGTTTTGTACTT	alt_5850_new	25	47	35	17	67	22	49	21	64	19
TAGCTGGAAGCAGGAC	alt_5850_new	0	0	0	0	0	0	0	0	0	0
CGCTTCCCGTTATGAT	alt_5850_new	0	0	0	0	0	0	0	0	0	0
GCAAAAACACCCCCCT	alt_5850_new	9	8	2	1	4	0	4	2	7	0
GAGCGAGCTATGTATC	alt_5850_new	13	23	14	27	17	12	26	21	24	16
CCGGAGTAGATCTACT	alt_5850_new	0	0	0	0	0	0	0	0	0	0
GTCGCAGGAATCGTGC	alt_5850_new	5	7	9	4	4	3	15	3	7	1
TGAATGGGTCTTGCTA	alt_5850_new	64	120	77	74	120	61	138	63	120	45
AGTTATTAACTGGATA	alt_5850_new	30	64	38	30	60	31	66	27	68	29
GAGCTTTTCTTATTTC	alt_5850_new	0	0	0	0	0	0	0	0	0	0
AAAGCGAGGAGTTCCT	alt_5850_new	10	17	10	10	13	3	18	6	16	5
CCGCCCCAGTGTCTCA	alt_5850_new	0	2	1	2	3	3	2	2	3	2
TATGCCTCATCATTCA	alt_5850_new	16	14	12	7	28	14	25	18	17	12
CTCTGCAACGTCCATT	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TCCATGCAAGATTTTT	alt_5850_new	0	0	0	0	0	0	0	0	0	0
GCTCCGTAAATAACAT	alt_5850_new	33	57	26	52	78	24	79	33	63	33
TGTCCTACGGTTCCTG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
GCGGCCCTGTTCAAAG	alt_5850_new	30	25	28	25	44	11	42	33	44	21
TCCTCCAATCTTGTTG	alt_5850_new	5	9	15	4	14	9	12	4	14	9
ACGGCCTGTATATCTA	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TGCGGACGCAATAACC	alt_5850_new	39	36	23	13	33	14	38	24	46	17
TCGTCGGGTTTCAACC	alt_5850_new	11	41	10	9	34	15	27	14	39	12
ATAGTGCGTTTTACCT	alt_5850_new	1	3	0	4	4	0	1	1	0	3
GCTAACCCGATAAGCG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TGTGCTTTCAACCCGG	alt_5850_new	13	36	11	29	31	15	39	11	30	5
CTGACCCGGGTGTCAT	alt_5850_new	30	61	44	26	58	26	63	41	62	27
CCTCCTGCTATAGGCT	alt_5850_new	22	80	21	25	59	21	57	25	101	25
ATTCTGCCACGTCGAA	alt_5850_new	0	7	2	2	5	4	3	4	7	1
GGATGGTGAAGTGGAG	alt_5850_new	12	14	12	13	15	13	34	8	25	6
GGACACATGGGCGATT	alt_5850_new	17	25	22	15	21	22	26	13	23	9
TGGGTCAACAGGACTA	alt_5850_new	5	6	10	6	10	10	6	4	16	4
TATGCTTGAGGCTTAA	alt_5850_new	10	13	13	6	19	4	22	11	20	9
TTCAGCGGCGCTCGTT	alt_5850_new	4	7	7	4	9	2	11	0	6	0
AAGTCAACAAGCGTTG	alt_5850_new	6	32	18	7	28	14	24	14	29	9
CCCAGAAGCAGGTTTC	alt_5850_new	15	22	17	20	17	9	26	17	33	9
GGGCGCCTTCATGGTG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
ATTTGGATGTAAAGGT	alt_5850_new	1	0	3	0	1	0	0	0	1	0
TTCTACCAGTTCCTCT	alt_5850_new	0	0	0	0	0	0	0	0	0	0
CAGTGAGTGCCATGAA	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TTAGCTTGTGCGATCC	ref_5850_new	44	72	44	42	73	38	69	33	65	44
CGTGTTGTACTGCGTC	alt_5850_new	15	26	15	11	29	9	27	12	21	7
TTCGGCGAGGTACTAA	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TCCAAAATGCCTCTTG	alt_5850_new	6	17	6	12	12	4	23	4	14	6
TCTGTTTTCTTGCAAT	alt_5850_new	117	210	122	95	222	120	213	97	246	92
GCCGACCTTCTCGTCT	alt_5850_new	8	11	7	1	33	8	10	4	13	6
CTTACTAATCGAATTG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
ATGGGTCTATGAGTTG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
CCGCTCTGTTATCAGG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TGTAACTATCCATTGA	alt_5850_new	10	12	3	3	9	3	16	5	10	7
ACAACTACAGTTCCTT	alt_5850_new	0	0	0	0	0	0	0	0	0	0
ATGCTACTTGCCCATG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TTTGTTTGCCAATAGT	alt_5850_new	24	59	29	36	59	29	78	25	63	26
CAGCCAGCCTCTAGGT	alt_5850_new	4	10	3	2	12	5	15	8	14	6
TGATACAAGGTCTATT	alt_5850_new	2	2	0	0	0	0	0	0	0	1
CTTTGTTCGCGACATT	alt_5850_new	17	26	15	14	27	14	32	16	32	13
AAGTTACATAAGTTGA	alt_5850_new	14	23	7	10	26	10	19	9	18	12
GGTGTCCAGCATTAGG	alt_5850_new	15	26	29	14	34	19	47	17	30	22
CAAACAACTTCACAAA	alt_5850_new	53	91	62	40	63	62	97	46	83	44
GGCCTGCGTATCAGCA	alt_5850_new	11	31	29	22	28	12	24	12	36	16
GTCTGCGTCTTTAGCT	alt_5850_new	69	122	98	76	139	68	140	73	156	70
TTCGAACGTTCGTCTG	alt_5850_new	24	77	40	26	105	30	73	33	89	22
TAGCGACAATTACTAC	alt_5850_new	86	132	75	57	133	65	128	68	134	68
TATCTGTGGCTATCAG	alt_5850_new	7	11	7	10	21	7	20	8	23	8
AGCTGTATAACTGGCC	alt_5850_new	51	62	26	33	56	27	59	37	39	30
TACTCCAGATCTTAGG	alt_5850_new	11	32	13	11	17	3	14	6	20	9
GTTGCTCCCCGCAAGT	alt_5850_new	0	0	0	0	0	0	0	0	0	0
TCATGCCTATTCAAGT	alt_5850_new	12	18	13	9	30	16	12	17	12	21
GTAACTTTTGATTGCG	alt_5850_new	0	0	0	0	0	0	0	0	0	0
GGGGTTGCTTGGCCTA	alt_5850_new	8	10	0	1	2	3	20	2	7	1
TCGGTTAACAGTGACG	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCAGGTAAAAGGA	alt_1687_upstream	2	4	7	7	1	1	1	2	2	4
ACTCCAACTTGTCAAT	alt_1687_upstream	26	32	22	22	24	23	28	20	28	20
GTCAAACTCGTTATTT	alt_1687_upstream	50	15	51	47	38	37	47	36	22	34
GGAAAAACGTGAGCAG	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
AAACAGTCTCTCGCGA	alt_1687_upstream	50	35	68	42	36	44	41	49	44	31
CTCGCTGTGTAAACGG	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
CCATTAGTGTCTACGA	alt_1687_upstream	12	26	33	18	20	26	19	22	25	26
TCATTGTGATTCCTCC	alt_1687_upstream	34	21	32	29	15	29	25	26	12	21
CTAGGGCTTCGACTGG	ref_1687_upstream	27	11	23	23	28	23	17	17	24	18
CCCTTGCTCATGTTAA	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGGCCTATTTTTT	alt_1687_upstream	7	4	8	4	8	8	6	8	7	8
AGTAGCCAATGTTCTA	alt_1687_upstream	16	15	23	19	16	13	18	21	10	14
CTATCGTACGGCCCAC	alt_1687_upstream	13	7	13	6	14	10	5	4	8	8
GTTCTTTAGTGCCAAT	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCGTCCTTGGGC	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
AGCGCTTTGGACCTGG	alt_1687_upstream	17	22	32	24	27	17	34	22	23	27
TAATTAGCTTGGTCGC	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
AACCTTAATTGTGCAA	alt_1687_upstream	47	84	74	67	73	63	48	56	56	47
TCATGTGGTCATGACT	alt_1687_upstream	1	1	2	1	1	4	5	3	5	0
TGTCTACAGATGTTCA	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
ACCAGTTGCATCTGTC	alt_1687_upstream	14	8	9	11	17	16	7	11	15	9
TACGTTCGCTTAAGGT	alt_1687_upstream	6	10	11	13	5	9	5	7	4	8
CATCCAGGTGTCCTTT	alt_1687_upstream	6	10	21	20	9	18	18	10	7	15
TATCTCTGGTCACTGT	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
TGTACTTCAATTCTCA	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCGGTCTCGATTT	alt_1687_upstream	10	9	12	11	8	8	12	13	7	15
TGTTACTTATATACTG	alt_1687_upstream	0	0	0	0	0	0	0	0	0	0
CATGTGATTATTGTAC	alt_4684_RC	16	10	8	8	13	7	15	7	16	3
TATTTGTGAGGGGATG	alt_4684_RC	24	19	20	17	12	14	16	15	29	15
TTTATAGGTTTTCCCT	ref_4684_RC	19	21	18	19	19	16	34	13	20	14
CCCCGTGCCATACGCT	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
CGAAAGAAGGGCTACG	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
CTTGGTGTATTTTTCA	alt_4684_RC	21	27	35	27	44	22	24	31	19	30
ACCACTCTTGCTTAAG	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
CACCGTTGTATCTCTG	alt_4684_RC	20	15	19	20	23	11	14	9	15	10
TAAAGTCACAGGAGAT	alt_4684_RC	12	24	12	15	23	16	29	10	22	10
AGACCTTGCTGTGCTT	alt_4684_RC	110	148	132	115	149	134	142	110	165	111
CTCTATGGACCGCGTA	alt_4684_RC	159	154	172	183	206	168	178	147	217	146
TTTGGTGTAAGTTAAT	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
AGAACTTACATTTAGC	alt_4684_RC	0	1	0	0	0	0	0	1	1	0
ACTTAACCATCATTGA	alt_4684_RC	22	20	12	15	18	19	21	13	22	16
CGGAGTGTTTATAATC	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
CCTCTGAGGGATGTTT	alt_4684_RC	33	37	43	44	56	45	58	50	48	32
TCTTTTTGCTATGGTA	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
GGGAAACATTCGCCGT	alt_4684_RC	36	22	30	23	21	31	32	18	35	22
GGTACCAGTGTTCCTC	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
GCATAAGAAGGCTTCG	alt_4684_RC	83	112	143	137	150	127	145	119	153	100
TGATAAATTTCTTTGA	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
CAGATACAGCCACCTC	alt_4684_RC	27	48	33	26	27	45	40	34	38	28
CGTGATCGCCTCCGCA	alt_4684_RC	46	57	71	48	57	48	62	52	60	41
TGTTGTCATTACTGAG	alt_4684_RC	36	32	52	43	31	27	22	26	34	30
TTCGCACAATTCGTTC	alt_4684_RC	55	58	64	51	53	40	60	68	66	44
CAGGAATTGCCTTCCT	alt_4684_RC	16	12	12	10	11	9	8	6	16	7
CTGTTACATCTCTTCA	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
TACGCCGCTACTATAC	alt_4684_RC	2	3	1	1	3	1	4	0	4	0
TGCTGCCGCTGGAGGA	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
ATGGACTGGTCGTCTG	ref_4684_RC	162	215	235	180	191	185	225	170	223	151
ATTGCTCCAGATAATG	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
AGCTACTTGCTCGGCC	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
CGAAAGTATATACAGC	alt_4684_RC	17	21	19	25	16	24	21	18	48	21
GTAAGCCCTTTGAAAT	alt_4684_RC	47	57	75	60	63	50	87	42	71	50
CTCCCCACCCAGAATG	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTTACGTCATAC	alt_4684_RC	5	11	11	8	13	4	14	2	13	14
GATTTGCATTGACTCT	alt_4684_RC	35	56	60	51	47	43	47	37	37	32
TTGGTAATTAACCTGT	ref_4684_RC	89	80	108	91	61	76	98	74	93	72
TATATTTAGGTTCGTG	alt_4684_RC	10	16	9	18	32	20	14	9	15	8
ACAGTGTTAGGGTTTT	alt_4684_RC	0	1	6	5	5	2	6	3	5	3
TATACTTAAATGTTTG	alt_4684_RC	100	117	125	107	109	102	130	110	120	82
TCGTATTGTACTATCT	alt_4684_RC	26	21	39	19	37	17	26	25	37	23
ACCTTCCGTCCTATCC	alt_4684_RC	20	39	19	12	44	9	36	9	38	20
ATTTGTTTGTGTTCGT	alt_4684_RC	12	11	16	17	17	6	12	7	14	9
AAACGTCGAAGTTTGT	ref_4684_RC	142	140	173	148	155	134	163	136	150	134
TCTATTCAGGTAGGTG	alt_4684_RC	250	249	322	302	223	283	252	280	245	252
TATTGCGTAATCCTCT	ref_4684_RC	30	35	36	36	23	29	33	24	30	42
GGTGATCGGGAGTATC	ref_4684_RC	156	171	175	168	141	133	186	155	157	127
TCACTCTGTGACCCAT	alt_4684_RC	37	49	31	47	41	27	53	37	59	43
TGCTGCTGCTGGAGGA	alt_4684_RC	72	78	102	76	95	71	100	73	88	74
TAATCTTCCAATCCAA	alt_4684_RC	18	23	18	19	14	17	14	13	18	16
ATTCAAGGTTTCGCAC	alt_4684_RC	18	13	29	22	14	15	21	14	14	15
AAGTTTGTAAACGTGA	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
TCATGATTTGATTGGT	alt_4684_RC	28	28	27	36	43	21	33	30	35	29
CACGGCGTATCATTGG	alt_4684_RC	92	118	98	105	98	98	126	103	130	90
AAGTCTTAGGGATGGC	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
GTCTTATCAGTATACG	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
GTCCATATCGAACTGT	alt_4684_RC	30	24	37	21	31	15	34	21	30	29
CAAAATTCCCGTCGCG	alt_4684_RC	10	12	18	12	11	15	11	16	16	7
ATGGCTCCGTCTGAGT	alt_4684_RC	46	46	88	55	46	60	53	50	59	45
CTTTATAGACCCGGGT	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
AGTCACTATTCATCGT	alt_4684_RC	0	0	1	1	0	0	0	3	1	3
ATGTGGTCTGCATGAA	ref_4684_RC	192	234	236	189	235	178	256	192	240	169
TTTCGGTCGTGATAGG	ref_4684_RC	45	50	53	58	57	50	54	44	48	38
TATATAAGCAGTACAA	alt_4684_RC	138	146	160	174	140	146	153	138	172	133
GCGTGGTAAGCAGGCC	alt_4684_RC	19	21	21	23	20	14	22	21	22	17
TGATCGCGCGTTGAAA	ref_4684_RC	58	47	64	43	49	45	54	37	52	45
ATTTGCATGTTTTAGA	alt_4684_RC	34	35	35	33	42	43	32	32	41	40
TTGTAACTTAAGGCTA	alt_4684_RC	18	30	31	20	36	33	37	35	38	18
TGGGCGTTCCCGCGGT	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
TGTGCTCGTAACCCTA	alt_4684_RC	73	67	76	74	72	70	62	72	81	61
TGTGGTTCTTCTGGAG	alt_4684_RC	7	3	6	6	1	1	2	1	11	5
GCGATTTCACACCTGG	alt_4684_RC	87	138	112	107	112	91	114	82	123	85
AGTTTATATTCAGAAG	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
GGCACTTCAATAGATC	alt_4684_RC	38	43	65	42	53	41	55	46	51	36
CTCTGAATTCAACGCG	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
AATTCTATAGACCCCT	alt_4684_RC	40	32	43	41	39	34	38	36	40	30
GCCAGGTCGTGGTTAT	alt_4684_RC	15	29	29	21	27	21	23	29	31	20
CGAAACTCTCGCTACA	alt_4684_RC	5	9	15	11	10	18	9	9	15	13
ATAGGTGTCGTTATGG	alt_4684_RC	39	33	39	31	31	34	37	37	30	25
TCATAGCTATAGGACC	alt_4684_RC	0	0	0	0	0	0	0	0	0	0
GAGGGAGGACATGTTA	alt_306_RC	71	44	74	75	34	52	53	57	38	54
CGTTATCGTATTCTCT	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GCGGGTGCCTTTCCCA	alt_306_RC	8	9	10	18	7	7	11	0	11	7
GAGCTACGAGATTCTC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GTCACAGGTTGTGTTA	alt_306_RC	8	5	4	5	6	1	9	3	7	7
CCCGGAGTTAAACGGG	alt_306_RC	9	11	5	1	3	11	4	3	6	5
TGAGGGCTGTTTCCAC	alt_306_RC	20	18	30	22	12	39	23	26	20	24
CCTCCAGACTAACTTG	alt_306_RC	75	60	84	65	51	49	44	60	69	37
TGATGTCATTTTCAAT	alt_306_RC	4	1	0	1	2	2	0	5	1	1
TAGCCTGCTTTACGGC	alt_306_RC	26	57	48	46	50	39	42	32	39	37
TTTTAAGAATGGCCAC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GAACGTGCGGCTGCCT	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TTAGGTAAAAGGCTCC	alt_306_RC	34	32	29	45	24	30	31	15	33	25
TTCGTTTTGTGTGCCT	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TATATCGAGACAACTC	alt_306_RC	248	258	295	261	222	254	256	229	234	210
GGTTTGCACGAAACTG	alt_306_RC	8	6	9	10	8	12	14	8	16	12
TGGGGGTCTCCGCTCT	alt_306_RC	60	40	72	66	45	53	43	48	53	53
TTTCTACAAACCCGTC	alt_306_RC	50	38	43	35	42	38	46	26	38	37
CAGTTCAGTTCGTCTG	alt_306_RC	25	28	25	18	26	24	23	31	41	17
ATCCTAGCATCTTTCA	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TTTGTGTAAATTTGCG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GCGCTACGGGCATTTT	alt_306_RC	0	0	0	0	0	0	0	0	0	0
ACGTACCCCCCTCTAG	alt_306_RC	6	7	3	5	12	2	16	7	15	6
CGGCTCTTCGATCGCC	alt_306_RC	68	46	75	70	80	73	63	67	74	72
TCCCAAAGTGTGACAA	alt_306_RC	42	42	51	35	58	43	61	29	52	31
ACCTCTAATGATACTC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
AGGGTTGGTCCCTTAA	alt_306_RC	0	4	4	7	2	7	2	4	12	2
AGAAGTATCGACCTCT	alt_306_RC	24	32	41	23	39	41	29	35	31	32
TCCATCGCCATGAAAA	alt_306_RC	0	4	6	4	1	2	1	1	5	1
CCGTGCTAATTTACGG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCCGTTCACTAC	ref_306_RC	188	203	226	209	189	199	189	185	211	189
GGCACGCTCGGAGTGC	alt_306_RC	105	87	103	104	84	90	94	84	103	76
ACACCCTCCAGTTCTT	alt_306_RC	0	2	2	3	0	3	2	4	1	5
TCACATTTTTAGCGTT	alt_306_RC	91	90	107	78	107	94	80	74	103	81
TGATGGGACCATGATA	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GATTCTTCGACTCAGT	alt_306_RC	10	6	7	7	13	3	2	8	9	8
CTTAGGGAGCGTGTCC	alt_306_RC	18	15	26	24	20	20	20	12	20	25
TTGTTTTCCATGTCAC	alt_306_RC	59	60	57	52	45	70	53	59	45	46
GTCCTGTTTAAGGCCC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TTTGCATGTTTTCTTT	alt_306_RC	50	26	42	42	31	36	39	46	26	24
ATATGGTTCGTCCACC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
AATACTCATCCCTGCC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
CTGTTGGGAGTATAAG	alt_306_RC	1	4	1	1	1	3	4	3	5	6
GCACTCTTTATCTTCC	alt_306_RC	0	0	0	0	0	0	0	1	0	0
AGGGGACTACAGTGTA	alt_306_RC	106	85	125	115	82	66	63	75	85	96
AGACACCAGGCACCAT	alt_306_RC	24	18	29	21	17	19	13	22	18	31
CCCCGACTTCTGATGT	alt_306_RC	35	22	42	34	31	31	43	29	38	35
CGACCCTCTGGCCTCT	alt_306_RC	18	37	28	28	44	17	38	18	36	22
GGGCGAGACTTCAGTG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTATCCGATCTG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TAAGCTTATTGCCAGT	alt_306_RC	47	38	45	39	30	34	35	26	46	32
ATATGTTTCGATTCTC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TATTTACTCGCATGTA	alt_306_RC	71	61	75	82	70	79	69	54	82	61
AGAAGTATCGCCCTCT	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GTCCGACTTAGCGTGC	alt_306_RC	16	17	11	4	12	11	18	7	20	11
GTTAGTGCCTGGAATG	alt_306_RC	18	25	22	17	17	26	20	17	25	17
ATCTCTGTCTCTTATG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
CGAGTAGAGCTGTGTA	alt_306_RC	5	10	11	13	14	7	10	13	11	2
GAAAATCAAGCTGCGC	alt_306_RC	54	53	53	46	50	45	38	30	36	59
CTCTTGACAACAAGTA	alt_306_RC	3	4	4	2	5	5	7	2	1	5
GCTACCTCGCTCGGGC	alt_306_RC	76	76	95	78	89	68	77	88	87	48
CCTTTCTTACATTCTG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
CTGACTAACTACGGCT	ref_306_RC	16	21	24	16	17	19	35	17	25	21
CAAGAGGTCACGCCAT	alt_306_RC	11	17	17	14	12	19	11	16	12	17
ATACCCATCTTCCAAC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TCCTAACAACGGCATG	alt_306_RC	48	68	77	80	61	49	58	53	72	46
TCGGGGGCCCTAGGGT	alt_306_RC	31	16	41	25	25	21	23	32	20	26
GGTATTATTGGAACAT	alt_306_RC	56	32	55	41	51	31	54	35	48	41
CCTAATACTCCATCGC	alt_306_RC	73	102	114	111	112	87	117	73	94	86
ATTAGATTCACCGCAA	alt_306_RC	22	18	35	12	31	14	16	22	19	25
GCGCGCAGTCAGGGAA	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTGGTTTGCTTA	alt_306_RC	42	45	93	37	47	40	51	59	52	49
GTCCTCATTTGAGGAC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
CACTCACGCGGCAAGT	alt_306_RC	116	158	121	129	156	95	147	102	156	106
CCTTTTTACTGAGAAC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TAAGTGTTTTCTACGC	alt_306_RC	2	6	6	2	5	8	9	2	4	3
ACATCTATTGACACCT	alt_306_RC	35	35	55	35	58	27	45	36	41	39
AACGGTAGGAAGCGCG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
ACGGGCTCCTTTCCCC	alt_306_RC	10	17	17	20	23	8	24	11	12	9
CTTAACCCCTGAGATT	alt_306_RC	61	50	71	54	63	46	58	51	68	40
CCTAAGTATTGTGTTC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TACGGTAGGAAGCGCG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GACCTCTTATATTCAC	alt_306_RC	98	97	106	84	64	72	100	86	89	93
GATTGGAAGCCCTTTG	alt_306_RC	44	38	58	32	48	43	51	39	47	39
CAGGTCGATAATGTCC	alt_306_RC	21	16	24	20	32	16	21	16	19	15
CTACTCAAGTCATTCC	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TTTTGTTTTTCCCTGG	alt_306_RC	0	0	0	0	0	0	0	0	0	0
TGTTGTGAGTTAACGT	alt_306_RC	0	0	0	0	0	0	0	0	0	0
GCCAGAGGTAATTCTA	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GCCGCGCGTCGATGGC	ref_940_RC	160	118	162	198	136	167	128	202	125	159
TACATGTGGGTCACGC	ref_940_RC	194	164	252	220	145	198	199	160	176	177
TCCATCGTACCAACCG	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TCGTAGAGGGGATCAT	ref_940_RC	23	28	18	37	28	27	33	21	24	29
AACCACTTCACTTTAC	ref_940_RC	17	17	25	13	10	23	20	15	18	13
ATGCGAGTGATTAACC	ref_940_RC	4	24	10	7	20	8	23	6	20	8
TTTTGGGTCATCGTGG	ref_940_RC	22	13	35	19	14	21	24	12	17	9
CCTCGGGTGTTTTACT	ref_940_RC	135	106	164	131	121	121	113	148	133	128
CACTGTTGTTGTTGAT	ref_940_RC	86	91	86	74	59	76	65	72	69	62
ACATACTTCTCTCCTC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GTCTGAGGTACTTCCG	ref_940_RC	18	17	17	13	21	8	9	16	13	11
CTGCCATTGTGCCTTC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TTTATCACGTCCTTCC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
CTCTGATGAGGTGCGT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
CCCATTGTGCCCTGTT	ref_940_RC	13	8	12	17	3	16	9	13	5	7
ATATGTCTGCTCAGTC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TATGTAAGAGATCAGA	ref_940_RC	17	26	19	22	21	23	17	16	20	25
TTGTCTGTAGGCCAGG	ref_940_RC	68	56	66	65	44	55	47	51	41	64
CAGTGTCTTGTATCCA	ref_940_RC	0	0	0	0	0	0	0	0	0	0
ATTCATATCTTTCTAT	ref_940_RC	32	23	51	49	26	40	22	49	22	41
ACTGATGTATTATCTA	ref_940_RC	11	10	14	16	10	12	9	8	14	16
CTCGGGCCCGAGTCCA	ref_940_RC	21	22	13	20	18	11	19	10	22	17
ATGTCTCTTGATCGGT	ref_940_RC	41	47	42	55	38	62	48	60	42	28
GTACTTCTATTCTAAG	ref_940_RC	87	74	114	92	79	72	76	77	78	72
CTACATTCCATATATC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GTTGACGTTACCTTGC	alt_940_RC	13	9	22	17	6	11	6	10	6	12
AACATTAGCATACTTC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TTGCATTTATATCAGT	alt_940_RC	11	9	11	10	9	6	5	7	6	5
TTTTCAATAATACAGT	ref_940_RC	2	3	3	7	3	4	4	1	4	8
GTATATCTTTCCTGTG	ref_940_RC	5	3	5	6	1	4	3	4	2	8
TTTTCGAATAGGGCGC	ref_940_RC	29	12	40	31	19	24	20	24	13	17
GTGGGTTTTCACATGT	ref_940_RC	6	7	10	12	6	7	11	5	13	6
ATGCTGCCCGCGACTT	ref_940_RC	45	31	58	54	43	51	48	35	42	42
CGATCCTTCAGTTGTG	ref_940_RC	14	17	19	10	14	18	11	16	11	16
TCGTGCAATGAACAAA	ref_940_RC	184	128	193	170	151	151	118	150	167	156
AACCAGTCGCTGTAAT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
ATTCGGTCGCCTCTGC	ref_940_RC	37	47	58	51	56	41	56	60	46	36
ACGCACTTATAGTGGC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GAAATGGTTTGCTCCG	ref_940_RC	22	24	28	27	20	20	42	14	26	26
TAATGATAGAGTTTTT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
CTTTGTGCGAACGTCC	ref_940_RC	12	12	20	11	16	18	12	12	18	13
TGCAACATCAGCACGT	ref_940_RC	55	51	79	68	49	59	45	57	72	52
AGCGTTCCCCTAAACG	ref_940_RC	0	0	0	0	0	0	0	0	0	0
AGCATTATCTTTACGT	ref_940_RC	118	108	146	123	112	109	93	140	113	96
TTATCGGTATGTGCTG	ref_940_RC	4	7	3	3	10	6	5	3	8	2
GTAATTGTGGACCGTA	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTGACCGAACTT	ref_940_RC	27	36	41	33	12	26	31	29	21	38
TGTTCCGATCTTCTTT	ref_940_RC	36	15	21	23	9	24	11	24	10	19
CCACTAGCCTCGTTAG	ref_940_RC	39	29	41	32	45	30	42	33	37	36
CGGATGCTTTGTTTCT	ref_940_RC	3	4	6	16	4	2	7	6	7	7
CAGTTCATATTTGGCT	alt_940_RC	10	11	7	14	4	6	9	14	13	8
TTGTGTTGAGATGCGT	ref_940_RC	48	40	30	35	31	34	32	32	39	17
AGGAGGAGTATTTGAG	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TTAGTCTTGGCGCTCT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GGTGTGTTTCAACTGT	ref_940_RC	63	48	65	55	36	46	48	47	64	46
ATACGATACCGCTCTT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TTGGCATGGCAACCTG	ref_940_RC	4	5	6	5	4	4	7	3	11	8
TTCGTACTTCACGAAC	ref_940_RC	17	20	28	38	20	30	23	35	22	15
TCCGTACTACCATTCA	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GTTATTCACTCCTAAT	ref_940_RC	11	26	19	12	17	14	22	16	23	10
CCTAGTGGTCAATTTG	ref_940_RC	8	16	9	5	10	5	20	8	23	8
ATTTTTACTTTGTCTC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GGCCTAAGTCATCAAT	ref_940_RC	12	12	18	14	29	25	18	21	18	19
CTTTATACCTGTCTTA	ref_940_RC	13	9	20	12	13	11	21	17	17	16
TCTCTACTATTCGTTT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GCTCCATATTCCCGCC	ref_940_RC	75	46	59	73	40	66	56	52	55	38
TAGTCGGTTGCCTGCG	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TGTATGTGTCATGGTT	ref_940_RC	38	32	39	38	24	31	20	33	27	35
GTCCGTGATTGGTGGC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TGTATGATCATGAGAT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GTTAGATCCTACTTCT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TATTGTCCCCTTACGC	ref_940_RC	0	0	0	0	0	0	1	0	1	0
CCGTGGGCTAAAAAAT	ref_940_RC	37	27	30	32	25	27	25	38	37	14
GCTTTTACAGCTACTT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
AGGCTCCCCTAGTCGC	ref_940_RC	11	22	18	3	8	12	15	10	21	12
GGAACGGGTCACAGGT	ref_940_RC	171	125	218	173	114	138	134	166	131	152
ATATCCTATGGGTCTA	ref_940_RC	48	46	63	59	49	55	64	45	63	54
TGTTACTCCGAGTACC	ref_940_RC	12	16	17	18	16	12	18	10	21	12
TCAATGTCGGTTCATT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TTTGGCGTGGCCTTGT	ref_940_RC	0	0	0	0	0	0	0	0	0	0
CCACTGTTGGTACGGA	ref_940_RC	59	54	80	75	48	56	50	65	57	61
CACTCTTCCTATATCA	ref_940_RC	26	19	26	22	24	28	20	21	21	19
CTTGTAATGAGTCGGT	ref_940_RC	46	32	47	33	36	31	40	40	47	25
TAAGTTATGCGATTGC	ref_940_RC	21	19	11	18	6	22	16	22	19	24
CGATGCCAACATATAT	ref_940_RC	1	0	0	0	0	0	0	0	0	0
CGTTCGGTGCAGTTAG	ref_940_RC	70	67	98	61	52	85	86	79	73	74
TCCGCCACATATACAA	ref_940_RC	83	63	84	71	73	79	95	86	65	77
CTACACCCGTCCCTGT	ref_940_RC	0	1	3	3	1	2	5	0	4	1
TGTCATTTCCCGTGAA	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TGCTTTATCCAGGACT	ref_940_RC	23	19	24	30	23	18	21	17	26	25
CTTACCCACTTTCTAC	ref_940_RC	0	0	0	0	0	0	0	0	0	0
GCTCTCGGTTAAACCA	ref_940_RC	163	192	203	158	189	171	222	157	176	175
TGCAGAAATTGATCAC	ref_940_RC	15	11	8	11	10	6	9	10	11	4
GCTGAGGCTTGATGCT	ref_940_RC	87	82	81	79	87	97	86	73	82	83
TTTAATGTGATCGAAG	ref_940_RC	0	0	0	0	0	0	0	0	0	0
TGTCACGTTGACTAGA	ref_940_RC	10	2	4	4	2	5	6	5	4	4
TGATCTGGACAGCGCA	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
CACCCGGTTCCACTCG	ref_5038_upstream	1	4	5	2	6	5	5	4	3	4
CGTGAGCTGCGTCATC	ref_5038_upstream	34	61	38	39	68	38	58	36	59	28
CCGTGGTTTAGTAAAG	ref_5038_upstream	11	25	15	13	22	10	12	10	29	11
TTGACTCCTCATTAGC	alt_5038_upstream	78	36	70	75	37	66	39	54	35	65
TCCTCCTACGAAGAGC	alt_5038_upstream	138	245	189	128	229	165	309	143	273	140
TGTACTGTCGCCGGCA	ref_5038_upstream	52	59	67	64	73	43	54	40	70	44
GATACCTAGCCCAGTG	ref_5038_upstream	10	25	12	12	13	20	26	8	23	8
GAGCACTTTTGTTTAA	ref_5038_upstream	14	22	23	24	42	24	44	24	32	17
AGTCCCTGGTTCAGGT	alt_5038_upstream	27	71	34	38	51	40	67	29	58	32
AGACGTTTCGACTATT	ref_5038_upstream	13	32	20	20	33	18	23	21	17	9
CGGGCTATGCTACAGC	ref_5038_upstream	59	82	46	52	79	40	58	36	82	33
TCACTGCCATTTTATA	ref_5038_upstream	29	27	34	40	43	26	26	29	34	28
GATTGATTCGTAGACC	ref_5038_upstream	13	30	24	14	21	12	34	11	39	10
ACAAAAGAGTACGTAC	ref_5038_upstream	2	71	8	8	74	5	50	9	60	6
AAAGCAATGGAGCATT	ref_5038_upstream	10	10	14	11	8	7	19	12	22	20
GCTTCGTGGTCTCCGT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
CTACGGTCTCATGGGT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCGCGTTTTTTAA	ref_5038_upstream	19	23	17	18	43	18	33	5	31	7
ATAACTTTACCACTCT	ref_5038_upstream	57	89	79	67	87	55	112	31	108	50
GAAGTGTTGGCTCGCC	ref_5038_upstream	21	32	32	30	24	11	34	22	25	17
CGTTTTTCAATGGTTT	ref_5038_upstream	75	144	116	101	142	88	183	68	182	101
TCTCAAGTCGTTCCCC	ref_5038_upstream	11	26	16	12	36	17	37	6	43	13
TTGTGCCCTAGACTAA	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGGCGTGTTTCAA	ref_5038_upstream	75	255	95	102	239	73	298	77	289	75
GTCGATTCGCGGCTTC	ref_5038_upstream	38	40	32	31	41	22	34	28	43	28
AGGACGTTAGCGCGTT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCTGTGAAGTGCA	ref_5038_upstream	28	17	23	16	38	9	23	25	39	18
TGTTTCAATCGACTCG	ref_5038_upstream	18	27	20	13	24	17	27	18	41	20
TTATTTTCTTGAGAGG	ref_5038_upstream	19	26	28	17	18	15	18	11	32	11
TTCCTAACGGTCTTTT	ref_5038_upstream	102	139	118	96	151	86	171	85	159	92
AAAAAATTTCAACGAT	ref_5038_upstream	43	70	64	60	62	62	94	48	90	45
AAACAGGTGTGGTTGA	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGCCTACTTTAGC	ref_5038_upstream	41	72	95	54	78	59	83	61	109	58
CGTGCCGACCTGACGA	ref_5038_upstream	59	98	63	52	67	58	112	67	135	59
GCGCGTGAATCTGAAG	ref_5038_upstream	325	460	384	336	521	319	478	339	505	326
ACGCCTGTTCGTCGGG	ref_5038_upstream	235	335	300	241	326	202	307	227	356	233
GGTATTTAGCGCTGGA	ref_5038_upstream	30	44	46	24	42	33	47	31	55	34
TCGGGCAATAATAGGG	ref_5038_upstream	122	195	152	159	195	130	174	149	211	99
GACGGTCTGTCCGGTA	ref_5038_upstream	45	49	36	27	45	39	47	20	60	27
CACGGGTGAAAGTTCC	ref_5038_upstream	15	13	8	18	22	9	27	15	24	14
ACCGTCCCCGATGGTT	ref_5038_upstream	5	16	9	9	34	12	25	10	48	8
ATTGCGGTGTTGGCTT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCTGCCTTTGTC	ref_5038_upstream	4	9	7	11	8	3	9	7	9	6
ACCACTTTCGGATAAC	ref_5038_upstream	6	6	6	7	6	0	8	7	10	8
ACTCGGTCTCTATACC	ref_5038_upstream	3	19	4	2	15	0	21	2	23	5
CTCATCGTGCCTTTTT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGTGGTTTTCTTG	ref_5038_upstream	48	71	67	61	70	50	78	43	76	48
TCTCATTATCTACCGG	ref_5038_upstream	7	5	1	3	10	6	11	8	11	6
TCGCGTTAAACGCGAC	ref_5038_upstream	5	27	10	9	15	7	21	14	16	6
CTAGCTATTGCTTTCA	ref_5038_upstream	44	113	59	57	128	48	126	63	132	52
TCTCCTCGCTTATGAC	ref_5038_upstream	42	70	64	29	78	37	98	41	85	42
TACCTCCTTGACGAGA	ref_5038_upstream	1	3	2	0	0	1	5	0	0	0
ATATATATTCTGATTC	ref_5038_upstream	8	14	3	6	12	11	12	7	14	4
ACTGCTCTTACTATGG	ref_5038_upstream	14	13	17	12	25	3	16	13	20	10
CGCCTATACAATAGGG	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
TTACTGCCAGGTTTGA	ref_5038_upstream	8	13	19	9	25	11	18	22	23	10
TTTTAGTGTACTCACA	ref_5038_upstream	12	20	23	14	31	10	28	12	34	11
AGTATCATCGAAGAGA	ref_5038_upstream	15	24	31	24	32	24	31	15	36	14
AACGTCACTCTACGCT	ref_5038_upstream	62	92	85	48	97	50	94	62	76	40
GTTTCCACTCTTGTCT	ref_5038_upstream	6	6	6	12	5	10	10	8	10	5
TTCCTTGTGCGATGAA	ref_5038_upstream	2	11	6	5	6	0	6	0	6	7
TCCCGTATAATGCAAG	ref_5038_upstream	69	88	76	60	95	69	103	46	99	66
ATTTGCCGGTCTAGCA	ref_5038_upstream	17	35	22	18	26	15	26	17	36	25
ATGTCTCTTGGTCTCC	ref_5038_upstream	30	35	32	21	36	19	25	16	35	9
TGTCATCTGGCAAATT	ref_5038_upstream	16	14	8	6	17	8	11	14	12	7
AAGCGTTCGCAGGAGT	ref_5038_upstream	6	4	4	1	10	2	8	7	9	8
CAATAGCACGAGCCGT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGATCGATTTGGG	ref_5038_upstream	33	51	53	52	52	36	45	40	77	33
TTTGGCACCGTAGCCA	ref_5038_upstream	45	100	61	45	88	52	89	51	103	51
CCTATCGCCAGTCGAT	ref_5038_upstream	1	0	1	2	5	1	2	2	1	1
TAGTCGGGCCGAAAAG	ref_5038_upstream	8	6	4	4	2	1	3	1	8	1
GGCCATCTTGTCCTTC	ref_5038_upstream	82	96	85	98	99	59	104	68	101	77
AACCCTTTCGGTTCGT	ref_5038_upstream	87	156	112	95	133	88	137	87	140	88
TTCTGCACTAATCGGG	ref_5038_upstream	30	33	22	21	32	25	39	21	52	19
GAGCGTAGACATCGCC	ref_5038_upstream	5	12	6	4	14	8	1	8	11	5
GTTAGTCAATTTTCAT	ref_5038_upstream	35	52	63	25	85	38	67	41	67	42
ACTAAGCCCAACGCAT	ref_5038_upstream	5	1	1	1	3	5	8	2	7	1
TGGTCGCTCTGCGATC	ref_5038_upstream	25	35	36	25	42	19	45	31	41	24
TTGCACCGCACGTTTA	ref_5038_upstream	8	20	9	13	19	5	15	17	18	6
GGGGATTAATGCCCTC	ref_5038_upstream	5	12	3	5	5	5	7	9	3	9
TGAACCGGCGGGTCTC	ref_5038_upstream	14	41	31	26	49	20	43	22	45	30
TTGGTGCTCGACAATG	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGCGTACGGTTCC	ref_5038_upstream	0	0	0	0	0	0	2	0	1	0
GATTTTGTCACCTATT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTTTGGAGGTGAG	ref_5038_upstream	7	2	7	3	5	5	3	4	3	2
TTCTATTTTGCCTGGT	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
TACGTTGCGTCTACGA	ref_5038_upstream	19	33	32	17	30	23	25	12	35	19
GCTTTCCGCTCGTGGA	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCAACAAGAATGC	ref_5038_upstream	0	3	3	1	3	11	8	3	6	3
CCTAAATTCACGCTTC	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
AATGACACTAGCCAGT	ref_5038_upstream	2	7	5	5	4	2	9	4	7	3
GCTTTTGAGAACCTCG	ref_5038_upstream	1	0	0	1	0	0	0	0	0	0
TTGTCTTTTTTATGCT	alt_5038_upstream	333	122	445	330	140	344	140	308	134	284
AATGCCCGTCCAGCTG	ref_5038_upstream	33	75	56	50	37	36	62	36	65	53
TGTGCCCGCAGTGCTG	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAACGAACGACTG	ref_5038_upstream	0	0	0	0	0	0	0	0	0	0
ACTTAGTCAGATTGTA	ref_5038_upstream	7	13	8	5	11	10	18	10	15	10
TAGAATGACAAGCGCA	alt_1643_RC	620	156	800	664	152	612	191	589	153	575
CGTCCTAAACCTCCCT	alt_1643_RC	280	78	350	324	76	261	74	270	79	258
TACGAGCTTAAGTCTT	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
ATCGGAGATTGAACAA	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
CGATTGAGAGCATATT	alt_1643_RC	658	128	837	720	131	668	153	595	174	558
TACTTTTTCAACCCAG	alt_1643_RC	151	34	172	166	39	143	24	147	34	125
GTCTGGGCTTCTGGGT	alt_1643_RC	277	61	291	258	66	222	73	249	79	228
GGTACTGCGGGTTGAG	alt_1643_RC	271	52	329	307	61	243	61	277	71	220
CAGTCTTGTGTCTTTC	alt_1643_RC	238	50	288	238	49	243	61	203	45	213
CATGTAAGTTGTTGTG	alt_1643_RC	274	74	343	289	77	273	108	278	76	218
GTACACTTCGTGTAAG	alt_1643_RC	123	40	120	90	45	98	41	99	51	72
CGCGTGGGTCGTATGG	alt_1643_RC	430	106	526	486	115	453	114	457	114	399
GATGGCATAGCGTCAA	alt_1643_RC	148	33	200	165	38	139	45	168	34	156
TCCTGGGTATCGTAGA	alt_1643_RC	147	25	159	160	31	125	32	162	36	136
GATTATTGCTTTTTAG	alt_1643_RC	709	133	800	747	133	601	145	626	127	538
CCAAGTGGAGACAGTC	alt_1643_RC	125	26	170	124	51	135	32	112	28	122
CCGTCACATCCAGCCA	alt_1643_RC	36	8	53	30	11	29	8	40	3	33
CATGCAGGATTGCACG	alt_1643_RC	144	24	138	140	29	112	35	158	31	116
TTTGCTTAATCGCGGC	alt_1643_RC	218	70	263	256	65	195	59	226	71	205
TGTACAGCGAGGGTTA	alt_1643_RC	105	26	107	95	27	94	29	90	18	81
ACAATAAATGTGCAGA	alt_1643_RC	4	0	5	5	2	3	0	3	2	1
AGTCTGTGAACCTCTA	alt_1643_RC	173	40	210	165	41	163	40	156	48	154
CCATTATGTCGAGTTT	alt_1643_RC	396	105	507	482	88	386	84	418	111	316
CTCCGCCGGCAGCATC	alt_1643_RC	39	15	36	34	6	20	6	24	9	20
GTCAGGCGTCCTTCTG	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TTGTTGTTCCCAGGGG	alt_1643_RC	100	13	131	82	15	91	17	85	19	68
ACGGTGCTATCTTGGT	alt_1643_RC	254	41	275	238	51	240	66	221	62	207
TATTTGTAGATTCTCG	alt_1643_RC	33	8	43	42	7	29	6	36	8	27
TGGATTAATACTTGTA	alt_1643_RC	72	16	88	76	17	74	14	78	25	71
TCTCAACACCGCCGTT	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGGGACCATCGA	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
ACAATTTACGTTAGGC	alt_1643_RC	8	1	20	11	0	7	2	17	3	10
CCTAGACAGTCGATAT	alt_1643_RC	408	150	444	368	149	326	160	340	141	326
CAACCGCTATCCGGGT	alt_1643_RC	141	44	175	166	61	134	44	136	53	111
TGATTTTACGCGGGCG	alt_1643_RC	135	23	175	133	29	109	35	115	37	115
AAGGATAAGGGGCGTC	alt_1643_RC	33	19	47	66	7	50	8	38	4	33
TTTCTTGGAAAACCGT	alt_1643_RC	283	66	328	304	59	256	64	277	57	208
GTCCAGAGAATCAGGT	alt_1643_RC	117	21	168	138	27	103	32	142	35	87
TCAGCACGTTTGCTTG	alt_1643_RC	118	53	211	154	37	141	41	145	50	118
TACTTATGAGGTGTAA	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TATTTGTAGTCTATTC	alt_1643_RC	312	100	377	373	107	252	84	268	107	232
TAGGCTGATTCATTTG	alt_1643_RC	260	49	324	327	73	289	67	264	68	236
CCACGTTTAAGCTTGT	alt_1643_RC	168	38	187	216	47	172	40	201	38	189
TAAATTTAAGTCACCA	alt_1643_RC	17	1	15	11	4	11	3	10	3	4
ACCGTAGGAGCTAGAT	alt_1643_RC	507	116	599	563	126	499	142	453	121	479
AGTTATTTGTACCCTT	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TAATAAAGGATCAAAT	alt_1643_RC	75	8	84	78	20	82	14	74	17	62
TTCTCTCATCCTGTCG	alt_1643_RC	1073	244	1295	1166	257	893	252	1014	231	888
GCATGCGGCTGAATAG	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TCGGGTGCGGCTAATA	alt_1643_RC	61	12	90	62	13	74	15	60	13	44
AATCTCGTCAATAATC	alt_1643_RC	233	58	309	240	63	229	63	210	51	184
GTTGATGCTTTGATGT	alt_1643_RC	87	29	99	110	19	79	20	83	24	64
CTGGGTTATCGACCGT	alt_1643_RC	108	30	152	117	54	108	44	118	58	106
TATGGTTTTACCTTCT	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
CGATCTTTGATATTTC	alt_1643_RC	39	10	36	32	6	28	8	29	6	36
TTTACACGGCTGCATT	alt_1643_RC	153	38	199	196	38	143	39	178	46	116
TATAAAACGTGGGAAA	alt_1643_RC	103	27	123	118	19	107	16	87	19	82
ACAGGGTAAAATTGCA	alt_1643_RC	170	46	215	159	39	136	49	155	43	145
TGTTGTTCAATTGTGT	alt_1643_RC	338	88	418	336	89	319	75	319	104	290
TAGTATGGTTCCAGTG	alt_1643_RC	183	55	202	193	41	154	35	146	48	151
TGTTATTTGTACCCTT	alt_1643_RC	632	150	699	672	117	615	157	485	168	524
ATGGAATAGGTTATGT	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
ATGCAGTGACTTACCC	alt_1643_RC	117	42	173	121	42	119	48	153	50	122
GGTTTAAGTAGTGACG	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
AAACCGTCCCCAGTAT	alt_1643_RC	76	46	101	93	28	86	27	99	27	79
TATTTTTTCCATCTGC	alt_1643_RC	222	50	285	239	59	244	70	200	69	176
AGCTGAGGGAAGTTTT	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
ACCTTTCTTTACTGGT	alt_1643_RC	486	118	548	515	153	446	143	437	141	338
TCTGAACGGTGTCCTT	alt_1643_RC	46	14	67	52	3	50	10	44	11	36
AAATAAGAGGTAGTCA	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TGAACTTAGCCTCACA	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
CATGTCCTGGGTAATC	alt_1643_RC	225	53	220	253	54	171	57	225	49	145
ATCGGCTTTTGTCCCG	alt_1643_RC	209	54	265	224	58	208	66	222	66	186
TCAGCCATGATGCTCG	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
ATACGTCACCCATGCG	alt_1643_RC	55	4	64	55	9	51	11	46	8	44
GTTGAGTGCGATCTTA	alt_1643_RC	73	12	86	92	24	73	21	64	17	47
TAAGGGCCATGCAGAT	alt_1643_RC	62	25	95	75	12	93	22	71	21	71
TAATTGTAAGGGAGCA	alt_1643_RC	380	97	467	434	89	406	99	400	97	322
CTGCCCTGCTCACCTT	alt_1643_RC	54	8	50	50	14	50	13	42	10	31
TAAGGTACGTTTGGGT	alt_1643_RC	140	24	222	188	34	166	34	138	33	144
CGTTCTACTTCATCTC	alt_1643_RC	106	34	145	136	33	116	34	93	43	93
TACCTCCGGCCACATC	ref_1643_RC	366	95	454	438	79	345	86	405	92	292
TATCACCTGAGCTATG	alt_1643_RC	97	34	145	128	51	122	38	121	40	92
ACGATGCTTCACTGTG	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
GGGCAAAATGCGTGTC	alt_1643_RC	669	177	879	754	205	730	183	705	186	637
CCTCCTCGATCATACG	alt_1643_RC	622	130	767	689	148	557	184	552	127	501
TCAAAGCCGCTCTTAG	alt_1643_RC	222	83	292	246	70	213	63	219	70	158
CGTGATTCGGGCCTGA	alt_1643_RC	121	28	136	126	23	101	21	111	26	101
CTTCGACTCTGACAAG	alt_1643_RC	170	58	184	189	54	145	47	188	67	134
AGAACCTCTTGTAGGA	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
CGATACAGATTTCCAC	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTTTTTTTGTTC	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
GGATGAAATTGTCAGG	alt_1643_RC	214	43	316	249	52	221	45	208	63	198
GTACATCTTAGTTTCA	alt_1643_RC	161	41	238	205	39	153	45	146	49	158
GTCCGGTTGTGGCCAA	alt_1643_RC	117	31	135	143	38	116	40	118	37	122
GGATGTTAATCGAATT	alt_1643_RC	349	71	418	352	82	376	106	321	90	287
TTACGACACGCCGACG	alt_1643_RC	79	16	108	104	15	83	17	95	15	65
AAGAGGATCCTGTTTA	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TCTATATCAAGATGTT	alt_1643_RC	240	60	282	253	69	206	64	216	77	192
GATCAGTTGTGTATGT	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
GTCAAAAACCAGGGGT	alt_1643_RC	265	65	354	340	65	246	74	275	66	229
ATTCTGCCTAGTTTAC	alt_1643_RC	86	22	111	93	29	74	24	68	52	94
TCTAAGCAATCTCCCA	alt_1643_RC	171	57	246	216	44	204	50	164	45	193
GTTACCACTGACCATA	alt_1643_RC	74	19	83	86	22	70	22	65	22	76
GGACAACCCCAGATGA	alt_1643_RC	104	18	120	118	31	96	19	106	29	96
TTGGGTTACCTTGAGC	alt_1643_RC	164	47	220	207	31	147	44	113	47	149
TTTACTCTTTGCGCGA	ref_1643_RC	111	25	110	115	32	96	24	100	21	90
GGCACGGTACAAGCGA	alt_1643_RC	12	4	24	26	5	19	6	34	5	24
GAGTGTTTAAATATGC	alt_1643_RC	4	11	12	6	8	5	15	3	8	2
ACCCTGATGCTTCCCC	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
TCGGCCCGTTTCTCGT	alt_1643_RC	26	8	25	26	6	13	9	11	6	6
GAATTCCACGCCACGG	alt_1643_RC	8	1	16	4	4	8	1	2	4	11
TCCGAACGGTAGTTCC	alt_1643_RC	0	0	0	0	0	0	0	0	0	0
CGTTCGAGCCGACTCA	alt_1643_RC	26	9	22	20	6	12	7	27	4	24
TAGCGCCCCGCTCCGC	alt_1643_RC	38	10	50	37	6	25	11	50	9	37
GCGTTTTTTATTATCA	ref_5790_new	6	10	10	1	10	6	13	2	10	4
GAATCTGGGGTATCGT	ref_5790_new	15	21	15	19	24	12	22	13	26	11
GAGGCCTGCGTTTGAA	ref_5790_new	11	16	11	11	10	11	11	6	15	13
TGAGGGAGACTGTGTC	ref_5790_new	0	0	0	0	0	0	0	0	0	0
TAGGTTCGCTATTCAG	ref_5790_new	34	85	59	51	100	40	90	51	72	36
CCTCTAGCTTATACCT	ref_5790_new	5	12	2	2	16	1	15	1	13	1
CGCGATCTGTGAATAA	ref_5790_new	0	3	1	3	3	3	3	0	2	1
TAGCTCGCGCTTTTGC	ref_5790_new	0	0	0	0	0	0	0	0	0	0
TGAGAATTCCCCGTTA	ref_5790_new	11	32	16	21	40	8	30	12	35	15
TTCGCTTGTTATTCTA	ref_5790_new	133	243	168	182	235	155	241	177	246	112
CGGCGTCCGTTCAACA	ref_5790_new	18	21	13	12	31	10	24	12	21	9
CTAGTTAAAATGAAGC	ref_5790_new	12	25	15	21	31	7	27	18	35	15
TTGAGTACTCTCCGGC	ref_5790_new	0	0	0	0	0	0	0	0	0	0
ACCGCTCTGGATAGTT	ref_5790_new	29	100	49	37	97	30	89	41	118	42
GGTTTTCTAGGTCCAG	ref_5790_new	0	0	0	0	0	0	0	0	0	0
ACCTTTGTCATTAGCT	ref_5790_new	0	0	0	0	0	0	0	0	0	0
TTCAAAGTCGCTAAGT	ref_5790_new	9	16	16	19	16	6	25	13	26	10
CGGCATACGTCAGAGT	ref_5790_new	3	2	2	1	3	0	1	0	11	1
GCGTTGGATTTCCCTT	ref_5790_new	21	33	21	21	27	16	26	23	29	20
TGCCGTTATGGGGTCT	ref_5790_new	0	5	2	0	0	1	7	0	0	1
CATCTGTATCTGGGGG	ref_5790_new	60	71	60	61	96	44	79	40	82	47
TAGAGGATGGGAACTC	ref_5790_new	8	13	18	13	19	11	10	9	17	11
CCCTTAATGAGCACAG	ref_5790_new	32	59	48	32	68	31	51	38	59	20
TTTCGGTGTTATCCGT	ref_5790_new	2	6	4	3	4	6	5	3	4	1
AGTTGGGCCCAGGACA	ref_5790_new	1	2	6	1	1	2	0	6	5	0
TTCTGTTACTCGTCCA	ref_5790_new	0	0	0	0	0	0	0	0	0	0
TGTAATCCATGTGGTG	ref_5790_new	0	0	0	0	0	0	0	0	0	0
TCTAGAGAATAAATGG	ref_5790_new	0	0	0	0	0	0	0	0	0	0
TAACGTCATTATGCTC	ref_5790_new	0	0	0	0	0	0	0	0	0	0
AATCCTGCTCTTATTG	ref_5790_new	15	18	21	19	34	19	34	14	23	19
GCGATTCAAATAGCTA	ref_5790_new	7	16	5	11	10	10	9	12	17	15
TACTCCTTTAAACTGC	ref_5790_new	29	43	20	20	45	28	52	25	43	26
CCCCCTGCTTGGGTTT	ref_5790_new	0	3	4	2	4	3	3	2	5	2
ATGCGCGTATAATAGC	ref_5790_new	58	100	93	59	90	58	110	70	113	51
CCTGCCGGCTAGAGAG	ref_5790_new	17	32	37	31	47	26	29	25	49	26
GCTCCCGTCCATGTCT	ref_5790_new	11	24	15	13	19	7	20	8	14	7
GTTCATGATGGTAAGG	ref_5790_new	117	173	130	115	189	103	191	97	212	102
ATTCTTTATTCGGCGG	ref_5790_new	12	20	21	13	33	12	24	15	27	11
TGCCTATTGTAACCAG	ref_5790_new	66	88	53	48	71	52	93	34	140	43
TCCGGATCGTGCACTT	ref_5790_new	46	95	44	39	76	34	98	55	76	33
ACAGTTTACCCGTGCC	ref_5790_new	68	105	77	58	101	52	84	46	106	62
CCGTTAACAGGTGATA	ref_5790_new	5	23	23	15	21	12	31	15	20	15
CTGGGGCTGCATCATC	ref_5790_new	5	3	4	3	5	1	9	0	9	2
GAACGCTGGAGTAAGG	ref_5790_new	39	62	38	36	51	39	36	38	76	39
GAACGTAGAAAGGCAA	ref_5790_new	0	0	0	0	0	0	0	0	0	0
GTGCATAGCATACTCC	ref_5790_new	9	19	15	4	18	8	27	6	22	8
GGATAAAAGGAGTCTT	ref_5790_new	0	0	0	0	0	0	0	0	0	0
GACCTCGGGTAGCACT	ref_5790_new	0	0	0	0	0	0	0	0	0	0
GGACGTCGCTACGGAG	ref_5790_new	13	21	20	8	31	16	19	11	30	17
TGGAAGCAGGTTGCTG	ref_5790_new	40	55	53	33	41	29	55	24	62	31
CCCCTGCATTGCTGGG	ref_5790_new	26	30	28	26	45	24	35	19	42	28
TCGCTTATGGGTGGAC	ref_5790_new	0	1	3	0	4	1	5	2	3	2
TGTATCCGAAAAATGG	ref_5790_new	38	42	33	34	46	44	36	28	35	28
ACAGGCTCATTGGTTT	ref_5790_new	23	64	26	32	39	29	55	18	45	30
TGGGTTACGTCCGTCG	ref_5790_new	15	22	17	16	28	23	27	17	18	21
CCACGGCTGTCAACCC	ref_5790_new	15	54	21	19	67	17	53	19	64	23
TAGTTGGTATAATTGT	ref_5790_new	14	31	15	24	34	12	35	8	22	19
CGGTTTCCAGTTTAGA	ref_5790_new	3	3	0	1	7	1	1	3	3	4
GTCTGTTTATTAGAAA	ref_5790_new	34	78	39	24	77	33	78	27	62	37
GGTATACTAAGGTAAC	ref_5790_new	50	86	59	54	69	47	84	57	94	39
TCCTATGTTCTCTAAT	ref_5790_new	66	108	80	65	112	63	98	64	108	54
GCCTTAATAGTGGACC	ref_5790_new	47	105	76	64	121	58	86	51	119	46
CGGGGAAATTGTTAAT	ref_5790_new	26	34	27	22	39	21	43	24	45	18
TATTAAAAGGTAGAGT	ref_5790_new	12	23	14	6	21	9	19	9	16	6
GTTACGCTTTCGCAAA	ref_5790_new	0	0	0	0	0	0	0	0	0	0
TTGTCAATATTGCGAG	ref_5790_new	17	52	25	21	32	26	31	12	27	24
TAGGTGGTAATCGTGC	ref_5790_new	0	0	0	0	0	0	0	0	0	0
CTTGTCCCGACTCATC	ref_5790_new	39	95	58	38	86	50	99	37	94	43
ACGCTACTTCATCAGG	ref_5790_new	1	3	5	6	3	1	1	3	5	1
GGCTGCACATTGCGAT	ref_5790_new	164	258	186	151	295	140	303	139	283	130
ACAGTGTTGATACATT	ref_5790_new	38	77	34	34	81	34	63	32	75	31
CCGTGAGATCCATAAA	ref_5790_new	14	23	17	15	28	13	13	11	25	7
TTAACGAGTTAGGTTC	ref_5790_new	18	37	35	32	33	15	55	27	43	18
TGCTTTAAGCACTTGT	alt_4264_RC	3	2	3	3	3	7	5	2	4	0
CCTTGAGCCATAGTAT	alt_4264_RC	75	52	72	67	66	72	72	75	72	61
ATACGGCGTTTAATTA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CCGACCGGTCCCCTGC	alt_4264_RC	28	54	41	37	40	33	38	32	35	30
CTATCCGGCTCATTGT	alt_4264_RC	31	12	26	31	29	30	12	23	24	28
AGCGCGTCGATGTTTC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
ACTCGTGTTTAGGAAG	alt_4264_RC	105	73	130	98	60	83	61	75	76	75
TTGTTGCAATTCTGGG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CGATTCTTTATTACCA	alt_4264_RC	214	116	239	196	117	165	116	181	121	189
TATGTCGAGGGAGAAC	alt_4264_RC	14	10	20	24	10	27	14	19	15	21
AATTTTGCCTGCGTGG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AATGCACATACGCCAA	alt_4264_RC	65	46	72	69	46	62	41	53	40	55
GTGTCATATTTTGAAA	alt_4264_RC	33	19	23	31	31	27	12	22	15	22
TATGTTTCAACCGAAG	alt_4264_RC	17	9	13	13	11	10	9	9	10	8
TAATAGATTCCCTGCT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TGCAGTGTCAAATAGG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AAGATAGCATTATGCT	alt_4264_RC	5	2	11	11	7	6	9	12	3	5
CCTATATTTAGCAGCG	alt_4264_RC	66	30	62	69	40	59	33	65	21	57
CTTAAGGGCATTGATA	alt_4264_RC	13	8	16	17	6	11	17	12	16	10
AAACACACCCTTATGC	alt_4264_RC	16	78	15	25	75	17	60	16	83	15
TGTTAGCCCTCGAAAA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTATCTCTAAAAATGA	alt_4264_RC	106	51	110	101	46	90	40	93	43	55
GGTCTTCTCGGGGGCT	alt_4264_RC	64	30	56	46	37	50	30	41	41	46
TTGACGAGCTCTATAA	alt_4264_RC	217	162	287	259	156	251	181	210	169	241
ATAAGATGCGATTCTT	alt_4264_RC	22	13	15	15	10	17	8	18	11	20
GGGAACAAACAGGCTC	alt_4264_RC	38	17	36	24	11	43	14	33	22	29
GGTGAATGGCATGCGG	alt_4264_RC	67	44	66	80	40	71	42	83	46	63
GTTCGACCTTGAACTA	alt_4264_RC	27	24	31	27	16	31	16	28	19	20
CGCTCAGTAGGCCCCT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTGCTGCAGGGACGTT	alt_4264_RC	34	20	41	41	22	44	20	34	19	38
GTAATCGTGTAGGCCA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TGCAGGTTGGAGTCTT	alt_4264_RC	125	89	124	107	66	103	85	108	68	116
CAGCAGGGTTATATGG	alt_4264_RC	162	108	148	160	90	139	108	129	101	111
TCTATTTAGTCTCGAC	alt_4264_RC	191	125	223	199	95	174	149	170	141	153
GAATATGTACGAGTCG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CGAATGTACTTACCCT	alt_4264_RC	1	0	1	0	1	2	1	0	0	1
TCCCGGGAGGCTCCGG	alt_4264_RC	58	38	49	42	35	38	29	39	24	49
TTATTGAGAGTATACC	alt_4264_RC	15	12	22	20	7	10	16	15	10	16
GTTTTCAATCCAACTA	alt_4264_RC	39	24	38	24	31	34	18	31	15	26
CTACCATCAAGCTTTG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTTGTTACCTACGAAT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CTAGTGTGTCTCCTCT	ref_4264_RC	220	222	275	273	259	253	223	246	251	206
CCTCGTTCAGACGGCC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
ACTCGGTATATGATTT	alt_4264_RC	486	326	570	471	299	459	322	458	286	462
CTTGAGCGGGAAACTC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AACGCTGCTTATACGG	alt_4264_RC	19	13	27	29	8	25	13	13	12	21
CGCAGGGAATCTCCGT	alt_4264_RC	169	91	214	172	92	162	104	151	113	155
GACATTTTTTACGAAT	alt_4264_RC	122	57	111	131	70	128	66	107	59	110
ATGTAACATTAGGGAT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
ATCCGCAGATTCCTAG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GTCACCCGCTTCTTTA	alt_4264_RC	10	6	14	12	2	7	6	15	4	19
CAGTCACCAACGCGAA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CAAATTAAAGATTGCA	alt_4264_RC	14	4	18	7	4	8	10	10	8	12
GACCCAACAATACCTA	alt_4264_RC	29	16	42	29	20	28	16	35	24	24
ACTCCACCCCTGGGGA	alt_4264_RC	41	37	34	21	57	21	51	23	56	21
AAAGATCGATGACGTA	alt_4264_RC	59	37	83	62	40	67	24	61	46	60
CAGGTCATAAGTGCAA	alt_4264_RC	79	56	64	63	64	71	51	52	46	63
CTGCTGTTTCTTGGTG	alt_4264_RC	83	58	94	106	40	78	38	74	44	87
CCGGTCGTATCTGTAA	alt_4264_RC	8	6	2	8	13	9	13	9	7	8
TTGTTAAATTACGGCC	alt_4264_RC	28	26	54	32	20	35	22	28	18	30
CCGTAATTTGGAAACG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CGCCTCACGGTCATGG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTCACGAGAATTCTAA	alt_4264_RC	19	8	24	26	10	18	18	17	11	22
CGCATAGAACCCTCTC	alt_4264_RC	27	23	28	26	25	24	20	31	26	31
TTTCTGACCGTATGTC	alt_4264_RC	1	1	1	3	7	7	3	6	0	2
AGGTATAGTTCTCCCG	alt_4264_RC	78	55	72	62	55	47	65	62	59	63
CTCAACAGGTTATTAG	alt_4264_RC	66	25	52	45	37	45	30	31	51	31
TTTATTGATGGTCAAT	alt_4264_RC	51	32	62	67	40	54	34	50	41	54
GTGGTTAGCGCACGGA	ref_4264_RC	126	88	159	145	83	129	87	116	86	91
GATACTCAGAGTTCCT	alt_4264_RC	54	32	49	38	30	39	51	45	34	35
TATGTGCCTAGTCTTA	alt_4264_RC	37	35	49	41	40	33	33	34	26	37
TTGCCTGTCGATCATT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AAAATACCTGCTTGGG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AGTCCATTATGGCTGA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CTCCAGACTGTCTCAT	alt_4264_RC	66	55	76	44	75	60	56	69	54	68
AAGTGTCGGACGTATA	alt_4264_RC	2	0	9	10	0	4	4	4	0	11
TCCCTTATTGCAGCTG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTGTACTTCGTACCAC	alt_4264_RC	66	31	97	70	41	69	46	70	63	54
GGCTAACCCGTATAGC	alt_4264_RC	78	65	104	104	43	84	51	69	64	84
CAGATCTTCCAGAGCA	alt_4264_RC	13	20	22	15	14	22	12	8	17	13
AATCGTCAGTTCCAGC	alt_4264_RC	223	152	298	232	144	227	140	242	154	218
ATACGTGTGTCACACA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTAGTTTCCCGC	alt_4264_RC	117	82	139	126	105	154	71	109	92	114
GATTGCGGTCAGCGCA	alt_4264_RC	128	94	158	136	84	143	106	114	91	141
GCGTTCACGATTTTGC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TCACGACTTACAATTT	alt_4264_RC	45	23	52	54	18	48	33	35	29	40
GGTTTCCCACGGGTAA	alt_4264_RC	10	3	9	6	4	9	2	7	5	9
TCCAGTGAGCACGTCA	alt_4264_RC	93	49	148	108	70	73	53	80	72	98
ACCTCCCAAATTTCGA	alt_4264_RC	2	3	5	3	1	0	0	1	1	0
GTGCTCCCTGCCATGA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TCCAAGAGCCGCCTTT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CCGGTAGCCGAAATTC	alt_4264_RC	0	6	2	1	9	1	11	2	3	1
CCAATTCCTGATTTAC	alt_4264_RC	28	44	25	33	49	14	36	22	51	17
CTCGGTACCTAATTAC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GAGTCTGCCTCAATAA	alt_4264_RC	61	24	70	63	32	56	37	52	44	39
AGTCATTTATCGAGTG	alt_4264_RC	129	69	122	121	62	120	75	117	66	109
GTCTCATTCCCATTTG	alt_4264_RC	32	18	38	23	14	30	20	24	17	17
GCTATACATATCGCTA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GGTTTGGGTTTGGAGT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GCGGCTCCACTTATCG	alt_4264_RC	16	15	17	24	11	10	6	12	13	15
TATCCCAGGCGAATGC	alt_4264_RC	344	202	370	366	235	310	212	292	253	289
GCAATGTCGACTTCGG	alt_4264_RC	35	21	54	43	27	44	24	41	29	48
CGGACCGGACAAACCC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TCTGATGATTGAGCGC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CTTCCTATAAGTGCAC	alt_4264_RC	31	24	52	33	22	28	19	21	33	22
ATCCAATGTCATAGAC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GCACCGCTCGTCACGT	alt_4264_RC	267	111	300	248	126	217	152	220	109	211
CCGGTACTTTTCTCAT	alt_4264_RC	38	27	58	53	26	36	30	43	34	38
AACTCTAACGTCCTTG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TGCAATGGCGTGTTTT	alt_4264_RC	123	73	160	141	76	148	109	104	92	148
GCTTATGCTTTGATTC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTTGGTGATTCC	alt_4264_RC	95	57	115	99	53	98	60	100	81	74
TGGTTATACCTACGGA	alt_4264_RC	104	85	96	87	66	76	56	92	54	79
CACGGTCGCAAGATGC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AAGTCTTTCAAATGAT	alt_4264_RC	73	34	67	74	38	67	55	54	48	48
CTCCTTATTGGGAAAT	alt_4264_RC	21	16	25	13	12	20	11	16	12	18
ACTAAACTAGGCTAGC	alt_4264_RC	93	60	99	78	62	95	70	75	74	89
CTAGACATTTTTCAGT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GGTAACTTGCGCATTA	alt_4264_RC	45	39	36	45	24	22	23	25	31	35
TTCCATTTAGTCACAT	alt_4264_RC	37	38	58	56	30	32	31	35	40	44
CGACAATTGTAACGTT	alt_4264_RC	253	153	319	261	157	266	162	222	165	223
TCGGATGCTGAAGTCC	alt_4264_RC	63	54	64	71	34	72	44	62	50	60
TATTGTTACGAACAGC	alt_4264_RC	34	24	71	40	26	47	34	30	21	43
CTCGGTCGTACTTTTC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CACCCGCCAGATACTT	alt_4264_RC	66	43	93	65	41	76	39	54	53	70
TACTTGTACTATCACC	alt_4264_RC	126	92	155	137	82	115	76	106	87	117
CTGTCGCATCCGTTTT	alt_4264_RC	57	51	73	62	48	63	35	64	36	54
CATTGGGGGACCCCAA	alt_4264_RC	40	15	27	31	14	27	26	33	23	19
CTGATCCGTTAAGGAG	alt_4264_RC	173	104	212	156	108	178	95	170	110	158
TACTCATTCTAGAACA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
ATAAGGGGCCGGGGTA	alt_4264_RC	23	15	26	25	7	23	9	24	14	24
ATCCGGATATGGGTGG	ref_4264_RC	383	218	459	383	240	385	235	355	258	351
GTTCCATACTCAATTA	alt_4264_RC	285	166	399	304	216	308	202	341	197	263
ACTCCCGGATCTGACC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTTGTCTCGGGCGCGG	alt_4264_RC	25	15	36	35	6	30	11	28	13	24
TTCGTAGGAAATTCCC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GTTTGTACGGTATCGC	alt_4264_RC	23	18	29	20	14	21	25	28	12	31
ATCCTCGGGATGCTCA	alt_4264_RC	37	28	38	46	33	28	29	34	31	35
TACTTTTACGAGGCGC	alt_4264_RC	22	18	44	27	12	28	13	32	13	14
GCATGCAGGCTTCTTC	alt_4264_RC	24	14	43	32	14	35	17	40	22	25
ATTCTTCCTGAAAAAT	alt_4264_RC	61	47	67	56	36	67	35	55	41	57
ACACGAGGAAGGTCGG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTACATTCTTTA	alt_4264_RC	152	99	217	169	125	176	102	146	117	128
AAAAGATCTTCGGACT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TATCGTGCGGACCGAT	alt_4264_RC	3	8	11	11	1	7	5	10	3	6
CATGCCATATTGTAGG	alt_4264_RC	37	18	44	25	20	17	23	27	22	32
CCGTCCGGCGCTGGGT	alt_4264_RC	22	16	19	22	8	16	11	17	12	13
GACACTCAGCGATCGA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GTCGTTCGCTTCTTTT	alt_4264_RC	2	3	6	3	4	2	9	5	1	2
GTAGACCTTTGTATTT	alt_4264_RC	0	0	2	0	0	3	0	1	1	0
CACCTAATGCATCCGG	alt_4264_RC	117	79	134	130	79	101	74	112	97	107
TCCTTGGCTTCTTGAC	alt_4264_RC	27	10	23	19	27	13	8	11	16	7
CTAAACGGTTGTAGTT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CTTCTTTAATCCACCA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTACAGCTTTCTGCGA	alt_4264_RC	15	11	12	15	17	15	21	5	12	8
GGAGTAGTACATGGGG	alt_4264_RC	76	39	72	70	40	79	60	73	54	63
TTACTGCAGGGACGTT	alt_4264_RC	27	10	25	18	11	11	16	20	9	16
ATTGGTGCTGTAGCTG	ref_4264_RC	111	76	138	138	127	118	100	126	104	126
CATTCATTTTGAGTCT	alt_4264_RC	4	6	7	8	7	10	7	9	4	14
GTCAACAAATAGATAC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
ACATGGCCTTTTTTAC	alt_4264_RC	175	116	185	174	96	150	120	148	123	165
CCGCTTTTATTTCGGG	alt_4264_RC	2	4	2	2	7	3	0	10	2	0
CTGCGACCGTACGAAT	alt_4264_RC	19	21	27	33	21	16	17	15	14	20
ACACGCCAGATTGTCT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTTGGTTTGCAGTTCA	alt_4264_RC	147	104	198	168	117	143	95	124	134	130
ACCATACCCTGTGGGT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
CACTTAGGTCTTAATT	alt_4264_RC	64	26	90	75	29	58	35	76	53	73
CCTTTGCTCCGCACAT	alt_4264_RC	61	77	68	62	73	53	84	47	66	52
GGACCATTTAAGTATA	alt_4264_RC	207	135	245	207	152	203	163	199	158	177
TCTGCATCCGGCTGGC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTTGGTCCATTGTCTG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TAAAATACGCTCATAG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AGAGCCCTGTCTACTT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTACCGATGCACCTTG	alt_4264_RC	86	67	105	94	66	99	76	93	70	75
GCGTCCTTGCTGTATG	alt_4264_RC	7	5	6	5	5	8	2	6	1	8
AATGTTATAGCAATCG	alt_4264_RC	127	90	194	188	86	121	94	136	99	129
TCGCTAGCGTGAGTGC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GTACGTCCTTAAGAGT	alt_4264_RC	42	36	53	41	34	50	41	36	41	37
CATTCGCGAGGACCGT	alt_4264_RC	55	35	80	54	42	55	54	51	33	72
GTCGGTTATGTAATGT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AACAAGGGTGCGTTGG	alt_4264_RC	230	119	259	210	134	201	164	211	131	210
GCTTCATCTGGCAAAA	alt_4264_RC	113	66	102	106	62	92	67	99	65	83
CATGCTGCTGAGGCTT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TATCACTCGTCGATTG	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTATCTGAGCCGCCCA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTACCACGCAGT	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
GTTTTTCTAGAATTTA	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
AACCTTCATTAATACA	alt_4264_RC	11	6	19	21	17	14	12	11	13	10
CCGTGACATCTATTAC	alt_4264_RC	12	13	11	11	19	15	25	8	28	12
CTGGTCCTTAATTCGT	alt_4264_RC	43	24	53	52	21	45	20	37	34	34
AAGAGCGGTGGGAAGC	alt_4264_RC	0	0	0	0	0	0	0	0	0	0
TCGGCCTGAGGAGTTC	alt_4264_RC	309	193	375	339	205	254	192	284	202	286
TATGGATGTCTCCGAT	alt_4264_RC	5	2	10	10	4	5	4	8	5	7
GTATATGGCTGGCAGA	alt_4264_RC	252	167	327	293	168	225	132	244	161	211
AGGTCGTCGTCTGCTT	ref_1402_RC	35	54	39	41	56	19	85	33	62	31
AAGACAGCGAAATAAG	ref_1402_RC	2	0	8	7	1	2	3	2	2	2
CGTGATTTACACGGAT	ref_1402_RC	29	27	27	17	16	15	31	18	34	9
CGGAGTGAATTTACGG	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGTACAAGCTCT	ref_1402_RC	33	53	37	24	58	37	53	39	60	26
TGGCTCAGGTATTCAC	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
GCGGGGCTATGGATAG	ref_1402_RC	44	101	59	55	121	47	106	49	93	38
ACCGAGCGGAATTGCA	ref_1402_RC	23	50	37	23	53	11	56	17	60	19
GATTTCGTCCGACTAT	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
TCATCTGGTTGACCCA	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
CGAGTAGGCATGATTT	ref_1402_RC	140	192	159	151	222	120	180	130	206	138
TCAGTCACGAGCGCTT	ref_1402_RC	6	15	3	6	8	6	6	2	8	0
CTCCCGGTGATACCCT	ref_1402_RC	5	2	9	3	13	6	18	11	13	2
AGTAAGAGGAGAGTTT	ref_1402_RC	60	85	70	65	87	51	95	53	111	56
AATACCATAGCTGGTT	ref_1402_RC	21	29	20	18	30	18	33	20	39	17
CTACGAGAAGCGAATG	ref_1402_RC	5	17	7	8	12	7	14	7	23	13
GTTGGTCTGTCTTAAT	ref_1402_RC	30	39	48	15	42	30	46	22	55	18
TCTGCTTAATCGAATC	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
CGGGGGCGCCTTAGTG	ref_1402_RC	8	6	8	8	9	3	15	8	13	4
TTCCTTTTCGATCTTT	ref_1402_RC	22	25	23	11	30	14	25	12	21	17
TTGTTCAGTAGCCCTC	ref_1402_RC	12	39	35	26	49	16	47	19	35	14
CCGAGTTAGCTCGGAA	ref_1402_RC	29	48	46	35	65	30	51	30	56	37
AGGGGTCTCATTTTCA	ref_1402_RC	65	133	94	66	120	64	95	78	76	65
ATGCTCACCCCTGGTT	ref_1402_RC	3	7	5	7	13	2	7	1	4	4
AGGTACTAATCTTAAT	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
ATGTGCCTCGGAGAGG	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
ATATGAATTAAATTGT	ref_1402_RC	6	8	9	3	8	8	16	3	6	2
CAGTTACTAAGGGCTA	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
AGGTTTATTCCAGGAC	ref_1402_RC	41	61	45	31	67	30	74	50	102	49
ATCGTGTGAGTTTTCC	ref_1402_RC	7	0	3	3	7	1	11	6	3	1
ATCAGCCTCATTGTGG	ref_1402_RC	16	58	26	38	50	34	62	23	62	20
TCCTCAAGTTGTGAAT	ref_1402_RC	27	53	44	35	83	26	56	29	74	36
TCTACGTAATCTGTTC	ref_1402_RC	57	84	61	54	95	52	96	48	118	45
CTGAACCGCAGTGGTA	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
AGTCTATCTCCCGCAA	ref_1402_RC	5	5	4	2	10	6	13	4	5	4
TACGTATTCCTAGTAT	ref_1402_RC	43	61	51	53	60	28	50	39	69	26
GTCTGACTTTTAGTCA	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
TTGTTTACTTTGACGA	ref_1402_RC	31	40	35	32	42	21	35	26	42	29
GGTTCTTAGGTACGGC	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
GTGCATGCTAATGCGG	ref_1402_RC	0	6	9	2	7	2	9	3	10	1
CGGGGCAAAAGCGTTC	ref_1402_RC	21	14	19	20	22	12	17	13	22	11
GAACTACGTATGCTAT	ref_1402_RC	9	14	12	3	14	11	8	10	11	12
TGGAGCGACCTCACAT	ref_1402_RC	0	2	0	0	0	3	2	1	0	0
TAGGATTGTCGAGTGA	ref_1402_RC	6	4	11	3	9	8	16	6	9	11
TCTCATGGGAGACCAC	ref_1402_RC	20	32	25	23	35	18	34	24	28	16
AAGCTACAATCCATGC	ref_1402_RC	7	8	3	5	5	5	2	3	14	4
TGTCGTCGTGCACGCT	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
TGTTCGGATATATAGG	ref_1402_RC	21	52	36	21	55	20	47	29	43	35
TGATCATCCTAATCCT	ref_1402_RC	14	22	23	23	31	2	21	10	26	10
AAGTTGAGAGGTAGAT	ref_1402_RC	54	110	93	69	89	72	98	50	127	59
ATTTTATCGTCCTCAT	ref_1402_RC	18	27	15	15	25	12	27	8	25	8
TGCTGTCGCATATTAA	ref_1402_RC	8	20	17	14	24	7	18	12	15	10
AATGTTGATCCATGAG	ref_1402_RC	63	74	55	55	90	50	59	51	79	51
TAATCATACTCTATGA	ref_1402_RC	21	28	26	21	21	15	36	14	29	16
ACCTCTGTTAAGCGGG	ref_1402_RC	0	3	2	1	1	1	2	3	2	2
GCTGCTTCGCAAAGAC	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
ATTATTTGCCACAGAC	ref_1402_RC	19	14	16	16	17	11	15	11	27	15
GCTCACTCGTCCCGAG	ref_1402_RC	0	0	0	0	0	0	0	0	0	0
AGACCAATTAGCCACC	ref_1402_RC	4	22	18	14	30	13	19	12	19	10
GTCTGACTTTTTAGTC	ref_1402_RC	54	128	80	92	147	54	148	69	119	75
CAAGGTTTTACATATT	ref_1402_RC	95	140	86	87	134	86	136	67	135	62
TCTCGATTAACACCAT	ref_1402_RC	10	20	10	11	17	12	20	11	22	13
GATCGCGCTGCATTTT	ref_1402_RC	11	14	19	10	15	13	11	7	17	17
AGCCCTCGCCAAAGTG	ref_1402_RC	34	67	42	54	93	37	78	30	100	35
CTTCCGTCCTGTTGTT	ref_1402_RC	60	94	77	53	108	53	94	38	120	72
GAATGTCAGCAAGAGT	ref_1402_RC	16	19	18	12	16	16	19	9	16	6
CATAATTGATGCAAGG	ref_1402_RC	158	248	182	162	266	177	300	151	304	119
TTATCCTGATGGATTG	ref_4486_RC	36	66	40	41	72	40	71	50	70	28
TCCCCATGTTGTTCCG	ref_4486_RC	5	26	13	4	18	9	21	8	15	12
TCCGGTTCAGGATCAC	ref_4486_RC	15	27	11	11	28	15	15	16	38	18
CCTGGCTGTGTGCGTC	ref_4486_RC	5	36	5	5	48	6	45	5	56	2
CTCTCGACGATGTAAC	ref_4486_RC	3	4	5	5	8	2	6	3	6	4
ACGTGTATTGGTATAA	ref_4486_RC	2	19	8	2	6	5	16	2	10	1
GGGACTGTTGGGGTTT	ref_4486_RC	16	47	19	17	43	22	51	23	43	15
CTTAAATTGGACTCTT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
ACGAAATCCTATGCGG	ref_4486_RC	18	21	33	22	35	13	27	24	39	23
TTTGCAATTCCATCCG	ref_4486_RC	61	75	53	48	76	41	88	39	71	44
AACATCTGGTATGCTA	ref_4486_RC	1	2	0	0	1	6	5	1	2	1
CACTTACCCGGAGTCT	ref_4486_RC	0	4	1	1	6	0	5	5	12	0
CCCTGCAAGCGGAATA	ref_4486_RC	28	43	37	34	53	31	53	24	64	26
CTCCGCTATTCCAGTC	ref_4486_RC	4	20	11	6	20	9	21	9	21	7
TCCCATTAGTTGAAGT	ref_4486_RC	21	46	23	17	41	16	52	16	70	27
TTACTTTTGACCTCCA	ref_4486_RC	17	36	17	20	35	17	51	14	35	18
TCGGTAGGTTTTTGCC	ref_4486_RC	4	6	9	6	13	5	23	5	20	11
CGATTTGGCGCTGTCT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TCCCGGGCTCTATGTG	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CGTGCACATATAACAT	ref_4486_RC	48	101	46	42	93	45	86	41	134	33
TTCGGTTTTTTGGGCC	ref_4486_RC	13	30	28	21	34	17	29	9	41	22
TCCTGCAGCTTTCTTT	ref_4486_RC	14	19	12	12	26	9	33	9	19	9
TTGTAAGACATTTTGT	alt_4486_RC	69	164	85	58	132	71	161	71	179	75
GTTAGGACCCAGGCAT	ref_4486_RC	127	218	150	106	193	135	264	114	263	111
GTCCCAATACTATTCG	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CGATAGACCTGATGCA	ref_4486_RC	6	18	5	2	16	6	13	4	16	6
TGCACCATTGTTGTAA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
ATCCAACAGTCCATAG	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CATTATCCTTTAGTTA	ref_4486_RC	9	21	12	14	18	11	31	12	14	16
ACGGTCATTGAGCCAA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
AGCCCTTCGGTTGATT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TCTGCATTTACACGTG	ref_4486_RC	25	51	36	31	23	23	49	21	29	26
GTCTGTGCGTCCTTTA	ref_4486_RC	60	103	67	52	112	62	135	45	136	51
TGCCTCCACTAGGTGT	ref_4486_RC	21	51	32	29	50	20	50	12	40	18
CTGCGGTGTTTCACGG	ref_4486_RC	19	44	33	14	41	15	55	14	54	8
GGACATAGCACCTAGT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CTGGTCGTAGTTTGCT	ref_4486_RC	26	33	14	24	36	23	41	22	34	27
TCTTCAGGGGAAAAAT	ref_4486_RC	10	13	9	8	22	7	9	6	16	11
TTTTTCGAGACTTATT	ref_4486_RC	12	15	12	5	14	7	21	9	14	10
CGATTTGGCGCTAGTA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TTTTGGTAGCACTTGT	ref_4486_RC	107	228	130	104	266	108	272	105	249	112
CTAGCATCTCTTTACA	ref_4486_RC	29	63	40	35	93	33	75	32	82	31
TCACTCTGTCAGGTCA	ref_4486_RC	19	29	22	8	29	12	30	8	25	8
GGCTGTTACTTAGGCT	ref_4486_RC	1	6	1	5	6	6	9	0	4	5
TCAGCATTTACACGTG	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
GATTTAATCGGCGCAC	ref_4486_RC	15	28	25	10	30	19	33	12	46	17
CTTGAAATAACGCCCC	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CACTATTTACACTGCG	ref_4486_RC	46	86	49	36	100	37	91	45	100	43
GCAGCTCCCTTTTCTT	ref_4486_RC	5	2	2	2	9	4	5	9	9	3
GTACTTTAGTTCCCTA	ref_4486_RC	40	74	38	33	68	27	83	33	78	22
TGCGGCGCACGCTCTA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CGGCGCTATTGCAGCT	ref_4486_RC	46	121	84	51	126	56	110	59	115	53
TACTGCGGGCGCGGGC	ref_4486_RC	22	54	36	29	56	30	62	26	52	25
GACTATGAATGTTCTG	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TAAACCCGTTTCGCGT	ref_4486_RC	46	63	52	34	76	31	71	30	59	38
ACGCGTGGCCGGGAGA	ref_4486_RC	8	5	6	3	5	1	10	4	11	4
CCTTCAGCAACTGGTC	ref_4486_RC	5	4	3	3	12	0	11	2	7	3
TGGCGTGTATTTCACT	ref_4486_RC	15	31	20	19	32	20	35	19	31	11
GCATTGTTGCCACAAG	ref_4486_RC	14	40	32	42	38	23	40	29	50	19
CCGTTTCATCTAGTTA	ref_4486_RC	40	43	41	20	56	27	62	32	67	29
ACGGAGGCTCCATAGT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
GGAGGAATTTCGCGGT	ref_4486_RC	30	33	34	44	80	46	64	37	68	34
TTCTCAATGAAAACTG	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TGGTGTCGTAAACAGA	ref_4486_RC	22	37	19	16	30	10	41	15	36	14
GCTTGCTCTCTACCCT	ref_4486_RC	68	137	76	72	129	75	137	80	123	46
GGTTTACCACGAGAAT	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
GCCTCTCTTCAATTGC	ref_4486_RC	7	13	18	14	18	4	24	8	27	7
TCGATCGCGCGCATTT	ref_4486_RC	34	33	37	32	52	40	48	43	53	34
ATGCCCTTGACTGCTT	ref_4486_RC	48	81	68	41	79	42	93	46	100	41
ATGCTCCATAGTCAAA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TATCGCCCTCTGTTTT	ref_4486_RC	6	4	5	4	4	4	4	7	7	4
GTCTCCTATCTGTTTA	ref_4486_RC	29	56	33	26	45	32	49	38	52	23
AGCTGTCCCAGGGGAA	ref_4486_RC	10	20	15	12	21	7	13	9	17	8
CGGGGTAGTGAACCCG	ref_4486_RC	5	10	8	3	8	4	6	7	4	5
GATACGGTTACCACAG	ref_4486_RC	83	135	114	76	142	75	122	80	173	58
TCGTTGGGCCAGAGAT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TTAAGACATAATTCTA	alt_4486_RC	38	85	40	24	95	30	105	28	112	22
GTGCCGGTTAATAACG	ref_4486_RC	3	10	6	6	16	3	16	2	5	12
TAATGTCATTTATCAA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CCACTACGTCGCACAG	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CTCTTCGTTTCCCCAT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CCAGTGTTCCATATTC	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
GTCCGGAGACGTTGGA	ref_4486_RC	22	31	25	16	33	20	46	14	43	21
CGGACAGTTCGCCCTA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TGCAACAATGCTTCTT	ref_4486_RC	3	14	15	11	11	5	21	8	19	9
GAACATCGAATCGCGA	alt_4486_RC	42	78	49	66	67	49	83	36	86	45
GCATTCTCTCGATTAC	ref_4486_RC	5	4	3	4	3	4	5	1	9	1
AGTTTAACATTTAATA	ref_4486_RC	1	10	3	5	6	3	12	4	6	2
CCTCCTGACGCCTAAA	alt_4486_RC	36	76	36	31	86	28	68	35	72	26
ACTGAATAGTAAGCCA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CTTGCTCTTGTCTTTC	ref_4486_RC	29	44	49	30	68	38	43	43	61	40
GGTACTAAGCATGGCC	ref_4486_RC	174	242	250	171	269	169	270	184	286	168
GGGTCACACCCGGTTT	ref_4486_RC	30	36	32	34	46	48	48	31	35	26
CGATCTTCCATAAGTA	ref_4486_RC	4	1	3	0	2	1	2	1	4	6
CTCTCTTTGTTAGTCC	ref_4486_RC	29	29	32	14	32	12	53	23	41	20
CCAGAATTCTTTACTT	ref_4486_RC	18	35	19	21	44	9	47	12	44	16
TTGTTGACACAGAAGA	ref_4486_RC	13	23	12	11	14	10	28	13	20	13
ACCCGTGCCCCGTATT	ref_4486_RC	78	162	115	98	140	80	169	77	201	69
GTGTTGGGTATTGATC	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
AGAGTTAGAGGAGGAT	ref_4486_RC	24	53	49	37	54	32	72	25	75	29
GTCCCTTTGACCTCCG	ref_4486_RC	14	21	22	11	15	11	21	8	25	11
CTCTGGGATGGGTATG	ref_4486_RC	19	29	27	12	41	22	37	14	43	22
TATTGACTAGCGCTCG	ref_4486_RC	8	50	21	19	37	19	40	11	33	19
CTCGGTTCGTGGCCAT	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CACTCTACTAAATTTT	ref_4486_RC	22	21	13	9	22	13	22	8	28	16
GGTTACCTGGGTGATC	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
CTCTGGGCCGCATCCG	ref_4486_RC	20	64	52	42	43	24	67	27	70	21
GTGGCGCCTAGTCTTT	alt_4486_RC	27	66	25	32	44	27	52	26	67	25
AGAAAGAATCGAGGCG	ref_4486_RC	18	34	22	20	46	26	41	28	50	20
GCGCAAAACGGCGGCA	ref_4486_RC	48	91	57	54	72	51	81	46	72	42
CCTTTACAGCCATTAA	ref_4486_RC	12	21	14	11	29	16	14	12	31	5
GCCCAGAAGACCTGGC	ref_4486_RC	17	42	28	34	69	24	51	26	50	17
TTTAATTTGTTCACTC	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
GGGATCATGTCATCTA	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
GCGGGATTCCAAACTC	ref_4486_RC	26	59	42	34	54	29	46	25	53	31
GGCTCCCCCCTTATCT	ref_4486_RC	3	5	1	2	5	0	6	0	5	0
GGTGGCCTCTGGTCGC	ref_4486_RC	0	0	0	0	0	0	0	0	0	0
TGTCGTTCAGCTCACC	ref_4486_RC	6	13	8	3	20	13	10	8	10	6
ATTGGCATGCTCGGCA	ref_4486_RC	42	68	47	37	68	40	55	33	63	31
ACCCGTTCTTTCCAAA	ref_4486_RC	49	97	70	51	107	44	107	33	102	52
TGGGGGGACCAAACCT	ref_4486_RC	62	135	71	72	143	70	117	53	174	62
TCGCAAGACTCTAAAT	ref_4486_RC	104	161	153	93	176	107	212	87	215	84
AGATGTGTAATGTCGC	ref_4486_RC	155	240	193	124	276	141	270	150	298	152
GCATCTTCGCCTTTCG	ref_4486_RC	0	6	4	8	8	4	8	3	5	7
AATCCCACTTGGTCCT	ref_4486_RC	15	28	24	19	28	18	35	16	22	12
TCCACATAATCCTCTC	ref_4486_RC	69	72	48	52	93	49	77	48	108	54
TACATGAGCTCCTTAG	ref_4486_RC	22	51	42	17	33	25	38	18	49	27
GTTTAAGGACCTCTAT	ref_4486_RC	9	6	6	5	14	7	14	3	21	2
TGCGGCGCCCGCTCTA	ref_4486_RC	94	141	95	90	177	75	170	79	182	107
GTATATAGAGAAGACG	ref_286_negative	67	82	81	85	91	66	92	61	93	69
GCAGATTGGTGTGATG	ref_286_negative	14	32	11	14	20	25	28	10	13	14
TGTTTTGGACAGTCAT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
CCTTGGTCCGATACCC	ref_286_negative	15	40	26	17	33	15	35	21	48	16
GGCTGGAGGGCTCGTT	ref_286_negative	61	98	84	38	103	57	81	57	100	66
GGTACAAAGCCACCAT	ref_286_negative	17	19	24	18	38	16	36	13	27	20
TGGAAGGGCGGCCCAT	ref_286_negative	90	112	98	98	138	72	129	82	139	72
TGGCTAATTTTCGGGG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GTCCAGCTGGTTGCTG	ref_286_negative	22	24	24	15	37	19	40	19	31	11
TATCCCAAAGGTTACG	ref_286_negative	24	34	29	23	50	22	29	20	35	14
GAACGTACGTATGATC	ref_286_negative	62	104	87	61	106	73	113	50	108	47
CCTTTCTCGTTATTCT	ref_286_negative	90	134	104	88	142	109	166	66	172	80
CCTGTGTGTGAAACGT	ref_286_negative	8	9	3	4	9	3	6	5	7	5
TCTTTGGGCGACGGTG	ref_286_negative	120	271	133	137	234	114	328	110	308	130
TTGTGAGAGGTCGCTC	ref_286_negative	7	12	3	5	8	8	4	5	12	7
TTCGGACCTATCACGC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AAAATCCGCATCTCTA	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GAACGTTCTAAATCAC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GTGTCATGGGCCCACT	ref_286_negative	8	6	7	7	2	2	6	6	8	5
GAAATGGGTTATAGTG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AACATCATCACCGGGC	ref_286_negative	22	18	28	18	25	13	40	17	37	15
CAGGTCTCTGCCTCTG	ref_286_negative	6	18	7	4	21	7	29	12	22	15
GTGTTAAAACGAGGGA	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GTTTTTGGACCGGTAC	ref_286_negative	37	79	44	32	51	38	58	27	61	40
ATTGATGTGACAGTCG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TCTCGCCCAGAGAAGT	ref_286_negative	7	4	6	3	3	7	10	3	14	4
AGGGAGCTATTCCACT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GTTGCTTTACCCGAGG	alt_286_negative	12	11	7	9	9	4	11	9	7	7
TAAATTCTGAGGTGAA	ref_286_negative	11	14	17	9	17	22	12	9	17	7
GTACAGTACAGTACGT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AGCCCGCTTTCAGTGA	ref_286_negative	3	6	4	3	2	1	4	2	4	1
GTAGCGGAAGTATGAG	ref_286_negative	14	20	28	17	15	28	31	21	30	16
TATAATAGCTCGCTTC	ref_286_negative	30	74	46	39	60	28	67	39	62	36
CTTATCGTTTTTTACG	ref_286_negative	146	216	162	164	232	135	200	139	211	129
ACTTTTGTATTTTGGG	ref_286_negative	48	35	34	37	58	32	71	48	61	25
TGTTCCAGTTAGCTGG	ref_286_negative	24	47	35	26	59	29	34	23	43	23
CTGTACGTCATACAAG	ref_286_negative	3	6	1	4	9	3	3	3	8	4
GACGCTTCCACTAAAT	ref_286_negative	10	11	9	6	14	11	12	10	9	11
AGCCTATTGTGGTTCT	ref_286_negative	50	49	53	31	84	37	69	39	72	37
TCATTGCGGGCCATAG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AGTCTGTGTCTTTACA	ref_286_negative	4	3	0	3	10	2	2	3	1	3
ACTATTTTCTAGGAGT	ref_286_negative	11	20	14	12	17	7	31	13	29	21
TCATAGGCCTTATGTC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GTCCTATCTTAAATCT	ref_286_negative	15	41	22	25	34	20	35	14	32	19
GGCCTGGCTCTGGTAT	ref_286_negative	37	82	40	43	50	40	65	23	71	36
ATTATTCCTTTGTTAG	ref_286_negative	24	20	17	16	14	13	26	8	23	18
TAGCGGTTGTCAAGGT	ref_286_negative	13	16	21	15	13	5	18	8	25	9
GAATCGGATCGTTTAG	ref_286_negative	8	12	13	11	15	7	16	7	19	5
GTCTAGTGTATTGTTC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
AGGCAGGGCTATTTTT	ref_286_negative	19	30	14	18	17	10	24	14	20	19
CTCAGGTGGTTCACCA	ref_286_negative	36	56	29	45	58	32	76	49	60	15
ACACCTCCTAGTTGAT	ref_286_negative	17	24	17	18	22	22	22	15	24	7
GAGGTTCTTTATAATA	ref_286_negative	13	26	22	22	26	15	19	20	29	16
CCGGGGGTAGTATCTC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AGGGGCCAATCTATGT	ref_286_negative	16	18	12	17	16	6	20	7	15	11
GTACTAATCCTGATGA	ref_286_negative	8	13	7	2	12	0	2	1	7	9
GAGTTTGCTCGCGTCC	ref_286_negative	25	59	42	34	79	25	69	39	72	22
TATGTACTGAGCCGGC	ref_286_negative	26	27	41	27	40	20	39	19	39	23
ACTTTGGGCGACGGTG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
ATACAACGGGCTCGCC	ref_286_negative	31	62	44	47	68	30	69	30	63	42
TTTAATACAGATTGGC	ref_286_negative	170	241	197	178	245	157	248	163	249	144
TGACTGCAAGGGTGAC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AGTGTATTTAGAGGCA	ref_286_negative	6	14	10	14	13	11	23	16	14	17
TGTTTCGTCGTGTGAT	ref_286_negative	20	39	30	14	19	21	26	19	26	24
CCCATTGAGTATTTCT	ref_286_negative	3	3	5	1	5	3	7	1	3	2
ACAGCAATGAACCCAC	ref_286_negative	8	4	4	6	5	5	3	3	7	9
TGCATTTTGGAACAAG	ref_286_negative	7	7	1	4	4	6	6	5	9	5
GGTTCGGGGTTTAAGT	ref_286_negative	32	67	66	36	87	48	52	46	61	51
TCTTCTTCCTGACATT	ref_286_negative	12	24	19	30	31	23	38	12	26	16
GGCCGGGGTGAACTGG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GAAGATTAATGATCGA	alt_286_negative	18	47	30	28	32	33	47	26	60	25
TGTATCGGTTTCCGAG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
ACATGGGTATTAGTGA	ref_286_negative	5	12	12	15	20	9	15	15	14	15
TATATTCTACGCGATG	ref_286_negative	17	38	16	15	34	7	25	22	21	17
ATTCTCTCGGCGCTTC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
TCTCGTAATCCGTATT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
TCTGTATGTTATATTG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GAAAAGTGCTTTGCAC	ref_286_negative	28	54	34	32	64	35	72	26	89	30
AGTCTCAGCATCTAAT	ref_286_negative	9	15	6	14	18	7	20	10	18	6
ATTCGTAATATAACAT	ref_286_negative	4	6	6	1	5	4	1	7	7	3
AACAAGCCCTTGCTAC	ref_286_negative	5	10	6	4	13	8	5	4	8	8
GCTCTGTGCCACATGT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
TCATCGTTCTTCGGCG	ref_286_negative	73	104	88	84	98	73	92	56	91	57
ATTTTGGGATCTTGCC	ref_286_negative	19	21	26	19	40	19	40	29	25	18
CAACATTAGTCCTGCA	ref_286_negative	10	12	11	10	9	5	13	7	8	11
GTTAGCTGCACTCGGT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AGTTGCCGGTCCGGCC	ref_286_negative	7	21	17	17	20	12	16	11	23	14
ACTGCACCATGTCAAT	ref_286_negative	5	6	7	6	5	0	7	4	6	2
CAGGTCTACTCGGTTT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
TTCCTTCTTATCGTGT	ref_286_negative	43	55	45	32	58	31	50	31	64	35
TTACCTTGTTCTCTAC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GCGTTTTTCTAAGCCG	ref_286_negative	19	34	34	16	40	21	32	20	53	24
ATCCTGGGACCCGGGG	ref_286_negative	43	59	57	53	92	49	74	36	75	32
AGTTCATTTCCGGGAC	ref_286_negative	4	4	3	6	7	4	4	8	6	6
TAACGACCCCATTTGA	ref_286_negative	0	0	0	0	0	0	0	0	0	0
CGAGCGGCATTCGGGC	ref_286_negative	17	30	38	26	38	26	33	18	45	17
TTTGGAGAGATCGCTG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
ATTGATGTTCTGTGTC	ref_286_negative	33	47	33	27	58	34	45	40	33	31
CTAACCAAGATCCCTA	ref_286_negative	3	7	8	7	7	1	3	4	6	4
GTGTTAGGCACGACAA	ref_286_negative	0	0	0	0	0	0	0	0	0	0
ACAATGGAATGCGTTA	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GGTTACAGATAGGATA	ref_286_negative	0	0	0	0	0	0	0	0	0	0
CGAGTTCGCTTATCGT	ref_286_negative	29	36	34	21	53	27	38	25	48	24
ACGGCATTGACAATAG	ref_286_negative	12	25	22	16	31	12	31	23	22	8
TTTTAAAGAGCTTTCC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
TATTTCGGCTTCATAC	ref_286_negative	33	36	43	32	50	21	49	42	34	34
TCTATGTACTCCATAC	ref_286_negative	26	68	36	34	69	23	58	21	57	25
GGCTTTGTCTAAGTTA	ref_286_negative	24	49	44	48	52	41	65	42	72	29
GGACAGTCCCGTGCTC	ref_286_negative	40	86	67	63	68	56	80	37	93	41
TTTTTAGAAGATCGCA	ref_286_negative	61	78	64	56	85	55	84	58	65	55
ACGGATAGTTGGTAAT	ref_286_negative	0	0	0	0	0	0	0	0	0	0
CAGGTGATCTGCGACC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
ACACTGTTTCGTCTAC	ref_286_negative	14	27	24	19	34	17	22	22	26	14
CTCGTGTTTAACCTTC	alt_286_negative	12	9	10	5	17	8	9	14	6	8
TCGGATAGTTGGTAAT	ref_286_negative	320	398	352	334	404	332	445	290	430	266
CTCTTGATTTTAGGTC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
CGGGAATGTTCCGGGG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AGTAATAATTCAATGG	ref_286_negative	123	121	128	133	106	119	155	126	151	82
GATCGCGAGCCTACCT	ref_286_negative	6	14	6	5	11	5	7	9	12	3
TGCTTGGTCTTATCCG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
GGCCCCTTAAACTCTG	ref_286_negative	3	3	5	2	5	1	2	3	3	1
AGTCTGGCCGCTATGC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
AGGGGCCGATCTATGT	ref_286_negative	123	169	133	114	173	127	148	91	171	103
GCATACGCGAAGGGCA	ref_286_negative	7	8	22	6	10	5	10	7	17	9
ACAGCATCAGGGATTT	ref_286_negative	56	85	66	82	75	66	88	46	97	51
GACGTTTCACGAGCAT	ref_286_negative	12	22	27	19	29	12	28	11	35	15
GTTGTTTACTGCTTTG	ref_286_negative	0	0	0	0	0	0	0	0	0	0
TTAAATACAGATTGGC	ref_286_negative	0	0	0	0	0	0	0	0	0	0
TGGACCTCGCATTTTA	ref_286_negative	41	48	32	28	47	25	58	19	56	26
CTCTCCTTACGTCGTC	ref_286_negative	50	126	53	50	116	49	144	56	131	42
TGCAGTTGGCCTTACA	ref_5846_new	10	33	10	9	25	15	50	15	28	9
GTTTGCTAGCGCTCAC	ref_5846_new	98	195	103	86	198	89	213	75	230	70
TCTTTGGAAATGCTTA	ref_5846_new	2	6	3	7	12	4	16	9	10	4
GCTCAGGCCAGTTCTG	ref_5846_new	28	93	20	28	75	39	104	27	91	20
CCGTCGACCAGGTTTG	ref_5846_new	12	51	14	4	42	8	47	15	50	7
TTCTATTAACCGTCCT	ref_5846_new	22	32	14	16	53	21	48	14	53	18
AGGAAGTTAGAACGTG	ref_5846_new	4	26	20	8	21	13	27	14	23	9
AGTTCGGAGTCGTTTA	ref_5846_new	34	79	56	37	97	36	81	31	73	42
TCTTATCAGCTATGTC	ref_5846_new	76	156	70	73	184	65	175	66	154	88
GGCCCTTTTTAATGAA	ref_5846_new	7	12	8	10	15	7	18	6	9	4
GTTTACGCTTCTACTT	ref_5846_new	17	32	27	28	47	24	54	20	45	14
TTAACTGTCAAGTTAC	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TTCTCGCTACATGAGA	ref_5846_new	12	53	25	15	46	20	44	15	54	18
CAACAATGGATACGCG	ref_5846_new	16	41	29	18	30	27	33	19	44	27
AAGAAAGCTCTTCCCT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TTGCGTCTGGTCCATC	ref_5846_new	8	8	9	4	15	7	10	2	14	3
CTTCCTTGGCTATTAT	ref_5846_new	3	9	6	2	5	2	9	5	8	4
TAATGCATCTAGTGTG	ref_5846_new	47	128	65	66	131	51	135	51	152	47
ATGTTTGGGTCGGAAA	ref_5846_new	0	0	1	2	0	0	3	0	0	0
TGGCCCTTTGTATGAT	ref_5846_new	34	80	40	43	104	32	110	48	108	28
TGTTCCCCGACCTGGT	ref_5846_new	19	91	23	23	78	18	104	25	101	17
GGTGCGCTATATGTTC	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TGCTATATAATCGCGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
ATCTGAGGTACAGATT	ref_5846_new	48	167	74	58	170	68	177	51	157	79
CCTTGCCTGTTAAAAA	ref_5846_new	19	56	14	21	63	15	54	29	58	24
CGCAATCAAAACCTCA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
CCTGAAAACTGGATTT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TGCGAATGGGCGGGTC	ref_5846_new	117	241	110	93	247	98	224	87	241	95
TCACAGTCATGCGTGT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCTCCTCTCCGATGCG	ref_5846_new	47	99	38	49	94	40	112	47	119	62
TATAACTTTCCGAAGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
AGTCTGGTTTGTAGGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
AGCAGACGTCATCGCC	ref_5846_new	6	19	7	11	11	7	11	5	6	4
GATAACCCCGAGAGCT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TTGATTGTTCCTGCCT	ref_5846_new	18	48	29	28	57	22	60	27	78	31
ACAGGAGTTCACGGAC	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCTTGGAGATTGCTGG	ref_5846_new	5	4	4	3	15	0	4	1	7	2
TAGTACTGTTACACAA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
CCGATTCACGGTCATG	ref_5846_new	25	43	27	17	40	16	53	13	56	21
ATTCTTGGGCTTACTT	ref_5846_new	70	120	57	63	109	60	145	47	137	52
GCTTGTGCAAACTTGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCGTCAGCCCATGTTC	ref_5846_new	27	64	36	24	97	43	78	22	79	37
ATCCATCGGTCTTGTG	ref_5846_new	12	43	19	16	32	15	37	17	35	12
CTAGCCAGATATTCGC	ref_5846_new	17	39	16	9	31	9	26	14	48	10
GGCTAGATGTTGCACC	ref_5846_new	49	113	35	23	114	29	92	35	112	27
CGACCAGGTTTAGTTA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GTATCTTGGGGCAACG	ref_5846_new	0	3	3	2	2	0	6	2	1	0
GAGAATCGCTTGCATC	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GATTGGATGTACAATT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
AGACGATATCATTGTT	ref_5846_new	6	12	4	9	13	5	11	10	25	3
CTGTCACTCCGATATA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TACCTAGCATGGTTTC	ref_5846_new	2	7	6	2	6	2	8	1	11	2
GTCCGGAATTTGCGCT	ref_5846_new	5	13	12	4	8	5	22	5	15	5
GTGAACGTGATACCTT	ref_5846_new	0	8	4	1	4	0	3	1	10	1
GATGCGCGTTGTGACA	ref_5846_new	18	57	26	15	71	17	79	19	54	19
CTTCTTGCGGAACGTT	ref_5846_new	4	10	8	6	9	3	11	2	11	1
CCTCCCTATATGGATG	ref_5846_new	7	42	20	13	47	9	39	11	36	14
TGTGCCGTTACATTAT	ref_5846_new	17	31	36	23	51	26	58	26	39	30
TGTGCCGGGTTAGGTT	ref_5846_new	3	25	12	8	17	4	16	12	23	4
TTTATCGTTCGGACGT	ref_5846_new	32	73	42	33	103	30	76	33	108	36
ATGAGCGAGAATCCGT	ref_5846_new	59	130	71	36	123	57	141	48	138	59
CTGGGTGTAATGCATT	ref_5846_new	27	72	38	28	60	40	71	26	81	36
ACTCAATTTCGCGCAG	ref_5846_new	7	13	4	6	9	6	11	9	12	6
TTCGCTTGGGGGACGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCCGTTCACTAATAGC	ref_5846_new	1	6	3	2	14	1	6	2	9	0
TCGGTCAAGGAGGGCC	ref_5846_new	15	84	19	18	85	23	98	13	101	9
CAACAACTGATGACAT	ref_5846_new	4	18	10	5	7	13	9	3	12	6
TTCGACTTTTAGTATG	ref_5846_new	13	50	26	20	55	16	46	24	54	17
CTGTTACCTACCCAAT	ref_5846_new	43	152	34	28	123	44	135	46	145	32
GACATTTACTCTGTTT	ref_5846_new	14	19	7	13	25	17	28	8	26	4
GACTGCTTCTACTTGG	ref_5846_new	2	5	5	4	5	5	6	2	8	3
GGCAATATCTGGGTGG	ref_5846_new	7	3	2	0	6	2	12	1	7	1
TTACGGTTTCGGGACG	ref_5846_new	12	29	27	15	21	9	18	9	21	12
GCGATCCCATCGTTTG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
CTCGATAGCTGTCCGA	ref_5846_new	11	49	22	28	42	14	47	17	52	20
CGTTATACGACATGAT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCATACCACGGAGTCC	ref_5846_new	9	33	9	16	30	12	24	10	24	22
TTGCGCCAAAGATCGT	ref_5846_new	24	106	44	37	84	30	103	21	120	29
CTGGTGTGGCTTGGTT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TGCTTCGCTCGATCGC	ref_5846_new	5	13	7	5	19	4	17	4	7	5
AGTGGGTCCTTAAATC	ref_5846_new	36	93	60	36	89	32	100	26	75	36
TGCTGTCTTACCTGGC	ref_5846_new	3	12	12	7	10	10	13	4	14	4
ACAACTGACACCCAGC	ref_5846_new	16	31	15	16	29	9	26	15	30	17
ATGTCGCCAGTTACGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
CATTAGTAAAACCTAT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCGTCAGCCCATATTC	ref_5846_new	0	0	0	0	0	0	0	0	0	0
CTAGCGTGAGCTTCCT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
CTCCCCCCGTATACAC	ref_5846_new	6	32	10	10	45	15	43	7	34	12
CGACCGACATGCCTGT	ref_5846_new	3	8	4	3	8	2	7	1	4	1
GTTTGGGCGAAGTACG	ref_5846_new	9	11	9	11	12	10	11	12	20	9
TCTCTTGTATGGAGTT	ref_5846_new	5	7	7	3	21	4	12	3	15	6
TCCATGATCATAACTA	ref_5846_new	3	6	8	5	8	2	9	0	11	6
GTCTATGCATAGGGGA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GTGCCGGGTTTAGCCA	ref_5846_new	23	49	20	16	52	26	51	18	59	16
ACAGCGCCATTGTGCA	ref_5846_new	44	54	36	31	59	29	50	24	73	21
TTTAATGTAAAGTCGT	ref_5846_new	16	26	18	21	30	17	56	12	51	19
TGCGTTTATGCAACAG	ref_5846_new	18	28	25	22	17	20	16	18	23	26
TGCAATATAGGAGTGG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TGGCATTTCTGAATTT	ref_5846_new	1	0	0	0	1	1	1	2	1	0
GTCGTGTTTTTGGTTC	ref_5846_new	9	21	8	14	23	12	18	9	8	6
CTCTCGGCCCAGCTTT	ref_5846_new	23	44	18	24	48	22	46	14	64	16
CTGATTGAGGTTCGTC	ref_5846_new	22	80	31	30	92	26	71	26	87	28
GCCCGTTTATACTTTC	ref_5846_new	24	52	31	27	56	23	65	19	48	27
CCGAGGACTTCTTTTT	ref_5846_new	19	22	18	7	19	11	39	7	27	14
GAAACTCCTGATTTAT	ref_5846_new	6	17	13	11	15	11	20	13	27	9
TTTACGCCGTGGCAGC	ref_5846_new	9	26	24	20	18	11	22	15	21	20
GTCCCCCGGAAATCCT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCCGGTATTTCATCGG	ref_5846_new	1	29	6	4	26	3	17	8	26	10
GTACAAGAATCCGGGT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
ACTCATGCGCACTGCA	ref_5846_new	9	11	5	9	20	4	14	5	18	4
TCGGTCGCTCTCCCGA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
TGTCAGACGGAATTGG	ref_5846_new	5	2	2	2	4	0	2	0	1	1
CTCCTACCACTTTAAG	ref_5846_new	14	14	13	14	18	11	13	12	30	8
TTTCCCGTTGAGCATG	ref_5846_new	12	19	12	4	11	13	11	5	21	6
GAATGGCATGAACCCT	ref_5846_new	11	39	16	16	25	8	31	14	28	14
GGGTCTTGTACGGGTT	ref_5846_new	0	8	4	2	0	3	7	4	5	2
TGTATCGGCAGATCTT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
AGAGTGGTACGTTGGT	ref_5846_new	21	47	28	26	69	19	56	16	69	8
GTGATCACCGGGCTCC	ref_5846_new	52	89	48	49	106	49	84	41	97	41
GTCTGCCTTGAGCTAC	ref_5846_new	15	32	17	9	32	15	49	19	44	12
ACCCCGATCTCAGCGT	ref_5846_new	19	29	16	20	33	10	28	18	30	7
GATAGCTTACGCAGTC	ref_5846_new	7	33	13	15	34	17	35	15	36	20
TTTCCTCTATAGATCT	ref_5846_new	25	21	10	13	23	4	32	12	39	15
TGGATCTCTAGAACAG	ref_5846_new	0	0	0	0	0	0	0	0	0	0
AGCTTACCCCCCATCG	ref_5846_new	2	29	6	6	32	3	22	5	30	0
GATGTTCACGTTTTGA	ref_5846_new	22	46	38	28	51	16	44	25	41	18
GTGATTAGAGGTGTCC	ref_5846_new	6	12	12	6	15	3	16	4	11	4
TCTGCACGGGAATTAC	ref_5846_new	18	52	27	15	45	14	40	20	44	16
GCGTCTGTTCCAGTTT	ref_5846_new	3	4	3	5	8	2	8	1	7	8
AAGATCGTGGCTAAGT	ref_5846_new	11	19	4	7	20	10	23	4	26	6
GCAAGGTTGTGCGCGG	ref_5846_new	25	42	38	35	52	30	63	30	75	18
CAGGGGGTGTTTTTTC	ref_5846_new	11	37	16	13	52	19	38	18	43	13
CTGTCGCTTTGAAATG	ref_5846_new	65	119	70	70	136	79	162	51	141	70
TTAGTTGATCGCACCA	ref_5846_new	10	18	9	8	29	14	21	15	27	9
CTATCCACTTTAAAAT	ref_5846_new	7	17	7	8	16	7	12	4	13	3
TCCATTGGGTCTACGC	ref_5846_new	16	45	18	9	50	11	19	10	57	14
AGGTATGATCGGACAC	ref_5846_new	2	0	5	1	2	5	5	1	4	3
TGACCGTGTATTCTGT	ref_5846_new	0	0	0	0	0	0	0	0	0	0
CAAATGCATCCAATGG	ref_5846_new	19	36	24	21	43	17	47	23	49	18
TCTACCAGTACTTGAG	ref_5846_new	33	59	25	33	58	35	48	25	82	17
ACAAATTCTCGAAGGA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GCTTATCAGGCCTTTT	ref_5846_new	26	21	28	16	43	25	46	26	46	24
TGCTCGGCGTTAAGCA	ref_5846_new	40	75	35	36	74	41	54	30	67	25
GCCTCTAGGATTTTCA	ref_5846_new	30	82	39	25	74	29	77	28	75	22
CCCGGACTCGCGAACG	ref_5846_new	35	55	26	19	42	17	64	23	75	17
TTTGTATCATGTACAT	ref_5846_new	5	14	12	6	12	9	15	6	24	3
CTAGCAACGGATGGCA	ref_5846_new	0	0	0	0	0	0	0	0	0	0
GTTTGAATTGTTACAA	ref_5846_new	2	2	2	1	4	1	4	0	4	4
ATCCTTAACCGGCCTC	ref_5846_new	6	13	12	12	10	4	20	5	15	5
CTCCGTTGATGGTCCT	ref_5846_new	5	25	7	6	15	13	22	2	14	3
TCCATGTGTCTTGCAG	ref_5846_new	29	133	41	27	139	41	113	56	135	29
CGTAGTAACCCAGTAT	ref_5846_new	7	9	10	2	8	8	16	8	18	7
TGTATTTCTTCGACGT	ref_5846_new	12	27	22	10	23	10	31	3	37	9
CATCATGGCTGAGAAA	ref_5846_new	67	104	70	54	108	63	113	53	137	66
TATGTAGGTGGATGTC	ref_5846_new	4	17	8	8	23	16	16	5	14	9
TTCTTGATTTAGAGAC	ref_5846_new	8	18	9	7	13	9	26	3	9	6
TCGAAATTGCTCATCG	ref_5846_new	21	18	10	10	22	8	20	10	26	9
TCACAGAACTCCCGAC	ref_5846_new	2	18	5	2	16	6	18	8	26	4
GTTACTCGCCACATTA	ref_5846_new	27	45	25	20	56	23	54	17	47	17
AATAATTGACGGGAGC	ref_5846_new	16	37	22	25	26	14	44	14	39	16
ACACTACGTGAGTTCT	ref_5846_new	57	142	69	53	142	57	156	45	153	45
CTGTAGAATGGCCCAG	ref_5846_new	9	16	10	9	22	12	23	13	27	10
TTGTATGCAGTCTTAA	alt_5937_new	51	37	49	49	41	37	42	55	36	35
GGATCGAATACGAACT	alt_5937_new	11	15	4	9	18	9	13	7	19	11
CCTCACACCTGTCTGT	alt_5937_new	51	84	61	55	86	50	95	47	91	45
TGTTGGTGCCATTCGG	alt_5937_new	65	81	74	72	67	76	72	51	82	44
AGTGGTCTTTGTATTA	alt_5937_new	58	69	69	49	74	55	56	45	71	50
ACGTTTGGAGACGAAG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TTGTGGCCGCGTATTA	alt_5937_new	50	47	90	64	78	65	78	61	82	61
TGTATGCAGGGCTCAT	alt_5937_new	0	0	0	0	0	0	0	0	0	0
GGTGTTGTACTATGTA	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TGTGAGTGATGCATAT	alt_5937_new	25	30	34	25	37	39	32	24	40	29
ACCTTGCATATGAATG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
AATCGCTACGGGACAT	alt_5937_new	79	73	61	80	81	77	91	57	72	68
GGGGTTAATAGGACAG	alt_5937_new	15	26	19	29	27	18	19	28	25	25
GTTAGGATGGCTGTCT	ref_5937_new	304	370	390	334	386	350	405	338	441	312
ATTATTCTACTCTTGC	alt_5937_new	12	19	15	15	17	19	21	16	14	15
TAAATGGTGGGTTCGT	alt_5937_new	21	26	24	20	9	34	23	14	24	24
TTGAGCATTGTCTGTT	alt_5937_new	146	192	200	173	227	165	193	179	231	149
TTTTATCACCTTGTTA	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TGAGTTCAAGTGTCAG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TTTCATACGGAAACAG	alt_5937_new	28	53	56	48	55	49	47	51	52	53
AGCAGGGCAGCTCCAA	alt_5937_new	0	0	0	0	0	0	0	0	0	0
GGGTTAATGGTAACGG	alt_5937_new	275	267	309	232	253	240	241	218	271	222
TCAAGTACATTTGGTC	alt_5937_new	0	0	0	0	0	0	0	0	0	0
ATCCCAGTAATGCGTA	alt_5937_new	12	19	8	10	12	14	13	17	20	14
CGAGCACGCACTTGTG	alt_5937_new	0	1	2	3	2	1	4	0	0	2
CTTCGTAACCAGTCAT	alt_5937_new	27	33	33	28	34	29	31	33	24	26
GCTATCAAGCGCGGTG	alt_5937_new	79	88	78	69	102	65	90	67	89	64
CACTTTTTGCCTTCAC	alt_5937_new	11	20	26	17	28	15	31	21	27	14
GTATGCTTCCATTAAG	alt_5937_new	90	91	117	102	146	81	126	78	109	80
TGGCGCGTTTAGTTAT	alt_5937_new	11	23	9	20	18	28	26	18	36	24
TGCCGATTGGGGCTGC	alt_5937_new	0	0	0	0	0	0	0	0	0	0
GTGCGCAATGTAATGA	alt_5937_new	0	0	0	0	0	0	0	0	0	0
GACATACTTGGAACGA	alt_5937_new	41	32	40	28	28	27	39	36	39	28
AGCTTAGCCCACGAAT	alt_5937_new	5	11	4	11	3	6	4	9	8	3
ACTCCGGCTCAGGCCC	alt_5937_new	0	0	0	0	0	0	0	0	0	0
GTTAGCATGGTCTATA	alt_5937_new	4	8	10	8	7	9	4	5	10	9
GTTCCAACAGTTATCG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TACCGTCCAAGGTTCC	alt_5937_new	0	0	0	0	0	0	0	0	0	0
GAGTTTGCCCGTGCTA	alt_5937_new	33	22	45	32	28	30	38	22	31	22
TTGATTATAGGCCGGT	alt_5937_new	49	64	87	32	62	62	59	49	70	63
AGCATCCCCACGGCGT	alt_5937_new	34	36	38	46	36	32	43	44	48	24
TGTTAGATTACCACTT	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TTCCCCCCAGAGAGTT	alt_5937_new	3	2	9	4	5	9	2	5	8	4
CAAGGCTGCTTTTTCC	alt_5937_new	50	32	59	65	47	63	44	45	56	36
CCACATTGCTAGGCAG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
GGATATTTCTACCCAA	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TTCTGGTGGGTTCAGT	alt_5937_new	28	27	39	42	50	35	28	25	45	31
CCGTTTGATTGGTAAG	alt_5937_new	12	9	14	8	3	16	8	5	11	14
CATGAAGCACGCTAGA	alt_5937_new	23	29	28	17	31	16	20	15	26	22
GCTTCGGTATGGTACG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
AAGGCCGAAATATTCT	alt_5937_new	71	74	98	78	87	78	79	69	90	94
GAGGGTCACTACACGG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TTGGCCACATCGGGTT	alt_5937_new	134	241	225	201	253	160	278	156	264	163
GCCGTCGTTATGGACT	alt_5937_new	1	2	2	0	4	0	0	0	2	1
TGATCTACTACTGCCA	alt_5937_new	10	12	15	15	13	11	14	10	15	14
CTACGGGTCCCTTCAC	alt_5937_new	9	13	6	7	8	14	14	11	14	13
GGTTGAAAATGCACAG	alt_5937_new	27	29	42	37	41	38	32	40	32	25
ATTTGGGCCACCAAAT	alt_5937_new	0	0	0	0	0	0	0	0	0	0
ACAGGTAAATCGCTGC	alt_5937_new	18	31	22	22	36	18	43	18	34	12
TTTGTACTGCTTATAT	alt_5937_new	170	162	213	179	182	157	219	178	192	151
AAGGTAAATGGGAATG	alt_5937_new	48	50	61	55	54	45	57	51	63	35
AATGGACCAAATGGTG	alt_5937_new	49	44	53	42	39	41	62	56	68	44
GCGCGCCCGGTGCACT	alt_5937_new	45	86	98	61	64	72	70	68	94	58
AACACTCAGCATCGCC	alt_5937_new	41	56	29	41	57	37	57	34	70	30
CGCGAATGATTATGGC	alt_5937_new	26	15	17	21	16	18	14	16	20	24
CTCATACACGGCTCGC	alt_5937_new	0	0	0	0	0	0	0	0	0	0
CTGTTGCAATTTTTCA	alt_5937_new	63	84	65	63	65	64	48	54	68	58
GTGTTCCCTGGGTCCT	alt_5937_new	321	308	353	348	378	322	350	317	336	278
GTGTTGCACGAGTTCA	alt_5937_new	9	5	9	7	7	4	8	7	8	6
ATAAAGTTGATCTTAG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
CGATACCTCGTTGGTA	ref_5937_new	0	0	0	0	0	0	0	0	0	0
GGTCGGTGATAACTCA	alt_5937_new	13	17	16	14	11	8	23	15	14	16
GCCCAGGATACACGCA	alt_5937_new	135	136	200	156	162	135	170	137	164	141
TTTTTCAACAGGCTTC	alt_5937_new	4	5	4	7	5	3	5	9	1	2
GGTACGGTGCAAGATA	alt_5937_new	49	42	57	38	43	39	50	35	52	59
TTATTGTCCCGCAGTA	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TTCGAACCTGGTTTTA	alt_5937_new	25	68	32	29	58	30	46	28	53	19
CTCATCGTTTCCTCTG	alt_5937_new	20	16	15	17	17	18	15	27	16	11
TAGTTGTTCAACAGCG	alt_5937_new	0	0	0	0	0	0	0	0	0	0
TTACCGATTGTGGTTT	alt_5937_new	104	127	101	102	144	92	122	84	131	95
GATGGAGCCTACGTTG	alt_5937_new	15	24	25	15	16	16	25	18	20	16
CTTCAACATACGTAGG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CAATTGCGGCCCTCAA	ref_6060_new	86	68	115	84	53	78	41	93	60	78
TGTTCGGTTGAGCAAA	ref_6060_new	52	59	78	76	61	66	74	65	70	59
CAATACCGGGTTGTAT	ref_6060_new	73	40	84	75	58	70	52	53	58	59
GCTAGCGAATGTGTAG	ref_6060_new	28	23	30	32	27	26	26	34	18	19
GGCCGATTGGGCTCTT	ref_6060_new	24	12	28	21	18	20	15	22	19	13
TTCGCCCATCGTGCTG	ref_6060_new	42	35	55	34	37	39	30	46	27	47
TTGCGTTATTAAAGCG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
ATGTTAGCCATTGAAC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CATTGTGGGTATGGTC	ref_6060_new	78	65	116	94	77	94	77	85	84	89
TTCGGGTGTCCCATAC	ref_6060_new	24	24	36	29	26	29	23	28	44	32
TCTAATGCTTATTATT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CCGTTACCGTAGGGCC	alt_6060_new	54	34	34	46	38	47	30	42	27	27
CACTACCGCCATCGTC	ref_6060_new	20	25	20	19	18	16	25	8	16	16
GTCAAAGTAGTTTTTC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GGTGGTACTTATTTTT	ref_6060_new	20	19	30	28	25	20	16	35	22	22
AAAGAATATCGTGGCC	ref_6060_new	91	64	152	109	76	105	78	103	87	98
CGCGGTTAGCCCGTTC	ref_6060_new	24	52	31	42	57	34	54	42	45	34
AAATGGCGTCGGGCGC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TCCTGAGGTTAGGTTT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
AAGCCCGCCTGACCTA	ref_6060_new	17	14	21	17	17	13	9	13	17	4
AGAACATGCCATGTAC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GAGGTATGGATGCGCC	ref_6060_new	4	3	5	4	1	4	1	1	1	3
CAGGATATGGTAGCAC	ref_6060_new	51	55	85	69	45	65	56	71	50	51
TCGTGACATGCAACCG	ref_6060_new	75	95	90	81	49	89	54	78	59	74
GGCGTCATACAACTTG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CCAAACGTCACATAAT	ref_6060_new	20	34	27	19	42	16	32	15	39	14
CTTGTGACTTGGAAGC	ref_6060_new	34	35	39	47	26	33	24	52	30	37
CCCTCGTACAGCGTCG	ref_6060_new	96	70	87	91	85	96	63	73	76	67
CCTAGTACAAAAACAA	ref_6060_new	38	24	47	53	16	40	31	57	33	44
GCTTGACTTGATAAGT	ref_6060_new	10	7	20	10	14	11	13	11	11	13
GTTTCGTTTGTTCAAC	ref_6060_new	40	33	38	66	33	45	31	43	38	39
GAGCCGTTTTCTCTTG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
AGTTAGAGACCGTCTT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
ACCTGAATTCGGGTTT	ref_6060_new	15	11	31	26	18	21	27	12	19	20
AGTCCCTACGGCTCTC	ref_6060_new	13	16	24	15	15	18	13	14	9	15
GTATTCCTCGTTTCCT	ref_6060_new	7	4	7	4	8	6	3	4	2	8
GCCATCTAACATCAGC	ref_6060_new	97	69	121	108	102	85	92	83	80	83
TTGACTCCCGCAGGGC	ref_6060_new	8	19	6	3	29	2	14	13	23	4
TTATTCTCGGTCAGCA	ref_6060_new	3	4	6	6	1	3	0	1	2	3
CTACATTGTCTTTCCG	ref_6060_new	2	2	8	5	5	8	2	1	3	0
GTGCTCGTTAGATTGA	ref_6060_new	104	80	119	104	82	100	71	93	97	87
CTATAACACTGATTTT	ref_6060_new	29	26	40	44	35	27	32	41	26	39
CGTGTGGGTCAACCAT	alt_6060_new	56	63	47	58	69	45	91	60	69	42
CTAGGTTGTTACTTCC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGACATGATAA	ref_6060_new	25	21	32	19	18	19	14	25	11	18
AGCATAGGTTTTTCGC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GTCACGGGCGTATCGA	ref_6060_new	2	2	8	2	0	3	0	1	5	2
TGCCTGGCATGAATTG	ref_6060_new	4	2	7	1	1	1	1	1	1	0
ATACGTGAGACTCCAG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GTCTAGTTACGAGTAC	ref_6060_new	72	67	85	78	76	61	92	66	71	54
TGCAAGCATCCCCACT	ref_6060_new	8	7	7	18	6	11	8	8	4	9
CGCTTGCGCACTGCTA	ref_6060_new	58	42	75	56	44	61	63	57	45	62
GATTACGTGGTATTTG	ref_6060_new	47	32	73	65	63	53	68	62	61	50
CTTTGTACTAAACTGG	ref_6060_new	4	17	7	9	11	10	11	11	17	6
ACCCGGTAGACCGCTT	ref_6060_new	34	30	45	44	43	28	42	32	49	38
GAGTACGGGTCCATAT	ref_6060_new	2	1	0	2	2	2	0	0	0	3
CCGCTCCATTGGCCGG	ref_6060_new	5	12	5	11	8	6	11	10	15	4
ACAGATCCTGACCAGC	ref_6060_new	4	6	9	4	9	6	4	3	3	5
TTCGTTAACTGGAGAT	ref_6060_new	7	7	8	7	3	9	11	6	4	8
TCGTCGCCGTATCGTT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TTGATTATCGGATCTA	ref_6060_new	29	25	29	29	16	27	17	27	19	21
CGGCCCTAACATGCCG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GTTGCTTTGTCCTTGC	ref_6060_new	212	177	245	220	182	212	182	212	200	180
TTGCGGAGGTTCGCTG	ref_6060_new	85	96	106	97	71	79	84	88	85	89
CCCTTTCGTAGTGGAG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CACAGCGCACCACCTC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TACCGCCTAGGTACAC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TGTTCACAAGGCGCGC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TACCTGAGATTTTGGT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CTGTGGCCCGCTACAG	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GAGTTAAGAAGGTCGT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CCTTCTTTGATGTTTA	ref_6060_new	82	62	69	80	54	52	55	65	67	57
AACCGCTGTCTTTGTT	ref_6060_new	27	14	23	24	19	23	23	21	34	17
TGTGACCGGGCCATCT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TTTATGTACCGCAAAA	ref_6060_new	19	30	30	33	23	28	24	22	34	22
GACGTTCCCGTGGAAT	ref_6060_new	0	0	0	0	0	0	0	0	1	0
TGGCTTTAAAGGTCCT	alt_6060_new	0	0	0	0	0	0	0	0	0	0
CAGGCTTCAGTAATGT	ref_6060_new	119	80	123	108	85	87	73	84	72	104
GCTCGTTACCTTTCAG	ref_6060_new	34	35	29	29	29	25	44	25	27	33
TACTCTGATGCTACTT	ref_6060_new	4	4	8	3	4	4	4	5	1	4
CTACGGTGTGTAATTT	ref_6060_new	0	0	1	0	0	2	0	0	0	0
CGCACTAATCATTCAG	ref_6060_new	57	45	50	67	50	58	44	60	52	48
CAACTGTCTATGGTAT	ref_6060_new	29	26	53	35	26	30	36	24	30	27
TCTAGTGCGCCCCCTC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GCATATAGCCTGCCTT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TGTTCTTTTGACCCGC	ref_6060_new	38	25	25	14	15	28	16	28	14	19
GTGTCTAGCGATAGTT	ref_6060_new	71	83	87	70	78	77	72	69	61	75
AAGAAGTTCCCAGGTT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
CAATCTCAGGTTAAGT	ref_6060_new	0	0	0	0	0	0	0	0	0	0
TTGAGTCCTATATGTT	ref_6060_new	48	51	56	45	51	44	30	47	45	48
ACCTAAGTCTTCATAT	ref_6060_new	29	22	36	37	33	27	30	32	28	29
CTCTGTTGATTCTTTT	ref_6060_new	71	74	82	63	59	78	75	58	78	57
CCCCCATACTTTCTTT	alt_6060_new	122	127	152	138	118	119	130	138	121	132
GACGAAACACGGAATC	ref_6060_new	0	0	0	0	0	0	0	0	0	0
GCGGGGGGGTCCCTGG	ref_6060_new	18	6	23	22	10	10	18	16	9	22
TGGGTTTAAACGTTCC	ref_6060_new	21	25	30	29	22	28	44	11	38	21
TATGACGCACTCGATG	ref_6060_new	56	37	56	48	61	54	55	55	42	51
AAGTGCCAGGGCTGCT	ref_6060_new	21	16	21	26	19	25	24	27	17	13
AGTGTGTTCGTGCAAG	ref_6060_new	26	28	45	29	24	38	46	29	30	30
TGCAACGTATCGTTTA	ref_6060_new	98	108	127	116	100	93	108	82	90	83
CGGTATATTTGATAGA	ref_6060_new	79	83	113	100	87	102	87	102	87	96
GCAGCATAATGTCTGC	ref_3426_RC	160	32	166	166	29	111	25	128	43	138
ATTGGTGACGTATTCG	ref_3426_RC	597	117	784	616	135	575	128	527	126	521
GTCTATTATAATTTGC	ref_3426_RC	240	56	297	257	74	230	50	218	68	204
TGGCACGTTCTGTATA	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
TACGTGCAGGGGCGTG	ref_3426_RC	672	166	794	742	192	639	177	686	181	612
GCGGAGATGGTCTGCT	ref_3426_RC	92	20	79	86	18	99	19	97	26	92
TGATATATGCCGGTTG	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
AGACCTTTGATATTCG	ref_3426_RC	1247	277	1449	1284	294	1199	317	1161	311	1113
AGATATATGCCGGTTG	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
ATCTTTCTGATGGTTA	ref_3426_RC	182	48	252	249	48	217	47	181	64	168
CCAATAAGGGGTAAAG	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
TCGGACCCTAGCTGTT	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
TACAGGTCCTGAGGCC	ref_3426_RC	134	47	203	150	40	143	36	130	39	143
TCTTTGCCTCCCGTCA	ref_3426_RC	71	25	54	46	16	46	11	53	26	42
TTGCACTGGTTATGCG	ref_3426_RC	257	70	309	281	62	267	74	251	78	208
TGAAATTTTTATTCAC	alt_3426_RC	436	135	532	469	166	405	138	378	130	358
CAGGAACGGTCATCCC	ref_3426_RC	210	62	292	249	66	198	67	253	64	197
CTTTTTGTCACCTCAC	ref_3426_RC	230	47	281	201	55	219	73	169	54	183
ACTAGTGTTGGCCTTA	ref_3426_RC	76	15	123	93	24	68	23	87	19	72
TTGAGGTGAACGGCCC	ref_3426_RC	788	215	967	838	187	727	208	780	159	692
TTTTATGAGTTAGTTC	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
GCTACGTTCTGAGGCC	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
CGTACAATAGATACTG	ref_3426_RC	107	27	132	142	27	137	35	124	33	117
GGGCTTCCTAACAAGT	ref_3426_RC	208	48	302	233	65	205	46	203	58	199
TTTACTTAAATCTTAC	ref_3426_RC	28	12	42	35	14	30	10	30	6	23
ATGCCCAAACTCCCAT	ref_3426_RC	64	10	68	59	19	61	10	54	11	30
TTATGAAGTAAGCAAG	ref_3426_RC	311	75	414	354	96	318	69	311	99	294
CATTCAACTTCTGAGT	ref_3426_RC	91	19	117	141	28	88	27	102	29	97
GAGTACTCCTCTCGTA	ref_3426_RC	20	3	29	30	3	28	2	24	6	26
ATGATGACGTCTATCA	ref_3426_RC	211	64	218	235	71	170	42	195	39	203
TCTTTATACAAGGGGC	ref_3426_RC	6	1	8	7	1	7	2	9	5	8
TTGCTTATACGTCCCA	ref_3426_RC	442	115	520	453	126	418	116	444	105	433
GTTTAGTTTATTCTTC	ref_3426_RC	101	24	102	105	19	94	22	95	22	82
ATGTACGTTTATGGTA	ref_3426_RC	22	4	23	26	7	29	8	28	5	23
CTGCTTCATTAATCCT	ref_3426_RC	142	26	164	153	23	138	26	134	38	115
CGGTCACCCCTCATAC	ref_3426_RC	0	1	2	0	1	1	0	4	1	2
TGAGTTCTAGTGCCCA	ref_3426_RC	51	20	64	35	21	42	9	44	8	39
TAACGGCCGGATTCGG	ref_3426_RC	240	60	290	281	74	219	72	243	66	228
TCCGCAGTTTTGTTTT	ref_3426_RC	96	29	139	98	43	87	31	83	25	82
ATGGCGAAGGAGTATG	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
TGGACGCTTGAAGGTC	ref_3426_RC	105	14	118	123	30	114	23	93	41	92
GCTGACCTTATGAATA	ref_3426_RC	255	66	329	249	70	242	57	276	55	237
ACCGCAATGCTTCGTA	alt_3426_RC	773	301	935	855	304	809	363	749	362	665
TTGGTGTGACTTCTCA	ref_3426_RC	205	41	233	195	47	215	49	180	61	167
TTATTTTTCTTTTCTG	ref_3426_RC	179	49	245	213	32	186	28	185	49	159
GTTTTTGGCATGGTCC	ref_3426_RC	63	11	103	68	13	58	20	68	20	66
CATTGATCACCATTGG	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
ATCCCAATACGACATG	ref_3426_RC	6	11	14	9	10	8	14	11	6	12
TATTCTCTTCTGTTGA	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
TATCGCAACTGTTTCA	ref_3426_RC	2	2	16	8	0	6	2	2	1	7
TCACCATACATTGTCA	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
TCTGTGCGATTTCGCG	ref_3426_RC	38	13	56	38	13	29	11	34	11	39
TTTTCTCAGTTTAAAG	ref_3426_RC	260	65	318	286	81	236	62	257	50	217
GTGGGGGTTTAATAGG	ref_3426_RC	142	32	184	191	36	153	42	165	47	135
AATCTTCGCTTTTTCG	ref_3426_RC	228	44	279	235	55	207	51	202	69	210
TCCGCTATTCCTAGGC	ref_3426_RC	159	44	156	163	42	117	40	134	49	101
CACAATTCAGAGCTCT	ref_3426_RC	113	35	163	124	35	110	26	129	43	124
TCTTTTTACCTTACCG	ref_3426_RC	128	83	180	142	84	154	75	136	91	137
TATCTTTGCTGTACTC	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
CGCTTGCCCATTATAC	alt_3426_RC	168	44	227	203	52	188	62	219	50	178
TATTATCGTGTACTCA	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
TAAGTGGAACCAGGCA	ref_3426_RC	111	27	145	112	23	104	27	113	28	105
AAGGTTTGATCTCGAG	ref_3426_RC	0	0	0	0	0	0	0	0	0	0
CGCTACTTTGTGTCTC	ref_3426_RC	57	26	73	97	19	69	31	77	35	75
GTTCACCGTGGACATT	ref_3426_RC	13	2	17	19	4	17	2	13	3	16
GTAGAACAGATGGACT	ref_3426_RC	129	33	161	136	26	103	39	140	51	118
AAAAGTTGCTGAGCCC	ref_3426_RC	586	143	758	672	151	537	178	570	158	523
TGGCCTTCAGAGACGC	ref_3426_RC	41	7	45	43	9	42	12	19	10	34
GTGCCGTGCAGCCATA	ref_3426_RC	310	72	370	365	63	283	74	294	72	281
GATTGTCCGTGGCCGG	alt_3426_RC	24	6	27	30	17	19	17	30	11	23
CGACGATTAATTACAT	ref_3426_RC	477	121	655	534	120	506	125	513	141	462
TGTGCGGGAAGCGCGG	ref_5813_new	43	54	50	22	33	42	44	29	52	24
CCCTGTTTTTACACAG	ref_5813_new	14	21	18	11	19	6	15	11	21	12
AGAGATACACTTTGGT	ref_5813_new	35	34	36	48	44	30	54	26	47	26
GCCGTGTTTCTCAACC	ref_5813_new	34	46	34	39	52	31	59	27	50	37
GGTCCCGGTCTGTAGC	ref_5813_new	88	127	81	71	120	76	147	64	168	85
GCCTGGCTCCAACGAT	ref_5813_new	0	0	2	0	5	0	1	0	0	0
TGATCTTTCGCGTTTG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
ATACTTTTTCTTTTTG	ref_5813_new	27	22	49	31	28	18	21	27	42	24
ATGTGGTCGGCTATGC	ref_5813_new	1	0	0	0	0	0	1	0	0	0
TCGAATCGCCAAGGAC	ref_5813_new	2	5	4	1	3	3	4	0	0	1
GCGCAACAGAAAATAT	ref_5813_new	0	0	0	0	0	0	0	0	0	0
ACCTTCAGCCGCTTCT	ref_5813_new	6	2	4	2	8	4	6	3	8	0
GCGCATTGCAGCTTTA	ref_5813_new	30	37	27	32	51	35	43	28	32	31
TGCAGATTATCACAAC	ref_5813_new	0	0	0	0	0	0	0	0	0	0
CGAGATCGATAAACGG	ref_5813_new	32	54	29	36	54	38	56	27	53	20
GCCTGGCGGGGCCTGC	ref_5813_new	10	8	10	3	10	8	5	6	8	5
ATATATATTTTCGGTT	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TTGTAATTATCGCTCA	ref_5813_new	76	166	80	79	189	51	200	62	208	55
ATCGGTCTGGGGGGAA	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TCCTTGTTGTGGTGTA	ref_5813_new	0	0	0	0	0	0	0	0	0	0
CTCACACCGGCCTTCA	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TTCCCCATGTCAGGGT	ref_5813_new	0	0	0	0	0	0	0	0	0	0
ATCATCCCTCCGCGGA	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TTATTGTTATACACTA	ref_5813_new	23	33	33	26	37	26	30	31	39	34
TTCAGTCGGTTAATTC	ref_5813_new	62	128	85	75	133	58	112	75	159	65
AAATTAACTCCAGGGC	ref_5813_new	52	50	71	43	50	29	59	30	49	37
GTCTCATATCCGACGC	ref_5813_new	0	0	1	0	1	0	1	1	0	0
TTACGTGAGTATACCT	ref_5813_new	22	35	36	22	36	35	39	15	37	24
TTGCGTATTTAGTGAA	ref_5813_new	26	39	39	32	43	24	35	20	42	26
TTGTGTTTAAATGGTT	ref_5813_new	37	46	30	25	45	40	43	40	46	23
CTCCACGTCGGGGCAA	ref_5813_new	0	37	7	4	49	1	47	2	40	0
CGGTTTTAAGGTCTTC	ref_5813_new	77	146	116	92	140	87	161	110	157	91
TTTTTCCGTTTCGGCA	ref_5813_new	25	31	24	26	40	11	39	23	36	24
GCGCCTGCATAATTTC	ref_5813_new	16	27	27	14	27	17	19	16	25	15
AAGAATCTGTATCGCG	ref_5813_new	22	30	26	20	25	28	23	19	28	18
AAATTCTGGCTTACTT	ref_5813_new	14	36	30	31	37	20	31	30	38	13
TAGCTCCCTTTGGTGG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TTGTAGTGACGTCTTC	ref_5813_new	0	0	0	0	0	0	0	0	0	0
GCTTCATAATCGGGGT	ref_5813_new	22	29	37	23	36	22	37	24	50	16
GTTCGTGTCCATGGTT	ref_5813_new	44	58	82	42	60	56	37	31	67	34
CAAATATGCGTAGATC	ref_5813_new	0	0	0	0	0	0	0	0	3	1
CTGGATTAGACGGCCT	ref_5813_new	30	34	23	24	63	13	48	18	55	17
CCTTGTGGGATAATTG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
CTACAGGATTAGGTCT	ref_5813_new	30	25	29	21	23	21	30	20	27	17
CTACAGGTCCCAGTTA	ref_5813_new	82	80	81	75	106	81	107	67	103	76
CGGATCTGGCGATAAT	ref_5813_new	136	156	176	141	180	133	173	137	147	132
TCACGCTCCAGACCAT	ref_5813_new	5	8	9	10	10	5	7	7	10	4
GATACCGTGGCTGTAA	ref_5813_new	9	11	5	7	11	8	7	1	13	11
TTAGTCCGGATATCGC	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TGCACCTATCAATTAT	ref_5813_new	25	29	31	22	28	22	32	22	24	26
GTGTTCATTTATCCTA	ref_5813_new	0	0	0	0	0	0	0	0	0	0
GGAGATTGAGCTACTC	ref_5813_new	27	35	20	11	43	17	38	24	31	32
TTGAAGACCTACTGCC	ref_5813_new	5	2	15	12	6	9	9	3	13	5
ACCCGAGTTCCTCGGC	ref_5813_new	26	33	14	27	41	22	31	21	43	19
GTAAGATGCTCCACTC	ref_5813_new	17	12	22	27	24	12	22	12	16	16
CTTATCCGTGCTACCG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
GTTCTGTCTACTCGAC	ref_5813_new	194	274	236	182	273	157	241	173	284	149
ATGCTATACTGGACCG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
CTAAGTTCCGTGGATA	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TGATCACGGCGCCGGG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
GAGTGATTTACCTCAG	ref_5813_new	71	113	106	102	108	84	109	83	120	77
ACTAGTTTATTCAATT	ref_5813_new	14	16	20	14	23	10	16	12	37	11
GGGAACGAACTTCTCT	ref_5813_new	36	39	41	23	40	38	28	35	40	24
TCTCCTATGTCAGCAC	ref_5813_new	26	22	24	23	28	31	34	20	34	22
TGAGTTCACGTGCGAG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TCACAAAATGGTTACC	ref_5813_new	85	106	126	105	121	74	110	72	128	91
TCGTCTTAACCTATCG	ref_5813_new	28	31	19	26	45	18	43	34	37	22
GAACGGAATTTGGGCG	ref_5813_new	0	0	0	0	0	0	0	0	0	0
TACTTTCACCTTTATA	ref_5813_new	13	34	18	18	36	11	42	21	38	14
TACTTTTTCCATTGTA	ref_5813_new	7	17	15	8	15	14	12	15	15	8
CTAGTGGCGCGCATAC	alt_5813_new	22	21	12	8	20	8	21	8	19	11
CGTGTGCACCTGGTCC	ref_5813_new	63	120	82	77	123	71	132	67	97	68
ATGTTGTTATGCCGAG	ref_5813_new	49	61	57	53	68	32	56	47	77	47
CAGTCCGAACATATCC	ref_5813_new	0	0	0	0	0	0	0	0	0	0
GTCGCAGTTTACCCGG	alt_3943_fdr	46	47	53	56	60	28	57	46	45	41
CATCCGGTCCGCTGAA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGTGTGCAATGAG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGCTACACTCTGT	alt_3943_fdr	7	14	8	9	6	12	12	7	17	5
TTCGGTAGCTCTAGTG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTATATCTGCTAT	alt_3943_fdr	31	36	31	40	36	20	35	29	31	16
CTCCACTTTGGCTTGG	alt_3943_fdr	82	117	123	106	138	92	117	90	129	89
GCCTTCCTAGTATCCT	alt_3943_fdr	19	37	30	38	34	21	35	33	40	25
GTATAAACTGCACCAG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTCTATTTCTGCG	alt_3943_fdr	15	5	12	12	10	19	13	11	8	9
ATAGATTCAGACAAAC	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCATGTTTTCCAC	alt_3943_fdr	85	84	99	75	80	76	83	85	88	74
AGGGCGAGCTCTCTTG	alt_3943_fdr	147	165	143	117	179	132	140	99	142	109
TCTTCACCCAGTTCTA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
CTAACGTGGTAGCCAA	alt_3943_fdr	41	68	96	75	75	70	73	72	81	51
TATTCGCAATGAATGA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGTTATTTTCAAT	alt_3943_fdr	40	36	55	27	39	27	44	31	49	28
TGACTGTTCCGCTTCG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCTGCATTCTGTT	alt_3943_fdr	5	8	6	4	7	7	8	3	10	8
ATCCGTACTTCACTTA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GATCGTTCCTGAGGGA	alt_3943_fdr	98	115	92	90	92	78	78	84	108	77
TTTCGTAGGCAACCTT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAGCCTTAGGCAC	alt_3943_fdr	20	38	18	25	33	18	22	21	28	23
TGTTAATATATTTCTA	alt_3943_fdr	68	71	90	67	84	82	97	57	80	61
TGGCTCTAGGACCACC	alt_3943_fdr	92	86	79	80	97	63	70	55	82	57
GGGGCCATCAGCAGCG	alt_3943_fdr	78	112	123	99	127	96	112	124	125	91
ATTTCGTTGTTTAACG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTCTCAGGTTATA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCTCTTTCTTGTG	alt_3943_fdr	30	56	67	43	56	33	72	51	68	46
TTTTCTATATTTAGTA	alt_3943_fdr	7	1	6	5	4	8	4	8	9	3
GAGTCATACGTGCAAT	alt_3943_fdr	5	2	3	3	5	3	2	0	5	7
GCCACAACTTCGCATT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGGCCCTGTATT	alt_3943_fdr	80	94	90	65	100	68	88	68	100	81
GCACGAGGAATCTTGG	alt_3943_fdr	138	152	155	129	158	118	160	144	172	105
AGCCATATGCACCGTT	alt_3943_fdr	32	57	43	49	72	46	74	37	60	18
ATAATCAGTCATAGTA	alt_3943_fdr	4	2	5	7	13	2	5	9	5	7
CTGTCACTCTTAAAAT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTAAAATGTAATG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GGGAATATTCGACAAT	alt_3943_fdr	63	94	84	67	106	64	78	51	102	56
TGTCTTAGTCTCGTGT	alt_3943_fdr	11	13	22	16	15	12	16	15	18	6
ATACGTCTCTGCTCGT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TATCTGGACATGCAAG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTATACACGTGAT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
AATATCGCTCGACGTC	alt_3943_fdr	11	7	10	6	12	6	4	5	10	5
GACGTTGTCCATATCA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TGACAGGAGTCTAGCG	alt_3943_fdr	24	25	23	19	32	20	22	17	19	18
AGCACTGTCGCACTGG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TACTGCCTGCACATCC	alt_3943_fdr	15	13	21	10	16	16	18	10	15	12
TTATCTCCATATCTTC	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTCACAAAATTGGCGT	alt_3943_fdr	9	11	13	11	11	15	14	20	17	13
GCACGGGACGGCACAT	alt_3943_fdr	7	17	15	18	11	18	15	14	10	12
TGATTCTTGCGATCCC	alt_3943_fdr	67	76	83	70	72	80	62	75	73	71
GCTACATCCCTGTATC	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
AAAATCTTATCAGGGC	alt_3943_fdr	30	60	33	35	44	33	37	42	44	28
ATCGTACTATTTTTGA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGCCGACCCAACC	alt_3943_fdr	53	93	90	83	116	74	89	69	96	75
TCCCGGCACCCAGGGT	alt_3943_fdr	33	40	38	37	49	25	41	29	38	32
AGGGACCCCACCCCTG	alt_3943_fdr	17	5	13	7	11	8	5	9	13	10
TGCCCAGCCATTAGCG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
ATCACGGACTCACGTG	alt_3943_fdr	135	122	145	132	137	117	152	130	142	132
CTCCCATATCCTGCTG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GTAAATGCGGCTCCGT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCGGACTCAATCC	alt_3943_fdr	18	13	16	18	28	11	26	8	29	9
CGTCTGGGAATGGGGG	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCGACAAACCGGG	alt_3943_fdr	61	56	59	41	72	54	41	52	52	50
TTGTTGGACATGCTAC	alt_3943_fdr	40	51	36	43	43	40	55	37	70	33
CCGCTTCTGCGATGGT	alt_3943_fdr	25	33	30	34	42	31	29	14	39	21
CCTGAGTTGCCTATCA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGATACAAACTAT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
CCGGACTAATCGGGAA	alt_3943_fdr	19	17	18	25	35	19	28	27	43	25
CACACCTGGTGATAAC	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCCCCCGTTGCGT	alt_3943_fdr	5	13	8	9	11	16	7	9	18	9
ATAAAATGGCAGATCA	alt_3943_fdr	41	53	77	33	41	42	41	29	53	40
CTGGCATTCTTACATT	alt_3943_fdr	26	21	20	29	24	29	31	26	26	18
GTAGTCTGCAGCGCTG	alt_3943_fdr	20	29	26	24	34	20	24	27	30	34
CATGCTGTCGATGCAA	alt_3943_fdr	9	3	10	6	8	5	9	5	10	8
CCTGATCTGCGTTAGC	alt_3943_fdr	67	82	77	63	108	60	84	41	84	50
GCCACAGGCTTTTATA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
CATCTGGTGGCCGTAA	alt_3943_fdr	77	71	83	78	73	69	84	82	66	61
GTGACGGGGTCGAGAG	alt_3943_fdr	64	67	64	65	69	64	71	39	52	46
GTTCTTGTTCAGGTTG	alt_3943_fdr	25	32	31	33	29	29	33	28	37	33
GGCTAGCCCCCAGCCA	alt_3943_fdr	31	16	18	32	28	20	28	22	30	17
TCTATTAATCATGTAT	alt_3943_fdr	19	32	26	27	34	14	35	28	38	31
TCGTCCGTCTACCAAT	alt_3943_fdr	19	31	31	23	41	28	34	28	33	10
GGTCCTCTGCAGTGCA	alt_3943_fdr	47	57	52	50	55	37	61	39	51	44
CGCGTTTTTCATTGGG	alt_3943_fdr	77	94	125	96	108	90	108	90	113	77
CGGAATCCGGGCTTCG	alt_3943_fdr	20	28	19	28	26	28	32	18	25	15
ATTTCTTTGGGATCGG	alt_3943_fdr	17	20	25	30	28	20	26	28	25	16
AGCCGGCAAACCTTTC	alt_3943_fdr	9	7	9	3	6	5	4	6	13	5
GTGGTATCGGTTTCGA	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAGTTGGAGGCGT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
TAGCCCACTTATCGGT	alt_3943_fdr	24	27	24	22	21	17	33	18	21	22
GCCGGAATCCATACGT	alt_3943_fdr	0	0	0	0	0	0	0	0	0	0
GTACGTACACCTTTCC	alt_3943_fdr	0	14	3	1	10	0	7	1	9	0
GGCCTGCTAGGTTAAG	alt_2515_fdr	104	116	121	115	114	84	136	77	110	92
TTGCTGTCATATTCAC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTCAAATGGGTAC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGTTGAGTTTGTC	alt_2515_fdr	97	108	101	77	129	80	131	84	134	60
GCCTCACAAATTAATT	alt_2515_fdr	2	3	3	4	9	4	5	6	1	4
CGTTAGTTTCCTCGGG	alt_2515_fdr	36	53	43	43	47	41	54	40	52	44
AAATTATGACCGTGAG	alt_2515_fdr	43	57	41	47	38	25	58	37	55	32
GAATTTCAAGGGGATT	alt_2515_fdr	4	8	7	2	9	10	11	4	13	4
GCCAGAAACGGCCATG	alt_2515_fdr	22	44	37	47	44	39	52	29	40	19
TGGGGTTTAAACGATA	alt_2515_fdr	76	74	88	75	74	56	100	47	77	57
AATGTAGTGGCAGTGT	alt_2515_fdr	28	38	18	27	41	22	39	20	38	15
GTCCTCTTACTAGCTG	alt_2515_fdr	137	178	167	127	205	162	204	125	197	141
GGCCTTGTTCCTCTCG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGACTCACTTCGG	alt_2515_fdr	20	19	15	20	16	18	18	12	22	18
AAGCTTCTGCCAATAT	alt_2515_fdr	7	2	3	6	4	9	3	4	5	8
TGTGCGCAAATGAATG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GCACGATCAGATTCAG	alt_2515_fdr	50	78	55	46	49	43	57	36	63	50
CCCAGTTTATCCCAAG	alt_2515_fdr	20	30	28	18	26	21	32	21	34	15
GTATTTATATCTCGCA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGATTCGCCCTGG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AAAGGGTGGGTTAATC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTAGAAGATCAA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTTGCTATTGAGT	alt_2515_fdr	9	23	20	12	24	16	28	12	31	11
ACATATTGTCGCGCAT	alt_2515_fdr	0	3	0	0	0	0	0	0	0	0
GTGATTGTGGTACGAA	alt_2515_fdr	69	114	73	63	124	80	146	68	165	62
CCTTTAAACAGTTCCT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
ACTATCACATTTATGC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GACCTAATCAATTGTT	alt_2515_fdr	53	38	47	35	63	38	64	35	71	34
TGTGGGTACTCACTAA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CAATAGCAGTTTGAAT	alt_2515_fdr	19	25	17	12	27	19	16	18	33	19
GCTTTGCGGTCTAACA	alt_2515_fdr	37	40	53	34	34	37	36	33	46	17
TTCTCGTCTTTCTAAG	alt_2515_fdr	4	10	9	5	11	4	9	6	6	5
CCGGGAACTCTTGGGC	alt_2515_fdr	16	28	24	12	18	14	13	12	17	13
ACGGAAACACAGTGAT	alt_2515_fdr	1	4	5	4	3	3	5	0	2	2
TGAAGCGCTGCTAAAC	alt_2515_fdr	41	36	58	24	31	44	48	37	51	28
TGCATCGGACAGATCG	alt_2515_fdr	56	76	74	73	100	68	98	56	108	46
CCTTTCGCAATAGTAT	alt_2515_fdr	3	3	6	3	2	2	7	1	6	1
TCTCCACAAGGCCCGC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GGACCTTATGATGGGG	alt_2515_fdr	7	9	9	9	10	7	10	9	19	6
CGCTCCTATTGATGCG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
TGCACTATGCAGTCTT	alt_2515_fdr	0	3	3	9	4	3	3	0	7	4
CGTATGCGTTTGAGTG	alt_2515_fdr	22	35	21	20	37	32	44	13	51	16
CCTCGCAAGTTCTAAA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GTATAAGATCTATATC	alt_2515_fdr	7	9	8	11	4	9	13	3	11	6
CCCAACTCGGACACCG	alt_2515_fdr	13	26	18	30	44	9	28	26	35	16
CTGTTACACATGGTCA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CATATACGGTCCGATA	alt_2515_fdr	22	29	23	13	26	12	27	15	37	15
CGTTAATGATCTGTAT	alt_2515_fdr	49	63	61	42	72	61	56	41	67	41
CATGGCGTGCAAAGAT	alt_2515_fdr	80	85	96	93	115	67	78	76	94	77
TCTTCTAGACATTGCA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGCCTTCCAAGC	alt_2515_fdr	227	273	183	211	291	182	302	159	309	183
TCGAGCACACAACATA	alt_2515_fdr	55	83	50	68	94	51	74	48	79	48
TCATTTGACGCACGCT	alt_2515_fdr	50	50	54	39	58	38	50	38	48	32
ATCTTAAGGTCGTCTT	alt_2515_fdr	137	185	183	135	204	133	194	136	194	135
TGCTTTATTCGAGGGT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTGCACATGGCAT	alt_2515_fdr	35	68	51	37	52	35	61	25	61	45
GCTCCTTTAGTTCACG	alt_2515_fdr	8	6	2	5	3	3	4	8	4	1
GTCCCGATCTCACGAC	alt_2515_fdr	15	35	21	24	22	15	39	22	40	16
CTTAGGTGAATGGCGA	alt_2515_fdr	44	66	52	56	69	43	60	44	74	54
GTGAAATGACCTGTCT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GAACCGACCGCGGATC	alt_2515_fdr	7	5	8	5	11	9	8	1	7	5
CCGTAGCATTATTAAC	alt_2515_fdr	5	7	13	16	11	7	12	11	8	8
TCCATGAAACTAAACA	alt_2515_fdr	7	10	8	9	17	6	7	6	11	5
TTGTTTCCGAATTCAA	alt_2515_fdr	15	21	15	8	18	6	15	7	23	16
GATCACGTCCCAGGAA	alt_2515_fdr	22	28	39	23	31	23	46	19	35	18
AGTAATCTTATCCTAA	alt_2515_fdr	84	103	118	100	106	85	110	55	112	77
TTTTGCGGCGTTCGGC	alt_2515_fdr	27	41	21	23	30	29	33	28	33	21
TTTAGATCTGTGCTGC	alt_2515_fdr	3	2	6	5	9	4	12	4	6	6
CCTCGTAGTTAGTCCA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GGGAATGGGGCGCTAA	alt_2515_fdr	13	11	21	15	25	22	27	18	27	12
GGACCATTTCAAGGAG	alt_2515_fdr	24	21	19	24	42	19	43	24	22	17
AGTCCATCTCAGCATC	ref_2515_fdr	121	144	169	158	129	134	149	141	142	142
TGCGTGAAGGTATTTC	ref_2515_fdr	15	16	23	22	23	15	21	16	24	23
TGTAAATCGAGTAGCT	alt_2515_fdr	101	149	164	112	161	98	139	104	182	78
TATCCTGGCTACAGCA	alt_2515_fdr	21	32	27	33	36	30	37	32	26	25
AACGCAACTTGATGTT	alt_2515_fdr	47	57	44	37	58	46	65	43	59	43
CTTAGTAAGAATTTTT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CACGCCGTACCTACAT	alt_2515_fdr	7	10	7	3	14	9	10	5	11	4
GTTCACTCATGTCCAT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CCGGAGTCTTGATAAT	ref_2515_fdr	33	20	33	17	29	36	17	21	35	26
TGCGTGGTGTGATCCC	alt_2515_fdr	15	24	27	15	28	19	32	12	27	16
GGATGGTAGGATAAGG	alt_2515_fdr	10	8	13	8	6	8	12	6	9	6
TAAGATCAGCGTAATA	alt_2515_fdr	24	36	45	30	51	21	27	24	33	32
GGTTTCTACGCACCGC	alt_2515_fdr	107	139	127	97	148	97	118	83	149	69
AGGGCCATTCCCCAAG	alt_2515_fdr	31	39	34	32	43	30	53	24	43	27
CAGATAACTTAACAGA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AATTTGTTCAACAGAG	alt_2515_fdr	26	46	22	26	50	19	54	27	55	28
CTAGACTCTGGAGGCT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CATACTCATGTTTTTA	alt_2515_fdr	15	23	11	11	28	9	20	10	20	12
CATAACTTCAAAGTCG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AGTATTAATTGATAAT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTGACTCAGGTCA	alt_2515_fdr	9	4	10	6	11	7	9	0	12	8
ATTTCGATCCTAGCAT	alt_2515_fdr	38	61	56	36	59	22	65	43	52	37
TGTGCAGCATTGGCAT	ref_2515_fdr	93	79	98	83	104	74	101	69	96	76
CGATTGGTTGTTTGGC	alt_2515_fdr	50	68	52	55	93	54	81	43	98	57
ATTATTAAATTTGTCT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GCAACTGTCACGACCT	alt_2515_fdr	5	5	6	3	14	4	6	5	9	9
TGTTTATCATGTTTTT	alt_2515_fdr	81	85	113	72	104	76	101	92	104	78
GAGCCCTCGTATCCTA	alt_2515_fdr	14	16	14	9	28	23	22	15	21	12
TGCTTCTGGAAAGGTG	alt_2515_fdr	43	61	41	34	61	49	54	38	56	41
TACCGCTTACACAACT	alt_2515_fdr	5	10	8	8	9	9	5	10	11	4
TCCTGACGCTGCACGC	alt_2515_fdr	29	39	29	9	32	18	38	30	28	20
TCACCTTGACATCCCG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
TCATCGCTCAGTGTGG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATTATCCCAGCG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTAATCTCTTTA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCTGTGCATAGG	alt_2515_fdr	26	42	46	40	43	41	37	36	51	36
CGACAGCATTCTCCTG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTCAATAAGGGA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CAGATAGAACGGCCTA	ref_2515_fdr	101	73	99	104	92	87	88	89	100	95
TGTTCAATAAATACTG	alt_2515_fdr	23	40	43	26	29	29	39	21	36	31
CTTATAACCCGCGAGG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
ACCACCGCACAGACAA	alt_2515_fdr	74	178	104	77	155	83	182	68	180	73
ATAGATCTTTATCTTG	alt_2515_fdr	89	93	71	73	81	65	95	71	90	71
CATTCGCTCACATTTA	alt_2515_fdr	6	14	7	7	7	13	13	3	12	7
TACGGGCCATTCGAGC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AAGGAATTGCTTTATT	alt_2515_fdr	1	12	4	3	10	2	6	4	2	1
CTGTTCCAAACCATAA	alt_2515_fdr	22	50	27	19	36	23	39	22	42	24
CAGCCATATCCAATTC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGTGTGTCAGTTC	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCCTCCTGATCTT	alt_2515_fdr	53	54	66	61	59	77	85	52	80	37
GTCCTGTATAAGTTCT	alt_2515_fdr	3	6	3	2	6	5	0	0	1	2
ACACCGTCTTCAATGC	alt_2515_fdr	32	57	41	38	49	33	65	31	57	25
CTTCTGTTTCACTCCT	alt_2515_fdr	30	32	28	16	44	15	30	24	27	7
GCTTCGGTGTGTACGA	alt_2515_fdr	5	7	7	10	10	8	6	8	5	6
GTTAACGTCTACTTGA	alt_2515_fdr	2	11	6	5	11	6	6	4	6	4
ATTCGCTTGGTTAGTA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CGACGCTACCCAATCG	alt_2515_fdr	23	35	41	21	32	29	42	19	56	16
GTCCGCGTCGAATTCA	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
CGGAATTCTGTCTTTT	alt_2515_fdr	7	15	9	2	8	3	9	7	13	2
TCCATGTGGTCCCTTG	alt_2515_fdr	53	65	60	54	76	51	76	51	97	49
ATATACCCACGTATAG	alt_2515_fdr	26	31	21	24	46	24	25	18	40	21
CACCTGGAGACGTCGT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGCTACTAGGGT	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
AACTCGAATTCAATTT	alt_2515_fdr	6	13	17	19	12	11	13	11	11	13
TTATTTAGTTACGTGG	alt_2515_fdr	8	21	18	11	15	12	29	8	26	16
ATACGTGTTACGTGAG	alt_2515_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGAGCTCTCCAAT	alt_2515_fdr	0	2	2	0	0	0	1	1	4	2
TGTATTTGGGTTATGC	alt_1198_RC	90	86	105	84	66	71	84	68	72	66
AAGTCTTCCGACATAA	alt_1198_RC	683	517	846	653	474	636	521	618	503	645
GATTTCTAAACGGCTC	alt_1198_RC	76	84	89	58	49	72	40	57	52	78
TTGCTCCTGTTCACCG	alt_1198_RC	27	31	35	43	27	29	33	28	33	32
TCAGTTTCCAATGCTG	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
GTACTTCCCGAAGCAG	alt_1198_RC	20	18	16	11	26	14	20	16	28	17
AATCGGGACCCGGAAT	alt_1198_RC	24	18	21	15	8	10	11	11	4	20
TTATGATTAATGTTGG	alt_1198_RC	110	88	138	141	91	128	99	116	90	115
AGCGAGTGATCTTATC	alt_1198_RC	87	62	84	79	70	79	65	85	68	76
TATTCTTTACTTAGGG	alt_1198_RC	64	45	74	57	47	46	44	63	56	61
CGCTGTTTGAACCCAA	alt_1198_RC	41	48	46	45	41	41	61	31	52	33
AGTCTGTCCAGCGCTT	alt_1198_RC	24	17	24	20	19	23	16	22	15	20
GGCCGCATGAACAAAT	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
CGGCGAAAGCAGGTTG	alt_1198_RC	187	149	181	160	137	161	128	177	167	172
TTCACGTTGCGCTTCG	alt_1198_RC	66	88	92	90	62	94	72	100	83	74
CGGTACAAGCGGCCGA	alt_1198_RC	24	14	36	29	21	16	17	17	9	30
GTCAGCGGTAGGTTGC	alt_1198_RC	44	37	45	41	37	42	40	40	53	36
GATCGCGTGGCATTCA	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
ATCGAGAGCAGTTTCA	alt_1198_RC	44	24	42	28	30	33	35	34	30	38
TCCGGTCTGGCCTACT	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
AAACTTATAGCCTTCT	alt_1198_RC	100	93	125	70	70	103	81	95	78	94
TTACACCACCTTGTTG	alt_1198_RC	11	2	12	8	14	14	9	13	11	9
AAGACTTCCGACATAA	alt_1198_RC	0	0	0	0	0	0	0	0	0	1
ATTATAGATGTGGAAC	alt_1198_RC	8	4	6	10	6	16	14	16	10	17
TCGGTGCCCCTCGGTA	alt_1198_RC	165	120	187	131	138	168	126	137	143	131
GACGCATTGAGTTATT	alt_1198_RC	50	32	55	54	39	52	36	53	35	47
CATTTTCGATGCTTAG	alt_1198_RC	10	8	17	11	14	12	9	15	13	17
AGTAATAGCATAGATA	alt_1198_RC	14	17	38	16	14	13	22	23	19	22
CGGTGCTGTGATTTGC	alt_1198_RC	13	25	16	10	22	8	34	6	25	12
TCGCTATCAAAGTTCC	alt_1198_RC	194	189	218	195	190	151	203	180	198	190
AAATAGGATACTCGCG	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
ATCCTTTTGTGAGCTT	alt_1198_RC	15	10	9	21	23	26	10	15	20	22
GGATGATAATCAGCTT	alt_1198_RC	48	49	71	45	41	42	55	53	34	48
CTTGGATCGGTCGGGT	alt_1198_RC	96	65	93	100	61	99	76	105	91	85
TGTCCTATCGCGCAGC	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
GTATACATTCCTGGCT	alt_1198_RC	76	53	76	64	54	74	52	61	53	75
TCTTTGCAAATTTTCA	alt_1198_RC	0	0	0	0	0	0	0	0	0	0
CACATCGAGTCTCTTG	alt_1198_RC	29	22	36	28	21	26	30	24	23	24
AAGCTCGGAACACTTT	alt_5649_new	12	35	13	12	21	18	37	17	27	25
GCGCTCGTATTTATTT	alt_5649_new	0	0	0	0	0	0	0	0	0	0
TCTCGCGGCTGGATTA	ref_5649_new	16	11	11	23	23	5	14	12	25	14
CGATCGTACGGCAAGT	alt_5649_new	47	65	70	55	52	54	70	34	71	40
CTGGTTCGTTCATTTT	alt_5649_new	8	7	11	6	15	7	9	8	5	5
AATATTTGTTCGGCCC	alt_5649_new	0	0	0	0	0	0	0	0	0	0
TTCCCGATTGTCATCC	alt_5649_new	4	33	13	9	31	6	23	9	32	2
ATATCATTGCCTGTCT	alt_5649_new	39	59	43	36	48	36	66	42	73	25
GACCTTCTAGTTGTCT	alt_5649_new	19	30	33	21	55	27	45	26	36	16
CGAGGGCATTAAATCG	alt_5649_new	38	62	57	36	71	53	53	36	68	30
CACGCTAAAGGGACTA	alt_5649_new	8	24	21	20	22	8	25	13	38	13
GTTCTCGTATGCACAT	alt_5649_new	3	10	6	3	9	9	6	6	6	3
AAAGTGCGGCGTACGT	alt_5649_new	4	9	5	7	12	2	3	6	7	3
CACCCGTTTTACTATC	alt_5649_new	0	0	0	0	0	0	0	0	0	0
ATACTCTCGTCCACTT	alt_5649_new	36	79	35	44	52	35	60	40	49	47
GCATGTGCCACTCCTG	alt_5649_new	24	39	35	28	44	21	48	26	46	26
ATCGCGGACGGATGCA	alt_5649_new	17	27	28	23	26	17	23	15	31	14
GGCGACGCTAACCACT	alt_5649_new	70	86	89	68	87	58	81	66	67	55
GTCTTACATCGTCTGG	alt_5649_new	4	3	5	6	8	5	11	5	5	4
AGCAGGTAGTTGTGGC	alt_5649_new	20	34	28	26	27	14	45	15	16	10
CATCCGATTGTACCCA	alt_5649_new	3	4	6	2	7	0	7	1	2	7
GTCCTCAGACACCACA	alt_5649_new	0	0	0	0	0	0	0	0	0	0
TTTATGTACGATTAAG	alt_5649_new	13	11	14	12	13	12	18	11	18	8
GCATTGTCTAGGCCGC	alt_5649_new	0	0	0	0	0	0	0	0	0	0
CGCCTATGCGGATATT	alt_5649_new	138	191	173	127	183	155	216	132	209	131
CTACCGTGCATGTGTA	alt_5649_new	0	0	0	0	0	0	0	0	0	0
TGCTAACTTAAACCGT	alt_5649_new	0	0	0	0	0	0	0	0	0	0
TACACAAGGAGGTTAT	alt_5649_new	0	0	0	0	0	0	0	0	0	0
TCTATCCTATAGCCGA	alt_5649_new	0	0	0	0	0	0	0	0	0	0
ACTTCGGCAGCGTGTC	alt_5649_new	69	100	97	66	104	71	99	79	93	71
CGGGAACTGCGGCGAC	alt_5649_new	8	10	3	12	8	1	7	3	7	3
CTGCTGCTTGTCGTAC	alt_5649_new	71	107	74	73	124	70	90	75	100	47
AGCTTTCTTGTCAACT	alt_5649_new	37	36	47	36	53	37	49	35	68	26
AACACTTTTGGAGGTT	alt_5649_new	0	0	0	0	0	0	0	0	0	0
CGCCCGCGATCGACCA	alt_5649_new	57	72	72	54	63	45	83	48	61	39
TTTCCAGCCGCCAGCT	alt_5649_new	30	42	48	34	38	48	53	37	40	27
GATGGTTTAGGATTCG	alt_5649_new	8	20	19	10	26	14	20	12	17	14
TCTCCCTGTAGTATCG	alt_5649_new	0	0	0	0	0	0	0	0	0	0
CGTCCTTTGCGTCGGT	alt_5649_new	0	0	0	0	0	0	0	0	0	0
CTAGTAAGTAGGTACT	alt_5649_new	1	3	3	0	4	1	2	8	4	1
AGTTATATATGCTGCC	alt_5649_new	6	6	8	8	9	13	4	2	11	7
TACCAACCTTTGGCTG	alt_5649_new	0	0	0	0	0	0	0	0	0	0
CCATTCAATAATCTGT	alt_5649_new	0	0	0	0	0	0	0	0	0	0
TATATGCGAACCGTGG	alt_5649_new	4	13	13	9	16	6	19	10	17	6
CCTCGTGTACGTGGCG	alt_5649_new	5	9	4	6	11	4	19	4	11	6
GGTAACGGCTCAAGCA	alt_5419_fdr	99	119	120	108	103	119	100	102	114	88
CTCGTAAACTCGTTCG	alt_5419_fdr	21	18	25	22	21	28	29	11	27	20
TTCAAGTAAACTGCTC	alt_5419_fdr	15	2	8	4	3	6	3	5	11	6
TACCCAACGATGTGGT	alt_5419_fdr	54	56	70	47	41	55	49	51	46	55
TACCATCAATCTGTAA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TGTGAAATTATGGATG	alt_5419_fdr	91	87	98	87	81	71	80	63	90	70
TGTCGATCAGCTGAAT	alt_5419_fdr	106	76	161	109	105	114	103	89	107	93
GGGTGCTCAATCGCTT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
AACACGGTCAGCTATC	alt_5419_fdr	80	73	122	71	90	85	77	85	86	77
CGTTTCCTGGCTGTTT	alt_5419_fdr	12	8	9	11	10	17	13	6	18	11
CGTAGGATTATGTAGC	alt_5419_fdr	21	31	33	31	23	23	34	18	33	17
CGTTTAGCACCCATGT	alt_5419_fdr	25	23	31	25	27	37	28	31	32	19
AGGCGGTCCCCGCCCT	alt_5419_fdr	28	32	26	19	27	13	17	17	30	21
TTTAAAGTTGGTCCCA	alt_5419_fdr	37	35	55	39	46	27	33	25	36	32
ATCGCTTTGCAGCGCC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
AGAATCTGTTATGCGT	alt_5419_fdr	13	6	5	6	6	8	8	11	3	3
TCGGGCGGACCCGGCC	alt_5419_fdr	97	97	138	111	88	83	107	90	96	93
GCCTCAGGTGAGACGA	alt_5419_fdr	20	15	34	19	25	24	13	21	19	20
CTCGGTTATGTTTATG	alt_5419_fdr	1	0	2	1	0	0	0	3	0	0
TTTAGTTTCTAAACAA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTCAATCGTCGGG	alt_5419_fdr	6	8	2	8	11	8	9	5	10	2
CTCTTCACGCTGTTCA	alt_5419_fdr	21	20	42	41	34	24	29	19	36	18
GGTTAGGCTAATTCGT	alt_5419_fdr	62	82	98	81	61	85	56	62	75	62
TTTGCTATCTTGATAT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCCATCCACACCCATA	alt_5419_fdr	53	55	86	68	49	72	74	67	63	72
TTAGATTCTCACGCCT	alt_5419_fdr	78	75	86	103	83	75	102	92	86	86
GGCACTCTAATAGATA	alt_5419_fdr	9	15	24	17	6	13	22	10	16	7
GTCCATTCAATGGTTT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCCGAACGGATGGGGA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CGATACTTTCTAATGG	alt_5419_fdr	3	1	2	3	4	4	0	0	1	2
ATCTCATTGGGCGGAT	alt_5419_fdr	9	12	26	19	19	16	21	11	15	15
GTACGGTGACTACTCT	alt_5419_fdr	55	54	61	70	46	59	66	50	59	42
CCAGTTATAGATAACA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGCAGTCCTTGAA	alt_5419_fdr	11	9	13	12	3	8	10	8	8	6
TTTTTGTCATACGCAT	alt_5419_fdr	80	80	101	93	67	89	81	109	83	89
ATGCTTGCGCTCAGAG	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCTTGTCAGAGTC	alt_5419_fdr	201	192	253	196	193	195	198	180	220	173
AGGGAGTCCTATATGT	alt_5419_fdr	4	4	3	1	7	1	0	3	0	4
CAATTTTATTAACCTA	alt_5419_fdr	3	6	4	5	4	5	3	4	5	4
TGCTCCACGCCAAAAA	alt_5419_fdr	21	16	25	18	21	18	13	18	17	10
ACCAAGCGCTCCGAGC	alt_5419_fdr	7	5	2	3	6	2	5	8	3	2
GTTAAATAATTCTGCC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTGTGAGCAGTTG	alt_5419_fdr	26	38	31	30	35	33	30	20	36	29
CGGCTTGTTCGGGTAA	alt_5419_fdr	7	1	9	3	6	3	6	5	6	4
CGTGCTTTATCGGCGA	alt_5419_fdr	32	39	43	43	45	28	37	42	31	29
TATCTACGTATTCTGG	alt_5419_fdr	23	25	23	22	27	18	13	19	21	20
ATTACTTACTCTTTGG	alt_5419_fdr	61	82	65	54	94	63	93	66	95	63
ATAGTGCTCAAATGGT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCCATCAGTGACTTCG	alt_5419_fdr	17	22	21	25	15	12	12	16	19	9
TCAATCAGGCATGCTA	alt_5419_fdr	6	4	5	1	1	7	8	3	4	4
TATCCAAAATAGATAT	alt_5419_fdr	57	78	78	73	74	84	68	48	87	58
TACTGATATAGAAACC	alt_5419_fdr	11	3	11	12	4	7	9	4	14	6
ATTAGATGTAGGCTAA	alt_5419_fdr	12	11	16	19	15	12	17	7	13	16
TTTCCGTAATTTCGGT	alt_5419_fdr	0	1	1	1	1	2	2	0	0	2
CCCGTAAGGAGAGTTT	alt_5419_fdr	28	32	17	25	34	15	40	22	48	16
CTTTTTGAGGCTTTGA	alt_5419_fdr	12	5	10	8	11	6	6	8	6	4
TGTTCGCCTTTCCTTA	alt_5419_fdr	23	23	22	30	26	23	19	23	16	14
CCCTTCTTCACCTCCC	alt_5419_fdr	33	66	43	52	67	34	72	46	82	40
TTGTACTGTATTTCTA	alt_5419_fdr	12	13	7	12	13	16	4	9	7	15
CGGAAGATCTTTCCGG	alt_5419_fdr	14	10	17	8	6	10	15	9	17	9
GTAGATTGTTTGGTGA	alt_5419_fdr	35	41	67	56	55	46	56	37	51	38
GTGCGAGCACCAACCT	alt_5419_fdr	29	44	59	43	44	52	46	41	56	36
TCCCTCGCCACTGGGC	alt_5419_fdr	6	15	14	10	17	13	23	16	22	6
GTTCAGCTAGCCAAGT	alt_5419_fdr	169	157	214	164	167	158	162	179	166	167
CGATAGCGGGGTTTAC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTCCATCCGATGG	alt_5419_fdr	111	96	110	117	123	99	128	97	131	95
TGCAGCCATCCGAATA	alt_5419_fdr	20	42	31	29	17	12	44	17	26	18
GGTTTATCGCGTATGA	alt_5419_fdr	18	12	14	13	9	13	19	25	14	13
TATGTTTCGCAGCATC	alt_5419_fdr	13	14	21	16	18	18	22	15	15	11
TTTGTGCAATACAATG	alt_5419_fdr	39	41	43	40	46	51	51	36	58	44
CTCAATGGCTTTGCAT	alt_5419_fdr	35	49	39	41	33	26	31	48	38	35
ATCTGGGACCACGCGC	alt_5419_fdr	189	183	209	223	224	167	194	152	216	174
CTCTTAATTGACCAAC	alt_5419_fdr	31	26	35	24	51	24	37	26	33	28
GCGGCCGCCTAAAGAA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
ATTACACATAAGTTGT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGTGCCCGATTGA	alt_5419_fdr	26	28	25	29	19	16	27	35	33	21
TCAGTACGTGTAAGTT	alt_5419_fdr	79	80	91	101	101	66	86	66	68	70
ACCCTTCTTCCTCATG	alt_5419_fdr	27	29	31	26	19	26	23	21	24	18
GCGGGGAGGGCAAGTC	alt_5419_fdr	16	7	10	8	8	9	13	8	15	18
TCAGTTTCACGGTTCG	alt_5419_fdr	16	27	36	28	28	20	22	23	38	19
GCTTTAAAATCCTATC	alt_5419_fdr	18	21	23	12	21	18	25	28	19	20
TGCCCTATGGTTATCT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCCCCCGGGCGC	alt_5419_fdr	12	9	11	16	18	6	8	18	9	8
GCGTGTCCCTTATCAG	alt_5419_fdr	98	108	111	104	113	103	136	114	133	96
ACCACGTTCACGTATA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TTACCTGTAGTTAACG	alt_5419_fdr	18	22	29	14	21	17	19	13	21	16
GTCTGATACGGTATTC	alt_5419_fdr	2	3	3	4	1	6	1	3	3	0
TTAACTTGTTGCCCGT	alt_5419_fdr	6	8	7	4	5	9	6	5	8	4
TCACTGATAAGGGGAG	alt_5419_fdr	22	31	40	26	27	35	26	43	38	33
TTTTTCGGGCCTTGGC	alt_5419_fdr	8	19	7	3	9	12	8	8	7	9
CCTTAATTCTTCTTTC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCGAGGTAGCTATTCC	alt_5419_fdr	55	56	82	86	76	65	60	68	62	82
CGGCTTTCATTTTCGT	alt_5419_fdr	65	43	70	68	34	72	49	62	43	65
TTACTGGGAGGGTGCT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCGGACACTAGGGACG	alt_5419_fdr	22	25	39	31	33	29	19	22	35	26
GCTTATCAGTTCGAAT	alt_5419_fdr	35	44	51	43	27	38	45	39	40	34
CCATGCTTCCATCCGT	alt_5419_fdr	90	64	83	71	79	83	74	95	76	70
GTGGGACAAGGCTTTG	alt_5419_fdr	90	112	142	107	91	106	85	91	103	93
TGCTTTTTCTCCGTCG	alt_5419_fdr	181	159	260	192	206	192	189	195	192	165
CCCTTCTTCGCCTCCC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGAACCCTTGTGG	alt_5419_fdr	45	65	60	79	48	50	61	52	58	44
TTCTTAGATCAACCGT	alt_5419_fdr	40	51	45	52	41	43	44	47	47	45
TCTATTTAAACCCTCC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCACCGGAGTCGG	alt_5419_fdr	6	7	5	10	8	8	4	4	12	6
TTCCGGTCGCTTGTCC	alt_5419_fdr	3	10	11	6	24	1	14	5	6	2
GCACAGATGGGTTTCA	alt_5419_fdr	7	5	12	15	3	9	15	14	10	10
GGTTAGGGGGCGCTCT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GGTACTAAAGCCCCAA	alt_5419_fdr	18	12	14	9	5	9	10	8	7	13
CTGGTAATCAGCTTAG	alt_5419_fdr	5	2	10	8	10	4	2	8	3	3
CGGCAGTCTGCTACTT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCTACTGTCTGAA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTTGACTACGCCT	alt_5419_fdr	39	75	41	22	63	26	94	49	72	36
ACCTCTTATTGCGACA	alt_5419_fdr	13	30	22	23	30	20	37	15	37	29
ACACCCCGTTAAAGGT	alt_5419_fdr	12	9	7	5	15	2	16	6	7	4
TTCGCTATTCAACCGT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
ATGTACAAAGGAACGG	alt_5419_fdr	14	24	23	20	22	14	15	18	21	15
GCATCGCACTGCATCA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCGTAGCTAGCAG	alt_5419_fdr	14	14	25	16	19	17	23	15	27	21
AGCTCTGTCGCCTACC	alt_5419_fdr	79	83	102	102	96	74	76	71	77	97
CTACATGCTGTGCATG	alt_5419_fdr	16	19	11	23	10	14	11	13	7	10
TCGGGATGGATGTGTC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCCGTAAAGCTAT	alt_5419_fdr	30	30	39	30	21	29	32	31	31	21
GACACTCGGCTCAATT	alt_5419_fdr	29	42	43	55	55	41	41	37	53	25
CTTTATCAATAGTAAC	alt_5419_fdr	34	20	31	32	25	18	33	22	37	14
TCTCGGTAATAAATGT	alt_5419_fdr	12	12	11	7	12	15	6	9	11	14
TCGGGCGAACTTACCC	alt_5419_fdr	9	8	20	7	19	6	18	8	21	7
GCCTTGACCTAGACAA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTCGCCTTTTTTT	alt_5419_fdr	39	27	72	60	42	68	27	40	35	43
GGATATTGGTCTGACT	alt_5419_fdr	81	73	84	70	70	81	73	60	76	57
TAATATTGGATTGACC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CGTGATACTTGCCACT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCCCTAGGAACTC	alt_5419_fdr	18	15	12	5	6	5	13	10	12	10
CGCCATTCTGTATTTA	alt_5419_fdr	34	20	19	21	27	24	25	22	28	19
GCCCGGGGTCCGCGGT	alt_5419_fdr	23	31	34	36	45	22	37	19	44	23
CCTTTATACCATATGT	alt_5419_fdr	23	23	31	22	28	27	43	19	24	21
TTCTTTCGCCGGTGTC	alt_5419_fdr	21	18	36	27	32	18	34	22	27	16
GCTGGGGCTTGTCCTA	alt_5419_fdr	14	6	19	13	21	15	22	11	24	13
TTTCTGTTCTTCCGAA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTAGGACTCTCAC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TAATCTATCTTCACGG	alt_5419_fdr	27	30	26	35	17	32	30	21	19	13
ATACTATCACCGTCAC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTAAATATACAA	alt_5419_fdr	15	19	26	16	16	11	17	11	24	18
ATCATCCGTATACTGG	alt_5419_fdr	10	11	31	24	15	14	14	13	16	16
CTTTCCATTTCAAGTC	alt_5419_fdr	50	46	38	26	35	42	41	37	33	35
CACACTCTCCGGCCAG	alt_5419_fdr	31	78	38	38	66	31	79	26	73	34
GTCTGTTGTATATTGA	alt_5419_fdr	72	70	98	55	60	74	86	76	73	69
CGGTGAACACGTTGCG	alt_5419_fdr	31	30	38	29	39	34	32	24	43	29
AGTGCTTATTAAGTAC	alt_5419_fdr	9	7	10	13	3	5	6	8	8	6
ACACTCTCTCGTGCTC	alt_5419_fdr	4	15	5	2	22	4	20	5	30	7
GATGGGGGGCCCCACA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGCAAGGTCTAGA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTATCCTGGTCAG	alt_5419_fdr	91	70	114	106	81	86	77	103	59	77
CACTTAGCATTGTTTG	alt_5419_fdr	54	62	68	71	32	48	44	40	49	34
ACTGTACTCCCAATAA	alt_5419_fdr	55	48	81	62	69	34	59	52	76	53
AGCATGGCACTATTTT	alt_5419_fdr	58	39	42	51	48	33	56	46	46	44
ATTTTTAGTTCGAGAA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTTGCGGCTAAT	alt_5419_fdr	40	31	63	46	31	36	46	34	47	53
CATCCATCATTGATCG	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGGTTACGAACGG	alt_5419_fdr	21	17	16	21	20	17	17	16	11	13
GCAAGAGAGTGAATCT	alt_5419_fdr	6	6	11	5	5	7	11	6	10	3
TTAACCGTTCTATTTG	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
ACGCCTTACGTCATAT	alt_5419_fdr	22	17	27	18	23	18	24	27	28	20
GCCCCGCTATCTTATT	alt_5419_fdr	33	28	47	37	34	28	32	28	35	19
TTATAGCCATAGCATG	alt_5419_fdr	4	5	1	6	8	7	4	6	8	6
CGTGCCTTTGAGACTC	alt_5419_fdr	29	19	23	14	22	26	39	33	28	20
CGTGGTACTAACATAT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTTTGTGACTGGA	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCCGAACACGTGCTAC	alt_5419_fdr	23	37	19	22	29	21	35	25	32	18
AAGCCCATAGTGTAGC	alt_5419_fdr	1	0	2	1	1	3	2	3	0	0
TATCTTCTACGAGGAC	alt_5419_fdr	11	5	12	15	13	10	7	11	7	4
GTCTTCAAGGAGGAAA	alt_5419_fdr	6	10	16	19	12	9	14	12	13	13
TCAAGTAGATAGTCCT	alt_5419_fdr	5	6	16	11	10	13	16	11	18	8
GGCTCAACTGCTTCGC	alt_5419_fdr	18	16	19	20	17	12	18	21	16	11
TTAAGGACCTCGTGAC	alt_5419_fdr	47	53	59	53	46	39	43	41	58	43
TCCTCAAACAACGCTT	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCAACTGCGCGTTCGG	alt_5419_fdr	41	59	43	44	45	27	36	33	46	37
TCGCTGTATACCATAT	alt_5419_fdr	16	8	18	18	18	12	15	6	15	14
TACGTCGTCCCTAGGC	alt_5419_fdr	74	86	103	100	63	83	76	71	86	91
TACTTACCGTTTTAAA	alt_5419_fdr	6	60	10	7	81	7	62	11	84	6
GTGGTACTGGTATTCT	alt_5419_fdr	27	29	42	45	45	43	40	34	48	41
ATAACCTTCGCTATTT	alt_5419_fdr	57	42	43	31	51	46	32	55	60	38
TTGGACCTGAATAGCT	alt_5419_fdr	36	26	47	39	41	28	40	39	52	32
GACATCATGCCTAAAC	alt_5419_fdr	48	33	44	38	35	35	27	41	47	38
GAGGTTTTCCCCCAAG	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
CCACACGCTTCTATTT	alt_5419_fdr	3	2	5	3	3	6	3	2	3	5
TGGAGTCACCCTGGAA	alt_5419_fdr	5	6	7	1	8	1	4	3	7	2
CCTTTAACTAGCCGGC	alt_5419_fdr	4	2	5	3	5	3	1	0	6	5
AATTAGGGCATACGGC	alt_5419_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTAAACTTTGGG	alt_5419_fdr	4	8	7	7	9	4	8	6	3	7
AAGCATGAGCTACAGA	alt_5419_fdr	16	19	29	19	13	17	19	15	12	16
AATATGATATTTTAAA	alt_5419_fdr	321	371	514	449	338	377	357	321	367	328
AGTATATTTTTAGAGG	alt_5419_fdr	1	0	0	1	2	0	1	0	0	0
CGGTGTTTCTCTTAAG	alt_5419_fdr	117	106	126	131	103	98	104	92	91	82
TATGGGTAAAACGAGC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCACATCTCCGCT	ref_1117_upstream	62	58	91	71	52	65	33	58	48	34
GTTTCTGGCGAGCTTC	ref_1117_upstream	6	3	13	12	6	12	8	4	10	5
GGGATGGCGAGAACAC	ref_1117_upstream	25	16	46	33	22	22	20	33	28	18
GCTCTCGCGGATTCTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGCCGGGCCTTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGGAGTTTCACCA	ref_1117_upstream	24	20	33	36	23	22	15	20	29	15
TCTCGCTTACATGAGT	ref_1117_upstream	14	7	13	13	10	9	11	12	11	11
TTCCTGGTGCACGTTG	ref_1117_upstream	20	29	39	44	23	25	27	24	18	33
GCAGGATGGAAAATTT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCCAGCCACTTTC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCGCAGGGGGACGTTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GAAATTACTAAAGCGA	ref_1117_upstream	93	47	117	97	48	76	71	65	71	84
TTAGGGGAGTGCAATG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TACGCAAATGATAATA	ref_1117_upstream	63	35	62	82	34	67	34	52	35	50
GCATCCGACGGCTATA	ref_1117_upstream	30	15	27	31	19	19	12	16	28	24
TCGATACCTGCTCAGG	ref_1117_upstream	10	9	7	2	3	8	5	3	5	10
TTTGATGGCTGTCTTT	ref_1117_upstream	10	21	35	21	25	26	20	25	18	28
CGATGTTCTCCAGTGG	ref_1117_upstream	53	48	70	51	57	46	47	45	50	44
TAGTATCTTTCCCATC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AACTACTGTGATGTGG	ref_1117_upstream	9	13	19	6	11	10	13	4	6	6
CACTACGACGTGCATA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGGGAAACGATCGTCG	ref_1117_upstream	7	5	8	13	3	19	8	9	5	8
CGTGTCATTGGGTTTT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTGGTAGGCTTAC	ref_1117_upstream	36	20	33	36	38	32	21	36	17	29
TTACAGACCGACTGCA	ref_1117_upstream	12	15	16	17	15	11	8	12	12	16
TAAATCGCCACATACC	ref_1117_upstream	44	31	46	43	32	33	28	35	26	38
TTTAAAGATAGTATTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TATCTCTAATTCAGCT	ref_1117_upstream	51	35	56	70	32	39	32	34	27	42
GGTGCCATAGTGACAG	ref_1117_upstream	26	15	22	27	13	22	20	27	14	20
AGTGCCTCATGAGCTA	ref_1117_upstream	6	10	11	5	5	9	12	4	8	10
GAATTAAAGGCGCGTA	ref_1117_upstream	60	32	95	72	44	55	35	53	54	53
ATGTTCGGCGATTTAG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GAGGATAAGTACTTAT	ref_1117_upstream	57	45	70	48	38	51	39	45	50	49
GATACGGCGTGCAGTC	ref_1117_upstream	44	33	58	64	40	47	39	46	20	46
TTAATCACTACTTTAT	ref_1117_upstream	41	27	31	31	33	34	38	35	20	36
ATCCGTCGGCATTGCT	ref_1117_upstream	24	12	21	20	14	18	7	10	17	14
TAGCAGTGCTGTACTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTCGACTTTAGACCAT	ref_1117_upstream	0	0	2	2	2	0	1	1	0	1
CTTTCGCCACAGAGAC	ref_1117_upstream	36	40	57	52	40	46	57	38	41	44
TGGATGTTCCCAGTAG	ref_1117_upstream	102	66	142	102	66	88	76	96	90	74
CCGGGCCTCATCCCTG	ref_1117_upstream	5	9	4	4	4	3	3	8	6	3
AAGGACCGCTTCTGCT	ref_1117_upstream	40	23	41	25	21	31	22	29	24	24
TCATTTTCAAGGTTAC	ref_1117_upstream	28	14	35	22	20	28	21	19	21	25
CACCATATCTCCTAGT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTGTACTTTTTGGCTA	ref_1117_upstream	19	30	42	28	28	27	17	28	26	27
TCTATGCCGTGGACAG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTGATTTGGGCACTTG	ref_1117_upstream	24	14	18	27	20	20	17	22	26	21
TAGCCGCCCAACAAGT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGTAAATCTTCAT	ref_1117_upstream	63	40	67	64	49	73	49	63	45	59
GGTAAACAGTCCGCGC	ref_1117_upstream	42	15	25	36	16	22	22	34	18	27
TTTTATGGCATTAACG	ref_1117_upstream	33	27	44	33	35	52	23	44	34	43
TGGATCACTATAGACT	ref_1117_upstream	6	1	9	9	3	5	4	8	7	12
TTTCGATATTCATGTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGCCTCTTCATCA	ref_1117_upstream	337	324	435	448	356	361	401	378	354	315
CTACACGGCGTTCAAA	ref_1117_upstream	69	44	61	65	51	52	38	43	60	59
CAGTTATTGCGATGAC	ref_1117_upstream	16	16	35	17	14	28	26	23	22	18
GTGCCTCTTTACGCCG	ref_1117_upstream	10	6	16	12	9	10	4	9	8	12
CGGGTGCTCAAGCTCC	ref_1117_upstream	81	78	125	104	93	84	87	89	97	85
TTGCAAACCTTGCGTT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGGTCCCGGTTTT	ref_1117_upstream	51	46	78	67	36	55	33	69	36	50
CCCTAGGGAGCACTAA	ref_1117_upstream	13	18	16	16	24	7	24	13	30	12
TATTACCCCGTTCTGC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCTAGATTCTGTC	ref_1117_upstream	42	38	52	54	33	46	32	40	52	45
GTCGGTTTTTCTCATT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GGGTGTGAACGGCCTT	ref_1117_upstream	20	33	36	28	22	31	31	23	20	21
ATCTGAGGAGTAGACC	ref_1117_upstream	24	10	32	28	27	24	26	38	33	11
GTTTTCTATTGCCGCG	ref_1117_upstream	19	10	37	22	16	15	19	17	5	24
GGTTGGTATAAGCTTC	ref_1117_upstream	34	24	28	19	14	25	21	34	20	30
TCAATCTACATTGCAC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGCCGGGCCATA	ref_1117_upstream	264	217	411	271	230	302	239	266	244	267
TGGAAGTGTCATGGTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGGGGCCCTTATC	ref_1117_upstream	57	32	52	54	58	44	36	49	35	42
CTTTACCGGTTCGAAT	ref_1117_upstream	20	26	45	30	27	20	21	34	29	21
TCTTAGTCCCGCGCGG	ref_1117_upstream	24	13	43	23	17	19	19	15	19	28
GATACTCGTTTTCTAA	ref_1117_upstream	2	5	4	13	2	9	6	4	4	7
GTGAAGTCATAAGGGT	ref_1117_upstream	11	16	29	13	17	14	11	20	14	12
GCAGTCTACCTTGGTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGCAAGACGGAGA	ref_1117_upstream	94	86	143	88	62	88	70	98	76	107
CTGGTCCAGACTTTTA	ref_1117_upstream	5	2	9	4	3	2	2	5	4	5
GGATTTAGATGACCAT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GGATAATGTACCGCCT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGGGACTGTACAT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGATGTCACGCGG	ref_1117_upstream	33	15	35	30	24	30	15	27	16	27
TTGAAGGTATCGTTGG	ref_1117_upstream	23	18	43	23	25	26	30	16	31	24
GTGTTTAGGCGCTGTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GCGAATCGGGTCCTGC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGACTTGCGCATCCGT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GAGTATTACAGTAGCT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTGCCAACTATGG	ref_1117_upstream	40	27	45	35	30	33	43	37	33	38
ACGACGCACTGCAGAG	ref_1117_upstream	10	3	8	10	12	11	3	10	5	9
AAGTGTATGAAGCTTT	ref_1117_upstream	27	19	39	35	20	30	22	29	29	16
CTTGGGACTGTAACAC	ref_1117_upstream	1	2	2	4	3	5	0	5	0	1
CTTTGACACTTCGACG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGTAAGATTCGGGGGA	ref_1117_upstream	30	19	35	33	23	38	23	23	14	30
CGCTCCTAGGTACCGC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TACTGCGGAACATGCA	ref_1117_upstream	60	50	80	54	43	73	44	71	50	51
CTGTTAGATGCGTATT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTGCCCAGTTCCT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTCTTACTCACG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTTCGCCTCGGA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GCGCAGGTTCCTATCT	ref_1117_upstream	46	35	49	49	41	47	39	46	37	47
GCCTACGCTTTGTCGT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCCATAGAGTTGC	ref_1117_upstream	40	24	51	37	37	41	17	40	35	23
AGCCCAAGTAGTGGTT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCTCTCCGTCCGA	ref_1117_upstream	51	49	47	42	49	45	52	49	65	42
GGTTGTTTGGCTCAAA	ref_1117_upstream	27	24	25	26	19	11	17	18	23	15
ATGCCCCTAAATGCTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GATATATAGATGCTCG	ref_1117_upstream	9	8	15	6	8	6	6	20	2	9
GCCATCGACTCCCCAA	ref_1117_upstream	4	0	6	8	0	3	3	4	2	6
CTCAATTTCCGCCTTT	ref_1117_upstream	35	18	27	29	21	34	28	23	14	26
CCTACCCAGCAGTTCT	ref_1117_upstream	115	78	140	95	70	125	72	88	80	104
CTTCCAGCCGTGGCAA	ref_1117_upstream	33	23	36	43	34	18	37	29	34	36
GTATTTAGGTCTATGC	ref_1117_upstream	25	19	26	16	16	25	22	18	18	19
GGCCGTCAATCACATT	ref_1117_upstream	0	0	0	1	0	0	0	0	0	0
TACTGAGAAGCGCACA	ref_1117_upstream	29	25	39	29	15	29	19	20	26	16
GCTGTCTTTCTAACCA	ref_1117_upstream	3	4	13	1	3	3	9	2	1	3
GATATCTCTGTATTCC	ref_1117_upstream	19	10	25	5	14	23	10	18	12	15
CCCTCTCGGGTAGAAG	ref_1117_upstream	10	10	11	15	5	8	3	11	12	12
CGCTGATCCGCTTCGG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCCATCCCACGGT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GATCGGATTTTTTTTC	ref_1117_upstream	63	51	66	59	40	71	53	44	39	51
TGCTATCAAGGTAAGG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGACCATAGGAAA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGACGCTTCAGTCCCT	ref_1117_upstream	23	11	25	37	21	30	25	35	14	26
TATGCTCTAGTGTGCT	ref_1117_upstream	55	39	58	53	45	57	50	34	49	29
GCAGCCCATGATCAAC	ref_1117_upstream	2	2	2	3	0	1	3	1	2	1
CCGTTAATGCTTAATA	ref_1117_upstream	34	30	53	43	36	38	33	41	45	37
GGACGTGGCTCTAGAA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTTATGTGGTGAT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGAGATAGCCTGGGCT	ref_1117_upstream	24	10	20	12	15	19	21	13	7	17
TATCGTCGTACTCACC	ref_1117_upstream	3	18	1	0	16	1	6	1	9	1
TGCGTGATCACACACG	ref_1117_upstream	10	10	13	11	9	13	8	15	10	10
CCCTCGATGCCCTCCA	ref_1117_upstream	17	46	20	18	39	20	29	20	34	21
TTCTAGTGCACATACA	ref_1117_upstream	86	73	111	64	72	84	73	83	62	98
CAATTCCAGGCGAGGT	ref_1117_upstream	31	28	33	34	23	30	19	41	27	24
GCCGCTTCAATCTGTT	ref_1117_upstream	11	18	13	18	11	10	17	11	27	12
CTATTGATAGATACAG	ref_1117_upstream	22	30	31	38	22	28	34	32	30	18
GCCTTATCCAATAAAC	ref_1117_upstream	11	14	29	17	22	19	14	22	18	22
TTTCCTGCTCCGGCGA	ref_1117_upstream	11	15	14	24	12	14	9	14	7	12
TCTCATTTTGGTCATC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GCCCAACGCGCCTGCA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CATCTGGTTCTATGGT	ref_1117_upstream	2	5	9	8	2	6	3	11	6	6
ATAACCGCCGAGCTTG	ref_1117_upstream	80	46	91	55	54	72	58	61	52	67
GTGCATACTCTTATAT	ref_1117_upstream	59	43	64	58	40	46	53	66	58	36
CCATGTTTGTGGGGAA	ref_1117_upstream	55	49	63	70	66	58	64	51	67	61
GATGTGTTGGAGAAGT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCTATCAACCAAC	ref_1117_upstream	29	20	23	34	17	23	16	22	28	16
GGTTTCCTAATTTCTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGCAGCGATCAGGCTC	ref_1117_upstream	57	42	61	62	37	64	44	57	43	59
CTTACGGGCTTTGGAA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGGATTGATTCAC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTGGCGCCGGAAG	ref_1117_upstream	60	58	68	66	40	57	58	43	43	56
CGTTCTTGATTATATT	ref_1117_upstream	11	2	6	2	3	5	3	4	2	2
TGATTCCCGTGGTACT	ref_1117_upstream	58	38	53	52	29	58	36	53	33	55
ATGTCTGTGCTTAAGA	ref_1117_upstream	32	34	57	40	32	41	39	40	39	39
GAAATTTTAACTACGC	ref_1117_upstream	1	6	5	5	3	5	4	5	5	4
CGGTTAAGCCAGCGGT	ref_1117_upstream	53	35	67	46	39	51	43	60	38	48
AATCGCGCGAATTTTT	ref_1117_upstream	97	63	109	106	64	100	54	76	71	73
GAAATCAAAACGGCGC	ref_1117_upstream	68	48	72	86	37	48	39	34	40	55
CGCGCCGGGACACTGG	ref_1117_upstream	25	19	24	28	19	19	18	28	17	22
ATTTTGTGCTTTCTTG	ref_1117_upstream	37	27	41	43	30	22	32	38	36	34
GCAAGTGTTGCCCTGG	ref_1117_upstream	23	25	21	21	14	23	18	19	18	14
ATTACTCGCACGCAGT	ref_1117_upstream	11	7	22	20	6	14	8	13	13	12
TTTGAGATGACTGTAT	ref_1117_upstream	50	37	59	53	41	52	27	60	41	33
GTTTCTTAGGAGTTAT	ref_1117_upstream	34	28	41	47	29	37	20	35	11	32
TAGTTTTGGATCTCGA	ref_1117_upstream	64	56	88	67	73	66	53	59	82	72
CGTAAGGACAAAATCC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GGCCACATTTGTAACA	ref_1117_upstream	6	13	11	7	11	5	14	4	15	9
TTGTGTTCGCGTGCTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTCATCCGTTTGTTAT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCGTTCCCAGAGA	ref_1117_upstream	129	97	159	115	112	120	121	110	134	104
CATCAGTGGCGTAACG	ref_1117_upstream	491	322	492	467	344	400	333	399	291	390
TTGCTTGTTTCCACAA	ref_1117_upstream	15	15	11	21	11	13	13	15	20	15
TGTATGTAGAATTGGT	ref_1117_upstream	97	58	98	80	51	76	66	70	83	61
CTTTGGAAAGTTTATG	ref_1117_upstream	4	3	9	4	6	3	3	4	6	4
CAGAACGAAACCACTT	ref_1117_upstream	104	73	109	108	85	64	64	87	75	72
TAGGTGGTCCACACCG	ref_1117_upstream	54	59	76	70	36	58	45	61	51	54
CTGGGGTATCATTCGT	ref_1117_upstream	103	114	185	119	112	132	122	130	116	121
CAAACAAATCCGAATT	ref_1117_upstream	16	8	30	18	16	17	18	18	10	21
GCCATGGCCCGAGCTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTCATAGTAGACTCCT	ref_1117_upstream	0	2	0	1	3	0	1	1	1	2
CTGACCTTTTCCACAT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGCGCCGCCGGAAAGC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGAGTATCAGTTT	ref_1117_upstream	10	6	21	13	9	21	14	19	15	11
GCCCTGTGCTTTAAGA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TAGAACGGGTGGGTTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGCCACTTTTAGC	ref_1117_upstream	20	37	36	19	28	23	28	19	37	11
CATGATTTTATGCCAG	ref_1117_upstream	11	6	12	2	11	15	7	7	5	8
GTCATGTCCCTAGTTT	ref_1117_upstream	109	49	111	124	72	93	81	73	80	69
AGCTTCTCAATTGCAG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTAACGTTAGCGTCCT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGGCATTCACTCA	ref_1117_upstream	310	207	348	319	185	284	201	305	247	236
CCATTTAGCATACCGT	ref_1117_upstream	25	18	29	34	25	36	25	31	33	15
CTCCGGACAGCCCCTT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGCACTCCTGCCAATG	ref_1117_upstream	14	50	20	18	58	19	42	21	55	12
CTCTTAATAACCAATG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TTACTCTTTTTTGACC	ref_1117_upstream	16	13	15	18	11	4	7	16	13	13
CCACTTGTTACAACAG	ref_1117_upstream	50	53	55	55	68	52	51	45	52	46
CGCTGTGAGACTGTGG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCCTTTCTTCGGT	ref_1117_upstream	5	13	7	5	9	9	4	12	2	7
GTGAAATGCAGGGGCC	ref_1117_upstream	160	99	178	145	93	177	91	125	113	152
TCACGTCCTAACCCAT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CGTAGCGAGTCTGTCT	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTTACATATGGTA	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGCACCTAGAGAG	ref_1117_upstream	38	30	49	45	35	26	28	35	27	42
TGACTGTCGGATTTAC	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
AAGCGCCGTGTCGGTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTAATACGTTCTG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCCTTTAGGCAAG	ref_1117_upstream	14	19	15	15	24	16	20	23	18	28
TCCGATCTTGTTAACG	ref_1117_upstream	0	0	0	0	0	0	0	0	0	0
TGGCACCTTGCTTATA	ref_1117_upstream	86	59	118	78	49	84	71	81	87	64
TACGTTATGTCCGCAC	ref_1117_upstream	15	4	18	13	12	19	17	21	12	26
GGTTGTACAGCCCACC	ref_1117_upstream	41	37	58	54	25	45	38	42	40	43
GTTTCATGGCATTGGA	ref_1117_upstream	15	24	46	28	29	23	13	19	26	19
ACTAAATTACGTTGGG	alt_4926_fdr	36	42	64	41	34	47	33	51	68	30
CGAGCGTGTGCAAAAC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CAATGGTGTACCTGTG	alt_4926_fdr	32	24	28	27	30	32	38	21	33	24
TTCAGTTGACTTTTCT	alt_4926_fdr	37	34	54	41	46	56	47	27	60	51
GAAATGCCTATCGTCA	alt_4926_fdr	45	43	72	53	32	47	47	46	43	43
GCATCCCGACTGCCAA	alt_4926_fdr	8	20	24	19	14	12	5	20	11	17
CGGCACACTAATTCTT	alt_4926_fdr	21	19	42	22	24	20	16	35	12	25
TGTATCTTCTTTCGGA	alt_4926_fdr	0	4	7	4	3	4	3	7	5	7
GTCGCATTTCCTGAAC	alt_4926_fdr	15	19	23	11	14	12	11	6	14	12
TGACATTAGTTTTATG	alt_4926_fdr	37	37	60	47	38	56	40	39	45	39
ATTCGAAGGGTGCGCA	alt_4926_fdr	3	3	7	0	6	3	6	2	8	2
ACCCGATGGCCCAAAT	alt_4926_fdr	90	66	116	65	52	91	89	88	85	70
CCTTCGAAATGATTTA	alt_4926_fdr	36	30	39	29	28	23	27	24	26	36
CTCGGATTTGCATGTC	alt_4926_fdr	8	11	9	6	11	7	10	12	18	12
CGGTGTGACATCCACG	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
ATTACCTCTGAGGACG	alt_4926_fdr	104	94	122	112	103	87	105	72	105	85
CACCTTCTTGCGTAAG	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGCTTCCGTACTC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTGCACATGGTTT	alt_4926_fdr	17	14	19	16	18	7	13	7	10	7
GTTGACAACTACCGCG	alt_4926_fdr	99	126	141	122	116	106	138	108	147	99
TTTAGTACGTCGCTCT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
GGAATTATGCTCGTTT	alt_4926_fdr	54	32	65	51	50	46	35	47	46	42
CTAGTAGATGACATAG	alt_4926_fdr	23	27	26	26	19	17	26	23	22	14
CACCTAAGCTGGACCA	alt_4926_fdr	11	7	36	15	9	15	16	16	9	15
CATGAACAAAATCACT	alt_4926_fdr	66	40	88	72	43	53	58	73	58	51
GATGCTACTTGGAGTT	alt_4926_fdr	75	66	87	82	94	83	81	62	68	59
TGAGCCGATGCGCATT	alt_4926_fdr	3	14	1	2	4	2	4	2	5	1
GATTTTAAATCTAAAT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
GACGTGCTGGTTTTTA	alt_4926_fdr	80	87	110	115	92	110	85	104	95	89
CCTTTCTACTGATAAA	alt_4926_fdr	55	38	75	61	44	44	46	40	37	46
CCTTGGTTGGCATGCC	alt_4926_fdr	2	0	1	3	4	0	0	5	1	0
AACTCGAGACGTCATT	alt_4926_fdr	22	8	15	7	14	10	5	11	9	12
GTTTGCGTAACTCAGC	alt_4926_fdr	25	16	32	24	30	30	28	36	21	31
TTGTCCTGGGTTCCTT	alt_4926_fdr	13	15	13	8	11	13	12	5	9	5
GCGCCTTTTTCATGAC	alt_4926_fdr	15	9	15	10	8	11	10	10	8	8
TGGCCATGGGCAACAT	alt_4926_fdr	136	112	154	120	121	111	102	130	124	113
GGCTGCTTTACGTGCG	alt_4926_fdr	29	9	23	17	8	15	11	14	14	13
CGAGGGTAAAGTTAAC	alt_4926_fdr	23	12	23	24	21	27	16	14	22	15
CTCTGTATCTTCCCCA	alt_4926_fdr	47	36	47	45	44	45	39	52	40	29
CATTGTGAGCCGAAAT	alt_4926_fdr	27	34	36	30	37	29	36	24	32	31
ACGAGAAGCGGGCTGA	alt_4926_fdr	72	51	92	71	48	65	51	68	54	65
GGACACAGATATCGCT	ref_4926_fdr	75	79	114	99	79	81	72	61	67	64
GGTGCATTCTCTTTGG	alt_4926_fdr	17	17	22	16	21	14	22	21	18	17
ACGCAAGGCAACGTAT	alt_4926_fdr	63	81	77	63	45	58	45	48	54	52
CACGCACAATTATCGC	alt_4926_fdr	28	36	42	27	30	35	47	36	49	33
TCCGAGTTAGGGAATC	alt_4926_fdr	18	18	29	28	24	21	17	24	17	20
CCTTCGAACGTACCAC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
TTACTTAACGCCAGAG	alt_4926_fdr	36	39	46	46	33	39	45	23	39	30
AGCCAGGGTTGACCGT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCGCAACTCGTTT	alt_4926_fdr	36	35	45	47	32	49	36	37	43	37
GCTTATAAACTAATTA	alt_4926_fdr	18	27	48	26	28	29	32	30	18	19
CCGTTATAAATCATTC	alt_4926_fdr	50	24	65	36	38	49	38	37	50	35
TATAAGAGAGTAACTC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTTCCGGCAAGCG	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CGTGGTGAATCAAGAG	alt_4926_fdr	23	14	21	21	28	13	18	17	17	23
AAGCAATTACCTCAGT	alt_4926_fdr	37	33	49	33	48	24	45	26	37	28
CCAATGGCTTATGTGC	alt_4926_fdr	81	87	101	87	86	82	105	80	75	71
TCCTTAGCCGGCGTGA	alt_4926_fdr	125	108	171	147	102	117	138	114	153	116
TGTCAATGTACCATAG	alt_4926_fdr	2	2	6	3	7	3	6	6	5	1
GTCACCGATGGTTATT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCTAAGAGCCCAT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGGTCCATTAAGA	alt_4926_fdr	143	136	196	131	169	133	185	136	169	137
AATCCGTGCCTATTGA	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGGTTGCGCGTTG	alt_4926_fdr	164	151	188	174	154	148	134	156	165	148
TTGTCAGGTCTGTTTG	ref_4926_fdr	211	280	253	255	253	185	260	214	257	202
TTATGACCCATGAGGC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
GCATGCAATGCTTCAA	alt_4926_fdr	74	53	79	78	54	64	67	62	77	65
CTATCGTATTAGTTAA	alt_4926_fdr	16	18	24	35	30	26	33	31	32	18
TGATCCTGCCAGAGAT	alt_4926_fdr	45	30	40	23	29	37	25	22	25	26
TTTTGAAAGTAAGATC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTCGGAAGGAGAC	alt_4926_fdr	13	23	29	21	15	19	19	14	22	20
CGGCATCGTAAGGTGG	alt_4926_fdr	32	38	33	29	33	24	25	39	20	27
CCTCTCATAGCTTGAT	alt_4926_fdr	17	28	39	37	26	25	21	18	30	21
AGTGTTCATATCAATT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CGTGATAGTGCTTGTT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGTGATACGTAGG	alt_4926_fdr	235	237	279	231	265	202	275	190	276	218
TACCCTGACAATACGA	alt_4926_fdr	100	120	117	92	116	93	98	93	124	73
AAGTTTTAGTGTCTTC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTACCGTGTTCGC	alt_4926_fdr	30	43	34	32	49	24	67	28	64	32
CGGCCAGGCTCCTTGT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTACCGATCTTAC	alt_4926_fdr	11	10	14	5	7	13	19	8	9	11
AGCTTCAGCTGTAAAT	alt_4926_fdr	0	0	0	0	2	0	1	0	0	1
TATGCTGGTCACGGGC	alt_4926_fdr	149	145	202	159	108	135	159	85	147	121
TTCCCCCTACATTGAC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGTCACAAGCTGC	alt_4926_fdr	42	73	46	29	42	37	57	21	44	39
TTCTGTAACGGGCAAC	alt_4926_fdr	105	105	145	121	101	129	116	120	115	111
ACTGTCCCTGATTCTC	alt_4926_fdr	10	6	15	7	8	7	6	9	7	10
TCGAGCCCGGCTTACC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGATCGAACCTTC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGTCTTCCACGAT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
ATTTACTAGACCCTTA	alt_4926_fdr	43	24	40	39	46	37	51	41	34	36
TGCCGCTCTATTCAGG	alt_4926_fdr	60	57	65	71	50	51	52	50	49	52
GAGTTCGGCTGTAGTG	alt_4926_fdr	22	59	43	45	37	26	67	28	56	41
GACGGTATGTTACCAT	alt_4926_fdr	8	9	2	11	2	4	8	17	10	5
AGCGAGTTTCTAACTT	alt_4926_fdr	76	63	91	80	52	77	62	66	60	61
TAACGGGTTTTCATAT	alt_4926_fdr	23	34	20	22	27	23	29	24	22	24
TGCCAGTCATTGTAAA	alt_4926_fdr	63	52	69	85	49	47	75	53	67	45
TCTCACTAGGCTCTTC	alt_4926_fdr	26	25	23	17	14	15	17	18	29	20
CGAGCCGTTCGGACAT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
CGAATCCCTAGGATAC	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
GATCCCCCTGACGTAC	alt_4926_fdr	16	19	19	15	16	8	15	12	8	10
TCGCTACTTACAACGT	alt_4926_fdr	25	41	39	28	42	31	38	31	52	32
CCCGACTACTCGGGTT	alt_4926_fdr	0	0	0	0	0	0	0	0	0	0
AGCACCAGGCGCGCGG	alt_4926_fdr	16	25	49	30	29	42	29	32	34	29
GTCTGGACGCTTTTTG	alt_4926_fdr	31	32	27	33	24	31	21	25	21	24
TCCGACGTGCATAGGC	alt_4926_fdr	25	19	32	44	25	29	24	24	24	36
AGGTCCGATTTTCTGT	alt_4926_fdr	34	41	44	47	41	46	46	52	40	53
GTAAGATGGGTTTATG	ref_3970_RC	54	69	75	61	67	45	53	50	74	46
ACCGCCTTGACATCGG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TCTCCCGGTTCTTTCT	ref_3970_RC	43	53	42	33	30	33	35	30	46	29
TCAAGATCTGTTACGG	ref_3970_RC	51	43	50	41	52	50	42	38	52	34
CTTAGAGGGACTGCCA	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GCGCCTACCACAAGGC	ref_3970_RC	31	38	38	30	27	30	38	38	33	31
CTTGCCAGCTGTTTCG	ref_3970_RC	21	17	19	18	21	23	20	15	15	7
TTATTGAGCGAATTTC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
AGAGGAATGAATCAGT	ref_3970_RC	65	77	64	55	66	50	81	66	62	58
AAGATTGTACGATCTA	ref_3970_RC	105	97	142	119	102	100	117	82	124	86
GACAAGAGCATATGAG	ref_3970_RC	31	33	29	30	31	24	37	33	33	26
CTGAAATTATATTCTT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TCTGGCGACCATGTCT	ref_3970_RC	19	34	12	24	42	6	50	24	50	10
GCGCAGACAGGGGATC	ref_3970_RC	14	18	21	12	9	9	12	12	10	13
CTTCTCACGTTTAAAC	ref_3970_RC	17	19	12	23	21	20	19	13	26	10
CCCGAGTGCAGCTGCG	ref_3970_RC	8	4	6	12	10	4	11	6	8	9
ACCGCACAGTAGGCCC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TTGTGAAAAATAAGTT	ref_3970_RC	17	36	22	20	27	10	23	23	19	27
TACCCTGAGCCCTTCA	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GGCGGATAGGGTTTTG	ref_3970_RC	8	16	14	9	9	10	8	17	17	13
TTACCCAGTCTAGGTT	ref_3970_RC	42	56	65	71	56	44	75	67	59	49
TCGCACCTTCACCTCT	ref_3970_RC	2	1	7	5	6	1	3	4	2	4
TATTAAAGATGTTATC	ref_3970_RC	48	53	99	79	68	61	71	66	66	54
TCAACAATCGTTGTGT	ref_3970_RC	20	17	24	7	22	22	31	15	26	15
CATAATGTGGATTACC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
AGGAATATTGAACACG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
AGAGGGCAAACATCCA	ref_3970_RC	4	4	5	2	4	6	7	7	8	4
CGCAGCTCCAATATGG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CGATTCGCCGAGTTTT	ref_3970_RC	200	166	222	203	183	208	158	179	197	135
GAACGATTCGGCGAGT	ref_3970_RC	70	75	93	92	67	61	78	73	89	54
GCCAATGAAGTGTAGG	ref_3970_RC	43	73	46	57	60	41	82	55	56	47
ACGGTGAAGCGTTCCG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CCTCACCCGAAGTTAC	ref_3970_RC	74	262	86	63	264	62	277	57	297	54
TGTAGGGTGGCCCGTT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TCGGTTCCTCGTATTT	ref_3970_RC	4	5	6	7	4	4	10	7	14	5
ACGCCACCGACGTGTC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGAGCTATGGGT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TCCACAGAATCTTAGT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GGTGCGATAGGGCATT	ref_3970_RC	46	25	55	31	39	42	41	41	46	42
CACTGAATGTGATTTT	ref_3970_RC	14	18	24	20	19	19	18	22	16	12
TGAGTCCTCACAGCAT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
AGTTATTATGCATTTA	ref_3970_RC	114	92	120	111	131	102	110	82	161	87
TGCAAACCAATCCTCT	ref_3970_RC	10	14	23	15	8	17	13	10	13	6
TTCATCGCTAGAGCTG	ref_3970_RC	130	159	171	162	162	135	135	157	176	115
CTACGGAGTATAGGTC	ref_3970_RC	95	100	123	80	92	99	116	75	125	95
TGTTTGGGAAAACTGC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TTCTATATCCTCATTT	ref_3970_RC	11	11	10	8	9	3	11	2	5	11
GCTCACCCTAACTTAA	ref_3970_RC	4	7	7	1	5	5	10	8	10	5
TTCAGTGACCGAGGGG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
AGCCATTCGAACAACG	ref_3970_RC	7	13	10	17	6	8	22	5	14	8
ATGGGATTGGGCTTAG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
AGTAAATTTGGGCATT	ref_3970_RC	25	22	33	19	37	14	31	14	26	25
CGTATGCCGTAGTAAG	ref_3970_RC	24	22	35	23	31	19	27	18	23	13
GCCTGCTCCCGCCCTC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CTGTCCTGAATACTCT	ref_3970_RC	13	9	20	21	18	21	23	11	24	9
GGCTGGATAATACCAT	ref_3970_RC	21	28	20	8	20	23	24	23	21	22
TTGGCGCGAAACGGCT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
ATCTCGTCAGCAGCGG	ref_3970_RC	34	45	40	42	42	39	62	50	46	32
GACAGATATATTTGTT	ref_3970_RC	92	61	95	70	66	70	78	66	97	68
AAACTGAGTGTACTGC	ref_3970_RC	17	14	28	21	20	9	22	25	17	13
CTGTTTCACTACGAAG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CTCTCATTATATCTCT	ref_3970_RC	7	13	13	21	20	9	11	13	11	14
GTGACTTTATATAAGT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
ATCTCCTGATTAAGTC	ref_3970_RC	0	0	1	1	0	2	4	0	0	0
TGTAAACTGCAATGGT	ref_3970_RC	70	81	99	69	108	64	78	68	78	64
ACAACCTATCTAGAGT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CTGTTTAGTCCGGCTC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CAAGGCATATAAGTAT	ref_3970_RC	8	10	4	13	8	7	6	14	8	2
TTGTGCCAAAAGTTTG	ref_3970_RC	82	87	92	80	98	65	78	70	72	55
GATATTAACATGTTGT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TGACTTGGTTTCGTAC	ref_3970_RC	195	218	209	233	251	190	235	199	226	184
TCCGAGAATATGGTAT	ref_3970_RC	1	3	3	4	4	6	5	4	3	6
ATTTCTCCGAGCGTCA	ref_3970_RC	12	11	14	5	4	3	13	6	12	10
TTTTGGGGATGGCCAG	ref_3970_RC	30	19	33	24	23	26	22	14	19	19
TGTGCTTAGTTTCCAG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
ATTACCTTGTAGATTC	ref_3970_RC	6	6	7	5	8	4	9	11	7	3
AATGCCCGTTAATTCG	ref_3970_RC	35	59	64	44	51	45	47	45	53	52
TGAATCCGTTCGATCG	ref_3970_RC	182	182	195	183	178	179	193	154	183	132
CTCAGTCAGGAGTTCA	ref_3970_RC	13	8	22	19	19	12	17	8	9	8
ATCCGTGGTACCGTGC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CCTCAGCTTGGTAGTT	ref_3970_RC	30	38	32	37	27	32	50	24	52	22
CCAATCGGTCCTTGGC	ref_3970_RC	4	4	8	4	9	4	9	5	12	1
TGGTATCTCTCAGTTC	ref_3970_RC	36	47	50	38	42	27	44	36	44	35
TCTATCGGCGTCTCTC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GGAGTTCTTTTAAACG	ref_3970_RC	104	98	84	88	100	88	122	88	118	82
ACTACATGAACTAGCG	ref_3970_RC	13	19	11	9	20	16	16	14	15	12
ATCCATTGACCAATAA	ref_3970_RC	5	5	7	12	5	5	7	4	6	3
TGTATTTCGTTCGGTT	ref_3970_RC	11	11	11	8	8	12	9	6	12	8
CGTTTATCACGATGCC	ref_3970_RC	12	8	11	16	14	10	12	9	16	13
ATCAAGGCTTTAAGGG	ref_3970_RC	17	21	18	16	11	14	17	15	12	15
TCGCAGAAGAGACCCG	ref_3970_RC	39	49	76	61	56	51	54	51	67	56
TTATACGCAGATCCCG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CGGAAAATCTATCAAG	ref_3970_RC	24	30	29	22	23	21	27	16	32	18
TATTTGTCCTTTTTAG	ref_3970_RC	54	36	66	67	41	57	58	41	71	42
CAATCCACACTTGTAG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GCTACTGGTGCACCTT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CATAACCGGAATTGCA	ref_3970_RC	10	7	11	5	11	15	8	10	13	2
CTGGTTATTGCTTGGA	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GTTTATTTCACAAACA	ref_3970_RC	4	4	5	4	6	3	3	0	3	5
GTTCCAATAGTCAATA	ref_3970_RC	67	109	87	70	98	88	78	76	107	65
ACTCCGCTCGGAAGAT	ref_3970_RC	142	120	140	131	128	138	132	113	132	121
TTTTAAGATTAAAGTA	ref_3970_RC	29	31	30	40	30	26	30	33	36	29
TGCATGCATTCTAGAA	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CCTATTTAGGAGAGTT	ref_3970_RC	6	19	10	1	11	7	12	5	11	7
CCATGTCCTGGGTGTT	ref_3970_RC	132	138	113	118	115	100	125	88	120	92
CGTTTGTTGCACCCGG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GGTTGTACTTTTATTC	ref_3970_RC	10	7	14	16	17	1	16	12	18	13
GTTGGTCCCATTCGCG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TCGTCGTCTCTGGCCA	ref_3970_RC	31	20	28	33	39	31	17	26	44	20
GCCATCGTATGCGCTG	ref_3970_RC	10	6	9	11	8	4	16	7	9	4
AGGTTGTGCCCAATAC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GTGTCGATCTTATTTC	ref_3970_RC	23	39	37	33	36	28	27	33	39	39
GATCGTCTTGCACTCG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TTATGTGCTTTATCGC	ref_3970_RC	24	43	30	43	42	34	39	23	46	33
TATTAAAGACGTTATC	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CAATGCCGTCACCCGC	ref_3970_RC	36	58	44	38	46	54	57	42	42	31
GGTAGGACGTGCTGTA	ref_3970_RC	77	92	91	79	74	67	73	79	93	78
CAAGGAGTATATTGAT	ref_3970_RC	52	72	76	62	72	51	70	64	78	62
CGTTCTAAATCGTATG	ref_3970_RC	11	17	18	10	15	7	20	9	24	9
GTCCCAAATAAGGGTT	ref_3970_RC	90	86	139	112	103	92	100	96	130	67
GCGTAAGACTGGGCAC	ref_3970_RC	17	16	18	9	14	18	10	12	20	13
CTTTAACTGTACCGGG	ref_3970_RC	9	2	8	9	6	3	5	6	10	8
GTATCGTACGCCGGCG	ref_3970_RC	89	52	87	60	81	75	76	62	67	56
TTGGCTTGTGCAAATT	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
TGACCACTGTGTTTGC	ref_3970_RC	40	38	44	31	43	34	49	33	59	33
CGTATTACTCGCCACG	ref_3970_RC	31	33	38	41	44	20	39	32	36	33
CTTTATGGGTGGGTGA	ref_3970_RC	20	33	29	29	21	22	37	24	18	22
GTGTAAATCGAACCTT	ref_3970_RC	22	23	28	18	13	22	23	15	24	20
GTACCGAGTGTATTAC	ref_3970_RC	4	10	9	11	7	9	12	8	7	7
TGCATCGCAACATTTT	ref_3970_RC	30	34	36	20	26	30	24	28	28	20
GAGCTATTTCCGCCCA	ref_3970_RC	15	10	12	12	13	9	7	11	19	7
ACTTGCCTAGAGCGGT	ref_3970_RC	65	80	61	59	92	48	65	38	85	48
ATTTAGGGGAGAGTTT	ref_3970_RC	14	12	15	16	9	15	20	15	28	13
GCAAGTTGATCGTATG	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
GAGGTACTCTCCGTAG	ref_3970_RC	8	10	6	11	14	8	14	7	14	5
GGGTCTGCTGTGAGAG	ref_3970_RC	22	32	27	32	25	24	28	27	50	14
GCTGGTATCTGTGCAA	ref_3970_RC	10	16	12	25	8	15	16	15	26	5
GCACTCAGTATTTCGC	ref_3970_RC	29	36	47	39	33	33	34	26	41	34
CCAGGTACTGCCCTTA	ref_3970_RC	0	0	0	0	0	0	0	0	0	0
CTTTCAAATGTGCGAT	ref_3970_RC	21	18	10	12	13	10	17	17	15	28
GTCTTTATAATTGTCG	ref_3970_RC	36	38	35	34	27	28	37	32	42	24
ATTTGCGTATGTGTGG	ref_3970_RC	73	89	82	78	85	56	81	80	97	55
AAACCCCTTAGTGGAC	ref_4037_fdr	34	52	42	39	63	34	47	36	50	26
CCAACCATTCATTTGT	alt_4037_fdr	0	13	0	0	18	3	20	0	16	0
TTCCGGTTGTCTGTTG	alt_4037_fdr	56	66	37	64	60	56	75	56	69	42
AGGCTGATAACAATCT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CGATTTCTTTTCAAGT	ref_4037_fdr	254	291	304	279	259	235	302	249	280	218
GCCCGTGGTTTATTTA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCATGACATTGCG	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCTTAATATGAAA	alt_4037_fdr	2	1	4	4	4	1	4	5	5	5
CATATTCGGGTTTGAA	alt_4037_fdr	13	27	19	29	18	12	26	15	30	10
GCTCACCTTCGTCACA	alt_4037_fdr	9	37	11	15	25	8	42	11	27	14
TCCTATCTTACGCAGC	alt_4037_fdr	24	27	19	17	28	18	24	16	28	21
TGTCAGCATCCTCAGC	ref_4037_fdr	12	9	10	16	9	11	6	6	13	8
ATGATAAAGTAATTAA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTTGTTACTGCCG	alt_4037_fdr	39	68	60	50	69	40	66	49	72	27
GTAACTAAGGTATGTC	alt_4037_fdr	7	10	6	5	8	7	5	4	6	5
CGCTGGGACTCTAGTA	alt_4037_fdr	30	35	32	21	41	31	37	30	64	33
TAGCTTAAGTAATGGG	alt_4037_fdr	113	110	122	118	116	89	155	108	165	105
GCCATCTCCGCACTGT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTACTGTTCTTGT	alt_4037_fdr	64	95	67	61	101	56	86	45	116	37
TCTGCGCGAGTCGGTA	ref_4037_fdr	20	17	22	15	16	17	28	17	27	13
GTAGAGGTGAACACTT	alt_4037_fdr	16	17	9	14	15	17	29	9	12	7
GTTCACGGTCGCGTTA	alt_4037_fdr	25	33	33	19	32	33	25	18	39	22
TTGCGTCTTTCCGCAC	alt_4037_fdr	17	14	15	13	25	14	15	17	29	15
TATTGCGGTATAACTG	alt_4037_fdr	5	6	14	8	3	5	8	10	3	6
TATATATGCCAAGCGT	alt_4037_fdr	0	0	0	0	0	0	1	0	0	0
GATATGGAGCAGTCCG	alt_4037_fdr	49	77	59	45	49	62	49	38	74	47
GCGTCGGTTCTATGTG	alt_4037_fdr	21	40	34	20	38	31	38	26	46	15
TGACCCTGACGTATTT	alt_4037_fdr	0	3	4	6	10	6	2	4	3	4
TGCGCTCAAGTCTGAG	alt_4037_fdr	15	20	21	24	33	26	33	17	45	15
TGTTCCTGGCTTTGCG	alt_4037_fdr	20	24	21	20	29	12	17	13	27	10
GGGCGTTATGGCCCTT	alt_4037_fdr	55	74	73	62	69	49	51	62	74	61
CCCCATATTCCCTTCG	alt_4037_fdr	63	99	89	67	86	82	93	61	97	59
TGCTATCGGTCATTGT	alt_4037_fdr	44	52	46	44	51	42	52	29	50	36
TCGGGTTTAATCAATC	alt_4037_fdr	61	86	80	56	98	50	90	70	99	56
GACCGTGAACAATATT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTGCTCGTTCGGG	alt_4037_fdr	68	62	69	52	72	29	62	63	70	55
GGAATAAACCGCGTGA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGAATCCCCAAAC	alt_4037_fdr	39	24	37	27	31	31	22	21	33	33
ACTTGCCGGCTTCTAC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCTACGAAGTTTT	alt_4037_fdr	8	17	17	11	21	13	23	14	20	12
GCCTATTTTCATGCCT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGTACGTAGTTTG	alt_4037_fdr	4	6	4	5	6	8	6	6	14	8
GACTGCATTAACTGTT	alt_4037_fdr	67	91	65	63	83	63	94	69	107	51
TAAGCGAATCGTTTGC	alt_4037_fdr	18	28	31	16	38	16	30	20	27	25
GCTGCGTCTGTTCTTA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGGTGTTAGGGAT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATGGTCTGACGA	alt_4037_fdr	23	18	28	17	33	24	25	13	25	25
AAGGAAACAATAGCAC	alt_4037_fdr	123	152	163	114	172	117	146	104	162	129
TTCGGGTTTGTTGAAA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGTCACAAATATC	ref_4037_fdr	55	79	65	59	97	50	81	58	82	43
TATTCTTCTATGAGCT	alt_4037_fdr	27	29	29	18	31	21	31	17	27	19
GTTCAATTAAGTGAGC	ref_4037_fdr	18	28	12	26	24	28	18	19	23	22
TTATCGGGTAGCTATA	ref_4037_fdr	33	33	24	20	28	17	34	27	22	20
CCGTTTTGAGTACTGG	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCCTACGTAGACCTGA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GACCCATAGAGAGGTG	alt_4037_fdr	1	8	4	7	5	5	5	0	9	8
TTACCTGTTACCATGG	alt_4037_fdr	14	22	12	10	27	10	21	11	28	7
TAAAAGCTACCATTCT	alt_4037_fdr	17	16	14	15	9	14	12	13	13	10
TGCCAATCTACCACAT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CATTCGTGTTGCCTTG	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TCACCGGATGTCTAGA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTGCCTGTACGGC	alt_4037_fdr	9	24	24	14	12	23	27	19	29	8
TTTGCTGTTTATTCCT	alt_4037_fdr	31	33	32	29	42	40	44	28	46	41
GGTTCATCCGACACTC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGTTCTGGCGCAA	alt_4037_fdr	48	57	38	40	55	30	44	34	38	33
CACGCTTGCATTCAAA	alt_4037_fdr	6	30	12	9	24	12	20	15	22	12
GAAAGTTGGCCGGGCT	alt_4037_fdr	16	21	6	14	12	17	21	6	10	10
AGCGTGCGGCCAGGTA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TCGCATGTGGTTGTAT	alt_4037_fdr	15	37	31	15	32	9	33	14	36	12
ATACGTTCCTTCCCAG	alt_4037_fdr	49	79	58	46	74	42	55	49	74	39
TGTAACGCGCAGGGTT	alt_4037_fdr	25	33	34	23	39	29	30	25	31	36
ATAGGTGCAAGCTAGC	alt_4037_fdr	10	10	14	4	6	4	14	5	6	4
AGACGCCAATGACATT	alt_4037_fdr	3	10	5	4	7	11	11	6	8	3
GACCACCGCCCGGTAT	alt_4037_fdr	88	80	91	63	74	84	75	73	87	78
ACAGCTATATAGCGGT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTCGGGTGTAGCG	alt_4037_fdr	35	26	18	26	26	25	35	31	34	14
TCCAAATGATTTGTTG	alt_4037_fdr	43	45	51	48	46	47	63	37	57	42
CTAAATACCGAGGTTC	alt_4037_fdr	25	15	24	26	21	13	23	27	20	16
TCAGGTGTGTAGACTA	alt_4037_fdr	29	41	23	21	48	33	52	25	40	24
CCTAACCTGCCTTTAA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCACATGCATCACTCC	alt_4037_fdr	6	5	3	6	4	4	8	4	6	13
GGCGTACATTAATTCT	alt_4037_fdr	35	25	28	38	42	43	26	27	39	27
AGTCTCATCCCCCCCC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTACGCACTTTC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTCATTCGTCTGC	alt_4037_fdr	14	21	11	14	18	6	18	12	18	14
TTGGTAGTGTTCGTTG	alt_4037_fdr	8	13	19	17	14	7	17	12	16	11
TATGGTGAATTGTCAA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
ACGATTCCTTGGCCTG	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGTGCTTCTACGC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GTAAACATAGTTGCGT	alt_4037_fdr	42	78	72	57	52	53	76	45	56	51
ATAGGATTGCTCATCA	alt_4037_fdr	73	62	69	51	67	55	69	52	57	58
GCTTCGGGTTGTGAAT	alt_4037_fdr	16	23	21	21	20	18	26	16	33	12
CCTCGGTCACTTGCCC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CGGACTGATAGGTGAT	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TCTAGTCAAAAACTGC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCCCGCTCCACTG	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAGTTCAGTTCTG	alt_4037_fdr	11	9	8	12	14	7	8	12	5	10
GCGGAACGAACGAATA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CACGGGCGGCATTCCA	alt_4037_fdr	13	14	22	14	23	21	15	8	26	14
TCGACCTACACCCGCC	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCTATTTTAAGTC	alt_4037_fdr	6	12	12	15	10	8	11	7	10	5
GGGTGCTTTTTTCCTT	alt_4037_fdr	22	24	23	16	20	21	31	24	25	18
CGCTCGGCGGGCTCAC	alt_4037_fdr	12	12	18	10	21	11	16	14	27	20
TCCTAATAATCCTGTG	alt_4037_fdr	78	62	83	62	81	79	67	50	66	66
AACCTATCCATTCTTA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
TCACTTTTATACAACT	alt_4037_fdr	74	69	75	75	79	59	108	63	118	64
TAGAGCTCACATTCTA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTCTACCTTGTTA	alt_4037_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGGTTCGTTTAT	alt_4037_fdr	2	9	2	4	8	4	6	2	4	2
TTAGAATCTTTCTTGA	alt_4037_fdr	26	30	28	22	21	17	36	28	21	26
TGCATACGCAATTTAG	alt_4037_fdr	14	21	15	20	19	22	15	21	30	10
GCTGCCAGCAGAAGTA	ref_4037_fdr	2	7	8	7	3	8	6	9	5	13
CCCCTTTGGTTAACGG	ref_5934_new	5	76	10	11	93	12	82	4	64	6
ATTACCTGGTATTGTT	ref_5934_new	90	106	126	97	102	85	96	96	100	78
CCGTACTTTTGGTACA	ref_5934_new	42	48	57	44	49	61	35	47	42	40
TCTCTCCTGTCCGATG	ref_5934_new	10	10	20	21	9	13	11	20	14	13
ATTGCGAAGCATGTAG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
GTGATCCATATCACGC	ref_5934_new	21	12	14	18	12	12	15	15	14	20
TAATGCATGCATCTTC	ref_5934_new	47	19	54	32	24	53	20	39	17	55
TTCTGCTTGAATACAC	ref_5934_new	15	13	16	8	12	16	11	14	19	16
CTGGTATCGCGTCTAT	ref_5934_new	1	1	5	4	0	2	2	5	4	1
CGGGGAGTTTCTACGT	ref_5934_new	90	42	108	105	52	86	55	66	81	67
TTAGTGGACAATGATT	ref_5934_new	111	63	152	94	63	83	70	105	68	92
CTCTATTACCTATATG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
GATGACTCAATTTACA	ref_5934_new	26	18	32	19	14	24	11	26	16	27
TAAACTTTGTTGCATG	ref_5934_new	5	6	8	7	5	4	6	7	5	1
TAAAGCCTTATTTCGG	ref_5934_new	15	23	34	23	13	20	20	24	15	16
ATGCACCTTGTGACGA	ref_5934_new	160	100	172	174	107	153	106	151	114	150
GAGAATCGTTCTCTCG	ref_5934_new	14	11	18	11	8	8	14	15	11	15
TTTTGGTGTGGATGTA	ref_5934_new	17	14	13	10	14	21	7	12	17	10
AAGGTATGTGCGTTGC	ref_5934_new	23	19	26	24	28	27	13	24	34	15
TTTCGTCTAGGTCTCA	ref_5934_new	119	76	148	118	77	112	87	96	103	111
CTCTGTTATATTTTGC	ref_5934_new	122	74	127	92	69	89	59	96	54	85
GAGGTTTCGTCTGGAT	ref_5934_new	69	38	68	62	37	61	54	61	53	61
CCCGAATGCAAATCTG	ref_5934_new	30	15	40	28	29	14	27	33	30	18
AGGGGTTTTCTTGGGA	ref_5934_new	63	25	75	56	39	32	39	50	34	36
TAATAACATGTCGCGT	ref_5934_new	80	28	88	64	37	47	43	63	34	48
ACCCAGTAAATGGCAG	ref_5934_new	58	55	78	72	49	53	33	69	65	74
TTAGCCGTCTGTTAAA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
CTACAACTATTTCAGG	ref_5934_new	88	64	92	92	71	97	56	89	69	99
GTACGGAACGGGGATT	ref_5934_new	0	0	0	0	0	0	0	0	0	0
AGGCGGGTAGTGAATA	ref_5934_new	78	44	94	94	40	71	51	82	61	61
CGCCCTGTAGTGTTCC	ref_5934_new	12	12	10	7	12	8	15	9	15	4
CTCGAATCAAATGACA	ref_5934_new	6	2	3	2	0	3	1	4	1	8
TAGTATACCTCATAAA	ref_5934_new	27	13	37	28	27	28	17	22	30	21
TGTTTCACCTGCAATT	ref_5934_new	68	50	65	65	40	70	55	60	54	60
GACTCCCAGTCCCACC	ref_5934_new	0	0	0	0	0	0	0	0	0	0
AGGCACGGCCTGGTGT	ref_5934_new	6	0	14	12	1	7	4	7	1	3
AACTGATTACATCCAC	ref_5934_new	7	6	11	6	6	4	4	13	4	7
GAGGCTAATGGCATGT	ref_5934_new	10	5	12	13	4	13	3	12	5	15
GCCGGTCGGGGCCTTC	ref_5934_new	3	12	0	2	12	2	10	1	10	2
CGCGGTGTTACCTTCC	ref_5934_new	0	0	0	0	0	0	0	0	0	0
ATGGCGCGCTATATTC	ref_5934_new	94	59	89	81	41	102	77	70	71	85
GAACTGCTTGCGGCAA	ref_5934_new	53	45	64	64	31	42	26	32	29	50
GTACCCTCAGATTGAG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TGGGTTTTGACCTGCT	ref_5934_new	69	51	70	70	42	61	43	62	52	56
TTTACGAGTGCGAGAA	ref_5934_new	46	38	73	60	39	55	49	63	38	60
CATCCTGACAATATTT	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TTACTTATTAACTGTT	ref_5934_new	180	117	201	169	114	138	116	167	124	172
GTAGTAATGGTTAGTC	ref_5934_new	23	10	20	19	9	23	12	10	12	18
GGAAAATCCGGTTAAC	ref_5934_new	7	4	16	8	2	10	7	6	7	5
TTTCTCAAGATAATTG	ref_5934_new	21	15	27	15	7	13	8	15	3	12
TTAGACAATCCCGCTA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TTAGGGACTGTATCGG	ref_5934_new	98	106	117	109	92	96	91	101	98	83
TCATTTTGCTTAGATC	ref_5934_new	49	42	55	53	35	51	43	54	39	50
GCTCCTATTCTTTCCA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
CGATACAGACCATGTC	ref_5934_new	50	28	61	59	45	60	41	37	60	63
AGTAAACAGCAGCCTC	ref_5934_new	32	16	24	51	26	26	22	27	28	46
AGTACACCGGGGTTTG	ref_5934_new	156	115	189	179	119	142	124	160	105	118
TATATTTTGTATTTGC	ref_5934_new	15	6	11	17	10	10	23	19	8	13
TTTACCAGTGATGTTA	ref_5934_new	45	24	93	59	47	61	30	49	40	52
GCATCTCGTGGGAGTT	ref_5934_new	0	0	0	0	0	0	0	0	0	0
AATTGTACATGTGGTC	ref_5934_new	17	7	31	21	22	25	16	24	16	25
AGTCCTCTAGTATCTG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
GTGAATGTTATTCATA	ref_5934_new	35	20	47	42	32	41	32	31	16	44
AGAAAACTCATGAAGC	ref_5934_new	40	22	54	39	22	40	32	30	28	37
CCCACGCCCAGATTTC	ref_5934_new	79	62	81	97	65	83	48	71	67	87
AGCACAGAGGTAACCG	ref_5934_new	124	89	181	132	100	146	82	120	118	122
CTCCACTTTGCGTCAT	ref_5934_new	45	18	48	38	25	35	25	32	38	36
CATTTGGCTACCTCAA	ref_5934_new	33	19	39	32	28	41	28	36	26	30
CGGCTAGGAGCTTCTA	ref_5934_new	81	45	105	109	47	93	51	71	58	50
ATAAGTGCCTAGTTTC	ref_5934_new	61	28	55	48	33	37	27	43	36	42
TTCGAGCTCGCCCACA	ref_5934_new	3	0	2	3	2	5	1	3	2	2
ATCCCGGTCTTGCCCC	ref_5934_new	30	15	15	18	18	16	15	14	27	21
TACTACATAGCGCTGC	ref_5934_new	1	5	1	1	5	0	4	4	2	1
GAGTTCCTGACACTTT	ref_5934_new	0	0	0	0	0	0	0	0	0	0
CTTGCTAGACATAAGG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
ATGTCTAGAGTGCCGG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TTCATTAGGTCCTACG	ref_5934_new	37	32	47	44	36	35	26	40	25	32
GCAATCTACTATGGAC	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TGAATTGCGGTGCACC	ref_5934_new	0	0	0	0	0	0	0	0	0	0
CGCTTCACTGATCGCA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TGCTATTTAGCGAGCA	ref_5934_new	29	23	45	29	23	29	60	36	34	30
GTCCTGTGCCGGCCAG	ref_5934_new	61	30	65	56	30	45	48	58	65	43
TCGTTCATGGACTTAA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
CTGGTACCGGTTACGA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
CTTGTATGTCTAGAAA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TACGTAACGTCGCTGT	ref_5934_new	41	40	68	53	27	58	48	60	37	44
TTTGGTTGCGTTTGGT	ref_5934_new	12	12	25	11	7	8	15	8	6	6
TTAAATACAATTGCTA	ref_5934_new	60	52	75	52	30	53	63	27	41	50
ACACCGCTATCTCGTA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TCTCAGCGGTCGAGTT	ref_5934_new	48	38	44	53	35	38	31	39	48	47
GTTCCACACAAGAGCC	ref_5934_new	50	26	46	52	50	46	49	52	42	43
CATCGCGTAGACCATG	ref_5934_new	44	15	49	59	31	32	32	46	17	34
GACCGTCGTACTCGTG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
GTATGTTCCGTTTACG	ref_5934_new	229	166	281	236	144	206	179	218	160	198
AGGCACTTCAGTGCCG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TGTCGCTGTTGTCTCA	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TGGCCGGCCGTTTACA	ref_5934_new	52	98	55	59	91	39	104	29	124	22
TCTCCGTTTAGGCGGG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
GCTAAGCCCGTGCGTG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
GTATCAGATTGGTTTT	ref_5934_new	41	21	54	39	40	42	30	35	37	38
CTTAGAATATTCGTAA	ref_5934_new	37	19	36	24	19	30	29	27	22	16
TAGGCATTTTAACCGT	ref_5934_new	0	0	0	0	0	0	0	0	0	0
ATCCCGCGTCGATAGA	ref_5934_new	3	20	3	5	13	2	14	2	17	4
CTGAGTTCTCTGCGCA	ref_5934_new	20	10	37	16	11	23	14	24	17	10
TCTCTAAAAGCGGGCC	ref_5934_new	16	3	13	6	8	7	11	16	4	10
TTTAAGTGGGGTTTCG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TGGGCTCCCAGCGGCC	ref_5934_new	88	50	88	86	54	70	45	75	62	60
CAAAAAGATGAGCTGT	ref_5934_new	166	125	223	173	162	205	132	208	146	178
CTTTCCGTCGGATTTT	ref_5934_new	58	39	61	54	31	45	27	40	35	39
AAAGAGATAAGACGCG	ref_5934_new	29	11	28	33	14	24	17	28	7	21
AGAACTTTTCATCCGC	ref_5934_new	17	10	18	21	11	16	8	11	6	20
ATGCAAATTCTGTTCG	ref_5934_new	28	13	28	20	18	26	15	15	21	27
CCCTCACGGGTTGCCG	ref_5934_new	87	81	88	79	68	86	74	83	89	89
CCGAAAGTTCTTTTTG	ref_5934_new	5	4	6	7	6	7	17	9	4	9
ATTGGGACCTGCAAAT	ref_5934_new	1	1	0	2	2	0	3	4	4	1
GCTCTTGGTGTGCAGG	ref_5934_new	0	0	0	0	0	0	0	0	0	0
TCTTGCTTCATATGGT	alt_5693_new	23	10	30	29	6	19	16	16	8	10
AACCCCCCGCGCACGA	alt_5693_new	5	5	5	5	2	6	4	6	1	0
CAGTGGTTTTCTTCCA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TAGACAGGGGGGTCAA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTTCTCCCAATGCGTA	alt_5693_new	169	77	162	171	51	163	66	130	68	144
ACAGGATCTTCTCAAC	alt_5693_new	79	24	88	74	34	51	23	53	29	52
TCATTTAAGCCTCGCG	alt_5693_new	29	14	32	33	12	37	14	29	18	24
CTAGGCGTGACTAAGC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CTTACACTTGATAAGT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TCATTTACTCCGGCAT	alt_5693_new	66	18	59	62	23	64	28	47	26	48
AGGTCCCAAGGTCCTT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CACGGCCTGTAGTTTT	alt_5693_new	35	10	53	35	14	45	13	32	12	38
CGAATTTGTTTGACGA	alt_5693_new	74	31	104	91	36	82	41	121	45	101
ACCCTCATCGGCGATT	ref_5693_new	4	1	1	1	0	2	1	1	1	1
TTTTGACTGCTAACTC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTATTCCGCACGCACA	alt_5693_new	96	40	129	131	36	113	51	109	34	107
GTTTTGGGATATACGA	alt_5693_new	40	8	42	48	25	32	19	40	17	32
TCGGTCTGTCCGACTG	alt_5693_new	254	90	323	272	101	238	127	249	141	205
TTTTTGTCCTTGGACC	alt_5693_new	32	11	43	40	11	39	20	35	11	37
CTAAATTATAGGTATG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CTAATTTCGTGTGATT	alt_5693_new	126	27	142	110	43	101	33	92	54	110
TTGGGGTTGTCACTGT	alt_5693_new	67	38	109	83	31	83	36	87	38	67
TTTGCAGTATAGCTAT	alt_5693_new	31	14	32	45	18	32	10	20	13	20
GTTGACCTTCAACTTA	alt_5693_new	364	155	384	345	146	291	162	290	196	346
TGCCTCTTAGCATTTG	ref_5693_new	126	62	126	133	52	127	68	93	54	90
AGCGACAGTGCTCCCA	alt_5693_new	163	43	169	145	59	148	70	141	58	154
TGGGCTGCCAGTGGGT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
AGCTAAACGGTTAGTA	alt_5693_new	9	6	31	20	5	12	3	14	4	15
GATTCAACACCTGTGG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GCTGTCCCTCTCTCGC	alt_5693_new	58	30	49	50	35	44	30	54	37	56
TGGGCGATTAGGTTCG	alt_5693_new	300	142	399	339	142	315	139	312	162	257
TCGTCAACGGATGCAT	alt_5693_new	265	147	336	286	82	231	123	224	116	213
CACTTGTGCAGCGTCA	alt_5693_new	20	13	23	31	17	27	5	22	16	18
ATGGGCCGTTGCGTCG	alt_5693_new	19	9	23	28	6	24	8	23	10	16
GGGTTCCGGTAGTTCT	alt_5693_new	33	19	52	50	11	47	10	43	21	38
AGTCATTTGCCTGGTT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TCGACCACATAGCTTG	alt_5693_new	169	63	216	198	61	173	84	142	76	180
AAAACCTTCAAGACGT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CCTTGGTCCCCGATTT	alt_5693_new	3	5	5	7	4	4	0	6	1	7
AGAGTAAGGATTGCGG	alt_5693_new	283	114	347	346	109	331	142	302	122	269
CACAATCTTTATCGGC	alt_5693_new	232	109	302	239	106	252	121	227	100	163
GTTGCTCGAGTCACAC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CGGACCATGAACTTCC	alt_5693_new	520	181	651	524	215	486	192	497	245	457
CGGCCTCTACGGGCTC	alt_5693_new	17	8	27	25	5	17	18	28	7	25
GCTTCATACCCTTCAC	alt_5693_new	13	7	9	9	3	10	5	7	5	12
AGCCTCACAATAAGGT	alt_5693_new	70	38	117	100	39	74	43	88	30	70
CCTTATTCGGTCAAGC	alt_5693_new	27	14	26	34	15	28	16	23	17	18
TAGAGGCGAATCATAC	alt_5693_new	33	13	42	30	8	19	9	17	7	26
GGTGGCGGTGGACGGC	alt_5693_new	44	17	55	33	18	47	10	38	17	35
TGGTTATCGAGCCACA	alt_5693_new	29	9	24	24	10	21	16	30	29	36
GAGTATTGCCATGTAG	alt_5693_new	288	130	394	329	135	301	133	328	150	269
ATTGGACGTTCGTTTG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GATCGTTCCTGAATCT	alt_5693_new	78	26	100	81	29	69	32	82	30	66
GCCCCATCGGAAACCA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTCCCTGTGCTCAATT	alt_5693_new	90	38	106	94	45	93	30	73	43	81
CATTCTTGGATGTGGG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
ATGTTGTATGTACATG	alt_5693_new	229	108	338	311	122	247	108	252	126	227
AGTAGAGGGCGGGCAG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CCGCCAGCCGTTCCAT	alt_5693_new	37	22	50	37	23	38	12	50	27	49
TATGGCCCCCAATTCT	alt_5693_new	12	3	39	33	4	32	13	33	4	29
ACTTGCGATATAGAAG	alt_5693_new	109	41	134	94	42	106	53	70	46	89
CAGAACTTTCATTTGT	alt_5693_new	34	18	34	43	12	30	10	28	15	25
TCCCCATACTGCGAGT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TGCACGTGAACCTAGC	alt_5693_new	138	84	155	124	95	84	64	131	87	122
GCCTCGCCTCAGGTTC	alt_5693_new	40	30	41	45	23	39	42	42	26	36
TATTCAGTCGGTAAAG	alt_5693_new	58	34	86	83	30	80	33	61	36	42
GTGTAAGGTTTCCCAG	alt_5693_new	96	35	78	78	39	81	42	87	37	73
TTTTAACCTGGTCCGT	alt_5693_new	71	28	71	56	29	59	25	47	22	41
CTTTAAGGCGTTTGTC	alt_5693_new	74	32	103	90	26	68	36	67	59	69
GCTCTCGCCCAGATTA	alt_5693_new	67	33	107	84	33	67	26	74	32	69
TTTGTATCTTTTTAAT	alt_5693_new	30	17	41	30	13	30	18	24	10	40
CGGTCGCGAGCCTTGC	alt_5693_new	21	62	30	28	40	15	60	22	66	20
GCGAACAATCCGTTGC	alt_5693_new	119	57	147	124	50	118	58	107	47	119
AACTGACGTTATATCG	alt_5693_new	5	2	9	8	6	7	4	5	2	1
CCAATGCCTTCTACTT	alt_5693_new	370	128	533	399	151	358	134	349	162	325
TGTCTAGATCGAATCA	alt_5693_new	401	156	493	398	172	382	178	398	184	344
TGCAACATTACAATGT	alt_5693_new	92	25	128	96	42	99	54	108	48	78
CCGCGTACAGTTTGCT	alt_5693_new	43	18	45	57	25	39	21	44	31	37
AGTAGTCAAAAGCTCT	alt_5693_new	32	18	37	40	15	27	9	21	7	31
CGATATATCGGCGGAC	alt_5693_new	82	41	101	95	55	53	50	84	49	70
TTTCATGCCGCTTTGA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
AGCCGTGATTATATAT	alt_5693_new	12	7	30	13	11	10	7	23	8	8
AGTCCTAAGGGCCCTC	alt_5693_new	22	6	18	20	19	26	14	18	10	19
TTCGGGTGTTTAGGGA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TCCAGTTAGGGTGGAA	alt_5693_new	26	12	49	39	21	39	23	33	20	25
AGAATGCCATAACATT	alt_5693_new	168	97	250	195	67	202	84	161	63	162
AATCCAGATCTTTAGG	alt_5693_new	95	46	126	97	42	79	40	110	46	72
ATAATACGTTTGGATG	alt_5693_new	1	1	5	4	3	3	0	3	2	4
ACCGGAGAGCTATTGT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTAAAGGTTGCTGGGG	alt_5693_new	44	18	48	42	25	54	20	36	25	30
GACGCGGCTTACTGCT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
AATCGTCTTGGTAGAC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CGTTCGCATAATATTC	alt_5693_new	54	23	60	69	19	46	24	67	25	54
TGGCAAGCTTTCGCGG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GGAGGATAATCTTCCC	alt_5693_new	95	32	95	82	20	64	29	81	29	65
GTTGTCTGTATGGGAG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTGTGATAATCAGAGT	alt_5693_new	185	78	231	192	75	168	80	188	86	149
ATTTATTCATTACGCC	alt_5693_new	43	20	68	58	19	35	24	52	19	48
CGTACACATGCACCCT	alt_5693_new	28	16	27	28	11	23	16	23	8	23
GTCACGTTCGCATCCC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TGCTCGTGTGTTCAAT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CCATGGCAATAAGTCT	alt_5693_new	121	76	181	148	74	140	72	150	81	115
TGTTGACCACAAAGTG	alt_5693_new	28	10	35	25	15	33	16	37	16	28
TGTCGTCCCATGTGCC	alt_5693_new	54	25	68	58	18	69	23	60	20	52
TATTGCCGTTTTCGAA	alt_5693_new	211	108	274	229	81	227	105	202	123	211
TCACTCGGTGGCTCAA	alt_5693_new	299	136	427	344	128	309	149	328	154	276
ACCCGCAATGGTAGAG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTTATTGATGAAGGGC	alt_5693_new	175	76	222	162	55	149	53	153	61	142
TTTGTATATTCTCGGG	alt_5693_new	75	32	99	88	32	82	37	80	29	78
TTGTCACCTATAGACC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GCCTTTAATGGATCCT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
AATCGTAAGTTCTCGC	alt_5693_new	19	17	25	20	14	12	12	15	11	16
TGAGGGCGCGTCCCTG	alt_5693_new	128	55	209	168	49	150	51	133	67	126
CTCCATACGCATCGTT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
AGGTTCCCTACTGCTA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TATCTTCACTTGGGCA	alt_5693_new	48	17	71	65	22	47	18	54	21	45
CATTGTCACCGAGGAG	alt_5693_new	9	2	12	5	4	11	2	10	7	10
TTTTTGGACACCAGAA	alt_5693_new	37	18	57	50	15	38	31	34	16	31
ATTAGTCATTATGCCT	alt_5693_new	82	43	100	75	46	78	39	87	29	75
AAAGGGTTGGCGCAAG	alt_5693_new	203	102	242	229	92	214	84	232	87	187
AAGTCCGCTCGACGCC	alt_5693_new	4	21	12	15	11	17	19	10	17	11
TCTGCGCCATATTCAG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GTGTGGAATCGCCTTG	alt_5693_new	199	80	250	220	91	195	93	170	104	201
GCCGGGTTTACATCTG	alt_5693_new	12	7	8	17	10	5	2	9	7	8
ACCATATGTATGGTGC	alt_5693_new	3	4	3	1	1	0	0	2	0	0
GTGTAGGAACGGCGTA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
ATGTTTTTTCGTAGAC	alt_5693_new	196	93	241	211	98	177	102	178	93	154
TGCGCTCAACTCATAT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GGCTTACAGATTTCCA	alt_5693_new	243	74	264	234	76	186	84	179	82	170
CCTTCAACTATATCTC	alt_5693_new	125	51	176	152	64	115	54	103	50	112
TGGGTGATCATTACTT	alt_5693_new	129	56	183	144	61	119	40	110	46	97
CCTTGTCACGTTCCGC	alt_5693_new	2	5	2	6	5	4	5	8	5	4
ACCGGTCATCTGGTCA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
ACAAAGCGGAGTGTCA	alt_5693_new	96	34	108	116	35	84	44	86	39	80
TCCACATTAGGATTCG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CATACTGGTTAGTAAT	alt_5693_new	12	6	20	20	7	14	7	12	7	17
CTTGCCGTACGTGTTC	alt_5693_new	146	66	201	196	61	165	66	189	70	171
TTGCTCATGACAACTC	alt_5693_new	50	29	50	58	18	47	17	44	24	48
AATGTTCCCTCTTGAC	alt_5693_new	20	10	26	24	17	28	15	25	14	22
AACCAGAGCGTATGCC	alt_5693_new	20	12	38	29	16	24	26	32	17	18
GTCTATGTTAGGCTAA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TGCCCTGTATATCAGG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TCAGCACAGGAGTTAG	alt_5693_new	19	18	19	27	13	13	5	16	6	24
GAAAACTCCCCCGCTA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTCCACTACGAGGGGT	alt_5693_new	81	25	85	87	27	67	31	96	32	54
AGTCATTTGTTCTCGC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GACTATCAACCCCATG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
CCTCGTGACGGTTGCT	alt_5693_new	13	7	17	15	5	11	7	10	7	10
AATGTTTTCACATGTG	alt_5693_new	17	4	23	13	2	23	7	15	8	14
TCACCGGTATTCACTT	alt_5693_new	42	35	50	47	33	39	23	42	39	33
GCCTTTAGGATATTTT	alt_5693_new	14	6	21	20	11	21	7	17	6	13
TTGGGCCTGCAATATA	alt_5693_new	51	25	86	46	23	64	21	44	31	42
GCCGTCATCCCTTGAA	alt_5693_new	9	9	24	18	13	16	4	17	6	23
ACTCCAGCGGCTTCAG	alt_5693_new	108	215	166	126	230	123	236	150	234	101
ATTCTACCGTATCGCC	alt_5693_new	1046	557	1204	1064	619	909	649	992	622	926
CCCCTCTCAGGCACCA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TGGCACTCGATGTGTT	alt_5693_new	69	19	63	70	25	49	18	56	35	56
TCAGTGTGTTACGGCA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TCGGCTTGAACTTCTG	alt_5693_new	100	32	104	88	36	89	32	108	41	96
TTAAAAACTTAGCAGA	alt_5693_new	81	34	83	87	37	54	30	69	28	73
CAAAGAAGAAATGTTG	alt_5693_new	190	55	239	202	66	164	65	186	58	154
TCAGATTAAACTTTAG	alt_5693_new	141	41	128	121	58	97	54	107	57	95
CTTAGTGAAGAGCCGT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GTTACCAGATGGCGTG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
ACCGCAACGTTTGTAA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
GTTACAGTCTCATGGT	alt_5693_new	749	329	929	852	363	756	337	730	363	697
TATCTATACTGCTGGT	alt_5693_new	78	42	122	125	37	106	45	108	39	95
ATTGGCTGCGGCTTAT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
ACAATCCAGCACTTCA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GATATGCAGGTTCCTG	alt_5693_new	109	67	160	120	57	100	60	114	52	99
GGTCTCACGGGTTAGC	alt_5693_new	41	20	23	29	11	20	13	22	20	28
AGTGACTGTCGCTGCT	alt_5693_new	62	17	50	55	18	44	13	33	16	40
CAGTGACTTTTGTCGC	alt_5693_new	35	13	40	29	15	33	16	42	13	40
TGCGTAAAACTCTTGT	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TTCGCATGCCTCGAGG	alt_5693_new	10	9	10	4	2	10	5	7	6	5
ACCAAATCGATATCCA	alt_5693_new	0	0	0	0	0	0	0	0	0	0
TCCTTCTCATTTGCAT	alt_5693_new	206	80	219	195	89	201	76	188	104	148
TGTGGTCTCACCTTAG	alt_5693_new	162	76	221	173	64	148	77	159	81	163
TCCATGTCGGGATTCT	alt_5693_new	18	11	29	21	19	25	18	22	5	22
GAACCCAGGAGAACTT	alt_5693_new	20	5	31	20	8	19	6	8	10	20
TTGCTCATATTCTCGT	alt_5693_new	99	51	170	126	54	108	51	110	70	123
CTGGTATCGGTAGGTC	alt_5693_new	123	39	120	111	36	97	53	111	56	94
TGAATGAACTGCATTA	alt_5693_new	165	60	169	136	47	138	56	137	64	121
GTTAGACAACATTAGC	alt_5693_new	0	0	0	0	0	0	0	0	0	0
AAATCACCCACCGAAG	alt_5693_new	17	11	12	14	7	10	8	11	5	17
GAGTTGTGGCGATTTA	alt_5693_new	45	20	51	37	18	42	13	43	21	30
GAGACCTTCCAGTTAG	alt_5693_new	295	141	376	361	120	293	130	266	140	296
CCCATGTCTAGAGGCG	alt_5693_new	0	0	0	0	0	0	0	0	0	0
ACTACGCTCGCCATAC	alt_5693_new	62	36	62	72	37	72	31	54	49	44
TAAGACGCATCTGCGG	alt_5693_new	44	12	56	53	25	37	15	53	19	43
CTTAGAGGTGAGTTTC	alt_5693_new	16	7	24	21	9	22	8	17	6	13
ATGTCGCATTTCGGTT	alt_5693_new	62	20	69	77	18	70	22	56	26	52
TGCGGCGGGGGCCACA	alt_5693_new	154	82	205	177	78	141	84	181	62	140
TTGTGTTACTAGCTTA	alt_1587_fdr	39	31	57	50	44	33	27	28	35	51
GCTTCAACTGCCTCGA	alt_1587_fdr	66	34	79	67	38	65	38	56	28	42
AGAATATTAATGTTCT	alt_1587_fdr	19	20	47	30	10	37	15	20	23	18
GATCCTTCCACGCGAG	alt_1587_fdr	21	13	18	19	16	22	8	13	13	13
AAGAGCCATAATTCTG	alt_1587_fdr	86	42	63	59	51	75	34	64	32	71
TATAAACCTTCCTCCC	alt_1587_fdr	145	93	178	159	102	131	106	150	99	120
TCCTTGGTTATTGTCC	alt_1587_fdr	36	30	70	45	33	43	26	35	34	37
GCTGCTTTTCAGCATC	alt_1587_fdr	22	32	36	45	24	34	16	32	27	26
TAAATGGGATCATATA	alt_1587_fdr	119	73	137	119	65	112	63	118	62	71
TAGGCCCTTGTTTCAC	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
GCATCCGGCGCGCTCT	alt_1587_fdr	89	82	154	122	96	94	81	115	86	100
AAATGCCTTAATCGTC	alt_1587_fdr	37	26	47	44	28	27	16	37	27	27
TGGGACGTCTCCTCGA	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
ATATTTAACATGCTCG	alt_1587_fdr	37	24	55	31	22	43	26	38	16	36
CGGATGAGGTACCCTG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CGCACGAGCATGTTAT	alt_1587_fdr	120	68	154	144	73	99	85	126	75	107
TGTTCTAAGTTGGTCT	alt_1587_fdr	19	13	19	28	16	18	11	13	17	21
CAATGCCGAAATCTTG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CGTTAATGACAAATGT	alt_1587_fdr	54	33	47	67	36	52	45	40	49	46
TGACTGCTGCACCGCC	alt_1587_fdr	32	30	42	42	18	35	11	38	20	28
CCACTGCACAGTGTTC	alt_1587_fdr	35	37	80	70	49	50	48	58	70	47
GTTTTTGGGCTTCGTT	ref_2515_fdr	125	69	126	98	72	104	65	112	74	93
CCTCTATCCGGTTCCC	alt_1587_fdr	36	24	66	75	45	42	32	53	40	47
GACGAAGGTCTGCAGC	alt_1587_fdr	8	7	13	13	4	11	7	6	5	11
CTCCGGGATAATAATC	alt_1587_fdr	51	33	82	46	36	38	34	38	29	48
CCGCCTGTCTGCAGCT	alt_1587_fdr	34	44	38	49	29	27	55	29	46	22
CCGGCCGACGATTCGA	alt_1587_fdr	99	112	116	95	108	87	114	99	114	74
GTGTAGACTCATTGTG	alt_1587_fdr	1	3	3	4	1	2	2	1	4	2
AAGGGTTTGTAGGGTT	alt_1587_fdr	6	8	19	19	11	13	13	15	3	16
GTGTATGGTGCAGGAA	alt_1587_fdr	141	88	206	166	101	140	101	173	102	137
CCGTTGTCTGCCTTGA	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TATCCTGCCAAGCTGG	alt_1587_fdr	62	68	101	86	62	60	61	65	67	74
TTACAGTGGTTATTCG	alt_1587_fdr	146	70	156	131	81	97	72	137	88	129
ATACCTGGCGGTCATT	alt_1587_fdr	68	38	79	48	44	48	42	38	30	48
TATCAATCATCTTAAT	alt_1587_fdr	161	67	147	123	82	133	84	142	78	123
GATGCGTGTACATAGT	alt_1587_fdr	52	36	54	47	45	52	31	49	52	42
TTCCTCTATTCAACGG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TCTAAATAGGCATAGA	alt_1587_fdr	47	15	45	37	22	52	25	26	17	35
GTTGACGTAGTTTAAT	alt_1587_fdr	2	8	1	2	8	4	1	4	9	2
GTCTAATTGGCCTGCC	alt_1587_fdr	109	59	134	117	71	99	69	89	64	93
AAACTTTAATAAACTC	alt_1587_fdr	48	28	54	65	23	44	26	48	36	46
GCACACACCCGAATCT	alt_1587_fdr	26	22	21	24	23	15	28	15	28	13
CTCTTACCATGGGTTT	alt_1587_fdr	6	4	3	2	2	3	2	3	2	5
CGCAGTGAAGTGGGAA	alt_1587_fdr	52	23	52	64	23	49	26	54	36	45
AGTCTTTCACAGTAAG	alt_1587_fdr	65	34	66	52	30	62	35	46	39	48
ATTATGGATGATAACT	alt_1587_fdr	42	37	69	46	27	34	32	30	41	55
TTGTTTCTTTACGGGG	alt_1587_fdr	54	38	68	54	36	50	44	54	47	55
AACCAGGACCGGCCAG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCCCAGTGTTCAC	alt_1587_fdr	27	30	50	45	46	34	37	34	30	40
TCACGTCCGTCTGTCA	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CTATTAGAGCCGGTGG	alt_1587_fdr	36	19	45	54	31	42	26	36	30	40
TGCAAAGATAGTTCGT	alt_1587_fdr	78	59	103	77	33	81	49	63	58	73
ATCATTCTTTGAGTTT	alt_1587_fdr	62	42	72	57	51	45	26	46	48	58
CTGCTAGGGTTCAATT	alt_1587_fdr	414	233	491	420	230	397	224	354	249	338
TGCGCATACAATGCCC	alt_1587_fdr	48	28	70	58	20	47	28	32	34	54
TCATTGTAGCAAGCTC	alt_1587_fdr	95	36	115	100	47	88	57	79	62	68
TCCCCCGGTGCATCTG	alt_1587_fdr	16	12	8	9	6	4	6	9	7	7
TGAAGGTTGACTTGGT	alt_1587_fdr	112	74	150	123	83	138	74	118	79	108
GATCGATATCGTTCCC	alt_1587_fdr	21	21	18	19	12	14	11	20	8	13
CTATCGAATGGTTACT	alt_1587_fdr	8	5	18	12	3	11	4	8	8	15
CCTTCGTATTGAGCTA	alt_1587_fdr	25	20	46	41	36	39	42	41	28	32
GTGATATACGACAGGT	alt_1587_fdr	53	31	72	55	20	52	28	38	31	41
TACCCCAGATCACAGG	alt_1587_fdr	8	2	8	4	2	6	3	8	6	4
CCTTTTTAGCTTTAGA	alt_1587_fdr	46	35	54	50	45	45	35	34	31	30
CCCTACCGGGTGATTT	alt_1587_fdr	66	53	91	70	65	79	47	80	45	55
CTATGCGATCGGCGTC	alt_1587_fdr	18	7	18	16	8	13	5	11	6	11
TACTGATATTCTCCCG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTTTATAATATAT	alt_1587_fdr	63	43	66	67	32	46	39	51	48	55
GTTGGTGCATAGGGCC	alt_1587_fdr	35	25	45	24	14	27	27	22	17	29
CTGCTATTGGGTACCC	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGGGCTATCTGTT	alt_1587_fdr	134	83	153	140	94	137	78	102	101	145
CTTGGTGTGGAATTCA	alt_1587_fdr	131	95	196	169	101	151	110	159	137	151
TCTTTCTTCTCTATCA	alt_1587_fdr	77	34	60	61	35	42	44	48	28	50
TCCGTTCGTTAAGAGG	alt_1587_fdr	93	55	95	90	44	51	46	64	65	65
CGTGGGATAGACGTTC	alt_1587_fdr	35	30	50	49	24	31	18	35	32	26
GGCCACGACAACTTTA	alt_1587_fdr	18	12	19	16	14	18	5	10	9	20
TAGTGTAGTTGGCACT	alt_1587_fdr	121	114	150	138	134	112	96	138	120	105
TCACGCCCGCCTTTGG	alt_1587_fdr	223	166	259	247	168	240	165	231	187	204
TTTAATTGTTTCAACA	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TTGAAGTAAGAGTCTA	alt_1587_fdr	37	28	53	31	21	25	21	37	33	32
ACGCTAGTCTGCTTTG	alt_1587_fdr	108	84	149	112	72	116	90	113	88	104
ATTTCCTCGCCTTACC	alt_5707_new	2	9	6	4	11	2	14	1	10	4
TTTTACCGTGCTAGTC	alt_1587_fdr	13	13	6	5	12	8	6	4	10	1
CTTGATCCCGGCCTTT	alt_1587_fdr	1	4	3	7	0	6	1	4	5	4
CCACCTATGAGGTTCG	alt_1587_fdr	35	15	25	19	5	15	8	31	11	21
ACCATAACGATTTGCC	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
GGACTTAACGGAATGG	alt_1587_fdr	48	37	49	39	18	31	29	52	23	33
CAGTTTGCACCCTGCT	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
ACACCCATAGCGGATC	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TCCAACCCTGCCACGG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCAGACCGTACA	alt_1587_fdr	109	94	138	143	86	123	94	146	101	118
CAATCATTTAATGCCT	alt_1587_fdr	6	6	9	3	3	4	2	9	3	8
TTGGGTTAGGGGCTTG	alt_1587_fdr	76	35	100	63	36	71	43	78	61	71
GGGATTTTAGATTGGC	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CGCACTAAAAGCAGCA	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCAGGGTTCAATT	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTGGACTTTCCGA	alt_1587_fdr	54	23	65	50	23	62	29	39	37	43
CTAGTTCCTCTTGGTC	alt_1587_fdr	7	3	6	4	3	7	2	5	1	1
AATCCTGCCAAGCTGG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTGTTTTTGCTTG	alt_1587_fdr	140	75	166	137	66	121	48	123	91	142
TCGCTCGAGTTTTCCG	alt_1587_fdr	20	17	20	22	14	29	17	21	16	21
TCGGACGACTTTGTCG	alt_1587_fdr	170	97	238	221	87	177	91	172	117	168
CTGATTCCCTATCGCA	alt_1587_fdr	9	3	15	8	3	6	5	3	9	8
TACGACCGAACGTACT	alt_1587_fdr	49	27	31	51	29	38	36	41	21	40
GGATTGCATTGCCTCC	alt_1587_fdr	15	14	23	20	8	15	11	21	6	15
GCTCCGTGCTGTCCGT	alt_1587_fdr	49	16	37	45	24	39	26	39	25	41
GTACCTTTTTCATGAC	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
CCGATTTGTTCGCGGC	alt_1587_fdr	44	22	46	52	33	36	35	27	21	40
ATATTCCCGGGCATAC	alt_1587_fdr	38	22	47	34	16	36	27	45	38	40
CCTACTGTTTTTTGTT	alt_1587_fdr	49	34	86	61	35	53	38	61	43	40
TTTTTGAGTTACTGCG	alt_1587_fdr	74	67	96	74	35	70	52	72	51	49
GTCGAATCCTCGAGTG	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TAATATGCGGCGCCTG	alt_1587_fdr	30	13	28	16	10	33	18	21	17	16
CATGTAAGTCGTCCGT	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
GATTCCGCCGGAATAG	alt_1587_fdr	1	0	1	1	0	4	0	1	1	1
CTCTTCTTTAGGTGGC	alt_1587_fdr	8	6	5	11	8	11	3	9	7	4
TAAGTATATAATTGCC	alt_1587_fdr	599	336	775	630	362	584	383	626	428	489
CTTCGGCCCTATTGGC	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGCTTACCAGGGC	alt_1587_fdr	25	10	21	19	12	14	10	25	13	13
TGGTGGTCCGGGACAT	alt_1587_fdr	166	84	195	168	105	145	114	153	112	139
TTAGTCCTCCGCAACG	alt_1587_fdr	58	34	85	61	35	51	33	52	24	52
TCTTCACTCAAGATTC	alt_1587_fdr	51	32	64	60	37	45	34	46	35	54
TTTTGCTTGATGAGCT	alt_1587_fdr	241	136	276	243	129	235	128	234	139	220
TCTTCCGGCTTGATGT	alt_1587_fdr	98	67	127	135	78	114	51	104	63	109
CGGCCACTCCAATCTC	alt_1587_fdr	86	80	103	106	79	96	76	71	94	90
GTGTCAGCCCCTGGCT	alt_1587_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGTTTGTAACTGT	alt_1587_fdr	34	27	49	35	34	40	35	41	38	38
GTTCTCGGTAAAATAC	alt_1587_fdr	30	17	47	35	23	40	33	38	27	31
CTGGGAAATCTCGTGC	alt_1587_fdr	35	26	38	27	21	35	20	25	24	23
TTCCCTTTTGTGAGCC	ref_1093_fdr	38	49	33	33	56	45	41	32	55	26
GTGAAGGTCGGTCCGG	ref_1093_fdr	25	18	26	15	19	26	25	13	28	16
CAGAATTTTGATAGGG	alt_1093_fdr	38	35	38	44	29	27	57	40	53	20
GGGATCACTACGAGCG	ref_1093_fdr	65	67	60	66	91	55	60	46	90	49
TCTGATTCGGGGCCCC	ref_1093_fdr	3	6	0	1	3	0	1	2	3	1
TTCTAGGGAAGTCTGG	ref_1093_fdr	185	270	196	203	230	175	276	146	286	150
CCTAAGGTGACCTGAG	ref_1093_fdr	67	72	78	68	75	61	79	61	97	83
TGTAATGTTTTGCGGT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTCGATGTTAGGT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TGTCACACTCATAGTA	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGAACGCCACTTT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
AGGACCGTTACAAGGT	ref_1093_fdr	95	112	101	90	113	76	112	77	151	79
CATCTCGCAACGTAAG	ref_1093_fdr	16	34	24	25	22	13	32	14	21	4
CAATAATACCAAGTAC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCCTTGTGCTTTA	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGACCACGCTTGA	ref_1093_fdr	14	18	35	19	22	17	29	22	26	14
ATTTGATGTTGTCCCC	ref_1093_fdr	31	29	34	26	31	25	36	20	40	31
TTCCGTTGGGCAACAT	ref_1093_fdr	17	15	23	15	24	19	28	12	24	18
TATTAGGTTTCCTCAC	ref_1093_fdr	18	15	15	21	17	18	17	17	17	10
GCTCTTGAGCTGGCCT	ref_1093_fdr	22	18	20	21	13	16	18	14	25	12
AGACCGACTTTCGGAC	ref_1093_fdr	5	6	7	2	6	2	3	5	2	5
TCTTCATCAAGGCCGG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTCACGTCTTAT	ref_1093_fdr	26	28	22	32	31	25	21	22	26	20
GGAAAGCATGCAGTCG	alt_1093_fdr	29	59	41	28	43	31	49	37	46	33
CCGGACACTTCCGTTT	ref_1093_fdr	4	19	0	1	15	6	16	3	10	4
GTCCTGGTAGAAGGAC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTGCAGGAAGGCTTCG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCTGTCGTTACTA	ref_1093_fdr	5	2	2	0	4	2	3	2	2	3
TCTCCATCCAACGTCG	ref_1093_fdr	27	25	28	19	57	7	34	11	29	18
ATAGTATTATCCTTTT	ref_1093_fdr	10	28	19	18	17	12	17	11	21	13
GCGGTGCGTACCTTAC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGCATTTTATGTT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGGCCTTGTAGGC	alt_1093_fdr	19	14	13	17	16	4	13	17	20	7
GCTGGATATAATATGT	ref_1093_fdr	18	29	30	24	27	17	20	24	22	24
GGTGCCCGCTACTTCC	ref_1093_fdr	63	102	89	64	88	50	90	66	103	49
TATGTTCATTTACTTC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TAATAGTCATTCATTG	ref_1093_fdr	1	5	6	5	5	5	6	3	2	4
CGGTAACCCTGCGAGC	ref_1093_fdr	19	39	27	18	38	27	43	22	39	16
GGGGTTACCTCCCTTA	ref_1093_fdr	8	6	12	13	13	9	8	9	8	6
CACCCGCTTACGTACG	ref_1093_fdr	7	15	9	8	6	7	14	6	12	8
TCTATGTGGCATTTAC	ref_1093_fdr	1	6	3	1	5	4	11	1	9	1
TTAAAACTTTCACGCC	alt_1093_fdr	16	34	16	20	23	24	25	25	38	18
TGCGCACGAGGTTCTA	ref_1093_fdr	13	28	17	17	29	15	26	20	32	21
GGTTCCGATTGCGGGC	ref_1093_fdr	31	27	11	28	19	16	29	15	33	13
AGCTGTATTACTGTTC	ref_1093_fdr	58	67	68	45	80	46	89	64	85	55
ATGATTGGCGATTTCA	ref_1093_fdr	17	35	16	14	19	12	26	15	33	16
TGCGATGGTTGTGCTC	ref_1093_fdr	24	33	52	30	42	25	33	22	19	28
CGGCGTTCCTCGAAAG	ref_1093_fdr	21	18	20	11	39	17	26	17	29	11
TATAAGCTCTGCCATT	ref_1093_fdr	55	64	81	54	69	61	84	61	82	52
CTCAACTCTGCATGCT	ref_1093_fdr	10	35	20	19	29	17	32	9	38	10
AGACTATGGGGGGCCT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACAACAGGGCATTCGG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGACGTTTCGCGG	ref_1093_fdr	5	6	6	2	9	6	12	4	7	3
TTTTGGTAGTAAGAAC	ref_1093_fdr	51	100	93	55	121	55	97	54	121	57
TTTTAAAAGATGTACA	ref_1093_fdr	12	16	14	17	14	12	13	14	15	9
GCATCCCGGTCGTAAC	ref_1093_fdr	5	19	17	19	13	21	13	15	10	12
CTCTTTTAGCTGGCTC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTCACTTGCTTA	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
GCAGCTTTATGTTCTA	ref_1093_fdr	6	11	3	5	16	5	9	9	9	5
GGTTCCTTCGTACGCC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACCATCATTTTTTAAA	ref_1093_fdr	166	268	191	184	270	174	254	119	275	130
ATGTAAGCCATCGGCG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACGCGGGAGACCCCAC	ref_1093_fdr	12	19	16	14	11	12	21	12	17	11
TTGAGGCAAGGTTAAC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACCCAATTTTGTGATC	ref_1093_fdr	18	18	23	16	26	15	34	15	35	20
GCCTTGTCCTTGCCCG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
CATAACCTTGTGCTAT	alt_1093_fdr	51	83	67	55	76	62	92	66	78	46
ACTCTGTATACGTCCG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTACAGCTTAAAA	ref_1093_fdr	13	22	12	13	24	12	34	15	20	16
ATCCTATCGCGTATTC	ref_1093_fdr	65	99	80	53	84	63	113	65	88	61
TCTCGATCCGTGCGCC	ref_1093_fdr	34	45	34	26	36	22	46	21	40	17
TGTTCCACGCCTTTTT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
CCTACGCGAAAAATTG	ref_1093_fdr	57	68	65	50	75	40	71	44	83	46
TACCCAAATGCCTGCA	ref_1093_fdr	29	30	45	27	54	46	46	27	41	27
GACCCGGTTCGATTGC	ref_1093_fdr	3	16	7	6	10	4	11	4	10	6
TACGATGCTGGCGTTT	ref_1093_fdr	16	21	31	15	16	17	25	13	20	20
CAGTGTGTCTGGCCTT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGGTCAGCTTAAG	ref_1093_fdr	1	1	1	0	6	2	1	0	3	1
ACTCTGGGTCACGTGA	ref_1093_fdr	11	30	23	22	17	21	40	11	31	15
TTAGTAACATGGTTCC	ref_1093_fdr	15	14	12	13	16	13	19	16	21	10
AGATGTGTTAATATGG	ref_1093_fdr	21	24	18	15	25	25	20	20	15	6
TTCGATCCAGTCCTGC	ref_1093_fdr	26	43	37	42	36	41	44	39	57	33
CAGGGTATTGTTTCCG	ref_1093_fdr	6	12	8	7	14	12	16	4	13	10
CTTGCGCGACCTCGAT	ref_1093_fdr	158	212	160	151	203	126	200	164	223	158
TGTGTCCGGTCGGATC	alt_1093_fdr	47	42	48	53	37	41	36	37	33	50
TTACACAGCGTTTGTT	ref_1093_fdr	4	5	8	9	11	3	7	5	7	4
AGCAAGCGTTGATCGA	ref_1093_fdr	3	1	5	5	7	1	5	1	7	5
TTTCATCACTATCGTA	ref_1093_fdr	21	34	44	20	36	20	34	22	30	21
TTTGTGGTTCACATTA	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTTTAGTGTTCGA	ref_1093_fdr	38	71	49	31	62	24	74	23	67	30
TAATAGTCGTTGGGGT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACACCACATCCGGCGA	ref_1093_fdr	3	6	3	2	3	4	5	5	3	2
TCCAATCGTTCCGTCA	ref_1093_fdr	32	46	36	41	40	39	53	45	44	31
ACCTCCGCTACTGGTG	ref_1093_fdr	20	35	22	11	51	9	39	17	48	15
CGGTACATTAATTTTC	ref_1093_fdr	13	14	15	13	19	18	13	14	25	21
ATTAGGGCACTAAACA	ref_1093_fdr	13	9	10	8	23	5	14	5	14	6
ATGCTTATCGCAAAGG	ref_1093_fdr	22	22	39	21	25	25	16	17	37	19
CACGTCAACAAATAAT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGGGGGCGTCTCT	ref_1093_fdr	7	8	10	5	6	10	8	7	9	11
TTCCTTTGATTTTCGA	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGCGTTTCCGCAT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTCATGTGTATCC	ref_1093_fdr	15	37	29	18	33	27	30	11	39	19
GTTTGAGCGTCTTGCG	ref_1093_fdr	18	18	14	5	16	21	30	13	26	9
CAACTTCGCTTCATGC	ref_1093_fdr	36	52	41	28	55	30	73	32	50	25
ACCATCATTATTTAAA	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
AGTCATAGCTCTTTGG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
GCATCTCTAGTTCGAT	ref_1093_fdr	30	44	25	28	39	22	37	14	48	27
CTCTGCTTCACTAATA	ref_1093_fdr	34	54	33	36	50	43	41	29	64	30
TCAGCCTCTTTTGTCT	ref_1093_fdr	6	23	9	5	40	2	29	3	35	0
TCTGTTACATAGGTGT	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
GTCGATGACGCTACGG	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCCCGTGAGCTC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTTTTGCCCAACG	ref_1093_fdr	60	58	48	46	66	44	51	37	87	36
GTGTGAGTTCCGCGGT	ref_1093_fdr	15	16	14	11	18	12	16	18	18	9
GAGAGCGAGGGGGCTA	ref_1093_fdr	5	9	17	3	4	5	9	2	11	5
CTTAAGTGCTATTTTC	ref_1093_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCTTCCTCCGGGA	ref_2077_missing	8	15	11	10	15	8	8	8	13	10
TCATCGCGGCACTGTT	ref_2077_missing	5	3	3	3	5	4	7	0	2	3
TCAGGTCCACACCGCA	ref_2077_missing	18	29	19	22	26	13	23	13	29	9
CTTGACAATTAAAGCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGCATGGACTTCAGTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CAAGGGTTCGATCTTA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CCGGACCTGCAGTCTT	ref_2077_missing	12	10	11	2	20	9	24	6	15	5
AGGATTACGGGCCTCA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CCACAGGCCGAAAACT	ref_2077_missing	10	7	7	11	11	9	13	8	8	11
TCGTAATATTTTCACT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GCAGCCGCCTTAGAAG	ref_2077_missing	4	19	6	3	17	4	14	3	20	3
TTATTTCCTCCTGTAC	ref_2077_missing	44	48	55	41	57	50	49	42	65	42
CCAAGATCAGATTGGT	ref_2077_missing	0	0	0	0	1	0	0	0	0	1
CCGGTCTGACACCGAT	ref_2077_missing	3	4	3	7	6	9	9	2	10	1
TCCCCCTCTAGAACAG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGGCGACTTTCCCAAA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CAAGGGGAAGGGCTAT	ref_2077_missing	23	32	32	27	30	22	50	29	26	28
TATTATCCTTTCTGCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TACTATGTTGCCTTAG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CGTCACTAATTGCACG	ref_2077_missing	25	27	26	29	42	18	35	12	27	27
GCCGATCCCTGAGGTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ATACTTTGTGCAGCAG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CTGGTCATGACCGCCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GCGCGGATGATCACAG	alt_2077_missing	3	6	2	2	5	4	7	2	2	8
CGCTTTTCTCATGACT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ATCTCTCCTGATGCTC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CGTAACATCAGCTGAC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GCGTCAAAAACTCGGA	ref_2077_missing	1	7	7	5	6	3	7	2	4	3
AGTAGCATATGAGGTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTTGACGGCCTAGCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTATGGCTCTCACTGC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GAAATTAGCTCACTGT	ref_2077_missing	29	32	36	26	53	21	48	32	45	34
GGCTAAAGATTGGACA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTCGTCCTTTCAATT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CGCTCCCGTTCTGGGA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCACTTCGGATCGTGA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACTCGGTCTCGGTTGG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TACGGATGGTTTTTTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CAGTTAAGTTACGTGC	ref_2077_missing	7	7	6	8	4	5	11	4	11	4
TAGCAACTGCGGTATG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AGTTAGCCTGGGCCCC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AACTGGTAATCACGGC	ref_2077_missing	2	13	6	4	9	2	8	5	6	7
TTTAAACGGCGTATGA	ref_2077_missing	1	10	2	2	3	1	5	8	3	1
ACTTGGCTGGGACGCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TATCGCGCTTGAGAGG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTGCCACCAATTAAC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCGCGCAGGCCACGTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCGGTTAAGCCTGTTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTCGGTAGCACGACCG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CACCTCCCTATGAGTG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CTACTTTATGAGTTTC	ref_2077_missing	19	15	24	18	23	12	16	9	21	13
GTTAAGACATAGCGTT	ref_2077_missing	7	4	1	2	7	3	6	8	9	4
TAAATTGCACATTCAT	alt_2077_missing	0	12	15	6	15	8	10	9	14	2
TTGTACTACAGTACGC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AGGTTCGTTGCCACCC	ref_2077_missing	8	13	10	10	13	9	9	4	6	4
ACTTCATCAGGAAATT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TATCCCATATATTTTC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTTCGGTCATATGAG	ref_2077_missing	3	5	4	4	0	2	6	4	3	3
GGAAGTTACACCTTCG	ref_2077_missing	0	3	0	0	3	0	0	0	0	2
CAAATGACTCGCGCTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CTGGAACTTGCCTCAA	ref_2077_missing	9	44	17	5	54	10	44	10	25	10
GGCATAGGCGTTTTAA	ref_2077_missing	11	19	12	6	9	19	29	13	14	5
GCAATGTAAGGTGTCT	ref_2077_missing	17	18	13	9	16	11	19	8	17	12
AAGTGTGACTTCGGCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTGTAGCGTAAAGTC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GACGTTTTACGACCGA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ACGGGAGCTTTTGGTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCTTATGTCGCATCAA	ref_2077_missing	7	8	16	12	4	5	8	13	11	7
TGGTATGGGTCACTTA	ref_2077_missing	2	13	6	6	15	13	6	5	14	2
CGTCTGTACGACACTG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GCTGATCAAGTCACTT	ref_2077_missing	17	22	14	18	16	14	25	3	26	14
CCTCTCCCTATCCTTA	ref_2077_missing	2	5	1	0	5	1	0	3	5	3
CTAATTTACCCACGCT	ref_2077_missing	5	4	6	2	5	5	12	10	2	3
ATCCATGTGTCAAAAC	alt_2077_missing	25	65	45	50	62	33	74	39	70	49
GCTGAAGGACTATTAT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GCGCCACCCGCTGGTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ACGGTCGAAAGCAGCG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CGTAGGGAAACGATTT	ref_2077_missing	9	15	4	4	14	7	18	12	16	8
TTGAGTGGTAAATGCG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTCGTTAGTGATTTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GCAGAAATCCTGTGAG	ref_2077_missing	3	2	7	3	6	3	4	10	2	2
TTCTTGTCGTGTCACG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CTTGTCGCCGCAGTAT	ref_2077_missing	11	19	11	13	25	7	51	12	29	6
GTATTACCGGGTCTGT	ref_2077_missing	5	3	1	7	5	0	2	2	4	4
AAGATTTTACCTGAAC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GAGTCGGTGTCCGTAA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CCGTCATACCAATGGA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GTTTCAGTATTGTTCG	ref_2077_missing	0	2	1	4	5	1	2	1	3	2
TATCTGCGTCCGGGGC	ref_2077_missing	14	10	19	9	17	13	16	7	10	7
CTACAGTTTCGTATCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTCTCCGGGCCCTGG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGGTGCTAAATAGTAT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTCGTTTTGGTATTA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTTACGATGGTACTC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AGTTTACTGTCCCCCA	ref_2077_missing	2	7	3	2	1	2	1	7	5	4
GCGGACTAGGCGTTAG	ref_2077_missing	5	7	4	0	4	2	3	4	5	6
TCCTAATTATTTCGGT	ref_2077_missing	11	12	13	12	20	16	13	6	20	14
CCTTCGTTTGGAATGG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CAATCATTAACTTATG	ref_2077_missing	28	33	25	15	29	22	39	22	30	23
GTCGGTTCCCTCCTGG	ref_2077_missing	3	3	3	4	16	1	11	4	8	3
ATATGTGTTACACCTC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ATATTAGGCCTGACAG	ref_2077_missing	16	23	14	10	19	13	23	16	22	14
GTTTGGGTACTGTTTG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AAATCTAGTGTCGGAG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CTCCGGGATACGTCAG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CAGTTGCGACGCCCCG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCACTGTGACCGCTTA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCCGCCTCTGACTCGA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ATTCTGGCATCCGGGT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTTTACGTCGCTCTA	ref_2077_missing	12	12	9	6	14	11	11	7	6	7
CTCGGAAGGAGGTTTG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTACAGAATCATCAGT	ref_2077_missing	17	23	29	23	33	20	29	15	24	11
TGGTTTTCTGTATGGA	ref_2077_missing	10	6	7	4	5	6	14	2	12	4
GCGTTCTGCGCTCTGG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
GCAGGATGCACGGTTT	ref_2077_missing	2	2	3	5	2	4	5	3	3	3
TTGCCTTGGTTTCAGG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTATGTCCCAGACCC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TAAGCATCGTACCCAG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TATAGTGTAGGCTCCT	ref_2077_missing	39	54	46	38	60	36	79	43	62	38
CATTGAACTCGGAGTG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TTCATCTCTCGAAAAT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CAGGATAGGGGGGACA	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TAGCATTTTTTTGGTA	ref_2077_missing	0	0	0	1	1	0	2	1	2	0
GAAATAATCATATTCT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCGTTCGCCAACAGAG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AAGTCAACTTCTATAG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CAGTAGTAATGTGGAT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AACTCTACCGGAATGG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ATGCACCCGATTGAGT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TGAAAGATTGCGGCTG	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ATGAAGTCTACTACCC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
ATGCTGTATTCGTCGC	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
AGAGTTGTAAATATTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
TCGCGTCTTATTAGTT	ref_2077_missing	0	0	0	0	0	0	0	0	0	0
CTAGTCACAAAGATCC	ref_2077_missing	3	15	9	7	15	12	15	5	9	6
CCTGGTGGTGTTCCAC	ref_5810_new	105	110	122	108	129	102	128	109	140	115
CCCCGGTATTAGTTTC	ref_5810_new	17	31	24	18	15	31	39	17	21	26
GGATTCCTAAAATTTA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GTAACCTCCAGTCATA	ref_5810_new	6	6	3	7	8	7	4	8	12	6
ATTCTGACACTGAGCG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CAGGCTCCTTAATCAA	ref_5810_new	2	4	10	12	10	8	13	6	9	8
AACAGTATCCCCGCCG	ref_5810_new	12	29	12	8	28	9	34	6	26	4
TCGGCGATCAATGGCC	ref_5810_new	128	84	146	122	84	141	88	103	88	93
CTCAATCGGGTTGTTT	ref_5810_new	107	125	147	116	108	107	131	99	146	116
TATCGCTAACCATGTG	ref_5810_new	3	7	11	3	5	5	6	6	4	4
ACTTATAGAGCGAACA	ref_5810_new	32	50	32	47	46	36	49	38	56	36
CTTACGCTGTCGCGCC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
ATTACCACCTATCCCA	ref_5810_new	16	13	16	15	9	8	11	5	9	13
ATGGGGTTACTGGCCT	ref_5810_new	45	45	75	59	65	54	56	44	47	50
TTCCGCGTTATGAAAT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TGCTCTTACTACGTTC	ref_5810_new	23	19	32	22	20	18	19	33	22	26
TGTGGGATGACAGATA	ref_5810_new	0	1	1	0	1	0	1	1	3	1
TTACGCCGAGGATCTT	ref_5810_new	10	5	7	5	11	7	2	4	8	9
CTCCCGTATTGATTTG	ref_5810_new	7	15	5	15	11	10	20	7	15	10
GCACTGTAAGTTTGGT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CTAGATTGAGTTGTGG	ref_5810_new	38	60	40	52	65	50	57	25	72	46
TACGCGACGTAAGCCT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
ATCGCTTTGGTGGATT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
AGTTTATCGAACCTGG	ref_5810_new	0	0	4	2	2	1	2	1	2	1
GTATGATGTGCGTCCG	ref_5810_new	25	25	41	35	38	35	34	25	31	29
CCTGCAGGTATCCGAG	ref_5810_new	21	40	35	41	46	18	32	27	39	28
CCAGTCTTTCGCTCAT	ref_5810_new	15	20	11	12	14	19	17	5	17	9
GCATTCAGCGCATGTC	ref_5810_new	35	36	40	41	33	42	42	34	41	36
TTCGACGCGCAACTCA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TTACGCTCGTGTTCAA	ref_5810_new	41	58	53	46	53	40	58	58	56	43
AGCCTGGGGGCTATTG	ref_5810_new	54	42	49	44	40	42	35	28	37	27
TCCGTAATGGGTCTAT	ref_5810_new	9	3	6	10	4	4	5	6	6	7
ACCTCGTACAGTTACC	ref_5810_new	70	81	85	82	77	68	84	63	91	55
GTTTCTCTAAGGCCCG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GAGTTTCGCAAGGCGG	ref_5810_new	20	45	27	28	24	28	25	22	33	16
CGTTCGCCGATTCTCA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
AATTGCCGTTTTCGAC	ref_5810_new	12	9	6	6	11	10	9	4	11	2
CAATGATCTATTACCC	ref_5810_new	2	3	4	5	5	2	5	0	1	5
CATCCAACAAGAAATT	ref_5810_new	12	10	19	8	15	3	9	18	6	10
GACGGAAGTGTGGTTA	ref_5810_new	62	49	53	55	48	68	57	37	44	36
GGTCACCTTCTAAGAA	ref_5810_new	32	25	45	44	28	29	41	32	44	25
TCGGGCTGGGCCTCCA	ref_5810_new	9	19	12	12	11	15	9	13	10	10
ATTAACTTTGGTTTCA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GCTCTTATCCATATCT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
ACTACCTATGTTTTCG	ref_5810_new	0	0	1	2	0	2	0	0	0	1
ACAAACGCCCCTATCA	ref_5810_new	26	26	30	21	22	18	22	29	17	21
GTTTAGGTTCTGAAAA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GCCGACTCTGTTGGTC	ref_5810_new	42	38	25	32	28	28	49	30	44	27
CGTCTTGTATGTACGG	ref_5810_new	39	34	48	59	26	30	48	32	39	35
TATTACTCATGTTTCT	ref_5810_new	48	49	49	44	44	54	35	41	59	32
GCGCTCCGTGTCTGAG	ref_5810_new	15	10	16	11	14	11	28	13	9	9
CCTGGCGAGTTTTAGC	ref_5810_new	3	4	3	1	2	5	7	0	1	2
TTCAGACCATAACGCT	ref_5810_new	48	55	58	46	71	43	66	46	64	47
CGTGTGCCTTTTAGCG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TTGGCCAGAGATGTTA	ref_5810_new	22	7	8	8	11	7	6	14	10	11
TTTAATCTTTTCTCGA	ref_5810_new	77	62	80	69	63	62	67	70	81	57
AATGTTGGGTCAATCC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCGTATAACAG	ref_5810_new	95	115	147	121	112	115	147	91	156	115
AACTGATTATTAAATA	ref_5810_new	192	197	260	205	204	179	198	173	168	180
TTTAAGCGGGGACTTT	ref_5810_new	13	26	9	13	10	10	17	9	16	13
CTCCTCTCCGGGTAAT	ref_5810_new	40	37	27	25	28	18	50	25	37	13
TGGTTCAGCATACGAG	ref_5810_new	48	49	64	44	45	51	69	38	65	43
TTGCTTCGCGATATAG	ref_5810_new	2	13	4	3	6	10	4	4	8	6
TAACTACTGCTTTTAT	ref_5810_new	9	10	7	6	6	16	14	9	11	4
CATGGACGGCTGTATA	ref_5810_new	127	107	167	126	113	129	107	102	112	94
CCCCTACTTATTCACG	ref_5810_new	311	316	319	309	300	269	339	246	349	263
GTTGGTGCGTTCGTAA	ref_5810_new	14	20	19	13	34	8	16	11	26	12
CGTCCTCTCGATACCT	ref_5810_new	102	102	123	96	110	93	98	91	92	89
AAAGCTTGTCCTACAT	ref_5810_new	75	50	76	60	77	63	61	46	60	53
TAGGTCCAGGATTTGC	ref_5810_new	6	2	12	2	11	6	10	0	13	0
TTTTGTAGAGCTTTGA	ref_5810_new	40	33	63	38	38	50	38	37	48	19
TGTCAGAAGCGTGGAT	ref_5810_new	17	15	25	19	17	25	25	27	33	26
TATAATTGAGTGCTCG	ref_5810_new	56	61	87	93	71	83	72	56	75	51
CCCGACTTTGCCATTG	ref_5810_new	3	1	0	1	6	4	4	2	5	6
TACGCTCAGCCGTTCG	ref_5810_new	21	24	17	18	32	12	16	16	22	13
CGATACGAGGCCCTTA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
AGCTATCAGTTAAGCG	ref_5810_new	68	68	75	71	67	53	52	48	78	45
TACATGCTTGCCTAAT	ref_5810_new	12	11	16	16	13	14	13	13	17	8
TAGTCTCTTGGTTTCG	ref_5810_new	117	100	140	103	103	106	108	103	95	96
CGAACTGAGACTCGGG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
ATACGTTGTAGTGAGT	ref_5810_new	9	5	11	9	5	9	12	12	18	14
TAGTTTAGCCCTTTGT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
AGCCCCTTATACTGTC	ref_5810_new	7	8	8	2	12	6	3	6	4	4
CCATATAATTGCTTGG	ref_5810_new	6	13	10	12	7	6	8	2	5	12
ATGGTCGTTGCACCGC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
AAGCGATTGAGCCTCA	ref_5810_new	55	70	71	69	55	71	49	48	81	63
CCACGTTCGGGTTAGT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
ATGGTCAGGTCTGTCC	ref_5810_new	17	29	7	15	29	14	47	23	27	11
TAACCTGTTTGCTAGT	ref_5810_new	4	7	1	2	4	8	8	4	6	9
GTTGTGCTCTATGTTT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GAGGCGGGCGGTTGTT	ref_5810_new	87	82	97	79	76	77	81	53	100	66
CTGTTTCTGAAATACG	ref_5810_new	97	102	106	104	113	81	112	90	105	71
GGAGTTTCGGTAGTAG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CGAAGATTGTACACCT	ref_5810_new	43	40	52	45	48	49	45	41	41	57
TACCCAGTAGTCTGTG	ref_5810_new	26	35	26	19	22	14	17	15	12	25
TATACACGCATACTTA	ref_5810_new	8	12	13	13	17	15	18	7	15	8
ATTAAATTGGCCGTCG	ref_5810_new	179	185	209	195	176	195	207	167	189	197
TCTAGAGTCTCCTCGT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GTTGCACACGACGGTT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GGGTACTTGTACCCAT	ref_5810_new	33	27	31	28	27	15	24	26	40	18
ATTTCCACGTTTTGGT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GGTTATTATCGTGATT	ref_5810_new	11	8	6	5	10	8	10	2	16	4
TTCCTAACATAATGGA	ref_5810_new	29	15	28	16	33	29	27	28	32	16
GATCCAGCGAGACGAC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GCTCGCATATTTCAGT	ref_5810_new	102	102	116	70	111	88	110	92	108	77
AATCCCATACAGCTAG	ref_5810_new	54	40	57	50	44	49	34	53	61	36
TGGGACTTTCTTCTCT	ref_5810_new	69	58	95	76	67	62	90	59	69	45
CCTGACTTGGTTTGTA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TTCCTCACATAGCCCA	ref_5810_new	55	34	64	42	30	39	31	38	34	34
CGTTTGGGTTAGGAAA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TTGGGAGTGGATTGAA	ref_5810_new	10	5	9	7	7	2	12	6	11	9
TGAAGGGTGCGTTTGA	ref_5810_new	23	30	28	20	33	27	32	28	30	30
TAACCGCTGGGTCCCA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GCTGAAGGAGTCTTCC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
AAACCTTTTCTGCTCT	ref_5810_new	6	4	17	18	4	6	4	3	12	9
TTTGTGGCAAGTGCAG	ref_5810_new	79	84	104	83	100	83	91	83	108	78
TGGCTTACCAGTTTAT	ref_5810_new	0	8	5	7	10	11	6	3	15	3
CCAATCGGCCCTCAAT	ref_5810_new	34	32	52	56	49	40	40	42	33	23
CAATGGGGAGGCCGTT	ref_5810_new	16	20	25	19	18	19	28	17	19	9
GCATTTTTTAGCGGTC	ref_5810_new	39	42	48	37	39	33	41	32	40	28
TTGGCGGGTAACTTGC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TTACTTTAGAACTGGC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GTTGTTTCTGTTTAAA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CCCCAAGGGGGTTGGG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GTGGCTCAGGTCGGGA	ref_5810_new	17	6	9	15	9	7	15	9	25	11
GAACCTTGCGACTCGG	ref_5810_new	57	66	100	49	67	77	66	65	82	59
CGTGTCTAGCGGGCTT	ref_5810_new	19	23	19	22	16	14	15	24	23	19
AGGTCTTTGAGAACCA	ref_5810_new	2	5	2	7	2	2	8	1	2	0
TCGGGACTCTATCATG	ref_5810_new	1	7	7	7	6	6	16	3	7	6
TGTATTCTAGAACCTC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GACTTATTGTTTATCG	ref_5810_new	22	16	20	11	21	14	24	13	18	15
TTGAGCTCGGCAAATT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CACAATGCGTCAGTCA	ref_5810_new	47	40	41	52	46	31	36	34	51	28
GCTATCAGGTACATGG	ref_5810_new	12	4	9	9	8	8	7	4	15	5
GTAAGCCCCCTTGGGA	ref_5810_new	13	13	19	27	11	12	20	20	7	14
ACTCTGAAACATTTGT	ref_5810_new	71	36	67	64	70	52	56	67	58	68
AGGATAGAAACCGCAA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CTTTGGCTTCTGTTCG	ref_5810_new	4	14	5	4	6	4	9	7	10	2
TTGCGTATCCCCTCCA	ref_5810_new	7	4	8	6	11	5	10	11	6	6
TCCAGGCGCATGACCT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CCCAAGACCGTATACC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GATCTTTCTCTGTAGC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CTGTTGCAAGGTCAAT	ref_5810_new	42	41	39	40	36	43	42	31	39	35
AGGATAGATACCGCAA	ref_5810_new	163	156	180	171	150	154	163	144	164	140
GTTTAGGATTTTCTTA	ref_5810_new	2	0	1	1	0	4	2	3	2	3
GCAGCTCTTTTCAAAC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GGACAGCAACATTTAC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
AAGTCTTCCCATTTGA	ref_5810_new	12	19	50	17	18	18	23	21	22	26
CGCTCGTGCATATTAT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GTAGCCTGCTATACCA	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TATATCGTGAGTGAAG	ref_5810_new	3	15	15	10	16	13	14	6	10	9
CCACTGCCGGAGATAT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
CCCCTACTTATTCACT	ref_5810_new	0	0	0	1	0	0	0	0	0	0
ATTCCTTTACTGTAGG	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GCTAGGTTCAATCATA	ref_5810_new	43	73	62	67	68	53	71	46	86	45
TATTTTTGTAGGAACT	ref_5810_new	18	44	28	25	22	17	29	36	35	20
GCCTAGGAAAGGGGCT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
TTCTGAGGTATATATC	ref_5810_new	54	68	56	60	65	49	54	63	62	55
TAGTTTCATTATCCGC	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GAACGAAAGAGACTTT	ref_5810_new	0	0	0	0	0	0	0	0	0	0
GCTATAGTAGTTGGGC	ref_5810_new	11	14	20	9	9	14	14	9	16	15
TCAGTTCCATTTCTGT	ref_5810_new	5	9	18	13	8	12	12	4	16	11
ATTTGTAGGTCCGCGC	ref_5810_new	98	121	123	91	101	90	99	100	109	78
CTAGTTGCGGTTACTT	ref_5810_new	15	33	24	24	31	30	29	14	18	15
TACACGCCGTTAGCGG	alt_4925_RC	34	29	51	39	45	26	36	34	44	25
AGGCGCAATCCTTACT	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
TTGTCTTATTGTTTAT	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
TTGTTACATGGCGTCA	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
GAATTTTGCCTATATT	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
TCTTTAGTGTGACCGT	alt_4925_RC	3	2	11	6	6	3	7	1	2	4
TCGTGCTGTGGCGGCC	alt_4925_RC	60	66	92	85	65	79	88	50	86	53
CCGTCTTAGTCAGGCG	alt_4925_RC	11	9	15	11	12	18	26	11	24	9
TTATCGCAGTTCATTT	alt_4925_RC	15	14	12	8	9	6	15	8	7	4
CCTATATTCTGTCATC	alt_4925_RC	12	24	12	22	34	16	26	17	29	14
TTAAATCCTTATGGCG	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
GTTAGGCTGTCTGGCA	alt_4925_RC	61	67	62	64	94	64	95	56	111	55
TATGAACTGTTTCCGA	alt_4925_RC	31	26	25	22	42	19	45	28	31	22
TTCTCGTTTGACTGGT	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
AGATAGGGCGCAGCTC	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
ATAAGCGTACTTGGGA	alt_4925_RC	39	65	60	41	67	29	68	39	74	47
TTCCTGCGATTGATGC	alt_4925_RC	21	45	36	28	26	31	45	27	40	32
CTAACTGCGGAATGCT	alt_4925_RC	19	32	28	21	38	27	39	18	40	19
CAGTTTTTACAATACT	alt_4925_RC	12	24	13	9	18	15	24	12	24	10
TCTTTCACCATTCTAA	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
GTCACTGCGCACCTAT	alt_4925_RC	6	9	6	11	10	7	6	5	12	5
CGAGTCTCCTCACTAT	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
AGGGTTCGATTTGTTA	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
ACCCTAAATCCGTGGG	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
TAAGATTGTATATTTT	alt_4925_RC	6	8	17	9	8	12	13	7	17	7
TTTCAATAGACTATGT	alt_4925_RC	33	59	50	35	51	34	52	28	51	35
CATCAGCTGGCCCAGC	alt_4925_RC	23	47	52	34	61	37	57	24	58	41
AACCGAAGCGGGTCGG	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
TTAGATTAAGCACTCG	alt_4925_RC	6	0	11	2	8	5	3	0	4	2
ACCAGTCTAAGTTGTA	alt_4925_RC	11	21	10	19	28	16	28	15	22	14
ATTGACGGTCTCTGGA	alt_4925_RC	5	2	2	0	0	1	3	1	4	0
CCTAAGTTGTTATGTT	alt_4925_RC	35	47	34	25	45	28	33	25	36	37
ACTGCTCCGTGGACTA	alt_4925_RC	33	50	45	46	52	31	63	33	59	29
TAAGGCGCTCAACCGT	alt_4925_RC	19	20	26	11	35	20	25	12	27	10
CGACGATACGTTAACG	alt_4925_RC	28	21	21	11	29	22	28	24	24	18
CGCACGACGTTGGCTT	alt_4925_RC	2	2	5	6	6	2	4	5	5	3
TCACTTTGTCTTTGTT	alt_4925_RC	67	59	66	56	44	48	62	62	59	59
TCTAATCAGAGACTGC	alt_4925_RC	8	9	2	11	12	1	8	3	8	7
CGAATTTTTTTTGCCT	alt_4925_RC	10	11	16	9	6	14	7	13	10	9
ATCATGCCTCTATCTG	alt_4925_RC	47	57	62	53	58	33	72	62	67	40
GCTAACACTTTACCTA	alt_4925_RC	49	68	66	52	83	57	85	42	93	57
ACTCCTAGGCGCGTAG	alt_4925_RC	7	14	16	6	23	7	22	1	22	14
AGCACTTTATGTTCTG	alt_4925_RC	26	29	23	28	20	22	32	12	30	26
CTTCCTTCTCTACGAC	alt_4925_RC	27	51	57	43	59	24	43	25	46	30
ATTTGTTATCTTGACA	alt_4925_RC	14	18	20	22	18	17	22	19	17	21
TTACCGAGTATGGCGA	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
AGTAGCGAGACCTTAG	alt_4925_RC	20	31	32	16	30	25	26	22	38	29
CACCCTTGTGATTTTG	alt_4925_RC	8	15	9	7	11	4	10	11	6	4
GCAGCGGCGCTAAGAG	alt_4925_RC	7	11	16	9	11	8	16	5	10	9
GCGTTTTCATTACCGG	alt_4925_RC	26	28	31	30	43	22	30	20	35	33
TTTAGCTCGCTGTGGT	alt_4925_RC	14	20	15	9	15	14	19	2	25	7
GGGCGATATAACATGG	alt_4925_RC	17	7	17	17	17	11	17	12	22	14
GCACATAATACTACGT	alt_4925_RC	71	107	82	91	117	79	112	74	114	71
CGTACAACGTATTCTG	alt_4925_RC	55	83	80	68	69	61	91	69	108	75
CTCATGTGTTGTGATG	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
ATCCGTATCCTCATGG	alt_4925_RC	106	106	137	131	152	107	123	119	145	111
TATCTCCATGCAGTTC	alt_4925_RC	18	19	18	15	23	19	32	15	12	12
GTCTGCCAATTAATGT	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
CCTCATCACTGGAGGG	alt_4925_RC	54	104	83	59	93	75	83	51	94	50
TTCCAAGTGCCCTTTT	alt_4925_RC	24	76	53	28	68	35	69	54	76	41
GTCCTCGTTAACTACG	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
CGCATAGGTTCTTTGA	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
ATCCTCTCGTGGAAGC	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
GCCCTCGTCGGCATTA	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
TTTATAGAGTCGAAGC	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
CCACGCATCGGGTTTA	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
GATATGGGTAAAGTTC	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTGAGGTAATTA	alt_4925_RC	1	4	0	6	3	2	5	6	5	3
TACGTCAGAGAGCCCG	alt_4925_RC	16	22	20	9	26	8	23	16	20	20
GGTTATATCCATTTGC	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
ACTGTGTGTGCACCTA	alt_4925_RC	11	16	24	12	12	11	20	17	25	14
GGCCCCGAATCTGTGG	alt_4925_RC	0	0	0	0	0	0	0	0	0	0
GGATCTTTCAGGCTGC	alt_4925_RC	26	45	35	31	56	32	57	19	54	17
GCGGCTTACTTATGAT	alt_4925_RC	21	16	10	12	14	17	15	10	17	13
GTTCCCTTTCTCTGTC	alt_4925_RC	3	16	13	4	15	5	24	16	6	13
GGGGTTTAGAATCGGG	alt_5872_new	0	0	0	0	0	0	0	0	0	0
GTACTGGGAGTATTTT	alt_5872_new	12	5	11	5	7	19	4	6	9	11
AACCCACTCCTTGTGT	alt_5872_new	318	178	426	307	245	298	207	347	230	293
GCTATCCGGCTATGTT	alt_5872_new	64	27	78	44	33	53	38	36	37	55
CTTGGACATTTCTGTT	alt_5872_new	48	11	44	33	14	49	19	28	26	41
CGACCGCATTTGAGTA	alt_5872_new	21	12	39	28	17	22	13	31	17	26
TTTCATATAAACCGGC	alt_5872_new	21	18	17	9	9	15	10	16	11	15
ATCATGTGAGTTCAAG	alt_5872_new	67	32	68	51	29	51	26	46	27	33
CTGCGAGTACGCAATT	alt_5872_new	110	69	151	95	60	130	69	122	68	93
ACTTTGATTTCTTAAG	alt_5872_new	23	9	22	20	6	38	5	11	3	17
CTAATCATATTTCAGT	alt_5872_new	63	24	73	54	27	65	35	60	42	67
AGATATCACTATCACT	alt_5872_new	84	46	75	54	45	59	34	70	38	89
TTTGCGTCCGGTGCTC	alt_5872_new	121	57	139	101	54	102	57	129	43	107
TCTCGAGTAATCAATT	alt_5872_new	169	61	145	99	70	146	63	123	74	127
GAGTGTCCTCGAGTCT	alt_5872_new	133	79	170	99	49	122	63	78	60	122
TTTTCCACAACAGATA	alt_5872_new	234	118	278	204	106	188	126	193	112	180
AGTATCAAGCTTGTGG	alt_5872_new	108	45	124	60	59	92	40	93	54	91
TGTTCCCATCCTTTTA	alt_5872_new	0	0	0	0	0	0	0	0	0	0
GAGGATTATCTTGTAT	ref_5872_new	168	61	164	130	64	132	84	143	73	129
TCAATTTATGCCTCCT	alt_5872_new	180	84	252	177	75	179	101	147	73	165
GCGCGTCGTCATTTTG	alt_5872_new	235	99	256	186	111	190	86	189	114	227
TATGGGAATGCGTATT	alt_5872_new	0	0	0	0	0	0	0	0	0	0
GCTTTGTCTAAGGCCG	ref_5872_new	610	283	688	479	274	541	284	538	330	501
TCGGGTACAATCCCAG	alt_5872_new	21	15	20	11	9	19	7	9	10	18
GCGTGAGTTGGCAGTA	alt_5872_new	0	0	0	0	0	0	0	0	0	0
TAGTTCCGCGAACGGT	alt_5872_new	89	33	87	61	38	60	36	65	28	72
ACAATCGCTCGGTTAA	alt_5872_new	79	34	74	59	39	56	45	53	54	62
ACGCCTGGCGCTAAGG	alt_5872_new	0	0	0	0	0	0	0	0	0	0
CGCGTGGGATTTGTAC	alt_5872_new	0	0	0	0	0	0	0	0	0	0
GTCCGAATTGAGCTGT	alt_5872_new	45	24	67	44	20	52	25	48	25	28
ATGGGGTGGACGTTAT	alt_5872_new	68	24	76	47	19	53	27	50	32	75
CGAATCTAGAGTTTAG	alt_5872_new	0	0	0	0	0	0	0	0	0	0
GGACTTAGACTGTTGT	alt_5872_new	7	11	6	10	20	18	10	9	15	7
GCATCCTTCGAGCTAG	alt_5872_new	52	38	65	54	40	49	37	47	36	59
CCTTCGCTTCTCGATG	alt_5872_new	68	23	48	36	18	51	30	32	23	58
AGGCTAACCACTGGCT	alt_5872_new	68	25	55	57	30	51	38	47	34	65
TGGTCTGACTCTGACG	alt_5872_new	0	0	0	0	0	0	0	0	0	0
AACGAACTTGGACAAT	alt_5872_new	0	0	0	0	0	0	0	0	0	0
AGAGGCGTAAATCGAG	alt_5872_new	35	26	48	36	26	37	24	37	28	25
CTTCATGTGCAATTTG	alt_5872_new	63	25	95	56	32	59	33	51	31	57
CACTGTCTATGCCTCA	alt_5872_new	33	16	32	27	22	22	24	18	11	29
TGCAACCTAATAGGGC	alt_5872_new	41	23	58	47	26	52	34	45	30	48
CAGGTACCGTTCTGGT	alt_5872_new	0	0	0	0	0	0	0	0	0	0
TGAGCTAATTCTCCAT	alt_5872_new	33	15	25	15	17	22	6	29	13	13
TCGTTGGTGGGCGCCT	alt_5872_new	80	43	106	63	31	74	29	65	30	79
TTCAATTCCCGACCGA	alt_5872_new	0	0	0	0	0	0	0	0	0	0
ATTCTGATATAAATTT	alt_5872_new	249	205	301	235	206	214	214	246	205	224
CCCTAAAAAGTCTTGT	alt_5872_new	0	0	0	0	0	0	0	0	0	0
GATTCAAATGACCAAT	alt_5872_new	9	3	5	6	3	6	4	1	1	1
TTATGGATCCCGCCTT	alt_5872_new	37	27	55	40	29	55	21	37	31	68
CGTTGGCTGCTTTCTT	alt_5872_new	94	37	83	86	49	63	49	63	46	84
TCTCTAGAACCAACAA	alt_5872_new	0	0	0	0	0	0	0	0	0	0
ACGGCCGAAATACTGC	alt_5872_new	20	23	34	22	18	35	29	30	24	25
GTTTAGTTAGGCGTCC	alt_5872_new	98	24	103	60	34	87	43	77	33	72
GCCGGGTGGCAAACTT	alt_5872_new	0	0	0	0	0	0	0	0	0	0
GTATCAAGGAATAGTG	ref_939_RC	137	68	149	148	71	122	57	142	67	128
GTTGTGAGAGTCCCAG	ref_939_RC	91	41	86	95	38	81	33	89	41	68
ATCCACTACCGCTTCC	ref_939_RC	17	6	14	18	9	14	2	9	3	15
ATAAATCAAATGGAAC	ref_939_RC	83	32	79	56	30	52	43	67	31	57
CGAGTATGGAGGTTTT	ref_939_RC	72	27	85	73	20	62	19	64	25	55
TAATTCCAATTTCTTC	ref_939_RC	158	36	200	144	30	134	40	166	50	152
CATCTGCTACCTCTGA	ref_939_RC	37	14	49	31	28	34	15	36	20	31
GTATTATCTTCCTTAC	ref_939_RC	148	63	181	144	88	128	86	157	53	130
TAGGTTAATTCGCCTT	ref_939_RC	13	29	15	7	14	9	10	6	12	12
TCGATTCGTTTCGACT	ref_939_RC	42	22	54	56	19	36	18	21	32	37
CCCGGGGATGCCATCA	ref_939_RC	0	0	0	0	0	0	0	0	0	0
GAAGAGTAAAGTGCAC	ref_939_RC	26	7	28	34	8	25	12	28	13	18
CTTGTCGCTACGTTCT	ref_939_RC	0	0	0	0	0	0	0	0	0	0
CTCTTACCCTACCTTT	ref_939_RC	10	9	15	21	10	14	12	13	4	17
TTATGTTTGCCATCCT	ref_939_RC	142	70	188	137	76	149	54	147	97	135
TGCATAACGACTGTAG	ref_939_RC	0	0	0	0	0	0	0	0	0	0
CTGACTTCGGTCAAAC	ref_939_RC	0	0	0	0	0	0	0	0	0	0
TCGGATTGGGATGGTA	ref_939_RC	0	0	0	0	0	0	0	0	0	0
GCTTGATGATTACCCA	ref_939_RC	93	66	160	111	64	114	84	99	64	100
TACCCTCAGCTCTGGA	alt_939_RC	420	288	474	470	286	365	271	364	307	368
CGCATTTTAACCACTT	ref_939_RC	6	14	8	7	17	5	11	7	8	9
ATCCTGTGCCCCAATA	ref_939_RC	367	137	458	387	167	354	118	346	135	335
AGAGATTACACGGTTC	ref_939_RC	35	20	46	36	22	33	14	26	16	29
GAGACTACGCCTTAGC	ref_939_RC	149	73	176	169	73	138	110	124	95	115
TTGCTCCTGTAGCGGT	ref_939_RC	0	0	0	0	0	0	0	0	0	0
GCTAGTAGCTCTGGTT	ref_939_RC	422	188	521	439	214	385	246	370	228	400
CGCGCAGCGCTGGTAA	ref_939_RC	0	0	0	0	0	0	0	0	0	0
AGACACTCAATTTTGG	ref_939_RC	23	10	23	18	12	16	10	19	9	21
CCATCACTATTGATTT	ref_939_RC	60	51	99	79	55	59	56	70	56	74
TCTAGCTAGATAGTTT	alt_939_RC	41	18	41	40	30	48	27	40	29	41
GCTGAGGGGCTCTATA	ref_939_RC	98	42	125	96	44	108	65	110	57	102
TTCAGGGAATGATGGT	ref_939_RC	125	94	140	154	70	148	68	120	58	127
TTTAACTCCTTGTCAG	ref_939_RC	73	62	71	62	61	47	48	54	60	56
CTATTGTCGTGGGTTC	ref_939_RC	0	0	0	0	0	0	0	0	0	0
CTCCACCGATTGTGAA	ref_939_RC	109	46	109	76	60	85	45	87	58	88
GTACTTTAGCGCCGGT	ref_939_RC	164	77	171	146	70	127	78	146	68	143
GTTTGCGCGGTGTTTT	ref_939_RC	0	0	0	0	0	0	0	0	0	0
TTCCTCCGCTCTGCCG	ref_939_RC	121	48	100	101	53	78	73	91	59	74
CGTGGTCTTAGCGCTC	ref_939_RC	42	37	77	40	25	38	23	35	24	39
TTAGATATGCGCAATC	ref_939_RC	325	131	380	308	125	289	148	283	138	238
GACGTTACGATACATA	ref_939_RC	26	21	29	28	10	36	15	29	18	35
GCCAGGGACTTTAAGT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
ACGTCACAATTTGAGG	alt_5858_new	11	29	25	17	28	17	31	19	27	21
TAGATCTTGGAATGTG	alt_5858_new	13	25	16	22	25	15	40	13	31	20
CACCCGGGTAGGCCAC	alt_5858_new	6	13	14	9	11	10	11	7	14	9
GGCCCAGTTATTACTT	alt_5858_new	13	11	13	24	27	12	19	11	30	10
TTTCCACTCTACCGTA	alt_5858_new	49	140	77	53	150	40	166	32	154	36
GGATTATAAATCCGAG	alt_5858_new	1	2	3	0	7	5	0	1	5	2
CACTTCATCAATGGTG	alt_5858_new	14	26	27	20	26	11	33	19	20	21
CTGTATGACAACGCTT	alt_5858_new	20	50	30	28	58	21	49	21	46	33
CAGTGATTTAACCTCG	alt_5858_new	44	69	39	37	63	37	74	31	76	40
AACGCTGCAATCTGCG	alt_5858_new	2	4	3	0	1	1	6	2	5	2
CTCCTTTTGCCCACGC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
GAGACGGTTAAGAGTT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CTTGTCCGTGCTTGGT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
GGTCCTTGTCCACAAG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CTATTTTTTCGTGCCA	alt_5858_new	17	22	18	10	25	20	26	16	23	14
ATATGCGATACTTTAC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CTTGTGTTGGTTTATC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TCGTTAGTTTTGGTAG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CTCCGGGTGGTACTGA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TGAGTCGTGTCCCCGG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TGCGGTGATTCCCGAC	alt_5858_new	18	24	21	16	21	19	29	16	17	12
CTTATGGCTCACGACG	alt_5858_new	2	7	1	3	4	2	5	4	1	3
AATCTCACGATGTGTC	alt_5858_new	23	28	35	14	26	9	18	13	25	16
CATGACGGTACAAGAG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
ATAACGCCAACACTAT	alt_5858_new	27	22	30	14	23	15	30	20	30	21
GCTGTTAGCCCTCTCT	alt_5858_new	9	24	16	10	19	11	14	10	13	16
TGACCTTATAACTGTA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TCGACACCACTTATGG	ref_5858_new	112	137	141	112	187	117	199	115	168	107
TAAGTTTATTGGGTCG	alt_5858_new	174	313	223	190	327	154	354	170	315	195
GTGCAATCTTACTCCC	alt_5858_new	66	189	97	64	173	67	162	68	171	42
GTATACTTTTGGAAGA	alt_5858_new	19	43	30	16	28	18	38	9	53	25
GCGAACTCACAGTTTC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
ATTGCGTCTTGTAGTT	alt_5858_new	17	37	18	12	23	16	31	18	21	23
CGAGGCGACTCAATTA	alt_5858_new	3	7	6	2	6	6	7	1	3	3
CCTAAGGGCGCTTAGT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TGCCTTTAACGGGCGG	alt_5858_new	3	5	8	2	8	4	7	3	8	6
CCGATTCTTGCGTACT	alt_5858_new	6	10	5	7	14	6	8	6	10	6
GTGCATTGTTGTTTTA	alt_5858_new	9	22	5	3	10	3	14	4	9	4
ATGCTCTGTTATTCTT	alt_5858_new	10	10	8	9	16	8	12	6	10	11
TTCGCTTGTACCAGCT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
GTTGTTGCATATCCCT	alt_5858_new	43	71	91	47	76	67	79	41	92	46
CTAGCTAACGACTTTC	alt_5858_new	6	3	2	4	8	2	7	4	7	6
GACGGAAGTCGATTCG	alt_5858_new	7	7	10	3	0	6	10	7	15	4
TCCGCTGTTACTCTTC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
GGTCTATCGCAATAAA	alt_5858_new	32	42	44	27	68	28	42	38	50	25
CGCCAGGCGTGTTTCG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CACTGGTGATGTGATG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CTCCGCCTCACAGCAT	alt_5858_new	27	63	41	45	54	29	67	33	63	36
TCAAGAACCCTGAGTC	alt_5858_new	9	22	8	9	22	16	20	9	23	4
TGTTTTGATCACAGTG	alt_5858_new	41	82	63	40	83	54	73	46	82	42
CCGCTTTCAACCGCGA	alt_5858_new	8	6	10	6	15	11	15	13	8	8
GGTGACAATATCTACA	ref_5858_new	404	590	465	412	607	383	588	360	632	365
GTGTACCTACAGATTG	alt_5858_new	35	55	46	35	61	26	60	33	62	35
TGTAGACATCGTCTCT	alt_5858_new	21	36	41	35	42	28	51	23	37	34
CGCGTAAGTGTTGCTA	alt_5858_new	47	54	47	40	96	36	75	31	90	40
CTATACCGCCAACCCA	alt_5858_new	0	0	0	0	2	0	0	0	1	0
CTTAATAGCCGCGCAC	alt_5858_new	33	53	49	33	67	32	70	45	62	45
CCCTGGCAGTTTAGGC	alt_5858_new	4	5	7	1	5	3	3	4	4	3
CTTTCTTGGTCCGTAA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TTTCGTAATCTGATAT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TAAACTGGTATTTATG	alt_5858_new	38	60	38	47	56	48	51	25	47	38
GTTATATCCTAGGCTT	alt_5858_new	86	128	99	78	143	85	141	65	146	63
TACGTAAGTGGGTAAA	alt_5858_new	75	108	96	72	128	106	125	73	133	60
CTTCGATTTGTACACA	alt_5858_new	14	50	17	15	28	8	28	12	27	16
TCACGCGGACTCATAT	alt_5858_new	8	3	0	0	4	1	3	0	1	1
GCTTGGTACTTGTTCT	alt_5858_new	35	56	36	46	57	32	51	39	63	40
TCTCTTTGCGTACTCC	alt_5858_new	45	51	35	34	44	29	69	22	68	25
TCATTCAGCTTTAGCA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
ATGAATGTATGCTAAC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CTACTCGATATGCGCG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CCTAAGGAGTGACTGT	alt_5858_new	179	341	209	203	347	210	354	155	391	149
TAAACCCTAACTCTTC	alt_5858_new	11	6	8	3	11	4	7	4	10	6
TCCTGGATTTCAATTT	alt_5858_new	11	13	9	8	14	16	19	12	17	8
TTCTTCCCTACTGGTC	alt_5858_new	48	92	72	47	98	49	92	61	118	42
GCCCTTCGTGCGTACA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
AGATCTCCCTCGGTAC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TGGTCTTTTGGCTGAT	alt_5858_new	93	140	102	60	135	88	165	76	150	86
AAATGTGGCACGCAAT	alt_5858_new	11	21	29	9	18	17	32	15	26	10
TGTTTATATTCTAGTC	alt_5858_new	3	3	0	2	2	0	5	2	2	4
TGTCCCTGTACTCCGT	alt_5858_new	57	82	69	55	93	58	77	64	92	49
GGTTGCCCCAGTTGGT	alt_5858_new	44	78	61	53	56	41	76	33	69	37
TACCCTACTTGCGTCG	alt_5858_new	192	242	224	169	300	159	294	164	306	161
CGACTGTACACCGACC	alt_5858_new	1	19	8	4	18	4	16	7	11	2
TCGGGGGCATTTTGGA	alt_5858_new	29	58	72	48	74	40	67	42	80	54
TGACATGCTATGATGG	alt_5858_new	34	41	37	33	55	38	45	34	60	21
CAGTCAATGAAGCATA	alt_5858_new	179	256	194	159	264	158	298	156	317	147
ACTCTCCGCGATCTCC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TACCCGTTTTTAGCTT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TGTGGTGTGACGGGGC	alt_5858_new	42	54	48	42	65	40	58	36	51	39
CACCACTCCGAAAATC	alt_5858_new	11	10	15	9	21	14	17	8	13	10
GTAAACCGCCAGTAAA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TTCCGGGAAACGCGCC	alt_5858_new	0	1	1	1	3	1	0	0	3	0
GTACATCTGTCTGCTT	alt_5858_new	29	34	32	42	38	15	49	25	44	25
TTTTGGTCATTAGGAC	alt_5858_new	9	11	4	8	9	7	8	5	19	7
AGGGCATCCCTTATTT	alt_5858_new	35	66	47	35	55	42	65	42	75	32
TTGAATAACTTTCGCC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TGCATTGACGTACTAT	alt_5858_new	65	90	76	64	84	54	84	45	90	44
TCGTTGAGGCACGTTT	alt_5858_new	4	12	15	8	10	8	14	7	6	10
CACTAAACGTGCTCTG	alt_5858_new	49	85	51	44	85	57	85	43	65	42
CTACAATACGACCATG	alt_5858_new	22	48	20	17	36	17	54	21	53	17
AAGCTGCTGCACACTC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
ACTCAGTCGTTCCTGC	alt_5858_new	10	22	14	15	19	12	16	9	18	12
ACCCGGTTGATGGTAA	alt_5858_new	32	58	32	22	50	32	64	28	53	32
TGAATACTAGCGATGA	alt_5858_new	8	26	26	25	28	16	25	21	32	22
GCGAGAATAGTGCTAT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
AATGTAAACGTGGGTT	alt_5858_new	47	63	37	53	52	38	69	41	86	36
CACATGCCATCGGTAA	alt_5858_new	4	5	3	2	3	5	8	7	5	3
TGTGGGAAGTCCAGCT	alt_5858_new	37	69	42	47	61	38	63	46	77	38
CTGCTTGTGGTGTTTT	alt_5858_new	47	50	44	32	55	42	68	34	81	33
GTCCGGTAGGTGATTC	alt_5858_new	4	3	0	3	3	2	6	1	2	3
CAGAAATCGGTTATTT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CCGTAGCGAGCTTGCC	alt_5858_new	4	9	1	1	13	4	5	2	16	3
CAACGACTGGCTCGTC	alt_5858_new	35	39	32	35	40	23	33	7	48	20
ACGGTTCGGGAAATTC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TATTGAAACCTCCGCA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
AGTTAAGGTCATATTT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
GCTATGAACCTCAAGA	alt_5858_new	0	5	2	0	4	6	3	7	1	1
AAACCGCAGCCCTCTG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
GTTGGTCTTTGATGTC	alt_5858_new	16	32	23	17	59	24	60	20	65	33
GACTATAAGTAATGAG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TCGCGATGCCTTTCCA	alt_5858_new	80	154	63	79	121	68	94	66	130	75
CTTTCGCGTGCCATGG	alt_5858_new	7	9	11	12	14	15	16	11	27	5
AGTGAATATGCGCAAT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
AATTAGCATCCACGTT	alt_5858_new	22	48	38	26	54	27	47	29	65	32
TCGCCAAGTAGTAGAT	alt_5858_new	13	19	9	7	20	4	24	7	19	8
GAGCATATCGTGCATA	alt_5858_new	7	7	10	8	11	2	8	2	9	4
GCGCAGGGCTTCCATA	alt_5858_new	0	0	0	0	0	0	0	0	0	0
AAGGTGCGGCTTACTT	alt_5858_new	23	42	28	39	52	24	41	21	35	29
GCTGTCAATGTCATGC	alt_5858_new	10	26	14	6	24	18	20	10	30	14
ACTTTACTCCCGTTCG	alt_5858_new	7	42	20	13	35	13	49	7	55	12
TACCTACTTAGGCATG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
ATCAGATTGTTTGCTC	alt_5858_new	190	262	199	176	263	139	296	174	244	155
GGCTAGTCTTCCACAT	alt_5858_new	12	17	12	9	22	13	24	7	20	5
AGGCACCAGTCAACGC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
ACATTAGCGTATGTCT	alt_5858_new	3	7	4	4	6	2	8	6	8	3
CGTATCGCTATGTCGA	alt_5858_new	71	89	75	76	69	42	93	56	85	72
CGACGCTGGGGAGTTA	alt_5858_new	9	6	17	6	14	6	12	7	13	11
ATGTAGGGATGGTAGT	alt_5858_new	4	4	5	7	14	4	11	8	6	4
CGTGTCCTTATATCAG	alt_5858_new	8	13	11	7	17	6	16	11	33	11
CCCATTATGCTTTCAC	alt_5858_new	21	45	21	13	48	24	54	23	47	29
AACGTCCGATAGCCTC	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CCCAAGTCCTGTTAGA	alt_5858_new	12	46	21	22	52	8	53	16	40	12
GTCGTAATAACCCTAA	alt_5858_new	23	24	10	15	19	14	23	14	17	6
CGGGGGCAATACTTCG	alt_5858_new	19	21	23	22	29	18	27	13	31	13
TTATTCCTCGCGATAT	ref_5858_new	65	72	71	65	66	59	89	56	72	51
GCCAGGAATTTCCAGT	alt_5858_new	16	48	16	21	33	17	29	24	53	19
TCGTTATCATCTGCAG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
CATTCGATCCTTTTTG	alt_5858_new	70	79	94	61	109	75	83	61	109	71
GCTTAGGGACCGTGGC	alt_5858_new	25	54	39	38	41	27	46	31	45	36
TACTGTGTCCATCTTG	alt_5858_new	1	2	4	1	1	2	3	1	5	2
TCTGAAAGTCGTTTAC	alt_5858_new	42	73	50	50	67	41	54	33	71	23
CTGCTAAACAGCGCCT	alt_5858_new	0	0	0	0	0	0	0	0	0	0
GCATTACGGAATACAA	alt_5858_new	52	82	57	52	78	40	75	32	82	46
TTTGGTTCACCACCGG	alt_5858_new	11	22	13	3	4	12	9	3	19	4
TGATTGGTCATAACTC	alt_5858_new	0	13	6	5	17	7	13	13	20	5
TAACAGGTACTGAGTG	alt_5858_new	25	65	50	37	59	30	60	37	62	41
AGATACCGAAGTTAGG	alt_5858_new	0	0	0	0	0	0	0	0	0	0
TTCTGGTCCTATACCA	alt_5858_new	0	1	2	0	1	0	0	0	1	0
TCATACTGGGAACATA	alt_5858_new	23	46	51	38	40	40	53	34	51	30
CACGTAGAGGCAGTCT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
AGGCCACGTTCATATT	alt_5728_new	51	47	63	52	63	48	59	41	60	44
CGCGTTGTCTGTAGTC	alt_5728_new	75	79	89	76	63	60	72	58	71	64
AGGGCCTCTCGCTGGA	alt_5728_new	194	215	237	171	205	164	220	184	196	179
TTTCCGATAGTTATAC	alt_5728_new	26	17	19	21	35	18	31	13	42	29
GTTTTTTTGCATGGGT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
ATGTCTTGCATCGAAA	alt_5728_new	0	0	0	0	0	0	0	0	0	0
AGGTAGATCTTCGTGC	alt_5728_new	0	0	0	0	0	0	0	0	0	0
CACTCTCGTTAATTTT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
TTCGGATATTTCCTTA	alt_5728_new	39	37	23	34	22	30	29	42	23	31
AGTTTGAGTAAAAAAA	alt_5728_new	14	10	6	15	15	11	16	9	11	8
ACACACTTTGACAGTC	alt_5728_new	1	1	7	8	1	4	4	2	2	1
TTTAGGAGTGGTTGCA	alt_5728_new	15	11	12	14	17	13	20	8	16	14
TTGTTTTGACAGAGAA	alt_5728_new	8	12	13	12	14	14	7	12	7	16
GGTTTTTATGACTGCA	alt_5728_new	14	17	19	22	23	25	25	19	30	24
TTCCAGCCCACCCTAA	alt_5728_new	31	25	36	41	32	27	22	25	35	38
TAGGTCTCTATGTTAG	alt_5728_new	32	66	43	31	46	21	42	30	75	32
TCTTGCTTCGTTGTCT	alt_5728_new	80	102	84	84	114	105	106	77	114	66
ATCTTACCAGTAGGTG	alt_5728_new	9	26	15	8	14	19	18	7	14	5
CCTACCATGCGGTCCC	alt_5728_new	0	0	0	0	0	0	0	0	0	0
TCCTTATGCCTTTCTC	alt_5728_new	10	5	6	10	5	9	6	12	5	4
ATCGGCCTTCAGCATT	alt_5728_new	3	1	4	4	3	4	3	2	1	1
CTTTTAGCCGCACTTT	alt_5728_new	37	32	26	25	26	14	36	23	38	26
AGGCTAGATTTGTTCA	alt_5728_new	0	0	0	0	0	0	0	0	0	0
ACCTCGTTGCCTTTGC	alt_5728_new	19	18	28	23	25	21	16	17	21	16
ACCCCACGACTGCCCT	alt_5728_new	101	94	123	106	113	114	100	96	106	89
TTGCGAAGGATCTTCA	alt_5728_new	14	13	14	10	19	20	21	10	15	10
ATGCGTAGTTCCAATG	alt_5728_new	16	28	21	17	21	10	15	22	19	20
GAGGGAGCTTATTTAG	alt_5728_new	60	62	81	59	55	72	82	56	90	48
ATTTCCGTCTCACTAC	alt_5728_new	125	152	147	126	138	117	147	82	148	109
CGATTTGCACGTGGTT	alt_5728_new	32	39	30	35	32	30	37	28	39	25
CGGTAGCAATCGTTAA	alt_5728_new	6	10	4	6	13	13	10	5	14	4
CTGACCCTCAGGTTAG	alt_5728_new	41	52	40	33	42	49	56	27	55	44
CTTTGGACAACCGGTC	alt_5728_new	21	22	18	20	33	16	24	20	22	17
GCGAATATGCTGTAGC	alt_5728_new	10	7	15	7	9	12	10	10	4	9
AGTCCATGGGTAGGTG	alt_5728_new	0	0	0	0	0	0	0	0	0	0
CAGCCATACGGGTCCT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
ACCCCACGCCTGCCCT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
GGACGCTATTCACCCC	alt_5728_new	27	41	38	24	48	43	24	24	40	25
TAGGGGGCCCACCTTA	alt_5728_new	0	0	0	0	0	0	0	0	0	0
TGTCTTCCACGTTTCC	alt_5728_new	5	4	12	4	16	6	10	2	11	6
AGCCGGGCTCGCCGCC	alt_5728_new	80	83	74	72	84	82	78	83	94	63
GTCTGGGGATAACTAT	alt_5728_new	20	14	15	15	14	20	20	11	14	22
GCCCTGTATGTTCATC	alt_5728_new	0	0	0	0	0	0	0	0	0	0
GTCGGACACTTCCAAG	alt_5728_new	39	34	41	38	52	37	44	43	46	31
CGTTAACGCTGTCTCC	alt_5728_new	29	28	41	39	30	17	26	31	21	23
GTAAAGCCATGACTCG	alt_5728_new	32	37	39	40	38	36	41	35	27	28
CATGCCTTATTTTGAG	alt_5728_new	5	7	2	2	9	3	10	2	13	11
GAGAATTGCTACTGGC	alt_5728_new	2	0	0	3	4	3	2	2	4	3
CTCTTACTCATTTCGT	alt_5728_new	17	21	21	14	35	19	26	17	34	22
CGCTATCATATAGCCG	alt_5728_new	0	0	0	0	0	0	0	0	0	0
CGGCTAAGCTGCGAAT	alt_5728_new	87	105	100	83	78	84	92	90	102	80
GAGACTCCCCCTACCC	alt_5728_new	23	28	31	30	30	25	38	19	33	30
ATTTTGACTTTTCCAT	alt_5728_new	22	36	29	27	38	29	39	22	28	18
GTGCTAATTCGCCCTT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
GCTGGCGTGTTATGCT	alt_5728_new	43	40	32	21	42	31	47	29	35	24
CATACGGTTCATATGA	alt_5728_new	14	14	14	11	13	4	10	12	10	13
ATACGTATCCATTGGT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
CGACCCATCTCTTTCG	alt_5728_new	38	26	33	29	32	28	34	22	32	26
GGCCTTATATTATAAC	alt_5728_new	23	35	39	20	26	13	23	13	20	9
GTTTTTTTTGCATGGG	alt_5728_new	180	248	181	181	246	197	299	169	242	155
GCGATAATTTTGTTAC	alt_5728_new	12	7	18	14	18	16	16	13	20	9
GCAATCAGGACACCTC	alt_5728_new	3	9	10	8	12	11	17	7	5	7
GATGCTCTTCATTCTG	alt_5728_new	28	21	22	23	17	24	25	21	26	18
AGTTGTTGTATCGTGT	alt_5728_new	22	27	25	20	23	21	22	23	28	22
GGCTGAGTTAAAAAGC	alt_5728_new	37	27	36	23	36	37	39	31	49	26
GAGTCCTGTTATGTCG	alt_5728_new	53	77	83	60	58	66	70	53	67	45
TGGGACAAGTACGAAC	alt_5728_new	28	28	21	31	28	22	18	31	22	23
TATATACTCCTCGTTT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
AGTGCCCCTTTAGTTC	ref_5728_new	21	25	22	24	22	17	25	18	26	16
CCCTGAGACACTTCCG	alt_5728_new	13	8	11	12	22	11	11	10	15	17
TCTTGGTCGTAAGTGT	alt_5728_new	80	76	96	87	99	71	101	76	109	64
CTATGTCTTTTGCCTG	alt_5728_new	17	13	27	18	26	24	24	18	22	9
GGTGTTTCCGTAATGT	alt_5728_new	76	91	125	110	89	81	81	107	98	93
CGGGCCATCCGCGCAA	alt_5728_new	4	16	6	9	25	6	19	5	32	5
CTTGAGGTGTTAACTT	alt_5728_new	0	2	1	0	1	0	0	1	1	2
CAATCGTTACCCGGTG	alt_5728_new	21	13	22	11	7	8	6	19	20	7
CGCACGTGCTTCTCTC	ref_5728_new	41	23	40	43	49	32	36	24	29	19
ATTAGTGGGAAGCCGC	alt_5728_new	8	16	27	13	19	21	28	11	24	13
CAATCGCCTTTTGCGA	alt_5728_new	35	28	40	29	39	29	33	20	45	35
CGCTCATTTTCGCAGA	alt_5728_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTTTTGCATGG	alt_5728_new	0	0	0	0	0	0	0	0	0	0
CCCGGTTTTGACTAAT	alt_5728_new	0	0	0	0	0	0	0	0	0	0
ACAGGCAAGTAAACGT	alt_5728_new	55	80	72	70	70	63	72	58	63	53
AGCAAGAAGGATGCAC	alt_5728_new	26	26	41	33	40	35	45	34	45	25
TGGGATTCGAGCGTTT	ref_5728_new	53	68	64	63	53	52	72	56	70	51
TACAGGAATCTCACCC	alt_5728_new	4	4	7	3	5	2	3	6	4	1
ACGGTATGCGTACGGA	alt_5728_new	65	65	78	72	76	66	74	66	61	72
GGTTAAGTAGGTTCTC	alt_5728_new	99	141	125	103	129	84	127	95	151	118
ATATACCCACTAATAC	alt_5728_new	0	0	0	0	0	0	0	0	0	0
AGCTGTACATTCTATG	alt_5728_new	78	64	80	70	86	71	83	49	93	56
TGTGTTATCGAAGTGT	alt_5728_new	11	22	10	5	17	2	17	15	14	18
CGAGGCCGCCAATTGG	alt_5728_new	0	0	0	0	0	0	0	0	0	0
GGTCGTGCAAATGTCA	alt_5728_new	120	170	192	127	161	157	154	132	190	113
AAAGGTTTCAGTTGAG	alt_5728_new	36	26	32	42	35	31	31	28	23	22
GATATATTTTGCACGA	alt_5728_new	21	32	38	29	22	27	22	28	30	24
ACGTTCATGGAGACCC	alt_5728_new	47	41	60	52	40	50	47	50	35	45
GATAGATGTGGGGGCT	alt_5728_new	26	32	24	23	16	17	26	12	21	12
TTAGCTTCGAATTCGA	alt_5728_new	7	14	14	6	13	11	15	9	8	6
ATCGCACATAGGAATT	alt_5728_new	64	74	79	68	90	52	79	57	70	52
CGGCTGTGATTTCGGA	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TTTTACGTCTATACAT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CATTCATAAGAACGCC	alt_3665_reverse	3	6	6	3	15	5	9	4	18	5
CCCGTACATCCCCCTG	alt_3665_reverse	7	11	3	4	16	4	17	1	15	9
GTTTAACCCGAGCGAC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAGTGCTACTGTT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
GCACTTAAAGATCCCA	alt_3665_reverse	58	73	66	52	60	47	78	39	89	46
TCCTCTTCTTTTGGAA	alt_3665_reverse	10	11	13	5	12	8	24	6	11	11
CTCGCGTAGTGCACCT	alt_3665_reverse	30	45	31	24	51	17	57	32	81	25
TCTAAATTCGTGGGTA	alt_3665_reverse	18	47	19	21	34	31	40	20	36	21
CTAGCCTTACCTCCCT	alt_3665_reverse	27	66	14	17	57	20	47	10	65	31
AAGATCCATATTGTGT	alt_3665_reverse	40	52	46	39	64	35	69	25	75	34
ATTCGGTCTGTTAATG	alt_3665_reverse	13	21	2	4	15	8	15	5	7	3
TCTCATTTAGCTCTTT	alt_3665_reverse	10	31	32	14	51	20	41	20	40	18
GAGCACGCGGAAACTA	alt_3665_reverse	22	28	16	17	37	13	28	25	38	22
GCCGGTATTTAAATTT	alt_3665_reverse	5	10	7	3	5	8	8	3	7	5
GCCTTGAGTCCCGCGG	alt_3665_reverse	4	3	4	4	9	3	11	2	6	6
CGGCCGCTTCGAGACA	alt_3665_reverse	6	11	18	5	23	9	19	4	20	6
CATCCTGTATTCCGGC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTATCTTGTATCA	alt_3665_reverse	5	6	9	7	9	3	6	9	12	9
TTTCGGTATCATAAAG	alt_3665_reverse	3	12	4	11	7	7	9	1	12	7
GAGACAAATGGGGACT	alt_3665_reverse	9	12	11	3	5	6	6	3	3	8
CACCATGGGTAATTGT	alt_3665_reverse	35	42	60	25	53	35	50	20	56	32
GTGGCATGGGGCCTTG	alt_3665_reverse	9	21	13	8	17	9	25	7	15	8
ACGTTACGGATTTTCC	alt_3665_reverse	9	14	8	11	17	8	6	6	22	7
TTACTCCTCACGAGCA	alt_3665_reverse	1	3	1	2	4	3	2	4	3	2
TGTTCTGCAAGTAATA	alt_3665_reverse	17	19	15	15	27	12	22	16	26	11
CGTCTCTCAATCTGAC	alt_3665_reverse	0	4	4	0	0	2	2	1	2	4
GGCGACAATGAGCCTA	alt_3665_reverse	48	79	58	37	74	53	111	29	88	36
TAATATTGTTATGGAA	alt_3665_reverse	10	10	5	12	13	6	10	12	13	4
AGGATAAGTCTGATTA	alt_3665_reverse	6	13	13	7	24	7	16	4	15	5
TTAATTGCGATGTAGT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
GTTTACATTTTCGGGG	alt_3665_reverse	29	49	48	38	45	36	65	29	78	26
TATTCCGTTTTGAGAG	alt_3665_reverse	7	12	6	5	6	2	7	1	2	3
TTGACTTCAGCTAGTA	alt_3665_reverse	2	7	3	0	10	0	6	5	11	4
CGTACCCGCATGGACT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTATCCCTCGTGC	alt_3665_reverse	1	9	4	4	15	1	18	2	17	3
GCTGTCATGAGACAAT	alt_3665_reverse	33	56	39	24	56	35	50	34	70	40
GACCTTTTCCCTGCCG	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTAGGTCTCACGA	alt_3665_reverse	0	0	2	0	0	1	1	0	0	1
TTCGTGCATGTTTCAG	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTACCCCATGTA	alt_3665_reverse	30	82	38	43	93	39	82	48	63	29
TATACTTCTCCTTTAA	alt_3665_reverse	12	20	22	10	24	7	23	7	13	7
TACACCTGGGCGTTTT	alt_3665_reverse	95	249	127	119	229	114	212	94	217	119
AAGGGGACACAAGCAT	alt_3665_reverse	5	11	7	4	12	8	11	6	9	3
TCTAAGTCGTCGTATT	alt_3665_reverse	2	5	2	0	2	2	1	2	3	2
GATAAGCCTTCAGGTA	alt_3665_reverse	7	14	3	5	14	12	10	10	9	6
GTACAACACCTCAACT	alt_3665_reverse	1	3	6	4	17	5	10	3	5	5
AGCGGAGTCTAGCATT	alt_3665_reverse	2	2	10	2	9	5	8	6	26	5
TACGTCCACTATTTTA	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGACTTTATCCGC	alt_3665_reverse	74	125	122	84	122	81	124	76	141	65
CGATTGCGTGCGCGGG	alt_3665_reverse	53	110	64	48	98	65	102	66	108	47
TTTTTGGTTGCAAAAT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGCTAGCGCGAGA	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TATAGTTTCTTCAGCT	alt_3665_reverse	46	67	60	32	63	44	77	53	66	37
TTTTTGGGAGCATGTC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CTATTTCCCGTTTATT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
AAGCACATAGCAAGGC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTCAATAATCGCG	alt_3665_reverse	21	27	26	19	36	18	33	24	37	27
TCACTTACAAAGTATT	alt_3665_reverse	0	1	0	1	2	1	0	0	0	0
AGATGTCGTTGCCTAC	alt_3665_reverse	22	42	22	15	38	31	39	28	38	19
GGAACGGCCCGAAATT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
ACCGAGTATGCTGCTC	alt_3665_reverse	3	6	11	2	10	8	6	6	12	2
TAATTTTAATCTTTAC	alt_3665_reverse	35	61	48	44	40	31	71	37	74	41
GCCGTGGACCTTGCCA	alt_3665_reverse	1	3	6	6	5	1	9	1	7	3
TTAGCAATTAGCCTAG	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCACATGTTACG	alt_3665_reverse	21	48	22	28	34	14	33	25	37	18
AAAGATTGTTAGGGTC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
AATGGTATGTTTTAGT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTCCAGTCATTTA	alt_3665_reverse	3	16	3	2	8	2	24	6	9	3
GTTAGATATCGTTTAA	alt_3665_reverse	0	2	1	0	0	1	0	0	1	0
CTCTACGAAAATGACT	alt_3665_reverse	13	11	17	15	20	16	14	8	14	17
TTTCCGCCTCTTGATT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
AACAAATTATCGGTCA	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCTCAAAACTAGC	alt_3665_reverse	23	47	29	18	33	19	47	11	34	16
TTTGTTTCATTATGGA	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
ACTCCCTCCTTCATCA	alt_3665_reverse	3	23	4	1	8	0	25	4	16	4
CGTTATGGCTCAAAAA	alt_3665_reverse	4	6	2	2	7	4	6	4	6	2
CCCGAATCATCCCACT	alt_3665_reverse	3	4	2	2	4	2	9	1	6	1
TGGTATGCGCTAGACG	alt_3665_reverse	32	72	56	29	74	35	66	24	80	25
ACTGCATTCATTGGCT	alt_3665_reverse	20	49	26	21	35	18	38	18	40	15
TATGACATGTGGTTAT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
GGAAGAGCGGTAGTCC	alt_3665_reverse	11	12	10	13	10	15	11	9	18	6
AAACGTATTGATCCGG	alt_3665_reverse	15	17	20	13	14	16	15	18	21	17
TAGGCCCTCTATGGGA	alt_3665_reverse	11	17	15	10	30	11	38	24	29	16
TCTCACGGGGCCAGCT	alt_3665_reverse	43	96	46	30	75	54	64	51	73	46
ATGTCAGGGGCTATTG	alt_3665_reverse	2	24	15	9	15	9	12	8	13	5
CTCCTTCGCACTTGAA	alt_3665_reverse	52	80	52	29	87	27	87	58	90	29
TCTATCGGATCGTGGT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CATAATTACGTTGTTT	alt_3665_reverse	12	22	12	18	19	11	18	17	20	11
CGGGCAAGTCTATTTC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TATCTGTCTAATAACA	alt_3665_reverse	1	15	10	8	11	8	14	5	16	12
CTCATGTGAACTCGCT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTTAGGCCTGAG	alt_3665_reverse	11	18	14	12	27	13	21	9	32	11
TTATTTAGTTAACGAT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGACGGCCATCGT	alt_3665_reverse	15	27	15	14	25	18	27	12	15	15
TCGGGACTATCGTTCC	alt_3665_reverse	86	150	104	81	158	76	169	65	178	74
TGGCGCCTAAGATTTG	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGAGAAAAATGCC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGTGAGCCTGGAT	alt_3665_reverse	11	12	8	6	4	12	17	4	18	5
ATAGATGCCAGGATAA	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCAGTACGCTACG	alt_3665_reverse	29	45	29	26	46	25	34	22	44	24
ACTCTTCCATGTCTCT	alt_3665_reverse	23	28	17	13	32	9	32	21	18	12
AATTGATTACGTGGGT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CTAATCATTATGATCT	alt_3665_reverse	8	9	4	16	6	15	8	7	12	7
CGTTCACGTGTCCGCA	alt_3665_reverse	19	28	13	9	25	9	23	10	31	13
GGATATATTGATATCG	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
AATAATGCAAGGTATT	alt_3665_reverse	19	31	34	30	35	19	42	15	36	15
ATATGAGCTTGGCGTA	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCCTTCAATATCC	alt_3665_reverse	7	12	9	9	14	5	11	7	8	5
AGGTATGTATAGTCCT	alt_3665_reverse	8	8	4	5	11	5	17	11	7	3
ACTCTATAGGAATTGC	alt_3665_reverse	2	0	1	0	2	2	1	1	1	0
ATTCCTTTTGACAGTG	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTCGCTGTGCAGA	alt_3665_reverse	20	52	26	28	38	24	53	24	41	23
ACTGGCCGTCGAATTT	alt_3665_reverse	6	27	6	4	14	7	8	5	16	15
ACACCGGGTTGGTCTG	alt_3665_reverse	10	6	9	5	7	6	9	3	5	4
ATGCGATAGGAATTTG	alt_3665_reverse	38	58	34	38	59	35	68	41	83	33
TTGTTGCATTGTGTCC	alt_3665_reverse	2	3	1	2	10	0	8	2	3	3
CTACGTGAGATCAAGT	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTAAGCATATTGG	alt_3665_reverse	12	25	13	14	26	16	17	8	19	9
AAGGCAGCATCGGCCC	alt_3665_reverse	105	131	113	91	163	79	146	99	163	72
GGTAACGACGCTGGCC	alt_3665_reverse	8	7	5	7	10	5	12	6	11	1
TGGGCAACAAGTGCGC	alt_3665_reverse	8	8	6	5	6	1	6	3	7	4
CCGTGGTGAACCATGG	alt_3665_reverse	5	54	12	14	78	15	64	10	68	6
CGAACTGGTCCCAGTC	alt_3665_reverse	8	9	2	5	2	6	4	4	11	11
GCCTTCTCAGTAATCA	alt_3665_reverse	54	81	66	58	75	52	96	58	88	56
AACGATTCAATTATCC	alt_3665_reverse	7	10	20	10	10	14	18	9	11	7
GTTTCAACAATGTAAC	alt_3665_reverse	12	18	14	13	28	11	9	8	9	10
CCGCTTTGATCCGGCG	alt_3665_reverse	4	15	9	10	10	7	9	11	18	3
GAAGCTCGGTGTAAGC	alt_3665_reverse	7	8	4	8	7	5	7	2	16	5
CAAATAATACGGTTTC	alt_3665_reverse	10	14	9	8	13	7	21	6	20	7
CTAAGAGAGACCGTAC	alt_3665_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGGAGCACTTCAC	alt_3665_reverse	19	71	33	15	64	15	61	7	94	17
TATTTATGGATTAGGG	alt_3665_reverse	107	155	120	118	154	93	184	86	195	97
GTCACAGCTGCAGTTG	ref_5693_new	147	65	163	124	73	140	84	146	79	120
TCCAGCCAGAGCCTGT	ref_5693_new	12	16	17	23	17	13	14	17	17	12
GTTGACGACCGGACAG	ref_5693_new	0	0	0	0	0	0	0	0	0	0
TCATAGCGTCTGGTTC	ref_5693_new	186	89	252	215	87	183	82	196	87	162
GCGCATCGTAAAACGG	ref_5693_new	265	115	337	293	128	230	118	264	119	235
TTCCTGTGGGGATATT	ref_5693_new	38	20	50	44	19	40	15	50	16	36
CGTCTTGTCTAATCGG	ref_5693_new	69	38	83	54	32	55	32	75	32	64
TAAACTCCGTGCATTC	ref_5693_new	74	19	79	88	27	62	22	69	40	59
TGTGACTGCCCTGTGA	ref_5693_new	44	23	54	44	15	50	11	42	19	35
AGTGGTCAGTGTTCTA	ref_5693_new	32	9	30	28	8	25	8	24	13	18
CCACATGGGCGGCGAC	ref_5693_new	313	174	396	344	151	290	166	285	164	291
TGCAGCTACTTTGCTA	ref_5693_new	196	90	248	195	87	200	72	174	83	163
CGCTGTGTTTAATTCC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
AGAAGTTCTACCCACT	ref_5693_new	38	16	60	43	20	40	22	46	22	33
AGATTATGCTAGATAG	ref_5693_new	63	33	88	72	28	51	37	60	23	69
GAACGTCCATGTTCAC	ref_5693_new	36	12	48	32	12	23	20	32	23	21
GCGCGAGCATCTACTG	ref_5693_new	201	78	253	246	82	190	75	178	80	190
AGGGTCCTATCTAGAA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
ATGCATGTGCACATCT	ref_5693_new	41	22	48	49	19	48	27	27	33	42
TTGTTTCTTTATTGAC	ref_5693_new	61	31	63	70	23	50	18	41	34	44
CACTTCAACATCCTTT	ref_5693_new	218	79	298	267	107	218	124	237	103	216
TTAGGGCCTGAGCGTA	ref_5693_new	42	20	55	58	23	31	18	45	14	46
CACTGTTAGCTGCACT	ref_5693_new	25	4	27	28	19	13	9	29	11	18
GTTAAGCCCGTTCACT	ref_5693_new	48	23	37	44	19	35	8	28	22	33
GCGCAGGTTTCGGGGG	ref_5693_new	86	24	120	94	32	107	33	96	32	82
GAAACTCCTGTGTTCT	ref_5693_new	76	17	75	75	17	50	25	50	25	37
ATCATTACGCTGGGTA	ref_5693_new	72	29	92	83	26	87	32	88	31	58
GAATAACGGCGAAATC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GATCAGGTCTGAAAGG	ref_5693_new	1	2	1	3	1	1	1	1	1	7
AGCGTCTTGGAAGCCC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
ATTACATTGTCAGCAG	ref_5693_new	52	18	47	30	21	47	15	49	19	33
ATAGTTACCTTGTTTT	ref_5693_new	107	50	118	93	43	97	44	95	39	103
TGATCTGGAACTTACC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GCCTCGATCGACCGGG	ref_5693_new	45	30	58	57	33	46	27	40	35	40
CGCTCAGTACGATCAG	ref_5693_new	165	97	242	222	91	182	72	191	86	143
TCCTGTAAGACAACAA	ref_5693_new	43	17	34	38	8	44	21	31	6	41
ATATTCTCAGTTATGA	ref_5693_new	115	31	159	101	44	100	66	106	41	121
TCCTCCTAGGTGATTG	ref_5693_new	148	86	206	177	85	132	82	150	70	143
TTCACGATCCATGGTC	ref_5693_new	13	2	14	17	7	5	8	11	10	9
TGTCATAACGATTCAA	ref_5693_new	134	37	150	129	51	112	66	135	56	130
GTTGAGTTCTGGCTAT	ref_5693_new	57	24	66	48	30	48	31	36	27	39
GTGCACCAGTATTATT	ref_5693_new	23	6	24	32	17	23	14	29	26	21
CTTTGTAGCATGAGAT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GAGATCGCCTTCAGCT	ref_5693_new	9	5	8	14	3	7	3	11	1	4
CTTATGATAGGCACTA	ref_5693_new	72	44	98	99	34	86	35	86	50	85
TTTTTTAAACGATTGT	ref_5693_new	1059	494	1354	1221	503	1070	553	1013	501	879
CTAAAAACGAATAATA	ref_5693_new	56	24	58	64	22	41	24	40	21	41
TGATAGGTTCGCGTGC	ref_5693_new	134	62	175	136	54	134	81	124	58	103
TCTTGAGCGGTAACCT	ref_5693_new	26	8	30	26	6	30	11	14	10	24
ATCACATTCGTTGAAC	ref_5693_new	165	81	205	225	107	150	86	162	70	168
AATGTTGTGGTTTTGA	ref_5693_new	52	19	65	58	15	41	15	60	18	50
TTGCTGTCCTATCGGC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
AGTGCGAAAACGAGTC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CCCCCACGCGCCTTTG	ref_5693_new	100	45	102	112	41	82	46	82	55	73
CGGCCTGTGAGCCCAT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GGGTCTTTTTCCGGAA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CGGACATGTCTCAATT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
ATACTCATCGGGATTT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CACTCGTTCTTCCACG	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CCCATACTTCTTTAAT	ref_5693_new	97	38	126	95	38	61	40	90	40	76
AATCATATCGTAACGG	ref_5693_new	275	93	320	293	110	266	88	229	140	204
GTTCCTAGCAATGTCT	ref_5693_new	68	37	111	75	39	78	46	103	60	75
ATTTTAATTGTGTTGA	ref_5693_new	227	121	284	248	120	217	117	235	129	234
CAGGTTGAAATTAGTG	ref_5693_new	22	5	19	17	10	20	12	16	7	15
AATATTAAACACCACA	ref_5693_new	49	10	48	60	11	36	24	51	36	45
AGCAGGTATACGTCTA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
ACACCGTTCTTGCCTG	ref_5693_new	41	19	64	52	17	40	22	53	25	57
CTGTCGTGAGTAAAAG	ref_5693_new	11	6	19	15	4	4	1	8	1	11
TTGGGGACAACGTTAT	ref_5693_new	21	5	30	27	6	23	10	17	11	23
AGTACCCACACAAAAA	ref_5693_new	58	44	73	84	34	60	31	66	32	67
ATGTGGATCGTGTTTT	ref_5693_new	9	8	11	8	5	9	6	5	2	10
TGACACCGATGCATTA	ref_5693_new	36	10	42	46	25	32	14	38	15	37
TGGATGAGCACGTAGG	ref_5693_new	27	29	61	46	15	34	21	35	14	47
TGACATAGCCGTCCTT	ref_5693_new	15	1	19	11	7	5	4	7	9	5
GTAATTCTCAGCAGCT	ref_5693_new	179	71	266	211	89	175	118	176	99	192
TCGTCTTTGAAGTAAG	ref_5693_new	76	33	110	82	37	86	33	71	47	65
CGTGGGACTAATCACG	ref_5693_new	133	50	172	141	61	137	43	132	60	132
TATACGTCCGTTGTAC	ref_5693_new	87	27	67	82	27	58	36	65	45	56
TATACGAAGGTGCTTC	ref_5693_new	32	19	56	44	10	38	12	33	16	30
CTTTTATGAGTTGCCA	ref_5693_new	60	23	85	84	35	68	18	66	23	65
GCCAGTTCGGTCCTCA	ref_5693_new	103	45	144	120	71	110	61	112	43	75
CGATTATCGTAGTTGC	ref_5693_new	91	50	94	100	45	89	33	54	34	88
GGGTGCAAGGGCCATT	ref_5693_new	351	157	422	404	144	284	163	319	146	324
CCCATAAGTTTTGTTT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
TACTATTCCACGTCGA	ref_5693_new	34	24	51	42	15	30	20	20	13	26
ACTAGCCCGTGTATTC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GAACGCGGTGCTGCTA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
ACTGTAAGCACCGACT	ref_5693_new	1	2	0	3	0	1	3	0	1	1
TCCTCGTACCTTCATT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GTCATTTCTGTTCCCT	ref_5693_new	13	8	34	21	10	19	8	33	6	15
ACACATGCTATATTAC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GCCTAACGGTGCTTCA	ref_5693_new	20	8	20	29	6	17	6	17	9	11
AATATTAGGTGGGACC	ref_5693_new	113	36	144	135	50	132	36	85	51	94
CCGGCATGTTATTGTT	ref_5693_new	65	42	90	77	37	48	56	63	57	63
GGCAAGATGAGGAGCA	ref_5693_new	69	13	73	71	22	61	26	55	20	41
CGTCGTTGCTAGGCGA	ref_5693_new	28	13	19	29	18	39	13	24	9	26
TCTATGACTATTACAG	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GGACTGCCGTTAACTC	ref_5693_new	15	10	31	18	7	13	9	19	8	21
CCTATTTGGGGTTCAT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CATTTGCTTACTGTCG	ref_5693_new	61	35	78	111	42	69	41	85	42	62
ATAGTATCAAGCCTTT	ref_5693_new	249	95	328	291	117	225	111	224	130	187
TTTCAGTTTATTAAGA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CGGATCAACGGGCCGT	ref_5693_new	156	44	176	176	66	146	71	128	49	129
TGACAATCTTCCCTTC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CACATGTCACGTGGAA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GGATCCTCTGGGTACA	ref_5693_new	211	69	287	242	67	199	84	215	75	181
CGATTTCTGTGCCTCT	ref_5693_new	31	28	43	26	20	25	17	31	21	21
GGTTTCTGTGAGTCGC	ref_5693_new	8	3	10	15	2	11	1	8	3	4
CACACTATGTAGGTTA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GAATGTTGGTATAAAG	ref_5693_new	79	35	95	82	32	84	34	71	35	70
TCCTAAAACGATGGGC	ref_5693_new	205	111	252	223	129	180	115	201	96	182
ATTTAGCGTCGTCCCC	ref_5693_new	77	21	99	75	40	59	38	78	32	71
AGGCGATCTAGAACAG	ref_5693_new	0	0	0	0	0	0	0	0	0	0
AGCACGTTCGGTTGCT	ref_5693_new	225	138	267	256	115	238	123	231	117	201
ACATTGGGTCCCTCGC	ref_5693_new	23	19	34	16	6	26	9	18	7	14
AGTGTTTCCTCTTCTG	ref_5693_new	24	12	21	20	20	17	10	22	10	25
TTACTGTGACCCTAAG	ref_5693_new	16	8	35	29	9	24	16	23	11	16
CTAATTGCTGTCTTCA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GTTAAGTGTTCTTTTC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GCAGCTTCTTAATGAT	ref_5693_new	25	11	25	17	7	19	15	22	7	10
CCCCGAAGTCAGAAGT	ref_5693_new	9	7	15	15	11	12	15	13	7	13
GGGAGTCTCCGTGACC	ref_5693_new	22	13	21	25	12	18	9	24	11	28
ATCCCATACCCGTTGG	ref_5693_new	111	51	118	91	44	109	44	80	57	86
TTAGACGCAGCGGATC	ref_5693_new	236	100	271	277	100	208	103	241	119	199
GGTTGCGCATAGCGTC	ref_5693_new	42	12	53	52	17	37	12	38	13	25
AATTCTAGGCAGTACC	ref_5693_new	11	9	26	23	3	13	13	16	6	15
GCTCGACCACCTCGTG	ref_5693_new	201	93	285	267	92	205	119	188	95	197
ATGTCACGGTACACCA	ref_5693_new	16	6	31	28	4	22	13	10	9	20
GAGGGATGATAATAAG	ref_5693_new	194	86	258	242	68	170	70	211	122	190
ATTGGTACGCGCCCCT	ref_5693_new	97	42	85	65	44	56	42	75	46	55
GGATCGTCCTGCGTTT	ref_5693_new	14	5	25	17	7	9	6	20	7	20
CTTTTATCTTCTACTC	ref_5693_new	139	41	116	126	53	131	47	113	41	132
GCCCGTTGATTAGAGT	ref_5693_new	61	41	90	72	50	78	27	65	44	56
ATCATTTCGTCGACGG	ref_5693_new	85	34	71	82	36	79	30	68	39	66
TACCTCTATTTCAATC	ref_5693_new	10	3	9	13	7	6	5	11	4	7
GTGTGCGCGCCCGCGA	ref_5693_new	0	0	0	0	0	0	0	0	0	0
CCCACGTTGTGTGATT	ref_5693_new	2	3	5	3	6	0	1	0	2	1
TACTCCCAGTTGGAGC	ref_5693_new	10	17	15	13	14	9	17	14	19	12
GTATCTTTGTAAGACG	ref_5693_new	32	18	54	44	25	40	19	25	17	28
GAACCACCACGTCACT	ref_5693_new	100	49	120	97	57	88	32	84	42	91
CAAACGCGCTCCTATC	ref_5693_new	0	0	0	0	0	0	0	0	0	0
TAAGAAGTCACTGTCT	ref_5693_new	37	24	30	36	21	36	17	31	18	30
AGGTTATTAATTGGGT	ref_5693_new	0	0	0	0	0	0	0	0	0	0
TTGTGGGGAGCACGGA	ref_5693_new	4	2	6	7	1	9	4	3	3	7
CATAGCAATCCGTATG	ref_5693_new	20	13	29	30	10	17	12	20	19	17
TAAACTACCGTTTTGA	ref_5693_new	108	41	132	108	38	127	47	105	43	96
TTCTCATGATTCCGCG	ref_5693_new	290	124	341	240	123	281	136	264	148	240
CTTGTTTCACGTTGGG	ref_5693_new	0	0	0	0	0	0	0	0	0	0
GTTGTATCTCTCTATA	ref_5693_new	75	20	76	91	32	79	29	69	37	73
GAGGGGCTCGTTCTCC	ref_5693_new	38	22	63	54	15	34	23	47	20	41
GCTGATAAAGATCTGT	ref_5693_new	57	31	62	55	19	55	31	57	25	45
TCAGCTCTGTAGCTCC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
GTTAGCACTCGTCTTT	alt_6059_new	0	4	0	3	6	0	2	0	2	0
TTTACCGGTATTGCAG	alt_6059_new	85	159	111	79	142	72	153	78	176	76
TTAGTTAGGCCGCTTT	alt_6059_new	9	19	12	23	17	12	27	15	24	13
GCGCGACCAATCTGCC	alt_6059_new	10	18	20	16	25	7	35	7	22	5
CGCTTCGCTGGCCCTT	alt_6059_new	35	81	58	63	91	60	90	46	77	36
ATGAAGCGCAATACCC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
GGCTATGTTCATTACT	alt_6059_new	7	17	12	2	9	6	9	5	11	4
GGGTAGTGTGGTTCCC	alt_6059_new	18	21	21	17	29	17	27	8	32	5
GACTTTCCAACACGTC	alt_6059_new	15	32	30	21	30	16	47	9	36	7
GTTATTGTCATGGGCT	alt_6059_new	0	0	0	0	0	0	0	0	0	0
AGTGCTACCGTGCATT	alt_6059_new	4	10	8	5	9	12	13	4	11	4
CAGATATAATCTCCGG	alt_6059_new	5	7	3	3	7	8	6	4	12	2
ATTTTTAGGGTGGATC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
GAAATTTTACGGTCTG	alt_6059_new	56	87	59	53	86	56	84	45	83	48
TTACTTCCGTCCCGTA	alt_6059_new	0	0	0	0	0	0	0	0	0	0
TAATTCCGCAGCTCTG	alt_6059_new	6	22	6	11	8	6	11	11	16	7
CACGTATGGTGTGAGC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CTTTTGATAGTTTAGA	alt_6059_new	3	18	6	8	16	10	24	7	18	5
GGCACACAAGTGAGGA	alt_6059_new	0	0	0	0	0	0	0	0	0	0
TAAAATGCTTAGGTTG	alt_6059_new	4	15	3	1	7	1	8	5	1	2
GTTCTTAAATTCCCGG	alt_6059_new	0	2	1	3	1	2	0	1	1	0
ATGGGGATTATAATGC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
TAGATTGTCCTCCGGT	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CCGGAATAATAAAAGG	alt_6059_new	8	14	10	8	11	5	20	7	8	6
TTGTAACGCTTATTGC	alt_6059_new	9	22	9	7	20	19	17	4	13	9
TTACTGATGCTTTTCC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
AAGCTATGATCGATAA	alt_6059_new	0	0	0	0	0	0	0	0	0	0
TCAATTGAAAATAGGT	alt_6059_new	19	28	18	17	23	23	40	23	25	17
GTGAATCGCTCCACAC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
TGGATCATGCTCTCGG	alt_6059_new	13	27	23	14	24	17	26	13	33	10
GGTGGGGCTATTCTTA	alt_6059_new	17	41	26	22	38	13	33	22	29	18
TGTTTGTTCCGTCATG	alt_6059_new	35	71	46	37	84	43	58	49	86	41
TTTTTTTAATCGGGAT	alt_6059_new	9	28	14	13	18	11	26	15	28	12
TAGCTTTTATCAAATC	alt_6059_new	30	47	30	23	53	26	48	24	62	28
TTCTGTAACTGCCGCG	alt_6059_new	13	34	21	18	28	15	30	8	33	24
ATCGTATGTCTTATTC	alt_6059_new	44	68	53	43	81	58	69	52	70	47
TCAATCCAGGGTTCTG	alt_6059_new	7	7	13	7	7	7	6	6	11	6
GATGTAGCTCTAGAAC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
GTATTCTCTTTAAGAG	alt_6059_new	0	0	0	0	0	0	0	0	0	0
TATGCGATCTGTATCC	alt_6059_new	5	9	7	5	11	1	10	8	10	6
TTCAAGGGGTTGGGAT	alt_6059_new	38	74	32	24	50	25	61	40	65	20
CGAGTTTGCCCCGCGT	alt_6059_new	10	29	14	21	27	14	38	15	29	7
TCATTTTAGCTCTGGC	alt_6059_new	11	24	30	22	33	16	34	16	25	21
GAGTACCTGCCTCTTC	alt_6059_new	27	50	28	25	49	21	40	21	55	20
GTGGGCCAAGAATATT	alt_6059_new	17	25	6	9	24	14	24	13	28	9
GGCTGGCGTGTTGGCT	alt_6059_new	19	17	9	9	25	18	20	10	27	9
ATTCTGAAGCCTAGGG	alt_6059_new	50	78	37	37	74	40	73	35	63	32
CATCAATTTTCCATCG	alt_6059_new	0	0	0	0	0	0	0	0	0	0
ATGTGGCATGCTTCCA	alt_6059_new	63	79	73	41	105	53	98	59	90	51
TGTTCTCCCCGGGTCT	alt_6059_new	4	35	4	4	32	1	32	3	33	5
AGAATCACTACGATAT	alt_6059_new	0	0	0	0	0	0	0	0	0	0
ACTATAGATGGTTTCC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CTATACATCTCCTCAA	alt_6059_new	6	22	13	8	8	13	8	7	20	13
ACCAGACAGAGGATTC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
ATGATGTCTTTGTCTA	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CATATTCAGGGCCTTC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CTGCACGTCCAGCCCG	alt_6059_new	4	6	7	2	7	6	10	8	16	11
CTTGCTGCCTCGAGCG	alt_6059_new	6	21	20	10	21	14	20	8	17	6
TTCAAAGTGGAATAGT	alt_6059_new	10	27	13	14	23	25	45	14	31	12
TGCGTGGGCGAAGGGT	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CCTGGGTAGCTTTTGG	alt_6059_new	4	17	8	11	26	9	20	9	27	8
CCAATTTATTCTCTAT	alt_6059_new	19	23	19	11	22	11	22	23	22	16
ACACCAGTGATGTATC	alt_6059_new	6	6	8	4	9	4	12	4	5	7
TTCAAGCTTGGTTATG	alt_6059_new	33	60	34	26	35	19	54	31	61	20
AGGGGTTGGTCCGCCC	alt_6059_new	12	17	19	13	30	18	22	6	26	12
TTGGGATGGTCGCCTG	alt_6059_new	12	26	13	14	18	16	15	11	26	11
TGCAGCAGGCTTCAAA	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CAATGCTCACGTAGGT	alt_6059_new	0	0	0	0	0	0	0	0	0	0
ACCGAATGCGTTTTTC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
GTTTACACTTTATTGC	alt_6059_new	20	27	16	20	35	21	32	15	21	10
AATTTTTAAGCGCTAT	alt_6059_new	10	9	7	9	11	13	11	4	10	4
TCGCATCGCAAATCGG	alt_6059_new	18	23	20	13	30	8	28	14	41	11
TCGGGGGTATGGCTGC	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CCTCTTCGTTGACTCT	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CCATTCTTTCCTCGTG	alt_6059_new	28	44	33	20	37	30	55	19	49	24
AGTGGTGCATTGTGTA	alt_6059_new	31	78	38	34	84	30	61	23	73	17
ACATGAAAAGAATTGT	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CCAAATTAGTCTCGTC	alt_6059_new	2	1	0	2	5	0	2	1	7	3
AGATGAGGGTCCTGCC	alt_6059_new	4	11	5	5	10	4	10	4	11	11
CCCCTTTGGACGGTTG	alt_6059_new	7	12	9	6	16	3	11	3	8	3
TCCCATCAGGTACAGT	alt_6059_new	107	190	123	99	205	120	196	97	227	83
TCGTTGTACTCGCCGG	alt_6059_new	0	0	0	0	0	0	0	0	0	0
CCAGCTTGTTATGTGA	alt_6059_new	8	26	13	9	20	9	26	10	20	8
CTATATAACCGTGTTC	ref_1643_RC	195	46	232	175	53	148	44	187	45	178
GACGGAGCAACGCAGT	ref_1643_RC	42	13	49	50	16	57	11	53	19	47
GCAATCATAAAATAAT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
CTGGATGCTCTTGGCT	ref_1643_RC	202	43	213	218	51	184	43	221	46	180
CTCATGCTGATTTTCT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GCCCACCAGCTAAACC	ref_1643_RC	24	9	64	67	1	41	8	38	8	44
AGTTCCATGGTTGTGG	ref_1643_RC	551	104	642	566	97	500	121	510	122	446
ATCATCCATAAATGCG	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
CTTTGCTTAAACGCGA	ref_1643_RC	96	17	150	124	28	96	33	115	21	73
CGCAGGTGATGGGGCG	ref_1643_RC	41	10	39	48	6	40	13	28	12	28
GGCCCTATGCGGTCCG	ref_1643_RC	95	16	142	111	15	98	24	84	24	58
GCTCGGTCTCGTTACT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GTATACATTATGAAAA	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
CTCGCACACAGATTTT	ref_1643_RC	5	2	26	12	2	16	4	11	6	14
CTTCATGAGCTTACTA	ref_1643_RC	64	13	78	63	11	47	15	49	12	51
TATTTATGCGAGCTAG	ref_1643_RC	214	39	247	235	62	201	43	246	49	207
GGTGAGAGACTTTTGG	ref_1643_RC	146	26	173	164	31	145	36	138	34	109
ATGATTCCCTCGTGGG	ref_1643_RC	57	22	63	109	13	73	22	76	17	55
TCTGTTCTATAAATTT	ref_1643_RC	212	45	280	233	40	193	51	217	58	189
GATAGCTTTTGTTGGG	ref_1643_RC	81	17	65	82	10	87	19	75	11	61
GCATGTCCGGGTCCGT	ref_1643_RC	58	14	78	69	8	68	11	70	16	59
AATCTCAGAAAAGGTG	ref_1643_RC	95	26	136	126	17	99	21	126	29	89
CTCTTATTCTATCGCG	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GCAGTCCCGGCGGGAT	ref_1643_RC	94	27	137	123	14	99	27	106	18	90
CTCGGTAACGCGAGGA	ref_1643_RC	457	93	539	466	104	429	101	400	124	353
CATTATCTCCTAGGAG	ref_1643_RC	94	15	122	114	9	78	21	124	14	78
AGCATGCGGTCCAAAG	ref_1643_RC	15	3	13	26	5	22	4	13	8	13
TTGCTGTCTTATCCCG	ref_1643_RC	59	13	72	75	18	58	16	48	16	54
AGCTTTTACAATGCGG	ref_1643_RC	363	83	419	404	73	326	83	331	84	270
GCTATCCGCCGCTCGT	ref_1643_RC	20	4	43	19	7	26	4	24	11	28
TAGAGACCGGGCTTGC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TTTGAATCCAGGCCAT	ref_1643_RC	91	13	118	109	14	73	15	97	23	69
GCAAAGGACCACCAAC	ref_1643_RC	989	222	1254	1149	225	962	247	1070	223	890
TATTATGTTTCACTTA	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
AGTCTAAATAGTTAGG	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GATGGAGCCGGCCGCG	ref_1643_RC	55	16	52	53	9	40	6	43	11	35
GAATTCCGTAGTCCTT	ref_1643_RC	101	14	114	103	20	99	15	89	23	83
GCAGACTGTTCTAATG	ref_1643_RC	424	111	540	432	93	353	131	401	98	362
TGTATTGCTCTGTCGC	ref_1643_RC	60	23	80	59	12	71	22	71	9	41
CAGCACCTGGTATACT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
CGCACGCACCCTCGAC	ref_1643_RC	205	69	307	264	87	204	74	243	93	188
TCGGTTTTGAATATGC	ref_1643_RC	1017	225	1116	966	224	918	254	720	269	832
TAATTATCTCATCATT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GTCAGGATGACTGATA	ref_1643_RC	7	2	4	5	0	4	1	8	4	2
TAGTGAAAGTTGGTGA	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
AACTTTCATACCGTAT	ref_1643_RC	180	26	224	191	35	173	23	155	30	149
GCTGACCGCGATATCT	ref_1643_RC	84	33	144	110	50	93	49	89	48	76
TTTCATACGTTCATCC	ref_1643_RC	301	66	388	339	74	333	71	296	69	282
ATGCATCCAGTACGTT	ref_1643_RC	58	15	58	71	13	49	14	52	12	48
CGCACCTCCGTGAGGC	ref_1643_RC	58	14	63	59	16	48	17	41	7	45
TTGCTTGCGGTAGGAT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GCCCTTCTGCGTACAT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TTGGAGAATACGAGAC	ref_1643_RC	277	63	392	310	77	297	72	261	56	264
CAGTGTGAGGTACGTT	ref_1643_RC	198	33	250	211	41	177	33	158	54	166
GAGTCGGACTTGTTCA	ref_1643_RC	35	8	47	46	6	48	4	34	9	25
TGGTGTTCGCCGTGTG	ref_1643_RC	180	39	200	173	48	174	33	137	33	131
AGACAGTCCAGATAAA	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TTATATACTGTGATAG	ref_1643_RC	173	47	265	232	42	179	56	204	58	186
GCGATCTTGCATATTA	ref_1643_RC	57	8	49	57	8	36	5	48	9	44
TTTGGTAATTGGTGTT	ref_1643_RC	268	67	330	296	77	264	65	251	70	236
TTCAATGGTGCCTCAC	ref_1643_RC	185	50	248	210	38	180	44	195	37	188
TACCGGGTTTTTTCAT	ref_1643_RC	1923	339	2182	1954	374	1726	350	1833	426	1589
CTCTCGCCGCGGGTGA	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GTATACAGATAGCTCC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TGATGTCCCATGCTCC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TCTACCTGTGAATCGT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TCCGTAATGACAAAAT	ref_1643_RC	248	57	245	241	34	185	47	195	47	170
GTCTTCAGGTTCTTAT	ref_1643_RC	248	68	324	282	53	240	45	228	63	227
GGTTTTGGCAACGTCT	ref_1643_RC	117	22	151	127	24	115	23	115	27	127
CACATGTATATCTCTT	ref_1643_RC	1019	187	1296	922	206	1015	185	1075	210	833
GCAGGGTTCATTTTAA	ref_1643_RC	396	81	523	427	84	340	70	411	74	330
GTTAAGAGTGAAGGGT	ref_1643_RC	335	76	458	459	68	356	90	348	91	346
TGGGCGGGTTCCCCCG	ref_1643_RC	381	91	467	396	79	345	100	380	88	311
TTGCCGGGGGCTTGAC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TCTCAGGGCGTCCAAT	ref_1643_RC	109	17	147	121	25	87	13	108	22	111
TCATCATTTGGTTGCG	ref_1643_RC	43	11	56	49	17	31	10	44	15	44
ACGGATATATAGGAGG	ref_1643_RC	46	13	77	57	8	42	10	51	9	36
TTGGCACTCACGTCTT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GCTACGCTTTTTTTTC	ref_1643_RC	172	41	183	197	42	180	47	158	25	153
TTGCTAGACTGTGTTC	ref_1643_RC	23	11	44	29	10	17	11	34	7	17
ACGTGTAATCATGCTT	ref_1643_RC	34	15	43	34	11	37	11	35	9	38
TTAATCAAATATATGT	ref_1643_RC	55	9	64	58	6	44	11	48	8	50
TTCTAGTATGCAGCGA	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GATCCGTTTCAGACGG	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TGTTTACAATAGCGGG	ref_1643_RC	87	15	108	84	22	80	17	92	18	83
GAAGGTATTGAGAACA	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TGAACTGTTCTCGACT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TTCGACACAGCGTTGC	ref_1643_RC	54	10	64	64	18	48	8	46	13	39
GCGGTTCAACCTCAAG	ref_1643_RC	54	18	76	75	20	62	13	64	21	50
GGTCGGGGGCCTACGT	ref_1643_RC	272	54	341	303	53	249	65	274	54	244
AAAGCAACTCGTGGAT	ref_1643_RC	98	21	111	99	9	85	22	80	20	65
AAAATTGGATGTTATC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TGTGCATGATTCACTA	ref_1643_RC	23	3	13	24	9	18	4	13	7	10
AGTTTTTACTCCATCT	ref_1643_RC	102	25	117	93	27	84	16	87	21	92
CGGCAGCTGTTATGCT	ref_1643_RC	53	20	89	75	20	50	17	72	9	44
ACTCGCCACCCAGCCT	ref_1643_RC	28	23	27	22	10	14	15	16	21	15
CCGTCCATGCTCAATG	ref_1643_RC	189	33	219	205	34	182	39	173	31	162
GGACGGAAGTCTACCG	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GCATCCGGTGTAGACC	ref_1643_RC	894	173	1174	1006	203	867	201	894	180	829
CGGGGTATACTCCTTG	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TGGGTATTGAGTTCAG	ref_1643_RC	92	27	138	139	20	102	44	105	41	86
ATTGGGCAACCTCGTA	ref_1643_RC	2379	461	3050	2670	471	2242	469	2364	550	2120
GAGAGCAAAATAGTTT	ref_1643_RC	8	2	14	10	2	10	5	10	4	11
CAAGGTTGCAGAAATC	ref_1643_RC	14	4	32	24	6	11	5	13	4	16
AGCTCCTTGCACACGC	ref_1643_RC	183	45	219	199	51	146	42	186	38	155
TTGGTTCCCATTGCCG	ref_1643_RC	380	81	454	397	109	330	121	357	85	376
GTTTGGGGGGGACGGC	ref_1643_RC	98	16	104	104	20	84	26	108	11	74
TACTCGAGCTTAAGCA	ref_1643_RC	166	33	196	168	42	125	38	161	42	145
TTCACCGTTTGTAGTC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TAATAGACAGTCCCAG	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TGCCACCTGATCTCCG	ref_1643_RC	1	1	4	4	2	3	2	4	0	2
TAGCTCGTGGCTTATA	ref_1643_RC	59	23	98	75	10	56	14	88	13	53
CCGCTTATTGCGCTGC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
CCTTTACTGCCCGACT	ref_1643_RC	130	34	185	150	39	136	53	147	57	115
TAGGTTTTAGGTCTGG	ref_1643_RC	382	87	451	392	79	366	97	362	81	366
CTGTGGTTAGTACTGT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TGATTTGCTTGCCCTG	ref_1643_RC	245	54	290	280	58	183	50	222	50	184
AAATCCCGCGGCACGA	ref_1643_RC	45	19	59	54	7	59	8	37	12	39
TTTACGGGTTACATTA	ref_1643_RC	53	12	53	40	8	31	6	35	10	27
GCGGTTTGTAAAGTTG	ref_1643_RC	96	12	110	92	14	84	20	100	21	72
CCAGCGATCGGCCGGG	ref_1643_RC	54	9	46	54	7	53	12	42	16	40
ACACGCCACCCAGCCT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
CCATTAGTTGCCCCAT	ref_1643_RC	27	36	60	50	44	44	28	47	44	36
TAGTCGCGGCTCTGTC	ref_1643_RC	23	4	24	23	11	16	9	27	3	16
CTGATGGCCTCAACGT	ref_1643_RC	60	17	60	63	9	63	19	45	13	49
TTTATGTATGGAGCCT	ref_1643_RC	8	3	11	16	4	13	4	17	7	7
CTCTAACTCTAGCCAC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
GCAGGTTTGTAATCTC	ref_1643_RC	71	13	92	92	16	79	15	65	18	68
TAATTGGCGCCTCTTT	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
CTTCTTAGCCGGAAGG	ref_1643_RC	49	5	54	35	10	38	10	30	9	28
ATTCGTTTAATGGGAC	ref_1643_RC	106	37	163	122	36	121	25	142	43	131
ATGCGGGTCATAAACC	ref_1643_RC	168	38	262	203	28	189	48	211	45	204
CGACCCGACTACTTAC	ref_1643_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGTGTTCGTTTC	ref_6030_new	16	28	13	9	26	3	25	14	18	23
ATTTTCGTATCTGACC	ref_6030_new	9	18	20	17	28	12	27	11	29	13
CCGGACTCTCGTGTCA	ref_6030_new	0	0	0	0	0	0	0	0	0	0
ATCCCCTAGCGTGTTT	ref_6030_new	13	15	11	8	26	7	19	11	17	7
TACAGTTCAATCTGTT	ref_6030_new	1	0	0	0	1	0	2	1	0	1
ATACGCACATCTAGAT	ref_6030_new	0	0	0	0	0	0	0	0	0	0
TTCCACCTAGTGCTGC	ref_6030_new	0	0	0	0	0	0	0	0	0	0
CATGTTAAATGCTCGG	ref_6030_new	27	41	25	25	37	20	44	12	39	18
TTGTACGTTTAGTAAA	ref_6030_new	14	30	15	13	20	10	31	9	29	10
ACACAAAATCGTCTCA	ref_6030_new	9	18	9	4	11	10	7	6	12	1
CATCTGCTTTCGCAGT	ref_6030_new	27	40	16	31	45	22	41	18	52	23
TGTATTGCGTTGGCCC	ref_6030_new	16	35	30	21	35	19	25	19	26	20
GGGTCCAGGTCATGGA	ref_6030_new	26	26	20	10	23	11	24	8	35	8
ATTTTTTCGGTCAATA	ref_6030_new	8	15	10	10	21	6	18	8	12	6
TGGCGGCGGTTCTGGC	ref_6030_new	40	80	48	51	77	40	79	38	62	40
ATTTGTGGACTTTTTG	ref_6030_new	1	8	2	5	13	2	16	9	9	4
CTAGACCTCGGAAGCC	ref_6030_new	2	11	9	9	5	2	12	4	13	3
TATATAGCTACGCATT	ref_6030_new	16	15	12	13	18	16	13	6	28	11
AACTGGTATAAGATTG	ref_6030_new	40	64	53	32	76	34	62	44	72	42
TTGTGGGGACTGCGCC	ref_6030_new	28	73	31	41	61	26	61	21	78	30
CGGTCTGCCCAAATCG	ref_6030_new	2	3	2	0	5	1	1	0	5	0
GTCATGTGGGTACCCT	ref_6030_new	0	0	0	0	0	0	0	0	0	0
TACGGAGGGACTGCGT	ref_6030_new	9	14	16	6	8	7	19	9	8	10
GGGATAGCAAAGAGCC	ref_6030_new	7	12	10	3	9	4	7	8	17	5
GTTGCCTGTGTACCGG	ref_6030_new	0	0	0	0	0	0	0	0	0	0
CCCCAGAGTCGCCGTT	ref_6030_new	4	8	3	1	6	11	9	8	9	8
CACCACTCTACTACCC	ref_6030_new	0	0	0	0	0	0	0	0	0	0
GGAACTCCTAGCTAGA	ref_6030_new	11	23	15	11	20	9	14	14	15	16
ATAGGGCCTATACCAT	ref_6030_new	12	28	11	12	23	5	18	13	15	6
TAATGTAATATCCGGC	ref_6030_new	3	1	2	3	3	3	0	0	0	2
CAGTACATATTACATC	ref_6030_new	0	0	0	0	0	0	0	0	0	0
CATTTTTTAATCTTGA	ref_6030_new	0	0	0	0	0	0	0	0	0	0
GGAGACTTCTTGTGGT	ref_6030_new	64	99	59	65	86	40	97	42	89	49
ATTAACACGCGCGATG	ref_6030_new	11	35	23	22	30	20	27	11	26	9
CGGCAGTGGCCCTTAG	ref_6030_new	94	150	115	81	162	93	166	74	172	69
ATTGCAGATTAAATGC	ref_6030_new	0	0	0	0	0	0	0	0	0	0
TGTGACTGAGGACTTC	ref_6030_new	0	0	0	0	0	0	0	0	0	0
CAAGGGCCGTACAGTG	ref_6030_new	4	7	6	3	4	4	8	2	9	2
AAATGGTGTCTGCGCT	ref_6030_new	0	0	0	0	0	0	0	0	0	0
AGCTGTTCAACATAGG	ref_6030_new	0	0	0	0	0	0	0	0	0	0
CCGGTATAGCTTAATA	ref_6030_new	0	0	0	0	0	0	0	0	0	0
TACCGCCATCACGTGA	ref_6030_new	0	0	0	0	0	0	0	0	0	0
TTGCTCCAGCCATTCA	ref_6030_new	3	12	9	4	10	6	10	8	6	4
GATATTAAAAGCTGCT	ref_6030_new	9	13	9	13	10	2	14	4	10	10
CTCATATTGTTGTGTC	ref_6030_new	24	55	30	25	56	16	51	28	50	17
GCCGATCCCGAATAGC	ref_6030_new	8	19	14	15	26	5	23	6	15	5
GGCCTGGGCGCGCCAC	ref_6030_new	25	48	31	23	39	14	33	20	25	29
ATGTGTCTTCAACGCG	ref_6030_new	12	19	24	11	21	19	22	11	28	12
TTTTACCTTCAAAATG	ref_6030_new	107	195	120	78	203	91	177	84	239	76
TACATATTTCTACTAG	ref_6030_new	12	23	15	13	19	13	31	10	28	5
AGTTTATTAGTATTTC	ref_6030_new	28	46	32	22	42	16	39	19	49	23
CACGTAACGTAGTCTT	ref_6030_new	5	11	4	2	9	8	2	3	14	2
GTTGTAGGGGACGCCG	ref_6030_new	2	0	2	1	0	0	0	1	3	0
TACCTTCGCCCACAAG	ref_6030_new	3	14	19	11	10	14	26	9	21	8
ACGCCTGTAATCACGA	ref_6030_new	3	3	5	2	7	5	8	1	3	4
TGCCAGCCATTGAGCT	ref_6030_new	2	8	2	4	6	3	9	0	12	4
AACCAAGCAACTTATA	ref_6030_new	33	108	74	63	120	52	92	56	124	46
GCGCTACGTGTTAGAC	ref_6030_new	16	15	14	13	26	18	30	4	26	12
GTATGAGCCCGATCTT	ref_6030_new	6	20	8	11	7	8	14	7	13	5
ACAAGTTGTCGAGCTC	ref_6030_new	41	54	47	22	56	34	68	29	70	35
CATCCATCCCCTGCTA	ref_6030_new	38	95	48	47	101	46	94	42	94	49
TGTCCTCTTTCGGAAT	ref_6030_new	21	36	26	27	47	24	41	28	46	21
TAAAACAAGCTACTGT	ref_6030_new	4	7	0	4	6	7	5	0	6	2
CTATGCCCTAGTATTG	ref_6030_new	6	8	2	6	11	2	6	4	6	9
GGCATTAGCCATCTCG	ref_6030_new	34	77	48	34	82	35	96	36	88	40
ATTCCCTCTCGTATAC	ref_6030_new	7	12	5	7	14	6	11	7	8	11
TCGGTATGTCTTTGTA	ref_6030_new	16	19	14	4	27	14	13	4	26	14
AGCACAGTTGCTATAA	ref_6030_new	2	8	7	8	4	3	10	2	10	5
TACGCGGCGGGCTGCT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GGTCGACTGTTGTCAG	alt_5930_new	0	0	0	0	0	0	0	0	0	0
ACTATCGATATGGTGG	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GTATGACCTGTTTCAT	ref_5930_new	70	57	65	53	47	59	48	48	57	60
AGATTCTATAGCCTTT	alt_5930_new	109	137	110	108	106	85	111	88	106	77
TTACGCGCCCCAGGGT	alt_5930_new	73	92	60	48	59	54	73	44	79	60
CACTCGTCGGGGTATT	alt_5930_new	23	20	30	20	24	19	18	17	29	13
GTCAGCTCAGTCGTAC	alt_5930_new	9	15	16	13	21	9	13	17	13	15
CCCGCGTGTTATCGAC	alt_5930_new	45	46	66	57	61	46	65	43	56	36
TCCTAACCGTTGTGGG	alt_5930_new	45	83	74	61	97	43	81	62	93	40
TGTAGTATGACGGAGA	alt_5930_new	21	19	23	8	13	34	22	13	10	14
TCTCTCCAATTCGTTA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GCGGTGGACCGTCAGT	alt_5930_new	17	32	40	34	23	33	33	29	26	29
ATTACAAGACATTGCT	alt_5930_new	16	15	25	9	16	19	13	8	12	6
GTGTTGTCCTTTGATC	alt_5930_new	21	27	23	19	27	21	21	18	21	25
TTCGTGGGCCGCGCTC	alt_5930_new	2	0	5	2	1	1	4	3	2	4
GTTCCCGAGTTTACTA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TTCCCACTCGTCTTAC	alt_5930_new	14	10	18	8	16	10	13	10	16	8
ACATTTGATTAACTGA	alt_5930_new	11	13	20	14	14	12	21	15	11	9
CAGTTTTCTTAATTCG	alt_5930_new	47	47	46	41	52	41	48	38	44	50
GGCACGTACCGTGTAA	alt_5930_new	32	57	56	41	57	41	55	34	54	38
TGCTAAATTTCGTAGA	alt_5930_new	51	74	63	59	50	60	54	45	90	41
ACTTGTGAGCGATTCC	ref_5930_new	76	53	63	86	76	67	63	55	76	43
ATATTGTGATGTTCTG	alt_5930_new	1	3	1	0	1	2	2	1	4	1
AGTTACATAACAGACT	alt_5930_new	85	78	105	97	81	78	72	74	101	63
CCACCCTTGGCGACGG	alt_5930_new	11	11	8	2	4	7	7	8	5	2
TGTAAGCTTTTATCCA	alt_5930_new	6	6	11	5	9	5	14	5	7	6
TAAGATTTGCTGTAGC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GAAGAAAGGCGAATTG	alt_5930_new	14	7	10	15	9	16	13	18	26	15
ATTCTGCAGAGCTAAC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GGAAACTCGTGGAAAA	alt_5930_new	13	9	16	14	12	11	10	8	23	8
TTTGGCTTGGATTCAT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
CAGCTCAAATTAAATT	alt_5930_new	29	21	18	30	19	28	19	12	12	16
TGGGCTTACTAACCGA	alt_5930_new	44	55	55	60	58	43	63	58	55	51
TAGGTCGACGTCAGTT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
CGGCAATAAGAATTAC	alt_5930_new	13	21	27	24	23	25	20	21	18	21
GCTTATGCCGGTACCC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TCTTCGATTGAATGTT	alt_5930_new	57	53	46	56	49	40	51	38	40	34
TAAATGCTTTAAGGTT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
ATCCGATGACGATCCT	alt_5930_new	23	36	32	29	22	27	32	30	42	20
CATCTGAAATACTGCA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GACAAGGATGCCCCAA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TAAAAGAGTATGCGAT	alt_5930_new	9	5	11	8	11	7	13	14	3	7
GGGACCTGTTGACAGG	alt_5930_new	56	60	49	46	60	38	66	40	47	36
TTTATACGGATTCCCG	alt_5930_new	15	15	16	22	14	11	13	10	19	16
TGGCCTTATAGTCATC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TGAGGCTTAATTGATT	alt_5930_new	55	42	42	38	44	36	27	38	45	44
TTGCCAGTGGCTGGGT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TAAGTTGTGTCGTTCT	alt_5930_new	79	92	87	94	103	76	81	98	97	94
CCCGAACTTGCTGTAC	alt_5930_new	2	6	6	2	5	2	8	4	11	0
TTGCTCGATCACGCAG	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TGAGGGCAGTCTAACA	alt_5930_new	38	36	36	29	49	25	48	38	46	22
GCCTAATTGGCCCAGT	alt_5930_new	32	44	34	30	41	22	38	22	32	20
CCCTACCGCCGAGTGT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TGCTGAACTGAGTGCA	alt_5930_new	38	55	68	44	65	45	63	38	74	52
TAAACTCAGTGGGAAT	alt_5930_new	18	22	33	21	29	24	18	18	26	25
ATGATCGAGACTGTGT	alt_5930_new	22	52	26	17	59	10	43	16	50	17
GTTTTTTCAATCTTCA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GCTCTGATTCAGATGC	alt_5930_new	8	11	16	16	17	9	9	6	8	10
CGTCGTACGATTACGG	alt_5930_new	19	31	34	17	16	30	25	22	25	17
CCCAGGCTGTAACTTG	alt_5930_new	47	76	49	62	67	45	67	54	66	29
GGTCAACTCCTAGATT	alt_5930_new	9	12	9	15	11	14	15	12	15	23
ATGTGGATGATTCGTT	alt_5930_new	27	23	42	27	29	29	35	32	34	25
TTGCTCAATTCCTAGG	alt_5930_new	11	15	13	17	10	15	9	14	23	15
CTGCGATCAAGGTTCA	alt_5930_new	26	35	42	44	26	24	45	30	34	28
CCTCGGCATGGCTACT	alt_5930_new	110	107	132	127	106	109	102	103	99	103
TATCATCTCACTGGGG	alt_5930_new	26	36	49	35	39	32	49	41	34	25
GCGACACCGTTTGACC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GTGCTGTTTTATTCCA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
AAACGGGTAGGTCCTT	alt_5930_new	3	6	4	3	5	0	4	1	1	4
TAACAGTTTCGAATCA	alt_5930_new	8	7	9	5	6	10	4	9	12	11
GCATTCTATCGGCAAC	alt_5930_new	30	40	41	39	38	34	32	35	47	31
CTCAGGGCGATGCCTT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TGGATTTTCGGTAACC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TTGTTATTTGTCTGGT	alt_5930_new	15	22	14	17	19	17	21	21	17	7
GACTGCCCTCTGTACA	alt_5930_new	11	20	17	17	20	11	15	14	33	19
CGGGGGGCGGCTCCAG	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TTCAAATTAGGCGCAG	alt_5930_new	0	0	2	4	3	2	5	3	6	2
CCTATTTCTCCGATAC	ref_5930_new	17	21	10	14	30	12	24	14	29	10
TTTACTTTCTGAACCC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GCGAGGCTCTATTAAA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TGGACACAGCTTCAAC	alt_5930_new	57	63	70	62	54	49	57	40	58	54
GGTAGCATATTACCTT	alt_5930_new	16	17	17	9	16	15	21	9	19	12
AATTGTCGTTTGTCTT	alt_5930_new	12	16	19	8	17	15	13	9	12	12
CTAGCGGTCGTATTTC	alt_5930_new	1	13	5	4	5	0	2	0	6	1
TTTTTTTCGCCTGTTC	alt_5930_new	95	119	115	91	106	79	112	84	101	81
GCTTCATCGCAATGAG	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GCCCGGCATTGTTTAT	alt_5930_new	50	26	43	37	39	29	43	24	35	31
AATACTCGCTTGACGG	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GGCCTTTTGAACCCAA	alt_5930_new	1	1	2	1	0	0	2	0	2	1
CTGTGTCCCATTTGGG	alt_5930_new	11	11	4	10	13	8	11	2	6	7
CCCGCGTTTTGGATTT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TCCGGTATTTTCCGGT	alt_5930_new	45	57	34	33	50	39	36	41	50	29
TGTGGCTTCTATGACT	alt_5930_new	62	55	48	60	68	40	52	47	58	39
TTGCTAGCGTCCGTAG	alt_5930_new	7	17	7	13	20	7	19	13	24	12
TAGGTTCCTGTCACTA	alt_5930_new	39	36	45	43	46	29	42	24	51	27
GATCCTGGTAATAAAT	alt_5930_new	11	2	14	8	9	6	5	1	9	9
TTAGTATTCAAATCCC	alt_5930_new	74	75	85	60	64	70	67	66	69	55
TGAGGCATGCCATATC	alt_5930_new	9	11	9	7	9	14	14	7	9	11
CCTCTACTGGCATACT	alt_5930_new	14	28	31	28	31	13	28	16	26	20
CTCTTCTCCATTTTGC	alt_5930_new	215	168	244	222	190	185	213	177	228	191
GGTGTCTTTTTTCACC	alt_5930_new	22	24	19	21	24	11	18	18	38	19
GTACGAACCCATTGTA	alt_5930_new	7	11	11	12	13	11	14	6	10	10
AGGCTTCAAACTCCAA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
AGGCGTTCTTTTACGA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
ATTAGATAGGAATGCG	alt_5930_new	44	31	37	31	33	39	57	34	52	28
TTCGATACGCGCGACG	alt_5930_new	3	6	8	4	3	8	9	3	6	1
CTCTCTGGTCCTGCAG	alt_5930_new	5	2	3	2	3	2	5	5	6	4
CAGGGTTAACGAACGT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
GGCGTTGCGTCCCTGT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
CTACCGGCCGGTTCCG	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TACGGAGGATGACGGC	alt_5930_new	148	132	172	153	136	146	138	132	127	141
CCCACGTCTACTTCAG	alt_5930_new	19	29	21	23	37	29	44	17	38	26
CTTGCATTCCGTCCAG	alt_5930_new	18	10	15	15	14	14	13	13	11	11
CGACTATCGCCCTCCT	alt_5930_new	35	45	37	29	37	50	44	31	46	33
CTACCTAATCTACGTA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
ACGTGTCTTGGAGTTC	alt_5930_new	17	22	22	28	16	18	27	19	24	16
CTTCTCTCTGGGACCG	alt_5930_new	16	29	21	24	15	19	20	23	15	12
ATATGCCTTGTCTTAT	alt_5930_new	8	8	9	3	10	5	11	11	13	6
TCCTGCATATTTTAGT	alt_5930_new	9	19	11	13	17	11	11	10	10	4
TTCGCTCTCCCCGCTG	alt_5930_new	15	70	19	14	61	12	58	16	52	27
AGCTTTTACTATGGTA	alt_5930_new	9	13	13	14	9	4	21	13	10	10
CCGGTGGAGGGGTCTT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
AACGTTTAAGTGCAGG	alt_5930_new	0	1	1	3	3	4	3	1	4	2
AATTTTAGTCGATAAA	alt_5930_new	9	5	10	6	7	6	1	5	8	6
CCAATGTCTATGGCTG	alt_5930_new	15	30	16	20	29	16	28	18	37	25
GTGTTCTACCCGGCCT	alt_5930_new	3	3	7	6	6	5	7	2	4	4
ACATTACTCGATGTTT	alt_5930_new	16	17	20	18	16	12	10	10	14	12
CATTGATAAGCCCTGT	alt_5930_new	34	50	49	48	53	46	39	33	62	46
AGTTGAAGCACTTTTA	alt_5930_new	4	1	10	1	2	2	1	2	9	2
TGGCTCTGCTAGCTCT	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TTTCCTTCCGGTATTT	alt_5930_new	35	42	42	46	30	33	36	34	40	27
ACGTCATTTTTCTTTC	alt_5930_new	20	21	44	25	31	24	31	34	42	43
ATTATTGTCGTCACGG	alt_5930_new	108	114	140	113	118	107	107	116	110	117
CATGATGCTCTCCGAG	alt_5930_new	66	84	93	70	79	61	74	66	90	54
ACTCGTCGAGACTTGC	alt_5930_new	10	8	11	4	16	6	29	7	13	4
TCGTCACCGCTTTTAG	alt_5930_new	26	52	28	29	60	19	42	23	54	11
TGCGTGCTGATCACAA	alt_5930_new	23	23	37	29	31	14	38	17	31	21
CGTCGGCGTGGACGGA	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TTTGGTCATTGTTGAA	alt_5930_new	120	186	134	112	160	96	180	116	153	109
TCAGTACTACGACTAC	alt_5930_new	0	0	0	0	0	0	0	0	0	0
TGGTCTCAATCCAGGG	alt_5930_new	14	7	16	13	12	15	21	12	14	8
GGAAGTTGCGAGCATG	alt_5930_new	1	2	2	0	1	2	1	2	0	1
TTCGACCTGATTTTAC	alt_5930_new	38	38	44	48	44	29	34	39	46	42
CAAGCGTGTGTGTCAC	alt_5930_new	3	4	6	4	3	7	8	6	6	2
GTGGGGTGTTGAAGGA	alt_5930_new	36	34	50	33	48	25	41	37	41	21
GTTAGTTATATGCGGA	alt_5930_new	19	33	29	18	18	16	32	26	46	26
TCGTAAGACGTTTGTG	alt_5930_new	33	35	43	30	47	40	33	29	33	34
GAACTTAGCGTATATG	alt_5884_new	10	11	5	6	15	9	8	4	12	3
CCTCGTAGTATCGGGC	alt_5884_new	21	32	19	24	32	27	29	15	38	16
TGGTTTCGGGCCGCTA	alt_5884_new	17	24	15	20	24	18	36	11	32	15
AAGCTTTCTTGGATAT	alt_5884_new	24	35	22	19	44	14	38	27	49	10
ATCACTACAGGAGTCT	alt_5884_new	18	32	30	20	45	10	36	14	50	13
ACATGCCCTATTATAT	alt_5884_new	26	39	23	24	40	24	31	25	39	30
GTTCCATTTCTTCAAG	alt_5884_new	46	102	42	54	78	67	89	51	87	52
CATTAGCACACAGTTC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TTAGGGTCGTAGGATC	alt_5884_new	13	13	11	9	9	6	8	5	25	2
TCCACTTTTGGCTGGT	alt_5884_new	6	11	9	4	18	6	16	4	9	15
TGTCTTTTCGAACAAC	alt_5884_new	4	4	2	3	4	6	6	0	6	2
CGATCGACCCTCATTC	alt_5884_new	19	37	25	19	34	11	30	12	39	21
TAGGCCCCCCACTCTT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CTTTAACGAGTACTCC	alt_5884_new	46	76	35	32	74	34	65	30	76	29
ATTGGGTTTACGAGTA	alt_5884_new	11	22	20	8	26	12	20	10	19	11
CTGGGAGAGTCGCTAG	alt_5884_new	23	47	29	36	40	22	50	22	48	29
AAGGGTATGTTGAGAT	alt_5884_new	3	18	11	6	13	4	15	4	17	20
CGTTCCCGATGTATGA	alt_5884_new	9	15	14	14	17	11	18	15	18	9
TTTGATCAACATCGGA	alt_5884_new	40	56	50	39	58	32	71	38	53	36
GTATAGTATTGCCTAA	alt_5884_new	57	86	71	63	126	57	115	48	105	39
TCTCAGGGCGGCTTTA	alt_5884_new	14	13	17	20	18	17	39	13	31	15
GGAATCTTGGCGATCG	alt_5884_new	17	44	38	31	43	26	40	35	47	14
GAGGTTTGGCGTTATT	alt_5884_new	11	16	16	19	12	13	18	6	24	7
CCCAGAGCGAAGCCGC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CTTGTTCATTAGTGGC	alt_5884_new	3	4	11	5	10	9	9	10	8	4
TAAGGCTTGGTTTTGC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TGTCGGGTAATCCATT	alt_5884_new	129	208	177	133	237	145	249	141	234	130
AGCTAGTGTACGACTA	alt_5884_new	4	14	12	8	11	6	13	4	5	8
CTATCATTACGCTCGG	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CGGTCAATAGACTGTT	alt_5884_new	38	61	53	31	56	49	82	41	89	49
GACTCGCTCCGGTACA	alt_5884_new	19	39	30	28	42	27	58	35	29	25
CTAGATACTCTCGAAT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
ACTTGTGCTCTGGGGG	alt_5884_new	61	100	59	47	87	51	107	51	126	46
CATGGTGCCACAACCC	alt_5884_new	47	68	50	33	57	34	74	45	72	33
AGTTCGTTAGCACTGG	alt_5884_new	34	40	33	30	53	36	52	28	53	24
GGGAGCAGTTACTCCC	alt_5884_new	30	56	37	28	47	33	64	29	65	22
GCCCGTGTTCTACAGT	alt_5884_new	5	8	9	11	16	3	7	9	11	7
TTGGCGCATGTTCATT	alt_5884_new	42	77	47	48	72	37	84	43	94	45
CTTTCTATCCCGCCCG	alt_5884_new	9	22	15	11	10	13	24	20	33	17
CTGTAGACCAGGTTAA	alt_5884_new	103	178	116	132	184	81	212	99	224	97
TATAGGTATGCTCTGC	alt_5884_new	15	33	22	13	37	14	28	10	24	22
CAGGACGTAGGTGCGG	alt_5884_new	11	18	16	14	31	12	29	19	29	10
AGGCGTAGTTCATCTT	alt_5884_new	37	61	34	35	63	41	56	32	69	25
GCTCCTTGCTCGTTGT	alt_5884_new	4	21	11	12	21	8	26	7	23	6
TGCCACTGGGTACACC	alt_5884_new	10	18	14	13	14	8	25	2	24	5
AGTATCACAGTCGTGC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TGTTGATGTGGGATGT	alt_5884_new	6	8	7	5	5	4	6	5	10	2
CCGCTTCATATCCGAG	alt_5884_new	17	60	36	30	57	28	66	26	67	22
GGGAGCCATCGCGTTT	alt_5884_new	18	25	22	13	25	20	23	14	21	13
CCTCTTCTATTGTCTA	alt_5884_new	27	48	31	28	57	26	56	27	45	33
TGGGCCTTAGCTGATG	alt_5884_new	80	113	100	83	141	84	119	78	135	96
CGCAGCATCCTTGTCA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CGGCAATTTATTAGGC	alt_5884_new	8	13	15	14	15	8	21	16	17	7
TCCCATGATCGGAATC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GACGTTCAATCGAAAC	alt_5884_new	25	31	23	22	21	19	35	11	35	15
GTTTCTCTTGTGACAT	alt_5884_new	3	6	0	9	4	1	3	3	4	2
TTTACTTAAAAGCTTT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TATCTGATTCCGCTTC	alt_5884_new	33	53	46	34	54	34	54	25	56	35
TCTCGGGTCTTAGCAA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GTTTATCAACCTACTA	alt_5884_new	19	37	27	14	29	22	49	14	41	23
GGTCGTGTACTCCTGA	alt_5884_new	22	33	38	28	54	23	45	14	33	22
GATAATTTGTAAATGC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GACGATTGATAGGTAC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GCATGAGGAAAGGCGG	alt_5884_new	26	37	33	34	31	22	25	22	31	20
CTTACTCGGCATGGTA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
ATTACTTTCGTCAATA	alt_5884_new	26	45	32	23	50	31	46	28	57	21
ATCCTTTCATATGTTC	alt_5884_new	4	9	6	6	9	6	19	7	9	8
TAATTACGGCATGTAA	alt_5884_new	15	21	19	17	24	14	26	11	25	17
ACTCTACGCCCCCGCT	alt_5884_new	5	22	5	3	16	8	14	5	13	9
ACAGAATCCGCTCACT	alt_5884_new	12	29	30	11	29	24	32	21	39	9
GTTTTCAGAAGTTTTA	alt_5884_new	10	20	13	12	25	12	21	11	24	4
CTTTTTGGCTTCTGTT	alt_5884_new	25	30	17	17	39	18	25	22	25	20
GTCAACTACCTGTCAC	alt_5884_new	15	29	7	13	29	8	17	6	29	8
ATGCGATAATAGTATA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TTTCGCTAGATATAAT	alt_5884_new	7	11	8	7	7	4	8	2	8	5
GGTGGCGACTGGCAGA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GCGTTTCTTCTTCTAG	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CTGGTGTTTGGTTTGG	alt_5884_new	9	21	11	11	19	10	24	10	33	8
TGCCCCTCACACCAAG	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GCAGTGTTTACTGATG	alt_5884_new	36	60	46	36	57	49	89	36	69	22
TCCCATTGAGTTACTT	alt_5884_new	10	14	7	2	15	4	19	5	17	3
TATGCATATGGGGGCT	alt_5884_new	1	7	3	6	11	2	4	4	9	2
TGTCGCTGACCACATA	alt_5884_new	19	27	15	24	36	16	34	15	38	25
CATAGCCCGGTCTGCT	alt_5884_new	7	18	15	7	23	17	27	5	33	6
TGTACTTTCCAACGCA	alt_5884_new	6	8	8	2	4	6	4	3	13	1
TTCACGTGTTGTACTA	alt_5884_new	81	155	123	78	157	90	138	65	165	63
CCATTCATTGCGCTAT	alt_5884_new	15	27	20	9	27	14	13	9	18	10
CGCTTGAACGCTCTTC	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TACAGCAAAGCCCTTA	alt_5884_new	0	2	0	1	0	0	4	0	0	0
ATAAATTTTATTAGCC	alt_5884_new	4	14	11	6	7	4	12	5	13	3
AGAATAGGTAGAATCA	alt_5884_new	16	17	19	16	21	9	27	12	27	15
CAAATGATTAGGGAAG	alt_5884_new	0	0	0	0	0	0	0	0	0	0
AGCCCCCTTCTCTAGC	alt_5884_new	20	36	22	17	34	20	37	14	34	15
GGCAAAGACCGGGGGG	alt_5884_new	15	24	19	21	40	18	33	17	30	15
TATGGAATCAATTAGA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TAGCGGAGGCTCGCCT	alt_5884_new	3	2	0	1	3	2	3	1	2	4
GGTCTCAGTACAGGTA	alt_5884_new	21	42	27	18	25	19	39	17	31	18
TGCTCTGTTTTCTATT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TCGCGCCCTCAGCCGA	alt_5884_new	10	20	14	16	20	13	21	18	15	12
TCCCAGGTCCTACTAG	alt_5884_new	37	87	50	47	80	50	83	48	77	41
TCTTACCGAGTCTAAA	alt_5884_new	5	5	4	1	5	2	4	4	8	0
AGGGTTTGATCCCGAC	alt_5884_new	45	64	41	38	49	49	57	61	59	31
TTTCGCTATTTTAGGA	alt_5884_new	13	20	26	18	35	14	32	13	35	10
TAACCCTACGCGGGCT	alt_5884_new	55	82	65	71	106	57	108	47	133	40
TCCTGTGAATAGAGTG	alt_5884_new	15	47	19	19	49	20	39	20	45	30
CTGTTGCATCGTTTAC	alt_5884_new	106	164	105	86	181	82	159	72	173	88
GTTTCTGTGACGTAAC	alt_5884_new	9	14	19	14	22	8	27	8	23	8
CCGGATTGTTACACCC	alt_5884_new	10	47	9	15	42	17	37	7	49	5
TATCGGTGCATCCCTT	alt_5884_new	12	22	12	15	23	9	23	16	25	15
TGATTCGAGACGCGCT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CTGGTCCTGTTTGGAT	alt_5884_new	17	31	15	9	24	16	14	15	30	14
CTGGTATGCTCTGATA	alt_5884_new	40	68	40	53	89	45	87	41	106	27
GCTCACGCTAACGGAT	alt_5884_new	5	13	12	8	16	5	16	4	13	8
CTAGCTTTAAGTACCA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CGAGGCTGAATGGCTA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GTACCTTACTATTCGG	alt_5884_new	15	28	16	12	27	11	24	9	21	14
TAAAGCCCCATACGTT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
GCAACTCCGTCCAAAG	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CATCCATGACAGAGAT	alt_5884_new	5	19	8	5	10	9	17	7	16	6
TCACGTCAGCTCTAGA	alt_5884_new	0	0	0	0	0	0	0	0	0	0
TACCCGGTAGCCAGCT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CTCGACATATTATCTG	alt_5884_new	42	50	42	57	107	45	64	46	62	30
AGGCTTCACTCACACA	alt_5884_new	5	9	4	7	10	11	6	5	8	6
GTTTTTGACAAAGGCA	alt_5884_new	47	95	71	51	86	35	73	38	99	47
TTCGGATTTACTGCGG	alt_5884_new	28	41	18	24	32	24	27	19	41	19
GCTGTAGCTCATCGTG	alt_5884_new	0	0	0	0	0	0	0	0	0	0
ATGGGGTTAGCACGAT	alt_5884_new	0	0	0	0	0	0	0	0	0	0
CATGCCATTCGCGCGG	alt_5884_new	0	0	0	0	0	0	0	0	0	0
ATCGTCCCTCACATTT	alt_5884_new	36	74	65	34	78	28	81	42	72	32
TCTTGTTTCAGGCAAG	alt_5884_new	45	59	44	34	54	29	61	27	58	27
TCATCTGCGAGTGACA	alt_5884_new	4	12	9	4	12	7	13	7	7	7
TAGCGTTCGTACTGTG	alt_5884_new	17	89	25	19	62	18	90	26	87	15
CGGACCCGAGGCTTCG	ref_5548_missing	55	26	53	54	33	40	30	48	26	34
GCCCCTTAGGGCATTG	ref_5548_missing	7	2	5	9	8	10	5	11	8	6
AGTCTAATAGCCCTGT	ref_5548_missing	367	182	432	433	221	294	193	334	227	337
GAATTACATGTCGAAA	ref_5548_missing	24	20	32	33	13	34	18	31	20	15
TAGTTAACGTTCTGGT	ref_5548_missing	244	162	284	264	172	237	165	244	185	223
AAGCCAGCCATCGATC	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
TAGGTGTGTGATTATC	ref_5548_missing	87	55	143	111	44	75	59	70	57	95
AGGTAAGAGCGTTTTG	ref_5548_missing	11	3	14	19	1	6	1	8	9	7
GGAATGTATCAACGTC	ref_5548_missing	24	13	40	21	17	28	25	26	19	42
CATCTAAAGTTGCAGC	ref_5548_missing	141	83	159	139	77	145	80	120	58	97
ATACTCCCTGTACTTA	ref_5548_missing	14	19	12	14	37	14	40	7	30	11
TGCGTGCTTGCATTTG	ref_5548_missing	87	60	82	92	55	69	57	88	62	87
CCATGTCTCATAGGCC	ref_5548_missing	16	16	17	15	5	12	5	14	13	14
CTATATTGCTACCCAA	ref_5548_missing	10	3	8	5	3	10	4	6	6	3
ATGATTAATGTTGTCC	ref_5548_missing	84	60	89	87	41	78	30	80	36	59
GTAGCGGGGTACATTC	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GCCCTGTTTACTTCCG	ref_5548_missing	56	44	70	56	31	50	37	48	26	56
CCTTCTTCACTGTGGG	ref_5548_missing	119	84	138	104	87	112	80	140	86	96
TACGATGCTTATCATC	ref_5548_missing	85	52	118	81	41	86	58	80	57	101
ATACAAGGGTTTTAAA	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
TGCCTCGTATATCTTA	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
AGACTCAGGGTGTTGT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
TGGAAAACTAAAAGTC	ref_5548_missing	54	34	58	74	27	57	45	42	26	36
GGATCTCCTCCCATGC	ref_5548_missing	7	5	10	8	8	5	7	7	9	10
GGCGGGCTAGTTGTGG	ref_5548_missing	220	152	258	258	178	202	150	232	158	210
GCTTTGTTACTGAGTA	ref_5548_missing	38	23	62	30	27	35	24	40	28	39
CGGTTCCTAACTTTGT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GATTTGGTGTTTCGGT	ref_5548_missing	39	28	58	52	29	44	35	43	39	26
TCTTGCGGTGATGTTG	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
CTGGCCCGAGTCGTCA	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
CTGGTTTAAAGTTCAG	ref_5548_missing	4	5	17	13	4	6	2	3	5	8
AGTTGGAACTCGAAGA	ref_5548_missing	15	6	7	15	12	15	12	15	13	12
TAGAGATTGGCGTTTA	ref_5548_missing	48	33	79	54	30	58	59	40	44	33
CGTAACCCTCTAATCT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
TTAGATCAACTTCACT	ref_5548_missing	51	34	81	67	37	59	35	66	37	39
AGAGGGAGTAGGTACT	ref_5548_missing	12	10	19	13	10	6	6	22	12	10
ATTGACTCCAGTAGAC	ref_5548_missing	17	17	25	19	20	21	14	24	13	20
GTTGTTATTCTGGTTA	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GCTGGAATTCCCTGAC	ref_5548_missing	110	45	136	97	70	102	52	102	58	73
ACCCCGTCCTTCAACT	ref_5548_missing	22	20	20	20	33	9	29	15	20	18
CCAAAATGAGGTCTTT	ref_5548_missing	31	12	29	43	22	46	23	23	18	22
TACAGTACATGCAGCA	ref_5548_missing	24	28	34	37	13	21	25	30	19	41
AGCGATTGTTGTAAAA	ref_5548_missing	96	79	109	109	95	93	90	103	84	87
CGTCTACATCATGGTT	ref_5548_missing	69	42	99	87	62	63	62	89	67	88
GGATTTTGCATGCGTT	ref_5548_missing	67	42	85	46	44	50	43	54	52	62
TTTTTTCTTTACAATA	ref_5548_missing	53	18	58	62	18	42	27	37	18	43
CCACGAGTTGAGTTTC	ref_5548_missing	71	41	86	74	57	66	39	61	51	56
TTCACTCCTCTACCAG	ref_5548_missing	44	66	75	50	78	59	84	43	97	56
AACAGCTTCAGGCAAT	ref_5548_missing	94	58	104	97	46	91	63	85	53	84
ACGTCATAGGCTGGCT	ref_5548_missing	55	30	70	51	38	58	28	58	39	39
TCGTAATTGATCTGGA	ref_5548_missing	50	42	80	67	37	50	36	58	40	42
TGAACTATATAGTAGC	ref_5548_missing	47	27	46	49	33	55	26	38	30	46
CTTTTATCTGCGTCCT	ref_5548_missing	34	122	47	32	135	35	135	29	116	26
TACATAATCGTGAATG	ref_5548_missing	87	47	93	84	53	81	62	84	51	83
CTTTGGACCTACCATG	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
TGGCTCCACTCAGGTG	ref_5548_missing	59	45	70	49	56	54	54	40	54	43
TGGGCCTTGTTGAGTC	ref_5548_missing	48	29	77	48	28	46	48	46	32	57
GATCTAAGTGGTGGCG	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
TCAATTAGGATCGAAT	ref_5548_missing	29	11	43	28	18	30	19	19	16	21
CTTTTCTAGTTGTGAC	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GCTGTACGCGGCCCTT	ref_5548_missing	26	18	25	29	18	16	17	30	17	31
TCGCGCCACCTCTTGT	ref_5548_missing	4	1	5	6	4	3	2	3	3	3
AGCCAGGAAGCCATGA	ref_5548_missing	39	33	43	42	18	25	24	39	30	27
ACAGACCTAGCTATCT	ref_5548_missing	37	24	47	31	16	40	17	34	17	40
CTTCCAACCTGAATTG	ref_5548_missing	254	229	342	248	288	224	277	204	274	201
ACAAAATACCTCGCTG	ref_5548_missing	41	28	43	43	22	42	21	38	17	24
ATGCTCGACAGGGACT	ref_5548_missing	1	0	3	3	2	7	4	1	1	0
TTTTATATAGCATCAG	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
ACCTCAACCGTCTACG	ref_5548_missing	44	48	54	43	52	43	39	57	37	41
GAGCGACAGGGCTGAT	ref_5548_missing	45	21	47	43	28	34	21	48	26	36
GGCCAATCACTGGGCC	ref_5548_missing	7	6	5	3	3	6	6	8	2	0
CGTAATGCCCACCCGC	ref_5548_missing	12	7	5	9	12	6	3	15	4	11
CGACGCACCGTTGAAT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
TCAGGATCCGCGGTAA	ref_5548_missing	132	72	160	133	84	104	86	131	81	116
ATGGCGCGTTTAATGA	ref_5548_missing	68	35	80	65	43	62	43	71	28	43
CCCTATACCTTTTACG	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GCAGATGCTCCATCTT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GTAGGCTTTGGACTGT	ref_5548_missing	128	79	150	120	75	114	91	105	76	102
AGGACGGGTAGCATTG	ref_5548_missing	16	14	23	18	5	20	8	19	9	9
AAGTAGATCTTAGAAC	ref_5548_missing	62	48	87	91	51	61	50	68	66	43
CACTTAAGAAATCTTG	ref_5548_missing	70	51	106	92	53	90	46	84	54	71
TACCCCATATATTGCG	ref_5548_missing	140	107	188	141	85	148	91	165	90	140
CATCTGTTCCGCGCAA	ref_5548_missing	40	34	59	48	34	49	26	34	42	41
CGGGTAACGAATTACT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GAGCGATTGCCCAGCC	ref_5548_missing	51	29	65	53	29	45	30	41	45	51
TTAGGGTTCTAATCTG	ref_5548_missing	245	145	325	273	148	257	166	230	152	228
CCACCTCGTTCGTAGT	ref_5548_missing	33	33	48	35	25	43	48	29	44	27
CTGTGACACTCATTCG	ref_5548_missing	142	89	179	140	85	157	80	134	122	112
GAGCCATAAATTGCCT	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
AGTATATACAGGGTTG	ref_5548_missing	19	16	39	25	26	28	14	28	22	20
CTCTTGGGTAAAGGTG	ref_5548_missing	16	10	17	7	13	9	9	14	11	15
ACTTACTACGCTTTCT	ref_5548_missing	114	51	127	124	49	82	52	91	52	103
CTGTCTATCCCCGTTC	ref_5548_missing	31	31	37	31	21	27	32	23	37	20
TGATCGCCAGTCATAT	ref_5548_missing	14	20	32	31	21	20	12	28	13	24
TTCTAGTTCACAGGAC	ref_5548_missing	32	26	38	43	27	30	28	44	29	31
AGTGATCTAGTTGGAC	ref_5548_missing	22	10	17	8	11	18	12	9	14	19
TTCATCAGATTGTCTC	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
CCGCTTGATTTTTACC	ref_5548_missing	6	26	8	4	16	9	11	15	13	9
CGGCATAGCGAGTACC	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
CTACGGCAATCCATAC	ref_5548_missing	51	39	90	67	46	61	48	57	30	62
TGATATCCGATCGATG	ref_5548_missing	44	41	37	40	44	30	25	38	39	34
ACTTCCGAAAAGCCCG	ref_5548_missing	39	29	39	29	28	40	17	31	28	27
CGAGCCGCATGGGGGT	ref_5548_missing	34	22	63	45	38	50	31	38	32	34
AACTGCCCGGCCACTT	ref_5548_missing	15	21	30	29	27	32	27	20	19	24
AGGAGGTACCATCGAG	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
GTGATATCGAAGGATC	ref_5548_missing	110	53	110	101	72	95	55	93	71	108
TAACCGGCGGACTTAC	ref_5548_missing	18	16	19	12	10	7	17	8	9	11
TTGCTCCAACATTTTG	ref_5548_missing	49	39	57	63	40	52	38	57	40	48
AGTGTACAACTTTTGT	ref_5548_missing	17	6	20	9	10	5	8	10	8	13
AATTCCGAACTCATTC	ref_5548_missing	0	0	0	0	0	0	0	0	0	0
CGCAAGGAGGAGACTT	ref_5548_missing	17	22	39	35	26	22	28	34	31	27
GACGATTCGACGTACT	ref_3187_RC	118	147	141	190	138	115	139	117	132	123
TTTCTGCTCTTCTACT	ref_3187_RC	10	14	20	11	10	16	4	15	13	9
CCTGTTATACCGGTCA	alt_3187_RC	174	153	167	175	184	134	185	152	177	144
TCCTTGTCTTAACTAC	ref_3187_RC	65	48	56	36	52	50	47	37	52	38
GACGCTAAGATGTTCT	alt_3187_RC	44	40	56	62	54	40	56	51	68	49
CCGTCGAGCAGTTTTT	ref_3187_RC	9	14	25	24	19	13	17	8	16	15
ATGGTTATTACGAGGT	ref_3187_RC	35	31	48	44	41	31	36	49	46	31
TGATCGTTATACCGTA	ref_3187_RC	38	41	51	41	50	47	35	39	53	38
CGTGGTAGTTGTCCAC	ref_3187_RC	20	25	32	48	30	26	35	29	37	34
TTCTAGATGGTCGGCC	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GATGCATCAGTTCTGG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
ATGGCTGTGTTTAAGA	ref_3187_RC	12	6	8	6	7	4	11	8	15	9
CGCCCCCATTTGTAAT	ref_3187_RC	27	31	46	23	30	28	21	24	26	26
CGCGCAGATTTAATTA	ref_3187_RC	69	66	99	71	74	57	74	60	80	62
AGCGGCACCTTGAAGC	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
AGACAAACGCTCCCGG	ref_3187_RC	6	10	15	8	9	9	12	12	6	13
CAGAGAGTGCGGTTTA	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TTGGTTGTCCACTATT	ref_3187_RC	90	73	97	97	89	80	71	80	104	78
TTTGTCCTTTACACAT	ref_3187_RC	29	24	27	21	20	39	21	23	26	29
GTCTGTTTTTTCGCTT	ref_3187_RC	68	62	87	85	59	66	67	62	74	62
GCTGATCTAGTAAACC	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GGATGGTACTACCCGG	ref_3187_RC	99	90	104	80	87	98	91	73	90	97
TCTTCAACACATCGGC	ref_3187_RC	0	1	0	0	0	0	0	1	0	0
GAGTTCGAGTGTTTTG	ref_3187_RC	7	15	20	9	16	7	15	10	14	12
TACTTCTTTGTCTATA	ref_3187_RC	175	198	212	220	169	177	171	217	190	158
CAGGTCCCCAATGTAG	ref_3187_RC	743	675	967	837	636	774	711	769	755	715
TATACTCACTGTGGTT	ref_3187_RC	9	9	7	1	15	5	3	5	3	2
CTTGGTTACATCGGCC	ref_3187_RC	28	27	37	45	40	23	39	42	33	34
GCCATCAATTAGGTCT	ref_3187_RC	58	56	56	62	37	67	50	61	49	54
TCCCATATTTAATGGT	ref_3187_RC	10	11	9	13	9	12	14	12	18	11
TTCGTCCTGTGTCAAT	ref_3187_RC	295	275	409	336	348	316	339	292	333	299
GCACCTAGCCATGCCT	ref_3187_RC	0	7	1	9	11	4	5	1	5	0
TTCGGGCATGCTGCAA	ref_3187_RC	5	6	4	3	5	2	2	5	4	5
GAATCATGGCGTTCTC	ref_3187_RC	64	59	79	66	75	66	54	83	79	89
CGTCACATCTACGCTT	ref_3187_RC	69	37	58	54	40	61	25	41	43	42
AAATCCCGATACGAAT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TCGCGTCCCTACATAT	ref_3187_RC	21	15	24	19	37	13	18	11	13	10
TCTAATCGATCTTCCG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GTCTTGATCATTTATC	ref_3187_RC	69	73	93	88	82	77	92	78	73	56
ACGTGCGTCATGAAGA	ref_3187_RC	23	17	32	26	18	13	30	29	17	31
CAATCGTCCATCCAAA	ref_3187_RC	32	25	40	32	34	27	30	28	42	28
GTTACTGTTTCTTCGT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TGTCTCGCAATAGTGG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TGCGTCTTAAGCTTCA	ref_3187_RC	13	25	25	22	15	26	18	22	24	20
AGTGCGATCAACTGCT	ref_3187_RC	4	12	6	8	10	2	11	2	10	4
CATTCCGACACGGATA	ref_3187_RC	28	36	40	25	31	23	33	27	35	26
TCGTAACGTATTTCTT	ref_3187_RC	6	4	4	5	4	4	8	1	9	6
TATGCATACGAGTTAG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TCTCTTGTTCTGCTCA	ref_3187_RC	7	8	8	15	3	8	9	11	9	8
CTTAAATAGCGTGTGA	ref_3187_RC	87	74	102	82	95	97	76	84	93	87
CAGCCGACGGCCCTAG	ref_3187_RC	70	80	90	72	75	43	84	67	76	70
CGTTTGGAGACTCTTG	ref_3187_RC	25	20	33	23	19	23	30	20	28	21
GCTTCAGATGATGATC	ref_3187_RC	18	10	15	10	13	10	7	13	10	7
AAAGTATTCATTCTAT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TTGACAGGGCCCCGCT	ref_3187_RC	115	86	139	133	91	121	107	103	85	107
GGGGTTTTTCATTGCT	ref_3187_RC	131	102	173	137	130	120	120	131	142	103
CAAGGGCGAGTAGGTT	ref_3187_RC	44	34	58	54	48	40	35	42	44	54
CACAGGAGTGATGGTG	ref_3187_RC	26	30	39	22	29	16	23	24	27	25
ATTAGTTTCTCTCTAA	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
ATAAGCTTTCTCGGAT	ref_3187_RC	10	6	7	11	4	4	6	2	9	3
ACCGATTCCTTGTGGG	ref_3187_RC	42	24	40	25	37	23	26	23	27	20
ATTCGGGGACTTCCTT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
AGAACTTTCACCGACG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TAAGATCCGCTGTCAC	ref_3187_RC	1	7	7	4	8	1	5	8	5	5
GTTTTGCAGTGTGGCT	ref_3187_RC	2	3	1	4	1	1	0	0	3	1
TGCCACTGGAAGGTAT	ref_3187_RC	19	16	27	27	32	12	27	16	30	20
GTCCTTTAATTCTATC	ref_3187_RC	94	113	136	114	83	82	113	127	120	90
GCAATTCGAGCAATTC	ref_3187_RC	15	8	15	13	9	9	7	19	11	20
CTGGCCATCTCCTGTC	ref_3187_RC	5	14	2	5	23	4	24	2	16	3
GAGGGGAGTTCTAATA	ref_3187_RC	37	31	55	47	25	47	47	30	43	51
ACTTCTTGTATTCTGG	ref_3187_RC	113	113	185	135	102	147	141	133	128	112
TGCCCGAGCCCGGAAA	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GAGCGTTCCAACTGTC	ref_3187_RC	14	13	17	20	19	23	24	24	29	14
GGTTTTCGCTCTGTAG	ref_3187_RC	11	4	2	12	8	9	8	4	10	12
AATTTTTGGCATAGGA	ref_3187_RC	39	28	52	37	33	34	30	35	34	36
AACTGGCGTGCCCGGT	ref_3187_RC	78	76	89	74	66	54	78	74	70	68
GCATGTATTGGTAAAC	ref_3187_RC	19	29	28	28	32	20	16	22	32	11
TTATAGTTAGCACCCT	ref_3187_RC	31	29	36	25	18	33	34	36	15	37
TAATTGCCAGCCTATC	ref_3187_RC	17	20	12	15	8	14	27	17	30	15
GCTGTCTTATTGTGCG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
ACCTGGTGGTTTGCAT	ref_3187_RC	15	17	21	22	24	11	10	11	9	9
TGGTGGACAGTTTATT	ref_3187_RC	313	307	420	340	287	318	275	287	294	292
AGATTCGAATTCGACG	ref_3187_RC	137	97	142	119	126	126	127	129	122	109
CCAAAATCTTCCAGTC	ref_3187_RC	49	51	67	48	58	49	48	45	68	65
ACATCTCTCCGCTATG	ref_3187_RC	5	20	5	1	11	6	17	4	16	12
GAGGGTTGTTTTCTTC	ref_3187_RC	105	60	116	86	62	96	63	90	71	58
TGCGAGTTAAGTCTTA	ref_3187_RC	61	68	84	84	75	56	68	76	71	63
TTCAGGCCGTCAGTTC	ref_3187_RC	1	5	3	9	3	4	6	1	1	2
AAACCCCCATGGTACT	ref_3187_RC	36	31	40	27	28	23	26	34	32	23
CAAGTCCAATATGGTT	ref_3187_RC	20	34	28	22	35	18	32	29	49	27
TACGGATTATCCACTT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GTTTCTCCGGGTCTGC	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
AACTTGAAATACAATT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
CGTCCCCATTTGAGCG	ref_3187_RC	88	57	87	87	71	100	49	79	83	71
GGTCCACGCTTCTTAA	ref_3187_RC	26	19	27	21	26	26	15	33	27	20
CCTTTCGGTCGTGCGA	ref_3187_RC	26	20	18	9	15	18	21	17	28	12
CCTTGGAATTGTAGTC	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TACCGGTTGTTCTGTT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
CTAGAGTGATTGGCTG	ref_3187_RC	23	24	25	22	23	17	27	22	31	14
CCGGAGCATGCGCGGT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GTCTGGGTCTTTTTTT	ref_3187_RC	155	123	173	129	128	139	130	134	128	126
ATGATTGTCATTTTCC	ref_3187_RC	40	33	40	45	24	33	39	27	36	33
GGCTGCTTGCACCCTT	ref_3187_RC	3	3	6	5	6	12	3	4	5	6
CTCGTTGTGCGGACAA	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GCCTCTACAGCTTAGA	ref_3187_RC	51	58	60	77	64	40	52	52	48	45
ATGCCGCCTACTACAC	ref_3187_RC	33	48	39	55	30	40	43	41	48	38
GCACTGGTTAAATTCG	ref_3187_RC	55	58	77	69	70	59	56	48	52	47
TCGTATGGTGTTCTCG	ref_3187_RC	4	6	4	2	6	3	3	4	7	6
GATAGAGTATCCAGTA	ref_3187_RC	76	83	98	126	80	69	87	80	101	88
ACAGGTGTTTTATTAC	ref_3187_RC	37	48	49	50	55	45	42	51	44	31
CTATCTACCTACCAGT	ref_3187_RC	21	28	38	30	28	32	33	21	47	27
TAGGCTCGTGGCGGTG	ref_3187_RC	42	48	62	48	42	34	29	41	41	45
GCAAGCATCATGTTGA	ref_3187_RC	2	14	8	6	7	8	11	9	7	10
CGTTTTGGAATAGCGA	ref_3187_RC	0	4	3	0	2	2	0	1	1	1
TTGGGTGGTTAGTCGG	ref_3187_RC	66	85	107	91	76	89	93	95	69	66
AGCCTGTAATCTCCTA	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
GGTTTAAAGGACATTT	ref_3187_RC	18	12	15	9	12	6	13	13	19	11
TATGAACTGCATAAAA	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
CAGGCAACTTAGCTCC	ref_3187_RC	90	98	103	91	92	70	94	68	97	76
TTTTATTTTCCGGTGT	ref_3187_RC	12	14	18	17	7	11	11	13	10	18
GCGTAGGGTTCGTCCA	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TTCTCGGGACAACCAG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
CGTCGTGAGATACGGT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
ACCGTATCGGGTGGGT	ref_3187_RC	23	17	21	20	20	20	17	14	11	16
CATTATCTGGGTGAAG	ref_3187_RC	36	20	24	35	29	27	31	31	30	15
CTAGCCCTGGCCTTAG	ref_3187_RC	43	56	57	40	45	40	69	38	50	45
TATAAACAAGATCGTT	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
AAACGTCTCATATGAC	ref_3187_RC	48	54	58	54	52	48	60	43	68	42
GCGTAAGAGCGAGTAG	ref_3187_RC	23	19	26	24	11	11	9	21	15	21
GCTTGGGTCGCGCTCT	ref_3187_RC	62	45	50	49	50	48	39	48	52	40
GGCTGCTTGCTCCTTG	ref_3187_RC	0	0	0	0	0	0	0	0	0	0
TTGCATAGAAACGCCG	ref_3187_RC	87	64	106	82	64	106	73	83	88	63
ACTATGCTTTTCTCGT	alt_2112_RC	3	6	7	5	5	3	9	4	10	3
CTTCGCCCTGCCGGTC	alt_2112_RC	1	0	4	2	6	7	8	1	5	7
TGCACCCCCCTGCCAA	alt_2112_RC	4	7	5	2	22	1	10	1	8	3
ACGCTTTTTGTATCCA	alt_2112_RC	64	47	68	47	65	44	56	43	81	48
GCTTCTGGTAGGAAAA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CTGTCTCCGAGCGTCT	alt_2112_RC	179	186	205	144	204	137	212	158	236	139
AGAGGTGACGGTTGTC	alt_2112_RC	11	27	22	9	18	18	26	12	25	24
GTAATGTGGAAAAATC	alt_2112_RC	40	37	36	37	49	39	43	43	50	46
AATCATTGTGGTAGCG	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GGTTGTCCTATTCTAT	alt_2112_RC	27	46	39	30	44	24	43	34	43	34
CGCGAGCTTTTTACTA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CCAGAAGTTGGCGGCC	alt_2112_RC	4	12	9	11	6	2	5	8	11	7
CTTTCCATATCTAGGG	alt_2112_RC	0	7	2	6	3	2	4	1	9	1
GTTGCTTCTGGTAGTT	alt_2112_RC	34	29	41	36	35	29	36	27	41	33
AGTACACAATCTAACC	alt_2112_RC	9	20	7	13	15	10	15	9	23	7
ATGAGGGTGCGTCTAT	alt_2112_RC	8	6	8	4	6	8	14	7	9	5
TCTCAGGAGATATTAA	alt_2112_RC	22	33	30	28	18	21	31	25	30	31
TGGTTCAGCTCGCTCT	alt_2112_RC	19	27	21	21	24	23	41	25	37	20
TCGCCTACGGCCTTTA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
ATATCTTCCATAGTTA	alt_2112_RC	28	29	29	30	34	30	48	22	53	30
ACGTATTGCGCAACCT	alt_2112_RC	10	5	9	7	12	8	5	8	14	9
ACCCTTTCTCTTCTGG	alt_2112_RC	10	20	12	17	19	6	16	7	17	6
GCCACAGTGTGTTCGG	alt_2112_RC	16	23	32	12	35	14	40	22	22	16
TAAAAGACTATCCGGT	alt_2112_RC	3	5	2	4	4	4	2	2	5	0
TGTCACAACAGCATTA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TGCGTACTCTATCTGA	alt_2112_RC	6	9	12	9	6	8	16	7	14	12
GTGGTGGGGACATGCT	alt_2112_RC	14	25	15	8	14	12	18	13	15	13
TTTGTTATGTCAGTAA	alt_2112_RC	16	24	28	13	24	15	36	24	27	17
GCGTGCCAGATGCGAC	alt_2112_RC	9	6	5	5	9	5	9	5	11	1
AGGTTCTCCGGACGAG	alt_2112_RC	1	11	11	6	9	8	8	8	8	5
TGAAGTAGCTAATTTC	alt_2112_RC	20	10	13	16	12	20	16	15	21	14
TACACGAAGAGCGATT	alt_2112_RC	111	142	129	113	131	102	158	87	157	97
CGTTGTACTAATTATC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CCGCTACGAGTAGGCC	alt_2112_RC	1	0	2	1	3	2	4	3	0	1
ATGTAGTAAGTTGCTT	alt_2112_RC	48	88	60	60	109	45	94	44	90	67
GCGTCTCCGCGATCCC	alt_2112_RC	24	17	32	18	47	24	39	21	26	23
AATCGTTCAGATTGCT	alt_2112_RC	26	27	29	25	27	29	37	27	24	21
TAACACACAGCTTGGC	alt_2112_RC	4	9	9	1	11	2	3	6	9	2
CTTTTAAACATCAAAA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
AGGACATCTTGTCAGT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TTTGCGCGGGTTTTGG	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GCACCCACAATCTCTC	alt_2112_RC	8	11	10	3	2	6	13	4	9	6
CTTTGAATCGCCGCCT	alt_2112_RC	10	17	15	12	12	14	20	13	23	11
GATTTCCGTCACATGG	alt_2112_RC	86	82	80	58	88	63	97	68	83	61
CTATGTGCTTAATTGT	alt_2112_RC	33	75	47	37	75	44	74	29	72	43
ATATGCGCCCTTATGA	alt_2112_RC	30	42	33	38	50	35	60	23	56	25
CAGGTTCGTCGACTGT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TAGGTCTCTCGGTGTA	alt_2112_RC	13	19	18	20	30	20	34	15	14	10
GCTACTATGACCTCAT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CCCTGCACGCACTTCA	alt_2112_RC	60	183	93	70	176	53	191	83	160	73
ATTAGCGTTGATTTCT	alt_2112_RC	4	4	2	2	7	4	5	2	7	3
CTCAGGTAGAGGTACT	alt_2112_RC	26	65	37	44	66	37	53	46	76	26
GCAATAGTTTCCATGG	alt_2112_RC	9	8	11	7	13	3	15	11	17	9
GCTGTTTATATTGCGC	alt_2112_RC	18	27	25	13	28	12	30	18	18	10
CTCCTACGTTAATATA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CGACAGTTTTGCATAA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CTTGATGGTCTGTTCG	alt_2112_RC	91	95	103	89	113	89	113	86	87	63
TTGGGGCAGCGACGTT	alt_2112_RC	15	28	21	18	16	23	21	17	21	16
TTCCGGACTATGGAAA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
ATTTTGCTAGTTTAGT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
ATCACATATGCACCAT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CAGTATAAGCAGCGCA	alt_2112_RC	25	24	19	31	23	21	36	19	27	17
CAGCCATGGCACGCCA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GTAATAAGACGCTCTG	alt_2112_RC	10	17	16	7	11	13	33	15	15	11
TGGCGCTGGCTTCGTT	alt_2112_RC	12	18	21	14	12	16	14	12	16	12
CACCGTGGATCTCCTC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TTGAACTTCACGTTAT	alt_2112_RC	5	3	9	5	8	2	7	6	12	3
TCCGTCATTGCTCTGT	alt_2112_RC	33	40	46	35	56	36	51	27	40	35
CGTCCAATAGGGATAT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GGGTTGTTCTGTCGCG	alt_2112_RC	4	6	0	2	5	1	4	2	8	2
CGGCTAGTTGACGGAG	alt_2112_RC	10	9	12	5	8	8	13	6	16	10
TAACTTCGCCGCACTT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CTCGTCCAATAGCTAT	alt_2112_RC	1	9	5	6	11	3	8	7	7	10
AATCGCACCGTCCTAG	alt_2112_RC	24	31	31	28	28	27	45	19	36	21
TAGTATTTTGATTCGT	alt_2112_RC	22	40	21	18	33	17	37	21	25	15
CTTTCGATTGTGTCCA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CATCGCCGGTGGCGTA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GCTTAGCTATTTTGGA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
ATGTTCCCGCTTCAGG	alt_2112_RC	16	14	20	11	14	16	10	11	10	13
GTGTTGATTTGTTCCG	alt_2112_RC	1	0	3	0	0	2	1	0	1	1
CCGAATTTCTAGCGAT	alt_2112_RC	94	169	141	114	142	96	161	99	128	95
AGGGGTTTACCTTCTT	alt_2112_RC	5	6	2	3	11	5	8	5	8	3
CTTGACCCATCTCAAA	alt_2112_RC	13	20	7	12	25	6	24	11	12	8
GGCAACTGACCTTATC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CTATTTTCCGTGCAGT	alt_2112_RC	16	24	18	18	26	16	20	15	21	15
CGCGGCTGACACAATA	alt_2112_RC	34	23	39	20	27	29	38	30	40	31
TGGTCTCGTTGCGGAA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GTGTTCGTTCAGCGTG	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TATGGAATGGTTTTTT	alt_2112_RC	19	19	26	29	18	15	22	12	18	16
TTCATCAAAAAGAGGT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TTTGCACCGGGCTTCA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CGATGGCAGGCTTCGG	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TCTCACGGTCTTATGC	alt_2112_RC	25	30	39	27	40	22	21	28	35	19
ACAAGCGGTGGGTGGA	alt_2112_RC	9	11	6	7	11	7	8	8	6	10
TCTTGTATACGATTAC	alt_2112_RC	17	20	19	13	12	10	18	10	36	13
ATCGGCTCATGATCTT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GATCTCGTTGTTTTGG	alt_2112_RC	1	1	0	1	1	2	1	0	2	0
CCCTTATTATCGGATA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TGCCTAAAGTTCCTAA	alt_2112_RC	1	3	1	2	3	2	5	1	7	4
TTGTAATCTCATTCAA	alt_2112_RC	30	64	33	31	57	36	33	24	48	19
TAAGGCTTTTGACCTT	alt_2112_RC	17	26	18	20	29	19	23	12	29	18
CGGCCCATTGTGGGGC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TTCATTTTTATCGTGG	alt_2112_RC	21	25	25	19	22	11	29	15	19	17
TTATTTCATATGTTGG	alt_2112_RC	13	22	15	9	13	13	20	6	23	11
AATCCTCGGCGTACAG	alt_2112_RC	18	19	22	13	20	12	20	13	18	13
GCTCCATCCTTACCTT	alt_2112_RC	2	23	7	3	28	4	24	3	20	7
GTGACCCACGCAATTG	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CGATTATACCCGTTTC	alt_2112_RC	18	21	17	16	29	19	20	24	28	14
TTGTTAGATTGTAGAT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TTGGCCTTTCTTTAGC	alt_2112_RC	17	34	38	21	28	31	43	34	40	33
GTGAGGCGATCCTACT	alt_2112_RC	38	41	36	31	22	28	31	29	52	34
CCATTCGTTTCGTGAA	alt_2112_RC	54	47	51	49	35	26	55	51	66	54
TACGAATACACGCAAA	alt_2112_RC	3	2	5	1	1	1	2	2	6	1
GTAATAAACCTATCAC	alt_2112_RC	12	17	18	6	19	20	22	11	27	14
CAAGATGCGCAGGACA	alt_2112_RC	4	6	16	10	6	5	10	6	11	6
TCAAGCTGCTACCAGC	alt_2112_RC	7	6	14	5	8	4	10	3	10	6
AGATGCAAAGTAGCTA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TTACAATTGTCTTTGG	alt_2112_RC	16	17	16	16	17	12	23	12	21	13
TTTTCTTTTGCAATCT	alt_2112_RC	12	11	9	5	19	4	10	6	11	6
TCGTTAAGTTAGTTGG	alt_2112_RC	3	12	7	7	9	5	10	1	12	10
ATCATATTGGGGTGCG	alt_2112_RC	7	7	7	10	7	5	7	3	16	8
TCTTCGATGCACCCTC	alt_2112_RC	4	13	13	3	12	7	12	2	13	7
CTCAACCTCTCCTTCA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CTTTTCTCATTGTTCC	alt_2112_RC	37	26	18	26	31	28	40	25	36	32
TTCTCATGATCCCATA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
TGCAACACACGACGCC	alt_2112_RC	6	6	4	4	5	3	4	0	2	1
AGCCACTATCTTTGTG	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CGTACTATATAATTCG	alt_2112_RC	5	17	10	13	16	6	12	7	8	8
TTCTATGTTGTAGATC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CACTCCTGTAGAGCGC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
AGTATGTCTTCGAGTT	alt_2112_RC	34	52	41	47	32	41	61	48	66	36
CTCTAGCGCATGTGTC	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GGCCACGGTGACTGCG	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GCCGGAAAAGTCTTCC	alt_2112_RC	33	44	25	33	49	25	58	32	47	25
GGTGTCGTGCAGAGTT	alt_2112_RC	83	99	98	85	108	81	127	66	128	69
ACCAATATTCTCGCCT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
GCGAGTTTAAGTGGCT	alt_2112_RC	1	4	1	2	5	0	1	0	0	1
TAGTTGGCCCCCTCTA	alt_2112_RC	9	11	14	7	8	5	10	5	8	10
TGTCCGTCTCATTTGT	alt_2112_RC	11	15	9	18	8	13	7	6	16	7
TACGTTTATGGATGAA	alt_2112_RC	29	43	43	42	32	30	52	23	53	31
AGTTGGGCTGGCTATG	alt_2112_RC	36	45	29	38	41	28	44	28	57	26
TCGTAAAAACCTAACC	alt_2112_RC	9	11	12	7	12	11	7	8	19	11
TTGTCCATCATTGCTG	alt_2112_RC	49	58	50	26	38	32	61	16	61	33
GGCTCCAGGTCAGCTA	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
CGATCATCTCTTATCT	alt_2112_RC	42	46	39	26	37	27	52	40	38	31
TAGTATAGGCCTTGTT	alt_2112_RC	0	0	0	0	0	0	0	0	0	0
ATAAGCGGTACGGACT	alt_2112_RC	44	62	70	47	62	59	55	43	60	48
CTTTGCAAGGCTACTC	alt_2112_RC	6	8	11	3	9	4	11	7	6	9
ACAGTTAACATACCTT	alt_2112_RC	5	6	7	3	14	3	11	4	12	0
ATACACACCCTTTCGG	alt_2112_RC	6	3	7	7	7	2	8	6	8	5
CTGACCTTACTGATAT	alt_2112_RC	21	31	17	17	31	15	30	18	35	20
TCGTTCCGGTTCAGAC	alt_2112_RC	18	34	23	25	35	22	19	16	35	17
ACCCCGATCGAATCTG	alt_5979_new	12	54	12	12	53	8	81	11	58	11
TCAGCTCAGTCATGGT	ref_5979_new	11	17	17	17	19	9	22	12	30	11
AGATGCTTGCGTACCC	alt_5979_new	11	13	8	5	20	9	8	5	21	8
CTCATGTCTGCGTTTA	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TTCCCCGACATGAATC	alt_5979_new	0	0	0	0	0	0	0	0	0	0
GACACGGACGTGTGCT	alt_5979_new	19	32	27	19	32	17	31	19	38	27
CTCGCACCCTCATCTC	alt_5979_new	32	45	29	29	32	29	41	27	53	30
CCCGAATCGATTTTCC	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TGAGGGACAGCCGCCA	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TGGTTGGACATGTCGG	alt_5979_new	92	154	99	80	135	71	154	96	172	86
AGGTCGATATAATTAC	alt_5979_new	1	2	8	3	5	7	5	2	7	4
TAGCTCAGTTTGAACG	alt_5979_new	3	4	11	9	3	6	5	5	10	7
ATGCGTTGGGACCGGA	alt_5979_new	157	226	185	151	230	156	241	165	221	143
TTATTATCCCATTACG	alt_5979_new	27	39	33	36	42	23	43	23	39	21
AGGGCAGGTCAGGGGG	alt_5979_new	47	49	47	39	46	57	56	48	58	41
GGGGCCAAAACCCGTG	alt_5979_new	30	36	37	27	52	35	43	26	54	27
CTCGGGCAGTCTACCA	alt_5979_new	5	20	9	13	11	7	25	7	19	11
AAGGTTGAGGGGCAGC	alt_5979_new	48	70	58	37	72	45	71	53	53	38
ACTGTCATTACGCTTG	alt_5979_new	37	53	40	39	69	38	71	28	69	31
TATGCCGGAGAGACTA	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TCAGGGATGAGGATGA	alt_5979_new	0	0	0	0	0	0	0	0	0	0
ACAGTCATTACGCTTG	alt_5979_new	0	0	0	0	0	0	0	0	0	0
GAGATACGCCGCAAAC	alt_5979_new	27	44	46	33	31	39	51	32	47	30
TTGCCGCTATTAGCTA	alt_5979_new	4	2	1	0	4	3	6	1	4	6
GTGCTTCGGATTGTAT	alt_5979_new	56	90	81	61	74	70	86	50	87	49
CTGTATATGAGTCCCT	alt_5979_new	0	0	0	0	0	0	0	0	0	0
CTGCCGGGGGCAGAAC	alt_5979_new	7	11	15	9	11	8	8	7	24	6
GTTACCTATATTGAGA	alt_5979_new	1	4	5	1	9	1	6	2	4	0
GTGTATGGTCAAATCA	alt_5979_new	85	134	132	110	141	74	164	99	161	76
GTTTACAATTCGCCCT	alt_5979_new	101	120	116	98	137	93	139	98	138	87
GTGTTATTCGCAGCTA	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TTTGTCCTTACTGTCC	alt_5979_new	56	72	47	41	80	52	81	44	89	48
TGCGTTATGGTACAGT	alt_5979_new	10	13	10	8	10	4	11	6	17	7
CCACAGGTGTAATGTT	alt_5979_new	56	100	60	52	93	47	88	43	95	45
GATCGGCCACTGTTTT	alt_5979_new	19	26	16	21	17	9	21	19	18	17
TAGTATAGATGCCGCG	alt_5979_new	30	25	28	36	35	20	14	21	30	16
GCAGTGTGTCCCTCAC	alt_5979_new	29	35	24	29	42	26	39	24	39	14
TCGCTATGGGTAATGT	alt_5979_new	12	12	16	18	19	11	22	9	12	13
CCCGATTGGGATTTGG	alt_5979_new	2	1	2	1	0	0	2	2	1	1
GTCCACGCCATTAATC	alt_5979_new	18	28	19	15	22	16	23	9	14	12
GCACTTCTCAGTGTCG	alt_5979_new	32	50	45	22	49	34	51	44	48	25
CTCGGATATCTATGGG	alt_5979_new	95	114	117	70	119	88	105	82	115	67
CTAGCTCAGCCTTTCT	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TGGGTATAGGCAGCAA	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TCTTCTAACTACTTAT	alt_5979_new	18	22	18	17	24	9	21	17	20	8
ATGCGCGGTAGTTGCC	alt_5979_new	12	32	21	13	16	19	25	11	30	12
GGCAGAACCTATTTAG	alt_5979_new	13	27	27	16	26	12	26	15	24	15
AGATATTCTATGTCTC	alt_5979_new	0	0	0	0	0	0	0	0	0	0
GAACCATGCGCTCGTA	alt_5979_new	8	6	7	8	11	6	11	12	11	3
AGTGGTCACCCTTTTA	alt_5979_new	14	18	12	18	21	21	27	10	29	6
ATCTTAGTTTCTGGCC	alt_5979_new	0	0	0	0	0	0	0	0	0	0
AAACGGTTGTGGGCTC	alt_5979_new	0	1	0	0	0	1	0	0	1	0
GGCTTATATTGGAGCT	alt_5979_new	10	13	8	2	10	11	6	9	12	3
TCGTCTAGGACGTGCC	alt_5979_new	0	0	0	0	0	0	0	0	0	0
GGTGGGCTCGTTCAAC	alt_5979_new	34	61	49	44	74	39	71	46	73	41
TCTATTCCCGGTGTGG	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TGGCAGTTAGACGTCC	alt_5979_new	23	27	31	12	29	22	27	20	44	20
TTGGCAGAATTGAACG	alt_5979_new	44	50	59	49	52	37	80	36	68	30
CTGACGTGCTGTCCTG	alt_5979_new	94	133	140	97	132	97	164	117	154	91
TGTCTATCATTGCGCT	alt_5979_new	69	115	68	77	115	63	117	62	124	64
TGTTTTTGCATACCGC	alt_5979_new	37	73	54	48	61	50	94	25	74	45
TGGGAGTTAGAGCTCT	alt_5979_new	4	7	2	7	7	10	5	3	4	2
CATTGCCATATAAGTA	alt_5979_new	10	25	25	17	23	18	33	14	18	9
GATTTGCCCGCGATTC	alt_5979_new	24	36	43	26	51	37	43	25	58	28
TGCGCACGTCACTCGT	alt_5979_new	1	7	4	3	6	5	3	2	1	1
GTCTCGGGTGTTTAAC	alt_5979_new	0	0	0	0	0	0	0	0	0	0
CAGTTCTTTACTAAAC	alt_5979_new	0	0	0	0	0	0	0	0	0	0
AGCCCCGCCCTGGTTA	alt_5979_new	5	10	2	5	7	5	4	5	5	9
CTTTTAGCTGAGCCGC	alt_5979_new	17	41	13	21	25	10	19	9	39	20
TACTTCTCAGTTGATA	alt_5979_new	0	0	0	0	0	0	0	0	0	0
TAGTCTCGCCTATGCG	alt_5979_new	35	55	47	43	56	33	68	36	82	28
TCGGATGGGATCGTTG	alt_591_negative	0	0	0	0	0	0	0	0	0	0
CGATTTATTCCTTTCA	alt_591_negative	0	0	0	0	0	0	0	0	0	0
CCATTAATCTATCATG	alt_591_negative	0	0	0	0	0	0	0	0	0	0
ACATTGCCGTGTTCGA	alt_591_negative	34	40	33	31	23	23	46	32	39	29
ATGTCGTCGATACTGC	alt_591_negative	48	43	63	50	66	38	44	45	41	42
GATCTTTAGAATTATC	alt_591_negative	23	11	23	19	12	14	20	15	10	16
CCGTATTCTTGGTAGC	alt_591_negative	16	8	18	9	10	9	11	10	16	3
TCAGACCGAGGGCTGC	alt_591_negative	41	58	53	43	52	39	59	37	56	32
TTGTAGGCGGTCTGAC	alt_591_negative	0	0	0	0	0	0	0	0	0	0
GTCAGTATTAGCGTGT	alt_591_negative	6	13	10	8	5	8	6	12	11	16
TTTATACAACCCCGGG	alt_591_negative	11	6	16	4	7	15	5	15	5	13
ATGTTCTATCGTGGTT	alt_591_negative	32	35	47	43	28	46	40	32	32	41
TGGGCCGACAAGACAC	alt_591_negative	21	21	26	26	23	17	29	29	33	21
TGGATCATCGGTGATG	alt_591_negative	219	228	268	240	205	201	225	240	252	193
TTCTCTCTTGGCTCAG	alt_591_negative	12	16	15	13	16	13	12	15	14	15
GAGGACGCGCTATGGT	alt_591_negative	67	73	68	48	60	45	62	62	59	37
CCTTCATAATCATTCC	alt_591_negative	28	18	12	21	9	13	10	7	15	8
AGAGCATCTAGCTTGG	alt_591_negative	1	6	4	4	0	4	7	7	6	7
CGGAGTCGCTGGGGTA	alt_591_negative	62	64	71	50	44	63	58	78	70	72
TTTGTTTGCGGTTTCT	alt_591_negative	16	20	37	18	20	28	18	20	21	23
TATGCCATTGACCTCT	alt_591_negative	3	5	3	8	5	8	8	5	10	2
TAACTCATAAGGTTCT	alt_591_negative	0	0	0	0	0	0	0	0	0	0
TACCAGCGGGTCATCG	alt_591_negative	17	29	25	18	21	18	23	27	19	23
AACCTGCGCTTGTATG	alt_591_negative	7	7	2	10	13	10	15	14	11	7
AGTTTTCGGGCCTATA	alt_591_negative	5	7	6	4	11	4	13	6	3	5
TGTTTGAGTTCCATTT	alt_591_negative	11	11	6	7	3	10	9	4	13	10
CGAGGGTTCTAGTATG	alt_591_negative	5	12	5	8	9	10	9	12	7	5
ATCCTGGTTACCGTCC	alt_591_negative	0	0	0	0	0	0	0	0	0	0
TCTTCGTGTTTTACGT	alt_591_negative	29	38	50	39	54	43	39	54	46	32
CCCATTGTTGTCGTTC	alt_591_negative	48	76	60	63	115	39	90	49	99	42
GTTCGCAGAGCTTGTT	alt_591_negative	33	61	52	41	52	47	60	44	65	38
ACCGCGCCTACTGCCC	alt_591_negative	3	2	0	0	0	0	1	2	1	2
TGTTTCCTATGGTACA	alt_591_negative	108	139	173	135	107	145	138	127	129	124
TATTAATTATATTCTC	alt_591_negative	37	18	48	46	25	26	31	30	36	39
GCCGTTGCCGCCTGGC	alt_591_negative	5	8	2	1	6	3	7	1	3	6
ATCCTCATACGAGCCT	alt_591_negative	25	12	24	14	18	12	21	19	11	16
GTACCTTCATTAACCT	alt_591_negative	0	0	0	0	0	0	0	0	0	0
TGTCTACCTGCCGATT	alt_591_negative	0	0	0	0	0	0	0	0	0	0
CCGGGGAAGTTCTTCC	alt_591_negative	1	7	1	1	8	5	6	3	3	2
TGGGTAAGCGGTGGAT	alt_591_negative	102	44	106	94	67	88	62	84	64	89
TGTTTTCCCGTGCTCA	alt_591_negative	2	1	4	1	2	1	3	2	0	5
CCTGTTTGACGAGTAT	alt_591_negative	0	5	7	2	5	1	3	5	1	2
GGGGATGGTTACGACC	alt_591_negative	121	96	147	108	105	125	117	102	118	88
CAGAGATTCATCATTG	alt_591_negative	0	0	0	0	0	0	0	0	0	0
CACCGTTCAGTCTGTA	alt_591_negative	0	0	0	0	0	0	0	0	0	0
GGCTACTTTTAGATAC	alt_591_negative	12	11	15	16	19	15	17	12	25	13
TTTTGGCCCGCTTAGC	alt_591_negative	85	80	113	109	94	80	98	98	81	90
GTTCTAGGAACGTTAT	alt_591_negative	44	53	65	55	53	44	60	47	55	42
TATGTAACCCGAAGGA	alt_591_negative	0	0	0	0	0	0	0	0	0	0
CGGTGGGTCGACGGAG	alt_591_negative	0	0	0	0	0	0	0	0	0	0
GGCACTAGCCCCAGGA	alt_591_negative	19	19	32	26	27	21	27	20	37	22
CTCCACTTGTTTCATC	alt_591_negative	0	0	0	0	0	0	0	0	0	0
TTGCCATTTAACTATA	alt_591_negative	24	23	41	27	22	27	34	36	33	18
AAGGATGGGTCCGTTG	alt_591_negative	13	20	25	17	12	19	13	8	14	13
TCACGGGTTCGGCTTT	alt_591_negative	5	13	10	18	15	17	13	15	10	11
TGCTGGCTGACTGTTT	alt_591_negative	0	0	0	0	0	0	0	0	0	0
ACAATCTACTTTGGAA	alt_591_negative	10	19	5	2	1	9	3	7	7	5
GATAGATGATGCTCAG	alt_591_negative	0	0	0	0	0	0	0	0	0	0
ACCGGGCCTTAGAACA	alt_591_negative	0	0	0	0	0	0	0	0	0	0
GGGCCTCCCGCAACAT	alt_591_negative	35	37	45	44	31	39	38	36	40	38
CCCAACCTACAGTTTC	alt_591_negative	8	13	8	9	13	3	7	9	9	6
GTGGTTTCGATTTCAG	alt_591_negative	0	3	8	1	1	1	1	0	0	2
TAGCGATCTCCTTTTG	alt_591_negative	20	37	38	38	45	35	47	41	49	25
GTAAGCGAAAGACGCA	alt_591_negative	12	4	5	6	9	6	6	6	3	3
AGCATACGATTATTAA	alt_591_negative	23	23	21	29	28	27	20	19	20	21
GGCTGGGATGATGGGT	alt_591_negative	105	94	144	88	98	98	88	99	86	101
GTCGGAAGCAGGAAAT	alt_591_negative	1	8	6	9	9	11	2	2	4	3
GTCATGACCTTCTGTC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
AGCTTTATATTTTGGT	ref_6043_new	79	27	83	85	37	52	50	57	54	52
TCGATTCTTCTCAGAT	ref_6043_new	54	30	62	57	37	32	37	34	51	53
GTGGCCCTGCTGTACG	ref_6043_new	40	15	42	24	36	33	26	31	25	27
GGTTTATAAGGAGTTG	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TACCGGATAATCAGGT	ref_6043_new	106	81	120	121	82	103	102	105	74	95
TCTCGTTGTTTTGATC	ref_6043_new	92	46	112	102	80	88	57	124	83	98
TAACGCTCCTGGATAA	ref_6043_new	87	58	102	93	73	72	57	78	65	90
TTCATGCTTCCATCTA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CTTCCATAGCAGCTCA	ref_6043_new	8	6	15	11	12	9	16	9	12	19
ATATCTTGCTTTTAGT	ref_6043_new	100	87	109	115	91	98	81	90	83	93
TGTGCACGTGGTGGTT	ref_6043_new	0	0	3	3	2	1	3	2	3	1
ACGCTTCCTATTGCAA	ref_6043_new	120	90	125	117	64	120	83	94	100	91
CGACTATGGCACCGAT	ref_6043_new	36	24	45	34	16	24	32	31	26	21
GCCCGTAGGCGCGGGG	ref_6043_new	103	75	153	129	79	113	71	119	66	131
ATGATGTAATCTATTT	ref_6043_new	27	5	33	31	14	36	16	26	5	18
ATTCTCAAAGGTATTT	ref_6043_new	44	27	63	70	38	63	46	51	28	49
GTAATAACGCTTTAAC	ref_6043_new	372	224	432	364	277	376	268	333	295	317
CGTTCTCTGGAGTTCC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CGACGCCGAATCAAAG	ref_6043_new	60	37	53	65	30	44	46	60	36	48
ATGTTTTTTGATGCCT	ref_6043_new	71	41	82	89	52	75	42	69	36	64
GAATAGGTTCGTTGTA	ref_6043_new	27	31	39	26	26	33	30	32	17	34
ATTCCCCAGGCTGCCT	ref_6043_new	5	3	2	7	8	5	1	6	2	3
CATATGTCCCGCGCCT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TAACGGTCCTGGCGGG	ref_6043_new	51	42	78	82	48	67	43	69	52	63
ATTGACGGGCCTTGTT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TAGAGGTTGCCGTTTT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TTTTTCGCTTGTGGAG	ref_6043_new	47	25	33	49	16	35	18	45	35	31
CCCGGTTTAGGGTATC	ref_6043_new	47	56	67	47	55	43	76	47	54	37
CCTCCGCCCGAGTCGC	ref_6043_new	213	131	257	249	129	239	130	233	140	194
GCCTTTGTCCGTGCTA	ref_6043_new	84	146	110	135	166	83	131	103	157	101
CGTTCAGGTCTCTGGG	ref_6043_new	64	37	76	67	48	64	49	58	40	54
TGTATGTATATAACCT	ref_6043_new	62	65	70	56	56	50	68	36	49	45
CTGATTGGTATATTCA	ref_6043_new	41	25	48	53	35	43	26	41	48	44
TACTTTTTGTCAGTTG	ref_6043_new	44	38	43	31	39	48	45	45	42	48
GGGCCTCGCATCGTCC	ref_6043_new	63	39	57	57	49	42	33	41	53	61
GTTCACCTATGTGGTG	ref_6043_new	11	21	17	7	17	12	23	7	23	7
CCGTCACAGGGGGTGG	ref_6043_new	31	36	27	25	28	21	35	36	33	13
CGCGGCTTACAGCGAC	ref_6043_new	56	37	48	63	47	48	42	42	60	38
GTCTTACACGCGCCAC	ref_6043_new	28	34	41	37	28	19	19	36	24	34
GGTTTAACAGCATGTG	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GTCTGCCCCTATGGAG	ref_6043_new	13	2	21	5	2	12	5	9	6	5
TGGCGCGCACAATGAC	ref_6043_new	155	117	178	147	135	134	133	124	130	137
GTCTTGCAAATCCCGG	ref_6043_new	8	3	14	10	3	6	1	4	3	3
GACAGCATACGGACAC	ref_6043_new	33	25	26	31	24	26	29	10	20	28
AATAGATCAATCGCCC	ref_6043_new	3	0	5	2	3	3	0	5	3	1
TCCCATTCTGGTCACT	ref_6043_new	20	25	13	14	24	14	15	18	7	11
AGTTGTTGGGCCCTAC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TACATACTCAGTGCAT	ref_6043_new	59	47	59	52	27	57	51	47	31	41
GCGTAAACGTGCGGGC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TCCAATCTTCGGTATT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GTTCTGTGGCACACGG	ref_6043_new	26	19	19	33	14	18	20	27	14	24
ACAACGTTTCCAAGCT	ref_6043_new	37	15	24	24	16	23	13	20	26	21
CCATAGGTCTCTCTTT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TAGTCTACCTCTAACG	ref_6043_new	6	7	9	12	10	10	6	11	4	6
ATAGTTCCAATCGCGA	ref_6043_new	1	0	5	2	2	3	2	5	3	2
CGACACTATTTTCGTA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TGCCAATGTGCCGGGT	ref_6043_new	8	5	13	8	6	4	7	1	2	5
CAGGCTTATAATTAGC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TGGATTTCCCTTACAT	ref_6043_new	90	77	120	97	94	103	72	95	77	73
CCCTCCCCAGCGTCCC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GCTATTTTAGTCCAGT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GCTGAGTACTCGCTAT	ref_6043_new	21	10	23	22	15	9	15	18	10	7
TTTAACTAGGCCACCT	ref_6043_new	118	87	143	96	91	79	86	103	83	87
TGTTGTGGCCTCTTAG	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GGCGATAAGCGGTGGG	ref_6043_new	8	9	4	9	9	11	10	7	8	6
CTATATGTATCGAGTT	ref_6043_new	14	12	25	24	21	27	17	17	17	17
CTGTATCGGGTAGCCC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CCGGTAGATTTTTCAC	ref_6043_new	56	32	48	67	37	62	58	44	51	58
GAGATCCGGCTTACCG	ref_6043_new	119	89	170	138	87	131	106	109	93	127
TCTATTCATTTCTTAC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TCAAGTCCCCGCGGGC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
AGTGTAATTCATTTGC	ref_6043_new	332	299	421	388	268	401	291	373	309	331
AGCCTGCCCCTGTGTG	ref_6043_new	7	6	8	12	14	8	10	8	12	5
TCCGGAGTGTTTGTGT	ref_6043_new	16	15	19	17	15	11	9	14	22	12
GTAGACCGTTGATTGT	ref_6043_new	47	41	71	35	42	54	51	52	40	48
TTCATTCATCGCCTAA	ref_6043_new	18	12	34	16	17	24	14	14	19	24
TCAACAGGAACGTATC	ref_6043_new	72	45	48	60	37	45	45	65	44	49
AACCTTAGTTTAAAAT	ref_6043_new	47	18	47	40	19	42	22	46	25	32
GCCTAGCTCCGGGGAA	ref_6043_new	7	12	10	7	6	11	6	8	7	11
TAAGCCTCGGCGTGTA	ref_6043_new	13	16	27	12	12	13	18	20	11	17
TTTACCGATTAATTGT	ref_6043_new	123	75	124	110	79	103	80	88	92	77
CGGTAGGTGATTATTT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CATAGCCAGTGTTGCC	ref_6043_new	31	82	51	58	77	25	59	28	74	36
TTCCGTATCATTCCAG	ref_6043_new	32	21	52	34	33	37	21	43	18	31
CTCTACCCGTTTCACC	ref_6043_new	22	11	21	14	10	15	16	13	8	17
CATCTTCTAGCCTTGA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GGAGCGCTTCTGCGAA	ref_6043_new	35	49	47	30	20	42	22	38	30	28
TTTCATGCCACCTACC	ref_6043_new	10	17	16	17	13	23	12	20	13	11
TTTGACTGAGGGGATT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TCTATGTGACGTCCAT	ref_6043_new	0	0	4	1	0	2	3	3	1	1
AAGGCCTGTCATGTCT	ref_6043_new	86	106	137	117	100	116	110	101	126	95
AAAATCAATAGGTAGA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
AGTTGCCATCATGACC	ref_6043_new	19	4	31	19	9	18	6	13	9	6
TAATTTGTTTCGGGCA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
ATCCAGTTGTCAATGA	ref_6043_new	34	28	30	36	26	26	33	26	17	13
TACAAATTGCAATGTT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TAGCTAAAGGTAGCGG	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TTCGGTCCAACAGTTC	ref_6043_new	12	15	19	18	10	20	9	17	19	19
TCTTGAAGATCTAGGG	ref_6043_new	93	78	125	80	73	77	85	83	88	108
CTAATCATCGACTCTT	ref_6043_new	29	18	24	30	18	25	15	20	18	12
TCTGTTCCTGATGTTA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CACAGAGCGTCTTGGT	ref_6043_new	122	83	143	121	101	118	87	110	90	90
GCTGGGTGTTACTAAA	ref_6043_new	47	25	58	43	38	32	27	30	36	28
TCCAGCGAACGCAGAT	ref_6043_new	9	13	17	7	13	21	8	8	14	12
TTCTCTGACTCAGCAG	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CACCATCGATATGTTG	ref_6043_new	104	82	154	121	107	111	104	104	107	106
AGACCTTGGCGTCCCC	ref_6043_new	59	65	60	64	60	61	54	53	58	53
ATGATTTCTCCCCTCT	ref_6043_new	46	50	61	45	54	50	70	32	52	30
AAGTGCCTTTGCTTTA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GTGCTTACTTCTAGGA	ref_6043_new	113	90	123	129	111	108	98	113	92	96
TATAATTTTCTCAGAA	ref_6043_new	57	53	98	69	42	85	43	48	61	81
CACGTAGACTCTCCCG	ref_6043_new	25	51	28	28	44	14	60	19	68	26
ATATTTCTGGGTGGCA	ref_6043_new	6	3	6	2	6	8	4	3	4	5
CTGGTGTCAACTCTTA	ref_6043_new	21	20	26	22	18	28	13	29	8	34
TATGGATAGTTGTTGG	ref_6043_new	153	120	209	173	116	144	132	131	135	150
ACGCTAGTGTCGGTGA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GTCCGGTCAGGGGTTA	ref_6043_new	64	79	71	65	97	46	90	60	90	52
TTGCCGACGTTGGAAG	ref_6043_new	9	9	28	11	11	15	14	8	8	10
CATCAGAGATCGGAAC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GGTATTGTCAAGTCGT	ref_6043_new	186	166	226	246	174	209	159	206	158	169
TCCGGTGCTTTTAGCC	ref_6043_new	62	48	73	69	38	50	50	47	53	44
ATGCCTAAACCATCTC	ref_6043_new	161	119	221	165	118	166	137	166	141	133
GTTCCGGTCGCCTTCC	ref_6043_new	9	8	10	14	12	11	9	13	15	6
TTGTGCGGTGTATCGG	ref_6043_new	20	13	16	22	13	20	20	22	15	17
GCTCTTATTTCCGCGA	ref_6043_new	192	153	208	168	138	173	156	172	143	175
TTGGTGTCCTGCTGTT	ref_6043_new	132	75	162	143	110	112	95	137	102	128
ACGTCCCTCAAGTGCC	ref_6043_new	41	25	51	33	17	29	24	33	26	31
TCTTCCTTGGGATCCG	ref_6043_new	55	32	62	63	37	64	29	59	30	56
TGGATCGCTCGCTATT	ref_6043_new	5	6	19	17	17	12	8	13	12	16
ATGCTATCCGGGTTTC	ref_6043_new	80	66	95	110	75	98	67	98	70	69
TCTCACCTTAATCGGT	ref_6043_new	53	35	56	42	43	37	59	49	60	48
TCGGGCCTGAGCTTCC	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TGGAAGCTCATTTTGT	ref_6043_new	114	76	119	131	72	101	63	116	97	99
TGGAAATGCGTCATCC	ref_6043_new	183	107	203	191	122	179	125	170	128	138
TTTAGACTGTAAGAAT	ref_6043_new	44	42	40	51	40	43	44	49	41	46
TTTGCACTTTGGTTTC	ref_6043_new	60	34	47	53	38	47	30	55	39	53
ATTTTGCTATACTTCA	ref_6043_new	54	61	93	56	56	64	68	58	53	49
GTAGCGCTCAAAGTCA	ref_6043_new	34	17	31	21	19	24	13	33	11	23
GGAACCGATCTGGTGT	ref_6043_new	0	0	0	0	0	0	0	0	0	0
TGGACGGGCGCCATGG	ref_6043_new	191	108	235	190	108	187	107	181	104	154
CCGTGCAGAGCTCTGT	ref_6043_new	74	80	129	100	70	81	66	71	59	65
GGTACCTCAGCAATAA	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CGGATCATATTTTTTG	ref_6043_new	0	0	0	0	0	0	0	0	0	0
GTGGCTCTATATGTTC	ref_6043_new	11	9	13	18	6	10	11	14	7	5
CACCTCAGCCTGGGGG	ref_6043_new	0	0	0	0	0	0	0	0	0	0
CGCCTTTATTCGCCTT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
TACACACGTTACTGCA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TCGCTTAAATCTTTTC	alt_6045_new	21	58	30	33	39	33	41	24	46	20
CGGTGGAATGGGTCAT	alt_6045_new	10	8	7	1	7	4	9	6	15	6
TTATTAGTATTTGGGC	alt_6045_new	7	4	9	4	5	5	5	4	14	5
ATACGGATGACTTCTC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CAGGTTACATTTCTAG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GATCAAATGAGCCAAA	alt_6045_new	61	59	62	51	80	58	87	48	81	45
CGGTACCCGACGATGG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GATCACGCTATGACCA	alt_6045_new	9	25	6	13	19	8	12	4	19	12
TGCAAGCAAGCGAGCC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GCTACCCTTCCTCTTA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CTTTTACCACGGTCTG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GTTCCCGGAGGTAGTT	alt_6045_new	21	38	27	34	39	34	44	19	40	36
TCAGCTTTCTTTGTTT	alt_6045_new	39	80	74	50	80	46	75	52	77	41
GTTCCCGTCCCTTGAT	alt_6045_new	39	49	39	38	60	23	57	27	54	34
CACTAGGTGTGTTACG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CGTCTGATGTAACTCG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
ATCAGCGTAACTGGTA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GATTCATTTTAATTTA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CATAACGTGTATTGCT	alt_6045_new	19	20	21	8	12	15	25	25	16	15
TACAACCGTCCTATCG	alt_6045_new	26	33	26	19	44	22	36	14	35	28
AACTTGCAAGGGTTGG	alt_6045_new	1	3	3	5	2	1	0	1	5	0
TTGGTCCGCTCGATAT	alt_6045_new	5	10	3	1	11	3	6	1	11	4
GAACACCCCGTGTAGC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GGAGGCCGCCAAGGTT	alt_6045_new	44	57	52	42	70	37	56	28	61	45
CTGTGCAGTGCTGTCA	alt_6045_new	131	221	154	112	217	128	251	137	260	101
TGCCTTGGCCAGCTCC	alt_6045_new	101	226	148	120	166	107	179	127	194	101
TATATTCTGGAAGATC	ref_6045_new	157	230	215	176	247	143	221	159	245	155
CACGGTGCAACATATT	alt_6045_new	9	13	10	10	17	8	12	10	15	5
TTGGTCTTAGGGGGAT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TAAGCCCACACATTCT	alt_6045_new	0	7	4	7	12	3	11	6	9	0
ACCACAAACGACTTGC	alt_6045_new	2	35	8	4	20	9	25	4	31	9
AGTGTTGCTTCCCGGA	alt_6045_new	6	12	11	4	16	10	7	10	14	2
TTGGGAAAGCTATCTA	alt_6045_new	46	74	48	32	53	53	60	30	72	41
TCTGGCCTTGGCCTCA	alt_6045_new	22	51	32	32	52	34	51	23	62	35
TAAACGCGGGGGGTTT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
ACATACATCGGAACTC	alt_6045_new	4	4	4	2	5	1	5	4	8	3
ACATGACGAGTTGACT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TATCACCACCATAGCG	alt_6045_new	21	42	21	21	40	19	29	24	47	12
GTCACTTGTTCTTTCG	alt_6045_new	34	45	23	34	34	36	47	33	56	39
ATCTTGGACAACCATC	alt_6045_new	27	55	33	32	60	32	74	20	50	22
AAGGTTCTCATTCTAG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GTTTTGCTTTCGAAGC	alt_6045_new	69	114	83	63	93	74	106	67	106	64
CAGTCCGCTGATGAGT	alt_6045_new	55	61	43	41	87	50	65	48	78	42
GAGCCCTTGGTGTACC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TCCAAGCTTTGCCCCC	alt_6045_new	1	10	5	5	6	3	9	4	6	0
ACACCTAGTTGCGTGT	alt_6045_new	26	57	34	32	64	32	51	25	55	30
TCACCGTTATGTTTTA	alt_6045_new	0	2	1	4	4	3	1	3	4	2
CTTAGGCTATAATCTC	alt_6045_new	12	10	13	10	22	11	19	6	11	8
CACTCTAACCGTGGTC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
AGTTTGCGATTCTGGG	alt_6045_new	6	2	4	5	1	4	3	5	6	6
GCGTCGAATAATGGTG	alt_6045_new	93	160	114	101	144	75	146	69	136	87
GTGGTCCATTCTCTGG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GGGGCGTTGCCGACCT	alt_6045_new	17	42	22	22	50	21	37	22	46	14
GTCCATGCATTTCTAC	alt_6045_new	10	16	12	6	15	11	17	7	17	15
CTCTTTGCCGTTATTT	alt_6045_new	21	44	27	36	59	19	37	24	63	26
GCAGTAAATCCCCGCT	alt_6045_new	3	20	4	1	13	4	12	1	8	7
AAACTTATTTACTATT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
ATAGTTGTCCCTCGTA	alt_6045_new	34	58	47	40	61	28	69	30	65	30
CAGCGCCCTAGGCTTA	alt_6045_new	3	6	5	4	6	5	3	7	5	4
GCCTCCTGAGCCCCTG	alt_6045_new	41	38	36	46	48	28	40	37	43	27
TTGTCCGTCCGGAAAG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
AAACTTGTATTTACTA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GATTTGCATCCGTTCC	alt_6045_new	16	20	19	13	23	20	30	15	15	15
AGTGGAATTCACCTTG	alt_6045_new	25	42	26	31	32	19	40	24	33	23
TGCCCTTTGTTTCCCC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GTCCGGCTTGATTTTT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CACAGCAGTTTTGAAC	alt_6045_new	79	177	118	101	210	86	204	77	221	77
GTTCTACCTGGAGGGA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TAACTCCGGTTGCGCT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GTAGTTTCCTATGTGC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TCGATGAGTACAGCTC	alt_6045_new	1	4	1	7	8	1	3	3	8	0
TGACAGGCCATTCTAT	alt_6045_new	7	6	5	4	9	8	10	6	1	5
GCTACCTATCGAATTA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TCAAACCCCGGTACTT	alt_6045_new	16	29	11	12	22	7	25	15	28	8
TTTAAACGTTACCCTC	alt_6045_new	42	69	39	37	65	32	74	37	76	22
GCGGGGTTTTGTTTTG	alt_6045_new	1	3	2	3	3	1	3	0	5	2
ATCAGTGTATCACGTG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TCCACGATCACTTAGA	alt_6045_new	15	21	13	9	24	7	22	10	20	5
GCAGCATACCCCATGA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TTACACCATCGAGATG	alt_6045_new	38	45	34	29	32	33	35	31	35	37
GTTTCTCCTGTCTATT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CATGTCCCATTATAGA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CCTTCTGGAGCGCTTG	alt_6045_new	60	112	69	49	93	50	115	49	103	37
TGCGGCGGCTTTTTTC	alt_6045_new	67	91	102	98	90	76	85	71	92	72
CTCCGTAACTATTCTA	alt_6045_new	8	21	14	13	24	8	10	7	16	8
CATGTACTGTCCGGAG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CTCTTTACTAATGTGG	alt_6045_new	9	13	16	8	20	23	18	15	15	12
TGCTCATAATTTGGTT	alt_6045_new	44	74	65	59	70	28	100	44	80	48
CTTCTCACCCCAGCGG	alt_6045_new	7	27	12	8	27	10	17	11	15	4
AGTATCGCGGAATCCC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TGTGTTTTTAATTACA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CCCATTCTATACAATC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
AACGGATTTAGTAGGG	alt_6045_new	9	8	0	5	10	2	6	5	6	4
ATTATCTTGGTTTAGT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
ATTATGTGGTATATCC	alt_6045_new	100	136	116	101	156	119	143	96	186	112
TGGAAGCAAACGTGCT	alt_6045_new	14	8	17	8	20	14	18	19	25	10
AGTGCCGATCATCACG	alt_6045_new	11	12	6	14	5	11	19	9	12	9
GGCTGCGGTGATGCTG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TCTATTTTAGGCTTTC	alt_6045_new	131	159	129	114	167	144	190	113	187	113
CTCTTCCTTCATCCTG	alt_6045_new	32	42	38	37	53	27	56	32	47	26
GTGCTGTTACTCATAT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TTCGTCCCCTTCCCGA	alt_6045_new	50	98	46	57	101	46	97	40	114	40
AGTGGTCTTCTATCGC	alt_6045_new	3	19	13	10	10	9	14	8	14	5
CGAGTCGCGGGGCACA	alt_6045_new	37	59	48	37	52	29	55	40	49	36
ACGGACAGATGTCGTG	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GTATGTGAGACTTGCA	alt_6045_new	6	6	5	7	5	6	15	8	7	3
TGCCTGGGTACCCCTA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
ACGTGGCCTGCCGGTG	alt_6045_new	43	86	69	53	70	49	96	42	66	51
ACTTTTTGGGGTCTCA	alt_6045_new	1	5	3	2	2	4	10	2	10	3
TGGTGTCTTGTGTTTA	alt_6045_new	35	52	34	36	45	49	76	31	46	28
CTGATAAGCGTCCCGC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GCTCGCTTTATCACTT	alt_6045_new	6	3	3	3	1	5	3	3	5	2
CTTCATTCTGATTACT	alt_6045_new	28	60	37	29	58	36	58	40	63	24
GTCCAAGTTCTCGAAA	alt_6045_new	6	16	18	11	21	7	21	14	36	4
CTGGTAGAGTACGGTT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CACCTCTCATAGTTGT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
TTTCGCAGACTCGTTC	alt_6045_new	15	30	23	21	31	15	38	21	32	13
GCGTAGGAGTATTGCA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GGGTCTTATGGTTAGT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GTGGCGGGGCATTTCG	alt_6045_new	5	15	6	10	12	3	14	4	14	11
GTCGCGCTTTAGCACT	alt_6045_new	32	61	40	58	79	36	80	40	84	41
CTAGTTTCTTTAACTT	alt_6045_new	4	8	5	3	7	1	6	5	10	1
CACGACGGACCGTTTT	alt_6045_new	19	33	26	25	38	25	45	27	32	16
AAATCAAGGGCTGTAT	alt_6045_new	2	3	1	6	5	1	3	3	4	5
GCATATACCATAGGCT	ref_6045_new	43	31	51	29	65	27	49	28	50	32
TACATTAGGCAGAGTA	alt_6045_new	4	5	9	6	11	4	15	5	7	4
ATTTTCATATTCGTGC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
ACGGCGCGTTGTATTA	alt_6045_new	5	2	6	0	2	2	2	5	2	3
AGCTTTGGTAGATCCC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GTATTACGAGCCTTAA	alt_6045_new	22	35	29	31	38	22	50	34	39	22
TTTTTAATCCTCCTTC	alt_6045_new	14	21	15	15	12	9	25	6	28	12
CAGAGATGAATCCCTT	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CTTATGCGACCGGTGC	alt_6045_new	23	32	20	24	30	12	38	23	25	16
GCCCCATGCCGGGGAC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CTCTGGACAAAGGAAC	alt_6045_new	0	0	0	0	0	0	0	0	0	0
CGCTACTAGAGGTCGC	alt_6045_new	38	78	69	48	75	51	63	33	86	45
CCTTAAGACTGGTCGC	alt_6045_new	6	7	18	9	10	9	15	9	20	11
AGTTACCTCGTATCGT	alt_6045_new	14	35	13	18	27	12	28	14	29	10
TAATATTCAGTCGTTA	alt_6045_new	0	0	0	0	0	0	0	0	0	0
GCCACTTTAGGGGCCC	alt_6045_new	15	28	25	21	29	15	21	17	35	14
TGGCCTCGTTTTTCCG	alt_6029_new	8	7	10	15	17	4	10	8	11	4
TTCCCTCCAGTAAGCT	alt_6029_new	0	0	0	0	0	0	0	0	0	0
GTCTTAATTGGTTGTG	alt_6029_new	19	36	26	17	40	19	39	22	35	19
GTAGGCACGTTACAAT	alt_6029_new	6	13	7	9	18	14	17	4	18	12
AGGGTTGCTTAATTCC	alt_6029_new	13	30	13	6	23	7	27	13	27	10
ACAGTCCAGTCTCTTT	alt_6029_new	0	0	0	0	0	0	0	0	0	0
TTAGTTTTTGTCAGAG	alt_6029_new	0	0	0	0	0	0	0	0	0	0
ACGGTTGCGTGTTAAA	alt_6029_new	0	0	0	0	0	0	0	0	0	0
AAAAATCGAGACTTAG	alt_6029_new	2	4	2	1	2	3	6	5	5	4
TAGCATCCTACGTACA	alt_6029_new	0	0	0	0	0	0	0	0	0	0
CTATGGATTATCCTTT	alt_6029_new	13	23	15	10	21	17	19	5	13	11
GTATGCTCCTTCACCT	alt_6029_new	21	34	25	16	34	25	42	14	33	16
ATTATGGTACGCTAGT	alt_6029_new	89	146	99	96	140	76	103	75	134	82
GCTCCGCGCCATTGTT	alt_6029_new	161	296	209	168	321	155	295	157	348	162
ATACATGATTCCGTTT	alt_6029_new	10	12	8	8	3	11	12	12	10	12
ACAGTTCCTGAGCCGT	alt_6029_new	3	7	5	4	8	5	12	3	8	12
CATGGTCTGATTAGTT	alt_6029_new	0	0	0	0	0	0	0	0	0	0
GGGTAGGGTTTTCCAC	alt_6029_new	26	27	19	19	29	13	35	9	38	22
CATGCATTTCTTCGGA	alt_6029_new	0	0	0	0	0	0	0	0	0	0
GCCTCTGTATGACACT	alt_6029_new	0	0	0	0	0	0	0	0	0	0
ACATTCATTATCGCGG	alt_6029_new	0	0	0	0	0	0	0	0	0	0
AGGGTTGTGATTTTGG	alt_6029_new	0	0	0	0	0	0	0	0	0	0
CCGTTTACAGTTGAGC	alt_6029_new	6	11	7	7	8	8	8	5	13	1
GCCGTTAGTTAGGGAC	alt_6029_new	14	21	13	15	46	17	35	13	27	21
CACAAGTTAATAATCA	alt_6029_new	21	28	34	29	36	19	37	10	37	16
ATTAATACATTGCCTT	alt_6029_new	35	47	48	33	38	15	51	47	56	24
TCCGCCCATCTCCTTT	alt_6029_new	21	25	22	13	24	20	30	10	34	16
CCTTATGAATTCTACC	alt_6029_new	7	13	12	8	15	10	22	12	17	2
AGCTGCGCATCCCGCG	alt_6029_new	31	83	75	36	116	40	76	55	112	50
GCTGAGTTCGTGTAAT	alt_6029_new	9	38	14	20	24	21	15	13	24	21
TCGTGTGATTTCGGGC	alt_6029_new	51	99	52	41	87	51	76	70	102	45
ATTGCGTACTCGACGT	alt_6029_new	5	16	15	15	21	7	28	10	20	7
CTCACTTCATACTAAT	alt_6029_new	4	18	10	6	18	11	20	11	16	8
ACGCCTATATTTCTGT	alt_6029_new	17	29	22	23	20	16	34	22	27	16
CCTGCAGACCTGGTGG	alt_6029_new	8	9	5	9	12	6	5	6	10	4
TTGGTCTATCGCGCTC	alt_6029_new	0	0	0	0	0	0	0	0	0	0
CTTATTACTAGATGGC	alt_6029_new	62	126	80	66	120	69	102	77	122	63
CTCGTACTGGATGCAC	alt_6029_new	2	7	1	5	5	4	9	7	8	5
GGAGTTAAGAAATCGT	alt_6029_new	37	69	59	47	70	50	70	43	64	46
TCGTGCGTTTCGATAT	alt_6029_new	5	14	11	9	9	5	8	6	5	10
GTGGACGCAGGAAGGC	alt_6029_new	37	58	31	34	53	39	63	33	55	18
CGTCGGTTAAATTTTT	alt_6029_new	23	24	18	18	38	25	35	19	38	15
CACTCATACTTCGGCC	alt_6029_new	28	70	38	25	83	25	81	16	82	20
TCTCACTCTCGGCAGT	alt_6029_new	43	61	31	35	55	32	62	19	57	36
ACGTTCGTTACTTGCC	alt_6029_new	29	61	18	29	68	25	52	30	73	25
ATGCCGCGAGCCTTAT	alt_6029_new	26	72	38	29	59	22	58	35	49	37
CTGGCTGCATCTTAAT	alt_6029_new	1	1	2	1	2	1	3	4	2	1
ACCTTAGTAGAATTGT	alt_6029_new	19	28	30	29	30	13	31	13	28	16
CTGGAGATTTTTCTTG	alt_6029_new	0	0	0	0	0	0	0	0	0	0
CCTCCGTGGCCTGTGT	alt_6029_new	25	46	32	14	48	18	48	17	56	18
CGTCGATTAGCCACGT	alt_6029_new	25	33	16	17	23	23	21	19	27	15
CTAGGCCGACGCCAAA	alt_6029_new	0	0	0	0	0	0	0	0	0	0
TCTCGGCAGATTAGCT	alt_6029_new	7	7	7	8	15	7	11	6	14	4
GGCTCAGTAATTTGGT	alt_6029_new	2	8	11	4	9	5	7	5	13	2
GTTTAAATGTTGAACA	alt_6029_new	11	18	4	8	18	11	31	10	17	5
CGCTATTGTTCCATTT	alt_6029_new	32	50	52	38	48	38	60	22	47	23
AAACTAATATGACTTG	alt_6029_new	13	14	22	10	21	10	24	13	17	12
TATACAATACTTGTTT	alt_6029_new	0	0	0	0	0	0	0	0	0	0
TAATTGGGAGTGAGGC	alt_6029_new	8	6	6	2	9	8	5	8	11	3
CCTTGTTGAAGGACGT	alt_6029_new	4	9	7	1	6	7	9	4	6	3
CTCGAACCGGATGTTA	alt_6029_new	0	0	0	0	0	0	0	0	0	0
ATTCGCAGTGGGGCCT	alt_6029_new	8	12	2	4	8	5	6	7	2	6
TATTCTGACACTTACC	alt_6029_new	0	0	0	0	0	0	0	0	0	0
CAGGCGTATAAGGTCG	alt_6029_new	0	0	0	0	0	0	0	0	0	0
GTTTCCGTAGACAATC	alt_6029_new	85	178	121	107	152	77	195	95	174	91
CTTTAACGCAGACAGA	alt_6029_new	46	68	59	61	70	47	98	43	87	40
CCATACTACCGTTAGT	alt_6029_new	6	21	12	8	21	11	18	11	15	8
TTTTGACCTTGTTGTA	alt_6029_new	8	20	13	10	17	7	32	18	19	4
CTTCTGAGTGGCCGGA	alt_6029_new	53	76	61	42	76	46	76	51	87	43
GCCATTTGGTTGAGCC	alt_6029_new	75	143	112	88	160	73	171	98	164	83
TACTAGCACTTTGCAT	alt_6029_new	18	35	39	27	45	15	41	31	38	28
AGTGCAACCAGGATAA	alt_6029_new	0	0	0	0	0	0	0	0	0	0
TTACGATACCATACAG	alt_6029_new	0	0	0	0	0	0	0	0	0	0
GCTTGTATCTGTCGGT	alt_6029_new	0	0	0	0	0	0	0	0	0	0
GGGGATAGGGGGATCT	alt_6029_new	36	52	28	32	36	34	51	30	48	31
GTGAATTGGCCTTGGG	alt_6029_new	2	1	2	1	2	1	5	2	1	2
ACGAAAGCTTGCTGCA	alt_6029_new	86	165	126	109	161	99	175	90	144	97
TTCTGATGGCAGTCTC	alt_6029_new	0	0	0	0	0	0	0	0	0	0
GCAAGAGAAGAGAGCC	alt_6029_new	24	23	36	21	43	15	55	14	49	26
CGCCAGTCCCTTTCTA	alt_6029_new	1	11	6	1	15	5	14	3	8	3
TGTGGTCTCCAGGCTC	alt_6029_new	0	0	0	0	0	0	0	0	0	0
CGTTACATCTGAATGT	alt_6029_new	61	87	71	58	122	53	101	60	97	61
CACTCTCGGGAGCCGC	alt_6123_new	34	47	31	35	45	26	49	19	68	34
TATTCTCATGGCGCAG	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GGAACCCCAGCATTTG	alt_6123_new	3	7	8	3	2	4	8	8	7	4
TTTCATAGGCGCTATT	alt_6123_new	120	127	156	154	117	119	122	117	137	110
GAAAAGGTTCGGCATA	alt_6123_new	56	61	75	63	45	61	51	55	60	37
AACCAGGCCTTCTACG	alt_6123_new	43	34	48	48	40	38	33	38	31	29
CCGTTTTAGCGCTTTG	alt_6123_new	7	3	6	7	4	9	7	2	7	3
ACGGTCGTTTCTACCG	alt_6123_new	68	58	72	65	52	64	60	69	67	74
TTGGTTGAGGTATTAA	alt_6123_new	38	35	38	35	31	33	43	35	42	30
CGATCTCAGGCGCCTG	alt_6123_new	95	79	127	90	93	84	91	71	75	78
GGCTTACTGCCCTATA	alt_6123_new	282	260	389	334	273	275	295	301	302	277
TTTGACTCTGTCGCGA	alt_6123_new	29	8	21	21	20	21	13	27	15	15
GACGATGCTGACTACT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CGGCGACACCTGCGCA	alt_6123_new	0	0	0	0	0	0	0	0	0	0
ATTCGGAGGGAATCGT	alt_6123_new	47	29	78	52	37	57	56	57	40	49
ATGATAGATAGCCATC	alt_6123_new	376	355	416	388	324	317	350	360	405	310
GGCTGCTACGTATCTT	alt_6123_new	25	29	36	21	16	24	24	26	19	21
CCTTATGTGAAGTTGT	alt_6123_new	42	29	43	30	39	43	27	28	38	22
TTCGCCAGAATTCGTC	alt_6123_new	126	123	196	172	126	153	129	152	146	136
TGTTCTTTAAAGGGTG	alt_6123_new	16	21	33	15	19	31	18	17	18	13
GCACATCATAGCCCCA	alt_6123_new	3	4	8	11	5	6	5	4	6	4
GTATATTGCTACACCG	alt_6123_new	3	2	2	7	3	1	2	1	1	4
TTGATTGTTGGTTATG	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CAACATCTAGAACAGT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TACTCCGGCATCGTGG	alt_6123_new	58	68	73	58	57	66	64	72	72	57
TTTGAGTGTTAGTGCA	alt_6123_new	100	127	126	105	91	110	122	91	101	90
GAGTTTTACACGTTCG	alt_6123_new	12	14	11	14	5	10	11	6	4	6
CAGGTCCTCATTATTC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GGTATAGTCGTGCTGT	alt_6123_new	18	15	35	17	26	23	17	22	19	27
TAACTTTAAGCATCGT	alt_6123_new	4	5	4	0	2	3	1	0	5	3
TTATACACGCTGCACT	alt_6123_new	24	25	22	15	21	10	20	12	14	18
TATTACCGTTACATTG	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GCCCCTACTAAGCACT	alt_6123_new	11	9	16	8	7	8	9	13	11	10
GCATCACTAACCCACA	alt_6123_new	3	4	5	7	3	3	4	4	2	3
AGGTTACATTATAATT	alt_6123_new	32	39	64	38	43	55	33	39	45	33
GTCCCCTCCTGTGGCT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
ACCTTATTATAGCCGT	alt_6123_new	70	57	55	59	53	43	60	53	56	38
CGCCCTGCCTATAACG	alt_6123_new	0	0	0	0	0	0	0	0	0	0
AAACGGGCGAATGAGC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GCATTTCACCAAGCAG	alt_6123_new	101	57	109	90	62	74	78	71	71	75
ATTTCCCTTCGTGGGT	alt_6123_new	3	7	2	5	1	3	3	6	3	4
AGGCTACGTCCATGCG	alt_6123_new	54	11	39	28	33	36	32	45	30	20
TTTCTCATATATGTTT	alt_6123_new	50	57	66	58	41	52	55	42	44	51
CACGAGCGTGGCGGGG	alt_6123_new	67	41	83	63	52	60	42	65	45	60
CTTAGTCTCGAAATAT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TAAATTTCTGCTGCTC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
AATTATGTTGGGCTCC	alt_6123_new	2	1	2	3	4	1	2	1	7	1
AGCTTGTCTCGGTTGT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TTTACGCGATTTGACT	alt_6123_new	9	2	8	11	5	6	7	4	6	9
AAGTTTTCCCTACTAA	alt_6123_new	9	14	13	15	17	14	21	9	20	16
CCGTGTGAACGGTTCT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TGCTGCGATTACTACT	alt_6123_new	43	42	42	47	59	46	34	45	40	26
GTGGCAGCTAGGAGCC	alt_6123_new	29	20	26	30	21	21	18	15	19	18
GGGTAGCTGTTTCATT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TTCAACTCTTATGGGC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GCTCCATGAGGGCTAG	alt_6123_new	72	54	95	59	46	65	73	75	61	60
CCCACGATTTACAAGG	alt_6123_new	43	34	48	32	29	34	32	58	29	46
ACATGGCGGCTTTTAT	alt_6123_new	43	30	74	40	25	43	37	35	24	37
AGGTGACCTCTGCCAG	alt_6123_new	27	15	23	25	31	28	20	40	28	20
TCGAATCCGGGTCCCT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CCTCTGTATACGGGCC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CAATCGTGTTGTGTGT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TACAACGTCAATATTA	alt_6123_new	52	52	57	57	57	43	49	48	61	36
TGATAGTAGTTCAGGC	alt_6123_new	36	35	52	41	32	35	48	41	42	38
CCCGGGTCGCGTCTGA	alt_6123_new	57	57	91	62	65	64	37	68	62	62
CGGGTCTGCTCATAAA	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CCGTTGTCTGACTTTT	alt_6123_new	63	30	70	39	33	40	31	58	36	54
ATGTTGTTCGTGTCAG	alt_6123_new	41	32	49	29	33	34	29	44	53	41
AACCAAAATCAATGTA	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TTACCGTTGGCACTAA	alt_6123_new	24	20	30	24	18	13	16	16	18	19
GCATGTGCTGTTATCA	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GAAATCAAGTCTGGTC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CGTTACTCTAATCAAA	alt_6123_new	30	9	30	17	25	30	19	30	18	22
TCTACTCTTCTGCAAG	alt_6123_new	40	34	33	37	29	38	35	23	37	30
TGCGAACATCACAATC	alt_6123_new	86	43	83	59	65	89	61	68	50	75
TTCGGCTTCAAGTGGT	alt_6123_new	63	54	84	69	53	70	63	52	64	54
ATAACGTTAGGTTGTT	alt_6123_new	52	54	88	77	43	61	56	41	55	62
GATCCCGCCAGTAACT	alt_6123_new	103	86	114	101	72	96	84	101	71	62
TATCGGAAATCCCGCC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CTATTCGAGTCATTTG	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GTCTGCGGTAGCTTCT	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CGGGCGTCACATGTAC	alt_6123_new	7	8	13	8	5	11	5	12	9	6
CACAGTATCCTACTCA	alt_6123_new	17	32	23	23	37	24	34	27	27	14
GACATGTTGGGCACGC	alt_6123_new	14	13	21	9	16	12	10	9	15	18
CCACTCAGATTTGCAT	alt_6123_new	103	126	124	91	131	83	108	105	129	96
TCCCCGAACGGTGCAT	alt_6123_new	22	25	30	21	29	18	56	15	42	14
TGCCTGATGGATGGTG	alt_6123_new	7	4	1	7	2	5	3	5	4	3
CTTGTGTAAAGCGACG	alt_6123_new	30	37	57	52	41	39	42	36	42	35
TCAAAGGCACCAACCG	alt_6123_new	98	77	101	97	95	94	85	86	77	71
TGAGGACGTTCAGCGA	alt_6123_new	21	22	30	28	20	30	23	21	19	21
CGTCTCGGTCAAAGAT	alt_6123_new	62	96	71	59	55	60	82	61	62	45
CTAGCAAGAAACTGCC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CAATCTCGCCTGGTTT	alt_6123_new	17	23	27	21	17	20	15	32	24	19
TCGAGACCTCTAATGT	alt_6123_new	0	6	9	13	8	7	13	12	10	9
GAGACCTTCTCAGAGG	alt_6123_new	0	0	0	0	0	0	0	0	0	0
CTTTTGCGGGCCAGAT	alt_6123_new	41	26	38	24	20	19	19	24	26	30
CGTCATCTGCCTTCAA	alt_6123_new	1	0	0	0	0	0	0	0	0	0
CTTCGTTAGTGATTCA	alt_6123_new	2	0	0	1	0	0	0	1	0	1
CGCTATTGGTCATTGA	alt_6123_new	19	16	16	18	15	12	20	20	21	8
CGCATCCTCAGCTCGT	alt_6123_new	2	12	5	10	3	5	9	7	8	4
GTACGTGCTGGTGGTT	alt_6123_new	49	28	50	36	37	35	27	44	38	35
TCCACATTTGATTTTT	alt_6123_new	3	4	9	6	5	5	5	4	5	6
AGCCCTTGGATGAAAA	alt_6123_new	0	0	0	0	0	0	0	0	0	0
GTAATGAATAGAAAAA	alt_6123_new	46	41	59	43	39	32	42	55	42	47
TATCACATGTGACTAT	alt_6123_new	56	42	77	56	64	48	61	62	61	40
GGCATGTAGAACTTGT	alt_6123_new	6	7	18	11	9	5	10	6	9	11
CACCTTTTGAGCACCT	alt_6123_new	2	3	4	5	3	2	5	1	3	3
TGTGGGGAATTCGTGT	alt_6123_new	140	110	155	135	111	122	127	95	102	98
AAACTAAGGTCCTCCG	alt_6123_new	44	45	64	38	40	51	58	49	50	49
CAGGATAACTTCTATC	alt_6123_new	57	87	113	95	99	66	101	78	90	61
TGGATTGTCTCGAATG	alt_6123_new	4	1	4	1	0	5	1	3	2	5
ACTTTGTTTTTGATTG	alt_6123_new	47	27	50	55	26	41	36	43	23	34
ATGTGGCTCTCATGAG	alt_6123_new	42	33	50	40	35	40	38	36	28	38
GCATAAGAGTAAGGTT	alt_6123_new	38	39	41	30	27	32	27	26	40	36
CGTGGTCACGTCCAGA	alt_6123_new	55	25	42	26	23	23	29	20	30	22
CGGCCCGCTCTCTAGT	alt_6123_new	7	4	5	4	5	4	4	5	4	6
TGCTGGTTTATACATC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
ATCTTCCAAACTCGTG	alt_6123_new	45	29	51	44	34	40	40	43	46	37
AATGGGCTTGTCTCAC	alt_6123_new	47	28	46	51	52	65	44	59	32	50
CTGGGGATAGTTCCTT	alt_6123_new	27	30	28	35	27	22	21	15	23	22
TTATGGATCGTAGACT	alt_6123_new	56	47	83	48	70	45	64	53	55	49
GGTTAACAATACACGC	alt_6123_new	0	0	0	0	0	0	0	0	0	0
TAAAGGCCGCACTGAG	alt_6123_new	21	28	29	23	31	26	27	23	25	24
CAGCTAGATGTGCTCA	alt_6123_new	17	14	25	23	18	18	18	16	10	8
CAACGCCTTACTAATG	alt_6123_new	15	15	29	18	21	16	13	27	11	14
TTGGGTACATATTCTT	alt_6123_new	22	16	28	24	10	22	6	19	20	19
TCCTTCTATGTTCCTG	alt_6123_new	0	0	0	0	0	0	0	0	0	0
AAATTGCATGCGAATA	alt_5720_new	0	0	0	0	0	0	0	0	0	0
GTGGTACCTCTACAGT	alt_5720_new	0	0	0	0	0	0	0	0	0	0
GCGCAATTATGTCAAA	alt_5720_new	33	39	41	41	53	29	32	29	25	21
TGGTTCGGGGGCATCT	alt_5720_new	90	105	88	63	109	70	91	60	111	60
GCAATTGCGTGGGCCT	alt_5720_new	0	0	0	0	0	0	0	0	0	0
CCTTATAAAAAATCTG	alt_5720_new	4	8	11	6	7	6	12	9	12	12
GAGGAGGTGGTCATCG	alt_5720_new	88	109	71	91	59	74	94	65	103	72
TGTTTTTGAGATCTTC	alt_5720_new	26	32	34	29	33	11	27	10	22	12
CCCCCCCCTGTACATA	alt_5720_new	0	0	0	0	0	0	0	0	0	0
AACTAATAGGCATTGA	alt_5720_new	0	0	0	0	0	0	0	0	0	0
CTTTGAGCTCGCATAT	alt_5720_new	3	1	5	1	2	2	5	1	4	2
TGATCAGCTGCGAGGT	alt_5720_new	46	68	47	50	89	65	66	49	60	46
TGCAAGCACGGCCCGT	alt_5720_new	0	0	0	0	0	0	0	0	0	0
GTCTTTGAAGTCCGAT	alt_5720_new	61	93	77	44	78	67	111	42	99	62
TTTTACCCACTATGAG	alt_5720_new	0	0	0	0	0	0	0	0	0	0
GTAACAGAGGTCTCTT	alt_5720_new	35	58	36	41	33	32	48	39	37	34
CCTCGGCCTGTGTAAT	alt_5720_new	50	55	48	35	60	51	66	45	60	24
CCCCCCCTGTACATAG	alt_5720_new	41	50	58	46	53	55	54	40	58	46
AGCGGACCGCCAGTAA	alt_5720_new	16	52	37	18	28	23	41	27	55	21
AGTGACTTTACTGGGT	alt_5720_new	0	0	0	0	0	0	0	0	0	0
AACACTTCTGCACCTC	alt_5720_new	68	77	76	67	70	57	77	56	88	75
TTCTCGTTGACGCCTC	alt_5720_new	0	0	0	0	0	0	0	0	0	0
TATAGGAGCGGTGGAC	alt_5720_new	0	0	0	0	0	0	0	0	0	0
GTATGACGTTTGGTAC	alt_5720_new	68	76	86	51	84	68	74	49	95	65
TTTCTTCAGTAATGCG	alt_5720_new	0	0	0	0	0	0	0	0	0	0
TCTAGTGTCACCGCAT	alt_5720_new	39	40	31	41	39	49	59	37	54	34
GCCTCCGATAGCTGTA	alt_5720_new	33	41	39	19	40	22	38	15	43	19
GCGTACCAGTCGCCCA	alt_5720_new	38	36	42	24	42	24	42	26	51	29
TAAAACGTCTTTCCTA	alt_5720_new	5	11	9	3	10	7	4	7	15	3
CCCCGCCAAGTCCTAG	ref_5720_new	174	227	182	192	227	163	226	147	237	155
CAGTCCGTATGTACCC	alt_5720_new	43	67	51	47	59	42	69	47	71	35
TTTTATAATCCCTAGG	alt_5720_new	2	3	2	4	3	1	1	4	2	3
TTAGGGCGCATGGCTC	alt_5720_new	0	0	0	0	0	0	0	0	0	0
CGCATAGTCTTCGTAT	ref_5720_new	8	8	8	7	6	2	11	5	4	8
CGTCATTTCCTAGGCA	alt_5720_new	9	8	18	14	12	15	16	13	12	6
TGCATATGTCCGTATC	alt_5720_new	28	34	46	31	48	39	55	40	65	37
TGTCAGACGAACGGGC	alt_5720_new	21	26	25	16	23	16	23	20	25	8
GTATTATAGCGCCCTT	alt_5720_new	0	0	0	0	0	0	0	0	0	0
TCAACGCTTAATTGTG	alt_5720_new	25	57	48	32	56	32	64	35	70	42
GAGCACACCCGAGAAG	alt_5720_new	3	7	4	6	4	6	6	8	6	5
AAGCGTGGTCCACATT	alt_5720_new	192	229	225	204	220	191	224	173	252	203
CCCCCCTGTACATAGC	alt_5720_new	0	0	0	0	0	0	0	0	0	0
GCTTGAGTCATGATCG	alt_5720_new	11	20	9	7	9	15	18	12	20	9
CACGGTTAGGCCGGTT	alt_5720_new	49	88	66	67	91	49	92	51	100	55
GTTAAATTTCTTTCCG	alt_5720_new	89	104	82	80	104	82	85	61	102	71
TTGGGCGACCTATAGA	alt_5720_new	13	16	7	6	12	10	20	15	20	15
ATATTGCATGCGAATA	alt_5720_new	104	179	178	145	183	122	194	117	210	119
GGAAGCTGGTGACCCT	alt_5720_new	35	26	42	28	36	20	28	28	36	20
CAAACTGTTTCAGGTC	alt_5720_new	7	10	9	6	16	8	18	14	14	7
TCTTGGGAAGTCCTTA	alt_5720_new	17	27	22	22	16	15	34	19	15	19
GATATTGTATATCTAC	alt_5720_new	6	17	10	4	7	7	10	2	6	7
ACAGATCATGTGTAGT	alt_5720_new	0	0	0	0	0	0	0	0	0	0
ATTTGAGATCACGCTG	alt_5720_new	17	13	24	15	14	18	14	12	16	12
GCTTTCTCGTTGGTTC	alt_5720_new	42	42	46	38	47	34	60	42	56	31
GGGGCCCGTCCACTAA	alt_5720_new	17	43	40	24	40	24	32	21	31	29
GGGATCTTTCTTGGTT	alt_5720_new	1	1	11	5	4	6	7	1	6	4
CCTTTTATCTTTGTAG	alt_5720_new	30	56	21	32	42	20	49	28	60	18
CGCTACGTATTATACA	alt_5720_new	18	23	15	15	17	11	21	20	17	23
TTTTGAAGGTCCTGTT	alt_5720_new	5	11	25	14	9	9	16	13	16	7
TGGATTGAGCTGTTCT	alt_5720_new	41	47	41	39	47	39	66	25	46	35
ATCGCAGAAGATTCGA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GCCATCAAATTTTAAG	alt_6031_new	0	0	0	0	0	1	1	0	1	1
GAACGCATTCTGCGGA	alt_6031_new	38	47	66	25	60	50	70	25	76	35
GTATCTATTTACCTCT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CTCAGCCTTGATCTTC	alt_6031_new	0	0	0	0	0	0	0	0	0	0
TCGTACATTCGGTATG	alt_6031_new	4	9	6	7	14	4	18	6	8	4
CAAGGGCTGAAGTTTG	alt_6031_new	52	59	44	41	77	31	72	42	92	32
GATTCGTCTTTGGACA	alt_6031_new	21	48	23	27	29	23	57	20	50	17
GGGTTCTAGAATCAGT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CAGGTTTTTGTTTGTG	alt_6031_new	3	2	1	3	2	0	0	0	4	0
ATTACTTTCTGCGTAC	alt_6031_new	35	84	55	40	98	38	79	42	85	36
TACTGTTGGTCGTTAC	alt_6031_new	54	109	60	68	134	75	120	49	110	53
GCCTTAGGGACGATTA	alt_6031_new	41	56	40	47	83	29	83	44	86	39
CTGATCTTTTACCTCA	alt_6031_new	53	68	49	36	82	45	79	46	81	43
CGGTCACGTGAATAAG	alt_6031_new	55	123	84	55	100	76	105	65	127	56
TGGATGATAGAAACTG	alt_6031_new	14	36	23	19	21	14	27	16	36	16
TTGTCTTCGACGTAGG	alt_6031_new	24	42	23	28	48	15	55	32	53	23
TAGTTCGAACTGTATA	alt_6031_new	91	95	95	85	129	78	142	82	145	66
ACTGCCCTAACTGATG	alt_6031_new	25	46	30	24	57	32	59	25	55	24
AACTTTTAGAGTAACG	alt_6031_new	27	53	46	30	49	34	63	35	60	23
GAGTTGTTTGTAGTTG	alt_6031_new	105	159	118	110	185	83	195	84	207	65
ATTTGTTTTTTCCTAG	alt_6031_new	11	27	10	10	31	7	18	9	19	12
CATTTGAATTTGCGTG	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CTTAAGATGGGTGACT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GGCACATTTACGGAAG	alt_6031_new	16	36	21	25	34	24	45	8	28	24
TCTTGAGGTCACAGTT	alt_6031_new	8	22	15	10	22	11	31	15	30	17
TCCTAGAATACTTCGG	alt_6031_new	3	2	0	5	1	1	1	1	3	1
TGCAAGCATTCCCCGG	alt_6031_new	12	38	15	9	30	10	33	7	31	16
GTTTACAGGTGTTTAC	alt_6031_new	3	10	5	4	11	9	18	6	6	2
TCAGAGTTGATTTGTT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
ATAACTCTGGACCATG	alt_6031_new	0	0	0	0	0	0	0	0	0	0
TATCACGCATTTCCGT	alt_6031_new	29	59	50	22	57	24	49	31	53	27
GGTCGCTTTTCTTTGA	alt_6031_new	62	77	78	69	81	58	81	59	101	55
CGCAATTCATTCCATT	alt_6031_new	3	16	5	7	8	1	16	1	4	2
ATACCGTAGATGTTAA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
TTTTTCCGTACTCACG	alt_6031_new	26	84	48	32	75	37	86	27	87	33
CAGCAATCCCTATTAG	alt_6031_new	101	206	108	106	198	92	215	100	214	80
GTAAACTGAGGAACTA	alt_6031_new	19	37	26	22	33	23	35	21	29	20
GTACAGATATTTTTCC	alt_6031_new	0	0	0	0	0	0	0	0	0	0
ACATAACTTTAGGTAC	alt_6031_new	197	360	227	217	344	191	342	206	365	156
TTCGATTCGGAGGCCG	alt_6031_new	56	54	42	43	87	44	74	40	67	43
AGTTTCGAACGTTTAT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GGGTGCCGACGTTAAA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
ATTTAAGTGCATACCC	alt_6031_new	14	45	36	24	45	17	38	26	66	24
GCCTTAATCTGGAATA	alt_6031_new	7	19	18	20	37	13	29	9	26	11
TTAACGTCATACAGAA	alt_6031_new	4	9	2	2	10	4	9	6	5	9
GTCGTCTTCTGATCCA	alt_6031_new	24	20	24	17	21	16	44	28	31	16
CGCTCCTCTGCATCAC	alt_6031_new	7	10	16	10	14	10	9	4	12	12
GTCGGGCTAGATGGCG	alt_6031_new	37	72	31	29	66	39	81	30	59	31
CTGTTCTCATGAAAAT	alt_6031_new	6	9	4	3	20	8	10	8	18	12
TCATTGCACAGTACTG	alt_6031_new	8	22	19	11	20	13	23	11	24	6
AACTTGCAAACGGTGG	alt_6031_new	0	0	0	0	0	0	0	0	0	0
AGGCCCAACTTATGCT	alt_6031_new	11	15	17	6	18	12	12	9	22	7
TTCGGTTCCAGGCCGC	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GCGGCTTCGACCGTAA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
TTCACATATTCCTGGT	alt_6031_new	16	39	14	18	37	16	33	25	32	18
GGTAGGTTTTCGGTAT	alt_6031_new	6	10	11	8	11	7	9	4	12	6
GCGTGGATCATGCAAT	alt_6031_new	26	48	39	41	62	24	48	34	55	31
CAGGGTATGCCCCATG	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CGGTTATGTATCAAGT	alt_6031_new	36	39	44	18	42	16	43	21	38	21
AGACTATTTGACTTGG	alt_6031_new	3	11	2	5	15	3	5	0	6	1
AAATCTCTGTGCGAAT	alt_6031_new	4	8	8	3	16	5	11	6	12	3
CCTGATGGACCTATGG	alt_6031_new	1	6	3	0	7	2	2	0	11	1
AGCGAGGTTAACTATT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GTTCAGTTGGTTTTTT	alt_6031_new	3	5	1	3	2	1	3	0	5	0
TAGCTTACTGGGCTCC	alt_6031_new	19	19	12	20	31	13	33	14	18	12
ATGTTCGTACAAAGTG	alt_6031_new	8	28	14	4	14	15	18	6	22	13
GCGTGACCCCGGATTC	alt_6031_new	0	0	0	0	0	0	0	0	0	0
ATGTTGTTTGGTGTCC	alt_6031_new	31	65	38	37	61	27	52	33	61	29
TCGGGTGGCATCCGTA	alt_6031_new	124	210	165	120	240	152	238	141	241	138
GTTCGATTTCGACCTA	alt_6031_new	1	8	1	2	11	3	8	2	3	0
CCCGTAGCTTCGGGCT	alt_6031_new	3	11	1	4	7	3	7	5	8	3
CATCTGGAGTCACGCA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CGTAATCGATCCTTGG	alt_6031_new	3	7	6	10	10	2	9	8	5	5
GAGTCCTAATTTGGCG	alt_6031_new	1	7	5	3	6	3	13	1	5	1
TGCTAGCCTTTGAGTC	alt_6031_new	8	10	8	5	12	5	12	7	14	9
TTCTGAATTAGGTCCC	alt_6031_new	32	66	26	29	57	34	76	25	54	16
GTAGGTCACTTACTTA	alt_6031_new	16	26	22	8	35	9	28	15	32	16
TCCATTTGAATGTCGC	alt_6031_new	62	85	96	59	108	58	110	79	113	61
GAATGTTCTACCATAC	alt_6031_new	16	24	10	16	33	11	25	7	28	7
TTTCTAGGCTTACGTG	alt_6031_new	18	35	21	18	24	17	28	14	24	14
AGATCGCAGGTTATAT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GTATGGATAGTACTCA	alt_6031_new	31	38	24	22	40	29	47	27	68	24
TGGTCCAATATATCAA	alt_6031_new	2	7	5	0	5	1	2	3	10	0
CTCCTTTAACGCTCTC	alt_6031_new	39	66	63	47	66	39	76	36	66	24
TCTAGACCTCTTCAGA	alt_6031_new	9	19	13	20	28	6	22	13	27	10
TTGACCACTGAGGTAT	alt_6031_new	26	51	37	21	39	26	64	21	54	25
ACTTGTGCTGCATGTG	alt_6031_new	26	53	32	28	63	15	85	26	72	20
ATTCTATGTGATATGT	alt_6031_new	22	57	31	24	48	29	48	26	50	23
CTCTCATAAAGATCTT	alt_6031_new	15	15	12	17	17	8	23	19	25	17
CTGTTAATTGTGAAAC	alt_6031_new	0	0	0	0	0	0	0	0	0	0
TGTGGCAGGACCTACA	alt_6031_new	34	119	61	42	110	47	117	43	119	49
AGTTATGTACTTCTCG	alt_6031_new	7	11	3	5	5	3	3	3	7	7
GTTCAAATTATCTAAG	alt_6031_new	13	32	13	10	38	14	34	22	28	13
ACTTATATTTAGCCTT	alt_6031_new	21	38	28	18	44	25	43	22	56	19
ATACACGGGATACGGT	alt_6031_new	10	23	18	13	15	11	25	15	22	12
TGTACACGTAGCGATA	alt_6031_new	12	47	23	23	50	16	42	12	25	20
TACAGCAGACATGGTG	alt_6031_new	37	73	52	35	51	51	59	42	91	26
GATGCACAGTTCCCGA	alt_6031_new	67	196	99	92	171	78	191	76	192	78
ACACATAGCCTTGTAG	alt_6031_new	57	129	75	71	136	55	89	43	126	54
AGATGCAGGCCGCCTA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CATCTGGAGTCCCGCA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GGTGGATGTATGATAG	alt_6031_new	7	20	15	13	19	10	20	15	21	8
TATGTTGCACTCAATC	alt_6031_new	0	0	0	0	0	0	0	0	0	0
AGGCGGCTTTACTCAC	alt_6031_new	5	18	3	3	18	6	23	10	14	4
GAAACTCCTAATCTGG	alt_6031_new	28	40	25	25	40	26	49	30	49	20
TAAGAACGGCGTGTAC	alt_6031_new	19	54	33	21	41	15	45	18	42	19
CTGCTCGCCATCATGC	alt_6031_new	4	10	7	6	10	5	9	6	15	5
AAATGATTCGTAGTTT	alt_6031_new	38	53	41	39	51	49	60	28	66	35
GCAGTGTATAGCGTTG	alt_6031_new	5	14	10	9	14	9	15	6	11	5
CTGTGATTTGTGGATT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
AAGTGATGTATGTGTT	alt_6031_new	3	6	3	5	6	8	8	10	7	8
CGTCGCGTAGCTTAAA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CCAATTAGGACGTCTC	alt_6031_new	6	13	21	10	25	5	21	8	17	8
TGTTTAGTCAATACGG	alt_6031_new	15	31	21	19	31	13	28	23	31	16
TCAACCCAATTCGGGA	alt_6031_new	0	0	0	0	0	0	0	0	0	0
TCTGGTGAGTCAGATC	alt_6031_new	2	5	3	1	5	1	5	3	3	1
TGCTTACGTACGGCTT	alt_6031_new	0	0	0	0	0	0	0	0	0	0
CATGGTCATTCTGCGG	alt_6031_new	0	0	0	0	0	0	0	0	0	0
GTGTCCCATATTTCTT	alt_6031_new	41	65	55	41	71	36	44	32	57	34
ATCTACTAGCTGAAAG	alt_2817_fdr	30	20	29	19	21	12	11	23	15	13
CTAGCTAGCTTACTTT	alt_2817_fdr	1	1	4	6	3	3	5	6	6	3
GTCAAACCCCCCGGTT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
ATAATAAATAAGACAA	alt_2817_fdr	52	19	45	49	37	40	33	50	34	50
TTGTCGAATTAGAATG	alt_2817_fdr	156	114	187	146	93	148	106	123	139	119
CCGGGGCTTCATTTTT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTTCGTCCGAGCA	alt_2817_fdr	57	46	71	70	60	63	62	73	76	56
ATTTTGTTGTCAGGGG	alt_2817_fdr	104	81	117	81	64	104	71	107	77	77
TCCGGACTCTCTTTGT	alt_2817_fdr	71	30	70	75	34	72	30	69	33	60
TGGTCATATCCGGTTG	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CACTGGAGTCTTCGAC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TGCAACATTTATTAGT	alt_2817_fdr	70	44	81	86	50	73	51	68	57	80
TTTCATCTAAGATTAT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTCTCCTTGCTTG	alt_2817_fdr	3	20	11	4	24	4	32	2	27	4
TTACATTTTTACCCCG	alt_2817_fdr	1	2	3	1	1	1	0	2	3	0
GGCGCGCTCATTGTGC	alt_2817_fdr	80	42	100	72	80	81	65	76	57	80
AAGTACCGCACTTGTG	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCGAAGATGTTTT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTATTCCTGGGCAACA	alt_2817_fdr	21	17	22	18	14	21	17	23	15	23
TAAAGGAATCGGAGGT	alt_2817_fdr	52	41	78	87	35	74	44	53	43	58
TATGGACGGATGCTGT	alt_2817_fdr	115	83	152	130	80	123	72	108	116	103
ATGTAAGAGGAAGCCT	alt_2817_fdr	19	16	23	37	18	21	19	29	24	17
ATCCACATGTGGGCGT	alt_2817_fdr	384	274	450	405	278	383	259	343	297	369
GTTATCGGGATCCGGC	alt_2817_fdr	80	44	79	74	56	82	36	86	82	67
TTGCAGACCGACATTT	alt_2817_fdr	77	60	91	91	38	101	42	89	55	67
GGGTGAGAATTATCGC	alt_2817_fdr	25	26	29	26	24	25	17	25	32	29
TTTAGGCATACGTGTA	alt_2817_fdr	84	76	96	90	66	79	60	83	83	80
CAGTTCATACCGAGGC	alt_2817_fdr	16	10	18	20	15	20	13	17	11	17
TAATTTCACAGGGGCG	alt_2817_fdr	28	14	23	26	15	23	16	16	15	21
GTTCACCAACTTCCAA	alt_2817_fdr	31	16	26	39	13	10	22	28	35	25
ATTGGCTCTAATCAGG	alt_2817_fdr	5	11	6	9	4	10	4	3	3	9
GTACTTTAGGTAAGAT	alt_2817_fdr	17	11	26	29	10	17	14	13	18	14
TTGTTGCGCCGCCTAC	alt_2817_fdr	12	7	14	20	3	11	5	13	15	6
TTACGTCCTTCGACAG	alt_2817_fdr	10	12	11	14	15	14	3	11	7	7
GTTGCGTGTTCGTGTG	alt_2817_fdr	34	7	36	27	23	24	29	33	25	32
CCACAGTATAGAAGTA	alt_2817_fdr	190	132	211	197	127	189	129	174	150	141
GTTAATTAACGTATTA	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CATAAGCACATCATAT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
AGACGAGTGAATGTTC	alt_2817_fdr	39	27	38	43	23	26	30	30	29	35
ATAGTTACGTTCTTAG	alt_2817_fdr	28	26	49	42	29	31	29	28	28	31
ACATTGACAGAGTTTC	alt_2817_fdr	18	14	25	20	15	11	18	12	17	16
GGATTATAAATATTGG	alt_2817_fdr	353	228	447	369	235	349	264	341	233	302
TTGCGAATTTGTCCTG	alt_2817_fdr	120	82	138	140	58	119	94	120	86	121
CTCCCCATACCGTTAG	alt_2817_fdr	14	43	15	10	47	11	49	16	59	10
TTTGATCGTTCTCATG	alt_2817_fdr	62	36	64	71	56	65	39	47	58	49
AAATATCTGCTTTTCG	alt_2817_fdr	31	12	27	32	13	20	21	18	19	22
CCCTTCCGGTGGGTTA	alt_2817_fdr	34	20	60	30	25	20	22	35	25	28
GTGTCCTATGGTACTA	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TATTTGGTATGACTGA	alt_2817_fdr	27	15	64	31	24	37	33	29	20	31
GATTGGTAGACCCTTG	alt_2817_fdr	19	7	29	38	14	15	16	20	19	17
AGGGGCAAATTATTCA	alt_2817_fdr	4	1	10	7	2	7	1	5	6	3
TCGGGCTCAGTTCGGT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGTTGGTACTGTA	alt_2817_fdr	49	46	79	77	56	70	59	37	58	49
TCTGGTAGGGTCAAGA	alt_2817_fdr	10	9	12	13	8	10	6	14	5	11
TTGTATGTTCTCTCAA	alt_2817_fdr	6	5	5	4	4	4	4	3	0	5
CACCGTCTTGCCAATT	alt_2817_fdr	54	109	67	82	103	72	120	83	132	76
TTGGTCTGATCATGGG	alt_2817_fdr	29	19	42	39	14	46	14	45	25	50
ATCACCTTCATTCGTA	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTACGTGTACTTCATC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TAATCAATGGGATTAC	alt_2817_fdr	39	13	37	34	23	24	19	27	29	26
TCAATTTTCAAAGTAA	alt_2817_fdr	29	29	29	32	30	27	30	35	24	19
AGCAACCGGCCCGGGG	alt_2817_fdr	17	10	20	3	9	11	6	7	14	13
TTAATGTCTTCTGCTT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCAACGTATTAGCACC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
ACGTGGATCACTAGGT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCGATCCCTGGTG	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCGTACGGTGTTT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAGCAGTCCATCA	alt_2817_fdr	9	5	0	6	2	3	1	3	8	3
CATACCGTAGTTTTGC	alt_2817_fdr	3	3	2	0	4	1	0	6	0	2
ATCCGGAATTGGCGTT	alt_2817_fdr	19	21	42	23	17	25	16	18	16	27
GCTGCCCAATGTGTCA	alt_2817_fdr	74	52	82	66	57	73	50	74	69	64
CCTGTAAACTGAGTAC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCCTGATAAGTGA	alt_2817_fdr	12	14	13	14	25	4	13	12	5	14
TAGAGAGGTGGCTTCG	alt_2817_fdr	102	68	141	106	81	114	84	99	82	104
GTAATGTTTCAATTTT	alt_2817_fdr	22	19	23	30	30	26	17	24	23	23
TTTCCGCTGCGTGGGA	alt_2817_fdr	41	40	72	54	35	58	30	56	38	61
GGATGGGATCTCGGAC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TAATCACTTCACCGTG	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTTGATCTACAGGATT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CAAATGCATTACAAAA	alt_2817_fdr	22	21	31	35	24	27	26	29	19	22
CCTATATGTACGGTGG	alt_2817_fdr	27	31	40	42	30	25	47	30	55	28
TCCACCTGTCTCTTAT	alt_2817_fdr	15	15	19	14	11	20	14	14	12	13
TCGAGGTATTTCAATT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGTAGGGCCAGGT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGTCTACTTATTA	alt_2817_fdr	35	27	34	32	37	36	25	45	31	28
AATGCAGGCCTGGTAC	alt_2817_fdr	19	12	9	19	14	10	11	15	10	16
CATCCACAATGCTCGT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCCTACTGGGTTC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTGTATCCTGTGTCCC	alt_2817_fdr	21	13	21	12	17	13	12	20	11	16
CTTTTTTTGGTTCTAT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
GATAGATCTAGCCTAA	alt_2817_fdr	113	92	140	122	84	105	95	108	93	93
ATAATTTAAGTAGGGA	alt_2817_fdr	44	23	53	36	27	42	33	33	27	34
ACACAATTTCGGAGTT	alt_2817_fdr	32	25	42	31	23	49	25	47	27	37
CAACTATTGCCCTCAG	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CTAAAACGGTAAATTA	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGTTTTGCGAAG	alt_2817_fdr	13	13	14	19	7	8	13	11	12	11
AATTCACATACGTCAG	alt_2817_fdr	19	5	12	10	5	9	4	5	9	9
ATGGGCTATGGATTGC	alt_2817_fdr	82	63	109	88	48	80	64	100	56	69
GATTCCTACAAATTTA	alt_2817_fdr	41	30	73	58	28	58	31	58	35	52
AGGTATTACTGCCGCT	alt_2817_fdr	75	49	82	73	46	65	61	87	47	63
TTAATTCGAGTTTCTT	alt_2817_fdr	4	1	11	6	1	6	1	7	1	6
ACCCTCAAACGGAGCA	alt_2817_fdr	13	3	10	12	6	8	10	13	14	12
ATGGAATTAACCCCCC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGATACCGCTTT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCGGGCTTACGGT	alt_2817_fdr	20	8	19	25	7	11	10	25	16	18
TTCGTCCCATCACGAT	alt_2817_fdr	38	15	50	32	19	37	27	39	22	26
TGTAAATTCGCTCGTA	alt_2817_fdr	69	61	93	77	57	81	43	86	61	73
TTAGTAATGCATCCGT	alt_2817_fdr	28	23	30	22	16	23	17	31	24	22
TCGGGGTTTCTTTAGG	alt_2817_fdr	61	27	48	54	28	41	26	35	43	46
GCGTGTTTTTCCTCCA	alt_2817_fdr	12	5	15	11	13	12	11	15	19	13
GATTACTGACCTTATT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
GCATATCTGTTAACCA	alt_2817_fdr	173	138	264	223	148	197	133	201	160	192
AAAAACATGAGCATTC	alt_2817_fdr	57	38	110	83	40	72	40	70	49	66
CGCCCTACGCGAATCC	alt_2817_fdr	9	9	7	12	6	14	4	10	11	7
GACTAATAGCGTCTAA	alt_2817_fdr	214	150	267	235	126	199	178	214	168	168
CAGGCAGCACACTATG	alt_2817_fdr	12	12	19	15	14	19	8	15	15	9
ACTGCCTAGATGCGTC	alt_2817_fdr	20	24	30	22	26	18	11	18	20	22
CTACGGTGGGCACTCT	alt_2817_fdr	32	21	46	23	23	24	14	16	22	24
ACAGCTGAAGGGTACC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
AAAAGAGGCCTAGGTC	alt_2817_fdr	99	60	100	110	59	87	68	104	66	93
CCCCCCGCTTAGTAGC	alt_2817_fdr	3	3	4	1	4	1	3	2	7	3
TCATGCGCTTATATAA	alt_2817_fdr	28	30	41	45	33	27	32	23	34	47
GCCACCTCTTCGTGCC	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCTGCGGTATGGG	alt_2817_fdr	6	6	10	7	2	5	1	4	8	4
TAGTCCGACGGGTTTA	alt_2817_fdr	95	43	104	102	65	89	80	103	55	77
TTTGTGCATAGCTCAT	alt_2817_fdr	74	41	59	61	52	50	52	45	49	47
GTTGGACGGTCTTTTT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
TATATCATTCATTTAT	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCTGGCATACTGT	alt_2817_fdr	13	21	21	10	10	16	12	9	12	14
ACTGATGATTAACACT	alt_2817_fdr	161	130	216	211	106	188	126	161	134	172
TGTTTATATACTCCAA	alt_2817_fdr	319	208	379	379	211	307	201	300	212	332
GGGTACAGATCCAATT	alt_2817_fdr	107	62	95	98	69	80	65	106	69	78
TGACTCTGCATACCCT	alt_2817_fdr	10	2	11	12	3	4	9	12	9	6
TTGGGTCCGGCAGCAT	alt_2817_fdr	4	3	1	2	3	3	1	4	7	4
TGGAAGGAGGGTACTG	alt_2817_fdr	187	113	240	174	131	177	137	172	136	173
TTCGGTCCCCCCCCGA	alt_2817_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCATTTCTACAGG	ref_5779_new	47	105	50	62	104	37	115	62	109	41
GATTTCGTGGGTGACG	ref_5779_new	75	111	108	66	90	84	126	77	123	95
CTTGGTTACTTTGCGT	ref_5779_new	5	19	17	20	23	10	11	14	22	13
CATGATTTGGGCCTGG	ref_5779_new	14	24	10	12	21	6	13	10	24	16
TAGGTTCCGAAAGTCT	ref_5779_new	0	0	0	0	0	0	0	0	0	0
CTCCATGCAAGGTAGT	ref_5779_new	0	0	0	0	0	0	0	0	0	0
CTCAAATCCAGTTCAA	ref_5779_new	0	0	0	0	0	0	0	0	0	0
TCTTGTTGCAGGCTCC	ref_5779_new	113	143	110	111	190	97	153	123	132	94
TTACTTATACATTCGG	ref_5779_new	52	86	81	57	89	51	72	56	72	51
GGTCCAGGCACGTAAT	ref_5779_new	35	53	42	34	48	28	59	41	63	29
AACGATGCATTAGGCA	ref_5779_new	23	30	21	18	44	25	43	27	35	20
GCTAATAGTTTCATCA	ref_5779_new	7	24	13	14	18	16	25	11	23	13
CTGGTTAATAGGGTAC	ref_5779_new	12	41	17	19	33	15	35	17	41	16
TGTAGATATTTTGTCC	ref_5779_new	14	26	19	11	19	14	17	16	29	17
TCCTCCATGTCACACA	ref_5779_new	2	10	3	4	8	6	8	7	10	4
AAGTCTACTCTTGTGA	ref_5779_new	0	3	5	3	4	8	5	1	6	3
CATCTGGATTCGGATT	ref_5779_new	50	92	60	49	106	47	72	55	110	56
CATGGGTTTTAAGGTT	ref_5779_new	52	73	61	59	98	51	73	53	70	31
TACTATTTCCCGCATA	ref_5779_new	14	11	17	13	32	8	17	11	13	11
AGAACCGCTGAAGTGT	ref_5779_new	29	39	11	23	34	23	43	22	43	18
CCTGATTGTGTCTAAC	ref_5779_new	18	48	27	24	52	32	49	22	61	21
GCAACTTGGTCTAGCC	ref_5779_new	77	207	120	98	200	70	216	82	198	80
TCTGTCGCACCTTAGA	ref_5779_new	0	0	0	0	0	0	0	0	0	0
CGCTTATCTAGAAGTG	ref_5779_new	0	0	0	0	0	0	0	0	0	0
ACTATATAGTACTATT	ref_5779_new	6	12	14	10	7	8	15	4	9	8
GGCTCAATAGTAGCGT	ref_5779_new	30	50	31	40	60	31	54	25	44	37
CCAATCTGACTTGGCC	ref_5779_new	4	4	3	7	10	7	4	5	5	7
TCTGACGAATTGATAG	ref_5779_new	6	11	4	3	5	3	10	13	7	2
GAGTCGCAGCCCCCCC	ref_5779_new	56	87	68	78	79	57	79	57	101	48
CCGCGGCTATTATCTT	ref_5779_new	0	0	0	0	0	0	0	0	0	0
TCTTCGTATACCCACT	ref_5779_new	41	58	38	20	63	28	72	35	59	42
TTCGAGGGCTGCGTGG	ref_5779_new	40	45	40	39	49	34	62	32	53	34
GCTATGTGCACGCGCC	ref_5779_new	29	34	26	17	38	26	40	21	47	15
GTACCCCTGAATTGTG	ref_5779_new	0	0	0	0	0	0	0	0	0	0
TTAATCCTGGAGTCTG	ref_5779_new	23	41	35	20	61	24	34	20	29	8
TTCGCCTAGTATTTGC	ref_5779_new	41	129	86	64	154	67	130	48	131	55
CCGGTTAATGCGCCGG	ref_5779_new	30	39	36	32	44	34	59	27	54	20
GTCGGTAGTTGGTCTA	ref_5779_new	32	77	40	26	57	38	62	38	67	28
CAGGAAATGCTACAGA	ref_5779_new	0	0	0	0	0	0	0	0	0	0
CGCCTGCGTCAAGTCC	ref_5779_new	13	17	8	16	31	19	27	9	15	12
TGGTCACTAGGGATAA	ref_5779_new	27	28	33	24	36	22	43	23	61	19
TTGTTGTTATTAAGTC	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GCTCCGGATGCGTCCT	ref_5779_new	8	11	4	6	7	11	11	8	9	11
GATTTTTCGCTTTGTG	ref_5779_new	7	12	1	15	9	13	12	5	6	9
ATGATGCCCCCCGGCT	ref_5779_new	48	59	64	33	77	43	71	29	64	53
GTATCAGGTTTTTTAT	ref_5779_new	53	83	68	61	81	68	92	71	95	46
TGACGCTGTAGCTACC	ref_5779_new	106	155	99	81	151	86	169	83	166	75
TGGTGTGTGTGTTCGG	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GTATATATATCTTACT	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GACCGGCCATTTTCAG	ref_5779_new	33	142	46	30	116	30	133	28	128	29
CGTATTACGGCGGTTT	ref_5779_new	43	66	65	51	76	56	69	36	95	34
ATAGTTGCTGGTAACG	ref_5779_new	1	13	8	3	11	5	5	2	1	5
GTTAGGTTCCCGAGGC	ref_5779_new	10	28	11	5	17	7	17	10	20	9
TCTTACGCATTACGGG	ref_5779_new	16	57	28	18	62	16	86	27	58	16
GCTGATGCCGATCGCT	ref_5779_new	14	13	18	13	13	6	9	14	12	8
CCCAGGTGTCACCTCC	ref_5779_new	0	0	0	0	0	0	0	0	0	0
CGAACCACTTACGTGC	ref_5779_new	9	31	7	8	21	13	18	11	32	5
TAGGCATTATCAACGC	ref_5779_new	4	0	3	1	3	2	6	6	5	1
ACTCGTAGCGTAGGCC	ref_5779_new	0	0	0	0	0	0	0	0	0	0
TAGCACTAGCTTGTCG	ref_5779_new	6	7	7	3	12	4	2	7	6	10
CAGCCGTTATTTATCG	ref_5779_new	6	44	6	9	31	8	34	6	43	6
CATTACGAACCGTCAA	ref_5779_new	0	0	0	0	0	0	0	0	0	0
CCAATCACCTGATCAG	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GTTTAAAGTCTGAACG	ref_5779_new	3	2	2	1	0	0	0	2	1	0
CTTTCCATAGTTCTGG	ref_5779_new	20	19	13	21	24	14	22	21	27	19
TGCGTGCGCGGTCTGG	ref_5779_new	8	5	7	3	4	1	4	4	4	1
CCCCTAAGCTCTGAGT	ref_5779_new	0	0	0	0	0	0	0	0	0	0
TTCCCGATTTTTGAGT	ref_5779_new	5	20	12	13	17	7	32	15	25	9
TTCTTTTCGGAAGCGA	ref_5779_new	0	0	0	0	0	0	0	0	0	0
TTCTTGGTCACCGTCT	ref_5779_new	3	11	6	4	10	2	10	4	10	5
CCTGTACCGGGTGTTA	ref_5779_new	16	21	10	5	16	7	15	14	9	14
CCCTATACCTGTGACC	ref_5779_new	52	72	37	39	83	54	92	51	67	42
GCCTTAATTAGTTCCC	ref_5779_new	7	16	17	13	23	6	17	9	14	9
CCGGTTAATGCACCGG	ref_5779_new	4	7	10	5	8	9	15	4	10	5
GGGCCTCCCAAGGGTT	ref_5779_new	84	185	143	133	180	93	152	109	188	94
TACGGGACTTTTCGTG	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GACGCAGTTTGAGCAT	ref_5779_new	4	4	2	4	5	3	5	6	1	3
CACCCTTGCCCCTGAC	ref_5779_new	25	53	30	32	53	35	55	34	52	27
AGGCCGAGTGCCAGGT	ref_5779_new	10	15	14	5	20	8	9	3	14	10
AACCTGTGCGCTGTTA	ref_5779_new	5	9	7	9	10	5	6	7	4	3
TTCTTTCTATCGTCGT	ref_5779_new	37	35	42	33	55	24	48	21	33	35
CCTGGCTGAGAACGCT	ref_5779_new	0	0	0	0	0	0	0	0	0	0
TTCGTCCTACTTATTG	ref_5779_new	1	0	0	1	2	0	5	1	1	0
GTCTCGATGTACGCTG	ref_5779_new	142	184	133	119	172	118	184	113	226	100
GGTCTCCTTTTTTGCT	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GCCAGCAGGTTGTTAC	ref_5779_new	0	6	4	6	7	2	5	5	11	2
GTAATCTATCCTCGTA	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GTGTAGGTCCGGGACC	ref_5779_new	1	3	1	0	4	3	1	0	0	1
GTCGGGTTACTCAGAA	ref_5779_new	61	129	63	55	114	52	119	51	125	58
TTTTCTTTAATAGCGC	ref_5779_new	18	41	24	26	36	18	32	19	23	28
CTGTACAATAGGGGTC	ref_5779_new	0	0	0	0	0	0	0	0	0	0
GTGTATGTTTGCCATC	ref_5779_new	1	2	3	0	4	2	2	5	4	0
AGTGGCTTATATCAAA	ref_5779_new	105	185	188	94	243	137	226	135	198	93
TTGGATCCATGTTCGC	ref_5779_new	38	49	39	42	45	35	38	28	60	44
CGCTCAAGGGCCTGAG	ref_5779_new	21	36	28	24	42	13	47	16	36	15
GCCCGGGTAATCATGG	ref_5779_new	78	85	124	72	114	80	89	66	119	77
GGGTCCCCCAGGAACC	ref_5779_new	52	103	65	37	62	45	72	47	91	52
CAGTTGAGTAGCGCAC	ref_5779_new	45	78	57	52	83	49	83	48	105	32
CCCATTTCCGGTATTA	ref_6121_new	36	28	46	39	29	50	29	29	52	37
CATCTTTTTTACGCGC	ref_6121_new	17	21	12	13	26	11	8	14	9	8
TTCTTGTGAATGACAG	ref_6121_new	69	72	73	74	72	63	82	62	79	60
ATCGATGGCAGCCTGG	ref_6121_new	141	104	166	159	98	142	99	127	116	121
ATTTTTTCGCATGGGC	ref_6121_new	71	55	85	69	52	65	50	66	48	65
AGATTTCAGATCTAGA	ref_6121_new	0	0	0	0	0	0	0	0	0	0
CGTTCAGGCGGGGGAA	alt_6121_new	122	97	124	121	80	106	110	97	113	83
ATCATGGTTTTCATTC	ref_6121_new	11	22	16	12	9	6	12	14	18	9
TGTTGTTCGTACTCGC	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TCGTCTGGTAATTGCT	ref_6121_new	38	31	41	38	41	45	45	42	43	37
CCCCGGCGTATTTTTC	ref_6121_new	3	59	13	11	56	6	53	14	63	6
TTCATGCATTTCGTGT	ref_6121_new	61	80	90	64	76	74	56	51	78	53
GTTTAATCAATTGTGC	ref_6121_new	24	29	33	36	32	35	27	30	32	42
TTCGTATCCGGAATGC	ref_6121_new	0	0	0	0	0	0	0	0	0	0
CAGCTAAACTAGGGTT	ref_6121_new	0	1	0	1	1	0	1	0	0	0
CCAATGTTGAAATAAC	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TTTCAATAGAGAGCAA	ref_6121_new	8	3	5	5	2	4	4	1	2	5
CATGGATTCACTAATG	ref_6121_new	7	13	13	7	12	14	18	19	12	14
GTCTGGAGAGCTGGTG	ref_6121_new	24	21	30	33	16	25	21	17	17	18
CAGTGGGTCTGGTCCA	ref_6121_new	44	38	45	37	25	40	39	20	26	20
TGCATCGTGCGACGTG	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TTGACCAAGCGCATGA	ref_6121_new	24	25	32	20	19	20	18	30	31	17
ACATCACTAATAACAT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
GTCCAGAAGCTTGCAC	ref_6121_new	18	7	19	17	14	21	9	14	15	10
GGCTGCGCATGCAACC	ref_6121_new	210	255	264	204	228	242	271	211	270	211
TGCGTGTAAGTTTTGC	ref_6121_new	138	122	162	158	120	135	154	134	128	147
TGCTAGTCCGCATTTC	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TACCTCGGCATTGTTA	ref_6121_new	9	7	12	21	9	10	3	9	6	8
GGCACTTAGAATACGG	ref_6121_new	2	10	11	11	0	2	9	5	2	2
TCGGTTCCAGGTGCTA	ref_6121_new	5	5	6	8	14	0	9	6	8	4
CCCATAATTGGGTCAG	ref_6121_new	16	16	20	25	16	16	16	12	15	10
CATTTTAAGCTCCATT	ref_6121_new	18	21	26	18	15	15	16	11	11	19
CGATCGAACTTTCTCG	ref_6121_new	23	39	15	20	63	19	42	13	64	12
TCACTCTGTTGGCGTA	ref_6121_new	12	21	17	16	25	22	14	25	20	16
TGAATCATACGGACGT	ref_6121_new	17	23	5	18	9	12	15	17	19	15
CTTTCCTATTCCGTCA	ref_6121_new	84	79	94	101	80	79	80	92	82	60
GGTCTGCCGTATTAAC	ref_6121_new	11	16	35	21	20	22	24	23	18	26
TTCAGGAAGTTTTATT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
CAGTTTTTCTCTGGCG	ref_6121_new	55	56	87	89	56	62	58	60	74	78
AATATGTTCAACCTGC	ref_6121_new	70	79	122	104	70	76	74	75	104	86
TATGTTCGATTGTGAT	ref_6121_new	36	32	44	38	40	23	37	16	19	30
CTCGTACGCATATTTA	ref_6121_new	101	74	125	83	70	94	99	82	90	78
CTAATTTCTCTCCACG	alt_6121_new	11	12	11	4	8	10	9	6	12	9
TGCGGTTTTTCACACG	ref_6121_new	9	7	8	12	15	17	11	14	9	9
TACTATGGCCTAAGCC	ref_6121_new	40	43	57	60	53	41	37	41	56	49
GTTTAATGTGTCAGGC	ref_6121_new	18	16	28	18	11	19	14	22	12	16
CACACTTGGTCTTCGA	alt_6121_new	18	17	27	34	28	27	29	19	23	22
CTTCGTTTTTGTTAGC	ref_6121_new	102	98	116	119	94	103	103	91	111	94
GTTGTATCACTAGACT	ref_6121_new	28	25	45	30	27	23	15	17	22	23
TCTACCGCGCCTGTAT	ref_6121_new	28	49	40	27	56	33	53	24	52	29
CACTTAGATCGACATC	ref_6121_new	9	12	13	8	12	10	13	9	7	11
GTACGCTGGGTTGGAG	ref_6121_new	20	8	20	25	26	23	22	22	27	15
GTCGCATTATGATGTG	ref_6121_new	18	33	35	24	32	24	42	13	37	17
TTGCCATTTGTTGTTG	ref_6121_new	0	0	0	0	0	0	0	0	0	0
CATATGGATGATCGAA	ref_6121_new	97	106	116	116	122	105	101	94	96	84
AGTGATGCTTCTCTTT	ref_6121_new	23	22	19	17	14	9	21	25	19	14
AGTGCCTCTATGCAAC	ref_6121_new	11	14	20	15	13	12	12	9	18	18
CGTGTCCTGTAACGGA	ref_6121_new	64	80	78	77	70	87	74	69	71	55
CTGCGTTCTACGGAAC	ref_6121_new	34	24	48	32	26	43	36	35	41	36
AATGAGCAGCACCGGT	ref_6121_new	30	18	24	27	21	20	20	25	21	24
TATCCATTCCGTGAGT	ref_6121_new	70	45	91	77	43	67	65	66	69	55
TTTGGCTAGAAGCTAT	ref_6121_new	32	18	41	24	31	22	16	33	20	20
CTCACGGGGTCTACCG	ref_6121_new	89	50	92	54	70	69	82	58	70	60
AGGCCCTATTGTGTAG	ref_6121_new	20	4	14	15	16	11	12	14	16	12
TAGGAACCAAGCAGAA	ref_6121_new	0	0	0	0	0	0	0	0	0	0
ATAACAAGTATAGCGG	ref_6121_new	16	15	17	13	13	9	11	9	9	13
CTGCAAGGTCATCCCC	ref_6121_new	54	37	61	47	50	45	36	44	38	50
CCGCGACTTTGTTCGT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TCGTTCCCTGGAGTCG	ref_6121_new	19	27	28	31	18	24	15	24	19	19
ACGTGACGCTATCCGG	ref_6121_new	21	22	27	20	18	16	15	10	23	22
GATGTTTAGCAATTTT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
GCTAGGTCAGCTTTGA	ref_6121_new	52	58	78	60	60	55	53	64	56	37
GTGCCCTAGAAACCCC	ref_6121_new	47	29	51	44	28	36	43	39	21	33
ACTGAGGAAACCCCCA	ref_6121_new	0	0	0	0	0	0	0	0	0	0
AAAGTTGTTTGTTCTC	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TAATGCCGGGGCATGA	ref_6121_new	0	0	0	0	0	0	0	0	0	0
CCGTTCAGAGGTATCA	ref_6121_new	96	87	118	111	65	108	119	92	109	75
TAGTACTTCGCAAACA	ref_6121_new	53	59	92	62	53	54	69	57	54	48
CATGCTCTGCCCGTTC	ref_6121_new	14	16	23	9	10	14	15	14	15	15
AGAGCTACCGTTAACT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
AGTATTCGCTACTTTT	ref_6121_new	11	5	15	7	12	8	6	8	10	12
GCTGACGTAACCGTTG	ref_6121_new	113	53	115	94	64	85	80	88	55	116
CCTATCGCATATAATA	ref_6121_new	18	37	27	29	36	33	28	36	26	21
AACCTGCGTTCGTACG	ref_6121_new	75	66	101	74	77	75	58	65	89	63
AGTGAGTTAGATGGTG	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TCCCTGCCAGTTGTCA	ref_6121_new	3	4	3	1	3	6	2	3	3	2
TGTGTGTTCAAAGCCG	ref_6121_new	101	101	127	93	80	111	95	75	109	93
GAAAATCGTAGTATTA	ref_6121_new	13	6	15	15	4	7	11	11	11	8
TGTGCCGCCTTCTCCA	ref_6121_new	65	61	66	58	60	58	75	66	64	53
TGGAAGTGAGTGGAAG	ref_6121_new	81	87	116	82	82	95	108	84	104	81
TTTTTACCTGGTGACC	ref_6121_new	165	168	251	203	175	184	208	187	187	186
CGTTAGGTATATTCTT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TGCTCCCAGAGATGCG	ref_6121_new	4	3	6	2	2	4	3	2	3	6
ACACACCTCCATCGGC	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TTGTCCATTGATGCTG	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TTATATATAGGACGGG	ref_6121_new	13	14	15	14	15	18	11	13	21	9
CGGGCCTTTGATTGCC	ref_6121_new	74	66	71	63	64	79	72	58	62	57
TAGGATGAACGTGCGA	ref_6121_new	3	2	6	4	7	2	9	5	3	2
ATCCCCTACGTTTAGA	ref_6121_new	8	18	11	12	15	7	17	14	17	12
GGTATGGTTACTTATC	ref_6121_new	50	46	43	49	45	43	61	38	57	36
AGTTTGAAGAACTTGG	ref_6121_new	37	34	45	40	37	30	31	26	36	34
TTCGCACTGCCGAATC	ref_6121_new	29	25	35	28	21	30	27	20	28	26
GGCAGAGGTATCGTTA	ref_6121_new	14	20	19	16	12	12	20	13	16	16
TGACGTTATGTCTTTT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TGGTTATGTGCTATGT	ref_6121_new	64	50	89	90	53	84	68	66	71	61
GTGTAATAATTGCCTA	ref_6121_new	11	9	10	7	14	14	22	14	10	10
CTAGACTACTGTGTTA	ref_6121_new	2	5	2	2	5	2	4	3	8	2
TTTATCTCGCAAACCT	ref_6121_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTTAAAAGCGT	ref_6121_new	4	7	7	9	4	2	6	7	4	5
TTTCCCGCACCGCAAA	alt_2349_fdr	41	33	41	42	32	35	30	40	43	35
CGTGGCAGATAACACG	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTTTGTAGTTAGA	alt_2349_fdr	25	21	39	22	23	24	33	24	19	22
AGGGGATTTTTTCTTA	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
AAATTTTTCGCCCCAT	alt_2349_fdr	8	13	14	13	5	6	9	7	10	4
GGCCTTAAAGTACGGG	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTGGTTCGCGTCC	alt_2349_fdr	191	177	209	176	179	148	159	144	186	165
CAGAGTTTCCGTGTTA	alt_2349_fdr	26	31	28	45	43	26	29	37	25	25
GATCTCTTGTCCGACA	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGGGCATTATCA	alt_2349_fdr	22	27	31	23	14	25	18	16	23	23
GTTAATTGTCGTTCGC	alt_2349_fdr	9	11	12	19	19	16	11	9	12	10
TGGACATTCGGTGTTC	alt_2349_fdr	327	264	354	328	267	302	258	265	287	264
CTGTCATGAGTCATGC	alt_2349_fdr	0	0	0	1	0	0	0	0	0	0
GGCCCACGCATGTTAG	alt_2349_fdr	14	21	36	26	17	16	17	26	19	10
CTTTAGCGTGGATACT	alt_2349_fdr	27	17	24	16	22	21	11	18	17	15
CTTTGCACGTTTCGCT	alt_2349_fdr	50	58	72	58	63	48	42	48	52	44
AGCCGACCTTTGCATC	alt_2349_fdr	44	39	34	40	37	32	35	37	55	48
GTAAATGGTCACCGGG	alt_2349_fdr	3	2	4	2	0	3	3	2	0	1
CAGCAGTACATGGGGC	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
GGGGGATTGCAGCGTT	alt_2349_fdr	41	44	42	43	51	41	41	34	45	23
TAGATGTTATCGATTT	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGGTTTTGGAACG	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
ACGAAAGTCTCTAAAG	alt_2349_fdr	19	6	9	10	12	7	5	6	10	11
TACCGACATTGTCCGC	alt_2349_fdr	16	8	17	14	14	14	11	10	14	13
GCTGTTAGTTCTTCTG	alt_2349_fdr	43	63	72	72	66	58	77	53	78	63
CCTTATACCTTGCCAT	alt_2349_fdr	8	5	6	7	12	6	8	14	11	4
TCCAATAGGGTTGGGG	alt_2349_fdr	12	15	19	16	20	15	17	9	16	7
TTCCGGGCTTATTGGC	alt_2349_fdr	7	5	8	6	10	1	6	11	7	7
GATAATCACATCAGAA	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGTGTATTAGAT	alt_2349_fdr	15	17	20	23	19	11	29	19	24	15
ACCCTGCGCGTAACCC	alt_2349_fdr	107	71	134	124	101	105	97	84	105	79
TCATCGTTGCCACATA	alt_2349_fdr	44	26	59	54	33	47	55	41	44	47
TATTCAATAATGCGTT	alt_2349_fdr	1	0	1	1	1	0	1	2	4	2
GTTGCGGTTTGTTGTC	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
TACACAGAGATACGTA	alt_2349_fdr	55	62	71	52	47	44	52	49	57	49
CATCTGTGTCCCGTAA	alt_2349_fdr	29	19	48	36	22	31	36	34	14	33
CGTCTCTATTTATGGG	alt_2349_fdr	121	115	113	114	97	109	111	84	120	101
AAGAACCTGTCCACTT	alt_2349_fdr	171	207	218	187	183	155	263	155	218	156
TTCTACCTCAGTGAAT	alt_2349_fdr	27	28	41	33	31	34	34	32	29	24
TTTTCACATATCTCAA	alt_2349_fdr	2	1	1	1	1	1	1	0	1	1
GGGGTAGACCACGTGC	alt_2349_fdr	13	7	8	6	5	5	10	9	0	8
AGCAGATGCCTGGTCG	alt_2349_fdr	16	19	24	30	17	20	8	21	14	18
CGTGTATGTGCTTATT	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTCGCGTGTGAAT	alt_2349_fdr	27	57	41	51	64	58	52	47	55	34
ATAGCTCTCAAACAGG	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCCATAATCTAAG	alt_2349_fdr	56	43	66	58	40	40	65	55	40	59
ATCATTCGTGGTGTCT	alt_2349_fdr	18	17	11	21	17	16	14	14	11	19
TCGTTGTATCGTGTCC	alt_2349_fdr	37	35	44	40	42	38	41	30	37	31
TAGGTCTGTGCCCACA	alt_2349_fdr	46	47	53	34	65	29	52	27	58	44
CTTTGTATCTTGGGCC	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGCGAAGCTGTGC	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTGTTTTTGTGGG	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
TATTCAGTTCTAGGCC	alt_2349_fdr	12	6	9	14	12	7	16	5	2	11
TCGACCGCTGAAATTA	alt_2349_fdr	39	28	28	24	22	23	20	29	43	35
GTCTTGGTAAAGTGAG	alt_2349_fdr	47	46	61	39	50	48	42	40	60	47
CTACCTTGCGAATTAA	alt_2349_fdr	83	79	84	87	82	57	112	62	95	62
TATCTAATCGTCTGTA	alt_2349_fdr	211	263	264	247	230	236	237	213	253	214
TGCTCGGTCACAATCA	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCCGTATCTTAGG	alt_2349_fdr	0	1	0	0	0	0	0	0	0	0
CTCCTCAGTCCCCGGT	alt_2349_fdr	10	11	24	17	16	9	10	14	10	13
CGTCTTTTTCTTGATT	alt_2349_fdr	42	29	48	43	34	39	29	41	25	37
TACTTGCTGTATCGGT	alt_2349_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTGTGTCTAAAAG	alt_2349_fdr	94	86	103	93	113	57	93	86	84	77
AATTAAGGCACTAGCT	alt_5707_new	8	10	8	7	14	11	15	13	9	4
TACAGTGTTGATTGAG	alt_5707_new	185	353	247	246	378	185	410	199	431	200
CCTTTGACAGTTAGAC	alt_5707_new	14	20	11	13	22	8	21	15	32	3
GCGATTTAGAACAGTT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TTCTAATCAGTCGCAA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
ATGGAGTGCAAGCGTG	alt_5707_new	63	132	104	63	137	45	144	55	149	50
TCCTCTTTTCCTTAAC	ref_5707_new	0	4	2	3	5	4	6	2	4	1
TGCCGCCCCTTCCTGC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TTCAGTGCTTCCGTGA	alt_5707_new	19	48	20	15	49	22	40	25	32	17
TGGCTCCGCTATCGCT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
AATCCCGCCGGTCTAC	alt_5707_new	11	19	10	14	28	12	23	11	29	9
ACGGGGTCCTACTGGC	alt_5707_new	9	85	9	20	96	17	71	15	77	9
GCGTACAAACTTGTCT	alt_5707_new	2	5	3	2	3	2	6	1	8	6
AATCTTTGCTCCCGCT	alt_5707_new	10	13	13	15	23	10	16	7	21	12
AAATAGGTATTGTGTT	alt_5707_new	5	11	7	14	11	6	18	12	20	5
TTGCAGGGCTCCTTAT	alt_5707_new	12	20	8	14	17	6	13	7	14	7
GCGCTGAAACACACCT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TCAACAATTGCTGAAG	alt_5707_new	6	13	9	15	15	5	13	5	18	10
GTGTTTTTCGGCACTT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TGCCCCAGGGTGAAAA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
GACGTAGTCACTGTAT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
ATTGGTGCGTCCAGCA	alt_5707_new	30	38	26	14	42	20	31	21	42	33
CTGTTTTCGCAAGGAC	alt_5707_new	19	29	21	32	28	24	32	16	33	18
TGATTCTATGCCTGTT	alt_5707_new	16	24	13	12	22	14	36	11	23	12
CTATTAGCGGGGAGCG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
ACCCCCATTTCCCTTT	alt_5707_new	0	0	0	2	3	1	1	0	5	0
GACTAGAGCGTTCAGT	alt_5707_new	17	26	18	11	30	16	28	14	36	10
TTATGGTTGTTAGCTG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TATTGCCTAAGACAAC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TTGTGAAGCGTTAGAG	alt_5707_new	29	59	40	23	73	28	51	27	67	31
TTCATCTCCCTGATTA	alt_5707_new	5	15	4	8	20	10	23	5	14	16
TAGAGGTGCGTGGTTC	alt_5707_new	7	24	12	12	19	10	18	12	19	9
CTTGGCCATTTATATG	alt_5707_new	4	17	5	2	15	2	16	4	20	2
ACTTCACATGTTTGCC	alt_5707_new	238	449	293	236	471	237	511	189	480	186
TCAACTGTCCAAATCT	alt_5707_new	60	117	89	72	134	64	128	49	109	77
TAGAATCCTGGTTCAA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TGTCTCACCAATGTTT	alt_5707_new	33	57	48	37	66	31	67	30	69	36
TGTCATCCAACCCATA	alt_5707_new	11	27	14	16	35	8	18	14	26	12
ACGGCAAAGTCCCAAC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
GGCTTGATAGTCTGTC	alt_5707_new	16	38	19	23	31	14	29	18	33	29
ATTTAGGCATACAAGT	alt_5707_new	98	129	87	94	146	70	148	82	154	48
GCTTATTCTCTTTCGA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TGATCCTCGCTTTTGA	alt_5707_new	4	18	18	3	9	3	21	6	8	6
AGCACCCAACATAACG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
AATCTCAGCTCACTAA	alt_5707_new	9	17	12	11	23	14	18	9	21	16
ATTCATGTGAGTTTTC	alt_5707_new	114	148	103	101	165	96	150	88	156	94
GGGTCTACTCCTGCGA	alt_5707_new	34	44	30	28	61	44	77	19	55	31
CGGAGGATCTAGAACA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CGTATTTTGCGTCACT	alt_5707_new	4	8	6	5	12	9	18	14	15	6
ACGGCATCTCGATGTA	alt_5707_new	15	18	15	19	25	14	40	14	35	6
GCGGCAGCAATATAGC	alt_5707_new	6	4	5	4	6	4	10	3	3	3
ACAAGGTAGTCCCTCA	alt_5707_new	23	31	18	18	31	6	44	21	35	14
TAGCCTTTCACCTCGG	alt_5707_new	0	0	0	1	0	0	3	0	2	0
TGGCATATCCTTCTGT	alt_5707_new	22	24	20	22	39	22	29	13	39	13
GCCGTTAGACAGGGCC	alt_5707_new	8	27	9	8	15	3	24	8	24	9
TTGTATCCCCTGGACT	alt_5707_new	146	384	200	167	381	155	382	169	396	147
GGGTTTACTAACTCCT	alt_5707_new	46	92	57	57	106	58	93	53	92	36
TGGGAATATTAGCCTC	alt_5707_new	10	21	15	13	22	10	29	12	33	4
TAAAAGAACTCGTTAG	alt_5707_new	20	50	26	19	70	22	55	21	47	23
ATATGGCATCGATTTG	alt_5707_new	19	23	23	18	32	28	34	20	23	22
AAGATTTTTTTTTTTA	alt_5707_new	15	15	26	16	30	26	31	10	27	12
TCATCTAATTCTAGAA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
ATATCTCCGTTTGGTT	alt_5707_new	0	11	3	2	8	2	5	3	9	5
GTTTTTTCATCATTCT	alt_5707_new	17	54	40	30	49	30	38	16	51	37
TGCCTCGTTTTCCGCA	alt_5707_new	10	19	17	14	13	13	12	8	11	5
GCACCGACTTGTTTGC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CCGACCGGATGTATAC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CTTCTCTCCAGCCAGG	alt_5707_new	20	45	36	30	59	15	51	23	51	25
AGCACACACTGTCGCC	ref_5707_new	179	286	230	173	294	156	271	155	302	155
AAGATTTTTTTTTTTT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
AGGTCATTCTGCTGAA	alt_5707_new	41	69	38	41	62	54	73	31	67	33
TACCGCTCTCGTGAAT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CTAGGCTATCTAAGTC	alt_5707_new	16	13	17	6	23	16	26	11	16	7
GTGCACCTAGCTCAGT	alt_5707_new	1	1	0	1	7	0	0	0	1	0
CGTTAGTAAGGGTCAA	alt_5707_new	6	6	4	0	9	5	7	1	9	2
GATATAGCGTACCCCA	alt_5707_new	26	37	20	26	39	15	32	20	47	14
CACGAGATTTTACCGT	alt_5707_new	2	0	1	0	2	3	1	0	1	1
TAGAAACATTTCCACC	alt_5707_new	12	20	13	16	28	11	21	10	15	9
GGGACTATGGGACTTC	alt_5707_new	50	83	73	59	67	62	115	53	100	56
ATCGATTCGAGTATGG	alt_5707_new	15	22	16	6	12	4	21	7	16	10
TTGTGTGGTGGGATGG	alt_5707_new	16	30	21	17	27	15	38	11	28	15
TATGGGATAATTCTTA	alt_5707_new	25	27	35	30	42	29	39	17	46	24
GATTTGCCCGAAGTCT	alt_5707_new	27	54	36	22	46	21	53	25	42	24
AAGCATCGTATTACAA	alt_5707_new	12	11	6	10	18	9	9	9	12	5
TCGTCAGTAATTGTAT	ref_5707_new	137	239	168	160	234	143	259	139	296	133
GCCCTTGAATTCACTA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
GTGTGATAAGACCCAT	alt_5707_new	10	26	18	18	27	19	27	17	25	16
GATACTTTGCGCGCTG	alt_5707_new	7	17	4	7	23	7	16	7	11	7
ATGGAGTGCACCCCAA	alt_5707_new	65	83	67	68	118	77	109	69	112	59
GTAGCCATTATGCCAG	alt_5707_new	26	52	20	30	45	18	41	21	45	15
CTAGACCGTTTAAGCG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TGTATCACTATCTTCT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CTTTTAGCGGGGAGCG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CGCTAAAGATCGATTT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CGTCGGTGGTTTGGTC	alt_5707_new	7	10	6	8	9	7	8	4	14	4
TCGTGGGTCACTTGGT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
GGCCAGGTCATTTGGC	ref_5707_new	67	185	96	76	149	67	172	62	190	60
TCGGGCCTCTGCCATC	alt_5707_new	6	11	16	22	20	8	28	8	25	12
CGGTATTGCTGGTTCT	alt_5707_new	12	15	16	13	20	16	24	12	16	13
CTAATTTTATCCATCA	alt_5707_new	1	2	2	0	1	0	4	0	6	1
CATTAATATGGTTACT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
GCGGTTCGGGTCGTTG	alt_5707_new	1	4	1	0	4	3	6	0	8	3
CAGGGTTGTCATTTTG	alt_5707_new	35	75	31	35	69	39	63	26	59	16
TACATCCTACAGCCAC	alt_5707_new	6	42	23	14	41	12	35	13	31	10
CCGAGTTTCCTGTCAC	alt_5707_new	17	38	16	13	41	6	71	12	45	8
ATATTTTTGGTATGCC	alt_5707_new	44	71	33	32	73	39	71	28	64	22
GTCCCCGTATTTCGAA	alt_5707_new	7	28	7	6	42	3	20	4	25	4
TACACCTAATCTTCCA	alt_5707_new	10	33	13	22	19	18	33	11	27	14
TCTCAAGAGTCAGACT	alt_5707_new	10	7	5	3	4	3	6	3	11	5
GGGTTCCGAGTCTTTG	alt_5707_new	20	26	20	16	35	22	26	15	33	12
ACCGGTGCCCATGAAT	alt_5707_new	4	25	11	0	29	6	28	5	23	0
CAAACATTCTCGTATA	alt_5707_new	6	11	10	5	14	5	8	9	3	3
AGATCTGTATTGCGTT	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CCCGACAAGATGAATT	alt_5707_new	0	6	3	2	5	1	12	1	6	5
TTTGGTATCACAGGAC	alt_5707_new	30	37	31	16	55	15	43	15	28	20
CGGGTCACGACCAGGC	alt_5707_new	2	24	7	4	32	7	28	6	30	3
AACGACGGTAGATGCC	alt_5707_new	4	14	5	7	11	2	16	5	16	13
TGGAGGGAGTGCTGCA	alt_5707_new	15	29	16	9	22	8	16	22	26	10
ATACATGCGTTATAGC	alt_5707_new	57	98	68	45	116	40	97	56	123	44
CACTGGACACCAGCGG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CTGTTCAAGGTACGTC	alt_5707_new	12	20	19	12	24	9	22	8	27	7
CTTCTTTTCTTTCGGG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CGTGTTCATGAATGTG	alt_5707_new	9	63	17	9	63	6	71	12	67	6
CGATGTGGACTACATC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
AATAGATACCAACTTG	alt_5707_new	12	28	12	12	36	19	28	11	32	17
CGGCGAGCCGATGCTG	alt_5707_new	0	0	0	0	0	0	0	0	0	0
AAGATTTTTTTTTTAC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
TGTAGTTGTCGGGTTG	alt_5707_new	4	10	8	1	6	4	17	1	6	1
ACTTCACATGATTGCC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
CATCACGTGGGAGTTA	alt_5707_new	106	213	125	119	218	95	223	97	241	117
AGATCTAGAAGGATTC	alt_5707_new	0	0	0	0	0	0	0	0	0	0
GTCATCTGGGCGCTAG	alt_5707_new	4	5	5	6	6	3	9	3	7	8
GTACTACAGGACCTGT	alt_5707_new	24	69	30	17	76	34	72	22	73	30
TGCTTTCATTCCATAG	alt_5707_new	26	46	28	29	48	21	54	18	70	26
ACAAGGTAGTCCCTAA	alt_5707_new	0	0	0	0	0	0	0	0	0	0
AGTAGACTATGGATGT	alt_5707_new	18	23	21	15	40	14	34	20	49	12
GTCTTCTTAGGTATTC	alt_5707_new	60	86	65	42	86	51	102	52	80	43
ATCACTACCTATGCTC	alt_5707_new	8	8	9	4	5	4	8	3	12	3
GAGCTCATTAGTCAGG	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TGGACCAAGGTAAGCA	alt_5860_new	66	66	89	78	80	62	58	55	56	59
AACGATTTATGGTACG	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TTTTCGTGCAGCCTTC	alt_5860_new	79	81	122	112	78	82	102	116	95	87
GGTCCTAGCTCAGTTT	alt_5860_new	335	350	413	347	411	288	389	349	409	287
ATGTGGCACTTGATGT	alt_5860_new	4	3	3	4	4	7	6	5	7	2
CTTAGTCTCGTTCCCA	alt_5860_new	15	25	18	27	28	29	25	21	29	23
AGGGCACTTTCATCGT	ref_5860_new	69	83	67	73	86	59	80	51	84	60
GCATAGAACGCGCCTC	alt_5860_new	7	11	12	12	16	18	10	13	18	9
GTGACGGATGGTTGGT	alt_5860_new	11	12	10	11	8	7	8	7	8	9
TCTGCTCTGTCCTGGC	alt_5860_new	79	60	95	66	70	64	74	59	96	45
GGCTGTACGGGCAGTT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
GTTTCTTAGGCTATTC	alt_5860_new	91	91	141	95	98	91	115	93	93	107
TGCCAGCTTGTGCGGC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
GTCGCGCCTGGCATAG	alt_5860_new	60	72	96	61	66	70	65	72	71	58
AGGTGGAAGTATAGGG	alt_5860_new	0	0	0	0	0	0	0	0	0	0
CCCTGTGTCATGACCT	alt_5860_new	108	89	120	129	96	105	105	99	100	110
AGATGCGAACCTTTAA	ref_5860_new	103	103	123	106	103	96	95	86	121	101
TTGTTCATTCCTTTCG	ref_5860_new	197	165	232	213	165	179	186	145	169	147
CATAACTTCGGGCTTC	alt_5860_new	0	0	0	0	0	0	0	0	0	1
GGTCACGATCATGCTC	alt_5860_new	10	7	10	10	10	9	6	7	7	6
TAGTGCGCGTTCGGTA	alt_5860_new	21	32	41	32	23	23	35	18	34	25
GAAATGGTAACGGGGT	alt_5860_new	20	12	35	23	16	21	26	22	13	23
CTGTGGGCAGTTCATC	alt_5860_new	7	3	11	13	6	10	5	7	9	2
GGTCTTATTTCTTGAG	ref_5860_new	29	56	51	47	57	39	59	33	57	37
CTGCACAAGCCTAGAG	alt_5860_new	0	0	0	0	0	0	0	0	0	0
CATGGGCACTTGAAGG	alt_5860_new	39	48	62	62	41	47	46	38	41	40
TGTCGGTTATTAGTCT	alt_5860_new	45	68	51	81	86	62	71	53	67	53
TCTACCAACGTCCCGC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TTCTCGTTGACCGGTC	alt_5860_new	33	32	37	29	35	21	37	35	28	17
AGCGAGTGTGACCTAT	ref_5860_new	30	30	56	46	43	46	52	37	41	42
AGTTGTTTGCTATTCG	alt_5860_new	12	18	17	11	16	5	19	6	20	14
CTCCGTGTTATGTCTC	alt_5860_new	4	1	3	3	12	6	8	3	10	1
GGCTTTTTTGGTATTT	ref_5860_new	69	74	71	73	94	76	80	80	89	65
CCTTCTGAGTCGCCCT	alt_5860_new	34	23	36	22	25	24	21	28	27	24
TGCCAAGCTAAATGGA	alt_5860_new	23	32	32	19	28	24	21	14	22	13
TGATTGGGGTGGAGCC	alt_5860_new	41	40	37	26	53	37	60	39	50	36
CGTTTCTCTCGTGCAC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TTTATTCCGGGGTCGA	alt_5860_new	56	32	43	43	38	43	45	44	41	54
AAAGAAACCTTGTTCA	alt_5860_new	170	134	202	184	149	149	182	149	171	148
CCACTCATTGCACATT	alt_5860_new	4	8	5	4	13	13	9	11	13	12
TACACACAGGGGTCCC	alt_5860_new	45	26	58	41	31	41	33	39	32	21
CCACCCCAGTTTTGTA	alt_5860_new	0	0	0	0	0	0	0	0	0	0
ACTCGGCTGTGACCAG	alt_5860_new	4	0	5	1	2	1	4	0	1	3
TACATCCGTTGGCGCT	alt_5860_new	15	18	17	11	19	16	16	13	22	16
TATTTATCTTACCTTA	alt_5860_new	0	3	0	3	10	0	4	2	6	7
TCAACGGCTTGTCTTA	alt_5860_new	42	56	55	49	49	60	71	49	48	50
TGTTTTCTCGAGCGAA	alt_5860_new	19	21	20	17	17	20	19	15	15	17
TTTGCTTAACCGAATT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
CACTTCATCCCTCAAT	alt_5860_new	4	18	10	16	25	13	11	7	15	10
CCATTCTACTCGTGAC	ref_5860_new	130	158	182	161	160	139	189	144	175	131
TAGGGTCGTTGGCACG	alt_5860_new	28	33	43	31	26	39	30	33	46	25
ATAACGCGCCCCACCA	alt_5860_new	160	137	184	184	182	150	190	152	162	159
GACACGCTGCTGTAGG	alt_5860_new	70	40	90	69	71	77	62	76	77	40
TAGTATATGACTGTAC	alt_5860_new	7	9	7	13	9	6	5	6	5	8
ATGATTTCAGACGACG	alt_5860_new	80	72	73	51	53	50	66	45	70	42
TTTAGGTCATTTTTGA	alt_5860_new	15	19	20	11	15	15	26	13	19	12
TACAGTGCTTGGTATT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TTTGTCTATTTGCCCG	alt_5860_new	0	0	0	0	0	0	2	1	0	0
GTATTCCCGTGAAGCT	alt_5860_new	17	20	20	24	13	23	23	14	24	26
TTGCGAAATCCAATCT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
GTAATACACCTATTTA	alt_5860_new	76	97	112	83	67	70	96	94	94	74
TACTCCCCCGGGCCTA	ref_5860_new	27	34	28	27	53	16	39	20	38	31
AGTGCCGTTGTTTGCA	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TGATGCAGCAAGCTCT	alt_5860_new	5	4	5	9	5	9	2	4	6	9
TTTTCCCGTGCAAATG	alt_5860_new	19	21	27	22	14	19	15	11	17	10
TTTCGGCCAGTCATTA	alt_5860_new	6	8	7	8	10	4	9	9	13	9
CGCTAGAGTGATGCGT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
ATAACACTTTTCAGGG	alt_5860_new	45	42	66	56	62	59	54	66	65	53
TTGATCGGTACCATTC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
ATAGTTGTCGGCCCTT	alt_5860_new	21	16	34	24	22	29	21	8	24	20
ACCCTCCACCCTTCCA	alt_5860_new	51	43	33	53	47	40	37	44	54	42
AGTCGCTTGCCTAATA	alt_5860_new	36	50	51	44	36	45	50	39	54	28
GTATGGAACTGTATTT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
GGACCCTACATACAAT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TGGGCTCGTGTCCCGT	alt_5860_new	45	38	57	40	44	49	51	33	29	34
TTCTTAAGGTACGTGA	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TCGCATTTGAGTCATT	alt_5860_new	89	87	119	92	103	80	95	86	97	77
ATTTTCTAGTATGAGG	alt_5860_new	9	10	12	7	12	13	10	11	9	9
CTTCTCTGGCTCGAAT	alt_5860_new	52	42	65	71	65	44	75	53	71	49
GATCATCTGACTGCGA	alt_5860_new	0	0	0	0	0	0	0	0	0	0
AAGAGGTGATTCTGGC	alt_5860_new	85	96	127	83	98	94	83	107	88	62
TTCTCGGATGCTCGAA	alt_5860_new	11	11	15	11	16	10	15	5	9	6
TTTATACAACACTGTA	alt_5860_new	219	255	279	247	267	245	303	221	263	181
AAGGTGGTTTAGTTTC	alt_5860_new	27	33	30	22	22	33	34	24	38	33
CACGGCCCTACAAAAT	alt_5860_new	29	42	40	33	32	29	36	46	39	27
CTTGTCGTATAGGTAC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
GTCTTTCTAGGACCTG	alt_5860_new	49	57	49	42	58	49	42	42	48	42
ACGAACTTTAAAGCGA	alt_5860_new	52	72	96	58	76	75	75	74	66	68
CGGTTAATGGATTCTG	alt_5860_new	35	48	37	40	35	23	28	28	41	26
TCGCGTAGACAACGTT	alt_5860_new	42	66	55	52	44	71	55	44	65	42
ACTCCTATGGCGCGTC	alt_5860_new	21	48	33	26	63	13	57	14	69	13
GTTTTCCAGTCAGGTC	alt_5860_new	29	28	46	37	34	35	35	25	42	31
TCTGCGGGCATAGCCG	alt_5860_new	10	18	21	17	16	18	17	15	16	11
CATAACTTCGGACTTC	alt_5860_new	70	68	77	61	67	62	59	51	60	60
GTCCTTCATTTTTATG	alt_5860_new	244	245	265	247	291	261	285	228	285	212
GTCTCGCCGTCGTAAG	alt_5860_new	2	3	1	1	2	0	1	1	3	2
TCCTCTGCGAGGTACA	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TTCGGTAATTCCCATG	alt_5860_new	30	26	24	18	26	33	29	17	32	35
ACAACTATTGGGTTCT	alt_5860_new	103	136	133	99	126	108	98	115	145	108
TTGACTTGTCGTCTTC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TTGGTTAGGGTTAGTC	alt_5860_new	39	34	49	32	39	31	32	23	40	22
GTTGGTCTGGTCTTTC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
AGCTCTTTTTGGACAA	alt_5860_new	34	41	45	30	51	42	51	54	53	40
CGTCCCCGGGTTCTTA	ref_5860_new	113	227	144	142	232	107	206	129	241	100
CCGATGGTTGGTCGAG	alt_5860_new	0	0	0	0	0	0	0	0	0	0
CACGGTCTTACCCCAA	alt_5860_new	0	0	0	0	0	0	0	0	0	0
TATCTTCCCGTTCCTC	ref_5860_new	107	114	121	104	101	90	112	82	100	92
GCAGTGGCACAAGCAC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
ATGATGAATAGCGCCT	alt_5860_new	137	128	172	110	125	125	123	96	150	100
GGATGCTCCCGCGTAA	alt_5860_new	2	8	2	4	4	1	4	1	5	4
TCCCCGTTCAACACCA	alt_5860_new	15	16	9	10	25	10	29	8	22	9
TCAACATCCAGATCGT	alt_5860_new	6	15	11	7	6	6	13	3	7	7
AAGGCACTTTCATCGT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
ACTGGACTCTTGTGGT	alt_5860_new	18	15	25	11	9	18	19	17	15	15
TGTCGCTAGAGCTGTG	alt_5860_new	14	15	27	15	20	13	22	11	24	16
GTCCTTGGCGGGAATA	alt_5860_new	144	150	166	153	138	133	149	111	139	125
GCAGTTTTTCATTCCA	alt_5860_new	8	3	14	7	12	10	14	14	12	12
ATAGTAGAAATCGGGA	alt_5860_new	157	146	177	140	179	141	172	139	157	163
TTACCTAATTATGCGG	alt_5860_new	16	22	19	18	24	20	13	15	33	11
GTAGCTTGCCTGCCCA	alt_5860_new	5	3	8	2	6	6	14	6	9	3
GATGACGCACCGCCGT	alt_5860_new	45	46	56	41	60	39	57	47	41	39
CCCGTGGTACTGAGCT	alt_5860_new	0	0	0	0	0	0	0	0	0	0
CAGCCAAGCGGGAACG	alt_5860_new	0	0	0	0	0	0	0	0	0	0
GCGGCGCGTAGTGACC	alt_5860_new	9	5	13	10	5	11	7	9	10	7
CGGGTCAGCCTGTATT	alt_5860_new	64	70	57	55	83	66	64	61	53	52
TGCCAGTGGCATGTCC	alt_5860_new	0	0	0	0	0	0	0	0	0	0
ATGGATACAGTGCTCC	ref_5733_new	6	7	4	9	11	10	12	8	13	3
AGATGGATAGAAGACC	ref_5733_new	62	88	79	68	76	65	97	74	93	63
ATGGCGTGTTATTTCC	ref_5733_new	5	13	6	11	19	11	17	12	12	5
TGCCTATCATTTATCG	ref_5733_new	0	0	0	0	0	0	0	0	0	0
AGTACATGCTCCACAA	ref_5733_new	14	21	11	19	20	11	25	11	25	15
GTCAGGGCTTTTCCGA	ref_5733_new	26	33	18	21	17	18	21	13	21	14
TCAGCCACTGCACAAT	ref_5733_new	35	69	53	53	69	44	70	42	83	31
TGTGCGTCTAACCTCG	ref_5733_new	29	23	22	20	20	24	13	17	25	12
ATGCTCTCCGAATTTA	ref_5733_new	22	38	38	37	47	40	46	23	34	27
CCGTGTCCTTTTGAGT	ref_5733_new	78	104	79	76	144	71	101	68	109	55
GAACTAGGCGGGGTAT	ref_5733_new	26	31	15	13	40	14	28	18	47	16
TGCCTCTAGTGTTTTA	ref_5733_new	4	8	8	4	10	6	10	8	7	10
GTCAAGATCAGTTTGC	ref_5733_new	12	22	21	13	24	17	27	12	33	14
CTCTAGCGGCCAATCA	ref_5733_new	2	7	5	3	7	2	9	6	13	5
CACATTCCTCGGAAGG	ref_5733_new	53	43	80	51	62	37	62	45	58	51
CTTACGACAGACGTCC	ref_5733_new	11	6	3	9	9	2	4	6	10	4
ATGTATTCCGGGTGTT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
GGGTAGTTCAATAGTA	ref_5733_new	7	4	15	7	11	5	7	5	12	6
CATATCGCGCGATGTG	ref_5733_new	22	31	31	40	35	19	35	24	32	38
CCCTTTGGCCGCATTC	ref_5733_new	22	23	18	12	34	13	33	23	29	14
TTATCTCATCTCTCGT	ref_5733_new	20	9	35	12	15	26	23	26	14	14
TGCTTTTGCCATCCGT	ref_5733_new	38	34	31	28	45	38	56	26	58	30
GTGCCTCCGTTATTCT	ref_5733_new	27	45	47	43	51	32	39	33	51	30
AACTATAGATATGTCT	ref_5733_new	36	47	58	48	43	36	40	43	49	40
TGCATTCATTTGGGGC	ref_5733_new	7	6	7	6	8	3	2	6	11	1
GATCCACTACTTAAGC	ref_5733_new	17	14	19	7	12	11	12	16	24	12
ATCCGTGGAATCGCAT	ref_5733_new	5	17	9	11	12	9	12	13	14	13
ACCCGTCTGGTTTTAG	ref_5733_new	9	14	15	5	15	8	22	13	25	4
TAGTCGGCCGCATCGC	ref_5733_new	156	182	194	158	207	145	197	146	186	118
GCCTGGGTTCGATTAT	ref_5733_new	55	78	64	48	64	39	80	41	64	48
TAGTTACGCTTCATTT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
CTGCACCGGTGCGCAG	ref_5733_new	1	0	5	5	6	4	8	8	5	2
CGGATCAAGGCTCCGT	ref_5733_new	12	14	13	21	17	16	16	13	4	9
CAACGGACATGGGGCT	ref_5733_new	46	49	57	37	48	48	37	40	59	56
TGCCTTTGGGCGATTA	ref_5733_new	6	15	5	5	7	14	9	4	11	8
CTGAGTTGCAACTCCC	ref_5733_new	81	113	93	71	137	63	135	56	137	52
TTCCCGGGTACGAGGG	ref_5733_new	130	124	121	92	156	98	153	105	143	104
CCCTAAGCCGGAGGTG	ref_5733_new	5	10	3	9	18	3	5	5	4	7
TCAGTCACTTGTAGTT	ref_5733_new	4	19	8	6	19	7	25	1	10	6
TTCGATGTACGCCGCA	ref_5733_new	33	36	33	18	44	24	27	27	34	25
CAGAGTTGCAACTCCC	ref_5733_new	0	0	0	0	0	0	0	0	0	0
GTTGTCGGTATTTCTG	ref_5733_new	39	48	36	49	40	29	53	43	59	40
ATTATCTATTTCCCGT	ref_5733_new	1	1	0	0	4	4	2	4	3	2
CCGTATGCGCTGAACT	ref_5733_new	1	6	1	4	7	3	3	2	6	3
GATTTAATAGTTACTT	ref_5733_new	64	87	89	72	119	64	112	75	108	55
GTGTGACAATAGCGCG	ref_5733_new	4	8	10	2	9	4	4	1	3	3
TAGCGGAACGAATCGA	ref_5733_new	59	52	50	67	75	61	79	40	99	59
TGCGCAGTTTCGATGT	ref_5733_new	30	32	24	24	25	28	35	16	25	14
TAACCGTGCATTTGAA	ref_5733_new	90	156	111	101	169	96	161	95	161	84
CGATCTCTAGCGGTCG	ref_5733_new	16	15	16	20	18	19	17	14	17	17
TTGCGATTTTGGTCGG	ref_5733_new	0	0	0	0	0	0	0	0	0	0
AGTTTCTACAGTCCTT	ref_5733_new	27	36	36	27	49	23	24	23	35	19
ATTCATTGCCATATAA	ref_5733_new	40	67	43	54	51	45	69	45	60	43
TGCTTGTGTTCCCTAT	ref_5733_new	17	21	20	17	22	12	20	12	18	11
TGTTTCAACAGTAATT	ref_5733_new	31	40	38	39	51	34	56	19	45	26
GCTCTGGGGAGATCTG	ref_5733_new	0	0	0	0	0	0	0	0	0	0
GCATAAGGCTGTCACG	ref_5733_new	171	216	191	177	236	152	208	195	239	165
TTGCCCGCTTGAAATC	ref_5733_new	22	35	29	15	26	26	26	20	45	22
TTAATATACCCATTTG	ref_5733_new	15	27	24	24	35	15	20	32	34	33
CCGCGTTCATCGTTCT	ref_5733_new	11	17	16	9	21	12	22	3	25	8
GTCTAAGTCTGTAGGA	ref_5733_new	10	21	10	10	9	5	12	7	5	5
CGAGCACCTGGCTATG	ref_5733_new	80	100	83	63	77	75	67	53	83	59
CTCACGATTGGTTGGC	ref_5733_new	55	94	73	59	87	69	95	48	87	60
CCCGGTAATGCGTCCA	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TTCCTCACTCACAGGA	ref_5733_new	15	38	29	17	24	27	27	19	39	13
TTTATACGAGTACGTA	ref_5733_new	41	64	69	55	79	38	60	50	71	52
GAGTGTCAAGACATAG	ref_5733_new	29	45	30	27	44	30	46	20	60	29
TATACTTTAGAATTCC	ref_5733_new	31	54	52	43	54	29	57	42	44	34
CGCTATATCCTGACTT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
CTCTTTCGCTTGTGAA	ref_5733_new	10	9	6	5	7	6	6	6	7	7
TACGGCCACAAAGGCT	ref_5733_new	7	17	25	17	29	9	15	11	24	10
GCACACAGGACTTCCA	ref_5733_new	100	116	119	108	134	105	137	95	144	102
CGCACATATTTTCCAT	ref_5733_new	75	90	91	60	86	78	85	48	103	74
CAAATACTTATGTATT	ref_5733_new	27	46	39	35	39	39	50	35	63	37
CAAATCTGTCCATCCT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TGGTTTGCCCACTGAA	ref_5733_new	0	0	0	0	0	0	0	0	0	0
CCACGGAGATATGATT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
GTTCGGTCGACCGTGG	ref_5733_new	16	28	15	10	27	14	33	16	34	18
ACTTCGATATACTTAA	ref_5733_new	33	53	48	36	64	49	68	42	79	36
GACACCCGACGTGCTT	ref_5733_new	45	73	75	59	83	51	107	44	101	51
CTTCTCGTTCCCGCGA	ref_5733_new	48	77	84	65	70	58	95	61	75	64
GCAACCGTATCCGGGG	ref_5733_new	43	53	41	41	46	32	46	29	56	35
CCTTATTCCGAATTTA	ref_5733_new	104	148	96	76	161	73	146	91	185	49
GTTCCCGTTTCGTTGG	ref_5733_new	21	21	16	16	29	6	28	13	27	17
TATACTATCGAGGTAC	ref_5733_new	46	64	38	38	56	29	67	42	70	42
AAGCGACAACGTACTG	ref_5733_new	17	27	19	12	29	15	35	17	43	13
TGTCTTACTACTTTCT	ref_5733_new	12	22	16	18	30	10	28	13	31	16
CCTCCCTATTAGGATG	ref_5733_new	123	151	125	100	146	81	159	92	173	106
ATATTCACAGAATGAC	ref_5733_new	26	32	32	26	54	25	50	30	65	31
GATCTTGTGCCCCTCT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
GTTCAACTTGAGTCTA	ref_5733_new	17	25	20	14	28	19	39	19	24	9
TACGGAGATGGCGTGT	ref_5733_new	4	7	9	3	1	4	5	3	5	1
GGGCAATAGGTTGCTC	ref_5733_new	75	108	84	85	115	83	117	63	126	67
TGGCTTTAGTCCACGG	ref_5733_new	17	25	20	15	22	12	24	16	31	8
AATCCTATTTAGTGTC	ref_5733_new	11	11	19	10	7	10	12	10	12	9
TTGAGGATGGAGATCG	ref_5733_new	28	48	40	57	64	29	64	41	63	39
GTTATTTCAACAGAGG	ref_5733_new	114	123	122	125	144	84	134	71	141	106
CATATCTTCAGCCTAA	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TTATTGCGCCGCTGGC	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TCTGATCCGTAGAATT	ref_5733_new	1	8	5	5	0	3	5	4	3	1
GCTTGGTTTCTGCCTT	ref_5733_new	42	51	29	43	33	33	30	35	44	33
GATTTTGGAATTATCG	ref_5733_new	48	77	67	49	58	57	68	63	76	47
TTTGAATTTTCAGTGC	ref_5733_new	21	35	16	19	44	23	37	21	36	11
GCGTTCCTGATATTCG	ref_5733_new	11	21	18	18	16	15	16	8	30	12
TGTACACCGCTCTGCG	ref_5733_new	75	104	105	62	120	70	111	68	99	72
GCGTCACGTCTTTCTT	ref_5733_new	22	31	23	13	23	22	41	17	28	13
TGGTATGCACATCCTT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TGAACCCCCCTGCAGT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
ACGCTGCTGCTGTTTA	ref_5733_new	68	118	98	78	119	74	108	66	104	72
AGGCCTTTACTTCGTC	ref_5733_new	23	48	42	24	45	29	46	17	43	17
TGTTTCATTACCTCGT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
CCGCTATTAAATTTGC	ref_5733_new	6	12	15	2	13	9	10	5	8	5
TCAGACCGGTCTACTT	ref_5733_new	138	228	156	141	237	126	224	133	273	130
CCGCCTGAAATCGAAA	ref_5733_new	85	111	92	74	128	93	101	87	125	67
CCAGTCTGTTCTTATA	ref_5733_new	39	40	38	30	48	52	39	37	56	44
TGGAGTGTTTCTATTG	ref_5733_new	0	0	0	0	0	0	0	0	0	0
ACAGGGACAATGCACT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TCGTCAGGTTGGATTC	ref_5733_new	0	0	0	0	0	0	0	0	0	0
GGATTACGTCTGTCGG	ref_5733_new	9	10	6	8	14	5	13	7	14	4
TTCATATTAGTGTCGT	ref_5733_new	0	0	0	0	1	1	1	0	1	0
TTGTATCGTGCGACCG	ref_5733_new	36	47	36	26	29	33	40	22	54	33
CGAGCCCTCGTTACTT	ref_5733_new	311	373	332	308	410	291	437	268	421	265
AGATAGCACTGAACTA	ref_5733_new	84	65	92	72	77	74	78	58	91	60
GGGAATTGATCCCCAC	ref_5733_new	0	0	0	0	0	0	0	0	0	0
AAGTCGGCCGCATCGC	ref_5733_new	0	0	0	0	0	0	0	0	0	0
GTGATCGGCAATTTGG	ref_5733_new	222	251	217	174	263	208	263	178	287	156
TCAAAACTATTTCTGT	ref_5733_new	49	49	51	46	53	44	43	32	49	37
AAGTATCAAAAGGTTA	ref_5733_new	33	40	21	35	30	31	35	21	56	28
CCGAGCCTATATGTTA	ref_5733_new	44	62	43	37	53	33	63	38	58	34
TACTATCGTCACCTTG	ref_5733_new	19	42	40	45	41	37	46	30	65	19
TTTGGTGGAGCTCTTG	ref_5733_new	93	107	87	65	101	72	118	73	122	73
CGTTATATCTTAGCCA	ref_5733_new	29	27	32	8	39	18	22	14	29	19
TTTCACACCAGAATTT	ref_5733_new	21	29	30	10	23	25	33	15	37	18
CTATCGGCTGATCTTG	ref_5733_new	10	10	9	13	14	9	19	6	10	14
GGTCACAGCCCCCTTA	ref_5733_new	0	0	0	0	0	0	0	0	0	0
ACTATATCGTTATCTA	ref_5733_new	26	44	28	28	40	28	45	34	45	12
ACACCTTATTCCGCAA	ref_5733_new	22	31	20	15	23	17	22	11	37	17
TCACTGTTGCTTCTAC	ref_5733_new	5	3	12	8	5	8	7	6	7	4
TAACTCTGAGTGAGCG	ref_5733_new	34	33	23	22	18	19	39	17	22	14
AGTTATTTTATTTTAC	ref_5733_new	74	104	100	78	153	87	125	86	149	75
TCGTCATTCTACTCTG	ref_5733_new	20	16	13	6	16	17	20	16	27	12
TGTAAGTGTATGATTG	ref_5733_new	126	195	143	118	174	115	178	97	150	92
AATTGGGTGGTAAGGC	ref_5733_new	20	16	25	15	10	11	16	22	17	16
GTCACTCTCCCGACCT	ref_5733_new	2	13	8	6	12	2	18	1	15	3
TCATTTTGGGAATTAT	ref_5733_new	4	3	6	5	8	6	7	5	2	0
GGGTAATCTACTGAAG	ref_5733_new	161	200	209	199	216	159	234	139	250	154
TCGGAGAATTTGGTAT	ref_5733_new	28	43	20	29	40	33	53	13	54	20
GGACGGATTGCTCCGG	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TTAGTCTCCTTGGGGA	ref_5733_new	153	167	174	94	171	105	184	115	184	108
TACCCCGTTTAGGCCC	ref_5733_new	113	132	138	123	128	97	138	87	151	80
GGAGTTTTTTTGTGTA	ref_5733_new	15	21	20	12	19	17	19	14	22	15
ATCTTTCGATGCGCAA	ref_5733_new	13	13	21	17	26	14	20	5	28	13
AGAGTCACCGTTCAGG	ref_5733_new	27	55	29	42	43	37	51	25	48	26
GCGTACACTGGAACCC	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TCTCACAATCTCATTG	ref_5733_new	20	13	12	15	19	17	26	19	24	9
TTAGCCACCGTTCAGA	ref_5733_new	41	73	65	42	73	50	67	45	74	40
AATATTGCAATTAGGC	ref_5733_new	70	82	100	67	93	70	113	59	102	70
AAATAACCTCCGGAGG	ref_5733_new	0	0	0	0	0	0	0	0	0	0
ATGCACGTATTGACAC	ref_5733_new	7	12	9	6	10	4	11	12	17	5
CATAGCTAATATTGCC	ref_5733_new	7	14	7	5	6	6	16	8	10	4
CTAGCACGTACGTCCT	ref_5733_new	12	17	10	16	10	10	10	11	16	9
AGCATAAAACTGCGGC	ref_5733_new	40	30	37	23	29	21	26	32	37	16
TTTAGATCAAGTCAGC	ref_5733_new	3	9	9	3	2	4	5	2	5	3
GTTCGCTTCTGTTCCC	ref_5733_new	37	40	37	33	43	34	40	32	52	32
GTTTTTTAGTGTCTGG	ref_5733_new	17	23	14	18	36	12	29	15	27	18
AATTAATTTCCGGGTT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TTGGTGCGGTCAGTTC	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TTTGTTGTAAGGATAC	ref_5733_new	23	52	36	30	58	24	51	25	54	26
ACTGGGAGCCGCCAAA	ref_5733_new	118	135	134	112	117	115	139	102	156	115
CAGGAAGAGCCTTTTC	ref_5733_new	15	28	18	17	20	13	30	16	27	7
ATGACGGCCTAAATGT	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TAGCTCAGTGGTATAT	ref_5733_new	31	42	47	35	66	45	68	26	44	30
AGTAAGCATATTGCTG	ref_5733_new	20	27	28	18	27	14	32	19	32	22
CCACCTACGCACGGCG	ref_5733_new	25	30	28	17	34	22	30	26	47	30
ATTATTTACGTAATGG	ref_5733_new	49	88	64	54	73	48	67	53	74	49
GCGCGGGTACAATGAG	ref_5733_new	0	0	0	0	0	0	0	0	0	0
TTACACGTATTGATTG	ref_5733_new	2	4	4	3	6	0	1	3	7	1
TATAAGCGTACTTACA	ref_5733_new	16	17	19	15	25	7	16	6	28	12
ATCCTCGCAGGTGGGA	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
GCAATTAATCTTGTAG	alt_2529_negative	47	101	47	41	115	42	128	31	119	64
AGTCATCTTTAAAGTG	alt_2529_negative	30	79	37	19	82	36	76	22	85	22
CCAAAAGTTATCTTCC	alt_2529_negative	3	7	2	2	5	5	10	2	6	2
TGCCCTGCTGAAGCTA	alt_2529_negative	2	1	8	0	4	2	3	1	1	1
CTCTCTCGCAGGGGAT	alt_2529_negative	3	25	13	9	26	4	22	10	29	8
GCCGCGTACAACGAGT	alt_2529_negative	2	7	8	6	9	2	12	2	9	5
GCCCGACGTATTGACT	alt_2529_negative	4	17	7	11	18	5	22	7	22	3
TCCTGACGACCGTGTA	alt_2529_negative	1	12	2	1	13	4	12	3	14	5
AGGGCCTTCCATGTTG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
GGTTGGACTACGGACA	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
CGTTTTTCAGGTTCGT	alt_2529_negative	5	26	8	9	20	11	32	2	21	4
CTCAATCATACGATAC	alt_2529_negative	6	36	11	11	41	6	44	8	27	16
CCAACTACCTCGGATT	alt_2529_negative	1	7	1	3	9	3	7	4	10	2
TGAGCCATAGCTCAGA	alt_2529_negative	10	42	20	7	45	20	35	13	40	17
TACATAGCTTCTTTTA	alt_2529_negative	3	15	16	5	16	7	17	8	11	5
ACGGGTTTGAATGCGC	alt_2529_negative	25	71	41	48	82	27	93	18	98	39
GCTCCCGAGTTCGATG	alt_2529_negative	12	77	16	19	70	13	61	11	77	18
ATAACTCCTTGCTATT	alt_2529_negative	0	4	3	2	4	0	1	1	1	0
TACCAGTAATATAGGG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
ACATGTTTATTCCAAA	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
AGGAAGGTTCGGTGTG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
AGAGTTTCGCGATCGT	alt_2529_negative	24	74	34	26	76	21	75	16	89	23
TAATCTGCTTCAGGGC	alt_2529_negative	148	320	148	152	362	120	342	124	392	107
TGGTAGGGCAGTCCGG	alt_2529_negative	6	29	12	14	32	9	23	6	31	7
ACCTTTGTCATTCGAC	alt_2529_negative	11	24	19	14	26	6	27	5	22	14
GTTCACACTTGGCATC	alt_2529_negative	15	47	17	12	51	14	50	13	67	10
GTCCGGGATTACCGTG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
GTATTTTGTCTTCGCC	alt_2529_negative	15	44	23	16	50	14	38	19	58	16
CCCGGCCGTATCCCTA	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
TGTCTCTTGATGTGTC	alt_2529_negative	19	43	10	9	39	19	39	14	47	9
TCTGGAACGACATCAC	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
CGGGTAGTGCATCCCG	alt_2529_negative	94	192	100	89	211	100	220	67	240	71
ACCGCTACACGGTTAA	alt_2529_negative	42	115	37	41	129	36	141	34	115	39
TCAAGTCCGTTTGCAT	alt_2529_negative	3	10	1	1	14	1	10	3	13	3
TCAGGCCCGCAAAGTT	alt_2529_negative	125	262	149	104	259	123	295	99	335	112
TCAGGAGCCCTTTTTA	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
TTTATATTACCCGGAG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
ATCTGTGAATTGTCTG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
GCTATGCTACTTTAAA	alt_2529_negative	13	22	8	10	31	13	31	13	35	5
CTCCATGTTCCCTCGT	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
AAAGGGTGGTAGTGTC	alt_2529_negative	4	16	7	6	13	7	12	6	13	3
CACTAGGCTACAGCAT	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
TATATATTACTTGAGC	alt_2529_negative	5	20	8	4	10	9	28	6	29	6
CCAACAGATGATGGCG	alt_2529_negative	59	107	60	64	107	56	117	53	123	46
TAAACTGCTTCAGGGC	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
TTTTGCACATTAATTA	alt_2529_negative	15	68	21	25	67	19	69	15	63	23
TTTGAATCTAGAACAG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
CTTCAGTGCAAGAGTT	alt_2529_negative	111	285	138	112	254	120	288	115	291	112
TCTCTTGCATATCGGA	alt_2529_negative	9	22	10	5	26	9	29	5	28	5
GCCAGTGCGTACGTCG	alt_2529_negative	22	73	27	18	82	23	69	17	77	23
TCAGCATCAGAGCAGC	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
ATGATGGTTCTGCCCA	alt_2529_negative	3	15	8	5	27	8	25	9	20	9
TCTCTCTCCGTCACCA	alt_2529_negative	26	50	27	26	48	29	42	18	51	16
AGGGCCTTCACTGTGG	alt_2529_negative	0	0	0	0	0	0	0	0	0	0
GGCGTATCCTCCGCGG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCTCAGGGTTGTT	alt_1617_upstream	3	5	7	5	1	5	1	0	3	4
CAAGATTATTGTCCGC	alt_1617_upstream	3	3	6	1	4	2	8	5	8	6
GGAAGATACGTGGTTA	alt_1617_upstream	48	50	57	67	43	58	47	38	43	39
CGATCTTTCGAAAGCC	alt_1617_upstream	18	54	21	20	60	20	53	24	44	23
ATCGGTCATCCTTTTT	alt_1617_upstream	18	32	28	14	29	17	23	17	42	21
TATCGAGGAAAAACAT	alt_1617_upstream	34	31	34	34	23	32	28	30	24	20
CGATATCGCAACTTCA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CATATTGGGCCCCAAA	alt_1617_upstream	35	25	47	42	21	30	19	42	43	32
ACTACTCCCTTCTAAG	alt_1617_upstream	9	30	10	13	35	5	26	6	37	4
ATGGCGCCCGTTAAAG	alt_1617_upstream	64	69	69	98	74	63	60	62	88	62
GTGACGCACTCTCGGG	alt_1617_upstream	23	13	23	23	24	28	22	18	25	13
TGCGGTTGAGTGGATG	alt_1617_upstream	18	18	19	15	10	15	9	10	13	13
TGCAATAGTACGTCGG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCCTAGTGACTTG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACCCACTTTCGCTACC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GACAGCCATGCATTTT	alt_1617_upstream	11	14	14	13	30	4	28	11	20	8
TTTTGCGTGTTTCCAA	alt_1617_upstream	43	51	61	49	47	45	43	31	40	44
TTCATGCTCGTGTCTG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GTGGATTGGCTCCTTC	alt_1617_upstream	13	13	19	8	8	16	10	8	8	11
TGGAGCTGAATAAATA	alt_1617_upstream	0	2	2	3	0	6	1	2	3	0
GGGCAACTACGCTATA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGTTCTGCACAGC	alt_1617_upstream	10	5	12	9	6	6	12	7	5	7
AATTGGCGTATGCTGA	alt_1617_upstream	20	11	22	20	27	17	22	25	21	16
GCCGTGGGAGCGCCGC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGACGCTTCGTTCTTG	alt_1617_upstream	52	50	51	50	31	23	37	36	46	50
GCCTCCTCGTCCGGAT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TACAAGGAAGTTTCGC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTATGCTTTTATGTCG	alt_1617_upstream	81	60	70	50	39	63	51	48	39	51
CTTTCGTCAGTATTCG	alt_1617_upstream	60	59	64	72	52	44	66	55	72	56
GACAGTCTCATCTGCC	alt_1617_upstream	5	4	6	8	6	12	3	4	7	7
TCAAACCTTCAATTAA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGCTACTGGCTGGCTT	alt_1617_upstream	8	19	10	9	13	14	11	9	11	9
TCGACGTGGCGAGCGA	alt_1617_upstream	10	4	9	9	12	8	8	11	11	5
GCTCCACATGTTGACC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GCACATCTTTTTCTAA	alt_1617_upstream	12	13	16	20	6	18	16	18	21	17
GGACTGGTACCATGCC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GGTAACCTTTGCCCTC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCGCCAGTCAGCG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
AAACCATGTACATTAT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GGATCCTCTGGGCCAC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCTGCCCGTGTCC	alt_1617_upstream	22	13	26	20	20	25	24	18	26	13
CGGGTCCCCTTCACAG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
AACGCAGAGCGTCCGG	alt_1617_upstream	9	13	14	10	13	17	16	18	10	16
TCGCCGGACGCTTGGC	alt_1617_upstream	17	22	13	16	23	13	32	17	20	17
GTAGCTGAACTTGTCC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCGAGCTTCGTGT	alt_1617_upstream	7	4	4	6	4	6	9	3	7	9
AGATTGTCTAGCTGTT	alt_1617_upstream	11	15	23	20	19	12	22	19	16	23
CTGCTCCACCTTACTA	alt_1617_upstream	35	30	26	23	31	22	24	25	27	34
GGTCCAGGATGTAAGA	alt_1617_upstream	43	34	53	38	36	38	44	50	25	29
CTTGGGATCCTTGTTA	alt_1617_upstream	53	52	60	55	36	54	59	46	46	38
GGACCCTGAAATAAAC	alt_1617_upstream	43	32	42	54	46	35	45	39	35	56
CTATGATTGCATGTTT	alt_1617_upstream	11	9	16	10	10	19	12	18	11	10
CTGAACTTAGCACTTT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGTTGAACTTTCC	alt_1617_upstream	41	26	32	37	40	32	38	29	44	21
CGTGTATCGAACTAGG	alt_1617_upstream	4	1	7	5	4	0	6	5	1	1
TATTGGTTCGGTTTAG	alt_1617_upstream	20	39	51	29	27	24	33	33	23	24
CCCAATACTTTTCTCC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTCCCTCGAGTTA	alt_1617_upstream	10	13	6	14	10	4	13	9	17	5
TAGCCCGTTTCTGTAG	alt_1617_upstream	15	13	26	10	17	15	13	13	23	12
CTCATTAGGGGGCTCC	alt_1617_upstream	42	35	37	48	35	40	51	48	55	49
TGTCAAATGCTCTGTG	alt_1617_upstream	5	7	11	10	4	9	7	6	4	7
GCTGGCTTGGCCTCTT	alt_1617_upstream	24	18	25	19	27	23	26	22	28	26
AAATGAGGCAATCCTT	alt_1617_upstream	36	31	50	50	25	45	35	38	45	44
TTACTTTATGGTGTCC	alt_1617_upstream	18	25	33	30	18	24	23	28	23	25
CCGGTGATTCTAACTC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CACTTAAAATAGTTTT	alt_1617_upstream	31	15	27	23	27	18	14	18	15	29
GACTCTGTAGTTCAAG	alt_1617_upstream	11	9	20	10	11	14	20	12	16	9
TTCGGTTTCCGTATAG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTCCAAAAGTGCA	alt_1617_upstream	11	10	9	11	14	14	14	7	8	12
ACCCACCCACTATCCG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TATACTCCGGGGGGTT	alt_1617_upstream	14	11	24	16	10	16	10	18	15	13
GTTAACGCCGGCCAGT	alt_1617_upstream	125	106	117	128	140	114	102	121	118	105
GGCGTGCTGACTAAAT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCCCGATGTTCAT	alt_1617_upstream	8	37	15	11	36	14	39	13	28	8
GGCTTTTCATCTACAC	alt_1617_upstream	35	55	31	28	42	31	41	30	31	34
TTTGTTATGCGGTCTT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTGCATTAACAGC	alt_1617_upstream	24	20	16	26	12	22	15	20	23	15
TAAGGGACGAGAATTA	alt_1617_upstream	33	28	28	19	34	16	27	32	31	23
TATTTTCTTGTTCCGT	alt_1617_upstream	41	32	56	55	34	34	46	53	31	32
TCAATCGCGGCTTGTT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACTCTGACCATT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
AGAGCAGCAACCGGGT	alt_1617_upstream	30	19	41	17	30	32	19	29	24	28
CCCGCTTTCTGTGTGT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTTGTGTTGGCTG	alt_1617_upstream	3	6	8	4	15	5	14	5	14	1
CCTTTATAGGTTAATT	alt_1617_upstream	109	90	122	108	95	114	87	110	102	85
CTACAGTTGCCCGACT	alt_1617_upstream	9	6	8	12	13	9	14	3	9	7
CAGATTCACCAGATCC	alt_1617_upstream	14	13	22	17	17	16	13	14	9	14
TAGAGCCTTGGGTGGA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGGTCAGTTATCA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TATCCCGTAGACTTCG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTAAGCTCTGTTG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTTGGCTGCGAG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCGACAGAGTGAA	alt_1617_upstream	25	25	31	11	39	26	32	20	23	18
GAACTTTAAAAGTACT	alt_1617_upstream	33	25	22	32	18	14	30	24	38	19
GGGAGGGCTCTGGATG	alt_1617_upstream	14	9	14	9	8	14	11	10	6	3
CGCATGAAGTTAACCT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCATCCTGCGAACATG	alt_1617_upstream	20	22	28	29	16	22	18	27	21	23
AGCACTCTTGGAGCTT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CAATCCGTTTGTATGT	alt_1617_upstream	35	22	38	29	21	23	27	27	30	20
ATTCCGGTTACGTGGT	alt_1617_upstream	100	65	97	87	69	104	74	93	107	86
CGCGCGGTCATTCTAA	alt_1617_upstream	10	5	14	10	13	8	11	15	6	7
GGTCGATTCTTGTACC	alt_1617_upstream	28	58	40	40	78	29	67	30	67	30
TTGTTGAGTCGATCAA	alt_1617_upstream	80	72	108	80	74	90	89	84	80	73
ACTTAATGACGTCGTA	alt_1617_upstream	59	43	57	37	56	42	41	50	65	51
CCCGTAGGATCCCTAT	alt_1617_upstream	6	14	9	6	19	6	14	3	16	6
AGCAATCCGGTACTGT	alt_1617_upstream	57	48	65	48	58	63	47	55	63	37
TGTGTCCGATATATGC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCACCCTTTTTGTTGA	alt_1617_upstream	31	38	39	38	40	35	26	31	30	31
TTAGGTAGCTTTTATT	alt_1617_upstream	5	14	8	9	7	5	8	10	8	5
GATCCTGGACAACACG	alt_1617_upstream	22	20	38	32	27	21	17	17	23	27
GGATTTCCGGTGATTT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCCCGTCCTGAGT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGAAGGGTCCGCG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTACATCAGCTGACTC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GATTACCTTTATGGAG	alt_1617_upstream	45	40	64	52	31	39	58	47	47	43
GCAGTGATAATTGTGA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CCATCTGACCGCGTTC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TTCTATTACTCGCCGT	alt_1617_upstream	21	16	27	25	17	16	30	19	20	19
TTATTCAGCGTGCACT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTTCAATCTAAGC	alt_1617_upstream	1	14	3	1	15	1	8	0	7	0
TACCCAGTTAAAAAAC	alt_1617_upstream	8	10	11	9	13	4	15	10	9	9
TAGTTTGTTATACCGT	alt_1617_upstream	75	82	103	96	66	86	93	78	88	64
ATCCGGTCCGCTGGGA	alt_1617_upstream	21	19	41	21	23	24	19	32	21	17
TAGACGAGTGGCAAAT	alt_1617_upstream	10	15	13	20	8	7	10	6	10	8
CCGATCGGGCGAATCC	alt_1617_upstream	1	6	3	0	8	1	5	2	8	1
GGTTATTCTTGGAGGA	alt_1617_upstream	23	25	24	40	19	26	33	31	38	18
GTTCAGTTAGATTTCC	alt_1617_upstream	10	4	11	15	15	9	14	10	7	10
TACAGCGCTCTCCGTC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGCATGATTCGTT	alt_1617_upstream	0	1	0	0	0	0	0	0	0	0
TGTCCCGTTCCACTTT	alt_1617_upstream	53	62	71	65	71	33	68	55	59	65
CTGCAACGTAGTGAGA	alt_1617_upstream	0	4	3	2	2	1	0	3	8	1
AATGGGTATTTGTTTC	alt_1617_upstream	28	31	55	37	32	42	39	34	32	27
AACGTATTTCCTTTCG	alt_1617_upstream	40	30	58	51	27	37	36	43	23	33
AGGTTATCGTCCTTAG	alt_1617_upstream	40	39	39	45	34	48	45	35	42	38
TGTTCTAATAAAGCAC	alt_1617_upstream	5	5	11	8	8	10	9	12	14	15
AACGCTTTGGTATAAG	alt_1617_upstream	25	25	33	16	21	17	22	16	32	18
ATTCATCCTCGTCTTG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTATTCCGGTTGG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTACAAACGGGCCTAT	alt_1617_upstream	19	25	35	35	41	24	20	28	36	10
GAGTAGTCATGCGAAG	alt_1617_upstream	64	48	61	57	58	61	44	72	57	60
GTTTGGTTAAGTAGGG	alt_1617_upstream	15	20	16	23	15	19	21	23	21	12
TTGCGGTTCGCGCCCC	alt_1617_upstream	34	14	33	23	25	12	13	23	27	24
GGGCTTCTTAGTCAAG	alt_1617_upstream	9	8	14	7	8	5	12	8	9	9
GGGAATGGTTCTCATG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTTATACAATTAC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACGAAGCCTCGGTCGC	alt_1617_upstream	38	39	25	39	40	23	36	27	34	38
AGCTGCAGAGGTATGC	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGTGTTCGTTTGC	alt_1617_upstream	41	29	42	32	33	33	40	35	30	29
CGTTTGGCTCCGCACA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CGCATCAGCCTATGCG	alt_1617_upstream	48	44	35	31	53	29	32	38	48	39
AACGGGTAATGCACGG	alt_1617_upstream	14	20	26	24	17	28	13	14	34	21
TGCCTGCGTGCACCAA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TCTACTACGCCTAATT	alt_1617_upstream	10	16	12	18	15	12	15	20	23	12
ACGGTAGTTTCCCATG	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TATGGCGAGCATCAAG	alt_1617_upstream	16	13	28	18	8	13	6	14	9	18
TCTCCCCTGTAGTCAC	alt_1617_upstream	0	0	0	0	1	0	0	0	0	1
GTGGACGCATCGACCA	alt_1617_upstream	126	133	173	156	124	134	128	133	131	122
CGGAAACCTCTCGTGC	alt_1617_upstream	10	22	17	11	22	19	22	23	17	10
TTTGCGATCACGATGA	alt_1617_upstream	33	35	25	23	44	32	30	29	32	18
TTCACGCTCCCGTCAT	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
CTGCATTGATTCTGAC	alt_1617_upstream	76	45	80	70	75	70	93	59	60	67
ACGCTCTAGTATTCTA	alt_1617_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTTCTGATATTAG	alt_1617_upstream	69	40	63	62	62	64	46	58	55	62
CGGCAGGGGCGGTGCA	alt_1617_upstream	25	26	36	22	33	30	35	28	34	26
CGCGAGTTCACCCTGG	alt_1617_upstream	41	28	35	32	32	25	37	25	27	35
ATTCAACACATCGTGG	alt_5814_new	7	14	9	7	20	7	19	13	14	11
CGCGGTACGTCTGAAT	alt_5814_new	7	21	14	14	17	7	29	10	24	7
CTGATCCGATCGCTTG	alt_5814_new	15	44	21	13	50	24	59	23	59	14
ACAAGTGTTGGGCTTA	alt_5814_new	11	18	13	8	14	11	20	14	33	4
CCTCGTAGTCTTACTC	alt_5814_new	11	36	20	15	40	16	48	8	42	2
TTCTTCAGGCTGATAA	alt_5814_new	13	53	21	24	57	25	37	14	38	21
GTGCACAAGCCCGGAG	alt_5814_new	19	33	19	10	32	14	33	21	46	18
GACCATTCACACTCAT	alt_5814_new	175	308	189	161	357	156	323	152	360	156
AGCATCTGGGGACAAG	ref_5814_new	24	75	27	16	69	35	63	23	92	28
CTGGGACAGCGCGCAT	alt_5814_new	32	57	36	26	47	29	55	15	55	23
AACCGCCCGCCTTCAA	alt_5814_new	8	16	16	8	24	7	19	10	20	8
ACAGGCTGTATACCAA	alt_5814_new	21	44	15	9	32	16	33	14	45	14
ACGTTAAATCTAGGTT	alt_5814_new	3	3	7	6	9	3	9	5	6	3
AACTACGCTCGCGTGG	alt_5814_new	10	26	14	8	28	8	32	5	18	13
AGTGACTATACTTCGT	alt_5814_new	20	49	31	20	49	25	55	22	52	12
TGTAAGTCTTCGCCGA	alt_5814_new	0	0	0	0	0	0	0	0	0	0
AGTCTTTAACCCTGGT	alt_5814_new	46	115	46	31	96	40	77	39	92	34
CATTTTCTTCGAAAAA	alt_5814_new	1	4	3	3	8	2	5	2	6	0
CTTTCACCCACGATCC	alt_5814_new	8	27	17	5	26	14	24	11	37	11
GTGTTTCCTTCGCTCC	alt_5814_new	12	27	5	13	19	11	24	7	22	9
TACGAGTTTATTTAGG	alt_5814_new	21	58	21	23	38	19	46	13	45	30
CAATAATATAAGCCCC	alt_5814_new	1	3	2	3	5	1	1	0	6	1
GACCCAAGTCCTCTCT	alt_5814_new	22	52	24	26	51	16	48	33	61	26
CCCATTAATGTATTTA	alt_5814_new	0	0	0	0	0	0	0	0	0	0
TACTCGTTCCATAAAC	alt_5814_new	8	26	14	10	44	15	41	11	36	12
GGAGAGGGCATCGCTA	alt_5814_new	0	0	0	0	0	0	0	0	0	0
GGAGTTTGTTTAGGCT	alt_5814_new	11	39	22	18	39	25	44	22	55	16
TCGGCAGACTTCTTTG	alt_5814_new	17	18	16	15	21	6	23	8	33	9
CTTACAACGTATTGTG	alt_5814_new	16	39	15	20	37	17	37	26	44	13
ATTAAAGTTTTATTGT	alt_5814_new	0	0	0	0	0	0	0	0	0	0
TGCTTGACATACAGGC	alt_5814_new	12	44	18	9	49	14	33	25	54	17
TCTATGGGACTTTTTA	ref_5814_new	23	43	24	31	44	26	44	25	55	20
GGAGTCGGGAGTTAGG	alt_5814_new	5	24	7	6	20	9	19	13	15	14
CCTGTTGACTAGTACC	alt_5814_new	3	15	4	1	16	1	31	5	18	3
CTACGGTTTCGTTTAG	alt_5814_new	1	4	1	4	10	1	5	2	14	1
CGTGTTGCACATGAGT	alt_5814_new	57	120	46	37	106	57	122	42	123	38
CCGTAATATGGCATCT	alt_5814_new	17	82	18	12	81	23	75	17	71	10
CGTGCCCGATTCAGTT	alt_5814_new	25	62	31	27	60	24	51	32	62	29
AGTAGTATTACTCATC	ref_5814_new	66	157	87	42	107	46	152	52	151	42
TGGGTAAAGTTTGTAT	alt_5814_new	50	55	37	31	76	34	90	26	102	34
CGTAGAGATTTCTATG	alt_5814_new	0	0	0	0	0	0	0	0	0	0
TCCGATTCGCTCTTCC	alt_5814_new	43	54	35	22	42	25	55	32	38	28
GATGGGTTACCGGACC	alt_5814_new	62	122	103	71	157	81	124	64	139	54
TGTGCTGTCTCAGTAA	alt_5814_new	0	0	0	0	0	0	0	0	0	0
TTTTGCGCAATGATCC	alt_5814_new	0	0	0	0	0	0	0	0	0	0
CGATACAGGCCTCCGT	alt_5814_new	0	3	0	1	5	0	5	4	4	0
GTGCGCGTAGGAACGG	alt_5814_new	56	88	44	61	104	62	106	62	108	40
GTGAGGTGACTATTGG	alt_5814_new	1	1	2	1	1	2	3	0	7	0
GTTTGACATTCGCCCC	alt_5814_new	18	46	34	24	32	19	44	25	42	17
CATCAGAGTTAGGTCT	alt_5814_new	18	56	33	12	31	21	59	17	40	18
TACCAGTTCTCAATAA	alt_5814_new	22	39	23	17	46	11	28	17	32	12
AAGGATCTGCACTCTT	alt_5814_new	6	14	6	6	9	2	8	7	14	8
TGCGCTGATTTTATTG	alt_5814_new	0	0	0	0	0	0	0	0	0	0
TTAAATATATAGAGGT	alt_5814_new	94	209	121	120	233	100	222	97	254	92
CAGTCGTGTAATGTAT	alt_5814_new	19	115	39	26	108	17	119	23	119	26
TGTTTAGGGGACTATG	alt_5814_new	73	225	109	78	235	90	270	69	272	69
AATTTACAGTGTCGTT	alt_5814_new	24	48	31	31	50	16	44	13	51	21
TACATATGGTTAGCGC	alt_5814_new	0	1	0	0	2	0	1	1	3	1
ATTACTCATGGGCTAT	alt_5814_new	32	58	49	23	85	22	77	33	81	27
ATGACTCTTGTACAGG	alt_5814_new	0	0	0	0	0	0	0	0	0	0
AAGGGGTTCAACACTC	alt_5814_new	11	21	11	9	14	11	18	9	18	6
CGGTTATAACATTCAT	alt_5814_new	3	17	5	3	8	9	13	2	7	6
AGCTCAAGTAACATAA	alt_5814_new	25	42	23	22	39	30	45	18	41	26
AAAACATACTGGCCGA	alt_5814_new	0	0	0	0	0	0	0	0	0	0
GTTGAAATTGTTGTTG	alt_5814_new	61	137	94	67	138	66	178	63	158	54
ATCGGGACAACTAGGC	alt_5814_new	0	0	0	0	0	0	0	0	0	0
TTAACGCTTTGTAGAA	alt_5814_new	35	85	47	29	79	53	68	42	83	41
AATCTTGCTTAGCGTG	alt_5814_new	14	28	12	17	29	14	47	10	31	11
TACAGGCCCTATGAGG	alt_5814_new	32	47	47	23	52	36	53	15	56	18
AACTCTGATCCCTTGG	alt_5814_new	10	18	13	11	22	11	29	4	23	11
GGTTTCTTAGGCGTTG	alt_5814_new	0	0	0	0	0	0	0	0	0	0
CATAGATGCTTTGTTT	alt_5814_new	15	43	32	21	46	18	53	21	54	25
CTATAGATGATCACCT	alt_5814_new	51	120	63	54	118	49	114	54	123	53
CCCGCATCCACATCTG	alt_5814_new	3	2	2	1	5	1	2	0	4	1
AACCTCCTAGAATAGT	alt_5814_new	10	16	12	11	18	10	20	6	25	10
CTCCTCTACAGTTTCG	alt_5814_new	0	0	0	0	0	0	0	0	0	0
TACAGAGTTAGGCAGG	alt_5814_new	69	128	82	49	131	76	148	67	138	66
TAGCCTTGAGGTGCTT	alt_5814_new	13	30	8	17	28	5	15	12	31	10
TGCTATTTTTGCACTT	alt_5814_new	6	37	20	9	25	15	33	14	19	10
CTGACGGATATTTTCC	alt_5814_new	3	28	18	8	27	14	30	7	28	6
GTTGAAATTTAGGATC	alt_5814_new	20	24	21	19	33	15	28	12	41	14
CTATTGCCGCTTCTGT	alt_5814_new	21	57	22	11	47	19	48	12	49	9
TGCCAAGGGCTCCCAA	alt_5814_new	3	6	2	1	8	2	5	5	3	5
CAATGGTGGGATAGCC	alt_5814_new	18	35	27	16	46	19	36	26	43	20
CAACATTTAATTCGTT	alt_5814_new	63	116	83	62	137	47	130	51	131	62
GTAAAATAATCCTGAT	alt_5814_new	2	7	4	6	11	4	6	3	10	5
CTAACCACCGCCTTTC	alt_5814_new	27	52	47	30	59	39	67	27	65	35
TACTCATCAAGATAAG	alt_5814_new	0	0	0	0	0	0	0	0	0	0
CGGAGAATTTTCAGAG	alt_5814_new	0	0	0	0	0	0	0	0	0	0
GATCGCGTGTCCTTCT	alt_5814_new	50	74	49	46	97	38	86	38	79	44
TCCTGCGAGACGTTTA	alt_5814_new	14	51	27	26	58	18	50	13	46	21
TTTCCTCTTGATGGAA	alt_5814_new	9	21	7	2	24	11	9	6	10	4
AACGTTTGTTGGTATC	alt_5814_new	11	36	14	6	29	13	23	11	31	7
ACCAGCCCAGTCTTAT	alt_5814_new	63	334	101	90	302	74	284	75	324	60
GAAAAGTTTTACTGCC	alt_5814_new	43	64	33	28	59	27	54	26	60	23
AGGTCAGGCGAATGAG	alt_5814_new	48	119	66	60	106	46	118	40	94	53
TTACGTGCCATTAATA	alt_5814_new	13	32	15	11	27	16	39	17	31	17
TTCTCATCGTGGATAC	alt_5814_new	28	36	19	16	37	25	44	19	32	27
GGTGTCCCGAGTGACA	alt_5814_new	26	32	18	12	30	22	27	12	36	15
CGGACAAGTCCGGCTC	alt_5814_new	6	7	5	1	10	6	8	2	10	6
TTGAAGTGTTGACACG	alt_5814_new	34	71	41	46	92	38	79	30	71	28
CGTTGGGTCCTTTTGT	alt_5646_new	0	0	0	0	0	0	0	0	0	0
CGTTGCCCTAGTTATA	alt_5646_new	5	7	9	6	9	3	8	8	15	2
TTGACTGAGCACTTGA	alt_5646_new	55	73	84	64	52	57	80	45	73	54
CCCGTCTGTCTACGTC	alt_5646_new	0	0	0	0	0	0	0	0	0	0
TGAGTCCGCCAGTGGG	alt_5646_new	10	25	22	9	24	16	23	16	20	14
TTTGGTGATTGTGTTG	alt_5646_new	11	9	8	14	9	6	5	13	11	8
CGTAAGTCTGCAACGG	alt_5646_new	0	0	0	0	0	0	0	0	0	0
ATAAGATCAAACAGAC	alt_5646_new	17	8	28	22	25	20	17	14	17	15
AGTGTGGCAACTACCT	alt_5646_new	41	52	57	49	58	48	54	51	63	47
ATTTTCTGTATTCTTA	ref_5646_new	80	76	95	83	94	72	82	64	78	67
ATGCCCGTCTTTCAGG	alt_5646_new	1	6	1	3	7	3	10	2	7	4
TTAAGTTGTAGCCCTA	alt_5646_new	17	16	24	21	18	14	31	9	25	15
AGTTTGTTCTCCCCTC	alt_5646_new	10	30	14	11	16	14	18	15	30	12
AGCGACATCGATTTTC	alt_5646_new	5	5	10	5	5	1	7	2	8	4
CACCAGGGTGTGCCTA	alt_5646_new	29	95	31	36	91	41	77	39	88	29
ACATCTCATCTGCGAT	alt_5646_new	12	21	25	14	23	15	17	11	25	13
GGGTGGATTCCATTCC	alt_5646_new	0	0	0	0	0	0	0	0	0	0
CGGTGGTATCTAACGT	alt_5646_new	0	0	0	0	0	0	0	0	0	0
GTGCAGCTTGACGGAC	alt_5646_new	0	0	0	0	0	0	0	0	0	0
CTGTTTAACGTTCGAT	ref_5646_new	29	51	50	50	51	36	50	53	50	28
TAAATCGAAGTTCCAT	ref_5646_new	10	11	7	7	2	7	10	7	6	4
CTTAGCGTTGGGTATT	alt_5646_new	32	44	30	36	49	19	40	26	47	26
CTCTCTGTTACATCCC	alt_5646_new	0	0	0	0	0	0	0	0	0	0
GGTAATATGTCGCGGC	alt_5646_new	4	12	11	13	10	9	12	7	5	3
GCTCGTACCGACATGA	alt_5646_new	8	67	30	17	62	18	58	20	66	10
GTTCGTTAGCTTTATA	ref_5646_new	149	173	160	158	161	129	196	118	190	122
TTCTAGGTTCGCACAC	alt_5646_new	9	14	30	27	23	10	14	12	13	21
GCCCGTAAACCAAGTG	alt_5646_new	3	4	6	3	4	0	2	2	3	3
ATATCTTGTATCATAT	alt_5646_new	38	70	59	59	68	49	50	56	55	49
TCTTGTCTCAGACCGA	alt_5646_new	4	5	11	14	9	12	15	14	14	8
TCAACTAGCGACGCTT	alt_5646_new	9	5	8	5	12	8	8	9	10	7
TGTAACTTGCTTAGAA	alt_5646_new	0	0	0	0	0	0	0	0	0	0
GTTCACTAGCGGGTAG	alt_5646_new	9	4	4	4	6	6	5	4	2	6
TGGGATATCGAAGAAG	alt_5646_new	0	0	0	0	0	0	0	0	0	0
GGAATCATCCGGTTTA	alt_5646_new	39	50	48	54	59	36	59	45	61	49
TGGGCAGGTTAACTAT	alt_5646_new	0	0	0	0	0	0	0	0	0	0
CAATTCTTTATGCTGC	alt_5646_new	24	19	27	13	17	23	17	13	23	7
CTATTGAGGCAGAGAC	alt_5646_new	51	52	79	67	63	38	65	70	50	42
ATTCCGAGTATTAGAT	alt_5646_new	30	23	42	23	22	12	26	30	29	25
TTGGCTGGGGTATATT	alt_5646_new	0	0	0	0	0	0	0	0	0	0
CATTCGATGGCTTCTG	alt_5646_new	27	31	37	30	38	30	29	41	33	30
CTATCATCGGTGTAGG	alt_5646_new	31	70	40	47	68	37	69	36	65	32
TTGCTTCGTTTGCTCG	alt_5646_new	6	10	22	13	15	12	15	5	12	12
ACTTGTCTCTCCTTTA	alt_5646_new	28	27	39	34	20	25	31	22	36	29
TTTTGACACCGTATGG	alt_5646_new	54	39	67	74	65	59	81	62	72	72
CTGAACGCTTGCGAGC	alt_5646_new	74	81	102	76	93	71	95	65	106	74
CCGTCCGATCCGCACA	alt_5646_new	19	18	24	27	31	21	22	23	26	18
AGTGGGGTTAATAGTT	alt_5646_new	91	105	123	105	134	99	110	95	136	73
CTGTATCCCCATTTGT	alt_5646_new	0	0	0	0	0	0	0	0	0	0
TAGTACATACTCGTCT	alt_5646_new	66	88	47	44	102	30	98	51	90	44
CCAGACCAGATTACCC	alt_5646_new	27	74	48	53	91	30	91	24	101	30
CGGGTAGCCTACGCAG	alt_5646_new	70	77	91	89	81	72	83	82	104	57
CCCGGCCGGCTCCTCT	alt_5646_new	8	11	8	8	13	6	13	9	30	6
GGAAGTCTAGTAAAAT	alt_5646_new	42	74	55	55	56	42	62	47	66	47
TGGTTGTCGGAGTACT	alt_5646_new	6	7	11	11	13	9	10	10	14	9
TTGATTTCCCCGAGAG	alt_5646_new	53	75	55	63	98	57	90	58	82	41
GCCTCCTTGTCCCGAT	alt_5646_new	8	19	11	4	3	18	7	9	15	12
CGTGAATCTATTTTTC	alt_5646_new	23	27	37	25	28	16	34	28	29	33
TAGTATGAGTTGTAGC	alt_5646_new	0	0	0	0	0	0	0	0	0	0
TCTGATGCTTCATCAC	alt_5646_new	4	5	3	2	6	6	3	5	1	3
TACTTCTATCATACGT	alt_5646_new	94	135	117	100	124	68	152	86	134	78
TAGATTTATTCGATAC	alt_5646_new	22	18	26	16	24	23	28	9	18	19
CATAGTGTTCTTGGCG	alt_5646_new	0	0	0	0	0	0	0	0	0	0
TACACGGGGCTAGCTC	alt_5646_new	48	42	60	37	60	47	52	46	35	31
TTTAACCGTACTGCAG	alt_5646_new	0	4	4	5	2	3	3	3	5	1
GAGGTAGTACCGACCA	alt_5646_new	6	5	7	7	22	3	4	6	12	1
CAGAGCGTTGGGCGCC	alt_5646_new	0	0	0	0	0	0	0	0	0	0
GTCTACATCTAATGAG	alt_5646_new	54	85	97	76	87	76	73	45	84	47
GCTTGCCGTTAATCAT	alt_5646_new	28	53	24	29	39	22	47	26	45	28
ATATATAGCGCAGGTA	alt_5646_new	55	89	64	62	74	71	70	53	103	48
TACCAGATAGGACCGA	alt_5646_new	0	0	0	0	0	0	0	0	0	0
ACGGCAACGGAGTTGT	alt_5646_new	0	0	0	0	0	0	0	0	0	0
GGACTCGTTCAGAATT	alt_5646_new	22	26	19	16	15	14	26	18	23	19
CCTTAGCGTCAATGGC	alt_5646_new	8	8	7	8	6	4	3	5	7	7
GCGCCTACGTCCCGCG	alt_5646_new	0	0	0	0	0	0	0	0	0	0
TGCCCACGGATCCAAA	alt_5646_new	15	16	13	14	11	9	17	8	19	18
GATAACGATCGGCCAT	alt_5646_new	3	7	9	10	7	11	11	7	5	5
CGGATAGTGATGTCGG	ref_5646_new	95	99	129	90	106	93	96	101	88	87
GAGTCGGAGCTCGGCA	alt_5646_new	7	9	6	3	5	2	2	4	7	7
TCCGGGGACTGTTTGT	alt_5646_new	61	69	63	69	90	55	95	35	99	51
CCGGCAAATCGACGCA	alt_5646_new	6	56	10	5	50	2	46	2	47	3
CACCGCTTGTTATGAT	alt_5646_new	20	35	22	27	25	22	30	19	29	21
AACCGCAAGTAATCTG	alt_5261_fdr	32	32	38	36	38	25	39	27	33	32
CAATCTTGCTCATCTT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GGATAGGAGCCCTAGC	alt_5261_fdr	2	4	2	9	8	3	1	4	3	4
AACGGCCCGGCGTGAC	alt_5261_fdr	2	0	1	2	0	0	0	2	2	2
TAGATATGGGTCCTCT	alt_5261_fdr	28	19	17	19	24	17	14	21	17	10
ATATCGAGCGTTAGTA	alt_5261_fdr	23	41	29	24	50	15	53	13	56	17
GGTTTTTTGTTTTCTT	alt_5261_fdr	7	1	5	5	7	1	7	7	3	7
TTGCCATCACCAAAAC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCTTTTCTAGTGT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
AGAGTTTGAATGCAAA	alt_5261_fdr	35	53	63	50	41	35	66	31	61	41
TCGATGGGATTTGCCG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGCGCCGTACAAT	alt_5261_fdr	6	31	15	16	23	11	30	13	38	7
CCGAGATCCGCATGGC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATCAATTGTTTATACG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGCTCCGGATGGA	alt_5261_fdr	12	24	15	14	12	10	21	16	17	13
CATGTCGGTTATTTCT	alt_5261_fdr	26	25	27	20	25	26	23	19	29	24
AGTGTAAACGTGGTGT	alt_5261_fdr	9	5	12	8	7	8	12	13	12	11
GTCTTCGCTCTAAATA	alt_5261_fdr	39	45	57	51	40	44	29	33	28	33
GTTGCGTTCGTTAATC	alt_5261_fdr	29	29	34	25	27	16	32	25	27	24
GTTGTGCCCGTCTCTC	alt_5261_fdr	3	1	0	1	0	0	3	1	0	1
GCGCTCCACCCTCTAG	alt_5261_fdr	27	43	36	26	36	24	44	32	39	16
TGACAAAAATAATAAA	alt_5261_fdr	27	22	39	36	33	35	29	34	40	58
AGCGGTTCCAGGAATA	alt_5261_fdr	37	49	48	34	55	48	55	50	63	36
TTATGACCTTGGGAGC	alt_5261_fdr	5	6	2	6	5	3	7	9	6	5
CCTCAGAATGGCGTTT	alt_5261_fdr	91	77	109	93	100	54	94	82	75	84
CTGGTACTGTCCCTAA	alt_5261_fdr	2	5	3	3	6	1	3	3	3	1
TTCCTCTGTGTATCTC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGAATAACATAAAGAA	alt_5261_fdr	21	29	23	27	32	27	30	17	36	25
CACCCGAGTACGGCGC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGTGTTGTTCTGG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCCGTCAATATAC	alt_5261_fdr	4	10	9	9	6	6	6	5	12	7
CGGTATGTGGTTTTCA	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACATCCGAATCATTAC	alt_5261_fdr	39	44	35	43	30	40	66	39	46	32
CGAGGCCTAAAACCGC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTGACAAGATGAT	alt_5261_fdr	26	35	28	21	32	28	19	22	36	19
TCACATTTGGTTAAGT	alt_5261_fdr	10	15	6	2	13	7	17	10	13	5
GCGAAACTCTTTAGTG	alt_5261_fdr	27	26	20	23	31	16	21	23	29	25
TCATGTCTAATATGCG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTAGTGGTTGTCAGGT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCAGTTATTTGCT	alt_5261_fdr	2	0	1	2	6	5	3	3	3	2
CTTTCACAAGCTTATT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGATCTCCCCTGG	alt_5261_fdr	8	14	9	13	29	12	13	7	26	4
CAATGACGAGCCTTAA	alt_5261_fdr	3	6	5	2	5	4	5	6	2	6
GCCATGCCGATATCAG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCGGTCGGGCTTC	alt_5261_fdr	62	56	57	45	64	45	57	48	56	54
TATCGGTTCTGCACTT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGACCTTCTCCAC	alt_5261_fdr	80	75	89	80	69	52	72	50	86	56
CCAGGTCGAGGGGTTT	alt_5261_fdr	13	11	6	15	10	18	14	12	12	3
AAATTGCGTCTTGTTT	alt_5261_fdr	7	14	13	10	11	8	16	16	5	9
TGGCTCCTTTGATCGC	alt_5261_fdr	13	21	23	15	28	24	23	10	14	8
TAGCCTTGCTCGAGTG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CACCTCAAATAGGTCT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TCAATGATCAGGCAAG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTAATTTATTGATCGT	alt_5261_fdr	28	31	46	36	43	35	40	29	49	27
CAACTTACTGTCGCTA	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCTACTCGCGCCA	alt_5261_fdr	22	18	26	23	23	20	23	16	26	13
TCGCTTACTATACATC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTATCATTATTATATT	alt_5261_fdr	16	15	9	15	12	15	14	12	20	14
TATTCATGCAGGTAAC	alt_5261_fdr	17	25	16	8	18	9	13	15	15	19
TCAATTATCTGTGTTA	alt_5261_fdr	23	22	32	22	24	12	25	21	22	18
GAGGGTACTGGTTAAG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGGTACTGCGTGTTTT	alt_5261_fdr	25	15	30	17	24	13	32	8	24	22
TTCTTTTCAGGAATTG	alt_5261_fdr	7	12	8	15	10	9	3	6	12	9
GATCACTCTCGCGTAG	alt_5261_fdr	1	2	1	0	6	1	3	4	2	2
AGTCAACTCGTCATGC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CGATGTATGCCTAGAA	alt_5261_fdr	25	19	16	6	26	15	28	4	18	20
GCCCATGCGCGCTCTG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCGGTGTCTTTG	alt_5261_fdr	11	32	25	12	15	17	22	14	29	16
CGACAGCTCTGCTTCA	alt_5261_fdr	25	31	48	29	37	20	40	30	32	27
CCAGCGCTCCGGGCAA	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCGTCCGTTATCG	alt_5261_fdr	15	14	22	15	17	17	24	10	21	16
ACGTAATTTGCATTAT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
AATCCCAATTTAATAC	alt_5261_fdr	39	50	41	39	62	30	55	52	54	42
GTTTCATTTTATCGCG	alt_5261_fdr	34	23	36	42	33	26	37	29	51	27
GCTTTTATTGCAACTA	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTTGAGTAAAGTG	alt_5261_fdr	29	47	29	23	35	23	33	19	34	25
GGAGTCCTTGATGTGT	alt_5261_fdr	49	54	58	31	54	54	46	61	55	45
CTAGTGTGCTTTCCCG	alt_5261_fdr	11	24	19	11	16	8	17	7	10	13
CCCCTTCTTAACGCTT	alt_5261_fdr	88	66	94	94	88	92	110	70	111	83
CGTTCCTGTTGCCTCG	alt_5261_fdr	16	29	30	19	51	12	37	11	36	17
GTCCTCCATCGTGTAC	alt_5261_fdr	4	6	10	10	14	12	14	6	8	1
GCTTCTACAGGCGTAT	alt_5261_fdr	4	7	4	4	5	5	5	5	6	5
GCAGCGGCCCTCCCAC	alt_5261_fdr	9	11	7	2	3	2	9	8	9	2
CCATGCCGTGGTTAGA	alt_5261_fdr	3	4	1	1	6	2	6	4	3	3
CCGTTTCACGCAGAAC	alt_5261_fdr	0	5	6	2	2	1	5	1	3	3
AGCTGCAGGATCACTT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTTAAAGGAGTGG	alt_5261_fdr	18	25	14	17	16	26	17	16	16	13
CGCCCAACTCTGGGTT	alt_5261_fdr	63	69	69	50	54	57	70	60	70	53
CATACGGGGACTGTTC	alt_5261_fdr	33	50	41	37	34	35	50	43	62	30
GTCGGTACGTCGGACT	alt_5261_fdr	78	132	98	103	131	85	120	81	116	69
GCCCGTCAGCTACTAG	alt_5261_fdr	4	2	4	7	3	7	9	4	4	9
ACTTTACGTGGCTCGG	alt_5261_fdr	2	1	0	1	1	4	3	3	4	2
ATCTCTTACTATAATC	alt_5261_fdr	4	0	6	3	9	3	0	5	1	5
CCCTGATGAATTGGCT	alt_5261_fdr	99	124	147	132	163	111	131	97	115	106
TCCGCGTTAGTGTAAG	alt_5261_fdr	24	45	35	23	27	23	38	31	40	22
CTGATATGGTGGACTT	alt_5261_fdr	5	10	11	6	4	7	6	8	10	2
ACGAGATCGCTGGGGT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCAAGACAACCAT	alt_5261_fdr	8	15	12	7	9	7	12	5	10	5
CGATGACCGGGTCATT	alt_5261_fdr	13	21	19	16	25	18	16	19	21	10
TTCCGCTGTATGTCCG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GGCACGTGTCATGCGA	alt_5261_fdr	165	217	222	186	238	150	280	177	215	155
GGACGTCTCGTATTTG	alt_5261_fdr	14	27	23	27	36	21	32	13	28	26
TTCTTCTTTTTAGACT	alt_5261_fdr	4	0	5	6	3	7	10	4	3	6
CTCTTCACAGTCCTCG	alt_5261_fdr	3	1	9	3	9	4	10	5	9	3
TACCTGTTAGTCCCCC	alt_5261_fdr	62	69	85	63	98	63	101	63	93	62
TCGCATACGGCAACTG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCTTCGGTTAGAT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTGAAAGCCCACC	alt_5261_fdr	32	28	36	27	22	22	23	20	40	27
GGTCGGAGACCGTCTA	alt_5261_fdr	23	27	28	23	36	26	31	36	33	23
CGGCCGATAAATTCTT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGTAGCTTCGCGC	alt_5261_fdr	54	36	49	34	54	50	54	43	45	40
ATCGCGTGTAGTAAAT	alt_5261_fdr	18	19	16	24	13	12	12	11	22	16
AATGTCCTCGGTTCTA	alt_5261_fdr	56	44	63	45	47	38	52	37	46	45
CTTAGCTCCGGCTCTA	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TATAAACCCGTTCATA	alt_5261_fdr	8	9	4	6	9	6	4	4	8	2
GTCATCACATGCTTCC	alt_5261_fdr	22	17	32	13	37	16	33	22	25	19
CCGCTAACGTCTCAGA	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCACGGGCTACCT	alt_5261_fdr	9	27	23	18	19	21	18	12	19	15
TTTTAAAAAGGCTCTG	alt_5261_fdr	9	15	17	9	11	3	6	9	12	12
CGTCCGGGCTGGGGTG	alt_5261_fdr	4	19	10	7	17	11	8	9	12	10
AGGCGTACCCCACATC	alt_5261_fdr	29	21	25	20	27	21	24	14	28	21
CATGAACTTGGTGGCT	alt_5261_fdr	52	42	40	49	41	41	54	49	61	41
TTACTTTCCTGCCCAA	alt_5261_fdr	13	8	12	8	10	8	9	8	12	12
AAACCCCCGCTTCCCC	alt_5261_fdr	15	11	13	8	16	7	12	12	15	10
ATTGCCAGTGGTATCA	alt_5261_fdr	11	7	14	13	16	19	19	19	21	21
GGAAAGATGTGGATTA	alt_5261_fdr	23	25	23	28	24	31	31	11	28	15
GCCGTTCATGTTTTAC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTGCGTCTTCTGGCTT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
AACAGCACTACATTGA	alt_5261_fdr	23	13	14	18	23	17	32	13	23	7
GCATTACTTGTGGGTA	alt_5261_fdr	3	3	5	1	4	5	4	6	4	2
ATCTGTTGCGTTTGGT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GCTAAATTTCTATTAA	alt_5261_fdr	4	3	6	1	2	4	1	4	9	11
ATACTAATCAGGGCAT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTAAGTGTGTACC	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCTGACCTGTTAT	alt_5261_fdr	22	27	32	23	36	26	34	19	38	24
GAGATTCATATCTTCC	alt_5261_fdr	26	22	28	28	30	18	38	19	23	19
ATCACTCTTAATATAT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGGAAGAGCCTCTCCA	alt_5261_fdr	117	109	127	121	150	129	149	104	167	96
ATAACACTACGTTTCT	alt_5261_fdr	5	13	11	11	8	6	8	11	5	4
CTTAGGTCGGGGGCTG	alt_5261_fdr	12	14	3	11	12	10	12	8	14	4
CTTCGACTGGATATGG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CACGTTCTTCGCGGCG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GGCTATCACCGGTAGC	alt_5261_fdr	9	9	6	11	13	13	7	3	8	5
ACAATATTCACGTGAA	alt_5261_fdr	50	54	63	55	66	45	52	42	54	49
CCTGGATAGACTTCAA	alt_5261_fdr	6	20	17	7	27	11	23	6	22	5
CACAGTCGTATACGCC	alt_5261_fdr	0	1	1	1	1	1	0	0	5	1
CCATGACTTGTTGTCC	alt_5261_fdr	26	41	18	26	25	19	32	21	35	22
TCTAGCGGGATACCTG	alt_5261_fdr	17	14	20	16	17	10	22	13	16	19
ATAGTATATTCCCTAT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTCGATTGATATT	alt_5261_fdr	12	9	16	14	13	7	18	8	18	18
GTGGAAGCTGTGCCAA	alt_5261_fdr	9	17	12	8	16	12	18	7	23	9
ACCTTGGATATGTTGG	alt_5261_fdr	10	25	18	19	16	5	25	10	21	11
GCAATATCCAGGTTGG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CATCCATCTTTCTATG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTCAATTAACTCT	alt_5261_fdr	11	19	25	19	12	13	23	18	20	17
TTTTCGGCTTTCAGAC	alt_5261_fdr	10	15	19	11	23	14	18	6	18	8
TCGTATACACTCCTCT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
GCGATTGCGATTGCGG	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGCGAGCGCTCAT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
TGTATTGTACATCTGG	alt_5261_fdr	31	28	27	17	29	22	50	18	41	20
TTTAAAGTGTCCCTAC	alt_5261_fdr	11	5	5	6	6	3	8	2	11	7
TGCTTTGCTACACATT	alt_5261_fdr	16	31	17	12	46	15	29	18	46	24
GGTACCTCACGTGTCT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGTAGCGGTAAAA	alt_5261_fdr	11	12	12	10	7	9	10	14	23	5
TTCGTGAGAATGTGTT	alt_5261_fdr	57	61	78	50	70	57	63	67	65	48
CCCAAGCTTGGATTCG	alt_5261_fdr	3	6	5	3	4	7	10	0	10	6
CAGAAGTGCAGGCCTT	alt_5261_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGTATTTGAGTTG	alt_5261_fdr	26	50	32	15	42	29	33	22	36	21
GAGTTAGTTTTACGTC	ref_6087_new	10	21	20	19	41	11	26	10	37	14
CCATTAAATGCTATTC	ref_6087_new	13	29	27	7	23	22	25	18	32	10
GGATGACGTGTATTGT	ref_6087_new	24	39	24	19	42	22	46	24	39	19
TATTGGGGTACTCTAC	ref_6087_new	11	41	29	11	37	8	28	15	34	12
GGGGGTCAACGGTCGT	ref_6087_new	0	2	0	0	0	0	0	0	0	0
TAAACTCGTAGACTCT	ref_6087_new	161	362	218	197	360	154	377	166	424	172
CTAAAGAAGATGAGCT	ref_6087_new	9	24	12	11	29	17	32	16	33	10
GCTAGACTGGCGCACG	ref_6087_new	0	0	0	0	0	0	0	0	0	0
GTTTCTGTGTTTGTTA	ref_6087_new	10	11	7	4	14	6	15	5	11	6
ATCGTACACGCACAAC	ref_6087_new	0	0	0	0	0	0	0	0	0	0
CGCGATTCATCTTCCT	ref_6087_new	61	88	74	66	88	56	99	71	108	56
TGCCTATCTACTGCCA	ref_6087_new	10	19	11	13	23	12	21	11	27	10
GTACTCCAATACCCTT	ref_6087_new	19	53	17	24	58	17	43	18	58	24
CGACGGTGCAACCAGG	ref_6087_new	15	27	19	15	39	26	38	14	43	21
AGTTTCTCTCAGGGCT	ref_6087_new	27	32	47	20	52	25	58	22	46	28
TATGAATATTAAGATT	ref_6087_new	2	5	10	11	20	11	13	10	14	7
AGGCACGGTACACCTA	ref_6087_new	117	230	160	141	245	155	218	117	238	116
TGCGTAAGTAGTTAAA	ref_6087_new	5	3	6	4	14	5	10	3	11	5
CACAACGGGTCACGGT	ref_6087_new	24	38	33	33	53	34	44	20	46	15
CTGTCAACATCACGGG	ref_6087_new	2	4	4	1	3	2	4	2	0	1
TATGTCATACGGCCAG	ref_6087_new	54	94	70	54	97	46	113	55	118	54
CGCACCTAGTGTCCCT	ref_6087_new	2	4	0	3	5	0	6	7	8	5
CATGTCGATGTTCGAG	ref_6087_new	13	20	19	14	17	11	15	12	15	10
AAGGAGTTCATACTTT	ref_6087_new	72	99	69	46	110	56	84	61	116	58
GCCATTGTACGGCGAT	ref_6087_new	0	0	0	0	0	0	0	0	0	0
TGCCGGGTATGAGTCA	ref_6087_new	11	31	16	8	18	5	17	14	16	8
ATTCCGTGCCGAACGG	ref_6087_new	53	104	63	49	107	54	109	52	125	41
CCCGAACTTGCCGGCA	ref_6087_new	14	51	22	20	47	12	58	21	48	15
CCGCAGGATCAAACTC	ref_6087_new	9	14	3	3	18	7	20	4	17	3
TCAGCTACTGCTGGAG	ref_6087_new	14	32	25	30	40	15	54	12	34	17
TATTACCATGACTCCG	ref_6087_new	4	7	2	7	5	4	5	6	10	5
GCGGTCGCTGAGCAGT	ref_6087_new	13	39	26	11	55	18	56	12	70	8
TCCCGGGCTTTAAGTT	ref_6087_new	9	16	8	5	24	10	15	8	12	4
ATATCATGATGACAGG	ref_6087_new	5	15	7	4	3	6	7	4	9	3
TTCTCTCTTGGTGCTT	ref_6087_new	0	0	0	0	0	0	0	0	0	0
CCATCTGCATAGGGTT	alt_6087_new	10	25	15	4	23	9	23	14	16	8
GGGACCGCGACAGGTG	ref_6087_new	20	35	28	22	53	20	34	16	43	17
TGAGCCGTTGGGCCCG	ref_6087_new	0	0	0	0	0	0	0	0	0	0
GTAGGCTTGTTAAAGT	ref_6087_new	54	76	45	41	83	51	77	44	77	43
GCGAATGGTTTTATGA	ref_6087_new	20	34	31	27	43	16	33	20	46	14
TCAGGTCTTCCTCCTT	ref_6087_new	2	3	5	0	1	4	8	0	6	2
TGATAACTTGTTTCAC	ref_6087_new	2	6	2	1	4	7	13	1	6	0
AAGCTGGGTTCGGAAA	ref_6087_new	11	25	20	13	29	14	22	16	23	13
CTATTTTTTGCAATAC	ref_6087_new	15	37	37	14	42	36	51	19	44	20
TGGATTTTAGCTACAC	ref_6087_new	0	0	0	0	0	0	0	0	0	0
ATGGGATGTAGAGGCC	ref_6087_new	3	22	10	10	12	10	10	10	14	11
GATCTATCCTGATTGG	alt_6087_new	47	101	67	61	104	60	109	57	120	58
TATGGCGGAATACCTA	ref_6087_new	16	32	20	22	50	17	30	13	28	21
ACGCGACAGACTCTAT	ref_6087_new	0	0	0	0	0	0	0	0	0	0
TCCCTGGAGAAACCGA	ref_6087_new	21	28	30	18	20	10	28	20	21	13
ATACGAGCAATTTTCT	ref_6087_new	14	23	26	12	23	16	36	18	20	18
CTTGGGTCGGTGATTG	ref_6087_new	28	40	35	20	67	20	75	23	64	13
GTGATCTCCTGTGCTG	ref_6087_new	4	12	7	4	9	8	16	1	15	5
ATCTATTGGTGTTTAC	ref_6087_new	14	37	24	14	39	24	36	15	34	16
CTGCTCCCTATTCTCC	ref_6087_new	0	0	0	0	0	0	0	0	0	0
ATGTGGAGCACTACCA	ref_6087_new	34	40	26	29	45	22	52	18	49	19
TGATATTAGAGTGTCA	ref_6087_new	33	63	36	20	56	33	65	29	70	33
CTGACGCCTAGATACA	ref_6087_new	0	0	0	0	0	0	0	0	0	0
ATTAGCGTGACAAAGT	ref_6087_new	21	38	22	15	44	19	30	15	35	13
CGTAGTCGTGTTTTAA	ref_6087_new	0	0	0	0	0	0	0	0	0	0
AGTCTGTTCGCCGTCT	ref_6087_new	17	31	17	11	40	12	34	13	33	18
TGCAGGATTTTTTGGG	ref_6087_new	0	0	0	0	0	0	0	0	0	0
TTTCCTAGCAACGTAG	ref_6087_new	8	7	6	3	11	4	12	3	10	3
TTAATGCTTTACGAAT	ref_6087_new	21	35	20	15	50	27	50	30	44	22
CGTCTGCCTCTGAGTG	ref_6087_new	0	0	0	0	0	0	0	0	0	0
ATAATTGATTTTTTGT	ref_6087_new	9	26	12	7	21	8	27	18	27	9
AAGTCCTTCCCCAATT	ref_6087_new	10	15	9	4	15	1	7	7	13	1
GACTAGCTCGGTCCCC	ref_6087_new	0	0	0	0	0	0	0	0	0	0
TATTAATAATGATGTT	ref_6087_new	15	17	5	8	20	12	24	10	13	7
TCTCGACATGCGCGCT	ref_6087_new	27	72	44	23	70	18	51	28	45	25
GCTTCTCAATGAAGGT	ref_6087_new	59	112	93	67	147	62	106	71	152	64
CGCGCGAATATTATGA	ref_6087_new	35	68	22	17	59	29	69	32	70	14
AGTCCTGGTCGTCCGC	ref_6087_new	5	7	3	3	10	1	11	6	17	2
CATGTTCGCAGGGGGT	ref_6013_new	2	14	9	11	9	8	16	4	9	11
GGCGCTCACTTCCAAT	ref_6013_new	51	82	69	45	98	67	104	51	109	53
TGGGTATACGTTACAG	ref_6013_new	36	67	59	37	74	29	73	46	81	40
CATATCGGGAATATCG	ref_6013_new	26	72	34	33	72	30	53	39	63	25
TCGTCATTGCACCCGC	ref_6013_new	0	1	0	0	1	1	2	0	0	0
TTGGCACAAACATCCC	ref_6013_new	0	0	0	0	0	0	0	0	0	0
ACACGGTAATTGACAA	ref_6013_new	0	0	0	0	0	0	0	0	0	0
GATCCCAAGCAAAGCC	ref_6013_new	30	57	48	44	61	42	52	41	57	36
GACACCCTCCCCACCA	ref_6013_new	9	20	18	16	18	19	21	10	33	14
TATTACCAGCACGTTT	ref_6013_new	6	7	1	3	6	4	8	4	6	7
ATCTGACAGCTCGCTG	ref_6013_new	28	70	43	38	76	28	100	41	88	38
GTGAATTCAACGGAAT	ref_6013_new	19	29	18	25	48	19	32	14	32	22
AATTCGGGGTTTGCAT	ref_6013_new	25	55	20	34	65	25	49	22	70	18
GCATGCGCAGTACGAC	ref_6013_new	2	0	0	0	0	1	0	1	0	3
TCAATGACTCTATTTT	ref_6013_new	28	72	43	33	59	41	72	24	76	29
TGAGTTATTGTCGAAA	ref_6013_new	0	0	0	0	0	0	0	0	0	0
TATCCTGTTCACTGTG	ref_6013_new	0	0	0	0	0	0	0	0	0	0
ATTTTGCCGACTGATC	ref_6013_new	60	87	57	39	109	38	92	52	113	41
TAACGATTTTCACGCC	ref_6013_new	10	26	18	14	31	9	30	14	32	14
ACCCGCCTGAAATATA	ref_6013_new	15	34	21	13	35	22	46	16	42	16
AATAAGTCAATGTACG	ref_6013_new	71	149	77	64	139	62	154	57	159	64
GTACATGCACATCAAC	ref_6013_new	17	39	19	18	27	15	33	13	35	9
AACTGTTAGAATCGTG	ref_6013_new	274	490	313	236	486	266	499	227	548	239
TACGTGCTATTGGTCT	ref_6013_new	9	9	5	8	11	7	17	2	17	5
TTTGAAATTAGGTCAT	ref_6013_new	11	15	19	14	13	9	21	8	18	8
CACCGTGTCGCTTACG	ref_6013_new	7	22	11	20	24	16	32	4	21	12
TCTAGCCTTACCATGT	ref_6013_new	4	26	12	10	23	10	25	12	20	3
TACATCGGCTTAGCCT	ref_6013_new	34	34	29	22	44	25	49	34	54	27
TAGGTGACCAGTCTGA	ref_6013_new	0	0	0	0	0	0	0	0	0	0
GCTTCCAATGTCACTT	ref_6013_new	0	1	0	0	2	0	0	0	4	0
GCATTGTCAAAAAATC	ref_6013_new	5	13	7	1	14	2	2	4	12	3
TCAATATTTTGTTCTA	ref_6013_new	0	0	0	0	0	0	0	0	0	0
CTTATCTTATCATACG	ref_6013_new	36	49	42	33	62	38	65	26	66	43
GATCCAATTTAGTGGA	ref_6013_new	0	0	0	0	0	0	0	0	0	0
CCATTAGCCGCCATCT	ref_6013_new	4	7	3	2	8	5	3	2	3	2
CATGGTGAGGAACACC	ref_6013_new	7	13	9	8	10	6	13	2	7	6
ATGGACATTTTGTTGA	ref_6013_new	4	16	19	9	15	6	16	13	16	11
GCGTGTGGTTTCATTC	ref_6013_new	0	0	0	0	0	0	0	0	0	0
GCGTATCATTTTGCTC	ref_6013_new	21	43	28	26	55	24	45	25	41	12
TGCCGAGCTTTCTTTA	ref_6013_new	3	9	2	1	4	3	5	3	1	4
AATTTAGGTATCTCTA	ref_6013_new	17	19	26	20	20	17	30	24	29	13
ACAAGTGCCCACTATT	ref_6013_new	17	28	19	14	43	19	32	19	37	14
GTCATGTCGTGCATTT	ref_6013_new	0	0	0	0	0	0	0	0	0	0
ATTGTACCAGGTTACC	ref_6013_new	59	104	69	59	111	58	105	45	118	38
CTACGAAGGCTGAGCG	ref_6013_new	0	0	0	0	0	0	0	0	0	0
CATAGGGCTCAGTCGT	ref_6013_new	5	11	4	3	11	4	9	4	8	3
TGGAACTGTATTGCAG	ref_6013_new	5	4	4	6	3	1	4	1	5	3
GTAGTTTGTCGGTGAT	ref_6013_new	3	12	1	5	7	4	14	3	7	7
TTTATAGCGTAGACTA	alt_5890_new	54	58	67	76	55	44	69	46	52	62
GGTGAGTGAGAGCGTT	alt_5890_new	88	101	104	97	73	103	89	79	104	86
GCTGACTTTACCAAGG	alt_5890_new	199	206	265	223	210	203	209	205	223	217
TGTTTCAACCTTTTCT	alt_5890_new	96	69	108	74	86	82	99	77	104	77
TTGTCACTGTAAGTCT	alt_5890_new	0	0	0	0	0	0	0	0	0	0
GTGATCTAATATGGGG	alt_5890_new	95	73	100	75	64	102	85	88	72	78
CTTTGTAGCCGAGGGA	alt_5890_new	0	0	0	0	0	0	0	0	0	0
TTCTTTACCGCCTTGC	alt_5890_new	24	15	30	14	22	20	22	24	21	23
TTCTGGCGAAGTCTTT	alt_5890_new	21	25	35	25	24	26	35	20	22	18
CCACTTTGTGTAGAGT	alt_5890_new	71	69	93	80	78	75	87	64	92	83
GAACGCCTACCCGTTG	alt_5890_new	0	0	0	0	0	0	0	0	0	0
CGGTTGCCATATATTT	alt_5890_new	29	25	39	24	27	38	22	27	19	38
TACTTTAGGTACGTTC	alt_5890_new	229	197	254	208	216	179	205	202	213	198
TGCTTAATCATTTCAC	alt_5890_new	17	11	13	5	11	13	13	6	15	8
CCGTGTAATTCGTGCC	alt_5890_new	18	20	36	17	21	22	21	21	26	7
TCTTAACAGGAGCCTT	alt_5890_new	27	28	30	26	17	25	21	16	36	32
TATCGTACTTGTAATG	alt_5890_new	0	0	0	0	0	0	0	0	0	0
TTTCTGGCTAGTGTTT	alt_5890_new	65	61	68	67	76	56	59	64	80	56
TGCATCGCGTTACGTC	alt_5890_new	93	69	109	95	106	85	83	90	89	83
AAGAATCGTGCCTCTT	alt_5890_new	55	52	64	45	57	60	59	53	54	61
CTATATCTGTGTCGAA	alt_5890_new	21	38	35	39	39	33	35	40	40	29
CAGTGTCCGTGGGCAA	alt_5890_new	27	45	40	24	31	37	35	28	45	38
TTCATCGTCGGGTGCA	alt_5890_new	118	105	141	91	108	94	113	102	126	112
TGTAGACCCGGTCGTT	alt_5890_new	33	26	44	34	23	24	35	31	27	27
GCAGGAAAATATGATG	alt_5890_new	22	16	25	36	24	22	23	20	30	24
TAATGAAGTGGTGTAA	alt_5890_new	36	38	34	34	25	31	27	28	35	29
ACCTACTGTCAATTGC	alt_5316_reverse	5	6	0	1	5	3	3	4	2	6
CCTCTCGGCCATTTTT	alt_5316_reverse	38	45	43	24	39	44	33	35	51	34
AGCTCAATACTTGCCT	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
GGCGGCTGAAGATGAT	alt_5316_reverse	157	212	194	143	237	142	217	136	211	177
TAATGGTTGACCCAAC	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGGTTTTTGTTTT	alt_5316_reverse	52	42	64	59	56	47	53	54	56	41
TTAGCCCGCCAACTTC	alt_5316_reverse	23	48	27	31	36	27	53	41	32	30
CACATAATTGATTTAG	alt_5316_reverse	61	102	67	42	79	56	83	68	84	60
TGCATCGTCGTCCCAT	alt_5316_reverse	50	88	62	38	90	46	87	54	79	49
CGCAATTTCCGACCCT	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTCCCGTTCATAT	alt_5316_reverse	24	50	40	32	38	31	51	30	46	33
GTCAGCCGTTTATACA	alt_5316_reverse	2	40	10	12	38	2	26	13	29	1
GGAAGTTTGAATCGGA	alt_5316_reverse	68	86	85	72	97	64	88	63	84	54
TACACATAACTTTGAT	alt_5316_reverse	1	2	1	0	3	5	1	1	2	1
AGGATTCAAAGTCAGT	alt_5316_reverse	20	38	39	26	41	25	32	15	42	13
ATGATCGTCCACCCAC	alt_5316_reverse	23	29	37	17	37	19	23	16	24	16
CTCCCGAGCTTTTGGT	alt_5316_reverse	10	17	16	17	24	19	19	14	32	18
CGTAAGCCGGTAGCCA	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGATTTGTGTTGT	alt_5316_reverse	10	10	3	3	6	7	15	2	5	6
TACAGATTCAATGTAT	alt_5316_reverse	4	3	3	0	4	4	6	1	5	4
TCATCACCTGAACTCC	alt_5316_reverse	2	5	3	4	5	8	14	3	14	5
CGAGACGGTTCTTGTT	alt_5316_reverse	44	36	43	32	51	40	47	37	72	33
TCGCGGCATTCCAAAG	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGTGTACCTGCAG	alt_5316_reverse	22	31	17	6	17	13	28	10	43	14
GTGTGCAATCCCTTTT	alt_5316_reverse	3	10	4	6	14	5	6	11	6	7
CTTTACCATCGTCCAT	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
GATTTTTACAGGGCTT	alt_5316_reverse	25	43	42	24	42	37	42	31	40	34
TGCGTCCTGTAGTTGT	alt_5316_reverse	19	45	30	22	33	25	35	28	23	22
AGATTAAATGACGATG	alt_5316_reverse	18	18	18	15	20	18	18	13	31	12
CCAGGTTTATCGCTAG	alt_5316_reverse	8	26	19	8	26	8	37	12	21	18
GGTTGCATTACGGTAC	alt_5316_reverse	38	42	42	22	48	22	38	30	51	32
GTGAGTTATGCTGACG	alt_5316_reverse	1	4	5	3	7	2	2	4	6	1
TCGCATGATTTATTTC	alt_5316_reverse	10	16	21	11	8	13	23	14	31	15
CAATTTCATGTTTGGA	alt_5316_reverse	12	16	8	11	7	12	7	5	10	5
TATCTAGCCAAGTATC	alt_5316_reverse	3	10	2	2	6	8	12	4	9	6
TTGCCGTGAAATTTTG	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCGTCATTTGCAC	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGAAGGGACATAT	alt_5316_reverse	3	8	0	7	7	2	4	0	7	2
CAGACAATGACGGTTT	alt_5316_reverse	28	23	21	24	35	27	19	22	37	14
AGGGATTATTCAGTAG	alt_5316_reverse	12	21	12	14	19	7	19	14	17	12
TGATTCTGGCGCACTG	alt_5316_reverse	40	50	32	17	54	17	46	30	49	28
GATGCCTTCATTTTTG	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
ATGCACAGTCCGCGAC	alt_5316_reverse	19	39	27	27	31	25	26	16	38	18
CTAAAGCTTTAGCGTG	alt_5316_reverse	4	15	5	9	17	8	4	2	8	5
GAAATCGAAATGTAAC	alt_5316_reverse	26	36	33	34	37	21	45	26	38	26
TGGCTCTCGCGACGTT	alt_5316_reverse	16	13	16	25	36	18	20	15	23	13
CGTACAACGGCCAATG	alt_5316_reverse	14	16	17	9	15	9	10	9	25	10
CTTACGAACGACACCT	alt_5316_reverse	0	0	0	0	1	0	0	0	0	0
GACGGGTGGGTATCTT	alt_5316_reverse	29	33	17	18	33	21	38	18	25	19
AATATTAGTATATGCC	alt_5316_reverse	2	9	7	10	6	5	8	2	12	2
ACCACGCGCACATCAG	alt_5316_reverse	26	44	39	25	45	27	44	16	44	27
CTGCCACTATTCCGGG	alt_5316_reverse	0	1	3	4	2	0	4	2	5	1
TTGATAATAACCTTTG	ref_5316_reverse	29	49	27	20	39	24	48	29	46	17
AGTTACTCTGCAGTAC	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
TTTATAGACCAGAATA	alt_5316_reverse	7	17	14	14	18	12	10	11	15	12
GCGTTCGGTTCACCGT	alt_5316_reverse	13	12	14	7	10	11	9	11	13	15
GACGTCTTGCTTAGTA	alt_5316_reverse	37	42	42	23	59	32	52	26	44	42
GGTCCGGAAGTATACG	alt_5316_reverse	20	28	11	18	20	13	16	12	13	8
TTCTTTGCTGTTTGAT	alt_5316_reverse	93	137	92	96	134	89	137	83	150	93
TTAAGTGTGGGAATGC	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTCTGGTATGATG	alt_5316_reverse	14	19	15	11	29	13	13	11	13	6
ATGTATGTTGCCGGCT	alt_5316_reverse	18	20	16	7	25	11	14	13	21	10
TTGCCTAGTAGTTTAT	alt_5316_reverse	19	38	19	22	40	17	27	18	32	20
ATACGTCCTGGTTCGT	alt_5316_reverse	14	29	19	13	24	14	35	17	21	13
AGGAGTGTTCCAGGAG	alt_5316_reverse	7	6	5	7	12	13	9	6	15	9
ACTGTCCCCCCACAGG	alt_5316_reverse	38	68	38	39	62	47	60	39	62	41
GGTACTTTTGTCTTTT	alt_5316_reverse	47	89	61	34	85	39	83	49	79	45
AAAAGGTACGCGGCCG	alt_5316_reverse	0	5	1	5	1	3	4	4	3	3
TTTTTTGTAGAAACCC	alt_5316_reverse	21	35	29	24	26	29	36	20	49	24
TTTCTGTGCGAGGTTA	alt_5316_reverse	39	57	47	44	73	39	80	45	68	29
GCACGTTCTTTTGGAG	alt_5316_reverse	62	99	56	70	95	51	114	61	96	55
ACGTCTGTCATTGGTA	alt_5316_reverse	9	12	13	7	18	6	17	8	18	7
CACGCAAACTTTTTTA	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
GGGGACCCCAATCGTT	alt_5316_reverse	8	12	14	13	10	19	12	9	16	12
TAATTTGGTCCAGAAC	alt_5316_reverse	9	4	6	7	10	1	5	2	3	2
TCGTAATAAGGATACC	alt_5316_reverse	2	9	6	4	6	9	9	4	5	5
CTCGCTTAGACTCCAG	alt_5316_reverse	0	1	4	2	0	1	5	1	2	4
CGAGGTCTTTAGCACT	alt_5316_reverse	4	16	13	6	6	6	18	4	21	8
CGTTGATAACCACGGG	alt_5316_reverse	15	20	10	11	22	26	29	7	12	9
TATAGGGCTTTTTCGA	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
AAGAAATATGGTCCCC	alt_5316_reverse	1	5	2	0	4	2	1	1	4	1
ATTATATCGAAAGCTG	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTACAGGTCTCGT	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTGCGTCTTTTCG	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTCGATCGCTGAA	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGTCCCCGGGTCA	alt_5316_reverse	21	23	15	15	18	9	26	16	26	18
ATCTACGATTACATCC	alt_5316_reverse	10	9	10	5	6	5	10	7	9	10
TTGGTACATTCAAGTG	alt_5316_reverse	1	1	1	1	4	5	2	0	3	1
GCCCGTCAGAGTTTAG	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCAAGCAGCGATA	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
ACTGGGTATAATACTT	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTATGAAATACTA	alt_5316_reverse	6	5	6	4	8	6	3	5	9	3
CATGGTCCCACGGCCT	alt_5316_reverse	0	0	0	0	0	0	0	0	0	0
CTATAAAGGCTTTATG	alt_5316_reverse	24	33	32	17	47	34	55	26	50	25
ATTATCTTGGTTCACT	alt_5316_reverse	12	7	12	10	15	9	12	6	15	9
TGCTAAGAAAGCCCTC	alt_5316_reverse	32	44	34	38	51	23	52	28	55	31
TCTCTTCGATCTTACT	alt_5316_reverse	4	8	10	6	8	3	7	2	7	6
GATTGGGTGGCCTGAT	alt_5316_reverse	12	17	15	19	23	23	13	7	22	12
TATATCCCCTTCTTTA	alt_5316_reverse	6	9	10	7	12	8	16	11	11	5
TCGTAGCGCAGATACC	alt_5316_reverse	8	7	16	13	21	10	11	9	14	9
CATCAGGGTCATAGAT	ref_5316_reverse	12	29	31	15	22	22	21	26	25	17
CACTTATTAAGGTTAT	alt_5316_reverse	8	19	7	8	11	11	11	10	21	4
TAGCCCGATTGTTTGG	alt_5316_reverse	12	16	10	13	22	12	30	14	22	15
TTGTTTATAGTCTCCT	alt_5316_reverse	16	42	30	27	41	17	39	20	41	24
TGCATATTCGGCGTGT	alt_5316_reverse	19	16	21	20	19	11	25	15	31	21
AACGAGTTTCGATTCG	alt_5316_reverse	10	18	14	11	17	20	18	13	28	6
TGTGCACAATATTTTG	alt_5316_reverse	9	19	12	14	19	8	20	8	16	6
GGGACCTGTTGATTGT	alt_5316_reverse	1	2	5	4	5	2	9	4	7	7
TGTACTTCGATGGGGC	alt_5316_reverse	1	6	6	3	4	2	9	1	2	1
TTATCGTGAAGTGACC	alt_5316_reverse	15	23	11	11	15	10	15	10	26	8
CTTAAGCCTATGGGAT	alt_5316_reverse	10	18	10	13	13	13	19	8	29	10
AGGTTGCATCTAATCT	alt_5316_reverse	8	6	14	10	8	6	5	11	10	10
CGATTTTACATTGATT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
AGCTTTGGCGGAGTCG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
AACCACTTTAAATCGG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CGTAATAGTATTACAT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
ACGGCCGCTAATTAGC	ref_6108_new	6	0	1	0	1	1	3	0	4	3
CTATAGTCGAGCGCCG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GCCTTTAGCGACCCTA	ref_6108_new	10	15	18	8	9	11	16	11	21	5
GGGTTGCGGTTGCAGA	ref_6108_new	6	8	11	10	11	8	6	8	16	8
TTCGGTGGTGCACATC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
AATTTATCGTCGTCGC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
ATAAATCTCGCGTATT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GTTCTGGGAGTCGCAG	ref_6108_new	2	5	5	1	2	0	2	2	5	3
ACCCTGGCCGCTGGTC	ref_6108_new	15	21	8	3	22	8	15	7	26	9
ACAAGATCTACCTCTG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TAATTAATTGGGAGCA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CCCGTATTGCGATAGA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
ATGCTTGTATCAATGG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TAGGGCTAAAACATAC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CCACCTGTAGAAAGTT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
ATCCTAGCCCGATCAA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CCTGTTTTTAAGCGAT	ref_6108_new	3	2	0	0	4	1	1	0	2	2
CCTGACGGAGACTTCG	ref_6108_new	20	5	15	9	3	16	25	11	10	12
CTCACCTTTCGTCGAC	ref_6108_new	5	19	4	6	21	3	16	8	18	4
TTCTGGGGATGGATCG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
AATTCGCTGTATGGGT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TTGTAATCGGGTCCAT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CATTATGCATCATTGA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TCCCGGGACGTGCATT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GAGTCTAGGCAGCCAA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTGCTACGCTT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CTGTATGGGTGTGCGT	ref_6108_new	11	25	25	13	16	11	28	10	15	4
CCTTCCCGTTTCTGGG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TATGTGTCATATTAAG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GTGCGAGGGTGTTTTG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CCGCTTCTACTTAGGG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CAATTTGGTATCTGTG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
ATCAAGCTCCCACACT	ref_6108_new	14	14	8	5	12	9	18	7	13	5
CTTATAAGTCGTGGCT	ref_6108_new	11	7	5	2	6	4	10	2	4	4
TTATTCCTATAGTCGT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GCGGTACGGGTAAACG	ref_6108_new	3	3	4	8	4	3	7	3	3	2
CAGTATGCCCGAAAAC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TCAATGTTCAAGTCCA	ref_6108_new	14	20	15	15	17	20	17	12	14	16
CGTATCTCGTACGAGC	ref_6108_new	24	30	23	25	54	19	41	26	47	26
GGGAGAGGTCGTTCTA	ref_6108_new	6	10	3	6	9	11	6	2	3	6
GCTTGTCTGTCTCCGG	ref_6108_new	0	0	1	0	1	2	0	1	4	0
AGAATCCCTATGGTTT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CTACTCAGCGTCCTTG	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CCCCATATCTATTGTG	ref_6108_new	8	7	5	1	11	2	3	4	8	4
TAAGAGAAGCTCTGCA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GTGAGTGTCATGTAAC	ref_6108_new	7	7	2	5	8	3	4	3	13	0
CCATATTCCGGGCAAA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TTTCTAATTTCTTAGT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GTGTATACGTATGTTA	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CCACTTATTGGGCGGA	ref_6108_new	14	16	13	14	26	15	24	17	31	17
TGCTGATTTACATAGG	ref_6108_new	11	24	17	21	30	19	18	22	21	9
GCTCCTCAGTAGTAAG	ref_6108_new	6	24	20	14	13	12	11	12	18	8
TGTCCTTAACTGAGGC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TGGTGTTGCAAAGTCC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
CGGGGAAATCGCTATC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GATCTTTTCTAAGAAG	ref_6108_new	9	18	17	6	27	9	21	17	18	13
CGGCTCCTACATCTGG	ref_6108_new	1	0	0	0	2	1	0	0	1	0
GCATGTAAGCTACGTC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GGTTTTTCCCCGAATC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
AATATTCATTCTGAAT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
GTGACGCTGCGCTTGT	ref_6108_new	0	0	0	0	0	0	0	0	0	0
TTCTCCGTTTGCCTTG	ref_6108_new	1	1	3	4	2	6	3	1	5	3
CTCACTTAAGGCAACC	ref_6108_new	0	0	0	0	0	0	0	0	0	0
AATTTGGTGCGGGATC	alt_5638_new	61	61	64	79	73	58	62	56	64	58
ATTCGCTCGTATGCCT	alt_5638_new	43	66	71	59	103	45	66	48	85	49
GAGTACCGTAGGATCA	alt_5638_new	14	19	26	10	31	23	17	16	18	17
AGTCAACCCCTTACGT	alt_5638_new	12	6	11	13	12	11	9	5	9	8
CTTGAGCTTGTTTTTG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
TTGTTGTGGAGATAGG	alt_5638_new	13	16	13	22	25	18	18	20	18	10
GGGTCCCACGTACGTT	alt_5638_new	68	92	90	74	77	70	81	66	93	62
CCATTGGCGTCCCCAC	alt_5638_new	6	13	6	12	12	5	17	5	23	16
ACTGCTACGTTACACA	alt_5638_new	0	0	0	0	0	0	0	0	0	0
CATTAGGATCACGATA	alt_5638_new	0	0	0	0	0	0	0	0	0	0
ATAGCTTACGTTTACG	alt_5638_new	61	100	83	74	80	56	105	47	92	79
GTCTTCCCGTAGCTGT	alt_5638_new	11	23	17	25	26	10	20	12	26	20
GCTTTATGCGCGACGG	alt_5638_new	17	14	15	13	19	9	10	17	19	9
TCCGATACGGCCTCAC	alt_5638_new	21	44	44	33	45	30	47	39	60	19
GTGGCGTCTAACCCTG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
TAATGTTCCGTCGCAG	alt_5638_new	19	32	28	29	27	16	23	24	37	25
GTTCTAAAGAATGCCG	alt_5638_new	11	23	21	23	23	7	11	15	19	11
TCTGCTGGAAAGGATT	alt_5638_new	27	41	32	32	30	29	33	13	42	19
CATTCGGAAGCCGTAG	alt_5638_new	13	18	24	8	16	21	17	11	20	14
TGTTTGTGCGTGGAGG	alt_5638_new	20	50	37	32	40	41	29	24	43	31
TCGGAATTTTTTGTCT	alt_5638_new	91	157	150	103	139	110	122	115	128	94
GGTGAGGAGTAGAGCT	alt_5638_new	19	28	21	27	20	23	21	14	27	22
CCCTTGCCATAGCTCG	alt_5638_new	85	111	116	103	140	93	156	85	147	93
CTCTTTCATTTAGCGA	alt_5638_new	0	0	0	0	0	0	0	0	0	0
CGGATTATTGTTAACG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
TTCCTGGGTGTAGTCG	alt_5638_new	42	45	36	32	55	19	32	25	52	30
TTGTCATATCGCCGCG	alt_5638_new	28	34	21	27	45	34	42	30	41	20
TGGTCGTATATAGCAT	alt_5638_new	9	9	9	8	11	4	10	4	6	5
TGTGCAAGTTACTGTG	alt_5638_new	0	2	4	0	0	0	0	1	3	2
AGTTTAGGCTTATTTT	alt_5638_new	40	41	51	35	47	34	50	38	56	27
TAGCATTTCCAATTAA	alt_5638_new	34	47	32	32	38	25	34	25	47	24
TTTTTCGCGTATTCGT	alt_5638_new	0	0	0	0	0	0	0	0	0	0
TTGTGTTGGAACTTTT	alt_5638_new	4	15	7	8	24	17	13	11	22	9
CTTAGCTATGTTGGCC	alt_5638_new	32	22	13	17	13	16	23	17	24	14
ACCATTAAGTTAGTTG	alt_5638_new	51	85	70	74	92	58	95	72	95	45
CTCTTACCTTTCAGTG	alt_5638_new	1	1	1	1	1	1	5	0	3	0
GGGGTGTCTCCTCTGG	alt_5638_new	20	24	19	25	24	14	31	15	21	17
GCGCAGGTATTTTTAC	alt_5638_new	70	82	76	80	89	78	87	54	78	71
CCGCCGTATCCGTTGC	alt_5638_new	4	23	9	11	31	10	32	3	34	5
GGTGACGAGTATCCCA	alt_5638_new	19	28	34	22	34	27	35	21	37	24
TAGGTCCTTTAGGAAA	alt_5638_new	10	5	5	5	7	3	9	4	13	1
ATACACTTTCTACTAA	alt_5638_new	0	0	0	0	0	0	0	0	0	0
GCAGTGAATTATAAAT	alt_5638_new	0	0	0	0	0	0	0	0	0	0
TGAGCGGGTTCTATTC	alt_5638_new	42	55	57	64	65	45	75	30	65	46
GAGGCTCTCAAGTAAG	alt_5638_new	45	76	50	43	72	48	57	52	59	36
CACATATCCAGTATTG	alt_5638_new	10	19	8	13	20	9	7	16	7	11
CAACTTCAATTGCATG	alt_5638_new	19	26	28	13	29	16	32	14	44	21
TCCTGGTGTCCGAAAT	alt_5638_new	4	7	3	4	6	1	6	3	4	4
ACAGTTGTCGTCCTAA	alt_5638_new	27	48	36	36	57	35	71	31	61	38
ATCTCTACTACACTCA	alt_5638_new	0	0	0	0	0	0	0	0	0	0
CTCAGCCTCTGGCGTA	alt_5638_new	0	0	0	0	0	0	0	0	0	0
ATTCGCGTTGTTCTTT	alt_5638_new	36	47	38	39	44	38	43	48	50	36
CTTTCCTGAAGGTTCT	alt_5638_new	44	64	44	53	63	46	45	44	62	43
GTCCTCCCGAATGTTG	alt_5638_new	56	63	60	72	75	41	62	44	55	49
TGTGGCTGTCTAAGGC	alt_5638_new	19	40	26	35	33	21	43	20	36	14
GGCTCTTGTGAAACTC	alt_5638_new	28	56	47	40	53	39	61	36	41	27
CGAATGTTGCTTGAAA	alt_5638_new	0	0	0	0	0	0	0	0	0	0
ACCGGTGAGATATCGA	alt_5638_new	9	15	9	5	17	5	22	4	25	4
TCGTCGTCTTAAGCTC	alt_5638_new	20	18	21	21	30	21	26	27	21	20
TGGTCATCGGTCTGGT	alt_5638_new	24	48	29	14	45	22	53	22	39	18
CTTATTATGATTTCTC	alt_5638_new	38	45	48	46	39	33	44	40	42	19
CTCATTCGATACTCCT	alt_5638_new	99	203	142	111	244	131	242	106	241	97
TAAAGCGTGGTGGGAA	alt_5638_new	45	57	63	35	61	35	59	51	60	39
ATGGTTCAGTGCGAGT	alt_5638_new	127	181	129	95	156	122	189	82	185	95
GCTTATTGAGTAGTAC	alt_5638_new	30	21	31	18	39	19	26	25	42	16
TGAAAGACCGGATTTT	alt_5638_new	8	25	14	10	12	9	14	12	16	5
TGACTCCAAGCTCTTA	alt_5638_new	0	4	3	0	8	2	3	0	6	0
TAAGTGTCAGATCCCG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
AGGGGGTTTATGTTCC	alt_5638_new	33	53	48	38	65	43	42	45	45	33
TGTCAATCGATTACTC	alt_5638_new	0	0	0	0	0	0	0	0	0	0
GCCGATGCTACGTTTC	alt_5638_new	0	0	0	0	0	0	0	0	0	0
TGGGCTCATCACCGGA	alt_5638_new	14	31	30	26	44	21	36	20	29	23
CCTATAGTTGTTGGTT	alt_5638_new	22	35	51	36	39	26	65	21	45	27
CACTTAATGCTGGCCG	alt_5638_new	35	48	57	48	56	33	81	43	46	32
TGGATCAAATGGGTGG	alt_5638_new	50	59	66	52	52	60	72	50	80	53
ACAATGCACCAAACTA	alt_5638_new	23	17	12	17	25	14	17	8	22	11
ACATGGCGCTTGTGTC	alt_5638_new	5	5	14	7	7	9	11	5	9	13
CTCTTCGACTTCCTTG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
GTTTAAGGCGTTTGAG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
TAACTATAACGATACC	alt_5638_new	0	0	0	0	0	0	0	0	0	0
CAACTAGCGTAATTGG	alt_5638_new	121	166	149	97	187	95	171	108	181	112
GACATAATTCTTGGTA	alt_5638_new	138	206	149	154	206	135	176	120	169	125
AGGTAGGTTCTAGTCG	alt_5638_new	9	16	7	9	11	14	10	8	13	8
TCCCAGATTGTGATTC	alt_5638_new	19	25	22	17	42	21	21	21	26	13
TGACTATAATTGTTTG	alt_5638_new	5	12	10	7	8	3	6	5	1	4
AAGCCATGACGGATAA	alt_5638_new	75	99	82	80	100	58	101	48	97	59
TTATTTTCCTCCCATG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
AAGAAGATATACGCCG	alt_5638_new	0	0	0	0	0	0	0	0	0	0
AGTCCTAGAGAGGCGA	ref_6126_new	36	21	47	27	16	32	24	45	34	27
AGCTTGCTCTGCTCGC	ref_6126_new	46	36	75	56	39	54	45	66	46	57
GCTTGCGTCAACAGTT	ref_6126_new	6	6	4	2	4	2	6	4	7	2
TGCCGACTTGAATCCA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ATTTGTATATAGTCTT	ref_6126_new	105	75	125	111	76	125	70	103	86	109
GGTCCAGTCGCGCTTC	ref_6126_new	27	17	36	12	11	22	12	23	15	13
AAGGGTCATTTCCCCC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CTTTTGTCGGTTCTCG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TGGCGCGGACAGAGCT	ref_6126_new	68	43	79	64	39	54	35	79	63	63
GTGAAGCTGTTCTGGC	ref_6126_new	138	80	187	162	78	150	102	124	88	127
GTTCCAATGATGGATG	ref_6126_new	66	32	72	44	24	40	35	49	44	44
TTTTGGTCTTTGTGAC	ref_6126_new	24	12	30	23	16	19	27	19	21	20
ATGCCGGTCTCCTAGT	ref_6126_new	37	44	37	35	36	21	31	29	45	24
GACCCTGTCTACATGC	ref_6126_new	7	14	6	6	14	5	7	6	11	9
AATATGATATCTAGTG	ref_6126_new	4	10	18	14	3	11	8	10	5	21
GTCCAGGCTATTTATG	ref_6126_new	24	20	41	27	13	22	24	26	23	19
ATAAAGCTTTTTACGG	ref_6126_new	29	33	55	38	17	34	31	28	25	16
GAGGACCTATGGACCG	ref_6126_new	142	116	161	182	120	140	125	149	109	147
ATGAATCTATACGTGC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ATTAAGTCCCACGAAA	ref_6126_new	26	20	47	40	13	41	32	32	22	28
GAACTCTAGAGGACAC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CGTAAAGTGGCCTCGT	ref_6126_new	21	16	23	21	15	20	12	18	18	22
TCGCTATTTGTTTCAC	ref_6126_new	13	6	17	12	5	15	7	12	6	13
GCGTTGTCACTTCGCA	ref_6126_new	67	35	53	41	30	43	46	45	35	40
CCTTCCTATTTTCAAT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ACTATATGTACGATGA	ref_6126_new	49	40	82	59	36	54	42	49	44	48
TTATGAGCGAACGAGC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TTTCGGCAATTGCCAG	ref_6126_new	35	28	46	47	31	30	28	39	28	35
GTCGCAACTGTAGCCT	ref_6126_new	1	1	1	7	1	2	5	1	3	0
AACGCCCAGTATGATC	ref_6126_new	32	25	51	56	32	41	30	33	25	37
CTAAACGAAAGTCCGC	ref_6126_new	17	18	28	20	12	22	12	19	8	14
CTTGGCGAACCCTCTT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TTTTGGCTCAATTAGG	ref_6126_new	74	74	104	89	46	70	67	72	59	68
TGGATGATCTATGCTA	ref_6126_new	30	20	32	21	15	27	27	17	20	31
ATGTGTTTTATAAGGC	ref_6126_new	146	74	131	108	103	115	93	114	95	90
ATGCACCGATAGAACC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CGCGCTTGGCAAGTAT	ref_6126_new	19	16	11	12	5	11	9	12	19	5
ATGGAGCTATTTTCTT	ref_6126_new	15	5	9	12	5	12	11	11	6	6
TTGGCATTATTCTATT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TCACCGGGATCACGAT	ref_6126_new	32	30	49	43	21	41	25	40	29	27
TGGCGACATTGAACGA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TCAAAGGTTTCCAACG	ref_6126_new	31	18	35	27	19	28	21	26	24	30
TAGTGTGCAGGCATAT	ref_6126_new	62	35	80	58	43	65	49	65	35	73
CTGGTATGATTTCGTA	ref_6126_new	21	20	28	20	18	12	26	13	25	22
GGTGTTTGCATTGTAG	ref_6126_new	6	3	7	4	6	11	3	4	10	12
AGTCTCTCTATTATAC	ref_6126_new	503	257	657	531	254	490	292	528	285	423
TTTTTGTAAGATCCAG	ref_6126_new	32	30	39	42	20	47	22	34	32	36
TGCGGTGTACTGCTCC	ref_6126_new	28	10	25	33	18	22	20	27	14	20
ATTTTATGATACTTAG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GGGGACTGGACACAAA	ref_6126_new	145	95	155	130	112	135	110	111	117	104
TTGGTAACCTAAAAGC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ATGTCTGGCAATCTTT	ref_6126_new	33	34	50	29	23	28	24	35	27	33
GCTCATCACGTAAACT	ref_6126_new	88	78	101	101	60	88	65	82	50	89
GGAGAGACGTTAGAAC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GGGGCTAATGTAATAC	ref_6126_new	14	13	15	20	7	11	11	7	11	13
CTCCTTTATTTCTACC	ref_6126_new	1	2	0	2	0	0	0	0	1	0
CCGAGAGCGCGCGGGG	ref_6126_new	81	56	102	83	37	74	43	73	58	85
GCATAACCAACAGCTC	ref_6126_new	77	67	81	73	59	82	51	68	60	77
GACTGCCTACAGAGTC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GATTTCACTTTGGTCA	ref_6126_new	22	14	34	22	13	18	24	23	18	22
GCACTATATAGTTTTA	ref_6126_new	10	6	8	14	5	8	5	11	8	9
TCGGGCATCTCCCTGA	ref_6126_new	14	12	18	14	8	13	12	12	8	9
TTTCTCGACATGTAGT	ref_6126_new	30	14	27	28	25	23	14	29	15	19
TTTACCGCCACCGACT	ref_6126_new	40	39	51	36	40	34	30	34	36	37
TTAACCCGAGCCAGTT	ref_6126_new	40	27	36	52	31	47	22	24	23	31
GTCGTCTGTTAGATTT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CAGTTCTCGACCTTTT	ref_6126_new	58	39	66	63	39	53	22	71	33	54
TAGTTTGGGTCCGATA	ref_6126_new	30	18	24	40	17	26	12	29	22	21
GCACTCTTTGGCGTCC	ref_6126_new	25	19	34	34	23	34	29	41	30	35
AAGGCTTTGAGGGAAC	ref_6126_new	3	0	6	1	5	5	0	4	0	3
ACATAGCGGGTAAGAC	ref_6126_new	49	39	60	60	25	48	38	55	39	38
AAGCTTGCTAGGCCAT	ref_6126_new	7	6	5	11	6	7	4	6	4	10
TACTCCCCTGCGCTCC	ref_6126_new	6	27	21	10	40	2	27	9	32	3
TCGCGAGCCCCTGTTT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CTAGCTTTCCTTGCTG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TGTCCTCGGTTACCCA	ref_6126_new	148	119	190	132	101	142	121	122	115	114
TATAACCCGGTGCTAG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TGTCGGCCTGGGTAAC	ref_6126_new	8	10	3	6	6	5	5	4	3	2
ATCGTAGTGCTCCCTG	ref_6126_new	31	35	25	29	34	29	35	21	32	27
AAGGGTCGATCTCGGT	ref_6126_new	9	10	21	15	10	14	11	14	17	10
CCGTTGACTGCACCGT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GATACCTCAAGTTAGG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CCACCACACTCAGGAA	ref_6126_new	1	2	2	0	0	1	0	1	3	1
AACACCGCGCTCTGTG	ref_6126_new	17	43	39	40	39	41	31	32	32	38
GGAGAACTTTTATTGC	ref_6126_new	3	2	8	4	2	2	1	3	6	3
GGTCCGCACAGTTATG	ref_6126_new	40	24	37	48	22	28	34	40	31	36
GCCTTCTCGTCGTCTC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TCGGCGTAAATATTTT	ref_6126_new	0	0	1	0	0	0	0	0	0	0
TGCCTCTATCCAGTCT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TCGTAAAGCAATGCAC	ref_6126_new	50	55	64	57	37	59	25	48	33	54
GGTAGTAAACAGTAAC	ref_6126_new	17	12	13	30	15	27	15	20	8	16
TATGAATATCTCGCTT	ref_6126_new	5	0	2	1	2	4	2	2	2	4
CGCGATCAATTTCAGT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TTCCAAGCAATGGCAT	ref_6126_new	56	45	57	70	34	54	26	46	42	52
TTTCCATGAAAAGATG	ref_6126_new	31	20	45	28	18	33	40	42	34	28
CCTACCAATGTTATCA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CGACCGGAGTCCCTTG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TGCAGCAAACGGCGCG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CTCTACGTGTCTAGTC	ref_6126_new	5	4	4	4	1	4	3	3	4	1
TTGCTCCTTATGATTC	ref_6126_new	0	2	3	0	4	0	2	2	0	1
TTTTTCCATTTTAGTG	ref_6126_new	13	7	10	14	5	9	7	9	6	18
CGTCGTCGCCTTTAGC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TTTCTCAACACGATTC	ref_6126_new	1	1	0	3	2	0	1	1	2	0
CAGCCACCCGAGTAGT	ref_6126_new	0	8	0	2	7	1	7	0	8	1
GAAAGGAGAGTTTACG	ref_6126_new	9	11	14	10	3	9	3	19	11	14
CAAATTTTGCTTTGAA	ref_6126_new	30	20	34	30	24	21	21	26	24	22
AAATGGTGGACTATGT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ATTGGGGTGCGTCTTT	ref_6126_new	9	7	17	17	2	6	8	13	15	9
GCCCTGCCTATGATAA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GCGGGGAATTACATTT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TGAGCCGGTATAACTC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CTGATTTGAGTTGATC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GCACCGTTGGAACTTC	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TCGATCGGTATTAGTA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TTAGGTAAGATGTATT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
AACAGATGGCTCACTA	ref_6126_new	37	37	52	53	44	56	24	54	39	54
TTAAGCTAAGTATTTC	ref_6126_new	13	17	28	20	11	19	11	32	16	15
CTGACCGATTGTCTGA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
GGAGTGCACATGTCTT	ref_6126_new	17	7	14	9	6	5	9	11	9	11
TTGGGTATCGAAAGGA	ref_6126_new	4	5	12	9	6	11	10	8	8	9
GATTAAATTGATTCGT	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CGACACGAGCCGGTAG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ACGACTTCGTCCTAGG	ref_6126_new	22	14	34	25	17	23	17	27	15	12
TCCCGCACGTCTTATG	ref_6126_new	5	3	12	7	4	2	8	6	2	6
CGAACGCATCAGCGAG	ref_6126_new	6	5	6	7	1	4	3	4	5	3
ACCGTCCCGCATTAGG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
AAGCGTACTAATGTAA	ref_6126_new	0	0	0	0	0	0	0	0	0	0
TACTTCTGCCAATGTA	ref_6126_new	21	7	12	14	7	8	13	12	7	12
GCTTGGAATCGTCCGG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
ATCTGATGAGTACTTA	ref_6126_new	9	10	23	13	17	8	14	14	19	18
GATGCTGAATCCTAAG	ref_6126_new	0	0	0	0	0	0	0	0	0	0
CTCAATGGTGTACTCT	alt_5750_new	53	47	44	54	71	39	54	52	59	34
TGTCGTCGGGTCGTCG	alt_5750_new	73	99	93	106	112	84	104	84	112	64
TATCAATGGGCTGGTG	alt_5750_new	0	0	0	0	0	0	0	0	0	0
CCACTAATGCAGTACC	alt_5750_new	19	32	23	21	37	19	34	18	27	18
GTGTTATGCCAAAGTC	alt_5750_new	56	81	71	61	54	56	73	48	68	64
TCATCAGCTAGTACTA	alt_5750_new	0	0	0	0	0	0	0	0	0	0
ATACCGCCCTTTCTTG	alt_5750_new	0	0	0	0	0	0	0	0	0	0
CTTGGTTTGTTTCGCA	alt_5750_new	24	34	28	29	41	21	27	37	32	16
GGGCTTTGTTCTGTAA	alt_5750_new	13	30	13	10	27	11	28	12	15	18
GTATGCTATCGCTACA	alt_5750_new	17	33	23	28	45	28	31	28	50	35
TATTGCGTCTTTCAAC	ref_5750_new	187	273	212	188	273	150	291	166	302	164
ACGCTCTTCACTTTAA	alt_5750_new	4	5	4	2	4	2	10	5	3	1
CGATCTAAGTCCACGG	alt_5750_new	174	231	210	193	208	185	254	195	287	152
ATGAGTTTATCGCTAG	ref_5750_new	25	21	33	29	34	23	25	25	26	15
CCGACCCTCGATGGTG	alt_5750_new	2	14	11	7	6	10	10	7	11	7
GCAGTTTGCCACTAAG	alt_5750_new	148	222	206	162	235	148	220	165	250	145
CCGCGTATCTCGTTAG	alt_5750_new	0	0	0	0	0	0	0	0	0	0
GTATCGATACAACGGT	alt_5750_new	5	14	10	11	11	13	11	8	17	14
AATGGCCCTCCGGCAA	alt_5750_new	29	47	39	41	39	29	31	23	39	32
TTTCATAGTGGAGTAC	alt_5750_new	48	55	35	45	63	38	51	44	58	19
CCCTCGTCATCCTGCT	alt_5750_new	0	0	0	0	0	0	0	0	0	0
TGAATCTCTGTTTAGT	alt_5750_new	11	17	10	10	13	5	19	5	22	12
ATTAGGACCACTCAAT	alt_5750_new	23	27	27	21	36	24	30	23	30	20
GTAGGCCGTTCTAATA	alt_5750_new	54	49	49	45	58	48	73	39	60	34
CACGGATAACATTTGG	alt_5750_new	27	41	30	28	28	28	42	22	43	13
GTGTCGAACCTTGGTC	ref_5750_new	0	0	0	0	0	0	0	0	0	0
GGATGTATATGCAACT	alt_5750_new	6	12	10	11	14	17	5	7	14	7
TTAGATAAGTGAGGAA	alt_5750_new	27	29	34	46	35	27	41	31	57	27
CTTCGCGTGTCTTCCA	alt_5750_new	29	30	42	26	34	38	34	33	28	25
TACCGTGTGTAAATCG	alt_5750_new	0	0	0	0	0	0	0	0	0	0
AAAAGTTCAGTAAGTT	alt_5750_new	0	0	0	0	0	0	0	0	0	0
ACTTCGGCTCTGAGTG	alt_5750_new	6	7	17	9	13	9	9	5	9	7
TTTGGCATGCGCCCTA	ref_5750_new	20	7	6	8	10	11	12	10	27	9
GTCACCAGGAAATATT	alt_5750_new	30	108	41	38	119	42	110	34	110	34
ATTTTGGCAGATAGAA	alt_5750_new	55	68	60	41	58	48	72	49	59	40
GTTATTGCGGCAAAAC	alt_5750_new	10	11	9	9	7	4	11	3	12	11
GGCCAAGCAAAGACGT	ref_5750_new	112	131	131	119	155	113	138	101	133	93
GAGTGCATTTGGAAAC	alt_5750_new	29	58	30	40	55	34	70	23	61	25
AAGGCAGGGCATACAG	alt_5750_new	35	52	45	36	54	30	51	39	57	31
TCCAGAAGCAAACATC	alt_5750_new	60	110	78	83	100	78	107	66	110	62
CACGGCTATCCGCTTG	alt_5750_new	11	14	10	3	17	10	15	15	19	12
TTCAGCGTACGGCGCG	alt_5750_new	2	12	4	7	12	10	18	6	7	2
ACTCTTTATTTTCTCC	alt_5750_new	47	44	71	59	52	49	60	53	53	42
GTAAGTCCCCGATTCA	alt_5750_new	26	37	34	31	44	28	32	29	60	25
GTTTTATAGAAGTGCG	alt_5750_new	5	3	3	6	6	4	6	8	3	8
TCACCGGAGCCTGTGG	alt_5750_new	51	108	82	50	113	44	113	53	110	62
GGCCTCTCTTGACGGA	alt_5750_new	15	13	22	19	23	18	22	20	16	20
ACTGTCAGAGGGAACC	alt_5750_new	14	37	21	25	22	18	21	15	22	20
TGATTAAGCCCTCTAC	alt_5750_new	21	25	30	22	9	15	24	24	28	17
GATCAAAGCACGTATC	alt_5750_new	21	34	27	18	29	23	29	20	29	17
TAGAATACGTGAGCAT	alt_5750_new	0	0	0	0	0	0	0	0	0	0
TAGGCCGACCTCCGGG	alt_5750_new	0	0	0	0	0	0	0	0	0	0
TAACATGTCAATTCTG	alt_5750_new	44	53	50	44	38	40	53	34	39	39
AGTGGGATCCCCGGCT	alt_5750_new	74	87	95	94	99	66	87	79	119	72
GCACATGTCTGTTGAG	alt_5750_new	0	0	0	0	0	0	0	0	0	0
ATCTTCTTCCGTGCAC	alt_5750_new	4	7	9	8	4	3	5	4	7	3
GCCATGCTCGCGACTG	alt_5750_new	2	6	3	8	2	2	2	3	7	2
GACGCGAAACAGTCAT	alt_5750_new	27	26	28	16	14	14	28	11	27	14
ATGCCTTGTCAAATAT	alt_5750_new	22	24	18	22	28	14	19	18	28	15
CTTTGGCTGCCTCTTG	alt_5750_new	14	17	17	22	19	12	24	10	12	11
GGTACATCTATTTCTT	alt_5750_new	54	79	82	68	74	57	88	66	63	46
GCGTGGTACAGATTGT	ref_5750_new	62	81	70	78	77	50	77	52	82	49
TGAATGTGTATGTGAA	alt_5750_new	0	0	0	0	0	0	0	0	0	0
ACTTACGTGCGATACT	alt_5750_new	53	140	79	60	115	63	149	65	131	50
CATGTATCATTTACTC	alt_5750_new	50	90	66	66	83	68	83	63	91	53
GCTGAGACGGCCTTTC	alt_5750_new	0	0	0	0	0	0	0	0	0	0
CGAAATGTACAGTATT	alt_5750_new	51	60	52	49	63	41	58	58	71	53
TCACCAGCCCTTGTCC	alt_5750_new	42	52	51	43	45	35	58	37	65	30
GACTAATCTGCAAATC	alt_5750_new	3	5	5	5	3	7	3	2	4	3
ATCTCTTAACTTAGTT	alt_5750_new	4	7	5	4	3	4	7	5	8	4
CAGTGGCTGCAACCCA	alt_5750_new	10	8	8	7	8	6	5	5	5	2
ATAAGGGTTTATCGGC	alt_5750_new	7	19	15	13	14	9	16	10	12	13
TGACCTTACAAATCCT	alt_5750_new	58	49	61	43	57	48	73	62	53	49
GATACGTAGCAGTACG	alt_5750_new	24	34	33	20	32	35	39	23	41	18
TGCAGGTCGCTTATGC	alt_5750_new	0	0	0	0	0	0	0	0	0	0
CAGTGGCTGCAACCCG	alt_5750_new	1	3	2	3	0	1	0	3	0	0
CGGGCTCTCGGGCACG	alt_5750_new	41	51	62	58	62	46	49	31	48	37
AGGCCCTAGTACCTCA	alt_5750_new	14	28	24	25	21	11	22	11	20	14
CTGGCTGCGGGGTAGC	ref_5750_new	70	89	77	48	80	65	73	67	74	56
GCTGAGAGCCACCGAG	alt_5750_new	27	22	32	21	16	28	21	26	29	22
GCCGAGTGGTGACACA	alt_5750_new	0	0	0	0	0	0	0	0	0	0
CGAGGAGACCTCTTAT	alt_5750_new	23	23	17	20	24	20	32	29	26	17
ATCGTTGGTGGGTAAG	alt_5750_new	36	30	39	22	40	25	50	29	50	27
TGGCACACAAGTCTAC	alt_5750_new	30	51	39	17	47	18	52	30	44	41
CCGCTATTTATTTCTA	alt_5750_new	13	22	20	6	15	18	24	26	19	5
CGAATTAGCCTCAGTG	alt_5750_new	26	34	22	25	40	19	36	14	34	8
TCTTCTGCACTTGAAA	alt_5750_new	21	17	13	25	26	19	29	25	30	18
ATATCGTCCTTAATTC	alt_5750_new	0	0	1	1	4	0	2	0	7	0
GCAATTTTCCGTTGGG	alt_5750_new	34	35	48	19	44	20	48	24	62	33
CTATGCTCCACTACTG	alt_5750_new	26	38	18	38	46	29	38	30	32	31
GCAGACTGCACATATC	alt_5750_new	0	0	0	0	0	0	0	0	0	0
TTTGTGATCCCTGTCG	alt_5750_new	13	27	38	24	29	18	35	22	41	22
AGTGCGTCGACAATTT	alt_5750_new	11	15	5	6	6	0	16	6	3	4
TTTAGCGTGGATTATT	alt_5750_new	78	97	89	77	76	53	74	80	77	44
TTACAGGTCCTGAGGT	alt_5750_new	124	131	157	119	111	139	149	91	148	90
TTGCGTCCCGGGCCAT	alt_5750_new	7	23	22	3	23	17	16	12	27	14
CAGAGTATCAGTGTTA	alt_5750_new	4	7	4	5	1	3	11	4	3	3
TCCATGCGGTCACATT	alt_5750_new	58	100	85	85	78	76	77	69	89	75
GCTGCCAGCCTTAAAT	alt_5750_new	14	21	21	21	16	13	12	15	21	10
GTCTCGGAAGCATTCT	alt_5750_new	0	0	0	0	0	0	0	0	0	0
TCTAGTTGTAACGACC	alt_5750_new	0	0	0	0	0	0	0	0	0	0
CATGTGCAGATTATGG	alt_5750_new	13	29	22	17	15	19	18	10	8	17
GTTAGCGCTCCGCTTT	alt_5750_new	14	10	17	12	8	13	16	10	9	15
TGACTCATGGCGAGAT	alt_5750_new	14	4	19	7	15	7	7	13	12	11
CCGGGACTCACACTTG	alt_5750_new	13	5	8	8	5	6	5	0	12	4
ACTTTTTGTTGCCCAG	alt_5750_new	1	12	7	2	7	4	11	0	8	3
CGCTATATGCTCTAGA	alt_5750_new	0	0	0	0	0	0	0	0	0	0
AGGTTGAGAGACTTTA	alt_5750_new	0	0	0	0	0	0	0	0	0	0
GGTCCTCAGCTCGCGT	alt_5750_new	6	23	27	9	32	11	28	17	26	15
CCTGCAGTTATCCAGT	alt_5750_new	29	43	49	45	37	39	41	32	41	26
CGTCGCGTTTTCACAC	alt_5750_new	7	7	9	5	7	7	9	4	7	2
GGTAAGCCCCTGAATT	alt_5750_new	0	0	0	0	0	0	0	0	0	0
AGCATTGAATTCATTT	alt_5750_new	19	29	21	21	28	26	23	24	25	26
GGGTTCCCGTTGGTAA	alt_5750_new	18	25	18	20	25	15	21	19	20	23
CAGTCTCGATACAGTT	alt_5750_new	12	14	17	12	28	10	14	8	25	10
TGCCCGACCAAAACTA	alt_5750_new	0	0	0	0	0	0	0	0	0	0
TTCCGTCTGTGCCCAA	alt_5750_new	18	25	31	21	25	20	15	11	29	12
GAAGGGTGCCACATAA	alt_5750_new	39	42	52	34	37	35	34	36	33	31
CCAGATGTACGCGAGC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
GTCTGTTTGCCGACGT	ref_6086_new	91	189	98	85	175	94	173	76	181	77
TCAAAACGTCTTCTGG	ref_6086_new	4	13	6	7	14	8	17	8	11	6
GCTTTCATTCCATGTT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TGTCAGTGCGATGGCT	ref_6086_new	17	26	19	14	34	21	23	15	39	10
TGTGCAAGATATTTTT	ref_6086_new	9	18	14	8	13	8	16	7	19	8
GGCTGTTTATTGTGGT	ref_6086_new	20	59	32	24	39	21	45	20	48	30
CGGGTATTAATCGATA	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TTGATTCCTCACGTCT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
ATGTTTACGACAAAGC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
GTTGTCGGACACTCCC	ref_6086_new	0	7	0	3	15	4	6	0	5	0
ACTGTGAGTCTATCGT	ref_6086_new	7	16	4	4	8	6	12	8	10	10
TTTTAGCGCGACGCGC	ref_6086_new	5	3	3	3	2	1	3	2	6	1
TTCGCTAGGCCAAACC	ref_6086_new	3	2	3	1	2	0	8	1	5	1
TCCGGCCCTTGGGTTT	ref_6086_new	3	12	9	7	10	7	7	5	10	3
CCCTTGGTCACTATAC	ref_6086_new	7	38	14	24	51	13	71	12	74	15
ACCGACTTATTGCACA	ref_6086_new	17	43	15	15	42	12	37	13	48	18
CCCGTCTAGTTAGGCA	ref_6086_new	1	5	1	2	3	2	4	0	5	1
CCGCAGGCACGGCTGA	ref_6086_new	6	8	10	8	16	8	7	6	12	5
TCTACATGGGTTCATC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
AAGCTGCAGGCTATGC	ref_6086_new	21	71	25	15	48	21	69	30	51	27
GGCAGTCGGGAGATAT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CATCGCATCTCATTGT	ref_6086_new	26	37	26	15	31	20	44	19	31	18
CTGTTTCGTTGAAGTG	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CTGTACCAGCGCGTAT	ref_6086_new	1	4	5	3	5	1	2	1	7	2
GGAACCCCTCTGTTCT	ref_6086_new	17	31	32	29	43	28	41	18	32	27
AGTCTCACGCACGATC	alt_6086_new	17	40	22	29	35	19	44	16	30	15
TTATTCAATGCCATGA	alt_6086_new	8	15	10	11	19	3	15	3	18	15
TGTCATTTTGGTTCCG	ref_6086_new	23	31	18	18	29	20	26	34	29	19
AGCTCTGAAAAATTAG	alt_6086_new	166	330	232	182	300	157	318	163	380	160
GTCGCCCCTGCACACG	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TACGGGATCGAATATT	alt_6086_new	38	44	26	19	38	17	53	31	37	24
CCTCACGGGTGGATGT	ref_6086_new	13	41	28	11	45	16	52	20	47	15
GGTTTCACCTCTATGT	ref_6086_new	6	5	3	3	5	4	7	5	10	3
TTCATCACATTGCGAG	alt_6086_new	6	21	24	15	13	9	22	16	30	7
GACAGATCACTCTGGA	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TCTGCCTAGAGCTGTC	ref_6086_new	26	75	53	56	79	38	95	34	71	46
CTTTCTTATGACACCT	ref_6086_new	60	120	66	60	84	63	120	39	94	55
CTTACAGTAGACATTG	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TCGTATTCGCTTTACT	ref_6086_new	128	207	175	112	209	140	214	126	233	87
ACAGCTCTTGAACCGG	ref_6086_new	14	24	12	9	18	6	27	12	23	7
TGGCTTCTAACCGCTC	ref_6086_new	1	4	1	1	1	1	1	2	2	6
TCTTTATTTAGGAGCT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
GATCCGAGCATACGGA	ref_6086_new	17	20	8	15	19	11	22	11	18	12
GAAACCCCAGGAGCGT	ref_6086_new	38	39	40	36	36	33	53	37	58	27
TCCGCGGGCGGCTTCT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CTATTCACAGTACTTT	ref_6086_new	26	43	40	28	50	33	70	21	58	31
CAGCTTAGTCGTTCGA	ref_6086_new	13	46	38	21	35	20	60	19	53	17
CTGAGGCTGGCTCTTG	ref_6086_new	19	33	24	22	33	23	30	23	36	12
GGAGGGTCAGCTATTG	ref_6086_new	16	36	22	16	29	24	31	12	43	20
CTACTCATACCGCAGG	ref_6086_new	35	82	56	42	66	35	77	42	61	42
AATTAGGTTCTCTGCT	ref_6086_new	45	60	61	55	63	52	78	36	73	59
TTTCTTGTCTCCCTTT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TTCTACGGCTGTTTCG	ref_6086_new	30	53	37	34	58	34	69	36	75	31
ACATGTGTTGGGCATA	ref_6086_new	11	18	10	11	27	7	21	12	23	7
AGTGGGTCGGTAAATG	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TCCAGGTAGCCATCGT	ref_6086_new	4	32	7	2	35	7	33	5	27	10
GCTGTAAAATTCATAC	ref_6086_new	61	97	61	72	97	68	86	49	98	60
TGTGTAAAGACGGATC	ref_6086_new	47	65	44	45	102	49	68	44	65	55
ATTTTTGTCTAGGGCC	ref_6086_new	15	35	22	20	34	17	22	11	12	11
AGCAGGACCCTTGATG	ref_6086_new	66	63	64	42	85	49	86	47	84	43
CGTGAGTTTACTAATT	ref_6086_new	10	21	9	17	16	12	27	10	19	8
TAGTATTAGGCCAACG	ref_6086_new	22	48	35	26	32	28	38	24	31	26
TATTGTCGCACCAGTG	ref_6086_new	3	6	3	4	8	3	5	5	8	3
TTAGTTTGTTGACATG	ref_6086_new	170	338	185	135	357	151	343	146	350	154
AGTCGAAGAACTGCTT	ref_6086_new	65	114	86	66	100	72	99	68	100	56
CATCACGGTTTCCGGC	ref_6086_new	10	14	14	11	15	16	16	8	16	7
AACGAAAGCCGTGAGT	ref_6086_new	87	153	93	81	160	75	146	81	155	79
CTATGTGCAAGGACGC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TTCACTACGAATAGGC	ref_6086_new	34	55	47	40	72	31	71	47	63	25
CGTATCTTCGTGGGCT	ref_6086_new	106	212	131	115	248	84	221	101	243	84
GAGATCTCGAATGTAT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CTCGCCTTGTCTTCTC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
GAAATCCTCCGTTGCA	ref_6086_new	3	13	11	2	15	3	4	3	6	3
CTCCTACCCCTTTTTG	ref_6086_new	18	37	25	24	30	13	28	15	38	21
TTCGCTCAAAGCTTTC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
GTGCCATTGCAAGGTA	ref_6086_new	86	175	129	80	186	90	173	63	164	90
TGTCCTACGGTGCTCC	ref_6086_new	50	85	59	56	81	58	77	41	94	34
GCCGTAAGATTCTATT	ref_6086_new	18	29	14	22	50	11	30	15	30	21
CACGTAGAGACGCCTG	ref_6086_new	16	33	27	28	19	12	35	21	26	17
TCATCTATACTTATTG	ref_6086_new	20	43	20	15	35	17	29	15	31	14
TTTTGTAGTCGTGTTT	ref_6086_new	16	22	13	9	23	13	32	14	14	12
CTGAGGAGTCTGCACA	ref_6086_new	55	102	69	67	112	72	93	61	145	49
CGTGTTTTCGTCAAAT	ref_6086_new	13	21	18	11	23	12	33	12	28	11
TTTAGCTATTTGTAAT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CCGCGAGACAGTCAAA	ref_6086_new	7	12	5	6	10	3	12	5	11	3
GGCGTGAGACCACTAT	ref_6086_new	9	5	6	3	8	3	15	8	12	6
ATGCCCCGGACTTCCC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
AATTTACTAAAGGACC	ref_6086_new	17	18	12	12	27	7	13	8	24	15
GACTGAGATGCTGTGA	ref_6086_new	11	32	31	18	21	19	27	7	37	8
CATACCCTCTGATTAC	ref_6086_new	5	21	3	3	31	6	29	2	25	6
ACGCTTAATTCGATAA	ref_6086_new	0	0	0	0	0	0	0	0	0	0
ATTCCTGGTATGCAGT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CATCCGATCACACTTT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
AGGCGAGGCCGTAACT	ref_6086_new	23	31	31	19	32	21	40	22	32	18
TCCTCTTCTTCATGGC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TCGGCTTGTCTCTTCT	ref_6086_new	44	47	63	58	65	41	58	41	61	29
GTTGGTATTGTCTCGC	ref_6086_new	3	18	5	4	12	4	7	7	15	1
CGTCTGCGGAGACATT	ref_6086_new	16	25	19	19	17	15	21	11	31	10
GAATTTCTAGATCCTC	ref_6086_new	29	49	23	19	56	26	41	27	50	31
TTTTTCGATTAGGATT	ref_6086_new	92	138	94	84	136	78	165	99	154	58
ATGGTCGCAGCGACTT	ref_6086_new	10	28	23	20	21	19	21	6	26	10
GGAAATACTCTATATT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TGGGGAACTACGGCTC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CAGGGCGTTTGCCATG	ref_6086_new	24	28	24	21	35	37	31	23	33	18
GGCGACCAATAGAACG	ref_6086_new	61	84	77	54	101	55	104	64	98	52
TCAAACTCGTCTACTA	ref_6086_new	0	4	0	3	3	1	6	3	14	2
TTTAGCACCGCGTGCT	ref_6086_new	44	113	73	65	112	43	126	52	115	42
CTGCTCGTCTTGCTTA	ref_6086_new	0	0	0	0	0	0	0	0	0	0
AAACGGTCCGCTTCTT	ref_6086_new	12	19	24	17	30	22	26	18	31	9
ATCTGCCTTCAATTCG	ref_6086_new	23	19	26	29	30	15	19	16	35	15
TTAGGTTTTCTACTGA	ref_6086_new	21	24	14	18	36	13	21	13	25	14
CGTTTCACGTATGTTG	ref_6086_new	17	20	21	7	14	21	23	8	26	12
TTATTGCCAGACGTGC	ref_6086_new	21	29	16	18	25	20	31	13	29	15
GCGGTCGGAGCCCGGT	ref_6086_new	47	64	65	59	71	44	67	37	89	44
TCTGCAATCACGGTCG	ref_6086_new	0	0	0	0	0	0	0	0	0	0
TAACGTTATGCGCCTA	ref_6086_new	4	17	18	11	15	11	24	15	17	18
GGCTCGTGAGATGAGA	ref_6086_new	8	4	6	10	7	4	5	1	5	2
GCTGCCAGGTACGGAA	ref_6086_new	0	0	0	0	0	0	0	0	0	0
ATCACCTACTTTTTAA	ref_6086_new	32	42	43	35	68	21	73	24	49	21
ACGAGTTGGACGCTCA	ref_6086_new	30	35	30	29	51	25	46	26	41	20
TTTCTGGATACCGCTC	ref_6086_new	8	16	9	10	27	5	21	7	16	11
CCACGATCTACCGTGA	ref_6086_new	13	46	14	16	57	11	47	9	41	15
TCGTCGACGTGTCCAA	ref_6086_new	12	29	14	13	19	9	26	14	31	9
GCTAGCAACCGATGCG	ref_6086_new	66	114	72	52	110	66	136	53	118	65
GCTAGGTACGCGCCTA	ref_6086_new	8	6	9	5	9	4	17	5	9	10
CACTGTCTATTTCTAT	ref_6086_new	66	96	95	56	86	64	119	72	84	54
AAGTAACCTAGGTAGT	ref_6086_new	18	28	25	17	21	22	44	19	28	13
TGAGCGACAGGCCATT	ref_6086_new	30	45	36	28	46	24	42	31	50	20
GAATCATGAGCAGTTC	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CTGATGCATCAGGTTT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
CGTAGCAGATTTGGGA	ref_6086_new	12	22	15	12	22	8	25	9	16	13
CTCGAGGCTACGTGAT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
GGGGAGACCCGGCCAT	ref_6086_new	17	19	21	16	21	17	19	14	19	13
GTCTATCGCCCACATA	ref_6086_new	43	80	53	48	87	54	112	47	76	41
CTTTAGGAAGAGTTAT	ref_6086_new	0	0	0	0	0	0	0	0	0	0
AAATGATTATTGCTTA	ref_6086_new	24	30	17	21	26	23	40	19	54	19
TCATTTGTCTACCCGA	ref_6086_new	13	30	33	22	35	21	53	20	29	21
TCGGGCGCGTTTCCCT	alt_2544_negative	52	57	42	54	40	39	48	28	54	40
TGTATCGAGCTTGTGT	alt_2544_negative	66	58	75	72	55	64	82	61	64	48
CCGCCCTGTTCTTTGT	alt_2544_negative	41	59	43	50	61	37	73	31	84	46
CTTGACCTCAGAGGCT	alt_2544_negative	91	104	109	85	113	90	77	102	89	83
GCGTATTCCGATGCAA	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
AAATCCGGGGGGCTAT	alt_2544_negative	15	13	16	15	10	7	11	17	13	9
TGCAATTCCCGTGGTT	alt_2544_negative	30	36	42	39	28	34	38	53	42	36
TTACAACAATGAGCAC	alt_2544_negative	35	25	37	36	30	19	33	20	25	22
TAAACTGCCACTTTGT	alt_2544_negative	40	42	56	50	37	40	32	39	32	56
GGTGATTGGAGAGCTC	alt_2544_negative	6	12	25	9	5	17	21	13	10	11
TATATTAAGATTGTAC	alt_2544_negative	33	34	32	30	28	41	40	27	30	28
AGACTGCTTTGGGTCT	alt_2544_negative	276	294	309	228	252	226	286	278	263	224
AGGCTAGTGCGATTTT	alt_2544_negative	69	53	82	73	70	76	69	55	69	67
AGCCAAGTTATTGTCA	alt_2544_negative	3	0	1	2	6	3	6	5	2	4
TTACTTCCCGGTCAGC	alt_2544_negative	15	16	12	18	17	23	12	9	5	12
AGCGGATAGGGTGGGG	alt_2544_negative	82	59	67	77	50	66	47	66	54	50
CGTCCAGTATGTGGCG	alt_2544_negative	27	28	40	29	41	33	43	27	40	32
TATTGTTTTAGCTACG	alt_2544_negative	31	32	34	37	42	38	44	32	40	32
TTGTAACCAACAGACT	alt_2544_negative	28	20	42	23	21	28	36	27	22	20
TGACCACGATTATTTT	alt_2544_negative	79	79	101	81	51	76	76	67	84	46
GGTATTCAATCTGTTT	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
TGACCCCCCTCAGCAC	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
ATTCACATGCGAGTTG	alt_2544_negative	36	43	48	32	20	24	43	35	39	42
TTGTCTATCGTACCGT	alt_2544_negative	16	16	21	10	17	15	17	15	12	7
GAATCCATACCTCCGA	alt_2544_negative	7	12	9	16	8	9	15	14	8	12
GGACAATTTTGGTATC	alt_2544_negative	3	6	9	10	6	3	2	6	3	7
ACATGGTCCGCTAGCG	alt_2544_negative	9	9	4	8	8	3	7	9	3	4
GGGACGTTTACTATGG	alt_2544_negative	29	22	40	33	16	23	23	25	21	18
TTCTTATACGCTGTGT	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
CTCTCGCTTTGTGCAC	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
CCCTCTTAGGTGGGTA	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
CAAATTAGTGGTAGCT	alt_2544_negative	21	24	28	14	16	11	8	13	21	20
CAATTTCGCGGTTTAC	alt_2544_negative	1	2	3	3	2	3	4	5	1	0
CCTCATTAATTGGGTT	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
CTAGATTTTAAGTTTA	alt_2544_negative	60	50	56	56	43	44	57	47	68	44
TAGCCTAGACCCTTAC	alt_2544_negative	6	10	5	6	9	1	8	3	13	4
CTTCTCGGTCCCTGTT	alt_2544_negative	0	0	0	0	0	0	0	0	0	0
GCCCCTGGGTGGGTCT	alt_2544_negative	6	9	3	3	3	5	11	7	6	5
GTCTCTGCCTCTTTCT	alt_2544_negative	69	46	85	60	54	60	59	57	68	76
GCTGTTGGTTACAGGC	alt_2544_negative	97	103	117	108	81	110	78	85	91	73
ACGGTATTACCCACTG	alt_2544_negative	9	16	8	8	12	5	28	10	18	12
TCTGCAGGTTTTGATT	alt_2544_negative	11	10	15	11	13	21	17	9	25	15
CCGTACCGTGAAATTC	alt_2544_negative	37	37	46	19	31	33	27	35	36	30
AAGTAAAAGTAGATTG	alt_2544_negative	14	12	16	20	12	10	6	20	21	19
TACGAATTGTTCCATG	alt_2544_negative	66	57	102	80	52	76	63	84	84	66
GCCGTGTTACTTTACG	alt_2544_negative	6	8	4	3	9	4	10	4	8	2
GGGGTATAGCCAGAGC	alt_2544_negative	29	37	42	26	28	40	28	27	35	39
TCACAGCCTCCGCTTG	alt_2544_negative	3	7	7	15	4	8	7	2	10	4
GGAGTCGTTACGCCAC	alt_2544_negative	64	49	77	72	56	58	49	64	63	48
ACCGACGGGATCTGGC	alt_2544_negative	105	88	114	99	83	99	98	82	95	78
GTCCATATTAGCATCA	alt_2355_missing	4	13	7	12	13	16	14	10	10	8
CACTATTGCAATGGTT	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
CCGCATGTGTTATCAG	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
CGCAACATTCGCTTCG	alt_2355_missing	38	42	67	51	53	44	51	38	69	54
GTCGAACACTTATAAG	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
CAATAGAGTAAGGTGC	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
ACAACTTTTAAATTGG	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
ATAACCTGTTGCGGCT	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
GAAGACGCGGCGGAAG	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
TTCTCCGCATGTCAGG	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
GCCATGTAGGTGCGTC	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
ACTTCTTCAGGCCCGA	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
TTGTATTTTTTTTCCA	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
GCCTAGGAGCCTGTGC	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
GTGGCTTTCTGCTATG	alt_2355_missing	18	16	16	13	10	18	11	13	18	10
GTGAGCTCCCGAGCGG	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
TTACTTTTGGGCAGTA	alt_2355_missing	5	7	12	5	9	3	9	10	7	5
ACCCACGTCCGACCGG	alt_2355_missing	7	9	10	3	10	9	5	9	13	9
CGCTAAGTGGCGCTTA	alt_2355_missing	20	23	16	18	24	21	14	22	11	23
CGCTTTCTTATACCAT	alt_2355_missing	4	3	7	1	5	5	4	8	5	5
GCGCGGATGGAGCCGT	alt_2355_missing	7	13	17	12	14	9	8	16	13	11
GAGCCACGGCTGTCTT	alt_2355_missing	2	1	1	6	3	1	3	2	0	2
CGTCTGTTTAACCCTA	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
ATGTCCTTTCATTCCC	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
AATAATAACCGATGTT	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
CTCAGTCCCCCGAACA	alt_2355_missing	0	0	0	0	0	0	0	0	0	0
CTAGTGGGGGTCGGAC	ref_5851_new	91	104	113	84	105	98	95	96	120	74
TAATGCCCCCCGTTGC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CTGGACGCTCGGATTT	ref_5851_new	7	16	12	6	17	12	15	13	8	13
TCGCCCTACGGTAGCA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GACTCCCGTGGAACTT	ref_5851_new	12	16	12	13	16	4	23	10	17	3
TATCGAAACACTGGTT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CTACCAGAAGCTACCA	ref_5851_new	18	20	22	18	28	21	32	19	14	17
ATGTTCCCTTCTGGAA	ref_5851_new	7	5	9	10	6	10	9	10	4	4
ATAAGTAGCTGATCAG	ref_5851_new	30	50	23	29	21	18	35	33	32	36
TTTTACGAATGGTTCG	ref_5851_new	7	4	5	9	9	8	7	6	4	7
GGGCGCTCACTTGAGC	ref_5851_new	34	43	48	40	55	39	46	42	45	51
GCCTTTCGAGTTGAGT	ref_5851_new	18	17	28	11	22	10	19	19	19	15
ACAGTCCATTTGCGTA	ref_5851_new	33	46	25	31	38	23	35	31	38	20
TTCTTCGGTGAGCATC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CCTAAAGCCTCCTCTT	ref_5851_new	65	115	87	84	99	57	101	51	108	43
ACTTGGTTTAACTCTC	ref_5851_new	41	95	45	60	86	32	72	34	105	33
TACTGTCTTAGGCATT	ref_5851_new	5	3	5	2	3	4	3	3	1	2
ATGTCACTACGAAGGT	ref_5851_new	26	17	30	17	23	20	17	19	38	15
GGAGGTAATAACTAAC	ref_5851_new	7	8	4	5	11	5	9	4	9	4
TTACCGTGGTCGATCC	ref_5851_new	19	42	24	20	25	23	31	34	39	25
AGTTTTTCGAATTCTC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CTCTTTACCTATTAGC	ref_5851_new	24	33	14	23	25	15	17	15	28	10
AAGCAGGCCGAAGCCG	ref_5851_new	1	0	10	1	1	3	4	1	3	2
TGCGATTAGTGGTTGG	ref_5851_new	103	159	141	114	131	108	142	96	153	109
ATACTTGAGAACGGTG	ref_5851_new	41	27	48	22	36	24	37	33	46	33
GTCACAAGGGACACAA	ref_5851_new	8	13	10	11	9	15	10	7	10	10
CGTCCGCTCTCTGCTT	ref_5851_new	19	27	33	16	29	17	29	31	22	26
ACTAGTCGATGGGTGC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
ACCCCAGCACAGCTCG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GACGCTCGTTGGTCAA	ref_5851_new	9	13	18	3	12	6	18	12	13	16
GGCCAATCGAAGATTT	ref_5851_new	9	11	15	11	21	9	20	7	17	17
GGTCAGTTGGCGGGGC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CGTGACTGACAATATA	ref_5851_new	18	22	18	22	36	21	22	20	17	12
ATAATTAATAAGGCCA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CTGATGTCGGTTTTGG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GAGCATTACTCGAATA	ref_5851_new	13	25	9	12	16	7	20	8	30	9
TTGTATCATCATCACG	ref_5851_new	0	1	0	0	0	1	0	0	0	1
CCCACTGGGTGTGACT	ref_5851_new	114	150	136	116	183	138	176	122	171	131
GTGTAACGCGGTTCTT	ref_5851_new	122	174	157	126	139	145	199	90	173	121
CCAGACTCCCGATCCC	ref_5851_new	9	8	13	6	10	6	15	6	11	7
CCTGGAGAATATTAGT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
ATGGTACTGCCCCGAT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GCTCCATAGGGACTTA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GGCTTCCGGCGATCGT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GGTTTAGTAGTATCTT	ref_5851_new	11	12	5	6	8	7	19	12	15	4
GTTTGTACGGAGGTCT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GGCATGATTTCGGGGA	ref_5851_new	53	47	46	51	53	38	60	54	68	48
TTTCTCGGAGTAAGAT	ref_5851_new	47	39	69	40	39	41	40	36	68	47
TGCTTCCCTGTCATTC	ref_5851_new	0	0	1	0	2	1	4	1	3	1
ACCGCTTACATCCCTG	ref_5851_new	12	30	14	19	23	11	21	11	37	23
GGGTTAATGTCGCGCC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
AGGGATAAATTTGCGG	ref_5851_new	21	15	17	16	25	17	19	22	29	20
GTGGCTGGTGTCCACG	ref_5851_new	21	20	24	14	17	20	34	21	30	25
CTGAAGGTTCAGCTTA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CGTTTAGCACTGGCTC	ref_5851_new	12	30	36	20	27	19	30	20	25	32
GCATGAACACTTGGCC	ref_5851_new	27	17	23	16	16	18	17	18	28	13
TTTTGATGGTTCTGGC	ref_5851_new	34	36	45	53	30	36	46	26	40	36
CGTTCGTTCGAGAGGA	ref_5851_new	258	315	317	302	332	305	327	237	339	294
GTTTTGCTTATCGCTG	ref_5851_new	1	2	3	2	2	1	2	2	2	1
GTTTTGGCAGGCATAT	ref_5851_new	69	47	61	51	49	56	53	38	58	47
CCTCTCCCGGAAAGTC	ref_5851_new	38	106	38	31	85	27	123	22	102	27
ATGCTAACAGCGATAG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CGATATGTTCCCGAGA	ref_5851_new	14	13	20	10	15	8	11	12	14	10
CTACCCTGTCTCAGTG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CATCCAGGGGTTTCGC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
AGTGTTTTCCGGCCTG	ref_5851_new	4	6	9	4	4	3	2	5	6	4
GGCTGTTTGTTATCAG	ref_5851_new	97	149	138	127	123	96	140	85	147	94
CAAGAACTTTTCTGGT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TTCGCCGTTACTATGG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
ATATTCCGTCCGCTTT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GTTGACCATTCTACCG	ref_5851_new	13	15	23	19	24	12	20	17	23	14
TTCTCTTGGACTATAA	ref_5851_new	19	20	21	20	20	16	24	19	19	13
GGTTATTTGAACATCA	ref_5851_new	2	0	1	0	2	1	0	0	3	1
TATGACCGGATGGCTT	ref_5851_new	9	16	13	16	18	15	7	10	18	18
TCGATTCTTTTTATGA	ref_5851_new	12	5	12	14	5	5	7	7	10	8
CCGCCTTTTGCAAATA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CAAATGGGCAGCATAG	ref_5851_new	20	19	30	28	32	21	19	27	26	21
ATTCTCTTAGGGGGTC	ref_5851_new	3	8	5	5	1	4	3	8	7	6
ACTTTCTAGGTTCAAT	ref_5851_new	8	12	9	4	13	10	20	7	17	12
GGCCATCTATAACTGT	ref_5851_new	14	29	21	23	34	16	28	17	26	11
GCTGGAGCTCACATTC	ref_5851_new	6	7	8	10	9	4	4	5	14	9
CTTCACGTGTACCGTG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TCCTTATTCCGAGCCG	ref_5851_new	15	14	10	15	19	11	16	9	19	17
CCGCGATGCATCTGTA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GTCAGGTGTGCTATCG	ref_5851_new	43	50	52	42	46	40	64	37	40	31
ACCACCGACCTACCCG	ref_5851_new	16	38	24	29	40	25	49	19	33	23
TTCATCTTCTTGATTT	ref_5851_new	9	6	9	16	10	14	14	6	7	7
AAGAAAAACTACCCCC	ref_5851_new	36	64	52	38	47	49	62	31	68	35
GAACACTTTACAACGT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TCATAGTATGATCTTA	ref_5851_new	0	0	0	0	0	0	0	0	0	0
ATGCGAATTAGGCAAC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GATCCTGTTTCTTTTC	ref_5851_new	36	38	63	47	37	42	38	35	33	43
AACGACCGACTTTCTG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TTTGCAGGCCATCTTT	ref_5851_new	28	30	33	30	46	41	38	30	39	33
TTATGTGGCTAGTGAA	ref_5851_new	5	4	7	3	9	7	11	5	7	5
TGTGGAAATCGTTCTG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
ATCGCTAACGGGGTGC	ref_5851_new	37	35	54	33	46	38	47	28	57	42
GACGGAACACCGTAAC	ref_5851_new	17	33	32	28	42	24	36	22	39	19
TCTTCCAGCCTAGCTT	ref_5851_new	0	1	3	2	5	2	8	5	10	3
ATCGACGGTTGGATAT	ref_5851_new	100	95	105	75	89	91	115	75	117	50
TAATTAATAGTCTGTT	ref_5851_new	25	34	29	16	20	16	36	21	22	15
CTTCAGCGTCTTACGT	ref_5851_new	30	56	38	41	55	40	74	37	52	32
CGTAATTATCAACAAC	ref_5851_new	16	14	25	11	27	12	26	17	17	15
TCTTAATGACACGTTT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TATGTCACACCCATTT	ref_5851_new	61	63	69	80	73	75	70	53	78	75
GTTACATAGTTTGCCG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CACGTCAGTAGTGCTC	ref_5851_new	5	7	4	3	4	5	7	8	9	4
CTCGTAGCTAAGATTC	ref_5851_new	18	36	20	17	22	27	35	13	37	20
GCCCGACTTACTCGTT	ref_5851_new	55	56	58	59	49	54	52	53	72	56
TTGTGATTAATCGGCA	ref_5851_new	56	92	73	84	88	74	119	61	81	51
TGATCCGCGATCTATC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GTTTCCCGGGTTCCCT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CGCTGAGGATCTGCTT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GCACATTAAATCCTTT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GGTTATCGACGCCGTT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GCCGGTTGTTTAGTCG	ref_5851_new	7	21	7	16	26	13	17	11	20	10
CTACTGCTAATGGAAG	ref_5851_new	17	12	20	16	18	16	12	7	20	10
CTCACGCACGAAGCGT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TCGCTAGACGCTGTGC	ref_5851_new	47	50	41	34	43	24	45	31	48	33
TCGCGCAAGTGCTGGA	ref_5851_new	14	27	26	21	19	16	14	18	21	18
ATTGGCTGCGTACATT	ref_5851_new	0	0	2	5	1	1	1	1	0	1
TCGTGTGCTTCGAAGG	ref_5851_new	7	5	7	7	8	7	13	9	21	6
AGGCTTCGTGTGCAGC	ref_5851_new	49	61	62	72	54	40	62	53	81	37
TTCATATGTTGCATTC	ref_5851_new	28	21	21	15	42	21	20	25	15	25
CACCACTAATAATGTG	ref_5851_new	51	50	47	51	62	51	65	45	66	36
TTTAACGTGTGAGATT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TCTTACAAGTAGGGTC	ref_5851_new	85	82	106	86	97	88	90	80	91	78
TACTGGTCCGATTTTA	ref_5851_new	11	12	24	14	14	15	24	6	19	21
CTCATTTTCTATATGT	ref_5851_new	0	0	0	0	0	0	0	0	0	0
ACTTCTTCATGCTAAG	ref_5851_new	33	43	49	38	46	32	49	30	37	33
ATGATATAAGGCGTTG	ref_5851_new	8	10	11	9	6	8	10	4	8	5
TCATTCATTACTTCCG	ref_5851_new	51	51	56	60	36	56	46	41	57	51
TGCAGCATTTTCGATG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
GTTGGCCCCCCCGTTG	ref_5851_new	26	12	24	19	21	21	36	18	22	17
CGTTTCCGACAAGCTC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TCAAAATGATCTTCCT	ref_5851_new	30	32	39	40	29	19	25	22	39	32
CTTAGTCCTACTGTTG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
AACACTACTTTACATA	ref_5851_new	6	4	9	2	10	4	3	2	8	2
CCTTTGGGGTATAATG	ref_5851_new	13	18	21	11	23	14	17	9	16	20
ACCTTTTGCTCGATTT	ref_5851_new	33	40	39	40	46	28	30	33	51	32
CCGACTTGTTTAAGTA	ref_5851_new	20	29	24	14	27	15	23	18	31	14
ATTCCGTAATTGGAGA	ref_5851_new	95	96	102	91	78	84	96	74	93	71
AGCTAATGCTCAGTTG	ref_5851_new	0	0	0	0	0	0	0	0	0	0
CAGGACCATGAAGAAC	ref_5851_new	28	37	37	27	50	28	51	25	45	18
GCTTTTAATTTTAATC	ref_5851_new	10	9	9	6	4	5	6	3	5	5
TCGAGCAGTTGTTCCC	ref_5851_new	0	0	0	0	0	0	0	0	0	0
TTCTTCGGCCAGTATA	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GTAGTCTCGTACTGTG	alt_5796_new	4	2	5	6	3	3	6	3	11	3
ACTCACTCCAAAATAA	alt_5796_new	45	61	39	39	79	26	73	27	79	26
GCGCCATCCTCAGGGT	alt_5796_new	17	10	18	12	10	9	7	12	21	12
GAGCCACTCTTCAAGC	alt_5796_new	0	0	0	0	0	0	0	0	0	0
TACACAGGGCCTGGTA	alt_5796_new	60	54	65	59	52	59	49	64	67	65
CTTTTCACGACTGCAC	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GTTTTTCATGCTCGAT	alt_5796_new	53	41	53	56	37	55	36	40	35	44
ATGGTAACCGAGCGGG	alt_5796_new	83	54	100	86	72	91	68	73	91	67
CAACTTACCCTAACTG	alt_5796_new	6	13	11	14	11	19	13	4	12	7
CTCAACATCCTTGTGT	alt_5796_new	0	0	0	0	0	0	0	0	0	1
TCTTAGGCCCGAGAGG	alt_5796_new	66	28	58	54	48	39	48	45	44	55
GAACGCTCGCGTCAGT	alt_5796_new	13	17	25	11	12	12	12	13	13	26
ACGCGGTTAACGTGGG	alt_5796_new	60	34	53	40	62	50	44	54	35	41
TATGCACAAGAGGTGC	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GGCCTGTCCATTCTAG	alt_5796_new	8	9	8	8	9	9	7	1	5	9
TTGACGCGCTGTTAAG	alt_5796_new	17	14	10	24	12	18	9	13	10	13
TTGAACTATTTAAATA	alt_5796_new	10	4	4	3	4	3	3	10	8	5
AACTCTATGCTCCTTA	alt_5796_new	37	31	50	32	37	26	33	35	42	33
CGAAGTTCAAGTTAAG	alt_5796_new	20	41	38	25	27	42	35	29	36	30
TCTACAGTATTAGACC	alt_5796_new	63	56	71	58	85	65	54	62	55	42
CTTATCGTTGTGCTTA	alt_5796_new	0	0	0	0	0	0	0	0	0	0
AATAGCTCATTACGCC	alt_5796_new	20	26	11	16	15	13	12	8	28	10
CTGTCCCTTTCTTCAT	alt_5796_new	78	43	79	58	62	69	41	49	51	45
CAGTTGCTCTTGACTG	ref_5796_new	90	66	110	80	71	75	73	84	78	84
ACGGGGTACTTGCTAT	alt_5796_new	40	44	67	59	40	54	45	50	40	49
TTTAAGGGTTCGGTTG	alt_5796_new	11	6	19	16	11	16	14	12	15	14
CAGGGCGATTTCGTGG	alt_5796_new	0	0	0	0	0	0	0	0	0	0
ACTCCCCCCGCGGTCA	alt_5796_new	0	8	0	0	6	1	14	2	15	2
CAGTTTGTAGGTCTGT	alt_5796_new	0	0	0	0	0	0	0	0	0	0
CTGAAAAGACCAATCC	alt_5796_new	21	34	26	48	38	24	45	18	46	19
TTTAGTTTCTCCGACC	alt_5796_new	18	17	20	8	15	17	23	19	16	12
TTTTTGCACTGGCCAG	alt_5796_new	0	0	0	0	0	0	0	0	0	0
ATAAGGGTATCGAGGC	alt_5796_new	42	51	56	47	48	45	35	42	57	44
CGGACGTCAGCGGACC	alt_5796_new	119	77	113	91	76	80	74	82	81	85
ACTGAAGCTATCACGG	alt_5796_new	0	0	0	0	0	0	0	0	0	0
CAACAGGAGAACTTAG	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GTGTTCCCTTTACCCT	alt_5796_new	17	8	22	11	12	15	16	24	16	12
GCTCCTCCGTGAGAAA	alt_5796_new	9	24	11	5	19	12	14	13	8	9
CCAACGTCGTGGAGTC	alt_5796_new	0	0	0	0	0	0	0	0	0	0
ACATGACATTGCGGTC	alt_5796_new	7	6	4	8	3	2	4	3	3	4
CCCCTACCAATCCCGC	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GTGTACCTTCCGCATG	alt_5796_new	0	0	0	0	0	0	0	0	0	0
TTGCCAGTTTTGCGCG	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GACCAGCTAGGTCTTA	alt_5796_new	40	31	50	38	30	37	38	43	50	29
TAAACCTGTGGGGCTG	alt_5796_new	0	0	0	0	0	0	0	0	0	0
ATACCGATGTTGATAG	alt_5796_new	16	6	7	6	9	8	4	15	6	7
GACTCTTGCTATATCA	alt_5796_new	75	47	66	73	56	79	49	53	48	82
TTCTAGGTTACTAAGC	alt_5796_new	96	73	101	59	84	88	72	68	66	59
CTCATAGTGCGAGGAT	alt_5796_new	4	3	4	1	6	5	5	6	4	7
ACACGCTCTATCAACT	alt_5796_new	21	28	23	21	19	21	14	26	23	16
CACTTCGGCGCCGCAA	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GTATGGCATTTTTTAC	alt_5796_new	33	34	46	35	42	37	30	37	43	45
GTACTAAACAGGATTC	alt_5796_new	15	16	20	9	13	30	24	11	17	13
GGGATATCCTGTGACC	alt_5796_new	45	29	75	50	38	64	48	45	50	49
TAACTGTGATTTCTAT	alt_5796_new	0	0	0	0	0	0	0	0	0	0
GACTTGCAAGCCACGT	alt_5796_new	10	15	18	14	23	17	16	15	14	10
ACCAGTTGCCATATTG	alt_5796_new	64	41	61	55	46	50	55	51	43	51
CCATTTCTTCCAGCGA	alt_5796_new	102	65	110	74	65	92	79	76	78	78
GTACCTGGCCCGTCCA	alt_5796_new	70	64	109	83	43	65	70	72	65	73
CGACTCCTAATCGTAT	alt_5796_new	51	32	56	43	34	48	31	42	46	36
TCCCGTAGGTGGACCC	alt_5796_new	0	0	0	0	0	0	0	0	0	0
CGGGTAACATTCGTTT	alt_5796_new	0	0	0	0	0	0	0	0	0	0
ATTTGCTTTTCCCTGT	alt_5796_new	56	28	66	26	26	47	44	38	30	56
TTTAGAGTTGGTTACG	alt_5796_new	19	11	16	21	9	10	10	9	16	13
CAGCGATTGCAAGGGC	alt_5796_new	39	40	72	44	48	37	35	50	44	37
CCGTGTCCTTTGGAAA	alt_4820_reverse	18	13	7	10	17	6	15	7	15	14
GGCGCATCAATCATGG	alt_4820_reverse	32	28	31	35	31	28	29	34	37	40
GACATCTCGCAACGGC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TCTACCCACTGGACCT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTAGTACTTCTTA	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
GTATAACGCTTTTTTG	ref_4820_reverse	1	1	2	1	1	0	1	0	1	1
AGAGTGTGGTTATAAC	alt_4820_reverse	11	6	8	7	8	6	2	5	11	1
GAACTGCCCCAATCCT	alt_4820_reverse	18	24	26	22	37	18	31	25	28	19
TGGCGGGCATTCGTGG	alt_4820_reverse	53	51	80	69	50	56	71	40	63	37
CGCGTTGTCTTACCAC	alt_4820_reverse	33	66	33	34	68	23	72	31	68	24
TTAATACTTGTCAGAG	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTCAAGCGCTGCT	alt_4820_reverse	4	6	5	3	10	3	7	4	8	3
CTCTTCTCGTACAGCC	alt_4820_reverse	7	11	5	3	8	12	11	5	14	7
TGCACGTTTCGCATAA	alt_4820_reverse	35	37	28	35	35	31	45	15	39	19
TGTCTAGTGAAGTTAT	alt_4820_reverse	4	14	9	9	9	11	8	5	12	4
CCTTGCAGGTCAACAT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CGCATGGTCTCGCCTA	alt_4820_reverse	30	27	34	22	26	28	18	29	30	25
CATTTGATATCTCAAG	alt_4820_reverse	14	20	19	6	14	20	13	10	12	15
GGTATCACTTAGGACG	alt_4820_reverse	5	5	14	12	6	6	14	7	10	6
ATCAGAAATTGCGGAT	alt_4820_reverse	26	26	12	18	18	16	28	19	27	12
TTCCGGCGTACGGTTT	alt_4820_reverse	11	17	25	17	20	16	22	13	27	15
ATAGCAATAAGAGCTG	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTCCTTCTAATTC	alt_4820_reverse	43	47	50	46	46	44	39	44	41	39
GATAGGAATACGATCT	alt_4820_reverse	36	38	31	32	30	52	21	36	36	42
CATGCCTCCACCCGAG	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTAGTGCTTCTTA	alt_4820_reverse	1	7	0	1	6	1	4	1	7	0
TTCGTGCCGGATTATC	alt_4820_reverse	5	5	4	3	11	6	6	2	10	8
CATACTTATACAGGAA	alt_4820_reverse	53	76	58	40	68	47	64	42	56	42
CGGGCCATTCAAATCT	alt_4820_reverse	302	357	360	292	388	276	415	273	397	310
CGGTCTCAGAAGACCT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGCAGCCTCTTTT	alt_4820_reverse	20	36	36	36	35	28	34	32	31	22
GCCTTACGCCTTCCTT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CATGCTTACCGCGCCG	alt_4820_reverse	7	12	7	4	17	12	8	8	10	11
CTTTCGCCTATGGGGC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CTAACGTTATTAGGTT	alt_4820_reverse	83	106	103	89	110	96	128	93	139	118
TAGTTTGGTACTATCC	alt_4820_reverse	32	31	26	27	30	22	39	19	31	29
CGTTAAGTTTGGCGCG	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCCTCGCGGCTCT	alt_4820_reverse	27	33	32	26	44	27	47	28	44	30
CTAATCACATCGCCCT	alt_4820_reverse	72	90	109	69	86	69	89	80	92	62
TTTACGACTTGGGCGT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CAGAATGTTCGTTGCA	alt_4820_reverse	18	19	13	12	21	21	29	8	27	11
TTCAATCGTTCTCGCT	alt_4820_reverse	20	36	24	22	37	33	38	20	46	32
TATGTAGCTGATCTAG	alt_4820_reverse	67	67	57	59	44	52	61	41	85	51
GGTTATAGTTTCTTTG	alt_4820_reverse	20	19	19	18	26	27	26	17	27	13
CTCGGATGGCCGTAGG	alt_4820_reverse	23	21	30	24	14	15	18	15	12	16
TGCTCGGACTTCTCGG	alt_4820_reverse	9	9	12	4	15	7	3	12	7	2
GCCTTTGGAATCTCGC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTATAAGTTATTT	alt_4820_reverse	20	24	31	32	33	25	29	37	42	30
TCCGCGCGTGCTTTGT	alt_4820_reverse	33	91	46	36	102	40	102	43	103	40
ATAATATACTTGTCCT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTCCAAAGACTAC	alt_4820_reverse	3	11	2	3	14	2	11	1	15	4
CTTGGCTTATCTCGAG	alt_4820_reverse	15	17	25	16	28	13	39	14	21	19
TAAGCTGGTTAAGACT	alt_4820_reverse	82	125	110	106	106	74	121	107	125	83
TCGAATAGTTTAAGAC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCAGTTCGACCTC	alt_4820_reverse	8	23	6	14	26	9	13	5	17	10
GCCAAACCTTTAAGGG	alt_4820_reverse	64	91	63	50	89	58	69	53	76	59
TCCATGTTGCATATGT	alt_4820_reverse	19	46	36	19	37	22	31	27	21	20
TGGGCCACCTACATGT	alt_4820_reverse	61	65	75	44	68	55	88	50	83	38
TCTCGACCTCTGGGTG	alt_4820_reverse	32	45	29	26	26	19	50	17	29	9
GAGACTTGCTTGTGCC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CGATTATCGGACCTTA	alt_4820_reverse	23	118	20	31	105	28	112	21	127	28
TGGGATCAACGGGGCT	alt_4820_reverse	24	46	30	31	41	20	18	41	24	29
GCATTGTAGTTGTTTG	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
AATCTGTGATTACAAT	alt_4820_reverse	45	42	53	39	54	21	62	31	45	36
TAATCATTACGAGTTT	alt_4820_reverse	39	38	30	27	45	23	47	33	48	34
TCTCGTCTCTGAGGGA	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGTCAGGGTCGGG	alt_4820_reverse	16	17	23	18	21	9	27	15	19	8
TACTTCTTACCGAGTT	alt_4820_reverse	10	16	10	13	17	3	14	9	24	7
TCTATTCATTTAGTCT	alt_4820_reverse	15	26	24	28	19	16	27	17	20	15
ACCAAGGGCTACGGTT	alt_4820_reverse	2	4	8	2	7	7	12	9	4	6
CCGCTAAATAAGACGT	alt_4820_reverse	97	108	136	121	125	92	122	100	168	99
GCTCCTCCTCAGACTC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCACCGCATCTGC	alt_4820_reverse	66	92	77	57	122	52	113	49	145	57
TAAATCCGGGTCCTGC	alt_4820_reverse	46	61	49	50	60	31	62	36	80	28
ATTCGTCCGCCTGTTT	alt_4820_reverse	40	26	58	37	15	30	9	37	14	44
CGCAGCTGATTTAATA	alt_4820_reverse	46	45	71	51	56	52	60	45	51	55
TGGCGCGTGCCAACTA	alt_4820_reverse	6	3	6	9	4	7	11	6	12	7
GTCGTGTGTCGCCATG	alt_4820_reverse	67	64	84	45	70	55	75	55	89	46
TCTCCGCTGTTCGTGA	alt_4820_reverse	12	14	24	14	13	18	22	17	19	15
CTTGTTACCACCTCGG	alt_4820_reverse	18	41	37	36	65	37	49	33	41	36
ATTGTATAGTAGTTAG	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CCACAGCTTAACTAAG	alt_4820_reverse	1	7	4	1	8	4	2	8	11	3
GGTGTCCGTACGTGCC	alt_4820_reverse	92	117	97	64	88	88	111	86	109	58
CTTATAACCGCGACCT	alt_4820_reverse	39	46	45	52	66	44	52	44	65	34
GAGATGAGGGCTTAAC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGTGAAACGGTTT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTCATTGTTCTAG	alt_4820_reverse	2	3	2	1	2	0	2	2	2	1
GAATGGCCAAGGATGA	alt_4820_reverse	1	2	3	2	2	2	5	2	5	2
TCGGCATTACCAGGAA	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGCTGACATGCCC	alt_4820_reverse	21	34	35	40	29	27	39	30	49	35
TCGGAGTAGGGTCTCT	alt_4820_reverse	46	53	64	48	56	65	45	43	68	43
GCTCACTTAGTATGGT	alt_4820_reverse	7	10	4	8	7	3	9	1	5	2
GCGTCGACTTCTGCTC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
CTTATATTCCGCTCTT	alt_4820_reverse	42	55	61	50	70	49	64	51	68	50
TCCACGTGCTAGATTC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTTAGTAGCGGAA	alt_4820_reverse	1	9	9	8	8	16	8	8	6	5
AGCTAACTGCACGAGC	alt_4820_reverse	18	13	16	11	14	9	12	6	13	11
GTAATTACGCTAGTTG	alt_4820_reverse	20	25	21	14	17	14	23	15	20	15
GGTCATCGTGTTGATC	alt_4820_reverse	0	1	0	0	0	1	0	0	2	0
ATTTCTGTCTTGTGCA	alt_4820_reverse	98	105	90	85	114	85	107	88	110	75
ATTTCCCTCGTTATAC	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTCATGTATATAC	alt_4820_reverse	16	27	22	14	28	17	22	19	20	26
GTGTCAAGACCGTTCC	alt_4820_reverse	17	23	19	37	19	16	26	15	18	27
GCTTCACAGGAATATA	alt_4820_reverse	31	28	30	29	27	32	31	24	34	20
CCTTTATGCCGTGTCT	alt_4820_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCCTTCTCTTAA	alt_4820_reverse	29	26	42	22	26	25	35	34	35	29
GATAATGGTTGGGTTA	alt_4820_reverse	15	34	34	38	27	35	43	40	38	22
GTGACAGCAAACAAGA	alt_4820_reverse	74	67	90	84	85	77	91	71	92	66
GGGTTCTTAATTCTAC	alt_4820_reverse	32	52	27	34	35	30	47	21	36	21
TGTATTTGAAATTTGC	alt_4820_reverse	3	14	3	6	7	11	12	7	7	6
TTCGTGACTCTGCACC	alt_4820_reverse	1	2	1	1	1	3	5	0	1	6
TGCCAACTAGGGGTAT	alt_4820_reverse	8	7	16	7	5	8	11	8	12	3
TTGCGGTGTTGTGCGG	alt_4820_reverse	30	33	31	30	35	14	24	20	26	25
TCTATGACTTGCTTCA	alt_4820_reverse	31	42	38	37	46	42	51	43	49	32
GGTACTTGTGATGAAC	alt_4820_reverse	27	46	32	30	36	27	33	27	36	29
GGAGAGTTGGCCAGCG	alt_4820_reverse	79	113	108	107	110	83	124	77	125	82
ATAACAAGGACAACGT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TTGCTAGTGTTGACTG	alt_5784_new	50	111	73	45	126	75	137	42	137	56
ATTGTTATAATAGGTT	alt_5784_new	13	21	13	13	14	11	21	9	25	14
ACCCTTTGCTACAACG	alt_5784_new	8	18	8	9	21	6	20	6	9	6
ATGTTAGCTCGCGTAC	alt_5784_new	15	18	17	22	16	12	29	11	26	12
TTTCTCGTTACTTCTA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TCATCTTACTGCGATG	alt_5784_new	80	122	58	62	108	68	93	60	97	69
GGTCTCTAAGTAGTAG	alt_5784_new	0	0	0	0	0	0	0	0	0	0
GTATTGGGTTTTTCGT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CTGTTTTGTCTTGCGT	alt_5784_new	25	59	33	29	34	26	38	25	40	26
ACTCCTAGATTGAGCC	alt_5784_new	52	113	71	75	118	58	106	56	129	60
TTCTGTCGCGACAAGC	alt_5784_new	81	109	83	61	94	80	144	58	113	68
GGACCAGGGAGAGAGC	alt_5784_new	25	68	38	38	56	43	53	29	64	26
ATCTTTAGCTTGACTA	alt_5784_new	21	33	34	19	23	11	46	21	43	15
TATTTTGTGGCATATA	alt_5784_new	5	18	10	5	19	7	10	2	15	16
TCGCGTAGTGCGTGAC	alt_5784_new	14	27	14	13	14	16	24	3	30	8
AATCAGATCTTTCATT	ref_5784_new	0	2	3	0	6	3	6	1	0	1
TGAAGTTGGATAGCCA	alt_5784_new	17	28	34	18	28	24	47	27	41	23
GCTTTTTTGACCCTGT	alt_5784_new	34	61	59	47	61	34	54	34	65	33
CGGAATGACGGTGTCA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CATAGTGAGTACGGTT	alt_5784_new	73	108	90	51	105	49	122	70	112	58
GGTCCACTGAATTTTG	alt_5784_new	7	3	3	2	8	8	5	2	4	4
ATTCTACTCTTTGACA	alt_5784_new	59	71	67	55	54	58	72	56	62	50
ACACTTGTTGAGCTGG	alt_5784_new	9	27	8	12	19	9	16	13	28	14
TACGGGCCTTTCAAAG	alt_5784_new	24	33	30	22	57	20	39	21	51	23
GCATCGGGCAGGTGAA	alt_5784_new	40	44	32	58	50	21	51	25	67	27
TCTTTGTACTGTGTGG	alt_5784_new	0	0	0	0	0	0	0	0	0	0
GATGTAGGTCTCCGTC	alt_5784_new	56	69	65	53	62	52	81	51	85	53
CGGGCCAGTTAGGCTG	alt_5784_new	23	28	13	10	27	19	26	9	18	10
AATGCCGATACCGGAT	alt_5784_new	3	2	2	0	0	1	3	0	1	1
ACACTTGCGGTGCACT	alt_5784_new	48	66	54	34	102	38	91	31	89	27
AACGCGCACAAGCCAT	alt_5784_new	5	13	8	6	15	6	24	3	11	9
CGTCTATAAAGTGAAG	alt_5784_new	13	25	15	11	31	17	18	8	36	12
CACCGAGGCCGCCGTG	ref_5784_new	78	111	91	70	102	47	123	64	138	65
TAACATACGACAACAG	alt_5784_new	16	31	18	21	29	10	23	13	30	12
ATCTCATGAAGTTCTA	alt_5784_new	9	10	8	12	15	6	23	7	12	6
AGCCTTCACTTTAATG	alt_5784_new	11	33	12	16	27	15	25	10	44	10
TGTAAATCAATTCGGG	alt_5784_new	43	76	67	44	96	51	91	58	91	42
GAGACCCGGGCACATG	alt_5784_new	8	3	1	0	7	2	8	3	9	4
TATAGTAAAATAGCAC	alt_5784_new	4	6	10	5	6	7	14	4	7	3
ACTAACTTTGTCCGGA	alt_5784_new	19	40	26	27	46	18	35	27	35	21
TCTCTTCGGATTCTCC	alt_5784_new	14	27	13	18	33	16	31	9	31	15
GTAGTTGTAGTTGTCA	alt_5784_new	21	46	38	33	62	21	59	12	41	23
TGTTTCCCTGCCTGAG	alt_5784_new	18	24	20	15	10	6	28	14	19	5
TCGTGCCTCAATACTC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TCTGGCCTAGGTGAGC	alt_5784_new	17	21	14	14	41	14	31	13	33	10
CTAAGGCGAAGTACCA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TCCAACCTTAAGACGT	alt_5784_new	12	55	23	17	52	16	61	20	71	22
CTGAGTGGTTGAGGTC	alt_5784_new	2	1	1	0	1	0	1	0	2	1
TTTAATGCGACGGGAA	alt_5784_new	82	135	82	77	132	67	144	71	137	64
GTGAGTACGGCACTCG	alt_5784_new	35	55	47	41	58	29	50	27	53	26
GAGGTTCCCGTTTTTA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
ACACACTATTTCGGCG	alt_5784_new	13	26	17	15	30	12	27	8	27	9
CATTCGGGACAAAAAC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CTATTGGAATCGGTAC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
ATGCCTAATAGAAGTA	alt_5784_new	1	4	0	2	2	0	1	4	2	3
TTCCTAGCACTTGCCC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
GCCTACGGGAGTATTG	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TTTTGCACCACGGACG	alt_5784_new	17	28	24	11	25	16	17	13	19	12
GAAGTGCAATCATAGA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CTCCTCTATAGTCCAG	alt_5784_new	9	31	17	14	43	7	42	10	37	6
GCGCTCTGGTTGCGTT	alt_5784_new	20	54	28	20	64	28	56	40	59	28
TTGTATACTCCGCACT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
GCTCGAAAATGCTGCT	alt_5784_new	75	99	85	68	117	61	94	80	132	82
CCAGTACAGGCGTCAG	alt_5784_new	9	18	10	15	23	17	38	8	22	7
TATTCCTGAGCGATTA	alt_5784_new	33	39	49	38	43	37	51	22	62	30
TTAAAGAACATTTAAT	alt_5784_new	1	2	0	0	3	2	0	1	2	1
ACCCATACCGCTTTTA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TCACGTTCATACCCAA	alt_5784_new	28	38	25	28	58	18	32	33	41	24
ACGCTCTTGCAATATC	alt_5784_new	11	18	17	9	24	9	27	9	11	8
TCTTCCCAAGTGACTC	alt_5784_new	10	15	14	7	28	4	13	9	21	4
CAGCCTCCCTCCCTGC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TTAATAACTAGACATA	alt_5784_new	10	111	14	21	74	8	99	14	109	11
AGTGAATAGTCTTTCC	ref_5784_new	9	30	22	18	35	18	38	12	30	30
GTACTTTGAGTTCCTT	alt_5784_new	5	13	6	7	10	3	7	2	12	6
GCCGTCTATTGGAGTC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CCGTCAAACTTGTTAT	alt_5784_new	89	134	97	84	145	65	140	76	154	79
GCCCAGCTCACGAGTG	alt_5784_new	27	47	41	28	61	25	71	33	94	24
GGCGCTGCTGTGTATC	alt_5784_new	58	66	40	34	62	53	70	34	84	40
GCACATGATTGTTTCG	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TCTTTTAACGCGCTCT	alt_5784_new	8	9	8	6	8	5	11	4	14	10
TGAGCCTTTGAGACTT	alt_5784_new	14	45	24	15	37	18	36	26	29	14
TTGTTACCAGCAGATA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CACCCTTAGCTTTGTT	alt_5784_new	1	0	1	2	0	1	1	0	0	0
TATACGATGTGCTGGT	alt_5784_new	29	78	49	46	71	34	63	46	73	35
GATATAGCCAGCTTTA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TTTTTTAGTTCGCAAG	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TAGCCATCTTGGGCTG	alt_5784_new	0	0	0	0	0	0	0	0	0	0
ATCGCGTCGTGGTTGC	ref_5784_new	55	81	70	68	63	41	79	42	88	39
CAGATTAGGGACATCT	alt_5784_new	1	13	4	7	7	6	13	6	14	7
GATTTAGCCAGCTTTA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CGACCTTCGTCGTTAA	alt_5784_new	31	50	29	20	26	22	39	16	35	19
AAGTTAAGTTAGGGTT	alt_5784_new	51	79	54	27	74	34	85	23	68	45
GACTGTAAGTTGGGGA	alt_5784_new	9	24	19	15	24	9	23	11	25	11
GGGGGTAACGAGGGGT	alt_5784_new	6	23	13	19	24	12	23	16	20	10
TACTAACATCTTTTTT	alt_5784_new	15	19	5	12	16	7	14	13	21	7
AAGTATTGAAGAGAAT	alt_5784_new	11	24	19	11	22	7	19	16	21	14
TTACCGATGTGCGTTT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CACGGTTGGCTGCCCC	alt_5784_new	75	135	104	86	152	69	132	85	151	73
AGCCCCACACCCTCCC	alt_5784_new	49	57	47	47	49	39	48	32	77	29
CATAAGTAACATAGGG	ref_5784_new	89	142	111	96	155	64	152	75	144	68
TAAGAGAAAATCCCGT	alt_5784_new	6	7	1	4	6	4	6	4	8	6
CTTACGCTCCATGGCC	alt_5784_new	2	11	5	10	14	12	8	12	10	4
ACCTCACGTGTTCCCT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CTTCTCGCGCAACTAC	alt_5784_new	25	84	50	53	78	36	90	44	93	38
GAGTTCCATTCTCGGC	alt_5784_new	5	10	7	8	21	5	15	2	9	10
CGGGTAGTCATGATAT	alt_5784_new	9	24	15	8	24	8	22	12	21	6
ATGGACTTGATTAGTG	alt_5784_new	32	100	54	35	68	33	66	34	67	37
ACTAAAGCACCAACTT	alt_5784_new	116	208	145	132	220	117	239	127	242	133
TTTTCTTGGGGTTACA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TCCGGTGACCTAGCTT	alt_5784_new	9	25	12	7	11	11	14	11	16	6
CTGTCGTTCTAAAGTT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
GTTATGCGCAACCCGG	alt_5784_new	8	11	16	5	15	6	25	7	16	11
TTAGCACCACTGTTAT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CTGAACTAATGTTGAT	alt_5784_new	67	78	63	55	117	45	98	43	114	49
AGACGCCTTCGACGCC	alt_5784_new	7	8	12	9	13	8	11	10	16	10
GGTTTCGAACCTCGCG	alt_5784_new	54	101	69	60	126	60	103	46	98	41
AATCCTATATCGGGTG	alt_5784_new	9	15	10	7	17	6	15	11	18	6
GTGATTGCCCTCTCGT	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CGACCGTAACTGTCCC	alt_5784_new	4	13	7	1	12	4	14	4	16	2
TATCTGACGCTAGGTC	ref_5784_new	2	21	5	11	11	11	11	2	9	3
TCAACTGGATTAACGA	alt_5784_new	16	35	25	13	32	27	35	23	40	13
GAACCGGGTTAGGACT	alt_5784_new	14	21	19	17	33	13	33	12	32	18
TTATGCGTCCTTTCTG	alt_5784_new	5	8	8	13	15	5	8	8	19	5
CTTACAGGTGAACTCA	alt_5784_new	2	12	8	2	14	5	11	4	13	6
TTTTGGTACTTGCTTC	alt_5784_new	27	56	53	33	70	43	71	32	68	30
ACTTCTAGTACATTAA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
GAATAAGTAGTGTCAT	alt_5784_new	21	41	27	18	45	30	41	21	43	14
TGCGAGGCACCTGCTC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
ACCTTTAGTGTAATTG	alt_5784_new	12	38	26	15	41	24	31	8	37	13
CGGCGTAATTTGACGC	alt_5784_new	35	38	35	43	56	35	63	32	59	36
CTTATATTTACTATGC	alt_5784_new	19	38	27	23	33	25	40	30	47	17
TCGTTTTGAGTTAGGA	alt_5784_new	23	50	27	22	47	29	57	32	51	27
AGAACGCCCCTGTCTG	alt_5784_new	18	19	11	13	27	11	26	15	16	12
GGCGTGCCTTTAGTGC	alt_5784_new	30	91	32	33	91	36	64	19	94	39
TAATCGGGAGTGTGGG	alt_5784_new	17	34	33	14	33	16	24	18	39	17
ATTGAATAACTATAGC	alt_5784_new	34	65	55	30	63	50	73	37	70	36
TAAAGATTCGTTCCAC	alt_5784_new	10	39	24	12	37	25	30	9	38	9
TACGAGTCCTGTTTAG	alt_5784_new	5	10	8	7	12	10	12	4	10	4
AGTGACTGGGCAGATT	alt_5784_new	32	41	26	14	35	26	43	17	41	14
TGCACCGGCTAATTAT	ref_5784_new	17	54	22	16	62	26	49	18	41	25
GTGTTGCACAGAGCAC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
GTGTTGGTCGATGTCA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TTACATTTTTAGTTCG	alt_5784_new	25	33	21	23	26	23	34	14	43	19
ATCATAACTGTCGGCA	alt_5784_new	0	0	0	0	0	0	0	0	0	0
CTGGCGTGGTGCTTCC	alt_5784_new	0	0	0	0	0	0	0	0	0	0
TTTTGTGAAAACAGGG	alt_1364_missing	21	11	22	8	16	7	26	21	26	18
CTTGCTTCTTGTCGGC	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
AAAGCTTTGTTCTATA	alt_1364_missing	14	35	19	14	30	17	31	12	35	14
CATGTGTTATATTTCT	alt_1364_missing	125	166	145	114	161	105	145	117	157	92
TACCTGGCGTACCTTT	alt_1364_missing	4	6	7	8	14	5	13	2	17	4
GCGGTTCAACAGCGCG	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
TACTGTTCGTTGCGAA	alt_1364_missing	13	22	14	11	23	14	17	18	16	14
TTATTGGGTTGTTTAT	alt_1364_missing	87	93	86	69	73	79	106	73	108	77
TTGTAACGCGGCTTTA	alt_1364_missing	2	13	6	9	11	2	14	6	36	8
CATTTCATCTACATAT	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
TCATGACCGTACCAGT	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
GTCAGGAAGAAGTGGG	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
TCGAAAAGCGTCTGCG	alt_1364_missing	20	22	21	31	28	14	37	7	29	20
ACGGGGGTCTTCTTTA	alt_1364_missing	3	0	3	5	1	2	4	1	8	3
CGAGTGTTGGTGATGA	alt_1364_missing	16	17	8	12	26	10	23	9	27	11
ACTTCGTCTGCTTAAC	alt_1364_missing	22	20	22	14	36	11	26	16	35	20
AGCATCTAGAATCCAG	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
ATGACCAGGCGGACAT	alt_1364_missing	13	8	21	11	13	9	5	11	14	14
CAGTAATCACATTTGG	alt_1364_missing	11	15	8	6	14	5	7	18	16	4
TCAAACACGGGAGTCT	alt_1364_missing	121	184	176	134	193	127	186	132	193	97
ACTGTTCGCTCCTTTC	alt_1364_missing	15	26	18	15	16	12	30	14	23	12
TCCCTTTTGAACTACG	alt_1364_missing	22	32	19	27	31	24	26	24	44	17
ATATCCTCTCCTGTGA	alt_1364_missing	1	11	0	1	7	0	12	2	10	1
TGTGGTTAGGATCGGA	alt_1364_missing	14	21	30	22	23	23	19	18	34	16
AGTCCTATCTTTGAAA	alt_1364_missing	19	39	28	21	24	22	37	23	44	21
TGTTGTACACCTAGAT	alt_1364_missing	25	34	22	25	58	24	47	26	25	16
AATAGTCGGCGTCGTT	alt_1364_missing	26	19	25	17	29	18	38	14	27	15
AACTCTTATCATTTAA	alt_1364_missing	88	121	74	81	125	62	141	71	145	68
GGGCCCTAGTGTGAGT	alt_1364_missing	1	7	7	2	9	8	7	4	4	6
CAATCTTTTCACCTTC	ref_1364_missing	189	202	250	208	246	190	234	191	243	183
AAGGGCAATCATAGTC	alt_1364_missing	11	16	18	9	19	22	20	11	13	21
CCACAAAGCTGGGGCT	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
TTGCGATTATCCTGTT	ref_1364_missing	99	153	126	88	141	101	137	101	141	91
CAGAGGGTAAGCTAGT	alt_1364_missing	17	41	26	25	34	13	30	26	35	24
TAGGTCAGGCACACGT	alt_1364_missing	48	73	57	43	65	41	61	26	56	42
GAATGTAGGATCGTCC	alt_1364_missing	70	112	94	72	100	61	101	69	133	74
TCTCTGGAGTGCGGCG	alt_1364_missing	8	21	12	11	25	13	20	11	22	10
TTACTCACGGTGTATA	alt_1364_missing	18	35	23	17	37	21	47	19	59	10
TGTAACTTTTTGCTCT	alt_1364_missing	2	3	3	1	1	3	4	2	4	0
ACTCTGGCACCAAGGC	alt_1364_missing	90	132	106	82	146	104	120	90	136	81
TTTCGCGGAAAGTACC	alt_1364_missing	0	0	0	0	0	0	0	0	0	0
CCCCTCCCGATTGCGT	alt_1364_missing	8	23	35	18	19	22	23	17	19	14
TCTTCACTTGCCTTTG	ref_3943_reverse	116	66	145	131	53	111	80	100	72	132
TCTGCTTGTTACCTTG	ref_3943_reverse	25	38	22	24	36	24	55	27	55	22
GCTTAGACCGTCACCT	ref_3943_reverse	40	19	29	40	30	29	31	25	30	22
CGTTTTAATGGGATCG	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GATTAGAATTATATGA	ref_3943_reverse	48	32	54	58	30	44	36	60	36	48
ATGGCACTTAATTGGC	ref_3943_reverse	132	88	173	164	112	164	95	160	100	127
TTGTATTGTGTGTTAC	ref_3943_reverse	28	12	26	18	10	18	20	17	18	21
AGAAGGATCTACTCAT	ref_3943_reverse	57	39	98	58	46	67	56	72	43	80
TTTTCAATTTCGGACA	ref_3943_reverse	10	8	22	19	5	13	12	21	14	14
CTTGAGTATCACGCGT	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
AACGAATACACTATAT	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TCCATGTCAACTGTAC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GCTATAGGTTTATCAT	ref_3943_reverse	22	17	6	15	7	8	8	11	6	8
ATGTCAAAAACGATAA	ref_3943_reverse	28	33	53	43	28	42	30	35	32	46
TTCCTAGGGGGACCGT	ref_3943_reverse	49	31	45	42	33	48	32	35	37	29
CAACTAACGACATCGT	ref_3943_reverse	74	61	76	70	47	68	50	51	44	66
GATTCAATATCAGCTA	ref_3943_reverse	158	91	175	140	93	127	115	152	87	125
GGGCCAGAAACATAAT	ref_3943_reverse	118	86	131	118	90	96	77	94	73	111
ATTGGCGTTCATGAGT	ref_3943_reverse	62	39	69	57	33	62	60	70	52	75
CGAAGTTCCTCCTCGC	ref_3943_reverse	63	37	64	58	37	63	44	47	40	46
TGTCGCCTGTCCGAGG	ref_3943_reverse	71	46	82	60	44	69	57	45	52	50
ATATTTGCCATTCTCC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TTGATATTTTGACACC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTCGTTCTGCTCA	ref_3943_reverse	47	39	56	62	33	40	24	56	38	40
TACATAGTCAAGTCCT	ref_3943_reverse	9	3	3	2	4	7	4	1	5	5
TAACTGCTTTGTGATT	ref_3943_reverse	71	66	79	64	51	58	57	69	67	70
GAATGCTAACCTCCGC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCTTCCGGGGATT	ref_3943_reverse	58	35	69	57	27	59	40	64	39	63
TTCCTCTAGAAGACCG	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCCGCATCTTTTG	ref_3943_reverse	25	11	28	21	8	20	16	12	17	20
TGCTGCGGACAAAGGC	ref_3943_reverse	22	18	21	30	10	16	22	24	19	15
TATACTGACCATAGTA	ref_3943_reverse	156	99	196	152	111	158	114	148	117	153
TAGCTCGGAACTTCCC	ref_3943_reverse	98	73	117	79	73	74	69	67	68	87
TCTTCGTTTATGTACA	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
CCTGCTGCATCCCAGA	ref_3943_reverse	32	21	50	42	12	40	24	39	24	32
CATGGCTGGTCTCTTG	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTGAACTAGATGC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGATTCAGGCCTT	ref_3943_reverse	28	20	47	40	14	38	30	32	32	30
CAAGGTTGTTTATTAC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGATCATTTCCCC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GGCGCGAACTGTGGCC	ref_3943_reverse	172	64	205	148	102	166	104	136	96	146
GCCCTGGACTAATCAT	ref_3943_reverse	121	63	113	112	64	106	67	112	51	102
AATTGTGATACGCTTG	ref_3943_reverse	7	7	5	13	16	13	5	5	4	4
GACTGGTCTCCCCACT	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGATAGTCCCGGT	ref_3943_reverse	13	9	9	7	12	9	3	7	3	10
GACGGGCCAGTATGGT	alt_3943_reverse	96	60	81	91	61	91	65	76	60	65
TGTTAGCGTCATCCAG	ref_3943_reverse	41	20	55	54	31	44	32	62	33	46
CTTTCCGTGAATATAG	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
AGTTATGCCCCCCTCC	ref_3943_reverse	54	36	61	54	28	49	49	47	32	42
GCGGCTCTAATTCGAA	ref_3943_reverse	114	58	113	90	48	77	52	98	67	76
TGCGATTCGACGAACC	ref_3943_reverse	200	149	230	174	98	176	134	138	135	137
CTGGCTCGCGACATAG	ref_3943_reverse	51	26	62	58	36	44	30	45	38	36
GCTCTTCCACATAAGT	ref_3943_reverse	29	22	27	33	35	33	22	33	31	37
TACGATACTCTCGTAA	ref_3943_reverse	70	46	99	88	56	59	37	62	48	50
AGCACTAGAACACCCT	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAGTCCCGGCAGC	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGTATATGGAGTA	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTCTGGTTTAAGT	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTATCTGCCGATG	ref_3943_reverse	11	12	3	9	6	12	4	8	8	12
CAGCCGTGCCTCGGGA	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TCATCACATTGTGGGT	ref_3943_reverse	96	53	99	95	49	91	61	117	66	89
CCTTTTAGCGGAGAAT	ref_3943_reverse	68	66	103	76	54	71	51	73	69	58
TTGAGATCATGCAACG	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
TCCCACACTGGATTCT	ref_3943_reverse	25	20	53	28	27	33	15	28	24	32
CTTAGTCTCTCGCTAT	ref_3943_reverse	13	9	17	16	9	19	12	15	13	10
TTATTTCCAGGTCTGT	ref_3943_reverse	6	5	3	8	6	1	4	1	8	5
ATTAACTTATTTGTTC	ref_3943_reverse	36	20	40	43	25	37	27	49	22	39
AATGCCGACCTTGTGC	ref_3943_reverse	81	48	75	74	39	87	48	75	57	44
CGAGTCTCCGATACCA	ref_3943_reverse	134	78	155	132	91	133	98	138	62	111
TGTGTGTCGCAAGGAT	ref_3943_reverse	75	75	90	73	43	66	55	75	63	82
CTTTAACATCCCAAGG	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTTCATTCCTGGG	ref_3943_reverse	67	50	77	61	64	59	50	68	44	53
GGTGGTCCGATAGAAA	ref_3943_reverse	62	62	94	78	49	77	46	62	59	52
TATGGAAGCCTAAATT	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGTTTTCCTTCTA	ref_3943_reverse	3	2	11	12	3	3	8	9	0	6
TTGGAACAAGGGAAAC	ref_3943_reverse	27	9	21	13	16	21	15	19	19	16
TGGTGTAATATTATTG	ref_3943_reverse	85	61	86	61	46	70	57	70	49	53
GCCTTTGGCCCCTCGT	ref_3943_reverse	0	0	0	0	0	0	0	0	0	0
AGCAGGTTGAAAATTG	alt_6060_new	3	8	6	3	4	4	4	6	2	4
AAAGATGCTTTCATGC	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TCACAGCTGGCTCCTG	alt_6060_new	0	0	0	0	0	0	0	0	0	0
CCCTTCGATCACTGAT	alt_6060_new	2	2	1	0	0	3	1	1	0	1
GTCGCTCAATGCAAGT	alt_6060_new	301	225	340	277	237	266	237	278	222	264
AAGAGCCTCCAGTTTC	alt_6060_new	0	0	0	0	0	0	0	0	0	0
CGGATCTGATATTGGG	alt_6060_new	45	34	30	34	34	44	26	55	34	29
CCAGCCATTTTCCCTC	alt_6060_new	39	53	52	46	55	33	48	34	44	31
TGTATTTACTACTTAC	alt_6060_new	0	0	0	0	0	0	0	0	0	0
CTTAGTTACTCTCTCA	alt_6060_new	34	44	40	44	31	34	29	30	38	38
AAATGCAATCACTTAT	alt_6060_new	40	21	52	26	23	29	34	29	31	38
CCTTAACGATTGTTGG	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TCAACTCCGCAACGGA	alt_6060_new	27	20	13	22	14	17	17	33	20	16
TAATAGGTTCCTTTTC	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TAGTATTTCTACGTGT	alt_6060_new	38	31	46	26	34	33	29	52	45	38
CGTTGCTGTACGGCCA	alt_6060_new	11	8	9	6	8	8	3	13	10	9
CTGACCACTCTTCAGT	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TCCCTCCACGACACAC	alt_6060_new	30	15	41	19	12	23	25	25	31	27
TTAGCGCGCATTATAC	alt_6060_new	13	9	18	23	6	10	15	12	13	10
TCTCTTGGACAGCTAA	alt_6060_new	0	0	0	0	0	0	0	0	0	0
GCACTTGGGACATACT	alt_6060_new	0	0	0	0	0	0	0	0	0	0
AACACATTACTGACAA	alt_6060_new	23	21	31	37	27	18	30	21	28	16
ACTATTTGTATGATGG	alt_6060_new	8	16	17	20	19	17	20	15	18	18
ACGAAACGGTGCGTTT	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TGGATTGCTAGTTGTA	alt_6060_new	44	23	56	39	32	41	35	41	36	31
GCGCTAATAAGTTCCG	alt_6060_new	0	0	0	0	0	0	0	0	0	0
GTGCCTAAGGATAGTA	alt_6060_new	21	14	32	22	16	17	22	18	9	22
TCTGCTCCCACCTGCA	alt_6060_new	111	106	127	90	101	82	102	73	106	107
TAAGAAAAGGTGATAT	alt_6060_new	56	34	45	65	39	58	37	43	48	53
TTTTGTCTCCGACTTC	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TAGGTGAGTGCAGTTT	alt_6060_new	0	0	0	0	0	0	0	0	0	0
GGGGTACGTGAACTTT	alt_6060_new	23	17	26	35	9	27	10	19	21	18
CCTCCAGGTTACAGAT	alt_6060_new	38	50	75	62	47	55	36	60	38	50
ATCACGCTTCAGGTAG	alt_6060_new	0	0	0	0	0	0	0	0	0	0
GATCCTGAAATCGTGA	alt_6060_new	0	0	0	0	0	0	0	0	0	0
AATCTAGAACAGTTGA	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TTGCCGGGCCTCTAGT	alt_6060_new	17	10	15	12	7	11	9	13	9	16
ATGTATTCCGGTCTTG	alt_6060_new	36	39	56	50	38	39	41	38	31	37
GCCCGCTGTTACTGCG	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TTTGGAGCTCTCCAAC	alt_6060_new	2	0	0	1	0	1	0	1	0	0
CAGTTAATCTTTTCCT	alt_6060_new	57	45	94	78	45	52	40	53	59	80
ATAAGAGCATTTTAGG	alt_6060_new	45	54	59	58	45	53	44	38	46	59
GTATACAACCTTTACG	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TTCTCCCTGTCGGCAG	alt_6060_new	14	34	15	23	29	7	39	13	43	9
GTTACCCAGGTTTGAG	alt_6060_new	35	21	46	33	35	35	34	33	25	35
AGTCTAACTTAGCATA	alt_6060_new	30	25	31	34	10	26	24	15	34	16
ATCTAAGTCAATACGT	alt_6060_new	127	85	123	104	102	88	93	100	102	108
TAATGCTCAAAGAGAC	alt_6060_new	31	17	28	31	22	33	17	26	28	36
GAACCCACCAATATGA	alt_6060_new	493	435	637	513	397	466	471	443	439	435
CCCTGCTACACACCTT	alt_6060_new	79	108	84	84	122	64	114	78	154	61
GATTATGGCGTTCCCC	alt_6060_new	78	53	93	92	50	77	55	78	50	72
AACATGGTAACTCTAT	alt_6060_new	9	3	10	3	2	4	10	7	6	4
TGATACAGATTTCGTT	alt_6060_new	32	23	42	50	21	27	23	27	26	28
GTACGGCTTCCTACTG	alt_6060_new	145	120	164	145	112	118	114	150	113	112
CAGGTCGTTCCACCGG	alt_6060_new	57	38	69	59	46	68	38	56	36	48
GGTGTGGTGATAGTGG	alt_6060_new	71	52	89	93	47	62	60	76	60	50
GAGCTTGATCACAGTG	alt_6060_new	10	7	11	12	11	13	0	8	11	2
ATATTGTGTCTCTATT	alt_6060_new	48	26	34	50	31	26	43	28	22	35
TGCTTAAGGGTGAGGC	alt_6060_new	195	161	242	215	142	147	153	165	191	156
AGTGATTACTGTCGTT	alt_6060_new	30	48	54	46	27	36	39	32	34	34
GCATATATTGTGTCAG	alt_6060_new	31	21	32	34	23	27	23	31	34	24
TGACGAGAGGCTTCGT	alt_6060_new	31	24	44	34	11	23	27	34	29	28
GTCTCACCAGCGCACC	alt_6060_new	2	5	2	0	5	2	3	0	5	0
GTTGGCTCAACCCTTC	alt_6060_new	23	17	31	32	21	26	27	14	16	19
GGAATTTTCCCGCGCC	alt_6060_new	23	21	27	29	21	18	24	23	30	33
CAGGGCCCGCCGCCTT	alt_6060_new	93	77	124	92	64	93	69	76	78	93
CGACTCGCGTAGAGCC	alt_6060_new	12	22	28	24	17	15	18	14	29	21
GTGGTCGCAATAAGTG	alt_6060_new	40	33	85	54	50	61	66	58	51	41
CCGTGTGACTTCCGTC	alt_6060_new	16	15	14	14	20	11	23	20	8	11
TTACTGTAATCTGCTG	alt_6060_new	18	14	20	18	12	15	21	16	12	15
ACTCGTGATGGTTCTC	alt_6060_new	13	10	13	19	11	13	8	19	11	12
CGTTCGATGAGTAAAC	alt_6060_new	66	65	90	66	54	79	66	54	58	69
GTGGCACATGGAACGA	alt_6060_new	35	60	69	26	54	54	52	60	79	46
CTGGACATAGTTCATT	alt_6060_new	0	0	0	0	0	0	0	0	0	0
GCTTCGTAAGGTATAG	alt_6060_new	18	18	17	30	17	23	20	24	17	17
TGCAAATAACCTGTGC	alt_6060_new	185	149	240	203	182	182	180	182	187	188
TATTGTTCACAAGCTT	alt_6060_new	100	75	104	90	69	98	62	77	71	78
GTTTAGGATATGTTTG	alt_6060_new	75	70	93	75	73	78	71	81	79	62
CGAAGTTCAGGTAAAA	alt_6060_new	23	16	30	24	19	18	21	23	35	19
TGGTAACACGAGCTAT	alt_6060_new	12	13	17	22	10	13	13	16	13	16
CTTCTCCGTATTTAGA	alt_6060_new	48	36	52	58	26	48	53	31	37	48
TCTTGTGAGTACTTTT	alt_6060_new	25	10	22	14	16	16	16	15	16	10
GTCACTTCGTATCTCA	alt_6060_new	30	27	32	22	13	29	20	23	31	14
CGACCTGGCAGCCCTC	alt_6060_new	0	0	0	0	0	0	0	0	0	0
CATGATTTTTATCGAG	alt_6060_new	70	90	87	78	54	82	77	56	73	85
GAATCGTTAACCCTAT	alt_6060_new	0	0	0	0	0	0	0	0	0	0
AGGAGATGCTTCTAAG	alt_6060_new	73	52	104	108	60	77	72	84	56	72
GAATTTTTTTTTAAAC	alt_6060_new	129	123	141	135	106	127	127	123	113	126
TTCGATGCTCACGAGA	alt_6060_new	25	20	37	34	14	37	24	20	26	14
TGTGTTGTGCTTGGGT	alt_6060_new	30	11	25	17	15	13	12	15	15	19
CGCGGTAACTCATGAA	alt_6060_new	25	26	37	37	38	21	29	23	47	16
GGCCCCCCATGACCAT	alt_6060_new	90	59	99	98	82	99	68	81	74	69
TACTGTGGGCCGCTGG	alt_6060_new	15	18	21	16	11	15	9	13	13	16
CGATTACCCTCCAGAT	alt_6060_new	47	50	63	56	65	53	55	78	56	43
TATGTACTCATGCTCA	alt_6060_new	2	2	1	3	0	3	0	3	1	1
GCCTTACGGTTACTTA	alt_6060_new	7	10	6	14	8	9	13	12	8	4
TTCCGGACACATACGC	alt_6060_new	88	77	88	89	66	90	78	61	80	45
CACACCTTATAGTGTC	alt_6060_new	0	0	0	0	0	0	0	0	0	0
TATGAGCTAGCGTCAT	alt_6060_new	47	28	50	33	28	36	36	34	28	49
GTTTACCCTTGGTGGC	alt_6060_new	46	27	50	33	25	38	24	34	41	16
TGTGGGTCGAGCAGAT	ref_4308_missing	52	56	43	36	67	52	63	52	74	42
GCAAGCGTTGATCCCA	ref_4308_missing	29	43	40	33	50	28	54	26	46	33
TGACCGATACACTTAG	ref_4308_missing	18	25	12	11	24	12	16	15	22	6
TAGAAGGGTTGCACCT	ref_4308_missing	0	0	0	0	0	0	0	0	0	0
ATACTCGCCTTTCAGG	ref_4308_missing	22	48	32	28	48	34	43	30	50	24
ATCCTTTACAATCAAC	ref_4308_missing	39	58	48	46	56	45	53	52	49	39
CATCCTAGCGTCTGAC	ref_4308_missing	81	88	83	57	105	66	102	48	107	42
TCGAGTCTGGCTCTGC	ref_4308_missing	6	28	19	6	24	17	30	11	18	13
ATCGCGCTTAGGTCTC	ref_4308_missing	0	0	0	0	0	0	0	0	0	0
TGACCGATACACTTAA	ref_4308_missing	0	0	0	0	0	0	0	0	0	0
GCATGAAGGTTAATGG	ref_4308_missing	63	88	69	50	79	65	86	56	100	58
CAACCTGGTTCTAGGG	ref_4308_missing	0	0	0	0	0	0	0	0	0	0
TTTCGACCGTACGTCT	ref_4308_missing	0	0	0	0	0	0	0	0	0	0
TATTGTGACAAGTTCA	ref_3406_reverse	35	25	37	29	32	27	24	49	33	31
CTTTAAAGCCGAAATC	ref_3406_reverse	32	38	37	27	24	22	23	26	27	29
GCTCGAATTCTTTAAC	ref_3406_reverse	13	17	7	15	14	17	20	17	20	16
GCTAAGTTCGGCAAAA	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCTATCCCGCGT	ref_3406_reverse	46	42	60	43	54	37	48	48	46	37
AGGGTACACGTTTGCC	ref_3406_reverse	10	9	22	15	11	7	15	18	18	17
CGGAATATGACCGGGA	ref_3406_reverse	110	79	135	122	97	114	88	93	103	86
GCATTGGCAGGTACCG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
AGATAGGCGGTAGTGT	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GCACCAATTTCGCGTC	ref_3406_reverse	27	30	18	34	20	24	26	23	18	22
GGCCTGTAACTCGAGA	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CATTGATGTTACCATA	ref_3406_reverse	65	54	85	65	76	64	56	60	71	69
AGGCTTGCGATGTGGA	ref_3406_reverse	7	9	4	7	11	10	12	3	6	6
TGACTCCCGGCTTCGA	ref_3406_reverse	3	5	5	6	0	0	1	2	3	5
CGACGGTCCTCACGCG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTGTAAAGCTTTT	ref_3406_reverse	64	70	88	61	50	68	65	54	73	61
AAAGCGCCTCGGTGTG	ref_3406_reverse	46	33	44	34	45	37	34	33	38	28
GATGGTGCCATCTTAG	ref_3406_reverse	24	20	27	20	24	16	10	26	26	15
ATCACCCGAAGTACAT	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CGGCTAACGGGACTTG	ref_3406_reverse	159	188	238	194	205	175	211	176	231	169
TGGTGCTCGCCCATGT	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCTTATTCCCGCC	ref_3406_reverse	69	67	110	68	66	59	94	98	101	87
GGCCCTCTTACTCTGT	ref_3406_reverse	8	2	11	10	12	9	15	7	10	8
TAGGGTTCTGATGTTT	ref_3406_reverse	91	72	98	98	84	73	72	80	96	94
TTAAGACCTAACGCTT	ref_3406_reverse	15	30	21	23	16	11	20	29	20	15
TATCCGCTGACATAAG	ref_3406_reverse	53	38	71	55	39	51	43	39	53	46
GATTTCAAATCATCGC	ref_3406_reverse	26	9	20	27	12	18	16	27	13	22
CATCTGGAATGTAACA	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCGACGTGCAGT	alt_3406_reverse	46	161	58	53	169	46	183	41	161	55
CCGACGCATGCACATT	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GCAACGATAGCGCTAC	ref_3406_reverse	33	40	52	43	42	40	31	30	27	33
CCAGGTTTTCTTTTGA	ref_3406_reverse	196	183	229	231	209	181	197	210	205	194
GGTCAGCACTGGCAAT	ref_3406_reverse	32	24	33	31	27	42	30	28	55	37
AGCTCCTAATGCCATA	ref_3406_reverse	27	17	25	33	17	13	18	25	18	22
TCTCCGCAGCTGAAGG	ref_3406_reverse	21	22	26	22	14	13	24	23	30	12
GCGTTTTACTTTCTCC	ref_3406_reverse	1	5	0	4	3	0	3	1	1	3
TTGTGAATAACTTGCT	ref_3406_reverse	22	14	13	9	13	10	12	15	7	18
CCCTTTTCGCCTTTAC	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
AAACACCTACCTCCAC	ref_3406_reverse	11	19	18	6	22	11	21	13	24	5
ATCTGTACGATAAACG	ref_3406_reverse	25	32	39	25	43	32	39	38	27	35
GCTAAGTGCCAACTCG	ref_3406_reverse	6	8	3	2	6	10	5	11	7	4
TTGTGCCCTTTGACCG	ref_3406_reverse	78	53	91	74	57	66	70	63	55	70
GCGGACTAACTCGTTG	ref_3406_reverse	17	34	31	15	32	19	23	19	23	10
TGTAGTCGTTACGGTT	ref_3406_reverse	1	1	2	0	3	2	2	5	1	2
TTCTTGAAAGGACACC	ref_3406_reverse	22	29	23	20	26	24	24	16	23	15
CCCTCTGTCTTCGGGG	ref_3406_reverse	12	27	10	11	20	11	22	8	17	11
CCTATTCAATGCATGT	ref_3406_reverse	57	64	65	78	60	72	69	58	53	65
CATCATCGGGGTATGC	ref_3406_reverse	16	13	21	8	13	15	16	15	18	12
TACTATACTTTGCTCT	ref_3406_reverse	9	19	6	7	11	13	7	11	11	9
CCTTCGGTTCAGTACG	ref_3406_reverse	16	28	14	17	32	8	28	27	37	15
CGTGTGTGTCTAAATC	ref_3406_reverse	29	37	43	38	40	45	45	38	39	31
TGTGTCGATCTCGTAT	ref_3406_reverse	154	178	223	160	183	145	170	151	164	122
TAGTCTTAAGGAATTG	ref_3406_reverse	25	30	37	20	25	16	23	23	32	13
GACACCAGTCCTTTCC	ref_3406_reverse	45	39	42	53	38	37	41	39	36	34
CTTGTTATCTAGGTCG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTAGTTCGCCCTT	ref_3406_reverse	26	39	35	26	41	29	25	31	40	23
TTTCAGTGTGACTAGC	ref_3406_reverse	15	24	22	15	16	17	20	15	22	14
TGTTGGATGGCCTCTT	ref_3406_reverse	31	44	32	27	23	30	20	26	46	30
ACGTTCTTTGTCGCTC	ref_3406_reverse	32	30	46	21	30	44	32	29	27	24
TGGCGTAGGTGACCTC	ref_3406_reverse	7	4	9	1	7	6	5	6	5	9
CGGTATGGCTAAAGCG	alt_3406_reverse	64	43	48	50	43	35	59	41	49	33
GAGTGGTACGAGTTCT	ref_3406_reverse	38	39	39	40	47	55	45	48	42	40
TGACTGGGTGGAGCGA	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GATAGACGCAACCCCT	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CACGGATATTAGCACA	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGGACCGCGGTCA	ref_3406_reverse	53	44	80	54	55	76	58	61	56	51
TTGCTAATAGGCGCAT	ref_3406_reverse	38	44	46	35	48	34	69	32	49	29
TTGTAAAGTTCTCGGC	ref_3406_reverse	17	18	17	16	15	16	20	14	21	13
ATGTCCTCAGTGCTAT	ref_3406_reverse	54	48	57	26	44	37	34	41	46	24
CTACCGTCGCATTTGT	ref_3406_reverse	75	61	67	72	73	74	66	50	62	67
ACACACAGAAGGCTCT	ref_3406_reverse	74	71	94	72	63	72	64	68	78	67
CGACGCATTTTGACGC	ref_3406_reverse	0	0	7	0	3	4	2	3	2	1
GGTGACCCTGTTTCTG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CAAGAACAGCTTTCAA	ref_3406_reverse	21	25	35	26	16	18	31	32	30	21
TTTTCCACTCCGTTAT	ref_3406_reverse	75	80	91	80	84	77	86	69	95	78
TGTTCTTGTATCCAGT	ref_3406_reverse	58	67	96	95	74	94	73	72	80	83
GGTGATTTCAATTCAT	alt_3406_reverse	108	98	140	106	106	133	133	118	128	107
AAGAGATTATTATGGA	ref_3406_reverse	21	23	16	12	15	14	19	18	18	13
GTCCAGCTGGAGGTGC	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GGTATCCCCGATGGCT	ref_3406_reverse	43	33	42	37	36	53	41	39	37	45
CGCCTGCAAATCACTC	ref_3406_reverse	50	36	49	36	31	33	19	56	37	42
TCTTTCATCGTCTTGC	ref_3406_reverse	9	17	9	11	17	17	10	4	16	10
CTGTTCCTCGTTTAGT	ref_3406_reverse	296	322	297	297	304	271	301	270	342	309
ATTATGAGGCTCTTCT	ref_3406_reverse	101	89	127	86	69	92	82	116	96	103
GAATACCCGCGCTATC	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GAAGAGTCCGTCTGCG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
CATTATTCGGATTGTC	ref_3406_reverse	2	0	0	3	2	0	4	4	6	2
TCGGCCTGATATGAAT	ref_3406_reverse	47	53	53	58	48	41	52	64	51	54
TGGTGTGACTGCCGAA	ref_3406_reverse	32	25	32	20	38	22	33	21	23	28
GCTCGCTTCCACCAGT	ref_3406_reverse	22	54	42	41	57	26	46	44	68	32
TGTTCCTTTCCTTGGT	ref_3406_reverse	11	13	15	13	11	17	13	16	23	11
ACTGGGAAAAAAATGA	ref_3406_reverse	38	29	75	47	33	29	49	39	55	41
GAGGCCCCGGCCGGAA	ref_3406_reverse	36	41	34	53	33	28	35	37	31	37
GGGTGAATAGAATTAT	ref_3406_reverse	45	39	61	49	54	52	60	42	50	29
CAAGTGGATCAGTATT	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTCCAGACACATG	ref_3406_reverse	4	6	15	12	7	11	16	15	11	9
CTGTATTTAGGTAGCC	ref_3406_reverse	16	15	20	15	20	12	23	19	17	31
AATTTAAGCACCATTC	ref_3406_reverse	7	8	22	10	12	9	9	15	12	15
ATGTCAGCCAAGTTGT	ref_3406_reverse	10	10	17	19	14	12	19	25	26	20
CACGCTTTCTTTAAAG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
TTTATCTGACGAATAA	ref_3406_reverse	94	67	107	77	85	82	71	89	77	101
AATAGCATGTCCCAAG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
ACACCAGGACTACATC	ref_3406_reverse	9	1	6	8	5	12	8	9	13	8
ATCGGTAAGCCCTCCG	ref_3406_reverse	12	13	14	16	11	11	11	16	11	14
TCGCGGAACGTGACCG	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GACTCCCCGGTTACGT	ref_3406_reverse	1	4	0	0	3	0	4	1	1	1
TTTTACAAGCGTATTA	ref_3406_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTGTATTCCTCTT	ref_3406_reverse	56	43	72	57	51	42	31	49	52	43
GGTTTTTTTATAAAAA	ref_3406_reverse	30	26	33	40	31	32	24	31	25	24
ACGTAAGTTCCTATCT	ref_3406_reverse	38	24	31	39	28	29	39	20	34	35
CGTTAATATCGAGATC	ref_4079_upstream	23	13	32	25	10	28	16	27	11	22
GTTGTATAATCGACAT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAGGTGCATAACG	ref_4079_upstream	150	102	157	147	85	137	84	133	95	151
TCGACGGTGTATTCCC	ref_4079_upstream	94	63	90	83	64	72	61	73	76	91
CCGGGCCATCCTTATC	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTGGCCCGTTAT	ref_4079_upstream	298	143	300	283	163	268	136	275	179	249
CGGCCCTCTTCTATAG	ref_4079_upstream	38	13	29	18	14	30	9	24	14	21
AGTGCCTAGTTTGCTC	ref_4079_upstream	8	12	16	14	13	14	8	5	13	8
CCGAACTGGTTGTCAT	ref_4079_upstream	13	10	19	7	11	15	9	9	26	16
TGGCCAAACAGCTGCG	ref_4079_upstream	49	37	51	61	33	50	23	60	48	53
GCGCTCGCTGATGTGA	ref_4079_upstream	11	10	29	24	8	20	9	14	14	15
ACGCGTTTCCTCCCGG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCCGGGGGTGCA	ref_4079_upstream	92	41	104	98	48	87	43	80	54	82
CTATATTGCGTCACGG	ref_4079_upstream	12	5	11	6	15	7	6	7	11	16
CTGTACATTAATCGTA	ref_4079_upstream	363	152	379	341	196	301	173	293	185	312
GGTGCTACTGAGTTGC	ref_4079_upstream	354	242	400	341	216	311	247	335	228	312
CTTGCGGGTTTAGTGG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTTTTATTTACA	ref_4079_upstream	9	5	14	20	9	15	10	17	9	8
AGTCTGAACGCCTTGT	ref_4079_upstream	22	29	47	37	26	21	13	36	16	31
ATGTGGTGGATACCAG	ref_4079_upstream	11	8	14	9	4	6	5	3	4	12
ACCTCGGTTCTTCAGT	ref_4079_upstream	5	2	6	2	1	0	0	4	6	6
AACCGCCAATACTGTT	ref_4079_upstream	41	26	42	36	24	42	24	34	27	29
TCACGATTTGTTGTCC	ref_4079_upstream	84	32	97	86	37	59	24	54	37	57
ATGCTGTATTAAACAT	ref_4079_upstream	75	33	70	71	31	53	42	51	31	45
GTGATATCGCGTCAGA	ref_4079_upstream	2	2	3	5	6	4	3	2	3	4
GGCATTGTGGTAAAGT	ref_4079_upstream	82	34	78	79	56	49	60	71	45	57
CCCCATACGGTCGTTG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
CGGTACGACATCCCTT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GTGAGTTTGCCACAAC	ref_4079_upstream	179	103	244	191	112	181	117	189	136	153
TCCGTCTCCTCATAGT	ref_4079_upstream	21	24	20	10	17	19	17	19	10	19
TGGTTACGCATCAACA	ref_4079_upstream	134	82	160	159	86	124	73	119	84	119
TTAAGATGTGGATGCG	ref_4079_upstream	17	9	17	16	4	21	10	13	14	19
GGTCCACGTCAGTTCA	alt_4079_upstream	31	12	37	30	30	23	32	27	28	17
CCAACTAGCGTCTAAC	ref_4079_upstream	17	14	31	20	11	21	28	26	25	33
TAATGGAGTCCACTTA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGCGCCGTTGTAG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTGTGTGTAACGC	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
CACTCCTCTCATGTCG	ref_4079_upstream	8	21	11	10	23	8	17	9	30	9
ATCTTTTAGTATTAGG	ref_4079_upstream	104	59	120	97	64	95	61	91	72	101
ATAGCTCTGGCTTTGT	ref_4079_upstream	51	27	40	64	29	52	43	33	27	49
CTTATCGTGTGAATAG	ref_4079_upstream	104	83	133	114	86	118	72	106	79	86
GCCAGTTTCTCTCTAT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGGGACTCCTACG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
CAAATGCGGTATCAGA	ref_4079_upstream	87	56	101	70	44	91	52	78	36	77
TCATCTTAGTGACAGG	ref_4079_upstream	144	92	163	179	93	161	109	142	94	119
CAGCGTTTCGGAATTG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
AACAAATGTGGCTGGA	ref_4079_upstream	89	37	106	90	36	86	33	69	44	82
TGCATCGGAGATCAGT	ref_4079_upstream	24	15	23	19	8	18	11	11	13	19
CATTCGCGTGAAGTGA	ref_4079_upstream	62	37	82	62	46	63	31	55	51	85
GCATCTCTCGCTTGAA	ref_4079_upstream	77	65	100	89	47	76	61	91	47	75
TCCTCTCATGGGTTGC	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCTCATGTGTTAG	ref_4079_upstream	1	1	5	2	2	0	0	2	2	1
TCGAATCACTCCATTA	ref_4079_upstream	86	57	116	125	56	83	62	98	59	86
TTCGTCTCCCTTCTCG	ref_4079_upstream	241	131	252	250	129	206	154	204	154	220
TGGAATTATCGCAGCA	alt_4079_upstream	89	60	104	88	51	94	53	83	56	70
CTTCGTGGTGCCTAAT	ref_4079_upstream	40	9	34	31	21	26	17	29	23	26
AATTCTGCGTGGTTTT	alt_4079_upstream	29	20	26	13	5	12	8	20	10	16
TCTAACCGGGCCGTGC	ref_4079_upstream	5	11	4	10	6	4	9	8	8	6
CATTGTTCAGTCAGGA	ref_4079_upstream	32	17	28	23	15	19	29	24	16	20
TCGTTGTCGTCCTTGT	ref_4079_upstream	173	108	213	151	99	164	120	173	93	130
CCTTGCTTCGACTGTC	ref_4079_upstream	37	26	35	40	35	32	32	35	46	30
GTATATTCACCATTAA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCTTGGTGCGTAT	ref_4079_upstream	17	20	23	24	14	19	14	22	16	20
TAAGGGTTATCTGGAA	ref_4079_upstream	2	0	3	3	1	1	3	2	2	2
TGAGCCCGTCACTAGG	ref_4079_upstream	57	23	58	57	38	59	36	61	44	46
TTACACCTTCTTCGTC	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
AGCCACGTCTGCTAGT	ref_4079_upstream	24	26	26	25	19	19	18	23	15	21
ACCCGGTGCTTTCAAT	ref_4079_upstream	23	20	35	28	16	18	28	15	30	13
TATGCAATTGTAGCTT	ref_4079_upstream	25	19	25	21	9	29	14	22	26	23
GCTCCGTATCCTCGGA	ref_4079_upstream	58	46	68	59	35	64	37	55	45	45
TTTGGTTTCTGATATG	ref_4079_upstream	55	30	52	43	32	37	29	53	33	38
CAAGGTTTATTTGTGG	ref_4079_upstream	68	31	95	43	39	45	37	46	48	55
TACACCCTTTACAGAT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
ACTACTTGCGCCTCGG	ref_4079_upstream	56	35	78	68	50	44	28	52	30	36
TTGCGCGCGTCTCGGC	ref_4079_upstream	63	35	66	62	33	61	26	53	28	68
CTTGGCCCGCCGGTCT	ref_4079_upstream	39	26	71	54	43	50	40	48	37	39
GGCGTAGCTGAACGGC	ref_4079_upstream	59	25	80	69	23	67	18	60	18	64
TGCTTGCCTCCGTACT	ref_4079_upstream	108	70	144	141	69	132	85	109	77	114
AGTCTGCGCTATGATA	ref_4079_upstream	183	100	240	161	102	216	106	203	120	153
CCTGCATTATCAGGGA	ref_4079_upstream	137	71	162	146	78	143	92	122	69	133
CAGGGAGTTTTTTCCT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTGAGCCAGCATG	ref_4079_upstream	42	42	68	43	34	30	33	39	26	41
TTTAACGATGCGTTCA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTATAGTTCCGG	ref_4079_upstream	6	2	13	8	1	4	2	3	3	6
GAGCACATTATGCTTG	ref_4079_upstream	76	32	77	58	37	56	31	46	32	41
CTACGCCACAGTTCTA	ref_4079_upstream	24	9	15	15	9	17	8	26	12	25
CCTAGATCGATTCTCG	ref_4079_upstream	47	28	47	43	36	44	22	30	26	38
CTACGAAAGAGTGATA	ref_4079_upstream	96	71	151	112	50	90	61	86	62	76
TTCGGATACTGTTTCT	ref_4079_upstream	218	128	277	198	113	207	151	230	159	165
CTTCGCTCCACGAGTA	ref_4079_upstream	59	44	76	72	54	55	39	49	57	40
TTGTGCCAGACCAGGC	ref_4079_upstream	340	209	455	353	216	365	227	323	246	297
CCGTTGAAATGAACGT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCACTGATTGCTT	ref_4079_upstream	9	6	19	7	5	12	8	11	20	9
ATGTGGAACGTAATTA	ref_4079_upstream	254	156	302	262	149	246	172	253	172	222
GTTCTATGGGTAGTGG	ref_4079_upstream	55	45	78	67	41	60	35	68	40	58
GCAGCGTACTTGTCAA	ref_4079_upstream	4	3	7	4	1	8	2	6	6	6
TACTTCAATTCCCCAT	ref_4079_upstream	8	10	14	13	8	4	5	7	4	8
CCGTAACTCCGGAGCA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
ATGCATCCTCACGTAC	ref_4079_upstream	14	24	24	26	19	19	19	13	20	27
ACTCGAGCCTGTATGG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GCCAAGTGCCCCTCTA	ref_4079_upstream	4	5	2	8	14	7	11	9	7	7
GGTTATGTCTTATTAC	ref_4079_upstream	1	0	1	1	1	0	3	2	2	3
ATTTCAAGTGTGAGGA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
CTAATTATGTTATCTT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGACCTTCAGTAGTGA	ref_4079_upstream	64	29	79	69	36	65	28	54	42	52
TACACTTTGCCGTGAC	ref_4079_upstream	3	8	8	3	5	9	2	5	12	5
TACAGGCACGTCGTAT	ref_4079_upstream	8	4	4	2	3	5	3	7	4	15
TATGGGGCATGTCATT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGGTGCCTCTTTT	ref_4079_upstream	81	65	120	102	62	76	55	72	66	97
ACGTGCTATCGTGGTA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTTCTTAGGCTT	ref_4079_upstream	92	53	100	94	47	89	55	94	49	90
GCGCAAAGCATAATCT	ref_4079_upstream	52	26	43	42	21	42	34	30	22	36
TCACGTATCCCTCTGT	ref_4079_upstream	34	19	15	35	37	27	31	25	32	33
ATGGATTGAACTCAGA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCACTCATTACAA	ref_4079_upstream	120	81	164	111	95	136	124	124	106	113
TCGGTACGGCTTGTTA	ref_4079_upstream	75	52	89	88	35	80	44	81	50	69
CCTCGAAGCGCAAGCC	ref_4079_upstream	62	22	50	50	28	41	29	36	15	48
GTGAGGGTATTATCTG	ref_4079_upstream	27	15	20	18	23	25	13	15	8	18
GCAGAGTGCTTCGGTT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCCTTTCTACATC	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
AGTGCCCATCGGTAAT	ref_4079_upstream	16	20	43	36	15	37	21	34	20	20
GAACTTGAATTGTTCT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTAAACGGAACAA	ref_4079_upstream	6	5	12	10	1	7	3	7	3	2
GGGCCATGGATCCTAC	ref_4079_upstream	150	66	176	148	65	154	84	141	82	131
TAAAGTTGTAGCATGA	ref_4079_upstream	72	59	104	67	49	76	65	67	35	89
CCGTCCGGAATGTGTT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGTAAATTTCTTACAT	ref_4079_upstream	56	25	53	51	25	45	21	35	29	40
GATTATGACTCATTAC	ref_4079_upstream	48	17	55	52	19	49	16	53	22	36
AGATTTGTGAGTGAAT	ref_4079_upstream	62	28	41	51	50	48	40	44	33	44
GGAGTATCCATGCTTG	ref_4079_upstream	15	6	26	12	9	17	13	23	15	14
GTTGTTAAAGTCTGTA	ref_4079_upstream	220	136	270	243	133	203	136	222	158	202
TCATACTCTCGTAACC	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GAGGGTATGTGCTTCA	ref_4079_upstream	55	34	72	69	33	68	37	48	42	41
GGGCGGCTCATAGTCG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCTCATATAAGTG	ref_4079_upstream	16	19	47	26	13	18	21	20	11	15
TTGCTTACGTCAAAAA	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCGGAGCCGAATT	ref_4079_upstream	148	78	131	122	80	102	90	103	86	96
CAGAGATGACCCCGTA	ref_4079_upstream	16	19	24	28	6	13	11	22	18	12
CCGGGCTCTAGCTCGT	ref_4079_upstream	29	24	34	19	17	14	23	11	16	17
TAACCCTCCCGGCATC	ref_4079_upstream	296	150	352	280	148	299	156	250	177	247
TCTCTTTGCAAATAGA	ref_4079_upstream	68	47	89	80	49	53	43	58	52	59
TGCCCAGTTGGTGGAT	ref_4079_upstream	25	15	39	23	10	15	20	24	16	31
TACCGAATCAGACCCA	alt_4079_upstream	15	32	27	31	40	21	29	17	34	27
CATCAACACCTTTGCT	ref_4079_upstream	104	74	121	105	56	78	40	91	63	84
AAGTTATTGTTAACTC	ref_4079_upstream	99	48	113	91	37	92	51	103	47	78
AACGCACTGTCCTAAT	alt_4079_upstream	102	80	104	102	83	81	80	82	70	81
GACTGATTGTACGCAT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTCAGTGTCGGGG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTCGCCGAGCTTT	ref_4079_upstream	3	5	2	0	1	0	7	0	1	1
GTGATTCCACGTTTAT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCCTGCTTTATCT	ref_4079_upstream	66	29	111	72	32	72	42	62	47	83
GAACCATGCAATCCTT	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTTCTAGTCATAT	alt_4079_upstream	246	150	306	275	174	201	159	248	154	248
TTATCCTAGAATGCCA	ref_4079_upstream	73	62	90	76	38	90	67	55	49	50
GGTTAAGCGGAAACAG	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAGGCTAATACCC	ref_4079_upstream	0	0	0	0	0	0	0	0	0	0
GCCCAGGCGCACCCGA	ref_4079_upstream	73	28	84	64	20	66	35	51	23	58
ATTGGTTATGAAGGGC	ref_4079_upstream	178	122	247	207	105	187	116	195	134	209
GTTGTTTTTTCCATGG	ref_4079_upstream	46	33	34	40	24	43	23	37	30	43
GTTAGTGATCGAATTT	ref_4079_upstream	62	43	53	60	38	57	36	53	31	62
GATGTGCGGGCACAAC	alt_4079_upstream	130	174	194	147	117	113	147	127	171	116
TCCGGGTTTCGTCGAT	ref_4079_upstream	15	9	17	16	12	9	10	10	22	15
GCTTGCGAGTAAGTCA	ref_4079_upstream	53	34	81	52	44	60	35	62	24	67
CTTAAGCTGCGGTTTT	ref_4079_upstream	191	152	238	206	158	167	183	200	169	160
CAATCTATGCGGCTTT	ref_4079_upstream	44	15	41	45	26	39	18	47	20	47
AGGTTGGATTTCCAAT	ref_4079_upstream	242	172	299	269	156	256	136	202	138	203
CTCAGGGTGGCGGCCC	ref_5931_new	63	59	59	72	83	79	83	62	72	70
TTTATTCGCTCTAACC	ref_5931_new	30	37	32	19	19	28	18	16	15	22
CCAATTAATTCCCCAA	ref_5931_new	40	32	55	45	45	37	54	34	58	41
GCATCGGGGGGCCGCG	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TGCAACCGACTGGCGT	ref_5931_new	42	48	52	71	78	38	77	52	60	42
TTCGTGCGGGTGCAAC	ref_5931_new	9	7	12	10	8	8	10	8	18	5
TTATTTCCCTTCACGT	ref_5931_new	25	43	37	21	46	34	23	25	30	18
TTCCATTGTTTCATGT	ref_5931_new	17	32	20	15	25	18	37	11	29	14
CAGCTCCTCTGCGGTA	ref_5931_new	7	6	2	13	6	3	12	4	5	4
GAGAATCGAACCATGC	ref_5931_new	42	50	51	56	56	46	55	40	61	47
ATCAGACTAACTTTTG	ref_5931_new	26	16	25	19	21	12	19	16	29	10
TCGCCCGCCTCACGTC	ref_5931_new	14	21	16	9	19	11	18	8	20	12
TGCTGACTCGTGAGTA	ref_5931_new	0	0	0	0	0	0	0	0	0	0
GTCGTCTGTATGGCAT	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TTAGCTCTATAGTCCC	ref_5931_new	24	20	20	21	32	21	33	19	40	18
AGATTCTGTAGGCTCG	ref_5931_new	41	63	91	63	89	47	85	71	78	55
GGGACGCCCGACACGT	ref_5931_new	0	0	0	0	0	0	0	0	0	0
ATATCCTGGGTTTGCC	ref_5931_new	24	23	32	34	25	24	35	27	41	26
AATTTCGGGAGGTAGA	ref_5931_new	23	34	25	23	17	17	48	26	45	14
AGTCCTTCATTTATAT	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TCATTCTCCATGTGCG	ref_5931_new	4	19	16	6	32	13	17	4	24	12
GGCTCGCAGGTTGGCT	ref_5931_new	0	0	0	0	0	0	0	0	0	0
CTTTCCGTTGTGTATC	ref_5931_new	17	29	18	11	32	29	30	13	26	14
ATCATACGTGTGTAGG	ref_5931_new	134	145	162	139	188	170	199	117	175	131
GCAGTCGACTTACTGG	ref_5931_new	28	39	22	24	40	27	36	22	23	11
TTGGAATAGAATCATC	ref_5931_new	0	0	0	0	0	0	0	0	0	0
CGGACGATTAGCCGAG	ref_5931_new	107	171	149	112	166	118	174	114	163	95
GGGGCTTTCGGTTTAT	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TGGACTGGCTATATGA	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TCGGCGTTGTTGTTGA	ref_5931_new	104	108	97	70	133	90	121	75	124	70
CTTGATCTATAGCCAG	ref_5931_new	46	99	80	67	103	70	125	78	95	38
GACTGAGTGCCAGCTA	ref_5931_new	46	69	76	57	92	41	61	53	71	42
CAAGCTTCGGCGGCCG	ref_5931_new	1	2	3	5	5	3	2	5	10	1
CACGATTTCAAATATT	ref_5931_new	0	0	0	0	0	0	0	0	0	0
CATCATGTTTCTTACC	ref_5931_new	5	20	5	2	28	2	27	7	32	2
TGCACTATACTTAGTA	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TATGCTGCTTTTGGTT	ref_5931_new	15	22	24	26	34	14	24	21	32	10
CCACTCTGTGGGTACG	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TCTGGGCCGATATTTT	ref_5931_new	3	4	8	2	7	3	9	7	8	9
TTACACGAACGCCTAA	ref_5931_new	0	0	0	0	0	0	0	0	0	0
CACGCTCTCTTTATCC	ref_5931_new	0	0	0	0	0	0	0	0	0	0
GTTGCTTGCCTCTGCA	ref_5931_new	5	8	10	4	4	5	6	5	14	4
ATCGATTATACCACGA	ref_5931_new	4	23	24	20	14	16	27	18	23	19
AGACTATAAATACTAC	ref_5931_new	37	32	38	30	35	38	80	34	47	21
AGGTATGGGTTGACTT	ref_5931_new	3	6	2	2	3	3	4	4	9	3
ATATCTGCTATGCTTC	ref_5931_new	13	16	29	21	17	13	21	15	18	12
GAGGCGTTGTCCGTCC	ref_5931_new	0	0	0	0	0	0	0	0	0	0
GTCTACTAATTCCTAC	ref_5931_new	4	8	6	5	8	3	11	5	9	8
TGGCAACAAACGTACC	ref_5931_new	5	12	5	4	10	10	5	3	9	5
GTAGGATTTCCCCGAA	ref_5931_new	12	16	20	24	16	17	23	11	25	17
CTCTTCTTTGGTTACT	ref_5931_new	25	33	51	34	40	20	43	30	35	36
GCAGAGGTACTTCCAT	ref_5931_new	16	22	28	23	33	16	29	23	23	24
ACACGGTGCCACCCTT	ref_5931_new	64	115	99	73	123	75	132	88	102	80
TGTCTACATCTAATAA	ref_5931_new	5	11	8	4	6	6	8	3	6	9
ATGTACCCCTCCTAGC	ref_5931_new	69	79	65	55	77	52	90	40	82	37
CAGTGTGCAAATTCGC	alt_5931_new	41	59	50	33	66	32	70	34	68	26
ATTATAACGTAGGGGC	ref_5931_new	80	74	87	76	84	60	93	66	77	78
CCAACATATCATGTTA	ref_5931_new	6	7	6	2	9	5	4	4	5	9
TGCTGAATTGCCGCTA	ref_5931_new	39	36	38	37	39	40	37	31	50	30
CATCGGCATCTACGAC	ref_5931_new	17	20	18	22	31	20	21	16	26	25
GGGACACGCGGAGTTG	ref_5931_new	0	0	0	0	0	0	0	0	0	0
GGTCGGCGCGCACCTT	ref_5931_new	9	39	25	22	27	20	25	12	32	11
GGGATTTTCTATAGGA	ref_5931_new	3	6	3	5	1	3	1	5	2	5
TTTGTAGGGTCTTGGC	ref_5931_new	3	5	3	3	16	2	12	7	9	2
CTTTCAATGACGTATT	ref_5931_new	15	4	26	21	7	14	19	8	21	17
ACTCGGCAGTCACGTG	ref_5931_new	0	0	0	0	0	0	0	0	0	0
TCTGTTCGGGGGCACA	ref_5931_new	11	2	8	2	4	4	3	3	6	9
ACCTGGTCTGCTACAC	ref_5931_new	9	10	3	4	9	4	10	4	5	1
GGTAGTAGTGATCCCG	ref_5931_new	70	77	72	65	99	67	86	63	75	51
TTCTTCCCTACGATGC	ref_5931_new	32	44	27	25	46	25	41	34	48	30
TGTAGCAAGTCAAACC	ref_5931_new	16	32	22	22	24	20	23	17	36	22
TTCATCGTATATCTTG	ref_5931_new	14	16	15	5	14	12	11	8	9	5
CTCCGGTCGGTCGTCG	ref_5931_new	13	31	33	12	46	13	35	15	50	17
CTCCCGTTCCTTAAAG	ref_5931_new	0	25	2	1	25	1	25	3	20	2
AGTGAGGTGAATTTGT	ref_5931_new	38	41	40	31	43	36	54	27	56	35
GCAAGTCGCTTTGTCG	ref_5931_new	3	9	6	11	7	3	4	4	11	1
GAAAGACCCCAGATGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGCAGTAGGGATCTGG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CTCTTCATGACACCCG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGGAATAGAGATGCGT	alt_2077_missing	27	34	38	22	26	25	36	34	32	27
AATATTCCCCCCAGAT	alt_2077_missing	9	6	9	6	10	4	11	2	15	5
CGGGATTTGATACAGT	alt_2077_missing	14	18	19	9	22	10	19	7	14	16
CGGCCCCGTTATTCGC	alt_2077_missing	6	6	6	4	7	8	8	5	13	6
AATAAAAACCCGTTAC	alt_2077_missing	6	5	3	6	2	0	9	3	9	2
AAACGTTGCTCTTCCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AGCGTAGCCCGTCAAT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CATGACGTTTTCACGC	alt_2077_missing	9	4	13	5	7	4	7	4	7	6
TTGCCATTGTTTAATT	alt_2077_missing	27	25	31	19	40	32	53	29	53	23
TACTGGTTTCGTTTGA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TACACTTACATCCTAA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTACAGTATTCGTATG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCAACGGGCAGGTTCC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CACAATTCTCCCAGAT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTAAAAATTTCCCGG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGCAACTCCCTGTTTT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTGTCTTGCTGGGGGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACGATATTTGTCGTAA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACTTTCTATTCTGTTA	alt_2077_missing	4	11	8	9	9	11	8	8	8	10
ATCTGACATCCGGTCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CCGATATGGCACTTTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CGGTAGAAAACTTCCG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AGTGGGTGGGCAGTGT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ATTCGGCTTGTATTCA	alt_2077_missing	0	2	1	0	0	1	0	0	0	0
TTACTGTGGAAAGCGG	alt_2077_missing	1	7	4	4	6	1	2	5	3	6
GACACACTTTAATGCA	alt_2077_missing	4	8	5	4	9	5	9	3	2	6
GACTCCGTGCTAGCCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTCCACCTAAACCTCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTGTATGTGACCACCG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTGCACGCCCCTTAAC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AATCCTGGCCTCGTAT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AGACGTTGGCTTTATA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AGGCCTGTTCGCTGAT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AGGTTTCGTAACCATA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACTATGTGTGTTTTCT	alt_2077_missing	1	17	6	5	9	6	9	15	8	9
ACACGGGGTTGTTCCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACCACCGATCACGCTC	alt_2077_missing	0	0	0	0	1	0	0	0	0	0
GACCTAAGCGCCATTT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CAATCGTCAAGGCTCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCCACGTTCCCTTGTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CCGGTTATGTGAAAAT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CAATATGGTCAGATGG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACGCCACTTTGACCAA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGAATGTCATTAATTG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTTGACCGGTGTGAAC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CGTAGGGGGTTGATTG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GACGCCCGTCCTTGCG	alt_2077_missing	2	10	6	6	6	5	9	10	9	6
TTGAGTGGAATCGCAC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GCGGTTGGCCACGGCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GCAAGTCGGATAAGTT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CGAGGCTGAAGTTACA	alt_2077_missing	12	17	14	18	21	9	26	20	27	13
TTTATGGCAGGCCGGT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTCTTTCGCGTGCATT	alt_2077_missing	4	1	6	6	5	4	6	7	7	3
TTTGGTTACTGTCTCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AACTTAGTGCGATCTT	alt_2077_missing	20	9	20	6	22	13	22	9	20	4
CGTACTGTTATTTTAG	alt_2077_missing	1	13	4	5	5	7	6	5	4	5
AAGGCGCCCTGTAGAA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCTTGACTACTGTATT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CTGTTGTCTTGGAAAT	alt_2077_missing	11	30	15	20	24	15	24	17	19	9
CATTTGGTATCGTGCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTCCAACCGTTGCGTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ATTGCTTATCACCCTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GCGCATACAATCACCC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GGATCCAACGTATTTG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CTAGTTATTTACCTTC	alt_2077_missing	2	6	0	0	3	1	3	0	1	1
CGGCCAGGTCAGCTTT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGCTCTATCTACGCTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCGACACGTGCAGCTG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTGTCATCCTAC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGATAAATAATAATTT	alt_2077_missing	13	15	26	19	17	10	29	22	19	8
ATAGGTATGCGATGTT	alt_2077_missing	13	10	13	11	19	4	8	7	13	6
CATCCCCATCAGCATT	alt_2077_missing	3	2	4	6	8	1	3	0	6	1
ACCTTACATTTTCGTC	alt_2077_missing	35	36	28	28	40	19	38	22	37	24
ACAGTACTTCTACGAT	alt_2077_missing	9	24	12	14	33	12	20	14	27	18
TCAAGCATTTGGCGGT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GCGTGAGGGCCAGGTT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CCGTCCTGTCTAACAG	alt_2077_missing	2	13	4	2	5	6	16	2	10	2
GCGCACCCTCAAGTTG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGAGCCCTATGCTTAT	alt_2077_missing	20	43	29	27	49	18	49	15	44	32
ATTGCGCATTCAACCT	alt_2077_missing	11	15	24	15	11	11	20	13	34	14
GCTTCTTTATTTTGCT	alt_2077_missing	0	2	2	2	1	1	0	0	0	2
CTGTCCTCTACTCGAG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTAATCAGTGTC	alt_2077_missing	2	10	6	4	6	2	2	5	2	8
GGCTGAACCGAAGCGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTTGGGTGTGTCTTTG	alt_2077_missing	0	3	1	1	0	0	0	0	2	1
CTTAGGATTCCTGCTG	alt_2077_missing	0	0	0	0	0	0	0	1	0	0
CCCCCTTGCTTAGGAA	alt_2077_missing	16	6	14	5	10	7	10	6	10	11
CGCGGCTAAGTCACTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCGACTCGGCTTCCCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTATTAAGGTCACATA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TATCTACTGTTAAGGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACCTGAGTTGTGATTT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CGCCTGGTTGCGTTTG	alt_2077_missing	3	9	8	3	6	8	7	8	5	5
GTATGATGCATTAGTG	alt_2077_missing	2	10	6	0	3	2	3	2	3	1
TGAAGGGGGTTCTTCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TACGTTTAGGGTTTGT	alt_2077_missing	12	18	17	11	19	17	12	7	18	17
TTCCTCTAATAATCGT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AATTCTTTCCTCTTTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCTAAGGTACATACCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTCAGTACATATTCGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GCTGTTAACAAGTTGA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTCTGCTTTCCTGCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GATGTGCGTGGCCTGA	alt_2077_missing	17	32	23	11	38	26	38	15	27	11
GATTTCATCCAATGAG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTCAATTGCCTTTGA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GATGTCCACAGTTAAT	alt_2077_missing	13	17	15	11	6	18	19	10	20	11
CCCTTCGTTCCATTCG	alt_2077_missing	4	8	15	4	5	5	16	2	10	4
AGTGCTCGCAATATGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACTTCCTTCAAACCTG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CTGAATGTAAATTCCA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTCTGTTTACTCCTCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCCCAACTTAAATTCC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CCGCTAACTCCTACTT	alt_2077_missing	5	25	10	17	7	9	32	12	27	6
AGCCTGATTCACTAAG	alt_2077_missing	8	16	4	6	10	5	17	2	19	4
TGATTTCACCTTCCGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTCTGCTTGGCCCCGT	alt_2077_missing	2	5	0	0	3	5	3	4	2	2
CATTATGCGCACTCGG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GGTTCCTGAGCTCACT	alt_2077_missing	7	8	6	5	10	9	12	6	11	6
CCCTGCATCTATTTGT	alt_2077_missing	3	11	4	8	9	6	6	10	12	2
AGGGTAGAGGTTTTAT	alt_2077_missing	4	7	5	1	7	1	7	7	6	2
ATAACCAATCTTGTCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TCAGTGTACTGCCAGT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AAGATCGTCTGTGGTC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ATTCAGTGATATCCAT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TAATCATTTCGCGCGG	alt_2077_missing	5	12	21	15	4	9	18	8	15	8
ATGAGTTGTTAGCTTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AGCCGATCTCTTGGCA	alt_2077_missing	0	0	1	1	4	1	8	2	1	4
CGTTACCCGGCGTATC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACTTTATGTAAACGAG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTCCTTCTAAATCTA	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTTGCGTGACTATTCG	alt_2077_missing	5	2	6	13	12	5	8	3	9	9
CCGGATTAATCAAATA	alt_2077_missing	15	16	33	24	19	19	24	18	29	19
TCCGGTTTTAGGGCAC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACGACTATGGGCCGGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CCACTGTCGGGCCATT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TTAACGGGTGCACACA	alt_2077_missing	7	17	14	7	12	9	19	6	12	9
TTTACTATGCATGATA	alt_2077_missing	15	27	32	25	38	22	38	21	33	17
GTTCACCTGAGTCCGT	alt_2077_missing	11	8	7	3	11	6	9	6	15	2
TTATAACAAATATTTC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACGAGGGTTTTGGCCT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTGCTCAGAAATCCCC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGTGATGGAAACCGGG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CCCACTTTTAGGATTC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACAACTCTTCGGCTCC	alt_2077_missing	4	16	6	9	21	12	18	5	15	6
TTGTCGCCTTCGTTGC	alt_2077_missing	7	22	15	5	9	7	18	6	14	5
ACATGGAACGTGATGC	alt_2077_missing	27	27	44	22	21	30	31	16	41	17
TATTTCCTATTTTATT	alt_2077_missing	24	36	12	19	23	15	26	22	26	14
GGGCCCGCCGCAACAG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
TGGAAGGTCTCGAAAG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
GTTCGGGGTCATTCGC	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
ACTATATTTCTTCTAA	alt_2077_missing	6	12	16	10	27	11	17	9	17	12
ATGCGTTGTTGTCGTA	alt_2077_missing	2	1	5	2	4	8	13	7	7	2
GAGATAGTTTTTTCCG	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
CGGGACCTAAATATAT	alt_2077_missing	0	0	0	0	0	0	0	0	0	0
AATTACAGGGAAATTT	alt_2077_missing	4	8	9	5	15	6	12	5	7	8
CTTATGACGTTGAGTC	alt_2077_missing	3	8	7	7	14	3	15	3	18	5
CTCCTTCTTCATATTT	ref_3022_reverse	70	34	78	80	40	62	31	54	38	58
GCTTGCGTTTCGCCAG	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TCATGTTGGTTCCCTG	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGACAATTTTGAA	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTTTTGGTTGCGT	ref_3022_reverse	3	2	5	0	2	3	3	3	1	1
AGCCTGACACGCCCAA	ref_3022_reverse	158	109	162	182	133	133	128	160	138	132
CGCGACTGCCAGTTCG	ref_3022_reverse	138	56	139	148	80	117	82	120	63	106
TTTGAGCAGCCTACAT	ref_3022_reverse	60	27	101	91	23	59	32	72	36	64
CGTGTTTGTCCAGTCT	ref_3022_reverse	102	42	107	91	44	74	49	75	55	71
TCGTATTGGCACACAC	ref_3022_reverse	107	66	171	117	56	117	72	103	64	124
AAGGACTGTGATTGTC	ref_3022_reverse	56	35	69	60	35	56	38	50	49	46
GTAGGAAGACCTGCGC	ref_3022_reverse	465	234	510	447	244	404	252	403	228	411
CTAATCCCTTTCACGC	ref_3022_reverse	48	17	42	53	11	43	27	56	24	59
AAAGTTATAGGCAGGC	ref_3022_reverse	3	1	3	3	1	0	1	0	2	2
GCAATGCTGCATGTAA	ref_3022_reverse	94	49	117	105	42	90	37	74	51	77
GGGCTTCATTTACCCG	ref_3022_reverse	10	9	25	13	12	16	10	15	8	11
AGATACCCGTAATCTC	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGACCTATCGCGT	ref_3022_reverse	39	13	35	37	12	30	21	23	29	30
CCCAACCGGCTGAGTG	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTACTGGTATTT	ref_3022_reverse	45	20	74	54	28	39	37	48	27	30
AAGCAGTTTTATGAAA	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTTTCGGGCCAAT	ref_3022_reverse	49	32	57	52	34	58	29	44	31	39
CTTTTGGCATTACTTC	ref_3022_reverse	57	32	71	69	33	53	44	59	56	43
TAGCTCGGCTATGTAA	ref_3022_reverse	516	295	629	549	257	506	283	369	328	457
TGGGTATCGTGCGGGA	ref_3022_reverse	29	16	47	29	16	33	10	24	18	31
GTTAACTTTGGCTACA	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TTAAAAAAGGCAATTA	ref_3022_reverse	50	25	48	63	15	40	19	48	26	38
GTTAGCATTGACACTT	ref_3022_reverse	72	51	69	79	45	62	42	60	50	53
ACTGGTGCCTCTGCGA	ref_3022_reverse	160	73	176	169	87	159	80	155	92	152
CACGATTACTTATACG	ref_3022_reverse	35	24	49	37	23	47	37	40	18	32
CGCCTATCAGGTTATT	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTGATCTATCCTC	ref_3022_reverse	0	1	0	1	0	0	0	1	0	2
ACGTCATGTTAGAATG	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
GATAGCCCGCTATTGA	ref_3022_reverse	1	0	3	0	0	0	2	2	1	3
GGTCTAGTTTAGCTCC	ref_3022_reverse	165	100	195	152	97	140	95	149	92	154
ATCGAAGATGGGGCGA	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTGACGCTGTGGC	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGACATGCCCCAC	ref_3022_reverse	27	24	38	25	13	18	15	18	12	25
TATAATATTGTCCTCA	ref_3022_reverse	94	38	100	74	38	84	41	58	44	72
ATGTTAAGTCGGTCCG	ref_3022_reverse	119	58	147	130	65	123	77	125	87	87
ATAGTCTTGACTGGCG	ref_3022_reverse	81	30	88	82	53	75	39	88	38	62
TGACTGGAGAACTCCG	ref_3022_reverse	129	44	150	102	49	107	65	118	73	103
CAGCTTCTATGCACCC	ref_3022_reverse	38	22	61	61	26	52	35	50	24	45
AATAGTCACCTTAGTC	ref_3022_reverse	35	20	35	28	21	21	12	11	14	26
CACTGCCGTAACGTAA	ref_3022_reverse	27	13	21	34	10	33	21	24	14	22
TAGTCATGGGAGCCCG	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCGCTTGTAACCG	ref_3022_reverse	41	23	51	48	18	42	21	45	16	37
CACCTGGGGTTTTGAT	ref_3022_reverse	17	17	25	31	9	19	17	26	19	19
TAACATGGTAGTTGTG	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TTACTCCCCGGATCTT	ref_3022_reverse	5	26	4	5	19	3	29	4	34	4
ATCGCTCACTTCAATG	ref_3022_reverse	15	4	9	4	7	12	6	5	6	8
TGTCATAGCAGATACT	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
CGTCATTTCTCTAATA	ref_3022_reverse	97	46	107	120	43	88	49	91	53	68
TCCCGGGTTTGTCCTT	ref_3022_reverse	33	24	32	33	13	37	17	19	21	26
TTTCTCGCGACAGCGT	ref_3022_reverse	40	28	41	38	31	41	15	31	28	40
GCACTATACGCCCTCA	ref_3022_reverse	4	1	0	3	0	5	3	1	1	1
CGGCATTTGATGACTT	ref_3022_reverse	27	15	18	22	8	14	6	16	6	18
GATCGCCGTTAAGATG	ref_3022_reverse	50	21	62	52	34	56	29	49	28	52
GGACTATATGTCTTCC	ref_3022_reverse	108	56	133	110	59	87	62	97	63	92
TCCTGTCTTATGGGGC	ref_3022_reverse	70	31	76	55	24	41	32	50	20	58
GATCTCCTTACACCGG	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTCGGAGGTTCTC	ref_3022_reverse	113	51	129	153	78	106	76	97	66	91
CTTCACCGTTACATAA	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
TCATATCCGCGGGAGT	ref_3022_reverse	23	16	30	28	17	19	7	25	11	25
ATTGCTTGTCTAATCG	ref_3022_reverse	61	27	59	60	30	60	28	53	40	49
GTGACGGTTTATTGCA	ref_3022_reverse	181	92	211	199	85	172	102	155	81	155
CCCAGGGCAAGCGTAC	ref_3022_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGTCAACTCGGCG	ref_3022_reverse	21	16	28	23	13	20	9	28	4	22
CCAGTGCAAATTACGA	ref_3022_reverse	82	207	110	72	198	71	258	66	235	55
GTTTAATTCGTTCCAT	ref_3022_reverse	190	114	274	218	110	203	120	178	114	200
ACCTTGTAGATAACCA	alt_903_negative	136	12	140	160	9	110	5	141	10	121
GCGCATGGCACCGCGA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TTGTAACGCGAGTAAT	alt_903_negative	246	16	315	265	20	232	21	224	16	240
ATTTCTACTCAGGTAT	alt_903_negative	876	58	1009	923	84	807	69	839	68	742
GATGGGTTCGCAAGGG	alt_903_negative	78	5	136	99	8	93	13	89	6	82
ATTATGTTCTGCAACC	alt_903_negative	694	55	843	673	81	667	71	688	61	589
GTGTGCTGTGTTTCAC	alt_903_negative	98	9	146	130	8	88	4	119	10	91
ATTATTCGGCTCGGCG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GGTTCATTTTATATGC	alt_903_negative	798	76	934	830	69	726	59	758	65	698
CGGCTGCGTTGAAGAG	alt_903_negative	1231	111	1522	1214	102	1191	105	1147	113	1106
TACGCCTGCAAAAGAA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CAAATACTTCTCGACG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GACAAACCTTTATTAA	alt_903_negative	1923	149	2435	2070	197	1828	190	1885	153	1814
ATCGGGCCACTAACTC	alt_903_negative	206	13	208	180	14	170	14	195	15	164
TCGGCCAGCGCGAGCC	alt_903_negative	1222	101	1508	1313	78	1229	118	1149	98	1152
AATCGCAGACGAGGCC	alt_903_negative	123	5	168	131	11	132	12	102	14	132
AATATTCTTGGCACCG	alt_903_negative	2014	166	2568	2190	167	2023	168	1890	160	1852
CATTCTCCATCGAGCC	alt_903_negative	726	60	808	742	72	615	46	677	54	635
CGTACTTGTCTTGGGG	alt_903_negative	553	35	675	604	46	527	50	571	45	486
TTGCCTCAGGTATATA	alt_903_negative	951	76	1102	990	78	906	102	909	68	854
TCTAGTTGACTCTACC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GTCTTGGACTCGTGCA	alt_903_negative	665	47	832	717	70	674	63	679	50	627
AGCCCTTGTTGTTTGT	alt_903_negative	170	11	176	191	14	155	17	158	22	147
GGACTAAACGCCCATC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TATGATTGGGTGGACG	alt_903_negative	781	74	917	850	66	778	73	807	76	695
CAGCTCCTGCAGAGTT	alt_903_negative	671	64	821	701	57	657	65	622	58	625
TCCACAATTCTATGCT	alt_903_negative	636	53	660	634	76	509	62	567	52	526
TTCCCTCTTTGAGAGT	ref_903_negative	753	53	900	734	63	750	80	672	60	673
ATCCCACGACGTGCCT	alt_903_negative	37	10	29	19	2	20	4	25	10	29
CCCGCTCCGAAAAGTC	alt_903_negative	435	39	584	511	44	408	48	515	51	425
TTTCGGGTCTTTTATC	alt_903_negative	1260	115	1525	1374	103	1304	102	1116	92	1054
GGCATGCTGGCATTAC	alt_903_negative	218	13	279	241	17	211	12	214	14	195
TCTGCTACGCATGACA	alt_903_negative	1149	109	1313	1172	137	1062	149	1030	125	925
TGCCGGTGTATAACAT	ref_903_negative	3125	243	3808	3285	253	2986	259	3016	254	2630
TTGGAGATGTTATATA	alt_903_negative	535	34	660	553	44	524	42	464	49	446
TAATGCCAACATCCCG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TAAGGCAACATCGTAT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CTTGAGTTATCTTTAT	alt_903_negative	1023	96	1275	1088	83	993	89	939	92	882
GTTTCGTTGCGCCTTG	alt_903_negative	707	48	937	811	75	775	64	734	58	702
ACATGTCCATAGCCAT	alt_903_negative	516	41	612	543	57	505	57	499	33	444
AAGATACTCAATTAAT	alt_903_negative	1617	117	1986	1695	116	1613	131	1539	125	1375
AGATTTGGTTGTACGT	alt_903_negative	547	40	698	506	42	531	67	498	58	494
AGACAGGTGATCGCGC	alt_903_negative	883	69	1045	926	61	898	89	796	78	729
GAGGTCTTTGGCCTTT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GGTATTCTGAGGGTCT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TATGTAGATCTCGAGA	alt_903_negative	884	79	1061	999	80	882	72	854	70	870
ATCAGTGTCCAGCTGT	alt_903_negative	1488	130	1917	1667	139	1602	158	1513	122	1334
TATGGCTCAGGATTGG	alt_903_negative	1044	61	1219	1066	79	974	81	1014	75	877
GCTATCGCGTACGTTC	alt_903_negative	1303	112	1589	1473	111	1377	111	1249	126	1247
CCGGAGTATCTTGCAA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GCTATCAGGATTGGTC	alt_903_negative	504	61	581	450	46	401	67	447	59	404
TCTTCTGCGGCCGAGC	alt_903_negative	2307	214	2798	2429	187	2224	232	2143	218	2108
GGGGGACAAGCTCGTT	alt_903_negative	1537	110	1931	1626	135	1494	116	1483	138	1332
CTTTTCGGCACAACAA	ref_903_negative	4317	364	5336	4455	376	4195	421	4039	384	3760
AAAATTGACGCTCAAT	alt_903_negative	738	62	935	747	50	669	56	692	54	678
GCATTCCAGCTGCCAA	alt_903_negative	307	17	385	306	28	298	23	297	34	294
CTGCTGCATCTTAACC	alt_903_negative	315	33	390	299	27	315	31	265	37	266
GGCGACGAGCGCGGTG	ref_903_negative	591	37	684	602	42	528	40	535	42	504
GCGCAACCGCTTCCGG	alt_903_negative	1117	105	1394	1238	97	1175	98	1088	104	1033
CCTCTATTCGATTTAG	alt_903_negative	472	36	539	468	25	451	42	430	43	395
AGGCTACATGCAGTGC	alt_903_negative	1644	121	2013	1741	147	1571	146	1600	120	1465
ATCGGCAGCGTCTTCC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
ATCGAGTAAAGGCATC	alt_903_negative	3688	284	4444	3779	280	3426	304	3454	300	3145
CTTGGCGCCTATCGCA	alt_903_negative	1538	103	1362	1162	127	1101	129	979	126	1117
CTGGTCTCGCATCTGC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GGGGTGCGCTGTAGGT	alt_903_negative	545	39	744	531	34	523	37	488	39	494
TAACTATATCCCTTTT	alt_903_negative	702	44	772	702	37	679	46	605	38	615
GTTGTTTCTGGATTGT	alt_903_negative	461	53	564	455	65	476	60	450	58	375
GTAGCGTTTACTCGGT	alt_903_negative	3	4	5	1	9	4	8	0	11	2
TATTTACACTTTCTTA	alt_903_negative	2815	199	3175	2797	197	2452	220	2513	195	2369
GTACCTTGCCTATATA	alt_903_negative	461	45	519	473	31	413	47	386	40	381
TTGGATCTAAGTAAGG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CCAGTTTTTCCATACA	alt_903_negative	394	47	524	453	31	427	36	448	48	368
GCTTCTGGGACGCTAG	alt_903_negative	4204	332	5136	4347	345	4032	394	3946	328	3708
TACGTTCATATCTTCA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CCCGCCTCTTGCTTTG	alt_903_negative	718	55	815	766	55	660	65	634	69	657
CAATCGCCCATACGAG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GGCAGGCCACTCACGG	ref_903_negative	5419	430	7279	6400	434	5764	477	5929	413	5343
GATCCAACAATCTAGA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TGTTGAGGTCTTGTAT	ref_903_negative	2088	193	2564	2224	193	2206	205	2115	196	1918
TCTTGTTATCCTCAAT	alt_903_negative	423	40	483	442	35	413	34	424	40	383
TGCACCTGCCCCGCAT	alt_903_negative	129	11	172	133	11	105	10	122	14	122
TATCCACGCGAAGGCG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TTCTGGGAGTTTAAAA	alt_903_negative	1237	93	1466	1434	103	1258	105	1290	104	1156
GGTCCGCTTAATGTAG	alt_903_negative	914	78	1168	1023	71	861	94	870	86	810
ACGTGGCCTCTAGTGA	alt_903_negative	90	8	85	81	8	63	6	78	5	82
ATGAGCCCATTTGAGT	alt_903_negative	406	30	478	403	27	395	31	390	30	412
CGCTTTAATGCTTTAA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GGCACCTTCACATCTG	alt_903_negative	512	24	610	563	37	463	34	475	53	494
AATTCGTCTCACTGCC	alt_903_negative	292	19	373	383	22	282	15	270	32	299
AATATATATTCGCAGT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CCGTTGACAATCAAGG	alt_903_negative	580	50	707	668	44	615	52	550	51	549
CGCGTACTCTCAAACA	alt_903_negative	405	32	421	388	41	332	36	346	30	320
TCATGCTCGCCCGCTT	ref_903_negative	325	33	433	375	19	335	21	335	38	315
TATTGATCGACTCTGT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CACTGTTCGATAAGGG	alt_903_negative	415	39	527	457	38	369	42	425	44	410
GTTGCGTTACAATTCA	alt_903_negative	114	5	150	151	10	128	13	125	13	132
GCCACAGTGCACATGT	alt_903_negative	170	13	279	226	25	211	17	204	22	212
ACAGACCAGTCATGAT	alt_903_negative	528	59	604	503	52	498	45	456	37	445
GCTCTCATTGTTAGGT	alt_903_negative	1871	172	2113	1904	179	1715	164	1715	164	1641
CTTCCGATCAGATTCC	alt_903_negative	401	31	385	362	33	308	53	305	35	344
GATAAGGGCCAGTCTG	alt_903_negative	591	36	713	615	36	598	33	561	54	558
TAGTATTAATGAGGCT	alt_903_negative	1277	84	1606	1350	105	1295	96	1208	90	1104
GCTAATGTTTCCATCG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GTGTATCAAAGGGTTT	alt_903_negative	3379	265	4230	3577	285	3354	250	3177	277	3011
ATATGTGTACCGGCTG	alt_903_negative	466	35	560	471	45	437	41	439	48	389
TGCACACACTCACGCC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CGGTAAAGAATGCTTG	alt_903_negative	1033	77	1291	1102	78	926	89	934	76	912
TACTGAGCTGACGGAT	alt_903_negative	758	42	891	735	49	774	60	582	43	663
TATGAACCGCGCTCAT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CCCAACGATGGATCTT	alt_903_negative	697	54	879	788	77	720	41	696	65	629
GGCGCTTTCCTCCGTT	alt_903_negative	965	104	1367	1152	112	935	117	1072	100	939
TATTCGTCCAGTTAGT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GGGGATGGACACCACG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
AGATAGCTGGCCCCTT	alt_903_negative	2197	160	2804	2409	170	2114	216	2166	139	1985
GCCCAATATAGTTCTT	alt_903_negative	8923	755	10986	9852	847	8541	855	9011	843	8354
AAATGTGATGGTTAAT	alt_903_negative	1394	99	1636	1491	110	1298	104	1377	116	1245
TTTGGTCTCTCGGTTC	alt_903_negative	47	1	39	27	0	29	2	35	4	34
TGACTGCGGTGGACAT	alt_903_negative	68	6	98	84	6	75	4	66	6	56
GCTTGGTTTAAAATTT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CTTATTAACTACTTAA	alt_903_negative	93	1	110	106	6	69	6	90	6	80
ATAGTTCCTTCTAAGC	alt_903_negative	18	25	22	10	21	11	10	16	30	13
TATCTGACACGCTAAT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CGCCTCTTTGACAAAC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GCGAGATTATCTATTA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
AGCTGCTACTCCCGTC	alt_903_negative	47	13	103	94	14	60	17	96	12	46
ACACCAATCAGGCACT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TATTTAAATTCTCTAG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
AAATCTTGTCCTAATG	alt_903_negative	338	17	404	358	24	315	31	342	28	281
GCCTTACGGTGGATGT	alt_903_negative	2417	173	3011	2527	193	2349	202	2404	184	2210
CATTCAGGTCCTGGGT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GTGGCTTATCGGCTAC	alt_903_negative	743	76	832	672	60	660	56	702	73	654
AAGCGTCTTCTAATCA	alt_903_negative	2108	155	2594	2206	177	1956	172	1867	174	1861
CAATGATTTCCCTACC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
TTGTGGGGTTAACCTC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
AGGGCTTCATGCGCTT	alt_903_negative	6165	503	7697	6905	463	6144	493	5921	567	5601
TGTGCCTTAGATAATC	alt_903_negative	648	52	792	654	58	582	61	610	42	571
ACTTAAACAAGGCAAG	alt_903_negative	1107	81	1356	1194	87	1122	92	1101	80	1075
ACTTCTGTGTCTTCGA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
AGCTATTTGGCAAGTC	alt_903_negative	0	0	0	0	0	0	0	0	0	0
ACCGACCAAATCAGTT	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GCCTCATACCTTGTTT	alt_903_negative	438	42	560	480	31	446	50	358	43	406
CGGTATCGGGATGTTA	alt_903_negative	678	55	818	717	55	665	62	644	54	591
CGCCCTGTTGTTGCGG	alt_903_negative	0	0	0	0	0	0	0	0	0	0
AGATGGGTTTCTGATC	alt_903_negative	1987	140	2457	2152	176	1999	182	1812	170	1723
CGCTAGCTGCCGCCAA	alt_903_negative	1165	159	2023	1924	153	1449	157	1602	154	1371
TTGCGCTCGTTACGCT	alt_903_negative	419	36	433	412	35	345	37	333	30	321
AGTTAGGTTTAGTACC	alt_903_negative	1527	113	1904	1609	119	1485	135	1482	129	1392
TGTGGCAATAACTTGG	alt_903_negative	230	9	278	223	7	227	19	222	31	196
AAATTTAACGGTAGCA	alt_903_negative	2210	150	2776	2455	185	2213	193	2168	166	2026
TCAATTTTGTTTACTA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GTGGACATATAAGGGA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
CTTTATCGTGATGATG	alt_903_negative	506	26	559	467	27	415	30	450	38	397
CTCCGCTGCAGTTCCG	alt_903_negative	746	73	874	787	63	670	61	664	59	638
TAGTAAAACCACAGTG	alt_903_negative	135	9	160	146	17	150	14	170	21	158
GTTGCCTTTCTACTAT	alt_903_negative	264	21	316	281	28	261	26	287	32	238
CTACAATATTTTCATA	alt_903_negative	0	0	0	0	0	0	0	0	0	0
GGCCGGTTTACCTCCG	alt_903_negative	2323	197	3016	2688	193	2373	207	2384	203	2185
TGGAATCCTCTCATAC	alt_903_negative	554	54	601	473	49	482	29	418	43	423
CCCTTTCTTACAACGC	ref_306_RC	7	17	10	11	22	8	16	6	18	13
CAGTCCTGGGTGGGAT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
CCATTCAGCTGGAAAG	ref_306_RC	3	4	8	9	12	1	9	2	7	6
GCCTCTGCTTCACCAT	ref_306_RC	90	108	121	77	96	72	116	76	111	75
TTTTCATTAATCCCTC	ref_306_RC	5	5	15	4	14	6	8	9	12	7
AAGTTTATTTTCTTCC	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TTCGGCGCCGATAAGT	ref_306_RC	7	4	5	4	11	3	8	7	9	10
GGTAAGTTTTTCGAAG	ref_306_RC	126	141	133	136	154	132	145	93	172	117
TCGGACCGTGTAATAC	ref_306_RC	5	2	5	9	4	1	7	2	7	2
TTCATTCTCCTACACA	ref_306_RC	119	175	137	135	146	124	165	92	188	94
TAAATGTTTGGTTTCG	ref_306_RC	46	65	69	35	65	48	83	50	58	50
GGACCAGCCGCGGCAA	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GCGACTTCCTACGCTA	ref_306_RC	32	39	37	43	41	24	62	23	41	30
TTCGTCTACAGAATAG	ref_306_RC	9	9	10	10	17	14	12	13	15	19
CTCCATCATCCTTGTT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GATGGACAGTGTGCCT	ref_306_RC	11	23	23	21	26	13	25	15	27	27
TGCGCCCCAAAATTGG	ref_306_RC	9	13	11	11	18	16	11	9	18	18
GGCCTCAATTTGACGC	ref_306_RC	41	46	65	44	46	29	51	37	45	34
CATGTATGCAGTATTG	ref_306_RC	0	0	0	0	0	0	0	0	0	0
CCTCCAGAGAGTGTCG	ref_306_RC	3	2	5	2	3	0	0	0	3	2
GAGTACGTGTCAAGGG	ref_306_RC	28	30	40	29	28	37	42	25	38	31
CGCTCATGCCCACCAA	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTTGTAGGAGGG	ref_306_RC	0	0	0	0	0	0	0	0	0	0
CATTCCCGTCACGAAT	ref_306_RC	21	16	15	16	8	13	23	14	22	9
TTCACTTGTTTGGTAT	ref_306_RC	66	106	103	68	86	90	101	72	120	77
TGAAGGCTGGATGGAC	ref_306_RC	0	0	0	0	0	0	0	0	0	0
CGGCTTAACTGCCTTT	ref_306_RC	50	53	46	43	48	44	42	33	59	37
CTATTCCGCCACCCTT	ref_306_RC	1	1	0	1	2	0	3	0	2	1
AATTCTCCATTCGTGA	ref_306_RC	5	7	5	7	6	3	2	4	2	3
CTCCGTGTCTCTATCA	ref_306_RC	34	43	21	15	42	26	50	23	25	28
ATCCATCGTGTGTAGG	ref_306_RC	33	34	58	37	43	29	52	41	53	47
GCCATATGTTGCGACC	ref_306_RC	40	60	55	49	73	61	90	53	74	38
TTTTCTCCTGAATCTA	ref_306_RC	10	10	15	9	10	11	12	9	15	10
ACGTTATTGAGATTTC	ref_306_RC	36	44	43	50	39	45	60	33	37	33
TGACCCCGTAGTGAGG	ref_306_RC	0	6	7	8	5	2	5	7	2	3
CAGTTTAAAAGATACC	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TGGCTCCTCGCCACTG	ref_306_RC	1	4	4	7	6	5	3	3	1	2
GGACTCGAGGTCTCTC	ref_306_RC	37	49	47	48	47	35	47	30	51	33
CGTGAAGTGATGGTTT	ref_306_RC	18	34	27	17	22	14	26	23	39	14
GCAGGATAGTCACTAA	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TCACAGTCGGTGTTAA	ref_306_RC	13	16	15	9	19	22	24	7	16	12
GCATATCCTGCTAACT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
ATTATTCTGTGCCGGT	ref_306_RC	10	9	8	6	6	5	10	3	11	5
ACCCTTTTCATTGTAA	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GCTTTTTAACCCGCGT	ref_306_RC	84	97	106	104	115	121	127	90	134	100
CAACATTTATCAATAC	ref_306_RC	0	0	0	0	0	0	0	0	0	0
ATAGCTAACTTTTACG	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TCGTGTGTTTGTCATA	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GTCGATACATATCAAG	ref_306_RC	25	26	33	29	33	17	30	21	36	16
CTTATCCCATACCAGA	ref_306_RC	29	32	34	27	30	29	26	18	32	25
TTGTGCACGTCATATA	ref_306_RC	44	67	49	38	65	43	59	41	63	40
GGCCCTTTAGTTCAGG	ref_306_RC	36	33	59	40	28	35	52	32	51	34
AGGAGTGCTTCGAAGT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
CACCAGGGACATCAAG	ref_306_RC	0	0	0	0	0	0	0	0	0	0
CAGGGTGGCGGCTATA	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GTTTCTCAGTGGTAGA	ref_306_RC	21	18	17	24	27	15	25	16	27	18
GTACCCATGCAGATTT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
CCACGTTTAGTAACAG	ref_306_RC	6	12	4	2	14	2	16	5	8	7
CTTAAGTGTCGTAGTC	ref_306_RC	18	31	42	33	34	17	25	21	33	30
AATCTCTGGCTGTATG	ref_306_RC	17	11	15	9	20	9	23	18	21	10
TGATGGTATGAAATTG	ref_306_RC	4	2	0	3	5	1	5	2	3	3
CAATACGACAAAGCCC	ref_306_RC	0	0	0	0	0	0	0	0	0	0
ACCCAGCGATAGAGTT	ref_306_RC	10	13	16	10	8	8	9	7	12	7
ATCATTGTCATTTAGG	ref_306_RC	13	26	24	18	35	18	33	25	19	20
CTCAGTAATGATTACT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
ACTTTCGTTGTACAGT	ref_306_RC	32	25	26	28	34	31	38	28	50	24
ATCCCTTACCGCCTAA	ref_306_RC	18	11	9	9	18	14	23	11	14	6
TTGTCGGCTGTATGCT	ref_306_RC	16	20	24	24	25	14	27	17	33	12
ATTCGTGGCTCATTTT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TGGGCTCTCACCACTA	ref_306_RC	32	55	52	42	55	45	49	33	54	25
TGACTTTCACCGAACG	ref_306_RC	2	3	7	6	2	2	5	3	7	9
TATCGTAAGAATTTAG	ref_306_RC	7	11	12	12	9	11	8	5	9	4
TATTGTCCACCTAATG	ref_306_RC	12	24	16	14	28	9	14	11	22	27
CGTTCCTATATTCATG	ref_306_RC	18	24	32	25	41	30	32	28	52	17
AGCTCTCCGTATACGC	ref_306_RC	7	7	7	8	11	3	9	4	5	4
ATTGTTCTCAATCTGC	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GACGTCAGGTTTCGCG	ref_306_RC	41	49	47	49	62	47	54	44	55	38
TGCGAACCAGTGCGTG	ref_306_RC	8	20	9	6	12	7	15	9	14	9
TTATAGCAGTGCTGTT	ref_306_RC	7	15	16	12	17	11	13	8	19	13
ATGATGCCCTATTTTA	ref_306_RC	15	19	17	19	15	20	13	16	21	18
ACCGTGTTCAGGTAGT	ref_306_RC	31	56	28	34	63	26	47	35	47	34
AGAACAAATTAGAGCG	ref_306_RC	31	38	29	20	40	29	48	38	44	22
ATCTATCTTGCACTGA	ref_306_RC	31	32	33	35	65	29	56	27	44	21
GGTACTGATTGAGCGT	ref_306_RC	15	8	15	11	18	9	19	21	19	8
CGAGGGTGGGCCGTTC	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TAATTTCCAATAGCAT	ref_306_RC	210	227	247	202	262	187	253	194	279	206
CGTTGATCCCGCCGCC	ref_306_RC	22	19	24	9	12	15	14	12	17	20
TCAAAGTGTGCACTAA	ref_306_RC	0	0	0	0	0	0	0	0	0	0
TGCGCAAGAAGGCCTT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GCAGGCGGTAGATATC	ref_306_RC	14	16	10	14	12	13	16	11	8	9
TTCTGCTTCCTTACCT	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GGGGCTCACATCCTGG	ref_306_RC	0	0	0	0	0	0	0	0	0	0
GTCAGAACTTGAATCG	ref_306_RC	0	0	1	1	0	2	6	0	1	1
GTTGACGGTTTTTTAG	ref_306_RC	36	29	25	16	45	29	45	29	42	27
TTTCGGAGCCACGGTC	ref_306_RC	20	26	29	20	21	18	27	15	22	14
ATCATCAGGACATTGG	alt_5769_new	1	3	2	3	1	5	3	0	0	2
ATATTGGGCCATTTAC	alt_5769_new	0	1	0	2	0	0	0	0	0	1
GTTCGCTCTCATGGCT	alt_5769_new	76	82	103	80	84	74	67	55	61	74
TTAATCCTGCATCCCG	alt_5769_new	42	32	30	32	21	33	31	30	20	26
TATGGGTTAGACTAAG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CTTACGTTAGGGTATG	alt_5769_new	29	39	48	50	50	39	42	29	35	23
TGTCGGATAACCCATA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TAAGTTGTGCCCTGAT	alt_5769_new	11	3	15	11	7	13	11	8	12	8
TCCTCCACTACGAGTA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
ACCTCCGTCTTCAGCT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TTGGAACGAACGATTA	alt_5769_new	18	12	17	17	13	12	19	11	11	23
CAACGGCCTTTTTTAT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TCTCTCCCGTTTCGCT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TGATTGCACACATTTA	alt_5769_new	30	41	38	32	37	36	37	39	55	23
ACTTAATATCCGGTGG	alt_5769_new	6	4	13	5	11	19	10	10	12	7
TGCTCCAGGCGATAAG	alt_5769_new	12	17	16	12	16	16	13	8	26	17
ACGTCGCGGTCTAAGG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCGGATTACGGCCAAG	alt_5769_new	150	140	149	152	118	137	119	122	169	138
TTCGTTAGGGCTCTGT	alt_5769_new	8	2	5	8	2	4	2	5	3	6
GCCGGCCTCACGTCCT	alt_5769_new	8	7	3	5	17	6	23	6	17	5
CCTTTATGGCGTCATA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
ATGTCCCTAGCAAAGA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TCTTCAAGACTTACCT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TACAACGGTGTGTGCC	alt_5769_new	1	3	3	7	2	1	3	3	7	2
ACATGCCAGAATGTTT	alt_5769_new	85	107	102	89	112	83	110	95	131	73
CGTATATCCCTTGGTA	alt_5769_new	24	30	32	25	14	22	18	26	26	16
GTCTTACGGAAATCAC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TTCGTTGGTTGCCTGG	alt_5769_new	5	4	7	6	3	4	3	1	0	6
ACCCTTGCATACTCAG	alt_5769_new	30	18	23	25	18	23	23	25	29	12
ACCGCATATTTTCATA	alt_5769_new	0	0	0	1	0	0	1	0	2	0
ATCTCTCGGCCGGGTT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GTAGGGCTCCAGGGAC	alt_5769_new	26	39	53	48	40	39	26	30	28	24
GGTTGAACGGGTGTGC	alt_5769_new	2	1	8	3	2	1	2	6	5	1
TAATGCACACGGTGCG	alt_5769_new	18	30	37	28	34	19	23	25	32	13
ATGTGGATCCGGTTAT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TTCTTCTGAGGACGGG	alt_5769_new	4	8	8	10	5	7	4	11	7	3
CGTCACCCGTGTACAG	alt_5769_new	42	43	46	45	54	32	67	31	64	32
TGCAATGCCAGGGCAA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCCGGGGGATGTTGCA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
ACGCGCATGCTGTGCA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
AGCGCGTATTATCACG	alt_5769_new	30	33	42	30	37	33	27	36	33	27
TTTATTACAGTGTTTC	alt_5769_new	64	61	80	68	62	49	54	59	71	49
GTCGCTGTAACGGTGA	alt_5769_new	9	28	21	26	22	16	18	9	15	14
TTGCAACAACGATTAG	alt_5769_new	2	0	3	2	4	2	0	0	2	0
AGCATCATTAAGCGGG	alt_5769_new	3	3	5	3	0	3	3	2	1	3
GTTCCGCATCGTAGAA	alt_5769_new	44	30	38	36	29	32	37	35	47	30
TTTCTGGTTCGTGCCG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCCTCCCCCGGTCTGG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
AGGTTTCTATTTCGGG	alt_5769_new	150	105	174	142	113	128	139	152	140	130
GGCTCAATATTCCGAA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CATAGTCGTAGGTATT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
AGCCTCCTTAATTTAC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TCAGTTTCTGCGAATA	alt_5769_new	31	37	48	30	39	34	48	32	44	31
GACCAGGTTTCCATGG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCCCAAGTTCTTGGGG	alt_5769_new	9	12	7	6	12	4	13	9	17	2
TGTTTGGTTTTCTTTA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GGTTCATCTAGAACAG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GCGGTAGGCATGGCGC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GCTAGCTCGAAATTGC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GCCCCCATGCATTATG	alt_5769_new	36	32	37	31	34	30	31	31	28	26
GCTATGTCTCCAGGCC	alt_5769_new	67	58	61	63	66	56	41	61	57	52
GTGTCGGTTTCTCATG	alt_5769_new	31	23	39	26	21	30	37	39	26	37
GTTGGGCAACTCCTAA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCGGTAAGCGTTTTCG	alt_5769_new	64	56	60	66	56	62	69	51	49	65
CCCCTCTACTCATGGG	alt_5769_new	46	44	48	39	48	42	55	30	45	29
GAACTTTTTGCTATCG	alt_5769_new	16	12	26	35	10	23	9	16	15	14
AATAGATATCGATGAC	alt_5769_new	7	29	15	16	27	17	18	6	10	15
TCATTAATTAACGACA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GTACATGCAGCATCAA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TTCCATGGCCTTGGTC	alt_5769_new	38	35	37	52	30	29	35	33	30	27
CGGCATGTCGATAGGT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TCAGCCTGGCGTCAGG	alt_5769_new	30	51	47	35	45	33	53	38	40	34
TCTCTCGACGTTGACA	alt_5769_new	21	11	13	20	14	18	31	15	20	25
ATTTCCTCTTGTGCTA	alt_5769_new	44	41	57	38	48	41	37	35	29	37
CGCCCCCTGTCTTCGG	alt_5769_new	1	7	14	9	4	9	14	4	8	5
TATTTTTCTAGAACAG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCGATGGTTGGAGGTC	alt_5769_new	42	31	52	43	41	33	24	37	26	43
TGGGAAGCTCAGACAC	alt_5769_new	49	63	46	64	33	42	46	44	51	36
TCCTTTAATCGACCTA	alt_5769_new	5	5	8	5	4	8	7	5	3	10
ACCTCTAAACCGACGC	alt_5769_new	16	10	17	13	10	13	30	18	13	22
CAACGCCTTCTGTTTT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TTGGCAACGATCGCTC	alt_5769_new	36	27	35	30	29	24	20	29	32	21
TAAATCTCGGCGTTTG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TGCTTTCAACTTGCTA	alt_5769_new	24	29	29	22	31	26	26	28	17	24
CCTTCTGTTTGGCCCC	alt_5769_new	19	38	29	29	29	25	25	12	37	12
AATTGAAGATGAGTGC	alt_5769_new	102	86	117	103	92	82	88	83	121	92
TTTGCCAGGAACATTC	alt_5769_new	19	20	28	24	17	9	15	20	23	21
GATATATTTCATCAGA	alt_5769_new	37	28	43	33	27	45	31	41	29	22
TGAAGCTCACTCCCGG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
ACTGCTGCACTAGGTT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TGGATGTGAGCCGTTC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCAGCGGCCTCAACTA	alt_5769_new	5	3	3	4	4	4	5	5	5	4
GCTTACAGGATTTAGG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TTTTTAGCGATCGTGG	alt_5769_new	47	36	38	39	36	34	28	49	44	26
TTGTTGTATTTCGTAC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CTATGAACAAAGCTGC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CTAAGTCTTACTGTAA	alt_5769_new	4	5	5	5	5	2	4	2	1	3
GCTCACCGTCTAGTCC	alt_5769_new	25	27	38	28	37	19	43	20	34	19
AAAGTCATTTAGGACC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GGTGACTCGAGCACAG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TCTCAGGGTTGACCCC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GACTTAGTTCCCGCTG	alt_5769_new	32	22	24	27	25	17	24	30	22	16
TAGATCTATTTATTGT	alt_5769_new	60	64	61	87	70	53	55	71	68	55
TTACATGTTAAGTTCA	alt_5769_new	25	31	33	29	38	29	30	31	41	26
GAGGCTGGACACGCTC	alt_5769_new	25	22	34	29	34	32	34	28	37	23
GATTCATGGGTCGGTA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
TATCAACGCTGTGGAT	alt_5769_new	129	154	161	159	153	124	178	147	166	116
GGTCTGGGGTACTCTT	alt_5769_new	0	0	0	0	0	0	0	0	0	0
ATATTCCCGTCCTACA	alt_5769_new	26	23	27	27	37	24	29	19	31	29
CGCCTAGTCCTGGTGG	alt_5769_new	33	30	37	35	34	25	39	28	28	25
GCTTCGAACTCTAACT	alt_5769_new	111	118	146	125	100	129	115	119	133	113
ATGTTGCACTTAGTTA	alt_5769_new	33	40	50	26	30	30	42	43	45	25
CTGAATTTGTCAGGTC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
AATGGCTCTTCGGTAT	alt_5769_new	8	1	9	9	11	10	2	4	7	10
ATCAATAATCTCCCCG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCGAACGTATATCCTC	alt_5769_new	7	5	2	4	6	5	7	4	6	5
GAGGTCGCCTTAGGTT	alt_5769_new	18	17	30	27	24	26	18	26	14	11
TAACTGATTGTGTTTT	alt_5769_new	4	9	6	6	4	4	11	8	8	7
TCTTGGAAGCTGGGCC	alt_5769_new	29	22	26	18	24	13	33	11	25	25
TCGTCCTAAACTCACA	alt_5769_new	147	84	156	140	113	83	116	120	129	104
CATCTTCCACAGTAAC	alt_5769_new	39	44	42	38	41	56	33	39	46	51
TTGCGGCCACGTTCGG	alt_5769_new	0	0	0	0	0	0	0	0	0	0
GCGCTATTCCGCCCTA	alt_5769_new	11	7	20	9	16	16	12	11	11	10
GCGGACACGCCATCGA	alt_5769_new	33	46	73	50	61	48	44	42	43	51
TTTTCTCTGCACAGGA	alt_5769_new	2	1	3	2	1	1	1	0	1	6
GCCCCATTGGCACCCC	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CTTAACACCATCCGTC	alt_5769_new	22	73	30	31	81	34	111	32	94	24
CCTCATGGAGATTCTC	alt_5769_new	30	30	30	33	30	42	21	26	44	23
CGACGCACTCATCCTG	alt_5769_new	84	68	103	83	87	67	70	82	62	54
TGAAAGCGGAAGGTCA	alt_5769_new	11	13	5	12	18	14	13	11	13	16
ACTGGACTTTATACGT	alt_5769_new	23	22	38	27	18	32	25	19	23	19
TTGTGGTCAAATCGGA	alt_5769_new	0	0	0	0	0	0	0	0	0	0
CCGTTGATTGCCGGCG	alt_5769_new	11	7	11	15	9	13	8	12	9	10
CAACGATCATTATGTT	alt_3951_reverse	10	13	19	11	7	10	13	11	9	16
TTTAAGTTATTTTGGT	alt_3951_reverse	6	8	6	7	8	6	9	11	12	9
TAGCACGGCTTTGCTG	alt_3951_reverse	8	10	14	9	17	12	10	10	11	9
TCTTCCTGTATCGTTG	alt_3951_reverse	8	19	16	21	13	16	26	14	12	19
AATTGATATTTTTAAC	alt_3951_reverse	19	19	32	20	23	21	19	15	25	17
CGTCACTGGTACCCTC	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCTGACTGAACTT	alt_3951_reverse	36	35	30	34	30	38	43	34	30	29
CATAGAGTATCGGAGT	alt_3951_reverse	7	13	18	10	11	15	19	6	15	14
GTGGGGTCGGTGCATC	alt_3951_reverse	122	150	183	140	188	138	202	103	158	138
GGCGCTAGACAGTTTC	alt_3951_reverse	9	4	9	4	5	8	7	4	2	11
ATCCCTCTACACTTTC	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAGGCCTTCATAG	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGAATGACGCGCG	alt_3951_reverse	27	20	23	22	16	34	20	30	24	18
GCGAATTCCTTTCTTG	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
CCCTAGACGCAATTAC	alt_3951_reverse	324	372	405	284	382	337	409	279	422	236
CTCCCCCGGCTCCGGC	alt_3951_reverse	29	30	17	16	39	24	46	25	37	21
TGTACTATATCCGGAT	alt_3951_reverse	79	111	129	94	111	97	108	98	136	91
GGCTGAGTGAGCACTT	alt_3951_reverse	4	6	4	16	7	9	7	7	7	9
TACCATAATCCTTCTT	alt_3951_reverse	54	71	66	72	56	61	76	59	59	54
ATGCGTGTCTCAGCCG	alt_3951_reverse	6	4	4	2	10	5	5	4	8	7
CGTTTTCATCTCTTCA	ref_3951_reverse	38	30	45	53	28	51	33	39	33	37
ACTCTGCGCAGTTTAG	alt_3951_reverse	43	31	39	38	30	30	37	32	50	31
TATCGAACCTTTAATA	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCGCGCAGCCGGA	alt_3951_reverse	9	9	15	19	11	15	15	11	10	18
TACGCCGAGCTACGTT	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
TGTATTCAGTTCGTTT	alt_3951_reverse	0	1	0	0	0	0	0	0	0	0
TGTGTTTTGTAAGTTC	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
TAAATGTGGTTAGATC	alt_3951_reverse	28	28	31	32	32	24	35	28	47	22
ACGTCTATTCATGCCT	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
GACATATGGAACCCAT	alt_3951_reverse	81	104	129	103	82	85	90	80	115	99
GCGCAATTGGACATCG	alt_3951_reverse	15	11	11	11	15	9	23	13	18	11
TATTGTCGGGCCTCTA	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCCGAGTAGGTAG	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
GTTATGACTAGACCGT	alt_3951_reverse	7	13	20	6	17	6	13	9	10	11
GCAACATTTTACTTTT	alt_3951_reverse	11	13	7	8	14	10	15	7	12	11
TTGCGCATATCCGGCA	alt_3951_reverse	86	91	121	96	102	77	124	98	102	80
TATGCAGCTAAGTAGT	alt_3951_reverse	60	69	72	64	68	55	48	63	63	53
TCGATTGACGATGAGT	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCAGTGCACGCTG	alt_3951_reverse	5	14	14	17	7	7	17	6	9	4
GACTGCCGACGTTTGC	alt_3951_reverse	37	39	36	47	36	34	31	43	30	34
TCATCCACGGCACGAC	alt_3951_reverse	49	40	58	47	47	56	41	24	49	39
CCGGGTTCAAATAACT	ref_3951_reverse	174	136	180	145	130	158	148	131	146	126
CACTGTCTTCTGCCGG	alt_3951_reverse	16	11	22	21	14	11	18	19	10	7
ATTGGTTCTCCGACGC	alt_3951_reverse	2	1	5	1	0	3	2	2	2	3
GTGTCCACGTTTTGTA	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
TACTTTAGTGGCGAGC	alt_3951_reverse	11	13	9	6	6	8	15	11	14	12
TGAGATCCCTGGCCGG	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
TAATAGTCATTGAAAC	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTTTGAAAACGGT	alt_3951_reverse	50	37	57	67	49	30	56	58	57	52
GCCAGACGTTATAAGC	alt_3951_reverse	14	25	21	33	19	25	18	23	34	17
CCCTAGCCGCAATTAC	alt_3951_reverse	0	0	0	0	0	0	0	0	0	0
GAATAAATCCTAAGGA	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GAGTATGGTTACAAGC	ref_5988_new	22	33	28	15	38	15	33	16	39	11
TATGGCCTCGATCCCG	ref_5988_new	3	0	1	2	1	1	2	2	2	2
CTTTTAAGTTCCACCT	ref_5988_new	29	43	33	32	44	20	45	25	58	27
GTAGTAGGCCCACGCG	alt_5988_new	29	24	28	20	33	19	32	22	27	21
AGCGAACTAGGCGATA	ref_5988_new	35	46	29	27	43	24	34	26	50	25
ATTCCACGCGAGTCGA	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GATGTTTCCCCGATAT	ref_5988_new	27	60	24	29	53	27	51	19	59	28
TCTTGAGTCTGGTAGG	ref_5988_new	17	35	32	16	40	19	22	20	29	18
GAATCGTTCATTAGGT	ref_5988_new	1	6	1	5	2	2	6	2	8	5
GAATATATAATGGTCC	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GCATATTGTCTCAGTT	ref_5988_new	0	0	0	0	0	0	0	0	0	0
TATTCTTCTCGCAGCT	ref_5988_new	12	20	11	12	24	12	11	14	21	7
TACGATTCTGCTACTT	ref_5988_new	98	170	131	127	172	94	199	85	222	90
CTTATTGTTCTTAATT	alt_5988_new	0	0	0	0	0	0	0	0	0	0
GGACGTGTATTGATCC	ref_5988_new	19	28	10	19	25	11	33	13	26	16
CGGCCGTTCACCGGCG	ref_5988_new	115	195	154	118	176	124	185	132	178	146
CAGCGACCTTTGTGAG	ref_5988_new	84	159	90	91	197	101	144	96	148	80
TGGCCTGTAATGGAGT	ref_5988_new	0	0	0	0	0	0	0	0	0	0
AAGTCCTATTCCTCTA	ref_5988_new	28	25	25	10	28	14	28	15	29	14
CTGTGGCCACGTTGTC	ref_5988_new	20	82	20	35	72	19	78	16	92	22
TACGGACGCTCCTCAC	ref_5988_new	27	40	26	41	49	23	48	39	40	26
TATCGGGTGCCGACGC	ref_5988_new	13	20	10	14	12	7	11	10	15	7
CCTCTCGATGGGTGGT	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GCTACCATATCGTGTG	ref_5988_new	0	0	0	0	0	0	0	0	0	0
CATGGGCGAATAGTAT	ref_5988_new	26	42	32	22	35	27	46	23	44	22
TCAGTCACTGTAGATT	ref_5988_new	0	9	6	2	11	2	9	2	6	1
CTCCGTAAGCGCCCGT	ref_5988_new	74	112	87	68	94	59	119	48	122	53
TGATCACGACAAACCC	ref_5988_new	1	0	1	1	2	1	1	0	0	1
GCGATTACTGGGTACA	ref_5988_new	24	26	16	11	40	19	31	27	36	17
GCATCTTTCTACTATG	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GGTCCTCGTGCTGGAT	ref_5988_new	6	13	18	7	12	12	6	10	10	7
ATATTTCTTTTTTTGT	ref_5988_new	77	122	143	106	126	106	136	101	146	97
TATCGTCAACATATTC	ref_5988_new	4	8	4	4	6	12	8	4	12	8
AACAGTTTTTGTTAAC	ref_5988_new	12	22	17	5	25	15	16	9	27	14
GGTTGCATGCGTACGA	ref_5988_new	55	116	87	75	126	63	121	73	132	66
ATTTGAACGGTTCTAT	ref_5988_new	58	76	73	67	105	59	98	55	114	48
CAATGATCCGGACGAA	ref_5988_new	28	32	30	37	46	32	35	24	49	26
TGTTAATCGTCGAACA	ref_5988_new	4	7	11	4	6	5	12	0	14	6
TCCGCCGAATCAGGAA	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GAGTGCTCGACATATA	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GTCTGGCCATTGCAGT	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GAAGCGGCGTTGTTCC	ref_5988_new	8	17	7	11	20	10	16	5	18	7
CCGAAAAACTTGCAAC	ref_5988_new	16	27	13	17	29	13	48	8	29	10
TTAGGGCCGGTGGGAG	ref_5988_new	7	10	4	10	10	11	14	10	9	8
TTTGAGGCCTTAGATG	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GATGTTCTCCTCGACC	ref_5988_new	43	78	42	41	83	46	73	37	73	43
TATAAAACTAACGAGT	ref_5988_new	40	74	66	42	80	48	78	49	95	44
TTATTCGGAGTCTGAT	ref_5988_new	0	0	0	0	0	0	0	0	0	0
CGTGCCTCTGGTTTAA	ref_5988_new	71	94	77	59	111	55	94	57	127	60
CATTACTCCTAGTCCG	ref_5988_new	0	10	5	11	23	7	17	6	11	5
TCTCGTGGACAGCGCA	ref_5988_new	19	22	13	15	28	21	30	14	20	24
TTCTGTTATTGTGCCA	ref_5988_new	0	0	0	0	0	0	0	0	0	0
TGTTTCCCCCTCTTCT	ref_5988_new	22	22	23	17	24	28	28	18	34	15
AGCACACGGGAGCTAG	ref_5988_new	40	62	46	37	70	35	75	52	70	42
TCGATGCTCACTCTGG	ref_5988_new	0	0	0	0	0	0	0	0	0	0
GTAGTCTTAGAGAGGG	ref_5988_new	52	123	72	77	92	68	97	58	92	54
CCCCTGGTTACGTTAT	alt_5988_new	68	86	67	71	100	52	104	63	110	51
TGACTAACAAAGTTCG	ref_5988_new	67	94	62	80	115	51	106	46	84	53
GTCCCTGGTGTTGCCT	ref_5988_new	112	174	125	131	208	111	203	94	230	111
TGGTTGTATGTTTTAT	ref_5988_new	42	73	35	29	54	38	85	39	70	25
TTAGTGAACCGGACTC	alt_5988_new	0	0	0	0	0	0	0	0	0	0
TAGCCGACCATGGTTC	ref_5988_new	0	0	0	0	0	0	0	0	0	0
AGCTGGGTGGACTTTG	ref_5988_new	20	37	24	11	23	12	31	14	38	12
CCTTGTGTGGGGGGTC	ref_5988_new	10	10	7	6	8	9	8	5	12	6
GCTGGTATTATCCAAG	ref_5988_new	16	38	23	22	49	21	46	22	22	16
AATTGCTATCATCTCG	ref_5988_new	103	101	104	75	102	94	114	57	157	81
CTAACCACGGTTCGCA	ref_5988_new	0	0	0	0	0	0	0	0	0	0
CCCCTGTAGCTACCCT	ref_5988_new	6	13	14	11	19	4	14	8	14	13
TCTCCGGGTGGCACGC	ref_5988_new	42	59	31	46	72	45	58	25	65	40
TCGTTTGTGTGTCAGA	ref_5988_new	76	119	119	68	122	63	136	74	158	62
CTCTTTGCCTTTCTGG	ref_5988_new	0	1	2	0	0	1	0	0	0	0
CAGTCCGGGGGCAGGG	ref_5767_new	154	199	163	140	193	152	191	140	190	127
GTTGAGTATTGCGGAA	ref_5767_new	5	6	9	10	5	9	5	6	11	1
ATTTCTCTGAAGGGTT	ref_5767_new	46	37	53	26	58	41	66	37	58	31
GTATTAAGTCTAGATA	ref_5767_new	0	0	0	0	0	0	0	0	0	0
TCCTTCTTATTACCTT	ref_5767_new	101	133	139	118	146	99	153	95	170	85
GATCATTGGCACTAAC	ref_5767_new	9	10	8	14	15	5	16	7	14	8
TCGGATGCTCCCGCTC	ref_5767_new	30	45	38	28	46	33	52	44	51	34
AAGACACCTATCGGGC	alt_5767_new	18	22	13	8	15	9	22	7	28	10
CATCTTGGTAGTGATT	ref_5767_new	38	28	29	28	30	16	35	15	39	30
GCGTTTGCCACGACAT	alt_5767_new	0	0	0	0	0	0	0	0	0	0
AGGCATAGTAGTACTT	ref_5767_new	53	58	44	45	61	44	76	36	56	31
ACTGCCCGGGCACTTT	ref_5767_new	85	147	111	99	124	88	152	70	156	82
TCCTGCCTAGTCTTTT	ref_5767_new	0	0	0	0	0	0	0	0	0	0
AGGCTAAACGTGGGGT	ref_5767_new	147	248	209	184	278	174	278	145	302	136
TACATCATATTCCTTG	ref_5767_new	61	87	61	56	73	44	76	49	82	47
GCCTTATTTATAAGTA	ref_5767_new	4	8	14	6	11	9	15	4	14	9
ACTACTTGTCCGTGTC	ref_5767_new	47	79	58	56	70	66	77	37	82	57
CTCTACACGTGCAGGG	ref_5767_new	54	93	68	73	112	56	95	59	98	58
GTGAATCCTTCGTCCA	ref_5767_new	0	0	0	0	0	0	0	0	0	0
AATACCTGGGTAAATC	ref_5767_new	6	23	11	10	18	10	12	8	10	7
CCGCGTTCGCCTACGG	ref_5767_new	0	0	0	0	0	0	0	0	0	0
AACTATGTTATGTCGT	ref_5767_new	17	34	36	25	30	28	34	18	31	19
CGAACCCCAAGTGATA	ref_5767_new	37	42	50	51	50	33	71	34	37	40
CAGTTTGGGGGTTTTC	ref_5767_new	12	26	18	15	22	22	26	15	26	17
TGCATTTATCGCTTTA	ref_5767_new	20	20	17	12	18	15	16	16	29	12
AATTAAAATTCCTCCC	ref_5767_new	16	22	24	16	20	17	20	15	38	11
CAACTTATTTGTTTTC	ref_5767_new	17	19	39	26	24	35	26	25	26	19
AACTACATGCATTGTC	ref_5767_new	39	48	40	53	61	45	79	30	64	35
ATCTGGGGTTCGTTTG	ref_5767_new	28	41	31	42	51	30	47	26	45	33
CTATTGCCTATAGACT	ref_5767_new	10	8	7	6	24	6	8	5	16	4
GTGTGTTCAGCTTAGC	ref_5767_new	14	24	44	17	43	25	30	14	25	20
ACTGCATGACGATAAT	ref_5767_new	55	69	102	60	85	62	104	76	97	66
GATCTTTCGTACTCTT	ref_5767_new	60	75	66	63	92	58	110	45	113	64
CCTTCTGTAAATTCGG	ref_5767_new	25	29	21	16	21	18	35	21	34	14
GAAGGTGTGTACTACT	ref_5767_new	128	254	178	129	285	137	287	127	277	122
ATCTTAATGATGGACA	ref_5767_new	0	0	0	0	0	0	0	0	0	0
GGCATTAGACTAAGTG	ref_5767_new	31	50	31	28	48	35	57	19	47	20
CTTGTATGTCACAGCC	ref_5767_new	12	26	10	12	20	13	21	12	19	12
TCAGGTAATCGGCCAT	ref_5767_new	13	12	9	17	27	5	19	9	12	11
GGAGCTGGCCAGGTTG	ref_5767_new	10	23	19	6	16	12	22	9	20	19
GTGGTTGTCTGACGGC	ref_5767_new	3	15	6	3	11	7	7	5	10	3
TTTGTTCTATCGTTGG	ref_5767_new	10	15	19	11	18	13	20	12	18	12
AGGCTCTTTCCGTACC	ref_5767_new	0	0	0	0	0	0	0	0	0	0
TACGTATCAGGGTCTT	ref_5767_new	50	70	61	53	72	48	80	40	63	48
ATCCACCTTCATACCT	ref_5767_new	1	2	2	1	3	2	4	3	4	2
AGCGCATACCGTAGAT	ref_5767_new	36	52	68	31	61	40	71	37	61	41
GGGAGCTCTGCCGTAT	ref_5767_new	16	20	13	19	17	25	25	15	21	13
TTTATCGCCATGACTC	ref_5767_new	39	48	42	29	31	40	41	47	37	26
GCCCTCGCGTCAGATA	ref_5767_new	19	42	36	27	36	29	53	19	54	12
GCTTGGGTGATTATTC	ref_5767_new	20	35	23	20	19	14	33	17	34	8
GAACTCTGTGTATATT	ref_5767_new	0	0	0	0	0	0	0	0	0	0
GACCAAGTAAATGATC	ref_5767_new	2	5	4	4	9	2	6	4	13	2
AAGCAATTACGGTTAC	ref_5767_new	0	0	0	0	0	0	0	0	0	0
ATATATGCTTCCATCA	ref_5767_new	0	0	0	0	0	0	0	0	0	0
ACCCCTTGTTTGTGGG	alt_5767_new	11	13	10	8	15	7	11	11	13	7
CTGTTTACAGCCCGTG	ref_5767_new	5	25	6	11	15	14	28	8	20	9
CCAGTACGTACGCACC	ref_5767_new	45	99	58	39	73	41	89	34	92	40
GTTTTGTTTCACCCCT	ref_5767_new	19	15	20	28	44	23	29	19	25	23
TGCTACTGATCATTTG	ref_5767_new	24	47	40	29	55	29	53	31	44	36
TAATCGGTGCCGAGGG	ref_5767_new	78	110	96	81	82	74	133	54	146	85
CTAAACTATTGACACT	ref_5767_new	3	4	6	6	6	4	4	0	3	4
ATTATCTAATCAGGGC	ref_5767_new	0	0	0	0	0	0	0	0	0	0
ATTCGGGCATAGCGAT	ref_5767_new	0	0	0	0	0	0	0	0	0	0
CCAGGCGCCTTTGTGG	ref_5767_new	0	0	0	0	0	0	0	0	0	0
TATGATCGATCGCTCA	ref_5767_new	66	121	86	61	117	72	104	71	106	73
CACTCTTGTGGGACAG	alt_5240_fdr	69	59	89	77	66	56	69	70	65	79
GCATTAACATCAATTC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCCAGAAAACAAA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTCTGACGCGGAG	ref_5240_fdr	0	1	2	4	1	0	4	0	0	1
AGCTAAGCGCGAATTC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCCCCAACTCTCG	ref_5240_fdr	137	72	139	144	86	130	81	120	69	123
TCGGGAACATCTTAGT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTTGGGTTAGCTA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TCGATCTACCGATATC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGCCTTAATTGAA	ref_5240_fdr	54	45	48	40	41	31	42	36	48	38
TTTAGTACACCTGTTG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CGGATTTTTACATTCT	ref_5240_fdr	17	25	23	14	7	21	16	22	19	23
GGCTGGCCCCAATTCA	ref_5240_fdr	33	36	43	36	19	46	29	30	29	28
TATAAGATACACTGCC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TAATAATATTATTCGT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTACCGCCTCTTT	ref_5240_fdr	7	6	8	6	4	4	13	2	4	6
CTATTCCTACTGACGC	ref_5240_fdr	1	0	0	0	0	0	1	0	0	1
TCTGATACTGCTTTAG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCACATCGGTACA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGTTCGAGCAGC	ref_5240_fdr	0	4	1	1	2	1	2	6	0	0
ATGCCAATACCGTATG	ref_5240_fdr	40	33	44	38	45	55	39	42	31	28
GTCGGGTCGCGTCGCT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GATCGCTCGATTCCCT	ref_5240_fdr	16	14	13	16	9	20	17	24	12	10
ATTCTTCGTCGTCCGC	ref_5240_fdr	43	22	61	38	23	32	23	37	32	34
GAACTCGAACTACCTA	ref_5240_fdr	8	8	23	27	10	18	15	16	19	18
ATATACCTTTCGGATA	ref_5240_fdr	30	24	32	31	19	24	20	36	22	31
GCATTGACAAAGTTCC	ref_5240_fdr	5	4	5	9	3	9	1	5	2	6
TGATTAATCATCCTGT	ref_5240_fdr	15	9	11	11	9	20	12	17	11	21
CGAGCATACAGTAATT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGGTGTGTACAA	ref_5240_fdr	33	22	56	30	22	39	13	27	21	27
AGTCCCCTACGGATCG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTAATCCGCGTTT	ref_5240_fdr	10	5	13	17	7	12	9	11	14	9
ATGTAGTACTTCCACT	ref_5240_fdr	20	8	14	17	13	14	13	14	7	15
CGAGTACTTTGAGCTA	ref_5240_fdr	92	73	106	109	68	80	67	83	86	92
TTACGTCACGGCCTTA	ref_5240_fdr	32	18	39	45	23	37	23	33	26	35
ATGTAGTGTTGCAGGC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCAGCGCATCCTC	ref_5240_fdr	6	1	7	1	4	3	1	6	6	1
CTTCGATAGACGGCGC	ref_5240_fdr	22	24	14	21	12	17	18	18	19	17
AGTCCTGCGAATTCGA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
ACGATATCTCCGGCTC	ref_5240_fdr	41	22	41	54	28	41	34	41	28	40
ACTTAGCCCGCCTTTA	ref_5240_fdr	7	3	16	10	5	11	9	12	7	11
TTGTACCATCATTTTT	ref_5240_fdr	140	119	186	175	143	141	144	155	133	149
TATTCCGAACTCATCA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CGGTACCGGATACGCT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGCGTGCTTGAAG	ref_5240_fdr	11	11	14	18	12	7	3	16	17	9
ATAGTGGCATATGGGC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CACGTTCACTATTAGC	ref_5240_fdr	6	18	21	15	21	22	12	12	19	16
GATGGCGTAGTCTGGC	ref_5240_fdr	4	5	10	6	3	11	5	6	4	6
CAAGTCCGACGCGGGC	ref_5240_fdr	33	49	40	19	46	24	37	26	33	21
GTCTGGTACGATCGAG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAAGATAAGCATT	ref_5240_fdr	28	26	37	20	35	30	23	26	26	28
GCCTTCACTCGTCCTT	ref_5240_fdr	46	43	64	62	46	49	31	49	49	53
GACTTTAAAGCTTTCT	ref_5240_fdr	17	17	22	20	13	24	9	9	17	23
TGATTTACTGATCGAC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTGATTTGGAGCAGAC	ref_5240_fdr	52	45	58	33	32	38	40	31	31	26
GTCAGCACCTGGGTCG	ref_5240_fdr	2	1	0	2	0	2	1	1	3	2
AATCGGCTGCGTCTGC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GAAATACAAAGAACGC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTCAGTTATAGGA	ref_5240_fdr	17	7	22	18	9	24	15	17	14	18
GCCTTATCTGTATCCG	ref_5240_fdr	13	11	19	11	11	19	4	13	18	6
TAAGCTCTGTTTAGTT	ref_5240_fdr	81	61	99	97	83	101	86	87	77	68
TTAGTATCGAGATCGT	ref_5240_fdr	4	4	10	8	4	7	10	8	9	6
TCGTAACCGTTGTCCT	ref_5240_fdr	99	66	121	103	68	104	71	96	81	79
TATATGGTTGGACGTT	ref_5240_fdr	59	39	61	56	27	43	43	36	44	46
CTTGAACGTGATGGGA	ref_5240_fdr	190	145	243	224	164	140	169	197	156	208
TCCTCTTCCGTCTATT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCCCTATATCTGC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTACTGGATCTG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TAGAACAGTATTTGAG	ref_5240_fdr	36	26	37	28	27	24	22	31	22	33
GATACTTCTGTGCGAG	ref_5240_fdr	24	16	29	24	23	26	24	18	25	25
CCACTGTATGGGTGTC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGACTCTACGGAG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCTTCGAAATGCC	ref_5240_fdr	39	52	45	29	43	20	52	43	44	31
CTCACGGAGGGTGAGA	ref_5240_fdr	19	17	20	12	13	13	15	7	13	15
AGGTCCAAGAGTCCGT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTATCGCATTTGATCG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGCAAGTTTAGTTTGG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTTACGTTAGTTCGTA	ref_5240_fdr	38	34	57	39	27	41	28	40	28	32
CTGTAACTTTGGGCGG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGAGTGGCTAAGGTGA	ref_5240_fdr	25	26	29	29	34	27	28	21	30	31
AGTGGTTCAACTACCC	ref_5240_fdr	1	1	3	5	4	7	4	9	0	1
GTCACTCAGAGGGGTC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CACAAACCCATTGGAT	ref_5240_fdr	146	90	186	148	112	138	127	110	122	130
TAATCGTCAATTATAG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TATTACGGCCGCACGT	ref_5240_fdr	25	30	26	32	20	27	29	23	27	22
CTCTTTACATCTATAT	ref_5240_fdr	10	8	17	17	9	11	9	11	6	16
CATGGGGCTTCTCCTC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CAGCAATCTCTCAGCG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGACGTTCAAAACGTA	ref_5240_fdr	17	14	21	23	21	32	18	23	15	17
GCTCTGGCTTTATGAG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCGTATGATTACA	ref_5240_fdr	10	4	14	7	14	11	6	7	7	12
GGCCCGTTGGCAAATT	ref_5240_fdr	76	54	87	71	46	74	44	67	52	84
GATCGCGTTCTGTAAG	ref_5240_fdr	9	6	12	13	11	12	13	21	15	14
TGCAGCCTCCTGTGAA	ref_5240_fdr	31	26	24	26	36	22	18	23	22	20
ATGCCCTTTGTAATTC	ref_5240_fdr	108	117	131	155	117	112	106	111	124	108
AATGTCCGCTAATCGC	ref_5240_fdr	5	4	9	8	6	11	2	5	1	3
GAAAACCTCCGTTAAA	ref_5240_fdr	23	23	29	15	19	32	21	16	11	18
TAGTAAAATGGTCATG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAATATATGTTCG	ref_5240_fdr	123	84	182	141	109	126	122	137	124	136
TTGCTGTCTGTCAAGG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCTTTCACCGCTT	ref_5240_fdr	26	22	34	45	25	26	24	25	29	25
CGCCCATCGGATCCCC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AAAGCTAGAGGAAGTG	ref_5240_fdr	6	2	2	5	4	3	7	0	2	1
TACGGCCACCTTTTGG	ref_5240_fdr	56	60	83	53	58	52	32	46	40	58
AGCCATCCGCGTGAAA	ref_5240_fdr	3	12	10	8	9	7	9	13	6	7
AGATGTGGGATAGTGG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGTAAAGCAGAAAAAA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CGAATCTAAACTGAAG	ref_5240_fdr	24	10	27	25	24	22	23	26	18	15
GGGGGATCTTGGTGTA	ref_5240_fdr	3	1	3	5	2	5	1	3	4	10
TTTCTTCGGGGACAAA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTGTGTTCCGGAA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGGTGAGAAATTG	ref_5240_fdr	11	10	15	9	8	9	4	8	7	8
GTGACACCTGAGCACC	ref_5240_fdr	3	1	5	4	2	3	4	5	6	2
TATGAGAAGTCCTTGT	ref_5240_fdr	22	17	28	27	15	13	21	19	22	15
CACCTGCCCTTCCGGT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCACAGTTTTCTG	ref_5240_fdr	104	102	136	121	103	83	112	115	99	106
TTATGTTCTGCTACCC	ref_5240_fdr	3	1	5	1	0	0	1	2	2	1
CGGAGCGCGTTATGTA	ref_5240_fdr	45	29	59	68	32	60	59	49	46	42
AATCACCTGTATTTGC	ref_5240_fdr	74	78	72	70	97	60	70	66	78	57
TAATTTTCATCTTCGA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AATCTCGATTTGGATC	ref_5240_fdr	8	10	15	10	10	10	10	4	10	16
GCCGAATCGGGCGAGT	ref_5240_fdr	30	27	26	13	20	33	23	15	24	25
TGCTCGGTGATGTCGA	ref_5240_fdr	102	46	117	84	50	82	78	77	56	74
GCAACCGACATACGTT	ref_5240_fdr	15	6	20	15	6	11	18	11	9	7
GACGAGTCCACCTTAA	ref_5240_fdr	32	23	35	34	29	38	19	18	21	22
GTTTTTTTCCCGCCCG	ref_5240_fdr	33	16	53	21	18	36	18	32	21	23
CAGTCGGTATTAATTC	ref_5240_fdr	1	0	3	0	1	0	2	0	0	2
CTCGGTTCTGTTGAAG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGACTTCCCAACT	ref_5240_fdr	64	67	113	87	61	76	66	79	63	79
AATCTGGTATGTTCCC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
ACAAATATTGACCGTG	alt_5240_fdr	9	10	16	10	10	13	15	7	15	5
GCATCGTTATTTTGTA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TAATATCATCAGTTTT	ref_5240_fdr	1	1	3	2	1	6	9	5	0	5
GCGCCCTTTCTAGTCA	ref_5240_fdr	51	47	55	55	46	40	45	42	43	39
TTTAAGTAACGTCTCC	alt_5240_fdr	11	5	11	11	10	12	5	8	15	10
ACTGGTGTTCGTTTCA	ref_5240_fdr	5	5	7	10	2	6	8	8	10	6
ACGCCTCCCCTCAAAT	ref_5240_fdr	21	47	25	31	53	32	57	27	50	29
TATTCGTCAATTATAG	ref_5240_fdr	245	217	330	303	183	256	207	251	226	238
AGGCGTTCCACCTCAG	ref_5240_fdr	48	34	67	35	30	38	36	37	34	27
GGCGACCCCTCATGGC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GGTGCCAAGAACAGTT	ref_5240_fdr	30	29	49	46	44	38	52	27	46	30
CCCCCCCAGTGATATC	ref_5240_fdr	77	59	87	84	52	86	44	64	77	72
TTATCTTCTAGGGGTG	ref_5240_fdr	22	11	39	25	20	29	28	28	16	23
GTTATTAAAGAGAGCG	ref_5240_fdr	45	42	47	61	44	47	36	46	32	55
CCTTCTTGTCGCTCGT	ref_5240_fdr	121	82	130	144	81	117	75	119	86	111
CTTTAGAATTTACTCG	ref_5240_fdr	21	30	45	40	26	20	25	28	25	14
TCATGCCTGTTCTCTA	ref_5240_fdr	37	31	41	55	41	38	34	43	39	41
GATACCACCGCACTAA	ref_5240_fdr	119	111	125	122	102	102	80	103	115	90
TCCGCCCCCTAACTGC	ref_5240_fdr	16	12	12	24	20	14	4	21	17	21
ATTGGGTTTTTCGAGG	ref_5240_fdr	55	44	63	63	39	49	32	49	54	54
ATCCGATTTTTGAGAT	ref_5240_fdr	76	50	93	74	43	60	78	68	59	52
TTCCTTGAATTCTTTA	ref_5240_fdr	20	24	62	32	30	24	27	41	24	26
CTAGCAATCCTACGAC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATTCAGCATTCG	ref_5240_fdr	6	5	18	4	3	7	4	11	6	12
TTCGCACCTACGCATG	ref_5240_fdr	41	44	42	38	38	46	48	42	48	39
CGTTTTTTGAATCAGT	ref_5240_fdr	26	14	22	17	15	17	17	13	23	32
ATATTACATTGGGATA	ref_5240_fdr	17	31	39	37	26	29	36	39	15	31
AAGCACACATGAGACG	ref_5240_fdr	96	51	93	70	41	74	82	69	56	79
TATTCACGAGCGACTG	ref_5240_fdr	43	30	45	59	27	30	39	43	32	37
TTAGACGTCCTTAGTT	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GAAGCGCGTCCGCCAT	ref_5240_fdr	15	12	14	13	13	8	17	18	9	7
TTTAACATCTTTTATT	ref_5240_fdr	5	5	21	10	11	9	12	10	10	9
TGTAGATTGGTCACGC	ref_5240_fdr	4	2	6	3	4	3	4	1	0	9
ATCGTGGGCACACATA	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTCTTTGTTTAC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGGTGCCAGTTTG	ref_5240_fdr	34	24	50	24	17	28	20	41	28	28
CCCAAACGTTACTTAC	ref_5240_fdr	3	3	2	2	6	3	2	2	7	2
TCTACCATCTACGACT	ref_5240_fdr	19	16	31	37	26	21	23	23	30	23
CGGCGTTGTTTTTGCC	ref_5240_fdr	192	113	234	190	85	152	138	192	119	156
GCATATGGTTCGCCAT	ref_5240_fdr	21	12	24	26	9	19	15	19	7	11
CAATACATTTCTACTC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GCATTCTGCGCAATCA	ref_5240_fdr	39	21	53	68	23	57	28	39	40	45
TATAACTTGCGGTCGT	ref_5240_fdr	72	70	68	72	54	67	67	73	56	65
CAGTATCGTTTTCGCG	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TATGGTACCTGTTAAC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
GAGGAGCGCGGGCGCC	ref_5240_fdr	28	22	48	33	32	28	28	21	26	24
CGCTCCTTTTTGGGCT	ref_5240_fdr	15	14	14	19	20	12	11	13	12	10
CTCTTACCGTTCTAAA	ref_5240_fdr	9	8	15	9	8	6	12	10	3	13
TAGATGTAGTAAAGCC	ref_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGAGTAGCGGCGT	ref_5240_fdr	19	7	21	18	24	21	26	12	17	17
GTTCTCGGATAAGGTT	ref_5240_fdr	22	23	34	37	25	31	29	35	23	26
TATACGATACACTGCC	ref_5240_fdr	94	137	114	104	166	100	129	96	158	84
CGGTAACCTCGTCTTG	ref_5240_fdr	56	39	37	35	41	43	40	24	48	42
GCGCTCCACGTATTCC	ref_5240_fdr	54	28	54	60	37	48	42	46	37	37
CTCCGGCCCAAGGCGT	ref_5240_fdr	130	97	158	136	103	86	88	128	124	130
AGCCCCGTCGGGGCCG	ref_5722_new	141	105	138	135	136	122	120	126	129	121
TAGTGTTGAGGTGGTG	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TTATAAAACCTTCGGG	ref_5722_new	25	8	34	25	9	23	14	23	18	24
TCCGCATTGGGCAAGA	ref_5722_new	104	54	126	119	74	92	70	88	57	93
TTTCGCCATGCAAGCG	ref_5722_new	31	24	39	30	24	23	22	33	28	24
ATGGTCCTATCCGACG	ref_5722_new	37	11	50	27	23	34	25	29	20	26
TGTTTCATGACTGGCG	ref_5722_new	60	36	66	70	22	78	41	60	56	68
CAATATATGGAGCTAC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TCAAATGTGACTATGT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CCCAGCCCACAGTTCT	ref_5722_new	31	31	56	46	33	34	35	43	46	35
CACCCATATCAGAATG	ref_5722_new	97	48	113	98	61	90	73	83	76	75
TTTCTCCGCGGAGCTA	ref_5722_new	51	31	63	48	37	40	32	53	32	48
AGGAGGTATTCCCTAT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
ACCTTTGTCATACGCT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
ATTAACATTTGGGTTA	ref_5722_new	91	83	109	74	62	97	60	86	77	59
GTCACGAGGCATCCGA	ref_5722_new	25	12	26	18	12	20	16	19	7	16
TTAACCGGCCCTTCCG	ref_5722_new	105	77	126	104	71	95	78	106	96	80
CTATGATACCGTGTTG	ref_5722_new	0	0	0	0	0	0	0	0	0	0
AACTTCGGGCGAGTCG	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TCGCTAGCGAAAAGTG	ref_5722_new	70	35	96	81	53	68	57	51	66	65
TCACTCACCAACACTG	ref_5722_new	161	107	218	150	101	151	107	147	123	134
TTCCACTAAACTACCT	ref_5722_new	98	65	123	136	62	71	60	111	56	94
AGCAATATGCTAGCAT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TAAGATTGATAATGTA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
ACCTATCCCCCGCGGG	ref_5722_new	0	0	0	0	0	0	0	0	0	0
ATAAGGTATACATGAT	ref_5722_new	101	59	118	113	66	107	65	90	68	115
CCTGGCAGTCCCTACA	ref_5722_new	40	21	82	51	28	48	37	42	30	49
TCCACATTACCCTTTC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CCTTAGCTAATCCGAA	ref_5722_new	39	24	56	46	29	41	21	41	40	33
GTACGGAGTTTTTCCT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CCAAGTCCTAAGGTGC	ref_5722_new	38	15	36	37	21	25	21	25	23	35
CGTATACTATCCCTGG	ref_5722_new	30	21	49	38	19	30	12	32	19	35
GCAGTTTCGTTCCACT	ref_5722_new	41	23	53	55	35	44	26	40	32	29
CTTATGGTTCTGAAAT	ref_5722_new	89	36	78	58	36	52	53	60	37	45
GTCTCTGTTTTGCGAA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CGGTGTTTCGCTTGCA	ref_5722_new	151	77	184	156	88	153	80	154	104	148
AGAGCAAGCGAGGATT	ref_5722_new	155	84	144	152	88	150	82	134	104	130
GTCAAGCGCGGTTCGA	ref_5722_new	26	12	20	32	10	25	8	23	19	17
CCTTTTTCATGCTTGT	ref_5722_new	110	69	133	94	85	108	65	90	89	88
AGGATACTTTAGGGCT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TGTCTAACCCACGCCA	ref_5722_new	151	94	179	145	89	129	95	132	91	139
CCTATCGGTGAACCTA	ref_5722_new	64	43	82	71	42	74	44	62	52	60
ATGACCGTAACACCGC	ref_5722_new	19	13	29	22	15	25	16	9	16	8
GACGGTCTCTTTTGCC	ref_5722_new	101	82	158	112	82	130	109	106	92	106
GAGTAAGCCTAGCTTT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
GTGGGTATATTTGTGT	ref_5722_new	82	50	106	77	71	84	71	71	60	73
ATTAAATCTTTGCGCG	ref_5722_new	17	17	26	21	20	23	21	20	23	25
CCTGTTGACTCAAGCC	ref_5722_new	17	15	22	19	17	22	13	14	15	16
GATCAGCGATGAACCG	ref_5722_new	0	0	0	0	0	0	0	0	0	0
AAGGTGTGTCATCTAC	ref_5722_new	18	14	22	15	14	18	19	18	17	19
TGAACCTTGATTGGGC	ref_5722_new	7	5	11	7	5	3	12	8	7	2
TGTCTGCAATTAAGTG	ref_5722_new	3	2	4	9	1	1	1	5	1	5
GGATTACAGGGCGTCT	ref_5722_new	127	97	184	127	72	141	98	125	103	123
GTTCTACGGCCGTAGG	ref_5722_new	38	28	60	57	27	58	22	43	28	44
TTCATACCTCCCGACC	ref_5722_new	6	19	15	13	12	11	11	13	14	8
ATATGTTACCTCCACG	ref_5722_new	6	3	7	11	3	7	8	5	9	6
TACTACTTTGGTCACA	ref_5722_new	25	8	21	26	10	28	13	16	12	11
TGCGGGGGTTGCACTA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
AGACGGGGTCACCCCC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CCGTACATGTCTTTAA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CCATAGCGGGAGCACC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
GCGGCACCTTTGAACT	ref_5722_new	70	48	75	72	40	82	58	57	47	76
TGGGTAATGTATCGCT	ref_5722_new	95	49	115	107	54	85	47	75	41	77
GAGAACAGTCTCGAGG	ref_5722_new	170	96	232	170	132	162	112	171	111	153
CGTGGCTCGCGGTCTA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
ATACCATTCGTTAGAT	ref_5722_new	3	2	2	3	2	4	8	5	4	2
TATGTTTATTCACCCG	ref_5722_new	21	9	24	10	5	18	14	7	9	21
GCAACAACGTATTAGT	ref_5722_new	41	33	36	36	18	23	33	30	24	28
CCTTATTAACCGGGGG	ref_5722_new	19	23	41	33	24	20	21	20	13	12
CATCTCTTCATCTCTC	ref_5722_new	339	175	416	377	195	353	180	328	182	309
GAGCATTTTATAGTAA	ref_5722_new	20	18	30	23	13	23	7	26	15	23
CCAGTGCTCCCCCGGC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TGTTCCAAGGGTTAGG	ref_5722_new	0	0	0	0	0	0	0	0	0	0
AACTTTTGGTAGATCC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CTCGCATTCACCATGC	ref_5722_new	56	38	62	61	50	58	47	62	44	44
CAGTTTTACGTGAGGA	ref_5722_new	14	9	16	22	10	13	4	16	10	15
ATGATAAAAACTGCGC	ref_5722_new	84	44	85	89	55	85	49	93	49	57
ATTTTGGATGAGTGTT	ref_5722_new	24	11	43	31	17	51	18	20	14	28
CGGCTCTATCCTTTGG	ref_5722_new	21	4	12	15	11	18	14	24	21	17
AAGATTACGCGATATC	ref_5722_new	87	35	114	69	39	76	52	84	41	56
TTCCGGATTGTTAGTA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CCGGTAGCGCATAAAT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TTCCTCCTTCTGAGAC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
GCTTACTCACTATGCT	ref_5722_new	19	15	33	37	16	32	15	22	33	25
TAAACGGGGGCACGTG	ref_5722_new	14	12	16	13	22	17	16	8	8	12
GTGCCAATAACCGCCC	ref_5722_new	90	55	114	112	51	77	52	70	59	78
ATCTTAGGAACCTCGC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CCTCTAGTCGCGTCTG	ref_5722_new	206	102	251	222	125	185	108	200	150	168
ATCCTAGTTAGCTCTC	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TAATTTGATCCGCATT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
ATTGTGGTCAGATACA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
AAGACTCCGCTACCCG	ref_5722_new	9	12	21	13	21	15	17	15	17	14
TTTCACGACACACCCT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
CACAACTTCTGCCATT	ref_5722_new	4	7	7	7	5	5	6	3	5	4
TTGTTGATCGATCCTT	ref_5722_new	61	55	96	78	62	113	61	91	39	83
TGTAATAGCACGTGTA	ref_5722_new	50	33	85	54	33	48	38	50	33	59
ATTTGCCAACTCGCTA	ref_5722_new	101	49	104	90	62	81	45	92	82	76
GACAATCATGGATTAA	ref_5722_new	49	21	62	45	28	39	31	50	36	26
ACCTTTTGAAGCCGTT	ref_5722_new	0	0	0	0	0	0	0	0	0	0
GCACTATTCGTTTAAT	ref_5722_new	56	18	64	55	36	44	39	53	45	49
GGGCCGTGTTAACTTG	ref_5722_new	0	0	0	0	0	0	0	0	0	0
TATCGCTGCCCCTCAA	ref_5722_new	0	0	0	0	0	0	0	0	0	0
GCTCAGTTGGCTCACA	ref_5722_new	125	61	141	121	62	96	68	98	78	87
TGACAGCGCTCTTGGT	ref_5722_new	10	11	11	25	10	14	12	11	8	16
ACTGACAGTGTACCTT	alt_2272_reverse	33	55	29	26	38	14	25	27	59	23
GTCTTTCGATCCTGTA	alt_2272_reverse	48	81	49	43	58	39	60	31	62	44
GAATAGCCGTCTGTAG	alt_2272_reverse	10	15	11	10	19	11	17	13	19	10
TGCCGTGCCCAAGTAT	alt_2272_reverse	46	53	46	45	57	46	65	44	74	24
ATTATACTTCCTGTGA	alt_2272_reverse	14	17	14	15	7	7	20	6	25	11
CTACCCATTATTTCGC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
ATAGAACTTAACTGCC	alt_2272_reverse	8	8	3	6	6	5	3	4	5	9
GATCTGTGGGTTGTTT	alt_2272_reverse	25	44	31	25	34	27	25	15	46	21
TTCCTGTGTCGCACTA	alt_2272_reverse	26	59	30	48	52	32	44	33	51	30
ATCCGTTATACCCCGG	alt_2272_reverse	15	27	23	11	30	10	29	12	19	11
CGGTCCATCTCCTACT	alt_2272_reverse	19	32	34	30	48	25	31	18	51	12
TTTTCTAGAACAGTTG	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
CATTATGTCTCGGTGG	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GGACTAAGCTCGGTCG	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GACGGCTGGGTTTGTG	alt_2272_reverse	10	13	5	1	12	8	7	7	11	4
TGCGGGGACCACTACA	alt_2272_reverse	47	62	40	41	50	52	63	50	71	26
AGAGTTGGTAGGGGAT	alt_2272_reverse	46	77	42	38	60	44	78	31	82	32
GGACGATTCGAGTAGT	alt_2272_reverse	44	73	65	60	81	74	66	53	83	54
GGGTATCGTGCGGTCC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
ATACAATAACCTGGTT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GATTATCGTGCGTTGC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTCACAGTTTTTT	alt_2272_reverse	52	72	75	46	61	41	82	61	81	44
CATTACGTTTTACTGC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTGCGTTCCGAGA	alt_2272_reverse	28	51	28	19	56	27	46	44	51	25
GTTTCGTCTGTGCTTC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
CCATGGGCGTGTCTAG	alt_2272_reverse	5	9	4	6	15	6	10	4	12	3
TCCACCCCAACCCGCT	alt_2272_reverse	11	40	31	32	33	32	35	16	44	28
TCCGCCAGGCACTTGT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	1
TCATTCGTTGCCCAGA	alt_2272_reverse	56	93	78	64	98	63	106	63	99	69
TATCGTGATTACCAGG	alt_2272_reverse	38	56	47	35	48	36	62	28	63	39
GTATTATTTTCTCATC	alt_2272_reverse	70	97	83	72	98	74	102	61	84	55
ATGACGGGTCTAGACA	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTATAAGTGATCT	alt_2272_reverse	4	14	5	7	9	4	8	7	8	7
ACTATGACGAATTGTA	alt_2272_reverse	27	31	37	17	30	27	32	26	40	24
TATTTCATCCCCTAGT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTGGTGACCGGTT	alt_2272_reverse	27	63	42	39	72	32	72	29	72	23
CTGGGTCACCCTGGCC	alt_2272_reverse	35	68	46	37	58	31	79	35	72	32
TATCTGAAAGGTCCTC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGAGCCCTATAGT	alt_2272_reverse	49	76	57	48	66	44	117	38	96	43
GCGCTTGCATTGATTT	alt_2272_reverse	0	4	4	3	3	0	4	0	2	3
TGCTAAAAGAGTAATG	alt_2272_reverse	6	9	3	10	5	7	11	8	8	3
ACGGTGCTAACTCTTT	alt_2272_reverse	62	97	101	82	97	65	126	60	135	75
GAATTGATAGAGTAAA	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
ACTACTATGTAACGGT	alt_2272_reverse	8	11	12	5	12	13	4	13	5	7
CATCTCCCGCATCCTC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGTCAGGCCGTAA	alt_2272_reverse	9	21	7	18	33	10	27	15	21	18
CGACTTTAAGTGCCGT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGGGTTAGACTT	alt_2272_reverse	26	42	43	23	55	25	40	37	57	16
GCTTCTAGGCGCAAGT	alt_2272_reverse	44	54	55	47	70	45	69	33	88	63
GGTGGCTTATGCATCC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGATCAATACCAT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGCAATCATGCGG	alt_2272_reverse	18	21	23	14	33	15	27	14	21	26
TTGTCTATATCACCGG	alt_2272_reverse	8	4	5	5	8	5	10	3	3	2
TGGCTTACCCTCTAAT	alt_2272_reverse	5	25	10	14	46	16	40	12	27	9
TCAATAATACATAATT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGCCCGTGGTGTA	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTAGAGACAATGA	alt_2272_reverse	24	29	24	20	40	18	27	23	37	27
GACGTCACCGTAGGGA	alt_2272_reverse	34	37	49	43	41	52	57	30	41	25
GGGGTCTAATCCCTAA	alt_2272_reverse	18	17	17	20	16	14	23	12	20	15
GGCGTCCGGTTCTGAC	alt_2272_reverse	24	19	24	21	24	16	41	22	34	21
ATTTAGTACTGCAGGG	alt_2272_reverse	20	29	27	14	27	16	34	23	41	23
GCTGACCTTCACCTCG	alt_2272_reverse	9	26	15	13	15	9	32	5	21	10
GATTGTATCTTGTCGT	alt_2272_reverse	10	15	9	11	19	15	7	10	6	5
GATGAATCTTTCGCTA	alt_2272_reverse	238	332	313	262	362	220	388	253	399	217
GCGAAAAAATTACATT	alt_2272_reverse	48	46	51	35	61	46	71	37	66	34
ATCATCGCTATCGGGA	alt_2272_reverse	38	48	41	50	57	52	50	31	61	31
CCTGTTCGTTGGTGGA	alt_2272_reverse	6	9	2	2	17	8	12	2	12	2
TTACCGTTATACATAT	alt_2272_reverse	60	59	58	51	80	52	89	54	64	47
GTTAACATTTGTTCAT	alt_2272_reverse	15	29	23	19	20	14	18	15	22	16
GTGTTACAAGGCCTGC	alt_2272_reverse	19	37	19	17	31	23	37	17	37	22
CTAATACATATTGTAA	alt_2272_reverse	43	51	40	35	51	46	63	29	74	33
AGTCTTTGGTGTTTAT	alt_2272_reverse	6	19	11	11	17	11	14	11	19	4
AGCACTTTCGGTACTA	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGGCTTATAACTG	alt_2272_reverse	9	17	15	11	16	15	19	19	15	13
ATATAAGACACGATGA	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GGCGGTGTCACAAATC	alt_2272_reverse	19	21	8	14	21	14	22	8	23	16
CGAAAGCTCGTGCCCT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCTAATGTAATCC	alt_2272_reverse	46	32	38	32	45	23	54	26	47	24
TACAGCCTCCCACCCT	alt_2272_reverse	6	6	3	4	20	4	12	5	13	3
TGTTGTTGACCGGCTT	alt_2272_reverse	1	9	2	3	6	3	15	3	6	4
CTCCTTTCGTCCTATG	alt_2272_reverse	45	53	43	39	75	38	71	46	66	33
TTCCTTCAGAATAAAT	alt_2272_reverse	21	24	25	25	33	21	51	30	28	20
GAAGAGTAGATTTGTC	alt_2272_reverse	22	29	25	22	29	16	33	24	34	20
CATCCCTTGTCCTATA	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TCCAAATGTGAGTTGG	alt_2272_reverse	26	51	33	31	45	29	49	32	54	19
AGACTATTGATAACTA	alt_2272_reverse	34	52	44	41	37	17	44	34	29	23
ATTTAGTTAAGCCCAA	alt_2272_reverse	9	18	10	8	21	9	19	13	20	7
AGTTTTGTTGGTAAAC	alt_2272_reverse	18	23	30	15	34	18	38	20	36	21
ATGTACGTTATTTTGG	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTGACCGGGGGT	alt_2272_reverse	7	6	9	6	8	6	14	2	11	2
TACGATACCGGTTATT	alt_2272_reverse	65	77	80	74	100	57	107	50	102	52
GCGTCAGTCGGCCGGC	alt_2272_reverse	9	40	15	22	51	23	46	19	46	15
CTAGAGGAGGGCTGGT	alt_2272_reverse	14	33	22	14	29	12	37	13	22	16
GTCCCGCCATCGATGG	alt_2272_reverse	31	43	42	29	32	31	41	29	48	18
CCTGTGTGCCTTAGAT	alt_2272_reverse	1	3	2	1	11	3	2	2	9	1
TATTTCATCGTTTGCG	alt_2272_reverse	18	40	36	19	27	15	28	16	47	23
AGTTTTGTCTAGAGGA	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCTCTGGGCTTTT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TATCCAACTCGAATGG	alt_2272_reverse	208	247	256	229	216	215	261	235	239	235
TACACTTTTTGCTTAG	alt_2272_reverse	13	34	27	26	32	18	35	17	43	22
TGTCATACGACCTCAG	alt_2272_reverse	82	129	106	117	120	113	133	103	127	111
GGATTAGTTTGGGGGT	alt_2272_reverse	30	32	39	24	34	27	41	19	28	20
CCTGCGTCTATTCCTC	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
TATTTAGATTGATATG	alt_2272_reverse	48	124	65	68	99	56	104	59	129	59
GATCTTAGCCCCTAGT	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
AGATTTAACTGTGCGG	alt_2272_reverse	0	0	0	0	0	0	0	0	0	0
AATGGTTCCGATTTAA	alt_2272_reverse	8	14	15	13	19	13	29	16	25	12
GATAGTCTGTAAATGT	alt_2272_reverse	15	34	11	18	15	13	24	18	27	15
TTCGCCATCTCCGTTG	alt_2272_reverse	24	49	34	41	45	32	54	34	55	25
CCGCCTCTGAGTTATC	alt_2272_reverse	8	13	5	14	9	5	20	6	18	9
AGTAGAGCACTGAAGC	alt_2272_reverse	45	41	46	27	70	39	72	18	56	39
GCTGTGCTACGAGCTC	ref_5683_new	4	3	6	5	1	5	2	3	0	5
CGTGATGTATCTTGAT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GTTGGCATACCCTTTT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GTCTGACAACTTTGAT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
ACATGCATGAAGTCTT	ref_5683_new	40	18	25	47	18	36	24	44	21	28
GCCGCTGTGTTGTCGT	ref_5683_new	8	5	10	7	6	9	12	10	8	8
CAAAGGCTACTTGTCT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
CGGACTCGCATGGCTG	ref_5683_new	15	8	11	10	9	13	8	8	8	17
CGCTTTGCGGACATGC	ref_5683_new	26	18	25	29	26	29	31	18	25	22
AGTGTGGGATTCAACT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
CGACGTGTGGAATAGC	ref_5683_new	79	87	107	88	89	80	113	91	113	82
TTAAAGCCTATGATGT	ref_5683_new	93	82	99	80	70	73	65	71	70	80
TCAATACATCGCTCAC	ref_5683_new	21	14	43	44	28	25	26	30	21	30
CTAGCAACCGGTTCAC	ref_5683_new	64	51	80	68	44	53	49	65	43	62
GGCTGCCATTCCTTAG	ref_5683_new	126	63	137	91	66	102	62	120	68	97
TATATCGCCCATAGTG	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TTCCACATCGTGATCA	ref_5683_new	75	46	79	61	33	94	41	53	33	64
CTCTCCAGTCTACCAC	ref_5683_new	48	25	63	31	40	36	55	31	26	50
ATCTAGTATGCGGTTT	ref_5683_new	9	8	17	6	8	7	7	6	9	7
GGCAGTCCACGTTTCG	ref_5683_new	40	32	35	48	23	48	28	38	25	43
CCGCCAGCTATCATTT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
ACGTTTCGCCGAATTA	ref_5683_new	49	24	38	30	26	39	25	40	17	27
CATTTCTTGAGTAAGC	ref_5683_new	178	108	219	175	114	190	118	166	120	147
GTCCGAATCAACAACG	alt_5683_new	171	125	228	212	123	191	126	165	112	186
AACGCCTTCGATTGTC	ref_5683_new	21	25	35	28	38	34	33	38	34	31
AGGGATGGAATCACCA	ref_5683_new	51	47	80	74	27	63	44	50	52	50
ATAGAATTCTTCGTAT	ref_5683_new	29	20	30	27	9	22	28	27	22	17
TAGATCTACTGCAAGA	ref_5683_new	114	67	108	73	64	81	79	93	68	95
GACGTTTCATAATATG	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GTGGGGGCAATCTCAA	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GCCGCCGACAATGATT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TGCTGGGGTGTCGCTC	ref_5683_new	57	35	55	49	39	63	32	55	42	46
TCGCATCCAGGTTGTT	ref_5683_new	33	26	35	29	21	37	21	24	24	23
CAGCCTCGATATCTAG	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TAACAATGCAAGATAT	ref_5683_new	193	69	236	180	159	218	125	181	138	174
CGCGTCAATGGTATCT	ref_5683_new	21	11	27	28	23	41	15	19	20	23
TTAGTTAGATCCTGCA	ref_5683_new	47	32	55	43	21	27	39	33	28	32
TCTTTTGAATGTCTGC	ref_5683_new	67	55	64	60	48	72	41	53	45	56
TGGCCGGCTCGATCGG	ref_5683_new	0	0	0	0	0	0	0	0	0	0
CCATCTTGTGGTCTGT	ref_5683_new	64	40	72	69	29	62	54	49	42	57
CAGACGTTTCTTTCCG	ref_5683_new	29	19	38	29	12	25	22	16	5	32
CCAGTATGTCAATCGC	ref_5683_new	43	17	34	42	29	33	19	36	27	22
TACCGCTAGTGCTGTT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
AAATCCGATCCTTGCC	ref_5683_new	29	17	36	45	22	44	15	24	17	35
GCTAAGACGTCTGCTA	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GCGCTCTATAATTATT	ref_5683_new	104	86	140	125	77	98	87	91	58	104
CTGTTCCTGATTTTGT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GTTAGGTACATGGTCT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
ACAAGTCTCTGGGACA	ref_5683_new	29	21	25	26	14	17	26	29	27	27
CCAGTTTTGAGTTTCC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TTAAGGATCCTCATAA	ref_5683_new	40	20	44	32	19	41	24	44	27	32
CCGGACTGCGCGCGAT	alt_5683_new	22	26	31	14	7	28	20	28	15	15
TATTGGCTTTATCATA	ref_5683_new	0	0	0	0	0	0	0	0	0	0
AGAATGCCCTGTGTGC	alt_5683_new	194	133	185	162	118	172	133	158	118	139
TTCTTTCTGCGGCATG	ref_5683_new	45	23	69	49	31	56	46	51	37	47
CGGGTGATTCGCGTTA	ref_5683_new	81	35	63	61	36	62	44	63	56	39
TATCTCGGCACAGTAT	alt_4994_fdr	20	5	17	7	23	15	7	23	12	17
TAATGGACGCCACTTC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TCCATTTCCCCGATCG	ref_5683_new	51	164	57	53	163	47	172	62	154	51
CGCCCAGGGATTCGTT	ref_5683_new	53	50	97	84	47	67	66	86	36	57
TCCGCTCTTAAGGGGC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
AATTTTGTACCAGTTT	ref_5683_new	44	21	35	32	22	39	30	25	26	28
CTCTCATGATGATTGT	ref_5683_new	25	26	30	26	12	13	27	33	22	11
ACTCGTACTTAAGCTG	ref_5683_new	0	0	0	0	0	0	0	0	0	0
ACACTAAAGTTCCTAT	ref_5683_new	24	22	30	24	12	21	21	18	23	23
TTTGTCCTGCGGCCTT	ref_5683_new	109	71	116	111	90	102	70	100	86	82
CCGCCGGTATTCACTC	ref_5683_new	47	20	63	55	29	50	30	58	23	39
ACCACCGGTCTAATAG	ref_5683_new	27	40	16	17	38	19	64	24	38	16
GGCTTTGCCGGGAACG	ref_5683_new	9	18	37	19	8	18	21	23	13	16
CTACAATATCTTCGCC	ref_5683_new	35	8	29	18	16	15	9	27	22	16
CAGCTCCGTCAGCTAA	ref_5683_new	32	31	32	32	49	24	31	21	35	19
CTCATCTATCGTGAGT	ref_5683_new	60	54	87	91	58	83	46	80	46	63
GCGGTCCTGTATTATA	ref_5683_new	91	76	117	103	77	87	80	78	58	111
CTGTTGACAGTTGATT	ref_5683_new	27	29	35	30	17	32	18	13	29	20
GTGACGGTACTGGCGG	ref_5683_new	56	46	96	92	29	64	41	73	48	51
ATAGCTTAGCCTACTG	ref_5683_new	11	10	19	19	6	14	8	10	6	16
GTTTCCATGCCCTGTG	ref_5683_new	54	28	50	70	33	52	49	55	37	52
ACGGGCTGGACCGCCG	ref_5683_new	0	0	0	0	0	0	0	0	0	0
AAGTCCGCTGCTCCAC	ref_5683_new	4	7	12	6	8	7	2	7	4	6
GTCTCACTATGGATGG	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TATTAGTCATAGATTA	ref_5683_new	3	1	1	1	4	3	2	4	2	2
GGGCGCGATAGCTATA	ref_5683_new	73	28	70	74	36	50	47	45	42	62
GGTGAGTGTTAGGTTT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TTATGGGGTTTTTCTT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
AGTATCCTACATAAAA	ref_5683_new	41	39	67	61	48	42	34	56	43	31
AACGGGTAATTCTTCC	ref_5683_new	3	0	9	6	1	8	2	5	3	3
TGCGTTTTTCAATGGC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TTTCCAGGCTGACTTG	ref_5683_new	41	39	51	43	33	39	44	46	31	38
AATGCATCATGCTCGA	ref_5683_new	65	37	68	48	38	60	36	55	41	44
GTCTACTATAGGTGTG	ref_5683_new	13	14	34	29	28	22	25	28	16	24
CCGGAGGCGCTGTTGT	ref_5683_new	87	56	110	113	60	91	72	80	67	90
GTCAACGGTGATCGCT	ref_5683_new	23	15	24	20	18	20	16	17	11	17
TCAACGGTGAAAGACC	ref_5683_new	18	21	25	24	16	22	19	22	9	21
TCTGTTGTTATTATGC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
CCTTTTCAGAACAACC	ref_5683_new	40	49	59	53	33	50	45	33	56	41
GTGTAACCGGGCTTGA	ref_5683_new	33	16	37	36	20	26	13	23	19	36
TGCGTAACGTAATTCC	ref_5683_new	85	35	84	55	47	72	42	41	48	65
CGTTACCTCGGGCGCC	ref_5683_new	14	13	14	9	11	12	12	16	14	9
CCCTCGGTCCGCGCAG	alt_5683_new	36	38	49	52	54	36	49	36	46	34
AAGGGTCATTTGAGAA	ref_5683_new	0	0	0	0	0	0	0	0	0	0
CGGAAAGTTATAGCAA	ref_5683_new	36	32	45	39	23	42	21	22	26	25
CGTATTGTGATCCTAT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GTACGCTTGAGGTACA	ref_5683_new	35	29	53	34	17	33	25	29	35	44
ATAATCTTCGCAAGGT	ref_5683_new	24	16	41	16	13	22	11	24	17	26
TCTAGACCGGCCAGCC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TTTCGCCGGGGGTTTA	ref_5683_new	0	0	0	0	0	0	0	0	0	0
CTTGTAATCTTACGGA	ref_5683_new	26	13	23	24	15	13	15	18	17	19
GACATCGTTTAGGTGC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GAAGCCCCTAGCTCGT	ref_5683_new	5	11	32	13	8	11	7	12	13	8
CTTAGAGAAGGTTCTA	ref_5683_new	0	0	0	0	0	0	0	0	0	0
ATTAACTTTGTCTTGC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
CTGCTTCAGGTTGGTA	ref_5683_new	226	128	248	247	147	219	140	193	160	187
CCCGCTATGCTTCTGT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GAACCTCGGGCTGCAC	ref_5683_new	54	35	91	73	33	66	50	65	39	59
TCATTGGCCCATGCGC	ref_5683_new	40	26	50	47	27	37	34	45	25	37
GTATCCTGGTCACTCT	ref_5683_new	142	95	189	155	79	153	103	143	104	125
AATGTTAAAGCCCACC	ref_5683_new	161	91	184	163	87	150	88	155	121	137
ATGTACTGTTTGCGTT	ref_5683_new	13	11	31	24	10	18	14	18	16	16
ACTCTTCATATTCAAC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
AACATCCGCACTCTTG	ref_5683_new	19	16	20	24	13	15	15	17	14	20
GCGTAGCCGAGGTAGT	ref_5683_new	0	0	0	0	0	0	0	0	0	0
TCGTTCCCTAATGATC	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GGGGCCATGAATCGAA	ref_5683_new	27	11	28	19	19	29	20	10	24	22
CCCAGCCCGGGCCTGA	ref_5683_new	0	0	0	0	0	0	0	0	0	0
GTTTGGCTTCGTTTGT	alt_2099_RC	46	51	44	44	46	56	46	39	46	43
TTCTATTCTATTTACC	alt_2099_RC	52	58	63	52	72	55	65	60	77	57
TATTTCGTCCTCTCTC	alt_2099_RC	130	106	139	101	108	101	105	105	115	102
TGCAATGTGGCACTCA	alt_2099_RC	28	24	19	33	30	29	19	17	26	18
ACAGTCAGCCTGCTCA	ref_2099_RC	55	69	67	59	103	47	87	58	89	59
AAGCTGGTTTGGTGTT	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
TTGATTCAGACTCCTG	alt_2099_RC	153	135	128	119	153	110	157	131	165	108
TAGCGTCCCGTTAAAA	alt_2099_RC	42	39	37	27	42	34	42	27	40	35
TGCACTTGACTAAAGT	alt_2099_RC	36	43	50	44	49	35	51	34	43	23
ATGGAGGTGGACCGTG	ref_2099_RC	38	37	45	40	31	29	34	27	47	33
GCGGGAATGACTTTGT	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
GGCAATTTTACTTCGC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
CTCTTAGCCTCCGCAG	alt_2099_RC	37	62	48	44	52	28	50	39	44	39
GCACGAAGGTACTGGG	alt_2099_RC	42	20	32	30	36	30	32	26	36	28
CCGTTTTTACTCATCG	alt_2099_RC	10	9	9	6	8	11	5	2	13	5
TTAAGTAGCGTTCGCA	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
AAGTCCCAGCCAAGAA	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
GGCAGGTTTGCATACG	alt_2099_RC	14	13	16	18	9	13	24	13	16	13
GCCTTATCTGTACTGC	alt_2099_RC	44	53	58	40	31	25	39	38	28	26
GCTGGTTCCATGCGTA	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
CCATGTCATGTTAAGC	alt_2099_RC	5	6	8	7	10	9	7	3	4	5
ATCAACGTACAATTAT	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
CAACTTTAGTGAAGGC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
TTAGCGGAGTAAGTTA	alt_2099_RC	41	31	38	40	43	40	46	27	53	25
CGGTTCAGCACATGCG	alt_2099_RC	73	60	84	58	55	69	79	55	84	77
CACTGCATCACTCGCG	alt_2099_RC	62	72	103	100	85	77	95	103	72	70
GCAGGCTACCTCAGCG	alt_2099_RC	97	98	112	97	109	80	96	87	87	78
CATTCATTAGCGAGTC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
ATATGGCCTTGCTCTT	alt_2099_RC	0	3	2	3	2	2	1	2	1	3
CAATCATATGTGTTGA	alt_2099_RC	66	85	85	64	116	67	95	73	73	62
CATCTAATACTCAAAA	alt_2099_RC	41	27	46	30	37	31	47	31	36	36
CTTAAATGTGACTTAA	alt_2099_RC	13	18	12	10	18	11	21	14	26	14
TGTCAGCCGGAGCGTC	alt_2099_RC	21	24	37	16	37	25	38	22	29	15
GCTTCACTCAAACGGT	alt_2099_RC	7	11	9	6	12	3	10	4	7	6
TGTGATTTTTATGTGC	alt_2099_RC	5	3	2	4	2	6	4	5	6	3
TGCCCACATCTTTGAC	alt_2099_RC	2	14	6	3	12	3	6	2	7	1
TATTGTCATCGCAGGT	alt_2099_RC	391	420	502	415	440	393	430	396	504	354
CTACCATAGTCTTCGG	alt_2099_RC	43	46	37	41	46	34	34	25	49	45
CGGAACTGAGGGAAGC	alt_2099_RC	49	59	85	57	50	49	50	59	59	54
ACTTGATATAGCTTCC	ref_2099_RC	217	218	235	177	204	191	228	178	201	182
TCCTCTACGGAGTGGT	alt_2099_RC	37	17	26	17	24	20	28	20	15	24
CGAGCTCCTTGGCTCA	alt_2099_RC	164	138	159	136	165	135	177	155	175	129
AGCCACGGCCCGAATT	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
GGCCCTGTTTATACGA	alt_2099_RC	39	32	49	44	37	51	26	34	41	37
TATTAACGCTTTGTCC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
ACGCGGCCGCTCTCCT	alt_2099_RC	16	19	25	19	21	19	26	18	29	13
GGCTAAAAGGTTCTCT	alt_2099_RC	10	1	16	7	7	2	12	16	7	8
TTTGCACTTCATCTAA	alt_2099_RC	16	46	28	20	32	33	37	30	40	21
TTTAGGCGTGACTTAA	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
CGGCCCGGCATTCCGA	alt_2099_RC	10	7	20	20	9	8	9	10	17	8
GTGATCCGGCTCGATT	alt_2099_RC	64	54	80	69	55	46	48	53	74	51
AGATAGACTGAATTTC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
CCGTACGGAAGAGTTT	alt_2099_RC	15	58	25	20	43	19	44	21	49	12
AAATGGCTTTGCTCCC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
TCCGTTCAGCTTTGAG	alt_2099_RC	44	48	76	57	59	35	40	54	58	39
GAGGCGCCGCGCTTAT	alt_2099_RC	312	347	406	373	373	328	376	320	343	324
GACATCCATTGAACCT	alt_2099_RC	14	7	20	12	14	13	13	12	25	10
CAGGTTCATGGGTATT	alt_2099_RC	5	3	8	3	2	6	4	8	5	3
ACGGACACCTGGTTTA	alt_2099_RC	32	48	37	51	51	41	37	31	43	32
TAGCTGGACGCCGCCC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
AGAATCCCTCTTCCAG	alt_2099_RC	1	2	2	1	0	1	0	1	1	1
GAGTATGGTCTCCCTT	alt_2099_RC	38	48	60	43	43	53	58	45	47	41
CCAGTGTCCTTCGGAG	alt_2099_RC	36	44	57	27	39	27	48	41	43	25
ACATGATATAGCTTCC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
CTGTTTATACAGGAGG	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
GAACTTGTTTCCTGTA	alt_2099_RC	35	44	41	30	41	33	49	27	49	41
TTGTCTTCTCCTGTAT	alt_2099_RC	9	2	7	7	4	6	3	7	6	6
TTGAGTTGTGGAGGCC	alt_2099_RC	13	28	25	17	23	22	27	17	17	17
CAGAGCTCACTATAGA	alt_2099_RC	27	20	35	25	41	20	34	22	36	24
AGTGCTGTTACCTGTA	alt_2099_RC	21	38	36	22	35	35	30	31	42	21
TCCGGTTGAGAATGTA	alt_2099_RC	0	0	0	0	1	4	3	1	0	0
CTCTGAACTATATTAC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
AATAACCCTCAGACAA	alt_2099_RC	9	17	24	21	7	27	13	11	15	20
AACCAGATGTATTTTC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
TCCATCTGTATTATTA	alt_2099_RC	30	27	40	32	28	19	25	27	24	30
AACCTTCACCCTTTCC	alt_2099_RC	153	196	203	172	204	157	197	171	197	134
TCGCACGTCCGACTGT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
AAATTACGACTTTAGC	alt_2099_RC	12	9	15	11	8	15	6	7	9	4
CGTTAACTGACAGACG	ref_2099_RC	59	39	64	60	41	58	60	51	76	52
GACATTGGCGTCGCCA	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
TATGCCATCATTCGGT	alt_2099_RC	56	57	54	45	69	48	83	47	69	48
ATCTTATGACGAGGGA	alt_2099_RC	8	7	17	5	4	6	2	1	5	6
GAAGTAGGGTCATGTC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
TGTCACCCCTGATAAT	alt_2099_RC	17	11	18	28	17	15	32	28	25	14
GATCAACGTACGGGGT	alt_2099_RC	25	13	18	20	8	12	13	19	17	13
GTTTTACAGTCTCGTG	alt_2099_RC	100	99	109	99	104	90	102	85	104	77
AGATTATGTTAAGATC	alt_2099_RC	34	56	71	47	49	45	39	19	60	38
GGGCAGACGTGGAATA	ref_2099_RC	99	70	111	81	84	79	103	96	92	70
TGGGATTGCGTAATGC	alt_2099_RC	3	1	3	3	6	6	4	3	5	2
TCATTCCGTTGGTCAT	alt_2099_RC	44	35	59	44	49	44	43	44	33	34
GGAATCTATCTATGAT	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
ATAGTACGGTTCGTAA	alt_2099_RC	12	13	13	5	6	8	9	16	4	8
CATTGCACATTGCGGC	alt_2099_RC	43	43	40	39	38	36	46	37	30	34
GTGGCATCTCATATCT	alt_2099_RC	10	9	14	5	10	6	5	6	7	7
CGTTGGGTATCACGCC	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
CAAGAACATACCTTCT	alt_2099_RC	0	0	0	0	0	0	0	0	0	0
TCATTTGGCGTAAATT	alt_2099_RC	8	16	13	16	11	12	8	17	8	12
TACTTTTTGGTTTGCG	alt_2099_RC	75	65	77	49	65	44	74	69	82	66
TGTCCACCAGGGTATC	alt_2099_RC	25	30	26	26	41	21	42	16	35	22
AAAATGGCCTCCTTCA	alt_2099_RC	18	18	21	14	10	19	13	17	19	9
TCCCCTGGAGCTTTGG	alt_2099_RC	56	55	65	51	57	37	62	41	63	44
CTTTAAGTAGCACTAT	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TGTTAAACGTGCACAC	ref_6066_new	3	7	8	4	3	1	5	3	1	0
TTTGTGTAGCCGTTTT	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TGTCTAGGACGTCACA	ref_6066_new	0	0	0	0	0	0	0	0	0	0
CCTATCTGTTAGCGGG	ref_6066_new	18	38	22	22	53	17	58	26	63	22
CGCACTTCACCTACAG	ref_6066_new	3	9	6	3	6	3	12	5	5	4
CTTCCGTCCCTTGCAT	ref_6066_new	5	15	13	9	7	8	22	7	17	6
CAACTCCATCATAACT	ref_6066_new	1	4	2	8	6	5	5	4	8	2
ATCATATGCTACAGTT	ref_6066_new	71	90	81	72	91	64	140	63	112	54
CGAATCGGTCCGTTGG	ref_6066_new	41	60	34	32	67	33	50	34	61	29
CTCGTTATTCAAGGTA	ref_6066_new	105	186	139	133	190	116	196	104	216	109
CCGAGTTTTGACTCGC	ref_6066_new	14	38	31	19	27	23	31	16	27	14
CGCAGTTCTCTCTCCT	ref_6066_new	1	5	2	2	3	5	6	3	6	3
TTGAGCTTTAAGCGTG	ref_6066_new	0	0	0	0	0	0	0	0	0	0
GGTCTTTTTTACATCC	ref_6066_new	7	4	4	0	4	7	5	2	3	1
CCTTACGGGTTGCTTT	ref_6066_new	6	12	6	4	11	10	24	6	11	5
ATGTCTCCTTCCTGCT	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TCTTCCCATCGCTGCT	ref_6066_new	3	3	3	9	6	4	5	6	14	6
GCAACCTATATAAGGT	ref_6066_new	25	44	22	28	38	23	49	16	51	24
CTTTTTAGTTGCGTGG	ref_6066_new	0	0	0	0	0	0	0	0	0	0
CTCGTCGAGCCCGGTG	ref_6066_new	0	0	0	0	0	0	0	0	0	0
GGATCGTTTAACACCA	ref_6066_new	8	19	10	11	24	10	24	15	17	11
TGCTTGGCTTCAACAA	ref_6066_new	69	89	65	67	78	61	82	64	103	47
ACGGTTGGTCTAAGTT	ref_6066_new	17	38	35	28	27	18	31	19	33	16
CTATGCAGTGCAAAAT	ref_6066_new	4	9	1	4	4	4	6	2	7	0
ACAGATTCTTTGGAAA	ref_6066_new	20	36	23	19	38	21	29	26	59	16
CATCGTCAACAGGTTT	ref_6066_new	49	55	48	40	45	47	67	29	69	29
GATTACACTTTTCGAA	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TGGTACTGAGTAATAC	ref_6066_new	17	40	29	18	43	19	41	17	36	27
AACTTCTACTTTCGAT	ref_6066_new	29	53	33	48	69	19	47	28	43	13
GTTTTTTTATCTTCAT	ref_6066_new	0	0	0	0	0	0	0	0	0	0
CCTATCTCACTTAGCT	ref_6066_new	0	0	0	0	0	0	0	0	0	0
GTACCTCCGTCACCCG	ref_6066_new	3	3	0	1	10	4	8	1	3	0
GACAGGATCTTGATGC	ref_6066_new	11	15	9	14	10	7	17	4	22	12
TTGTGTTCCGTGTACT	ref_6066_new	5	6	5	5	9	4	10	2	5	2
GCACTTCTGTATGAGA	ref_6066_new	0	0	0	0	0	0	0	0	0	0
CAGTTCTGGACTGTAT	ref_6066_new	13	27	13	16	11	14	18	10	20	11
GTTATGTTGAGCACTC	ref_6066_new	40	47	41	33	51	33	56	34	78	32
TTTGACTGGTTCCTAG	ref_6066_new	35	54	37	31	47	25	45	18	79	40
GTTAAGGTATTTAGGC	ref_6066_new	10	21	19	12	27	17	28	20	18	23
TCATCTTGGATCCGTG	ref_6066_new	10	8	7	5	10	6	10	4	7	8
TCCTTTAGCCCGCGGG	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TGTCCTTAAATGTCAG	ref_6066_new	0	1	1	1	1	2	0	1	2	3
CGGCTTCCTTGGGTGC	ref_6066_new	30	54	41	34	45	40	40	29	55	28
CATGACATGGTAATTA	ref_6066_new	1	12	1	5	6	0	2	1	7	4
GAATCTTATCCGCTCC	ref_6066_new	0	0	0	0	0	0	0	0	0	0
ATGCGCTTAGGCGTGG	ref_6066_new	78	111	66	51	95	49	85	54	103	42
ACGTCAAGCCCTTTTA	ref_6066_new	20	35	17	20	21	10	29	19	34	8
GGTCAACTTTCGGGCC	ref_6066_new	5	21	12	6	38	8	39	3	39	5
TCGGTAGTCCCCCACT	ref_6066_new	23	69	45	47	67	34	64	32	74	42
ACTGGAATTCTGGGTC	ref_6066_new	37	76	49	36	53	46	62	34	98	34
TGATTTATATACCTGT	ref_6066_new	14	39	22	20	40	16	27	10	44	10
AAGTCGTTCTGGTCAA	ref_6066_new	42	48	45	25	61	39	82	37	79	27
CTCTTTGGAGGTAGAA	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TGCAAGCATCTGTTAG	ref_6066_new	0	0	0	0	0	0	0	0	0	0
CCTGACATAGATATTG	ref_6066_new	0	0	0	0	0	0	0	0	0	0
ATGAGCTTTAAGCGTG	ref_6066_new	337	526	431	377	537	335	544	348	547	291
TTCAATTGCGTATTGA	ref_6066_new	28	46	34	28	48	17	44	27	56	28
CTTTCTGCGACTCCGG	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TACTCCCGGGCGTTCC	ref_6066_new	8	38	17	11	39	10	41	5	58	10
GGTCCATGGTGTTATC	ref_6066_new	23	40	17	17	45	15	43	18	53	23
TGCTCTGCATACTTTC	ref_6066_new	12	30	15	21	21	14	24	19	35	13
ATAAAGATGCCAATTT	ref_6066_new	0	0	0	0	0	0	0	0	0	0
GGCGCGATATTAATCG	ref_6066_new	4	12	12	11	14	8	16	6	14	12
CGTTGTGCGGGATTTG	ref_6066_new	10	12	4	4	13	7	11	8	13	4
TCTTTTAGCCTGGTAC	ref_6066_new	0	0	0	0	0	0	0	0	0	0
TGATTATTGCCTAGAA	ref_6066_new	27	42	33	28	53	27	50	25	49	26
GGTCAAGACTCATGCC	ref_6066_new	8	35	7	18	35	12	35	9	38	8
AAAGTTACGTCCTGTC	ref_6066_new	0	0	0	0	0	0	0	0	0	0
CGGAAAATCATTCCTT	ref_6066_new	25	61	41	41	33	28	36	21	40	21
CATCAGGTAGTCTCAG	ref_5995_new	20	32	15	14	50	19	59	14	58	22
GGACTGGGTACTCCAT	ref_5995_new	17	26	15	13	33	12	47	17	56	16
CTAGGCTAGCATCGCT	ref_5995_new	48	153	78	73	159	55	172	69	180	61
TAGTACAACCTATGCC	ref_5995_new	9	37	7	13	43	5	29	8	31	1
CATTACCCATAGCAGG	ref_5995_new	16	47	12	20	51	23	43	13	39	21
TCTAATGCCCCCGATG	ref_5995_new	0	0	0	0	0	0	0	0	0	0
ACTTGCCGACATTTTT	ref_5995_new	40	76	69	51	86	78	100	62	95	52
TTACCCCTGTGGGCTT	ref_5995_new	47	118	58	51	127	44	135	54	122	48
GTCCGATCAATTGTAA	ref_5995_new	23	47	21	24	54	29	40	17	42	23
CCTCTACTTTCTCCGC	ref_5995_new	9	31	11	15	22	10	22	4	21	7
AGTGTTGTAATCGTGC	ref_5995_new	37	125	70	37	123	55	117	50	115	41
CCGCTTGTCCATGTGA	ref_5995_new	4	15	4	7	19	4	16	3	18	4
AAGGCCCCGCCTCCAA	ref_5995_new	49	98	61	48	68	46	105	37	115	46
CATGGCTCGTATCGCG	ref_5995_new	14	33	14	12	17	10	20	7	29	8
CCTCTGTGAACAATTT	ref_5995_new	16	58	14	14	49	15	65	11	63	8
TCATCGTGCACATCTC	ref_5995_new	0	0	0	0	0	0	0	0	0	0
ATAGGCGGGTCATCTT	ref_5995_new	8	10	1	1	9	2	6	2	6	6
GGTTATTTGTCAGGCG	ref_5995_new	11	28	20	10	32	13	36	18	43	13
TTTGATGAACGATACG	ref_5995_new	10	28	11	6	16	13	29	9	15	7
GGTTCCACAATACGGA	ref_5995_new	12	13	20	11	13	13	9	16	7	16
ATGCTGCGTAACTGCT	ref_5995_new	48	126	44	44	113	60	85	37	112	62
GCCGTTTACACGACAA	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GCATGGATCTTTCAAA	ref_5995_new	0	0	0	0	0	0	0	0	0	0
AAGCAATCTTCACTTC	alt_5995_new	16	20	24	10	30	11	29	14	24	10
AAATAGTAATATTCTT	ref_5995_new	0	0	1	0	0	0	0	0	0	0
TTTCAATTGAATCTAT	ref_5995_new	15	36	16	16	36	12	42	7	46	11
ATGGCACACTGTAGAT	ref_5995_new	19	50	29	24	49	28	58	16	38	18
ATACTGTCAAACAACG	ref_5995_new	39	126	72	57	138	53	118	56	128	55
CCTGTTATCTACATAG	ref_5995_new	8	39	9	4	39	16	44	6	36	14
TATCATTGAGCATTTT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GTATCCAATGGGAGCT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
TTTTGACTCCTACTGT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
TCGGCCTCCTCCGGTT	ref_5995_new	21	28	15	16	39	14	32	11	30	19
GGAAAATCCTGTCATT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GTAGTCCTCAACCTCA	ref_5995_new	2	1	5	2	7	0	5	4	9	1
CTTTCTTTTTCAGGAA	ref_5995_new	8	8	9	12	23	6	29	11	20	12
CCCCATGTCCGAAACC	ref_5995_new	0	0	0	0	0	0	0	0	0	0
CGAACTGACAATACTG	ref_5995_new	25	87	36	25	93	36	97	33	115	22
AGCCCCTCTAGAACAG	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GCCTACGGATGCATGT	ref_5995_new	13	30	19	15	20	15	39	12	48	14
AATTACCTGTATGGAA	ref_5995_new	20	56	43	22	70	18	59	21	72	19
GCTTTCTAAAACGGCG	ref_5995_new	27	74	55	38	104	43	102	46	87	38
GTATATCTAGGTTTTT	ref_5995_new	4	8	4	1	15	1	9	6	10	2
TTGTACCCGCTCTTAC	ref_5995_new	36	57	29	23	40	23	63	28	65	29
GTGGTTTACCCTTTTT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GTTGCGGACACTGTGC	ref_5995_new	65	125	53	53	139	45	106	60	128	54
GTGTAGCGAGTAATAC	ref_5995_new	5	10	1	11	14	0	2	7	18	2
TTCCCTGGTACATTCA	ref_5995_new	16	56	29	25	48	18	52	23	54	20
TAGTGGATTAGCAGGC	ref_5995_new	9	17	8	9	25	8	18	5	13	6
CGAGTTTCAGTGTGAA	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GTCATCCGGAGACTTC	ref_5995_new	31	75	31	28	48	29	72	20	72	32
AGCGGTGAGGCTTGAT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GTTTCAGTGGCTTTTC	ref_5995_new	5	1	2	1	3	4	3	2	7	3
CCTCAGCGATATTTGA	ref_5995_new	5	1	2	0	3	1	6	3	6	2
TCCTTTTTGAGAATGA	ref_5995_new	14	43	19	17	46	24	32	13	36	15
GGGTAAGCGTCAGATG	ref_5995_new	7	21	15	8	33	16	28	4	30	17
CATGTTAAACCACGCT	ref_5995_new	4	2	0	1	4	1	3	0	0	5
ATTGGTACTTGGCATT	ref_5995_new	13	82	32	33	73	31	75	36	76	20
TATTGAGATCCAACGT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
AAATCCAGGGGGTCAC	ref_5995_new	0	0	0	0	0	0	0	0	0	0
TACTTGCGTATCTTAC	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GTGGCCTATGTGTTCT	ref_5995_new	25	51	35	23	53	22	66	10	82	28
GCGACTTCAAATTACA	ref_5995_new	111	204	136	101	245	111	216	106	217	97
CTCTGTATCTCGGCCA	ref_5995_new	8	24	13	14	33	7	33	14	38	15
GGCCTTACTTGCAGCC	ref_5995_new	11	20	14	8	26	8	32	18	28	8
CCAGTTTCCTTTCCGG	alt_5995_new	15	60	35	25	66	30	88	24	65	30
TAAATTACGTTTAAAT	ref_5995_new	14	39	32	19	52	36	54	25	44	25
TTTAACATTTTACGAA	ref_5995_new	3	6	5	5	8	5	7	5	7	2
CACTCGGCCCCTAAAG	ref_5995_new	0	0	0	0	0	0	0	0	0	0
TCTCTTCCCTAGCTGA	alt_5995_new	27	70	27	38	98	33	80	26	79	31
TTGTGGCCTTCATTAT	ref_5995_new	2	7	6	6	9	2	6	2	7	3
ATAAACGGTTTTTGGA	ref_5995_new	2	11	3	4	9	6	8	4	6	3
GTAACGATTTTTTAGA	ref_5995_new	11	18	3	8	10	7	27	4	22	3
GTGGGATCTATTGCTA	ref_5995_new	0	0	0	0	0	0	0	0	0	0
CACCCAACCTAGTATT	ref_5995_new	15	43	16	13	31	20	46	17	30	6
TTTTGTTTGGCTAGAT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
GCGATTTTCTGGGATT	ref_5995_new	9	43	13	19	43	14	57	17	28	15
TCCGATACGATGCGTC	ref_5995_new	5	19	5	5	19	4	29	3	32	3
CTGTGTTGCTCGGCGT	ref_5995_new	0	0	0	0	0	0	0	0	0	0
TTCGTGTCGAGAACAG	alt_5995_new	27	87	46	21	86	28	77	27	82	29
CCTAGGGTGTCTCTCC	ref_5995_new	23	52	20	25	49	19	49	22	53	14
AGAGGAGTTGATTGCT	ref_5995_new	4	19	13	13	19	11	27	13	25	9
TGTCGTTGTTACGGTG	ref_5995_new	47	119	54	60	126	37	117	67	144	47
TTATTAACTTCCTTCG	ref_5995_new	5	2	4	0	1	2	0	3	8	5
GTAACATAATGCTTTA	ref_5995_new	26	54	18	18	50	15	57	21	57	29
TTAGAGTGCCTTGTTG	ref_5995_new	6	5	3	2	16	4	14	3	12	0
AATTGTGATAAGCAGT	ref_5995_new	5	4	0	2	2	3	0	3	0	0
TCAGGTTCATCGGACT	ref_5995_new	24	66	34	29	77	28	64	47	77	25
AAAGTCCATAGGATTA	ref_5995_new	0	0	0	0	0	0	0	0	0	0
TGTACCGTTAGTGACC	ref_5995_new	25	47	24	10	34	22	35	18	64	17
CCCCCCGCCTGGCCCC	ref_5995_new	8	43	23	4	44	6	40	5	33	10
TTCTGTTGTACGCTTA	alt_5392_reverse	248	158	297	227	175	242	191	228	197	208
TTCCTGGGTTGCGTGA	alt_5392_reverse	79	58	99	89	55	72	50	88	43	55
AACAGATACGTAGGTA	alt_5392_reverse	12	12	16	12	8	22	14	16	13	12
ACTACTACAATCATTG	alt_5392_reverse	44	31	42	44	19	36	33	45	32	43
AAGGTGGATGACAAAT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGGAATTCTGGGT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
TATGGAGGATACTTAG	alt_5392_reverse	33	17	47	61	32	44	23	33	27	29
GCGTAGCTAGCTCGAC	alt_5392_reverse	85	42	99	87	65	81	82	78	66	64
CATAGGAAGAAAGGGA	alt_5392_reverse	44	29	60	68	36	51	41	41	39	41
CGTGTTAGTGTTGAGT	alt_5392_reverse	57	34	49	59	41	49	35	41	41	33
CTGAGGCAAAATCTGG	alt_5392_reverse	17	13	40	21	13	21	15	17	18	35
GGCACCCTTCGTACTC	alt_5392_reverse	19	6	16	28	9	17	2	19	16	14
CTGCCGTTAACATGTA	alt_5392_reverse	52	34	62	47	36	36	28	53	24	32
TCTCTCTTTACAGGAC	alt_5392_reverse	177	131	236	211	149	162	107	170	144	182
ATGCTTGGGAGAACAC	alt_5392_reverse	18	8	26	16	10	15	14	16	7	7
AATTTCTGTTTCTCTA	alt_5392_reverse	147	61	195	142	60	142	86	129	81	124
GGTAGGCGTTTTTTAT	alt_5392_reverse	14	16	15	11	16	16	8	16	10	17
ATGCAGGCTCTAAGAC	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
CGGTAAACCTTTTCTT	alt_5392_reverse	102	44	106	72	52	84	60	72	56	67
TAAAATTGCTTAAATT	alt_5392_reverse	74	47	97	81	37	70	56	91	46	72
CCCTTTGTATACCTTA	alt_5392_reverse	42	31	59	48	30	25	32	39	37	45
TGCTACTCACGCCGTT	alt_5392_reverse	57	52	57	71	56	69	57	48	61	47
GTGGCTATATGCAGGC	alt_5392_reverse	63	50	76	64	58	52	54	59	48	41
TTCAAGAGATCCCAGT	alt_5392_reverse	343	197	427	363	240	332	224	382	214	286
TTCAGACGATTCCGTT	alt_5392_reverse	26	15	19	25	15	13	20	11	12	12
GTGGTATTTTCTTTTC	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
GCCAAGACAGATCTTA	alt_5392_reverse	535	314	530	522	321	475	359	417	344	435
CTTGAATCCCTCCAAA	alt_5392_reverse	157	93	200	155	93	155	87	167	111	143
CTCATTTCTTACGTAG	alt_5392_reverse	101	72	141	139	51	108	87	90	80	77
ATGCTTTATTCACATC	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
GAAGGATCAAGAGATG	alt_5392_reverse	31	7	40	26	16	20	20	34	15	17
AGTGTTCGCGGTCGTG	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
GGATTCTCTAGGGTTT	alt_5392_reverse	90	52	85	67	49	73	66	68	54	58
AGAATGCTTGACTATA	alt_5392_reverse	34	24	51	50	36	31	24	45	29	40
GGTTTATCATACGGAG	alt_5392_reverse	15	17	26	19	22	14	16	19	18	12
TTCACTGTTTGTTCAG	alt_5392_reverse	92	72	109	100	75	81	77	95	82	73
GTCCAATATCAGTGTG	alt_5392_reverse	30	14	29	35	15	23	27	23	15	17
GACCCTCATTACAGTT	alt_5392_reverse	14	13	21	23	20	23	21	24	9	17
TGTCAGCGACGTCCTG	alt_5392_reverse	185	148	257	204	154	181	157	201	122	217
CGATAGTTACTAAGCC	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
ACAAAGTTATCTTCAC	alt_5392_reverse	347	198	403	387	182	339	223	316	198	292
TATATGTCCGATTCCG	alt_5392_reverse	51	35	46	46	44	47	41	46	33	47
TGTGTCGTGGGGCTTA	alt_5392_reverse	26	21	17	19	13	20	12	24	19	13
ACCTAGCGGTAGTCCT	alt_5392_reverse	21	12	41	35	25	30	19	34	29	21
TAGGTCTGTTCAGTAC	ref_5392_reverse	157	128	174	171	146	157	108	145	128	130
TTGCTTCTCAGAGGGC	alt_5392_reverse	55	14	60	49	27	59	27	51	30	39
GACAAATTCTAGTTAC	alt_5392_reverse	11	12	21	19	8	16	9	11	7	15
CTCAGTTGTGCTTGAT	alt_5392_reverse	26	11	25	21	11	21	10	16	10	19
AATTCTGGGCATCAGT	alt_5392_reverse	86	68	130	108	75	98	70	97	68	84
CTAGCAAGCTCGCTCT	alt_5392_reverse	253	228	284	272	213	241	220	254	196	231
TTTGCGACATGCATCT	alt_5392_reverse	212	99	259	241	122	200	122	210	119	199
TATCTAGAAAGCGCTT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCCCCTCTTTCT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTGGATCCGTTGA	alt_5392_reverse	36	18	30	25	23	21	23	32	21	24
AGAAGTCGCGAGCTTC	alt_5392_reverse	4	3	3	7	5	9	5	3	4	6
GTTAAGAACCCACATC	alt_5392_reverse	219	147	227	221	149	203	146	181	142	163
AGATCGCAAGGTTGTA	alt_5392_reverse	8	1	9	3	4	2	2	3	9	8
GCGGGCGACACCTATA	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
CATCTTGGTACATGCC	alt_5392_reverse	85	65	129	122	71	104	78	99	67	89
CCCGACACCGGTTTCC	alt_5392_reverse	144	88	167	134	121	112	118	113	102	108
TCATCCTCCTTCCAAT	alt_5392_reverse	4	6	7	3	2	2	4	3	1	3
CATACGTATAGCTAGA	alt_5392_reverse	46	28	54	47	20	33	20	32	49	38
GTGCTTGTATCTGACC	alt_5392_reverse	15	7	21	10	4	14	14	12	13	10
AGCCACGTATGGCTTT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
TTTACCCCAACCTTCA	alt_5392_reverse	124	120	183	154	100	145	126	123	101	116
GTGTTGGGGCTTTTTC	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGGCTGTCCCACC	alt_5392_reverse	62	37	94	78	35	78	35	63	42	63
ATTCACCTAGGCTGTC	alt_5392_reverse	53	29	52	45	30	33	28	39	31	29
TCTGTTACGAAATACA	alt_5392_reverse	27	13	24	21	20	31	23	19	17	21
GTCCGGCTATTCGAAC	alt_5392_reverse	96	80	117	101	67	85	76	86	78	72
TTGCAGGTTGTGTTTT	alt_5392_reverse	26	9	23	17	6	20	15	23	20	15
CTTACCACGGGGTCGT	alt_5392_reverse	134	98	146	145	107	111	82	105	128	107
AACGTTCCTCCTTGTC	alt_5392_reverse	14	11	24	13	16	13	19	20	26	16
TTAGGTCGCGGACGAC	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
CGAATTTCGCCGTGTT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
ACTATACTCAGGTTAG	alt_5392_reverse	154	99	163	164	94	158	116	171	134	124
TTGAGCGTTACCTAGT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
ATTTATGGGGGTCCGA	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
TCAACTCAACCGTATC	alt_5392_reverse	40	52	52	55	39	48	45	49	44	45
ATCTAGAACATACGCA	alt_5392_reverse	26	41	37	36	42	41	51	38	71	25
TGGTCCTACCCAGATA	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTCAGTAAAGTAT	alt_5392_reverse	69	47	96	84	65	90	64	69	63	80
ATATTCAGGCTTACCC	alt_5392_reverse	3	2	5	5	2	2	5	3	5	2
TCTGTCGCAGGTATAA	alt_5392_reverse	50	35	67	69	55	61	35	45	56	47
GCTGTCCTCGCTCGCC	alt_5392_reverse	31	10	36	39	20	28	17	35	20	31
ATTTCCCACCTAAAGG	ref_5392_reverse	50	32	48	41	28	51	16	37	30	28
CGACCGGGCCGGACTC	alt_5392_reverse	59	38	58	39	32	46	44	59	30	61
TTATTGTAGGATGTTT	alt_5392_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTTGTTGTGAGTC	alt_5392_reverse	343	241	406	391	234	342	226	346	245	297
TGAGAGGATTTCTGAG	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTACCCCACTGAA	alt_4684_fdr	49	73	68	66	56	48	60	36	69	37
GCCTGGCGCGCTATGG	alt_4684_fdr	16	8	6	9	8	5	13	4	12	5
CTAGGTCCTGAGGGCC	alt_4684_fdr	16	21	14	19	23	10	15	13	23	17
TTACCAAGGCATTTTT	alt_4684_fdr	32	37	58	51	54	28	51	38	62	31
TAGGTGGCCCCCGATT	alt_4684_fdr	32	46	43	30	56	42	48	33	46	43
ATGAACTCTCGTCATT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGTTCACACTTCT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGCACGTAGTGAG	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGTGTTACCACAT	alt_4684_fdr	17	8	14	11	10	7	19	15	14	6
TCGGAGGTGACCTTAT	alt_4684_fdr	19	15	17	18	24	15	24	11	19	16
ATTCTTTTTAGATCGA	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGCTGTCGCGGCT	alt_4684_fdr	163	187	168	165	174	154	156	152	162	127
CCCAGTGGCTCACACC	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCAATGCAGTTTC	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTCCGTATTACC	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCTACGTTAGAAT	alt_4684_fdr	26	33	43	37	19	18	35	18	31	28
TGGTTCCACATCACTC	alt_4684_fdr	102	121	127	122	160	112	129	99	153	96
TGAGATCCCTCTTCTC	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GTATGATTTTAACGTC	ref_4684_fdr	67	48	96	70	45	65	41	89	51	45
CCTCCGGAGGCCCAAT	alt_4684_fdr	82	87	85	86	90	61	95	72	92	70
ATCTACTTTATTCCTG	alt_4684_fdr	2	5	5	5	6	2	7	5	6	7
TCAAGGACCCCGCCAT	alt_4684_fdr	18	11	19	14	30	14	21	14	26	12
TCACGGATACCTCACC	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GAATTGGGGGCTTGTA	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTAACTATCAAT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TATCTATATCGAGATA	alt_4684_fdr	18	27	25	31	32	26	33	33	33	19
TTAGTGCTGCTTTTCC	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTCTTGTTCAAAC	alt_4684_fdr	31	43	41	27	40	34	40	24	52	26
GCTCAACTACTGGAGC	alt_4684_fdr	10	17	12	9	11	5	12	10	11	5
TTGTTACTTTTCCTCA	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTGCATTCGGAA	alt_4684_fdr	29	42	18	19	36	25	43	20	45	28
TCATTAGTTTAGTTTC	alt_4684_fdr	15	21	18	14	18	10	26	12	22	9
TGCCCTAAGACTGCCT	alt_4684_fdr	100	149	128	100	118	112	158	125	150	90
ATCCTACAGCTTTAGA	alt_4684_fdr	10	25	12	9	23	11	9	8	9	11
TCGGCGCGAGGTGCAA	alt_4684_fdr	2	3	3	3	4	6	8	4	7	7
GACCATGTGGGCATCT	alt_4684_fdr	27	37	48	17	36	32	37	21	42	33
GTTATGGGCTGGGGTA	alt_4684_fdr	19	15	14	12	14	13	27	7	14	12
TACTTCACCTAGTAAC	alt_4684_fdr	7	12	9	11	14	2	9	9	9	3
CAGTGCTTCTTACTTT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GCGCATAAGTAATTCG	alt_4684_fdr	10	20	24	12	20	17	19	19	35	10
AGTTTAAATAGGCGCG	alt_4684_fdr	34	45	34	43	51	29	38	28	56	22
AGCATCCCGTCTGTGT	alt_4684_fdr	17	33	16	12	18	17	23	25	30	13
TACTTTAGTTGAATCC	alt_4684_fdr	35	42	39	31	32	28	38	33	38	29
ATTGAAGTTACTGTCT	alt_4684_fdr	7	17	7	13	12	8	17	10	15	6
CCCCTGCTAGTTGAAT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATTGATCAGTTTGAAC	alt_4684_fdr	10	19	6	7	16	10	24	9	15	5
GTGATCTAACCCTCGG	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TACTTTAATGGTTGAG	alt_4684_fdr	28	50	45	39	34	27	57	30	46	21
GCATCGGTAGGGTTGC	alt_4684_fdr	14	14	16	8	8	10	8	14	13	9
CCGAATGACGCGGGGT	alt_4684_fdr	46	51	38	46	61	36	63	56	55	40
TTACCCAATGAACAGG	alt_4684_fdr	4	6	5	6	10	3	9	7	6	3
GAGACATTAGTTCTAC	alt_4684_fdr	13	18	13	7	20	10	14	13	16	7
GTTGATCCCATATTCC	alt_4684_fdr	32	32	39	35	51	27	48	15	35	31
GGTATTGGGTCACTCA	alt_4684_fdr	14	11	13	10	13	15	9	10	19	12
GGTTGGTCGCCTTGGC	alt_4684_fdr	2	18	10	9	12	7	19	8	11	3
CCTTTTGATTACCAAC	alt_4684_fdr	1	4	2	2	3	0	5	1	2	0
CGTTTCTCTTCTTGGA	alt_4684_fdr	66	57	59	56	68	54	80	55	66	49
GCCACGGCTGTAATCC	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TCATAACTCCATTCTT	alt_4684_fdr	12	24	10	18	28	9	17	15	11	8
GCTCATACCACTTTCA	alt_4684_fdr	14	20	11	9	16	9	15	7	15	12
TGGTTAAAGGAATGCG	alt_4684_fdr	16	18	13	11	7	19	13	5	20	4
TCGGACCGGCTTTTCG	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
AATTACCAATTATATT	ref_4684_fdr	154	186	155	158	194	151	182	129	191	97
CGTATATCCATGGAAT	alt_4684_fdr	24	26	21	16	27	18	44	22	36	14
GAGCGTATAACTTTGT	alt_4684_fdr	40	52	32	33	40	23	52	42	54	29
AGCGAGGTCTCCTTTT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGGCATTTAATC	alt_4684_fdr	11	14	15	15	10	12	12	15	9	15
TTCATTCAAGTAGCAA	alt_4684_fdr	40	53	60	47	49	33	60	45	55	26
CACATGTCGAAGGAAC	alt_4684_fdr	60	100	80	57	76	49	117	48	97	53
TCCGGATATACGAACT	alt_4684_fdr	57	72	70	52	66	42	49	39	70	42
AAGCGGGCATAGGGAG	alt_4684_fdr	32	37	40	26	51	24	44	35	38	37
ACGCACAGGGGCTATT	alt_4684_fdr	16	26	19	15	23	15	21	11	21	22
CCAATGTTATACACAG	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GCACCGATTTCGTCGC	alt_4684_fdr	15	12	14	10	19	22	13	14	24	10
CTCATAAAATGGGGCT	alt_4684_fdr	7	4	10	9	10	5	11	6	11	2
AGGACAGAACCGCTCT	ref_4684_fdr	50	82	60	76	80	47	78	60	82	60
TAGTAAGGGCTGTCCT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GACTACGTACGTCATC	alt_4684_fdr	108	124	125	92	140	113	146	122	167	90
TCTCTCAGGCACTAGC	ref_4684_fdr	103	129	95	107	126	85	151	90	147	99
GACACCGTCTATAGAA	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCGAGGTCGTTTT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATATAGATATTCGGTT	alt_4684_fdr	20	29	22	15	36	15	29	12	28	14
GGTTTCACGCATTGTT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GGTCAGGGGTACATAG	alt_4684_fdr	41	72	49	38	55	58	69	48	59	44
TGCGATTATCCCGGGG	alt_4684_fdr	1	2	1	2	2	2	3	3	3	2
TAGAAAAATTTAGCTG	alt_4684_fdr	4	4	6	12	7	3	11	2	4	3
ATATACTTTACTTTAT	alt_4684_fdr	73	101	79	85	92	64	99	70	105	51
GAATTCGCTAAACTCA	alt_4684_fdr	16	23	14	14	18	13	22	20	16	13
CTCGAATTTAGCATTT	alt_4684_fdr	12	15	14	19	18	15	29	14	19	17
GTTATTCGACACACCT	alt_4684_fdr	9	18	15	14	13	8	10	9	11	7
TAATGTAAGTTTGGCG	alt_4684_fdr	7	10	12	5	6	6	16	6	5	6
TTTGGGTGATTCGTAC	alt_4684_fdr	12	20	24	14	22	9	15	15	17	11
TTCTTTTGCTATCCCA	alt_4684_fdr	5	1	4	7	7	5	4	5	4	2
GGAGTCCCTCCTGTCG	alt_4684_fdr	26	37	27	22	25	19	30	24	37	24
TTCCTATCTACTTGCA	alt_4684_fdr	13	19	18	14	28	16	18	22	27	14
ATCGTAGCGCGCGGCG	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCTAGCTATGTAT	alt_4684_fdr	15	19	20	16	17	12	16	12	23	12
AGATATTAATTGGCCA	alt_4684_fdr	8	14	6	9	11	9	11	4	5	5
TAAGGTTCTCGTTTTC	alt_4684_fdr	74	93	104	83	98	77	83	66	93	65
CCGTCCGACTAAAATC	alt_4684_fdr	27	61	29	41	64	44	48	48	64	38
GCCCCGTTTTATGATG	alt_4684_fdr	13	7	8	6	10	6	14	4	14	8
GCAATCTACGGATATT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGGTAAAGCGAAA	alt_4684_fdr	24	36	42	26	72	40	49	38	50	48
GTGTCTATTAAGACGT	alt_4684_fdr	23	22	24	23	27	16	33	24	37	18
GGTTGACAGTGAGGCA	alt_4684_fdr	83	133	121	104	145	103	166	102	175	65
ATCGGTCTTTTCGCCT	alt_4684_fdr	42	109	76	63	76	53	83	40	118	43
CGACGTACGGGCTCTC	alt_4684_fdr	14	9	12	11	13	11	7	3	9	14
TCTCGAGAGCAGATTT	alt_4684_fdr	15	17	19	20	8	15	10	14	14	19
CGCAGGCTGTAGTCAA	alt_4684_fdr	6	4	13	16	14	7	24	5	15	10
ATCCCGCTGGTGTTTT	alt_4684_fdr	2	20	10	5	12	7	12	3	10	1
TAACCGGTTGATCTTA	alt_4684_fdr	28	41	18	12	19	17	43	14	29	19
GATTATTCCTCTATAT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TCGACGTGGTGAAATT	alt_4684_fdr	11	21	15	13	23	16	7	13	7	11
TTCGTCCTATCATTCT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
GTATGTGTACGACCCG	alt_4684_fdr	20	22	23	19	27	12	29	16	34	14
CAATGGGTACTTCAAT	alt_4684_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTGATTGGCAGTG	alt_4684_fdr	5	9	5	4	9	3	3	2	9	8
TTCCGGGCTCGTCGTG	ref_896_missing	47	66	49	59	76	41	78	45	88	35
TAGCTTATATGAGCGG	ref_896_missing	3	10	6	8	11	9	10	5	5	5
AAGGAAAGCTTGAGTA	ref_896_missing	1	9	2	0	2	0	3	4	1	2
TGGGAAAGTAGGACTA	ref_896_missing	18	30	16	9	26	10	15	18	25	8
TTATCACTTTTCCGCA	ref_896_missing	17	24	23	28	29	15	29	18	35	16
TATAATTATCCTTCGG	ref_896_missing	17	28	14	33	35	23	33	18	31	20
TCGTGAGAAGTAGTAC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GGGGTTCTTATACCCT	ref_896_missing	62	76	60	50	94	53	108	56	114	50
GTAAGCTCTGTTTTCA	alt_896_missing	17	33	22	14	32	24	26	7	26	14
TATACCGGAAGCTATG	ref_896_missing	7	1	13	5	18	7	9	13	13	8
ACGAAAGGGCTCTCAG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ATTTACATGGTAATAG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CAGGTCAAGATGTCAT	ref_896_missing	26	46	27	25	59	29	48	18	48	17
TGGCGTTTTTAAGATG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCAGGTAGGCAGTGTA	ref_896_missing	1	14	9	4	9	1	12	4	9	4
AGTTTGTTCGGTGCTC	ref_896_missing	6	10	3	5	2	5	9	3	15	5
GGATAAGCACCCACTT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TAGTCTCTGATCAAGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CTACCTGCCATAAAAA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTCCTGATCTAGAACA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
AAGGGGGATCTTAAGG	ref_896_missing	1	6	11	8	10	6	7	4	7	5
GCACTAGGGTACATAC	ref_896_missing	2	16	4	5	17	3	11	4	15	3
TCCTTTGATATTTGGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GTCTGAATACCTGGTT	ref_896_missing	5	21	15	6	24	12	10	13	13	8
AACCGGCTGTGGGTAC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCTGAGTACCTCCCAC	ref_896_missing	0	9	2	0	7	2	9	0	6	0
CCAACCAGAGAATTCG	ref_896_missing	3	5	2	4	5	2	10	8	9	4
GAACCAACCTAGTAGA	ref_896_missing	3	6	2	1	1	7	12	3	12	3
ACGGGGACGTCGCTCC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
AGCATTCAGGGTGTCC	ref_896_missing	0	7	3	1	4	3	6	1	3	0
CTAACGGCGCAGTTCG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GTGATGCTTACTCGGG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GCAGGACTGAATGTGC	ref_896_missing	10	15	8	11	12	6	10	11	14	6
AAGCCTTCTTGCACCA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ACTTGTGTAACACTCT	ref_896_missing	45	68	41	39	76	42	81	43	81	23
CCTATCCCCTGCTTAC	ref_896_missing	0	1	0	0	1	0	3	1	4	0
TGCCTGGGGCTGCGCA	ref_896_missing	7	5	6	1	14	3	6	8	9	5
ACCCCGACTTGCTAGC	ref_896_missing	12	13	12	8	25	11	7	1	21	4
TACAAAGTCTCCACGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ATACGCTTCTCCATGT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GTCAATGGCGATCGGC	ref_896_missing	8	33	6	6	36	2	35	9	26	12
TGTTTCAATAGCTGCG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GTACGACAAATATAGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GCTCCGACTGCCGGCA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GGCACGCTAAAGCCCA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TGCTTATCCTGCATGT	ref_896_missing	18	35	24	18	33	28	33	17	21	20
GCTGGTAATTTGTTCT	ref_896_missing	14	25	18	11	29	19	14	16	25	14
TCCGGAGCGTCTACTG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTCATCTCGACTCTGT	ref_896_missing	6	6	10	11	11	3	6	5	10	5
GAACGTCGTGAGAGTG	ref_896_missing	5	15	8	12	5	3	9	4	11	3
TGTTCGCAGTTTGTCC	ref_896_missing	4	12	8	12	14	12	7	4	11	7
CTTGATTATACAATAG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTCTCCTCAGGT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
AGCATTTTCTGCTCTC	ref_896_missing	20	20	12	14	20	15	38	15	38	13
GGCGTTAGGTAGTTTT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TGGATTTAGTATATGC	ref_896_missing	10	14	25	17	21	7	18	13	25	15
TTCGTTTCAAACTGCA	ref_896_missing	1	6	12	1	3	5	12	3	11	5
GCTGGCTGCCCTCATA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CTCAACCTGGGTATGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GACTTTAAAAAGCGTC	ref_896_missing	31	32	17	20	56	21	33	9	48	30
AGGATGGGTTTGTTCA	ref_896_missing	15	7	11	11	15	8	16	11	15	8
CGTATCGCACCACGAT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ACGGAATGCATACACA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTTATAAAGAATGGTA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ATCGAACAATCCTGCG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GGCATACTGCCAGGTG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TGGGGCGCTTTCAATT	ref_896_missing	6	12	6	9	12	6	16	5	13	4
TCAGCTCCGGTTAGGT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTTCTCTAGACGTCTT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GTATCGCAATCAGTAT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCCCCCGGCATTCTTC	ref_896_missing	5	10	5	6	19	11	15	8	12	3
TGGATATGGCTCGGCA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ATTCTCATTTGTTAAT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTTGATTGCTGA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTCGCTTGTCGAGGTT	ref_896_missing	51	79	50	52	77	48	64	36	47	46
AATCCTGCATTAGTGC	ref_896_missing	5	12	5	4	4	6	17	0	20	8
CCTCAGCCTGGCGAAT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ATGCCCTGGAAATGTT	ref_896_missing	19	18	14	17	22	14	26	11	26	12
CTATACGGCGGCAGCA	ref_896_missing	28	65	35	33	48	39	37	33	50	34
TGGCGGACGCAACTTG	ref_896_missing	3	5	8	4	6	9	6	5	7	1
AGTTCTCGGTACCTGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TGGGTTTCCCAGTCAT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GGTTGGTATTTGTTGG	ref_896_missing	15	27	18	11	33	20	31	18	26	16
CATCCGCCATATTTGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TAATGGTCCCGGGGTT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
GGAAAATTGCTAATTT	ref_896_missing	52	74	48	40	74	45	80	47	67	44
AGTGACAGATCGGTGT	ref_896_missing	6	11	11	4	6	6	18	10	15	5
GCTCAGAACGGTTCTC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ACCGTCTTACTTTACT	ref_896_missing	4	12	6	6	14	5	6	4	19	1
CTTACTGGATGCAGCT	ref_896_missing	20	36	22	29	35	18	36	29	32	17
TGTTCAACCATTGAGC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCTGTATAGGTCGTAG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCTCTCGTCACCTCTG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTAGAACGAGTCTTCT	ref_896_missing	9	11	18	6	16	11	20	10	25	9
CTGCATATATCTATGA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
AAAAGCGCTGGAGGGC	ref_896_missing	6	2	2	2	4	1	6	1	2	3
GTAACAATTCCTTGCA	ref_896_missing	16	25	20	12	28	15	20	13	31	10
GCAGTCTCTTCTAGGA	ref_896_missing	33	27	37	25	32	19	44	13	36	11
AGCCAGCTAGAATACT	ref_896_missing	3	3	1	4	10	3	8	3	5	1
TCATTTGTTCCTTTAC	ref_896_missing	1	10	6	1	5	1	3	4	9	6
TAGATCCACCCTACCT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCACAGGGCTTTTGTG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTTTAACTCTAC	ref_896_missing	20	36	20	35	31	16	34	29	24	20
ATGTCTCTGAGACGGG	ref_896_missing	4	9	15	6	9	2	11	3	6	4
ATTTGCTTTGCGCATA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ACCCGTGCTTTGTAAA	ref_896_missing	16	35	23	21	36	21	32	12	38	11
GGTCCATGGTTCTTGA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CAATTGTCGAGTGGTG	ref_896_missing	0	0	0	0	0	0	0	0	0	0
AGCTTCTTTAATGCCC	ref_896_missing	1	0	2	0	0	0	0	0	1	0
CGCCGGTTGTGGCTTT	ref_896_missing	7	18	11	18	18	9	28	11	15	5
TCTCCGGTGGAGTGGG	ref_896_missing	20	25	14	19	31	19	25	15	27	15
CGGCTTCTTCACTGGA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ACGGTTAGTACCCTAT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TGATTCTACCTTCCGT	ref_896_missing	0	2	1	0	1	1	2	0	2	1
TCCATCCTTTCAACCG	ref_896_missing	6	7	6	6	25	7	17	5	14	6
CCCGTATATTGGTCAC	ref_896_missing	14	32	17	27	37	19	42	20	43	31
AATGCGTTGTGTATCA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ACACTTTTTACTCTGT	ref_896_missing	12	19	16	23	45	20	26	26	30	21
CACTGTTTGTAACTCC	ref_896_missing	0	0	0	0	0	0	0	0	0	0
ATACTCAAAATATGAA	ref_896_missing	13	29	14	12	19	20	24	18	16	15
CTACTTGGTCAGTCTT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCACCGCTATCTCAAT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TGCTAGGCTTTTATTT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
TTGTCCTGGGCGTACC	ref_896_missing	13	17	11	12	19	14	13	7	9	10
CTACGGTGCCCGTTCA	ref_896_missing	12	13	9	15	27	12	26	11	30	11
CTTCGAAGGCATCGGC	ref_896_missing	7	7	8	3	8	1	4	4	5	1
GATAACATGTTCGATG	ref_896_missing	26	34	25	19	44	23	42	23	36	17
TTCAAAATGGATAACG	ref_896_missing	13	12	7	11	6	6	7	7	12	4
AGGGGTATCTGGCTCT	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CCTATCTCATAACCTA	ref_896_missing	0	0	0	0	0	0	0	0	0	0
CTCACCGGGACTCATA	ref_896_missing	8	28	17	11	19	7	28	7	27	9
CTATTCTTGGTCTGTG	ref_5032_upstream	53	33	39	44	33	45	41	30	27	37
ATGCCATCGCCGCATG	ref_5032_upstream	47	62	82	60	43	69	70	54	64	45
TGAGTATCTGCGGTAG	ref_5032_upstream	30	23	25	24	22	25	21	27	27	18
TCTTAGTGCCTTCGCT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CACCGTTCTACTTCTA	ref_5032_upstream	36	30	52	50	47	40	49	53	47	42
AGGTTATTCTCTGGCT	ref_5032_upstream	22	18	33	14	12	20	13	19	24	24
TGACGGGATAATGGTC	ref_5032_upstream	10	16	25	12	11	15	10	23	9	11
CAATCGTGTTATTTGC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCAATAATTATGC	ref_5032_upstream	269	216	326	223	193	237	225	217	208	231
TCCATCAAGATCTGTT	ref_5032_upstream	23	12	18	14	13	15	20	22	19	17
AATCGAGACTAAGTCA	ref_5032_upstream	3	3	1	1	1	4	2	0	7	1
GAGTGCCGGACCCGTG	ref_5032_upstream	95	81	110	76	84	97	77	77	83	73
AGCACCCAACACACGG	ref_5032_upstream	64	58	82	96	73	84	68	89	77	68
GCGTTCCTGTTACCCT	ref_5032_upstream	38	53	46	36	29	29	38	30	33	38
TACCTACCGTGGCTCT	ref_5032_upstream	66	65	86	79	75	59	85	75	84	74
AAGTTGCTCCATTGTC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
ACATCAGGGTTTCTCC	ref_5032_upstream	39	31	44	28	17	35	22	40	31	39
GCATTTAAATGCTAGG	ref_5032_upstream	16	9	17	15	17	18	15	16	21	18
TCTTATTGCTTTGTGA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCGGATTGTGTTACGG	ref_5032_upstream	1	0	2	1	3	6	2	3	2	3
AGTAACCGCGCGGGCG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAGCTTGAATACC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GTAGATGTAAGCTTCC	ref_5032_upstream	264	171	308	262	190	262	233	227	199	233
CGGGGGTTGTAGTTAT	ref_5032_upstream	38	47	47	46	38	41	40	40	45	41
CTGGTATTTGTGTCTT	ref_5032_upstream	64	43	66	63	46	58	34	52	43	37
CCATATCTCACTGCTA	ref_5032_upstream	75	67	130	100	66	93	93	117	77	85
GTACTCGCGCACGCAG	ref_5032_upstream	60	30	57	44	52	31	45	51	44	54
AGAGTGTCCTAATGGA	ref_5032_upstream	77	60	98	101	64	65	46	74	74	68
TTGCCAAGACCGCCGG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTATCACGGCCGC	ref_5032_upstream	194	138	233	179	137	145	130	163	145	140
CCCAGTTTTTGTCAGT	ref_5032_upstream	12	19	22	21	15	18	26	23	18	19
ACGAACGAGCTCGCGC	ref_5032_upstream	71	51	93	63	71	49	42	66	39	75
TTCCCGTCGGGTTTGG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGTGCTCAATGT	ref_5032_upstream	44	29	44	53	50	39	39	42	38	39
AAAATTTCATCGTGTG	ref_5032_upstream	85	86	131	108	83	104	69	106	89	97
TTTTCCGTTTCGCCAT	ref_5032_upstream	20	21	29	20	20	18	20	19	18	25
CTAAATGGCTCTCAAG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CATTGTCGTTTATGTT	ref_5032_upstream	27	9	22	12	15	11	20	11	17	10
CGCGCTCCTTGACCGC	ref_5032_upstream	74	55	85	75	90	66	79	57	65	68
CGCTAACATTATCCGT	ref_5032_upstream	201	111	209	169	138	165	119	179	110	145
TCTTCTCCCGTCGGGC	ref_5032_upstream	1	1	3	8	6	1	5	2	6	0
GGGCAAAACACCTCGC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTCTTTTACTGCT	ref_5032_upstream	75	81	89	75	66	78	78	83	57	68
GTGTGAGGTGAACCAT	ref_5032_upstream	36	26	46	31	30	48	40	44	47	37
TCCTCCGACTTTCCGA	ref_5032_upstream	31	22	36	28	31	31	33	29	22	26
TTTTTTGGATCCGGCC	ref_5032_upstream	13	18	16	12	12	11	13	16	7	9
TCGCCATAGATACGTG	ref_5032_upstream	33	35	32	51	37	32	32	41	37	35
CCGCACCTCTGTACCG	ref_5032_upstream	125	101	160	128	112	103	107	83	116	105
ACTGTTGCACTACTGT	alt_5032_upstream	49	60	76	64	72	66	62	63	43	54
GGGGCGACACCTAGCG	ref_5032_upstream	104	88	118	130	81	81	74	112	90	101
AGTTCAATGACTAATT	ref_5032_upstream	5	7	6	8	9	3	3	8	5	5
GAATCTTTTTTTGCTT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCAAGTTACCAGGCAA	ref_5032_upstream	46	40	105	62	55	57	45	63	44	56
TGCATCATTGCTTTCA	ref_5032_upstream	5	1	1	2	3	0	1	2	1	1
CGGCAGTACCTCCTTT	ref_5032_upstream	29	32	30	19	29	22	34	27	26	20
GTTTGAGCACACCCGC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCATACAGCTCTTCAC	ref_5032_upstream	12	12	22	16	15	18	13	20	15	17
TGCATATTTGCAACCG	ref_5032_upstream	66	36	48	57	35	45	45	34	36	33
GTGTTCTCTCTCATTA	ref_5032_upstream	107	99	139	128	102	120	96	110	91	107
GGGGTTTAATCGTGGA	ref_5032_upstream	12	5	10	6	7	12	9	10	4	9
ACTCATAGAGCGCACG	ref_5032_upstream	96	67	103	93	83	72	55	93	73	73
CATTGCTTCCACTATT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TATAGTATTAAGTTCA	ref_5032_upstream	13	10	30	19	21	19	15	18	18	14
CTATGCATGGTCCCGT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTTGCGTTGCCT	ref_5032_upstream	78	76	99	96	76	78	88	100	72	73
CTGTGGTCCTTTTAAG	ref_5032_upstream	47	39	76	60	37	53	53	62	42	54
TGTCATAGCCTGGCCA	ref_5032_upstream	8	8	9	15	12	11	13	16	11	12
CCCTTCTGGCTGGCTC	ref_5032_upstream	6	16	7	7	19	3	21	2	23	6
ATGTTTGCCGTTCATG	ref_5032_upstream	117	115	157	154	100	117	121	123	103	141
TGTTCCCAAGGATTTG	ref_5032_upstream	122	79	160	135	70	111	106	132	99	111
GGGAAACGATTCGCTT	ref_5032_upstream	27	32	30	28	30	14	21	40	24	23
CTTGTTCACATACATT	ref_5032_upstream	4	6	10	9	5	8	7	8	9	2
ATAGCTTGAAGGATTG	ref_5032_upstream	1	1	3	3	3	5	1	8	6	3
TGAGCCTCGTCATATA	ref_5032_upstream	14	22	25	15	18	8	16	12	11	23
TATTGACGCTTTCATC	ref_5032_upstream	0	0	0	0	0	0	1	0	0	0
GTCATTTCACGCTTGT	ref_5032_upstream	148	95	173	154	134	130	112	158	114	140
ACTCCCTTAGCGTCCT	ref_5032_upstream	19	45	20	21	25	14	24	9	28	21
TGTAACCGCGCGGGCG	ref_5032_upstream	128	70	172	158	105	156	128	153	92	128
CATTCTAGAACAGTTG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TTAGACGCTAATCCAA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GGATTTTCAATTTTGT	ref_5032_upstream	17	11	20	11	7	19	9	11	12	19
CTTTGCTGCAATCTAA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGGGCATAACGAT	ref_5032_upstream	257	212	335	265	217	274	218	247	242	253
ACGAGTGGCTCTTCAT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CGAATTTTTTCCCTCC	ref_5032_upstream	13	11	24	17	13	21	10	13	14	8
CTGAATCTTCTACGGG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTACCGCTTACGCAGT	ref_5032_upstream	11	15	15	17	16	17	15	22	12	10
ACAACAAACTTCGGGA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCCGACTTTCTTC	ref_5032_upstream	37	45	52	54	48	40	61	34	51	33
GGTTTCGGAATCCATG	ref_5032_upstream	20	15	33	29	16	22	15	21	29	24
GTCGACGGTCTGTACG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGTCTTCCGTCGT	ref_5032_upstream	26	15	37	32	12	18	15	20	23	18
CTGTCGACAAGTCAAG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
AATCAAGACTAAGTCA	ref_5032_upstream	30	31	55	25	21	39	43	30	28	23
GCTCCCATCACATGCC	ref_5032_upstream	25	46	21	21	45	9	45	25	47	15
GGGACAACAGTACGGC	ref_5032_upstream	52	28	43	30	26	40	37	42	37	41
GTGCTTGCAAGCTTGC	ref_5032_upstream	20	24	35	37	16	23	23	23	24	21
TCTGTGACTTGAAATA	ref_5032_upstream	60	44	51	51	67	36	47	46	56	47
CCCCGTCGTTTGGTTC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTCGGTTTGCATT	ref_5032_upstream	9	4	10	5	4	7	4	7	7	4
TGATCTGTCTGAGTGT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTTACGCTACTCATCA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGTCCAGATTGTT	ref_5032_upstream	13	11	9	17	7	18	8	9	6	8
TCCTCTAGCCCGCGAC	ref_5032_upstream	5	12	20	10	13	13	8	11	11	8
TCGAGCAGATTTTCAT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCCCACCTCCCTG	ref_5032_upstream	7	4	8	6	4	7	0	12	4	4
ACGCTGACGCTCCGGG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GACCGGTAAGTTGGCC	ref_5032_upstream	64	54	68	76	45	61	61	52	42	63
GTTCGCTTAACCGAGG	ref_5032_upstream	17	21	30	18	21	21	16	22	19	24
GAGAGACTATGAATCG	ref_5032_upstream	22	9	25	21	16	13	17	14	8	17
ATATACGAATAGGAAT	ref_5032_upstream	10	16	14	10	8	8	16	8	15	5
ATCAAGCTGGGCTAAG	ref_5032_upstream	65	56	88	43	55	63	61	75	57	50
ATGTCACGTATTAAGC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCTGCGAACAACT	ref_5032_upstream	57	39	49	62	34	46	36	46	41	67
CGATCTGCGCGGAGTT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTCGTCGCGCAAT	ref_5032_upstream	47	44	74	70	48	64	48	55	62	55
ATTTGACGAATCCATT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTGTTTAGAAGTC	ref_5032_upstream	202	136	204	184	160	157	141	129	165	163
CCTCGGCGTCCCATAG	ref_5032_upstream	24	18	32	31	33	32	19	34	23	17
TTAAGACTGAAGCCGC	ref_5032_upstream	30	37	42	42	24	23	39	34	41	26
CTCGCTACTGGCAACA	ref_5032_upstream	7	13	5	8	6	10	8	7	9	2
GAGAGACTATGGGTAA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTATTTTAATGCCTAC	ref_5032_upstream	15	15	24	10	11	18	13	13	8	9
GAGCCCTGCCGCGTTT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGACCGCGGAATTCCG	ref_5032_upstream	52	35	52	45	31	38	41	31	35	42
GCTTGCTATTTCCTGT	alt_5032_upstream	9	3	10	7	7	7	8	5	6	7
CTATAACCTTTATTAC	ref_5032_upstream	657	560	807	634	559	679	591	619	599	589
GTTGGGCTTGCAAAAG	ref_5032_upstream	83	76	133	90	92	100	76	98	70	76
GCCGACTGTTGCTATT	ref_5032_upstream	6	7	3	4	5	4	3	3	5	5
TCCTTCTGCTCTTGGT	ref_5032_upstream	3	7	13	10	5	9	11	10	15	8
GCAAGCACCCCTGCTA	ref_5032_upstream	50	40	47	66	47	61	32	53	50	50
GCGCCTGAAATTTAGC	ref_5032_upstream	132	108	191	172	124	150	85	130	101	158
GTGCGTTGTCTTTTGT	ref_5032_upstream	18	12	14	19	14	9	12	7	10	5
CGGCAACTCGTGGTAG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTACGCTTTCTAT	ref_5032_upstream	52	47	55	51	57	62	60	57	69	60
TTTGATGTTTGACCTG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
AATACGCGGTACCAGT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
AGATTGTGCTGGCGCG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
AGGGGACGCTCTCATT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
AGGACGTACCTTTCTT	ref_5032_upstream	28	21	48	53	38	34	39	35	38	50
GTCGCCAGCGTTTGGG	ref_5032_upstream	147	115	161	128	98	113	119	127	116	117
TTTTATAGGACAACAA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GACGGTTCTGGACTAT	ref_5032_upstream	93	67	111	98	76	77	113	79	86	74
AGTGTAAGCTTCTCCG	ref_5032_upstream	12	14	21	15	19	14	24	18	23	13
TGGACAGTGTCTACCC	ref_5032_upstream	350	280	395	340	290	286	311	285	282	293
TTGAGACTGAACTTGG	ref_5032_upstream	76	70	80	100	78	85	76	58	68	48
CCGGTAGCCGATGATG	ref_5032_upstream	16	20	19	14	28	19	28	11	27	18
AAAAATGGCATAGTCC	ref_5032_upstream	320	207	402	332	245	352	275	289	310	271
TGGGGGGGATCTGGGT	ref_5032_upstream	75	36	78	48	41	67	44	70	58	60
TTGCGGTGCGAGTTCA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCCAATCATTATACAA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATTAACACTGAACTCG	ref_5032_upstream	45	46	74	41	50	49	52	48	52	55
ATCACCACGTACTTGA	ref_5032_upstream	70	47	90	68	36	48	46	55	44	42
CTTTTAGCAACAATTG	ref_5032_upstream	361	290	452	333	295	318	332	355	368	311
ATTCGCCCGTAGGAAA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTCTTAAACTTTG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTGGGCCCGGACC	ref_5032_upstream	71	48	119	107	66	69	56	88	67	76
TTTGGTTCGGCTTGCG	ref_5032_upstream	59	58	78	65	66	61	73	57	48	41
TTTGGTGTTTGGTCCG	ref_5032_upstream	189	154	227	192	109	186	195	139	158	181
ATATTTGCTGAGCCGT	ref_5032_upstream	131	84	165	105	121	117	101	114	103	98
AGGCATGCGCCGACCA	ref_5032_upstream	284	237	400	352	244	329	264	340	276	301
TTGGCTAACGTAAGGA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCAATATCCGGT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CGTTATGCAACTTTTG	ref_5032_upstream	113	88	115	119	104	127	107	111	127	93
CACCTTCCGGTTAAAG	ref_5032_upstream	75	53	89	65	69	56	65	66	60	50
TAACAACATAGTCTTA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CACGGACCTTTGCGAT	ref_5032_upstream	34	30	39	31	23	38	17	35	21	36
AGTGGTAAAGTCGGTA	ref_5032_upstream	11	13	27	12	12	13	20	17	11	24
CCAGTTTATGTTATTT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTATTGGGCGGAC	ref_5032_upstream	68	51	79	76	78	50	79	65	47	70
GTCTATAAGCCTATGG	ref_5032_upstream	21	23	26	18	15	14	22	20	15	17
GATCGTGTCGAATTGA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TAATGTGCTGTTTTAA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCCTCGGAACACT	ref_5032_upstream	52	50	82	48	56	52	55	64	47	60
TTCATGATCACTGCTA	ref_5032_upstream	8	9	10	7	9	15	4	12	7	12
GCTCGTTATTACTAGC	ref_5032_upstream	13	16	21	14	28	18	16	17	15	16
TGACGGGGTGATAGCT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTCCTTTTAAAGT	ref_5032_upstream	282	216	350	283	222	270	267	257	213	245
TAAGTAAATTTGATTC	ref_5032_upstream	45	56	47	61	26	36	45	54	29	46
ACGATAGCGTATAAGA	ref_5032_upstream	65	51	69	72	46	50	62	64	52	63
TTGTGCTGACGGCGTG	ref_5032_upstream	104	81	111	121	87	111	82	130	70	90
TTCACTCGTGGGTACA	ref_5032_upstream	67	65	94	89	69	71	67	107	69	65
TCCATATGCCCATTCC	ref_5032_upstream	32	28	43	33	22	27	21	36	28	30
ATCTGTCAGACAAATA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCAATAGAGCGGGCTT	ref_5032_upstream	1	1	0	3	1	0	1	1	2	1
TCCTTGATCACGTACT	ref_2853_fdr	191	153	234	189	134	173	152	173	148	157
TGGTAGCCAAGGCCAC	ref_5032_upstream	22	16	29	21	10	14	12	15	15	26
TCCACGAACGCATAGA	alt_5032_upstream	79	68	91	77	76	64	87	67	84	62
TCCGTAGTTTGGTTAT	ref_5032_upstream	23	23	10	13	10	12	14	13	11	15
GGGCGTTTAGTTCTAC	ref_5032_upstream	22	17	34	27	31	19	22	24	20	31
TCTGTGTTGTAATAGG	ref_5032_upstream	4	4	7	2	1	4	2	0	3	2
GTACACTGCCTACGTA	ref_5032_upstream	13	25	18	22	37	17	25	18	21	9
GCCCGTCTCGCCTTTG	ref_5032_upstream	20	44	10	11	41	20	31	9	45	11
AATATTGTGTAAGGAT	ref_5032_upstream	4	31	14	16	17	9	17	11	23	12
TTCATCTCTAAAAGCT	ref_5032_upstream	9	6	12	8	7	7	12	10	15	8
CGTGCCGTAGCATATT	ref_5032_upstream	14	13	18	12	21	20	14	20	15	15
TGCGATTACATAGTCC	ref_5032_upstream	47	32	61	42	38	36	36	56	35	53
ACTCCTTCAAAAACGC	ref_5032_upstream	1	0	0	0	0	0	0	1	0	0
TCTTTTTTCATGTTCT	ref_5032_upstream	101	59	139	111	52	86	74	84	60	78
GCGTCTATAGCGCCTG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTCCGGCGGCTAG	ref_5032_upstream	32	17	32	31	27	32	21	34	14	35
CGACTTCAATGTTTTC	ref_5032_upstream	141	113	178	166	110	136	117	146	125	134
TATAGGGGGGATCCCT	ref_5032_upstream	65	41	74	81	75	74	58	72	60	63
TTTCGTAGAGGACTTT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCCAGAAGCGCAA	ref_5032_upstream	47	62	84	68	54	77	51	68	52	71
ACTCATGCTTTACCTT	ref_5032_upstream	26	16	42	21	23	30	26	27	15	23
TTTATGCTGTGTTTCT	ref_5032_upstream	39	17	58	38	14	48	27	30	42	30
TAGCAGTTTTCAAGTA	ref_5032_upstream	180	156	212	167	187	155	158	198	147	158
ATTCCTGTTGAAGCTT	ref_5032_upstream	1	6	9	7	1	9	5	2	4	6
TGTATCTGCTCCGTTT	ref_5032_upstream	30	24	45	39	28	34	33	53	27	49
TGGCAATTGAAGCTCG	ref_5032_upstream	208	153	271	212	167	199	193	191	188	170
CTGACTTGGTTCAAGC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGCCGCGTACACT	ref_5032_upstream	2	1	0	0	0	0	3	0	2	0
CCCGCATTTATGTTCG	ref_5032_upstream	4	11	1	4	9	1	13	1	15	3
CACTGTTGGAAACGTA	ref_5032_upstream	28	21	23	27	12	32	20	22	17	27
TTCTGTCAGACAAATA	ref_5032_upstream	201	140	221	201	161	187	169	162	156	175
ACGGGGCATCAATCCT	ref_5032_upstream	39	22	30	44	27	23	20	29	31	33
TCTTTTACCTTTCTAC	ref_5032_upstream	45	25	30	27	15	20	26	36	18	30
GCCGGTAAGCCCTATT	ref_5032_upstream	16	10	22	23	27	25	11	31	19	21
TAGTACAGTGCCCTAC	ref_5032_upstream	43	30	38	41	55	33	46	39	40	38
TCTAATCACACAGCAG	ref_5032_upstream	3	3	11	3	3	6	3	2	2	2
ATATTCACAGATACCG	ref_5032_upstream	44	39	57	45	20	49	26	42	23	36
TAGCGCGCTTAACTAT	alt_5032_upstream	153	103	206	148	150	152	173	129	130	142
TAGCTTTTTCAACTTC	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGTTGGGTATGTT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TAAGAAGTGGCAGTAA	ref_5032_upstream	46	41	58	59	46	46	38	72	40	43
GGCTCTCTCTCTATTA	ref_5032_upstream	145	80	168	131	94	135	113	129	91	123
CGTAAAAGCTCCGGGC	ref_5032_upstream	2	2	1	1	0	0	2	0	1	0
CAAAGTTTCGATGCCA	ref_5032_upstream	11	12	22	13	17	15	13	18	16	18
CTTCTGATCCTCCATG	ref_5032_upstream	23	20	31	22	14	16	7	17	28	19
AGTTCAGGCAACGGTT	ref_5032_upstream	8	7	12	7	3	5	19	5	11	14
TCGCAAAGCTCGTTGT	ref_5032_upstream	43	31	56	50	32	47	33	42	45	37
AAATTCATTAGCCAAG	ref_5032_upstream	173	145	223	199	132	172	125	172	163	130
GCAACGTCCCGCCTCT	ref_5032_upstream	20	25	33	38	30	24	34	30	26	24
CAAAGCTATATCCTTT	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCTTATGCCGTACGAG	ref_5032_upstream	8	5	9	6	7	7	7	11	8	4
CTACTTTCGTAAATCG	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTTCGTCCTCCAG	ref_5032_upstream	190	121	267	171	154	177	141	184	130	176
TCAGAGCCTGCTCGTA	ref_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTCCACTCATGGT	ref_5032_upstream	133	120	181	124	106	120	86	129	119	125
TTCTATACTTACTTCT	ref_5032_upstream	18	17	39	18	26	16	16	21	16	15
CATAAATCGAGTTGCT	ref_5032_upstream	17	9	18	16	10	17	6	20	11	12
CTAGTCGGTGAGTGTT	ref_5032_upstream	11	10	9	7	6	6	20	12	9	13
TCCGCACATCCTTGTT	ref_5672_new	33	25	21	34	27	26	24	29	30	32
CGTATATGTCTTCGTA	ref_5672_new	12	4	23	13	9	10	7	13	13	5
CTGGGAGGAGGGACGC	ref_5672_new	22	22	27	34	21	20	33	25	28	18
TACGTCTTCCGCGCGG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CTCTAATATTGTGGGC	alt_5672_new	235	221	287	227	201	235	222	245	224	194
TCACCATAATCTAACG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
ACAGAGAGCCTCGCGG	ref_5672_new	8	6	12	2	4	3	5	3	1	4
CCAGCGCAACGTTTTT	ref_5672_new	0	1	3	3	2	3	6	1	6	2
GCATGACCGTAAGAGC	ref_5672_new	53	40	46	42	45	18	36	31	35	34
GTCTACCCGGGATTGC	ref_5672_new	0	0	0	0	0	0	0	0	0	0
AGCGTAGTTGTCCCTC	ref_5672_new	49	51	55	44	65	33	60	40	43	42
ATATTTCGATTTTTGC	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CCTACAAGTCCTTTCG	ref_5672_new	47	42	42	31	36	32	26	39	32	36
GTGCATAGGTAACATT	ref_5672_new	1	2	1	4	5	1	1	3	4	2
CTTCGCCTGGGGTACT	ref_5672_new	0	0	0	0	2	0	0	0	1	0
ATTCTTCTGTGAATTA	ref_5672_new	9	5	11	9	6	7	5	8	12	9
ACCAACGATCAACATT	ref_5672_new	15	5	6	9	8	15	2	9	14	11
ATATAAGTCAGTCATT	ref_5672_new	4	11	8	4	7	9	5	6	6	8
TTAGAAGTTTTGTCTG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
ATTCGAAAGTACTAGC	ref_5672_new	100	126	147	108	93	92	110	93	113	105
ATTTCCCCTTTAGGGA	ref_5672_new	31	36	47	39	58	47	55	35	41	37
CTCTCAATACATCTAA	ref_5672_new	33	26	50	36	33	36	37	25	37	29
GAGGCTAGCATACTTA	ref_5672_new	7	6	8	12	10	11	12	7	18	7
TGCGGTTTCACGCCCT	ref_5672_new	46	27	27	45	39	30	25	38	34	32
AAAGTTAAAACCGCCT	ref_5672_new	9	12	12	20	6	6	15	15	12	16
CTGAATCAGTACATCC	ref_5672_new	76	52	88	80	73	82	77	80	75	56
CTTCAGAGCTTAGACC	ref_5672_new	14	16	17	11	12	13	20	10	18	8
AGCCTCAAGGGAATGG	ref_5672_new	59	67	82	70	74	80	69	69	71	51
TCAAGTTAGCTTTTAG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
TTGCGAATCACGATTG	ref_5672_new	9	11	11	9	10	12	13	8	10	11
TCTGCGAAAGAAATCT	ref_5672_new	16	11	24	19	11	14	15	14	15	8
GTAGTCCACGGGCGGT	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CTTGGCGCGTCTCTTC	ref_5672_new	6	9	11	14	9	14	10	13	7	10
TCATCACGCTCTCTCA	ref_5672_new	4	8	11	3	11	7	10	9	12	4
TGCTACACATAATTGC	ref_5672_new	16	35	24	34	31	13	17	19	24	26
TAATAAGCCATTTCCT	ref_5672_new	16	17	18	17	12	17	10	10	21	19
CTGTCAGCCGTTTCTT	ref_5672_new	0	0	0	0	0	0	0	0	0	0
TAAATGCTCTGTGTCT	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CTCGCAGTAAGTGAGA	ref_5672_new	0	0	0	0	0	0	0	0	0	0
ACTCGGCGGAACAACT	ref_5672_new	8	18	12	8	19	14	15	8	10	10
CCCCTGTCTTAAAGTG	ref_5672_new	19	39	24	29	34	18	40	18	29	17
TCCGTCCTAGGCGTTT	ref_5672_new	4	1	1	3	8	1	3	0	2	1
ACTCCGATCAAGTCGA	ref_5672_new	0	0	0	0	0	0	0	0	0	0
TCAATCGCATCAGGTA	ref_5672_new	0	0	0	0	0	0	0	0	0	0
TAACGAATCTATTATT	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CCGCACAAAACGGCGC	ref_5672_new	2	0	2	1	0	2	1	0	0	3
TACGTGTATAGGTTCA	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CACGCCCTACATTGGC	ref_5672_new	26	37	36	27	34	24	34	22	34	19
GACTCGTCTGGGACTG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
ATTATTTTCCCTAATA	ref_5672_new	4	5	7	5	3	7	4	7	9	9
TTTATATCCTTATTCT	ref_5672_new	21	18	38	20	19	23	21	15	18	17
GCACGCGGTCCTTGTG	ref_5672_new	13	92	14	18	60	16	65	21	71	8
CCATTCGGTTGACCCC	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CATTTTCCAAATTGTT	ref_5672_new	26	33	40	34	41	29	38	32	38	30
TTCAGGAGTGGGAATG	ref_5672_new	37	18	27	26	20	20	23	36	27	17
CTTCAGCTGGTAACTA	ref_5672_new	5	12	8	8	11	12	8	7	9	7
AGTCACAGCGTGCGAA	ref_5672_new	56	49	61	45	46	41	39	40	44	40
GAATCGTGAGGATTTG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CCGAGAGCTGTTTGTT	alt_5672_new	16	28	24	21	20	18	18	13	18	24
ACACGCTGATATGAAG	ref_5672_new	30	24	22	24	33	21	28	22	29	21
TTTCGGAACCGTGGAC	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CTTGGCACGTTGATTT	ref_5672_new	16	13	21	16	9	13	11	16	19	10
AGAGCACGTAACTGGC	ref_5672_new	61	42	56	66	60	53	58	49	55	55
TCTGTATAAACCCTTT	ref_5672_new	5	5	2	4	6	4	4	4	6	4
CAATTGGTTTATAAGA	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CACGTTCACGAGCAAA	alt_5672_new	47	54	50	55	46	42	58	46	41	36
CGTTCTACACCGAGTC	ref_5672_new	0	0	0	0	0	0	0	0	0	0
TACCCAACTTGACCTC	ref_5672_new	0	0	0	0	0	0	0	0	0	0
TATAGCTCTTAGTATT	ref_5672_new	16	8	18	19	13	17	8	13	17	9
CTGTAGGACGTAGTTA	ref_5672_new	0	0	0	0	0	0	0	0	0	0
AGCCTACTTGATACCT	ref_5672_new	8	17	7	9	6	5	14	3	13	0
TTACAGGTAGCATGTT	ref_5672_new	18	23	11	10	25	18	17	14	21	9
TCAAAGCCTGTGCTCG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
GTTTCAACTGGTTACT	alt_5672_new	359	317	369	368	335	328	332	302	370	277
CCGGCTCTCTTGCCCT	ref_5672_new	9	18	6	10	7	7	9	7	13	9
AGTTAACGAGAGTCCC	ref_5672_new	29	23	19	19	15	32	17	20	22	24
CGTTAGTTCTGGGCAT	ref_5672_new	31	43	32	22	21	27	37	27	34	32
AAACTCCTATTCGTTT	ref_5672_new	25	31	45	33	37	29	36	23	29	28
ACGTTGCGGGTGGAGC	alt_5672_new	34	37	53	49	38	42	49	36	35	41
ATATTTTTTCCGTTTC	ref_5672_new	44	45	63	48	43	49	36	40	49	52
TCTGTATCCTGGTCAA	ref_5672_new	0	0	0	0	0	0	0	0	0	0
GGCTTGTAATTGTGGT	ref_5672_new	17	14	31	24	17	12	19	14	24	19
CCACAACGACTAAAGG	ref_5672_new	6	11	4	7	4	5	2	9	6	4
GTATTCGAGTGGTTAA	ref_5672_new	8	7	17	10	8	7	8	12	14	11
ACTGCGTCCCGCTCGC	ref_5672_new	15	10	13	15	13	11	11	20	13	13
TGTCGAGCCCGGTTGC	ref_5672_new	3	4	2	4	7	3	7	2	4	6
ACCCTATTTGGGGGAC	ref_5672_new	50	29	48	42	45	37	45	33	45	36
ATCGGTTTCGATTTGC	ref_5672_new	5	1	6	3	1	1	3	2	3	1
CGACTAAGTGGTGAAC	ref_5672_new	7	7	6	13	7	11	12	3	16	7
ACCGCCAGCGCCTTGT	ref_5672_new	0	0	0	0	0	0	0	0	0	0
GTATTCTGTCTACGTA	ref_5672_new	16	11	20	9	24	16	11	12	15	10
AATTATCAGGAGTGGG	ref_5672_new	16	26	29	31	21	24	27	28	29	20
CGGCACTCACTGTAAA	ref_5672_new	18	23	26	41	21	20	23	22	17	22
ACCGTTACTTGATTGC	ref_5672_new	31	44	36	17	42	29	38	24	38	20
TAGTCCTGTTAACATA	ref_5672_new	39	33	41	34	41	32	39	31	49	35
GTGTTAGACCGTAGTC	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CACCTCGATTTCTGAT	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CTTGTCGTACGTCCCG	ref_5672_new	0	0	0	0	0	0	0	0	0	0
CGCCGTGCAATGGCAA	ref_5672_new	5	3	6	2	1	2	2	6	8	1
TAGCTAATTGGGACAC	ref_5672_new	14	19	30	12	29	15	25	18	18	20
CAACAGTACTCAAATC	ref_5672_new	16	25	10	20	24	18	29	28	19	20
CGAGTGACAGCCCAGC	ref_5672_new	33	50	46	35	37	44	51	30	29	28
GGTTGTACCGTTGTGA	alt_5672_new	18	20	16	14	15	14	12	16	9	5
GGCCCTCTAGGATGCT	alt_1026_negative	8	8	9	10	11	12	8	7	6	7
CATGTGCTTCATTGCG	alt_1026_negative	195	206	244	187	219	166	198	196	219	137
CGAGGACTGGAGTAAT	alt_1026_negative	65	84	96	74	71	76	77	81	63	64
AGTGAGAGGGAAATAG	alt_1026_negative	34	29	34	36	18	19	17	20	43	14
TAAGAACGTTGTTTAT	alt_1026_negative	27	9	14	23	20	15	11	16	22	16
CCAGGTACTAGCGAAA	alt_1026_negative	97	162	106	89	173	86	205	87	185	83
CGCAAGATATAGTCGG	alt_1026_negative	8	6	11	8	6	9	12	7	12	16
CGGTCTAGAGAAGCTT	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
GATTAGCTAATAACAC	alt_1026_negative	32	29	39	30	19	23	38	27	47	27
ATATTTGTTTACGCGT	alt_1026_negative	35	34	48	43	21	41	43	19	25	22
AAGATCAGGAGCTCGT	alt_1026_negative	9	4	11	4	9	8	12	2	12	7
TACCCGTGATGTTAAA	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
GTTCCTTCTTCATCGA	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
CGATTTTAGTGACGTG	alt_1026_negative	13	6	15	5	9	8	7	11	10	9
TAAAGCCGCCCACGTG	alt_1026_negative	22	16	18	19	12	24	19	15	21	15
CTCAGATTTCTTATTT	alt_1026_negative	22	35	33	32	33	30	38	29	46	23
ACCTTCCAATAGGTAC	alt_1026_negative	12	10	15	14	24	14	9	7	14	11
CGTTGTCGGCTGACCT	alt_1026_negative	27	30	23	19	15	29	22	20	17	20
CCTAGGTGTTAGAGGA	alt_1026_negative	21	38	29	27	30	29	47	22	58	26
TCGACCGTGAGTATCC	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
TACACAGTTAGAGCTG	alt_1026_negative	63	66	112	56	70	70	80	73	83	47
ATGATGCCTAACGCAT	alt_1026_negative	27	22	25	31	36	28	21	24	25	28
TGTAGTGTTTGTCTGA	alt_1026_negative	29	54	38	35	41	39	59	21	57	28
GTGATGCAAGCAAATG	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
ACCTCCTTACCTGTCG	alt_1026_negative	8	50	12	17	39	9	37	13	41	10
GTCGATCGTTGAGTTC	alt_1026_negative	22	21	22	26	12	23	24	14	34	23
GATACACGCCTATAAC	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
GTTTAATGATTCTTTT	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
GTGCGGCTATTAAGTA	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
CAGTGCATCTGTTAAG	alt_1026_negative	13	19	27	22	9	15	10	28	13	9
CGACGTGCGGCTAGGC	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
AAGTGGCCCACGTTTC	alt_1026_negative	136	163	184	170	153	149	188	151	196	140
CCAAGTCCGCGGAGGT	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
ACAGACTCTTCCTTAC	alt_1026_negative	61	57	64	61	74	58	83	53	53	63
TCGTATGTTAGCAGCA	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
GGCCTTGAGCGGTGAC	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
GGGGTATAAATAGCTG	alt_1026_negative	39	41	49	47	59	46	45	45	47	30
AGCTGGCAAAAGGGTA	alt_1026_negative	7	15	16	7	6	17	18	8	20	15
GAGGAGAACCCACGGA	alt_1026_negative	1	1	4	3	2	2	3	2	3	1
TACTTATTCAATCAGA	alt_1026_negative	11	16	20	11	12	13	13	10	12	8
GTGCTCTCAGTCCTTG	alt_1026_negative	22	38	26	31	32	20	36	31	35	35
GGCATATCGAAGAAGG	alt_1026_negative	20	20	18	25	13	12	17	10	20	14
GCTTCCCATAGAACAG	alt_1026_negative	57	67	41	50	57	34	56	37	55	43
CCCTGGAAACTGGATA	alt_1026_negative	18	7	15	15	14	13	19	7	11	13
GTAAATTGGGTCTTTT	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
CTCGCGGCCTACCAAA	alt_1026_negative	10	11	12	13	13	3	5	9	8	6
CCGTAACTCCACCGTC	alt_1026_negative	5	13	11	9	17	7	29	5	11	8
TGTGCGCACATGCCCT	alt_1026_negative	34	50	38	44	47	24	29	20	47	34
ATCTCGTTATCATGCG	alt_1026_negative	34	38	47	31	41	22	35	50	41	38
TCCACGTCAGGCACCT	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
GTATACGAAGTCCCAG	alt_1026_negative	151	149	199	142	157	167	161	171	186	161
GCCCATGCGCTCACGG	alt_1026_negative	38	34	51	65	41	31	40	43	47	47
CTCTTTCTCTGGCTAA	alt_1026_negative	47	54	55	49	69	42	69	37	82	53
GTTTCCGGAGTCCGTT	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
CAGATTTATCGGACTC	alt_1026_negative	28	28	46	28	37	28	37	39	48	29
ACTCAATCAGCTGAAC	alt_1026_negative	9	5	15	7	6	2	7	6	7	8
TGCGGTAGTAGTAGAC	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
ATCTAAAGGACATCGT	alt_1026_negative	11	14	11	12	9	6	10	14	13	9
CGGGTCTATATTAGCC	alt_1026_negative	13	10	9	11	4	8	12	10	13	15
TACCTACAGCGAATTG	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
TACCGACACCTAGCGG	alt_1026_negative	90	96	117	93	109	66	104	86	95	92
TGTTGAATGTACGCCA	alt_1026_negative	9	7	13	9	11	8	11	10	7	12
AGTTTGAACAATATTG	alt_1026_negative	11	11	15	18	13	16	19	14	18	14
CGCGAGAAAGTTTGTG	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
TCGTGATCGGGCCTTG	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
CGCATTGAGGCGCAAC	alt_1026_negative	10	6	3	6	5	8	2	6	4	2
GCCGCTATCGGCACCT	alt_1026_negative	83	97	98	92	94	69	119	99	109	74
ACACTCTGTATACCGG	alt_1026_negative	6	10	8	1	18	2	10	5	14	1
CATGTCAACCTAGGAA	alt_1026_negative	38	37	36	34	41	22	51	30	38	27
TCGATACAGATACGAT	alt_1026_negative	76	67	93	79	63	81	86	70	102	56
TCTGTTAGTGCTTTTG	alt_1026_negative	7	21	9	14	14	14	14	11	18	11
AGGCCCAACGTCTGGC	alt_1026_negative	2	4	2	5	7	8	8	3	7	7
GTCTGCCTAGGACATA	alt_1026_negative	6	5	12	7	5	7	13	4	6	5
GCACCATGGTTTCTGG	alt_1026_negative	18	19	20	14	15	19	11	10	19	14
CCGAATTCGCCTCGTT	alt_1026_negative	3	8	5	8	8	11	7	11	6	9
ATCAGCAAATGTCCAG	alt_1026_negative	11	8	16	10	8	9	10	9	8	9
TCACTATTTAAATTTA	alt_1026_negative	32	31	43	34	34	26	33	28	40	25
TCGAAGTGTAATCTGA	alt_1026_negative	56	31	56	58	59	59	29	42	65	35
CTTGTGGAATGGTGGA	alt_1026_negative	24	14	24	27	14	15	21	23	29	15
GTTGATACCTCTCTAA	alt_1026_negative	22	21	19	22	21	16	15	13	22	14
AACTTGCCTTTGGGTT	alt_1026_negative	15	15	4	7	9	9	6	9	10	6
GTATGTAACTTGTTTC	alt_1026_negative	7	7	19	16	24	8	24	13	19	11
TCTGTTTTGCTTGGAG	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
CTGAGCGGGACGTTAA	alt_1026_negative	45	42	38	44	27	33	40	29	33	31
CAATTATGCGGTATAT	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
CAGCCGAAACAATGAG	alt_1026_negative	12	30	8	9	17	7	35	9	37	13
CTATCGGTCGAGTCAT	alt_1026_negative	13	17	25	13	16	10	17	4	23	7
ATCAGGGTGATTCTCT	alt_1026_negative	35	38	41	40	33	38	40	42	40	45
TGTCCATTCATACTGA	alt_1026_negative	35	59	32	44	46	33	63	37	63	23
TGGGCTCCATACCAGA	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
TCCACACCGTTAATAT	alt_1026_negative	22	26	22	24	30	9	33	17	21	19
ACCCCCTTATGCTGTG	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
TTACTCGCAATACTCC	alt_1026_negative	1	18	11	6	36	3	18	10	12	11
GTGTCCTGATACGCGG	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
ATACTGTACAGACACT	alt_1026_negative	10	0	2	9	7	5	14	2	2	4
TATTTCGCCGTTTTGA	alt_1026_negative	74	74	106	75	65	67	81	67	89	73
TTTAGGTACCGCCGCC	alt_1026_negative	0	0	0	0	0	0	0	0	0	0
ATTATGGGGTGGTTGC	alt_1026_negative	64	66	63	47	52	51	63	54	67	49
GTTGATGTTATGGATA	alt_1026_negative	7	13	17	12	18	13	17	10	20	11
CGACTCTTCAGTTCGT	alt_1026_negative	52	67	43	40	63	35	49	54	59	56
CATTTCCTAATTGAGC	ref_3730_missing	6	9	4	3	8	5	4	5	4	0
CGTAATTCACCGTCTT	ref_3730_missing	34	39	42	34	49	16	53	27	50	30
GTAAATTTGCATTTAG	ref_3730_missing	18	33	23	27	30	16	32	27	29	16
CCTCTTTACTGGGGAC	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
ACTTTAGTCTACATTT	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
GGGAGCTCGTGCGCGC	ref_3730_missing	69	97	74	67	101	41	102	67	99	51
ACGTGTTCTGGCAATA	ref_3730_missing	4	16	6	7	17	8	8	9	12	4
GGTCGTGCCTACTCTG	ref_3730_missing	50	59	60	58	74	32	71	53	79	42
ACCCTCTAGTGAACAG	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
CAGTCTTTGCGCCTCT	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
GGTTAAACCAAATTTT	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
GTGGTTAGTCATTCAA	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
TTAAATCGTGGCTTGG	alt_3730_missing	9	5	4	1	3	4	2	5	9	2
AACTTCTGGTTCATAC	ref_3730_missing	20	17	20	23	25	17	16	16	17	7
AGCCGGTCACACCGCC	ref_3730_missing	12	26	12	7	16	5	26	4	9	8
ATGTCATTGGTTCCGC	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
ATCCAATCCGATCTAG	ref_3730_missing	21	26	17	21	30	18	32	19	26	13
GCCCCGGCTGTCATAC	ref_3730_missing	20	29	31	14	36	22	47	15	33	16
ACACTTAATGGTACAG	ref_3730_missing	30	42	45	26	57	35	67	33	64	32
TATTAAATATCTTCGA	ref_3730_missing	13	26	16	10	15	13	19	15	8	21
TCGATTTTCAGCCGTT	ref_3730_missing	54	59	59	40	60	31	64	41	92	36
ATGACCTTCCGGTGGG	ref_3730_missing	48	54	46	45	64	40	40	45	64	29
ACTCTGTACGCTCGGG	ref_3730_missing	6	8	4	2	8	2	12	1	9	3
CCGGTAATGAGTTGGA	ref_3730_missing	15	21	23	12	23	13	23	12	32	10
TGGTGTCTTTACGTCT	ref_3730_missing	17	16	19	18	45	17	20	14	28	26
GCACTACAAGATTGCG	ref_3730_missing	4	6	8	1	6	3	5	4	4	6
GTGTCTATTGCTTGTA	ref_3730_missing	4	5	1	1	2	0	4	1	4	0
GTTTTTTAGCTACAGC	ref_3730_missing	0	0	0	0	3	0	0	0	1	1
CTAGGATATATTTGTA	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
CTGTAGCCTCCCGTGT	ref_3730_missing	25	70	28	20	57	24	75	23	61	31
CAACGTTTTACGTAGG	ref_3730_missing	3	10	2	4	10	3	6	5	6	2
TAGGCTTTATTCGCTT	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
TGTCAGATACCAATCA	ref_3730_missing	20	43	48	34	67	37	59	25	79	40
TATCTGGCGCCCGCTT	ref_3730_missing	5	11	4	8	14	9	8	8	8	6
ACTGCTATTTTGAAAC	ref_3730_missing	6	6	14	3	4	2	11	5	6	5
CTTTCGACTGAATGTG	ref_3730_missing	17	25	20	19	28	18	30	13	20	11
TTTATAGTCCTATGAT	alt_3730_missing	28	36	29	24	37	18	32	15	31	22
ACGGACGAGGACGCAT	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
GCTATGGCCCGCCGGG	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
CCTGCTCATAATATAT	ref_3730_missing	14	16	19	15	30	21	24	19	29	18
TCGCTCGTTTCCTCAG	ref_3730_missing	9	10	6	8	11	6	11	7	8	6
GGATTTCTCCTTTACG	ref_3730_missing	4	10	5	7	4	2	5	5	11	3
ACATATGATTGCCCGA	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
TTGTACATAGATTGAA	ref_3730_missing	44	59	55	44	67	29	65	37	83	35
TTATAGACGTTCTTTC	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
CGATTGCGGTAGTAGG	ref_3730_missing	0	0	0	0	0	0	0	0	0	0
GCCAAATAATGAGTAT	ref_1093_upstream	8	3	6	2	7	4	11	4	11	3
CCGTGCTTATGGTTTT	ref_1093_upstream	29	43	32	18	45	19	42	14	45	17
TGTGAAACTCTTCGTG	ref_1093_upstream	21	46	28	18	67	30	46	32	83	21
TGTTACGTAGGATGGG	ref_1093_upstream	10	38	25	22	40	14	42	21	45	23
ATTCTGTCATGGGCAA	ref_1093_upstream	16	14	17	11	29	11	25	9	38	12
ATAGTGACCGGTGAGT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
AGAACTTGCTGGTCCG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCGTCCATAAGTT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TATTATGGTTTTTGGT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGGTATGGTAGAC	ref_1093_upstream	7	18	15	7	13	19	13	8	18	7
GGGCGACCGCGAACTA	ref_1093_upstream	6	14	12	6	17	10	18	6	14	7
CCGCTACCATCAGTGG	ref_1093_upstream	5	29	6	6	23	3	35	4	37	5
AGTGGCTGTTTTCGGA	ref_1093_upstream	12	38	11	16	26	5	30	26	27	13
CGTTCGGAAGGTTCTT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GAATAGGCTTCCATCC	ref_1093_upstream	8	24	10	7	20	8	23	6	13	9
CTTAGTGGTTTCGCGT	ref_1093_upstream	4	16	7	11	23	4	25	8	18	4
CAGCCTGCCGATTCCG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTCCCATTGCGGT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTAGAATATTTG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GACTCGTTTTCCATTG	ref_1093_upstream	31	64	55	26	59	25	76	28	63	30
CTCAAGGCTATCCTAG	ref_1093_upstream	4	13	10	4	15	6	22	5	27	5
ATAAACTTTATTCATC	ref_1093_upstream	2	10	6	4	14	3	14	3	10	3
ACGATTTCCTCCGGCT	ref_1093_upstream	34	73	41	40	69	39	81	29	63	52
AAGTATCGACCATCGG	ref_1093_upstream	7	39	11	15	22	11	33	16	37	22
GGCGACAGCTATTCAA	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GTCAGTTGTCGCGCGT	ref_1093_upstream	4	7	2	0	1	6	8	5	1	3
GTCTCTCTTCTTCTCC	ref_1093_upstream	6	8	4	5	13	7	8	10	8	6
TTCCGCTGGACCATAT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTCGCGTTAACTA	ref_1093_upstream	8	14	5	9	18	10	14	6	10	7
AGCAATTGAGTCGTTA	ref_1093_upstream	4	6	6	0	2	2	3	4	10	2
CATACTTAGTGGCTGG	ref_1093_upstream	13	33	16	15	42	19	31	14	43	9
GCTCTGTGGCCAGTAT	ref_1093_upstream	14	45	11	20	45	14	35	17	34	16
CCCCGCACTACTTTTT	ref_1093_upstream	23	46	20	21	60	16	60	21	55	18
GGTCATCAACGGATTC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCCAAATTGAACG	ref_1093_upstream	21	74	31	22	60	30	72	25	57	25
ATTTAATCTCTGATCG	ref_1093_upstream	10	11	4	4	11	12	11	5	20	8
GTTCGTATATTCCGAT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTGTTTTTTTCTT	ref_1093_upstream	1	5	1	2	4	0	2	1	1	2
ACACTTGGAATACTAC	ref_1093_upstream	24	76	29	26	65	23	75	27	74	24
GCCTCAGTCACAGCTC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCTTGCCTAAGAC	ref_1093_upstream	17	59	16	14	56	18	64	17	71	16
AGAGAACGGAGTTTTG	ref_1093_upstream	13	35	17	9	39	11	45	12	38	13
TGCCAGTATTATGGAT	ref_1093_upstream	7	8	12	2	20	2	13	1	17	7
TGAACTAATATTTCGC	ref_1093_upstream	7	4	6	5	15	11	17	1	13	3
CCATGGTGAATAATTT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CAGGATGTCGATAAAG	ref_1093_upstream	7	20	11	4	21	8	11	4	13	2
CAACTAGCCCGTTGCG	ref_1093_upstream	0	1	0	0	4	0	1	0	3	0
TTTGGCTTGTCAGCAC	ref_1093_upstream	8	24	8	7	23	5	20	7	22	10
GCCGCACTGCCGGGAG	ref_1093_upstream	5	3	3	4	6	3	2	2	2	3
GTGCCGCCCGGGTTCT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGGCAGCTTCTGC	ref_1093_upstream	20	50	38	25	58	20	48	20	72	26
GCACTTTACCAGTACG	ref_1093_upstream	23	50	16	22	41	20	41	14	59	21
GCCGATACGTTCGAAC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
AACTCACGAGAAGCAC	ref_1093_upstream	7	19	14	20	27	9	24	10	27	15
GTCCTTATAGGTGCGG	ref_1093_upstream	13	36	29	17	39	14	26	20	56	16
CTCATTACAAACTTAG	ref_1093_upstream	3	9	8	2	13	3	8	2	6	3
TTCGTGGTAGTTGACT	ref_1093_upstream	19	40	27	21	44	21	51	17	47	10
ATTTTCTCGAATATGG	ref_1093_upstream	2	3	8	0	5	2	6	4	3	3
GGGTTTGTCCTCGCAG	ref_1093_upstream	18	16	20	12	29	13	29	7	33	7
ATGTAGGGTAAGTCCT	ref_1093_upstream	18	71	32	25	64	17	53	15	66	34
CATAACGGACGTCAAT	ref_1093_upstream	26	53	28	26	49	38	59	17	68	19
ATCCAATGCTGTACAC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TTTAATCTAGACCAAT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TAGAAATGTAGACGTC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TGCCAGTTTTAATTCG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTAGGCAAATGAA	ref_1093_upstream	3	4	0	0	4	2	1	0	2	0
AACTGACCAAGTCACA	ref_1093_upstream	94	224	130	106	212	116	242	96	255	79
TTGATCATGCTGTCGT	ref_1093_upstream	8	10	12	6	13	4	18	6	16	5
TCTCCATCGCTGGCCG	ref_1093_upstream	3	19	9	8	10	7	14	3	20	3
GTTTATCAAGCTGTTG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCGTTTTGATCTA	ref_1093_upstream	17	23	20	17	23	9	28	14	28	21
TCATTACACCCCTAGC	ref_1093_upstream	28	93	32	28	97	20	110	23	110	23
TACTGCTTGCGATTAT	ref_1093_upstream	6	17	10	11	22	4	20	11	23	8
CGCGGATTGATTTATG	ref_1093_upstream	20	34	16	35	59	16	40	12	49	17
TCGTTGTCTCCAGGCT	ref_1093_upstream	4	10	3	2	20	4	12	4	12	3
TACTTGTATCTCCGTT	ref_1093_upstream	31	83	49	42	92	39	90	37	104	36
GCTCATTGAGCGACAT	ref_1093_upstream	130	251	143	153	282	115	279	120	246	120
TACGCTGTTGCGCGCC	ref_1093_upstream	22	45	41	28	48	25	51	28	60	23
GAGGAGGGAAGATATT	ref_1093_upstream	7	4	13	6	21	9	17	7	14	6
GTAGTCAGTTCTTACA	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTTTCTACGTCGC	ref_1093_upstream	43	65	47	42	94	32	90	32	90	26
TCATGTAGGTCACAAC	ref_1093_upstream	75	206	98	83	197	102	184	67	212	83
CTTCATGCTGTGCCGC	ref_1093_upstream	116	220	144	96	228	122	217	108	280	120
CCTTCCCCGCTGGCCT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGTGACCCGCTAT	ref_1093_upstream	1	4	1	5	5	4	6	5	5	4
TTGCCTTCGATGCACT	ref_1093_upstream	5	12	4	8	12	6	10	4	12	1
GGTTCTTGCTGGAGTT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTAAGCTTTCGGT	ref_1093_upstream	19	54	25	23	52	20	65	24	52	21
GTTCCAATGGTCGTGG	ref_1093_upstream	7	10	3	4	13	2	14	5	8	5
CAATGACTGGCAGGAG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GAGGATAACGGTCTTT	ref_1093_upstream	10	28	11	12	29	7	19	7	23	8
TCAACTTTGAAGTCTG	ref_1093_upstream	9	48	18	16	49	15	56	12	45	12
TCCAAGTCTGGTATCG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TATAGTGTGTGGACGG	ref_1093_upstream	35	62	37	26	59	30	64	33	61	26
TAAATTTTTTCATTCG	ref_1093_upstream	9	15	10	5	17	3	20	9	14	11
ATTGTTGGCACCAGCG	ref_1093_upstream	32	45	23	22	36	14	46	20	68	15
TCGGGTATTTCACACC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
AATGTACTACCCCGTA	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
ACGGAGTGGAGTTGCG	ref_1093_upstream	20	41	18	18	32	12	36	19	34	16
AGGATTACCTCGAGGA	ref_1093_upstream	11	25	19	15	23	26	31	11	21	15
ACGTGCACCGCTATTC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TATACCGTATTCACGT	ref_1093_upstream	8	16	7	7	14	5	12	10	22	11
GCTTTCCGCACAGTTT	ref_1093_upstream	4	23	5	4	18	7	14	7	18	5
TTTAAGTAACCAAGGA	ref_1093_upstream	37	50	22	21	58	22	50	27	61	31
GCCTATTCGCACCACT	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GCACCTCGATATATGA	ref_1093_upstream	14	42	27	19	49	24	52	21	51	17
CGCTGTTTACTCATCA	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCGGTACCCAGAG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GCTAAATCGATTTGCG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGACAAATATGTC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
ACACTTAGATTAACTC	ref_1093_upstream	0	0	0	0	0	0	1	0	0	0
TATATCATTGGCCTGC	ref_1093_upstream	18	36	16	19	53	29	36	17	52	18
CAGGCACAGATTCGGT	ref_1093_upstream	16	50	22	13	39	18	59	14	45	9
CCGCTTATTTGGTCTC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CACCTCTTAAAGTTGT	ref_1093_upstream	10	26	9	13	27	11	23	12	27	6
GACGCCCGGTGAACGG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGCCCTCGGTCTA	ref_1093_upstream	43	93	52	45	107	33	114	45	126	49
CCGGCACCTGCGCTAG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTTACTAGGACGG	ref_1093_upstream	0	8	4	3	15	3	4	4	5	5
CCTCACAAAGTTCGTC	ref_1093_upstream	7	26	9	10	31	10	18	11	17	8
GATCTTTACAGGTGTC	ref_1093_upstream	14	48	27	14	28	18	26	13	32	13
CGTTTCTTGGCGTATG	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCGGGAAAAGCTC	ref_1093_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTGGTCTTTGGAA	ref_1093_upstream	5	7	2	3	4	2	3	3	7	1
CAACGTTATACAATTC	ref_1093_upstream	34	102	33	37	99	31	95	37	95	50
GAATCTAAAGATAGCA	ref_1093_upstream	24	37	24	27	32	21	46	19	45	19
TGGATCTATCTGGATC	ref_1093_upstream	6	4	8	4	6	0	10	5	11	2
TCCCCCCTAGCTTACA	alt_2913_reverse	55	34	46	53	36	54	32	42	30	39
ATATCTGTGGCGAGGT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGCTGCGTTTGTT	alt_2913_reverse	41	24	32	24	33	22	40	27	34	23
GAGTTCCGCAGCATGC	alt_2913_reverse	14	11	21	17	7	11	9	15	13	8
ATGATCGAAATCTGTC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
TGAAATGCTTGAGTTA	alt_2913_reverse	68	79	79	50	61	56	90	53	82	41
CGGGTCCCAGTCGATT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCAATCTCCGTTT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGGGAGTCCTCT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGATTATCAGGCA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CATGTGGAGACTTGTA	alt_2913_reverse	159	119	181	134	117	143	110	134	136	127
CGAATTCCACCGGGTA	alt_2913_reverse	14	17	15	8	11	11	13	6	10	5
TAGTAGGTTCTGAGTT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
TACCTCGTCTTTATAT	alt_2913_reverse	11	4	5	2	11	4	5	5	11	9
AGCTAATAGAGAACCG	alt_2913_reverse	43	33	52	41	31	29	40	32	38	38
CGGTGTTGAGTTCATC	alt_2913_reverse	148	112	141	92	89	129	106	99	81	73
AAAGCTCTACCTACCG	alt_2913_reverse	16	39	17	18	38	15	19	8	32	19
TCGGCCACACCCGCAT	alt_2913_reverse	29	39	41	31	51	35	54	37	50	21
GTAACAGTTGTGCTTG	alt_2913_reverse	34	24	31	30	27	25	21	30	33	24
ACACTGTAATTGACAA	alt_2913_reverse	118	109	131	127	107	95	96	103	80	84
TGGAAGCTGGGAGGCT	alt_2913_reverse	33	21	34	20	17	30	24	29	13	25
ATGCTGTGTAAGAACG	alt_2913_reverse	49	57	89	54	55	51	83	67	55	50
GTGGCAAGCATCAGGA	alt_2913_reverse	14	5	11	12	7	14	15	9	7	9
TGAAGTAAGGCGATTT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
ATTATTTTTGTCCGGT	alt_2913_reverse	15	20	19	27	15	17	29	18	34	27
CCACCGCAGTTATTCC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CGCATTGTTTCTATTG	alt_2913_reverse	18	15	18	25	18	20	11	9	14	15
CGGTGTGTCCTATCCA	alt_2913_reverse	31	30	36	29	26	33	27	27	27	24
ACCCATCAAGCTGACC	alt_2913_reverse	36	35	48	31	37	39	31	28	41	25
TGGTATTAGCGGTGCC	alt_2913_reverse	33	48	48	43	44	55	36	39	42	34
CGAAACCGGCTTAATC	alt_2913_reverse	9	9	12	8	8	7	6	5	7	8
TTAGTTAGCCATTATA	alt_2913_reverse	1	1	4	7	3	3	3	4	4	1
TTCCAGGAGTCCTTGA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
GACCTTTATTGGGTCT	alt_2913_reverse	35	22	32	29	32	18	35	20	38	24
GATAGGGTTCCCAAGA	alt_2913_reverse	5	12	20	7	14	10	15	10	9	7
TTTCATTATTCGAACA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
GAGCAGGGACTCAGTG	alt_2913_reverse	276	222	346	264	241	299	261	262	270	248
AGCACACATAGACAAT	alt_2913_reverse	23	28	29	32	31	25	32	29	33	26
ATCTCCTCCTAGGGGA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CAGTAGTTGGCCCTGC	alt_2913_reverse	41	32	51	40	40	41	24	30	35	34
TATGGCGATTGAGGCC	alt_2913_reverse	24	32	24	26	14	24	35	19	26	26
ACGCTCACTTTTGACT	alt_2913_reverse	125	93	149	109	133	150	110	111	112	95
ATCACTCGACATGCTC	alt_2913_reverse	145	94	153	134	78	122	85	93	106	116
ATCGCTTCCTACGGTC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGGATGAGGGTCT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTACGTTCTCTAACTT	alt_2913_reverse	75	70	98	64	94	74	81	84	85	73
TGACCAGCAACAAATA	alt_2913_reverse	63	78	83	85	78	49	63	62	101	61
GAATAAGTTAGTCATA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
GGACGCTTCCGCTTCA	alt_2913_reverse	21	13	19	19	15	16	16	20	13	15
AGTTTGCGTTAATCCA	alt_2913_reverse	19	23	33	32	20	21	33	26	20	27
TACGTAAATATTTGTC	alt_2913_reverse	22	18	26	29	11	24	18	31	17	24
CTTTAGCGTATCCTCT	alt_2913_reverse	36	30	52	42	34	43	23	32	34	28
ATCCTATAAGGTAGAC	alt_2913_reverse	24	13	43	23	19	26	26	27	31	28
TATGTGTAACTCCTAT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAAGATAGCTTAC	alt_2913_reverse	46	41	52	44	30	42	51	35	46	37
ATACGCTCCGAGCCTC	alt_2913_reverse	12	15	26	16	20	24	16	18	6	19
GGGGTCGTTTGCATCA	alt_2913_reverse	32	26	40	42	18	37	26	34	34	29
GGTGCTGTCGGGTGTG	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
TTACCACTTGGCATAC	alt_2913_reverse	22	16	22	15	25	21	13	17	22	13
GCTATCTGGAATTGCT	alt_2913_reverse	132	142	162	127	133	108	132	130	143	120
TACAACATTATAGCCT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAATCTGGGGTTT	alt_2913_reverse	42	30	47	50	37	43	42	43	44	46
TTTCATTTTTCGAACA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTTACCCTTAACTCTG	alt_2913_reverse	35	52	45	48	44	39	44	28	44	27
CGTCCAGTAGTTCCAA	alt_2913_reverse	94	98	104	100	94	97	99	103	113	80
TGTATCAGCTGTCCAT	alt_2913_reverse	185	177	210	188	184	144	159	144	171	158
AGTGCACCTATAACTT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCCTCGAAGGAGC	alt_2913_reverse	17	19	19	22	21	21	35	24	23	15
GCGGAGTCCCGTCGAC	alt_2913_reverse	9	7	11	11	7	10	15	11	11	6
GGGTGTCTCGGCCTTA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGGTGCTCTATGG	alt_2913_reverse	13	12	23	14	6	19	14	7	7	16
GGGATAATAATTTCGC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGCTCATCTTAGG	alt_2913_reverse	33	16	40	36	36	33	32	34	36	34
CAGAGAACATACCAAG	alt_2913_reverse	6	5	5	15	5	5	4	3	6	7
TTTGGATTTTCCGATG	alt_2913_reverse	21	18	20	21	15	18	16	26	17	15
CATCTTGTATCTCGGT	alt_2913_reverse	9	6	8	8	6	4	7	11	10	5
CGTTTACCGCGTTGTA	alt_2913_reverse	8	9	11	10	5	9	14	10	9	16
AGGCTGGCATCCATGT	alt_2913_reverse	52	30	62	61	32	46	41	38	39	46
TAAGCCTTAATGTCGA	alt_2913_reverse	27	24	34	29	20	26	23	19	15	28
TAGCACACGCAGTTGT	alt_2913_reverse	12	14	24	22	23	16	19	14	20	17
GTCACATCTTTCGCTC	alt_2913_reverse	34	16	35	40	26	24	29	32	26	27
TCGTTCCTTGCCGTCA	alt_2913_reverse	27	27	16	13	18	29	26	22	16	9
AATCTCGAAATCAGTT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGTCCGGCTCTTA	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGCATGCTAAACT	alt_2913_reverse	84	82	97	77	89	86	107	75	118	72
ATGCTTGCGGGCCCAT	alt_2913_reverse	18	16	24	21	12	20	23	20	16	25
ACGACCTCTAGAACAG	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGCCCAGAGAGGC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
ATACCTCAAGTTTTGT	alt_2913_reverse	74	62	86	93	71	74	83	63	81	69
TCACTATCGCGTCCTC	alt_2913_reverse	123	101	128	112	97	89	107	97	122	88
TTACCACGAGTCCTTA	alt_2913_reverse	40	28	30	35	35	30	33	30	27	31
AAGAACAACCAATCGT	alt_2913_reverse	3	9	13	8	11	9	7	9	7	14
TTTAGCGTTAGGGTTG	alt_2913_reverse	49	41	58	61	43	44	45	38	48	36
CATAGCGTATTTGGCA	alt_2913_reverse	16	10	19	3	9	21	10	17	9	10
TGTCTCCCCGTTTTGC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
GGGTATTCGACCTCTT	alt_2913_reverse	34	31	57	42	31	37	46	31	31	28
TACGATTATATCATCT	alt_2913_reverse	16	16	23	14	7	25	12	26	15	12
CGCATCAGAATCAGGT	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
GATGGCCTTAGACGAT	alt_2913_reverse	10	22	38	25	22	21	20	20	15	23
TGCGTCTGAATATCCC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
ATCACGTACTTTGATC	alt_2913_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAGCTGGGATCTC	alt_2913_reverse	11	16	17	15	10	11	11	10	15	8
CTGCGAATACTTAGCT	alt_2913_reverse	4	2	11	3	8	5	6	1	7	5
TAGGTGCCGCTCAGGA	alt_2913_reverse	10	16	20	11	14	14	15	10	11	8
CCGTAGGTAATTCACT	alt_2913_reverse	17	16	30	16	10	15	17	26	14	20
GTTCACGTGTTTAAGT	alt_2913_reverse	29	53	56	30	54	29	42	35	58	30
ATTTCGTTGTGTCACA	alt_2913_reverse	90	66	80	52	66	67	72	61	58	83
TTTACCAGTGTGGAGT	ref_5717_new	9	8	7	14	13	4	14	4	13	9
ATAGTTTGGTTTCTCT	ref_5717_new	9	6	7	7	8	5	13	6	11	3
CACCTCGGGTAGTTAG	ref_5717_new	4	6	8	8	10	10	9	6	10	4
CCCTGACTCGGTAACG	ref_5717_new	121	233	155	127	235	116	216	120	217	87
CTGGACACGATTGCCT	ref_5717_new	95	178	119	94	174	113	210	89	212	101
CTCTTTACATTCTTGA	ref_5717_new	23	30	33	22	48	19	30	23	33	19
CTTTGCAAACAGTACG	ref_5717_new	0	0	0	0	0	0	0	0	0	0
AATCATCAGAATACTA	ref_5717_new	38	68	43	45	54	44	66	40	72	43
CCGTACATCTATGGAG	ref_5717_new	89	79	109	80	93	76	105	72	105	74
GATTGTATTTTCATTA	ref_5717_new	89	118	105	98	117	76	120	75	110	74
TGTCCGAGCTACTCAA	ref_5717_new	15	15	24	22	26	12	26	19	26	14
GGTAAACTAGCTATTC	ref_5717_new	0	0	0	0	0	0	0	0	0	0
ATAACGTAGGTTTTTA	ref_5717_new	27	38	44	27	56	38	55	33	60	28
CCCTATGATTCGTTAG	ref_5717_new	31	76	46	35	72	33	72	40	83	31
CAAACACGGGAGGTCG	ref_5717_new	0	0	0	0	0	0	0	0	0	0
TGAGCAATCGCCCAGA	ref_5717_new	39	41	48	37	48	33	42	31	60	39
TAACGATTTCTCGAAC	ref_5717_new	26	32	19	19	32	14	26	15	24	16
TCCCATTCTCTCCTGC	ref_5717_new	5	7	7	5	17	7	11	9	11	2
GATACAGAGTCGCATT	ref_5717_new	2	2	2	0	5	0	4	4	3	3
TATTTGAGTGCTTACG	ref_5717_new	0	0	0	0	0	0	0	0	0	0
GGGAGAACTCATTAAG	ref_5717_new	60	103	95	68	101	65	101	75	109	56
TACATATGAACTGTAC	ref_5717_new	16	35	21	14	29	21	25	16	43	27
CACACCTGGCCGTTGG	ref_5717_new	88	137	95	82	150	87	150	74	149	75
TGTCTGTTTTCTAAGA	ref_5717_new	0	0	0	0	0	0	0	0	0	0
ATTTTGTCTTTAGACA	ref_5717_new	34	57	67	31	73	41	67	35	79	33
CTCGTAAACGGCACCG	ref_5717_new	14	14	13	17	11	3	21	9	13	2
TTGTAGCGGGTCTGCA	ref_5717_new	19	39	37	30	47	28	39	17	42	19
CTTTGAATTCTTTCTC	ref_5717_new	0	0	0	0	0	0	0	0	0	0
ATGGTTTAACGCACAG	ref_5717_new	30	36	37	26	64	19	40	22	38	34
CCTTGCCACGCAAATC	ref_5717_new	3	6	3	2	1	3	8	0	0	0
ATGCTCTGGGAACCTG	ref_5717_new	9	14	3	12	28	6	18	9	12	8
ATGGGTGCTTTGCATA	ref_5717_new	1	4	3	3	6	2	8	4	2	4
TTTCCTCATTAACTAG	ref_5717_new	24	28	17	25	25	18	27	20	34	19
TCATCGTGACCATGTA	ref_5717_new	41	79	71	64	90	37	96	46	85	44
CTATTGATCATTTGAA	ref_5717_new	86	103	63	67	97	65	115	53	91	68
CATTTATTCATTGAGC	ref_5717_new	188	271	206	175	285	183	282	165	260	181
TTAGCGGTATCAGGTA	ref_5717_new	51	90	60	49	98	70	103	54	102	53
CTGTTAACCCCTCGGT	ref_5717_new	0	0	0	0	0	0	0	0	0	0
AGGAACACTTCTGTTT	ref_5717_new	21	34	34	27	40	30	16	12	19	16
TCCACGGTCGACCCAT	ref_5717_new	20	30	21	15	35	25	33	12	31	13
GAGGCTGTGATGTTCG	ref_5717_new	0	0	0	0	0	0	0	0	0	0
TTTCGACCTGGGAATG	ref_5717_new	73	81	90	68	89	58	87	56	111	71
GACACGACAGGATGAA	ref_5717_new	54	74	82	59	84	59	82	82	81	53
ACTCGAACAGTACTCC	ref_5717_new	94	311	142	121	303	106	287	101	339	94
AACCGTTGCGCAGTAA	ref_5717_new	13	29	22	19	22	11	29	23	25	16
TGGAATCTAAAGTTAA	ref_5717_new	55	81	56	69	88	50	99	45	61	42
ACCGGGTGCAATTATC	ref_5717_new	16	31	35	21	50	30	41	18	45	27
CTTTGAAGTAGCTAGG	ref_5717_new	40	55	57	47	57	53	51	34	51	40
TTTCAATCCGCTATAA	ref_5717_new	16	24	26	20	26	17	37	17	25	20
GCGCCTACGGTAGAGA	ref_5717_new	0	0	0	0	0	0	0	0	0	0
TTTAACATAATCAGTA	ref_5717_new	4	11	7	6	9	6	14	10	16	2
TAGTGCCAAAAGGTAC	ref_5717_new	11	16	13	12	22	7	25	14	20	7
TGTGTTACGGAGGACT	ref_5717_new	86	121	114	77	114	75	146	89	128	79
TCAGTCTTGCAGCCAT	ref_5717_new	0	0	0	0	0	0	0	0	0	0
TGTAGGCTATTTGTGT	ref_5717_new	12	14	8	8	7	10	23	9	18	9
ACTGGGGTTATTGCGA	ref_5717_new	15	43	29	39	31	20	46	18	32	16
CAGCAACCGATTGTAA	ref_5717_new	75	99	71	54	126	54	109	48	122	45
CTTCATCATGTATGAC	ref_5717_new	12	24	15	6	17	13	16	11	21	10
GGCCTTTCATTAAAAT	ref_5717_new	47	81	66	60	77	56	69	56	88	46
CTACAACATACCTTGC	ref_5717_new	7	23	4	12	42	7	15	3	25	4
GATAACTATGTTTTTG	ref_5717_new	21	28	25	28	38	30	44	24	50	20
TTATACTCCAGTACAC	ref_5717_new	6	19	18	10	23	18	22	16	19	8
TGTGTGCTGTACAGCG	ref_5717_new	0	0	0	0	0	0	0	0	0	0
ATATAGCCTGGACTTG	ref_5717_new	221	331	258	181	351	172	320	196	357	169
GTCGTGAAAAATTCGC	ref_5717_new	0	0	0	0	0	0	0	0	0	0
CAGCGGAATCGTGTCT	ref_5717_new	8	4	5	10	13	6	15	5	10	3
CTACATTGGTTGAAGT	ref_5717_new	0	0	0	0	0	0	0	0	0	0
CAACGATCTCTCGGAG	ref_5717_new	98	133	100	99	136	92	118	80	131	72
ATTTGTCGTAGCCCTG	ref_5717_new	27	41	31	23	40	29	54	29	57	20
GGAGTGTTCAGGTTTC	alt_2558_RC	10	26	22	15	30	10	29	5	22	14
GCGACTCTGAGGCAAA	alt_2558_RC	3	7	3	2	4	1	3	4	10	1
TTACTATCCCCCAGAC	alt_2558_RC	42	61	44	44	65	33	74	19	71	25
CGCATTCCATATTTAC	alt_2558_RC	16	38	28	8	34	18	18	26	26	11
CCCGTGCCCCTTCGCA	alt_2558_RC	8	20	12	6	11	9	25	9	39	11
ACACGCGCCCCCTTTT	alt_2558_RC	15	27	16	12	27	14	33	13	35	15
AGTTTATCGTATTGGA	alt_2558_RC	1	2	0	0	1	1	1	1	7	0
ATCGCTTATTAGTGGG	alt_2558_RC	14	21	19	9	38	18	31	15	29	16
GCGTGGTACATGTATA	alt_2558_RC	63	112	54	55	114	53	125	47	134	47
CTCTATTAGAAGAGGC	alt_2558_RC	157	251	172	170	314	156	344	133	315	138
GGATGTGTGTTAGTTA	alt_2558_RC	1	8	3	5	7	5	11	6	6	3
GACAACCCCCTTTAAA	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
ATGAATGGGGTGGCTC	alt_2558_RC	156	243	175	135	254	164	291	132	257	127
TGAAGCTTAGCCTGGT	alt_2558_RC	67	198	114	76	161	95	163	76	169	96
TCGTCTGCGACGCCAC	alt_2558_RC	12	5	9	7	8	6	11	2	10	1
TTTACCGTGCGTCAAG	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
CGTTTGAAGCAGCTGT	alt_2558_RC	9	25	16	8	28	6	31	8	24	15
ACTCCGGCCGGTGATA	alt_2558_RC	118	357	138	128	387	102	335	108	365	116
TGGCCCTGAGCAGCGC	alt_2558_RC	26	60	39	33	52	33	47	27	57	34
ATTCGATGCCCTTTGA	alt_2558_RC	42	64	45	47	78	42	92	28	93	47
AACCACGTGGTGTCAA	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
CATAGGTCTCGTCGCC	alt_2558_RC	5	7	5	5	2	3	4	3	9	1
ACTATGCCGCGCCTTA	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGACCGGCAAGA	alt_2558_RC	2	11	9	3	2	1	3	3	0	0
CTTTGATCTTATATAT	alt_2558_RC	7	17	7	7	23	12	18	7	20	8
CTCTGTTCCGGGATTA	alt_2558_RC	17	29	13	10	29	18	41	11	39	12
GTTTACTTGTCACTTG	alt_2558_RC	14	24	12	12	39	13	35	14	36	11
TTTGATCAGGTTGATC	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
CATACTTCCAGGGCGT	alt_2558_RC	3	2	8	10	11	4	11	6	15	3
TACCACTTGGGTGCTT	alt_2558_RC	30	8	45	44	17	41	21	27	22	37
GTCAAAAGTGCACCAA	alt_2558_RC	16	21	16	15	22	18	23	7	29	10
CCGTGAAGAGTGATTT	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
GTTTTTCTATCGGTTA	alt_2558_RC	23	51	30	22	44	27	43	22	57	16
GGTTAATCGTTAAGTC	alt_2558_RC	37	69	43	36	89	32	86	32	72	39
TACTGCTACAGCCCTC	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
CCTGGGTAGGTCTATG	alt_2558_RC	23	45	23	15	34	17	45	21	48	15
TAGACCCCAGTTTCGC	alt_2558_RC	9	21	10	20	18	5	25	6	18	15
GAAATTCTGAGTATGC	alt_2558_RC	3	7	3	2	1	4	6	5	4	1
TTCTTGAGCCATCGCC	alt_2558_RC	15	39	21	27	52	23	40	28	47	31
GTTATTCCCTGTAATA	alt_2558_RC	19	35	16	23	36	16	30	19	27	15
GAGTTGCGTGTTCCTG	alt_2558_RC	39	73	39	30	63	34	62	24	87	35
ACGGCTGCCTCCAGGT	alt_2558_RC	5	7	8	4	11	13	13	5	19	4
TTATATGCCCGATTGG	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
CAGCTTATTCTCCTAT	ref_2558_RC	6	55	7	7	39	8	43	6	53	1
CAGCTTCATGGCATAT	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
GTAACGTGTTCGACTT	alt_2558_RC	0	3	2	0	5	1	4	0	0	1
ATTCAATGAACTACTC	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
GGAACGCGGGAATGAC	alt_2558_RC	168	233	159	156	270	161	239	136	299	170
ACCCTGCACCCCGGTA	alt_2558_RC	8	16	9	17	25	14	22	5	19	17
GTAGACTATTCATGAT	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
TGTTGCCACGCGCTTC	alt_2558_RC	5	10	5	3	5	4	8	2	7	3
TACTCCTTTGCTCTCT	alt_2558_RC	41	69	58	58	94	32	103	47	95	30
TCATTCTTTCCATTTT	alt_2558_RC	7	15	7	3	8	7	10	4	4	8
TGGCGACTTCGGAATA	ref_2558_RC	71	109	70	77	142	71	121	72	138	62
TATGATGCCCCACCTT	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
ACTTGGTCGTTTCGGA	ref_2558_RC	25	47	37	31	49	18	47	22	27	27
CGTAGGGTATCGCATC	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
GCTCGTGCATTGGTTC	alt_2558_RC	6	8	3	1	7	4	4	4	5	5
GCTTTTTAGCAACCAG	alt_2558_RC	16	35	21	16	33	16	28	12	33	11
ATGTCTCCGCCATTCC	alt_2558_RC	0	0	0	0	0	0	0	0	0	0
TCGTAGCTTGTTCAGG	ref_854_upstream	24	22	20	33	26	23	26	23	23	16
TCAGGAATCTCGAATT	ref_854_upstream	28	34	39	26	51	31	35	15	46	23
TTTTCAAGCCGATTCA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
ATTCACTCTATGGTAA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCCGGATGTTTCG	ref_854_upstream	61	49	52	36	80	53	79	37	60	37
TGGTCGGTCGAGTACA	ref_854_upstream	23	21	13	8	11	6	22	11	20	9
CCCAGTCACCATAGGG	ref_854_upstream	10	15	9	6	9	7	15	10	14	3
ATAACATTAGGCACTC	ref_854_upstream	27	23	23	28	41	31	38	20	43	30
GCAGCTAGGGGCACGA	ref_854_upstream	21	23	29	19	36	18	32	19	37	18
TCACATTCGCTTTCAC	ref_854_upstream	32	74	54	24	60	35	57	29	52	40
GTCCCGTCGGCAACAT	ref_854_upstream	19	66	31	29	60	27	48	28	60	23
TTTATTGCGTTTGTTC	ref_854_upstream	12	31	22	23	26	26	36	11	31	12
ATGTTCATCGTTGTCA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTTCCCGGTGTGG	ref_854_upstream	1	10	7	2	10	4	11	2	6	1
GCCGGTTCGGGTATTT	ref_854_upstream	5	25	3	4	29	6	24	2	27	4
TGATCTTAACCGATTT	ref_854_upstream	60	61	65	55	95	58	71	51	90	65
GACACTTACTCAAGCC	ref_854_upstream	13	28	10	10	14	12	26	10	32	11
AATTTTCGTGCCCGGA	ref_854_upstream	10	11	24	8	8	12	19	6	9	8
TAACCAGAAGTCACAT	ref_854_upstream	17	30	12	16	18	14	31	11	26	16
GTATATAACTCTAGTG	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
AGCGGGCTCCTGCCCC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCATACTTAAATT	alt_854_upstream	28	54	45	33	48	26	62	25	47	35
CCGTACGTACTGAGAT	ref_854_upstream	11	19	15	13	12	16	32	18	29	6
CGACACGATATTCACA	ref_854_upstream	11	28	16	14	22	7	25	18	34	17
TCCTAGATCGCTCATG	ref_854_upstream	3	18	4	4	10	6	11	5	8	3
TATATGCACTTGGTTT	ref_854_upstream	40	107	66	34	113	39	104	41	104	41
TACATTTTAAATCTAA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
GATCGCCCACTGTGTA	ref_854_upstream	3	7	5	4	7	6	3	2	8	3
ACTTTGATTTGGTGCT	ref_854_upstream	8	11	8	4	10	2	11	3	11	4
TTACGAAGTATTCGTA	ref_854_upstream	6	13	13	5	15	9	21	7	17	7
CCGTGATTCCCGTACT	ref_854_upstream	45	243	52	39	226	44	223	54	227	44
CTTGTCTGCGCGCTGC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
GTTACCGGTTGCATAG	ref_854_upstream	27	36	33	36	36	18	35	12	54	19
CGACGGATGGCCCAGC	ref_854_upstream	5	3	1	7	4	7	11	4	9	5
GGACCATCAGCACAAA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
AACTTTGATCTACTCT	ref_854_upstream	16	27	19	21	20	11	16	10	26	17
CAACGCTGAAGGGTGT	ref_854_upstream	35	61	47	51	70	42	54	43	82	32
GCTGAACCTCAGCGCG	ref_854_upstream	8	3	9	2	13	9	8	1	6	4
ACAGAGGTCACAACTG	ref_854_upstream	38	48	45	22	48	27	42	20	57	22
CTCTCCTTCCGAACAG	ref_854_upstream	6	20	10	5	15	4	6	7	11	3
GCGATGAATTTTTTCT	ref_854_upstream	1	7	3	1	12	9	7	7	6	4
TCCGCCCCTCTCCGGT	ref_854_upstream	20	50	30	33	27	29	42	24	45	24
TGTGCTATGCACAAGC	ref_854_upstream	15	28	24	14	23	11	19	16	26	11
ATTCGGCACGAACCCT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
ATCATGATTCCGATTC	ref_854_upstream	75	98	87	75	122	97	112	71	138	71
CTTCAGGACATGTATT	ref_854_upstream	13	5	10	14	17	8	16	8	15	5
CAACAGAAAATTTTGC	ref_854_upstream	24	31	21	19	30	23	31	17	19	18
AAAGGGGCGTTCAGTC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TACAAACGACCATGTT	ref_854_upstream	46	70	51	51	89	49	64	41	68	41
CCCTTGTATTTTTAAC	ref_854_upstream	30	92	43	34	88	47	127	27	97	30
GGTGCTATGGCTAATA	ref_854_upstream	36	59	35	22	38	25	43	18	56	24
GCGACCGCCTAGCCTG	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
AGGTATTGTCGCGCGG	ref_854_upstream	15	31	13	22	16	14	34	9	25	16
CATTAGTATTGGCCCC	ref_854_upstream	37	58	37	37	64	31	64	35	47	24
CATTGCATTCTATCGG	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCTGCAGCTACTT	ref_854_upstream	43	79	33	47	77	40	79	33	60	45
TGACATCTTCGTTAAC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
GTAGCTCTAGACAGCA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
CACCCCGCTAATCGTA	ref_854_upstream	22	36	18	17	50	17	49	17	47	24
CCGGGCATATATGTAA	ref_854_upstream	35	41	37	31	39	30	41	34	51	21
GGGCTCGAACTCAAGC	ref_854_upstream	72	103	76	57	84	50	89	55	99	60
GCAAACATACATTAGC	ref_854_upstream	111	147	106	83	140	115	161	81	144	88
TGTAGCCAAACTTACT	ref_854_upstream	11	20	15	13	19	15	18	15	19	10
CCAGCCCATCCAGTCC	ref_854_upstream	3	7	6	1	12	1	10	0	12	1
ACTCTCTCACAATGTT	ref_854_upstream	22	28	20	18	31	27	24	20	27	18
GCCGCATTGCTTAGCA	ref_854_upstream	38	75	70	51	81	55	78	42	78	50
ATCGATAAAGTTAATA	ref_854_upstream	57	77	51	42	79	62	89	54	72	62
TTTACGCCAGCTGGCC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGAGTTCTAGATT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTAGGACAGTTCC	ref_854_upstream	28	45	32	22	36	28	47	16	54	22
AAAGATCTGCAGGTAT	alt_854_upstream	8	5	10	5	18	4	13	6	10	2
TGCTCCTTCACATAGT	ref_854_upstream	6	18	10	8	9	5	13	2	14	5
CCATGGCACGTCGGTC	ref_854_upstream	45	72	71	44	67	49	77	48	73	29
CACTCTGGAAAGAGGC	ref_854_upstream	0	4	1	1	2	1	3	0	3	0
GCCTTTAGTACCTTCA	ref_854_upstream	29	42	41	31	46	25	45	14	56	30
ACTTGTATCGAAGGTA	ref_854_upstream	4	4	9	2	6	9	12	6	8	3
TCATCAACTATGCTAT	ref_854_upstream	7	3	10	5	11	4	12	3	10	5
CTAAACTTTTCTCAGT	ref_854_upstream	6	13	10	6	6	13	18	12	14	6
ACCTCAGTTTCTTACA	ref_854_upstream	137	219	169	137	240	134	269	113	264	121
ATTTCAAGGATCCTAA	ref_854_upstream	22	33	33	23	59	34	35	27	34	19
AGTTTGGCCCTAGTGA	ref_854_upstream	10	26	27	16	18	16	21	17	37	14
TTATGGGACGGACGGC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
AGCGATGCAGAGCACG	ref_854_upstream	17	19	21	11	16	15	19	11	22	17
TTTAATAGAGTTCACC	ref_854_upstream	6	10	9	8	6	5	12	8	18	2
GACTCGCAGCTGTTTA	ref_854_upstream	9	18	14	11	22	9	20	16	22	9
CACACTTATCTCGTAT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
CATGGGGGGATCATAG	ref_854_upstream	17	24	15	16	18	22	22	9	26	13
CAAAAGGTTCATTCAC	ref_854_upstream	8	18	10	13	14	12	15	4	17	6
CAAAGGATGCAGCCGG	ref_854_upstream	50	59	50	36	70	36	70	52	64	31
CTCTTGCAGGATTTTC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCTCGGCGTGTT	ref_854_upstream	43	78	60	37	76	50	70	40	79	34
CGTGGATACCCATTCG	ref_854_upstream	5	5	5	2	6	2	6	7	5	2
TTAGTTGTTTTCAAGC	ref_854_upstream	63	110	121	96	138	97	142	86	126	93
TCCCGGATATTCGGGG	ref_854_upstream	31	36	28	37	33	29	44	21	39	18
GAGGATGCTGCGTCAC	ref_854_upstream	16	28	29	30	30	15	20	22	32	9
CCCTCACGATTATAAA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTAGATATTTCAC	ref_854_upstream	9	15	9	9	8	9	10	7	20	8
CCATTGTGATGTTTGT	ref_854_upstream	34	41	44	21	52	31	40	32	47	33
GCCTCGGACTAGCATT	ref_854_upstream	11	16	6	7	11	5	13	8	10	3
AATAGGTCTGTGCTCC	ref_854_upstream	2	7	1	1	10	2	7	4	8	3
CGCCTACTATCTTGTA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGGGCACAGGGAT	ref_854_upstream	29	40	29	23	21	14	43	13	38	22
GGATACAGTATTGGTT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGTAGATTTGTGG	ref_854_upstream	55	62	37	46	64	42	58	46	81	35
GAATGGGATTTTACTT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCGCACTGCCGGG	ref_854_upstream	56	66	75	53	85	54	81	51	63	45
AGTATTCCCGCGTGCC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
GCTTACATGTCGAGTT	ref_854_upstream	18	28	20	14	32	22	36	28	25	15
AAACAAGCGTTGGTCA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TTAATCCGCGCCTAAT	ref_854_upstream	19	29	33	27	39	27	35	19	37	21
TAACTACAGTATTATG	ref_854_upstream	5	6	9	4	4	2	6	2	2	5
AGCCCGTGATCAGATG	ref_854_upstream	7	8	5	10	5	2	9	5	3	0
TACGTCCTGTAATTGC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
AAGATATAGGCCTGAG	ref_854_upstream	1	4	1	0	2	0	0	0	1	0
TGTTAACCCTTGCGGC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TTACCTTCCCGCCGCC	ref_854_upstream	38	30	44	42	44	32	38	29	39	35
TTGCTTTGATCGGCCG	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TGACCGCGTCCTAGGG	alt_854_upstream	45	87	65	51	117	36	135	46	102	49
TTTATATATCCGTACG	ref_854_upstream	36	42	27	29	44	26	38	28	39	26
TATGGAGTAAGCGGGC	ref_854_upstream	16	28	15	18	31	15	36	24	35	26
ATTACTTACTTCGATT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGTGAACGTCATA	ref_854_upstream	24	42	31	18	34	27	49	26	33	19
GTCCAGTGTGGTCGTC	ref_854_upstream	10	24	10	15	38	10	24	7	23	10
TATCTACTGTGTGTAT	ref_854_upstream	1	3	5	3	5	2	1	4	10	0
CCGGTCGGGATTCATT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
CGTAGTGCGTTTTACG	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TACCGCATAGGGTGTT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGTCCATCAAAGG	ref_854_upstream	7	23	10	20	18	10	29	11	22	10
TGGATACCCATAACGG	ref_854_upstream	24	26	29	21	38	18	28	21	33	26
TTGCCCGTAGTCGCAA	ref_854_upstream	44	56	28	38	64	25	58	39	52	41
GGTATTGCTCTAAAGG	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TGATTCGAGTCTGGCA	ref_854_upstream	16	25	20	14	25	15	43	10	23	13
CTGGTAGGTCGCTGAA	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTCCGTCGGATT	ref_854_upstream	19	34	40	35	47	16	50	26	38	28
AATTCTTAAAGATATT	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TCACCTGTACGAAGGC	ref_854_upstream	6	14	8	4	20	3	6	3	5	6
CTTCGTCAGTAATACC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTCCCTTCATCAG	ref_854_upstream	16	25	12	10	14	12	31	15	15	8
ATTTTATTTTTAACGT	ref_854_upstream	11	13	11	8	7	7	15	6	18	7
CTTGGTTCGTTTTAGA	ref_854_upstream	2	6	2	3	15	3	7	3	10	4
TTTTCGTCCGCTCAAC	ref_854_upstream	0	0	0	0	0	0	0	0	0	0
TAGAAGACGCCCGGTC	ref_854_upstream	21	33	27	21	31	18	31	23	43	13
TTGGGGACGAGCTTTG	ref_854_upstream	1	6	1	0	2	3	3	0	3	3
GCCGAGAATGCCCCTA	ref_854_upstream	9	19	10	9	24	10	17	10	20	7
TTCTTCGTTTATATGG	ref_854_upstream	10	24	6	13	21	10	16	7	25	13
TTATGTACTTGTATTG	ref_854_upstream	0	5	2	2	5	3	12	3	3	4
TCGGGGTTAGGTTGAT	ref_854_upstream	3	2	5	1	2	3	5	6	4	6
CATTCCTTGGCAACGC	ref_854_upstream	9	9	8	7	13	8	16	12	9	8
TGTGAAGATCATAGTG	ref_854_upstream	38	78	55	35	61	52	75	38	74	49
CGCCAGAGTGCTGGGA	ref_854_upstream	16	24	18	17	19	13	24	17	16	8
AAGCTTTGTAGTTAAC	ref_854_upstream	19	36	30	14	43	24	36	33	39	16
CTATTAGTCCAGGGCC	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGGCTTATATACG	alt_5486_reverse	51	44	67	58	57	57	59	41	60	47
CTGTATTGGTTTTTAG	alt_5486_reverse	17	11	11	15	14	20	18	20	13	13
AAAAGGTTTCATGGAG	alt_5486_reverse	7	12	21	9	11	12	8	18	13	13
TGCTCGGTAATAGACG	alt_5486_reverse	11	9	14	10	10	7	16	13	15	7
CGTTCCTTCCCTCCGC	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GTGATGTTGATTTATT	alt_5486_reverse	92	65	96	94	56	76	58	83	80	92
AATCAATAGACTCGGA	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCAATCAGCTACT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGTCTGGCGTCCA	alt_5486_reverse	19	11	15	11	18	10	13	10	23	10
GTACATGGTCATGGTT	alt_5486_reverse	24	25	21	18	26	15	29	16	30	20
GTGTCGTATTCGTTAC	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTCGAGTCGTAAA	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
CAGACTCTGTTAGCTG	alt_5486_reverse	35	31	46	41	51	27	35	30	52	20
AATACGTTGTCCGCGG	alt_5486_reverse	10	5	4	8	8	6	4	8	6	7
GCCTTCGGTTTGCTAG	alt_5486_reverse	41	39	35	35	34	34	32	39	37	28
TCTGTCAATACATTAT	alt_5486_reverse	21	21	27	21	22	15	22	19	24	15
GTTTAGTACTTCGGAA	alt_5486_reverse	47	48	47	56	47	41	52	40	45	51
GCGAGATGCTTCTATT	alt_5486_reverse	122	104	129	117	112	88	139	109	121	98
CTGCAGCTCTTTCCCT	alt_5486_reverse	84	92	120	79	86	83	129	89	124	109
TATGCCGGAGTTCAAT	alt_5486_reverse	12	10	11	8	7	3	14	9	12	7
CGCTAACGTCTAATCT	alt_5486_reverse	20	22	20	25	29	19	16	13	23	20
AATCGAATGTCGTATA	alt_5486_reverse	36	47	45	49	38	39	39	32	38	33
CTTCTACTCAAGTTTA	alt_5486_reverse	31	31	47	31	32	30	41	27	53	34
GTTTGTCTAGAACAGT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCTAAGCGCCTG	alt_5486_reverse	0	0	0	1	1	2	0	1	1	1
TGCATCATGCAATCAC	alt_5486_reverse	6	10	18	10	12	17	16	9	18	13
AGAGGGCCAGCACGCT	alt_5486_reverse	304	270	357	335	281	273	292	271	328	246
ATTTTTAATTCTGATA	alt_5486_reverse	7	12	11	10	8	11	6	10	17	15
ATGCCGTGTATTATAC	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTTGTTTGTCCCT	alt_5486_reverse	334	268	390	317	276	265	253	290	282	268
CCGCTAATACTAGATC	alt_5486_reverse	5	9	10	7	6	9	10	7	10	13
ACGTATCTCGAGCTTC	alt_5486_reverse	0	0	0	0	1	1	0	0	1	1
TCCTGTGTGATCGGGG	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
CCGGCAGGAGGGTAAT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGTCCCACGCATT	alt_5486_reverse	91	67	113	97	78	86	68	78	70	68
GACCTACCGACGCATG	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGTTTCATGATAA	alt_5486_reverse	71	82	76	65	65	68	64	62	80	75
GTCCCCTGGCATCTCT	alt_5486_reverse	13	26	23	20	18	27	31	15	38	23
TGTGCATAGAATAATT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCTTCCTGGTTGT	alt_5486_reverse	26	78	33	26	66	37	88	21	90	29
TTGCTCGCCGGTTTAC	alt_5486_reverse	8	15	12	9	24	12	21	13	18	12
GTGCGTACCACCCGTC	alt_5486_reverse	41	63	73	49	65	45	63	38	68	35
GTCCCGTTTGTTGGCT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGCGCACGACGAT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
AGAATTGGTTTGCAGA	alt_5486_reverse	84	99	69	76	71	75	59	73	92	60
TATAGATTGATTCTTC	alt_5486_reverse	79	70	106	82	77	80	67	79	106	75
TTGCTCAGTAAAGTTT	alt_5486_reverse	51	88	87	66	65	60	69	71	69	59
CAGAACTGCCAACGGC	alt_5486_reverse	15	25	8	21	13	17	10	16	22	14
TATGTGAGTATAGTCT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
AATGGCATGGATCATA	alt_5486_reverse	52	46	54	57	42	57	51	53	42	62
TATTTGATGTTCTCAG	alt_5486_reverse	77	82	88	84	102	93	93	84	96	80
TGGTTTCTTTATAATC	alt_5486_reverse	19	35	33	24	35	29	27	20	34	25
AGATTGACTAATATTC	alt_5486_reverse	5	6	12	10	11	9	5	13	14	4
GCAACCACGCACCTCT	alt_5486_reverse	12	15	17	6	9	8	9	11	12	10
GTCCAACACGCATCTT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTGTTGAAGGGCT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TGAGCGTATTCCCTCG	alt_5486_reverse	26	20	29	18	12	21	25	19	38	28
TAGGTCTGGTCCAATG	alt_5486_reverse	25	26	20	36	40	16	24	25	31	23
TTAAGATATCGACGCT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TTACATACTTCGCAGG	alt_5486_reverse	94	76	95	84	68	71	57	76	67	70
AGCAATAGGTCCAGCT	alt_5486_reverse	29	32	32	31	23	23	29	31	30	24
ATTCGTTGCTCGTTGG	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCGAAGCATTAAA	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTGAGGCGCGCTT	alt_5486_reverse	39	32	50	29	38	41	45	48	44	31
AAAACCTAAGCTCCTG	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTGCCCTCGGCTA	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCTGTAAAGCGA	alt_5486_reverse	12	12	18	21	13	12	8	16	9	12
TAGTTCCACGTTAGGG	alt_5486_reverse	54	62	59	83	69	51	73	70	65	54
GGCATGATCAACATTT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGCGGAACCCTCC	alt_5486_reverse	40	33	49	41	57	32	41	43	38	33
CCACTCGAATGGACAA	alt_5486_reverse	35	51	51	36	37	35	45	34	41	30
AATCCGCGCTGTAATC	alt_5486_reverse	51	47	66	29	58	56	53	45	51	49
TAAACCTAAGCTCCTG	alt_5486_reverse	95	83	123	100	80	88	78	78	76	91
GGCACACTGTCAACAC	alt_5486_reverse	25	23	24	27	29	16	31	11	21	32
TTTTCCTGCTAATATG	alt_5486_reverse	38	37	42	42	36	30	41	27	38	45
GCTGCTAGAAGTTTCT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
GACACCGTAAATGATC	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
ACTCAACCTATGTGCA	alt_5486_reverse	15	18	22	21	20	11	33	32	23	11
AGTTGGACATCTTAAA	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
CGAATGCGTATCTGCG	alt_5486_reverse	104	97	121	107	101	86	74	99	87	77
ACTCAGACCAGATGCT	alt_5486_reverse	92	133	108	100	124	101	133	103	114	78
TGTCCTGAGCGTTAAC	alt_5486_reverse	22	25	32	17	38	28	32	14	27	9
TCTAGGAACAGTCTGT	alt_5486_reverse	9	11	11	8	16	6	11	6	13	7
CGTATACCTCCTGGCC	alt_5486_reverse	59	79	55	44	71	38	71	55	97	56
TTGTGGTTTGATGCGA	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGGTCATCAAGTT	alt_5486_reverse	15	7	15	4	6	20	8	12	9	9
GGATATGGAGTCAGTG	alt_5486_reverse	80	81	93	82	52	73	57	59	55	58
CATTTTATACTGTCGA	alt_5486_reverse	4	8	1	3	4	5	5	6	5	6
ATGACTCATTCTAGGC	alt_5486_reverse	57	52	66	81	36	58	39	44	46	52
CGCGCTGCCTTTATCT	alt_5486_reverse	28	28	37	38	48	28	29	35	50	35
GAGCCTATATACACTC	alt_5486_reverse	5	44	6	2	48	6	37	7	50	0
TTTGAACCAGGCAGTT	alt_5486_reverse	21	22	30	25	23	26	29	26	28	27
TACATCCGAACCTGAG	alt_5486_reverse	13	8	25	20	10	15	21	15	21	6
GTTCTATCAGCCGAGG	alt_5486_reverse	16	12	10	19	15	15	13	17	28	7
TTCTACGTCTGTTTGT	alt_5486_reverse	55	26	64	39	57	55	54	57	34	39
ATACTCCTGAGGTTTT	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTTAGGTTTTTT	alt_5486_reverse	6	7	15	9	12	5	11	7	7	6
GCTTATGCCCTATTAC	alt_5486_reverse	7	4	3	9	12	7	9	2	11	3
TCCGCATACGCCTCTA	alt_5486_reverse	30	41	52	38	49	37	68	40	74	38
CCTTATGGGGAGTCTG	alt_5486_reverse	14	12	22	28	25	24	18	26	19	20
CCTTTCTGACGCGGTG	alt_5486_reverse	77	70	75	65	64	66	70	65	64	67
ACGGTGTACAACACTG	alt_5486_reverse	15	14	13	20	10	8	19	12	15	18
ACTGTGCCCCCCTCCT	alt_5486_reverse	44	42	40	37	38	21	34	40	37	33
TAATAAGTCAAAGTTT	alt_5486_reverse	46	28	33	37	39	53	37	27	26	27
TATTAAGTTTTTACGG	alt_5486_reverse	56	71	59	46	57	49	48	47	87	35
GTGGGATTCCTCTGTC	alt_5486_reverse	19	28	17	22	20	22	19	10	21	28
CTCCCCCGAATCCATC	alt_5486_reverse	0	0	0	0	0	0	0	0	0	0
AGAACGATTACCCCCC	alt_5486_reverse	162	241	173	168	251	164	293	165	300	139
TCTAATGTTTTTTGGG	alt_5486_reverse	54	59	57	41	38	35	37	33	60	44
TCTAAGCATCTAATGT	ref_5762_new	0	0	0	0	0	0	0	0	0	0
TTCGAGTAGGCCTATT	ref_5762_new	0	3	0	0	2	2	0	1	1	1
TTAAGGGCTCTTCCTG	ref_5762_new	4	15	8	6	14	7	8	8	9	10
ACTTAATATGGATGAT	ref_5762_new	41	60	47	33	79	45	58	39	59	36
TCAGTGATCGCGGCTA	ref_5762_new	0	0	0	0	0	0	0	0	0	0
AGGTTGGTACCACATT	ref_5762_new	0	0	0	0	0	0	0	0	0	0
TCCTATTAACGGTTCA	ref_5762_new	9	13	4	2	9	11	18	10	18	7
ACACTTTTTCGGATCA	ref_5762_new	21	42	23	18	49	21	39	25	51	17
GCATTGATTTCCCTTC	ref_5762_new	39	75	57	38	75	24	70	43	73	27
TTCACCGATCCCTACA	ref_5762_new	21	44	22	22	63	22	30	23	43	16
GCGAATGGCTAGATCC	ref_5762_new	6	12	5	4	17	4	12	2	11	5
GCAACCAAGGTTACTT	ref_5762_new	1	3	4	3	5	2	10	3	6	2
CTCATTTATTGTAAAG	ref_5762_new	12	34	29	13	52	17	43	14	59	15
TTACGGTGTTTGTGAG	ref_5762_new	0	4	2	5	7	0	5	3	16	0
ACGTCGGCTATCTCTA	alt_5762_new	8	2	4	4	8	3	5	3	10	3
TATGAAGTGATAAATT	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GGGATTAAACGGCTTT	ref_5762_new	10	26	20	9	34	18	25	13	32	21
TGCACGCAACCATCCT	ref_5762_new	14	24	18	13	30	18	29	9	20	7
GTCATTAGGCACAAAG	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GGTAATTCATCGAAGA	ref_5762_new	3	11	2	11	15	9	12	3	18	4
AAATTCGGGGTGTCAC	ref_5762_new	0	0	2	0	0	0	0	0	0	0
ATTCATATTCTTGAGT	ref_5762_new	8	23	10	7	17	9	21	11	25	8
ACGTTCCAATTTGGTA	ref_5762_new	16	25	24	14	35	17	56	14	49	16
CTACAGTCTACACGCT	ref_5762_new	0	0	0	0	0	0	0	0	0	0
CCATTTGTCCGCTCGG	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GCCTTATTAGGCCGCG	ref_5762_new	12	24	24	8	18	10	26	9	23	9
TCGTTCAACCAGTCAA	ref_5762_new	34	73	49	31	71	24	76	29	78	31
AATTGTGTCCTTTGGC	ref_5762_new	30	88	50	34	100	39	86	47	98	31
TAGCCATTATTTGCTG	ref_5762_new	31	68	32	26	83	29	91	46	83	25
CTGCGCTTTGTTCCAC	ref_5762_new	128	215	178	106	239	143	244	105	270	120
TCCGCAGTCAGGGGAC	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GCTCTAAAGTATGTCA	ref_5762_new	23	53	25	27	62	25	65	20	65	21
AGAATACTACTTAGTA	ref_5762_new	19	30	22	15	40	16	45	16	28	13
GGTAATTTTATGTGTT	ref_5762_new	1	11	7	0	10	4	12	4	13	3
GCAGCGGCTGGCCCGC	ref_5762_new	0	0	0	0	0	0	0	0	0	0
ATTTGGGGTTCAAGGA	ref_5762_new	17	11	13	16	25	13	19	9	33	6
TTCCCGAATAATCCAC	ref_5762_new	18	33	19	25	44	23	37	19	26	11
ACGTCTGCCATACCTA	ref_5762_new	14	35	24	22	43	16	37	20	51	20
ATAAAGACTGAATGGT	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GGCTGTGGTAAACCTC	ref_5762_new	73	118	83	71	119	49	132	70	158	73
TGTTCTGTGCCTAGCT	ref_5762_new	26	31	17	15	46	14	34	13	34	12
CGGCTTTATCATCGGC	ref_5762_new	55	133	84	76	135	75	137	91	129	69
GCACACCGTACCGCTG	ref_5762_new	0	0	0	0	0	0	0	0	0	0
TGCCATTTACGCTGAC	ref_5762_new	52	93	67	52	116	54	109	40	133	49
CTCCGAGTGATGCGGA	ref_5762_new	32	76	49	37	65	43	59	24	64	29
TCAGGATATTCGTGAT	alt_5762_new	58	159	99	96	230	82	221	81	190	78
ATAGCCGGTTAGAGGA	ref_5762_new	16	30	11	21	24	11	26	8	29	16
CGTAGGGAAAGTTTTT	ref_5762_new	15	23	10	15	25	9	22	9	37	11
GGCTTCGTTCTCTGGC	ref_5762_new	4	20	16	14	18	12	21	10	22	16
TTGAGCTACAAAAAGA	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GGTTCGGTTTAGGAGA	ref_5762_new	14	41	27	9	30	16	38	13	50	6
AGTTCCTATACTTGGC	ref_5762_new	20	36	14	12	45	12	37	14	31	10
CTGGCGGGCCATACAT	ref_5762_new	8	14	14	3	12	6	15	4	14	8
CGCGGCACCCCTCCCT	alt_5762_new	2	6	3	2	2	1	7	1	9	2
TTCCTGGGCTCGGCCT	ref_5762_new	6	15	12	10	23	12	27	6	16	9
TTTCGTCTAAAAAAAA	ref_5762_new	3	12	3	6	15	8	6	0	5	1
TTATTCTGCTTCTTCG	ref_5762_new	21	45	31	31	31	28	27	26	35	22
CACGTACCATTTCGTG	ref_5762_new	5	22	8	8	19	4	14	14	23	11
GTGCCGAAGGAGGGCT	ref_5762_new	9	13	6	15	17	5	11	8	8	11
GACCGTAGGTTCCCAG	ref_5762_new	0	0	0	0	0	0	0	0	0	0
AATTGGTGGTATAATT	ref_5762_new	7	23	11	8	10	7	11	17	17	7
TGATTTCATTCTCGAT	ref_5762_new	0	0	0	0	0	0	0	0	0	0
CTGATGCTATCTGTTA	alt_5762_new	19	35	22	17	36	24	31	20	46	18
CGTATGTTCCATACGG	ref_5762_new	0	0	0	0	0	0	0	0	0	0
CTGCTCGTTTTGCTAA	ref_5762_new	13	12	7	3	11	3	18	4	17	5
CCTTCTAAGATTACTA	alt_5762_new	39	102	36	25	112	38	102	35	118	32
CAGATGTCCCTAGTCG	ref_5762_new	0	1	1	1	0	1	1	1	0	0
CAGAGCTATAGTTTAC	ref_5762_new	35	56	31	38	73	30	66	32	57	19
TAGTCTTTGCTTGGGA	ref_5762_new	43	90	55	32	66	36	100	24	71	28
TTTCACCGCACAGTCT	ref_5762_new	46	97	70	43	110	59	96	49	120	51
AAGCCGCCACATCGGT	ref_5762_new	14	17	9	18	29	9	23	9	21	6
ATTGGGGCATAACGAG	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GTCTGCCGCGTAACCT	ref_5762_new	11	25	20	13	19	12	23	9	29	14
TCGGCAGGTTTGGTCC	ref_5762_new	0	0	0	0	0	0	0	0	0	0
CGCCGTGCCGTGGTGA	ref_5762_new	32	65	58	39	93	38	82	39	67	54
TTCTTACAGGTTAGTT	ref_5762_new	0	0	0	0	0	0	0	0	0	0
CAATCCACCCGAACAC	ref_5762_new	0	0	0	0	0	0	0	0	0	0
TTCACCTCTTTGCCAA	ref_5762_new	11	29	13	16	36	11	18	9	28	11
GTGTAACCTGGTCGTC	ref_5762_new	20	29	15	17	21	5	21	13	32	12
TTAAGCTACACTGTCA	ref_5762_new	3	3	3	2	2	0	3	2	6	0
ACTCACAACGGGTCAT	ref_5762_new	7	17	7	8	17	9	13	10	13	9
AAATTCTTGTTTTCTT	ref_5762_new	10	14	10	6	15	7	21	2	15	9
TCTGGTGCTAATTTCG	alt_5762_new	28	52	35	29	55	35	64	26	59	21
TTAGGCGCACTCCGGA	ref_5762_new	13	45	26	11	55	14	52	11	50	14
TCACTTCAAGCTATCC	ref_5762_new	0	0	0	0	0	0	0	0	0	0
GTCGCCTTAGCTTTAT	ref_5762_new	55	92	53	58	111	48	104	52	97	37
CGGTAATTGAGGTCCA	ref_5762_new	6	9	5	2	13	9	16	2	11	3
GGATACCTTATTATTC	ref_5762_new	9	8	12	4	16	11	11	7	26	6
GCTTGTGTCATGTCCA	ref_5762_new	0	0	0	0	0	0	0	0	0	0
TTCGATATACGTAAGG	ref_5762_new	47	95	64	50	117	34	99	32	118	51
CATGGTTTTTGAAGAC	ref_5762_new	0	0	0	0	0	0	0	0	0	0
TTCGGGGGCCCTCCCA	ref_5762_new	34	64	39	40	50	42	79	35	53	38
GGGGGGAACAACGAAC	ref_5762_new	3	4	2	2	6	1	2	1	11	0
AGTTGATAGGCCATCC	ref_5762_new	0	0	0	0	0	0	0	0	0	0
ATGAATGGCGCAGTAC	ref_5762_new	22	36	31	21	40	18	44	12	50	24
GGCGTCGATCGCTACT	alt_5762_new	16	17	17	6	16	10	19	6	24	7
CTACTGCTACCGTCAC	ref_5762_new	10	29	16	7	26	16	28	16	41	11
TGGTACGTGATCTCGT	ref_5762_new	15	23	13	17	45	13	35	13	35	26
GTCTCCTTAGGGCATA	ref_5848_new	45	19	54	47	20	49	27	59	21	48
GGATACCCTCTAGAAC	ref_5848_new	0	0	0	0	0	0	0	0	0	0
TTCGCCTCTTTTCGAG	ref_5848_new	48	25	77	61	37	59	23	54	27	42
GATCATATAAAGGTGG	ref_5848_new	33	9	37	32	3	29	11	23	24	15
TTTACGTTAGAGGGCC	ref_5848_new	0	0	0	0	0	0	0	0	0	0
GTGGCGACAGATGATT	ref_5848_new	34	8	25	28	3	16	7	14	7	21
TCTATAACTAATTAAA	ref_5848_new	79	48	115	98	35	91	33	78	52	70
CCTTTTGATTCCACAG	ref_5848_new	47	40	57	56	22	40	20	41	28	35
AAAACTTCAGCTATGT	ref_5848_new	195	108	218	205	96	190	101	167	93	169
ACACTTCTAGATGAAG	ref_5848_new	0	0	0	0	0	0	0	0	0	0
TCGAAAGGACGCCTCC	ref_5848_new	52	16	32	45	15	29	16	43	28	30
GGGCATCAAGTCTCGT	ref_5848_new	0	0	0	0	0	0	0	0	0	0
CGGCCGATGCGGAGTG	ref_5848_new	156	119	251	209	133	163	107	179	132	167
GCGTAATCTCTGCTGG	ref_5848_new	0	0	0	0	0	0	0	0	0	0
AGCCGGGACGTCTGGA	ref_5848_new	0	0	0	0	0	0	0	0	0	0
AATATGGTATAGTTTC	ref_5848_new	141	50	156	132	55	118	55	121	53	113
TCATAGATGTGAATGT	ref_5848_new	26	11	24	18	8	23	15	14	13	14
TTGTCATTTACGGTAA	ref_5848_new	0	0	0	0	0	0	0	0	0	0
ATATTGACTGTATGCG	ref_5848_new	10	3	6	12	3	8	6	8	7	6
GGGTGTAAAGCGATCA	ref_5848_new	11	4	20	19	5	17	8	10	6	16
GGTAGCCCGTGACACA	ref_5848_new	10	2	15	10	5	3	5	15	9	12
TGGGGCCTGGGTTTGG	ref_5848_new	0	0	0	0	0	0	0	0	0	0
TATGCACAAGGAGAAC	ref_5848_new	0	0	0	0	0	0	0	0	0	0
GTTAGTTCCCTTAAGT	ref_5848_new	0	0	0	0	0	0	0	0	0	0
TATTAGTCTGCCACAG	ref_5848_new	0	0	0	0	0	0	0	0	0	0
AGTACATTACCTTTCA	ref_5848_new	8	20	21	25	23	12	18	15	19	20
GGAATCTTTAACGTTG	ref_5848_new	88	47	140	86	43	74	49	82	41	67
GTCGGCAGGCTAAAAA	ref_5848_new	30	9	52	43	23	26	16	36	26	34
GTGTTACCCCCACACC	ref_5848_new	131	54	165	164	49	141	49	148	54	105
CTTTGGTGATCAGCCG	ref_5848_new	44	19	48	31	29	40	23	42	28	56
TTCGCCCAATCTTTCA	ref_5848_new	148	74	175	151	83	142	79	140	90	141
GGTTGTGGGGTATTAC	ref_5848_new	272	152	272	253	149	222	141	232	144	186
GGATGTTATTGGCACT	ref_5848_new	29	10	36	36	11	23	21	31	21	16
TGCGTTTCGCACACCA	ref_5848_new	167	90	174	157	74	143	92	101	78	131
TAGGAAAAACACTGCA	ref_5848_new	68	25	90	67	27	55	23	65	29	65
TCGCATGACTCTAATA	ref_5848_new	76	46	77	76	37	73	38	59	33	49
ACGCTTATACAGTGTC	ref_5848_new	153	80	182	147	93	149	88	142	81	121
CAGGTAGGTTAGGTGC	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TACTGGTCGTATAATG	ref_5848_new	10	3	7	9	2	5	1	9	3	3
TCTCTTTTCTAATCGG	ref_5848_new	42	28	54	59	16	46	24	37	30	48
CATAGGTGTACTTACT	ref_5848_new	95	68	115	127	55	90	66	82	61	81
AGAGTCAAAAATTTTC	ref_5848_new	150	67	180	168	77	139	81	124	81	125
GGGTGGGAAGGTCAGC	ref_5848_new	41	23	46	41	15	44	28	47	29	36
TTCCCTATCGAACATT	ref_5848_new	422	236	475	442	267	337	250	363	280	392
ATGGTGGTACTTTAGA	ref_5848_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTGCCCCTGAT	ref_5848_new	64	27	83	85	43	66	38	58	36	69
GTTTGTCGCGTCCCTA	ref_5848_new	0	0	0	0	0	0	0	0	0	0
GTCAGAATTTATACAT	ref_5848_new	36	9	44	34	18	21	27	34	25	22
TACGCAATTCCAGTTA	ref_5848_new	155	104	219	189	103	169	113	184	101	153
TTTTTTATTTCACTCT	ref_5848_new	95	33	100	88	31	92	38	66	40	75
TTGAAGGGGCGGAGAT	alt_5848_new	64	37	71	83	45	53	29	56	39	58
TTGTCTTCCTGTCTTC	ref_5848_new	4	1	0	1	2	1	3	0	5	4
TATCTCTTGTCTTTGA	ref_5848_new	30	20	25	44	12	33	15	23	19	30
TGTTTACAACCACCCA	ref_5848_new	11	2	16	18	3	10	8	14	6	10
ACGCATTGACATTGCA	ref_5848_new	23	13	22	18	12	17	12	24	13	13
AACAGTTTTGTGTCTT	ref_5848_new	25	7	31	18	5	39	16	28	14	24
GATTATAATGTGATCT	ref_5848_new	201	131	271	221	127	213	153	193	144	189
AGAATACGTCCTTTAT	ref_5848_new	0	0	0	0	0	0	0	0	0	0
CAGCAAACTCGCGGCC	ref_5848_new	74	34	82	70	44	71	43	72	32	64
CTGTTCGCGGACCTGG	ref_5848_new	0	0	0	0	0	0	0	0	0	0
ATTTTTGGGTCTAGAT	ref_5848_new	0	0	0	0	0	0	0	0	0	0
CAGGCCTCCAGTATCA	alt_5848_new	908	412	1070	958	436	831	446	851	419	769
GGTAAATTTCTCAATT	ref_5848_new	249	121	369	316	134	282	162	254	111	231
AACTTCTCGTACTTCA	ref_5848_new	0	0	0	0	0	0	0	0	0	0
TTGCAGCAATCATTCT	ref_5848_new	13	6	30	13	16	13	3	15	9	14
CCCGCGATATACTGGC	ref_5848_new	0	0	0	0	0	0	0	0	0	0
TATTTTTGTGGTTTGC	ref_5848_new	2	1	12	7	4	5	10	3	9	8
TACTCACATGCCCTTT	ref_5848_new	27	15	31	31	12	32	11	20	13	37
CCTATAGTTACCAAAC	ref_5848_new	46	35	70	53	30	53	28	45	21	49
CCACGATTTCCGCTCC	ref_5848_new	79	68	116	86	63	93	63	100	74	69
AGGTAATAGAAGATAG	ref_5848_new	106	59	132	114	33	100	45	93	55	79
CACGTCAAACCGAGGA	ref_5848_new	34	12	52	40	20	32	9	35	20	24
TCGGTGATGGGACGCC	ref_5848_new	31	16	40	35	14	37	13	38	22	36
TCGCGGCGCGTGATGT	ref_5848_new	452	244	636	506	259	481	265	469	265	421
ATCTGGCCAGTCATGC	ref_5848_new	113	49	115	141	53	99	46	98	61	84
CAAGCCCTTTCTGTCG	ref_5848_new	85	46	112	88	62	67	34	86	45	56
CCGAATTCGGGTTTTT	ref_5848_new	146	86	179	115	65	115	59	128	65	93
GAGCTGCTAACCTTTT	ref_5848_new	90	32	108	111	44	73	49	113	55	79
TGTCTTTGCGTTAATA	ref_5848_new	22	15	31	38	19	38	22	23	20	23
ACTTCGCTAGGCCGTC	ref_5848_new	24	16	24	30	11	16	13	21	14	23
GCAACCGTATCGTGCA	ref_5848_new	16	35	16	19	30	5	29	15	35	6
TCCCCTACTAATATGC	ref_5848_new	0	6	0	1	3	0	8	0	5	1
GTAGCTCTACAGATAC	ref_5848_new	25	22	28	21	18	31	13	24	14	26
GTGATCCTTTTCCCTG	ref_5848_new	129	64	161	145	49	108	68	118	55	91
TGCCGCTTTCTTGGAT	ref_5848_new	1	0	1	0	0	0	0	0	0	2
AGTATCCAAATGGACC	ref_5848_new	115	55	142	147	70	105	66	109	58	83
GCTAGTCTTCACATAC	ref_5848_new	45	46	70	61	41	59	50	48	47	49
GGAGCGACACAAAGGC	ref_5848_new	93	29	95	65	44	62	50	66	30	73
TTTGCCCCGCTTAGGA	alt_5539_fdr	9	13	17	23	10	9	12	20	9	7
CTTATGTTCCGCGGCT	alt_5539_fdr	73	61	90	68	56	55	68	56	55	45
ATTCTCGCCAGGTTAT	ref_5539_fdr	55	41	48	48	34	37	51	44	36	50
AACGGGGCTCGTACAT	alt_5539_fdr	8	4	3	4	5	3	1	4	0	7
GGGCTATGCAGTCGGC	alt_5539_fdr	26	14	31	21	10	12	21	26	22	31
ATTATGCAATTGACTC	alt_5539_fdr	73	61	59	52	47	46	46	48	66	66
TTTTATATACTTTCTT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CGAGGATTATCTTCTC	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
GGACGTCTCATCTCAA	alt_5539_fdr	20	26	41	42	23	28	32	31	30	34
TCCCGACCGGTACACA	alt_5539_fdr	24	13	22	15	20	14	21	13	24	18
TTGCGCTCCGCATTAA	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CCACTTTGTATATGGT	alt_5539_fdr	60	69	75	73	68	57	81	56	75	47
CGGATGGTGTGAAGGT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CACAATTTGGAATTTC	alt_5539_fdr	13	27	35	29	28	25	20	11	28	19
ACCCCTTTCATAATTT	alt_5539_fdr	36	52	41	38	43	37	75	46	43	44
AGCGCTCACATGCTTA	alt_5539_fdr	53	33	48	45	44	38	39	35	54	36
GACTGTTGGTATCCTC	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TACCCAGCCTACCCTT	alt_5539_fdr	20	13	22	24	14	34	17	24	16	22
GAGATTTAATTCTGGG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TCACAATTGTAATCGG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCTGGCCTATAGG	alt_5539_fdr	17	24	25	14	13	20	18	16	25	13
GCGTACTGTACCAATT	ref_5539_fdr	63	58	97	88	49	82	44	70	62	46
CATTCATTTGTTATTC	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTCTGCAACCTAT	alt_5539_fdr	54	46	52	50	50	45	50	52	53	49
GTGAGTCATCCTTCTT	alt_5539_fdr	6	2	5	3	7	2	2	1	4	3
CTGTAGCCTACTCTGG	alt_5539_fdr	23	12	14	20	15	13	20	12	13	12
TAGACAATGCTCGGTA	alt_5539_fdr	33	24	48	29	53	35	36	34	30	38
CCACTGGCTCAAAGAT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGGATTCAATCAA	alt_5539_fdr	8	3	6	6	5	9	4	6	7	7
CTTTAGTGCGTTGATC	alt_5539_fdr	86	84	99	88	98	82	78	94	78	71
CGTGCGTAGCTCGGGC	alt_5539_fdr	25	19	25	30	14	24	27	22	25	21
ATGTTTGACTGATTTT	alt_5539_fdr	189	154	190	188	144	151	157	160	147	159
GTATCGATCGGCAGGG	alt_5539_fdr	2	6	6	5	1	6	9	1	9	2
CCAGCAGCTCCCGTCA	ref_5539_fdr	37	40	49	45	32	47	42	41	44	30
GTTCAGATCTGTACGT	alt_5539_fdr	28	22	37	33	29	22	17	24	16	46
GTTGTAGAGAGTGATA	alt_5539_fdr	62	45	70	57	52	50	48	51	55	39
GCGCTTCGTAAGTTGT	alt_5539_fdr	44	36	66	44	45	45	35	42	39	45
ATCTAACGGTTCATAT	alt_5539_fdr	66	60	78	66	56	35	62	60	57	46
ATTCTTGTATGAACGG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
AAAGTACCTATCACAA	alt_5539_fdr	48	56	59	39	51	56	38	52	44	52
TGTAAATCGAATACTG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTACTACATATAC	alt_5539_fdr	18	16	25	16	5	6	13	18	16	11
AAAATGGTCGTGCGCA	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGACTTTACCGAT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCTTTTCTTTCCC	alt_5539_fdr	4	14	7	15	21	7	14	8	18	10
TCGTGACTTTACCGCT	alt_5539_fdr	32	25	46	30	25	33	15	31	33	25
TTATTAACCGTAAGTT	alt_5539_fdr	127	113	168	129	107	111	120	107	142	111
TCGGGCTCCACCAGGT	alt_5539_fdr	26	30	37	37	33	28	33	32	23	31
TCGTTCGCCCTTTGGG	alt_5539_fdr	17	21	24	19	18	19	21	16	23	17
TTGAGTCAATCCCCCA	alt_5539_fdr	15	21	19	13	18	12	7	7	21	10
ACAATGCATAGTATGC	alt_5539_fdr	17	22	25	19	20	30	21	19	13	25
CTGTCTATCCGCTCAA	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CACCTACCCAGCATTT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CAAGATCTGCTTTCCG	alt_5539_fdr	25	20	30	40	25	32	22	28	25	28
CCCGGGAACAGGTGTA	alt_5539_fdr	28	28	30	29	28	39	29	24	23	21
AGTCGGACAAATCATG	alt_5539_fdr	8	5	16	21	5	13	10	12	13	11
CCTGTATAGCTCTTGG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTACTCTTCGAG	alt_5539_fdr	55	69	95	88	61	57	57	74	88	63
AACTAGGGAGGCCTTT	alt_5539_fdr	13	12	9	11	12	8	11	11	5	8
CCCGTTCGCAGGACTC	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
ATCAATAGTAGTTTGA	alt_5539_fdr	39	41	48	36	37	44	30	52	40	43
TGAGCCTTACAGTGGT	alt_5539_fdr	37	31	40	42	43	25	45	43	44	32
CGAGTGGCTAGTCATC	alt_5539_fdr	0	0	1	0	0	0	0	0	0	0
GGGATTTTTTATAACG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTTTTCGTGATA	alt_5539_fdr	11	12	13	15	8	6	14	16	13	13
TTCTAGTCCCGCACTC	alt_5539_fdr	65	61	74	62	43	75	63	63	68	45
ATATCTTAAAGGAGTG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
AATAGACGTCCTATGT	alt_5539_fdr	262	233	287	290	257	238	245	247	262	198
TTTGGTCCCACCACAT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGGCGGTGGCCT	ref_5539_fdr	200	129	201	214	132	187	157	192	127	204
TTATTATTGATTACCT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGTATTCCCTGC	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGCTAATGCAAAG	alt_5539_fdr	17	12	28	22	16	23	20	16	15	20
GACTAATAGCGGCTCC	alt_5539_fdr	19	12	18	22	12	13	15	25	15	20
ATTGACACCTTACCTA	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TCACTGGAAAGTTTCG	alt_5539_fdr	26	20	31	28	12	23	22	14	17	21
CTAGGGTGCGGACGTA	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CCGACTGGATACGTCC	alt_5539_fdr	10	21	21	10	16	12	20	10	18	5
TAAGGCCATAATGCTG	alt_5539_fdr	27	20	33	28	15	17	23	24	28	46
ATGTTGACGACATCTT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TCCCAAACGTGTGGTC	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGACATGTGTTCT	alt_5539_fdr	7	8	8	15	8	11	13	11	8	10
CCGTATAGCGTGTCGA	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAACTTCTTGCTC	alt_5539_fdr	89	65	99	94	67	91	74	64	84	77
CGCGTGATTCACTCCG	alt_5539_fdr	0	4	0	4	5	2	1	5	1	4
GTAAGTAGGGTGTTTA	alt_5539_fdr	81	70	111	88	55	71	79	87	65	66
CTTTTGTCCAAACGTG	alt_5539_fdr	11	6	3	2	8	5	7	12	10	15
TCACTTTAGTTTGTAG	alt_5539_fdr	27	19	32	34	17	20	15	31	27	15
AAAAGACGTCCTATGT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGACTCTATTTGG	alt_5539_fdr	3	16	10	8	14	9	15	8	5	7
TTATCTTGCGTTTACC	alt_5539_fdr	8	2	2	6	7	6	7	1	11	6
TTATTAGGCCAGGCCT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTACTGTAGGCT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
AGATGTGTCCTGGGTA	alt_5539_fdr	23	12	25	16	25	15	18	15	18	15
CCCAGCTTGTTATCTC	alt_5539_fdr	31	56	41	31	45	23	45	33	36	26
CCTATAGACCCCACCT	alt_5539_fdr	41	36	58	47	38	38	40	46	52	61
TCAGTGTCTATCGGGT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
GGGGATGGTTGCTTTC	alt_5539_fdr	185	141	238	200	145	179	124	181	161	161
GGGTTTAGTGGGTATG	alt_5539_fdr	15	13	20	21	19	20	22	20	21	16
CTGTGTGCCATCAACG	alt_5539_fdr	13	17	25	15	18	24	11	18	21	13
GAGGGTGGCTTAAGCC	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTAAGCATTGAGT	alt_5539_fdr	24	29	23	15	31	20	25	19	22	21
GGCAGGCTGTAATTCT	alt_5539_fdr	56	52	69	62	41	52	59	63	57	58
GTTTCCTATTGTATGT	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
GTCTAAGCTGAGTCCG	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGACCGTAGAGAA	alt_5539_fdr	0	0	0	0	0	0	0	0	0	0
CTATGTTATGCTTTCT	alt_5539_fdr	18	29	41	35	18	27	27	28	22	20
CTTATTATGCGAGGGT	alt_5539_fdr	31	25	40	29	18	29	30	27	34	28
GATTCAATCGCAGTCA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
ACCGAAGAGATACCGT	ref_2406_reverse	41	34	54	49	68	38	38	25	64	36
AGAGACCCCTGCACCC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CAGTACAAATCACGTG	ref_2406_reverse	11	13	10	12	14	11	12	11	15	10
TGGTACCCTTAAATTT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGGTGGTAACCCG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CGAACATGTACACGCA	ref_2406_reverse	49	39	34	33	35	26	47	30	45	28
CGTGTTGGTTCGCGCC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTAACATAATCGG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCAGTAGGTGTCT	ref_2406_reverse	9	14	13	11	13	7	14	7	21	7
TCTTGAGCAATGCCAG	ref_2406_reverse	15	15	18	11	4	14	15	13	16	9
TTCATGCCGGCTTACT	ref_2406_reverse	22	26	40	22	36	20	36	33	35	24
ACCCTCATTATCGATT	ref_2406_reverse	10	8	9	6	11	9	14	8	7	6
ACCCATTGCACATACT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TATCGCTGGGTAGATC	ref_2406_reverse	13	13	16	9	19	8	17	14	14	11
TCACTGTTTATCCGGT	ref_2406_reverse	11	18	12	12	15	9	18	10	13	13
TATCAAGAGTTCGTTA	ref_2406_reverse	26	25	32	25	23	29	26	25	25	20
AGTACACCTGTTCCAT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCGACCCTGAAGG	ref_2406_reverse	11	12	17	16	22	11	8	8	20	18
GGTATGGCTGTGTATT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
AGAGCGCGCTCATCCA	ref_2406_reverse	5	6	9	3	5	3	2	2	6	2
ATTACTGTTGCGGCAT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGATACTTGCTCT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCAAGTCTAGAAC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GCGAATGTCTCTTGAT	ref_2406_reverse	44	36	51	33	37	40	59	48	59	39
GCTATGTAGCCGGTTA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
ACAAGAGGTAACCCTG	ref_2406_reverse	15	20	19	15	23	16	10	18	17	17
TTCTCTGGCGGGCGTT	ref_2406_reverse	94	125	120	97	108	107	101	91	109	106
TGTTGCACCTGTTTTT	ref_2406_reverse	31	52	41	42	46	25	38	41	59	23
GGGGCGCCCTCCTGCG	ref_2406_reverse	31	16	42	27	34	22	28	20	30	14
TGTTATTGATGAGGCT	ref_2406_reverse	2	1	4	3	4	8	3	3	8	0
GACCGTGCCGTGCGCT	ref_2406_reverse	7	14	28	15	26	13	21	9	9	16
TTTACAAACATGACCA	ref_2406_reverse	71	70	87	73	66	75	72	63	73	59
ATGATTGTGCCTCGTC	ref_2406_reverse	62	77	76	79	83	58	64	51	85	51
GATCCTACGAGTCGTA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTCTGGTTAGTTC	ref_2406_reverse	102	138	135	119	165	123	138	107	149	104
TTAGTCATTGGTTCGA	ref_2406_reverse	28	44	53	26	51	24	58	36	54	30
GGGTCGATCCTGAGTT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTGATCCTGTTCGTTG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTTTACTGTTTCTCAC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCTGTGAGAGGT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GACTCAACCTGCTTCT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
ACAATTACCGGTTTGT	ref_2406_reverse	23	23	20	11	18	30	30	21	25	11
ATGGTCACAAGACTGT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGCCCTACAGCAC	ref_2406_reverse	8	3	6	2	8	4	4	6	6	3
ACTATCTCGCCATTCC	ref_2406_reverse	56	74	58	52	60	50	70	47	54	46
TCAATCTAAAATTGAA	ref_2406_reverse	16	16	33	11	24	18	23	9	37	22
ACAGCGGCCTCCCGGT	ref_2406_reverse	81	63	87	79	93	52	88	64	104	61
AAACAGAATGATTAGC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GCCATTATAGAGTACT	ref_2406_reverse	6	6	10	6	18	6	8	9	6	7
GATTGTTTTAAATTTG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CATGGATCATGGGTGG	ref_2406_reverse	59	73	79	77	70	48	59	56	63	53
TGCGGGGGGTCTAGCC	ref_2406_reverse	25	24	18	22	22	21	24	22	35	18
GATCCGCCCGCTTATG	ref_2406_reverse	7	9	8	2	6	5	11	3	3	5
CATTCATGTGCTTCTG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTATCAAGCGGTG	ref_2406_reverse	11	8	13	12	12	15	8	6	14	8
TCATCGCTGCGGTAAG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GCATCATATTGGTGGT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTCATCTTCTGGATAG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGATCGATCGCGG	ref_2406_reverse	1	0	0	1	5	2	0	0	2	2
GACCCCGCTAGTTATC	ref_2406_reverse	37	38	38	35	34	36	40	25	50	26
TATCATATCGATGTAG	ref_2406_reverse	10	11	19	14	18	13	30	15	14	18
TAAGGAGGTGGTTCCA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCATCAGCTGAGCGCA	ref_2406_reverse	83	164	116	131	148	86	177	105	160	94
TGCCCGCACCAAGGTT	ref_2406_reverse	9	13	23	13	14	9	12	15	23	5
TGTTCCGACGTAAGCG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCTTGTAAGTTCT	ref_2406_reverse	2	4	8	12	4	5	8	2	7	2
CGGACTATTATCCGAA	ref_2406_reverse	3	1	3	2	7	1	6	4	5	2
CTGTTTTTACGCGAAA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCCGACCTTGCCC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTAATGCACATGAGGA	ref_2406_reverse	57	68	83	74	47	45	69	43	83	57
GTGCCTTTCTGTGACT	ref_2406_reverse	11	14	13	14	10	16	9	9	18	11
AACACCCCCATTCACT	ref_2406_reverse	16	16	16	11	13	16	15	12	14	12
TTGCTGAATAGCACAG	ref_2406_reverse	93	118	114	103	127	123	124	95	119	80
ATTATGTAACCGCGTT	ref_2406_reverse	46	31	48	37	43	41	26	30	28	34
ACCCGGGTTCTGTCCC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCGGGGGTCTTTA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGTCCTTGGACCT	ref_2406_reverse	39	26	33	32	34	29	31	32	43	27
AGGAATCTTTAGATAC	ref_2406_reverse	29	36	35	31	40	41	25	41	36	24
TCGTTGTTGGATCGGT	ref_2406_reverse	43	54	48	46	50	38	40	36	47	36
AGAGGTCACTACGGAT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAACTTATATATT	ref_2406_reverse	76	61	82	59	81	66	70	61	91	54
CTTAAGAGACACAGTT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GGATGTATCTTAGCGT	ref_2406_reverse	12	20	12	21	31	12	21	17	29	11
TGTCAAGCTCACGTGG	ref_2406_reverse	15	23	23	16	23	17	18	16	20	28
GGCTGGATCTCGCAAC	ref_2406_reverse	325	345	401	327	318	312	366	309	387	314
GCCTTGCGTTAGACGG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTGTACCGGTCTTCCA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGCGTAGGGTCGA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CCACGAGCGTATAGGG	ref_2406_reverse	16	7	10	4	9	11	5	5	6	7
TGTGCTGAACGAGTGT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
AGATTGTCTAGCTTAC	ref_2406_reverse	24	54	27	19	52	18	51	26	62	12
CTGGGTTGCATTGTAG	ref_2406_reverse	10	14	10	7	10	12	4	14	17	7
GCCAGAAACGCCGCGG	ref_2406_reverse	125	278	202	162	284	155	296	143	243	108
GGACACCCGAGAGGCT	ref_2406_reverse	7	6	4	4	5	4	1	3	0	8
CGTTGCTTTTGTTCGC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
AAGCGACTTAATCGAA	ref_2406_reverse	2	2	3	2	6	2	1	1	1	2
TTCCAGAGCTCTTCTC	ref_2406_reverse	8	16	15	12	21	13	18	14	20	11
GGGATACTTACGAGAA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATCACACCAATT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GGGGGTCCTTGGGTAA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGGGTTGTAGTAA	ref_2406_reverse	18	16	23	28	21	32	29	19	27	17
CGGGGAGTGTTCAAAT	ref_2406_reverse	23	30	24	20	25	37	23	20	34	20
CCGACTCGTAGGTTGC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGTCCAAATTGGA	ref_2406_reverse	43	28	45	42	51	35	44	34	37	30
CACGCATCATGTGTCA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GCTACCAGTCGCTTGA	ref_2406_reverse	44	54	68	60	57	49	65	35	58	41
GAGGACGTTTCGGGGG	ref_2406_reverse	15	16	5	11	16	8	11	11	10	8
CAGTTAGCGGTACATA	ref_2406_reverse	130	120	140	112	143	133	152	100	168	98
GGTGCATTGATTTCGC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTCGTGCGGTTCA	ref_2406_reverse	11	13	14	12	9	7	5	8	8	11
TAGCTTCCTGTTTTTG	ref_2406_reverse	6	10	10	7	13	3	10	3	17	7
TGGGCCTAGCCGACGT	ref_2406_reverse	3	2	3	2	3	3	5	2	1	1
CTCTATCGGGTATGGT	ref_2406_reverse	14	19	19	9	22	11	15	22	23	11
GCCAGCGCGCGAGTTG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCTGACCCTTCGA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
AAATTGAGGAACTCAT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
AACTAACTGTGAATTG	ref_2406_reverse	89	86	74	70	66	64	82	70	96	52
TTTCCATCTATACCTC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTTATTTGATTCT	ref_2406_reverse	2	2	5	1	1	4	6	2	0	0
ATACATTCATGTAATT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCAGTCATTCTTA	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGGTTTCTATGTC	ref_2406_reverse	40	27	51	39	37	24	33	42	42	36
ATTTCGACACGGGTGT	ref_2406_reverse	56	52	64	53	63	49	60	55	59	46
TGGATGTCGGGGATAT	ref_2406_reverse	13	10	17	10	14	11	9	9	13	7
TGGATCGAAATTGCAT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
CACTGTTCTAAGTACC	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCGCTTGGTGGTC	ref_2406_reverse	66	92	88	78	80	69	94	73	91	68
ATTTCGGTGGGATGTG	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTCAATACATAT	ref_2406_reverse	0	0	0	0	0	0	0	0	0	0
GAATATGTCCTAGAAT	ref_2406_reverse	92	151	146	103	134	135	137	99	119	98
CCCGGTTCTCTCGATT	ref_2406_reverse	40	41	49	44	49	39	62	38	62	41
CTGATAAAGAGCGGAT	ref_2406_reverse	80	94	101	64	95	85	86	75	98	69
TCCCGAGTATTCTGTG	ref_3388_RC	5	15	15	22	15	5	11	7	14	12
CGTGGCCCCTTACCAG	ref_3388_RC	78	131	146	132	103	89	111	100	133	99
GTTCCAACACATCCAA	ref_3388_RC	20	23	17	21	28	17	22	20	20	12
TTTTTTTAGATGGATG	ref_3388_RC	0	0	1	0	0	0	0	0	0	0
CTTTCTTAACGCTGGG	ref_3388_RC	1	1	3	4	6	1	2	2	4	1
CGAGGATTGTTCTATG	ref_3388_RC	80	134	101	97	123	72	137	85	140	93
TTAGCGTCGTTAATCT	ref_3388_RC	32	39	48	43	29	25	41	32	37	25
GCAAATGCAGTAGTGT	ref_3388_RC	14	43	32	25	36	37	34	27	27	30
AGACTTTAGAGGGCGC	ref_3388_RC	12	16	10	11	20	15	15	14	21	11
AATCGGGCCTAATGTT	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
AAGCGCCCTAACCTGG	ref_3388_RC	63	103	84	67	71	68	97	77	91	59
GTATATCTAGGGATGA	ref_3388_RC	22	30	24	30	36	25	37	27	26	18
AACGGTGCTATGGCCC	ref_3388_RC	38	30	59	31	29	28	33	29	35	29
GGTTTGTGGCAACAAA	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
CTTGTCTCCGTATTAC	ref_3388_RC	48	68	54	55	67	46	71	38	68	36
CTGGTCGCTAGAAGTA	ref_3388_RC	37	34	29	25	31	27	37	27	30	19
ACCCTCTTGGCGTACG	ref_3388_RC	216	291	304	242	311	221	297	202	275	224
GCATGTTTTTCCTTTT	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
GGATATGAAACCGGCC	ref_3388_RC	0	1	3	3	6	2	2	1	2	3
ACTGAGGACGTTATGT	ref_3388_RC	67	69	61	71	96	61	71	70	79	48
CAGACCAATTAACCCG	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
TGGCACATAGATAATT	ref_3388_RC	89	121	92	90	90	88	99	77	100	80
CATATAGGCTGTCATA	ref_3388_RC	33	51	55	24	39	31	38	31	41	32
CAGTTGCGATACTCTC	ref_3388_RC	22	15	26	30	26	25	19	19	31	26
CGATTTGCTATTTCTT	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGATCGAAATTA	ref_3388_RC	44	47	71	45	59	62	44	30	59	37
AAGTGCAAGTGTGTTC	ref_3388_RC	15	19	5	7	9	14	16	13	18	17
CTTTGCGAGTTTGATT	ref_3388_RC	24	28	20	24	41	24	33	23	31	15
GCCCCACCTTAACAAG	ref_3388_RC	29	36	34	25	25	25	47	11	43	33
GAATACTCTGGGACTT	ref_3388_RC	21	18	30	18	35	18	21	17	27	18
TATTATTAAGAGCTCC	ref_3388_RC	29	32	31	25	38	22	29	23	41	26
AACGGATTACCATGTG	ref_3388_RC	6	7	12	14	9	6	8	10	13	6
TCTCCTGATAGCATTC	ref_3388_RC	51	53	61	41	68	50	66	55	70	41
TGGGAGTTGTAGATAA	ref_3388_RC	19	16	24	18	19	17	13	15	17	16
GACTACCGTGTTTTTT	ref_3388_RC	11	10	7	6	11	12	11	13	20	8
TGTTTATTTGGGCTAC	ref_3388_RC	17	19	29	20	24	21	33	18	22	22
TTAGATTCAAGTATAT	ref_3388_RC	17	22	18	25	19	29	31	21	21	12
TACTTTATGGTCCCCA	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
GTCCAGGCGTATGGTT	ref_3388_RC	20	21	24	15	25	14	26	7	30	17
CTAGGGTGCCCGGTTG	ref_3388_RC	4	1	5	1	4	3	2	0	4	0
TTTTCATCGCTTTTAT	ref_3388_RC	11	6	14	11	11	14	11	9	13	14
TTTTTCCCCTCTTCTG	ref_3388_RC	10	14	24	8	9	15	16	12	13	7
GTGCTGCCGCTTTTAG	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
TCATAACAGTTTTCCC	ref_3388_RC	20	31	22	23	24	18	23	24	17	30
ATTGGCTAGTGCAATC	ref_3388_RC	91	153	125	108	162	89	144	92	146	72
TGCTGAAGTGAATGAT	ref_3388_RC	40	47	43	40	58	25	33	23	44	34
CTTTATACATCGCACA	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
TAGCCCCGAAGGCCGC	ref_3388_RC	4	6	3	6	2	5	5	6	7	7
GAATATCCGGGCGAAT	ref_3388_RC	6	8	4	10	16	7	18	20	14	4
CCGGGAAAACCAATGT	ref_3388_RC	14	3	8	14	11	7	8	17	11	12
AACCACTTTAAAGCTG	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
ATGCGTCCATACGGCA	ref_3388_RC	23	17	36	26	28	21	32	24	26	18
GTCTTTAAAGTTTGCA	ref_3388_RC	33	28	29	23	28	24	54	26	47	31
GATTTTGGATGTCCCG	ref_3388_RC	2	2	2	5	1	1	0	0	5	3
ATACTTTGTTAATAGT	ref_3388_RC	16	19	22	16	16	17	23	11	17	15
TAATACAGAACCTCTC	ref_3388_RC	184	145	220	159	192	198	184	166	175	179
TACACCTGTTGACGCT	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
GTCCGCTCTGTGCGGT	ref_3388_RC	50	31	52	44	47	38	37	47	47	38
TGTCCGTGTATTGCGA	ref_3388_RC	20	16	13	17	15	21	26	13	19	5
TCTTAGATACGGAAAT	ref_3388_RC	76	118	78	83	88	67	97	93	127	61
TCATCCATTCATTTTA	ref_3388_RC	24	23	20	23	24	23	37	32	24	15
ATTGTACGGCCATTGA	ref_3388_RC	11	12	10	10	10	4	10	8	6	21
ACCTGCGGTGTTCCTA	ref_3388_RC	0	0	0	0	0	0	0	0	0	0
TACTTTAAGAACCTCG	ref_3388_RC	14	11	14	11	14	11	15	9	16	12
ATGGGTCCGTATTTCA	ref_3388_RC	33	36	42	32	35	21	24	27	44	36
TGATCGAGGGTATGGA	ref_3388_RC	56	44	47	55	54	45	52	46	51	34
TGCTACTTTATTGTGC	alt_6098_new	0	0	0	0	0	0	0	0	0	0
ATATCAGGTGATATGT	alt_6098_new	74	71	94	73	90	60	74	73	82	55
TTCCTTCTGTTGATTT	alt_6098_new	15	16	17	11	17	14	30	14	21	15
GTTCATCGTAGATATG	alt_6098_new	4	7	8	1	2	3	1	3	2	4
GTTATCGTTCCTTTAC	alt_6098_new	19	23	31	20	25	20	29	21	23	27
CGCTTGTTTTAGAGAC	alt_6098_new	31	23	24	20	17	21	17	34	27	11
TGCGTCGATAGGTTAG	ref_6098_new	61	44	73	44	48	48	50	51	59	59
ATGTATGAAGGTTACC	alt_6098_new	28	33	60	37	35	44	43	21	49	29
GAGACACGCATGCTTG	alt_6098_new	70	83	100	73	76	60	66	60	73	54
CGGGTGGCCCGAACGC	alt_6098_new	3	1	2	3	0	1	3	2	0	1
ACTTTGGGGGCTAAAT	alt_6098_new	38	38	46	56	47	48	44	34	38	34
CCTGCTGGAAATACTT	ref_6098_new	19	14	29	21	22	23	21	16	19	21
CATCTTACAGTTTGGC	alt_6098_new	27	32	52	27	28	40	43	32	33	34
CTGCTGAACTGAACAT	alt_6098_new	15	15	36	40	28	42	21	22	15	29
TTGGGTATGGTGGAAG	alt_6098_new	68	53	77	43	53	57	41	44	62	44
CCTACTGACGTTACGC	alt_6098_new	17	8	20	16	15	23	17	14	14	11
CACCGGATACGTCAAA	alt_6098_new	57	50	57	67	44	58	77	56	64	44
GGGTCCGTTGGCCCTT	alt_6098_new	107	94	121	98	87	94	91	84	108	97
GCACTGGCGAGAACGC	alt_6098_new	23	33	40	31	33	36	32	25	35	34
AATGCTAGGTCTGCCT	alt_6098_new	20	26	43	31	32	25	24	20	24	20
CCTATTTATACTTGGC	alt_6098_new	62	72	57	66	77	54	76	53	70	57
TCGCCAATACTCTGTC	alt_6098_new	0	0	0	0	0	0	2	0	1	0
CGAAGCGTTCGCTATT	alt_6098_new	119	118	142	141	129	118	110	123	139	106
AGTACCGAATTCTATA	alt_6098_new	0	0	0	0	0	0	0	0	0	0
GTTACACTATGGGTAC	alt_6098_new	0	0	0	0	0	0	0	0	0	0
TTTCGGACCACCTCGC	alt_6098_new	0	0	0	0	0	0	0	0	0	0
GCATATGGAGCTTGGA	alt_6098_new	52	53	85	71	65	82	62	55	62	47
TGGTGACCGGTGGGTG	alt_6098_new	0	0	0	0	0	0	0	0	0	0
ACCCCCACACGTGAGC	alt_6098_new	72	87	110	82	66	54	93	53	90	46
GGATCGGCTGAGTATG	alt_6098_new	0	0	0	0	0	0	0	0	0	0
CAGTTGTCCGATCCCT	alt_6098_new	12	15	10	13	16	13	21	11	15	3
TACTTTGTGTTAGAAA	alt_6098_new	0	0	0	0	0	0	0	0	0	0
GTTAACAATGGATTCT	alt_6098_new	13	6	9	7	7	13	7	6	7	7
AGTTTCCCCGGAAGGC	alt_6098_new	22	14	21	14	26	18	17	14	18	8
AAGGAATTATCCGACA	alt_6098_new	190	179	254	201	171	174	207	236	198	184
CCTAGAATTTATCGGA	ref_6098_new	28	56	34	38	44	32	49	35	34	39
CCAGTTGAGGAAGTTT	alt_6098_new	36	50	66	47	41	37	67	44	65	32
TGGGTCTGTTCCTATG	alt_6098_new	0	0	0	0	0	0	0	0	0	0
TTTGTGTCCTCAGGTT	alt_6098_new	0	0	0	0	0	0	0	0	0	0
TTGACATCCTGAGGCG	alt_6098_new	26	20	39	16	26	21	44	34	34	24
CTTCCTTCCTTTATTG	alt_6098_new	40	34	48	50	39	30	36	38	36	37
GCAGTCGTTTGTTTAT	alt_6098_new	0	0	0	0	0	0	0	0	0	0
TGCTAATATCGCGCCG	alt_6098_new	0	0	0	0	0	0	0	0	0	0
CAGGCTGCAAGATATG	alt_6098_new	0	0	0	0	0	0	0	0	0	0
AAGTCAGGGCCGTAGA	alt_6098_new	78	48	87	58	59	73	78	71	65	71
GTGTCCTTGTTCAGGT	alt_6098_new	656	602	783	675	551	624	628	552	624	547
GCCTGAGAGCGTCAAT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ACACACGTACTCCCTG	alt_6098_new	49	99	75	68	96	69	92	51	108	55
GTTCATCATTGAAGTC	alt_6098_new	25	18	20	30	18	16	20	25	24	17
GAGTTCTTGGACCAAA	alt_6098_new	109	119	130	110	113	93	124	82	123	104
ACCCATAATCGAGCCC	alt_6098_new	89	100	132	115	81	105	104	99	100	101
TTTGGTCGCCCGGTGT	alt_6098_new	18	11	9	10	14	6	13	8	6	8
ATTCATAAGGGGCATT	alt_6098_new	4	3	3	2	3	2	2	4	4	0
GGCGTGATATTGAGCG	alt_6098_new	58	44	72	41	55	66	67	53	71	57
GACCGCTACCGCTCTT	alt_6098_new	15	15	15	11	10	6	13	10	9	7
GTTAGCATCTGGAGGT	alt_6098_new	14	6	3	4	8	4	4	5	4	1
TCCAAGGTTGGATATG	alt_6098_new	48	37	47	46	42	36	36	37	46	37
TGTACTCGATCCAGGC	alt_6098_new	7	9	4	5	12	1	7	6	14	8
TCGGTGCCGTGTGTTG	alt_6098_new	20	21	37	28	24	12	23	25	21	21
TTTCAAGATACCATCT	alt_6098_new	0	0	0	0	0	0	0	0	0	0
TATATCGACTCTTCAA	alt_6098_new	0	0	0	0	0	0	0	0	0	0
ACTAGAGTGTGGTGAC	alt_6098_new	0	0	0	0	0	0	0	0	0	0
ATAATAGATCGATGCT	alt_6098_new	75	71	81	59	64	47	72	51	85	46
CTTTACAAAACAGACC	alt_6098_new	0	0	0	0	0	0	0	0	0	0
TTTGAGACCTTTACAC	alt_6098_new	22	7	21	25	17	19	21	30	17	10
GTATTTCCTTTTCCGT	alt_6098_new	79	54	91	71	50	70	82	72	49	55
AGCTGTCTCCGTTACC	alt_6098_new	176	178	221	228	177	208	197	182	200	164
TTAAAGTCTTTCGTCA	alt_6098_new	0	0	0	0	0	0	0	0	0	0
CCCTGCAGCGTGGGGG	alt_6098_new	26	27	32	36	24	20	39	22	23	29
CTCAACGACATCGCTA	alt_6098_new	31	40	40	39	57	37	54	21	48	37
GTCTCACAACTTCACG	alt_6098_new	19	19	40	17	38	19	19	18	27	14
TGCCTATCAACGTCTT	alt_6098_new	0	0	0	0	0	0	0	0	0	0
CTGCGTCCATCAGCGA	alt_6098_new	68	70	70	58	66	60	69	66	73	55
GCAGCTTTCAGTCTTT	alt_6098_new	20	17	27	22	22	21	16	27	23	16
GGCGCTCCGCAACATC	alt_6098_new	169	160	198	156	128	144	175	157	135	114
ATGACTTGGTGGCCTC	alt_6098_new	13	15	24	12	16	8	25	13	22	30
GTCTACAGTTGACACT	alt_6098_new	0	0	0	0	0	0	0	0	0	0
ATAGCCTAGGTCGACA	alt_6098_new	0	0	0	0	0	0	0	0	0	0
ACCTAAGCACTCGCAT	alt_6098_new	48	36	58	50	45	48	56	38	45	38
TTTATGTGACTGAAAT	alt_6098_new	25	28	37	34	36	24	32	23	29	22
TTCCAGTTGAATCTAA	alt_6098_new	21	28	36	27	20	31	21	23	37	20
GTCTTAATGTACTACA	alt_6098_new	10	10	9	14	8	4	1	6	9	4
TATCTACGTTTTACGT	alt_6098_new	2	4	5	4	2	2	11	3	6	2
GACAGACACCGTCTAA	alt_6098_new	45	46	68	56	63	44	58	56	73	52
TAGGCATATCCTCCCA	alt_6098_new	23	27	18	21	21	17	29	21	20	25
TACGGGAAGTCAGGTT	alt_6098_new	13	7	7	3	6	8	13	2	7	22
ACTCATTACATCGAGC	alt_6098_new	8	6	7	3	4	2	0	1	4	4
CTCAGTGGACATGGTC	alt_6098_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTATTTTGTAT	alt_6098_new	10	12	17	9	9	9	12	13	10	10
GTTCGCAAGTGGTCTC	alt_6098_new	70	110	127	89	100	82	101	89	112	84
TAGCGTGGTGCCGTGT	alt_6098_new	5	13	7	15	7	8	10	11	13	8
TTTCCATGTAAGTACT	alt_6098_new	63	65	82	76	47	60	81	62	55	78
TAGGGGTAGCTCGGCA	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
CCGAGTTACCCCGTGA	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
GTCCTAAGTACAATTT	alt_2615_missing	13	24	19	20	23	19	25	13	23	14
CTACTCTCCGCTTTGT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
TCGTACATCGGGCTTC	alt_2615_missing	19	39	23	21	40	23	39	21	47	22
ATCTTGGCCACATTTG	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
TCACATGGTATTTTAT	alt_2615_missing	12	26	14	16	33	21	22	22	36	7
TAGCGTTAGAGACGAA	alt_2615_missing	52	80	71	64	91	46	117	57	108	54
CCTACATCAGAAAGCG	alt_2615_missing	15	56	44	28	68	26	72	36	55	32
GTGTTGTTTTCTTTCC	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
CTTCGCTCGTTGTGCT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
ATGACAAAGTTTTCTC	alt_2615_missing	7	9	1	8	9	6	4	4	8	2
TTGGCGTGAGCGCATT	alt_2615_missing	4	5	6	7	6	5	3	1	9	1
TCGAGTACACGAACCA	alt_2615_missing	29	56	23	29	67	22	70	14	76	17
CGATCTAGGCTCCCTT	alt_2615_missing	7	15	5	6	16	10	20	7	20	4
CGGTTGGCTAAGTCCT	alt_2615_missing	28	43	27	21	35	24	39	19	54	18
TTACTAAGCCACATGT	alt_2615_missing	14	37	20	18	36	18	52	17	31	24
TGAATCGGGTGTGTCC	alt_2615_missing	53	104	62	48	118	61	115	59	142	64
TCGCGTACGGCCATAC	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
CAATAATGGCCAGGAG	alt_2615_missing	11	17	12	17	26	16	29	8	24	0
CACACCTCTAGCGAGT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
GCTCTAACCAATTTTT	alt_2615_missing	34	39	50	42	59	33	69	30	64	35
TTCTATAGATTGTTTT	alt_2615_missing	1	7	6	3	13	1	13	6	6	2
AGCGCTTCGCATCAAT	alt_2615_missing	0	0	2	1	0	0	0	0	0	0
AGGAACGCCTTTATTT	alt_2615_missing	10	20	9	5	26	4	35	9	24	15
TTGCTTTGGCGCGTTA	alt_2615_missing	13	21	14	12	14	9	18	8	19	13
TTGCTCTTGTGAAGAG	alt_2615_missing	12	56	34	34	67	24	60	14	73	29
GTGCACTGGAGAGGCG	alt_2615_missing	31	56	34	32	55	32	41	26	64	23
TTCATCTTACCGTGGT	alt_2615_missing	2	9	6	1	8	2	6	2	7	1
AATTCTGGTCAGCATA	alt_2615_missing	21	34	18	17	29	23	33	20	24	13
AGGACATGTAGGCAAT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
TGCTCATAACATTAAC	alt_2615_missing	23	25	12	21	34	16	30	17	46	13
TCATTTGAGTTAGCTT	alt_2615_missing	5	15	8	6	15	8	4	6	16	6
ACGTCAGGGGGGGTCA	alt_2615_missing	23	64	24	32	58	24	48	25	40	15
CAATACCCCCTGGTGT	alt_2615_missing	19	30	12	7	28	6	15	14	24	11
CTCGCCTAGCAGTGTA	alt_2615_missing	17	43	28	20	53	16	45	17	45	17
CCGGCTTCTAGTTCCG	alt_2615_missing	1	2	0	0	4	1	4	0	2	0
TCACTACGCGCCGGAC	alt_2615_missing	1	3	0	0	1	1	0	0	4	2
TATGGTTAATATCTAT	alt_2615_missing	3	9	7	3	6	8	11	5	13	2
CTCTCATGTTATGACG	alt_2615_missing	102	197	140	78	160	108	207	103	224	105
AAGCGTTCATAGGTCT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
AGAACAGTGCGAAGTG	alt_2615_missing	197	354	225	192	370	197	387	173	413	170
TAATCGCGACTCTGTT	alt_2615_missing	61	96	74	86	79	53	100	71	108	60
GTTACTGCGCACCCAG	alt_2615_missing	3	7	3	1	1	0	4	3	1	1
TAACCAAGCTCAATTA	alt_2615_missing	5	21	5	10	11	5	13	6	19	3
TAAGTGAGTTAGGTGG	alt_2615_missing	1	10	1	2	5	2	4	3	6	0
GCTTTCGTTGCGCCCC	alt_2615_missing	59	122	84	58	138	69	122	64	121	53
TAGGCGACGCTCGACA	alt_2615_missing	16	32	24	19	28	23	23	20	36	23
CTAGCAGACTTTCACC	alt_2615_missing	9	18	14	12	19	14	23	5	9	7
GCACACCTACGTCCTG	alt_2615_missing	12	52	17	17	54	23	49	18	43	15
CACGTCGCTGTAGGCG	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
ATCTGAGCGTTTTTAA	alt_2615_missing	3	5	4	4	9	6	13	2	6	1
TTTGTGTATTTTTCTC	alt_2615_missing	28	37	29	31	29	27	49	26	45	20
CGGCCCAATATCGCAT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
TAAGACTTTTATGAAG	alt_2615_missing	86	184	127	81	178	88	208	92	207	80
TTCCATCGCGAAGAAC	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
TCAGTTTTCACGGGAC	alt_2615_missing	75	148	89	70	129	79	137	64	144	73
CCGTTCGTAGCCCGAC	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
CCGCGCTCAGCAGCGC	alt_2615_missing	55	94	53	62	94	42	89	58	86	35
TTGGGTGGCTTTTTAG	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
GAAATCGCCGCACCAA	alt_2615_missing	36	54	40	27	73	40	67	37	81	39
GCGTTCCTGCGGAGGT	alt_2615_missing	39	76	43	52	78	47	77	45	82	43
CGTACAGCCAAGCGAG	alt_2615_missing	24	31	23	18	42	24	32	14	49	23
AGAACAGAGCGAAGTG	alt_2615_missing	0	1	0	0	0	0	0	0	0	0
CAGGTGAGTGTTGTTG	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
GTCATAAAAAGCGGAA	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
AGGGCAGCTATTAAAT	alt_2615_missing	37	66	60	54	61	34	59	24	75	29
CTCGGAGTTTGGATAG	alt_2615_missing	34	74	51	32	79	42	89	42	82	36
TTGGGTGGCTTGTTAG	alt_2615_missing	65	115	74	52	128	70	101	64	102	55
TTCGTGACCGCATTTC	alt_2615_missing	4	4	3	3	13	5	7	5	8	5
TCCCGGGGATCGAATA	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
TGCTGGAATCCGGTCA	alt_2615_missing	5	9	10	3	6	7	11	8	12	6
CTCGTAATACCTTTCA	ref_2615_missing	20	46	20	39	46	23	55	16	63	32
CTTTGCATCGCGAGTA	alt_2615_missing	4	6	2	4	5	7	5	2	9	7
GGTCTTGGTGACATCC	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
AAACGACTGGATTTTA	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
CCCACCGTATTGAGGT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
ATAGCGATCACGGCAC	alt_2615_missing	20	26	16	13	31	24	22	22	31	19
ATTGGCTGCCTTGCAG	alt_2615_missing	90	157	120	119	196	90	219	99	211	80
CCAAAACCTTGATTCG	alt_2615_missing	13	38	10	10	36	15	28	19	46	14
TACTTTCTGTATTTTA	alt_2615_missing	1	0	0	1	1	4	1	2	2	0
TATCGCCCTCGTCAGG	alt_2615_missing	4	8	4	1	4	2	10	5	4	1
GACAATGCCTTTTGAT	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
TGCGCTTCGCATCAAT	alt_2615_missing	264	458	334	285	473	266	518	278	521	243
GTAGGCACTGCGTTTC	alt_2615_missing	0	0	0	0	0	0	0	0	0	0
CGCTAGGCAAGGACAT	alt_2615_missing	7	6	7	0	13	2	12	9	19	7
ATATCTGGACGAAGTT	ref_5092_reverse	46	46	67	51	66	40	79	56	81	50
TGTTCACCTATGTCTG	ref_5092_reverse	9	13	16	16	19	15	17	11	15	7
AGTGTTGTTTCGTCCT	ref_5092_reverse	96	81	107	73	86	82	100	71	90	74
AATCTGGGCTGGTGGA	ref_5092_reverse	47	49	39	39	54	43	60	41	57	36
CGGCAAATCTTAGGTT	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGCCAGGCCTCTA	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTATCTGAAGAT	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CTAACCCCGTGAGACG	ref_5092_reverse	57	92	82	75	96	67	72	67	109	75
TATGCGGTGTCAGGCG	ref_5092_reverse	14	18	22	8	15	13	17	8	20	17
CGGCTGCGATAGCCAT	ref_5092_reverse	0	4	5	3	3	0	3	3	2	2
CTCTGGTTGTCTCGGA	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TGTCAAAGGGTACAGG	ref_5092_reverse	5	5	2	2	4	0	4	3	5	1
CGGACCGTTCCTAGCA	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGTAAAGGTGATA	ref_5092_reverse	80	119	98	92	117	82	129	63	119	73
AGCTCCCATCCGAAGG	ref_5092_reverse	17	21	16	18	18	17	25	15	28	13
TAATGATGTCGGAATA	ref_5092_reverse	43	34	63	49	51	40	57	38	47	64
TACTCATATTGGGCTT	ref_5092_reverse	324	385	406	366	366	356	427	315	442	297
GGAAAAATGACTACTC	ref_5092_reverse	65	67	70	78	70	72	96	53	87	64
AACAAGCGACTAAGCC	ref_5092_reverse	67	61	64	50	66	62	82	56	94	63
AACCCACATTAACGGA	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CTTATCGATGTTGTTT	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TTATAACTCTGCATCG	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTGAGCGTTATTA	ref_5092_reverse	17	62	33	35	45	32	38	24	43	29
GATTTCCGATCTTGCT	ref_5092_reverse	27	29	35	15	17	24	15	25	11	17
ACTATAAGGCAGTTGA	ref_5092_reverse	99	127	130	100	129	74	140	93	124	79
GGTTCTCGTTTTTACG	ref_5092_reverse	32	47	53	21	37	27	43	17	33	22
GTATTCATTCTCTCAG	ref_5092_reverse	15	24	14	13	18	25	21	22	28	12
AATCGTTCCCGAACGT	ref_5092_reverse	26	29	44	16	25	15	42	17	35	17
GTTCTTTTCGTTTCCC	ref_5092_reverse	100	87	91	85	104	74	103	83	118	79
CGGGTGTACTATCGTC	ref_5092_reverse	147	162	194	156	216	164	181	152	191	146
GCTCGCTACGGGCAAA	ref_5092_reverse	30	41	33	37	40	43	37	29	51	36
TATTTCGCATCATTGG	ref_5092_reverse	9	9	14	4	6	8	9	5	6	4
TCTACGGAGACGCGGG	alt_5092_reverse	21	20	18	16	26	28	40	21	18	25
GACCGCACATATGCTG	ref_5092_reverse	0	0	1	2	0	1	0	0	2	1
GGCATACGTTTGCCCG	ref_5092_reverse	15	25	20	7	23	14	22	11	20	10
TATCTTTATTGGGCTA	ref_5092_reverse	25	12	28	17	34	28	23	17	34	21
TCCCCGACGCCCCCGG	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTCCATGTTCTGA	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTACTAATGTAGC	ref_5092_reverse	11	9	1	4	10	4	12	6	3	6
GAGAACATTCCTGACA	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCGACGACCCCGG	ref_5092_reverse	12	45	10	5	54	13	43	6	55	5
TAGGTTCGCCAGGTGT	ref_5092_reverse	48	71	49	39	45	50	50	31	78	25
TGATTCAGTTGCAAAA	ref_5092_reverse	15	13	28	15	19	15	23	20	20	9
GCTGTGGATTCATGTA	ref_5092_reverse	61	88	90	73	84	70	88	47	98	67
TGGGCCACTTCCTATC	ref_5092_reverse	11	21	13	12	18	10	24	11	25	13
AGTGGGTTGCTCGCCG	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TACTCACGACCTTTCA	ref_5092_reverse	114	125	135	107	169	117	156	111	159	81
GATCCCTGGTTTTTAA	ref_5092_reverse	14	21	16	16	23	10	22	11	11	14
AAGGTATTGAGCGGTT	ref_5092_reverse	9	26	28	13	24	15	14	24	28	9
TAGAATTTTTGGATTC	ref_5092_reverse	44	46	42	31	44	27	36	30	42	32
GGCCCATGAGCGTGGG	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TCTATCTGTTGTCTTG	ref_5092_reverse	37	35	36	46	40	34	52	29	51	26
TCTTTGCACGGTTGTA	ref_5092_reverse	20	33	14	24	29	15	17	20	36	20
TAACGTTTGATCGTGT	ref_5092_reverse	54	50	58	44	56	42	63	50	64	37
GCGAATCGAAGTCCCG	ref_5092_reverse	10	16	12	10	27	7	13	4	11	5
ACGCCTTAGGGCAGAC	ref_5092_reverse	18	27	16	15	15	12	20	18	17	4
AAGGAATCAAATGCGG	ref_5092_reverse	15	15	11	15	15	4	11	9	21	7
TTACTTCGATCCGGAG	ref_5092_reverse	59	32	42	42	41	39	43	47	40	35
GACGCTACGTGAGCGG	ref_5092_reverse	112	141	138	105	147	120	161	91	160	95
TTAAAACCTAGAGTCG	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
AGCATTGTGTGTCAGC	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CTCCATGCGGTATGAT	ref_5092_reverse	63	61	55	61	70	48	63	38	54	42
ATGGCTGTTAGACGGG	ref_5092_reverse	68	86	82	66	104	68	91	67	89	51
CCGTTAAATCGTGTTA	ref_5092_reverse	7	9	9	6	9	14	13	5	18	7
CTTGACCGCTCTATCC	ref_5092_reverse	23	29	21	27	32	26	38	15	40	25
GCTTCAGCTAGACCAG	ref_5092_reverse	43	69	62	49	54	45	68	50	82	28
GGTCGCAGTATCATAA	ref_5092_reverse	0	1	0	2	1	0	2	0	0	0
TGGGCGTAGCTAGCGA	ref_5092_reverse	9	11	9	9	6	5	8	2	3	6
TTAGGCTGTTCATGTG	ref_5092_reverse	10	15	14	7	22	10	24	7	18	9
GAAAACGGGTTTTCGC	ref_5092_reverse	143	141	155	148	131	140	178	116	184	145
TACAGTTCACGGATCA	ref_5092_reverse	54	60	62	41	85	39	73	56	67	50
TCCCAACCGCTCTAAT	ref_5092_reverse	390	635	523	455	622	446	626	404	611	381
CTCTGCCCTTTTTTGC	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CTACTACGCGGAAAGC	ref_5092_reverse	103	105	96	74	128	85	127	101	131	91
GTTAGCTTGGAGGGCC	ref_5092_reverse	13	17	17	9	21	19	11	13	12	9
TCTCTTGCTTCCCAAT	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCAGTTAAGCGTT	ref_5092_reverse	28	44	46	32	34	13	30	19	33	19
AGTCGATTGGCCCATA	ref_5092_reverse	119	121	144	110	111	102	113	99	136	99
CATGTGAGCGAACTGA	alt_5092_reverse	39	43	41	33	61	35	56	32	50	47
AAGAAGCTCTCTTCCC	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAGGTAAGCTAGG	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
CCCATGGATGTAAACA	ref_5092_reverse	47	84	51	60	71	46	65	62	94	61
CCGGGCCTCCTATGGA	ref_5092_reverse	14	20	22	12	18	21	22	16	10	18
TTCACGATTAGCCATC	ref_5092_reverse	13	23	18	13	11	6	9	15	12	11
ACATGATGAGGTATTT	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
ATATCGCGGTATGCGC	ref_5092_reverse	1	1	2	0	2	7	3	2	0	1
TGTTAACGGGAGTAGG	ref_5092_reverse	24	26	34	25	31	17	21	31	15	19
TGTGTTTTAACAGCCC	ref_5092_reverse	5	4	6	5	3	4	5	1	9	5
CAGATAGAGTATTTTG	ref_5092_reverse	75	73	74	67	65	60	67	52	89	46
TTCCAATGGAATTCGA	ref_5092_reverse	127	163	161	143	149	119	154	129	151	105
ACGAGTAATTTTAGGC	ref_5092_reverse	21	25	27	23	23	14	22	26	24	20
GGTCTGGATAGCATTA	ref_5092_reverse	14	23	31	15	20	11	12	29	26	23
CAAAATGTTGTAATAG	ref_5092_reverse	136	161	164	138	151	149	172	128	164	124
GTACGCCTGATACGAC	ref_5092_reverse	51	80	74	48	57	76	60	59	73	58
GCTATCAGAGCGGCTT	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
GGGCATTTTAGTGCCT	ref_5092_reverse	0	0	0	0	0	0	0	0	0	0
GCACTTTGCATTCTAT	ref_5092_reverse	8	4	9	12	8	11	8	3	7	7
CCTGCAGTTTTTTCCC	alt_5092_reverse	47	106	93	79	86	70	90	72	121	76
CGTCCGGTACGGCTGC	ref_5092_reverse	53	56	54	48	44	37	66	48	56	38
GACCGTAACTTGTGCG	ref_5092_reverse	20	12	10	3	12	10	17	8	22	11
GATGTCAATTGTGGGT	ref_5092_reverse	108	117	110	97	130	96	126	77	140	115
CGATACTGTACCCAAT	ref_5092_reverse	19	25	12	13	13	14	17	18	15	19
TCTAGTTCATATGCCA	alt_5092_reverse	93	106	91	111	127	104	150	77	130	76
CTATCTGTCTTAAGGC	ref_5092_reverse	41	73	48	59	61	65	57	49	80	52
TACGGCGGCTTACGGG	ref_5092_reverse	77	83	102	90	113	108	110	66	94	73
GTGACGGCGATGACTG	ref_5092_reverse	329	329	371	314	328	269	350	310	329	329
TCCCGGTTAGCGAATG	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TTTAAGGGACCGCATA	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TCAGCGGCAAAGTTTC	ref_5744_new	120	263	182	147	283	159	269	152	292	141
CGATTTTGCGCTTAGC	ref_5744_new	0	0	0	0	0	0	0	0	0	0
CAAGGGTGTCGATTCG	ref_5744_new	18	46	29	16	42	24	37	16	47	34
TTCGCCCAGGCTATTA	ref_5744_new	28	63	36	39	73	38	68	42	79	28
GCTTCGATATCGTAAT	ref_5744_new	64	89	41	38	103	48	109	59	95	47
TAATCATAGCTGGGGG	ref_5744_new	22	33	39	15	49	19	43	26	38	16
TATATTTCCGTAGCCT	ref_5744_new	53	125	78	57	101	67	114	54	117	68
GTACCCCGCGTGCCAT	ref_5744_new	10	29	10	14	30	11	36	9	30	8
CTCCGAACTGAGCTCG	ref_5744_new	14	30	7	16	27	13	36	10	22	10
GACCTTACTGCACTTA	ref_5744_new	13	15	11	15	15	16	19	6	23	6
TGGTCTGCGTTCTTCA	ref_5744_new	0	0	0	0	0	0	0	0	0	0
ATAAGCAAAAGCAGCT	ref_5744_new	23	29	19	23	30	22	30	11	44	18
AAATGAGATATGTTCT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
CACTTCTACATAGATG	ref_5744_new	9	7	7	5	12	3	9	2	5	7
GAGATGCAGGTAGAAC	ref_5744_new	0	0	0	0	0	0	0	0	0	0
CTGGTCGTATTGGGAG	ref_5744_new	0	0	0	0	0	0	0	0	0	0
GTCTTCATCTGATTAT	ref_5744_new	10	12	8	4	19	14	10	5	26	4
GGCTATCCAGATTACT	ref_5744_new	40	68	41	52	66	37	65	44	83	31
TAAACCGCCTTCGTTT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
CTGAGGGAGCACATAT	ref_5744_new	31	54	28	18	46	25	42	18	49	23
CGCCTGCTGCCTTCGT	ref_5744_new	23	34	36	14	23	33	48	18	32	15
GTCGACAGCGGGGTCG	ref_5744_new	18	22	14	10	32	16	28	19	29	19
CGGTGTCTAATTGTGG	ref_5744_new	5	7	8	8	20	7	14	13	18	11
ATGACCGCATCGCCTG	ref_5744_new	28	49	33	37	52	26	35	29	60	26
TTGTTGGGCTAGAACT	ref_5744_new	44	103	41	44	101	66	95	42	95	35
TCCGACAGGCAGTTCG	ref_5744_new	0	0	0	0	0	0	0	0	0	0
CCCTCAGATGATGTGT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
AGCCGTAGGAATCTGG	ref_5744_new	7	24	11	15	20	14	21	5	26	11
TCGCCTTTTTCACGAT	ref_5744_new	104	189	141	134	221	97	227	123	263	100
TCCAAAAAGTGGTAAT	ref_5744_new	7	18	18	12	16	8	21	15	35	11
CGTCTTCAGCGATTCG	ref_5744_new	0	0	0	0	0	0	0	0	0	0
CGATGGATATTTCGGA	ref_5744_new	13	20	10	7	17	11	13	6	15	6
TTTCCCGTAGAGCTTC	ref_5744_new	17	28	39	10	36	16	39	16	29	11
CCCCGTTCGTTGCCTT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TTTCACCCATGCTATC	ref_5744_new	13	25	20	18	41	14	39	19	35	20
CTCTGGTCGGCATGAT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
ACCCTCTTGTACAATA	ref_5744_new	9	11	11	5	18	6	19	9	20	11
TGCTTCGGCCCGGGCT	ref_5744_new	4	8	3	1	3	9	6	2	6	4
AAACATTTACCCCTCC	ref_5744_new	0	0	0	0	0	0	0	0	0	0
AAGGAGACGTTGGGTC	ref_5744_new	0	0	0	0	0	0	0	0	0	0
GAATCGGGTCAAAACG	ref_5744_new	2	3	3	0	6	2	2	4	5	3
AGTTTCCTTCTTCTTC	ref_5744_new	2	3	0	3	1	3	1	3	2	6
GTGCAAGCTAAAGTTA	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TAGCAATTTCAGATCT	ref_5744_new	19	12	14	12	20	17	28	10	16	9
TAGTTAATCTTAGCGT	ref_5744_new	0	3	1	0	1	0	2	0	2	1
CAGTCTTACTGATGAG	ref_5744_new	17	46	23	16	50	29	45	19	43	24
GCAGTCGCACATTACG	ref_5744_new	4	10	6	13	23	6	13	6	16	8
GATATGATGTCTAACA	ref_5744_new	13	11	4	4	6	7	16	8	9	6
CTATGATTCATATTAA	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TTGCGTGGTCTGCCTG	ref_5744_new	5	14	8	6	11	7	20	6	15	7
ACTTGTGCACGTCTTC	ref_5744_new	33	59	45	33	90	52	95	55	104	34
GTGGTCCGGATCGTTG	ref_5744_new	20	40	33	30	44	15	43	19	49	17
ATCTGGTTACTTGGGG	ref_5744_new	11	56	28	16	39	33	37	25	45	22
TCAGCGGAAAAGTTTC	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TGTTCACTGTATTTGG	ref_5744_new	9	24	15	5	29	4	23	13	25	7
TCGCAAATCGGAACGC	ref_5744_new	2	12	5	2	10	7	7	5	8	4
AGAGCTTCACTTCTGC	ref_5744_new	5	18	3	6	14	8	16	10	24	14
CGGGCAACGTGCACTC	ref_5744_new	1	20	4	1	19	9	11	3	12	5
GACCGTAAATCCATCG	ref_5744_new	164	205	171	120	209	125	237	136	229	113
GCATTGACTTATGTTA	ref_5744_new	5	13	18	7	20	10	26	5	24	11
GAAACCGCTAGGGTTG	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TGGAGTACTACCTCCT	ref_5744_new	70	129	61	81	112	53	165	71	134	51
GTTTAACGATGTCTAA	ref_5744_new	18	39	26	23	26	19	22	13	38	18
GTCTACCTTCAACACA	ref_5744_new	0	0	0	0	0	0	0	0	0	0
GGATATACAGACACTC	ref_5744_new	65	121	53	47	124	53	133	46	169	45
ATAGCTGGCCGCACCC	ref_5744_new	24	39	22	22	34	15	38	21	39	14
TCGATTCGCGTGACAT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
AAGATGGAATTAGAAT	ref_5744_new	23	29	19	10	29	14	34	23	34	18
TTTCTAGTGTTAGTCC	ref_5744_new	0	0	0	0	0	0	0	0	0	0
GAGTGTTATATCTTTT	ref_5744_new	11	17	8	7	13	3	11	6	19	6
TTTGGGGGCGCTTTAG	ref_5744_new	21	41	19	18	31	20	44	9	32	15
CATTATTTGGGGACCG	ref_5744_new	0	0	0	0	0	0	0	0	0	0
GCTTCCGCTTAAATCT	ref_5744_new	16	23	10	9	30	12	20	8	25	13
GATGACAACCGGTCCT	ref_5744_new	48	90	49	52	100	42	82	43	86	43
CAGTTTGCGCACTCCA	ref_5744_new	21	44	25	20	45	19	65	21	60	12
CTGCGATCCGCAACCT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
GTATATGTAGGCGTGT	ref_5744_new	62	93	48	39	117	39	102	33	112	49
CAGGCAAGGTGGTGCC	ref_5744_new	4	18	5	5	11	3	8	1	10	4
CGGTGGTAATAAGTGG	ref_5744_new	29	73	31	30	89	34	103	25	106	24
ATTGTCCGAGGTCTGG	ref_5744_new	28	60	37	27	62	21	69	28	73	30
GTGTTCATGGTGCCAT	ref_5744_new	24	58	36	30	57	23	88	21	78	38
AGCGTATGCATGAGGA	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TTCGTTGTGTCCATGG	ref_5744_new	6	22	24	9	17	19	16	10	31	14
GTCAGGTCCGCGATGG	ref_5744_new	0	0	0	0	0	0	0	0	0	0
CCACGTGATGTAATTA	ref_5744_new	0	0	0	0	0	0	0	0	0	0
GGCTTCAGATGAGTAC	ref_5744_new	4	18	6	5	15	8	9	7	11	6
TATAGGCTCCGCCTAC	ref_5744_new	38	90	47	40	81	40	80	32	90	31
GTAAAGTACACCTTCT	ref_5744_new	0	0	0	0	0	0	0	0	0	0
TTCACTGGTCTTGAAG	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TAGAAAGGGTACGAAG	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TTTGGTTTAGGTAAGG	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
GACTTTCCTCGAAGCG	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TTCTGAATATTGTATA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
GTCTACGTTGGGTGTG	alt_4247_missing	2	8	2	7	4	1	10	1	7	2
TAGATGTTCATTCGGG	alt_4247_missing	6	14	10	13	16	14	19	10	24	9
TACTGTCCGTGCAGTA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
CACCGCCCGCCCAAAA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
AGCTGTTCCTAGAGGT	alt_4247_missing	0	5	3	1	5	2	4	8	2	3
GCACATTCTCACGTCA	alt_4247_missing	8	7	5	4	7	6	8	7	10	2
AAGTGCGGTTTCTGCT	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TGAATTATACCCTGCT	alt_4247_missing	24	39	24	17	22	19	39	17	35	18
CACAACCCTTGCATCT	alt_4247_missing	1	0	1	0	2	0	1	0	1	1
TCTCGCGTTATACCTA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
CACGTACCTCGGAGTG	alt_4247_missing	7	22	13	12	26	9	25	6	29	4
TTCGATACTCTGTATT	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TATGCCGAAGAGTTTC	alt_4247_missing	14	21	10	29	12	19	28	24	24	10
ATAAAGAATTGGAGAA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TTTGCGATGTCAGTTA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
ACGACTGATGTAGTGC	alt_4247_missing	5	12	3	8	16	6	11	4	6	5
TCTTTTATTAGGTTAG	alt_4247_missing	30	69	36	35	70	24	71	37	61	38
TTTCTCCCTCCGGCGA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TCAGAGCAGAGAGTCA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TCTCCTCGGACCTTAT	alt_4247_missing	5	8	7	3	10	4	8	7	12	8
GCAGAGTTTACATCAA	alt_4247_missing	4	11	5	10	15	10	19	8	20	7
CCTTAGAACGTTTTTA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
ATCCGTCAGTCCCTGC	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
CGTCTGAGTATCCACA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TATTTTTAGTCGTGCA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
ATAGTAGACTCTTGGT	alt_4247_missing	10	4	6	12	20	6	15	8	24	5
CGCGACAGGAAATAGT	alt_4247_missing	10	9	12	7	11	10	19	8	12	10
TAAGTGTTCCCTCTTA	alt_4247_missing	2	6	4	1	15	7	8	6	14	7
TTTCGCGTCTCGTATA	alt_4247_missing	3	3	1	0	0	1	3	0	4	2
AGATTAGCTGGAACAG	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
GACCTAAAGTAAGGAA	alt_4247_missing	0	0	0	2	3	0	4	0	4	0
GTCGTGCATCGTTATA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
ATTGAGCCGTGGCTTT	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
CTATGTTTAGAGTTGG	alt_4247_missing	11	31	22	18	38	16	29	10	26	16
AGAGGGGTATTCGGCG	alt_4247_missing	6	10	10	4	12	6	12	5	11	4
GGTATAACTGGCACAC	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
ATGCGTTTACCACACT	alt_4247_missing	11	11	12	14	19	9	13	3	12	10
CTTACGCTATGAGGTC	alt_4247_missing	11	25	17	12	18	7	23	1	27	7
TGTTCCATGGCCTCCT	alt_4247_missing	6	12	5	4	12	5	9	10	10	5
GTATGTTTGCCTTCCA	alt_4247_missing	3	1	0	1	3	1	1	0	2	0
ACGCACGCCCACCATT	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
GCTTCATGTTGCGATG	alt_4247_missing	49	76	50	42	82	56	72	45	89	56
GAACTTAGCAGCGAGT	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TAGCACACCATCTCAA	alt_4247_missing	32	62	37	19	37	26	41	38	50	26
AAAGGGTTGTGTATGT	alt_4247_missing	17	23	16	10	32	8	20	13	23	7
TATTCATTTCGGCGCC	alt_4247_missing	21	12	19	16	23	14	21	15	17	12
ATCCCAACTACCCATC	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
GACTCTTCAGCACTAA	alt_4247_missing	53	54	62	58	83	50	75	38	88	53
GCCAACAACATCACCC	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
GCGTCCAAAGGTAGGG	alt_4247_missing	10	27	16	12	12	11	26	14	33	10
TGAGTTTGCGCTCGGA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
TGCCATCCCCGGCAGA	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
CTGTTACCTTTAAACT	alt_4247_missing	14	25	16	14	21	12	25	7	23	11
GTCACGTTCCGTCGGT	alt_4247_missing	0	0	0	0	0	0	0	0	0	0
GGAATTTTCACTGGGT	ref_3968_RC	3	20	9	7	10	8	16	5	16	1
GGCCAGTTTCCGGCCC	ref_3968_RC	70	142	77	66	150	72	149	58	130	57
AGGATGCGTTGGAAGT	ref_3968_RC	20	32	27	21	44	30	45	17	42	20
TGACCTTAGATATGAT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TGGGCGCAGTGTATCT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TTTGACTAATCGCGGG	ref_3968_RC	33	94	52	49	89	54	94	56	101	52
TTTTTACGGACGGCTA	ref_3968_RC	7	13	7	10	9	8	19	8	16	6
GTGTTTTGTCCTTCTT	ref_3968_RC	4	6	8	8	7	3	6	1	7	3
TGCCGTGTTGTTACTT	ref_3968_RC	5	14	8	6	12	6	15	15	17	7
GCTTGACCGGAAGGAA	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
ACACGCGCGCCATACC	ref_3968_RC	30	84	46	29	95	28	71	25	118	23
CTCACCACTGCATCGA	ref_3968_RC	7	9	9	13	14	11	14	10	20	5
TTATTAACTCTGCAGT	ref_3968_RC	47	139	67	70	126	54	118	56	120	52
AATTGGTCTTGAGTGT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
GTATAACTCGTCTCGA	ref_3968_RC	1	3	0	2	9	1	6	1	4	2
TGCTTTGAATGCAAGT	ref_3968_RC	29	47	46	15	67	33	60	29	60	19
CATTGCTTCAGTTGTT	ref_3968_RC	74	121	90	53	128	62	161	60	148	56
CTTGTAGGCAAATCGT	ref_3968_RC	8	23	16	15	35	10	34	22	36	23
GGGCATGCACTGTGAG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
ATATGTGCTTCGGATT	ref_3968_RC	21	60	31	15	36	13	47	20	44	16
CATTTTATCCCTGTTC	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTGGTGGAGAGG	ref_3968_RC	24	41	23	21	42	21	45	21	38	27
GCTGCGGAATCTGGGA	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
CACGTCCCGCTCGCAC	ref_3968_RC	15	55	35	29	49	31	57	16	57	21
TGGAGCCTATGATTAG	ref_3968_RC	6	5	3	2	6	2	8	3	8	10
TATAACGTTGATAGTG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TCGACCTGGGGATCCC	ref_3968_RC	39	75	39	36	80	27	74	29	90	42
GGGTTGTCTCGTCCTG	ref_3968_RC	122	251	157	102	214	97	245	91	267	122
TATTGTAAGCGTCTTA	ref_3968_RC	13	25	8	10	23	11	17	8	23	8
ATGTCCCCATCTGTCT	ref_3968_RC	14	36	19	16	35	18	31	19	22	24
ATGCGCCTAGGATTTA	ref_3968_RC	7	19	10	3	13	9	24	9	20	7
CAACAGTACAAATTGT	ref_3968_RC	9	8	3	1	19	4	9	4	20	5
CCATCCGAAACCGTTT	ref_3968_RC	29	48	33	24	49	22	53	31	73	20
TATTTCGGATTGGTTT	ref_3968_RC	2	3	7	3	2	0	3	0	9	0
ACCGTTAGTCGCCGCC	alt_3968_RC	3	1	1	1	5	2	5	5	1	0
TGACAAATGGTTATAC	ref_3968_RC	8	26	19	15	25	17	20	10	25	13
TATGACCAAGGTTGTC	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTGATCGGTTTA	ref_3968_RC	5	5	5	5	9	3	6	3	5	3
TTCCGCACGTGTTTCG	ref_3968_RC	6	17	11	4	11	10	18	7	6	5
CGTGTTCCCTGGCTTC	ref_3968_RC	4	6	2	3	6	4	3	2	4	2
CGTCACTGGATTGACT	ref_3968_RC	19	29	14	15	38	16	33	16	45	18
GCCCCCTGGTGTACTG	ref_3968_RC	72	132	98	97	145	69	161	76	167	77
TACGAAGATGATTTTG	ref_3968_RC	18	21	27	13	32	11	23	15	33	15
AGCGGCTATGTTACCT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
CAGCAAGCAACGTACG	ref_3968_RC	3	15	9	9	15	6	14	4	13	2
GACTTCCTGCTCTCAC	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
CCGTGACAGGGCCACT	ref_3968_RC	15	42	13	8	31	14	29	15	46	14
CGTGTACTCGCCGCTG	ref_3968_RC	37	68	49	37	92	47	73	32	81	44
CCCCCTCGACGTCCGC	alt_3968_RC	1	11	2	5	8	1	5	4	10	4
ACCTCAACCTCACCGG	ref_3968_RC	10	36	7	7	21	16	31	11	28	12
GTACTGTCTCATCCTA	ref_3968_RC	6	25	19	10	44	11	34	12	33	7
GTGGCCGTATTGACTC	ref_3968_RC	5	29	16	16	38	13	31	19	27	10
TAACGGCGTCACAGCA	ref_3968_RC	35	47	34	27	35	28	46	38	52	22
TGCAATGGATGCCCAG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
ACCACGTTCACGGCCG	ref_3968_RC	62	155	89	70	169	61	156	56	164	63
ACTCAGTGTCTAGTAA	ref_3968_RC	79	175	106	82	175	64	198	84	159	49
GTTATGTTTCGGGGTG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCAGGGTCCGCT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
AGTATAGGCGTCACTG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
ACAGCTTGCACAAATT	ref_3968_RC	1	3	1	0	3	1	4	0	6	1
TTACTTCGTTTCGTAT	ref_3968_RC	5	8	10	9	11	6	6	6	12	3
CCCGAACTAGCTTTTG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
ATAGCCTAATCTGGGC	ref_3968_RC	35	96	55	42	75	41	104	39	94	35
ATCTGATTCGACGGCA	ref_3968_RC	13	13	9	6	11	5	12	5	9	8
TAATGGGGTTTGTACG	ref_3968_RC	27	58	37	33	57	31	68	27	62	32
CATTCCCAGTAGGACA	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TCCTTTATTGCAGGGC	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TGTTACAGATGGTGTG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
AAAACTTAGGGCATTT	ref_3968_RC	34	59	24	28	63	22	64	25	46	19
AAGGTATGCGTTCTAG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTGATACGTCAT	ref_3968_RC	149	261	188	162	242	152	286	137	242	141
CCGAGCGGTTGGCCCG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TCATGACCTTCTCTAT	ref_3968_RC	22	26	25	13	29	10	20	13	31	9
TCATGCTTTTTATCTC	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
CTGTTGCATGCAAGAA	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
CGCCAAGTGCTGGCTG	ref_3968_RC	20	44	22	15	55	22	57	24	48	14
ACAGCTTCCCAAGCGC	ref_3968_RC	5	8	7	3	15	1	10	1	11	0
CCTTAGGTCACTACTT	ref_3968_RC	22	53	31	31	71	24	58	27	76	22
CGTCTGTCGTCCTTAC	ref_3968_RC	5	47	19	12	59	13	54	19	49	7
CCTCCCTTCAAGCTAA	ref_3968_RC	10	38	20	15	45	16	37	17	36	13
TGACCCCGGTTTTCTT	ref_3968_RC	22	40	37	22	63	26	35	17	52	25
GCGGCCGACGTGCAGA	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
GTTGACAGTCTATCGT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
AACTCCCCTTACGCTG	ref_3968_RC	8	43	15	9	47	3	66	6	48	2
GGGTAGTCTCGTCCTG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TCTCAATTCCGTTTTC	ref_3968_RC	12	22	25	20	23	16	32	11	28	13
GTGTGACGCAATTACA	ref_3968_RC	1	6	6	7	4	10	8	2	6	8
GTGCGTGGTGAGATGC	ref_3968_RC	15	17	11	10	13	5	24	19	17	13
CTGATTTGTGTATTTA	ref_3968_RC	12	35	18	15	29	13	42	6	42	15
CTGCACAAGCCTTTGA	ref_3968_RC	36	80	41	38	74	33	64	31	71	32
GCAATGGTATAGGCTG	ref_3968_RC	32	80	37	24	61	45	68	21	70	27
TTTCTTTACATTGGTA	ref_3968_RC	76	172	91	92	130	62	173	62	179	67
ATCTCTGAGTCAAAAC	ref_3968_RC	9	10	3	7	13	10	14	12	8	5
TGTCTTGCAGGGAAAA	ref_3968_RC	9	18	12	9	18	8	17	9	22	11
CCTGATAGAAAAGCCT	ref_3968_RC	10	35	5	9	23	16	23	10	32	8
GACATGTTCTAAGGCT	ref_3968_RC	5	13	4	6	12	1	10	2	8	3
GGTGAGGTAATTATGC	ref_3968_RC	15	26	10	6	26	13	27	12	30	14
GGCGTGCGGGGGATTA	ref_3968_RC	39	92	50	32	82	40	72	33	99	41
CGCTTCGTAGGCTATA	ref_3968_RC	62	107	69	72	128	78	136	66	133	61
GTGGCGCTCCTTTCCG	ref_3968_RC	29	62	39	22	70	33	67	33	81	38
ACGCTACCCAAATGTA	ref_3968_RC	15	85	33	19	63	19	56	21	79	18
TAAGCAGTACATGCTT	ref_3968_RC	29	74	54	35	83	35	74	38	118	40
AATTTGTAGGCCATTG	ref_3968_RC	43	108	59	57	131	53	122	50	108	52
GTCGGAGCTTTGAGCG	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TTGAGCGGCTAACAGC	ref_3968_RC	40	60	39	37	62	29	65	31	76	31
CTGTCTGTCAACTCGC	ref_3968_RC	14	65	29	19	77	15	51	20	52	15
TTTCACACGTCTAGGA	ref_3968_RC	10	41	25	16	39	22	33	15	45	17
TACATCCTCAGGACCC	ref_3968_RC	28	51	24	19	48	24	53	26	61	21
CGTGCTACCTCTGTCG	ref_3968_RC	0	9	4	2	2	1	3	3	1	2
CCTTCACGTTCCATGC	ref_3968_RC	11	23	16	13	28	17	22	16	30	11
TTGTTCGCTTGTTCTT	ref_3968_RC	9	16	17	17	29	11	31	14	19	17
GTTGTTTCGGCAGGGG	ref_3968_RC	7	16	14	11	24	8	17	5	23	8
TCAGATGTCCTGGAGC	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
TCTACGCAGGCCCTCC	ref_3968_RC	17	20	20	20	36	13	37	12	25	10
AAGTCCTTTGCGCCTC	ref_3968_RC	11	13	12	9	15	0	16	4	24	11
TCAAGTAATCATACTG	ref_3968_RC	36	53	34	34	54	32	72	36	70	27
TCCGTACGACGTAGTA	ref_3968_RC	47	74	53	47	76	35	92	28	96	40
TAGCATTGGGACTCTT	ref_3968_RC	6	13	9	4	8	4	16	7	24	6
AATTCGGATAAGCCGG	ref_3968_RC	9	22	6	8	13	14	5	0	8	5
GCGTCGCGAAAGATTC	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
AGACTCCAGTTCTTTT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
CGTACCAAGTCGCAGT	ref_3968_RC	0	0	0	0	0	0	0	0	0	0
GCTCAGTCCGATGGCG	ref_3968_RC	137	265	153	121	263	105	256	145	260	128
TTCAGGGGTCTTTCGT	ref_3968_RC	7	12	8	6	24	12	18	5	32	8
CTTCTAGATCCGGGTC	ref_3968_RC	10	11	8	7	20	7	22	12	29	10
TGCTCAACTCGCAAAT	ref_3022_upstream	28	44	39	30	24	20	29	32	40	18
GTGACCATGTGTGTTA	ref_3022_upstream	3	9	3	2	4	2	4	1	5	0
TCCGGAAACTCCCTAA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCAGTCTGTTCTT	ref_3022_upstream	50	59	70	54	81	65	51	44	56	43
GGAAAGCATTTTTTCG	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
CTTGAGTTTTATACCA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
TCAGATCCGTCGCTAT	ref_3022_upstream	6	10	5	5	5	2	12	1	5	9
TGGGTCCATTGTATAG	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTACGACAGTTAC	ref_3022_upstream	66	96	102	79	115	75	85	73	102	63
CCACTCGGTACGATAG	ref_3022_upstream	23	106	32	34	106	30	97	35	78	34
ACGAATCACGGTCTTG	ref_3022_upstream	41	36	50	41	49	37	31	40	51	31
CGATCTCGTGTTCGGA	ref_3022_upstream	11	13	18	18	15	8	16	21	18	11
AGTAAAGTGCCGGTAT	ref_3022_upstream	19	39	23	29	32	26	23	21	28	19
TACCCGCCAAACTGTA	ref_3022_upstream	79	86	104	100	73	66	99	76	106	82
CAGCTTGGTTGTATTG	ref_3022_upstream	10	18	11	4	20	6	18	13	24	10
GGCCTGTATTTAAGGC	ref_3022_upstream	102	131	109	93	107	126	127	89	130	86
ACTCTTACATTCGTCA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAACTCTTCCTTC	ref_3022_upstream	14	24	23	22	22	15	17	10	19	26
CTGAAAATTCTGGTAT	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GTACCTCTTATCGTAG	ref_3022_upstream	30	58	43	31	46	31	72	26	55	32
GACCGTAAACGTGATG	ref_3022_upstream	17	35	26	20	36	22	31	16	24	20
TTCCCCGGTCGGTTCC	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GTCATTACGCCGCCTA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
TACGCCAAGACACGTG	ref_3022_upstream	34	43	55	47	35	38	51	42	73	47
CGTTATAATTTCATGC	ref_3022_upstream	19	27	21	27	19	17	17	21	40	26
CTCGAGGCTTGTCATT	ref_3022_upstream	20	19	18	12	15	16	21	11	20	16
CCAGAGGTCTTCTGTA	ref_3022_upstream	14	14	18	26	31	11	21	13	29	10
TTGCTTGGCCGATACC	ref_3022_upstream	9	20	14	16	16	12	9	16	21	4
GGGCTTCCATCATTTG	ref_3022_upstream	24	22	17	15	26	9	23	16	27	15
TTTATAGAATCTCATC	ref_3022_upstream	9	13	17	13	22	7	6	12	11	10
ACTTGAAGGTTTTTAT	ref_3022_upstream	86	86	116	96	102	83	93	85	91	66
ACTCGACTCTGTTTTA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTCTGTTATTTCT	ref_3022_upstream	20	12	31	30	20	10	12	28	11	22
TGTAAGCCTGACTGAG	ref_3022_upstream	18	24	14	16	14	15	25	8	33	13
GTAAACTCACCGTCTC	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTGTACCCGCTA	ref_3022_upstream	18	26	36	29	36	23	36	33	30	20
CACTCGCGCTATGTAG	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTTATTGAAAACT	ref_3022_upstream	136	125	140	127	146	115	129	119	147	102
TACTGGCGAGTTACTT	ref_3022_upstream	26	18	17	17	21	16	25	12	21	15
CAAGAGCTACAAGCAA	ref_3022_upstream	131	112	141	134	146	132	163	117	165	121
CTTCCGCGGAAAAATC	ref_3022_upstream	5	3	17	5	3	6	11	5	9	8
CGTATTTCGCAAGTAT	ref_3022_upstream	50	38	55	54	33	45	43	54	48	37
CCTGGCATTGCTGCTC	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GTACCCTAACGAACGT	ref_3022_upstream	60	42	49	31	42	43	53	37	47	18
GGTAACCTAATCGTAA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GGAGAGTCTATTCTCT	ref_3022_upstream	102	120	125	98	126	86	143	87	140	111
GACTATCCGCTCACAG	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTTTTCTCCTCCC	ref_3022_upstream	21	26	25	22	12	14	20	22	22	23
TGGGACTTAGGTAGCT	ref_3022_upstream	5	3	1	1	3	3	1	0	2	0
ATGGTATCTAGCCCTA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGGTGGTATTCAC	ref_3022_upstream	85	78	100	75	101	90	75	62	80	79
TCTGCCATGGGACCTC	ref_3022_upstream	6	13	2	6	4	3	4	5	5	7
ATTTCGTCTGGTTTCG	ref_3022_upstream	58	69	49	78	62	59	71	49	73	54
ACTCCAGTATACTCGC	ref_3022_upstream	7	23	13	13	16	9	12	12	21	8
TTGATATGTGGCCCAA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTATTGGGAAGG	ref_3022_upstream	1	2	7	4	0	2	4	2	3	0
AACCTAGTCAACACCG	ref_3022_upstream	141	224	147	121	228	108	259	101	267	106
GATTCTGAAACTGTAC	ref_3022_upstream	19	18	18	14	19	10	28	8	18	12
CTTCTCTCGGTGATTT	ref_3022_upstream	2	7	5	4	4	3	3	1	7	0
AATTTGCATTGGATTA	ref_3022_upstream	15	34	15	19	32	17	25	12	27	9
TTTGCTTAGCCCTTGA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
CTACGCGCATTCCTCC	ref_3022_upstream	27	39	26	32	27	24	38	29	37	21
ACTACTGTATTAAGTT	ref_3022_upstream	89	143	117	88	131	106	152	102	135	98
TCTATTCTATTAGACA	ref_3022_upstream	197	235	264	216	264	203	238	164	285	162
GTTCGAATGAGTGGAC	ref_3022_upstream	17	18	27	20	24	19	25	22	19	24
TACTTGTCCTGTATGT	ref_3022_upstream	10	13	10	8	15	13	12	13	17	3
AGGGCTCCAAGGTAAC	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTAACTTACGGGG	ref_3022_upstream	45	56	77	68	61	53	45	48	64	46
TGTACGGCACGATTAT	ref_3022_upstream	311	346	385	309	312	358	325	266	388	276
ACGGTGGTTGACTACT	ref_3022_upstream	36	46	53	44	54	47	52	34	54	37
CCGATTTGAGGAGGTC	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCTGTAAGACTGC	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
ACTTACGCAACTCTAG	ref_3022_upstream	14	34	33	26	45	32	39	27	35	21
CATTCGGTTTTCAATC	ref_3022_upstream	30	37	35	39	43	45	52	39	55	30
TTGTCTAATACAATTG	ref_3022_upstream	4	7	6	6	6	2	7	7	12	5
AGATGTAAAACCAGGT	ref_3022_upstream	5	4	11	7	11	5	9	6	13	5
TCTTGAAGTGGATATA	ref_3022_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGTCTGCTTCTTG	alt_2011_fdr	5	12	20	17	13	11	17	14	20	13
TGCCCAATTTCTCCGT	alt_2011_fdr	16	15	17	13	28	9	25	18	20	19
ATATTAAAACTAGCAT	alt_2011_fdr	15	6	9	12	10	7	24	6	10	8
ACCTTCGCCCAAAAGG	alt_2011_fdr	44	74	71	60	81	38	71	46	61	48
CGCTAGTATTACAATA	alt_2011_fdr	19	40	40	26	50	20	43	31	42	22
CGATCTCTGTTCTCAT	alt_2011_fdr	519	553	613	527	566	483	600	491	553	472
GCGTCCTGTCTAGGAA	alt_2011_fdr	286	389	335	272	380	274	398	285	447	299
CAGCTTTATATAAATA	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
GGAGGTAGAATATAAC	alt_2011_fdr	27	26	39	43	30	27	31	35	20	28
AGGGCTGCGGGGGGAA	alt_2011_fdr	11	12	15	15	15	16	25	11	13	16
CTCAGGTTATATCTCA	alt_2011_fdr	5	4	3	6	2	0	3	5	7	5
CGGATAAAGGGCTTCG	alt_2011_fdr	63	109	119	95	81	89	116	69	132	83
ATACTTCTTAAAGCTA	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TAATTTATATGATGAG	alt_2011_fdr	35	58	58	35	59	36	38	36	46	38
GCGTTACGGACGTTAA	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGGTCTGCAGGCC	alt_2011_fdr	15	21	21	11	39	10	25	9	21	13
TTTTTACTATCGTTGT	alt_2011_fdr	85	93	113	84	100	89	115	80	100	62
AAATAGCGGGAATGGT	alt_2011_fdr	40	45	36	42	37	56	63	37	42	31
TCAGCACTGGCTGCGT	alt_2011_fdr	15	22	11	13	21	11	9	16	31	15
GGCCACGTTATACTCC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TATCGGTCATCGATCT	alt_2011_fdr	101	98	97	98	102	77	87	84	83	77
CGATGAGTACTCATTA	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTCTCCGGCTTCA	alt_2011_fdr	24	26	17	17	31	15	25	18	16	13
TTTCGATTGCTAAAAG	alt_2011_fdr	8	13	6	10	5	7	13	4	5	8
GTCGCGGGATGTGTAC	alt_2011_fdr	1	2	1	2	1	2	3	0	0	1
CTCTTCTGTGCGCGGA	alt_2011_fdr	128	128	144	114	109	108	108	119	119	116
CCATACGGGTAAGAAG	alt_2011_fdr	3	10	1	4	13	4	12	5	17	2
ATAACTTTCGTCAACA	alt_2011_fdr	23	27	43	23	38	24	40	18	35	26
CTGATCTGGATTCAGC	alt_2011_fdr	31	31	25	39	33	28	39	26	41	28
GTTCACGGCCTATCTG	alt_2011_fdr	8	6	13	13	11	13	9	8	14	9
GTGACCCTCGGTAAGA	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
GGGGCAGCTACAGCGA	alt_2011_fdr	35	17	31	26	32	19	35	28	28	26
ACTCAGTTAGCGATGC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CTACCACGTAGCATCA	alt_2011_fdr	31	43	20	23	36	27	46	20	44	27
TGAGGAGCGGACCCGC	alt_2011_fdr	2	3	6	4	6	3	5	5	3	1
TTTAGTGTTTGTATGT	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TACGGGTTGACATCTA	alt_2011_fdr	19	15	16	14	23	16	19	8	22	10
TTGGTACGCTGCCCGA	alt_2011_fdr	15	20	27	15	27	15	30	7	17	21
TACCTTTTTGCGTTTA	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTGTGCTCTCTC	alt_2011_fdr	14	8	11	4	12	7	8	12	7	15
AAACGGCGCTCTTTTA	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CATACTCTATTGGCAC	alt_2011_fdr	25	47	40	20	27	14	39	30	23	16
GTTCCACACGGTGAAG	alt_2011_fdr	35	37	30	23	34	25	46	30	43	26
CTTGTATAAGTTTTTG	alt_2011_fdr	125	169	150	154	175	139	171	137	209	122
CTTTAGACGTGTTAAT	alt_2011_fdr	2	8	6	7	11	1	10	2	4	0
AATGTGATATTTTCAA	alt_2011_fdr	35	45	50	52	29	48	48	41	41	37
CAAATCTAGTTTACGG	alt_2011_fdr	26	33	36	29	28	30	30	22	29	14
ATTTAAATTCCTTACT	alt_2011_fdr	48	47	58	38	51	43	44	25	57	49
TGGAACATATGAGGTC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTAAGGTTTGTAT	alt_2011_fdr	50	63	70	44	61	40	71	43	81	43
ACTTTTTGGGGTGAGG	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTCAGGTTGAAAC	alt_2011_fdr	24	52	41	29	44	17	51	15	50	26
CTCTAGCCACCCCTCG	alt_2011_fdr	21	33	29	29	68	22	55	23	79	23
GACAACGGCCTGGGCA	alt_2011_fdr	7	7	8	4	8	10	2	13	7	9
TCTGTTTAGGCAGGGC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TACCTCAGATTGTTAC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TTAACTGTTTTGGTCC	alt_2011_fdr	16	32	33	18	10	13	30	19	24	18
GGAATTACTACCGGGT	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
ATCCGTTAATGGGACC	alt_2011_fdr	18	19	20	26	20	16	23	21	35	14
TTAAAAAGCTTCTTTA	alt_2011_fdr	22	37	29	31	33	31	27	33	35	19
ATTATTCACTCATCCC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTGTGCCATATCC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CCGTATCGGAACGTTT	alt_2011_fdr	14	9	14	5	11	4	14	11	14	7
CCTCTTGGGCGGGGCC	alt_2011_fdr	4	10	11	10	13	10	12	5	16	13
TGGTTATGGCATAGGT	alt_2011_fdr	31	31	26	26	29	19	32	34	32	17
ATTCACTGCGTGCTTT	alt_2011_fdr	59	67	71	63	75	42	71	39	80	33
GTGGGGTGTCAACTTG	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
CAAATTTGCCCTGTAT	alt_2011_fdr	160	176	195	123	147	141	182	127	195	127
TTTGATTGACCCGTCT	alt_2011_fdr	26	25	18	14	17	11	20	11	21	10
GCTCACAAGCTAAATT	alt_2011_fdr	22	19	24	10	13	8	18	7	13	14
CTTCTGCAATTATTCA	alt_2011_fdr	27	28	27	19	14	23	34	31	24	26
CGCCTGTTGGAAGCTA	alt_2011_fdr	25	25	21	28	33	12	43	17	33	12
ATCAGCGACTCCTACA	alt_2011_fdr	4	9	7	6	8	3	10	4	7	3
CGCCTTTATTAGCTCC	alt_2011_fdr	27	27	35	31	39	21	42	29	42	28
CTCTGCAGGGGCTTGC	alt_2011_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCGCCGCATTTCC	alt_2011_fdr	200	265	292	257	261	263	281	226	270	201
GGCCATGGTCACTACC	alt_2011_fdr	8	8	13	8	21	15	12	5	8	8
CTGTTAGGCTGCTTTC	alt_2011_fdr	105	112	123	103	130	92	122	103	113	86
TGTTTAAATAGTCGTT	ref_6003_new	34	53	52	32	68	49	70	39	74	42
CCTATCTAAAGAAAAA	ref_6003_new	130	212	155	124	187	132	192	103	192	112
TTCCCTATTTCTCTTA	ref_6003_new	23	44	22	47	38	32	55	29	52	30
GCCTATTATAAGCATT	ref_6003_new	58	137	73	59	111	71	136	64	122	69
GATGACACTGGACCGT	ref_6003_new	36	56	32	38	62	36	62	42	79	43
TACCTTGCTACCTACT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CTACAGCTTGTGTCGT	ref_6003_new	16	30	14	24	27	14	40	15	19	15
CTACAACCTCATCGTT	ref_6003_new	4	19	7	6	18	9	13	16	14	2
TCGTCTCTTACACTTT	ref_6003_new	13	19	13	10	24	8	16	17	18	16
GAGTCAGCACGGTTTC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
ATCTCTTGCTTTTTTT	ref_6003_new	69	84	76	61	64	66	54	42	84	42
TGGGCCAGGTATTTAC	ref_6003_new	27	28	45	22	29	20	26	20	50	24
GTCATTTTATTCCTTC	ref_6003_new	24	24	11	11	16	15	27	14	17	11
CTGTACAGCACTACTC	ref_6003_new	6	12	6	6	6	4	6	1	7	3
CATAGTAGTCCCGAGG	ref_6003_new	26	65	36	44	68	19	49	29	53	30
TAGCTCCCCCTATTCC	ref_6003_new	8	11	5	4	17	4	22	6	12	9
CATTCTAGTGCTGCTC	ref_6003_new	18	24	8	11	23	23	20	12	21	15
CGCTTATGCCTTCCTC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
ATTAAAGGATTCCGCT	ref_6003_new	2	4	5	6	3	4	7	8	4	2
ATTGGTGGTCCATCGT	ref_6003_new	42	70	42	42	50	51	78	44	56	32
TGCTCGGCGATTCCTT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TCAGATCGCATTACCA	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CTGCTCGGGGCTGGGT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GAAGGTCTTATTGTAA	ref_6003_new	2	0	1	1	1	0	2	1	1	0
TTAAGCACGTTGTAGA	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTTACAGTAGT	ref_6003_new	19	29	29	22	21	18	37	8	39	18
GTCAATCAAGGACAGC	ref_6003_new	13	29	17	21	25	13	33	16	29	25
GGGAGGAGATACTTAG	ref_6003_new	2	11	13	4	19	9	14	6	15	20
CTCCCTACATATTCAG	ref_6003_new	6	27	8	6	20	5	23	8	30	4
AGTACGGTCCCACGGC	ref_6003_new	13	32	10	16	32	18	25	11	35	13
AGATGGGTCAAGGGAC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
AGTAAGCTCATCGCAA	ref_6003_new	57	96	79	57	102	47	92	40	87	53
ACTGGGAACAAGCATT	ref_6003_new	31	36	42	36	52	39	58	36	52	28
CGTTGCTCGTGTAAGG	ref_6003_new	42	108	86	65	97	49	109	60	116	57
GGTGTTAGACTCACGG	ref_6003_new	25	26	24	10	26	19	24	19	15	20
TTACCCGGAGTCGTGA	ref_6003_new	68	129	105	63	134	56	136	66	128	77
TACAAGGGCATGGACG	ref_6003_new	148	215	209	158	252	152	235	151	212	129
CCCAAATGCATTGTGA	ref_6003_new	11	26	19	9	57	17	34	21	36	10
CTGTTTTCGTTTCGAT	ref_6003_new	6	16	4	1	9	8	18	13	14	8
TTAATCGGCGCGCCTG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TTCTCCTAGCCCCGGA	ref_6003_new	40	56	34	32	72	25	54	34	90	36
GGAATAGGGGTCTTCG	ref_6003_new	28	23	24	31	33	23	31	26	40	27
TCGGGAGATGTTTATA	ref_6003_new	1	4	4	4	6	1	1	2	6	2
TTAGTTGATAATGGTG	ref_6003_new	9	23	18	13	17	6	18	12	25	13
ATTTACTTGAGTGTCC	ref_6003_new	1	3	7	0	6	0	3	2	3	1
ATGCGGATGGGTGAAG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
ATACACCTACGGCACA	ref_6003_new	7	13	10	6	16	6	21	4	14	11
TCTCCTCACTTTAGCG	ref_6003_new	7	11	6	9	12	6	14	3	14	4
TGGTGAATGGATCTCG	ref_6003_new	52	51	42	33	42	53	59	39	52	30
CGATGACTCGTGATCA	ref_6003_new	3	1	4	3	3	3	3	4	6	2
TCCCTCAGAATCGAGT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TCGAAAAATGCGATGG	ref_6003_new	20	39	37	20	47	30	53	32	46	33
CACGTCTTCCTGACTG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GGTATCGTCAGACACG	ref_6003_new	30	21	34	25	36	30	29	37	39	24
TTTTTACCCAGTATCA	ref_6003_new	57	102	67	46	97	54	120	44	117	53
TATCCAATATCCTGAT	ref_6003_new	16	29	21	12	25	23	26	14	27	21
TCTTACTTATAGCCTC	ref_6003_new	2	14	8	17	7	5	9	7	12	11
CGTGCTTTCTCCACGA	ref_6003_new	40	70	51	40	87	48	70	44	69	19
GCAGCCACTTCATGCG	ref_6003_new	4	7	4	2	14	1	11	0	13	5
GGATTTGTTCCTGCGA	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CGTACATGATGAGGTA	ref_6003_new	0	0	0	0	0	0	0	0	0	0
AACGGTTGGGCAACCG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
ATAACAACGCCCGGAG	ref_6003_new	17	30	18	17	37	15	28	22	32	14
GACTCAAAGGATTTGT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TTTACTCTATGTAGAG	ref_6003_new	18	43	22	24	32	15	39	12	40	11
GATAGAGCCGTTATCC	ref_6003_new	31	54	32	45	59	40	76	27	80	21
CCCGATCCCTCTGGGA	ref_6003_new	43	43	39	15	39	27	57	27	54	29
TGGGGGGCCACGTTGC	ref_6003_new	51	52	48	49	67	45	78	32	65	34
GCCTGGAGAGTTAAAT	ref_6003_new	6	12	7	5	9	3	11	2	16	8
TTAATCTGATCGTTTA	ref_6003_new	44	65	38	33	61	50	64	39	60	42
TAGCCTGCACACAGAA	ref_6003_new	25	24	20	15	29	15	26	16	27	20
TCAAGAGGTAGCATTG	ref_6003_new	9	27	9	11	35	13	24	10	29	7
AGTCAGGAATTGCACA	ref_6003_new	14	24	8	6	16	14	25	10	12	6
CGATCGCGTCTCTCAA	ref_6003_new	24	33	22	20	32	11	25	20	34	24
TGGGTACTTGTGTTTA	ref_6003_new	6	3	4	1	10	3	4	5	12	4
GGGTTTGCACCTGCCA	ref_6003_new	6	17	7	7	11	7	17	9	11	6
CTGACTGCTCTCGCTC	ref_6003_new	1	5	4	3	6	3	5	1	5	1
TGAATGTTTTGTCGCT	ref_6003_new	59	104	79	84	107	70	133	83	149	50
GTTGTCCCGCTTGGCG	ref_6003_new	26	39	24	26	35	38	40	19	48	20
AATGTCGGATATGACG	ref_6003_new	43	57	68	54	68	61	71	46	60	35
AGAACTATTCTAAATC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TCATGAGAACAAGGCA	ref_6003_new	20	37	23	16	24	20	27	16	32	17
CCTTTGGTAGAACTGA	ref_6003_new	33	47	35	32	51	21	71	27	43	33
TCTGCTGGGGTCATTA	ref_6003_new	74	136	111	111	137	82	158	78	131	62
TACCAGAACGGTCACA	ref_6003_new	5	13	9	11	16	4	12	10	12	9
AACCACCAGTATGGCT	ref_6003_new	18	31	30	20	33	26	31	14	37	24
CCGTTTGCTTGTCAGC	ref_6003_new	70	120	88	60	104	52	94	56	92	71
AATGGCGTATTGGTAC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GGCCGAGAGTGTTTCG	ref_6003_new	39	47	18	30	70	20	62	17	71	16
AGTTGGCAACCTACAT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TGCTTCGGACTCACTG	ref_6003_new	10	23	10	9	12	5	17	8	22	10
CGTAGTGCAACAGCGG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TTACTCGGACGGTCGT	ref_6003_new	56	64	70	64	70	60	96	53	88	46
ACACCCGTCACAACTC	ref_6003_new	11	12	12	12	7	11	17	10	11	6
GTTGGTTTCTTGTCTA	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GACCGTGCAGTATGGG	ref_6003_new	23	40	33	25	47	22	39	29	41	18
GCTGAGTAACAGTCTG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GTACCATAGTTGCCTG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
AGGACAGGTGTGTTAT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CAAGGGTCTGTACTGT	ref_6003_new	14	20	13	8	16	10	15	12	14	6
GCGTCCCACGTGTTAT	ref_6003_new	59	74	80	59	97	56	91	50	91	47
CTGCATAGTCCGCACA	ref_6003_new	61	92	96	80	87	67	102	64	140	52
CGAGGCCTTTAAAAAC	ref_6003_new	21	37	22	26	58	20	41	29	41	22
TAGTGCGCCCTTTACT	ref_6003_new	52	51	33	38	49	40	52	26	58	43
CCACCACTCGTAGTTC	ref_6003_new	18	83	31	22	78	10	60	15	81	26
CCAGCCTTATGACAGG	ref_6003_new	25	92	30	27	82	21	76	26	100	23
GTATACCACATGACAC	ref_6003_new	2	3	6	6	9	3	9	5	5	3
TAGTTTGCGCTGCCAG	ref_6003_new	18	11	13	16	16	17	19	12	22	13
CGTCTGTAATGGCTCT	ref_6003_new	3	3	5	2	4	5	1	5	4	7
GACTGTTCGCCCAGGT	ref_6003_new	4	3	5	9	4	4	5	5	9	6
TTGGTGTTCTGGTGTT	ref_6003_new	21	42	32	21	32	19	41	18	47	16
TGGCCTCATAGCAGGG	ref_6003_new	41	91	56	40	56	38	71	51	69	32
CGCTTTTACTGCTCAG	ref_6003_new	12	13	15	14	15	9	12	12	9	5
CGAATGCTAAAGACGT	ref_6003_new	5	20	11	13	20	11	16	5	12	10
TGTTAGATTTCGCTGG	ref_6003_new	36	65	51	25	40	27	75	34	41	35
TTCGAGTGCCCTCATC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GTAGCGGCCACGTTAT	ref_6003_new	15	23	24	15	26	21	38	18	30	23
AGGTTGAATATGTTGT	ref_6003_new	2	1	0	1	4	1	5	4	7	1
GGCTCCATGGACCGGT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GTTTTCTTTTGGTTTC	ref_6003_new	15	25	17	12	18	16	17	8	26	15
TAGCCCAGGACCTTAT	ref_6003_new	26	55	32	29	54	20	43	25	49	24
TACTAGATCTGCTAGG	ref_6003_new	15	21	18	13	26	21	22	13	24	15
GTATGCCGTGACGCAG	ref_6003_new	17	15	15	10	24	11	22	5	24	14
GGGGTATGTACAGGGA	ref_6003_new	18	27	10	31	24	19	30	19	16	14
GTTCGCATCATCAGTG	ref_6003_new	21	60	48	34	42	33	45	31	48	28
CCCAATTGAATGCCGT	ref_6003_new	5	4	8	4	11	1	14	6	11	1
ACCACCAAGTGATGCT	ref_6003_new	58	125	91	68	136	75	167	76	148	66
ACCGCATATGATCCTC	ref_6003_new	14	29	21	10	27	20	30	9	25	9
GTTCTAGCAACTCATC	ref_6003_new	20	31	13	13	33	9	33	15	31	10
TAATGCACGTCAACGC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TCTGTGATACTTTCGC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CTGGCGCTGAAATGTT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TCTGCTGTCTGTTTTT	ref_6003_new	19	25	18	12	23	22	24	17	32	12
CGTGTTTTATTGACGG	ref_6003_new	21	24	19	18	40	11	20	12	20	6
GTTGTTCCAACATTAT	ref_6003_new	33	51	42	33	47	31	41	25	47	32
ACAACGTTCTCGAATT	ref_6003_new	13	8	10	5	13	7	13	9	12	7
ACCCCTCATCATTTGA	ref_6003_new	49	114	73	76	118	76	132	77	155	63
GAGTTAGGCAGCCATC	ref_6003_new	86	139	89	79	116	102	130	91	139	81
GGGTAGTCTCCATTCT	ref_6003_new	15	21	16	24	29	17	19	12	8	21
TGTCGGTATCGAACGT	ref_6003_new	1	5	4	4	1	1	4	2	7	1
GTGAGCTTTGCGGCCG	ref_6003_new	41	63	46	32	78	35	86	47	84	45
GTGTTACATTAGGTAT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GAGTATCATGATCTGA	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GACGCAGTTAAGTTAT	ref_6003_new	14	26	15	9	18	10	19	14	19	12
TTATTTATGCTTAATC	ref_6003_new	11	15	21	6	13	9	23	19	20	12
CATAAGGTGTCCCGCC	ref_6003_new	71	86	77	63	112	68	108	62	91	71
GTTAATCTAAGTTTTT	ref_6003_new	4	4	0	3	4	1	3	0	4	4
TCGGGCGGAGTCATTG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
ACTGCGTCTCACTCCG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GGGATGAATCTTTCCC	ref_6003_new	16	17	25	14	13	12	22	13	24	10
CCATTTCTAGTTTTTC	ref_6003_new	10	19	19	11	24	10	19	9	26	13
GATTGCATTCTTGGAG	ref_6003_new	22	42	35	19	48	26	37	20	34	14
GGGTTCGATTATCAAG	ref_6003_new	27	52	24	32	48	19	35	32	40	20
AGCCTCGCACGGCAAC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
GGCTTGCGTGGAGACC	ref_6003_new	22	34	33	16	29	18	40	18	32	24
GCACCTCACTAGGCGG	ref_6003_new	18	24	18	23	29	16	26	24	23	14
GTAAACGTTGTCAATG	ref_6003_new	23	35	27	21	22	12	33	16	27	13
ACTAGTACCCTCCATG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CTGGCCACGATGATAT	ref_6003_new	8	4	3	9	9	2	8	6	14	6
CATATGGGATGCCAGT	ref_6003_new	17	24	20	12	30	13	16	11	30	21
ATACGGGAGGCCTTAG	ref_6003_new	6	9	8	7	11	6	16	5	6	3
CGTAGATTATACTGGG	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CTTGGTGCTTTCCGAG	ref_6003_new	2	1	0	2	1	1	4	1	1	1
GTTTCATTGATTTACC	ref_6003_new	0	0	0	0	0	0	0	0	0	0
TACGTTCACACGTAGA	ref_6003_new	26	46	43	36	54	23	51	32	55	25
TTCGTGGGCACCACTT	ref_6003_new	0	0	0	0	0	0	0	0	0	0
CTGGATTGCCTGTTGC	ref_6003_new	2	8	4	5	9	1	9	6	0	3
TACACATTTTTTAGTT	ref_5957_new	21	11	37	39	8	20	18	24	13	26
GCGTCCGGACCTTAAC	ref_5957_new	469	213	625	465	213	458	225	442	218	476
CTTCGCCTCTAACTGT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
TTGGCGCCATGAACAG	ref_5957_new	694	228	794	676	230	603	249	615	315	534
CCCTTTTGTATTCGTC	ref_5957_new	10	18	10	19	10	18	9	29	20	5
GAGGTATCTTATACGC	ref_5957_new	181	81	197	231	74	205	84	183	66	170
TGTGTAATTAAATTAA	ref_5957_new	242	126	292	194	120	252	96	235	128	219
TCCGTGCTTGGACAGA	ref_5957_new	69	25	58	51	33	72	37	65	30	68
GGTTCTAGGCACACTT	ref_5957_new	75	33	103	59	40	79	33	77	45	75
ATTTTAGTGGGGGTAT	ref_5957_new	203	101	192	205	113	180	94	195	117	180
GGCGTGTCCCGGGGAT	ref_5957_new	92	35	94	114	36	77	49	65	42	89
GATATCATCTGTCCGC	ref_5957_new	128	40	160	95	40	104	43	97	43	98
CAGATGTTGCGCGCTG	ref_5957_new	429	168	471	464	205	377	168	432	161	431
ATGGGGGTGACTCCCA	ref_5957_new	0	0	0	0	0	0	0	0	0	0
TTTAAATTAACTAATT	ref_5957_new	27	9	24	22	8	23	16	21	9	26
TACCGTAAGATTTCGC	ref_5957_new	142	50	177	164	60	146	53	122	70	141
AGGACGGGTATGGACG	ref_5957_new	71	25	77	58	16	60	29	61	38	76
TTAAAAGTCTGCCCTT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
ATCCTGCCTTGATTCA	ref_5957_new	147	77	214	190	75	172	68	144	60	153
AGCTCTAGAACAGTTG	ref_5957_new	0	0	0	0	0	0	0	0	0	0
ACTCTCATGCTCGTTT	ref_5957_new	181	70	211	200	57	124	71	142	72	184
ACACCGTTGGCATCTC	ref_5957_new	14	1	5	8	2	5	3	13	4	8
CCGCTCATCAAAGAGT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
GACATGCTATCGGTAT	ref_5957_new	10	2	10	10	5	4	3	3	5	10
AACCATCACTTTTTCT	ref_5957_new	105	63	169	131	42	118	62	113	77	102
CCATCACTGGCGGCTA	ref_5957_new	42	14	38	32	10	28	12	25	16	25
TGTTCAGCCTGGCCTT	ref_5957_new	83	33	60	59	24	51	33	59	36	52
GTTTTTGCTTCCTAGA	ref_5957_new	278	140	340	281	104	254	122	258	128	266
ACCTTTACTTGAAAAT	ref_5957_new	627	277	753	601	316	550	288	610	307	568
GCAGGGTAGTCGGCAC	ref_5957_new	294	119	423	342	111	320	108	297	113	326
GTGCCTCTGATGGGGG	ref_5957_new	154	46	188	153	70	126	72	182	70	160
TGTAATATTAGTTGGC	ref_5957_new	379	197	492	429	186	408	176	327	205	329
AAGCTCCTTCCCTCTT	ref_5957_new	78	32	93	77	30	74	26	79	38	70
TCTTGTTTTGCGACCC	ref_5957_new	103	37	131	111	38	117	51	107	38	100
CCTGTAGCCGCATCTG	alt_5957_new	0	0	0	0	0	0	0	0	0	0
CTTCGCTTGTTGACGG	ref_5957_new	2	1	4	2	1	3	0	1	1	0
CCGATTTGGTGCGCCA	ref_5957_new	47	48	41	43	48	38	43	44	77	43
TAAACTCTTACATTTA	ref_5957_new	11	3	22	14	2	11	6	12	5	23
GGCATTGGTTCCAACG	ref_5957_new	74	33	85	93	42	77	34	107	42	73
CTTGGCCTAGGCAGGT	ref_5957_new	337	144	390	335	140	334	125	316	129	298
TTTCAAGGTTTCAAGA	ref_5957_new	94	34	99	80	29	71	41	72	40	79
GATTTTTAAAAGAGGA	ref_5957_new	129	48	144	94	50	106	58	141	50	108
TGTTATTTGGCTATGT	ref_5957_new	48	18	57	44	22	53	26	75	24	49
GTGTGCGGGCTTGGGT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
CGGGTCTGTCTTATAT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
TTCCTATATGGGGTAT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
GTATCCCCATCTTTGA	ref_5957_new	20	35	32	32	45	34	54	36	48	24
CGTGTCAGGTCCGATC	ref_5957_new	70	58	95	89	38	80	39	78	60	69
CAGCTACTCAGAAGCG	ref_5957_new	6	5	23	8	5	12	9	11	5	8
AGCTTTACCTTAACAT	ref_5957_new	11	3	17	10	17	13	5	12	1	5
TATACTTATGTCAGTC	ref_5957_new	37	28	36	36	21	29	11	29	15	28
GTATTCACGTAGCGCA	ref_5957_new	0	0	0	0	0	0	0	0	0	0
ATGTACTTTCGCTATC	ref_5957_new	82	29	84	81	29	61	43	53	28	60
TTCCCTGACTATTAAT	ref_5957_new	18	7	36	23	6	18	4	24	11	27
TAAACTTTACTTCGAA	ref_5957_new	101	45	149	113	59	103	52	108	35	88
TGCCGCGCACCGTTTG	alt_5957_new	12	6	17	15	10	12	14	12	19	12
GATTGGCGCGGTTGTG	ref_5957_new	0	0	0	0	0	0	0	0	0	0
CGTTATCACACTTTTA	ref_5957_new	157	59	261	176	60	144	66	156	64	188
CCAAGGCTTACATATA	ref_5957_new	0	0	0	0	0	0	0	0	0	0
ATTCATTTCTTGAGGT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
GCTTATCAAAGCTGTC	ref_5957_new	121	48	123	88	44	110	52	122	47	124
TCTTCTTCGCGCATGC	ref_5957_new	0	0	0	0	0	0	0	0	0	0
CCTGGTCTGGGGTTCG	ref_5957_new	0	0	0	0	0	0	0	0	0	0
GATGACCGGTCCCATA	ref_5957_new	0	0	0	0	0	0	0	0	0	0
TTCCGGCGTCTATCGA	ref_5957_new	84	42	95	89	33	64	34	97	45	77
CATGGTGTAATATATG	ref_5957_new	10	5	6	6	5	3	2	7	4	8
TATACTGCATCTGCCT	ref_5957_new	161	72	214	171	71	159	66	153	86	158
CCAGTGTATTTACAGA	ref_5957_new	319	169	368	286	168	277	200	274	193	246
GCGAAACCGTTTTGGT	ref_5957_new	5	1	8	10	3	11	4	8	3	9
AAGTCTATACTTCGGG	ref_5957_new	32	4	29	18	10	27	5	22	19	30
CTGGCAGTAGCATGGT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
ATCTACACTCCCATTG	ref_5957_new	0	0	0	0	0	0	0	0	0	0
CATTACGTATCGTCTT	ref_5957_new	0	0	0	0	0	0	0	0	0	0
GCCATACTAGGGTCGG	ref_5957_new	85	33	116	87	48	87	42	93	38	97
TACTCTTCCGGGTGAA	ref_5957_new	138	38	169	136	53	135	54	114	52	148
GGATGGCTAACGTCTC	ref_5957_new	100	37	121	121	39	97	43	118	50	113
TGGGGGCCGCGCGACA	alt_6051_new	5	7	11	10	3	8	3	3	8	5
TTTATCGTTCTTGGCT	alt_6051_new	10	13	6	2	7	2	6	7	6	7
TGATTTCGCCGTGAGG	alt_6051_new	18	20	29	33	28	20	22	16	22	23
TTTGCTGTATCCAGTT	alt_6051_new	19	9	11	14	16	11	14	9	21	10
GTTATGGCCCATCACT	alt_6051_new	12	10	5	8	12	13	10	8	12	8
GGGTGGTTCCGTACTG	alt_6051_new	11	13	19	13	6	19	6	15	9	9
TGTCGTGCTACCTTGT	alt_6051_new	32	28	49	28	36	45	38	33	22	20
CAATTGTCATCATAGA	alt_6051_new	16	16	18	23	27	14	18	10	16	9
CGTGCCCGTTTTTTCC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GTGGCTACCCGCCGGT	alt_6051_new	19	35	28	26	32	26	38	26	28	24
ACGCGCGATATGTCCG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GTCTCTCATTGGTAGT	alt_6051_new	34	35	47	48	51	31	43	44	71	41
TCACTCACTCCGCCAG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TTCTCGGTACGCTCGC	alt_6051_new	11	25	5	5	22	6	20	4	33	4
AAGTATTTTCTTCAGA	alt_6051_new	133	140	181	157	159	143	170	167	145	103
CGTGAAATTGCTTTAG	alt_6051_new	110	140	101	96	109	97	108	93	116	75
ACGACCTGCTGGGTCC	alt_6051_new	50	48	75	50	53	53	62	49	50	47
TAGTCGAGGTATACCT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CAATCCAGACCTAGTT	alt_6051_new	20	22	26	11	24	24	16	16	22	21
GGTTCTCTATGCTGCG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
ATGTTGCAATGCACGT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
AAGTATTTTCTTCAGC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TCTTGCACGAGGAGCC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CAATCTTCCTATACTC	alt_6051_new	16	14	25	18	17	15	17	27	32	15
TAGGTCTCGGATACGA	alt_6051_new	22	34	41	29	27	27	35	14	50	26
TCCGGTCTAACATTTT	alt_6051_new	0	4	5	5	6	1	4	5	8	1
TTACCAGTACCGCTGC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CAGAGGGGTTAGGATA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CTTATGAATCGATCCA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TCGCGAATCCTATGGG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GCACGACTTCCATTAG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CCGGCGTCCAACCTGT	alt_6051_new	20	24	23	23	40	17	27	20	39	20
CCAATTCTCTAGAAGT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CGCTGCCATTTTCCAA	alt_6051_new	47	72	82	55	78	47	57	58	74	52
CAGAATAATAGTCCGT	alt_6051_new	54	77	65	60	63	47	72	46	71	45
ATGAGCATGTTACACA	alt_6051_new	13	19	11	14	15	17	18	14	12	19
TCGACATTCGACAATG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GGGTCTATTGTTTACA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GCGGCCTGTCTGGTAT	alt_6051_new	36	47	54	31	54	32	43	35	40	41
CGTGGTTGCATTCCTG	alt_6051_new	38	43	32	27	32	36	39	30	48	36
GGATCTATGCAGTTTG	alt_6051_new	12	18	14	19	28	25	22	16	18	15
ACTCATGTCGAATGCA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TTTCGTGGCCCTTCTC	alt_6051_new	6	7	9	3	8	0	8	12	8	6
CCATGGGCCGAGGCTT	alt_6051_new	5	9	13	4	5	5	1	2	9	6
TATTCGTAATGAAATT	alt_6051_new	11	26	18	19	21	17	26	16	18	9
CATGCTTTTGGTCTTT	alt_6051_new	4	3	2	1	5	7	3	4	7	4
CAATGTTTAGTTTAAT	alt_6051_new	17	31	30	24	26	23	31	17	21	25
GCGCAACCCTACTGCC	alt_6051_new	11	10	3	11	10	5	6	6	10	6
CATCCCTATTACAGAG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CATATGCTGAACGATG	alt_6051_new	17	19	24	31	28	24	22	17	23	27
TTTCAGGTCAATGTTT	alt_6051_new	5	5	10	9	4	11	5	11	8	7
TACCTATCCGTCTGTC	alt_6051_new	68	78	109	63	70	62	75	65	68	63
CAAGGCCTGTGCATTA	alt_6051_new	22	16	16	14	18	18	18	20	26	15
CGTGCTCTCCGATGGA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GCCACGCGTGTGATCC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CCAGTCCACTTGTGTC	alt_6051_new	4	10	9	6	9	4	6	4	6	5
ACCGAAGATTGCCACA	alt_6051_new	11	14	19	26	20	17	17	24	22	23
GCCCTCAGTACTGTCG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
ATTATGGCCCTTCAGC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TAGGATTCTTTCCCTG	alt_6051_new	4	10	10	13	7	6	9	10	12	7
TTAAAATCGCTCGCAA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CGGCCTTGCCTCCCGT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GCCTGGTTTGGGATTC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TGGCTGGGCATCGTAT	alt_6051_new	3	3	1	0	0	1	3	3	1	1
GTGCTTTTCTCTGGTG	alt_6051_new	4	6	8	2	11	3	4	3	2	9
GTAGTCTGCTGGCCGT	alt_6051_new	72	108	91	90	84	90	83	72	100	71
GGTCATCAAATCGTTG	alt_6051_new	64	79	81	67	81	84	61	73	81	72
TACATGTGCCCACTAG	alt_6051_new	5	5	1	5	7	4	3	5	4	11
CAGACGATGTTAGGAT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TCATCGCGATTGTCAT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CGTTCGTCTCACTTAC	alt_6051_new	1	6	3	1	8	0	10	0	8	0
AGGCATACTGAGGTCC	alt_6051_new	77	59	72	54	62	51	68	55	68	52
TTAATATAGTTCGACA	alt_6051_new	36	47	39	31	39	40	51	42	35	28
CGTCCAATTTTAACTT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TCGTTTCACAGCTGCC	alt_6051_new	30	25	37	50	31	34	32	29	48	15
CCACTGTTGCGAAGTA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GAGACTCTATGATTTT	alt_6051_new	18	11	20	8	15	8	15	8	12	7
AATACATATCCGTCTT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TGATCCTTTTGGAATC	alt_6051_new	5	7	5	8	2	4	2	2	2	3
GCTGACATTGGTCGTT	alt_6051_new	198	178	234	186	195	178	202	157	193	175
ACATGTATAGTTTTCT	alt_6051_new	35	41	45	43	54	36	43	36	30	24
GGATGAACTTGCTTCA	alt_6051_new	27	24	31	15	17	28	24	22	19	13
TGAGTGCTCAACCGCT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CCACCCCTAGACCTCC	alt_6051_new	9	20	11	9	13	16	20	16	25	13
TGTCTAGTTTGACGGA	alt_6051_new	56	54	61	65	52	60	65	51	72	38
GTTATTCTTTCGCATG	alt_6051_new	26	19	23	18	28	20	20	5	18	15
CGGCTCTTCCCAGTAA	alt_6051_new	8	4	7	12	9	8	7	10	13	9
ATTCATCCTCATTAGT	alt_6051_new	1	11	6	7	3	3	3	6	5	4
CTCAGGAATATTCATT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CATGTTTAGATTAGTG	alt_6051_new	4	2	3	5	9	5	3	6	12	2
TACCTCAGGCTTCGCG	alt_6051_new	6	15	17	9	9	8	9	7	6	6
CAATCTTTCGGCCTGG	alt_6051_new	34	34	31	22	23	19	33	23	25	34
GTCTCCCGTGGGCACT	alt_6051_new	55	74	62	59	96	60	79	31	86	53
TGTGTTATCCTGCTTG	alt_6051_new	0	0	0	0	0	0	0	0	0	0
CGAAAGGATTTTGAAC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
AACAGTTGGGTAACCA	alt_6051_new	68	77	80	79	69	55	69	79	58	65
TAAGGGCTACGTTTGA	alt_6051_new	32	13	24	24	13	24	24	18	27	26
TTTGATTTGTATCACT	alt_6051_new	7	4	8	7	6	6	2	3	5	5
ATGCTGGCAATGCCCT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GAACCCCTATGGGTGC	alt_6051_new	2	3	3	2	0	3	2	0	1	0
CGACAGTGGTTATGGT	alt_6051_new	1	1	1	2	0	1	0	1	1	0
TATTAGTTAGGTACAA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
GAGAAATCTGCGGAGA	alt_6051_new	21	30	38	28	29	25	25	29	24	28
ACAAACGTCTCCACAG	alt_6051_new	55	66	75	65	65	46	61	53	59	55
GTATCTTAAACTGCAC	alt_6051_new	49	42	49	60	25	49	25	56	31	40
TATTAGCAGTCAGTAT	alt_6051_new	7	8	9	2	9	3	6	6	4	3
GGGCATAAACAGCTGC	alt_6051_new	20	12	22	19	13	15	11	16	28	14
TCATAGAACTTTGAAT	alt_6051_new	4	6	4	1	1	1	0	4	4	0
GGTTTACTTCCTTCAG	alt_6051_new	48	26	63	52	39	30	34	46	48	27
CTGCCATTTCACAGGC	alt_6051_new	0	0	0	0	0	0	0	0	0	0
ATGACCCTCACACATT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
AGTGTTCTAATACCCT	alt_6051_new	10	12	11	7	16	18	5	12	14	12
TTTACCTACCGCATTA	alt_6051_new	48	123	60	73	143	57	113	51	146	53
TAGAAGACACAGAGCT	alt_6051_new	10	16	9	16	17	14	14	17	9	13
TCCGGCAGGTTCTTAT	alt_6051_new	0	0	0	0	0	0	0	0	0	0
TAGCTTGATACCTTCG	alt_6051_new	60	92	84	75	84	73	98	81	84	63
ATCTCTACCCTGTATA	alt_6051_new	0	0	0	0	0	0	0	0	0	0
AGACCTCCAGGTGACT	alt_6051_new	29	20	40	32	25	25	34	24	41	30
CTGTTGGAAACACCTT	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
TGGATAGAGGTAGGGT	ref_2031_fdr	55	58	65	56	50	47	50	53	59	37
TGTCCTGAGGTTTCCT	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
CATCCGTGAGAGATTC	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
ACCATTTCATAGTAAG	ref_2031_fdr	55	36	45	31	32	29	35	26	32	31
GTAACTTGTCGTCCGG	ref_2031_fdr	4	5	4	0	0	4	2	1	2	3
TAGTCTGGTGCAATAC	ref_2031_fdr	40	48	54	40	39	34	66	29	30	44
CCCGGTGTGTATCCGT	ref_2031_fdr	6	6	4	3	5	1	5	5	9	6
TGTGTCGGTCCTACCT	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
CAATCTGCCTCATGTG	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
TTAAACCTCAGCATAT	ref_2031_fdr	22	18	34	18	22	19	11	20	20	17
CTCCTGATCGGGTACG	ref_2031_fdr	25	26	37	25	29	25	30	33	35	26
TTATGGAACTGTTTTG	ref_2031_fdr	47	47	59	22	38	48	61	35	47	40
TTCTGAGCAATGTACC	ref_2031_fdr	65	50	97	84	58	72	78	85	87	67
AATAAATTTGGAATTG	ref_2031_fdr	272	264	326	293	292	284	264	278	313	247
GAAAGCGATAGACGGA	ref_2031_fdr	41	39	56	40	37	46	35	37	50	35
TGTTGACCAAGCTCGG	ref_2031_fdr	115	87	122	105	95	97	112	88	90	106
CCTTTAGGGACCCATC	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCACGGTATGTCT	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
ACCAAGCTCGATGCTT	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGCAATAATTCGG	ref_2031_fdr	7	7	8	6	7	11	3	6	5	3
CAAGCATCAGACCAAC	ref_2031_fdr	27	28	39	28	27	20	36	17	18	26
GCTTCATTATTATGTC	ref_2031_fdr	12	12	16	15	13	12	15	14	23	12
CTTCCGTGAGAGATTC	ref_2031_fdr	68	52	67	61	62	55	46	65	63	68
AGCTCACTTGTCGACT	ref_2031_fdr	14	22	13	18	20	9	37	19	25	11
GCCCTTGGTAATTGTC	ref_2031_fdr	32	30	56	37	37	34	52	34	66	31
CTCGCATTTTTTTATC	ref_2031_fdr	15	23	9	13	9	12	18	10	9	16
GGCAAGCTAGCGCTAC	ref_2031_fdr	34	44	45	28	47	31	39	34	36	32
CCTTTAACGTCCACTT	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCTTGCCCTCGAC	ref_2031_fdr	0	1	2	0	0	1	0	3	0	3
TCACGTACTCACGTCA	ref_2031_fdr	0	0	0	0	0	1	0	1	3	0
CAGTTTGCTTTGAACA	ref_2031_fdr	120	133	153	94	134	99	149	127	160	95
CGCCTTGCGATCCTAT	ref_2031_fdr	163	139	214	185	169	191	138	166	146	171
AATTCGACCATTAGGG	ref_2031_fdr	51	48	74	63	31	41	29	51	54	51
GAGTTTCTCCTAGTGC	ref_2031_fdr	14	8	11	13	7	15	9	14	18	15
CTTGGTTTGACATGTA	ref_2031_fdr	35	39	38	55	52	39	49	50	35	33
ACTGAGCGTTGAACCC	ref_2031_fdr	4	8	4	8	12	7	8	10	9	18
TAGTATGATTCCATTA	ref_2031_fdr	37	37	48	34	27	40	47	22	31	31
AGCCAGGACATATGCT	ref_2031_fdr	19	22	35	21	31	24	27	12	29	21
CCGAGTCAAATTTATC	ref_2031_fdr	258	253	264	229	217	246	280	213	280	200
ATTAGGCGCTCCCGCC	ref_2031_fdr	361	321	384	264	338	290	337	260	416	282
TCCTAGGCCTTGTGCT	ref_2031_fdr	21	22	32	16	21	18	26	18	31	20
GCTCTCAGCTGCTCCG	ref_2031_fdr	192	181	229	191	183	177	213	177	205	141
GCTTAATTTCCGGTGA	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCGTTGGGTGCAG	ref_2031_fdr	172	129	198	165	127	176	136	140	173	153
TCTTTAGGCAGCCATC	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTAGTTGTCAAAG	ref_2031_fdr	0	0	0	0	0	0	0	0	0	0
GTGCGCCATATTCGAT	ref_2031_fdr	81	37	102	96	54	75	68	78	78	84
TGTGCTTGGGGTCCGC	ref_2031_fdr	149	164	214	191	151	167	157	150	155	141
GTGCTTGCCGACCGTG	ref_2031_fdr	18	24	38	35	34	37	37	26	34	21
ATCTGGATTTCTCTCA	ref_2031_fdr	106	80	133	78	85	112	83	101	103	79
TACCTGCTGGCTGTAT	ref_2031_fdr	0	0	0	1	0	2	1	0	1	4
TTTCGATACCAAGCCC	ref_2031_fdr	4	6	6	5	6	6	3	5	1	4
AGGCTGTTATTTAGCG	ref_2031_fdr	36	27	35	32	25	25	32	33	33	28
TCTATCATTTCCGGCT	ref_2031_fdr	40	21	38	15	17	27	18	34	24	26
CTTCCCATGGAAAGTC	ref_6012_new	49	36	44	55	51	47	34	40	44	28
TCAGCATGAGGAATGC	ref_6012_new	20	31	31	17	22	22	21	15	44	11
GCGGTACCCTAGTGTC	ref_6012_new	0	0	0	0	0	0	0	0	0	0
ATCTGGATCGAACAGT	ref_6012_new	27	36	18	17	31	20	34	27	29	22
TCAGGGCTATTAATAG	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CCCTTGTTTCCTGGTT	ref_6012_new	9	21	10	11	17	5	23	9	19	13
ACCAATTAGTCCAGAG	ref_6012_new	6	7	4	1	1	7	4	7	4	3
CGAGTAGCCCGCCCGT	ref_6012_new	5	6	10	19	14	12	15	18	15	12
GATGTTGGGTAGACCG	ref_6012_new	224	289	300	232	285	222	296	263	281	225
ACGTCCAGTCAGCACC	ref_6012_new	10	5	4	9	6	8	17	10	6	4
CTCCTTTAGACGTTAC	ref_6012_new	4	5	2	2	1	4	2	2	2	3
GGGCACGCTTACAAGG	ref_6012_new	8	8	15	9	15	15	12	10	16	14
ATCATTGTGTCTCGTT	ref_6012_new	92	108	108	100	88	119	82	89	85	95
ACTCATCCAAGATCGT	ref_6012_new	18	6	8	20	19	17	10	9	12	7
ACTCATCAAAGATCGT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
GTCCGTTCGAGAGATT	ref_6012_new	16	14	15	20	13	26	18	19	20	12
ACCGGCTATCTCCGAA	ref_6012_new	15	25	24	14	38	12	41	23	41	16
CTTGTGGTTAGAGGTC	alt_6012_new	10	17	31	16	29	13	31	10	21	17
CTCGTGTTTGGCACAA	ref_6012_new	110	148	121	102	128	96	150	103	155	73
ATCGCGTTGCTAATTA	ref_6012_new	47	50	53	59	52	51	43	35	63	32
TTAACGTTCTTCTAGG	ref_6012_new	0	0	0	0	0	0	0	0	0	0
GTTGTGACCACTTCGC	ref_6012_new	12	10	13	14	7	18	11	10	16	10
TGTACCCTTGTTCCCA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CAGGCAGTAATATGAC	ref_6012_new	7	11	10	13	10	18	7	9	11	5
GATTTTTTTCGGCCTA	ref_6012_new	4	6	5	5	7	7	5	1	8	4
GCAAGGCTAAGTCTCG	ref_6012_new	38	42	62	33	57	32	48	40	51	41
TACTGTACTATCTGCG	ref_6012_new	0	0	0	0	0	0	0	0	0	0
GTAGAAAGCAAAATGC	ref_6012_new	33	34	46	39	22	32	34	30	47	29
AGAGATTTTCATCTAA	ref_6012_new	20	26	33	22	15	18	25	20	23	18
CTTACTCTCCGTTGCT	ref_6012_new	9	16	11	14	21	11	17	10	13	10
CAGATTGCCGTATCCG	ref_6012_new	0	0	0	0	0	0	0	0	0	0
TCTCCCGCATCACGCC	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CTTGCGACAGGGCTCT	ref_6012_new	64	63	87	77	90	52	83	84	72	68
AGTCTATGGACTCACG	ref_6012_new	21	16	13	13	8	15	13	11	12	15
CGGATGGACGACTCGT	ref_6012_new	6	14	12	15	11	13	23	13	18	9
AGGCTATGTGTTTTAA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CAGTAGCGTCGGAGTA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CGAACCTTTCCGCACG	ref_6012_new	0	0	0	0	0	0	0	0	0	0
AGCCACAACAAGGGGA	ref_6012_new	22	34	38	38	41	28	45	19	41	30
CATCGCTTGTACTCGT	ref_6012_new	24	28	39	23	34	35	30	24	37	13
GATATTCGCAGCGGGT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CTAATTTCGAGTAATA	ref_6012_new	53	40	49	44	50	44	52	47	43	42
CTTCTCGGGCGCAGCT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CCGTCCTAGACACAAC	ref_6012_new	3	6	2	1	4	2	11	3	12	2
TGTTTTATTCTCAGCT	ref_6012_new	37	41	35	30	33	54	34	35	38	34
AAATACATCGAGGCAT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CTCGCCGCTGACCGGT	ref_6012_new	6	16	20	12	4	8	14	7	10	8
TCTTTAAGCAATTTTG	ref_6012_new	20	21	30	19	41	31	44	34	28	19
CCGGATTCACTCAGTA	alt_6012_new	6	18	15	15	12	14	11	11	14	19
TAATTTTTGACGATAG	ref_6012_new	0	2	0	0	0	0	2	0	0	0
TTATTAATTTCTTTTC	ref_6012_new	5	5	4	6	3	1	7	4	2	1
ATGCTCATCATGGTGA	ref_6012_new	3	11	15	9	4	15	5	7	8	8
TGTTCATAATTATTCT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
ATATAAGTGGCGTCGA	ref_6012_new	53	69	74	49	38	59	47	48	48	40
ACCCTTTTTTGTCCGG	ref_6012_new	18	18	19	20	19	18	19	13	24	13
TCTAGGGATCTGGACC	ref_6012_new	1	8	9	8	5	5	6	9	11	9
GTTTGTCTATGGCTCA	ref_6012_new	56	76	77	66	60	56	84	58	78	76
AGTTCTACTTGGCATG	ref_6012_new	0	0	0	0	0	0	0	0	0	0
AAGTCTTTGGAATTTG	ref_6012_new	33	36	35	36	33	42	29	33	32	30
ACTGTTTGTTTTTCCG	ref_6012_new	113	83	111	104	100	100	124	112	94	75
TGAATGCATCGTTTGT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
ATTGAGTCTAGTGACG	ref_6012_new	7	9	8	2	10	3	8	3	8	6
CTTCTGGTACGAATAT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
TCCCCTACCCTCAGAG	ref_6012_new	24	22	41	30	27	24	27	26	44	22
ACCGTAAAATACACTC	ref_6012_new	38	46	34	27	40	26	40	27	50	29
CTTGGAGTAGTCTACT	ref_6012_new	33	44	32	42	36	38	43	31	44	34
AAATGCTGTCTTGACT	ref_6012_new	36	40	43	38	34	25	41	49	46	29
GCGGATCTCACTTTTA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CCAGCGGCAGAAGCCA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
TTTGTTTACATGCCAC	ref_6012_new	21	15	18	16	28	10	21	31	21	15
AACGGTGTGCTGCGTT	ref_6012_new	8	8	13	9	1	3	6	5	1	2
ACCTCTTAAAGTTCTT	ref_6012_new	12	17	18	17	20	10	16	19	14	10
CTTAGTCAGCTACTCC	ref_6012_new	7	17	15	11	16	15	21	9	20	18
AAAGGTCGCTAGTGGG	ref_6012_new	0	0	0	0	0	0	0	0	0	0
ATAGTTTTCATGTATA	ref_6012_new	75	60	66	78	65	49	60	50	62	60
TTGGCTTTTCTCGTAG	ref_6012_new	122	158	136	138	153	150	163	113	156	120
TTTTATTCTTGCTTAT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CCTGTGATAAACCCGC	ref_6012_new	25	32	26	33	27	14	26	15	31	19
AAGTGGGAGATCTCTG	ref_6012_new	154	158	188	140	121	186	153	167	138	159
TAGGAGAGTTCTAAGA	ref_6012_new	40	61	83	56	51	44	70	66	54	59
GGCCTGGGTCATCAAA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CCCGAGGTGCTCAATT	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CTAATCTTTAGCCTAC	ref_6012_new	76	104	71	83	90	57	100	81	80	63
CTGCTCGCGTGGATCG	ref_6012_new	71	66	60	57	52	57	49	61	66	54
GTGTTTTAAGGTTTGC	ref_6012_new	13	29	26	24	19	21	25	24	18	16
GTTCTCTATATGGTGA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
TTTGATCATTCATTGT	ref_6012_new	104	112	140	113	102	114	112	114	136	97
CATCTTGGACATAATT	ref_6012_new	3	6	13	5	11	2	18	8	9	10
TTAATATGATACCTCA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
CGACAAATTTCTGTGA	ref_6012_new	0	0	0	0	0	0	0	0	0	0
TTTTCGTATCTTCGCC	ref_6012_new	10	8	5	6	2	8	4	9	6	7
ATCTGTGACCGGAGAG	ref_829_fdr	35	69	50	49	77	44	76	41	79	38
ACTCGGACAAGCGATA	ref_829_fdr	71	74	81	50	61	55	104	54	64	62
GCTCGTTTTTGCTGGT	ref_829_fdr	55	81	85	51	76	56	93	62	61	63
TGCCCTGGATCCCCCG	ref_829_fdr	34	39	53	37	56	29	29	29	59	49
GTACTTGGTAGACAGC	ref_829_fdr	2	6	3	2	3	5	6	3	7	4
ATATTGTACCGTTAAT	ref_829_fdr	25	39	32	34	27	21	26	36	36	23
TGTTTATTCGTCTGAC	ref_829_fdr	20	10	5	5	16	13	14	10	16	10
CTCTTACCGGATTCAC	ref_829_fdr	5	2	4	5	7	3	3	3	2	4
ACTATGGATTCACATA	ref_829_fdr	42	42	78	64	45	57	58	43	64	45
TCAGATTTGTGACTGA	ref_829_fdr	51	70	56	37	49	34	53	35	48	42
CTGACATAGCTCTTCT	ref_829_fdr	57	62	96	87	64	60	64	49	73	59
CAGGTTTTTGAGATCA	ref_829_fdr	41	91	79	63	103	61	104	69	91	70
AGCGGACCAATAGGAA	ref_829_fdr	23	34	33	32	48	29	32	39	28	27
CAGCCCTAGGAGGTAT	ref_829_fdr	26	47	19	35	48	20	52	17	58	9
CCTGGGCACCGGGATC	ref_829_fdr	10	9	5	4	11	6	14	6	13	10
CCGGAGACTATACACT	ref_829_fdr	4	16	11	10	7	2	15	15	14	5
TTCAATACCTTACAGC	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGTGCATGGGAA	ref_829_fdr	3	3	4	3	7	3	6	4	3	2
CGAATTTATGCTCATC	ref_829_fdr	2	1	2	0	1	1	0	3	0	1
ACCCCTTGAACTTCTC	ref_829_fdr	3	6	2	5	7	2	12	2	9	3
AGAGGATATGTCGAGG	ref_829_fdr	42	53	53	44	45	49	52	33	48	33
GCTGCAGAATTGGCAT	ref_829_fdr	57	64	62	66	58	55	59	51	59	54
GCCCCCTAGCCAATTC	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
TATATTAGTCCTGAGG	ref_829_fdr	7	12	18	3	4	7	19	6	18	13
CTCTCAGGTGGCGTTC	ref_829_fdr	17	33	37	23	44	19	53	26	46	17
ACGTAGCTACCTATGC	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGGGAACAATAAG	ref_829_fdr	22	23	23	24	21	14	36	19	36	15
TTCATTGTTTCAAATT	ref_829_fdr	31	44	45	49	35	43	52	38	47	36
TTCTAGCTATTTAAGG	ref_829_fdr	65	91	94	76	83	65	92	74	105	69
ACCCTCCTGGCCAAGC	ref_829_fdr	38	64	34	38	48	29	42	25	65	25
TGCCAGAACACGGGTT	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGTTCGCAGTATA	ref_829_fdr	24	31	35	25	25	38	23	26	29	20
TTTGTGGCATTGTATA	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGTTTCTCTCGTA	ref_829_fdr	5	5	3	1	9	3	3	1	3	3
GGCTCGGAGTATACTG	ref_829_fdr	12	15	24	22	22	16	18	23	26	11
TATTTTAATTTGTTGG	ref_829_fdr	11	5	16	11	10	11	15	6	8	8
TCGTTTGGTACTGCCG	ref_829_fdr	5	5	11	7	9	7	11	3	6	6
TTGTTTCTATTGACCG	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
CTAACGCGATCAGGCC	ref_829_fdr	6	13	21	10	11	10	8	5	6	7
CAGGTGCTGTACCCCA	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCCTTAACGTATT	ref_829_fdr	26	29	42	21	38	30	42	31	37	26
TCGATCTTGGCAGGTA	ref_829_fdr	102	119	134	105	90	109	134	98	109	99
ATTTACACAGAATCAG	ref_829_fdr	26	42	53	47	57	36	40	45	61	42
ATCGCCCGGTTTGAGT	ref_829_fdr	47	43	33	26	47	32	59	44	49	33
TGGGGTTTCCCTTCTG	ref_829_fdr	29	30	41	39	39	28	44	25	45	17
GTCATGATTGATTTCC	ref_829_fdr	4	5	11	12	16	7	11	13	8	8
AATAGTGTAGTTTATT	ref_829_fdr	43	56	60	41	49	46	72	33	59	34
GTCTACTGACCCAAAC	ref_829_fdr	38	26	35	36	50	30	34	28	41	34
TCCACTCGTAATTTGT	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
CGGTGGTATCCTACAT	ref_829_fdr	106	100	104	73	88	78	101	83	98	58
GGAGCACATCGTATAG	ref_829_fdr	4	4	5	5	7	7	7	2	1	0
CCATTTGCACATGCTG	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
TGTAAGCCTAATTTTC	ref_829_fdr	38	50	53	44	43	62	67	34	61	41
TCGATCTTTTACTGAA	ref_829_fdr	66	75	59	61	63	55	83	52	61	61
GATGTTTGTTATAACC	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAGGGTATGTCTT	ref_829_fdr	69	77	62	74	66	60	92	67	82	54
ACAGGTGTCAGGTGCT	ref_829_fdr	9	15	7	6	8	9	9	7	16	4
CTTCTTAGGGTCATGG	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
CCGCCGGACACTCCCC	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGATGCAGTCGAA	ref_829_fdr	40	40	54	34	62	40	44	36	47	36
AATTATCGTACTTTTT	ref_829_fdr	192	237	295	201	250	194	252	207	272	174
TAATTCCTGGAGGGAT	ref_829_fdr	51	50	47	57	52	50	68	42	66	40
TGGTTCTTAGCTATCC	ref_829_fdr	0	0	1	0	0	0	0	1	0	0
ATTGAAGGCTTCGTCT	ref_829_fdr	41	51	58	21	52	41	42	38	31	35
GGCACTTGGAGCGTTT	ref_829_fdr	140	152	158	135	158	133	187	122	185	110
CTCGTCAGATCAGGTC	ref_829_fdr	49	34	50	31	30	34	48	30	43	38
GAATAAGGTAGTCCTA	ref_829_fdr	1	1	0	3	4	2	4	0	5	1
TTCGTTAAAATTACTT	ref_829_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCAGGGTATAATA	ref_829_fdr	17	25	15	19	30	16	27	18	32	19
TTCCTTTAGGCGTAAA	ref_829_fdr	76	67	85	66	68	67	75	60	85	66
GTGTCTCATTCCGTGG	ref_829_fdr	8	21	18	15	27	13	28	13	22	19
AATCTCTGGAACAGGG	alt_2632_reverse	19	12	14	17	11	8	11	9	12	13
GGGTATCCTCATGCAC	alt_2632_reverse	68	48	79	68	53	63	66	57	58	51
AGATCGAAGCCCTTCT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGTGTATCTGACC	alt_2632_reverse	122	98	140	101	103	101	93	120	87	104
AACTTCAAATCTGCGC	alt_2632_reverse	44	44	64	51	45	40	38	57	37	34
GGTGTATGTATCTCGA	alt_2632_reverse	43	45	65	61	72	67	61	58	63	51
GCTTCACCGCTTATTA	alt_2632_reverse	7	20	30	13	30	13	35	19	31	13
GCAGTACTCGGTCCAT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GCTAATGGCGGCACGC	alt_2632_reverse	92	51	116	84	41	76	58	81	49	65
TAAGTATTTAGGGGCC	alt_2632_reverse	13	15	17	21	14	17	20	16	14	10
CGTTATGCGTTTAGTG	alt_2632_reverse	5	5	5	1	2	3	6	5	7	7
TAGCTCTCGGATGATA	alt_2632_reverse	5	3	4	3	6	2	0	4	3	4
TAACGGCATTCCTTCG	alt_2632_reverse	143	111	158	132	143	128	111	140	114	138
CTTTACGATATCCCCG	alt_2632_reverse	22	29	34	30	36	27	31	22	28	18
CCCCGCACGGGGATAC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTTCCTGATCCGC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TAAATTCGTGGATAAA	alt_2632_reverse	81	55	79	81	49	71	46	82	53	62
TGTAGTCTTTCGTCAT	alt_2632_reverse	43	27	63	23	36	35	43	38	41	37
AACCTGCGGCGCATTG	alt_2632_reverse	5	2	3	1	5	5	2	1	5	1
GACCGTTGGTCTGTCG	alt_2632_reverse	37	35	47	39	36	33	27	27	25	26
TGTAATGGCACCGTGA	alt_2632_reverse	46	26	73	49	40	44	51	47	43	62
CATGTGTAGATATGCA	alt_2632_reverse	5	3	2	5	0	1	4	1	2	0
AAGCGGCCAAAATCGT	alt_2632_reverse	10	7	15	5	5	7	8	5	10	6
GTTTACATGCACAGTA	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TGTGAAAGGTATCCTG	alt_2632_reverse	16	15	32	25	15	10	19	20	13	32
TCAGACCCGCCTCGGG	ref_2632_reverse	275	199	307	308	223	251	211	228	192	234
GATCCTGTCTATTCTA	alt_2632_reverse	19	17	16	16	12	27	13	15	13	21
CGACACCTCCGTGAGG	alt_2632_reverse	7	0	1	2	2	2	4	3	3	3
TACGGCCAAGGAAACT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCTCATCCGCGACACG	ref_2632_reverse	366	333	485	422	321	318	320	385	326	310
ATTGCCCACCCCGTTG	alt_2632_reverse	79	62	85	79	65	69	67	54	82	62
TCCACACCCGGCATTA	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGGTCAATGTTTC	alt_2632_reverse	7	21	4	4	17	10	22	9	17	4
CTTAAGCTGAGCCCTT	alt_2632_reverse	30	27	36	26	26	32	22	32	34	26
TCATGTCTGTAGGGAA	alt_2632_reverse	10	17	16	17	10	9	14	13	12	9
TTGCTAGCCTAATTTT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TATTTCAAGATTCTCT	alt_2632_reverse	28	16	19	18	15	17	17	13	18	13
TATCCACCTCTAAAAC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCATGCAACTCTT	alt_2632_reverse	57	54	54	53	54	57	71	47	72	43
TCGTGGATGGATATCG	alt_2632_reverse	3	1	5	5	2	4	1	4	5	0
GCTGTTTTCTGGGAGT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTCGGTCTGTTCG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TACTTCTAAGGGGTAG	alt_2632_reverse	60	41	64	57	48	45	40	40	53	35
GTGGCCAGTTAATGCC	alt_2632_reverse	109	91	101	104	93	100	92	95	105	72
TGTATAGTGTTCGCCT	alt_2632_reverse	42	42	57	49	49	48	55	39	50	33
TGTCTGTCTAGAACAG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CTCACCGTGAGGATGG	alt_2632_reverse	33	21	27	36	25	21	26	18	14	19
CATGGTGGAAGATACG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CATGTCCAGGTGGCGA	alt_2632_reverse	51	51	75	69	56	62	72	63	46	51
ACTCATTTGTTTCGCC	alt_2632_reverse	6	3	9	5	2	6	8	11	6	5
TCTACATCTTCTGTCC	alt_2632_reverse	303	262	349	295	243	263	236	276	278	250
CTCACTAGCGATCATA	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGGTACACTGCTC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGATCTTATACCC	alt_2632_reverse	22	15	29	29	23	23	18	30	30	21
TCGGCACAAGCAAATG	alt_2632_reverse	42	29	56	58	49	43	46	65	48	35
GCGCGGGACCTTTCCG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTTACCGAGTTTA	alt_2632_reverse	39	24	56	35	32	54	39	44	31	38
CTCCGCTTTAAAACGT	alt_2632_reverse	38	47	72	57	38	54	44	55	70	45
ACCTCAAAGCGAGATG	alt_2632_reverse	34	28	28	32	20	30	28	26	30	36
TTATGTCACCATCGAT	alt_2632_reverse	84	93	127	89	80	98	75	83	89	85
TTTTGCATTCTTAACC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGTTGGTGATCTT	alt_2632_reverse	56	50	72	55	36	46	45	55	52	44
TATATGAGCGATACAG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTTCTAGAACAGT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GAATCTCCGTATTTTT	alt_2632_reverse	8	3	7	4	6	4	3	6	1	6
AATCTTTTCTTTTGTA	alt_2632_reverse	11	5	5	4	4	10	6	4	9	12
CATATTGCAGTTTCGT	alt_2632_reverse	235	169	288	281	175	240	169	234	193	235
CTATGTAGGCTGCGTC	alt_2632_reverse	18	10	29	9	12	12	13	14	17	15
AGTCTGTACATTGCGT	alt_2632_reverse	113	120	170	133	154	125	143	114	132	115
GTGATTTATAGCATTG	alt_2632_reverse	22	26	21	19	12	24	30	20	12	18
AGAAATTCAAACGTCT	alt_2632_reverse	12	19	15	7	9	8	19	7	21	11
ATCATCCCGTTTCCCT	alt_2632_reverse	14	6	13	9	3	7	11	8	5	2
TTCCTGATAATGCGCG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGATTGGCCTTTT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GCGTAGATTTACGTGC	alt_2632_reverse	10	6	8	6	3	8	19	5	11	6
GAAGTTTACTCGATAT	alt_2632_reverse	5	11	13	11	9	8	20	13	12	12
GTCAATGAAGTTGCTA	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTCCCACCCCGCC	alt_2632_reverse	14	4	10	7	12	7	8	7	11	12
CACGTCTCCGCGTACG	alt_2632_reverse	3	2	1	5	1	4	2	6	5	4
GTCTTACCCTGGTTCC	alt_2632_reverse	42	48	79	58	51	50	61	54	75	49
ACGGAGTTTTCACCAG	alt_2632_reverse	29	31	40	32	21	37	38	30	42	25
TTCTCGTATCCTGATG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCTATCGCACTCT	alt_2632_reverse	39	42	41	42	46	30	44	39	38	28
AGTTCCCTCTTTGCAG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTGCGGGAACAGG	alt_2632_reverse	11	6	7	3	2	2	2	9	5	6
TTTTGCGTTGACAGTC	alt_2632_reverse	63	50	52	62	62	50	50	42	42	44
TGGATGTCAGTCAACT	alt_2632_reverse	28	32	40	50	42	48	39	34	61	32
ACGCTTAACTTTACTA	alt_2632_reverse	19	16	19	21	29	10	15	25	25	14
CCGTGTGCATTCCCCA	alt_2632_reverse	13	11	16	13	14	14	15	12	13	10
CCCTTATATCTAACGA	alt_2632_reverse	37	41	46	33	43	28	35	56	32	20
TGGCCGCCTCACGGCC	ref_2632_reverse	311	217	306	271	191	267	177	238	218	271
ATGGGTACGGTTTTCA	alt_2632_reverse	130	107	129	133	116	119	126	122	111	105
GGTAAGTTAGATTGAG	alt_2632_reverse	44	36	42	45	50	47	45	24	47	34
CCCGGCATGAGTGCGC	alt_2632_reverse	30	19	28	19	26	45	24	32	31	27
GTCGTAACAGCCATGC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
ACATGTCACCTCAATG	alt_2632_reverse	61	54	69	52	77	61	56	44	54	54
CAAACCTGCCCCCTGG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCCATAGTGTCCTCTC	alt_2632_reverse	61	100	90	71	110	75	105	71	102	59
TTCGGTCATTGGCACG	ref_2632_reverse	108	188	130	144	162	118	160	117	190	127
GACTGGCGTTATGCAT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCCACTCCAGAGC	alt_2632_reverse	21	27	16	16	21	23	21	19	21	10
CCTTACCCGAGGGGAG	alt_2632_reverse	73	94	82	84	89	52	118	71	91	62
GGGGAGTTATATGTGG	alt_2632_reverse	35	20	46	48	40	25	35	35	25	33
AGTTCCGTTAAAGGGG	alt_2632_reverse	42	38	52	41	27	36	33	57	36	36
TGCATCGTATCTGGTT	alt_2632_reverse	17	11	21	13	8	16	11	20	16	17
GCTATCCTTCTATATC	alt_2632_reverse	14	21	25	16	13	20	16	9	31	21
TGACAGCTGGTTTAGG	alt_2632_reverse	1	0	0	0	3	0	4	0	0	0
TTTTTTGAGGCTGATG	ref_2632_reverse	97	81	91	101	74	104	86	91	88	84
AGGTACTGCGTGGTCT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCATCGGTATATAAGT	alt_2632_reverse	25	15	22	21	16	14	15	17	15	21
CTTTCCCCAACAATGT	alt_2632_reverse	60	36	73	48	52	40	35	44	49	43
GTGTTCCGGTTGCTCT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTGCCGGTTGCGG	ref_2632_reverse	17	24	32	29	20	28	27	24	25	19
GCGATATTCTCTACAC	alt_2632_reverse	51	41	39	42	34	32	36	53	37	29
GTTCATGCTCATTAGT	alt_2632_reverse	26	28	27	37	28	27	21	34	24	28
TTCTAGTCTCACTAGC	alt_2632_reverse	8	6	5	8	6	5	8	7	7	3
GCGATTATCACTTTTG	alt_2632_reverse	9	3	9	11	8	10	11	10	8	8
CTAGGTTCGTTTTTGC	alt_2632_reverse	96	100	98	77	99	70	110	68	103	64
ATGGTTCTTCGCATTC	alt_2632_reverse	16	20	28	20	20	21	24	28	18	15
CTCCTTATGCGTATCG	alt_2632_reverse	108	132	158	102	124	131	148	128	151	124
GCACCCATTAGAAAGG	alt_2632_reverse	49	48	50	33	44	28	56	45	37	38
TGAGGCCTGCACGACT	alt_2632_reverse	26	19	27	25	17	14	29	27	25	22
AATTACTCTTAATTGG	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCTCTGTTATTTT	alt_2632_reverse	42	42	63	48	56	52	42	49	63	47
CCAGGAGATTAATTGC	alt_2632_reverse	13	72	13	10	73	8	65	12	84	4
ATTCTCTCAGGGCAAT	alt_2632_reverse	31	32	28	32	19	35	18	31	23	21
AAGATCTTATACATGA	alt_2632_reverse	41	15	40	51	27	27	27	49	37	39
TCGTGCTCTGTCTTCT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGTGCTACCGGCC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CCACCTAGGCAATGTA	alt_2632_reverse	4	4	5	3	5	10	5	5	5	8
ACCAACATCGTTTACA	alt_2632_reverse	12	13	10	4	11	12	9	10	8	4
GAGACCGTTAGGGTCC	alt_2632_reverse	9	9	18	13	17	8	7	4	11	11
ACACTTATGAAACCCA	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCAACTTTCCAAT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTTTAGCGTTTCG	alt_2632_reverse	7	6	11	11	9	5	7	4	5	3
TAACGATCGGTATAAT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTGTTCGTTGATA	alt_2632_reverse	32	30	39	39	25	26	34	32	38	31
GTATAGATGCGTGCCA	alt_2632_reverse	18	18	30	10	12	18	14	21	25	17
CCTTTCTTATTGATAT	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TACAACCATGCTACGA	alt_2632_reverse	86	88	86	89	89	69	88	78	79	67
CAGGACACGACCCCTA	alt_2632_reverse	74	65	82	63	61	72	72	77	57	54
GTAATCTTGGTATCTA	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCATTCCTGCTAGTTA	alt_2632_reverse	16	8	8	6	13	5	6	10	8	14
TTGTCCTAGATGCCCC	alt_2632_reverse	13	61	13	14	54	5	59	19	52	9
TTATTCCATCCTTGAC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
AGCGACCGCTTAAACC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATATTACTTAAC	alt_2632_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTCGGTGCTTGTC	ref_2632_reverse	40	48	62	68	50	51	62	65	70	41
AATTACGGTCCGTATA	alt_2632_reverse	55	32	76	60	35	63	62	59	57	48
GTTTGGTCGTGTGTAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CCGTATTGCAGTCCTG	alt_4450_missing	1	6	2	1	1	3	7	0	2	1
CGGGGTTCGGTTAGCC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ACGGACTCGTAGGTTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TACTTCCACTCTTACC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TACAGTTTTTCGAGTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGAGACATTGATATTA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TTGTTAATTATTTCGT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCTCTTTAATTGGGTA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AAAATAGTCAATATGT	alt_4450_missing	7	11	9	9	8	4	6	3	7	8
CCAAGGTGATCTCTGA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATACGTATTTTAGAAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCTCCGAACATTCTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTGCTACTATATGAAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTTTACTGAGTTTGGA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TGTGCTCGTTGCTTAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TCGACGGGCGCACCAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GGTCATTGTCTTTGAT	alt_4450_missing	14	20	12	8	19	13	28	16	12	18
CAATCCGTTGATTACT	alt_4450_missing	2	7	9	9	4	6	11	5	9	5
CCTGCGCTGCCTGTTT	alt_4450_missing	1	2	1	0	3	0	6	1	6	0
CTGTAGGACCCTCGAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ACTTAATTCTGGTTTC	alt_4450_missing	6	7	9	5	4	9	5	3	7	4
CTAAAGGTGACAATAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CATCCTGTATTTTACC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATATGCCAGCTGACTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCCATGATTGCTTTGA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GACTCGTCTATTCTGA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AATGATCAGCGCTGCG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTAGGGGTGTTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CACACCTCGTTTGCTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CAGTGCTGTCACAATT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TCATCCGTCTGACGCT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCTAACTCATTGGCT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GATGGTTGACGACTAT	alt_4450_missing	6	12	14	9	14	15	13	5	10	10
TTCCCAATTTATTGTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TATGACCACTTATGTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ACCTGTACGTTTCTCC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TGGTAAATGGAGAGTC	alt_4450_missing	12	16	7	13	9	17	25	8	20	7
TTCTTGTCGCAGAGCC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ACTGCCCCCATTCTTA	alt_4450_missing	7	4	4	5	4	4	13	3	5	2
AGTTGTACAGCGTTGA	alt_4450_missing	1	1	1	0	1	1	0	0	0	0
CTGTTGTGGCCATTTC	alt_4450_missing	14	8	12	9	11	5	26	14	6	5
CCAGGGTACTGGCCTA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TCTCTGTCATAGAGTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TGGACGGCTTCAAGGG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AGATCAGAAACAATCT	alt_4450_missing	10	25	17	11	17	11	17	8	31	11
AACACCGCGGAGGACG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TGCATCTGTTGGTATG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATGTTTTGCTAACTTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AGGTAGCTCTTAGTTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATGTTACTCCTGTGCG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CCATTGGGGAGTTCGC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GACCTCGTTCGTACCG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AATTTCCAATGTTCAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AAGTACCGCTAACAAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATTCTAAGTCCTTCTT	alt_4450_missing	7	10	9	13	12	6	16	3	11	7
CGATACGTCAGTATAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATTCTCGAATATGCTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TATTCGCGAACCTCTC	alt_4450_missing	3	17	7	7	12	11	14	12	18	8
ACGTGCAAACTGCTAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TCGGACCGATTTTATA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TGCGAGTCTGATCGCT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATTGGCATGTTGGTAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CTATCTCAGACTTAAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGCCCTCACACCTCAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ACATATTCCGTTCAAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGTCGTGTATGCATTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTGTCCTAATTCGGGT	alt_4450_missing	1	5	5	3	6	4	2	3	4	2
ACGATTCAGTTGTTAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CCTGCCACTCTCGCCC	alt_4450_missing	5	25	7	7	14	7	28	4	26	2
CTATATCCTCGTGTAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TACTAGCTTTTCAAAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CACTCCTAGCTCGCTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCTAACTCATTGGTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CTAAGGAATAGTTCCT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AGACCTTGGCATCTCT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TTTACTAGCGGTTCCG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GGTCCGCTTTTTACTA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TTCAGCTTATGCACAA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CTAGTTTCGTGGTTAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTAATCTTAGATGCTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GGTTGCTCGTGCCCTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTAACTTCCACT	alt_4450_missing	10	18	15	20	32	9	30	9	18	11
CGAACTTTCATTTTTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GGATATTCTGTTGGGA	alt_4450_missing	17	20	12	13	13	8	12	13	17	8
AGCAAGCCTTCCTCTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGAAAGATTCAATTAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CCGAGACTGGCACGAA	alt_4450_missing	9	18	10	9	7	13	19	12	13	5
TACGATGTTATCTTCG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATGAACATACAGGTTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGGATTACGAATGGGG	alt_4450_missing	25	20	36	25	37	29	27	28	36	13
GGAGCAAGGCCTTTCC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGTCCTAATATCCCCA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TACCGTAGGTTTGATC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CCGTTACGTCTTTTGC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCTGCTTGCCTGGAA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCGTCTAAATCGTTAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TTAACTTATCCTTGCA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCGTTATGATCGTGG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCCGGATTTAAGCCAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GAAAATGTAATCCGGG	alt_4450_missing	14	16	20	19	30	17	35	14	25	21
AATGGTAGGCTCTTGG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCATTAAATTGCCTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TAAAGAATGGTAATTA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGAGACTTTATAATAG	alt_4450_missing	8	5	6	1	2	5	8	5	8	3
GACGTACAAGCAATTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGAGCTGCGCACCTTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGACTGCCGATGATGT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TGTGAGAGGATAGAAA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CTGGGATCTCGTACCT	alt_4450_missing	0	4	4	3	7	4	7	3	5	4
CCAGTCACAAACCCGT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCAATCAATAAAAGAG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTTTACCGACTTATTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TAAATCGGCGCCAGAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CAGAGCTCTGATCTCT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGGTATAGAAGCTTAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CCACTGCCTCGCCCTA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GGTTCTTTTGTCGGGT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
AAAGAAGCACGTTATC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCTTATCCACTCAGG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CGATTGCGGGAACAAG	alt_4450_missing	1	5	4	3	3	2	9	2	4	2
TCTCGTTCTTGCCTTT	alt_4450_missing	18	20	21	19	27	13	21	13	22	12
ACAATAGATCAGTGTA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TGGTTCTGAGCGCCGT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GTGTATCGGCTGCAAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TACGTAGTTTACAGTT	alt_4450_missing	3	6	7	5	3	11	15	3	1	6
TGCCATCATTATGTCA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCAAGGGCTTCACAGA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GAAGGCCCGTGCCCTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCTCGTGTAGCCGATT	alt_4450_missing	1	0	3	1	5	0	6	5	2	2
GGTCGTACCGTGCGCG	alt_4450_missing	12	37	26	14	29	9	21	7	27	7
GATGTCATAATCTGTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ACTTCAATCGCGTAGC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GCTAAATCCGATTGTC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CAGGAACTGCCTTCAC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TAACTATTCCTAGTTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CCCGCTTGTACGGCTG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CAGCCTGCGCCTTAGG	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CTGTGACCACCCTATA	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
ATTATCTTTGTGCCGC	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GGCCTCGCAAGGTAAT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
GGACTGTTGCGGTCTT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
CACTACCGATCAGTTA	alt_4450_missing	24	20	29	18	39	16	34	20	39	8
AATACTTCGGCAATCT	alt_4450_missing	0	0	0	0	0	0	0	0	0	0
TTCATTGACACATTCT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCCGGTTTTACAC	alt_3359_reverse	7	5	10	5	3	4	8	4	6	7
ACTTCCATTCTTAGTT	alt_3359_reverse	6	15	9	8	11	8	8	9	7	9
TCGCCACTAGGGCTGC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTTCCCCTGCTCT	alt_3359_reverse	10	11	9	17	23	14	20	11	17	10
GGAGCGAACAAACTGT	alt_3359_reverse	37	46	52	45	52	47	57	40	46	39
GTCAAATGTTGGTGTT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GGCGCCTAGACAAGAC	alt_3359_reverse	14	13	14	24	19	22	25	13	14	10
TTACCGCTTTTGGATT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TCATGGGAGGTGCCGG	alt_3359_reverse	27	27	32	25	29	36	29	25	22	19
TGATCCTCATTCAGTA	alt_3359_reverse	47	39	51	47	36	45	57	25	54	41
ATGCATATTGCCATCC	alt_3359_reverse	45	49	44	44	53	42	51	37	44	38
AGGCTCTGTGAATCCG	alt_3359_reverse	15	15	25	15	18	12	16	10	17	13
GGGCATGTGGAGGTTG	alt_3359_reverse	19	35	44	20	22	27	35	19	23	24
TAAACGCCCTTTGCTC	ref_3359_reverse	12	8	13	16	8	14	7	4	8	11
GTCGTGCCCCGTCCCG	alt_3359_reverse	9	5	9	7	4	5	9	15	10	6
GTGCTACACGGACACG	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCTGTCATTGCAA	alt_3359_reverse	37	31	33	45	50	37	43	42	47	43
GAATCCCTCACTAATC	alt_3359_reverse	4	5	11	5	5	8	8	7	6	7
GTGATCCTGTGAGCTT	alt_3359_reverse	26	25	14	13	22	14	28	10	29	20
CTAGCCTCCTGTGTTG	alt_3359_reverse	45	51	58	51	48	44	51	33	59	35
GTGGGACGTATTTCCC	alt_3359_reverse	24	16	24	17	22	15	15	17	25	24
ACTGTATTAATATGTC	alt_3359_reverse	58	63	67	53	59	44	45	60	51	59
CCCAAGCACTGATGTT	alt_3359_reverse	34	32	41	26	31	29	38	33	32	28
AGTCGATCCTCAGTGG	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
CATCACTGCCGAGCCA	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
CGATTTTACTGGCCCT	alt_3359_reverse	74	69	104	62	74	75	101	80	69	73
AATTGAAATGATCTAT	alt_3359_reverse	27	30	26	30	35	41	22	22	34	25
ACGGTAGCTCTGGAGC	alt_3359_reverse	14	5	6	8	5	8	5	3	4	5
GGCAAGTCGTAGAGTA	alt_3359_reverse	127	156	157	115	137	123	142	130	143	119
ACTTCTTCGACCCTCT	alt_3359_reverse	13	5	14	13	6	5	10	11	9	8
TTAATCTAGTTCTCGA	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGCTCAGTTTTTT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGTTTTCCTCAGT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGACTTGCTTTCC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TTAATCAACACAGACT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GAACCGATGTTAAGTA	alt_3359_reverse	76	56	87	74	78	53	87	57	73	60
GTCATGTACATCCGAT	alt_3359_reverse	14	25	26	22	24	19	13	18	25	13
GCTGTCCACGCGCCTG	alt_3359_reverse	87	97	116	114	113	115	106	96	103	84
TCCCTGCCTACTTGTG	alt_3359_reverse	40	61	49	32	65	26	55	32	50	35
GAGCCGCGGAGTCGGA	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTAGACTAAGTCA	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCGAACTCGGGAT	alt_3359_reverse	67	66	86	77	72	95	74	61	93	54
CACTATGGGATCGGAG	alt_3359_reverse	31	20	40	41	26	21	29	25	30	30
CATGATTTTATTTTTT	alt_3359_reverse	28	22	48	30	37	15	32	25	28	28
CAGGACCATCTATTCA	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTAATGGCGCTAA	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GATTCTACTAGCCTCT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAGAAAGGCATTC	alt_3359_reverse	41	25	27	26	30	32	38	26	45	40
TATGCTTGGAAGGCTA	alt_3359_reverse	9	14	17	9	11	11	15	14	18	10
GGTAACTGTTAGCTAA	alt_3359_reverse	27	40	38	37	40	28	34	36	38	19
AAGCAGGTGTGCCGGA	alt_3359_reverse	107	87	109	111	100	78	105	102	107	83
ATTTCTCGCCACATAG	alt_3359_reverse	45	48	61	30	46	38	30	30	43	37
CACTTATGTTAGTCTA	alt_3359_reverse	10	11	5	5	18	12	15	17	10	9
GCGGTAGTTCATATTC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
CCACGACCGTATACGC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCTGCGAAGAGCC	alt_3359_reverse	23	29	45	26	33	33	44	20	40	28
GAGGGTGATATTATCT	alt_3359_reverse	24	26	33	23	19	26	37	30	29	25
AGTTATAAGTCCACTA	alt_3359_reverse	20	14	21	10	22	9	19	12	11	7
CCATAGGCGCATTTCC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
AGCACACAAATGGTCC	alt_3359_reverse	29	25	32	33	31	30	27	28	40	28
ATTACACATTCTAGAT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TCAATTTTTGTTCGGG	alt_3359_reverse	21	23	38	28	31	31	31	24	36	28
TCACACACATTCGTCG	alt_3359_reverse	14	8	11	3	13	5	12	8	4	3
ATCAGCCATGATTGCC	alt_3359_reverse	172	202	207	165	225	143	189	157	196	127
AGCGTTAAATCCTGAT	alt_3359_reverse	21	17	15	17	12	15	21	20	30	22
TTTTGTTCGGTTGTCT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
ATACGTTCGCAGTTCG	alt_3359_reverse	8	7	22	11	8	4	11	7	10	9
GCTTCAATAATAATTC	alt_3359_reverse	15	28	25	21	33	22	21	26	28	23
GCTCAAATTAGTCAAC	alt_3359_reverse	9	17	12	21	19	14	17	14	15	12
TCCTGGTAGATTTCGC	alt_3359_reverse	3	4	1	5	4	2	3	2	8	2
TTCGGTTTATACAGCA	alt_3359_reverse	79	70	105	80	95	72	82	72	92	72
CGTGCTCTGTATCAGG	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
CACGGGATCGATCACT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTCGCAGCCCCCG	alt_3359_reverse	18	27	28	14	19	14	25	21	24	15
CTAATTATAATGCCTT	alt_3359_reverse	17	9	14	17	13	12	5	9	10	11
TTCTGTCTTCTCTGAC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TCGGACTAACTACCAG	alt_3359_reverse	11	8	12	10	16	13	11	11	16	6
TGGTGGTTGCTGAGCC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCTAGCTATTCCG	alt_3359_reverse	7	11	9	16	11	9	21	17	9	11
TACCGTACTGGTGATT	alt_3359_reverse	13	19	13	18	25	10	15	12	14	16
GTCGTGCATTGCTCTC	alt_3359_reverse	36	33	47	46	43	30	40	43	35	33
CGGTAAGGGTCGAGTT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCCGCGACCCATT	alt_3359_reverse	91	81	94	70	89	67	78	74	74	75
GAGTTTCCAAGTGCAG	alt_3359_reverse	11	14	4	17	11	5	17	15	15	9
TCGCTGTTCACGGCGG	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
AATCAACACCCTCTCA	alt_3359_reverse	23	24	47	42	25	28	26	32	23	26
AGGAAATCACGCACGC	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GTCTACACTGCACGAA	alt_3359_reverse	35	30	30	43	30	22	45	30	42	26
TGAATCTTTAAGCGCA	alt_3359_reverse	24	21	25	33	23	21	23	18	28	20
TGCCATTGAGCTCGTC	alt_3359_reverse	105	79	115	107	76	85	78	94	93	71
ATCCCGTACGAGTCCG	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
CTATTAGTGAGTACAC	alt_3359_reverse	70	69	70	64	67	53	80	58	65	51
CACGTCCTGTGTAAAT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
CATTAGGGTAATTATT	alt_3359_reverse	63	61	88	69	47	64	43	53	58	64
ACAAATTTATAAAACA	alt_3359_reverse	93	114	107	133	124	108	121	110	102	121
GTGTCAGCGTCACATA	alt_3359_reverse	50	31	53	47	51	51	41	57	30	40
CTCCTATCCTCTATGA	alt_3359_reverse	19	14	16	22	19	14	18	18	13	11
CATCAACTTTTTATTT	alt_3359_reverse	0	0	0	0	0	0	0	0	0	0
GTCGATACTTAGGGAG	ref_1224_negative	15	28	21	16	19	18	34	12	31	7
GTGTCAGTTCTTGGTG	ref_1224_negative	10	17	10	11	20	8	18	8	17	8
CGATACTACCCTACCC	ref_1224_negative	7	2	2	4	7	5	12	3	16	6
GTCCCCAGGCATTTAC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CGGGCCCGCCTTGACG	ref_1224_negative	11	11	18	15	24	11	18	6	15	10
CAGTGCTTTTTGATAA	ref_1224_negative	17	43	18	20	38	19	33	14	36	15
TCGTTGTTAGCTCGTG	ref_1224_negative	19	28	17	19	27	17	36	8	34	11
TAATTCTTTGTAGGTG	ref_1224_negative	24	31	28	19	33	16	41	16	51	21
AATAACTGAGGGCGAA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TATTAGAAGGGTCATG	ref_1224_negative	31	72	47	40	64	39	61	35	64	55
TTCAAACGTGTAAATG	ref_1224_negative	82	111	76	72	102	70	98	76	126	48
TCTGCCTCATCTAGGT	ref_1224_negative	44	50	50	31	64	38	55	36	59	32
TTGGAAAGGGTCATAT	ref_1224_negative	13	34	19	12	24	10	20	16	27	21
GTTATTCCACGATGTA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TTAATGGTTGTGTAAT	ref_1224_negative	8	17	11	7	17	6	11	8	12	5
ATTTTGCCTTTCCGTT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TGTTTAGATCCCAGGC	ref_1224_negative	42	64	53	42	51	47	67	34	75	38
GATGGCCCATAAATTA	ref_1224_negative	25	50	42	47	58	25	44	18	36	26
TAACACACTTTCATGC	ref_1224_negative	11	9	11	4	12	6	18	13	20	8
TATCGGCCAGGGTGCG	ref_1224_negative	18	16	22	13	23	15	24	10	26	9
AAATTCCTTGTCGTGA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
ATCCCCACCGACATGT	ref_1224_negative	38	87	57	45	86	33	87	37	87	43
TATTAGCACAAACTAT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CTGTGCGCAACTTCCT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CGCGCGGCGGCTCTGG	ref_1224_negative	23	21	14	25	22	13	21	22	31	9
GCTACCTTAAAGAGAT	ref_1224_negative	10	21	14	5	25	9	12	10	17	9
TCGGGCATTTCTGCCT	ref_1224_negative	3	11	2	2	10	0	12	3	11	4
CAGATCGCTTCTCACA	ref_1224_negative	0	0	0	0	1	0	0	0	1	0
CAGGACCATCGTCTAC	ref_1224_negative	22	33	20	14	48	19	38	20	40	25
ATGCTCTCAGTCTCGT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TGAGCGTTGTCTGATC	ref_1224_negative	0	1	0	0	0	0	0	1	1	1
CATCATTCAATTACTA	ref_1224_negative	13	21	23	10	18	11	19	14	23	7
GGTTGCTAAGTGATAG	ref_1224_negative	61	92	66	70	88	54	97	44	130	41
TTATTTCAAAACCTCA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CATGCACGCCCGCGAC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TAGGTGTACTTCACCC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
AGCGACTAGCAAACCA	ref_1224_negative	23	28	16	29	29	22	51	17	23	29
CCCCGGCTCGCTCCAA	ref_1224_negative	10	9	8	10	14	2	5	1	15	3
TGACAGTGTATTGGAT	ref_1224_negative	31	39	31	25	58	30	51	16	66	22
CTACCTTGTACTACGC	ref_1224_negative	2	8	2	3	6	2	4	1	2	2
TGGTAGACTAATTCAA	ref_1224_negative	34	36	51	23	51	33	37	31	43	38
CGCTTGGTAGCAACTA	ref_1224_negative	29	50	49	29	54	27	39	24	65	26
CGTTTACCATGAGAAC	ref_1224_negative	10	14	9	7	17	11	27	9	20	12
CGCGGGGAGGCGATTG	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CAAATAAACTCTATCC	ref_1224_negative	79	98	82	74	104	76	101	77	106	52
GCACTTGGGAATTGAC	ref_1224_negative	62	72	61	57	90	57	68	64	82	49
GAATTCTCCCGGCGTC	ref_1224_negative	8	18	10	15	26	18	19	11	23	12
GTCACGCCCGGAGTGA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GGTCTAGTGTACGCGA	ref_1224_negative	18	24	14	7	15	18	19	7	16	7
AATAGACCCCTCGGGG	ref_1224_negative	29	36	39	39	39	28	36	28	41	20
TTCTGTCCTGTATAAC	ref_1224_negative	0	2	2	3	3	1	3	2	4	4
CCGACTATAGCCCTTG	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GACTTGGATGTCAATC	ref_1224_negative	10	30	27	18	29	16	18	13	28	16
CGCTCACCCCTACAGT	ref_1224_negative	4	7	6	4	13	5	13	4	5	2
GTGGTTGTGTTGTGTA	ref_1224_negative	14	25	14	17	24	12	24	8	31	16
AAGCCGCCATTAGGCG	ref_1224_negative	11	15	14	10	13	8	6	4	10	17
CCCGTCTCTTTTTCTC	ref_1224_negative	5	12	13	4	15	7	11	5	5	5
TAAGGTGCTCAGGGTT	ref_1224_negative	43	78	41	49	71	40	67	48	89	48
CTAGGGCGCTCTCGGT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GGATGCAGGTAATGCC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CAATTTCCTGTTTATA	ref_1224_negative	48	35	30	45	53	27	46	39	47	30
TTCAGTGCAGGGCATA	alt_1224_negative	27	56	37	33	40	23	59	40	48	28
CTGAGGCCCGGCCCGG	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TTACGGTCTGCCGCAC	ref_1224_negative	53	98	64	62	92	52	110	52	61	41
ACTTCGGCTAATTCTT	ref_1224_negative	15	31	36	23	38	25	18	18	27	16
TATCAGCATTTTCGCA	ref_1224_negative	36	32	44	36	44	21	39	27	35	36
CTATACGAAATAGTTC	ref_1224_negative	28	36	35	32	38	19	43	34	32	25
CATTAAGGTCACTTAT	ref_1224_negative	17	25	36	14	24	19	43	24	40	17
TGTAACGTTATTCAAT	ref_1224_negative	57	84	66	52	76	53	104	45	102	41
CTTGGTTTGCTAACTT	ref_1224_negative	10	14	16	12	28	11	24	7	27	9
GTGCAACCTTCCTGGC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TTCGCACGGCTTGCTT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CAGGATAGATTTTTTC	ref_1224_negative	59	77	66	44	62	43	54	52	56	47
CGGTATCGATCGCATC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GTCCTGGGGCCTCGTG	ref_1224_negative	1	7	3	2	3	4	2	4	5	1
CGCGATAACTCCCGTT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TAGGCTACCCTTGGCT	ref_1224_negative	52	140	73	89	175	68	147	70	135	54
CACTTGAGTAACCCCC	ref_1224_negative	14	10	13	13	7	9	12	21	16	8
GAGGCGGGTGTATGAT	ref_1224_negative	67	79	85	75	89	53	111	62	86	55
CTTCTTGCATCTGACT	ref_1224_negative	35	58	46	43	61	55	66	36	62	29
GTTCGTCTTCGGGTAG	ref_1224_negative	2	13	5	6	5	4	7	2	6	4
TGGATAGCCGTCAGTA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
ATAGACCTTTTTGGGC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GGCGTGCTGCGGCTTG	ref_1224_negative	11	25	18	17	23	15	23	11	19	12
CGTGTGGATTCTTATT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GTTGTTAACGTGTTTT	ref_1224_negative	79	128	104	77	151	88	154	92	132	92
GGTTTAAATCGTTCTG	ref_1224_negative	5	7	1	5	10	1	7	6	5	1
ATACCATGATAAATTC	ref_1224_negative	35	41	32	26	44	35	42	22	46	17
TATAAGTGCTCACATT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TCAGCCGTCGCGGACG	ref_1224_negative	19	32	22	15	33	24	47	17	34	16
CTGAGCCTATTCGCAT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GTTAGCTCGCCATTTT	ref_1224_negative	36	58	42	44	57	47	59	41	64	37
CGAGCTCTGCCATATT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TGAAGCACTCACCGAT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CTAACTCTACTCTTAA	ref_1224_negative	27	44	44	31	55	35	56	31	75	23
GTGGCTTGATTGTATC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CATAGCGGATGACGTT	ref_1224_negative	14	21	13	19	19	23	28	18	25	10
TCAGCTATGAGTCTCC	ref_1224_negative	21	22	18	25	31	14	32	16	31	10
CTCGTGTATCAGAGAG	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
ATCACGGTCATAATCG	ref_1224_negative	25	13	25	10	21	19	25	20	25	12
TATATTTCTCTTGTAT	ref_1224_negative	13	9	12	10	14	6	15	9	13	11
GAAGATGTTGTGTTCA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
ATAATCATCGATAGTG	ref_1224_negative	21	33	33	16	18	22	36	19	24	14
GTTGGTTCCGCCTGGA	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TGAATCCAGATTCATA	ref_1224_negative	25	41	44	30	36	24	40	22	54	22
CCGGTGGTTACGACAC	ref_1224_negative	39	40	44	37	40	21	48	28	42	31
AATACCAGGATGACTT	ref_1224_negative	20	20	19	13	17	12	23	8	19	17
GCATTATCGCCTACAG	ref_1224_negative	3	1	5	1	8	0	4	2	0	5
AGGGTGCTTTAGTCCC	ref_1224_negative	2	4	2	6	10	2	11	6	6	5
GTTCTGGATTAACTGC	ref_1224_negative	6	15	9	8	12	7	13	8	12	5
ATATATATTCCTTGGA	ref_1224_negative	3	12	12	8	13	7	18	12	14	5
CGAGTAAGTCGGGTTT	ref_1224_negative	12	22	10	11	17	9	20	10	9	9
TATTCACCAGTAGCCT	ref_1224_negative	7	9	14	7	16	16	14	3	10	8
GTTAGGATGTAAGGTC	ref_1224_negative	25	58	32	26	46	33	46	29	51	26
TAAACCGAGTAGGGTT	ref_1224_negative	16	22	17	13	23	12	19	6	21	14
GGGTGACGTCATTGGA	ref_1224_negative	6	12	2	6	4	6	6	3	7	10
TTATGGGAGTGTGATG	ref_1224_negative	1	9	7	8	12	3	5	1	15	2
TCGAAGGATATTCAGC	ref_1224_negative	3	8	3	9	9	1	12	8	9	10
TCACTGGTTCGATTGC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CATGCGTTACGGCAAA	ref_1224_negative	18	25	26	28	33	12	26	11	26	14
GGAAGATAACGCATTA	ref_1224_negative	41	62	63	53	61	44	53	36	84	43
AAAGTGCGAGGCAAGT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TAAATACCTTGAAATT	ref_1224_negative	25	47	30	31	33	19	65	22	55	24
CCAGGCACAGATCCTT	ref_1224_negative	21	58	35	27	54	24	69	22	75	23
CTATATGTCATCGCAA	ref_1224_negative	17	30	27	15	37	15	28	31	30	16
AAACGTGTGGTTCCCT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
CGCTACTCGTCATACC	ref_1224_negative	31	63	39	51	79	36	78	37	76	37
AGGACTAAAGCTGATT	ref_1224_negative	107	160	153	121	192	136	174	119	171	98
CCCGAATATGCGTAAA	ref_1224_negative	59	181	93	84	181	70	173	72	196	61
GCCTTGGTCAATCCCT	ref_1224_negative	5	2	6	4	12	2	9	5	6	5
GACTTGGATGTCAATA	ref_1224_negative	6	8	5	2	8	3	13	6	14	2
ACGCTTGTGTACCGAG	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
GCGTTCTGGCCGCCTT	ref_1224_negative	12	32	25	19	28	11	29	11	24	15
GTTTGCTACTGTAATC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
AGTCTATTTCCCGTTC	ref_1224_negative	24	45	32	44	36	18	43	36	45	22
TATTCTACAAAGACCG	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
AATGCTTACGCGTTTG	ref_1224_negative	58	113	103	68	133	101	126	89	115	75
GGTGGTTGCGGTTGAT	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
TCTTGCAGGCTTTATC	ref_1224_negative	15	22	27	20	31	12	21	19	25	15
CATTCAGGTATCACTA	ref_1224_negative	22	41	23	21	44	22	32	28	29	22
TGTTTCTTATCCGTAC	ref_1224_negative	67	106	116	71	121	85	106	68	126	72
CCGCGATCGTGCAAAC	ref_1224_negative	0	0	0	0	0	0	0	0	0	0
ATCTTTCCATCTTTTG	ref_1224_negative	55	59	53	43	53	46	57	37	53	42
CCAGTTTGTACATACG	ref_1224_negative	5	7	4	4	3	7	1	0	7	2
TGCACGGGGTTGAGAA	alt_1224_negative	34	52	35	28	41	31	65	28	61	33
CGAATTCTAGGCCGAA	ref_1224_negative	1	0	1	4	0	2	0	0	1	1
TTTATAATTCGATAGC	ref_1224_negative	4	5	4	5	7	4	5	3	6	1
GGGCATGTAGTCCAAT	ref_1224_negative	53	41	47	27	57	24	43	43	62	27
ATGTCTTATGGTCAGC	ref_1787_RC	41	31	55	56	28	42	31	51	29	26
TCTTACTACGGTACAC	ref_1786_RC	18	19	28	22	18	8	26	25	18	18
TCCCACGAATCCATAG	ref_1786_RC	1	5	1	2	3	3	4	5	2	1
CGACTCCATCCCCCAA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
ACCCTCCATCCTCACT	ref_1786_RC	4	3	4	1	4	2	4	3	7	5
CCGCGCTCAAATGCGC	ref_1786_RC	6	2	12	12	3	7	4	1	4	1
AGTCCGAAAGGCGCTT	ref_1786_RC	13	7	6	9	2	7	3	13	5	8
CACGCTGCTGGCTGTT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GTTCCTACCTTCTGGT	ref_1786_RC	60	46	79	70	47	59	58	75	67	41
ATACTCTCCTCGCATC	ref_1786_RC	26	54	23	26	46	22	30	16	45	19
TCATCATCTAAATTCA	ref_1786_RC	39	29	50	53	42	33	35	41	44	42
TACTACTGTTAATGTA	ref_1786_RC	94	105	136	119	77	119	122	111	99	111
TTGAAAATTGTCCAGT	ref_1786_RC	116	69	121	97	53	108	66	80	72	81
AGGGCTCGTATGTTGA	ref_1786_RC	8	4	10	19	8	12	11	15	12	10
GATGCATGGTTTTCGG	ref_1786_RC	40	23	32	45	28	54	21	45	29	55
CGCCTAAATCTAGGAG	ref_1787_RC	49	30	66	64	41	66	42	46	41	54
TATCTTGATCTCCGTA	ref_1786_RC	100	66	129	117	79	77	59	112	68	88
TCAGTAGCAGTAGTGT	ref_1786_RC	20	25	30	34	13	28	23	22	28	25
CATCTGCTGTACAATT	ref_1786_RC	18	24	33	28	16	14	32	24	25	30
TGCTTATATCTGCCGA	ref_1786_RC	28	9	33	17	6	17	19	9	22	17
ACCCAGTACAAAGCGG	ref_1786_RC	20	17	37	33	22	21	17	41	25	26
TAAGTTTAACACGCAT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GGTGTCACGCGTAGAT	ref_1786_RC	20	9	27	29	13	27	24	28	16	33
TTCGAACCAAAACGCG	ref_1786_RC	99	62	117	125	69	114	57	106	51	87
TGGAAAATCTTATAGA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGGGAGAGCGAT	ref_1786_RC	15	11	13	16	12	12	4	10	20	13
CGCGATTTGTTATCCA	ref_1786_RC	37	12	35	36	14	29	10	33	20	18
CGGTATATATGTATAT	ref_1786_RC	34	18	36	40	24	22	19	39	23	34
TCTCTCTGTGCAGTGG	ref_1786_RC	41	23	29	36	10	32	18	32	20	16
GGCAGCCCGTCATGCC	ref_1786_RC	10	15	16	10	20	9	13	12	11	8
CATTTGTAGGTAATCA	alt_1786_RC	73	64	117	70	72	80	54	73	89	77
TTCGGTGTAATACAAG	ref_1786_RC	38	40	38	54	31	32	34	32	38	22
GGCATTTGAGCAACCT	ref_1786_RC	81	54	96	94	59	80	60	90	66	77
GGCACATTGTACCGGC	ref_1786_RC	99	63	127	106	60	101	63	103	77	91
CGAGCGCCGCGACATG	ref_1786_RC	5	4	17	3	10	7	3	6	4	7
TTCGTTTCCCGAGGGT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CGCTGATAGGTGGAAT	alt_1786_RC	25	44	41	27	54	28	45	30	40	20
CTGGACTACCCGAACT	ref_1786_RC	255	157	330	258	161	235	170	238	186	248
GGGGATACCTGGCTAT	ref_1786_RC	30	19	28	25	16	22	14	16	17	27
GTTCGGGTCCTTTAGG	ref_1786_RC	14	8	13	14	7	6	12	9	4	9
TTTACGGGGTATGGTT	ref_1786_RC	156	91	216	159	91	140	100	168	109	102
TTTTCGCAAGGGTGCT	ref_1786_RC	3	2	9	8	5	2	0	2	5	5
CGGTCCCTCGGCTCGC	ref_1786_RC	7	5	11	12	8	11	12	7	6	9
GTTCCGTCCCATGGCA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TTTCTACTTTATCTCC	ref_1786_RC	21	10	24	36	18	20	12	26	25	22
TTGTGGGGCAAAACGT	ref_1786_RC	54	34	69	52	46	47	40	51	42	48
ATCCGACGTATCTCTG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CAAATTAAGCGGGCAC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TCTCCTAGACTCGCCG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TTCTCAATTTAGTGCG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GGAAGGATGCCGCTCG	ref_1786_RC	10	7	17	16	6	15	7	29	11	14
TGATAACGGTAGTGGA	ref_1786_RC	28	20	21	23	7	25	18	19	20	30
CTTGAAAGGTGACTAC	ref_1786_RC	3	2	2	3	2	3	0	1	0	8
TTATGGGACGCAGGCA	ref_1786_RC	29	27	36	44	20	29	21	31	26	27
TCTCAGTTTTTGGCAT	ref_1786_RC	26	22	29	16	19	19	18	23	16	23
GTTCCCGGACTTGTGC	ref_1786_RC	14	10	12	14	9	6	16	13	19	18
AAAGGGAGTTTTCATC	ref_1786_RC	49	37	76	59	42	50	25	55	35	66
GTCGGGCTTCCGTGGA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GACGTACAAACTGCTT	ref_1786_RC	16	6	12	12	9	16	10	12	6	12
TATAACCTCTACGTTT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GGAAGTTCCTGCATTA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CACATTACGTCCTTGG	ref_1786_RC	17	10	13	15	10	9	6	13	5	13
TTCGCGGTTAAGACCT	ref_1786_RC	20	7	24	17	15	21	15	21	21	14
CCTCTTGGGAATTATC	ref_1786_RC	10	13	5	9	8	8	16	9	6	3
CCAATTTGGTTTTTCT	ref_1786_RC	75	65	107	96	63	91	80	82	83	74
ACCTTATTTTTGTGAT	ref_1786_RC	6	5	7	7	8	10	4	10	2	7
AGCACCTCGAAAGTTG	ref_1786_RC	21	15	38	30	13	29	20	31	13	20
GAGCAGTCTATTTCTC	ref_1786_RC	6	4	10	6	4	8	3	7	7	9
TTCCCCCTATGTTCGG	ref_1786_RC	7	6	13	9	7	6	10	3	7	4
TTGGATTCCGGGATCC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CGAATGTTGTGTTGTC	ref_1786_RC	29	24	39	33	12	34	21	22	19	23
CATCGGATTTTGGCGT	ref_1787_RC	37	13	26	23	13	24	11	26	14	16
GCAGGATATTGGAATG	ref_1786_RC	56	28	63	50	28	50	32	54	25	43
ACAAGGGTGTAGAGAT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CAGCGATTTTGCTCAG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CCTCCCTATTACAAGT	ref_1786_RC	22	67	32	49	70	43	75	32	93	29
TATATTATAACATGAT	ref_1786_RC	31	39	46	40	25	41	29	34	29	43
CGGTCTTTACTCGGTG	ref_1786_RC	32	39	42	26	30	28	38	20	34	26
CACTCACTTGTAACTG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GACAATTGTTCCGCAC	ref_1786_RC	9	7	11	16	11	9	18	7	6	11
GTCAGGGCCGATTTGC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TATACTGGAGTCATAC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GAACGGGCTGCGCAGG	ref_1786_RC	16	25	29	25	15	21	16	25	15	27
TCCACTTTTCGCTTGT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CTCCCGTACATCTCTT	ref_1786_RC	47	41	43	49	38	25	43	34	26	30
GAAGGCGATCTGGTGC	ref_1786_RC	26	14	23	18	12	23	18	16	11	17
TGCTTGTATTTTCCCG	ref_1786_RC	108	46	141	104	74	117	78	115	77	105
GATATATTGTGGTACA	ref_1786_RC	49	36	54	53	28	53	44	45	38	44
CTGCCTCACGAAACGC	ref_1786_RC	102	65	128	114	65	105	69	98	61	78
ACCGTCAACATCCTTA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CATATCTTAATCGCCG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CAAGAAACTCCTCAGG	ref_1786_RC	5	5	3	9	6	7	2	6	4	4
TTGGTTTATGGCGGCA	ref_1786_RC	289	149	392	286	163	283	204	257	151	282
CTGATATTCCGGAGGA	ref_1786_RC	139	83	171	148	76	125	90	145	106	139
GTCTCCTGCCCCTTTG	ref_1786_RC	12	5	13	14	17	8	14	5	3	6
ATTCTTTGTCTCAATG	ref_1786_RC	79	38	78	71	67	78	64	70	52	83
AATTTACTTCTGGAGT	ref_1786_RC	53	34	78	50	33	48	24	54	36	47
AGGCTTGTCCATCAGG	ref_1786_RC	116	68	146	118	58	109	68	118	81	98
CATCGATATCACACAT	ref_1786_RC	105	80	114	109	85	84	95	110	98	83
AGGTATCTAGACCGGT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GACCATTTTGTATTAG	ref_1786_RC	54	34	53	37	27	42	23	44	29	42
AGGTGACTGATCGTAC	ref_1786_RC	49	49	64	67	32	53	44	50	30	58
CGGGCCTGTAAGGAAG	ref_1786_RC	13	6	9	4	6	12	12	7	10	5
TGAGCCGGTGATTCAC	ref_1786_RC	42	26	55	42	31	45	25	43	23	39
TCGTCGATCACCAACA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GACGTTTACTCCGACT	ref_1786_RC	9	4	12	3	3	7	11	5	5	9
GGATAAAACTCTAGTT	ref_1786_RC	96	63	123	93	61	64	54	61	68	99
TCCAGCAAAACAGGCG	ref_1786_RC	54	39	70	62	24	40	23	50	40	55
ACAGATCCCTGGCGCT	ref_1786_RC	15	10	19	16	7	15	6	12	13	6
CGGGTGCCCATACGCA	ref_1786_RC	0	1	0	0	0	0	0	0	0	0
GTTCGTGGAAAATGAC	ref_1786_RC	8	8	18	17	10	5	10	14	8	6
TTTTTTACTGTTCTTA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
ATCCAGCCCATCGTTA	ref_1786_RC	7	5	6	11	4	5	9	6	7	4
GTTCCGCGCACCCGCT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TTACGCTTTCAAGTCG	ref_1786_RC	84	60	104	88	64	79	54	101	55	80
CTTCTCCTTTACTTTG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
AACTCTTAATACTCGA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TTGTAATTCCCCATAA	ref_1786_RC	9	6	14	16	7	10	6	6	12	9
TATATGTTTAATAAGG	ref_1786_RC	34	28	64	47	21	36	32	32	41	24
TTTGCTATTTTTCTAG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TTCTCTTATACATGGG	ref_1786_RC	57	61	95	75	47	74	47	55	53	53
TTCATCCCTTCTCACG	ref_1786_RC	29	22	37	19	24	31	22	27	25	18
TGATGCATGTTCGTCG	ref_1786_RC	21	11	42	28	16	46	17	21	20	19
ACGCGAGCCGCTGACG	ref_1786_RC	1	4	4	2	2	0	2	6	1	3
TGATGACAGTTGTGCT	ref_1786_RC	7	11	11	7	4	7	8	11	9	8
TAAAAAATGTGTAACG	ref_1786_RC	119	66	127	105	66	67	72	88	54	101
GCAATTTTAGATGATG	ref_1786_RC	49	35	41	56	34	40	26	48	27	40
GTAGTATGTGTTATTA	ref_1786_RC	22	17	20	29	14	21	17	22	19	20
AGGCATGGGGCAGGTT	ref_1786_RC	1	0	1	1	0	1	1	0	1	4
CTCACTGCCAGAATCG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
AACTGCGTGCAACGTG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GCATTATGCGTGTTGA	ref_1786_RC	74	69	92	92	47	61	56	78	61	74
AGCAGTGTGCGTCTAT	ref_1786_RC	12	12	18	9	9	3	14	11	12	21
TGTCATGGAGAGCATA	ref_1786_RC	47	29	60	49	28	32	40	51	27	32
ACTTCTTTCCCCTTGG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CTAACTCGTCAGCGCG	ref_1786_RC	30	19	36	29	18	28	9	24	13	18
TTCCTCCGGTAGCAGC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TTTGTATCTCTTGTTG	ref_1787_RC	2	1	2	1	1	2	0	3	1	1
GAAGATAACTATTACT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TACATTATTGCTTCAA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GCCTCGTCGCTAATGG	ref_1786_RC	23	20	30	23	21	26	12	26	14	17
CGTCTGTACTGCGGAT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TTTGAGCTGCCGTGTT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GCAGTAGCACTACCCC	ref_1786_RC	1	9	4	6	12	2	6	2	9	5
TCTAGAAGATTTGCCA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TGACCGTTTTGTTATT	ref_1786_RC	113	75	136	145	84	139	74	111	82	85
AGTTCAGAATATATGT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
GATTCGGCGTGGCTAG	ref_1786_RC	51	37	83	70	51	63	35	61	49	39
GTTAGGTAACAAGGAC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TACATCTTTGGGTAAA	ref_1786_RC	66	46	97	84	48	73	47	65	46	63
TGTTCGACATCGCCAG	ref_1786_RC	25	16	30	25	11	14	14	27	11	18
TTTGTCATCCTCTCCA	ref_1786_RC	155	69	189	153	85	141	80	141	89	127
CCCTAGATCGAACTCT	ref_1786_RC	82	76	138	120	104	91	86	89	106	78
CATCCTCGATTAGATT	ref_1786_RC	2	6	7	5	5	9	1	2	3	7
ACATTTCCTATTAATT	ref_1786_RC	33	11	27	26	14	23	17	18	14	26
ACTATTCACAAAGGTC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
AATCCTCCCAGGTGAA	ref_1786_RC	16	13	10	12	18	5	16	14	7	9
AAGCGTGTCTTTCACA	ref_1786_RC	18	20	29	29	12	19	13	17	18	28
CGGCATTGGTTTGTGC	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
ACGTTGTACAGCTATA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CTGACGCCCCAGCTGT	ref_1786_RC	32	26	51	46	32	30	16	32	27	29
TCTCAGCTTCTTATCT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CCCTTTTTAGGTAGTT	ref_1786_RC	28	27	40	33	31	28	34	29	28	30
CTACTGACTTGGATCA	ref_1786_RC	3	6	12	14	5	3	6	18	5	3
TTTCGCGCATTTCAGC	ref_1786_RC	4	2	6	6	2	3	1	3	2	4
GCACTGCTAGGAAGTT	ref_1786_RC	15	5	16	20	10	8	10	19	7	11
ACGGGTCACCGGAACT	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CGTGCTCTCAATGTTA	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
TGCGGATACGTTCACC	ref_1786_RC	69	66	75	107	89	66	58	70	51	55
TTTCAGCTGCCGTGTT	ref_1786_RC	52	36	73	53	35	58	36	57	46	61
ATGTCTCCAGCTGATC	ref_1786_RC	8	1	6	4	9	10	6	4	8	7
CTTTTCTGACCAGGCG	ref_1786_RC	0	0	0	0	0	0	0	0	0	0
CACCTTCAATGGGTGC	alt_2040_reverse	29	11	24	21	12	27	9	11	14	17
CCTGTCTGTAGCCCCG	alt_2040_reverse	242	192	294	277	221	221	213	259	192	235
CTGTGCACCCCTACTC	alt_2040_reverse	22	13	31	26	17	19	14	22	15	21
GTGGGATTGGACACTC	alt_2040_reverse	150	44	180	176	65	145	63	139	86	149
TAATCATACTGTTTTG	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
TTAATATTTGCACCGA	alt_2040_reverse	33	11	40	39	13	33	9	35	8	21
AGTTTTGTTACTTTTT	alt_2040_reverse	12	16	16	26	4	17	5	12	4	17
AAACTTCAGCCTCAGC	alt_2040_reverse	32	10	28	44	4	28	9	31	6	25
GTTCCCTCAGCTTTAC	alt_2040_reverse	344	125	443	375	124	354	131	324	124	317
ACGATGGCTTGGGACC	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
TATAGCATGCAAAGCC	alt_2040_reverse	71	36	80	59	22	67	26	70	29	60
CAGTAACAAGAGTTGA	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
GTTCATTGAAGATTCT	alt_2040_reverse	12	5	12	9	2	6	2	7	3	6
ATGTCCAGCTGCCGAG	alt_2040_reverse	1532	522	1920	1679	521	1499	594	1504	563	1550
GTGCCTGAACTTCTGG	alt_2040_reverse	35	9	32	38	6	24	13	33	2	26
TCCGTTTTCTAGAACA	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTTAGTTCCCACT	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTAATCTTAACTT	alt_2040_reverse	53	28	91	69	32	59	25	63	27	61
CGGATACGCATCCATT	alt_2040_reverse	340	97	395	322	89	319	93	289	125	260
TATGGGGCCCTACGCG	alt_2040_reverse	104	42	122	107	21	86	22	95	44	112
GGACCTCCTTTCAACG	alt_2040_reverse	87	36	90	78	24	76	31	77	22	70
TGCCACATTCCCTTCG	alt_2040_reverse	39	17	69	57	23	48	29	48	36	45
ATGAGAATGCTTTTGA	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGGTTGCCAAGTG	alt_2040_reverse	68	44	95	84	29	72	32	65	41	62
CGCAACGGTAGCGGAT	alt_2040_reverse	37	22	44	47	16	26	15	37	19	41
TTCTACGGGCAGCAAG	alt_2040_reverse	181	67	250	183	39	178	75	122	75	153
ATGTCCAGCTGCCAAG	alt_2040_reverse	0	0	0	0	0	0	0	2	0	0
AATACTCATCCTCCTC	alt_2040_reverse	58	24	68	56	15	51	26	67	26	51
ATTTGACAACAAGTCA	alt_2040_reverse	73	30	114	88	46	76	25	99	38	88
ATTTCAATCCAATGTG	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTATCTTCTTAA	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
CGTGCTTAGTGCCCTG	alt_2040_reverse	162	57	250	206	66	210	58	161	70	159
AAGGTCTCAACTCACT	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGAGCCTGGGGAT	alt_2040_reverse	53	16	63	58	24	56	29	46	17	45
AGTATTGATAGCCTGG	alt_2040_reverse	218	69	225	225	70	203	70	191	79	175
CTGTCTTGTCTGTCTT	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
GGAAGTATAGCGATCA	alt_2040_reverse	5	0	13	1	2	9	2	12	1	3
TATCCTGGTATGGCTA	alt_2040_reverse	150	45	140	143	54	138	59	141	45	119
TGCGCTGTCCATGCTC	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGGTGTTCCCGGC	alt_2040_reverse	88	22	110	104	34	71	26	60	33	65
ACCACTGGGATTTTAG	alt_2040_reverse	343	118	365	311	104	267	145	302	120	235
TCGTTATATTACTGAG	alt_2040_reverse	328	102	347	334	96	285	136	315	107	268
GGCATGTGTTCTTCTA	ref_2040_reverse	771	253	971	863	277	785	277	757	291	699
TGGCCGTATTGCGCGT	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATATCTTCAATTTGCA	alt_2040_reverse	28	12	28	44	10	28	10	35	10	29
TTTCGATTATTATCAT	alt_2040_reverse	47	7	59	41	14	36	18	46	18	43
GTTGTATCCTTTGCTT	alt_2040_reverse	153	57	183	152	65	139	64	131	51	128
ACTCTTGGGTGCAGAT	alt_2040_reverse	61	17	83	97	14	50	28	78	29	63
CCGTAGACCCGTCTAT	ref_2040_reverse	63	49	85	74	55	63	48	62	63	55
AGTCTACTCGTCTTCG	alt_2040_reverse	155	74	196	191	58	149	62	166	73	144
CGTTCTATCTCATTCC	alt_2040_reverse	263	88	304	307	94	254	102	243	111	226
TATCAATTTGGATTAG	alt_2040_reverse	191	82	257	208	89	199	73	175	82	169
ATTCCATCTCCGTCTT	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTGACATGTCTTA	alt_2040_reverse	111	38	117	119	53	101	44	109	30	101
GAATTAACCCCTCTGG	alt_2040_reverse	34	16	41	27	12	30	12	25	11	19
TGGTGCAGCAATTCCC	alt_2040_reverse	157	56	236	198	62	162	76	189	71	153
AGTCTTGTCCTAATGC	alt_2040_reverse	23	16	27	19	6	24	4	15	10	24
TCGTGTTCACATCGCT	alt_2040_reverse	132	70	168	131	41	139	61	115	49	110
AACATTGGTCTCGGCA	alt_2040_reverse	555	207	707	592	223	565	208	577	170	455
GGTCCAATGGAATTTA	alt_2040_reverse	39	12	62	52	10	30	22	40	8	46
TGGCTCTGCTACTCAG	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
CCGGGGCTGAGCAGCA	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
AGGGACACGGGTCCTT	alt_2040_reverse	17	12	12	20	5	10	5	23	11	10
TGATCTTTTAGCCGCA	ref_2040_reverse	481	169	599	503	179	467	177	440	182	394
TTTAGTTATTCCTCCG	alt_2040_reverse	235	84	291	222	103	215	93	232	96	177
ACGTACGACGGATGTC	alt_2040_reverse	164	47	243	137	52	180	50	180	46	156
CCGAATCGTCGGGTTG	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
GAAAGTATCGCTTTTG	alt_2040_reverse	136	45	146	133	55	101	84	117	58	111
CGTCTAACTGCGTTCC	alt_2040_reverse	59	39	66	85	28	53	25	67	37	62
TTTATAGATATCACTG	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
GCTAAATCTTTTAGAA	alt_2040_reverse	130	43	127	121	44	109	59	104	32	100
TTTTTGGATTGTTTAT	alt_2040_reverse	4	3	2	11	5	4	2	3	3	3
ATTTTTACCGCTTCCG	alt_2040_reverse	10	1	23	8	10	16	4	12	5	18
GGATACAGTTCTTGTG	alt_2040_reverse	57	20	64	57	19	55	19	53	25	32
GACCTAAGCCAGACTC	alt_2040_reverse	199	65	268	214	91	215	61	248	95	183
GGCGCCGTGAACTCGG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
CGTAGCTTGGTATCAT	alt_2040_reverse	80	34	113	102	42	74	43	72	48	90
TATGGACCCTGATGTG	alt_2040_reverse	163	46	217	152	55	190	52	177	66	165
ATTTGGCTATGGCGCC	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCCAGCTGCTGAG	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTGTTTTCAATCC	alt_2040_reverse	156	48	190	209	49	191	66	186	66	169
TTTATCGGAGAGACCC	alt_2040_reverse	36	18	63	65	16	51	19	44	16	51
GTCCGGGTGACCCATT	alt_2040_reverse	42	9	45	35	16	22	9	35	10	32
CATTGGTGTATTCACT	alt_2040_reverse	93	40	137	125	25	106	42	89	44	112
GATAGACCGGGGTTGG	alt_2040_reverse	74	42	62	70	32	47	30	50	41	67
GACAACTCGGGCCTTA	alt_2040_reverse	27	12	35	41	13	43	14	28	13	29
GGTCCGATGGAATTTA	alt_2040_reverse	310	106	360	356	102	279	85	295	109	317
GTACATTCTGCTTTCC	alt_2040_reverse	90	36	105	97	22	71	25	77	27	76
GTACTACTCAGTCTAC	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
TCCAATCTGATATAGT	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
TATAGCATTAGTTATC	alt_2040_reverse	167	55	243	164	73	164	52	164	82	172
TCGTGATGGGTCCCAT	alt_2040_reverse	0	0	0	0	0	0	0	0	0	0
GGATTAACACTCGCGT	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
GTCCCATCCTTCCTCG	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
TTGTTAACAGACAGTA	alt_5322_RC	25	51	21	21	42	17	49	20	33	22
CGTCAGGAATCTCTAT	alt_5322_RC	9	9	6	8	11	3	15	10	11	13
GTACTCTACTTCTTCA	alt_5322_RC	1	8	6	3	4	2	4	5	3	1
GAACTGTCTTATTTCT	ref_5322_RC	80	133	99	103	142	103	146	96	142	73
TCCCGTGGTGTGCATA	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
TCGCTGGTTGTCTTAA	alt_5322_RC	3	21	6	13	19	13	25	10	29	9
TGCGGTTCATGACCCG	alt_5322_RC	12	51	13	15	34	18	43	29	35	16
AACTCCTGTACCTGCA	alt_5322_RC	4	6	6	2	7	6	1	0	18	2
ACCTTATGGTCTTGAG	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
TAGTTATTGCTTCTCC	alt_5322_RC	20	44	27	20	32	17	30	19	35	18
AAGTCATCCCTTCCAT	alt_5322_RC	7	5	8	9	10	11	16	4	18	4
CCTCATTACCTTTAAT	alt_5322_RC	8	32	20	22	22	20	34	13	34	11
GTCCGCTTACGGTCTT	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
GCATAATGCGCAAGCC	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
ACGGTGTTTCATGTCT	alt_5322_RC	5	13	7	4	12	10	16	7	9	9
TGTACCGACCTGCCTG	alt_5322_RC	4	15	6	6	17	4	20	7	13	3
TTAAATTTTCGGGTCT	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
TATCTCCGCTCGTTAA	alt_5322_RC	8	8	9	6	8	1	8	5	6	7
CGGCTCCCTGCCTAAT	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
TGCACCGTCGTGGCCT	alt_5322_RC	25	73	35	31	77	21	50	19	48	29
CGATAACGTAGGCAGT	alt_5322_RC	18	15	15	19	15	10	40	17	10	10
TAAACAATGGATGCGT	alt_5322_RC	22	23	27	21	34	18	24	17	17	15
ACTTTTTTAGATGTCA	alt_5322_RC	25	30	25	20	34	17	28	15	34	18
CGAGTTCAAGGTATAC	alt_5322_RC	17	25	18	27	20	18	33	13	38	16
GGCTAGCGCATTCTTT	ref_5322_RC	35	73	62	35	77	46	61	30	60	41
CTCCGTTGGGCGATAA	alt_5322_RC	6	3	6	3	4	2	7	3	5	5
AATTCGTTAGGGTATC	alt_5322_RC	13	20	21	6	19	10	14	12	16	4
CACTTAGTTTGTACCG	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
CAGTTAGCTCCTTAGG	alt_5322_RC	7	16	8	2	15	4	16	7	18	13
TTTCTCCTCAAATGTA	alt_5322_RC	16	9	5	4	17	4	16	8	9	11
AATCACTTGCGAGATG	alt_5322_RC	3	0	1	2	4	3	5	2	2	1
ACAGGGTCTGGCTCAC	alt_5322_RC	15	57	37	17	54	21	55	21	44	26
GGCTTTTGGTAATAAG	alt_5322_RC	33	32	26	28	48	16	46	19	38	23
TGCTCTGTAGTGAAAG	alt_5322_RC	10	26	23	15	21	11	26	17	25	11
CTCACGTCCTGCGCCT	alt_5322_RC	41	98	43	48	105	63	108	47	114	31
ACGGTACTGCCGCCGT	alt_5322_RC	3	10	0	2	5	2	12	1	5	0
GTGCTAGGTTCATATT	alt_5322_RC	10	18	7	8	16	8	19	2	25	11
TGTATCAGAGTTATAC	ref_5322_RC	10	17	6	10	14	1	11	7	25	7
GTTTTATGTTTCTGAA	alt_5322_RC	28	51	50	32	56	36	39	26	44	43
GGAATGGATGCGCAAT	alt_5322_RC	3	4	6	6	4	4	5	3	6	4
CAAGCTGTCAGCCCTT	alt_5322_RC	17	30	18	27	32	26	32	11	48	9
GGTCTTACTTTTGGAC	alt_5322_RC	15	26	35	19	35	12	21	15	28	15
TGTTTGCAGCGTGTGC	alt_5322_RC	30	56	21	24	53	26	40	20	57	29
CGCCGGTTTCTTGGGT	alt_5322_RC	32	43	45	28	43	33	46	27	60	31
GAACGAGATGACTCAC	alt_5322_RC	114	138	139	82	126	108	142	75	144	117
CTTATTACATTTTAAC	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
CCATTTTGCTACCCCC	alt_5322_RC	3	7	6	3	6	3	4	2	4	5
GTCCTATGGCTGAAAC	alt_5322_RC	29	37	35	24	37	26	40	22	49	26
CTTTCAGCTTATACAC	alt_5322_RC	20	47	21	25	49	24	34	15	48	15
TAGTAAAGAGTGATAG	alt_5322_RC	2	10	10	3	12	5	12	1	9	11
TCTTCCATGGCTCCGT	alt_5322_RC	21	32	28	15	35	32	32	21	30	27
GCTGCTATATCTCCCG	alt_5322_RC	0	2	1	0	0	1	1	0	2	1
ATCCTGTCAATATATT	alt_5322_RC	25	65	30	27	65	33	38	17	58	28
ATCGAGCGATTTCAGG	alt_5322_RC	45	72	43	44	80	40	75	37	93	41
AGGGTGCGCTGTTTCT	alt_5322_RC	30	65	29	26	57	22	52	26	67	32
TGAATTCCATTTAGTG	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCTTTTGTAACA	alt_5322_RC	28	56	30	26	69	21	86	24	69	28
GCCGTGATCATCGTGA	alt_5322_RC	31	64	38	29	67	33	52	32	68	36
ACACGTCCTACCTATA	alt_5322_RC	27	35	30	24	37	26	33	13	33	15
GTCATGTACGGGCTTC	alt_5322_RC	0	4	3	1	7	2	3	0	3	0
CAGCTGTCTTACACCC	alt_5322_RC	22	49	33	26	49	17	62	20	66	16
CAAGAATCCTTGTTAT	alt_5322_RC	114	174	142	128	167	125	227	108	225	85
GCGTGAGTCACTTGGA	alt_5322_RC	26	37	25	19	36	26	39	19	36	13
TATTTAGAGGAAGTTT	alt_5322_RC	34	58	38	35	57	29	43	27	58	29
AGTACCAGCATTCCTG	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
GAATCATTCACGTCGC	alt_5322_RC	0	0	0	0	0	0	0	0	0	0
TGCTCTCGCTTCGGAA	alt_5322_RC	21	54	45	27	52	35	55	22	42	42
GTCGCCCTACGGATTG	ref_5322_RC	37	86	63	45	86	34	76	45	78	37
TAATCGTCCGTGTACG	alt_5322_RC	19	36	17	18	31	16	24	22	36	11
ATAGGTTTCACGAGTT	alt_5322_RC	217	351	271	224	395	210	369	204	408	197
AGGGCAAAGTGGTGTA	alt_5322_RC	9	21	8	5	12	5	7	5	16	3
CTCCCGAAGCCGCCTG	alt_5322_RC	30	65	35	43	58	32	75	34	60	21
TGCCTTAGGGGATTAG	alt_5322_RC	27	69	34	41	72	24	92	23	73	18
CTTTTCGGTCTAAGCC	alt_1359_missing	56	90	56	61	89	52	92	52	86	59
TTGTAACCACTGATTA	alt_1359_missing	32	59	36	33	56	30	56	26	67	26
CTCGTCCCTCTGGACC	alt_1359_missing	32	56	41	31	54	25	67	33	66	35
ATTGAAGGTCCTTAGC	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
GCTCACAGATCATGTC	alt_1359_missing	21	35	28	17	26	22	25	20	34	9
CTGCCTCGCACGACCG	alt_1359_missing	13	11	18	11	34	10	24	11	24	12
CAACGTTCTATGCCTA	alt_1359_missing	5	8	9	3	12	10	20	7	11	5
GTACAGACCTGACGAT	alt_1359_missing	35	46	36	23	53	19	36	17	48	31
ATCAGGTTTCTGCCGT	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TTGCTGCTGGTGCGCA	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
GCTGCTCTGTGTATTG	alt_1359_missing	17	45	38	21	71	22	59	27	43	16
GACAGAATCTTAACCG	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTCGCGCCTCAA	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TGGATTCAAGATGCTG	alt_1359_missing	17	19	18	14	27	14	28	6	22	8
TGTCTAGCTCCTGACC	alt_1359_missing	1	4	1	0	3	0	2	1	5	1
GGGTAGGCCGTTTGTC	alt_1359_missing	23	45	43	31	51	37	57	25	41	27
TAGGGCTCCACTTTAT	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TTCAGATCTAAAAAGA	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
GAGTCTACGCCATGGA	alt_1359_missing	0	0	0	2	2	0	0	0	2	0
TCGTCCACCCAAGTCA	alt_1359_missing	3	4	4	3	8	4	8	3	2	3
CGTTTTTGGGCTCGCA	ref_1359_missing	47	83	67	49	72	42	114	55	80	51
GCTTTCTCGGACGTCT	alt_1359_missing	41	74	44	41	75	28	87	38	97	48
AAGCACCGCTCCTCTG	alt_1359_missing	3	8	3	1	9	3	6	4	7	6
TTCAATACAAGTGCTT	alt_1359_missing	6	7	4	6	5	5	10	4	9	5
CTGTCTATGCATTTAT	alt_1359_missing	9	9	7	6	20	8	9	5	18	2
GCCTTGCTAGGTTAAA	alt_1359_missing	16	34	14	22	36	16	27	12	29	10
TCGGACCAATTATAGC	alt_1359_missing	21	48	35	20	51	17	53	28	66	15
TTACTGTTTTCTAGAG	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TTGGCATATGCATGCA	alt_1359_missing	20	32	30	22	46	16	40	14	34	22
ATTTACATTAATCATC	alt_1359_missing	23	54	18	21	41	18	40	25	45	20
GTTGTAGACTAAGCCT	alt_1359_missing	23	36	31	25	41	25	33	22	56	19
TATGGAGATAAGCCGT	alt_1359_missing	28	28	33	19	23	22	27	18	30	22
TTTTATGAAGTGATAT	alt_1359_missing	31	84	43	44	92	58	121	52	109	35
ATGCCAATAAGCTGGG	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
ACAGTGTGAATTCCTC	alt_1359_missing	86	149	97	84	153	76	164	91	169	93
GAACAACCATTTGGGC	alt_1359_missing	58	116	66	64	85	61	105	50	101	57
CAACGAGGACGTTTGC	alt_1359_missing	1	6	1	4	3	1	6	0	3	1
GATCCTTTAAGTAGGG	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TGCGGATGAGGATTGG	alt_1359_missing	32	42	46	24	52	21	64	29	55	28
CAATAATACCCTGGTC	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
GGGTATCGTTCGGAGG	alt_1359_missing	3	16	7	7	15	7	9	10	21	1
CAAGAAAGGAATGTAA	alt_1359_missing	9	20	12	8	13	9	23	10	17	12
GCATGGGTAACATGAC	alt_1359_missing	9	7	8	3	9	10	12	8	13	9
CGCTTCGACAGTGGGC	alt_1359_missing	40	75	56	36	82	59	63	44	75	35
ACGCCCTACGACGCTT	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TGTCAACACTCCAGGT	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCGGGGTGTTTC	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
AAGCCAGGCATGGCTT	alt_1359_missing	16	23	19	7	10	12	23	5	24	9
TTCCGTAGATTCCTTC	alt_1359_missing	1	1	2	1	4	0	2	1	3	0
GGGCGGCCCTTTATAC	alt_1359_missing	55	91	81	54	84	65	70	57	91	42
GTTTTGGTTCACTGAA	alt_1359_missing	5	8	9	9	13	2	17	16	7	8
CTAGAGGATGGTAGCT	alt_1359_missing	1	2	1	0	2	0	2	0	1	0
ACTCTATATGGTGCCA	alt_1359_missing	37	82	39	30	90	26	79	24	82	25
CGCGTTATTTCTTTAT	alt_1359_missing	0	0	0	0	0	0	0	0	0	0
CTCTCTGGAAGCTCAA	alt_1359_missing	10	42	16	13	49	17	39	20	30	19
AGCGAGACCGCACCCT	alt_1359_missing	19	43	17	6	27	8	33	12	41	10
CCTGCTGCCAGTCCTT	ref_4246_missing	23	23	13	17	26	9	30	13	19	26
CGGAAGAAGTATTCGT	ref_4246_missing	19	33	18	16	49	27	32	18	42	18
CGCTAGGGTTTTATGT	ref_4246_missing	17	42	30	20	36	9	40	23	33	15
TGCATCCTCCGCACTC	ref_4246_missing	11	24	29	17	20	23	29	16	26	12
GCACTCTATTTGACGG	ref_4246_missing	19	13	8	12	22	10	14	9	19	8
GAGTCTGTAGTCTGCG	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
ACCCGGACATGGTGAT	ref_4246_missing	45	72	45	37	53	33	67	29	54	29
TTCGATTTTGAATTTT	ref_4246_missing	11	8	6	1	13	8	17	8	18	6
CCGGTACTCTCAACTC	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
ATCGTTTTTGTTCTCC	ref_4246_missing	14	24	27	18	17	16	19	15	35	9
TCGTCGCTCCCTGGAC	ref_4246_missing	1	5	3	3	5	1	3	4	10	4
CGTTGTGTCTTCATTG	ref_4246_missing	10	11	12	16	9	4	12	8	14	9
TTTCGCGTCCGCTGGA	ref_4246_missing	6	18	12	6	16	9	16	7	9	10
CTGCCATGGAATGCTG	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
TTTAAAGGTTTGACTA	ref_4246_missing	25	34	28	32	36	32	46	22	55	31
CGAAGATCAGCCATTA	ref_4246_missing	13	9	9	11	6	10	8	11	7	10
CAGTTGTAGCCTTCCA	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
CAGTTGGTTACGTATT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
GAGCTTCCTGATAAAG	ref_4246_missing	1	4	3	4	6	1	5	1	7	7
GCCGCGATTTGGGAGA	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
AGTTTTTTTACTTGCA	ref_4246_missing	12	20	22	14	21	16	20	14	20	19
TGGGCGCGAGAGCCGG	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
CATGATTAACAATCGT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
GCCGCTTAATAGCAAT	ref_4246_missing	9	24	17	9	29	4	32	4	27	8
GTTATTTCGTCAGACG	ref_4246_missing	26	24	38	14	35	30	48	25	40	19
ACGAGCCGCCGTTCTA	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
AGCGGGGGTATTCGTT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
TGCTCCACGTCATTGG	ref_4246_missing	8	17	18	11	21	12	30	9	26	11
CTCCCCTGATTTTAGC	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
GGAGTTAAGTCGTGTG	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
GGGTATCAAAGTCTCA	ref_4246_missing	7	7	13	6	8	6	8	5	2	3
TTCCCCTCTCGCCCAT	ref_4246_missing	7	11	14	5	7	8	14	5	15	3
GCCCGTCGTGATTATT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
CCGAAGCCAGAATAGC	ref_4246_missing	11	17	19	13	9	16	12	10	14	8
GACGCAACCTAGGTGT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
TAGTGCGCTCCATGGG	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
TCTGGGACACTATTGG	ref_4246_missing	24	30	10	18	23	14	31	14	34	16
AATCCCCATACCAATA	ref_4246_missing	6	12	9	0	15	8	14	6	20	5
TACGGAGCCGAGAGTC	ref_4246_missing	0	2	10	2	7	2	5	1	5	5
CATTTCTGCCCGTTCC	ref_4246_missing	0	0	0	1	0	4	2	2	0	1
TCAAACTCATGGATGG	ref_4246_missing	40	81	63	67	75	43	66	42	74	53
GACAGGGGTTGGGATC	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
CTTGTGGACGCTAAGA	ref_4246_missing	20	24	16	20	30	17	40	19	38	5
TTGGCACGTCTACTTG	ref_4246_missing	1	6	8	5	4	3	7	0	6	0
CGAGAAAAAACGGGTC	ref_4246_missing	15	38	44	21	22	23	33	23	30	10
GCAACTGTTTACCGCG	alt_4246_missing	4	7	4	4	7	1	5	1	13	0
ATTCTTAAGTTCAGGC	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
GCATCACCAGCGGTTC	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
CTTCGGTAGGTGGTTA	ref_4246_missing	13	13	18	15	16	10	20	13	26	9
TATATTTAATACCGTG	ref_4246_missing	8	11	9	6	17	16	20	5	18	13
CCTCGATTAGGCCGCA	ref_4246_missing	8	8	7	8	6	9	7	3	10	5
ATTTAGTCTCTCGTCG	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
TTACCTGATGCTGCAT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
CACTCACCAGACCATT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
GTAATTATCCCACTCT	ref_4246_missing	0	0	0	0	0	0	0	0	0	0
CTCCTCAGTCAGTACC	alt_6081_new	3	10	13	5	3	4	3	11	8	10
AGTTGACTATACAATG	alt_6081_new	127	63	143	127	72	116	58	118	84	114
TACTTGGCCAAGGAGC	alt_6081_new	46	18	55	55	28	54	31	56	22	37
CCGGGGTTGACTAAGT	alt_6081_new	86	80	115	106	74	69	81	70	73	72
TGTTATGAGAAGTTTT	alt_6081_new	38	14	30	44	16	32	23	40	16	19
CACCATTGCGTAGATA	alt_6081_new	114	54	122	110	55	110	47	97	68	83
TCACAAGACTGTTTAT	alt_6081_new	11	8	49	25	10	24	8	33	15	25
ACGTACCTGTTTATCT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GTCTGCGTTATGCATC	alt_6081_new	4	1	6	1	0	2	0	2	0	1
AATAGTGTAGCTTTCG	alt_6081_new	66	29	82	58	36	36	16	61	32	51
CGAGTCACCGTGAAGT	alt_6081_new	51	26	53	59	29	49	45	34	31	26
TGGATGGTTTTGGCAC	alt_6081_new	17	4	10	8	4	10	2	10	5	9
GGAAAAATGGGTAATA	alt_6081_new	187	86	270	215	84	207	104	200	92	163
ATACCAAGAAGAAGCC	alt_6081_new	19	11	24	24	8	28	14	28	15	15
AGATGTAGCTTCCAAC	alt_6081_new	445	168	472	458	213	401	200	343	216	357
GTGGCGCATCTGCCTA	alt_6081_new	23	18	51	34	19	39	10	39	22	33
CAAAGTCACTCTCCAC	alt_6081_new	9	21	4	11	13	5	19	9	19	6
TCGACGCTATGTTTGG	alt_6081_new	150	69	187	149	66	116	90	133	75	130
GTGCTAGGGGTCAATC	alt_6081_new	216	125	271	241	123	235	97	219	112	208
ATGGCGAGCTAAGCGT	alt_6081_new	34	21	40	54	19	45	23	44	17	32
TCCCCTGTTTGTCGAG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
ACTCATTCATCGACGG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
AATAGCGGCTAGCGAA	alt_6081_new	59	19	59	52	16	42	14	48	27	60
CCCCAGCGTACCGGGA	alt_6081_new	297	124	305	310	124	271	144	266	157	244
AACCTTACATTTTCGA	alt_6081_new	0	0	0	0	0	0	0	0	0	0
AAGTTGGAGGTAATAA	alt_6081_new	25	11	22	22	7	19	10	21	10	17
TGGCCAACATCCGGAT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GTCCATGTGCCGGTCG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GGGGATATAAGCTCTT	alt_6081_new	52	17	52	48	19	61	10	57	26	43
GCAGGTCACGATGTTC	alt_6081_new	216	91	308	282	120	237	139	254	119	262
CCCACTCAGGGGCGCT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TTGCAGGTTCTCCGTG	alt_6081_new	79	36	103	82	34	73	44	84	46	75
TCTGTTTGGTAGTATG	alt_6081_new	46	28	45	37	7	19	30	38	33	31
AATGTAACGTGTGGTG	alt_6081_new	20	6	10	7	10	11	6	20	5	11
GTTTTTGCGTCAGAGT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
ACGGTTTTATAATTCA	alt_6081_new	49	13	51	43	17	35	30	30	30	30
GGGGTCAGGTAACCAA	alt_6081_new	35	17	29	33	11	18	19	24	2	23
GACATAGTTGATAGAC	alt_6081_new	56	47	89	67	38	83	29	67	32	77
ATTTCTCATTCTTACT	alt_6081_new	106	48	155	128	52	118	54	123	49	120
TCCTATTATGCTCAAC	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TACATCCCTTCGTTTC	alt_6081_new	0	0	0	0	0	0	0	0	0	0
CACGGACACACCGAAC	alt_6081_new	84	63	101	109	61	77	73	63	93	86
CGTAACCATAGTTCAA	alt_6081_new	46	22	47	36	19	35	34	35	25	34
CTTCACAGACCATAGC	alt_6081_new	0	0	0	0	0	0	0	0	0	0
CTGCTGACCATCCTCC	alt_6081_new	14	14	16	18	23	13	15	14	23	7
ATCGTTTGGAAGTTAG	alt_6081_new	140	92	183	131	82	135	103	141	101	131
TGTTGTAAGTTGGCGC	alt_6081_new	0	0	0	0	0	0	0	0	0	0
CTCTCGGAACTACTTC	alt_6081_new	88	23	127	127	32	100	66	90	59	77
GGCGTGTTTTACACAT	alt_6081_new	297	139	405	303	144	250	150	289	153	272
GTTCAGTCCCGGAAGA	alt_6081_new	0	0	0	0	0	0	0	0	0	0
ATGACGCTTGCCTCTG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
CTCCGTGCGCCTAGTT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
AGGTTCGCAGCTTACC	alt_6081_new	92	82	108	88	75	75	84	84	82	91
CGGATGAGCACGACCA	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GTCCTGTTATGTTACG	alt_6081_new	175	90	174	174	103	141	88	147	71	148
CAACAGAAAGCTATCA	alt_6081_new	62	22	63	49	28	51	31	53	19	48
CTTAGTCTCAATTCGT	alt_6081_new	77	43	91	75	43	78	38	70	51	82
ATTTGTACTCGATAAT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TATCAATATGTGGCGT	alt_6081_new	9	2	16	11	4	11	8	2	4	9
AACCCACCCTATCTAG	alt_6081_new	50	18	68	58	23	59	30	53	31	35
TTCGTGGACACTGGTA	alt_6081_new	85	30	80	67	35	53	40	66	38	70
TTAGCTTCGGTATTTT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TTATGTTTTGCTTAGC	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TTATCAAGGAGCTCGC	alt_6081_new	169	78	230	198	91	167	106	191	103	151
GAGACGAGGGGTAACA	alt_6081_new	29	8	28	18	6	18	7	26	16	14
TTGTGGAGGGCTACCG	alt_6081_new	316	175	447	372	137	359	152	370	171	300
ACTCCTTTAGATTTGA	alt_6081_new	20	6	31	27	17	29	17	28	15	30
CGACCGCGATTGGTCT	alt_6081_new	51	29	62	38	29	51	22	53	22	33
TTTAGGTCCTGTGGGG	alt_6081_new	37	24	65	47	24	48	36	44	19	42
TCTCCGTGCCGTGCTC	alt_6081_new	14	3	27	23	9	11	10	21	7	13
TGAGCTATCCTTCGCG	alt_6081_new	45	19	62	53	18	46	23	39	15	42
CGAAGTCAATGTAGCT	alt_6081_new	163	65	179	153	86	144	98	155	95	160
CGGCCTTATCACCTGA	alt_6081_new	111	57	115	116	43	88	43	107	56	98
TAATACAGCTAACGGC	alt_6081_new	0	0	0	0	0	0	0	0	0	0
ACTTGGTTATGCAAGC	alt_6081_new	78	27	95	72	36	75	44	73	41	62
GTCGTGGTGATTGTGT	alt_6081_new	21	8	24	18	10	15	8	22	5	14
ATTGTTATCCTCTCTG	alt_6081_new	10	5	11	14	3	16	2	8	2	13
TTATTGAGTTTATTGC	alt_6081_new	68	30	81	85	33	61	36	68	41	76
CACACATCGGTTGCTC	alt_6081_new	5	16	17	12	24	9	17	9	24	8
ATGCTTCACATGATAT	alt_6081_new	16	11	15	20	4	14	12	18	7	15
TGCATCGGGCGTAGTG	alt_6081_new	73	56	70	53	32	71	32	71	33	56
CTATACCTGCTATTTA	alt_6081_new	130	52	152	113	53	98	45	131	56	112
GTTCCCTCCAGCCGGA	alt_6081_new	61	35	72	61	29	55	41	52	31	54
ACTATCTAATTGCTAG	alt_6081_new	67	37	81	83	34	67	42	68	38	56
TACGGCTCTCCCCGAG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
ATCAATGATTTGGTGG	alt_6081_new	40	20	36	47	24	39	27	32	22	33
TGATTCCAGTGTCCAG	alt_6081_new	49	20	65	53	22	47	18	60	24	47
TTAATCTACGGGAGAT	alt_6081_new	50	25	78	66	28	42	23	51	24	53
GTACACGCTGAGGCCC	alt_6081_new	35	58	32	37	56	27	61	27	78	31
TTTTGGAGTGGTCATC	alt_6081_new	13	2	11	13	2	9	4	11	1	5
CATCGTGACTTACGCG	alt_6081_new	52	33	51	67	25	44	32	31	35	45
CTGTCGTGTGGTGGTT	alt_6081_new	73	24	74	58	32	67	29	69	30	66
GGGTTGATTTCTGCAG	alt_6081_new	54	22	62	63	18	53	32	59	21	63
ATTGGCAGCAACCTAT	alt_6081_new	10	2	4	7	5	10	2	3	6	4
TTATCTCTATTGCGCA	alt_6081_new	51	34	60	47	22	44	37	49	37	44
CTCAGACCAGTGCAGT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GGTCATACCCACCTTT	alt_6081_new	40	13	37	25	16	23	14	23	26	23
GGGAGGCGATAATCTG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
CAAATTTTACTCATAT	alt_6081_new	67	36	91	83	30	66	54	82	31	86
TAATTCCCAGTTGCTT	alt_6081_new	56	13	49	46	21	45	17	54	14	30
ATAGATCTGAACCGCG	alt_6081_new	0	0	0	0	0	0	0	0	0	0
AAGATGTACGGGTTTA	alt_6081_new	86	35	64	68	27	60	34	66	28	44
TGGTCCGGACTTGCAG	alt_6081_new	44	17	46	39	11	36	25	32	16	41
TCCTTATCGATATATT	alt_6081_new	46	28	73	56	25	50	31	48	36	55
AGAAGTAGCTTCCAAC	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TGGGTCTGCATCATAC	alt_6081_new	33	21	37	39	22	31	22	33	25	31
GAAAGGACCAGACATT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GTGCTACGCTTCCCGC	alt_6081_new	17	31	23	23	19	13	23	7	20	15
GTTTTTTCGTTCTCGT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GAAGATTGCGTTTCCT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
CCCCCTGGCGCTCATG	alt_6081_new	25	19	38	32	17	28	19	34	25	25
ATGGTATCCGACGCCA	alt_6081_new	33	12	39	32	19	34	22	30	24	28
CCCCCAAGACCGCGTG	alt_6081_new	41	16	59	50	19	30	15	47	21	39
TACCGCTCCTTTTTCG	alt_6081_new	125	128	162	120	128	92	109	122	101	129
TCATCGTGCCTTCAGT	alt_6081_new	483	219	591	544	208	493	261	484	212	458
TCGGAACTCTTCTTGG	alt_6081_new	226	73	247	229	107	169	64	172	101	155
TGCTCTCGGTGCGTTT	alt_6081_new	34	30	49	46	8	29	18	47	26	31
AGCAGTCTAGGTCTCT	alt_6081_new	14	16	15	23	12	18	17	11	9	22
CGGGTTCCTATAGCGA	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TACGGACAGTACCCCC	alt_6081_new	22	18	37	24	22	22	17	16	34	26
TTTTCTACGGCAGTTG	alt_6081_new	147	60	152	128	68	125	64	134	65	120
GTTGACCGTCGTGGCG	alt_6081_new	71	44	107	73	57	81	46	74	59	69
TGGTCCGACTGTGGAT	alt_6081_new	35	80	41	42	61	45	80	27	95	28
GCTGTAGAGTATTTCT	alt_6081_new	15	11	8	21	4	18	8	18	7	20
GTCGGCGGTTCATCCT	alt_6081_new	33	16	41	38	13	37	19	43	21	26
ACTGCGCTATCAATAC	alt_6081_new	71	32	74	75	35	63	35	58	47	71
GTCACGTGAAAAACCA	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TGGAAAGCTTTTATCT	alt_6081_new	47	20	55	50	16	49	18	45	12	41
ATGGCTTATCGATTGC	alt_6081_new	9	6	21	11	7	12	6	7	4	14
CACTTTGGGACCCGTT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
GAACCGTTCGTCAGGA	alt_6081_new	9	5	12	18	7	8	4	14	5	19
TCGCAGGGGTCACACC	alt_6081_new	14	7	23	15	3	17	13	17	11	25
GTGAGTGTTCGCCATA	alt_6081_new	79	50	89	77	62	59	51	62	43	75
CGAGTGCAATTGGTCT	alt_6081_new	6	7	9	5	2	5	4	5	2	4
TCGAGGCGTTTTCAAT	alt_6081_new	100	113	129	101	98	88	90	86	122	91
TGTTAGATATAACCTT	alt_6081_new	0	0	0	0	0	0	0	0	0	0
TATGATTGACGTTCTT	alt_588_fdr	14	8	11	17	6	11	14	9	20	18
TGGGCAGTCTGTTTCT	alt_588_fdr	87	107	63	69	72	48	95	55	93	53
AGGAGACCGCTACTCT	alt_588_fdr	44	74	69	42	51	39	63	33	72	38
ATAGGTTTGCAGGTAT	alt_588_fdr	34	20	29	20	36	26	26	21	31	23
CGACAATTATCGCATA	alt_588_fdr	57	48	63	48	48	55	54	38	57	42
AGCAATCACCGCCGAT	alt_588_fdr	51	50	69	57	70	53	63	42	60	45
TATGATCTGCTCCTCA	alt_588_fdr	12	14	22	14	11	12	11	12	13	9
TCCCTCTCTTCCTTAT	alt_588_fdr	12	13	21	19	12	16	24	16	30	15
TGCAATCTTAGATTGT	alt_588_fdr	2	4	0	1	1	8	6	2	1	2
GGCGGGTACGCTCCGG	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
CACTCTGCCGCTGCAC	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
CGTGCGCCCATGTGAG	alt_588_fdr	19	10	25	9	19	17	15	16	11	21
AGAAGCTGGCGGTCCT	alt_588_fdr	27	22	38	19	25	27	24	26	14	31
TTAGGGGCAAGTTTGT	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCGATAGTCCCGT	alt_588_fdr	77	62	78	69	83	68	80	78	94	72
AAGGTGCCAAGATGTG	alt_588_fdr	47	62	68	57	53	53	53	53	49	32
CCTCAAGGTTTTTTCG	alt_588_fdr	39	42	58	48	47	37	46	31	55	41
TGATTTGACGGTCTCT	alt_588_fdr	0	0	1	0	0	2	0	0	0	0
AGTTGACTGCCTCACG	alt_588_fdr	16	26	29	25	15	24	27	15	18	12
ATGGTTCAGAGTCAAG	alt_588_fdr	18	23	32	26	24	20	33	21	22	20
TTGGTATACCTCCCAA	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
GCAACGTCACTGGCGC	alt_588_fdr	63	97	122	81	90	80	68	73	95	82
TCATCTTGGGCTTTTA	alt_588_fdr	337	307	386	311	348	292	330	290	361	262
GACGCCCGCGAATCTC	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAATCACATTTCC	alt_588_fdr	103	98	113	105	102	83	125	95	126	109
GCCGTACCCTTGTATT	alt_588_fdr	13	38	19	19	27	22	34	22	31	15
AGCTAGTATCCTATGA	alt_588_fdr	13	14	19	8	7	5	6	5	14	9
TGTATCAGGGTGCAAG	alt_588_fdr	26	45	50	41	21	45	38	31	40	31
GCCGTATGCGGCACCT	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
GCACATTGTGTTGGAA	alt_588_fdr	45	49	60	60	54	50	70	51	65	56
TTTAATTTCGTTAGTT	alt_588_fdr	91	92	124	101	100	110	95	108	130	78
CTATGTTGTCCTGTCT	alt_588_fdr	125	119	142	113	158	125	163	94	138	121
TAATTGGTCTGAAAGA	alt_588_fdr	163	129	189	115	137	134	142	128	152	129
CAGTGCACATAATTTA	alt_588_fdr	7	5	8	1	10	9	5	4	7	4
ACTGCTATTATCGTGA	alt_588_fdr	14	19	16	7	15	13	8	13	17	17
CGCCTTTCTGTGACTC	alt_588_fdr	79	79	55	60	101	47	102	70	73	58
TTAAACGCCGTTCATT	alt_588_fdr	40	36	42	41	42	29	27	35	34	18
ATCCGAGTATTGAGGT	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCCTACTGCATGG	alt_588_fdr	42	52	48	54	50	48	47	33	53	35
ATATTAGGAGCTTAGC	alt_588_fdr	83	95	121	119	77	112	114	80	108	103
CGCGTGTTTACCGCTA	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTTCCTGATGCCT	alt_588_fdr	35	38	30	28	45	37	37	23	34	31
TTTCCATGGTACTTCG	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
GATAAGCCAGTTGCCT	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCAGAAATGTTGG	alt_588_fdr	60	57	100	65	52	67	76	60	70	71
GGGGTGTCTTTTTCTC	alt_588_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCGAATGCAATTT	alt_588_fdr	41	33	48	44	44	34	43	39	43	39
TTTACTTATTTCGACC	alt_588_fdr	2	3	4	3	1	3	4	3	2	5
TACCTGAACGATGCAC	alt_588_fdr	11	69	14	9	47	7	81	8	77	15
TCGGGATGTGTGACTA	ref_4926_reverse	0	6	1	1	4	1	2	1	1	0
TTCTGGTAGTCTGCTA	ref_4926_reverse	13	14	6	9	10	9	16	10	18	4
CTTCATACGTCGGGAT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTAATTAGTAAGG	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTACTTCGTTGCC	ref_4926_reverse	9	10	14	11	17	6	11	11	16	13
TGCACATTGTTTTCCC	ref_4926_reverse	7	13	17	8	14	7	14	8	11	14
GTTAGCTAACAGCCAG	ref_4926_reverse	22	61	50	49	58	36	74	33	84	41
GCTCCTTGGATCGTTT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCATCTCTATCGT	ref_4926_reverse	13	27	22	12	24	15	24	13	17	14
CTCGCAAGGTATTCGG	ref_4926_reverse	9	8	8	5	5	8	14	11	14	11
AACGGTCGGTATGACA	ref_4926_reverse	9	30	7	7	44	12	38	13	48	10
GGCTTCGGACTTACTT	ref_4926_reverse	5	11	6	4	15	6	20	7	14	1
ATGCACACGGATAAAC	ref_4926_reverse	75	112	74	63	140	63	102	60	104	54
GCTTCGTGCGATCGCC	ref_4926_reverse	44	87	69	46	76	61	85	47	70	35
CGTTCGGTCGACCGCC	ref_4926_reverse	14	34	27	26	54	27	35	17	47	26
CATTTGGGCAGTAGCT	ref_4926_reverse	5	9	3	1	12	3	21	2	9	3
AGTAAATGATACTTTT	ref_4926_reverse	20	28	24	14	21	20	26	18	23	9
TACGGTCACAGGCGAA	ref_4926_reverse	15	31	27	17	35	24	20	19	34	14
TTGGTCAACAAAAAGG	ref_4926_reverse	40	69	28	26	43	22	68	30	57	33
TGTGTAAAGTAAAACT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTTAGCCAACATT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGCTACAGTCGTC	ref_4926_reverse	12	16	16	15	15	9	14	6	16	18
TCCTTTCTCTTTGGTT	ref_4926_reverse	32	51	43	27	43	33	43	23	53	24
CTTCAAGGCTTTACGG	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
AGGCAAATTGTTCTGT	ref_4926_reverse	4	11	7	7	15	9	14	9	14	10
AGTAGAAAGTTTTGTG	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
CATATATGTGAACAAA	ref_4926_reverse	30	37	46	27	37	16	41	39	63	29
TAATCCTCCACGGTGG	ref_4926_reverse	22	32	34	15	37	14	26	20	29	14
AGTTCCAGCACCCCGT	ref_4926_reverse	0	0	2	1	1	2	3	0	0	0
TCTGATTACTGCTCGG	ref_4926_reverse	9	28	19	22	42	12	33	16	38	13
TAAAGGCGCGATGAAG	ref_4926_reverse	3	18	9	14	14	14	12	5	16	10
GCCGGGTCTCTCGTTT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAGCCAGAGCAAA	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGTACCCCACTCT	ref_4926_reverse	17	54	34	47	45	29	41	37	46	42
CATCTGTGACCTTGCT	ref_4926_reverse	13	33	27	27	20	29	29	23	21	23
GTTGCGTTTTTTTGGG	ref_4926_reverse	6	12	5	2	5	5	6	6	17	4
CATGGGAGGATATAAA	ref_4926_reverse	17	29	26	25	29	19	28	27	32	16
GCCCTTGCACTGTCCT	ref_4926_reverse	25	27	22	17	48	27	43	24	46	24
TAAGCGTCGTGGTTAT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGCAGTGCTCTGT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
GATCTCGACAGCTATC	ref_4926_reverse	65	86	61	64	85	62	95	46	69	59
CGTTCGTACTAACGTC	ref_4926_reverse	78	144	96	91	148	86	147	84	146	76
ACCTCAACTCGCACAC	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TTTATATTACTTGCAA	ref_4926_reverse	57	125	101	68	128	74	143	66	128	63
GCTTCAAGAGGCCTAC	ref_4926_reverse	25	63	34	21	51	24	46	25	48	26
TGATGCGATGCAATGA	ref_4926_reverse	1	2	2	1	4	0	4	3	1	1
TGTGGCCCCTGCAGCA	ref_4926_reverse	4	9	12	8	12	8	6	5	14	2
ACCACATTGTTTTTCA	ref_4926_reverse	26	41	26	26	46	29	46	21	55	23
CTGTTGGCCTGAACTG	ref_4926_reverse	80	108	80	93	119	69	103	73	114	58
AATAGACACGTCCACC	ref_4926_reverse	30	56	30	33	46	27	49	22	42	21
CAGTTCTTGTACCGGG	ref_4926_reverse	9	8	4	4	17	9	12	6	5	7
TGCCCTTTACAAGCCC	ref_4926_reverse	37	79	60	42	76	42	88	39	88	47
AAATTCCGTTCACCTC	ref_4926_reverse	16	23	21	10	21	15	23	16	19	9
TTCATTTAATTGTGTA	ref_4926_reverse	20	38	24	17	30	13	40	14	38	21
AGCGACCTCGTGTGCT	ref_4926_reverse	13	20	17	9	21	6	11	6	20	4
ATGTTGACCCGAGGCT	ref_4926_reverse	106	116	113	113	124	94	112	95	146	97
ACTTGGAGCCCAGTGT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
GATACAACCTCCCCCT	ref_4926_reverse	4	7	0	6	11	1	6	3	13	2
CATACTGTTGTCAGCT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGGTTGTCCCGTA	ref_4926_reverse	80	149	80	84	147	71	125	86	140	64
GATACAACTCTTTTCA	ref_4926_reverse	6	21	14	10	17	8	22	10	13	6
TGCCGCTCACAGCCTT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TATGGCGGTGATACTT	ref_4926_reverse	44	80	73	49	86	56	91	52	97	48
TTCCTAGTCTTGAGAC	ref_4926_reverse	25	49	33	34	51	22	55	22	64	29
ACTTTCGCGTACACTT	ref_4926_reverse	45	84	29	36	83	41	80	33	73	24
AGCTTTGCAGTCACCG	ref_4926_reverse	46	58	64	48	75	47	77	40	73	33
CGCCCTTAAGCGTTCG	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TACTAGAGGCCTGTAT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
ACACGCAGCGTTGCCA	ref_4926_reverse	7	4	9	4	14	5	17	1	15	1
CATAGGCCTTCACCAT	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCATTACAGTAAC	ref_4926_reverse	23	48	52	38	65	38	52	30	62	25
TCCATACGTGCTTAGA	ref_4926_reverse	11	17	16	17	29	5	19	6	24	12
AACTTGCAAGCCTACC	ref_4926_reverse	0	0	0	0	0	0	0	0	0	0
GGTACACCTACCAATG	ref_4926_reverse	40	68	29	46	61	27	87	28	88	33
AGCATCCTTGACAGTT	ref_4926_reverse	1	0	3	0	1	0	1	2	0	0
GTGGGCTTTTTTGGAG	alt_5336_upstream	3	4	6	2	6	3	2	3	4	4
GCTTCGATGCATTTTC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTTCGTGTTCAAT	alt_5336_upstream	4	4	2	1	4	2	0	1	2	5
CGGCGTGGTGGTTTGT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGTGTTGAGGGT	alt_5336_upstream	35	42	59	41	52	37	43	30	51	31
TCGGGGTCTATCGTGT	alt_5336_upstream	19	23	20	18	16	13	19	16	30	18
CCCGGCAAACTTGAAG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTCCGAAACTGT	alt_5336_upstream	3	1	3	0	0	0	2	1	3	1
GTTCCGATCTATTACC	alt_5336_upstream	38	45	38	38	50	24	72	33	53	27
CTTGATCTGACGCAAC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTCTTTGTGCGT	alt_5336_upstream	45	41	49	39	39	34	43	22	42	24
TGCGAGCGCGCTCGAA	alt_5336_upstream	8	10	8	5	11	4	9	6	12	10
GGTTTGCATTTATACC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGACTTAGGACTA	alt_5336_upstream	152	208	201	148	190	144	187	125	215	138
TGAGTGAATTCGCTGT	alt_5336_upstream	6	15	10	7	6	5	7	7	12	6
TAGACGGCCTGTTTGC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GCTACAGGCAAATCCC	alt_5336_upstream	10	14	11	18	20	11	9	9	15	9
TCTCCGATACGGTTAT	alt_5336_upstream	11	21	8	11	14	5	21	8	21	8
GTAGATAACGCACCCG	alt_5336_upstream	16	7	10	8	5	4	13	5	10	10
AGACATACAAGTTGCG	alt_5336_upstream	14	6	13	13	10	12	8	11	17	9
TTAGTACCCTTTCTGC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GCTAAAGAGCGATAAT	alt_5336_upstream	61	70	77	63	96	52	97	50	96	60
GGCTTACAAGGTCTAG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCCGCGCCGTGT	alt_5336_upstream	41	56	58	51	52	46	55	45	52	34
AGAAAGATCTCATCTC	alt_5336_upstream	8	21	21	11	13	10	17	10	14	7
TGAGCGATTGTTTTTC	alt_5336_upstream	13	13	11	15	14	17	13	13	10	12
CAGGATCCAGCATTCT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGCCCCGGTTCCT	alt_5336_upstream	17	34	22	14	36	25	33	11	35	13
GTTCGTCGACTAAGCT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGTTACGGGACGA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTGCTCCTGCGCT	alt_5336_upstream	58	84	71	69	75	84	80	57	84	68
CTCTGGCTAATATAGA	alt_5336_upstream	8	22	11	16	17	7	23	8	18	8
TCGATACCATTCTTCG	ref_5336_upstream	10	9	6	7	8	8	6	10	9	7
TTAACGCTATCCTAAT	alt_5336_upstream	14	12	8	12	8	5	9	12	20	15
CGCTTCACAGATCCCT	alt_5336_upstream	26	45	62	50	44	44	54	24	42	41
CAAGTGACTCTTGCAA	alt_5336_upstream	6	5	1	4	14	0	14	11	5	1
CTTGAAGATTCGTATC	alt_5336_upstream	13	18	19	16	19	12	20	6	19	9
TTATCTATCTGAGTAT	alt_5336_upstream	30	34	25	33	29	21	29	18	33	21
GAGGCTGCATAACAAT	alt_5336_upstream	2	14	3	3	7	12	7	4	6	7
TATATTCTTTCTCGAT	alt_5336_upstream	31	25	32	41	31	29	24	46	26	46
AACCCCCGCTTAGGTC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCTCCAATGTCCG	alt_5336_upstream	95	70	85	66	91	56	68	82	79	57
CGCGACGCTTATGTCG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCCTTTAGGTCCA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GCATGGCTGAAGAACG	alt_5336_upstream	16	25	29	20	24	26	26	21	24	9
ATCTCTCAGTTCGCAT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTTGAGGGTTGG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGACTTAGGACTA	alt_5336_upstream	0	0	0	0	1	0	0	0	0	0
TACGCTAGGGTCAGGT	alt_5336_upstream	17	23	30	19	27	21	16	25	21	16
CTTTGCACTTCTATAA	alt_5336_upstream	10	6	8	9	14	7	11	11	10	3
TTTATTGTTCTCGCCG	alt_5336_upstream	77	98	82	70	86	75	96	78	77	63
TGTTTGGGACAGCATA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GGACAATTTTAAAGTT	alt_5336_upstream	17	22	20	16	17	23	16	17	21	13
CGTTGGCAATCCCTTG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTACAGGGGTGT	alt_5336_upstream	13	23	21	19	21	18	15	19	8	16
TCAGTACTGGACATTA	ref_5336_upstream	16	11	21	24	16	12	18	13	22	12
GTAGGGTGATGCGTCA	alt_5336_upstream	17	27	30	20	35	23	28	19	20	31
ATCCGCGCACAACTCT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GTGCAGGGTCCCGACG	alt_5336_upstream	11	21	19	15	22	14	24	14	18	19
CATCCTCTTCCCAAAG	alt_5336_upstream	67	77	86	64	68	64	58	75	83	65
AGTAAATTGTAAATGC	alt_5336_upstream	28	21	31	19	17	16	30	16	24	18
CATCAGCCGCTGTATT	alt_5336_upstream	8	8	7	9	11	3	8	8	6	1
CGTATAATTTCCATGC	alt_5336_upstream	24	39	28	24	42	17	59	25	42	20
TTCGCGTTCTAGAACA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
CATCCGTCACGGCGCG	alt_5336_upstream	34	58	51	53	64	60	43	56	54	42
CACTGGAATTAGGGAA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GTATTCTCCCGGTCTA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCCGAGAGTCAGG	alt_5336_upstream	37	29	54	20	48	33	47	42	63	36
TTTGGTCTTGTCCTTT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GATAACGGCAGCAAAT	alt_5336_upstream	58	47	75	49	67	59	48	48	52	59
TGGGTCACCGGAATAT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGATGTTTTGTTG	alt_5336_upstream	56	93	79	64	79	65	100	50	98	79
GAGCGAACGTCTAATG	alt_5336_upstream	3	0	3	3	2	1	4	2	4	1
CGGGTTATGGCTTTTG	alt_5336_upstream	63	55	69	37	60	51	59	33	43	55
CGTAGTCTCGGCGTAC	alt_5336_upstream	207	266	224	198	267	196	262	175	285	176
TAATGCGCGGTTTTGA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTAATACGATGGG	alt_5336_upstream	121	146	133	132	166	105	135	89	183	92
GCCTTAGTGTAAGCGG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
ACCTATCCGAACGGGC	alt_5336_upstream	12	15	9	6	12	8	20	7	5	4
CAAAATTATTCTCCCA	alt_5336_upstream	26	19	51	20	29	35	36	23	44	21
TGTAGTGTTCTCAGCT	alt_5336_upstream	0	2	2	1	1	0	0	0	1	0
TATTTGGCCGCACCCT	alt_5336_upstream	1	3	4	3	1	6	2	3	6	6
GTATTCTCACCTTTCG	alt_5336_upstream	12	28	13	17	29	12	32	13	24	13
TACGGGTCCATTCAGG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
CTTCACAGCTCTACGT	alt_5336_upstream	8	14	9	6	21	12	9	6	11	9
AAAATCGCACCAGATC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGATTGGAGAACC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
AAATTCTGCGTAGTTT	alt_5336_upstream	52	56	65	55	62	38	51	52	69	30
GTCGAAACGATGCACC	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCCGGGAGGCGAG	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGTGTCTGTAGTT	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGTGTGATCTAGT	alt_5336_upstream	69	94	88	71	78	70	83	71	98	68
AGTTCTAGGCCCCGGA	alt_5336_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGGGCCGATTGTC	ref_1893_negative	41	75	53	42	79	39	100	34	78	33
CCTATCGCTTGCTTGG	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
AGGTCCCCTCATCGCA	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
TTTAGCTTAAAGTCTT	ref_1893_negative	13	15	15	8	11	14	17	7	18	14
ATACCCTATACATTCG	alt_1893_negative	95	131	121	87	163	88	142	80	152	97
CTCGATCCAGTCTACT	ref_1893_negative	27	23	18	15	10	7	34	16	18	11
TAACCGCAAGAGCGTT	ref_1893_negative	36	51	36	25	64	29	61	26	57	25
CCTCATGACCAGGGGC	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
AGAGTATGATTGTGCA	ref_1893_negative	64	125	80	52	126	66	126	59	122	55
TTTTTCGCGGGGCTCT	ref_1893_negative	45	64	67	48	72	49	81	33	74	44
GTTCCCATTTCTTCCG	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
CACTGAAGGTAACGGA	ref_1893_negative	43	66	33	33	50	36	67	22	55	30
GCTCACTCTCTGCCTA	ref_1893_negative	0	0	0	0	0	0	0	0	0	1
TTTGCATTGTTACAAA	ref_1893_negative	166	288	193	181	287	145	345	135	319	139
TTCAACCAAATACTCT	ref_1893_negative	5	11	4	5	10	3	12	3	15	5
GTACGGATTTGTTGTA	ref_1893_negative	20	20	16	12	33	18	20	13	29	15
TTGTTGTTACAATTGA	ref_1893_negative	70	107	65	66	111	63	100	74	120	59
CGCTCCCGGCCATGGG	ref_1893_negative	58	120	72	59	89	69	126	60	125	54
CACGTTAAGTCTCCTT	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
GCCGCATACGTTACCA	ref_1893_negative	49	110	53	51	92	61	121	47	109	37
CACATATGGTACAGCC	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
TGTGAAAGTCGAATGG	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
GTCCTGTTGTCCGACC	ref_1893_negative	13	23	19	14	14	14	39	9	20	8
TATCTTGTCGGATTAC	ref_1893_negative	3	11	7	3	10	5	6	8	18	3
TTTGTTACACGGTTAG	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
CATGGCCCGGAGTTTT	ref_1893_negative	11	25	23	14	23	21	27	5	16	15
TCTGGAGATGTGGCCC	ref_1893_negative	7	16	7	4	12	7	17	4	12	3
GAATTTTGAGGGGTGC	ref_1893_negative	4	8	3	4	14	8	14	1	6	4
CTGATAGTAGTAAATA	ref_1893_negative	66	125	85	67	100	81	137	87	141	81
TCCTCCAGGTTCACCA	ref_1893_negative	1	11	1	3	2	3	5	6	10	3
TCGCGCCATTCCCTAA	ref_1893_negative	11	21	13	15	31	5	28	19	18	13
CTGCAGATCGCCCTTT	ref_1893_negative	31	65	49	34	53	38	33	27	64	32
AGTAATGCTAATTGGG	ref_1893_negative	51	73	65	62	89	46	99	37	77	44
CTCTTAAGATTTTGTA	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
TAACTTGATCTCTGGG	ref_1893_negative	3	7	6	1	3	5	5	2	3	3
AGTCGGTAGTCCTTGC	ref_1893_negative	11	30	14	12	43	14	32	14	33	16
TCTCCCACGGGAGATA	ref_1893_negative	8	8	4	6	13	4	9	4	12	12
TGTCAGGTAGGTTTCA	ref_1893_negative	39	62	49	31	84	39	71	44	78	32
CGGAGAATCCCGGGTA	ref_1893_negative	60	94	61	73	98	73	82	65	96	67
AATGCCCTTAACACGG	ref_1893_negative	68	127	98	87	98	71	136	67	132	72
CTTTTTCAACAAAAGC	ref_1893_negative	23	35	22	16	44	19	44	17	38	21
TGCATGCATTAGGAAA	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
GGTCAGACTGGCATTG	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
TCTCGCACCGTCCACG	ref_1893_negative	46	105	69	45	81	44	87	42	98	49
GAACGTATTCCTGCTT	ref_1893_negative	75	105	76	78	118	71	124	64	115	75
TTCACTTTATATGATA	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
CAATTTTACCGAATAT	ref_1893_negative	18	29	16	21	19	15	28	14	32	15
CGGCGATCTCCCTTGT	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
TAATTTATTCACCTTT	ref_1893_negative	11	17	5	5	9	12	14	9	11	6
CGATACAATTGTTTAC	ref_1893_negative	21	27	29	21	37	11	29	16	36	11
CCGCTTCAGTGTCGCT	ref_1893_negative	4	5	2	6	12	2	8	2	7	3
CTTTTGTATTTTAACT	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
TCGAACCAGGTCATTC	ref_1893_negative	20	27	13	10	35	21	40	17	41	21
TTTTAGTCAAGACTCG	ref_1893_negative	16	29	9	8	13	10	28	8	14	14
TCGCTTGGCTATGCTT	ref_1893_negative	17	32	30	24	31	9	42	15	30	14
ATTAGGCCCTGATTTC	ref_1893_negative	82	98	67	68	66	57	93	44	92	58
TATTTTTTATTAGTTG	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
TGTAAGGGTCCACTAC	ref_1893_negative	55	67	54	46	61	40	82	39	72	40
TCCTCGCGCGCAAATT	alt_1893_negative	15	25	8	9	17	8	13	8	11	3
AGTTTGGATAGGGCTC	ref_1893_negative	0	0	0	0	0	0	0	0	0	0
CGGAGCTGTCGAGCCT	ref_1893_negative	17	27	19	15	37	22	28	11	14	5
GCTGATAGCCACGATT	ref_1893_negative	23	31	24	27	40	16	30	22	34	17
CCTATCGCTTGCTTCG	ref_1893_negative	5	25	10	14	22	9	24	10	22	29
GTTTTTCCAACCTTTT	ref_1893_negative	23	31	24	14	33	18	28	18	42	20
GGATATAACATAGCTA	ref_1893_negative	6	22	9	5	14	14	15	18	14	6
GATTTTCTGGTACATG	ref_1893_negative	22	46	24	30	43	26	34	35	55	20
TCCAGCGTACTGCTTG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CGGAATGGGTCTGAGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GTCCCAACATACTGGA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTCACACCTCCA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GTGGCTTGGGGATTCT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCGAGGTGTCGTGTGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ATTACCGAGCCGGTTA	alt_481_missing	1	0	0	0	0	0	0	0	3	0
ATCAACGGCCGATGTG	alt_481_missing	0	2	1	0	2	1	5	1	5	2
TGCTATAAGTCCGATG	alt_481_missing	2	3	3	0	2	1	1	0	3	1
AGCTGCGGATATGTTA	alt_481_missing	1	0	0	0	1	1	0	0	1	0
CTCGGAACATGCGTTC	alt_481_missing	3	7	4	5	2	1	3	5	3	2
TTCTTCTGGGTCGACC	alt_481_missing	5	0	3	1	1	0	5	3	4	3
ACCCTACGAGCGTTAT	alt_481_missing	5	0	3	3	10	4	10	4	6	1
TACCGGTTAGCCAAAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
AAGATACAGCCACGAC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ATCATTTTCCACGGCA	alt_481_missing	3	4	0	2	2	1	1	1	2	1
ATCGGTCGTCGTGTTA	alt_481_missing	1	1	1	1	4	4	3	1	2	0
CATTCTATGTGACAGG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTTAATGCCGGTCAAC	alt_481_missing	3	1	2	0	3	0	3	1	1	2
ATGTCACGCCTTAGAG	alt_481_missing	1	0	0	3	1	1	2	0	0	1
GTGTAGAAGCTATAAT	alt_481_missing	19	26	36	20	28	22	42	24	27	19
GAGGGACGTTTCTCGC	alt_481_missing	3	0	3	0	3	0	2	0	1	1
TGACTGTCAGTTTTGG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGGCTTATACCC	alt_481_missing	2	1	1	0	0	2	1	0	3	0
GACGGGCGGTCAGAAG	alt_481_missing	2	1	1	0	1	1	1	0	1	0
AGGTAGTAGTTATTGC	alt_481_missing	14	7	14	14	17	8	21	17	12	10
TCGTACCTCCTCCTGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGTAACTGTCGGCCGG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCCGCGGTTTACTCAG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CGCAGTACCGTTCAAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGTCCTGTCTTTATGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ACCATGTTTTATCGTA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CTGCTTGCGCGATGGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCCTTTACCCAATATA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGGCGTTTCATAGCCA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCTGTATGCCTTTGGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TATGATTCCGGCGATT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GAGCGTTATTTTTCCG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CGTCATCTGGACACGG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ATGTTCTCCGCCCTTT	alt_481_missing	5	5	9	7	7	10	8	4	5	8
TATTAGTACCACCAGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GCTCCCTCCTCCTCAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
AAGTGAGGCAGGCAGC	alt_481_missing	1	1	1	1	0	5	0	0	1	3
CTCATCTTCAGAACTC	alt_481_missing	0	3	0	1	3	1	0	6	4	3
GCTGCGCCGACTTTCA	alt_481_missing	3	2	5	2	4	1	5	5	8	4
GCATCTTAGTCCGTAC	alt_481_missing	1	5	3	0	7	1	6	2	2	4
CCAGGTCTGGACCAGC	alt_481_missing	3	2	0	0	3	1	0	2	4	1
GGGTTGTCACTGCCAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GCTTGTCAGCTAAGGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTAGCCTCTTTACCCT	alt_481_missing	0	2	0	0	0	2	0	0	1	0
AGTTCGAGTGCTTGCA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CTAGCCGTTGTCACAC	alt_481_missing	2	2	3	2	1	3	2	0	3	0
TAACCCTGATAGGGTA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCCGTTTGTAATTTGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CGTATTTCATAGGACG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CCTCCAATCCTAGCAC	alt_481_missing	1	1	0	0	1	0	1	0	1	0
GCGCAGATAGCGTCCT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TGGACGCATTTGCATT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTACATTCCGGAATGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TGGGATAATTTGCTTG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGCAGCCCGGTAAAGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TATAATACCTCTTTTT	alt_481_missing	5	6	4	5	5	6	3	4	10	7
CTCATGACAGCTTAGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CACCTCCATCTTCCGG	alt_481_missing	2	2	3	5	9	2	6	6	7	5
TTAGCCTATCTGTTTT	alt_481_missing	0	1	2	0	1	3	0	2	3	4
GGTCGAGTATTAATGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCAGTGTTGACCACAC	alt_481_missing	6	6	3	0	2	0	6	4	2	3
CTCTTTCTATCGGTGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GTTGATGATGCGTCTG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
AATCGCGGTATCGACA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTGTGTCCTATG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CATGCTACGTGTACCC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCTTGGATATGCTTCC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCGTAAAGAGCTTCGG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CGATTTTTATTATATT	alt_481_missing	16	20	19	12	17	21	22	11	15	17
CTTAGCGTATTTTATC	alt_481_missing	9	16	20	8	13	15	12	16	15	14
TACGCCTCAATCCGTT	alt_481_missing	0	0	0	0	4	1	3	1	1	0
ACACGTGCTGTGTGCT	alt_481_missing	2	8	0	0	9	2	4	2	8	1
CGTATACCATGATGCC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CATACTGTACTACCTC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
AAGCTCAGTTCGTAAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TGCGATTCCTGAAATG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ATTGAAACTGACGGCA	alt_481_missing	2	2	1	0	1	2	1	1	0	0
GTCCGCCCGTAAAATG	alt_481_missing	0	0	1	0	0	0	0	0	0	0
CTTATCTACCTTAGTG	alt_481_missing	1	0	0	0	0	0	0	0	0	0
TCGTTATTCGCGCCGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
AGTGCCAGTCACGTTA	alt_481_missing	3	2	8	5	4	6	2	2	2	3
TTGAATGCCTGATCCT	alt_481_missing	4	5	3	8	3	2	7	3	1	5
CGACCACAGTCGAACC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TAATATAATTACTCAT	alt_481_missing	6	4	4	6	3	8	12	8	12	6
GCACCTCTCTCTGTGT	alt_481_missing	1	1	1	4	0	0	0	0	0	2
GCGACCGTCAAAACCA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CTTGGAGCTGCGGGGG	alt_481_missing	3	2	6	4	3	6	4	3	2	1
GCCCCTATACGCCCAA	alt_481_missing	0	1	0	1	0	0	1	1	2	0
ATCGTGTGTCTTTATT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TAGACATGTTCACTGG	alt_481_missing	2	9	6	7	6	4	12	11	5	0
TTTCACTCGCCATAAT	alt_481_missing	2	2	0	0	1	0	0	1	0	0
TGCTTTACTCGATCTG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ACTTTAGTATATTACA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TCAAGATTCACCAGGT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTGGCACGGTCCTCTC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CATTCCAATCCATTCG	alt_481_missing	15	6	6	6	5	11	18	9	8	5
TATAATATGGCACGCT	alt_481_missing	9	11	8	8	13	7	6	5	12	4
GTAAATCATTTAAACT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGGGAATCTGCAACTC	alt_481_missing	2	0	1	1	1	1	5	0	1	1
CGCGGCGACTACATTC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CGATATTTCTTCGTTA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CCTATCATTGCAATTT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GATCAATATACACGGA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTATTCATCCGT	alt_481_missing	6	8	1	6	4	4	6	3	4	2
CATTAGAGACCTTACC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGTCTATTAGGTCGCC	alt_481_missing	9	6	8	11	10	3	7	5	11	5
GTTTCTGTGCGTCGTG	alt_481_missing	0	1	2	6	2	2	9	1	4	3
TTCCTCTGTGTCGGCA	alt_481_missing	1	6	2	0	2	0	1	1	0	3
CATACATACTTACCTG	alt_481_missing	0	6	0	1	4	0	3	0	9	1
CACGATGGATATAGCT	alt_481_missing	2	2	7	2	9	0	6	3	1	1
AACAATTACTCAACAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ACAACCAGCAAGACAC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CCGTTGCCTTTCATCT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTGCATCAATTCGTCG	alt_481_missing	2	5	2	3	3	1	8	2	2	1
TCGCCAAGCTAAGTCA	alt_481_missing	0	0	0	0	2	1	1	1	1	2
CATTCTTTGATCTTGG	alt_481_missing	0	0	1	0	1	0	1	0	0	0
AGCGGGGTTGGGTTTG	alt_481_missing	16	14	10	11	9	3	19	5	12	9
CTAGCTACCAACTGGT	alt_481_missing	0	0	1	3	2	0	4	1	3	0
CAAGTAACGCCTTGTA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CTGCCAGTGGGTTCTA	alt_481_missing	2	3	5	4	3	1	2	5	9	3
TTACACGGGGACGATA	alt_481_missing	0	0	0	0	0	0	1	1	0	0
GGTTTCGTTTTGTGAT	alt_481_missing	12	13	6	7	12	14	11	10	21	9
TGATGCTCGCCGTTGA	alt_481_missing	1	2	1	0	1	1	0	1	0	0
TGACTATGTTCTTCGA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CACATGCAGAGTCGCC	alt_481_missing	1	2	3	1	3	1	2	2	3	1
GTTGTCCTTGCATATC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
CCTGTAGGTCTCTGGC	alt_481_missing	3	0	5	3	5	3	0	2	2	2
CTACCCGTCTTTAGGG	alt_481_missing	0	1	0	0	0	0	1	0	0	0
TTGCGAGAATTGACCG	alt_481_missing	0	0	1	0	2	0	1	1	0	0
GACCCGATAGTACACA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTTGAACTAACTCGGA	alt_481_missing	0	0	0	1	0	1	0	0	2	0
ATATATTGTACGGAGT	alt_481_missing	14	13	8	12	12	15	15	12	17	6
AACGGTATGGGTTAAT	alt_481_missing	5	5	6	9	0	5	3	5	5	6
ATCGGTAATGTAATGG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ATTGATCGACCTCCAA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GGTGCTTGGATGTACG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GACTCGACCAGGCCGC	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ACCTGCGGCATTTTTA	alt_481_missing	3	5	1	1	2	3	2	4	2	1
TCAATATAGATCGTAT	alt_481_missing	0	3	12	7	8	5	8	3	6	7
CCTGCTGTCTGTGAAC	alt_481_missing	2	2	2	3	10	4	1	2	3	5
AAGGAGCCGTATTCTC	alt_481_missing	3	4	2	3	1	3	6	2	4	4
GAATTGCCTCCTCAAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
GTTTTTAAGGGTTTAG	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TATATTAGGGGTCCCT	alt_481_missing	0	1	1	0	1	2	4	1	1	1
GGCTTCAACTTTCCCT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TGGGGGCATTCGTGCA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
AGGACTTGCGGCCCCG	alt_481_missing	4	3	3	1	6	1	6	4	1	4
ATGACTACCAGACAAT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TAGCTTGATAAGTCGA	alt_481_missing	0	0	0	0	0	0	0	0	0	0
ATTAGTTCGTGCGACC	alt_481_missing	0	1	3	0	2	2	2	1	2	2
ATCATTGTTTGTCATT	alt_481_missing	0	0	0	0	0	0	0	0	0	0
TTAGGCTGCTGAGACA	alt_481_missing	3	4	5	4	6	5	5	2	7	1
GATGAGCACGAACCTT	alt_481_missing	1	0	0	0	2	0	3	2	2	5
AGGTTGCGTACGTATT	alt_481_missing	0	0	0	3	0	0	1	0	1	1
TGTTGCTGCGGAGACT	alt_481_missing	1	0	0	1	2	0	6	0	1	4
AGGCCCTTACTAGGCT	ref_829_reverse	24	19	25	23	23	16	21	11	27	26
AGTACCATCGTTAAGG	ref_829_reverse	8	22	31	24	28	12	19	20	26	13
TCTGAATGTGGCTCCT	ref_829_reverse	35	27	40	32	29	46	46	37	43	33
TTGTCCTTCGTTGGCT	ref_829_reverse	34	34	43	42	53	34	36	41	42	48
CGCACACGTAAACTTC	ref_829_reverse	63	51	90	74	87	51	74	76	76	59
CAAGCACGAAGTTGGA	ref_829_reverse	33	29	36	39	30	30	37	35	37	25
TCATTTTACAGCCGTG	ref_829_reverse	40	27	37	35	30	35	48	33	43	30
CTGCGCACTTGGCGCG	ref_829_reverse	199	210	248	243	216	213	236	164	237	172
TTAGTCAAGTGCTCCA	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCGGAAGCGCAA	ref_829_reverse	107	100	122	106	117	85	103	100	105	121
CGCGACATCGCATTTG	ref_829_reverse	4	9	9	14	6	9	11	10	6	5
GTATTTATATACCAAC	ref_829_reverse	52	60	62	54	60	60	48	42	64	45
TTTCAAACCGTCTCAT	ref_829_reverse	16	12	14	17	18	15	20	8	25	10
CGGCAGGCCTATGATG	ref_829_reverse	20	23	27	19	26	16	30	19	21	17
GCTTCCGGTATAAGGT	ref_829_reverse	72	69	135	89	68	66	94	74	80	78
CTCCGCTGTGTATTTA	ref_829_reverse	87	104	97	82	108	82	101	101	100	89
AAACTTCGTGTGACGG	ref_829_reverse	26	18	24	12	16	25	17	26	31	21
GTCCTGGTCCTGGTAT	ref_829_reverse	18	17	21	14	17	15	21	10	18	11
GATTCCAGTACCGCGT	ref_829_reverse	55	70	81	78	47	61	72	58	61	63
AATGAGGCTCTGGGCT	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGGTTCACGAGAC	ref_829_reverse	29	25	48	35	39	23	33	27	37	16
CGTTCGCGTCAGGCCG	ref_829_reverse	43	38	50	43	36	50	30	41	44	35
CAACGGTTTCCCTAGT	ref_829_reverse	66	65	65	45	79	70	52	60	63	57
TCTCATCTAGACTTCT	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTCAATGCGTCCG	ref_829_reverse	28	22	30	34	34	34	40	22	41	18
TCACTTGTGCACATCC	ref_829_reverse	21	35	38	21	19	26	21	25	28	19
TTACTTTGTAGGTTCT	ref_829_reverse	13	18	19	8	7	10	7	6	10	6
TTTATACTTGGTGCCC	ref_829_reverse	56	40	52	50	44	43	47	36	47	41
AGGGTGCAATCGGTCA	ref_829_reverse	32	39	40	27	29	34	25	45	33	50
AGCTCGAGCTATTTCT	ref_829_reverse	13	10	27	11	14	19	22	25	16	15
ATTACTGCGTCTAATT	ref_829_reverse	81	59	101	86	75	109	84	75	69	76
CCATGTGTTGTTTCGC	ref_829_reverse	54	55	71	66	53	57	63	73	77	58
TTACAGAGCTTGTAAC	ref_829_reverse	34	36	38	35	32	30	21	33	36	30
ATGTCCGGGAGGTGGG	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
TAACCAGCCTACCTAG	ref_829_reverse	5	9	12	8	9	7	7	13	10	12
CTTTCAGTTTTCTGTA	ref_829_reverse	11	12	15	14	25	3	14	11	9	13
CATTCATCTCCTGGGT	ref_829_reverse	10	10	26	14	13	15	15	16	16	15
TACAAGTGATTCTCTT	ref_829_reverse	10	15	14	15	9	11	5	17	6	13
CCAGTTGCGCCGTATC	ref_829_reverse	120	121	162	155	122	153	174	141	167	129
CTCATCAAAGTTCAAA	ref_829_reverse	80	118	113	89	150	96	106	83	100	99
TGTAACGTGTTCTGGG	ref_829_reverse	10	14	27	25	22	18	26	16	16	22
TTCTACCGAATACAAG	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTGCATCCGGAGG	ref_829_reverse	50	55	61	32	52	39	44	33	39	58
TAGGGCATTAACCTCG	ref_829_reverse	30	25	34	31	35	30	20	18	22	21
TGGTCCAGGATTATTC	ref_829_reverse	0	0	1	0	0	1	1	0	1	0
AGTAAATTTAGCTACA	ref_829_reverse	60	43	48	45	49	40	59	39	46	50
GCCTTTCGAGTTGCGT	ref_829_reverse	60	74	101	55	78	78	77	51	76	59
GGGGCTAGGGAGTGCT	ref_829_reverse	27	20	24	24	27	18	23	18	24	27
TTTTTTGTCCAGGATT	ref_829_reverse	4	2	1	2	5	2	2	6	1	1
GAAGCGTGCACTTAAT	ref_829_reverse	15	22	18	29	24	15	14	3	18	14
CAGTATCCATTTTCCC	ref_829_reverse	41	23	31	39	37	37	32	31	40	42
CAGTGTGCATTGTAGA	ref_829_reverse	13	5	17	13	11	11	14	6	15	9
TTGAATCCATTGTGTC	ref_829_reverse	26	19	31	15	21	28	21	19	25	22
TTGCAGCGCACCAATC	alt_829_reverse	9	14	10	13	10	13	12	13	14	11
ACGTGTTGGACATGAT	ref_829_reverse	44	40	80	59	47	43	69	61	39	38
CCCTCCATCCGCGGAT	ref_829_reverse	7	26	10	8	23	13	29	13	26	9
AATTGTGGGGCGAATT	alt_829_reverse	93	71	93	98	78	98	88	89	74	76
TGTACCGTTATATGGT	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTCAGACTCTATA	ref_829_reverse	35	40	45	47	49	52	31	37	34	22
CCAGTGGCCTGTATCT	ref_829_reverse	26	10	36	27	30	18	36	22	24	26
AGCGTTGACTCCACAG	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGGTAATAACCCT	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
AGCAGATGGGCGTGTT	ref_829_reverse	7	10	6	4	8	11	6	7	5	4
CGGTCTCATGCATACA	ref_829_reverse	13	21	24	14	21	24	23	17	21	9
TTCGGATTCAAGATCG	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTGTTCTTTATC	ref_829_reverse	35	23	35	42	36	25	30	26	27	28
AGTCCGTACTTCCCGC	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
CGTGAGGCACATTACT	ref_829_reverse	33	22	48	36	30	44	33	40	32	35
CTTTCTTGACGAACTT	ref_829_reverse	152	133	172	162	145	112	148	118	127	105
TCGCGGGCTCCCTCCT	ref_829_reverse	11	13	8	9	11	6	18	14	10	10
TGATTGCTTGCACTGA	ref_829_reverse	25	33	37	36	31	20	39	26	28	37
TAGTCGCCGTACTTCA	ref_829_reverse	64	57	83	65	57	47	60	47	61	56
TTTACTTGCGACATTT	ref_829_reverse	55	54	91	46	23	38	48	46	44	52
AACAGCTTTCGGGTCC	ref_829_reverse	45	66	67	54	70	46	58	53	70	38
CAAGGCGAGTTCCGGG	ref_829_reverse	33	15	16	11	11	23	16	16	19	11
GCGTATGTTCCCCATA	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
AACTGTATTTCAACCT	ref_829_reverse	43	39	31	34	33	35	31	32	44	25
CATCACAACCATACCC	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGTCAATGTTGAA	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGCTATTAGATCC	alt_829_reverse	25	28	41	35	18	35	21	25	32	26
ATGCGGTAACTCGTCG	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGGTACTGTTAT	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
CGACGCCAATTTGTCG	ref_829_reverse	7	6	10	7	9	7	4	4	16	11
GTTTACGCAGTCAACA	ref_829_reverse	1	3	1	1	3	3	2	2	0	0
TTCACTATCGCGACAC	ref_829_reverse	47	46	51	36	30	29	40	28	27	37
ACATTCCCTCTCTATC	ref_829_reverse	42	61	61	58	56	39	51	43	62	43
CCGCCTGAGTTAACGA	ref_829_reverse	64	74	85	71	90	47	95	59	85	89
ATGTCGGATTTAGTCC	ref_829_reverse	33	35	31	26	35	31	51	42	30	53
GCTCCACTCGGTGAAT	ref_829_reverse	7	12	2	8	7	11	9	4	7	1
TGAACTTCCGGCTTCC	ref_829_reverse	20	18	18	19	19	18	21	21	20	13
GATGGGTCCATTAAGC	ref_829_reverse	1	2	4	6	2	8	3	2	2	4
ACCTACATCAGATCTG	ref_829_reverse	47	43	51	52	35	21	44	25	40	41
AAATAATATCATATAT	ref_829_reverse	113	95	121	137	85	96	100	105	97	99
TTTGTTGCTCTTTTAA	ref_829_reverse	27	24	16	16	16	19	21	24	9	20
GTCTTGATTTGGAATC	ref_829_reverse	23	8	16	13	16	30	29	14	19	19
ATGTGCGTTTAGTTAG	ref_829_reverse	14	1	10	10	7	9	5	6	10	4
ACGCACATTGGTACTA	ref_829_reverse	3	9	10	10	9	9	3	3	6	7
TTTAATCGCCCTCTGA	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
CATTTCGTTGGACATT	ref_829_reverse	61	56	64	64	59	48	84	66	52	57
TCATCATGCAGTCTAG	ref_829_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTGCCAATCGCG	ref_829_reverse	94	79	134	122	103	98	68	103	89	82
TGGTGTGTCTCACAAG	ref_829_reverse	2	5	1	4	1	2	6	2	5	2
CCACTTCCCCTACATG	ref_5199_upstream	8	60	7	7	52	6	48	3	60	4
GTAATCTAATCTCAAG	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
CATCCTCATTTTGGCG	ref_5199_upstream	131	185	184	119	200	139	165	132	184	125
GTTTGGCCGCCGTCGT	ref_5199_upstream	30	64	46	35	64	42	47	38	74	26
CTTCTGAATTGCTTTA	ref_5199_upstream	0	1	2	0	2	2	2	3	1	3
GACACACTCAATCAGC	ref_5199_upstream	29	17	24	14	41	24	40	18	43	24
GGTTATGCACAAAGTC	alt_5199_upstream	57	76	61	48	71	51	92	46	94	40
AGCTTTGAGTAATGCG	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGCCTGATGGAC	ref_5199_upstream	21	20	15	16	26	6	21	11	33	11
ATGTGGATAATGCCAT	ref_5199_upstream	10	11	8	8	8	10	11	5	10	4
TCGTCGAGTTGCAATT	ref_5199_upstream	103	138	147	134	133	111	171	110	138	114
TATCCAATGATTCTGT	ref_5199_upstream	30	66	45	28	52	35	72	25	49	33
TATGAAAGTTTCTCTT	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTCCCAGTATCTT	ref_5199_upstream	19	28	45	17	32	35	43	19	28	19
ACCCTGCACCTTCGGC	ref_5199_upstream	14	18	16	11	18	15	22	9	14	11
TCTCTCCCCTGGGGTC	ref_5199_upstream	6	61	16	5	53	10	76	7	64	9
TCATATTAGACGGCTC	ref_5199_upstream	6	11	11	15	11	11	13	12	14	13
CTTTCAGTGGGTAGGC	ref_5199_upstream	102	108	107	111	138	104	129	95	115	65
TCAGTGAACTGGCTTT	ref_5199_upstream	17	16	23	16	20	11	31	21	21	18
TACTCCGGATTGTATT	ref_5199_upstream	33	64	50	30	43	43	73	37	67	38
ATGTCCGGTCCGGGGA	ref_5199_upstream	30	15	31	46	30	20	34	29	40	21
ATAGTACCTTGGAGGA	ref_5199_upstream	31	42	36	29	36	20	51	27	45	34
GAGGTTATAACTGTGT	ref_5199_upstream	15	30	15	15	20	14	15	16	10	13
TGGGCTTTGTTGACGC	ref_5199_upstream	10	16	18	20	18	10	16	10	18	11
TGTTAAGGGTCTCGCA	ref_5199_upstream	9	23	21	19	21	13	10	14	19	11
TCAAGTCGTTTGTAGG	ref_5199_upstream	3	4	4	8	5	3	7	7	5	2
ATTATTCTTAAAGCTG	ref_5199_upstream	12	23	28	21	26	24	32	10	27	15
CATAGGTTCTTTCTAT	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
TATAAGTCCACCCCCT	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGTTTTTGTATAG	ref_5199_upstream	9	4	4	0	4	2	7	6	5	2
CTTGCTTGTTCGGACC	ref_5199_upstream	13	23	18	19	26	16	21	27	41	18
TTAACGATTGTTATGC	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
CAGGATCTACGGAGCG	ref_5199_upstream	1	7	3	3	7	2	6	6	9	6
ACTATGTTCATCCCAT	ref_5199_upstream	9	19	23	23	31	21	27	22	28	11
TCGGTCTACCCGCGCA	ref_5199_upstream	16	24	13	21	14	15	19	22	21	11
TAATTAGCCCGTTCCG	ref_5199_upstream	2	7	3	4	11	3	5	4	8	4
AGCTTTTATGTTTAAA	ref_5199_upstream	15	24	20	20	28	16	24	23	20	13
GCTTACTACGGACGGT	ref_5199_upstream	2	9	5	5	10	8	10	7	15	3
TGAATTCTATTGTCGC	ref_5199_upstream	10	15	19	12	10	12	22	8	21	9
TTTTCTGAATATCACC	ref_5199_upstream	17	43	38	25	29	16	26	17	21	14
TTCTTGATTTGCGTGC	ref_5199_upstream	28	37	34	33	37	19	50	28	49	22
TTGAGTTTTATCACCG	ref_5199_upstream	21	32	11	16	31	18	37	21	36	21
GGGAATTTCGGATCTA	ref_5199_upstream	11	16	33	15	11	26	25	25	17	22
CGTTGCCAGGTTGCAA	ref_5199_upstream	16	18	23	22	17	23	32	11	21	15
GGATTACGCAGCGGTT	ref_5199_upstream	8	18	14	16	18	13	18	16	24	12
GACCGGGTTCAATGAT	ref_5199_upstream	8	11	14	12	21	6	6	9	13	7
CAGGGCAAACCGGTTT	ref_5199_upstream	90	116	112	78	89	63	124	67	107	68
GCTATCACTTGTTGCG	ref_5199_upstream	5	4	3	2	6	1	10	3	2	1
CCTCCCGGTACCGAGT	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
TCACCATGTTTTTATA	ref_5199_upstream	96	91	102	90	69	66	92	84	77	70
CCCACTAGACTCTTTT	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
TAGACTTCATGCGTAA	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTATTGTATCGTG	ref_5199_upstream	26	29	47	25	42	21	45	24	43	27
GCTACACATTACGAAT	ref_5199_upstream	1	2	2	1	4	2	5	5	3	2
GTGCGTGTGTCTTCCC	ref_5199_upstream	10	16	15	14	18	14	13	12	15	6
CCCACTATAAGGTAAT	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
TGCATGTTCGTTTTGT	ref_5199_upstream	269	207	316	259	229	252	219	257	279	226
ACTCGTGTTTTAAGGA	ref_5199_upstream	7	15	4	10	17	7	13	9	7	5
CCAGGGCCGTCAGTGG	ref_5199_upstream	35	56	58	34	54	32	64	44	60	39
GCAGGCAGTATAATAT	ref_5199_upstream	13	19	19	16	11	17	20	10	20	9
AGACTTGTACATCCAG	ref_5199_upstream	20	15	9	24	28	11	16	8	16	18
AAAATTCTTGAGTCTT	ref_5199_upstream	5	5	2	2	5	2	5	3	13	4
GTATCTAGCCATTTCT	ref_5199_upstream	24	15	22	19	21	18	24	23	18	15
CCTGCCTGCGTCGTTT	ref_5199_upstream	83	90	99	86	93	66	142	57	118	82
GAACCTCTCCCAGTTC	ref_5199_upstream	142	206	163	166	202	150	197	127	197	138
TTGGGCCATGGGAGAT	alt_5199_upstream	63	92	80	69	75	69	83	55	103	54
CACGTACACCCGTGAT	ref_5199_upstream	25	49	19	11	35	22	40	18	31	15
TCTTTGGAATCTAAAC	ref_5199_upstream	0	0	0	0	0	0	0	0	0	0
CCTAATGCTTTGGCAC	alt_5199_upstream	89	170	114	111	215	91	207	73	229	101
TTAGTCGGTATATCTA	ref_5199_upstream	21	19	14	17	21	9	33	11	17	3
AGCTCAGAATTGCTTC	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGAAAGATGGGAT	ref_396_reverse	42	45	45	36	29	45	44	49	38	34
AACGGCCATGTCAACC	ref_396_reverse	22	19	24	9	19	13	22	8	21	20
ACGAGGAAAACACAAT	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTTTCCCCCGCGT	ref_396_reverse	68	91	88	75	100	55	100	75	81	56
TGTCCCCACTATAGTG	ref_396_reverse	2	0	6	2	9	2	4	4	2	0
TTGACACGTTGAGAGC	ref_396_reverse	23	27	17	14	24	20	23	16	27	13
GGCGTTTAGACCTTCT	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTTGAGGTAATCG	ref_396_reverse	18	21	15	11	22	15	25	9	28	16
TCGAATAGCGCTGTAT	ref_396_reverse	3	4	6	2	5	2	2	3	3	2
CAGTCCAACGAGAAAC	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
TTGAATGAGATATTCG	ref_396_reverse	17	31	36	24	29	32	25	16	44	16
TAACGCAGTTTACTCT	ref_396_reverse	59	76	79	49	62	58	56	38	60	50
TCCTGCGGTATTGGTA	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCCTCATGAATAG	ref_396_reverse	16	13	19	8	17	9	15	16	16	9
GCCATCCGAATCTCGA	ref_396_reverse	200	245	256	220	294	217	289	232	322	198
AGTGGCAGAAAGTTTA	ref_396_reverse	185	252	184	181	212	154	245	156	298	163
AAATAGGTGGTTAGCC	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCCTAGGATATCT	ref_396_reverse	40	53	45	53	52	35	45	45	61	47
TTACGGAATCATTGTG	ref_396_reverse	46	60	58	54	63	48	67	49	59	47
CCGTAGTGCAGCGTGT	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCGCGCTCATGCG	ref_396_reverse	13	11	13	7	12	22	19	6	14	8
CTCAATCACTCTTCCA	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCTGCTCATGTCA	ref_396_reverse	18	21	20	22	18	23	20	16	22	11
CTTAGCTTAATTACAG	ref_396_reverse	23	46	33	22	30	19	48	16	26	22
GGGCCTGAACCTGTTA	ref_396_reverse	15	30	21	14	31	26	32	20	27	16
TACACTTGTGGGACTT	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTCCTTGCCGCTT	ref_396_reverse	209	220	222	194	248	166	252	169	240	180
GACGTCGCAGAGGGCC	ref_396_reverse	37	34	36	18	35	31	53	29	37	24
CGTTTCCGCATTGGGC	ref_396_reverse	8	8	13	4	12	8	16	7	9	7
CCGTTGTGTCTTCGTT	ref_396_reverse	57	75	77	46	62	40	63	49	76	46
ATTTCGATCTCCCAGG	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
AGCAGTCTTGGGGGTA	ref_396_reverse	0	0	0	0	0	0	0	0	0	0
TCAGATAAGAGTCTGC	ref_396_reverse	39	65	51	42	46	34	65	43	49	31
CATGGTTTAGCTGCGA	ref_396_reverse	5	8	10	4	8	2	9	5	15	8
AAGATTAAATGTTGTT	ref_396_reverse	55	92	66	59	98	83	90	55	98	52
ATTAGATTGGGGTGAA	ref_16_RC	13	16	16	8	29	9	14	19	34	17
CACTGATTCACCGTGT	ref_16_RC	14	33	32	14	30	21	37	21	26	15
TTTACCGGACGTGAAA	ref_16_RC	13	28	16	9	30	8	17	8	25	6
CTTACGCACTCTATGA	ref_16_RC	117	178	116	95	186	90	189	101	189	98
ACTGGTTCAGTACGTG	ref_16_RC	36	34	37	25	40	16	27	26	18	15
CTACCCTAGGTCTTTG	ref_16_RC	3	5	3	6	15	6	9	6	9	2
TGCCACATCCTCATCG	ref_16_RC	6	8	2	7	3	6	9	2	8	10
ATCAACTGTCCAATTT	ref_16_RC	31	73	51	47	52	28	62	23	67	37
GTCCCGTCTATTTTAA	ref_16_RC	2	8	2	4	8	2	3	2	9	3
GCTAAAGTTTAATCGG	ref_16_RC	38	57	36	32	62	37	51	38	49	38
TAAACTATCGTTGGTC	ref_16_RC	43	81	59	51	81	56	49	42	81	45
AGGTGTACTAGATTCT	ref_16_RC	1	4	1	2	4	4	4	1	1	4
TGACATTGGTTCATTT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TAGGACTCGTATTGCA	ref_16_RC	6	10	0	3	3	3	3	4	9	6
ACCCTACGTCTTAGGA	ref_16_RC	97	156	106	100	171	96	194	111	189	84
GGTTATACTACTGTGT	ref_16_RC	44	119	70	55	97	43	101	66	98	45
TCGTCCCGTAACGTAC	ref_16_RC	17	28	21	20	31	28	29	11	30	10
GTGCTCAGTTCATTAC	ref_16_RC	4	11	5	5	11	5	12	6	8	3
CGTCTTTCATCAATTT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
CTTAGTTTATCTCAGG	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GGACCTTATACCTTCT	ref_16_RC	8	6	6	1	1	6	13	6	6	2
GGGCTGCGTGAGTACA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GGATAGGGTGATCCGC	ref_16_RC	12	15	21	15	27	15	32	12	20	9
GGATCAATGCTCCGGG	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GAAGATTCCTTCTCCT	ref_16_RC	26	47	44	40	62	39	35	35	58	26
CGAAGACCCTGCCGGC	ref_16_RC	47	46	59	44	59	45	83	48	58	43
TATGGCGTAGTGATAG	ref_16_RC	13	42	28	14	39	26	36	15	41	40
GTGGTTACTACTTCCG	ref_16_RC	55	60	59	60	72	56	88	43	72	44
CTCATGACCTTTTCTG	ref_16_RC	19	29	25	29	21	18	25	27	28	22
TAATTTGGTTAAATCT	ref_16_RC	4	3	9	6	1	5	1	3	5	1
CCTAATAAGCTTTTAT	ref_16_RC	53	79	59	49	93	31	127	36	80	38
GTCAGCTCAACCGGGT	ref_16_RC	47	58	54	40	42	55	68	36	75	63
ACTCTGTCTCTCGTTC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
ATTCCAAATAACAACC	ref_16_RC	23	24	26	13	28	21	28	30	56	26
TACAACCTGCCCGAAG	ref_16_RC	31	75	36	44	76	29	78	36	62	32
TACACTATTCGCCACC	ref_16_RC	9	7	8	17	6	11	14	13	18	6
GTGTCGGGTAGAGGTG	ref_16_RC	64	74	52	63	71	43	104	55	110	51
AGATCCCTCAGGCTAT	ref_16_RC	2	1	2	6	1	6	8	2	4	0
AGGTGATAATCAATTC	ref_16_RC	33	64	57	55	44	40	72	27	70	39
GGGTACAAGCGCTCTT	ref_16_RC	61	129	89	94	136	86	126	70	124	75
TATTCCTTCGTTGCTT	ref_16_RC	10	13	15	12	24	11	14	6	23	12
CATCTCGCTAACAACA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TCGCGTCAGTTGGGTT	ref_16_RC	12	10	15	4	9	6	13	5	11	8
TTTTTTAAGTTGAATT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GAATGCGTAGACCCCT	ref_16_RC	27	26	19	25	34	17	34	18	34	16
TTGTCGCTACAGCTCT	ref_16_RC	66	87	79	54	81	46	96	65	82	46
CGCTCCTCTGGGAGGC	ref_16_RC	55	116	76	64	140	66	142	51	146	66
TTGGGTCAGCCAGATC	ref_16_RC	8	13	12	11	16	17	11	7	17	16
ATTGGTTAACGGTTAC	ref_16_RC	8	11	7	6	9	9	13	6	16	10
ATAGAGTGGTTAGACC	ref_16_RC	12	18	24	11	22	14	20	11	25	15
AGCCGTAACAGTACGG	ref_16_RC	49	94	74	67	100	53	98	73	120	58
CTGCATTATGTGCGCG	ref_16_RC	8	3	7	3	11	3	15	4	8	6
ATCTTGCGGTAAGATA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TCGAGCCTGCCACTAC	ref_16_RC	52	65	53	55	51	37	53	37	87	35
CTACGAGTGTCGTTGG	ref_16_RC	9	26	21	12	28	12	26	26	30	13
ATTTAGGTTAACAATT	ref_16_RC	57	85	54	64	84	80	95	60	93	34
TCGATGGGGCTTTTAT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TGATCCAATGTACTCT	ref_16_RC	11	19	8	16	15	19	21	10	13	10
TTTCGTCCGTCCCTTT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TATTTCTAATGAGCTC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
AATTTCCGAACCTCCC	ref_16_RC	9	12	8	5	12	0	14	7	11	6
GCAGTTTTTGTTCCGG	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TGTCATACTTGCCATA	alt_5699_new	173	248	169	175	309	137	295	141	333	131
GGGAATCCTAGTGCCC	ref_16_RC	2	19	9	4	20	12	14	4	12	8
TGCGTAGCTTGCCCGT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
CATCGTTGTATCTCCA	ref_16_RC	6	7	14	3	5	5	15	3	9	9
GGGTTTTAAGGAGTAC	ref_16_RC	43	60	76	35	56	32	56	47	59	23
GGCACGTTACATGTCT	ref_16_RC	83	104	101	100	130	61	141	76	133	74
CTGAAGTCCTCCCCTT	ref_16_RC	14	45	24	13	55	10	64	16	53	23
TGGTTTCCGGGGTTTT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
CTCGACCAAGCAATAG	ref_16_RC	8	13	14	11	16	10	22	3	22	6
GGTATCACGGAGAACT	ref_16_RC	39	58	44	38	65	39	59	52	42	30
TCTTAAGGGGATATGT	ref_16_RC	34	40	29	16	39	12	31	20	48	17
GTTCGACCGTCTTTCT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
CGGTCGCCTTATAAAA	ref_16_RC	0	2	0	0	0	0	0	0	3	1
ATTTTCTTGTGAGGTG	ref_16_RC	38	32	34	32	36	24	32	31	48	26
CCTTGATATTATTTAG	ref_16_RC	4	17	13	5	15	8	25	10	17	5
ATTCCAGCGCCTTAAC	ref_16_RC	45	98	60	47	80	44	79	43	94	37
GGAGTCACACCCGTTA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
ATCGGTGAGGCATCGA	ref_16_RC	50	69	71	57	70	56	78	50	72	32
TCTTATGGGCACTGAC	ref_16_RC	2	7	4	0	6	5	5	1	3	2
GTAAACCTGTGGTTGC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TCATGTGTCATGGGGA	ref_16_RC	27	27	27	29	25	20	44	30	56	15
ATTGCTTCGGATGGTA	ref_16_RC	18	31	22	13	27	15	22	22	27	7
CTTCCGCCCCTCGTTG	ref_16_RC	64	111	78	108	130	75	113	72	136	65
TCGTTATCTTCGAGTG	ref_16_RC	38	50	61	43	54	46	60	23	50	31
AAGGCGCTCATTCGCA	ref_16_RC	28	69	65	44	53	23	48	43	54	40
CCTGGGCACGCCCTGC	ref_16_RC	10	18	15	12	15	12	16	7	35	12
ATGACAGGTGGACGAG	ref_16_RC	40	65	43	27	78	40	82	30	70	32
TACGTGAACTATAAAC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TGAACCCGCTGTTTAC	ref_16_RC	25	30	22	35	30	25	45	17	45	15
CTGGTAGCACTTATCG	ref_16_RC	16	21	12	9	22	13	16	12	22	7
TCCTGTGTCATAAACG	ref_16_RC	3	11	15	6	3	4	19	4	9	3
CATCTCTCTCGCGACA	ref_16_RC	12	19	11	8	21	12	15	9	13	4
TTTCTTGTATGGGCGA	ref_16_RC	20	29	31	16	31	24	33	17	42	18
TTCTTCTTTAGTTAGG	ref_16_RC	29	41	24	27	30	22	27	12	46	19
TCCGGACGTTCTACGT	ref_16_RC	8	28	7	9	31	4	22	9	23	8
TGTTTTGCCCATAAAA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GTTCTCGCGTAGTACC	ref_16_RC	106	137	124	70	139	71	134	73	147	76
ATGCGTTGGCTCGTTG	ref_16_RC	3	3	2	1	5	0	4	1	1	1
CATGTCTGTGAGGTAC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TCTTCAAACGTTTGCT	ref_16_RC	61	118	59	64	100	40	108	52	111	37
GGGGAAGATGTAACTC	ref_16_RC	2	3	6	5	8	4	9	8	9	3
CCCCGGCGGATCATTT	ref_16_RC	2	2	3	4	8	4	4	1	2	1
GGGTGCGGGCTCAGGT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TTTAGCGATTTAATCC	ref_16_RC	5	9	3	4	13	15	9	5	7	6
TACAGTCACTGAATTA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
ATGTCACTTTCCCGAG	ref_16_RC	33	25	15	17	29	26	28	27	31	14
GTTGTAACCGGTCACG	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GGTCGCGACCCGTTGC	ref_16_RC	21	23	11	13	21	15	33	9	22	9
ATTTGCGGTACGTTCT	ref_16_RC	16	25	9	6	21	14	27	10	15	13
CTCCAGGTCTATCTGC	ref_16_RC	3	8	7	3	8	3	3	4	8	4
ACAATGGAGGACATCG	ref_16_RC	1	4	5	6	8	3	3	1	8	2
CCGCTCCAGAGTGTTC	ref_16_RC	26	88	55	52	81	46	107	52	90	51
CGTATTTCGGGCTAGA	ref_16_RC	0	0	0	0	0	0	0	0	0	0
CACAACCTTCGTGGCG	ref_16_RC	14	25	22	12	22	13	20	19	27	15
AAGTTAATCTTAGAAG	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GAGAGGCGAGTTAATC	ref_16_RC	13	14	21	7	26	12	23	14	20	15
TCAATCCATGAGCCGC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
GCAATAGGAGGCGCAT	ref_16_RC	6	5	10	6	7	8	14	3	16	6
GGTTTCTTCTTCAGCT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TTGTATTCTAGAACGT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TTACCTGTGGGACCCG	ref_16_RC	0	0	0	0	0	0	0	0	0	0
AATACCAATATCATAA	ref_16_RC	46	78	63	42	66	49	51	52	67	38
GTAACACCGCTTTTTC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
TTTCGTCGGTTGATGT	ref_16_RC	0	0	0	0	0	0	0	0	0	0
ATTTAAGTAGATTGGG	ref_16_RC	0	0	0	0	0	0	0	0	0	0
AGATTTTAGCATTATC	ref_16_RC	100	178	149	96	157	113	163	126	195	113
GTCCTTACACGGGCAC	ref_16_RC	0	0	0	0	0	0	0	0	0	0
CCTTGAACTGCAGTAA	ref_5198_reverse	44	14	56	45	29	46	25	48	16	51
CTTCTGTGGCTCTGGC	ref_5198_reverse	126	61	134	138	97	133	86	136	94	118
TAGGGCGTTGCTATTA	ref_5198_reverse	19	7	20	13	10	16	10	17	10	20
CGTGCATGTTAGCTCT	ref_5198_reverse	26	28	59	43	30	35	24	44	16	41
TAAAGAAAGTAGTCGT	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
CGGTATGCAAAACTTG	ref_5198_reverse	409	237	453	406	237	369	266	367	243	372
GGTTATAATGTAGCTT	ref_5198_reverse	121	52	125	114	57	117	57	109	58	107
TTTGCACCACTTCCCC	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTATCGTGGTTAT	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
TTGGATCCTGTCTGAT	ref_5198_reverse	50	32	66	53	23	36	25	38	29	47
ATACCGCTAATGAGGC	ref_5198_reverse	27	18	44	53	24	49	24	53	32	40
CACCTTCTATCGTCCG	ref_5198_reverse	41	41	72	55	24	41	38	47	36	59
AGGTCGTTTTGTTTCA	ref_5198_reverse	41	28	69	68	34	38	32	47	42	48
ATGCGATTTTGAAGAT	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGGCATGCGAGC	ref_5198_reverse	57	31	70	65	33	51	32	56	35	61
CCCGTTTACACCTCCG	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
CGACACAAGATCTAGC	ref_5198_reverse	14	3	11	12	4	10	3	16	4	11
GGTCCTATCATGCTTG	ref_5198_reverse	8	6	12	7	6	6	2	4	5	5
GTTTGTTCTTACTCAA	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTCTTGTATTAAC	ref_5198_reverse	86	47	101	89	46	73	46	95	56	83
GGAACCTTACTATTGA	ref_5198_reverse	137	82	174	172	106	125	107	151	108	110
TAGTTTGGTGACCGGG	ref_5198_reverse	126	82	186	117	61	135	93	90	70	119
CGTAATGGCGATAAAC	ref_5198_reverse	314	103	361	292	113	281	152	321	135	253
ACTCATTCTTAACCCA	ref_5198_reverse	122	44	138	133	52	95	78	140	56	102
AATCTTTAAAACCCAA	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
AGTTACTTAGACATAT	ref_5198_reverse	22	15	26	20	14	16	11	21	12	21
CTGGTCAGCTCTACGT	ref_5198_reverse	48	39	80	43	31	64	41	41	37	59
GACATCACTCACGCCT	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGCCAATGTATTT	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTATGGTGCACAC	ref_5198_reverse	57	38	66	66	29	62	35	53	43	37
ACCCAATGTTGTTCTT	ref_5198_reverse	12	6	11	12	6	13	8	17	6	7
CCTTGCAGATTTAATT	ref_5198_reverse	61	45	95	77	51	82	50	80	46	62
TGCGGATAGAGCGTAC	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
CTGGATCAACATTTTA	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTACTTCCAGCAC	ref_5198_reverse	331	209	330	333	182	296	198	280	253	309
CTTCTTTGCGGTTTGT	ref_5198_reverse	71	60	114	86	64	57	62	82	43	71
ACCCATGAACAGCGTT	ref_5198_reverse	29	37	20	26	23	19	29	34	35	21
CCCTTTCCGTTTGCGA	ref_5198_reverse	34	22	49	42	25	28	18	38	28	19
GTACTAAGACTGAACT	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGATGGGCAAGAT	ref_5198_reverse	58	33	114	74	45	73	37	58	35	54
TTCTTTGGAACTGTGG	ref_5198_reverse	44	32	48	60	24	47	31	39	30	35
AGCATTCCATGGTCGC	ref_5198_reverse	23	29	66	28	17	28	29	28	27	29
TCTGTATATTATCTGG	ref_5198_reverse	9	12	23	16	8	18	8	14	12	19
CACTCATGCCCCTTAC	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTTCAGCGTTAGG	ref_5198_reverse	32	17	26	24	21	26	12	18	16	23
CGCTCTCTGAGCATTT	ref_5198_reverse	28	19	38	28	14	20	15	26	13	13
AGGACCTGGTCAGGAA	ref_5198_reverse	73	37	104	85	50	75	45	78	46	68
CTTCTCTTACACCTAC	ref_5198_reverse	108	66	99	103	55	92	55	102	69	85
TGGTAGTTAATCTGGA	ref_5198_reverse	40	33	56	37	17	50	24	40	32	45
TATCTCGACGTTACAG	ref_5198_reverse	53	33	62	71	33	63	36	48	50	57
CTTACACACTGCATTG	ref_5198_reverse	81	84	115	109	85	83	84	64	86	76
AGCTGAGTTCTTAGCC	ref_5198_reverse	28	15	36	29	13	27	16	22	12	30
GCAAACAATGAAGGAC	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
TGGAAAGGTCCTATAC	ref_5198_reverse	45	39	64	40	41	48	38	58	33	53
GGTTTACGCAGATTTT	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTACTAGGTTTAA	ref_5198_reverse	154	82	176	160	91	159	88	139	74	140
TTAAATGTAATACTTC	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
GGTGCAAACTAGGGGT	ref_5198_reverse	184	103	223	184	96	166	85	177	119	155
GTTTCAGAGATGGGTA	ref_5198_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCATCGTGCTACT	alt_3303_upstream	28	14	34	25	17	31	15	34	14	39
GATCGCCCTTCCGGGT	alt_3303_upstream	90	41	85	86	43	60	30	72	42	56
CTCGCACACCGCATAG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CTAGTATTGCTGTACC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
AAGATTCGTTTTCCTG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CCACTTTCAAGGTGCA	alt_3303_upstream	175	390	205	215	441	165	454	178	446	161
TCCGTCGTTTGGGGTA	alt_3303_upstream	1	0	1	0	0	0	2	1	2	2
TTTGGCAGTCGGTAAA	alt_3303_upstream	10	5	17	15	5	13	7	12	6	13
AAGCGTGGTTGGTGCG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGAAGAGCGTCTT	alt_3303_upstream	49	25	76	71	36	58	30	70	30	71
TTATGCCATTCGTTTT	alt_3303_upstream	125	64	127	108	54	105	46	115	50	90
GCCTCCATCATTAGGG	alt_3303_upstream	15	1	9	16	6	10	7	8	9	7
GCTGTAATGTTACTGT	alt_3303_upstream	119	48	148	139	38	97	59	97	53	101
TTGTTCTATCTTCACC	alt_3303_upstream	55	26	71	52	22	59	25	53	16	49
AGCTGATTCGGCCGCG	alt_3303_upstream	95	39	121	94	46	59	43	79	38	82
TAGTCCCGCCACTTTT	alt_3303_upstream	87	51	82	96	39	79	35	69	38	71
CGTGGGGATTACTATA	alt_3303_upstream	49	25	63	66	35	61	26	36	30	32
GGCAAATTATTAGGGT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAACGGGTACGGT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CCCGAAAGTTGCCATA	alt_3303_upstream	44	27	61	52	34	41	27	47	20	39
ATGCGTTGTACTTGTG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GGGGAAATCTCTGCCG	alt_3303_upstream	88	50	155	99	51	97	51	114	39	75
GTAATGTATGATTGAT	alt_3303_upstream	45	16	58	47	23	50	30	48	25	45
ATTCAGCACAACGGTT	alt_3303_upstream	54	34	57	67	40	68	52	71	45	53
TTGTATTGTGCACCGC	alt_3303_upstream	5	1	8	6	1	3	3	6	1	5
ATGGAATCTAGTTCGT	alt_3303_upstream	165	91	206	191	92	162	103	148	94	132
TAACGCTCACTGCATT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TACCTTGTTTAAAACT	alt_3303_upstream	111	59	108	124	38	81	65	91	47	79
CACCCCGTGCAACTTG	alt_3303_upstream	34	24	29	29	17	33	18	25	25	26
GGGACTTTTATCGCCC	alt_3303_upstream	128	49	157	117	61	120	57	105	41	122
GCGATTGGTCTGGTTA	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCACCAGTACGCC	alt_3303_upstream	122	51	173	179	62	135	56	128	47	120
GTCTTGCCGTTAACTA	alt_3303_upstream	35	14	43	46	13	27	17	33	21	36
CGCAAAGATGTACTAT	alt_3303_upstream	111	71	131	129	57	90	99	118	118	100
AAATTTGTGCGCGCCG	alt_3303_upstream	56	30	85	80	52	47	28	79	36	73
GGCTTGTCTGGAATCG	ref_3303_upstream	321	154	433	330	192	300	155	308	225	294
TAGAATGCGTACAGAA	alt_3303_upstream	2	1	3	6	1	5	3	1	0	1
GGGCGCTGTCAATTGG	alt_3303_upstream	56	37	75	76	33	67	27	65	32	73
AAACACTGAGTGCATG	alt_3303_upstream	113	59	164	123	68	90	67	130	49	103
CTGTGTGATTTTCGTA	alt_3303_upstream	25	10	30	30	13	19	8	31	15	16
AAGGCACTACCTCGGC	alt_3303_upstream	17	5	21	6	5	21	6	10	8	23
AAAAAACCGTCTTTAT	alt_3303_upstream	36	20	40	38	31	43	31	26	18	35
TCGCGTCCTAGTCAAT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTGCATGGAGGTGCTG	alt_3303_upstream	11	10	12	16	2	15	12	13	5	15
GGTTTGTTCGCAAAGA	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGCCTTGTTCTTT	alt_3303_upstream	59	35	66	61	24	62	36	40	30	40
GTGTGTTCCCGCTGGT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
ACATTCCTCGTTACGC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCTTCTCGACATA	alt_3303_upstream	138	57	163	141	52	135	67	115	73	121
TATAATATAGGTCTCT	alt_3303_upstream	80	38	86	84	32	67	45	75	41	59
CTTCCTCTTGCGCGCG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTTTTCCAGATCG	alt_3303_upstream	8	10	10	7	1	8	8	11	7	11
CCGAGGATGTGTTCGT	alt_3303_upstream	71	34	73	69	32	73	54	79	39	64
AACCTCAGATGGCTTT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTTCGCAGCGAGT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TTCTACTTGCCGTGTG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TACTCTGTTTTAGTTA	alt_3303_upstream	97	44	120	102	45	104	36	95	48	62
TCGGAACCTTGTTGTC	alt_3303_upstream	68	54	125	109	62	87	65	109	75	83
CTTTTCTGTTCACATT	alt_3303_upstream	103	46	110	71	42	63	36	102	51	99
GTTTTTCTACGTCACT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCGGGAGCCATA	alt_3303_upstream	154	102	221	190	89	161	82	165	100	129
CATGCTTGGTAGCACT	alt_3303_upstream	76	43	97	90	49	90	62	70	55	71
CTTGCAGCATGGAGCG	alt_3303_upstream	197	78	223	218	92	180	112	173	100	182
CTCTCTTTAGTCTGTT	alt_3303_upstream	24	11	35	29	14	26	16	24	14	20
TCTCTACTCTGAGCAG	alt_3303_upstream	93	39	127	125	44	104	53	93	46	91
TACTTTTCAAGCAATC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTCTTTAATCCC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTAAAGGTGGTTC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCTGCGGATTGTC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGAATTACTCTCG	alt_3303_upstream	72	28	72	58	24	62	32	54	36	63
GGCGCGCAACCGCAAC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CTGATCCGGCACTGGG	alt_3303_upstream	86	75	100	112	42	63	57	78	73	87
CCGTACTCGTAGAGTG	alt_3303_upstream	140	86	170	144	72	121	89	135	78	134
TTTTCCTCCTACGGTG	alt_3303_upstream	104	48	142	100	45	95	49	99	49	77
ATTGGCCACCTGTTAT	alt_3303_upstream	11	6	21	12	14	11	11	10	10	11
GTAACATGTTTGTTTG	alt_3303_upstream	81	33	118	100	47	52	39	87	43	70
ATATAATATTCATATC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCCTGTATTGTTT	alt_3303_upstream	64	39	110	96	38	77	40	92	54	85
TTGCGTTACTCGTTCT	alt_3303_upstream	58	34	105	74	46	75	37	82	47	73
CTGTGCGGTACAGGCC	alt_3303_upstream	8	6	16	5	9	5	19	7	3	4
CGGGTAGTTAGCGACC	alt_3303_upstream	30	15	36	45	27	42	12	54	26	46
TTAATTGACCTATCAT	alt_3303_upstream	990	452	1249	1084	458	943	548	972	463	882
CATTAAGGAGACACCC	alt_3303_upstream	12	6	15	12	9	7	8	12	10	19
AGCACGTGTAACACCC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CGTACATTAACACGCG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGCGCTTTAGGTG	alt_3303_upstream	6	1	6	7	1	4	2	3	2	2
AACTCACCTTGGTTCT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGCATGCCATTCT	alt_3303_upstream	55	17	70	55	24	40	22	53	29	49
TCGGTTTACCTAATGT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTGTGGTTGATTC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CTTAATCAGACGTCTG	alt_3303_upstream	6	10	13	17	15	13	5	16	7	7
GCCCTAAGTTAATTTG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTTATAAGAGGTG	alt_3303_upstream	26	8	21	26	9	27	9	22	11	26
GGCGCGCGCCCAGGAC	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
AGTTAATTCGCCACAT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTGCGAGACGAGC	alt_3303_upstream	139	50	127	107	39	95	54	97	65	99
TCTGTCTAGATATATA	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CTCCAACTTCGATCGT	alt_3303_upstream	269	121	322	284	124	227	126	265	149	226
TTATTGGTCTGTATAT	alt_3303_upstream	50	28	63	52	30	45	31	51	24	39
TCGCAGCAAGCACTTG	alt_3303_upstream	62	43	108	85	38	67	39	76	35	55
ACGCATGCTCTTATTC	alt_3303_upstream	75	18	101	66	29	67	38	49	34	55
TGTGGTACTCTTACCC	alt_3303_upstream	61	26	64	57	36	56	44	32	26	51
TGAGGTGGCACCACGG	alt_3303_upstream	60	16	61	60	18	58	18	51	24	48
CTGTTAGCTCGGTACT	alt_3303_upstream	81	50	93	102	54	74	46	87	54	61
TATGAGGGGACGGCTC	alt_3303_upstream	69	23	103	68	32	61	27	79	33	71
GCTTAACTGCATACTA	alt_3303_upstream	85	28	105	115	44	86	47	66	42	70
TAGTCATACTAATCGG	alt_3303_upstream	21	10	32	17	5	17	13	28	7	16
GCCTCTTTACGCACTA	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGTGAAGTAGCTT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTACATCCGTCTGACA	alt_3303_upstream	15	7	12	20	21	13	7	18	10	7
TGATAAGCCTTACGTA	alt_3303_upstream	26	19	55	44	23	40	48	41	17	33
CTTTCAATGAGGCGCG	alt_3303_upstream	59	20	87	84	47	69	34	51	22	71
CCGTAATATCTTATCA	alt_3303_upstream	438	222	537	439	221	376	234	418	194	352
CGGGGTATGCTCTAAT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTTTAGCCTACTGGAG	alt_3303_upstream	61	28	90	81	29	66	39	75	46	72
AGAGATATACGCGTTA	alt_3303_upstream	174	84	221	156	81	165	80	158	87	146
GGAAATCCCCCGTTAT	alt_3303_upstream	246	104	352	300	129	265	120	241	120	216
ATTTTTTGACTTCGTG	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
TATTGAGTGGCTTCCG	alt_3303_upstream	293	114	307	312	137	298	126	284	146	236
AGTTAATATTACCGTT	alt_3303_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGTTGTGTTAGCT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TAAACCCTAAGTGCCC	ref_5038_reverse	63	28	78	64	34	46	31	45	30	38
ATGTGCATCCTTCGCC	ref_5038_reverse	44	24	46	47	30	33	31	56	32	35
TATTATTTTGCGGCTA	ref_5038_reverse	366	153	410	402	199	362	198	322	220	294
CGGATATGACGACGAT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGTAAATCTTCTT	ref_5038_reverse	49	25	41	47	14	33	22	19	29	35
ACACTGGTATATCCGT	ref_5038_reverse	53	19	38	38	25	53	16	43	26	37
TCGCTCGGTACAGGAG	ref_5038_reverse	52	14	57	39	25	38	20	42	21	30
TCGTCCCTCCACCCTT	ref_5038_reverse	154	88	209	185	98	161	122	181	89	149
TCGGGCGCTCCGCCTA	ref_5038_reverse	139	69	218	142	67	146	58	123	82	144
CTTCGAGTGTGTTCGT	ref_5038_reverse	485	257	586	556	273	520	267	431	257	395
TTTACACATGAAGGCC	ref_5038_reverse	52	30	49	43	9	49	19	43	15	30
CAAGTTTTTCCCTCGC	ref_5038_reverse	10	17	11	15	15	15	7	17	6	12
GTCTTTCTTCTGCCGG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
AGCCAGCGTCCGTCCT	ref_5038_reverse	196	89	229	240	92	171	107	187	115	166
CATATTTGAGCAATGT	ref_5038_reverse	147	97	176	175	62	130	84	128	71	122
ACCCTATTACGCGCAC	ref_5038_reverse	49	25	57	38	24	41	25	36	25	40
GAGCTTTTTCACGATC	ref_5038_reverse	19	19	25	16	11	16	13	17	12	20
GTCCGTGTAGCACTGA	ref_5038_reverse	54	30	70	52	20	65	28	65	22	40
ATACGTATGGTTACCG	ref_5038_reverse	357	186	513	379	205	351	181	351	188	324
TCCCAACAGCACAATA	ref_5038_reverse	9	3	13	13	4	7	7	12	10	6
ACCAACTTCTCATGGT	ref_5038_reverse	23	13	22	16	13	17	11	25	6	12
GCTCGAAATGTTTGGG	ref_5038_reverse	9	4	4	5	4	1	0	3	2	7
GATAACGGGGTTCCCA	ref_5038_reverse	44	11	38	41	17	22	11	31	13	33
CTCGACTTGTTCGCTT	ref_5038_reverse	395	205	437	383	169	337	195	339	218	324
AGGATCCCAGCTTTAG	ref_5038_reverse	45	14	38	24	17	27	17	32	21	37
GTAACTGCCATTCCCG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGGTAGACTTGT	ref_5038_reverse	7	9	6	18	3	14	5	8	9	7
CCGTGGAGCGGGCCTT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCTATTAGGCGTC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTCATGCTACTCG	ref_5038_reverse	26	26	28	30	30	16	33	24	17	25
CTGTCGGATAAGTTAG	ref_5038_reverse	124	91	134	140	80	117	82	128	75	99
AATCGGCTAACAGTAG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GCATGCTGGTTAGTAC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CCATATACTCATAGTG	ref_5038_reverse	78	44	82	74	35	84	34	56	51	56
ATAGAAACAGTCTTTA	ref_5038_reverse	36	20	32	35	35	23	25	27	14	22
CTGCCGCCTGGTGAGT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
AAACGGTTCGGACCAT	ref_5038_reverse	358	189	434	392	151	344	215	363	192	297
TGACCTTGCTTTTCGT	ref_5038_reverse	175	71	244	209	104	152	87	177	72	188
GCGCAAAGTTGAGGAA	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGGACTGTTGGGG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTGCTTTTGTCAT	ref_5038_reverse	20	12	28	26	14	13	8	23	8	21
CACGACCTTAGTGTAC	ref_5038_reverse	20	16	17	22	21	21	16	26	8	21
TCACTTTACAGCAGTT	ref_5038_reverse	42	22	40	45	26	44	29	53	27	34
GGTTCCGCTCATCTTT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGAGTGTGTACGT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TGATTCCTAATTCGCT	ref_5038_reverse	32	14	41	36	8	23	13	34	19	32
CAATGTGTGGTGTGTA	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GAGGCGGTCGCCAATG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGTAGCACCGACG	ref_5038_reverse	17	4	17	19	6	11	14	13	5	9
TGAGGTTTAATAGTAG	ref_5038_reverse	76	36	101	89	36	52	50	94	47	60
TACGCTTCCGGTCATG	ref_5038_reverse	128	68	156	138	45	96	75	86	73	105
GGTTCGCGGTTAGATT	ref_5038_reverse	75	50	107	79	51	86	44	69	52	65
CTCTAGCGGGGGTTCT	ref_5038_reverse	9	9	12	8	3	15	7	8	9	13
TTTGTCTGTCGGATTT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTCGGGGTGTAGG	ref_5038_reverse	211	111	233	202	116	208	157	185	113	193
TATTACAGTAAATCTC	ref_5038_reverse	43	22	66	68	22	58	20	39	26	20
CTTCTATGACATGAAT	ref_5038_reverse	13	13	17	27	10	14	11	18	9	10
GGCGGTCTATGGTTCT	ref_5038_reverse	100	59	103	121	64	91	65	85	46	89
GCCTTATTTTGTTGGT	ref_5038_reverse	239	121	297	232	150	218	147	231	157	197
TCCCTTACTGTCTTTT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTATGCAGTCGTCACA	ref_5038_reverse	50	43	44	57	41	57	29	48	42	41
CAGATCACTAGGTAGC	ref_5038_reverse	57	21	71	54	16	41	20	51	25	61
CTAAGATGAGTATTAC	ref_5038_reverse	197	104	244	193	97	212	122	180	107	193
GCTTATTCACGGGTGT	ref_5038_reverse	57	26	80	75	35	67	48	57	34	48
ACGTCCATGGGCGTGT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTTACTTCAGTAA	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GAAGGGGACAGACTCT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
ATTACGGCATTCGTCG	ref_5038_reverse	165	70	184	185	88	149	55	177	85	131
GCGACGAAAAAATGAC	ref_5038_reverse	46	19	60	62	23	47	26	52	25	35
TAGGATTACTAGGTTT	ref_5038_reverse	13	6	15	6	10	7	11	9	9	16
TTTACTATACCTCCAG	ref_5038_reverse	7	6	9	9	5	3	6	4	2	2
TATCCCGACTCAACGC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTAAGCCCTGGTC	ref_5038_reverse	31	17	45	47	12	38	16	46	26	35
TTCCTCACCGTGGCTA	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GGCTAGCCCGCTAATT	ref_5038_reverse	288	132	395	337	194	298	188	309	198	260
CCCTGCTGGTGTTAAT	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CATTCACACTCTCAAA	ref_5038_reverse	29	21	47	26	15	30	15	27	28	34
GTTACCCTTATGCCAC	ref_5038_reverse	141	105	244	184	107	159	100	143	96	119
GTCCTTCTTAGCTAAA	ref_5038_reverse	40	9	36	35	17	26	16	46	18	21
CCTTAGGTACAAACGC	ref_5038_reverse	42	32	63	72	26	38	23	33	8	38
TGGGTGTATAATAAGG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCCGGCACCGCCC	ref_5038_reverse	147	99	191	156	105	142	116	126	105	138
AGGTCTGCAATTACTC	ref_5038_reverse	69	41	82	66	41	74	49	62	47	68
TAATTTGTCGTTACTC	ref_5038_reverse	49	25	62	50	16	46	36	44	23	55
AAAGGAAGTCGGCCTG	ref_5038_reverse	23	7	8	11	6	9	3	12	7	7
TCTGTATAACAACGGC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GAGGATTAATTGGGCA	ref_5038_reverse	147	81	162	143	87	165	101	150	69	147
GGTTAAAACAATCAGG	ref_5038_reverse	107	73	139	131	82	97	78	87	78	123
TACAGCAGAAGCTTGT	ref_5038_reverse	411	202	479	483	204	386	223	405	225	347
CTTCCCGTCTGGTTAC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CCTGATTACCAGCCTA	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CTACTGGGTCCTTCTT	ref_5038_reverse	62	32	74	54	28	71	25	62	15	54
GGAAAAAGCTCGCCCG	ref_5038_reverse	0	0	0	1	0	0	0	0	0	0
CACCATTTGACCATGC	ref_5038_reverse	37	64	58	74	75	56	47	57	52	34
TGGTAGTATGCCGATT	ref_5038_reverse	135	61	150	151	59	117	56	132	47	93
GCATTCGTTAAATACT	ref_5038_reverse	9	5	15	6	2	13	5	4	4	10
ACGCATTGCCACGATA	ref_5038_reverse	85	36	114	88	39	73	39	64	53	72
GAACGTCCACATCACA	ref_5038_reverse	88	38	115	112	60	89	51	108	60	103
TCGTATGTACCTGTCG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
ATACCTTAAGGAGCTC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGCAATAGTCCCG	ref_5038_reverse	152	85	177	137	85	129	116	147	85	148
TCTTCACATTAGACAT	ref_5038_reverse	49	15	61	64	16	32	17	50	26	46
AACACCATGGCTTAAC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCCGCGTGGATTC	ref_5038_reverse	2	13	3	0	17	2	8	0	23	2
TGGTACAGGATACCCC	ref_5038_reverse	31	23	26	20	30	31	32	26	23	21
CCTTTGAGTGTTAATG	ref_5038_reverse	10	8	8	7	7	9	3	8	11	4
AACCCTAACTTCGAAT	ref_5038_reverse	20	8	19	16	9	13	14	24	15	13
TTCCTTGCTGAATCCA	ref_5038_reverse	102	43	146	125	47	100	59	80	59	85
CTGCGCTTTCTAAAGA	ref_5038_reverse	72	48	121	76	42	70	37	85	51	65
TCATTGAATCTAACGT	ref_5038_reverse	193	85	217	197	75	179	105	143	96	146
GCCGCATGAGTACCGC	ref_5038_reverse	35	18	48	46	20	40	25	49	28	43
GTACCATATTTATTTT	ref_5038_reverse	24	7	19	12	3	5	7	12	10	14
TTGTTGGGTATGCATG	ref_5038_reverse	32	4	37	30	24	32	14	28	17	24
GTACAGGAATCCTAGT	ref_5038_reverse	203	94	239	228	117	195	122	246	100	183
TATATGCTAACACTTG	ref_5038_reverse	2	0	0	1	0	0	2	0	0	0
GTGTTCACTGGAGCAC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CTGTACTTCTGAAACG	ref_5038_reverse	46	23	75	50	31	44	29	53	29	45
GCTTTATCGTTTAATG	ref_5038_reverse	27	20	42	23	17	28	14	27	13	23
TCATCAGTGACGGCGA	ref_5038_reverse	141	55	168	133	66	108	49	120	57	120
TCTGTCTGTTATTACG	ref_5038_reverse	66	20	72	53	40	56	38	59	32	61
AACCCGCGTATGTATA	ref_5038_reverse	35	12	38	28	9	30	15	33	13	26
CACACGGCACGTGGCG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GATTCCCTGTCTATCT	ref_5038_reverse	306	111	380	288	99	265	113	276	126	226
CCGCCGATGTTCGTCA	ref_5038_reverse	51	28	47	46	30	41	21	41	34	26
TCACTGAATAGGGGGA	ref_5038_reverse	55	26	48	36	29	53	21	38	30	34
CGCGGCTCTTGGGCAG	ref_5038_reverse	25	10	26	20	11	27	16	25	21	21
CTTGTGGTTACTCGGG	ref_5038_reverse	51	17	60	43	29	41	18	48	21	40
ATTCGATTGGCTCTTA	ref_5038_reverse	366	174	408	379	136	312	208	348	171	314
TTGAATGTCAGCGTTT	ref_5038_reverse	14	8	23	18	9	26	8	15	14	17
ATTTTCCATGTATATA	ref_5038_reverse	137	65	170	158	84	152	63	136	74	129
TTTTCTTCACCACTTA	ref_5038_reverse	112	62	126	133	66	94	56	125	47	119
TTGATATATCCTCCCG	ref_5038_reverse	91	49	115	94	54	78	56	77	49	56
CTTTGGCAATTTCGCC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TCTGATTAATTTGTAG	ref_5038_reverse	57	37	76	82	28	94	37	69	39	55
TAGCCCGCGCGGTCTG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTCGGACTGGCGT	ref_5038_reverse	25	10	30	29	12	22	9	24	22	15
GTCTGTTTTTGTGTAC	ref_5038_reverse	33	12	43	43	22	40	28	37	19	34
ATGGGCTTCCGCTATT	ref_5038_reverse	35	18	64	53	30	56	35	42	31	48
TCACGTTGAGGTGTGA	ref_5038_reverse	61	29	35	33	21	49	23	41	20	48
AGCGTGCATTAGCACG	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTGCATATGTTG	ref_5038_reverse	211	108	264	228	106	248	106	233	137	168
TGGCTTACTGTCTGTT	ref_5038_reverse	18	10	24	20	5	23	11	17	4	9
TTTGTCTTTATCTCTG	ref_5038_reverse	109	55	107	74	57	92	40	109	43	81
AACCCACTGGATTTAA	ref_5038_reverse	56	23	115	71	35	90	33	78	25	57
ACATGGTTTATCGTCC	ref_5038_reverse	137	81	182	148	67	141	90	145	56	131
TCCTCGGTTTAGGTTC	ref_5038_reverse	104	76	125	111	39	102	68	112	60	93
GGAAAAAGCTCGACCG	ref_5038_reverse	1272	643	1574	1367	656	1189	688	1293	733	1185
CAGATTCAGCATTGCT	ref_5038_reverse	260	127	280	291	125	243	133	247	132	228
CTACCCTTTGCCATAA	ref_5038_reverse	55	60	94	77	50	55	37	75	47	44
ACCAACCTCCGGGTTT	ref_5038_reverse	19	19	21	15	17	16	20	20	21	11
CATAGAATCGCTTACA	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCAGGGCTTTACC	ref_5038_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCCTGCATCACT	alt_4170_RC	68	75	77	74	74	89	64	78	81	56
AGCGGTGTGCCGTTTT	alt_4170_RC	14	5	16	10	9	12	5	12	14	10
GCTTCTCGCCGTCCCG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CGCGCTATGACGGGTC	alt_4170_RC	57	48	57	56	35	55	49	46	36	57
GGACCCTTTTGCGGTG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CAGGCATAAGTTCCAC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
ATAGGATGTTGGGCGT	alt_4170_RC	9	11	28	20	19	17	22	19	24	14
TATCATTTAAAAGGTG	alt_4170_RC	64	64	73	66	65	67	76	61	81	56
AGAGGCAACGATGGGT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TTGATTCCGGTGGTAA	alt_4170_RC	63	60	89	75	70	67	71	74	45	61
TAGGTTATTATCTCGT	alt_4170_RC	7	13	14	9	9	10	14	12	9	10
GAACCATACATTTTTC	alt_4170_RC	8	5	10	5	5	2	9	4	7	4
GCCAATCGTGATATCT	alt_4170_RC	1	0	2	0	1	1	0	1	0	2
CGCGGGCTAGCGGTTC	alt_4170_RC	25	16	31	32	26	14	22	22	23	15
CTCCGTCGCGCGTATC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TAAAGTTCGGGGATAG	alt_4170_RC	35	39	43	29	45	40	20	36	25	34
CGGGCATAAGTTCCAC	alt_4170_RC	90	72	115	105	81	107	81	72	93	91
ATTTACGTGCCATTAA	alt_4170_RC	38	24	40	27	24	30	34	36	19	35
CGTACTATGGACTTAT	alt_4170_RC	17	5	15	10	17	4	14	11	10	7
TATGACTCCTGGAGGG	alt_4170_RC	134	93	124	132	106	113	80	96	89	106
TCTTCTGGCCCTGCGA	alt_4170_RC	8	9	14	11	8	17	10	13	20	14
TCATCTCGTTTGTGGC	alt_4170_RC	94	52	73	77	64	63	59	86	74	53
CGTCACTGATGGACAT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CTTTAGGCGACATGTC	alt_4170_RC	115	95	142	122	89	105	131	127	109	88
CCGCTTTTCGCGTGCA	alt_4170_RC	7	14	9	6	11	11	19	9	18	11
GATGCGTTATAGGCGC	alt_4170_RC	26	20	26	24	14	34	27	20	24	16
TAACCTGCTCTGGGCG	alt_4170_RC	15	14	15	13	9	16	21	9	16	21
CTCCCTTATCTGTATC	alt_4170_RC	1	5	1	2	3	2	4	1	6	0
AAAACTGAATATCTGA	alt_4170_RC	23	16	17	16	16	26	17	17	26	20
TTGTATAAGGTCCTGG	alt_4170_RC	12	11	9	6	12	7	7	5	11	8
ACTGTCGCTATCGGTT	alt_4170_RC	17	7	8	5	9	11	11	9	10	9
CCATCAGCATCTCACG	alt_4170_RC	39	32	51	45	38	51	44	42	39	45
GTGCTTCTCTTAGCCT	alt_4170_RC	0	1	2	0	0	3	0	1	2	2
CGTGAACCTTAAGGTC	alt_4170_RC	25	17	16	24	21	23	26	24	20	24
GACTGAACGAGGCAAT	alt_4170_RC	12	13	23	24	21	15	8	12	14	16
AGTGTTGAGTTACGTT	alt_4170_RC	26	27	32	32	34	41	45	27	31	37
GGCGTAGTCAGGGCGT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TATTGCTTTCTACTTA	alt_4170_RC	123	98	125	137	93	113	100	111	77	104
GGCTAATCGCACTGTG	alt_4170_RC	34	28	25	33	26	22	36	26	23	27
CCTCGCCATTTTACTT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TGTTCCCACATTGTTA	alt_4170_RC	3	4	7	11	5	6	7	6	12	3
CTGAAGAGGATTGAAC	alt_4170_RC	19	18	26	20	16	13	16	11	22	10
TTTAGTTTACCTCCGA	alt_4170_RC	11	8	13	18	9	12	14	6	12	12
CTATAGGATTTTGTCA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CCTAAATTTGCCTGTG	alt_4170_RC	40	96	48	61	86	63	97	65	80	48
TTGCAGGAGTATACTA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GGGGTACGTTCCTCGT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GGGTCGGATAGTTTTG	alt_4170_RC	18	20	25	22	15	16	11	10	22	11
TCGCGCGAGGAGGGTA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CCTAGGTCCCACCAGT	alt_4170_RC	90	85	123	100	90	81	82	78	83	92
TCAGCTTTCACTGAAT	alt_4170_RC	42	51	55	47	56	28	29	38	46	46
CTTTCCTTTCCGAGGT	alt_4170_RC	6	1	5	10	3	5	8	8	8	9
ACTATTTCGCGTGCTA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GGTATTGTCTGACCCT	alt_4170_RC	13	10	7	7	9	8	13	3	13	8
CAGCGTATCCTTAACC	alt_4170_RC	22	20	16	25	31	18	26	13	30	14
CAATAGGTTCTCAATT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
ATCTTAGACCGGGGTG	alt_4170_RC	14	11	14	12	23	11	15	19	15	13
ACTCTTTACATCGTTA	alt_4170_RC	57	58	61	70	64	65	59	52	59	39
TAGCTGAGGACTCGGT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CGGGGAGTTAACGTTG	alt_4170_RC	1	2	1	4	1	3	5	2	2	3
TTTCGAGCACTACTGG	alt_4170_RC	6	6	14	11	6	9	12	12	8	15
CTTTCTGTTTGAACTG	alt_4170_RC	6	8	6	2	5	2	5	4	7	5
CAATCCTAACGTTTAT	alt_4170_RC	1	6	4	7	1	1	4	2	1	2
CGTACTTTTTTCAAGT	alt_4170_RC	60	76	68	81	65	73	76	65	77	58
GATCCTCATAGTACCT	alt_4170_RC	16	5	15	4	11	12	7	16	6	6
TTCTCGCAGCGAGCTT	alt_4170_RC	3	9	2	7	15	6	11	3	15	3
AATTCTTGCGGTATTC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TTTTACTTAGGCGCTA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CGAATACTCCACCACT	alt_4170_RC	14	18	13	21	9	25	16	13	19	21
GTGTTAATGCGGTGCG	alt_4170_RC	24	43	42	33	41	29	47	29	22	38
CCTCCTTTCCGCTTCA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GTTCTTTGGTTTTGGT	alt_4170_RC	170	145	232	176	161	176	174	162	162	140
CGAAGCTGTCCGCGGG	alt_4170_RC	18	22	26	17	19	22	25	16	25	10
GCTACAATTACAACAA	alt_4170_RC	66	50	53	57	53	59	53	50	44	43
TCCGTGTCCCCCAGTT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
AATACTTTGCGATCTA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GCTGTCGCCTGGCCAC	alt_4170_RC	86	79	102	67	75	67	77	65	85	77
GAGCGCTCGTATAACT	alt_4170_RC	107	85	127	108	106	114	104	105	101	105
TTTCTTAAGCTGATTC	alt_4170_RC	45	49	79	49	55	44	51	45	55	57
AGAACGAAGTATCCCT	alt_4170_RC	120	118	157	151	118	135	136	121	117	106
GTCAATGACTCCGGGG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CCCGGGCTCAAAAACG	alt_4170_RC	5	1	5	8	2	4	4	5	8	5
GCCTTATGAAATCCTT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TTTATCAGCCCTCTAA	alt_4170_RC	18	15	21	13	12	19	10	16	17	14
AGGTTAGCATGTACTC	alt_4170_RC	39	26	67	33	34	46	37	36	41	44
GTAACTTACGGCTTAC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TTAATCCTATAAACTC	alt_4170_RC	13	12	24	18	9	12	16	17	22	15
ACGTTACTGTTTGGAT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CGGATCGGTTAAAACG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TCACAGTTAATTTGAA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CATTGTGTCCGTACTG	alt_4170_RC	22	18	15	14	13	19	12	22	23	7
ACCACCGGCCCGACGC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
ATGCTCGGTTCATTTG	alt_4170_RC	17	30	35	22	20	26	27	25	24	22
TTCCTCTATTACTTTG	alt_4170_RC	38	25	52	38	32	36	35	33	43	41
GCCAGTTATGAAACCC	alt_4170_RC	1	4	3	4	3	3	2	5	6	3
ATCCGATGTTTTGGGC	alt_4170_RC	61	37	63	37	53	48	53	42	41	43
GTATCTTATCATTCAT	alt_4170_RC	3	5	4	6	2	5	2	5	3	5
CGCCGTGCATTGCGGG	alt_4170_RC	7	4	5	3	6	2	8	9	10	7
CAGTTCGTACTCTTTG	alt_4170_RC	43	40	47	22	50	37	42	48	35	40
GTAGTTTAACTTTCTG	alt_4170_RC	49	51	59	38	35	56	47	49	24	29
ATAGGTACTCGTTTGA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TATTTCCAGGCCCATT	alt_4170_RC	12	11	26	20	13	18	16	18	32	21
GGACCGCGTGAGCAAA	alt_4170_RC	180	150	213	161	185	199	170	150	178	155
TGTGAATGAAAGTGCT	alt_4170_RC	25	36	41	40	38	28	50	33	36	16
TTCGATTTCATGTTTT	alt_4170_RC	23	26	35	28	13	24	16	33	24	23
CACATACCATTCCGCA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GTAATCTGAATATTAG	alt_4170_RC	18	17	25	35	26	25	21	23	40	23
CAGCAAAATATCCATT	alt_4170_RC	56	62	61	70	61	50	59	50	64	38
GTTTGGCTGTTGTCTG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GACTCCGATAGCAACT	alt_4170_RC	3	8	3	2	10	1	11	1	10	2
CTCCGAGGCGCCTCTA	alt_4170_RC	294	167	312	270	165	268	164	236	185	234
CATCCGAGAAAGCTCG	alt_4170_RC	5	2	14	10	5	9	4	7	12	14
TCATAATGAGTGGATC	alt_4170_RC	20	22	35	32	21	25	19	30	30	19
GATATACCTCTATTTA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GTTTACCCCCTTCCTA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TAGATAGCCAATGAGT	alt_4170_RC	12	14	20	25	7	15	22	14	20	24
ACGAGGATCAAGTGAA	alt_4170_RC	54	48	57	48	26	48	43	41	38	43
GATTTCGCCCTAGGTG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TAATAGTCGAATCTGT	alt_4170_RC	82	74	110	90	75	82	59	76	62	72
GAGTAGGTTGGTCCCT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
ACGGTCTAAGGGACTA	alt_4170_RC	8	11	28	17	9	13	11	12	12	13
TCCTTTCCAGGTGTTC	alt_4170_RC	23	36	27	25	22	17	18	18	30	15
TGTTTCGTAGTTCTGG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
ATCCCCCGATTTGCGA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GCATCTAGTTCTCTAA	alt_4170_RC	25	54	49	30	31	29	39	28	33	35
GTTTGTGCGTAATATT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TACGTCCGGATGTTAT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
AACCGGAAGCTGCTGC	alt_4170_RC	2	10	10	6	8	4	12	3	15	9
ACTCGACGGGTCTGTC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GACCATGTGGTGCGAG	alt_4170_RC	85	78	116	73	79	76	78	75	73	78
GTGGTCTTACAACCTG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CGTCAACCTCGGCATG	alt_4170_RC	11	10	10	12	7	7	15	10	10	11
CTGAGAATTTACGCCT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GTAAGGGCGTTATATT	alt_4170_RC	292	225	303	285	219	245	255	256	236	243
CTACAAATTCGCTCCG	alt_4170_RC	6	7	10	14	14	10	4	5	7	1
CCGGGCTTGATCTTTA	alt_4170_RC	15	17	27	17	8	12	13	14	20	23
GTGGGTTGAATCCCAT	alt_4170_RC	15	11	9	14	9	14	13	19	16	12
TCGTATGTGTTCGCAA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TCTTCGACTTAATATT	alt_4170_RC	0	0	2	2	1	0	0	1	0	1
TGTGCCAGGTCTGCGT	alt_4170_RC	3	5	5	2	1	4	3	2	2	0
TGGCCACGACGAGACA	alt_4170_RC	16	9	16	5	8	9	6	15	11	14
CGGGGCTTGGAGCTTC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GAAGCGGCCCCTTGGG	alt_4170_RC	33	26	48	41	25	55	38	54	36	41
GAAACTATATTACGGG	alt_4170_RC	58	61	74	57	57	56	47	52	76	67
GCGCTGGCCCGGTTTC	alt_4170_RC	19	13	19	11	9	13	15	15	12	4
TTATTTGGCTACATAG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CAGATGGGCCCGCCAG	alt_4170_RC	146	93	139	151	84	125	115	126	115	116
GCCACAGAAATTGAGG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GGATCTTTAATTATGA	alt_4170_RC	53	27	30	41	26	36	35	39	31	39
AGTTCTTCCTTTTACA	alt_4170_RC	35	32	39	30	25	20	22	33	23	38
ATCTATGCCACTTCTG	alt_4170_RC	23	16	16	24	31	14	7	15	16	16
TTAGCGAATAAATAGT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GGAAGTTTCCATTTCC	alt_4170_RC	12	13	16	16	10	12	13	17	15	10
CGTTGGTACTTGTTCG	alt_4170_RC	28	17	29	36	28	30	38	21	24	25
CTAGCCTTCCCGAGCA	alt_4170_RC	26	25	41	34	26	21	33	37	26	30
ATGGGGGTTTCCCCGC	alt_4170_RC	58	52	76	47	50	56	61	43	29	54
TTCGCCTCCCTTCGGA	alt_4170_RC	53	36	56	39	56	55	49	47	46	45
ATCCCACTTGCATCTG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TCCCTACAGTTCAATA	alt_4170_RC	9	18	9	19	16	6	31	13	31	5
GTGCTTCGTTCCACCC	alt_4170_RC	7	6	13	10	10	13	9	4	12	8
TTCGTAACAACGCTGG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TATCCCTTACCGCTAG	alt_4170_RC	15	10	24	13	14	6	18	10	18	9
TCGATCGCACAGATTC	alt_4170_RC	6	6	12	5	8	8	13	2	10	9
TAAGGCGTTACCCTAG	alt_4170_RC	21	36	32	22	24	34	24	27	25	28
ATTGTGATCTATTTAG	alt_4170_RC	54	56	88	48	46	59	62	74	60	57
GCAAAGGTCTGTTGCA	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
GCTGATCATGGCACAT	alt_4170_RC	31	30	17	31	34	27	23	25	35	17
TTGGCACAGGTACCGT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
ATCCAAGCGGCTGATC	alt_4170_RC	20	20	22	15	12	18	14	19	8	12
GCGCTGGGGTTTGAGG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CGTCGATATCAAGTCT	alt_4170_RC	37	42	46	35	49	25	22	30	44	25
CGAATAGGATAAACTC	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
CTCGGACTTAATAACC	alt_4170_RC	19	12	36	20	17	27	32	25	19	24
ACACAGCCATCTCCGT	alt_4170_RC	24	63	26	22	64	34	57	20	75	16
AAGTACATTTTCCCTC	alt_4170_RC	4	5	0	2	3	1	1	1	4	1
GGGGCAATGATGCCAT	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TCGTTCCATTCCAATT	alt_4170_RC	3	3	4	4	3	3	1	5	3	1
GGTCACCTACGTGTTT	alt_4170_RC	13	12	12	7	10	6	12	10	9	11
TTTGCTCAGCCGGTCT	alt_4170_RC	6	4	9	8	10	9	3	13	3	9
ACCATATCGGTCCTAC	alt_4170_RC	23	24	21	31	10	24	16	17	25	31
TTGGCTGATGGTCCGG	alt_4170_RC	11	3	9	11	7	5	12	13	4	4
CCGAAATTGATCCCTT	alt_4170_RC	3	0	6	6	2	5	0	6	2	1
TTGTCTCCCCTCAATG	alt_4170_RC	3	2	2	1	5	0	4	0	5	0
TGTCACAAGCACTATG	alt_4170_RC	0	0	0	0	0	0	0	0	0	0
TATCAGGTAGACGTGA	alt_4170_RC	49	28	58	51	45	50	44	50	45	44
TTCGGTTAGGGTTATG	alt_4170_RC	17	11	25	16	20	19	20	22	17	16
TGTTGGGATATGCAAT	alt_4170_RC	6	10	11	2	8	4	4	1	8	5
CGCAGATCGGGTACGA	alt_4170_RC	4	3	7	2	8	0	6	9	5	6
CTGTTTTATAGATCTT	alt_4170_RC	23	17	20	17	11	16	12	12	18	15
TTGCGCATGTTCCTTC	ref_1116_fdr	7	7	6	6	10	8	9	8	6	5
TTGCTACACCCCTGGG	ref_1116_fdr	19	25	21	10	19	17	11	23	20	11
TTCGTTTCAGGCCACA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTGTAACCGGTCAGGT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GGCCATGCCTCCTTAG	ref_1116_fdr	11	14	16	10	6	9	14	13	9	11
TAGTAGGTATCGTCGT	ref_1116_fdr	38	37	64	57	39	57	27	62	34	54
ATTTCCTGGTTAGCAA	ref_1116_fdr	53	36	47	57	43	47	47	43	51	41
GTGTACCCCGTGCTTT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCTAGATTGTCAT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGTTAAAGGCCCA	ref_1116_fdr	41	43	48	40	30	51	32	48	35	36
ATGTCGTTTTTCAGTC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CACCATGCCCTGAAGT	ref_1116_fdr	71	30	67	61	48	44	39	61	39	55
GTGTAGATCCTTCTAT	ref_1116_fdr	27	20	36	36	17	27	22	41	25	27
TCCGTTCCGGCGTTGT	ref_1116_fdr	27	44	37	37	45	44	49	39	56	36
TTTTTTGCGAATATTG	ref_1116_fdr	13	13	23	8	9	11	3	9	9	8
CTATCCAATGGGTAGG	ref_1116_fdr	17	17	26	25	16	28	13	15	13	18
TTCCCTAGCCAATTCT	ref_1116_fdr	12	17	21	10	11	13	12	15	14	12
TACCTGTCCTCCGGCC	ref_1116_fdr	21	8	35	23	17	29	10	30	21	29
ATTCGGAAAACCCTCC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GAATGGAGCGCATGTA	ref_1116_fdr	18	17	20	18	15	15	13	24	14	22
CTTGCCAAACACATAG	ref_1116_fdr	29	20	41	35	26	28	29	24	17	24
TGGCGAGTAGCTTTTT	ref_1116_fdr	12	18	21	15	12	15	15	16	18	7
AACGGTAATCTAGTTG	ref_1116_fdr	1	5	9	7	3	7	1	8	2	4
CCTCTTTCGATTTTCA	ref_1116_fdr	3	3	1	3	0	3	1	4	1	0
TAGCTCATTGTTCTGG	ref_1116_fdr	51	63	68	55	55	62	60	58	57	76
TTCCCTGGCTCAATGG	ref_1116_fdr	74	57	98	71	44	74	61	54	45	65
CATGCGTATGTATCGA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGTACGCATCACGGCG	ref_1116_fdr	13	12	22	25	14	20	19	25	16	13
TCCTCAACTCTTTCCA	ref_1116_fdr	11	17	6	18	11	13	10	14	8	7
GCCACTCGTGTAGGAT	ref_1116_fdr	1	0	3	1	0	1	1	0	0	0
ACATGAGTATTCGACC	ref_1116_fdr	14	13	32	22	12	14	19	24	18	18
GCTTAACTGTTGAACA	ref_1116_fdr	33	34	38	32	28	24	44	29	29	16
CAAATAAAACTACGTC	ref_1116_fdr	39	48	66	60	31	50	24	41	34	45
TTTCCGAATGCGCTTC	ref_1116_fdr	65	35	80	74	57	63	44	74	47	43
GATCGTATCAGTCGTT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CCTATCGTCTTTCGGC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTTGTTCGGCGT	ref_1116_fdr	13	8	15	10	9	10	9	4	5	5
GGTGAGTGGTCCAGGG	ref_1116_fdr	18	12	23	15	14	12	11	12	6	13
TCTGTTGTGTTGCACT	ref_1116_fdr	2	4	5	3	3	2	3	3	6	6
ATCACGCAGTTACCCT	ref_1116_fdr	7	5	13	12	9	12	7	6	11	8
TTAGTCCGGACTTGGC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGCCAGTGTGGAG	ref_1116_fdr	33	60	50	25	69	24	48	24	53	24
GGCATATAGAGGTCTC	ref_1116_fdr	87	59	85	74	49	79	40	55	46	44
TAAACGGCTGTTAGCT	ref_1116_fdr	60	59	87	95	44	72	59	70	62	68
TTATAACGCTAATTGC	ref_1116_fdr	21	15	27	23	32	24	25	17	28	15
TTTAGTATTGTGCTGC	ref_1116_fdr	84	49	107	93	68	81	78	81	72	69
TGAACCGGTCCGGTGC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTCGAGCGAAAT	ref_1116_fdr	31	26	25	27	21	22	24	18	21	28
CCCTTTTCTTTTAAGG	ref_1116_fdr	27	55	23	31	42	31	44	27	57	24
TTACGGGTTCTTAGTG	ref_1116_fdr	23	32	40	28	22	27	38	17	37	19
CGCTGTAGTGAGTGGT	ref_1116_fdr	36	30	60	48	40	36	41	35	29	33
TACCGTCTTAGACATC	ref_1116_fdr	9	13	18	20	13	8	22	13	13	11
CTCCATGTGACAGACC	ref_1116_fdr	14	11	16	20	5	9	15	24	14	17
TGCGTCATTCTACCCT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TACGAATTTTGTTGCT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGAGACCGCGCCGCTG	alt_1116_fdr	216	181	309	246	212	212	198	207	196	211
TCGGGTTTAGTGCCGT	ref_1116_fdr	41	33	45	43	24	40	36	32	41	37
AATGTCTCCCCTATAC	ref_1116_fdr	6	39	13	7	26	8	22	9	40	8
CTCGTTACTATGCTCT	ref_1116_fdr	16	17	26	11	19	17	12	6	13	12
TAAATCGGCCGAGTGG	ref_1116_fdr	16	8	26	28	17	19	13	15	21	21
GAAAAATTTCTATTAT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGTTGGACCCAGATTG	ref_1116_fdr	15	16	25	16	10	14	16	20	5	19
TCTATTCCGTATCAGT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTGTTTGAAGGAG	ref_1116_fdr	59	41	61	43	32	51	53	53	48	55
GTCACTCACAAGGTAA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGAGGTGCCCAGT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTTTCAGATCTTC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTCTTGTCTTGG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCAATCTTCTCCC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CACTCTTTATCGAGAG	ref_1116_fdr	152	128	172	165	135	140	123	155	127	135
GCGTCTTTTGTAACAA	ref_1116_fdr	34	29	59	49	19	29	26	37	38	29
CGATAGTAGTATTAGG	ref_1116_fdr	96	55	111	93	63	77	52	82	58	69
GGTCAGTTTGCGGGCA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GATGTTGCTGCTTGTA	ref_1116_fdr	7	7	12	7	5	5	6	12	6	3
ATCTTCGTGGATCCGG	ref_1116_fdr	9	6	7	10	4	10	4	6	3	5
GAGTGCTGGGACTGCC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCACGCAGTGCAT	ref_1116_fdr	11	8	21	10	5	12	8	9	23	12
TTCCAATGTCGGATCT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTACATGTTGGGAGTA	ref_1116_fdr	101	79	105	120	74	97	94	109	84	97
TAATAACGGGCAAGGG	ref_1116_fdr	375	247	490	427	244	381	263	382	270	325
CTACTCTGTGAGACAT	ref_1116_fdr	18	6	28	23	10	19	11	15	12	18
TGTCAGTAATTGGCCG	ref_1116_fdr	11	13	17	11	13	13	17	17	16	14
ATTTGCATTTGCGTGT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
AATGGTTCTATCCAGG	ref_1116_fdr	42	45	56	43	38	47	42	45	44	38
AGATATATTCTAAGAC	ref_1116_fdr	14	11	13	20	20	17	11	19	16	8
TATAGTGCGTGTTCCA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GGTAATTCGTGTAAGG	ref_1116_fdr	2	2	2	3	6	3	1	2	4	2
ATAATTTTCGAGTCAA	ref_1116_fdr	35	38	39	40	29	41	27	33	27	36
GTAAAGGTCGTGAGTA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TATTAGAATGTTTATA	ref_1116_fdr	13	10	7	12	8	14	9	9	6	8
TGTAGGAACGTTTCTC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TAGCACGGCTTTAGTT	ref_1116_fdr	78	67	100	98	50	72	58	79	71	74
AAGAGACAATCGTCTT	ref_1116_fdr	14	15	16	19	11	13	12	15	16	28
GTACAATGGGTTAATC	ref_1116_fdr	30	14	20	21	22	16	12	28	21	23
ATTTTCCAACTTGTAA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGCAAAATAACTT	ref_1116_fdr	10	9	16	14	10	13	7	10	5	13
TGGCCTATTGGTCCAA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATGTAGCAAGTAATGC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CACCTCTCGAAATTCC	ref_1116_fdr	14	9	21	12	12	12	12	18	10	14
TTTGAACGGATTAGTT	ref_1116_fdr	50	59	86	65	67	55	59	47	58	50
TGTGCTGGTTATAGCG	ref_1116_fdr	5	9	13	11	9	17	8	7	9	11
CTTACAGAGATGGTAC	ref_1116_fdr	54	46	81	73	49	60	64	76	64	63
GAAAGTGAGTCTTATT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCATGCTGGTCCC	ref_1116_fdr	39	32	61	40	38	36	46	29	36	38
TATCGTCCTTCTATGT	ref_1116_fdr	63	35	65	52	19	55	34	48	46	51
TTTTAGCCGGCCATTC	ref_1116_fdr	14	5	10	6	12	14	10	15	3	15
CGTAACTCTATTCACT	ref_1116_fdr	38	15	42	33	20	34	19	30	26	29
TTTAAAGTTATTCGTA	ref_1116_fdr	125	89	190	128	99	136	96	122	103	110
CCCGCTGTCTGTAGGT	ref_1116_fdr	9	31	8	8	21	12	16	7	23	4
TTCTCCATTTTTATTT	ref_1116_fdr	54	19	59	60	26	45	28	42	15	44
ATTTGCGCCCTGTATT	ref_1116_fdr	0	0	0	0	0	1	0	0	0	0
TTCGGCATACCGCTGC	ref_1116_fdr	45	27	54	34	31	43	35	34	28	34
GTTTGTGTTTAATTTA	ref_1116_fdr	40	29	39	21	35	33	37	30	23	35
GAAGTTGTACAGTGAA	ref_1116_fdr	20	15	25	18	6	22	27	19	17	16
GAGGGCAATCCATGAG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TATGTCTCTTTGAGCA	ref_1116_fdr	16	16	8	9	15	4	7	6	11	7
CGTTATTGTTAGGATC	ref_1116_fdr	12	10	18	15	11	18	27	17	11	8
CTGACCTCGGGTCCAG	ref_1116_fdr	43	31	45	32	23	48	32	40	32	35
TTGAGGCCCTCTCTGA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GCGCAGATCCACTATG	ref_1116_fdr	22	21	25	20	19	23	20	24	17	24
CAGTGTACCTCGGACC	ref_1116_fdr	14	7	26	17	14	25	15	14	12	15
CGCAAAAGGTTTCTTC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTCAGTTTATCCT	ref_1116_fdr	34	24	50	33	28	34	29	25	20	27
AATATATTCTTGCAGT	ref_1116_fdr	76	58	103	83	58	80	68	64	64	85
TCCGGGGCGACACCCA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTTATTAACACCG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TAACAGTTTTTCGCGA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCCTTTTCTTTTT	ref_1116_fdr	18	8	23	11	10	19	14	12	15	7
CTCGTGGTGCCCCCTA	ref_1116_fdr	10	16	12	13	15	10	3	12	6	13
TATATTCCGCTTGGGA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCTGAGGGTACG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TATCGGCCTAACGTAT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
AGCTAGGTGCGATACT	ref_1116_fdr	10	3	7	8	7	11	13	13	0	2
GTGGAGCGCAATGGGA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGCCGGTATAACC	ref_1116_fdr	47	41	56	55	34	61	32	54	33	38
AGCTCGGTTCCAACTC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GGGGCAATCCGTTGAC	ref_1116_fdr	27	13	34	34	17	26	10	34	24	31
CACGTTCGTGTGCTCG	ref_1116_fdr	38	35	62	55	42	38	41	48	27	44
CGAGCCTTTTTTTACA	ref_1116_fdr	60	42	79	73	57	75	46	67	63	69
TAGGTTTAACTCTACA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGGAATGCATTCC	ref_1116_fdr	10	8	11	12	11	8	14	12	6	13
TCAACCGAGCAATTAC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCGGGCCCTGATG	ref_1116_fdr	25	24	20	10	23	24	17	22	26	18
GGATTTACTGGTAATC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCTTTCAGCACCC	ref_1116_fdr	16	3	10	12	8	4	7	4	6	6
AACACGCCCGCAAGGT	ref_1116_fdr	4	2	13	7	8	5	5	10	7	8
CTTTGAGGAATACTAC	ref_1116_fdr	42	28	54	42	27	34	21	23	44	40
AGTACAAAATATGTTC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CTTACAAACTGGTCTT	ref_1116_fdr	39	41	62	34	37	34	38	39	33	38
TAATAAGGCTCGCCGA	ref_1116_fdr	9	10	24	17	8	15	9	12	12	11
TGGAGCAAATTTTACT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GAGACTCAGGCCGGTG	ref_1116_fdr	51	16	42	39	27	18	34	30	29	16
TATGCAATCGTCCAAC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATGCATTATCTGCTCG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CACGTGGTTTTTTATG	ref_1116_fdr	35	32	47	36	26	34	21	39	20	30
AATCAATAGAACCTTA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGTATACGTTATG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CTCAGGTTGCCGGTGC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCTTTCTCACTAC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGATATTTTTGAACTG	ref_1116_fdr	36	15	28	33	25	24	15	29	35	30
AGTCACCCGTTAGGTC	ref_1116_fdr	0	0	1	0	4	1	2	0	2	0
ACTTCGGTTATGTTCA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCTAGATCCCAACTTC	ref_1116_fdr	1	0	3	0	3	3	2	0	1	4
AAACTAACGGGACGAC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGTATTGATTGTAATC	ref_1116_fdr	19	27	32	25	25	24	26	33	28	24
CCACAATACGCGCCGA	ref_1116_fdr	11	18	14	7	25	14	23	3	31	10
TTGCCTTATCAGCGAG	ref_1116_fdr	50	37	69	58	38	47	39	46	56	49
GGTCTCATCTAGCGAG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTCTTTCCCGCAA	ref_1116_fdr	37	24	42	30	24	17	23	16	15	23
TCAAGCGCCGTTCTTG	ref_1116_fdr	94	47	101	63	68	81	58	69	51	87
GGCATTACGGGCTGTT	ref_1116_fdr	13	8	7	13	2	8	13	11	12	6
TCTATTCGCTTTATAT	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
TATCGGGCCCTGGTCC	ref_1116_fdr	39	22	44	47	23	37	28	24	19	33
TAAGTTCCGATATCTG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCCAATAACGGTA	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
CCCATCCGGTACGTAG	ref_1116_fdr	42	40	61	51	39	34	37	44	37	35
TTAAGGATAACAGTGG	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTATTCACTTTGC	ref_1116_fdr	0	0	0	0	0	0	0	0	0	0
GCACTTTCGGCATACG	alt_1116_fdr	54	41	68	65	44	51	67	42	46	45
TAATTTGAAATTCTGC	ref_1116_fdr	42	34	60	81	43	57	45	57	30	41
CGACCCGGGCCGTCAA	ref_1116_fdr	2	3	4	1	3	2	3	0	5	4
TACTTGTCCCTGCTTG	ref_1116_fdr	60	42	56	51	34	37	35	41	35	33
TACAATGGCCTCCTGT	ref_1116_fdr	70	49	82	66	51	68	31	60	36	49
TTATTTAGCGATGAGG	ref_1116_fdr	21	29	39	45	20	41	19	36	23	42
TTACGACATGGCTATG	alt_5781_new	30	34	27	30	28	30	34	25	27	18
TGGCCGACTGGTACAT	alt_5781_new	9	15	8	9	15	3	10	3	16	7
CGAGATGGAGCGTGGC	alt_5781_new	43	28	25	22	21	27	36	30	45	24
TAGGGGCTTAAGAGTC	alt_5781_new	1	2	1	0	5	4	5	1	8	6
TAACTTCTAGTTTGCG	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CAAGTAATGCGTCTTT	alt_5781_new	10	19	20	6	23	9	20	5	8	9
TCCGCTCAATGGCTTG	alt_5781_new	13	19	12	5	7	11	11	12	12	6
CTCCTAAGCGTATTCG	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CTTGGTTCAATTGTTG	alt_5781_new	0	0	0	0	0	0	0	0	0	0
TCGCTAGCTCCAGAAC	alt_5781_new	6	15	15	7	17	11	19	5	13	8
CCGTTTCTACTGTGTT	alt_5781_new	6	11	7	4	22	0	5	6	20	2
GTGTTTCTCTGTCAAA	alt_5781_new	2	10	2	1	7	7	4	5	8	5
TGGACGAATACGTTAC	alt_5781_new	7	16	16	11	14	12	17	5	23	9
TTTCCCGCGCCTAGGC	alt_5781_new	2	2	2	2	3	1	5	1	1	6
AGAGTTTATACGCGCT	alt_5781_new	4	2	9	5	7	6	6	5	8	3
TCGATGTGATGTACGC	alt_5781_new	17	38	29	19	19	25	30	13	29	23
AACTTCATCTTCAATG	alt_5781_new	17	25	20	26	25	21	23	17	25	18
TTTGATAGCGTCCAGA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CCTTATGCTCTTGTTA	alt_5781_new	15	7	13	8	11	5	12	5	3	7
CCTTAGCTCTCCCATA	alt_5781_new	23	30	21	11	28	13	28	19	25	12
TAAATCTTAGTCTTAT	alt_5781_new	71	107	105	63	103	77	113	64	118	68
GTCGGTGAGAACGTTC	alt_5781_new	60	60	87	56	51	43	73	51	84	34
CAAGTTTTTTATCCTT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CTCTCCATCTGGTTCG	alt_5781_new	0	0	0	0	0	0	0	0	0	0
AGCTGGAGATACCAAC	alt_5781_new	22	21	20	7	29	14	31	15	36	12
TATCTCGTAATTTCCT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GTCCTTTTTCAGGGGA	alt_5781_new	9	7	19	6	3	15	18	2	11	6
TTCGTTTCTGCCCGGA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
ATTTCGGTTCGCGGTG	alt_5781_new	30	22	27	31	33	25	40	34	29	29
CCAGGATTCTTGCATT	alt_5781_new	5	4	4	7	4	3	1	7	10	3
CTTGCATTCGGGTTTC	alt_5781_new	13	7	18	12	7	11	10	14	9	11
TGCAGTTTACCTATGG	alt_5781_new	31	30	40	30	29	25	32	25	41	27
GGGTAATGATCACTGC	alt_5781_new	54	49	54	38	59	45	53	46	61	54
AGCACCGACCTTGATG	alt_5781_new	0	0	0	0	0	0	1	0	1	0
CCGAGCGCTATTTTCC	alt_5781_new	38	44	65	43	58	51	68	36	84	36
CGAACAGCCCTAACTT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GTAACAACTAGCTATT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
AGTTTTGACGCTAAGT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
AGTTTACTTGTATCAC	alt_5781_new	0	0	0	0	0	0	0	0	0	0
ATATTTGTCTAGTTGC	alt_5781_new	45	41	55	42	45	37	38	53	49	36
ATCTGGATGTTAGATT	alt_5781_new	8	2	7	4	3	6	7	10	9	0
ATCGATTTACTACGGC	alt_5781_new	22	27	26	21	30	22	21	21	22	17
GACTCTTTTGGATAGT	alt_5781_new	12	20	24	20	24	13	19	5	19	11
AATGTTGGGTCTGGGC	alt_5781_new	12	16	19	23	20	17	17	10	23	15
TTGGTCGTTATTGCCA	alt_5781_new	8	9	3	5	6	15	9	6	9	5
TGTCACGTTCGTTGTG	alt_5781_new	15	30	29	15	24	19	28	16	45	10
GTTCGTACCCTGCCCG	alt_5781_new	39	38	34	30	38	26	41	45	43	29
GTGTCTAATTGGAGTT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CTTAGCTCGTCTCGTT	alt_5781_new	18	29	23	26	31	31	21	24	46	14
AGTCCTTGTTAAAACC	alt_5781_new	0	0	0	0	0	0	0	0	0	0
AGTGCATTTTATTTGG	alt_5781_new	0	0	0	0	0	0	0	0	0	0
AGGTATTTCATCTGGC	alt_5781_new	3	11	7	5	10	11	12	7	19	9
CGTTCGCCATATTTAG	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GTATTTCGTTTTGGCC	alt_5781_new	15	27	24	19	24	6	18	18	13	22
ATTCTGGGAAAGATCT	alt_5781_new	17	26	34	12	22	14	24	14	25	10
CGTGGTCCTTTCAAGA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CTTCTCTAGCCGTTCG	alt_5781_new	40	37	22	34	30	27	44	30	31	25
GTCAGTCGCATGATGC	alt_5781_new	12	21	19	18	10	15	22	7	15	7
ATTTTTTACAGGCCGA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CTTCAGGAGTTCGGCC	alt_5781_new	7	5	11	6	10	8	11	9	11	9
TCTCGAGACAGTTGGT	alt_5781_new	12	14	15	14	9	14	14	16	22	12
GATAACTCTCTTCTCG	alt_5781_new	13	14	12	8	21	17	16	10	9	11
CAATTCGCTTTATCAT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CAGTTAAGTACCACCG	alt_5781_new	43	88	95	48	105	53	85	45	102	44
TTGCTATTAACGTCGG	alt_5781_new	4	3	2	5	2	4	6	2	2	4
TCTCATCATAGAGGTA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GTATAAAGAATCCTTA	alt_5781_new	3	10	9	13	10	5	8	13	6	6
CCTTCTTTTTAGTGTT	alt_5781_new	1	4	6	4	1	5	5	3	1	2
TATTTTGTATCAATGC	alt_5781_new	11	15	23	15	12	10	20	13	20	9
AATTTTGCGTGTTGGC	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GACAAGGCCGGAAGCC	alt_5781_new	9	7	7	6	2	6	7	3	8	4
GCCCTGGTTTTGGCCA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
ATACCTTTTCTTATGC	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CTTACCGTACCGCCGG	alt_5781_new	1	6	4	6	11	4	6	6	8	2
ATCCGTTCCGTCTCGG	alt_5781_new	0	0	0	0	0	0	0	0	0	0
TACTCTCCACATTTTG	alt_5781_new	0	7	3	5	4	3	8	1	12	8
CTGGATTCCGCAACTT	alt_5781_new	36	56	48	44	34	40	47	39	49	28
ACTTATACAAAATAAA	alt_5781_new	3	8	10	6	6	3	15	4	7	6
GTGCTAGTGGTTCCGT	alt_5781_new	26	33	48	27	29	34	25	21	36	28
CCCCGCGTGTCTTTTC	alt_5781_new	21	33	20	15	32	19	26	17	36	15
ATTTAGAATTATTCGA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
CCGTTTAATGACGCGA	alt_5781_new	42	34	55	40	36	45	44	38	44	39
GACAATCGACAAGGTC	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GTTTACGTAGCTTACA	alt_5781_new	10	10	10	8	9	3	18	3	7	6
TTCTTTGTGGAGAACT	alt_5781_new	74	126	109	92	126	91	153	84	141	79
GTATGTGCGCCCTTTT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GACATTGTCAGACCGG	alt_5781_new	32	38	40	27	29	31	30	24	46	34
CATCGCGGCTTTACAT	alt_5781_new	0	0	0	0	0	0	0	0	0	0
GTGGTATCACCGCCTA	alt_5781_new	129	171	125	118	157	100	176	116	167	105
TGGTCTATCAACAGTA	alt_5781_new	0	0	0	0	0	0	0	0	0	0
TCGGAAGGTTGACATT	alt_5781_new	32	33	35	24	24	29	36	24	45	31
TTGCATGGCATATCCG	alt_5781_new	23	26	14	19	23	18	17	8	33	11
ATTAGCTTTAGTTGCG	alt_5781_new	3	2	1	1	0	3	1	2	0	0
TCAGCGCGGATTAACT	alt_5781_new	21	25	19	16	17	17	34	15	25	17
CACCTTCTGCCTCCGT	alt_5781_new	13	4	8	2	5	9	8	3	8	4
CGGTTGGTTTACCGGG	alt_5781_new	38	36	39	53	38	37	53	40	39	28
GCATGATCTGGCGATG	alt_5781_new	20	20	15	12	21	16	20	21	21	6
TCTAACTTCGGTTATT	alt_5781_new	13	12	19	4	15	12	9	8	10	5
ATCCGGTTCATGGCCG	alt_5781_new	54	67	61	50	63	45	77	57	68	35
CATATTAAACTTTCAA	alt_5781_new	233	225	260	215	196	182	251	230	234	178
TTTATGAGGGCTTCTT	alt_5781_new	44	36	60	58	42	30	34	45	25	29
GGGTTAGTTGCGCTAA	alt_5781_new	27	26	26	20	24	24	29	13	29	23
TACCAGCGTATCCAGT	alt_5781_new	45	94	59	52	57	43	72	40	67	56
CAGCTAAAACGGGGGT	alt_5781_new	34	55	34	35	72	33	46	27	53	16
TGCTCGCGACTTTATA	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCACTCGTTCGAC	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
GCAGCCCATCTCGTAA	alt_1246_reverse	20	23	20	19	35	12	28	13	19	15
AATCCGAGCTCTGCTC	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTGAGGTAATGGA	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
ACATAGATTGGCACTT	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
CATTTTTAGCACGTCT	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
CTACAATCTTCTTTAG	alt_1246_reverse	67	80	90	72	116	57	91	90	107	78
AATCTATAGCCCGACT	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
AATTGACATCAATATG	alt_1246_reverse	98	93	105	91	108	92	130	106	93	91
TACTTGTGGTAGTTCT	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
AGTATAAAGGCTGGAG	alt_1246_reverse	49	55	56	49	62	54	63	56	68	33
CCCCGGACACCATTTC	alt_1246_reverse	5	48	9	5	45	8	47	6	43	8
ATTGCCGTCGCTTTCT	alt_1246_reverse	15	18	19	23	22	14	16	18	12	11
TCTTCCGGATTTTCTT	alt_1246_reverse	6	4	6	5	13	2	18	11	8	9
TCCTGGCCATTTGAAT	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGCTTGAGGTTTC	alt_1246_reverse	29	27	33	23	37	33	29	22	30	24
AAATCATGGCATGTTT	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGTCCGTGGCATA	alt_1246_reverse	59	63	81	53	63	65	67	51	73	53
TCAATTGGCGCAGAGT	alt_1246_reverse	12	17	9	16	19	15	25	14	16	6
TGCCCTCAAGATGTGG	alt_1246_reverse	0	3	5	2	5	2	3	1	8	4
TCCCGCGCCTGCTAAG	alt_1246_reverse	22	20	36	18	23	22	29	19	21	16
TTAGCAGTCCTTCCAT	alt_1246_reverse	32	45	42	26	44	39	53	31	58	23
TCCATTCGGGGCCTGG	alt_1246_reverse	19	12	23	16	15	25	25	19	19	9
TTGTTCACTAGGTGCA	alt_1246_reverse	19	28	19	14	31	23	24	24	25	23
CAGATTCAACCCCCGC	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
TCACTCGATCGAGTGG	alt_1246_reverse	1	6	1	2	1	1	3	0	4	4
AGAACGGTATTCCCTA	alt_1246_reverse	48	35	37	33	32	32	49	54	46	32
GGTTTAACAGGTTATT	alt_1246_reverse	34	29	29	32	32	38	42	28	33	24
CTCTGGGCAGCACATA	alt_1246_reverse	70	73	90	66	82	58	97	71	87	60
TAAGACGCTCGCCTTC	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
TGTTAGTGTAGGTTAC	alt_1246_reverse	8	19	34	23	27	20	18	14	21	11
TTTTCCGTAAAGAACA	alt_1246_reverse	290	372	363	331	306	334	344	307	333	294
GTCTTGGGACATCGAT	alt_1246_reverse	18	27	25	23	22	22	11	21	32	17
ACCTCGCTAATTTTCT	alt_1246_reverse	262	218	335	281	241	247	248	271	288	268
GGGCGTCCACCAAAGG	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGTTCGTCGCTAT	alt_1246_reverse	4	8	3	9	3	7	4	5	8	10
CTGCTAAACCATAGAA	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
GTGTATTGGCTTGGGC	alt_1246_reverse	39	33	45	28	47	30	47	25	53	31
TTCCAGTCCTTGTCTA	alt_1246_reverse	28	54	47	49	56	31	53	53	52	25
TTCTCAAGTTTTCTTT	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
GATCGGCCTGCTCTTA	alt_1246_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTGGCTCATTATA	alt_1246_reverse	18	15	7	9	10	9	13	15	19	12
ACCGTAACACCGGACG	alt_1246_reverse	17	15	34	18	36	26	30	15	25	10
TGAAATACGATAAACT	alt_1246_reverse	21	34	44	26	27	28	24	28	28	24
AGCTTTGCGACTGGGT	alt_1246_reverse	18	51	16	17	34	11	36	17	31	20
TCTGTAGCCTCTTTCC	alt_1246_reverse	0	0	0	0	3	0	4	0	0	1
CATCTCGTAACCGGCA	alt_1246_reverse	39	41	47	40	47	43	27	40	49	26
GCATTACCTATTCGTA	alt_1246_reverse	7	11	12	14	9	7	7	6	13	11
ACATTGCGTCCGTTCA	alt_1246_reverse	23	34	26	28	41	22	27	19	29	27
TTCTATAGCCCCGTAC	alt_1246_reverse	47	35	50	22	31	36	35	27	22	30
ACCTTTATTCTTGTAA	alt_1246_reverse	20	12	15	19	17	9	11	16	11	9
TGGTGCTGTGAATTAT	alt_1246_reverse	30	43	39	32	26	32	35	24	51	20
TTGTAAGTCTGACCCT	alt_1246_reverse	21	38	24	17	22	20	20	17	30	19
TGCCTGAGAGTCCGAG	alt_1246_reverse	3	5	3	5	6	6	6	6	8	3
GGGGTTTCGATTCATA	alt_2134_fdr	21	9	39	37	14	29	20	29	14	42
TTGAATTTTTGACATA	alt_2134_fdr	9	10	14	14	5	10	9	7	13	9
ATGGTTCACGCTTTCT	alt_2134_fdr	11	10	23	14	5	12	12	19	7	10
TCGTATATATTACACT	alt_2134_fdr	5	1	19	9	2	6	2	11	2	7
TTCACGGTGGTGTAGA	alt_2134_fdr	60	21	93	66	28	67	30	35	37	43
TCTTCCTCCATCTTCT	alt_2134_fdr	21	11	27	16	3	19	8	18	11	22
GCAAGCCATACACTCC	alt_2134_fdr	13	16	11	6	23	9	15	16	16	12
CCCCCAACTCGCACTA	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCCCTCGTCATAG	alt_2134_fdr	63	44	70	65	41	62	42	68	35	48
GTCTCATCGAAGTCCC	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGGTTACAGAATC	alt_2134_fdr	94	40	119	101	45	91	39	97	44	70
CCACTTTTGACAAGGG	alt_2134_fdr	12	7	19	15	9	9	6	10	7	13
CAAGTAGCAGTGTTCG	alt_2134_fdr	187	78	212	225	87	198	99	191	114	152
AGATGGTCAGCGTTTG	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGCTTGAAGTTCA	alt_2134_fdr	97	48	104	111	43	79	43	101	44	86
TTCACAACAAGCACCG	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTCCTCGCGTAA	alt_2134_fdr	35	21	55	50	27	32	29	40	31	47
CTTAGGACAAAGCAAA	alt_2134_fdr	17	7	15	16	4	16	6	12	5	12
GGTTCTACTTAGCACG	alt_2134_fdr	30	18	46	25	17	17	19	25	16	12
GTTTCTCAGGTTTAAT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCATGGCGGCCTT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
TTGCACCTCCGGATTT	alt_2134_fdr	20	7	27	17	7	13	8	12	8	29
TCATTTATTTATTGCA	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
GAGTGAAGGCGATCCC	alt_2134_fdr	50	33	69	55	19	57	26	61	29	68
TCGCAGACCAATCTGT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTACCACTATTCT	alt_2134_fdr	86	49	117	102	40	68	46	100	61	68
ATTCGGTATAACTGGG	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCCATTCGCCACT	alt_2134_fdr	7	5	8	7	2	10	3	10	8	4
TTCTGCTCTCGCCCCC	alt_2134_fdr	59	21	64	62	34	45	27	47	24	48
GGTTCGGAAGCTAGCG	alt_2134_fdr	17	6	18	15	4	11	5	18	10	19
CGCGGTCTACGGTATT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
GGTAAATCAGGCCCTG	alt_2134_fdr	246	98	302	288	105	216	91	234	120	201
GGAGAATGAGTGCTGT	ref_2134_fdr	49	15	42	48	20	42	23	33	20	40
TAGCCTTGCTACGGTA	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
CTACTGTGCCAAGAAG	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
GGATATTTAGGCCCTG	alt_2134_fdr	178	84	266	203	88	170	85	205	87	177
ACCCAAGATGCCCAAT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGCGAGCTGTGA	alt_2134_fdr	121	59	199	155	77	144	73	128	69	105
TTTCCTGTTTCAGAGC	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
TTACTGCGGCCCCGCG	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
CGAGGATCTTTCTCTC	alt_2134_fdr	43	25	61	72	30	52	30	60	33	40
GCTCGTGTGGGTCTGT	alt_2134_fdr	325	159	329	315	166	271	157	265	171	261
GGAAGCTGGGAGCGGC	alt_2134_fdr	130	63	145	156	42	121	51	132	57	122
AGAAACTGCTTGTGTG	alt_2134_fdr	123	68	175	150	67	150	83	115	70	131
TCTATATCTCTTGTCT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTTTATGTGTTTG	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
CGAATTCTAATTACCG	alt_2134_fdr	96	37	105	101	42	86	49	87	54	96
GTGCACTATTCCGTTT	alt_2134_fdr	39	22	34	31	20	21	7	22	18	28
ATAGTTATGTTAGACG	alt_2134_fdr	41	22	61	49	18	42	22	40	23	32
GTGAAGTGTGACTAAT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
TTAATTTGGATTCCCC	alt_2134_fdr	121	161	166	141	136	132	160	154	142	106
GCGACGCACATATCCT	alt_2134_fdr	58	15	65	72	32	51	31	56	24	41
AAGGAGACTTGCCCAT	alt_2134_fdr	13	14	10	25	17	20	17	22	14	8
GAGCTCGAAGTAGTCT	alt_2134_fdr	88	38	112	99	29	97	45	87	39	84
GTTTTAACCCGCTCAC	alt_2134_fdr	39	20	34	31	19	26	15	24	17	29
GTATCTTAATGGACCT	alt_2134_fdr	40	13	39	39	23	31	26	41	21	33
GGCCTCCGGTACATAC	ref_2134_fdr	26	20	32	31	24	26	25	27	38	30
CACAACTCCTTATTGG	alt_2134_fdr	58	40	92	100	64	84	34	79	43	64
ACCCCTTATGAATTGA	alt_2134_fdr	52	58	68	66	56	63	44	39	56	57
ACACTACGATGTGCTC	alt_2134_fdr	25	14	28	23	9	28	4	14	12	24
GGGGGTCCGCCCCCTT	alt_2134_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTGGATTGTACTA	alt_2134_fdr	19	8	17	25	13	23	10	14	18	16
GCCCAATGCACTTTAT	alt_2134_fdr	8	4	15	10	5	13	6	10	4	7
CAAACCTTTGGCTCGC	alt_2134_fdr	31	22	44	31	23	44	17	34	23	29
CTTGTATCACGGCCAG	ref_5336_fdr	75	32	87	79	27	71	30	79	38	84
GAACTATTCGGATCCG	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
AGCGGGCTTCCCTGCT	ref_5336_fdr	132	68	139	131	84	101	71	106	64	113
GCGTGCTATTGAATTC	ref_5336_fdr	533	187	675	443	207	481	214	457	232	435
ACTAAAGCCGTATCTC	ref_5336_fdr	277	95	322	240	91	230	90	209	115	205
TCGCCCTATATGACTT	ref_5336_fdr	76	17	90	68	21	54	32	49	19	60
GTTCGGTCAGTTAATA	ref_5336_fdr	23	11	25	19	12	25	8	12	9	27
CACTCACCGTTTGCAC	ref_5336_fdr	1	8	7	7	3	6	14	6	9	7
ATTAACCACCATACGA	ref_5336_fdr	637	206	743	530	239	538	252	532	290	560
TGAGGACTCTAAAAAT	ref_5336_fdr	22	23	35	26	21	29	10	25	26	33
CCGCACATGCGCCGAC	ref_5336_fdr	144	50	187	109	46	134	42	135	53	158
CGACTGTCTTTGCAAA	ref_5336_fdr	134	144	153	127	123	128	130	132	125	113
CATGAGCCTTTAGTTT	ref_5336_fdr	10	11	13	17	13	13	14	12	14	14
ATGGGCCCTACCTTAA	ref_5336_fdr	207	73	209	144	61	151	52	158	93	158
GGATTTACTTATTTAC	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAATGTTCTTTTA	ref_5336_fdr	39	21	64	52	20	58	34	52	26	45
GTACCATAGCTTATTC	ref_5336_fdr	12	4	13	4	5	10	2	7	1	12
GTACAGTATTGGACGT	ref_5336_fdr	71	14	77	43	22	54	21	41	19	39
CTTATCCTAAGGCAAA	ref_5336_fdr	61	33	70	44	27	61	18	52	22	45
GTGAGACTCTGAAGCA	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
AGCCATTTAATCTTGC	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGTCCTTGTCTAT	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
ACTCAACTTTCATGTT	ref_5336_fdr	197	100	227	172	58	148	62	170	72	209
TCTCCGGATGGCAGTC	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
AATCTCGCACAATGCA	ref_5336_fdr	2	2	19	15	9	11	2	15	13	18
GTGCAGAACCTCTCCG	ref_5336_fdr	212	94	255	176	96	195	118	181	96	174
TCGGAATGGTTAAGTC	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
GATTTACTCACGCCGG	ref_5336_fdr	103	33	114	76	43	78	35	92	33	88
CTGTTTGCTTAAAGCG	ref_5336_fdr	34	33	39	35	32	50	22	38	28	48
TAGTATGCCGCTTTTA	ref_5336_fdr	216	94	265	166	79	221	98	170	110	194
ACGCAAGCGTTGCCAT	ref_5336_fdr	183	64	210	144	55	167	81	151	81	152
TGGATGTACAAATTAC	ref_5336_fdr	249	80	333	211	68	231	110	205	96	253
TTTCCTACCTCCCTAT	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
GCGTAGCCATCCACGC	ref_5336_fdr	59	22	62	50	19	59	35	64	24	52
CGGATGCAACACGGTT	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
AAAGGGCCTCGGACAC	ref_5336_fdr	112	105	132	131	97	131	102	125	108	110
GCCGGTGGGCTAGCGA	ref_5336_fdr	38	9	47	37	20	34	19	30	8	33
ACCCCCTTATTCACTT	ref_5336_fdr	139	50	146	109	49	125	59	143	52	149
CGCCTGCCTATCTCTT	ref_5336_fdr	91	39	122	59	38	76	36	76	45	88
GTTGGAGGGGCACTCG	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGCCGTACGCTAA	ref_5336_fdr	21	23	44	15	28	33	20	40	19	21
TGCCCGTCGCACTAAT	ref_5336_fdr	54	35	49	37	32	50	28	43	22	47
CCTCTGAGACACCCCC	ref_5336_fdr	121	44	144	100	41	132	47	98	42	68
CAGATAGTCCCAACTA	ref_5336_fdr	173	58	231	170	71	166	78	158	78	162
CCCGTTACCTTATGGT	ref_5336_fdr	34	6	33	24	10	22	10	21	11	21
CTCTGTTTCCCGGTTT	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGTTCATCCTTTG	ref_5336_fdr	20	20	38	18	11	27	18	25	14	28
GCACAACGTTTGACTT	ref_5336_fdr	76	25	95	58	21	73	24	64	34	64
CAATTTCTTTGACATA	alt_5336_fdr	254	124	273	153	143	182	112	196	136	187
TTGAGGTCTTTTGACG	ref_5336_fdr	60	20	54	37	18	54	18	51	38	43
AAGGAGCTTGTAAAGG	ref_5336_fdr	213	70	245	171	84	201	78	199	105	208
GATGAATAGTGCTCTC	ref_5336_fdr	15	4	19	21	10	18	10	15	0	8
CACGCTCGCGGCGACA	ref_5336_fdr	54	44	49	39	51	62	56	36	29	54
GACCGATACGGGACCC	ref_5336_fdr	234	82	284	183	84	201	87	182	74	183
GTTGGAGGGGCACTGG	ref_5336_fdr	37	14	37	24	11	29	15	45	8	42
TTTCTACTCTTCACAG	ref_5336_fdr	36	10	26	25	12	30	13	26	16	33
CGACGACTCTTGGCTA	ref_5336_fdr	33	17	30	38	14	24	17	25	22	19
TTCCATTTTGTTCTTT	ref_5336_fdr	42	14	30	28	11	33	20	36	8	31
CCTAGGGTATTTCGGC	ref_5336_fdr	149	75	186	144	102	169	104	157	89	140
GCGTTTTGTCCCCCCC	ref_5336_fdr	167	55	183	126	47	145	61	127	69	120
TGGTGCTCTGCTCTAT	alt_5336_fdr	242	88	272	203	93	195	89	249	75	228
AAGCAACTATATCCGT	ref_5336_fdr	81	26	91	68	22	70	25	59	39	87
TCTTAAGGGCAATGAC	ref_5336_fdr	73	16	59	56	29	59	27	36	33	48
ATCTTAACTTCTGCAC	alt_5336_fdr	148	69	152	138	45	170	53	148	53	117
CTCTCGGCGTCATTTA	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
GTATAAGATTTGGACA	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
GGTTAATTTGTCCTCT	ref_5336_fdr	218	62	289	201	70	206	68	190	82	204
TGGCAATAGGAATATG	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
CCAGATCGTCTGAATA	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
TCACTTATTGCAAATC	ref_5336_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTTACGAATACTG	alt_4201_fdr	26	20	31	23	23	28	49	21	31	16
CTACGGAAGTAGAGTT	alt_4201_fdr	9	12	12	13	19	9	18	15	24	9
CATGAATCGTCATTGG	alt_4201_fdr	156	193	218	175	212	178	191	161	197	179
CGAGTTCGGATGAGCC	alt_4201_fdr	25	30	31	15	22	7	20	10	25	14
CCTCCCCTATGTTGCG	alt_4201_fdr	36	192	39	38	191	41	202	41	229	43
CGGGGGCTTTGGGTGA	alt_4201_fdr	37	69	51	45	40	33	53	36	72	33
GAATTCCCATTTTAGT	alt_4201_fdr	50	62	66	55	59	51	58	47	65	46
TAGGTATAAGACGGAA	alt_4201_fdr	28	45	39	29	38	24	31	26	31	21
GGCCAAGACACAATTC	alt_4201_fdr	11	11	10	11	11	5	3	8	7	8
GTATCCGTTCGTCTTT	alt_4201_fdr	49	69	66	47	69	47	62	48	68	49
CTAATAGGATGGGGAT	alt_4201_fdr	31	26	35	25	34	16	28	19	27	28
CCTCCTGAAGTACGAG	alt_4201_fdr	67	86	83	68	78	72	74	68	76	68
CAGAATCTTAATTTTG	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGGCTTTATCTTG	alt_4201_fdr	5	22	8	7	10	13	8	10	17	11
GTCCGTAGGATTATCT	alt_4201_fdr	6	9	6	0	3	2	5	4	4	4
CTCTGAATCAAGCAGG	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
TCACATTTTCGTAATT	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
GCATGGCGATCAACGT	alt_4201_fdr	61	75	75	59	73	72	100	83	84	65
CCATTAAATCTACGAT	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
TTGAAAGGTCTAACTG	alt_4201_fdr	89	159	148	104	150	111	165	109	160	113
TCAGTTTGTAGTATAG	alt_4201_fdr	48	62	57	50	47	52	64	50	70	40
GCTGATGGGGCTTCAA	alt_4201_fdr	46	48	52	52	44	31	49	40	54	35
TATGATTGATACCGTC	alt_4201_fdr	10	12	18	3	17	16	23	11	16	16
ATGACAGATGACTTCT	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGCGGCACTTTAT	alt_4201_fdr	6	7	8	3	4	13	9	5	2	3
GGCACCCCTAGTGAGG	alt_4201_fdr	22	31	33	15	32	20	31	24	39	13
TAAAGTCCCCTCAGAA	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCACCCTACTTGG	alt_4201_fdr	9	4	4	9	7	7	12	9	15	12
TCCGTGTAGACGACGC	alt_4201_fdr	24	28	38	44	38	28	40	30	41	29
TGTACTGAACAAAGGC	alt_4201_fdr	49	37	47	32	36	34	65	41	44	29
CTTATGCGCGCCGAGT	alt_4201_fdr	33	48	52	38	48	47	55	29	55	39
TTCACTTTCAGCCCCC	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
TTACTCTCGTCTTTGT	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
GTAATGTCCCTAGATC	alt_4201_fdr	16	13	25	18	22	15	28	17	24	16
TCCACACTTTCCGTTA	alt_4201_fdr	20	28	18	17	23	18	35	22	17	22
ACCCGCTCGCTGTAGG	alt_4201_fdr	21	38	38	30	41	36	55	25	41	28
TTCTTGCAAGCAGATG	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCGTCTTCCCTGA	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCAGGGGCACAAA	alt_4201_fdr	25	34	38	28	37	20	24	21	28	20
CTAGGCTCTTCGCTAT	alt_4201_fdr	23	44	34	47	50	33	46	20	49	36
GGTTATTATGGGGTCC	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGAACTGCTAAAA	alt_4201_fdr	20	27	29	36	32	25	40	22	38	26
GAATCGATGATTAACT	alt_4201_fdr	13	16	16	16	15	15	16	11	15	14
ATATGTCCCAACCTCG	alt_4201_fdr	27	35	36	19	22	24	17	23	28	28
TTTCTCGTGGATGTTG	alt_4201_fdr	13	15	11	16	12	15	12	7	20	9
GCCTGATTAAGTAGCC	alt_4201_fdr	29	43	25	32	35	37	53	24	46	25
CACGCCCCACTCTGCA	ref_4201_fdr	25	50	34	29	51	25	71	25	61	30
TTTACGGATTGCAGTT	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
TCGAGAAGCTGATTAG	alt_4201_fdr	0	0	0	0	0	0	0	0	0	0
CATTCGTTTTCAACGA	alt_4201_fdr	20	14	19	18	18	12	28	11	29	16
GTTCTTGGAATAGTTT	alt_4201_fdr	38	37	51	29	58	35	61	36	72	26
TTTGTCTTCTGGTTGA	alt_4201_fdr	74	92	105	69	97	81	118	75	88	94
GGAATGCTTTTCAGGC	alt_4201_fdr	93	81	81	82	105	109	76	80	106	72
GGTCGGCTCTGTGGGC	alt_4201_fdr	9	13	8	6	11	9	12	11	8	10
CGCGCTCTGCCGAATC	alt_3143_upstream	15	7	17	5	14	23	11	13	9	10
TGGCATTTGCATGCAA	alt_3143_upstream	28	46	31	42	31	48	53	36	34	40
TATCCCGCTGGGTCCC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
ATATGCAGCCGGCCGA	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TATAGGTGGTTTCCTG	alt_3143_upstream	16	15	18	12	8	15	14	13	9	5
AGTTATTATTACGGAT	alt_3143_upstream	80	65	102	80	64	103	66	82	81	69
TATCTGGTCACCTTTG	alt_3143_upstream	29	28	34	31	29	25	26	26	24	26
GACAGCACGTATTTCC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GCCACATTTATGCATA	alt_3143_upstream	81	83	124	107	82	98	92	104	72	74
CCATGGCGGAAAACTC	alt_3143_upstream	22	10	29	17	13	24	14	14	14	22
GCTCAAGAGTAGACTT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCCAAGTCTATCCAAC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCGGGACATACCC	alt_3143_upstream	63	50	82	67	42	54	43	55	67	52
GCTACCAAGGCTGCGT	alt_3143_upstream	96	92	96	100	81	74	80	76	81	70
CCATCTTACTGGTGCA	alt_3143_upstream	36	43	39	56	29	34	48	37	34	38
TATCTTTCATCTCGTG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GATCACTCGTCTAACC	alt_3143_upstream	5	10	5	6	8	11	3	6	5	4
AATGGTTCTTAATGCC	alt_3143_upstream	21	28	19	19	18	17	16	6	14	20
TATTTGGTGTTTTTTC	alt_3143_upstream	16	19	15	23	13	14	16	13	8	10
CCGCATGTTCCCTTTT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTAGTACCCTCCT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CATCTTCCGCGATTTG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GGGATCTCGGGTGGCT	alt_3143_upstream	37	37	45	29	29	37	19	37	38	31
CCTATGTACCTAATTC	alt_3143_upstream	157	133	202	148	165	147	161	133	120	142
TACTAAAGGGCTTAGG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGCGCTCTGTAGT	alt_3143_upstream	136	95	126	115	89	120	116	135	114	77
CCTTTGCGTCACTTTC	alt_3143_upstream	61	41	49	57	48	42	35	52	41	38
CGTTGAGTACTGTACC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GTTAAGTTGTGCAGGT	alt_3143_upstream	86	84	103	95	96	92	90	92	101	89
CCCCAACGTAAGACCT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GATATTGGGATCCGGT	alt_3143_upstream	31	28	37	42	33	39	28	44	37	31
CTGCTATAGGGAAAAC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
ATCGATACTGTTATCG	alt_3143_upstream	135	109	169	150	90	134	104	111	115	137
CTCTTGCATTACGGCT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGGTTCGCCTATG	alt_3143_upstream	53	59	75	51	48	61	44	42	60	65
GGTCTTATGGCATACC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GGGACCAGTCCTGGGA	alt_3143_upstream	137	94	159	168	115	118	119	155	93	139
TACCGGGCGGTTAGCT	alt_3143_upstream	17	13	38	24	15	36	9	27	13	25
TGGCGCCTCGATCCCC	alt_3143_upstream	129	73	187	148	75	123	68	115	74	89
AAGAGTGTGACCAGGT	alt_3143_upstream	12	16	15	23	13	10	16	15	9	24
CTTGGGCACTGTTTCG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGACTACATGGCC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGCTGGTTGTGCG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCTCACCTAGGGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TACCTCGGTCGTGGTC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTAACCTGCGTGT	alt_3143_upstream	62	45	77	66	35	66	42	41	38	38
ACGGTACTTGATATCT	alt_3143_upstream	4	4	9	5	2	6	3	11	1	5
AGTTCGTAATAGATCT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCTTTTTATATTC	alt_3143_upstream	42	35	60	69	35	52	32	40	45	46
TTTAAATATTTCCCAC	ref_3143_upstream	5	5	11	13	3	8	4	7	7	7
CGTTAAATACAATTGG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGTCTCGATAGGG	alt_3143_upstream	40	39	63	55	38	44	34	32	33	36
ATGGAGACCTCCCCAT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCATGGATTGTAC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCGAGAGTCGAGA	alt_3143_upstream	8	2	9	0	1	3	0	3	5	1
CAAAGTTGCGTTCTGC	alt_3143_upstream	59	41	53	62	41	63	39	56	41	38
CTGGATGGTCTTCGTG	alt_3143_upstream	134	133	206	155	143	145	161	147	124	126
TGATGGAATTGGTTCT	alt_3143_upstream	0	1	1	0	3	1	1	0	1	1
GGCCTACTTTCGCGCA	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
AGAGAAACGGTCCCAT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
AATTAAATGTCTCTGG	alt_3143_upstream	85	49	75	80	62	72	74	67	53	64
CCTTGGCTGCGTATGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCTGGTATGTGGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TACGTATGCCTCGCGT	alt_3143_upstream	22	20	37	25	33	25	29	18	22	29
TCTCCCGTTAATCTTT	ref_3143_upstream	123	161	149	128	197	121	154	139	201	98
ATGGGTCCATTTTGGG	alt_3143_upstream	52	28	63	59	23	63	23	41	29	39
CATCCACCACGTGCTT	alt_3143_upstream	186	103	178	169	115	133	139	145	122	137
CCTTTATCGGGTATTC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTCTCAAATTGT	ref_3143_upstream	48	33	45	57	44	51	42	28	30	40
CTACGGTTCCTTACTA	alt_3143_upstream	8	4	8	8	2	6	14	5	11	7
TGAATCAGTGAAGTTT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GTGACTCTCTTTTATT	alt_3143_upstream	37	25	55	47	22	48	26	38	23	40
CGCCGCATACCCTTAT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CGATTTTTAGATCTGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCGGGTTCGTGGCGTT	alt_3143_upstream	39	19	32	33	28	29	29	32	25	33
CCCGGTTTTTGTGTGC	alt_3143_upstream	5	13	8	10	15	8	19	7	10	9
CTCGTGCTGTCCGTTC	ref_3143_upstream	38	49	59	45	40	47	50	38	32	34
GGTGGCCTTTTCTCAA	alt_3143_upstream	34	13	37	32	17	27	22	26	20	25
TGATACATATTATACG	alt_3143_upstream	51	50	62	65	44	69	53	70	51	61
CGATAAGCGATCGATT	alt_3143_upstream	110	109	101	102	114	85	114	104	104	85
ATGGGATGTCGTATCA	alt_3143_upstream	51	43	66	58	38	59	32	43	50	39
AGGTACATTCATCCGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTACGGGGGAGA	alt_3143_upstream	392	298	450	369	352	357	290	354	294	365
TCTTTCGGGGAACCAA	alt_3143_upstream	33	25	35	44	34	27	33	35	25	31
TCTATTACGTTTTTTT	ref_3143_upstream	65	50	86	81	62	53	56	73	48	69
TAAATTTGCTATCCAT	alt_3143_upstream	6	5	8	12	6	6	6	8	7	6
GTGCAAACGGATCTTT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TACTTAAGGGCTTAGG	alt_3143_upstream	55	50	66	48	49	49	61	46	41	48
GCGCTCGATATGTACA	alt_3143_upstream	39	31	53	53	34	35	62	41	30	33
CCCTCCTTTCGGGTCC	alt_3143_upstream	8	3	1	10	7	9	5	5	4	5
TTTCGTGCCTCAACGG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGTATGTGGAGCC	alt_3143_upstream	92	81	96	102	80	86	87	96	89	88
TCCGATTCAACGGCCA	alt_3143_upstream	28	19	40	48	32	34	33	33	23	21
GCTCGGCACTTGTTAT	alt_3143_upstream	22	15	31	15	11	15	19	17	15	17
TGCCGCAATGCGCTCC	alt_3143_upstream	2	1	10	4	6	7	9	7	3	5
ATGGTTTCCGGGACAC	alt_3143_upstream	39	36	66	58	39	47	43	38	38	39
CTGTACATTTTGAATT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAGAGTAGGTGGA	alt_3143_upstream	203	151	234	213	165	185	148	210	160	169
AGCCTCTCACTCTTTG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCTGCTGGGATCT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GATCGTTACATGGTTT	alt_3143_upstream	27	13	30	25	24	22	17	23	16	19
TCTTGGAGGGTTGATT	alt_3143_upstream	3	0	1	1	1	2	1	2	2	2
GTTGTCCTAAACTCGT	alt_3143_upstream	42	26	47	35	22	39	34	47	34	29
GCGTCCATTCTGCCCT	alt_3143_upstream	16	9	22	17	10	19	8	15	12	10
GCTATTCAAGAGGCCA	alt_3143_upstream	23	24	37	21	23	31	21	25	19	36
TTAATTGGACGCTGGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGGACTGTACCGG	alt_3143_upstream	28	45	33	13	57	10	40	10	57	22
AAAGGGCTGGAAATGG	alt_3143_upstream	174	123	202	170	93	162	102	168	109	161
TCTTGGTCCATGGGGG	alt_3143_upstream	60	35	70	59	53	57	49	62	50	54
GTGCCTGACACCTTAT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
AACATCGATCGAAAAG	alt_3143_upstream	28	25	47	29	33	32	27	23	35	40
TTCTAAATGTCGTAGA	ref_3143_upstream	300	291	386	317	294	293	281	283	303	274
ACTGGTGCCCTCGTTT	alt_3143_upstream	15	7	17	3	4	10	3	7	9	15
GTCGTCGCCACTGTAA	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTCGTTAGCTCGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCTATAAGTAGGGGAA	alt_3143_upstream	2	5	8	8	2	8	2	8	3	4
GTGTGTGCGGATCAGC	alt_3143_upstream	1	3	4	2	1	1	2	5	6	3
CGGCGTCTCCTCAGCT	alt_3143_upstream	106	60	123	143	68	124	70	113	56	104
AACAATTCCGGATGAT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTCGATGGCATACTTA	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTTGTGGGGGCT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
ATGAATTTTCTTGTCA	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGAGTTCATCCG	alt_3143_upstream	35	25	41	39	16	21	15	22	17	35
TAGCGTGATCGACATC	alt_3143_upstream	118	83	119	118	92	123	108	112	81	110
CGCTGGGCGCTTGTAC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTGCCTTAACAACTGC	alt_3143_upstream	43	30	60	43	44	32	57	60	31	49
TGGCCAGCCCAGCTAA	alt_3143_upstream	22	7	18	13	13	35	11	21	16	10
CACTTGTTTGGGGCGA	alt_3143_upstream	79	59	64	77	64	49	59	81	37	50
ACCTCATCGGAATGAC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCCCCGCTCTGGT	alt_3143_upstream	8	11	13	8	11	8	14	5	11	6
ATCTTCGTAGCGTAAT	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCTTTGGTGTTGA	alt_3143_upstream	177	103	209	154	114	142	111	140	141	133
ACAGGGTCCAACCTGG	alt_3143_upstream	10	12	4	13	2	6	7	10	3	8
ACACGCGCTTCGTCCC	alt_3143_upstream	90	55	118	85	65	75	73	76	66	81
GTGTCCCCAGTTTCCA	alt_3143_upstream	19	12	24	12	11	26	21	12	12	15
AAGGCTTGGAGGAATG	alt_3143_upstream	43	42	76	53	52	62	39	48	55	59
GTTAACTCTCTCCTTC	alt_3143_upstream	34	17	47	38	16	30	24	32	21	22
AGGGAGGCGCTACCTC	alt_3143_upstream	21	14	18	18	15	15	13	16	10	4
CACCTACCAGCCGTCA	alt_3143_upstream	49	42	39	39	44	51	49	46	40	48
TGCTGGAATTCAGCCC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGTCACACTAGC	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTCCAGTCTAAAC	alt_3143_upstream	3	6	0	11	2	4	4	5	9	6
GTGAAACACTCTGACA	alt_3143_upstream	16	15	23	16	15	21	24	12	19	12
TTCTGCTTGGTATTTT	alt_3143_upstream	36	33	73	45	30	41	42	48	38	39
ATCTTTCTTTAATAGG	alt_3143_upstream	17	8	22	12	9	9	11	19	13	13
GCTCTTGTCGGCAGAA	alt_3143_upstream	63	40	92	62	32	54	67	55	56	63
TATACCCAAGTATTGG	alt_3143_upstream	0	0	0	0	0	0	0	0	0	0
CTAAAGCATCTACCTC	alt_3143_upstream	1	7	12	6	7	4	7	2	4	6
CGCCTCGGGACTCGGG	alt_3143_upstream	136	104	126	155	98	127	88	120	76	132
TGCGCCCTTGTCCAAG	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
GATGTCACTTTAATGC	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
GATCTCCTTCCGATTC	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTCTGGATATATA	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCCTATGCAATGG	ref_4116_reverse	23	44	36	25	46	25	43	25	49	28
TGCCACTGGTTGTTTG	ref_4116_reverse	5	32	18	18	30	14	27	14	47	13
TGTTCCATGGTATCCT	ref_4116_reverse	24	30	20	14	29	30	48	28	51	15
TTCTACAATCTGTCCG	ref_4116_reverse	27	34	23	22	41	20	39	20	49	20
CGTGTTCAGTTCAATC	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CTAGATTCTTTAGCGA	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCAGTAGCAAAGT	ref_4116_reverse	24	42	16	15	55	20	42	20	43	20
TTCAGGCATGAGTCTC	ref_4116_reverse	8	16	5	8	9	10	16	7	17	1
TTTGAAGAGCAATTCA	ref_4116_reverse	38	75	53	45	74	47	74	54	68	41
TGGACAGACACTAGCT	ref_4116_reverse	0	2	1	0	0	2	1	0	1	0
GAAGGTGTCCGTCATG	ref_4116_reverse	24	77	44	33	67	44	67	34	65	29
GAGTCCGCGGCCTGCG	ref_4116_reverse	45	67	59	46	85	56	91	47	66	51
TCGGTATTTTCTTAGT	ref_4116_reverse	13	28	20	17	19	14	38	15	29	17
CTACTTTGGTTAATGT	ref_4116_reverse	71	131	113	68	142	86	153	77	163	67
TGATCGTCATAGTGAG	ref_4116_reverse	10	23	13	7	24	7	16	6	20	5
CCTCCATCGGGAATGC	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAGTGGGGGATCT	ref_4116_reverse	13	19	14	24	22	21	19	11	32	19
TCCGTGCTCAACACAC	ref_4116_reverse	6	32	12	11	26	5	35	6	35	5
GGAACAGGCTCCCTAG	ref_4116_reverse	10	23	9	11	24	13	30	11	19	9
GGTGGTAGCAAGGACA	ref_4116_reverse	1	0	0	0	0	0	0	2	0	0
CCCCAGGTACCGATTT	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCCTATTCAGTCT	ref_4116_reverse	9	19	11	11	37	11	26	12	28	16
CTTACCTCTGTCAATG	ref_4116_reverse	7	50	11	14	46	13	37	7	47	2
TTTACTTTCTCCTATC	ref_4116_reverse	18	21	15	15	9	10	34	15	22	22
CGGGTAATAGGCCAGG	ref_4116_reverse	45	69	52	33	86	51	81	45	98	35
TCGCCTGCAGACAAGT	ref_4116_reverse	57	85	72	49	110	49	71	42	87	55
TATTTCCGCATGTAAT	ref_4116_reverse	32	53	42	22	41	17	32	27	49	29
CTGCCGGTTATATTTA	ref_4116_reverse	5	25	11	10	22	7	27	5	25	8
TTCCCCCCTAGTAGCA	ref_4116_reverse	73	167	115	96	186	76	205	86	190	95
TTCTAGCCCTCCCGGT	ref_4116_reverse	45	178	39	43	158	28	168	30	190	22
TGGGCCTGCAGACATA	ref_4116_reverse	8	10	7	8	13	8	13	8	12	3
CCACCTCGTCTCGCCA	ref_4116_reverse	29	61	30	32	67	22	73	28	69	17
CCCAGTAATGGTCACG	ref_4116_reverse	14	25	20	22	31	22	37	17	33	23
GCAGTATTGTTTTGTG	ref_4116_reverse	29	48	46	22	44	29	64	33	65	25
GCGGTGCGTATGTACC	ref_4116_reverse	8	24	10	4	19	7	27	6	20	5
TCGCAGCGATGAATTA	ref_4116_reverse	32	55	33	22	53	29	61	25	46	26
CTGGTGGTTTTTCAGA	ref_4116_reverse	16	54	24	21	38	17	41	28	36	19
AATCTCCTTCTTATTC	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTTCAGGGCAAAC	ref_4116_reverse	3	3	2	0	2	0	0	6	0	1
GCCCCTTCTCCCGCCT	ref_4116_reverse	26	41	43	38	54	35	53	48	47	33
ATGCAAATGTTTTTGA	ref_4116_reverse	83	180	98	77	166	83	162	85	175	88
GCAATGACGGGGCCCA	ref_4116_reverse	4	2	2	3	0	2	3	1	6	1
AACAGCTGTGAATACT	ref_4116_reverse	16	22	23	17	24	18	27	15	25	9
TCATCAACCTGGCACG	ref_4116_reverse	86	140	94	95	162	83	196	77	169	77
GCAGATTTTCGGTTTA	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGGCAGAGGGATA	ref_4116_reverse	87	153	125	94	148	88	166	70	155	83
CAACAAGGCTGCCCTG	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CCACATCTGGCTAGGC	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
TTAATCCTCTTGATAC	ref_4116_reverse	2	1	1	1	2	3	6	3	0	3
ACAATTAACGGTCTCT	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CGCGGCTAAACATAGA	ref_4116_reverse	312	549	428	363	594	314	587	343	609	327
TAGAACTAGAGTAAGG	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CTGGAAGTTGAATGGG	ref_4116_reverse	10	11	20	12	11	7	10	10	11	10
CCTTGCAGCCGCACTT	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
ATTTACATTGCCGATT	ref_4116_reverse	52	67	44	50	65	35	72	38	66	33
TGCTTCATTACAGATC	ref_4116_reverse	25	41	32	23	43	32	41	28	66	17
TAGAACTAGAGTGAGG	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
TATGGACTAGCTGCTC	ref_4116_reverse	2	2	2	1	3	1	3	2	6	1
TCCGTGTACACGCGGC	ref_4116_reverse	28	62	34	27	70	29	56	20	66	26
GCTTGCAGTGTAGTTG	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTCTTAAACATC	ref_4116_reverse	52	91	83	54	118	50	130	60	90	64
GGCCCATTTATTTCTA	ref_4116_reverse	15	21	11	13	19	18	22	7	30	15
CCGCTATTGGGCGTCA	ref_4116_reverse	3	20	8	8	11	3	12	5	7	5
TGCCGTCAAACATCCT	ref_4116_reverse	69	96	82	64	128	63	110	64	117	45
CTACAGAGAAAAGTCC	ref_4116_reverse	6	21	23	11	17	12	25	11	30	16
AAGGCACGCGAATCTA	ref_4116_reverse	7	8	13	10	11	7	6	11	5	6
ACTGGTTTGTGGCGAT	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
GATAAGGCTGCCTCGT	ref_4116_reverse	0	3	2	1	0	1	3	6	2	1
CGGAGTACCATTTAGG	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
AAGAGTCTAGGAATCA	ref_4116_reverse	0	0	0	0	0	0	0	0	0	0
CTTACACTTAAATTAC	ref_4116_reverse	3	4	0	4	1	4	6	2	8	5
GTATTTGTCGCACAAC	ref_4116_reverse	23	16	10	13	28	14	17	10	33	21
GGCAGTTTTCCCGATC	ref_4116_reverse	4	7	2	0	6	1	5	1	2	2
CTGTCTCTTATATTTA	ref_4116_reverse	2	3	0	2	5	2	5	0	1	3
AAGAAATCGCAAGGCA	ref_4116_reverse	15	23	15	7	18	12	19	13	29	11
GGGCATCGACTTGTCA	ref_4116_reverse	48	55	52	43	54	46	49	33	64	62
ACCGTCTCGACTACAG	ref_4116_reverse	9	23	16	11	19	5	22	15	27	10
CTCGGTATTGTCTTGC	ref_4116_reverse	70	135	84	67	113	76	125	61	167	64
ATAGTAGATGCAAACT	ref_4116_reverse	2	3	3	3	9	4	5	5	6	5
TGAACTTAGGCCATAG	ref_4116_reverse	6	12	2	6	25	8	11	1	15	2
CCGCTTGTTCAGGGTT	ref_4116_reverse	7	13	10	5	21	6	8	6	17	13
TTTTTAGTATACAATG	ref_4116_reverse	25	39	20	20	22	11	27	14	42	11
CGCGCTCTTCGTTAGT	ref_4116_reverse	34	44	33	31	37	28	55	22	35	25
TCGGGAAAGCTGACTT	ref_4116_reverse	39	75	37	34	52	30	50	38	57	34
GCACGGTTCCGCATAG	ref_4116_reverse	96	179	128	81	151	96	192	87	192	102
CACATCTTCTCTTTTT	ref_4116_reverse	33	31	35	21	32	16	32	28	58	33
CTTACGGTTTTTCGAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TATATGGGCTCCTCTT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TAACCTTTTGATTGTC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TCGTTATCCTGGGGTA	ref_6111_new	40	62	36	34	77	42	74	37	88	22
CTTTTGTAGATGCGCC	ref_6111_new	2	6	4	9	7	0	17	1	9	5
GGGACAAGGGACATCT	ref_6111_new	12	10	9	12	11	2	17	3	24	4
CTGGATGTCAGCCTCA	ref_6111_new	82	210	118	90	236	95	201	97	205	76
AAATACGTTGCAAGGG	ref_6111_new	31	45	43	25	52	27	62	20	48	22
CTTTCCTACGAGACGT	ref_6111_new	13	33	26	5	22	9	34	14	35	11
CGCATACATTGATTGC	ref_6111_new	3	1	0	1	2	1	1	2	3	3
AACCGCCTGATCACGT	ref_6111_new	18	32	13	12	25	22	31	11	28	15
TCTGCGTTTCGATGTT	ref_6111_new	21	31	30	19	37	18	35	16	25	17
AAGTACGGTCGTTGCG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
ACTTAGCAACTAACTT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CTGTAATTTAAATGCT	ref_6111_new	10	17	26	18	40	13	45	16	21	18
CGCTGTTTGGCCGGGG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TGAGTCGAAGGTTAAG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TATCCACTTTTAGAAC	ref_6111_new	70	168	91	72	165	70	167	78	161	75
GATGAAAATTGTAGGT	ref_6111_new	9	22	11	12	9	12	20	5	20	10
ATTAGATTAGATCCTT	ref_6111_new	3	2	5	4	5	6	5	1	4	9
TCTAGTTTGTTCGAAC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GGCAGGCATTGCGATT	ref_6111_new	5	13	6	8	13	6	23	9	14	3
GGGTCTCCCAGGCCGT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CATATATCCCTTGCAG	ref_6111_new	10	28	9	14	16	5	31	5	38	11
TTTAGGTCGCCATCCT	ref_6111_new	17	38	17	15	47	28	37	20	32	10
CATATGATCGGAATTG	ref_6111_new	26	36	24	21	45	18	33	18	31	13
GGAGGCCAGTCGGTCC	ref_6111_new	183	384	260	218	391	188	464	190	421	154
CATCCATCACCTTTCA	ref_6111_new	8	16	6	5	16	10	23	10	18	8
ATAGGTCGGCAGATCA	ref_6111_new	11	22	13	10	20	5	16	9	19	9
TTTGTCGCTGCGTCAT	ref_6111_new	89	169	92	63	140	79	197	91	166	74
CTTAAAGACTCCCCCT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CTTACACGGCTCCCAC	ref_6111_new	2	10	2	5	4	1	4	2	8	0
ATCTTTAGGGCTGAAT	ref_6111_new	60	94	65	62	109	47	114	54	136	59
AGGTACTGTGCTCTGT	ref_6111_new	11	30	15	7	23	5	21	11	28	7
AGGGAGTTGTAGCACC	ref_6111_new	12	53	36	22	53	40	52	22	59	22
CTATTAGTTTCTGAAC	ref_6111_new	12	24	12	12	14	7	28	7	12	10
TATGCTCCTGGCGGGT	ref_6111_new	3	10	8	2	5	2	18	2	11	2
GGCACCTCTTAGGGTC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
AGCAACTTTCTGGTTT	ref_6111_new	16	19	13	14	38	6	39	18	38	19
TAATCGTCGCTCTAAG	ref_6111_new	10	26	10	15	27	12	23	9	21	14
TCAGCTTGGACCCAAC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CGGAACCCGTTCGTAC	ref_6111_new	31	81	44	31	78	36	71	35	87	35
AGCGCAGATTTTGACT	ref_6111_new	26	61	42	45	53	30	64	32	83	30
CTAACACGTTCGCGTA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
ATTTTACTTTCGCCGA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TGTGTTACGGCTTATC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
ATTGATCGGATACTTT	ref_6111_new	66	142	77	65	130	90	167	79	162	64
TAACTAGGCGTATGCA	ref_6111_new	1	14	8	6	12	1	9	2	9	3
TACCACGAGGGCCGGC	ref_6111_new	45	115	57	52	92	42	110	41	91	50
TCATAACTGTATCGAC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CTGCATGTTGGACGTC	ref_6111_new	18	32	22	11	33	18	33	20	36	7
GGGAAAGACTTCACTG	ref_6111_new	22	38	28	15	42	29	36	17	58	21
CCGACCATCTGCATGT	ref_6111_new	82	315	122	117	327	96	322	112	347	92
GTCGTATTGCGGTCCA	ref_6111_new	1	3	1	0	1	0	0	1	3	0
GTATTCGTGGCTCGCT	ref_6111_new	19	44	18	21	25	26	49	15	46	14
TGTAAATGAACTGTAG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
AGTTTTTCAGACGGAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
ACAATCAAGAGCTGTT	ref_6111_new	26	39	24	21	52	38	42	23	64	21
CTGACGGGGCCTGGCT	ref_6111_new	3	1	0	2	2	0	6	0	2	2
GCAGAAACTTGGAGTG	ref_6111_new	13	34	15	20	22	14	36	13	28	11
CCTTCTTTTGCCCCTG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GATGTGGCTGGCCGGC	ref_6111_new	34	53	42	35	58	21	49	27	56	31
TACCCAGGTTTGGTCC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TGCTCATTCGGGAAAA	ref_6111_new	7	17	12	6	20	9	18	4	16	5
GCTCTTTCGCTGCCTA	ref_6111_new	4	10	5	5	11	2	14	9	9	3
CGGCACTTTCGTCGCC	ref_6111_new	2	13	5	6	9	7	9	4	9	9
TCGTTCATAATCGCGG	ref_6111_new	5	31	17	10	17	10	18	11	22	12
TTCCGAACCCCGGTGG	ref_6111_new	6	17	7	9	9	4	14	1	12	6
TCTCACACAGTCACTT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GATCCCTATTATCGTA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CTGGATGCTTTTGCAC	ref_6111_new	12	18	14	8	26	9	34	9	25	9
GCTTCGGCGGAGCTAC	ref_6111_new	13	25	17	14	16	7	19	9	31	12
TTTCCTGGCTGTTAGT	ref_6111_new	9	24	13	11	28	11	18	13	40	7
AACATGTGATTTTGAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CGACATTGTTCGTGAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TATATTTACAGTTGCC	ref_6111_new	21	36	26	26	44	11	33	24	57	17
TTCCGGAACGCAATCA	ref_6111_new	14	14	12	13	16	8	14	15	13	11
CTCCATTTAGGTGTTC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GTAGTGCATATTCACT	ref_6111_new	2	6	10	4	16	4	19	5	13	4
TTTTGAATGCGTTTTC	ref_6111_new	22	62	22	30	51	24	81	28	59	22
TTTTCCTGCCACCCTC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GTTGTTGGGTGTCCGG	ref_6111_new	20	50	34	38	43	20	45	31	68	23
ATCTCGCTGCCTCTGC	ref_6111_new	24	54	35	35	58	30	63	38	49	21
TAGTCCAGCATTATGG	ref_6111_new	26	53	30	10	52	29	41	19	47	26
CTACCCGTTTGCTCTT	ref_6111_new	3	23	5	4	12	1	21	5	13	4
ATTTTAGCATTACCCC	ref_6111_new	12	29	15	24	22	16	28	18	22	8
GGCTGTGACATCACCT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GCGGGATGCACGAAAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GACCGTGGACCACTTT	ref_6111_new	31	60	27	29	63	23	77	34	56	35
CATTCAGCGGACTGGG	ref_6111_new	16	82	13	17	61	28	62	12	65	13
TGTACGTGACGAAACA	ref_6111_new	15	19	18	13	17	10	31	14	31	9
ACTCGGCTCCATACAT	ref_6111_new	23	53	46	22	50	21	62	21	62	26
AATGTTTGGCGTGCGC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CAAGATTAAGATTGAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TTTCGATCAGCGCCAC	ref_6111_new	39	84	49	44	86	37	82	44	104	37
TTGCTTACCGCTACCC	ref_6111_new	12	28	15	8	31	4	37	10	35	9
TATACTTCACTCAGAC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GGCATGCGCTGGGCCA	ref_6111_new	8	8	8	5	7	4	9	5	6	10
CCAACCACCCTCCGGC	ref_6111_new	6	11	9	7	14	8	12	8	24	4
CTACTCCGTAGTGCCA	ref_6111_new	0	0	0	0	1	1	1	0	0	0
TGTAATATTCAACTAC	ref_6111_new	16	33	10	14	26	12	41	16	26	9
TTTATAGAGGTCACTG	ref_6111_new	3	6	5	2	1	1	5	1	2	2
CGGAAACTCGGTCTTT	ref_6111_new	14	20	13	9	19	9	20	10	24	5
ACGCCTGCTCCAAGGA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GGTCCACTGGTAGCGG	ref_6111_new	21	52	24	19	52	24	51	28	52	16
CCGCCGTGCGATAACA	ref_6111_new	6	49	11	10	70	14	68	9	61	8
TCGCTTGTACGTCTAT	ref_6111_new	18	37	27	20	54	14	40	23	66	18
GTGCTGTTTGACGATC	ref_6111_new	27	55	17	18	46	22	35	23	54	24
TTTGTCTGAATGTATG	ref_6111_new	12	31	28	30	43	13	41	24	47	15
TTTCTCGCTGCCTAGT	ref_6111_new	15	19	8	15	17	10	23	8	25	10
TTTCGCTTATAGTCAA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GTTCCTACAACAAGCT	ref_6111_new	23	80	31	25	63	32	55	35	61	28
TTGCAATCGCGTTGGG	ref_6111_new	200	383	221	190	428	206	375	185	431	137
CAAGTCCACACCCTGG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TCATTCGCTCGGTCAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
AACGAAACAGCCCCTA	ref_6111_new	5	6	4	10	13	5	4	7	10	2
CAGATTTTCGCTATTG	ref_6111_new	5	9	8	4	6	9	11	6	12	6
GCAGGCTGATCCACTC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GTCCTTACGTGAATAC	ref_6111_new	28	58	42	26	49	26	58	22	75	16
AGGAGTATCTTATGAA	ref_6111_new	17	35	12	18	28	17	51	12	45	8
TTTCGGATCGTTGTTT	ref_6111_new	11	24	20	11	20	10	30	17	19	16
CCGCCATTTATATCAA	ref_6111_new	25	82	40	41	82	24	60	40	75	39
TTGTGCGCAACCTCCG	ref_6111_new	4	11	6	4	14	5	14	7	25	10
ATTACACTAGGTTGTG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TGGAAATGCAGTTAAT	ref_6111_new	12	20	28	16	27	18	22	8	28	10
TTCACTCTTCTTCAAA	ref_6111_new	9	26	17	13	45	17	47	12	44	13
TTCGTGTCGCCATTGT	ref_6111_new	12	27	22	9	29	11	35	8	28	9
GCGGCTGCTATCTTGT	ref_6111_new	9	28	18	17	35	20	40	18	24	15
TGAACGACTTAATGAT	ref_6111_new	6	9	9	5	6	4	7	6	8	3
TCTGACTTAGCCCGCA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
CACAGGTCTCCTTGTT	ref_6111_new	4	12	7	4	5	2	3	3	6	4
TACTGGTGCTGCTCCC	ref_6111_new	14	10	16	4	14	10	13	9	12	3
GATAGCGCTCTGCAAC	ref_6111_new	10	46	19	15	28	20	31	13	35	16
TAGCAGGCATTGCCGA	ref_6111_new	6	21	14	11	14	12	20	8	21	5
GCTCTAGAACTTTCTG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
ACTGCCTGGTTTACCC	ref_6111_new	7	8	8	8	8	10	13	7	9	4
CTAAAGGCTAAGCCAA	ref_6111_new	4	10	3	3	12	10	16	4	15	5
GATATTAAAACTCGTT	ref_6111_new	1	6	8	0	6	8	5	3	1	0
CTTCATCCGTCTCGAC	ref_6111_new	11	20	8	8	29	10	26	11	14	19
ATAGCGACACGTTTGT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GTCTATTCCACTTTCA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
AGTGCCATGCGCGCAA	ref_6111_new	5	6	2	3	4	5	13	4	10	5
AGATAACAAAACCATT	ref_6111_new	9	8	5	2	10	6	9	6	12	4
TGGCACAGTATTCATC	ref_6111_new	25	48	38	29	56	21	47	27	67	20
GGTGTTCCCATAGTTT	ref_6111_new	35	119	49	49	125	39	99	48	104	44
TAGTATTTGTGGCTTC	ref_6111_new	27	50	35	37	55	38	69	30	70	23
ATCCGTGTGCCACCTC	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TTTAGCGTTCGGCTTA	ref_6111_new	45	79	54	39	107	34	86	44	88	50
ACAGGTTCCCTCATGG	ref_6111_new	6	7	4	4	13	4	12	5	8	4
GAGTATTAGTAATCTT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
TTCATTTGAATGTATG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GGTTTCACTCCCAGCC	ref_6111_new	6	18	2	10	23	9	23	6	19	6
TATCCATACTTAGCAT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GGGGGCCCCTCAGTTA	ref_6111_new	0	0	0	0	0	0	0	0	0	0
ATCCATTCGAATCTCT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GCCGGCAGGAGATTTT	ref_6111_new	13	36	26	28	39	34	46	17	44	26
TATGCGACAAAGATCC	ref_6111_new	5	9	3	8	20	6	23	12	19	14
TATCTCCGGTAGAGGT	ref_6111_new	11	7	5	6	11	4	9	6	10	9
AGAACTGGCTCGCATG	ref_6111_new	9	22	6	6	17	8	11	3	18	2
TTCTGTACAGTTATGT	ref_6111_new	10	25	6	5	21	14	23	13	42	7
GCCTACTCGGATACCT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GACTTTGGAAACCTCA	ref_6111_new	118	234	124	103	237	85	247	75	309	103
ATTGTATATTCCCTCT	ref_6111_new	0	0	0	0	0	0	0	0	0	0
GATCTTGAGTTTTCAA	ref_6111_new	4	9	3	5	7	5	11	8	22	2
CCTTGCAGTTAAATTG	ref_6111_new	34	67	41	27	95	34	83	27	90	27
CGTATCGCCCAGACAC	ref_6111_new	9	11	9	9	19	4	15	2	12	7
GTAACGGTTCACCGTG	ref_6111_new	0	0	0	0	0	0	0	0	0	0
AGTGATCTTTTTATAA	ref_6111_new	28	36	27	22	44	22	49	22	40	11
AAGAGTTTTTTTAGTT	alt_1720_fdr	33	21	39	50	24	37	21	28	31	46
CGCTTGTTCATATTGT	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTTCGCCGATGTT	alt_1720_fdr	19	18	27	30	8	16	16	19	15	21
ACGTAGGAAGGGCAGT	alt_1720_fdr	30	39	52	49	24	43	26	47	20	42
CTTCGGCGTTTCCATC	alt_1720_fdr	81	59	97	85	52	80	47	80	41	62
CCTTGAAATCGGAGAA	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
TACTCCGGATAGGCCA	alt_1720_fdr	26	12	27	26	21	20	23	35	24	26
TTTACCCCTGTCTCCC	alt_1720_fdr	19	11	21	27	17	13	11	15	12	13
GCCGGGTCTACGCCCA	alt_1720_fdr	26	21	37	37	18	17	24	28	27	30
ATTTAAACAGCTCATA	alt_1720_fdr	51	36	80	64	34	52	33	37	36	46
GTATAGGCTGTAAGAA	alt_1720_fdr	34	26	32	41	22	36	25	36	24	23
TTTATAGCGGTTTTGG	alt_1720_fdr	78	40	105	69	46	84	63	72	71	49
GGAGTCAGTGATAGCT	alt_1720_fdr	29	26	44	43	16	23	13	26	28	38
TCGGTAGAGGTCTAGC	alt_1720_fdr	50	25	54	41	27	39	24	48	22	32
GCCCAAGGTATCTCGA	alt_1720_fdr	0	0	2	2	1	2	0	0	0	0
GCGATAATTGGGATTC	alt_1720_fdr	23	12	33	26	20	30	20	16	35	25
CTTGCTTGACTAAACC	alt_1720_fdr	11	5	18	14	10	12	6	12	16	12
TGTCGGCCGGAAATTA	alt_1720_fdr	56	41	59	51	27	46	25	55	20	44
CCCAAATTGGGAAACG	alt_1720_fdr	17	9	21	25	16	15	20	15	11	17
TTGGCCTATGGAGGAC	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTACATGTTATTA	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTCAATTTCTGGG	alt_1720_fdr	4	6	14	4	5	9	7	8	5	6
AGAAAAATGGACCCAG	ref_1720_fdr	96	49	119	86	39	92	56	89	50	73
ACGCGCGTGGGACGTT	alt_1720_fdr	14	9	20	16	12	10	10	15	11	16
ATTAGACATTTGCATA	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
AGATATAACGCTGTTG	alt_1720_fdr	19	19	30	17	12	11	12	22	11	19
TTACATTACTCGGGTC	alt_1720_fdr	33	16	39	35	33	39	30	41	19	29
TATCTGCAACTATGAC	alt_1720_fdr	54	53	71	43	55	49	57	59	42	57
ACTGCGCCTCTTATCT	alt_1720_fdr	88	49	95	81	60	84	47	90	71	89
GTCTTTGCACCCCTCC	alt_1720_fdr	24	24	30	24	24	33	28	17	21	24
ATTTTCTTTTAATCAA	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
CGGAGCCTTATTGATA	alt_1720_fdr	19	10	31	18	12	11	14	15	13	21
TCAGTCTTGGTATGCA	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
ACATGGGTATCCTCTG	alt_1720_fdr	423	223	519	460	247	377	240	428	249	341
TGGGCTAGTGTTTTGG	alt_1720_fdr	103	78	113	108	77	79	72	86	60	78
TTCGTGAGCGTTCCGA	alt_1720_fdr	142	122	246	177	101	182	138	136	127	138
TCATTCCCATAAAATA	alt_1720_fdr	29	28	39	22	35	30	24	27	30	21
GGTTCTGGTAGTAGAC	alt_1720_fdr	14	5	6	10	4	24	6	14	11	13
CGCCTTCATTAGAGCC	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTGCAAATACAGT	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCGCTGTGCTCGT	alt_1720_fdr	23	28	29	19	23	21	21	27	22	13
TGGGTACTCAGCACAG	alt_1720_fdr	39	15	33	22	18	31	21	29	17	15
GTCCTCTCTGCGGTAC	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGCGTCGGCTCAG	alt_1720_fdr	39	28	46	51	28	33	27	33	27	34
GGACGTGCCCTTCCAA	alt_1720_fdr	170	92	231	196	97	188	121	179	129	156
AATTTGGAGGGGCACG	alt_1720_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTCACGCTTCTTG	alt_1720_fdr	40	17	62	31	28	26	26	31	26	28
AATTAAGAGATCCTTA	alt_1720_fdr	63	33	84	59	48	70	48	74	47	66
TCAGATTACCTCGGAA	alt_1720_fdr	200	124	209	206	108	197	125	213	120	166
GTTCAAGCCGAACAAG	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTTTCAATTTAGG	alt_2069_reverse	9	26	10	11	20	13	13	11	35	19
TTGGGGAACTCCACGG	alt_2069_reverse	27	32	26	16	36	25	37	22	36	29
CTACGGCTTTTAGTAC	alt_2069_reverse	5	6	7	11	10	3	3	8	8	8
GTTCTCGTTGGGAACG	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
GCAACGAGAGCTTTCT	alt_2069_reverse	4	7	11	14	11	11	8	2	16	7
CGCTGGCTAGCAAGTT	alt_2069_reverse	18	17	18	19	25	25	15	14	16	13
TACGTGCACTTACTTA	alt_2069_reverse	40	72	54	42	70	36	89	41	74	47
ATAGTGTGATTGTGGC	alt_2069_reverse	31	39	41	41	50	33	40	22	45	24
AACCCCGGAGAGATCA	alt_2069_reverse	48	66	72	50	72	46	72	35	81	33
TCTTGGCATGAAGGGC	alt_2069_reverse	7	11	11	12	5	7	7	4	8	4
GAAAGTGCTCTATCGC	alt_2069_reverse	5	12	11	10	8	8	9	8	5	2
TTTAGTCACCTTTCTC	alt_2069_reverse	36	48	23	26	28	25	44	19	36	34
TGAAATGAACAGAACG	alt_2069_reverse	5	11	10	6	9	8	9	7	12	12
CCCTTTTCCACGTCCT	alt_2069_reverse	2	1	1	2	1	2	1	1	1	0
GCTCCCTCGCCGCTAT	alt_2069_reverse	14	33	24	20	43	14	33	15	42	15
GTAACCCGTGTATCGT	alt_2069_reverse	13	15	20	12	23	10	27	14	20	6
TATGGACGTTATTGGA	alt_2069_reverse	5	1	6	4	6	4	3	2	9	1
ATTAACGCACTTAATT	alt_2069_reverse	3	2	7	8	6	6	6	4	8	6
CGAAGCGATCAGGCTT	alt_2069_reverse	19	27	29	18	32	26	35	21	32	16
GCTATTCCTCGTTTTG	alt_2069_reverse	309	343	374	318	373	255	362	330	354	237
CCCTTCTTAGGGCCCC	alt_2069_reverse	35	45	45	30	45	47	54	41	35	31
CGTTTCAAGCCGAATG	alt_2069_reverse	7	19	9	14	15	3	18	7	18	12
GGACATCTGTTATGGG	alt_2069_reverse	37	48	47	30	42	39	54	43	60	34
GCTTGCTGAACTTCAT	alt_2069_reverse	24	32	33	25	54	36	42	25	49	22
GAGGATCGGATGCTAC	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTCGCCAGGGTCC	alt_2069_reverse	32	37	44	34	52	26	41	26	24	29
CGCCTCTAGCTTGCAA	alt_2069_reverse	35	32	32	21	28	23	39	23	36	19
TTTAGCCTGTCATCTG	alt_2069_reverse	69	87	64	60	67	57	73	45	84	49
TCAATCTGTATGTGTT	alt_2069_reverse	12	18	18	13	15	17	22	11	22	10
TTCAATGCTGTCTAAA	alt_2069_reverse	39	65	54	42	61	34	55	31	56	28
TCGACGTTAGTAAGCA	alt_2069_reverse	0	1	0	0	0	1	1	1	0	1
AGCCTGGCCAGTTGTC	alt_2069_reverse	12	10	7	2	19	5	10	4	11	6
CTTGCTACCTGAGTGC	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
TAGTATTACATAATGG	alt_2069_reverse	35	45	52	55	35	38	62	41	57	24
GCTGTCGTCTGCATCA	alt_2069_reverse	12	14	17	15	12	10	20	22	23	7
ACGTTCTTAGGTTTCA	alt_2069_reverse	51	60	59	36	60	38	60	41	63	45
GTTCACTACGGACCGC	alt_2069_reverse	7	8	8	6	11	5	4	4	13	8
TATTGTTGTCTCAGAC	alt_2069_reverse	51	77	57	38	78	50	73	43	90	47
GGAATTTGGTTGTGTT	alt_2069_reverse	2	1	0	6	4	3	13	2	2	4
GATAAGGTGTATAATA	alt_2069_reverse	250	323	277	191	296	236	381	233	335	191
TGCGCCCTTTGTGTAA	alt_2069_reverse	8	6	5	10	16	2	6	10	10	9
GGTTCCGTGGGTAAGT	alt_2069_reverse	62	77	98	68	71	55	82	63	72	51
TCTCACATGCCCATTT	alt_2069_reverse	4	9	14	14	8	12	14	9	11	6
TTAGCGAGCGCTTAGG	alt_2069_reverse	18	38	16	10	21	19	27	15	25	10
CGCTCTTGAACTCAGG	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTAGATTAATTCC	alt_2069_reverse	47	40	73	57	69	55	60	42	86	47
AAAGGTCGCAGACGTT	alt_2069_reverse	231	272	268	220	256	214	275	231	288	148
GGCCGACGTGGATGCC	alt_2069_reverse	34	70	40	32	102	29	76	44	95	34
GTGGTTTGCTACAAGT	alt_2069_reverse	1	4	3	3	3	6	1	0	1	8
GACGTCTCACATTTAT	alt_2069_reverse	28	36	20	28	22	20	22	21	21	17
CCGTTACCTTCGTGTT	alt_2069_reverse	9	22	11	8	34	6	16	2	25	6
ATAAATCCATTCTCTC	alt_2069_reverse	47	48	52	37	42	31	48	48	60	38
CCGTTTTTTTAATGGC	alt_2069_reverse	6	20	6	15	18	9	10	12	19	10
ATCACTTCGTTTATGT	alt_2069_reverse	22	23	24	16	25	9	20	16	25	9
AGCGGTGTCACATATT	alt_2069_reverse	21	54	39	28	49	26	44	22	31	31
ATCCCTACGATGCTCT	alt_2069_reverse	16	38	21	15	21	25	23	25	22	24
GAGTTGTATGTTGGGG	alt_2069_reverse	8	11	8	15	15	11	9	12	15	6
TGATCATGCTCTGAAA	alt_2069_reverse	5	9	8	5	10	6	9	8	13	0
TCGCATAAAGGTTTAA	alt_2069_reverse	21	26	28	26	32	28	30	37	35	15
TCACTTGCCGTGCTCG	alt_2069_reverse	8	8	8	16	11	6	10	13	10	5
TCCGACTCATAGACTA	alt_2069_reverse	0	2	0	0	1	1	1	1	1	1
TGGGGTGCTTCGTAAC	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGCGCTGTCTTTT	alt_2069_reverse	19	32	28	36	37	22	45	25	39	28
GGCTATCCAAATTTCT	alt_2069_reverse	11	24	14	22	17	22	21	12	22	10
ATGTTTTGTGGTCATA	alt_2069_reverse	18	22	28	20	21	29	27	10	42	16
GATACCGAACCGTACA	alt_2069_reverse	2	5	7	3	6	5	5	2	1	4
GCGTTGCTCATCTAAT	alt_2069_reverse	8	10	10	10	12	7	17	10	15	6
CAGGATTCCTAATATT	alt_2069_reverse	13	6	7	5	8	5	9	7	9	5
AAGGTTCTCAGCTTGA	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTGTGCGCTGCCA	alt_2069_reverse	10	25	16	13	27	10	24	15	31	9
TAACAGTATGTCACAT	alt_2069_reverse	44	52	35	28	47	25	47	25	49	26
GTGCGCTTGCATCCTG	alt_2069_reverse	42	58	52	40	41	30	55	34	49	37
TATTCGTGTTGATCTA	alt_2069_reverse	36	58	65	37	34	39	96	36	66	37
GATCCAGAAGATCTGC	alt_2069_reverse	42	70	56	60	61	47	62	41	66	53
GCTTGCATACTGTGCT	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
CGTATCTTATGTTCGC	alt_2069_reverse	21	23	17	28	30	21	33	15	22	21
CTGTGCTGCGTACATT	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
GCGACCATGGATGTAC	alt_2069_reverse	69	86	72	74	71	65	76	50	83	58
GTGGCCAATTGCCGAT	alt_2069_reverse	29	47	60	45	43	18	49	28	38	25
CATAAATACTAAACAT	alt_2069_reverse	10	15	15	14	15	12	17	12	18	17
CGGTCTAGTCCTAGGT	alt_2069_reverse	0	11	1	3	5	0	10	1	8	0
TTAAGTTTATACAATT	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
TATGCAGTATGTGCTA	alt_2069_reverse	14	11	8	10	18	9	10	6	20	16
ATTATTAGTCTACCGC	alt_2069_reverse	17	51	35	26	43	23	32	30	30	33
TGCCGTGAACTCGGTC	alt_2069_reverse	22	31	32	23	29	26	22	20	25	26
GTTGCTGTTGCGGCAT	alt_2069_reverse	29	22	28	31	36	15	39	22	36	20
ACAAACTACCAGAGTG	alt_2069_reverse	18	47	30	30	29	33	49	39	43	28
GCGTCTAGGTGTTACC	alt_2069_reverse	9	12	12	7	27	9	13	10	16	8
TCTCTCATAATGGTGC	alt_2069_reverse	17	22	17	13	14	15	26	12	20	10
TTTAAAACGTCTTATG	alt_2069_reverse	16	21	21	9	19	15	17	11	15	13
GCTGCTTAAGTCCGTT	alt_2069_reverse	15	16	12	8	12	12	17	7	11	8
GAGTTCTCTCCTCAGG	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCTAAAAGATCAT	alt_2069_reverse	7	12	13	4	11	13	7	4	11	3
TTTCCGAAATTGTCTG	alt_2069_reverse	10	8	13	14	20	13	18	13	20	13
TGATAGGATCATTTGA	alt_2069_reverse	4	6	11	10	6	6	7	6	6	5
TCCATTATTGGTCGAG	alt_2069_reverse	52	78	47	49	71	49	96	52	97	47
GGCACTGCCGTTAATG	alt_2069_reverse	25	21	20	26	29	15	24	23	17	17
TAGGCAAAGCGTGAGG	alt_2069_reverse	6	6	3	7	4	2	3	1	4	5
AATTGCGATTCGCGAC	alt_2069_reverse	1	0	0	2	0	1	1	1	2	1
CTCTCGGAGAACAATT	alt_2069_reverse	16	18	12	29	26	11	26	13	25	15
GCATCTGATTCCGGCA	alt_2069_reverse	11	13	7	7	8	6	12	4	10	10
TTAGAGCTATAGCCCA	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCCCTACTTTCGT	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
TTCATCAAGCTTCTTG	alt_2069_reverse	24	18	30	20	20	20	20	15	20	15
CTCTATGGATTAGGTC	alt_2069_reverse	6	5	7	3	10	6	5	3	8	2
ACGACATTCAATCCAC	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
TGAGAGAGGTCGTTGC	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTTCGCCTTCGT	alt_2069_reverse	11	12	11	6	5	6	12	9	12	11
TTGTTATTCGAACCTC	alt_2069_reverse	166	171	218	160	183	154	219	159	203	153
AGTTAACTTCAACTGT	alt_2069_reverse	5	6	7	1	2	5	3	3	3	0
GGCTCCGGCTGCGCGT	alt_2069_reverse	162	200	201	164	196	183	199	143	214	155
GGAGCGTGTGATTGCG	alt_2069_reverse	0	0	0	0	0	0	0	0	0	0
GTAATGGTGGGAGATG	alt_2069_reverse	26	30	25	29	35	23	28	23	45	21
TAACTAACCGCTCTAT	alt_2069_reverse	10	22	13	5	14	6	14	7	22	8
GGTCGGCACTGTTTAA	alt_2069_reverse	12	4	8	5	8	2	6	3	11	11
TGCACTGGTATTCCCT	alt_2069_reverse	13	23	11	11	8	7	19	13	20	16
GCATTTGGTAATATCC	alt_2069_reverse	72	107	83	65	116	88	131	63	124	60
GTCCTCCGGTTCATAC	alt_2069_reverse	42	44	29	34	58	33	50	30	56	25
GTGCCGAGTAAAGCCT	alt_2069_reverse	2	10	7	6	6	11	9	5	12	7
AGTCTGTTTGGATTTT	alt_2069_reverse	18	24	31	11	26	19	28	7	22	11
AGTGACTCTGACGGCT	alt_2069_reverse	9	6	7	5	4	3	10	9	9	6
TTTAGATATGGCATAA	alt_2069_reverse	34	47	36	27	39	37	46	32	43	19
GTGCTGCGCCTCATCC	ref_1105_fdr	122	41	181	161	44	124	49	107	40	143
AGCCCTCAAAGTCCTT	ref_1105_fdr	18	10	19	17	8	21	9	9	6	11
GTATGAGGCGTAAGTA	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGCCTATGATACA	ref_1105_fdr	34	10	35	34	8	48	21	23	14	30
TTTATCGAGGTCAACT	ref_1105_fdr	27	2	30	27	10	21	2	22	9	20
ACGACGAGCACGAATT	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
CATGGCTTTCTTCCCC	ref_1105_fdr	77	32	76	66	25	50	27	66	21	63
AAACCTGCGCTACATA	ref_1105_fdr	30	5	34	23	10	30	10	23	9	18
GGTACACGGCTCACAA	ref_1105_fdr	4	0	8	1	0	8	1	11	3	6
TTTTTGGACCTTTGTA	ref_1105_fdr	191	74	237	177	55	187	59	133	82	174
CACAAACTAGGCAATA	ref_1105_fdr	20	6	39	15	14	27	5	32	8	23
ATTGTGTTAGACTTCA	ref_1105_fdr	25	8	33	32	8	27	8	15	7	32
TTTGCAAGTTCTCTTG	ref_1105_fdr	73	29	96	63	18	84	27	72	30	76
TGGGTAGTCTATACAC	ref_1105_fdr	93	29	144	110	26	114	33	94	37	94
GTGTTCCTTAGATCGA	ref_1105_fdr	48	17	74	62	17	46	21	59	19	53
TGAGCTAAGTATAGAG	ref_1105_fdr	159	47	221	184	49	166	53	157	59	172
GTACAACGGTTAACAG	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
AATCGTTTAGACAGCG	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCAGTCCTCTCGG	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
GGACATGGTCAAGGGC	ref_1105_fdr	74	23	77	80	24	70	21	67	17	56
TTCTAACTTTCCTATT	ref_1105_fdr	43	7	43	31	12	31	15	29	12	26
TGTACTTGTTGAGTTC	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
TATATTTCGAATTAAC	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGCGATCGTTTGA	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCTTCTCTGATTA	ref_1105_fdr	365	139	447	395	118	333	126	343	119	354
TACGGCCTTATCATAC	ref_1105_fdr	36	12	46	52	14	29	11	47	16	33
GTTCAAAACAATCTTT	ref_1105_fdr	95	29	126	94	27	100	25	95	23	96
TGGGGATCATAATGGA	ref_1105_fdr	177	47	217	170	57	216	52	175	71	180
GCTGTAGAACATTCGT	ref_1105_fdr	74	24	80	62	18	60	29	71	18	55
TTATGGCGGTACGGGC	ref_1105_fdr	30	3	33	30	7	35	5	22	4	29
ATCCACTTTATTAGCA	ref_1105_fdr	128	40	127	101	38	79	52	104	43	86
CCCTATCATTCAGATA	ref_1105_fdr	31	17	42	46	3	37	11	34	13	42
CGAATTCGCGGGGGAA	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
CCATAATTCTGAGACG	ref_1105_fdr	137	54	163	167	55	120	47	127	68	136
CACCCCCTTTAAAGCC	ref_1105_fdr	131	60	124	130	51	91	83	106	59	96
AGCACACCTTTATAAT	ref_1105_fdr	218	57	249	220	83	162	86	229	61	204
TCTCCTGGTCTTATGC	ref_1105_fdr	32	10	43	20	15	33	16	33	8	25
TAATTCGTCCCAGGCC	ref_1105_fdr	1	0	7	5	1	3	0	4	0	3
TCCAAGGACTTTATTT	ref_1105_fdr	14	6	32	28	8	9	4	15	7	22
CAATGCGTTGCTATTC	ref_1105_fdr	62	22	74	60	12	59	20	67	14	66
CCGGTGTCCTCTCGTC	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTTGCTTTGGGT	ref_1105_fdr	70	20	88	94	23	77	27	75	22	69
GCTCATTATGAATTTA	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
CTGTACTTGTTAGATC	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTGTCACCGTGTC	ref_1105_fdr	300	91	384	296	80	328	97	285	125	287
CTTCGTGTCCCTCCGA	ref_1105_fdr	40	19	60	39	9	36	15	28	12	22
GTTCGGTGTCATATTT	ref_1105_fdr	176	58	261	220	46	172	59	197	58	160
TTGGGGTTGTTGTGCG	ref_1105_fdr	95	34	138	136	35	92	30	98	46	102
GAACAACTTTGGGCAC	ref_1105_fdr	19	3	17	22	4	23	7	27	6	20
AGCCATTCTTTGATCT	ref_1105_fdr	98	35	98	90	25	83	27	75	51	108
TTGTGGTCTTGCGTCC	ref_1105_fdr	97	43	148	152	35	129	33	104	50	104
CTTCTCGCGCGTTAGT	ref_1105_fdr	16	2	17	14	3	14	4	15	4	14
TATTCTTTATGGTTTG	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
TAGATTATGTTGTCGT	ref_1105_fdr	55	22	67	54	15	63	14	52	16	59
AGTTGCGGCTTTGACA	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
GAACGCGATATCACAC	alt_1105_fdr	53	14	85	41	19	54	19	61	13	45
ATTCACTTCATCAAGG	ref_1105_fdr	347	76	403	395	83	351	87	328	105	290
TGTTGGTTCGCCCCAT	ref_1105_fdr	21	7	29	23	9	24	5	27	3	32
ATCATTCGACCTGTCA	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
CATGTCACTAGGGACT	ref_1105_fdr	55	14	71	43	10	56	12	44	21	45
TTGACACGAACGGACT	ref_1105_fdr	131	41	150	108	42	131	59	123	34	110
CATCCGTAGTGTATGC	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCGAGAGTAGCCG	ref_1105_fdr	140	51	215	155	51	185	47	139	45	143
GTCAGTTCCGTCCTCT	ref_1105_fdr	71	36	92	84	22	60	32	85	33	88
TGTGGGTTAATTCTGT	ref_1105_fdr	29	6	40	35	14	36	9	28	13	21
TCACCATCGAAGTCTA	ref_1105_fdr	88	33	111	108	31	83	29	92	37	95
AACACGGTATCGCTCG	ref_1105_fdr	157	38	219	176	56	159	43	159	40	177
CTTCTTTGTCGGGTAT	ref_1105_fdr	48	11	52	35	12	33	16	28	12	31
TATCTCTTCCTCACTT	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
GTCAGATACTTGGTTA	ref_1105_fdr	51	9	67	58	12	38	10	38	33	32
TCCCTTTTTACGGTAG	ref_1105_fdr	40	11	52	58	12	47	14	34	16	36
TAGCTCCTGCTCCGCT	ref_1105_fdr	27	8	20	12	2	14	5	12	4	13
AAAAGAGTTGGTCGTT	ref_1105_fdr	108	29	129	146	20	110	31	116	22	105
TATTATGTCTTTCCTC	ref_1105_fdr	8	0	11	4	2	15	1	3	2	3
GTGGGCGTCACCTCTG	ref_1105_fdr	119	46	186	135	37	147	63	123	50	124
TCGGGACGGTGCATGA	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
TGACAGTGGTATTAGG	ref_1105_fdr	208	59	272	212	79	225	47	235	56	189
CGACCGACCTGAACAG	ref_1105_fdr	145	40	222	168	53	150	45	138	40	129
TTTCTTGGCCGTCCCT	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
GTACTTTATGGACATG	ref_1105_fdr	76	32	114	91	23	97	32	85	31	72
GAGACTGCACGAGGCC	ref_1105_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTCTCAGATCCTA	ref_1105_fdr	46	24	60	66	14	42	10	42	25	41
CGTATCCAGGCCGCTA	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GTCGGAAAGTTGCTTT	alt_1185_missing	35	64	46	46	87	39	70	41	98	45
TTAGGCTCCCCATCGG	alt_1185_missing	11	7	4	5	7	7	15	3	18	1
TATTCTTTTTCGGGCT	alt_1185_missing	136	137	101	108	179	101	183	105	172	93
CTCAGAGCGCTTCGCA	ref_1185_missing	20	26	20	19	28	9	28	12	35	18
CCCCAATTACCGCTGA	alt_1185_missing	6	8	4	11	20	10	12	5	13	5
TTAAAGGACCACTATT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
CATATCCAGCAACCGT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GCCGTATAACGCGAGG	alt_1185_missing	47	88	48	36	80	41	68	30	67	44
TAACCCCCTTTGTATT	alt_1185_missing	64	151	91	79	131	66	163	69	160	65
GACAATGTTCCCTAGC	alt_1185_missing	8	22	8	14	27	3	14	11	30	10
TGGGAATAGGCAATCT	alt_1185_missing	5	6	1	3	2	5	6	3	6	1
TGTGGGTGATAACCTC	alt_1185_missing	8	12	6	6	12	5	15	7	13	4
ATTATTAGCCATGATA	alt_1185_missing	56	96	52	58	86	56	124	44	115	51
GGCGTAGCGTACGAAT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
ACTGTGTTGGCTGTCC	alt_1185_missing	10	12	10	4	15	14	11	8	15	6
TGACTCCAATGTTGTC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
TAAATTTGCTCATTCT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
CATAATTTTGGTTTAC	alt_1185_missing	8	29	17	26	25	8	21	12	29	15
TTCTTAATATGTTTGC	alt_1185_missing	0	1	0	1	8	1	4	1	3	1
CCCCGCCAGTAAACAG	alt_1185_missing	1	2	1	0	2	1	3	1	4	1
CCAATTCTCTACCTTC	alt_1185_missing	30	40	28	20	34	20	30	22	32	30
AGCTGCAGCACGCAGC	alt_1185_missing	36	65	45	38	68	22	78	29	56	38
AAATGGTATCTCGGCC	alt_1185_missing	32	58	46	36	51	19	49	36	59	35
CTCGGCCTATTACCGG	alt_1185_missing	26	71	22	28	54	39	63	32	64	22
TGAACATTCGCTTCGT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
ATCATCAAACGCTAGT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
TATTTCGTGTTGCGCC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
CGTGGGGACGGTATCA	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
AGGGTTTCTCCCGTAT	alt_1185_missing	62	86	63	55	96	77	95	67	102	53
TGTAATGTCGCCATTC	alt_1185_missing	19	38	22	18	32	19	28	15	39	15
TTTGTTACTTTTCTCT	alt_1185_missing	1	11	8	10	8	3	9	10	8	3
AGGTCCCCAATTGGCT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
CTGTAGTATGAGTAGC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
CCAGAGTACGTACAAC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
TATATGTCTCGCCTGG	alt_1185_missing	4	2	2	9	7	10	8	7	15	2
CCTGCAATGGTACCTC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
ATAAGACTGTCTCGTC	alt_1185_missing	6	21	13	4	18	5	15	8	15	10
ACAGCATGTTCGGTCG	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
AAGTTTTCCGACGATT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
TTGCTTCCTGCGTGTT	alt_1185_missing	148	251	198	125	247	133	284	133	319	153
TGGTTACAGTTCAAGG	alt_1185_missing	17	33	20	19	26	16	27	21	38	15
CCCGATCGCTAGTACA	alt_1185_missing	16	31	21	11	23	9	30	6	43	19
TCCGGATCCGGCCCCC	alt_1185_missing	3	1	3	0	3	2	2	0	0	0
ATTTGGGGCCCTCCTC	alt_1185_missing	0	9	8	3	7	3	7	7	6	5
TGGTTGTGTCCTCGTA	alt_1185_missing	9	17	24	22	16	11	11	12	21	9
CCAACCGAATTTATAT	alt_1185_missing	15	131	27	22	122	37	138	18	143	28
ACTAAGGCTTGGGGTT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
TTGTCGGGCCAACGAT	alt_1185_missing	34	41	22	25	53	29	44	36	33	38
TAAAGTTATAGAATCT	alt_1185_missing	50	74	39	43	91	52	81	43	71	32
GAATCGAGTTGCTAGC	alt_1185_missing	9	10	10	10	8	9	17	8	17	12
GTCTGGCTCGGACTGT	alt_1185_missing	2	8	5	2	13	5	11	4	13	2
AAAAGCGATTTAATTG	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
AGAACGGATCACCCTA	alt_1185_missing	32	62	41	22	49	35	50	26	64	31
CCTGTAGCCATCCTCC	alt_1185_missing	3	10	1	6	12	4	14	6	8	4
GTGGCATTGCACGATC	alt_1185_missing	0	4	6	1	4	2	2	4	9	1
TTTTGCTAGCTCGGGT	alt_1185_missing	15	30	23	17	39	16	29	20	40	15
TATTCTTGGGGTCGCT	alt_1185_missing	2	2	4	4	3	5	5	4	3	4
TCTATTTCCGCTTCCC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
AGCCTCGGCCTCCGGC	alt_1185_missing	7	14	5	9	8	5	9	9	20	6
TGTAATGTCGCCCGAC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GTAATAGCGCATCGAT	alt_1185_missing	24	73	38	27	65	30	70	27	48	34
CAGCTCCGGCACTATT	alt_1185_missing	3	6	2	4	5	1	5	2	3	6
AAAGTAGGTATTCTTT	alt_1185_missing	16	16	31	10	34	11	24	17	25	17
TTCAGTCCGTACATAG	alt_1185_missing	0	1	0	2	6	0	3	0	2	0
TGTTCATTGGCGTCTG	alt_1185_missing	11	11	9	9	34	20	32	15	25	25
CGGCAAAGCTGTGGAA	alt_1185_missing	9	15	11	14	12	5	29	8	24	6
CTTAACTGTGCCTTCG	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GTAATTTCCTCTTGGG	alt_1185_missing	20	39	27	20	43	17	27	19	25	19
ACGCATCCGGCTTACC	alt_1185_missing	10	30	18	18	51	21	56	20	48	6
ATCGGCCCCCACTCAA	alt_1185_missing	1	2	3	0	9	5	2	4	6	5
ACAGAGGTTACTCACT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GTCTGACTATCTTTAG	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
ACGCCTGAAGGCGTTC	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GATATTCGCCTCAAGA	alt_1185_missing	1	4	3	9	3	6	12	4	18	5
AATTTGCAATCGCTGC	alt_1185_missing	11	19	16	9	13	18	13	14	25	8
CAACTGGCCTGTACCG	alt_1185_missing	14	24	7	6	6	12	13	5	16	5
TTGAGCATTGGGTAGC	alt_1185_missing	2	6	1	2	4	0	12	2	5	2
GCTTTCTAGTACCGAC	alt_1185_missing	13	25	16	11	31	9	19	16	20	12
CCTTCTCTTTCTTACA	alt_1185_missing	25	70	40	21	55	30	66	32	61	23
TGCTTCACATTCTAGA	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTTCCATTTTTT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GATTAATTTAAGTCTC	alt_1185_missing	15	25	15	20	22	11	32	8	25	11
ATTTCTTGGCACGTTT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
CGTGGCTCCTCCAAGA	alt_1185_missing	138	212	140	127	199	112	201	97	212	90
AGCCTGTTAACCTCTT	alt_1185_missing	15	30	20	22	28	13	35	8	24	9
AAAGGCAACCTCCTTA	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GTCATCATTGATTGCG	alt_1185_missing	19	25	29	15	41	14	36	16	34	15
TACGATCCTTGCGTCA	alt_1185_missing	0	9	4	1	5	4	6	3	4	5
AGGGTCCGCGATCCCT	alt_1185_missing	6	9	9	2	8	5	14	2	10	3
TAGACTGCATAGATCC	alt_1185_missing	3	24	8	3	11	9	9	8	9	5
TTCCTCCCTTGCAAGT	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
CTTGAGTGCGTTTATA	alt_1185_missing	25	59	36	23	80	32	78	19	56	18
GGCTGATCCTTGAACG	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
GCGAGTTAAAGTTTCG	alt_1185_missing	0	0	0	0	0	0	0	0	0	0
ATTTCGGTCTCTGGTA	ref_4264_RC	44	24	38	70	23	37	34	37	35	28
TCTCGCACGAGGAGTT	ref_4264_RC	40	29	66	54	18	37	26	43	27	31
GCCATATGTCTATCAG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CTCGTCGGGCCTGATA	ref_4264_RC	19	13	12	12	10	12	14	12	18	12
ATGCCTGACTGGTGGA	ref_4264_RC	48	21	54	46	36	37	30	31	37	32
TTAGCACTCACATGCT	ref_4264_RC	7	19	11	10	10	4	15	9	12	10
AGGACGTACAGTACGA	ref_4264_RC	20	7	27	19	17	12	16	16	13	8
TATTTCGTCGGGTTGA	ref_4264_RC	13	8	11	8	13	15	8	13	7	9
TAGATTTTCGCAATAG	ref_4264_RC	64	47	54	72	59	74	57	62	43	67
TACATGGGGGCTCACG	ref_4264_RC	73	59	113	84	55	79	59	75	50	79
TTTGTAAGGCCTCCTG	ref_4264_RC	182	126	216	201	127	168	142	154	150	199
TGCTGCACCCTTCGCC	ref_4264_RC	22	15	20	16	18	13	17	14	17	29
TCACACTACTTGTTGA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
ATTCCAAGCTCAATCG	ref_4264_RC	8	6	21	17	8	5	8	18	5	11
TATATTCACCAAATCT	ref_4264_RC	136	84	156	118	85	105	81	81	82	95
TACGCCTACTACCCAC	ref_4264_RC	39	66	76	82	72	61	52	56	50	50
CATGCAGAACGTTTTT	ref_4264_RC	10	4	2	3	2	4	1	11	5	4
CATCTGCTTTTTTAGC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GAATTTGTAGTAGCAA	ref_4264_RC	73	53	86	68	39	60	62	68	62	62
GGCCCCGTTAAGTGGG	ref_4264_RC	10	15	25	8	14	17	12	21	16	17
GCGGTTACTGCTTGGT	ref_4264_RC	18	5	18	13	7	26	8	11	6	9
GGGTCTCATAGAATTA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
AGTTTCTCCGGTAGGT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TTTGAACCGCATTTTA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TGCCCATATTTGTGGA	ref_4264_RC	4	2	4	7	9	4	5	5	1	4
CCGAGAGAGGCACATG	ref_4264_RC	54	29	48	45	27	57	29	43	33	32
CTTAGGGTGTTGGTCG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
ATCCATCCAATCGGAC	ref_4264_RC	105	85	118	96	87	81	66	71	82	72
TGGGATTAGTTTGTCC	ref_4264_RC	21	14	22	15	14	22	9	19	14	23
GCCCGTGTTAACTTTA	ref_4264_RC	37	45	47	53	36	58	39	45	33	43
TGGCAAAACGAAATTC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CGAGGTCATCGTACAA	ref_4264_RC	403	266	443	379	304	380	308	388	288	351
TGTGCTAGGCTAAACA	ref_4264_RC	19	16	29	23	15	23	24	20	28	24
TTTTAGGACCGTCAGG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
AGGGAGGTCCCATATG	ref_4264_RC	16	15	18	16	5	15	14	10	11	10
GCGTATTAATGCGGCT	ref_4264_RC	79	69	96	94	52	71	52	92	63	97
CTAGGAATAAAGCGCC	ref_4264_RC	219	170	242	200	178	219	187	205	166	225
GCCCAACATTCAGTAC	ref_4264_RC	4	10	7	5	6	5	11	7	6	9
CAGCCTTGTTCGCGTG	ref_4264_RC	45	57	41	63	58	50	40	49	55	54
TTTTTTGGATGTAATG	ref_4264_RC	25	27	28	28	25	24	25	30	24	31
TAAATATTGCGCCTGT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TCGTACTGGAGCTCCC	ref_4264_RC	18	16	16	22	11	12	16	11	19	12
AGTCCATTTCCCTTTG	ref_4264_RC	19	10	21	23	23	19	10	20	24	15
CCCGTGTAGCCGAGTG	ref_4264_RC	5	5	11	10	2	3	2	2	3	5
TTCATTTATAACGTCG	ref_4264_RC	7	4	7	8	8	6	8	7	10	8
AACTCGTGTTTCCTAC	ref_4264_RC	134	115	178	132	134	140	112	148	116	136
TGTTCTCTTCCTGCTG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CAGCATAAGCGTTGCG	ref_4264_RC	49	30	56	36	35	41	37	41	38	47
GAATGGTTGTCTCTGT	ref_4264_RC	50	44	63	53	30	46	49	38	31	45
CTCCAATCATTCCTCC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TCCGCGATGCGGAGGG	ref_4264_RC	21	10	17	33	11	21	17	22	21	10
TTTTATATACATCGCG	ref_4264_RC	6	2	2	5	5	3	3	3	7	5
ATGTTGTCTATCTTCT	ref_4264_RC	58	64	102	83	43	81	51	64	47	79
CGGCGGTCAGTATCCT	ref_4264_RC	39	42	35	19	74	38	69	39	54	19
GTTTGTCGGCTTGCCT	ref_4264_RC	49	54	85	69	38	61	54	64	60	70
TAAGTGGTGCCCTCTG	ref_4264_RC	17	9	21	14	11	10	5	13	16	13
GTGGACATCAGAGGAG	ref_4264_RC	39	27	42	32	32	53	27	36	22	48
GCTGACTTACCTGGTT	ref_4264_RC	3	11	0	2	15	0	11	1	23	1
TGAAGGATCTTCGAAG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TGACACCGATTCTCAC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GGGTGTCCGGTCGGAT	ref_4264_RC	55	24	62	56	31	42	31	53	31	51
AGCCAAAAAGGTTCTC	ref_4264_RC	35	32	37	42	29	29	23	29	23	21
GGCGTAAAGTACCCTT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
ATGGTGAACCTACGTA	ref_4264_RC	171	111	200	167	133	197	125	175	126	170
ACTATGGGCCTCCTTG	ref_4264_RC	56	50	68	38	40	39	26	56	57	37
CTTCCACAATAGTGCT	ref_4264_RC	82	66	130	83	74	111	80	88	78	97
ACCGATTTCTAGAGTG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CCTTCAAGCTCTTTCT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
ACGGCCTCTTACCCAG	ref_4264_RC	81	61	102	74	69	78	57	66	69	64
TTACTGTCTTCCGAAT	ref_4264_RC	45	31	52	43	33	45	35	30	44	51
TACTTGAGAGCACTTT	ref_4264_RC	86	45	96	89	44	84	51	63	56	74
TACATTTCAGAGATGG	ref_4264_RC	77	43	107	96	35	79	32	61	60	69
CTTAGCAGTGATCTGG	ref_4264_RC	5	3	7	7	4	1	8	5	4	4
AATATACTCCTGACTA	ref_4264_RC	106	79	115	114	80	114	65	94	87	93
ACTTAATAGTGTAAGT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GTGCGCTGCTTCATGC	ref_4264_RC	9	1	5	3	5	8	6	6	4	6
AGCTAGTTTCCAGTTT	ref_4264_RC	75	55	81	83	57	70	59	74	64	82
TCGCTGGCTTCTTGTA	ref_4264_RC	106	77	144	114	67	105	85	101	79	104
GCCGGTGATTAATGAC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TGTTCAATCAAGTAAC	ref_4264_RC	36	18	51	36	34	28	41	22	30	32
GCCTCCTCGTACTGCA	ref_4264_RC	26	13	39	24	17	24	15	20	15	22
TCGGTGTGGGTATAGT	ref_4264_RC	160	125	192	189	117	165	134	145	157	146
CCCGTCGCCAGAGCCG	ref_4264_RC	60	32	45	54	36	43	38	31	45	41
GATTACTGAACAGTAT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CGTTCGGATCCGTTTG	ref_4264_RC	22	16	41	22	24	21	18	27	20	23
TTAAGTTGACCACTTT	ref_4264_RC	23	14	30	27	19	28	7	21	23	27
ACCAGTACAGACGGAT	ref_4264_RC	49	50	54	54	39	52	35	51	76	31
TAGCAAGTGCGCGCGG	ref_4264_RC	59	42	92	77	49	76	42	50	64	67
GTTGTATATGGCTACC	ref_4264_RC	68	41	67	64	34	51	40	62	39	50
TTTGGAAGTTCCTTTG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TCAGTAGCCCCCTATT	ref_4264_RC	10	12	16	29	19	18	11	10	13	20
GAAACGGGCTGTCCCC	ref_4264_RC	46	32	50	47	16	31	36	39	29	33
ACCCGACGTCGTATCT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TCTCCTTGCGTTCGAT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TTGTGTGCGAACCTTA	ref_4264_RC	5	1	2	3	3	6	4	2	5	5
AGCGCACTAATTTGCA	ref_4264_RC	79	39	72	58	32	54	28	56	38	62
TCTGCAACAGACTCAT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
ATCCGAGGTGCGCAAT	ref_4264_RC	6	0	0	6	0	8	5	0	2	0
GATTTACGCGCTGCGG	ref_4264_RC	15	13	26	15	10	11	8	17	23	18
ATAATTCTCCGGCAGG	ref_4264_RC	95	50	127	95	64	78	67	85	53	109
ATTTGCTGTCTGACGG	ref_4264_RC	43	27	55	39	45	37	40	42	35	47
CGTTGTGCACATTGGC	ref_4264_RC	30	28	38	34	29	22	26	42	25	23
CCCTCAGCCACATCCC	ref_4264_RC	1	6	7	2	4	10	6	5	6	7
ATGTCGCATGCATTAT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GGATCCCTCAGCGGCT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GTTTATGTCTGTTTGG	ref_4264_RC	6	3	11	6	7	13	1	5	5	6
TAGTGCTTTCCGTGTC	ref_4264_RC	14	10	17	4	7	4	6	5	17	5
AGTTAGAGGGACAGCG	ref_4264_RC	4	3	5	5	4	4	5	3	1	5
CAGATTAGCAACAATC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
ATGCGGGTTTTCAGGT	ref_4264_RC	20	9	16	9	10	17	9	16	16	12
AACTGCCCCTAAGGAG	ref_4264_RC	27	20	38	39	30	36	28	33	21	38
CTTGACACTGTGACCT	ref_4264_RC	164	95	176	181	109	168	112	150	105	137
CAGTCAGATGTCCTTG	ref_4264_RC	57	40	55	52	51	48	55	48	53	43
AATTAATGTTTATGCG	ref_4264_RC	20	14	12	22	4	15	16	14	20	16
TATCTAGGACTAACGA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TATACGCTCTCTGGTA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GCATATGTTCCTCTAC	ref_4264_RC	84	70	102	94	83	59	87	92	74	85
ATTGAGTACCTCTGTC	ref_4264_RC	76	60	117	92	52	76	71	85	59	80
ACCGCGGCGCCAGGAG	ref_4264_RC	7	14	11	5	6	4	5	12	10	13
CACGTCCTCTACGTTG	ref_4264_RC	3	3	11	17	9	10	13	7	19	5
GTTCTAGAAGTTTGTC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CACTCCGGATCCGGCC	ref_4264_RC	33	38	33	35	46	25	24	34	38	33
CTACAATAATGTGTCA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
AAAACCTCGTCTGGTA	ref_4264_RC	297	214	348	310	169	275	201	246	225	286
GTATGGAAGTCCGGAA	ref_4264_RC	74	79	119	99	49	88	59	71	68	84
GCCGTGGGAGAATCGT	ref_4264_RC	68	43	98	88	50	68	58	80	44	64
TTTGATTCAATGCTTC	ref_4264_RC	14	8	12	21	14	14	12	17	16	13
CAGATTCATCATGGCA	ref_4264_RC	41	25	54	34	29	33	39	46	27	49
CGTGTATCACGTCTCT	ref_4264_RC	22	32	32	19	22	29	29	35	22	32
GCGGCAGCCCGCAATT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TTCGTTACTCGCTCCA	ref_4264_RC	38	28	60	51	30	45	42	39	35	40
CTCTCGCTCGGCGTAA	ref_4264_RC	31	24	31	36	26	29	18	31	22	27
TTCCTCGACAATGTGC	ref_4264_RC	27	28	23	28	22	34	23	17	12	17
CTGTCGAGACGAATCT	ref_4264_RC	82	55	95	100	51	75	57	81	58	98
TACCTCCCGTCGTGGT	ref_4264_RC	2	68	3	2	57	2	41	0	67	2
TGGAGCGTCGTTACGT	ref_4264_RC	69	49	99	76	40	69	63	60	50	59
TGTCACTATAGCCTGG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TTGTTGCTAACGCCAG	ref_4264_RC	82	53	94	78	74	85	75	94	61	80
TATAAACGCCTTTTGG	ref_4264_RC	5	1	8	4	8	7	8	8	6	16
CTTTGTGTGCATCTCA	ref_4264_RC	99	82	142	158	105	111	75	103	104	95
GAGCCTCATACGAGGA	ref_4264_RC	2	2	4	2	5	4	2	6	5	6
ATTCGGCTTGCTCCGC	ref_4264_RC	75	55	108	84	44	82	55	68	58	88
GTTTCAAAGAATAATC	ref_4264_RC	5	7	8	10	10	11	10	9	10	8
CACGTAGGTTCTTACA	ref_4264_RC	35	19	58	33	35	38	29	38	21	32
TACTCTGAGTTGGTGC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GTGCCAATGTTGATTT	ref_4264_RC	32	31	22	25	23	21	19	34	21	25
AAAACCTCATCTGGTA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GGGAGTTTATCTGCAT	ref_4264_RC	2	4	1	1	2	0	0	2	1	1
CCGTTGGCATATACTG	ref_4264_RC	89	46	114	100	68	76	87	78	73	55
TAGTGGTCCTTTGCTC	ref_4264_RC	9	10	11	12	8	15	12	9	11	8
ACCTTTTGCTTTATTG	ref_4264_RC	30	23	33	17	23	25	16	36	22	24
GAGGACTATAAGTACT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TGTACGACTTTTCTTG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CCATAATTTGCCTTGT	ref_4264_RC	22	16	36	22	28	22	14	22	31	31
CCTCAGTATCGGTAAG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GAATGCTAAGAGGCGT	ref_4264_RC	6	8	3	12	6	12	4	9	3	7
TTAATACGGCGCTGCG	ref_4264_RC	42	71	39	32	80	32	68	29	76	24
TTGCTCGAAGATCCTT	ref_4264_RC	17	21	29	25	15	25	11	19	23	19
CCTTTGGGTCACTTCG	ref_4264_RC	69	39	73	35	35	44	56	49	61	39
CGCGCTCGCTTCAGAT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
AATTCTTATTGGGTTA	ref_4264_RC	4	3	8	1	1	5	4	3	3	2
GAAGCATCATCAAATC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GACGGGCTTTATCAGG	ref_4264_RC	24	14	18	24	13	20	9	30	11	21
TCACCAATTAGTGGAC	ref_4264_RC	10	10	23	14	6	9	14	9	8	9
AACGACATCACCGGCG	ref_4264_RC	64	27	54	59	31	54	44	44	32	49
TCTTAAATACCGTTCC	ref_4264_RC	14	17	13	12	11	10	15	7	11	15
TTTTAAGGATGGACCT	ref_4264_RC	14	14	23	15	11	11	11	23	15	19
GCGAGTATGCGATTGC	ref_4264_RC	42	21	47	38	39	40	27	39	22	38
TGCCGGTCCAGCGAAC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TCAACTCGGACCGAAA	ref_4264_RC	42	54	42	73	41	46	52	38	44	39
TATAAAACGTCGGATA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TCCTCTCATTTCGCAC	ref_4264_RC	37	30	33	31	28	16	25	37	35	25
ATTTATGGCAACCCAT	ref_4264_RC	1	1	4	10	0	5	2	6	4	5
GTCCTGATAGTTCTAC	ref_4264_RC	5	10	9	13	4	9	8	5	9	5
AAAGGTCCAATTTCAG	ref_4264_RC	155	100	185	148	134	181	121	155	132	149
AGTTGTTACGATGGAC	ref_4264_RC	19	13	36	11	16	24	13	20	16	15
TGACGACCTCTCGGCA	ref_4264_RC	61	49	114	80	46	82	45	66	58	47
CTCATGCTCAAATGAA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TTTATCAAGGGGTCAC	ref_4264_RC	110	79	124	102	77	124	81	103	87	91
TTCTATATATCCAGGG	ref_4264_RC	31	27	35	41	16	37	26	33	21	21
AATCGTGTTCTTACTC	ref_4264_RC	42	35	55	52	40	41	39	43	43	43
GAGGGCGTGTTATGTT	ref_4264_RC	120	81	127	118	93	94	77	96	103	88
TGGCCAGTATTCTGTT	ref_4264_RC	27	16	33	33	16	27	8	13	9	21
GTTTGATTCAGTTGTT	ref_4264_RC	5	7	15	14	12	10	13	9	12	7
GTCTGTGCGTCCTTCG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TGACGTGCTATTCGTT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CTGGGGCATCTTATGT	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
ATTCGAAGTCTATCCC	ref_4264_RC	22	5	20	19	16	18	15	15	14	16
CCGACGCTAAATATTG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CGGGCGGAATAAATTC	ref_4264_RC	15	6	20	7	15	13	6	8	9	10
GGATGCGATGTTGTCA	ref_4264_RC	28	12	33	40	18	32	17	19	19	26
CCACTCCCGCTCCTCA	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
AGATCAACAGACTTGC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TAAATTGGTTTTCAAG	ref_4264_RC	44	29	81	66	40	45	50	44	34	58
ATTGGTTCTCGATTTG	ref_4264_RC	73	81	97	74	50	75	61	70	52	63
TTACTCGTATCGTCTG	ref_4264_RC	3	9	7	12	6	8	8	9	8	10
GCCCGAGCCGCCAATT	ref_4264_RC	49	39	68	60	32	68	28	57	40	50
CTTTGCATGTCCCCAT	ref_4264_RC	17	9	14	15	5	5	4	7	8	4
CGCAGGTTCTTCCGGG	ref_4264_RC	67	40	85	86	49	67	53	84	56	61
TTGCAGAGCTTTCCTC	ref_4264_RC	63	47	78	68	52	52	64	48	47	61
ACGTGTGCGTGTTAGC	ref_4264_RC	11	10	20	16	14	13	18	11	15	16
TAATGTCTATCGCCGG	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
GATTAAGGGCACCGCC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
TGCCGCGACATCCATA	ref_4264_RC	119	111	89	99	99	115	127	127	120	97
TTAGTGTGGCGCATGG	ref_4264_RC	13	2	11	11	7	7	7	6	5	6
TTTACCTGGGGCAAAA	ref_4264_RC	47	21	29	27	23	29	16	25	23	27
TCACTATGGGTCAACA	ref_4264_RC	1	0	0	1	1	4	0	0	0	0
CTTCTGTATTTAGGGC	ref_4264_RC	69	53	67	58	55	59	55	61	52	68
CGTTAATGTCTAGAAC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CCGAGGTTGATTTCAC	ref_4264_RC	0	0	0	0	0	0	0	0	0	0
CCATTAGTCTCGAGTA	alt_5791_new	26	56	46	31	49	24	66	26	57	31
TGTCCCGGACTTACGA	alt_5791_new	0	0	0	0	0	0	0	0	0	0
GCCTTACTGGAGGATA	alt_5791_new	3	1	6	0	3	1	3	3	4	3
GTGACGTTCCTGTTCC	alt_5791_new	30	34	23	20	22	25	33	20	33	34
TTGCACTGCTATTCAT	alt_5791_new	21	21	34	23	27	21	42	24	20	28
CATGGTTACACACTAT	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TGCGGCGATTTTTCGA	alt_5791_new	29	22	17	27	17	25	30	14	25	20
GCGCCATCGCGGGTTG	alt_5791_new	2	6	2	8	7	4	6	4	9	9
GCTCAAATTGCACCTG	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TAGCTCTTGGTGGGAA	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TTTAGTGTGATTTTGT	alt_5791_new	40	37	38	27	49	39	56	29	29	33
AACACCGGCGATTTTT	alt_5791_new	9	22	21	16	25	14	24	21	21	23
TAACCCAGGTCGCTAG	alt_5791_new	19	24	37	28	30	23	24	17	31	33
TGTCTTTAACTCGCAT	alt_5791_new	25	23	18	25	21	22	25	20	18	20
TGCTGTGGAACATCTA	alt_5791_new	98	96	133	68	103	85	116	65	118	78
TACAGGTTCCTCGCAC	alt_5791_new	12	22	18	14	22	18	16	14	14	12
CTAAGGCAAACGTTTC	alt_5791_new	11	18	23	18	20	23	18	13	20	7
TCTTGGTACAGTTTAG	alt_5791_new	22	22	17	16	18	19	26	24	38	15
TAAGCAATGGTTGGCA	ref_5791_new	71	93	116	93	96	79	116	79	139	99
CGCTGGGTTGTTCGCC	alt_5791_new	13	31	10	18	22	13	19	6	18	17
AAAACTCGGGCAGTTA	alt_5791_new	12	14	14	13	17	8	8	15	14	13
GTTGGTTAGCTTTCTA	alt_5791_new	7	6	11	9	12	3	8	8	12	6
TTAAGGGTGCTAAGTG	alt_5791_new	0	0	0	0	0	0	0	0	0	0
AGCTCAAGGGGTAGCT	alt_5791_new	141	125	146	110	148	109	93	82	112	105
CTTCTGCTTAAACGAG	ref_5791_new	0	0	0	0	0	0	0	0	0	0
TTACAGTTGTTCAATT	alt_5791_new	82	78	117	75	83	88	112	78	106	63
CTACTTCATCAGTTAG	alt_5791_new	12	21	20	21	17	10	15	7	24	11
TTCTGAGCTTCGAGTA	alt_5791_new	21	31	23	24	38	27	43	16	29	19
AGGTCATGGTGTGACT	alt_5791_new	12	19	17	8	11	8	21	10	22	22
CGGTGGTGTGGCAACA	alt_5791_new	2	7	4	14	5	5	4	6	5	5
GCTGGGCTCCGTCCAT	alt_5791_new	0	0	0	0	0	0	0	0	0	0
CTACAACGCGCTGAAC	alt_5791_new	18	20	23	10	29	15	37	24	29	11
CCGTTCTCGTTTAAAT	alt_5791_new	21	37	17	23	40	26	34	17	42	16
TGCTTACCTGACCAGA	alt_5791_new	4	30	5	10	26	7	25	1	24	5
GTACTTAATATAGCAT	alt_5791_new	0	0	0	0	0	0	0	0	0	0
CTTTTTGGCTTTCTAT	alt_5791_new	2	7	9	5	8	6	7	7	12	4
TTTTCATATTGCTTAG	ref_5791_new	74	104	100	89	91	70	74	80	112	86
TGTCGGGCCCAATTGG	alt_5791_new	99	95	86	87	124	91	100	85	126	83
CAGTACGTGCAAAGTG	ref_5791_new	110	155	142	102	169	127	153	120	158	87
GTTTGGGAGCCCTCTT	alt_5791_new	22	23	28	25	16	19	21	17	18	15
GCACTGCCACACAGGC	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TCAGGTTACTTATTAA	alt_5791_new	8	8	2	4	12	2	8	6	7	3
TCCTAGTTACAACTTT	alt_5791_new	0	0	0	0	0	0	0	0	0	0
ATTTTGCTTTGATCCA	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TCTCATATGCACGGAC	alt_5791_new	0	0	0	0	0	0	0	0	0	0
AGTATCTAGCTCCGTC	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TGCCCAATGATCCCAT	alt_5791_new	80	97	94	92	98	63	90	72	84	69
TCACGAGATATAGCCA	alt_5791_new	45	44	60	49	47	36	27	49	40	40
GGTAAACATTATGAGC	alt_5791_new	16	22	21	27	19	13	18	18	14	20
TGGTTCTGGGCCGAGC	alt_5791_new	0	0	0	0	0	0	0	0	0	0
GTGCATTCTCTCTCCT	alt_5791_new	27	23	23	26	23	26	19	22	23	23
GAAGACTGTGGTCAGA	alt_5791_new	15	6	14	12	12	5	8	9	11	14
TTTGATTTCGTTTCAT	alt_5791_new	23	29	25	32	25	25	27	22	22	37
GTTATCTCGTGTTTCC	alt_5791_new	19	14	14	14	14	23	19	19	23	13
GCCCCTGAGATGGTCT	alt_5791_new	32	36	43	40	43	36	44	44	54	49
CTCTGCTGGATGGCTA	alt_5791_new	49	44	45	42	44	40	37	32	51	46
CATGCTGATCAGAGAC	alt_5791_new	15	26	20	19	19	14	19	10	13	8
CAATTGGGCATGGTAC	alt_5791_new	132	136	160	128	159	110	145	125	109	105
CGGACCTTTTGGCAGC	alt_5791_new	38	32	63	37	32	36	35	39	51	27
GCCTTGTGTACTGGTC	alt_5791_new	16	11	19	8	23	14	22	20	29	14
TCCTGGCATTTCGTTA	alt_5791_new	0	0	0	0	0	0	0	0	0	0
GTGGGAACATACTCGC	alt_5791_new	6	8	6	7	10	3	7	7	4	5
ATAACTAACCGGATCA	alt_5791_new	297	268	345	283	312	293	265	322	324	265
TACGTGTTTGTCAGTG	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TTCGTCGTCTTAGAGT	alt_5791_new	0	0	0	0	0	0	0	0	0	0
TTTTAGATAAAGCGAC	alt_5791_new	0	0	0	0	0	0	0	0	0	0
AATAGTCGAAGTTTAT	ref_5791_new	116	153	137	123	190	124	199	113	186	77
CGGCCCTACTCTTCAC	alt_5791_new	7	16	17	17	18	10	14	12	6	14
CATCAACTTTTTGTGA	alt_5791_new	158	158	171	166	204	137	171	134	196	149
ACGACGTTAGAATTGC	alt_1430_negative	32	33	40	23	42	35	32	26	23	28
TTCTCCATTTGTGTCT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AGCTTGATCATCTGTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TCTGTTTGTTCAGCTC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AGTATTACCTGGAACT	alt_1430_negative	3	2	7	1	4	2	2	2	3	2
TCATCCGAGACTCTGT	ref_1430_negative	23	34	26	25	25	23	17	29	21	20
ATGGTATTGCCCTATC	ref_1430_negative	103	98	121	89	110	104	94	89	102	95
TATGGTTAGTTTTGTT	alt_1430_negative	66	59	76	63	64	51	79	72	53	44
TCCTCAGCGCGGCCGG	alt_1430_negative	21	17	15	29	19	20	14	18	19	20
GGAGCCGCCAAGGTAT	alt_1430_negative	7	10	9	10	9	19	12	24	10	9
TATTAAGATAACTTGA	alt_1430_negative	60	70	69	63	58	67	56	52	49	68
ACGATGCGACAACTCT	alt_1430_negative	17	13	18	20	10	10	16	13	25	14
TCGCTATTAGATTTGT	alt_1430_negative	25	34	38	39	46	29	34	25	34	18
TCAGCTCGGGAGGTCT	alt_1430_negative	16	19	24	12	18	15	18	12	23	18
GATGTCTTGCGAGTTC	alt_1430_negative	16	9	21	16	23	15	27	15	21	19
CGCCTTTGCTGGTATC	alt_1430_negative	0	3	0	0	3	1	4	0	1	1
GTTGGCACAGTTCACG	alt_1430_negative	14	17	17	16	11	19	18	11	25	9
TCGTTGCTTCACGGAT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CGGGCATGGCTCGTCA	alt_1430_negative	4	2	0	3	6	3	1	1	2	2
TATTTTTTATCACCCG	alt_1430_negative	42	43	74	59	57	51	58	54	47	50
CGGCGTCGGACACGGC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AATATTTACTGGAAAT	alt_1430_negative	17	12	17	8	9	9	14	9	13	11
TGGCTAATGTTGACAA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TGGTTCCTCCTTACCT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GCGCTAGGTGAAGGTG	alt_1430_negative	16	27	14	14	24	10	16	14	29	25
GGGCCCTAGTCTAGTA	alt_1430_negative	10	13	23	10	12	9	11	14	10	7
TCAGTTCAAAGCGATT	alt_1430_negative	7	20	8	8	10	18	12	8	16	14
TAACCATTCGACCCGC	alt_1430_negative	0	1	0	2	1	0	0	0	0	0
TGTAGGTACCGAGCAT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TCCGGCAGGTACCAGT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CGTTACTTCCCGCTAA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
ATAGGTTGCCCTAATG	alt_1430_negative	3	5	3	5	2	2	1	4	5	2
GATGACTGGAAGGCTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CTGGATATGTCAACCG	alt_1430_negative	11	16	19	16	27	15	17	21	17	12
TTTTCGGTAGGCCTCC	alt_1430_negative	6	6	6	6	4	14	4	3	5	6
CTGAGCCGGTTGTTTA	alt_1430_negative	35	85	34	37	72	24	82	38	76	55
GCTAAATCTCCACTGA	alt_1430_negative	8	9	9	8	5	11	9	9	9	7
CCCCGGGGTGAGGTGT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AGATCATAAAGTCGTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GGGTTGGTGAATGTAT	alt_1430_negative	8	7	9	8	5	13	6	8	8	7
ACCAGGCGTAAGCGCT	alt_1430_negative	31	32	40	38	36	26	46	32	40	31
TAGGTTCCCCAAAAGG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AAGGGGCTTGCCTCTA	alt_1430_negative	46	42	58	65	51	44	35	38	36	56
AGATGACAATCCACAC	alt_1430_negative	27	51	33	36	47	21	45	20	43	20
GTATTTTCCGTCTAGT	alt_1430_negative	19	24	11	20	15	14	24	10	30	14
GCTCAGTGGTACCTTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CCGAACCGTCTTTACA	alt_1430_negative	15	39	22	24	41	28	38	18	38	17
TGACCCACGTCCACGC	alt_1430_negative	3	3	4	9	2	4	2	2	4	3
TCATTGCTTATAGATT	alt_1430_negative	5	6	6	5	6	2	7	1	10	5
TCCATCACCAACGTAG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AGCCCGACCGTTCCAT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AGTGTTTGGTATTATA	alt_1430_negative	19	34	31	28	24	30	26	17	43	16
GGGCAGCTCCAATCCA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CACGGTTTGGGGGTCG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CATTATAGGGATTATA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CAAGTGTGGCCAAAAG	alt_1430_negative	14	15	25	20	15	14	18	20	23	18
ATTGCAGGCAGTGTTC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GGGACCATAAGATCCG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AGCGTTGGCCCTATTG	alt_1430_negative	13	26	11	15	10	9	27	11	16	8
ATATGCCATTACATTG	alt_1430_negative	12	22	12	24	27	14	15	24	24	16
TTTCGGAAAGTAAGCT	alt_1430_negative	121	122	147	142	93	124	120	65	129	112
CGTGTCAATTTTCCGG	alt_1430_negative	17	16	26	9	13	18	17	12	14	10
ATTCTCCCACCCTAAT	alt_1430_negative	17	17	15	12	14	12	8	11	13	11
CACTTTGGGATCTTCT	alt_1430_negative	12	22	22	35	28	26	21	15	28	20
GCTTAGACATGAGGTC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GGTAGTCACTTCAACA	alt_1430_negative	49	38	54	50	60	41	34	45	48	37
TACGGAGTCTCTAGCG	alt_1430_negative	12	18	13	17	11	14	17	7	11	13
CTCGGGGGCTGGCTAT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GCAAAGTCGTCTTATA	alt_1430_negative	4	4	12	8	8	4	7	6	10	9
TGTTTATCACTGATTA	alt_1430_negative	16	6	12	11	14	6	21	7	10	15
AAGAGTAATTGATTTC	alt_1430_negative	75	68	88	76	64	76	72	51	74	79
GCAAGACCCCCCGCCA	alt_1430_negative	56	49	65	46	49	43	54	47	76	40
GTAACGACATCAAAAT	alt_1430_negative	156	128	167	144	101	127	158	134	143	125
ATCCATTTTGCTTGTT	alt_1430_negative	104	102	134	99	88	85	83	88	105	94
GCGTTTCGTTGTGGTC	alt_1430_negative	66	86	94	80	65	74	72	49	81	46
AACTCTTCAAGTGAAT	alt_1430_negative	51	38	43	48	39	49	55	29	52	37
ACAAATACGTCTCTCT	alt_1430_negative	18	18	22	31	33	16	30	23	22	23
CTTTGCCTTTTAGGTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TATTTCTACGGTTTTT	alt_1430_negative	11	3	6	1	5	6	7	6	11	6
AATCCTCGGAGGGGGA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GGCCTCTGGGTGTGGT	alt_1430_negative	15	25	32	24	31	20	20	18	33	23
GCAGAACTGCTCTTAG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GAACTGAGTTTCTATT	alt_1430_negative	85	114	124	114	107	94	140	91	124	86
TGTAATCAGCCAGTTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TGTCTTTACTGCCTAC	alt_1430_negative	44	48	53	43	51	48	54	41	53	43
GGCTCTACTGTACTAA	alt_1430_negative	22	14	18	14	13	16	16	15	20	19
TTGGCGCAACCATAGC	alt_1430_negative	15	14	12	9	29	5	28	10	20	5
TATTCACCCCGCACTG	alt_1430_negative	10	16	10	10	15	14	13	9	14	10
GCTTTTACATACGCTT	alt_1430_negative	10	7	15	14	11	11	10	8	12	15
TATCAACTTACCTTCG	alt_1430_negative	2	47	4	3	42	3	49	5	41	4
GTTTGCTTAGTTCAGT	alt_1430_negative	25	36	42	37	42	50	37	33	36	31
CAATTTAACTTTTCGC	alt_1430_negative	1	8	2	4	3	5	5	10	8	3
TCCATATACTGACTTC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
ATTTAACACGTGCCTA	alt_1430_negative	5	6	9	7	4	5	18	9	9	3
TCCAGAGGCTCACTTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AAGGTTTACATTTTTA	alt_1430_negative	34	23	28	25	21	22	37	29	27	23
TGCTTATCAGGGCCCC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CTAAAATTGAATGCTA	alt_1430_negative	29	35	42	32	34	41	42	38	39	25
TGTTATAACCTTAGGG	alt_1430_negative	48	47	68	53	43	56	43	49	47	52
GCTCACGCGACGTCCT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GAGACGTAGATCGTCG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AGTTTGCAATAATTCA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AATAGGCCTTAATCTG	alt_1430_negative	58	66	71	62	45	61	68	58	56	58
CGATGGGGTAAAATTG	alt_1430_negative	43	49	46	51	34	59	39	38	38	26
TAAACGGTATCTTGCT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TCATCAACAAGTGAGC	alt_1430_negative	39	36	81	39	45	48	50	44	48	39
ATTGGCGTGAACTTCA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GGTGCACAGTTCTACT	alt_1430_negative	41	50	52	51	53	38	43	41	50	50
TGTTGGTATCACTGAC	alt_1430_negative	25	37	33	23	40	26	42	26	45	28
TCGGTTTCAGACGCGA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TTCCCAAGTTCCAATA	alt_1430_negative	15	16	23	18	19	18	11	13	21	20
TTTGTATTAGTAGTCA	alt_1430_negative	1	1	4	1	1	1	3	0	2	0
TCTGGCCTCCCAGCCG	alt_1430_negative	30	25	28	16	30	18	19	19	17	21
ACCTCTTCCTGGCCTA	alt_1430_negative	34	26	49	48	33	47	32	41	43	37
CGACAGGTGCAATCTT	alt_1430_negative	6	11	8	20	16	5	6	5	15	9
GCGGGGTGATTGCTTC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CTCAAGCAGTCGTAAG	alt_1430_negative	241	292	344	295	328	210	297	256	361	217
TGTGGGTATATTGCGA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AACGCGTACGTATACT	alt_1430_negative	167	167	149	133	170	133	180	118	181	127
TGGTGGTATTGCTTAA	alt_1430_negative	5	5	11	7	4	6	6	10	8	6
CAGCCCCGATACGATC	alt_1430_negative	93	84	147	116	93	111	90	97	96	94
TAATGAAGCTCTCTTA	ref_1430_negative	15	14	25	11	12	6	12	16	18	12
TGGCTGCAGTAATGTA	alt_1430_negative	8	7	8	15	13	22	9	13	14	13
TCGTAGATAGGTAGTG	alt_1430_negative	9	7	8	3	7	6	8	13	10	8
ACTGGATCGGGTGTTT	alt_1430_negative	19	29	30	19	30	24	36	24	36	21
CAAGGTACCGTTAGAA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GCCTTAAGGCACACCA	alt_1430_negative	4	6	17	14	5	6	6	14	7	13
TCCCCTAGTTTCTCGA	alt_1430_negative	13	18	15	12	10	14	13	17	19	23
ACTAACCTCTTCCTAG	alt_1430_negative	47	64	47	55	48	45	60	46	69	38
TATACAGCATATTGCA	alt_1430_negative	1	0	1	0	0	0	0	1	1	0
ACTCGGGGGTCCTCCA	alt_1430_negative	9	13	23	18	21	19	18	21	16	11
GCAAGCTTTCCTCCCG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
ACGATCAAGGCGACCG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CCGATAGTTCCCAGCG	alt_1430_negative	12	58	9	12	60	10	52	10	50	7
CACACTGGCATACAAT	alt_1430_negative	12	10	20	15	9	15	14	14	14	9
GGTTCATTACTGCCTT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TGAGAACTCAGACAGC	alt_1430_negative	33	29	37	41	25	28	42	38	38	32
GTATCATGACTAACCG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CGGTTGATCGACCTGC	alt_1430_negative	19	45	20	14	49	11	51	16	57	19
GATGTATTTTCGATAC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AATGTACTCACGGTCT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
CGTCAGTCCCCGCCGT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
ATTTCAGTTTTAAAGT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GCTAATCTGGTGTTAA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TTCAATCAGGTGTGTC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
AAACGAACCATAGCCT	alt_1430_negative	44	44	46	41	41	38	42	42	30	37
GGGTACAGTCGTTTGT	alt_1430_negative	9	9	19	10	6	8	10	13	9	11
TCTAGAAAGTCCCTCG	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
TCGTTACAATATTTAC	alt_1430_negative	13	21	19	15	24	13	16	8	24	22
ATTGTCTTGGGTTTTC	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GGCAACCTCAAGCGAA	alt_1430_negative	62	46	71	69	55	66	45	53	44	45
TATTGTCATAGTTGTG	alt_1430_negative	24	27	30	24	34	17	24	34	30	25
CGAAACGCTTCACTGG	alt_1430_negative	71	60	80	61	73	76	90	66	70	62
CACTAGGTTGCCCTGT	alt_1430_negative	31	52	33	18	65	28	75	15	53	30
AGACCAGGTATTAGTG	alt_1430_negative	11	8	9	11	10	6	10	4	10	11
ATCAATTCGCAGGGAT	alt_1430_negative	8	13	16	4	15	11	9	4	15	7
GAGCTGCTGTATTCGT	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
ATCCTTAGGGACCACT	alt_1430_negative	30	19	19	10	19	15	21	14	19	15
ATTTTGAGCTCGGGCT	ref_1430_negative	150	147	229	155	140	163	140	119	148	124
GTGCACGTCTCTAGAA	alt_1430_negative	0	0	0	0	0	0	0	0	0	0
GGATGTGTCGGGTTCT	alt_1430_negative	21	32	19	13	10	27	27	26	21	19
AATCTGTCGGTGTGCA	alt_1430_negative	14	16	28	13	10	5	15	9	18	11
TAGCTTGGGTAGTGGT	alt_1430_negative	65	64	80	42	59	54	60	62	58	57
TGGCCATTTCGATGCA	alt_1430_negative	0	4	3	2	10	4	1	4	10	4
TTGTCTGTTTTCCGGG	alt_1430_negative	3	9	16	17	15	6	7	9	10	4
TCTCGGTCTTTTAGAC	alt_1430_negative	20	16	21	14	8	12	13	11	16	9
ATTATCTTCTAATAAT	alt_1430_negative	8	4	4	3	2	2	1	7	3	3
CTCTACAGTTGTGTGT	alt_1430_negative	140	233	166	135	166	124	205	154	239	140
TGCGGATCATGTGAGA	ref_1430_negative	117	114	184	145	103	132	109	105	118	92
GCACTCTTGATCTTTT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
AGAGATTTCCACGGGC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TAGCATTTTTTCGTTG	alt_5061_RC	68	47	66	58	29	39	31	42	46	43
AGCTTTCGGTGAGGGA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TATTTACGCCTTGGAT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CATGCAATGTTCTAGA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
ACCAGTTTGACTCAAC	alt_5061_RC	7	5	3	8	7	1	4	3	8	4
TCTTCGCAATGAGATC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
AGACACTGCGATCTCA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TAGCTATTATGACAGA	alt_5061_RC	27	13	46	33	45	25	23	28	33	31
TGCTGCGTGCCTTCTG	alt_5061_RC	4	10	11	11	1	4	9	10	2	4
CTGTACTTCAGTCGGC	alt_5061_RC	7	10	13	11	7	5	3	12	9	8
TTTATCAGGGCTTACC	alt_5061_RC	7	16	11	7	9	11	16	5	23	5
GCCCGGTCATAGAAGA	alt_5061_RC	2	9	8	9	6	4	4	6	6	5
TTTCTGCGGATTAGGT	alt_5061_RC	4	13	17	10	10	9	16	12	17	12
AGCTCTATTCATCTTG	alt_5061_RC	130	106	147	104	99	108	102	102	119	106
TGTTCGAGTCCATAAG	alt_5061_RC	4	3	9	3	6	3	6	4	8	6
TGTATATCTCGTCGGC	alt_5061_RC	3	2	1	1	1	0	1	3	1	4
TCTGTCCTAGAGAGGG	alt_5061_RC	1	1	0	1	1	0	0	0	0	0
GTAACGAAACATCCTT	alt_5061_RC	195	147	213	185	123	167	126	147	128	147
GTGAAGGTCCCTCAGG	alt_5061_RC	45	19	53	34	36	24	36	45	36	36
CGAATTGCAAAAGCTA	alt_5061_RC	13	9	19	16	11	4	12	11	16	13
TATCAGCTTGAGGTTA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
ATCTATAGCTCTCAGA	alt_5061_RC	13	11	34	17	17	9	16	17	8	18
CTTTAGGAATATAAGT	alt_5061_RC	1	2	1	2	2	0	0	1	0	0
ACTGGGCTGTGATCAC	alt_5061_RC	71	66	77	80	51	69	72	49	52	52
TGGTCGTGTCGAGTAA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GTTGCATTGGCTTCAT	alt_5061_RC	5	7	7	6	6	2	7	8	14	5
AGTTTCCTAGGCTTCA	alt_5061_RC	171	122	199	191	135	143	162	164	154	159
TGGCTACCTCTTTCGT	alt_5061_RC	0	0	0	0	0	1	0	0	1	0
TCGATCACGCTTTCGA	alt_5061_RC	38	45	52	43	32	29	34	29	36	39
CCCTCTGCAACATTGA	alt_5061_RC	108	109	138	107	96	112	95	93	117	93
GTTGTTGTATGTGTGG	alt_5061_RC	44	30	54	32	45	35	41	36	35	35
TATTAGGTCTACTGCA	alt_5061_RC	10	7	7	9	11	10	17	9	4	17
GCTTGGATTCCTTAAA	alt_5061_RC	45	40	37	39	29	28	48	28	41	36
GATCCTTCTTGTGTCC	alt_5061_RC	47	45	94	82	58	60	66	78	44	60
GGTTGGTTTTTTCTCC	alt_5061_RC	11	6	9	17	7	10	8	18	7	11
GTCTACGGCGTCAAAA	alt_5061_RC	69	58	101	78	80	73	69	65	67	75
TGGAACGTCTGTCGGT	alt_5061_RC	76	75	100	108	76	98	78	79	69	70
CGAGTCTTTACTGCCA	alt_5061_RC	16	5	21	12	14	11	14	10	12	9
TTAGAGTTGTACACCC	alt_5061_RC	45	68	51	32	70	54	87	42	85	33
ACCGTCGTACTGGGTC	alt_5061_RC	1	0	1	0	2	1	1	0	0	0
TGCCGCCTACCTCAAG	alt_5061_RC	37	30	26	25	40	19	41	29	37	29
TTGCACTGTTGCGTTC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TGTGACAATATAGTTA	alt_5061_RC	60	49	51	49	40	44	63	36	39	40
CCCTGTTTTTTTGTTG	alt_5061_RC	48	45	56	77	34	43	55	55	36	41
GCGAATGATTGTTTTG	alt_5061_RC	25	28	26	34	25	17	25	17	32	31
CTCAGAAACAATTCGC	alt_5061_RC	8	3	9	4	10	11	17	10	6	4
CGCTCATCTCGATTTA	alt_5061_RC	0	9	10	7	4	8	3	11	5	6
TGTGTTGTGTTGCGTC	alt_5061_RC	6	8	12	11	12	10	4	9	7	5
GGTCTATTATTCCTAT	alt_5061_RC	68	47	73	83	55	48	72	61	63	52
ACTTTAGACGGCCTCT	alt_5061_RC	181	140	209	168	171	167	191	184	169	147
CTCTAACGCGCTATAA	alt_5061_RC	65	39	82	52	49	46	48	63	72	58
TATCAGAAGTGAACGC	alt_5061_RC	21	21	31	21	19	11	26	29	23	14
AAGACTTCGGCATAGG	alt_5061_RC	51	40	68	59	42	44	38	50	39	42
CGCCTTATCGACGCCT	alt_5061_RC	33	32	60	39	40	39	32	34	31	42
TTCTTAGTTTGGAGTC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GTTATGGCCGCGTCAG	alt_5061_RC	11	3	6	12	5	6	5	6	8	5
TGTTAGCTATTATTGC	alt_5061_RC	10	12	24	16	7	15	7	9	12	13
CTTGATCAGTCCTTTT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CAGAATCGGTTATATT	alt_5061_RC	152	118	201	142	104	130	117	160	116	119
GAATACCCTGCTACTT	alt_5061_RC	45	55	74	47	41	34	49	53	53	47
GTCTCCGCGAGGTTCT	alt_5061_RC	5	12	10	9	11	3	12	9	14	10
TTATGTCACTTTAGAT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TGCCCCGAAGCTATTA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CAGTGGGGCTAAATGG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GCCAAGAACCGTTCTA	alt_5061_RC	14	21	16	15	16	12	20	12	24	8
ACATGACGGTGGCAGC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GCACAGCAATCCCCGA	alt_5061_RC	45	45	36	44	44	30	39	25	45	37
TACATGGATTCCCCAT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TACGTCCACTGGACCC	alt_5061_RC	3	10	5	9	11	15	7	6	20	10
CTTCTTATCGCTACAG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TCGGCTCGTCATTGCT	alt_5061_RC	17	12	19	15	16	8	14	12	21	17
AGGAGTTTCTTGGATT	alt_5061_RC	8	4	9	9	4	4	10	3	6	4
TTGTATGTTCAGAATT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
ACTATTTATTGCAAGC	alt_5061_RC	11	13	16	17	10	12	13	12	12	13
CCACGACGGTATAGTT	alt_5061_RC	10	7	10	6	13	7	12	14	10	4
ACGTTCATTGTGCTAC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TAACTTTGCTGGGATC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GTCCACAGCTGTTTTA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GCTTTCTAGTCCGACA	alt_5061_RC	76	71	102	109	60	66	74	58	98	80
TCAATTGTGTGGGGCA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
AGACTGCGAGGTCCGA	alt_5061_RC	18	18	24	14	19	10	12	14	16	14
TAGCAAGCTCTTCTTG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GAAAACTTCATGGCGG	alt_5061_RC	30	20	36	28	16	24	22	20	20	40
TAAGGATGGTCATGAA	alt_5061_RC	46	38	59	55	40	59	57	45	44	43
GGTGTCGCTGCCAGTC	alt_5061_RC	85	66	110	93	78	103	71	82	85	70
AACCCCTTTCTCTCTA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
AGCGTGTCTTTTCATC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GTAGCCATTACGGTCC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TCCCTCCAGATGACCC	alt_5061_RC	1	5	8	4	15	6	9	5	15	3
GCAACGATGCCTAGCA	alt_5061_RC	1	0	3	1	0	0	0	1	1	1
CGGTTTTGACATACAG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TGCGCGAGTTATTCCC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
AGTCGGCCGGGCCTCT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
ACTCGGTTGTGTCGAG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TCTTACATTCCGGCAG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CAATTGTATCGATCCG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GGTGCGGTCGGGCCAT	alt_5061_RC	17	21	27	13	17	20	19	11	16	16
ACAGTCCATCCCTTCT	alt_5061_RC	12	10	22	12	9	12	12	12	5	10
TGTATGTATCAGGCAT	alt_5061_RC	5	17	18	17	14	19	14	13	19	12
GTCCCAGTTTAAGCAA	alt_5061_RC	29	31	34	47	28	32	30	53	25	34
TAATTCCACCGCAAGC	alt_5061_RC	9	4	6	7	2	6	5	13	6	7
TTAAGGTGCCAGAATT	alt_5061_RC	22	16	27	33	25	25	27	19	23	20
GGCCTCCATCAGGCTC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GCTTGAGGTTGTTTTC	alt_5061_RC	17	11	23	12	13	14	11	16	8	12
CAGCAGCCAGGCAATG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TGCGCCTTCATTAATC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TTCTAGCTTGGCCGGG	alt_5061_RC	11	6	7	10	4	1	2	5	7	6
GCGACCATTTCAACAC	alt_5061_RC	68	65	89	72	64	76	47	75	69	83
GAACTGGAACAAATGT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TAAAGTGGACAAGACT	alt_5061_RC	42	30	60	59	49	50	29	50	43	40
TAGTTTATGATTCTTC	alt_5061_RC	93	68	76	86	59	69	58	90	71	69
TTTCCTGATCCAACTC	alt_5061_RC	33	23	38	43	31	28	38	24	33	30
TACAGCTTCTAATGCC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
AGTTTCGGCATTCGGG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CTTATGCGGGCTTGGC	alt_5061_RC	73	77	89	104	58	75	69	73	68	65
ACAACCCCGCGTGCCA	alt_5061_RC	14	23	20	17	34	13	39	9	23	13
TAAGGGTACCTATTTC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TGGGCTACTAGCGTGC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CTACTGTATCGGAAAG	alt_5061_RC	13	9	12	15	17	14	16	11	17	12
TATTTTTGTGACCTCG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CTTTGTCCATCGATCA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TTACCTCAATCCGACG	alt_5061_RC	71	60	66	68	70	63	66	69	76	56
GAGACTGATGACATCT	alt_5061_RC	18	23	21	29	17	14	17	15	9	20
GACAACGGAGTCCTTT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
AGCGACCTTTGAGTAC	alt_5061_RC	18	21	30	17	9	13	13	15	21	11
AGCTGCTGTCGGGTAC	alt_5061_RC	14	21	20	14	23	15	23	17	36	16
CGTATAGCGAATTGTT	alt_5061_RC	43	28	50	52	44	38	31	42	62	44
ATCTGCCTACTCTTGC	alt_5061_RC	39	72	45	53	53	37	61	38	51	30
GTAATGGCATGTCTAG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GGTGAAGTCTCGGTCT	alt_5061_RC	35	24	28	21	16	22	27	20	24	16
TGTTAAAGGTAGCCTG	alt_5061_RC	53	28	41	36	29	47	49	31	32	52
TCATTCATCGACGGGG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CTTATCCTCTCGTGGA	alt_5061_RC	83	68	74	80	79	61	54	64	50	57
ACGGTTACTTTAGATA	alt_5061_RC	79	61	109	76	60	69	66	75	78	67
CATCTGGGCCCTCAAC	alt_5061_RC	40	40	47	37	45	43	37	40	34	34
ACACTTTGGTGATTAA	alt_5061_RC	66	70	71	62	71	64	73	50	68	61
TTTTGGCGACAAACTA	alt_5061_RC	63	64	91	83	62	71	54	43	65	55
GAAGCTGTGCATCTAA	alt_5061_RC	31	21	25	28	32	33	28	33	25	12
GATACGTGTCTGCTTA	alt_5061_RC	6	8	9	9	10	9	7	20	8	3
CCGGCAAGAAGGGGAC	alt_5061_RC	126	124	193	146	117	144	123	137	108	129
GCACCAGGAATGCCAT	alt_5061_RC	30	26	28	31	28	15	33	22	31	26
TTCCAGCTAGGGTTTT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CGGGTTGAGCTTAATT	alt_5061_RC	168	132	219	176	208	173	158	170	178	153
TGGCCCGTTTTGTCGG	alt_5061_RC	21	13	36	17	23	23	22	15	19	14
TCACTCGCTGTCATAG	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
GCGTACGGGTTAGTTG	alt_5061_RC	28	28	23	27	29	24	20	20	20	29
CACGATAACTATATTC	alt_5061_RC	65	52	92	70	70	69	70	60	54	56
TCAGTACCGGGATATT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TGGTATACAAACCCTA	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CAGCTTTCTGTGTCAT	alt_5061_RC	127	132	157	147	117	127	160	158	131	101
GTATGGGCTTAGTTTC	alt_5061_RC	59	38	86	67	54	66	44	59	56	66
GAACTTTGTGTGTCTC	alt_5061_RC	46	20	51	32	25	32	28	31	46	26
AGTGCAATGTGTGTGC	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CGGCTTGGCACCTGAT	alt_5061_RC	15	17	26	25	15	29	24	22	10	19
TGAGAGTTGTGATTCT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
CGCTTGTTCTGGACTT	alt_5061_RC	0	0	0	0	0	0	0	0	0	0
TTTCTTATATAGTCAG	alt_5061_RC	119	106	140	121	126	95	104	96	113	111
CATGTTCCTCTCTGAC	ref_4649_fdr	372	230	448	376	284	310	291	355	262	319
ACGGGGCACATATGGT	alt_4649_fdr	72	44	91	73	46	64	41	64	53	61
CCTGTGTATAAGATGC	alt_4649_fdr	24	11	24	21	12	24	11	24	14	22
GAGCTGATGCCATTGC	alt_4649_fdr	131	80	196	145	89	157	98	131	82	136
CGAATATAGTTGAGTT	alt_4649_fdr	69	42	89	77	37	65	63	80	57	69
CATTTGTTATTTTTAC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGGTTACCTTGTT	alt_4649_fdr	18	8	16	16	8	24	11	15	18	24
CGTAGCCGAAAGGGCT	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GGTACCCTAACCTTGC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GACACACTTAAACACC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
CCCCATTGATACTGCC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
AGGATAAAAGGGCGCG	alt_4649_fdr	66	41	85	66	38	68	40	63	26	65
TCATTCCGACATCTGC	alt_4649_fdr	22	41	16	17	50	16	47	20	38	20
GGTTGTATCCTCCTAG	alt_4649_fdr	161	97	187	178	102	146	108	174	135	140
CGCGGAAGCCAGGATC	alt_4649_fdr	62	23	67	50	26	60	30	46	32	28
GTCTGCCTATGACATC	alt_4649_fdr	7	6	11	6	3	3	6	4	4	9
ATACTTTCGGGGTGTT	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTGGGGCCTGATT	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCTAGTGGCAGTT	alt_4649_fdr	26	22	35	27	21	25	14	27	18	13
ATCCAAGACGTCTTCC	alt_4649_fdr	59	25	73	68	25	52	33	35	37	44
GAGTGGATGTACTATG	ref_4649_fdr	22	15	33	35	22	24	15	21	12	17
TTTATATTTTTTATGG	alt_4649_fdr	174	102	218	200	92	168	88	150	96	160
CCGAGTAATTTCTTCG	alt_4649_fdr	19	32	17	13	35	8	34	7	42	18
TCTTCCTGTTCTTGAT	alt_4649_fdr	216	90	235	246	115	188	117	182	83	186
ACGAATCCTCACGCTC	alt_4649_fdr	85	35	85	87	44	76	53	82	47	73
AAATCAGAGGCCGTAT	alt_4649_fdr	103	52	149	94	62	73	60	86	62	75
GTATATGCACTTAGTA	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
ATCATGGAGTTTTGTT	alt_4649_fdr	46	22	41	34	26	36	26	48	17	35
GCAGCGGACGACCGAG	alt_4649_fdr	77	43	92	89	54	82	62	75	39	67
CCTGCCTCGTTACGGC	alt_4649_fdr	8	21	15	7	32	5	31	9	39	9
GTTTTTCATTGGTGTG	alt_4649_fdr	54	29	57	37	39	51	29	44	34	40
AGGTCTAGACTAATAC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GCCATGCCCCCGCTAT	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTATGCTCTAACCGCC	alt_4649_fdr	160	70	152	104	77	112	77	104	83	116
CTTCCTTGAACATCAG	alt_4649_fdr	12	6	17	6	3	6	0	5	7	7
ATTTCATGTGACTAGG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGGTAGTCTAGCT	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGGACGGCTTAAA	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTAGTCCATTGAA	alt_4649_fdr	144	75	126	105	114	125	88	111	72	107
ACGGCCACCGCCCCGC	alt_4649_fdr	4	2	3	5	8	2	3	1	2	1
CTTTGGGTACAGCAGT	alt_4649_fdr	99	68	109	115	67	108	61	96	71	95
TGTGTTCAGCTCTCTT	alt_4649_fdr	17	9	31	23	15	21	11	27	10	18
CCCGCGTGTGTTTATC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TCTAGTGGAACCGCAT	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTCGATACCTTGACTT	alt_4649_fdr	25	14	31	17	19	20	22	20	22	18
CTACGTGATCGATTTA	alt_4649_fdr	34	19	36	28	33	27	28	24	22	29
GCCATGCCCACGCTAT	alt_4649_fdr	37	20	54	59	35	43	37	67	38	52
CACAAGGGCCGGTTTG	alt_4649_fdr	26	16	31	35	14	24	19	29	21	24
GGTCGAGCCACATATT	alt_4649_fdr	9	7	6	8	5	6	7	5	7	6
AGTTTCTTTAGTGAGT	alt_4649_fdr	27	26	33	25	14	27	24	20	21	22
GCTATGTTGCTAGCCC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TATCTGATGGATTTCG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCCCGCGCCTGG	alt_4649_fdr	25	9	15	19	6	23	6	23	12	21
AGTCCGGAGGTGTTCA	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
ACCATGGGTTCTGCTC	alt_4649_fdr	60	52	71	77	64	57	35	62	42	49
CGCGACTTGACACAGA	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTCCCAGTCCTTG	alt_4649_fdr	107	68	142	126	86	104	78	125	64	122
TAAAGGCTGGCTGTCA	alt_4649_fdr	0	2	8	4	0	7	2	4	5	2
GGGTTGCTGAGTATTG	ref_4649_fdr	366	218	413	357	185	320	196	307	208	309
CAGGAACTCGCGTCTG	alt_4649_fdr	253	176	309	242	153	251	158	212	195	219
CTTTGATATCAAAGGC	alt_4649_fdr	235	161	298	265	146	245	166	261	168	181
GGATCCCTTTTAGGTT	alt_4649_fdr	461	288	536	458	265	426	317	456	322	403
GTAAGATGTTATATGT	alt_4649_fdr	69	61	100	84	59	87	64	87	74	64
CCTTTGTAATTAATGT	alt_4649_fdr	0	1	0	0	0	0	0	0	0	0
TACATTTCGTACTGCC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TGTACTCAAGGGGACG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCACTCCGTAACG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
ATACAAACCTGGTCTT	alt_4649_fdr	32	47	35	32	56	40	49	40	47	27
CTTTTTCGGCGCTTTT	alt_4649_fdr	347	212	461	369	238	323	255	376	246	367
GCATCGAAACTAATGA	ref_4649_fdr	153	64	147	162	77	136	69	142	100	130
TTCAAACGTGTTTGTC	alt_4649_fdr	46	29	34	33	17	40	18	35	23	44
CATTCATCCAGCTAGG	alt_4649_fdr	67	37	46	65	25	47	29	54	40	62
AGCTGGACAACGGAGC	alt_4649_fdr	68	77	113	90	61	61	82	68	72	84
TAATGCCAGCGCTGAT	alt_4649_fdr	18	10	28	24	28	15	14	18	13	21
TTGCTTCGCTCTAGCT	alt_4649_fdr	41	25	60	47	30	60	20	47	35	40
CGGCTATTGCATTTTT	alt_4649_fdr	22	13	36	21	19	31	15	25	26	30
ACCCTCGGAACTGCTT	alt_4649_fdr	64	41	84	72	35	65	47	47	47	66
CTGTGTGGGGAGTCTC	alt_4649_fdr	15	11	23	32	12	11	15	22	14	15
TCCATACGTCACAGGG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTTGACGAGTTCTTGG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCCTTTAGCAAT	alt_4649_fdr	23	9	45	29	21	37	15	31	10	24
CAGATGCTAATAAGGC	alt_4649_fdr	78	43	111	91	36	68	42	59	45	71
CAGCCGTGAATGTGGA	ref_4649_fdr	225	174	263	202	202	214	175	190	181	184
CGAGTGGAATCTGCAT	alt_4649_fdr	36	11	33	34	23	37	22	45	28	51
TCGCGAACTATCAATG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCCCGAGTATACA	alt_4649_fdr	57	51	80	54	43	69	35	62	49	58
ACGCATATTTAGCTAT	alt_4649_fdr	79	43	94	68	36	66	51	66	44	51
CAGCTAGAGAGTGTCC	alt_4649_fdr	11	10	16	17	4	11	3	10	5	12
ATGCTTTCTGAGGTTA	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTCAGTCCTTTCT	alt_4649_fdr	54	25	62	39	33	40	25	44	25	28
CACCCCTAGAATTCAT	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TATTGTCGCTGGCTTG	alt_4649_fdr	235	110	244	255	112	208	148	211	143	185
GTGCATGGGGGGGCAA	alt_4649_fdr	2	0	2	3	0	0	0	2	0	1
TCAATCACCTTACGGT	alt_4649_fdr	41	39	46	40	31	28	30	24	34	31
GTTAGCCCGGATGAAT	alt_4649_fdr	75	40	99	71	39	58	32	71	38	66
ATCCGGGTCACTGGCT	alt_4649_fdr	26	20	29	27	24	10	17	11	19	25
AGTTCTTTCATCTGAC	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCCCTGGAGTGGG	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGAAAGTGCTTCA	alt_4649_fdr	0	0	0	0	0	0	0	0	0	0
TATAGGGCAGCATGAT	alt_5683_new	14	11	17	14	6	12	4	7	9	16
GTGCACGTCCCCCTCA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
AATGTAATATTTTAAC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TCCTTGATACAAGAGT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GGTCTAGTTTCCCATT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TTGGAAGATTTCATTA	alt_5683_new	24	8	17	20	13	23	29	22	16	13
ATTGGAGTGCTCCTGC	alt_5683_new	8	3	27	13	7	10	10	15	18	9
ACCTGTTGGCGTGATG	alt_5683_new	74	49	79	45	58	51	46	66	65	46
TGGTTGCCCTGGCTGT	alt_5683_new	5	3	5	5	1	7	3	2	2	4
CAGGCATCGTGGGTAC	alt_5683_new	130	69	163	114	85	113	96	116	96	128
CGTGACCTTCCGTGGC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GAGATTACTCCATTAA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GGTACATACTGGTTTC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GTAGATATTCGCCCCA	alt_5683_new	76	36	106	87	44	53	56	79	59	78
TATCTATGGCTAACTT	alt_5683_new	19	13	22	18	11	9	7	9	19	12
GTCGAAAAATCTTCGT	alt_5683_new	37	13	41	22	27	33	14	32	19	27
CCTTCCTTCGGAACTG	alt_5683_new	14	12	17	12	12	17	17	9	20	17
CACCCTTGGTCCTCCC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TGATGGAAAACTGGTT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GATCATTACGTCACTA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TCCTCACCTTCCGCTC	alt_5683_new	33	23	50	40	22	39	35	39	30	38
TCAAATCGCTTCAACA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TATGCTTGACATCTTA	alt_5683_new	37	24	42	35	28	42	26	33	35	44
TCTTCTCATCGTGCTT	alt_5683_new	29	22	43	28	14	25	15	18	16	25
ACGTTACCGCGTTAGT	alt_5683_new	175	116	233	157	108	135	137	159	146	150
TAAAGGGGATCCGAAG	alt_5683_new	1	0	2	1	0	1	3	2	0	2
GGTTCAGAGTGTTTAC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TTCGGGCTAAAGGCCG	alt_5683_new	41	16	22	15	14	18	12	18	15	23
CAGCGCTCCTGATTAA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
AGTGCAGTACTCCGGC	alt_5683_new	13	13	10	27	7	11	11	16	15	14
TTTCGTTCTGCTGTGT	alt_5683_new	37	29	50	40	31	52	24	45	20	30
TGCCCGCCATGTGGAC	alt_5683_new	65	28	69	75	18	61	16	52	35	60
ACGTGACTCGTGGCTG	alt_5683_new	30	15	46	41	23	28	30	26	20	32
CAATTGGTAACATAAT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CCGTCGCAGTTTTTGG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TGGGTGCGCAGGCGCG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CGCCGTCAGTAATGGA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
AGTCATTGGTGCTGCG	alt_5683_new	5	17	23	14	16	10	16	11	15	18
GCCATGGCGCTTTCTA	alt_5683_new	16	16	30	43	19	29	17	37	24	22
GATAGCTAAGATGGTA	alt_5683_new	215	96	236	224	114	228	109	220	130	182
GGGCAGGCTTTAAGTG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CGGGTAAGTTTATCAT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TGGACCTTATTAACTG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GAGAATCAGGATTAGC	alt_5683_new	209	125	266	210	133	233	137	207	141	196
TGCTAAGCTATTATAA	alt_5683_new	129	77	171	116	88	116	83	136	78	113
TTTTCTTTACTTGCCT	alt_5683_new	146	91	188	152	93	133	82	128	97	123
GCAGAGGTAATACAGG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GATGTATCTGTGGTGA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TTATTCATATCTGGCC	alt_5683_new	22	4	22	25	5	9	2	10	10	8
GATAAATGATAACTAG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GTGTCTGGTTGACTCT	alt_5683_new	20	15	14	13	9	16	11	6	20	14
CCCCTTATTGACTTGT	alt_5683_new	19	26	27	23	22	26	31	20	30	21
TGCTTTGTACGAAGCA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TTATTTGCCTCTAATG	alt_5683_new	77	54	84	77	41	74	67	56	79	53
ATACAATATTTTATAG	alt_5683_new	16	7	29	7	14	20	21	17	14	21
TGACTTGTCGTTCATT	alt_5683_new	45	13	49	37	24	34	21	36	30	25
TAAGGTGATCCTTTCT	alt_5683_new	20	16	34	16	21	24	16	19	13	16
AGTCAGGCCTCCCCTA	alt_5683_new	6	10	12	12	15	11	12	14	11	8
CCATTGGTAGTTTGAA	alt_5683_new	61	52	80	71	52	62	45	47	64	59
ATAGGGCTAGTCTTTG	alt_5683_new	28	17	28	30	16	19	23	22	18	26
ATCTCTCGACTATCGC	alt_5683_new	75	36	68	54	33	60	43	68	43	58
TCTTTCCCCTGTCGTG	alt_5683_new	5	14	28	17	32	16	40	18	32	19
GCGTAGCGTACTTTAG	alt_5683_new	98	69	121	84	60	93	59	80	49	76
TGCCAAGTTTTGTAGA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GAATTATCTCATCACA	alt_5683_new	88	56	70	96	53	67	27	101	60	112
GACTGTCGGTACGCTT	alt_5683_new	94	51	108	93	55	83	53	71	44	66
TTACTGGCTTCGTCAT	alt_5683_new	67	29	58	74	32	67	51	69	47	63
TCATGTGTTGTCTCTA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GCGCCTGTAATCTGTT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GGCTATTCAAACTGGG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CCCGCCGTATGTCCCT	alt_5683_new	32	95	78	50	82	29	92	47	90	33
GATTACGCATTGAAAC	alt_5683_new	12	7	13	17	8	17	8	10	6	8
CTATGGCCAGTTTCAG	alt_5683_new	5	1	6	3	1	5	2	4	3	5
CTTATTAGACAGTCAC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CCAGTTGTAAGACCAA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TATGGAGGGATGCGCC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TCCTGGGTCTAGAACA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
AGTATTCGTTGATACC	alt_5683_new	14	7	21	10	6	7	15	11	9	14
TGGGCGTCCTAGCGGT	alt_5683_new	82	48	100	55	30	64	40	66	46	61
CTTCTTGTGTAATCCC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TTCTATTAAGCGGTCG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
ATCGGTCGGTGTGCAC	alt_5683_new	9	49	12	11	32	11	30	8	40	9
AACGTGACAGGCTATC	alt_5683_new	106	75	112	96	74	111	71	86	49	84
CTACAGGAAGCTGTTA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GCGGCACGGATTTATG	alt_5683_new	118	55	143	96	43	91	62	96	74	77
TCGTCGCGCCCATTAG	alt_5683_new	44	22	29	34	32	28	25	34	28	37
GGTTTTGTTACAGGGC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TCTCCGGCACAAGGCA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TCATGTAGGTATCCGC	alt_5683_new	0	0	0	0	0	0	0	0	0	0
GTTTGCCATGATAATT	alt_5683_new	54	21	41	49	26	41	38	27	28	47
AAGCAACTTAGTATAG	alt_5683_new	79	50	99	89	64	90	72	84	58	53
ACTGAGCCGAGTAGGT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
ATCACGTTATATGGCG	alt_5683_new	43	21	50	36	31	42	35	33	24	34
TTTTTTGTATCGCAGT	alt_5683_new	112	75	121	101	57	88	83	81	58	101
GCGAGGGTGATATTCT	alt_5683_new	35	33	35	37	23	45	16	37	23	52
TGTGTCACAAAATTGG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TCATCCATTTGCATGC	alt_5683_new	10	4	15	10	2	5	5	6	4	5
AGTGTGAATTGGTTCA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TATTCGACCTGGTGTA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
AGGTTGCGTCATTGCG	alt_5683_new	18	8	16	11	9	15	14	14	11	14
TCCAACTTCGAGGGGG	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CCTAGGTGGTCCTAAT	alt_5683_new	1	2	6	1	0	1	3	6	6	4
TAGGCTTCCCGCCGTT	alt_5683_new	13	11	17	12	14	10	14	16	11	12
TTCTGTCCATTCAATT	alt_5683_new	26	20	43	26	9	26	19	32	24	27
ATGCTACTTTCCACGC	alt_5683_new	29	19	35	22	16	23	17	27	31	23
TGTGGTCAGTTTTCGT	alt_5683_new	42	14	50	37	17	45	30	38	30	26
GGGAGATCCTCCTCAC	alt_5683_new	55	27	48	39	16	47	28	45	22	38
ACGCATTTCTTCCGGT	alt_5683_new	13	8	22	17	11	15	10	21	6	13
GTTAATGCCGATCTTA	alt_5683_new	62	34	104	81	51	57	57	61	45	63
TATTCGACCTGTCGTG	ref_5817_new	82	57	110	77	60	68	68	97	78	53
GCCGCCTCTCCGATAG	alt_5683_new	6	12	14	9	17	12	16	14	17	6
CGCGTTGCTGGTATGC	alt_5683_new	110	76	119	115	96	89	71	97	74	100
AATATGACTGGGCCTG	alt_5683_new	129	73	213	132	81	150	92	135	47	134
TCGCTCCTAACTTCAA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CAGGATAGCCTACCCA	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TACACCGGTTTAGATT	alt_5683_new	54	35	68	59	66	53	45	42	57	38
CATCATATAGTCACCT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
TGTCCGACATTTGCTG	alt_5683_new	35	16	34	31	18	24	16	40	13	18
GATTGCATGGTCTGAG	alt_5683_new	49	34	51	37	37	36	23	45	20	41
ATTACTATTTTCGAAA	alt_5683_new	3	5	5	4	2	6	4	1	2	4
GGACAGTTACACCTTT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CTTTCGATCCTAAATC	alt_5683_new	44	30	45	51	35	43	34	36	35	31
CTCTCCAAGTGTCTCA	alt_5683_new	19	12	25	12	12	17	11	18	15	16
GTCATTAATGTTACTT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CTAACGTGCCTTTGGT	alt_5683_new	9	14	13	13	4	9	5	14	4	13
GTACTGTTTAGACCTC	alt_5683_new	26	24	32	28	24	25	31	31	17	19
TGGGTTGACTTTCTAT	alt_5683_new	0	0	0	0	0	0	0	0	0	0
CAAGAAATATTGCATG	alt_5683_new	12	5	15	22	3	13	11	18	16	15
CTTCACGTCAGAAGTA	alt_5683_new	63	31	96	68	54	64	48	54	54	66
ACTATCTTCATGTATT	alt_5019_fdr	13	22	21	23	10	14	7	16	8	16
CAACTGGTTGCTACTT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCGTCTGATGTC	alt_5019_fdr	31	20	32	40	16	38	20	27	10	23
GCCTTGGCTGAGTGCG	alt_5019_fdr	19	5	17	21	11	12	11	10	11	11
TCCGGCTGTCAATTCA	alt_5019_fdr	52	69	67	67	51	49	72	54	58	56
ATTTCTCTCCATGTTT	alt_5019_fdr	145	74	156	140	89	128	62	144	69	114
TGTCGCATTCGATAGG	alt_5019_fdr	59	22	68	48	35	51	33	47	34	37
TCGGAATGCTTATGAT	alt_5019_fdr	48	21	63	55	23	42	34	50	31	33
CAGGTGGTGACGGGAT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGTTCAGCTATTT	alt_5019_fdr	66	43	97	91	51	66	50	70	44	58
TGATCGTTCATTGGCT	alt_5019_fdr	7	10	13	15	14	5	21	9	5	10
CGGGTCTCTGGCATAA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AATACTTCTTTCTATG	alt_5019_fdr	69	41	84	74	53	66	40	66	53	52
CCGTCCGTTGTCTTGG	alt_5019_fdr	32	20	52	31	13	24	26	40	17	15
CGTATTCATTACTGTG	alt_5019_fdr	9	15	24	13	17	23	12	26	12	13
TTAGGGCTTATCACCC	alt_5019_fdr	67	44	75	64	45	51	48	48	39	70
CGCTGACTCTTAATGT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AAACCATTGCTCTATT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CCTTATCATTAGGGTG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTTGAAATATAC	alt_5019_fdr	32	38	60	47	25	55	43	52	33	46
GTCTACAAATCCCGTC	alt_5019_fdr	12	11	19	17	12	10	9	20	9	22
GTATATAGAACCTAGG	alt_5019_fdr	9	3	14	9	8	6	8	10	8	0
GTTTCTGTTCAATAAC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCCTGTAGGAGAA	alt_5019_fdr	26	28	56	39	23	27	25	37	31	39
CGTATAATGTCCCCTT	ref_5019_fdr	47	42	95	74	48	56	53	70	48	55
TGCTCCTGTCCATTTA	alt_5019_fdr	31	12	43	30	19	30	18	28	15	17
ATAGCGTTCGCCCCGC	alt_5019_fdr	9	6	20	9	11	11	7	13	10	14
TGCGCCCTTCGAGGTA	alt_5019_fdr	23	12	25	18	10	13	12	22	19	16
TATTCTTCATGATAGG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
ACGAGGCTGTCAGCTA	alt_5019_fdr	154	102	203	190	123	158	118	173	112	135
CATAATTCCTCCGGTG	alt_5019_fdr	48	32	51	51	46	55	34	41	37	57
ATCAATATTATTTTGC	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CGGGAAGGCTCCGCTC	alt_5019_fdr	77	37	91	92	66	79	57	79	63	73
TCGTTCTCAGTTGAGC	alt_5019_fdr	0	0	0	1	0	1	1	0	0	1
TCGGAACTTCACCCGT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TGTTACTTCCTTTTAT	alt_5019_fdr	9	11	14	17	12	17	13	15	10	16
GCTGACCTCTTAGTTT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TATGCCTCATCCGGAA	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAACTCTAACATT	alt_5019_fdr	30	11	27	26	15	31	25	23	13	16
GTACTGAGGCTTTCCC	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTAATGTGTTTAG	alt_5019_fdr	204	123	228	183	101	181	143	171	117	151
AACTTCAACCTTTTTG	alt_5019_fdr	0	0	2	0	0	3	3	3	3	1
GTTATTCGAAATTTGC	alt_5019_fdr	11	15	18	10	8	13	6	13	8	11
GCGGCGGGCTGCCTAC	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GGCATAAAATATGCTC	alt_5019_fdr	26	24	35	20	19	21	18	16	18	19
GCCATTGCAAGTTTTC	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GCCATATGAGACTTAT	alt_5019_fdr	12	10	11	18	8	7	6	5	11	9
CTTTCACTCGAAGTAC	alt_5019_fdr	18	17	46	34	19	34	22	39	33	37
AAATTTAGAACGGTAT	alt_5019_fdr	24	16	25	32	20	20	19	30	16	22
AGCAGTTGCAAGTCCG	alt_5019_fdr	48	46	91	75	39	64	51	47	57	60
CCGCGCGGATCAGTTG	alt_5019_fdr	20	12	17	17	18	16	18	22	16	23
TTCGGTCCGAGATTCA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CGCAAATGACCTATCC	alt_5019_fdr	47	47	68	54	56	61	43	48	64	51
AGTTTTCAACGCGGGG	alt_5019_fdr	14	6	6	13	10	6	13	17	10	8
CGTACGCAGCCCACAC	alt_5019_fdr	68	49	82	88	59	65	66	72	57	50
GTACACCAAGCCGGTA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTGCTACAATCC	alt_5019_fdr	43	44	66	54	41	61	45	60	33	25
GGTAAACAAAGCCCAG	alt_5019_fdr	166	99	195	156	98	152	89	186	117	167
GAGAACGCAGACCCAT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTCTACCTCGTTA	alt_5019_fdr	33	40	38	42	39	28	44	30	38	31
TCCTGGGCGTAGCGTT	alt_5019_fdr	31	10	30	18	15	23	13	22	15	24
TTCTCCCCTTGAAGCT	alt_5019_fdr	22	37	42	40	36	38	44	29	48	26
CTCTTGTGGACCGCAT	alt_5019_fdr	73	33	106	73	56	79	58	58	57	79
TCTTAAATTCTTTACT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTAAGAGTTAATT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTAATGTGTTTAG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GCAATCGGGAATATTA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGGCTCACATAAG	alt_5019_fdr	13	5	19	10	8	11	12	15	7	11
CAGATATCTATACGAC	alt_5019_fdr	6	9	14	20	6	18	12	10	9	5
TTGACTTTAGTTCGGC	alt_5019_fdr	54	37	66	56	46	47	40	52	42	65
TCTTATAACAAAAGGA	alt_5019_fdr	36	32	49	41	31	46	23	33	32	37
TGTGGCTTTGGTGCCC	alt_5019_fdr	28	11	19	19	7	14	10	9	11	13
TTCATTTGCTTCCACA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CGAGAGACCAAGACGG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AATCTGGATATCGCCA	ref_5019_fdr	58	62	105	87	52	73	49	76	52	85
CTGAAAGCATTGCTGC	alt_5019_fdr	16	20	26	15	17	16	20	13	15	27
TTTCTCACCTTTAAAG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCCCTAGACTTTG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
ACAAGTCCCACTCCAG	alt_5019_fdr	7	11	4	16	12	9	4	5	15	10
TTACATCTATCCTACC	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AGTAAACGTTTCCATA	alt_5019_fdr	31	23	42	31	21	28	19	36	22	26
GCAGCTGGATATTATC	alt_5019_fdr	23	26	48	43	21	38	37	33	25	26
TCCCGATGTATGTCGA	alt_5019_fdr	11	3	18	15	4	13	5	8	10	13
TAATTTCGCTGTAGGC	alt_5019_fdr	57	23	57	41	25	45	25	43	40	44
GCGTTTCACTGTTTGG	alt_5019_fdr	6	5	11	2	4	5	7	3	2	6
GTCAAGAATACGAATG	alt_5019_fdr	15	12	8	23	9	12	13	20	7	23
TATGCGGGATGCCTTA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AAGCAAGCGGGCTCAT	alt_5019_fdr	34	45	40	50	42	51	38	48	38	41
TTTATTTTTGTGCGAA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TACGATCTGCCATAAT	alt_5019_fdr	110	75	142	123	52	128	73	134	76	118
GACTAATCGGTGGCGA	alt_5019_fdr	65	36	52	62	39	57	41	45	40	57
CTTGCCCGAAGACGCT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TTATTGTACGAGCCTG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AGAACCAATACAGGCT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GCTATCTATTGGCGTT	alt_5019_fdr	15	10	13	6	8	15	5	5	11	7
ATCCAGGAACTTGTCA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CGAACGCGAATCGATG	alt_5019_fdr	14	8	17	18	8	19	13	14	10	18
TTTATGAAATTTCCCA	alt_5019_fdr	13	10	8	11	11	5	5	6	4	5
TAGTCGAGTATTATGG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CAGCAATCTGCATTTC	alt_5019_fdr	10	5	3	7	3	5	3	4	5	6
CCTAAAACTTTTCACT	alt_5019_fdr	42	20	40	48	22	38	23	41	29	42
GAATTTTGGCACCGTG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CAAACGAAATTTGGTC	ref_5019_fdr	47	33	37	50	28	36	23	29	28	34
GTTCGAGGCATAGTTG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GGAAAATTGTACGATG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTCAATATGCACG	alt_5019_fdr	73	46	68	62	46	58	48	58	58	55
GTGGTCCCCCTTGTTA	alt_5019_fdr	1	1	0	1	0	0	1	3	0	2
CAAGTTGGGTAACATG	alt_5019_fdr	22	10	16	30	14	19	13	18	16	15
GTGATTGTTAGCTCTG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GCACGATTTGGGTTTA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGAGTTGCCCCGC	alt_5019_fdr	100	61	91	92	62	89	59	72	44	86
TCAAAGGTTGTTGTTG	alt_5019_fdr	96	60	150	124	79	106	77	83	102	90
AATCACTCTAGAACAG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCCCTCCGAGTAT	ref_5019_fdr	377	250	457	384	240	374	214	409	238	329
CTAGGTTTCTGTAGTG	alt_5019_fdr	13	9	17	13	6	14	10	9	18	10
GACGGGTGCCGCCCGG	alt_5019_fdr	65	53	88	72	52	58	48	67	35	73
TGCGTGACAATCCTCG	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TGAATTTTGATGTGGA	alt_5019_fdr	63	44	83	80	44	80	40	62	52	69
ACGGAACTTCACCCGT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
AGTATCGGGTCGTGTT	alt_5019_fdr	82	26	74	71	42	67	39	59	33	59
GCATATTCGATCTACC	alt_5019_fdr	8	15	15	22	16	16	6	11	27	16
TGGCACCCAAACAGCG	alt_5019_fdr	29	16	26	20	20	20	15	21	15	23
CGGCACGTGGCCGTTC	alt_5019_fdr	13	4	14	9	3	17	10	9	11	7
GCTCCTTTGCGGTGGT	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTACTATTTGTGG	alt_5019_fdr	46	21	54	46	18	42	48	40	33	45
CGCACCCAGATGATCA	alt_5019_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTCCTCCTGCTTG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGAGTACCGGCTG	alt_2853_upstream	97	48	79	77	58	61	52	71	52	72
TCAGCTGAATGGGTAT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
CACAGATTAAGCCTCG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
AGATCGTAACTACTCC	alt_2853_upstream	21	53	24	31	40	29	47	34	43	14
ACCGAGCGCTCGGAAG	alt_2853_upstream	12	13	13	22	6	20	8	11	12	9
CCATTACGTCTTATCA	alt_2853_upstream	29	22	38	35	26	21	21	36	19	18
TTTGAATTGGCACACG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCTTATTATTTG	alt_2853_upstream	129	58	140	110	67	96	75	102	59	118
GGTTCGAGTGGTAGAA	alt_2853_upstream	3	4	9	2	5	7	4	4	3	5
GGAAATAAAACCGCTA	alt_2853_upstream	25	14	35	40	29	38	26	30	22	35
TACAGGTGTCTCTGGC	alt_2853_upstream	21	24	35	29	18	26	17	18	16	25
GAGCGGTTCAAAATGT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTTTGTGCGTGCG	alt_2853_upstream	10	11	16	20	15	12	22	20	10	23
TCTTTAAGTCTTCACG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCTCTTGGGTATA	alt_2853_upstream	69	41	113	83	55	72	60	92	62	88
TCATTAAGCAGTGGTC	alt_2853_upstream	125	93	170	144	91	114	92	140	90	142
CGGTAGCTGCCTTTCT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTGTGGCTCTGTT	alt_2853_upstream	15	13	17	21	10	17	10	21	15	26
CAATCCCTTGCGCTTT	alt_2853_upstream	343	197	390	344	209	357	226	303	258	308
GGATGGGCTTACAATA	alt_2853_upstream	26	27	33	49	33	34	16	35	23	33
TCGGTGTCCCTCTTTT	alt_2853_upstream	105	56	130	106	73	87	61	109	67	95
TTTTTATTTGAAACAA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGTTATTGTCGATATG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTGAACGACCATC	alt_2853_upstream	83	62	105	102	67	102	60	68	70	78
TATGGCGCGACTATTC	alt_2853_upstream	369	202	432	381	209	337	207	312	209	345
ACCTTCTCCGGGTACA	alt_2853_upstream	19	17	21	19	20	9	13	18	15	19
GTAGATTTCCCCCTAT	alt_2853_upstream	38	15	36	24	9	25	16	24	37	33
GCGTTAGGGCGGAAAT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGATTACGCAGGTTTT	alt_2853_upstream	235	140	243	215	127	192	118	178	143	185
GTCGCGTATGAATGCA	alt_2853_upstream	18	16	15	24	16	13	15	13	12	21
TCTCACCTGAGGAATA	alt_2853_upstream	168	173	213	208	167	157	169	194	168	160
TTGAGATTAGTGTTCT	alt_2853_upstream	38	25	51	52	33	44	30	48	41	36
TGTCACTTCCGACTAT	alt_2853_upstream	381	250	429	390	283	361	267	356	279	355
CGGTAGCTAAGGATGG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGCAAAACCCACA	alt_2853_upstream	36	25	55	28	19	33	24	39	16	43
AACGGTAACCATACCG	alt_2853_upstream	34	16	46	33	28	33	23	41	31	28
TCAATTCCTTATACCG	alt_2853_upstream	160	111	203	182	105	169	120	161	113	165
TTTGGTCGGCGCCGTC	alt_2853_upstream	33	28	68	42	26	45	31	52	20	36
CGAGTACCTATGGAGA	alt_2853_upstream	3	3	7	0	2	2	9	2	3	4
GGACAGGTGTCCCTGT	alt_2853_upstream	82	62	122	110	62	96	69	101	83	72
GTCTTGCTTACAACGT	alt_2853_upstream	37	27	61	51	33	64	31	58	30	34
GTGTGGGTCTGCCCGC	alt_2853_upstream	75	42	91	69	34	82	41	99	30	68
CCAGCACGCGCCATAA	alt_2853_upstream	33	48	58	43	30	46	41	51	46	49
TTATGCCCCACTATCT	alt_2853_upstream	26	19	41	36	14	28	23	31	23	26
CACCTCTCGTCTTTAC	alt_2853_upstream	13	17	11	15	17	10	9	17	13	10
CCACTTGCTTTAGAGT	alt_2853_upstream	101	72	136	100	79	103	69	106	89	99
TAAGGTTCTACTAACC	alt_2853_upstream	24	15	35	24	13	26	15	32	13	24
ATTAAGCAAAAAATGC	alt_2853_upstream	17	16	34	16	9	25	11	14	6	26
AAAGCTCTGTAAATTG	alt_2853_upstream	28	31	50	48	28	31	28	41	22	37
CTTTTTGGTACGGGCT	alt_2853_upstream	19	10	23	16	16	31	13	26	6	26
ACGCGGTTTGGGGCGT	alt_2853_upstream	43	27	61	45	15	43	19	38	23	48
AAACTCTAGATTTCCT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ACTATGTATCGCCTTG	alt_2853_upstream	43	13	40	48	20	26	28	37	30	37
GATAGGTTGAAACTGA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGGACTTGCCTAGCGC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGTGCGATAAGAC	alt_2853_upstream	295	174	348	306	173	303	219	300	194	260
CCCTCTTCGAGTAACC	alt_2853_upstream	50	26	86	43	30	65	30	54	34	35
GGTGTCGCAGACATCT	alt_2853_upstream	52	20	71	44	19	49	22	52	26	40
CCTCCTACGACGATTC	alt_2853_upstream	32	30	40	33	19	30	38	26	23	22
GTCGCATAATAGTGGC	alt_2853_upstream	145	66	188	158	80	154	66	154	71	130
CACGATGAACCGCTAA	alt_2853_upstream	77	38	81	67	40	69	41	63	36	64
GTCAAAGATAGAGGAA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCCAAACCCTGAA	alt_2853_upstream	4	34	6	10	22	4	39	4	44	7
GCTACCTGTGAACCTG	alt_2853_upstream	18	5	18	16	4	16	10	16	13	7
ATACTGAGCGTTGAGT	alt_2853_upstream	2	0	1	0	2	0	0	2	3	0
TTCCCGATAAAAGAAG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTGCATGGCGTACTTG	alt_2853_upstream	7	2	9	7	8	9	2	4	0	5
GATTAAACACGTCCCC	alt_2853_upstream	7	8	16	17	8	6	14	5	13	13
TTATGTACTGTGCATG	alt_2853_upstream	142	99	160	152	90	112	93	113	77	124
GCTTACCTCAGTATCC	alt_2853_upstream	22	31	14	18	37	25	48	20	47	10
GGAATTGAGATTTGGA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTCTCGCACACGT	alt_2853_upstream	116	68	143	108	70	117	65	110	65	99
GAACTCAGGGGTGGAC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCTCCAAGTTGTA	alt_2853_upstream	92	58	132	101	43	82	66	92	69	107
TCTTGAGGCTATGCAC	alt_2853_upstream	29	23	35	28	15	25	28	36	16	33
CAATGTTTCACATCGG	alt_2853_upstream	38	27	38	31	24	27	22	28	24	35
CAACCTGGTCACGTTT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCGTACGTATAACCAT	alt_2853_upstream	101	42	124	107	51	118	50	97	67	91
CTGGCCGCATTTTATC	alt_2853_upstream	5	4	8	4	2	10	14	0	2	5
TCACCCATTCATTCTC	alt_2853_upstream	79	54	95	84	53	72	51	79	50	61
TACCAACAGAATTCAG	alt_2853_upstream	17	7	20	9	4	22	14	9	10	10
TTTCGCGAATCTTTTC	alt_2853_upstream	70	49	87	97	48	85	42	72	38	64
GATCTGCTTTCGGGGT	alt_2853_upstream	235	161	291	229	147	240	154	195	156	209
TCATCACCTTAGATAC	alt_2853_upstream	90	66	98	97	74	78	66	90	77	69
CGGGTTACGCTCTTAC	alt_2853_upstream	0	0	0	1	0	0	1	0	0	0
GCACGTGAAGAGATAG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTACTATAACCGG	alt_2853_upstream	48	38	58	47	34	46	35	38	27	42
GGCCCTGAGCAAGTCC	alt_2853_upstream	10	8	12	12	3	12	11	9	2	10
GCCTTTGTCGCGGGTT	alt_2853_upstream	112	85	151	134	87	132	108	134	92	123
ATGTACAGCTTGATGG	alt_2853_upstream	32	37	30	66	24	32	35	40	37	48
CATGTGTTGATCATGC	alt_2853_upstream	24	22	16	29	8	25	17	31	9	16
TACTATGGGAGTAGTG	alt_2853_upstream	174	106	232	199	117	183	86	167	108	148
ATGAGAAGGTTGTTTA	alt_2853_upstream	27	12	42	28	13	29	22	19	17	24
GGGAGGGTCGGCCCTC	alt_2853_upstream	16	2	24	8	8	10	8	10	8	12
CTCATTAGAGCATACT	alt_2853_upstream	35	19	40	39	19	26	27	22	22	35
TCCCAGCGTTGCGCCG	alt_2853_upstream	293	178	373	331	208	279	179	262	219	237
ACTACTCGCGGGTAGT	alt_2853_upstream	17	8	8	13	8	21	10	20	7	17
CTATGGGGACCAGCCT	alt_2853_upstream	7	8	7	4	2	10	7	5	6	8
TTTGTCCCCTGGGAGA	alt_2853_upstream	22	13	30	21	18	23	11	21	7	24
CCTTTGCGTCCAGTAC	alt_2853_upstream	49	39	62	38	38	36	59	40	50	32
TTTACAGTATTCACCT	alt_2853_upstream	78	43	102	86	36	71	54	70	49	66
ATACGATCTGTGGATT	alt_2853_upstream	131	90	161	127	68	127	85	132	84	107
CATTTTGGTAATACCA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
AATCCGCTTTAACTGG	alt_2853_upstream	24	8	33	25	19	19	12	16	18	24
GCGATCGGTCGGATTT	alt_2853_upstream	49	26	51	48	34	42	22	46	30	33
TATGGGAAGCCGTTGG	alt_2853_upstream	9	6	11	19	6	8	8	12	13	6
TGCGTCTTATGCTTTA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCCTTGACCAAAA	alt_2853_upstream	35	27	46	41	19	34	16	36	23	29
TCCAACATGCGGTGTC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GATCGTCCATCTCAAG	alt_2853_upstream	169	109	200	185	124	130	120	180	123	159
CTCAACAATGCTCTCG	alt_2853_upstream	67	48	110	86	50	85	49	69	27	68
TTATTATCTCATCCTC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGCAGGGAGTCTG	alt_2853_upstream	11	4	8	10	7	9	2	6	9	12
GGTATAGAACACAATT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGGTGTGTCTAGG	alt_2853_upstream	63	50	81	77	33	62	44	56	46	46
CAGCGCACTTAAAAAC	alt_2853_upstream	7	6	8	18	17	16	7	14	10	10
GTTCTGTTAAGGCGCG	alt_2853_upstream	121	74	148	146	108	126	91	138	92	127
AACGCAAAATGGTACA	alt_2853_upstream	30	30	27	40	15	36	22	30	20	22
ATACGTACAAGGAAAT	alt_2853_upstream	114	66	136	124	70	108	106	112	73	73
TCTGTAGTATGTAGTC	alt_2853_upstream	43	19	39	38	29	39	23	31	24	33
TGCATTTGCAGTTTGT	alt_2853_upstream	10	8	22	12	6	12	10	9	7	22
CGTCCATAGGCGACCG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTACTGGTCCTTC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCCTTCAGCGCGC	alt_2853_upstream	91	53	118	85	63	88	61	88	61	71
AAGAGGATTAATACAT	alt_2853_upstream	53	20	58	46	30	51	26	50	41	37
ATGTTCACACTTTCGT	alt_2853_upstream	36	27	49	41	18	35	23	31	36	56
TTCCGGCGACGTTTTC	alt_2853_upstream	71	48	87	69	45	65	62	52	43	67
GGCACTCTCTGGTTTG	alt_2853_upstream	111	65	158	109	58	132	70	106	59	110
CCACCAAGGTCAGATG	alt_2853_upstream	23	10	36	40	24	28	21	18	47	25
AGCCTGGTTTAAAGGC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
AATGGGTTTTTTCTAA	alt_2853_upstream	89	42	90	83	56	73	57	89	47	91
TTTTGAATGGATTTTT	alt_2853_upstream	38	14	46	29	16	33	13	19	19	31
TATTTTCCTTGTTTGG	alt_2853_upstream	110	49	112	115	41	91	43	98	48	93
GCCCTCGCCGGTCTGT	alt_2853_upstream	63	46	77	66	43	53	43	74	46	63
TTCTGTCGCCATCCGG	alt_2853_upstream	55	38	84	64	45	58	43	59	44	64
GTCTGACTATAGCTTC	alt_2853_upstream	37	20	34	36	33	28	22	30	21	26
TCACCAGTAACTCGTC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
CACAGCTGAAGTGCGC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GACAGCTGCTTTTACG	alt_2853_upstream	50	22	52	39	27	46	30	26	30	40
GCCATGCGCAATACGA	alt_2853_upstream	138	107	197	183	118	167	104	143	127	160
GACTGCAATGAGACAT	alt_2853_upstream	154	73	162	123	86	145	95	132	82	115
TGTTACCCTTTACTAT	alt_2853_upstream	1	4	4	6	2	1	0	6	0	1
TTCTAGGAGTGTCTTG	alt_2853_upstream	0	0	0	0	0	1	1	0	0	0
CGGCTCGTCCTTAGTA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGGCCCAGGACTG	alt_2853_upstream	22	10	22	11	6	10	6	8	9	28
CCGAATCATAAGCCTC	alt_2853_upstream	132	71	163	135	72	132	101	113	87	111
TAAGGGGTGAAAGCGG	alt_2853_upstream	770	407	965	840	426	762	472	736	472	717
ACCCCGCGTTGCGCTT	alt_2853_upstream	16	8	21	21	8	16	19	15	7	17
ACACGAATAGCCCCTT	alt_2853_upstream	46	29	76	56	39	55	36	57	31	66
GCGAGTCTTCTACTAT	alt_2853_upstream	133	79	157	144	96	142	88	130	92	127
TTTTATTTGTTTGTTG	alt_2853_upstream	112	44	110	108	38	78	52	97	42	93
AGACTTGAGGTCCTAC	alt_2853_upstream	217	108	283	239	146	226	115	241	135	206
TATTTAGCGCTCGCAT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
CGGGATGCATCCTTCG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TCCAATTTCGCTGGAA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGTTCTTCTCAGA	alt_2853_upstream	53	26	79	57	41	70	44	41	38	59
TCGACCTACCGCGTCC	alt_2853_upstream	24	18	37	33	14	28	16	23	20	19
GTATACCTCTTTTTAG	alt_2853_upstream	157	93	204	165	119	164	89	167	107	142
AGTATAGTTCAATCAT	alt_2853_upstream	514	361	608	565	316	516	304	520	325	505
TGCGCTTTTCCGGCGT	alt_2853_upstream	61	40	77	73	30	54	37	65	38	46
ATTGGGCGTGCGTGTA	alt_2853_upstream	43	29	55	54	26	50	28	43	32	30
ACTTGTAGTCGCTTCG	alt_2853_upstream	443	293	523	473	254	443	276	441	285	362
CATATCATTTAGCTTG	alt_2853_upstream	163	111	180	165	103	131	123	152	84	157
ATTTTGTGATCTTGCG	alt_2853_upstream	13	11	14	10	5	11	12	15	9	15
CCACTGACGTGGGCCC	alt_2853_upstream	8	17	13	15	28	11	21	5	25	10
CTTTTCGTTGGGCCTC	alt_2853_upstream	137	90	193	166	92	144	95	148	102	131
TAACATACGTTTTCAG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TACGATGGTTGGCGCC	alt_2853_upstream	89	45	102	84	58	83	47	89	48	62
TGGCAGATTTTGCACT	alt_2853_upstream	37	28	56	40	18	33	31	31	25	39
TTTTACTCTTTGCACC	alt_2853_upstream	71	58	91	92	34	54	46	81	54	66
TTTATTAGGGTCACCG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAGCAAGACTTTA	alt_2853_upstream	218	133	293	220	143	254	135	215	171	178
AAAGAGTAGCGACAGA	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGTGATTCCCGAG	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
ACGGGAATCGTGCCGC	alt_2853_upstream	115	75	146	122	83	126	100	120	100	101
ATACAATCGGAGTGAA	alt_2853_upstream	76	44	85	67	57	62	50	65	65	82
CGGAACTCTATTGACA	alt_2853_upstream	12	12	26	16	8	14	5	11	11	8
TACGCATGATCTCAAC	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTCATGTCGGGT	alt_2853_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGTTATGGTATGC	alt_2853_upstream	145	113	189	175	105	181	123	144	126	136
TTCTTTTCCCACCTAC	alt_2853_upstream	94	60	98	105	64	101	61	90	51	81
TCGGGGGGATAGGAAG	alt_2853_upstream	48	31	65	68	30	59	37	56	34	61
ATGTGTGGATATTCCC	alt_2853_upstream	67	34	85	53	35	82	33	58	26	53
AGCTGGTGCCACTCAG	alt_6049_new	21	22	21	18	31	23	20	20	26	17
CGAATTATTTCACCCT	alt_6049_new	71	87	67	64	81	55	82	64	81	59
TGGCCCTGTAATGTCG	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GCTGTCAGTAATCCAT	alt_6049_new	29	41	36	42	44	35	37	31	36	23
CAAGATTTTTGTTGGA	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GAATCTGACAGTTCTT	alt_6049_new	1	4	1	1	4	0	3	0	3	3
CTCCTAGACTCTCTGG	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GATGTCATACCATTCA	alt_6049_new	24	34	45	19	62	25	44	31	49	30
TCGACCACTTGCTGGC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GATTGTATCCGTATTA	alt_6049_new	55	78	77	59	80	52	82	28	94	49
TATGCGTTATACGTAC	alt_6049_new	9	19	6	11	20	3	23	10	31	7
ACTCCACATCCGTTAA	ref_6049_new	49	318	46	52	350	32	340	51	368	36
CGAGCTAATTAGTCCA	alt_6049_new	32	48	38	25	30	25	36	30	38	25
TTAGACGGTACTTTGC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
AGTCTACGGTCCGTTT	alt_6049_new	56	79	59	65	110	42	77	36	111	46
GAGTGTGCTAACTCCC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
TGGAAATTCCAGGTTC	alt_6049_new	67	78	95	74	84	74	107	73	111	54
CCCCGCTAGTTCTCAA	alt_6049_new	9	5	6	2	3	1	5	3	10	5
GTCGTCAGGTGTTAGC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GTCTGGGTTGGGCCGT	alt_6049_new	0	0	0	0	0	0	0	0	0	0
ACTGGTCACAACTTAG	alt_6049_new	0	0	0	0	0	0	0	0	0	0
CAGATTATTCCTCGGA	alt_6049_new	0	0	0	0	0	0	0	0	0	0
ACCGATGGTGTGCTGT	alt_6049_new	30	47	36	38	34	33	48	27	34	33
TTTTAGATTAGCTTGG	alt_6049_new	42	61	53	45	58	38	68	30	64	35
ACATCCCTAGAGCCCT	alt_6049_new	43	71	50	39	70	41	67	36	71	50
TATCACTATCAATTGA	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GCTAGAAGATGCGTAT	alt_6049_new	1	2	3	2	4	3	7	3	0	5
TATTAGGTTGTCGTGA	alt_6049_new	0	0	0	0	0	0	0	0	0	0
TGGCCCTAGCTGGTTA	ref_6049_new	37	32	36	23	35	28	52	29	40	28
ATTTTAAGGAGTTATT	alt_6049_new	39	74	60	45	73	48	77	44	82	34
TTTATGGCTTCCATTT	alt_6049_new	8	17	13	15	11	15	13	12	22	13
CCCTCGTTAATCTTTG	alt_6049_new	44	54	46	39	42	31	52	32	48	37
TCCTACTTGATGACAT	alt_6049_new	22	26	30	18	41	20	36	31	49	17
GCGAACATATAGGGGG	alt_6049_new	31	44	48	43	55	36	53	38	63	42
AAGCTTGCCGGGGATA	alt_6049_new	8	18	18	15	11	17	17	19	30	12
TCCAAGCCCCCGGATT	alt_6049_new	0	0	0	0	0	0	0	0	0	0
CGCCTTGATATTAGGT	alt_6049_new	20	26	25	23	20	11	25	13	31	12
GTATTGCGAGCCGCAA	alt_6049_new	28	51	42	21	42	28	33	25	42	38
GTTACTAGGATGTAGG	alt_6049_new	31	45	33	18	42	30	47	27	41	24
CGTTCAATGAGAGACT	alt_6049_new	9	10	8	5	5	5	8	8	19	5
TACAGTCTCTCATCGC	ref_6049_new	7	15	5	6	13	6	13	7	19	8
CGATCCGCTGATGGCA	alt_6049_new	126	131	130	123	105	98	160	88	153	92
TGCAGCCGGTCGAGCC	alt_6049_new	59	213	122	76	225	70	286	69	275	61
CATCGCAGCGTTCCTC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GGTTCGCCTACTTTCC	ref_6049_new	17	22	29	17	28	13	20	18	22	12
TGACGATCAAGGTCAG	alt_6049_new	13	25	16	14	18	13	17	13	8	11
CGTATTATTCACTATT	alt_6049_new	44	74	39	38	72	51	100	37	77	41
CTCTTTTATTTTGGTG	alt_6049_new	159	172	145	126	215	139	206	116	209	110
AGCCTCTGGGGTGGTG	alt_6049_new	32	62	48	42	61	51	74	38	73	41
TAAGTCTCATTGGATG	alt_6049_new	8	17	14	11	16	7	15	9	20	12
TATCATGTACTTAATA	alt_6049_new	24	39	38	21	34	27	35	30	30	30
GGCTGAGCTTGTTCCG	alt_6049_new	69	81	85	80	98	61	85	68	116	73
CAATCCACGGAACTCT	alt_6049_new	76	77	69	76	102	47	95	64	108	55
ATAGTCGGTCGGACAG	alt_6049_new	20	28	36	20	21	24	30	40	32	18
CATGGAACTTCTGTTA	alt_6049_new	7	12	7	4	10	11	6	9	13	5
TCGAATGCACACTGAT	alt_6049_new	20	30	14	12	36	15	29	14	46	11
CCCGCATAGCATCCCG	alt_6049_new	13	15	8	13	21	4	11	12	24	13
ATGCTTTGTCGGTCTT	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GGGCCCATTCTTGGAG	alt_6049_new	48	104	82	56	90	74	85	55	88	65
TAGTAGGTCTAGGAAT	alt_6049_new	22	27	34	23	23	20	48	18	29	23
TGCAGGAGTCACAACG	alt_6049_new	69	110	89	67	102	83	98	80	111	65
GTAGATATTTATACAT	alt_6049_new	54	64	44	47	57	59	99	59	99	41
CAGAGATTCCCTGAAC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
CTTAGCTCAAGCTGAA	alt_6049_new	0	0	0	0	0	0	0	0	0	0
CCTTTCGAACAGTTGT	alt_6049_new	0	0	0	0	0	0	0	0	0	0
CAACCCGCCATTCGTT	ref_6049_new	394	475	500	400	496	405	537	396	472	389
CCGCCACACATAGAGG	alt_6049_new	9	13	9	7	5	9	9	7	17	8
TTCGGCAGACGGTTAG	alt_6049_new	19	30	29	15	25	21	29	15	19	13
TACATATAAGACTGCC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GTAGGGACAATAGTCC	alt_6049_new	5	8	11	8	16	13	17	6	15	10
TTCGGTTTTCTCGCTG	alt_6049_new	150	148	145	123	165	105	156	129	148	92
TAGTAAAGACTGGCAC	alt_6049_new	12	27	21	11	21	10	21	16	33	16
GTCAATGTCAGCTCGA	alt_6049_new	11	27	19	21	28	19	20	19	22	16
TATAACCGTGGACTTA	alt_6049_new	0	0	0	0	0	0	0	0	0	0
TACTTCGTAGCAACTG	alt_6049_new	20	31	30	35	37	14	38	40	39	18
TCATTCAGGTTGGGGC	alt_6049_new	0	0	0	0	0	0	0	0	0	0
GGCTGAAACTGCAGGC	alt_6049_new	0	0	1	2	1	0	1	0	0	1
CGGTTCGAGCGTTATA	alt_6049_new	0	0	0	0	0	0	0	0	0	0
TTTTACAGTTGCCTAT	alt_6049_new	0	0	0	0	0	0	0	0	0	0
AGTTGGAATAACCTTT	alt_6049_new	78	92	82	69	74	68	79	57	95	62
CTTACGTCGTTTTGGT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
GCGTCGTGTCGTGCGC	alt_5691_new	5	22	7	11	13	6	7	6	15	1
TCCTCCGGCGCGTTAA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TAATGGCCCGTGCAGA	alt_5691_new	94	101	107	85	111	69	117	93	130	85
GTGCTTCCTATTCCTA	alt_5691_new	46	79	46	30	85	53	70	30	83	49
ACAACACAGCAACTTC	alt_5691_new	15	27	8	18	22	12	16	3	23	17
GTCGTTGAGGACGGTC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CCTCTTCAAATTCTCC	alt_5691_new	10	8	12	7	12	5	17	6	6	7
GACACCAGGAGCACTG	alt_5691_new	9	48	23	15	41	11	51	12	58	11
CTACACCAGTACTCGA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
AGCGCTCGTTCGGACG	alt_5691_new	13	19	16	10	18	11	14	7	23	10
ATTAATAGGTAATCTA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TGAGACCCTCGGTGCT	alt_5691_new	2	3	0	0	1	0	0	2	2	1
TCGTGGTACTTTTGGG	alt_5691_new	16	34	28	26	37	16	37	18	40	10
CTTCAGGTTTGCTCGA	alt_5691_new	67	118	62	56	123	47	127	48	118	51
TTCATCATGTAGAGAC	alt_5691_new	1	10	8	7	11	5	4	5	9	3
CCATTTGTTTTCATCT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
GGACCTGACCAGTACT	alt_5691_new	24	44	25	37	64	18	54	22	80	15
GTCTAATGTGGGCATT	alt_5691_new	3	7	5	3	7	9	9	7	6	5
TCGTCGGATGTCCACA	alt_5691_new	8	11	6	12	12	10	20	5	21	10
AGGTTGGTCTCTTCGC	alt_5691_new	166	260	212	131	234	159	263	142	245	154
GATCACAGGTGCTTGT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
ATCGCCTCCCGGTCGG	alt_5691_new	3	7	3	8	4	4	2	2	2	1
TCATGGTTGGTATGAT	alt_5691_new	26	34	13	27	39	27	41	19	29	15
CATGTGACGTCGAATT	alt_5691_new	55	94	81	66	94	60	87	42	121	68
GGCCAAGGGAAGGAGA	alt_5691_new	10	11	7	9	14	12	18	19	3	8
GAAGACTACCCCAGGA	alt_5691_new	0	9	2	7	7	5	9	4	14	5
GGCGCGGCATATACTG	alt_5691_new	4	10	3	6	14	8	3	2	11	3
TCGCGGTATTTATGAC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
GGCGTCTCTACTGACC	alt_5691_new	4	17	7	4	13	10	14	5	12	4
CGTACACCTATTATTA	alt_5691_new	17	18	32	19	37	22	37	22	38	16
CACATTTTCCATTGGT	alt_5691_new	36	43	34	22	31	19	52	29	34	27
TAACCGGGAGTTTCAG	alt_5691_new	2	3	1	0	3	2	8	2	4	1
AGTAGCGTTCAGATGT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CACTAGCCTTCTTCCT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
ATACGTGGCTAGGGCA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CTAATAACTCTGGGGA	alt_5691_new	17	24	24	27	33	22	36	10	23	13
TCCTGGTGCTGTTGCG	alt_5691_new	24	26	35	25	45	26	32	13	36	21
ACTCCGTCTGACCGAT	alt_5691_new	0	1	0	1	0	2	2	0	2	0
TCTACCCCTTCTCGCC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
GAGAAGTTAACTTCGT	alt_5691_new	62	99	70	85	130	69	102	67	116	62
TTCACGGTTCGCACTT	alt_5691_new	127	282	180	158	343	150	304	120	301	121
GTTTACGCTTACCTGC	alt_5691_new	4	28	3	2	35	6	35	6	39	4
AGTTAACGGATCATCC	alt_5691_new	11	14	21	11	25	12	16	11	9	11
CGATGATGCTGCAGAT	alt_5691_new	45	43	46	40	38	50	52	34	42	35
CTATTCTTCATCCGTC	alt_5691_new	27	61	33	21	63	23	40	20	51	21
GCTGTCTGGTTATAAA	alt_5691_new	52	77	48	42	76	50	56	26	72	28
GGTTTTAGCGGGACGT	alt_5691_new	59	69	55	45	65	48	90	46	86	49
TTTTTCGGTTGGAGGC	alt_5691_new	9	6	6	5	6	3	10	3	4	2
GAGCCGGGTTACAGAA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
GCCCGTGAATTAACGG	alt_5691_new	2	6	0	3	4	1	3	1	4	5
ATTATCGTGGCGGATG	alt_5691_new	6	14	14	10	10	10	11	4	9	3
TCTTTGGCTCAAACTG	alt_5691_new	31	38	33	32	56	25	54	20	55	13
ATGATCAACCTCATGT	alt_5691_new	15	26	15	18	28	24	27	13	23	22
TAGGTCTACCCAATCA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TGATGGAGGTGCACAT	alt_5691_new	4	4	2	3	3	0	3	1	0	2
TCGAATCTGGACGGCG	alt_5691_new	1	5	7	9	8	8	1	4	10	2
AAGGAGAGGATTTCGC	alt_5691_new	257	368	318	283	397	255	359	277	380	240
TATGTGACCGGTCACA	alt_5691_new	18	19	21	23	22	17	24	14	18	16
GAACCTGGCCGGTGAC	alt_5691_new	4	15	10	9	9	3	15	10	5	6
TTTCGTGGACAATTAT	alt_5691_new	86	115	73	73	117	72	145	58	112	62
CCATCCTCTCACTTCT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CCGTTGGTTACCCCAG	alt_5691_new	49	56	78	54	74	52	69	46	104	58
TCTACTTTGTTAGTGC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TGGTTTGGAAACTCGG	alt_5691_new	33	52	36	37	45	26	53	35	54	17
ACGAGATAGTATTTGT	alt_5691_new	1	0	0	0	0	0	0	0	0	0
ACGTAGATACGTTAAC	alt_5691_new	11	8	12	6	14	2	22	4	21	8
TATAGCTGTATGCCTG	alt_5691_new	4	4	2	3	6	3	4	2	10	2
GGGCATCGCCGTATCT	alt_5691_new	17	18	15	19	23	19	30	9	16	12
CGGCAATAAGGTAATG	alt_5691_new	36	81	61	49	54	43	65	59	68	41
TCAAGATTTTCTATAT	alt_5691_new	26	58	32	26	53	49	40	21	46	25
CATCCCAGTAGCCTAT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CAGCACATTGCCCGGG	alt_5691_new	8	14	15	9	19	7	29	8	24	5
TTGGTAGCACACCAGT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TTGCCATTTGTGAATT	alt_5691_new	16	17	10	11	22	13	35	15	26	19
TAGTATGTTGGGTGGG	alt_5691_new	82	109	69	77	91	57	92	67	116	62
TTTCTTAATCCTCTAA	alt_5691_new	70	109	115	91	160	85	127	96	128	93
TATTATACTGGTACTC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TGTTAGGGTTGCCCTT	alt_5691_new	17	19	12	16	19	10	21	15	25	13
AAGAACCTCGCACAAG	alt_5691_new	29	38	30	26	43	35	52	24	36	29
TTCTATTTCCGGCCTG	alt_5691_new	0	1	0	3	1	5	1	3	3	0
AGATTCTGATAAGCAT	alt_5691_new	32	37	35	25	33	32	31	31	41	27
CTTAATATAGACCTCT	alt_5691_new	3	14	15	17	17	6	8	7	24	10
CTTATTCGCGTTCTAG	alt_5691_new	45	70	63	39	91	52	96	46	90	54
TTTAAATACCGTCCTT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CTTTCACACAGACAGA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
ACCGAGGTTTGGTCAG	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CTCCCAATCAACCTCC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TGGGTACCAAGTTATG	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TATAAAGCAAGTGCAC	alt_5691_new	3	15	5	3	6	3	13	5	8	6
GTGAGGGCTGTTTAAC	alt_5691_new	33	64	48	25	49	32	50	31	61	25
TCGCACGCCTTATTCG	alt_5691_new	2	25	13	13	17	10	22	11	20	8
AAGGTCTATAATAGAG	alt_5691_new	3	5	7	4	7	7	12	0	6	3
GAGCACAGGACAACGG	alt_5691_new	183	270	273	169	271	182	256	185	265	154
GCAGGCCCTTCCGGTT	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TCGCACAATGTCTCCA	alt_5691_new	3	4	4	1	2	2	6	1	7	1
AAGCAGTCATATACGG	alt_5691_new	44	74	52	51	98	56	71	46	82	48
TGCGTTTTAAATCGTA	alt_5691_new	39	60	36	29	52	28	39	30	54	27
AGCCGGTGCGAACGGA	alt_5691_new	8	15	10	6	14	13	18	5	40	14
CGCAGGATGTAGATGG	alt_5691_new	8	3	5	1	3	2	9	9	3	3
CATTAGTTTGTATGGC	alt_5691_new	27	42	27	16	38	11	40	14	35	15
TATTACCGTTTACACA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
TGCTCGTTATCCTATC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
GATTTGTACACTATAA	alt_5691_new	54	61	54	35	47	47	62	45	74	37
CGGTGTTATTTTGCGC	alt_5691_new	79	145	116	93	115	81	148	69	131	88
GTGCTCCTCGTGAGGT	alt_5691_new	30	24	23	22	20	22	20	22	27	26
CTTGTTCAAATTCCGC	alt_5691_new	7	27	19	9	24	10	16	10	19	8
CCTGACCGCATTCCTA	alt_5691_new	0	0	1	0	0	1	1	0	3	0
TTATTAATTCAATACG	alt_5691_new	9	8	9	8	7	3	8	3	13	8
GTTTCGCCATTCCTTC	alt_5691_new	24	57	51	31	45	31	56	36	63	33
CGTCATTGAGCTTTAC	alt_5691_new	0	0	0	0	0	0	0	0	0	0
GGAGCGTCCTGGTCCT	alt_5691_new	37	68	52	40	66	41	62	32	55	32
TTACATTGGTCTTTTA	alt_5691_new	4	21	8	9	25	5	20	11	21	8
CTAGCCACCTTAAATG	alt_5691_new	12	83	19	10	108	19	106	19	93	15
ACTTTGGTCGAGTGGG	alt_5691_new	29	40	26	30	41	22	42	25	58	24
TTAGGACTTTGTCCCA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
CAATTTTTTCCACACC	alt_5691_new	28	43	18	23	35	15	32	20	40	19
TTTTACTATGGTGAAG	alt_5691_new	9	8	10	4	12	5	16	7	9	5
GTTCATCGATAAGGAT	alt_5691_new	13	25	14	15	16	16	29	10	23	14
CTTGTGATTCGCTCAG	alt_5691_new	0	0	0	0	0	0	0	0	0	0
AGATCCTGGTTTACCA	alt_5691_new	32	55	33	21	35	18	42	21	59	32
TGTAGTATCGGACAAC	alt_5691_new	5	12	7	8	14	3	14	8	22	11
GGAACCGTATGGGTGT	alt_5691_new	5	8	4	1	4	1	3	0	4	5
TATCAATGCCATATAC	alt_5691_new	0	7	3	0	3	2	3	2	3	4
ACTTTACCCGCTTACA	alt_5691_new	34	74	36	27	62	32	47	25	49	48
CGTAACCCACTTATGG	alt_5691_new	34	51	39	34	40	38	51	26	56	24
CTGCTCTCGTTACGTT	alt_5691_new	134	192	174	156	212	141	203	138	249	114
CCATCGTACGCAAAGT	alt_5691_new	15	21	13	15	14	9	25	15	21	22
GACCGCACTGGAGTCA	alt_5691_new	37	116	56	36	89	43	126	47	122	42
GGGCCAAGTCACTACA	alt_5691_new	0	0	0	0	0	0	0	0	0	0
ATTGCTTTGTGCCGTG	alt_5691_new	10	14	4	5	9	4	13	5	10	6
TATGAAACTTTAAGTT	alt_5691_new	0	0	0	0	2	0	0	1	0	0
CCTGCGCGTACGATCT	alt_5691_new	2	4	1	4	8	0	4	1	5	0
TAGTGATTAAAACAGC	alt_5691_new	1	6	3	1	5	10	4	2	5	1
CTTCAAGATGACGGTT	alt_5691_new	22	21	19	22	36	22	49	20	43	24
CCCAACATCCGACTCC	alt_461_fdr	31	26	49	33	18	38	18	30	13	24
TGCGTATAGTGATGAA	alt_461_fdr	30	23	39	35	20	36	30	36	21	34
CGGTAAGCTTCTAGAA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GAACCATTTCTAACTT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCACCGGTTGCTT	alt_461_fdr	40	47	53	40	47	33	42	46	36	47
GGTTTTTAAGTTCTTA	alt_461_fdr	39	34	54	41	34	30	31	30	34	30
ATGTGTATGCGTTGGT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TACGGGGATGCATAGG	alt_461_fdr	71	58	79	57	51	76	62	59	65	51
GTTATGTACCTTGTCT	alt_461_fdr	202	160	254	222	184	193	192	213	195	196
TACTACTGAGATGTGA	ref_461_fdr	148	93	198	155	86	126	97	138	101	111
TAGTATATCTTTATTT	alt_461_fdr	41	21	56	37	32	33	55	21	33	30
GCCTGAAGCCCACGAG	alt_461_fdr	74	53	81	48	41	55	48	61	57	51
CAAACTGGCAAGCATC	alt_461_fdr	16	16	15	6	13	16	13	24	13	14
CAGTAGCGCCTTAGGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTGGCTCCGTAGT	alt_461_fdr	34	23	44	27	38	31	35	42	37	25
CTGTCGCTCCAGGCAA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCGTTTCTGACGT	alt_461_fdr	89	65	98	94	63	71	62	89	72	70
TTTTTCTACTAGTCCT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTCACGTGGTGAAATG	alt_461_fdr	8	20	17	22	11	17	11	11	15	13
GTTTAGGAAAGTACAA	alt_461_fdr	19	9	18	16	8	12	11	14	10	10
GGTACGTAGCGGGAAC	alt_461_fdr	49	37	56	60	34	43	47	54	34	38
TAATAATTAGTCTTAT	alt_461_fdr	24	12	31	25	17	13	21	20	21	22
CTTTGTGTTAACGCGA	alt_461_fdr	14	10	13	14	17	18	19	12	10	15
AATGACATCTGTCTTC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGGCTAGCCCCAC	alt_461_fdr	7	12	6	9	15	5	9	13	14	10
GTCAGTGTCTTACCCG	alt_461_fdr	31	29	46	30	19	32	48	37	37	39
CGACCTTAGAGTGTCT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTCGTTGAGTTGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTAGGGCGGGAG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CGGGCCATTTTCGTAC	ref_461_fdr	23	22	25	25	15	11	17	13	17	13
ATTACAGCATCTCGCC	alt_461_fdr	27	17	39	24	18	20	13	21	23	17
ACTACACCCCGTGTGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTGTCAGGTCCTC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTAGTTCTTCCGC	alt_461_fdr	54	45	68	65	49	57	62	46	61	57
ACGGCAATGAATTGCC	alt_461_fdr	20	9	12	12	6	10	11	10	11	12
AAGGCTCTTCTATCTT	ref_461_fdr	11	7	16	10	12	11	18	14	7	14
CCTCTTATAACCAAGT	alt_461_fdr	14	19	17	14	22	12	15	15	17	9
GAAGCTTAAAGAGGTT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CGATTCCGCGAATTGG	alt_461_fdr	19	25	41	42	23	36	22	35	33	31
ACGGGATGGACCTGCC	alt_461_fdr	2	3	4	8	4	4	3	9	3	5
ACCCAGTTACTATTTG	alt_461_fdr	46	42	45	42	40	26	40	39	27	32
GGGCGCTGCATATCCT	alt_461_fdr	61	62	74	60	63	48	57	41	72	41
TCCCATTTACTACTCC	alt_461_fdr	0	1	5	2	0	0	1	2	3	1
GGTGGCATAGTCTAGC	alt_461_fdr	231	223	267	261	181	256	213	230	205	192
TAAGGGATCTCGCCGC	alt_461_fdr	91	71	96	84	65	68	68	78	68	66
TTCCCGTACCACACGT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTGCGTGGGTTCC	alt_461_fdr	14	8	18	12	7	6	11	6	12	6
TCTTTTACCGGCCAGA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGCTTGCATCTT	ref_461_fdr	149	130	219	177	129	155	161	173	164	149
AGACTGCGCTAGTTAG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GAGGGTAGTTTCGACC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTGAAGTGTACAA	alt_461_fdr	36	35	49	35	34	40	45	37	44	41
CACTTTTTACCTACTT	alt_461_fdr	33	22	26	37	32	37	22	52	25	31
GATTTCCTTGGGCGCA	alt_461_fdr	38	27	28	52	28	34	40	30	34	36
TGTCTCGAGCCTCATT	alt_461_fdr	32	27	42	27	19	25	21	20	24	21
AGCAGCTGACGATTTT	alt_461_fdr	107	89	128	106	87	103	94	77	92	90
TTTTCCTTTAGATACA	alt_461_fdr	24	12	26	21	33	25	21	20	13	12
GGGAATCTGGGCAGAT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCAAAGCCAGCTT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTTGTCTTAGGTA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAGTGTTGTTATC	alt_461_fdr	10	9	5	14	5	11	7	9	15	10
AAGCTAGATTTGTTTC	alt_461_fdr	85	58	112	89	87	83	79	95	90	73
GCTGGCGTCGTTGGGC	alt_461_fdr	11	3	8	5	6	11	3	9	8	5
GGACCAGGCAAGCGGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCTATCTGAGTGA	alt_461_fdr	41	43	55	48	22	54	34	49	45	39
TCTAGCCGCCTACGAA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCATCAGGTGATT	alt_461_fdr	55	30	70	47	39	67	60	57	59	53
GTCACCGCGGGCCTTT	alt_461_fdr	15	39	22	23	43	16	41	31	42	12
ATGTACAAGAACTCGG	alt_461_fdr	3	3	6	11	3	5	8	3	4	7
TTGCCACATCGTTGCC	alt_461_fdr	58	81	82	68	57	70	98	56	83	60
TCACTACTCAGTGCTT	alt_461_fdr	19	12	14	9	13	5	15	15	13	5
GACAATAGTTATTCTA	alt_461_fdr	71	70	83	83	72	74	65	73	85	56
GTCCTGTTAGTACTCA	alt_461_fdr	35	22	25	23	20	22	28	27	21	31
AGCTTATGGAGTACTG	alt_461_fdr	33	28	45	32	36	32	26	33	34	21
GAGACAGGTTATTGTG	alt_461_fdr	25	21	25	23	18	20	28	21	22	24
ACCGATTCATCCCGGT	alt_461_fdr	7	3	4	6	10	6	7	4	10	2
CTACGCCCGAAGAGGC	alt_461_fdr	20	17	19	18	17	18	15	23	23	15
TTATTGCATTAGGTGA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTATCTAAAACCGCGA	alt_461_fdr	15	21	20	16	12	9	14	13	10	9
GCCGATCCCTGAAAAA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTAGAGGTGTTACTAA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GTTATCATATTCGGCT	alt_461_fdr	27	21	29	31	19	29	31	24	33	21
CGTTTTGGTGTTTGCT	alt_461_fdr	32	17	36	38	25	28	36	36	20	23
ATCCCTTGAGGAGGGA	alt_461_fdr	34	31	47	26	35	30	28	38	25	35
TACTCTCGCGTTTTGT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTGACGCCGAACAAGT	alt_461_fdr	102	125	124	78	132	103	141	105	152	100
TTCATTAATTAGGCCT	alt_461_fdr	43	40	60	62	49	55	50	74	51	43
TTATTGAGTTAGTCCT	alt_461_fdr	25	21	22	21	22	22	13	13	16	16
TCCAGAGGACTGTGCT	alt_461_fdr	39	51	51	30	72	41	60	30	74	42
CTTCGTTCCATTCAAG	alt_461_fdr	12	13	15	11	17	18	16	13	16	14
CGTATGGGACTTTTAG	alt_461_fdr	70	52	89	68	50	68	39	55	52	55
GGGACTTGTAGTCGCT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTTTGCCACGGTT	alt_461_fdr	53	27	62	41	36	31	57	50	41	38
TGGGGCTATTGATTGA	alt_461_fdr	46	39	50	34	29	44	27	43	27	59
TTCCCTCTTTATTGAG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CGGGACTGACTCTAGT	alt_461_fdr	3	26	12	15	43	6	50	10	46	13
GATCTTCGCCTACCTC	alt_461_fdr	5	9	13	8	9	10	8	5	11	8
GCCAATCCGGCTTTGA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTGGGCTGCTTTA	alt_461_fdr	21	28	34	35	27	28	27	33	30	26
CCTTGGGAACATCGAC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAAGTTTTGTAGC	ref_461_fdr	36	31	47	36	17	37	35	51	32	40
ATGGCGCGCAGTGTAT	alt_461_fdr	24	15	19	19	19	22	6	14	19	15
GTCAGCACCTCATGTG	alt_461_fdr	53	51	62	80	43	55	57	48	62	45
GTCTCGATTGATTAAG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCTTCGTACAAC	alt_461_fdr	35	39	29	44	31	26	37	33	28	25
ATACTAACCCTCGTAC	alt_461_fdr	12	15	17	11	10	15	12	10	25	14
GGCTGTCACCGCTACC	alt_461_fdr	11	8	9	9	10	7	11	8	11	8
GCCGTATTCGCCCGCT	alt_461_fdr	40	32	45	41	35	30	35	35	52	28
TCATTCAGTTACTCTG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
AGACCATCCTTCTGGA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTTGATGTTTAAATCC	alt_461_fdr	16	4	15	21	11	18	14	14	9	18
GTATCGTTTAAGTCGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TACGTAGGTTAGGATT	alt_461_fdr	29	41	67	41	32	54	36	42	40	27
AGGCCGTATCGCTACA	alt_461_fdr	55	43	58	66	47	56	55	54	50	47
GTAATAGCCTGGCTTA	ref_461_fdr	60	62	73	48	68	61	71	49	54	55
GGGCATAGCAAATGGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TTGACCACTTTGAATA	alt_461_fdr	116	115	147	125	108	111	122	110	111	111
TTCCGTCCCCGCCCCA	alt_461_fdr	85	67	104	67	71	63	49	58	62	68
TTTTTGACACGTTAGC	alt_461_fdr	11	21	24	22	17	23	23	16	20	20
AGACCGCCCAAAAGTA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
ATACGGTCCATCACCG	ref_461_fdr	22	17	25	28	18	26	19	22	36	22
ACTCGCTGCGTGCCAT	alt_461_fdr	0	5	0	1	4	1	4	0	9	0
TATAAACACAACTCGC	alt_461_fdr	19	15	40	23	22	25	21	13	28	16
CGCGGTACCCGCTTTA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TTAAATTGCATAGCGA	alt_461_fdr	108	70	99	98	66	85	78	92	72	82
TCGTTGCGATAAGCGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGAGCGGCTGAGC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATTAAGGTTCCG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GACACCTTCACCCCTT	alt_461_fdr	29	33	32	46	35	33	28	32	21	34
CGGAATCGACATTCGT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCCCCTTTTCATG	alt_461_fdr	8	5	10	2	8	4	2	7	9	2
AACGCCAGGGTTTTTG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTAGAATATAATG	alt_461_fdr	8	13	12	10	6	10	14	13	18	17
TGAGTTTTTACAAGGT	alt_461_fdr	55	76	101	90	82	62	59	50	75	61
CCGATCGTCGTGCTCG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTAATTTCTGTCC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTCTGTGCCCCAG	alt_461_fdr	17	18	27	19	16	26	14	20	15	15
TGACATCGGCCTTGTT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTTTACTGTAAGA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCGTCGGTTTTTG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GTAGTGCCTAAACATT	alt_461_fdr	8	1	9	6	8	7	5	4	10	7
GAACATCGACGAACGA	alt_461_fdr	0	0	1	0	2	1	0	1	0	1
ATTTTAACTAAAATAT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TGATTAAATTGGAATG	alt_461_fdr	50	43	77	45	42	51	49	57	38	43
GGGTCCAGCCCTATAC	alt_461_fdr	28	33	39	33	25	19	30	30	24	21
TACCCAGAATCTTTCG	alt_461_fdr	6	8	7	6	4	6	7	6	15	7
TTGCCGGCCGCGTTCC	alt_461_fdr	5	22	9	10	21	8	15	9	21	3
ATCGACCTGGATTCCC	alt_461_fdr	214	173	240	219	192	190	209	171	192	169
CCTGCGCTACAGATCT	alt_461_fdr	5	18	2	8	13	8	8	6	10	13
TAGACACCATGGGGCC	alt_461_fdr	34	26	37	32	29	30	13	22	28	20
GTCCTACCGGACCGAC	alt_461_fdr	51	33	43	47	42	35	38	38	29	40
TTTAGGCGCCCAGTTG	alt_461_fdr	4	4	8	11	5	10	4	11	4	8
ACTACCACTGGAAGTG	alt_461_fdr	29	34	41	37	25	38	27	39	31	33
GAAGAAAGGATGGGGA	alt_461_fdr	128	89	133	124	82	125	116	115	101	97
CGCAGAAAGCCCCTTT	alt_461_fdr	6	17	18	9	15	12	12	14	11	13
AATTATTCGGCTTCTG	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GGACATTGCAACAAAG	alt_461_fdr	1	2	0	4	2	2	1	2	5	2
CCGGGGAGAAAAATAC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGCCCTCCTGTG	ref_461_fdr	35	19	36	26	23	32	35	28	28	23
TCTGATATTGGCGTTA	alt_461_fdr	100	66	132	89	89	100	92	80	91	84
GCAACGTTTCGAGTGA	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTCGCTTTTTGCT	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
CTATTTAAGCTGTGAC	alt_461_fdr	0	0	0	0	0	0	0	0	0	0
GAACACCCGTGGTCGT	alt_461_fdr	10	5	8	4	1	12	2	10	13	11
ATTTTTTCGTAATAAG	alt_461_fdr	80	61	75	65	73	71	76	72	57	64
TATTACCTTTGGTCGC	alt_461_fdr	12	14	18	15	18	17	19	17	23	2
ATTCACCGACCCTCAT	alt_461_fdr	12	8	2	10	4	6	7	7	7	2
TACTTTGATCCTGTAA	alt_461_fdr	14	8	22	16	18	13	19	16	11	12
TTGTGCGTAACGTAGC	alt_461_fdr	31	21	51	31	32	28	27	20	31	27
TTAGTCTCCTCCCATG	ref_5650_new	1	9	3	1	8	1	8	0	1	0
GTCGTGACTTATATCT	ref_5650_new	13	27	22	19	22	11	36	18	29	10
TTACCGAATGTATTTG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CTTGCCATTGTCTAGA	ref_5650_new	0	0	0	0	0	0	0	0	0	0
ATTCTAGACGCAGCGT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CTGCGTCGTTTTTTGC	ref_5650_new	0	0	0	0	0	0	0	0	0	0
ATGCCGGAGCGGCATT	ref_5650_new	2	6	6	4	7	2	5	2	2	3
TATCAGAGGTAGCTTA	ref_5650_new	56	89	49	47	93	44	107	44	109	39
TCTTTGATATCATAGA	ref_5650_new	15	24	18	14	27	6	28	10	17	13
CTTCCGTTACGTCTGT	ref_5650_new	21	46	26	24	40	17	35	23	33	22
TATTATAATAATTTGC	ref_5650_new	50	125	90	69	138	73	141	69	135	56
TTGCACTCTAAAGCTT	ref_5650_new	0	0	2	0	4	0	0	0	1	1
AATGACTTCTCTGTTG	ref_5650_new	10	25	12	12	13	10	12	19	15	6
GGTCCGCTTTAAGCTC	ref_5650_new	35	62	32	35	54	24	66	37	56	22
CCCTTAGTACTACGAT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
GAAGGAATGTCGTTTC	ref_5650_new	7	15	5	5	7	10	9	13	22	5
CCCTGTTATTAATTTG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TTTATTCGATACATGG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
GCGCTCGTTCATTCTG	ref_5650_new	7	7	4	5	12	7	3	2	14	4
GTTAGGTTGCGGGCGT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
AACGCACCCTCCAAAC	ref_5650_new	0	0	0	0	0	0	0	0	0	0
GCCCGCGTGGCTCTTG	ref_5650_new	27	31	25	22	33	23	29	13	30	21
GCGAAGTCGATGATCC	ref_5650_new	9	2	14	7	2	4	2	2	5	9
GTCTACGACTGCAGCG	ref_5650_new	5	13	5	11	11	5	11	2	8	3
TTTGTTTTGATTACCC	ref_5650_new	8	12	5	3	18	14	11	8	15	6
TGCATGTTTTGGGCTG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CTGCTTACAGCGACTT	ref_5650_new	12	24	15	12	14	5	22	17	31	8
CAAATCAGTGCCATTT	ref_5650_new	23	42	31	29	57	33	48	20	73	23
TAGTCTGGAGCATAGA	ref_5650_new	13	50	19	16	44	24	39	20	43	18
TTATGAGTCTGAGTTG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TAGGCTACTAATGCCA	ref_5650_new	6	27	13	8	31	17	34	13	35	8
GACTTTGCTCGCGTAA	ref_5650_new	10	41	24	16	25	9	25	20	19	10
CTGTAATACGTATTAG	ref_5650_new	9	32	10	8	21	5	30	9	28	20
GCTCTGCGCCTATGAG	ref_5650_new	12	23	9	10	19	13	16	12	20	9
TGCCCCGGCTATCATA	ref_5650_new	19	47	20	22	36	25	46	19	48	11
CTAGACACTTGGACTT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TGATAATTGTGTTCTC	ref_5650_new	16	37	17	15	33	22	38	16	36	18
CCGCGGTTCAGGGCAG	ref_5650_new	90	135	77	83	148	89	158	94	178	63
GGGCTCTTCGGCTTAC	ref_5650_new	12	10	6	6	12	2	16	16	14	4
TCGCTTATGCGTAGAT	ref_5650_new	24	41	21	25	41	18	40	17	29	24
AGGATAACCCCTATAT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TGCTTATACTGTTGCA	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TGGCTATAGGAGAATG	ref_5650_new	20	36	17	16	31	16	28	15	48	17
TATTTCAATCTCGCTA	ref_5650_new	17	20	12	15	31	20	30	7	25	15
TGACATGGAAGTCGTT	ref_5650_new	73	144	94	87	102	88	156	79	143	80
GGCTGTTCGTCCTCGC	ref_5650_new	15	15	15	12	16	4	20	8	27	13
AATGTGATTTACTCAG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
GCTCGTCCCTATAGGA	ref_5650_new	9	15	16	12	15	15	22	21	35	8
TTTCCTTTATGATATT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
ACCTCGATCTTACCGC	ref_5650_new	1	1	1	3	8	0	11	0	7	3
GGCCTGCGTCTCCACC	ref_5650_new	4	4	7	10	10	5	6	5	8	2
GTGTCGCGGGACTTAC	ref_5650_new	16	36	12	17	31	14	37	18	32	11
CGCTGACAGCAACTTG	ref_5650_new	60	115	65	65	91	54	107	53	103	39
GTCTATTTTTAAATGT	ref_5650_new	1	4	1	0	0	0	0	1	0	0
CCTTTTCTGTTTGAAG	ref_5650_new	4	4	0	2	3	2	5	0	1	0
CCATCGCGTGAATCTC	ref_5650_new	4	13	8	7	21	2	18	9	15	4
GAGTTTACAGTAAACT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CGCACCTTGGCGCGCG	ref_5650_new	57	73	59	56	97	40	125	52	122	56
GCGCTGGTTACTACGT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TTATTCCAATGACATT	ref_5650_new	46	52	29	33	50	23	46	27	35	20
GTTTCCGCGTGAGATA	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TTGGACTAAATTTAGG	ref_5650_new	23	62	51	24	66	39	70	42	79	29
CCGCGGTTCAGGTCAG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TCGCAAGCCTCTTTCA	ref_5650_new	6	28	11	13	14	6	23	11	14	10
TTTACCAGGTCCCCGT	ref_5650_new	14	28	16	18	36	17	31	7	31	17
CGTTCGCACGGGTTGC	ref_5650_new	6	12	3	4	12	8	11	3	6	2
ACCCCGCCACTCAGGC	ref_5650_new	9	21	9	5	26	8	31	11	30	9
CCTCGACTGTTCCTCA	ref_5650_new	0	0	0	0	0	0	0	0	0	0
AATGAAGCACGCCCTA	ref_5650_new	4	14	9	10	7	8	13	5	7	2
TTGTAGAGCAGCCCGG	ref_5650_new	6	20	7	7	9	7	12	9	11	7
TGGTTGACACTCAATC	ref_5650_new	63	135	76	72	153	67	136	48	144	66
CCATGCTTCTTGCAAG	ref_5650_new	1	3	1	0	4	2	4	3	5	5
GTTGAACGATTTCCCC	ref_5650_new	19	25	29	15	40	21	25	13	35	14
GCATCAGGGGGTCTTG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CGCATATCCAATATAG	ref_5650_new	26	45	28	19	51	12	36	17	37	17
TACAGTTGTCACATTC	ref_5650_new	1	7	4	2	4	2	4	4	9	0
TCGAGTCAACACGTTT	ref_5650_new	5	14	8	6	19	7	19	10	11	9
TCAGCTGCAGATGCTG	ref_5650_new	13	14	17	4	21	10	13	4	21	8
TCTTCCTCAACACGCA	ref_5650_new	12	18	24	13	28	10	35	14	18	10
TCTGACTTATCCGGTA	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TTTAGGCCCAGTCCCC	ref_5650_new	0	0	0	0	0	0	0	0	0	0
AATTTTGGGGCTCTGG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TTGGGTCAGGTTTTCA	ref_5650_new	31	46	43	21	60	23	61	25	69	29
AGCGGGGGGGTCGCAT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CCTTCATTCCCCAGGG	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CGATTCATTGTACTGG	ref_5650_new	11	11	25	5	18	7	8	6	12	10
TAGTAGGATTTTTCCA	ref_5650_new	27	39	35	28	48	24	36	33	40	19
CTTTTATTCGGGCTTT	ref_5650_new	10	17	16	2	15	11	12	7	18	9
TTGCACTATGTTTATG	ref_5650_new	12	17	17	16	25	12	27	13	43	11
AGCGAAAAAATCTACT	ref_5650_new	10	30	22	19	30	11	17	19	39	17
AGCATGTCGAACCCAC	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CCGTTGCCTCGTTTGA	ref_5650_new	5	3	6	3	10	7	6	7	8	2
GTGTTTCAATAACCCA	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CGGTGTTCCACTGTGG	ref_5650_new	1	19	2	2	24	5	20	4	15	6
ACATGCTGCCCTCCCA	ref_5650_new	0	0	0	0	0	0	0	0	0	0
TCTGGATTAAGATGCC	ref_5650_new	38	70	37	30	46	44	44	18	62	34
CTTGACACTTGGACTT	ref_5650_new	0	0	0	0	0	0	0	0	0	0
CATCCACCCGGTTAAA	ref_5650_new	31	54	28	23	57	33	70	33	85	16
TTGTGCCTTTACCTAT	ref_5650_new	8	13	7	5	14	7	12	9	16	2
AGTGGATTCGTGTTCT	ref_5650_new	12	17	8	14	29	12	16	5	17	8
ATGATGGAATCTCCAT	ref_5618_new	0	3	1	2	5	4	2	2	4	2
ATTGCGTCTAGAACAG	alt_5618_new	0	0	0	0	0	0	0	0	0	0
TCACTCGGGCGAAGGG	alt_5618_new	0	0	0	0	0	0	0	0	0	0
CATGGGGTATACTTTA	ref_5618_new	0	0	0	0	0	0	0	0	0	0
CCACTTCAATGTGGAC	ref_5618_new	16	23	9	17	33	15	20	10	23	12
GTATATGTAAGGTCTC	ref_5618_new	0	0	0	0	0	0	0	0	0	0
TACGAGACTTTCAATA	alt_5618_new	161	226	186	146	217	132	193	153	224	127
CATTCACAGTTTTAAC	ref_5618_new	50	95	70	44	121	52	102	51	106	56
GAGGATAAGTTAGTCA	ref_5618_new	23	30	30	15	25	14	36	19	27	17
GTCTCATAAATAATAT	ref_5618_new	23	22	24	12	36	17	23	17	37	19
TATCCCTGCCGGTTTG	ref_5618_new	74	112	99	91	109	60	159	53	152	59
CTTATTGGCTGACGTC	ref_5618_new	0	0	0	0	0	0	0	0	0	0
TTATAAGCATGTGTGG	alt_5618_new	24	29	17	16	32	14	32	20	24	16
CCAAGTTCCGGCGATA	ref_5618_new	66	117	74	61	98	47	119	49	92	57
GGTCTGTTGATTGTGT	ref_5618_new	21	62	33	39	67	31	54	24	91	23
TTATCGCAAGCGTATT	ref_5618_new	25	51	29	34	36	24	52	23	41	37
AGTTTGGACTTTCTTA	ref_5618_new	30	58	38	22	62	22	66	20	64	24
TTCGGGGTTATTGCGT	ref_5618_new	0	0	0	0	0	0	0	0	0	0
TCGCTACCGTAAGTAC	alt_5618_new	0	0	0	0	0	0	0	0	0	0
TTCCCCCGTCTCGATC	ref_5618_new	6	27	1	2	10	3	9	2	19	3
TATGTTCGGCCTAGTC	ref_5618_new	18	23	13	10	12	15	28	14	31	18
GGCGACGTTTGCCTTT	ref_5618_new	78	129	76	80	135	83	142	67	162	74
CCTGGAGGGTGATTTA	ref_5618_new	17	25	23	20	36	26	39	17	29	18
TTATGCTAGATTCTTG	ref_5618_new	18	25	12	18	27	15	25	12	21	7
CATTCCGATCCTATTA	ref_5618_new	10	11	20	20	19	17	21	7	18	15
GCCCCAATATGGGTGT	ref_5618_new	7	17	10	12	23	11	20	12	28	15
TGTTGTGTTTTCCCCG	ref_5618_new	23	48	33	22	48	27	48	27	62	17
TGCTACACGCTGGCCA	ref_5618_new	0	0	0	0	0	0	0	0	0	0
CGCTGCGGAATTGCTG	ref_5618_new	23	38	32	22	25	14	42	22	46	19
AATCCCCGAGATTGTC	ref_5618_new	17	30	20	17	22	11	28	11	32	13
CTGCTCGTCCTGTTAT	ref_5618_new	6	8	4	6	11	3	5	4	4	6
CTGCTTGCGCACTACC	ref_5618_new	18	23	9	15	23	10	37	13	27	6
GTCATATGCTTTAACT	ref_5618_new	7	1	1	2	3	3	4	1	5	3
ACTGGTGTCCCAAGTA	ref_5618_new	0	0	0	0	0	0	0	0	0	0
GTAAAGTTTCTGCACG	ref_5618_new	44	70	46	48	71	41	85	47	86	46
GGCGTTGGCCTGACGG	ref_5618_new	0	0	0	0	0	0	0	0	0	0
GGGATGGGGCTCTTTC	ref_5618_new	0	0	0	0	0	0	0	0	0	0
CAGGCGTGATTCCTTT	ref_5618_new	0	0	0	0	0	0	0	0	0	0
GCTGCTCCGGATTTGT	ref_5618_new	5	2	4	2	7	0	4	3	5	1
TTATTAAGCTTGATAT	ref_5618_new	14	21	17	14	20	11	23	14	25	11
GTTGGCTCCATTCTTG	ref_5618_new	12	17	14	14	18	14	9	10	23	11
AACGCCGGCTAAACGC	ref_5618_new	25	29	25	20	18	21	29	18	36	18
CCTTTCGAATGTATTT	ref_5618_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTTCTTCATTT	ref_5618_new	6	11	6	5	6	8	12	4	14	3
ATACAGGGAACATTTT	ref_5618_new	7	11	9	3	14	3	20	9	17	8
GCCCGCAGTAAACCTT	ref_5618_new	4	10	6	5	5	2	12	2	6	5
GTTCGGGGAAGGTGTC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTACCGTAGCACA	ref_2208_fdr	9	11	7	15	13	6	13	5	19	7
GCCTACCGGTTGGCTC	ref_2208_fdr	7	12	7	11	19	16	6	8	12	6
CCGTACTATCTTTCGG	ref_2208_fdr	23	46	53	42	46	27	29	30	37	27
ATTCTTGCACGGTCAG	ref_2208_fdr	19	34	32	32	36	17	29	20	32	21
TGATCGTGGTGTCCTT	ref_2208_fdr	25	40	24	30	28	25	24	28	36	23
ATATACTCGCTCTATT	ref_2208_fdr	44	60	72	52	72	49	61	48	63	56
GAGAAACTGGCTACAA	ref_2208_fdr	8	9	8	11	9	9	10	10	5	3
CCGCTAGAATCACTAA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGATACTCCACCC	alt_2208_fdr	7	15	17	9	14	13	15	5	11	9
CTTGGGTTCTCTCTCC	ref_2208_fdr	13	22	13	11	18	7	31	18	29	12
CACCCATTTTTAGGGG	ref_2208_fdr	84	84	90	71	97	73	114	53	99	55
TTTGCTTGCTTTGCGC	ref_2208_fdr	26	21	25	20	29	23	24	19	31	17
TTTACTCCAGAGCCAT	ref_2208_fdr	50	47	54	31	61	43	50	38	59	22
TAAAGTTGCCATCACT	ref_2208_fdr	39	42	51	34	42	26	29	24	51	27
AACTGACGGCGCGCCC	ref_2208_fdr	68	82	103	86	87	52	90	59	94	58
GTGATAACGTCGTATA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTGATTTCCTCTA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCATTACCAGCCG	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCAATTGCCTACC	ref_2208_fdr	15	32	17	20	25	19	28	16	35	10
TGCTGACCACTTTGCA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GGCCAGAATGCCGCAC	ref_2208_fdr	18	12	18	11	16	12	14	6	11	20
CACAGCTCACATGAAA	ref_2208_fdr	21	44	27	27	48	16	45	18	55	18
CCCTCGAGGTATATAA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGATGCTAGGTCT	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GGTAATAGTCTATCCG	ref_2208_fdr	18	20	20	21	28	22	30	18	36	20
AACTTTTGGCTTACGG	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTCGTCGGTATA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GGTTATGCACACCTTA	ref_2208_fdr	13	38	9	10	38	8	40	9	41	6
TGGTTATGGTGAGAGT	ref_2208_fdr	8	15	17	16	16	15	20	12	20	4
TATCATCCTACTACCG	ref_2208_fdr	13	29	22	12	32	11	29	24	35	15
TCTACTTACTTGAGCA	ref_2208_fdr	3	0	1	1	4	0	0	0	3	1
TACCATCATTTGCATA	ref_2208_fdr	15	20	17	19	30	5	16	14	26	16
GTCACTTTTACCGATG	ref_2208_fdr	38	55	48	51	41	33	53	36	71	44
CTATCTGAATTTGTTA	ref_2208_fdr	24	27	41	26	25	26	21	30	31	20
GGGGGTCGAATGGTTC	ref_2208_fdr	10	10	17	9	10	13	10	9	8	15
TTTTTTGCTGATGATG	ref_2208_fdr	20	19	15	19	21	15	24	20	21	20
GTCGCGTCTAGAAGAC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCGTTCTCTATGT	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGTTTCGAAAGCT	ref_2208_fdr	16	11	12	11	17	14	9	14	19	9
CGCCCGTTACTTGGAG	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
CGAGGTGTTCCCCTTT	ref_2208_fdr	28	33	28	30	42	22	38	29	32	29
TTACTCGCATGCGTCC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
CAGCCATGCAAATAAA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TTATGTGATACGTGCC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
AGATAGTACTTTTTAA	ref_2208_fdr	73	109	87	80	97	79	102	71	96	54
CTCCCGATATAAATGA	ref_2208_fdr	32	25	41	22	27	22	37	18	27	24
TTACCTTCCGGGTCTT	ref_2208_fdr	43	44	54	28	50	31	55	29	40	38
GGAGCTGCTGGTTTAT	ref_2208_fdr	24	35	28	25	29	20	24	8	30	16
GGCAAGTCATGCTGGT	ref_2208_fdr	64	56	101	78	60	52	77	58	75	54
TCCTACCGATTAACCG	ref_2208_fdr	19	30	22	16	24	21	13	13	22	18
TCTGGAGGGCATGATC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GTCGAGTTCCGTGTCC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GATCGCCCTTTCTCCG	ref_2208_fdr	20	24	25	16	23	25	25	24	33	24
AAATCCCCATTGCGTT	ref_2208_fdr	11	15	12	12	18	12	7	6	4	3
GTTCGCTTCTTATGCC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
CAATGCCTCGTCCTTC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
ATGAGCGATATTTAGC	ref_2208_fdr	28	20	36	37	22	28	34	34	34	19
TGCATAATGGTTCGTG	ref_2208_fdr	12	19	19	5	26	13	15	12	23	6
GATAGATAAGCACTGA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGTAATGAGTTCT	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GCACGGAACTGCTCCC	ref_2208_fdr	0	2	3	0	1	1	3	0	1	0
AGGTTGCTATTGCGTA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GGGTAAAGCCGTGTGG	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGGTGCCATAAAT	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTCCTCGGGCTTG	ref_2208_fdr	5	7	3	2	15	11	4	3	6	6
TTTCTAATTTAGATCC	ref_2208_fdr	7	3	7	6	13	5	12	6	14	8
TTACGTCTTACGCACT	ref_2208_fdr	28	20	30	21	27	19	17	20	23	29
TTCCGCTGTATTATTA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTTCGTACGGGAC	ref_2208_fdr	20	22	25	10	19	23	27	15	20	12
TGCATTGAGCCATTAA	ref_2208_fdr	25	48	32	40	42	43	53	21	46	31
GGGACCTACCACAGCG	ref_2208_fdr	18	14	12	14	13	9	8	12	15	10
CAGCCATTGTATATTT	ref_2208_fdr	8	20	13	11	27	6	25	7	14	11
TGTGTGCACGGTCTCG	ref_2208_fdr	39	29	43	35	43	42	45	32	58	35
GAGTATCTCCCATTGT	ref_2208_fdr	2	3	4	3	1	0	3	2	3	3
AGCCTATCGTGTTTAA	ref_2208_fdr	15	29	31	24	34	18	41	13	34	6
ACGGTTGCCACATGTG	ref_2208_fdr	9	32	14	10	31	12	15	15	17	14
CTCGTTTGGATCGGAT	ref_2208_fdr	17	23	19	20	20	15	22	15	13	18
GCCAGTTCTTACAATC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCACCTCAATAAA	ref_2208_fdr	18	20	19	15	16	16	14	17	18	26
CGGGCTAATGCGATTG	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TATTTGAACAGATTTC	ref_2208_fdr	12	15	12	18	25	12	7	13	22	8
AAGTATGTTTGCATGT	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
CACCATCGGCTGGCCT	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
AACCCCATACCAGACC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAACTAGATGGGT	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTTTTAGGATCGG	ref_2208_fdr	9	15	9	10	14	8	12	8	13	8
TTTCGTTCTCAAGAAC	ref_2208_fdr	47	76	76	66	69	59	79	54	59	60
ATGAAAGGGGAGGCGG	ref_2208_fdr	21	18	20	15	15	13	19	20	29	12
TATAGGAGTTCTGAAA	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
ACACGACCATCCCACA	ref_2208_fdr	21	26	18	22	19	18	23	24	26	18
TTTGGTCGGTGCTTGC	ref_2208_fdr	0	0	0	0	0	0	0	0	0	0
TACCGATGCTTCTCGA	alt_4000_reverse	51	100	70	57	92	58	102	74	84	70
GCTATCCACATTATTA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTTTATGCAACC	alt_4000_reverse	61	110	76	59	95	57	121	49	121	58
TGGGACTGGCATATGG	ref_4000_reverse	45	56	64	44	66	44	66	53	49	42
CGTCCCGTGGGTAGAA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTACGGCTAAGCGAAA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTTATAGCGTATT	alt_4000_reverse	5	9	10	8	14	3	9	7	12	7
TATTTTTTTATGTTTT	alt_4000_reverse	22	26	13	13	18	22	31	19	27	19
CTGGCTACATGGTTGT	alt_4000_reverse	35	52	50	29	54	34	55	43	53	27
TTATCGCGTTAGTTAT	alt_4000_reverse	32	37	41	27	65	42	55	29	69	32
CGGCTTCCTGGTACTG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
AACATACGCGCACTTA	alt_4000_reverse	56	99	70	59	119	65	94	56	116	53
TGGTCGGCCGGTTAAA	alt_4000_reverse	7	22	8	6	12	5	8	3	20	8
GGTATCTTAAGCTATG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGGTTTTTGTTT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTGCTGTAAATCC	alt_4000_reverse	6	4	6	9	6	6	8	5	12	6
CGCAGGTGTCTAGAGC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCGCAATGTCAGT	alt_4000_reverse	7	15	20	6	19	7	12	6	14	4
GAAAAGGATCTTCCGA	alt_4000_reverse	27	33	33	39	46	32	30	32	30	23
GCCTCCTGTTGTTCTG	alt_4000_reverse	13	57	36	25	62	23	48	27	65	24
TTACCCCTAGTACACC	alt_4000_reverse	3	8	3	0	2	0	0	0	2	1
TTGTCTACCTGATCCA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGCCACGGATTTAAAT	alt_4000_reverse	42	85	62	40	102	35	89	48	120	37
GTTCCGGATCATCTGT	alt_4000_reverse	13	2	9	3	12	5	7	8	11	3
CTTCGTAGCAATATTC	alt_4000_reverse	66	62	66	51	61	60	70	37	76	47
CCGATTTTGGTTCATG	alt_4000_reverse	9	21	13	8	22	15	20	8	33	3
CGGGGTCTCTTCGGAG	alt_4000_reverse	38	34	40	34	33	31	45	23	43	32
CTTGTGAAGTCTAAGT	alt_4000_reverse	20	23	17	9	24	20	28	17	40	18
CGTACGGCCAACTGGG	alt_4000_reverse	31	51	30	28	39	29	32	34	42	27
TGTTACAAAACTATTT	alt_4000_reverse	7	22	11	13	18	16	19	11	12	14
GACGCAAGGTTAGGTC	alt_4000_reverse	41	29	35	31	50	50	53	31	50	33
TCTAACTTGACAGGGA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TGCGATTCACCTTCAG	alt_4000_reverse	134	149	156	116	152	129	198	105	159	115
AAATCCGTTTGTTTAT	alt_4000_reverse	11	14	12	12	21	13	19	7	14	11
TATGGCAAGCACAAAT	alt_4000_reverse	6	13	10	6	10	4	6	7	10	2
TTCCCTACTCTTTCAA	alt_4000_reverse	16	30	27	11	29	15	34	6	29	13
CAGTATGGTTTGGCCT	alt_4000_reverse	18	40	20	19	40	25	39	11	46	19
GCCAGGACTTATATTC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGTGCGATTCCTGTAC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCCCTCCGATCAA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GCTGTCGCTAACCTTC	ref_4000_reverse	6	14	7	12	25	9	15	8	12	13
TAGGACTCAGATCACT	alt_4000_reverse	96	124	135	91	118	90	157	90	127	86
CCCGACCTACTCAGTC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGTTGTTTGTACT	alt_4000_reverse	8	10	12	16	17	16	13	5	17	6
CTGAAGTCAGGTAGGG	ref_4000_reverse	10	11	16	9	16	4	16	10	21	7
TGTTAGGATAATCTGC	alt_4000_reverse	51	61	71	52	68	38	59	59	104	54
CTACCTCCTTGGCACG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGGGTATTTGCCT	alt_4000_reverse	22	34	28	31	40	26	33	30	42	18
GTCTGGCCAGTCTGGT	alt_4000_reverse	49	89	67	58	103	59	79	54	91	64
CAATTGCGGTCACCAT	alt_4000_reverse	18	51	14	9	70	13	49	13	64	14
CGCCTGTAGCTCAGTG	alt_4000_reverse	35	36	38	22	53	23	48	23	55	27
GCCAGTATGAATTCCG	alt_4000_reverse	8	11	3	8	13	8	12	9	12	11
TCTAGAACACAACGGA	alt_4000_reverse	4	16	12	11	22	7	26	14	14	6
GTGCTAAAGTCCTTTC	alt_4000_reverse	16	30	26	20	27	34	32	38	31	23
GCTACTGTAATTAATT	alt_4000_reverse	48	50	52	33	58	32	37	41	50	28
CCCCATAGGGAGCATT	alt_4000_reverse	25	38	40	25	34	24	34	19	31	24
CAACCTGAAAACCGGA	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGTACATTACAAA	alt_4000_reverse	50	45	50	52	42	33	70	38	48	34
TAGTCTTGTATACATG	alt_4000_reverse	1	1	0	1	1	0	2	0	0	0
TCTCATCCACCCGGCG	alt_4000_reverse	42	67	50	58	73	45	73	56	68	45
AAATTACACCGCGCCG	alt_4000_reverse	34	26	15	19	26	36	28	17	35	17
GTTGGAAACTGGTCCA	alt_4000_reverse	21	20	18	12	31	21	29	21	25	25
AGGGCCATTCAGAATA	alt_4000_reverse	0	11	5	3	4	3	19	6	3	1
GAGCAGTAGCCGTCAT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAGCACCGCTGCA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TAAAAATCTGCCTATC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCTTTGACACCAT	alt_4000_reverse	63	87	79	58	117	66	116	62	118	49
ACCCCGAACGCATACG	alt_4000_reverse	21	21	13	15	25	10	34	16	17	15
CCGTTAGGACGTCCTA	alt_4000_reverse	31	49	36	24	34	30	26	17	63	24
GCAATTGTAAGCCATT	alt_4000_reverse	26	24	31	23	21	16	50	32	32	18
ACGTACTCTCTTACGG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCCATCCTGACTT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GTATGCGGCAACTTTA	alt_4000_reverse	9	25	35	16	20	15	25	9	21	12
CTTCTTGGCTTCACTA	alt_4000_reverse	5	7	13	9	11	4	11	6	12	14
CATGTCGGTTTGCGAG	alt_4000_reverse	38	68	62	55	67	43	80	55	68	42
GACGTTTGTTTCGTAG	alt_4000_reverse	48	72	46	42	73	33	77	34	74	32
AAGCTTGACGCTCTCG	alt_4000_reverse	6	6	7	7	4	2	6	1	8	3
ATATTCTTCTGGTGGA	alt_4000_reverse	10	13	10	2	6	3	16	6	19	9
GTGTCGGAGAAGCCTA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGATAATACCTGA	alt_4000_reverse	7	20	17	11	14	11	20	7	25	19
TTTAAATCGCATGGAT	alt_4000_reverse	23	45	32	23	32	28	30	25	53	22
CAGTATACTATTCGCT	alt_4000_reverse	38	53	48	41	57	40	69	34	60	38
TGAATACAGATAGCTG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTGTATGGTATCC	alt_4000_reverse	47	76	59	51	72	41	63	40	72	30
TCTCCCCCTGAACTGG	alt_4000_reverse	8	16	19	11	17	8	17	6	28	10
GTATTTCTCAACTTTA	alt_4000_reverse	52	93	71	41	71	32	57	56	59	43
TGCTTTTCCCTGTTCG	alt_4000_reverse	60	86	69	60	70	66	96	46	109	34
GGCATTTGCGCGTGCC	alt_4000_reverse	11	11	14	18	16	10	23	20	20	18
TTATTCATAAACCTGT	alt_4000_reverse	7	1	6	7	7	7	6	6	13	8
AGAAGTTCAGGTAAAG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
AACTTTTTAGGTTAAA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGCTTGTGGATTG	alt_4000_reverse	27	49	33	21	35	36	52	24	59	30
TAGCATAATATACCTT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CTATTCCCCTTGAATC	alt_4000_reverse	75	86	92	54	98	56	115	55	117	50
GACCATCCCGGTGACT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTCAGCTCCACCA	ref_4000_reverse	21	28	27	15	37	23	39	16	49	16
TATTGATCCGGATCAG	alt_4000_reverse	1	9	8	2	2	6	8	3	9	10
CGCCACGACTGCGCGC	alt_4000_reverse	3	14	6	1	18	5	23	4	14	4
GCCCGACCCACTTTCA	alt_4000_reverse	5	8	10	5	5	1	8	8	15	5
TGTCCGGTCGAGAGCG	alt_4000_reverse	14	28	17	15	35	6	32	13	24	17
CGTTTCGACAAATCCC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
ATGAATTTATAGCGGT	alt_4000_reverse	25	36	23	20	29	18	28	16	29	8
TCACCGATGTTCTCGA	alt_4000_reverse	18	44	28	21	49	18	48	16	60	18
GTTAGTCCAGATGACT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTATGTATGTCTA	alt_4000_reverse	25	37	30	19	49	22	41	15	47	25
GTACACCTGTATGAGT	alt_4000_reverse	2	7	7	3	5	2	4	3	4	2
TTCCTCATGTTCGAAT	alt_4000_reverse	5	4	8	7	7	5	4	6	11	8
CGGATTTCTTGATCTG	alt_4000_reverse	58	54	63	52	56	50	54	43	77	53
CTAGGCTTCCGCGGCG	alt_4000_reverse	7	10	4	7	7	11	12	9	3	10
ATGTCCAACCCTGTCT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGTTCGTTCCGGA	alt_4000_reverse	15	11	18	16	21	11	19	12	24	6
GGATACACCGATCCAA	alt_4000_reverse	38	48	44	35	62	22	41	38	40	37
TTTGGGCAAGAGTCGC	alt_4000_reverse	14	41	26	29	23	31	48	28	44	14
TCAGAGTCCTATCCGT	alt_4000_reverse	4	12	9	2	10	1	20	4	9	4
GAGATAACGCTAATTC	alt_4000_reverse	40	50	66	48	63	46	61	52	57	39
CCCCACTCAAAAGCTA	alt_4000_reverse	22	34	14	12	32	27	31	21	38	22
CAAACGACTATTTGGG	alt_4000_reverse	60	88	60	49	71	48	87	47	72	47
ACATGTGTCACCTCGG	alt_4000_reverse	4	9	2	4	7	5	8	3	10	6
TAACGTTTCGTTCCCA	alt_4000_reverse	7	18	14	10	24	5	26	7	9	15
GATCGGGATGGATCGT	alt_4000_reverse	46	58	57	35	74	39	85	43	55	36
GATCGGAGAACATCTT	alt_4000_reverse	63	80	83	59	65	72	68	61	80	74
TCTTAGGACTGTAATA	alt_4000_reverse	27	43	40	15	47	27	38	39	54	39
CCACCACTTCCCGGTT	alt_4000_reverse	8	20	12	6	17	5	10	6	12	7
AAAGTGATTTAAGTTG	alt_4000_reverse	54	51	60	55	60	65	68	51	80	37
AAGTTAATTGCGACTG	alt_4000_reverse	14	27	17	22	26	13	42	24	30	24
TCATAATCGAGACGCT	alt_4000_reverse	21	22	18	18	22	16	29	17	27	17
CAATCCTTGACTCCGG	alt_4000_reverse	0	1	1	1	0	0	1	0	0	0
GTGTTAGTGTAGAGTA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAACCATAGGCTG	alt_4000_reverse	22	33	32	15	42	22	40	21	37	21
ATGACGCCTCTCTGCG	alt_4000_reverse	5	10	5	5	14	9	11	4	8	6
GTGTAGTCCTTTTATA	alt_4000_reverse	8	8	12	14	17	7	18	7	26	5
CTCGACGCTAATATGA	alt_4000_reverse	61	92	72	58	85	37	114	41	110	60
ACTTTGTCTACATAGT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCTTCAGCTTTTA	alt_4000_reverse	4	7	7	4	5	12	7	10	9	5
CAGGTAGCGCAACTCA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCCAGGGTTCGTG	alt_4000_reverse	39	55	37	32	63	33	57	31	74	40
GAACTGTGTTGATTGT	alt_4000_reverse	2	11	13	7	7	6	10	3	5	13
ACTCTCAGCTCTATGG	alt_4000_reverse	3	6	15	12	6	5	5	5	9	5
CTTGGCTCGGGCTGTC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTAGCTCAACGTT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTGTAAGGTATTG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGCAGAAGGATAA	alt_4000_reverse	1	8	6	5	1	4	4	2	4	2
AACACTGTGCTTGGTT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CCCGAGAGGTCTCACT	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
TCTACTGTTTAGCCTG	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTCTTTTTCCGGG	alt_4000_reverse	22	23	35	14	26	25	33	30	45	18
TGCGACACATCCTATT	ref_4000_reverse	21	25	33	17	25	21	18	15	27	16
CGGACGGACGGCATGG	alt_4000_reverse	7	17	13	11	14	13	9	12	11	7
GGTCAAGCCCGTATTC	alt_4000_reverse	65	114	80	64	102	74	107	64	97	73
ACCTATACTACGAGCC	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CATATGGTAATTTTTT	ref_4000_reverse	11	12	9	15	11	11	7	14	19	5
AAGTTTGTTAGTATAT	alt_4000_reverse	72	94	93	75	99	62	130	58	106	46
ACTCTCGATAGTTGTA	alt_4000_reverse	6	5	7	4	14	6	8	3	5	4
ACTTCAATAGACTTGA	alt_4000_reverse	0	3	4	1	1	1	1	1	0	0
AAGGTATCTGCTTCTA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
ATACGATCTCTCTGTA	alt_4000_reverse	17	18	9	8	22	7	19	20	24	5
CAGAACGGCTTCTGAA	alt_4000_reverse	0	0	0	0	0	0	0	0	0	0
CTAATTTAAGGTCATT	alt_4000_reverse	8	5	9	7	6	8	5	13	9	2
AACTTGGGACGCCTTT	alt_2950_fdr	10	8	14	12	11	15	15	7	6	7
TTTCGGTACCGAGCCT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGTGCGAAGAGCG	alt_2950_fdr	305	266	322	334	285	320	300	262	291	309
ATTCTAAGTATATAGT	alt_2950_fdr	8	4	3	5	5	6	10	13	8	6
CACTGTCTATGTTTAG	alt_2950_fdr	5	9	4	13	5	9	4	5	9	3
ATGGCGATGTCTGGGT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCCAATTCCTACG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGTACGATATTTG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGGTTAGGGACTA	alt_2950_fdr	20	11	17	18	19	17	11	9	31	13
ACCTAGTCAAGAAGCA	alt_2950_fdr	34	31	43	35	21	35	22	24	19	36
TCCTAACCCTTCCATT	alt_2950_fdr	17	20	24	13	18	19	21	17	20	13
TGTTCCAAGCCGCGTT	alt_2950_fdr	20	8	21	18	11	12	10	19	10	12
AGCACATCACTGACCC	alt_2950_fdr	27	18	29	20	12	28	23	29	29	25
GTCGCAGGATGTACAG	alt_2950_fdr	44	50	60	60	43	41	53	46	52	48
TTCTGGCGTATTCCCC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTCCACTTCCGCTACT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCAATGGGATCA	alt_2950_fdr	28	26	30	33	20	30	19	16	25	28
TAGTCAGTCACGTTGC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTGCCCTAGTCG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TACACCCCGACACTGT	alt_2950_fdr	1	0	3	0	1	0	0	2	1	0
TCTAATATCGGTCATA	alt_2950_fdr	39	28	26	25	36	27	19	42	19	22
TGTACCCCAGTCGGGG	alt_2950_fdr	4	7	2	2	3	3	4	4	2	2
CCAGCGCCTAAAAAAG	alt_2950_fdr	6	17	3	12	8	5	14	8	18	5
GCCATTTTAGGGACAT	alt_2950_fdr	49	34	63	47	34	54	21	38	33	48
CGGGCGGTATTTTCCA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CACTGACGAGTTTTGC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCAGCTTCTTCTT	alt_2950_fdr	30	40	41	24	31	35	42	31	33	35
GGCACGGTATTGATCA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TTACATTTAGTAAGTC	alt_2950_fdr	59	58	38	58	48	56	54	46	81	51
TCCACACGCCACCTGA	alt_2950_fdr	28	61	64	44	56	57	75	34	45	38
ACAAGCTACTTTGCTA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TAATATATCATACAAA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TATGATGCCTGCTGAC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
AAAAGTCGTCCTATTG	alt_2950_fdr	15	16	8	21	26	11	16	10	21	13
GTAGGCAAGTGTTGCT	alt_2950_fdr	23	20	27	21	17	14	26	24	16	18
CACGTCGGCCAAGTGA	alt_2950_fdr	27	18	27	23	18	23	12	11	11	14
CACCTACTGTTCACAA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGACTCGCATTTG	alt_2950_fdr	53	65	60	48	46	44	62	49	68	63
CATGTGGCACTGGAAA	alt_2950_fdr	19	25	30	19	17	21	23	14	20	27
GTTGTTACCATTAGCA	alt_2950_fdr	34	31	40	34	30	38	31	26	41	24
AGCGCTTTAATTATGG	alt_2950_fdr	20	17	16	14	17	14	19	10	20	22
TGGGGGACGGGTGAGG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTACGGAGCAACA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
AAATTCGTGGATGCGA	alt_2950_fdr	16	18	17	15	13	9	11	16	10	10
GCCATCAGTCGTACCC	alt_2950_fdr	63	72	105	83	103	71	94	81	75	60
ATGTCGAGATAAATAC	alt_2950_fdr	14	6	6	13	5	7	9	3	8	9
CAGGAACCAATCATGC	alt_2950_fdr	26	19	20	26	25	31	27	21	31	9
TAAACGTGTAGTGAGC	alt_2950_fdr	39	33	40	24	32	39	37	22	41	28
TCCTACATTTGGGAGA	alt_2950_fdr	37	37	42	41	29	33	33	33	29	30
CACGAGCGTAATGGAT	alt_2950_fdr	4	3	4	1	3	3	2	3	2	2
GTTGCCCTCCTCCCTT	alt_2950_fdr	20	18	15	18	21	20	18	25	18	14
ACTCGAATCGCCAAGA	alt_2950_fdr	12	14	17	18	10	11	8	15	5	14
ATATGGTCTCTTGCGA	alt_2950_fdr	2	3	2	8	4	1	2	1	4	1
TCTTTTAAGACCTTGG	alt_2950_fdr	11	15	19	12	17	12	18	10	15	13
TTTGTTTCTGTGGACC	alt_2950_fdr	40	35	37	41	33	32	45	34	43	28
GTGGTCCAGGGGTACT	alt_2950_fdr	77	77	123	90	68	80	74	69	78	65
CATGGGATATGGCAGC	alt_2950_fdr	34	14	41	39	20	23	24	24	21	42
CCATGTCGCTAACACC	alt_2950_fdr	41	44	53	42	40	39	45	50	43	21
CTACAAGATAGTAGGT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCCTCCCACTCC	alt_2950_fdr	132	90	115	116	100	92	103	101	110	98
GCTGGTATTTAGTTTC	alt_2950_fdr	211	183	271	228	197	184	219	192	193	185
CCACTTACCGCGCTCC	alt_2950_fdr	6	7	0	8	7	2	11	3	8	1
TCGAGGTGATACCCTG	alt_2950_fdr	1	0	1	1	0	0	2	1	0	1
CTTTAATACTTGATTG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CATTTTCAGCTGCATT	alt_2950_fdr	14	13	23	6	12	17	5	15	10	9
ACTTAGCCGAGCGTCT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CGCACCTTTGAATGTC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTCACCCGCTGA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGCTTTTGTGGA	alt_2950_fdr	20	18	17	18	24	21	13	18	17	12
ATCAATTCCGGCGGGG	alt_2950_fdr	13	5	10	16	8	12	10	11	14	17
GTTTACTGGTTCGGTT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CGGAAAAAAGTATGAT	alt_2950_fdr	19	16	41	30	29	31	16	29	17	26
AACGCCTAAATAAGTA	alt_2950_fdr	33	45	65	43	52	34	54	42	68	37
GGATGTTAGTTTTGAA	alt_2950_fdr	0	1	0	1	0	0	0	0	0	0
ATATTACTCATCTGTT	alt_2950_fdr	34	41	53	43	32	30	39	47	52	41
ACCATACATTGATTCA	alt_2950_fdr	101	99	105	96	93	80	88	81	87	75
TTTGGGTTCATGGACA	alt_2950_fdr	49	30	61	42	22	47	55	28	42	41
TTAGTTCTTATGTTAT	alt_2950_fdr	12	7	20	16	14	14	16	12	14	12
ATTCATGGCTTGATGT	alt_2950_fdr	5	4	9	14	11	5	9	3	5	6
GCGTATTAATTCTCTT	alt_2950_fdr	51	38	48	48	43	39	46	43	54	31
GATGAATAACGACGGA	alt_2950_fdr	31	36	58	41	27	38	26	24	27	27
GCCTCAGACTGTTTTT	alt_2950_fdr	28	22	19	20	27	17	36	19	34	24
TTTCTTCAATCTTTCT	alt_2950_fdr	67	69	67	66	53	67	63	83	63	71
AAATGTACCCCGCTAC	alt_2950_fdr	8	14	13	10	14	10	7	8	5	6
TTTATTTCGAGTTGTC	alt_2950_fdr	2	4	6	3	0	4	4	1	1	8
AGTCAATTTTCTGAGC	alt_2950_fdr	10	14	21	16	10	15	19	16	18	18
TCGTTGTTATTCAGTT	alt_2950_fdr	44	39	51	34	43	39	52	35	41	33
AGTTTGCCTTGGGATA	alt_2950_fdr	30	30	54	32	41	45	32	40	38	26
ACAAGTACAGGAAACT	alt_2950_fdr	28	25	40	33	22	39	28	37	38	29
CCTTGTTCTTTGTTTC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CAATTTACAGTTTACA	alt_2950_fdr	41	32	47	47	28	40	37	28	43	36
CATAGTTTTGTTTCCA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CAAATCTGCCGTGCGA	alt_2950_fdr	26	22	33	43	21	23	28	34	26	30
TTTCGAGGCTTCTACG	alt_2950_fdr	13	13	17	10	7	18	12	17	15	15
TGTTTACAACGTCAGG	alt_2950_fdr	9	12	10	9	10	7	12	5	9	10
GTTGTGTTTACACGGA	alt_2950_fdr	22	17	20	28	19	15	25	19	14	25
GCAAGATCCAATTTAT	alt_2950_fdr	98	94	123	120	94	107	111	116	90	86
TTCGGTTTCTGCCCAT	alt_2950_fdr	32	33	46	50	47	34	40	35	38	31
CTATCCGATTGTCCAG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
ACAATCGGATAGTGCT	alt_2950_fdr	14	8	17	10	24	9	9	8	13	7
CATCAATGTAAATAGA	alt_2950_fdr	41	44	39	45	45	39	38	38	52	35
GGCATACCTTGTTATA	alt_2950_fdr	14	11	17	9	17	7	18	10	12	14
CAATTAAATCTACAGG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TACTAAGGGGCCCGAA	alt_2950_fdr	81	85	118	101	92	98	74	87	93	82
GCGGTCATTGTATCGC	alt_2950_fdr	9	12	13	15	9	15	9	8	14	19
TGCAAGCTAGTTCTTG	alt_2950_fdr	6	3	3	4	5	2	6	8	2	2
TAGTTTTTGCCTCATA	alt_2950_fdr	7	2	6	1	3	4	3	3	2	7
ATTTACGTGCCTTTCT	alt_2950_fdr	100	72	103	95	92	84	99	109	83	74
TGGTTGCCAATGGTCG	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTTAATCGTCAGT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
CTCATTCCATTAGTGT	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TAATGATTGACAGTAT	alt_2950_fdr	42	38	47	48	53	54	41	52	39	50
CGCTCACACGCGGATC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
ATAGAGCGAAAAGGAT	alt_2950_fdr	38	37	68	42	32	40	45	33	34	40
GTCAGTTCTCTGATAT	alt_2950_fdr	4	5	7	2	3	10	16	3	12	5
GTCATATTCGCTCAAC	alt_2950_fdr	237	201	302	253	215	221	243	241	223	179
TGAAGTAGTATGTTTA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
TATAGCGAGATACTTT	alt_2950_fdr	11	7	10	12	7	12	7	11	16	12
ACTATTGACGTGCGCC	alt_2950_fdr	99	91	103	92	69	91	70	70	102	83
AGAGGTGAGAATATAG	alt_2950_fdr	29	20	26	25	27	22	22	28	30	16
GGTCTTCTTGTATCAG	alt_2950_fdr	22	27	38	20	32	33	34	22	24	10
ACTGGTGTCCTAACGT	alt_2950_fdr	24	38	32	24	25	18	33	28	30	19
TGAGTCTTAGAACAAT	alt_2950_fdr	41	35	48	40	32	40	45	46	49	44
TTACTGTCCACTCACC	alt_2950_fdr	5	7	3	1	5	2	6	2	9	3
TACTATTGATTTAACC	alt_2950_fdr	47	44	69	51	44	36	36	38	53	38
ACTACGCTTGGCGCCC	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
GCATACGGAGTACTCA	alt_2950_fdr	23	27	36	37	23	19	24	15	39	30
TGTACCGTGTTGTCTT	alt_2950_fdr	4	2	5	11	8	9	1	7	1	1
TCATGGTTTATTAAGT	alt_2950_fdr	12	17	30	20	23	18	29	17	16	21
CCGTGATTTTATTTGA	alt_2950_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCATCTAAATAGA	alt_2950_fdr	101	77	120	94	81	74	71	94	85	62
AACATTCTAAGTCATT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAGTTTGAGCTAA	alt_3416_fdr	15	17	12	12	22	3	16	7	12	15
GACACTTCTCGCTTGC	alt_3416_fdr	3	1	1	4	4	0	4	0	7	1
TTTGCCGTATTCGGCT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CGGTATCCCTGGCTCC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCCATAGATCTTT	ref_3416_fdr	32	28	33	34	22	25	36	22	26	30
GTTTGTGTTAGTTTCT	alt_3416_fdr	21	23	13	27	22	20	23	15	43	15
TGTGTTCTCTTGTTAT	alt_3416_fdr	26	23	20	16	19	14	18	15	12	6
CACACTTTCTCCCTGG	alt_3416_fdr	22	48	29	20	38	14	48	13	50	27
CATTAATCAAGGACGT	alt_3416_fdr	0	0	1	0	1	2	1	1	0	1
CATGGCCCGCCAGTTT	alt_3416_fdr	123	109	151	124	127	105	131	107	148	101
GTGCCGCTCTAGTGTA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAATGTGCACATT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CAGCAAATAACGAGTT	alt_3416_fdr	25	19	17	13	19	20	26	12	19	14
CGTCTCCGAACCATAG	alt_3416_fdr	20	29	23	28	51	39	46	32	32	15
TAAAGAGCGATCCCCC	alt_3416_fdr	13	12	25	19	17	15	6	34	26	16
CCTCCTCCCTGTTTAA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTTTACTCCGTAT	alt_3416_fdr	15	6	19	13	13	14	19	17	11	9
TTTCACCCTCTGTTCT	alt_3416_fdr	89	93	101	115	99	78	95	85	104	79
TGCTCAGAGGTGGACA	alt_3416_fdr	10	6	7	8	12	8	8	10	7	9
CAGATATACCTTTTAG	alt_3416_fdr	24	20	36	12	13	16	18	17	26	19
ATGGAGGTGTGGTTGA	alt_3416_fdr	5	5	6	4	3	6	9	2	8	4
GGAGAGTAGCTTCCCC	alt_3416_fdr	32	37	52	38	42	37	33	26	48	26
ACACGGCGTTTTCGGA	alt_3416_fdr	64	64	56	59	45	40	87	45	89	62
TATCTGTGGGGACTTA	alt_3416_fdr	27	28	30	40	29	16	33	23	29	13
GCTTGACTGTCTGCTA	alt_3416_fdr	10	6	9	8	11	7	8	5	7	8
TATACAGGCGTTTTGC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GTATGAATATTGGTAT	ref_3416_fdr	14	15	12	8	10	7	7	10	13	4
CGAGTACTTAGTGCGT	alt_3416_fdr	30	29	25	41	41	34	33	27	50	47
GTTATATAAGTTTGTT	alt_3416_fdr	7	12	11	11	10	6	10	5	7	9
ATAGGTGCTTTAAGTT	alt_3416_fdr	35	50	45	43	53	39	27	45	51	47
GCTTCAAATATGCCTA	alt_3416_fdr	14	25	18	20	26	8	18	13	23	20
TAAAGTTCTGTAGATA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CAATATAAGTCGTTAA	alt_3416_fdr	6	10	2	4	6	4	8	9	13	12
TAGCCCGGGACGTGGC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTCCTCTGCCTTT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CCCAATCTTCGGCCAG	alt_3416_fdr	13	23	22	18	24	23	26	12	31	6
ACCGCCCGATAAACGG	alt_3416_fdr	79	55	59	34	86	63	67	41	96	41
TTTGTCTCTCCTGTCA	alt_3416_fdr	9	3	8	4	1	1	7	0	5	10
GGATTAATACTGATTT	alt_3416_fdr	37	33	29	42	19	27	20	22	28	21
CAGCTACCCCATCAAG	alt_3416_fdr	6	19	12	14	28	17	16	21	24	12
CTTTGACCTGTCCGTT	alt_3416_fdr	23	27	21	9	23	18	21	10	23	28
CTTCTATAGTATGGCC	alt_3416_fdr	94	58	90	83	78	78	103	88	86	73
GAGCCTCGTTAAGATC	alt_3416_fdr	59	45	59	57	39	42	64	44	60	49
TGATGTGATGGACACG	alt_3416_fdr	50	52	59	56	56	32	64	55	56	49
GCAAATGTTTTTAAGT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCTGGTTCCTGGC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTAGAGGGATTTT	alt_3416_fdr	211	235	252	203	224	212	249	182	232	157
TAGACCGCTGGTTTCT	alt_3416_fdr	15	29	23	23	19	18	16	16	31	17
TAAAGTTGTTTCGAGC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTCACCTAAGGAACAC	alt_3416_fdr	8	6	11	10	7	9	4	8	11	5
CCCTGCATGCACACAC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CCATGGTAGTATGGCT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ACAGAGATGTTACCAA	alt_3416_fdr	33	66	48	53	47	42	40	64	39	43
TCCAAACGACCCCGGG	alt_3416_fdr	80	57	92	54	63	69	55	81	69	59
CTCGCGGGGATACGCT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TACTTCTCCGCGTTTA	ref_3416_fdr	30	51	41	33	59	37	47	34	71	22
ACCCATAGATATGACA	alt_3416_fdr	9	6	4	7	9	6	6	4	4	6
CACGTATATTCTAACT	alt_3416_fdr	94	79	106	92	105	100	95	97	90	64
TTGCAATTGATTTCAC	alt_3416_fdr	7	9	14	3	8	10	7	8	11	5
CGGTGGGTTGATGCCG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
AACTTTCTAAGTCATT	alt_3416_fdr	99	101	123	82	114	106	92	99	126	84
GGATACATGCGATGCT	alt_3416_fdr	13	25	18	21	26	18	20	17	18	25
TAGACCGGGACGTGGC	ref_3416_fdr	123	152	150	131	161	113	133	115	146	119
TCTCGCGCGGTCCTGC	alt_3416_fdr	10	8	11	9	11	11	4	8	16	2
CGGAGGATACGCTTTT	alt_3416_fdr	1	5	6	2	1	4	5	3	0	7
TGAGACTCAGCGGTCG	alt_3416_fdr	44	42	34	42	24	46	25	31	41	29
ACCGTTTTCCAAAAGT	alt_3416_fdr	19	24	23	10	24	9	17	10	23	16
AAGGCGATGTTTATTG	alt_3416_fdr	23	49	53	46	35	39	33	37	31	26
CGGGTTCTTAATTTTT	alt_3416_fdr	13	10	15	14	12	14	8	11	8	18
AAAGTTCATAACTTAT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CAGAGAAGAGCCACGT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGAGACGCGCGGGTTT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GGGATAGTTTAACGGT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGAGCAATCGGAC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CACAATGTTTTCAGGG	alt_3416_fdr	28	25	33	31	41	28	27	17	33	35
CTACGCGAACTGTTCA	alt_3416_fdr	36	42	39	48	52	35	50	49	44	58
ATGTTTGTCTCAACTA	alt_3416_fdr	25	30	37	23	41	16	39	26	28	32
TTATTTGTGGGTCATC	alt_3416_fdr	12	19	20	14	18	16	16	25	17	21
AAATTAAATTTTGGTA	alt_3416_fdr	14	7	15	6	15	9	7	12	6	11
CTATAAGTTTGGCAGC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GTCAAACGTGGTACCC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTGGTTTTTCGGT	alt_3416_fdr	9	12	16	12	14	9	10	11	13	7
TCTCGGTTTACGGAAT	alt_3416_fdr	26	24	20	17	10	20	24	17	25	32
TGGGGCTGCTTGCCCA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
AATCTCGAGGTTTCGG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ACACTTGCTTGCGGAA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCAATCAAAGAAG	alt_3416_fdr	19	22	19	19	19	15	30	9	18	19
CGTCCATTTGAGGTGT	alt_3416_fdr	9	13	18	15	22	17	16	16	10	17
GCCTGGTTGTTGTGAT	alt_3416_fdr	18	37	15	16	14	15	12	14	25	11
AAGAGTCGCAGCCCCT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTCCTGGGTAGGG	alt_3416_fdr	113	104	157	119	115	127	131	133	129	106
CACAACCTTCTGCCGC	alt_3416_fdr	34	24	19	24	30	17	26	18	29	29
GGCAGGTGGCCAGGTT	alt_3416_fdr	0	1	1	3	1	2	2	1	3	0
ATGGGCTACGCTTTAG	alt_3416_fdr	16	19	15	16	18	18	9	17	18	14
ATCCCGGAATTCGTGT	alt_3416_fdr	61	51	54	62	59	49	64	48	47	58
CGCCAGTGGCGTAACA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTGCGACAGATTT	alt_3416_fdr	2	0	1	1	2	4	3	2	1	0
TATTGATCCGGGACTT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTTGCCTGTTTGA	alt_3416_fdr	46	38	43	39	28	29	37	31	43	33
ATTAGTACCTGGGCTG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCACCCCCGATTC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ATCCATATTGAGGTAT	alt_3416_fdr	251	256	304	256	265	199	280	222	275	203
AAGCTGCAACTAAGTC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGCGCGGCCTAT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ATCATTTAAAGGTCAC	alt_3416_fdr	35	45	53	39	50	38	49	49	46	33
GCTGACACGGGCGTTT	alt_3416_fdr	47	33	52	44	46	42	44	37	51	41
ACATATTCGTGGCTTT	alt_3416_fdr	35	27	37	27	33	24	41	26	19	30
TCGGGACATTAGACTC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CATCCTTTCGATCTTA	alt_3416_fdr	5	4	5	1	7	4	1	7	3	5
GTCGTGGGCGCGTTAC	alt_3416_fdr	13	11	16	4	7	6	8	6	8	10
CGCCACTTGTTATTGG	alt_3416_fdr	6	1	5	3	3	5	5	4	5	6
CCTTGTACTGGCAGGG	alt_3416_fdr	7	7	5	4	9	7	11	3	8	8
CCAGCGGTCTAGTGCA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ACGCGGTCTCCAGCGC	alt_3416_fdr	35	35	45	38	24	38	37	36	35	28
TAAGCTATTTAAATGT	alt_3416_fdr	15	11	24	25	17	17	11	17	30	16
CATAACAAGGGGAGTC	alt_3416_fdr	12	17	15	24	17	18	16	13	19	17
CAACAAGGTAGACAGA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGCCTGGGGAATT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCACGCACTGGAG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTACTCTGGTGCG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
ACCCAGCTTCGTCACT	alt_3416_fdr	18	18	25	18	22	13	27	10	19	20
GGTACAGTTCGTGTAC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGTGATGGTCTAT	alt_3416_fdr	20	14	25	18	26	26	19	28	16	14
TGCTTACAAGATTGTG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GTGAATGGCTTGCCCG	alt_3416_fdr	4	2	2	1	0	6	5	0	3	2
CCGACCGGCCGTTTAA	alt_3416_fdr	16	26	32	20	27	24	30	22	32	19
GCTGACAGCCGGCCTA	alt_3416_fdr	5	6	5	1	3	8	9	3	5	1
CAGACTCGCGCAATGG	alt_3416_fdr	2	2	4	4	1	0	3	2	0	6
CGGCTTCCGGTTGTTA	alt_3416_fdr	86	63	91	73	54	53	66	61	56	64
TCTGCCTGTATATGCT	alt_3416_fdr	10	16	21	14	24	15	19	13	21	17
GGTCATCCCTAATAGA	alt_3416_fdr	67	51	79	79	71	65	58	62	49	59
ATTATAAGACTAGACG	alt_3416_fdr	14	11	12	13	17	12	20	13	27	15
AAAATATCCGTCACTT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGCAACGGAACA	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TAGTAGCTTGGACATC	alt_3416_fdr	55	47	47	49	66	26	59	42	40	28
GTCACCTCTCGGGTCC	alt_3416_fdr	19	24	19	32	25	16	28	13	29	18
TATGTTTCCTAGGTTT	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTTATGCATGCCC	alt_3416_fdr	22	35	42	35	33	39	46	30	35	32
AAGGATTTTAGACCAG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
AAGGCGTAAATCTGCA	alt_3416_fdr	13	6	12	6	9	2	8	8	15	8
TCAAGGTGGACTAGCG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CGCGCATTCTTTTAAC	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
GACTTGCCGTCTCGCG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CCGTAGCATCTAGTTA	alt_3416_fdr	76	76	84	73	82	78	105	90	112	53
TATAGGTACCGAGGTG	alt_3416_fdr	0	0	0	0	0	0	0	0	0	0
CATCTCATATACCTGG	ref_5649_new	18	29	13	13	22	17	38	15	35	15
ATATTTGACGTTAAAC	ref_5649_new	3	17	17	5	27	15	20	22	20	17
CTAGGAAATGTGCAGC	ref_5649_new	11	12	15	8	11	7	13	7	16	14
GTGGGTGTGCTTGAAA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
CTGAATTCGTGGTCCG	ref_5649_new	2	2	0	4	5	2	1	0	0	5
GGATGACGGATGGGTG	ref_5649_new	12	14	7	14	19	7	15	8	12	11
CAAAACAACCTGGTGG	ref_5649_new	25	27	30	27	41	16	34	25	47	25
TTGTAGTGGGTGTGCG	ref_5649_new	28	58	22	25	56	38	52	32	70	27
CAGGCATTGATTTTAC	ref_5649_new	21	25	30	31	31	19	24	22	39	16
TAATTAAACAGGTAGC	ref_5649_new	0	0	0	0	0	0	0	0	0	0
CTATTTCACGCACGTA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
TTAACGGATAAAACCA	ref_5649_new	5	13	14	9	14	7	15	10	12	9
GGGGAATGATCGCTGC	ref_5649_new	92	128	111	76	139	88	148	73	153	60
GATGTACTGTTGGTTG	ref_5649_new	13	30	20	16	37	13	35	14	28	12
GTCATTGTGCTAAGAA	ref_5649_new	52	81	47	60	83	40	76	58	77	47
GCTATCAAATCTTAAA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
AGTAGCTTTTTTCAAC	ref_5649_new	17	25	24	19	32	8	21	17	20	27
CTTCCCCGAACTGAGA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
ATGAGATCTAGCCCCT	ref_5649_new	0	0	0	0	0	0	0	0	0	0
CTTTTAGTATGTTGCT	ref_5649_new	31	52	32	34	64	38	63	26	76	23
CAGCGAGGCCTCAAAC	ref_5649_new	10	28	16	10	27	7	29	6	28	10
CTGGCCCCTGCCGGGT	ref_5649_new	0	0	0	0	0	0	0	0	0	0
AGGGGTGCGTCTGCGG	ref_5649_new	0	0	0	0	0	0	0	0	0	0
TTTAAGTGTATTTTAT	ref_5649_new	23	37	29	19	33	22	36	19	33	21
TTTTGTGCACATTGCA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
GCGGGGTGAGACAATT	ref_5649_new	14	14	19	14	16	11	15	16	15	11
TATCGCGTCAATTTTT	ref_5649_new	19	24	16	22	19	20	24	22	21	10
ACATGTTACTACAAGC	ref_5649_new	0	0	0	0	0	0	0	0	0	0
GCCCTACGCCCTTATG	ref_5649_new	4	14	4	7	14	1	11	5	15	3
CTCGCGGCATGTTTAT	ref_5649_new	0	0	0	0	0	0	0	0	0	0
TTAACGTAGTAATTTC	ref_5649_new	25	17	29	14	27	15	21	11	18	12
CATCTGCAAGCGTTTA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
CTCCGTTGTCATTTTA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
ATTCTGCTTACGTGTG	ref_5649_new	37	55	35	29	87	29	59	30	90	35
GCAGTTTGCATCCCCA	ref_5649_new	0	0	0	0	0	0	0	0	0	0
GAAGGATGTTCTTATT	ref_5649_new	98	135	134	108	140	102	159	89	193	91
ACGACGTGTTCTATAT	ref_5649_new	23	38	34	9	42	20	29	21	44	16
CCTTATTGCCAGGTTT	ref_5649_new	5	13	7	11	13	6	19	11	15	6
CAATTTTGACCGGAAC	ref_5649_new	0	0	0	0	0	0	0	0	0	0
CCAACTGTCAAATTTG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGCTAGGTCTTTTTTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GCCAAAAAGGACTAAT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TCGTATTGTTGATTTG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ATCTAACAGATAACTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTTAGCAAAGTGATTC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCGACGAGGAAT	alt_3685_RC	5	17	13	10	13	5	9	8	8	3
ATTTCGCCTCGTTTTC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CCCTGTTCTCCATAAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TAAACCTATCTACTAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TCTCCGCCGTCCCAAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
AGTCCCCACGAGACGT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TCGCGAAAGCGCTCGT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CGCGCGGCTTGTCTTC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGTGTTTATTACAATA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTACACCAACGA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ATCTACGCCTTTACCG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CTAGGTGGTTCGGGTC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TGTTTAAGAGAGACGG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
AACTCAACTTATTTTT	alt_3685_RC	4	5	0	1	2	1	5	2	2	1
CACCGGGCTCTCAACA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CCTTCGGCCCTGAACT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
AGATAGTACCGGAAAC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGTATCGGAACTCTTC	alt_3685_RC	6	15	5	6	9	7	18	6	14	5
ATGGTTTTCTCGTTTG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ACGGTGGGCTAAGATT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GCAACTCATGCTGACA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TTTGGTGGAGCGTTAA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TATCTAAGAAAGTACG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GCTGATTGATAATGGG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTCTTTATGATTATCG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CTCAGGACCTTGCTAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ACTCCAAGGGTGCCGC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CATCGGGGCACATCCA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CGCCCCAGTAATTAGG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGTGACCGTAACAAGC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ATATACCATCGTGCTC	alt_3685_RC	3	8	11	8	13	4	5	4	9	3
TTGGGCTACATGTCTG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGAGTTCTTGGTCGAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTACTCCTATTTGGTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TGATCATGAATCACGT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TTTCCGGCCCTGCTTA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TATCTTGGCTAACTTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CGTTTAGCGTATAGTG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CCCTAAGTTGCCTGGG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CGGGGTAACGGTTATC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
AGATAGCTATGTACAA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GCTCACGGCATCTAAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
AGGCAAGGCGTCTGAT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ATGTGTTCCCCGACGT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TGCAATGAAATTAACT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TAGGAGTTTAGTAGTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TCTTGGCTTATGTGCT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CACGCATAATTCACAT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ATCGGAGGGAGGGAAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CTGTATGCTGACTTCA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TCCCGGTAGTCCCGAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTGAATCTCATTCTTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTTTGTTTTTTCCTAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TACCCTCTTTGATATA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TCTCAAATGAATCTGT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTCATGTTGCATATAG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CTATTAGCGTATGGTA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CTCACGGGGTCCGGCT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGTCCCGTATGCTCTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GCTCCTTTACTATATT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGTCTCGCGCAAGATC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CCAGAAGGACGACTTA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TATTGGTGAATTTCTA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CGTCCTCTTAACGGTG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TATTGGAATTTCCAGG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CGCAAGAAGGGCCGTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
AGCAGGGTGAACGGTT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTGAGCCTGGCTTCCC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
TGAATACTGAACCACG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GAGTACCACGCTCATT	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
CCGCGGCGGCGCGTTG	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GGGTTAAGATCTAAGA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
AAAAGGACCGCAGTCG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATCTCAGCAATGATCA	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
GTGTTAATTTTCTACC	alt_3685_RC	0	0	0	0	0	0	0	0	0	0
ACAACCTCCGTCGCCC	alt_2913_upstream	29	56	28	33	43	24	52	28	41	29
CCGATCTTAGTGTACG	alt_2913_upstream	9	7	9	6	13	13	6	4	7	3
AGATGGTGCGCTAGTT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CACCTGATAGTATGCA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTTAGCCCTTTTT	alt_2913_upstream	43	17	62	37	35	33	29	50	39	34
ATTCAATAAGAATTGA	alt_2913_upstream	14	5	6	8	6	6	7	8	7	7
CGGAAGGATTACGGGC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTGCATGAAGATA	alt_2913_upstream	17	25	18	19	33	14	27	18	37	17
CTTAAGAGATGCTCCA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTAGCGCTTTTCT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCCCAGGTTGTGC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
ACCACCTTGTTTAAAT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CGTCATTGATTTCTGC	alt_2913_upstream	1	0	0	0	0	1	0	0	0	0
GGTCATACAGCCTTGG	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTGGTCGATGGCA	alt_2913_upstream	54	53	58	71	57	52	42	49	54	65
CCTCTACGAGCAACAA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCCTACAAGGAGACTA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTAAAGCCTGGAATCG	alt_2913_upstream	33	69	58	75	81	35	68	69	80	44
CTCGGTAAGGTCCACG	alt_2913_upstream	3	4	2	3	2	4	5	4	4	4
GCCACGCTTTAGCAGT	alt_2913_upstream	109	181	183	150	180	141	177	138	193	127
CTCTTAATTCAAGTTT	alt_2913_upstream	41	55	60	43	44	38	57	44	50	32
CTTGGCTACGTACTTT	alt_2913_upstream	327	289	368	331	314	285	247	264	275	262
CATTGTCCGACGATAG	alt_2913_upstream	8	9	14	15	22	8	14	9	25	10
GTCCGTTCTCTTGGGT	alt_2913_upstream	4	4	8	3	6	3	6	3	8	2
TACAGACCCTGGCCCC	alt_2913_upstream	30	26	23	27	27	18	29	25	22	22
CTGCACCTCTGTATTA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCACGACTCCTG	alt_2913_upstream	23	33	19	26	30	33	26	13	19	22
GTTTGAATTTTGCTGC	alt_2913_upstream	10	4	19	16	13	6	14	11	7	3
GCAGATGCATTTAGAT	alt_2913_upstream	32	32	44	35	27	34	30	26	38	27
GCCGGCATTAGTAAGG	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCTCAATCTGTAG	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GCCCATCATAATGCAA	alt_2913_upstream	54	49	68	73	77	41	65	64	70	38
AGGTTTGGGTGTCGTT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTATAGTTCGCGA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTGAGGTACTTT	alt_2913_upstream	41	22	28	44	23	38	25	34	22	38
AGCGCATAGAATCGCG	alt_2913_upstream	14	13	19	22	18	21	21	18	14	20
ATGGATAATGGGCCGC	alt_2913_upstream	44	46	64	45	33	40	38	32	50	52
CCTTTGTCTGGGGACT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCTAATGTGGAGCGAC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCTACCGGACTCGCGT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TTACTCATGTTTATGA	alt_2913_upstream	16	8	13	11	12	9	10	10	12	13
TGGTCCCGTCTCTTTA	alt_2913_upstream	58	61	85	82	57	68	43	52	40	68
TTGTCCTTAGTGTCGA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CAGATGTCATCTCTCA	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCTATTAACAGCT	alt_2913_upstream	48	34	50	47	28	36	38	55	34	40
TGCAGAAGTTACTGCC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCCGGATCCGTAA	alt_2913_upstream	10	20	14	12	12	16	22	13	23	9
TTTATTCTTGGGTATC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCGTTGACAGTTT	alt_2913_upstream	17	13	8	14	8	10	10	11	17	4
TGCTGCCATGCTCTTA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTTTTGTAAACTC	alt_2913_upstream	62	44	61	65	56	69	53	78	51	54
GGACATGCGACATAGT	ref_2913_upstream	79	59	75	93	86	73	100	70	78	84
GAAGGATATCATATAC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GATTCAGGTCTTCTGT	alt_2913_upstream	88	77	97	92	91	84	89	101	97	63
CCCACCCACCTAAATA	alt_2913_upstream	16	24	30	25	19	9	15	15	20	17
CCGGTCTCCTCTCGTA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GCGAACTCCCAGTTCA	alt_2913_upstream	28	36	49	27	47	37	32	42	54	39
AAAGAAAGTGCACGGG	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GCTAATCCGTTGACTT	alt_2913_upstream	30	30	40	48	38	28	42	46	35	26
GCCCAAAGGTTCTAGA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
AGCCAGTCTAGTCTAG	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
ATATTGAATGGGCCCT	alt_2913_upstream	27	35	31	30	25	26	31	25	22	18
AGACTCAGTGTACTTT	alt_2913_upstream	42	53	65	51	49	45	61	49	59	48
GTTTAGTACTAATGTG	alt_2913_upstream	29	23	35	37	30	44	32	34	29	37
CTCGCGTAAGTCTGAA	alt_2913_upstream	84	76	122	100	81	82	89	86	97	71
ACATTGCCGTAGCTCC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGTATTCATTTAC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTAGAGTGCTCAC	alt_2913_upstream	4	1	3	2	5	1	2	5	2	1
CCCCCACTATTGGGTT	alt_2913_upstream	60	65	54	59	72	63	67	64	60	47
ATTCGCAAAGCTCCGT	alt_2913_upstream	110	74	147	131	87	98	99	104	105	119
TAGTCTCATCGGGTAC	alt_2913_upstream	71	50	84	48	66	71	50	69	84	75
AGCAGCGCTTGGCATT	alt_2913_upstream	24	29	30	26	31	18	24	28	38	16
ACGGTGTTTCTTACGC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTTAGATCGGCTC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CACAGTGCTGCTCAGG	alt_2913_upstream	48	37	63	41	51	51	52	54	39	51
AGGACATGTTTTTACG	alt_2913_upstream	102	113	127	113	84	101	75	82	99	86
CCCGTATTGTCTTTTG	alt_2913_upstream	6	5	12	10	8	11	11	6	10	12
GCAGTAGTCTATCGAG	alt_2913_upstream	24	22	19	17	26	19	18	17	29	18
TATTGGTAAGTTATTT	alt_2913_upstream	8	6	10	7	6	4	6	6	7	14
GACTCCTCTAGTCAGC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGTCTTATCCTCC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCGGCGTCAGTTC	alt_2913_upstream	15	10	14	14	14	17	13	8	15	10
CAGTAATCCTCCTATA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
AGTCAGTCTTCGTCTG	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GACTTCATTTTTTCAT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CGCAGGCTACGATAGT	ref_2913_upstream	30	62	26	26	69	22	70	28	63	17
ATGGGTTATAAAACCT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGCCTAAACCTGA	alt_2913_upstream	56	49	71	43	55	52	55	44	45	50
ATCCCCCGGGCCAACC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCAAATTAGCTGCCCC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCGTTGCTGTAGG	alt_2913_upstream	43	51	69	53	50	53	65	49	60	64
CTCATGCAGTACCGTC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTCGTAAGCCAA	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCATCGGCATATCAGT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTTCATTATGCAC	alt_2913_upstream	35	78	48	54	77	50	97	57	87	22
CGTTGCCGTGTCAGAG	alt_2913_upstream	11	11	18	8	4	10	8	15	21	9
CCGTTGGCCTTGTAAC	alt_2913_upstream	4	9	10	8	6	12	9	2	8	3
TACTTTACGAGTCATG	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGGTTGCTCTTTT	alt_2913_upstream	42	36	53	35	30	39	40	26	38	31
GCACTGTTTCCGAGGC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAAGCCCATGGCC	alt_2913_upstream	27	13	34	18	17	15	19	17	25	22
CCAGACTACTATACCG	alt_2913_upstream	14	89	18	20	87	15	105	14	109	21
GCGTACCAGTCACTCT	alt_2913_upstream	41	43	46	40	32	31	45	30	48	39
CCGGGTGACAAGGCGA	alt_2913_upstream	73	60	110	78	78	81	64	69	79	57
TATAAATCGGGGTACA	alt_2913_upstream	5	6	16	17	8	12	16	12	11	7
ACTTTTGGAATCTGTT	ref_2913_upstream	70	55	74	79	53	71	70	60	85	60
TTTGTGCACCACAAGT	alt_2913_upstream	12	16	14	21	15	10	8	23	16	14
GTGTTCTTGGGCGTCC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GTATCTACCATTGGTC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
ATATCGAGCTTCCAGT	alt_2913_upstream	60	46	83	57	50	62	42	59	52	46
CTCGCGTAGTACAGAT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GCATAGATTGCTTCTA	alt_2913_upstream	256	196	251	231	205	238	224	226	234	214
TAGCGTCTTCAAAATC	alt_2913_upstream	24	25	37	26	30	22	24	33	27	18
CATTCGTTCTCAGCAG	alt_2913_upstream	16	21	8	14	17	17	20	12	23	5
CTAACCGCATGTTTAC	alt_2913_upstream	41	39	43	62	45	39	42	43	45	35
GCTCTATGTACTTCCC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGCCCACAGTAGT	alt_2913_upstream	3	11	13	8	3	10	16	8	6	4
TATGTTGGCTTTTGGC	alt_2913_upstream	38	45	48	41	42	39	38	55	42	47
ACCATAACCCTGTAAT	alt_2913_upstream	13	10	12	8	11	3	2	8	5	8
AGCAGCGCTTGGCATC	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTTTATGAAAACC	alt_2913_upstream	32	34	36	29	32	31	38	41	36	30
ATTTCGGGCATAAAAC	alt_2913_upstream	7	8	19	14	12	7	5	16	11	18
GAAAACTTCGGAGAGA	alt_2913_upstream	95	76	122	85	77	86	81	83	79	80
ATACTCCATAGTGCTT	alt_2913_upstream	0	0	0	0	0	0	0	0	0	0
GGAGACCATGTTTACC	alt_2913_upstream	23	12	42	30	23	17	20	18	27	20
GTCATACGCCTTATGT	alt_2913_upstream	63	29	67	77	44	68	63	81	61	47
GAGGGCGTTTCTTGTC	alt_2913_upstream	19	18	31	33	17	23	12	22	25	16
AGCGGTAAGCTTACTG	alt_2913_upstream	8	11	15	7	8	6	7	8	14	20
CCTCAGAGGCCTGGTT	alt_2913_upstream	15	17	25	11	13	22	12	13	14	23
CCACACCCCATATGCT	alt_2913_upstream	8	20	7	12	24	8	19	8	19	3
AGATAATTCTGTATCG	ref_5941_new	11	16	13	9	6	11	12	7	15	10
CTCGTACAGGGCTATG	ref_5941_new	10	10	12	12	7	8	12	9	17	13
ATTTTTACAATGTCTC	ref_5941_new	4	2	10	6	7	3	5	2	3	5
AAATTCTAGCAGGGTC	ref_5941_new	17	23	24	20	23	13	31	15	24	13
GCGCTCTTGGGTGGCA	ref_5941_new	12	15	13	10	7	6	12	4	18	12
TCAATGGCGCTCCATA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
ATTTCCGGGCTTTTTC	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TGGCCGCCATCTGACA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GATTTTTGTATTGTGC	ref_5941_new	24	13	16	14	21	22	30	17	25	17
AGTAGGACGTTGGGCG	ref_5941_new	27	26	32	24	32	34	28	19	18	22
TGTTGGCAATCCGCGT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GTCGGCGTGGCCAGCA	ref_5941_new	6	9	23	11	8	16	9	17	8	9
CCTCGGTTAAATCTAA	ref_5941_new	21	30	34	21	37	23	35	24	29	11
TTTGGCAAGGCCCTAG	ref_5941_new	44	52	46	54	61	42	45	34	49	36
GCTGGTTTTCAGCATG	ref_5941_new	8	5	11	7	8	5	8	5	7	2
TCAACGATACGGCCGC	ref_5941_new	35	31	36	36	34	45	30	36	37	26
GTGTGCCACTGGTTCT	ref_5941_new	0	0	0	0	2	0	0	1	2	0
CTTAACAATTTACACT	ref_5941_new	22	18	9	19	21	13	16	17	14	8
GGTATTGCTTGTTGGT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TAGATGTTCGGATAAG	ref_5941_new	8	15	13	9	10	6	5	12	6	3
TTCAAAATCTTCGAAC	ref_5941_new	0	0	0	0	0	0	0	0	0	0
AATCCTGGGTATCTTG	ref_5941_new	28	26	30	27	29	35	40	28	46	18
TGAGGGTGCGCTCCAC	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GGTAGAAGACTAATTT	ref_5941_new	9	13	8	17	5	17	12	12	13	10
GTGTTATCTACAATCC	ref_5941_new	15	35	38	27	29	15	28	28	43	24
TGGTTTTGAACCAGAA	ref_5941_new	13	15	19	19	13	15	20	12	11	19
GTATATGGGTCGTGAT	ref_5941_new	37	38	42	26	43	28	36	37	42	29
AAAGGGTGACTGCGTT	ref_5941_new	6	19	15	10	16	12	9	9	11	5
TTGGTTTCTTCGCTGT	ref_5941_new	34	20	30	16	20	19	19	12	19	14
TTCATGAGCGAGGTCA	ref_5941_new	20	17	14	13	21	20	18	14	15	9
CTGGGGTACTGTTTTT	ref_5941_new	16	23	11	13	12	12	19	20	17	13
ATTTATCTACGTTGCA	ref_5941_new	7	7	9	5	11	7	7	9	8	16
AGAGGTACACGGCCAG	ref_5941_new	1	6	4	5	3	1	3	5	5	2
AACGCGGAAATCACGG	ref_5941_new	42	46	36	31	32	37	40	27	43	28
GCGTTCTAAGATTTTT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GATGTTATTGGTGTTC	ref_5941_new	13	13	16	19	8	18	18	15	23	8
GATGCGCTAGCGCAGT	ref_5941_new	6	13	10	9	8	7	11	8	12	6
CAGCAGATCGAAGCCA	ref_5941_new	0	2	2	3	2	3	0	0	0	0
ATTTCTTGATAGGTAA	ref_5941_new	16	16	16	14	18	18	16	14	17	15
TAACTGTTTTAACTAT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
CATCTTACTTATCCGC	ref_5941_new	11	16	28	12	11	18	12	14	19	12
CCATCTCTTTTGATTT	ref_5941_new	0	0	1	0	0	0	2	0	1	0
CTTATTGAATCCTCTA	ref_5941_new	5	4	8	4	12	3	7	3	5	7
GTTCGATTACTTTCGA	ref_5941_new	8	5	9	2	6	5	6	5	9	10
AGAGACAAACATTTAT	ref_5941_new	39	46	47	45	47	52	38	47	41	36
GCTCTTATCAGCCCGG	ref_5941_new	49	51	60	59	78	61	62	50	91	48
CAGGGTGGGCTTTTTA	ref_5941_new	42	41	62	43	57	43	50	45	46	34
GCGAGTTTAACGATCG	ref_5941_new	18	14	21	16	21	13	25	16	13	15
AACATACAGCCACCTG	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GGCGTTTACATACCTT	ref_5941_new	1	26	2	3	22	2	23	5	15	2
ATGGTACAGCGTTGGC	ref_5941_new	36	34	32	29	43	19	39	22	37	21
CTAGAACGTAATTCCT	ref_5941_new	90	105	108	100	104	78	116	70	113	85
CAATTTCCGTAGAACG	ref_5941_new	13	9	18	16	18	16	6	15	17	19
CCGTAATTCGGGAATT	ref_5941_new	0	8	0	1	4	1	8	0	7	0
GTTTGGTTGCGGTATA	ref_5941_new	2	9	4	0	3	5	3	0	2	4
GCCTCAGATGTTGGGT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
ACCTTCGAATTCTCGC	ref_5941_new	53	46	64	48	53	44	59	34	55	44
CTTAGGTACGAAATGT	ref_5941_new	35	43	44	34	44	32	50	31	57	38
TGTCTTTAATCATACA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TGTCAGATACTTGCGG	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GGCTCTATCGATATCC	ref_5941_new	63	53	71	52	64	57	82	41	70	80
AACCCTTTAGCTTAAC	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GTTCTTTGTAGCGTCC	ref_5941_new	97	89	102	90	119	73	129	98	124	86
CGTCTCATGGAATTTT	ref_5941_new	22	16	24	25	22	13	19	22	24	21
GGTACTTTGATTACTC	ref_5941_new	4	6	11	10	8	5	7	3	6	4
TCGAACTACTCCATTC	ref_5941_new	20	28	33	26	33	21	30	20	22	20
CGATTCCGGTAGAATC	ref_5941_new	172	174	204	162	216	147	204	159	209	150
GACTTTATATAATCAT	ref_5941_new	5	3	7	3	7	5	6	8	11	8
CTACCCCGTACTTCAT	ref_5941_new	22	92	40	20	81	22	91	28	81	20
ATCTATAGTGTCCGAA	ref_5941_new	19	21	23	17	18	18	19	16	23	14
CAAGACAGATTGGATT	ref_5941_new	6	3	7	3	7	1	4	2	6	5
TGAGTTGAACTTACCG	ref_5941_new	4	19	8	8	12	9	22	4	29	6
GACACGGTCTGAAGTA	ref_5941_new	12	39	13	5	38	11	38	7	39	13
TATCCGAATCACTTCG	ref_5941_new	18	21	26	16	20	17	24	18	24	14
ATGGAGGTGCGCGATG	ref_5941_new	24	24	32	25	40	29	37	20	28	31
TTATCTCCTGCTTTAC	ref_5941_new	0	0	0	0	0	0	0	0	0	0
CGGTTGCGACACCGTA	ref_5941_new	15	12	18	20	22	10	18	14	17	14
ATTCGTTTCATCGGGT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
AGGGTCGATCAATCTG	ref_5941_new	42	43	41	36	45	39	64	24	57	32
GCATCAGGTTCTGAGT	ref_5941_new	21	31	15	15	19	20	26	21	17	21
CAGCTTGGCGACGTTT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
CCTTATGTTATCTAGC	ref_5941_new	44	68	53	43	55	41	77	45	50	43
GATGCTAACCCTTTTC	ref_5941_new	30	24	21	20	32	19	18	17	22	12
ACCCTTGTCTGAGGCA	ref_5941_new	36	50	30	29	67	24	48	32	46	25
CCATCGGGGTGACGAC	ref_5941_new	0	0	0	0	0	0	0	0	0	0
CGGCCAGGTACTCTCA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TTAAAGCGACTCCGTC	ref_5941_new	0	0	0	0	0	0	0	0	0	0
CACAATTGCTTGATGG	ref_5941_new	17	9	12	14	7	7	12	10	16	4
GAACTTATCGCGCTTT	ref_5941_new	37	38	70	66	48	50	58	60	53	40
TTACGCGCGGTATCCT	ref_5941_new	7	9	5	9	2	4	11	4	3	7
TTTATCTTATTAACCT	ref_5941_new	11	6	15	10	11	10	16	6	9	9
CTCTTTTACCGGCTTT	ref_5941_new	39	58	60	59	53	53	61	48	62	31
TTGACTGCGATTACGT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TCCCTACTTGTATGGG	ref_5941_new	22	19	12	7	15	9	14	17	19	15
CTAATGGAAAATTAGC	ref_5941_new	26	36	44	29	42	29	40	21	37	39
GCAGCAAGTCCCATCC	ref_5941_new	0	1	0	0	1	1	0	0	0	0
GCGTAGTTATCCGGAT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TTGCACCGAGAAAAGA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TCACTCAAGGACGACC	ref_5941_new	36	41	44	31	29	38	54	30	40	25
GCTGAGGCCAGGTAGT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TTGACAGGTCGCTCTT	ref_5941_new	9	10	9	11	10	9	10	13	19	4
CTCGCGTTGACTCTGT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TGGCTCGATATAGTTG	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TACTTCGCGATTTCAA	ref_5941_new	70	81	91	64	83	72	85	76	93	68
CGTTGTTCGGTGATTA	ref_5941_new	9	19	8	13	18	8	16	7	13	10
TGCTAATGTTAACATA	ref_5941_new	0	1	3	0	1	0	1	1	0	0
TGAAGTAAAGCCGGTT	ref_5941_new	7	12	14	6	12	15	16	8	17	12
TCTTTCGCTCGAAGAA	ref_5941_new	16	11	12	17	22	6	18	18	17	9
TCGGAAGTTTTCTCTT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
TCGGTTGTACCGTGTG	ref_5941_new	13	16	14	13	12	19	21	15	24	12
TACAGCCTCAAGTCTT	ref_5941_new	0	0	0	0	0	0	0	0	1	0
CCTCCGGAACCTGCGC	ref_5941_new	0	3	3	2	0	6	7	0	5	4
GTCTCCAGCGCTACAT	ref_5941_new	0	0	0	0	0	0	0	0	0	0
ATTGGCGTGCGGTATA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
ATACTGTTAGGGTCCA	ref_5941_new	12	17	15	12	13	14	9	18	10	13
TTTCCAGCCTAAGAGT	ref_5941_new	66	94	67	51	75	52	91	66	105	56
ATAATATGTCTCTAAG	ref_5941_new	8	4	16	6	10	7	9	7	5	6
TTTCCGGACTTTCGTC	ref_5941_new	39	56	49	57	59	35	47	46	55	43
TCCTCAGAGGGACTCT	ref_5941_new	71	102	54	65	88	55	77	43	76	47
AGCATCAAAGCCAGCG	ref_5941_new	0	0	0	0	0	0	0	0	0	0
ACATCTCAACGTATCT	ref_5941_new	9	18	17	18	20	14	25	19	17	9
GTCTTCTATTGTAGCT	ref_5941_new	76	88	72	62	78	64	86	53	99	61
ATGGATGTTCGCGTGG	ref_5941_new	26	20	23	17	34	16	26	17	26	8
GCGTTAATGGTGTCCG	ref_5941_new	8	8	22	6	12	9	17	11	22	7
CTCGTCGTTCGCGCCA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
GGGCTCGGGCTACCCC	ref_5941_new	5	1	1	6	1	0	1	1	4	4
CTGAATCATTTCATCC	ref_5941_new	21	13	24	19	22	17	24	15	23	19
GGCAACACGTTCGTCA	ref_5941_new	0	0	0	0	0	0	0	0	0	0
CTATTGTACCGACAAT	ref_5941_new	10	19	14	11	12	12	11	11	8	10
TATCCATCTATTTATC	ref_5941_new	20	18	28	24	20	11	20	23	14	14
TTCCCTTTTGGCGACT	ref_5941_new	17	8	18	11	23	24	17	11	31	20
TCACTAAAGTCTGATA	ref_5941_new	10	24	16	10	24	7	19	8	27	17
GGTCCACAGGCCGCCA	ref_5941_new	45	16	51	43	44	42	54	37	58	34
TACACCCTGTTGTCTC	ref_5941_new	1	6	1	5	6	1	3	3	4	4
TTCTCAACTTGCTCGC	ref_4632_reverse	6	4	3	2	5	2	6	6	7	0
GGTGATTTTTAGTTGT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATGAAGACTTTATTCT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CAATTTTTTAAGAGAG	ref_4632_reverse	16	20	20	14	24	11	24	11	24	11
TTTACAGTCCTTCTAG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTATAGTGAGTTC	ref_4632_reverse	15	37	23	14	30	16	41	15	39	15
TCTCGGGGCAACTTAG	ref_4632_reverse	9	31	14	5	35	8	30	7	42	6
CGAGTGCCTTAACTGC	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGTCTTGCAGGGC	ref_4632_reverse	7	23	16	11	17	6	20	10	23	5
CATTGTCCTCATTGCG	ref_4632_reverse	4	0	3	0	1	0	6	0	15	2
ACTGGTGGTTGTAAAA	ref_4632_reverse	1	4	3	3	9	5	7	3	7	5
AATACGGTGTCCCATC	ref_4632_reverse	12	18	21	7	20	6	26	13	27	13
GACGTCTGTCCGATAA	ref_4632_reverse	12	21	19	19	33	12	22	10	28	13
GGTCTTCCCCGGCCAG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTGCGGACGAATT	ref_4632_reverse	2	2	4	2	2	4	3	2	3	2
GCTCCTCTATTTAGGG	ref_4632_reverse	3	13	8	4	18	3	17	12	12	6
TCTGTTCACTCCCTCG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTCTAATCATCTT	ref_4632_reverse	11	42	30	24	41	14	66	13	44	17
AGCGGCTCCCCATTCT	ref_4632_reverse	8	36	8	1	23	8	34	6	39	9
CCTTAGTATTAGTTAT	ref_4632_reverse	8	8	8	4	8	3	8	3	24	4
CTTCCCTGAAACTCCA	ref_4632_reverse	78	155	96	73	139	73	173	72	160	68
TTACGATTTCATCTAA	ref_4632_reverse	0	4	0	2	4	2	3	4	1	1
TGTGCGTTCGGGTCGA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ACACAGTGCGGTTCTA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTCTACTCTATGA	ref_4632_reverse	16	62	22	24	53	22	45	22	37	18
AGCTAATTTTGTACTT	ref_4632_reverse	7	8	6	4	14	6	13	6	8	4
CGCATAATGGGGGCTC	ref_4632_reverse	3	3	4	2	7	1	7	3	5	1
CGTCCTCGAACCTCAG	ref_4632_reverse	3	9	5	9	12	6	13	8	12	7
GCCCCCTGGTATCTCT	ref_4632_reverse	10	18	15	9	24	16	37	19	43	8
GTTTGAGCAACTCGGG	ref_4632_reverse	5	10	4	7	9	4	3	1	8	3
AAGGAATTGGATATCT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
AGTCGCATTGTATAAT	ref_4632_reverse	9	18	7	2	11	9	9	6	13	4
GAGTCCATTTATAAGG	ref_4632_reverse	8	8	6	3	13	3	10	4	17	2
CGGTGCCTAATTTGAA	ref_4632_reverse	4	12	8	7	11	5	9	3	9	4
GGAAGCTACAATACGT	ref_4632_reverse	13	40	10	15	32	18	47	9	38	18
GACTGTAGCAGTACCA	ref_4632_reverse	25	58	39	33	59	33	70	22	72	27
AATAGCCGCGTGTGAC	ref_4632_reverse	29	64	52	30	71	26	77	27	87	39
TCCTGAGCTGCGCACT	ref_4632_reverse	76	182	82	64	170	81	194	60	143	56
TTTGTAAGCTTAGTTA	ref_4632_reverse	7	24	10	8	30	9	18	12	26	13
CCCGTGATTTTATGTA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CCACCTGCACCTACTG	ref_4632_reverse	10	28	13	11	20	12	20	4	25	2
CCCTCGTTGGGGCAAT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TCCAATATTTGGACGG	ref_4632_reverse	4	10	4	4	6	2	3	7	2	3
CCATCGAGGTTCAGGA	ref_4632_reverse	12	13	21	15	17	13	16	11	20	10
AAAGAGTGATAACTAT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GAATCATGGCGAAGTG	ref_4632_reverse	20	34	30	22	25	17	40	24	36	12
CGGCCCCTATGTGATT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAACGGAGGTACT	ref_4632_reverse	26	28	19	25	50	17	45	22	59	19
CACCGCTAGGGCTAAT	ref_4632_reverse	7	13	7	4	14	10	14	7	13	4
AACCATCCAGGTAATC	ref_4632_reverse	10	14	8	4	9	7	29	5	17	10
GGCGGGCACTCACTTT	ref_4632_reverse	2	5	0	0	3	0	2	0	1	0
GAATATTAATCCACGG	ref_4632_reverse	29	37	36	24	48	26	36	25	31	25
AGGAGCCTCTAGCCCT	ref_4632_reverse	6	15	7	3	12	8	9	5	23	5
CCGATCTAAGGTGGCT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTGCACCCTAGTGTAC	ref_4632_reverse	11	28	8	5	17	12	19	12	33	12
CGTTCATCGAGAGCTT	ref_4632_reverse	8	42	20	14	30	16	37	18	39	14
TTAACGTTCATATAAT	ref_4632_reverse	9	18	8	7	20	7	18	5	18	6
ATTTCATTTGGGTTAT	ref_4632_reverse	18	44	22	12	41	17	34	19	37	14
TTCTTTGTGTACAACG	ref_4632_reverse	11	43	27	23	47	22	65	27	50	11
AGGCCTTTTTCTTGCT	ref_4632_reverse	26	56	39	17	65	27	58	34	59	26
GTAACCTGTCGTGACC	ref_4632_reverse	18	33	17	8	28	8	21	11	26	13
TCATTTAGTTGTAAAG	ref_4632_reverse	10	43	22	22	35	16	20	11	34	11
TCGTGTAATCCTGCGA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GCCTAATTTTTCTCCT	ref_4632_reverse	6	6	7	4	5	3	9	6	19	2
CCTCTCTCCATCTCTA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCTACCCATGCAA	ref_4632_reverse	35	72	41	42	80	39	89	37	87	37
TCACCGCGCTACGTTT	ref_4632_reverse	3	3	6	2	3	1	10	2	4	4
TTTGTTAAATACCCAG	ref_4632_reverse	38	72	43	32	82	32	91	41	85	27
GAATAAATCACCGATC	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CACCATCGGGTGTTGC	ref_4632_reverse	1	5	1	3	8	1	2	3	2	2
GGGCGGGACTGGCAAA	ref_4632_reverse	47	86	43	56	96	32	82	46	80	46
CCGAGTGTGCGCTCTG	ref_4632_reverse	6	14	7	11	15	7	14	13	17	9
CTCTTTAATACCGGCT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTATTTCCCTAAAATG	ref_4632_reverse	1	1	4	2	5	1	8	1	6	1
TGTTGGTCACATAAGC	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GACACGGTTTGGGACG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTAATGCCTCATGCTT	ref_4632_reverse	11	32	18	12	29	13	31	7	32	15
ACCAGCCAGTGCTCTT	ref_4632_reverse	3	25	12	7	34	5	21	3	29	7
CGTTCGTCTAAAGCTA	ref_4632_reverse	12	13	14	9	10	11	17	10	18	4
AGGTTGGCTCATCCTG	ref_4632_reverse	3	6	4	3	3	1	4	2	2	1
ATGTCTCCAGTCTTTC	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCGTGTCTGCTAG	ref_4632_reverse	11	10	4	5	12	16	17	7	18	10
AGCGCCGCGCCGCATT	ref_4632_reverse	0	1	0	0	2	0	0	0	0	0
CCCCTTACGTTCCCGA	ref_4632_reverse	14	32	26	11	28	14	38	11	31	5
TGTTTGCGCGTATTGG	ref_4632_reverse	4	3	4	1	9	2	5	3	6	2
CGCGCTTGGTCTGTTC	ref_4632_reverse	29	44	43	27	70	18	75	29	60	12
GCACCGCTAGACGACA	ref_4632_reverse	3	4	1	4	8	3	8	3	8	1
CCCAATCCGTTGTGCG	ref_4632_reverse	10	16	7	11	15	4	18	7	20	4
AATCATCTTTTCCAGG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCCATTGGGTGTG	ref_4632_reverse	15	72	12	27	71	25	88	16	72	21
TCGCAGATAGATTCCA	ref_4632_reverse	14	15	11	10	20	6	14	10	11	5
CGGTCGAATTATTTCG	ref_4632_reverse	51	91	64	35	81	63	93	30	93	37
CTCCTGGTTCTGAACG	ref_4632_reverse	16	69	25	22	66	14	57	21	64	12
GGTATAAAGTGGGACT	ref_4632_reverse	2	11	13	1	17	5	9	2	3	2
ATATCACTGCTTACGA	ref_4632_reverse	68	137	92	82	132	74	123	44	143	81
TTCTGCAACACTCCAT	ref_4632_reverse	2	1	2	0	1	0	3	0	0	0
GCCTACCCCGATCCCC	ref_4632_reverse	1	4	2	0	4	0	4	4	2	0
TCATTTCGAGCAAGTT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGTCTTTCACCAT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGCTTTTATAATT	ref_4632_reverse	17	24	10	6	20	14	47	10	23	9
TGTTGAGAACCAATTT	ref_4632_reverse	17	53	31	29	34	19	42	20	51	20
AGTGAGACTTTGGCAC	ref_4632_reverse	4	5	2	0	4	4	14	2	9	1
TTTATAGCATTGTCTG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTCCAGGCATTCT	ref_4632_reverse	1	9	4	2	6	0	7	2	4	2
GTGGAGAACCGCGACA	ref_4632_reverse	154	334	199	132	352	141	359	118	330	133
GAACGGGGGATGCTCG	ref_4632_reverse	9	15	10	10	23	8	22	10	24	10
CACGTCCGCTTTGACA	ref_4632_reverse	24	51	20	20	47	10	52	19	62	19
AGTCAGTGACCAATGT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCCTGCCCGAGGC	ref_4632_reverse	3	19	6	11	19	8	18	12	19	8
TCCGATCGATATGTCA	ref_4632_reverse	0	1	4	1	8	1	9	4	3	2
AGGATTAGTGATAGCT	ref_4632_reverse	9	8	13	5	11	9	19	11	20	5
GTCTCCGTGTGGTTTG	ref_4632_reverse	5	13	8	20	11	3	13	9	22	2
GACTTCGCCCGAGGTA	ref_4632_reverse	5	11	7	3	12	4	13	5	17	10
TAGCCTTACGTACCAC	ref_4632_reverse	4	20	1	7	13	5	33	7	27	4
ACGGGACATTCGTGGC	ref_4632_reverse	23	37	26	17	47	29	46	12	40	16
ATAAGTAAATGATCCG	ref_4632_reverse	27	45	31	24	56	30	56	16	43	14
CCGTTCCTTCTAAGTC	ref_4632_reverse	17	43	14	12	34	19	45	16	48	13
ATATTTAGGGTGCTGT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGTAGTAAAATGA	ref_4632_reverse	6	8	6	3	13	7	15	11	27	5
TTTACTCAATGCTTTT	ref_4632_reverse	24	89	41	39	82	27	57	26	88	33
TCACTGACACCATTGC	ref_4632_reverse	3	8	5	3	9	3	5	10	7	7
CCAGGTCAAGTCGTAC	ref_4632_reverse	14	86	17	10	72	12	78	10	112	17
CGTCTTGTCAATTCCA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CTTATGAGCAAGCTCA	ref_4632_reverse	10	19	25	4	19	7	15	6	17	6
GGTTCTCGCATTGCCG	ref_4632_reverse	24	55	35	22	67	22	54	30	43	19
AACAATCATTTTCAGG	ref_4632_reverse	28	80	55	41	108	45	92	32	67	35
CGGCCCCTATGTGAAT	ref_4632_reverse	212	776	296	253	793	223	758	226	787	204
AATATGGGTTTTCTTA	ref_4632_reverse	0	2	0	1	1	0	2	1	2	0
GCAACCTCACCGGATT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCTATTGCTCCAC	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTCATTCGGGATG	ref_4632_reverse	24	30	28	18	34	15	57	15	45	27
AAAATCCGCCAATCTC	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTCACAATCCGTC	ref_4632_reverse	6	9	6	6	7	9	8	9	20	4
ACTACGTGGTATCTAT	ref_4632_reverse	2	5	6	2	4	0	13	7	5	2
TTCGTTGACTCATAGT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
AAAAATCTGTCGATGG	ref_4632_reverse	1	1	0	0	1	0	0	0	5	0
CATTACGGCAACCACG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GCTGATGGCACCTCTT	ref_4632_reverse	0	3	1	2	5	4	5	1	4	0
TCCAACGAGGAATTAA	ref_4632_reverse	28	101	53	52	78	44	81	28	123	36
GAAAGTTATATATGGC	ref_4632_reverse	17	30	21	12	34	22	28	25	30	18
GACCATCCTGCAGGAG	ref_4632_reverse	3	13	6	8	19	8	19	6	21	3
TTCTGTCTCCGTCACG	ref_4632_reverse	4	6	3	1	8	5	10	1	8	2
GCTGTCGGCGACTCTG	ref_4632_reverse	76	120	82	69	137	66	133	70	139	59
TGGTATGCCTTATCGG	ref_4632_reverse	15	34	13	19	20	20	31	14	30	13
CAAGTACAGAGGCGAG	ref_4632_reverse	16	44	33	16	57	24	45	19	56	17
TCTCCGACGCCCTGAC	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GGGCAGCTAGCATATA	ref_4632_reverse	0	0	0	1	2	0	0	0	1	1
CAGTCTAGTAATTGTT	ref_4632_reverse	11	20	12	9	17	2	20	4	20	6
GTCCAGGTGTTAGAAT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
AGGGATTTTCGAAATT	ref_4632_reverse	27	63	44	29	52	30	65	34	62	31
TCGTAAACGTTTCCAA	ref_4632_reverse	20	50	28	21	52	16	38	19	39	15
TTCAGACATAACGCCA	ref_4632_reverse	21	60	37	25	51	23	51	23	49	23
CTTTGGTTTGTTAGCT	ref_4632_reverse	7	27	10	3	22	14	33	21	19	10
CCTGAGTCTACTCAGT	ref_4632_reverse	1	4	4	3	8	3	10	1	4	0
TCAGGAGCCGAGACAT	ref_4632_reverse	2	11	8	3	4	6	8	8	10	10
CTAGGAAGTCCATGGA	ref_4632_reverse	3	8	7	4	14	8	16	4	14	4
CGAGACCCTTGAGTCA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATCTAATCATCC	ref_4632_reverse	3	3	4	4	5	1	5	5	2	4
CCCATCCACCGAGATG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGTTTTAAAAGTC	ref_4632_reverse	22	23	22	16	40	21	50	19	52	14
ATTATGCGGCCTTAAG	ref_4632_reverse	14	30	9	15	27	14	17	9	31	17
TAGGAATTGGATATCT	ref_4632_reverse	197	404	211	158	416	174	390	193	383	174
CTTTAACTTTCGATCG	ref_4632_reverse	6	7	5	4	13	2	14	6	7	4
TCTCTTAACTCTCAAC	ref_4632_reverse	4	15	11	5	6	3	9	3	8	2
ATTACTTTCGTTACGG	ref_4632_reverse	7	8	2	6	18	5	16	5	14	7
ATCAGGCTCTTTTGGC	ref_4632_reverse	5	10	2	5	6	7	7	1	10	5
GTCCGAGTTCTTTCGA	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
AAAATGAGACGAAGGT	ref_4632_reverse	60	102	64	48	87	46	107	44	108	33
CGCGTGAATGTGCTCG	ref_4632_reverse	6	7	10	1	6	8	15	8	12	6
CTTCTGGTTTCGTCTG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CAAGATGTCATACAGC	ref_4632_reverse	6	15	7	9	18	5	15	7	15	4
GTAGTAAGGGGACTGT	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCTATGGAGCTGG	ref_4632_reverse	3	5	4	1	3	0	6	1	2	1
GAGTAGTGGGGCTGAC	ref_4632_reverse	27	34	26	20	34	13	64	18	49	28
TGTTTTCCAACAATAT	ref_4632_reverse	19	25	23	17	44	14	32	8	37	12
TCCAGAAACCGATCGC	ref_4632_reverse	5	12	9	6	27	11	15	5	29	5
GCATATCTTTATTCCT	ref_4632_reverse	15	34	20	20	41	17	35	13	35	12
CCTACGCTCAATAGGC	ref_4632_reverse	8	25	3	8	21	10	39	8	26	7
CCACTGGAGAGTACTG	ref_4632_reverse	1	1	2	1	1	1	2	0	3	2
GAGTGCTGCTTCCGGC	ref_4632_reverse	11	16	14	15	24	11	27	9	25	14
AGCTCTTAGAACACTC	ref_4632_reverse	7	13	6	5	12	5	6	1	12	4
GATGTTTACTGTAAAG	ref_4632_reverse	32	76	32	38	81	42	81	29	90	36
AATAGTCTTGTCCTCC	ref_4632_reverse	10	27	24	14	35	15	33	9	30	17
TTCTCGGGATCAACTG	ref_4632_reverse	0	0	0	0	0	0	0	0	0	0
CGTCAGCGCTAAAAGT	alt_2913_fdr	15	6	14	11	10	17	17	13	6	9
AAATTACTGACATTAC	alt_2913_fdr	8	10	5	3	12	5	12	5	15	2
CTCCTTAGCCGGCGTA	alt_2913_fdr	10	13	26	18	9	14	15	8	14	11
GGTCGATTGGTTTGCA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CATGTTAGCTCGGTAT	alt_2913_fdr	9	9	7	6	6	10	6	8	4	8
TGGTTTACTCCATGTG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
AACTGCCAGCCGCCAG	alt_2913_fdr	10	14	16	12	13	14	14	21	15	11
GGTTGGATCTAAGACT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
ACCGATACTGAGATTT	alt_2913_fdr	22	25	23	34	23	32	11	16	22	26
GCCAGGCTTTATCCGT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCCAAGTGCCAA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCGCATGATTTCC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CATATGGTTTACAGAC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCGCGATGTCCA	alt_2913_fdr	15	21	26	16	12	7	24	21	21	14
TGGTCGGGATGCGGGA	alt_2913_fdr	17	8	15	10	14	5	10	12	11	8
GTGGACTTCTTTAGTC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTTGACATAGTAG	alt_2913_fdr	83	63	68	55	43	49	77	53	73	49
TGGCACTGTATTGTCG	alt_2913_fdr	226	211	275	214	198	199	216	216	202	210
CCTGCTCTATAGCGGG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTCGGGAGCCCTT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTAGGGTCCGGGA	alt_2913_fdr	61	54	58	60	49	69	44	54	70	49
TTTCAGTTTTTGCCAC	alt_2913_fdr	0	6	2	0	4	0	2	0	4	1
GGGACATTTGACTGCA	alt_2913_fdr	87	69	121	105	101	97	82	102	78	81
CACAATTGGTTACCCC	alt_2913_fdr	4	5	10	4	8	3	5	5	5	6
TATCGTCGGGCACTGT	alt_2913_fdr	21	31	19	25	19	13	24	9	27	18
CATGAGGATTGGTTCG	alt_2913_fdr	13	15	15	13	14	14	11	22	23	11
CGTGGGATCTGGGCAG	alt_2913_fdr	32	21	32	33	20	24	22	28	23	23
CTCGGTTTCATTTTAC	alt_2913_fdr	3	4	9	8	2	2	2	0	9	3
ATTTTGTTTCTGCATG	alt_2913_fdr	87	78	79	80	65	74	71	55	66	70
CCAATTTGTTTCGTCA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GGCGATCGATGCGGTG	alt_2913_fdr	46	26	65	44	28	35	54	36	32	40
CTTTTACCTGCTCCGA	alt_2913_fdr	42	48	54	42	51	38	40	44	50	55
GCTAGCGCTCTGATAT	alt_2913_fdr	131	106	138	130	111	117	117	96	112	112
GGGACTCTCTGTAGAT	alt_2913_fdr	11	8	16	26	10	16	3	21	10	18
ATACCGAGTCGGCGTC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CATGATTTGATGCGGT	alt_2913_fdr	10	6	9	23	8	8	11	9	10	15
AAAGTTCCGAGCAAAC	alt_2913_fdr	40	24	32	23	24	26	24	16	21	16
ATTGGGTCCTGCTTCC	alt_2913_fdr	49	41	62	68	35	40	34	52	28	50
GGAATTGAAACTGCTC	alt_2913_fdr	95	71	112	108	69	80	59	90	105	76
GGGTCGGGGGCTGTCT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGATACCACGTAG	alt_2913_fdr	26	28	28	37	28	24	32	25	29	28
AGCCGCTTTTAATAGT	alt_2913_fdr	12	20	20	8	15	10	15	4	17	8
TCCAGTATACAATAAA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTCGCGTTAGCAT	alt_2913_fdr	122	110	158	125	120	107	125	127	127	122
TAGATGGTGAGCCGCA	alt_2913_fdr	49	44	82	79	40	73	73	67	60	48
GACAATATACCTTTGA	alt_2913_fdr	20	15	18	20	15	15	14	20	13	16
AACATTGTGAGGTTGG	alt_2913_fdr	2	2	3	2	1	4	8	1	5	2
CCCCGCGGGTGCTTCA	alt_2913_fdr	3	39	4	4	41	8	39	4	46	8
CAGGCTCCCTTCAATA	alt_2913_fdr	21	14	14	12	16	14	22	13	23	24
TTTAATATTTATGTCT	alt_2913_fdr	83	46	109	87	62	75	85	95	69	70
GCACTTTTAGGTCTTC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCCTTTTATGCTG	alt_2913_fdr	21	21	34	32	27	27	25	30	24	27
TTTACACCGGTGAATC	alt_2913_fdr	21	19	22	19	22	22	16	24	25	25
CTCAGTCATAAATACC	alt_2913_fdr	165	155	220	180	151	183	169	137	214	135
ACTTTAGCGCATGGTC	alt_2913_fdr	30	28	27	33	15	21	26	24	34	21
TCTCCCACGATCCAAC	alt_2913_fdr	99	69	93	92	88	79	82	96	95	68
GGCTCGGGTGTGCGAC	alt_2913_fdr	28	36	40	51	38	36	46	25	46	29
TTTACACGCGAATGTC	alt_2913_fdr	38	35	59	55	37	47	34	37	48	42
GTAGTGAATGCTCTGC	alt_2913_fdr	14	14	13	14	9	13	13	19	14	7
GTAGGAAATGCCCCAA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCTGTCAGCTTAC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTTGACCCGCTT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCGTAGGTATCGGCTG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGGCGTTGACTCG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGGGTGTATCGC	alt_2913_fdr	16	10	17	15	13	7	11	7	12	13
GGGAGTGCCATGCCTG	alt_2913_fdr	64	57	88	70	58	62	49	77	63	65
TGCCATTTGTACTGTG	alt_2913_fdr	2	0	4	2	2	2	2	3	1	2
CTGGGTTATAACATCC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGGATCAGTCGTA	alt_2913_fdr	116	135	134	100	157	89	149	107	152	96
ATTGCTCCGTCGTGCT	alt_2913_fdr	15	25	13	19	23	11	29	21	33	19
TGGTATGACGTAACGC	alt_2913_fdr	50	60	66	50	56	56	45	37	42	39
TGCCTGATTATGCTAG	alt_2913_fdr	35	26	47	43	30	38	29	46	32	40
GGATCGCGTTTGTCGG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CAATGCCTCATGAACG	alt_2913_fdr	36	86	79	58	53	42	71	58	62	48
CCAGGTAGAGAATAAT	alt_2913_fdr	15	22	28	29	14	28	24	17	25	10
GCTGGTTTTTCTCCAC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
AGGACTTCCTAGTTTT	alt_2913_fdr	1	0	0	0	1	0	0	0	0	0
GGACTCACATTTCCCG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGCCATTGTTCGCCTG	alt_2913_fdr	10	12	9	13	10	9	10	9	13	13
CCACGTTCTAATCCTG	alt_2913_fdr	8	5	1	3	4	1	6	2	4	3
CGTGCGTGTTTACATC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTTATTTTTCCAA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TCGACGACGTTGATTT	alt_2913_fdr	37	15	37	33	28	36	22	32	18	29
TGACTCGTCGTGCAAC	alt_2913_fdr	29	30	48	35	42	36	41	28	40	37
GTCAGGATCTATCCCT	alt_2913_fdr	8	15	3	12	8	10	10	9	12	4
TTTATACGATACTTCC	alt_2913_fdr	3	2	3	0	5	4	5	2	5	9
ATTGGGCACGTTTTAC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCTCATATATTTC	alt_2913_fdr	50	52	46	41	30	29	53	38	38	33
AATAATGTAGTGTGTC	alt_2913_fdr	32	15	37	27	28	25	24	22	32	20
AGAGCGTCCCTTACTG	alt_2913_fdr	84	66	66	93	57	64	71	66	55	64
TTCAATCTAGAGCCCT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCACGATCTATGT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGCATCGGGTCCG	alt_2913_fdr	60	55	88	41	60	58	50	58	66	69
TTTAAGCATTTATACT	alt_2913_fdr	6	11	14	1	5	6	3	5	3	5
CAAATTTTTCTAAGCA	alt_2913_fdr	6	6	6	5	5	7	6	8	7	2
AGTGGGTATTGTTTCT	alt_2913_fdr	15	7	17	6	5	5	2	9	11	1
ATGACCACTCTGTCCA	alt_2913_fdr	24	10	17	18	16	13	18	20	17	12
CTGTCTAGTCTTTCAA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CGGCACGCCGCCTACT	alt_2913_fdr	68	41	64	61	29	51	50	54	45	36
TACTATTGCAGTTAAT	alt_2913_fdr	15	15	29	13	16	20	16	17	10	20
TGATTTAGTATGGAGC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TCCTAAACTTTTAGGG	alt_2913_fdr	6	12	10	8	5	8	7	5	2	6
CTCAACTTAGCTAGAA	alt_2913_fdr	34	26	26	42	39	35	26	38	29	36
TAGCTTTCGATTCCTG	alt_2913_fdr	2	2	1	3	1	5	6	0	6	2
ATGTAACTGTTTTGCC	alt_2913_fdr	6	5	8	10	11	10	11	11	15	8
GGCGGTGGACATTTGG	alt_2913_fdr	14	5	10	12	8	12	13	10	9	5
ATCGAAGAACACAATC	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
GATCAGGCTACCTGTT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
ATATTCGATGAGGGTC	alt_2913_fdr	18	10	20	21	17	23	25	23	23	23
ATCATCCGTCTTGTGC	alt_2913_fdr	3	2	3	2	3	3	1	2	1	0
CAAATGCACGTTCGTA	alt_2913_fdr	35	29	48	45	34	31	48	38	29	29
CACAGCCGGGCTGATG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGGGTCGCCTGTG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CATTGCAACCTTATAA	alt_2913_fdr	26	45	37	42	36	31	30	39	44	30
ATCCTCATTGTTCGCG	alt_2913_fdr	19	20	34	26	24	17	19	29	22	13
TAACCGAGGCTAGCCT	alt_2913_fdr	9	8	5	12	9	5	2	11	9	3
ATCCTACTGTCTCTCA	alt_2913_fdr	34	35	35	45	26	30	41	26	37	27
TTGAGTAAGCCCCTAT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGTAAGCTTCTGT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CCCTACTTGTACGATC	alt_2913_fdr	34	23	57	40	48	31	43	37	48	33
ACGTTACCTACCCGTC	alt_2913_fdr	2	2	0	0	3	0	1	0	3	1
CTCAAGCGGCGTCTTC	alt_2913_fdr	10	8	6	7	8	4	5	4	7	18
CGTTTTGATCGCATAC	alt_2913_fdr	50	64	46	53	64	41	43	38	60	47
CCGTTGCGTTTGTGGA	alt_2913_fdr	0	11	2	2	3	4	2	1	5	1
GCCTCCTAATCTTAGG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCCCATTTCTTCC	alt_2913_fdr	63	38	61	60	33	61	31	63	40	55
AGGACTTCCCAGTTTT	alt_2913_fdr	417	351	529	459	358	375	399	375	401	350
CCAGGTTTTCTCGGTG	alt_2913_fdr	59	62	76	95	65	39	76	55	81	55
CTCCAGATCGTTAATT	alt_2913_fdr	30	23	27	22	23	21	19	15	13	30
TCGATTTATCATTCTG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGATAGCGTCCTA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTTATGAGCTCTTGAT	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAGCGCTACCTGA	alt_2913_fdr	29	31	29	38	25	28	18	25	27	27
GGTTCTTGATAGCACC	alt_2913_fdr	26	29	28	32	17	17	23	19	29	20
TAAATCTACGGCTCTC	alt_2913_fdr	37	31	61	51	48	40	34	42	34	44
AGTATTTGTCGTAATG	alt_2913_fdr	11	9	14	6	12	8	16	19	13	14
TGTCTCTAATGCTTTC	alt_2913_fdr	16	2	9	6	6	10	7	4	11	10
AGACCTCCCTCGTTAT	alt_2913_fdr	3	7	3	7	3	6	3	2	7	4
GGTCACCCAACTATCC	alt_2913_fdr	7	4	4	9	5	11	1	4	10	5
ATAACCTATATGTTAG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGCAAAGTTAGCA	alt_2913_fdr	208	183	265	241	164	191	163	162	195	171
ATCAAGGTCCGGCATA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTCGCTATTAAGG	alt_2913_fdr	72	60	84	70	77	82	65	64	74	54
TGTATAAGCGTTACAT	alt_2913_fdr	24	21	27	22	29	27	33	27	24	30
TTAAAACTATTCTTGT	alt_2913_fdr	49	38	88	54	40	58	30	52	49	48
CATTAAGCTCGGTGGT	alt_2913_fdr	41	27	42	35	22	41	39	31	26	31
ACGTGCACATCACTTG	alt_2913_fdr	67	53	80	78	67	51	59	51	66	52
GTCTGTATTGCGACAC	alt_2913_fdr	86	72	80	71	70	91	69	65	47	52
AGGTTACTGCTACGGG	alt_2913_fdr	4	2	5	5	1	2	3	1	3	4
TTAAGAAGCGTTACCC	alt_2913_fdr	14	10	7	5	6	7	9	11	11	9
CACCCCTTAATCCGTA	alt_2913_fdr	5	6	18	7	6	12	11	12	12	9
TGTCATATATTTTGTG	alt_2913_fdr	36	19	36	34	21	33	21	40	36	38
TTGTTAGCTCGTGGTC	alt_2913_fdr	92	91	156	106	106	111	117	110	106	112
TTATCCTTAATGCCGT	alt_2913_fdr	15	1	12	6	10	13	7	20	20	15
CGCGTGGTGGACCGGC	alt_2913_fdr	76	55	99	81	78	96	68	55	77	75
GGGGTAGTCCCGGGAG	alt_2913_fdr	31	28	45	39	32	29	30	39	37	32
ATCCACAGGTCGTCGT	alt_2913_fdr	47	21	36	35	24	32	33	36	25	28
ACAAGCCTGCGATCGG	alt_2913_fdr	15	8	11	8	4	12	16	15	10	10
CATTCTCAATTCACCG	alt_2913_fdr	25	17	25	31	22	18	20	19	18	18
CGAAAGACGCTTTACG	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGTGGCCGATTA	alt_2913_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTTGATCTTACAC	alt_3540_missing	11	17	8	11	17	6	17	9	12	5
TGTATAATCTGGGTCC	alt_3540_missing	2	7	5	4	8	7	4	1	5	3
GGAATTCGAGCCGCGA	alt_3540_missing	16	27	22	11	37	20	21	17	22	21
TCTTTTGCCTCTAAAT	alt_3540_missing	24	57	15	16	56	12	72	3	69	11
CTTTGGCGGTATACGG	alt_3540_missing	29	42	32	16	50	20	47	21	43	18
CTCGCGGGATCGTGAT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TAGTTGGTATTCTTTG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
CCTCATGGGGATCCGT	alt_3540_missing	12	4	6	5	5	8	5	3	1	12
ACCATTCCCTTCGGTT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TTCTTTTAATGCTGAC	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
GAGGTTGGCATATTTA	alt_3540_missing	23	63	48	23	67	24	70	18	76	25
AACTAATTTTATGTAT	alt_3540_missing	1	12	3	3	13	4	7	5	8	5
GACTTACTAGATTGTA	alt_3540_missing	11	24	11	10	16	8	27	10	33	8
AACAACTTAAGGGCAA	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TACTCGATATGCTATG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TCTTCCTCCTTTTAAT	alt_3540_missing	15	15	3	10	17	8	23	12	16	8
TGCGACTATCATCTGC	alt_3540_missing	9	16	6	6	9	4	15	5	22	1
TTTCGCCAATTAAAGA	alt_3540_missing	12	29	21	18	47	17	57	16	33	16
TTTTGCATTCCATCTC	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TCCTAACGGCTTGCTT	alt_3540_missing	4	10	6	7	10	12	20	9	19	7
CTTTAATCGCTGGCAT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TAATTCTACGATGTTT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
CGTCTTCCCTTACAGC	alt_3540_missing	11	16	16	4	28	11	29	12	26	5
TCGTCTCTCATCTTGG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
GGGCTATCCTAAACAT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
CACCTAAATCATTTGC	alt_3540_missing	15	38	21	10	38	12	45	14	47	16
TTTCCCGCTTCGCACT	alt_3540_missing	16	23	7	8	24	11	30	5	27	12
AGTACGATCTAAAGCG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
GGCTCGGTCCCTGTTT	alt_3540_missing	5	9	8	4	9	7	11	8	15	6
TTGGCGTCCCGCCCTT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
AGTTTTCTAGAGACTG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
CGTCTACAACACTTCT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
AGACTGGGCTCAGCAA	alt_3540_missing	15	44	18	11	41	11	32	17	36	10
CCTTCCTGTTCTGGGT	alt_3540_missing	16	50	21	17	51	23	51	21	52	24
AGCTCACGGATAAAAA	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TCCCTGGCACGGTTAG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TGCGTTTTACCGTTAC	alt_3540_missing	9	13	7	14	27	6	37	10	15	8
ACAAAGGGCAACATTA	alt_3540_missing	2	1	4	1	1	0	3	2	4	1
AGACGGAAAATATTCT	alt_3540_missing	11	9	4	5	10	2	9	2	6	8
AGTCCGAATTCATAAG	alt_3540_missing	13	29	14	7	31	5	25	10	33	5
GGCCGTCCTTACAAAA	alt_3540_missing	1	4	3	0	3	1	5	0	4	2
ATCGTATCAGAACGAA	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TAGGATCATTCTTCTA	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TTTCCGTTTATCAACC	alt_3540_missing	37	90	75	46	97	39	107	37	113	43
ATAGAGATAGGCGTCT	alt_3540_missing	3	12	8	2	14	2	8	4	13	7
GTAATTTCACTTGATC	alt_3540_missing	13	27	19	6	25	10	27	21	39	5
TGCATTTTGTTTGCAC	alt_3540_missing	0	4	5	2	2	4	3	0	6	1
GCCTACCTTTGCCGCA	alt_3540_missing	5	21	2	5	18	12	14	5	10	3
GGGACTGCTAGTGTTC	alt_3540_missing	72	153	98	75	129	55	165	69	138	64
TGGTGTGAGGTTTTCC	alt_3540_missing	3	5	1	2	5	9	4	3	2	0
TAAGTGGTATTCGCAC	alt_3540_missing	0	11	4	6	19	8	10	5	4	2
TGCCTCTAAGGCTGAG	alt_3540_missing	37	94	41	24	60	47	66	28	91	46
TGTGTATGGTTCCTTG	alt_3540_missing	3	9	11	11	16	7	30	12	14	5
ACTATGATGAGCATAG	alt_3540_missing	5	11	6	7	13	3	6	6	16	4
CTGGAGTGATCCTTCA	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TCGTACAGTGGCGTTT	alt_3540_missing	1	1	2	4	5	2	5	2	7	2
GGTGTTAACTTCTCAG	alt_3540_missing	7	10	5	2	17	8	22	16	28	7
CCTTTGTTGTAATAGT	alt_3540_missing	17	25	17	10	35	9	43	14	34	11
TGCGCCAGCACGATTA	alt_3540_missing	7	20	8	12	21	5	16	12	18	6
TTACCCGTCATCTCTT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
GCGATTACCAGAGCAA	alt_3540_missing	30	54	38	20	63	30	39	28	61	37
TTACATCAAGCACTGT	alt_3540_missing	5	26	7	6	22	11	14	7	25	5
TAACGCTATTCCGGAT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TGCCTAGTACATTCCC	alt_3540_missing	0	38	1	2	50	1	53	2	36	2
GTCCGGTGCTACGCAT	alt_3540_missing	5	31	7	10	17	7	27	10	31	6
AATCCATGAGACTTCG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
CCTTAGCTTGTTATGC	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
GGTACCGGCATCCGTG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
TCCCGACCTGGCTCGC	alt_3540_missing	34	110	42	42	119	22	112	41	106	42
GGTCAATCCCTCGATC	alt_3540_missing	4	20	12	7	23	11	29	7	29	6
CGTCCATTCTCCGTAA	alt_3540_missing	18	40	35	22	62	18	48	22	58	13
CCCATCTAGAACAGTT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
AAGGCGCTAGTTCCTC	alt_3540_missing	15	69	26	23	63	22	73	18	63	22
ATATGGCCACCATCTG	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
GTTAGATTCCTCATGT	alt_3540_missing	0	0	0	0	0	0	0	0	0	0
CCACCGGCGAGTACGC	alt_5553_upstream	16	4	10	7	7	11	8	10	8	8
TGTCCCTTTGCCCAGG	alt_5553_upstream	151	90	199	155	116	154	109	148	122	140
GCATTTATAGAGTCTA	alt_5553_upstream	35	27	69	54	39	35	29	45	39	41
TACTTAGGCGCTTCCA	alt_5553_upstream	13	9	8	5	5	5	13	9	7	9
CTGCCTATGTGCGTTC	alt_5553_upstream	4	9	3	5	6	2	9	4	3	2
TTTATGGACCGCTATC	alt_5553_upstream	0	8	8	19	11	16	6	13	8	8
CCATTTACCGTGCCAT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCGGGATTTTTGA	alt_5553_upstream	35	28	44	60	32	53	37	44	28	48
GCCAGTATTACACTCG	alt_5553_upstream	8	10	11	10	12	9	11	18	7	5
AGCGGGCATTGGGCCA	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
AATATTGTTATTTGTA	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCTAGGCGTTGTG	alt_5553_upstream	30	21	43	30	25	24	14	28	24	24
ACAATCTGAACAGCAC	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCCACTTCTCCCG	alt_5553_upstream	26	38	39	31	27	41	41	34	44	44
TATGGACAAACTCACG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTCCCATTTTAA	alt_5553_upstream	8	5	21	10	6	7	8	7	9	2
GTCATTTTAGCCTGCA	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTAGACCTTGGAG	alt_5553_upstream	72	64	92	73	58	80	67	69	80	65
GGCTCAGTAGAGCTTT	alt_5553_upstream	64	56	98	69	67	80	53	54	59	57
GCGCCATGGACCTATG	alt_5553_upstream	182	136	222	191	144	196	170	201	147	146
AATGATCACCCTATTG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTTTTGTTTCTG	alt_5553_upstream	74	69	108	78	78	82	69	86	95	71
TAGTGCGAATCATATA	alt_5553_upstream	4	10	9	10	12	10	7	13	7	9
TCTTGGGTCTCCCGTC	alt_5553_upstream	19	20	12	27	18	16	29	15	16	12
ACCAGCGGATAAATTT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GGACCCTGATGTCATC	alt_5553_upstream	17	13	12	12	5	13	9	11	10	8
TGAGTTCACAACAAGC	alt_5553_upstream	4	3	7	5	5	6	6	2	5	0
GGGACACAGCTTCACT	alt_5553_upstream	159	157	227	182	204	167	161	172	171	174
CTTTTTTCTCAGAGGT	alt_5553_upstream	4	6	10	4	4	4	7	7	6	6
TTATTTGATACTTGGC	alt_5553_upstream	36	37	65	47	36	45	48	46	38	53
CGCCATGATACCCACT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCTCATTCCTAGGTTG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTCTGAGGCGCAC	alt_5553_upstream	11	10	14	9	11	15	22	12	11	10
CTTGACGCGAATCTTA	alt_5553_upstream	30	20	23	40	22	26	26	29	25	29
TCTAGTTAATAATGTC	alt_5553_upstream	12	5	12	12	6	6	9	9	13	10
ATGTGTGTTAGGTGTT	alt_5553_upstream	7	5	5	1	1	4	6	6	3	9
CACCAGCATTATTTCC	alt_5553_upstream	32	20	36	37	31	34	29	39	32	33
GGGTCACACGATTGGG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCATTGACAGTTT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGTTCCATTTCAA	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
TAACTCTAGCCGGGCA	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GACCGCATAGCCTGCC	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GCGATCGCGTATAGGG	alt_5553_upstream	10	9	10	6	4	6	4	6	8	8
ATGTCGTTAACGCCTC	alt_5553_upstream	13	10	17	20	3	9	13	24	12	14
GTTTTGATCTAACTTG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GATTGCACCATAGCGT	alt_5553_upstream	34	27	41	40	27	28	44	27	32	26
GTCCTTAGTACCCAAG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTGAAAGGCTAT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCAGACCAATCTGAGG	alt_5553_upstream	8	8	3	6	11	3	12	4	6	4
TTACCATTCGTCAATG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTTTCACACTATA	alt_5553_upstream	17	98	23	16	99	23	104	21	100	23
TGGACCCATACAGTTT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CTATTTCTAGTTCCGC	alt_5553_upstream	3	1	1	3	1	3	2	1	3	2
ATACACCGGACTCTAT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGTACTCTAACCC	alt_5553_upstream	32	34	41	44	34	33	40	41	35	33
GGCCCGGAGGTGGGAA	alt_5553_upstream	10	16	31	22	19	10	9	14	20	12
CTCCGGCCACTCATTT	alt_5553_upstream	46	46	50	49	41	42	51	29	56	43
CATGGCGGGAATTGAG	alt_5553_upstream	4	6	8	4	13	10	3	7	8	7
ACTCTAGGCTGATGAG	alt_5553_upstream	6	9	11	10	10	8	7	8	9	7
TTAGTAACATTTCGCC	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGTGCTATTAGCA	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTGACGTCTGTCT	alt_5553_upstream	23	36	42	39	30	22	33	19	35	22
TGTGATCTTGTACGCT	alt_5553_upstream	5	1	6	5	6	4	2	5	1	2
TCATGACTTTGTTAAA	alt_5553_upstream	16	11	20	13	15	13	4	14	16	8
GCATTTTTCTTTGCTT	alt_5553_upstream	65	41	82	55	41	70	54	48	44	63
GGATCCGAATCTAATT	alt_5553_upstream	187	90	191	188	70	165	66	152	78	145
CGCTATTGTATAGAAG	alt_5553_upstream	46	71	76	58	89	56	97	49	118	43
CGACCGGGTTACAGTC	alt_5553_upstream	0	2	0	0	0	0	0	0	1	0
CTCTGTTCCGTTGGGA	alt_5553_upstream	10	13	12	16	10	17	10	7	8	6
CTTTCCCCCTGCTTAC	alt_5553_upstream	24	20	42	20	19	22	14	17	17	21
AAGCTTCTAGACCGGC	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
CAATAGCCCTTTCTTT	alt_5553_upstream	11	7	11	8	12	1	9	3	9	7
GGACGTTGGGTTACAG	alt_5553_upstream	30	22	35	24	15	36	27	35	22	27
CTTTTCCGCGTTGATG	alt_5553_upstream	58	54	62	52	54	60	50	38	47	42
CGTGCCATCAAATTAC	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GAGCAGTAGCCCGGAA	alt_5553_upstream	2	3	6	4	2	3	4	9	3	5
CCCGATGGAGCGCGCG	alt_5553_upstream	12	12	14	17	15	13	17	16	15	10
TAGTAGATTACGTGAT	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GATAGGTTTTTCGCTG	alt_5553_upstream	20	13	26	15	17	19	19	17	20	16
GTATAATGCCATACTA	alt_5553_upstream	48	38	80	53	37	39	39	51	34	34
GTCCCAGTTACCATAA	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GATCCTTGTTCTCAGC	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCCACGCCCGAGG	alt_5553_upstream	77	73	97	98	76	69	60	91	83	77
GATTTATAGTGTGCGG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
ATACCCCGGACTCTGT	alt_5553_upstream	0	0	0	0	0	0	1	1	0	0
TATTAAGAGGCTCGTG	alt_5553_upstream	27	25	57	53	29	36	26	30	18	26
GGTGAGTAAGGTTATG	alt_5553_upstream	138	94	191	142	120	157	109	173	141	123
GGTCATCGTATCTTTT	alt_5553_upstream	182	140	248	151	134	159	140	164	149	148
CTACGGCTTGGACGCC	alt_5553_upstream	1	0	6	1	3	0	1	0	0	0
TTTCTGTGAAGGTGGG	alt_5553_upstream	14	13	25	21	15	21	13	19	20	21
ATTATCACCAGTGTTA	alt_5553_upstream	2	2	5	2	1	8	3	2	3	4
CATTATGTTTCTTACC	alt_5553_upstream	31	21	27	16	24	14	28	17	26	28
TTCGGCCTTTTAGCAA	alt_5553_upstream	17	15	26	21	17	19	17	20	22	15
GGTCCAGTATGATCAC	alt_5553_upstream	76	57	101	90	60	99	73	85	80	82
ACCTTAACCGTTTATC	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCTCTGCTTCCCG	alt_5553_upstream	0	0	0	0	0	0	0	0	0	0
TTTGAGCCGTAAACGC	alt_5553_upstream	67	61	79	83	65	57	62	67	59	62
ATACCCGTTAAGACCC	alt_5553_upstream	129	83	140	86	69	121	80	81	78	95
TGAATTCGTACCCGTA	ref_5642_new	8	22	16	15	24	8	21	14	23	5
CATTAGTATATCTCGA	ref_5642_new	15	40	18	13	31	18	44	19	35	17
TCCGCAGGGGGCTCCT	ref_5642_new	24	19	20	8	29	12	34	10	42	13
GTAGTCTGCTGACGCC	ref_5642_new	10	30	14	13	33	21	50	12	43	18
TGTGGTTCTTCCTTTC	ref_5642_new	19	37	15	16	28	25	23	12	35	9
CTGTACCTGTTGTTTT	ref_5642_new	0	5	3	0	5	7	5	8	9	1
TAGGCACCGTTCTTGC	ref_5642_new	5	14	13	5	19	6	14	7	18	6
TATTGTCGTATTTCAG	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TTAGCTCATATGCTTC	ref_5642_new	23	52	26	14	74	19	50	24	55	26
GTTTCTACTTTTCTCT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TCTTTGTAAACGGTAA	ref_5642_new	1	3	4	2	7	2	9	3	12	0
GGTCTGTAACGGCTTC	ref_5642_new	36	91	38	39	75	34	87	25	79	30
TGCTCCTGTTACTGTG	ref_5642_new	0	0	0	0	0	0	0	0	0	0
GATGAGAGCTTCTTAT	ref_5642_new	13	23	12	6	19	15	24	8	23	4
TTACCCGGGTCAGTTT	ref_5642_new	1	44	2	1	49	0	55	3	47	3
GTGCATTACGTAATCA	alt_5642_new	7	27	20	20	27	14	29	9	17	8
TTGTTCTGTCTGTTGT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
CAGATTGACTATCGTC	ref_5642_new	0	0	0	0	0	0	0	0	0	0
CTTGTTTCCGACCGAC	ref_5642_new	3	16	3	1	14	3	21	3	17	0
TAAGAGCTTTGTCAAT	ref_5642_new	6	29	13	8	20	13	28	17	19	6
GTTCGATCGCACCCAT	ref_5642_new	16	57	16	8	45	21	28	15	54	8
AGGTGGACGCAGACCG	ref_5642_new	10	32	17	13	22	15	40	10	35	10
CTATAACCCTTGCTGG	alt_5642_new	10	19	11	14	28	8	31	9	33	19
CCGTTATTTTCCTTTG	ref_5642_new	0	0	0	0	0	0	0	0	0	0
CTTCGGCTTAATTAGA	ref_5642_new	6	9	4	5	14	5	10	5	9	1
CTCGACAGAGGGGACC	ref_5642_new	5	13	5	1	14	1	14	3	15	9
TTTAACTGATGTTAAG	ref_5642_new	0	0	0	0	0	0	0	0	0	0
CCATAATATTTACTAC	ref_5642_new	0	0	0	0	0	0	0	0	0	0
ATTGGACCTGTTGGGG	ref_5642_new	13	28	7	2	24	7	21	10	26	8
ACTTTGCGTTAAAGTT	ref_5642_new	1	4	3	1	3	1	0	1	1	0
TATTCCTGCACTCCAA	ref_5642_new	1	1	0	1	0	0	1	1	1	0
CCGTTATTTTCTTTTG	ref_5642_new	132	306	183	135	333	135	320	131	327	113
GGCTTATAATCAAATC	ref_5642_new	3	1	0	0	2	0	3	1	6	1
TTAATCTGTTCGACCA	ref_5642_new	0	0	0	0	0	0	0	0	0	0
AACTGCAGAGAACCTT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TAGCACACGTACGCTC	ref_5642_new	0	7	0	0	5	0	4	0	9	0
CTGAGAGAACAACAAA	ref_5642_new	19	56	18	26	56	24	62	15	75	33
AGCTTGTCCAGTCATA	ref_5642_new	5	26	10	3	24	6	23	7	26	3
GTGTTCCCTTAACACG	ref_5642_new	7	19	13	7	20	6	17	4	21	6
TACTAGTTTACGGCAC	ref_5642_new	3	3	0	0	1	0	2	1	1	0
AGTCGCATACGAGTGT	ref_5642_new	18	24	33	30	19	19	27	28	24	26
TCGTGCGCATGCCCGC	alt_5642_new	18	21	18	20	31	13	35	17	37	8
GGTATTCTGGTGGCTA	ref_5642_new	0	0	0	0	0	0	0	0	0	0
CAACCCGTCAGGGCAT	ref_5642_new	6	22	4	9	25	9	25	5	23	7
TTCTTTAGCAAGCGTA	alt_5642_new	16	25	8	14	23	9	23	7	34	10
GCGTTCTTCGGGTCCC	ref_5642_new	25	65	33	26	68	27	66	27	65	27
ACAGGTCTGTCCATCG	ref_5642_new	27	88	28	18	86	23	78	15	110	18
CATTTAACCGCGCTCG	ref_5642_new	0	0	0	0	0	0	0	0	0	0
GGTATTCAGAGCGCAT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TAGTTCGGAATCGCCA	ref_5642_new	1	7	2	2	7	8	10	5	9	4
TAGATTAGCGAGTTTA	ref_5642_new	0	0	0	0	0	0	0	0	0	0
GTTTAATATTTCGCTG	ref_5642_new	71	168	82	65	156	59	155	71	166	60
ATGTGACTCGAGGCTG	ref_5642_new	0	0	0	0	0	0	0	0	0	0
ACCCTCTCCACGGGAT	ref_5642_new	4	9	0	4	10	3	5	2	9	2
GCAAATCTGTGGATTG	ref_5642_new	18	61	29	21	73	14	54	15	83	23
CTATGGCGGCTTAAGT	ref_5642_new	2	3	1	0	1	1	0	0	2	1
AGCCAGGGATTCTTTT	ref_5642_new	9	38	10	7	36	9	27	15	42	4
TATATCAAGGCAGCTC	ref_5642_new	10	29	8	7	41	21	32	10	31	11
AGTCCTCGGGTACGGC	ref_5642_new	14	25	11	8	31	11	27	7	42	7
CTGGACAGGTGCTTAT	ref_5642_new	13	71	27	10	50	15	54	12	76	28
GCACGGAAACATAACC	ref_5642_new	25	63	33	20	62	25	49	16	65	14
GTCTTGCTTGGATTGG	ref_5642_new	4	7	8	4	9	12	11	3	11	8
TGCATGTCGTCCGCTC	ref_5642_new	0	0	0	0	1	0	0	0	0	0
TTGCGATTAATACACG	ref_5642_new	13	36	12	16	32	8	33	6	36	3
TTTAGTGCCAGCTAGC	ref_5642_new	0	0	0	0	0	0	0	0	0	0
GCGAGGTGGTTACCGT	ref_5642_new	4	11	2	1	5	2	6	2	4	1
TTACTGACAAGAGTTC	ref_5642_new	4	3	3	0	2	1	8	1	4	1
TCGTTTAGTTTAGCTT	ref_5642_new	3	5	4	1	7	4	8	4	12	4
TGTCCTGTAAAAGTAC	ref_5642_new	0	0	0	0	0	0	0	0	0	0
GGTCTCGGTCGGAGAG	ref_5642_new	17	75	11	16	72	12	70	7	68	18
AGTAATACTTCTCGGA	alt_5642_new	44	73	42	42	90	27	94	32	98	40
TCCCCCGTTCTCGTAT	ref_5642_new	8	14	7	3	23	3	25	7	38	3
GTCTGTGTGTTTCCCA	ref_5642_new	54	135	56	52	134	44	126	25	143	44
GTGCTTATTATGCTTT	ref_5642_new	5	7	7	7	15	6	10	3	6	6
GTGCATGATGTTTCGC	ref_5642_new	27	52	34	21	41	21	46	18	40	17
ATGTGCTATATGCTAA	ref_5642_new	2	11	8	1	9	3	8	2	4	8
ACTTTTTTGGTGGGAA	ref_5642_new	44	113	53	35	113	33	132	36	125	41
GTCCCGGTCGGCGAAA	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TAGCTCGAGTCTCCCG	ref_5642_new	43	97	33	35	112	33	113	39	117	34
CTATAACAATTCGCTT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TGGACGGCTTTCTCGT	ref_5642_new	10	22	19	15	26	12	23	16	27	7
CTGGTTCGCGTCACTT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TTAATTGGGCCTCGGT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TTTATGGGGCGTCCTA	ref_5642_new	26	57	26	27	81	33	81	34	79	28
GATGGCATCCACTGCG	ref_5642_new	26	78	36	26	74	24	62	53	87	29
ACGCCTCTTACTCACT	ref_5642_new	37	90	46	32	75	26	114	31	82	18
TTACCAGACTATGCGG	ref_5642_new	0	0	0	0	0	0	0	0	0	0
TTGTGCTGTTAAACCA	ref_5642_new	6	18	10	16	14	11	17	6	17	9
GTATTCGGCGGCGTAG	ref_5642_new	6	3	5	3	8	4	7	4	5	3
TTGCTATTCAGTACGT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
CTAATGGGAATCATGG	alt_5642_new	0	0	0	0	0	0	0	0	0	0
ATCCGTGCATAACTAG	ref_5642_new	28	80	41	35	85	28	65	17	66	15
GACCTTAAAAGTGAAT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
GTCTCTAACGGTCACA	ref_5642_new	19	71	27	22	68	24	76	16	69	23
GAAGTGTTGCATCCTC	ref_5642_new	24	23	22	16	33	17	50	23	53	14
TTCCCATTACTGTATA	alt_5642_new	14	32	23	16	45	19	34	14	28	12
TTTCGGTTGCATGAAG	ref_5642_new	17	58	29	20	62	16	63	25	58	16
AGGAAGCGGCAGATAC	ref_5642_new	35	57	36	14	59	24	51	23	56	21
AACTACTAATTATCTG	ref_5642_new	16	49	29	15	48	22	60	21	63	23
GTGATTTAAATACCCT	ref_5642_new	0	0	0	0	0	0	0	0	0	0
CCACTACCCTCCAGCG	alt_6014_new	206	340	254	209	334	229	396	206	419	194
GTTCGTCTGGGATTAA	alt_6014_new	22	30	24	28	54	29	43	24	40	24
TCGTCACTAGCTACAC	alt_6014_new	38	96	64	36	85	39	111	56	109	49
GAGACCTAACTGGAAA	alt_6014_new	10	15	14	12	13	8	13	7	10	4
AGGTCAAGCCTTAAAT	alt_6014_new	3	7	1	2	10	3	6	4	6	1
GGGTTTACTTTGGTGT	alt_6014_new	15	23	15	21	33	6	30	13	35	16
TTCACCCGCTATAAAT	alt_6014_new	43	91	38	47	77	40	101	30	85	23
CATAGCAGTCATACTC	alt_6014_new	36	60	34	22	44	30	61	21	58	24
CTCCGTAACGAACAAG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
CGGTGTGACCACTTTT	alt_6014_new	0	0	0	0	0	0	0	0	0	0
ATCTGATGTGGTCGAG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
TAATAAAGCGTACATT	alt_6014_new	5	6	7	7	10	3	5	3	7	2
TCGGTCCAGTACTTTG	alt_6014_new	57	117	62	39	81	56	99	50	131	42
CGTCCCCCTTGTAAGA	alt_6014_new	10	17	16	7	6	11	13	9	14	16
TTCACGTGAGGTGGCT	alt_6014_new	1	5	3	4	2	0	5	2	4	1
ACTTTGGTTGGTCTGG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
ATGTTGTCTTCGTTCG	alt_6014_new	18	17	19	17	26	23	28	13	21	16
AAAGTTGGTTTTGCCC	alt_6014_new	2	6	8	3	1	5	10	1	5	0
GGTGGTCCGCGTTTCG	alt_6014_new	26	55	38	39	44	30	69	30	58	22
CTCGAGATGTCGCCCA	alt_6014_new	10	19	25	22	15	15	14	12	21	19
TGATCATTTGTCTCCG	alt_6014_new	8	10	12	9	13	7	13	6	8	9
AAATGACCTTACTACC	alt_6014_new	0	0	0	0	0	0	0	0	0	0
AGTGTTCTAGCTGTAT	alt_6014_new	38	98	54	67	92	55	113	58	123	62
TGTATGTGGGTCTATT	alt_6014_new	50	93	45	45	78	30	91	45	68	44
TGTGTGTCACCTTCAC	alt_6014_new	1	0	6	0	3	2	5	0	1	0
TGGTCTCGTGCCTATC	alt_6014_new	12	23	15	14	28	16	23	8	21	9
CATCTATTCCCGTTTC	alt_6014_new	61	103	73	34	81	38	83	54	82	42
TGATGCGCTCTCCCAC	alt_6014_new	8	14	4	7	10	7	13	2	17	5
AGGTGCGGTCATCTAG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
GGACGTCATTTTTAGG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
TGTGTTACTAGAGTCT	alt_6014_new	5	10	8	7	18	6	16	7	20	10
GACAGTCATTAGATCC	alt_6014_new	0	0	0	0	0	0	0	0	0	0
CTTCTGTTTAGTGTTT	alt_6014_new	30	66	29	28	66	26	59	28	72	26
ACTAGTAATTCCTCTC	alt_6014_new	0	0	0	0	0	0	0	0	0	0
GAAACGGTTGGGCTAG	alt_6014_new	1	6	8	2	7	3	5	1	5	6
AACAGTAGCGCGGCGG	alt_6014_new	14	7	5	5	13	6	12	4	10	9
TTTAACGGTCTGCGGG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
TCAGTTCGTCAATACG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
TGGTAACTTCTCCGTC	alt_6014_new	6	8	8	3	12	4	13	7	9	3
CGAAGGTGCCTACGGT	alt_6014_new	16	26	34	21	30	15	29	14	44	21
GAAGGTATACCCTGTT	alt_6014_new	29	57	37	38	52	24	50	22	57	32
CGGTAAACTATTCTTG	alt_6014_new	7	13	3	4	9	2	15	0	10	1
GCCTTTCAAGGTACAA	alt_6014_new	25	41	28	26	42	17	36	16	38	13
CCTCTATTTTTCGGCT	alt_6014_new	0	0	0	0	0	0	0	0	0	0
TGCCCTGTGTTCGGCT	alt_6014_new	23	41	29	25	48	26	53	16	48	22
CAGGGCTAATGTCGCG	alt_6014_new	27	52	29	15	34	14	35	19	34	23
TTTTCTGTACTGTTTT	alt_6014_new	6	11	9	4	4	6	9	7	13	2
ACTAATTCTCAGCTCT	alt_6014_new	0	0	0	0	0	0	0	0	0	0
GAGCCGCTATCCGTCG	alt_6014_new	1	1	0	1	0	1	3	2	1	3
GCTATGTATCGTCGTC	alt_6014_new	33	95	52	40	66	40	69	37	96	28
CTTAACTGCTCTCTTT	alt_6014_new	39	55	46	30	44	35	44	28	47	35
ATCTGCACGCTGCGTC	alt_6014_new	38	60	58	30	58	48	64	44	82	47
CGGGAGTGCTTGCCTT	alt_6014_new	37	84	46	44	79	45	83	43	88	39
CTATGCGTCGTGGAGA	alt_6014_new	7	12	6	5	12	4	3	4	17	4
GCACATCGTCTGCTTA	alt_6014_new	7	4	1	9	8	8	7	0	7	4
ACATTGATTCCTAGTA	alt_6014_new	20	20	9	15	19	6	20	8	29	8
TTACCGGTGACATTTT	alt_6014_new	0	0	0	0	0	0	0	0	0	0
ACTCCTATACCTAATT	alt_6014_new	29	57	26	24	52	27	46	25	57	33
GATTCGTGATATTAGT	alt_6014_new	2	13	10	6	8	2	13	9	16	1
TTTCACTCATGTGGGG	alt_6014_new	0	0	0	0	0	0	0	0	0	0
CGCCATGATCGGCTAA	alt_6014_new	11	7	17	11	17	8	20	16	13	10
AAGGACTTTCTGACGC	alt_6014_new	31	38	26	15	44	24	41	31	49	29
GTATGAGTTGGGACAT	alt_5061_upstream	15	46	41	32	34	34	52	18	45	25
GCCGTTCGGCCGGGCA	alt_5061_upstream	29	65	36	45	74	28	85	46	73	46
GTCATTTGGGTACCCC	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
TCATGCCGTGGACGTG	ref_5061_upstream	122	155	127	130	145	128	137	116	175	117
AAGTCCTAACTATTTC	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCGTGGATGTTCT	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
GTTGAGCTACGTCGTG	alt_5061_upstream	6	6	7	3	5	7	8	8	2	5
AGCTTAGGAAGACTGT	alt_5061_upstream	13	61	10	3	34	8	41	8	38	13
TACTCCCCTTTGCATT	alt_5061_upstream	1	8	0	1	5	3	1	1	6	0
AGCCATTTGGTATTTT	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
CCCGACGTTTCCTAAG	alt_5061_upstream	12	31	13	10	21	4	19	1	26	8
GTCTGGGTAACATGTA	alt_5061_upstream	34	44	32	42	38	21	43	25	45	36
GTTCGAATCAGCGGGG	alt_5061_upstream	44	43	45	51	30	34	50	43	54	33
TGTATATTCTAACAAC	alt_5061_upstream	10	16	17	13	17	14	19	10	18	11
TGCCATTTGGTATTTT	ref_5061_upstream	461	677	551	502	725	459	780	458	745	437
GTACCAAAGACTGTGC	alt_5061_upstream	1	2	0	1	1	0	0	0	0	0
GTCTAAGTTCATATGT	alt_5061_upstream	80	94	85	68	101	66	91	70	88	71
ATGCAAAAGTCCTCGT	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
GACTAAAACTTTTTGT	alt_5061_upstream	64	61	62	55	61	40	79	56	72	45
CACGTGTAAAGAGATT	alt_5061_upstream	6	10	11	1	11	4	14	8	12	1
TGTCGGGATTTGGGCG	alt_5061_upstream	63	79	83	48	92	68	91	51	84	59
TAGGGAACATAGTAAT	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCCCCGGAATGCT	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
TCTATGACAACTTCAC	alt_5061_upstream	9	19	12	10	5	3	21	11	9	6
AATACATTTGATCGAG	alt_5061_upstream	46	38	41	52	45	24	53	36	41	28
GACTTCAACCTGAAGT	alt_5061_upstream	13	16	18	13	18	5	19	9	16	11
TGCCATATGGTATTTT	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTTCGATTTGTGG	alt_5061_upstream	44	40	36	22	40	31	37	20	31	32
TTTCCCCAATTGGTCG	alt_5061_upstream	11	29	23	18	29	8	30	24	23	19
CATTAGGGGGATTACA	ref_5061_upstream	83	151	121	113	172	97	183	120	175	112
TGAGCTATTACGTTTC	alt_5061_upstream	43	66	50	50	61	48	72	41	65	38
TCGTTTGTCGATTAAC	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
AATCTCCTCACAGTGT	alt_5061_upstream	15	19	4	6	14	8	31	8	18	8
TGTTGATTTCCACAAC	alt_5061_upstream	4	8	2	1	8	14	7	1	7	3
AATTCACCGACGTTGA	alt_5061_upstream	27	28	32	24	31	25	28	21	49	18
TTATCGTCCCTTCGCA	alt_5061_upstream	66	112	67	58	102	61	106	52	100	46
TTCACATGTGTTCGGG	alt_5061_upstream	14	15	18	12	24	16	22	19	15	10
GTTGGCCAGTTTATAT	alt_5061_upstream	0	0	0	0	0	0	0	0	0	0
AACTCAGGGGGATTGT	alt_5061_upstream	30	45	38	36	42	23	44	32	29	27
ATGCCAAGTCCTCTGG	alt_5820_new	27	33	33	32	49	28	46	19	61	26
TCCGAATGCCAAAATA	alt_5820_new	35	47	57	43	53	41	61	28	59	35
ACTGTGTTCTTCACCA	alt_5820_new	0	0	0	0	0	0	0	0	0	0
CTATCCCTTGATATAA	alt_5820_new	18	30	21	15	23	10	16	14	35	19
ATAGTTCTCGCTTTAT	alt_5820_new	17	21	20	15	18	13	26	18	15	16
TTAGAGCGGAGTCCAG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
ATAAGGTCTTGGACGA	alt_5820_new	11	18	10	5	13	5	8	6	14	3
TGATCTGACGCTGGGA	alt_5820_new	58	65	60	44	82	49	72	49	60	45
TATAACTTAGCGTTCG	alt_5820_new	10	25	11	9	30	7	35	21	22	10
ATTGTAGTAACGTGGT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
TGCGATCCGTTAAGAC	alt_5820_new	31	47	25	29	47	33	46	27	52	29
TTTTGTACGCTACTCC	alt_5820_new	0	0	0	0	0	0	0	0	0	0
AACGCGCAGACCTGGA	alt_5820_new	2	2	4	7	4	6	6	2	1	1
CTAGATTTCTATCGAG	ref_5820_new	5	22	20	8	19	18	24	9	25	14
GTCTATCCTATTTGTC	alt_5820_new	14	19	9	8	10	8	16	7	17	8
TAACGTGTTCTACTTA	alt_5820_new	48	82	49	63	65	44	81	47	94	43
ACAATTGTATGTAAGA	alt_5820_new	0	0	0	0	0	0	0	0	0	0
TTCGCAGGTGGCTTTC	alt_5820_new	8	19	11	11	22	6	17	9	21	10
CAGTGCGTCGCGCGGT	alt_5820_new	1	3	3	3	5	2	6	7	9	2
TAATCCCTAGGCTTTA	alt_5820_new	0	0	0	0	0	0	0	0	0	0
CATGCACACTAGGGGG	alt_5820_new	5	4	11	4	12	6	14	4	7	2
GCTCGTCGCGGTTAAT	alt_5820_new	21	19	21	18	36	22	40	24	47	20
CGTGAGAATAACTGGG	alt_5820_new	20	47	28	26	39	30	35	15	41	19
ATTTAGCGCGGCCCTC	alt_5820_new	56	85	74	54	89	45	108	42	88	72
ATCAAACAGCTTTAAT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
CGACTATGAAAGGCCA	alt_5820_new	2	8	5	3	6	4	2	2	10	4
TAACGGGCTTTAGTGT	alt_5820_new	4	6	7	2	6	12	13	4	11	8
GCTTCTATCTTTGGGC	alt_5820_new	8	10	4	4	3	4	9	4	7	4
ATGTGTAACACGGGCG	alt_5820_new	14	40	24	25	34	13	44	6	32	20
TGCATCATTCTGTAAG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
TGGGATTATAATCTAA	alt_5820_new	207	362	257	212	367	233	360	188	383	194
CCTTTCTCCTTCCGGT	alt_5820_new	165	236	190	139	261	131	247	147	248	117
TTCCCCACAATGCGAG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GACTTATTATTAACAA	alt_5820_new	7	4	5	11	15	7	14	3	12	3
CGACTCACTGTTTTTT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
TCCATGCCGGGCCCGA	alt_5820_new	14	13	10	12	9	6	14	11	14	7
GACATGGGGATGGCGC	alt_5820_new	0	0	0	0	0	0	0	0	0	0
ATAATGCCAACAGCTT	alt_5820_new	17	15	27	8	23	14	17	6	27	12
TCCCGAACTCACAATT	alt_5820_new	29	59	29	27	55	25	55	17	71	16
CTCGGTTTATTAAACA	alt_5820_new	21	38	15	24	46	26	48	25	47	20
GGGAGTATCACAACGG	alt_5820_new	9	14	21	9	26	21	14	15	18	14
GAACGAGGCTACACAT	alt_5820_new	12	19	10	11	17	9	15	11	15	8
TACATCTAGAGCTCGC	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GTACTCTACCGTTTAT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
CCACTTGAGCAGTACT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
CAGTTAGTGTGCCTCC	alt_5820_new	34	53	56	53	71	40	77	42	80	35
TGGGAGTGTCTGGCCT	alt_5820_new	20	25	16	18	33	16	31	17	27	15
CAGATGACTCAGCAAG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
CATTTCGTGGTTTAGT	alt_5820_new	10	24	16	9	24	11	17	7	11	6
TCTACCTGTATGCTCC	alt_5820_new	33	51	31	23	49	37	54	19	73	26
CATACGTGCTTCTCCA	alt_5820_new	60	86	46	53	107	71	106	63	117	49
GGAGTATCGATGCCGA	alt_5820_new	0	10	6	7	9	9	11	7	5	1
GCGTTAGGAAGTACTG	alt_5820_new	12	22	6	14	19	8	31	7	16	8
GGTCCTGCCTAAAGGG	alt_5820_new	11	22	8	5	8	6	10	10	13	3
CCCGCGGTACTTCACC	alt_5820_new	3	11	3	4	5	5	14	6	15	3
CCATGAGTTTGTGCCG	alt_5820_new	144	198	168	122	222	133	200	98	243	125
TCCGATTCTTCACGTC	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GGGGCCGTCTGGGCGA	alt_5820_new	17	14	20	17	26	23	28	17	29	14
ACCCCCGCCCCACGGT	alt_5820_new	15	28	28	10	24	20	40	6	14	10
AACGCCGAAGCTTCAT	alt_5820_new	5	8	0	6	4	4	5	1	3	1
TGCGTCTGCCACAAAC	alt_5820_new	8	14	26	17	20	11	18	15	17	20
ACACGGTATTGTGAGT	alt_5820_new	85	130	107	86	145	73	164	79	165	88
GAGTCTTTGCAGGCCT	alt_5820_new	6	15	7	2	11	5	11	5	16	7
TCAAGCATACGAGTTG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GTGTTATGGTGCATGC	alt_5820_new	0	0	0	0	0	0	1	0	0	0
TTCAAACTGAACTTAT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GTACTGCGGTGGAGCT	alt_5820_new	36	61	50	25	78	26	68	47	64	30
CCCTCGTGCTATTATT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GTCGTCGCCGAGGCGT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
TAGATCGGGTAATGTT	alt_5820_new	8	12	8	5	7	7	17	5	18	6
TCCTTATAGATGGTAA	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GCTATGATGACTCCGA	alt_5820_new	17	23	25	24	13	17	13	15	23	12
TGTCTTCGTTCTTTAT	alt_5820_new	7	19	3	16	21	11	19	11	18	6
CTCGCAATGCAGGTAC	alt_5820_new	11	9	10	11	7	4	15	8	2	5
TAGGCACGCTCGATGG	alt_5820_new	23	58	33	18	47	18	40	22	56	14
TATACCGCCATATCAG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
ATGAATGAAGCACGTG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GTCCTGATCCGACATT	alt_5820_new	21	34	21	15	32	17	33	17	26	17
TACGCGCCTTTTCAAC	alt_5820_new	0	0	0	0	0	0	0	0	0	0
CCATAGGTAGTGTTCC	alt_5820_new	30	60	61	42	78	41	68	34	77	24
CAGGGGGATACAGTGG	alt_5820_new	60	114	57	53	126	39	114	55	152	47
GACCCCCACGTGTACT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
TTATAACGTTGTCCTC	alt_5820_new	13	14	12	5	24	8	19	8	11	8
TTGAGCCCTCTTATCC	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GGGGTTAGTGAAGTGC	alt_5820_new	12	22	25	11	37	9	26	23	23	14
TGGTCGGTTCATTGCA	alt_5820_new	4	8	9	9	7	6	6	4	9	2
GTTGTTCTTAAAAAAC	alt_5820_new	6	12	7	7	7	4	17	4	6	6
TCGGATCTTGCCAGTA	alt_5820_new	43	71	39	52	65	58	86	47	87	31
TCCTATTAAGTAAGCA	alt_5820_new	47	70	29	25	74	47	75	22	77	50
GCTAATCCTGCAGTTT	alt_5820_new	5	9	8	7	19	5	7	5	12	5
CATCGCCTCATCTCCC	alt_5820_new	39	72	60	42	63	47	79	37	61	38
TACCGCTTTCGCACGA	alt_5820_new	16	24	19	22	21	14	31	16	28	15
AACGCGCTTCATTGCG	alt_5820_new	30	57	37	34	55	35	62	37	51	20
TCCCCATTCTATCTCT	alt_5820_new	31	70	25	33	76	27	50	24	76	19
CTTCCGTTATTCATGG	alt_5820_new	12	10	26	9	20	15	18	9	18	15
TGTAGTTTGCCAGTTT	alt_5820_new	30	40	38	23	46	26	28	27	53	23
CTTATCTTTACGGACC	alt_5820_new	40	63	48	40	65	32	77	38	72	33
CGCCGGTAGGTTTTTT	alt_5820_new	9	11	6	4	9	6	10	6	11	2
TCTTGCCTACTCTCAT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GCAATCTTTTAGGTGT	alt_5820_new	41	55	40	32	58	36	69	35	65	40
CCACTTCGGAATTCCT	alt_5820_new	8	7	8	9	18	8	10	11	11	4
TCGAAACTAATGTTTT	alt_5820_new	23	26	32	21	30	28	36	21	37	19
CCTTGGGAACTTCATT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
GGTACATTTCATCCAG	alt_5820_new	3	2	1	2	0	1	1	0	4	1
GTTGTGAGTTCAGTGG	alt_5820_new	3	15	3	8	11	0	4	3	7	2
AACCAGCAAAATTCGG	alt_5820_new	0	0	0	0	0	0	0	0	0	0
TGGGTATATCCGAACC	alt_5820_new	5	6	4	2	8	9	13	5	5	2
GGTTCGTCCTACTTGT	alt_5820_new	32	33	28	23	52	29	51	18	50	26
GGCATCGACTCCCGGC	alt_5820_new	0	0	0	0	0	0	0	0	0	0
ACCTTCGGCACGCGGT	alt_5820_new	0	0	0	0	0	0	0	0	0	0
AGTGGCTAATTATGGT	alt_5820_new	1	4	3	3	4	7	7	1	5	1
TTCCATGTCAGTTCCG	alt_5820_new	2	3	0	2	2	0	3	3	1	0
ACGTCTGTTACATCAA	alt_5820_new	13	16	11	9	18	10	26	6	21	4
CGGCATACGCTAGATT	ref_2134_reverse	23	33	34	28	18	20	18	14	19	19
GGCGGGACCGGTCTAC	alt_2134_reverse	59	51	86	62	57	70	42	62	62	60
AGTAGAGTTACATGTT	alt_2134_reverse	70	63	73	68	63	66	77	86	52	50
TTTATCCATACACGTC	alt_2134_reverse	47	26	58	35	41	23	43	41	40	45
GACTGTCTTAAAACTT	alt_2134_reverse	114	101	164	141	141	139	162	127	161	140
GTTGGCAAAAATATCA	alt_2134_reverse	44	43	51	51	46	48	48	60	44	56
GCCGTCTTCTTAGCTA	alt_2134_reverse	20	29	22	22	18	26	18	18	27	18
TTCTTTCTGAGCGGGC	alt_2134_reverse	48	39	49	60	39	43	51	47	51	37
GCGCGACCTACGGTGA	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
CTACGATTCCCACTTC	alt_2134_reverse	76	91	100	104	119	74	82	80	103	72
TGTATTACTTGAAGTT	alt_2134_reverse	441	409	492	444	405	468	390	410	422	397
TTCCTATCGCATCGCT	alt_2134_reverse	45	54	54	54	43	42	57	48	63	32
GAGATGTGTCCGGAGC	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTACAGACCAGG	alt_2134_reverse	13	13	16	16	10	11	18	7	34	11
GTCTTGCGTTCGACAT	alt_2134_reverse	12	15	27	22	16	19	15	24	17	25
TTCTGGCCATAGTAAT	alt_2134_reverse	3	4	5	2	3	3	4	2	4	1
TAAGTTTTTAATTCCC	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
AGTCAAGTCGCACAGA	alt_2134_reverse	62	60	78	64	71	56	69	67	66	70
CTCCACATAGATTCGT	alt_2134_reverse	16	35	23	40	38	26	44	21	44	14
CGTCATTTGTGGTACT	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTTTGGGTTCGCT	alt_2134_reverse	132	158	171	152	135	127	149	138	152	130
TAGATACTTTGTCACT	alt_2134_reverse	25	19	21	30	18	25	21	22	17	15
AATTCTCAACCGAGTT	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
AGATCAGCTGTCTTAT	alt_2134_reverse	80	65	89	78	76	85	64	60	74	65
ACGTGTTAAGGTCTCC	alt_2134_reverse	13	12	13	17	14	12	8	21	18	16
CTTCTGGTTCGTGTTC	alt_2134_reverse	57	84	91	81	96	62	95	100	98	70
GCTTTAGCAATTTGTT	alt_2134_reverse	108	86	117	115	87	101	113	116	117	96
CCTAGGAAACTAGAAT	alt_2134_reverse	5	2	8	7	2	7	1	5	6	7
CGGTGCGATTAGCCTG	alt_2134_reverse	41	63	66	44	57	54	62	65	51	30
GAGCCTTTTTGTAGAC	alt_2134_reverse	33	28	29	31	38	34	40	23	41	26
GATTCCCGCTTATTAC	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGATGAACTGATT	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGGTTCGCACTTA	alt_2134_reverse	60	87	80	54	107	74	107	51	84	59
TGTCAACTCACTATTT	alt_2134_reverse	13	17	20	11	13	13	9	18	15	15
AATCATGTTGCCGCCT	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
CTATCGTTTCGCCTAA	alt_2134_reverse	8	25	12	16	29	13	25	20	20	14
TGCCCAAGATTCGGTC	alt_2134_reverse	86	81	96	107	79	95	81	94	90	112
CCAAGCTGTATGATGG	alt_2134_reverse	23	24	28	12	19	18	13	30	20	18
ATAATGTTGGGTACGG	alt_2134_reverse	19	18	25	26	19	22	15	16	13	16
ATTTGTTTCTCAGCGT	alt_2134_reverse	17	17	17	13	13	15	11	12	9	22
TTTGCTGTATCTAGTA	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
GCCACGAATGTTCGTT	alt_2134_reverse	49	44	34	48	52	45	60	29	69	31
ACGATACCCGTGCGCT	alt_2134_reverse	26	21	47	23	19	32	24	25	27	23
GCCGAAAGTTTCCTGG	alt_2134_reverse	20	16	31	23	24	19	24	21	24	22
CAAGTTCCGTCCACCG	alt_2134_reverse	46	36	48	49	60	46	61	32	52	39
TACTAGATTCTAGTTA	alt_2134_reverse	105	101	127	128	123	115	93	113	108	91
TGTTGCACCAGTGCTA	alt_2134_reverse	8	20	18	20	10	17	16	15	15	18
ATCGGCCAGGTGTCTG	alt_2134_reverse	10	9	13	16	17	7	4	18	12	14
CACCAGTAGGCGTACC	alt_2134_reverse	16	23	24	17	23	10	34	10	26	7
CCTGGTAAACACAATA	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTTTGGTTTACTA	alt_2134_reverse	58	47	76	67	82	44	59	53	50	61
TTCTTTTGAGGCTCTT	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTTGGGGGTTGAC	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
TAACCCGAAAGCTTCT	alt_2134_reverse	6	4	17	8	13	12	8	8	18	11
TTCGCTTAGCATTCGG	alt_2134_reverse	63	62	60	75	45	38	51	59	49	51
CAGCCGTATGGCAGAT	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGGAAACGTAGAT	alt_2134_reverse	75	56	76	49	74	63	66	50	68	53
TGCCCTGCAATTTTTC	alt_2134_reverse	21	13	12	10	16	6	14	17	15	11
TAACCGAGGCTCATAA	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
TTATGATTTTTTTCTC	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
TTCAAACATATAGGTG	alt_2134_reverse	15	10	25	30	23	29	23	18	15	18
GCTTATCGTTGCCTTG	alt_2134_reverse	46	38	58	38	52	51	55	45	56	57
CTTGATGACAGGCGTA	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGGCTCTTTCCCT	alt_2134_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGGATTGGTGCCT	alt_2134_reverse	127	138	153	148	118	152	136	141	133	100
GATTCTTTCATTAGCG	alt_2134_reverse	42	38	37	46	43	51	45	43	47	35
TTCCGGATGTTTAGTC	ref_2047_RC	7	9	7	5	10	7	5	4	12	9
AGCGGTTACGTCCAGT	ref_2047_RC	22	30	23	19	26	20	19	16	18	19
AAAATACCAGTACTAG	ref_2047_RC	5	7	5	3	6	4	13	8	12	4
CGGTCCACTCAGTGCT	ref_2047_RC	4	12	3	8	14	9	15	2	15	4
GCGGCATATATCCTGG	ref_2047_RC	137	157	148	127	161	110	166	113	172	110
TGGATCAGCCGGTACT	ref_2047_RC	19	30	21	18	27	13	29	11	26	12
GCTACGATATAAAGTA	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
GCCGTTTCGTAGTTCA	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
TAAAGTTTTATGATCG	ref_2047_RC	7	15	7	5	11	8	17	3	15	8
CTAAATTTGTACGACG	ref_2047_RC	2	3	0	1	0	0	0	4	1	1
AGGTCTCAGGCAGAGT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
CTGTAGCCTTAGCCTG	ref_2047_RC	10	17	9	10	26	7	18	8	13	5
TGGTGCCTTTGCAACA	ref_2047_RC	223	366	329	277	442	250	446	245	440	232
TTAGCCGATGTCCATT	ref_2047_RC	96	165	83	82	169	70	160	66	185	76
TTTAGTTCGATGAGCA	ref_2047_RC	93	115	98	81	143	90	151	70	153	69
ATTAGCCCCAGAATTT	ref_2047_RC	27	32	35	37	29	15	41	23	35	28
ACTTGCGATAAGTGTT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
GGCTCATGTTGTGGAT	ref_2047_RC	11	6	9	5	8	9	9	3	11	6
CGTCCAAATTGATCAT	ref_2047_RC	3	7	1	0	6	0	6	4	9	2
TGCCGCCGCAGGTATC	ref_2047_RC	9	23	7	15	12	19	14	15	14	12
AGTCTAGAACAGTTGA	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
TTTTGGTTCGCACTGG	ref_2047_RC	57	86	60	63	68	63	86	47	106	56
CTAAAGTGATTGTCGA	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
ATCTCGTACCGTCGGT	ref_2047_RC	5	46	17	13	39	12	29	12	27	12
GGTTGACATCACGTTT	ref_2047_RC	22	35	30	38	50	23	58	21	60	24
ATGCTAAACATCGTAT	ref_2047_RC	48	55	44	50	56	33	48	31	83	35
CACTATCATTTTGTAT	ref_2047_RC	56	64	60	47	69	50	54	46	59	41
CATATTGAACCTTTGC	ref_2047_RC	54	91	93	64	105	64	107	51	123	61
AAAGAATATCCGCAAC	ref_2047_RC	2	5	5	4	6	0	3	1	1	4
CATGAGGTGGGTGGCT	ref_2047_RC	30	33	31	31	52	25	52	29	50	41
ATCGGTAAGCATTAGT	ref_2047_RC	25	32	24	17	34	9	32	14	35	31
TGTGACCCAATCTGGA	ref_2047_RC	36	47	59	40	46	47	62	31	73	41
GCTACTATCCGGTATT	ref_2047_RC	4	17	5	7	20	9	18	8	25	5
CTCGCTCTACTGTGAT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTCGACCTTTTT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
GGGCAAATAGAGTATT	ref_2047_RC	37	46	44	54	69	44	74	53	75	30
GACTCGCTGAGTCCCT	ref_2047_RC	38	41	36	33	47	22	46	32	32	37
CTGTCAGTTCCAATGA	ref_2047_RC	35	36	36	33	64	16	50	42	60	40
GAATAAAGACTCTATT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CCGCATGTACTTATTC	ref_2047_RC	24	34	37	20	37	36	38	29	46	24
CGTTTTTACCAGACAC	ref_2047_RC	52	63	54	47	62	45	59	47	51	56
GTCCGTAGGTCTGGTC	ref_2047_RC	5	5	4	10	10	3	4	1	12	8
CCATCTACCATACATT	ref_2047_RC	25	44	47	34	60	34	40	29	42	17
TCACTAGGCCATGAAA	alt_2047_RC	16	37	33	30	32	25	26	14	27	21
CTAACAACAGGCTTTG	ref_2047_RC	20	53	31	28	54	19	50	21	60	13
GTTCCTTGTACTACTG	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
AGGCATCATTATCTCG	ref_2047_RC	1	2	1	1	6	3	2	0	2	1
GGCGGCTTGGAGGCAT	ref_2047_RC	1	2	4	2	4	1	4	2	3	1
ACCCGGAGGTCGGAAC	ref_2047_RC	58	77	69	55	88	62	86	60	69	46
ACGTATGTGGTTAATG	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
CTCATCTTGTTGGGTT	ref_2047_RC	60	76	56	43	72	48	74	34	76	48
TGAATTCAGAGGTGCC	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
CTTTCTCGTTCTATGC	ref_2047_RC	23	34	26	8	34	13	33	9	22	14
CACTCTGCCACCTGTC	ref_2047_RC	31	123	42	26	122	24	108	20	121	23
TGAGCGACGCAGTGGC	ref_2047_RC	6	10	10	7	11	5	11	4	9	10
GTATAAGTTACGCGAC	ref_2047_RC	29	50	44	31	52	27	52	34	59	34
ATAGCAATGCAACGTC	ref_2047_RC	47	129	49	58	123	58	126	48	139	44
ACTCTCCTTATACGGA	ref_2047_RC	10	19	21	7	18	5	14	9	24	7
CGTGCTGAGTATACAA	ref_2047_RC	1	4	0	3	2	1	7	0	1	0
GCCTGGGAATATCCAG	ref_2047_RC	38	53	46	51	56	49	55	42	53	31
GGATGATGTCTGATCA	ref_2047_RC	54	57	57	50	86	51	67	43	77	50
AATACTTTAGTCATTG	ref_2047_RC	6	13	12	25	19	21	27	14	34	12
CTCGCCATCCGATCAT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
ATTATTGCGAAAACAC	ref_2047_RC	45	70	68	41	72	53	98	47	78	40
AAGAGTTCTAGCTTTC	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
CGTGGCTCGGTATCGA	ref_2047_RC	37	29	48	33	46	45	45	38	67	39
GTGGCACGATATTGTG	ref_2047_RC	84	122	111	101	121	59	135	70	119	78
GTTAACATACTGAGGT	ref_2047_RC	40	51	44	43	61	40	55	36	58	34
ATCTGTTGTTTCGTAT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
TATTGTCACGTGGCGA	ref_2047_RC	54	74	56	61	73	58	91	45	68	48
GCTTATTCCAATCCTC	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
TGGACTACAGTGATTA	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
AAGTGACCTTTCCCTT	ref_2047_RC	24	22	25	22	23	21	23	16	22	16
AGCTTTGCGTGTGATG	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
TCGATTCAGTCTACCA	ref_2047_RC	3	4	1	3	4	1	8	2	6	0
GCAACTGGCACGGTCA	ref_2047_RC	54	84	74	49	76	47	72	53	72	52
GCAAGTCCGGAACTCC	alt_2047_RC	55	87	58	62	77	54	77	55	93	42
CGGACCGCATCTTACT	ref_2047_RC	49	61	41	43	48	38	69	45	72	39
TATATGTCAGCCGTAC	ref_2047_RC	17	10	11	15	18	10	19	14	15	5
AAGCAAGAATAGGGCT	ref_2047_RC	3	4	3	1	6	2	3	2	9	1
ATCCCGCCATCTCGTT	ref_2047_RC	93	152	112	78	142	68	158	86	174	90
CCTACAACGTTATAAA	ref_2047_RC	11	44	16	18	35	14	32	19	33	8
TAAGCGTATTGCGGGA	ref_2047_RC	23	31	14	18	19	15	35	17	22	15
ATCTTGATCCAGTTGC	ref_2047_RC	55	99	73	76	90	51	101	55	90	43
AGCCGAGTGAATGGTC	ref_2047_RC	30	50	35	27	41	25	52	36	39	23
GAACCTCGCGATCATC	ref_2047_RC	9	16	15	14	16	13	16	14	23	8
CTGTTCTTAGTTAGGT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
CTTCAGTGCTTTGGTA	ref_2047_RC	35	79	56	40	89	39	96	38	82	36
TCATATTGCTGGTTCT	ref_2047_RC	20	35	25	20	38	26	45	22	33	15
TGAGCGGCGAACCTTT	ref_2047_RC	7	10	10	7	4	5	5	7	11	8
TGTTTAAGGGTCGGCG	ref_2047_RC	14	14	10	7	7	11	12	4	16	7
TTCCAGTTCGCGTGGT	ref_2047_RC	0	0	0	0	0	0	0	0	0	0
TAGGCGTACGCACTAT	ref_2047_RC	67	90	82	68	132	62	89	48	105	55
CTCTAGGACTGGTATT	ref_2047_RC	45	62	48	44	61	34	56	49	61	45
GTCTCTCCGGGTGTGT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
AACCCTTGCTCACCCT	ref_2913_upstream	7	17	23	24	15	14	13	20	8	13
GTGAGGACGGTGCATG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GATCGTCCGGGAGCGT	ref_2913_upstream	130	72	138	143	70	131	82	110	79	123
CGATCCAGATTCGCCG	ref_2913_upstream	108	52	118	115	54	101	65	97	63	88
TTATATCTGCTTGTAG	ref_2913_upstream	25	22	39	26	27	21	13	48	35	26
GCCGCCGACTACGGCG	ref_2913_upstream	12	12	17	9	11	15	7	16	12	6
GCGCTCTAACTGTCCC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CGCAGTTTCCTATACG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TGTTATCATATTTGCG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCGCCTTAGATT	ref_2913_upstream	18	10	15	23	17	22	10	15	10	10
AGCCCTCCCGTACACC	ref_2913_upstream	63	37	55	49	42	52	44	32	46	43
GTACGAATTTAATTGC	ref_2913_upstream	5	5	15	7	7	10	2	8	5	6
TACTACGCAAGACCGT	ref_2913_upstream	9	10	10	7	8	17	7	9	5	8
GCCCTAGTTCGGTAGC	ref_2913_upstream	79	62	94	108	65	71	71	81	69	87
ATTTCTGATATTCAAG	ref_2913_upstream	182	127	237	210	122	170	102	190	120	155
TTATTCGCCCGCGGGT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
AACAAGCCACTACGGG	ref_2913_upstream	11	20	35	25	21	27	23	26	14	23
TTCAGTGCTGAGGTTC	ref_2913_upstream	53	33	69	54	35	58	38	55	36	50
CGCTGGGGCAAATACC	ref_2913_upstream	74	54	70	78	64	59	70	66	78	64
GCCAACAACTGAACCG	ref_2913_upstream	31	29	45	61	32	45	38	30	29	44
GGACGGTTAGATCTCT	ref_2913_upstream	29	19	36	27	11	24	13	14	6	9
CGGCAGCACGTTCTGT	ref_2913_upstream	36	21	43	33	22	40	29	37	30	27
TTTACAACATCGGATA	ref_2913_upstream	3	3	4	5	6	3	4	7	7	5
GGGTTGGGCGCTAGAT	ref_2913_upstream	69	36	56	59	44	44	58	56	44	57
CCTCAGTATGCCAGTA	ref_2913_upstream	125	92	179	133	80	111	62	117	73	128
ACGTGGGTTTTTTTTA	ref_2913_upstream	32	22	45	44	23	34	24	39	19	24
ACCCCGTCTGGCCACC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCGAGGTAGAGCT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTTGCCAGCTTGT	ref_2913_upstream	56	49	96	68	44	52	42	64	38	68
TATGTGCCTGAAAGCC	ref_2913_upstream	73	35	82	88	41	60	43	59	26	73
ATTTTCCTATCCTGTC	ref_2913_upstream	124	79	129	135	79	106	65	113	70	111
CTCACGTATGACCATA	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCATCACCGTATCCGC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCGATTCCCTTGTTAT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCTAAGTCCGATC	ref_2913_upstream	72	58	80	71	73	62	56	76	78	66
TTCTGGATTAGGTCGG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
AGTATAAGGTGCGTTG	ref_2913_upstream	139	98	142	121	82	101	95	119	82	104
CTTGGACTATGGGTCC	ref_2913_upstream	56	40	76	57	48	39	44	55	28	39
GACACTCAGTAATGGT	ref_2913_upstream	11	13	11	15	6	7	25	13	17	3
GAAATCAAGCGACAGT	ref_2913_upstream	33	20	40	30	21	38	20	35	18	29
TCAACTCCCTCAATAC	ref_2913_upstream	39	49	26	23	49	30	63	25	58	22
GCATCCCGGCTCTGCA	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTCTCGGGCCTGT	ref_2913_upstream	30	14	13	16	18	18	15	16	13	14
AGGAATTATAATGTCC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
ATTCAGTACGTCCCCC	ref_2913_upstream	31	81	37	34	100	24	110	16	121	24
CAACGACCGAGGACAC	ref_2913_upstream	37	21	34	26	17	36	11	30	14	29
AGCCCTTTTAGGCAAG	ref_2913_upstream	85	58	119	118	63	98	59	78	57	98
TTACCTTGGGCTTTGG	ref_2913_upstream	47	23	46	37	34	61	26	41	30	44
CACTTTGCGAAACAGG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GACGACGGATGCGCTA	ref_2913_upstream	61	42	74	76	33	69	47	61	51	52
GGCTTATGTAGGTTGT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCGCACCTAGGACCAT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCAAAATTTTAAA	ref_2913_upstream	15	65	27	22	56	7	61	10	70	7
AGTTGTTGATTATAAA	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
ATATCAAACCATTATG	ref_2913_upstream	69	57	92	74	58	76	60	75	51	90
AGTAACCTCTTCGTTG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GCGAGTCTTTCTTTTG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTCTATGACCTCCCCA	ref_2913_upstream	6	14	11	14	13	12	7	16	13	13
CTCCTGTGCCGAACGT	ref_2913_upstream	22	23	29	20	34	30	30	17	21	30
TAAGGTACCATGCGTA	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAAGCGCGGGTAG	ref_2913_upstream	9	4	10	8	6	6	7	9	2	4
TCTCCTCCATGTGGAT	ref_2913_upstream	21	32	38	32	24	17	41	28	27	16
TGTCCTGGGCACACTG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TATACTGGGGCGCAAC	ref_2913_upstream	29	19	35	41	25	41	30	35	38	23
AGCATGTTTGATTACA	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
AATCGCATTGAATTAG	ref_2913_upstream	46	27	48	41	19	35	24	28	16	29
TCTATCGATTATTTAT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GTTAAGGTAAACTTCA	ref_2913_upstream	67	41	88	72	46	93	46	86	55	72
GGCACTTGCCAGTTTC	ref_2913_upstream	35	15	15	18	12	9	13	21	20	18
TATTATGTTGAGGAGT	ref_2913_upstream	101	64	91	122	70	99	59	87	57	100
GCTTTCGCAGAACAGT	ref_2913_upstream	36	26	61	35	22	32	34	28	28	29
ACTCTACGGTAGATGA	ref_2913_upstream	14	9	17	20	14	16	15	16	2	25
GAGTCTCCTTCAGTGT	ref_2913_upstream	28	24	34	26	20	29	34	17	35	35
GACACCTTCTCAAACG	ref_2913_upstream	39	16	46	33	22	23	28	23	27	27
GTTGAGGGTGTTGTGA	ref_2913_upstream	220	113	224	175	103	188	146	152	127	161
CCTTCATTTTCGCACC	ref_2913_upstream	48	29	35	43	20	41	21	33	21	30
TTCTACACGTCGTCCA	ref_2913_upstream	101	64	128	98	71	87	64	104	78	79
GATTACCGGTGGCAAG	ref_2913_upstream	95	68	118	108	68	105	76	96	61	91
AAGGACTTATCTCTGT	ref_2913_upstream	133	71	113	148	107	116	80	144	102	133
AAGATCGACCATACGC	ref_2913_upstream	7	21	13	7	7	13	2	13	12	18
GGCTGGTCAGTCACGC	ref_2913_upstream	157	75	172	203	84	158	105	173	115	158
ATCGTCGATTAGGCTG	ref_2913_upstream	43	21	57	39	32	45	28	33	34	33
GCCTTCAACCAGGTTT	ref_2913_upstream	200	142	220	223	138	193	173	196	159	176
AACGCTAGGGTCCCTG	ref_2913_upstream	82	55	97	84	49	62	68	94	47	79
TTGCAACGGATGTATC	ref_2913_upstream	46	31	73	54	45	39	36	44	43	51
TTAGGTTAGGCTGGAT	ref_2913_upstream	145	88	193	134	92	166	98	140	98	99
TGGGGACTTCCTGAGG	ref_2913_upstream	39	28	39	42	24	39	16	42	16	39
AATATGGACAATTAGT	ref_2913_upstream	36	36	62	72	47	56	33	57	28	54
GTCATTTCTAGTGTTG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTGGTCTCTTGGC	ref_2913_upstream	18	11	13	10	10	18	6	6	5	15
CGTCAACCTTTTAACC	ref_2913_upstream	220	155	240	257	202	200	150	217	178	179
TACGCTTAAATTTAAT	ref_2913_upstream	4	3	5	3	3	5	1	3	0	3
TGTGGTACAGATGAAG	ref_2913_upstream	34	28	46	28	22	25	22	26	26	25
TGAGTATCAAGTACGA	ref_2913_upstream	19	16	27	15	17	24	20	20	22	16
AGGGTAGACTCTGTTT	ref_2913_upstream	35	25	44	39	24	33	15	47	30	38
CGATTGACACCATCCT	ref_2913_upstream	123	91	192	164	97	130	110	121	107	129
CATAACACGCATCTAG	ref_2913_upstream	11	0	2	4	3	8	4	5	4	3
GATAACCGTTTTCGTT	ref_2913_upstream	1	2	3	2	0	1	1	4	1	1
GGAACCTGTTGGGGCG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGCTATGTATAAT	ref_2913_upstream	146	84	191	143	109	147	96	150	81	137
TACGAGCTTGCCCACA	ref_2913_upstream	38	24	38	40	14	27	21	26	20	31
TCGTATTCGTGTAGGA	ref_2913_upstream	4	8	12	14	7	4	10	6	4	0
CGAGCCTATAAAGCTC	ref_2913_upstream	8	10	10	12	11	6	10	11	10	10
TGCCTCATTGACTTCA	ref_2913_upstream	57	52	94	79	58	96	59	81	70	58
CTCTCACGGGCATTTA	ref_2913_upstream	92	67	103	105	50	88	48	88	66	82
CTGCGGGTTCACATGG	ref_2913_upstream	38	25	49	42	18	39	25	26	34	36
GGGTAATTCCCGCTGG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
AAAATGGTTCCGGCTG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGAGAGGTCCAGC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CACCCCTAGAATGTGT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TGGACCGCAGATGGCC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TAATGGAACTCGTCTT	ref_2913_upstream	90	52	102	81	64	84	61	90	44	83
CTTCTATTCGTTTTGG	ref_2913_upstream	56	41	64	62	47	67	48	39	37	58
TCCTATCTGTGCATCC	ref_2913_upstream	54	25	60	50	23	51	37	49	33	37
TCTTGCATCCCGGCCC	ref_2913_upstream	23	17	34	41	19	20	24	40	24	23
GATTGAGGGGTGCCAG	ref_2913_upstream	25	25	45	36	28	24	21	31	20	31
GAGCGGCATTTGGCGC	ref_2913_upstream	11	6	20	9	5	11	11	13	11	12
TAAGGCTGGTCCGGGT	ref_2913_upstream	86	48	71	81	42	55	45	67	65	71
CAGAAATTGCTAGCCT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTAGCAAGCGTAATCC	ref_2913_upstream	98	89	151	138	96	95	71	93	86	104
GGATACAATGTGCCCG	ref_2913_upstream	22	13	41	22	13	23	12	17	17	22
AGTTTTGTTTATGGTC	ref_2913_upstream	40	28	58	55	31	39	27	34	37	35
CCCGCAGTTTGTGGGT	ref_2913_upstream	7	7	7	4	1	8	6	5	2	4
GTGGGGCGCCAAGGTA	ref_2913_upstream	73	57	105	81	72	81	66	82	57	72
CTTGACCTTTTCTGTC	ref_2913_upstream	51	26	31	37	28	38	14	32	24	32
TATCCGTTTGCCTAAC	ref_2913_upstream	87	56	101	63	51	74	48	84	67	72
TGACCGGTAACAAGCC	ref_2913_upstream	49	43	54	47	38	51	26	43	44	31
ATTACGCAGTTCGTTC	ref_2913_upstream	2	10	0	2	3	3	1	0	4	2
ACTGATCTTTTTCGTC	ref_2913_upstream	22	15	20	25	7	26	8	17	11	22
ATCTGTAGCTAGGGTC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCACTATCATCGT	ref_2913_upstream	35	20	58	40	34	36	35	40	29	41
TTTTTTAATTCGTTTT	ref_2913_upstream	19	9	27	27	13	16	17	18	7	18
ATTATCTGGCCTCGAG	ref_2913_upstream	6	6	9	11	2	7	8	8	0	2
CACTAATTTTTTGTGC	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTACTACCCTGT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TTATTATGGACCACAG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CACTCGGACACACTTA	ref_2913_upstream	283	174	304	274	174	233	202	226	182	215
CATTCGTGGTGTGTCT	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGCTTTTAGTCTA	ref_2913_upstream	11	18	33	19	16	17	21	27	17	18
ACCTCGTACCCTTTGA	ref_2913_upstream	121	126	146	136	105	107	120	129	106	141
TCGGGGTGCACCACTG	ref_2913_upstream	0	0	0	0	0	0	0	0	0	0
TTAATTTCTTGTCGCC	ref_2913_upstream	118	76	119	99	71	108	61	99	72	93
TTCTGAGCCACAATAG	ref_5165_fdr	8	24	15	15	30	16	31	23	19	18
CAATTCTGTCACGTTT	ref_5165_fdr	30	40	24	27	30	18	36	33	40	25
GGGCTGTCTATCGTTC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTTATTATTGCAG	ref_5165_fdr	6	12	10	11	14	5	6	9	14	3
TTCTCCCAGAGTCTTA	ref_5165_fdr	27	34	27	23	27	29	34	29	28	18
AGTAACGTTTTCCCTT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTAGAAAAGAGAT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
AAAACTTTTCTCTTCC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GCTATTCTTACGTCCT	ref_5165_fdr	50	49	55	50	59	50	62	54	45	35
TGTTAGTTACTTGATG	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GTCCACTGAAATGGTG	ref_5165_fdr	78	77	66	52	73	51	79	67	99	48
CACCATACTTAAAGGC	ref_5165_fdr	80	116	91	78	136	98	130	72	115	72
GTGGCCCGTCGCATCA	ref_5165_fdr	5	7	4	2	10	5	6	6	6	4
CCTAGCAACCCCGCCA	ref_5165_fdr	7	28	16	14	15	9	10	6	21	5
TCGTATGATTACTATT	ref_5165_fdr	33	89	54	39	71	46	72	42	77	50
TAAGGCTGTGCCCGTG	ref_5165_fdr	62	92	89	63	86	55	92	61	68	53
TTAACCCTATCGCTTT	ref_5165_fdr	28	19	26	12	25	15	11	11	20	12
GTCTTGTGAGTGCACA	ref_5165_fdr	4	1	0	6	3	2	2	2	0	1
GATAGTCTACCGGCGT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTTGGGAGATTAT	ref_5165_fdr	2	16	6	6	12	10	17	5	12	7
AGAAATCAGTGGGTAT	ref_5165_fdr	236	257	246	190	251	202	230	167	251	188
TCGGGTCTCCGTTTCA	ref_5165_fdr	16	13	13	11	11	14	11	8	21	5
AGAGCAAATCTATTCG	ref_5165_fdr	3	3	4	2	5	4	5	0	9	7
GCCTGTTTTTTCGCGA	ref_5165_fdr	37	51	37	24	47	18	42	21	35	24
GATGTCGGCGGCAATA	ref_5165_fdr	29	27	24	37	34	30	44	24	35	29
GATCAGTGTTAAGCAT	ref_5165_fdr	31	57	43	21	35	38	36	23	47	28
GCGGCGGGGTCACCCG	ref_5165_fdr	8	11	17	15	13	11	10	6	13	7
ATATTTTGGAGCCAAG	ref_5165_fdr	89	107	107	89	102	83	123	93	122	69
GCAGGAGTTACTCCAT	ref_5165_fdr	29	31	25	16	24	24	33	21	19	14
GCATCGTCGGCCACGA	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGCAGTTCCAAGC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
TTACGGGATGACGTTT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCTTTCGTTGTCG	ref_5165_fdr	13	21	8	6	19	9	6	14	10	8
TGCTCCGCACGAAGGG	ref_5165_fdr	31	31	31	27	42	18	30	12	45	29
GTGTCACTATCTCTGC	ref_5165_fdr	25	33	24	14	29	23	34	22	17	16
GCACGTCGTGGACGCA	ref_5165_fdr	69	77	67	79	80	48	96	44	95	46
CTATTCCGCTTAAAAC	ref_5165_fdr	10	27	12	14	17	16	22	12	26	11
GCGGAATTTCTATTGG	ref_5165_fdr	112	129	125	125	148	128	131	110	143	140
ATCACTCCTTGTTACG	ref_5165_fdr	19	34	21	17	42	18	46	15	32	18
CTTTTACTGTGCGTGT	ref_5165_fdr	20	20	29	11	47	11	29	22	32	11
GGATGATGGTCCTATC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTCTAGAACAGT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCGTTCGTGAAGG	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCTTTGACTGGCG	ref_5165_fdr	36	46	52	26	48	27	45	27	37	36
GTATATTATTGGTAAA	ref_5165_fdr	13	15	14	13	16	10	15	11	21	15
CATCGTGGATGTTTCT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTTTCCGTGGTT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GTCAAAGTGTTGGTCT	ref_5165_fdr	6	11	0	5	8	6	16	3	6	2
CCCATTGCGCGTACCG	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCAAGGATGCTAC	ref_5165_fdr	8	13	12	2	5	10	7	10	9	9
TTAGCCGTGAATTTTC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAGTGATTCGGGG	ref_5165_fdr	10	14	24	14	18	17	22	12	18	9
TATCGCTGGTCGAACT	ref_5165_fdr	221	221	257	193	255	192	277	170	280	192
CGCTGTATTACACCGC	ref_5165_fdr	21	31	27	20	33	27	28	22	36	11
TCACGTTTTAGTTATT	ref_5165_fdr	24	37	24	19	33	28	36	22	26	14
ATGAAAAGTTTAGGCT	ref_5165_fdr	141	182	178	147	184	141	186	120	238	114
CTGAGACTCAGGCTGC	ref_5165_fdr	56	46	73	50	60	56	71	43	75	59
TGCTTTCTCTCGGTCA	ref_5165_fdr	3	5	4	1	7	6	20	1	3	5
TAGATGATTATTCGTG	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGGATCAATCCAG	ref_5165_fdr	12	12	16	17	21	5	21	8	21	16
CAGTGTTGTTTATGCT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
CGCTACAGTGACAACT	ref_5165_fdr	16	22	13	9	14	12	13	9	24	15
CAGGAATCGTCAGATT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGTTCCCTATAGT	ref_5165_fdr	13	15	22	16	19	15	23	8	23	21
ATGTCATGCCGATAAC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
ATGTAAGGATAAGAAT	ref_5165_fdr	19	22	20	13	17	15	30	11	20	11
TGTGTTCTTCCGTTGC	ref_5165_fdr	36	50	46	33	42	36	41	43	56	33
TCGTTAACATTCCCTC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
CGGTGTCATACCCTTC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
CACCGGCTCTAGACGC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCTTCTCTTAGTT	ref_5165_fdr	30	56	21	27	28	25	40	16	46	28
GGCTGCTAACGTCCTG	ref_5165_fdr	13	24	35	17	20	19	28	11	16	19
GCTGTTGGTTGCCGGC	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
TGCACGCCTTTCATTG	ref_5165_fdr	19	31	20	29	20	14	30	12	18	16
TAGGATCAGTGTGAGT	ref_5165_fdr	21	18	27	29	36	22	32	20	39	27
AGTTGTTTTGTATTGT	ref_5165_fdr	31	53	37	33	61	49	46	28	47	21
CGGGATGACAATGCCA	ref_5165_fdr	6	22	8	5	12	11	5	6	12	4
CGTGTATGAGCCGGGC	ref_5165_fdr	10	7	13	10	7	7	9	7	18	3
GTCCTTAAGATGATAG	ref_5165_fdr	24	25	17	12	20	8	16	13	13	9
TTTACATTACCGGCAT	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGGTTTGGCACGG	ref_5165_fdr	3	7	5	2	8	6	6	2	5	3
GGAAATTGGTCCATCT	ref_5165_fdr	16	13	13	15	31	8	22	11	20	13
TCTCGAACTTCGGCAC	ref_5165_fdr	0	2	3	2	1	3	3	0	5	0
TGTGAAGAATCAGGTG	ref_5165_fdr	6	8	10	10	8	6	8	6	7	9
GCTCCAGATATGACTT	ref_5165_fdr	11	18	9	11	10	9	6	6	5	9
GGGCTCTTCCTAATTT	ref_5165_fdr	44	57	53	47	37	47	56	53	56	44
ATTGTGTTGACGAGAG	ref_5165_fdr	15	27	38	15	32	17	29	24	52	18
AGAAGCTGGTGATCTG	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
CACCTCGTTATCTTTA	ref_5165_fdr	0	0	0	0	0	0	0	0	0	0
ATGTACTGTTTTGTGT	ref_862_fdr	18	18	29	21	28	17	15	12	21	11
TGCTTAATGTTCATAG	alt_862_fdr	23	21	21	19	25	17	13	23	17	16
TCTTCAGCATGGCGGC	alt_862_fdr	80	40	96	83	43	79	45	59	51	78
GTTGTACAATATGCAA	ref_862_fdr	31	56	27	26	33	23	31	28	28	22
CTTCATATGCTATCCG	alt_862_fdr	5	17	7	10	8	8	9	10	6	8
TTGGTGTCGTCTGTCT	alt_862_fdr	20	31	38	31	23	28	32	30	21	31
ATGTACTACTCCATTA	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
CTGGATACTTCGGGGC	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGGTTTGACGCCT	alt_862_fdr	44	47	48	42	29	40	44	44	45	27
CTACCATGAAGCTCAC	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTTATAAGGCATG	alt_862_fdr	21	8	22	11	14	15	11	18	15	12
ATATGACAAGATTGAG	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
GTATTAGCTGAGCTCG	alt_862_fdr	28	8	23	23	9	17	16	26	21	10
CCCCCTTCGCCACTGT	alt_862_fdr	17	6	11	12	6	12	6	8	6	5
CGAAGATTGTCGGCAC	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
CAAATTGTGATAGACC	alt_862_fdr	133	82	129	165	106	121	95	113	94	123
TATGTGTGTGGACAAA	alt_862_fdr	74	55	80	105	79	68	67	92	72	65
CGGTGATGTTAAGTGC	alt_862_fdr	22	44	45	32	38	25	61	19	44	22
TCTGCTTACGTTGTTT	alt_862_fdr	0	5	1	6	4	3	6	10	12	4
TGGCAATTCCGGATTC	alt_862_fdr	94	70	137	112	49	96	75	91	75	81
AATTTTCTCGCGTTTC	alt_862_fdr	3	5	9	6	2	10	2	2	2	0
GACCTATTGGCGGTAA	alt_862_fdr	49	33	59	42	28	54	34	46	37	48
CCGTTTCTCTCTGATA	alt_862_fdr	38	35	56	64	36	47	38	45	27	40
ATCGATGGAAGTAGAC	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTAAATTCCATG	alt_862_fdr	30	25	54	34	20	33	25	27	25	27
TCGTTACTTATGCGCG	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGGTTGAACTTG	alt_862_fdr	29	26	46	35	16	31	28	30	22	27
TCGCAACCTCACATTC	alt_862_fdr	113	74	139	109	75	93	85	107	75	118
GTTACTTCCAGCCCTA	alt_862_fdr	17	5	26	31	15	12	11	19	22	12
GAAACGTTCGAGGCGT	alt_862_fdr	3	1	2	4	1	4	1	3	1	0
TTTTGCGGGGCGTCCG	alt_862_fdr	44	29	37	42	46	36	23	40	26	32
AGGCTGCGCTTCGACT	alt_862_fdr	7	8	8	9	4	15	18	13	6	17
AACACTTGTTCGGGGA	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCCCTGGGCATT	alt_862_fdr	0	0	0	0	0	0	1	0	0	0
CTAGACATCATCCACT	alt_862_fdr	57	63	69	71	64	53	83	68	70	72
CTTATAGCAATTGGGT	alt_862_fdr	78	69	114	91	57	65	73	60	60	68
TCTTAGCACGGTTTGT	alt_862_fdr	103	71	149	97	79	92	88	91	109	98
GATCCTAAATACTGGC	alt_862_fdr	8	2	13	3	5	4	2	4	1	7
GCTGTCTGGAGCATGT	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAGTAGCACCTTC	alt_862_fdr	65	55	90	67	55	74	48	69	54	62
TCGACTTCATGCGTTT	alt_862_fdr	31	15	26	25	14	16	12	23	17	17
AATAGTTCTACAACGC	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
ATAATGGACGTGCAAT	alt_862_fdr	5	8	20	12	10	11	5	18	15	12
TTGTAAGTATTCGCTG	alt_862_fdr	126	74	185	146	93	138	101	128	103	104
CCTGGTAACGCATACA	alt_862_fdr	48	43	73	50	54	59	48	59	45	41
CCTCCCATTACTTCAA	alt_862_fdr	18	44	28	36	63	17	77	26	64	26
CAGCAGAGCATGGGAC	alt_862_fdr	144	102	160	144	82	137	89	122	120	120
GGGGGACGTCTTGTCC	alt_862_fdr	29	20	30	26	19	18	19	34	15	23
TCCGGAGCATTTGAAC	alt_862_fdr	46	52	61	54	31	40	35	41	37	48
TAGCGCTCTGGGAGGG	alt_862_fdr	36	22	29	39	23	26	27	39	24	27
ATCCCTAGCGAGCTGA	alt_862_fdr	69	44	82	87	47	75	45	85	45	85
TAACGTTTGAACAGTT	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTGGATGTCTCAC	alt_862_fdr	47	46	38	28	51	44	41	36	47	35
GTTAACTGGTCTGATC	alt_862_fdr	15	14	22	16	20	20	18	17	16	12
CTGGTCCAAGTTAGAC	alt_862_fdr	23	35	45	40	28	34	32	41	28	16
AACTGGTTGCTTTTTT	alt_862_fdr	76	64	97	88	47	76	69	92	53	76
CGGTCGTATAAGATGC	alt_862_fdr	26	31	9	9	23	12	25	8	17	6
CCATCGAAGGTGTAAT	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
TGGACCATGTAATTGC	alt_862_fdr	51	36	71	62	37	46	33	50	28	40
GCGGCTTGTTTGATGT	alt_862_fdr	180	124	196	162	117	141	107	155	122	142
TCGATATATTTAATCA	alt_862_fdr	52	61	77	60	36	73	47	64	44	58
TTTTGTTGCTCCTGAA	alt_862_fdr	19	18	18	26	13	11	10	10	12	23
CGTTAACTGTCTTCTA	alt_862_fdr	79	58	101	83	57	67	49	80	59	75
TATTCGAGTTAATAGT	alt_862_fdr	51	37	42	36	29	43	22	31	42	29
AACAAGAGTAGGAGCT	alt_862_fdr	106	78	128	107	65	108	77	106	101	105
AATGGCAGTGTACAAG	alt_862_fdr	7	2	13	8	2	5	3	5	6	2
GGATGTCTTTTAAGCC	alt_862_fdr	76	52	86	75	58	62	39	52	62	48
CCTAAGCAAGATCCTC	alt_862_fdr	50	41	70	58	36	53	66	64	66	60
CTTATACCCCCTAGTT	alt_862_fdr	60	40	54	74	43	49	29	55	48	48
TTGGATTTTAATGCAC	alt_862_fdr	45	38	54	43	26	42	24	40	32	41
ATAAGTTCATGCTCCT	alt_862_fdr	55	34	72	52	43	50	58	52	36	58
ACTGTACCAATGTCGC	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGTAGTTATGTTT	alt_862_fdr	18	17	31	29	16	30	21	18	15	20
ACGTAGATTGGATACA	alt_862_fdr	29	23	33	32	10	22	23	21	22	21
TTTGGCAATATGGGTC	alt_862_fdr	14	13	30	13	20	22	29	23	21	14
AGCCTGAGGAGTGTCT	alt_862_fdr	56	36	83	68	44	48	61	52	55	66
TTAGGTTGGGCAAGCT	alt_862_fdr	187	128	196	182	138	180	123	141	143	150
AACTCCGCCCTGGTCC	alt_862_fdr	41	39	62	42	38	42	43	44	33	44
GTGAATAGCGTGGTTG	alt_862_fdr	186	142	247	210	154	165	182	191	169	150
CCTCTAACTTGTTTCT	alt_862_fdr	181	128	201	173	131	178	125	157	130	136
ATCAATGCTTCACGGC	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTGTGTCTCTGGT	alt_862_fdr	547	380	635	481	335	482	406	464	411	453
TGTTACCCTGGGCATT	alt_862_fdr	449	397	521	480	387	407	399	449	401	417
CAGCTTTTCACCATTT	alt_862_fdr	17	8	20	15	4	15	17	20	5	15
GATGCGTTTTAAGCCC	alt_862_fdr	31	22	49	40	27	28	30	37	26	25
TGAATTCGCTATTAGT	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
TACACGTGTCTGTTTA	alt_862_fdr	231	220	298	282	276	227	234	202	266	257
ACCTAATTAATCAGTT	alt_862_fdr	47	29	54	44	41	43	45	62	22	51
CAGTGCTTTTGCCAAC	alt_862_fdr	54	34	65	53	46	42	50	63	55	44
AGGACTTCTCCGAGGA	alt_862_fdr	99	71	98	113	71	111	52	96	62	75
CCGGTTCGGCTGAGCT	alt_862_fdr	3	30	2	6	24	9	25	2	32	1
GGCTACGTGTCCCATC	alt_862_fdr	12	9	12	10	10	10	6	12	4	9
CCCAAAGTTACTACAC	alt_862_fdr	29	21	30	30	18	28	20	34	19	18
CAGTCTGTTAATATGC	alt_862_fdr	9	10	15	11	7	5	2	4	7	5
AAGGCTCGGTACATGT	alt_862_fdr	40	40	61	42	26	41	29	43	35	37
ATGTGTTTAATCAGGT	alt_862_fdr	37	24	51	54	26	36	28	41	31	37
TTGCTTACTTTGCTTA	alt_862_fdr	27	9	34	29	10	23	14	20	15	27
GCCGGGGATCGACGAT	alt_862_fdr	53	42	70	44	27	47	32	39	33	50
CCACAAACAACCTCAA	ref_862_fdr	106	88	161	176	123	127	125	144	115	140
TACTCTAACATGTTTG	alt_862_fdr	4	1	1	0	0	3	1	0	1	1
TATTCGTAACCTTTAA	alt_862_fdr	16	7	14	15	14	12	9	8	13	11
GCGGCATACTGGTGTT	alt_862_fdr	235	146	270	240	161	191	162	201	159	211
ATGTGCATCGTATGTT	alt_862_fdr	123	96	140	119	103	104	82	85	97	99
CTTGCGTTTCGGGAAC	alt_862_fdr	26	20	23	27	18	26	21	13	26	26
CTATCCGGACAACTGT	alt_862_fdr	117	119	99	121	125	90	117	100	129	86
AGCACTGCTCTCAAGG	alt_862_fdr	115	81	134	115	78	96	59	106	87	80
CATAAGGTTGTTTCAC	alt_862_fdr	12	0	18	10	9	9	7	17	11	8
GGCCCTCTCGATACGT	alt_862_fdr	32	17	39	42	21	41	24	44	26	34
GGTGATCTTGCCTTCA	alt_862_fdr	0	0	0	0	0	0	0	0	0	0
CTTATCCAGGTTCACG	alt_862_fdr	7	2	7	3	5	5	10	4	7	5
CGCAAAATCGTTTCAT	alt_862_fdr	21	15	24	16	14	33	6	19	19	24
TATTAGCCTTACGCCA	alt_862_fdr	11	8	26	10	13	14	16	18	17	9
TCTTGATGAACTGTGC	alt_3685_reverse	16	34	17	16	28	13	29	14	34	10
TTGTTCCGGCCGTTTC	ref_3685_reverse	91	141	98	76	127	76	166	59	159	56
TATCGGGCCCCCTGAA	ref_3685_reverse	42	48	49	43	58	36	53	46	52	40
GCAGGAAATTACCTTT	ref_3685_reverse	11	35	39	29	43	17	39	20	35	16
TCCCTCCTCCGAAGAT	ref_3685_reverse	18	40	26	24	25	29	30	35	39	27
TAGCAGCCTTCTCGCT	ref_3685_reverse	8	16	16	11	5	13	12	15	16	7
TTCTCAAGATGACTCC	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGTTCGTCCGCTC	ref_3685_reverse	53	72	74	35	68	53	84	42	74	37
GCGGACTCATCTTTTT	ref_3685_reverse	149	162	201	171	151	170	179	157	147	143
GACCTCTTGTTATTAT	ref_3685_reverse	125	96	98	109	129	91	117	83	121	107
GACTGCTTGACGTTTA	ref_3685_reverse	12	22	16	11	17	12	28	20	20	14
GATCTCACAGCGACTC	ref_3685_reverse	2	2	3	2	6	1	5	3	2	6
AAAGGTGTTTCATATC	ref_3685_reverse	2	8	5	9	4	2	7	4	10	8
TCCGATTCTGGTTTTA	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
CTCCCAAATCATTCCG	ref_3685_reverse	3	8	9	8	12	1	9	18	11	7
GCTTGTGCACTATACA	ref_3685_reverse	19	41	29	16	34	12	43	12	53	27
ATCATGTTTACCAGGT	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
CCGATTGGCGCCCCGC	ref_3685_reverse	70	97	111	76	94	91	100	87	131	61
GCGGTACTCTATCGTC	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGGTCAATATACG	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
TACGTCATTACTGTTA	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTGACGGCTTTGA	ref_3685_reverse	58	61	73	54	66	61	87	45	78	50
AGTGTATGACTACGTT	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
GAACTTATACTGTTTA	ref_3685_reverse	90	97	102	100	118	69	93	89	97	98
TAGCTAGTTCATGCGT	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
CCACATTATCGGCACT	ref_3685_reverse	2	12	14	10	16	7	7	9	12	8
CTCCAATTCAAATTGC	ref_3685_reverse	0	1	2	1	1	0	6	0	2	0
CCACAGAGTTTCTGCA	ref_3685_reverse	10	7	8	3	14	6	13	8	9	7
GTGTATGTGGAATGCC	ref_3685_reverse	17	31	27	19	24	15	39	16	22	18
GTTGCGATTCGCGGCG	ref_3685_reverse	3	0	2	5	2	2	1	0	1	1
TCTCTTTAGCGTGCCC	ref_3685_reverse	18	22	10	11	15	7	30	11	22	7
CCATCTGTACGGATTT	ref_3685_reverse	21	49	34	29	53	13	57	32	59	31
AGGCCGGTGTGTAGCA	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
AACGGTGAGCCTCGCG	ref_3685_reverse	28	66	39	37	32	35	58	30	52	28
GTCGCAATTTGAAGCA	ref_3685_reverse	14	13	9	20	23	21	25	10	21	20
TGAGCACCAAGCGATG	ref_3685_reverse	95	113	115	99	145	101	130	101	130	114
TTGCGCCACGATGACA	ref_3685_reverse	50	39	51	41	38	45	49	41	48	35
CCTTTCCCGCCCACCG	ref_3685_reverse	16	19	12	12	12	10	23	11	6	14
GCAACCGTATACCGTG	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
ACGCGAGCGGTAAGGG	alt_3685_reverse	75	88	104	95	81	89	85	86	98	65
CGTAGAACTTACCATT	ref_3685_reverse	9	34	6	14	47	8	28	10	47	8
GTTCCTTATAAGGTTT	ref_3685_reverse	17	33	24	28	29	20	37	13	35	21
GATCCTGACGGCCTCA	ref_3685_reverse	10	14	18	12	19	7	11	12	17	17
CGAGGCATCCCGTGTC	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
AGCCAATATAAGAGAT	ref_3685_reverse	1	0	3	2	1	1	0	3	2	3
ATCCTCTGAGTCCAGT	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
GCAGCATGTTCCATCT	ref_3685_reverse	25	38	39	36	51	29	46	32	40	38
AGGTGGGTGAACACGC	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTGTTTGATTGAT	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGCGATTCCTCGC	ref_3685_reverse	67	69	100	68	84	62	95	72	81	89
GATTCTTGTTGACCTG	ref_3685_reverse	0	0	0	0	0	0	0	0	0	0
ACCACATACTAATGCC	ref_3685_reverse	88	76	85	78	97	63	100	73	87	54
TGTTCTCGGGGTCTGA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GTTACGTAGCGGGGTG	alt_2040_RC	16	4	10	12	3	9	6	7	6	8
GCACCTTCCCAAATGG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CGAGGTTTGGTCGCCC	alt_2040_RC	20	6	12	15	9	2	2	18	4	8
AACCTGGCTTACGGTT	alt_2040_RC	39	22	44	41	23	33	33	46	27	25
ATAGCCAATGTACCAT	alt_2040_RC	55	37	53	37	35	45	48	57	42	39
GGGAGAATCTTATAAG	alt_2040_RC	35	17	63	55	25	51	24	49	29	40
TTCAATAATAGTACGA	alt_2040_RC	42	17	60	38	13	44	20	38	22	31
GCCTTCAGAATAACTT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
AATGGTCGTTTTAAAA	alt_2040_RC	13	4	22	16	4	16	4	15	17	11
AGTAGCTAAATTCGTA	alt_2040_RC	174	102	214	200	89	174	107	192	104	161
AAGGGATTTATTTGAT	alt_2040_RC	102	44	125	88	60	102	46	100	55	86
AACGGCAAGTCGGTCC	alt_2040_RC	57	20	60	38	22	49	18	44	25	35
GATTGATGAATGCTCA	alt_2040_RC	40	19	55	51	28	48	36	29	22	52
AATGGTTTGGCCGGTT	alt_2040_RC	240	105	300	250	112	223	85	219	120	217
TCTGGTCTACTCTTTT	alt_2040_RC	20	8	18	19	8	12	18	22	11	14
GTTGATCCAAGCCATC	alt_2040_RC	246	132	333	257	134	253	126	248	144	281
AGGTAAACCGGATTTG	alt_2040_RC	120	68	144	130	66	124	76	104	79	96
CTCCGGGCCACGTTAT	alt_2040_RC	122	54	163	108	66	132	66	98	71	96
GCCGTAGGTCGATATT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TTTGTGATACCGCGCT	alt_2040_RC	62	58	84	63	30	78	48	67	49	74
TTCTGGGTCACCGGCA	alt_2040_RC	54	45	93	63	24	63	36	65	39	43
GCGAGTCCTTAGCAGT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CTAGTTTATTCAACAT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GGTGGTTCCTGACTCG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
ATTGAGCAGTTATTTC	alt_2040_RC	75	39	97	76	42	77	33	58	46	59
GGGTGTTAGGTGATGG	alt_2040_RC	59	36	93	95	39	80	52	67	38	63
GACATTGAAAATTATA	alt_2040_RC	179	95	208	193	93	155	92	153	75	156
CATAGTTGCTACTTGT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
AAAACCCGCTTTAGTT	alt_2040_RC	151	53	208	157	61	118	88	145	75	152
CAGGCTGTATTATAGT	alt_2040_RC	49	16	38	48	22	45	27	35	17	54
TCAGATTTTTTGCCGC	alt_2040_RC	11	4	13	10	5	10	12	11	6	7
CCTCATAGAAGCTTGC	alt_2040_RC	96	53	105	109	38	81	39	107	66	85
GTTAGAGACACGTGTA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GATGATTGTATCCTGG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TTCGGTCCTAGGCTCG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CGCAAATTAGTGCGAA	alt_2040_RC	33	13	45	31	23	33	13	31	22	22
TAAAATCGGGATTGGA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CAAAAAACTATTTTAC	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CATATAAGTTGTCTCT	alt_2040_RC	21	16	33	21	9	23	24	26	26	25
CCGCTTAATTTGCACT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CATTTCATTCTCGTCT	alt_2040_RC	8	1	5	6	2	12	1	2	4	8
CTTCGCCATCTGATCG	alt_2040_RC	8	1	9	7	7	4	12	3	10	8
GCAACTATCTTCTCCT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TGCGAGATCGAGCACT	alt_2040_RC	201	60	240	246	89	189	87	195	105	166
TCCTTGTTCATTTTTC	alt_2040_RC	90	30	74	70	32	61	30	73	28	55
TTCTTTACGGAGACTT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CGCCTGCGTCTCCGAC	alt_2040_RC	501	303	676	601	364	534	331	548	363	481
AATTCATGGTTTTTGG	alt_2040_RC	43	25	52	33	21	47	27	30	22	31
TGACTTATGAGATTAT	alt_2040_RC	38	32	47	46	19	37	20	35	24	39
TAATGACAATTCGACG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GGAACGACAACGGTCG	alt_2040_RC	104	51	97	105	46	80	65	99	71	83
GCCTCGTGTCGTACAC	alt_2040_RC	100	59	107	99	77	99	50	86	69	105
TTTCTCTCTCGCTCCC	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TCATCATCCCTCTTCT	alt_2040_RC	10	6	23	20	9	15	6	17	8	11
AGTTGAGTACGCTCCG	alt_2040_RC	5	2	4	2	2	1	4	5	3	3
CCCTCCGATAGGGCAG	alt_2040_RC	4	1	5	7	3	7	2	3	1	0
CTCGATCAGGAGTTGC	alt_2040_RC	28	18	47	46	24	28	15	34	21	33
TCCCGCACCCTATCGG	alt_2040_RC	34	31	44	31	27	33	22	35	27	37
ATTGTGGGCACAACGC	alt_2040_RC	93	52	103	81	41	101	58	94	53	76
CCGCTCCAGGTACGCG	alt_2040_RC	27	8	38	31	15	24	16	20	18	20
TTTGTCCGTATAGCCT	alt_2040_RC	64	24	81	67	31	64	34	52	35	37
GTTGATTACTAAACAT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GGCATGATTTTCGTAC	alt_2040_RC	14	12	30	20	13	17	6	21	16	11
AGTACAGGGTTATCAT	alt_2040_RC	85	32	114	94	55	79	50	73	46	77
TACTTTTTGAGAGTTA	alt_2040_RC	144	80	174	181	85	141	87	161	89	156
TAAGGGGTTAGCAATA	alt_2040_RC	66	31	83	56	26	87	35	66	29	74
GTGTCGTTCCCCTCGC	alt_2040_RC	69	22	85	63	28	69	44	54	56	57
TGAATGCCTGAAGCAA	alt_2040_RC	64	33	84	68	29	71	37	69	35	72
TTAGCCCCAGATGTAG	alt_2040_RC	116	72	123	112	62	89	70	80	73	101
TCACCTATCTAGTAGG	alt_2040_RC	17	19	32	28	21	31	18	20	23	32
CAATAGCAATGCCGGC	alt_2040_RC	302	141	376	337	152	300	134	272	164	283
ACGTTCAACTTCCGGC	alt_2040_RC	62	44	83	67	27	70	30	61	41	78
CCAGCGTAACTGGTTT	alt_2040_RC	111	62	128	125	55	87	55	98	61	93
TCATACGCTTTGCCCT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CTGGGTGGTTTTTAGG	alt_2040_RC	115	51	150	137	56	113	58	132	55	107
CTAATAACTTAAAATT	alt_2040_RC	228	92	267	231	113	220	96	180	109	184
TTCTTACTTTATATTG	alt_2040_RC	120	70	157	127	87	119	57	142	54	126
AGGCCTCTGGATAGCC	alt_2040_RC	36	25	68	54	29	44	24	36	28	55
ATAACTACTGCGAAAT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GCGCCGGATACCATTC	alt_2040_RC	154	105	217	163	96	151	97	147	100	158
ACCCGCTAAGCGTCCG	alt_2040_RC	128	83	154	113	94	131	76	90	84	112
ATTGTTCCCGTATGTA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CCGATCGGGTACTGTT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TACTTTCTGGTGATCT	alt_2040_RC	0	2	1	7	3	7	2	3	3	2
ACGCTCTTTGTGCCTT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TCACGGTCACGGGAAG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GATTATAGCATAAATG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GTCAGGAAGCCGAATG	alt_2040_RC	122	79	180	132	65	118	82	131	80	119
GTGGGCATATCCGTAT	alt_2040_RC	0	0	0	0	0	0	0	1	0	1
ACATCTCGTCTTCTGC	alt_2040_RC	83	32	86	83	44	77	45	70	43	63
CCATGGAGGTTCACGT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GGGCCCCTCACCGGAT	alt_2040_RC	165	68	182	145	63	143	64	159	76	137
AGATTTCTGAAGGATG	alt_2040_RC	142	69	150	143	72	119	82	146	52	129
TGTGAAGCCTTGTGAA	alt_2040_RC	62	40	113	95	47	88	38	73	40	82
GCATTGTCCGGCCGAG	alt_2040_RC	118	79	127	98	57	104	65	102	56	91
GATTTTTTCCCAAGGT	alt_2040_RC	196	77	274	227	78	206	89	182	95	181
TTATTAATTTCTAGAT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CGATTACACTCCTTGG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CCTGGGTTTTCTTTCG	alt_2040_RC	148	49	197	148	57	132	72	135	70	133
TTTCTAGCTATTCTTT	alt_2040_RC	15	8	10	11	6	2	4	12	4	4
ATTGCACACCACGCTC	alt_2040_RC	190	100	280	223	105	196	97	213	107	171
ATGCTGTCTGATTGTT	alt_2040_RC	154	77	142	176	99	156	80	117	102	122
TGGCATTTACAGCGGT	alt_2040_RC	31	16	27	29	14	26	15	41	17	28
ACATGGCGGGAGATCC	alt_2040_RC	31	14	46	34	10	24	10	34	21	35
ATAGAGGTTTTAAATC	alt_2040_RC	57	24	64	53	24	53	25	41	28	40
CAGAGAGCGCGTCAAA	alt_2040_RC	70	37	72	71	38	68	29	68	26	67
GCTTCGAGGTCAATCA	alt_2040_RC	229	100	283	257	134	194	115	227	151	220
TCCTATCTCCCTTTGA	alt_2040_RC	51	27	81	53	30	43	40	58	39	50
CAGGGCCAAGACTGCA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTGGCTGATTAG	alt_2040_RC	36	22	43	32	20	44	28	26	19	26
TGTCATCTCGGGTTAC	alt_2040_RC	84	42	123	98	54	102	49	91	55	94
GCGCTCCGGGGTGCAA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTGATGCGGAGT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
ACGCGACTTCGTCATG	alt_2040_RC	60	26	65	59	28	45	25	57	39	55
TAGTGACCCAGATACG	alt_2040_RC	126	89	175	167	71	144	93	140	87	129
CCTAGCGTCCGGCTTT	alt_2040_RC	135	76	148	129	77	130	74	115	62	126
AAGCCACACCCGCTCG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CAATACCGGCCCGCGA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TCACGGTTCAGACTTT	alt_2040_RC	220	125	267	229	116	196	124	183	116	209
GGCTTGTCCCCCAGAG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TATCACCAGAGCTTTT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GGCTGTCATGTCTCGT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TGCGCCCTGTGTTCTA	alt_2040_RC	13	8	26	11	10	18	4	3	11	14
GCTATGCAGTTAGGCT	alt_2040_RC	89	52	106	95	55	101	64	86	62	92
GATTGGGTATTCTAAT	alt_2040_RC	244	95	278	245	93	221	125	205	96	186
TGCCTGTTTGGAAGCT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCTCGCCTCAGA	alt_2040_RC	113	53	125	110	61	96	52	121	61	118
AATCGCTCACGTTTCT	alt_2040_RC	66	23	83	59	20	53	35	67	20	57
ATTGCAGATTGCTCCT	alt_2040_RC	7	1	1	4	3	4	4	1	1	0
TGATTCGCCTTGGTTG	alt_2040_RC	30	19	27	37	25	26	20	30	25	30
ATGGTTATCTCGCCTG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CACGCTACATGGCCAT	alt_2040_RC	82	62	125	96	38	102	36	81	39	84
TTTGAGTATGTGGTAC	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CTCTAAGCTCACGAGT	alt_2040_RC	60	30	76	49	37	45	35	50	36	46
GGCAGATGTAAGTTAT	alt_2040_RC	35	8	24	20	5	17	11	17	10	20
GCTCCAGAGCTCGGTT	alt_2040_RC	44	32	44	45	41	47	37	49	46	45
GGACATCCTGGCATGG	alt_2040_RC	44	12	29	35	18	28	15	34	20	32
GTTCATTATTTCCAAT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TCCCCAAAGCCTCCGC	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GCTTTAGACGTGCTCT	alt_2040_RC	24	11	33	31	29	24	14	29	37	32
ATTTGACCTCCTAGAT	alt_2040_RC	90	37	109	89	40	73	38	75	43	86
AAACGGCCTGCTTCCC	alt_2040_RC	10	8	16	11	8	6	13	11	1	11
TGTGCTCGCATTTGTA	alt_2040_RC	73	31	74	63	25	52	24	60	45	57
CTTCATTCGTATTTGA	alt_2040_RC	39	11	52	62	26	55	22	41	31	47
ACGTATAATTTCCTTC	alt_2040_RC	124	49	166	103	54	109	59	90	46	117
AATTATTGTAATTGGG	alt_2040_RC	65	33	67	60	25	57	27	72	30	57
TTGGAGATGGGCTCAT	alt_2040_RC	127	71	185	122	61	136	72	123	58	115
TGCATCTGGTCCATTC	alt_2040_RC	59	37	72	52	17	58	30	56	27	51
TTCCGTGGCACAGAGC	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
GGACTTACCGGCATCG	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
ATTATGATGCGGCACT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
CTAATTATTTGGAACA	alt_2040_RC	88	58	134	108	65	91	73	79	74	102
GTCCTGTTAGGACTTG	alt_2040_RC	4	1	4	2	5	4	5	4	3	1
TCTTGTGATACACTTA	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
AAGAAACCGAATCCAT	alt_2040_RC	111	56	114	124	41	106	54	86	47	108
AAATAAGCTCTTTCCT	alt_2040_RC	0	0	0	0	0	0	0	0	0	0
TGTACCTCAAGCATCT	alt_2040_RC	52	20	56	53	31	61	27	43	38	53
GAAAACTTCCAAGATT	alt_2040_RC	3	1	5	3	1	4	2	4	1	5
GTATTTCCTTCCTATC	alt_2040_RC	37	15	63	47	20	31	24	43	25	37
TTGTCTGCAACGTCTG	alt_2040_RC	202	112	307	262	116	230	124	219	149	198
GCACCTCGTCGCGCCA	alt_2040_RC	49	24	28	33	27	31	34	43	28	29
AGCTGGGATGCTGGGC	ref_5992_new	177	48	169	128	52	135	40	135	63	162
TAATCCCGTGGCTACC	ref_5992_new	45	17	69	37	17	50	24	31	18	35
GCCCGAAGCGTTTAGA	ref_5992_new	65	26	76	54	23	55	31	64	38	86
CAAGATCAGCTCCCGT	ref_5992_new	298	112	385	219	140	285	131	265	152	286
GTTATACTTCATCTAA	ref_5992_new	100	27	99	71	34	93	25	83	41	80
GTCGCTAATAATCTGT	ref_5992_new	25	6	30	22	7	30	6	25	10	25
GAGACGCAGATGGCCA	ref_5992_new	97	42	132	70	39	85	49	87	44	101
GCCCCCCCTGTTGGCG	ref_5992_new	112	49	111	71	55	82	38	83	52	102
TGGTATGTAATCTGAT	ref_5992_new	323	116	386	290	140	298	108	294	114	263
CTTTCTTCAACCCGCC	ref_5992_new	272	98	310	160	92	245	100	194	105	253
AGTATGGGTTTTGAGG	ref_5992_new	20	6	23	10	7	14	5	9	7	8
GCCTCATATACGCCCC	ref_5992_new	118	45	146	75	54	114	39	85	45	87
GGTAATATTAGTCTTA	ref_5992_new	114	41	148	96	32	97	39	80	45	121
TTAGGGATAAGCCTCC	ref_5992_new	7	2	2	4	1	3	0	2	3	7
TCATCATCTAACGCCA	ref_5992_new	30	5	32	16	12	24	8	22	14	26
ATGAGGATGACCTCAG	ref_5992_new	0	0	0	0	0	0	0	0	0	0
TAAAGTCGCCATACTT	ref_5992_new	146	47	159	110	52	113	67	107	58	131
ATCGTTACCATATCCC	ref_5992_new	211	81	218	119	70	160	77	151	93	210
GGCCTGGATTACGCCA	ref_5992_new	0	0	0	0	0	0	0	0	0	0
GTAGTATGTTCGGAAT	ref_5992_new	0	0	0	0	0	0	0	0	0	0
TTGTTAATAGCTCTAT	ref_5992_new	0	0	0	0	0	0	0	0	0	0
GCACACTTAGTTTTTT	ref_5992_new	617	237	727	433	264	534	258	479	229	583
AGTATTAATGGTGTGT	ref_5992_new	82	26	88	71	21	62	26	60	27	56
TAGTTTTTATAATAAG	ref_5992_new	15	10	15	13	12	18	13	25	4	16
TGGTGTCTCTGCCAGT	ref_5992_new	137	46	147	90	54	136	47	94	29	107
GTGCGGAGTTTAAGAT	ref_5992_new	45	21	62	43	20	46	21	46	25	49
GTATTTTTTCTTGGTT	ref_5992_new	33	11	43	18	12	30	19	34	13	34
CGCCTCCTTGCGTCTA	ref_5992_new	0	0	0	0	0	0	0	0	0	0
GTGCGATCTCAGCGCG	ref_5992_new	156	41	142	103	44	113	50	114	59	119
AGGTACCTGGTTATTC	ref_5992_new	0	0	0	0	0	0	0	0	0	0
TCAAGGTATCTCAGTT	ref_5992_new	202	57	189	91	55	138	45	140	48	147
CCTGATTAGACTACAC	ref_5992_new	275	207	338	232	217	284	246	287	218	270
GAATGGATTGCCTCAG	ref_5992_new	24	12	25	14	7	21	8	28	10	33
GCTTTTAGTGCTCGCG	ref_5992_new	71	18	55	41	18	39	18	41	16	39
GTAACATGCGGAACGA	ref_5992_new	111	27	104	69	20	121	25	72	27	80
CAGCGAGAGTTCAGGG	ref_5992_new	0	0	0	0	0	0	0	0	0	0
GGAGGTAATTTAATGG	ref_5992_new	37	13	52	26	27	58	18	55	17	35
ACCGCCGTTCGCCGCC	ref_5992_new	103	28	97	63	37	77	37	65	42	86
AATTTCCCATTATAAT	ref_5992_new	156	64	194	82	75	142	61	113	54	105
GGTGTCGTGGGAATGT	ref_5992_new	136	37	204	83	48	135	44	120	50	116
TCTTTAGCTGCCTGAA	ref_5992_new	236	81	265	153	84	203	77	185	78	178
ATACCTTGTTAGATTC	ref_5992_new	57	27	68	50	13	39	26	55	24	47
AAGAGAGAGCCGCATT	ref_5992_new	117	49	131	79	43	110	46	88	41	85
GACGGCAAAGCGCTCT	ref_5992_new	361	108	390	214	123	312	135	234	132	284
CCTGTCGAAAGAGATG	ref_5992_new	147	50	122	82	48	112	55	108	56	109
CTCTTGAGGACCGCTA	ref_5992_new	621	194	704	403	187	515	178	503	253	499
CGGTTCGCTCCAGTTC	ref_5992_new	0	0	0	0	0	0	0	0	0	0
AACGTGCGTGATGACT	ref_5992_new	190	54	194	99	51	131	64	134	75	140
TGCATATGGCAAATTA	ref_5992_new	126	44	124	77	35	88	39	73	30	90
CAGAGAGAAATTACGG	ref_5992_new	32	15	48	30	18	22	10	23	4	34
TCGGTGTTTGTTGTAT	ref_5992_new	345	131	433	280	137	332	143	295	152	366
ATCGCACTATCACGTA	ref_5992_new	0	1	0	0	0	4	0	0	0	3
TGTACTGTTGTCTCGG	ref_5992_new	2428	693	2680	1669	776	2006	831	1947	834	2018
TTCGGCCCGTACTTAA	ref_5992_new	149	64	166	102	72	118	76	120	89	135
TTGTGTCCGGGGCTAA	ref_5992_new	56	11	52	41	20	54	16	47	26	49
GGGCGGGCCATCTCCT	ref_5992_new	0	0	0	0	0	0	0	0	0	0
GCCACATACTCTTATG	ref_5992_new	110	42	144	67	45	93	36	91	46	96
ATTATATTTGCGCTAC	ref_5992_new	89	18	97	47	22	51	35	50	32	56
TGTTTGGAATTCTTGG	ref_5992_new	130	37	150	86	59	119	48	112	58	125
TTTGACGCTCCCAGGT	ref_5992_new	31	8	25	18	8	21	13	27	12	32
TAACCGACTCGTATTT	ref_5992_new	56	22	73	44	21	52	30	37	27	53
TGAGATAGTTAGAGTA	ref_5992_new	31	8	38	9	7	17	10	23	8	25
CCGAATCCAGTACATG	ref_5992_new	65	64	47	42	60	38	92	35	69	41
GTATCGCACGTATTTT	ref_5992_new	287	101	305	142	97	255	102	216	101	213
TGTTAGCGTCGTTGTA	ref_5992_new	0	0	0	0	0	0	0	0	0	0
TGGTTCATACCCGTCG	ref_5992_new	219	71	237	121	90	179	90	184	79	180
CATTTCACCCGGTGGG	ref_5992_new	0	0	0	0	0	0	0	0	0	0
TACGTACTCTACATCT	ref_5992_new	180	55	176	102	57	133	58	156	70	152
ACCTAATTGATGCTTT	ref_5992_new	30	8	47	33	10	28	15	28	19	44
CTCCGTATTGCCTGCT	ref_5992_new	244	119	247	169	167	223	119	225	140	204
ACACCCCAAGCTGCGT	ref_5992_new	127	69	129	92	82	94	68	104	59	93
CCTGAATGCTAACTGA	ref_5992_new	2	20	2	2	8	2	17	3	8	2
GAAAGGTTCTGCGCGG	ref_5992_new	3	11	8	10	3	5	11	5	9	9
TCTGTCGTAGTCTGTT	ref_5992_new	323	105	319	230	104	272	78	266	93	272
ATACTCTTATGATTAC	ref_5992_new	0	0	0	0	0	0	0	0	0	0
TGCTGTCACAAGCGAT	ref_5992_new	275	103	313	190	74	267	79	199	79	257
GTCCTAGTACTCTGTG	ref_5992_new	56	65	76	70	59	58	64	78	63	76
GCAGACCCGCCTGCTC	ref_5992_new	0	0	0	0	0	0	0	0	0	0
ATCTAAGTTGAGCGAG	ref_5992_new	144	62	141	101	64	106	68	102	77	125
TCCCTACGCTGACATC	ref_5992_new	8	8	15	14	4	14	8	15	5	17
CCGCTTCCTGTTCTGT	ref_5992_new	0	0	0	0	0	0	0	0	0	0
CCCCACTAATTTAAGT	ref_5992_new	30	19	68	40	28	46	28	31	24	39
CGTTTTGTGTGCTGCG	ref_5992_new	124	41	121	81	45	104	53	85	45	94
CGGGGGTGATGAGTAC	ref_5992_new	70	29	76	52	35	61	29	62	35	65
GGAGGACTCTACAATT	ref_5992_new	28	14	34	29	7	20	14	29	10	25
TTTGCTGGGATAGCCC	ref_5992_new	77	26	91	55	27	61	45	46	44	62
ATTTCGATTCCATAGC	ref_5992_new	0	0	0	0	0	0	0	0	0	0
AGATATGGATTTAGGA	ref_5992_new	135	29	130	82	61	106	48	102	45	97
GTCTATTTCCAGCGTT	ref_5992_new	114	43	109	74	32	81	45	73	36	102
ATCATAAGACATTTTT	ref_5992_new	285	128	297	187	125	240	138	231	113	247
CCCGCGAAGTCAGGTC	ref_5992_new	95	66	130	91	70	99	66	94	96	84
CTTCTGTCAAAGTTCT	alt_5163_upstream	26	70	38	34	71	39	89	39	77	22
TGAGAACACTCCGACT	alt_5163_upstream	19	143	29	24	129	14	114	16	141	26
GGATTATTCTAACGCC	alt_5163_upstream	19	28	19	5	27	9	21	5	20	8
ACCGCTTCCTTTTAAC	alt_5163_upstream	17	78	32	35	72	32	72	31	62	16
TCCTAATGGCGCTAAA	alt_5163_upstream	72	84	78	50	89	66	93	83	121	49
ACCTATGTGATCATCT	alt_5163_upstream	37	64	50	31	53	29	57	25	92	49
TCGGTCGTTCGCCCCC	alt_5163_upstream	15	9	7	7	19	8	22	8	20	8
ACTATCTCAAATAGTC	ref_5163_upstream	19	24	34	13	37	28	32	20	45	21
ATCGCCCACTACGAAA	alt_5163_upstream	6	8	6	6	7	4	15	3	13	5
GCGTTTATGGCCACCC	alt_5163_upstream	59	74	60	49	75	41	67	42	80	27
ATTATGCCCCCGCGTG	ref_5163_upstream	91	129	110	102	137	73	112	90	155	87
TTAAGCACCGTACCGT	alt_5163_upstream	2	0	0	1	3	1	2	3	1	0
TCACGATGCGTCCACA	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTCATCATTCTTC	alt_5163_upstream	6	9	12	1	19	11	20	7	11	5
AAAATGGCGGTATTGC	alt_5163_upstream	20	12	15	27	14	14	18	16	20	13
TTAAGCAAAAATGCCG	alt_5163_upstream	84	89	80	60	69	57	93	53	95	58
CTTCGATCGATGGGAC	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCACCATGCGAACCGG	alt_5163_upstream	27	29	23	24	48	24	53	29	48	15
GCAGAACGGCTGTTAT	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCCTACATTGATTAGG	alt_5163_upstream	27	33	28	26	34	25	47	32	57	48
TACTCTGTGGTCTGGT	alt_5163_upstream	3	7	1	3	3	2	10	1	7	3
TTGCTCGGGCTCGTCA	ref_5163_upstream	7	15	13	5	18	14	17	11	22	12
GGCAAAGCCTGATCGC	alt_5163_upstream	15	29	21	18	34	22	27	18	28	28
CCTCGTCAGGGGTATT	alt_5163_upstream	9	8	10	3	12	1	14	4	14	4
TATCAAATTCTCTTGT	alt_5163_upstream	27	47	24	17	48	20	58	24	47	20
GCGCACTTAAAAAGCC	alt_5163_upstream	13	26	17	5	13	12	25	11	41	8
ACGTTCTTTGGTTGTA	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCTGGGATTTTGG	alt_5163_upstream	8	0	1	2	1	4	4	3	2	2
GCAGAGTACGGGCCTG	alt_5163_upstream	14	15	13	10	30	11	25	12	13	17
TTCCATCTTGCTTGTA	alt_5163_upstream	9	11	10	5	23	14	20	4	17	12
TTAGTCCATCTACCGG	alt_5163_upstream	13	21	8	19	20	19	27	17	19	15
ATCTCCGGCTTGCCGG	alt_5163_upstream	32	70	50	38	63	37	74	29	52	31
ATACAGGAGTGAACGT	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTATTCGGTCGT	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCAGCAGCAGGAC	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
AAATATAGATCACCGA	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTCTTGGTGTATT	alt_5163_upstream	18	40	26	21	37	22	33	23	30	25
TCCTAGCTTATCAGCG	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
TACCATGTACGTTATG	alt_5163_upstream	35	55	45	26	54	27	62	39	73	21
CAGGATGCCGCGGCAA	alt_5163_upstream	34	36	26	24	51	31	42	21	39	23
GGGTAATTTCACTACC	alt_5163_upstream	19	17	25	20	31	15	40	20	27	22
GGTATAATGAGACCAC	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
GGGACTATCTACTATA	alt_5163_upstream	9	31	15	20	24	11	24	7	22	9
GCTCCGCCTTATCTAT	alt_5163_upstream	27	57	48	33	60	30	67	25	72	31
CCTACAATGACCATAA	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGCACTGCTCGGA	alt_5163_upstream	19	13	17	8	13	10	16	12	14	8
TAGGTCTGTGGAGGGA	alt_5163_upstream	6	12	7	5	3	5	5	6	7	4
TCACTACCAGACCCCT	alt_5163_upstream	12	12	19	17	12	10	14	7	21	15
CCGTCATTATCATTAT	alt_5163_upstream	30	76	31	38	92	27	83	31	78	24
TCATTACGTGCATCTG	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCCACTATGGTCTGCC	alt_5163_upstream	15	32	23	19	29	30	29	19	42	18
TGATTTCAATGAATAC	ref_5163_upstream	46	43	39	26	55	34	70	32	44	30
TTCAGTAAGGGCGCCT	alt_5163_upstream	7	23	20	9	24	8	17	5	23	6
TTACTAATGTCTATAA	alt_5163_upstream	24	45	26	30	22	22	44	16	35	21
ATGGATGAGGTTAGCT	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
GTAGAAAAACGGCAGG	alt_5163_upstream	17	34	42	19	41	26	40	13	35	22
CGGCAATGCCCCGTTC	alt_5163_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGGGCTGCCTCTT	alt_5163_upstream	8	45	13	9	52	10	39	7	52	14
CCGCCTCGCCCCTATA	alt_5163_upstream	35	192	33	38	204	22	204	36	247	17
CTATCTGAAGGTGCAC	alt_5163_upstream	33	57	45	37	74	34	69	43	70	28
TCTTCTCTGGATCTAC	alt_5163_upstream	8	10	3	5	7	6	7	2	10	7
CATCTTTTACTTTTGC	ref_1359_missing	13	23	11	16	22	11	19	7	20	5
TGCATACGATATGTTT	ref_1359_missing	2	4	1	1	6	1	4	1	7	3
AGCATACGGAATATAT	ref_1359_missing	1	3	1	1	1	0	7	0	2	1
TTGATCTGTTCTGCTC	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
CGTTGGCGCTAGAACA	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
TGCCCCGGTTAGATCT	ref_1359_missing	68	121	81	62	136	62	118	83	118	72
GATAACCCTTAGTTTG	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
TACTAATCATTCCCGG	ref_1359_missing	38	62	47	27	71	36	73	28	76	27
CTAGCTATAACCATTC	ref_1359_missing	14	40	24	27	38	31	44	26	54	25
GATTAACCTTGAAGTT	ref_1359_missing	4	8	2	3	4	2	6	2	8	1
GCAGGTGTGCTGTGCC	ref_1359_missing	14	32	13	22	45	4	57	17	32	14
GTGCTCTGGTTATAGA	ref_1359_missing	30	52	52	45	51	29	45	25	62	27
CCTTCTTGCACTGAAT	ref_1359_missing	20	63	33	30	57	21	65	26	82	13
ATCTTTCAGCGAGCTT	ref_1359_missing	19	61	20	30	45	22	42	26	45	17
GTAGGTGTGGGGATAT	ref_1359_missing	4	23	18	8	28	7	29	14	23	6
GAGTTATAGAATGAGT	ref_1359_missing	29	28	25	14	30	19	40	18	29	12
TGGGTTCCAGGCTGGC	ref_1359_missing	5	14	6	3	13	7	5	1	5	8
GGTCATTTGGGATGCC	ref_1359_missing	116	224	132	113	220	97	260	93	231	86
CTTGTTCTTATTTCTC	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
CTGTAAGTCGTTTCAA	ref_1359_missing	66	141	76	71	128	70	130	44	126	58
GGTAGTGTAAAATTCT	ref_1359_missing	0	1	0	0	1	4	0	0	0	0
ACGGGTCCACGACTAT	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
GGGATGGGTGGGCCCT	ref_1359_missing	7	19	18	12	20	9	22	19	32	10
TCAGCAGCGGCCAAGT	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
CGATAGATATAAGCCT	ref_1359_missing	2	0	0	1	2	1	7	1	6	1
AGTACGGAGTATCGTA	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
GATAGATACGTCTTCA	ref_1359_missing	95	196	105	84	205	82	194	62	229	100
TGAAGTCAGTGATGTG	ref_1359_missing	16	38	29	18	34	19	58	26	43	20
AGAGATGACATCTAGT	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
CCTCGCGCCGAAGTCA	ref_1359_missing	13	11	18	5	33	15	23	9	30	7
CACAATTGCGGAGGTG	ref_1359_missing	83	138	76	74	137	63	160	79	138	54
CCGTTTCCGCGTGTCA	ref_1359_missing	11	42	12	17	50	14	38	21	21	16
AATACCGTATCATCGC	ref_1359_missing	11	20	6	12	22	5	16	7	27	9
CTTCACGGACGTCTTC	ref_1359_missing	136	191	189	159	237	156	251	144	242	147
TATTGATAATATCACA	ref_1359_missing	49	81	37	31	76	45	73	34	78	34
TTGGTTACGCGGTATC	ref_1359_missing	48	87	60	41	81	59	85	47	74	40
CGCTATCCTCGGCATC	ref_1359_missing	10	12	11	7	13	8	8	9	19	6
TTAAGTACTATTGAGC	ref_1359_missing	10	14	21	10	27	12	22	15	22	2
GTACGTCCTTGGATGA	ref_1359_missing	28	38	31	28	24	25	27	24	33	21
TCTGACATCCTCCGAA	ref_1359_missing	78	129	92	59	122	64	146	70	131	67
GAAATTTATATCCGCT	ref_1359_missing	0	2	0	0	0	0	0	1	1	1
CCATTATCTATCTAGA	ref_1359_missing	0	0	0	0	0	0	0	0	0	0
ATGTTGATACTCGCAC	ref_1359_missing	16	33	29	22	54	33	44	26	54	24
ATAAAAACGCATTCTT	ref_1359_missing	34	54	56	52	50	33	79	32	59	32
CAGGATGTGAAGGTTC	ref_1359_missing	15	40	25	19	36	23	39	14	35	21
TAACGCTTGGCGCTCC	ref_1359_missing	11	33	19	25	17	18	33	8	37	15
CTGTCTCTGACCTGAA	ref_4372_fdr	12	16	15	18	29	11	22	20	15	12
CCTGTCCGGTTTTGTT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
TGATATCCACATTGTG	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
GCTAACTACGTTTACC	ref_4372_fdr	10	12	6	4	9	9	13	6	10	10
CACGCTTACTTTTCAC	ref_4372_fdr	20	34	36	26	49	22	31	16	44	25
GCAGTATATCTTGCGA	ref_4372_fdr	13	34	27	24	19	16	30	14	27	21
ACAGGAAGATCAAGAT	ref_4372_fdr	5	4	9	4	6	8	5	7	11	4
AGACGCCAGTATTTGA	ref_4372_fdr	2	2	4	3	4	2	3	1	2	3
CTGCCTTCCCAAGCGA	ref_4372_fdr	12	31	24	17	24	22	16	22	26	16
GAACTCTCACGGAGGG	ref_4372_fdr	21	24	29	24	23	19	25	21	34	14
CTATTTTGCGTTCAGC	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
GCATAACGTTCAGGAC	ref_4372_fdr	5	5	5	3	3	6	2	3	11	2
GCGCCAGATATTCGTC	ref_4372_fdr	22	38	27	20	29	24	34	20	32	21
AATACCAATTCTATAC	ref_4372_fdr	2	4	4	4	3	5	3	5	12	1
CTATACCTTAAGTGGA	ref_4372_fdr	10	5	6	1	12	11	11	2	7	7
CTCACATAGTCTGATT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
GAGTGTATTTGGGCGG	ref_4372_fdr	41	61	67	38	56	56	55	49	42	29
AATTATTGGCTCACTC	ref_4372_fdr	32	28	20	12	33	19	27	18	33	17
AACTCTGTATATAGTG	ref_4372_fdr	27	30	23	22	34	22	31	17	34	23
GTTTGAGAGGTAAGTT	ref_4372_fdr	1	0	0	1	0	0	1	0	0	0
GATCATCTACGATTGT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
TAACCTACTTCGGCTG	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
TTACTGGTCGATGGGT	ref_4372_fdr	23	32	49	21	45	32	35	36	26	20
GTTTATTATATCCAAT	ref_4372_fdr	35	24	23	11	30	21	26	17	24	12
AGGGAGACTTCCACTG	ref_4372_fdr	16	26	11	13	27	17	19	10	16	6
ATTAGAAAGTATTTAA	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCTCAGGTAACTG	ref_4372_fdr	7	11	7	6	8	12	12	8	14	10
TTGCACCGTTACGAGG	ref_4372_fdr	52	75	65	49	51	58	99	53	77	52
TCTTAAGCTTCTACAG	ref_4372_fdr	7	19	13	7	19	2	16	4	9	8
TCTCTGCACGTAAAGC	ref_4372_fdr	10	69	21	29	48	13	63	33	67	29
ACTTTCTAAGATGCTG	ref_4372_fdr	10	10	16	10	16	8	18	14	14	5
TCCAATGTGCCGATTA	ref_4372_fdr	37	65	41	38	51	23	47	44	59	28
CTCTTGAGTCGTCAGT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
CAATGGTCATAAGATA	ref_4372_fdr	0	2	1	2	1	3	0	1	1	2
AGAACAGTTGACCACT	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGAACCAACAGCG	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCCCATCGGAAGC	ref_4372_fdr	34	50	64	49	35	44	45	51	76	51
CAACTTGTCCAGTAGC	ref_4372_fdr	4	7	5	4	10	6	8	4	11	2
TAAGGGTCCCCGCCCA	ref_4372_fdr	6	13	8	10	15	7	14	10	8	4
TGAGAAACGAACTGCA	ref_4372_fdr	34	45	40	30	52	49	34	36	48	41
TCGTTCATCCTGCCTC	ref_4372_fdr	20	17	12	17	8	10	18	10	19	15
CCCAACTCCGATACTG	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGCAAGCTGAGTA	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
GGTGACTCGTGTGGGT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
TTGCATTCCTTTTCTG	ref_4372_fdr	20	26	34	14	31	19	40	25	23	16
GACTGCAAGTGATTTT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
GCCACAGTTTTCGGGC	ref_4372_fdr	9	22	17	11	10	6	21	11	17	8
TTGACGGCGTTTAATT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCAATCAACTGCC	ref_4372_fdr	40	60	35	34	67	25	51	38	65	37
CTCTTGCTTTGTAGTT	ref_4372_fdr	66	76	88	50	92	56	86	56	75	58
TTTATTATTCGTTCGT	ref_4372_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCCGACTGTCAGC	ref_4372_fdr	7	2	3	4	10	4	6	4	8	1
CAGGTTGGACTAACCC	ref_4372_fdr	1	7	6	4	12	2	7	2	8	7
CCCTCAGGACATGGAC	ref_4372_fdr	11	13	5	2	16	9	10	7	11	2
TGATTGAGCTTCAGAC	ref_4372_fdr	20	30	34	24	45	37	46	28	45	26
CGTGCTTCTGTCACAG	ref_5887_new	11	6	6	2	11	8	13	9	10	5
CTTGGGGGGTTATATT	alt_5887_new	25	36	48	41	44	20	47	21	40	35
CTCTGGGCGCAATTTG	alt_5887_new	20	27	25	16	28	10	25	8	16	16
TGTTGTGAACGAGTGC	alt_5887_new	69	73	79	58	75	67	95	65	75	54
ATCTGTGCCACTGGGG	alt_5887_new	22	35	27	31	43	25	40	23	53	22
TGGTTCTTATGGTTTA	alt_5887_new	8	5	3	2	9	4	4	4	10	4
GTGTTTCCTTCATACC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
TATGAGCTCTGCGGCT	alt_5887_new	2	6	13	5	9	2	7	6	10	4
GTTATCCCATGTAAGA	alt_5887_new	5	9	18	12	8	6	11	8	9	5
CTTTTTCTTCGGTTTC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
GCGTGTGTTGCTACAC	alt_5887_new	39	48	51	37	53	35	43	29	64	32
GTGCGCCGTGCTTGCA	alt_5887_new	31	35	32	20	37	30	32	23	26	14
TATGTCGAAACGTATT	alt_5887_new	11	4	8	7	6	6	3	5	12	6
TCAGCGCAATCTGGCG	alt_5887_new	0	0	0	0	0	0	0	0	0	0
TGGGCGTCCATGCTAT	alt_5887_new	76	73	80	59	116	62	66	70	106	67
TACCACTGCTCGTTTC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
GCGGTCACGACATGCA	alt_5887_new	1	4	2	1	5	6	5	2	1	2
AGGTCACAATCCTTGA	alt_5887_new	0	0	0	0	0	0	0	0	0	0
AATTTTCACCTCCGGC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
TTCCCCATTCTCCTTC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CTGACTCCGCTATTTA	alt_5887_new	4	7	6	9	9	3	3	8	9	3
CTGCTTAGTACGCGCC	alt_5887_new	78	88	76	58	100	53	92	66	92	61
CCTCATGCTTAGAAAT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
AGGGTCGCATTGCGAA	alt_5887_new	0	0	0	0	0	0	0	0	0	0
GCCTTTTAGCAGCGTA	alt_5887_new	12	16	15	18	24	22	17	23	19	10
GTTCGGCAATAGGCTT	alt_5887_new	23	42	30	23	19	23	37	24	43	15
TAGGAGGCCTATCGTT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CCCATAGGAGTAATAT	alt_5887_new	33	52	48	47	43	35	61	32	60	44
ACAGGGGACGTGAGGC	alt_5887_new	12	16	14	9	15	11	20	11	16	5
TGGTCCTTATTCCAAT	alt_5887_new	45	50	63	37	60	37	46	46	43	43
TATATGTGTGGCACGT	alt_5887_new	7	9	18	7	10	11	19	7	7	13
CACGGATGGACTATGA	alt_5887_new	14	10	19	15	19	11	20	16	12	10
GTCTTAGAAAATTTCA	alt_5887_new	35	51	41	45	40	33	41	45	42	27
CGCGCCCTCGCGCAGG	alt_5887_new	106	102	121	97	114	100	110	78	119	87
CCATTACGGGAGCCAC	alt_5887_new	6	13	15	19	26	9	20	10	20	9
TCCGACCGTTTTCCTG	alt_5887_new	4	1	3	4	3	4	3	0	5	2
ATGCACTGGTTCACAA	alt_5887_new	10	28	25	25	41	16	37	21	33	17
AGGTATGGGGTAACGC	alt_5887_new	38	39	36	31	44	33	41	29	41	32
GTCACCTTTTGCTTCT	alt_5887_new	45	56	73	53	71	47	72	60	61	48
CGGGTGCCCTTTTGTG	alt_5887_new	0	0	0	0	0	0	0	0	0	0
GCTTATGATTTTGTTC	alt_5887_new	27	29	37	33	27	25	35	24	28	18
ACAGTAGAGTGTATGA	alt_5887_new	4	8	7	7	17	8	10	7	5	1
CATCGATACGCAGAAC	alt_5887_new	75	98	87	44	103	68	89	54	110	51
ATATTACACAGTGGTT	alt_5887_new	30	35	44	26	54	26	40	25	39	21
GCGAGCCAGTCACGCC	alt_5887_new	7	9	5	5	12	4	6	2	12	2
TTGATCCGTATCCCTG	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CGTCGGTCTGGACACT	alt_5887_new	125	212	151	104	235	121	262	99	243	96
CGATGCCCTCCATCTG	alt_5887_new	23	27	19	27	23	20	23	17	39	27
GCTCTAGCTATATCAT	alt_5887_new	23	19	32	21	28	25	35	30	39	22
AGAGGTGCCGTGGAGG	alt_5887_new	0	0	0	0	0	0	0	0	0	0
TTTTAAGGAGCCGGTG	ref_5887_new	26	43	31	28	32	26	39	25	42	23
TTCTCTGACGTCCCAT	alt_5887_new	20	27	37	29	52	27	41	20	51	29
CTTCTTGTTTTTCGGT	alt_5887_new	55	81	75	68	71	65	72	59	77	64
TGGGTGTCCATGCTAT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CCGCTACGCTTTGTCC	alt_5887_new	9	15	6	11	5	12	18	7	14	7
GCTGGTAATCAGCCTG	alt_5887_new	26	21	36	30	33	23	22	19	36	22
CATTATCTGGGTCGTA	alt_5887_new	0	0	0	0	0	0	0	0	0	0
ATGTCGGCAGCGGCTC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
GTGAGGCGCTGGTGAC	alt_5887_new	5	4	13	4	6	4	2	8	18	5
TTGTGTATTTTAACAC	alt_5887_new	3	7	6	2	8	3	8	2	7	2
GTGAAGGATACAATTC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
ACTTTTTGTAAAGTTC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CATAGGGTAGCCAGCA	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CAGCCGGATTCCTCAT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
TCTCGTTTAGGAATGG	alt_5887_new	13	15	13	10	15	16	14	20	17	26
CATTCATAAGCTCTCA	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CACGATTACTATGTGG	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CAGTTGTGCCGATATA	alt_5887_new	15	36	20	17	19	7	22	20	18	9
GTTCTCCGTTACTGTA	alt_5887_new	26	29	32	21	29	29	41	24	45	30
AACATGCGGTGTTCTC	alt_5887_new	8	5	6	4	4	6	4	7	7	6
ACGGCATGTCCCCTTA	alt_5887_new	46	65	69	52	80	64	72	44	87	47
TGGTTTACAATAGTGT	alt_5887_new	7	11	11	14	11	6	12	12	15	5
AATTGTAATGGCATCT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CCCGTGGATCTAGAAC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CATTATCTGGTTGTCC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CACAAGGTGTGGCCTC	alt_5887_new	34	41	30	39	56	39	78	31	68	38
GCTTGACATGTTTTGT	alt_5887_new	26	24	19	26	28	26	32	23	32	23
GGCCCCAATCGGGACG	alt_5887_new	30	34	36	27	39	28	36	31	37	23
TTTCAGTCGTGCTGGT	alt_5887_new	10	23	22	16	17	15	23	7	29	17
ATGATCTATGCTTAAA	alt_5887_new	5	2	8	11	7	4	8	8	13	12
AAGCCAACTCGTATAA	alt_5887_new	0	3	4	2	4	0	5	6	1	1
TATAGGCGCCTGGGCT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
TGCATCACGTGAGGTT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CAGGTAGTTCTCGTAG	alt_5887_new	0	0	0	0	0	0	0	0	0	0
GCTGGTTCGTATATGG	alt_5887_new	0	0	0	0	0	0	0	0	0	0
ACCGATATAGGCTTCC	alt_5887_new	15	24	16	15	14	13	21	13	18	16
GTGAAGGCTGTCTTGG	alt_5887_new	17	21	28	28	33	27	26	19	30	20
AGTCGGAATCGATGAA	alt_5887_new	7	10	16	7	17	11	9	6	17	8
TGTGCCATCTTTGCGC	alt_5887_new	0	0	0	0	0	0	0	0	0	0
TCCTCAACACGTGTGC	ref_5887_new	89	141	102	73	125	90	141	94	142	62
ATGACAACGGAGTCGG	alt_5887_new	114	127	152	112	154	85	134	113	177	121
GGTTTCGTACTGATCG	alt_5887_new	1	8	3	5	1	1	1	5	3	2
TCTGACCCCGGGCTCT	alt_5887_new	0	0	0	0	0	0	0	0	0	0
CTGGAGATTGCGTTTC	alt_5887_new	68	88	67	57	67	61	93	49	103	55
TTCGGAACATCCCGGT	alt_5887_new	17	21	21	17	22	19	28	23	21	15
TCCGTGCTTCAAATTC	alt_5887_new	4	4	9	0	2	5	7	3	3	7
CATTCCTTTTTTTCGA	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTCATCAATGGT	ref_829_upstream	4	12	11	7	13	10	5	5	6	7
CTAACGGCATGTCTTT	ref_829_upstream	17	36	25	23	29	24	33	19	28	28
GCCTACTACCATAGGT	ref_829_upstream	19	30	17	20	39	16	31	16	27	25
CTGCTGGGGCATATAC	ref_829_upstream	66	92	82	66	106	49	114	57	84	49
CTAGAGTTCACACCTT	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
AAGCCGGAATTGCTAC	ref_829_upstream	11	26	17	14	26	13	22	20	20	11
AAGGCAAGTTTTCCCG	ref_829_upstream	7	4	8	9	5	8	5	2	7	9
CAGTTATTTATTCACC	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTGTGAATACATT	ref_829_upstream	9	20	18	12	22	15	15	13	18	10
CGGCTTAAACACCTTT	ref_829_upstream	14	26	25	25	24	11	31	14	30	18
TGCATGCGAGCTTGCA	ref_829_upstream	15	17	16	14	11	15	11	11	18	11
CTCATAGGCTGGCTTA	ref_829_upstream	21	29	29	19	32	8	25	18	22	15
TGAATCTGTTCTTCTA	ref_829_upstream	54	87	74	72	95	60	93	60	84	64
ATTTACTTTCGTTCGC	ref_829_upstream	11	23	29	18	16	20	21	12	27	18
GGTTTGGCCTTCATTA	ref_829_upstream	8	9	10	0	10	6	5	8	9	2
GTTTTCGCACCTAATT	ref_829_upstream	23	45	32	19	41	25	43	22	41	20
ACCCCGCCCTATTGTC	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TATTAGTCGACAGGTG	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCTGTACTTGAGA	ref_829_upstream	32	29	29	28	27	21	27	21	28	27
AAGGGGTGTGGACCCC	ref_829_upstream	22	35	15	28	21	13	33	22	29	16
CTATGCCGTCAGTTAT	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAGTCTCGCTATG	ref_829_upstream	110	178	128	98	172	108	162	98	181	133
TACAGGGCCCTGCGAA	ref_829_upstream	41	62	49	52	66	39	61	37	74	35
CAACCGTCAGCGTCTT	ref_829_upstream	5	6	6	5	6	7	14	8	16	5
CGAATCTGCCGCTGAA	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TACAGGCATGGTCCTC	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCGGACTGGTCAC	ref_829_upstream	20	22	15	11	20	12	24	13	27	8
GTGAGCGTTTTGGCAG	ref_829_upstream	45	80	52	39	58	38	57	45	62	37
TAGCGGTCCCTTGCTA	ref_829_upstream	10	12	11	7	13	4	13	2	9	11
AGCAGTGTTGTCTGTA	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTGTTAGGTTCTG	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
CCTAATTTAAGGTTCC	ref_829_upstream	4	5	2	1	6	2	7	1	9	0
ACGGTACACATTGTCA	ref_829_upstream	18	53	43	36	44	34	61	26	58	39
ACGGTTAGGGCCGCGT	ref_829_upstream	8	4	10	6	4	7	4	1	6	2
ATGGGTCTAGGTACTT	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCATCTGGCGAGG	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
CATCGATATAAATACT	ref_829_upstream	23	32	16	28	31	20	46	28	48	23
ATTATAAGTACAGCAA	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
GGAGGAACTATTCAAT	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TTATTATGTATGTTCT	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCCTGTCTGCCGT	ref_829_upstream	24	28	28	25	21	18	28	12	22	22
CTTAGCCGGCCTAGTC	ref_829_upstream	15	16	22	10	21	8	22	13	11	18
TTAGTCATTCATCAGC	ref_829_upstream	3	9	16	7	8	13	16	2	7	1
TACAGTTTGAGCTTGC	ref_829_upstream	28	41	21	16	26	28	53	21	33	22
AGTGGGTACGTGGGTC	ref_829_upstream	105	151	98	95	118	102	162	109	146	74
TTCTCGCCGCGACTTT	ref_829_upstream	31	40	54	46	49	38	55	34	64	39
ATGGTCTCTCTTCACG	ref_829_upstream	18	11	22	13	17	12	24	10	31	12
TCGGGTGTTACATCAA	ref_829_upstream	19	28	21	12	28	20	32	23	30	19
AAGGCTAAACCCTTAG	ref_829_upstream	27	40	58	47	50	30	47	22	52	29
TGCCCCACTGCATGCC	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGCATCGATGGAA	ref_829_upstream	25	46	28	32	42	24	33	24	59	25
TTTTGGATTTGGTTTG	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGCAGCGGTTCGT	ref_829_upstream	7	26	8	18	18	14	18	12	14	9
GATGAAGCTTTTCGCT	ref_829_upstream	6	6	9	5	7	5	15	7	9	7
CCTCCTATCCCTGGCA	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGCAATTAGTGCA	ref_829_upstream	0	0	1	2	3	2	3	0	2	1
CTTCCAATTAATTCAG	ref_829_upstream	23	39	28	29	46	30	40	29	64	21
ACCGCCTTTCGATCTC	ref_829_upstream	27	57	28	27	44	33	56	42	74	30
GGTAAATACTGTTACA	ref_829_upstream	27	63	43	25	63	48	58	52	59	31
TAGCTTATATTAGATT	ref_829_upstream	72	93	71	72	93	53	92	59	103	73
GCTATTTCGTTGTCAC	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTTTACAGCTAAC	ref_829_upstream	7	6	6	11	4	3	11	6	8	4
CCGCCCCGGCCGCTTC	ref_829_upstream	9	20	12	10	12	6	10	12	19	9
TCTGAAGCTTTGTTCG	ref_829_upstream	11	26	16	19	23	15	19	19	18	9
TGAACCGTCAAGGTCA	ref_829_upstream	105	128	153	118	152	114	138	112	157	100
TTCCAGCGTATATCTC	ref_829_upstream	9	28	15	13	17	21	11	5	17	10
TTATTGTGTTCTTCCA	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
CAAATGTCAGTATATT	alt_829_upstream	47	59	59	39	66	47	75	46	61	50
CATCCCGCCTGGGGAT	ref_829_upstream	162	213	165	184	238	149	249	119	217	137
CTGTGGCACAAGATGC	ref_829_upstream	44	68	78	52	70	49	59	44	75	46
AGCATTTAAACGCCTC	ref_829_upstream	27	33	48	37	51	31	55	24	53	12
CGGGCCTACAGTTGTA	ref_829_upstream	20	47	40	20	59	17	68	23	60	12
CGTCTTTGCGAAAGCT	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGTATTCAAACAC	ref_829_upstream	0	0	0	0	0	0	1	0	1	0
AGATTTTCACCCCGTG	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
AAAACCCGCCATACCA	ref_829_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATGGGAACACGG	alt_829_upstream	0	1	7	5	2	1	4	1	1	2
CTTGGTTACATCCGTT	ref_829_upstream	22	42	29	37	60	23	33	24	29	18
TTTCGTTCTACCGGAT	ref_829_upstream	41	54	35	30	50	32	64	31	48	23
TGATGGCCTGACAGGA	ref_829_upstream	2	6	7	4	8	3	9	3	6	4
TCTTACGGCCCAACCA	alt_1617_RC	29	31	15	29	31	20	26	18	25	17
ACTCGGAACAACGCCT	alt_1617_RC	25	27	22	24	39	28	25	23	22	18
CGTACCCTTTGAGTGG	alt_1617_RC	76	81	110	93	96	63	81	73	101	62
TCTTAAGTCTGAGATA	alt_1617_RC	232	294	263	261	270	200	341	204	356	231
ATCAGGGTGACAGGCA	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
CATGTAGCCCAACTGG	ref_1617_RC	38	61	49	33	73	29	84	38	53	28
CGGTATCTTTTCACGG	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
GTCATCTCCTCCGATT	alt_1617_RC	0	1	3	7	2	3	4	5	3	4
ATTCAGATATTTCATA	alt_1617_RC	66	92	107	86	87	64	85	73	97	74
TATGGGAAAGTCTCGC	alt_1617_RC	10	32	26	27	38	27	43	26	27	18
ATTGGCTTTCCTCCGC	alt_1617_RC	43	52	39	45	50	35	45	47	63	34
AAACCCTGTTTACTTA	alt_1617_RC	3	6	6	6	8	3	8	3	5	4
CGACGCTGGTGCTTGC	alt_1617_RC	10	15	10	10	22	9	19	8	18	6
TCGAGATGTGTGCTTT	alt_1617_RC	28	18	22	19	18	15	29	17	29	13
GGTGTTGTTGCAGCTC	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
ACACCCACGCACATGG	alt_1617_RC	14	25	14	7	29	11	24	15	39	13
ATGCTCGGGCCCTGGT	ref_1617_RC	20	35	29	28	21	24	42	20	38	33
TTCACGATGGAAGTTT	alt_1617_RC	40	30	40	26	44	37	44	31	50	31
TATATTGCCGCCCATA	alt_1617_RC	15	8	13	15	9	6	20	7	14	10
AAGGATACTCCTGGAG	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
ACATTTTGCTGCTTTG	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
CGTGCATACCCGGTGT	alt_1617_RC	41	40	41	30	40	38	31	41	47	33
TTTTATTGTTGTAGGG	alt_1617_RC	190	260	286	221	276	240	309	194	269	189
GCATAACTCTACGGAA	alt_1617_RC	34	35	38	26	39	43	36	28	34	31
TACTCGTTAACTTAGT	alt_1617_RC	41	79	70	52	86	47	88	53	59	50
AGTTGTTTATCAGCAT	alt_1617_RC	23	37	25	32	38	37	32	22	33	35
AACTTTCGGTGGTATC	alt_1617_RC	63	75	107	90	81	72	86	68	103	64
TTGGAGTAAGCCCGCA	alt_1617_RC	7	5	2	8	4	4	6	6	1	4
ATTCGTGGGATTCCCC	alt_1617_RC	3	10	4	3	3	2	4	6	3	2
CTTTCGAGCCCCGCGA	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
CACAATGAATATTCAC	alt_1617_RC	20	30	26	19	23	23	23	28	17	19
GGTAGGCTATCGCGGT	alt_1617_RC	26	20	24	21	26	18	21	20	32	13
CTAGAGATGTAATCGG	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
TAATCGTTGGTTTGGG	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
CCAAGGCCATATCGCC	alt_1617_RC	31	31	35	19	32	24	30	25	34	21
CATTATGGAATAAACC	alt_1617_RC	6	1	1	6	2	2	3	4	1	1
GCCTATCCGGGACTTC	alt_1617_RC	48	42	47	49	62	32	48	36	56	46
GTGTCACCCTACACAC	alt_1617_RC	35	21	18	17	33	16	27	25	27	11
AGCACGGGACTACTTG	alt_1617_RC	5	10	3	3	6	5	5	7	8	1
TACTATTCTCTCGAAT	alt_1617_RC	36	39	40	41	62	31	44	41	39	27
CGTCCATAGGCAGTTT	alt_1617_RC	13	24	17	18	30	18	17	20	29	27
TTCTTCCCCGTTGTGT	alt_1617_RC	9	34	17	20	37	8	40	13	50	14
TGTTCCAAAGTAACTA	alt_1617_RC	25	27	26	23	29	28	23	25	31	17
CGGCTTCTATCAGCTC	alt_1617_RC	45	53	62	45	53	39	61	52	77	35
ATATGCGGATAAGTAC	alt_1617_RC	70	91	85	73	105	74	85	53	109	87
TTTGGTTGTGTTCAAC	alt_1617_RC	36	52	42	34	54	36	60	24	65	26
TGGCGCCAGTTCTGGC	alt_1617_RC	125	155	140	117	130	109	114	159	119	122
TGTTTGCTCCACTACG	alt_1617_RC	10	8	13	12	20	11	11	9	14	6
CGTGTACAGTGTTTTG	alt_1617_RC	9	11	11	9	9	8	10	6	15	3
TCCTGACGGAACTTCA	alt_1617_RC	83	136	105	96	108	97	103	86	130	90
TCCGCTTCTACCGTTG	alt_1617_RC	12	22	24	22	19	12	24	17	25	15
GAGGCAATACACATAC	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
TCACTCGGACATCACC	alt_1617_RC	37	35	44	36	31	36	40	24	50	24
TGGTCTTCTAGGGAAT	alt_1617_RC	20	25	18	21	20	18	16	26	35	23
TAGGGATGCTCTTTCC	alt_1617_RC	7	15	27	22	25	16	24	10	26	18
CAACACAGCGTACATT	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
CTAACCTTCCACACAA	alt_1617_RC	36	20	27	37	35	27	44	23	25	35
TTTATGCCCTTGCTCT	alt_1617_RC	31	21	34	23	20	23	26	23	21	23
TGTTTAAACCACTCAG	alt_1617_RC	40	45	35	30	42	20	33	34	43	27
TTCTTATCTCAAGGTA	alt_1617_RC	32	28	43	42	27	36	33	52	26	32
TTATGATGTTACACAC	alt_1617_RC	64	83	96	63	100	62	88	69	98	60
TCAACTGCAGTTAACC	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
TTTGATAGCACTAGCC	alt_1617_RC	8	9	16	5	8	9	7	6	9	5
ACTTGAATTACTTACA	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
GGGTTAAGCCTAGTCG	alt_1617_RC	67	58	65	62	57	63	60	53	88	38
ACCTGGTAGTGCAAGC	alt_1617_RC	3	3	2	2	4	1	3	1	1	2
TACATTAAGCTCCGTG	alt_1617_RC	32	43	23	28	30	42	50	35	41	43
GCTGATGAGTTAATGT	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
TCCCTAATCGCACTGC	alt_1617_RC	27	28	24	19	23	17	30	20	24	16
GATCACCGCAGTCTAA	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
CATCCGTAGGAGTCAC	alt_1617_RC	0	0	0	0	0	0	0	0	0	0
CAGTTGTTCCGGCGCG	alt_5336_fdr	248	123	280	235	112	217	117	230	127	221
GAGCCCCCCATTCTTT	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
AAGCCACTCTGCACTT	alt_5336_fdr	174	87	191	149	117	162	102	164	107	141
TCGTGTGCGTCCCGTA	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
CTATTTCACTTGGCAC	alt_5336_fdr	108	48	131	89	46	95	43	118	28	110
TGAATTTTAATCGGTT	alt_5336_fdr	127	42	149	112	49	117	53	118	50	109
TCACGCTCATTTTAAG	alt_5336_fdr	71	28	85	65	39	75	31	72	42	74
CTAAGGCAGTGATCTC	alt_5336_fdr	15	11	15	7	4	11	6	18	11	12
ACTGCTATTTCAGTTT	alt_5336_fdr	14	5	16	14	1	15	6	12	7	15
CCGTTTAGTTCTTCTG	alt_5336_fdr	84	24	73	71	30	59	25	60	31	66
TTATGTGACTATTACG	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
AAAGTTAGAATCTTGG	alt_5336_fdr	13	3	12	13	5	16	8	17	3	15
CTATATTCTCCAGGTG	alt_5336_fdr	146	55	155	84	55	131	48	104	51	133
GTACTAAATAGGAACT	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTCTTACGTTGAC	alt_5336_fdr	190	84	208	132	75	133	65	157	90	180
CCATCGACGGGTTCCG	alt_5336_fdr	33	13	53	40	20	34	19	25	17	29
AATTACATAAGTTTTT	alt_5336_fdr	97	31	109	72	45	86	52	76	35	79
AGCTTGGACAAGCCTA	alt_5336_fdr	151	54	181	137	57	129	60	143	62	147
CCACTCGTATGCCGTG	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
AAAAGCGCCGGATATC	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCAATACGATCGT	alt_5336_fdr	202	109	278	199	134	218	94	164	115	167
AAACTCCCAAATCTGG	alt_5336_fdr	58	38	71	48	22	62	51	50	43	50
AGCTTTTTCCAGAGGA	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
CGTATACAGGATTGCC	alt_5336_fdr	346	114	397	271	120	293	148	314	167	333
GTGGCTAGCAGCGCCG	alt_5336_fdr	13	7	13	5	5	10	8	12	7	16
AGTACGGCGGTGCCGT	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
CAGGCGTCGGTAGGTC	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCGCAATGTTTTT	alt_5336_fdr	117	32	133	100	31	102	48	91	45	114
TTTGCTATGACATAAG	alt_5336_fdr	403	180	488	361	197	371	192	314	201	344
CGTACAGGAGAACTAG	alt_5336_fdr	20	5	32	19	13	19	6	19	4	20
TTCCGCAAGCTGGTAT	alt_5336_fdr	16	7	17	17	7	19	10	13	5	15
AGAGTAGTTTCCCTTG	alt_5336_fdr	141	60	134	98	38	90	44	113	53	98
TCTTGTCGACCCTAAC	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
AAATGGCAGCCGACGG	alt_5336_fdr	46	12	40	31	19	33	14	28	19	34
ATTTTAGCTCTGGTTT	alt_5336_fdr	23	10	22	15	4	16	4	20	8	26
GCTTGAAGTAGGATCG	alt_5336_fdr	6	4	7	6	1	7	2	3	1	4
CCAGGCTATTAATGAC	alt_5336_fdr	41	15	37	30	14	30	16	27	24	38
GCCTACTTGAAAGCTA	alt_5336_fdr	75	19	47	41	22	59	25	57	29	63
GATATTGATTGCTCTT	alt_5336_fdr	64	23	84	69	19	50	19	72	24	58
ATGCTAAGGATTACGT	alt_5336_fdr	32	23	51	41	19	35	15	35	17	39
CCTTCGTCTCCAGAAA	alt_5336_fdr	14	42	20	14	38	21	47	18	61	19
TTTTCATGGTGGTTAT	alt_5336_fdr	122	59	178	115	59	137	55	148	49	119
ACGCTCTCGGAGTGTC	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
GGATCCTGGTGTCATA	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
GTAGAGAAAGAAGTGC	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGTTACGGCACA	alt_5336_fdr	19	5	10	19	2	15	7	21	11	20
ACTGTCTTCTTCCGCG	alt_5336_fdr	13	6	29	26	8	17	7	22	3	20
GATAACAAGATGATGG	alt_5336_fdr	5	4	8	5	8	3	9	7	4	4
TGCTTCAACACGTTCT	alt_5336_fdr	112	40	133	86	48	85	52	86	40	109
GGGCACCCCCAGGTGG	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCTCTGATCTCTG	alt_5336_fdr	61	20	108	52	22	72	17	49	31	59
AATATTTCGTTTTCCC	alt_5336_fdr	41	55	61	65	34	54	48	56	46	32
TTATTATTTCCTCAAG	alt_5336_fdr	75	35	122	69	45	96	41	108	41	79
GCGCTTGGGATTAGAT	alt_5336_fdr	166	65	206	151	66	156	69	153	71	136
GAATTACCTATTTCGA	alt_5336_fdr	193	101	235	160	98	178	83	177	76	177
ATAATAAGGCATATGT	alt_5336_fdr	51	28	48	29	21	46	20	37	19	35
ACCGTCCTGTTTCAAG	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTATAGGATTCCA	alt_5336_fdr	320	129	370	249	118	277	139	284	136	265
TCTGCGAGACCCACCT	alt_5336_fdr	65	12	71	50	27	72	30	75	33	69
CCAAGGACGAACGTGC	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
GACTTTCAGGTATCCG	alt_5336_fdr	55	18	62	49	17	44	14	47	16	45
GGGGGTGCTTAGTAGC	alt_5336_fdr	106	41	120	107	39	117	38	90	54	115
TTACCTTTGCGTCTCT	alt_5336_fdr	4	3	4	6	0	6	1	12	4	5
CCCTTTCTCGCGATCA	alt_5336_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTAGTTGAAGATC	alt_5336_fdr	90	42	105	93	41	81	41	94	58	80
GCTCTTGAATTATTGT	alt_5336_fdr	54	19	56	46	14	43	19	40	17	34
TGATTCACCGCCGAGA	alt_5336_fdr	147	41	143	87	52	102	25	91	45	103
GCCACCCGCTCATTGC	alt_5336_fdr	62	37	84	78	25	65	43	59	38	56
TTGTGAAGGCTTTTCG	alt_5336_fdr	12	2	18	10	4	13	5	9	6	19
TTTTAATGGGTCGCCA	alt_5336_fdr	5	4	19	12	2	16	2	12	8	20
GCCAGTAATTACTGGA	alt_5336_fdr	47	17	55	39	26	58	18	40	20	39
TGAATTTTTTCTGGAT	alt_5336_fdr	317	121	380	221	139	252	116	260	133	273
GCGGTGATAATATTCT	alt_5336_fdr	371	120	432	316	159	356	152	307	158	333
CGCTTTCCCCGGTCTT	alt_5336_fdr	55	34	75	60	36	59	33	53	35	51
GCTTCGTTAGGTCTTT	alt_5336_fdr	30	9	35	26	8	38	11	34	11	19
TTTATTTGACAAACCC	alt_5336_fdr	44	11	46	26	21	43	6	23	14	26
TCTGACTTTTATTTTT	alt_5336_fdr	14	5	11	8	3	7	10	14	13	2
ACTTGGTCGGGTCCCG	alt_5336_fdr	69	24	70	62	23	60	21	39	33	52
CAAGGCCCGCCTGCTT	alt_5336_fdr	118	55	166	93	43	99	38	121	56	114
CTAAAGCAGGTCTTCG	alt_348_missing	5	1	2	11	2	2	8	1	2	0
TACATTATTCCCGAGT	alt_348_missing	18	26	27	34	22	15	31	25	23	25
TACTGTGTCGGATACG	alt_348_missing	9	10	16	12	11	10	12	8	7	4
CTTGTAGATTTGGCAG	alt_348_missing	72	63	90	82	49	58	66	49	58	73
TACGTCACTTCCTCGG	alt_348_missing	26	33	23	29	25	21	29	12	38	30
ATGACGATCGCCAATC	alt_348_missing	75	76	84	61	48	66	77	77	74	67
CGCCGTCTCCACTGCT	alt_348_missing	0	0	0	0	0	0	0	0	0	0
GTGATTCGGTTACCAG	alt_1841_upstream	4	10	11	7	6	5	6	9	8	9
CGCGTCGCATCCTATT	alt_1841_upstream	200	110	277	184	131	182	129	202	139	182
AGGGAATATCAAACCT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CCGAAGCTGATGTTTG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
ATACAGTGTCAATTGG	alt_1841_upstream	48	34	40	41	38	47	46	42	47	44
TGGTCCAGAACAGGGT	alt_1841_upstream	12	13	10	10	9	11	8	13	10	9
ACGGGTTTTGCTGGGC	alt_1841_upstream	19	9	15	17	8	10	12	12	12	20
GTAAGCTTGTAGCAAC	alt_1841_upstream	14	8	21	12	9	12	14	15	13	17
TTTTAGTCATGGACAC	alt_1841_upstream	110	96	120	93	54	94	83	66	80	91
TTGGTTTTGATTACCG	alt_1841_upstream	36	35	58	42	40	22	33	32	46	25
TGTTTCTTAGGCTCTA	alt_1841_upstream	68	33	78	55	40	57	50	46	49	47
GTAGTACATTCCTGCA	alt_1841_upstream	59	53	35	38	52	27	63	37	61	28
ACTTGTTAATCGTAGA	alt_1841_upstream	169	108	215	186	98	150	104	150	116	154
CCTACCATGATACTAT	alt_1841_upstream	17	4	17	6	6	8	5	1	13	5
ACTATTAAAACCGCCG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTGTGAGAGTGTA	alt_1841_upstream	78	65	113	81	61	80	82	70	64	59
TAAATATGTCTTCCCT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CAACAGCTGGTTGTGT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTGGCTGGATACT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
GAGGGGTGCGGTCACG	alt_1841_upstream	28	18	29	26	21	29	20	31	20	24
TTCCGACGGTTCAGGT	alt_1841_upstream	69	39	82	75	55	58	57	64	38	66
GCCGCAAGTTGTGGCC	alt_1841_upstream	30	36	52	49	27	32	19	39	37	36
GTTTGGATTGTCTCTG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CTCCCACCATGACGGT	alt_1841_upstream	63	59	42	35	49	41	59	41	72	52
TACTGCCACGAGCAAG	ref_1841_upstream	1	2	5	3	0	2	1	3	0	4
GCGTCCGGATAGGTCA	alt_1841_upstream	77	74	115	111	59	115	67	97	73	100
TGTGATCCGATTTGAC	alt_1841_upstream	40	31	40	26	27	46	28	36	18	46
CCCCCGATGCTTGCCC	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCTATGATCAGT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTAGTTGATCCTT	alt_1841_upstream	154	96	175	180	90	125	86	121	99	127
TGGCAAGAAACTTGCC	alt_1841_upstream	69	57	103	75	59	98	56	64	56	81
AACGATGGCTTATCTG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGTAATTCCAATC	alt_1841_upstream	12	11	8	10	11	15	7	19	10	5
CCGCGTGCAACACGAG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
AACTAATCCATATCTT	alt_1841_upstream	15	11	27	25	14	21	11	14	14	16
TATCGTCTGGCTCGAT	alt_1841_upstream	10	20	19	28	10	29	17	15	16	13
TCAAGTTACGACCCAG	ref_1841_upstream	339	210	375	332	181	303	194	299	223	301
CCCAATGCTTTCACCT	alt_1841_upstream	97	65	113	77	77	70	65	76	73	71
AGAGTCCTCATGTGCT	alt_1841_upstream	81	55	101	82	63	71	55	76	64	51
TTACCGTATTCGCCCG	alt_1841_upstream	99	79	132	99	82	105	81	95	83	95
TCATTTGGCGCCATTT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
AACCTACCCAGTCATG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
ATTAACTTCTGTTCAT	alt_1841_upstream	17	6	18	17	6	18	12	9	8	12
TCACCGGGTCTTCGAT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTATCTACACAAC	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TACTGCTTTAGGAAAA	alt_1841_upstream	57	31	54	59	33	57	38	56	34	43
CCGTTCGGACCATAAC	alt_1841_upstream	4	8	14	12	2	9	10	11	8	2
GAGTCTGTGCTGATGG	alt_1841_upstream	88	51	93	94	57	79	61	88	67	83
GTCAGACCCTCTGAAG	alt_1841_upstream	16	18	23	18	18	25	20	24	16	16
TGCCCGGCTGTCACCT	alt_1841_upstream	47	42	62	46	37	39	45	50	46	48
CTGTAAGCTCCCTCAT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTGGTATTTAGTG	alt_1841_upstream	101	76	115	128	97	114	87	104	86	105
TAGGTATAAGCGATGG	alt_1841_upstream	229	149	329	268	173	240	190	251	146	237
TAATGTCAGGGATTAC	alt_1841_upstream	176	131	195	176	109	128	124	160	114	141
CACGGCGATTCTTCTC	alt_1841_upstream	8	1	9	10	3	9	8	4	8	3
ATCACGACGAGGCTGA	alt_1841_upstream	44	25	50	42	28	47	24	32	31	29
TATGCTGAGGAGCAAT	alt_1841_upstream	57	37	69	67	39	67	40	72	46	47
CATCTTGAGCCAGTAC	alt_1841_upstream	24	20	28	17	22	11	18	14	22	11
CTCCTGTATATCGGAT	alt_1841_upstream	84	39	96	90	76	90	66	104	67	78
GATCGGCCTGCGTTAT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCTGGCTTCACTT	alt_1841_upstream	57	58	74	70	39	67	43	44	51	71
GCTATTTTGTGTATTC	alt_1841_upstream	57	38	55	53	54	45	42	53	33	54
CAGTTCGCTAATTGTC	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCATTTTAAGGTG	alt_1841_upstream	44	28	70	59	32	49	21	37	40	38
CGCACATCCCTATGAT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCCCAGGCGTATC	alt_1841_upstream	0	0	0	2	0	1	0	0	3	2
TATGGATCAAGGGGCG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
AGACAAGAGAGTGAGT	alt_1841_upstream	50	36	46	50	17	37	26	37	21	41
TCGCTACTTCATGAGA	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TAATAGGCTGCGGATC	alt_1841_upstream	4	1	5	2	3	4	8	1	2	1
ATGACAGGCTGGGGCT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
GTGCAGGCTTTTTAGC	alt_1841_upstream	23	27	63	39	43	40	28	44	37	29
GCATGCCTAGCTAGTT	alt_1841_upstream	29	17	36	27	12	32	11	29	16	27
CGAAAGATGAGGGGTT	alt_1841_upstream	42	27	71	47	21	35	23	45	20	34
GCGATTAGTATCTTGA	alt_1841_upstream	7	3	4	7	5	4	4	8	9	1
TTCTCACCGGGTTCTA	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CCTGTTAGCCGGCCTT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCCAGTAAAATCC	alt_1841_upstream	4	9	10	12	10	9	15	4	11	9
TTCCCGTCCGGGTCCT	alt_1841_upstream	11	3	9	11	4	11	5	4	8	11
TGTCAATAATATAAGG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATAGAGTAGTGG	alt_1841_upstream	72	51	77	78	51	63	61	66	58	61
GCGTGTTCAACTTGTA	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CATTTCTCTAATATCC	alt_1841_upstream	32	18	43	34	17	33	23	37	29	15
TAAAGTGCCGATGTCC	alt_1841_upstream	123	97	145	117	79	116	72	91	93	95
TTGACTGGCGCGAACT	alt_1841_upstream	50	50	66	42	40	51	35	45	42	40
ATGTTGATCCGCTAAT	alt_1841_upstream	16	11	22	29	4	17	17	27	15	31
TCTGGTGTCAGAGCCT	ref_1841_upstream	76	53	92	80	46	68	53	62	45	67
AAGTCGGGATCACTTT	alt_1841_upstream	234	152	255	246	141	217	169	193	165	185
TCGACTCTGTCCGCTC	alt_1841_upstream	10	8	12	7	5	7	10	5	5	6
CATTTCCGTTTTCACT	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGCTCAAACTATT	alt_1841_upstream	20	4	22	17	15	20	14	17	10	11
TCTCCATGTACGTATT	alt_1841_upstream	70	43	90	67	39	47	49	49	46	46
TCTCCGTGTGGTATAG	alt_1841_upstream	113	105	132	96	93	105	97	85	100	92
AAAATCTTGTCAACAG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
AGTTATCCTTATCGCT	alt_1841_upstream	209	122	247	224	144	207	133	215	149	192
CATTCAGGTGTTTAAC	alt_1841_upstream	9	8	24	6	9	10	14	7	3	9
ACTTAGGTATCTGGGA	alt_1841_upstream	12	4	22	10	7	13	2	14	13	9
TAAATCATTCTTAGAG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CATCCTAATAGGGGGC	alt_1841_upstream	40	37	47	34	37	32	41	66	38	47
GCCTGAAATATCACCA	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTAAAAAAGTCT	alt_1841_upstream	140	113	155	111	79	124	120	89	132	113
TTTTTGAGCCCTTCCT	alt_1841_upstream	51	33	56	41	34	45	33	45	21	44
ATTAGTCGAAGTGTGT	alt_1841_upstream	37	28	44	48	41	44	34	51	36	37
GTTACAGGTTCCGGAG	alt_1841_upstream	138	101	161	99	106	115	120	111	120	120
GGTGTATAGCTAAAGT	alt_1841_upstream	61	54	73	64	46	53	49	63	55	60
TCCAGTAGGGCCTGCG	alt_1841_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAACCCTAGAATA	alt_1841_upstream	64	59	72	67	61	68	48	66	55	46
ACATTCCCCGAGGGTC	alt_1841_upstream	14	43	16	8	35	18	47	9	27	12
AAGTAATCATGGCTAC	alt_1841_upstream	203	90	235	171	90	191	112	182	105	178
GCATGTCAACGTATGC	alt_1841_upstream	17	6	22	17	7	17	5	17	16	14
GGAGATATGGGCTTTA	alt_1841_upstream	95	80	124	78	67	73	66	92	65	105
ATAGTGCATAATTGCC	alt_1841_upstream	34	27	39	26	23	22	29	25	20	33
TATAGGGATTCTTGTG	alt_1841_upstream	152	86	180	152	82	148	115	137	144	131
AGCTCATATTTCGCCG	alt_1841_upstream	73	47	102	69	43	85	45	87	64	76
GAATCTCATAGATAAT	alt_790_reverse	17	18	8	27	16	12	20	14	27	15
GTTCTCTGGTGTTTTC	alt_790_reverse	60	96	86	81	92	52	102	53	89	59
CGGCCGCTTGCTTTCA	alt_790_reverse	92	112	104	65	149	88	142	86	154	67
TTCCCCAATAGAATAT	alt_790_reverse	7	11	6	11	5	10	12	4	14	10
AGATACGTTCGGACTC	alt_790_reverse	42	67	63	54	70	48	78	50	105	43
TACAGTTTCATGCACT	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGCCCCCTGTCGT	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTAACAGCTTTCA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCTAGGATGAATC	alt_790_reverse	8	9	5	5	15	4	9	7	9	11
TGTATCCTGTTCGTAG	ref_790_reverse	11	41	26	21	26	19	26	8	30	20
TTTATTTATACTGCTC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TAGATGTTTGTTCCCT	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCACGTCAAGACA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
AACTGTTACGTTTGGC	ref_790_reverse	56	84	92	73	106	68	113	57	104	64
CTCGGAATTCAGGGGC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
GGCCAGGCCTCGTTAC	alt_790_reverse	25	31	29	27	42	17	42	23	43	25
TACGGGGCTCTTTGTT	alt_790_reverse	93	150	100	92	117	71	129	85	159	83
GTAATTGGTGTTATAC	alt_790_reverse	10	20	12	9	23	12	23	8	19	1
GTTACCCAGGGGCTCT	alt_790_reverse	17	30	20	18	34	21	31	20	25	9
GGAATACAGGACTAAA	alt_790_reverse	97	166	143	119	159	120	177	103	201	98
CTACATGGACGGCAGG	alt_790_reverse	12	15	7	4	12	14	18	11	13	7
CCATCGTTTATTCCTG	alt_790_reverse	103	140	117	89	156	102	174	100	167	67
ATCTGCCCGCAAGGGA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGTGTAATTCCCT	alt_790_reverse	17	16	21	16	27	13	19	10	26	9
AATCTTATCGTCACAT	alt_790_reverse	51	43	65	45	52	41	39	32	51	34
GGCGTGCCTACTTCGC	alt_790_reverse	41	49	42	40	52	38	65	36	70	37
TGCTTGTTCGTCAAGA	ref_790_reverse	54	113	81	78	126	51	118	59	121	55
TCTGGAACGGGCGGGT	alt_790_reverse	22	64	34	35	79	23	76	32	86	24
CACCGGCCCTCATGAC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TTACCGCTCCTGGAGC	alt_790_reverse	22	25	30	15	24	13	29	24	32	22
TCAAACAGGCCTTCGT	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
GATGCGTAATGTGGGG	alt_790_reverse	16	19	14	7	9	12	19	7	15	8
ATGGTCGCATTTTCCA	alt_790_reverse	13	29	12	11	18	14	23	6	23	15
TGAGTTACCGTCACTG	alt_790_reverse	35	47	39	23	47	26	49	34	45	23
CGGGCACAACCGAGAT	alt_790_reverse	20	25	19	15	21	13	33	19	29	20
CTCACTAGCACCATAC	alt_790_reverse	12	25	9	12	18	12	16	9	21	13
TGTTCGTTTGTGGATA	alt_790_reverse	6	16	7	5	12	9	19	6	9	6
ATTAAGTTGGCCTTCA	alt_790_reverse	81	111	98	84	125	87	121	79	140	73
AGTATCGCCAGGTTAT	alt_790_reverse	25	41	40	28	48	20	42	21	49	28
ATGCTGCTCAGGAATA	alt_790_reverse	17	38	21	24	30	37	37	20	31	13
CGCTTTTTGTATGAGC	alt_790_reverse	6	8	10	3	12	5	8	6	5	3
GACTGCGCAGCAATGA	alt_790_reverse	54	74	51	35	66	47	63	34	56	47
GTTATTTGGTCCGTCC	alt_790_reverse	13	29	10	9	19	12	22	9	17	5
TCATATCCTGCCTGGT	alt_790_reverse	69	104	87	85	103	78	103	74	110	72
CAGACGACCGCAAGTT	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
GATAGAGCGTAAACCG	alt_790_reverse	37	68	56	49	79	34	59	34	73	31
CTTCCTTGTCTCTATC	alt_790_reverse	11	27	21	24	35	20	18	36	26	18
GAGTGGCCGAATATAT	alt_790_reverse	17	33	18	20	32	17	30	21	30	14
GATTCACGGGCCGAAC	alt_790_reverse	32	44	45	24	34	32	40	22	30	23
GAATGCATCACTACTG	alt_790_reverse	117	158	156	113	191	112	200	116	218	91
AGCAGTAATTGATTTC	alt_790_reverse	15	12	15	15	6	16	14	8	19	10
TACCTAATATCTCTTT	alt_790_reverse	2	4	5	6	5	2	2	3	8	0
TTATTAGTATCAGGTG	alt_790_reverse	25	59	35	37	57	40	54	26	64	27
ACTGGAAAATTGTTAG	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TCTGACGGAGGGTCGG	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
AACCCCCAATTAATTT	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGAAATAGCTTGT	alt_790_reverse	45	65	63	53	82	34	82	47	75	44
TTTCCACGAGCGGCTC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
ACTTAGAAGCTTCGCG	alt_790_reverse	71	114	63	62	93	53	106	64	106	70
CATCGTGAACAGCCTA	alt_790_reverse	23	37	25	29	50	31	44	24	35	23
TTAGGATCGGCTATCA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
CATAACTATCGGCGGC	alt_790_reverse	51	72	60	45	56	48	75	45	74	49
CGACCCCTAGATCAAA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TTCACACCATCCGCCT	alt_790_reverse	29	73	41	50	81	45	86	36	78	41
AAATTCATTTTCTAGA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TTCCACCGACTTCTTA	alt_790_reverse	15	34	16	23	44	23	51	32	52	16
GGTAGACGGTCATGTG	alt_790_reverse	2	9	3	4	10	4	6	5	10	2
AGGGTTGGTTCCTGGT	alt_790_reverse	20	22	20	11	22	13	23	16	31	13
ATTTTCATTTTCAGGC	alt_790_reverse	100	134	124	88	179	116	155	88	154	115
ATTTTAGCTTGGTCTG	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
AGGGATCCCGGTAAGA	alt_790_reverse	259	341	250	235	311	200	305	207	337	208
AGACTCCGATCGCCGC	alt_790_reverse	4	5	0	5	12	2	9	1	16	2
TCGTTGACGTTGCTAA	alt_790_reverse	9	10	8	11	11	11	8	6	17	5
ACGTCGGTCAGGGTCC	alt_790_reverse	9	12	12	2	10	6	5	7	12	3
GGGGCATGTGAATTCT	alt_790_reverse	21	30	26	25	22	19	25	19	23	29
ACTGGCACGTTTTTTA	alt_790_reverse	19	14	28	21	37	22	27	15	33	17
TTGACTGAACCATATC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCAGCGTATTGTG	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCGACTCACGCAA	alt_790_reverse	13	27	21	15	35	16	42	12	30	19
GATCGGCTGGTCTGGA	ref_790_reverse	5	5	7	9	13	6	13	5	6	6
TCCGGAGGGGTTAAGA	alt_790_reverse	11	14	8	18	16	10	21	10	22	4
TACTCAGCGAATCTAT	alt_790_reverse	18	38	21	20	31	11	39	21	25	17
TGAAGTACCCCTGTAA	alt_790_reverse	27	36	24	20	36	25	37	13	37	29
GCTCTCGGTTCCGTGC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGTCAAGGTTTTA	alt_790_reverse	2	6	5	4	7	3	8	13	10	5
CTACACATCACGTTGT	alt_790_reverse	54	73	44	40	82	24	79	34	80	30
CACATTCTACCAGCCT	alt_790_reverse	25	49	21	25	52	17	40	24	47	29
GTCATTGGCATGTACT	alt_790_reverse	37	58	54	46	61	27	67	46	78	47
CACACTTAGCACCATC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCAAGTCCGGAT	alt_790_reverse	51	82	59	37	75	55	92	63	103	32
CATGATTTACTGATCT	alt_790_reverse	37	50	38	27	37	44	63	22	50	31
TTTAGAATGTTTCTAG	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
CTATCCGCTACTACGG	alt_790_reverse	17	38	19	17	46	31	35	20	40	14
TCCGTGCCAGTTAGTA	alt_790_reverse	19	36	17	21	39	20	32	19	38	27
TTGTAAGTGGTACTCC	alt_790_reverse	7	13	7	8	8	2	16	9	15	4
TTGTACCCGTAACTAA	alt_790_reverse	76	97	90	74	127	63	105	71	111	70
GCAGTGTAAGAGCTCT	alt_790_reverse	6	9	4	1	10	2	9	5	11	8
TCGATTAAAAGCTATG	alt_790_reverse	12	6	10	7	11	3	6	8	13	8
GGCATACTGGAATTGG	alt_790_reverse	20	48	28	32	54	24	49	30	38	21
ATCACCAGGTAGTTTG	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
AGACCAGGCTTGTAGC	alt_790_reverse	5	13	6	8	11	12	13	5	19	8
TGCGATACACTTACTA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGCTCCGCCACGA	alt_790_reverse	54	81	61	82	76	56	107	52	99	56
GAAAGGTAATTTCTCC	alt_790_reverse	5	7	5	7	12	11	7	4	7	4
TATTGTCCGGTAGTTT	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGCTTTCAAATCT	alt_790_reverse	49	80	66	55	78	64	95	40	81	52
CCACCTCTCAGCATTT	alt_790_reverse	11	15	11	12	16	20	11	8	22	6
AGGGAACCCGGTAAGA	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
GAGGCCTAGTCATATG	alt_790_reverse	54	71	55	44	55	54	51	33	61	46
CAGTTAAACCGACATG	ref_790_reverse	34	37	31	37	57	37	68	30	53	22
TCGTATAAAGCTAATG	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCAGCCTTTATTC	alt_790_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAGCCCGGGCTCC	ref_5738_new	39	54	56	34	64	35	61	33	50	36
CCAGGTTCTGGCGATC	ref_5738_new	24	29	32	15	36	20	32	16	43	17
TTGAGTGAGACTCCCA	ref_5738_new	162	259	175	126	273	154	271	144	283	154
GCCTCACAGGTATGCT	ref_5738_new	19	41	49	36	57	32	52	32	76	22
GGTTAGGTCTCGCTAT	ref_5738_new	32	91	29	19	76	25	117	16	103	27
CATCTAATGCTTAGGG	ref_5738_new	6	9	15	5	19	14	14	13	8	15
ATGTTTCATGCTAATC	ref_5738_new	19	27	24	27	33	16	37	29	37	22
ATACAAGCCGTTATGG	ref_5738_new	12	15	5	14	13	9	19	9	25	10
CATTCTGGTGTCTAGT	ref_5738_new	0	0	0	0	0	0	0	0	0	0
GTGAAGTAACTCTAAG	ref_5738_new	25	59	33	35	19	22	38	23	41	26
GAATTGTCTAATCTTC	ref_5738_new	27	23	16	24	19	14	23	17	23	17
GGAGTTACAGCGACTT	ref_5738_new	19	33	27	18	22	17	38	14	33	13
AGCCCGTAGTACTATT	ref_5738_new	4	2	2	0	5	2	2	2	3	0
CCGAGGGGAGAAATAC	ref_5738_new	0	0	0	0	0	0	0	0	0	0
GATACATAGCGCGCAC	ref_5738_new	126	195	202	138	225	144	236	134	224	124
TTCTATTCCTACCGAA	ref_5738_new	0	0	0	0	0	0	0	0	0	0
GCCTTAGTGCCGTTCA	ref_5738_new	0	0	0	0	0	0	0	0	0	0
AATATGTGATAGCCGC	ref_5738_new	0	0	0	0	0	0	0	0	0	0
ACGGATTGGATATGCG	ref_5738_new	12	12	8	14	16	6	14	7	22	8
TGTTATATGTTGCGTT	ref_5738_new	0	0	0	0	0	0	0	0	0	0
CCGTTCGCCGAACGAT	ref_5738_new	32	61	44	36	58	30	77	39	71	32
ATTCCGGGAGTAACGT	ref_5738_new	41	95	34	24	118	44	114	31	102	31
TTAACTATTAGTGGTA	ref_5738_new	16	22	17	13	21	10	26	4	21	11
CCATTAAGTATTAGAC	ref_5738_new	16	43	32	23	32	25	23	12	28	20
ATCTAGCCGATCGGTT	ref_5738_new	0	0	0	0	0	0	0	0	0	0
GGCGACGTTTGGTGGG	ref_5738_new	6	4	5	0	1	2	3	1	3	1
CTTAATACGTCTACTA	ref_5738_new	10	22	12	11	13	15	24	9	23	9
CCTCTCCAGCTCTTAA	ref_5738_new	5	11	9	4	13	5	8	10	18	4
TAGTACGTTTTATCGT	ref_5738_new	0	0	0	0	0	0	0	0	0	0
ATCACATATGTATCAT	ref_5738_new	14	13	13	13	13	16	11	9	12	6
CCCGAATAACTGGTAA	ref_5738_new	19	62	37	26	77	18	62	29	66	20
CTACCTAGCGTGTTTC	ref_5738_new	0	0	0	0	0	0	0	0	0	0
CGGTGGGTGAAGCTGC	ref_5738_new	18	29	26	28	49	28	28	30	34	23
GAAATCCCGGAGTCTT	ref_5738_new	17	21	20	19	25	10	26	25	21	14
CGTTCCTTGCACATTA	ref_5738_new	7	18	8	13	22	7	16	7	16	11
CCAGGTAATGTAAATC	ref_5738_new	4	8	5	4	12	1	12	10	14	6
GGTACTCGCCCGATGT	ref_5738_new	18	35	26	31	34	20	41	22	37	21
AATGTAGGTGTACGAG	ref_5738_new	1	9	4	5	8	1	6	2	5	3
CTGCTTTTGCTTACAC	ref_5738_new	0	0	0	0	0	0	0	0	0	0
ACTTCTTCTCAGTTGT	ref_5738_new	0	0	0	0	1	0	0	0	1	1
GTCACCTTCCTATGAG	ref_5738_new	25	58	46	29	74	29	54	28	67	26
TGAAGTATCTGCTGGA	ref_5738_new	0	0	0	0	0	0	0	0	0	0
TGCATGTCGCGGATTG	ref_5738_new	0	0	0	0	0	0	0	0	0	0
ACTCAGAGTTACGGGC	ref_5738_new	68	87	74	60	123	70	94	48	87	72
GGTGGTTCCCCCGTGG	ref_5738_new	6	7	5	5	10	9	11	5	16	6
GTGTCTTTATGAGTCT	ref_5738_new	64	65	85	81	65	70	83	63	77	61
CCTGCAGTGAGCTAAT	ref_5738_new	20	21	22	5	20	10	28	14	28	13
TAATGTTCTTTGAGAA	ref_5738_new	47	80	50	48	90	37	85	37	91	52
TAGATAACGCCGTTTG	ref_5738_new	36	34	28	21	40	19	37	26	29	28
TTTATTATACCGTGTC	ref_5738_new	6	5	4	4	3	2	8	2	4	7
TTTTCAAAGACCTACA	ref_5738_new	40	70	46	44	62	33	58	37	70	46
TCTAACCCCGGGGGGC	ref_5738_new	9	12	6	8	21	17	21	9	21	12
CGCAAAAACACCAAAA	ref_5738_new	18	21	13	18	22	16	16	13	15	10
AGTAGCGTACTCTGTA	ref_5738_new	15	18	14	12	33	15	29	14	21	12
GAGTGGATACTCACCT	ref_5738_new	10	144	19	12	152	16	161	23	157	16
AGTCTTATTTAGCTCA	ref_5738_new	22	24	26	21	30	18	21	22	24	18
AGACGTCAGGTTCCTG	ref_5738_new	24	37	47	23	33	24	35	21	38	21
ACTAACGGCCTTTCGG	ref_5738_new	9	31	15	7	21	8	23	9	17	17
AAGCTGACAGCATCAC	ref_5738_new	8	7	9	6	13	4	8	7	12	5
GCGCCGGTTTAACCTA	ref_5738_new	0	0	0	0	0	0	0	0	0	0
GACCTCTCGTTTTCAG	ref_5738_new	0	0	0	0	0	0	0	0	0	0
GATTCATACTGGCTTC	ref_5738_new	58	87	60	79	90	59	88	48	100	69
GCTCTCGTTACTATGG	ref_5738_new	0	0	0	0	0	0	0	0	0	0
GCGTCTCTAAGTAACA	ref_5738_new	15	52	36	32	55	38	58	25	71	28
TTCCGGTTTATTGGTT	ref_5954_new	8	10	9	9	16	10	11	5	19	2
GAGTAGGAAGTCGCAA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CATTCGAGTTGAAGTA	ref_5954_new	33	83	31	36	65	33	74	30	68	21
CTTTTGTGCTGGGCAC	ref_5954_new	3	4	1	2	5	1	2	1	4	0
TTCCCACTGCACTCGT	ref_5954_new	33	59	38	38	63	39	61	28	79	32
TGGACACTCAGTTTGC	ref_5954_new	4	74	18	11	92	13	60	12	78	5
CTGTATCAGGAATTAT	ref_5954_new	17	30	13	12	29	11	20	12	33	10
CGCTCTGTTTGTTCCC	ref_5954_new	9	31	13	17	36	19	27	13	34	4
GGCATCGCAGCCCTTA	ref_5954_new	1	4	3	5	8	8	0	2	3	2
ACTACCGTTGCATGGC	ref_5954_new	0	0	0	0	0	0	0	0	0	0
ATTTCTGTTTTTTATG	ref_5954_new	12	8	0	2	6	7	18	7	14	9
TTTATTGATCTCTAGT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GAGTGATATTGAAGTC	ref_5954_new	10	17	13	7	12	9	27	10	15	3
GTCGGGGCAAAATTTC	ref_5954_new	8	18	8	6	15	7	9	7	7	6
CAGGGGCTTTAGTGGC	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CGCAATAATTTCCGAA	ref_5954_new	2	6	5	3	13	9	13	2	6	4
TGCGTCCTCTTACACT	ref_5954_new	14	23	10	12	28	16	24	8	28	7
ATACCCTGCTCGCTTG	ref_5954_new	11	44	29	19	36	13	57	20	49	20
ACTCACTATATTCGCC	ref_5954_new	1	4	0	0	10	0	10	0	5	0
CGTTCGGTCCATTCAG	ref_5954_new	19	23	20	16	25	6	25	12	32	14
TATAAGATTGCCGTTG	ref_5954_new	31	50	35	30	45	35	53	33	52	23
TATTTCCTCGTTTCTT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
AATTGTCCGCGCAGCG	ref_5954_new	30	59	46	21	82	23	51	30	66	17
GAGTGTCGATCGTTGG	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GCTCACATACTAACGC	ref_5954_new	20	28	21	25	38	22	30	22	49	11
AACATTAGACGCAATG	ref_5954_new	10	27	15	3	17	8	27	9	27	12
GGGCTCATGCTAATTA	ref_5954_new	35	94	53	45	83	36	74	30	118	33
TCCCGTATGATTTGCG	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GTGTTTGGATAGGCCA	ref_5954_new	12	21	8	5	9	8	13	5	12	5
ACCTGCCTGTCGTTAA	ref_5954_new	20	63	22	27	64	17	65	16	68	12
CCGTTGATAACCCGGT	ref_5954_new	11	33	13	21	31	7	27	8	23	8
TCGCCTACTTACGCAT	ref_5954_new	3	12	1	1	8	4	11	4	20	5
AGACCATAGGGCTCTG	ref_5954_new	38	110	60	59	111	48	106	56	124	34
GTCAAACGTGTTTTCT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
TGGTTAACAATCAGCA	ref_5954_new	35	73	60	48	79	37	102	37	92	38
GAAGCGCTAGATCGTA	ref_5954_new	12	33	9	10	12	7	15	6	38	7
ATTTAGTACCGTGCGA	ref_5954_new	5	14	5	5	17	3	16	1	20	0
CTTACCGCATCCTGTT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
ACATCGGTCTTCGACG	ref_5954_new	21	121	25	16	109	27	130	27	117	14
TGTCTGGACAACTGGC	ref_5954_new	0	8	2	2	14	2	10	1	9	0
ATATCACTCTTCCGTG	ref_5954_new	17	28	12	12	29	5	32	20	38	14
AGAGTCGCATGTTCAA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
ACTATATCCAATCTTC	ref_5954_new	22	17	16	18	22	5	24	9	20	18
AGTCTGATTCCGTATC	ref_5954_new	81	184	115	80	166	106	166	104	217	78
CCTGGTGGGCGAGTTG	ref_5954_new	6	22	4	11	25	8	19	6	28	6
GAATGTTACGGTACGC	ref_5954_new	23	53	25	24	58	24	48	24	84	26
CCCCTCATGATAGATT	ref_5954_new	12	28	17	15	35	14	45	17	49	21
GCCGTGCCCGCCCGGT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
TGTTCGGACTCGGTCC	ref_5954_new	5	19	3	12	20	6	26	10	17	7
TTATTGGTGATCCCAT	ref_5954_new	23	24	13	17	22	20	39	17	33	19
TGTTTAGAGGGCCCCA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GATTATAGCCGCAGTC	ref_5954_new	2	11	1	2	3	2	4	2	8	1
CGCTCTTCTGGGTGGG	ref_5954_new	1	2	3	2	3	3	2	1	2	1
GTGCCACTCGAACGAG	ref_5954_new	9	13	4	9	11	7	12	9	16	3
ATCCCTGCTTCGCGCG	ref_5954_new	13	22	14	8	21	4	33	8	30	11
TGTCTCTGCAAACGCC	ref_5954_new	7	14	7	6	14	9	19	6	20	3
TTGTCTCGAATAAAGT	ref_5954_new	8	22	11	9	24	12	19	9	29	4
GGTGGACTGAGGGTCT	ref_5954_new	48	91	51	42	80	39	83	39	91	47
TTTACCCTCGTTAAAA	ref_5954_new	8	22	10	8	20	12	15	7	22	8
TACGGTCTACCGCATC	ref_5954_new	0	0	0	0	0	0	0	0	0	0
TGCTTTTTTATTCTAG	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CCAACTATTAGACTTG	ref_5954_new	1	6	1	2	15	2	10	1	13	0
ACGGTGGTTAGTCTCT	ref_5954_new	3	14	8	8	19	9	7	8	25	8
TACGTGGCCGCCCATC	ref_5954_new	0	0	0	0	0	0	0	0	0	0
TTCCTGATGTCTGTGG	ref_5954_new	72	180	89	60	186	63	192	75	200	65
AATAGGCATTTGGCTT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
AGCGTTCGGGTTAGGG	alt_5954_new	64	95	68	57	120	61	117	68	147	59
TATTCCCGATTGCGAA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GATTTACCCTATCCGG	ref_5954_new	8	23	14	13	24	18	30	8	29	11
GTTAACATCTGGTAAC	ref_5954_new	100	237	123	78	234	71	212	70	219	104
TGTGTTTTACCTTACG	ref_5954_new	45	96	44	37	107	36	147	38	146	25
CCTTTTTACTTGTTCA	ref_5954_new	5	12	9	2	13	6	11	5	17	3
ACGGCTTAGCTGGAGC	ref_5954_new	15	27	24	14	35	21	36	14	37	21
TCACTCCGTTCTTTGG	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CAGGTTTCTCCTTCCA	ref_5954_new	11	14	8	6	24	13	26	12	14	6
GCGTCTGGTAGTTGCT	ref_5954_new	1	3	5	4	2	2	2	2	8	3
CGGTTACCCTCCTTCC	ref_5954_new	19	26	21	19	39	17	35	14	37	18
CATCAGTTTATGTCCT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GTGATAATCCATCACA	ref_5954_new	29	65	38	26	61	26	45	28	63	33
GCCGTGACCGCCCGGT	ref_5954_new	97	191	113	88	195	87	222	90	186	90
GACGTTTTGTTGGACC	ref_5954_new	38	83	51	49	109	47	82	27	91	33
GTCTTTCTCTAAGCAT	ref_5954_new	82	163	113	84	170	82	200	80	179	91
TTAGTAATTTAGTGCT	ref_5954_new	162	314	234	172	365	172	322	139	417	176
GGTTAGCAGCCACCTA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CGCTTGCGCATCTACT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GATTGGACCTAGTTTT	ref_5954_new	33	54	22	26	57	25	64	17	61	27
GCAGACATGTTCTTAT	ref_5954_new	50	164	67	59	158	57	168	64	170	37
CACCAGAATCTGAGTA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
ATTTGACTCGCCTGTA	ref_5954_new	6	30	12	8	17	8	28	5	13	9
ACTGTTGCGACAAAGG	ref_5954_new	40	63	47	32	83	38	70	25	74	30
TCGATCCGAAAAAATA	ref_5954_new	0	2	0	1	2	1	6	2	4	3
GTTTCCTTTGGGAGTG	ref_5954_new	43	112	44	35	95	37	105	40	123	33
CCACAGGGCACGCCGG	ref_5954_new	5	5	3	4	9	5	11	5	3	8
TGTCTGTAGCTTTCTT	ref_5954_new	0	11	8	2	9	2	12	6	13	0
AGTATACCATTATGCG	ref_5954_new	48	116	66	45	123	48	112	56	129	45
TTAGTAATTTAGTGAT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CCCTACAGTCATATGA	ref_5954_new	17	30	16	13	35	16	44	12	36	11
AATAAATGAACGTATC	ref_5954_new	12	22	12	7	20	8	19	8	20	6
CGGGCTGACACGAACT	ref_5954_new	4	6	3	4	5	2	5	8	11	1
GCGTAAAGGGTGTTCA	ref_5954_new	12	36	12	10	20	6	23	10	42	14
GTAGTAGTGTTTGGCT	ref_5954_new	40	83	49	33	103	35	76	34	83	31
ATACTACCACTTTAGG	ref_5954_new	7	15	11	9	13	15	19	9	20	1
CATTGGAGGGAACCCT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GCGTTAATTGCTGTTT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CGCCTTTCTCAGTGGT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CTTAGGCCCGGAGTCG	ref_5954_new	11	9	7	4	9	5	20	6	9	4
GTTTGTAATGCAGCAT	ref_5954_new	14	34	17	13	44	27	63	16	39	16
GGGAGAAGAACGAGAT	ref_5954_new	10	24	7	11	16	7	24	7	25	6
GTTTCCCTGGTTGTCG	ref_5954_new	9	30	17	12	31	9	29	8	32	14
TTGTGTTAGCAACCAA	ref_5954_new	8	15	4	2	11	7	10	8	10	5
GGGCGGCTTCTGCCAG	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CCGGACTGCTCGTTTT	ref_5954_new	3	36	1	8	43	5	58	1	59	3
CGCGGCTTTCTGTTTA	ref_5954_new	10	41	4	8	44	10	25	9	45	7
CACGGTTACTACTATT	ref_5954_new	25	44	19	22	44	19	39	23	46	18
GTCAGTTCATGACGTG	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GTTATGTGCACAATTA	ref_5954_new	1	6	2	1	6	4	6	0	13	1
TCGGGAATCCGTTGGG	ref_5954_new	10	15	13	8	17	4	25	14	29	8
TATGGTGACTAAGAGT	ref_5954_new	20	38	21	16	33	20	39	21	49	14
TATTTTCGTGCAACCG	ref_5954_new	32	73	55	30	89	32	95	37	97	24
TTCATCTGTCCATCGT	ref_5954_new	5	18	8	10	16	9	15	6	9	8
GGCACGCTGTATGTCA	ref_5954_new	2	6	4	6	21	3	6	4	2	4
CTGGCCATTTGACTGG	ref_5954_new	8	5	8	1	3	5	8	4	5	3
ATAAATGGTGTGCTCA	ref_5954_new	76	161	90	61	175	86	191	88	184	64
GAATGTCCTTAGGCAC	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CTATCGTGGACTCCGA	ref_5954_new	33	43	23	27	45	22	51	17	44	16
TGTTGCAAATGATCAG	ref_5954_new	21	49	39	18	46	32	64	22	50	20
ACGTGACGGTTTTATA	ref_5954_new	40	74	44	39	80	50	80	34	77	40
ATCTCCGCATTTGTGC	ref_5954_new	19	53	25	20	69	21	81	18	77	23
ACTAACGACCATTCTC	ref_5954_new	14	33	17	13	40	9	33	12	35	11
TATGTTAAACTAGGGG	ref_5954_new	3	9	0	3	6	3	9	2	5	2
TGACGGGTGGCGCGCA	ref_5954_new	0	1	0	0	0	0	0	0	2	1
TTTACATTTTGGGGTA	ref_5954_new	9	28	9	14	25	12	23	16	36	10
CACTGTGGTTTTCTCT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GAGGTCAATGTTGAGC	ref_5954_new	18	44	25	24	35	27	45	12	41	14
GTCACGGCCAGGCACC	ref_5954_new	146	222	167	120	225	143	240	122	268	99
CATCAGATGCATGCCT	ref_5954_new	31	40	23	17	51	27	44	25	65	17
TTATACAGCGATCCAA	ref_5954_new	7	10	7	7	12	10	10	5	7	5
ACATGTTGCTTTCGAG	ref_5954_new	2	4	4	3	3	2	6	2	2	0
CCGAGCTATGGAGCAA	ref_5954_new	8	24	13	11	15	11	24	10	32	12
TCACTCTTTGTGCTGA	ref_5954_new	3	11	5	5	14	7	15	2	13	3
TATTTTCATCGCATTT	ref_5954_new	22	54	17	20	38	27	46	10	37	21
TCCTTTTCAGCTTCGT	ref_5954_new	10	5	6	3	11	7	11	6	3	4
TGTATTTGTCAGTACA	alt_5954_new	19	28	23	9	35	27	42	12	31	9
TGGCCACATATTCCAT	ref_5954_new	0	0	0	0	0	0	0	0	0	0
TCTAATAGGCATGCTT	ref_5954_new	7	30	16	12	24	8	33	9	36	14
TGTGGTTCTTTATATA	ref_5954_new	21	40	19	17	41	13	43	11	41	17
TTGGCAAGTTTGATGC	ref_5954_new	12	30	15	10	21	8	12	12	33	12
GTAATATGCTATATCG	ref_5954_new	40	117	36	30	106	30	95	25	102	44
ATTTGACATAAACCTC	ref_5954_new	50	136	72	47	152	51	164	51	130	49
GGCGCCTACTAGGTCT	ref_5954_new	2	5	6	2	9	1	4	2	7	3
GTTGCTACACGATACC	ref_5954_new	1	4	4	4	5	1	7	4	5	3
CTTCTTGGCCAATTAG	ref_5954_new	8	6	4	3	8	5	14	1	10	1
CGGCATTGTTCCCGGA	ref_5954_new	7	7	12	9	11	6	11	3	9	5
ACCATTGGGCAACCGT	ref_5954_new	5	7	8	3	6	1	9	7	9	4
ACACCGGGGGTCACTA	ref_5954_new	12	33	13	11	30	16	38	11	31	7
TGGACATTCTTTATAA	ref_5954_new	2	19	15	6	30	8	27	5	14	3
ATCAACCGACTCCTGA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
GGTCTCGTGCATCCAG	ref_5954_new	0	0	0	0	0	0	0	0	0	0
AACTGTTAGGTTTGTA	ref_5954_new	0	0	0	0	0	0	0	0	0	0
CAACTCACGAAGCTCT	alt_3406_RC	5	5	7	3	6	3	5	3	8	2
ATGCTCTTAAACGTAA	alt_3406_RC	13	29	20	21	40	14	32	16	31	9
TGAACCTACCCACGGA	alt_3406_RC	18	23	11	20	24	18	32	10	38	10
CATTCCGATTATGTCG	alt_3406_RC	29	34	37	34	55	27	53	32	44	19
AGGATGAGGTTATGGC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
CGGCGGTTCAAAGCTG	alt_3406_RC	12	25	23	7	29	10	24	10	28	11
CTATCGCAGATAGGGC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
CCTCTCCTTTAATCCT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
CTCCCGTTCCCCACTA	alt_3406_RC	26	83	40	33	86	30	80	21	113	21
GATACGTGCTCACACG	alt_3406_RC	75	120	91	64	133	78	128	84	141	66
CATTTATAAACCTATA	alt_3406_RC	14	34	27	25	38	31	54	18	50	27
GGGACTACCGAGTTCT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GACACGGGTCTCAAAC	alt_3406_RC	4	9	5	3	5	6	9	5	6	3
CGTGATCGTGTGCACA	alt_3406_RC	20	63	35	25	45	30	70	39	72	26
TTTTGGTCTATTTGGA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GTTTATGATCGCACTG	alt_3406_RC	42	67	53	64	57	53	67	31	74	31
ATGTTCTGACAGATTA	alt_3406_RC	7	26	15	6	25	7	11	9	12	12
CTCAGCCTTTGTAGCA	alt_3406_RC	11	32	12	9	51	20	32	15	41	19
GTATGGCTCCCACTTT	alt_3406_RC	4	11	14	5	23	9	15	8	20	6
AACTAGCAGTTGCGGT	alt_3406_RC	23	43	18	32	45	17	51	28	41	27
TGGTTGGGAGGCGGCT	alt_3406_RC	25	40	51	28	49	46	79	41	73	26
CATTCAATACTTTGTA	ref_3406_RC	2	12	9	9	11	8	11	4	10	5
CGCGGTTCCTTTGGGT	alt_3406_RC	2	14	5	7	13	3	15	4	9	6
AGGCCTTCAGTTGGCT	alt_3406_RC	22	44	33	27	56	28	54	32	46	27
AGTTTTTAAATAGGTT	alt_3406_RC	4	4	6	3	6	7	4	2	9	1
GTTTGAGACTAGGCTA	alt_3406_RC	8	7	20	8	6	7	13	7	7	8
TGTGTTCTTTGCATGG	alt_3406_RC	24	53	27	30	54	31	57	21	64	33
GCATGGGACGGCGGTG	alt_3406_RC	36	42	35	38	49	38	54	40	59	34
CTGTTTACGACCCAGT	alt_3406_RC	15	20	21	10	14	6	17	14	16	14
ACTGAATATGAGTCTT	alt_3406_RC	16	35	31	14	37	14	43	14	42	18
TGGGAGTTCCACGGGC	alt_3406_RC	20	36	29	18	24	16	37	15	31	18
TCTTGCGTGCTCTACC	alt_3406_RC	6	6	5	7	14	9	23	4	23	8
CCCCTTTACTGACATA	alt_3406_RC	5	17	6	12	15	15	17	11	25	6
TTTAGTCGTACCTCTC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
AAACCCTAGGCGTTGA	alt_3406_RC	7	10	9	7	9	3	12	7	10	5
GTCATTCTTCTAGTCA	alt_3406_RC	2	8	5	7	5	8	9	8	9	4
TTCAGAGAGTGACAAG	alt_3406_RC	7	11	15	8	14	8	15	8	18	12
CCTATGAAGGGTTATT	alt_3406_RC	11	20	9	14	24	8	20	11	27	7
ACCGAAATATTCAAGG	alt_3406_RC	35	71	42	30	69	34	64	30	92	35
GTCTGGCGGTATCTTG	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
ATACCGAATCCTCTCG	alt_3406_RC	6	8	7	6	9	1	11	2	8	3
TCTGTCCCGAATCGCC	alt_3406_RC	17	29	23	14	30	15	19	17	37	16
GAGTGCATTTCTTGGC	alt_3406_RC	3	1	4	4	5	1	9	2	3	5
ACGACGTTATATGTTT	alt_3406_RC	65	151	98	84	139	82	145	86	133	73
GGCCTTCTAGAAGTCT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCCATGCACTTC	alt_3406_RC	35	63	34	24	53	38	60	37	62	47
CCTGTGAAAATATCGT	alt_3406_RC	2	13	3	1	3	0	8	2	7	2
ACGTACAATTCTCCCT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GAGTCCGTCATTATAG	alt_3406_RC	15	26	25	18	30	6	33	5	37	13
TGCGTATCCAGCCATA	alt_3406_RC	7	7	7	9	9	9	6	11	13	6
TATAGTCCTAGCTCCC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GGTAATTTATTGTGAG	alt_3406_RC	5	11	6	3	7	1	8	2	11	2
TGGCTAAGTCCGCATA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
AATTGGATTCTAACTG	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GGTGCTAAAAGCTTAT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
TCCGTATCAATGAACA	alt_3406_RC	6	19	5	5	11	1	10	7	17	7
CCTCAAAGGATGCCCA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GCTGTTACATGATTTT	alt_3406_RC	121	195	150	132	201	130	215	106	237	113
ATTCGTGGATAACCAA	alt_3406_RC	16	37	16	11	25	12	32	16	29	7
TTCCTATGCCATGTAG	alt_3406_RC	1	4	5	2	5	4	12	2	2	5
AGATAGGCCGGAAGCG	alt_3406_RC	8	15	10	11	9	11	8	8	12	5
TTAAGAGTTTAGGACT	alt_3406_RC	0	5	0	2	1	1	5	3	1	5
AAGGCTCGTCATCTTG	alt_3406_RC	28	26	36	18	41	21	44	16	60	15
CGGGGCCTCTTGTTAC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
ATTCGTAAGTCTCCCA	alt_3406_RC	21	32	22	21	26	20	35	14	31	17
GAGAATTGTTTTCCGT	alt_3406_RC	62	86	58	46	88	50	83	56	104	36
CAATCGAATGGATGCC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
CCCCGTCATAAGGTTG	alt_3406_RC	1	12	2	0	10	0	11	0	16	1
CCTGCTCGGAGGGTCC	alt_3406_RC	30	97	33	34	64	30	78	24	74	27
GTTAAACTTACTTACA	alt_3406_RC	3	6	10	1	4	5	13	4	8	6
GAATTGCTCGTTTAGT	alt_3406_RC	73	135	75	75	115	59	161	54	149	55
CATTTCGAGTTCTTTT	alt_3406_RC	35	59	48	26	57	44	62	44	49	44
GCGGATTACGGTTTAC	alt_3406_RC	8	22	20	9	25	11	18	6	36	13
TACTCTTTTCGTGCTC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
AAAAAGCCATTTCCCC	alt_3406_RC	13	36	40	26	42	20	57	22	35	31
CACGCCAGAACCCGTT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
CATGATACTTCTGTTA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
CTTTCTCCGATAAGTG	alt_3406_RC	2	19	4	9	7	10	15	4	16	5
CGTGATATAAAGTCTA	alt_3406_RC	51	96	51	44	103	57	103	32	132	52
GACTTCCAGATAGAAG	alt_3406_RC	4	12	5	6	19	10	26	2	20	7
AGATAGAACGCTTTTA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GATAATCGACGTTTTG	alt_3406_RC	16	16	15	18	21	11	22	16	36	12
TCATTTTCTGTGTTGG	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
ATCCGCCGCGATACGG	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
TGCCGGACCTTGTATC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
TCGAGTGGCGAGCTTA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
TAGTACATGGGGGACA	alt_3406_RC	64	75	63	59	83	57	97	51	94	65
CTAGTTCAATCTATCG	alt_3406_RC	15	41	29	18	49	21	40	13	40	7
TGGAACCAAGCGCTCA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
ACGATCAGTCCAAGAC	alt_3406_RC	12	13	9	2	22	5	15	8	11	6
CATGATGCATACTTCG	alt_3406_RC	7	6	7	4	8	10	10	5	10	9
GTAGAATAACAGATAT	alt_3406_RC	53	80	63	62	97	51	92	37	101	61
AGATTTCTAAGACCAA	alt_3406_RC	13	17	12	21	20	13	18	12	23	13
GCTAGGTGGACTTCTC	alt_3406_RC	37	72	60	39	75	40	72	48	85	32
TGTTTGCATTAAGGCA	alt_3406_RC	1	10	9	6	5	3	10	1	4	1
CGGGTTTACAATTCTA	alt_3406_RC	17	27	20	17	24	20	20	13	23	15
GTTAATCCACGTCTCC	alt_3406_RC	3	11	2	4	7	4	6	8	14	3
CCGGTAGGTCGCGGAA	alt_3406_RC	32	57	34	28	64	28	74	38	66	33
CGCCCGTCGTACGTCT	alt_3406_RC	7	44	18	13	45	14	53	14	64	8
GCTAGTTTCGTAGCGG	alt_3406_RC	9	11	13	9	22	16	18	18	19	11
TGAGTCCTCTGGGTTA	alt_3406_RC	17	39	23	23	22	30	27	20	38	16
TTCCGCTGATAGTTGT	alt_3406_RC	6	9	11	5	7	4	10	7	10	6
CGATTGGTTACACGGA	alt_3406_RC	6	13	11	6	11	3	9	4	12	8
GTCCTGCCTATCATTG	alt_3406_RC	7	9	5	1	10	4	8	1	12	0
TCTCAGGACTTCGGCA	alt_3406_RC	14	26	26	24	33	26	36	19	30	19
CGTTCCACCAACTCGA	ref_3406_RC	35	56	39	34	35	28	60	37	61	27
TGCATGTTGTGTAATT	alt_3406_RC	37	49	30	27	41	27	51	30	62	24
TGTCCGGGGGGAAGTC	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
ACGTCTTCCTAATCAG	alt_3406_RC	28	56	36	32	36	39	42	26	56	26
ACTTTCCCGCAATTTA	alt_3406_RC	36	47	33	33	73	35	67	28	73	18
CATCAGATAATCTTTG	alt_3406_RC	3	8	2	0	5	1	11	1	5	1
TAGCCCCTTCATCTAC	alt_3406_RC	29	73	47	37	76	31	74	34	48	29
TACATTAGGGTACTGT	alt_3406_RC	35	74	41	40	72	38	74	40	98	28
TAACAACTTTCACACG	alt_3406_RC	41	39	29	18	54	31	45	17	51	29
GCAGTCCGCGGTCGGA	alt_3406_RC	14	27	18	7	20	13	26	10	19	25
GTTCCAGTTCATTATG	alt_3406_RC	22	44	18	20	24	15	46	18	44	14
TCTGGATTTGTCTTGT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
TCGCTATGCATCGTTT	alt_3406_RC	36	77	61	47	108	36	97	53	84	47
ACTTGCGTCCGCCCAA	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
TAGTAGCGGTCCATCC	alt_3406_RC	8	16	18	12	15	7	24	17	25	7
GGACTTGAGTTGGCGT	alt_3406_RC	0	0	0	0	0	0	0	0	0	0
GGAACTATCCGGAGTA	alt_3406_RC	0	0	0	1	1	2	1	0	0	3
GTTACAGGGATACCGT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCCGAACCGTTTCGCC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CATAATTACCCTGCTT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TATTCACTGTTACGGA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGGAACCATTTGC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGGATCGAAAGCG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCCCGGTCCTCAA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTACCTTTTGACTGGG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTCATTTGGTATGACA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTCCATAGTCTCG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCATCACGCTGTA	ref_2618_reverse	12	12	12	10	6	6	14	11	19	12
AATAACGGGGTTTTTG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
AGAATGCTAACAAAAT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTCCTTTGAAGAT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGTACCTCTCGAT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGGATGCTGCCGT	ref_2618_reverse	13	10	10	8	6	6	3	1	11	4
GTTTATGATCAAGCTG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGTCCCGGTTTTG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGCCATGTCGGACAGT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCTACAGCGCGTTGAC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCCTACTAATCGAATC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ACATATTTTACCGCGG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGTTTACAGGACG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGATGCTCCGCCAACA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGACAAATGATAT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGTTGGAGGCTTC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGCAAATGTTTGTCCC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ACCCGCGCATTTGACT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGTACTGCGGGTA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGCTTTCTAGTTA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTAGGTTGGGACT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTATTATTGTTGG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
AATCTAGCGTCGTATA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGCCCGTTGCCCT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCTACTAGGACTC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTAAAGCTCATCCGTG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCAGAAGCTAGTC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGATTAATGCTTTCAG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCCAATTAATGTAGCT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGATTCACGCTAGGTC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATGCAAGGCGGAATGT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCTTACTGCTGTA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTTTCACATCGTT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGAAGGCTATTCCAGT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GAGCAATTGCGCGACT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGAACTGCGTGTC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TAGGACTTGAGACAGC	ref_2618_reverse	6	15	9	8	10	4	14	7	25	3
GCGGATATGATGTCGG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTACCGCCTCTTC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCCACTTGTTTGC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGGTCATTCTTGC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCCCTTTTCTTCT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGATGCTCCCGAGGAA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTACCCGAATCC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GACGGAACTGCATCCC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCACCAATCTGCTCTA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCAATGTGTCTTG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGGTATGCTTACC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTATCACCAAGTA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGGGTGGGATTCG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTATGGCCGCTCG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTCCATGAGTGGG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTGTTTCGTGTGA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGATGTTCGAATGTCA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GATAATGCATCTTGGC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGGGTAGTCGGAT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCGGGTTCTCTG	ref_2618_reverse	3	14	4	9	3	2	14	7	9	4
TGTTACTATGTGCATA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGGTATATAAAAC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CACTTTAGAATGGTTT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCCATAGTGCAGGCCA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGCTGGGTGGTTT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGGCTATTGAAGC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTAATGATTTTTA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTAAAACCAACA	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCATGAGTTCGCG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGTTAAAATTGGT	ref_2618_reverse	6	20	15	5	14	18	10	9	28	5
AGACAGGGCTTACTTG	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGTAATTCCTCTCGTT	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCTACAGAGCGTTGAC	ref_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTCTTGCTCGTTA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
CGATGCGCGTTACCGC	alt_3161_RC	17	22	21	21	23	32	24	16	23	21
AATAGTTTTTGAAGTT	alt_3161_RC	37	56	37	48	49	27	53	39	67	34
GGTCCAGTGGGCTCAG	alt_3161_RC	1	0	2	0	3	1	1	3	3	0
CTATTACATTCTTTAC	alt_3161_RC	24	57	62	40	57	38	54	37	48	31
GTTCTATGACTCATTC	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
GTGCATCCAGGGCAGG	alt_3161_RC	3	9	4	5	11	4	11	4	7	6
GTACTCATGTGCGTCG	alt_3161_RC	10	14	21	11	18	8	15	6	26	6
TATGCGGTTCCCGCTA	alt_3161_RC	14	13	7	10	16	12	12	11	20	10
TATAAGGTACAATAAA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
GGAATACTCGCTAAAA	alt_3161_RC	64	73	61	58	75	53	90	61	83	52
CTAAACGCTTTCTGTC	alt_3161_RC	13	12	9	15	23	14	17	20	18	11
TGGGTGCTCAAGATCA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCTAAAGGAGGC	alt_3161_RC	23	38	24	25	20	23	43	17	33	19
AAACTGGTCTAGGCTT	alt_3161_RC	0	6	5	1	4	2	9	9	5	4
ACGATTTCTACTCAGT	alt_3161_RC	38	56	41	20	42	15	40	24	60	34
CCTTTAGAACAGGATC	alt_3161_RC	39	79	68	67	98	46	108	51	111	56
GCAATGTTTTTTTCGG	alt_3161_RC	33	72	67	41	66	45	72	34	79	34
GTATCTTCCCATCCTT	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
GTAGTGATTGCCTACC	alt_3161_RC	2	7	4	1	7	2	11	4	6	2
AGTGATAAGTTGGTTT	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TAGGAGGGTGAGTCAG	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
CCGCTGTCGAAAGTAT	alt_3161_RC	9	3	10	3	11	6	12	8	12	9
CATTATCTCAGATATC	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TGGATACCTCATGTGT	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
GGCACCTGATACGTGC	alt_3161_RC	35	136	28	37	182	19	152	26	147	17
GGCCGACTACTATCAG	alt_3161_RC	9	10	12	10	18	8	6	5	10	6
GGTAGCTAACCGGACG	alt_3161_RC	1	3	3	3	4	3	3	2	0	1
CAGAGAGATATACATG	alt_3161_RC	10	22	7	6	26	11	20	11	23	7
GTTTTTTCCGGAAACA	alt_3161_RC	31	52	43	37	50	34	53	38	40	29
TGTTTAGTTGGCGCAA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TGAAGTATGTCATGGT	alt_3161_RC	7	8	1	2	5	5	5	4	7	2
CAGTGGAAACCCTCTA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
GGCAGACTATTCTTCT	alt_3161_RC	26	27	16	26	21	9	23	16	17	19
TGGTCCCGGCGAAAAG	alt_3161_RC	42	51	48	36	53	49	61	45	62	48
TGTCACTTGGTTTCAC	alt_3161_RC	35	36	31	35	33	33	40	42	40	33
CTTGTGTTCATGACCA	alt_3161_RC	23	27	25	20	25	22	37	29	37	30
GTTATGAAAGTTCCAA	alt_3161_RC	18	18	8	15	16	12	20	17	20	13
TTTAAAGATTTTCGTT	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TACAGGCTGGATGCTA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
ACCATCTCGAACCTAT	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
CTTTGAGTTCTCCGCA	alt_3161_RC	6	12	11	8	20	11	18	11	10	14
CTTCAACTTAGAATCT	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TTCCGCTCTAGTAGGA	alt_3161_RC	40	69	66	38	61	50	57	39	51	44
TACCTGGCGTACAACC	alt_3161_RC	15	20	15	11	23	18	19	13	20	6
TTACAGTTCCTTTTGA	alt_3161_RC	119	119	129	92	134	120	107	93	122	88
CTGGGGTGTAGCAAGG	alt_3161_RC	33	30	35	35	37	28	49	18	48	32
TCAAATATTATATCTA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
CAATACGTGGTCTGAG	alt_3161_RC	2	1	0	0	2	1	2	0	1	2
CTATGTCCCCCCTAGT	alt_3161_RC	33	79	60	53	99	45	93	42	89	41
TCCAGCAGTCCGCAGT	alt_3161_RC	93	155	137	105	154	116	177	121	166	113
TTTTTTTGACTTTATA	alt_3161_RC	5	6	3	2	11	4	10	6	6	2
TAGACGTAATTTATGT	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TTCTACGTCATGAGCT	alt_3161_RC	14	20	17	17	18	10	28	17	17	15
TATCTCTTTGGGCGTT	alt_3161_RC	24	29	27	17	29	12	26	23	46	35
TCGTTTCTCGGAAACG	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
AGCCGCAACCATAATA	alt_3161_RC	14	37	24	25	23	8	26	9	41	16
GCTTTCCGTTCTTCGC	alt_3161_RC	27	34	34	39	26	37	31	23	40	35
AAGTTGATTGACCGGA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TCGCAGCTGTGGGTAA	alt_3161_RC	2	9	3	6	2	1	1	4	4	2
GACGGGGGTCCGTTCT	alt_3161_RC	14	17	12	14	13	11	13	8	14	9
CACAATCTCCGGAGCA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTTTACGGTTTC	alt_3161_RC	59	89	52	64	87	64	106	57	99	37
CGTCGCGGGTTCCGGT	alt_3161_RC	20	27	25	15	28	15	28	22	38	14
ACCTAACCATGACGAA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
TTTAGGATCTCAAATA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGCTAGAACATG	alt_3161_RC	14	25	14	12	18	15	31	7	20	11
GTTGCGGGGTGCCTCT	alt_3161_RC	15	25	16	21	27	19	15	17	23	15
TGACGAGTCGTTATTG	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
ACAATGCGCGACATCA	alt_3161_RC	59	81	60	43	67	50	66	41	86	27
CTATCTTGACATATTA	alt_3161_RC	0	0	0	0	0	0	0	0	0	0
GGGGACCCTCGGGCAC	ref_5721_new	0	1	2	3	3	1	1	3	3	3
CTTGACCTCTAGAACA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CCTCGGTTCACAGAGG	ref_5721_new	17	31	19	16	23	21	22	15	22	26
CCCGGATTAGTCTGCT	ref_5721_new	4	4	0	1	1	1	7	2	4	1
ATGTGCAGCTATGTCA	ref_5721_new	50	55	65	47	46	44	60	43	62	53
CGAATCTCCCTTAATC	ref_5721_new	39	45	46	56	58	33	74	38	62	30
TTTTTTCGGTTTCCGT	alt_5721_new	39	39	54	45	20	31	30	19	35	23
CTTTAACGGAGGCTCA	ref_5721_new	79	88	72	63	76	54	81	59	96	54
GCTCACCCGTTCACGG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GCTTATTCTGCCTGTC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GATGCTCCGCGGGATT	ref_5721_new	6	7	12	11	16	10	12	5	13	14
TAACGTTGGTGGATAT	ref_5721_new	58	51	64	56	80	62	71	52	88	57
TTTGGGCGCTAGGTGA	ref_5721_new	2	2	8	4	6	4	6	2	4	8
AGCTCGATTTTTTTTC	ref_5721_new	4	2	7	4	5	7	2	6	7	3
CCAGATCTGCAAGCTC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CAGTTTCCTAGGCAGA	ref_5721_new	110	147	121	123	117	101	115	101	123	98
TCTTAGGTACAAAGCC	ref_5721_new	51	71	69	55	89	57	65	72	78	61
TTTATCCGGCACACGT	ref_5721_new	26	32	37	31	40	22	36	34	27	22
AGTATTCATTGATTGA	ref_5721_new	4	4	1	2	10	6	8	1	3	1
CTGAGTAAATGTCTTA	ref_5721_new	12	15	9	9	15	5	22	11	23	8
TAAGCCATTACTTTAT	alt_5721_new	9	8	6	13	10	17	12	9	8	9
TAATTTGTTAAACCTC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AATTATTTACCGAGGC	ref_5721_new	11	7	9	7	10	15	11	3	12	11
TACCCACTTATGGCAA	ref_5721_new	18	11	11	9	19	6	11	12	15	6
GGTACACTTTTATAAC	ref_5721_new	9	8	8	10	18	12	16	16	15	8
AAAATGGCTGCCTGAC	ref_5721_new	85	51	100	76	44	78	60	86	48	66
CCTTACATTATGTCCA	ref_5721_new	11	11	8	7	15	9	13	5	11	7
CCTCTTTCGGGCCCCT	ref_5721_new	0	21	5	1	21	5	33	7	30	3
TAGTAAGTGTCTAAAC	alt_5721_new	13	17	15	18	22	7	21	21	29	13
TCTCACCCCCTTGCAT	ref_5721_new	28	28	30	32	34	27	30	24	42	32
CTCGACTAGACCCATG	ref_5721_new	9	13	6	16	12	8	16	11	15	8
CCAAGGTTCAGCAAAT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CCCCATCTAGCTCTTT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GGTCGCATCGTGCTGC	ref_5721_new	21	30	18	18	16	12	18	21	23	14
AATCGACTCGGTAACT	ref_5721_new	4	12	15	5	9	8	13	6	6	7
AATACGTACTGAGCTG	ref_5721_new	16	16	19	30	19	18	17	15	27	22
AACTTTTTAGTTGTCA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTCGATGTTAG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTACCGATTCTTAAGT	alt_5721_new	60	74	66	52	62	48	78	42	69	41
CTAATGGCCTTAGCGT	ref_5721_new	116	131	80	81	105	78	103	84	110	92
GCACGGTGATGAGGTA	ref_5721_new	45	25	40	36	39	36	52	20	37	36
CAGCTGTAGTGAATCG	ref_5721_new	47	60	67	43	82	53	64	56	92	37
CTAAGATCCGGCTGTC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AATGTACTTGGTCTGC	ref_5721_new	22	26	30	15	25	19	38	20	30	26
GAAGGTTACCGATTAT	ref_5721_new	4	4	2	1	3	4	3	4	4	1
TGTTTGTAACTCTTGG	ref_5721_new	62	55	61	60	58	41	64	50	72	50
CTACGGTTGTGCCTGA	ref_5721_new	40	35	33	26	46	26	38	30	35	23
GGTTCGCAGTCACCGT	ref_5721_new	28	29	45	30	34	26	31	28	41	25
CTGCTGCACAGCAATA	ref_5721_new	39	46	51	42	38	25	39	30	31	29
CTACTGTAATTTGCTG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TACCTAAATCCTTCTT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GCGCCCCGTCTAGAAA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GAGTAGGTAGTAAGGT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTTCGGTGTCGCGGTT	ref_5721_new	37	50	37	41	31	40	49	27	44	27
GATGTCACTATTCATC	ref_5721_new	18	22	22	8	26	10	15	14	21	13
GTCGTCTACTCCAAGC	ref_5721_new	28	32	25	13	43	20	37	19	38	17
CCGCTGGGATATAAGC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CTGCGCGAGAGACTCT	ref_5721_new	22	28	34	20	45	20	26	18	24	20
ATTCCTTAATGTCTAG	ref_5721_new	24	41	34	20	26	23	31	14	32	31
CTTATCAGCGTCAGAA	ref_5721_new	25	21	28	26	35	15	32	31	26	18
AGCCGTATTGCGACCA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GTTTCCCTGAATGAAG	ref_5721_new	8	5	5	1	3	1	4	2	1	3
GCCTTTCCTCGTCGTG	ref_5721_new	10	12	10	5	10	6	4	4	14	4
GCGGAAGAATGGTCGC	ref_5721_new	2	5	4	2	1	3	4	3	2	0
GTTGACTGCGCTCGTA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AGAATGTTTACGCATC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GCATGTGCAGTGATGA	ref_5721_new	30	40	38	29	27	30	24	23	35	20
CGTTAGGAATGGACAA	ref_5721_new	27	49	36	36	37	38	44	29	45	33
TGGGGACTACATAATT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTGCAGTATGCGTGAG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CGCCACTTGGTACATT	ref_5721_new	32	34	29	29	31	28	32	16	32	24
CTCATCAGTGTTAACA	ref_5721_new	28	51	28	27	39	50	61	34	59	25
GACAGTGTGATTGATG	ref_5721_new	4	6	6	8	6	4	6	4	10	6
GTGCCTTCCGAGTCTA	ref_5721_new	18	16	24	18	28	19	21	16	21	11
TTCGTTAGCATCTTGC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TAGGCACATTCTAATC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CAGCTTGTTGCTCGTG	ref_5721_new	2	2	1	2	3	1	3	2	4	1
CGCACATAGGTCGTAG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AATGCCGGTACTTAAA	alt_5721_new	4	2	2	6	7	2	5	4	4	2
TACCGCTCCCTGCTAA	ref_5721_new	47	71	37	43	97	38	71	63	70	42
TGGATACACGGATCAT	ref_5721_new	39	53	46	44	52	48	61	54	55	41
CAATGGGTCCGCTGTA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TGCCGTCTTATTCGCT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CGCGGACCTAAACTCC	alt_5721_new	80	102	100	72	122	89	119	85	122	83
GGTGTAGAGGTGCATC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTGCTCGGTATTTGAG	ref_5721_new	24	39	36	42	39	26	39	26	45	27
AAACGTATGCTGCTGC	ref_5721_new	48	46	61	51	44	39	62	36	50	29
CCCAGACTATGGTCGG	ref_5721_new	13	16	27	33	40	21	25	18	32	18
ATGTCGGGGTCTGCAT	alt_5721_new	8	15	22	10	13	11	13	17	10	10
GTTACTGAGAATGCTA	ref_5721_new	60	61	68	39	53	55	46	46	56	45
GCTCGCCATTGACCGT	alt_5721_new	4	12	16	11	18	9	22	6	24	13
TATTTAAAGAGATGGT	ref_5721_new	11	24	23	26	27	19	20	14	28	30
CTGCTTACCGTTGCGT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TAATACAGCGGAGTAA	ref_5721_new	84	93	96	90	105	75	87	73	86	61
AACCCATGACATTCCC	ref_5721_new	16	16	16	8	20	5	23	24	27	19
ACTTTCCTGGCCGTCT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
ACAGGTGTTATTACGA	ref_5721_new	68	82	84	76	69	68	100	73	80	74
GTGGGTACGCTATATG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
ATAGGTCTTCTGTAGG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GCTTTTTCTGCCTGTC	alt_5721_new	91	128	105	100	135	93	124	84	144	100
TTTCAATTTTCAGGTT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TTACGTTTCGTAGTCT	ref_5721_new	41	63	47	35	52	39	51	33	49	21
ATACATCAGACCCAGC	alt_5721_new	22	40	50	24	30	32	33	29	36	31
TGATCATCACACACTT	ref_5721_new	12	9	16	3	5	15	12	12	10	6
GCTTTGTGCATTCATT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTTATAGTCCGGTATT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TAGGATCTCTGCTGTG	ref_5721_new	32	32	29	34	42	29	34	35	50	39
AACAACGAACAGTTTT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
ATTATGGGATGTCTAA	ref_5721_new	25	37	53	30	44	32	23	32	33	20
ATTTGCAAGGCCTGGG	ref_5721_new	4	11	6	6	4	6	9	7	6	8
TAGCTAGTCCACAGGC	ref_5721_new	17	17	22	22	11	12	20	7	22	17
GTCATTGTAATTTTGG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CGTGCAAACTGGCTTA	ref_5721_new	9	14	5	5	9	11	14	11	12	18
CGTTTGTTGGCGTTCT	ref_5721_new	24	16	25	19	18	16	18	19	26	15
TGCGATTCGAATCCAC	ref_5721_new	41	43	33	37	39	24	40	30	41	31
GTTCTCCTCCTGTTAT	ref_5721_new	49	64	58	49	85	42	81	28	66	38
CAATAAGTTGAAGAAC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CTCAATCGTGGCCATT	ref_5721_new	4	14	17	12	17	11	15	11	19	5
CTTTAGGTCTGTCTCG	ref_5721_new	22	48	28	19	18	19	44	24	29	30
GCCCACTTCGAGCTCC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTCGTACATGCTATTG	ref_5721_new	1	2	4	1	2	2	2	3	0	0
GTTTTGTAATATTTTT	ref_5721_new	22	19	20	24	20	18	12	18	15	25
GCCTTAGCGTAATCTG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTTGTATTGTCGTGGA	ref_5721_new	51	39	37	43	41	33	55	38	53	42
CAACTCGCACCGTTCG	ref_5721_new	5	14	10	10	28	13	27	15	17	11
AATCATTGCAGGAGTT	ref_5721_new	8	7	7	5	11	4	7	8	6	8
CGGTACGGCTATATCA	ref_5721_new	0	0	3	1	6	5	3	6	3	2
GAACGCATTGAGGGTC	ref_5721_new	38	63	60	45	56	48	58	49	64	44
ATAGAGGAACTGAGCC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GCTATTTCTGCCTGTC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TAGTATCAGAGGCAGT	alt_5721_new	28	28	33	25	31	26	37	35	34	26
ATTTAGGTTAGTATAG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CATTATACCAACATAC	ref_5721_new	7	11	25	11	22	9	17	5	15	6
CGCCGCCTATATTCAC	ref_5721_new	7	23	14	14	33	16	28	13	26	20
TGCATTAAGGTTGTAT	ref_5721_new	25	33	28	44	43	31	30	30	38	30
GATCCCTTTTCCTGCT	ref_5721_new	1	2	2	6	3	2	5	1	4	3
AGGCTGGTTAGGAACT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CGTTTATACAGAAGTT	ref_5721_new	6	15	9	4	12	15	13	12	20	5
GACTGAGTTAGGGGGT	ref_5721_new	14	13	15	5	17	13	15	14	16	7
CTGGTTAGCCGTTCGA	ref_5721_new	15	21	23	22	19	17	11	19	29	10
CTTCCGGTGTTTGCGT	ref_5721_new	4	2	5	1	8	4	7	0	2	3
GAGAGCTTCCTGTGGC	ref_5721_new	13	19	21	7	15	18	10	18	17	17
CGGATATTTAGCGATC	ref_5721_new	25	25	26	22	19	34	28	21	24	18
TTTCAGTACGGTTGTA	ref_5721_new	58	55	53	53	60	55	71	50	79	34
TGTAACCAATATTATC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CGGCTACTCCATTACG	alt_5721_new	52	62	58	46	66	59	62	68	68	47
TTCGACAACGGTCGCT	ref_5721_new	46	88	61	66	93	52	75	63	93	50
TGAGACCTGCGAGATG	ref_5721_new	24	15	24	19	22	18	11	10	20	11
TAGGGCAGAGTCTTCT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GGATAGGCCGCACTAC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
ACACCGATCTTATTTG	ref_5721_new	10	19	16	15	13	9	31	10	30	16
GTCGAGGTAATATGAT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
ATAAGGTCCGTTTCCG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTTCTAACGCTCACGG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TGAACTCTGCTTGGCC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GTTAAGATTTGCTTTG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GTGAACCAGGAACTGC	ref_5721_new	9	14	10	6	15	12	10	11	13	16
ACTTATTTCTGGGAAT	alt_5721_new	49	57	74	57	64	56	69	44	49	53
TTTTACCTTCGCCGAC	ref_5721_new	6	7	14	10	5	6	9	11	10	6
TACTGTGTCTCGGAGG	ref_5721_new	3	3	1	3	2	1	6	1	2	3
CTTAAACCCTGCATAG	ref_5721_new	65	95	99	65	98	76	103	90	91	69
GTCTACCGTTCGCGTC	ref_5721_new	28	55	59	43	61	33	64	44	55	38
CTGGTTGTTTCACGAA	ref_5721_new	22	20	21	20	17	14	18	17	7	14
CTAAAATGCAGATTTT	ref_5721_new	7	7	6	14	14	6	16	10	5	5
TGCCAGGCGAATTTTT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CTATATCAAGTGCCTG	ref_5721_new	2	1	3	3	3	1	1	1	4	3
CGTACTTAGTTACTGC	ref_5721_new	17	22	36	16	41	18	34	34	42	25
TCAAGCCTGCTCTATC	ref_5721_new	1	1	4	1	0	4	0	0	1	1
GCTACATCAGGTCATG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTTACTGGTATGGCCT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TCCGTAACCTTTTACA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GGGAGTGAGTACGTCC	ref_5721_new	3	2	4	5	15	8	6	3	9	11
AGCGCGCGGATGATTT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CATTTCATAGCGGAAG	ref_5721_new	12	13	10	18	17	11	9	16	17	11
TTCGTGGTTAAACTCT	ref_5721_new	20	23	46	32	25	46	45	35	45	31
TCTTCCCCGGAGGTCC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TCTCACTCGGTAACAG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CTGCAGTATCGTTCTC	ref_5721_new	6	12	12	9	12	5	10	6	27	9
AGACTGTCGTGTGATT	ref_5721_new	28	39	41	29	50	27	46	23	46	25
AACCGACTTTAGGTGA	ref_5721_new	18	26	26	19	18	13	26	16	19	12
TCTACTTTGCCATCAT	ref_5721_new	9	19	13	8	11	14	12	6	11	4
TCCTGTCACATTCGTT	ref_5721_new	25	11	22	18	23	9	22	11	24	12
CTGGACGGTCGATGTG	ref_5721_new	16	37	13	18	26	17	36	18	38	15
GGCTAGTTTCACATGC	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TGTGGTCTGGATCGCT	ref_5721_new	7	9	8	11	9	11	10	13	10	11
GGAGTCGTTGGTCAAT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CGCTTTATATTACTCT	alt_5721_new	64	73	72	56	69	39	77	69	57	47
GGAAGGTCACCGAATT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
TTACTCTCATGGGCCA	ref_5721_new	2	10	6	5	2	5	13	8	4	9
GTATTTGGGCAGGGAC	ref_5721_new	63	65	59	52	67	44	67	58	61	39
TATCTACTTCGACGAA	ref_5721_new	71	66	71	81	67	66	58	56	88	57
TTCCTTTTACCTCTGC	ref_5721_new	24	24	35	31	30	29	44	19	29	19
GATGTGCCTATTGCTC	ref_5721_new	19	20	21	25	25	23	42	26	24	20
ACAATTACGGAATCAT	ref_5721_new	47	43	48	45	40	37	41	37	40	38
ATGGGCTTACATACCT	ref_5721_new	8	20	16	16	23	6	25	15	14	7
CTGATACGACTCCCCC	ref_5721_new	12	22	20	15	17	13	20	11	19	16
GCGGCCACTCATCCGA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AGTGTTATTTGTAGCG	ref_5721_new	6	6	4	4	6	3	7	8	12	6
TAGTGATACTCCAGAG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
GGGTTGCGGCGACCGA	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AGGTTCGCTTTAGCCT	ref_5721_new	7	11	8	4	4	5	6	2	11	8
GGGCGTACGTCGGATA	alt_5721_new	85	99	112	104	119	94	106	87	124	96
GCGTTAGGGGTGTGTC	ref_5721_new	11	23	19	19	25	23	24	15	14	21
TGATTCGCACGCCTCA	alt_5721_new	30	32	32	35	27	25	26	31	37	23
ATCCGCGGAGGAGAAG	ref_5721_new	16	12	16	12	13	10	17	7	9	10
TGCCTAATAAGCATAA	ref_5721_new	151	170	194	170	158	151	207	168	173	135
TCTGCCCTTCTGGGGA	ref_5721_new	18	22	21	24	22	20	15	22	27	13
ATGCCTCACAAGCCCG	ref_5721_new	66	78	82	92	79	69	97	80	98	62
TTGACTGCTATTAACT	ref_5721_new	20	15	15	13	14	11	21	10	27	15
GTCCGAGGATGTTCGT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AGCCTCTGTTCCATAC	ref_5721_new	10	49	23	20	32	15	33	21	35	10
GCGGCGCGCTTTCCAT	ref_5721_new	17	27	44	43	42	37	41	27	50	38
GAAGGCACCACAGTTT	ref_5721_new	115	122	140	129	115	83	129	89	140	115
CTGATATGAGTGCGGT	ref_5721_new	28	57	31	41	49	35	68	25	66	24
TCGGTCGCTGTGCCCG	ref_5721_new	5	28	16	6	26	11	29	5	41	15
CTTATTATCATGCAGC	ref_5721_new	1	1	4	1	0	1	0	2	2	3
GTTAACATGACTACTT	alt_5721_new	1	0	1	0	0	1	1	0	1	2
TAGGGTGCAAGACAGG	ref_5721_new	10	15	18	12	15	11	15	6	8	14
TTTTATTATCAACTGT	ref_5721_new	0	0	0	0	0	0	0	0	0	0
AACGTCTGAGGCCATG	ref_5721_new	0	0	0	0	0	0	0	0	0	0
CGCCTTTTACTATTGT	ref_5721_new	2	5	4	1	4	3	1	1	3	1
GCCGGCGTTATCAAAT	ref_5721_new	7	4	9	7	9	4	3	5	7	4
CTATCGGGCTCTTAGG	ref_5721_new	15	15	12	13	14	12	12	13	10	11
TTCTTACCAACTCACG	alt_5721_new	141	198	153	167	217	136	234	124	221	144
CTTAGCTTAAGGATGC	alt_396_RC	26	55	40	45	54	34	70	33	54	33
CCGAGCTGATCTAACC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CATACTTGGTTGAATT	ref_396_RC	14	7	18	13	8	18	21	12	11	16
GGGTAGTTCCTTAAAG	ref_396_RC	7	7	12	3	0	10	3	4	11	6
ATATCTAATTAAGTTT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TTAGACTTCACTTAAA	ref_396_RC	23	48	34	36	33	32	32	23	41	27
GCCTTGCTCCTAATCG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TTTGGAATCGGATTAA	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CTGTCGATTCAGATCA	ref_396_RC	77	93	98	86	72	88	79	81	110	62
GACACTCCCTTCCTCT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CGCGGGACCTCCTCGC	ref_396_RC	4	3	8	6	2	8	4	2	4	2
ATATCATGTGTTTACA	alt_396_RC	62	65	74	60	73	53	68	58	79	45
CGCTGGTAATATATGT	ref_396_RC	30	32	30	21	28	30	37	14	26	22
CCCCCAATATAACCAA	ref_396_RC	16	29	26	29	32	16	37	23	41	21
TGGAGATCCTTGACTC	ref_396_RC	21	20	27	25	30	13	29	19	24	21
TGTTCCCCTACTACGC	ref_396_RC	35	23	23	24	28	19	32	19	29	22
GGATCCTATCCTTGTA	ref_396_RC	86	64	107	98	97	86	93	97	92	84
AATCTCGTCAATGGCA	ref_396_RC	27	20	35	28	18	25	23	19	20	9
AGTTTCGAACTTTCTT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CTCGAGCGTCAGCTAG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CCTTCGATGCTCCAAC	ref_396_RC	7	12	12	11	8	4	7	8	8	8
CCTTGTCTCCGTTGAT	ref_396_RC	12	19	12	13	20	9	19	12	21	8
TGAGGGTTTGGTGCTA	ref_396_RC	19	13	10	18	13	17	11	14	14	13
TTCAGGTTTGGTTATC	ref_396_RC	13	13	13	9	16	10	9	10	10	8
ACCGTTTCGTTTGTAG	ref_396_RC	29	41	41	29	33	18	31	23	42	23
CTGTCTCCATCCCGTG	ref_396_RC	82	102	114	97	92	79	118	66	92	63
TCGGGCTCTCCTGTCG	ref_396_RC	61	35	68	46	43	32	48	39	50	54
GCGTAGAACTGTATCG	ref_396_RC	55	41	40	29	41	32	35	41	39	28
GTGTTTCCACTGTAGG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TAATATATGCAATCTG	ref_396_RC	8	3	9	14	10	4	5	8	12	2
TACGTTCTACGATACT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CCATTACCCTTAGAAC	ref_396_RC	30	37	32	35	34	23	28	36	35	19
GTCTACTGACAAGCTT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CGATCCGTAAGATAGC	ref_396_RC	137	184	204	152	192	136	200	166	203	127
ACTTAATTTTATTTAG	ref_396_RC	23	23	24	28	20	23	24	16	24	14
ACAGATAATGCACCCA	ref_396_RC	12	12	16	6	13	15	8	8	7	11
AAAACCCATTATTATA	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TGGATCTGAGTGAGAG	ref_396_RC	132	118	146	123	135	125	118	138	121	119
CGAGCAATCCCGCAAA	ref_396_RC	28	22	33	28	25	28	24	20	29	22
GTGATTTTGTATCGTA	ref_396_RC	46	41	53	59	51	50	44	37	49	48
TCTTATCCGCCAGTAT	ref_396_RC	30	29	44	28	29	35	24	22	44	27
TCTCCTCACCGTACAA	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TGCGGATCGAATCGAG	ref_396_RC	89	78	104	63	58	74	85	66	100	63
CTGGTTTTCTGATCGC	ref_396_RC	43	43	67	46	49	40	45	38	59	34
CTGCGGGCATTCAGGT	ref_396_RC	18	22	30	28	22	25	28	24	35	22
CGCTCACGCTGAATCC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GGAGTTGGGGAGGTTT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CCATCCCCAGATTTCC	ref_396_RC	44	48	61	61	54	55	55	46	76	40
GTGTCCTATACGTCTT	ref_396_RC	33	43	34	43	37	20	40	31	31	38
GGCCACCGTTATCTTC	ref_396_RC	47	50	38	45	45	45	51	24	46	34
GGACGGATTCTTGCGG	ref_396_RC	9	17	13	10	13	14	15	12	13	11
CGTTCGGCCAATCTCT	alt_396_RC	46	19	53	57	42	55	39	49	43	47
CTGTTAATAGCTTCCC	ref_396_RC	2	1	6	6	5	4	5	1	5	2
TGTGTTGAGCGGCCTT	ref_396_RC	24	18	20	21	18	16	15	14	11	16
CTCGTTTACTAATGTA	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CATCTAGAAGTTGTCT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GCTTATAACCTGATTA	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CGCTCACGCTGAATTC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CCAAGCATCTGCAAAG	ref_396_RC	26	29	25	20	28	20	24	21	30	16
GAAATACCTCAATTCG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TAGGACTTACGACCCC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TTCTCCACTTAAACTT	alt_396_RC	65	54	70	76	57	60	57	65	57	49
TGGGGTGGGAGAATTT	ref_396_RC	15	13	13	13	17	15	10	11	14	6
CCGTTCTTTTCCTTCA	ref_396_RC	31	22	39	26	27	21	41	32	29	35
ACATTACCAACGAGTC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTATCGGCCGCG	ref_396_RC	13	15	13	24	22	9	18	12	14	12
CGGCTCCCCCACCGCG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
CGGCCATACACACTGC	ref_396_RC	17	27	24	16	27	21	32	10	43	13
TGTGGTTTACGCGTAC	ref_396_RC	18	22	28	21	24	19	25	20	19	12
ATTATCAGCCTTGTAG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TCAGATTGCCGATACC	ref_396_RC	58	43	66	59	45	44	65	43	70	37
TAAACCTGGAAGTAGT	ref_396_RC	59	43	40	59	45	38	39	52	57	36
TCTAGCGGCTTGTCGA	ref_396_RC	3	6	4	2	4	2	7	5	5	2
GTCCCACAGTCAGTCT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GCGATTCAGGTTTAGT	ref_396_RC	9	20	13	10	15	6	15	16	15	9
ATCTGACTGGTAGCCG	ref_396_RC	14	22	21	27	18	6	31	22	35	13
CTCTCCGTATTCATTG	ref_396_RC	2	20	12	4	20	4	12	6	19	8
CGCATAGGCTTTTAGG	alt_396_RC	155	163	165	158	169	134	162	159	172	171
TCTCTTCATTCGAAAG	ref_396_RC	29	27	36	31	42	33	31	27	39	25
CATAGCCTTTGTGCTC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TTCCTAGTTTTTCCCC	ref_396_RC	9	17	7	11	15	7	19	8	17	8
GCCATAGCGTGTCCCG	ref_396_RC	4	3	7	10	1	3	2	5	1	1
GTCCCACAGGTCAGAC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GAAGTTTGCAGTTGGA	ref_396_RC	59	53	76	52	60	65	64	55	48	52
GTCTAAGTTGGGCGTC	ref_396_RC	59	68	89	66	59	72	59	48	64	52
GTACGTACTTTTTTAT	ref_396_RC	11	7	10	9	2	8	3	5	6	5
CCCTCGGTGTAGCGTT	ref_396_RC	75	92	117	103	90	84	104	69	99	62
GGACCTTCCGGGTGGT	ref_396_RC	20	29	25	20	18	25	20	16	15	19
TGAACGTTCCTCTGAG	ref_396_RC	42	31	45	49	57	40	42	54	57	44
GTGGTTTAGATTTCGA	ref_396_RC	100	95	110	83	82	95	99	81	91	86
CCTAAAGAGTTACCCA	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GTTCTATTAATCGAGT	ref_396_RC	18	15	11	12	9	15	9	21	17	9
TACCGAGTCGGCAGAA	ref_396_RC	211	172	265	220	187	229	198	220	185	193
TCCTTGCATTCGTTTA	ref_396_RC	74	76	81	64	67	54	74	56	85	46
TTAATGCCCGTAGTTT	ref_396_RC	6	7	7	8	7	9	3	1	5	6
TGTATAGCGCCAGTGC	ref_396_RC	88	70	135	98	84	119	87	91	105	80
TCTACCGGGTCCGCGT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GCATAGCAGTTATTCA	ref_396_RC	48	60	60	61	62	66	72	39	54	47
AGGATTCCCCAATTAC	alt_396_RC	46	57	70	67	53	53	61	58	48	45
AATATGCGCTCGAATT	alt_396_RC	204	194	265	232	193	180	215	176	197	177
TGTGTCACTACGATAA	ref_396_RC	53	35	49	35	61	49	44	50	50	42
GGCCGCATTACTCAGC	ref_396_RC	148	127	166	147	174	148	170	124	187	145
TTACCTCTAAATCAGC	ref_396_RC	106	87	123	106	81	113	85	81	103	77
ATACCTATGACATCTA	ref_396_RC	178	225	257	214	221	214	241	201	240	184
CCTGGGGCAGAGCGTT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TTAACCAGATTTGTCC	ref_396_RC	56	71	83	93	82	80	73	76	61	68
TCCACCCGCCAGTCGC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TTGAAAACGGAACCGT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
AAAAATTTACCGTCAC	ref_396_RC	13	13	27	17	20	18	18	18	15	12
TAGCTCGGGCCGTCTA	ref_396_RC	19	16	21	20	15	18	31	22	28	12
CCTTCCTACCCTGGCT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GACGGAGCCGTTTTGG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TTTCATCTAGTCCGAG	ref_396_RC	45	35	65	55	47	39	52	43	35	50
GCTGCGTTCGAGCCTC	ref_396_RC	0	0	0	0	0	0	0	0	0	0
TGGCAGAAAGAGGTTG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
AGGGAACTTTTTAGTG	ref_396_RC	29	26	28	19	35	16	30	30	42	28
CCCACTGCGGTGCGGT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
ATGTGTCAAGGTATGT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
ATAAGGGTGTTATGTA	ref_396_RC	17	29	31	27	32	26	30	18	12	20
CCGAATGGAGCATGGG	ref_396_RC	2	1	1	4	3	4	4	2	3	0
CGATCCCAGCGCGAAG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
AGACATGCTATGTGGT	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GAGACGCCTTTGTAGC	ref_396_RC	58	52	62	52	37	45	57	51	55	55
CCACCCAAATCTGGGC	ref_396_RC	50	34	53	45	33	31	44	35	45	41
GGAGCCAGTTTCGGCT	ref_396_RC	114	101	138	102	116	113	95	115	138	112
GTTACTCACTGGGGGC	ref_396_RC	33	35	38	35	25	29	18	33	27	33
GGCTTCTTGTCATGAT	ref_396_RC	36	42	43	36	44	33	41	40	48	41
GGTACTAACTGTGTAG	ref_396_RC	0	0	0	0	0	0	0	0	0	0
GTTTATTGCTCGGAAC	ref_5201_upstream	2	4	0	2	2	1	1	0	2	0
ATTATCAGTTTGTCAG	ref_5201_upstream	1	5	3	1	4	1	6	0	4	1
TGTTTGTCATCAAGTT	ref_5201_upstream	4	10	10	4	12	1	8	4	4	6
ATAAGATTCACCTCAA	ref_5201_upstream	9	11	15	19	11	10	9	14	10	17
AAACGTACTTCTATGC	ref_5201_upstream	6	14	9	8	10	2	18	11	12	7
CCCTACGCCAAAGACT	ref_5201_upstream	152	212	185	137	176	120	196	111	216	116
TGGGGAAAATATAAAT	ref_5201_upstream	30	26	26	29	34	31	29	28	37	28
ACCGTGCCTATGTGTT	ref_5201_upstream	7	21	11	12	17	9	12	9	13	10
GTTATAACTGCCTACG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGATTAGCGAGGA	ref_5201_upstream	23	13	25	20	10	16	19	22	23	37
AGCCTCTACTATAGAT	ref_5201_upstream	40	36	51	40	46	31	35	35	42	39
CGCTTTTGAACCCGTT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
CGCGACCGACCCACAT	ref_5201_upstream	20	20	27	36	29	22	13	20	25	22
ATCTGACACTGTTGCA	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
ATTATGTATTTCACGT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGCGTGATAACTC	ref_5201_upstream	6	3	7	4	5	7	2	5	4	3
CCGGCATAAAGATATG	ref_5201_upstream	21	14	26	34	15	26	35	17	30	23
GGCTTACATATGTGAG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
GAAATTCTTGGTCTTA	ref_5201_upstream	3	1	1	0	3	0	1	1	0	1
ACTTGTTTGTGTGTCC	ref_5201_upstream	73	67	69	52	65	65	57	48	74	50
GTGCTTGGCCAAATTT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
AGCATTGCGGCATAGA	ref_5201_upstream	18	25	23	11	21	20	13	13	13	15
TCGCGGTTCCCCCTCT	ref_5201_upstream	5	5	4	9	4	2	3	5	2	4
GGCTCAGTCTGAGGGA	ref_5201_upstream	42	36	49	38	37	40	30	34	22	33
TTAGGATTGTTTCGGG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TACCACTACCCTTGTT	ref_5201_upstream	7	6	9	4	7	5	6	2	9	2
CTTCAGATTCGCGCAA	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
GGATTGTCTTGGATCC	ref_5201_upstream	17	23	25	17	19	16	24	10	29	20
ACATTCTAGGAACCAT	ref_5201_upstream	25	26	13	23	27	15	22	18	24	30
CGAGAAGCAATGACCC	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
CCATTTAGACTTAGTA	ref_5201_upstream	7	5	5	7	6	9	10	11	8	2
GTTACTAGGCGGTAAC	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGATACCTCGTTT	ref_5201_upstream	8	9	11	9	11	7	7	3	5	10
GCCCGGCTCGTTTGGG	ref_5201_upstream	8	22	15	8	14	22	11	11	16	7
ATACAGTCCTACATTA	ref_5201_upstream	48	53	61	35	50	41	51	30	57	33
GCCTGTTTCGTTTGAT	ref_5201_upstream	44	41	40	25	42	35	33	28	47	23
AGTCCGGCCCAAATGA	ref_5201_upstream	107	69	109	106	87	78	93	82	79	75
TTCGATCTTTCTTCTT	ref_5201_upstream	154	103	196	141	128	148	120	136	116	139
ACATATGATCGAAAAG	ref_5201_upstream	31	28	33	31	35	29	33	35	20	25
GATGTCTACTTGACAA	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTACTCAGTCGG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTCGCATATCGAC	ref_5201_upstream	12	19	14	15	24	8	21	6	14	7
TACCTCTGGGTACTTA	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TAACTACAAGCCAGTA	ref_5201_upstream	48	63	51	62	70	31	61	32	72	38
CTAGTCGTTGATCCTC	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
GATGTCCATGCCACTT	ref_5201_upstream	33	34	44	26	34	27	19	38	32	23
TATTAAGTTGACTCTC	ref_5201_upstream	9	20	15	14	16	14	25	19	18	11
ATTTTACGGGCCACCT	ref_5201_upstream	26	31	37	28	35	32	33	32	48	20
ATCTTACACGTGGGTC	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTGCCCATTTTTC	ref_5201_upstream	35	80	62	60	77	39	64	39	58	30
TTGGCTACACACACTG	ref_5201_upstream	21	33	30	24	30	24	27	24	30	22
TTTGGGGGAGTTTGTG	ref_5201_upstream	139	144	187	133	145	145	167	125	180	140
GAATCCCATAACTCTG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
GGTGACTCCCCGCGTG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
ACCACTGCCTGTGCCG	ref_5201_upstream	16	11	13	7	10	19	8	21	10	11
CCTACTATCTGAACCT	ref_5201_upstream	3	6	3	3	7	2	1	4	11	0
ACAACTATAACGAATT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TAATAGACCCATATCT	ref_5201_upstream	25	13	17	13	17	17	9	10	19	8
TGGGAGCCGCCCGAGG	ref_5201_upstream	22	20	26	22	18	13	14	23	25	12
GCTTCTGAGCTCCGGG	ref_5201_upstream	54	58	71	45	57	43	33	41	60	43
CGAGCCAGTGTTGGCG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
AGCATCTGTTACCCTC	ref_5201_upstream	21	27	25	27	24	15	31	14	21	25
TCACTAAAGGTCTATT	ref_5201_upstream	31	34	41	29	37	32	59	36	58	31
GGTCGATTTTATACTT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
CACAGTGTGTTCGTTT	ref_5201_upstream	26	23	26	24	25	17	24	16	29	25
GAGCCTCGGGATTTCT	ref_5201_upstream	8	7	7	4	11	9	14	7	20	11
TTCTTACGTCTGTGGA	ref_5201_upstream	10	13	13	18	13	12	8	13	16	8
AGACCGGGAGTTCTAT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TACCGATTACGATGTT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
AGAAGACCCGTTTCTG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TTGACATCCGTACATG	ref_5201_upstream	68	66	102	76	51	63	68	65	83	56
GTTACTTCCTGTGCTC	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
CCCGGTACGCCGAATA	ref_5201_upstream	4	9	2	6	11	3	7	3	9	1
TTGCCCGGGATTTTTG	ref_5201_upstream	17	29	30	25	32	28	30	19	21	18
ATCTTTCGTGCAGCAG	ref_5201_upstream	6	10	18	10	11	9	19	7	14	12
TCGTGTCTCGGTAAGT	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
ACCTAGGTGTTTTCCG	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
TAACGCAGCCATTTGA	ref_5201_upstream	24	41	32	26	28	24	25	20	34	22
TTATCTTAAATTCGGG	ref_5201_upstream	163	142	215	145	193	146	165	146	180	152
TTGACGTTCGTCGGCA	ref_5201_upstream	15	14	17	18	16	16	23	10	12	20
TCATTCCGGTAGCCGG	ref_5201_upstream	68	80	100	73	92	62	82	78	108	71
TTATGTTTGGCTGTTT	ref_5201_upstream	58	54	62	59	53	53	72	48	69	41
CCGTTCGATACTGATA	ref_5201_upstream	7	7	4	7	5	6	12	7	11	3
TTCATTTTTTCTCCTC	ref_5201_upstream	52	34	54	39	58	48	56	40	54	44
ACTCTCTCTCCCGGTC	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTGTTTACTATAG	ref_5201_upstream	32	22	28	33	26	19	31	25	27	25
ATCTCAAGATCTCCTC	ref_5201_upstream	30	32	37	37	38	26	23	38	39	27
CTCACTGTGTTCCAGA	ref_5201_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGTGGGCACAGTC	ref_5201_upstream	15	21	23	19	28	17	37	20	32	21
AACGGACGTCTTGCTG	alt_5032_fdr	45	18	31	34	18	23	12	30	18	28
TATGCCATCCCGGACA	alt_5032_fdr	32	46	53	33	42	44	47	43	28	31
ACGCTATTCGCTTTCA	alt_5032_fdr	40	34	44	29	37	22	18	24	24	21
TAACTGTTCTAGTCAT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTCATTTATCCCCACT	alt_5032_fdr	97	91	171	139	84	117	95	116	145	108
TTCGGGCACACCACCC	alt_5032_fdr	12	6	13	13	15	11	13	11	9	10
GGAATTGCCTGTGGAC	alt_5032_fdr	63	59	82	68	73	44	56	55	57	60
TTTTACGTTTTATAGC	alt_5032_fdr	68	68	95	72	63	59	61	73	50	68
AGAGCTATAAACCGTT	alt_5032_fdr	76	81	113	113	77	107	106	83	73	101
GCAACCTTAGAGCGTT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTAGCATTGTATA	alt_5032_fdr	17	17	43	23	20	37	22	30	43	21
CCGATCCTAGTGGTCT	alt_5032_fdr	17	21	29	23	18	13	21	18	24	21
GTCCTTTCACCTTACC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATATTTAAAATATTTG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGCCAGTACCTTA	alt_5032_fdr	13	47	19	18	48	12	48	6	47	10
GGTAATAAGGATAGGG	alt_5032_fdr	3	12	12	6	6	11	14	8	12	8
GCGGCCTTAGAAACCG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGGCGGTGGTCTG	alt_5032_fdr	68	41	90	63	47	76	55	53	65	72
TTAGTCTAGTTCTTTC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TAATACACCGGGATGC	alt_5032_fdr	7	3	6	8	3	3	4	4	9	3
GGGTCATAAACCAGAA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGGGGAATTTTCC	alt_5032_fdr	207	167	230	187	197	223	206	204	222	187
TCACATAATCTGTCTT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGCCAGAATGTTT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TATGAGCTGCAGGTGG	alt_5032_fdr	139	128	210	173	135	175	146	163	145	139
TGGCTATCATACCCCG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGCTCAGCATGC	alt_5032_fdr	68	51	70	60	54	61	44	69	51	40
ATCATGCTATCGCCTG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGCGGGGGTCTGC	alt_5032_fdr	111	74	99	127	63	98	74	92	68	81
CCTAGCAGATCGTTAA	alt_5032_fdr	13	16	15	19	23	17	32	12	28	17
TTTCATCAGTAAATCG	alt_5032_fdr	25	35	42	39	24	34	26	31	39	35
TGGTAGTAACTTCGAT	alt_5032_fdr	29	21	48	41	33	40	44	26	43	32
GTACGCCCTGCCTGAA	alt_5032_fdr	55	28	41	35	23	35	36	36	25	29
TAGCCATCGATCAGAT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCCCACTCTTTCC	alt_5032_fdr	43	45	69	53	43	62	56	41	42	39
TTAGCATCTATCTTCC	alt_5032_fdr	22	26	27	27	36	28	33	30	11	36
AGCGACTGTCATTGTA	alt_5032_fdr	21	10	12	16	13	15	14	18	15	14
CCAGTCAACTTTGCCG	alt_5032_fdr	14	31	14	19	32	8	35	14	40	9
GGGGTTGAGGCTTTGT	alt_5032_fdr	45	28	24	30	31	22	29	20	35	25
TTGCGTCGTCTCAGTC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTAAACTTCTGGA	alt_5032_fdr	73	56	100	82	94	79	68	65	67	71
GGCATCCAAAAGGCAG	alt_5032_fdr	51	46	52	52	40	38	29	37	38	43
TTGTGTTCGTCTTTAT	alt_5032_fdr	41	40	42	42	35	41	45	39	51	39
TGGCCATTGTGATACC	alt_5032_fdr	51	29	36	39	40	43	45	47	35	21
TCCGAGTATTCTTTCA	alt_5032_fdr	53	49	35	34	39	33	36	35	27	31
TCGGTCATTTTATTGC	alt_5032_fdr	289	260	369	350	285	290	298	295	304	273
TCCTAATATAGGTCTG	alt_5032_fdr	7	19	12	11	7	15	13	11	16	13
CTCCTTGTCGCACTGA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTCATTTTATTGC	alt_5032_fdr	2	0	0	0	0	1	0	0	0	0
ACATCAATAGATTAGC	alt_5032_fdr	33	26	52	29	22	38	27	19	24	20
TCTGCCTTAACAAGCT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
AGATATCGTGGTAATA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGTTTCATCTATT	alt_5032_fdr	52	49	57	56	39	39	35	40	54	35
GCTTTGTACCCAAATT	alt_5032_fdr	57	45	71	68	54	45	43	50	54	51
GATGTCCGCGTTGGCT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTCACGATGTTTTTTC	alt_5032_fdr	119	82	181	137	69	157	91	108	94	145
ACTAATGCGGACGTTT	alt_5032_fdr	9	13	10	15	14	15	10	14	12	13
TTAAATGGCTTTACTA	ref_5032_fdr	102	90	163	128	126	117	108	122	103	112
TCAGAACTGGAGAACT	alt_5032_fdr	16	11	10	15	10	9	13	14	18	9
TTCGTAAACCCATAAT	alt_5032_fdr	14	17	12	12	21	10	14	14	11	18
TCTTCCGTCAATTGTG	alt_5032_fdr	38	52	37	36	46	48	38	32	47	26
TCGGTCTCTTCTAGTT	alt_5032_fdr	2	1	3	0	1	0	1	0	1	0
GACTGTAGTATGTGGA	ref_5032_fdr	27	15	58	43	19	26	34	30	31	25
ACACACTTATACTTAT	alt_5032_fdr	41	24	52	45	35	52	41	43	32	44
TATGATTCTCTGTGCG	alt_5032_fdr	245	237	303	285	287	256	231	250	267	228
AGCGACCGTAGATCTT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CTAGTCGGTACTCTGG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTTCTAGATTATT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
AATTTGCTTATTATGT	alt_5032_fdr	85	76	147	107	95	87	94	93	61	86
GTAAGATATGCATATG	ref_5032_fdr	68	55	74	67	68	71	69	83	61	60
AGTTCGGCAATTTTTG	alt_5032_fdr	35	41	53	38	44	27	37	38	37	25
TTACTTGTAATCGGCA	alt_5032_fdr	58	30	53	59	42	53	47	63	47	33
TTCGGCGTTTGAGCTG	alt_5032_fdr	10	17	13	21	9	19	12	7	14	14
TATTCAACCGTGCCGG	alt_5032_fdr	3	10	5	4	12	5	6	2	5	3
CGAAAACCATCACGTA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTCGTTACCGCTC	alt_5032_fdr	37	37	80	74	52	44	61	49	59	46
ATCTGCCTGTGTTCAT	alt_5032_fdr	32	35	51	42	34	36	32	35	27	25
CAGTTCTGGTCTCGAG	alt_5032_fdr	12	12	16	20	7	3	13	12	5	6
ATGTCACGATTCTCTG	alt_5032_fdr	30	37	41	42	28	44	21	26	37	40
TCTTGTCCCGTATAGT	alt_5032_fdr	20	21	33	27	27	30	37	23	29	24
AGAGCCGATGTAGCAG	alt_5032_fdr	21	19	38	18	23	26	31	25	22	34
GTTATTGCGGCGCAGG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGTGTGAATCCAG	alt_5032_fdr	21	17	22	18	17	22	18	20	11	15
TTTATCAACCCCTCCC	alt_5032_fdr	110	110	134	132	109	120	112	98	123	110
TGATGGTAGACCGCGG	alt_5032_fdr	24	22	29	27	21	36	24	26	19	20
CTTAATTCACTTCAGC	alt_5032_fdr	12	15	18	15	6	13	11	12	22	11
CTCCATCCGCCGTGTT	alt_5032_fdr	11	7	17	11	3	7	13	18	13	6
ACTGACAGCCGTTCGG	alt_5032_fdr	9	11	10	2	11	6	13	5	10	7
TCGAGGTTGCTTCTTA	alt_5032_fdr	8	12	12	14	9	14	6	12	7	15
AACTCCCAGCCCGTTA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CGACGAGCTTATAGCG	ref_5032_fdr	52	49	77	55	50	82	53	56	53	56
GATGCTGAATGTGGCT	alt_5032_fdr	91	82	115	95	64	93	90	87	89	82
ACTGCACCCGCAGCGT	alt_5032_fdr	69	60	101	75	60	74	57	53	58	48
GAAGTCATTATTGCGC	alt_5032_fdr	66	61	65	70	42	66	85	45	77	53
CTTTTTCAAGCAGATC	alt_5032_fdr	3	3	11	1	2	5	4	0	1	3
TATTGGAATATAGGTT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
AGTATATTCGTCGCAA	alt_5032_fdr	25	26	19	22	15	19	12	13	29	20
ATGCGCAATCGAGAAA	alt_5032_fdr	7	6	7	5	5	7	6	5	4	9
TAGAACGTGCCGCGAA	alt_5032_fdr	67	67	113	91	84	101	61	99	94	73
TGTATCTGGATGCTAT	alt_5032_fdr	116	77	103	95	65	103	72	100	84	85
CGCGGCCTTGTACCCG	alt_5032_fdr	19	39	31	25	23	14	31	16	28	24
GGCATTGCGTTTACTC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GCTCACCGAATGGATA	alt_5032_fdr	12	18	22	11	21	10	14	14	13	17
TGAAAGTTATTCTTCG	alt_5032_fdr	19	15	31	24	15	22	15	34	18	24
TTGACCCAATTTTCGG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCAACGATACAGG	alt_5032_fdr	37	33	68	50	49	46	38	54	46	43
TCAATCTTTTGTTGCC	alt_5032_fdr	35	41	57	41	39	43	32	53	37	47
TCTCAAATTAATTCCT	ref_5032_fdr	75	40	77	62	52	49	39	55	60	56
ATCGAGGGCCTCAGAC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGAATTGGACAGC	alt_5032_fdr	9	8	11	7	4	9	9	12	10	9
TAACGGCCCCCTCTTG	alt_5032_fdr	68	57	74	58	58	67	58	60	47	46
GCATTAACCGGCTTGG	alt_5032_fdr	96	82	113	106	71	91	91	94	73	89
TTGGACATTTATTAAG	alt_5032_fdr	6	8	10	7	5	7	10	9	7	5
ATCCTGCGCTTTCTGT	alt_5032_fdr	25	17	29	27	14	33	11	28	29	24
CAGAAATTTACCTGAA	alt_5032_fdr	19	19	22	24	13	24	30	13	19	19
GGTTCTCCTCCATGGC	alt_5032_fdr	38	55	50	43	53	38	70	44	49	35
GCGCGTTAATTATAAG	alt_5032_fdr	85	68	90	69	74	78	61	93	81	77
AACAATAGATATCTGT	alt_5032_fdr	177	119	182	168	108	158	128	135	116	118
GAGTGTTGGTTGGTAT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTGCATATCGTTAGCC	alt_5032_fdr	12	7	14	11	5	6	8	9	11	8
GATATTCACTTACATG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
AAAACTACTTTTCATG	alt_5032_fdr	81	85	108	112	81	107	73	91	105	83
TCGCGTTCGTTTAGAT	alt_5032_fdr	16	18	20	27	12	16	19	15	20	18
ATAATTTACAATACCG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TGACGCCTCAAGTCCG	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTTGAGTCTGAAG	alt_5032_fdr	86	76	110	89	75	73	62	86	75	79
GGTGCTCCAATGACTA	alt_5032_fdr	8	16	14	9	13	10	13	8	13	16
GTTAGCGAGAATACTG	alt_5032_fdr	22	19	24	23	17	15	27	27	24	27
GCTCTGCAGGTTTCCC	alt_5032_fdr	10	7	10	14	6	5	7	7	12	8
TAGGCGGATTCGTAAT	alt_5032_fdr	57	73	73	78	66	42	52	83	61	76
AAGAGTTGTGTACTAC	alt_5032_fdr	189	129	215	158	128	168	142	132	130	120
GGTGATTGACGTACCA	alt_5032_fdr	86	92	122	97	86	115	95	97	101	108
GGTGCTAAGTTACCCT	alt_5032_fdr	31	22	31	26	16	39	41	23	23	23
TGTCTTCGATCCGTGG	alt_5032_fdr	44	31	54	52	45	65	32	47	35	44
CCTTACAGTAGTAGTT	alt_5032_fdr	23	19	27	22	25	17	22	18	21	21
AACTCCCCAGGCACAT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCGAATTGGCTC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TGAATCAAGTATGTTG	alt_5032_fdr	145	112	168	121	137	146	114	124	121	133
ACCAACCACTAAATGT	alt_5032_fdr	24	67	25	38	77	24	91	32	90	26
TAGTGTGTTACGCTGT	alt_5032_fdr	33	44	49	39	25	34	31	24	34	28
CATTTTTGCACCATCA	alt_5032_fdr	64	42	73	62	52	65	58	49	61	56
TACTCACAACTCGAAC	alt_5032_fdr	30	46	57	50	45	30	46	28	45	33
CTTGCTCCTGTGGTAA	alt_5032_fdr	55	39	55	59	31	42	48	53	48	35
AAACCTCCATGAGAGC	alt_5032_fdr	37	36	50	59	45	48	36	45	35	35
CAGTAGGGATCCCCAC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGTAGGAAGAGAG	alt_5032_fdr	27	23	37	32	26	30	35	29	25	22
TGTCCCTTGGAGTTTG	alt_5032_fdr	21	28	25	18	18	20	26	16	22	19
AACGGGACTCTTAGTC	alt_5032_fdr	49	43	43	47	30	47	39	55	34	42
CCCAGCAATCCCGACG	alt_5032_fdr	5	1	3	0	1	0	1	1	5	0
CGCTCTAATATGAATT	alt_5032_fdr	49	49	92	84	66	48	69	45	59	52
CAAGTGTTGATTCTAA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
AATTAGTGGCTGATTC	alt_5032_fdr	385	342	408	417	333	352	320	307	376	325
GAGCGTCTGGCTGATC	alt_5032_fdr	6	14	12	13	14	11	6	3	10	15
ACGAGCAAGTTTCGTC	alt_5032_fdr	38	41	50	38	24	48	20	38	20	36
TTTGTAAAAATCATGT	alt_5032_fdr	66	80	97	67	65	71	64	58	91	53
CAATGTCATTTAACGT	alt_5032_fdr	22	29	24	29	24	25	23	25	26	18
TATGCATTCATAAACT	alt_5032_fdr	12	20	27	21	12	14	15	23	18	14
TGAAACCTAGTGCACG	ref_5032_fdr	229	208	240	215	195	217	237	220	210	168
TTTATTAATTTCCTCC	alt_5032_fdr	8	6	4	10	7	7	9	11	5	6
AACGAATACCCATGAG	alt_5032_fdr	77	66	106	69	94	72	85	84	75	79
GGGCCATCATTGCCAT	alt_5032_fdr	2	8	1	1	4	3	7	4	15	1
GTTCGTTAGCTTGACC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTATTGTCTTCGC	alt_5032_fdr	1	1	4	4	1	1	1	2	3	1
ATTACGCCGTCTCAAG	alt_5032_fdr	86	74	97	82	82	70	96	109	112	83
TACTGTGCGAGCGGGG	alt_5032_fdr	48	44	48	56	63	48	41	44	48	52
GAAAAGCCGTTGGGAT	alt_5032_fdr	38	23	41	40	32	29	21	31	20	30
ATTAGGCCGCTCTAGA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GATTTGGGTAATCTTG	alt_5032_fdr	19	32	30	26	23	23	26	22	26	27
ACAGCCGTCCCCGGGA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTGATTTCGTTCC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGCTTTATGCCT	alt_5032_fdr	15	16	19	21	12	18	16	15	22	9
TCATTGGTTTGATTGC	alt_5032_fdr	8	7	5	17	15	8	12	9	9	9
TGATGCCATGTAACGT	alt_5032_fdr	19	9	16	21	13	11	12	21	12	21
CACTTACTTTATCCAG	alt_5032_fdr	60	49	70	36	29	51	54	62	61	42
ATCCTTAGCTGTTTTA	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CACGCAGCGTGACGAA	alt_5032_fdr	19	19	24	20	13	28	25	9	13	21
CAATTCACCGTTCCCT	alt_5032_fdr	24	29	24	19	13	15	7	12	19	15
TTCAGCTTTACGTATT	alt_5032_fdr	34	29	35	33	30	28	19	28	24	29
AGAGCGATCGTGGGTT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CACTTTATTGTATAAC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TCATGACTCAGTGTGC	alt_5032_fdr	18	10	20	24	17	13	6	20	7	13
GCGCTACCGTTGGCTG	alt_5032_fdr	6	8	5	7	6	11	13	2	7	9
TTCGTTTCGCAGTAGT	alt_5032_fdr	22	34	33	24	20	32	18	20	20	20
CGCCGTTTTTAATTAT	alt_5032_fdr	7	20	25	13	20	10	20	17	19	18
TAAGATGTTCCGGTGT	alt_5032_fdr	39	46	35	43	24	28	27	18	31	20
GTTTGCATCCGAGAAT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TCACAACCGTTGTCGA	alt_5032_fdr	53	73	66	69	61	56	64	51	81	58
AGTATTATTTATAGTT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TATGATAATTCGAGCT	alt_5032_fdr	49	32	45	49	50	35	18	44	38	34
CGTTCTTGTAGCCTTC	alt_5032_fdr	5	4	8	5	3	3	2	11	8	6
GGCGTGATAAAACGCG	alt_5032_fdr	28	24	36	28	26	41	31	33	29	22
CAGTGCTCAGCTCGCC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGTTGAGAACTCC	alt_5032_fdr	13	21	28	22	12	27	10	26	10	21
TCGTTCCCATAGGCAT	alt_5032_fdr	43	22	25	24	22	24	17	28	31	29
ACGCAGTCGAGCCTTC	alt_5032_fdr	8	10	4	7	8	13	8	9	15	10
TGACCAGTTTATCTGG	alt_5032_fdr	53	63	78	77	72	50	54	61	64	55
GCATAAATTTGAATCT	alt_5032_fdr	14	6	10	8	8	9	11	10	3	11
GCTTTACTACAATTTT	alt_5032_fdr	38	31	36	39	37	38	33	27	35	29
TTCATGCTATCGCCTG	alt_5032_fdr	230	238	305	225	227	201	255	221	225	212
AGCAGATACCTCCTCA	ref_5032_fdr	105	67	127	102	71	93	91	80	94	82
TCTCCAGCGCTTGTAC	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATGAAAGTAGCGGCGT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
CATGGAGTAGCTGGAC	alt_5032_fdr	32	36	46	42	32	33	38	31	28	22
CGATGTTACATGTTAT	alt_5032_fdr	36	21	17	32	21	38	28	28	22	29
TCCCTGTATAATTATC	alt_5032_fdr	10	11	19	10	10	10	26	11	21	13
GCCCATTCTGGAATTA	alt_5032_fdr	32	20	24	17	27	27	19	18	31	14
TATTTTACTGTACCAT	alt_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTACGGGTCTCAT	alt_5032_fdr	29	29	53	42	36	39	37	54	38	26
TGAGATAATTTAGGTG	alt_5032_fdr	79	93	117	123	116	87	108	91	111	89
CTAAGCGGGGTCCGTT	alt_5032_fdr	0	2	2	2	0	2	3	0	5	2
TACGCAATGCAACCCT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TCTTCCAGAAGGGTAA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TATGTAAATAATTTGT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
ATATCTGGCCACTTTC	ref_2099_RC	22	55	32	31	38	23	46	34	26	33
ACGCCCTAATCGCGAT	ref_2099_RC	48	42	69	54	52	52	75	49	63	47
TTCACCGCACCTGTAA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
CTTCGTATAATCAATC	ref_2099_RC	3	5	7	2	2	3	4	1	2	4
CAGTCTCCGTGTGACA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GCGCCGCGGCCATACG	ref_2099_RC	16	16	8	14	11	13	16	10	12	5
GTACCGTTCTTTGAGT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TCGCCAACTTTGACTT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GTCACTCGTTTTCTAT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TGTTCGTAGATGAGGC	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GGGCTGCTCTGGTCCG	ref_2099_RC	43	42	51	37	43	41	48	49	52	34
ACTGAGAAGTTTCTCC	ref_2099_RC	260	278	305	294	300	255	262	246	291	255
GGAGCTGCGTTAATTG	ref_2099_RC	15	16	20	12	14	14	12	19	15	21
ACTGCATGACCAGGCG	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
AGGTCTCCCGGGCCCA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TAAAGGTTGTATACCT	ref_2099_RC	13	14	16	13	13	20	24	22	14	11
CCGAGACATTTGGGTA	ref_2099_RC	20	23	25	16	17	28	29	21	22	16
CGCCTCGTTCGAATTT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GCTTCCTCGAAGTATC	ref_2099_RC	7	16	19	12	10	13	17	16	11	20
TTATCTCACTCACTTA	ref_2099_RC	31	31	45	23	37	26	32	24	32	20
GTATTAGCTGCCCACG	ref_2099_RC	26	21	25	15	19	12	16	19	15	12
GATACTCGCATAAATA	ref_2099_RC	38	45	26	41	43	29	35	40	46	44
GGTGGTGTGGGATCCG	ref_2099_RC	104	93	101	117	89	93	80	66	102	73
TGCGTGCCTTTAAGCT	ref_2099_RC	50	37	40	44	34	41	43	26	48	20
CACTGACAATTATGCG	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
CAGTATGTTATCGTGC	ref_2099_RC	12	23	31	21	38	24	26	27	28	23
AATACTAACTGCCGGA	ref_2099_RC	58	47	54	44	47	48	57	48	50	37
TCCTATTTACCATGTC	ref_2099_RC	13	20	27	29	20	21	13	19	10	10
ATTCCTACGCTCATGA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GCAGTGCGTAGGATAA	ref_2099_RC	5	3	2	1	6	3	5	0	1	0
CTTTATTGGATTCGGT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
AGCGTTCTCACCATAA	ref_2099_RC	82	60	94	61	66	71	82	66	76	37
CATCCCATCAGACAGG	ref_2099_RC	11	31	25	24	22	6	34	16	23	17
CCTCCCGCTGGTATGT	ref_2099_RC	14	14	21	16	9	6	11	6	18	13
GACATTCAAGCCATTC	ref_2099_RC	16	11	23	20	17	16	17	20	11	10
CTCATAGAGCCTCCAC	ref_2099_RC	51	65	92	56	69	52	57	48	56	58
GCACCGATAAATCTCG	ref_2099_RC	5	2	5	10	1	5	5	6	4	4
AGTCTGCAGCTTTTGA	ref_2099_RC	51	47	63	40	55	53	61	50	54	46
ACCACAGAAGCGGACT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GATGTTGCGCGTCTGG	ref_2099_RC	18	12	3	6	8	5	11	11	3	8
TTGTTCTGCCTCTCGT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TCCGATTTTGATGGCT	ref_2099_RC	5	4	3	4	4	9	3	4	2	3
TGTTTCTTCCGCTTTA	ref_2099_RC	29	42	70	60	40	53	53	47	35	54
GTAAACATTGGCCTAT	ref_2099_RC	42	40	38	39	36	37	39	34	47	47
TGGGATATTCACGTTC	ref_2099_RC	56	35	52	55	37	56	36	36	32	38
TTCCAGGGAATATTGC	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TTTAATCATTGATTAT	ref_2099_RC	28	24	31	27	24	25	27	29	22	28
TTGTTTATGTTCATGG	ref_2099_RC	3	7	5	7	7	6	14	4	14	2
ACTGGATTGGTCAATG	ref_2099_RC	59	100	72	71	71	67	67	63	65	63
GTCACCGGTTGCCATC	ref_2099_RC	17	35	43	27	41	17	44	21	60	23
TAATTTGTATTGTCGC	ref_2099_RC	10	4	17	18	8	12	19	11	19	8
CTCGATTCTCCTACCG	ref_2099_RC	34	32	22	14	33	15	31	11	33	15
TTGTTTCCGCATTAAC	ref_2099_RC	21	37	36	32	25	35	23	27	35	24
CTGTGATGGAAAATTC	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GCGGTCACGTTGGCAG	ref_2099_RC	81	74	77	80	93	99	86	87	91	75
CATAATACTTGATCCG	ref_2099_RC	56	47	76	56	61	74	61	53	62	53
CGATAATTTAACTCAA	ref_2099_RC	24	16	28	33	41	27	44	23	26	19
TGCAGCGTCATTATGC	ref_2099_RC	6	12	12	14	10	7	8	3	8	11
TTTACTTCACTAGCAG	ref_2099_RC	55	63	72	49	41	68	50	59	70	42
TTGTTAGCATTGATGA	ref_2099_RC	75	60	74	66	55	68	64	64	61	61
TTATCCAATTCGGATC	ref_2099_RC	5	15	9	21	17	7	18	13	12	18
CGCATATGACAAGTTT	ref_2099_RC	19	17	32	25	20	23	14	22	17	14
CCACTCTTTCAGACTT	ref_2099_RC	1	3	4	2	6	1	8	3	5	3
TCAATTCGTTGGAACT	ref_2099_RC	22	24	15	13	24	16	22	14	19	18
AGAATCATGTAGGTAC	ref_2099_RC	35	40	46	49	35	40	39	29	41	37
GTCAGGCTTTTGTCTA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TTCCTGTTACGATCAA	ref_2099_RC	7	11	8	15	14	13	15	8	22	21
ATTTGTTAGTTCTTTC	ref_2099_RC	20	12	18	36	25	13	22	17	22	20
TGTATGATTTTACCGT	ref_2099_RC	0	2	2	0	5	0	5	1	2	0
GATCACAATTACCCAA	ref_2099_RC	11	11	9	11	12	5	17	5	11	7
GTTCGATCACGTGGTA	ref_2099_RC	47	70	76	68	77	57	58	51	79	39
ATGAGATGAGTGTATC	ref_2099_RC	10	10	18	9	6	8	11	5	12	11
GTTCCAGTTGTGTTTG	ref_2099_RC	15	16	15	17	20	14	13	11	24	10
TGTGTTCTGTGGACAG	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TTGGCTATGAATAGCA	ref_2099_RC	206	204	285	186	198	202	198	211	247	165
GGTACCTTGTTTCCTT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTGTGCCCGCTT	ref_2099_RC	36	47	43	50	45	41	52	42	37	36
GCACGTCACATACTCC	ref_2099_RC	43	49	73	59	65	69	56	44	50	40
GTGGCGGCTCAGCTCA	ref_2099_RC	97	85	115	102	109	95	96	82	110	81
GCTGAATCTTGGGTAA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TCCCGTGCGGCATACA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
AAGGATACGTGTGACT	ref_2099_RC	9	21	9	15	13	5	13	9	10	19
CTAATCTTTCAGGTTC	ref_2099_RC	5	5	9	3	7	1	2	4	3	1
AAATTTCCTTTGCCCC	ref_2099_RC	7	10	10	15	18	20	12	13	12	13
CAACATCTACCAGGTA	ref_2099_RC	14	11	12	13	5	11	13	13	17	8
CAACCGTTTGTTGCAG	ref_2099_RC	146	228	155	152	217	142	181	156	182	161
ACTAATTTTTTGAGCA	ref_2099_RC	66	78	84	83	86	82	86	92	112	67
TGCTAAGCCGATCCCC	ref_2099_RC	201	192	272	217	270	231	271	220	264	198
TCATTCTTAATCCGAT	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GCAGTTACCCATAGAG	ref_2099_RC	33	42	42	49	37	34	46	29	55	29
TAGGGTCCTGCAGCGA	ref_2099_RC	16	13	12	15	14	11	13	23	7	20
CTTGATGATTTTACTC	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
TTTAACCAATCAGAGA	ref_2099_RC	23	27	24	26	21	26	29	32	18	16
GACATGGGGAGGTTCC	ref_2099_RC	90	103	107	100	100	87	107	91	95	102
TCCGGCCGGGCTTCAA	ref_2099_RC	0	0	0	0	0	0	0	0	0	0
GCCTCGGGTAGCAAGT	ref_2099_RC	51	70	51	54	36	47	39	41	44	36
TAGTCTTAAATACGAC	ref_2099_RC	1	1	4	5	3	5	4	0	4	0
AAGCAGGTCTTGATAT	ref_2099_RC	9	6	5	9	9	6	5	9	6	6
TTGACACAGACTCTGA	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGGACGTGTATGT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TGCAACCCTCCAGCAT	ref_378_fdr	291	185	285	257	192	279	186	236	178	229
GTTAGTCAAGTCTCTC	ref_378_fdr	93	61	127	98	72	83	66	104	65	116
GTGTACAAGTTAATGG	ref_378_fdr	10	4	10	7	3	9	5	10	3	11
CAGCTCCGTCACGGCT	ref_378_fdr	140	130	156	140	133	112	116	101	138	111
TTAACTTCCTGTGCTA	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GGCACGTTAAGAATTC	ref_378_fdr	4	6	13	8	3	6	3	4	3	5
TCGCCATCGTCGGACT	ref_378_fdr	9	16	8	11	20	6	20	8	22	11
TGTCTAAATGGGCACC	ref_378_fdr	50	30	72	57	22	51	36	58	40	44
TTGAAAGAATGTCGAA	ref_378_fdr	67	38	80	55	49	57	38	57	42	43
TGAGTCCCACGCCGTT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
AATATCAATCTGCACT	ref_378_fdr	11	6	10	15	6	7	8	11	6	12
AATATTACTTTGCCCT	ref_378_fdr	29	18	31	30	20	25	27	33	20	32
CTCTGGCCATGTTTAG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CATACGGTTTAACCCT	ref_378_fdr	98	76	136	118	66	99	71	85	64	95
GGTCGCCGAGTTACGG	ref_378_fdr	107	46	108	78	75	91	73	113	60	73
TAAACCTTTTTTCGCC	ref_378_fdr	67	45	73	65	45	48	38	54	45	42
CATATGATATTCGACT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GACCATTCGTTCGCAG	ref_378_fdr	33	17	34	36	22	31	24	26	30	23
CCGGATTGTGTGCTTG	ref_378_fdr	11	11	5	7	10	4	13	3	7	3
ACGAGTGACTTCTCAT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCGCGTGTGTTTC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CCTAAGCACGGAGCTC	ref_378_fdr	66	41	74	86	46	81	59	65	31	78
CATATCTGCTATACTG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCGTCCAACGCGA	ref_378_fdr	56	27	65	46	27	35	42	33	27	53
TGGGCCTGCGGGTGCG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
ATCACTAGAGCTAGCC	alt_378_fdr	21	21	34	27	20	22	23	27	19	20
CCCCAGACTACGCTCT	ref_378_fdr	44	23	48	34	43	32	22	42	28	39
ACAGTTCACTCGGCAC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGGTTGTTAGAT	alt_378_fdr	88	32	99	48	41	72	45	46	39	42
CCGCGGACGTTCAGAG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGACCTTCAGCTC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAGCTTCCCGGTT	ref_378_fdr	56	30	53	65	41	53	40	41	45	36
TGTAGCCTGTTTTTCA	ref_378_fdr	40	40	65	60	49	56	33	37	37	46
AACCCCCGATGGGTTT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TCATAGTCACACGAGG	ref_378_fdr	35	16	31	34	27	23	12	33	19	26
GAGGAAAATCGGTTGC	ref_378_fdr	27	25	45	45	18	33	32	53	33	39
CCAGTACCGTCAGGAA	ref_378_fdr	72	57	63	50	49	64	56	71	51	47
GCCACTCTCATTGCTA	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTTCAGCTGTCGG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TGCATAAGCCGCCTAC	ref_378_fdr	95	63	140	101	87	86	58	95	69	101
AAAGGAGCATGCTTGC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGGCATCTTACAT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GTAATGCCTGGGGTCT	ref_378_fdr	27	11	33	15	16	23	19	24	19	28
TTATTAACCCTAAATA	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CGCGCGTGGTTAGATC	ref_378_fdr	16	13	19	26	8	15	15	17	18	11
GCTTGTGGCAATCTAC	ref_378_fdr	9	20	7	10	15	3	13	7	14	7
AAATGTTCAGTATGTG	ref_378_fdr	138	72	176	131	85	120	77	135	91	96
TCTCCGCCGCGTACGA	ref_378_fdr	16	3	22	18	18	13	13	12	6	24
CCGGCCATTCCAAGGC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GTTAACGGAATGTTTT	ref_378_fdr	0	1	0	0	0	2	0	0	0	1
GGAAGGCCGACTTTCC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TTAGAGCGCAGATGCA	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTGGTATCGTATG	ref_378_fdr	69	60	107	73	52	84	51	75	72	79
TCTCGCCGGCTTGGCT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCTGAGACTTTTG	ref_378_fdr	22	12	47	28	17	28	25	19	19	28
TTGACCCTCCCTCAGC	ref_378_fdr	78	39	100	58	53	88	55	78	50	76
GGCACACGCTGGCCAT	ref_378_fdr	1	2	0	1	0	2	0	1	1	1
ATCTATGATTCGCCAG	ref_378_fdr	18	7	20	7	5	7	12	7	18	19
CCGCGCCTCCCTTATT	ref_378_fdr	271	144	317	273	141	224	157	228	169	227
ATCTCTCTAGTAACAA	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTATTTTTTTGGG	ref_378_fdr	9	8	13	7	11	11	7	11	9	10
AAGCAGTAACTCGAAG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGCCGCTGAAACA	ref_378_fdr	58	51	100	70	40	41	43	85	58	60
TGAACGGCATCAAGTG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GACCTTATCTGACTTA	ref_378_fdr	108	75	124	108	103	95	90	99	71	71
TCATTATGGACCTTTG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGTAGGTAGACTC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGGTAAGCCATCG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TTTGAGTAACGGGGAG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTTGACATCTGCA	ref_378_fdr	24	20	21	27	23	14	18	26	14	16
GCACTTGTCATTTGAC	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGTAAGATTTTTC	ref_378_fdr	12	6	8	14	4	11	7	11	3	2
ACGCCTTAAGCTATGC	ref_378_fdr	44	55	68	69	43	57	43	61	53	53
TTTCCTACGACAGTAT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CGGCGTTGGATCTGTG	ref_378_fdr	126	71	143	122	65	148	88	110	79	111
TCATACTGTATAATTC	ref_378_fdr	12	6	16	17	9	9	5	11	8	11
ACACCGGGATTTCTGG	ref_378_fdr	59	45	71	56	34	55	41	39	41	45
TAATCGGTCCAATACG	ref_378_fdr	21	11	22	20	9	26	11	11	10	14
CCCGCTGTCACCATCG	ref_378_fdr	21	14	20	16	10	20	13	14	25	20
AACATACCTACCCCGG	ref_378_fdr	7	18	8	6	13	9	12	7	10	6
TTCCAGGGCTATGGGA	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGATAGCGCCTTC	ref_378_fdr	3	6	4	3	2	2	3	5	3	0
TGTTGGAGTAAGGTAT	ref_378_fdr	11	7	12	16	11	20	7	9	5	5
GTGCAATCATACTTCT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GAGTAGGTCGGAAACA	ref_378_fdr	18	9	22	22	15	11	13	15	15	21
ACCTAGGCTTGTTTTC	ref_378_fdr	46	50	66	80	51	74	65	56	47	40
GAGCATTGCAGGGTGC	ref_378_fdr	49	46	66	49	35	70	41	53	33	59
TTTTCTTCGAAAGCAT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TGTACGGATACTGATC	ref_378_fdr	101	74	123	116	77	78	82	99	69	97
TAACCCGTCTACATCA	ref_378_fdr	257	210	352	315	151	299	231	210	261	221
CATTCTGTTAGGGTCA	ref_378_fdr	103	42	113	80	76	79	57	105	69	99
TGCGGGTGGCGTAGTT	ref_378_fdr	57	34	70	55	31	49	29	60	45	37
TACCTATGTTGTTGGA	ref_378_fdr	84	55	94	89	55	73	74	64	64	89
CGCTCGGTCATATATT	ref_378_fdr	48	41	54	42	27	40	26	51	39	31
AAACTCCTTATGTATA	ref_378_fdr	13	12	16	19	11	14	4	12	3	10
CTCCGGGGTTGCCACG	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTCCAGCTTTTT	ref_378_fdr	32	24	40	36	24	35	36	23	23	28
GTTCATTATGTGCATT	ref_378_fdr	6	4	14	6	5	7	7	9	5	8
TGCCGCAACGGGGTAT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGCCCTTGACCTA	ref_378_fdr	96	58	78	90	56	77	57	65	52	69
AACCATCCCGTGCATA	ref_378_fdr	43	32	50	43	39	41	40	46	36	42
TATCTTCGACTATTTA	ref_378_fdr	136	116	176	141	86	119	144	105	133	131
TTCATCCTCCGTAGAT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
ATCACGGGACTTCATG	ref_378_fdr	45	36	60	48	38	62	27	60	38	46
GAGGACACGACGCGGC	ref_378_fdr	30	31	52	48	29	48	29	42	22	42
TAAGGTGCTACTTTGA	ref_378_fdr	15	10	7	15	10	11	13	12	10	7
TATTCGAATATTGTAT	ref_378_fdr	69	37	76	91	51	60	45	50	49	65
TGCACCCCTCCAGCAT	ref_378_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGAGACACGGGCT	alt_840_negative	52	90	60	61	121	61	122	51	109	47
ATGATTCTATACTTTT	alt_840_negative	36	49	43	30	41	24	67	30	58	29
CTACATGTTTTTGCGT	alt_840_negative	47	145	74	56	127	45	140	38	161	56
TTGTCCCTGCATATGA	alt_840_negative	32	70	40	37	75	33	76	46	46	34
TTGGGCTAACTGTATG	alt_840_negative	15	41	19	22	50	26	44	20	40	22
TATCGCCTTAGGGTTT	alt_840_negative	2	3	1	11	6	6	10	5	10	4
GAGGATTCTCTCGACA	alt_840_negative	55	79	73	72	97	55	108	55	112	28
GTATGCTTTCTACCTG	alt_840_negative	44	132	63	53	122	58	132	53	142	52
ACTCCCCCGTAGCGGC	alt_840_negative	0	0	0	0	0	0	0	0	0	0
CTTAGCGTCAGGTGCT	alt_840_negative	7	26	7	11	13	10	19	5	15	2
ACAGACCTACTGGCGG	alt_840_negative	11	23	15	8	20	7	18	18	15	5
GACCACTACCTCATTT	alt_840_negative	169	146	213	173	182	168	199	161	185	161
TCTCTGTCCACCGGTT	alt_840_negative	102	211	125	97	189	91	218	95	237	86
CAGTCCCGGTGCCCTG	alt_840_negative	0	0	0	0	0	0	0	0	0	0
ATGATATATTGTCCCG	alt_840_negative	0	0	0	0	0	0	0	0	0	0
GTCCGCCTTTGTTCTA	alt_840_negative	57	90	64	57	85	31	85	37	101	47
TCCTTGGGTGTTTGGC	alt_840_negative	34	81	55	43	72	50	104	34	98	33
TTCATTTCTGAAATCT	alt_840_negative	81	133	79	64	146	72	159	80	182	51
GCGTATCTCCTCTGCT	alt_840_negative	0	0	0	0	0	0	0	0	0	0
CTAAGGGTGGTTGTAT	alt_840_negative	85	165	108	84	178	107	157	87	192	83
CATTTAGATGCCTTCT	alt_840_negative	40	58	50	40	68	36	85	21	64	46
TCCGCTATTTGAGCGG	alt_840_negative	37	116	59	43	110	36	119	60	86	40
TTTTAGAAGGAACTTT	alt_840_negative	19	56	51	32	56	25	58	28	65	26
CATCACGGGGTTTTAG	alt_840_negative	25	30	27	21	42	25	58	19	53	14
CCCGTGGAACAAAAAT	alt_840_negative	36	81	27	32	88	23	86	31	79	22
CTATTCAACGAAGGTT	alt_840_negative	10	40	30	19	38	16	31	11	34	15
GTGTTGGCTAGGCTAG	alt_840_negative	128	255	178	110	316	120	291	120	327	118
AATTACTGTCACCACG	alt_840_negative	43	108	43	62	110	69	120	62	132	42
TTAGATTTACGAAACT	alt_840_negative	8	5	6	7	11	5	12	6	8	1
TATACTTCTCGGGTTC	alt_840_negative	19	44	32	25	39	19	33	22	36	25
AGCCCGCTCTTATGGT	alt_840_negative	7	14	11	6	12	8	16	7	15	8
GATAAACGGGTATCGA	alt_840_negative	0	0	0	0	0	0	0	0	0	0
TAAGTGTTCGATGCTA	alt_840_negative	6	14	9	4	14	6	13	14	11	9
GCATTCTAGTGTAGCT	alt_840_negative	131	229	156	113	257	118	256	121	267	106
TACATCTCCTCGGCAG	alt_840_negative	61	103	51	47	94	38	109	41	100	42
TCACCCGACTTCCTGC	alt_840_negative	0	0	0	0	0	0	0	0	0	0
TTATTGCCACCGCAAG	alt_840_negative	12	15	16	26	32	15	24	10	17	16
AGATATTCTAGACATG	alt_840_negative	0	0	0	0	0	0	0	0	0	0
CGCGAGCTATCGCTTC	alt_840_negative	17	27	23	31	33	19	37	24	40	16
TGAGATTCGATGCGTG	alt_840_negative	15	30	12	17	26	18	38	21	33	23
GGATGAGCTACTGTAT	alt_840_negative	4	8	1	2	12	5	8	1	9	2
AAATTTGTATCGGATG	alt_840_negative	62	86	66	58	84	43	74	48	82	47
TAAGTAGTTTTTGGCC	alt_840_negative	0	0	0	0	0	0	0	0	0	0
ATATATGTTAAGCAAT	alt_840_negative	0	0	0	0	0	0	0	0	0	0
CTCCATATCAATGGGC	alt_840_negative	0	0	0	0	0	0	0	0	0	0
AATACATTAGATATTA	alt_840_negative	7	17	9	7	10	3	9	5	11	5
CCGATTGGGTATATTT	alt_840_negative	15	83	30	25	90	25	82	27	102	11
GGGTCGTTTACTTTAG	alt_840_negative	34	77	67	34	80	41	96	37	68	48
GGTTATGCTAGAAAGG	alt_840_negative	5	14	10	8	28	6	29	2	17	10
TTCTCCTCAAAGTACC	alt_840_negative	6	14	6	12	23	11	23	10	13	9
GACCCCGCGTTCAAAC	alt_840_negative	0	0	0	0	0	0	0	0	0	0
TATCCCGTATTGTACT	alt_840_negative	4	6	12	9	12	6	11	2	20	9
GTTTAAGCTAATGTTC	alt_840_negative	24	38	20	17	38	24	34	17	43	18
ACTGTGACTACCTTCT	alt_840_negative	16	46	34	20	59	21	54	21	53	16
GTCCGTACTTGTTGGA	alt_840_negative	61	105	59	47	98	50	119	32	129	49
CGCCTCAGGGAGCTAT	alt_840_negative	0	0	0	0	0	0	0	0	0	0
ACGCGGTGCTTGTAGT	alt_840_negative	24	42	17	29	53	22	48	26	61	14
GCTCGCACATGAACAC	alt_840_negative	54	92	51	52	93	47	74	47	90	47
AGTGATTAGTTCGGCT	alt_840_negative	47	71	35	58	76	47	52	44	77	37
ACCATCTAGGTCTTTA	alt_840_negative	36	69	39	25	75	40	91	29	75	36
GTCAAGTATACGCGGA	alt_840_negative	0	0	0	0	0	0	0	0	0	0
TTCCACCATCCTTTTA	alt_840_negative	8	50	10	7	31	10	37	3	44	14
GATTCGTAGGCCTCCA	alt_840_negative	56	107	80	72	119	78	118	78	116	53
AGGGGGTCATATGCTA	alt_840_negative	59	83	49	46	83	65	102	54	108	46
CTGGTCTGTGTTATCT	alt_840_negative	15	24	23	15	46	10	33	14	33	10
CCCGGTGCGTTCATAC	alt_840_negative	40	84	45	33	75	55	75	33	111	26
ATGCAACCAGTACCGC	alt_840_negative	18	45	33	16	33	16	38	17	44	22
TGACGGGAGTATTAAA	alt_840_negative	26	38	27	27	60	37	59	19	50	21
ATGCTTCCATAGAAGC	alt_840_negative	71	131	96	61	136	73	157	74	148	81
CCAGGTTAAATCGTCG	alt_840_negative	13	5	0	2	8	3	5	4	2	6
ACGCCCCTGGCCATAT	alt_840_negative	14	20	11	15	21	16	19	10	28	8
GATTCAACACCTGAGG	alt_4574_reverse	37	26	54	35	24	18	36	39	48	28
GGCAGAACGTCAGGGA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
AAACCCCTTCTGTTTG	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GCACGGTTCGCGGTCT	alt_4574_reverse	4	1	2	0	1	2	4	2	2	1
CGTGGAAGCTTTATAA	alt_4574_reverse	57	39	69	58	43	63	47	59	53	49
AGGGGGGGCTTCTTTA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTGGGTCACTTAA	ref_4574_reverse	78	77	99	89	109	74	117	83	108	84
TGTCTTATGCTTCAGT	alt_4574_reverse	7	8	8	8	9	11	6	11	5	12
AAGCCGTTCCTTAGCT	alt_4574_reverse	13	14	3	14	16	9	16	14	17	8
TATATCGGCAGTCATA	alt_4574_reverse	64	51	107	59	66	72	74	64	72	48
CAGATTCACCGGAAAC	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTCTGCGGACAAT	alt_4574_reverse	1	0	1	0	0	0	0	0	1	0
TCCGCGTTTCAAGAGT	alt_4574_reverse	128	155	119	96	139	124	164	97	137	112
TGGTTATCTTTCTATA	alt_4574_reverse	93	63	97	68	70	82	74	79	74	57
CGGTCATCTCGTGTCC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCGATATATCAGC	alt_4574_reverse	58	48	59	44	58	46	65	53	32	41
CTTCACTACCTATACG	alt_4574_reverse	52	45	52	36	45	34	48	29	66	35
AACTTTGGCGTTTTCA	alt_4574_reverse	10	10	12	12	17	14	20	16	23	14
TGTTGGGAAACCCCGA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GCACCACTTATCTCGC	alt_4574_reverse	47	55	53	44	51	41	60	43	66	42
CAGGCGTCATTTGGGA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTCCTCATTAAT	alt_4574_reverse	37	34	41	27	26	18	27	26	17	27
TAATTCCGTGGAACTG	alt_4574_reverse	49	45	74	74	59	74	46	72	61	57
TCCCACGCATCTCATT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAGCCTAGTTTAG	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
ACCCAGATCTTAGTTT	alt_4574_reverse	14	16	15	15	8	16	13	11	14	10
CCAACTTGTCATGATC	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATGCGTTTATTTACTG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGCCTTCCGGTAT	alt_4574_reverse	1	0	1	0	0	1	0	0	1	2
GAGCGACATGGACCAA	alt_4574_reverse	2	0	1	2	1	0	0	1	3	0
ACTATTACGTAACCTG	alt_4574_reverse	67	72	75	71	79	65	49	62	75	65
TAACGCCCGAAGTCAT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCCTTATCTTTGT	alt_4574_reverse	13	14	16	18	13	18	12	11	10	13
CTTTCCTGTGCTTACT	alt_4574_reverse	15	17	23	25	14	19	16	16	18	8
CTCACCCTCCCCAAAA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GATGCCAGTTTTTAAC	alt_4574_reverse	64	79	69	49	60	39	74	54	78	48
TGCGAACCTTTAGTCC	alt_4574_reverse	16	12	16	24	23	13	16	19	14	22
CGGTCATGGAGGGTCA	alt_4574_reverse	58	59	83	94	68	57	73	62	75	64
TGGGCTGTGTGACTCC	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTTCGTATTTGTG	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
CACTCTAGGGGCATAT	alt_4574_reverse	13	21	8	9	15	4	11	9	11	11
TAGCCGGTTCTACTAA	alt_4574_reverse	13	10	7	9	18	9	13	9	16	10
GTAACATCTTCTGTAC	alt_4574_reverse	4	3	8	5	8	6	6	2	10	3
TCCGAGTTGCGTATAC	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACGGGTTTCAAA	alt_4574_reverse	39	94	32	60	85	51	97	55	92	42
ACCGCTCTGATCTGAC	alt_4574_reverse	55	54	74	72	95	56	62	75	79	62
GCTTGTAATCTCCGTC	alt_4574_reverse	21	21	23	24	9	21	22	21	12	14
TCCGGCTTTTTATGGC	alt_4574_reverse	98	80	84	102	91	83	79	85	90	74
TATTACTCCGGCATCC	alt_4574_reverse	13	8	8	16	6	4	6	9	8	4
CAGTATTTTACAGCGG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCGTTTTACCCCG	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TTACCTTGGTCCCTCT	alt_4574_reverse	91	76	110	63	102	91	103	69	81	72
GCGGTCATCTTGGTTG	alt_4574_reverse	16	30	25	27	22	27	23	28	34	24
GCGGGATAATCTTCAG	alt_4574_reverse	90	87	102	93	89	71	93	67	79	58
AACGTTTATCCGTAAT	alt_4574_reverse	8	5	10	7	8	11	10	10	7	11
TACCTATCTGCGATAC	alt_4574_reverse	19	22	22	22	22	25	33	13	25	20
CAACAGGACTCACGCT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
CTATTCTGTGTACTGC	alt_4574_reverse	0	1	1	1	3	2	2	0	1	1
GAGGCGTTGAGGTTTC	alt_4574_reverse	22	27	29	24	27	25	23	25	23	24
ACAGTCGTGGTGCCCT	alt_4574_reverse	8	14	11	7	23	9	12	8	14	12
GTTAAGCGAGCCATGT	alt_4574_reverse	9	16	9	7	7	12	11	5	15	12
TTCTTAGTATTTTGAT	alt_4574_reverse	13	6	6	12	8	2	6	9	2	5
AGCATGCGAAACTCGT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCGTAATCTTCGT	alt_4574_reverse	72	43	52	65	42	53	35	49	46	50
TATTGCATCAAAGCCG	alt_4574_reverse	17	18	15	24	12	12	8	14	19	22
TCTGTGATATCTCCTA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTCACTTGCCACG	alt_4574_reverse	31	28	31	28	34	20	29	25	27	21
CCAAGCCGATTCCGGT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCCTAGTAAAGGG	alt_4574_reverse	4	3	7	5	3	3	6	2	1	4
AGCGGCCAATGTGTAA	alt_4574_reverse	14	16	7	18	19	17	7	8	14	15
TCGCTCTATCCCCACA	alt_4574_reverse	21	19	32	30	19	24	18	18	26	23
CTCTTAGCTTAGGTAT	alt_4574_reverse	8	10	16	13	11	17	10	14	14	18
ATGGTACGGGCAGTTG	alt_4574_reverse	13	13	13	14	7	14	10	11	10	13
TGGCGTTTCGTTTCTT	ref_4574_reverse	121	80	128	125	85	112	61	131	87	102
TGCGTTAGACTTTTCC	alt_4574_reverse	137	165	180	169	140	128	157	141	171	142
TATAGTTATTCCGTCT	alt_4574_reverse	23	43	54	30	32	36	29	27	42	28
TGGTCAATGAACGTAA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
CTTACTTTACGTTTGC	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GGCATAGAATCCTGGG	alt_4574_reverse	12	18	17	11	11	11	22	16	5	18
TGTTATCATTTGCTAT	alt_4574_reverse	87	101	138	147	112	113	98	96	107	115
ATTGTCTTAGACTTAT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
CGACCTTAGTAGCACG	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TAATAAGTACATGGTT	alt_4574_reverse	27	31	46	50	35	45	45	34	41	27
TTGGATTATACCTTAG	alt_4574_reverse	41	66	66	57	52	52	56	54	57	36
GTGTTTCTGGAACTCA	ref_4574_reverse	27	27	31	24	20	34	28	21	22	25
TATGTGTCCCCGATCA	alt_4574_reverse	14	15	17	24	10	10	23	13	20	15
GTGATCTCGGCATTTA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GGCGGAATTCATTCAA	alt_4574_reverse	41	34	34	44	48	51	52	45	33	40
CAAAGCGACAATCAGT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
AAAATATATGCCTCAT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATTTACTAACACTTTT	alt_4574_reverse	36	42	52	63	48	45	49	49	51	45
GCAACATGAACCGTGT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTCTTAGACTTAT	alt_4574_reverse	55	74	67	46	69	64	75	62	78	52
CCCCGTTATAATCTGT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TAGCAGTGTTTCGTAG	alt_4574_reverse	31	39	37	30	29	34	52	25	31	21
GAGCGTGTTCGAGCCA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCGCAGTGGGGACATA	alt_4574_reverse	3	4	2	3	1	1	5	0	1	5
GATTGGCAGGATTTCG	ref_4574_reverse	33	36	45	16	21	38	29	35	36	19
CCTTTACCTTGGGGAT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCTAATCTTAACC	ref_4574_reverse	30	23	38	33	19	26	21	23	27	31
GATCATCTTCCGCGGG	alt_4574_reverse	33	39	35	46	36	33	29	35	48	34
TCAGCTCTTGACTCAA	alt_4574_reverse	31	39	51	48	50	46	45	44	38	34
CCGCCACAACAGGGTG	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GGGATCCCGGCTCGTA	alt_4574_reverse	12	11	24	19	9	13	20	14	3	9
AGGGCGAGTTCACCAC	alt_4574_reverse	27	27	27	26	24	23	29	38	22	29
TTTTGAGCGATTTCCT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTAGAAGCCTCCT	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCAATTTCGGAATGTG	alt_4574_reverse	16	19	20	15	18	21	18	12	21	10
TCGCGGTGTTGCTGTT	alt_4574_reverse	98	91	98	104	114	103	108	117	118	85
GCCTTACTTCGAGTGC	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGGTTGGGGTTCT	alt_4574_reverse	9	9	12	14	10	4	8	8	11	5
TGTTTACGCTAGCATT	alt_4574_reverse	12	11	22	15	15	12	11	17	22	17
GGGTATAAGACGGATA	alt_4574_reverse	54	44	52	34	28	30	43	34	55	34
TAACGCGATTTCATCC	alt_4574_reverse	281	153	300	286	190	253	202	243	228	224
ATGTTTCACCAGTACA	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATGTAACGTCATGTTG	alt_4574_reverse	33	42	35	31	23	51	30	33	36	38
TGGGGTTATCCTCATC	alt_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCTAAATTTCTGACCC	alt_4574_reverse	47	33	55	42	39	40	40	48	55	41
ACACTTTAACTTTTAT	ref_471_missing	3	10	6	7	8	3	13	3	6	3
CCAGATTAGACCTCTG	ref_471_missing	1	4	1	0	0	1	0	1	3	0
AACGCGAGTATCCCTT	ref_471_missing	0	0	0	0	0	0	0	0	0	0
CTGCCGTAAATATTTG	ref_471_missing	6	19	7	7	11	6	23	9	14	7
GCGTTGCGCCCGCATG	ref_471_missing	0	0	0	0	0	0	0	0	0	0
GCCTTGCGGTCTTTGT	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TCAATGAGGTAGGTTG	ref_471_missing	0	0	0	0	0	0	0	0	0	0
GCATTCGCTCAATTAC	ref_471_missing	4	19	12	8	33	9	21	4	20	11
AGGTCTGTGTCTAGAA	ref_471_missing	0	0	0	0	0	0	0	0	0	0
AGGTTAGAAATAACCA	ref_471_missing	29	56	33	29	40	25	56	20	66	27
GGAGAAAAAGCTAGAA	ref_471_missing	0	0	0	0	0	0	0	0	0	0
CGGATTCTAAGTCGGG	ref_471_missing	14	40	29	27	42	18	46	23	67	23
CAACTTGAGTTCGTGC	ref_471_missing	1	10	5	2	2	3	3	1	4	4
TGGCAGGTAGGGTTAG	ref_471_missing	11	32	11	12	36	16	32	13	49	21
GGTTACTGTACTGAAA	ref_471_missing	4	19	10	6	27	3	25	3	14	7
TTGCGAGCACATAAGT	ref_471_missing	33	98	42	25	98	35	96	48	128	31
CCCGTACCTGTATACG	ref_471_missing	7	20	5	8	16	6	19	4	15	7
GCATGATTTTCTTAGG	ref_471_missing	45	87	56	37	93	22	100	37	123	39
TTAGCCCGCATATATC	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTACGTGTGCAC	ref_471_missing	0	0	0	0	0	0	0	0	0	0
ACGCTTTGACACCTGA	ref_471_missing	4	6	4	0	4	1	6	2	5	3
ATAAGCGTGCTGGTAA	ref_471_missing	10	32	19	15	37	22	50	11	54	16
GTCTAGTTCGAGTATA	ref_471_missing	9	22	10	7	16	7	17	6	20	7
TTTCGATGAGACTCGC	ref_471_missing	8	20	7	10	14	8	22	9	23	6
CCGTTTCTTTACGCGG	ref_471_missing	0	0	0	0	0	0	0	0	0	0
ACCTTGTCTGGCCTTG	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TAAGTATTTCTGTCTG	ref_471_missing	4	11	7	9	5	10	7	9	13	1
CCCACACTGCACTCCA	ref_471_missing	0	0	0	0	0	0	0	0	0	0
AATTTATTCCCTTTCA	ref_471_missing	23	38	16	19	36	22	46	20	50	18
GAGATGTGAATCCGTA	ref_471_missing	11	30	15	13	29	19	35	13	27	14
TGCCACCCGTTGCCCA	ref_471_missing	29	79	38	36	66	29	64	29	49	22
TGGCATACTACAACTG	ref_471_missing	10	39	17	7	24	15	24	7	29	9
GGGTGTTTATTTAGTC	ref_471_missing	20	46	23	8	36	16	57	17	23	8
CCAACGGCCTACTTTT	ref_471_missing	1	10	5	1	4	1	5	0	8	2
GGGCTTCTAGTTAAAC	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TTAGAGTCATAATTAC	ref_471_missing	0	0	0	0	0	0	0	0	0	0
CTGAGCAGTGTAAGAC	ref_471_missing	13	48	29	24	40	7	62	17	67	21
ATTTCTTAACCGGGTC	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTCAATACCACG	ref_471_missing	8	8	10	9	22	5	20	5	19	6
GGTAAGACCAAGTTAT	ref_471_missing	3	0	5	3	8	1	7	1	6	0
GGTGGAGCCTCTCATC	ref_471_missing	3	3	1	1	6	0	3	2	0	3
GATTGCATTACCCCCG	ref_471_missing	4	14	6	2	13	4	18	3	13	4
GCCTGAGTTGTCACTT	ref_471_missing	11	38	21	7	39	10	48	14	30	17
TCATAACTTACATACT	ref_471_missing	5	17	4	11	19	9	21	5	21	4
AACTTGCAAACACTTC	ref_471_missing	22	55	30	30	39	17	39	21	46	22
CTGCTGGTACATTCAT	alt_471_missing	19	54	19	22	38	20	44	20	42	19
TTCATTTTGGTAGTCA	ref_471_missing	11	39	25	16	32	26	40	18	40	13
CCCGATTGTCTCGGGG	ref_471_missing	5	9	3	9	17	4	16	0	11	2
TACCTGGTCTAAATCA	ref_471_missing	3	16	3	1	12	6	17	1	11	1
GCCCACTCTTTGCTCG	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TGTTATCATACTAAGT	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTACTTTCGTAA	ref_471_missing	2	7	4	3	7	4	10	6	11	2
AATCTATTCTTAGCTA	ref_471_missing	4	6	6	3	5	4	5	4	12	4
GGGCATGGGTGAGGGC	ref_471_missing	6	17	5	8	13	7	6	11	15	2
TTTGATCATGCGCCCT	ref_471_missing	6	19	7	5	22	4	24	9	23	9
ACTACTAAACGTTTAC	ref_471_missing	8	18	7	8	27	8	12	7	18	7
GGGTCAATTAGGGGTG	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTATTGTTGATC	ref_471_missing	18	30	18	17	28	20	34	15	27	15
TGATCGAGCAAGTATT	ref_471_missing	19	35	13	16	34	15	46	8	32	17
GAGCGGTTCCGCTGCC	ref_471_missing	9	30	11	9	28	7	32	13	18	7
ACAATAAGGATGATTT	ref_471_missing	8	4	10	3	9	4	3	4	16	3
ATGCGGGGCCGCTAAA	ref_471_missing	23	78	34	39	101	38	97	32	95	31
ATGGTTTATTAATAGC	ref_471_missing	9	16	5	12	19	19	26	10	28	5
TCGTTTACCCTTTAGT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CGGATTATTTTTATCT	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTACAGAACCGG	ref_471_missing	0	0	0	0	0	0	0	0	0	0
CGGCGTTTATATGTGC	ref_471_missing	2	26	3	1	25	2	25	1	35	2
ATGCGTGCCAACTTTA	ref_471_missing	0	0	0	0	0	0	0	0	0	0
TTAGTGCGATTCACTT	ref_471_missing	8	35	14	8	20	13	32	10	31	14
CTCCCTGTTGGGCTCC	ref_471_missing	4	9	1	2	9	0	8	2	8	0
TGTTGGTGCTTCGCCT	ref_471_missing	15	24	24	10	27	14	23	6	31	8
GGCGTGGTGACTCACC	ref_471_missing	13	97	10	12	97	6	107	12	108	10
TTGCAAGAATCGCCTA	ref_471_missing	22	33	20	22	38	17	54	14	55	14
ACTATTACGACCGTTG	ref_471_missing	15	28	13	20	24	17	46	15	43	15
GCCTCAAGGCCGAATT	ref_471_missing	4	20	10	5	12	9	20	6	11	10
TAAATAGGCTTGTGAT	ref_471_missing	15	24	13	16	12	13	28	13	31	8
CGCTAACGCCCATGCC	ref_471_missing	0	0	0	0	0	0	0	0	0	0
GAGGGTTAGCCCTACC	ref_471_missing	5	13	11	9	6	8	14	7	16	10
GGCCCAAGTCAATCGT	ref_471_missing	0	0	0	0	0	0	0	0	0	0
CATTACTGCTTCCATT	ref_471_missing	0	0	0	0	0	0	0	0	0	0
GATATTGATGGTCCGC	ref_471_missing	0	0	0	0	0	0	0	0	0	0
CCTGACAAAGTGTAGA	ref_471_missing	0	0	0	0	0	0	0	0	0	0
CTTGCAATGGTAGCTC	ref_471_missing	6	13	7	4	11	4	17	3	9	7
TGTTGTTTTTAACGGT	alt_3594_upstream	38	44	45	39	54	38	58	34	51	22
TTCCTCATCAAGCACT	alt_3594_upstream	48	55	62	45	69	54	58	45	71	45
TGCCTCCCCTTGCTAT	alt_3594_upstream	15	33	22	16	27	12	33	11	33	13
TCCTCTTATCGTTTTC	alt_3594_upstream	30	31	37	35	28	49	33	31	22	27
TAATGAAGCCCTCGCT	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
GTCTACTCAGCAGTCC	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGTAGTGATGTGA	alt_3594_upstream	42	30	59	33	42	26	45	39	33	25
GCACGTGGTTATCTTG	alt_3594_upstream	265	350	358	282	388	283	390	260	399	246
AGTAGCTACTACCCAG	alt_3594_upstream	41	64	41	23	60	28	45	28	54	36
CCTGACTTAAGTGTAC	alt_3594_upstream	15	39	21	14	36	12	41	12	45	7
TTCTGATCCCGGTATA	alt_3594_upstream	14	13	14	20	32	10	17	14	20	18
ATCCACGTCTGAGCGT	alt_3594_upstream	11	15	6	9	12	10	8	6	10	7
GAATCCGCACCCCAGT	alt_3594_upstream	78	70	90	72	82	63	88	72	86	69
TGCATTACGGCACCTT	alt_3594_upstream	81	106	96	84	98	81	104	71	151	86
TACTAAATACCGATCA	alt_3594_upstream	1	5	9	4	7	2	2	2	4	1
TTTAAATGTTCCGTAT	alt_3594_upstream	16	9	24	11	28	24	11	19	13	12
GTCCAGCATCCCGTTG	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
GATATCGGTGTCGTCA	alt_3594_upstream	14	9	12	14	12	13	17	12	15	4
TTTTTTCTCGCTTTCC	alt_3594_upstream	35	32	34	39	32	35	26	35	43	34
CTTCTTCAGACGAGAA	alt_3594_upstream	103	121	110	101	111	81	84	75	95	89
CTTCGGTTGTCTCATG	alt_3594_upstream	92	183	141	109	131	102	147	87	183	73
CCAGTCAGTGTGGGTT	alt_3594_upstream	114	127	95	94	99	99	130	87	145	73
ATCGCCTTCAGCTCCG	alt_3594_upstream	35	28	41	28	33	31	42	25	41	30
GAACTCCCCCATCCCG	alt_3594_upstream	12	12	20	12	17	9	17	10	10	5
ACCGTGCCACTGGCCA	alt_3594_upstream	2	8	5	1	10	2	10	2	7	1
TTCATGTTTAATCAGC	alt_3594_upstream	58	73	67	47	99	54	115	48	92	37
CTGGGTTCTGTGCCCT	alt_3594_upstream	68	103	88	82	95	68	98	60	112	62
GCTCATTGATGGTGAT	alt_3594_upstream	8	20	21	11	23	16	19	9	32	12
CTTAATTGCGTCGCCC	alt_3594_upstream	0	1	2	4	3	4	6	4	3	4
GGTGTGCTCTGACCAT	alt_3594_upstream	50	63	72	73	65	55	67	51	81	42
CCAACTGTTACCTTCG	alt_3594_upstream	71	367	107	97	410	84	424	93	412	87
TAATCCATTTGGTCAT	alt_3594_upstream	4	7	2	3	3	6	2	1	4	1
CGCGGAAAGATCCGGT	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
CGCACGACTTTGTTGT	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
CAGAATCCCGAAGGAT	alt_3594_upstream	86	109	99	81	106	70	111	66	108	53
ACCAAACTGGGGCCCG	alt_3594_upstream	6	10	9	6	7	7	9	10	15	13
GCCGGTTCCGATATTC	alt_3594_upstream	74	115	109	93	89	86	116	103	113	79
ACGGTTATTTAACGCG	alt_3594_upstream	34	38	26	47	44	38	49	28	71	25
TACAGACATTAATTCC	alt_3594_upstream	22	26	29	18	18	17	32	12	22	19
TGCTTCGAGGATGCTA	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
TTTATCGTGAGTTTTG	alt_3594_upstream	125	153	127	117	187	118	173	95	212	106
AACTATCGGCTCCTTG	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
GATCCCTGCCTGAAAG	alt_3594_upstream	29	27	42	26	30	22	46	29	39	25
GTCAAGTGCAGAGTCT	alt_3594_upstream	78	80	76	66	86	63	112	56	96	59
TCCTATTGGAGTGTCG	alt_3594_upstream	27	28	37	27	35	22	39	26	33	24
TCTTCTTGAAGGCATC	alt_3594_upstream	22	39	55	38	34	34	40	34	61	21
CCCACGTTAGAAGGCA	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
CCACATCATCGAGCTT	alt_3594_upstream	25	24	27	21	25	26	26	18	24	21
GTGACATGTCGAAATA	alt_3594_upstream	8	19	27	24	12	14	23	21	23	21
CAACCTTCTGCTCTTA	alt_3594_upstream	15	32	18	17	32	8	33	10	35	20
GACTCATAGCCACACA	alt_3594_upstream	59	74	70	62	91	50	95	44	91	66
GTCGTTTTGTAATAAA	alt_3594_upstream	19	20	28	25	23	23	23	30	22	8
CTCAATTGAGAGCCAA	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
AAGAATATGTCTAGCT	alt_3594_upstream	57	61	61	43	54	41	53	47	58	43
TTGTTCTACTGCTGCA	alt_3594_upstream	11	10	9	7	11	9	17	4	13	10
CTTCAATAACTATACT	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCTTTATTCGGGC	alt_3594_upstream	81	80	84	91	85	60	89	73	95	65
TAGGCTGCGGCTTTTC	alt_3594_upstream	7	7	7	9	12	11	18	11	13	7
TTATCTACGTTCATTT	alt_3594_upstream	15	10	14	8	17	13	28	13	17	9
ACTTTCCCTGCTCGAA	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCTCGCGTTGACG	alt_3594_upstream	30	44	39	21	41	27	34	19	40	29
AGTTACACTTTCTGCG	alt_3594_upstream	64	101	77	65	93	57	90	61	105	66
GCGTGCTCTCCCGGGT	alt_3594_upstream	5	3	4	1	6	0	4	4	8	5
TTTATAGAGGAACCGA	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTTTGCTTGCACT	alt_3594_upstream	20	23	18	10	26	15	27	15	34	22
TCTGTATGGCTTTTTA	alt_3594_upstream	31	35	39	39	48	36	37	34	43	30
AGCACCCCGGTTCACT	alt_3594_upstream	21	27	39	24	44	23	35	21	31	23
AGGTGGTGAGCTATAA	alt_3594_upstream	39	69	57	39	33	39	36	39	53	51
AAACCAGCGTGCATAT	alt_3594_upstream	35	32	34	28	32	32	49	36	50	27
GCCACCGGGATCCTAG	alt_3594_upstream	27	15	24	24	28	24	26	19	22	25
TTTATGGTGGAGTCTG	alt_3594_upstream	5	12	14	5	10	4	10	4	11	10
TATATAAGCCTTTCTG	alt_3594_upstream	11	14	22	14	16	15	10	14	31	13
TCTAAGACACTTTGAA	alt_3594_upstream	341	414	364	346	443	299	477	283	446	283
ACGCACGGGGTTTGTC	alt_3594_upstream	68	70	104	66	94	61	82	66	88	57
AGTGGCGGTACGTGAG	alt_3594_upstream	122	206	132	139	227	133	204	107	204	125
CCGGCACCGGAACGGC	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTCCTTCCCCTG	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
GGAAAGCTCATGATAT	alt_3594_upstream	7	12	9	10	8	14	14	4	11	6
TGCCCCGCAATCTACG	alt_3594_upstream	111	135	130	130	137	112	120	83	158	119
CGGGTATCGGGTTTCG	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCACTCCGAGCTG	alt_3594_upstream	21	14	11	22	19	13	19	11	16	13
GGTCTGGGTGAGGGCC	alt_3594_upstream	11	9	15	10	10	5	18	6	11	9
GATCCGCGTAAGGAAC	alt_3594_upstream	32	52	29	38	62	37	56	32	69	39
ATTTCGAACTAGACCC	alt_3594_upstream	16	20	20	21	25	17	18	15	21	19
CGCAGGTTCGCACCAT	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCCTAGTGCCCAT	alt_3594_upstream	12	22	9	8	26	16	23	7	43	9
GGATGTAACATCAACG	alt_3594_upstream	14	16	17	11	18	10	12	13	15	12
TTTTGCCTGTGGCAGA	alt_3594_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTATTGGATAATC	ref_2537_reverse	158	122	171	151	127	145	134	149	136	148
CAGGGAATTTACACAG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GAAATCACAAGATTCA	ref_2537_reverse	27	21	29	18	22	20	24	22	17	20
TGATCATTAACGAATA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CACTAGGCATGTGCCT	ref_2537_reverse	26	15	29	17	17	16	21	20	30	25
TATCTTATGCCGGCTC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTATCTAAAGTTGAGC	ref_2537_reverse	9	9	20	15	18	14	18	13	30	15
CTCGCCTTAAGGTCCT	ref_2537_reverse	87	68	101	88	70	98	85	87	58	90
TAGTTGACTTTTATCC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGTGCCCTAGTCC	ref_2537_reverse	115	122	139	110	115	92	138	100	138	110
TTGCCTCTTACCTTGG	ref_2537_reverse	1	5	0	0	12	1	9	2	16	0
GCCGCGCGTTAGGTCT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
ATCCATTGCCGTATGC	ref_2537_reverse	3	6	3	2	6	2	9	3	4	1
TCCAAGGTTAGATCTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTCTTGATTTTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCACACGTGTTTA	ref_2537_reverse	8	10	7	10	16	11	7	6	13	5
TTCCCTGGTTGGCTAT	ref_2537_reverse	67	48	60	58	59	40	54	49	39	40
ATAGGTCCGACGTCTC	ref_2537_reverse	26	15	35	26	14	26	20	28	17	24
GCGCTTCCGTCTCACT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCTATATGCGGGA	ref_2537_reverse	21	17	20	17	16	19	16	11	13	19
GCCGGGTTTATGAGGT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTCTCTGTGTCGA	ref_2537_reverse	37	35	59	47	33	52	36	53	42	41
CCCCGAGAACTGTGAT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TGGATCCCCAACTTAC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTGGAGTGTGTTTTCC	ref_2537_reverse	5	5	2	9	5	8	5	4	3	6
TGTCACTACGCCTGCT	ref_2537_reverse	32	30	33	40	33	21	26	18	20	21
TGGGTGCAGCGTCACG	ref_2537_reverse	42	28	49	50	35	38	24	39	37	42
TTCTACGACTCCTTCT	ref_2537_reverse	15	13	11	8	16	8	16	8	15	7
CGTCTTGTTGCTAGTC	ref_2537_reverse	5	18	7	9	18	11	19	4	14	4
GGGTAGGGATGACATG	ref_2537_reverse	34	21	30	25	28	20	29	13	22	23
CGAGATTCAAGGATCG	ref_2537_reverse	42	30	42	40	38	29	35	37	26	32
GGAAGTTCCCATCTCG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCCTCATCAATAT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGGTGGAGTGTTT	ref_2537_reverse	1	1	0	1	4	0	2	1	1	2
TTTGATCATACACATC	ref_2537_reverse	17	14	11	20	11	18	17	16	16	15
TTCGCTACGGCGCGAT	ref_2537_reverse	1	4	3	1	3	2	1	4	4	0
GGCATTCTTTTTTTTC	ref_2537_reverse	18	6	22	11	8	8	8	11	10	6
AACCCTTAAGGAACGC	ref_2537_reverse	16	9	28	12	15	13	16	20	18	11
AGCAAACTCTAGCATT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TACTAACACTTGATTT	ref_2537_reverse	0	2	2	3	0	0	0	2	0	0
GGACCAGTGTTTGTGG	ref_2537_reverse	28	34	28	32	39	23	37	27	34	20
ATATCAATGTATCTGG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTACGCACCGTG	ref_2537_reverse	35	39	54	46	40	25	39	29	41	32
GTTAATGTATGGCTGT	ref_2537_reverse	23	18	24	18	23	25	12	14	19	20
GATAAATCTTTCCTTG	ref_2537_reverse	14	5	26	15	8	9	9	11	3	12
CCGGCTTCATTTCATA	ref_2537_reverse	21	28	18	30	32	21	25	21	26	27
TGCATTCTGCGTGCTT	ref_2537_reverse	17	6	9	13	14	10	18	6	12	12
GATCGTTTCTACATAG	ref_2537_reverse	30	49	65	29	39	44	38	29	34	33
TAATGGGACGATATTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTACCCCGCATGG	ref_2537_reverse	12	13	18	10	25	17	20	10	11	16
GCATAGCTTTTGTTAT	ref_2537_reverse	42	43	59	59	60	35	55	33	49	48
TTGTTCCTCACAGGCC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
ATTAATTAGTGTGGGG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGACGTTCTTGAT	ref_2537_reverse	50	44	50	52	43	32	40	35	67	44
GGAATATAGGTCCGAT	ref_2537_reverse	143	101	120	123	131	127	120	90	99	110
CCTGATGGGTGGCGAT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGGCGGCACTTGC	ref_2537_reverse	63	59	79	55	63	63	55	57	61	61
TGGCTGGAGGTAATGG	ref_2537_reverse	17	10	20	15	12	12	19	12	8	8
CACTACACGCATGCGA	ref_2537_reverse	71	81	78	49	67	55	87	58	63	71
CCCATCTATCATTCGC	ref_2537_reverse	15	26	29	13	40	17	26	9	40	19
GATACTACGATGGACA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTTAGATCGGTG	ref_2537_reverse	17	15	16	13	18	16	17	10	11	12
TCCTGTTTGGATAAGA	ref_2537_reverse	9	10	20	16	7	11	9	7	5	16
TGGCCCTTAGGAGCCG	ref_2537_reverse	24	10	21	23	7	15	17	17	17	18
CAGGCCGATGTAAACG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGCCAAGCGGGAG	ref_2537_reverse	31	20	42	37	26	26	27	33	25	24
TTTTAGCCCATAGAGA	ref_2537_reverse	59	45	65	56	56	67	51	52	62	50
TTATGCATCGACCCGG	ref_2537_reverse	37	48	48	52	41	50	47	48	35	50
GAGGCTTCACTTTATC	ref_2537_reverse	33	17	24	21	14	18	15	15	17	19
CTGGGAATCTGCTACC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGATTCGGTAATC	ref_2537_reverse	40	47	71	47	60	52	63	63	47	58
GAGCTCCTTCGATCCG	ref_2537_reverse	3	1	4	3	4	3	4	2	3	6
CGTCCAGTATTACTGC	ref_2537_reverse	107	109	128	111	131	107	116	86	170	90
ATTCTCTGGCGGGTTC	ref_2537_reverse	0	2	1	0	1	1	0	0	1	0
CGGCTCTCTGCTGAGG	ref_2537_reverse	27	31	40	24	36	19	38	33	54	21
CTTGAGAATCTTCGGT	ref_2537_reverse	68	45	96	85	69	82	75	54	66	63
TTTCGGGCGGAATTCG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGGGCTCAGATTA	ref_2537_reverse	27	37	49	26	25	29	39	32	28	22
TCTACCTATAGGTGAC	ref_2537_reverse	16	20	22	16	18	20	18	25	16	19
AATCCGTGGTCACCGA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TATCATGAGATATAGT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCATTGTAAATCT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TACGCTACGCTGTCAC	ref_2537_reverse	10	7	11	7	7	9	17	12	10	8
AGCTTGCCAATTTATT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TACGGAATGGTTAATG	ref_2537_reverse	31	28	69	40	32	42	52	38	43	36
TAACCTCTGACTTCAT	ref_2537_reverse	74	46	65	72	45	62	65	40	46	58
GAAGGTCCTCTCGTAT	ref_2537_reverse	18	12	32	27	12	18	25	15	23	33
AACCTGGGGTAGGATA	ref_2537_reverse	248	188	309	238	221	231	214	218	206	216
ATTAATGGGTCCACTA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGGCTTCCTTTAT	ref_2537_reverse	6	11	9	10	17	12	12	13	10	10
ACCATCCGACCTTGCA	ref_2537_reverse	9	22	17	14	23	9	19	12	30	13
ACGGTACAATTTGGAG	ref_2537_reverse	3	9	9	6	1	8	5	6	7	5
TTGTGGCTGTTGGGAG	ref_2537_reverse	105	94	125	100	85	79	93	84	114	77
CCTTGTGGTATGTGTG	ref_2537_reverse	19	31	16	28	34	13	37	12	23	17
CTGCTAACGCTCTGGT	ref_2537_reverse	59	67	94	69	67	74	77	84	72	69
CGCGTTTAAATCCCTC	ref_2537_reverse	33	59	41	43	46	38	48	40	70	37
GCCGCGCGGGACGTTC	ref_2537_reverse	16	13	17	20	17	22	13	13	24	17
ACAGCCCCTCCAAACA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGCATTCATTGAT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTTTAGTATCTCC	ref_2537_reverse	54	20	52	31	41	29	42	33	38	28
TCGGAGCTCGGACCCA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGGTTGCGTGTTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGGGTAATCAGCT	ref_2537_reverse	77	67	79	69	67	82	55	86	82	76
ACTGGTTGGTGCGGTC	ref_2537_reverse	14	5	10	11	14	11	10	7	15	11
GCTACGCTGAAGCGCC	ref_2537_reverse	19	21	30	27	19	22	10	25	11	21
ATACAAGCTTGAATTA	ref_2537_reverse	84	70	91	86	62	89	60	78	75	68
CCCGTTGAATCCTCTA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTCAGAATGAGTG	ref_2537_reverse	1	5	6	1	6	0	6	2	1	3
GTGCAATTCCTTCCTA	ref_2537_reverse	168	150	194	141	157	155	169	153	169	148
CTGGATTATCGTCGAA	ref_2537_reverse	98	75	102	90	93	91	95	79	119	106
CTTCTTTTTGTTTACC	ref_2537_reverse	143	118	164	170	183	123	176	138	151	114
TCTCTCCAAGCTCGCG	ref_2537_reverse	20	27	18	27	20	25	24	27	29	21
TGCCTGATTGCGAGCA	ref_2537_reverse	5	2	4	8	6	5	10	5	6	5
AACGTGATTGCGCCGC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
AATTTCGATTCAGCTC	ref_2537_reverse	307	223	341	263	201	264	257	264	221	238
GTTAACTAGCCTTGAC	ref_2537_reverse	33	48	46	23	26	34	37	36	43	30
ATTGTTTGGTTTGGCA	ref_2537_reverse	28	25	34	28	33	20	30	19	24	24
ACGGCTTTCCGCGTTT	ref_2537_reverse	46	49	63	58	40	66	60	46	54	36
TTGTTTGCTACAGCCG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTGTCTTCCTTCG	ref_2537_reverse	39	34	59	36	17	42	31	36	33	37
CCCCTCCTGGCCTGAT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTCTAACAAGTTA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTTCGCTTCGCTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCAACACGATTGTTTC	ref_2537_reverse	11	8	19	14	9	16	12	11	10	15
GGTGCACTTCTTGACA	ref_2537_reverse	50	62	46	38	56	38	48	42	52	55
GGGGATGCAGACTCAT	ref_2537_reverse	20	7	15	23	17	14	18	17	18	10
TTTAATGACGGTCACG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTTTAACTTTGCA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCTAGTGGTCTGG	ref_2537_reverse	19	21	26	24	25	22	34	28	28	19
TAGCCTGTAGGAATAT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
AGAACCCGGGATGTTC	ref_2537_reverse	52	27	43	42	30	31	29	44	23	29
TCTGACAATGATGCAA	ref_2537_reverse	27	20	20	31	23	29	23	14	11	11
ACCACTCTCGCGACTG	ref_2537_reverse	142	172	145	134	172	145	159	119	178	100
GAGTCGCGCCCTCGTG	ref_2537_reverse	70	63	92	68	75	63	58	65	79	57
TTAGAGGTTCTGGGTG	ref_2537_reverse	43	38	48	47	63	31	33	38	45	20
AGTCCTGGCCTATCCC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
ATGTACGGCCCGCAAA	ref_2537_reverse	15	14	13	15	11	15	18	14	17	18
ACGAACCCCTATAGTA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCTTCGTAAAGGG	ref_2537_reverse	9	6	15	7	7	12	5	11	6	6
TAATTAGCCTGCGTCT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGTGCGATGTAGG	ref_2537_reverse	15	15	19	15	14	16	13	16	15	15
CCGTCGGTCCACAAAT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CAAGATCGTCGCCCGC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GGGACCCGAATTAGAG	ref_2537_reverse	170	152	244	201	162	194	143	193	165	163
TAGTCATATACCCGGC	ref_2537_reverse	15	21	23	22	17	17	21	23	15	27
TCTGTCTTTAAGGAAA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAGACTGTGGTCC	ref_2537_reverse	12	12	14	12	13	11	27	11	23	14
CTGCGGATTGTCTTTC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCATCAACAACAACTT	ref_2537_reverse	24	27	46	41	36	49	34	26	35	35
ATGTAGCTGCATTCTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GAAATGTACATAGTCC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
AGTTAGATTCCCGGTG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CTATATGAGGGTGTGT	ref_2537_reverse	61	97	99	72	100	74	77	74	95	61
CTTACACAATTTGTTC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TCACCATCTGCAGGAC	ref_2537_reverse	24	92	25	27	98	20	118	24	91	22
ATGCGAAGATTGGTGG	ref_2537_reverse	61	53	56	41	45	51	60	46	46	47
GGCGAATTTGGACTTG	ref_2537_reverse	12	5	14	9	8	13	17	21	7	8
GTACGATTTTTCTTGG	ref_2537_reverse	52	43	74	48	58	66	53	53	60	48
ACGTAAGCATCGTTAT	ref_2537_reverse	7	2	10	13	4	4	7	7	7	5
TCGCACTTGACTACTC	ref_2537_reverse	311	288	331	283	282	257	271	262	269	303
AGCCGGTTTCGAAGCG	ref_2537_reverse	21	17	23	16	8	11	12	21	17	11
GTTACGCTGGCAATCC	ref_2537_reverse	9	9	13	7	6	10	5	8	7	7
TATTCTTACTTGTCTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GGGCGAGCTAATGTGT	ref_2537_reverse	1	0	4	0	0	0	0	0	1	0
ATCCTTCGTCACGTTT	ref_2537_reverse	25	32	38	29	33	25	34	18	31	26
TTACGGATACAGCCAA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTATGGGGATAGA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTCCGCTGTCAG	ref_2537_reverse	60	59	83	72	71	60	50	52	62	65
TCCATTCATAAAGCAG	ref_2537_reverse	39	27	54	34	34	38	37	47	43	27
CGATTCTTCATACCAA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTCTATACGCTTGAAA	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GATTTCGCGGACATGG	ref_2537_reverse	3	2	9	6	2	3	7	8	0	6
GAATCTGCAAGTGGGG	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTAAGTTTGATCG	ref_2537_reverse	15	27	22	20	22	18	32	21	22	30
GCTGTTCCGGCTTGCT	ref_2537_reverse	3	1	9	4	5	3	4	3	0	5
AACTACCCACGTGCTC	ref_2537_reverse	7	0	4	2	5	5	3	5	1	1
CATGTACGTGGGTACT	ref_2537_reverse	13	11	15	17	27	20	16	13	25	16
TGATCATTAACGAGTT	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
CGTACGAGGTAACTTT	ref_2537_reverse	17	16	28	19	20	19	15	22	21	30
GGATCATGTGCCCTAT	ref_2537_reverse	14	10	24	17	5	10	10	18	15	19
TTGTCCTCACATTATC	ref_2537_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTGATGCCCCCAG	ref_2537_reverse	1	1	2	1	5	0	5	0	1	2
ACTGTTTGCTCTTCAC	ref_2537_reverse	10	2	10	17	5	12	8	7	11	12
TTAGCTACGATGGTGT	ref_2537_reverse	1	5	1	4	2	3	11	2	3	4
AAAAAAGCCAGGTTCT	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TATGGTACACACAGTG	alt_5913_new	0	4	0	0	1	0	4	2	7	1
CCATCCGTCTCCGCCC	alt_5913_new	0	1	0	0	0	0	0	0	0	0
GAATACGGGATTACAG	alt_5913_new	52	82	79	36	73	49	81	55	78	50
CGGCATTCGGATAAGC	alt_5913_new	15	7	8	14	13	12	20	7	10	7
CCCGCCTAGGTTACCC	alt_5913_new	15	26	9	11	19	10	37	15	30	9
GGGTTTTGTGACAGTT	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TTGTAACTACCGCGAG	alt_5913_new	47	150	63	61	185	52	156	51	174	48
GCATTCTTAGTAAGTT	alt_5913_new	1	11	8	6	6	2	2	5	4	4
ATCTGGGGTTGGCAGC	alt_5913_new	10	16	16	18	12	12	16	5	10	8
AGGCATATCTCTTTGC	alt_5913_new	0	0	0	0	0	0	0	0	0	0
CATAAAGAAGCGACCC	alt_5913_new	0	0	0	0	0	0	0	0	0	0
ATTTACGTTTCGGTTA	alt_5913_new	18	29	21	20	18	15	32	19	30	15
ACACTATGTCCTAGGT	ref_5913_new	185	320	223	209	323	218	336	189	310	194
CACAGGTTCATTTCGC	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TCAGACTGGTGATGTA	ref_5913_new	8	23	15	17	23	15	19	8	26	11
ACCACGCGCGGTTATT	alt_5913_new	3	1	0	0	3	2	1	2	1	0
TGAAGTGGGTCTCTTT	ref_5913_new	115	168	132	114	191	100	175	108	190	108
TGTACACGTGTAGGCA	alt_5913_new	3	5	12	3	5	1	2	5	12	1
GCGTTTTCCTTACAAG	alt_5913_new	9	8	9	14	3	1	8	6	9	0
CATGTGGGGCATTAGA	alt_5913_new	5	2	5	3	2	1	4	3	8	2
TATCGCGTCTTTGATT	alt_5913_new	0	0	0	0	0	0	0	0	0	0
ACCCTTTTCGTTCTCT	alt_5913_new	16	33	13	16	19	15	23	15	27	19
GACATCTAACCAATTG	alt_5913_new	0	0	0	0	0	0	0	0	0	0
CCATCCGTCTCCGACC	alt_5913_new	85	175	106	78	164	81	156	81	173	98
CGTCGGTGGAGCTATT	alt_5913_new	0	23	3	8	35	4	22	2	31	2
ATACAAGTTCGTTCCT	alt_5913_new	51	93	71	63	84	47	109	50	101	58
GCTCTTGGGGTACACA	alt_5913_new	14	28	20	17	39	22	43	23	39	29
TGTATTTTTATGTTCG	alt_5913_new	0	0	0	0	0	0	0	0	0	0
CTCGGGTCCCAGTCAA	alt_5913_new	47	65	61	57	91	43	91	53	90	43
TTTGTAATTTATACAG	alt_5913_new	23	39	33	25	24	18	25	24	34	17
CCAACCGTCTCCGACC	alt_5913_new	0	0	0	0	0	0	1	0	0	0
GCTATGTGACCATCCC	alt_5913_new	13	22	12	10	27	14	21	12	26	14
TCAACTACATTTCGGG	alt_5913_new	1	3	1	2	2	0	0	3	4	0
TAAATCCATTGCCGCG	alt_5913_new	13	15	6	4	9	9	8	5	15	3
GGCCTTCATCGTCGGT	alt_5913_new	18	43	37	17	25	15	31	17	34	19
GCGCGTGTTTCAGTCT	alt_5913_new	52	102	57	47	92	63	86	53	124	41
AAGTATCGCTGCGCTC	alt_5913_new	27	44	27	31	35	30	56	20	50	17
CTCGAGGATTTTAAAG	alt_5913_new	20	36	30	24	26	25	51	30	45	18
GCTATCTAGCCGTGTG	alt_5913_new	73	146	97	63	171	70	162	60	170	82
CTGAGACCTTTTGCGC	alt_5913_new	24	37	32	32	39	26	40	17	38	27
GTTATGAGCAAGCGCA	alt_5913_new	12	14	11	5	13	10	22	4	18	9
GTTGTGCTCAACATGC	alt_5913_new	16	17	14	11	29	15	38	11	23	10
TTGATAAACTCAATGG	alt_5913_new	1	2	1	1	6	0	4	0	3	2
TTGTGCACCTGTTGGC	alt_5913_new	4	15	10	9	11	4	15	13	24	4
ACAGGCTACATTCCCT	alt_5913_new	7	19	14	7	16	6	27	7	12	6
AACTGCTTGTTCTTCC	alt_5913_new	37	80	53	37	50	33	60	46	49	40
TTTAGCGCGCCTACAA	alt_5913_new	9	15	13	10	20	13	18	13	25	12
CCGCGCAGTACTATGT	alt_5913_new	12	70	30	15	81	9	69	14	90	12
CGGACTAGGCAGGTAT	alt_5913_new	0	0	0	0	0	0	0	0	0	0
CCTTTGAGGGACGGGA	alt_5913_new	6	9	10	4	9	5	18	3	13	2
CGTACAACAGGGACTA	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TAAGCGTTGGTAGCTG	alt_5913_new	5	16	7	9	16	8	16	10	12	6
CAATTCACATCTTACC	alt_5913_new	32	94	29	39	84	31	98	35	114	29
TGGCAACTTTACGAGG	alt_5913_new	14	19	16	20	25	20	22	4	20	13
TAGTTACCGAATTTCC	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TGCACTGACACGACAA	alt_5913_new	15	16	16	9	8	17	20	11	14	8
GTGCAAACTTTGTGGG	alt_5913_new	1	1	1	0	4	0	2	2	3	0
TTGTATTTCGGCCAGC	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TATCCATAAGTTGATC	alt_5913_new	5	11	8	5	12	9	16	10	10	4
GATATAGCTAAGTAAA	ref_5913_new	39	38	45	46	48	33	37	46	61	29
AATGAGCTTAACTTAT	alt_5913_new	1	2	2	0	3	5	2	1	1	1
AGAACTTCTTGGGTAA	alt_5913_new	14	24	18	8	19	10	24	8	19	9
AAACGTTCCTTCTGAT	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TTAAGACCGCCGTCAA	alt_5913_new	7	13	7	4	11	10	14	12	18	10
TCACTCCCCTTTGCTT	alt_5913_new	0	0	0	0	0	0	0	0	0	0
GTATCTAGTGTGAAAT	alt_5913_new	6	4	7	2	9	3	12	5	12	8
CATACCAACTGGCATG	alt_5913_new	55	106	57	49	94	43	99	41	82	54
GCTCCACAGGTTTTGC	alt_5913_new	12	32	6	8	29	2	19	4	19	14
ACATTCAAGTTAGGTA	alt_5913_new	17	38	16	18	24	22	24	12	31	24
ACCCATCCCAAGTCTG	alt_5913_new	31	49	45	43	43	38	54	19	44	23
CTTAGGCCACTTACGT	alt_5913_new	15	39	15	27	41	16	25	13	31	13
CCAAAGGTGAGTTGCC	alt_5913_new	0	0	0	0	0	0	0	0	0	0
CTATACAATCAAACTG	alt_5913_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTTTCAACCGG	ref_5365_fdr	129	73	159	150	90	133	82	139	81	131
TCGTGCTATATTGTCA	ref_5365_fdr	56	27	80	57	26	62	40	59	35	46
TTCGGCGTCTGCTAAG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CAGTACCATAATAATA	ref_5365_fdr	15	2	22	19	6	15	7	13	7	13
GAGTCTCTGGCAACCA	ref_5365_fdr	79	57	130	113	64	88	39	67	36	72
GCCAACCCCTCAAGGC	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCTGCACAGTAA	ref_5365_fdr	124	73	171	130	95	120	80	122	93	143
CAACGTCATGCCAACT	ref_5365_fdr	4	0	4	0	2	7	4	5	2	4
CGACGATTCTATGTCG	ref_5365_fdr	51	23	38	55	18	39	28	46	30	46
GGCGTGCATGAGTCTC	ref_5365_fdr	20	15	40	32	19	29	22	35	18	39
GGGGGGCATGCCGGCG	ref_5365_fdr	34	13	32	33	9	29	9	17	13	23
ACATAGGTGGATTCTT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTGGAATACCAG	ref_5365_fdr	21	14	34	22	11	20	8	26	7	25
CATGTCGTGTTGTCTA	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGGCCTTCAGCGG	ref_5365_fdr	44	23	39	34	16	36	16	46	18	43
TAATTGCGCAGCGGCT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTATTGCACATC	ref_5365_fdr	19	15	11	16	11	30	9	6	9	10
TAGATAGCGTACGCAA	ref_5365_fdr	54	17	69	54	27	64	22	45	35	40
GCTCGCCTAATATCAT	ref_5365_fdr	45	29	66	45	25	41	27	55	38	36
GCTTTTAGGAGCAGAA	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TGACACTCTTCAAATA	ref_5365_fdr	6	3	7	6	4	6	6	5	10	2
GGGATCTAATACCGTG	ref_5365_fdr	11	16	7	9	17	10	21	13	23	7
CGGCTGATTTCGATCA	ref_5365_fdr	53	37	87	58	24	49	40	73	32	50
CCTGGACACTTATCCT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTCCTTTTGGAAT	ref_5365_fdr	62	31	65	75	27	74	28	47	29	61
CCTTCGCCAGGCGTTG	ref_5365_fdr	55	35	68	65	30	55	41	50	42	57
TTGTACTCATTTACAG	ref_5365_fdr	235	114	305	250	121	252	122	223	117	225
GTCATTTATCGCAAAG	ref_5365_fdr	11	7	15	11	3	14	3	10	4	14
GAGGTGCTTTTGTGAA	ref_5365_fdr	8	3	5	4	4	5	4	8	3	0
ATCCGGTGATCGTTAT	ref_5365_fdr	22	7	26	29	10	19	8	22	10	21
GCAATTGGGCGAGACT	ref_5365_fdr	28	15	30	28	13	14	22	26	16	20
AGTGTTTCACAATCTG	ref_5365_fdr	37	24	36	45	15	29	39	35	30	27
CCAGGCGCTTTACCCC	ref_5365_fdr	60	122	121	95	112	84	135	92	158	65
CCGGGTTCGGTGGCCG	ref_5365_fdr	116	87	130	103	85	97	85	120	87	102
GTGTAAAACTATATTA	ref_5365_fdr	31	21	41	37	17	31	21	28	23	19
TCGTTATTATGCGGGT	ref_5365_fdr	230	151	348	298	156	285	146	279	128	233
CCACGGTCGCCCTGCT	ref_5365_fdr	6	12	10	9	27	8	9	9	14	9
TGTGTCAATCGAACTG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGGTGAATTTGTC	ref_5365_fdr	77	36	68	57	44	58	41	80	37	56
ATCGGACCGGATTACG	ref_5365_fdr	33	18	30	36	13	18	17	26	15	18
GATGCGTTCGATAATG	ref_5365_fdr	40	17	60	53	32	50	31	43	19	34
TTTTACTCTGCCATTA	ref_5365_fdr	267	178	360	299	191	280	158	281	169	270
GCACCCGAAATTTGTC	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTCAAGCTGTGCG	ref_5365_fdr	11	6	8	4	13	6	7	3	12	8
CCATCCGTTCATCTAG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTCTGGCAGGTCA	ref_5365_fdr	110	72	128	112	58	122	67	108	75	107
GCACCATCTTAGCTCG	ref_5365_fdr	35	17	42	33	12	16	15	26	14	19
GGCGATTGCTATTATC	ref_5365_fdr	113	71	123	120	55	110	71	112	61	113
CTGATGATTTGTATTG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCTTGCAACTTAGCTG	ref_5365_fdr	24	18	35	30	16	27	20	30	23	33
CTTTTGTGCTCGTAAG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TATACACGTGTCTCGA	ref_5365_fdr	298	139	327	302	147	283	166	241	161	278
TAGTTCGGCCCGAAAT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTGTTCCCCAAAC	ref_5365_fdr	62	47	65	79	36	55	31	67	50	68
GTCATGGTACCTTCTT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGACAGACCCCG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCTATCAAACTGC	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGGGCCTGGAGGGTGC	ref_5365_fdr	61	30	73	74	39	52	44	58	38	71
CCTTTCTCTGACGTTG	ref_5365_fdr	16	31	22	22	16	8	27	12	38	18
GAACGGTGGGCATCTT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCGATAGTGCATT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGGATGCCCGTCG	ref_5365_fdr	182	110	231	180	101	163	83	140	83	146
CCTTGCGTTCCTGCGA	ref_5365_fdr	30	13	15	26	28	23	24	15	18	19
ATCGGAGCATGCCGTT	ref_5365_fdr	39	17	64	55	31	41	13	47	10	41
TGATGAAAATTTTCTT	ref_5365_fdr	52	26	68	59	23	47	24	58	14	61
TATTATAATTAATACC	ref_5365_fdr	271	145	376	279	107	234	179	209	140	220
AGATCCGTGAAACGTT	ref_5365_fdr	110	59	101	117	75	109	83	104	70	107
TTGCGCTCTTGCTGGT	ref_5365_fdr	20	9	18	25	8	17	6	12	19	4
TGTACACTAGATCCGA	ref_5365_fdr	8	1	6	7	4	12	6	5	2	8
TGCGCATCCATTTTAT	ref_5365_fdr	17	18	20	20	28	15	25	12	17	12
CCTCGCATGATCCTGC	ref_5365_fdr	15	4	10	8	5	8	8	7	3	11
GGTGGGGCCAGGTCAA	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CACTACAGCTTTCGGG	ref_5365_fdr	93	45	108	95	64	77	60	77	61	89
TCTAGGCGAAAACATA	ref_5365_fdr	101	34	110	86	50	82	62	75	63	77
TTCCTTCATATCATAT	ref_5365_fdr	190	107	236	175	61	176	106	122	87	148
GGATAGGTCCCTTTGC	ref_5365_fdr	67	51	69	61	42	70	40	70	44	59
GTTCCCAGTTGTATTG	ref_5365_fdr	41	26	52	39	29	29	26	54	34	35
GGGAACAAATATGAAC	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGGCCCACGATTT	ref_5365_fdr	128	64	130	132	58	124	69	124	54	125
CCACGGTCGCCCTACT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCCAAACCCTCAAGGC	ref_5365_fdr	236	112	270	199	141	207	143	210	132	186
AGTCTGTATTAGTGTG	ref_5365_fdr	7	8	13	13	12	14	7	13	7	3
AATCTTTGCTCCTCCA	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
AACTGTCTGAAACGAG	ref_5365_fdr	33	39	44	39	36	47	41	42	37	53
GCGTGTCACCTGTAGC	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CATATGCTTAATTACC	ref_5365_fdr	130	93	175	186	70	149	94	110	74	118
TAGTATTCTGCGGCTG	ref_5365_fdr	29	18	39	31	21	32	17	21	7	28
AAATTCGGCATCACAG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
AACTGAAACAGATCTT	ref_5365_fdr	37	14	42	30	13	34	17	37	10	36
GGCACCAATTCAATCT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GAATTCTTTCAGGTTG	ref_5365_fdr	39	20	29	32	27	30	16	38	8	26
TTCCGCGATCCGCACA	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGCAACCGCTTTA	ref_5365_fdr	115	79	122	125	85	104	74	90	97	104
AGAAGGCTCAAGGACA	ref_5365_fdr	48	17	49	51	33	47	21	43	39	38
AATTGGGTCTTTATGC	ref_5365_fdr	289	170	299	276	187	214	232	238	209	246
GTTTGTGTACCTCGTT	ref_5365_fdr	50	25	47	39	24	33	25	32	21	33
ACGAACCTTCTTGTAT	ref_5365_fdr	123	63	166	145	58	133	67	127	60	117
TGTAGCGCACCTACGA	ref_5365_fdr	44	31	50	47	26	58	36	47	34	53
ACCGATGTATGTTAGT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CCCATCTTATGTATCG	ref_5365_fdr	16	10	20	17	15	5	11	9	11	20
TAACAATGGTTGGATT	ref_5365_fdr	94	37	120	97	50	69	33	84	40	69
TGGCCAGCTTAAATTA	ref_5365_fdr	94	47	127	90	48	108	57	91	52	100
CTGGCGTCTTATCATG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTACACTAAATTTGTG	ref_5365_fdr	51	43	88	89	48	57	48	66	35	75
TGCGTCTGGTGGCTCT	ref_5365_fdr	1	0	0	1	0	0	0	0	0	0
CTGTGACCGTCCCGAA	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TAACGAACTTGGGTCA	ref_5365_fdr	83	30	102	110	60	71	35	85	57	61
TTTATCATGGTGATCC	ref_5365_fdr	58	30	70	60	30	64	28	64	20	48
AATGCAAATTGCAAGG	ref_5365_fdr	101	77	127	96	54	95	54	100	56	88
TATCAAGTTCATCTCG	ref_5365_fdr	114	50	137	136	66	110	59	103	65	115
CGGCCAAGTTCTGTAG	ref_5365_fdr	18	12	35	21	11	22	16	18	10	22
GATCTTATTCCCGGTG	ref_5365_fdr	3	1	5	0	3	4	7	0	1	5
GAATTTTTGAATTTCG	ref_5365_fdr	15	2	20	20	5	18	7	12	5	16
CATATAAGAATTCGCC	ref_5365_fdr	8	6	10	5	11	7	7	11	7	8
TTCCGAGCTTTGTCAC	ref_5365_fdr	198	72	202	155	71	152	72	159	79	142
ATTGTTTCTCTGTGGA	ref_5365_fdr	86	46	87	65	50	71	34	70	62	75
GTACATTTATAGGCCC	ref_5365_fdr	69	38	100	72	39	69	35	65	38	69
TTCATTGTCAGACGTC	ref_5365_fdr	105	44	104	86	40	74	48	75	50	61
GCCAGATCAATTATGT	ref_5365_fdr	31	16	36	28	15	38	19	37	18	33
TTGGCAGTGACCTGGT	ref_5365_fdr	54	37	68	60	23	54	37	56	35	59
GCGATATCTATGTCCC	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTGCCTTCACATT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCGGTTTCTATGT	ref_5365_fdr	10	2	9	12	14	12	13	11	9	10
GTCACTATCTTCGCTG	ref_5365_fdr	113	53	143	128	42	114	57	100	50	103
CCTTACAGGTATCCCA	ref_5365_fdr	41	15	44	26	30	37	33	35	24	33
ATTTCACAACCACATG	ref_5365_fdr	59	32	64	52	34	58	24	51	33	38
TCAGTGATTCCCATCT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
AACGCACTCGGGGTCT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTATCAAGTGGGT	ref_5365_fdr	14	8	13	7	4	11	15	22	6	5
CTCTCCCGTAGCTTTT	ref_5365_fdr	34	94	42	45	74	37	88	40	82	28
CATGTCTTCGCTCCAG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GGTACGAAAGGACTAT	ref_5365_fdr	177	86	201	222	80	148	82	180	90	173
TCAGAGGTTTGTGTAC	ref_5365_fdr	23	8	21	19	15	28	7	16	5	22
CGTCGAATTTTTATCA	ref_5365_fdr	32	28	42	55	22	39	29	24	23	43
TGTACGCTATTCGTCG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTTAAAACTAACCCAT	ref_5365_fdr	41	29	44	43	27	37	18	38	14	40
TTTCCGATGGTTACTT	ref_5365_fdr	111	69	129	102	60	98	66	84	75	88
AAAGCTGTAACTTCGT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTACCTTTGCGAT	ref_5365_fdr	96	61	142	105	51	98	63	102	67	94
GCATGTTCCTAAAGCT	ref_5365_fdr	46	28	48	61	37	32	25	50	40	34
CGCTCACCTGCGAGCG	ref_5365_fdr	10	4	5	6	8	8	4	7	3	10
ACCATAACGTCTGTCA	ref_5365_fdr	27	13	33	12	7	13	17	32	15	28
TAGTCAATGCTTGCCC	ref_5365_fdr	100	74	116	118	60	127	50	85	68	91
CTAGCATGCCGAGCTT	ref_5365_fdr	20	11	24	28	13	27	11	36	7	25
ACAAAAGGGATCCCCT	ref_5365_fdr	217	110	313	261	101	215	135	225	115	181
GTTGGAGGTCGCTTAG	ref_5365_fdr	19	10	11	11	6	13	9	12	4	10
GCTATTAGTTTGTTCG	ref_5365_fdr	31	13	19	13	19	25	18	16	17	31
GCGCGGTTCAAGAGTG	ref_5365_fdr	69	32	87	86	36	61	51	57	34	67
AAAGCCTGCTTTAATT	ref_5365_fdr	72	30	80	61	39	52	34	68	46	56
TTCTGGATTACCCCTG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGAGGTGTCATCT	ref_5365_fdr	87	47	71	83	43	71	54	58	57	53
GGTGTTTTGTGTTATC	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTTGTACTGGCAG	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCCGTCGTGCCAT	ref_5365_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCATCAGGTTGTG	ref_3698_missing	21	37	22	33	29	22	40	20	38	25
TTTATTTAACGCTTGC	ref_3698_missing	5	6	15	10	13	10	14	9	13	10
ATCAATCACGGCTCGT	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
CTACCCTCCCAGCCAT	ref_3698_missing	7	20	15	15	21	10	20	6	22	8
TAAAGTAGCTAGCTAG	ref_3698_missing	13	24	19	8	17	6	15	10	16	10
TCAGCGACGATGCATT	ref_3698_missing	2	6	1	1	4	2	1	0	2	0
GCGATTCTATACGCGG	ref_3698_missing	29	44	33	27	31	18	34	25	38	36
GAAATTCGTGTCTACA	ref_3698_missing	42	48	57	39	42	35	46	36	38	35
CCCGGAGTGCAGTCTT	ref_3698_missing	6	11	10	10	10	4	11	8	12	6
GTAGTTGAGTCGAAAA	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
CGCCGATTATGTAATG	ref_3698_missing	80	96	112	97	100	74	109	81	103	84
ATGTAGTACGCGGTTG	ref_3698_missing	29	29	18	26	28	23	24	13	22	18
CCCGCCTGCGGGTTAC	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
GTGCGGGGACTTGCTC	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
GATTTACAGCACCTGA	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
GCTAAACATTCCTGGC	ref_3698_missing	15	3	7	8	12	7	11	7	10	7
CAGCGAGTGTCCTGCG	alt_3698_missing	71	84	79	85	111	67	116	59	103	59
GGAGCCGAGATTTGCG	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
GCCGTCCGATGATCCC	ref_3698_missing	10	12	12	10	11	5	8	7	9	5
TGAGATATCATTGAAT	ref_3698_missing	55	69	55	42	61	43	57	51	56	51
TTCTGCCTTATTTTTT	ref_3698_missing	14	21	17	10	26	14	21	20	25	10
TGTATGGTGTGTGCGT	ref_3698_missing	11	26	31	19	19	19	28	13	33	16
TTGAATCATACATGTA	ref_3698_missing	7	18	4	16	20	18	21	17	19	7
TCATCACATGGACTCT	ref_3698_missing	26	21	20	17	21	18	17	21	30	23
TGCGGTCTGACCACTT	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
AACCTAGTTATAATTT	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
GTTCGTAATTAGTCGC	ref_3698_missing	91	98	123	91	121	87	99	105	130	75
TCACGCCCCGAAGTCT	ref_3698_missing	43	86	80	65	91	56	84	48	113	66
AGTTCTTTTACGGTCT	ref_3698_missing	51	63	48	51	54	54	67	35	69	39
AGTCTTGGTTCAGTAT	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
GGGCTCTGAGGATTCA	ref_3698_missing	31	47	37	32	29	24	37	37	39	29
ACTGGACCCATAGCCT	ref_3698_missing	1	1	9	3	6	3	4	3	5	4
TTTTGGGTACCTACAA	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
TCATTCTTTTGTCATC	ref_3698_missing	19	23	42	27	28	22	37	26	50	24
CAGCCTTTATATTAAT	ref_3698_missing	2	9	3	6	18	4	19	4	14	9
TCTTGGCTTTGTGTAT	ref_3698_missing	9	11	5	5	9	5	7	14	11	5
GTATCGGAGATTGTCC	ref_3698_missing	10	17	9	4	15	8	10	3	13	5
TCGTGTCTTTAGTCCA	ref_3698_missing	1	4	2	1	3	1	2	2	3	0
GGCAACCTGTGCTTAC	ref_3698_missing	0	0	0	0	0	0	0	0	0	0
ATGTCATCCGACGACG	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCGTGCAAATTGC	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCGGCTTTGGCC	alt_2078_reverse	12	32	11	14	21	11	20	11	13	18
TATTGTTTCCAGCGAA	alt_2078_reverse	41	56	49	26	51	26	68	32	55	30
GGGTACATGTATGTAG	alt_2078_reverse	5	11	3	8	6	1	10	5	9	7
CGCTAAGCAGCAGTGA	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTGTCTCGTCTCT	alt_2078_reverse	39	69	43	42	70	35	61	33	81	35
TGCTTTTTTGCTATGG	alt_2078_reverse	11	19	8	5	17	7	16	15	16	13
AGCAGCGGTCGCTTGT	alt_2078_reverse	11	12	5	6	11	11	11	9	16	20
CGGTTGTAAGTGGAAC	alt_2078_reverse	6	11	6	13	15	4	23	2	17	5
GTGTCTGGTTGATGGT	alt_2078_reverse	31	68	42	31	83	37	83	51	82	41
CCAATCCGACCAACTC	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
GATATTCCGGGTAATG	alt_2078_reverse	112	129	89	104	184	105	143	99	177	98
TTGGCTGCATTCTCGA	alt_2078_reverse	8	16	30	8	19	14	21	15	24	15
GTTCGTTACTTGAAAT	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGGACTATTCTTC	alt_2078_reverse	5	8	2	6	7	8	7	9	7	7
AACTATTGGTAGAATG	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
GTAAATAGTTGGGCTT	alt_2078_reverse	57	92	63	57	102	58	88	46	101	47
TATCCGCGTCCCTCAA	alt_2078_reverse	13	37	43	24	44	23	50	23	52	29
GAACGATAAGGAGTAT	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAATCACGGTATG	alt_2078_reverse	54	61	76	62	77	51	71	45	74	44
TCGAATTACATTGTGA	alt_2078_reverse	16	20	13	15	30	13	20	9	19	8
GGATAAGTTCGGCGGG	alt_2078_reverse	9	10	4	6	14	4	7	8	16	4
GGGATCACTAAGTACC	alt_2078_reverse	25	32	25	16	19	12	40	20	26	18
GGGCGGCTTCCAATCT	alt_2078_reverse	19	34	18	28	30	24	30	15	25	18
TAAGCCTCGACCATTC	alt_2078_reverse	15	21	11	18	20	14	16	3	25	6
GGTACTCAATGCCTCT	alt_2078_reverse	34	56	25	23	37	27	47	16	55	35
CCTACGCTAAATCATT	alt_2078_reverse	39	119	56	44	114	58	115	58	139	58
GTTTCGTCATATAAAC	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
GATTTTTTCTCATGGG	alt_2078_reverse	70	96	78	57	67	51	79	42	105	62
TCTGTATTATTCAATT	alt_2078_reverse	31	35	40	20	41	14	39	26	31	31
GTTCTGCCGCAAATTT	alt_2078_reverse	50	86	69	46	88	45	93	45	88	40
GCCGACAGGCGCTGGA	alt_2078_reverse	7	19	11	11	18	8	6	4	15	14
CTACTACACAACAGTG	alt_2078_reverse	5	10	5	3	5	3	12	3	5	0
AACTCAGGGTGGCAGA	alt_2078_reverse	86	90	89	86	99	71	105	64	109	53
TTATTAATGTGTAACC	alt_2078_reverse	67	95	91	79	143	66	106	69	141	50
GTTATCTTCACTGTTG	alt_2078_reverse	14	15	17	16	21	13	25	17	19	15
GCGTATTTCCTCGTAT	alt_2078_reverse	10	18	26	10	9	7	13	15	13	10
AGTGCGTATTATCTCC	alt_2078_reverse	3	4	5	6	1	2	6	2	7	3
CAATGGTTGACCCGAC	alt_2078_reverse	14	35	26	19	26	10	26	11	28	10
ACGAGCGGCTTCTAGA	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
GATACAGTGACCCCGC	alt_2078_reverse	23	35	18	13	26	17	36	22	38	10
CGCCGTGTTTAAGACG	alt_2078_reverse	1	1	1	1	5	0	2	1	4	2
TGTTTTCTATCTTTCT	alt_2078_reverse	4	3	5	1	6	3	5	2	6	3
CGTGTGGACTGTGCCA	alt_2078_reverse	62	157	104	94	153	82	160	73	171	75
TGCGTTTCTTTAATCC	alt_2078_reverse	19	31	39	24	50	30	60	34	58	29
CTTTGGCAGGAAAGAT	alt_2078_reverse	33	45	40	26	42	34	42	35	61	13
TCCCCCGTCCCGTGGA	alt_2078_reverse	2	9	2	6	10	5	8	3	22	2
AGCATAGAGTCGTGAA	alt_2078_reverse	8	12	3	7	12	7	12	8	10	3
TTCATGTACATTGTAC	alt_2078_reverse	72	126	91	78	140	51	142	80	126	62
CGTATGACAATTTTCG	alt_2078_reverse	8	12	9	6	8	4	9	7	11	4
TGCGTCGTCGCTTGCT	alt_2078_reverse	169	267	166	148	296	155	286	135	342	123
TTAACTTCGTGGAAGT	alt_2078_reverse	6	14	12	12	9	7	4	8	15	6
GGATAGCGATGTCCTC	alt_2078_reverse	22	38	27	23	25	20	28	16	36	20
GTTAGGTTGTTTGTTC	alt_2078_reverse	49	98	60	53	81	41	98	44	96	55
AAGGCCCGTTTCTCTC	alt_2078_reverse	162	263	252	177	300	182	214	162	288	159
GTGCGCCGTAACATTA	alt_2078_reverse	17	25	38	13	21	6	18	11	24	14
GTTGAACGGAGATCAG	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
CTAATTCCGGGCCAAA	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGCAGCGTCGGAT	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
GGCCAGCACTGACTGA	alt_2078_reverse	27	62	30	25	45	21	53	32	40	23
GTGTCACGTCTAGCGG	alt_2078_reverse	24	65	51	45	68	43	81	40	68	50
AGTTACGGGGTCATTA	alt_2078_reverse	14	17	20	13	19	14	23	16	19	9
TTTAATCGATTCAGGG	alt_2078_reverse	35	66	62	59	63	35	58	36	80	41
CATTGTTGAACAGCAT	alt_2078_reverse	2	5	3	0	2	4	4	0	6	1
TGCATTTTTCGGTGTA	alt_2078_reverse	33	54	37	34	44	39	50	44	54	31
ACTGCACAAATAGCCA	alt_2078_reverse	11	18	12	8	22	9	6	12	13	6
CGTATTAGGGTTTGAA	alt_2078_reverse	52	93	50	59	94	48	74	43	89	28
GGGGATCAATAGCGTT	alt_2078_reverse	27	22	23	17	29	22	30	23	25	20
CGTCCAAAGTCTTTGA	alt_2078_reverse	26	39	33	28	54	19	39	25	71	17
GTTCTAGCAACTTTTT	alt_2078_reverse	10	21	11	12	21	15	24	15	23	19
TGCCGCAATGCTAGCA	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAGTAATAAGTGC	alt_2078_reverse	35	52	55	31	61	39	57	39	62	31
TCACGCAGGCCCCTAA	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGCTTTTAATCTT	alt_2078_reverse	34	47	26	33	46	28	56	18	50	31
GTCGTACCTCCGAAGC	alt_2078_reverse	50	103	55	51	147	52	139	54	127	40
AAACAAGAGTCTTCTA	alt_2078_reverse	16	21	18	15	17	17	25	19	29	12
GCTGGGTGTTGCCAAG	alt_2078_reverse	6	5	17	7	17	7	10	6	12	5
TGCCAGCGAGGACGGC	alt_2078_reverse	36	44	36	36	48	35	41	45	49	39
ATGAGGGGTATACTCT	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCCCGTTTCTCTC	alt_2078_reverse	0	0	0	0	0	0	0	0	0	0
ATAATTAAGACTCTCA	alt_2078_reverse	6	16	13	4	15	9	11	6	11	8
TCCGTCAATATCCACC	alt_2078_reverse	8	9	7	6	6	9	8	2	15	3
GGGCTTACTTGCTACA	alt_2078_reverse	85	143	97	115	175	103	156	91	150	74
TGGTTGGAGTTGCTCT	alt_2078_reverse	39	55	49	39	49	36	53	45	69	38
ATCCGTTAAGTATCCC	alt_2078_reverse	33	31	42	29	39	20	26	26	31	21
CCACACGTTTCTGTTT	alt_2078_reverse	36	38	30	34	41	21	69	19	54	12
TCCGAATAAGCACCCC	alt_2078_reverse	33	28	25	20	35	28	28	23	29	23
ACCACGTTATTTACCG	alt_2078_reverse	15	27	15	16	22	14	26	20	25	12
CGAATATGGTAACTAA	alt_2078_reverse	48	86	89	63	99	55	84	57	99	53
TATGCCAGCTGGATCC	alt_2078_reverse	46	56	62	67	83	46	66	39	61	37
GGCCCCATTGGGCGCA	alt_2078_reverse	4	7	5	16	10	4	6	4	10	5
GTAGGTATGAGAAACT	alt_2078_reverse	27	37	38	31	39	21	29	14	41	21
CGTTGCCCACCTGTAT	ref_6004_new	19	34	20	17	49	14	36	12	38	19
AACCGTAACTAAAGAG	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TCACGGCATTCCTGCC	ref_6004_new	22	35	29	25	41	32	51	18	40	9
CATCTGCCTGTATCAA	ref_6004_new	14	44	13	22	56	24	61	22	54	11
CGCTCGTGGCTACTGC	ref_6004_new	4	5	2	4	5	4	5	2	11	8
ATCCACCACGATGATT	ref_6004_new	13	25	16	14	28	17	38	18	26	14
TCGGTGATCGATGGGC	ref_6004_new	7	28	12	6	22	10	12	18	20	8
GGGCGAACTATTGGGC	ref_6004_new	0	2	1	0	2	2	4	0	3	2
TCGCAACAAGATGGCC	ref_6004_new	16	17	30	12	13	24	17	12	18	16
GGACCGTACGCCCAAT	ref_6004_new	20	15	12	11	21	5	37	11	23	24
CGCTCTCTCGGTCCCA	ref_6004_new	30	61	47	29	59	37	67	36	61	29
GTTGTTCCATGATTTT	ref_6004_new	8	10	10	6	17	12	12	6	26	7
CGCTTGTTACTTCTGA	ref_6004_new	8	6	9	5	15	5	20	8	11	3
TACAGCCCCGGCCTGA	ref_6004_new	41	76	50	40	82	29	71	22	84	22
CATCCTTATTGGGAAC	ref_6004_new	36	59	39	18	80	41	80	20	54	33
ATCGTGCTTTTTCGCT	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TCGTTTTATTCGCACA	ref_6004_new	18	32	28	15	42	12	45	24	29	14
GGGTACAGGGATCGTA	ref_6004_new	12	14	14	14	12	12	20	10	24	7
GATGGCGGTCACCCAG	ref_6004_new	0	0	0	0	2	0	0	0	2	0
GGTCTGGGTATTTAGT	ref_6004_new	1	0	1	1	0	0	2	0	1	1
GTCCCGTTGTTCAACG	ref_6004_new	10	27	16	10	29	11	31	11	19	16
CGTCCCCCATACTTAC	ref_6004_new	0	3	0	0	2	1	2	0	3	0
TCTCGTCTTGGTTTGG	ref_6004_new	0	0	0	0	0	0	0	0	0	0
GCTTCTTTATAGGTTA	ref_6004_new	23	32	20	10	19	10	22	9	26	16
TTTATCGTATTGATAG	ref_6004_new	0	0	0	0	0	0	0	0	0	0
CTTCGTAGAAGGGCCT	ref_6004_new	5	20	15	13	20	7	22	10	23	1
TTACGTCTAGTAACCG	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TTGCAATGTTCTAATT	ref_6004_new	0	0	0	0	0	0	0	0	0	0
CTAGAATTCTGTTCAT	ref_6004_new	9	11	5	8	10	7	15	6	12	4
CTGTAGTTCGTGTCAA	ref_6004_new	0	0	0	0	0	0	0	0	0	0
GCAACAAACGGGCTTC	ref_6004_new	3	11	13	12	19	8	7	4	19	7
TTGCATGCCTTCATTG	ref_6004_new	0	0	0	0	0	0	0	0	0	0
CCACCCCGGGTCCCGT	ref_6004_new	11	32	21	10	37	10	34	18	40	15
CCATCTACACAAGTGG	ref_6004_new	8	17	17	6	16	12	13	6	20	9
CGCGCGTGCATCTTGC	ref_6004_new	65	108	61	49	99	54	123	50	101	56
GTGCCACTTAAACAAC	ref_6004_new	3	9	3	2	1	1	10	2	6	1
TATACGTTATCGTTCG	ref_6004_new	42	71	49	43	65	37	84	50	76	38
CGTTTTCTTTGTAGCG	ref_6004_new	19	29	20	9	27	18	29	10	30	10
ACAATCGCCAATTACT	ref_6004_new	6	14	5	3	11	7	18	2	9	2
CCGCTACGTGTTATAT	ref_6004_new	7	17	6	8	16	7	16	4	20	7
CTTCCTTGTGCGAGTA	ref_6004_new	11	31	17	12	36	18	31	6	25	20
CAAAGCCGTCGGAACC	ref_6004_new	22	39	16	21	48	22	53	15	59	17
CTCTCATATGCTAGCC	ref_6004_new	0	0	0	0	0	0	0	0	0	0
ATGGGTCCGAGACTTG	ref_6004_new	1	15	7	8	18	6	13	4	11	7
TTGGTTATCATGTTTC	ref_6004_new	2	12	8	7	11	2	10	2	12	7
TCTATATTTATTCTAC	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TACAGATGCTTGTGGC	ref_6004_new	1	9	0	0	5	6	7	3	6	1
AGTGGTTTTGTTCCCG	ref_6004_new	3	7	11	3	8	7	7	4	8	2
GGCCAAGCTCCCAATG	ref_6004_new	0	0	0	0	0	0	0	0	0	0
GTTGGAGGGGTGATGG	ref_6004_new	23	46	16	20	32	15	36	17	44	18
CACTATATCGTTGCTC	ref_6004_new	8	7	6	5	8	5	15	4	11	2
GGTTCATCTTTAGGTT	ref_6004_new	37	53	30	27	75	23	61	25	64	33
CATGGACGTAAAGAGT	ref_6004_new	8	24	22	18	29	16	33	9	32	17
CTGCTTTCATGTTAGT	ref_6004_new	34	83	51	37	80	29	75	31	90	45
GGCACCTCCAAAGATT	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TTAATGTTTCCTTCAA	ref_6004_new	92	152	112	93	178	86	191	114	173	86
TAGCCAAAGGGATTGC	ref_6004_new	0	0	0	0	0	0	0	0	0	0
AAGGTTCATCCGGCTT	ref_6004_new	5	8	0	3	7	3	1	1	8	2
TGTGGATTATTCGAGT	ref_6004_new	5	11	7	4	8	1	13	2	4	3
TGTGTGAACGGCTGAG	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TACTAAATGGCGACTT	ref_6004_new	0	0	0	0	0	0	0	0	0	0
GATTATTGGTCTGCCG	ref_6004_new	5	4	3	1	4	2	9	4	8	2
GGCTACAGAGTCTCCG	ref_6004_new	32	47	44	25	45	27	54	22	65	24
GGCACCCAGCTTCTTC	ref_6004_new	2	1	1	5	5	4	4	2	2	0
ATCGATAGGGCACGTA	ref_6004_new	12	55	27	28	49	20	46	21	52	13
GATGATTTATAGTTTA	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TAGAGATGGCTCGTAG	ref_6004_new	17	50	36	25	36	26	50	22	56	21
CTTCAGGGTTGACAGC	ref_6004_new	0	0	0	0	0	0	0	0	0	0
TCCCCTGGTATTTCGT	ref_6004_new	26	72	31	29	85	26	73	21	78	27
CGTCGCTTATCGAGTA	ref_6004_new	2	8	4	4	10	5	11	2	4	3
TTTAGCTGCAAGCCAG	ref_6004_new	37	51	39	31	52	37	65	31	74	26
CCTCCCTATAGCTTGA	ref_6004_new	0	0	0	0	0	0	0	0	0	0
GGAATCTTAATATAGT	ref_6004_new	17	33	25	14	48	22	43	15	42	20
AAGCCACTATCTAGAA	ref_6004_new	0	0	0	0	0	0	0	0	0	0
GAGATTATTGCGAACG	ref_6004_new	2	6	4	3	6	5	8	3	18	2
TCGTGGTATCTGACGT	ref_6004_new	0	0	0	0	0	0	0	0	0	0
CGGCCAACCATCCTCC	ref_6004_new	23	53	28	21	61	25	63	24	53	21
TAGGCGTCGATTGCTC	ref_6004_new	43	57	50	31	77	35	80	26	77	37
AAATTGTGTTGCTAGA	ref_6004_new	24	62	36	25	80	32	72	33	79	25
TGAGTGACGTTGGTCA	ref_6004_new	14	11	3	7	17	5	11	13	22	6
TCCTATCCGCCATAAG	ref_6004_new	42	81	42	37	97	44	73	39	94	36
TATCATGAATGTATGC	ref_6109_new	29	24	34	31	18	27	20	29	19	31
TGAATCCACAGTTTTG	ref_6109_new	62	44	65	51	55	39	52	52	50	54
GAAGTTATATTCTGTT	ref_6109_new	348	269	454	377	265	353	272	327	284	284
TAGGAGCTCCTGGGTC	ref_6109_new	153	155	169	144	164	102	182	138	168	112
ATCTGTGATGCGGGAT	ref_6109_new	35	22	32	34	31	25	32	34	22	24
GATCTATGGCTTTCAG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GCGCCAAAGCTACTTA	ref_6109_new	74	91	88	90	88	68	88	67	81	55
ATTTATGGTTTGAGAG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TTCAAATTGGGCGAGG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
ACCAAGTGTATAAAAC	ref_6109_new	34	22	30	29	32	31	25	32	38	23
GCTGGTTCTTTATATT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TTCTCCATGATGGAAG	ref_6109_new	77	62	78	86	54	71	71	67	50	47
ATGCTGTACCAGCCTT	ref_6109_new	26	26	38	23	20	31	23	32	19	14
ACATTGTCCCTTGCGT	ref_6109_new	27	10	17	21	19	20	20	18	10	24
TTTGCCCCCTACTCTA	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TATCCATTAGGCGCAA	ref_6109_new	79	90	140	127	86	73	81	99	76	86
GGTTGGCTACATACCG	ref_6109_new	207	191	249	211	182	189	193	210	185	199
GTCGTCACGTCGCCAC	ref_6109_new	8	6	8	9	8	12	7	12	12	8
GTTCCCCTAATTCTAG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
ACGTCCAGGGTATCTC	ref_6109_new	42	26	28	31	20	21	26	21	20	23
ATGAATATGTGATCTC	ref_6109_new	54	43	72	68	56	67	42	65	62	55
CTCCGGTACCCTACCT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CGTTCCGCTAAAGTCA	ref_6109_new	8	8	10	8	9	7	4	13	5	9
ATTGTCCCTCTGCATA	ref_6109_new	29	30	37	34	25	32	34	27	41	26
GCCAGCCCCCAGCTTT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GGAGCAAATGCGCTTG	ref_6109_new	104	90	116	78	79	97	90	74	103	76
GACACTTTGATGCCTT	ref_6109_new	43	41	48	36	27	45	43	33	45	36
CATCGGCCTAAGACCT	ref_6109_new	110	103	130	106	107	128	121	135	121	112
AGAGAGTTTAAGGTGT	ref_6109_new	0	1	0	0	0	0	0	0	0	0
GTATATCTGGTGACAT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TGTCTTATCGCATTTT	ref_6109_new	20	20	27	23	17	13	14	19	17	14
CCCTGTGATAGGTTTT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
ATCGTTCGCGGTGGGA	ref_6109_new	18	5	21	17	12	17	8	15	20	17
TTCGCCCCGTCTGGTC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GCCTAATGATGGTATA	ref_6109_new	14	16	17	18	14	16	14	8	11	18
GTCCATTAACAGCATA	ref_6109_new	33	35	46	52	35	48	36	40	43	48
TATCTGACAGGGTCTC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CTTCAGGAATCGGGGG	ref_6109_new	18	16	33	26	15	29	20	17	21	14
TTCTGGTTGTGACAAT	ref_6109_new	76	59	103	91	71	72	82	64	69	63
CGTTGCACTTGTCTGT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
AACAATTTTATTAGGT	ref_6109_new	50	38	51	37	33	45	30	35	32	41
AGAATAAGATCTCCCT	ref_6109_new	66	51	93	68	52	62	59	57	59	70
TCGCTCGCAACTGAAA	ref_6109_new	17	17	12	6	25	10	21	14	25	9
CGTTAATGCCTCGACC	ref_6109_new	157	115	177	134	119	152	121	140	145	117
TACGAAACCCTTACTA	ref_6109_new	9	5	12	14	11	8	5	11	8	8
AATTCGGAATATTTGG	ref_6109_new	188	170	215	207	146	187	156	193	168	186
ATGGGTAACCATTGTT	ref_6109_new	35	28	31	35	27	38	41	23	25	23
TCGTTATCACATGTTG	ref_6109_new	47	45	57	45	37	45	35	44	49	43
GCCTATTAAATTCCGA	ref_6109_new	16	4	13	22	10	7	3	16	8	8
CAAACTCCATTTGATT	ref_6109_new	118	105	137	144	107	93	98	105	115	99
TTTACTGCGTTATTGT	ref_6109_new	9	9	15	18	11	12	11	11	13	10
GATGGAATTGGCAGTC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CCTTTCAGTTGCGGCG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CATGGCGAGCGGATCG	ref_6109_new	8	28	27	25	20	22	19	33	16	20
ATCATACAGTGCAAGT	ref_6109_new	18	12	25	19	18	10	20	12	11	12
TTGGCATCCCGTCTGC	ref_6109_new	39	37	52	30	38	28	39	36	48	30
TTTAGCTAAATGATCT	ref_6109_new	72	68	86	72	79	50	78	75	79	61
CGTAGAAGTACATTTC	ref_6109_new	43	29	44	39	27	43	50	32	36	42
AGTTATAGCTGCCGCC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GAGCCCGGGGCTACTA	ref_6109_new	40	35	69	45	51	48	32	46	33	36
GGTACTCTGTACAAAA	ref_6109_new	72	38	76	87	66	83	61	88	57	59
TACACTACTACAAGCC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TAGCGTCCGAATTCGC	ref_6109_new	170	124	199	178	144	176	145	169	136	177
CTCCAAGTATTGGCTG	ref_6109_new	104	98	123	87	79	79	108	107	77	109
GCATTGCAACTTGGCT	ref_6109_new	88	88	141	93	76	101	102	79	101	84
CGTAGCGCACAACTCA	ref_6109_new	55	69	62	66	64	49	53	71	62	74
GGCCTTACTGCATTCT	ref_6109_new	61	69	89	54	62	63	71	68	64	52
GTTCTTTGGCCAGTTC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GCAATAGCTACATGCT	ref_6109_new	64	63	94	70	71	77	59	70	72	62
CCCTTATTACTTGCGT	ref_6109_new	65	53	65	42	51	51	56	64	58	53
CCGGCTGTAAATACTA	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CCCTTACCCCTAGGAG	ref_6109_new	42	71	93	67	72	58	91	58	111	41
AGGCGTTTCCTTGGCA	ref_6109_new	33	32	49	44	43	46	38	25	44	40
CCACGTTCTGCGACAT	ref_6109_new	11	16	15	9	22	22	24	25	16	13
GAAGGCCATCTTCGCT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TACCGTGGTTTTATCC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TACAACATTTTCTGCC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GTGTGCCTTTGGAAGT	ref_6109_new	5	10	13	11	8	5	9	12	10	6
GATTGTACTCCACCGG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CCTTCAACCTATTATC	ref_6109_new	68	81	89	90	114	52	122	62	91	53
ATGCACCTTTGCTGAT	ref_6109_new	29	29	44	36	28	32	30	30	25	31
TTAGGATTCGTTTTCT	ref_6109_new	32	26	48	42	37	32	29	43	31	28
CATCTCACGTCCCGAC	ref_6109_new	7	28	30	29	18	26	19	18	22	14
CGACTGACTGCCGACT	ref_6109_new	242	226	288	233	266	220	267	211	253	193
GCTCATGCTTGATCGC	ref_6109_new	22	16	39	19	16	15	18	15	17	19
CCTTTTCTTTTTGCTG	ref_6109_new	73	54	86	69	54	51	57	59	49	54
CGATTCTACCGACTCT	ref_6109_new	48	42	57	49	55	47	29	48	58	53
AAACCTGCTTTGTTTT	ref_6109_new	26	12	37	14	21	30	15	17	18	12
AGATCGATTGTACCTA	ref_6109_new	14	11	15	6	7	6	3	5	14	7
AGCACTTCCCCAAGTG	ref_6109_new	1	10	4	4	13	5	12	3	16	2
GCGCCCCCAAGACATG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CCGTACACTTGCTTCA	ref_6109_new	27	58	38	35	32	39	46	26	42	25
TTCAGTAGGGCAGAGT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GGAAATAACTTCCTCA	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GTTGGGGATCTATCAT	ref_6109_new	45	51	60	51	70	53	54	50	71	58
CCCGTAAGGAGTACTG	ref_6109_new	72	87	84	70	63	75	60	57	75	63
CTACTGTTTGCAATCT	ref_6109_new	51	44	47	61	66	58	81	54	76	45
TATTGGGTTCATCATC	ref_6109_new	9	9	12	14	16	21	11	15	10	12
GTGTATTCATTTGTGC	ref_6109_new	11	9	12	11	3	4	8	2	3	5
CTGCTCCGTAATAATA	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TTCCGTGGTTTTTACT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
CCCTCTACCGAAGAAC	ref_6109_new	101	95	148	124	90	111	103	103	100	88
GTACAGAATTGTCTCC	ref_6109_new	11	15	7	8	13	9	17	9	7	8
CTGTTCGGTCAATTTA	ref_6109_new	47	38	83	66	50	60	55	37	67	58
GCCTACGGTTTATATG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
ACTCATACCTAATATG	ref_6109_new	37	28	37	31	30	26	22	19	27	23
GTTCTTGTTCTCGTAT	ref_6109_new	30	42	36	29	45	35	33	34	31	22
TCCGTTCACTCCTCTA	ref_6109_new	209	365	236	194	333	158	370	156	384	162
AGTTGATCCTTGTAAC	ref_6109_new	20	19	32	23	24	18	23	28	18	20
GGTTAAAACCCAGTTC	ref_6109_new	0	0	2	3	7	2	0	1	3	1
TGCGGCTTTATGTGCT	ref_6109_new	43	37	55	43	24	43	23	21	39	33
CCACCGTCGTTACTTT	ref_6109_new	3	2	10	6	5	9	6	11	9	13
GACACCCTATAGTCCT	ref_6109_new	16	14	22	26	18	20	14	17	16	15
TTTGGTTCGCTATAAA	ref_6109_new	98	79	123	113	66	85	79	67	87	82
CCAAATGGGAGGCAAA	ref_6109_new	44	36	48	44	30	42	33	32	36	44
ATGCCGCGATCCGTGC	ref_6109_new	16	18	14	18	15	18	11	16	14	12
TAGCAGCATTCGCACC	ref_6109_new	35	42	56	64	37	37	39	52	44	35
AGCACCCGCGATCGTC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TTGAGCCATGCGGACA	ref_6109_new	11	15	24	20	14	22	23	22	15	12
TTGGCCATTTGGTCCT	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TTCGAGTATTGTTAGA	ref_6109_new	0	0	0	0	0	0	0	0	0	0
ATGGTGTGAGCGGACG	ref_6109_new	0	0	0	0	0	0	0	0	0	0
GCCGTTCTATTTCAAT	ref_6109_new	18	17	23	26	16	16	17	12	21	16
TCGTCGGTGCGCATCC	ref_6109_new	32	49	61	56	36	42	47	42	43	38
CAAGGGTAGCGTTAGC	ref_6109_new	5	2	8	6	7	9	7	4	2	3
CCCGTGACCCCCAAAG	ref_6109_new	29	28	42	17	26	19	28	35	33	29
GTCAATTCTTTTCTTT	ref_6109_new	24	20	36	32	20	28	25	20	21	17
TAGCGTCCGAAGTCGC	ref_6109_new	0	0	0	0	0	0	0	0	0	0
TCCGATTGTACATAGC	ref_6109_new	28	18	22	19	31	32	38	27	26	18
CCCAATTCACGACCGG	ref_6109_new	57	44	45	59	57	56	41	51	44	41
TGTGGTATAGGGTAGG	ref_6109_new	85	67	99	66	60	84	75	77	75	63
GCCAGGCGTATAGCAA	ref_6109_new	23	36	37	27	23	26	40	24	40	16
GAGTTTCTTTTCGTTA	ref_534_RC	93	105	125	114	101	105	113	121	115	78
GGGATTTATTTTTAAC	ref_534_RC	0	0	0	0	0	0	0	0	0	0
CATATCATGAGTTAGG	ref_534_RC	18	23	20	17	26	38	29	28	33	18
GCCTTCCGGGTATCTT	ref_534_RC	164	192	244	174	182	159	168	138	201	155
CTAAGCACAATATTCG	ref_534_RC	78	78	68	68	70	83	74	59	80	53
CTTGTATACAAGTGAG	ref_534_RC	0	0	0	0	0	0	0	0	0	0
GATTCAGGTCTGCTTA	ref_534_RC	0	1	2	0	0	0	0	0	0	1
TGAGTACTTGATACAA	ref_534_RC	22	28	22	22	36	23	32	32	47	26
CGTGATTATGTTTTCG	ref_534_RC	47	43	61	40	58	64	50	33	55	40
GCATGGATATGCCGTC	ref_534_RC	13	9	10	12	5	8	12	13	8	11
CGCTCGAGTACCAGTA	ref_534_RC	20	23	45	32	36	28	33	28	35	38
GGGTCTGATGCTGTTT	ref_534_RC	11	23	25	13	23	13	20	15	21	18
GTCTGTTGCCCTATCT	ref_534_RC	67	81	80	61	91	69	74	66	82	57
CGATTTTACCCTCCAG	ref_534_RC	41	59	57	50	54	47	51	37	53	36
ACAAATGTCAGGTTCC	ref_534_RC	0	0	0	0	0	0	0	0	0	0
CTCGTCAGTTTCTCGC	ref_534_RC	60	131	68	73	148	67	106	67	152	69
CTACCCAATTTCGCAA	ref_534_RC	0	0	0	0	0	0	0	0	0	0
CTTTCATCATAGTGAG	ref_534_RC	0	0	0	0	0	0	0	0	0	0
TTACTCTAGCCTACGT	ref_534_RC	0	0	0	0	0	0	0	0	0	0
GGATCACTCGGCCACG	ref_534_RC	21	32	25	20	22	34	21	22	25	27
TGGTTCCTTTGTTATA	ref_534_RC	22	19	28	15	22	14	15	17	25	13
CACCTATGTATGCAAT	ref_534_RC	31	40	31	27	38	39	39	28	41	23
GCCGGTGTAGCAAAAT	ref_534_RC	14	10	14	16	11	9	17	18	22	11
CATGTTTGGGCTTACT	ref_534_RC	6	12	8	14	8	6	14	8	9	7
AATACCTCATAGTTTC	ref_534_RC	32	31	34	30	18	26	27	16	34	27
AAGCATCAAAATCCCA	ref_534_RC	0	0	0	0	0	0	0	0	0	0
GTGTTAGTCTTACGAC	ref_534_RC	9	10	18	8	9	9	17	5	13	7
TTCGTTCAGTACTACA	ref_534_RC	5	8	12	9	11	4	8	4	13	2
GTATGATCCATCACGT	ref_534_RC	0	0	0	0	0	0	0	0	0	0
TAAGCCTCACAGCTTA	ref_534_RC	10	27	20	20	19	21	9	19	28	13
CATCAGCGCTATCATT	ref_534_RC	0	0	0	0	0	0	0	0	0	0
TCGTTGACGCTCTGGT	ref_534_RC	3	3	3	1	2	0	4	0	3	5
TGTGGCATCTTCGCAT	ref_534_RC	14	24	27	26	18	19	25	13	22	13
CTGCCGGGCCGGCGAG	ref_534_RC	36	42	41	33	43	41	41	43	52	33
GCTTCCATGCGGGCCG	ref_534_RC	21	16	15	10	12	16	18	23	25	20
AATACCTTGATCTGAT	ref_534_RC	18	47	28	28	31	27	45	29	37	27
CATTACAATCGGGTTC	ref_534_RC	7	9	6	7	13	13	8	7	16	7
ACGTTTTCGAGCAGCA	ref_534_RC	0	0	0	0	0	0	0	0	0	0
CTTCTTTGCACATCAT	ref_534_RC	65	93	75	56	97	90	87	71	98	63
TCGTAGAGTCGAGGCC	ref_534_RC	23	58	28	16	45	14	53	18	55	16
AATTCGCTTATTCTGT	ref_534_RC	0	0	0	0	0	0	0	0	0	0
CGGGTAAACCAGACTC	ref_534_RC	38	49	31	36	48	45	38	23	52	36
GCGTTATTCCTACTTG	ref_534_RC	68	68	86	56	66	46	71	55	95	53
CATACCATTGTGCACG	ref_534_RC	67	107	93	91	83	62	100	61	97	71
ACTTCTGTCATAGGGT	ref_534_RC	239	256	283	229	337	216	313	263	369	205
CATTTCCGGAGTCAAC	ref_534_RC	43	39	43	36	37	23	42	31	41	34
TGGTATCTATTCAAGG	ref_534_RC	0	0	0	0	0	0	0	0	0	0
AGTAAGTCGGTCCGTT	ref_534_RC	13	14	13	7	19	7	10	11	8	22
CGAGTAGGAGACAGTT	ref_534_RC	0	0	0	0	0	0	0	0	0	0
GATATTTCGCCATACG	ref_534_RC	0	0	0	0	0	0	0	0	0	0
CCTCCTGTGGAATCAC	ref_534_RC	0	0	0	0	0	0	0	0	0	0
ATGAAAGCTCTTTTTG	ref_534_RC	0	0	0	0	0	0	0	0	0	0
TCTTGGTACCTTTTCT	ref_534_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCATATTCTAAT	ref_534_RC	8	14	2	8	2	9	8	6	9	12
ATGGGTCCCATCATTC	ref_534_RC	248	288	306	264	291	262	286	260	335	240
TTCTTTTTTAGAGGCA	ref_534_RC	10	1	10	3	7	0	7	3	7	8
TATTCCTGGTCCATGG	ref_534_RC	124	91	115	95	124	110	119	100	130	87
TAGGTCACACTCTCTC	ref_534_RC	17	21	16	13	27	8	19	6	23	11
ATGGCTAGTGCCTGTT	ref_534_RC	136	139	137	132	144	143	149	127	162	149
TTGTTGCATTAGCTCG	ref_534_RC	14	17	23	22	17	18	25	22	18	17
GTGTTTTGCTTCGCTT	ref_534_RC	0	0	0	0	0	0	0	0	0	0
TACCCTGTATCTTCTA	ref_534_RC	23	32	19	22	24	15	23	19	36	31
AATACGTGTCACTCAA	alt_6035_new	29	61	42	23	38	24	49	27	63	25
TTAGGCATATCTCTTT	alt_6035_new	15	23	21	13	19	13	21	13	19	8
GACTTTTTGGCATGTA	alt_6035_new	20	19	11	13	22	6	21	7	20	5
TCACGTCGTAGGCCAT	alt_6035_new	0	0	0	0	0	0	0	0	0	0
GGCTGTTATGGCATCC	alt_6035_new	0	0	0	0	0	0	0	0	0	0
ATCCACTCCGTTCCGG	alt_6035_new	6	15	4	4	14	5	25	4	25	4
TTTGTCTTTCATAATG	alt_6035_new	0	0	0	0	0	0	0	0	0	0
TGTTCGTCTTTGGTAA	alt_6035_new	0	0	0	0	0	0	0	0	0	0
GCACATATTCTCAGCT	alt_6035_new	0	0	0	0	0	0	0	0	0	0
GCTCTACGAACAACAA	alt_6035_new	0	0	0	0	0	0	0	0	0	0
CCGGCCCCTTGCCCGC	alt_6035_new	11	13	15	13	32	11	21	15	23	8
ATATCATTCCTAATCC	alt_6035_new	0	0	0	0	0	0	0	0	0	0
TAGCTGTTAAGGGCAG	alt_6035_new	15	26	16	17	35	15	31	14	22	10
ACGCCATGCCCTAGTC	alt_6035_new	0	1	0	3	0	2	2	1	1	2
CAGCGCTTGAAAGTGT	alt_6035_new	0	0	0	0	0	0	0	0	0	0
GAGGTTGAATCGGCTA	alt_6035_new	5	15	16	11	18	6	22	11	18	15
CGAAACAATTATCCGC	alt_6035_new	17	30	14	16	20	12	17	18	18	14
TATGCCTCGGCCCCTC	alt_6035_new	0	0	0	0	0	0	0	0	0	0
TATGGCATGATTTAGA	alt_6035_new	36	53	34	27	62	39	63	24	63	23
GTTGGCTCTACATCCC	alt_6035_new	0	0	0	0	0	0	0	0	0	0
ATACCTGAACTCGGCC	alt_6035_new	41	72	63	37	65	37	83	24	89	31
GACTTTTTGGTATGTA	alt_6035_new	0	0	0	0	0	0	0	0	0	0
TTGCTAACTTTATGGC	alt_6035_new	6	14	9	3	11	11	6	2	15	5
CGGCTCCTCTGTCGTA	alt_6035_new	13	20	17	23	21	14	30	7	21	12
GGGTGATGTGGATTCC	alt_6035_new	2	6	8	1	7	5	4	0	8	3
TGTATACAGGCTATTG	alt_6035_new	0	0	0	0	0	0	0	0	0	0
CTCGGGGTTAGACCGA	alt_6035_new	3	4	0	5	5	0	2	1	6	2
TGACTACATCATAAGT	alt_6035_new	0	0	0	0	0	0	0	0	0	0
TCAGCGGTGACCCTAC	alt_6035_new	70	147	87	72	129	69	133	51	129	75
TCCGGGTAGCCTTCGT	alt_6035_new	0	0	0	0	0	0	0	0	0	0
GTATTGTGTACGTTTT	alt_6035_new	25	29	30	16	32	6	40	24	38	14
TTCACATCACTCTGGG	alt_6035_new	0	0	0	0	0	0	0	0	0	0
CGTCTTGCGCCCCCTG	alt_6035_new	0	0	0	0	0	0	0	0	0	0
CAGCAGGTCAGCTCGA	alt_6035_new	0	0	0	0	0	0	0	0	0	0
TCCTTCGACGTATCTG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
GTATATTGGCGTGTTA	alt_3129_upstream	4	1	5	3	2	1	2	2	2	4
TTCCTCCACCCGTTTA	alt_3129_upstream	101	31	118	109	37	79	28	79	37	95
CGATGATTATGGATCA	alt_3129_upstream	97	33	119	109	28	93	35	107	31	88
GGAACACTTTTATTCG	alt_3129_upstream	1	1	0	2	1	2	2	5	0	2
GTGAGGGCGTTCACTC	alt_3129_upstream	438	120	492	453	146	396	136	400	155	389
TTCTAGGTTTGGCACC	alt_3129_upstream	104	48	122	121	35	102	36	113	51	103
TCGTGGTACAATTGCG	alt_3129_upstream	137	48	185	156	57	153	61	142	56	143
CATGCTGGTAGGTTTC	alt_3129_upstream	53	19	56	39	10	47	10	34	22	46
TTTAAGCCAGTCTTAC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTGCTTAGGAAGC	alt_3129_upstream	87	23	120	112	40	77	34	88	23	95
TGTCAAGATCTCGCTT	alt_3129_upstream	185	49	206	190	49	163	71	179	70	170
TTTCAGCAGGGGGTGT	alt_3129_upstream	250	69	254	224	76	193	78	209	73	166
TGTCAAATCAGAAATG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATATACCTTCGGCACT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
GGCCGCTTTAGTCTCG	alt_3129_upstream	0	0	2	0	0	0	0	0	0	0
ATCCACCGTCTAGACC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGCTTTTTCACAT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TACTGCTATCGCTACC	alt_3129_upstream	207	80	253	233	70	199	77	208	71	199
TTGACGAAGCCTAAGC	alt_3129_upstream	493	195	613	511	139	471	163	519	161	401
AGTCAGCTCTCACCAC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGTGTCTATGGT	alt_3129_upstream	518	184	666	556	188	544	204	506	209	475
CCTTAGTTGCGAGTGT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGTTTACGCTCCA	alt_3129_upstream	24	9	21	24	4	21	5	21	11	14
ATGCGCTGGGTCTACG	alt_3129_upstream	294	96	402	364	114	319	105	313	107	286
TGGATCTCACACCGTC	alt_3129_upstream	41	22	55	41	6	49	12	47	12	37
AGACATGGAAGTCGAG	alt_3129_upstream	345	99	449	395	106	368	113	361	107	330
AGATTGTAATTGCTGA	alt_3129_upstream	317	65	379	343	97	295	109	276	93	268
AATGATTACGATTGAA	alt_3129_upstream	337	117	448	341	113	356	129	361	112	313
AGTGCTATAGTTTCTG	alt_3129_upstream	33	3	46	27	8	37	8	35	12	22
GTGCTGATTTACGAAC	alt_3129_upstream	26	10	30	31	8	38	7	27	11	29
TTTGTCCGATATTATT	alt_3129_upstream	45	15	57	34	6	42	8	29	12	37
TTGTCCCTTTTCGTGG	ref_3129_upstream	225	50	256	206	67	177	74	204	59	169
CGGCATCACAGGGCTG	alt_3129_upstream	16	2	17	17	2	11	3	6	7	13
ACTATATCTCATGCTT	alt_3129_upstream	67	32	110	98	35	89	29	78	27	82
GAAATTTGATTTGGGG	alt_3129_upstream	80	24	86	120	27	100	44	96	31	78
CTTTGTGTGAACCAAA	alt_3129_upstream	193	50	253	190	51	187	53	173	77	188
CAACTCATCCAACCGT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGGGGTCTCGTTATTC	alt_3129_upstream	11	1	14	8	3	9	5	18	4	19
TTTACTATCCGTCTAG	alt_3129_upstream	93	32	128	96	31	81	31	99	30	86
TATCTGTACTGGGACT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTAGAACGCATGTGAA	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCCCCTGCCTCCA	alt_3129_upstream	20	13	41	22	14	16	20	27	11	20
TTGGGGTTCCGGTGGT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
AATCGCTCAACGTTGG	alt_3129_upstream	38	11	55	50	9	35	11	44	9	31
TATGGCCACCACCGGC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TCATACCCATCCAGAC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGTTTTCACGGGG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTAGTTTGGCTCC	alt_3129_upstream	43	12	38	32	9	22	8	31	8	23
ATAGTTTGATTTTGTG	alt_3129_upstream	79	37	108	87	49	83	32	99	41	93
CTATTTGATCTGCTAT	alt_3129_upstream	25	5	9	13	6	13	3	12	1	18
AGTTGGATGTCGTTAC	alt_3129_upstream	79	22	90	86	24	82	33	77	26	78
GGGTGCTGGCCCGCAA	alt_3129_upstream	130	35	173	150	38	168	41	113	41	124
ATTGCCTTGCATGCTG	alt_3129_upstream	87	30	104	94	24	108	21	93	31	87
ATCTTTAACTAATATG	alt_3129_upstream	83	21	97	89	13	89	25	73	23	73
CACCGTGAAGTCGTGG	alt_3129_upstream	75	37	77	83	26	81	39	85	30	71
CGTTACTTTATAGCTC	ref_3129_upstream	78	36	108	75	27	89	35	99	49	64
CCTCCGGAAGCTTATA	alt_3129_upstream	24	20	55	53	23	29	15	51	15	22
TGACGTTGCCATCACT	alt_3129_upstream	76	27	88	82	19	63	20	73	22	83
GGACACGATACAGTGT	alt_3129_upstream	173	48	216	227	41	191	60	169	48	147
TTTAGAGACTGTCCGG	alt_3129_upstream	72	13	65	75	32	63	19	66	27	58
AGGAACGCAAGCAGGC	alt_3129_upstream	192	57	318	280	83	230	75	234	82	274
CCACGAGTTCCGGACA	alt_3129_upstream	60	37	80	61	22	70	35	77	30	59
AGCACCCGAGGGAAAT	alt_3129_upstream	231	56	275	214	54	208	54	240	53	221
CTGATCCTACCTCGCA	alt_3129_upstream	37	25	52	51	9	41	21	56	25	28
AAACGACTACTTTGAT	alt_3129_upstream	168	37	193	171	49	160	44	100	45	148
TACGAACTGCTTTCTC	alt_3129_upstream	190	57	176	185	45	145	51	145	43	124
CGATCATGAGTAAGTT	alt_3129_upstream	247	88	363	295	89	276	114	260	127	249
TTAAATGGTAATTTGA	alt_3129_upstream	65	27	86	100	19	59	20	67	26	64
AAAGACGCGATCTTCA	alt_3129_upstream	1133	288	1446	1295	283	1165	319	1096	347	1050
ATGAGTTTATTGATGG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTAACAAAATGCG	alt_3129_upstream	121	36	156	135	43	115	44	126	31	113
CGAATCGAATCGTGGT	alt_3129_upstream	183	57	250	239	65	178	70	207	71	192
AGTTAATCAATGCTTG	alt_3129_upstream	72	16	94	68	22	55	12	70	25	51
ATGCTAAATTGGGTAA	alt_3129_upstream	38	13	36	40	13	27	12	26	13	27
GATGGACTATCCAGTG	alt_3129_upstream	11	8	13	8	0	14	1	6	5	8
GCAGGTTGTCATATAC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTTAAACCCCCTATCT	alt_3129_upstream	58	16	63	60	18	54	22	49	16	50
GCCGGGCATCATTTCC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CACACGGTAATATGTG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCGGATTTTGTTA	alt_3129_upstream	167	67	228	175	56	174	63	184	60	167
GGGGATGCCGAGCACT	alt_3129_upstream	17	2	23	13	2	23	4	12	4	10
TAATCTTATATTGCGC	alt_3129_upstream	189	50	214	166	45	143	54	164	49	161
CCTTATTACTCACGGC	alt_3129_upstream	115	29	153	138	39	105	32	94	46	97
GTGTCATCAATTTGGT	alt_3129_upstream	12	4	19	15	5	13	2	8	4	7
CAGTCAAGCTTATTGT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCGCTCCTTGTGG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
AGTTACACCGGTTGTT	alt_3129_upstream	59	11	56	42	16	42	23	51	12	57
TAAGGACGGGTTAACC	alt_3129_upstream	97	29	133	105	32	79	32	82	38	103
GGGAGCTATCTCTATT	alt_3129_upstream	47	12	56	50	17	66	10	51	13	47
CTCAATTAGGGGTCCG	alt_3129_upstream	0	0	1	0	0	0	0	0	0	0
CGCGTCTTGTTTCGTG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGTGGTAATTTGC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTCCATTAGGGGTCCG	alt_3129_upstream	1409	405	1780	1543	441	1392	504	1363	416	1265
ACTTTTATATGTGGCG	alt_3129_upstream	77	23	105	98	26	63	24	94	25	66
TTCACTAAGCTGGCCG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCTGTGGAATCGT	alt_3129_upstream	6	4	17	9	1	11	3	6	2	16
CTGCTCGCTCCAAGGG	alt_3129_upstream	181	33	206	187	41	170	43	143	48	140
ATAATATTTGTCTGTT	alt_3129_upstream	186	56	221	230	55	202	65	187	64	183
TAGGGGCGACTGCGTT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAATGTTGCGCCA	alt_3129_upstream	106	36	112	107	37	84	22	83	28	81
TTCCGCAGTTCGTATC	alt_3129_upstream	136	35	165	140	38	133	48	140	53	123
TTACACGTAGCACGTA	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
AATTCTCTAAATACTG	alt_3129_upstream	77	23	101	72	17	77	20	64	30	82
CCTGAAGCTACCCTTT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCAGACACTCCCT	alt_3129_upstream	5	25	9	4	23	4	33	5	39	8
AGGCTCAAGCCAATGG	alt_3129_upstream	193	64	196	186	58	171	65	177	65	152
ACCCGGATCACCGGAC	ref_3129_upstream	50	10	34	44	18	41	15	44	13	38
TCGCCTGCAATTACAA	alt_3129_upstream	37	18	44	49	11	32	25	29	11	32
TGTCGGTGGACAGAGA	alt_3129_upstream	150	60	235	195	63	189	49	171	64	140
TTATTTTTTACCCCAG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TAATGAATATTTTCTG	alt_3129_upstream	228	63	251	235	66	229	58	200	68	207
TGTTCTGGACTACATG	alt_3129_upstream	70	30	87	111	25	66	37	79	45	100
CCCTCAGGTATCTAAG	alt_3129_upstream	349	117	419	392	92	367	102	347	113	263
AGGTTACATATACCGT	alt_3129_upstream	40	11	65	61	18	30	25	42	10	34
CCGCAGTCCCTTCTCG	alt_3129_upstream	84	38	115	95	45	85	41	89	30	75
CTGCAGCAGTTGCAGT	alt_3129_upstream	24	7	47	23	7	35	9	31	12	29
GAGCTAAGCGGTCATC	alt_3129_upstream	309	93	346	366	89	319	88	303	103	282
CAGCGTTGACTTGTCG	alt_3129_upstream	61	21	87	82	17	58	18	56	11	56
CGTCCATGGGTTCACT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGTATCGCCATCAACT	alt_3129_upstream	95	28	142	99	32	98	27	86	29	76
CTGTTTTGTCAGATTC	alt_3129_upstream	107	32	122	110	35	86	36	95	37	70
TGTGGCTACCGTCATG	alt_3129_upstream	191	64	231	214	63	185	51	162	76	198
GCTGTTGGGATGCCCG	alt_3129_upstream	11	1	6	2	0	2	1	7	5	5
GGCGTCTTGCCAGCGG	alt_3129_upstream	90	25	118	110	36	107	31	106	33	75
TTTTTTGTCGAAGTTA	alt_3129_upstream	32	11	44	36	14	39	23	29	12	27
ACCCCTTACTCGGTGC	alt_3129_upstream	27	9	29	22	9	19	19	34	12	20
TAAGTTTTTATAGTAC	alt_3129_upstream	182	67	182	150	57	155	72	170	69	161
CCACGTTTTAGCCTTT	alt_3129_upstream	128	50	189	139	52	126	75	123	63	101
CAGCTCCATTTCTTGC	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGTTGACGTCAGG	alt_3129_upstream	54	47	65	64	28	47	39	49	29	43
ACCAATGGTATGAATA	alt_3129_upstream	47	19	60	49	10	54	16	48	12	45
TGGAGTTTTCGAGGTT	alt_3129_upstream	337	116	456	367	107	365	130	298	138	273
TCATGCGTGTCCGATT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATCGAATTACATGGTG	alt_3129_upstream	190	67	255	213	68	212	65	185	61	175
CACCTCGCTTTGGCAT	alt_3129_upstream	184	83	211	215	77	166	93	183	93	166
GAATTGCCTGGCAAGG	alt_3129_upstream	56	12	47	48	19	42	15	53	14	45
GTTGCTTAGGAGCGCA	alt_3129_upstream	723	233	894	814	249	737	260	723	238	711
TGAGCACCTCAATTAT	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGCCCACTGGATA	alt_3129_upstream	428	155	603	508	179	433	163	453	155	389
CTTACGGTAGAGCAGC	alt_3129_upstream	44	21	56	52	17	47	14	55	16	47
CAACGGTTTCTTTTCG	alt_3129_upstream	0	0	0	0	0	0	0	0	0	0
ACATATTGTCGTGTCC	alt_3129_upstream	355	88	371	286	76	323	95	300	93	235
TACGGGCCAATCCGTT	alt_3129_upstream	23	16	58	46	22	35	22	39	15	44
CCGGCCCTCATCCTAA	alt_3129_upstream	17	7	21	22	8	22	8	19	6	16
TGTTTCTCGTAATAGA	ref_3332_reverse	60	87	74	51	82	50	84	57	91	44
AAAATCTTATCTCCTC	ref_3332_reverse	22	16	20	17	21	14	24	21	23	14
ATTGCGTTTATCTAAC	ref_3332_reverse	12	10	20	9	13	4	18	11	22	16
ACCCCTTCGCCCTCGT	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTCTGTGTATTGT	ref_3332_reverse	89	99	90	74	91	60	89	77	97	68
GTCCGCGTCTAACGTA	ref_3332_reverse	25	25	20	21	20	19	11	23	25	12
CTAATTCGCGTATTGC	ref_3332_reverse	22	17	23	16	18	15	16	20	16	21
CGCTTATCCGTGTTGG	ref_3332_reverse	88	105	70	76	80	61	103	63	92	78
ATACCGGTAGAGCCAG	ref_3332_reverse	2	3	2	0	0	2	3	0	2	1
TTAGCCCGGTATGAGA	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCATGTAACAGGC	ref_3332_reverse	16	16	21	24	21	14	19	18	35	6
GACGGCAATTTTTTAC	ref_3332_reverse	9	4	4	7	3	5	5	9	8	6
CGCTCTGAGGTAGCCG	ref_3332_reverse	10	19	15	9	12	11	17	7	19	15
ATAAGTCATTCCTGTT	ref_3332_reverse	42	65	49	57	72	51	91	42	57	54
ACCAATATAAACCTCT	ref_3332_reverse	47	88	79	50	69	48	64	38	74	62
CAGTCAATTTTCGAGG	ref_3332_reverse	91	118	105	91	107	75	93	69	106	68
ATAGGTTATAACATCT	ref_3332_reverse	53	101	67	57	74	52	72	37	103	46
TTCTTTCACTAGCACG	ref_3332_reverse	5	12	9	10	18	7	9	3	18	7
TCGCTAAGTGGAGCAC	ref_3332_reverse	108	144	123	89	138	87	146	106	156	91
CGGGCGTTCGTGGGCC	ref_3332_reverse	16	28	9	9	13	13	19	11	22	9
CAATCTATGTTGGTTA	ref_3332_reverse	30	55	63	35	45	37	52	37	76	28
GGGATCGCGTTTCGGG	ref_3332_reverse	39	58	59	51	46	40	53	36	70	32
TTCAGAGTACCATTAG	ref_3332_reverse	10	10	9	9	12	13	26	13	18	5
CGCACCTCCGATCGTA	ref_3332_reverse	40	87	68	62	104	59	121	43	114	50
AAAAAGGCGTACCTCC	ref_3332_reverse	45	65	41	34	69	38	67	31	63	38
ATGCCCTAACACCATC	ref_3332_reverse	86	112	84	63	89	65	86	83	97	69
AGGGTCCCTCCAAGGA	ref_3332_reverse	58	72	72	50	76	44	65	48	77	59
CGGGGAGTAGCAGTGC	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTAGTTAGATTCT	ref_3332_reverse	93	109	121	89	138	100	102	96	129	99
ATGCAATCCACGCCAT	ref_3332_reverse	20	19	37	20	28	21	17	21	27	31
GGGCTCGATCTAGTTT	ref_3332_reverse	26	38	49	22	43	31	47	29	49	24
CGGGTTATTTGGCGAC	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
TAAACAAAGTTTCTAA	ref_3332_reverse	34	54	45	55	47	40	55	30	59	38
TACGAACCTTTCTGCC	ref_3332_reverse	121	166	142	95	99	113	152	107	141	102
TCGTCAATGACCTTAC	ref_3332_reverse	17	21	14	8	10	9	17	13	25	10
ACTTAACCAGATTGAT	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGTTTTGTTTCGA	ref_3332_reverse	52	37	58	39	34	40	53	34	61	36
GCGCAAACTCTCCGTC	ref_3332_reverse	10	56	8	14	59	10	55	8	55	6
TCAACCGGGATCGTTA	ref_3332_reverse	4	5	12	7	8	2	21	11	9	5
ATGTACTCGAGCACGA	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCGTGACTTCTAC	ref_3332_reverse	29	55	52	34	49	35	45	38	57	43
AGTAGGTATGAATACT	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
GATTCTATCATTACAG	ref_3332_reverse	104	117	124	88	106	83	118	94	109	89
GAAGGCAACTGGCTCT	ref_3332_reverse	17	33	28	15	18	17	26	23	23	18
GGTGCGTCTTTCGTTT	ref_3332_reverse	61	87	106	62	86	68	104	61	91	60
TAAAGCATCTGTTTAT	ref_3332_reverse	102	127	77	78	122	102	145	93	140	62
AAGCAATCCAATCTAA	ref_3332_reverse	26	31	34	29	33	27	32	23	24	19
GTGGATCACCTTTAAA	ref_3332_reverse	11	29	21	16	26	21	27	15	36	18
GTAGCTTGTTAAAGTA	ref_3332_reverse	125	128	149	142	147	111	155	111	161	118
GGGCGTAGCTTGGTCT	ref_3332_reverse	13	28	14	11	35	5	17	13	18	5
GCGAATATTTCTCCCG	ref_3332_reverse	0	1	0	4	1	2	0	0	1	2
ACTCTCACCTTAATAG	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCTTTGACCCTTT	ref_3332_reverse	25	26	30	32	19	24	18	22	27	18
CTGCCGATGACCATTG	ref_3332_reverse	10	9	9	6	13	7	26	2	15	5
ATGGATTTGTTTCAAC	ref_3332_reverse	49	63	69	57	61	49	73	61	82	72
AAGTATCAGAATGCCA	ref_3332_reverse	23	22	21	16	27	18	24	18	36	22
GTGATTATCGCAATCA	ref_3332_reverse	17	18	20	10	29	5	19	10	17	19
ATGTTTCTGGCCGGAT	ref_3332_reverse	11	17	21	20	13	11	23	14	14	15
AGAAGCATGGGCCCTG	ref_3332_reverse	9	9	8	4	8	15	4	8	9	4
GGTGTAGTCATATTTA	ref_3332_reverse	30	42	45	31	44	47	50	33	61	28
TCACCGCTCGTCCACT	ref_3332_reverse	34	163	47	39	185	28	189	27	199	25
CTCACAAACATTGGTT	ref_3332_reverse	6	14	6	4	10	9	14	9	19	9
AAAGGGATGCTAGGTT	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGAACCTAGTGGT	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTCTGCCATTATA	ref_3332_reverse	8	25	20	18	20	12	17	15	26	13
TGTCTTTGAACAATTA	ref_3332_reverse	71	118	108	74	99	90	114	62	116	68
CGCCTTTGAGCTTGGT	ref_3332_reverse	13	6	14	11	19	15	19	11	13	11
TCCACGCCCCAAATAT	ref_3332_reverse	19	40	23	15	30	22	27	7	50	20
TTCCCGGCGACCTCAG	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAATCATTGATGA	ref_3332_reverse	29	37	35	31	30	32	37	33	31	24
TAGGGGAAATCCGATT	ref_3332_reverse	8	18	13	12	19	9	11	7	15	9
AGGCTTTTCACTGACA	ref_3332_reverse	83	86	98	66	101	97	120	70	101	71
GCTTTAACGTCTTGGG	ref_3332_reverse	81	141	102	88	150	73	169	87	147	82
TCCTGTCTCTATCTAA	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGTCATCAAGGCC	ref_3332_reverse	77	80	87	66	114	62	96	61	114	68
TAACCTATTGCTGTCA	ref_3332_reverse	18	22	12	18	20	20	24	16	26	12
AGATGGTTTCTCAATC	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCTGTGCGTTCG	ref_3332_reverse	34	34	36	42	51	40	44	50	46	38
CTCCCCAGGACAAACA	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
GAATGTCCTCTAACCC	ref_3332_reverse	2	4	2	0	3	0	5	0	0	2
GGTTCTTTGGTGACAG	ref_3332_reverse	487	604	521	491	622	412	605	440	656	456
TTGCTTTACAGCGTGT	ref_3332_reverse	39	63	44	41	54	33	57	45	56	35
TCTTCTTTGTCTGTTT	ref_3332_reverse	9	5	24	18	7	7	18	8	8	10
GATTTGCAGGTATTCT	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
GGACCTCGCAACTTCT	ref_3332_reverse	30	61	51	42	51	44	49	26	40	38
GCAATTCCGTTGAGCA	ref_3332_reverse	14	26	29	25	20	14	24	18	19	18
CGGTAATCTATCCCGC	ref_3332_reverse	22	17	46	24	26	25	25	29	38	23
TTTCGCTCCGTCTAGA	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCATAACAGACAC	ref_3332_reverse	350	356	366	290	327	309	358	327	358	320
GGTTGATGAGTTAACA	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTTGTGTTTTAG	ref_3332_reverse	75	92	96	80	88	71	113	61	85	59
TCGTGAACCCTTACGA	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
AGTCGACAACTCTGAA	ref_3332_reverse	19	25	27	22	23	25	34	16	18	18
CATTCAGTATATTCTG	ref_3332_reverse	21	23	12	18	13	17	26	11	27	10
CCAGAGCTGCACCCCT	ref_3332_reverse	12	26	19	9	20	10	13	14	20	11
CGTACTCAAGCCATTC	ref_3332_reverse	0	0	0	0	0	0	0	0	0	0
ATTATTACGCATAGCT	ref_3332_reverse	51	55	62	44	65	55	101	55	72	44
GTAACCTTATCAGTAC	ref_6019_new	20	38	27	20	30	22	54	26	40	16
TCCAATTGATCGCAGG	ref_6019_new	10	17	5	8	19	5	15	5	20	6
ACACTCCAGCTTATAC	ref_6019_new	2	42	3	1	49	1	44	4	42	1
GGAACAACTTATGTTA	ref_6019_new	16	24	33	17	30	18	20	17	25	16
AGTGTAATTCCTGACC	ref_6019_new	20	63	39	39	45	36	52	27	60	28
TTGCAATCATATGGAG	ref_6019_new	27	50	20	22	35	34	37	33	48	30
ATCCCCTATCCCGGGC	ref_6019_new	8	32	9	13	26	4	24	8	34	4
TCCCATCTTACCGTAG	ref_6019_new	68	151	87	70	160	55	165	80	165	52
GTTGCCCTCTTAGTTG	ref_6019_new	34	51	48	49	53	40	45	31	53	44
TTGTCCGGCCTTTCGA	ref_6019_new	42	62	57	46	45	39	46	27	65	23
GGGCGTTAGGTACCTC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TTGCAACAGTATTGCC	ref_6019_new	15	13	16	15	13	10	22	8	9	5
GGTTCATGCGTTTCCG	ref_6019_new	275	344	322	310	334	249	365	234	372	198
ATCGGCCACTGTTGTT	ref_6019_new	33	69	45	31	56	29	60	31	46	28
GCCCCCTTGCATGAAT	ref_6019_new	9	12	7	11	9	20	13	8	24	10
TTTAGTGGGCTCTTTA	ref_6019_new	11	30	16	27	38	13	33	21	34	11
AGAATTTCGTGTTAAT	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TGTCCCGATCCGGTTC	ref_6019_new	53	78	59	45	77	43	63	57	78	42
TGATATAGTCGCTTGA	ref_6019_new	20	41	33	19	46	19	31	9	40	30
GTGTCGTAAGCTTAGT	ref_6019_new	279	349	314	282	371	256	379	236	396	254
CACCCATCACTCTCGC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TGCAGTATTGTCACAA	ref_6019_new	50	78	89	49	100	60	78	60	83	35
TTATAGGTCCACTCGT	ref_6019_new	0	0	0	0	0	0	0	0	0	0
ATGGTATTAGCCTCTT	ref_6019_new	11	12	17	6	16	9	22	12	10	8
TATATGGTTGCTCTCC	ref_6019_new	34	48	67	43	34	34	66	27	49	37
TCTGTCCACCAATGCA	ref_6019_new	27	44	27	26	42	27	40	31	46	28
TGTGGCGATAGCCGAC	ref_6019_new	29	30	37	38	31	40	40	29	44	30
AATCGACCCGCAAAAG	ref_6019_new	0	0	0	0	0	0	0	0	0	0
CATCGTTAGCATCAAT	ref_6019_new	25	36	36	28	38	32	33	43	49	22
AAGTCGTCTCGGTCGC	ref_6019_new	34	88	32	19	72	27	56	25	68	32
GCGGTCTCCACTCTAT	ref_6019_new	22	22	16	9	29	8	16	12	10	13
ATAGACCAAGATATGT	ref_6019_new	130	231	168	165	199	136	184	162	184	147
TGTGTGTTTTGTGCGT	ref_6019_new	129	259	215	145	269	170	270	141	261	157
CCGCACCTGTCCAGGC	ref_6019_new	31	44	33	30	35	28	48	28	46	28
TTTCATAATTTTTCCA	ref_6019_new	9	6	10	16	6	9	10	8	15	11
GTTGGTAACGTATGAC	ref_6019_new	31	31	33	40	49	31	51	36	60	26
CTGGGTAACTGGCATC	ref_6019_new	1	2	6	5	4	1	4	4	3	3
GGCTCATCAACGTATT	ref_6019_new	18	41	24	31	45	17	41	17	39	12
TTCTTTTACGGGGCGC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
GGTGTCTAGATCTCCG	ref_6019_new	8	7	15	12	18	6	11	9	15	10
ACCTTGCCAGGTTGGT	ref_6019_new	2	5	0	5	6	4	3	2	4	2
TTATGCCAGCGGAACC	ref_6019_new	30	16	23	18	33	25	21	22	22	12
AAGTGCGGAAGGTATT	ref_6019_new	10	15	11	6	10	9	8	7	15	7
GGCACATCCCCGCCAC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
GACGCTTGCTTATACT	ref_6019_new	86	116	108	104	106	94	136	70	126	84
AATTTCAGTCATAAAC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TTTCGGTCAATACGTT	ref_6019_new	0	1	0	2	3	2	1	0	1	0
GTAGGTTGTACCGCGG	ref_6019_new	26	49	40	26	56	42	38	36	57	41
CTTAACTTGAAAGGTA	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TCGTCTTGGTGACATC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TGATCGATATCGAAAC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
GTCAAACCTCTATTGG	ref_6019_new	18	21	17	23	28	16	23	17	29	15
TTGATAGACTTCTTTT	ref_6019_new	0	0	1	0	0	0	0	0	1	0
GCTCTTTGTTGGGTCT	ref_6019_new	4	1	2	3	4	1	4	0	4	3
ATGTTGCTCCAAACCG	ref_6019_new	33	47	55	52	57	44	30	47	47	23
CGCGCGCCCCGATAAA	ref_6019_new	28	75	81	64	52	45	80	48	82	52
CCCGATAAGCACATTA	ref_6019_new	26	37	45	17	30	20	33	26	35	33
TGAACGCGCGGATGGG	ref_6019_new	80	93	95	97	84	82	105	81	113	87
AAGTGTAGCCGTACAA	ref_6019_new	14	34	23	26	29	10	34	14	29	15
TTTAAGTACCTACGTA	ref_6019_new	42	59	40	48	46	38	48	35	58	37
TTAAGTCGATTTGTTA	ref_6019_new	48	52	43	49	57	38	58	53	73	45
GTACGGGCGGACAGAT	ref_6019_new	40	24	29	38	38	30	36	27	45	30
CTCGTCAGTGAAAACG	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TCCCTCCTGATGTGTT	ref_6019_new	29	52	31	43	54	39	47	45	66	46
TCTCAGTGTTTGTGTT	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TACTGACTCGTAATTC	ref_6019_new	21	29	21	17	12	16	31	16	39	21
GGTTTTTTACATTACA	ref_6019_new	29	37	22	25	37	16	35	24	34	28
ACGTTTTTATACATGC	ref_6019_new	144	161	153	141	207	143	179	160	160	139
CTCATGGATACATGAA	ref_6019_new	85	85	83	65	121	89	105	85	103	84
GAGCGTTTGTAAGTTT	ref_6019_new	52	78	62	69	79	54	117	68	89	47
ATGGTTCGGGGACTGG	ref_6019_new	24	22	29	30	36	23	23	16	26	22
GTGTAGTAAGCTTAGT	ref_6019_new	1	0	0	0	0	0	0	0	0	0
GCTTGGCGACAACAAA	ref_6019_new	3	2	2	1	2	5	7	2	3	1
TAGAGAAATAGCCAGT	ref_6019_new	0	0	0	0	0	0	0	0	0	0
ACGTCGGGGTGGCCTA	ref_6019_new	46	60	66	38	43	50	71	51	64	42
CTGGGGTACCGCGTAA	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TGCGCGCGACCCAATG	ref_6019_new	153	233	205	176	169	163	235	137	236	144
CAGATTATAATAAGGG	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TCTTAACAACGCAGTG	ref_6019_new	0	0	0	0	0	0	0	0	0	0
ACCTCTGTATAGATTT	ref_6019_new	48	58	42	53	58	39	77	60	68	36
TGCCTAGCGCTCTACA	ref_6019_new	7	17	5	11	15	12	11	7	17	6
ACACACTCTTTTCCAT	ref_6019_new	18	33	23	21	23	10	21	10	24	19
GGTAGGCCGATCGTCT	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TATGCTCTCGATACAT	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TAGGGCGCTAGCTGAG	ref_6019_new	9	11	23	16	15	16	22	12	25	8
TATTCCTGTAATTACA	ref_6019_new	0	0	0	0	0	0	0	0	0	0
AGGACCTACAGACATA	ref_6019_new	58	71	79	56	69	60	87	47	78	34
CTTCTTATGCACCTAT	ref_6019_new	10	15	22	14	7	13	18	11	15	7
AGTAGATCGGAGCGTC	ref_6019_new	0	0	0	0	0	0	0	0	0	0
GCGCACCCCTTTTGAA	ref_6019_new	47	54	55	39	70	31	81	52	63	56
AGTGTTAAATGTGTAT	ref_6019_new	0	0	0	0	0	0	1	0	1	0
AAAGCGTATCCTCCCA	ref_6019_new	0	0	0	0	0	0	0	0	0	0
TGGCGATTCCTCATTT	ref_6019_new	53	68	67	46	80	48	81	65	71	40
CCTGCAGGAGCCGTGT	ref_6019_new	12	7	12	3	6	5	6	12	7	8
GTATATAGTGTAAATT	ref_6019_new	0	0	0	0	0	0	0	0	0	0
CAGCGGGCGATACGGT	ref_6019_new	22	31	36	34	44	25	24	30	24	32
GTTAATTGGTCTTTGA	ref_5764_new	0	0	0	0	0	0	0	0	0	0
AGATCTATTCGTATGC	ref_5764_new	33	74	51	54	65	32	58	34	68	35
TTGTCGCCATTGGTAT	ref_5764_new	0	0	0	0	0	0	0	0	0	0
GTTTGTCTTTCCTCGC	ref_5764_new	0	0	0	0	0	0	0	0	0	0
TAGGTTAACTTCAAGT	ref_5764_new	8	13	9	8	22	3	15	10	16	13
CCTCGTAACTGAAGCC	ref_5764_new	54	63	73	47	81	42	72	40	84	55
GGGCAGCTCACTGTTC	ref_5764_new	0	3	2	4	7	5	1	6	6	3
ACGTAAGAGAGCACGC	ref_5764_new	15	26	23	13	18	22	24	14	23	19
GCTCCCTCTGCTGGCG	ref_5764_new	92	245	116	97	237	93	246	97	280	98
CGATTTTTTGCCTTAG	ref_5764_new	0	0	0	0	0	0	0	0	0	0
TGTCTTTCAGGCTTCT	ref_5764_new	58	60	76	52	79	66	78	59	85	55
GCTCGTCTAATTTCTA	ref_5764_new	11	24	15	10	6	16	20	6	19	9
ATATTCACTGCCACAA	ref_5764_new	68	117	91	75	80	55	106	62	80	51
CAACACACTCTAAGCT	ref_5764_new	164	319	190	186	294	156	289	193	283	188
GGGTCCTTCTGGTCTT	ref_5764_new	67	88	82	72	83	57	95	67	99	60
GACCATGTGCGCGAAC	ref_5764_new	0	0	0	0	0	0	0	0	0	0
TCATTGTCCGCGCGGA	ref_5764_new	12	26	17	12	19	17	28	12	27	5
TACCCCGACTCCAGAG	ref_5764_new	6	9	10	8	20	9	24	8	12	3
CATACCTAGTATAACC	ref_5764_new	25	39	20	31	37	19	35	22	38	14
TTACTACTGTCTTATA	ref_5764_new	5	10	7	5	16	2	11	7	17	10
TGATAGCGCTTTCTCG	ref_5764_new	50	80	55	44	80	32	61	44	67	47
ATTTTATTGTAGTACG	ref_5764_new	0	4	0	1	3	0	1	1	2	1
TTACTGCAATCACAGT	ref_5764_new	25	32	21	23	29	28	20	17	21	15
GTTTCCGATAGCGATG	ref_5764_new	6	6	5	6	10	5	5	4	5	4
GCTCTTGGGGTATACC	ref_5764_new	19	22	15	12	21	14	34	12	17	8
ATAATGGGCTCGGAGA	ref_5764_new	0	0	0	0	0	0	0	0	0	0
CTAAAGCCGGCATCGA	ref_5764_new	55	100	84	89	90	45	104	60	88	64
TGGTACGGCGTCCATA	ref_5764_new	79	115	102	81	109	75	133	94	125	63
TTCAATGCGGAAGAGG	ref_5764_new	18	26	9	21	31	20	29	9	25	18
ATGGGCTTCGCGGAAC	ref_5764_new	35	22	23	18	30	19	21	20	20	14
TGAGTTCCAAGTACCA	ref_5764_new	35	60	37	48	44	38	48	34	66	37
CCAGCTGTCGACGCTT	ref_5764_new	108	220	147	130	192	106	201	119	225	113
GTACGGTGAATCATAC	ref_5764_new	8	19	13	10	16	6	20	9	18	5
TAATCGGACCCGTAGC	ref_5764_new	17	18	18	23	21	16	24	17	29	13
GAGATAGGTATCGAAA	ref_5764_new	0	0	0	0	0	0	0	0	0	0
CTCGGGGTATGGGGAT	ref_5764_new	10	19	9	12	18	8	13	5	19	7
GTATGTCCAATTTTGC	ref_5764_new	38	61	90	55	64	41	67	57	74	46
GCCGGTTTACTCTTAC	ref_5764_new	53	64	62	45	72	57	77	44	75	54
GGGGTTCCGTTCTCCT	ref_5764_new	20	33	29	19	28	15	31	19	27	20
AACTCACTACGCCGAT	ref_5764_new	48	65	78	52	84	52	71	45	94	61
TTTGAAGACTCACTTA	ref_5764_new	19	27	20	16	25	15	31	12	35	15
GAGATTGGACGTTCTG	ref_5764_new	41	69	61	55	64	42	82	47	90	51
ACCTGTGTAACATTTT	ref_5764_new	15	29	16	13	18	18	34	11	26	7
AATCCTCTGTAACGCT	ref_5764_new	33	55	41	42	56	40	50	35	44	25
TCCTAGGCTTTAAATT	ref_5764_new	46	58	46	37	72	35	92	25	57	25
GGGATTCTCCCGTAAC	ref_5764_new	24	31	22	16	32	19	19	22	28	15
GGGTTTATCCAATCGA	ref_5764_new	31	50	49	15	43	31	37	23	51	21
ATGCTGGGCGAGGATC	ref_5764_new	13	34	31	32	42	17	41	30	48	26
CTCTGATCATCTTTAC	ref_5764_new	12	10	5	6	11	9	8	8	16	8
CGCCTGGTGAGGGGGG	ref_5764_new	7	19	8	11	10	11	14	13	11	11
AGTGGAGATCTCCACC	ref_5764_new	29	67	46	49	51	31	79	18	69	40
CATTGGTACACTAGTA	ref_5764_new	48	62	56	40	64	43	77	43	63	41
GATGTGCGAATAACGT	ref_5764_new	10	11	9	4	13	10	9	7	19	5
CCTGATACCACACTTT	ref_5764_new	11	38	18	25	46	14	63	23	41	31
CCGGCATTATGTAGCT	ref_5764_new	0	0	0	0	0	0	0	0	0	0
TGTAATGTTGCCACAC	ref_5764_new	26	40	38	25	41	28	40	22	57	22
AAAGTTGGTACGATTA	ref_5764_new	10	12	23	7	12	10	16	18	21	15
TACGTACTGCAGTTCG	ref_5764_new	11	17	13	18	17	14	23	11	35	19
CACCCATGTTAGGCTA	ref_5764_new	25	34	24	25	46	21	44	20	52	18
TATTTCCGTGTTTCGA	ref_5764_new	0	0	0	0	0	0	0	0	0	0
CGGACTTTCCTCAACA	ref_5764_new	0	0	0	0	0	0	0	0	0	0
TCGTATACAGTGTTCT	ref_5764_new	0	1	2	2	4	6	2	3	4	1
CGAAAGCTTTGTTTTC	ref_5764_new	218	251	247	202	243	220	259	199	238	176
GCGTCCTACTTCTCTC	ref_5764_new	20	39	30	21	28	22	45	21	50	23
TCCAACGGGATCTTAA	ref_5764_new	40	52	39	36	72	41	44	34	63	36
AAGTGTGTACTCACGG	ref_5764_new	12	43	14	7	28	14	40	13	46	5
AGATGTACTCTAGGCG	ref_5764_new	0	0	0	0	0	0	0	0	0	0
GAGAATCATCATTCGT	ref_5764_new	3	6	9	10	13	3	23	12	16	8
TCTAACGTTGGCCGAC	ref_5764_new	9	17	4	6	27	3	15	3	23	8
GAACACACTGTCGTCA	ref_5764_new	36	51	36	35	53	38	46	24	46	34
TTAAGTCGCAGATGGT	ref_5764_new	40	42	44	39	36	34	44	37	46	26
CACATACCATTGTGAG	ref_5764_new	57	93	57	45	77	52	77	41	87	43
ATTAGTTACTTATGGG	ref_5764_new	48	52	51	39	73	38	77	31	84	45
GAGTTCGGTGAACCAG	ref_5764_new	0	0	0	0	0	0	0	0	0	0
TAACTGGGCGAACGGA	ref_5764_new	6	3	3	2	8	6	6	1	12	6
GCGTTATAACTAAAGG	ref_5764_new	14	36	28	21	37	20	32	19	30	18
CCCAGTTTATTCAATA	ref_5764_new	9	30	14	15	19	14	17	11	28	13
ACTCCTCCATACCGGT	ref_5764_new	14	10	9	10	24	13	14	9	14	6
CCTGACTACTATTAAC	alt_904_RC	0	0	0	0	0	0	0	0	0	0
TTTTAATGCCCTGGCT	alt_904_RC	0	0	0	0	0	0	0	0	0	0
CTCGTTTTGAGGGCTT	alt_904_RC	59	9	52	55	13	58	16	54	12	49
AATACATTCGCCTGCG	alt_904_RC	66	14	66	60	18	60	24	60	18	58
GCTCTAGGTGTGGCAC	alt_904_RC	30	5	47	38	8	32	10	26	5	34
CATCGGCACACGACCC	alt_904_RC	12	21	5	14	8	9	13	10	16	15
ATCTTCATTTAGGAAC	alt_904_RC	0	0	0	0	0	0	0	0	0	0
GTGGATAGAATTATGG	alt_904_RC	372	83	473	406	103	397	100	418	87	335
GTGACCAATTTTTGTA	alt_904_RC	102	30	87	103	27	85	30	94	28	86
TTCCGTGTGCTACATA	alt_904_RC	0	0	0	0	0	0	0	0	0	0
AATGAGCGATCTGCTC	alt_904_RC	308	82	396	329	95	311	97	337	113	274
CTCCTGGCTCGTCTGG	alt_904_RC	117	72	160	133	63	118	60	97	65	98
CACCTATCCGGGGGTG	alt_904_RC	48	9	40	40	4	34	10	38	13	37
GCAGCCTTGGGTGACT	alt_904_RC	518	127	626	570	129	497	152	511	142	524
TCTACCTTGGTTAACA	alt_904_RC	454	153	621	524	179	437	182	521	198	447
GTGACTCATTGTTCGT	alt_904_RC	0	0	0	0	0	0	0	0	0	0
AGGTGCAAATCTTTTT	alt_904_RC	223	83	299	257	84	272	55	222	64	217
CTGAGATTTTCTCGTC	alt_904_RC	492	117	563	486	138	452	117	418	135	394
ATGATCCCTGGGTACT	alt_904_RC	6	5	12	7	6	6	3	14	5	13
CATCCGTTATGCAATG	alt_904_RC	20	11	40	34	10	24	16	32	6	23
CTTTTAGGGCTCAACA	alt_904_RC	0	0	0	1	0	0	0	0	1	0
GGTGTTCACGGCGAAT	alt_904_RC	0	0	0	0	0	0	0	0	0	0
GTACTAGAACCTTCCT	alt_904_RC	163	67	164	147	56	137	62	133	71	132
AGCTTTTGGGAAGTAT	alt_904_RC	27	5	42	30	8	20	11	28	11	25
TGCCAGACCACAAACG	alt_904_RC	0	0	0	0	0	0	0	0	0	0
CGTGAACTGCATTAGG	alt_904_RC	185	40	211	202	35	177	58	164	46	167
TGGCTAGTTCCGATTT	alt_904_RC	151	57	190	160	37	161	68	145	26	143
ATGACCTGACACCAGC	alt_904_RC	273	73	291	263	70	231	70	253	61	221
ACACAAGAGGTAGTCA	alt_904_RC	133	46	180	139	54	128	42	136	25	157
TGAAGAATATGTGAGT	alt_904_RC	256	59	283	264	57	217	67	212	67	216
TCCGTGGTGTCGACTT	alt_904_RC	101	52	126	110	41	86	63	110	40	79
TCGTACCCTGAATTTT	alt_904_RC	57	20	72	64	11	44	13	48	26	60
CACTCGGTGGATTTTG	alt_904_RC	96	30	91	100	29	102	32	75	29	78
CCTACGGACGTGTAAT	alt_904_RC	0	0	0	0	0	0	0	0	0	0
TTATTTCAACGCTGTC	alt_904_RC	318	118	324	265	110	274	125	271	90	236
CTGCGCCCATTCCCTA	alt_904_RC	298	79	324	309	87	265	70	258	84	278
CTACTAGCGTAAAGTG	alt_904_RC	217	93	207	223	87	163	97	194	94	191
CTGGTCTTGTTCTTCG	alt_904_RC	358	88	384	332	116	335	100	333	115	310
CGTCCATCGCATTTGA	alt_904_RC	0	0	0	0	0	0	0	0	0	0
CACATATTGGCCCAAC	alt_904_RC	211	78	303	287	113	192	83	264	85	208
TCGGTCTCTCCTAGGG	alt_904_RC	208	102	299	239	107	209	94	242	91	214
GTCTATAGGACTACCG	alt_904_RC	139	35	165	134	29	117	32	102	35	108
TGATTCATATTTACCG	alt_904_RC	45	6	36	49	8	24	7	32	14	33
GTCACGGTCCAGTCTC	alt_904_RC	0	0	0	0	0	0	0	0	0	0
ACTTCTCTGTCGCTTA	alt_904_RC	162	49	197	185	50	156	58	156	47	129
ACAGTTTCTGTCCGGG	alt_904_RC	562	193	595	549	193	493	187	550	174	486
ATTTTCCACCATATAG	alt_904_RC	113	31	138	120	34	110	32	97	33	107
CATTTGCACTTCCAAC	alt_904_RC	663	165	738	650	148	619	187	594	196	519
CAACGCATGACTGATG	alt_904_RC	107	72	105	116	84	81	84	98	74	111
CATTTAGAGTTTTGCC	alt_904_RC	560	149	663	565	155	469	170	545	188	439
GCCACTGAAGTCTAGA	alt_904_RC	0	0	0	0	0	0	0	0	0	0
CTACTCTTGATAGTCT	alt_904_RC	0	0	0	0	0	0	0	0	0	0
GCTATTACCGCGAAGA	alt_904_RC	0	0	0	0	0	0	0	0	0	0
GACTTGCATGATCTCG	alt_904_RC	271	63	323	247	75	270	69	264	62	223
ACTGAGTCAATACATT	alt_904_RC	155	39	181	152	38	127	57	146	39	148
GCCGGGTCCTAAGGTT	alt_904_RC	711	199	919	723	191	619	186	643	221	631
TCGTGAAACTCTATGT	alt_904_RC	281	82	354	274	89	331	92	276	81	297
TGGTTGTCCTACTGCG	alt_904_RC	126	34	163	124	27	118	39	117	30	110
CATCAGATAAACTGAC	alt_2283_reverse	147	137	165	162	98	117	131	103	124	101
TATACCGGTCCTCTCA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TAACCTGCTTCTTCTT	alt_2283_reverse	35	17	22	24	20	21	17	28	13	23
GCACAACTATTGGTGC	alt_2283_reverse	78	68	91	86	97	61	56	80	56	55
TTCCAAGTCTTTGTTG	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTGCCATGTCTTA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GACAGTTAGACTGATA	alt_2283_reverse	29	29	31	19	32	27	27	23	33	19
TTTCAACTGCTATCTC	alt_2283_reverse	47	42	51	60	48	28	58	38	58	45
CCTTCGATGGGTCAGT	alt_2283_reverse	10	14	12	15	13	13	23	15	19	18
TGAACGCGATTTCGGC	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTTGTTCTACCAA	alt_2283_reverse	36	36	64	29	35	34	29	26	29	28
TACATTGTATCTTCTT	alt_2283_reverse	16	8	18	23	10	15	11	14	12	17
GACCCGGATTCCTTTA	alt_2283_reverse	46	42	53	40	48	47	41	33	53	39
CATCTGTTACCTGGCG	alt_2283_reverse	24	14	20	25	18	24	18	18	22	19
TTTCGGACGCTTTTTT	alt_2283_reverse	51	52	71	48	45	67	37	31	37	52
CTATATCGGTCTTGCT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGTCTCTTTCTG	alt_2283_reverse	4	4	11	4	3	3	2	1	1	5
GCCCGCGTATGGGTGG	alt_2283_reverse	46	49	43	49	37	39	69	33	49	42
CCCTCGGAGTCCTAAA	alt_2283_reverse	10	8	5	8	11	12	5	7	12	7
GCTACTGGATTATGCG	alt_2283_reverse	64	59	66	49	41	49	49	47	63	48
TCACAAAATAATATTT	alt_2283_reverse	35	29	42	30	19	29	24	21	36	38
TCTTCATCATCGATCG	alt_2283_reverse	158	119	184	159	123	168	151	155	136	137
CCTAACACGGGATGTG	alt_2283_reverse	15	27	16	17	26	11	26	11	20	6
ATCAACTGGTTTAATA	alt_2283_reverse	0	0	5	1	1	1	2	0	1	2
GAATATGCAATTCTCT	alt_2283_reverse	25	18	21	45	23	28	16	31	21	21
ATCGTGTCTGTAGGTG	alt_2283_reverse	24	35	27	24	31	25	20	31	30	24
GACGTTCTATTCGTGT	alt_2283_reverse	14	15	24	15	10	10	10	11	14	15
AGTCCGTCGGCCGTCA	alt_2283_reverse	33	21	32	22	27	29	28	20	29	20
GTGAAGAACTTTGCTT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TGTAAATAGCGCTCGT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCTCGCGTTTTTC	alt_2283_reverse	13	6	16	6	9	16	9	8	15	18
TGACACGCACAAGTGC	alt_2283_reverse	2	1	1	0	1	0	1	2	6	2
TCTCCTAACTTTCGTG	alt_2283_reverse	12	22	24	23	15	17	18	15	25	15
CTCGTTCGAGCGATAT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCGAGATAATTTC	alt_2283_reverse	8	12	12	6	9	18	10	6	11	9
TGTAAGCCTGGCCATA	alt_2283_reverse	3	2	2	1	0	1	0	1	1	1
GTTATCTAGTACTTTC	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGGGGGGAATCGC	alt_2283_reverse	56	42	50	51	45	43	22	39	46	47
GACACAGGGCGTAAGT	alt_2283_reverse	5	5	5	7	7	2	4	4	2	3
TCCCTAAATATGGCTG	alt_2283_reverse	14	8	16	14	15	14	17	21	17	18
CGGGTTTCTTGCGCGC	alt_2283_reverse	3	8	4	2	12	4	6	3	3	4
GGCCGGTGCTGGGTTC	alt_2283_reverse	163	140	176	144	141	123	146	173	152	145
AGTGGTATATAAGACC	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GCAGATCGTGCGACGG	alt_2283_reverse	7	7	3	11	6	14	3	4	5	5
AATTGCGGGAACCTGT	alt_2283_reverse	69	92	118	133	60	84	84	80	91	85
GATAGAGTTTTGCGTA	alt_2283_reverse	46	36	41	45	30	37	38	37	45	42
TACGATTACTTTAACA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CGATAATTTTCCTGAG	alt_2283_reverse	7	5	8	3	7	8	7	6	2	7
TTTATTAGGCGGTTTT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CACAAAGTAGCTTTCG	alt_2283_reverse	16	24	21	23	23	20	20	16	16	11
TGGGAACGTAGCCAGT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
ACATACGTCTTTCCCA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTGTGCCCGAAT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
AGAGATTAGAGTATCT	alt_2283_reverse	70	74	98	73	72	79	67	62	66	74
ATCCAAGTAAAGGGAA	alt_2283_reverse	82	80	106	90	62	71	79	66	88	61
TTGAGGGTAGAAGTCT	alt_2283_reverse	42	42	60	34	51	37	52	54	40	47
TTTATGTCTCTTGTAT	alt_2283_reverse	75	78	100	79	73	57	76	58	74	64
GTTGTATGGCTGTGTC	alt_2283_reverse	40	25	46	35	44	39	35	31	38	35
CTCGCCTTCGTCGTGC	alt_2283_reverse	15	20	15	13	11	12	23	16	25	6
TTTCACTAGGCCCGTC	alt_2283_reverse	23	15	18	27	15	15	23	25	15	12
AACGGGAACTGCGTAC	alt_2283_reverse	23	14	23	18	14	20	13	22	18	19
CCGATTTCTTTTTTCA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GATCACCACCTTCAGT	alt_2283_reverse	3	2	5	3	8	9	7	1	4	2
ACCGCGGATTAATAGA	alt_2283_reverse	32	25	37	40	30	48	34	36	40	31
CCATCGGACAGGATCT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCGTCTTACCGTA	alt_2283_reverse	64	91	78	58	89	68	110	62	94	68
TCAAGACGGACCTCTA	alt_2283_reverse	33	20	26	18	19	17	18	28	32	33
TACGTTTAGCATTAAA	alt_2283_reverse	11	14	24	16	13	18	18	18	17	18
ACGACTGACACTCCTT	alt_2283_reverse	19	39	5	17	42	14	33	13	37	13
GCACCAGCTGTCTTAT	alt_2283_reverse	11	13	17	12	11	7	10	6	14	10
TTTGGCTTAGTATGCA	alt_2283_reverse	16	26	28	23	25	22	19	23	25	26
AGGATTTCTCTCTCTC	alt_2283_reverse	7	9	11	7	6	5	4	9	5	10
GACTGGAAACCCATAT	alt_2283_reverse	3	1	8	7	10	4	3	7	8	9
AGCGTGAGGACCTGAC	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CGACTCTACCTTAATA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCTAGGTGGTATG	alt_2283_reverse	22	25	18	27	16	14	15	15	21	9
AGCTACGTTTTCTTCG	alt_2283_reverse	105	74	135	94	90	89	91	76	99	80
TAGTGGCAACCGTTTG	alt_2283_reverse	32	32	56	43	26	28	44	30	30	28
ATTACATAATCCGGCT	alt_2283_reverse	24	43	51	39	26	41	43	39	41	48
ATGTGTGGCCTCCATA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CTAAAATTAAATGATG	alt_2283_reverse	43	47	60	67	52	45	49	50	66	59
GGCGGGGTTAATACAA	alt_2283_reverse	28	17	24	24	27	17	27	25	24	17
TTTGTTCTTTTGATGG	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GAATCCGCTGACTATG	alt_2283_reverse	9	3	1	8	0	2	2	7	2	4
GGCCTGATTTTTTAGG	alt_2283_reverse	17	17	27	21	22	17	25	16	18	22
TCTTAGCGTTTGTTCT	alt_2283_reverse	10	17	20	12	12	16	21	14	13	7
TATTGGTTCACAACGT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCGTTGTACTATG	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
AACACCTATATAGGGT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTATCATGGCCTC	alt_2283_reverse	183	165	274	211	199	187	174	202	168	147
TGATGCCAATGCGCAG	alt_2283_reverse	44	22	35	46	27	34	32	32	15	42
GTTCGGACGCCCTGAT	alt_2283_reverse	12	11	21	6	19	16	12	19	15	15
GCCTAGTCTACTTTCC	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCGTGATCATTGT	alt_2283_reverse	24	18	18	15	25	22	14	15	23	15
ATCACTGTCGCTTGAT	alt_2283_reverse	34	22	15	19	16	25	18	21	23	22
TATTCTCCTTCCTTCG	alt_2283_reverse	5	3	5	4	3	6	3	2	1	6
GTTTCGTAAGGATTGT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGATACGTTCTGG	alt_2283_reverse	94	101	121	91	95	69	114	98	86	106
TTACCGTTCTAACTCA	alt_2283_reverse	216	214	287	215	205	195	214	207	249	188
ACTCATTCGGAACCTG	alt_2283_reverse	49	42	68	37	37	42	39	40	40	38
TAGACTAAATAGCATG	alt_2283_reverse	33	22	26	29	19	48	38	26	36	28
CTCTCGTTCAGCATCG	alt_2283_reverse	38	24	44	40	32	40	38	29	35	30
TATATCAGAAAAGCTG	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
ACTGAGCGTTTTCGCT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CATTACATTATTGAAA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGAGATTCCCCTT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CATCATCTCCAGGTAT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
TATGTAAGTTATAACG	alt_2283_reverse	49	69	62	54	56	57	70	33	64	57
GATGTACTAACTGTCC	alt_2283_reverse	38	35	37	24	30	36	33	47	24	25
CCACTACTGGCCTCCT	alt_2283_reverse	22	16	27	24	19	18	22	17	19	23
CTGTGTTCATCGATTA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTCATTCTGTCTC	alt_2283_reverse	22	15	26	9	19	11	14	22	19	19
ATTCAATCTGTCCTTT	alt_2283_reverse	17	11	19	14	22	20	14	22	15	22
TCAAGGTATATAACTG	alt_2283_reverse	20	21	43	30	40	26	30	19	30	28
TATCGCATACCTTTTC	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTTAGGAATCACGGGA	alt_2283_reverse	34	28	61	48	37	40	27	33	43	40
TCATATCTTGATACGA	alt_2283_reverse	23	14	24	30	18	28	19	32	19	29
CGCTGCCAACTGTCGG	alt_2283_reverse	19	21	20	13	21	6	17	16	23	14
TTCATTCTCTCCTGAA	alt_2283_reverse	7	5	3	5	6	2	14	9	3	3
TCGCTGTATGGGTTAG	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTGACTGTTAAAA	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
AACCGACGCGGAGGCT	alt_2283_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTACAAGTTCGTA	alt_2283_reverse	17	33	17	35	22	26	26	29	29	35
GAGCAACGTGAGGACA	alt_2283_reverse	3	2	6	3	6	12	4	3	1	3
CTTGTGAGTTTAATCG	alt_2283_reverse	40	34	37	43	26	35	29	25	36	39
TTGGCAGTCAAGGAAG	ref_6053_new	5	8	0	1	5	1	3	1	5	1
CTCGTTCCCCCTCATG	ref_6053_new	20	15	18	13	24	10	21	7	18	7
ATAGTCTTTGGCGTTC	ref_6053_new	49	73	39	40	90	42	81	39	72	41
CTCTTTACCCAGGTAG	ref_6053_new	25	38	29	21	45	15	58	30	37	21
TAAGGTTCGGTTGCTC	ref_6053_new	0	0	0	0	0	0	0	0	0	0
TAAGTCAAGTTTACGT	ref_6053_new	43	82	58	33	96	48	80	30	99	39
TTATCCCATCAATTTG	ref_6053_new	12	13	9	8	13	14	25	9	16	6
ATACGCTCTCCGTCTT	ref_6053_new	0	0	0	0	0	0	0	0	0	0
TTATTTTCCGTCGCAC	ref_6053_new	19	43	25	14	45	7	34	23	36	14
TTATGATTCGACTGAA	ref_6053_new	12	7	11	10	24	7	13	17	11	7
ATTTGTATGTAAATAA	ref_6053_new	12	38	28	17	31	15	44	17	36	17
GACTTCAAGTAAGAGA	ref_6053_new	4	7	4	3	2	4	8	1	5	0
GTGTCTTCCGCGGCTC	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CTGGTTTCACAGTACT	ref_6053_new	0	0	0	0	0	0	0	0	0	0
ATTGTAACTCAGTCCC	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CCCTTATTTCTCTTAT	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CGTCTAATGCCGCGAC	ref_6053_new	104	164	96	107	155	97	153	86	169	76
TTGCTCCCGCTTATGG	ref_6053_new	5	24	7	5	40	6	38	8	40	6
CGGTCCCGTAGACAGT	ref_6053_new	13	20	11	8	18	5	25	5	22	8
GAGCCGCCCAACCACG	ref_6053_new	0	0	0	0	0	0	0	0	0	0
GCCATGTCTCTAATTT	ref_6053_new	3	6	1	2	6	1	3	1	1	0
CAATATGGGAGCGTTT	ref_6053_new	7	7	9	14	8	8	13	3	13	5
GGAGCTTACTTCCTCC	ref_6053_new	0	0	0	0	0	0	0	0	0	0
TATTCTTAATGGGACA	ref_6053_new	0	0	0	0	0	0	0	0	0	0
GCGCCCGCTATCGACG	ref_6053_new	5	7	3	7	6	2	3	1	8	2
TAACCGCTATTTGGTA	ref_6053_new	26	33	22	22	23	12	16	14	18	17
TCGGCGGTTCCTCGCC	ref_6053_new	0	0	0	0	0	0	0	0	0	0
AAACCGCCTTGTTCCA	ref_6053_new	6	7	6	1	7	6	9	2	7	5
TTAGGCCTATAAGTTC	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CGTAGTCGTCAATGTA	ref_6053_new	0	0	0	0	0	0	0	0	0	0
TCGTTATCTTGCCATT	ref_6053_new	8	14	10	9	18	10	7	5	13	8
TGGAGTTGTTCGACTG	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CAACTTCCGCTGCTGT	ref_6053_new	6	4	5	5	14	6	7	4	4	7
TTTGCTGAAACTGGTT	ref_6053_new	0	0	0	0	0	0	0	0	0	0
TCTGTTATTATCGCTG	ref_6053_new	0	4	6	1	5	0	8	1	6	2
CCTCGGTTGTTCAGGT	ref_6053_new	60	92	69	81	95	40	108	62	121	57
CTTTAGCACGGAAGTA	ref_6053_new	0	0	0	0	0	0	0	0	0	0
TACGTTCCGCTAACAT	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CCAGGCAAACATTAAA	ref_6053_new	0	0	0	0	0	0	0	0	0	0
ATTTCCGTTTTCTATT	ref_6053_new	0	0	0	0	0	0	0	0	0	0
TCCTTCTACTTAGCAT	ref_6053_new	13	39	10	16	43	11	33	13	37	14
GCATGTTCCATATTTA	ref_6053_new	12	17	13	3	20	8	17	8	18	22
ATGTAGGTCGACAGAA	ref_6053_new	0	0	0	0	0	0	0	0	0	0
ATACCTAGAAAAGATT	ref_6053_new	20	19	20	6	35	13	17	9	29	9
TAAAATCGTGGGACTT	ref_6053_new	6	23	17	10	13	13	22	15	26	10
TCTACGGGCCATGTGA	ref_6053_new	18	21	19	17	24	18	29	19	23	16
CTCGCTATCCGTTTGG	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CATACTCTGCAGCGTC	ref_6053_new	14	24	14	10	15	10	14	8	14	7
AGTTGCTGGACAGTTT	ref_6053_new	15	32	15	9	33	18	39	13	46	19
CATTGTCCGTTGTCGC	ref_6053_new	26	45	34	26	61	19	62	24	45	24
CAATACGATTTTTTGC	ref_6053_new	0	0	0	0	0	0	0	0	0	0
CTACGGGCACTGATTC	ref_6053_new	17	42	26	15	32	21	46	18	34	17
TCCCTGTCTTGTATCA	ref_378_upstream	19	37	28	21	33	24	43	14	36	16
GCTCACTAGATATATA	ref_378_upstream	65	87	76	63	93	36	83	57	91	34
TTCTGTTTCGAGAACC	ref_378_upstream	63	69	54	47	74	61	99	51	86	43
TAATTAATAGTGCGAT	ref_378_upstream	66	71	77	58	86	78	78	45	88	44
CGTGGGCGAACATCGT	ref_378_upstream	14	27	31	16	35	16	33	16	20	17
TTCTGCCAATGCTAAT	alt_378_upstream	17	12	10	13	19	11	18	16	14	11
AACGAGATCTACTTGC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GACCGCGTGGGCGAAA	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGACTAAAGGTAC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTTTTTTTTTTTG	ref_378_upstream	0	0	0	0	1	0	0	0	0	0
GCGATTATTCTGAATT	ref_378_upstream	42	58	65	48	62	57	60	48	74	48
GGCATTCACTCATCTT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGAGCCGTGATAT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CGTCATTTAAATTTGC	ref_378_upstream	14	26	19	10	28	12	35	20	40	22
ATATTGTCGCCAGGCT	ref_378_upstream	31	28	42	34	42	25	34	31	49	40
CCGCCTCAGCGCCTTC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGCTTTTTGCCAT	ref_378_upstream	90	126	99	95	122	84	143	95	137	83
CGCTGCGACTTTGGGG	ref_378_upstream	5	19	12	15	15	9	33	9	17	10
TAGATGCTCCTCACAG	ref_378_upstream	10	5	2	6	10	4	12	5	7	10
TAGTCGCCTTTGTCCA	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
ATAACTCATAGTTTAG	ref_378_upstream	47	70	41	48	58	41	68	44	93	49
TCGGCCGCCCTGTGAT	ref_378_upstream	27	33	31	29	34	24	24	20	33	14
CTCCTTGTTCTATCTG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TACTCTTTATCGCCCG	ref_378_upstream	25	39	32	33	33	16	26	29	39	32
CCCTGCATATGCCTAG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTGCCACTGGTCG	ref_378_upstream	3	1	2	0	4	3	4	1	2	1
GTTGCTATCGCACACA	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTGTAAACCAGCT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTTTTTTTTTGCT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
AGACTGACCGCAGTAC	ref_378_upstream	11	17	13	14	24	12	29	13	24	17
CTGGTTCGCCGCTGTT	ref_378_upstream	93	99	107	92	107	85	109	81	105	97
CAAAGCGGTGAGTAGC	ref_378_upstream	25	18	24	17	15	13	29	7	25	11
AACGCGGCGTTTGTTT	ref_378_upstream	17	20	15	15	15	16	19	17	22	14
GTACAAGGCCGAATGG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
AGTACTGTGGCTGCTA	ref_378_upstream	21	38	33	23	42	29	32	29	48	20
TGGTCGGGTTGACGGC	alt_378_upstream	7	10	19	18	12	18	16	15	16	6
TCCATGTCTAGGCCGT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GCTGAATAGCTGGCAC	ref_378_upstream	17	23	13	11	20	9	17	18	16	16
CCCGGTGTTGTGTGCG	ref_378_upstream	10	20	8	15	18	11	21	6	14	0
AATGTGTTTGCTTTCG	ref_378_upstream	22	23	16	11	26	20	27	10	21	10
TGTAGAATTTGGTCTC	ref_378_upstream	10	21	12	14	13	5	14	13	20	7
TTCATCCTTATTCTTG	ref_378_upstream	8	2	3	3	5	3	1	7	6	1
TGGGTATCACATTTAT	ref_378_upstream	2	9	4	2	1	2	0	0	3	1
CCCGAATGAGGTGATT	ref_378_upstream	5	4	2	2	4	0	7	3	11	2
GCGGCTTGGGTTCCTC	ref_378_upstream	7	14	5	5	9	12	13	11	7	9
ACCATAACCTCGGTGC	ref_378_upstream	10	10	8	8	33	6	13	5	20	8
GCTGGTATTGAGGGGG	ref_378_upstream	13	14	12	7	11	17	20	8	22	8
AGCACCATGCTAGATC	ref_378_upstream	3	16	8	13	13	5	13	13	8	4
TCGTGTATCGTAAATC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TTCCACGGTAATAGAT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCAAATTCGAGGC	ref_378_upstream	17	22	9	25	16	18	23	24	24	7
CCATAATCCACTGTGC	ref_378_upstream	15	17	13	3	16	5	21	9	21	8
GGTTACAGTTCCTCAC	ref_378_upstream	53	84	79	67	94	64	82	55	95	50
AGTGTTAGGTTGCGAT	ref_378_upstream	170	186	237	186	212	168	204	177	223	168
TAAATGTCCGCTTCAG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTTTGAACAGAA	ref_378_upstream	10	17	10	6	15	9	15	10	11	6
TACATGTATTGGGGTA	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CATACTCATTTAGCAG	ref_378_upstream	24	24	24	18	22	15	24	21	39	19
GTCATCCGGGATTTTC	ref_378_upstream	2	20	7	4	15	7	15	7	14	3
CTGCGGTTCATGGCGG	ref_378_upstream	18	18	22	34	23	27	18	15	42	14
TGGCATCTATTCTGCG	ref_378_upstream	32	49	53	40	69	35	57	37	59	27
TATCTGTGTAGATTCA	ref_378_upstream	2	8	6	12	6	5	5	8	4	4
GGAGTCGCTTACACTC	ref_378_upstream	0	7	7	3	4	3	9	3	9	4
CAGTTAAAGTGTTTGC	ref_378_upstream	11	11	9	6	15	5	3	10	8	2
CACGCCTAACACCGAT	ref_378_upstream	65	77	80	55	76	68	74	59	115	59
CGTCCATATTTTACTC	ref_378_upstream	1	1	2	4	2	1	5	1	5	1
CGGGACTTGGTTCACC	ref_378_upstream	36	23	16	11	28	17	25	17	31	16
TAGCCGCTTCTTCCAT	ref_378_upstream	15	17	19	13	17	15	12	12	22	8
TACGTGGTCCTTCGGC	ref_378_upstream	23	14	20	12	19	13	15	24	19	12
CCGTGGGGAGGTGTTC	ref_378_upstream	3	6	10	4	9	6	8	2	0	4
ACCCCCCCTCAAAAGA	ref_378_upstream	35	66	35	29	95	38	86	23	72	33
GTGATTCTCTAAATTG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTTGCTCGTCTCG	ref_378_upstream	36	45	35	37	45	38	53	27	50	29
GATTGAACGCCCTCCT	ref_378_upstream	67	97	80	74	104	61	80	42	103	63
ATTTTTCGCATCGTAC	ref_378_upstream	56	86	72	67	86	57	74	61	92	38
TGTGTAGAGAGTACTG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTCATGGCTTCAT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
AGTATCTATGGTACTT	ref_378_upstream	17	38	20	23	36	30	29	17	37	15
CAGCGATCGCCATGCG	ref_378_upstream	42	68	63	53	79	49	79	36	83	36
TGATCCATGTACGATA	ref_378_upstream	13	18	14	12	15	13	16	7	21	11
GATGCTGCGCCGTTGG	ref_378_upstream	4	6	2	5	1	7	4	1	7	1
ATAGAGCCTCGGGGCA	ref_378_upstream	17	22	21	28	30	15	30	22	32	30
GACGAGGAGGTTTCCG	ref_378_upstream	33	31	31	38	54	37	37	32	39	38
GCCGCCATCAATGCGG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTCCTTTGGGCCT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GCCTATTTCCATCGAT	ref_378_upstream	0	7	3	5	5	3	7	3	7	5
CGATGAGTGTTCGTGC	ref_378_upstream	20	24	18	24	23	28	37	24	29	19
AAGACTCATCTCTCTG	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GAATAAGGGGGAAAGC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTGTCTCTTGGGC	ref_378_upstream	51	77	77	46	74	40	83	50	79	46
ACCCCGATCGGTTTCC	ref_378_upstream	39	48	47	34	43	27	56	40	51	34
GGGCCCATCTCGCCTT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGATTATTGAGGA	ref_378_upstream	11	14	9	14	17	13	16	9	13	14
TCTCCTTTGTGCTATT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GTGGACACTCAGGAAA	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GATCTGAATAGTTATG	ref_378_upstream	10	22	20	18	22	18	17	13	21	8
TCTAGACAGTTTAAAC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGCGCAGCGTGGC	ref_378_upstream	14	61	24	17	77	23	77	10	73	21
GTCGTTGCCTTCTTGC	ref_378_upstream	10	15	9	4	6	2	10	8	5	8
CAGCGGCCTGCGTGCG	ref_378_upstream	10	81	19	15	91	21	66	14	88	13
GTTTTGTACGTTATCT	ref_378_upstream	17	13	18	16	18	10	17	4	16	7
TCTCGGCCGGTCCAGG	ref_378_upstream	5	10	6	9	5	9	9	5	9	4
GTAGGTCTCCGTTTTT	ref_378_upstream	14	4	12	7	4	6	7	6	9	3
TATGAGTGCAACGTTT	ref_378_upstream	8	21	26	11	23	15	14	22	29	10
TTCCTGTGGGGCTCGG	ref_378_upstream	12	25	9	15	14	8	7	5	12	15
GTTCAAATCGCAGGCC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
ATCTAGTGGTATACGA	ref_378_upstream	2	7	6	4	0	1	7	3	2	4
TGGCTGCATGGTCATG	ref_378_upstream	12	16	14	15	17	9	19	12	11	15
GCCGCGCTTTTAGGGA	ref_378_upstream	18	34	34	16	36	18	49	23	35	18
TAACTTAAAACACAAT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CATATTGCACCATGGT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CGTCAGCGCGCGAAGA	ref_378_upstream	206	283	232	189	257	188	262	191	283	165
TCTTTGTTTTATGATC	ref_378_upstream	33	25	42	25	28	17	35	35	47	19
TTCCTTTTTTTTTTGC	ref_378_upstream	95	91	116	77	145	99	127	77	146	83
CTTTTCGATCGCATTC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCCCTTCTTGTCG	ref_378_upstream	37	65	53	50	74	39	71	33	78	46
CAGTAACTATGTATGA	ref_378_upstream	19	33	21	12	31	16	33	16	32	18
AAGGCACCTAAGCAGG	ref_378_upstream	10	27	11	14	18	10	21	7	16	6
TGTATTGTCACTGGTC	ref_378_upstream	20	43	25	25	32	20	55	30	45	24
AACACTGGCTTATTAC	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
TGATTTCCAGCCTATA	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CAACGAATAGACGCGA	ref_378_upstream	45	45	55	47	58	58	46	34	59	41
GCATAAAGTTATTATA	ref_378_upstream	15	10	6	9	18	9	9	7	12	15
GGATTCCTTGCGCGCA	ref_378_upstream	1	5	7	1	4	0	3	5	1	3
TATCGGGGGGTTTGTC	ref_378_upstream	10	11	14	10	18	12	19	14	21	5
AGTGTTAGGTTGAGAT	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCAGTCGTGAGGA	ref_378_upstream	0	0	0	0	0	0	0	0	0	0
CATCTATTACCCATAA	ref_378_upstream	17	25	27	15	17	16	20	17	24	12
AACCGTTAACTTTTTT	ref_5336_upstream	55	52	74	64	72	70	61	47	75	52
TAGAATTTTTTAATCT	ref_5336_upstream	84	93	112	86	103	88	110	61	114	84
CTCTAACTGTGCCCTC	ref_5336_upstream	3	9	7	4	7	9	12	4	7	4
GGTTATTGGCTTCATG	ref_5336_upstream	58	52	93	85	82	62	84	55	79	60
TACATGCCAGAGGCTC	ref_5336_upstream	6	12	10	7	16	19	11	13	16	7
TTGCGACTTGCATCGA	ref_5336_upstream	136	184	153	118	141	133	157	115	154	125
TGTTTGGATTCATACC	ref_5336_upstream	64	96	90	67	91	76	105	87	81	78
TCATCCTGGTTACTAT	ref_5336_upstream	37	45	43	23	48	19	35	31	44	32
CCTTTTGATCCGAGCT	ref_5336_upstream	8	18	7	6	25	7	16	12	29	9
TTGTAATATCGGACAG	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCCCTATGCGCAG	ref_5336_upstream	4	5	3	6	6	10	7	6	6	5
TCCTGATTTAAATCTT	ref_5336_upstream	57	46	76	38	67	52	61	56	57	51
CCTCGTCTCTGGACTT	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TATCCAACTTTTTTAA	ref_5336_upstream	2	1	6	0	2	1	4	2	5	1
GGGCGTTTCGGCTTCT	ref_5336_upstream	7	12	11	5	6	5	13	7	8	6
CCAGCTCGTTTCCTTA	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGGCTGAACCCGT	ref_5336_upstream	10	14	16	12	11	3	16	6	13	12
AACCGGATATTTCTGC	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
CTATGATACTGGAAGT	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATGGCATCGGTA	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TGTAATGGGGAGGCTC	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCCTTGCAAGCCG	ref_5336_upstream	12	14	18	15	25	15	36	14	30	15
TCCAAGTCTTTCCGGC	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCAACGCATCCCT	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTGGCCAACACAA	ref_5336_upstream	62	71	90	61	73	49	74	72	74	51
CAGGTTAGTCAAATGG	ref_5336_upstream	25	24	40	31	44	40	38	31	35	37
TCCTTAGTATTTCGCT	ref_5336_upstream	9	23	15	11	20	8	15	17	23	11
TTATCCTCCGAGTTCC	ref_5336_upstream	4	6	9	2	2	3	8	4	8	3
AGATAAACAACATTTG	ref_5336_upstream	37	37	44	38	33	26	38	42	33	33
GATCAACGTCGACCCG	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAACGATGGGCCT	ref_5336_upstream	28	20	50	28	38	29	42	36	30	28
TTTTACCGTTGTCATC	ref_5336_upstream	3	4	2	2	2	2	3	2	3	1
GGGTATTCAAATATAA	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTATTCTCGCCGTACT	ref_5336_upstream	19	26	27	22	33	23	25	19	35	10
GCTAACCTTTCTAGCC	ref_5336_upstream	66	63	74	52	71	60	63	57	67	62
CGCTAATTTTATGGGG	ref_5336_upstream	49	61	64	53	53	45	59	61	68	64
CTATTTCTACTTTCGT	ref_5336_upstream	14	8	14	16	13	8	19	17	18	11
GAAGATTATCTTCGTT	ref_5336_upstream	29	26	42	28	33	26	30	23	39	34
GACCTATGTCCCGACT	ref_5336_upstream	14	13	10	5	16	7	12	13	13	6
CACCTCCCGATTTTAG	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTGTTTGTTTTCA	ref_5336_upstream	31	47	44	32	29	28	30	26	38	18
CGTCCGTGGCCGCACA	ref_5336_upstream	19	33	28	44	27	37	46	27	31	24
CCTATTTAGCAGGACT	ref_5336_upstream	3	5	7	3	5	4	9	1	0	7
TGCTAACCCACATCCT	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGGACCCTCCCC	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTGCACCATACAACCG	ref_5336_upstream	34	50	54	32	61	27	50	29	61	51
GTCCATAAGCCTCGCC	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
AAAAGATTTTGACTAC	ref_5336_upstream	24	21	35	19	20	21	25	23	22	23
AATTTTCCCGTCCGGT	ref_5336_upstream	7	11	7	7	6	5	10	5	7	2
TTGGTCCAAGGATCAA	ref_5336_upstream	18	27	29	30	39	22	27	23	40	17
AATTAAAAGTGTTCCC	ref_5336_upstream	18	37	29	24	22	27	29	27	25	29
TTTAATGGCTCAGGCC	ref_5336_upstream	4	6	11	9	11	13	11	8	2	7
TTCCAGTCATAATGCA	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TTGACTCTGTATGTTT	ref_5336_upstream	23	9	17	12	20	15	20	15	20	13
ACTAACACATCATCTG	ref_5336_upstream	15	17	18	12	26	14	15	15	20	13
CCAGAGTTAACATTTA	ref_5336_upstream	7	44	9	6	32	6	29	6	36	10
GTCAACACCCTACGGG	ref_5336_upstream	12	17	16	12	20	13	13	21	20	15
TAAAAACGGGGTACCT	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGCCGGGGTGCCC	ref_5336_upstream	7	14	15	10	12	11	14	6	22	5
TCAGTAGTGACTCTGT	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
GCTATTGCACGCTCGA	ref_5336_upstream	7	8	3	3	7	1	4	2	12	3
CCCGTTCTTTGTAGCG	ref_5336_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGAACACTTTGTC	ref_5336_upstream	17	18	18	15	37	11	18	18	26	17
TGTAGCATCACAACGG	alt_862_RC	243	145	334	329	151	252	159	277	164	234
GCCTCTTAGAACCTGG	alt_862_RC	3	1	6	5	3	2	0	5	2	3
CTGATCGTAGCAGTAG	alt_862_RC	0	0	0	0	0	0	0	0	0	0
AGATTATTTCTCGCAC	alt_862_RC	358	151	359	356	146	326	191	313	138	292
AGTACCTCACACGCGG	alt_862_RC	386	197	390	320	200	321	196	310	211	312
CAGAATTTTTGAAAGT	alt_862_RC	4	4	5	5	2	6	1	2	5	3
TCAACTTCTGATATGG	alt_862_RC	100	55	132	83	68	82	67	89	55	75
AATGAAGCAATCATTT	alt_862_RC	108	44	112	107	40	94	50	97	48	103
CCTTCTTTAGGTCCCT	alt_862_RC	20	9	8	10	10	13	8	20	10	7
TTGAATCGGTTATTCG	alt_862_RC	0	0	0	0	0	0	0	0	0	0
TTTGGGATGCTGGTGC	ref_862_RC	86	59	98	76	76	81	61	89	74	77
CTCTATCATATTCGTA	alt_862_RC	143	80	194	149	77	144	91	112	92	146
GTTATGCTCCAGTTAA	alt_862_RC	0	0	2	5	1	1	0	0	2	3
GTACGCCGCCGTACCC	alt_862_RC	0	0	0	0	0	0	0	0	0	0
AGGGGAAGGAGGAAGC	alt_862_RC	26	15	23	36	9	19	10	30	13	15
GATTGTAATTAGGGTC	alt_862_RC	0	0	0	0	0	0	0	0	0	0
GCTATAGGGTACTGCG	alt_862_RC	59	32	69	60	29	50	32	65	32	45
GGGATGAAGCTAAGCC	alt_862_RC	56	21	85	41	28	44	22	46	35	65
AACTTCTACGAACTTG	alt_862_RC	24	14	25	17	8	25	8	19	11	11
TTGCATGGTTCCGCAA	alt_862_RC	19	10	14	22	9	17	5	12	7	17
GTGGGGACGTCGCTCT	alt_862_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCGTCCGCGTCC	alt_862_RC	0	0	0	0	0	0	0	0	0	0
CTGAAGTCACCTTAGT	alt_862_RC	0	0	0	0	0	0	0	0	0	0
CTTGGCATATGTGTTA	alt_862_RC	0	0	0	0	0	0	0	0	0	0
GCCTCACTTTTAACTT	alt_862_RC	26	16	22	26	18	28	17	23	14	26
TTGAATCAACAGGCCT	alt_862_RC	58	37	69	67	46	44	37	53	44	46
TTTTCACTACTTTCTT	alt_862_RC	0	0	0	0	0	0	0	0	0	0
ACGGCTTTTCAGATGC	alt_862_RC	57	21	76	72	20	61	24	45	26	42
AACGCCAGTCTCTGGT	alt_862_RC	74	43	103	69	46	59	40	73	41	75
ACGGTCAAGGTGAACA	alt_862_RC	0	0	0	0	0	0	0	0	0	0
TCTTGCCCTACCTTCT	ref_862_RC	80	64	128	115	99	75	110	90	81	68
TCCTTCACCAGAGACC	alt_862_RC	61	32	84	71	28	62	45	55	42	55
GTGTCGACCTTAACCC	alt_862_RC	97	89	111	105	76	87	99	117	79	85
GTTTAGGATTTTGATC	alt_862_RC	16	5	18	11	10	19	11	15	10	14
TCCACATAGCGACTCT	alt_862_RC	23	6	22	16	9	10	8	12	11	7
GTGTTCACACTCTTTA	alt_862_RC	16	10	19	16	12	8	15	12	17	12
GGAGTAAAATACCGTT	alt_862_RC	254	122	330	285	158	240	167	256	146	248
TGTTCCATTTGCACCT	alt_862_RC	39	21	46	47	21	46	24	30	26	44
TAGTGTGTTCACCATA	alt_862_RC	1	2	2	1	0	4	1	1	1	0
TTGGAATGGTTCATGA	alt_862_RC	139	80	187	150	80	157	108	158	73	130
TCACGACTGCGCCAAG	alt_862_RC	71	37	70	58	24	69	40	63	40	55
GCCTACAATCCACAAG	alt_862_RC	60	43	96	80	46	67	54	71	53	63
CGGGTTTCTCCTCTGT	alt_862_RC	36	17	54	49	17	34	16	36	16	35
GGCCGTTTAGTGTACA	alt_862_RC	0	0	0	0	0	0	0	0	0	0
CTAGGTTTTGAAACTC	ref_862_RC	150	94	208	175	98	170	95	161	104	168
GTCCTGGAATTCATAC	alt_862_RC	108	65	102	104	84	106	49	112	57	85
GCAGGTAACACTGAAT	alt_862_RC	72	31	89	80	47	59	63	59	58	67
TAGTAAAATTGCATAT	alt_862_RC	45	33	70	54	36	56	44	47	38	53
GGTAAGTACCCCCATT	alt_862_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCTGGGTCTTTG	alt_862_RC	0	0	0	0	0	0	0	0	0	0
TCGTAGCTCTTCATTT	alt_862_RC	161	94	195	172	92	147	124	134	102	154
AGCTTGATTTATTTCA	alt_862_RC	145	57	190	153	68	160	84	144	68	121
CTTCCTTACGGCCGAA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CCGATACGAACCCCGA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTTCACTCGTCCG	ref_666_reverse	2	13	6	5	4	11	17	6	13	1
GAAATAAGCTCCCACG	ref_666_reverse	31	49	23	25	49	20	67	24	76	28
TTAACGGTGGTCCCCC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGATTTCGATCCT	ref_666_reverse	10	27	22	14	16	19	28	9	15	9
CATCCTGAGACGCTCC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCCGTCAGTGTGC	ref_666_reverse	6	9	8	2	12	1	8	6	8	3
CCGCACCCTCGTTTGT	ref_666_reverse	25	72	44	31	48	27	51	31	53	31
GGCCAGGCTAGTAATC	ref_666_reverse	79	102	88	66	91	55	99	56	119	62
AGAATTGTTGAAAGGC	ref_666_reverse	18	15	17	11	27	13	28	15	20	12
GTTTCGGCTGCTGTTT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCTTTGTATCGTT	ref_666_reverse	8	13	13	13	14	3	18	10	18	10
TTTGTTCTATCTACCC	ref_666_reverse	0	1	2	3	3	1	1	1	2	0
TTACGTTATTTATGGC	ref_666_reverse	4	9	7	7	15	10	14	4	15	6
TTTTGTGTCGTGTTGT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTGCTCCTTCTGT	ref_666_reverse	28	36	26	36	29	24	36	25	59	25
TACAGATTATGCTTCT	ref_666_reverse	33	71	34	46	66	34	45	39	52	34
TGGTCGTTCTTAACAA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCCGTCAAGAAAC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTTCCTTAATCCT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCGTAATGTAAG	ref_666_reverse	39	87	32	37	101	34	97	34	90	28
TGTCTCTTTGACGCTC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCGTTTGTACCGC	ref_666_reverse	9	6	8	4	19	4	13	6	15	5
GTTTTCTCTCAATCAT	ref_666_reverse	4	6	4	2	9	7	6	8	14	4
TGGAAGTTCCATGGGG	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CTCGATTTGTTTATAT	ref_666_reverse	3	5	4	4	12	4	13	6	15	4
AAGGAGATTCACTCGT	ref_666_reverse	21	43	28	23	46	27	34	17	43	21
AAAACCACATGTCACA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CAGTAGAGAGGCGTCT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
AGCGAGGTACGTAAAC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TTCACGTTCTAGCTCC	ref_666_reverse	0	2	1	1	9	0	2	0	4	1
TAGCTGGCTAAATGTA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TATATGTCACCATGAG	ref_666_reverse	28	36	28	25	47	19	52	22	42	25
AAATTTTACCAGTTAC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
AGTGACAGCGGTGAGC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTGGTGAAGCAG	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCTATTTTGTGTT	ref_666_reverse	1	5	4	6	4	3	5	1	0	2
CCACCAGTGGTTTAAG	ref_666_reverse	11	17	14	15	21	4	15	5	30	7
GTCGACTACTATTTAA	ref_666_reverse	36	54	51	61	62	52	57	41	61	33
CTCGTATTTCCGCAAT	ref_666_reverse	16	42	17	22	36	18	48	16	36	18
GCATCCAATGTCTGGT	ref_666_reverse	5	14	12	8	17	6	19	6	4	9
CGGGCGAGGCTACACT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TCCAAAGTGGATTAGG	ref_666_reverse	5	10	6	10	10	5	22	20	17	6
GATGCGGTAATTGTAA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCGGGTCTTTGAT	ref_666_reverse	11	5	7	2	7	7	13	6	17	4
TTAGTGGGCTTGGTCC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCCAAGATGGTC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAGATATGAATCG	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGGCTGCTGAAAC	ref_666_reverse	7	12	9	9	13	6	7	3	14	3
GCCAATTATGTATCGT	ref_666_reverse	17	30	17	17	26	10	23	9	40	8
CAACAAGTGAACGGAT	ref_666_reverse	30	55	37	23	57	23	51	27	51	20
GAGCTATGCCTACCGA	ref_666_reverse	30	59	51	37	82	37	75	33	71	44
GCATTAGAACTTTTTC	ref_666_reverse	3	7	2	1	6	5	6	4	4	5
GGTTAAGAGACTTGTT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
ATATGAGATCGGTAGT	ref_666_reverse	9	10	11	5	17	5	20	5	16	7
GAATGTTTCACTTGGG	ref_666_reverse	7	17	7	7	10	7	16	4	12	4
GACCTCTTTCTCGTAC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTGTTCGCAGGAA	ref_666_reverse	4	1	2	7	6	4	5	11	4	4
GTCCGGCCTTAACGGC	ref_666_reverse	11	22	12	12	23	14	23	26	24	19
TGTGTTGGATGATTAG	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TTCAACGGCCTGACCC	ref_666_reverse	1	3	2	5	7	1	7	2	10	3
ATTTGTCCACTTACCC	ref_666_reverse	0	0	0	0	0	0	0	1	1	0
AAAACGTGGCCTGCGT	ref_666_reverse	4	5	4	5	8	9	5	6	14	5
CTAGTGAACTTTTAGG	ref_666_reverse	4	9	1	0	5	1	9	1	3	4
TGGTCGACTCGGCAAC	ref_666_reverse	45	78	39	37	84	26	65	39	84	45
TCAATTCTCGTGCTCG	ref_666_reverse	17	41	22	12	29	18	44	10	29	19
GGATCAGTGTGGCTAC	ref_666_reverse	6	5	5	2	4	4	2	5	3	4
CGACCAATTTCTCCGT	ref_666_reverse	10	38	27	28	40	17	48	19	36	18
CTTCAGGCGGGTCACT	ref_666_reverse	12	17	12	7	22	5	26	10	26	8
CAAGCGAGTGAGGAGC	ref_666_reverse	4	18	10	8	12	5	13	12	13	6
GTTGCTCCACCGTCTA	ref_666_reverse	4	17	8	1	18	4	27	8	20	5
TTTCTTGTGGAACACG	ref_666_reverse	2	7	7	1	7	2	2	0	5	1
TCATCATAGCCTTTAT	ref_666_reverse	11	16	16	8	18	11	26	15	22	10
TCTGGGCGTATGCCCA	ref_666_reverse	5	26	11	9	31	12	18	10	30	10
GACTTTTAGAATTGAG	ref_666_reverse	26	70	43	33	77	38	58	37	83	28
ATAGGGGCGCTCTGGG	ref_666_reverse	51	71	66	60	83	48	101	47	74	44
GAGGTCAAACGACGCC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGGTTTCCAGTGT	ref_666_reverse	0	1	0	1	1	1	3	1	3	1
CGCCGGTAAGCACTCC	ref_666_reverse	2	6	3	3	4	1	7	2	6	4
TTTATTTACCGCGCGC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TCGATAGCATTGTGCC	ref_666_reverse	19	46	29	20	44	22	58	19	47	24
ATCCTGTTTGCGGTGC	ref_666_reverse	36	44	32	31	36	17	48	40	79	30
ATCTTTTCAAGTAGCC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAGTTCGCGTATC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
ATAATTCTAGACGGTC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TCTTACTATCGATAAT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TACTTATGGCCTAACA	ref_666_reverse	8	30	17	17	23	7	18	8	39	13
CCCTAGTAGACAGAGC	ref_666_reverse	46	100	59	46	88	35	99	45	106	33
TCCGGCCAGTGGCACT	ref_666_reverse	53	121	61	49	133	41	140	55	137	60
TTCGGCCGGCCTGTCA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCCCAAGCATTTT	ref_666_reverse	20	30	28	18	38	18	45	22	36	18
GATGTATAGGCTTCGT	ref_666_reverse	17	29	27	13	33	21	39	26	43	24
TCCGGTCTATAACCGC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGCTTGGACCTCA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAGCGAGTGGTTC	ref_666_reverse	5	6	6	3	7	3	8	7	12	5
AATATTATTAGCAGTT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
GAACATGTTTTGTCTT	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGAGAAGCCACGG	ref_666_reverse	70	100	69	64	126	64	116	65	135	42
CAGGTTCTTCATGATC	ref_666_reverse	3	15	11	5	10	4	10	10	11	6
CACCCTTTCGTCGTGA	ref_666_reverse	20	54	32	30	57	19	68	28	62	22
TTTTTTGTGATCATCA	ref_666_reverse	9	15	10	7	8	12	14	6	16	7
GATCGGATTCTAGTTT	ref_666_reverse	4	4	1	1	2	0	3	0	3	2
TACGAGAACGCAGGTG	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
AGAAACATCTTTGGCG	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
CATAGATTGGCAAGGA	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTGAAGTAAAGGG	ref_666_reverse	137	213	127	149	195	121	255	109	229	99
TTCACCATTGATAGGC	ref_666_reverse	4	13	5	5	17	7	17	2	16	3
TCTTTGGACCAGCAGG	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
ATAATGTTGGGATATT	ref_666_reverse	13	21	18	5	30	12	30	14	28	17
AATCCTTGCATAATGG	ref_666_reverse	22	23	16	11	29	12	28	12	27	9
CTTCAGGGCGAGATCA	ref_666_reverse	13	37	30	15	29	18	28	19	25	19
TTCGTTGGAGTACTGG	ref_666_reverse	15	24	10	6	29	4	16	9	20	4
CGTATCCCTTATCCTT	ref_666_reverse	6	5	5	7	7	0	7	4	8	4
CATAAAGGGCTCTCGT	ref_666_reverse	11	16	9	9	18	14	15	8	17	11
GCTTTTGTAATCCCGA	ref_666_reverse	22	39	35	20	38	18	45	20	39	20
TTATCTTTCGTGCGGC	ref_666_reverse	0	0	0	0	0	0	0	0	0	0
AGGATTCAAAGCCCCT	ref_666_reverse	66	102	74	83	105	68	90	82	98	62
TTGGCCCGTTATTCGG	ref_666_reverse	23	47	40	21	47	25	51	23	41	32
TCCTTTTTCTGTATTG	ref_666_reverse	51	98	56	48	103	59	97	53	114	53
ACATCCAAGTCTCGGC	ref_666_reverse	7	20	15	11	24	11	23	3	11	7
GTCTTTAATCACTTTT	ref_666_reverse	14	30	21	24	29	13	41	22	33	16
CCTTTTGCTACACGCT	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTCGTCCGATCGA	ref_3554_fdr	40	49	59	46	51	46	55	36	44	42
GTCCCTTGTAGACGGG	ref_3554_fdr	27	29	31	30	31	34	37	20	23	31
TGAGTATAGACATGTT	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
ATCTACAACGCCCTGA	ref_3554_fdr	2	5	4	2	6	3	6	4	4	7
ATCCAAAATGGCGCGA	ref_3554_fdr	74	55	108	76	46	96	77	71	72	73
TTGCACTTATCTGTTA	ref_3554_fdr	6	30	18	11	22	9	23	11	25	16
ATTACATTCGTTATAT	ref_3554_fdr	22	14	25	18	23	17	34	24	30	17
GGAGTTACGGCTAGAA	alt_3554_fdr	44	48	31	42	43	36	44	52	41	45
GCCAACTCTCACTTTC	ref_3554_fdr	16	30	9	19	20	15	33	14	23	24
TAGTACGGCCACGTCC	ref_3554_fdr	49	54	64	52	98	57	88	68	90	40
CTCGAGCGTCACCTTC	ref_3554_fdr	45	47	62	38	58	40	34	38	54	39
TGCCATCCCGGTGGCT	alt_3554_fdr	49	68	58	64	62	60	64	55	78	54
TCGTCGCAGAGATGTC	ref_3554_fdr	28	42	46	44	35	34	39	27	59	33
ATTAATCTGGCGGTAC	alt_3554_fdr	43	51	58	37	42	56	47	38	63	58
GCTTAAATTTCTGTTT	ref_3554_fdr	2	2	3	2	3	6	6	3	5	4
TTCTAGTTCTTTCGAG	ref_3554_fdr	71	77	76	61	93	43	98	65	103	50
CAATTGCGCATGTTGG	ref_3554_fdr	36	53	46	29	39	38	39	39	50	37
GATGTCTGTATTTCGA	ref_3554_fdr	119	135	141	106	138	120	158	114	143	108
TTATTCCAACATGATC	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGCGTTTAGCTCA	ref_3554_fdr	243	151	271	241	169	246	134	224	171	207
TATAAGGTGTGGGGCC	alt_3554_fdr	41	25	43	25	31	33	33	30	28	29
CTTTAGAATAGTACGG	ref_3554_fdr	150	167	129	109	141	138	141	110	153	115
ATTAGGCCAGCTAGAT	ref_3554_fdr	9	13	14	9	20	10	16	8	15	3
CTGGCGCTAGCCGTGG	ref_3554_fdr	7	7	19	7	22	11	13	4	17	6
GCTCTTAGTCCTATTG	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
ACCCAATTTTCTCCGC	ref_3554_fdr	20	27	31	25	34	20	22	25	34	21
TTGTATTTTTATACCC	ref_3554_fdr	8	14	14	18	12	12	17	7	18	9
CTTACGTGCTACGCTG	ref_3554_fdr	40	53	52	40	42	46	42	27	64	26
CTGGCGATGGACGATT	ref_3554_fdr	25	26	42	28	37	34	39	20	40	26
CCGCAGAGATTGTTCC	ref_3554_fdr	198	251	226	182	223	221	252	188	288	171
GTCCCGGAACTTTCTG	ref_3554_fdr	4	6	11	4	7	5	3	2	10	6
CCAGGTGTGGATGTAG	ref_3554_fdr	54	77	50	31	68	47	54	54	81	42
GAAGTTCCGGGATCTC	ref_3554_fdr	122	116	133	99	114	111	115	102	131	85
ATATCGTATACGGACG	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAAGTCACCAGAG	ref_3554_fdr	36	55	59	34	61	37	49	36	67	31
AGACTCCATGCCGGTT	ref_3554_fdr	36	37	67	39	43	49	48	39	48	46
TATATTCAGACCATTC	ref_3554_fdr	28	39	19	27	17	22	38	14	34	18
CGCCCAGTGAATCTGT	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTACACTGCGCT	ref_3554_fdr	18	28	26	28	28	23	24	20	28	32
TGCACTGCGTTGGTCT	ref_3554_fdr	13	12	8	12	11	20	21	6	13	13
CCACAAGTATTAACAG	ref_3554_fdr	29	25	28	16	38	17	33	21	47	23
ACTGCTTCAACTGCAC	ref_3554_fdr	4	9	4	5	12	5	6	2	9	7
CCCTGGCCTACAACAA	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
GGATATCCTTTTATAG	ref_3554_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAGTGGAAGGCGT	ref_3554_fdr	42	67	47	33	56	28	44	36	61	29
TTAGTAACGCAAAGCC	ref_3554_fdr	31	34	31	29	36	34	39	29	48	29
TTCTCTATGTTTATTT	ref_3554_fdr	11	12	18	14	13	24	16	12	17	22
CTTGTGTACTTGTTGG	ref_3554_fdr	25	15	19	15	17	14	18	11	13	14
AGGACATATGCTCCGT	ref_3665_upstream	14	9	15	10	7	11	8	17	13	11
TCCTTTCTACAGCTCA	ref_3665_upstream	38	14	25	20	20	26	22	23	16	21
GTTCTCCTTTATACGT	ref_3665_upstream	5	3	3	1	2	1	1	2	3	3
CACATCGCGTTTTAGG	ref_3665_upstream	29	16	38	30	26	24	25	23	25	21
TGTGGTGTCAATGTCC	ref_3665_upstream	9	11	15	9	9	5	6	8	11	4
CTTGTAGAGTAAGTTT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCGGGCGATTGGT	ref_3665_upstream	62	77	73	49	63	63	61	53	72	61
AAGTAGTTACTCAGTG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTGCTGTACAGCT	ref_3665_upstream	129	86	136	156	81	107	105	123	75	85
TTTAGTATCTCGTCTA	ref_3665_upstream	17	12	24	19	12	23	11	17	14	17
GGCAACGGTCCGCGTT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGAGATGACCTTA	ref_3665_upstream	4	9	19	15	6	13	11	5	10	9
TTGCTCCAGTGGTAAC	ref_3665_upstream	5	3	6	4	4	4	7	3	2	2
TATGGAATTTGGGTTA	ref_3665_upstream	13	8	17	12	7	12	8	7	8	11
TTTAGAGACTTTTAAT	ref_3665_upstream	9	5	8	14	13	15	18	11	10	11
TTGTCACGGTCTGTAA	ref_3665_upstream	17	6	17	14	11	10	13	14	8	20
GTTTCTCCGATCGTGG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTTAATCGAGACT	ref_3665_upstream	48	31	58	40	33	38	42	59	39	39
ATTCGACATATGTACT	ref_3665_upstream	16	16	23	20	18	22	21	19	19	16
TCAATATTCGCTCTAG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
ATCACACGCAGCGTGA	ref_3665_upstream	76	57	106	95	59	69	76	79	58	68
ACACTGTTTTACATTT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGTCACGGGGATT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CCATGCCTTCAGGCAA	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CATCATCAGCAAATTG	ref_3665_upstream	33	14	32	46	29	35	34	32	27	36
GTCTGTTTTAGGCACG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CATTTAATGGACGCTA	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATCTCAGGCTCT	ref_3665_upstream	27	31	37	33	29	32	28	22	28	28
ACGCTCCCTATCTTCT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TACGTTACCGTTCTCA	ref_3665_upstream	46	43	45	42	39	29	42	32	36	33
ACTGGGTCCACTAACT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCTGAATGTCATC	ref_3665_upstream	7	2	1	3	3	2	2	2	4	2
GGCCAGTCCTTTTGCA	ref_3665_upstream	61	65	74	80	55	46	57	47	74	60
TAGCTGGCGTTAGCGA	ref_3665_upstream	111	104	154	152	94	116	87	106	82	123
CTCGAGAATTTTTAAG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CCCACGGGTACATAAC	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCGCGTTCCTGTG	ref_3665_upstream	21	11	13	19	11	11	12	8	8	15
GAATTTGTGTTTATGG	ref_3665_upstream	25	25	63	38	35	38	33	30	42	40
GAGGTCATGAGTGTTC	ref_3665_upstream	5	10	11	12	8	15	7	10	6	7
CTCTGGTTCTCTTAGG	ref_3665_upstream	3	5	3	4	5	2	4	3	1	1
TGATTTCAAGCCAACT	ref_3665_upstream	82	42	64	69	52	48	46	60	49	51
TAGGATGTAGTGCTTA	ref_3665_upstream	22	15	32	25	22	24	15	14	29	22
ATGAGGCATTTTATAT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TAAGACAAATTTTATG	ref_3665_upstream	6	2	2	6	4	2	2	2	1	4
TTAAATTCCATAGCTC	ref_3665_upstream	162	130	179	173	127	151	135	144	125	161
GAGACGCTACTGTGCG	ref_3665_upstream	0	1	1	1	2	2	0	1	0	1
CCGGGTACCTCGAAGC	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTCCTCTAATAAG	ref_3665_upstream	30	25	41	21	22	19	21	20	33	23
CGACACCATGGAGCAA	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCACACACTCCAC	ref_3665_upstream	61	52	74	48	68	53	75	58	66	55
GACTTAAGAATGAGGA	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CGACACCATGGTGCAA	ref_3665_upstream	44	35	58	54	42	43	25	38	49	47
GCGCTCTCCAGCCAGC	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CGCAAGTAGCTGTTTT	ref_3665_upstream	35	30	55	37	31	35	29	42	28	56
TCCAAAGTTACCACCC	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCCCTCCATTCAC	ref_3665_upstream	92	39	59	65	44	60	52	55	49	44
ATGTCCCCGACTGTAA	ref_3665_upstream	15	28	24	25	18	20	18	16	19	11
TTAATTTGTCGAGCGA	ref_3665_upstream	23	22	40	29	22	26	24	35	12	31
GTTTTCTAGTGCTCTC	ref_3665_upstream	27	12	18	26	19	20	18	16	17	25
CGACCTTAGCGTTCGC	ref_3665_upstream	8	8	11	9	13	19	12	13	25	13
GTCCGTAAGATTTTCG	ref_3665_upstream	77	54	88	60	70	64	62	63	42	63
ACCGTAATGCGTCCTC	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAGCGCGAGATCG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCAGACCGCAGCT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
ATCGAGCACCGGCTAT	ref_3665_upstream	9	17	27	17	14	14	20	12	16	19
GTTTACAGTGTAGTGT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
GCTACCTGAAGATTGA	ref_3665_upstream	33	19	36	18	10	27	27	29	11	29
GAAGCTAACTTTCGTA	ref_3665_upstream	25	8	42	42	19	28	18	30	16	16
TGCTTTCTCATATTGT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTTACAGCCTCCG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTTTGCCACACTT	ref_3665_upstream	76	52	84	83	69	64	59	69	74	82
CTCGCTAGCCGCGCAA	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGCTCGCGGTGTG	ref_3665_upstream	41	32	48	32	45	44	34	41	37	27
TACTTCACCATAGTGC	ref_3665_upstream	0	1	3	4	4	4	0	0	0	1
GCTTTTTTCCGCAATA	ref_3665_upstream	12	4	11	7	5	6	7	11	9	8
GTGATTATTCCAGAGC	ref_3665_upstream	39	31	48	66	28	41	37	31	40	41
TTCCCAACATGTGTAT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CATATCTCGCTCCTGG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TAATTTCCACCCCTCC	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
TCGACACATTTGCACG	ref_3665_upstream	68	55	100	69	51	71	75	40	53	59
TCAGATGGAGTAGTGC	ref_3665_upstream	64	52	74	89	49	67	55	49	68	57
TGGCATCCGCCACGGC	ref_3665_upstream	29	27	46	39	33	49	19	27	33	32
CATTAAACATTACGTA	ref_3665_upstream	19	9	18	14	12	21	9	8	16	10
GCCAGGTAAGGCCCGT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
CATTCATATGGTTTTT	ref_3665_upstream	34	30	54	32	30	29	29	36	28	41
CCGACAGGAATAACAG	ref_3665_upstream	13	6	18	12	11	17	15	16	19	10
CACCACGTCAAGGCTT	ref_3665_upstream	5	1	1	3	0	2	3	0	1	0
TGTGCGGTCGTGCAAT	ref_3665_upstream	30	35	37	33	23	28	27	23	25	38
AGTAGCGTCTCATACA	ref_3665_upstream	11	8	10	5	5	6	7	9	3	9
CCTAGCACTGTTAGAT	ref_3665_upstream	63	55	61	75	58	68	53	64	63	60
GTCACGCTTCGACGTG	ref_3665_upstream	37	59	43	53	67	46	64	40	71	35
CTCAGCGTCGAATTCC	ref_3665_upstream	32	40	35	44	23	26	20	18	29	22
AAGCCGAAATTTGAGG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTCGGGGTGCCCT	ref_3665_upstream	106	96	173	164	105	97	105	118	144	119
GCAACCAACTCTCTAG	ref_3665_upstream	2	2	2	0	3	1	4	5	8	4
GACTACATTATCACCG	ref_3665_upstream	6	8	9	5	8	7	9	5	2	7
TTCGTTTACTATACGT	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTAAGAGGTCAAA	ref_3665_upstream	18	16	16	15	9	15	22	18	18	16
TGTAATAAATATGTTA	ref_3665_upstream	118	91	127	122	61	99	86	102	64	105
GCCCTGCCGGTATTTA	ref_3665_upstream	10	3	9	8	6	12	13	5	7	8
GACAGCTGCAAATCCT	ref_3665_upstream	2	1	10	2	0	2	1	3	4	1
AACCCTAAGTGCGTCT	ref_3665_upstream	24	37	37	33	35	32	28	39	21	24
TTATTCTTCCTCGCTG	ref_3665_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCATTCTACTTAC	ref_2817_upstream	3	59	4	3	67	5	67	1	58	2
ATATTACTTGTTCCCC	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTAACGCAATATT	ref_2817_upstream	12	11	4	6	8	5	9	8	16	8
CTTCAGAGGGTATATA	ref_2817_upstream	32	59	44	35	96	33	83	31	93	34
CTCTGGGCAGGTCAGG	ref_2817_upstream	5	10	6	4	3	3	9	4	4	3
CATACACCTATGCGCC	ref_2817_upstream	10	29	14	8	21	17	23	10	18	9
CTGTGCTGGTAGTACC	ref_2817_upstream	21	32	25	25	48	9	27	17	27	13
CTGACTCGCCGGAGTA	ref_2817_upstream	9	10	5	3	10	7	6	3	9	2
GTACAATGCAGTAGAG	ref_2817_upstream	25	44	28	22	57	26	43	26	60	18
GCGTACTGTACTGGTT	ref_2817_upstream	44	62	68	40	100	37	91	55	96	40
GGAATCGCGCTAAGGT	ref_2817_upstream	8	24	11	7	12	4	22	8	18	10
GACTCTTCTTCCATGA	ref_2817_upstream	5	9	12	1	10	5	12	3	13	7
ACAGTATTCGTTTGTA	ref_2817_upstream	21	41	25	21	26	8	29	23	46	15
TCTATGCTCCGGTCGG	ref_2817_upstream	77	195	135	124	173	81	186	93	205	93
GCCTAGGGTCGCTGGA	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GATACTCCCATCAGAT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCGGCTCTTCCTT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TTATCCATTGCCTTCT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCTGCTGTCTCAG	ref_2817_upstream	18	23	26	24	28	14	26	19	16	18
TCTTTTCACGTTTCAA	ref_2817_upstream	4	9	3	3	8	1	10	3	9	5
AGAATCACGGTAGGAC	ref_2817_upstream	119	176	108	107	195	106	209	78	160	84
TAATTCATGGCTTTTT	ref_2817_upstream	46	80	78	66	55	48	77	63	105	50
CACTTCGCATTGCTAT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GGGCGCAGCGCCTATG	ref_2817_upstream	52	85	67	50	85	51	72	36	95	43
GGTACTAATCGAGCCG	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTGATGTCGACGTCAC	ref_2817_upstream	15	44	11	11	45	10	43	5	41	10
AAGGGACGTAGATTAT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCATTGTAACAAA	ref_2817_upstream	21	50	34	20	36	26	48	25	45	10
GTATCGTGGGGACCAC	ref_2817_upstream	88	148	105	95	160	96	164	68	172	69
CACAGCTACGTCACCA	ref_2817_upstream	1	8	3	4	9	4	7	6	13	4
CGGATAGCTTCCACCG	ref_2817_upstream	78	137	120	91	155	82	152	78	156	71
ATATCTGGTATGTTCT	ref_2817_upstream	1	5	2	2	14	5	10	1	13	5
CATTTAAGGGGAATAG	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCAGCCAAATGGT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
ATTGACGATCGTACCC	ref_2817_upstream	186	317	201	174	246	184	315	132	323	133
ATTATGCTATCCTGAC	ref_2817_upstream	72	130	73	57	112	50	119	51	129	44
TGCGAAGGTCGAATCC	ref_2817_upstream	13	21	14	17	27	13	20	13	25	15
TGCCATAATTTTTGTT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TACTGGCAACGGTATC	ref_2817_upstream	29	56	42	30	63	47	70	46	57	25
ACTTTTCGTGGTTATT	ref_2817_upstream	118	197	160	122	218	115	209	128	232	127
AATTTTATGTTCCTAA	ref_2817_upstream	35	83	62	51	99	46	87	40	71	35
ATTTTCCAGGTCCGGG	ref_2817_upstream	2	1	2	2	3	0	3	2	4	4
CTGCCGGGTGTTTTGT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTAATGTATTGCATTG	ref_2817_upstream	7	14	8	2	13	13	13	4	32	10
CAGTATATTACCTTCG	ref_2817_upstream	16	45	29	34	59	22	43	18	47	14
CATTATAGCTTATGTA	ref_2817_upstream	6	9	3	7	15	9	10	7	13	9
GAGCTGCATGTAGTAT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTCTCCCGCCCAC	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GGGACAACACGGGGAA	ref_2817_upstream	4	17	9	12	12	6	11	9	12	7
ATTCCAGTCACATGTG	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCGGAGCTTATAC	ref_2817_upstream	23	33	18	16	35	19	41	16	39	13
ACTGAATGGGTCGATG	ref_2817_upstream	15	22	9	10	11	12	25	17	24	15
CGTGCAATTTCACTTT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTTGATTTTCGGTCTT	ref_2817_upstream	5	7	8	4	6	1	7	2	11	6
CACCGCACGTTCGTCT	ref_2817_upstream	5	10	6	4	13	2	7	3	14	3
AAAATTATGATTTCTG	ref_2817_upstream	19	43	12	11	15	12	19	9	16	12
GTAGTACCTAGACGTT	ref_2817_upstream	61	127	90	89	148	74	129	78	149	61
TATAACTGTTTCAAAC	ref_2817_upstream	6	12	7	3	8	12	12	4	8	5
AGGGCGTGATCTAGGC	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTTGCAGCTTCT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TGCATGATTTTGGCTG	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAGCTAGGAGCCG	ref_2817_upstream	22	40	32	29	66	37	51	18	56	27
GTCGCTGAGAGTTATT	ref_2817_upstream	133	207	159	150	228	143	273	144	271	120
CTAACTGTTGTCGACG	ref_2817_upstream	6	5	4	2	12	3	12	2	23	3
TTTCAATTTATTTAAC	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
ACGTATGTGTGTTATC	ref_2817_upstream	87	153	104	113	173	84	185	77	182	76
GTCGGTGCTCACCGAA	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GACGTAATGAATGCAG	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTGTTCTTAGTTT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTTGTCAGGCCTG	ref_2817_upstream	10	13	10	8	14	8	7	8	10	10
GTGTACGGGGCTTCCG	ref_2817_upstream	8	18	4	10	15	8	21	6	17	12
TCTTGTAATGTGGAGT	ref_2817_upstream	39	58	41	46	64	35	82	41	70	27
CAATTTTAGTTTTTGT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGCGAGCTCTTCC	ref_2817_upstream	12	21	21	8	26	16	26	17	40	11
CCGGATCTTGTTGATT	ref_2817_upstream	164	229	192	151	290	136	274	133	338	144
TAGGTCTTTTCGTATA	ref_2817_upstream	19	14	30	19	38	25	39	15	45	13
AGCATTACCAATCAGG	ref_2817_upstream	43	87	67	45	108	35	96	35	95	24
GGATGAAACGTTATTA	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TTCATCGTGGCTGTCG	ref_2817_upstream	43	74	51	54	56	36	61	56	93	34
GGGGACGATTTTGTCG	ref_2817_upstream	15	20	14	12	25	14	23	11	16	11
ACTTTGACAGTTTTGA	ref_2817_upstream	33	45	36	18	48	24	68	22	68	38
ATGCAATCTATAGATG	ref_2817_upstream	40	87	41	32	82	59	92	49	90	38
CGTGTTACGCGGGTCC	ref_2817_upstream	76	124	121	92	114	74	138	73	128	59
CATCTCAACGCACCGA	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCCGTGTAGGTCA	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
TATCCTTACAGTACAA	ref_2817_upstream	0	1	1	0	0	0	1	0	0	0
GCCTGAATGGCACTGC	ref_2817_upstream	24	39	29	21	38	35	39	27	41	31
GTGTATCTTCGGGCGT	ref_2817_upstream	6	12	7	10	7	10	19	6	17	11
ACTGACCTACTGGTCC	ref_2817_upstream	18	24	24	21	30	15	22	16	28	10
GAACGTACACAGCCCT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GTCATTACGCTCGGTT	ref_2817_upstream	32	68	32	37	53	40	60	26	65	19
TGCTTCGTATTAGGTC	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTCTCCTGTCAAG	ref_2817_upstream	6	5	2	5	3	2	1	2	4	0
CATTCGAATTACATTC	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
AGGGCTGCACTGTTTC	ref_2817_upstream	6	6	8	7	4	5	6	1	11	1
CTCGCGCTGGAGCAAC	ref_2817_upstream	3	4	1	4	4	2	5	2	5	3
CACGATCCGGCGTGCT	ref_2817_upstream	7	9	10	14	15	7	17	10	15	10
TTTCGTCACACGCAGG	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTACAGCTCCTATAAT	ref_2817_upstream	2	7	2	4	5	2	2	5	1	2
GATCTGACGTGTTCTT	ref_2817_upstream	6	8	12	5	14	3	11	5	10	8
GGGCATGTCGGTAACG	ref_2817_upstream	9	10	5	6	12	5	13	4	16	3
CTTTGTATGCGGGTGC	ref_2817_upstream	19	32	22	12	43	18	24	22	32	14
CGCGGGATCGGGAATT	ref_2817_upstream	4	5	3	7	5	10	6	3	12	1
ATTTTTTGGTAACGGG	ref_2817_upstream	37	63	47	23	61	35	77	36	51	23
GCTTTTTAGAATTTTT	ref_2817_upstream	51	68	43	36	60	48	56	41	76	40
TTATGCCATAACTAAT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTAGGGAACGCGC	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GAATGTCCGGGTGCTT	ref_2817_upstream	40	41	35	29	45	28	39	31	45	16
CGGGAACTAGGGAACC	ref_2817_upstream	18	19	24	19	29	18	27	8	34	14
TCCTGCCTCAGGATCA	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCAACTCTGGTAC	ref_2817_upstream	36	44	27	17	36	17	46	24	57	20
CGTTTACTGTCATTCG	ref_2817_upstream	2	1	1	0	4	1	3	2	5	4
TAGGGGATTAATAGTA	ref_2817_upstream	11	25	7	19	28	11	27	13	30	13
TAGTCGGATAAAGCGC	ref_2817_upstream	2	9	5	15	9	9	15	5	5	2
TTGATTATCCTCTTAT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
CGCATAGGTCTGAGAA	ref_2817_upstream	10	23	13	6	23	10	24	10	12	5
ACCCGTTGTTCTAATC	ref_2817_upstream	0	2	2	0	2	2	2	0	5	1
CCTTGTCGGAGCATAC	ref_2817_upstream	29	78	48	41	77	26	55	38	98	21
TTAAATCCAATTGGTC	ref_2817_upstream	21	28	15	19	35	15	25	16	24	22
CCTGACGGTGCTTTAA	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGACACTGATTGT	ref_2817_upstream	16	32	22	12	28	9	27	13	30	13
AGGTGTGTCTACTTTA	ref_2817_upstream	12	19	9	15	22	10	25	8	15	3
CCAATTCCATAGCAGT	ref_2817_upstream	90	179	105	100	175	90	217	77	197	95
TTCAGCTGGGGACCTG	ref_2817_upstream	35	55	46	29	52	30	48	28	77	27
GGGCTCCATTTACGCA	ref_2817_upstream	31	55	38	42	69	33	47	23	67	30
GTTAAGGGATAATTGG	ref_2817_upstream	66	99	84	60	96	64	118	63	127	63
AAATTTGCGATCCAAG	ref_2817_upstream	19	50	26	25	33	17	49	24	31	17
GCCCAAAGAGGGTAGT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCAAAGTAGACTC	ref_2817_upstream	5	12	4	3	15	8	13	10	9	6
CTTGGCGCTAAACTTG	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGAGAGTGGCGTT	ref_2817_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGTGCGCAATCCA	alt_5261_upstream	39	70	56	43	56	38	62	44	76	42
TAAATGGGATCGGCGG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TAATGGGCTTCGTCGA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGCCGTCGCGCGA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCGATGTATCACC	alt_5261_upstream	7	7	11	7	17	8	21	14	14	10
TCAGAATTATACAGTC	alt_5261_upstream	12	22	22	20	36	18	33	23	32	7
TTTTGGGACCTTATTT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GCTTACTACGTTATGC	alt_5261_upstream	22	20	23	22	35	21	20	12	23	11
GTTTGCGCAATCGAGA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CATTACAATGAATACC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCAATTAGGGCGTTAG	alt_5261_upstream	14	22	22	24	26	13	31	11	26	17
TCTCACGCGCTCTTCC	alt_5261_upstream	7	5	7	6	10	6	3	4	8	2
GACACGAGCACGGCAA	alt_5261_upstream	2	6	3	4	3	5	8	4	6	2
ACATTTCTGACTCTAG	alt_5261_upstream	40	37	38	30	43	28	34	35	40	26
CCTTGGAGTAGTTAGT	alt_5261_upstream	3	11	3	0	4	5	8	2	3	1
CCAATCGGGTCAAGAG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATCAACTCGAACTTTC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTGCTGCAGGCAC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGAATCTGCGCAG	alt_5261_upstream	5	7	11	11	11	12	11	4	19	7
TTGGTTGTAGACTTGG	alt_5261_upstream	59	115	99	97	115	64	95	81	120	69
TTAAACCGTAACCATG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCTACATTGCCTC	alt_5261_upstream	11	28	12	8	15	14	12	11	20	9
GTTTCGATCTATAACG	alt_5261_upstream	41	33	36	35	36	34	37	30	28	25
GCTTAGGTCCAAAATC	alt_5261_upstream	31	47	21	29	47	26	48	20	52	27
GGGTCAACCCGCCCAA	alt_5261_upstream	16	15	25	13	9	19	21	7	20	16
CAAGTATCCCTTACTG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAATCCCTTCGTA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
AGTATATAATTTTTCC	alt_5261_upstream	29	20	40	20	35	28	28	29	38	24
TGCCTCGTGCCTAATG	alt_5261_upstream	40	63	61	47	55	52	54	38	64	24
CTATTTACAGCAGCCT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCAACTGCTTGCT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TATCACTTGACCTTAA	alt_5261_upstream	6	14	10	8	7	9	17	7	22	4
GATGCTGAGTGTTGAG	alt_5261_upstream	71	103	76	79	110	77	109	73	113	41
GTTCGAGATACTAGGG	alt_5261_upstream	81	111	80	94	129	71	140	85	158	79
TTTCTCCCAGCTGCCT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCGCTATTCAGC	alt_5261_upstream	24	51	34	36	43	28	51	29	57	34
CGCATGAGTTAGTCTT	alt_5261_upstream	13	12	15	5	16	10	21	5	24	10
CCGACCATATATGATT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTGGTTTGTTAGA	alt_5261_upstream	8	17	6	5	12	4	15	10	9	3
GCCCCTATGTGTTTTC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTAACTTACTGCCAGG	alt_5261_upstream	21	33	29	23	34	16	36	26	36	23
TCTCCTCGTTCGTGAG	alt_5261_upstream	21	37	24	21	30	15	27	9	33	23
AAGTGCTCAATCTTCG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGTCAGTACGTATTTC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GAGGCAATCTATCGAC	alt_5261_upstream	42	79	36	33	46	33	72	43	71	29
GTCATGGCTAGCGCCT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGCGATCGGTATTCAA	alt_5261_upstream	9	23	18	18	13	14	11	13	12	8
CTGGCCTCGGGTGTAT	alt_5261_upstream	19	42	27	19	62	15	45	11	36	21
GCCGGCATCTTCTCGG	alt_5261_upstream	56	67	58	53	76	50	62	44	79	58
CTGTGGCTGGTGTACG	alt_5261_upstream	26	63	40	32	60	30	60	30	69	33
GGGGTTCGACCCTACA	alt_5261_upstream	62	74	77	53	72	54	77	41	80	46
ATAGATTGTTGTTCAA	alt_5261_upstream	17	31	15	12	25	6	26	21	24	19
CCACTGGCGTTGTGTT	alt_5261_upstream	11	29	16	11	21	5	21	16	21	6
GCCATTACTTGCTGTT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCGGTTATCCCG	alt_5261_upstream	7	20	8	10	20	10	23	17	17	16
CCCTCCGATAGACGCG	alt_5261_upstream	10	12	16	10	18	12	16	10	17	11
GGGATCGACAATGTAT	alt_5261_upstream	12	15	12	18	27	8	9	19	20	10
GACTTGCGCATGTATT	alt_5261_upstream	5	7	6	8	8	1	2	5	6	6
ATGGTAGCCGCTAATT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGAGACGAGCGTTGAC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTATCGTTACAATCGC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTCTATGGTTTGT	alt_5261_upstream	4	9	7	6	9	2	5	7	10	2
TGCATTTATAAAGGTT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCGCGGATTTCTC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGATAAGTTTCCGCAT	alt_5261_upstream	16	24	21	9	18	17	35	17	29	27
AAAGCTTCCTTGAGTA	alt_5261_upstream	12	19	13	8	11	9	23	12	14	3
TCAAGGACCGCATGGG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGTATCAAATTTC	alt_5261_upstream	52	72	52	62	78	59	83	44	92	56
TGGGCTACGCGATCCT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
AAACCGGTCTTTAGCG	alt_5261_upstream	16	51	21	20	45	19	39	17	76	10
CCTACGGGTCGTTGCG	alt_5261_upstream	86	131	82	67	141	74	135	60	154	69
GCTTTTTGTTGACCTT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CCTACGATTTTACCGC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTACAATGTGCCG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGATGATTGGCG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TACGGCAATGTTGAGC	alt_5261_upstream	25	27	26	26	32	28	29	18	19	15
TGCGCATTTCCCTCCA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGTGGTTAACGAA	alt_5261_upstream	34	60	45	32	37	28	58	25	52	36
CCAGACGCATATTGGA	alt_5261_upstream	8	35	10	12	44	10	31	9	36	8
ATTATACTGAATAGCC	alt_5261_upstream	7	14	11	6	15	7	18	10	20	6
CTGTCTATGGCTACGG	alt_5261_upstream	27	38	16	23	36	29	47	29	44	28
ACTGACCAATGCGTCG	alt_5261_upstream	1	10	8	1	8	4	10	4	8	7
AGTAACTGATTTATGT	alt_5261_upstream	96	93	118	94	99	100	111	96	99	90
GCCCGAAATAGATTGA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GAATCTTACTATTAAC	alt_5261_upstream	10	10	4	4	4	6	16	6	9	7
GGTACTCTTTAGTGAA	alt_5261_upstream	13	18	15	15	22	19	25	14	19	12
GGATCCACTTCCACAG	alt_5261_upstream	28	36	44	33	36	22	39	30	39	17
CCTAGGCTTCAATTGT	alt_5261_upstream	68	151	105	78	134	58	140	72	141	57
TCTCAATTTGCTATTA	alt_5261_upstream	15	30	23	19	38	15	30	23	39	14
GTGTAATTGGTAATCG	alt_5261_upstream	14	31	21	17	16	21	32	7	35	19
GGGGTTCGCCCCTACA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTACCATGCACCG	alt_5261_upstream	18	37	22	16	34	17	26	14	36	20
GATCTCGCTTCTGGGT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCAATGCGGCCCCCTT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTCATCGCTCCAGCAC	alt_5261_upstream	47	81	47	38	76	37	74	27	81	50
TATTAGGACAATTTAG	alt_5261_upstream	19	18	16	15	14	12	20	18	13	13
AGCAATCGGTGTTATA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTTTATGTACGGCAAA	alt_5261_upstream	2	2	7	2	3	3	3	2	5	1
GCTCATCTCCCGCGAG	alt_5261_upstream	9	8	11	5	16	11	16	13	16	4
GTCCACGTCTGCGATC	alt_5261_upstream	8	40	18	13	31	17	34	11	29	17
ATCTCTTGTCCCTAAA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCCCATTGTAGACGCC	alt_5261_upstream	19	36	11	9	39	15	42	11	32	13
TTTTAGTGTCAGTTAC	alt_5261_upstream	7	25	12	10	18	5	14	7	28	13
ATTTACACCCTATCAT	alt_5261_upstream	5	19	7	9	10	14	18	12	20	11
AATCCTCCACTTTGTA	alt_5261_upstream	30	46	51	27	34	42	56	30	64	36
GAAGAGTAAGTCGCCA	alt_5261_upstream	24	37	42	41	54	29	37	31	45	21
GATAGACAGTTTCTAT	alt_5261_upstream	9	20	15	9	19	5	17	9	22	4
ACCCCAACATTTGGAG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGCACCACTCAACTTT	alt_5261_upstream	19	24	21	21	32	17	39	10	27	17
GATGAGTAGGCTGATG	alt_5261_upstream	23	50	22	19	38	19	59	35	38	12
CATCACGATTCAACGA	alt_5261_upstream	4	7	15	6	16	8	9	9	9	5
GTGTCGAGACTTTTGC	alt_5261_upstream	2	6	4	3	6	5	7	9	8	5
TTTTGAGCTCTTTATG	alt_5261_upstream	29	46	39	39	25	23	63	29	39	18
TATCAAGTATACATTC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTGGAGTATGGTCTAA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GAAATGGTATAAATCT	alt_5261_upstream	9	7	2	3	3	2	5	6	5	6
GCAATCTTTCTCGGGT	alt_5261_upstream	65	65	84	84	78	70	80	48	78	71
TTTAATCGTTTGGCCG	alt_5261_upstream	6	8	11	4	7	2	5	1	5	4
TTTTTTATGCAATAGT	alt_5261_upstream	4	1	1	3	3	7	6	3	1	1
TTCTGCGTCATTGCCG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GTATGCGACAGTACGC	alt_5261_upstream	11	26	22	22	27	13	31	20	34	18
CAGTCCCGTAACCTCT	alt_5261_upstream	1	1	5	3	2	2	7	2	5	3
GTTGATTAACGGGCTT	alt_5261_upstream	24	27	23	16	14	21	24	34	28	13
CAATCGTTACAATCGC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTAAACTTATCG	alt_5261_upstream	11	10	13	19	19	10	13	11	14	13
CCGTTCCGTTTTGGGC	alt_5261_upstream	7	12	9	13	14	10	11	9	11	11
TATGCTGTTTCTATAA	alt_5261_upstream	5	10	0	6	9	4	14	4	5	4
TGCTGGTAATCATGGG	alt_5261_upstream	12	11	19	22	32	20	27	9	23	15
TGATATCTTAGGCACC	alt_5261_upstream	7	11	14	10	15	11	19	6	18	8
GTTCGAGATACTAGGA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCATAACCTTGCC	alt_5261_upstream	44	81	68	64	81	47	90	55	98	41
GGATTTAGTGACTGCC	alt_5261_upstream	5	20	15	10	16	8	18	8	21	5
TGTTGCTGCAAAACTC	alt_5261_upstream	24	26	15	16	27	26	20	23	27	20
TTCTCATGCCCGTACC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGACCGGCCTAGTCCT	alt_5261_upstream	5	13	13	17	6	3	10	10	15	12
GATAAAATATAGGCTA	alt_5261_upstream	21	30	30	22	18	20	45	12	27	18
TGTATGTACCCAGGGG	alt_5261_upstream	3	5	6	6	7	3	8	6	4	2
CTCGGTCGCTGCCTGT	alt_5261_upstream	9	32	10	8	21	8	23	5	30	15
TAGATTAACGTTAAAC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTCAGCTGGGTTA	alt_5261_upstream	35	68	44	37	79	27	75	35	78	18
CCTCTGGACTTTCACT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TATTATGCTTTCATTC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTCTGCCGGGCAC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTGTTAATGTATT	alt_5261_upstream	36	51	35	38	62	22	44	33	57	30
CGGCAGTCCCTCCTGG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
ACGATCTATAGGTTTT	alt_5261_upstream	28	51	56	22	44	28	47	22	51	20
AAGTCTAAAGACGCAC	alt_5261_upstream	1	0	0	0	2	0	1	2	0	0
AGTCCCGTCAGAATAA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTACTGTGCTCTTCTT	alt_5261_upstream	2	12	2	3	12	2	5	1	14	0
TCCTACGGTTTTGTCT	alt_5261_upstream	7	7	7	1	3	2	8	4	7	2
CTCTTTGGCACATGGG	alt_5261_upstream	24	68	44	45	36	33	69	36	69	40
GTTGGCTGAAATGCTA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCAATTTCTAGTTAGT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGGTGGGTCAGGT	alt_5261_upstream	61	103	76	84	92	82	81	72	96	84
TGTAGGCAATGCTGGC	alt_5261_upstream	71	102	78	69	99	59	94	51	114	55
GACATTATTTCTGATA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TCTAACTGCCCCAGCG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTCAACTCGTTTTAGG	alt_5261_upstream	33	37	35	25	54	39	45	24	50	34
ATCAGTCCGGTCGGGC	alt_5261_upstream	1	12	2	1	13	6	10	8	10	4
CTCTCCCAAGGACTGT	alt_5261_upstream	37	44	35	33	58	28	46	28	59	26
CGTTATCGATTTTACC	alt_5261_upstream	2	12	2	1	13	1	9	1	10	2
CAGCGTGTCCTGACTA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCAAGATAACTGT	alt_5261_upstream	109	173	121	97	161	118	162	109	156	88
GTTAAACGGCCTGGGG	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
CGGAAACTCGAACTCT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACCCCTCGCCGG	alt_5261_upstream	17	21	25	16	18	10	30	13	19	18
TTCAAATTGTCTGAAG	alt_5261_upstream	4	9	5	7	8	4	16	4	7	7
GCTTTTAATCTGGGTT	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GGATATAGTTCTTTGA	alt_5261_upstream	4	7	7	2	8	5	6	8	5	3
TTCGCTGTGTTCGTAA	alt_5261_upstream	34	51	32	40	26	33	48	26	42	27
CTCATGCGTTGTCTCG	alt_5261_upstream	15	9	10	11	12	7	17	6	16	9
ATATTGGTCGTGGATA	alt_5261_upstream	24	50	34	38	38	32	58	22	34	21
GGAACGGCTTGTGCGA	alt_5261_upstream	35	28	30	16	34	27	42	27	29	19
CGTGAGAGGCATTGAT	alt_5261_upstream	7	7	13	7	5	9	5	6	11	13
ACGCGGTTCCGGCATT	alt_5261_upstream	2	2	4	1	1	1	6	1	0	2
TGCCAGGAGGCGCTGA	alt_5261_upstream	33	42	41	25	39	26	45	31	52	24
TGGGTAAGGGTTCAAA	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
AAGACACGAGGAATCT	alt_5261_upstream	21	25	24	24	17	15	31	16	40	23
CATGTCCTGCGTCTAA	alt_5261_upstream	7	11	13	8	10	4	13	5	23	6
GAGTCGTCGGAGATCG	alt_5261_upstream	7	5	4	5	6	1	7	0	9	1
ATAGGCCTTTACTTCT	alt_5261_upstream	14	17	12	14	21	7	17	14	18	18
CTCTCCCCTGAACCGT	alt_5261_upstream	4	28	5	13	37	4	38	6	33	5
TTCGACTAATTCGGAC	alt_5261_upstream	9	16	11	9	7	6	9	8	6	3
TCGAGGAAATGTTTAC	alt_5261_upstream	0	0	0	0	0	0	0	0	0	0
GACAATCGAACTGCAC	ref_5858_new	12	25	14	16	29	8	19	8	21	10
GTGAACTCACATTTAG	ref_5858_new	53	58	49	56	67	33	54	41	40	31
CCAACACGCAGAAAGT	ref_5858_new	45	54	53	50	63	35	91	41	84	44
CTGTCAGTTTGTTGTC	ref_5858_new	1	5	3	3	8	2	3	1	5	1
AGGTTCCGTTATCTCT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
CCTAAGTTAGTTATAA	ref_5858_new	51	87	69	59	108	61	97	54	115	39
CCCCGCGTTTTCGTTA	ref_5858_new	6	97	8	7	105	3	81	13	108	7
TCAATTTGCTTCTTCA	ref_5858_new	25	47	33	36	45	30	37	25	45	26
TAGATAGTTGTCTTAT	ref_5858_new	30	27	28	32	34	32	44	14	38	25
CCCACGCCTTCGTCCG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TCTCTAGATCTAGTGT	ref_5858_new	5	22	20	10	22	15	15	8	20	10
AATGCCAAATTGTGCC	ref_5858_new	42	58	56	33	62	43	70	38	79	44
TAAGCGCGTTAGAGGT	ref_5858_new	17	29	26	23	22	23	32	30	28	11
ACAGTATAACTGTTTA	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TCTGAAAGACACGAAT	ref_5858_new	190	229	206	168	237	163	265	151	240	125
TTGAGAGAACTCAATG	ref_5858_new	15	9	12	1	19	8	15	8	10	10
GGTACTTCGTATGCAT	ref_5858_new	68	99	86	64	104	65	110	55	78	50
TGTACAGGAGCTGACC	ref_5858_new	95	112	127	127	138	107	160	103	144	78
GCAGTAGCAGTATCAC	ref_5858_new	13	19	5	10	17	13	15	7	25	13
CCTATATATTCTAGTG	ref_5858_new	6	7	7	3	6	4	8	7	5	3
GTTTCATTTTGACCTA	ref_5858_new	0	8	5	3	4	1	7	5	5	4
GTATCTACCGGTTTAT	ref_5858_new	26	36	41	22	37	17	29	23	38	17
TAGCAATCAGTGGGTC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GTCTTGCATGCTACTT	ref_5858_new	2	3	2	6	4	4	9	4	3	1
TAGAGTATTTAATCGG	ref_5858_new	7	13	7	5	10	2	9	2	9	3
AGTGATGCACCTTCGC	ref_5858_new	21	26	13	18	26	13	24	15	38	7
GTGGCTCTTTGGTAGT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TTAGTATTTTGACTTT	ref_5858_new	61	70	72	68	96	68	97	63	96	64
TGAATAGAACTATCAT	ref_5858_new	23	47	33	23	37	23	60	27	43	20
TTGGTCTCTGCCACCC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TGTCGTATGACTCTAC	ref_5858_new	18	27	42	25	42	36	48	30	36	23
GTTGCTCGGTATCGCG	ref_5858_new	33	41	19	23	42	14	35	28	41	25
CGGAGTCTTAGATTGT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GAGTAAGATTATCCGG	ref_5858_new	39	66	47	42	66	26	55	29	62	44
TACATACTCCGGAGAG	ref_5858_new	1	2	5	1	1	2	3	2	5	0
TTATTCTAGGGCAGGC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GCCGTGATTTTCAGTC	ref_5858_new	1	8	6	4	7	7	3	7	6	9
AATCTGTCTGTGTCCC	ref_5858_new	15	16	14	10	14	13	21	8	14	10
TGTGTAATGAAACTCA	ref_5858_new	41	35	30	24	46	37	35	30	37	16
TCTTCCCACGGCGGGT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GATTCGACCTCGGCCC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
AACTGACTACGTAGTT	ref_5858_new	18	33	14	16	25	14	24	25	33	15
TTTTTGGTTGGGAGGT	ref_5858_new	25	38	32	33	36	26	33	22	42	27
TCCGGCTAGGGCTTCT	ref_5858_new	108	180	151	115	207	112	188	143	180	115
TAGGAATCGGTTGCCA	ref_5858_new	34	43	47	38	52	33	60	26	56	38
TTGTTCATTGGTTCCG	ref_5858_new	28	40	49	23	56	32	41	33	65	24
ACACGCTAGCCTTAAG	ref_5858_new	30	54	45	41	49	36	59	42	74	38
GATTACTCTAGCGCTC	ref_5858_new	17	38	14	26	33	20	37	16	37	15
CTATGACCTTACGTAA	ref_5858_new	59	99	66	47	74	56	89	35	84	56
TCTTACTCTCAGGACC	ref_5858_new	23	46	39	34	59	29	49	20	40	32
TCACGTTTCCCGGATC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TGAGTTCGTACTTGCT	ref_5858_new	129	205	179	151	209	132	255	137	204	135
TCTCGTCCTTATCGTC	ref_5858_new	17	21	21	10	27	13	23	14	30	12
ACGCTAAAGTTGGGTG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GTCCGGCCTTGACTTC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
ATGATAATGTACTTCC	ref_5858_new	12	12	17	8	12	8	19	21	18	8
TGGAAGCCTCCCAAAA	ref_5858_new	0	0	0	0	0	0	0	0	0	0
ATCTCGGAACCCTGGA	ref_5858_new	13	17	9	14	21	15	11	10	16	11
AATGCTTACATCCGCC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
AAGTTCTAGGTCATTT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TTCTTATTCCGGAATT	ref_5858_new	1	6	3	1	3	1	4	4	3	3
GGGGGTGGTCAGATAC	ref_5858_new	35	32	29	29	28	25	32	28	53	14
TCTACTCATAGTCAGT	ref_5858_new	12	14	11	17	16	10	23	2	22	13
CCCGGCTCTCGCGTAC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GTTTCGACCTCGGCCC	ref_5858_new	16	36	26	14	12	18	26	15	31	19
ATATTGTAGGGTGCGG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
ACGACCCAGTTATTAA	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TATGTTTGAGTTATAC	ref_5858_new	48	70	59	51	100	42	90	42	112	46
GACAAGCCTTTGGCTA	ref_5858_new	34	60	34	33	61	46	64	20	56	38
AGGTACTTGCATGAAT	ref_5858_new	46	54	47	30	49	51	71	38	70	27
ACAATCTCCTTGTCGT	ref_5858_new	27	27	25	14	27	15	21	18	26	16
GTCGCTCGGGTCACTG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TGTGTTTGTCTGTAGG	ref_5858_new	7	21	8	8	15	8	21	14	14	15
AAGTCGTGCATAGGCT	ref_5858_new	5	9	5	8	11	4	7	16	10	10
TCGAACCTGCGGTTCA	ref_5858_new	27	39	49	43	51	36	55	29	50	20
CATCGTAGGGGCTAAT	ref_5858_new	17	32	22	12	23	20	24	16	25	12
TTCGTCGCTTGTCCAC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GTATCATTAAGGTTCT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GACTAAGTATAAGTAG	ref_5858_new	92	129	117	105	156	77	142	96	155	83
CGGTCGATGGTTTAAA	ref_5858_new	50	108	91	63	116	64	114	56	100	48
CCGTTCGATTTTGGAG	ref_5858_new	13	34	7	5	36	10	36	7	22	4
GTGTAATCGGCAGTCT	ref_5858_new	36	41	47	31	58	38	57	34	64	45
GTTGCCAGTAGGATCT	ref_5858_new	20	27	30	19	22	25	31	18	36	27
TTTAGGTCTTTAAGTA	ref_5858_new	18	38	35	14	30	20	35	25	37	15
TCGATTGTGTATACAC	ref_5858_new	0	8	5	0	1	3	3	4	2	0
TTTTACCCTTGGTTCC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GAGACCAAGGATTGCG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TCGTCCACCGCTAATG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TACACGGCCCTCCCAT	ref_5858_new	23	27	26	12	32	17	27	19	38	11
GGCACTGGTTCCTATG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TGAGTTACTCCACGGG	ref_5858_new	26	37	23	18	39	22	32	20	31	23
CGACGATGGGCGCAGT	ref_5858_new	11	18	20	15	20	22	25	11	27	17
TTTGCGGGACCACGAA	ref_5858_new	5	7	2	5	11	4	5	4	7	9
TATCATGCCTTTCTGG	ref_5858_new	62	167	96	90	193	85	180	81	169	69
GACTTATCCATCGAGC	ref_5858_new	6	8	9	7	9	5	6	2	12	6
CTGAGCTGTACTCACT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
CCAGTGTGTACATTGC	ref_5858_new	14	41	15	18	46	18	38	22	38	13
CGCGAATTAGGATTTC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
AGGGCATTTAAGGTAT	ref_5858_new	13	9	7	5	15	12	14	11	12	7
ATCGCGGCTATCGCAA	ref_5858_new	4	15	6	5	10	9	10	7	12	9
AAACTTTTGTGACACG	ref_5858_new	50	63	66	43	71	43	60	48	79	41
AAACTCCGTCCTTCGC	ref_5858_new	0	0	0	0	2	0	0	0	0	1
TTCACTGCTGTACGAT	ref_5858_new	14	13	10	9	9	13	19	13	20	13
GCATAGCCTAGTCGTT	ref_5858_new	39	61	54	48	56	37	74	43	62	35
CGTTCAAATCCACTTA	ref_5858_new	0	0	0	0	0	0	0	0	0	0
CTAATGGATACCTGTC	ref_5858_new	52	80	60	66	89	63	73	53	90	63
TGCTCGACTTAATACC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
AGCCGTTTGATCGTAT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TATTCTTAGTGGTATG	ref_5858_new	31	25	32	33	36	20	32	15	38	19
GAGATTAAATCTTATT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GAACCGTCGGCTTACA	ref_5858_new	61	84	98	76	105	74	96	66	120	72
TTCCGTAGTGCATAGA	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GCCATACTCGTCGCTT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TGTAACGTCGTTCATC	ref_5858_new	0	0	0	0	0	0	0	0	0	0
AGCCGTCATAGGCTGT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TACTTGATCTCGTAAG	ref_5858_new	27	24	19	21	29	15	30	15	31	19
ATCATACAGCGCGCAT	ref_5858_new	35	57	36	30	45	36	46	24	65	27
TCGGTCCGGCGAACTG	ref_5858_new	5	5	9	6	7	7	3	3	11	4
CTTTGGTGCTGCCCTC	ref_5858_new	19	19	18	20	20	15	29	7	25	18
CCTGCTTAGTGCTAAT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
TCATACAGCGAGGCCC	ref_5858_new	17	27	21	27	37	17	35	24	33	18
TACTTGTTAGGACGTT	ref_5858_new	7	3	9	6	5	5	8	4	10	4
AGGACACCCGTATAAT	ref_5858_new	2	4	6	10	8	3	15	3	12	4
GTTTATCAGTCCCGTT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
GTTGAAATTTCGTATG	ref_5858_new	42	46	39	38	50	25	52	29	52	32
GGAACCAAGATGACAT	ref_5858_new	34	57	56	36	66	27	50	28	52	35
AAACATTCATGTAAGC	ref_5858_new	113	147	141	139	144	118	148	133	163	128
CTTACTCTATTTACTC	ref_5858_new	3	10	8	3	4	4	8	4	7	3
ACTAACAACATGCCTA	ref_5858_new	15	40	34	28	38	12	36	28	36	18
ATCCGTATTCATCGTA	ref_5858_new	80	103	103	82	111	69	115	81	91	67
GGACATATAAGCTGCA	ref_5858_new	13	19	13	25	26	18	38	26	25	20
TAGGGAGAACGCGCTA	ref_5858_new	0	0	0	0	0	0	0	0	0	0
CCCCCATCACGGCGGT	ref_5858_new	0	0	0	0	0	0	2	0	0	0
TTCTCTGGTTAGAAAC	ref_5858_new	14	37	20	11	33	10	36	11	31	12
CTATTTAAGTACTCAG	ref_5858_new	17	49	40	33	38	20	40	19	38	29
CGACCGGGCTAGGCTA	ref_5858_new	15	16	17	14	30	14	21	17	32	16
GCATGCCTCCATAAGA	ref_5858_new	9	12	14	19	15	5	16	8	7	8
ATACAGTCGAGGCACA	ref_5858_new	9	8	4	6	13	4	10	6	8	3
GCAATGGATTCGTGAG	ref_5858_new	0	0	0	0	0	0	0	0	0	0
CCATAACAGGTGCTGT	ref_5858_new	37	49	26	18	46	28	36	14	53	23
GAGTCAATGACGTCAA	ref_5858_new	34	47	44	39	47	38	43	37	50	42
GGGTTCCTCTGGCCGT	ref_5858_new	9	11	11	9	16	9	16	8	16	10
CCAGCTGAATTCAGTT	ref_5858_new	10	29	13	19	50	13	49	10	55	12
ACGTTAGCGTCTGGTG	ref_5858_new	37	54	35	32	58	33	53	39	56	27
AGACAATCGTCGACCT	ref_5858_new	7	3	10	9	18	5	12	9	7	5
GTTGGCTGCCGGATGA	ref_5858_new	2	1	1	3	5	2	2	3	3	2
CAACTTTTAGGTTTAC	ref_5858_new	4	12	3	8	9	8	9	9	9	2
TATCCGGCCATTATTT	ref_5858_new	0	0	0	0	0	0	0	0	0	0
AATCGTTTAGTGATAC	ref_5858_new	12	34	26	10	24	23	38	13	37	15
GCCGGTTGAGTGCATC	ref_5858_new	2	7	5	7	7	2	3	4	6	5
AGTCAGTTTGGGGTGG	ref_5858_new	6	17	8	8	10	10	9	8	9	3
AGCACCTCAGCCGTCT	ref_5858_new	25	26	28	28	26	19	36	18	37	24
CGAGTCCACGTTTTGA	alt_1224_negative	40	46	47	51	51	40	68	38	61	44
CTCGCACGGTCGCGAA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TGGCGGGGAGTTCCTG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GCTTGGGTCCACACCA	alt_1224_negative	14	36	32	24	34	24	39	15	41	9
GTCAGGGCACTTGATG	alt_1224_negative	61	104	79	53	109	49	84	67	113	50
GGTAGATTTACTTACC	alt_1224_negative	8	104	8	12	140	6	126	2	114	7
ATCCGAGTCTCATGTT	alt_1224_negative	2	9	10	8	5	8	10	6	10	6
CATCGAGCTAGTTTTG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GAACGATATGCGGGTG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CGCCTTTATTACTTAG	alt_1224_negative	108	182	127	120	186	112	187	106	193	94
ATTAGCACCTCGGAGG	alt_1224_negative	38	35	44	37	58	32	50	34	46	20
GCGCGTTGATGTGCGT	alt_1224_negative	5	9	7	6	4	3	2	3	7	6
TAAAAGATTCAGCTTT	alt_1224_negative	82	102	108	76	130	75	92	71	128	71
GATGTATTTCACTCAT	alt_1224_negative	28	63	51	59	68	26	54	35	74	35
CTGGTACTCTTTTCTG	alt_1224_negative	18	24	17	19	21	11	22	6	28	11
ACGGGGTTAGTACATC	alt_1224_negative	72	115	78	67	90	57	114	82	119	56
CGCTATTTGTATATAA	alt_1224_negative	12	12	12	2	9	11	17	6	11	9
AAGACTACTCAAAAAA	alt_1224_negative	12	29	35	35	53	26	33	28	36	30
CGTAGTTTAGAGTTTA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CGGGGCGGAGCCGTTG	alt_1224_negative	1	1	0	1	4	0	1	0	4	1
GTGATTGTAGTTGCAG	alt_1224_negative	3	1	4	1	0	2	3	1	4	1
ATACGTACGGTCTAGA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
ATCGGCTCTTTGATGC	alt_1224_negative	33	44	39	28	60	28	48	31	42	25
CTCAGCTCTGTAGTGC	alt_1224_negative	11	10	27	15	22	17	18	12	20	14
GGTAAGAGGATATCAC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
ACAGGCCCCGCCAACA	alt_1224_negative	36	42	51	50	56	49	48	35	57	27
TTTAAATAAACACCAT	alt_1224_negative	107	132	113	101	144	90	138	78	136	92
TCTGTAGTTATACTTA	alt_1224_negative	5	35	3	3	24	0	29	1	39	1
CGTATGGGTTATCGCA	alt_1224_negative	55	65	70	56	82	50	75	41	73	38
TATTTTAAGTGCGGCT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TATGTTTTCCGCCGTG	alt_1224_negative	24	27	20	19	28	17	37	25	41	21
GCTTGTTTCCGTTCGG	alt_1224_negative	1	4	0	3	4	3	4	2	0	0
TTGTAGTCCCGCTATC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CTCTCCCATAACGCCT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TTTTGATCAAAGTCGA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
ATGTTCAACTGGGCAA	alt_1224_negative	63	99	70	68	96	54	103	50	105	54
ACATACTCAATTACGG	alt_1224_negative	45	52	44	40	70	31	46	36	56	34
GTCCAAAGTCTCTTTG	alt_1224_negative	4	3	0	5	4	3	3	3	1	2
TACACGGGTTGTGCCA	alt_1224_negative	31	84	34	30	106	24	81	32	105	23
TCGCCTGAGTCTGCCG	alt_1224_negative	32	67	64	60	71	44	74	42	61	50
ACTGCCAAGACTTATT	alt_1224_negative	4	7	3	5	8	5	5	7	7	8
TCTGCTTCTCGTTTGG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CCACAGCATCCGTGGA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CTGTACCGCGTAGCCT	alt_1224_negative	77	81	54	47	97	56	100	49	101	65
AGAGATTCGTTGCCAG	alt_1224_negative	47	84	48	56	66	47	67	58	77	47
ACAGATGATCAAAGAT	alt_1224_negative	150	191	166	121	146	127	198	119	174	121
TGTTTGGAATCGTTCT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GCTTGAGGAGGAATCA	alt_1224_negative	29	33	36	22	30	17	38	15	47	22
CCGCTAATGATGCCTT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TCAACAACCATCGAAC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GCTCAGCCTTGCTTGA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CACTCTTACATGCCGG	alt_1224_negative	15	26	20	23	30	17	27	9	37	16
CACTTCGTACCTGATC	alt_1224_negative	16	16	20	15	28	20	14	13	21	24
CTGCTCCGTTTAGTTT	alt_1224_negative	10	16	12	13	7	17	26	5	14	10
TATTGTCACATGCGGG	alt_1224_negative	27	37	36	37	30	23	40	42	26	23
TTTTGCGGTCTATCCA	alt_1224_negative	8	19	12	19	15	13	19	8	16	13
TGTTAGTGGTATACCA	alt_1224_negative	28	50	49	41	48	42	59	34	62	30
TGGTCACCGGACAAGT	alt_1224_negative	13	10	4	5	9	6	7	6	13	3
CCATAATGTAAACGTT	alt_1224_negative	23	41	38	26	57	27	62	15	53	19
ACTTGAGATGCAGTTT	alt_1224_negative	18	26	15	16	20	20	19	8	22	20
GAATGTTGCGGAATAT	alt_1224_negative	6	4	10	9	10	7	4	1	8	6
TTAAAATTTCTAATGC	alt_1224_negative	4	6	7	6	7	3	12	3	11	5
GGGGATACATGAGTCT	alt_1224_negative	21	25	15	19	18	15	26	20	24	8
TGTAAACCCGTTAGCT	alt_1224_negative	8	13	14	11	13	8	11	11	9	3
GCACCACGGCATTACG	alt_1224_negative	12	28	22	14	34	22	35	22	27	13
TGGGCTGAAGGTCTCT	alt_1224_negative	9	6	2	3	4	2	2	2	5	3
TTTTCTTCCTTAAACC	alt_1224_negative	257	299	268	263	296	251	292	188	304	187
GTACACTCACCATGAG	alt_1224_negative	5	14	5	10	19	7	16	9	10	8
CGCATCTTAGTACACC	alt_1224_negative	0	2	0	0	0	2	1	0	0	2
TATTTAGTCGTCTGGG	alt_1224_negative	17	24	13	16	32	20	19	13	18	15
CTACATAGTCCTATGT	alt_1224_negative	27	9	16	22	31	10	23	9	21	12
CGTATACTTATGTTCC	alt_1224_negative	14	19	14	3	16	5	10	13	8	14
AACGTTTTCAGTTTCT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GTATCCCCCAGCAATG	alt_1224_negative	71	102	81	55	101	83	129	73	125	60
CACTTTAGGTTGCCGG	alt_1224_negative	22	41	50	38	44	28	44	31	63	23
GAACCGATGGAAAGAT	alt_1224_negative	12	11	15	8	16	13	11	10	20	8
TTGCCTCTGCATCATT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TAGCGCTGCGAAACCG	alt_1224_negative	57	70	65	36	74	41	78	46	83	53
CCACTGTCATCTATGG	alt_1224_negative	71	93	69	78	96	74	89	62	100	66
AGTAGGGGGTCCTGGT	alt_1224_negative	36	52	45	44	39	37	46	36	41	38
CATTAAGATAGCTCCT	alt_1224_negative	25	25	30	31	35	22	35	21	38	17
TTCGGCGCATGCGGCC	alt_1224_negative	22	12	14	10	21	12	24	14	17	5
GGGGTATTGCGCCATT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TCACGCGCTAGAGTTC	alt_1224_negative	46	47	48	34	48	28	56	29	80	27
TCAAATTGCAGCCTCA	alt_1224_negative	18	18	20	15	20	20	24	13	27	10
CGTGTACCATTTAGCA	alt_1224_negative	16	23	19	18	33	21	24	18	30	18
CATAGCAGATTCAACA	alt_1224_negative	46	71	61	57	77	49	79	47	81	37
CCAACCAGTCTTCCTG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CTATTCTTGGGCTTAT	alt_1224_negative	57	59	46	28	80	38	91	41	78	31
CATCCGCGGGCCTGGA	alt_1224_negative	30	38	31	31	46	23	38	26	61	15
CATTGTTCACTATGAT	alt_1224_negative	42	54	51	36	77	31	61	40	63	35
TCTATATCTTTTATCG	alt_1224_negative	46	77	56	45	74	60	62	42	56	45
ATGACCATAACAGTGA	alt_1224_negative	94	145	131	93	134	100	157	69	180	92
GCACAATCGTACCGTA	alt_1224_negative	1	10	3	1	1	3	5	1	7	3
CTTATCAGTTTCCCAA	alt_1224_negative	29	21	24	43	46	20	38	17	32	15
TTGGAAAAGGGCTCAA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GGTAAGGTAACGCTAT	alt_1224_negative	18	12	25	13	18	19	23	18	21	16
CTTAGAAATTTCTGAG	alt_1224_negative	6	9	4	12	7	4	11	7	6	4
TCACACTGTTATTCTT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GCGCTATGACTGATGG	alt_1224_negative	1	3	6	3	5	1	5	3	5	9
CTACTTGTCTAGGTTC	alt_1224_negative	32	62	57	55	78	38	65	45	64	43
AGAGTTAGACTTGGTA	alt_1224_negative	47	67	49	33	48	46	46	27	73	25
AGGTCAGGCTCGGGCG	alt_1224_negative	7	7	3	4	8	3	7	2	3	4
GTCCCTAACATGACCT	alt_1224_negative	10	26	14	13	26	22	19	25	31	18
GGTATTGAATGTGGAG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TCACGCCCATTGATGA	alt_1224_negative	10	20	22	22	24	13	31	11	26	12
CAGTGCCTGCTCTCCA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TAGGTTATCCTATATT	alt_1224_negative	26	24	16	22	12	10	22	21	24	14
TAGAGAGGCTCGATAC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TCCCGGTTCACACCAT	alt_1224_negative	66	137	68	43	190	47	165	41	177	46
CTCGTATACGAAGCAA	alt_1224_negative	13	33	20	10	33	19	20	18	27	27
TCTCAGTTTGACGGGA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
AACACAGGTTTGGGAT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TGTGGAGGCGGTTTTT	alt_1224_negative	3	2	2	2	4	1	4	2	2	2
GCCCTCAATTTAGACA	alt_1224_negative	32	66	53	34	70	35	47	34	66	32
GCACACCGACCGTAGT	alt_1224_negative	32	82	52	43	88	42	111	48	106	53
GAGTTTGATCAGCGCG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
ATCTGCGTATGCGGCC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CTTTCCGTTTTCGAGT	alt_1224_negative	6	16	15	8	24	3	20	7	18	7
TAAGGGTCTGACACAA	alt_1224_negative	9	10	4	2	3	6	10	6	9	10
TACTATTAACTTGGCC	alt_1224_negative	13	22	13	10	16	7	5	10	22	8
AGCGGATGTAGGACAT	alt_1224_negative	44	67	59	47	73	43	86	52	77	49
AGATGTCAATCTTTAT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
AAAACATCCTTTTTTT	alt_1224_negative	1	2	3	0	4	0	2	1	1	0
TACTACGAAGGGCAGT	alt_1224_negative	119	174	179	171	223	129	208	144	192	114
GCCATCCGCTATTCAT	alt_1224_negative	25	45	33	27	47	28	51	26	64	24
CGCTCAATTCCTCGAG	alt_1224_negative	25	32	19	22	26	18	27	11	25	14
GCGCGGTTATGTACCT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GGCTCTACTGCGATCG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CCTCGCGTAAGGCGTT	alt_1224_negative	8	27	18	16	26	10	29	9	21	15
AGTTGCTCTCCGGTGC	alt_1224_negative	2	7	3	5	16	2	9	7	10	3
TTGATGTTGACTTCAG	alt_1224_negative	10	11	14	5	12	7	20	11	12	2
GGGAGGATGCCCCTAT	alt_1224_negative	19	19	19	13	24	16	28	14	19	18
AGCGTTAAAATTTTTA	alt_1224_negative	41	79	52	34	60	31	78	38	82	30
CCAAATACAGGTGTGT	alt_1224_negative	24	31	25	26	35	17	35	11	26	22
CTATAAGCGTGCGATT	alt_1224_negative	16	12	8	14	16	9	11	8	17	8
TTTACTGCATGAGCGC	alt_1224_negative	39	58	52	33	55	29	55	39	68	36
CTTGTCTTCTTCCTAT	alt_1224_negative	22	23	30	25	19	25	28	18	41	21
GCAGACACCCCTCATC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CGGATCATATCCTCTC	alt_1224_negative	53	36	37	44	51	32	46	25	66	30
ACTGGTCCGTATCGGT	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GTTTCAGGTTGCCTAT	alt_1224_negative	25	32	38	25	41	28	56	29	52	18
GCGAGAGACGACCAGG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
AGCAGCAACAGTTTGT	alt_1224_negative	8	11	11	6	11	8	8	2	8	2
GCACCGGGTATAGTGA	alt_1224_negative	1	4	3	0	5	1	1	1	1	3
CTACGGCATCCTGAAG	alt_1224_negative	43	47	50	43	51	50	64	38	53	42
CCAAATTAGCTCCGCA	alt_1224_negative	10	13	5	6	21	1	21	5	16	5
GACAGGGCACTTGATG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
ACCTCCCATGATTTAG	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TCCTTGTCATTCTCCC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CAGTAGTGAACGTTTC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GGTCGATACCGCACAT	alt_1224_negative	183	252	262	205	224	176	289	155	249	143
TGCCAGCCTGACGCTT	alt_1224_negative	6	7	8	3	5	1	4	6	4	4
TCGCCTGTATGCGTGT	alt_1224_negative	4	6	6	9	8	5	9	5	10	4
ACATATTTTGCTTGTC	alt_1224_negative	50	88	64	61	72	67	90	61	85	53
CACTGTGCTCAGAGTT	alt_1224_negative	5	8	14	3	14	0	8	7	11	3
ACGCGAAATAGGCACC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CTCAGATGACCCTGAT	alt_1224_negative	0	0	2	0	0	0	2	0	3	0
TACGAGATTTGCGGAA	alt_1224_negative	17	13	16	10	17	5	12	11	17	9
TTATTTGGAGTATTTC	alt_1224_negative	2	1	2	6	5	2	4	2	3	1
CCAATCAATCATGGGC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
GACTCGACCTGGCTGG	alt_1224_negative	9	16	20	17	18	19	23	18	20	18
CTACCCTGGGTGCGTC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CATGTGCCTTGGCATC	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
CCCGTCGTAGGGCGCA	alt_1224_negative	5	21	5	6	18	4	18	4	17	5
TTCCTTTACGTACTGA	alt_1224_negative	9	37	15	23	32	7	37	17	49	2
TGTTTTAAGCAGGTCC	alt_1224_negative	6	5	6	9	7	6	6	6	8	8
GTGCCCTTCTGTTACA	alt_1224_negative	0	0	0	0	0	0	0	0	0	0
TCCTTATGGTGCAATG	alt_1224_negative	7	8	7	8	25	9	18	9	11	9
GCTCATAATTGTCCCT	alt_1224_negative	1	3	0	2	2	0	6	0	3	2
CCGCGCGGCTTTGGGG	alt_1224_negative	23	41	26	30	47	21	36	31	47	11
AGGTAATATTTTTTCT	ref_2618_fdr	740	213	981	848	209	706	206	750	210	706
TTCTGGGTTACGACCT	ref_2618_fdr	51	35	76	61	39	38	45	35	43	47
TACGCCGTGTCTTCTG	ref_2618_fdr	371	119	448	425	133	320	77	344	135	292
GCATGTAGTTCCGTGG	ref_2618_fdr	25	7	34	28	15	21	25	31	12	26
TGACGTTTGTACATCG	ref_2618_fdr	35	8	47	21	15	40	18	31	17	26
TTTTCGACCAGACCCT	alt_2618_fdr	254	75	294	225	79	233	62	225	99	224
CGCTTGGAGACTTATC	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TCTTAGTTTCGCGCTC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
CTACCGGAACGATGGG	ref_2618_fdr	23	8	24	12	10	19	9	11	8	21
TTAATGTGGTCAGGGC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGCGCGCCGTTCC	ref_2618_fdr	224	71	262	247	76	255	81	205	72	199
GGAATCCCAGTTGGTT	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TAAATTCAAGCCCTCT	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TTAGATGGCGTCCGCT	ref_2618_fdr	71	29	91	89	34	60	23	95	29	88
GGGAAGTTTTTGGTGC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCCTTGCACACGA	ref_2618_fdr	15	7	37	19	12	24	8	24	11	23
CACTTTGGGTATCCGT	ref_2618_fdr	0	0	1	2	3	0	0	1	0	0
GAGACACGTGCTTTTA	ref_2618_fdr	120	49	154	137	42	126	46	92	34	110
AGCAAAATGATGCCCC	ref_2618_fdr	19	5	15	18	5	15	3	14	7	13
GCGAGTGGAGCATGGC	ref_2618_fdr	304	83	386	335	90	307	128	288	92	256
GGTGAGGAACGTATTT	ref_2618_fdr	137	44	191	130	39	136	72	119	45	124
GGGAAGTTTTTAGTGC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCTGGGTTGTGCC	ref_2618_fdr	27	9	28	29	7	14	19	34	5	31
ATTAGTCACCGCACAA	ref_2618_fdr	571	193	572	561	164	505	159	493	197	482
GGCATTTTAACTAGCA	ref_2618_fdr	580	184	711	627	204	620	196	525	186	521
CCCGTGTCATACTCAA	ref_2618_fdr	2	6	4	2	3	0	5	6	10	4
GCGTGTACCGAGATCT	ref_2618_fdr	127	51	193	139	59	129	60	143	56	142
TGCTTTGGTATGTTGA	ref_2618_fdr	52	20	81	63	18	61	16	58	28	56
GGGAATTGTTCGGTTG	ref_2618_fdr	75	23	101	105	25	80	23	78	23	68
TGCCATAAGACATTGC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TATTAACTTGGGGTCA	ref_2618_fdr	97	29	111	94	41	85	41	78	32	78
CTGAAGTGGGAATACT	ref_2618_fdr	489	239	561	513	195	443	210	462	205	419
GAGTGTTGTATATCTC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
GTCAACTTTGAGATGG	ref_2618_fdr	101	35	137	117	42	91	40	83	46	108
TCAGGGGCCCAGGCCT	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGTCTACATATGT	ref_2618_fdr	70	28	89	91	33	72	28	78	33	75
GCCGAAGCTGTTATCC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTAATACATCTGG	ref_2618_fdr	0	0	1	0	0	0	0	0	0	0
TGCGAATCAGGGAGAA	ref_2618_fdr	87	25	110	97	36	94	36	66	27	63
TCTTACGTGCGAGTAA	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTACGGCAGATTT	ref_2618_fdr	74	15	86	84	27	58	26	52	17	49
CCTTCATTCAAGACAG	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTGGAAGGACCCG	ref_2618_fdr	113	43	123	96	40	94	39	116	36	91
GTGGCTATAATACCCC	ref_2618_fdr	51	19	59	47	26	46	29	36	23	54
TCGTACATGTTTATAT	ref_2618_fdr	22	7	20	16	6	15	9	12	5	13
TCCTTTTGTGAACAGC	ref_2618_fdr	106	30	160	130	48	122	49	118	47	115
TTTGTTGCCAATACTC	ref_2618_fdr	128	33	141	125	38	115	32	93	36	99
TCTGTTCTTGGCGGCG	ref_2618_fdr	69	27	94	81	26	87	38	58	41	67
ATTCTCGTGAACGGGA	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
ATCATGAAGAAATCAT	ref_2618_fdr	175	54	240	201	77	174	65	166	75	199
CCCTCAGAGTGGATGT	ref_2618_fdr	97	136	197	161	99	139	141	131	128	93
CATCGGCTTCCGTTTC	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
GTCGACGTATTGCTCT	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGGAGATGTTCAA	ref_2618_fdr	104	33	118	102	31	105	54	112	43	98
GATCCGCTAAAACGGT	alt_2618_fdr	92	22	93	102	26	76	27	74	23	78
TGAGGCACACGCGCCG	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTTAAAATCAGGG	ref_2618_fdr	340	106	442	411	109	341	124	335	123	279
TATATATGGCCGGTTT	ref_2618_fdr	19	9	24	26	4	24	6	19	9	19
GCCAGAACGGTTCTAT	ref_2618_fdr	549	175	631	640	214	537	207	578	215	502
GTTTAGCGTTAGTTCC	ref_2618_fdr	692	219	810	699	228	651	223	595	226	600
TACTCGGTGATCTTCT	ref_2618_fdr	66	27	93	102	23	73	17	72	30	76
TGTCGACTTCCGTTCA	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TTGGAACACTCTTACC	ref_2618_fdr	296	118	394	343	123	328	161	228	148	271
CCGACTTGACTTTGTG	ref_2618_fdr	22	5	26	24	1	21	5	21	9	14
GCACCTCGTGTCCGTT	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
CCAACTGTCTACCTGG	ref_2618_fdr	17	12	37	26	10	26	16	16	14	28
CATCGGTTATTCCATA	ref_2618_fdr	364	104	447	335	101	326	109	298	106	319
TGGCTGCGTTGCCTCC	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTTTAAAATACTA	ref_2618_fdr	195	38	178	185	56	154	64	165	53	188
GACACCATGATACATT	ref_2618_fdr	226	85	248	225	70	208	71	201	94	183
ATAGTAGGTGCGCTTC	ref_2618_fdr	39	8	42	36	15	41	11	36	20	39
ATATAGGATTTGAGCA	ref_2618_fdr	143	46	188	192	49	150	49	137	43	139
CAGGTCGAAGGGCATG	ref_2618_fdr	6	8	15	17	3	15	7	16	8	12
GCTGCTTGCTGATTTT	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTGGGCTGTGAT	ref_2618_fdr	99	40	92	110	27	93	32	103	42	77
TATGCCCTACACATCT	ref_2618_fdr	69	19	84	82	23	66	22	58	14	39
TTGGGCCAAAGTCAGT	ref_2618_fdr	20	9	20	18	7	17	7	21	4	22
AGCCTGGTACTCTTCG	ref_2618_fdr	239	97	308	237	118	194	118	223	104	219
TTCATCAGCTTACGCA	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCAGGGATCTGTT	alt_2618_fdr	201	61	239	180	56	215	70	198	85	182
TGGATGTAATGCTCTT	ref_2618_fdr	73	18	73	85	23	73	22	73	32	54
CATTCGGTGGAAATCG	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGCTTCCACAGTT	ref_2618_fdr	75	22	98	83	29	70	31	70	21	62
TCGTCCATATACGAGT	ref_2618_fdr	111	35	114	94	27	92	39	88	55	90
GGTGGTTTTTCTTATT	ref_2618_fdr	388	119	467	402	136	404	139	353	133	352
TATCGTATTAATTACT	ref_2618_fdr	281	78	341	284	82	240	82	274	84	274
GATGGGCGTCCGCGTT	ref_2618_fdr	107	37	95	110	38	97	37	84	35	100
CGAGCTTAACCTGTCA	ref_2618_fdr	64	37	78	66	25	59	22	36	26	48
CATCCATCGATGGGAA	ref_2618_fdr	136	34	146	156	50	122	29	120	46	127
CTCTATTTTACGTCGG	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TACTATACGGATATGT	ref_2618_fdr	76	21	80	84	21	66	29	95	21	85
TGGGGGCCGTAGCAGT	ref_2618_fdr	236	58	291	238	62	223	61	214	61	198
AAAGCCCTCCTGCTGG	ref_2618_fdr	64	18	70	68	13	46	24	72	14	45
CATGGGTGGTGAAACA	ref_2618_fdr	0	0	0	0	0	0	0	0	0	0
TTAACATCTTTGAATC	ref_2618_fdr	244	72	335	304	112	246	82	244	98	225
TTGATCGAGATATGAA	ref_2618_fdr	281	75	302	298	87	255	104	252	105	251
TCATCGTATCAGTTTG	ref_2618_fdr	571	239	718	588	229	573	269	548	253	477
TGTATGATCGACTTGG	ref_2618_fdr	19	8	21	16	3	15	3	18	8	24
TGCACTAAAGGTCCGC	ref_2618_fdr	124	46	171	130	45	124	51	115	48	117
ACCGCCAGTGGATTTT	ref_2618_fdr	5	10	12	10	0	7	4	16	4	9
CCCGCACTCCGTATAT	ref_2618_fdr	103	32	130	101	46	99	44	92	31	95
GGTGCACATCTGCTCC	ref_2618_fdr	99	93	154	92	99	100	96	91	100	84
CCGGTCCTCCTCACCG	ref_5612_new	10	20	15	7	28	8	22	10	24	9
ATCTCCTCGTGGATTT	ref_5612_new	60	92	78	62	83	49	88	62	85	63
AATTGAGTGTAATTTT	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CTGCTACGAGATGCTC	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CAGAGCTCCCTTTCAG	ref_5612_new	23	34	30	21	23	25	30	16	25	23
TGTATTACTCCGCCGG	ref_5612_new	7	9	7	10	9	15	11	6	12	2
GCACTAATCTACCGGG	ref_5612_new	0	0	0	0	0	0	0	0	0	0
TTACTGACTTTTGAGG	ref_5612_new	29	59	50	29	59	34	46	34	79	28
TAGCGACGTGACATAG	ref_5612_new	14	20	11	9	12	7	11	12	26	12
GCCATCACCACTATAT	ref_5612_new	28	37	36	45	38	28	41	40	30	31
GTATTTACTAAACCCA	ref_5612_new	22	29	23	29	23	30	21	20	31	15
TGTTCTTGCTGGTCCC	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CGTTAACACCTGCGCG	ref_5612_new	89	94	60	50	93	54	111	61	93	73
ATTTACATATTTAAAG	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CGGGTGAATAGCCGAT	ref_5612_new	0	0	0	0	0	0	0	0	0	0
ATGAGGCGAGGATTGC	ref_5612_new	17	14	20	18	8	16	13	5	13	16
ACTTCTCAGAGAGTTT	ref_5612_new	3	21	27	22	16	15	27	10	17	14
TAAATAGCGCATCTGT	ref_5612_new	10	20	9	6	19	9	24	13	18	5
GGTATCTCGAGTCTAA	ref_5612_new	16	22	45	24	27	28	34	19	32	13
TGTTATTGATTACTTT	ref_5612_new	79	100	88	82	105	71	85	56	101	70
AGCATTGTAGGTGGCG	ref_5612_new	58	65	61	62	49	43	59	39	67	41
TCCGAATCCTGTTGCA	ref_5612_new	93	114	108	110	143	108	150	87	152	103
GATTTGCTTCGCTATG	ref_5612_new	7	17	16	14	7	8	13	15	10	10
GATTCCCTCCCTCTCG	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CGCCGCATCTGTATGG	ref_5612_new	15	16	23	20	21	24	24	22	29	18
TCGTCATTGACGTGCA	ref_5612_new	0	0	0	0	0	0	0	0	0	0
GAGTGCAACGAACGTA	ref_5612_new	6	16	18	9	10	11	13	10	12	10
TTAGCTACTTACTGGG	ref_5612_new	15	20	9	19	15	21	21	12	25	10
TCAAGGTGGTTGCTAG	ref_5612_new	16	29	36	15	18	17	29	17	38	20
AGTCAACGGACCTGTT	ref_5612_new	1	1	0	1	2	0	2	4	0	0
TTGTCAGGGGCAATGG	ref_5612_new	11	15	16	17	8	6	15	14	12	11
ATGTGAAAGCTCCATT	ref_5612_new	4	6	5	4	5	3	11	6	6	3
ATTCGTGTGAGTTTTC	ref_5612_new	20	23	13	11	12	13	23	15	16	17
TTATGGTCATTGCAGG	ref_5612_new	19	15	29	18	23	9	21	15	20	14
AACGTGTGGCTCGAGG	ref_5612_new	1	1	2	0	1	0	0	2	3	3
TATCTGCCATTTTTGG	ref_5612_new	151	166	187	142	161	127	167	158	150	125
CCGGTAAATTCTCCTA	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CCCTTCCCGTCCCGCG	ref_5612_new	9	12	18	14	14	17	18	10	17	8
AGTTTTTACCCTAACA	ref_5612_new	9	16	16	8	18	7	26	11	15	12
CGTTACACCAGATCTT	ref_5612_new	71	88	123	92	86	72	87	66	123	63
GAGGTCGCTTGTACGG	ref_5612_new	17	25	12	10	32	6	26	3	38	14
CGGATGTGGTACCCTC	ref_5612_new	0	0	0	0	0	0	0	0	0	0
GACGCCACTGTGTCTT	ref_5612_new	8	12	12	9	9	11	11	12	9	14
ACAGTGTGCTAACTGT	ref_5612_new	63	102	136	91	117	81	122	80	115	80
TTGGCAGGGTGTATTG	ref_5612_new	23	39	39	33	45	40	40	30	49	33
AGGCACGCGACCTGAT	ref_5612_new	52	74	78	62	63	60	88	57	81	57
GTGTGTGTTCTTCTAC	ref_5612_new	34	49	47	53	47	52	44	39	40	46
TGGCATAAGCGTATTC	ref_5612_new	0	5	1	3	4	0	0	2	0	1
CAATCTACGGATTACG	ref_5612_new	0	0	0	0	0	0	0	0	0	0
TTGCACGATTCCCTTG	ref_5612_new	0	5	9	3	5	2	10	2	1	4
CTTCCCTTACTCGATA	ref_5612_new	96	127	140	84	121	101	155	111	141	121
GTGAATCTGCCTCCTG	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CCGCTGTTCGGACTCA	ref_5612_new	28	36	25	28	31	29	26	28	35	9
TTCGGTGTCCGATCAT	ref_5612_new	10	17	9	13	10	8	9	7	4	8
TTAACTGATATATTAA	ref_5612_new	12	29	18	20	22	20	10	12	24	14
AAATCGTCGCACGGCG	ref_5612_new	69	99	77	82	84	70	68	58	99	61
GGGCTCCATATCACAA	ref_5612_new	50	55	69	39	60	51	58	38	56	41
CCAAGAACCGTTGTGC	ref_5612_new	2	8	3	6	6	0	8	2	14	3
CCCCGGCACATGGTAC	ref_5612_new	37	64	59	57	59	42	34	40	59	41
TGGAACAGTCAGTTCA	ref_5612_new	29	28	35	18	21	27	24	28	31	21
CCTAACCGTTTTTTGA	ref_5612_new	38	36	53	42	43	41	45	51	49	28
TTTTCGTAGACAAGGA	ref_5612_new	9	8	14	15	11	11	18	13	9	11
TAGTCATCTCTTACAA	ref_5612_new	11	7	8	9	4	7	8	4	3	10
CTTATTTCTGTTCGCG	ref_5612_new	20	16	26	22	34	21	23	21	17	17
TTGCTGTGATTGAATG	ref_5612_new	9	10	11	13	21	1	18	18	27	7
TGTATGTGTCTCCCCC	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CGAGGAGGAGTTTCGT	ref_5612_new	36	60	51	36	52	43	47	37	57	45
AACTACACTCGCGGTA	ref_5612_new	5	15	3	8	9	0	13	4	8	2
TGACGCCTAATTGGTG	ref_5612_new	4	11	8	5	7	7	8	2	8	5
ATCCTGAACGACTCGC	ref_5612_new	1	0	0	0	3	0	2	1	0	1
GATCGGTTGAGTCGAT	ref_5612_new	0	0	0	0	0	0	0	0	0	0
TGGTAGTACTGAGCCC	ref_5612_new	0	0	0	0	0	0	0	0	0	0
TTGACACTACTTGCCA	ref_5612_new	0	0	0	0	0	0	0	0	0	0
TTGCTGACTTTTGAGG	ref_5612_new	26	23	20	15	25	19	33	19	29	18
TGCGCTGAACGGTTAG	ref_5612_new	25	25	23	23	20	29	25	19	34	18
TGATGTTTGCGTCGAC	ref_5612_new	60	78	51	55	48	55	71	52	57	47
CAACGGTGTGGCGGAT	ref_5612_new	54	50	63	42	45	55	33	33	48	41
CCGTCTCAACTAGAAC	ref_5612_new	0	0	0	0	0	0	0	0	0	0
ATGCAACCATGTTTGT	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CGATATTATCTCTCCC	ref_5612_new	38	35	37	39	40	28	31	23	57	28
GTTCTGGATTGGGGAT	ref_5612_new	17	39	20	15	26	16	26	7	21	12
GTGGTTGTGCACGTGA	ref_5612_new	36	50	50	43	50	41	46	43	61	37
CCTTCGCGGTCGTTAC	ref_5612_new	94	96	96	88	157	81	114	71	120	75
ATTTTGAAGGCACTTT	ref_5612_new	0	0	0	0	0	0	0	0	0	0
TTATTTATACTTGTGC	ref_5612_new	4	5	6	3	6	1	6	5	10	5
GCGTTACATTGGGTCG	ref_5612_new	15	14	11	7	18	7	19	16	15	12
GCATTGTCGTGGCGAA	ref_5612_new	13	10	15	10	15	14	10	13	15	10
TGCTTGGGGTGCATAT	ref_5612_new	48	94	57	67	79	49	83	56	80	59
GCCCCCGCGTGTAACG	ref_5612_new	22	40	10	27	19	26	13	23	23	12
TTATTCATGCGATTCC	ref_5612_new	9	9	9	8	6	3	15	6	7	9
TGACATGTCATTGAGC	ref_5612_new	98	140	107	92	119	97	125	94	117	91
CTCTCGGGCATTCCAC	ref_5612_new	14	27	29	16	17	13	33	13	27	13
AGTGGTGCCCGGGATT	ref_5612_new	2	0	5	5	3	5	6	1	4	4
CGGTTAATTGGACCGA	ref_5612_new	11	28	17	18	17	16	28	16	20	10
GGTGGCACTTATCGTT	ref_5612_new	14	19	15	20	20	14	20	21	18	10
TCCCCGCCAGTGTTCG	ref_5612_new	0	0	0	0	0	0	0	0	0	0
GCTCTTCTGTTGTTCC	ref_5612_new	6	8	8	8	7	5	12	3	6	10
TCCCAAGTTGGACTCT	ref_5612_new	0	0	0	0	0	0	0	0	0	0
CAGTGTTACTATCGTT	alt_5177_missing	14	43	18	20	42	12	36	12	40	17
GTTATGTATTTAGTAT	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
TTCAGGTCTTATAATC	alt_5177_missing	1	12	9	4	13	9	20	7	10	2
TAGAGTTCTAATCTCC	alt_5177_missing	96	127	86	71	114	78	127	47	122	80
CAACTATCCTACTCCC	alt_5177_missing	25	73	22	10	101	12	66	11	98	23
TGCTAGCTTCACGTCC	alt_5177_missing	27	57	33	26	45	33	57	24	40	24
GATGAATACCAGGTTT	alt_5177_missing	130	162	140	120	149	110	164	115	167	82
CTAACTCCTCTTTGGA	ref_5177_missing	16	34	21	12	36	14	30	12	29	8
GCCCGTAACCACACCG	alt_5177_missing	26	28	17	20	34	29	39	19	40	22
TTATGTGCGCTATTCA	alt_5177_missing	106	155	109	86	179	87	189	73	181	81
CAGATTGGTTTGCTTG	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
ATGACGTCCGTGGCAC	alt_5177_missing	38	105	59	50	77	48	72	59	89	37
TAATGTGCGCTATTCA	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
GCGTTCCACCAGGAAC	alt_5177_missing	8	11	4	2	11	2	10	5	9	9
TAATATAGTAAAATGA	alt_5177_missing	73	106	94	71	92	65	117	57	125	62
ACTCTTCAATTTATTG	alt_5177_missing	29	68	38	23	76	33	66	20	70	22
TGTGGTTCTGGGCCCC	ref_5177_missing	78	127	94	74	102	69	130	53	126	56
CTACGTTAAGGAAGCC	alt_5177_missing	40	38	42	23	38	37	43	34	48	28
TCCTGAATTCTCCTGA	alt_5177_missing	45	56	38	47	84	34	78	43	84	54
TGGTAATGCAAAAGGC	alt_5177_missing	10	25	16	11	24	11	34	18	20	14
GGCCATCCTCAAGGTC	alt_5177_missing	4	3	5	2	0	4	3	2	2	2
ACCTGTTTCTATTAGT	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
GGATCTCGGACATTCG	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
TACGCCTAGGGCGGAT	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
AACTTGCTAGCTGTAT	alt_5177_missing	29	22	24	10	29	16	39	21	34	17
GGTATACATGTATATC	alt_5177_missing	19	19	19	17	20	12	30	9	17	12
CATACTAGCTAGCAGT	alt_5177_missing	11	39	20	11	31	15	35	20	34	3
GCCCCTCGTTCGTGGA	alt_5177_missing	17	15	33	18	14	19	17	10	24	10
TCCGTTAATTTTGTAG	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
AGGATCGATTGACGCT	alt_5177_missing	14	22	18	17	29	19	23	15	25	13
GGACTCCGTCAGAACG	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
CTTTCATTAATCCGAT	alt_5177_missing	4	2	4	1	11	4	10	4	4	5
CACTCCCTGAGGCTGT	alt_5177_missing	8	24	10	11	21	14	30	17	33	9
GCATATCACCTACGTA	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
GACTCTATAATGTTCG	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
AACATTCAGGACTTTA	alt_5177_missing	17	13	6	6	19	10	20	12	17	12
AATCGCGGGTCAGATA	alt_5177_missing	36	46	30	29	51	31	39	29	51	25
GGGATGAGTTCCGAAC	alt_5177_missing	0	5	1	0	6	2	2	3	2	0
AGTGGCATCCTCATAC	alt_5177_missing	11	8	9	10	14	12	18	6	16	11
ACTGTATTCCATACGC	alt_5177_missing	34	64	36	24	54	34	56	26	48	19
CATAACGTATGTTCCA	alt_5177_missing	55	105	81	45	95	52	102	50	124	62
GGTCCGGTATACACTA	alt_5177_missing	7	17	6	9	31	7	27	4	18	11
TATGCACATTGTACGG	alt_5177_missing	44	52	35	15	46	17	70	26	56	31
TTTGTAGTACGCTGCC	alt_5177_missing	53	107	75	58	119	63	116	62	108	51
GAAGTGCCCGGCCTCC	alt_5177_missing	0	0	0	0	0	0	0	0	0	0
ATGTATCCCCACGTAA	alt_5177_missing	6	11	5	3	12	7	6	6	20	9
GTACCTGCCATCATTT	alt_5177_missing	29	68	35	25	53	21	45	37	65	32
TTCTGCGGCGTTCGGC	ref_4645_RC	18	4	18	16	16	16	8	19	14	6
TTTTCCCAGCTTACTA	ref_4645_RC	21	19	38	24	29	25	19	20	36	22
GGTACTAATATGTCTT	ref_4645_RC	11	12	21	22	19	24	10	14	15	16
CGTTTTACAACTGAGT	ref_4645_RC	194	154	260	176	141	161	124	168	139	152
CTGGCGGTAGGGTTGC	ref_4645_RC	64	44	80	63	48	60	55	66	60	44
TACTCGGTTCGTCACG	ref_4645_RC	24	23	28	35	30	24	27	30	25	37
CGTACTCATGCTGTCG	ref_4645_RC	100	80	107	99	66	85	88	72	73	80
TCATGATTCTATTACG	ref_4645_RC	7	5	6	5	3	5	2	8	0	6
GTTATATCCAGTAAAC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GTGCACTATTCGTCAG	ref_4645_RC	15	7	11	13	8	9	12	11	9	13
CCTTTTTGTCAATGCG	ref_4645_RC	38	39	66	39	30	39	40	25	39	31
CGTCTTTAAGTCGCCG	ref_4645_RC	99	71	126	128	72	108	85	87	80	81
AACGTTGCCAGTACCT	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TCTGTCTGCTTAGGTT	ref_4645_RC	6	1	7	4	2	2	6	7	2	3
TTTGGGTTACGAGTTC	ref_4645_RC	114	101	155	151	90	128	116	93	101	104
CCAGTCTTGAGAGGTA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TTTTGCTAGTTTTTGC	ref_4645_RC	19	18	26	30	10	18	14	13	12	27
GTTTTGTCAGGAGTCG	ref_4645_RC	10	22	17	19	16	8	21	21	20	17
TTCGGCGGGCCTTTAG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GACCGGTATGTTATGT	ref_4645_RC	81	58	88	77	46	73	46	69	45	64
AACACCGCACATCGTT	ref_4645_RC	8	12	20	19	10	17	9	11	7	11
ATGAGTCTACATACTT	ref_4645_RC	61	37	71	64	35	47	51	56	42	41
ATTTCCCGGTGGCGGG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
ACCCCAGAGTTCCTGA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TGTTCACATGCCTAGA	ref_4645_RC	18	18	14	17	9	24	17	18	13	10
TTCTATTTATTAATCG	ref_4645_RC	12	13	19	15	9	13	9	13	10	19
AACCCACGCCTGTAGA	ref_4645_RC	5	4	5	0	3	3	0	4	7	5
CTCTATAATCGTATGC	ref_4645_RC	19	12	14	17	12	14	7	9	8	7
CCGTAAAAGCGTAAGG	ref_4645_RC	4	2	5	9	6	11	4	7	6	5
CATTATTATAACTCGC	ref_4645_RC	58	34	53	53	32	37	35	42	25	55
CTCCCATGGGACCTCA	ref_4645_RC	1	1	1	2	3	0	4	2	4	1
GCGGCCCGGGAAAGCA	ref_4645_RC	25	28	34	24	28	19	14	32	18	27
TAATGGAAATATTATC	ref_4645_RC	34	13	42	41	14	29	32	35	16	32
ATACACAGGTTTAACG	ref_4645_RC	10	5	22	15	12	11	9	6	8	11
ATTCGGTAATGTTCTG	ref_4645_RC	38	31	56	42	18	43	42	41	30	35
TATGGAGCTTATCCGC	ref_4645_RC	4	3	1	3	7	2	2	7	2	1
GATTTATAGGCTTTGG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CGCAATATTGTGCTTC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CTCTTGGTAGCTTCGT	ref_4645_RC	21	14	23	9	18	16	7	17	9	19
ATCACCGATCAGTTCT	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
ACAAATAGGCTTGTGT	ref_4645_RC	17	12	21	23	14	11	7	20	11	17
CCTTCTATGCATTCTG	ref_4645_RC	5	11	3	3	2	7	3	6	4	4
ACAGTTCTTCTCTGCG	ref_4645_RC	48	70	52	40	76	53	69	47	67	51
TCGGTCGCATAGCCGC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CGATTATGCCCCCGCT	ref_4645_RC	158	140	225	173	141	152	142	157	156	174
ACGTATACAAGCTGGC	ref_4645_RC	43	35	63	38	34	50	25	36	33	43
AGAAGTTTCTTTTTCT	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CCTATCGGTGGTATCA	ref_4645_RC	13	8	16	14	4	7	12	9	4	4
GTAAAACCCGGTTGTA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GTGCCGGCCTTCGAGG	ref_4645_RC	10	12	8	12	13	8	10	12	12	12
ACGCCAATTCTAGAAC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CCTAAGGGGGGGTACA	ref_4645_RC	27	12	39	25	23	29	16	19	22	36
TTCGATGTGTCACCTA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CATAACCCTTTAAATA	ref_4645_RC	20	6	20	7	11	13	8	16	9	6
TATACGGCTTGTACGT	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCTGGCGAAAAG	ref_4645_RC	8	4	5	4	7	8	8	4	10	14
TTTCTTCGCGTACGGT	ref_4645_RC	15	18	30	24	17	19	25	17	26	13
GCGTTGTTTCTGACTA	ref_4645_RC	19	15	30	18	19	20	18	8	13	13
GTACCGGACTCCGGAG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TTAGGGTGTTTGTTGT	ref_4645_RC	6	6	9	7	2	14	4	13	5	4
CGTAACGGGGTTAAAT	ref_4645_RC	32	15	26	20	15	23	12	13	20	22
TGGCAGTTTGACTCCC	ref_4645_RC	5	1	5	1	4	2	6	8	4	2
TTCTACTTGTGATTAA	ref_4645_RC	27	31	38	35	28	23	21	29	26	26
TTATATTTTTCTGAAA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TAACTTGTTCGAAACA	ref_4645_RC	69	60	78	61	51	61	48	60	43	62
TTCTGAGTGGCATAGT	ref_4645_RC	25	14	13	21	13	25	14	18	15	16
TCTTCTCGCAAGCTAA	ref_4645_RC	51	37	40	38	35	41	23	39	28	33
CCTATCTTTTTCTCGT	ref_4645_RC	50	21	39	49	24	32	16	43	30	33
TAATATTGGGGGTAGT	ref_4645_RC	50	43	79	60	49	70	52	55	39	58
AGTGCTTTGAACCCAA	ref_4645_RC	25	19	27	30	21	18	30	37	21	21
TGGATGGCTAACAGTC	ref_4645_RC	13	15	9	21	12	18	16	17	10	10
TGCAATTCTAATGTTG	ref_4645_RC	105	92	141	138	88	111	96	112	76	91
GTAATGTTACTAAGCC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GCGATTCATTCGTGCT	ref_4645_RC	31	30	29	32	19	30	14	13	14	20
GAGGCATTAGCTGCGT	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GAGCCCCGTGTGCGGA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TACCCCGTTTTTTTTT	ref_4645_RC	43	46	67	61	41	38	36	42	65	42
TGGTCTCTGAAAATTA	ref_4645_RC	475	304	573	488	329	489	333	492	324	389
GCGACTATAAACCATG	ref_4645_RC	77	66	90	77	82	61	70	75	59	76
GGACACTTTCATCTTC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GTTCTTTTGCGGGCAT	ref_4645_RC	167	116	196	182	130	169	132	154	130	148
GTCAACCAAAATTCAG	ref_4645_RC	53	38	48	59	49	49	45	44	63	34
AATTCCATTGACGCAA	ref_4645_RC	22	14	19	16	13	13	13	16	11	11
AAATATTAGCGTATCG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TGCCCCATCACTGTTC	ref_4645_RC	113	81	103	95	57	90	48	92	63	97
AAGGCCAGCTGGACTC	ref_4645_RC	54	43	47	63	35	46	44	42	34	42
GTATATCCCTTGACGC	ref_4645_RC	10	2	12	2	4	10	3	6	3	5
GATGTTGGCACAGTGG	ref_4645_RC	21	12	17	17	15	19	5	17	15	14
ATTGGTAGCTCTAGGA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GTGGGCTGGGGAATTC	ref_4645_RC	97	75	116	101	59	82	66	68	68	80
TAGCCATGCTGCCAAG	ref_4645_RC	37	40	35	45	47	49	39	40	51	43
GGGGGGTCGCAGGATA	ref_4645_RC	153	99	173	163	113	153	104	160	138	134
CCTTACCCTGATGTTG	ref_4645_RC	6	5	8	8	12	8	4	9	3	2
GGCAGGTTCCCACTGC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTTATTTGACAT	ref_4645_RC	27	11	25	24	22	30	21	24	22	21
CAGGCTATTTGACCCG	ref_4645_RC	13	12	17	13	7	13	9	16	15	13
GATCCCGGCAGTCGTA	ref_4645_RC	36	21	39	42	17	23	16	24	13	27
ACATTTCTATGCGATG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TCGCGTATGGCGTCAT	ref_4645_RC	64	41	67	59	41	58	40	50	46	74
GTCATGTTCAGAACAC	ref_4645_RC	47	33	57	47	29	40	28	52	37	40
GGCTGTCACTCACACA	ref_4645_RC	51	30	60	54	19	39	29	38	21	37
GTTTCGGTTGATGTTG	ref_4645_RC	15	14	13	11	11	11	9	8	23	11
TACGAACCTGAGGGCA	ref_4645_RC	21	21	20	25	9	17	8	13	11	13
CATAAGCAAGAGTTGG	ref_4645_RC	36	26	43	52	25	40	32	39	27	37
CGTTTGTATGCTCTAA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GTTGTGGCGACATGGG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GTTCACCCCATTCAAA	ref_4645_RC	70	48	75	76	40	61	46	51	51	49
AAGTTAAATACTGGGA	ref_4645_RC	29	12	42	22	11	35	16	23	13	16
ATCGGTCCCTTTTTGG	ref_4645_RC	10	10	19	9	15	10	15	4	8	9
AATCTAACATCACGCT	ref_4645_RC	98	73	80	91	54	67	47	80	63	69
GCTACTCCGTTCCATG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTACGCTGGTCC	ref_4645_RC	34	22	42	20	26	24	28	19	18	20
CATCCTCAGGTTCGTC	ref_4645_RC	29	24	25	25	22	27	30	29	22	18
TACATATTTGTTCGGG	ref_4645_RC	31	31	39	39	27	23	24	45	15	29
GTCTAGATGGACAAGT	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CATATGCCCACGCAAC	ref_4645_RC	58	52	65	58	44	63	71	53	45	49
ATAACTGTGTTTTCGC	ref_4645_RC	86	40	98	80	46	78	59	82	67	79
TTCGCCGATTCTCACT	ref_4645_RC	21	22	34	26	22	23	28	34	14	20
AGTGATGATCTGTTTA	ref_4645_RC	26	14	31	30	13	32	16	22	18	37
CATCCTCTCAAAGGCA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
AACTTAGGAATACAAC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TTTTGTCATCGTCGTA	ref_4645_RC	16	19	35	24	18	31	21	22	18	20
CCGTTTTTAGGTTAGT	ref_4645_RC	133	118	167	164	131	168	142	178	147	142
CATGGTCGTAGTGATC	ref_4645_RC	12	2	20	14	6	14	9	10	10	3
TCGTATCAGCCTCCGA	ref_4645_RC	28	28	36	30	16	40	19	36	19	28
AATGCGAAACTGGAAC	ref_4645_RC	16	16	18	23	17	15	12	14	9	18
CAGGAATCCCGACATT	ref_4645_RC	38	16	45	38	28	33	26	43	28	23
GACTATTCTTGATATG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TTCACCGGATGACCAG	ref_4645_RC	11	17	23	26	30	22	26	20	22	24
CTGTGTGTAATAAATG	ref_4645_RC	79	58	92	77	64	71	74	89	75	82
GGCGCGTTGTGCGACG	ref_4645_RC	52	28	66	53	46	53	43	46	44	35
GTGGTTCCTCACCTCA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GTACTCTGCAATTTTT	ref_4645_RC	14	14	13	12	14	16	11	20	15	20
CTCTAAAATAATCGAT	ref_4645_RC	12	17	12	11	23	7	29	12	19	4
CATACTTGTTTATGGC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
ACTCGACCATGTTTCT	ref_4645_RC	5	13	11	8	15	10	9	6	13	2
TTCATTACATGAGTCT	ref_4645_RC	22	18	36	26	17	17	21	27	27	33
GTCATGTTAATTACGC	ref_4645_RC	14	13	12	17	9	14	14	9	21	8
ACCTAATCATCGATTT	ref_4645_RC	54	44	68	56	32	48	52	55	40	65
TGGTTATTAAGTGCGA	ref_4645_RC	44	36	64	34	24	35	32	41	31	33
AGCGCCGTCCTATTTC	ref_4645_RC	2	2	9	9	6	4	1	5	4	6
GTCTACAGACATCGCC	ref_4645_RC	45	30	42	50	40	46	34	47	27	49
GATTTCACACTTCTTG	ref_4645_RC	15	5	22	16	19	16	3	13	8	11
TTGTCCCCCACGCTCG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TGCTTAAATATTCGTC	ref_4645_RC	1	3	2	7	3	2	4	1	2	2
CGCGCTTCTAGGCCAG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CAGGGACATTCTCAAA	ref_4645_RC	44	34	48	41	35	33	25	34	31	31
TACCCCGTTTTTTTTC	ref_4645_RC	0	0	0	0	0	0	0	0	0	1
CATATGCGTAGCCTGG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TACGCTTGTCACATCG	ref_4645_RC	65	45	76	75	51	75	46	45	45	43
GGACTGCTCGGGTTTG	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
CAGCTGGGCCACATTT	ref_4645_RC	101	79	116	103	106	87	97	106	105	82
TCCACTGTGATTTTTC	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
GAAGCAATTTCAAGCT	ref_4645_RC	99	87	143	102	68	89	83	86	79	77
CGCACGATTAACATTC	ref_4645_RC	18	15	24	19	13	14	14	13	17	12
TGTCGCTAGAGTCGGG	ref_4645_RC	2	0	1	1	0	1	0	1	0	0
GACTTCTTTCGTGGCA	ref_4645_RC	0	0	0	0	0	0	0	0	0	0
TTTTGACACTAAGACT	ref_4645_RC	75	63	87	72	53	97	71	68	54	69
TGGCATCCCCTGCTTC	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GCCCAAACTACTCCCA	alt_3665_fdr	11	10	9	16	10	6	17	8	8	6
ACTTTCCACAACCTGC	alt_3665_fdr	1	6	2	4	3	0	7	2	2	1
CTTTGGTTCTCTGTTC	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GTACATTTTAGAGGTA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGCGCGCACAGGT	alt_3665_fdr	0	2	2	0	0	3	1	0	2	3
CATGTAAGGCGCCCAC	alt_3665_fdr	7	21	5	5	13	6	14	8	15	6
GCTGTTGTTCTGCGCT	alt_3665_fdr	3	6	7	4	6	7	12	0	7	8
TTGGAGAACTACCATA	alt_3665_fdr	20	59	30	20	79	29	67	46	64	33
TTGTTAATGCGTATCA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GATTCTAGGAGATTTA	alt_3665_fdr	13	39	19	16	37	17	41	18	33	14
TAGTACTCTCGTACAT	alt_3665_fdr	14	35	13	13	20	12	22	9	25	4
GTTGGATCTTCAGTTG	alt_3665_fdr	20	33	26	14	41	19	42	16	41	25
TTCTCGTAGCAGTCTT	ref_3665_fdr	3	10	4	7	10	3	11	7	5	6
CAAGAAATTTTAGTTC	alt_3665_fdr	0	7	2	5	7	5	7	0	2	0
CAATAATCCAGCCGTC	alt_3665_fdr	1	12	4	3	14	4	6	2	8	2
CAAATACATAACATTA	alt_3665_fdr	35	45	34	30	70	25	66	27	54	26
GCGAATCGACCTTGTG	ref_3665_fdr	18	62	19	15	49	13	43	16	67	16
CTGATTTACCATATAC	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGAGGATGCCTTT	alt_3665_fdr	8	21	15	19	35	13	29	21	22	7
TCCCTAATTGTAAGCA	alt_3665_fdr	54	137	59	58	133	63	119	65	116	37
TCACCAATAGTGTTGC	alt_3665_fdr	17	117	27	29	107	27	131	25	127	19
AAGATCTAGAACAGTT	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCGCAATAGATGG	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GGCGATGCAACAGCTA	alt_3665_fdr	6	11	3	3	14	3	11	10	12	2
ACTCCTTCGGTTGCAA	alt_3665_fdr	2	14	3	5	15	2	16	4	15	2
CGTTATTGTCGGTTTG	alt_3665_fdr	17	61	24	29	79	23	65	15	57	31
CTTAACCTGACAATTT	alt_3665_fdr	5	13	12	15	31	10	11	16	20	6
ATATTAAGCCTTTGTT	alt_3665_fdr	39	58	44	27	59	24	91	30	57	32
TTTACGATATTGAGAG	alt_3665_fdr	25	58	29	25	49	18	58	14	54	15
GGGGAGTTCGTCTAAA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TGGCATTATCGAAATC	alt_3665_fdr	4	8	4	3	6	1	6	3	9	1
GTGCGTCGCCCGTCTC	alt_3665_fdr	35	69	42	40	92	26	84	33	79	32
CTTAATCATCATCGCT	alt_3665_fdr	23	44	20	22	42	17	39	20	38	22
TGTAGCCTACATAACA	alt_3665_fdr	6	14	1	3	10	1	7	2	12	3
ATCCGAGTTCACATCA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCTATACCACAAA	alt_3665_fdr	4	6	6	13	9	3	14	7	9	2
TCAGCGCACGTTCTGT	alt_3665_fdr	4	4	1	3	10	4	10	3	10	2
GTTCTCGATTTCAGGA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GTCTATTCTCTTTGAC	alt_3665_fdr	7	25	14	7	36	12	16	8	24	12
TATCTACTCCTGCCAG	alt_3665_fdr	0	1	0	0	1	3	3	1	2	1
CGAATTCTTCCATTGT	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTATCCACATCGA	alt_3665_fdr	10	16	6	12	16	5	9	8	22	7
CCATTTCCGATTGAAT	alt_3665_fdr	11	17	3	3	17	12	15	6	20	6
GTGTCGGCTTCATCAG	ref_3665_fdr	140	291	151	146	279	160	295	160	302	146
AGGCTTCCACGCAGGG	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
CGATCTGCGACATATG	alt_3665_fdr	5	11	10	8	20	7	24	8	11	9
TGACCATGTGCACCCG	alt_3665_fdr	29	43	36	30	62	22	56	30	60	23
CCTCAACAATCACTTT	alt_3665_fdr	6	25	3	4	21	8	27	10	25	3
CTCGCCGGAGGGATAT	alt_3665_fdr	8	30	7	14	28	8	33	9	26	12
ATGTACTCAGGCCGGG	alt_3665_fdr	1	0	0	0	1	0	3	0	0	1
TCTCGGTAGAATAGCA	alt_3665_fdr	1	12	11	7	7	6	13	4	5	6
ATTATCAAGAGTGCGG	alt_3665_fdr	24	64	27	34	67	28	49	37	67	26
ATTCGCATATGCCAGA	alt_3665_fdr	41	113	75	38	102	63	102	43	105	45
GATGGTTTGACTGTGG	alt_3665_fdr	5	12	7	7	16	7	13	9	21	3
AGCTGCTTCGGCTTGC	alt_3665_fdr	6	15	14	6	22	17	21	4	17	6
CACCTTGGCTATTTGC	alt_3665_fdr	2	4	4	1	4	0	3	4	1	2
TACCTACAAAGGCGAG	alt_3665_fdr	4	11	4	6	8	7	8	9	13	8
ATTAGACCGGTTCGAC	alt_3665_fdr	8	34	22	13	47	12	35	16	31	13
AGGGAACGCCGACATA	alt_3665_fdr	31	51	25	17	55	29	62	30	58	15
CAATTAGGCCGCTGAT	alt_3665_fdr	4	7	8	6	10	5	6	4	6	5
CGGGCATTATGGGTTA	alt_3665_fdr	19	35	22	20	37	14	41	25	35	28
GCACGTTGATTGATGT	alt_3665_fdr	14	40	14	11	48	20	36	7	24	20
TGCTGGTCCACTGGAA	alt_3665_fdr	19	32	17	25	42	26	50	16	46	14
CGGTGTCGTATACGAT	alt_3665_fdr	1	0	2	0	0	1	0	0	4	0
GTGTCGGCGTCATCAG	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTCTGCCACGCC	alt_3665_fdr	7	30	21	12	28	13	47	7	36	19
CTTTCGCATTGGGCTT	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAAATTCAGCGAG	alt_3665_fdr	10	25	27	18	24	8	52	14	28	8
GACCAGTCTACTCCTC	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGATTGACCATG	alt_3665_fdr	46	131	56	61	134	58	118	53	128	48
TTGCTGTGGGTTGAAA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGAGTTCACATCA	alt_3665_fdr	98	151	115	69	192	78	173	79	185	87
ACATCGGCCATTTAAT	alt_3665_fdr	43	69	54	25	72	24	86	27	73	18
AAGGCTTTGCTCCATC	alt_3665_fdr	39	59	33	30	50	21	63	24	70	24
AACCTCTATGGTCGGT	alt_3665_fdr	10	10	2	3	11	5	11	9	7	3
CCAAGTCCTGGGGTGC	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTGTCTACCGCCT	alt_3665_fdr	4	7	7	10	6	5	8	4	14	4
CAAGATATAAAGCCTG	alt_3665_fdr	20	66	43	29	65	24	74	27	65	17
CCAGGCGAAAGCATTG	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCTTGAGCGGAAT	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTTTCAGACCTGC	alt_3665_fdr	25	67	40	46	69	32	68	28	72	40
TGTCGTTCCGTCTCAG	alt_3665_fdr	1	2	2	1	3	0	7	1	5	1
GCATACTCCTGCAATA	alt_3665_fdr	17	32	6	7	47	14	34	7	36	9
TGTCAAATATTGCTTC	alt_3665_fdr	25	41	34	27	38	35	52	20	46	20
GTTTCGCTAGTACTAA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TCTTAACGTATTTCTT	alt_3665_fdr	14	21	10	11	25	13	25	8	26	9
TGGCAATATGGTCTAT	alt_3665_fdr	14	31	7	9	27	12	30	9	23	7
AGACGCGAATTTGAAG	alt_3665_fdr	30	40	34	22	58	25	63	29	38	26
GGAGAGTCGTCTTCTA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTACAAGCGATCC	alt_3665_fdr	4	4	7	3	16	3	10	2	12	4
TTCCTCAGACCTCATC	alt_3665_fdr	13	31	7	8	26	8	22	10	23	4
GTATTCGCGTGTGCTT	alt_3665_fdr	63	139	74	71	171	51	164	68	158	58
TTGCTCATGCGCTGTG	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
CAAACTTAGGTTTCAT	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGTTCTACAGGTG	alt_3665_fdr	16	48	17	25	44	30	47	20	42	31
GGGATCTCGTGACCAG	alt_3665_fdr	2	7	1	2	2	3	2	1	7	0
CACCCAAATCTAATCA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGATCAGTTGTGT	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
AGACAGCACTCCTAGA	alt_3665_fdr	29	50	26	19	57	25	51	18	32	21
GTTAGAGTTGACGCAG	alt_3665_fdr	5	27	13	4	24	9	20	9	28	4
GCATATTTCTTTGTTA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGGACCTAATGAT	alt_3665_fdr	7	16	8	3	16	10	17	9	19	6
TGTTTAATAACCTTTC	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGCCTGGGGATTG	alt_3665_fdr	9	11	6	7	13	8	22	10	22	5
GTTGGCAGGTTAACAA	ref_3665_fdr	11	13	17	14	16	11	21	11	18	16
GGTTTCGAGTCATTAA	alt_3665_fdr	19	35	16	10	35	10	29	13	39	15
CTGACTCTTCGTGCTC	alt_3665_fdr	10	33	5	6	21	13	23	10	30	15
TGTCTACGCGACTTCT	alt_3665_fdr	20	49	27	20	27	23	59	12	37	19
CGGATCCACATTGTGT	alt_3665_fdr	42	67	50	30	58	37	76	28	68	29
ATTGTTGTGTCTTGGG	alt_3665_fdr	11	39	28	14	34	18	43	13	43	9
AGTGAACGCGTCTGAT	alt_3665_fdr	16	24	8	3	23	8	25	8	17	10
CGCTTGTTCTAGAACA	alt_3665_fdr	0	0	0	0	0	0	0	0	0	0
CACTAAAACATGCCAC	alt_3665_fdr	5	5	4	6	7	2	10	6	12	3
CTGGCCGTAACCCTTC	alt_3665_fdr	7	26	16	6	27	16	18	7	22	10
TCTTTGCGTAACTTAG	alt_3665_fdr	37	82	58	47	83	38	100	29	113	35
CGTGTTGGGTTTCTAC	alt_618_reverse	44	74	50	52	80	53	64	46	102	39
CATTTTTTGCGCCCTA	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
CCATAGTAAGCTTTCA	alt_618_reverse	25	67	27	30	46	20	88	25	62	14
GACTTGTGTACTCCTT	alt_618_reverse	36	73	51	47	72	52	68	51	62	54
CGCTCTCGGCAAATTT	alt_618_reverse	22	38	18	39	41	22	34	24	28	30
GCTGGATGGTTACGCC	alt_618_reverse	2	7	9	9	14	10	12	9	8	6
AATGGTCCAATGCAGT	alt_618_reverse	56	87	83	66	79	65	100	49	80	69
CGGCACCAACACTTTC	alt_618_reverse	14	9	12	3	13	6	3	8	20	5
ATAGCGAAACGGCTCT	alt_618_reverse	4	7	6	6	4	1	3	1	5	2
TGGGTCATGGAGTCCA	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
TTATGCGTTCCACTGA	alt_618_reverse	126	195	153	122	194	123	206	97	210	102
TCGCCTGGGGCAAGGC	alt_618_reverse	38	51	41	32	42	28	39	33	46	27
ACCTATTTTCGGTGGC	alt_618_reverse	5	10	13	9	13	10	10	4	17	9
CCGCATGTTAAGGAAT	alt_618_reverse	142	320	249	185	275	165	337	167	369	165
TTTTTACCCTACAGTG	alt_618_reverse	32	47	35	41	43	26	50	25	50	19
CCATTCGACACCTTAT	alt_618_reverse	16	23	13	16	23	17	21	13	36	17
ATCTTTGCTTAAGTAC	alt_618_reverse	5	5	2	0	6	4	10	2	6	3
GGTGATAGTATGCCGT	alt_618_reverse	2	2	8	0	9	4	8	1	10	5
AAGGTTGCGGCAAAAC	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGATATTGTGCGG	alt_618_reverse	19	43	20	19	37	28	39	11	49	24
CTTCGGTGTCCTGCGT	alt_618_reverse	10	4	14	6	15	5	4	12	7	9
TGCAGAAACGCCCGCT	alt_618_reverse	44	48	36	42	47	34	37	37	48	40
ATGGTGGTCTCGCAAT	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
CCGGGAACGGCGGAGC	alt_618_reverse	190	228	263	220	221	210	216	197	223	193
AGGCGGGATCTACTGG	alt_618_reverse	56	59	69	65	74	56	72	59	74	51
CGGCTCTAAAGTCCTC	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
TACACCCCTGACCAGT	alt_618_reverse	4	9	3	2	3	4	8	7	10	2
TAATACGGGACTCAGT	alt_618_reverse	0	0	2	2	3	0	0	1	1	1
TTTGCCTGCTTAGTGG	alt_618_reverse	6	9	1	7	10	4	8	3	12	3
GCGTGTGATCCCCTAC	alt_618_reverse	45	65	45	47	50	47	59	39	64	59
TTTTGCTCCGGATTCA	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
GTGCAGTCGTAGGTGA	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCTGCATGTTGCA	alt_618_reverse	11	25	21	13	17	15	26	21	18	8
AATAGGTACTATATTG	alt_618_reverse	96	116	108	97	135	100	143	106	144	108
ACTCATTCAGAGCTTT	alt_618_reverse	0	0	0	0	0	0	0	1	0	0
CTATGGGGTCCGTGAT	alt_618_reverse	7	9	6	6	7	8	11	10	11	5
TTCAAGGAAAATTTAA	alt_618_reverse	96	104	144	100	113	95	140	106	109	71
GAGTGGGCTCATGAAA	alt_618_reverse	10	19	9	14	17	10	13	9	18	12
TTCACTGTCTTATTTC	alt_618_reverse	19	9	20	23	15	12	14	16	12	23
TAAATCTGCCTTTAGT	alt_618_reverse	10	16	26	7	21	9	14	15	18	4
ACGTAACAGTGTTTGA	alt_618_reverse	10	11	9	13	17	9	15	6	30	9
GAAACACGAATCCGGA	alt_618_reverse	13	9	16	12	15	8	11	10	12	8
TCCGGCCAGGCCCGTT	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
CTAGGGTTAATCAGTA	alt_618_reverse	5	5	2	2	8	8	7	4	17	5
TAAGTACACTCAGTAC	alt_618_reverse	29	69	49	41	64	38	75	33	85	35
CAAACTCTTCTTTATC	alt_618_reverse	18	26	36	21	19	16	25	10	21	23
TGCCTACCCCCTACCC	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGCGTGCGAGTTA	alt_618_reverse	9	16	18	9	13	15	9	8	6	7
GGCATTTTCTTGGCTG	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
CACTAATAATCCATGA	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCGTCCGTAAAT	alt_618_reverse	36	37	29	43	43	27	47	44	59	34
TTTATCCGCGATGGTA	alt_618_reverse	5	6	8	4	4	0	12	9	3	10
GGCCGCCCGCGCAGTG	alt_618_reverse	0	0	0	0	0	0	0	0	0	0
AATTTGTCGAAATCTG	alt_618_reverse	48	36	45	41	31	37	40	22	49	30
ACTAAAATTCTGCTGG	alt_618_reverse	7	16	10	5	10	8	24	12	8	6
TAGCAGCGTCAATTTC	alt_5828_new	0	5	4	1	2	0	0	0	1	0
TTAAATAGCCCGATCC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CCGCTCACTTATTCAT	alt_5828_new	61	38	77	49	56	56	44	59	30	46
ATCATATCTGTCTTAG	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GATTGCCCAAATTGGA	alt_5828_new	312	308	398	346	302	306	327	318	375	295
GTAGATTGCTAACACT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GTTTCTTGGAGTTCTA	alt_5828_new	6	9	7	5	12	5	7	10	8	9
TTCTTACTTTGCCCGG	alt_5828_new	35	49	64	36	57	39	40	29	58	21
GTGTTCATCCCCCATG	alt_5828_new	65	62	94	90	56	83	78	69	51	74
GGCCACTGTATGCTTG	alt_5828_new	3	5	4	2	3	1	2	3	11	5
GGATCCTCATGTTTTT	alt_5828_new	89	62	114	95	78	72	67	73	83	69
TATCCCTGTTAGAAGG	alt_5828_new	29	30	37	30	29	43	38	24	31	21
TTACGCTACGCCTCAG	alt_5828_new	4	3	4	5	3	1	5	7	7	2
AAATCCTACTACTCTA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TTTTCTGTGCTCCTCC	alt_5828_new	83	63	91	73	47	72	58	74	50	82
GTCGTGAGGTTGAGAG	alt_5828_new	29	35	38	35	53	35	46	41	38	38
ATTCCCCAGGTTAGTA	alt_5828_new	14	14	7	10	8	7	4	10	12	7
ATCTCATTAGGGATAC	alt_5828_new	43	45	76	60	43	47	51	50	59	56
GCCACGTTGTGAATGT	alt_5828_new	6	5	7	6	12	8	8	11	17	10
TCTTTTATCCGATGGG	alt_5828_new	4	3	2	5	1	5	2	5	1	11
CGGTGTCTCATCGAGA	alt_5828_new	93	93	83	103	78	82	84	80	77	51
GTGGTTCAGTCTTATA	alt_5828_new	39	32	56	43	49	32	51	39	41	42
AGTCCGCACAATTTAG	alt_5828_new	46	31	54	50	37	38	47	36	47	38
TTCAATTAACACGCCA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GGTTACAATACCATTT	alt_5828_new	36	27	55	48	29	35	45	39	54	41
TCTCTTTGTCCTCCGT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CGAAACTACACGGATC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CACCTCGACAACATTG	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CGAAGAGTGATTCGCT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GCATTTATCCTCTTCT	alt_5828_new	54	58	63	55	51	44	45	54	45	35
CCATGAAGTGTTGTGT	alt_5828_new	37	43	52	43	48	51	42	44	58	42
CTGGTGATTGATCTCC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TTTTTTTACCTCTGTG	alt_5828_new	18	16	25	16	29	23	23	18	26	39
AGTTTTGGCAGTGTAC	alt_5828_new	84	107	102	89	88	66	92	78	103	75
ACAGATGTGGGAGTCG	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TCTGCATATCGGAACT	alt_5828_new	104	90	143	109	85	80	109	89	101	89
AACACGCCGGAGGCAC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TATTATGCTTCTTGAT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GCTGGGTGCGTTGGTT	alt_5828_new	38	48	59	40	32	34	33	33	50	30
TGCCAGACTTGAATAG	alt_5828_new	28	34	32	37	38	31	39	38	41	27
GGACTAAAATCGGTGT	alt_5828_new	42	25	38	44	38	28	44	35	28	37
GCATGCAGGTATTAGC	alt_5828_new	124	115	129	114	89	115	111	108	110	110
GCATTGACCTAAGTCA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
ATCCGTGGATTCTTGT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
AAGGTTCTTAACACGC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GTGTGCTGCTGATTGA	alt_5828_new	41	41	52	44	45	33	46	27	46	31
ATGTTATGAAGACCGT	alt_5828_new	13	16	24	18	11	16	15	14	14	20
GTGTTATCCATTATAA	alt_5828_new	46	50	51	39	35	43	49	44	40	40
TCAAACCACGGGGGCT	alt_5828_new	69	60	83	78	56	55	53	64	60	65
GGCACGGCATATCGTC	alt_5828_new	17	20	31	16	22	18	15	26	20	11
ACTTGTCATTACACAA	alt_5828_new	15	23	25	24	28	24	18	25	25	22
ACTGTATCCCGCGATC	alt_5828_new	50	47	49	42	46	30	49	42	35	36
CTATTATACAACTTGT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TGCGTTGCGTTGTTGC	alt_5828_new	54	69	96	89	75	74	77	52	83	53
GCTCAGCGTGCGCCCC	alt_5828_new	7	26	9	11	17	12	21	9	19	12
AATCCCCAGGTTAGTA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TGTTCAGTCTACGCCA	alt_5828_new	56	73	88	89	55	66	78	74	71	70
TCTTCGCTTCTTCACG	alt_5828_new	22	28	20	31	24	27	23	23	24	26
CCTCGCACTGGGGTAT	alt_5828_new	21	12	17	17	13	10	11	13	16	11
GCGCAATGCGCATTGA	alt_5828_new	40	27	38	33	33	43	27	27	39	29
TACGATCCGTCTAAAC	alt_5828_new	1	5	8	8	6	1	3	1	2	9
TTCATGTGAGAGGTGG	alt_5828_new	21	19	19	16	23	8	14	25	23	17
GTTAGGTTCTAGGAGC	alt_5828_new	39	36	39	25	33	23	39	32	31	34
CCCGTTTTCCCTGACT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GCGGGGGGCCGTAATA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GGTAAGCGTACTATCG	alt_5828_new	155	108	159	140	125	107	111	139	122	131
GTTAGCCCCATCTTTA	alt_5828_new	12	14	19	15	16	19	18	19	30	15
CTTGAAGAGCGACCAA	alt_5828_new	143	162	159	144	156	154	139	140	144	107
CCCTTACTTTTGGATT	alt_5828_new	35	23	36	27	40	25	37	37	31	26
GCTGTTCTGACAATTT	alt_5828_new	3	9	7	10	15	5	6	6	8	11
CTACCTCATTGAATCT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TTTTACTCTCGGCCGA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CTGCTGCCCGATTGGC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CCCCAACACCCATATC	alt_5828_new	48	42	44	39	47	47	31	43	50	35
GCCCCATAGGCGGCGA	alt_5828_new	1	4	0	1	1	0	2	0	5	1
AATTTCACGGCTTAGG	alt_5828_new	57	45	61	54	43	37	49	50	47	48
CAGTGCCCGGCAAAAC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
ACGCTCTACGGTGTAA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CAAGACCTCCGGGATG	alt_5828_new	45	54	60	39	53	51	63	59	80	46
AATATTACGTATTGAG	alt_5828_new	53	53	76	65	43	73	46	48	79	79
TCGGACGGGTTATGGA	alt_5828_new	64	53	87	81	68	47	59	70	72	70
ACAAATTGGCTCTCGG	alt_5828_new	28	44	50	34	42	32	27	43	30	32
GTTGTTATAACGACAT	alt_5828_new	38	27	26	41	19	21	23	34	36	28
TTTGCGGCTATTTCTA	alt_5828_new	117	124	169	123	103	94	123	137	133	103
AGATGCATGGACGATA	alt_5828_new	115	107	126	157	105	126	108	115	113	105
CTTATTTGTGCGAATA	alt_5828_new	39	50	52	31	40	36	49	37	50	34
ATCACCCTCTTCGGAA	alt_5828_new	54	50	82	81	54	70	60	62	58	63
TGGTTTTACTCGAGGC	alt_5828_new	57	46	88	59	60	55	62	54	60	43
GTTGATTAATCGGCTG	alt_5828_new	1	0	2	3	2	4	4	3	2	2
CCGCTCTGCTTTTGGG	alt_5828_new	13	20	8	7	14	8	22	2	25	5
ATTCAATTAGTTGGCC	alt_5828_new	72	56	57	59	73	62	77	54	50	58
ACATTTGTAATTCTCG	alt_5828_new	38	35	33	39	29	30	30	32	28	35
GTGCGCATGCTTGACT	alt_5828_new	4	4	12	4	9	4	5	2	8	3
CATAAATAGTTTGAAT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GTGGAACCACCTGTTT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
ACTGACATCGATATTT	alt_5828_new	68	55	68	62	69	57	47	40	50	32
TTTAACGGTTGTTTGA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TGACATCAGTGCCGTA	alt_5828_new	181	191	236	189	160	167	197	128	176	152
TAAATGATATAGGGTG	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CTTGTCAGCGCTCGTG	alt_5828_new	32	43	52	50	56	36	50	34	69	36
CCGCAAATTTCGGCCA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CACCCGACCAGGCAAA	alt_5828_new	9	14	21	15	19	15	21	16	30	14
GTTACCACGCGAATTT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
ATGTTCCCAGTGTCGC	alt_5828_new	36	33	47	24	27	27	29	24	35	27
GCTATAAGTAGATATG	alt_5828_new	127	125	137	149	111	98	149	109	130	122
ACCTGGTGAGTCCCCT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CGTAAACCTCATGGAA	alt_5828_new	50	38	53	43	45	39	50	47	43	43
TATCACCGGGCTAACA	alt_5828_new	43	43	63	52	55	40	57	42	36	37
TATGTGGCGTGCGCAG	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GGCCAATGGCACGACC	alt_5828_new	8	6	12	10	17	8	2	14	7	8
CATAAAAGATCTTTAA	alt_5828_new	72	73	74	87	67	84	70	86	68	59
TTATACTATACTTGCG	alt_5828_new	147	138	148	131	143	139	174	144	183	124
TAGCCTACATCCGTGG	alt_5828_new	17	12	12	20	15	24	16	18	16	15
AGTTTTCGCCACCCTA	alt_5828_new	25	19	13	24	17	31	20	21	25	28
ATTACAACTTATCACA	alt_5828_new	89	87	124	87	78	85	83	88	94	77
CCTGCTCTCGGCTACT	alt_5828_new	89	92	88	100	104	92	106	89	102	79
TATTGGCTTTAAATTT	alt_5828_new	25	34	31	37	29	33	34	37	34	20
GGACTAAACGTTGTTC	alt_5828_new	52	59	91	44	53	60	77	50	62	43
TCATATAGAGATCTTA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
CTGCAAGAGCTTAAGG	alt_5828_new	56	49	60	53	56	42	65	44	56	57
ATGTTGTCTCTCCCGG	alt_5828_new	37	41	43	38	28	24	37	31	33	28
GCCCACATTGATTTTG	alt_5828_new	42	38	73	94	67	45	59	67	62	42
ATTTGTGGTACTAGGG	alt_5828_new	0	0	0	0	0	0	0	0	0	0
TTGGTGTGGCTTCGTT	alt_5828_new	0	0	0	0	0	0	0	0	0	0
GGCTACCTGTCTTCTC	alt_5828_new	73	52	79	73	37	60	57	50	62	55
CCGATACGCAACTACC	alt_5828_new	20	18	7	7	21	7	30	13	13	7
GCCTACTCATGGCCTC	alt_5828_new	43	36	57	45	37	39	30	33	42	30
GCAGAGCCGGCGTCCC	alt_5828_new	0	0	0	0	0	0	0	0	0	0
ACCTTTTTGGGAGTAA	alt_5828_new	23	32	23	21	20	11	24	14	14	19
CTTTAGATTTTCGGCC	alt_5828_new	136	125	186	159	140	151	123	136	113	126
GTATTCCAGATTCATT	alt_5828_new	42	33	54	31	31	35	39	36	45	28
CTCATTTCCCCCGTAA	alt_5828_new	53	82	97	59	78	78	85	73	80	72
TGGTCCGAGCGTTTAA	alt_5828_new	0	0	0	0	0	0	0	0	0	0
ACCACATCTATAATTT	alt_5828_new	10	4	8	15	15	10	15	7	18	8
CTGGCGCTTATGTGCG	alt_5828_new	23	19	44	13	26	27	28	22	33	18
TTGTTTAGTTGTCTCT	alt_5828_new	25	23	33	33	26	29	36	34	26	21
TGCCCAAAATAGCTGG	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TGCTGAAATCGAGGTA	alt_5830_new	16	31	24	10	23	21	17	21	28	12
CGGGACGCCAATTTGT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CAATCAAGCCCAGGTT	alt_5830_new	6	6	6	6	12	4	7	2	14	2
ACACGAACAACAGGCA	alt_5830_new	18	31	31	14	34	19	47	22	37	21
GATCGGGCATAGTGGG	alt_5830_new	0	0	0	0	0	0	0	0	0	0
GACGAGCTGTCAAGTT	alt_5830_new	23	17	34	33	16	18	19	29	21	22
CACCAACGAATCCCGA	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CGCTTCTTCCGGGCAG	alt_5830_new	10	16	13	9	19	8	9	9	15	8
CCGGCTTTCCTGGCTA	alt_5830_new	2	36	9	4	41	4	37	11	46	3
TGTCTCCTTCCGCTTG	alt_5830_new	20	28	23	12	23	15	31	16	31	17
AACCCCTATCGGAGTT	alt_5830_new	41	57	34	28	48	26	42	31	80	19
GCCTGGGAAGTTCCAT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TTGTGACTAATTACGC	alt_5830_new	1	13	16	8	19	5	18	15	15	9
CTTGTTTTGACATATT	alt_5830_new	23	40	35	31	43	24	57	33	35	18
TGAAAGATCGGGCGTG	alt_5830_new	4	14	11	10	25	9	30	11	8	17
GTGACCTCGGTCTGGC	alt_5830_new	67	149	77	59	149	58	158	46	175	63
GAGCTCATGGCGTAGG	alt_5830_new	7	11	6	11	16	6	13	9	16	8
GCATGACCGCTAATGG	alt_5830_new	37	34	44	36	45	46	59	32	46	31
TACTGAGCTAGAAGGT	alt_5830_new	4	7	4	7	11	2	9	2	5	7
CTGGTACGTATATCTT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TCCATCGAGTTGAACA	alt_5830_new	35	80	44	41	68	65	72	49	76	44
CCTCCAAACATTTCGC	alt_5830_new	8	17	16	11	33	10	43	7	40	2
TACTGTTCAGGCCGAC	alt_5830_new	20	63	22	37	47	33	52	30	45	25
GTAGAGCGCTCATACT	alt_5830_new	17	26	24	17	28	12	24	16	27	7
CTCGGGATTTTTGCCG	alt_5830_new	2	7	3	6	4	3	10	8	7	7
TTACTGTAACTCACTT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
GAACACCGGTTCGCCG	alt_5830_new	6	8	6	6	7	3	12	6	10	3
ACTGTCTCTAAGTTAG	alt_5830_new	9	29	18	18	35	22	24	9	31	10
CACATACGGACTCCGG	alt_5830_new	27	56	53	43	69	47	44	32	47	35
ATGCAATGTAGCATGG	alt_5830_new	44	43	39	30	51	41	39	21	46	29
ACTTTACTAATTTGAC	alt_5830_new	6	5	13	3	8	7	10	4	5	7
GTATCTGCCATGATTG	alt_5830_new	0	0	0	0	0	0	0	0	0	0
ATTGCTATTTAGTCCC	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TAACCGGAAGGTCCTA	alt_5830_new	16	9	12	8	14	10	8	14	11	6
GATTTTTTGTATAAAA	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TCGTGCTTATAGGATC	alt_5830_new	6	7	19	3	11	2	8	5	8	4
CAGACAATTTAGCATC	alt_5830_new	7	17	11	10	21	9	20	4	15	8
GTCCTTGTGTAAAAGA	alt_5830_new	5	15	5	2	11	5	14	4	9	2
TTTGAACTTCATGAGG	alt_5830_new	67	110	80	64	94	52	114	60	98	68
GTATGCAGTTGGCTTG	alt_5830_new	6	3	8	2	7	1	11	6	10	4
GGCTCTCTCTCGGGGA	alt_5830_new	122	163	133	115	146	107	169	105	149	107
GAGTGCGTCGCTGCTT	alt_5830_new	20	34	27	20	57	24	49	30	33	18
GTTACATCAGGCCCGA	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TTGTAAGCCTGTTATC	alt_5830_new	16	38	23	15	32	22	48	18	41	7
TGCTTATGATCGCCTA	alt_5830_new	8	11	2	3	5	2	13	8	13	3
TGTTTCCTGACTTGCT	alt_5830_new	1	8	8	5	5	3	5	3	9	3
AGCATCCTTATTCGTG	alt_5830_new	0	1	1	0	3	2	2	1	2	2
GACTAGCACGGTCACT	alt_5830_new	2	12	7	12	13	7	13	10	15	4
TCTACTTAGCACAAGG	alt_5830_new	45	75	54	39	67	31	78	39	70	36
GGGTTGGTCGGCTCTA	alt_5830_new	19	29	29	20	11	21	16	14	33	17
TGGAGGGCAAACACCG	alt_5830_new	0	0	0	0	0	0	0	0	0	0
GGAGGAACGAGCGACG	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TGTAGATGTGTCTTAC	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CCCGTGGTAGCAATCG	alt_5830_new	64	120	70	76	120	44	112	51	142	48
AGCGCATTTGTGATAT	alt_5830_new	53	80	57	48	73	53	82	40	70	47
CCCTTAGGTTATATAT	alt_5830_new	1	3	3	1	3	2	2	0	2	4
CAGTCTACTAAGGTAT	alt_5830_new	5	11	6	3	19	3	11	2	9	2
GGGGCCGTTACCCATC	alt_5830_new	20	35	27	15	41	17	40	17	48	16
CTTCTTCTCGTCCCTT	alt_5830_new	9	21	8	6	12	5	19	7	31	6
CGCTCCGCCGACACCT	alt_5830_new	4	23	12	11	27	4	15	4	24	7
ACCCCCGGTATGACTC	alt_5830_new	8	5	1	6	5	5	17	3	3	7
GTTCGTTTGATGTGTC	alt_5830_new	36	57	53	51	50	43	74	34	60	23
AATCAACTCAATTGGA	alt_5830_new	15	36	28	14	50	12	35	25	53	13
CTTCAACGCCTGTCCT	alt_5830_new	16	48	24	15	41	13	45	13	43	13
GTCTGTCGTTGGTTTG	alt_5830_new	7	26	14	11	9	9	19	8	34	13
ATACTAAAGTTTTTGT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
GCATTGGGCGTTGATG	alt_5830_new	9	20	9	14	17	8	14	8	13	7
TCCTCGCGGACAGTCA	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CATACACACTCTGCTC	alt_5830_new	0	0	0	0	0	0	0	0	0	0
AGGTCTTCTATGCCTA	alt_5830_new	20	55	25	21	46	15	52	44	55	19
CAGACTCACTATGTAG	alt_5830_new	0	0	0	0	0	0	0	0	0	0
ATACTGGAGCGATCGG	alt_5830_new	42	63	46	41	68	33	76	33	60	28
GATAAATGGTTGCTCG	alt_5830_new	2	7	6	4	6	7	4	8	8	5
TTGTTAATCCCCGCCT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
ACTTTTGCGCTGCCGA	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CGAATTGCTTTGATCA	alt_5830_new	36	55	47	46	52	38	56	34	46	23
TGTGCGCGAAGATTAA	alt_5830_new	49	67	52	31	68	44	66	38	74	31
GCTCGATAAAATTTCT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CTTACTTAGGGTACGA	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TCACGCATGTTGGCTA	alt_5830_new	34	51	43	37	35	34	54	27	46	32
CCCTTGAACAAAGCCT	alt_5830_new	31	61	28	41	61	39	44	39	34	34
TCTATAACGATAATGC	alt_5830_new	41	50	28	30	48	32	38	11	61	24
CATGCATATGTGGGCT	alt_5830_new	7	3	2	2	8	3	9	2	8	8
AAGCTTCCAGCTAGTG	alt_5830_new	24	47	29	16	34	20	40	18	44	7
TCAAGCGAAAGGTAGG	alt_5830_new	61	81	83	72	95	61	101	62	95	52
AAGGTTTCGTAATGTT	alt_5830_new	12	29	14	15	18	12	27	13	21	10
CCGTATCGAGGCTTCC	alt_5830_new	17	27	26	18	20	12	17	15	31	21
GTCGACTGTATTCTTA	alt_5830_new	0	0	0	0	0	0	0	0	0	0
AAATCACTGCTATCCA	alt_5830_new	59	93	86	87	120	77	120	59	117	62
ATTGTGATACACCAAT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CTCCGACTCCTGCTCC	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TGCTCCAGTTTGAGAT	alt_5830_new	6	7	6	12	21	5	13	4	9	12
CTTGTCCTCATCGTCC	alt_5830_new	21	40	32	19	48	22	40	29	36	15
CTAGCTACAGTCGTAT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TCACCATCAGTCATGC	alt_5830_new	0	0	0	0	0	0	0	0	0	0
GCTTGACTAGCTTGAT	alt_5830_new	34	37	33	14	36	13	38	30	38	18
CATCGTAATGTAATTT	alt_5830_new	50	89	88	89	119	60	116	73	125	42
TGTGTTTCTGGCACGG	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CTAATGCCTGTCGTGA	alt_5830_new	76	91	82	62	92	79	97	72	114	51
TCCCAAGGCCGTTGTT	alt_5830_new	103	282	133	128	264	108	274	107	281	88
ATAGCGATCTTCTAAG	alt_5830_new	26	40	37	17	28	18	31	30	39	32
TTGTTGACGAGTTGGT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
CGATGCACCTTAGGGT	alt_5830_new	26	47	33	24	60	20	45	26	56	30
TACTCACCTCTGATGC	alt_5830_new	0	8	1	0	8	0	6	0	9	0
GTTCGACACGAGACCA	alt_5830_new	46	112	76	66	125	59	123	72	118	59
AGCGGTATATTAGCAC	alt_5830_new	12	12	9	14	23	12	19	7	7	8
TAGGTTGGGCCCGGTC	alt_5830_new	0	0	0	0	0	0	0	0	0	0
GATGTATCTCTCATTC	alt_5830_new	49	62	48	49	50	44	69	26	53	43
GCACGCTGATGGCGCT	alt_5830_new	0	0	0	0	0	0	0	0	0	0
TGCGATCCACGTTACG	alt_790_fdr	13	20	15	12	14	15	13	8	19	7
TGTGACTTCTCTGTTA	alt_790_fdr	17	22	14	16	30	18	23	23	17	10
TCTCGAGCCTGGTTGC	alt_790_fdr	83	122	122	111	148	86	125	102	134	87
GTATCTTTTTGTCGCC	alt_790_fdr	70	83	90	67	65	53	77	74	71	70
GCATACAAGTTCGAGC	alt_790_fdr	1	1	0	0	1	1	1	0	2	1
TGGTTCATAGTGTTTG	alt_790_fdr	14	34	20	16	36	22	24	24	43	14
CCCGATCCGGGAACAC	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGGTTCGCATGCT	alt_790_fdr	27	46	63	42	64	36	72	33	69	30
GGTTCCGTATGTCTCA	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTTTAAAGGTCGC	alt_790_fdr	18	24	30	19	42	16	33	24	30	24
TTCTTGTGATTTATGT	alt_790_fdr	18	12	14	10	15	19	22	20	26	4
GTACTTCCATCTATTT	alt_790_fdr	82	85	81	67	110	67	77	66	109	68
TGTGTGTGTATTGTTC	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCGCCGGTGGCCA	alt_790_fdr	29	22	27	20	32	23	25	23	30	18
CTTCTCCCATGCGGAT	alt_790_fdr	53	79	38	56	68	35	75	38	88	42
GGTTATAGCTCCTAGA	alt_790_fdr	17	33	25	20	27	14	33	18	41	12
TCGAGCAAAAACCTAT	alt_790_fdr	9	19	14	12	15	12	19	9	25	11
TAGGTGTGGTGCCATA	alt_790_fdr	21	33	19	27	40	18	29	20	30	11
CAATAGGCCCTAATTC	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
AGCTACATACTAGGCA	alt_790_fdr	14	15	17	5	11	9	15	11	14	5
ACCCGTCCTTATGGTC	alt_790_fdr	29	40	39	29	38	30	42	30	55	30
CTCTCCCAGGCTCAAC	alt_790_fdr	54	117	50	50	95	49	114	49	112	37
TTTCGTAGGAGGGCAG	alt_790_fdr	48	69	61	70	68	50	82	57	77	32
GACAATCATACTCGAC	alt_790_fdr	5	12	8	3	15	12	16	8	13	0
TTATTGTACGCGCCCG	alt_790_fdr	9	13	12	7	13	10	9	12	8	7
TTCTTTTTTAGCTCAA	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTGCTCCTGTTTA	alt_790_fdr	4	5	5	1	2	0	3	6	1	0
GATACAGACGCCGGAA	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGCACGGGATGAA	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGTCAACAACCTT	alt_790_fdr	0	2	1	0	2	7	3	2	6	5
TTTGGTACTTAGTCGC	alt_790_fdr	21	37	23	17	38	13	31	20	36	15
CATTCTCTGAGATTTA	alt_790_fdr	16	23	21	10	25	17	24	9	11	13
CCCAATAAAGCAGACG	alt_790_fdr	65	89	94	85	95	55	108	53	129	56
AGGAGAAGCTGTAGAA	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
GAATGTTGCTGCGCTG	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
AACTAATTAAGATGCG	alt_790_fdr	37	43	53	49	57	35	44	35	51	28
CTTGCGAACGTGTACG	alt_790_fdr	63	113	71	80	131	65	113	45	136	72
CATTCCCAATAAGATG	alt_790_fdr	6	3	2	6	10	3	7	2	2	2
GGATCGGAAATGGGAC	alt_790_fdr	18	24	27	22	41	22	45	31	39	17
ACACACTTCTAACTTA	alt_790_fdr	6	18	7	15	20	11	11	4	20	5
ATTGGCCTGGGATCTA	alt_790_fdr	36	46	48	24	52	27	51	31	41	35
TTCTAGCTACATGTTC	alt_790_fdr	20	26	17	18	29	13	30	9	21	16
CTTTACTCCTTTCCTG	alt_790_fdr	11	16	17	19	26	13	22	17	20	15
ATCATACCGCGACGTT	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCGCGTAGGAAGA	alt_790_fdr	9	7	9	16	11	5	5	6	13	1
GCCAGTGACTCTGATG	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
TAGCATCATTATAAGT	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
ACAACTTCGCAACGTT	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTTATAAGGCGAC	alt_790_fdr	5	17	9	10	11	7	13	8	19	3
ATATATGTGCCCTATC	alt_790_fdr	33	59	45	49	53	45	70	47	73	36
TAATGCGCACCCGTCA	alt_790_fdr	90	147	100	101	151	73	160	81	152	75
TTGTAATGCATAAGCT	alt_790_fdr	57	67	66	66	72	53	98	53	61	44
AGCTTTCGAAGGATTA	alt_790_fdr	11	20	12	7	20	7	17	16	27	15
CTTAAACATGGCAACC	alt_790_fdr	159	194	196	160	197	147	230	170	228	154
GTGACCGTGAACCATG	alt_790_fdr	17	28	20	18	20	11	19	14	15	21
GGTTCTATAACTCATA	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTGCACTCCCGTG	alt_790_fdr	4	63	5	12	63	11	72	2	77	3
TAATAAATGGCCATTC	alt_790_fdr	64	73	84	65	92	56	69	44	73	66
TAACCAAGTTGACCGG	alt_790_fdr	7	46	6	5	32	14	40	9	44	7
AGTCTCCAGCGTCACG	alt_790_fdr	8	4	4	4	4	5	6	7	3	1
GGGATCGTCACTTCGG	alt_790_fdr	30	40	31	38	28	23	44	32	32	27
GGCTAAGTAACCATAG	alt_790_fdr	56	81	64	65	78	53	108	43	98	50
GTGCGCTTGATATCCA	alt_790_fdr	99	174	107	106	149	93	153	91	179	112
ATTCGCTTTCATATGC	alt_790_fdr	2	2	3	0	1	2	3	1	3	1
TATGTTAGTGGTCCAC	alt_790_fdr	34	84	56	52	75	46	69	50	71	42
GTCTCTCTTTGAATGA	alt_790_fdr	1	4	2	3	9	5	2	1	9	2
CCCTGAACCCCTTTGC	alt_790_fdr	19	28	16	20	38	21	24	20	33	16
ATGCAACGATTACCGC	alt_790_fdr	2	3	3	2	5	2	5	5	5	1
GTTTTCCGGATGACCA	alt_790_fdr	31	30	36	33	35	30	47	29	50	19
TCTATTTCCGAGTCTC	alt_790_fdr	15	21	19	19	33	12	34	13	36	15
TTTCAACGGTTTTCTA	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
GCACTCCGCTGACCGT	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGTGAAATTACTC	alt_790_fdr	0	0	0	0	0	0	0	0	0	0
TATCTGGTTCGATATT	alt_790_fdr	18	33	24	26	28	20	35	27	35	23
GGCGCGTGCTTAACTT	alt_790_fdr	27	32	22	33	45	23	44	22	53	25
TCCCGCGATACTTCTC	alt_790_fdr	10	16	11	9	16	8	9	7	12	5
TAGGCTCGTTTATTAC	alt_790_fdr	17	25	24	18	33	13	25	14	36	14
TGGCCCCGGCGATAAT	alt_5896_new	0	0	0	0	1	0	0	0	0	0
TGTTATGTCTATGCCG	alt_5896_new	19	42	18	18	23	20	19	16	29	21
ACATAACAAGGTTAGT	alt_5896_new	60	64	46	67	75	56	78	58	78	61
CTTGTATAAGGCGGTT	alt_5896_new	6	6	8	8	14	11	20	11	6	15
GGCGTGACCGATGCGG	alt_5896_new	149	153	150	114	194	136	156	146	177	125
ATTCAAACACGGTCGT	alt_5896_new	13	15	7	8	13	11	12	6	16	5
TACTCCAGTATCAGGT	alt_5896_new	17	41	10	16	34	7	38	13	40	11
ACTCATGCGCTACTTT	alt_5896_new	37	78	39	27	111	22	105	27	105	21
TCAGGCGGGATTATTG	alt_5896_new	150	219	180	148	251	181	259	161	252	159
CCTTTCAACTAAATAT	ref_5896_new	7	4	9	4	8	3	7	2	9	4
CCTAGACTCCGTGTAA	ref_5896_new	39	64	39	33	57	20	66	24	73	31
CAAACTCAGATGGTCG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
ATCCTGTTTCGTTTAT	alt_5896_new	15	16	13	18	23	19	17	16	20	18
GAGTACTTTTCCTAGC	alt_5896_new	95	142	110	90	132	82	146	70	128	82
TCGTAAGGTAGTCCGC	alt_5896_new	42	83	49	55	72	46	71	37	79	45
TTATATCCACACATGA	alt_5896_new	64	89	74	62	91	63	76	60	83	61
TAGGAGCCAGCTTAGC	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CTGAGTGGAAGATTCT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
AATGGCCTTCAAACAC	alt_5896_new	30	32	32	23	21	25	26	24	32	14
GCCCAGGCTGGGGTAA	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CTTCGTACGATTAAAT	alt_5896_new	0	0	1	0	0	0	1	0	0	0
TGCCACTGTACTTGTC	alt_5896_new	4	14	15	13	15	11	8	6	9	6
CGGCATACTTTGTCCC	alt_5896_new	26	22	31	18	23	21	26	14	20	19
AACCTTGGCGAATGTT	alt_5896_new	23	19	25	15	38	19	28	11	34	12
CGCAGCGACCTTTCGT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TACTGTACGCCAATTT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GGGAGACGAAGCGCGG	alt_5896_new	2	5	1	3	3	8	8	1	4	1
AGCGAGTTATGTGTCT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CAATGCATGTGTTTTA	alt_5896_new	5	3	4	3	11	1	7	3	5	1
TGTGGTCCGTAAGGCT	alt_5896_new	32	58	40	45	38	42	60	35	54	40
TAACTACGGTTAATCA	alt_5896_new	16	22	19	17	24	15	15	11	25	14
CTTTTCTACGCACGTT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TGCTTCTTGAGAGGGA	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CGCCTTGCCTGGCCCG	alt_5896_new	16	30	15	23	17	4	28	9	30	15
TTTTCCCAATGGTGAT	alt_5896_new	3	3	2	3	2	4	3	1	6	1
AAAGGTCGTCGTTATT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
AGAGTGTTATCCGTGT	alt_5896_new	2	19	9	7	10	5	9	2	11	2
ATCTTTCCTCTGTTAT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TGTTGTTGAGGTTACA	alt_5896_new	6	20	12	15	10	10	27	8	18	11
GTGTCAGATGTTACCT	alt_5896_new	18	25	27	16	33	19	36	18	38	5
ATTGCAATATCACGGA	alt_5896_new	14	6	5	9	7	9	8	8	2	8
CTAGGTTCAGTGTCTA	alt_5896_new	13	22	11	9	32	16	24	10	30	15
GGTACCCACTAACGGA	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CGACTTTGTCTGAGTG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GCTGCTCCCACCCCAT	alt_5896_new	97	106	107	105	142	79	135	74	137	76
CTTCCTCTCTTACTCT	alt_5896_new	20	31	27	20	33	29	39	9	27	15
AGAGTCAGTTAGGTAT	alt_5896_new	0	3	2	0	1	0	0	0	2	2
CTATCAATCAGCAATC	alt_5896_new	22	25	30	18	23	7	25	11	28	13
GACTTGCCCGAGTGGA	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GTGGGGATATAGACTC	alt_5896_new	11	14	9	10	21	4	17	12	21	6
ATTGAGTGCTTGTACT	alt_5896_new	27	38	23	23	40	30	44	20	48	32
CCTGTTTACACACCCG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CTCCGTCAGAAGCAAT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
ATTGCCGTGTAAGTCT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TCCATTCGGCCCTCGT	alt_5896_new	7	9	4	7	13	9	12	6	7	5
ACTTCAGTAACCATGC	alt_5896_new	13	35	25	18	27	16	35	19	24	12
ACAGGCGGGATTATTG	alt_5896_new	0	0	0	0	0	1	0	0	0	0
GATTCGCCAAGGCTCA	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CATCTAGCTTCCATGT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CAGAATGCAAACATGT	alt_5896_new	22	41	47	31	43	40	40	34	50	34
TCGCCCCCCCCCTTTC	alt_5896_new	60	52	59	56	57	65	46	58	57	48
TTCGAGTGAACCCTTG	alt_5896_new	60	95	67	68	86	51	96	54	83	54
CTCTAAAATGAAAGAG	alt_5896_new	25	46	21	23	53	16	30	22	37	23
CTACTCAATCTATGGG	alt_5896_new	57	110	95	65	139	59	121	50	124	55
GCGGATTGTTCATCGT	alt_5896_new	47	82	48	43	74	30	95	48	116	43
AGGTTATTCTTCGTGT	alt_5896_new	2	0	4	4	0	1	0	1	3	0
TTATACATCAAGGAAT	alt_5896_new	24	35	42	28	48	19	46	23	57	24
TCGATGAGAATTCTGC	alt_5896_new	6	4	12	6	19	13	16	8	15	10
ATCTAAGCTGTTGATG	alt_5896_new	17	25	30	14	30	18	25	16	36	15
TCATGGTATCTCGTAG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GTGTTTCTATTAAGTT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CTATTCCCTATGGCTC	alt_5896_new	4	14	4	6	11	4	9	3	17	5
CAGCCCGCAGCACTCT	alt_5896_new	28	61	37	29	68	28	47	38	52	30
GCTTAGCTAAGTTATG	alt_5896_new	30	33	25	33	35	29	34	18	47	14
TGGCTAATAACTGTAT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GCTCGCATTATTGTAC	alt_5896_new	75	117	94	106	113	77	124	59	121	63
TCGCCCCCCCCTTTCC	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TGTACGGCCCCTATTG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CTATTGCTTTGTGTCC	alt_5896_new	99	121	89	81	139	72	125	61	153	72
TCTGCTGGAGAGTGTG	alt_5896_new	6	14	17	7	30	14	16	10	16	13
TATCAGGGGCTTGTAC	alt_5896_new	24	28	31	23	25	15	26	21	34	26
CAGATGCCCAGAGGTC	alt_5896_new	1	0	1	2	2	0	1	3	3	4
TAAATGCAGGGACGCA	alt_5896_new	56	79	58	63	60	32	81	52	80	46
CTTCTTGTCTGGGGAG	alt_5896_new	2	1	5	7	5	3	7	2	1	2
TTTCTCGTGTCGTCCA	alt_5896_new	0	0	0	0	0	0	0	0	0	0
ATGGTTGGCTTGAGCT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GCCTGTCTTTAGTAGC	alt_5896_new	9	15	7	15	15	10	29	7	17	11
GCTACTTCTGTATACG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TCCTATCATTGTCTAA	alt_5896_new	41	76	51	46	63	39	70	36	80	41
CCGCATCCCTCACTTG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CTGGTATGTAATGGTT	alt_5896_new	2	1	1	0	1	0	0	0	1	1
TCCTAACCCTCAAGTA	alt_5896_new	44	51	31	37	57	33	71	36	49	25
AATGTTACACGTTCAT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TGACCTGTGTACTTAA	alt_5896_new	21	48	31	19	54	31	47	11	50	21
TTTTCATGGAGACCAC	alt_5896_new	16	21	19	17	16	11	9	7	24	13
TGATTGGGTATAGCAT	alt_5896_new	10	24	23	13	20	19	18	7	20	15
TCAACGAATATATAAT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
ACCAGGATCCCGATAA	alt_5896_new	24	41	30	28	44	20	54	26	51	29
GCATCTGAAGTTCCAC	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GATTCTCAGGCTGCCA	alt_5896_new	8	14	19	14	16	10	6	9	11	12
ATCATTCGCCTTGTTT	alt_5896_new	20	26	16	18	12	12	20	17	28	8
TCAATTTACATCCAAC	ref_5896_new	115	176	143	113	174	104	197	99	205	96
CTTAAACGTCTGCAAT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TCGTGCTCCCCTCAGT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TGAGAACGCGGACCCC	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GAACTGTGTTTCTTTT	alt_5896_new	0	0	0	0	0	0	0	0	0	0
AGTAGCAGGTGGTGGG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
GCACCTTATGTAAGTC	alt_5896_new	6	4	3	3	5	2	8	3	9	3
GTTATTTATCCGGGAT	alt_5896_new	22	23	24	21	30	20	20	19	24	21
GCGAACGCTTGCTTCC	alt_5896_new	0	0	0	0	0	0	0	0	0	0
CCAAGTATTAGCTGCT	alt_5896_new	13	13	11	16	18	6	15	13	9	8
CTAAGTAGGAGTTCCG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TTCCGTGGCTCCTTAG	alt_5896_new	0	0	0	0	0	0	0	0	0	0
TGTTTGGGACCTATGT	alt_6006_new	23	44	26	26	35	25	25	23	29	23
CAGTGTTTTCTTTATG	alt_6006_new	45	53	31	33	60	32	46	29	74	30
TTGGATTGTCCTACGC	alt_6006_new	2	1	1	0	3	0	5	0	4	2
CAATTGGATGTTCATG	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GGCACGCAGAAACATC	alt_6006_new	3	4	3	2	2	3	4	1	9	4
ACAGAGTCTTCCAGGC	alt_6006_new	2	7	0	1	1	1	1	0	5	1
TATCCTTGCTTGTGGA	alt_6006_new	46	47	44	47	59	23	60	35	52	24
GGGTAGATGTCAGTCA	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GCACTAAGCATATTCC	alt_6006_new	5	10	8	7	17	13	7	6	13	12
GCGTCCCCGTTTTTTG	alt_6006_new	0	0	0	0	0	0	0	0	0	0
AAAGTAATTCACTTGA	alt_6006_new	27	33	22	22	38	22	49	21	29	18
TTTGCATGATTATGCT	alt_6006_new	51	64	46	34	97	40	86	46	81	35
GATTTTTTGGCTGGAG	alt_6006_new	13	18	11	10	11	7	16	9	12	10
TAAACCAGCCAACTAT	alt_6006_new	0	0	0	0	0	0	0	0	0	0
AATTTTTGTGATCAGG	alt_6006_new	3	9	13	8	14	5	9	6	11	3
TTCTATCCCTCCGCCT	alt_6006_new	0	0	0	0	0	0	0	0	0	0
TCGCTAGGATCAGTTA	alt_6006_new	0	0	0	0	0	0	0	0	0	0
TAAGCAACTCATAAGA	alt_6006_new	10	27	21	22	25	23	30	17	43	12
CTAACCCCGCCAGAGC	alt_6006_new	8	15	5	7	12	5	12	22	19	4
TGCCCACACGGGAGAT	alt_6006_new	73	107	115	79	139	86	119	74	97	72
GTTCGTGACTGATTCG	alt_6006_new	53	54	55	39	49	43	74	41	65	30
GTTCATTAGCTCGTTG	alt_6006_new	5	19	16	6	12	6	14	3	24	8
AGTTCCTAGGACTCGC	alt_6006_new	12	19	22	10	20	10	19	14	19	11
CTTGTTTGAAATGGAT	alt_6006_new	31	18	34	16	29	23	25	25	43	21
AAGCCCACTGCTCATT	alt_6006_new	0	0	0	0	0	0	0	0	0	0
ATCGTTATGCACATGT	alt_6006_new	33	54	26	33	41	24	50	27	52	23
CTCATCAATATCCAGC	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GGACCGTTGCAGTGCC	alt_6006_new	12	20	25	19	27	15	21	26	26	22
GGGCGATCCGTCCAGT	alt_6006_new	35	53	37	35	41	35	57	37	45	29
CTCTTTGAGCCCTTAG	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GCTCGGATAGTATGAT	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GCGCTTGTCAAGGTAG	alt_6006_new	18	30	27	15	19	19	18	13	18	15
CTTTTTAACATGCAAT	alt_6006_new	14	21	21	12	26	12	24	16	23	15
CCACTGCCGGTTAATT	alt_6006_new	79	79	106	74	88	64	112	64	110	53
TGTTAGTGGGAGTTGT	alt_6006_new	19	39	25	24	56	24	47	21	42	15
TTACGTCTGTCCCTTA	alt_6006_new	139	196	163	166	186	147	194	139	206	164
ATAACCAATGATATAG	alt_6006_new	27	24	29	25	40	26	45	26	31	22
CCCAGGGAATAAGCCC	alt_6006_new	41	55	60	45	56	47	76	39	54	37
GAGTGTCTCGCTTCTC	alt_6006_new	49	88	69	55	75	49	98	55	75	55
CGTCCGGGTGTCTAAC	alt_6006_new	10	24	21	16	27	18	28	18	29	16
TGTCAAACTCAGCATA	alt_6006_new	15	31	14	20	13	22	27	23	26	18
TGTGGGTGGTTTTTAA	alt_6006_new	0	0	0	0	0	0	0	0	0	0
TTAGAGTTGGTTGTGA	alt_6006_new	45	53	39	39	46	39	51	24	45	21
AACTGACCAACTGGAC	alt_6006_new	3	7	6	8	7	6	7	3	10	9
CTAAGTTTGGAAGGTA	alt_6006_new	0	0	0	0	0	0	0	0	0	0
ATACATCCTACCGGCA	alt_6006_new	85	114	92	95	108	78	143	79	124	74
CCTGCATTTTTAGGGA	alt_6006_new	17	30	36	19	41	21	35	24	36	20
TGAGTCACCTATTGTC	alt_6006_new	0	0	0	0	0	0	0	0	0	0
ATTCCCTACTGTTATG	alt_6006_new	4	5	2	3	2	3	6	1	5	3
CTCTACATCAGATTTC	alt_6006_new	29	45	31	29	43	24	49	26	42	29
CTCGAATGGCAAATAT	alt_6006_new	32	45	36	41	46	37	57	41	60	23
GTGGGACCGATGGAAC	alt_6006_new	27	35	35	14	39	17	35	15	27	21
GTGCATTGAGGCGAGT	alt_6006_new	204	330	255	228	279	200	363	181	388	217
GGGTCGTAACTCAACC	alt_6006_new	7	3	7	8	9	4	9	5	6	2
TGAGTAACCACCGGTG	alt_6006_new	10	21	19	15	24	22	22	18	21	17
AAGCCTCTTTATTGCA	alt_6006_new	0	0	0	0	0	0	0	0	0	0
TTGGCTGTGATCCAGA	alt_6006_new	5	15	18	8	19	14	15	12	17	6
TGGGCTTCTGGTCTAG	alt_6006_new	0	0	0	0	0	0	0	0	0	0
AATATACTCTTTGGCA	alt_6006_new	21	15	25	8	13	13	32	18	15	10
TGCGCATGTCAACACG	alt_6006_new	56	74	72	50	66	53	76	51	57	46
TCAGAAGATTGTCCAG	alt_6006_new	29	62	46	34	53	38	61	32	63	26
ATTCCCATATGGCGTT	alt_6006_new	39	52	48	35	66	45	81	50	53	37
GCAACCTGTATAGTCG	alt_6006_new	9	10	3	5	6	4	6	2	8	2
CCATACTTTGGATTCT	alt_6006_new	10	8	8	9	11	4	10	4	12	6
CGATACCAAATATGCA	alt_6006_new	24	24	21	21	27	16	31	10	21	23
CGCTGGCGATTGCAGG	alt_6006_new	15	16	15	14	18	7	36	24	28	11
CTGCAGCACGGAATGC	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GTTCTCTTGTACAATT	alt_6006_new	6	14	4	11	5	11	13	5	12	13
TCGCCAGGATTGGGGC	alt_6006_new	6	15	5	13	17	12	12	8	8	7
TTCGATTTGGTTCTGC	alt_6006_new	76	124	121	100	96	98	111	50	134	92
TCCGCCTTCTTGTTAT	alt_6006_new	10	6	11	9	9	17	17	6	23	8
TATCATCATGGCCCTG	alt_6006_new	27	19	38	25	29	23	32	23	32	22
GCGGACAGATTGGAGT	alt_6006_new	32	22	21	23	32	21	31	26	41	15
TATGATCTATAAGCCT	alt_6006_new	0	0	0	0	0	0	0	0	0	0
CTAAACTTCTTTTGCG	alt_6006_new	15	38	39	29	42	17	58	22	40	26
GGTTTTGGAGGGCGGT	alt_6006_new	8	8	12	13	12	4	17	7	9	5
CTAGTTTCACTAACTT	alt_6006_new	0	0	0	0	0	0	0	0	0	0
CCTCCTCTCCAAGTTG	alt_6006_new	28	42	27	26	27	19	22	14	17	9
GCGAAGGAACTCATGC	alt_6006_new	1	8	0	1	8	3	4	4	4	2
TGCTACGGTCTCTTCG	alt_6006_new	26	26	33	18	23	32	37	17	25	14
CTTCTTCTGAGCGTAG	alt_6006_new	59	83	74	68	68	63	110	53	71	60
GTAGATGGTGTCTCCT	alt_6006_new	0	0	0	0	0	0	0	0	0	0
GATAGGCCCAACTATT	alt_6006_new	35	54	51	34	39	52	56	39	62	35
TTAAGTATACTGCTAC	alt_6006_new	11	12	19	6	27	11	23	19	15	10
CGCGCATGTGATTTCA	alt_2134_RC	5	2	3	4	1	1	3	5	6	6
GTCGCGGGTACACTGG	alt_2134_RC	14	18	21	23	25	10	12	14	16	15
TAATTTTCCCTTCCAC	alt_2134_RC	0	0	0	1	0	0	0	0	0	0
CGTTCGGATAGCAACC	alt_2134_RC	286	321	344	281	357	260	350	254	355	255
TTCCTGTCTAATTTGT	alt_2134_RC	72	105	84	81	105	66	123	58	99	63
GCTTTCAACCAGCCGA	alt_2134_RC	4	2	4	3	3	2	4	0	2	1
TTCAGACAGTCCTTAC	alt_2134_RC	19	12	6	5	22	10	16	23	14	10
TAGCCTGTGTCCGAGT	alt_2134_RC	14	20	13	12	26	17	26	6	26	14
TCCGCCATCTTGGTGT	ref_2134_RC	52	93	87	70	96	64	91	50	89	56
TTGCATTGATGTTGAT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
CTTTCCCAAACTTTAG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TCGTATGCGCTTTTCG	ref_2134_RC	46	59	73	47	67	35	63	51	77	39
TGCCGTGATTTAACCC	alt_2134_RC	181	280	247	203	302	159	325	185	321	164
ATTATTAGATTGTCCA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTGTGTGATCGGAATG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
GCCGTGCCCATAGGTG	alt_2134_RC	21	24	17	16	21	17	29	19	22	17
TTATTCATTCTGGATC	alt_2134_RC	15	29	13	19	22	18	17	13	16	12
TTACTACGAACTTCAA	alt_2134_RC	22	19	20	18	17	15	8	19	15	11
TATTCCTCCCGGGTAC	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
ATTAGCGATTACTCGT	alt_2134_RC	51	72	80	56	82	55	86	56	63	66
TTTCCCTAAAAAGTAT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
ACAGAATGAGCGCTCA	alt_2134_RC	17	19	27	20	18	11	13	18	7	16
TTAATCTGGTGCTGGT	alt_2134_RC	7	19	20	11	15	11	26	6	19	9
GATTGCGGTGTTTAAA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
GCTCCAGTGAGTCACC	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TCCTGATACCCGTTTT	alt_2134_RC	101	195	143	112	215	97	236	79	235	102
GGGGCGCCGACGTACT	alt_2134_RC	4	3	10	2	12	4	9	2	8	9
CTTCACTTTTCAGCGG	alt_2134_RC	14	10	15	13	11	24	23	19	11	12
CTCCTTACCAGGTGCT	alt_2134_RC	45	42	40	32	54	32	46	28	52	21
GCCCTGTCGTCAAATC	alt_2134_RC	0	0	2	0	3	0	1	0	2	2
CGTTCCAGCTGGCCCA	alt_2134_RC	9	2	8	4	5	4	10	6	12	4
GGTTGGCTGGAAGCTA	alt_2134_RC	77	77	101	73	95	56	107	62	88	77
GGTCGACGTACACTGT	alt_2134_RC	43	80	65	41	74	46	73	37	64	43
CCCCCTGCGTTGCAAG	alt_2134_RC	1	3	5	0	2	0	5	1	10	1
CAAGTCTGAACGTAAT	alt_2134_RC	41	39	22	15	50	36	56	27	46	21
GTGGTCTTTCTTAGAG	alt_2134_RC	12	29	21	15	16	13	36	17	23	16
GTTCCAGATCGCATCG	alt_2134_RC	6	7	13	8	12	9	7	8	12	4
TCACGGGGTCCCTTTT	alt_2134_RC	45	42	58	68	63	55	61	42	55	39
ATTTTGACCCACAGCA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
AGCCGTGATTTAACCC	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
CTAACTGATACGCACT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTGGGGATACCGGAAC	alt_2134_RC	5	12	7	10	11	9	7	3	5	5
TCTCCATGACTGTAAG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TCTACCCCCTCCAGAC	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TAAATCGGCACAGTAT	alt_2134_RC	13	22	15	11	22	11	15	12	10	14
CTGCGCGCCATTTAAA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
AGGTATACTTGGATGA	alt_2134_RC	41	46	43	27	37	34	45	37	52	42
AAATACGTAAGGTTGG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
ACCGTAAGCGTATCGA	alt_2134_RC	40	38	42	42	51	30	46	35	67	42
TCAGGTGGCAATTGCA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTGATCACGTAA	alt_2134_RC	11	18	16	13	21	9	17	9	10	14
CAATCATCTGTCTCGA	alt_2134_RC	39	88	63	57	100	53	88	39	98	44
GGCGCATGCTTATGCG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
CCAAGCGTAGGCTGCA	alt_2134_RC	41	52	60	57	70	53	67	36	57	45
GTAGTGCCGCATCTGG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTTCATTGAAGTCTTA	alt_2134_RC	86	109	98	75	146	86	144	73	136	80
GCTTAGCCATACGCCG	alt_2134_RC	23	39	34	32	41	25	36	27	61	27
CTATTACTATACGACT	alt_2134_RC	5	4	10	3	6	4	2	1	5	3
CTTTAGATAGTCAGTG	alt_2134_RC	1	0	0	0	1	1	0	0	1	0
TCCACGATTACCGTTA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TCAATCAAAGAAACAT	alt_2134_RC	39	53	37	46	38	32	52	45	42	35
GGATCAAACTATGCTA	ref_2134_RC	34	91	31	29	91	27	69	18	85	21
TAAGGAAAAGATCAAT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
ACGTGTCCTGCAGATG	alt_2134_RC	1	3	0	1	4	2	0	3	6	0
AATCCCTACAACAGTT	alt_2134_RC	50	88	55	48	110	47	103	44	97	49
CGCATGATATTAGTGC	ref_2134_RC	75	81	58	53	99	62	103	57	95	42
AATTCGTCCCGGGGAT	alt_2134_RC	27	32	21	22	34	20	38	24	50	25
TTGGAAAAGATCTCGT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TAGGCATTGGTCCAAA	ref_2134_RC	134	189	164	169	197	139	207	121	242	157
TCAAAGTGTTTTAGTG	alt_2134_RC	20	18	17	10	34	12	30	13	27	12
TAGTGATACAGGGTGC	alt_2134_RC	27	24	34	26	44	31	21	37	27	18
CCGTCATCCTGTCTTG	alt_2134_RC	5	10	16	12	20	17	15	12	22	9
CGTCAGAGAAATTGCT	alt_2134_RC	46	55	59	48	48	41	52	44	35	39
ACCCATACATCAACGG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
CATACATGATCGGGCG	alt_2134_RC	53	51	55	44	56	60	77	47	70	46
GGCATCGCGCACAGAC	alt_2134_RC	7	6	5	8	16	12	12	8	10	4
GCTTGATGTGGCCGCT	alt_2134_RC	35	46	42	34	45	23	43	15	42	17
TGCGTATCGGGTTCAC	alt_2134_RC	12	8	12	10	10	14	16	9	19	8
ATCCCCCCATGTCTCG	ref_2134_RC	58	72	67	54	85	56	114	56	124	28
CAAATAGGCTGCCTCG	alt_2134_RC	16	39	20	25	19	22	37	21	36	21
GATAGTGGTCCTGCAA	alt_2134_RC	19	45	33	28	33	23	44	25	45	31
CAAGACTTAGTTCGTT	alt_2134_RC	21	31	19	18	42	21	34	20	32	17
GGCATCGTTGGAAAGT	alt_2134_RC	12	8	11	13	8	9	10	10	11	11
GAACTTGAGTACGATA	alt_2134_RC	51	77	67	46	100	60	90	63	118	62
CCCGCCTTACTCAGTC	alt_2134_RC	5	106	17	11	106	7	103	15	99	13
TACACACTTAGTTGTT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTACAAATGTGTACGG	alt_2134_RC	20	17	24	32	37	24	24	18	39	19
TTTCCGGAGACGAGAG	alt_2134_RC	76	69	84	65	58	70	52	43	84	56
TGCGACTTGGTCTGTA	alt_2134_RC	343	406	354	289	423	299	444	278	510	299
CTTCTTGATCCATAAC	alt_2134_RC	9	8	7	6	8	7	7	4	5	6
CGTGTATCTATCGGGT	alt_2134_RC	1	2	6	2	4	2	1	4	3	1
AGTAGGCCTCCCCAGG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
CTATTGCCACTTTTAA	alt_2134_RC	24	34	38	28	41	25	56	22	42	37
ATATCCGTCGGGTTCC	alt_2134_RC	57	72	56	62	73	45	95	77	62	57
GCCGAGTGCCCTCGAA	alt_2134_RC	32	50	58	45	56	49	49	40	63	41
GGTGTTAAGTTTTTGT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TGCTCATGTCTCCGTT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
AACTATAGTGGTTCCA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTCCCTGCTTGCGTCG	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TCAGTAGCCTACCTTC	alt_2134_RC	29	82	50	49	71	30	81	42	111	30
CGATTTGGTCTTTTGT	alt_2134_RC	21	25	30	37	33	20	40	18	39	34
GTCTATTACTGTCAGT	alt_2134_RC	38	63	58	44	69	29	63	34	77	19
ATGTGCTTGCACTCGG	alt_2134_RC	52	66	59	51	57	37	71	31	79	53
ATTTGTAACGCTCAGA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
GAATAATATTCTTACC	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTGTTACCTTTTTGTA	alt_2134_RC	14	13	10	20	21	7	24	9	17	8
TTCACCGGAACTCGGA	alt_2134_RC	27	42	56	32	46	31	44	44	74	39
TTCGTATACGAGCAAC	alt_2134_RC	9	19	35	22	24	23	23	13	18	25
CAAACCCTGTGGACTT	alt_2134_RC	19	31	17	17	27	14	40	19	30	19
CTTTCCAGAAGATGCA	alt_2134_RC	11	6	9	9	6	14	11	6	9	7
TTGAGTAGAATTTGGG	alt_2134_RC	10	13	13	18	15	6	16	11	12	7
TCTCTAGTCCCATTTG	alt_2134_RC	4	8	8	16	11	8	13	7	10	5
TTGGTCCCGGTCTAGC	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
TTTATTTTAAAGCCTT	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
CTCCAATTTCTTCCAG	alt_2134_RC	54	94	61	54	79	67	86	27	94	47
CTTGCTTAGTCGTTGA	alt_2134_RC	0	0	0	0	0	0	0	0	0	0
ATTATGAGTGTCCCAC	alt_2134_RC	10	13	13	15	8	9	10	13	24	4
TCTGGCGCGCAGATTT	alt_2134_RC	5	1	2	1	2	1	2	1	0	3
CTTCAGTCTGTTATGT	ref_1402_fdr	23	36	28	26	24	24	47	15	33	26
ATAATTTAGAAATGGC	ref_1402_fdr	31	20	31	33	12	40	28	39	27	18
CACTTAATTTTTCGTG	ref_1402_fdr	40	57	57	65	53	44	61	35	54	51
CGCTTAACCTTACATG	ref_1402_fdr	64	61	69	48	60	57	74	59	66	56
ATGGCAGCGGTATGAG	ref_1402_fdr	14	17	8	10	10	19	12	17	14	8
AGTTTATGTGCGGATA	ref_1402_fdr	53	54	39	40	61	43	62	42	60	46
ATACCAGTTGTCCCTA	ref_1402_fdr	32	42	37	29	32	24	48	27	46	30
TCACCGTGACTCCGGC	ref_1402_fdr	137	153	148	135	161	116	139	121	172	92
TGGGCTCCGCAGACAA	ref_1402_fdr	22	17	17	21	24	29	23	22	18	14
CAAGCTGGTAGCCCGC	ref_1402_fdr	12	8	12	8	3	13	15	18	9	12
CTATCTCACCTAGTAC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
CAAAATACCGATCTCC	ref_1402_fdr	58	59	52	53	73	48	58	63	64	65
TTCCGTGACTCCTGAA	ref_1402_fdr	18	21	18	12	16	14	16	11	20	15
CTACCTTGAGTCTTTT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGGCGCTTGTACC	ref_1402_fdr	23	22	21	25	23	11	20	26	26	13
CTACCTTTACTCTAAC	ref_1402_fdr	12	17	21	26	10	20	23	19	28	16
CTTTGAGCTGTTGTTT	ref_1402_fdr	103	95	84	137	98	94	120	98	140	92
TGGTGCAAGGCTATAG	ref_1402_fdr	79	92	128	101	96	90	108	100	97	88
CATATGAGGGTCCTGT	ref_1402_fdr	21	20	33	35	30	31	35	22	24	25
TCAAGCTGTTTCTAAC	ref_1402_fdr	15	11	19	12	12	14	15	13	11	8
GCGTCTCAGACACCCG	ref_1402_fdr	19	27	20	23	22	16	16	21	23	15
ACGACTGTGTCATCTG	ref_1402_fdr	33	43	50	35	27	36	43	34	26	21
GTTATGTTATTACATA	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTAGGCGACTAT	ref_1402_fdr	29	47	42	35	34	37	29	26	43	31
GTACGGATCTCCACCA	ref_1402_fdr	8	22	16	18	15	7	17	13	14	10
AACCATCAAGCCGGCA	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCGTCCTGGTAAG	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTATTGCTCTGCT	ref_1402_fdr	6	13	4	4	27	1	25	8	29	9
TTATGCATATTTTAAG	ref_1402_fdr	45	34	22	44	38	39	38	30	35	30
TTGCAGCCATTAGTAT	ref_1402_fdr	6	6	13	10	10	10	15	13	6	12
GAAGTTATCCAGCTAG	ref_1402_fdr	54	56	72	51	51	50	41	28	54	42
ACTGCCTGTATAGATT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TACCTGCGCACTCCGA	ref_1402_fdr	320	278	328	267	283	270	285	270	299	239
TTTTCCTGGTTCAATC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTGCACCATGCCT	ref_1402_fdr	121	179	154	142	189	122	214	113	187	128
GTTTGTTAGGCCACAC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTCAATTGCCAG	alt_1402_fdr	45	44	50	45	69	51	56	61	58	48
GCCGTTAAGCCGAGCG	ref_1402_fdr	92	103	155	135	126	107	131	130	120	116
ACATTAAATATGACGG	ref_1402_fdr	6	5	10	4	4	5	9	15	13	4
TGTGTGGCGTTTGGTT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGCTATGGCTACG	ref_1402_fdr	44	41	39	34	35	46	43	31	39	39
ATACTAGATGTTCTCG	ref_1402_fdr	6	12	15	7	10	14	15	11	15	13
ATAGCGGGACCAGGAG	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
GTAGAGATATGCGGAG	ref_1402_fdr	62	59	70	39	54	47	52	59	68	53
ACGCCACTGGGGCCGT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
GATACCCTCGAATTTG	ref_1402_fdr	248	305	305	259	299	241	275	221	318	212
GGCTTCCTCGGCTACA	ref_1402_fdr	5	18	16	17	13	9	18	7	14	12
ATTTCATAACTCCCCG	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
CGGGATGGCACCTACT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCACCACGGTGAC	ref_1402_fdr	27	31	43	41	28	30	22	29	37	41
GTCGACGGACGCATAA	ref_1402_fdr	64	52	78	53	48	56	57	58	65	54
CTACACCCCTTTCATT	ref_1402_fdr	30	47	53	46	69	45	62	41	64	40
GTCCATTAAGGTACGA	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCACACTTAGCAT	ref_1402_fdr	9	18	17	18	16	20	21	11	16	7
TTTTTAAGCTGTTCAT	ref_1402_fdr	9	6	4	6	5	2	5	2	5	2
AACCTTTTTTAAAGCG	ref_1402_fdr	16	17	19	22	19	19	15	26	26	11
GTTTACATTGGTATAA	ref_1402_fdr	39	24	32	42	33	26	31	31	35	22
TTCCCAGAATTCTGGT	ref_1402_fdr	6	10	10	10	9	12	11	13	10	9
CAGCCTTTGTCATTTC	ref_1402_fdr	15	45	23	19	47	24	38	17	43	12
CTCCGTAAGCCCGTTG	ref_1402_fdr	383	403	402	365	426	332	437	332	439	299
AGATATCGGAAATTTG	ref_1402_fdr	35	33	52	31	34	32	41	27	48	38
CGTGAATGACGTAACT	ref_1402_fdr	79	76	125	88	76	90	105	78	107	78
CTTGTCTGTTTTTTCG	ref_1402_fdr	0	3	4	4	0	2	0	2	1	1
TTGCAGCATTGGAATT	ref_1402_fdr	53	67	72	60	83	59	73	63	78	53
CACCTGGTGCCTACTA	ref_1402_fdr	13	17	13	9	20	17	16	16	12	15
CAGACCTGTTTGCTCT	ref_1402_fdr	26	39	37	27	47	21	23	21	34	20
GTCTATTCATTAGTGG	ref_1402_fdr	11	18	15	22	17	12	20	18	33	12
TTCATAAGTTAGTCGC	ref_1402_fdr	43	65	50	34	31	38	43	21	56	30
TGTTGGTGTTCGTGTT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TGGACGAACTCTCCTC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTCTACTCTGGATGTG	ref_1402_fdr	20	23	24	25	26	20	34	26	25	17
TTCCCTGTTTATCCCG	ref_1402_fdr	56	53	64	59	59	42	56	47	48	44
GGAGTCACCGTGTTGG	ref_1402_fdr	2	3	2	5	4	2	4	1	0	2
TGGGTTCGTCGTGTTT	ref_1402_fdr	2	4	5	1	2	10	4	4	10	1
TACCCCGGCGTACTAC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
CACAGCATATCCTAAC	ref_1402_fdr	34	51	48	41	42	40	40	36	47	37
GCTTGGTTGTGGCCCC	ref_1402_fdr	21	27	31	24	20	25	28	23	38	20
CCCGCTCTCCGGGCCC	ref_1402_fdr	9	17	15	10	21	10	23	13	20	16
TTTTCCAATTGGTTTC	ref_1402_fdr	4	1	2	2	0	0	3	2	4	3
ACCGCCGTGATTCAGC	ref_1402_fdr	86	72	98	93	72	66	103	88	94	77
GTAGGCTGGGTGTATG	ref_1402_fdr	21	24	25	21	25	17	20	15	15	22
TTAACCTATACGCAGT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATGACTGCATCCAGTA	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
GGGGGTCAAACTGCCT	ref_1402_fdr	19	28	15	14	38	16	39	13	24	19
GGACCACGCACAATCT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
ACGCATCTTCAACTTT	ref_1402_fdr	22	32	33	33	30	25	23	18	20	20
ACTCATGTCAGATCAG	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGGAATTAATGTT	ref_1402_fdr	59	85	70	60	63	63	69	51	67	50
CTGTTGAGCACGCTTA	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
GGTACCCGTTTAGTCA	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGTTCTATCTGCC	ref_1402_fdr	40	27	38	33	28	28	20	32	36	26
CAACTGGAAAAGCGCC	ref_1402_fdr	39	45	39	45	50	37	39	47	43	39
GGTAAAATCATTTAGG	ref_1402_fdr	18	28	14	17	21	23	34	36	16	25
CCCGGTCACGTGCTTA	ref_1402_fdr	20	45	28	18	47	28	46	29	55	26
TGGGGATTCCTGGCAA	ref_1402_fdr	26	45	49	40	21	24	36	28	30	33
TTCCCACATCTTCGGC	ref_1402_fdr	15	18	14	30	31	26	35	26	27	23
TAACTAGGGCGTTTCT	ref_1402_fdr	10	14	22	19	8	17	16	19	16	10
TTGTGTTGCCTTGCTT	ref_1402_fdr	85	112	108	87	104	89	109	78	99	70
CATATAGGAAAAGGCT	ref_1402_fdr	25	17	20	29	24	23	19	20	33	16
TAAGCGCCGTTGTTCT	ref_1402_fdr	65	72	81	57	63	67	63	67	64	55
TGAAATTATGTCTACC	ref_1402_fdr	74	86	89	79	74	74	80	64	100	93
CGGTTGCAGTTAACAT	ref_1402_fdr	22	31	17	36	34	18	49	25	33	20
CGTTCAGAGCTTGGTG	ref_1402_fdr	3	5	16	11	10	10	6	6	6	5
TTCTGGCCTACCGGCT	ref_1402_fdr	4	8	8	7	2	4	13	3	7	3
TTCGTACTTCTGTCGC	ref_1402_fdr	5	18	18	15	19	6	15	17	9	13
CCTATGGGGAGTGGTG	ref_1402_fdr	38	63	53	77	68	54	76	40	70	55
GGCCTAGTGAACGTTG	ref_1402_fdr	109	74	131	83	73	99	79	84	100	78
CGTTCAATGCGCAAGC	ref_1402_fdr	16	18	26	27	21	16	16	21	20	18
TGTGGGCTAGGTTACC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGCGTTAATGTAA	ref_1402_fdr	39	30	40	43	29	20	30	35	31	25
GTGCGCTCCGGGTGTT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
AAAAATTGACGTGTTG	ref_1402_fdr	10	22	22	30	8	19	23	16	18	25
ATAGGCCCAGCTCCAT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGTACCGTCTGCG	ref_1402_fdr	11	16	13	12	14	3	13	6	15	7
CGTATTTTGCGTAAAT	ref_1402_fdr	7	12	8	6	9	7	8	6	8	4
CTTTTTCCTCCTTATG	ref_1402_fdr	6	16	17	16	13	9	14	15	11	10
CTAGCCGTACTAGCTT	ref_1402_fdr	10	8	16	13	14	12	11	14	14	15
CCGCCTAGAGTTAATT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
CACCGCAAGGAGCCAG	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
TAGGCGCCTAAAGCCA	ref_1402_fdr	31	43	26	30	37	29	19	32	33	21
CTGGCTTCTCGCGTAT	ref_1402_fdr	17	26	20	14	27	17	27	9	21	15
GTTCTGTTTACAGATA	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGAAGTATTTCTT	ref_1402_fdr	47	68	72	41	61	48	60	54	79	48
CTTCCTTTCTGCAGCA	ref_1402_fdr	33	24	29	18	15	24	28	14	26	19
AAACCACCTATTGTCA	ref_1402_fdr	50	63	73	47	44	59	81	54	76	53
GTCGTTCAATCCCACG	ref_1402_fdr	6	7	3	9	9	3	3	9	1	7
CATGCGAGCTCGCTGT	ref_1402_fdr	5	2	4	2	5	3	2	4	6	3
CTGATGTTCGTATCGC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
GTACTGTCCATTCAAC	ref_1402_fdr	4	6	4	5	1	5	5	6	1	1
CAATGGCTTGTGCTAG	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
CGCTATCGTATTATTT	ref_1402_fdr	70	69	78	68	80	75	96	58	53	68
GTATGGATATAGACTT	ref_1402_fdr	33	30	40	36	42	24	42	32	39	35
CAAAATGGCGATATTT	ref_1402_fdr	41	15	36	29	18	26	22	24	17	35
ACATTGGATCACCCTT	ref_1402_fdr	39	33	36	39	31	29	21	42	29	30
AATTTGTGTCGCTGAG	ref_1402_fdr	49	51	64	57	48	64	64	55	55	30
TATTCAAAGCTGGTAC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
AGACTTTTCTGTATTA	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCCATCTTTCTTA	ref_1402_fdr	17	12	33	17	24	16	25	16	20	13
GCATAGTGAGTTAGGA	ref_1402_fdr	44	51	56	31	38	41	46	43	41	41
GACTAAACCAGGTCTT	ref_1402_fdr	117	124	161	110	148	111	147	120	178	142
ATTCCGGGATTGACAC	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTAGAATACGTCT	ref_1402_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTCATGCTTACT	ref_1402_fdr	1	1	3	2	3	7	2	1	2	2
ATTTAAAGGACACCCA	alt_2029_RC	25	12	37	24	19	19	7	33	16	23
GTTGTCACTACACGGC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GAAGCTAGGACTGGCA	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TGCGACCCGTATCACC	alt_2029_RC	9	5	14	9	5	10	8	11	6	11
TCCCTCCACTGCGGCA	alt_2029_RC	58	39	98	73	49	58	43	42	50	71
GCTGGACTCGGCCTCT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTCAGATGTTCA	alt_2029_RC	11	4	15	9	12	15	10	16	8	11
GAAACATGTATTCTAT	alt_2029_RC	413	214	536	422	231	400	196	416	225	393
CCGAGTTTGACCGGTT	alt_2029_RC	25	13	23	19	13	19	17	20	15	14
TCCGCGGTGTATTCCT	alt_2029_RC	79	39	80	74	42	73	41	80	51	66
CTCACCCTTGGTTGCT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GCCGTTCTTTCCGTCA	alt_2029_RC	54	41	60	39	37	34	41	39	26	47
GTAGTATTTTTAGTCG	alt_2029_RC	67	48	71	55	36	29	34	55	35	37
CGGCGGCTTCTATGTG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TGTCTCATCCTCAGGT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TCTCCATCCTTTAACA	alt_2029_RC	6	7	14	9	13	14	8	7	5	10
ATCCCCGATCCTGATG	alt_2029_RC	244	202	287	266	178	219	240	225	209	197
GCCCTGTCGATTCTTT	alt_2029_RC	26	23	30	27	27	28	21	21	30	17
TCCACTAGAACGTTCG	alt_2029_RC	24	26	27	37	29	26	30	31	31	30
ATAGAGCAGGATACAT	alt_2029_RC	17	9	21	20	12	16	15	11	27	20
AAGGTTTGGTGGATTT	alt_2029_RC	1	3	5	7	1	1	3	2	6	5
AGGAAGGTTCTGTTAC	alt_2029_RC	45	30	67	65	35	41	27	53	31	47
CATTTTTCGGCACCTC	alt_2029_RC	171	76	216	143	105	146	119	157	106	149
TTCCCACATGAACACG	alt_2029_RC	131	76	193	178	65	147	58	151	72	109
GGTCTTGCACTTGGAT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
ATTGATAACTAACTTC	alt_2029_RC	167	107	224	161	100	163	130	178	109	150
CCGCTCTTTCTCTTTG	alt_2029_RC	11	7	14	14	12	22	6	16	7	12
TTAACTGAGACAACCT	alt_2029_RC	5	2	5	4	3	9	8	5	6	7
ACCGATCTGCTTTTTC	alt_2029_RC	132	111	137	90	92	104	112	96	124	114
GTTGCTATAACACATC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GATAGGCTCTCGCCGG	alt_2029_RC	118	74	146	129	71	112	71	93	71	107
CTCGGGATCGTGGGGA	alt_2029_RC	3	0	5	2	2	1	7	6	0	4
AGAGTGCCGCAATATC	alt_2029_RC	42	32	83	56	33	60	36	51	49	55
ATACTTTTTATGGGCA	alt_2029_RC	9	1	5	8	6	8	7	2	1	4
AGCGGTAGCTACACAG	alt_2029_RC	33	10	39	20	19	24	16	27	21	23
AATACCGTAACGGGGC	alt_2029_RC	25	25	42	49	26	40	17	36	35	34
TCCACTGTTGCCGTGT	alt_2029_RC	44	20	43	40	19	25	13	36	29	33
CTCGCCACGCTATTGG	alt_2029_RC	35	31	47	33	28	33	19	48	25	42
TTTATCGGTGCTGCGA	alt_2029_RC	44	37	79	34	27	66	30	40	28	56
GTTAGTGGGTTGTTTG	alt_2029_RC	14	8	21	20	11	29	12	12	13	13
CTTCGCGTTCTAGTTG	alt_2029_RC	8	6	5	9	2	6	6	5	4	6
TATGGTACTACAGGAC	alt_2029_RC	15	1	10	10	9	9	5	8	4	4
AAATTACAAGGGACGA	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GGCTCAGTTATCCAGG	alt_2029_RC	120	70	144	113	90	134	87	104	82	109
CCCACGCTGTGCCCTA	alt_2029_RC	21	10	38	13	20	22	19	27	14	21
ACAGCACAAAGAGTCG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
CTTTCCTTCTAGTACG	alt_2029_RC	110	68	143	124	89	94	68	114	84	91
CACTTTACCGTAGTGC	alt_2029_RC	18	42	25	19	47	24	48	17	42	15
ATATTTAATCGGCTCT	alt_2029_RC	27	9	30	21	10	16	19	11	6	19
ATCATTCATTACCCGC	alt_2029_RC	77	53	104	65	60	65	65	77	40	73
ACGGAGTTTGGGCGGT	alt_2029_RC	35	14	33	30	19	20	16	21	13	20
TAAACGATGAATTTAA	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TATGATGAGGCAATGT	alt_2029_RC	221	157	255	218	149	233	159	223	143	177
CTCCAATGTACGTCTC	alt_2029_RC	24	15	27	31	17	25	19	37	15	19
AGTCTTCGGGCGCATC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TCGTTCTGTCGGGGAG	alt_2029_RC	347	160	390	290	170	266	183	245	182	244
GAGGCCTCAGAGGAGA	alt_2029_RC	34	14	49	31	22	43	14	36	22	21
GTGGGTTCATTTTAGC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
CACGCCTGCATTCGTC	alt_2029_RC	72	56	119	85	72	64	51	70	82	80
GCTATTTCCTGTAGCG	alt_2029_RC	10	10	21	13	10	14	11	12	6	14
TGTAATGTCTAAACGT	alt_2029_RC	107	74	152	108	79	114	83	104	74	121
GGGACCCGAAATTCGG	alt_2029_RC	13	4	10	17	9	12	14	10	12	18
CTGATGCGGTCAGGCA	alt_2029_RC	38	19	39	38	40	44	30	40	33	33
TGGAGGCGGGGTCTGC	alt_2029_RC	43	39	49	45	35	39	38	38	27	44
TGTTTGGCCACAATCC	alt_2029_RC	32	15	44	42	20	26	18	22	28	33
GACTGGCGTTTAAGGC	alt_2029_RC	38	28	45	49	26	49	33	53	25	33
CCCGGCTACTCCAATC	alt_2029_RC	10	11	10	12	11	9	17	9	9	5
AAATTACAGGGGACGA	alt_2029_RC	18	18	30	24	17	22	15	33	16	22
CGCCGCCTCGCCTACA	alt_2029_RC	33	20	55	56	25	37	36	47	40	37
GGTCATGTGAGTAATC	alt_2029_RC	104	38	108	86	51	83	45	93	48	84
TAATGAATCCAACGTT	alt_2029_RC	13	4	19	13	10	9	6	10	6	11
GATCACCGCCTCCCTG	alt_2029_RC	20	15	21	31	14	36	17	20	30	22
ACCCGTAGGGAGTAAT	alt_2029_RC	8	1	6	3	6	5	5	5	4	7
AGCCGTTACGAGGTTT	alt_2029_RC	13	3	14	12	6	8	11	13	2	8
TTTCAAGAAGTCCTTT	alt_2029_RC	18	11	17	23	16	10	10	22	9	15
GAAACGTATGATCCTG	alt_2029_RC	12	10	18	22	6	20	11	20	8	13
TTGTATTTGTCATCAT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GCCCAGTTCGTGGAGG	alt_2029_RC	132	51	128	105	72	94	51	125	73	83
ACATTTTGCGACTCTG	alt_2029_RC	127	62	145	153	57	122	83	96	60	112
TTCTATGTGATCTTGG	alt_2029_RC	6	5	2	9	6	8	7	8	4	8
TTCGCACGGACGGGTC	alt_2029_RC	57	45	60	65	28	73	30	45	29	73
GTTGTTTATGTGGTCA	alt_2029_RC	82	38	89	78	45	60	54	59	35	67
TACAGAGCCTCGGGCT	alt_2029_RC	522	303	611	517	315	491	275	482	307	436
TAATCGGATGCTTTGT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TGTAGCGCCTTGTTAT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TGCACTTGGAGCGGCC	alt_2029_RC	416	278	532	468	235	408	253	380	235	399
TCAGCACAAAGAGTTG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGGTTTTGTTAC	alt_2029_RC	11	21	15	12	44	14	28	10	39	9
GACAAACTTTTCCTCG	alt_2029_RC	83	46	95	63	38	60	45	57	45	66
GAACTCAGTTTCTCCT	alt_2029_RC	45	33	33	43	21	41	22	24	30	28
CACTCTTGTGCATTTA	alt_2029_RC	7	6	18	10	8	9	9	8	13	6
TCACTGGGATTAGTTA	alt_2029_RC	24	10	34	25	24	33	21	19	23	15
TTATCACTTGGATATC	alt_2029_RC	15	18	10	15	7	17	6	21	9	19
TATAACTTATGTAATT	alt_2029_RC	12	11	11	9	10	7	15	10	11	12
TGTACTTACTAACTTT	alt_2029_RC	115	41	161	106	74	126	65	137	96	108
GTTCATCTACCACTAC	alt_2029_RC	234	177	278	223	153	223	127	219	116	200
GGGCTCTCATTTAGTT	alt_2029_RC	190	149	268	201	134	219	133	221	132	219
GGTCTTTTCACGCCCT	alt_2029_RC	47	41	75	55	49	47	41	51	55	45
TCTTGGTCGTTGTACA	alt_2029_RC	25	18	27	20	21	27	29	33	21	16
AGCGTTCCTTTACAAC	alt_2029_RC	41	28	35	33	24	15	29	41	31	42
CAACCGGAAGCGGTCC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TAGCTCGTAGATGCTA	alt_2029_RC	100	48	134	87	81	90	75	79	68	84
GTCCGTGTCTGTGTTA	alt_2029_RC	62	30	73	69	47	67	40	65	53	60
CCTCTACCCGGACGGC	alt_2029_RC	13	7	14	16	10	9	8	13	11	16
ATCATCACATCATGTT	alt_2029_RC	139	82	161	147	62	144	89	127	82	93
GCCTTATGTTGTTCAA	alt_2029_RC	132	93	160	141	107	122	91	140	97	122
TTTCATTTTAAGGTTT	alt_2029_RC	2	4	6	8	4	10	1	3	5	7
TGTTATCCAAGTTAAT	alt_2029_RC	63	25	86	46	39	55	28	54	31	45
GGAGGCACTATCTTAG	alt_2029_RC	80	47	120	62	50	93	44	86	53	60
GGCCGTTATCCAGGTT	alt_2029_RC	80	64	93	90	70	73	71	66	70	72
TCGGAATTTTTCGCTC	alt_2029_RC	75	55	117	87	52	90	45	77	59	76
GTGTGGCTCGCAAAAT	alt_2029_RC	29	21	35	42	24	25	23	29	23	34
TCTAATTTCAGTGGCG	alt_2029_RC	817	482	1011	783	510	840	505	788	539	726
AACGTGAATTGTAAAC	alt_2029_RC	23	13	37	29	9	31	27	31	23	23
TGGCACTCTAAATTAC	alt_2029_RC	76	29	85	60	42	59	44	45	37	58
GTCGGTAGTGTATAAA	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
ATGACCACGGCATACA	alt_2029_RC	117	81	133	117	76	88	78	118	83	103
TAATATTTTCACATAG	alt_2029_RC	50	25	40	44	26	44	28	39	18	33
CCCCCGTTTATAGGTC	alt_2029_RC	13	9	24	22	10	19	15	18	17	25
TCGCTAACACACTAAT	alt_2029_RC	199	88	210	190	106	185	92	208	127	176
TACGTTGACCCTCAAT	alt_2029_RC	1	0	6	8	2	12	6	3	3	5
ACCTGGTATTGTATTC	alt_2029_RC	73	38	85	99	31	77	43	65	40	68
TGTAGTGCTTGCACGC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
AAACGCTAACACGCGA	alt_2029_RC	28	13	44	30	11	22	16	34	14	30
TAGCTTCTGGGGTATT	alt_2029_RC	55	34	53	51	26	45	48	34	22	50
GCTATTGCGTATCGAA	alt_2029_RC	30	22	46	38	23	37	15	41	22	35
CATAAGGATGTTTTAG	alt_2029_RC	272	143	278	275	156	268	163	228	206	225
GGGTTGAGCGTTAAAG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TGTGGTAATCATCCCA	alt_2029_RC	157	109	165	146	105	136	104	129	107	121
ACATATGTTTCCTGCG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TTCCATTTTACGTTTG	alt_2029_RC	108	49	118	93	45	90	63	97	68	78
CCCCCCTTTACGTCGT	alt_2029_RC	80	68	74	81	64	73	77	78	55	59
TTACTTAGTGCTACCA	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
AAGCTATCTCGGAAAT	alt_2029_RC	43	28	66	42	36	45	37	44	41	45
TGTTACGCTCATATTG	alt_2029_RC	8	8	23	10	10	16	4	10	9	4
TCGGCCCCCGGTGTGG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TAGCCTGTAATCTTTG	alt_2029_RC	102	61	88	103	64	74	51	90	63	86
TCCGTGAGTAAGGGGT	alt_2029_RC	31	27	38	37	28	48	31	46	31	43
TGCATTGACTGGGGGG	alt_2029_RC	2	2	6	2	2	5	0	5	3	1
CGCTTCTATGCGCTGG	alt_2029_RC	76	28	76	78	32	74	36	59	42	75
GGGCTCAATTTCTTAT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
ATCTACAACAGTTGGT	alt_2029_RC	27	22	35	29	22	22	24	45	21	29
TGAGTCGTATTGAACA	alt_2029_RC	42	29	78	55	36	59	35	52	53	45
GGGCTCCATCTCTCTC	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
CTAGCGATTTATTTTA	alt_2029_RC	16	11	24	12	13	11	11	16	11	15
ATATGTGATTGCCCGG	alt_2029_RC	31	24	44	51	27	31	26	34	31	33
TCATGAATGTCTTGTA	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
CTTACTAGGGGTCCAC	alt_2029_RC	99	66	98	77	57	73	62	96	67	64
TCGCCGTGTACGCCTG	alt_2029_RC	64	45	79	77	59	63	63	58	63	72
ACACCATCGCGTTCTT	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TTAGCTTGGCTATGGG	alt_2029_RC	59	32	66	39	34	60	39	57	39	52
TACCTTGCCCTGCGTC	alt_2029_RC	115	121	158	119	143	98	138	130	113	98
CCTCGCTGGCACCCTT	alt_2029_RC	47	28	44	40	23	32	14	40	21	34
CGGGTGACATCTGATC	alt_2029_RC	1	0	2	6	1	2	3	3	0	1
TCCCCTCACACGTCGA	alt_2029_RC	14	9	16	17	11	24	4	14	18	11
GTTTCTCTCATTCGTG	alt_2029_RC	44	22	37	41	32	41	22	31	29	38
CCTGGTTTGTCTTTGT	alt_2029_RC	72	61	86	85	76	49	69	64	75	67
TGTTGGCCCCCCTGCC	alt_2029_RC	15	9	21	15	4	10	6	13	0	13
GTGCTTTGTACTAAGT	alt_2029_RC	84	56	62	76	68	54	74	72	65	51
AGTATCCAAAACAGCC	alt_2029_RC	21	6	18	19	12	12	9	24	14	19
TCTTGTGGCCCATCTC	alt_2029_RC	17	1	25	15	10	16	7	10	13	16
TGTCGATTATATTCAA	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
CATTTGGTCTGGACCG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
GCATACCTAAGAAGTA	alt_2029_RC	98	82	123	110	83	113	97	104	68	107
GTCCTAATACATCTTT	alt_2029_RC	23	9	24	39	26	24	16	30	17	25
TGTTACTCATTGTATC	alt_2029_RC	133	92	182	176	95	131	100	157	96	142
ACGGCGTTGTATCTTC	alt_2029_RC	40	21	31	33	14	33	17	37	20	33
CATGTGCTTTAAAGTG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
CGGGGGTTTGCGTAAG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TCCAGTCACCGCGGGA	alt_2029_RC	51	21	42	46	20	46	23	39	27	33
AACTCAACGTGACCTG	alt_2029_RC	0	0	0	0	0	0	0	0	0	0
TTGCAAAGCCACCTTG	alt_2029_RC	66	41	71	71	58	61	40	51	55	43
CGGAAGCTGTCACCTC	alt_2029_RC	24	15	29	31	19	20	17	22	12	22
CCGTATAAACCTCTAG	alt_2029_RC	21	16	27	19	19	26	12	29	8	20
CCCGTTGGACTTTTTA	alt_2029_RC	80	59	70	76	47	68	57	52	56	73
GGGTAGGTATACGGGT	alt_2029_RC	29	32	73	53	41	48	32	45	36	46
CGCAGGAGGGACCACA	alt_2029_RC	50	22	63	43	23	41	26	52	37	46
CCCGATCCTATATGAT	alt_2029_RC	13	10	20	14	9	10	7	12	5	8
CCGAACTCTGCCCGTC	alt_3021_missing	12	17	14	4	14	3	14	7	25	5
AAAGGCTTTCTTCGTT	alt_3021_missing	26	69	33	19	48	38	56	33	69	17
ACACATTGTCTGCTCA	alt_3021_missing	9	11	13	4	18	7	11	11	16	9
GATTACATCCGTCGGA	alt_3021_missing	11	17	14	3	24	7	21	5	28	3
CGGAGCAGAAGCAGCT	alt_3021_missing	0	0	0	0	0	0	0	0	0	0
GGCTTTTCACGGTCTG	alt_3021_missing	4	24	16	11	16	15	32	9	14	7
GTGGAGGCTTTATTAT	alt_3021_missing	2	16	5	1	16	4	9	5	10	5
ACATCTGTTGTGCGCC	alt_3021_missing	0	0	0	1	0	0	0	0	0	0
CTTTCCTGCTTAATTC	alt_3021_missing	1	5	4	8	3	6	7	6	6	0
GATTAGGGAACTGGTC	alt_3021_missing	13	34	13	10	32	11	36	11	34	16
GACACTTAGCCATGCG	alt_3021_missing	0	0	0	0	0	0	0	0	0	0
GGCATGTTAAAGGGTA	alt_3021_missing	99	196	118	97	216	94	203	103	241	92
CTATCGTCCCTACCCC	alt_3021_missing	16	22	16	16	38	15	24	15	36	8
ATCGTTTCATAAAAAG	alt_3021_missing	12	28	11	8	34	14	29	18	25	6
ATACAACAACGCAAGC	alt_3021_missing	19	59	28	19	59	13	57	15	66	24
GACACCTTCTAGTTCT	alt_3021_missing	30	68	35	24	54	36	63	24	80	21
ACGCCTTTTGTCTTTG	alt_3021_missing	22	34	33	20	47	21	46	31	47	11
TGGGCACTTTGCGAGC	alt_3021_missing	34	115	65	43	101	38	93	46	121	45
CTCTGTTTCATTACCT	alt_3021_missing	2	11	4	4	10	5	11	1	10	3
CTGGCTTGCGCAAACC	alt_3021_missing	44	89	43	47	80	45	139	43	99	38
ATTACACACGTTTACT	alt_3021_missing	24	71	47	26	58	27	60	24	76	29
TTGTTGCTATATTAGG	alt_3021_missing	40	57	37	29	75	20	49	29	55	25
GTCTACCACGTCGTTA	alt_3021_missing	3	17	6	3	9	2	10	5	11	3
TTTTTCAGCCTTGTGT	alt_3021_missing	8	23	11	9	13	11	16	2	18	7
TTTGCTTATTTGTTTG	alt_3021_missing	0	0	0	0	0	0	0	1	0	0
AGTAATACGTCTGCGG	ref_2515_upstream	44	39	54	61	36	53	45	47	40	41
TGTCTTGCGTTAATAC	ref_2515_upstream	28	22	22	20	21	26	29	14	20	11
ACTGCATTTTGTTTTG	ref_2515_upstream	16	9	11	13	8	15	14	11	14	12
GTGTCCTTTTGCTTTT	ref_2515_upstream	80	63	102	89	59	72	52	75	55	64
TCTACGCACATCTGCA	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCATCTCGTCCGCTCT	ref_2515_upstream	6	1	3	6	1	2	0	3	1	3
CCCATCGCCATATTGC	ref_2515_upstream	60	147	90	93	148	73	153	88	147	59
TGAAATCTCTATCCGT	ref_2515_upstream	171	124	227	191	145	159	138	186	142	104
ATAGAGATAGTTCTGC	ref_2515_upstream	30	8	23	22	15	18	25	13	21	12
TCCCTACTGGCGGAAT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGTGGCGTGCGAT	ref_2515_upstream	7	8	14	13	11	8	11	16	8	11
TCCGCTCGGATTGGTC	ref_2515_upstream	46	28	36	25	45	32	39	32	36	35
AGTTTGTTTGCTGGCA	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTTGTCCGGTGCG	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTGGAAGGGTTTCTTG	ref_2515_upstream	11	9	5	12	15	13	2	8	9	14
AACTATCCTTCTGTAT	ref_2515_upstream	11	13	18	14	9	9	9	15	8	9
TTATGATCCGTCTGTA	alt_2515_upstream	62	52	75	93	56	71	57	79	53	84
TATGACAAGTAATAGA	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCTAATGTGTGTAGAC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTCAATATATTTT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTGCTGGCGTTCA	ref_2515_upstream	33	27	45	41	25	38	30	38	28	31
ATTTACGGTATATAAT	ref_2515_upstream	27	16	26	23	9	33	12	21	19	24
TACTTCCGATTGAGAG	ref_2515_upstream	21	15	25	15	18	19	27	15	17	17
CCAGTAAGCATTACAG	ref_2515_upstream	11	52	13	13	38	8	35	7	37	13
CCTCCCCCTGTCATAC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGTCTAGGTAACC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
GACCCATTTATTGTAG	ref_2515_upstream	328	235	376	336	271	297	253	295	262	296
GTTCCCCTGCAGTCTA	ref_2515_upstream	15	10	19	12	15	13	9	15	17	9
ACTATTCCTTAACGCT	ref_2515_upstream	14	15	25	22	17	17	8	17	13	14
CCTGGAATAGGAAGGT	ref_2515_upstream	3	2	9	3	0	1	1	4	2	9
CCTTGGCTGTCAGGAA	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
ATGATTTGTGCCGCTA	ref_2515_upstream	16	14	13	9	10	22	13	17	23	18
AGGATAACGAATTGTA	ref_2515_upstream	36	33	57	41	41	40	41	50	32	54
CGCACTACTCATTTAA	ref_2515_upstream	23	7	14	22	13	15	6	17	9	7
GGCGTAATAGGTGCAT	alt_2515_upstream	258	182	326	251	190	248	203	208	246	220
GCGTGTGCTTTACGGG	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTACATGTAATAG	ref_2515_upstream	86	51	103	79	60	60	83	63	73	82
GGCGTTCTACTGAGTT	ref_2515_upstream	255	200	234	233	208	242	178	193	187	201
TGCTACACTACATCCT	alt_2515_upstream	34	52	47	45	45	29	45	40	50	41
CCCAAGCGCCTTAGGC	ref_2515_upstream	3	4	6	2	0	3	1	4	2	0
CCGGCCGAGTTGGGTT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCACACGATCGAATGA	ref_2515_upstream	89	83	121	106	67	92	77	108	72	93
CCTTAAGCTTGTGCCT	ref_2515_upstream	43	33	49	24	30	38	46	35	43	35
CTCTGTTGCGGCTGAC	ref_2515_upstream	42	26	51	52	34	28	34	34	45	31
TGGTACTATAATCCAA	ref_2515_upstream	31	26	37	26	31	38	23	33	28	36
CACAGGGCTCGTAAGG	ref_2515_upstream	57	46	54	64	43	57	38	61	43	41
GCCACGCTACCATCTG	ref_2515_upstream	3	6	10	7	4	7	4	0	3	5
GACTTGCGCTAATCCG	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TATACGCGGCTCCCTT	ref_2515_upstream	53	33	53	52	38	38	44	39	42	36
CGTATCTTGTTTTTTT	ref_2515_upstream	91	57	124	108	72	99	68	104	85	103
ACCTGTGTCCGGCAAA	ref_2515_upstream	177	142	230	142	149	186	171	166	175	157
CACAGGGCCTTTACCA	ref_2515_upstream	11	20	31	25	23	12	29	13	29	14
CCTTCTTCATTGGTGT	ref_2515_upstream	20	39	25	15	41	10	29	17	47	15
TGAATAATTGTCCCTA	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTGAACTGGCTTG	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCATGAGCGCCATATA	ref_2515_upstream	129	116	149	123	82	119	113	146	91	122
TGGTGATGATCGTACA	ref_2515_upstream	13	6	18	21	12	15	19	13	11	8
CTGAACTTTACTCTAT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CGGTAGATTATGCCAG	ref_2515_upstream	7	7	12	4	8	5	2	5	7	7
GATACGTTCCTGTGTA	ref_2515_upstream	38	53	41	43	29	57	33	39	40	59
TATTTGTTTATAACGG	ref_2515_upstream	37	42	50	37	32	30	32	34	36	40
TCTTAAAACGCCTGGC	ref_2515_upstream	14	15	32	34	12	15	16	15	15	22
ATGCAGCCTGAGGTGT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
ATATGATCCGTCTGTA	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTCACATGTTTCT	ref_2515_upstream	47	30	49	60	18	30	28	49	24	32
TCCGTATCATGCATAA	ref_2515_upstream	21	14	21	17	16	16	24	13	11	17
TTGTTACGAGTCTGTC	ref_2515_upstream	23	16	35	21	24	18	27	24	26	23
GTGATTCGAGGAAAAA	ref_2515_upstream	56	32	77	43	48	48	47	48	35	38
AGATTGTTTCTATAGT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCTAGGACGTCCA	ref_2515_upstream	10	7	13	6	7	5	7	12	6	7
GCTTGGTTGGCCCTAC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
AACTATTCTGCAGATA	ref_2515_upstream	7	4	13	9	6	13	12	8	5	8
TGGGCATAGATGGCTC	ref_2515_upstream	21	8	34	21	15	27	20	26	22	23
TAAGGGTATGTGAGTA	ref_2515_upstream	21	19	23	22	10	27	16	23	13	20
CTAGATGTCTTCAGTT	ref_2515_upstream	17	12	16	11	5	14	3	9	6	4
AGGAGTGGACTAGAAG	ref_2515_upstream	42	29	52	39	30	42	43	49	38	30
TCTCGACTGCTGTTAT	ref_2515_upstream	57	27	52	38	44	49	42	41	35	57
CGCTGACGCTCTTATT	ref_2515_upstream	8	12	18	19	14	19	17	12	20	5
TAGATCCTAGTTTTGT	ref_2515_upstream	83	44	83	60	51	47	59	68	45	65
GTAACCCTTAAAGTTT	ref_2515_upstream	13	11	20	17	9	15	13	11	22	18
CCTGGTTGTTTAAACT	ref_2515_upstream	74	57	70	52	55	47	65	55	63	34
AAGTTTCGTACTAACG	ref_2515_upstream	27	24	35	42	31	29	30	18	20	22
ACTTGGATAGACTACT	ref_2515_upstream	8	6	3	8	3	6	5	4	0	3
TTCTTTAAACATCGGC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CTAACCTGCATAGTGA	ref_2515_upstream	80	85	118	111	111	70	100	98	86	96
CTGCTGACGCTCACTG	ref_2515_upstream	18	16	25	25	20	16	17	20	25	20
ACTCTCATGTAAGCAT	ref_2515_upstream	12	8	21	14	12	21	10	10	15	15
CACTTTTGGCCTCCCC	ref_2515_upstream	27	13	15	12	14	15	14	24	20	11
TATAGGACTTAATGCG	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTGTTGTGCCGAT	ref_2515_upstream	8	23	11	11	24	6	17	10	34	4
CTGCGGCCCGATTCGT	ref_2515_upstream	250	170	281	235	177	216	146	212	155	212
CGATTCCATAGGGTAC	ref_2515_upstream	37	35	53	38	56	38	49	36	34	52
TGCGTGCCAGTAAAAA	ref_2515_upstream	31	22	60	45	40	43	42	40	27	39
GCTTCTAGTCATTGGT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAGCTTTTCTTAG	ref_2515_upstream	67	53	69	73	49	59	50	60	57	54
CGCTGGGCATTCGACC	ref_2515_upstream	44	43	76	63	48	57	55	62	41	54
TTCAGCTTTGTACGCA	alt_2515_upstream	176	152	208	208	170	174	153	181	176	169
ATAGAACCCTGTTCTA	ref_2515_upstream	41	44	71	67	32	46	46	41	41	47
GGGCTTGTCTTGCCTG	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTTGATACCAGTT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTCAAATACCAC	ref_2515_upstream	17	16	21	23	14	29	16	15	23	21
TGAGCCGTTAATCTAG	ref_2515_upstream	117	59	114	106	55	98	69	80	93	72
GCTTAATTTCCCCGAG	ref_2515_upstream	61	50	78	64	45	52	57	52	52	70
AAGCTCCTTCGTTTAT	ref_2515_upstream	129	102	145	125	90	130	108	135	99	141
AGCTGTCTTATGGATT	ref_2515_upstream	96	76	98	95	64	101	90	74	66	64
GTTCGTGTTTGGATTT	ref_2515_upstream	2	5	3	5	0	3	3	4	7	3
ACTTTTTCTAAAATTC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGTGTTACACGCG	ref_2515_upstream	25	20	40	35	34	28	21	25	26	38
TAGTTGTGTGGCCAAC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTATTCCTCTAATCAT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCTGAAAAAGCCAGGT	ref_2515_upstream	13	14	16	15	11	14	9	13	7	14
GGTCATGCATTAACTT	ref_2515_upstream	69	50	78	69	58	77	51	84	55	53
CCTCATGACTGCCGAT	ref_2515_upstream	17	8	28	17	12	15	11	18	18	15
AACAGATTGCTCTCAT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTGCCCCCCGGG	ref_2515_upstream	36	34	49	52	34	42	27	46	34	38
CCGGACTTTCGGAGAA	ref_2515_upstream	16	19	13	12	20	17	17	21	16	7
ATTTCTCGCAGATCCC	ref_2515_upstream	94	62	108	91	60	82	58	79	87	80
CCATTGTGTATGGACC	ref_2515_upstream	10	19	14	12	16	10	16	13	11	8
ACCCCGCCCTAAAAGT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CTGACTCGTTTTGGTT	ref_2515_upstream	45	32	48	53	42	39	52	41	30	41
CTGCCTTCAAACGCTA	ref_2515_upstream	3	7	6	4	4	7	3	6	5	5
CTTGTCTGCTCACCTA	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
CCATATTCGTATCTAT	alt_2515_upstream	12	13	12	17	9	8	14	8	4	15
ATGTGCACAACAGAAG	ref_2515_upstream	51	32	32	47	32	45	34	41	50	26
TGTGGACTCTGCGACA	ref_2515_upstream	6	5	12	4	3	7	8	7	6	7
CTAATATGTTATTATC	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCGCTTCTCCCAT	ref_2515_upstream	34	24	35	41	19	30	24	35	21	23
TATGTTAAGTGGAGGG	ref_2515_upstream	2	4	5	1	4	5	4	7	5	0
TACATACACTCGCGGT	ref_2515_upstream	0	0	0	0	0	0	0	0	0	0
AGGAAGTACAGTTATC	ref_2515_upstream	17	11	17	16	10	12	15	13	18	17
GTGGTGATTCCATATG	ref_2515_upstream	10	4	7	10	7	13	13	10	10	11
CAGCATGGTGTCCGGT	ref_2515_upstream	51	49	58	40	29	50	31	58	45	58
CATGTGCTTATTCGAC	ref_2515_upstream	69	74	71	60	66	56	70	47	71	48
CGTTTTAGATTAACTC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
GCCCTCGTTGCTAAAT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
AGACGGATTAGGTAGG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
GCTAGTTAAATTGCGG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CTGCCAATCCTAGTTG	ref_6116_new	16	15	21	18	17	13	12	13	24	10
CCCTATACGCGGTCTG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CATGGCCTCACACCAT	ref_6116_new	86	79	102	94	71	89	46	116	41	76
TGCGTACTGTCGGGCC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TATAATCCGTTGGTTA	ref_6116_new	8	9	21	18	21	14	7	15	10	12
CCTTCTGATGGCATAC	ref_6116_new	26	17	50	27	23	25	23	29	25	21
CACCACATTCCGGTAA	ref_6116_new	52	29	70	65	22	61	31	52	43	60
ATCCGATAATCTCCTT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TATCGGATGCCTTACT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
GGTAGCCAGCATTTCC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TTCAATTACATTCCAC	ref_6116_new	53	36	81	52	40	67	46	59	52	43
ATAAGCGAGACGCAGC	ref_6116_new	26	28	35	35	39	31	24	36	18	33
AGCAGATAGTGCAGCG	ref_6116_new	83	54	107	87	63	94	75	109	71	82
TAGTAAAGGTCGGCGC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TTTCATGTTAACATTG	ref_6116_new	38	24	36	38	16	45	26	29	24	23
CGTATAAGGTCAGTCA	ref_6116_new	32	13	39	13	19	28	20	36	28	23
GACTTTGGTGGCAGAT	ref_6116_new	107	55	140	119	95	101	73	135	86	91
TTAAGGTGTCAGATGT	ref_6116_new	8	1	11	2	3	4	7	3	4	6
ATACTATCTGAAGTTG	ref_6116_new	104	60	95	76	72	100	39	64	50	63
TCTTGGCTACGTGTTA	ref_6116_new	13	9	17	16	7	12	13	16	11	17
CAGTTAGGCCTTATAG	ref_6116_new	49	36	80	56	50	56	40	60	36	58
CTCCAAGCATCGCCGT	ref_6116_new	4	6	7	3	7	6	2	8	3	8
TAAGTTTGGATGTTTT	ref_6116_new	65	40	63	54	31	50	23	47	26	56
CGTTTAAGCGAAAAAT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CCGCTGTTGTTTCTCA	ref_6116_new	46	41	87	83	50	78	28	75	50	55
AGATATAGCGTCTAGA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TAGGACCAGGAATGTG	ref_6116_new	11	7	11	18	2	12	8	15	9	19
ATCAGAGCAACTAAAG	ref_6116_new	54	45	67	56	38	42	36	59	49	41
CTAGGATTCATATGCT	ref_6116_new	21	22	28	18	15	19	22	16	12	15
TCCCCGTGCGTTCTTG	ref_6116_new	7	13	9	11	4	9	12	6	10	2
TATCCTTGCGTGGTTG	ref_6116_new	1	1	0	1	1	1	1	2	0	1
CCATGCCAGCAATTGT	ref_6116_new	31	22	25	30	28	25	18	12	32	26
TGCAGATGCAACATCG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
GTCCCTACTCTACGCT	ref_6116_new	4	2	3	4	3	2	6	4	0	2
TTGTCCTAAGTTCTAC	ref_6116_new	30	37	42	50	48	40	48	47	46	41
CTCGGCATAGCGCGTA	ref_6116_new	7	9	13	23	9	6	8	10	9	9
CAACGCTTGGCGTTGC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CCTGTTCAAGCGCGTT	ref_6116_new	6	5	7	19	9	10	7	17	5	8
TTTGAGTGTGGGCTCC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
AATCATAGGGGCGCGC	ref_6116_new	17	6	20	13	3	21	13	17	16	12
ACTCTCACGATAAGTT	ref_6116_new	74	47	73	66	41	61	52	63	46	58
TTCTCTTGCTGAAGAT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TTCAAGCTGAACACGG	ref_6116_new	20	18	24	29	12	28	15	16	16	16
CGCTGATACCGCTTAA	ref_6116_new	103	36	111	79	61	82	56	84	49	73
AGGCTGACCCGGTTGT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CTTAAAGCACCGTTGT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
AAGTTGGCTTTCATTC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TTTCTATCGTCAACGG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TACTCCTGTTTACAGT	ref_6116_new	8	9	12	10	8	11	12	11	10	11
AGATATAGCGATATTT	ref_6116_new	37	27	73	53	35	64	33	53	31	47
TTTTTGTTCCTCTTAG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
GGGTACGCTGGCCTGG	ref_6116_new	31	12	27	19	24	18	15	24	10	21
ATACCGGAATCCTTAA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TAATCTCTCTCCTTCG	ref_6116_new	19	12	24	21	8	16	11	16	14	19
TTTGAAATGCAATGTA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ATGAGGTGTTATGGCA	ref_6116_new	28	25	35	29	26	30	25	37	25	28
TCTTCACGCACAATTA	ref_6116_new	73	44	113	58	39	65	41	66	48	65
GTTAAAAGGCCAAATG	ref_6116_new	62	49	74	56	41	43	45	65	53	61
TTTCTAAGGGTGCGCG	ref_6116_new	55	42	74	47	29	58	36	47	39	43
CGTATGGTAAGTTTGT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TCCTTTTCCATGATTC	ref_6116_new	49	22	65	55	23	39	28	41	32	42
TATTCAGGTCGTAAGC	ref_6116_new	348	187	395	318	169	345	182	298	186	286
GTTAGATATCAGTGTA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TGATCTATGGCTGGAT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TTCTATTTCGGTTTAT	ref_6116_new	38	43	54	48	29	48	30	55	25	37
CGATCTCAGCTATTTG	ref_6116_new	33	22	42	24	27	30	24	24	28	27
TAACAGTCCGACATTC	ref_6116_new	16	15	17	17	18	22	11	14	17	23
AAGTTGGTTGGCCCAG	ref_6116_new	28	11	28	30	13	27	20	24	23	24
GCGGCGTGTTGTGTGA	ref_6116_new	48	29	49	47	51	39	34	44	37	35
TCGGATTGGCCAGTTC	ref_6116_new	70	64	105	102	63	69	69	62	72	73
ACTGATACTATACCGT	ref_6116_new	22	20	21	27	17	21	19	16	25	20
GCTTCGACGATGTAGG	ref_6116_new	19	7	18	17	9	13	13	7	13	8
GGCTACTCATTCTGAA	ref_6116_new	22	16	25	30	14	18	18	24	16	24
GTCTTAGGACAATGTT	ref_6116_new	16	16	19	10	7	15	11	11	10	13
TCTATTCGATTGCGCC	ref_6116_new	39	33	44	41	25	21	24	36	26	27
TGTGGTTGTACGTATC	ref_6116_new	25	8	20	12	16	12	12	20	12	13
TGCACGGTGCTAATTT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TGCGTCTACCTTTTTG	ref_6116_new	31	22	34	45	17	30	27	33	19	29
GTTCTGGGAGAAACCT	ref_6116_new	21	10	28	14	13	16	8	18	15	24
GTGGACGTTTGCGAGT	ref_6116_new	173	113	247	193	147	164	141	163	153	159
ACAACTTTTTTTCCCC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ATTATTTGTTTACTTG	ref_6116_new	35	17	51	33	19	37	19	24	21	28
TATAATTTAATCTGAC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TTTTTTAACTCCGTTC	ref_6116_new	33	31	53	42	25	47	21	30	33	35
TGTATCTCGTGCAACT	ref_6116_new	50	34	80	54	52	62	37	61	60	64
TCGCTTGGTCGACCTT	ref_6116_new	11	10	13	19	23	15	12	8	9	8
TGCACTGTCTATTGAG	ref_6116_new	12	13	15	20	8	12	10	12	17	6
CTCCCATATGATGTTA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CGATAAACGCACACAA	ref_6116_new	31	24	37	29	25	35	19	25	17	33
TCTTGTACCAATGCTC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
AATTAAGCTCTACGCA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
AGACTAACGAGTTTGT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ATCAGTCTTATGATAT	ref_6116_new	100	72	137	114	84	90	102	92	103	97
TCTGACCCCCTTGGTG	ref_6116_new	8	7	10	3	13	5	10	7	18	4
GTCCGAGATGTATTCC	ref_6116_new	45	23	52	35	26	29	22	39	33	33
ATTACCCCCACCCTGA	ref_6116_new	49	22	61	70	40	62	35	54	43	52
TTACCTGAAGTAGTGC	ref_6116_new	9	72	22	17	61	19	89	12	96	21
CTCATCTCCCCACACC	ref_6116_new	48	81	42	53	75	34	103	41	91	38
GCTGTTGTTTTCGAAG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ATTTGTCTTAGCTATC	ref_6116_new	69	48	68	81	44	53	50	45	70	60
GCATAATGGTCTTTGA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
GGAGCTGGTTTTGCTA	ref_6116_new	87	55	77	59	45	79	51	69	44	67
TGACATTGCGAAGCCT	ref_6116_new	122	76	112	91	68	94	77	66	66	71
GTTGGCCGGCAGAGCT	ref_6116_new	220	158	289	243	189	227	164	224	187	195
TTGTCTCACGCGACAT	ref_6116_new	84	35	138	76	54	81	46	74	60	82
GTCGCGCTCTAATTTT	ref_6116_new	14	6	12	8	4	16	6	11	5	18
GCACGGCAACCCGCAC	ref_6116_new	44	35	56	55	33	56	43	42	36	38
GTGCTTTGTGTCGTAT	ref_6116_new	13	10	17	15	7	9	10	5	9	6
TGTACCCGGCATAGGA	ref_6116_new	17	7	19	13	11	14	12	19	10	16
GTCTGCTTGGGTGGCC	ref_6116_new	84	122	99	100	142	90	149	84	175	60
ACACAAGATTACTTAT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TCCATGACAGTGGTTT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ATTCTAATCCGTTCGT	ref_6116_new	38	30	66	44	41	45	22	41	41	47
TGAGCATAGGTTCCTA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TCCGGTATTGTAGACC	ref_6116_new	1	1	2	3	0	1	1	0	1	1
TATTTTGCCTACCGGT	ref_6116_new	25	11	29	30	18	19	14	19	13	17
GTCCATAAGCCTACTC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ATGCCTAAGCATGTCT	ref_6116_new	102	68	87	102	59	87	55	74	67	89
GCTTAATGCATCTCGG	ref_6116_new	31	13	26	28	13	22	15	20	19	20
GTGGATTCGTACAAAA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ACGTCTGTGAATGCTG	ref_6116_new	112	86	109	103	98	109	86	103	112	83
GTTGGCCATATTTCTT	ref_6116_new	152	71	165	162	78	104	97	135	84	141
ACGCTGTGTCTAGATT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TAGGTCCGTCGATTAT	ref_6116_new	35	29	24	35	16	35	29	29	22	24
CAGCCAACCACGGAAA	ref_6116_new	0	0	0	0	0	0	0	0	0	0
ATAGTCCGTCTATTTT	ref_6116_new	42	23	35	34	16	30	26	25	33	41
AACCAACCCACTCCCC	ref_6116_new	1	17	1	7	14	4	11	3	14	1
GTCGTTTGTTATCCAG	ref_6116_new	5	10	14	6	7	6	10	6	10	9
ATGCGGCGTTTTTAGG	ref_6116_new	79	36	81	77	57	54	53	55	51	75
ATGGAGACGTTCGAAT	ref_6116_new	180	82	179	129	105	116	114	125	113	148
CTCGTTCGTCATGGTG	ref_6116_new	22	19	21	28	16	18	20	14	20	15
TCGGGTTACTATGACT	ref_6116_new	51	52	41	45	30	49	38	41	37	48
CGTGTCATTTGTTTCT	ref_6116_new	110	92	149	142	65	99	68	100	71	105
ACGTATGTGAATGCTG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
CGATCCGGCATACGCG	ref_6116_new	10	6	10	9	4	6	6	8	7	8
CAGGTGGACGGTGTTT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TACTCACTCGGCTAGA	ref_6116_new	25	16	32	39	37	26	17	19	13	22
TGATTGCCCCCTGTTC	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TAGGTGCTCCCTTGTA	ref_6116_new	70	42	87	82	56	66	43	74	46	69
TTGCTTGCCGTGACGA	ref_6116_new	128	70	135	105	73	105	83	114	55	89
ACTTGCATCTTTAGTA	ref_6116_new	60	39	87	69	38	48	45	76	42	52
ATGTGACTCATCGTGT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
GGCTCGCCGTTATGAT	ref_6116_new	79	51	105	124	55	73	62	63	63	75
AGGATTTCCTTTCAGC	ref_6116_new	12	12	15	15	16	19	13	10	10	12
GCGTTCCAAAATGCCC	ref_6116_new	23	28	37	42	29	19	16	24	11	21
ATCCTCGTATCTTTTC	ref_6116_new	19	13	24	12	7	13	16	18	8	19
AATACTTCAGCTTACG	ref_6116_new	2	3	3	3	2	3	8	2	0	0
GTAGGATCGAAAATAT	ref_6116_new	19	15	44	28	23	31	25	23	15	23
TTGAGCCCCTGCACCT	ref_6116_new	0	0	0	0	0	0	0	0	0	0
AATTCCCTCGAGTTTG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TACCGAGGTTATTAGA	ref_6116_new	35	22	33	35	24	40	18	36	24	42
ATCTCAGTAAGGATTT	ref_6116_new	52	24	51	37	29	34	43	35	26	30
CTTCCCTCAACATGAT	ref_6116_new	115	81	123	118	75	96	69	84	74	107
ATCAAGCTGAACACGG	ref_6116_new	0	0	0	0	0	0	0	0	0	0
TGTTGGCCACTTGTTA	ref_6116_new	27	21	36	32	18	34	22	23	26	29
CTGGTTGTTAGTAGAC	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
GGAGGCTGGGATTAAT	alt_1612_fdr	146	191	187	162	189	151	172	145	198	136
AGTTCACCTCTCCCGC	alt_1612_fdr	3	11	15	7	11	6	13	7	13	9
CTGCCGGGGATTCTAG	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGCATTCGCTTGT	alt_1612_fdr	45	53	58	50	67	45	60	46	70	41
ATCATGCGCTCAGATT	alt_1612_fdr	8	10	2	4	10	8	9	5	7	5
ACGCTACTCCCCTCGA	alt_1612_fdr	14	69	10	18	79	20	84	10	73	15
CTATCGGTGGGAAGGT	alt_1612_fdr	33	39	37	42	36	28	45	47	52	26
TCCTTGTTTCGTGCTT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TCGATCTTGCAAACTG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TAATACGGGGTTTTCT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TGACAGATAAAACTCT	alt_1612_fdr	9	6	9	6	13	2	10	3	10	8
TGACCTCGACACATCC	alt_1612_fdr	44	64	85	64	76	51	91	44	76	64
ATGTTTCCCCCCTGGT	alt_1612_fdr	76	99	48	45	71	51	99	50	101	49
AGAGCCTATTCTTTTA	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTATATCCTTTGT	alt_1612_fdr	16	26	15	16	17	18	18	13	19	15
TCTTCAGTCGTCCCTT	alt_1612_fdr	60	108	68	69	103	53	103	65	93	35
TCGGAATCAATTCTGG	alt_1612_fdr	28	31	38	36	41	31	40	25	46	29
CTTTGTGGCGTCTTAC	alt_1612_fdr	3	8	7	3	7	5	9	5	10	6
TGAAGCTGTTGGTGAA	ref_1612_fdr	13	11	11	14	13	8	8	8	17	10
CCGATCGCTTTGTGCA	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
AGGAATGAGATATAAT	alt_1612_fdr	13	12	15	5	4	11	12	18	11	15
CCCTTTTTACAGTCCT	alt_1612_fdr	18	21	14	9	40	10	27	17	37	8
GGCTAGCTCCCGTGCT	alt_1612_fdr	44	53	41	45	44	28	46	29	65	31
CAGAGGACACTTACGT	alt_1612_fdr	108	92	115	93	87	95	90	90	92	104
ATGTCGCGCTACATTT	alt_1612_fdr	53	47	40	49	55	33	47	34	44	41
CTACCTGTGTCCAGGT	alt_1612_fdr	5	15	12	7	11	4	15	7	18	6
CGCGACGAGTTGAACG	alt_1612_fdr	39	42	60	49	50	46	44	48	48	34
CTTTTAACATGCTTGT	alt_1612_fdr	53	84	79	55	97	54	90	44	84	79
TCGTGTTATTTGCACT	alt_1612_fdr	39	46	36	36	57	30	54	50	53	31
CGATTCCACATCTACG	alt_1612_fdr	68	63	69	67	75	59	73	58	79	52
CCCTACAATGATATTT	alt_1612_fdr	8	9	7	2	18	6	8	10	5	4
ATGTGGTTTATCGGCG	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCTGGGACTGTTT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TTACTATTACTGCCTG	alt_1612_fdr	14	7	13	18	8	7	13	6	9	6
GCCGGCCACCATTGCA	alt_1612_fdr	4	6	1	4	9	4	10	3	7	5
TTGTGATACGGATAAC	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCACACCAACATG	alt_1612_fdr	214	239	255	230	228	196	253	188	264	219
GATTGATCGCCATAAG	alt_1612_fdr	7	12	5	4	6	1	4	8	9	7
TTGTGGCCTTTGATAG	alt_1612_fdr	4	11	5	4	5	5	10	5	11	6
TTAGGGTCTGTCCAGT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
GATCACAGCCACGCTA	alt_1612_fdr	53	75	68	54	86	55	86	57	72	51
GTCTTAATAGGGCTAC	alt_1612_fdr	48	69	51	35	46	28	71	32	62	35
GCCTTTGGTGTTTCAC	alt_1612_fdr	44	65	59	48	63	43	64	47	46	35
TCGCGCACAAATCGCT	alt_1612_fdr	29	44	39	23	30	30	32	27	45	32
CCGGGAACTTTTTTGG	alt_1612_fdr	146	178	162	157	194	130	175	149	213	128
ACGCTTTAAAGCTCTG	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
ACACTTCGGCTTATTT	alt_1612_fdr	10	1	0	3	7	1	9	5	4	7
AGGCTTGTCCCCATAA	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTGGTGCTGATA	alt_1612_fdr	10	16	10	12	20	12	13	9	13	3
GATGGGTTATCGTCTG	alt_1612_fdr	4	5	3	7	6	6	3	6	4	3
GGGTCTCAGAAATTGG	alt_1612_fdr	11	6	11	10	6	11	12	10	12	8
CTCTTCTGTTGCCGGT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTTTGCGCGGCAT	alt_1612_fdr	12	23	21	18	12	10	18	10	13	15
AATTATACTGTTTGGC	alt_1612_fdr	11	17	15	8	14	9	20	13	19	8
TGCAAGGTTTTCAAGA	alt_1612_fdr	207	213	223	200	256	182	272	192	269	181
TAACTCTCAACGCCCT	ref_1612_fdr	10	21	9	14	29	15	19	9	14	8
CTCTTCACTATTGCCT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTGTTGTAATACC	alt_1612_fdr	11	21	15	22	13	13	21	18	26	15
AATACTATTCTTTACG	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
AGGGATTGCGGTGAGA	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TAGCCATGGAGGATCA	alt_1612_fdr	9	22	24	18	19	13	24	10	14	6
CATAGGGACCTATGGT	alt_1612_fdr	35	66	43	41	51	46	67	29	61	27
ACAAGACAGGCGTTTT	alt_1612_fdr	5	11	5	7	10	6	8	6	15	7
GTTCTATGGTACACAG	alt_1612_fdr	20	29	23	20	30	18	31	20	37	25
TGATCCATCGGGTACC	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGTCGAGGTACCC	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCCGCATCGTCTA	alt_1612_fdr	29	29	32	19	36	18	47	24	34	23
GTGCCTGATAGTAAAG	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTGTAGGGTTGAA	alt_1612_fdr	7	14	15	7	19	8	18	4	13	10
CGCTCCACTCGTCCCT	alt_1612_fdr	19	35	19	25	34	10	26	23	30	18
CTCTCGTATATGCATC	alt_1612_fdr	4	7	1	2	1	1	2	3	2	1
GGTTTCCGACCATGTC	alt_1612_fdr	5	9	1	3	4	8	5	4	8	4
CGCTATGCTACCCCCA	alt_1612_fdr	80	148	97	84	129	95	161	81	131	87
GATCGACGATCTGGGT	alt_1612_fdr	41	48	50	59	56	56	31	47	49	44
GAGGTGCTCACCACGT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTGTTTAGCAAGC	alt_1612_fdr	11	12	9	6	14	17	12	13	19	11
TTCCTTAACGGTAATT	alt_1612_fdr	14	10	13	11	12	17	14	8	8	16
GATCAGGTAGGTCGCC	alt_1612_fdr	38	65	47	65	56	54	69	47	60	42
CAAGGGCTTTCGGGTA	alt_1612_fdr	62	104	85	76	73	63	114	61	84	79
CTGCTGTATATGGGTG	alt_1612_fdr	25	31	28	29	37	22	38	26	29	14
CCGCGGGGTTATTCGG	alt_1612_fdr	3	14	8	11	18	4	16	5	29	1
TCTTCCAAGTATTGCC	alt_1612_fdr	5	24	25	10	12	13	11	7	15	10
ATTATCGGTTTAAGTT	alt_1612_fdr	45	51	41	37	49	37	46	30	54	41
ACTCCGGTTTAAGTCA	alt_1612_fdr	26	36	36	29	30	24	42	19	55	36
CATTAGCGGATGTGCT	alt_1612_fdr	80	122	79	72	117	93	128	68	116	72
TTAGATTGATAAGTAA	alt_1612_fdr	16	21	20	24	32	12	25	12	27	17
TGTTTGTGGGCGGATG	alt_1612_fdr	23	52	42	54	46	33	55	36	52	23
TCGGCATCATGAAATA	alt_1612_fdr	96	91	106	85	84	80	93	64	109	69
AGTCTAGCACAGAGGG	alt_1612_fdr	20	27	38	25	26	12	40	26	32	24
AAAGTCAATGGTTGGG	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTACTTGCATGGT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGTCAGGTACGTT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
AGCATTCGTCTGATTG	alt_1612_fdr	26	31	29	25	44	25	62	32	42	23
CAATTTCCGATCTATT	alt_1612_fdr	0	0	0	0	0	0	0	0	0	0
GCCAACATGTAGTGCG	alt_1612_fdr	23	34	20	19	31	21	18	10	17	10
CTTGTCTAAACGTCTC	alt_1612_fdr	49	61	82	49	82	57	70	40	63	58
CATGCAATTTCGTCCA	ref_1261_RC	0	0	0	0	0	0	0	0	0	0
CGGTACCTTCGTTGCC	ref_1261_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTACGGCCTCGT	ref_1261_RC	72	68	73	82	68	58	59	66	76	65
GCTCAAGGGTTCGCAC	ref_1261_RC	112	115	101	91	98	95	120	78	123	78
TCGAGCGGCATGCAGT	ref_1261_RC	50	51	60	48	56	59	47	55	62	52
CGTGACAGCACTTAAA	ref_1261_RC	0	0	0	0	0	0	0	0	0	0
TTTGAGATTTAGAATC	ref_1261_RC	19	11	21	19	15	12	16	19	15	20
CGCTTTCCGAACCTAT	ref_1261_RC	16	28	27	30	28	21	35	28	35	22
CCCGAATCTTAATTGT	ref_1261_RC	8	16	15	11	27	10	27	14	28	17
CAAGACCTGCATAGCT	ref_1261_RC	0	0	0	0	0	0	0	0	0	0
CTTGGTACACCGTGGG	ref_1261_RC	38	24	27	27	45	19	37	29	29	31
CGGAGTCTAGTGCTCA	ref_1261_RC	2	9	7	5	5	1	15	3	12	3
CCGTGCAATCGGACGT	ref_1261_RC	69	59	77	70	56	64	73	62	58	51
GCTTTGCGTCCGGATG	ref_1261_RC	0	0	0	0	0	0	0	0	0	0
CCCGCTGATTCTGCGC	ref_1261_RC	38	43	30	30	21	27	27	23	28	36
GGGAAGCTTAAAACCG	ref_1261_RC	0	0	0	0	0	0	0	0	0	0
TATTCCGCTTTCTCGA	ref_1261_RC	62	36	72	67	31	66	47	68	47	47
TATGGACATAGCCGCG	ref_1261_RC	2	4	3	7	4	2	10	4	6	1
TTAGCTACGGAAGTTT	ref_1261_RC	5	4	5	1	5	1	4	2	6	11
AATGGGGTCTAGTTGA	ref_1261_RC	24	19	34	21	26	30	25	20	25	31
AAGTGATCTAGAGTAC	ref_1261_RC	0	0	0	0	0	0	0	0	0	0
AAACGCTAATTTAGAC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CCGGGTTGAGTATGCG	ref_919_fdr	4	13	3	1	16	2	19	1	23	3
CCGCGCGGCTGCATCG	ref_919_fdr	56	27	65	61	34	57	35	62	37	73
AGTACTGGAAGGTTAC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTCGCCTTACCAG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CCCCTCTGAAGTATAT	ref_919_fdr	331	245	431	359	270	310	246	309	246	269
GTTTGGTCCTAGCAGA	ref_919_fdr	73	60	95	64	43	69	49	49	53	55
AAGTTCTTAACGAGAA	ref_919_fdr	193	142	244	210	145	190	161	216	162	184
ACTCTAGGGCTGACTA	ref_919_fdr	14	24	22	18	22	11	13	16	14	23
TGGTCATAGGTTACGC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
TGTATGATAATACGCT	ref_919_fdr	156	90	146	124	97	145	115	140	127	111
ACCTCAGGCAGATTGT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
AAAGTCCTTATTTGTT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTTACAGATAGGA	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCCTTACGAACAC	ref_919_fdr	32	23	42	41	21	28	14	20	22	26
TGAAAATCACAGACTA	ref_919_fdr	36	24	40	28	30	33	29	51	21	39
CTGGGCTTTTTGATCC	ref_919_fdr	14	7	17	11	6	18	9	19	8	15
GTCAGCTTCCCCTCTT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTTAGTGCCTTCC	ref_919_fdr	13	16	22	20	15	15	16	13	10	17
GTTTTCGTATTGTATG	ref_919_fdr	33	19	20	21	29	29	20	16	21	18
CAAGGTTATAGATTTC	ref_919_fdr	24	12	14	18	17	22	21	13	8	16
TATATCCGTCCCACTA	ref_919_fdr	29	16	45	30	18	29	17	29	27	22
TTCCGTCTTGTTCCCC	ref_919_fdr	52	57	63	70	50	49	63	51	66	60
TATCCTTCAATTGTAG	ref_919_fdr	38	27	30	48	24	33	22	24	16	32
TTTGCTGGAGCGACCG	ref_919_fdr	60	33	82	57	56	77	51	70	46	61
TCTTTCCGATAACAGG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCTGGATCGCACC	ref_919_fdr	6	9	8	11	9	8	10	9	6	5
AGTGTAAGTCCAGCCG	ref_919_fdr	209	181	267	203	170	183	193	210	181	171
TAGGGGTGCTGGCGCT	ref_919_fdr	60	36	80	59	47	42	40	48	45	41
AGTTTCCAAAGAGTGT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
ACTACATTTCTAGGTC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
AGTATCGGTTGAAGAA	ref_919_fdr	60	33	81	75	55	49	56	88	54	61
GCTTGGGTTATAAATG	ref_919_fdr	89	40	103	85	50	74	80	70	90	73
GGTCCATGCCTTGGTT	ref_919_fdr	116	62	138	123	83	124	84	103	90	92
CGTTTGAGCGGCTGGT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTATTCTTATGGT	ref_919_fdr	25	20	42	31	16	32	24	30	27	28
GACAGCCCCCACTCAT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTAGCGGAACTTT	ref_919_fdr	19	18	25	22	16	20	15	28	21	24
TCGAAGTTAGAAGTAG	ref_919_fdr	2	0	1	2	1	4	3	2	6	0
ACTGGTTCTGTTAAAC	ref_919_fdr	179	153	210	197	142	177	171	155	158	157
CAAGCGGGTTTCCCCG	ref_919_fdr	7	6	9	13	7	11	13	11	16	6
AGCAGGAGTTGCCTGA	ref_919_fdr	44	42	81	47	41	54	38	49	42	45
ACGCTCATGTGTCACC	ref_919_fdr	11	6	5	12	11	5	7	6	14	10
GATCTAGCCAGAAGTG	ref_919_fdr	14	10	13	12	8	7	11	12	7	9
ATGCTACTAACTAGGG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGGCACCAGCGGC	ref_919_fdr	13	5	22	20	14	8	14	13	17	7
TCCGGTCTCATAACTC	ref_919_fdr	18	42	22	20	33	16	43	8	49	12
CTTACTCTTTTGCATG	ref_919_fdr	25	17	30	19	20	19	17	23	21	15
TCAATCGGACTCACCT	ref_919_fdr	25	114	45	44	122	34	133	32	152	28
GAGCACCCCGTGAGCA	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
AATCTGAGCGCCGGGG	ref_919_fdr	93	49	107	84	65	87	52	106	74	73
GTGCTTTTATAAGCGG	ref_919_fdr	20	7	33	20	10	16	14	23	26	19
AGGTAAGAAACAATTG	ref_919_fdr	16	14	13	15	4	16	11	11	10	14
ACCACTTGCTCTGCCA	ref_919_fdr	52	26	62	48	46	38	50	58	47	55
ACTCAGGCTTACCCCG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGCCTTGTACAGG	ref_919_fdr	1	14	5	4	18	7	15	9	6	4
GGACATACTGCACTTT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTCCTCCCCAGAG	ref_919_fdr	94	135	126	106	113	102	130	86	110	78
TAACATTGTTGGGGTT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCAGTCCTACAAT	ref_919_fdr	10	4	7	5	6	2	2	5	4	2
CTCAATTGTTCGTCAG	ref_919_fdr	56	27	53	52	31	47	33	42	43	39
CAGGGTCGCGGGCTGG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
AATGGGCTTCCCACAT	ref_919_fdr	26	14	27	25	18	26	27	22	13	28
GGCGTTGGTATTGCCT	ref_919_fdr	35	16	29	28	14	23	18	35	11	25
TTTTTACATTATATAC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CATAGCTTTGGCAGGG	ref_919_fdr	92	59	79	114	56	75	46	67	55	62
TAGAGGTCAGATTAGT	ref_919_fdr	45	29	47	66	37	34	35	33	45	39
GTGGTACCGATACCCC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGGTACCACGGAC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
TTTCATTGTGCCTGGT	ref_919_fdr	38	32	58	45	28	37	41	44	32	27
GATCGCTTGAGAGCGG	ref_919_fdr	20	14	11	23	7	11	6	22	9	12
GGTCTTGTCGGGCAGG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CATGGGGGTTCGCCGG	ref_919_fdr	127	82	161	116	73	113	61	121	97	93
AAGGAATAGGCATGTT	ref_919_fdr	83	77	124	119	51	98	61	111	80	91
CCATTGGTCTCACATC	ref_919_fdr	143	96	156	146	112	131	122	117	104	137
CTCTAAAGTGTACCTT	ref_919_fdr	4	0	2	2	2	4	1	6	1	2
TCCAGTCTCGTCGGAC	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CCGATGCCCCAGGCTG	ref_919_fdr	40	24	43	42	27	49	33	47	37	30
ACATAGTGCTATTAAG	ref_919_fdr	127	68	155	107	76	107	81	89	81	92
CGTCGGGTCATTGTTT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
TTACCTGGCGGCATTG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CATCTCTTTAACTTGT	ref_919_fdr	34	20	30	22	15	20	21	19	16	19
CTACGCTCATTCGTAG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGTAATATGTTAT	ref_919_fdr	30	24	27	22	17	22	21	33	18	31
TCGCTTGTCTGAGCCA	ref_919_fdr	106	68	115	96	71	96	72	95	67	94
CACCAGGGGTCCGGCG	ref_919_fdr	16	10	17	19	6	12	12	21	12	10
ATGTCCGGTTTTTCAC	ref_919_fdr	47	46	46	45	27	39	38	39	33	40
GCACACTACTACAGTT	ref_919_fdr	29	15	39	18	17	27	17	21	13	31
GAAATCGGATGTCTAG	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCCACTGGCCTC	ref_919_fdr	109	70	135	142	91	97	82	117	101	83
TTTCCATTGCTACTTA	ref_919_fdr	78	49	85	68	56	65	55	69	48	64
CTTATCAAGGAATTTT	ref_919_fdr	57	46	72	81	37	59	46	52	55	42
TTCAGATCTATAGTGT	ref_919_fdr	56	41	79	41	48	44	28	31	35	38
TCCTCGCTGGGTTCAG	ref_919_fdr	17	9	15	16	7	14	9	7	13	15
TCTACGCCACCGCGTG	ref_919_fdr	58	50	74	68	48	62	49	58	78	70
GTGGTTTGTGGGTTAC	ref_919_fdr	15	16	16	25	11	14	21	16	7	10
GTTTCTAAATTGGATG	ref_919_fdr	43	18	44	44	19	25	28	34	28	29
CATAATTGTGTTTTGT	ref_919_fdr	35	38	76	52	39	47	35	49	40	43
TGGGGTCTAACCGAGG	ref_919_fdr	37	14	45	36	11	44	24	29	25	34
GTTCGCTAGAGCGTTC	ref_919_fdr	9	11	11	9	5	2	3	2	5	5
CGGGTATCGTTTTCGG	ref_919_fdr	7	5	6	5	5	10	1	5	8	11
GCTTGCTTGTGCCTAT	ref_919_fdr	18	13	24	25	6	18	19	16	16	28
CCAAACCTAAACTAGG	ref_919_fdr	7	14	11	6	7	17	8	5	7	5
TAACCCCGCCGACGCT	ref_919_fdr	0	0	0	0	0	0	0	0	0	0
TTACGGTCAAGTACCG	ref_919_fdr	115	78	135	127	91	99	104	97	102	115
TCTTCAGTGAAGCACT	ref_919_fdr	4	2	5	3	2	2	5	6	2	3
GCGAAACCGCACAAGC	ref_919_fdr	123	62	119	104	81	132	59	110	74	123
GATCGTGTGCTCTTTC	ref_919_fdr	76	62	119	74	53	74	60	95	63	63
CGGTCTCGTCCCATTG	ref_919_fdr	17	17	57	31	26	34	29	34	20	31
GATTGCTGGATTTTCT	ref_919_fdr	40	52	75	78	25	60	50	63	36	62
TGTTTGCTAACGTTTT	ref_919_fdr	62	36	66	80	42	54	37	62	42	41
GTTTAGTACAGGCCCT	ref_919_fdr	41	15	48	45	15	35	25	31	24	26
GGCCACATCTAACGGG	ref_919_fdr	54	57	86	74	48	72	57	76	54	63
TGTGACCTTCTTTGGG	ref_919_fdr	58	51	74	76	55	46	56	63	40	64
TGAATGCTCCTGTTGT	ref_919_fdr	51	36	41	62	32	48	29	35	43	48
CTAGAAAGGGGTATAT	alt_5993_new	0	0	0	0	0	0	0	0	0	0
GCGGCCTCCATTTTTA	alt_5993_new	239	212	292	245	226	243	253	238	234	220
TTTACGAAGTCCCTTC	alt_5993_new	194	219	218	235	219	176	225	178	182	198
AATCGAGTTGTAAGGA	alt_5993_new	51	52	42	32	37	46	51	40	40	20
AGCGGGTGTATTTCTT	alt_5993_new	31	40	46	68	54	50	47	49	43	36
ATAATTATCAGTAAGT	alt_5993_new	12	14	17	16	7	9	12	4	9	13
TCCAAGAGTCTAATCT	alt_5993_new	11	11	19	11	26	15	20	11	22	25
CTGAGCGTACTAAACA	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TATCAGCTGCATCGTC	alt_5993_new	95	121	111	126	97	91	112	112	120	71
GAAGCGGTTACATCTT	alt_5993_new	100	111	116	100	81	86	102	90	101	103
TACATAATTGTAGGAA	alt_5993_new	40	24	41	40	24	24	42	26	43	26
CAACAGGTTAGCCTAG	alt_5993_new	11	30	25	15	25	11	25	11	15	16
AGGCTCTATGTGTTCG	alt_5993_new	0	0	0	0	0	0	0	0	0	0
AATTTAAGGGCTTCTT	alt_5993_new	18	24	35	24	21	23	18	19	20	17
AAACAGCGGTTTGCTT	alt_5993_new	24	15	31	28	15	20	28	24	24	15
CAGGTATGTCTCACGA	alt_5993_new	28	46	39	35	76	34	65	30	68	28
AGGGCAATGTTCGCTC	alt_5993_new	0	0	0	0	0	0	0	0	0	0
GTTTTAACGGCGGGCC	alt_5993_new	0	0	0	0	0	0	0	0	0	0
GTATCTATCATAATGG	alt_5993_new	4	4	6	4	3	1	3	2	1	0
GCAGCCTCGAGTTTGG	alt_5993_new	3	8	6	4	8	6	9	9	5	3
ACCCCTAGAACTGGGC	alt_5993_new	2	3	2	7	10	2	8	2	9	4
ACTTCCCGCGGGAAGC	alt_5993_new	7	5	9	8	12	7	11	13	16	6
TGTTTTACAGGTTCTT	alt_5993_new	65	64	81	54	56	55	72	58	68	59
CTTGCTCCTGCGGAAC	alt_5993_new	12	8	4	4	4	11	4	2	6	6
TTAGTCCGTAATATTT	alt_5993_new	21	21	27	32	29	18	33	24	13	23
ATATCGCATTTTCCTG	alt_5993_new	36	30	46	35	52	34	45	37	51	30
AAACCAATTCTTTCAT	alt_5993_new	14	11	13	15	13	10	11	9	24	8
CAATCTCCCAGACGTT	alt_5993_new	0	0	0	0	0	0	0	0	0	0
GCTAGTACTGTGTTAT	alt_5993_new	244	266	299	237	309	227	302	255	263	180
TAGCGTTAGTACACTC	alt_5993_new	1	9	3	4	13	2	4	1	8	3
AGGTTTGCAAATGTTA	alt_5993_new	117	128	144	105	115	133	131	95	141	92
GCCATAGCGATCACCA	alt_5993_new	102	72	111	81	80	92	84	106	96	80
TCTTTAAACATTCGAT	alt_5993_new	30	31	49	21	22	39	27	19	25	25
TTATCGACCCGTTTAA	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TTTGCCTTGCATCGCA	alt_5993_new	78	60	66	60	63	73	67	75	76	39
TTTCAACGCCGATGTT	alt_5993_new	0	0	0	0	0	0	0	0	0	0
ATTAGCTTGCAAATCA	alt_5993_new	108	112	121	146	127	114	129	102	148	91
TCGATTTGGCACATTG	ref_5993_new	12	9	17	14	6	17	24	7	19	12
CGGCGCAACTGCTATC	alt_5993_new	6	35	5	7	43	3	33	2	37	7
TTAACTTTGTCAGGCA	alt_5993_new	37	41	46	37	52	46	40	46	33	34
TCATCGGTACGTGATT	alt_5993_new	0	0	0	0	0	0	0	0	0	0
GCGAAGGGCCACTTCA	alt_5993_new	67	69	75	72	77	77	78	56	74	58
AGGTTAAGCAGAGGTT	alt_5993_new	37	38	24	28	28	20	17	34	37	16
TGGAGCTGCGCAAGTA	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TTGCACCTAACTACTT	alt_5993_new	18	34	22	15	31	22	13	22	17	15
TACGTTCAACCTACAC	alt_5993_new	4	3	8	8	9	6	7	5	3	8
CAGGTCGTGTCCAGTA	alt_5993_new	36	50	31	33	28	19	50	25	42	23
CCTCCAGGCGGCCTCA	alt_5993_new	5	2	3	5	3	2	2	2	8	3
CCTCGTCCCCAACCGG	alt_5993_new	17	14	19	14	13	8	24	20	14	10
GAGTCCGTTTCTGAGC	alt_5993_new	0	0	0	0	0	0	0	0	0	0
ACGTTTGAACAGGGCT	alt_5993_new	91	108	104	99	108	103	123	95	108	73
CGTTGTTGAGCACTTA	alt_5993_new	30	41	46	34	39	28	60	36	54	37
ACGAAATGCTCTTGTC	alt_5993_new	39	36	49	48	37	49	28	42	36	43
TTATCCATAGGGCGCA	alt_5993_new	0	3	3	3	5	8	1	2	2	1
CTACATCAACAGATCG	alt_5993_new	14	16	6	11	3	4	9	9	7	4
TGCGTGCTCCGAAGCC	alt_5993_new	0	0	0	0	0	0	0	0	0	0
CTCCATTCTGCTTATG	alt_5993_new	13	8	5	11	10	11	9	3	16	8
TGGTTACATACACTTC	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TTTCTATGAAGTTTAT	alt_5993_new	0	0	0	0	0	0	0	0	0	0
CTCCCCATAGCTGGGC	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TTCAGGCGGGAGTTTT	alt_5993_new	16	25	33	32	34	36	33	31	26	31
TAGTATAGGGGGTGTT	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TCTCGATCGCTCACAT	alt_5993_new	3	5	6	6	4	11	8	2	6	10
AGGAACATCGCGCTTA	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TCTTATATGGGGCTCT	alt_5993_new	52	40	59	41	43	41	43	50	55	34
TTTTGAGCACCTGGCT	alt_5993_new	8	21	16	12	10	20	25	15	28	14
ATCATAGGTAAATGTC	alt_5993_new	0	0	0	0	0	0	0	0	0	0
TTGATCTATTGCGCTG	alt_5993_new	24	37	35	25	27	33	29	25	40	22
GGTGGCCTTAGAATTA	alt_5993_new	20	25	17	29	25	23	31	26	30	34
CGACTCGACCCAGGGT	alt_5993_new	0	0	0	0	0	0	0	0	0	0
CTGAAGCTTTTATCAT	alt_5993_new	7	8	10	10	8	15	21	8	18	13
CGATACAATCTGTACA	alt_5993_new	45	77	46	40	90	25	76	34	67	45
GCGAGGGAGTATTGCG	alt_5993_new	39	44	38	36	34	43	33	33	44	30
CGGATTTTGTATCTAA	alt_5993_new	27	14	19	11	21	24	14	21	32	19
GTTAATTCCCTCTATG	alt_5993_new	12	18	13	12	11	11	10	15	9	8
ACCGCTGTCTTACCCG	alt_5993_new	65	48	66	42	55	45	46	34	60	39
GCGTAGACTGCTGTGC	alt_5993_new	24	20	28	20	35	29	22	20	30	33
GCATGAAGATGACACA	alt_5993_new	0	0	0	0	0	0	0	0	0	0
GGTTCCACAGTAGTAA	alt_5993_new	62	57	55	53	75	36	74	57	75	54
ATTGGGACCAGGCCAT	alt_5993_new	99	103	123	111	117	87	143	105	143	111
GACCGCGTAACTACCC	alt_5993_new	56	106	66	52	99	58	114	36	113	51
CTCACCTCTCCGATTT	alt_5993_new	8	7	17	14	13	16	17	8	23	8
ATGACACGTATTAACG	alt_5993_new	26	26	25	32	27	35	27	21	23	21
GTGGTGCTTGTAAGAA	alt_5993_new	0	0	0	1	0	1	0	0	0	1
AGGCTCTATGAGTTCG	alt_5993_new	125	143	157	161	171	127	184	117	163	111
TTTCGGTGAGACTGGT	alt_5993_new	6	4	12	8	6	9	5	7	3	3
CTGTTATTTGAGGGGC	alt_5993_new	15	15	23	15	14	17	15	8	22	6
ACAGCCTACCCCTAAG	alt_5993_new	0	0	0	0	0	0	0	0	0	0
ACTCCGTCCGACGTGT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TAGCCTTTCCCCTTAC	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCTGCATTCCTGG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TTAATAGGGGGTTATA	ref_1612_fdr	71	63	65	84	61	56	65	52	56	48
CTCTAGGATTACACCC	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TACGCGGTACTTCCTA	ref_1612_fdr	53	49	70	46	41	49	53	34	55	37
GCATACCGTGTGGTTA	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
CACCATCGCTATATTT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
CACCGGCTTGTCCGCC	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
AAACGGGTCTTGACGG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
CACGTATGTTACAATG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTGTGCTGCGTAT	ref_1612_fdr	20	39	36	28	32	25	20	26	29	24
CGCAGGTTGTTTTAGT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TATCGGAACCTCGTTT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
GACCGGCTTGTCCGCC	ref_1612_fdr	69	142	78	52	142	60	132	54	142	46
CCAACAGTCACGCCCT	ref_1612_fdr	24	15	18	17	26	24	27	21	29	17
ACGTGATTATCTGCGT	ref_1612_fdr	79	63	84	69	83	61	66	60	68	58
GAGCAAAACAAGACCT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGCCATACCAACT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TCGATTATGCGTATCA	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAATCATTCTATT	ref_1612_fdr	27	27	28	32	22	22	24	16	30	24
CGCATAAGGTACCGTT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TGACGACTGTCCGCAG	ref_1612_fdr	23	36	34	38	38	29	34	23	42	16
GAGGGATACTAAATCG	ref_1612_fdr	62	64	56	47	53	47	61	44	74	48
TCCGGCTGCCTATCAA	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTTTGCCGCTGAG	ref_1612_fdr	11	24	10	7	17	13	8	7	12	10
TTATTGCGATGTACCG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCATGGACTACA	ref_1612_fdr	70	74	113	73	78	65	83	80	74	63
TAGTCCGTGCGGCAAT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TCACGTGATTAATCGA	ref_1612_fdr	39	37	44	36	25	31	30	29	26	36
TTGGTAAGTCATTAGT	ref_1612_fdr	13	22	12	24	20	23	21	16	22	6
AATTGGGCATCCAGTG	ref_1612_fdr	42	37	55	23	41	31	43	40	38	40
GTTGCACACGCATAAC	ref_1612_fdr	62	53	76	67	51	37	58	54	66	55
TAGATCTCGCGCACAA	ref_1612_fdr	36	49	60	44	43	36	38	41	43	43
GTTTTTTCCCTTGGAT	ref_1612_fdr	298	309	381	353	367	304	390	301	365	259
GTGGGTTTAAATGATG	ref_1612_fdr	40	30	35	39	27	19	22	22	27	31
CACTCCGTCCGACGTG	ref_1612_fdr	40	205	60	50	215	46	233	40	231	46
TGCGCGTAGAGCTGGA	ref_1612_fdr	73	77	101	88	65	108	97	73	77	75
CATCGCTTTGAGCATG	ref_1612_fdr	271	283	334	313	303	286	311	294	346	259
ATGCCGAGTTGTGCCG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
ACTTACGGCCGCAGTA	ref_1612_fdr	56	66	73	62	51	50	77	61	61	42
TACATCCTCTTCTGAC	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
GTTGATAGGGTAAAAT	ref_1612_fdr	34	39	29	35	30	33	34	39	27	33
GCAGCGACGCCCTTAG	ref_1612_fdr	27	37	29	30	28	21	27	18	24	26
TCTTCTTTAAGGTGGT	ref_1612_fdr	0	0	0	0	0	0	3	0	0	0
GCCGTTTTACACTACG	ref_1612_fdr	135	150	162	156	154	116	159	133	151	136
CATACTCTTATGCTCC	ref_1612_fdr	33	45	53	52	43	68	39	55	49	46
TCCACGTTTAAGAGTC	ref_1612_fdr	54	58	60	66	59	45	65	55	79	53
TGGGCCATTAGGCTTG	ref_1612_fdr	13	32	21	21	32	18	13	13	41	17
GGTAACTTGGGTAGTG	ref_1612_fdr	30	46	33	38	52	34	42	38	46	27
ATTGTCCATGATTGGG	ref_1612_fdr	34	27	33	26	39	27	37	41	34	28
AGGCAACCAGGCTCTA	ref_1612_fdr	20	24	32	31	34	23	27	31	44	31
TGGATTCGTCGCTCAC	ref_1612_fdr	17	13	27	17	22	10	14	18	20	15
TATTGGACCTCGTGAT	ref_1612_fdr	49	69	63	54	65	52	61	60	59	41
AGAGATACTGATAACT	ref_1612_fdr	34	30	35	35	40	30	42	29	55	25
CCCGCGGGGCTAGTTG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
GACGTCTCGCCTTGCG	ref_1612_fdr	85	70	122	90	77	87	96	87	87	59
ATTGTGCGGAACATAC	ref_1612_fdr	8	18	10	16	7	6	11	9	15	12
ACGGGCGGATTGTGAT	ref_1612_fdr	127	114	127	136	103	108	137	136	136	116
CTAACGTATGTGAGGG	ref_1612_fdr	48	53	50	51	72	44	48	49	49	38
GGCACGTTTACGTCCG	ref_1612_fdr	63	54	68	65	62	59	65	57	65	58
TGCCCGTTCGCTTGCA	ref_1612_fdr	9	15	11	9	10	7	5	14	14	12
TCTATTTACAGGCGGG	ref_1612_fdr	48	43	55	54	31	40	44	30	51	36
ACTATGCTGGATTGTT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTACTAGACTTC	ref_1612_fdr	10	2	5	4	11	7	4	7	8	7
AGTGGTACCCTTATCA	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
ACCTAGCATCTACTAA	ref_1612_fdr	52	82	62	68	79	50	78	54	60	54
GACTCACGGAAAAAGA	ref_1612_fdr	51	29	37	49	33	57	39	47	42	34
TTCATTCTCTTTCGGC	ref_1612_fdr	54	58	56	48	59	55	37	51	58	44
GGTTATCGAGCATTCT	ref_1612_fdr	42	33	46	45	39	40	46	43	52	38
AGGGTTGTAAACATCG	ref_1612_fdr	88	88	117	96	93	121	95	91	105	80
CACCGTGTATCCGATC	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
GCAATAACGCAGGGTG	ref_1612_fdr	45	49	79	51	47	55	54	51	51	61
ACCTCCAAGGGTGAAG	ref_1612_fdr	76	64	100	90	76	81	67	99	94	69
CTATCGCTCCTGTGAT	ref_1612_fdr	16	20	9	9	13	13	37	14	15	10
AAATGAGGTATCGAGC	ref_1612_fdr	6	14	11	12	11	11	8	8	17	8
TTATTGGCTTATTTGT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
CGGATGGTGGTTCTGG	ref_1612_fdr	61	48	84	60	53	64	49	67	41	65
CAGTAGCTATGCTAAG	ref_1612_fdr	125	129	134	140	114	121	156	122	148	104
TCATGGAGACGCTTCC	ref_1612_fdr	13	9	12	20	5	9	12	8	15	8
CTGTCTTTTTATCGTT	ref_1612_fdr	28	16	29	28	15	25	18	26	16	18
ACCGTATGTTAACTTA	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TAATCGCCTCAGAAAT	ref_1612_fdr	75	83	84	79	85	63	76	70	79	59
CGTCTCACGTCCCTTC	ref_1612_fdr	17	17	20	32	17	17	31	15	23	23
TGCGCGTGGTTCCTAT	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCTATCAAACAAG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
AGGGTAAAGGTTCTGA	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCACAGTTCATTC	ref_1612_fdr	73	81	99	100	62	82	74	83	87	63
GCGGCGTTACCGCAAG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
ACATTTTTCTCGCCAC	ref_1612_fdr	53	47	77	55	65	49	37	58	52	48
ATGCAAGCCGTAGTCA	ref_1612_fdr	28	23	26	27	23	27	28	21	35	26
CCTGACACTTCGCCGT	ref_1612_fdr	3	2	2	4	3	1	4	4	6	6
CCTAGGATTTCCTAGA	ref_1612_fdr	14	6	14	5	6	3	7	4	16	6
TCGCATTAATCTGGCT	ref_1612_fdr	2	7	1	2	3	2	0	3	0	2
TGAGCCGGGGGGTTCT	ref_1612_fdr	76	89	99	95	84	81	89	64	96	73
CAGGGGGTAACTTTTC	ref_1612_fdr	31	23	43	43	25	42	53	31	25	33
ATTACCCCCTAGTCTA	ref_1612_fdr	55	56	66	79	67	69	70	71	63	63
CACTCCAGTTTCACCT	ref_1612_fdr	9	15	7	7	19	9	14	11	11	10
GAGCTGGTGTAGTCAT	ref_1612_fdr	57	54	53	64	43	60	58	55	58	47
GTCTTCTAATCTGGGC	ref_1612_fdr	15	47	24	19	28	10	38	16	42	13
TCACACGCGAATAACT	ref_1612_fdr	87	122	123	87	127	114	160	117	186	84
CGCTTTCTGGCTCATT	ref_1612_fdr	16	11	16	22	16	12	21	14	23	14
TTAGTACATTACCCCT	ref_1612_fdr	3	8	2	0	13	1	13	2	12	5
ATTGATTGGTTTTGCA	ref_1612_fdr	16	19	15	14	14	14	16	16	13	19
TGTCGAACTGTGATAG	ref_1612_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCTAGGTTGAATT	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
AATTCCACACGCCAGC	ref_2534_upstream	95	107	135	93	121	93	85	126	112	101
ACGTGGCACCTCTCCG	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
GATGCTGCTACGCTTC	ref_2534_upstream	52	37	64	54	52	66	56	56	59	44
CGCGACTAAAACGTTT	ref_2534_upstream	2	0	2	0	0	0	0	3	1	1
TCCGGTTACCCAATGT	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGGCGCATTTACAGAC	ref_2534_upstream	25	21	39	26	20	21	25	18	40	22
ACAGTTCTTTTGGCCC	ref_2534_upstream	64	68	94	65	68	76	65	52	66	49
TCATCTACCACTTTTT	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
TTATGTTACAGAGCCT	ref_2534_upstream	43	54	55	47	49	40	54	39	55	34
CCTGCGAACATTATTC	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
CACGAAGCTGAATTCT	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
CCTCATAGCTATTAAC	ref_2534_upstream	28	23	47	33	27	33	20	20	31	22
TGTTGTATGTTGAGGA	ref_2534_upstream	162	137	189	167	136	147	145	138	138	131
TTGCGACTATGGCACT	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
ATAAGTAAGGCTTTGC	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGATCCGACTGCCCCT	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGACATCTCCGGTAAT	ref_2534_upstream	15	13	29	16	14	12	12	11	8	9
GGATAGCAATCTTTCG	ref_2534_upstream	16	13	15	11	17	19	17	24	23	13
AACTCCCTTTCACGGA	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATGTAGTAACGC	ref_2534_upstream	37	34	42	24	39	33	48	30	45	28
CAGCTTAGTAAAGTTT	ref_2534_upstream	11	11	9	15	14	8	15	8	11	12
CCCCTGTGTCTTGTAG	ref_2534_upstream	2	1	1	1	3	0	5	3	6	2
CTTCGGCGTTTTCGAT	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
CTATCAGTAGTCAGAG	ref_2534_upstream	36	28	37	35	42	39	46	44	47	34
CACGACCCTCTGTTGC	ref_2534_upstream	9	7	11	10	22	11	22	11	24	7
CAAACCAACCTAACGC	ref_2534_upstream	7	5	3	7	11	5	5	5	3	4
GGGCTTAAGTTGGCGT	ref_2534_upstream	22	15	27	25	13	19	15	15	15	19
TGTTTTCACTCAATTT	ref_2534_upstream	34	36	46	44	31	43	40	35	38	28
CGTTTTTTTAAATATA	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGAGGAGTAACGA	alt_2534_upstream	4	7	4	4	9	8	6	3	4	7
CACACATACGCCTGAA	ref_2534_upstream	47	51	46	53	38	34	62	36	57	35
CTGGGCGTACGTCGTC	ref_2534_upstream	40	32	35	35	43	31	32	34	39	33
AGACATTGCCCGGTTC	ref_2534_upstream	9	10	12	11	8	14	8	14	13	4
TGGTGCTTTGCTAGCC	ref_2534_upstream	107	96	116	119	75	112	99	99	96	75
GGTGTGTCTTTCATCA	ref_2534_upstream	3	3	5	2	4	0	7	3	10	5
GCTGTACTCTCCGCGC	ref_2534_upstream	2	1	4	4	2	5	3	3	5	2
GCTGCTTCCCCCGCTA	ref_2534_upstream	42	30	46	37	30	37	36	27	38	41
TCTCTGAAAGTGAAAA	ref_2534_upstream	38	36	25	36	25	24	29	24	33	24
GCTCTCTAGTTATTCG	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGCATCGGTTAGC	ref_2534_upstream	47	64	68	62	57	65	67	75	60	49
GTGATGAATGGCGCAA	ref_2534_upstream	112	77	123	93	80	106	76	95	99	103
GTCAAGGTATTAGTAT	ref_2534_upstream	11	12	8	9	18	5	11	10	13	10
GTTTGTTGATTGGTTG	ref_2534_upstream	53	52	54	42	62	48	48	34	48	47
TTTTCTGATCGCTGTA	ref_2534_upstream	33	36	33	20	30	26	23	34	27	21
ATATACACGTTGTCCT	ref_2534_upstream	10	17	29	14	16	15	9	16	24	23
CCTCGATAGCTCTTTG	ref_2534_upstream	15	13	19	21	20	15	18	16	17	10
ACTTTTCGAGTTTCAG	ref_2534_upstream	145	129	170	131	119	163	145	129	163	127
CATGAAGTTTCGCCAT	ref_2534_upstream	2	3	10	7	2	3	2	5	0	3
GGTCCACGCTGCCCTC	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
CTAATCGGTCCAGGCG	ref_2534_upstream	61	50	69	50	60	46	62	49	63	52
TGCCCGGCGTAGGGTG	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGCATCCCAAGGT	ref_2534_upstream	13	11	29	25	9	13	12	29	20	20
GCACCTTGCAATCAGC	ref_2534_upstream	0	0	3	0	0	0	0	0	0	0
TAGACAAATTTGCCAT	ref_2534_upstream	53	52	48	54	42	53	62	35	55	42
TCCGAGTGGGGCCCCA	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGTGCTGGGTTGG	ref_2534_upstream	26	34	30	38	27	23	28	32	39	25
ATTTTTCTGAGCCAAT	ref_2534_upstream	36	45	57	59	41	39	29	50	38	50
AGGTTTAGGCCGGGTG	ref_2534_upstream	102	79	106	76	109	75	96	95	79	88
CTACCATCCCTCTTCT	ref_2534_upstream	38	29	38	45	24	39	26	31	33	41
GTGGTTGACTTAGGGG	ref_2534_upstream	56	50	60	72	57	51	51	43	62	41
CTTAGGATGGCGACTG	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCGTCTACACTT	ref_2534_upstream	0	0	1	0	2	0	0	0	0	0
GTGCATTTACTAACAT	ref_2534_upstream	40	36	44	37	40	32	26	27	56	35
AGCCTGTAGTCAAGAC	ref_2534_upstream	55	63	77	53	76	45	67	44	62	38
CATAATATTTTCGCCT	ref_2534_upstream	10	19	23	18	15	17	15	14	9	8
ACATTTAGATTTTGTA	ref_2534_upstream	62	62	86	62	69	66	67	66	96	51
ATTTTGACATGTTTGT	ref_2534_upstream	4	9	9	11	11	6	5	7	3	9
GGGTCCATATGCCACA	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGTAATCCTCGTCATA	ref_2534_upstream	72	64	85	64	52	59	70	77	54	65
AGCAAGCCCCTGACTC	ref_2534_upstream	68	81	102	86	90	67	65	76	94	69
TCATTTTGTTGATTTA	ref_2534_upstream	41	32	56	57	48	52	44	41	28	54
GGTCGTCACTCGAACA	ref_2534_upstream	30	50	39	31	41	20	31	40	48	20
TTGTGCATCGCCCTTC	ref_2534_upstream	44	26	52	45	21	37	26	40	40	34
GTTTAATGCTAATAAA	ref_2534_upstream	84	53	93	82	72	67	77	65	69	51
TGGATAAATTCTCGGG	ref_2534_upstream	8	9	15	6	13	9	9	9	11	5
CAAAGCAAGCTCTGCT	alt_2534_upstream	179	162	192	170	160	153	160	164	174	138
GCAATCCAGGTTTCGG	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
TTGGATCGCATATCCC	ref_2534_upstream	99	84	142	93	81	106	86	89	108	74
TTTTAATGGCCATTTT	ref_2534_upstream	132	118	128	97	89	141	98	93	109	83
GGAGGAATTTAATATG	ref_2534_upstream	24	33	36	18	30	35	25	30	25	23
GCAGGTACAGATCGGC	ref_2534_upstream	68	81	71	55	91	72	80	61	77	54
CGACTAATCAGTCGGA	ref_2534_upstream	18	24	27	14	18	31	24	19	20	20
TTTTACTTGTACGTCG	ref_2534_upstream	8	10	24	11	13	6	8	13	12	14
AGTTTATGTAGGGCAG	ref_2534_upstream	0	0	0	0	0	0	0	0	0	0
ACAACATCGGCCAACT	alt_3933_fdr	109	129	166	111	136	128	150	114	158	115
CAGTCAAGTCCATTAC	alt_3933_fdr	12	13	9	6	15	5	11	5	17	6
CGACCTCAACGGGTCC	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TCACTACCCTACTTTC	alt_3933_fdr	7	27	2	8	27	4	19	4	26	2
TCACCCCCGGCGCTCT	alt_3933_fdr	2	5	7	0	6	5	6	1	5	8
GGAGCCATTAGTCATG	alt_3933_fdr	164	189	221	149	208	178	225	157	219	111
CTATTGCGCTAGGACC	alt_3933_fdr	15	35	12	15	16	11	30	18	29	12
CACTGATTTCTCCCTT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TATAGACATCTTTTCC	alt_3933_fdr	27	30	20	27	15	17	32	18	34	20
TTGTAGCAATGGTCCA	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTTCTTGTGACA	alt_3933_fdr	138	144	145	119	153	127	192	134	191	107
ACGGCATGGGGGTGAT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
CTTTATAACGTTTCCT	alt_3933_fdr	14	24	16	15	13	21	20	13	26	21
CACTCGCAAGTTTCTT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GATCCAGAGGTTTGTA	alt_3933_fdr	6	22	16	12	11	13	11	13	12	17
TCCCTAAACCTAAGTT	alt_3933_fdr	18	35	14	11	30	22	15	16	28	8
TTTCTAGGACCTACAG	alt_3933_fdr	8	7	15	8	13	7	11	18	11	8
TTCCTGAGATTGCGCA	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGATGCTTTGTAT	alt_3933_fdr	3	5	3	1	3	2	3	1	1	2
CGTTGTGCCGGTAGGA	alt_3933_fdr	4	4	7	4	7	6	10	13	10	6
TGCCTGGCTCAAATGT	alt_3933_fdr	30	22	27	28	36	29	30	29	28	19
CACTCACCCCCTACTT	alt_3933_fdr	6	27	15	11	14	7	16	7	17	8
TTTAACTCGGAAATTA	alt_3933_fdr	29	27	34	26	54	32	49	22	39	19
TTTTAAGTTCTCCTTG	alt_3933_fdr	23	18	22	16	31	23	17	21	34	28
GCACGGTAAGGTGGAT	alt_3933_fdr	8	9	7	15	5	8	11	4	4	9
GGTCGTCTTCAGAGGC	alt_3933_fdr	32	39	51	39	58	39	44	41	53	41
CTCGACAGGCAAACGA	alt_3933_fdr	15	20	21	20	16	14	24	17	16	14
GTACTATCCACTTGGC	alt_3933_fdr	77	104	85	63	100	68	92	61	103	56
CTACTGGAACATGTAT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGAGCCGTATGGC	alt_3933_fdr	53	110	66	51	96	63	102	51	110	58
AGACTGGGGAGATCTT	alt_3933_fdr	17	14	21	9	15	15	12	6	16	15
TAGGCCGTATCTGTAT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GCATTACGGAGGTATT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTATTAACAAAAT	alt_3933_fdr	2	3	3	3	5	4	8	2	9	3
TTGGTTAAAGTCCGGA	alt_3933_fdr	38	46	44	31	42	27	46	23	56	29
CTTTATGTTGTGTTCA	alt_3933_fdr	49	89	39	39	55	37	59	41	67	30
GCTACGGGTCTGCCTC	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAATCTGACCGGT	alt_3933_fdr	123	144	174	120	136	103	132	125	150	115
TACTTACGCTCAACCT	alt_3933_fdr	5	13	6	2	8	1	8	1	5	3
ACGCTTCTAGTACTTG	alt_3933_fdr	8	5	7	7	5	3	8	3	6	4
AGATTTATCGGCCACC	alt_3933_fdr	217	204	227	199	249	170	244	192	264	188
TATACAAACTCTGCTC	alt_3933_fdr	14	19	9	19	27	11	21	9	18	19
CTGGTCCGGCCTCTCG	alt_3933_fdr	28	30	26	15	42	18	27	8	28	15
GACTGGCATGAATGCG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GAGGTTTTATACATTT	alt_3933_fdr	62	77	84	69	68	61	98	71	101	64
TTGGAGAATTCGTTCT	alt_3933_fdr	33	35	43	33	32	31	45	26	47	26
GGTCTAGAACAGTTGA	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TACTTAGACTCTTCCG	alt_3933_fdr	1	1	3	1	1	0	3	1	0	3
GCATACCCTGTGTTAA	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCAATGACGTTGT	alt_3933_fdr	14	16	16	14	22	19	22	21	17	14
CAACCGCGTCGGCACG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCTAACACATGGT	alt_3933_fdr	61	58	67	57	51	58	47	52	49	57
CAGTACGTCATCTTGG	alt_3933_fdr	69	95	101	66	95	74	117	68	103	77
TGCGATCCGTTGGTCT	alt_3933_fdr	9	13	5	9	9	5	9	12	10	4
GGCACGCCTTCAATGT	alt_3933_fdr	24	34	28	21	31	14	34	32	31	21
AGAATTGAAATCTCAT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TCCTAAGAGACCCACG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GGTAAGGGTAATACAG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
CAGCGAGCCACCTGCT	alt_3933_fdr	52	81	64	51	79	48	76	37	74	57
TGGCTGGCTGCTGGCC	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGTCGTTGAGTGC	alt_3933_fdr	13	23	21	11	17	14	13	16	20	18
ATTTTGAGCTTACTAT	alt_3933_fdr	2	0	6	0	3	3	2	2	5	4
CCAGTAAGTAAGTAAA	alt_3933_fdr	4	21	6	2	19	0	21	3	22	6
GTTAACGTTCTGGCTC	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GCACGTACCTTGTCTT	alt_3933_fdr	16	36	13	15	25	20	35	17	33	12
TAAAATTCCATCTCCC	alt_3933_fdr	44	54	38	43	60	38	68	25	42	31
ATGCCTTTTATCGTCG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GATGGAAGCGGTATCG	alt_3933_fdr	6	6	4	2	0	2	3	0	0	2
TGTGGCTACCCAAGCA	alt_3933_fdr	19	19	7	13	16	18	18	6	20	11
GCGCCGATTACGTTGT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TACGTGTCTAGAACAG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
CGTATAAGGTGTTCGA	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCGCTCCTTTTCG	alt_3933_fdr	26	42	34	18	51	21	33	26	40	29
AATCTAACAGTCTGAG	alt_3933_fdr	30	50	42	19	54	38	57	18	61	34
GTGTCTGTTGGGCCTG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCTCGCATGACAA	alt_3933_fdr	18	26	26	15	25	19	32	16	32	11
TCCTCGTCAACTTGTT	alt_3933_fdr	3	19	3	4	18	4	16	0	19	2
CGTCTCTATTTGTCTA	alt_3933_fdr	1	9	9	4	4	4	5	11	7	4
CTTTCCGTGGGGGAAT	alt_3933_fdr	15	26	19	14	27	15	23	16	28	15
AGGGCCGCCCTGGTGC	alt_3933_fdr	40	47	47	24	38	22	32	33	36	38
CATGAAAGCTGTACAG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GTTACGGAATGAGCAT	alt_3933_fdr	20	17	34	17	27	14	23	23	22	10
GCCCGGGGTATGTAGG	alt_3933_fdr	20	20	34	18	28	20	34	20	37	17
ACTGTTCACTCGAGTC	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
CATAGGTGAGGTCTAA	alt_3933_fdr	17	21	24	15	24	20	26	12	20	9
CCACACTGGGTACATT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
GATTGGATGGTTCTTT	alt_3933_fdr	5	17	8	13	11	8	11	5	12	9
CGATACTCCACCAGGT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
CATCCTGAGTGTTGAC	alt_3933_fdr	6	9	19	5	12	3	15	3	3	9
AACAGCATACATATTG	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGGAACCATACGT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TGACAGGTCTTTATGA	alt_3933_fdr	72	99	93	63	85	84	104	60	106	77
ATCTTTATATTATATT	alt_3933_fdr	57	68	66	68	68	45	63	40	87	47
CCTTACGTGCCATAAG	alt_3933_fdr	40	51	29	30	40	24	35	20	46	24
TCTCATCTGTAAGCGA	alt_3933_fdr	2	9	3	8	2	4	3	4	11	5
GCTGTGGCCAAGCTTT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
TTAATTTAAGCAAGGT	alt_3933_fdr	149	154	210	134	152	155	204	133	198	131
CTATTTCGCGTCGTAT	alt_3933_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCTAGGTATTCGC	alt_3933_fdr	18	20	34	11	28	8	32	20	22	10
CTGTCCTCACGTGAGA	ref_5886_new	59	82	58	42	80	38	115	42	109	52
CTCTGATGTTAGATGA	ref_5886_new	41	82	36	34	103	31	87	47	92	28
TAATGGCGTAGTCACG	ref_5886_new	4	9	9	7	28	4	23	6	14	5
TTGATAGACATGTGAT	ref_5886_new	27	67	31	19	65	17	75	27	67	22
TCTGTTCGCGGATTTT	ref_5886_new	28	59	42	26	51	16	45	28	70	31
ACTCGAATCATTGGGA	ref_5886_new	84	191	113	103	191	83	170	75	194	86
ATAGTTGCTTCACATG	ref_5886_new	37	44	38	30	60	33	49	44	73	28
ATTTACGCATTGCTAG	ref_5886_new	1	3	2	5	3	3	2	0	5	1
TAGCTTTCTGGTCACT	ref_5886_new	28	43	30	36	59	25	67	23	54	19
CATTTAAGCTTGGATT	ref_5886_new	0	0	0	0	0	0	0	0	0	0
CCGTAGACGGATCCGA	ref_5886_new	90	197	91	113	183	105	204	107	146	82
ATCTCCCGCCTGACGC	ref_5886_new	0	0	0	0	0	0	0	0	0	0
CCTACATTTTGGACAC	ref_5886_new	108	266	151	152	270	115	253	126	295	119
TATATGATTGTGACGT	ref_5886_new	0	0	0	0	0	0	0	0	0	0
CGTTGGGTGTAACCGA	ref_5886_new	22	49	25	20	60	21	57	16	45	15
TCGTATGGCATCAGCT	ref_5886_new	0	0	0	0	0	0	0	0	0	0
CTGATCCTACCCCTGT	ref_5886_new	10	33	13	21	44	21	38	12	32	11
CACTCGAAATGCAGTT	ref_5886_new	7	15	12	5	24	0	18	8	20	12
GTCAGTTCATGACGAT	ref_5886_new	10	15	8	7	16	9	18	12	12	11
CTCGCTCTCGGGTTGC	ref_5886_new	5	26	11	16	26	3	19	7	20	7
TCGATCCCTGAAAGAC	ref_5886_new	23	28	14	22	24	11	17	13	33	15
CCGTCCCTTTTTTTCG	ref_5886_new	6	20	9	10	14	10	22	12	28	9
CTGTCCCATGTTTCTC	ref_5886_new	0	0	0	0	0	0	0	0	0	0
TTGAGTCCCTTCCAGT	ref_5886_new	2	12	14	9	33	13	27	9	31	9
GCCATATTGTGTGTCC	ref_5886_new	10	18	5	9	18	7	23	8	9	9
GGGGGCTGAAACCTAA	ref_5886_new	76	120	82	63	119	57	116	67	133	56
TTTCATTTGGTTTGCC	ref_5886_new	57	134	71	69	108	54	112	48	116	50
CCAGATCAGCAGTTGT	ref_5886_new	0	0	0	0	0	0	0	0	0	0
ACCCTGCTGCGGCGAA	ref_5886_new	0	0	0	0	0	0	0	0	0	0
TCGTCCTCCGCTTCTT	ref_5886_new	22	29	17	21	26	18	43	24	19	9
CTCGCTCCGATTAGCT	ref_5886_new	119	298	147	119	247	122	277	117	261	117
GAGATAGAGGCTTTGC	ref_5886_new	6	10	2	4	9	2	4	3	4	1
TTTAATCATCTCTCGG	ref_5886_new	5	12	6	5	12	11	20	15	21	11
GGGAGTAGATCTACTA	ref_5886_new	0	0	0	0	0	0	0	0	0	0
CCATCGGGTTTGGCCA	ref_5886_new	0	0	0	0	0	0	0	0	0	0
CGACGTGATCCGTCAG	ref_5886_new	38	72	38	28	73	24	81	36	83	37
TAGTCTGGTCGTCACC	ref_5886_new	8	26	7	8	21	11	20	9	19	7
CTTACGGGCCCGATTG	ref_5886_new	2	5	5	2	7	4	11	3	8	3
CCGCGAGGAGCCTGGG	ref_5886_new	65	130	86	84	150	73	130	71	153	72
TAGATCCTGGCATCTT	ref_5886_new	11	22	8	8	11	11	23	6	17	1
GTATTGGTCTCTCCGG	ref_5886_new	82	165	100	80	166	80	190	82	169	81
GTTCTCGCCTGCATCA	ref_5886_new	16	16	9	10	25	5	23	7	25	6
ACGCATTGTCCGTATG	ref_1762_RC	61	71	80	72	79	74	87	54	79	64
ACGAGTATAAGAACCG	ref_1762_RC	30	43	52	40	40	33	41	33	45	24
GAATTGTAATGATCAT	ref_1762_RC	10	5	9	7	15	11	9	8	7	8
CTGCTAGGCCACCCTG	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
GCCTAAACGTGCCTCC	ref_1762_RC	52	80	59	45	70	32	71	37	77	47
CGTAGAAACCGCGGCG	ref_1762_RC	61	57	67	83	60	66	81	64	91	57
CTTCGTAGACTGAGTA	ref_1762_RC	130	124	171	131	146	127	154	120	141	117
TGCGGTTACAGGAAGG	ref_1762_RC	14	15	19	13	17	8	20	12	17	16
CTTATCCCGTTTTTAT	ref_1762_RC	20	25	19	19	26	17	12	18	17	19
CTAACCAGTACTCTAT	ref_1762_RC	61	71	56	63	61	60	66	50	53	66
GGTGCATTAGTTAGAA	ref_1762_RC	7	4	18	10	7	5	6	3	10	9
CATTTACCCTGGGTTT	ref_1762_RC	3	6	11	5	4	8	12	7	8	7
TATCTAGGCCGTTTCG	ref_1762_RC	15	12	23	25	15	19	15	19	24	16
TTTTGATTGTAAGGCT	ref_1762_RC	22	24	19	22	24	23	22	20	21	20
TTATACACCCTTTCCT	ref_1762_RC	88	76	101	79	81	65	92	45	83	57
TTAACTGTCAAAATCT	ref_1762_RC	97	86	120	94	79	69	92	98	82	77
TTGCAGTGGCCGTCTC	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
CGGGTCAGGGCTCTGT	alt_1762_RC	13	23	17	12	14	12	21	21	15	9
CCAGTCAGTAAGGTGC	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TACATCTGGTCATTTA	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TTTCGTCGGGATCTGG	ref_1762_RC	9	5	8	9	5	8	3	5	6	7
TACAGCAACCGAACTA	ref_1762_RC	117	120	131	114	113	106	99	83	98	89
GTGTGAGCAGCGCTCT	ref_1762_RC	26	25	35	29	24	34	39	11	39	21
ACTCAATTCTTAAGGT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TCCACTTGTGGCCGCT	ref_1762_RC	8	16	14	9	13	11	21	11	34	15
CTGCAGAAGTCAATCA	ref_1762_RC	24	22	26	24	31	21	26	23	29	18
AAACAACGTTTTCAGC	ref_1762_RC	79	81	88	94	75	75	77	72	88	87
AGTACTGACTTGACTA	ref_1762_RC	40	37	55	37	71	55	54	42	48	35
TTCGCTCACTGCATCA	ref_1762_RC	12	5	18	12	19	6	3	13	7	11
ATGGCGTATCCCGTTA	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
CAGTTTTCAATCGCGA	ref_1762_RC	17	14	18	21	24	23	20	16	14	16
TCTCCCCGCGGTTGGT	ref_1762_RC	2	24	1	3	26	0	21	1	31	0
ATTCCGGGTACTACAA	ref_1762_RC	30	11	27	23	22	17	13	11	21	10
TCTAATTACCTCCTTC	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
GTCCGGGTATTTTCCT	ref_1762_RC	8	6	9	10	7	7	4	1	11	12
GCTCCGAAACTGTACA	ref_1762_RC	38	45	60	57	49	39	42	37	43	45
TGGTTAGTCCCTGAGG	ref_1762_RC	188	177	220	215	193	172	197	140	176	165
ATTTCCTTCTTTCCAG	ref_1762_RC	20	32	42	21	32	33	32	22	36	39
GGTCAAGTCTATAGGC	ref_1762_RC	76	93	90	73	78	63	91	76	72	73
TACTATTTTGCCTCTG	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TGTGTGTCCAATGCTT	ref_1762_RC	29	29	43	29	36	25	25	38	47	19
GAGTTTCATGGTCCCC	ref_1762_RC	22	27	30	23	21	14	24	28	22	20
CAGGTTCTCTAGCTAT	ref_1762_RC	3	3	6	4	1	3	3	3	1	1
CTCGTAGAGCGTGTGT	ref_1762_RC	4	9	10	6	6	5	6	11	13	11
GTCGCGCATACGCTCG	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TTACGCCTTCAATACC	ref_1762_RC	64	68	91	75	68	80	76	71	74	69
GACCTGCACTCATTGT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
AGCGTGTTAGATTCCT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
GAAATAATTTGGTTGG	ref_1762_RC	73	74	93	114	104	83	76	90	84	84
GCCACGCCTTTTATAT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
GTGCCCGATTTTTAAG	ref_1762_RC	11	14	17	12	17	20	24	17	11	25
TATGGATGCGGGTGAG	ref_1762_RC	80	79	87	81	63	67	80	78	75	62
CCTAGCTATAATAGAT	ref_1762_RC	9	14	2	6	10	6	4	6	7	4
GCGAGTATGTGCATTT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
CTCTCAAAACCCCCAG	ref_1762_RC	38	30	38	39	52	29	37	31	35	29
TCGTCTTTCTCCTTAG	ref_1762_RC	66	62	56	46	44	41	79	37	66	32
CCGTGCATGATACATG	ref_1762_RC	0	0	3	3	1	1	2	2	2	0
TGTTGGGGAGACTGAT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
GTATCGAGGCTCGCTC	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TTTCGCCTGCGGGATA	alt_1762_RC	105	113	134	95	92	85	94	99	100	97
GGTGGGTTATCCCTGC	ref_1762_RC	24	26	34	26	25	17	29	26	25	26
ATTCCAGTGCGGATCA	ref_1762_RC	13	8	13	5	9	5	9	7	14	9
TTCAAAAGTCTCTATT	ref_1762_RC	65	92	81	63	89	75	120	42	121	74
TGCCTGGTGCCGTCAG	ref_1762_RC	49	62	60	50	45	42	43	56	60	53
TGTACAGACGGGACGG	ref_1762_RC	10	22	18	10	16	13	15	16	21	12
GGCATCTTGATCCACT	ref_1762_RC	36	22	26	26	25	14	22	20	24	30
TAGAGTTTTAGCAATG	ref_1762_RC	23	22	16	10	20	18	14	17	16	8
CCGGCTCTCATGTCTA	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
CTGCCAAGTCTGATCA	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TACTCGGGCCGTGTAT	ref_1762_RC	13	23	21	14	11	13	16	20	21	3
TAGCTTGTGTGGTTAT	ref_1762_RC	65	53	78	75	77	62	75	63	84	42
GTCCACTGAACCACCG	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
GGACAGCTCGTTTGGG	ref_1762_RC	114	121	145	121	107	107	122	111	113	114
GTCTTGCGGACTCATT	ref_1762_RC	27	22	45	35	16	37	26	30	28	25
TCAGCCATGGTATCTG	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
GTCAACTCGAAGCCTG	ref_1762_RC	27	33	40	32	29	22	28	42	38	32
GCGTGTTGTTCCGCGT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TAGAACAGGACGGGCA	ref_1762_RC	2	8	4	2	6	2	4	1	2	0
GACCCTCTCTAGTTTC	ref_1762_RC	10	9	9	12	13	10	15	7	20	7
GTGTGGTGTAATCATC	ref_1762_RC	4	12	14	10	6	2	13	14	10	4
GGACGCTCCCTCTGGA	alt_1762_RC	6	17	10	10	9	7	19	2	23	5
ATTTCGCAGTGGTCGG	ref_1762_RC	40	48	59	46	39	43	56	39	64	43
CGCTCGATACTCTACT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
AGAACTGAAATTCTAA	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TACTACACCTTTTCCT	ref_1762_RC	0	0	0	0	0	0	0	0	0	0
TTCCTTATTGGATCGT	ref_1762_RC	2	4	5	1	4	2	2	3	6	2
GTACTGGACGTGTCCA	ref_1762_RC	17	14	12	10	19	8	8	9	9	7
ATTGGCATTGCTAGTG	ref_1762_RC	27	23	20	30	27	21	22	26	32	17
CAGGCGAATATTCAGT	ref_1762_RC	37	38	44	38	47	22	50	38	62	36
ATACGCCGATACCGTA	ref_1762_RC	18	16	20	21	15	18	25	25	16	19
TTTAACAGTCATAAAA	ref_556_RC	19	19	13	17	11	10	12	11	16	12
CTTGCGCATTTTAAGA	ref_556_RC	9	7	5	5	9	5	9	5	6	4
CGGAGACGCATGAATC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
ATTCGTCAGCGTCAGA	ref_556_RC	14	14	11	15	10	14	18	11	15	12
TGACTTGTGGCTCGAT	ref_556_RC	5	4	7	5	0	5	8	3	4	1
GAGTTGTGTCAGTTTT	ref_556_RC	18	14	31	22	17	11	24	20	31	15
TTTGATTGCTCCGGTA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TTCGGTCAGTTTGGGC	ref_556_RC	30	39	47	43	48	35	47	42	64	32
GAATTTTCGTTTAGCT	ref_556_RC	0	0	0	0	0	0	0	0	1	0
AGAGTCACGCTGAAAA	ref_556_RC	6	13	11	6	10	7	7	9	7	11
TACGACGCCGTGCCAT	ref_556_RC	40	51	34	52	48	40	44	27	47	36
CGAGAAGATTTTGGCT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
ACCCACATTCGTGGCA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
ACACACCATACTGGCG	ref_556_RC	76	91	88	97	94	66	101	65	98	76
AATCGAGCGTGTACTC	ref_556_RC	38	38	43	34	33	34	43	24	38	30
TTTTGCTTAGCATATG	ref_556_RC	203	223	229	217	217	198	268	181	222	179
TCTATGGTTAAACTGG	ref_556_RC	0	0	0	0	0	0	0	0	0	0
AGCCGGGCCGTGAAGG	ref_556_RC	180	229	233	187	210	175	241	174	238	146
TTTTACAATACCATGC	ref_556_RC	16	20	8	14	16	20	16	12	21	11
ACATGGCCTTGCACGC	ref_556_RC	11	2	16	4	4	6	3	9	11	6
TCGCTCGTCATTCTAC	ref_556_RC	25	39	34	25	36	26	55	23	41	28
ATTATGGGGTTTGGAT	ref_556_RC	13	14	12	12	15	8	17	9	7	12
CCAGCGTGCCGATTGG	ref_556_RC	2	37	5	2	24	6	24	1	42	7
TGATATTAGCCTACGA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CACGCTTTGCTTTCTA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TGGTTATTTTAGACTT	ref_556_RC	195	219	217	163	201	159	253	139	227	159
TTTGTGTAATGTACCT	ref_556_RC	25	31	30	24	40	28	49	11	43	13
TTACCATAACATGCCT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GTCAATATTGTTCCGC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
ACGGCCACTTATATAT	ref_556_RC	16	29	27	18	43	16	38	14	39	8
ATTTAAACATTAGTAC	ref_4037_upstream	1	1	1	5	5	3	6	7	6	2
CCTGCTACTACTCATC	ref_556_RC	91	222	123	102	231	79	223	90	249	96
GGTCTACTTGGAAGAA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CAACATTGTTAGTTGT	ref_556_RC	14	28	18	19	19	11	17	13	31	12
TATAGCATGGAGCTCA	ref_556_RC	6	3	5	2	4	4	8	5	7	2
AGACTTTTGTAGCTGC	ref_556_RC	8	14	16	14	22	9	9	10	14	17
TCATAAACGTTCCAAA	ref_556_RC	18	14	23	16	9	15	19	21	38	10
CATCTTAATCATTGAG	ref_556_RC	13	14	18	15	14	19	18	10	18	16
TTTGTTGTAAGTATCA	alt_556_RC	35	39	56	28	42	58	49	35	66	39
GAGGGGAGGTCCTCCC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GGTCCATACTGTTAAG	ref_556_RC	30	24	41	22	34	34	28	22	39	20
ATTAATAATGAGTTCG	ref_556_RC	23	19	20	13	23	17	18	17	21	12
TGTTTTTTTCGCGGGT	ref_556_RC	13	13	16	13	11	8	8	11	17	10
CGATGCCTTAGTTTAG	ref_556_RC	20	28	25	22	29	16	33	20	32	22
ATGCATCCGTGTCATC	ref_556_RC	36	64	46	35	52	34	56	37	67	33
GTTAGATCGCCATATA	ref_556_RC	6	7	4	4	3	13	7	5	7	3
TTTCATTCTTTCCTAC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CGTAACGCTTGTCGAC	ref_556_RC	190	221	210	181	250	207	297	154	285	166
TGGGTCGAGTTCCTTG	ref_556_RC	6	2	1	2	6	2	7	4	5	2
AGGTTACTTGCCTTTC	ref_556_RC	31	44	26	22	52	38	57	23	58	29
ATGTCAGCGCTAATAG	ref_5553_fdr	5	8	10	8	7	7	13	3	7	7
GTTGCACCTACCACCT	ref_556_RC	10	14	8	10	20	10	16	15	12	7
ACGTGTTTTCATCGTC	ref_556_RC	37	67	53	29	68	25	68	42	60	40
TGCGTTAAAAAACAAA	alt_556_RC	77	93	77	93	86	83	109	73	108	63
TTTGTATTCCGCCTCT	ref_556_RC	22	26	29	33	32	34	31	28	27	31
CTTGATTTCATTATCG	ref_556_RC	11	7	8	2	13	5	10	6	1	4
GCAAGCGTTCAATGAA	ref_556_RC	36	70	43	39	42	36	56	18	62	35
GGTCATCCGCCCGGTA	ref_556_RC	179	177	225	165	218	173	204	154	175	168
TCATAGCGTTCCTCTA	alt_556_RC	5	2	1	3	4	7	9	3	2	2
ACGCTCATAATTGATT	ref_556_RC	20	22	26	28	19	23	30	14	34	12
ATCGCAGCCATATATG	ref_556_RC	213	261	286	245	262	226	298	223	291	195
CCCCAAACTATACATC	ref_556_RC	7	8	19	16	18	8	16	15	12	11
CCGGTCGGCATAGGTG	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TCGGATTCAATTGGAT	ref_556_RC	12	20	24	15	22	13	27	13	23	16
GTTCATAGGATTGGTG	ref_556_RC	4	0	6	6	8	5	3	2	5	5
CCGTTCGTCCAAGGCG	ref_556_RC	25	76	33	39	74	24	84	30	96	23
TACGTGCCGTCACATC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TGAGGGCCCTACTCTA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CACCTCTCATTTCAGC	ref_556_RC	10	10	9	10	20	6	25	9	23	11
TGGCCAGTATTCTTAT	ref_556_RC	111	177	155	170	161	122	155	132	183	118
CACTGAGCTGTTTGAA	ref_556_RC	42	46	49	40	67	33	57	38	60	47
CTCCTCCCTTGGTCGA	ref_556_RC	23	75	21	28	64	27	65	23	59	15
AAGGGAACGCCTGGCA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TTTCAATTATGCTACT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTTCCGTCAATC	ref_556_RC	10	9	9	1	6	3	7	5	5	6
TACGACAGTGCATCTA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GGCGGCATCCATATCA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GCCAACAATGTTCTGT	ref_556_RC	26	23	18	16	26	15	27	19	26	14
ATTGAGTAGTGCGCAG	ref_556_RC	25	22	37	28	27	26	31	23	36	26
AGACGTTTAGTGATCT	ref_556_RC	19	24	25	13	20	10	12	12	18	20
GCGCGCCCGTTCAGAG	ref_556_RC	5	4	3	1	6	1	2	0	1	3
TTTTCCTCATATTTCC	ref_556_RC	6	5	9	7	8	11	7	14	4	8
GGCGATCTCTTAGTTA	ref_556_RC	4	4	5	4	3	3	6	2	4	2
TCCGGATCGTTTCCAA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
ACGTCCTGCTTCTCTG	alt_556_RC	32	33	35	32	58	26	50	27	42	36
CCTTAATGATCTGGAG	ref_556_RC	4	2	1	1	4	1	0	0	4	1
TGTTCGCTGGTAGGTA	ref_556_RC	2	2	3	5	2	7	4	6	2	5
ACGGTAACTGCCGCGG	ref_556_RC	6	7	11	4	4	2	4	3	4	2
CACATGTCCCTACTGT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GAATGATCGTGAACCA	ref_556_RC	26	17	18	17	24	24	29	29	23	21
TTACGTTCTAGAGAAT	ref_556_RC	8	21	5	10	9	8	15	6	17	5
GGCGGCTCTGAAGCAT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CCTTTCCTTTTATTCT	ref_556_RC	65	90	94	85	86	67	124	53	126	49
TTACTTTAGCGAAGTT	ref_556_RC	14	9	13	9	9	3	13	15	17	12
TCGTAGTCAGGGATCG	ref_556_RC	10	13	12	14	22	10	29	9	21	10
ACGCCCTTAAATAGTC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TTTCTTCCATTACCTG	ref_556_RC	20	28	14	25	32	20	32	18	40	21
CGTTCATGTAGCACGT	ref_556_RC	31	53	43	41	53	53	60	41	53	37
CACTCGTTCATCCGGT	ref_556_RC	87	100	93	72	96	93	81	76	83	60
GAGGTCACCACACCGT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CTTCCGTTTTGCGATC	ref_556_RC	12	15	19	8	14	6	6	21	16	11
TGCGCAGATACATAAT	ref_556_RC	45	100	81	62	92	58	90	51	94	50
CCGATCGCTAAATCCT	ref_556_RC	7	15	1	5	19	2	16	6	22	3
TGGTTTTGTTCCTTGA	ref_556_RC	113	119	122	94	114	101	148	101	124	55
AGCCAATGTGATGGTT	ref_556_RC	0	4	4	0	2	3	3	1	4	0
TACGCGCCCTTGGAGA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CTATCTACTATCTCCG	ref_556_RC	19	8	22	28	6	25	6	18	2	19
TCACTGTCCAGACCCT	alt_556_RC	49	57	47	43	55	52	60	39	67	21
AGTTCTATCCGGGTTG	ref_556_RC	36	34	28	35	43	25	39	27	37	32
TCATGTGTAAAGAAAA	alt_556_RC	35	28	36	26	26	25	42	34	36	42
GAGCTATGGTCTTTGC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CGCGGCTGCTAGAGGT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GTTTCTATTACACCAC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GCAGCGACCATCGTAA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TCACAATGTCGGTTGC	ref_556_RC	13	25	24	20	17	19	20	18	20	10
TCAGCTGCCTTCTGTG	ref_556_RC	43	53	58	45	66	46	65	27	77	44
ACGTTAATAGAACCGT	ref_556_RC	13	21	11	14	16	15	20	13	25	5
TGATTTCCGGGATACA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TATGACCGGCATGTGC	ref_556_RC	91	98	111	96	116	90	114	95	100	78
ATGTCATCGCTGTATA	ref_556_RC	4	7	10	4	4	2	12	7	10	3
TCCAACAACCTCGATT	ref_556_RC	25	27	27	13	36	21	31	15	34	18
GGCTTTTCTTGGGTCT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TACGTTGCTGAGGACC	ref_556_RC	9	3	8	7	2	6	16	8	7	5
GGTCCATCACGAGCCC	ref_556_RC	9	4	6	4	5	6	0	5	6	2
CTCCTACCGGCGTGGC	ref_556_RC	4	6	13	6	15	5	16	5	9	8
TCCATTTTAACTTCCC	ref_556_RC	3	3	1	5	3	5	2	4	5	2
GCGCGTTCATGTCTCC	ref_556_RC	13	23	19	18	17	27	23	24	15	13
TATGGATCTCCCGGGT	ref_556_RC	134	153	139	139	145	119	153	108	126	119
TACTTGAGCGATTGTC	ref_556_RC	8	10	10	14	9	7	10	6	13	5
CGTTTTCCTACATTCT	ref_556_RC	32	21	25	27	20	28	25	19	31	28
CAACTTGTTCGCTACC	ref_556_RC	33	51	66	53	51	50	56	44	81	37
TCGTGTGCTTAAGCTA	ref_556_RC	16	18	17	13	9	10	18	10	25	12
CTAGGGCGCGTTTCGC	ref_556_RC	7	1	2	2	5	3	2	4	4	2
TACTTGCGGGACAGAA	ref_556_RC	16	17	11	11	12	4	17	15	17	13
ATAATTTGAGCTTAGC	ref_556_RC	8	7	11	16	12	6	11	6	14	11
TCGCGCTTTGAACAAC	ref_556_RC	12	19	10	10	19	8	6	8	14	9
CGCAAACCGTCTCCCA	ref_556_RC	29	25	34	36	39	31	48	24	36	19
GTGGGAAGGCTATAAC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TTGTTATATCTAAGTG	alt_556_RC	2	5	5	3	7	3	9	2	10	5
GACTTTGAGTACACTG	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TCTACTCTTGGTTGTC	ref_556_RC	3	12	5	2	3	2	6	2	2	2
CAACCCTTTTCAAACC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CGGAATCGTTTCTAAT	ref_556_RC	21	20	31	28	19	16	26	13	21	27
GTCGATCACTATTACC	ref_556_RC	23	39	30	27	26	31	37	30	32	24
ATCGGCAGCTGTGTAA	ref_556_RC	54	49	52	39	49	52	54	46	44	39
GTTTTATGGGGGTTCA	ref_556_RC	94	116	93	94	106	74	108	71	120	79
CTGACCATTTTTCTGT	ref_556_RC	47	62	52	45	61	32	54	50	66	44
ACATCTTATTGGCTTA	ref_556_RC	14	20	19	11	11	17	15	15	14	11
TAGTATTTCAGCACTA	ref_556_RC	17	30	25	11	30	20	23	19	30	13
TCTACCAACAGTCTGT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
CTGGGGAAGTGTAGGA	ref_556_RC	30	32	44	28	39	24	37	25	33	25
CCATCGCGTATTTGTT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TCTTCGCCCATACTTA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTCGTCCGTCGT	alt_556_RC	24	33	42	31	39	32	46	32	46	24
TTGTGCCAGGATACAA	ref_556_RC	20	36	20	21	19	19	22	17	25	12
TCGGCACTTTTTCCGC	ref_556_RC	3	7	13	10	8	10	7	8	11	5
CAAATGGGTACGACTT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
GGTTTTCACATCTGGA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
ACCAAGTCGCTCCCGG	alt_556_RC	15	19	28	9	28	12	29	21	20	19
ACGCTCGAAATCCATG	ref_556_RC	39	40	43	41	50	45	42	28	50	37
ATCACTTCCTTAGTCA	ref_556_RC	55	70	68	45	82	45	62	58	79	51
GACTCATTCAAATGCT	ref_556_RC	68	47	87	64	47	77	59	58	72	47
ACCGCTAGTGGACTCT	ref_556_RC	37	39	23	48	36	36	40	29	50	26
GGAAATTAGGTGTCGG	ref_556_RC	129	141	168	118	130	113	149	116	166	111
TTTTTCCTTTTTGCGT	alt_556_RC	53	33	53	44	31	49	51	40	54	45
ATGCAAAAGTTCGTCC	ref_556_RC	3	1	5	0	4	3	2	1	0	4
GCTGCATAACGGCTGA	ref_556_RC	0	0	0	0	0	0	0	0	0	0
AGGAGTTGTGTCCGAC	ref_556_RC	12	7	12	9	17	8	5	1	14	6
CTATTAGCTCTTCCGA	ref_556_RC	3	8	3	3	0	3	5	6	4	5
TAATTCTAGAACAGTT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TCTGCCTCGTACACGT	ref_556_RC	180	240	182	171	233	155	226	181	240	146
TTACATGGCCCCTCAT	ref_556_RC	31	27	32	28	17	29	40	20	33	15
GCCTTATGCCATTTTA	ref_556_RC	15	30	32	28	42	28	25	17	26	25
TTATTAATAAATAGGT	ref_556_RC	7	9	19	11	9	7	21	7	19	9
TTCGGACAAGGTCCTG	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TTTGTTTCTTGGTTGT	ref_556_RC	1	7	4	3	5	1	2	2	1	3
TGTGGGGGCATGATCC	ref_556_RC	35	66	59	36	50	40	57	36	41	34
ATGCGTGCACCCTAAC	ref_556_RC	0	2	0	1	2	1	6	3	2	0
CAGTATTGTGTAGGAA	alt_556_RC	125	150	147	158	172	121	185	119	204	114
CCACCATCGTGCGGCC	ref_556_RC	4	68	6	3	60	6	77	3	74	2
GCGTGGAGCCCATTAT	ref_556_RC	0	0	0	0	0	0	0	0	0	0
TAACGTTACAGCCGTC	ref_556_RC	0	0	0	0	0	0	0	0	0	0
ATGCTGCCCGATATAT	ref_556_RC	0	1	0	0	0	0	0	0	0	0
CGGGAGTTTTAAAGAA	alt_5869_new	4	9	5	5	8	1	5	5	6	5
GCGTATCAGTTTTTGT	alt_5869_new	0	0	0	0	0	0	0	0	0	0
AATCCCAGCTCACTGT	alt_5869_new	0	0	0	0	0	0	0	0	0	0
CACCGCAGTCCGTGTT	alt_5869_new	14	15	19	12	23	11	12	15	18	17
ACCTCTTGTCCCGAAG	alt_5869_new	64	66	76	59	81	37	79	55	60	49
CAGAGGTAGTTCGTAA	alt_5869_new	40	48	48	32	46	34	44	24	39	23
GCTTTTCCCGTTCGGG	alt_5869_new	94	114	115	74	122	74	142	66	93	69
GTTTATAACGTGTGCT	alt_5869_new	22	31	23	23	30	18	29	27	26	17
CAGCCTATTATAAGTT	alt_5869_new	35	44	46	29	67	24	41	28	47	22
ACTAGCAGTGGTCTTC	alt_5869_new	5	9	10	8	13	12	9	9	18	6
GCATGTTCACGTGGTA	alt_5869_new	29	35	24	20	22	24	39	14	32	22
GCAGCCAGGGTAGTGT	alt_5869_new	11	44	23	34	47	19	64	18	82	17
GAGCTTTTTCACGTCC	alt_5869_new	50	45	50	41	51	48	47	59	53	27
AAAAAGCTCAGTTCCA	alt_5869_new	19	34	31	34	27	17	30	24	29	21
ATCACCGAACCCGAGT	ref_5869_new	90	115	95	84	123	96	148	79	129	97
CTCACAATAACGTTGC	alt_5869_new	11	13	18	19	25	9	10	9	20	21
CTTGCCATTCGCCTAG	alt_5869_new	95	101	95	97	121	109	108	92	112	78
CTATACCTCCAGACGT	alt_5869_new	35	24	28	23	36	25	33	27	34	34
ATTAGGTTGAATTGTA	alt_5869_new	25	20	39	25	37	24	28	21	25	18
CTGGAAGGTATGTTGT	alt_5869_new	31	39	57	35	38	34	39	21	33	38
TCTAATACCAGCGCTT	alt_5869_new	9	12	12	16	20	11	17	12	11	15
GTCGACCATAATTCCC	alt_5869_new	20	32	35	27	25	21	29	21	29	16
ACGCTTTTAGGTTATC	alt_5869_new	15	29	22	22	22	14	27	30	25	15
TTCTCGTCTTATCCAC	ref_5869_new	117	127	124	126	164	123	132	109	154	106
GCGTGGGGAACACGAA	alt_5869_new	136	147	164	168	145	136	143	133	157	124
TCTTCTACGGCTCTGT	alt_5869_new	14	21	19	16	21	26	22	15	19	10
CTGTCCAAGTCGAAGA	alt_5869_new	26	25	37	21	30	23	23	28	24	21
GACAGAATCTATGCAA	alt_5869_new	45	48	69	35	73	53	73	51	62	47
GTCGGGGCTACTCCTC	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TTTCGTGCTGTGGTGC	alt_5869_new	38	47	34	36	34	25	42	30	47	28
TCACTCTTTAAGGTAC	alt_5869_new	17	22	32	18	15	16	29	30	18	21
TCATACATTGACAATT	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TGGTGTCAGACTATTA	alt_5869_new	98	112	108	124	101	75	100	91	101	90
TATCGAGAACTAGTTC	alt_5869_new	0	0	0	0	0	0	0	0	0	0
GTCCGATAGTGTGGAA	alt_5869_new	2	5	2	2	4	2	1	3	2	3
ACCTCCACTCGCTCTT	alt_5869_new	18	51	28	33	56	28	44	14	67	21
TACTTCCTCATCTTTT	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TATAACGGTTCCAGCA	alt_5869_new	17	23	20	16	20	20	26	21	24	15
AGTCCCGAATCCACTG	alt_5869_new	168	355	211	198	465	152	387	183	465	158
GGGTCGGTGCCTTTAG	alt_5869_new	26	28	20	32	43	19	36	23	36	20
CTCCTATGTCCGCCTA	alt_5869_new	44	49	45	40	62	38	42	61	68	46
TGAAATCGCAGGGGTA	alt_5869_new	14	18	17	17	11	16	10	4	15	10
TAATAATGACATATGT	alt_5869_new	50	34	45	53	42	62	51	31	53	49
CGGACCATTAGAATTT	alt_5869_new	8	5	7	5	6	6	2	7	9	6
CAAGCAAGAACTCTGT	alt_5869_new	8	11	16	12	8	13	11	8	14	9
TGTATTTTTTTAATAC	alt_5869_new	4	2	4	4	6	8	3	5	4	3
ATCCGCGTATGCTAAT	alt_5869_new	60	61	59	43	83	47	63	46	83	49
CGTGATCACCCCGGTA	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TGGATCCGTACTTTGA	alt_5869_new	130	125	172	123	148	124	151	104	162	126
AATTCATGCCCTCTTT	alt_5869_new	6	4	11	3	12	15	7	10	9	1
CAAAGATCGCCCAGCA	alt_5869_new	47	40	48	41	60	38	35	56	36	31
CGTACCCGAATTCACC	alt_5869_new	96	171	112	123	140	101	158	86	161	79
TGGCCTGACGGCTATA	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TGACTTCCACTATTCG	alt_5869_new	25	26	38	19	39	29	39	24	33	22
CCGTCGCCGGTGATGC	alt_5869_new	51	71	66	49	87	52	75	82	87	55
CCCTACGCCCTTCGTT	alt_5869_new	47	64	60	55	63	36	64	47	70	33
TTGACCGGCTGCGCAT	alt_5869_new	8	19	16	8	17	15	15	4	28	7
TGCATATTATGATGCC	alt_5869_new	17	16	14	23	18	20	15	13	11	13
TGCCTTCTAGTGGGCC	alt_5869_new	65	79	84	67	69	62	59	66	86	70
GTTAAGGACCAAATGG	alt_5869_new	45	47	37	33	41	35	54	22	52	46
ATCGTACATTGGAGCT	alt_5869_new	15	13	16	18	7	15	24	11	17	19
TACTAACCTAGGCAGA	alt_5869_new	22	17	17	23	27	15	28	16	23	13
CCTGCGAGGTTGTCGC	alt_5869_new	5	32	9	8	26	11	17	8	23	5
GATTTCTCTAATTTTT	alt_5869_new	2	0	1	3	2	3	4	4	3	1
TTTCGTTGAACATAGT	alt_5869_new	5	15	13	14	27	19	19	16	22	20
CCCACAGTAAATAAGG	alt_5869_new	0	0	0	0	0	0	0	0	0	0
ACGTTCGCGCAGACTT	alt_5869_new	9	6	6	12	4	2	7	1	7	3
ATCCTTATTACGCTTT	alt_5869_new	0	0	0	0	1	0	0	0	0	1
TAGGTTAGTCTAGCTC	alt_5869_new	10	19	12	12	11	12	11	19	14	12
TCTGACACTCCAATCC	alt_5869_new	70	77	123	70	83	90	88	73	88	74
TATCGTTGTAAGTAGC	alt_5869_new	88	101	95	74	92	78	110	77	126	77
ATCTACCGTCTATTTC	alt_5869_new	17	17	11	19	16	15	24	11	17	10
GCGCCTTCACGACCAC	alt_5869_new	0	0	0	0	0	0	0	0	0	0
CTCATTTGGGCTTTCG	alt_5869_new	3	6	4	2	7	3	8	1	6	4
CATCGCCTTAATAGGA	alt_5869_new	34	36	44	45	40	32	45	33	46	22
TATATTGAGCAAAAGT	alt_5869_new	104	95	112	93	107	84	114	83	109	73
GTCGGCCTCGTTGACC	alt_5869_new	9	19	16	10	15	7	19	7	13	10
AAGTTCCAGGGTCTTT	alt_5869_new	102	135	124	108	127	87	133	83	141	75
TGGCACGATTTCACTG	alt_5869_new	43	44	61	46	55	49	56	36	60	26
GTGTAGCTGCTTAAAC	alt_5869_new	50	80	75	42	84	63	96	57	109	52
CACCCCATCTCTAACA	alt_5869_new	17	18	18	20	27	21	27	19	31	10
CTCGTACTTCTGGAGA	alt_5869_new	1	2	1	2	2	2	1	0	6	0
TTTGGATGGTCGCTGC	alt_5869_new	111	120	168	140	115	140	137	114	111	132
CTCATAACGCCCGGCT	alt_5869_new	3	4	7	10	1	2	5	1	0	2
ATGCAGGGGTCGTATC	alt_5869_new	11	29	25	23	30	25	29	22	26	24
TATCTTCGGGAGGCCC	alt_5869_new	23	37	21	15	37	17	36	19	34	26
AACGTTAAGTAAAATT	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TCGATCGGCTAGCACC	alt_5869_new	41	59	70	60	79	69	83	39	51	37
ATATCATCAAGCTCTC	alt_5869_new	0	0	0	0	0	0	0	0	0	0
CTTCTCTTACACCGCG	alt_5869_new	88	81	104	98	90	72	90	74	87	83
GTCGGCATTTGTCATG	alt_5869_new	64	94	86	80	96	70	74	73	98	68
CTATACCTAGTTCGTG	alt_5869_new	6	17	12	19	27	10	22	11	28	17
CCAGAGGATGAGTGCC	alt_5869_new	13	14	19	10	13	7	22	10	12	8
CATCCGTTTATTTGAA	alt_5869_new	141	155	155	137	179	141	190	135	194	107
CGCACTGTTCCGAAAT	alt_5869_new	31	40	36	23	30	24	43	25	47	16
TCTCAACGGCACGCTT	alt_5869_new	42	53	61	58	45	59	56	53	65	43
CCCGTTTAGAGATCTA	alt_5869_new	30	28	22	15	25	23	31	23	24	19
TGAGAACTCAGTCACC	alt_5869_new	12	10	14	9	8	11	9	7	3	7
ATCAGCTATGAAATGT	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TCGTGTGTCGGTAGCG	alt_5869_new	8	8	11	4	2	10	5	6	14	8
CGGTTCTTTACTTGTA	alt_5869_new	0	0	0	0	0	0	0	0	0	0
TGGGATTTCATCTAAC	alt_5869_new	0	0	0	0	0	0	0	0	0	0
ATCATTTCTCTAGGTT	alt_5869_new	19	25	17	17	23	14	29	21	28	15
CCCCTGAACTATTTTA	alt_5869_new	11	6	2	2	5	7	11	4	7	6
TTACTGATATCAAAGT	alt_5092_reverse	45	31	40	37	36	26	38	29	42	22
GAGTCTGCCTATACCT	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGCAACGCGGTGC	alt_5092_reverse	40	52	51	44	45	37	68	35	54	39
GAAGTGCCCGGTCACC	alt_5092_reverse	67	86	100	76	125	61	95	96	102	75
ATACTCTATATGCAGA	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
GGAGATTTTCTTTGAT	alt_5092_reverse	15	23	27	24	29	22	29	19	29	27
AATGGTTATGAGATGT	alt_5092_reverse	34	40	51	32	44	35	42	40	39	24
TCAATTCCAGTGGTTC	alt_5092_reverse	77	92	95	69	114	86	93	63	107	74
CCGGAGATTGCACTCT	alt_5092_reverse	102	142	118	103	116	100	120	105	156	106
CTTCGTTTACGTGTTT	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGTACCTCATTTC	alt_5092_reverse	4	4	2	6	7	4	6	7	5	7
ACTAAGTACTTCAACG	alt_5092_reverse	37	40	26	30	47	24	28	17	39	27
ATGTGGCTTGTTGAAT	alt_5092_reverse	17	34	29	34	42	46	48	22	38	22
TGCCATCTCGGTTTGT	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGCACATCTTGTG	alt_5092_reverse	28	49	15	33	46	23	48	31	31	17
TGTATAAGGTGCGCTA	alt_5092_reverse	139	186	155	134	219	118	220	149	226	132
AGGTTCTCGTTTACCT	alt_5092_reverse	21	36	32	17	42	26	51	23	39	25
AAGGGTTGAACGTAGC	alt_5092_reverse	16	15	16	16	26	16	30	25	32	15
GACACCGGCAACAGTA	alt_5092_reverse	6	1	2	1	4	4	4	2	9	1
ATCTCATCGGATCGGT	alt_5092_reverse	28	26	29	33	35	20	38	25	41	23
CGGCTTGGTACATTTC	alt_5092_reverse	18	12	14	13	18	16	21	13	14	10
GCCTGCGCCTCCACAC	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TTGTATTTCTAACCCA	alt_5092_reverse	35	40	43	40	37	34	38	22	49	32
TCGTGGAAGATCTCAG	alt_5092_reverse	16	23	11	8	25	13	13	17	27	13
TCTGTACTTCCCATTG	alt_5092_reverse	231	298	229	226	288	215	303	186	316	209
TGTCATGCTTAGGCTC	alt_5092_reverse	40	69	49	66	45	44	59	58	67	39
GATTACAGCGGCAGGC	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCATGGAGCGCCA	alt_5092_reverse	6	3	5	6	3	8	8	8	7	6
TCGTTACATCGGGGGT	alt_5092_reverse	27	33	40	26	42	25	33	27	34	30
GCTTCGTGTTTGTGCC	alt_5092_reverse	21	42	30	31	39	27	30	27	51	23
ACAGTTCTCTCGAATT	alt_5092_reverse	77	98	93	70	93	54	90	70	81	64
AGCCATGCTGCATGCT	alt_5092_reverse	0	1	1	1	0	2	4	0	2	1
CATGATTGCTGCCCAG	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
GCAACGGTACTTCGGT	alt_5092_reverse	3	7	2	1	2	1	4	0	6	4
CTCGTCCGTTGGTAGT	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TCCATGTTCGCTAACG	alt_5092_reverse	10	21	25	12	20	13	21	13	21	5
CAATAGGTGTTACTAA	alt_5092_reverse	12	17	18	24	25	14	24	17	23	17
CGTAGAATTCCGAGAA	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TGACATGCAGATTTCC	alt_5092_reverse	6	10	13	5	10	13	13	10	14	5
GTTAGCTAGCTGCGGT	alt_5092_reverse	3	6	1	5	3	2	5	5	3	3
TGGCCCTAATTATTAT	alt_5092_reverse	56	59	71	49	42	41	53	45	53	39
CTCTTTTGAGTAGTTT	alt_5092_reverse	29	74	46	44	56	33	46	55	72	37
ACTTCTTGGCTCGCCC	alt_5092_reverse	2	5	3	3	5	0	4	0	4	2
GCTTTTCAAAGGTCGG	alt_5092_reverse	9	13	20	12	19	18	12	12	28	12
CCCTGGGCTTCCAGTC	alt_5092_reverse	12	10	12	5	6	8	16	2	7	4
AGATGTACGCCGTCAA	alt_5092_reverse	6	5	13	3	9	9	14	7	15	9
ATAGTTTTATGGAGGA	alt_5092_reverse	143	134	126	134	148	140	169	128	169	118
GCACTTATGCTGATAC	alt_5092_reverse	23	30	19	21	18	19	20	16	30	16
GATGTGCGCGGTTCCA	alt_5092_reverse	41	43	54	55	68	51	63	26	48	38
AGGGATTCGGAGTTGG	alt_5092_reverse	53	54	52	47	53	61	53	54	60	39
TGCCTATTCGTTCATT	alt_5092_reverse	9	10	18	5	9	9	7	5	11	7
TGATTCACTTGTAGCT	alt_5092_reverse	62	86	80	63	95	68	81	57	71	62
CTCTCTCCGCTAAGTA	alt_5092_reverse	16	3	11	7	12	5	12	8	12	3
TTTAGTGGATGCTACA	alt_5092_reverse	11	10	5	10	10	7	10	6	11	6
CTCATATCTTCAGCCA	alt_5092_reverse	25	35	41	25	35	36	44	23	44	22
GCTTAAGTAGCCCGTC	alt_5092_reverse	28	37	42	38	57	29	42	41	50	29
TGGTCGGCCCATATAA	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGAGAGGTATTTT	alt_5092_reverse	58	57	64	51	72	55	60	56	53	52
TATGTATCCATAACTT	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTCGGTTTGTCC	alt_5092_reverse	13	12	12	12	11	10	9	11	2	5
TCATTACTTACCGGGG	alt_5092_reverse	11	85	18	15	80	14	94	16	122	14
CATTTAGTGAGTAATT	alt_5092_reverse	28	36	43	23	41	31	57	33	46	30
ATGGTTTGCCTTTGTT	alt_5092_reverse	18	15	18	13	18	10	14	7	22	8
CACGAGCGTATCTCAT	alt_5092_reverse	34	45	24	20	42	30	55	29	44	35
TTCCACCCGGTTCCGG	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGGTGAGACGCT	alt_5092_reverse	62	68	71	59	83	61	79	54	78	45
CCACAGATTGAAACGT	alt_5092_reverse	7	21	12	8	15	11	8	5	17	10
GTTAGCTGGCTGCGGT	alt_5092_reverse	22	37	32	31	19	22	32	16	34	32
GCGGCTTCATTCAGAT	alt_5092_reverse	9	13	17	8	14	6	8	17	16	9
GCTGCCACCCCTATCT	alt_5092_reverse	27	29	31	31	34	24	37	17	36	13
GGCAAGCCTTTAGCGA	alt_5092_reverse	16	23	11	13	14	15	25	14	21	9
GGCAAACGATCGACAC	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
CTTACTCTCAGGATGG	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
CACACCTTGGTTTCAA	alt_5092_reverse	0	0	1	1	0	0	1	1	2	1
GTAATAGAGTTTAAGG	alt_5092_reverse	59	92	72	67	89	49	115	65	81	69
TTCGTGTCTATGCGTT	alt_5092_reverse	37	44	31	11	50	32	47	16	39	26
GGTCTCTCATTCACAG	alt_5092_reverse	10	12	8	3	8	7	12	7	17	9
AACTATGGGCTCTTTC	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTACCCTCAATTC	alt_5092_reverse	13	17	19	16	18	9	19	13	22	15
AGTCATGAAAGACTCT	alt_5092_reverse	11	6	7	6	10	1	13	10	8	4
AACTATGAGTTATGCC	alt_5092_reverse	9	15	18	7	10	13	5	5	10	8
TGTACGATTCATTACC	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TGCGAGCTGACAGATA	alt_5092_reverse	64	70	65	62	76	67	78	63	74	44
GCATCTGTGTACCTAT	alt_5092_reverse	92	125	112	82	133	109	166	106	148	87
CATGGCCCTTCAATCG	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TCACAATATTAAACCT	alt_5092_reverse	171	202	202	147	183	189	229	139	238	136
ATCTTCTGTTTAGTTC	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTTGGTGTAACA	alt_5092_reverse	36	28	36	29	41	27	26	33	40	24
ATGGTAGGGGCCTGCA	alt_5092_reverse	6	10	1	4	6	6	8	7	6	5
TAGCTTGTTGTTAGCT	alt_5092_reverse	61	103	81	61	105	66	106	67	101	60
ATGATTGAGGCGGGGA	alt_5092_reverse	31	36	29	31	51	24	47	29	41	24
TCCCGGCTCAGTACAG	alt_5092_reverse	0	0	0	0	0	0	0	0	0	0
AAGTGTAGCCTCCGTA	alt_5092_reverse	37	42	30	28	44	32	41	30	51	28
CCATCGTAGGTCGAGC	alt_5092_reverse	17	14	26	13	25	23	26	12	22	22
GATCATGAGTCCTCGT	ref_2283_upstream	19	27	18	21	33	18	41	13	38	13
TATCCATGGGACAACA	ref_2283_upstream	17	47	20	27	38	32	47	21	34	21
GCCCTCCCTGCTGCGT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CACTGTGGCGAATGGT	ref_2283_upstream	62	140	93	48	108	71	106	46	128	40
TTTGAGAAATGCGGAG	ref_2283_upstream	31	50	36	27	45	33	55	32	58	29
GGCAGACCCTTTGGGG	ref_2283_upstream	0	0	0	0	0	0	0	0	1	0
TTTCGAGCTGCGTATT	ref_2283_upstream	13	10	9	2	8	14	17	4	22	7
AGCTTGTATTACACGA	ref_2283_upstream	38	46	28	19	46	26	53	26	58	29
GATCTATACTTCCAGA	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CCCAGGCATCATCCGC	ref_2283_upstream	48	78	47	46	62	52	77	64	100	38
TGTCGACGAACTTTTG	ref_2283_upstream	25	26	15	21	34	14	30	17	27	11
GAACTCAGGGGGCCTG	ref_2283_upstream	16	26	17	18	32	16	30	11	36	14
GTGCTAGGTTCAACTT	ref_2283_upstream	32	74	44	20	75	26	77	30	80	22
TATCGAGGCCTGCTTC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TTATACCCATGGGCAT	ref_2283_upstream	11	10	9	5	10	7	9	3	11	2
GTGATTAATCATTACG	ref_2283_upstream	20	50	22	15	31	18	36	18	39	20
GACCCTAAAGAGATCG	ref_2283_upstream	0	8	2	7	4	3	3	3	7	5
TTTGAATGGTGCCGTC	ref_2283_upstream	27	28	19	15	19	19	24	20	28	13
TTTTTTATCTTGGTTG	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGTTACTGTTAAC	alt_2283_upstream	29	67	35	31	49	48	62	29	72	18
CCAATGAGGAAGATGT	ref_2283_upstream	29	44	41	24	52	20	54	21	58	27
TCACGGTTCACGGTAG	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CTACGTATCAAGCCAT	ref_2283_upstream	7	23	18	14	23	17	30	8	17	11
TAAGGGTATTTATCTC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAATCTGGACGGT	ref_2283_upstream	40	81	46	50	46	52	47	31	65	26
CGCATCACCGTCTTAC	ref_2283_upstream	5	9	4	4	3	4	3	2	9	4
AGCCTCTCACTCGATC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
ATACAGATTTGCACTG	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGCCCGTCTATGT	ref_2283_upstream	18	45	9	11	32	17	49	12	42	10
GCGGCTAACTCATTCG	ref_2283_upstream	19	24	20	11	24	18	24	13	16	16
GCGAGAAGCCACACCT	ref_2283_upstream	26	34	22	15	41	18	41	18	32	22
GTCCGGTGGCTATTTG	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTGCCAATCTATA	ref_2283_upstream	8	16	11	7	8	12	15	2	8	8
CCATTAGGGAATACAT	ref_2283_upstream	46	84	65	64	82	41	89	55	119	33
ATTAAATGCTATGGAT	ref_2283_upstream	32	56	40	35	59	48	50	45	64	38
CAGACCGACGTACATC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTCGTGTTCGCTA	ref_2283_upstream	33	81	32	25	79	39	55	46	80	24
TTTGGTTTATGTGGAC	ref_2283_upstream	37	64	37	35	76	48	56	32	75	37
CGTTGACCTGTTCAGC	ref_2283_upstream	39	56	34	41	88	43	82	36	74	30
GAGGCCTTAGTTTTCG	ref_2283_upstream	83	118	105	72	113	83	135	62	124	65
ACTTTCGTGCTTACAG	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GATTTCAATTACGGAT	ref_2283_upstream	1	10	7	8	12	7	11	12	14	8
CATTATGGGCTGGATG	ref_2283_upstream	22	25	24	18	26	23	47	17	30	23
GCAATATTGTTACCCT	ref_2283_upstream	26	48	18	16	36	16	43	17	58	22
GGCCGTCTAACCTACT	ref_2283_upstream	46	109	65	57	109	42	99	39	99	40
GGTAAGGGCCTTGCAT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTTGGCCGCCGAT	ref_2283_upstream	16	23	16	10	27	17	20	17	19	14
GAATTACCTGTTGAAC	ref_2283_upstream	0	2	2	4	9	2	2	5	1	0
TCCAGATGTTCTTTCA	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GCATGACATATTCAGC	ref_2283_upstream	18	56	18	19	40	8	41	15	46	16
TGAGTCTCGGGGGTAC	ref_2283_upstream	27	64	31	31	41	37	52	22	45	21
GTCATAGGTTCACTGC	ref_2283_upstream	16	40	28	19	34	15	53	12	48	20
GTGGGCGGAGTGTTTT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTTCTATCCCATT	ref_2283_upstream	16	35	32	27	26	17	32	19	34	14
AGTTCGTTCATCTCAT	ref_2283_upstream	11	13	13	5	13	1	13	14	10	10
GTGTTGACTGCGTTTT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GTTACCAAATGTAGGC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTCGAGTGTTCAT	ref_2283_upstream	77	206	100	65	131	86	162	69	179	61
ACTGGTCCGTTTGGCT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTCGTTTTTCTTT	ref_2283_upstream	26	33	36	20	36	29	40	17	32	20
GCCATTCGGCATCGAG	ref_2283_upstream	11	24	27	25	33	23	37	18	23	18
CAGGTGGTTTCACATG	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTTACAACTTTA	ref_2283_upstream	32	67	31	20	57	16	57	38	63	30
TTATGGCAGCGACGTA	ref_2283_upstream	72	74	59	58	106	54	77	45	80	46
CAGGGAAGGACGGTTT	ref_2283_upstream	30	42	38	38	42	31	40	33	44	29
ATTAATGACAATCGTC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CAGTATTGAGGCTAAA	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CCATCCCCGGCCCGCC	ref_2283_upstream	60	56	59	53	67	40	69	47	68	47
CTGAAGCCGGCGCCTT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCCCCTAGCCGGG	ref_2283_upstream	2	9	5	3	15	3	13	4	13	7
GCTAACGCCTCTATAA	ref_2283_upstream	7	6	0	1	3	0	3	2	6	2
TATGTTATGGGTGCTA	ref_2283_upstream	32	45	28	21	50	18	61	28	63	22
AATCGGCGTGGTGGGA	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCGTTCTTCCTCT	ref_2283_upstream	9	9	9	16	10	3	15	7	15	2
TGACTGATCCATCCTT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGGGCGCGCCTGT	ref_2283_upstream	2	3	2	0	1	1	1	0	4	0
TTTTTTTATCTTGGTT	ref_2283_upstream	14	37	19	13	36	21	44	17	51	15
TGTTAAAGTGGATGCT	ref_2283_upstream	4	5	5	3	4	3	10	8	14	0
CCAAACCATTCGAGGC	ref_2283_upstream	11	36	14	15	26	9	30	13	34	11
AAGGCATGTATCCAGG	ref_2283_upstream	63	139	74	68	121	56	118	64	123	70
GTAGCCTCCCCATGCC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TATCCTAGGTGACCGT	ref_2283_upstream	11	16	24	13	20	12	28	13	25	18
TCCCGTTAAGTGGGTA	ref_2283_upstream	1	8	2	2	1	0	1	3	6	2
ACATGATTACCGGACC	ref_2283_upstream	19	36	36	31	44	28	40	15	43	19
ATTCGCCCGCTACAGT	ref_2283_upstream	24	28	14	15	46	23	27	14	29	23
CATTCTTTGACAAAAT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGCGGGGCATGCG	ref_2283_upstream	11	15	6	5	10	10	14	8	19	13
CATTGGCGTCTCATCT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TACATAAGTGCCGAGA	ref_2283_upstream	2	6	2	6	9	2	9	1	8	2
GGGTTCTTAATCTAAA	ref_2283_upstream	6	10	3	7	9	5	13	7	10	5
TCGAATGCATCTTTAT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTATCAGGATAAT	ref_2283_upstream	12	27	16	20	13	11	18	19	33	8
AATCTCCAATGAAGTC	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
ACTAGCTCAACAGGAG	ref_2283_upstream	7	21	7	13	19	5	5	5	13	4
ACCCTGCTAATGTCTA	ref_2283_upstream	22	56	37	32	58	28	67	35	53	33
TTTTTCTCACGCATTT	ref_2283_upstream	28	27	24	17	23	18	36	13	43	15
CCAGTCCAATCTAGAA	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
GGACTGGGTACTTGTA	ref_2283_upstream	36	50	55	33	82	38	71	24	60	29
TATGCCTGATCTGAAT	ref_2283_upstream	7	16	7	7	13	5	11	7	12	6
CCAGCAAGTCCCGTTT	ref_2283_upstream	4	33	3	7	31	6	40	1	39	0
GATGGCGTCATCTGCG	ref_2283_upstream	15	11	18	14	20	16	19	11	15	10
TCCAGCCAGGCCATGT	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCAGTGGATACAG	ref_2283_upstream	16	25	20	24	20	7	21	21	35	15
AGCAAGAGGATCTACG	ref_2283_upstream	16	14	9	8	15	10	14	8	8	4
GGGTTGTAGTGTCTTC	ref_2283_upstream	18	49	27	25	51	31	52	30	54	16
CCATGTCTCTTGGTCG	ref_2283_upstream	30	101	25	38	113	26	123	36	122	28
TCACGATTCACGGTAG	ref_2283_upstream	72	175	108	73	172	78	174	74	189	53
CCTGGTCCCTATGTAC	ref_2283_upstream	30	63	54	31	69	25	71	24	87	50
GGTAATAACGTATTAG	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGACTCTGCATC	ref_2283_upstream	21	43	37	19	45	36	47	23	45	27
TGTCAAGCCTGATTAA	ref_2283_upstream	0	0	0	0	0	0	0	0	0	0
CGAACGTACAGACAAT	ref_2283_upstream	40	47	38	33	40	37	56	21	43	25
TCCACCACCCCTGGGA	ref_2283_upstream	5	1	1	3	3	4	4	2	5	3
CTAAGGAACCGCGCGC	ref_2283_upstream	25	51	29	30	48	31	51	28	39	27
GTCGCAAACTACTTTA	ref_4832_reverse	34	46	33	16	43	23	44	40	55	17
CATGCAACCGCCTTGG	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GATGAAGTGCCAAGTA	ref_4832_reverse	45	72	62	48	77	58	65	39	78	42
ACATCCGTTTGAAAGA	ref_4832_reverse	3	6	2	1	2	4	1	1	5	2
CTTCATGCCTGTTACT	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCCTCGTACCAGC	ref_4832_reverse	2	9	3	3	5	4	15	4	7	5
GCCAGGTCTCTACAGC	ref_4832_reverse	7	20	13	24	18	16	15	8	25	9
TGATTATCCATGTGGT	ref_4832_reverse	45	49	65	34	65	54	66	42	64	50
TCGATCGTTTCTTGCA	ref_4832_reverse	12	25	32	13	21	16	23	16	29	11
GGTAATTTTGGACTCC	ref_4832_reverse	29	57	48	34	61	32	70	27	53	44
TAGCAGAACAGTCTAC	ref_4832_reverse	25	25	29	20	37	18	43	24	30	12
TATGCTCAAGATATCC	ref_4832_reverse	81	97	80	78	100	70	104	66	90	75
TGGGTGACGGGTCGGT	ref_4832_reverse	19	14	13	9	23	20	21	9	16	12
GTCTCGCCGCGAATCT	ref_4832_reverse	0	1	0	1	1	2	0	1	1	0
GCGTGCTCCGGCCTAA	ref_4832_reverse	20	39	38	21	46	15	48	18	54	11
CTCCCGCACGCAGAAT	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GGATCGGCTTTTTCGT	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GATTTTTCCTTACCTT	ref_4832_reverse	0	2	2	1	2	0	2	0	2	0
TGGTCTGTGTAAGTGC	ref_4832_reverse	16	10	7	14	18	12	18	7	21	12
ATAAGCTCTTTGTCTG	ref_4832_reverse	43	41	39	19	42	26	35	17	35	19
ACATCCTAATATTTAG	ref_4832_reverse	16	20	14	18	28	18	34	13	35	14
TGGTGTTGTTGCACTT	ref_4832_reverse	9	12	17	14	22	6	21	11	27	16
TGTACGTATACTCTGC	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTTGCTAACTTCG	ref_4832_reverse	24	44	24	28	61	28	60	35	51	15
GAATGCTATACGATAG	ref_4832_reverse	10	25	20	20	20	18	25	29	38	15
GTGTAAGCCAGATTCT	ref_4832_reverse	17	27	32	26	29	15	24	21	44	19
ACACGCTTACCATTAA	ref_4832_reverse	33	79	31	37	79	24	95	32	95	26
GGTGGACCCAAGAGCA	ref_4832_reverse	7	26	14	20	20	13	21	9	16	13
AACCAGTTGTCTATTT	ref_4832_reverse	25	56	27	30	51	27	51	26	50	26
GGCCCTTTACTGTGTG	ref_4832_reverse	39	55	54	39	58	39	78	40	88	34
TCATTGCAACTCTCAC	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
TGAAGGGGGGGGACGG	ref_4832_reverse	49	41	62	31	63	26	52	45	48	36
GCGAGATTCCGGAAAA	ref_4832_reverse	22	25	23	23	28	15	28	16	17	13
TGAAGGGGGGGGGACG	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
TTATGTGTGTGAAGTC	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCTTGCTTGTCAC	ref_4832_reverse	18	20	18	14	19	12	17	11	17	16
ATATATCGGGTTATTC	ref_4832_reverse	52	81	54	62	80	58	76	46	95	55
CCTTGTGCGACGTGCT	ref_4832_reverse	19	16	18	20	32	21	36	25	32	21
CTATGAGGACGCAGTC	ref_4832_reverse	51	62	51	43	67	43	71	37	79	40
TGCGGCCCTTCTGAGA	ref_4832_reverse	169	221	219	151	195	148	203	131	252	132
ACGCTTTTCGCTTTTA	ref_4832_reverse	8	19	16	7	16	20	15	13	13	6
GTGTATAAAAGGGTTT	ref_4832_reverse	1	1	2	0	0	2	0	0	0	1
ACGCTGGCTGGCTTAC	ref_4832_reverse	21	21	25	38	30	18	36	36	29	18
GGCGATTCACCTTTGA	ref_4832_reverse	6	12	6	5	9	6	7	2	18	2
GGTGCTCGTGCGAATT	ref_4832_reverse	22	44	17	23	35	24	46	26	44	18
GTCATCATCTGGGGTA	ref_4832_reverse	89	78	91	98	94	87	99	79	100	94
CTCCACTCATGTATTC	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
AATATCAAAGGCTTTA	ref_4832_reverse	102	120	121	92	145	86	125	77	145	93
CTCATTACTAATACAT	ref_4832_reverse	5	12	7	7	11	11	17	6	13	10
ATTTTTGCATCTTTTT	ref_4832_reverse	50	77	70	52	93	49	59	43	59	42
CTTTAGCATCACCAAT	ref_4832_reverse	59	75	52	58	83	52	91	39	74	58
AATCGCGTAAACTTGC	ref_4832_reverse	40	59	36	39	60	31	62	47	62	38
CGCTAACATTCCTGCC	ref_4832_reverse	1	3	4	0	2	0	1	1	2	2
CAATGTACCTTTATGT	ref_4832_reverse	58	58	58	62	79	57	81	38	81	39
CTTCACTTGTATTCAC	ref_4832_reverse	0	2	0	0	0	1	1	3	2	0
AGAGGTTAACGACCAA	ref_4832_reverse	12	19	20	15	29	18	19	17	25	17
ATAGGACGATCACCGT	ref_4832_reverse	43	34	36	26	25	23	30	19	35	23
AGGAACGGGTCAACAC	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
CTATTGTACCTTTGTG	ref_4832_reverse	31	61	33	35	50	27	61	34	66	31
TTGTACAGGGGCTGGC	ref_4832_reverse	21	30	16	18	19	15	24	11	27	19
GGTATCGACTGTTTTC	ref_4832_reverse	16	18	15	15	18	11	25	11	20	14
AGAATTTCAACGCCAG	ref_4832_reverse	52	36	50	36	47	47	58	34	58	27
CGAGTTCCCCTCATCT	ref_4832_reverse	10	23	17	13	24	14	18	14	24	9
TGCAAGGGTGGCTCGT	ref_4832_reverse	23	43	35	22	36	23	34	12	46	33
TGTTTGTGGTCATCGG	ref_4832_reverse	20	54	43	26	48	36	68	18	58	25
GTTTTCCTAAGGATTC	ref_4832_reverse	5	8	6	5	8	4	6	4	3	3
GGACCCGTCCATTAAT	ref_4832_reverse	15	20	32	20	25	10	28	18	24	17
CTTGCGGAAGTTTGTC	ref_4832_reverse	88	151	121	104	160	106	139	101	120	93
ATGCAATGGTGCTCAC	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
AATGGTCTTAGTCCCG	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGGCGAGTTATTC	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GGATTCCTATGTCCAC	ref_4832_reverse	6	15	14	11	13	6	10	7	14	3
AGTTCAAGTGTCGTGT	ref_4832_reverse	14	31	20	19	14	16	28	15	26	14
TTCACTAGCATCTATG	ref_4832_reverse	8	29	18	17	21	10	33	19	22	15
TGTATGCAAACTCACT	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
TATACTTGCCACGCGG	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
GCTATTATCGTTGTTT	ref_4832_reverse	12	26	22	23	21	15	21	28	30	14
GAGACGGGGCGTTACG	ref_4832_reverse	47	68	79	56	87	59	84	56	94	54
GGTAACTTCTGCAATG	ref_4832_reverse	17	39	23	25	39	14	30	26	39	19
GAATAATAACCCCGTG	ref_4832_reverse	4	2	4	6	5	5	7	5	5	5
GCTAGCTGATTTAACG	ref_4832_reverse	0	0	0	0	0	0	0	0	0	0
CTGATACTCGTTTCCC	ref_4832_reverse	11	21	19	17	27	16	20	11	26	19
AAGGTGTTTATGTGCT	ref_4832_reverse	63	125	87	70	122	70	137	68	155	60
TCTAGGGATTCGGTAA	ref_4832_reverse	5	9	9	11	9	10	14	7	15	7
GTCTCTGTGCTGTACA	alt_5181_reverse	10	23	10	16	17	10	14	7	11	10
ACTTTGTTTTCATAGT	alt_5181_reverse	68	83	71	61	69	59	86	59	82	44
GCGCCTAGATTTGCCA	alt_5181_reverse	26	30	34	40	27	29	28	29	32	29
TTGGCGTGATCACGAT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCGTACCGAACGC	alt_5181_reverse	48	43	49	33	46	40	48	48	58	31
CCATGCAATTTCGCTT	alt_5181_reverse	6	4	2	3	3	4	7	5	7	2
GCATTTTGCAGTTCAC	alt_5181_reverse	21	19	35	18	41	29	39	21	41	24
TAGTCCACCAACCTGC	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
ATGCACCGCCATGGTG	alt_5181_reverse	31	56	47	38	47	31	45	36	37	42
CGAATAGAGCCCATGA	alt_5181_reverse	4	15	16	23	21	13	10	12	13	16
GACTGTCGGAGTAACT	alt_5181_reverse	22	25	16	28	27	17	24	14	32	13
TAAGTCCCTCTCTTCA	alt_5181_reverse	38	58	53	52	55	33	49	37	32	48
TTTCTAATTCTCACAC	alt_5181_reverse	28	40	62	45	42	44	47	39	55	31
GTTTCCCCTGGTGGGT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTTCCGACCAGAT	alt_5181_reverse	8	7	9	3	9	6	6	6	7	7
TTAAGCCCTGTATGGA	alt_5181_reverse	58	39	64	72	58	62	74	62	82	61
TGGGACGTTGTTATAC	alt_5181_reverse	14	14	22	27	18	21	29	12	30	17
TTTTGTATTCGGGTTC	alt_5181_reverse	96	107	116	83	114	74	112	97	118	78
TATCCGTAATGGTACA	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
AATCCTTCGTTCTGAT	alt_5181_reverse	3	7	6	10	8	7	6	4	7	7
ATATTTGTGCCCCCGC	alt_5181_reverse	54	37	36	62	49	48	33	49	40	56
GCCCGACTTTTACGTC	alt_5181_reverse	35	45	50	33	39	29	34	34	44	44
TCTTCAAGTCGGGAGG	alt_5181_reverse	37	60	72	44	62	66	55	53	59	56
AGTAACGTCCAGTGAC	alt_5181_reverse	11	14	14	10	7	7	17	12	13	8
CTGTTGTCCGTTTGAG	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTTCCCGGCCACT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTATCATCGGCTC	alt_5181_reverse	34	64	62	29	45	41	56	39	50	40
GTTCCCCCTGGTGGGT	alt_5181_reverse	27	36	40	33	38	32	32	19	31	23
ATCTCCAGCTTATTCC	alt_5181_reverse	19	25	16	16	25	17	28	20	25	13
GTTAATTGCATTATTG	alt_5181_reverse	42	67	61	51	48	42	55	33	49	35
CTGATGAGATATGGGC	alt_5181_reverse	15	19	26	11	7	18	15	17	13	14
CACGCCGCTATTTGCT	alt_5181_reverse	1	2	5	1	5	3	2	1	6	2
TTAGAGCCGTGACCTT	alt_5181_reverse	19	22	20	21	10	16	24	14	17	7
ACTGCTGGCTAAAGTT	alt_5181_reverse	218	212	210	204	246	205	214	180	216	202
CCGTGGGGAAGTTTCT	alt_5181_reverse	19	21	30	18	28	12	18	17	23	5
GGCATCTCCCGGGACA	alt_5181_reverse	33	34	67	39	44	33	47	33	46	32
TATCGCACCATTGTAG	alt_5181_reverse	35	41	58	47	48	33	43	36	60	33
CAGCGCTCGCGTAATA	alt_5181_reverse	6	5	2	4	6	2	3	5	2	2
TTTGACGGAGCGATCG	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
AGCCATGTCATACGTC	alt_5181_reverse	5	4	8	9	4	4	10	6	7	3
TACCTTTAGCAGTCGT	alt_5181_reverse	20	11	22	22	19	16	25	13	20	16
GCTTTGGGGTCGCCAC	alt_5181_reverse	18	17	18	12	16	17	11	21	12	25
GCTTACTGCACAAGTT	alt_5181_reverse	4	11	6	4	5	4	5	8	6	8
CTTTCGTATGTCCGAT	alt_5181_reverse	4	4	1	1	5	0	2	3	4	5
CAGTCCTTAGGGCTAA	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTCGATTTTGTCC	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
GCGAATTGCTAATTGT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCTGTTGGTCCGT	alt_5181_reverse	42	35	46	21	30	34	44	20	44	29
CCATAGACTTCTTTGT	alt_5181_reverse	45	30	22	27	40	22	40	34	45	14
ATTAAGATTTAAACTC	alt_5181_reverse	55	56	58	54	58	46	59	42	61	47
CGTCACATATATTGTT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTTTGTCAATATC	alt_5181_reverse	22	30	22	26	24	17	24	20	18	20
GCCCTGTGCTGGTAAG	alt_5181_reverse	27	37	57	39	33	26	42	20	34	23
TGGATGGCATTTGATG	alt_5181_reverse	8	9	6	6	9	5	11	6	13	5
CGCGGAATCTACCCTG	alt_5181_reverse	42	38	50	41	38	32	37	39	50	42
GGTTTCATCACCAGTT	alt_5181_reverse	11	18	17	18	9	15	21	12	22	18
ATTTTATTTGATTGTT	alt_5181_reverse	218	209	246	175	248	191	212	208	205	170
TCCGCCGGGGGCTAGG	alt_5181_reverse	39	50	43	42	49	37	46	38	64	44
TTTCTGCTTTTAACCT	alt_5181_reverse	18	15	15	25	14	20	21	22	12	8
GTATTCCGAGACGGGT	alt_5181_reverse	123	103	126	107	113	108	133	119	141	125
ATCACGGTTAGACAAG	alt_5181_reverse	3	4	4	5	1	2	1	2	0	3
ATATGGATCGAGGTTC	alt_5181_reverse	82	87	88	66	55	56	72	54	100	65
AATCCCCAGGGGCTTT	alt_5181_reverse	23	19	20	28	21	25	16	19	31	16
GGTTTCAGGCTTCTTT	alt_5181_reverse	17	21	20	19	16	30	16	14	19	19
TCCCCGCTGAGGCTTT	alt_5181_reverse	69	124	95	106	103	105	94	83	109	71
CCTGTGTTTTGGTTTT	alt_5181_reverse	6	10	6	12	14	6	18	1	12	2
CTGTGCTGTTCCGTCT	alt_5181_reverse	33	19	47	33	32	35	25	15	23	23
TGCTATTGGGCCAGCT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
ACTGAGTCTAAGAGTG	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
AACTTACGCACGCTTG	alt_5181_reverse	20	35	26	16	20	13	35	13	23	16
CTATTGGGCACCGCTC	alt_5181_reverse	44	53	68	52	48	50	52	39	56	37
TACTTAACTTGTCGGA	alt_5181_reverse	82	82	94	71	80	71	71	67	81	64
ACTTCACCGAAACGGT	alt_5181_reverse	12	20	24	36	18	17	23	14	16	11
TGAATTGGCCAGGGGC	alt_5181_reverse	26	48	45	23	28	37	24	25	49	25
AAATTTTATCACAACA	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCCGTTACGACTT	alt_5181_reverse	53	51	68	47	54	37	64	34	59	47
GCCTCAAACGGCTGAT	alt_5181_reverse	15	25	33	23	34	26	39	25	28	28
TCCATTATCTTCGTAT	alt_5181_reverse	62	46	95	57	54	65	66	66	62	49
GAGAGCCGAATGGTCT	alt_5181_reverse	13	6	17	18	15	9	12	14	16	13
AGTACTTGATACTAAG	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGCGTATATTGT	alt_5181_reverse	13	25	17	17	8	22	24	9	18	22
TAGCTCTAGAACAGTT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
CAAATATGTGCATCTA	alt_5181_reverse	9	13	19	11	15	19	13	8	14	7
TGTGCTTCTTTAGATT	alt_5181_reverse	0	0	0	0	0	0	0	0	0	0
TATACGCAGTTACCCG	alt_5181_reverse	8	5	7	8	9	6	8	8	3	7
TTTATTTGTGTCGCTT	alt_5181_reverse	51	59	75	47	49	64	81	64	72	43
GTGTCGTATAGGGGCA	alt_5181_reverse	32	27	31	28	22	24	35	27	33	24
CTTGCGGATACGCTAA	alt_5181_reverse	13	19	27	20	17	18	27	15	27	14
ACTCGGCTGGCTTGAT	alt_5181_reverse	9	19	11	11	8	12	8	8	12	8
GCTGTGACGCTGTTTG	alt_5181_reverse	37	19	53	34	32	43	27	30	49	39
TCCCCTTCACCATCGT	alt_5181_reverse	0	16	1	4	10	7	20	4	11	1
AGAACTCGACTCCAGT	alt_5181_reverse	74	85	83	74	82	71	98	59	88	71
GCTTGCAGCGGGCCCT	ref_266_negative	9	13	12	8	10	4	17	7	7	14
GCAGCTTCAATGTGCG	ref_266_negative	5	4	4	10	4	5	14	2	5	2
CGTACATTGTGGGCTG	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GTCATTAACCTTTTTT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GGCCAAAGACGGGTCT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GAGTGGCCTTTTAATT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TCCCCCGGCCTGGCTA	ref_266_negative	2	5	7	4	6	2	7	2	13	2
CCTTGAATCATTATAC	ref_266_negative	47	70	41	45	68	48	86	50	88	49
GGCTAGCATCTCCAGC	ref_266_negative	1	2	0	0	0	0	1	0	1	0
ATGTGAGTAATCCTTG	ref_266_negative	22	49	27	31	53	32	52	37	57	30
TTCCATTTCCACTCAA	ref_266_negative	9	10	13	12	21	7	15	3	22	3
GCGCGAATTTGGGCGA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TCACAGCAGTTTTTTG	ref_266_negative	0	0	0	0	0	0	0	0	0	0
AACCCGGCCAAAACAT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GCAAGTCCGGTCCCCA	ref_266_negative	3	4	3	3	6	5	6	5	5	2
TTCGTTACAGGGATTA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TAACACATGATCAGTC	ref_266_negative	40	70	36	30	53	42	65	31	80	38
TGTTGAAGTCCAATGC	ref_266_negative	14	36	11	10	16	16	35	16	31	8
TAATTATGCCCGGTCA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GTCTGTCACAGCTTTC	ref_266_negative	1	2	0	0	1	0	1	0	0	0
GGCTGCCTATTGTAGG	ref_266_negative	2	14	8	1	11	7	11	5	15	7
TTCTCGAGTCAGGGGC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GCGCAAGTAATAACGA	ref_266_negative	46	49	40	38	63	33	83	37	71	35
AACTGTTTCCTGATTA	ref_266_negative	5	12	8	9	15	7	9	6	5	6
TTCACTGAGAGTATTC	ref_266_negative	9	8	13	13	19	14	20	6	23	8
GACCACGAATTTCTGC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
CGTGATTTTTTCTTTG	ref_266_negative	24	41	36	33	24	35	30	21	48	26
TCGCATTTCGGGTCGA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TTCTAAGATTCATTGA	ref_266_negative	12	16	7	6	15	8	19	9	20	5
GGTACTTGCAGTTCGG	alt_266_negative	4	7	3	1	6	1	7	1	12	1
ACCCCACACTGCTCCC	ref_266_negative	4	6	2	1	1	0	3	1	4	1
CCCTGGCGCCTCTGCC	ref_266_negative	18	50	29	10	61	12	46	8	72	8
ATGCTTACGGTCTAGA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
ATCTACTAGAGTTCGG	ref_266_negative	17	21	19	16	24	19	23	14	28	9
AGGCGCTGTTTGGTGA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GTTCCAATTTGTCAAC	ref_266_negative	25	36	31	21	29	12	37	15	36	16
ATCCTCACGGCGCTGG	ref_266_negative	111	153	138	120	163	101	199	115	180	121
GCCTAGCAGTGTTCTC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
CCGAGTCAACTACACA	ref_266_negative	7	47	15	10	32	11	40	5	36	6
CGGTGCGCTGATTCCC	ref_266_negative	20	17	25	13	29	19	29	18	33	15
GCCCTTGTCATGCTGT	ref_266_negative	6	8	4	8	10	2	6	4	7	8
ACGTGTACAGGCCTTT	ref_266_negative	26	44	32	20	34	21	36	25	27	20
TACTGAATGCGTATTT	ref_266_negative	24	33	20	18	22	22	41	18	40	18
TAGACGCCCAGTACTC	ref_266_negative	20	50	15	24	45	13	32	17	43	30
GGCTGTGCGAGATTCT	ref_266_negative	1	4	0	1	0	0	2	2	2	0
GGCTCTAACATCAGCG	ref_266_negative	64	102	72	63	103	56	122	50	117	54
GCCTAGCAGTGTTCTT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TGTGTCTAGTGCTGGG	ref_266_negative	1	4	6	2	5	2	10	5	3	1
GGCTTGCTACCCGGCT	ref_266_negative	7	14	13	13	22	9	27	9	13	10
AAGTAAAAGATTCGTT	ref_266_negative	12	12	8	12	7	12	19	9	20	6
CCAACCTCGTAAGCAC	ref_266_negative	7	22	8	6	25	6	24	5	30	5
ACGTCCAAGTAAGTCT	ref_266_negative	5	4	8	5	2	8	8	7	8	8
TTACGAAGAGATGGCG	ref_266_negative	30	46	40	20	33	31	35	23	49	32
TCAGTACCTGCCAGGC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TGTGGGTAGGAGTGCG	ref_266_negative	23	47	23	25	45	29	46	23	29	18
CCTTCTTTTGCTTCTG	ref_266_negative	0	0	0	0	0	0	0	0	0	0
ATTTTGTTGTCCAGGG	ref_266_negative	4	7	6	6	9	4	14	9	15	7
GTACCGACGGATTGGA	ref_266_negative	20	20	15	18	27	19	38	20	34	7
ATCATATGATCAGGTA	ref_266_negative	59	95	62	51	75	53	77	74	89	52
TCGCTGTCAAGGCGAT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TCTTTCATGTAGCTAG	ref_266_negative	0	0	0	0	0	0	0	0	0	0
AAAAGTCTTTTTATGT	ref_266_negative	0	0	0	0	0	0	0	0	1	0
GCACACCGCAAAGTGT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
ACTCTTACGGATTGAA	ref_266_negative	21	44	36	22	50	9	33	31	36	27
TTTCACTTGATTCGCT	ref_266_negative	57	73	65	50	83	34	80	46	74	28
TGGCCAAGGCAGCGTT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TGCCAAGCTCAGCTTT	ref_266_negative	0	1	0	0	0	0	0	0	1	0
TCGCATATGGCCTTGT	ref_266_negative	4	17	12	5	4	4	11	4	13	6
TCCCTACGGCCCAGAG	ref_266_negative	22	62	15	15	77	21	63	25	75	25
CTTTACTGTGCCGTGA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
CGTACTTCAAAATGAC	ref_266_negative	7	15	9	2	6	5	9	11	9	6
ATTTGCTCTCTATCAA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
ACTACCGCCCAGGCAG	ref_266_negative	11	20	17	15	21	22	30	11	38	17
AACTGTTTCCTGATGC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GACATTAGCTAGATAC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
CCGAAGAATTGAAGTT	ref_266_negative	9	12	4	10	15	12	14	8	11	9
TGACTGTGCCGCAGTT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
CTTACAGCTTACATGC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TCAATGCTATCCTCTC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TGCACCGTAAACGGTC	ref_266_negative	12	25	12	11	18	13	21	10	15	11
GAGTATTTGTCCGGGC	ref_266_negative	0	0	0	0	0	0	0	0	0	0
GAATGGTAGGATCTAC	ref_266_negative	7	20	18	16	15	15	23	19	24	15
TGCCTTGCCTCAGTAT	ref_266_negative	15	32	28	16	27	12	22	11	32	13
GGCTTCACATTACCGT	ref_266_negative	9	32	26	13	40	21	35	21	25	25
GCTCCGAATCTTCGTG	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TTCAAGTGTCCTCCGA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
CTGTCATGTTTGTCTG	ref_266_negative	0	0	0	0	0	0	0	0	0	0
AGAGATCTTCACTTAA	ref_266_negative	78	128	93	85	145	68	127	67	140	64
AGTTCGTAATAATTTA	ref_266_negative	0	0	0	0	0	0	0	0	0	0
TCTTCTGGGGTCTGTA	ref_266_negative	11	14	11	9	19	6	12	10	21	11
CTATGCGCATCTCACT	ref_266_negative	0	0	0	0	0	0	0	0	0	0
AAACCCCACAATTTGA	ref_266_negative	12	17	12	13	18	9	12	6	24	14
CGTTATGGAATACAAT	ref_266_negative	4	6	4	2	3	7	3	1	4	1
TCCTGCCTCCTGGTAC	ref_266_negative	9	30	18	17	35	17	17	11	31	18
CTTGTGTACTGCGGAC	ref_266_negative	2	12	3	5	8	8	13	3	9	6
ACGTACTTCACTGTCG	ref_266_negative	0	0	0	0	0	0	0	0	0	0
CGTGTAGATTTTCATT	ref_266_negative	6	8	6	5	6	6	9	2	6	4
AAAGTAAGGAGTAGCG	ref_266_negative	28	59	29	24	34	30	49	21	50	17
CCTGCTCGTATATGTG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TGCTGTCTACGATTAG	alt_3478_RC	144	89	192	149	117	140	126	177	129	123
GCGCCGGGAGTATTTG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
CTGATGCAGTATACTG	alt_3478_RC	4	4	3	4	0	2	2	5	2	6
ATCGAGCTAGAATCGG	alt_3478_RC	19	12	32	30	25	18	26	29	16	18
TTGGTTGAGTATGCAA	alt_3478_RC	91	81	111	123	92	103	101	88	90	98
ACCGTATCTCAATTCG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TGTATGGACAGGGTTA	alt_3478_RC	246	187	290	276	212	245	197	239	219	224
CAAATCCACTGTATTA	alt_3478_RC	86	75	120	87	84	96	87	99	63	100
TTTGTTATTGAGGGCA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TAGACCATCCCACAGC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GAAGATCTTGGTGGAG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCCTTAATATCG	alt_3478_RC	19	14	19	21	18	18	13	13	17	12
TGGTCTACCGATGGCC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGCCATACATACGACC	alt_3478_RC	114	97	146	94	123	102	81	98	98	85
ACCGAATAGCACGAAA	alt_3478_RC	24	32	33	24	30	23	30	25	24	22
GCGTATTCGAGGGTCG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGTCCCCAGATCTTCT	alt_3478_RC	275	226	362	282	271	283	276	255	289	247
TCCACTACTGAACCAC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGCTTACATAGTTTTT	alt_3478_RC	146	100	167	144	126	112	121	119	118	117
GAGGCATGGATATATA	alt_3478_RC	70	46	90	70	39	60	47	67	59	50
GATTAAGTTGTATTCT	alt_3478_RC	42	15	48	31	13	41	27	33	27	32
TCAGGTCTGGAAAAGC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GTAATTGTAGATGTAT	alt_3478_RC	45	33	55	60	52	35	37	57	42	46
TACTGACATGCCCGGG	alt_3478_RC	30	25	29	40	23	30	32	32	19	27
TCACGAATCTAATACG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TTGATGTAACGATCTC	alt_3478_RC	63	46	73	56	36	59	48	65	46	47
TTTTTAGCTAGTTTGC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
CATGCGTTCTGGACCC	alt_3478_RC	19	38	36	21	25	21	49	14	38	24
GCTCCCTGGTTGGTAA	alt_3478_RC	4	5	9	13	14	10	13	14	5	8
CCACGGTCAGAATTCT	alt_3478_RC	11	10	16	10	15	11	8	9	18	7
TACTCTGATACGCTCT	alt_3478_RC	48	32	56	38	43	37	36	51	34	34
TTACGGCATCTTAATT	alt_3478_RC	65	31	67	53	56	68	59	39	64	44
CCATATTTACTCAAGG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AGCTCCTCTCTGAATC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AGCTCTTCTTCTGTTG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
ACATTTGACATTACGC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TGAGCCGGGATACGCG	alt_3478_RC	6	5	6	11	3	9	14	6	4	3
AGCTGTGTTATGTTTT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GTTTGAGAGCACCCAT	alt_3478_RC	9	7	7	6	5	1	6	3	5	5
TTTATGTTTAAGTATG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GTTCACGTGTGGATCT	alt_3478_RC	32	27	44	36	28	30	26	16	26	23
TTTCTTGCTTAAGGAT	alt_3478_RC	47	28	38	32	39	37	37	30	33	28
CCTAAGCGTTAATCAA	alt_3478_RC	26	20	31	26	24	13	19	18	24	5
AATATTCCAATCTCTC	alt_3478_RC	14	4	16	8	11	16	11	10	10	10
TCTTTAGTCGCAACTT	alt_3478_RC	12	11	18	15	11	8	20	9	7	3
GTCACAGGTTGGGTGC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TTTATAGTGGTTTTTT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GACTTTCCATCTTTCG	alt_3478_RC	34	14	18	13	10	18	12	12	15	17
CCATTACCTGTGTCAT	alt_3478_RC	46	119	45	50	123	41	117	29	122	28
ATGAAACCAGTCCCTT	alt_3478_RC	17	16	32	29	17	17	21	18	9	21
CGACCCCCCATTGTGA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GTCGTGAACCGCAAGT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TCTGTACTACGGTTCC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGTCTAACCTGGCCGC	alt_3478_RC	25	19	22	16	16	21	17	19	31	19
TATTAAGACAATCAAC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GCAGAACCATGTTACC	alt_3478_RC	5	4	8	8	4	5	1	2	7	6
CCTTATGTCTTGGAAT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TTACAAGTTACTCTAG	alt_3478_RC	21	20	16	11	13	14	13	18	10	10
GTTCCCAAGACCGGGC	alt_3478_RC	14	7	7	9	12	3	6	3	5	7
TCACTAGAGGGCCCTC	alt_3478_RC	10	10	14	21	10	14	9	23	19	21
TATTGTCATATTTTCT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AACTCTTACAACCTTA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TTTGTAAATCTTGGAA	alt_3478_RC	15	11	20	8	9	16	12	22	14	14
AGCGGTTCATTTCGAT	alt_3478_RC	93	73	135	138	94	121	85	91	107	95
GCTGTTGTTTCGGATT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TCACATACGTGACTCA	alt_3478_RC	97	75	82	85	76	87	74	78	67	54
TGGCTTTAGCAGGAGT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GACGGACCGGCACATC	alt_3478_RC	3	13	2	3	11	6	13	4	9	1
CATTGTTTGTATTTAC	alt_3478_RC	4	2	5	3	1	4	3	4	2	2
ATGTACCTGTCGAACT	alt_3478_RC	11	16	11	17	12	14	11	5	10	17
GCGCCGGTTTATGCTC	alt_3478_RC	6	7	9	6	7	1	9	4	7	4
GCCGGCAATGAATCCA	alt_3478_RC	21	13	41	28	23	26	28	21	25	18
ACGAATGTCTCGTTTT	alt_3478_RC	66	52	65	56	41	59	50	52	42	65
TATCTCCAAGCGTAGT	alt_3478_RC	92	54	88	78	61	71	58	61	70	60
GCTCTCATTTCTGCCT	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GTACTGTGTTAAGCTG	alt_3478_RC	72	44	80	53	50	65	45	54	63	54
AACGTTAAATATACCG	alt_3478_RC	8	7	14	6	6	5	5	7	6	14
GGTGCGCATCTAACTC	alt_3478_RC	27	23	34	44	35	32	28	32	29	21
GTTGCCGCTATTCTTG	alt_3478_RC	26	11	33	40	28	32	17	20	28	27
CCATAATCTTTACCTT	alt_3478_RC	68	46	56	67	50	59	66	56	50	42
TTCGGTCATTATAGTT	alt_3478_RC	34	23	42	40	24	36	33	29	35	36
TACATCGTGCCTTGCG	alt_3478_RC	16	27	28	22	10	12	27	13	29	21
TCTAGTTCTTAAAAGG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AAGGCTTGGCAAGAGT	alt_3478_RC	12	6	2	5	6	6	6	10	6	4
AAGTTCCGCTTGTCAC	alt_3478_RC	196	163	210	196	149	190	168	170	171	159
CGTACCCAAAGAGGTG	alt_3478_RC	0	0	1	0	0	0	0	2	1	1
GGACGTCAGTTTCAAA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGTATCTACCCAGCAC	alt_3478_RC	19	12	30	22	4	21	26	22	23	17
AAGTATCTGTCTTTCG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
ACGACCGTTTGATCGC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AGGAATCTATGTTGGC	alt_3478_RC	24	25	28	26	32	41	23	18	25	19
TTTATTACCGATCATG	alt_3478_RC	84	51	101	87	59	79	63	76	54	72
AGGTACTGCCTGTAAC	alt_3478_RC	20	15	34	26	18	18	17	23	33	16
TTCAGGAACAGATTTA	alt_3478_RC	19	17	17	13	10	18	17	18	22	19
CCTAGTGCAGCACGCG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
CTACCCGGCTAAATGG	alt_3478_RC	38	37	52	61	46	36	50	36	47	33
GCGTGTTTTGCGGCTC	alt_3478_RC	17	10	20	14	18	14	18	20	13	19
CACATACGCACGTTAC	alt_3478_RC	11	13	16	18	12	7	13	11	10	3
TGACGGATTTCCTGTC	alt_3478_RC	14	15	30	22	15	15	12	20	17	12
TGTTAGTGGCCCATTT	alt_3478_RC	20	19	13	21	21	16	11	31	19	24
CTAACTGGACGTATTG	alt_3478_RC	6	2	3	1	1	6	1	8	3	3
AATGGCCAAGCTGCAG	alt_3478_RC	63	47	80	60	40	59	56	50	64	70
GCAGTTGCTCCGGGTC	alt_3478_RC	8	6	16	20	10	8	12	5	11	11
TGTCCACTCCTTAAAG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
CTAATTTGGTCCGAAT	alt_3478_RC	36	53	51	44	40	39	51	40	59	35
GCACTCTCTTTTGATA	alt_3478_RC	4	4	4	7	9	4	4	6	3	9
GCATATATGACCCAGG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TCTGTCCTCTCTTTGC	alt_3478_RC	41	32	67	57	24	37	35	40	44	25
TTGGATCTTAAACCGG	alt_3478_RC	26	12	41	23	27	25	14	21	17	18
GGTTGCTTTGCGTGCC	alt_3478_RC	55	46	74	68	40	58	63	51	42	47
CGCTTCTTACACCAAC	alt_3478_RC	13	7	10	17	18	11	13	12	14	7
ACCTTAGTAACGAGAT	alt_3478_RC	45	48	53	64	49	54	47	53	39	58
TTTTTTTTAAGTTGTA	alt_3478_RC	10	17	27	28	24	20	11	18	16	14
TTCGTTCGCCTAGCTC	alt_3478_RC	4	8	7	9	11	6	10	2	5	8
CATTGTTCAAAATCTT	alt_3478_RC	99	82	110	102	81	113	90	110	107	94
GCCCCTCTTTCAGAGG	alt_3478_RC	94	58	96	102	69	64	61	86	92	97
CTCGTCCCCGTCAGTA	alt_3478_RC	2	29	2	1	24	3	25	2	28	1
CGCTTTGTGGCGTGGA	alt_3478_RC	4	16	23	29	9	7	18	12	25	14
ATCACGCCCAGAGCAC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TCACCTATACCGTGAC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GGCGTTATTAACTCAC	alt_3478_RC	24	14	27	33	17	15	19	26	20	20
ACAATAGCAGTTGTTT	alt_3478_RC	79	49	76	70	59	71	68	71	58	66
ACACCCGGCCATTCTA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AACCTGGGTCCGTTGA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AGATGCGTTCATGACT	alt_3478_RC	26	26	37	18	24	29	36	14	31	20
GGCCCCCTCCATGAGC	alt_3478_RC	39	21	35	25	19	18	17	36	31	19
CCTTCCGTATTATGTC	alt_3478_RC	153	112	160	133	117	168	116	153	150	142
CTGTTCTTCATCCGTC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AGCAGGGTGTTTCCAA	alt_3478_RC	0	1	3	1	3	1	3	3	3	1
TTCGGCGTGGATTCTG	alt_3478_RC	72	59	82	90	60	67	71	71	81	64
ACTACGTACGTGCACG	alt_3478_RC	30	23	49	34	32	26	39	30	38	35
GTACCTTTATGGATAC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GCTCTGAGACCTGTAA	alt_3478_RC	4	8	13	3	6	4	7	5	4	6
GATGGTGAAAGGCCCC	alt_3478_RC	7	4	11	14	5	6	8	9	10	8
CATTCAATGGCTACCT	alt_3478_RC	38	28	59	40	37	38	33	37	28	29
TTAATCTTTTCGCGCA	alt_3478_RC	7	20	11	10	16	4	14	6	13	6
GCCTAGTCGAAACTAT	alt_3478_RC	11	12	18	12	14	15	8	16	11	10
ATGGCGACTATTTCGG	alt_3478_RC	35	33	59	37	37	37	45	39	37	45
TCGTCTGGCTTCAGGA	alt_3478_RC	5	4	5	7	9	8	9	3	3	3
GTTTCGAGGAGGTAGT	alt_3478_RC	0	1	0	0	0	0	0	0	1	0
AGCAGTTTAGTTTGTG	alt_3478_RC	5	3	4	8	3	2	3	8	3	6
CCCTTTGGTGACCAAT	alt_3478_RC	70	62	113	110	65	66	70	89	79	81
GCACTTGTAGTTGTAT	alt_3478_RC	61	48	50	58	46	54	54	63	44	43
AGTTGGTGTTGATGTG	alt_3478_RC	73	46	89	64	53	67	51	74	49	52
CACGTGTGCATAGGGT	alt_3478_RC	17	16	16	21	19	32	26	28	22	16
GCCGCACGATTATTAC	alt_3478_RC	18	5	12	18	14	12	15	12	6	10
GCTCTGAAGCTTTGCA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
CTCTCTTAACATGCCG	alt_3478_RC	43	41	49	43	35	38	32	39	38	24
CGTTGCTTATTGCGCG	alt_3478_RC	356	335	490	408	353	393	360	361	382	335
CTGAGAACCTAATGTA	alt_3478_RC	37	23	40	37	26	32	32	24	47	27
GATGTCCATCTAGTAA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TTCCATACACATGTCC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
CGATACCCCTGTCAGA	alt_3478_RC	52	67	46	53	63	50	57	52	64	43
CCTCTGTCTGCCAAAG	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TAAGTGTCGCTTGGGC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GCCTGCATCAAAAACT	alt_3478_RC	74	87	80	77	68	85	58	82	59	74
CTCGACGCTTTCGTCA	alt_3478_RC	165	155	181	145	124	157	139	139	151	149
TGTTTCGCGCGGCAGA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
AGCGGTATGTATCAGC	alt_3478_RC	23	21	28	32	18	16	21	23	22	17
CTTCACAACTCTAGAA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TGCAGTCTGGATGAAA	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
CCACTTATGGTCATTG	alt_3478_RC	15	14	15	20	12	10	16	7	15	14
GCTATTAACTTAAATC	alt_3478_RC	47	31	68	68	32	50	38	55	35	51
TTTCCCCGGCTAACTC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
GCAACTCGTTGCTTTC	alt_3478_RC	14	16	25	17	10	16	16	14	15	19
AAGTAGCGCCTCTGGC	alt_3478_RC	13	6	18	12	10	9	6	14	7	10
TGGACGGCATGTCCGA	alt_3478_RC	11	6	9	11	8	5	9	6	10	4
GAAAGTGGTTTTCTAA	alt_3478_RC	92	77	120	89	95	87	73	73	91	76
CTTATAGATCTAATTG	alt_3478_RC	52	42	68	70	40	42	37	39	49	31
ATCCGCCAGTGACGGA	alt_3478_RC	42	26	58	44	28	51	41	48	33	28
GGAGGCCTTCTATTCG	alt_3478_RC	108	84	161	116	107	124	97	122	85	114
AATATGCTCATATGCC	alt_3478_RC	0	0	0	0	0	0	0	0	0	0
TCGCTTCATTGGCGGG	alt_5268_RC	6	12	12	9	10	8	13	7	8	6
GATTGGGCTGGGCGAA	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AGGCTCATGCTTGCTT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AGTGCTCGCGCCTGGT	alt_5268_RC	12	8	6	9	12	4	7	14	12	4
TTAATTTTAGGGGCTG	alt_5268_RC	13	21	23	18	19	19	19	24	19	12
AGTTTCTTGCTCACTC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
CCCACAAATCTATTCG	alt_5268_RC	92	126	123	111	109	103	139	105	151	99
GCTTGGGCACCACTTC	alt_5268_RC	13	20	12	11	12	16	19	17	21	12
TTTATGCGTTTAAAGC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GTTAGACTTTTAGGGT	alt_5268_RC	68	91	100	68	94	62	98	63	97	53
TTTCCGTCCTTCCTTT	alt_5268_RC	14	18	20	24	20	14	21	20	32	25
GTACGATCCCACTGGA	alt_5268_RC	17	22	7	13	15	11	13	16	16	11
CGGCTTGTCAAATTAC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TACATGGCTTTGTACT	alt_5268_RC	27	41	38	47	57	26	32	33	37	27
TTCCCGCCGATATAAC	alt_5268_RC	7	13	15	7	20	10	15	3	17	9
CCGGTATGTCCGCTCG	alt_5268_RC	305	291	335	273	294	314	368	284	389	245
TGCGCCTATCGACGAC	alt_5268_RC	11	6	6	4	5	0	14	5	5	5
TTTAGTACACCTCACC	alt_5268_RC	33	160	30	38	187	29	170	22	143	31
AGGAATCTAGGAGTTC	alt_5268_RC	8	4	6	1	7	9	12	8	9	3
CCTTTTGCGTGAGTGC	alt_5268_RC	354	560	482	393	579	368	598	363	680	338
GTTTATACTGCGTGCG	alt_5268_RC	18	21	13	18	17	18	23	18	22	9
CCTTGCGGCCAGCTGT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TGTGCAGCGCCGTCAA	alt_5268_RC	13	17	7	5	10	7	11	8	14	7
AATCAAGGCAGTCGAC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
ATTATTACTTCTGGTT	alt_5268_RC	48	72	48	49	54	46	63	50	60	37
GGACTCCGCCGGCAGA	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
CTGGCTCTTTTGGATC	alt_5268_RC	70	93	98	73	92	83	94	87	106	64
ATCGAATCTGTTAACG	alt_5268_RC	4	6	4	10	8	2	4	11	4	4
TCCCTCTAGAGGGCTT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GATCTATTGTGTTCCG	alt_5268_RC	25	26	21	27	31	11	25	23	30	14
GTTTCCTCAGTAGGGC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AATATGCGCGTCTAAT	alt_5268_RC	1	2	5	2	5	10	3	5	6	2
ATGGTGATTACGCAGT	alt_5268_RC	20	14	19	14	16	14	23	11	17	12
ATAGGTACATGGGTTA	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TTGCGGTCGTCCCCGA	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GGTTGGGTTGTTCATA	alt_5268_RC	2	10	0	2	11	1	11	1	22	2
TTTCTGACCAAGCTAG	alt_5268_RC	75	112	80	67	93	72	108	77	97	75
GTCAGCCCAGCGAGAG	alt_5268_RC	27	29	23	16	30	22	21	31	39	18
CGCGCGCTCCTCAATG	alt_5268_RC	93	126	128	97	114	104	121	80	125	74
TCTTGGACTTGAAAAG	alt_5268_RC	27	26	37	27	32	27	44	29	30	25
GGGACCTCGTGTCCGC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GCCAGCCGACGTAGAG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
CACGATAGACAATCGC	alt_5268_RC	65	87	110	94	96	76	121	50	99	54
AGCTTTCACCAGGTTG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AGTAACATGTTTTTGC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AATTATCAACAAAAAA	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
ATAACACTGAACTCCG	alt_5268_RC	20	30	27	16	15	18	23	19	21	17
GTCTCCTTAGCTGCTG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
CTTAACCTAATTTGGC	alt_5268_RC	11	24	20	18	22	16	20	12	28	9
TGCAGATTTTTCCAAC	alt_5268_RC	38	65	43	42	43	31	61	36	57	41
AAGCCTGCCAGGACTT	alt_5268_RC	12	8	6	5	9	5	8	2	4	2
AAAGACTGCTAATAAT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TTGCCCGCCGCTACTC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GCCAAAGAATATCACC	alt_5268_RC	32	58	43	33	47	42	62	34	53	39
ACTTTGCCGAGTGTTT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
CTCTACGTACTTCGCT	alt_5268_RC	30	24	18	14	37	31	39	21	28	20
TTCCTGGTTCCTATAG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GGTATTCCCACACACA	alt_5268_RC	5	6	16	9	11	7	11	5	14	8
TGTGGAGTCCGTCCAA	alt_5268_RC	50	61	90	53	62	48	54	46	73	59
ACATCTACTAGACAAT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AGTGCGGCGGCGCGTC	alt_5268_RC	4	5	3	5	5	1	4	4	2	0
TGCCAAGTTATACCGG	alt_5268_RC	7	13	9	13	11	8	10	5	8	4
TATTAATACCTTTGTA	alt_5268_RC	38	34	29	32	30	22	47	25	25	19
TAATGTTTGGGGATGA	alt_5268_RC	31	41	24	47	48	41	35	31	30	25
TACCTCAATAAACCTG	alt_5268_RC	3	4	2	7	5	4	2	2	3	6
CGGATGCGGTTAATGT	alt_5268_RC	37	45	41	29	41	36	48	33	41	29
CTGTTACTATTTTATC	alt_5268_RC	2	17	9	7	20	10	17	19	15	14
AAAATTATTATGGCAC	alt_5268_RC	27	24	15	25	20	7	22	21	22	13
CCACACTTAGGGATTG	alt_5268_RC	38	46	46	65	66	55	57	31	53	55
GCCTAGTGCAGCTGTA	alt_5268_RC	44	55	45	33	59	35	45	32	48	36
CCTTTCGCGTGAGTGC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GTTATAGGTGCATACC	alt_5268_RC	99	127	122	94	140	88	137	95	147	70
TCGATAATTACCGTCG	alt_5268_RC	187	218	188	182	219	169	203	177	205	158
ACTGTATGCGTCTTAT	alt_5268_RC	11	7	9	3	7	3	11	7	10	1
CAGAGGGAAGGTGGGT	alt_5268_RC	25	33	35	47	36	22	38	29	32	24
ATATGCGCGGATCTTT	alt_5268_RC	57	52	47	58	58	40	65	55	57	48
CTTTTAACTGGTTGTC	alt_5268_RC	198	234	265	202	261	162	273	174	270	174
GTAGATTATATTCGTA	alt_5268_RC	33	36	63	30	36	36	34	29	34	18
TAAGCGTGCTTCGGCG	alt_5268_RC	7	9	13	8	10	6	5	7	17	10
GTCGTATCCTAGTATA	alt_5268_RC	7	7	2	4	7	7	4	7	9	8
ATGTTGCTTGCGGCTC	alt_5268_RC	191	215	215	198	194	180	245	162	262	167
CAAGTCAATGCTGCGA	alt_5268_RC	27	33	38	31	36	23	38	25	38	28
GAGAAGCTATAGCTCT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AGGGGTAATCTGACTT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GGTTTAGCGTTTTTCG	alt_5268_RC	35	68	44	42	61	48	61	42	57	38
GGGAAATACCCGTACT	alt_5268_RC	22	32	24	25	31	28	50	12	21	12
GAGGGGGAATGCATTC	alt_5268_RC	0	2	1	0	2	0	3	3	3	0
TCGGTCAACATGCCGG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AAGCTCTTGTATATCT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TTGTGTCACCATCAAT	alt_5268_RC	43	51	56	52	64	53	66	31	59	28
TGCTAAATTCCGTATG	alt_5268_RC	11	12	14	10	13	12	12	11	12	6
TAGAGTGAATATCAGT	alt_5268_RC	15	13	13	9	17	20	15	9	16	11
ATATATATCATTGTTC	alt_5268_RC	30	37	53	29	39	33	47	27	48	29
TCCCTAGCGGCATCAT	alt_5268_RC	37	28	35	30	39	22	29	21	33	22
CCCCCGCCTACCGTAC	alt_5268_RC	20	42	26	19	44	20	64	27	54	21
GGGGATTTTTCGAACC	alt_5268_RC	25	44	38	46	43	38	43	47	46	35
AAGGCCATCTAGTTCT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GGGCACTTCCAGTTTC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TCGGTACAAATCCCGT	alt_5268_RC	20	20	14	13	23	14	22	15	9	9
CGGTACAAGCAATTAA	alt_5268_RC	11	12	10	11	14	7	12	13	12	11
CGATAGAACTTTATGA	alt_5268_RC	41	43	39	34	67	40	48	41	58	28
TACACCCCCCTGTGCG	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GGCTGCTTACAGGAAA	alt_5268_RC	157	157	177	160	174	138	164	126	164	118
CCTACGCCTAGTACTC	alt_5268_RC	35	54	40	31	56	41	52	25	61	41
TGCCAAATGGGACGTT	alt_5268_RC	28	23	28	23	33	18	32	15	34	22
GCGACAATGCGTTAAC	alt_5268_RC	63	70	61	82	71	59	96	49	89	47
TTTTCTTGCATCCCTC	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GTCCCTCTGATTGGGT	alt_5268_RC	57	83	79	61	79	62	75	50	93	60
ATGATATCACACAAGA	alt_5268_RC	15	30	25	14	16	15	19	21	22	11
TCATTCTGAATGAACC	alt_5268_RC	13	18	25	21	24	16	29	11	25	14
AATATGGGCTGTTTGA	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
AGGCACATGCTTGCTT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGATATTTAGGT	alt_5268_RC	187	243	263	203	276	202	237	182	251	192
CCGGACATTTATATCT	alt_5268_RC	0	0	0	0	0	0	0	0	0	0
GCCCCATGCTCGCTGT	alt_5268_RC	75	74	97	67	79	74	84	65	87	82
TGTCGTACGCCTGACT	alt_5268_RC	22	28	21	24	24	24	21	22	30	15
TAACTCATGCCTTTAC	alt_5268_RC	46	44	54	69	43	55	49	37	64	29
GTGATGATGCCCACCT	ref_3878_reverse	24	40	33	13	51	26	54	16	54	24
ACTGCCCCCCGGTGCT	ref_3878_reverse	2	14	5	1	19	3	28	3	22	1
AGCATTACTCGTCTTC	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
CTACCGCATGTGTGCC	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
GGTATATATTCAAGTG	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCTACCATTAGTT	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
ACCCACATCTAATTAA	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTCAGTCCTTCA	ref_3878_reverse	38	48	44	35	57	15	61	24	53	36
TGATAGCCCGACGTCA	ref_3878_reverse	25	46	28	23	25	24	35	15	44	13
TATGGTTATGTAATAG	ref_3878_reverse	54	99	40	42	74	37	81	36	64	40
ATTGTACTGTTTTATA	ref_3878_reverse	18	41	17	16	36	16	34	16	36	20
TTTAGTTCAAGAACTA	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTCGGTGTTTTAT	ref_3878_reverse	5	11	4	12	11	2	11	2	10	3
TGATCATCGAGTCGAT	ref_3878_reverse	11	17	7	7	25	11	18	14	11	6
TAATAGCCACAAGGGC	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
TATAGCATGGGCCACG	ref_3878_reverse	30	31	33	17	37	23	28	28	39	15
CTACACTTTCCTCGAG	ref_3878_reverse	11	22	14	8	27	8	21	11	39	10
TTTGAGGGAGTTGGGG	ref_3878_reverse	28	59	35	31	43	31	44	35	41	15
CTATCCGTCGAGTACC	ref_3878_reverse	4	18	0	4	18	2	16	5	20	4
TCATGTCAAACCGCCG	ref_3878_reverse	5	12	6	15	20	1	11	8	18	6
ATTCTCACGTGCCGGA	ref_3878_reverse	45	55	49	35	72	37	84	34	58	39
TCAATATCTTTGGATC	ref_3878_reverse	23	32	27	14	27	15	27	13	32	19
CGTGGGCACTAACGCG	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
ATGCAATAGCCATAGC	ref_3878_reverse	5	18	7	7	15	8	13	5	19	4
CTCGTGGTCTGCCCAA	alt_3878_reverse	23	19	12	12	29	16	33	12	32	12
TATAATGGGATTTACT	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
TAAAACTGCGTACACT	ref_3878_reverse	13	23	11	10	28	17	31	8	24	12
TCGTCTTCATCGCAGA	ref_3878_reverse	16	16	11	9	18	8	19	15	20	19
CAATGCACAGCGGTGG	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCGCCGCTTGAGT	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTAAAGCGGCATC	ref_3878_reverse	5	12	11	9	13	6	19	7	11	17
TAGCTGTTACAAGCCA	ref_3878_reverse	0	3	1	0	0	0	6	2	2	1
TATTGCATTCACGTGT	ref_3878_reverse	31	57	38	35	45	24	40	28	69	25
GGAAGAGCCTCTCTTT	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGCGCCACCCAAC	alt_3878_reverse	11	56	22	21	28	18	47	20	43	20
AACGCGGTGAGTGGGT	ref_3878_reverse	13	8	7	6	14	4	9	3	10	7
CGGTTTGGGTGTCTCT	ref_3878_reverse	79	140	100	67	163	76	184	85	148	62
AAGCTATCGTAGCTAC	ref_3878_reverse	11	28	25	10	20	18	18	4	26	8
TTGCGTGAATCTGTGA	ref_3878_reverse	14	20	16	13	27	11	22	8	29	11
CTGATGTAATAAGTTG	ref_3878_reverse	6	13	5	3	12	2	7	4	16	5
TAAGACGAAATTGTCA	ref_3878_reverse	8	10	9	3	14	2	11	5	19	7
GAATACCATAGCCCCC	ref_3878_reverse	6	4	2	6	5	3	4	3	2	0
TTTGTACTATCTAGAA	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTTGACTTTGAAG	ref_3878_reverse	11	17	9	5	16	7	21	9	24	11
GAGGCTATGCCATCGT	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
GGCCATATTCCCTTGG	ref_3878_reverse	31	35	16	22	39	20	30	13	29	19
CTACTGGGACCCCTCA	ref_3878_reverse	1	2	6	3	4	1	8	3	5	3
CGTGCCCTATACGCCG	ref_3878_reverse	10	34	16	11	26	14	25	10	37	11
TGTTCAATGTCCGGGG	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCTATGTACCATG	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
AATATTGTGTTTTTCG	ref_3878_reverse	7	14	13	8	7	10	8	5	15	4
TGGTGGGCTGATTATG	ref_3878_reverse	35	61	40	37	82	51	68	27	90	45
ATTTGCGATTCCTGCT	ref_3878_reverse	18	18	13	7	13	5	10	9	12	6
CCGTACGGCCTGCATT	ref_3878_reverse	1	7	3	0	8	0	1	1	9	1
ACGAGGCTAAGCCATT	ref_3878_reverse	2	6	2	8	9	3	5	6	10	3
ATGGGATCAATCCATG	alt_3878_reverse	18	49	29	24	39	23	66	25	55	24
TGCCTCTCTAGAACAG	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGCATTTAGTCCC	ref_3878_reverse	11	26	12	12	18	8	27	3	20	9
TCGCCAGGTTAATTTC	ref_3878_reverse	10	31	26	21	36	17	35	20	24	16
TTCTACTACATTGCGA	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTGGGTATTAGG	ref_3878_reverse	16	26	15	12	20	14	23	9	27	5
TGCAGTCATGGGTTTA	ref_3878_reverse	9	11	13	8	22	4	10	10	18	9
CTTGGTGAAAAACGTC	ref_3878_reverse	28	47	34	30	72	14	56	34	62	25
TGTAAGTCTTTCAACC	ref_3878_reverse	1	2	1	1	1	0	0	0	1	0
ATGCTAGATTTCTCCC	ref_3878_reverse	2	23	1	1	31	1	31	3	33	0
CTTCTTTGCGTTCCTT	ref_3878_reverse	17	20	20	14	21	16	30	12	25	14
TGGCTGGTATAATCGC	ref_3878_reverse	10	11	13	1	7	4	15	4	13	7
CATTAGATGGTTGGGT	ref_3878_reverse	12	27	14	12	26	16	22	12	26	10
ATTACGCAAAGCGGGG	ref_3878_reverse	39	39	30	26	51	18	52	31	62	25
GCCACTTCATCTGTCA	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
AAATCTGTTCAAATCC	ref_3878_reverse	18	42	27	25	41	25	24	19	29	22
ATTGTTAACCTCGGAG	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
CCACGGGCACAGCTTT	ref_3878_reverse	55	115	63	69	129	58	116	61	120	45
GTTCCGTTGGTGATTT	ref_3878_reverse	5	14	5	2	6	12	7	11	3	4
CAAGGAACCGGTTAGT	ref_3878_reverse	12	30	15	10	28	14	34	15	30	8
TATATCTCGATAGTTT	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
TGATTAGTCCCGGTAC	ref_3878_reverse	1	6	6	1	9	4	14	2	6	2
TTCTATGTTAAGTCTC	ref_3878_reverse	19	42	28	23	41	28	46	19	39	20
TTGATTCAGTTGGATG	ref_3878_reverse	9	19	12	13	17	12	18	6	21	5
CACTTTTGGCCTATCA	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
GGGCATCTCTCGGAGG	ref_3878_reverse	5	9	6	5	8	2	6	8	9	4
GCTACCCCGTCCCAAA	ref_3878_reverse	3	6	2	2	3	2	4	2	1	2
GTGGCGCCCACGGTCC	ref_3878_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCCAAACTTTAAT	ref_3878_reverse	1	8	7	4	0	4	8	2	4	2
CTCGACGCGCGCCGTT	ref_3022_fdr	23	14	25	19	13	16	13	15	9	18
ATACCGCTATCCCTAC	ref_3022_fdr	47	19	42	50	21	25	26	37	21	21
CGTCTGTATTATTTTT	ref_3022_fdr	31	11	32	33	12	31	21	24	14	25
CGAGCCAAACTATTAG	ref_3022_fdr	60	52	66	60	69	87	42	50	66	48
GGCGCATTCGTTAGCC	ref_3022_fdr	383	167	529	420	180	435	204	405	215	312
ATGCTTCCAATAATGT	ref_3022_fdr	93	38	119	109	57	100	56	109	50	90
TTTGTTTGGGTCATAC	ref_3022_fdr	21	8	14	16	7	23	11	14	8	10
ACCGTCCTGGAGGCCA	ref_3022_fdr	60	35	81	86	39	56	28	57	27	65
GGACAGTTCCAGCTCG	ref_3022_fdr	193	82	216	205	85	184	97	161	92	137
GTGTGGTGAGCCCGAA	ref_3022_fdr	322	125	420	355	136	353	136	305	168	277
ATGGGGCAGTTCATGC	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCATTCGAGACTG	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
CCACGCGCCTTTTACA	ref_3022_fdr	26	17	25	24	8	32	15	32	14	23
GATTCTATTGTTCCGT	ref_3022_fdr	120	57	136	130	52	113	58	109	59	116
CGCGTATGCGCGGGTT	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGAGCTTCACCTT	alt_3022_fdr	77	30	88	71	41	71	48	72	47	66
ACACGAGTGCGTGACG	ref_3022_fdr	22	9	21	44	15	20	11	20	10	17
CTTGGTATTGTCTAGA	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
TTGACGTGGTTGAGTT	ref_3022_fdr	125	65	156	116	83	133	50	138	79	120
TTTTAGTTCAAGACGG	ref_3022_fdr	86	20	78	77	35	70	27	66	36	69
GAAGCCGGTGGGCAAT	ref_3022_fdr	10	8	7	6	16	11	15	6	22	9
ATTCTTGCTTATTAAT	ref_3022_fdr	157	57	198	168	69	169	62	157	73	154
ATACCATAGGGGGTAT	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTTATGCAAATA	alt_3022_fdr	294	124	307	322	152	260	144	242	141	216
TTATTCGTGATGCCGT	ref_3022_fdr	53	23	61	40	17	45	13	41	27	35
CCTATTTTGCGGCCAA	ref_3022_fdr	16	14	29	24	17	17	16	11	21	16
TTCGCCTCAGTGTTAC	ref_3022_fdr	330	170	382	350	162	307	163	302	210	276
GTCAGGTGCGTACCCT	ref_3022_fdr	5	3	4	3	4	3	1	9	0	3
GGGTGTGATCGGTCCT	ref_3022_fdr	121	66	183	183	92	140	106	147	108	144
ACCTAGTGAACCGGAT	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
CGTGACTACTCAAGGA	ref_3022_fdr	83	31	106	93	45	63	46	68	42	74
TTCTCGCTGTGTTATC	ref_3022_fdr	48	28	55	42	19	46	20	36	35	44
TGATCCCCTTTTTGTT	ref_3022_fdr	53	49	87	67	24	46	29	64	29	47
TTGGTTCAGGACATAA	ref_3022_fdr	153	89	174	159	85	144	71	132	78	111
TCCATGCATTGTTTCG	ref_3022_fdr	172	80	200	215	67	198	86	135	103	160
GAAAAAGTCTATGACG	ref_3022_fdr	52	40	36	30	32	32	36	32	50	43
GGATTACCTCAACCCA	ref_3022_fdr	71	40	83	83	35	68	29	65	37	70
AGAGCAGTATACTTCC	ref_3022_fdr	14	7	23	19	10	21	9	17	7	15
ATATGTTTTCTGTTAG	ref_3022_fdr	39	23	62	46	23	31	21	31	14	45
TTTAGCAAAGCATCGG	ref_3022_fdr	68	28	103	81	22	59	22	62	32	64
ACCTGTTTCGAAAGCG	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTAGGAAGGGCT	ref_3022_fdr	84	35	120	88	33	78	35	78	36	57
TCCGATTCGAAAAGTC	ref_3022_fdr	22	7	30	35	13	16	15	19	16	16
ACCTTGGTTAACGCGG	ref_3022_fdr	17	13	17	13	13	17	9	18	13	20
TGAATCAGGAGACACT	ref_3022_fdr	275	135	314	210	85	228	121	212	130	225
GTGACCTATTTTTCAG	ref_3022_fdr	41	28	53	51	24	52	28	37	34	43
GCTTCTGTATGTGTCA	ref_3022_fdr	57	19	49	47	14	42	14	48	24	45
GGTTTCATTAGTTTGA	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTATTCCAACGT	ref_3022_fdr	108	58	154	114	48	88	50	92	53	107
TCTGGCGGTATAGCTG	ref_3022_fdr	62	22	80	63	28	67	24	75	30	47
TTTGGTCAGTGCCCCA	ref_3022_fdr	31	22	39	39	13	32	17	25	19	23
ATTCAGCTGCGTCGAC	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
TACGATTTTGGTCCTG	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTGGTCTTAAAGA	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
TATCTGGCGATTATTC	ref_3022_fdr	41	19	61	44	21	39	18	44	15	33
AGTCCCACAAAAGGGG	ref_3022_fdr	17	4	40	29	19	26	8	26	10	22
AAGGATTACCTAGGCA	alt_3022_fdr	0	1	1	4	0	0	1	2	0	4
CATTATGACCGGAAAG	ref_3022_fdr	7	1	4	3	5	2	1	5	1	5
GAAATTTTTTCCTCGT	ref_3022_fdr	126	50	166	144	49	112	68	94	74	114
TTACCTTTAAGTGCCG	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
TTATCGGAGTAACATG	ref_3022_fdr	221	83	240	197	82	192	75	195	85	155
AGTTACGAGTTCATCG	ref_3022_fdr	118	69	186	145	62	132	78	144	61	123
TTATATTTGTCGCAAG	ref_3022_fdr	29	14	60	19	11	41	15	36	10	28
GGCAGCTGCGGAGGCT	ref_3022_fdr	173	85	211	200	61	165	58	161	66	154
CGTTATCCTGTCATGG	ref_3022_fdr	42	17	41	30	17	32	17	35	25	26
TAAGTCTCGTGCTTAC	ref_3022_fdr	20	11	34	22	18	24	9	18	20	19
TGTACACGATCTCGGC	ref_3022_fdr	75	50	92	78	47	73	39	79	57	66
ATTAGCGCATATCTCC	ref_3022_fdr	274	133	345	357	118	253	143	330	141	276
AGTTCGTGAATTTATG	ref_3022_fdr	40	12	54	42	12	41	11	40	23	31
TCTGGTTTTCCCTGTC	ref_3022_fdr	140	67	204	174	69	131	73	137	80	118
GTTAGGATCATGCAAT	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTGCGCTAACCG	ref_3022_fdr	111	52	140	121	46	108	67	91	46	101
TAGGAGCCCCCTGAGG	ref_3022_fdr	43	9	49	34	17	42	14	28	25	51
GAAGTGCCGGATATCT	ref_3022_fdr	126	78	160	133	52	119	69	105	73	116
CTAGAAAGATTCTTGG	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
GTCAGTATCTTACATT	ref_3022_fdr	28	21	44	32	18	36	14	40	16	31
AACCATGCGGGAATAT	ref_3022_fdr	21	6	17	23	5	19	9	17	7	10
ACTTTCGCATGTCAAC	ref_3022_fdr	68	32	101	79	36	63	47	71	35	76
GGTTATGGCGCGCTTT	ref_3022_fdr	78	32	125	123	39	90	33	96	38	79
ACCGTCCCTGTCTGTT	ref_3022_fdr	20	27	43	24	22	20	22	27	20	23
GCTAGGGTACCCAAAC	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCGGGTGCATACC	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTACCGGAGCTTC	ref_3022_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAACTTGAATGAT	ref_6042_new	184	60	170	164	74	138	84	149	91	139
TTGCTCGGTCGCCGTA	ref_6042_new	26	6	38	23	6	16	16	17	17	16
GACCATAGAATTTAAG	ref_6042_new	277	123	308	259	102	272	108	272	108	272
CTCCTTGTGTGCAAGC	ref_6042_new	74	69	155	101	70	89	68	108	82	75
CCATGGATCTACTCGT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CTGGAGTTATCTACAA	ref_6042_new	88	35	99	96	43	90	42	82	40	77
TGTCTACATCTTGCTC	ref_6042_new	424	165	521	491	141	358	149	399	161	391
GTTGCAGCAGTACTGG	ref_6042_new	40	19	30	43	22	35	20	37	17	34
TCCTTTGGATGCACAT	ref_6042_new	54	25	60	60	20	53	31	42	20	36
TGTACTTATACTGAAA	ref_6042_new	28	14	27	35	10	28	18	40	15	24
CGTGCTTACACATTTA	ref_6042_new	4	5	16	20	7	13	6	14	7	15
CTGCCCGTGGTCAGAC	ref_6042_new	53	27	77	77	29	56	21	67	21	53
CTTATCGGCATAGCTT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
AGGTAAGCTCCATAAG	ref_6042_new	92	39	100	83	40	84	46	87	37	85
AACACCTAACCTTGGT	ref_6042_new	51	15	63	65	22	33	26	46	18	54
CACGAACATATCCAAA	ref_6042_new	42	17	65	39	26	49	21	42	21	26
CTCCCTGACCTGGATC	ref_6042_new	59	88	69	53	105	60	76	44	90	60
TAACGAATACTTTGTA	ref_6042_new	35	13	47	34	13	22	10	39	14	21
AGAATGTGGTCTATCA	ref_6042_new	103	36	109	81	43	95	34	73	41	61
TCTTCGCTCTATATAG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GTTGCGCGTGATGGGC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCGCTTGTAGACGTCC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CGTCTTATCGTCATCA	ref_6042_new	26	14	25	29	7	22	6	20	9	21
TTTGACTCGATCCACT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GTAGCTCACGTCGGCT	ref_6042_new	174	128	231	228	106	176	111	197	101	155
ATCCTGCTTTCAGGAG	ref_6042_new	3	1	7	6	2	1	2	5	0	4
CCATGCTGCGTAGTAT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GTGCTTCCACTCTACC	ref_6042_new	91	55	119	97	57	95	55	102	50	74
CTTAATGATTCCCTAG	ref_6042_new	37	16	45	36	9	27	15	31	15	23
CCAACCACACTGTGCA	ref_6042_new	0	0	1	0	0	0	0	0	0	0
ACTTCGTGCGCTCGCG	ref_6042_new	5	7	13	15	11	10	12	14	7	8
TCAGTTACAATCGGAG	ref_6042_new	147	80	193	160	67	130	76	131	52	127
ATGACGTTTCTTCCTC	ref_6042_new	52	10	66	43	8	38	20	51	15	43
GACTCCATTCTAGTAT	ref_6042_new	21	7	25	21	5	13	6	13	10	11
ATCTTTCAGTTTTTTG	ref_6042_new	171	80	187	193	77	180	81	158	80	135
AGTACCGGCGTTGATC	ref_6042_new	26	6	32	24	14	22	7	14	17	24
TCAGTTTTCAAGATTC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCAGCAATAGCATTAT	ref_6042_new	60	13	71	53	22	50	21	53	29	53
TGTACGATAGACAATA	ref_6042_new	21	13	25	27	5	18	5	30	12	23
GACGTGCCGACTACAA	ref_6042_new	261	118	357	289	113	251	104	241	129	203
TCGCCACTACGCATCT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
AGCTAGTCTGGGTGGA	ref_6042_new	2	1	0	0	1	0	0	0	0	0
GTTCTGTTTCGAGTCG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CTATAGAACTTTGTTT	ref_6042_new	74	29	102	78	29	62	26	58	27	74
TGAGCTGGCGGATCAC	ref_6042_new	18	16	13	22	20	17	28	12	22	16
TCGATTTGTATCGGGC	ref_6042_new	31	18	40	31	15	22	20	34	11	29
ATGATGCACTTGTCAA	ref_6042_new	46	19	39	30	10	27	17	19	26	25
ATTGGAGCGAGCCTTC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCTACTACTATATCGT	ref_6042_new	5	4	5	11	3	10	1	7	1	11
ACGATTTCCGGTTGCG	ref_6042_new	52	35	82	62	31	57	22	64	24	50
GATGAAGTATCTTTGT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCTTGATTTTGTATTA	ref_6042_new	33	11	33	13	18	14	28	20	13	25
CTGCCATCAGATGTCA	ref_6042_new	35	50	41	39	54	42	49	44	80	33
GCCTCAAGATAGCCCG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCAAAGGAAAAGACTT	ref_6042_new	18	14	24	13	10	15	4	10	11	17
TTCTGTTAGAACAATT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GACATGAGAGTCAGGA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GTCTGGAGCTCCGTCG	ref_6042_new	22	10	25	24	4	13	15	16	11	22
TGCTAACTGAATTAAA	ref_6042_new	114	54	120	104	57	124	46	94	45	98
TTTCGTTATGGGCATG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
AAAATTATGCTCGATG	ref_6042_new	46	16	55	54	26	42	12	45	15	35
AAAGTGTTGATACTCG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
ACTGTATCAGCACCTA	ref_6042_new	11	22	5	7	29	3	29	6	20	7
CATCGGTGTTCGTTTT	ref_6042_new	23	16	46	18	15	18	3	18	9	22
GCATCAAAATCAGTTA	ref_6042_new	102	43	142	106	47	98	49	91	56	82
ATATTATGGTCCAGCC	ref_6042_new	52	23	80	71	19	49	21	53	31	44
TACCGCCGCGCTTAGG	ref_6042_new	123	47	152	98	75	103	67	108	61	103
GGGAGCGGGCGCTTCT	ref_6042_new	134	44	146	98	54	112	45	105	39	127
CTAGTCCTCTGTATTG	ref_6042_new	92	43	139	94	49	93	47	99	49	119
AGCCTTGTGCTTCTCC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCTGACAGCAATCAAG	ref_6042_new	23	13	22	34	8	32	6	26	22	14
TCGTTGAAACAGATCG	ref_6042_new	40	16	53	40	13	49	19	36	25	29
CCGGCTTGTGTTGAGT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
ACCGTTCTGATAGCCA	ref_6042_new	43	14	59	32	15	35	20	35	16	28
TCGATAAGGTTTCCGC	ref_6042_new	287	118	386	310	132	305	112	319	143	286
TGTGCCAGCGAGTAAG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TGTGTTTACGCGGAAT	ref_6042_new	161	87	194	150	89	140	90	146	84	139
TACCCTGTTTTCATAG	ref_6042_new	14	3	17	14	6	16	2	8	10	19
GAGTTCACGCTATTAC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCTCAGGGCCAGTAAC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GATACTGACTCGGACA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCCTTTGCGCGAGGCT	ref_6042_new	28	17	29	48	23	37	12	39	24	27
GATCAGTGCACCCGGT	ref_6042_new	176	67	189	178	52	186	75	156	60	139
GTGTGGTAGTTTAGGG	ref_6042_new	159	88	212	183	85	189	90	179	84	206
ACTGGTGGCGTCGCTA	ref_6042_new	234	68	310	244	91	265	89	269	74	212
TCGTTTCAGATACCTC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
ATACTCCCACATTCGG	ref_6042_new	21	25	30	31	28	27	14	24	25	23
CGCAATTTGCGCGGCA	ref_6042_new	208	96	266	239	92	225	94	204	91	206
TACGGTATGGGACCTC	ref_6042_new	51	27	52	52	24	54	27	46	23	39
TAACCGCTGGTTGAAG	ref_6042_new	17	7	27	21	11	15	8	18	6	13
CGATTCGCATGCGGAG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCGGTTCGCGAGCTAC	ref_6042_new	255	124	359	289	144	272	128	289	140	231
AGCTTTCCATCAGTGG	ref_6042_new	83	56	104	103	42	104	50	80	52	74
TAAGTTTATTTGGAAA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GCGTTTGCCACGTCCC	ref_6042_new	28	12	39	48	19	36	13	52	22	37
ATTTCCCTTTACTAAA	ref_6042_new	148	48	158	148	60	123	60	107	55	104
TTTTTTTTGCCCGCAG	ref_6042_new	36	17	58	30	20	35	26	44	16	29
CAACATATCAAAGCCC	ref_6042_new	14	6	14	17	15	19	6	12	3	13
CTCGTCACGCACGTCA	ref_6042_new	16	13	26	22	16	21	12	23	14	26
AAAATGATAGGCTGTC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TTACGATGCTATTAAC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCTAGGGCAGTGAACG	ref_6042_new	22	17	35	31	22	24	23	20	15	21
CGTATTAAAACTGAAT	ref_6042_new	19	8	12	13	7	15	10	12	6	8
GGATTCTTCCAGTAGA	ref_6042_new	178	83	267	208	86	182	91	165	89	179
CAGGTGTTAGCCCTTG	ref_6042_new	9	1	13	4	7	1	5	3	8	3
TCCTGGTTTTCATTTG	ref_6042_new	36	18	48	51	20	33	10	40	16	34
CTTTGACGTGTGTGTT	ref_6042_new	8	6	27	13	12	13	5	16	9	13
GAGAGGGTCGCGGCTT	ref_6042_new	10	3	23	12	1	9	3	8	13	15
TAAATCTAGGCAGTCC	ref_6042_new	48	31	72	53	20	48	27	37	21	60
CTAGTTCTCCCATACG	ref_6042_new	56	63	61	52	66	52	70	49	65	51
CCTTCCCAGAAAGGTC	ref_6042_new	31	7	12	25	17	23	11	12	13	18
CAACAAGTCCCACCGC	ref_6042_new	4	2	6	8	1	3	0	1	0	2
TCGGTATTACGGTACT	ref_6042_new	49	26	56	42	18	46	19	52	28	33
TACTCTCAACTCGGGC	ref_6042_new	97	55	99	84	49	81	49	72	54	70
CTTATCTGTTCTTCAG	ref_6042_new	18	7	21	24	9	18	8	16	7	13
TATTCCAGGCACCCCA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GGCACTCTTATCCGGC	ref_6042_new	195	94	261	200	90	172	81	211	109	155
CCTTAATTGGATCTCC	ref_6042_new	234	77	246	257	87	219	101	193	95	210
GCCGTAGGAGTATCCG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CTTAGTATGAGGGGGT	ref_6042_new	80	41	103	110	32	105	40	102	42	100
CGTAGGCTACTTCCCT	ref_6042_new	53	22	54	65	27	39	28	47	23	43
CAGTTCCGTTGGGTGC	ref_6042_new	444	424	640	485	451	398	420	415	460	421
CGCCCTGTGCCCTTAC	ref_6042_new	85	36	97	98	54	93	27	99	43	74
AGTGCTTATTGTTAAG	ref_6042_new	85	38	109	97	42	89	42	63	41	74
TCCATTGTCGTCCAAG	ref_6042_new	12	12	17	13	14	12	10	10	15	14
TTAGAACGCCCTAATG	ref_6042_new	303	125	409	321	109	292	171	294	166	241
ATGCATACCGAAGATG	ref_6042_new	117	56	131	162	44	135	61	124	50	95
AACTCCTTGTATTTGA	ref_6042_new	143	52	146	138	44	118	61	157	60	114
GCCCTCGTAGCTCGTG	ref_6042_new	5	0	3	6	1	6	8	4	2	3
CCTGGCCCTGGTCGCA	ref_6042_new	417	160	546	516	198	435	174	461	192	404
GCACTTCCGTCCGTCC	ref_6042_new	21	7	17	23	11	13	3	12	8	15
GCAAGTGGTGTTCTAT	ref_6042_new	32	8	23	20	11	26	7	16	17	25
TGCTGTTATTAGTGGT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TTTAAACTACGTAGCT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCTTTTGGACATATTT	ref_6042_new	268	91	320	298	139	207	127	264	130	255
CAATTCCGGTCACTGG	ref_6042_new	1	12	3	2	12	2	9	0	9	8
CCCTTATCGTTCAGCA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TTACTACCCAACTATT	ref_6042_new	6	4	14	14	6	11	7	10	5	3
CGATGGTGAACATGAT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CGTTTGTGCGGAGCAA	ref_6042_new	34	10	45	36	18	46	19	40	27	22
CCTCCAGTAGAGCCCT	ref_6042_new	12	9	26	22	11	20	11	17	7	24
GTAGGTTTCATAGCAC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
ACCTCCTTAAAACGTA	ref_6042_new	49	20	74	72	27	61	27	50	31	36
TATTACGCAATGTATT	ref_6042_new	43	7	39	47	14	53	19	31	14	35
CCTCGTTAAACTTCCA	ref_6042_new	29	13	34	51	19	32	27	32	27	49
GAGGACAGTAATCGAT	ref_6042_new	51	9	65	44	18	42	14	41	16	29
TTTCGCATGGAGCGGA	ref_6042_new	69	34	91	70	26	84	32	66	28	48
ATTGTTGTGCTTATCG	ref_6042_new	33	16	43	22	18	26	10	35	8	26
AAAGGTATGGTGGTGC	ref_6042_new	19	7	19	22	10	16	12	16	8	16
CTCCGATCGTTCTATC	ref_6042_new	47	46	58	40	56	35	59	39	46	50
GTTAATTGAAAGCGTT	ref_6042_new	81	20	100	82	26	80	23	58	52	94
TAGCTACCGGGATATT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TAGTTCTACCTACTCA	ref_6042_new	10	3	10	4	4	5	2	5	6	4
TGTTTCGGCATATTCG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TTTTGGACTTTTGGTA	ref_6042_new	50	19	71	76	26	56	34	42	31	39
TAGCGAATTGATAGTA	ref_6042_new	386	152	450	390	173	436	185	385	178	337
CAGCTTTTTTACGGAT	ref_6042_new	33	21	52	34	18	30	17	41	20	27
GTGTTGTGTCATAAGC	ref_6042_new	136	84	218	172	71	171	100	137	85	120
TCAGGGGTAACTCCTA	ref_6042_new	67	39	74	80	47	58	32	79	39	48
CATTCTCTATATCAGT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TTACTCTATACTCAGA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCCTTTCATAGCGGTG	ref_6042_new	50	30	76	50	21	35	26	43	27	45
TCACAGCTCCCTAATG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TATCCATGCGCGTTAG	ref_6042_new	48	28	47	40	20	38	23	49	16	51
TGATCGCGTTCGGGCA	ref_6042_new	75	17	86	81	29	50	42	49	39	58
GGACCTTGGGTGATAT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CAGGGTCGTATTGGGG	ref_6042_new	110	47	135	101	32	104	37	103	46	97
ATACCCTTTCAGGAGA	ref_6042_new	23	8	42	34	15	30	15	23	9	28
AAACTTATGGCATTTT	ref_6042_new	29	16	40	37	11	28	21	31	17	24
CTCTGCTTAAACTGTG	ref_6042_new	60	23	75	72	27	59	30	59	30	59
ATGACGCCGCAGCAAC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCAACGTGGTATAAAC	ref_6042_new	58	15	65	46	30	48	17	43	27	31
AGGTGAGTACTGGCCC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GAGTGTACGGTATATG	ref_6042_new	75	34	104	99	32	89	37	67	30	56
CCGTGTTGAAAACGGC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
AAGCCGCAGTATCACC	ref_6042_new	86	35	112	101	23	67	21	92	37	66
GACTTGATAGGAATCG	ref_6042_new	40	20	51	35	16	35	11	34	40	31
TGGATTTTGGTTCTCA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TATATTTGATTTAAGT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CTATGCATTAGCGGGT	ref_6042_new	33	16	54	43	26	21	16	46	32	39
GTATTTGGGTTTCAAC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
AAAGTTTAGAAAACTG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCCACTGACGCTTTGT	ref_6042_new	172	71	199	179	65	160	79	161	65	129
AAATGTGTGTTGTTAC	ref_6042_new	30	14	41	34	13	24	19	21	13	23
GATCGTGTGCGCTGCC	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TAGGGAGTACAGGTTT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CTATATCTCGTTATAA	ref_6042_new	12	3	16	20	10	11	7	18	0	9
GCTCCAGGATTCCTCG	ref_6042_new	8	7	19	14	8	17	5	18	6	10
CAGCCGGTGTATGTTA	ref_6042_new	62	46	103	83	54	63	51	86	47	68
AGGGCCCGCCGGAGAC	ref_6042_new	45	16	48	55	16	51	19	56	25	48
GGAGGATCTAGACTCA	ref_6042_new	124	68	179	159	69	122	60	137	63	124
GTTTTAGCGTGTATCA	ref_6042_new	43	27	56	41	27	34	26	30	26	24
GGTCCTGGCGGGCCAT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GTCCATAGGTTCGGAG	ref_6042_new	397	189	534	422	185	408	179	447	200	361
GCCAGTTTCCGTGGTG	ref_6042_new	39	16	42	39	23	53	18	46	29	38
AATTTAATTCAGGTTC	ref_6042_new	134	56	158	135	40	142	51	101	63	122
TCAGTTTTACTGTGTA	ref_6042_new	305	137	364	308	138	298	164	266	135	280
CTCAGTTGTCCCGTGG	ref_6042_new	83	43	134	121	62	86	58	86	52	80
ATCAGCGGCTTCTGTG	ref_6042_new	36	15	29	19	19	26	18	33	15	22
GACTATCTTACCGGTT	ref_6042_new	107	55	140	120	79	103	82	106	66	77
TGTAATCCGCCATAGG	ref_6042_new	51	13	79	56	25	72	19	72	26	53
GCAGTATTATTGTGCG	ref_6042_new	62	38	82	72	32	49	36	51	30	38
AAATGGAGATACGCTT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
AAATGTCGCGGTTGTT	ref_6042_new	49	20	46	50	23	38	20	34	6	29
GTTATTTCGCCCTTTC	ref_6042_new	472	168	587	470	177	451	226	428	216	428
GACCGATGGTTGTTCC	ref_6042_new	38	13	29	33	16	30	15	39	15	26
TGTACTGTCTAGTTAG	ref_6042_new	210	87	220	240	90	202	112	166	105	170
AGCACCACCCCTTTTT	ref_6042_new	379	218	536	417	209	409	273	410	279	350
CTTGTGACCTTCGTTA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCTTTCGCTTATCTGG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GATCGAAGGTGCACCA	ref_6042_new	81	59	82	72	66	64	44	70	67	36
CTAGATTTCATTCCCG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
TCTTAAGCTCGTCTCA	ref_6042_new	44	11	53	46	19	32	16	32	24	32
TCTGTGATTTCCGCAT	ref_6042_new	0	0	0	0	0	0	0	0	0	0
GTTGGGTGTTTAGCAT	ref_6042_new	13	15	26	23	8	19	10	20	13	12
CGGTCTGTCGCGTCGG	ref_6042_new	247	108	291	272	125	220	129	226	119	231
CCACCTACACTCTTAA	ref_6042_new	65	31	78	72	29	58	37	49	32	57
GGTATGATTAACCGAC	ref_6042_new	139	69	190	168	82	145	57	155	68	105
ACGGCGATATTCTAGA	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CCCCGGATAGCGTGTA	ref_6042_new	3	8	8	5	11	6	6	9	5	5
AGGTGTTCCTTACACC	ref_6042_new	59	35	78	56	25	67	34	57	34	47
TCTCTGAGTTAAACAA	ref_6042_new	60	32	85	67	34	62	42	85	42	60
GGTTTGTATGCTGTGG	ref_6042_new	9	5	21	14	4	16	4	4	2	6
TCATCAATATAGTATG	ref_6042_new	0	0	0	0	0	0	0	0	0	0
CTTTCTGCTCTCCGGC	ref_6042_new	123	63	191	166	68	142	73	134	67	149
AGCCCGGCTGGTGCCT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
AGAATAGCCTGAGAGC	alt_5737_new	38	56	38	39	72	52	65	50	73	47
TAGTAAGTCTGGGTTC	alt_5737_new	3	2	3	1	8	8	4	2	5	0
CTAGCGTCAGTGGAAT	alt_5737_new	21	16	9	11	14	6	26	10	25	15
CTGCGCAGAAGATGGA	alt_5737_new	46	66	56	51	72	48	68	48	72	46
TGTTGGTGCGGTTGCG	alt_5737_new	0	0	0	0	0	0	0	0	0	0
TTCGTAGTACTGGATT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CCGGTATTCGAGTCGT	alt_5737_new	8	15	8	7	22	8	25	13	26	9
CATACCGGACGGTGCA	alt_5737_new	0	0	0	0	0	0	0	0	0	0
ATAACCGTGGTGTGTT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
TTAAAGTCCGTCTAGA	alt_5737_new	0	0	0	0	0	0	0	0	0	0
ATCTATGATATGCTGC	alt_5737_new	6	7	5	9	3	8	5	7	12	2
TACATTGACGCTTATG	alt_5737_new	3	0	4	0	0	4	0	0	6	1
TACCCGGGGGGGTTTT	ref_5737_new	147	132	163	143	128	132	158	130	163	132
GGCCTTCAATCTTGAC	alt_5737_new	1	0	3	1	2	2	1	1	3	0
GACTTATTCATGCAAC	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CGAACTTGACTGTTGT	alt_5737_new	23	22	12	6	22	20	19	12	25	17
ATCGAATCACACGCGG	alt_5737_new	12	12	25	26	23	12	17	14	21	10
CTAATAGATAGTAGGT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CACTTATGCGGCCCTC	alt_5737_new	22	35	36	32	38	41	33	22	34	21
GGCCGAGTAGCCTCTC	alt_5737_new	0	0	0	0	0	0	0	0	0	0
ACCCCTCAGTATAATA	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CTCCTCACTCACATAT	alt_5737_new	11	7	14	5	10	7	10	10	6	2
CGTATTGAGTAATGTT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CTTTTTATGCATTTCC	alt_5737_new	1	3	4	1	3	0	2	2	1	2
ACGCGATATCACTCTC	alt_5737_new	110	117	117	105	84	89	90	97	99	86
ACGCTTCCGTACGGAA	alt_5737_new	262	330	288	252	328	249	342	246	351	264
ACTTATTTGCATCAAC	alt_5737_new	62	85	79	45	77	50	75	63	88	54
GCTGGAAGGGAGCTTT	alt_5737_new	34	39	53	36	47	44	54	42	58	40
TCACTTAGTCAGACCC	ref_5737_new	0	0	0	0	0	0	0	0	0	0
AACTTTATCCACACAT	alt_5737_new	45	56	56	51	57	60	77	50	63	43
CACAGGAAATGATTGT	alt_5737_new	1	1	1	1	1	1	1	2	2	2
CTCCCGCCTTTGTCTT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CCCGGTATTGTATTCT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CTTATTGGCATCGTCC	alt_5737_new	8	21	4	18	15	19	11	16	30	14
CGTAACTTATCTAGTT	alt_5737_new	44	57	49	36	55	36	72	43	74	43
CTCTTGACTTAACGTT	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CAAACGGCTGATTCGT	alt_5737_new	28	24	37	21	26	24	26	18	31	22
ATACAACAGGCTGATA	alt_5737_new	0	0	0	0	0	0	0	0	0	0
GTAGATTCTTATTTTT	alt_5737_new	11	6	6	3	12	5	7	3	9	4
TAGTATGTGTACCTTA	alt_5737_new	22	43	27	29	34	39	49	30	39	21
TACACTTCAATCACCT	alt_5737_new	7	3	5	2	3	4	4	4	7	2
TGGAATTTAGAGTTCC	alt_5737_new	52	85	75	79	104	79	90	61	87	45
TTCCATCTCATTGGTT	alt_5737_new	48	73	57	45	75	40	97	22	102	48
TTGCAGGTGGCGATGT	alt_5737_new	21	30	28	18	16	18	25	25	33	25
ACTTCTCTTTGGCGAG	alt_5737_new	79	110	96	83	113	77	102	75	96	57
AACTTAATGTCCTCAC	alt_5737_new	6	10	8	9	8	9	14	6	10	3
TATTGCTTGTAATCTC	alt_5737_new	22	39	58	37	34	33	50	33	62	32
AATTGCTGGATGTACT	alt_5737_new	7	9	8	4	7	3	8	6	7	6
CTATCCAGGCCATGTA	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CCTTGATCTTACTCTC	alt_5737_new	18	32	35	27	33	22	34	18	32	20
CTGCTGTTTCTCCTCA	alt_5737_new	61	72	82	58	84	70	101	56	78	55
CGCTCTCTGTCATCGA	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CAGGTCCGACTTCGGG	alt_5737_new	12	27	10	14	24	10	29	11	27	13
ATGTCTTTCGTGCTTG	alt_5737_new	27	57	43	34	69	36	58	35	64	32
GGATAACAGAGGTCTG	alt_5737_new	59	94	102	60	85	75	102	64	98	60
CCTTCCCTCTCGATTT	alt_5737_new	67	112	109	74	82	65	73	57	106	52
TAACCGCCCGAGTGTG	alt_5737_new	39	50	39	31	46	31	34	22	43	24
TCCGTCCTCGCTATAT	alt_5737_new	10	10	12	10	15	11	10	8	10	6
TAATTATCGGGACGGG	alt_5737_new	6	7	4	7	9	8	13	6	10	2
TTCTGCATTGGACAGC	alt_5737_new	6	15	8	3	7	9	7	10	10	6
GTTTAAGATTTCGGTC	alt_5737_new	0	0	0	0	0	0	0	0	0	0
AGCGAACTCAATCGTG	alt_5737_new	58	97	49	63	75	69	83	52	84	53
CCCCTATCAGTCAATC	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CGCACGCTCGCAGTAT	alt_5737_new	42	57	62	40	80	61	73	40	74	58
TGGTATCTTCACAAGG	alt_5737_new	0	2	1	0	1	1	0	0	1	0
CCTGGCCCCACTACCC	alt_5737_new	17	25	24	26	19	15	30	17	30	15
TACTGTTTTTCATGAT	alt_5737_new	24	36	41	24	46	30	40	31	33	23
GCCGCCGGCAGTTACG	alt_5737_new	14	29	13	17	27	15	26	12	26	20
CTGTTTGGCTCGCCGA	alt_5737_new	17	16	23	19	22	9	25	16	12	20
TTCGTCTTTCCGCGCT	alt_5737_new	15	10	20	19	13	13	19	12	14	13
TGCGAACGTTGGAAAG	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CAAAGTGACTAGGTAC	alt_5737_new	0	0	0	0	0	0	0	0	0	0
CACAAGCGCCGAGATG	alt_5737_new	35	35	32	41	49	32	39	21	36	31
AAGTTTTGTCAATTAT	alt_5737_new	63	84	97	76	78	78	93	74	108	55
GTTCATCGATTCGATT	alt_5737_new	45	38	46	38	54	33	59	41	56	36
TTTGAAACGGATTTAC	alt_5737_new	19	53	50	50	36	33	45	31	43	31
CGAACCCGGGTCCGGA	alt_5737_new	13	8	9	8	7	10	9	8	13	5
TAACGTCCGCTACATC	alt_5737_new	54	82	57	50	76	72	90	35	79	56
TTTCGCTGACGTATTG	ref_5737_new	40	61	42	40	50	43	47	31	65	28
TGCACATGAGGGGGAT	alt_3933_reverse	372	271	405	343	336	294	300	306	321	318
GCCGTTTTGCTGCCTC	ref_3933_reverse	40	22	42	29	14	37	24	21	24	20
GTCACCTAGCCAGGCT	alt_3933_reverse	216	281	220	179	280	152	310	172	324	168
GTAGTAGACACTCCTA	ref_3933_reverse	63	166	54	45	161	62	180	45	198	59
ATTCCGTTAAGTGTTT	ref_3933_reverse	7	7	9	9	8	7	5	9	3	5
GCGGTCTAAAGCGCTT	ref_3933_reverse	44	38	58	46	34	58	54	42	44	48
CTCGAGGCTCTCGTGT	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTGCCACGCTGTC	ref_3933_reverse	49	30	78	59	40	58	39	53	33	35
GCGCCAACCTACATAG	ref_3933_reverse	38	38	53	43	36	40	39	40	55	45
AGAGTTGGCCCACTCT	ref_3933_reverse	5	5	18	7	4	9	6	6	3	12
GCCTTGGTCTGGGGTC	ref_3933_reverse	21	19	30	18	13	22	18	17	14	12
CAACAGGAGTCGGCAT	ref_3933_reverse	21	13	24	27	21	17	10	12	14	23
TTCATTTTTTACCTTT	ref_3933_reverse	27	13	41	21	22	23	16	27	22	31
GAAAACATGGAATGTG	ref_3933_reverse	37	20	42	41	23	34	24	33	24	27
ACCGTTCCGCGTATTG	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTGCTCTTGTGT	ref_3933_reverse	70	59	116	76	76	83	80	80	63	59
CTTATAACTTGTAAGG	ref_3933_reverse	105	59	111	83	77	84	59	73	69	59
AAGCGCTCGTCTTAGT	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGGTCAAATGGTT	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
GCGTATCGTAATTCGC	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
TAACTGTCTTTCGTCT	ref_3933_reverse	74	60	92	77	77	64	64	69	68	67
ATGCCGCCCGTTAGTG	ref_3933_reverse	56	43	75	75	55	46	47	47	36	41
ATCATAAGCTGTACAA	ref_3933_reverse	97	57	91	70	84	77	62	68	63	82
TTCTCCACCGTCATTA	ref_3933_reverse	8	9	19	14	17	5	12	11	16	11
TAGGGCGCTGCTTAAT	ref_3933_reverse	58	45	60	51	46	50	41	49	41	53
TTATATTTTAAAATCA	ref_3933_reverse	69	44	82	65	44	70	37	64	69	56
AAGTTATTAGTAGTCG	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTAGATCTTCACC	ref_3933_reverse	80	59	94	88	61	64	73	76	68	56
CATATAGCTAGTCTTT	ref_3933_reverse	28	35	41	29	39	30	36	32	20	43
ACTGATTGATTAATGT	ref_3933_reverse	3	6	5	4	3	3	12	6	9	4
TCATTTCTACTCCCGC	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTCATATTTTTTT	ref_3933_reverse	74	32	86	63	26	47	52	45	33	55
AGTTGACAAGCTAAGG	ref_3933_reverse	140	131	180	147	125	133	130	148	130	136
CTCCAGGCTACATTGG	ref_3933_reverse	14	23	23	24	16	22	30	23	16	18
GTTGGCTACTGAATAG	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCTCATACCGTTC	ref_3933_reverse	84	70	114	87	78	100	86	80	92	71
GCCTCGGGATGACGGT	alt_3933_reverse	39	43	52	54	47	47	35	38	37	38
TCCCCAGTAGCCCGCT	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
GATACTTTTAACCATG	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
TCGTAATTCGTCGTCC	ref_3933_reverse	19	40	45	26	22	38	18	51	22	39
AACCACGTTGGGTTTT	ref_3933_reverse	7	5	15	8	12	8	15	18	11	16
TCGTTTCAAACGGGTA	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
AATGAGCGGCCCTGCT	ref_3933_reverse	38	20	51	25	18	40	23	26	27	27
TAGCGCCTCGTCTCTC	ref_3933_reverse	24	27	40	34	27	33	26	24	32	26
TATAGTTCGCTAACTG	alt_3933_reverse	310	305	407	314	299	334	305	340	344	280
CAAATCCCCAGAGTGC	ref_3933_reverse	163	227	205	187	232	139	252	194	248	152
TCGCACAAATCTAGTA	ref_3933_reverse	98	52	80	92	60	82	60	90	62	84
ATGCCAGAGACTCTCG	ref_3933_reverse	39	42	62	53	43	40	36	31	39	41
AGTTAAAATATCTTTG	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CTATAACTAAGATGCT	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTGATCGTTCTG	ref_3933_reverse	34	23	40	28	18	36	22	24	29	31
GCGTTGGGGCCGTCCA	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CGTAGACCTGGCATCA	ref_3933_reverse	134	94	177	157	92	138	86	142	115	116
GTAACTTGACCATCGC	ref_3933_reverse	43	33	49	47	33	39	35	42	41	36
GCCAACTTGGGGGCCA	ref_3933_reverse	291	259	348	353	273	293	293	308	311	303
ATTCTTTAGTCGCTCC	alt_3933_reverse	15	13	9	23	11	20	11	12	16	17
ATGAATCAACCGGCCA	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTTTGTCTACCGG	ref_3933_reverse	125	100	144	133	133	130	141	135	154	114
GACTGCACATCTAAGC	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
TGATCGCCAATAGTGT	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
AAAATCACCTCAATTG	ref_3933_reverse	59	49	88	72	52	66	42	55	49	51
GAAGCATGTGATCCCA	ref_3933_reverse	14	13	23	26	14	25	10	17	12	24
ATGGTGCTCAGGCAGG	ref_3933_reverse	14	13	28	20	8	13	17	10	12	12
TTTACCTTGCATCTTT	ref_3933_reverse	408	282	517	427	291	405	303	402	294	328
AACGGCTTCGATCGTA	ref_3933_reverse	94	72	129	103	72	102	46	63	69	102
GTGAGTAAATGCGCCT	ref_3933_reverse	35	21	36	35	22	31	12	29	21	22
TCAATCCAGGATTTAC	ref_3933_reverse	26	22	30	16	16	13	22	14	20	17
GCGCCCTTTCAAAGGC	ref_3933_reverse	110	75	111	105	83	98	76	92	76	85
CCAAGAGCAAATCTGC	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCATTTCAGGAAT	ref_3933_reverse	35	32	50	43	28	38	39	28	42	24
GTTAAGTACGTTCGGG	ref_3933_reverse	27	19	32	18	25	19	18	24	13	23
AATATATGGTCTCGTA	ref_3933_reverse	123	78	136	120	87	107	63	91	83	101
CTTTACGCGACTCGAC	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
AATACCTTATTGGGAC	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTGATGACTTATT	ref_3933_reverse	16	41	19	16	36	10	48	20	50	16
CTCAGATGCGACACGC	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
CGCCGCCACCCTGTCT	ref_3933_reverse	20	16	21	13	19	16	9	20	16	9
GTCTCCGGGTTTTTCC	ref_3933_reverse	5	8	1	8	5	5	7	2	7	9
CATAAATCTACGGCTA	ref_3933_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCTAGTTCGATAT	ref_3933_reverse	76	58	97	90	50	58	48	59	73	63
TTACATTTCGGGGTGA	ref_3933_reverse	26	9	30	30	20	37	24	34	18	25
ATCTTTGCTTGGATCC	ref_3933_reverse	190	129	203	188	160	180	147	161	145	180
TCATTATGAGAGTGCC	ref_3933_reverse	6	2	10	5	0	5	4	5	3	3
ACAGCACGCTGGATAG	ref_3933_reverse	28	22	36	22	33	19	25	25	24	20
TTTTCCGCTGTCCCAT	ref_3933_reverse	24	25	33	50	32	26	20	20	31	43
GCTCCTCGCTGCGCTA	ref_3933_reverse	201	189	252	250	171	208	190	207	177	196
ACGGGAAAAGGTAATT	ref_3933_reverse	73	47	86	76	54	64	53	66	50	60
CCGTACTTCAATCTCT	ref_3933_reverse	1	2	1	3	4	4	3	1	6	3
CCTGTAAGGTTCTGTG	ref_3933_reverse	10	15	12	5	18	10	20	8	10	7
TTTTGTACAACCTCTG	ref_3933_reverse	35	25	39	45	24	27	25	17	36	29
CATCAAGGATCAGGGC	ref_3933_reverse	7	9	21	18	16	9	13	10	27	9
TAGTTGTCAACGCATC	ref_3933_reverse	49	34	80	52	29	57	34	49	36	46
ATTACCGTTAGCTCAT	alt_3970_upstream	54	20	112	82	15	73	25	73	39	58
GTTAGCTCCATGCTAG	alt_3970_upstream	473	133	575	468	136	416	158	430	150	375
GTCCATCTTTGACTGA	alt_3970_upstream	74	26	85	55	25	76	22	59	30	47
CGGTTTTGTCACACTA	alt_3970_upstream	84	41	129	109	40	97	44	96	29	95
GCCATTGGTGGGGGAG	alt_3970_upstream	100	39	126	166	55	129	40	121	50	99
ACTTGTCTCTATGACT	alt_3970_upstream	32	21	32	37	16	38	10	38	10	32
GTCTTATGCCTAGTAT	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
ATATTCGTGAGAATGA	alt_3970_upstream	350	100	387	347	84	346	124	325	108	319
TCTAGTCGTCCAGACT	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACGCTTGTTCTT	alt_3970_upstream	31	15	36	50	5	28	2	25	8	44
AGGGCCCCCGCCACAC	alt_3970_upstream	195	62	200	243	56	166	61	167	67	190
CATAATGTTTACTTAC	alt_3970_upstream	0	14	5	1	3	2	8	4	12	0
TTGGATGATCTGTAAT	alt_3970_upstream	287	87	374	336	87	254	99	280	86	282
ACAAACGGGGCCGTCA	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
AAATAGGGTGGCACAA	alt_3970_upstream	14	5	13	31	2	18	5	7	10	17
TATGCGTTCTAGGAGT	alt_3970_upstream	78	25	126	61	35	78	33	81	37	67
AATACCTCGGCGAATA	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
GGTCAGGCTGATTGCA	alt_3970_upstream	31	14	21	14	10	11	10	31	13	22
TCGGAGCGCACCATTA	alt_3970_upstream	86	28	127	110	27	86	17	83	28	61
CATGTCACTTAATGGC	alt_3970_upstream	177	50	203	201	63	160	56	154	51	151
CTTCAGCCAGTTACTT	alt_3970_upstream	101	69	153	133	74	121	49	118	65	119
ATTAGTGCACGATCAA	alt_3970_upstream	55	18	82	60	13	60	17	52	29	56
GTGCTTTTGCTTTGGA	alt_3970_upstream	1342	515	1679	1543	466	1364	498	1352	546	1174
GAGGTTACCCATCCTA	alt_3970_upstream	290	74	363	278	88	254	110	298	89	228
GACATCGCGTACCATA	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
GTTAAGATGTTCGTAC	alt_3970_upstream	71	41	120	86	36	85	30	76	46	76
CCTTTCGACGTCTGAC	alt_3970_upstream	100	45	129	107	41	93	38	107	39	86
CCTCGTAAACACGAGT	alt_3970_upstream	199	61	233	223	47	185	54	177	78	121
GCCTCGACAACGATTT	alt_3970_upstream	49	21	46	42	19	42	18	43	23	40
TGTACTCCGCTTCTTA	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
TTCAAACCTGCTTTAA	alt_3970_upstream	292	116	363	322	112	263	125	287	135	253
TGGGGGACTTGCCCAT	alt_3970_upstream	146	30	166	135	43	113	46	136	34	96
ATCCCCCCTTAATTCA	alt_3970_upstream	83	26	136	91	28	74	24	91	18	71
ATAATCCCGCCTCCAG	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTTCATGATAGTG	alt_3970_upstream	187	54	278	181	70	151	74	176	66	159
CAAGGTTAACTCGTGC	alt_3970_upstream	233	56	271	223	64	195	71	197	72	195
TGCCTCCGGTTGCGTT	alt_3970_upstream	6	1	4	11	0	8	6	6	2	13
ATGGAACACTCGGAAT	alt_3970_upstream	24	8	39	28	10	23	9	35	13	24
TTTTCTACAGATGGGT	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGTTATTCGGCTG	alt_3970_upstream	193	63	241	209	66	165	48	168	62	159
CCTATGTCTACTTCAG	alt_3970_upstream	183	62	196	168	74	137	85	148	106	156
GTACATTGGACTCGGG	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTTGGTTGCCAT	alt_3970_upstream	65	22	98	88	18	66	28	71	28	54
CCCGTTGCGATTGCCG	alt_3970_upstream	1	1	1	4	0	0	0	1	0	1
ATTCGACGCCAAACCT	alt_3970_upstream	309	122	432	421	131	339	126	310	140	276
CACGCATGGGTAACCG	alt_3970_upstream	169	51	201	195	61	179	57	175	75	142
CCGTTCAATCCGAAAA	alt_3970_upstream	333	108	382	381	115	324	94	315	119	265
GGCGGCTGACACTCTG	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGTGTCGAATGGC	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGTTTGCGCGTCT	alt_3970_upstream	154	37	168	145	36	139	43	134	40	123
CAAGTCTCAAGTAGTT	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
AATTAAAACCGAGCTA	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTAAACGTGCCCG	alt_3970_upstream	375	122	453	416	126	368	136	349	134	344
ATAGTTTCAGGAGTAG	alt_3970_upstream	96	42	118	122	40	96	47	80	35	95
GTCCGTGCCGCCAAGT	alt_3970_upstream	511	214	748	652	247	583	253	591	239	501
GCCTTAGCGAGGTAGG	alt_3970_upstream	27	7	46	52	12	27	12	33	11	28
CGGTCGTCACTGAGTA	alt_3970_upstream	62	35	43	51	39	45	36	41	44	45
GATTGGCTGTCAGTTA	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
CCAAACCTTTGCAAGG	ref_3970_upstream	269	92	337	264	96	251	90	260	84	257
CTTAGGAATTCATTTA	alt_3970_upstream	33	9	29	25	5	34	9	23	2	11
TTTTTCTTGCTCAGTG	alt_3970_upstream	614	161	714	615	165	512	175	583	180	505
ATTCGCATTCTCTGTA	alt_3970_upstream	1174	357	1490	1296	347	1158	410	1041	402	1071
TCTCTTAGTCGTCGTT	alt_3970_upstream	179	52	211	194	57	183	52	162	74	145
TACCCCCCTCCACGGT	alt_3970_upstream	5	7	2	4	12	3	22	2	13	8
AGTCAACTTTTAACTC	alt_3970_upstream	138	35	175	194	48	151	53	140	48	161
ACGGAGTAATTTGCTA	alt_3970_upstream	0	0	0	0	0	0	0	0	0	0
TCCGACTCACGGTAAG	ref_5735_new	42	28	45	24	22	29	26	35	25	36
TGGTCCAGTCCTTTCC	ref_5735_new	0	0	0	0	0	0	0	0	0	0
GGGCAACGAGCCCTCA	ref_5735_new	105	86	144	90	77	107	67	82	91	96
GTGGCCTGGCCGCAAC	ref_5735_new	15	11	12	8	8	20	8	9	12	11
TTTTGGCTGTCTCGTT	ref_5735_new	54	42	73	39	35	57	35	54	27	48
TGTATAATCACCTTGG	alt_5735_new	0	0	0	0	0	0	0	0	0	0
TTTTTAGCAATCCCGC	ref_5735_new	99	91	127	95	77	103	91	97	120	115
GTTTGGGGAGGGTCTC	ref_5735_new	50	22	50	36	36	45	29	35	21	27
GCCTGTGTTCAACACT	ref_5735_new	17	14	30	21	25	23	14	14	32	19
CGGCCTTATCGCGGTA	ref_5735_new	0	0	0	0	0	0	0	0	0	0
TTGATTCTTTGTTTCC	ref_5735_new	75	31	88	52	31	56	51	65	42	60
TAATGTTAAGCGGCAG	ref_5735_new	86	60	100	71	56	76	79	64	58	59
TCCTCCGAGTTCTAGT	ref_5735_new	92	40	100	41	71	48	61	67	62	58
TAAGGCTCTCGGACAC	ref_5735_new	175	116	183	130	120	158	116	145	124	132
TCAGCTCGTTCTGTTC	alt_5735_new	0	0	0	0	0	0	0	0	0	0
TTTGCGGTTGCTTTCA	ref_5735_new	33	27	38	30	19	36	29	29	35	20
CGGTGACTATGTTCGA	ref_5735_new	8	33	17	13	27	11	25	12	22	8
TATGATACTTTCTGCA	ref_5735_new	42	42	66	41	28	32	30	39	30	42
ATAAGGCTGTTATACG	ref_5735_new	79	50	87	69	48	67	59	80	59	54
CTGGGATGTCTTCATA	ref_5735_new	30	12	18	28	27	30	33	24	28	34
CCAGTTCGCCCTGTCG	ref_5735_new	105	64	127	107	91	111	70	98	70	90
TGTGTACCGAGCAACT	ref_5735_new	46	38	53	35	44	47	28	28	34	40
GTCCCATCCCACATTG	ref_5735_new	29	45	38	43	41	26	30	42	43	35
TTGTCATTACCCCCCG	ref_5735_new	7	20	5	4	23	9	21	5	18	6
CGTCCACGAGACATGC	ref_5735_new	10	8	5	3	3	7	6	0	1	4
TCTTAGGCTGCACCAT	ref_5735_new	268	198	331	264	256	313	253	254	249	256
AGGCTAATTGTTCGTA	alt_5735_new	120	101	180	120	103	147	100	141	128	123
GGAATGTTTCTCTGTG	ref_5735_new	52	33	52	47	33	50	51	30	47	36
TTCTGCCTCCTCTATG	ref_5735_new	6	5	13	5	10	5	6	11	4	6
GATCTTCACCGTCTTT	alt_5735_new	114	86	138	91	107	99	90	112	87	106
CTACTGCTACCCGACC	alt_5735_new	19	37	46	36	27	32	37	33	47	35
GTACCCCGTCCATTCT	ref_5735_new	7	11	7	9	8	12	14	12	18	11
GAGTGATAGTCAATGA	ref_5735_new	76	64	91	69	61	57	43	78	75	66
TGTAAGCCGGCGAGTT	ref_5735_new	37	32	30	20	31	44	24	25	31	26
GGCTCCTCCTCTGTTT	ref_5735_new	197	131	199	192	138	178	132	176	154	162
GTGAAGTGTACGGAGG	ref_5735_new	70	45	95	61	49	91	60	74	63	75
GTTACTGGCGCGCAGT	ref_5735_new	7	13	11	7	5	9	17	15	10	13
GAGCAGTGTCTTAATT	ref_5735_new	119	74	129	85	69	96	83	104	97	95
GCGCACCGTAAGATAT	ref_5735_new	148	114	143	112	124	135	114	115	110	112
CCGGGTATCAGGAATT	ref_5735_new	114	95	138	112	102	106	88	103	103	100
CATTACCATGGATGTG	ref_5735_new	12	13	9	7	9	10	7	9	9	8
CAACATGTCTACCCAA	alt_5735_new	590	453	765	540	496	579	451	574	453	596
CAGTACCTGAAGGTAA	ref_5735_new	0	0	0	0	0	0	0	0	0	0
CATGCTTGTCATGTGC	ref_5735_new	0	0	0	0	0	0	0	0	0	0
CCAAGGTCCACCACTT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
GCTAATGCGTTTAGTA	ref_5735_new	7	10	16	9	10	13	10	7	19	5
CTAGTTGTTAGCTGAC	ref_5735_new	34	26	55	28	32	36	44	43	35	38
CCCCCTAGTGTGAGGC	ref_5735_new	57	59	60	42	30	31	35	39	41	42
TTGCCGAACAAGAGTC	ref_5735_new	11	11	11	7	5	6	8	6	6	13
ATATATGTACATTACA	ref_5735_new	11	7	19	16	11	15	10	10	4	4
GATGGTATTGCAATTA	ref_5735_new	6	4	12	8	1	1	3	4	0	4
GCGTCTTCAACCGAGC	ref_5735_new	63	40	84	65	53	57	49	56	40	72
CGCTGTATACGTGCGG	ref_5735_new	30	20	28	31	31	18	19	21	20	23
CCTTGAGCTTCATGTT	ref_5735_new	32	26	39	41	22	34	28	40	25	32
AGTCCGCTCTGGATTG	ref_5735_new	129	96	159	126	77	143	97	143	103	147
AGTAAGACCCAAGTTG	ref_5735_new	18	2	8	14	7	7	4	9	10	12
TGTTCGATGGGCAGAA	ref_5735_new	0	0	0	0	0	0	0	0	0	0
ATGACCATTCACACCT	ref_5735_new	14	18	26	25	19	17	16	22	16	15
ACGGCGTATCTGCTGC	ref_5735_new	72	67	100	89	73	76	59	69	77	52
CGCAACGGTGTAATCG	ref_5735_new	26	36	60	41	27	30	41	46	39	29
TTTATTCCAAGTCATA	ref_5735_new	4	0	7	2	2	2	2	1	4	2
GAATGTCTGTCTTGCC	ref_5735_new	20	24	42	29	23	25	18	29	20	24
CCTATGGGCTTTAAGT	ref_5735_new	0	0	0	0	0	0	0	0	0	0
CTACATCTACAAATTC	ref_5735_new	67	40	67	60	36	52	45	58	43	38
TGGCCATCCCGTGGTT	ref_5735_new	0	0	0	0	0	0	0	0	0	0
TGTCGTTGTCGTCCCT	ref_5735_new	30	27	46	34	35	24	17	36	33	33
AGCAATTGCCGAGAAT	ref_5735_new	43	43	57	48	40	61	41	49	41	30
ATGCTCGCTTTATCGG	ref_5735_new	36	15	35	12	34	24	26	35	20	31
CCAGGGCGTGTTTTTC	ref_5735_new	37	49	55	43	45	38	61	35	55	39
AATATCCGGTATGGGG	ref_5735_new	0	0	0	0	0	0	0	0	0	0
GCCTTGTTTTCAGGAC	ref_5735_new	5	9	16	8	5	10	7	4	5	3
CCCCTTTCTATTTCTC	ref_5735_new	38	24	68	38	30	45	30	38	33	39
CGCACTCTAATCGGCT	alt_5735_new	31	36	32	40	20	30	31	31	23	34
TTCAGCACATAGCGCC	ref_5735_new	56	70	92	71	53	55	63	68	75	62
GGTTCCTTCTTTTTTC	ref_5735_new	49	43	70	55	26	47	37	56	36	37
TTGTGAGCCCGCCTTT	ref_5735_new	0	0	0	0	0	0	0	0	0	0
CTTTACTAGCTCTATT	ref_5735_new	59	73	64	73	75	68	53	53	51	55
GCTGCGCGCGCGCGCA	ref_5735_new	67	38	72	68	39	66	44	51	56	63
CACCTGTTGGCCCCAA	ref_5735_new	59	51	47	59	34	52	54	49	37	52
TGCAGTTCTTAATTAG	ref_5735_new	109	79	144	120	99	98	104	114	86	138
CGTCAGGAAGGATTAC	ref_5735_new	32	25	40	37	43	29	36	37	31	28
CGTCGGTGACCAAGAC	ref_5735_new	9	5	18	14	12	14	11	18	17	13
TCCGTCATCTTCCGGG	ref_5735_new	95	53	88	55	77	83	66	89	71	87
GAACAGCGCACAATCT	ref_5735_new	44	37	55	48	31	53	44	34	51	41
AGACGTGCCGTTGATA	ref_5735_new	12	13	11	18	5	7	2	16	8	12
GAGTCCAGGGTTACCT	ref_5735_new	38	33	40	40	35	36	28	33	44	40
TCGTTTTGTATGGTAT	ref_5735_new	124	73	142	98	83	100	82	82	70	89
CGATCCTCGGCTCCCC	alt_5735_new	35	12	28	39	19	30	16	32	27	30
GTTTGCCTCATATTCT	alt_2871_missing	0	0	0	1	0	0	1	1	1	0
GTATAACTTGCGTTAC	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TCTGTCTACCCGATTG	alt_2871_missing	7	7	10	9	12	4	8	0	5	4
TTGGATAATAGATTCT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
CGTTCAGCGCTTGGCC	alt_2871_missing	0	0	0	0	1	2	0	0	1	1
TTTGCTGGTGGACCTA	alt_2871_missing	0	2	2	2	0	1	0	2	4	4
CGACAATGTTTCCTGA	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
GACTCCACTTTTACGC	alt_2871_missing	0	0	0	0	1	0	2	0	2	1
CCCGGAGGACAATCCC	alt_2871_missing	0	0	0	1	0	0	1	0	0	1
ACTCCATTCGCCTTTT	alt_2871_missing	1	6	0	1	2	0	5	1	2	2
GAACACGTACCCGGCC	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TCCGATAATCGATCCT	alt_2871_missing	1	0	1	0	0	0	0	1	1	1
GGGCCTCGTCCTATCG	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
AGTTTTTCACGTCGCT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
ATCCTATCGTTCATTG	alt_2871_missing	0	0	0	0	0	0	0	1	0	0
CCATGTATTGTGTCGT	alt_2871_missing	0	0	0	0	0	0	0	0	2	0
TTTATCCGTCACGGGC	alt_2871_missing	2	3	1	1	0	3	1	2	2	2
ATTACCTATTAGGCTA	alt_2871_missing	2	2	3	4	4	3	3	2	2	4
CTCTTCTTTTAGTAAG	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
ACCGGCGGCTTGTTCG	alt_2871_missing	0	0	1	1	0	0	3	0	0	1
TAGTAGAGCTGTTTGT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TATCGCTAAGCTTCCG	alt_2871_missing	1	0	1	1	2	0	0	2	2	0
CGCCTCGTTTTCCTCC	alt_2871_missing	0	0	0	0	0	0	2	0	0	0
TCTAGGTGAGGTTATT	alt_2871_missing	2	4	1	3	1	3	1	2	0	1
TATTCTTTAATTCCGT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
ATGTGGTAGCTTCGGT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
ATGAGGGCGGTTAATC	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
AACATGCCTCCATTAG	alt_2871_missing	1	3	1	0	0	0	2	5	2	4
CCGATCACTACGCATC	alt_2871_missing	0	1	1	2	0	0	1	1	0	0
GCTACTCAGGAGGAGT	alt_2871_missing	1	1	1	0	0	1	0	0	0	0
ATCTCGCTTGTCTCTT	alt_2871_missing	0	0	1	0	0	0	3	3	1	0
TACGTTCGCTAGTGAA	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
CGGTACCCCGCTCCCG	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
ATGGTGCTTGATATTC	alt_2871_missing	0	0	0	0	0	0	0	0	0	1
GCCCACTGATGGTTTG	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TGTTCTACACAGGTGA	alt_2871_missing	8	0	0	1	0	0	2	0	2	2
ACTCAGCCTCACACAG	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TAATTGGTGTGATTTA	alt_2871_missing	0	0	1	2	0	0	0	0	1	0
TTTTTTCGTAGTTCAC	alt_2871_missing	2	1	0	4	0	1	2	1	0	0
CATGCTTTGGATTGTA	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TGGCATTAGAATCTAG	alt_2871_missing	0	1	2	0	2	0	0	0	0	2
TCCTAGTGTGTCTGTT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
CACTTCCCTAGACACT	alt_2871_missing	0	0	0	0	2	0	0	0	1	0
TGGATACACCGACTCT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
GTCGCTCCGAACGTGG	alt_2871_missing	0	1	0	1	0	0	1	0	0	0
TCGGTCTTCTCTTTCA	alt_2871_missing	0	0	0	0	0	0	1	0	0	0
GGGGTCCTGTAGACCT	alt_2871_missing	0	1	0	0	0	1	0	0	3	0
AGGTAATGCATATCGG	alt_2871_missing	0	1	2	2	3	4	2	0	0	4
AACTTGTGTCCTTGTT	alt_2871_missing	1	0	0	0	4	0	2	0	3	1
AGTCGGACTTTTAGAT	alt_2871_missing	1	0	2	2	1	0	2	1	2	0
CGGTTTTTCTTATGGA	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
GCCCTATATGCTTTGT	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
GATCTTCGCATCGTCA	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TTGTCATGCCCCCCTC	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TGAACACATCCCACGG	alt_2871_missing	0	0	0	0	1	0	0	0	0	0
GGTATCAGATTTGATT	alt_2871_missing	1	2	0	0	0	1	0	0	0	0
TCACAGGAGCGACAGC	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
GATCATTCGTCTAATG	alt_2871_missing	1	0	2	2	2	0	0	2	1	1
TTGCATGCCGCGTGTA	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
TGTTCCCCCTGATTCC	alt_2871_missing	0	1	0	1	1	0	1	0	0	0
TGTCAGACAGACCTAC	alt_2871_missing	2	2	3	2	2	2	3	1	3	5
GCATGTTCATATTAAA	alt_2871_missing	0	1	0	0	0	0	1	1	0	2
ACAAAGCGGTTCTATC	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
GTTGAACAACTTGCGG	alt_2871_missing	0	0	0	0	0	0	0	0	0	0
GCTTATGCTGCGACCG	ref_2378_fdr	32	26	25	32	18	32	17	19	16	33
ATGTCGATCTCGGTTC	ref_2378_fdr	26	13	38	22	13	25	15	26	10	20
GCTGTTCTTCGGACTC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTGCATTTCCGC	ref_2378_fdr	5	3	7	6	1	4	9	1	4	5
AGCGCCTGGTTGTAGC	ref_2378_fdr	29	23	40	26	14	32	16	29	17	31
GCAGATTAGAGGCGAA	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
CATCATCGGCGGCCCT	ref_2378_fdr	94	46	123	133	50	104	66	99	75	90
AAGCAGTAGCATCTTG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTTACTGCACAT	ref_2378_fdr	20	17	28	37	11	26	13	16	13	21
CAAGGGGGGCAAGCAC	ref_2378_fdr	133	81	157	161	66	127	80	130	80	107
CATGCACGACTCGTCT	ref_2378_fdr	47	30	46	40	38	48	30	32	24	40
AATGTCATGAGTCCGT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
AAACCAGACTGATCTT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
ACATACCGATCACTCG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GTACTATGAGCCTTAC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GGACATATCACTTAAT	ref_2378_fdr	29	10	26	25	14	30	14	31	21	22
CTTTAGTCGTGCATGG	ref_2378_fdr	15	12	29	14	11	14	8	19	8	14
ACGTCATCTGGGTATC	ref_2378_fdr	63	43	73	61	41	53	45	67	36	53
ACGCTTGTCCCAGGGC	ref_2378_fdr	36	25	49	31	18	33	19	36	24	34
GCAGCCAATTAGCCGG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
ATATTGTAATATGGAC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTTGATTATTATTAAT	ref_2378_fdr	52	35	82	70	36	59	39	58	63	58
TTCATCAGCGCCGATA	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTCGTGGCCTTTA	ref_2378_fdr	242	141	294	257	137	234	127	229	159	179
CCGGGTGGAAACTCAT	ref_2378_fdr	116	42	126	120	46	101	61	86	42	97
AGGTGTCGTCATGCGT	ref_2378_fdr	21	12	20	8	7	12	12	19	13	15
CTTACCAGGCCTGAGA	ref_2378_fdr	9	0	10	16	11	9	11	10	3	9
CTGAGGCATGGTAACT	ref_2378_fdr	316	170	359	368	168	297	179	303	184	257
GCAGAACCTGACCGCA	ref_2378_fdr	25	13	33	26	8	17	10	18	17	18
TAGTATAAATACATGT	ref_2378_fdr	7	7	15	11	10	10	6	11	6	14
TGTGTCCGTGTAGCTA	ref_2378_fdr	14	9	23	17	10	19	7	15	13	13
TGGCTCCGACCTAGGG	ref_2378_fdr	23	13	25	16	15	12	14	21	6	22
CTAAACGTTTCATCTG	ref_2378_fdr	73	38	84	64	50	71	47	48	38	50
CTGGTAGGTTTCTCTA	ref_2378_fdr	25	14	36	36	16	23	20	24	19	28
CCCTAGTGTTGTATAG	ref_2378_fdr	13	8	11	13	12	12	12	14	16	9
GGAATGAGCGCTCTAA	ref_2378_fdr	9	1	1	7	4	3	2	8	1	5
CTGAGACCGGCAGGCT	alt_2378_fdr	129	86	181	160	90	147	76	131	71	123
GTTACGCGCCTGCTTA	ref_2378_fdr	3	1	2	3	1	2	0	3	2	1
ATTTAAGAAGATTAAG	ref_2378_fdr	131	78	149	125	63	111	80	124	71	110
AATAAGGCCACTGTGC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TGATGTACTCTCAAGT	ref_2378_fdr	64	30	68	55	33	55	29	67	37	60
TATGGGCTGCTGACTC	ref_2378_fdr	34	17	32	33	17	40	14	36	16	23
CAGCCTCTGTTTAGAT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GGACACGTGCGGTGCA	ref_2378_fdr	62	24	85	59	38	54	34	52	34	58
TGGGATTGCGGGGTTT	ref_2378_fdr	31	21	33	34	14	32	12	35	21	32
GTTAATGGCCTTGGTG	ref_2378_fdr	33	9	37	30	18	38	16	35	18	28
ACGTTCAGCGGGCGAT	ref_2378_fdr	35	10	58	39	18	32	20	40	18	25
TCAGGTCGAGACATGC	ref_2378_fdr	63	74	73	76	79	74	75	82	72	58
TCAACCTGTTTTCCTT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGCTCCGGTTCTC	ref_2378_fdr	44	31	53	59	23	50	25	53	18	30
ACAGAATGGCCCGGCG	ref_2378_fdr	22	12	29	20	14	20	11	30	19	25
ATATGTTGTCAATGTG	ref_2378_fdr	81	43	91	63	31	69	42	63	36	55
GGTAAGGAGCTTGTCT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTACTGAAAGGCG	ref_2378_fdr	183	117	194	175	111	163	125	147	120	161
ACGTAGACAGCCAAGG	ref_2378_fdr	9	8	14	21	8	10	7	12	6	18
TTATTCACGTCTAGAA	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTTAATAAGCAGCAAT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GGCACTTCTGCGTACG	ref_2378_fdr	152	73	203	153	104	134	106	112	86	142
CCAGTATAGTCCCACC	ref_2378_fdr	14	18	19	23	10	20	9	17	9	20
ATTCGTCTAGTCTGGT	ref_2378_fdr	11	1	13	12	2	8	8	10	9	5
CAAATTAGCCCGTCGA	ref_2378_fdr	33	16	35	42	30	40	25	33	30	39
TGTTCCCCCCGACAGT	ref_2378_fdr	28	26	24	24	23	21	18	20	26	19
ACGTCCAGAGATCTTG	ref_2378_fdr	58	37	81	72	32	56	31	44	48	48
CTCTATGCTGCTCGGC	ref_2378_fdr	29	24	38	40	18	40	25	34	24	26
TTGTTCTCCACTCGTG	ref_2378_fdr	59	33	66	57	31	58	26	53	24	41
CCATCATTAGTGAGCT	ref_2378_fdr	89	43	94	85	39	82	49	81	44	90
CCGCACTTTGGCTTCT	ref_2378_fdr	32	13	33	32	18	22	18	25	16	27
TTGGTGCTAACAACGG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTATGTTCGATTACCC	ref_2378_fdr	49	23	48	52	32	45	28	53	36	53
AGCAGCCAACGTGGGT	ref_2378_fdr	7	9	3	9	4	6	11	8	2	10
GCTGCAACCGCGCGCC	ref_2378_fdr	116	73	146	121	74	113	61	106	72	108
CGCGCGGCATCACGTC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TATACGATTCTCAAGT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGGTTTGGGATGG	ref_2378_fdr	24	8	36	18	14	21	7	16	9	22
GCCATTCGGGACATTT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GATAGGTATTCAGTAC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GCTTATACACCAGGGA	ref_2378_fdr	34	19	39	24	9	18	19	28	4	25
TAAACTCATAGGGGCT	ref_2378_fdr	37	20	37	30	10	27	11	24	15	21
TTTGTATAACGTCTCA	ref_2378_fdr	7	13	10	9	3	10	7	8	7	6
GACCTGAAATTCTAAC	ref_2378_fdr	15	8	26	21	18	16	13	15	5	12
AATTTACGCGCCATAT	ref_2378_fdr	81	36	101	91	36	63	21	82	41	74
GCACATCTTTTGTCGT	ref_2378_fdr	1	1	1	3	6	9	5	11	9	7
TCGACACCCGTTCCTG	ref_2378_fdr	30	18	40	30	17	25	16	22	22	30
GGCGTTGAACGTTAAT	ref_2378_fdr	30	20	25	28	16	30	11	24	14	24
GGACACAGCCACTGCT	ref_2378_fdr	35	14	40	39	16	17	19	24	19	27
CTTTTGCGTGAAGGAC	ref_2378_fdr	35	29	62	55	30	48	24	53	32	41
CGGCTTTCGACTGAAG	ref_2378_fdr	17	21	16	21	13	16	15	33	19	17
GCAACTATGCGCTCGA	ref_2378_fdr	18	11	35	24	12	23	21	21	13	16
TCCCAACTCGAGGTCT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGACAGGAGCGC	ref_2378_fdr	45	29	43	33	19	37	16	38	31	40
TACCTTATTCTATGGG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTACTATAACTT	ref_2378_fdr	11	6	9	11	7	8	7	5	2	13
TACGAAGTGCGTGAAG	ref_2378_fdr	59	34	60	58	31	48	60	40	34	30
CAGATCCGGATCACCA	ref_2378_fdr	25	15	49	32	24	21	18	19	22	25
ATTGCTCCAGGATCGA	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
CGAACTGGCCTTCTGT	ref_2378_fdr	2	6	9	2	15	2	8	2	10	3
AGTTTAACTTTTCCCT	ref_2378_fdr	26	19	37	34	16	37	19	32	11	16
AGACTCTTTAGGCCTC	ref_2378_fdr	26	17	40	35	9	36	17	30	13	21
TTGGCATCTTGGATGT	ref_2378_fdr	17	11	24	19	10	20	13	25	18	22
ATCTTAGCCCCACATA	ref_2378_fdr	187	117	231	235	108	172	125	183	119	189
TGTTGCTTGCCTGGTA	ref_2378_fdr	0	0	0	0	0	0	1	1	0	1
TGAACGGGTTGGTGGT	ref_2378_fdr	90	57	120	101	69	79	59	93	60	90
GGTCCGGTAGCTGTGC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GCACTAGCGTTTATCC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
CATTCATGTTAAGGCC	ref_2378_fdr	170	78	226	166	85	140	92	176	88	164
AGGGGGGCCCTCGTGG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTAACCCCACCCT	ref_2378_fdr	34	16	24	38	11	28	21	27	21	24
TCAATCTTGGCCGTTA	ref_2378_fdr	67	38	76	82	47	84	43	75	32	70
AGTCTGGATTATTTTG	ref_2378_fdr	26	11	37	24	19	40	9	23	12	21
TGACACTATTAGGGGT	ref_2378_fdr	29	24	48	48	28	36	27	55	19	57
TCTTCGTCCTTCGGTT	ref_2378_fdr	22	16	37	33	18	36	25	33	21	35
GATCATTTGGTGATGG	ref_2378_fdr	0	0	0	1	0	2	0	0	0	0
GCGATAGAGCATTGCA	ref_2378_fdr	61	57	80	76	46	65	52	55	63	66
GAAGGCGCTTTCAGAA	ref_2378_fdr	2	2	4	2	1	0	1	5	1	4
CGTCCTGATATCGGCA	ref_2378_fdr	69	41	92	75	43	72	37	82	51	62
TTGGACCTCTACTTTG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTGGGACTGTGG	ref_2378_fdr	15	4	11	9	5	7	6	12	4	9
GCTCACTGTGCTGGGG	ref_2378_fdr	246	135	253	199	173	171	134	206	154	172
TGGCTAGGAGAGTTAT	ref_2378_fdr	39	15	59	52	15	37	25	41	22	36
AAATTTTTCGATAGTT	ref_2378_fdr	33	16	28	22	14	28	13	31	17	23
TTACCCCTAAGAGAAA	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTTGGGCGGTATG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TCCATATGAGCGATTT	ref_2378_fdr	60	34	58	48	29	42	29	40	22	31
TCTTCGGGCTTAGCTC	ref_2378_fdr	17	10	27	25	16	25	17	16	16	25
GGCACTTAGAGAGCAA	ref_2378_fdr	66	56	99	78	37	72	51	74	54	53
CACTATAGTGCCTTAG	ref_2378_fdr	138	81	130	122	68	133	75	104	92	112
GTTTCCGGTGGTTTAC	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
GATGAAGAATATGTAA	ref_2378_fdr	120	54	146	132	56	102	59	115	81	124
AATTTTACGATCTACG	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTTTTGTTGATCC	ref_2378_fdr	10	14	20	12	10	6	10	14	14	14
GACCCTTGAGAGTATT	ref_2378_fdr	16	8	37	20	16	25	15	17	11	15
GTCCATTTTAATCTTT	ref_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCTGGGTTTTAGC	ref_2378_fdr	95	43	102	71	40	78	42	67	46	60
TGGAAGAGAGGGGGAA	ref_2378_fdr	50	35	65	53	38	67	35	47	29	40
CTACATGAATTTAAAA	ref_2378_fdr	52	26	58	52	37	56	37	38	28	53
CCAGAGCGCTACCAAT	ref_2378_fdr	41	18	50	40	18	21	22	33	23	36
TTCTCTGCTAGTGTCT	ref_2378_fdr	59	25	69	70	35	55	38	54	34	45
TCCCTGAATAAGGTCG	ref_666_fdr	8	12	21	13	9	9	7	10	6	7
TAGTTTCGGGCAGTAG	ref_666_fdr	0	0	0	0	0	0	0	0	2	0
GCTGTAAGGATAATCT	ref_666_fdr	14	16	23	19	16	22	14	22	7	17
CGCCTGCAACTTGCTT	ref_666_fdr	8	10	13	8	8	4	5	11	6	5
CTTATCGAGTAGCGGG	ref_666_fdr	10	14	11	18	8	12	9	21	7	9
GGTTGGACACTATTCG	ref_666_fdr	310	239	342	293	249	312	231	248	287	255
ATGATGCTTGCAGCGC	ref_666_fdr	27	25	35	40	28	33	29	37	25	22
TTCTGCCCTTTTTTCG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGGGTTGTTCGTG	ref_666_fdr	1	0	4	1	0	1	3	1	1	2
CCGCAGCACACAGCGA	ref_666_fdr	237	187	340	245	229	217	215	219	237	226
TGGCGGGTTATCCTTT	ref_666_fdr	44	27	40	42	34	28	30	39	28	32
GCATATATGGGTATGC	ref_666_fdr	7	4	6	9	5	8	11	5	7	10
GTATTGTTGGCTGAAC	alt_666_fdr	25	31	22	21	21	27	18	21	26	20
TGCGGGTAACCTACGA	alt_666_fdr	453	376	624	497	424	479	429	461	444	454
ATCGGGGGGCTTCTTG	ref_666_fdr	17	15	24	17	16	18	12	20	18	20
GGTTATCAGTGCAAAC	ref_666_fdr	131	115	160	133	115	136	124	106	109	108
GGTCTGCGTTCTGCCC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
AGCGGGTAACCTACGA	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TTGATTAGCCGTTGCG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
AGTTATCGAGTGCTTC	ref_666_fdr	3	4	6	8	4	3	6	3	4	2
CCGATTAACTGCTGTT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TTCATACAGCTGGACA	ref_666_fdr	18	16	36	34	37	30	32	31	30	24
ACACCTGCGATCCGGC	ref_666_fdr	12	4	11	15	5	8	11	4	7	9
TTTTTGCTGGTCTCGT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGCCTGTTACATC	ref_666_fdr	5	5	9	2	4	5	11	9	4	12
ATGGCCAGTCTTTAAC	ref_666_fdr	9	4	12	11	2	9	17	9	8	4
TTTTTGTCACGTTTCA	ref_666_fdr	41	43	64	45	53	42	54	38	50	46
TATGTACGGCGTACGT	ref_666_fdr	36	26	46	34	35	41	35	33	37	40
TAGCTCGCACACGTCC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAAGCAGAGGTGT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
ATGAAGTTCTTTATGC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTTCTTTGAGTAA	ref_666_fdr	47	29	61	33	33	38	47	27	31	43
TTGCGTCTACTGCGCG	ref_666_fdr	52	50	60	43	55	41	55	55	59	48
GAAAGGTAGCCGTTTA	ref_666_fdr	15	10	20	20	12	10	9	11	11	8
CCCGGCTTATTCGTCC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTCCAGAGCTCAC	ref_666_fdr	47	30	45	33	48	29	33	50	23	46
ACCGGGTTACTGTATC	ref_666_fdr	6	19	9	9	11	8	6	4	23	11
ACACGTCCGTTTGTGT	ref_666_fdr	49	48	44	53	41	48	46	45	55	47
ACGGAGTAACACAGGC	ref_666_fdr	13	11	20	14	14	9	15	7	5	8
GCTTTCGGTTATCTAG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GACCTATTCATGTAGT	ref_666_fdr	653	570	744	632	467	626	609	500	561	541
ACGCATGTCGCAAAAC	ref_666_fdr	3	3	6	0	1	3	1	0	1	2
GAAGAAGACCTCGCAT	ref_666_fdr	16	32	32	24	16	18	20	21	28	27
TGTCGATGTGCAACGT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
CACGAGATTCTGTTCG	ref_666_fdr	75	64	96	110	92	71	79	72	97	83
TGATCAAGCTATCCTG	ref_666_fdr	8	15	18	14	5	10	16	15	16	14
CTGCTCGTGGGTGACT	ref_666_fdr	43	35	49	61	47	50	52	47	49	27
CCTCCCTACAGTCGAT	ref_666_fdr	0	10	3	3	8	0	17	4	3	2
TGCTTATGAACGCCAG	ref_666_fdr	35	15	43	30	28	28	23	19	30	18
TAAATTCTTCAATGTT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCTATACAAGGGC	ref_666_fdr	27	19	32	23	18	19	18	19	15	15
TGTGACTCCCCAGTCC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
CGTATCCTGCATACAG	ref_666_fdr	49	38	61	48	47	63	51	50	50	57
ATCTCGTTTACCCAAC	ref_666_fdr	16	21	22	17	14	16	11	21	10	19
ATTCCATGAGAAGCTG	ref_666_fdr	46	31	59	47	24	40	30	41	17	42
TTTGGCTTCTGACAAC	ref_666_fdr	44	47	47	37	43	25	51	50	53	43
CAATATCAGATGCAAA	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTTCATGCCGGCA	alt_666_fdr	6	4	6	2	10	5	7	1	10	2
TGATTGCGGGTAGAGT	ref_666_fdr	49	40	51	58	43	49	42	54	45	39
AGTGTGGCCTTGAGTC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTGCAGTGATTGT	ref_666_fdr	74	79	89	86	84	72	87	61	87	60
GCCCACATAAAAATAT	alt_666_fdr	52	33	60	49	30	39	32	44	27	34
TTGTGGTATCCTCATC	ref_666_fdr	11	9	26	14	19	16	10	16	15	16
TACGTTCGATCCCGTC	ref_666_fdr	28	95	52	56	114	31	114	35	131	39
AACATCAATTTTTAAG	ref_666_fdr	59	44	64	68	56	65	49	68	47	46
ATACTATCTCATCGCT	ref_666_fdr	415	307	490	448	341	374	364	397	342	382
CCACTCATACATCTTT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
ACGACCAATGGGATTG	ref_666_fdr	59	57	74	69	53	48	55	48	48	46
GGTGGGCACTGCGCCG	ref_666_fdr	22	16	22	11	8	18	9	13	18	20
GAAGATCCGGGTAGTT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TGCATTTTTTCTACAG	ref_666_fdr	6	5	2	5	6	2	1	4	5	1
GTAGAGGGGTTCACCT	ref_666_fdr	28	22	29	32	20	26	21	27	38	25
TACGGGCAGGTACTGA	ref_666_fdr	40	26	44	40	33	34	29	34	28	29
CCTATTGTGTGTCCGC	ref_666_fdr	76	97	114	82	76	89	105	101	105	76
CCGCCTTAAGAGGTTC	ref_666_fdr	5	5	7	11	9	7	8	6	8	6
CTAATGTAGCTTTACT	ref_666_fdr	31	32	35	27	19	27	32	35	27	29
CATTACCACTCATATT	ref_666_fdr	3	4	3	9	9	7	6	7	5	4
TTGCCTACTAGGGCAA	ref_666_fdr	10	13	11	8	4	6	4	6	9	10
GTTAAGGGTCGTCTAC	ref_666_fdr	100	77	146	93	75	100	86	109	86	93
ATATCCTATGCCCCTG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTGCTTGAGCGGC	ref_666_fdr	105	96	136	147	100	107	110	102	96	115
GAAAAAAAAGGTAGCA	alt_666_fdr	62	71	69	64	53	75	71	74	43	58
CCTTGCGGGTAATTTT	ref_666_fdr	122	95	145	121	117	124	127	120	137	110
CGCCACGCTGAGACTG	alt_666_fdr	55	40	71	40	46	52	51	45	60	32
ACGTTTGGTGTACCGT	ref_666_fdr	0	0	1	2	0	0	1	0	0	0
TAATGTTCTGCTGTTT	ref_666_fdr	4	3	7	7	2	7	2	8	6	11
ATTTAGTACTGGAGAG	ref_666_fdr	63	42	42	44	43	58	48	52	56	61
GATGTATACGAGTCTT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGCATTGTTTATT	ref_666_fdr	49	44	47	43	46	36	29	31	54	51
TTTTATTTCTCAGACT	ref_666_fdr	21	15	29	32	15	34	21	15	25	34
GACCTGATTGCCATCT	ref_666_fdr	7	16	19	19	13	18	15	17	11	15
TCTGCTACACAGCTTG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TGTATTTTTCAGCCTT	ref_666_fdr	12	8	10	13	6	6	5	4	5	5
CCGATAAATAGGGCAC	ref_666_fdr	11	2	13	5	18	9	9	5	8	9
ATCCTCTACGCGCGCG	ref_666_fdr	60	31	60	55	32	50	43	38	48	41
GATCATCTCCCCGTTG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCGATATTTATCA	ref_666_fdr	38	22	51	26	37	28	39	35	17	31
GCCCCCGTTATGTAAG	ref_666_fdr	72	57	108	85	57	64	70	69	63	79
AGATCCTGGCCAAACT	ref_666_fdr	3	4	5	3	2	2	2	2	6	4
TAAACGTGGGCCTTTT	ref_666_fdr	4	19	20	9	9	24	9	22	11	12
ACCGTATATTTTGCCG	ref_666_fdr	23	24	31	24	12	26	23	16	13	22
CCGGTCACTAATCGCT	ref_666_fdr	27	51	28	22	37	22	49	23	42	21
AAATAGGCTCTGACCT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGTACCCGGACTG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTGATTAAGCGTC	ref_666_fdr	20	27	18	30	15	20	21	24	26	26
CAGGCTCTTCACTGGC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
CTTGAACGTGTTTCCC	ref_666_fdr	8	9	12	9	4	10	2	7	7	6
CGTCGTCAACTTTCAT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
AGTCATTCGCGCAGGG	ref_666_fdr	27	24	27	34	18	18	15	12	20	30
GGGTCATGCACAAGCG	ref_666_fdr	16	17	34	27	27	19	14	22	12	17
GCGTACGGCATGCAAG	ref_666_fdr	6	4	3	4	2	2	3	3	4	4
TTTGAAGCGTCCTGTA	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GCGTATTCAAGTATTG	ref_666_fdr	29	33	44	25	26	24	14	24	21	20
TTTTGTCATTAACAGC	alt_666_fdr	67	220	117	97	212	89	206	80	200	73
TGTTCCCTCCATGTGT	ref_666_fdr	25	19	23	15	7	15	14	8	21	34
CGAAATTTTTTATCCG	ref_666_fdr	7	7	8	10	6	6	7	8	7	6
GTCAGTATAGGTGTCG	ref_666_fdr	8	9	11	11	15	10	18	5	16	6
ACATTTATCTCGATCG	ref_666_fdr	6	4	13	5	4	7	4	6	9	11
ATTCTTGTTTGATAGT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTTGCACGTAATG	ref_666_fdr	13	18	25	7	19	17	11	18	22	4
TGCGGGTAACCTAAGA	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAATCGGGAGGCC	ref_666_fdr	7	6	14	9	15	9	14	16	5	8
GTTGAAGAATTTTAAC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGCTATCCGTGTC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTTCCTTCAACGC	ref_666_fdr	74	72	88	77	81	63	63	89	80	65
GAACGGTAATTCAGTA	alt_666_fdr	6	20	17	4	18	4	15	4	13	16
CAGAAGCGCAATGTTG	alt_666_fdr	66	116	65	75	122	65	132	70	156	47
TTTCCTTATTAAAGTG	ref_666_fdr	12	19	30	26	14	26	21	20	21	7
TCTGTCTAACACGACT	ref_666_fdr	70	79	81	60	81	45	89	64	78	41
TGTCCGTCATCCATGT	ref_666_fdr	235	207	299	260	198	271	208	212	174	217
GACATGCGCTGAAAAT	alt_666_fdr	106	83	129	116	96	106	92	111	80	119
CTATACGATGACAACG	ref_666_fdr	25	16	25	23	20	31	16	28	28	24
TCATAACTGGTTTACA	ref_666_fdr	82	67	85	79	59	75	60	81	68	59
ATCCTGCGTTGTGCAC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GGACCCAATTACCTGG	alt_666_fdr	9	10	13	8	13	5	11	8	13	3
TGATGTGTACGTGCGT	ref_666_fdr	11	11	20	13	4	17	8	10	18	16
ATCGTCGGGGGCTTAT	alt_666_fdr	6	11	3	6	7	5	16	11	9	7
AGTCGGTGCGCCTTGC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TCGATAACGTGCCCCA	ref_666_fdr	1	2	6	3	2	0	2	6	3	4
AGGTGTCCTTTTCGCA	ref_666_fdr	35	34	50	35	55	54	42	39	40	24
CTGATGCTGGTAGATT	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTTTGCACACGT	ref_666_fdr	56	50	63	52	43	53	42	54	47	41
TCACAGTTATCTCGGG	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
TAATCTAAGCATTCCC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
AGATCTCTAACACATC	alt_666_fdr	36	85	55	46	84	42	115	43	101	41
TCTGTCCCTGTGCAAC	ref_666_fdr	24	19	30	34	21	32	28	22	28	18
AATGTAATCATTTCAC	ref_666_fdr	0	0	0	0	0	0	0	0	0	0
GGCGGTCCCCAATACG	ref_666_fdr	4	4	7	7	6	7	1	0	4	5
AACTGCCCGACCTTGT	ref_666_fdr	7	5	6	4	8	6	8	4	0	2
ATCCGCTTGTGGGATC	ref_666_fdr	8	5	14	6	8	13	7	3	10	1
CATCACCTTGAGACTA	ref_666_fdr	35	23	31	27	24	29	37	26	26	19
AAAGCCACTTGCTTAT	ref_666_fdr	11	8	22	9	11	12	8	17	21	15
TACACGTTCAGGATCA	ref_666_fdr	46	34	48	44	32	39	43	37	35	34
TTATCAGTCTTGCTAT	ref_2031_upstream	33	27	41	29	31	32	41	37	48	30
ACATATCAACGGAACC	ref_2031_upstream	5	2	3	8	3	6	0	3	2	4
TTTCTTTTGCGGTATT	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAGATTCTGTTGA	ref_2031_upstream	85	66	115	98	78	86	105	73	115	77
CGATTAGTTTTACTTT	ref_2031_upstream	280	253	346	263	253	285	262	246	261	233
CGGCCTATTCTCTTCC	ref_2031_upstream	2	11	10	11	7	6	8	8	16	4
GTCTGCTATCAGTCTG	ref_2031_upstream	35	52	55	41	65	53	45	38	52	41
TGAATGTTAACCTTAG	ref_2031_upstream	24	17	31	26	24	23	23	19	26	18
CCCGCAGCTCGTAAAA	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
CATCTCAAGGTGCTGA	ref_2031_upstream	83	92	72	86	111	73	117	65	112	63
TTTAGCTCCCGCGGAC	ref_2031_upstream	18	38	23	30	18	21	28	21	45	20
CACTAACGTCCCGCAT	ref_2031_upstream	11	10	7	21	19	11	4	12	17	11
AACGCTCCGCCCGCTT	ref_2031_upstream	18	24	11	14	15	12	17	14	15	14
CAGACTGGTACCACTA	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
TACCGGACCCGCGTTA	ref_2031_upstream	150	141	189	148	208	152	204	168	173	157
TTGGTTCCAGCTTACC	alt_2031_upstream	6	23	11	16	38	7	29	5	44	6
GGGAATACCATATGGG	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGCTAATGCTGGG	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
AACAGGGTGCGGTAAC	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
CGTAAGTTCTTTACGA	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGGTCAATCGGTG	ref_2031_upstream	34	38	39	35	43	31	31	23	31	24
AGATTGCTTTGGACTC	ref_2031_upstream	34	55	41	45	55	37	58	45	57	43
CTGAGTCGCGCCAATC	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
TGGGACTCGAGTGTTA	ref_2031_upstream	15	9	7	15	14	9	10	14	14	9
CGTATCTGGCATCCGA	ref_2031_upstream	8	5	12	6	4	4	5	5	10	4
TATTATGGAACCGCGG	ref_2031_upstream	59	48	85	68	44	62	59	53	89	50
GATATGACTGACGCCT	ref_2031_upstream	6	9	7	16	5	8	10	5	12	15
GGTTAGCGGTTTTTTG	ref_2031_upstream	75	96	93	71	83	87	66	58	87	70
CTGGGTCGGGAGTGAG	ref_2031_upstream	9	27	14	16	12	13	18	6	16	11
CATCGATTGTCAGATC	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
GACCTAAGGATGCTAC	ref_2031_upstream	7	14	19	18	19	17	12	6	8	8
GTTCTATCGTGTTAGT	alt_2031_upstream	17	26	16	19	26	18	31	14	24	13
ATGCTTGGATCTTGTA	ref_2031_upstream	18	36	22	20	18	30	28	22	26	12
GGAACTTATGTCACCC	ref_2031_upstream	12	18	19	14	20	23	20	10	17	16
CTATTTTGGACTAGGG	ref_2031_upstream	77	74	100	81	67	74	96	74	83	66
TGCCTCGTTCCCCTTG	ref_2031_upstream	2	3	2	5	3	3	2	1	2	2
TTTGTCATCTTCATAA	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
TCCAAATGACAATTTC	ref_2031_upstream	80	78	99	78	81	58	79	69	74	51
GTCTGCGGACTTGAAA	ref_2031_upstream	12	6	11	7	8	1	11	2	9	3
CCCCGTATAAGGCGAA	ref_2031_upstream	84	80	81	84	90	75	88	84	100	85
TCGGACTGATTAAGTC	ref_2031_upstream	30	63	48	41	51	32	64	33	74	40
CTATCAGCCAAAGATT	ref_2031_upstream	13	62	16	17	43	17	43	4	45	11
TCTGCCATTTACTTCC	ref_2031_upstream	14	16	13	10	8	9	15	5	14	7
TCCACGTGCATATATT	ref_2031_upstream	42	57	55	52	41	40	52	40	51	55
CCGCATGGGCGCCAAG	ref_2031_upstream	18	28	25	14	17	22	20	12	13	16
GAATCATCACCCAATA	ref_2031_upstream	17	28	23	16	27	21	25	17	23	16
AACCTCCGTCCACGCT	ref_2031_upstream	3	4	3	5	3	4	7	6	1	1
CTCGCTTGAATTCCAC	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
AAACCTGGGGAAAAAA	ref_2031_upstream	37	36	42	48	41	44	32	35	38	35
AGCTTGTTCTTTGTTG	ref_2031_upstream	32	33	32	26	37	18	30	21	37	21
GAACAGTAGTTCACAT	ref_2031_upstream	35	39	59	24	38	31	45	17	42	27
ACTCCCTTTCGACGTT	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCAGTCTTGGGTT	ref_2031_upstream	3	7	3	1	11	4	13	5	10	1
CGTTCCGGATCTCCCA	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGCTGGCTCGGTT	ref_2031_upstream	14	9	8	8	13	2	15	13	17	6
ATGTCATTTCGCCTCG	ref_2031_upstream	63	87	107	70	90	83	69	59	104	70
TTTCCGTAGTTTTGGG	ref_2031_upstream	26	37	29	25	34	36	48	24	26	18
TGGGCTCCTCACGAAT	ref_2031_upstream	3	5	2	3	0	5	7	8	7	5
ATCCAACTCCTGCGTT	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAAAAACCGCATT	ref_2031_upstream	66	68	99	81	70	75	79	56	80	51
TTTGGACGGGGCTAGG	ref_2031_upstream	0	0	0	0	0	0	0	0	0	0
GGGATCCAGACTAGAC	ref_2031_upstream	16	6	13	11	5	7	21	10	16	10
TTGCGGATGTAAACCC	ref_2031_upstream	65	115	81	86	77	64	115	68	119	66
TGTATGGCATACGCTT	ref_2031_upstream	52	33	29	40	31	35	59	26	54	34
TTGCGAACGCGGACTC	ref_2031_upstream	12	21	9	20	10	18	11	19	13	18
TGGTGTTCGTCACCAT	alt_5875_new	0	0	0	0	0	0	0	0	0	0
CCTCGCTTCTTCACCT	alt_5875_new	4	6	6	2	6	0	5	2	10	1
GAGTATCCGGGTCGCA	alt_5875_new	48	45	52	35	49	46	50	53	70	46
TGCCGTGGGGCTGTTG	alt_5875_new	0	0	0	0	0	0	0	0	0	0
GGGACAGAGACTCGTT	alt_5875_new	73	86	67	63	86	70	97	55	91	56
AGGTCACAAAGATTGT	alt_5875_new	25	59	47	36	50	24	61	42	52	33
CCGCTATCAGCTTAGT	alt_5875_new	18	26	14	16	38	16	26	20	32	7
CCAACAGTCGGTTACG	alt_5875_new	11	14	8	17	12	6	20	4	17	10
TTGCGCGCCCAACATT	alt_5875_new	17	20	25	22	17	17	25	21	25	21
TAAGGTGCTGAGATCC	alt_5875_new	14	39	22	26	27	25	44	19	32	23
GCATCGGGCCGGTACG	alt_5875_new	31	41	44	29	37	21	40	27	38	22
CACCGAGGAGGCGGCG	alt_5875_new	41	61	71	55	86	54	53	51	80	47
TTCTGCATATGGCTTG	alt_5875_new	20	35	36	27	42	31	32	32	49	25
GGATGCGCTACCCGGA	alt_5875_new	6	4	5	2	7	0	4	1	4	2
TGTCTATGCTGGGGCG	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TGAATCGACGATATGT	alt_5875_new	102	115	98	93	119	66	128	94	111	84
ACTCATTCATTGGGTT	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TCCGGGCTAGAATCGC	alt_5875_new	33	59	40	36	43	33	62	32	69	41
GCTTTCTGATCTCAAG	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TACTGACAGTATCCCA	alt_5875_new	0	0	0	0	0	0	0	0	0	0
AGAACCTGTGCAGATT	alt_5875_new	21	42	14	11	28	20	40	11	28	20
TTGACGGCGCCACCTT	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TTATCGCAGAATCTTT	alt_5875_new	19	18	16	18	30	21	23	22	17	17
TTGGCCCGTTGGGATC	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TCGGTGCTAATCCTTA	alt_5875_new	0	0	0	0	0	0	0	0	0	0
GCCGCTCCTGAGTGCC	alt_5875_new	51	75	84	58	87	57	90	44	90	40
CCCTATGTTAGTACGT	alt_5875_new	55	70	62	50	96	50	74	42	77	39
CTATCCTGTAGAGTGG	alt_5875_new	14	22	12	9	19	13	25	22	16	6
TTGTTTTAGTTGAAAA	alt_5875_new	48	48	60	50	66	48	64	38	82	37
ATAATTTAATTAATTT	alt_5875_new	0	0	0	0	0	0	0	0	0	0
CTTGCTAAGTAGTAGT	alt_5875_new	12	35	26	19	37	17	40	27	25	29
ACTCCAGTGAGCACTC	alt_5875_new	0	0	0	0	0	0	0	0	0	0
GGGATGAGGTATTAGG	alt_5875_new	46	62	41	28	50	43	62	43	86	24
TTAAACTCAATTTCCC	alt_5875_new	54	77	69	78	85	56	80	63	77	55
GGCCGCCCAGCTGCAA	alt_5875_new	31	47	55	53	36	44	49	34	54	35
TCGCTTTTAGGTATGC	alt_5875_new	42	77	75	52	63	53	72	56	87	44
GCGAGGCATCTCGGTG	alt_5875_new	16	19	18	13	20	12	37	11	16	11
CCTATAGTTAATGCTT	alt_5875_new	4	16	3	8	8	10	11	6	12	1
CACTTAATGCTGCCCG	alt_5875_new	41	72	45	64	68	37	82	38	74	36
TTATGAGTGTTTATGT	alt_5875_new	21	45	55	24	39	21	60	24	57	20
GGACAAACATCCTCTC	alt_5875_new	16	16	19	14	25	11	29	11	16	7
CATCTATGCGATTATA	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TACCCTTTATCTTTTA	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TTGCTTTGTTATCATC	alt_5875_new	63	81	80	49	95	68	102	46	83	54
AGACTACTTTGGCTCG	alt_5875_new	0	0	0	0	0	0	0	0	0	0
GTCGGAATATTGCTTT	alt_5875_new	59	68	63	51	94	50	100	52	77	34
TTCTCCCGCCTTCCAC	alt_5875_new	32	40	35	26	46	28	51	23	58	22
GGCCCCTCATCTATTC	alt_5875_new	4	14	5	7	21	4	10	6	10	5
GGGGAACGTTACTTTA	alt_5875_new	45	50	57	45	70	36	49	39	76	34
CCCGTACCACATTAGA	alt_5875_new	22	25	14	16	22	14	25	14	41	5
ATCATGGTCCAATGCT	alt_5875_new	1	9	2	6	5	3	4	8	7	2
AGTGAGCCAGAGATGA	alt_5875_new	4	14	15	9	10	11	10	10	17	10
GCTACCGTTCAGTTTC	alt_5875_new	0	0	0	0	0	0	0	0	0	0
GGTAACCTGATACTAA	alt_5875_new	2	7	5	5	9	1	5	4	6	5
CGGTCAATCTCTTCTG	alt_5875_new	20	76	47	27	73	46	70	37	80	29
GTCCAGCGTCAGGTAT	alt_5875_new	114	164	181	139	208	127	174	143	207	123
CTAATCCTTGAGAATA	alt_5875_new	0	0	0	0	0	0	0	0	0	0
GCTCCACTCAGTAGTG	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TTCAGGCACCTATAAT	alt_5875_new	23	35	23	20	44	18	50	12	45	24
CTCTCCGTTTCTCCGT	alt_5875_new	3	12	1	2	5	2	4	2	9	0
GTTATGTGTTGCGCAC	alt_5875_new	2	0	0	0	3	0	0	1	2	0
CTCCTGATCGGCGGGA	alt_5875_new	10	10	11	9	18	9	13	7	10	12
TTTTGCTGGCTCGAGC	alt_5875_new	49	57	50	50	46	46	58	47	70	40
TCTTTCATGGTGAGTT	alt_5875_new	24	25	26	20	29	24	33	20	18	14
CAAGCATGGTCGTTTC	alt_5875_new	0	0	0	0	0	0	0	0	0	0
CAATTTCGTATTAAAC	alt_5875_new	20	17	8	18	18	3	19	10	9	4
AGTAGGTGGGTGAAGG	alt_5875_new	0	0	0	0	0	0	0	0	0	0
ATGCTTATTTTCCATG	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TGCGCATCTATAATCC	alt_5875_new	40	49	51	46	56	39	70	42	64	51
CTACATGATCCGGCAT	alt_5875_new	0	0	0	0	0	0	0	0	0	0
TCTCAGTTCTGACGTA	alt_5875_new	123	147	130	120	153	107	112	122	115	105
CGCCGGGCATCTGCCG	alt_5875_new	44	74	44	58	107	32	86	41	84	47
CTTATGCGGACGTGGT	alt_5875_new	58	81	66	45	89	46	94	48	99	59
ATATGTTAGCCGTGCC	alt_5875_new	0	0	0	0	0	0	0	0	0	0
ACCTGCTTGTTGCCTG	alt_5875_new	36	31	27	19	37	25	34	25	38	34
GATAGAGTGGAATCTC	alt_5875_new	8	22	8	6	10	6	14	9	17	11
TCCTAGACTCTAATTC	alt_5875_new	6	16	8	4	8	7	7	3	12	1
AATTTACCTCCTAATT	alt_5875_new	0	0	0	0	0	0	0	0	0	0
CGGCCACCATCGCTCT	alt_5875_new	0	0	0	0	0	0	0	0	0	0
CTGTTGCTGTGACTTA	alt_5875_new	0	0	0	0	0	0	0	0	0	0
ATTGGCGGTTCCGTAT	ref_3975_fdr	227	63	279	238	67	214	69	227	45	219
TTTGTGGGTTTCTTTA	ref_3975_fdr	290	93	387	351	77	298	88	285	102	274
ACCGCGCTGGCTTTCA	ref_3975_fdr	235	51	276	270	52	206	55	212	62	171
GAATTTGCTATTGCCG	ref_3975_fdr	501	151	678	589	178	533	165	543	139	445
CGTATCAGTCTCCCCC	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCCGTGTTCGAAA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTCTAATCTTGAT	ref_3975_fdr	509	125	606	519	143	465	142	508	121	428
CAGAGCTTAGTCTGGT	ref_3975_fdr	196	72	229	245	86	186	62	179	97	174
CTTGTTGGCGTCACGT	ref_3975_fdr	200	51	225	218	61	161	48	143	47	136
TCAGCAATTTATTCTG	ref_3975_fdr	247	74	306	248	62	222	71	242	85	201
TGTTCTGGCGTTTAGA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
GCGAAGCGTACCTCGT	ref_3975_fdr	335	84	436	350	82	311	91	302	89	291
ACATAACGATTTCTAA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
CAATAAACGACTTTTT	ref_3975_fdr	210	42	242	219	70	196	63	211	62	187
CGTATCAGTCTCCACC	ref_3975_fdr	2051	564	2500	2176	606	1915	611	1810	613	1806
CTGTATACTTACTTTC	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCATAGACGCACC	ref_3975_fdr	43	19	45	50	13	33	12	32	12	28
TCCCATGAATCTTTTG	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGTATTATCCAC	ref_3975_fdr	84	27	117	99	20	94	25	92	38	58
CAGGGTCTTATTAGCC	ref_3975_fdr	408	197	467	415	200	360	194	373	212	307
TCCTGACTCGATCTAC	ref_3975_fdr	724	211	948	819	206	746	231	774	203	652
AATGTCTTAGTGCGCC	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCGGTCGTCCGAA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAACGCCCGACCC	ref_3975_fdr	425	158	535	451	146	439	153	447	186	348
CTCTGCAGCAACTTTA	ref_3975_fdr	182	81	214	226	72	173	82	185	72	119
AGCAAACTTTCCTCGG	ref_3975_fdr	332	113	426	353	72	327	110	304	92	317
CGAACTCTAGAACAGT	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
GCTTGCTCCGTCCTCG	ref_3975_fdr	227	46	273	200	63	163	52	213	68	176
AACCACAAAGCTCGGT	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCTCGTCGGGAGA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
CCCATCTGGAGAATAG	ref_3975_fdr	207	64	253	233	54	186	67	227	71	187
CAGGAACAAAGTCCTC	ref_3975_fdr	345	80	404	338	80	272	78	322	82	275
CCGAAACTTGCCCCTG	ref_3975_fdr	66	23	69	66	26	65	27	67	18	40
TGTCCGCATGGATTCT	ref_3975_fdr	150	27	170	157	32	145	30	122	26	145
TAGGTCGTCAAAATAA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCTTCTCGTAGGC	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTTACATCTAATG	ref_3975_fdr	558	178	721	537	144	517	158	504	169	453
CCTCCTAGGGTTTAGC	ref_3975_fdr	1093	294	1231	1184	324	962	316	973	316	909
TCTCCTATTATTTTGT	ref_3975_fdr	75	10	101	88	15	56	14	70	18	51
ATGCTCGGCTCAACGA	ref_3975_fdr	251	78	344	258	101	231	75	254	75	224
TCTCGGGGTAGGCAAC	ref_3975_fdr	698	231	843	718	225	647	231	632	247	604
CATTTGCACGGTTTTT	ref_3975_fdr	288	98	322	264	78	277	88	269	101	221
AGTCTAACATGAGAGT	ref_3975_fdr	187	68	240	215	66	166	56	180	69	146
TACCAACTATTAATGT	ref_3975_fdr	163	59	165	154	45	132	60	148	66	144
TTTAACGTTCTGCCGG	ref_3975_fdr	188	66	236	205	64	214	55	167	63	182
ACATGTGTGGGCTCCA	ref_3975_fdr	254	59	326	246	65	244	75	227	70	225
GCGTCCTAATACTAGG	ref_3975_fdr	2	1	1	7	2	3	4	6	2	6
TTCGCCCGGCGTTATA	ref_3975_fdr	104	34	118	110	41	87	32	88	31	102
TGCCCTTTAAGAGGTT	ref_3975_fdr	72	19	77	58	21	53	26	61	22	61
ACTCAAGGGTTTTGGG	ref_3975_fdr	224	59	260	211	55	194	66	214	81	176
TAATTATGCTCGATCA	ref_3975_fdr	99	29	104	108	18	110	40	62	29	74
ATAGCTGGATTGTTGG	ref_3975_fdr	231	48	270	250	38	187	51	222	62	216
TTTAGGGTTTTGTGAC	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
CACTAACCTTATGGTG	ref_3975_fdr	19	9	19	20	4	21	5	19	7	15
TATCTGGCGGCAAACG	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
TACCTAATTCTAGATC	ref_3975_fdr	86	31	103	107	37	76	33	82	41	86
CTATAGCGTGCTTGGC	ref_3975_fdr	296	101	378	314	112	278	95	274	112	257
TAAGTACGCCACCATA	ref_3975_fdr	236	71	288	248	53	221	60	224	46	210
CCCCCACAGTACACCT	ref_3975_fdr	57	29	72	92	12	74	18	72	17	62
TCCGTTTCATCTGTCC	ref_3975_fdr	290	84	313	289	95	216	100	281	91	230
GATAACAACTCGTCAG	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGTACCCAAGTGA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGAGCGCATACCT	ref_3975_fdr	833	242	980	940	248	872	278	830	266	690
TGTCCTATTAGTCAGG	ref_3975_fdr	516	109	605	502	154	452	141	449	156	418
ATATTATGTATTGTGT	ref_3975_fdr	2	0	5	4	0	2	0	3	1	3
GCAATGGATTCACAAG	ref_3975_fdr	284	100	429	344	95	303	83	295	73	256
GGACGGTCTCTGGACC	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTAATTCACCCGA	ref_3975_fdr	173	71	215	188	82	146	74	142	75	153
TCGCGAATAGGTCCGA	ref_3975_fdr	68	21	75	54	17	38	19	44	26	51
ATCGTAGGGTAAATAT	ref_3975_fdr	546	151	597	583	109	494	145	443	144	488
TTGGGCTCTCCAACAA	ref_3975_fdr	101	38	135	136	38	119	42	71	33	77
TGTGGAGCGCTCATAA	ref_3975_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCTAGGAATCGTA	alt_1218_RC	23	34	42	23	35	22	53	27	40	30
GCTTCGCCGCTCTATC	alt_1218_RC	7	18	19	15	26	10	24	17	16	2
CCCTTCGTCTATTCTG	alt_1218_RC	13	21	16	9	22	19	16	23	30	8
GTCGGCCTTGGTACCA	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
AGCACAGAGGAATCGT	alt_1218_RC	4	4	3	6	5	7	4	3	4	7
TTCGTCAATCAGTCCT	alt_1218_RC	1	3	2	0	3	2	0	0	7	1
ATAGGTTTATCTCCAC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GCTGCTAGCTGGCTGG	alt_1218_RC	13	22	22	28	31	24	24	18	16	20
AAAGTCGAGTCCCCGC	alt_1218_RC	7	12	5	1	6	6	16	7	10	8
GCGTCTTCTAATTCCC	alt_1218_RC	6	8	8	5	7	4	10	6	9	3
ACCTGCTGTAGTCAAC	alt_1218_RC	2	6	1	1	5	3	2	0	7	2
AAGGCGGTATATTTAC	alt_1218_RC	15	21	23	8	12	12	13	12	21	17
ATCATCTGCCTGTGTG	alt_1218_RC	6	23	8	4	30	8	16	7	11	3
TCCTGTAGGGCCACTT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TTGGTTTCGGACTTCT	alt_1218_RC	15	22	10	17	15	18	26	9	18	9
TCTGGCATGCTTGTCC	alt_1218_RC	6	12	11	6	14	7	7	4	11	3
CTCCACCTTTCCCGAG	alt_1218_RC	8	5	7	12	11	8	6	7	25	6
GAGGCAAAATTTGGCC	alt_1218_RC	10	14	8	10	22	18	17	13	20	15
CTGGATGTGCGGATTG	alt_1218_RC	50	82	63	53	101	47	78	45	69	47
TCTTCCACGGGATTTA	alt_1218_RC	5	20	15	11	11	6	20	7	27	6
AATCTCGTCTGGACCG	alt_1218_RC	4	8	9	11	6	11	6	4	4	7
GCCCTGTCTGCGTGCT	alt_1218_RC	12	12	13	14	24	5	15	13	26	7
GCGTCTTGCAGCGGTT	alt_1218_RC	127	177	132	123	160	130	160	107	196	111
CACATTCTATGTACTC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TTTGTGAATAGTGACT	alt_1218_RC	1	1	4	2	4	3	3	0	3	1
CAGGCTGTACGAGGCC	alt_1218_RC	4	11	8	8	10	4	14	4	3	4
ACAGCTTCTTCGTTCA	alt_1218_RC	4	0	1	2	5	1	1	0	1	0
TGGTGATCGGGGGCGC	alt_1218_RC	15	23	27	25	28	25	17	24	41	11
AAAGTGATTGGAACTC	alt_1218_RC	2	3	2	1	7	0	0	4	2	0
TCTACAACTTTGCATG	alt_1218_RC	13	24	13	19	17	7	19	12	22	22
CAATGTCCAAGCCATT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CATAATCTGGAAATGG	alt_1218_RC	15	20	14	18	22	16	15	13	24	19
TGGCGAATGGATCCTG	alt_1218_RC	42	51	64	49	72	60	72	44	67	50
TCTTCAGTAAGCGTGT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CCCTCTTTCTGACCCT	alt_1218_RC	20	23	14	14	25	28	17	16	34	9
TGACGATGGCGCGACT	alt_1218_RC	8	9	21	10	9	7	19	14	12	10
CGGAGCCAATGCTGCG	alt_1218_RC	48	56	55	29	66	53	53	48	74	42
GTGTTTCGCACTCGCT	alt_1218_RC	24	25	18	23	25	22	32	12	24	15
TGTTTCGCTGTGTATC	alt_1218_RC	42	66	65	36	71	52	72	28	58	31
ATGTCTCAGTACCTCT	alt_1218_RC	13	4	10	15	14	9	14	10	17	8
TGGTATGGGGGGCAAC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTTACCTACTGC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TCGTACCTCAGTCGAG	alt_1218_RC	38	49	52	23	71	42	51	43	50	31
GTCAATTGTCACGAAC	alt_1218_RC	11	17	23	13	24	15	19	13	24	10
TGCAGTCTCGTGAGCG	alt_1218_RC	49	63	55	48	72	40	66	50	43	50
CAATTCACCTCATTTC	alt_1218_RC	120	181	153	127	175	113	162	121	174	123
TGCCGTAACGTCTAAG	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
AACCTAGGGAGGGTTT	alt_1218_RC	124	192	171	153	191	126	215	139	213	129
GCCTGTCTTAAGGACC	alt_1218_RC	32	46	41	36	40	18	35	26	61	27
TCTCAATACCCTTCAC	alt_1218_RC	19	24	19	21	31	21	27	16	32	15
GTTTTTGAAGCATGTA	alt_1218_RC	12	12	16	12	13	14	24	20	21	12
ACGTTATAATGTATTA	alt_1218_RC	7	14	15	8	10	8	9	10	10	9
GAAGGCTGTATCCTTC	alt_1218_RC	11	6	5	6	4	2	7	5	7	2
TTACACCCCACCTTCC	alt_1218_RC	30	45	20	12	25	12	33	10	34	11
ATCCACGATGGAAGTG	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GTAATTAAGATTCCCT	alt_1218_RC	70	77	83	68	89	58	87	69	90	55
GGCAGTCATAACTGCT	alt_1218_RC	6	10	6	3	9	9	6	6	10	6
TCTTTATTTACGGCGG	alt_1218_RC	8	5	12	7	12	7	7	10	12	11
TTGCCTTCTATGTACT	alt_1218_RC	4	10	11	5	12	7	1	3	12	9
CGATGATCTCCCTGAA	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TATGCGTATTCTTCAT	alt_1218_RC	2	7	4	2	6	2	4	4	1	0
TCCGCTCGTGATTTTA	alt_1218_RC	22	24	13	15	18	22	21	17	26	11
CTTGCATTCTGATTTT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CCCGTGGGCGTCAATT	alt_1218_RC	16	22	10	10	25	17	32	12	26	13
GATTTGGCTTCACTGC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CCGGCTACTAAGAACG	alt_1218_RC	2	3	2	6	4	0	3	1	3	1
AGTTTTGGTGCCATTA	alt_1218_RC	6	11	9	9	10	10	12	10	15	13
TCTAGACTACATGAGC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TTTTACCTTAATTCTG	alt_1218_RC	41	46	29	26	41	26	41	31	57	23
CCCTGCCCACCGCCCC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TACGCTTCACGGCTTT	alt_1218_RC	1	4	9	11	7	3	10	3	9	5
AAGATACCCCGTTTGA	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CCGTAAGAGTTCCGCT	alt_1218_RC	3	1	3	0	2	1	1	3	2	0
TAGCTTGCGTGAATTG	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TATGCAGAGCAGATAG	alt_1218_RC	21	24	16	19	19	14	30	13	24	13
CAAATCACCTCATTTC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GAAATCTGCTGTTCTA	alt_1218_RC	23	47	30	24	28	41	44	18	50	32
GTGGTGCACCGAAAGG	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TGGTTATGGGGGTAGC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCTATACAATTA	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GAATAGAGTGATCGTC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CCCTAATCCTGATCGG	alt_1218_RC	43	49	40	44	54	44	66	23	67	29
TCAATCCACTAAGTCG	alt_1218_RC	37	45	36	29	44	38	55	20	49	32
GGATTCCAACTCCAGT	alt_1218_RC	21	10	19	10	7	16	13	17	23	13
TAAATGGGTCTGCGCG	alt_1218_RC	10	13	12	9	10	6	20	4	10	6
CAGTGCTCGCTTACAT	alt_1218_RC	63	112	63	80	89	59	99	62	92	63
CAAGTCTTATTAGAAT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CATGTTCTTAGCTTAC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
ATATCTTTCAAAATTT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GGACCGGCTTATTTGC	alt_1218_RC	4	8	6	2	10	0	10	3	8	2
GCCTTATCAGGACGTT	alt_1218_RC	14	16	9	7	12	5	14	10	15	15
GAGGGATCGCACGTTT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
ACGGGTTATCGGATGC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TATGGCCCATGTATGA	alt_1218_RC	4	15	11	12	16	12	23	12	16	12
GGTTAATTGCGGGGTA	alt_1218_RC	7	11	16	9	22	14	11	12	11	9
TACTTGGGGAATAAAG	alt_1218_RC	11	27	13	17	26	16	16	13	32	15
ATCGTCGCGAATGTTG	alt_1218_RC	10	8	8	8	20	6	23	10	15	9
GCCTTCCTGCTCTACC	alt_1218_RC	11	37	16	15	43	15	38	11	27	14
GCGCTCCATTTCCGTT	alt_1218_RC	15	25	27	15	20	10	16	15	26	21
CTGATTGCCCGTTGAT	alt_1218_RC	9	12	6	12	9	6	16	8	7	10
CCGGGATTAGTGTCTT	alt_1218_RC	29	41	21	23	46	24	41	19	56	16
GTCTAGGGTCGCTGCA	alt_1218_RC	37	50	38	18	35	21	51	32	46	36
TGTGGAAACCTGTGGG	alt_1218_RC	10	16	13	4	11	10	17	12	17	6
GCTTGTCGGCAGGGCT	alt_1218_RC	21	29	28	20	20	25	26	18	30	19
TAACGTCTGGTCCCGT	alt_1218_RC	6	7	8	6	10	6	11	6	12	8
TTTCCCTTTATAACAC	alt_1218_RC	2	5	4	3	5	0	5	1	9	2
GAACGAGAAGGAAACG	alt_1218_RC	20	19	22	21	23	12	32	16	23	21
CGCGGACGCAGGCACT	alt_1218_RC	10	11	8	13	11	10	15	22	16	6
CTGCGATTCAGTATGT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
ATATTCATGGAATCCA	alt_1218_RC	9	9	20	10	18	10	11	12	14	14
AATTCGGGTTCTGTTA	alt_1218_RC	29	40	42	28	40	26	37	29	38	31
ACCTACGGTTTGTACA	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TGGCAGCGTGGATATC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CGATCGGCTCGGATCT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TGGACTGGCAGCTACG	alt_1218_RC	5	7	6	6	9	6	7	6	9	7
GGGCAGCACTAAGCGT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CCAGCCGCGATCAGCA	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GTTATTGTGCGATCGT	alt_1218_RC	18	21	14	13	14	20	21	15	15	20
TGGTGGCTAGGCGGTT	alt_1218_RC	46	48	57	31	53	43	41	45	59	43
GCCTATTCCTAGCTTA	alt_1218_RC	16	32	22	20	35	21	33	29	39	24
CTCATTGTTCCGTTAG	alt_1218_RC	4	15	7	4	7	13	13	6	10	5
ATCTGGTTTCTTGCAT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
TGAATTTCAGTGGTGT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CTATTCACGGGCAGGC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
ATCCGGCCGTAGCACT	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GCCCATAAGAGATTTT	alt_1218_RC	44	65	56	52	57	54	74	40	69	44
ACTGAGGCATGGGTCG	alt_1218_RC	13	21	21	18	25	17	28	13	29	18
CCCTGCGTTTTGTTTG	alt_1218_RC	30	29	53	32	49	36	33	45	45	33
GTAAGCTAAAAGAGCC	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
GAATACATGTTTTGAG	alt_1218_RC	20	18	24	13	24	23	30	16	34	15
TTCGTCTGAGCGTCCG	alt_1218_RC	0	0	0	0	0	0	0	0	0	0
CAGGCCACGCATGGTT	alt_1218_RC	12	35	25	28	49	29	44	13	40	28
TGACATAACCACCTAT	ref_1847_missing	31	16	34	32	33	19	29	24	22	16
ATCTCCATTTTGGGAA	ref_1847_missing	19	15	14	24	18	18	18	19	13	11
ACTCTGCCTCCAGTGT	ref_1847_missing	10	9	8	15	10	8	10	12	15	12
CTAACTATTTTGCTAA	ref_1847_missing	27	38	36	34	38	38	39	27	31	28
GGTTCAAGTTTGTGAA	ref_1847_missing	22	15	30	41	26	24	18	20	31	35
ATAGATTAACAAAGTT	ref_1847_missing	16	14	23	21	12	8	26	17	15	21
TTTTTTTGATTAATAC	ref_1847_missing	30	31	40	37	33	41	45	39	20	32
CTACATAATTCTCTGC	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
TATATCTCGCTATCAG	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
AACTATTAGGGCAAAC	ref_1847_missing	154	110	150	168	105	107	117	147	118	124
ATATGCTGAAACTATT	ref_1847_missing	109	74	123	111	81	96	59	110	65	92
TTCTGTAATTCTGATC	ref_1847_missing	3	7	12	4	6	5	8	14	9	8
TTTCCAATATGGGGTT	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GCTAGGCACAGTCGTC	ref_1847_missing	14	23	22	17	19	14	16	12	24	28
CAAATAGACGGAGCGT	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
TTGGTAGGGCATTCTG	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
AACACTGTCGCCCACT	ref_1847_missing	0	2	4	3	3	1	1	0	1	0
TCTGCCTACTCTTATA	ref_1847_missing	40	37	51	43	42	21	60	42	35	29
ATGTGAGTTTAATTAG	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
ATCCCTACCTTGACGA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GCGGTCACATTTCAGG	ref_1847_missing	9	7	11	9	6	8	11	8	4	6
GTAGACTCGCACTCTT	ref_1847_missing	0	0	1	0	1	0	1	4	0	0
ATCTAGCGGCGCTTTA	ref_1847_missing	35	55	60	49	69	49	71	57	55	51
CCAGCTTGTAGGCCCA	ref_1847_missing	2	15	9	13	9	16	9	10	5	6
GACCTTAACATTGTCG	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
CTGTTCAATAGCGGTT	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
CCACTTCTTGTTGTTC	ref_1847_missing	7	3	13	3	8	3	6	7	5	4
AACGAGGAACTCTAAC	ref_1847_missing	4	10	9	8	6	8	5	3	9	7
GTGTGTGTCCGCCTTC	ref_1847_missing	41	39	66	45	35	43	49	48	31	29
GGCTTGTTTGAGCTAT	ref_1847_missing	8	3	2	7	3	6	6	6	2	7
GCTGGTAATTACTGTA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GTTCCCAGTCCCGTAT	alt_1847_missing	40	29	46	54	45	44	59	49	55	53
AACCCCCCTTCGATGT	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
AAGCATGGGATTCTAG	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GCCATAACACTTTGCA	ref_1847_missing	31	25	29	45	34	37	34	39	34	34
GTCAGATTCCCCCTTC	ref_1847_missing	35	40	52	39	44	30	47	28	41	27
GCTTTTGGCAAGTTCT	ref_1847_missing	7	5	5	5	8	10	11	5	10	5
TTGCTCACCGTCTCCA	ref_1847_missing	14	37	34	32	32	28	55	31	34	20
AGCTGAACGGCCGCTT	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
CCTGTTTAACAGCTTT	ref_1847_missing	20	17	23	16	27	18	11	15	19	8
ATTATGGGAAAGGTTA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GAACAGGATCTAACCA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
CTTATCCTCTAGAACA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
TGTGCTACTTCGGACA	ref_1847_missing	13	11	13	9	9	5	13	16	5	17
TATATCGATGCTGCCC	ref_1847_missing	17	14	21	15	8	9	20	13	20	11
CCATAAGAGCGCTCCT	ref_1847_missing	19	48	25	18	54	21	50	19	49	23
CGGTCCATGTACTACC	ref_1847_missing	0	1	2	0	1	0	2	0	3	1
GACTACTAACTAACGC	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
ACCGCCGTAAATAATA	ref_1847_missing	1	0	2	2	3	3	0	2	9	2
AGAACCTGAATGGTTA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GTCAGGCTTCTTCGTC	ref_1847_missing	10	6	8	12	6	2	8	8	9	6
TCTTCAATTTTACATG	ref_1847_missing	7	11	13	7	7	7	9	10	7	11
TAAACCCCATGCTGTT	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
TTGATTAAGATTCAGT	ref_1847_missing	13	10	25	12	17	11	20	16	19	16
TATTCTACTCACTAAG	ref_1847_missing	37	29	44	30	26	26	46	28	30	33
GATCTTCCTAACGCAG	ref_1847_missing	7	3	5	8	9	5	2	6	5	6
TGCCCGCTAACCTTGA	ref_1847_missing	94	109	105	77	99	72	123	58	110	73
CCCCTCTTAATCACAG	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GTATCTTGATATGTTA	ref_1847_missing	38	45	50	43	44	51	35	39	60	48
ATATCTGTGCATTCAA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
ACTGGCGCTGCTTAAC	ref_1847_missing	10	10	14	8	5	13	6	4	11	11
CTGTGCGTTCGTCTTG	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GGTATGGTCCTGTAAA	ref_1847_missing	0	0	0	0	0	0	0	0	0	0
GAACTTCCGCATGAAA	ref_1847_missing	6	3	3	6	4	2	2	5	3	5
TTAACGCATCATTCGG	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGCGTACACGGAT	ref_3426_reverse	1	1	5	12	2	4	2	2	1	4
ATTCTCTCACTTGTTC	ref_3426_reverse	85	69	74	55	81	59	81	77	64	59
ACGTTTGTAGCGCCGG	ref_3426_reverse	22	33	22	36	34	31	32	20	29	27
GAGAACGGATTTTAGT	ref_3426_reverse	35	44	52	51	42	41	60	35	58	48
CTTGGCTATGAAGATC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GACTTTAAATTATCTC	ref_3426_reverse	9	11	9	4	14	9	7	10	3	4
GGGTGTGTATCGATAG	ref_3426_reverse	20	27	29	18	27	24	15	31	33	19
CATTGACAAGTCTTAG	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TGTATGTGTGTCATTG	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GACTACTGGTCCGGTT	ref_3426_reverse	14	12	14	17	22	15	19	15	13	15
CCACCACGCTCTACCA	ref_3426_reverse	49	65	49	44	61	58	55	60	74	38
TTGTTTTGATCACCGT	ref_3426_reverse	34	27	33	35	32	25	25	19	40	23
TGGTGAGCCATAGTGG	ref_3426_reverse	85	95	108	103	113	79	101	70	123	77
CGCCGGTCCCGTACCA	ref_3426_reverse	15	17	14	17	21	7	22	18	19	20
TCTAGAGCTTTAGTAC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTATCGCGTCCAA	ref_3426_reverse	21	24	25	20	28	14	20	15	25	15
AACAGTTCCTGGCAAT	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCCTAAACATTTG	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TCCTATGCGTAAAACA	ref_3426_reverse	13	8	11	12	25	13	23	9	24	8
AGATGTTTTCTCTATT	ref_3426_reverse	19	18	28	20	20	22	17	15	16	18
CTCCCGCTAGAGAAGT	ref_3426_reverse	188	190	202	183	150	180	163	148	206	133
GGCCTTCTTACGTTGT	ref_3426_reverse	1	4	1	1	2	4	3	1	1	3
GCATCCTATTCTTAAG	ref_3426_reverse	4	11	5	5	11	8	5	4	9	4
CTGTCGCTAACCATTA	ref_3426_reverse	5	9	8	4	12	12	8	11	12	5
CTACGCCAGAGTCAGC	ref_3426_reverse	125	203	179	103	213	140	201	146	210	136
CCTGGGGTTATGTATG	ref_3426_reverse	15	35	29	28	25	15	34	21	40	17
TTCATAATCCAGGCCG	ref_3426_reverse	71	61	70	65	51	71	61	45	79	49
GTTCGGTTATTCTCTG	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCTCGCCGGAAGG	ref_3426_reverse	5	7	25	10	8	11	9	12	14	11
AACTTTTAGCAGCCGT	ref_3426_reverse	15	20	8	12	13	14	18	18	11	24
AGAGTGAATCACGCGA	ref_3426_reverse	38	38	54	27	34	42	31	41	42	47
GCAGCTCAGAGCGAGA	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GCGGATGCTGGGGTAA	ref_3426_reverse	10	12	11	15	12	11	14	15	7	10
CTTCCTGTGACGGTGT	ref_3426_reverse	0	0	0	0	3	0	0	1	1	0
ATGGTGTACCGCCTGT	ref_3426_reverse	26	28	40	45	35	38	28	33	32	27
GTACCTCTGGGCGGTA	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTCGATCAGGTC	ref_3426_reverse	8	3	7	4	2	3	4	3	13	5
GATTTCCGCTAGCCGT	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGGAGGCACCGGA	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
CAAATTTTAGACTTAC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TTCCATGCTCATCGTC	ref_3426_reverse	25	19	24	25	26	11	24	15	30	15
TGTGCGCATGTGAAAG	ref_3426_reverse	23	20	17	23	28	25	34	15	25	11
AGGTTATTCTCTCTAT	ref_3426_reverse	31	25	48	28	39	37	27	32	25	29
CTAAAGGTGAATTAAG	ref_3426_reverse	42	39	68	46	47	48	47	46	53	34
CAGCTGTTCGGAGCCT	ref_3426_reverse	4	10	8	11	10	5	15	17	7	2
CAACAGCGGTATCGAT	ref_3426_reverse	12	12	16	16	11	12	18	15	15	9
ATGTCCTGGCATGATT	ref_3426_reverse	41	30	55	28	36	40	47	39	45	21
CCAACCGCCTTGATTT	ref_3426_reverse	14	19	17	18	23	22	22	12	13	12
TTAGGCACCGTTCGCT	ref_3426_reverse	68	63	91	79	91	76	62	70	82	61
TTTGTTCGCCATCCGA	ref_3426_reverse	5	4	9	6	6	5	8	4	3	6
GACCACTGTGGACGCA	ref_3426_reverse	4	6	7	6	2	7	6	4	6	8
AGCACCGCCATTCTAC	ref_3426_reverse	28	30	41	43	32	37	29	34	28	40
GAATATGTCTGTAACA	ref_3426_reverse	73	59	84	78	62	61	69	78	56	52
TGCTGTTTTGTGGACT	ref_3426_reverse	12	5	19	10	9	9	12	12	11	5
TCTGCTCAGTATGATA	ref_3426_reverse	103	226	130	107	234	100	223	84	244	98
GGGTGGGCATGATCTG	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TGCACCGGCTCCAAGG	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCTCGGTTTCTTG	ref_3426_reverse	34	47	42	51	41	37	42	38	63	24
TCATTCTAGTAAGCCG	alt_3426_reverse	23	20	22	29	19	18	33	27	27	18
ACTTCCAGACCGCAGG	ref_3426_reverse	6	11	16	17	18	5	12	11	12	12
TTCTCGGGTTATATAC	ref_3426_reverse	43	39	35	22	41	28	52	29	38	26
ATTAACTAGCTCGAGT	ref_3426_reverse	8	3	5	5	4	5	8	13	5	1
TGGCAAACATACCTGA	ref_3426_reverse	27	38	41	22	40	26	49	34	59	21
TTGGTCGCTTAACCCT	ref_3426_reverse	2	1	4	3	0	1	2	2	0	1
AGCTACAGACCAGTAC	ref_3426_reverse	11	20	28	22	26	25	28	17	26	20
AACCACATCGATATGG	ref_3426_reverse	10	17	9	12	11	12	18	12	15	6
CTAAAGCCCTTGGAGG	ref_3426_reverse	35	38	37	37	27	30	23	31	39	24
TTAAAATTAATAGCCG	ref_3426_reverse	97	107	145	101	65	104	96	77	124	88
CTTGAGTTTCGGCAGA	ref_3426_reverse	22	11	24	26	13	17	14	22	23	9
TACATCGCGCATTGTT	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTTCACCTTAACC	ref_3426_reverse	42	43	51	54	51	45	71	41	47	52
AATAGGTTATAACGAT	ref_3426_reverse	9	9	10	3	10	3	11	3	7	5
CCAATTTTTCGTGCGT	ref_3426_reverse	32	35	32	26	39	26	52	33	44	26
AGTCAGCTTGGCCAGA	ref_3426_reverse	22	15	25	17	14	19	18	24	20	16
TAGTATCAGTCCGTAT	ref_3426_reverse	5	4	6	7	3	4	2	4	9	1
ACATTTAGTATTTTAA	ref_3426_reverse	17	13	18	14	10	13	6	11	12	5
TATGTGGCCATTATGA	ref_3426_reverse	115	111	113	112	111	92	86	90	102	67
TCCGTTCAGTGCACTC	ref_3426_reverse	10	6	9	3	7	11	19	11	17	6
GAGTAGAAACTCTTAA	ref_3426_reverse	40	52	52	50	51	44	53	44	68	37
CATTATCGCGGGCCTG	ref_3426_reverse	9	12	7	6	11	11	10	10	10	8
CTCAAATGCCTTGGCG	ref_3426_reverse	1	4	12	7	5	3	5	4	3	1
GACGCACGTTATCAGA	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TCACTGTCTTGACAGT	ref_3426_reverse	20	32	28	23	34	21	28	33	35	20
TATATGGTTCAGAATG	ref_3426_reverse	38	16	42	23	22	18	19	22	23	16
CAATGTGCGCTCTATC	ref_3426_reverse	128	136	174	158	133	107	134	124	135	127
GTTGAATCCGCCTCGT	ref_3426_reverse	5	5	5	9	7	4	4	10	7	2
AGGTGTGTCACCACGC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GCTAACCTAAATAATG	ref_3426_reverse	8	11	7	13	12	5	13	8	9	15
GTCGTTTGTCCTTCAA	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
ATGTATCAACTTTCCT	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TGTATGGCCCCCTAGT	ref_3426_reverse	21	32	25	19	10	21	24	20	17	10
GCTATCATTCTAAGGG	ref_3426_reverse	75	97	93	81	74	66	83	66	100	66
GTCATGTTATGTGCTG	ref_3426_reverse	53	61	101	66	95	61	81	71	82	63
GGGTACAATGCACAAG	ref_3426_reverse	17	16	13	18	5	10	14	5	8	17
ATACCTTTATCGGTTA	ref_3426_reverse	31	32	41	27	38	19	26	38	37	33
TAATAGTACGGCTTTG	ref_3426_reverse	1	5	3	2	4	0	3	0	0	0
CCTATAACGCAGTTCC	ref_3426_reverse	39	33	47	64	32	50	53	44	46	33
CCTCCAGGGTTATCAG	ref_3426_reverse	17	13	10	13	13	13	13	11	13	9
CGTCCAACAATACCAT	ref_3426_reverse	17	18	28	12	24	19	25	29	28	13
ATCACCGGACTCTAAT	ref_3426_reverse	24	21	37	19	27	22	21	9	30	23
ACATTTCCAGTCCTGG	ref_3426_reverse	29	31	51	31	31	38	37	38	47	31
TTGTTATGTCTTTAGA	ref_3426_reverse	86	60	101	87	75	65	112	82	104	77
AATCTCTTCAAGTAAT	ref_3426_reverse	11	14	26	23	17	18	16	26	19	21
AGGTGTGTCACCACCT	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
CTCGAATCGCGTATCC	ref_3426_reverse	10	9	10	7	5	5	7	3	3	2
CTTAAAAGTTCTAGAA	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCACTGACCGGTC	ref_3426_reverse	32	17	29	42	22	17	30	31	26	21
TTAGGCGGTCGCAGAT	ref_3426_reverse	49	34	40	50	36	46	34	44	42	35
GTTTTAGGTCTAGTTC	ref_3426_reverse	56	70	53	62	75	87	49	37	83	61
TTATAAGTTGTATGCT	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCTGATTTTGAAC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
TATTTCCTATTACTAT	ref_3426_reverse	19	8	36	26	25	23	21	21	18	15
GATATTTGTTAAGCGC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GCGATCGGGCATGAGC	ref_3426_reverse	12	45	9	11	55	8	35	13	48	6
CTTGCGTTCTCTAATC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGTTCCTGAAGCA	ref_3426_reverse	74	65	66	59	68	55	56	58	59	66
TACTGACTTTCTTTCG	ref_3426_reverse	65	35	81	63	56	41	53	49	56	49
CATAACTGTCTTCATC	ref_3426_reverse	8	9	16	13	8	8	11	9	6	7
GTCCGTTGGTCGCCGC	ref_3426_reverse	0	0	0	0	0	0	0	0	0	0
GCAGCTCAGAGCGTGA	ref_3426_reverse	346	524	477	411	529	364	529	381	531	386
GTAATTGTTTATGGCA	ref_6117_new	15	25	14	8	30	11	19	11	19	9
CACGGTACCGGGATTT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GGATCCAGCACGTATT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
CCGGCTCTACTGTCCG	ref_6117_new	3	12	5	8	16	10	12	3	20	6
TAGGTTTCCCGCCACA	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GACTCGCGCAGGCCTT	ref_6117_new	3	6	4	3	4	4	6	10	11	8
GATTTTCCTTTTCTGT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
AACTTGTGAGTCATTA	ref_6117_new	34	30	26	30	35	26	32	26	48	31
AATGCTTATTCCTTTG	ref_6117_new	1	7	3	3	8	5	3	2	15	0
GTTTGACTTCTGGTGG	ref_6117_new	61	84	72	58	72	66	79	48	94	42
TTCAGAGGGTCTGACG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
CTTATGATCTAGTCGA	ref_6117_new	79	111	100	92	116	76	82	77	127	64
TGATTTTGAAGTTCGT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GCCCTGCAAAGTTGGT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GCTATCAACGATGAGT	ref_6117_new	25	34	22	16	31	17	42	26	33	8
GGTGCTAGTCGTTCTT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
TCAGAAGGCTGACTTC	ref_6117_new	10	26	20	25	33	20	28	25	25	14
GTTTCAGTCCGGTGGC	ref_6117_new	14	13	10	10	16	6	10	8	18	11
CTCTTGCAGTAATGGG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
AAGTGGGTTTGTTACG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GTTTCCTCGTGCGTCG	ref_6117_new	3	3	4	2	3	1	0	4	1	2
TGGAATTTATTTTAAG	ref_6117_new	12	8	9	6	10	6	13	6	3	6
ACCCGGGTTGTTACTT	ref_6117_new	6	11	14	7	9	5	9	6	11	7
CAGGTCATCGCTTTTG	ref_6117_new	42	40	44	34	38	34	64	34	64	33
AATTTCGCTCACATCG	ref_6117_new	137	156	131	129	161	116	171	104	162	82
TTGTCCAGTGGGCTCG	ref_6117_new	5	1	4	4	3	6	5	2	2	1
TCTCTCGCAGAGTGTA	ref_6117_new	14	22	11	15	26	14	21	18	17	12
AGGACAAAGACTTTGA	ref_6117_new	21	35	23	27	31	26	39	15	41	19
TGCCAATTGTTAGTGC	ref_6117_new	42	66	61	49	74	46	84	47	75	38
AGAACAGCTCCATGGT	ref_6117_new	2	0	0	0	1	1	1	0	0	0
TAGGCCTGGTGTGCCA	ref_6117_new	0	0	0	0	0	0	0	0	0	0
TTTTGGTGTACAATGT	ref_6117_new	26	25	27	19	32	19	44	26	43	17
ATTGGGGCCAATGGTT	ref_6117_new	48	65	57	53	59	55	80	48	78	48
GCTTATTTAAGCACTT	ref_6117_new	143	139	170	120	175	125	156	116	159	134
AACGCGCGGGAATTTG	ref_6117_new	64	103	72	65	134	67	124	60	101	63
GAAGCCTCTCGCTCAC	ref_6117_new	17	30	25	22	23	14	33	16	23	15
CGGAACATGGTGGTAC	ref_6117_new	14	17	7	8	22	7	15	3	18	9
CCCAATCCAAATTCCA	ref_6117_new	16	19	17	12	20	14	15	11	32	5
CCCCTGGTTTGAGCTA	ref_6117_new	105	164	132	102	162	94	140	85	152	92
GTCCCTGAGATAAGGG	ref_6117_new	41	75	53	52	54	47	83	42	74	33
GGTTTAGGAATATTAG	ref_6117_new	15	16	15	16	14	10	22	11	14	9
TCACCCCTAGTAATAG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
AGCCTCGTCCATACGT	ref_6117_new	64	83	48	53	112	46	118	67	114	55
ATATCCTCACGAAGCA	ref_6117_new	64	106	98	66	97	59	97	76	110	64
AGTAGTTTGGCGCTTA	ref_6117_new	3	7	8	9	2	7	15	9	12	8
TCGTGCTGGAGCGCGC	ref_6117_new	3	5	2	0	3	2	2	2	0	3
GCAGTCGAATAGTGCG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GTCCCATTAAGGGTAC	ref_6117_new	2	13	6	4	10	4	15	7	13	5
GGGTACGCGCGGGCTG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
TATTTGTGGTCTGGTA	ref_6117_new	1	6	4	0	4	3	0	3	1	4
AATTCACTTAGGTTGG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GGGCCGTGCGAGGCAT	ref_6117_new	44	85	80	52	88	50	84	59	92	47
TATTTACTTTGATGTC	ref_6117_new	25	37	26	22	36	36	33	23	33	26
GATTAGAACGTTTACT	ref_6117_new	21	28	22	12	34	16	19	18	26	27
GCTACGAGTGCGCTGA	ref_6117_new	71	63	54	50	58	61	82	43	72	58
GATTACAGTGACCATC	ref_6117_new	3	9	14	8	7	2	13	8	14	12
GCTCATGGATTCCGGC	ref_6117_new	0	0	0	0	0	0	0	0	0	0
CGTTTTACTAGCCGTG	ref_6117_new	7	10	2	5	12	4	8	2	11	2
CTGCTATATTCACTTG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
TGTGTCAATAACCCCG	ref_6117_new	20	20	21	15	31	11	31	17	20	22
AAGCACTGCCTTGGTG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
AGGTTAGCACTTTGCT	ref_6117_new	7	7	5	7	13	7	14	9	9	3
GACCGAAGGTGAGGAT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
TACGATAATGCCTGTG	ref_6117_new	111	136	107	103	172	98	183	70	123	114
GACGGGGTGCCCTCAT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
CTGTGGCATGCCGTAA	ref_6117_new	20	22	41	24	33	14	18	15	30	25
TCACCGGCTCTAATCC	ref_6117_new	9	30	17	18	36	12	33	12	30	10
CGATGGAGGCTTTCAT	ref_6117_new	2	1	1	5	10	1	7	0	5	1
TTGCTTTCTCACTCGA	ref_6117_new	12	14	12	9	23	14	13	8	21	3
AAATGGGTTAATCAGA	ref_6117_new	0	0	0	0	0	0	0	0	0	0
ATCAGGCGATGTATTG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GCTGTAACCTAGAGGA	ref_6117_new	0	0	0	0	0	0	0	0	0	0
ATCTCCTTAGTCCTTG	ref_6117_new	12	17	16	6	7	5	12	6	30	6
AGGGAGTTTCTAGGGG	ref_6117_new	56	116	82	86	108	59	97	55	107	64
TGCCATTGGCTGCTTG	ref_6117_new	0	0	1	0	1	2	0	2	1	2
CAGGCATTCTGGGACA	ref_6117_new	21	34	28	27	34	22	39	13	22	15
GCCGTTCATATCTATC	ref_6117_new	38	47	27	28	32	14	56	23	57	20
TTGGTTTTAAATTTCG	ref_6117_new	8	16	15	14	8	21	20	6	22	7
GGCACAGTCGTAACCT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
ACGGCCCCCCTAGTAA	ref_6117_new	110	129	106	94	108	100	133	101	140	77
TCAGAAGCTTACCGTC	ref_6117_new	11	6	12	10	13	5	24	8	25	8
GTTCTTTGCGGGATAA	ref_6117_new	0	0	0	0	0	0	0	0	0	0
TTTAGTGTCGGTCTAC	ref_6117_new	0	0	0	0	0	0	0	0	0	0
GTTTTTGGGACATTAG	ref_6117_new	35	65	56	35	64	37	54	28	83	37
AAGATTACGTGTAATC	ref_6117_new	1	7	1	1	5	3	8	0	7	2
TCGTACATTCTGGGCT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
ATTGGGACCCCGAACG	ref_6117_new	60	81	58	66	75	38	79	53	86	67
TCTTTAATCATACTCT	ref_6117_new	0	0	0	0	0	0	0	0	0	0
TTTCGCTATAATTCAT	ref_6117_new	4	1	7	1	6	2	5	3	10	5
TTATTGGTTTGAAACC	ref_6117_new	113	165	115	104	147	107	145	99	176	92
GGTCTCAGGTTATCGT	ref_6117_new	43	62	43	38	54	37	50	42	68	41
AATTGTCCACTCATCA	ref_6117_new	0	0	0	0	0	0	0	0	0	0
CCCTGGCACACATAAT	ref_6117_new	9	17	17	9	15	11	19	10	14	16
AATCGGCGCTCGCACT	ref_6117_new	4	7	7	10	18	8	11	8	8	5
GTTAGCAGTCACGAAC	ref_6117_new	12	31	14	13	13	18	16	6	16	11
TAATAAAACCTGCCTC	ref_6117_new	0	0	0	0	0	0	0	0	0	0
CGGGAAAAGCTCGTAG	ref_6117_new	0	0	0	0	0	0	0	0	0	0
AGGTCAAGCATACGAC	ref_6117_new	2	5	4	2	4	1	1	2	2	4
CCTGCACTTTTCTGGT	ref_6117_new	1	22	2	2	8	1	13	6	21	0
GTTCGTAGGCATTACG	ref_6117_new	22	36	31	33	41	39	50	27	37	31
GGAGGTACGTTAATCC	ref_6117_new	57	62	66	54	73	50	78	67	84	53
TTCTTCTGGAATGATT	ref_6117_new	68	107	100	90	108	87	136	60	119	67
GACACGCCTTATCGTC	ref_6117_new	14	12	4	4	9	12	16	7	14	6
GGCAACTCTTCTTTAC	ref_6117_new	4	11	5	3	13	4	11	8	15	6
CTAGATGTGGGCCGTA	ref_6117_new	0	0	0	0	0	0	0	0	0	0
CGTTTGCAAAAATATC	ref_6117_new	0	0	0	0	0	0	0	0	0	0
ACTCGTATTTGCCAAC	ref_6117_new	5	26	13	11	17	8	22	7	27	11
ACTGGAGGCGGTACAA	ref_3643_fdr	122	119	181	158	108	122	126	110	109	112
CAACTGCCCAGACACC	ref_3643_fdr	0	0	2	6	3	1	0	2	2	0
TCTGCGCTTATATGCT	ref_3643_fdr	21	18	27	34	12	17	11	23	14	25
TGTGCTCATGGTTAAA	ref_3643_fdr	51	44	66	66	38	44	45	57	51	47
ATTCCTAAGGTCGTAC	ref_3643_fdr	48	40	69	58	26	53	33	47	35	48
TTCGCACATAAAGACA	ref_3643_fdr	143	115	162	171	146	124	126	133	130	120
TTCGCCTAATTAATTG	ref_3643_fdr	28	23	21	32	13	35	17	15	22	24
CTCCGGGCGGGTACGT	ref_3643_fdr	7	10	14	8	3	8	5	3	6	9
CCGACCCGATCTTTGG	ref_3643_fdr	18	20	33	28	27	28	39	33	28	25
CGCGCGAACGCATATC	ref_3643_fdr	72	76	80	66	44	73	53	71	56	70
AGCGAGTCCTTAGTGA	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCACTCTACAATT	ref_3643_fdr	20	21	30	28	20	16	25	16	23	22
CTTTCTTTAGCTGGTC	ref_3643_fdr	42	44	55	53	44	42	47	52	47	42
GTATCCCCTCGTCTCC	ref_3643_fdr	15	12	16	18	17	15	22	13	22	14
ACCTCGGGGGTGCAAC	ref_3643_fdr	33	26	54	36	21	43	30	31	36	41
TAACCATGGTCGCTGT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ACGTATAATGTCAAAG	ref_3643_fdr	44	32	63	51	43	56	35	49	52	50
GTAGTGTTATCGTGCG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATAAACGGTCTGGTAT	ref_3643_fdr	25	22	35	22	18	26	24	31	26	24
AACCGTCAACACGTCT	ref_3643_fdr	68	56	73	52	47	48	77	47	58	51
CGGTTCCCTTGGCTTG	ref_3643_fdr	59	62	66	67	55	53	68	60	76	51
CATCGCAACACCCGAT	ref_3643_fdr	6	6	4	10	6	5	7	8	6	11
CCCAGTATATTGTGAA	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TACGTCTCCATGTTCA	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTACAGCAAACTA	ref_3643_fdr	0	0	1	0	0	0	0	3	0	0
GATCAAGCATTACGTT	ref_3643_fdr	13	10	17	21	11	20	14	16	10	12
ATCATGTTATTCTCGA	ref_3643_fdr	45	48	71	53	50	53	37	55	46	63
GAGAACTCTCACCATT	ref_3643_fdr	20	18	21	20	19	28	13	17	9	21
TCGTGCTTTAGGAGCG	ref_3643_fdr	19	9	13	11	9	14	10	13	14	6
AGTCACCTCCCTTGGG	ref_3643_fdr	106	124	129	95	127	88	127	98	107	83
AACCGTCAGCACGTCT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
GGCACACCCCCCTTAA	ref_3643_fdr	2	23	2	3	27	4	17	2	37	5
CACGTAAATCGCCGAT	ref_3643_fdr	6	12	18	11	11	11	10	14	10	8
CGACTTTCGGATCTGC	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATCCATATTTAACCTG	ref_3643_fdr	23	18	30	34	18	20	20	19	22	25
GGATCGCCCAGGTGAT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTTAGACCTGGCG	ref_3643_fdr	57	46	73	64	50	61	48	56	44	64
TGGCCCGTAGGGGGAT	ref_3643_fdr	110	94	134	128	114	126	105	117	118	118
GTTGGGGTCGATGCGG	ref_3643_fdr	175	124	182	179	114	171	133	141	139	157
GCCGCGAAATCATCTT	ref_3643_fdr	118	152	134	150	147	138	195	123	155	99
TCAGGAGCATGCTAAA	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
GCTACTGGTTCCGTGT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCAGTACATAATT	ref_3643_fdr	37	29	52	44	40	47	43	50	25	42
TTCGTTTTGTGTGGTC	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCAATAATGAACC	ref_3643_fdr	33	39	53	49	36	55	43	34	44	43
TAACCTGGCTATATCC	ref_3643_fdr	7	5	8	2	4	1	6	5	3	7
CCAAAGCCCAACGATG	ref_3643_fdr	151	99	159	144	111	123	100	114	135	129
TAACTAATGGGTTTGC	ref_3643_fdr	78	55	103	79	62	69	65	65	56	74
CGATTTGGATCCTATA	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTTCCCTACGATT	ref_3643_fdr	42	15	21	23	24	25	18	13	28	20
ATTTAATTCTTTCGAT	ref_3643_fdr	63	59	85	71	46	55	68	87	59	72
TCTTCCAAGCTAAATG	ref_3643_fdr	19	17	17	18	13	19	12	23	5	10
GGGACTCGACGCCAGT	ref_3643_fdr	33	16	38	23	13	18	19	30	23	23
TTCACGAACACTATAG	ref_3643_fdr	111	84	125	116	72	111	76	101	95	98
CCGCTTTCTGAATACT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGCTGGGATCTCA	ref_3643_fdr	21	21	17	29	17	22	15	19	19	18
TTATCCATCCCTCGAT	ref_3643_fdr	13	6	9	8	10	8	10	8	10	11
GTCCTGGAACGGTGCT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGCGTAAAGGGAG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTCTGTCCTGCCT	ref_3643_fdr	32	26	30	25	23	15	27	27	18	17
GCAATCGGCAACTGCC	ref_3643_fdr	47	53	60	59	31	33	40	38	35	40
AGATGTACTAAATACA	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTCACCTCCTCGGTAG	ref_3643_fdr	33	21	22	29	17	17	16	19	14	20
ACACAAATTATAGTCG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TATAGCATATGGGTTC	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGTTTTCGGGATC	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTCGAGGGAAAACTTG	ref_3643_fdr	42	45	65	57	50	63	34	61	61	52
TGACATCGCTCTTTCG	ref_3643_fdr	47	39	58	59	27	39	35	40	34	49
AGACACCTCCCTTGGG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
CATCCCGCGAGCGGTC	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGTAGGGGATCGC	ref_3643_fdr	19	10	13	13	13	13	7	13	3	12
AAAGGAGCTCCTCGCG	ref_3643_fdr	13	10	3	9	7	9	11	10	14	12
GGGCGGATGGCTCCTT	ref_3643_fdr	56	67	79	47	41	74	48	57	51	54
CGCTATCCGAGAACCG	ref_3643_fdr	20	21	39	34	21	14	24	20	25	30
ACTTTACTTCGTGCAG	ref_3643_fdr	33	21	48	36	23	28	19	42	38	28
TGCCTGAGTGAAGAAT	ref_3643_fdr	14	17	20	20	17	16	16	18	17	28
TTCATATCCGAGTTCT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
AACCTTATGGGAATGT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGTGTGAGGGACT	ref_3643_fdr	5	6	8	6	2	1	2	6	4	5
TTCTGCGTAACGGCAA	ref_3643_fdr	37	23	38	27	12	28	26	16	19	13
TTATCATCAAGCACCC	ref_3643_fdr	9	7	9	11	10	12	9	6	12	10
TCTAGCCCGGCGCAGT	ref_3643_fdr	85	66	83	92	73	65	64	64	72	64
GCGAACACTGGAGGGG	ref_3643_fdr	1	5	4	5	4	4	6	3	5	4
TCATCGAAATAAAGCC	ref_3643_fdr	40	24	54	44	22	38	35	42	32	36
GTACGTAGTGGATACC	ref_3643_fdr	18	19	23	19	27	18	13	16	20	15
GGACTCTTAAGATTCC	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TAACGAGTCTGTTTAT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTGGCTCACTTGG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGGGCCTTGTTGC	ref_3643_fdr	23	19	24	26	14	27	20	31	19	17
TCTCGGTCCATGATCT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
GTACAGCTAAAACAGA	ref_3643_fdr	14	7	10	7	6	9	12	13	3	10
TCCTCAGGCGTTTCCT	ref_3643_fdr	20	27	19	22	26	36	25	26	27	18
TAGGTTTCTTGGCCTA	ref_3643_fdr	16	21	18	11	23	13	16	5	20	10
GCTCCATCACCCGCAT	ref_3643_fdr	51	46	68	53	45	40	56	44	55	37
ACCCACGTTCCGCTAT	ref_3643_fdr	26	37	22	36	33	13	39	24	25	17
TCGGCCCAACTCCTTG	ref_3643_fdr	22	14	33	19	18	21	15	17	19	32
CCACGCTTTCAGGCGA	ref_3643_fdr	71	84	101	83	107	84	97	64	99	69
GCCCAAGTCGTATGGG	ref_3643_fdr	4	4	7	4	4	4	4	5	6	1
CATCTCGTGGGCCCCC	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TATGCAGAGCACTCCG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TGTATAGTCTGCTCGT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
AGATCTTTCTTTTCTT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
CACGAGGGAAAACTTG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGCTTTCTCTCTG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
CTACGATAGTAGGCCC	ref_3643_fdr	0	1	2	2	1	1	2	1	0	4
CTCGTGTTATTTTGCG	ref_3643_fdr	5	11	6	7	13	8	13	11	3	6
AATGCTATGTGCTAAA	ref_3643_fdr	50	43	94	66	59	70	50	73	63	59
ACAGGCTCATCGCCAT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGTCATTGCTGCT	ref_3643_fdr	2	6	12	7	4	6	2	8	5	4
TCTCTATGCGTCGTGA	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
ATATTGGCTCCGTTTC	ref_3643_fdr	96	71	139	105	81	99	71	85	67	101
AACCCTTTTTTGCTGA	ref_3643_fdr	33	25	46	37	22	32	25	34	34	44
CTTGCAAACGAAGTCG	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGTTGCTTCCTTC	ref_3643_fdr	4	21	11	8	17	6	16	11	15	5
ATTTTGAGTACGGCCA	ref_3643_fdr	22	23	29	31	24	21	31	32	24	26
GTCCGGGTTCTTATGC	ref_3643_fdr	24	20	22	30	21	19	22	19	19	12
TGGATACGGAGCACCC	ref_3643_fdr	47	33	67	73	45	55	48	65	43	49
TTGCCTGACTCGTCAT	ref_3643_fdr	13	17	16	17	8	19	21	20	29	6
CTTAACTCTTAAATGA	ref_3643_fdr	20	9	19	22	14	20	10	10	19	15
TCCTGGGAAGGAGGCC	ref_3643_fdr	8	1	9	12	7	3	9	8	4	5
AAAGGTGGCCTATCCC	ref_3643_fdr	5	4	12	1	9	11	6	16	8	13
TCTGCCGGTAACATGT	ref_3643_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAGGTTTAGGGAC	ref_5221_fdr	6	13	7	8	7	1	10	4	10	3
TGTGGGGATTTGCATA	ref_5221_fdr	2	10	5	4	1	4	6	4	4	7
CTCGGTATTGTTGTCG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTACGTCCCAATCAAT	ref_5221_fdr	9	2	5	3	8	1	5	3	4	1
GTCACGCACCCCACTG	ref_5221_fdr	94	95	113	115	116	101	102	92	96	105
ATCAAAAATCGGACCA	ref_5221_fdr	102	119	121	87	90	81	118	69	137	79
TCGCCATCTGTGCCTC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GATATTTTGGCGTATA	ref_5221_fdr	7	11	5	9	9	4	19	3	18	6
CTATTAACCCTATCGA	ref_5221_fdr	7	21	22	17	15	21	20	14	16	13
CCCTGGGCCCTAGAAG	ref_5221_fdr	23	61	63	58	69	51	84	31	63	43
CGATATTCTTTCTATA	ref_5221_fdr	4	12	11	11	9	9	20	5	11	5
CATTGGTACGGATGGG	ref_5221_fdr	7	6	5	7	6	4	8	0	2	9
CGCCACTCAGTGCACG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GACTGCAAACCTGCGG	ref_5221_fdr	4	13	7	4	5	3	9	7	10	1
GCTGAAGAGTTGTATT	ref_5221_fdr	31	44	44	30	44	37	41	31	34	36
GTCCTGCTGCTTGGGT	ref_5221_fdr	43	56	60	39	50	41	73	36	77	32
TTTTGTGTGATCATCG	ref_5221_fdr	9	15	11	7	11	9	17	12	17	10
GATGGTCTGCCCCCGT	ref_5221_fdr	12	10	17	8	10	14	11	8	26	7
CCTGAGTTTGCTCATG	ref_5221_fdr	8	9	11	12	21	4	17	11	24	10
GTGGGAGCTACTAACA	ref_5221_fdr	22	31	21	24	37	27	25	19	22	21
AATCATATTGCCCGAA	ref_5221_fdr	54	57	69	61	58	61	65	51	60	44
GCGTGTTTTCAATAAA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCTAGACATGACG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGACCCCGTTAAG	ref_5221_fdr	50	39	42	43	49	40	41	26	52	27
GTTCATACTCGTAGTC	ref_5221_fdr	6	16	6	12	8	9	11	6	15	10
ATACTGTTCTAGGGGA	ref_5221_fdr	45	40	35	32	63	30	47	39	38	33
GCTTCACTGTCAACAT	ref_5221_fdr	5	4	3	6	5	4	4	2	9	4
TTCTCCGCGCAGCATG	ref_5221_fdr	18	22	15	12	25	12	17	12	12	11
GCCCCTTTGGGGCGAA	ref_5221_fdr	25	21	15	25	30	21	25	19	26	18
AGACTACGGGTGTGAA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CATTGAGTATTTCTAG	ref_5221_fdr	83	97	104	86	104	66	123	85	100	74
CAGTACATCGTGCAAT	ref_5221_fdr	12	45	16	15	52	8	34	10	46	13
CGGTGGTATCTTTGTG	ref_5221_fdr	38	38	36	49	16	31	38	23	32	19
CTATTGGTTTGTTTGT	ref_5221_fdr	2	1	2	0	2	0	0	0	1	0
TTTGTCCTCAATGTGC	ref_5221_fdr	2	3	1	4	3	2	5	0	3	0
GATTCGTAGTTCTGTC	ref_5221_fdr	2	4	2	3	9	3	4	3	7	2
GTAATGCAAAATGCAC	ref_5221_fdr	16	13	17	17	7	3	13	9	20	8
GATAGGTCCCAGTTTT	ref_5221_fdr	17	20	18	23	16	22	44	22	26	14
AATCGGTGGCCAACCC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCAGACCAGATTTGGC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
AATTAGGCGGCCGGCA	ref_5221_fdr	31	33	50	32	27	38	34	43	31	32
GGTCGGGCCAGACTTA	ref_5221_fdr	28	22	38	22	33	22	32	38	49	27
TGTCAGGTCGTCTGGG	ref_5221_fdr	45	61	54	41	68	47	69	39	64	30
GCTTAATGAGTGCTGT	ref_5221_fdr	11	12	9	7	12	8	11	6	14	8
CAGGTGAAGCGGGCTC	ref_5221_fdr	6	6	6	6	4	2	10	1	3	4
CACCGGTAGTGTACTG	ref_5221_fdr	68	248	110	93	262	87	272	82	285	77
TTTTGCGTGGCTATCC	ref_5221_fdr	41	76	97	61	76	61	102	54	84	61
GGGTGTGTCAGTATAG	ref_5221_fdr	56	76	124	65	99	67	110	66	102	57
TCATACCGAATTTAGG	ref_5221_fdr	33	35	24	29	53	27	27	25	33	16
CGCATTAGGTCCTACA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTAAGTAAGCGCA	ref_5221_fdr	2	0	4	0	1	4	3	0	2	1
CTGTTGACTTGTTTTT	ref_5221_fdr	0	0	4	3	0	2	1	0	3	0
TTGTGCCCCACTTTGC	ref_5221_fdr	10	13	15	12	19	10	18	17	19	14
CTCTGGTCCTCCTTTG	ref_5221_fdr	7	18	29	13	19	27	22	22	13	18
CGTTAATACGTCTGTT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCCTCCGTCGTGA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
AATGGGTAATCAGGAG	ref_5221_fdr	9	3	6	10	13	5	9	12	5	7
GGGAATCCTTTAACAT	ref_5221_fdr	4	4	4	8	11	2	8	4	2	3
GTTGGGGAACAGCAGT	ref_5221_fdr	22	39	42	30	38	30	36	28	48	21
AGAGTCTCCCCATGTG	ref_5221_fdr	15	33	9	9	34	8	34	3	36	9
TTTAATCTAGATGGTT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CATCTGTTGTCAAGTA	ref_5221_fdr	32	31	40	26	44	23	44	27	43	23
ATCCTTTGGAATAGAA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTAAACTTTTTGT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGTTTGTAAACTT	ref_5221_fdr	28	44	36	27	32	26	41	20	43	30
GGGCCGCCCAAGACCT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTGAGTTGCTTGA	alt_5221_fdr	57	63	64	56	55	72	63	55	62	41
GCCGCATGTGCTTCCC	ref_5221_fdr	13	13	19	19	23	12	33	14	21	9
CTTCTTGTCGGAATTT	ref_5221_fdr	28	34	20	26	20	25	19	26	26	19
CTGAGAGGACTGTATA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GACGAGGGCTTGAGAG	ref_5221_fdr	9	9	11	3	9	9	8	10	11	11
TGGGCTACCCCTTACG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCCTAGCATAAAT	ref_5221_fdr	5	4	4	5	9	2	6	3	9	3
TACAACGGTCACCATT	ref_5221_fdr	2	5	3	1	3	0	4	2	4	0
TCAGTAATAATTGTAA	ref_5221_fdr	7	12	15	17	12	6	9	4	16	11
GCAGTCGTTGCAAGGA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGGTGTCACTGGC	ref_5221_fdr	10	9	10	6	4	5	10	12	9	9
TGGGTCATTGGATTAT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTATCGTAGGGTCGTT	ref_5221_fdr	12	14	19	15	13	10	13	11	16	3
GTGACTAAGTCTTTTC	ref_5221_fdr	27	30	37	26	31	19	26	24	41	28
TCTAATTCATGCTTGA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCTATGCAGAGAG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTACTCTCGGTTA	ref_5221_fdr	69	77	91	81	95	90	97	75	83	70
CGTCGAGACAGGACCT	ref_5221_fdr	7	12	11	12	21	10	14	3	13	15
CTTTACGACCCTAACT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTTGACCTGGGTTATG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTTTGACTTGCCC	ref_5221_fdr	17	22	37	20	29	23	23	19	37	14
CTTGTCGTTCGAGTCA	ref_5221_fdr	7	7	9	8	13	5	4	6	3	1
TTAATAGACGGTTCTA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CAAATCGTGATGTTGG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCAAATCACGAG	ref_5221_fdr	40	54	67	56	44	50	51	47	61	47
CCCTGAGCCGCTCACC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTCGTACTCACA	ref_5221_fdr	0	8	2	1	1	3	4	4	1	2
GCTAAGACGTCGGATC	ref_5221_fdr	2	2	2	1	1	6	8	2	4	1
AAGCCTCATGTTCCCT	ref_5221_fdr	18	27	26	26	30	25	27	15	39	29
TGGCGACGGCCATACA	ref_5221_fdr	47	35	46	43	36	29	43	27	35	37
TCGTCATCAACAGATC	ref_5221_fdr	4	7	5	3	5	3	3	5	11	3
GCTCTCACTCGTGTTC	ref_5221_fdr	35	30	42	37	48	46	47	31	43	41
CACTTGCAATGAACTA	ref_5221_fdr	11	16	13	8	15	3	11	12	14	12
TCATTGTTACTGAATG	ref_5221_fdr	9	16	11	4	8	2	8	5	7	2
AGGGGAATAATGTATA	ref_5221_fdr	37	34	35	33	51	37	37	18	36	42
AGCGTTTTGATATCTG	ref_5221_fdr	3	6	4	3	5	5	4	0	5	5
CTCCTGAGGATGCAGG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CTCCATTAGGCTTCAA	ref_5221_fdr	5	15	8	5	12	13	4	9	8	13
TGCTTTTTTCAGTCTG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
AGGCCATATCCTCGTT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTGACCGGTTATT	ref_5221_fdr	5	12	16	7	11	14	14	14	15	6
TCGTTGTGATAATATA	ref_5221_fdr	13	24	20	14	29	22	26	20	22	20
GCTCGGTGCATCTAGC	alt_5221_fdr	8	26	22	15	26	9	25	5	29	11
CCTTACTTGCCCTTTT	ref_5221_fdr	12	4	10	6	10	9	6	5	16	10
TTAGTATTTGGTGGAA	ref_5221_fdr	48	52	62	59	56	44	62	58	68	58
GCTTGCGGTGACACTG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGCGTCCAACGA	ref_5221_fdr	5	5	6	5	7	5	12	4	14	10
TTAGCCGTTCGCCTCA	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGTCGTGGCCGTT	ref_5221_fdr	9	16	17	13	19	10	11	9	17	6
ACCGTACCTATTTTGT	ref_5221_fdr	19	25	36	15	26	20	36	20	35	16
GTGTGAATCGTTTGGG	ref_5221_fdr	63	60	100	54	89	70	77	57	95	54
TATGTGCTGGACACGT	ref_5221_fdr	23	24	32	24	25	25	29	31	31	31
GTCATGTACTACACTC	ref_5221_fdr	6	45	6	4	24	2	37	2	36	5
TCTCCCTGCGAGATCT	ref_5221_fdr	6	17	8	6	13	8	12	4	27	6
TGTGAAGTGGACTGGT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCCCCGATTACCC	ref_5221_fdr	1	11	9	4	10	9	13	7	15	3
GTTCCCGCCTCACCGC	ref_5221_fdr	7	4	21	9	16	17	14	16	12	11
ATTGTGCATCCACAGT	ref_5221_fdr	18	17	16	10	13	13	21	7	18	7
GATTAGAGTCACTTCG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCCACATGTGAAG	ref_5221_fdr	6	12	6	5	5	4	1	9	13	3
CCGTCAAGGGACCGAT	ref_5221_fdr	2	6	8	7	0	5	1	6	4	5
CGGATTCTGCGCGCGG	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTGCGTAAGCTCTTTT	ref_5221_fdr	20	27	27	19	18	28	34	36	33	19
ATTTGGTCGTGATCTT	ref_5221_fdr	27	21	33	30	34	20	36	16	30	24
TATCCTTGAAGATTTT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGCTCGGCAAGCC	ref_5221_fdr	18	20	30	26	23	17	33	20	24	21
GTTCTGATCTGGGGGT	ref_5221_fdr	5	9	10	9	8	9	13	9	8	3
ACGCGACTTTTGGTTA	ref_5221_fdr	56	93	87	71	92	75	76	67	89	75
CAAGTTCCGGTAATGG	ref_5221_fdr	21	13	43	31	27	34	26	18	14	26
TTTGGAGCATCTTCAC	ref_5221_fdr	35	42	48	33	37	49	44	33	54	34
CCTCCATCATGGCGTT	ref_5221_fdr	21	16	22	18	24	24	15	17	22	12
CTCCATGCTCAACGCT	ref_5221_fdr	8	7	10	10	11	9	12	5	15	10
AGCTTGTGTGCGAGGC	ref_5221_fdr	12	8	13	18	19	7	19	10	18	14
CACCTTAACAGTCGGC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCACCTCTAGAAC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGGTCGAGCGTCA	ref_5221_fdr	8	23	12	10	23	12	39	22	38	12
GCATCATGTTAGTGGT	ref_5221_fdr	21	29	27	27	24	14	31	16	37	11
TATGTACGACATCTTG	ref_5221_fdr	26	20	42	20	22	25	38	19	25	31
CGCCTCATCTCTCGCT	ref_5221_fdr	16	17	20	27	23	20	23	17	32	22
CAAATCTCGTAACGGA	ref_5221_fdr	78	96	89	85	92	93	85	67	108	78
TACTAGCTTAACCAGG	ref_5221_fdr	87	108	81	72	88	77	98	68	121	74
GCCGCTTCTAGTAATC	ref_5221_fdr	8	9	7	8	10	5	8	9	17	12
GTTATCTGTACCTTGA	ref_5221_fdr	10	12	11	12	15	8	17	8	7	7
TTCTTGGGTAATTTTC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CTCCATACAGCGCTGT	ref_5221_fdr	2	5	3	2	2	1	3	3	6	1
GTTGTTTCTGTTCATC	ref_5221_fdr	20	20	39	23	21	19	31	22	20	22
TAGTGCTAGCCCCAAT	ref_5221_fdr	54	83	80	75	62	66	66	57	71	62
TCAGCTGCATCCCGAT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
CATCTATCCTTGTTCT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAATGGGATGCAA	ref_5221_fdr	70	51	66	46	75	48	80	39	80	63
AAATAAGCCACGCTCC	ref_5221_fdr	9	11	13	7	21	12	19	14	14	11
CTATTACTGCAGCTCC	ref_5221_fdr	94	97	112	80	114	72	105	108	115	62
GGTCATCGGAACTGGC	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGGATATGCGGCA	ref_5221_fdr	6	4	6	5	3	3	3	3	6	4
TTATCCGGTTCTAATT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TATCTGATTATATGGT	ref_5221_fdr	0	0	0	0	0	0	0	0	0	0
TACACGTTGCGAGTAT	ref_5221_fdr	10	17	12	13	16	15	11	15	23	14
TGCACCAAACCTTGTC	ref_5221_fdr	8	15	17	8	13	5	9	8	13	12
CGCTACCACCATCGAA	ref_5221_fdr	29	53	47	32	40	36	55	25	52	31
GGATGTAACAGAACTC	ref_2078_upstream	12	15	7	8	15	8	14	11	12	11
GTTGGGCTGCCAGTAG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGATAATATTTC	ref_2078_upstream	65	82	49	49	74	58	71	45	77	57
TGAGCCGTCACCAAAT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACACTTGGGGTA	ref_2078_upstream	73	80	78	60	89	77	97	77	90	49
GATAGTGTAAGAATTT	ref_2078_upstream	48	82	63	52	74	53	66	41	69	49
CAGCCTCAACGAGGTA	ref_2078_upstream	22	37	20	22	47	17	34	20	45	17
ATCCTTTTTTTTTGTT	ref_2078_upstream	11	19	16	11	17	20	23	17	17	13
GCGTATGGGTACCGAT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTCACTCCGCAGT	ref_2078_upstream	4	5	1	6	11	4	11	4	13	3
TGTTGCTTCTGTGCTG	ref_2078_upstream	31	61	43	32	55	42	62	45	83	40
ATTACGAGCCAGTTCT	ref_2078_upstream	24	17	11	28	23	16	37	22	23	17
CACGCATGATTTCATT	ref_2078_upstream	9	6	12	8	18	20	17	12	15	18
TGGGGGGCTTTCGATT	ref_2078_upstream	8	3	2	9	6	3	4	2	3	3
ATTTGCCTCTTGGGTA	ref_2078_upstream	11	29	22	14	32	11	28	11	34	10
ATCTTGAGTTCTCCCC	ref_2078_upstream	4	38	5	6	48	3	45	2	38	1
AGAGGGTACGATGTCG	ref_2078_upstream	39	68	62	63	61	40	72	58	75	38
CTAATATACGTGCTTG	ref_2078_upstream	2	0	0	0	1	1	2	1	3	0
CAGTGCTTACTCCGGC	ref_2078_upstream	14	40	21	15	48	18	48	26	62	16
GCCTCTCCTGTTTACC	ref_2078_upstream	15	35	18	24	38	12	43	11	40	19
GAACGGATATTAGGTA	ref_2078_upstream	33	52	43	28	49	43	49	34	55	23
TAGTCCACTCTGATTC	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTCTACATGGGTC	ref_2078_upstream	10	8	10	8	11	6	7	10	7	6
GAATTTGGCAAAGTTC	ref_2078_upstream	126	196	136	125	182	112	188	130	207	114
GACTTGCCGGATCTTT	ref_2078_upstream	6	7	11	1	3	5	8	2	11	3
GGATCAAGGTTATGGG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGTACATCAATCG	ref_2078_upstream	57	77	85	57	107	52	98	65	98	56
TCTGTCCATCCCCTTT	ref_2078_upstream	1	10	6	0	5	6	7	10	5	5
AGACACGGACTCCCAG	ref_2078_upstream	14	22	12	26	21	17	15	6	24	23
GTGATCTAGCATTGGT	ref_2078_upstream	18	18	17	8	14	15	19	8	18	12
TTATTGCTCCGATATG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATCAACGTACCG	ref_2078_upstream	10	12	13	12	14	5	7	6	15	5
TGCCAGTGTTATAGTG	ref_2078_upstream	12	15	12	4	15	9	11	8	12	14
CGGTAGTTTTCAACTC	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
CAGAAAATTGCCGAGG	ref_2078_upstream	12	38	30	27	32	28	35	31	35	20
AAGTGTTGTACTTTCT	ref_2078_upstream	13	17	8	8	26	7	26	11	16	9
GTCGGTGAGGTAACGG	ref_2078_upstream	84	110	101	93	106	83	117	112	123	74
GTTCCCTGTTACAGCG	ref_2078_upstream	46	73	53	45	102	46	81	46	70	45
TCGGAAGTGCAACACG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
AACCACCCGACCCGCT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTGATCTTGAGTC	ref_2078_upstream	4	9	7	7	9	9	12	6	9	5
ACGTCCACTTAGATGT	ref_2078_upstream	4	10	2	2	9	3	6	1	5	1
AACGGCGTCGTGTCCC	ref_2078_upstream	1	1	3	1	2	5	2	1	3	0
ACTCGAGCGTACCCCC	ref_2078_upstream	7	13	7	10	15	7	11	8	13	13
AATGTGCTTTGCCAGA	ref_2078_upstream	12	24	17	15	10	6	22	18	19	12
TCGTATGGACTTAAAA	ref_2078_upstream	3	16	7	10	7	7	10	3	18	5
TCTTCTAGAACAGTTG	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CTCCACATAATTGCGC	ref_2078_upstream	1	3	4	0	2	3	5	2	5	1
AACTAAGTAAAAAACG	ref_2078_upstream	17	30	21	12	24	28	32	13	29	22
CCCTTCCTTAGGGGCT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGACAACTTTCGC	ref_2078_upstream	201	207	260	168	222	187	284	157	273	171
GAGGGGTTACTGAACG	ref_2078_upstream	8	12	16	13	14	10	26	10	11	8
CGTCCCCCTGGATATA	ref_2078_upstream	5	7	7	7	18	4	7	3	3	5
CAAGGACTCTGTACAT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGCATCGCGGACA	ref_2078_upstream	46	63	55	45	53	29	74	41	52	40
GAGAACTCATAGCTCG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCTGGTATTTTGA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TACCTACTTTACTATG	ref_2078_upstream	19	34	16	17	33	19	41	10	35	19
CGTTGGCATGTTGCGT	ref_2078_upstream	12	8	9	11	15	4	14	13	12	11
ATACCAGGATATACCC	ref_2078_upstream	43	48	50	43	68	39	49	44	57	32
TCAGCCTCAATGCCCA	ref_2078_upstream	6	87	19	14	82	10	92	5	80	10
AGAATCTCGTACTCAG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
GTATCATGATCACTCC	ref_2078_upstream	35	34	24	25	33	28	38	28	35	22
GGTTCTACGGCGACGG	ref_2078_upstream	7	14	4	13	12	6	8	6	10	7
GCTTTCCGGCAGCTTC	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGCTAACTCTTGA	ref_2078_upstream	42	74	42	35	81	34	47	40	67	32
TCCAGATTTTCAACGT	ref_2078_upstream	9	21	18	14	30	13	39	18	38	16
GTCTTTAGCTAGGACC	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGTTGAGCGTCGT	ref_2078_upstream	7	18	7	14	24	5	35	7	17	9
CTTGGAAATGAATATT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
GCAAATGCCGCTTGCT	ref_2078_upstream	5	1	3	1	3	2	7	3	1	1
CTAATTCCGATTTTAT	ref_2078_upstream	46	30	42	36	45	21	53	29	46	28
TTACTTGTTCGTAATT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TGCAATGCGTGCTATG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACTTGGTCCTGA	ref_2078_upstream	117	194	158	144	215	132	199	127	221	121
CGTACAGGGAAGCCGA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTTTGCGTGATCG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGACGCTACTTCT	ref_2078_upstream	29	47	41	26	46	31	50	23	45	31
GCCCATCCTTTTACCA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TAACTTCTTAGGTCGA	ref_2078_upstream	20	29	14	12	18	15	26	15	30	15
GTTCTCAGCTTATTTA	ref_2078_upstream	0	2	1	0	2	2	5	0	0	1
TTCCCGTTTCTGGTAT	ref_2078_upstream	22	34	15	14	50	18	35	13	43	12
TGGACGAAACGTGTAG	ref_2078_upstream	44	51	50	30	61	32	57	35	49	30
GTTCGCACGGCCCTTC	ref_2078_upstream	5	1	2	5	3	0	5	2	5	1
GTGTTCAGCTTTTATT	ref_2078_upstream	4	5	4	9	4	5	2	4	4	3
GAGGACGTCGTCCCTA	ref_2078_upstream	35	59	53	42	61	33	68	42	69	48
TAGTTGCTCTTCTTCG	ref_2078_upstream	14	24	36	26	19	24	33	13	21	15
TGGATTAGGAACTGCA	ref_2078_upstream	98	87	91	93	94	83	101	71	115	60
CGCATAGTCTTGCTGA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTACACGTCTTCG	ref_2078_upstream	8	16	5	8	12	4	12	4	20	4
GTCAATCTTCTTATTA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TGACTAATAGCCAAGT	ref_2078_upstream	19	30	23	18	25	15	34	18	32	16
GCTGCTGACACTAAAC	ref_2078_upstream	12	25	20	15	16	10	14	9	26	12
ACCATATTTTTATTAT	ref_2078_upstream	4	3	1	1	4	1	3	1	5	4
CGACTTATCGCTTGAA	ref_2078_upstream	17	22	15	14	25	23	26	12	23	12
GCGTTGATCACACGCG	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
GCTATTATTTAGCGGC	ref_2078_upstream	11	16	15	16	17	10	18	8	10	7
CATGAAATTCCCATGG	ref_2078_upstream	8	17	12	17	25	13	25	17	27	8
ATTGGGAATATGCTTA	ref_2078_upstream	14	32	18	18	30	15	29	18	28	18
GATTCCGGTACGATCA	ref_2078_upstream	13	20	24	10	20	24	30	12	30	16
TTTGTCTAGAACAGTT	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGCTCCATACTTT	ref_2078_upstream	18	15	25	22	20	16	33	14	17	20
GGCTAGGGCTGGTCTG	ref_2078_upstream	12	12	18	7	11	13	20	6	22	19
TTCAACTAATCTTGGA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGTTCTACCGCTA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTGGGTAACCTAT	ref_2078_upstream	24	47	24	38	49	31	51	34	41	22
CGCACCTTAACACCTG	ref_2078_upstream	0	1	0	0	0	0	1	1	2	1
TGGTCACAATGAATTT	ref_2078_upstream	24	27	30	18	20	13	30	13	31	13
ATCGAGTTATTGGCCA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
GATTGTACCCATATGA	ref_2078_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAGTCAGAACGGT	ref_2078_upstream	29	26	23	13	22	27	45	17	43	21
TCCCCCACGGCTTTGT	ref_2078_upstream	6	47	4	5	54	13	64	7	54	6
GTCTGTTTAAAGACAA	ref_2078_upstream	22	37	25	13	16	21	28	8	30	13
TGGACTGCTCAGACTC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCGTCGGTTCTAG	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GCCTACAGTCTGGGCA	ref_516_reverse	55	78	53	41	75	44	64	55	98	38
GGCGAGCCAGGGAACT	ref_516_reverse	11	19	25	15	23	16	18	31	32	6
AAATCTCGAGTGGCCG	ref_516_reverse	49	59	71	55	82	51	58	44	72	51
CCTTGAGTTATAGGGA	ref_516_reverse	24	32	33	24	29	27	30	28	33	30
GGTTCTCACGCGGTGG	ref_516_reverse	44	28	48	32	46	33	48	50	37	33
GTTTACCACGTTATTT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTTTCTCTGGTGA	ref_516_reverse	44	66	41	32	65	29	75	33	78	37
ATGACCAGTCCACACA	ref_516_reverse	64	69	74	52	82	62	93	48	83	52
TAAAGACGTTTTCGAC	ref_516_reverse	60	77	78	50	72	74	71	61	67	41
CATCTTGTTTCTGTAC	ref_516_reverse	12	14	14	11	16	14	11	17	13	15
CGCTTATTTTACACAT	ref_516_reverse	19	13	16	18	23	15	38	16	24	28
AAGTCTGGTAAGTGTA	ref_516_reverse	29	31	51	33	41	35	25	33	40	27
CGAGTATATAAATCTC	ref_516_reverse	30	31	17	20	24	20	34	27	24	19
ATCTTACCCTATGATT	ref_516_reverse	0	1	0	1	2	0	1	0	1	1
AGTCTTTACAGCCAAC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
ACAATACAATATAGTT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
AAGAACACGATGTTAG	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TACTCGTAGGCTAAGC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGCACCGCAAGGC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GAGAAATTCTCGCTGG	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GCATTTGAGTGTCGTA	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GATATAACCGTAGTTG	ref_516_reverse	12	9	9	8	14	8	22	9	13	12
TTCACTGTTGATATCT	ref_516_reverse	19	13	23	17	19	10	22	17	21	14
TGTTTATTGAAAGTTC	ref_516_reverse	20	29	25	16	40	39	40	30	25	23
AACGTAGAGTTCTCTT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TACAGGGATACCGTAC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTTGCGCGCTGT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
CATTATCTAGAACAGT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCCCCATTCTAAT	ref_516_reverse	12	19	20	13	20	12	21	23	15	9
TGATAGATCCTTACCA	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GACGACGGGTGACCAG	ref_516_reverse	13	34	26	26	24	32	20	18	18	22
GGGTCGAGTCAGCGTC	ref_516_reverse	0	1	1	0	1	0	0	0	0	0
AACCCCTACATGCGAC	ref_516_reverse	3	2	5	1	5	3	7	4	5	4
CGAGTTTCAGGGCTTA	ref_516_reverse	32	23	29	21	28	20	26	27	38	19
TCCGGCCTGACTCAGA	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TGTAACGTGCGTTGTC	ref_516_reverse	32	46	26	21	58	46	43	19	51	18
CCGGCCGACTATCATT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
CTCAATCGATCGTTTC	ref_516_reverse	13	33	23	17	22	27	30	11	30	16
CTGCGACTTTCCTGTG	ref_516_reverse	59	53	78	56	74	68	73	46	73	50
GCTAAGTTTTGCATCC	ref_516_reverse	6	7	6	1	4	3	2	2	5	5
TTTCACACCTTTCACA	ref_516_reverse	23	38	24	32	35	28	41	16	43	32
TCGTACCAGGAATCCA	ref_516_reverse	15	17	16	18	14	12	21	9	27	17
GCTGTTTGGTGTTATG	ref_516_reverse	3	8	9	3	10	3	9	1	2	4
GAGATGTGGTGTCACG	ref_516_reverse	8	13	15	5	6	9	15	4	11	2
AGTTCGATCGGATCGC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
ATTACCAATTGGATCC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TTACGGCTTTGCATCG	ref_516_reverse	53	90	38	59	82	63	57	51	90	63
AGTCAAATTTATGCTC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAACAACCTTTCT	ref_516_reverse	32	40	22	45	38	31	29	22	61	24
TGACGCCCATGCCTTC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTGTTTTGCAGGA	ref_516_reverse	37	41	47	53	56	40	41	37	58	43
GCATCTACAGAACTAT	ref_516_reverse	10	25	18	17	14	11	23	14	17	13
CATCGTTTTAAGATTG	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGGTGTTTCTAGC	ref_516_reverse	25	32	31	18	32	24	43	28	38	30
GAGGGCCATTGATTGT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCACCCTTTGGCG	ref_516_reverse	35	15	18	24	31	24	33	19	39	17
TCCTGCACAGCCACGA	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAGGCCTTGGTTT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
GTTATCTAGCGCCGTG	ref_516_reverse	73	100	101	63	93	63	69	66	79	56
TGGAAGCATATCGCGT	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
CAGCCAGGTTAACTGA	ref_516_reverse	5	4	7	3	7	10	7	5	7	6
AATTTTTATTGGAATC	ref_516_reverse	63	56	56	54	68	66	59	51	71	43
TTACGCACCCGCATTG	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
ATGGACATGCCTCCGT	ref_516_reverse	17	14	12	15	14	12	17	16	12	13
CTCTGAACCGTTTGCA	ref_516_reverse	13	19	7	5	20	7	15	10	19	9
TGCTTGGTCCAATCAG	ref_516_reverse	6	8	5	8	10	3	9	5	6	6
GATGTCTCCCTTACTC	ref_516_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTCGGTAATAGCA	alt_5931_new	90	176	134	105	200	118	146	106	162	112
TTCTCTTCCTTTGCTG	alt_5931_new	3	10	6	7	8	5	6	6	5	6
TGCGCACTGATGTGTT	alt_5931_new	47	78	61	34	97	54	74	48	84	46
GCGCTAGGTGACTTGC	alt_5931_new	8	9	26	18	16	16	17	16	21	15
TAGGGTGACAGGTGTT	alt_5931_new	1	0	1	3	3	0	2	2	1	2
GCTACCCAGTTCACGG	alt_5931_new	41	64	38	41	60	37	60	34	62	48
GCGAGTGCTGCACAGC	alt_5931_new	51	82	62	55	61	51	92	42	66	40
CAATTCACTTTTTATT	alt_5931_new	237	328	311	266	346	243	358	255	332	246
TCGGCCCATAGATACT	alt_5931_new	49	81	70	49	115	50	97	41	113	35
CCGCCTTTGATGAGCC	alt_5931_new	0	0	0	0	0	0	0	0	0	0
AGGGACCTTGGTCGGT	alt_5931_new	0	0	0	0	0	0	0	0	0	0
CGGCCTTACACTGACG	alt_5931_new	166	263	224	182	310	165	249	152	283	177
GAGCCTTTCCAATGCG	alt_5931_new	44	55	45	52	58	32	56	29	60	32
AGTCCGCCTTACCTGT	alt_5931_new	0	0	0	0	0	0	0	0	0	0
GGTCGCATATTGGTTG	alt_5931_new	6	9	5	13	9	7	13	9	22	8
TAGTATGCCACAAGTC	alt_5931_new	36	74	53	48	66	35	78	42	77	47
ATCGTATGTTCGTTCG	alt_5931_new	0	0	0	0	0	0	0	0	0	0
CTTGCCAGACAGGGCC	alt_5931_new	48	55	33	51	42	35	52	35	42	32
GAACTTGTGTGTTAAT	alt_5931_new	0	0	0	0	0	0	0	0	0	0
TCATGGATATACTCCT	alt_5931_new	1	3	2	1	0	0	1	2	4	0
ACGTAACTCCACTGGC	alt_5931_new	56	86	59	42	73	55	66	41	101	49
GACGGGCTCTAGATAG	alt_5931_new	0	0	0	0	0	0	0	0	0	0
GGTCCAATCGTCGAGC	alt_5931_new	12	25	23	19	21	16	20	22	17	22
TGGTTTTGCCCGGTGC	alt_5931_new	15	18	25	17	28	24	37	23	35	14
ACGAAAATACGTGGTC	alt_5931_new	7	7	3	6	1	4	0	7	4	1
TGCAGCGTTTTGTGAA	alt_5931_new	63	100	84	75	80	64	100	48	80	57
CTCGATCCGTACATGA	alt_5931_new	27	20	27	19	25	14	28	10	34	11
ATTCACCCCTCATGCC	alt_5931_new	6	12	5	6	19	1	19	2	10	6
AGTAATACAGCACGAG	alt_5931_new	0	0	0	0	0	0	0	0	0	0
TTTCAAGTTATGTGAT	alt_5931_new	61	95	50	49	86	65	120	40	118	37
TCTGTTCGGGTCAGAT	alt_5931_new	30	37	39	23	43	23	45	26	35	20
CTCGGAATTTCGGGCA	alt_5931_new	75	107	121	89	101	81	113	84	114	103
AACCCCGGGTGGTGCC	alt_5931_new	31	70	51	45	68	47	85	34	68	47
GCTGCACCACCCTGAG	alt_5931_new	0	0	0	0	0	0	0	0	0	0
GTACAATTGACTCTAA	alt_5931_new	101	165	131	93	145	84	134	101	150	97
AATAACGATTCGCTTT	alt_5931_new	14	11	19	5	13	11	10	10	14	6
TATTTTTGGCTTGCTT	alt_5931_new	9	4	3	1	2	0	5	3	2	1
GGGCCCCTGGCGCGTG	alt_5931_new	0	0	0	0	0	0	0	0	0	0
TCTAGATCAGTTTGTA	alt_5931_new	26	33	43	30	46	26	52	36	54	32
TTTGTACGCATACACG	alt_5931_new	55	75	63	60	69	59	65	53	89	45
CATTAGCTTTCTCCTC	alt_5931_new	4	11	1	2	8	7	6	6	9	3
AACGCCATCCGTTCGG	alt_5931_new	7	16	15	17	21	18	24	14	27	12
CTTTCGAAGATATACA	alt_5931_new	0	0	0	0	0	0	0	0	0	0
CATCGTTGAGATGGTC	alt_5931_new	1	2	2	4	4	4	7	6	6	3
CTCCATAGGGGACGAA	alt_5931_new	15	29	23	18	22	17	32	13	19	15
CCATCAAATCATATGG	alt_5931_new	29	39	35	30	63	36	58	50	60	26
TTTAGGCGACTACTCG	alt_5931_new	0	0	0	0	0	0	0	0	0	0
TGCGGGATGTGTTTAC	alt_5931_new	4	7	0	3	5	5	5	7	1	1
AATGATGCTCTTTATG	alt_5931_new	3	3	5	5	2	2	8	5	9	2
CTAACTGGCCCCAATC	alt_5931_new	0	0	0	0	0	0	0	0	0	0
CACTACCAGTTAATAC	alt_5931_new	0	0	0	0	0	0	0	0	0	0
TAAGTTTCTGCATTTC	alt_5931_new	22	34	26	21	26	23	37	30	23	12
TGAGAAAAGGACCGAC	alt_5931_new	28	44	40	21	43	29	47	41	56	29
GATTCCGTACCATTGC	alt_5931_new	153	182	153	129	161	144	182	132	205	120
CGGGATTGACGCCAGA	alt_5931_new	0	0	0	0	0	0	0	0	0	0
CTTCCTGGCTCTTTCC	alt_5931_new	0	0	0	0	0	0	0	0	0	0
CGTCAGTTCTCGTTTG	alt_5931_new	8	20	14	21	16	13	18	11	17	17
GATCAATTATGCGATT	alt_5931_new	9	17	17	24	29	22	22	19	14	20
GGAATTGTTTGCATTA	alt_5931_new	1	3	5	2	6	6	3	5	5	4
GTTGTTGTCTCCTGCA	alt_5931_new	67	73	94	68	66	81	97	52	105	63
TAGTACGCGGCATAGT	alt_5931_new	19	27	28	31	46	19	38	19	29	21
GGCTTAACCGTGCGCA	alt_5931_new	3	2	1	3	2	1	1	2	1	0
GTCCGTATGGACTACG	alt_5931_new	9	7	7	5	13	5	9	5	6	7
TGGTCCATTTGTATAT	alt_5931_new	19	23	23	16	16	24	37	10	45	15
TCGGGCGTGGCATTAT	alt_5931_new	59	65	88	57	76	65	81	50	62	42
TGCGAAATGATGGGTT	alt_5931_new	0	0	0	0	0	0	0	0	0	0
TTTCAAACACGGATGT	alt_5931_new	31	40	51	44	39	26	39	29	56	35
TACATCGCAAGTGACC	alt_5931_new	41	42	45	39	48	35	53	62	42	44
TCCACCCGGGTAGACC	alt_5931_new	0	0	0	0	0	0	0	0	0	0
GACCCGAGCTTTTGTT	alt_5931_new	27	61	47	52	52	49	49	36	52	37
GGCATTACCGTCAAAG	alt_5931_new	50	45	77	53	82	46	76	44	61	49
AACCGACCTACCTTAT	alt_5931_new	3	16	1	0	28	4	19	7	23	1
ATCGTTTATTTTTGGA	alt_5931_new	106	130	135	95	145	85	121	89	140	86
CGGGTCATACACTAAA	alt_5931_new	82	104	77	80	105	65	121	65	109	49
TCATGGTCTACACTTT	ref_5209_reverse	77	106	84	78	84	59	115	58	122	69
CCGAATCTACTTGTGA	ref_5209_reverse	44	131	45	45	152	32	120	38	133	39
TATAGTTGCCAGTATT	ref_5209_reverse	10	5	11	9	17	11	6	8	13	2
CTTTTCAGTATTGCCC	ref_5209_reverse	38	68	50	36	56	34	64	28	60	29
GACCCTCCGCCTAGGA	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCGGTCTTGTCAC	ref_5209_reverse	10	22	13	10	22	10	20	10	21	17
CTACGCGGAATGATGG	ref_5209_reverse	131	138	114	110	154	92	162	78	146	77
CTTATCCGATCTTTAA	ref_5209_reverse	4	10	7	5	3	3	6	4	5	1
TTCCGCTTAGGCGTAG	ref_5209_reverse	12	32	17	21	21	14	30	16	20	20
AATACTCTTGTATGGG	ref_5209_reverse	23	34	32	21	43	28	39	25	47	28
CGTGGCCCATAAAGAG	ref_5209_reverse	24	34	30	21	40	11	28	23	20	12
CAAAGGCTGGTGAGTG	ref_5209_reverse	70	104	85	89	101	59	128	79	90	82
GAGTTTCCGTTACACC	ref_5209_reverse	21	17	18	12	29	14	26	5	15	7
CCAAGGTTGTACTGTC	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
TGACATTGTATATGCT	ref_5209_reverse	90	100	91	55	136	75	115	89	128	61
GTATCCCTGATCGGTC	ref_5209_reverse	33	45	37	22	41	29	49	27	52	22
TTTAGCACTCAAGGCT	ref_5209_reverse	45	78	45	44	47	42	64	32	101	34
TGCGCTTTTTCAGTTC	ref_5209_reverse	11	32	11	11	27	14	36	15	30	15
ACCCGTTTACTCACAA	ref_5209_reverse	32	34	24	30	57	19	43	13	49	27
GGAATAGCCGTTTTCA	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
GAAGCATTTCTAAGCA	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
CATGCCTTAGACGAGT	ref_5209_reverse	41	65	66	44	66	45	88	38	86	56
GCAGGGTCCAGTGGTA	ref_5209_reverse	21	30	33	20	19	15	26	20	23	13
AAAGTTAACATTGACC	ref_5209_reverse	26	30	22	27	31	30	35	26	48	19
GAGTACAAGTCAGTCT	ref_5209_reverse	45	48	35	29	57	30	70	17	49	40
GTTCACTTTCTTTTTG	ref_5209_reverse	152	161	192	121	139	97	154	107	179	132
TGTAAATCTATCGACA	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
CATGTGAAACATAACT	ref_5209_reverse	20	28	29	39	42	39	26	27	35	28
ATATACCTTCCTGATG	ref_5209_reverse	45	53	24	34	51	28	47	36	43	38
CGGTTATCATATAGAC	ref_5209_reverse	222	313	266	215	313	212	285	182	307	196
GTCCTGCGCAACAGTT	ref_5209_reverse	3	8	3	4	5	2	7	1	6	2
GGTCTTCTCAATTGAC	ref_5209_reverse	212	260	225	243	296	225	350	213	312	206
AGCCTGTGGTATGCTG	ref_5209_reverse	9	10	6	2	8	6	5	5	8	6
GCGGTGCACGTCGGCA	ref_5209_reverse	24	31	39	37	47	29	50	37	41	23
GCCCTCTGTCCGGCGG	ref_5209_reverse	12	27	27	27	33	20	26	22	33	21
TAGGTTTTCCTCGGGC	ref_5209_reverse	60	74	91	76	88	70	90	45	93	70
ACATGCTTCGCTTGGG	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
AATCTCACTGTGCCAT	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCTTTTTTGATGT	ref_5209_reverse	15	14	14	9	9	9	18	6	12	11
TTGTCTGAGTAAGGCT	ref_5209_reverse	28	38	34	21	23	22	30	24	38	16
CACTCCTGCCCTTACG	ref_5209_reverse	25	58	24	18	46	21	55	26	59	16
TTTGGACCTCAATGTT	ref_5209_reverse	107	141	128	110	175	105	158	120	160	95
ACACTATACTCCCATC	ref_5209_reverse	1	9	0	1	6	3	4	1	3	0
TGCGCGTTACGCTAAT	ref_5209_reverse	2	2	5	3	3	4	5	2	10	2
CGGCTTTGCGCACCCT	ref_5209_reverse	50	87	59	48	85	53	68	45	96	51
AGGCTACAATTGTAAA	ref_5209_reverse	51	82	68	54	93	60	98	43	98	54
TTTTTGATACATGTGA	ref_5209_reverse	9	19	8	10	20	11	19	14	20	7
CTGAGTGTCAATGGTA	ref_5209_reverse	5	9	5	6	8	4	8	5	13	5
GTGCGATTGTCATATA	ref_5209_reverse	21	24	18	17	19	10	17	16	43	16
CCGTCCACTAACCTCT	ref_5209_reverse	0	6	5	2	7	2	9	2	10	5
CAAAACCTGTTGCTCC	ref_5209_reverse	96	113	106	126	149	109	148	92	169	107
GATCTCGGCATCAATC	ref_5209_reverse	31	42	37	40	55	22	42	27	44	27
TCCTGGTGGGTGTAAT	ref_5209_reverse	58	85	82	49	126	58	116	57	131	48
CCACTGACGGCACGCT	ref_5209_reverse	10	23	7	9	35	12	26	12	25	10
TCCATCAGCTCTTTTC	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGTGATTGGCCC	ref_5209_reverse	10	10	16	10	6	8	15	9	14	9
AAGTTGGTAGGATCCA	ref_5209_reverse	26	45	55	32	38	31	46	21	50	39
ATTCGGCTCATTCTCT	ref_5209_reverse	30	43	39	20	29	36	38	37	46	40
ATTTGAACGATGTGTT	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
AATTTATAGCTTTCGC	ref_5209_reverse	0	0	0	0	0	0	0	0	2	0
CATCATTTGCTACAAG	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGACCCCGGGGTG	ref_5209_reverse	13	19	14	10	10	15	15	12	22	8
CAACGTCACTTTCGGA	ref_5209_reverse	7	22	9	12	13	5	19	16	28	9
TTCCAACCTACCTTAT	alt_5209_reverse	5	79	21	12	57	5	94	9	72	4
GTTACACGTAAGGTCT	ref_5209_reverse	24	29	21	17	31	15	29	19	27	17
ATCGAGGACGACGGTT	ref_5209_reverse	14	16	16	19	10	17	22	11	20	7
CTTTTGTTGACCATTA	ref_5209_reverse	41	50	67	44	57	48	66	32	62	38
GTTCTTCCGAAACAAC	ref_5209_reverse	36	50	55	29	55	31	35	32	53	38
CTAGCTTTGAGGTAAT	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGTGGAGCCCGTT	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGTCTCATCTGTT	ref_5209_reverse	23	39	34	23	42	22	41	27	34	31
TGTTCACTGGTAGCTT	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCGCATTCGTTTG	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCTCGCTCCTTCC	ref_5209_reverse	5	10	3	2	17	1	9	5	5	5
AATTTATAGCTATCGC	ref_5209_reverse	667	746	801	681	826	645	796	665	821	626
TTCAGACAGAGGATTT	ref_5209_reverse	7	5	7	2	7	6	4	8	8	5
ATCATGCTGTTCGTAT	ref_5209_reverse	1	5	6	1	8	3	11	3	1	5
CCGTGCAGGTTTGACA	ref_5209_reverse	12	16	11	8	17	13	17	14	17	8
TGTACGCGACTATTCC	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGTACGGATTTTC	ref_5209_reverse	41	65	57	65	76	52	94	45	79	48
CTCGGTCATCTATCTC	ref_5209_reverse	52	82	73	88	94	58	79	63	85	60
GACCCTGCTGGATGGT	ref_5209_reverse	0	0	0	0	0	0	0	0	0	0
CCATTGTACATCGGCC	ref_5209_reverse	110	124	123	98	132	111	121	102	139	80
TTATATCATCAGTGCA	alt_1851_upstream	89	64	95	90	78	108	74	97	68	83
TACACTCGTGCTAAAA	alt_1851_upstream	62	58	67	72	56	46	56	67	50	58
ATGCATTAAGGATTAC	alt_1851_upstream	64	35	83	67	37	57	52	73	25	50
GTCGGGTAAAATTGTC	alt_1851_upstream	47	30	82	68	40	56	33	78	31	57
AATCATCGTTTCAAGC	alt_1851_upstream	56	43	79	72	48	65	34	47	48	61
ACTCGTACGTTTGTCA	alt_1851_upstream	42	28	44	31	25	43	25	28	27	35
GTTGGTTTATTCTCCT	alt_1851_upstream	14	8	15	12	5	24	4	9	14	13
CAAATTTATACGTAGA	alt_1851_upstream	18	17	29	19	11	26	8	17	14	16
TTGTTAAACGTTACGG	alt_1851_upstream	32	19	31	31	14	25	15	25	21	15
AATTCGAAAGCCTACT	alt_1851_upstream	5	1	3	2	5	1	2	4	0	5
AGGGAATGTCTGATCT	alt_1851_upstream	50	47	71	86	44	81	50	56	39	59
TTAGGTCTTTATAGCC	alt_1851_upstream	284	190	350	289	191	265	190	309	204	229
TTCGTCGGTTCGAAAG	alt_1851_upstream	58	37	67	45	39	63	50	50	39	46
ACGTATTAGTCTGCTT	alt_1851_upstream	10	12	21	12	11	12	9	10	6	7
GGCAGCAACGTATCTT	alt_1851_upstream	101	42	137	136	61	107	61	101	63	77
TCCTCGTCGCTAGATA	alt_1851_upstream	6	23	7	8	27	7	39	5	32	5
GTCTGGTCTTTAGTGA	alt_1851_upstream	21	8	11	14	9	10	14	14	11	14
TGCCGCCATGTTTTCG	alt_1851_upstream	76	40	112	90	38	68	53	74	43	83
GCTAGGAGCTTATAAC	alt_1851_upstream	20	36	43	24	18	26	23	27	20	25
GTCGCGTTCATGTAGA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
ACCACCGGGCCCATTC	alt_1851_upstream	5	13	6	8	10	4	16	5	19	6
TCCCCGACCTTACAAT	alt_1851_upstream	24	43	30	31	30	14	44	32	27	27
TGCATCTGTTACGGCT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTCTGTGCACGGC	alt_1851_upstream	101	59	147	134	63	88	59	95	51	74
GGTTCGAGTCGGGCTC	alt_1851_upstream	12	6	21	24	7	18	6	13	5	18
GTTAACAGCCGTCCGA	alt_1851_upstream	16	22	32	31	20	18	23	22	16	23
AAACGATGACTCGTGT	alt_1851_upstream	101	40	119	89	44	84	68	99	53	59
GTTTGTAGTTTGACGT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGCTACGGAAATA	alt_1851_upstream	24	22	33	29	17	23	17	26	23	19
GTCAATACTAACTGTG	alt_1851_upstream	36	22	47	36	17	27	22	34	21	31
GCAATTACATTCAGGT	alt_1851_upstream	10	11	18	18	9	15	11	14	9	14
ACATAGCTTGATTTAG	alt_1851_upstream	286	153	353	337	172	277	193	270	171	243
ACGTATAACATCGGCG	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CATCTCGCCTGGCTAG	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
AAATTCAGGAGCCCGC	alt_1851_upstream	60	40	86	80	37	72	42	67	40	72
GCAAAACATCCTCTGT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GCTATTTGGGGCAGAA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CATCAGATAGACGAGG	alt_1851_upstream	134	96	170	165	74	121	78	148	59	130
GACTTCGTCACATGCT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTTCAAACGTCT	alt_1851_upstream	60	41	86	80	41	72	32	77	57	71
TGTACAGATTACTTTC	alt_1851_upstream	1076	600	1260	1134	510	950	592	847	620	937
GCCCCATTGGTGAATT	alt_1851_upstream	22	24	30	29	20	24	8	20	22	18
CGGTCCTGGAATAGAA	alt_1851_upstream	51	32	55	50	31	54	27	39	35	41
AGCCCATTGCGAGGTC	alt_1851_upstream	29	18	42	37	25	31	24	38	26	21
AGTCCCAAGGCAGTGT	alt_1851_upstream	23	10	18	15	9	16	15	15	10	15
TGTTTGTCGTGTAGTA	alt_1851_upstream	27	15	48	34	15	28	11	31	17	33
AATGAGCAGAAGTGTA	alt_1851_upstream	22	11	14	19	14	20	9	15	9	15
TGAACAGATTACTTTC	alt_1851_upstream	0	0	1	0	0	0	0	0	0	0
GTGTCCGTGGTGATGC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCGCCGAACTTGC	alt_1851_upstream	103	85	152	118	79	106	105	78	109	121
TCAAGAATGACAGACC	alt_1851_upstream	11	7	7	13	5	12	3	12	13	12
TTTTTATGAATATGTA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTTACTGAGGCT	alt_1851_upstream	29	13	27	26	24	20	14	27	13	14
CATTATGTTGTCCGCG	alt_1851_upstream	25	30	36	29	28	24	30	30	22	39
GACCCTGCGCCCCTTG	alt_1851_upstream	12	10	12	9	10	14	11	3	0	5
CGTTACAGCCTGAGCT	alt_1851_upstream	90	64	96	85	58	79	51	87	67	67
CCCACCTCTGACTCAA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CATGTCCGCTTCGGGC	alt_1851_upstream	26	17	51	31	14	19	18	29	16	31
GCTCCATAGCTCGAGA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GTGCAACTCCAAATTA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCAAATGCACTTC	alt_1851_upstream	6	6	4	6	2	9	8	8	3	6
ATCGTAGTGTTGCACG	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGTTATAGTCTC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
AACTCGCGCGCTTCGA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CAGACTACAAGGAACA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CGATTAATCTGAGCGT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAGGAACTTCGGA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTGATAATCTGAC	alt_1851_upstream	6	4	10	10	5	7	4	10	6	9
TACACTGTCCTTAACT	alt_1851_upstream	12	13	18	11	12	12	11	4	8	12
GTGGCACACTCGTGAG	alt_1851_upstream	40	41	67	56	38	33	37	45	30	44
TCCCATATGTGTGAGA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGATCTTGTGCTC	alt_1851_upstream	144	68	167	146	83	119	82	126	100	128
AATGCTCTATTGACAG	alt_1851_upstream	104	67	171	114	77	125	77	135	61	100
TATGCTGACAGTGTCA	alt_1851_upstream	10	3	10	4	6	10	13	4	2	8
CGTTATGACTGTCAAT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GAAATACCTGATAGCG	alt_1851_upstream	6	2	11	9	1	11	3	7	4	8
CATTTGTGACCGCAAT	alt_1851_upstream	26	22	44	30	27	32	24	25	25	23
TATCACGATGGGCCGA	alt_1851_upstream	343	177	370	316	176	295	190	284	172	272
CATTGCGCAACAGTGG	alt_1851_upstream	2	13	7	8	16	2	11	3	7	4
CTGAAGTCAGGAACCT	alt_1851_upstream	2	2	3	1	2	2	1	4	4	8
GTCTAAGAATTCTTCG	alt_1851_upstream	32	30	52	37	15	38	20	29	27	32
GTTTCTGAATCTGTTC	alt_1851_upstream	5	3	2	2	2	2	1	1	4	1
CGCTAGTCCTGAGCCC	alt_1851_upstream	37	23	31	30	18	23	7	25	15	29
GTGTCGAGGGTCTCCC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTTAACATTTAGG	alt_1851_upstream	129	78	133	138	85	113	84	108	67	101
CCGTCTGGGCGCCCTT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCATCCAAACTGC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTAGTATGTTTGT	alt_1851_upstream	30	16	37	19	26	23	21	14	19	27
TTAATGAAGGCTCACT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAGAATTTCTTTC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCTTGCAGGCTGG	alt_1851_upstream	64	39	69	72	35	54	38	47	39	38
TTGGATACTGAGCTTC	alt_1851_upstream	194	107	215	208	106	170	129	159	111	151
TTACGAGCAGCCCCTG	alt_1851_upstream	99	50	118	126	75	84	61	86	56	72
ATATACGCTCGATGCG	alt_1851_upstream	18	8	19	16	8	13	6	9	7	11
GTAACAGGCCTTTCAA	alt_1851_upstream	3	0	5	6	0	1	1	1	1	0
TTCTCCATGCTAGTAT	alt_1851_upstream	112	80	115	87	64	119	62	82	56	83
GGTTTAAGCCCGATCC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
TATGGTCCGGCTATTA	alt_1851_upstream	31	18	20	24	16	30	16	22	19	23
TGCTCGCACAGATTCA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GCGCACCTGTGGCAAA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
TTATTTCCTGGCGTCA	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
AGACACTAGAGCGTTT	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTGGACCTGCCAG	alt_1851_upstream	36	21	33	36	28	29	23	37	22	19
TAATGGAGGTATGTTT	alt_1851_upstream	74	57	101	102	50	95	81	92	56	71
CCGCTTATTAAACTCG	alt_1851_upstream	9	11	12	10	7	20	17	16	4	13
GCATTTTCTCTGCCGC	alt_1851_upstream	97	66	121	97	72	123	71	93	52	88
TACGGTATTGGCTATA	alt_1851_upstream	57	44	56	50	48	59	41	61	33	45
GAATTAAGATTACGTT	alt_1851_upstream	137	88	153	163	86	119	92	110	114	126
ATACTCGAACTTAAGT	alt_1851_upstream	14	18	34	25	17	19	13	25	19	31
GGATCAGCCTAACAGC	alt_1851_upstream	239	172	282	268	179	215	184	220	156	205
GCCTTTATCAGGGGTT	alt_1851_upstream	205	128	266	240	133	164	146	186	128	184
CGACTCCGTGTGTTCA	alt_1851_upstream	19	14	18	20	14	14	10	17	14	16
TGTTATAAGGCTGTCA	alt_1851_upstream	41	39	59	48	32	45	32	51	25	45
ACACCCCGAGGTCTTC	alt_1851_upstream	184	130	200	204	121	151	128	154	148	142
AGACCTATCTTTGCAC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTCAACATTACA	alt_1851_upstream	22	7	16	9	7	11	17	9	13	6
GTTCTCACTTCCGGTC	alt_1851_upstream	23	17	25	15	12	13	18	20	19	15
AGTACAGATTACTTTC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGAAGAGTTACTC	alt_1851_upstream	0	0	0	0	0	0	0	0	0	0
CAAGATGCTCAGGGCG	alt_5712_new	11	17	18	21	21	15	18	20	27	13
CGTTTGGTCTAGATTC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CTATTCGTGGGATCAT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
GGTGTCATCGCTCATC	alt_5712_new	12	17	19	19	14	15	21	10	15	16
GGCGGTCTCAATATGA	alt_5712_new	48	63	47	40	58	43	69	31	64	37
CAAATCCGGTCGGAGC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TTACCCGACCCTACAT	alt_5712_new	0	8	0	2	3	0	4	2	4	0
ACAATTTGGGAGCTCG	alt_5712_new	0	0	0	0	0	0	0	0	0	0
ATTGGCATTGAAATGA	alt_5712_new	39	58	50	59	69	36	57	46	68	44
TTGGGCTCCAGGGTCG	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CCACCTGCTATTCTTC	alt_5712_new	18	44	27	28	38	21	47	29	50	18
ACAGCACTGCGGTCAA	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CAGCATTTTTGGACAA	alt_5712_new	0	0	0	0	0	0	0	0	0	0
ACTACTGGCGACTGTT	alt_5712_new	16	15	11	8	22	12	24	12	29	19
TTACTGGTTGGGCTAA	alt_5712_new	8	15	19	15	31	14	22	13	22	14
CTGCTTTACGGTCGCC	alt_5712_new	43	66	55	50	76	43	104	54	89	53
ACCGTCTATCGTTCGA	alt_5712_new	11	17	6	2	21	9	13	6	21	7
CCCCCGCATGCTCTGA	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CTTTACTGGGAGATCA	alt_5712_new	108	202	156	162	196	96	209	112	229	106
GCTATCGCTGGTTCCT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TCCGCTGTCCTCCGTC	alt_5712_new	17	29	19	11	26	13	40	7	24	11
GGCGTAATATCGGCTT	alt_5712_new	33	48	30	26	41	21	33	33	44	36
GGGGCCAGATATCGCA	alt_5712_new	7	5	4	5	9	5	8	10	12	3
TCCTTCTGATCTTGGG	alt_5712_new	3	9	2	2	1	1	15	1	8	5
CGCGACCCCATCGTTT	alt_5712_new	17	29	24	17	37	25	25	19	42	19
TATCCTCACGCAGTGT	alt_5712_new	53	73	47	65	83	43	107	55	71	35
GCCCATGCCCTATTGC	alt_5712_new	43	100	69	44	89	46	110	46	112	46
TCTGCCCGCTTGCTAA	alt_5712_new	6	9	7	8	6	11	12	8	5	11
TGACATTGAGTGTTTT	alt_5712_new	6	7	3	5	12	4	17	3	3	4
ATAGGTAGGGACTGAG	alt_5712_new	30	60	40	42	56	38	66	30	84	34
ATCAAGCATCGATGAT	alt_5712_new	19	33	39	24	26	23	47	17	32	15
GTCGCGCACAAAGGAA	alt_5712_new	67	108	69	57	119	54	101	56	123	78
AGTAGGTATTCAGCGT	alt_5712_new	16	28	20	12	24	20	20	13	25	18
TCACACGGCGAGCCGC	alt_5712_new	27	50	19	15	49	19	33	13	40	23
AGTCCTTCTGAGAGGG	alt_5712_new	0	4	3	0	3	3	2	2	2	0
CTCTCCAATTTCAATA	alt_5712_new	8	19	5	5	10	3	22	4	16	4
CGCCTTGTCAGTCCGG	alt_5712_new	15	25	14	5	29	8	20	11	27	17
CGGTATTATTCCGTAT	alt_5712_new	2	2	0	1	2	2	5	2	1	0
ATTACCTCGTATGCTC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
GTATAGCTTCGGTATC	alt_5712_new	37	68	43	35	61	25	66	37	71	44
GGTGACGTAATCGGAG	alt_5712_new	31	53	41	36	40	39	55	40	50	23
CAACCTGACGGGATTT	alt_5712_new	3	14	6	7	16	5	20	4	14	7
TCCTTTGTGTGATTAA	alt_5712_new	2	5	9	1	9	6	2	1	4	1
TTGTCTCCTCGAGTCT	alt_5712_new	15	23	11	10	12	7	16	4	19	14
AGTGCCGGACATCCAT	alt_5712_new	20	34	31	23	46	20	52	14	29	31
CGCGGTTTGTTTGATT	alt_5712_new	10	15	10	5	13	6	16	3	8	8
GTGCCATTTGGGGTTA	alt_5712_new	0	0	0	0	0	0	0	0	0	0
ATTAATTTATACCAAC	alt_5712_new	2	4	8	7	6	5	10	3	8	3
CATCAGTCTTCTATGG	alt_5712_new	10	18	16	13	37	9	19	12	22	8
TAGGCCCCAAATGCCC	alt_5712_new	20	17	30	14	30	14	36	18	23	22
ATCCCTAAGGAACGGG	alt_5712_new	22	11	27	19	14	29	13	21	11	24
CGAGTGGGAAGGACGC	alt_5712_new	36	44	28	34	57	33	53	39	59	40
TTGGGCAAACGGAATT	alt_5712_new	31	71	49	45	64	35	83	33	77	27
CATCATCAGGCACGTT	alt_5712_new	3	6	6	2	5	5	6	0	5	2
CCTCTCAGCGGTATCC	alt_5712_new	26	34	25	16	26	30	27	23	37	18
GATCATATTTGCGTAG	alt_5712_new	1	4	3	1	9	4	4	1	7	0
CTGGCCCCCACGATCG	alt_5712_new	35	25	29	15	23	18	29	10	41	19
TTCATCTTTGCCGGCG	alt_5712_new	16	19	13	19	30	17	15	13	35	8
ACGTGATATGTCGGGT	alt_5712_new	49	77	74	50	110	41	84	61	115	54
GAGTGTGTAGCTGGTT	alt_5712_new	15	30	20	20	27	12	40	14	33	11
AGACGTTCTTTCATGG	alt_5712_new	19	35	22	28	37	26	41	26	48	22
TGCCAATTTAACTGTC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
ATCGCGCTGCCTATCC	alt_5712_new	26	30	10	15	29	21	22	13	34	14
CATGTTGTGGTGTTCC	alt_5712_new	69	123	83	74	103	66	115	70	102	67
CTCGTGCGTGCAGCAT	alt_5712_new	14	22	8	18	21	16	34	24	16	16
TTATTGTATCGGGTTT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
GTGGAACATATGCGTC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TAAGGTCGTCGCGAGA	alt_5712_new	52	93	58	41	73	36	88	52	105	35
TATTACTAATAAGTGG	alt_5712_new	12	44	20	23	33	29	28	16	28	26
TAGCTCCCCCTGGCAT	alt_5712_new	10	25	9	6	22	13	27	5	33	15
TTGGCGGTCCTGATAT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CAAAATAGTTATGACC	alt_5712_new	48	100	50	50	91	41	74	55	98	40
CTTTCAGTGTGATTAG	alt_5712_new	41	74	50	45	103	45	76	40	102	27
CTGATCATTCGTTCAG	alt_5712_new	5	20	9	9	17	11	19	11	21	3
GAGCCTCTGAGCAGCA	alt_5712_new	9	14	11	8	10	4	15	12	16	7
ATTAATCATTCGTGCG	alt_5712_new	111	191	133	115	159	118	209	97	188	93
TGCGTTTAGTGTAAGT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
GTTCCGATATGCATCT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TTGCCAAATCCCTAGC	alt_5712_new	35	55	52	40	62	34	63	32	82	40
TCTTTAGCCCTAGATC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TGTTGGGCGGCGGTTC	alt_5712_new	1	5	2	2	1	0	2	3	4	3
GTGTACTATTTCCCCG	alt_5712_new	13	43	18	19	38	11	50	19	45	15
GTATGCGGCCTGGAGG	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TGCTTCGATCATCTAT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TACACCTAGTACTTAA	alt_5712_new	1	5	1	2	6	4	4	1	3	3
ATCAATGTGCGATGCT	alt_5712_new	17	32	33	13	43	15	38	22	26	12
ATCCGGTCGTCCTAAA	alt_5712_new	11	23	6	4	25	7	36	3	34	4
CAGAGTTTTGTGAATT	alt_5712_new	11	31	10	11	21	11	22	11	32	10
GGGATATTGGTCTACC	alt_5712_new	10	20	16	19	25	11	31	21	20	20
CGACTGACCCATGGTT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CTTAACGTCCTCACGG	alt_5712_new	4	13	11	8	9	12	28	7	15	3
CCTTGACTAGCGGCCA	alt_5712_new	26	51	36	21	43	36	49	21	54	21
CGTTCTTGTTCTTGGG	alt_5712_new	0	0	0	0	0	0	0	0	0	0
GGCAAACAGTTGTTCG	alt_5712_new	225	321	206	189	377	198	351	164	384	182
GTTGTCGAGACGCCGC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CCTTATCTAAAATGTT	alt_5712_new	33	56	42	26	60	32	52	28	68	28
TAGCCCGGATTACTTG	alt_5712_new	18	48	25	21	47	30	41	17	59	18
ATTCTCAGGTCAAGCG	alt_5712_new	55	73	67	48	68	51	95	58	86	56
CGCCCCCGAGCCACCC	alt_5712_new	0	0	0	0	0	0	0	0	0	0
ACGATCTATTGGTCTG	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TGCCTACTAACGCTTC	alt_5712_new	1	5	4	2	7	3	12	5	13	4
CACTTTTTAGTTAATT	alt_5712_new	0	0	0	0	0	0	0	0	0	0
TGTGACTCCTTTTGCG	alt_5712_new	0	0	0	0	0	0	0	0	0	0
CTGCAGTCTGAAATGC	alt_5694_new	8	15	10	10	12	8	14	8	13	2
TGTTTGCATGTGGAGT	alt_5694_new	31	70	45	30	62	39	50	37	64	35
ATAAGGATATCGAGTT	alt_5694_new	3	10	7	6	12	3	4	6	19	3
CACGCTGCAGCATTCA	alt_5694_new	24	35	18	18	27	17	23	16	31	12
GGTTCCGTTTCTTGTT	alt_5694_new	65	93	86	65	87	58	94	65	94	70
ACCCTTTTTGGTCGCA	alt_5694_new	8	15	20	9	18	8	19	10	14	10
CCGGATATAGTCTCAG	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GGTAGTTGATTTAGTT	alt_5694_new	7	25	12	11	16	12	18	6	17	11
CCTGTTTCTTCTGCCC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TCAGTTCAGACACTAA	alt_5694_new	12	36	34	13	37	18	33	12	41	18
ACACGGACACGCCCTA	alt_5694_new	84	108	104	72	139	71	130	59	154	63
GTAGCAACGAGTATTA	alt_5694_new	0	1	0	0	1	0	0	0	0	0
GTCATTTCTGGTGAGG	alt_5694_new	3	4	5	8	3	6	2	7	5	2
CTCGTTGCAGTAGTTC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TTAGGCATTTTGCCAC	alt_5694_new	6	25	14	9	29	5	19	6	20	10
CACCGCTGTTTAGTTC	alt_5694_new	55	84	73	53	93	58	100	54	100	67
AGAGTCGAGGGGTGAG	alt_5694_new	13	17	10	8	22	25	30	13	26	18
CGAACGTTACATTCCC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TGAATCCATTTCAAGG	alt_5694_new	0	0	0	0	0	0	0	0	0	0
AGCGGGTTTGTGGAGG	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TTTGATCTCCGGTTGG	alt_5694_new	6	6	11	7	9	1	12	5	9	4
GTCGAGTGACGTCGGC	alt_5694_new	37	58	33	38	64	36	56	25	56	26
CTTAATGTCCCTCGAA	alt_5694_new	6	34	8	8	16	9	9	5	16	10
TTGACTTTCTCTTTAC	alt_5694_new	10	8	14	10	10	12	21	10	28	10
CGTTGGATCCCAGACA	alt_5694_new	19	36	37	25	32	36	47	17	39	20
TTTTCTGAGCCAAACA	alt_5694_new	23	39	34	26	56	26	45	17	39	25
TTGGGAAGGTTTGCGC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
CTTCGGTGAAGACCCT	alt_5694_new	0	2	1	3	0	4	1	5	8	2
CCCTCCCGACAATTCA	alt_5694_new	67	96	68	64	94	46	125	57	131	62
CCAGCGCGCTCCTCAG	alt_5694_new	5	52	3	5	71	3	52	6	46	5
GTATTCACTCCTACCC	alt_5694_new	12	27	3	13	21	11	23	8	12	11
CCAGCACCAGCGGAGG	alt_5694_new	63	220	86	79	243	66	249	71	282	71
TTGGAAAGCTCGGTGA	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GTTGGAGCAGGCACCG	alt_5694_new	159	212	208	172	243	163	270	184	244	168
ATTTTTTAGTTCCTGT	alt_5694_new	13	10	15	7	16	5	21	7	15	10
GCATAACACTATATCT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
CGAGTGTGCGACCATG	alt_5694_new	13	20	14	10	17	10	32	22	18	10
CCGCACTAACTGGTTA	alt_5694_new	4	15	9	6	16	8	15	5	15	2
GCGGAGACTTAGCTTC	alt_5694_new	9	23	15	15	26	13	30	12	21	4
GTCAGCGAGTCGCCGA	alt_5694_new	7	8	6	7	17	6	9	9	13	5
CACGGCATGCCGAATC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TTTCCCCACTCCGTTT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
CACTTTACATAGAAAA	alt_5694_new	6	15	11	3	10	6	12	6	20	6
CCATCTAACCCTGATC	alt_5694_new	50	65	53	55	76	35	75	46	78	38
CTCTTTGGAGCGTGGT	alt_5694_new	2	4	0	6	2	3	4	3	2	1
GCGTTTTGTAAGCCGC	alt_5694_new	11	18	7	6	14	4	17	8	12	7
TCAAATCGGCCTTAAG	alt_5694_new	20	35	29	32	46	20	44	19	52	27
CACCCCCCTTGCAAAA	alt_5694_new	3	46	6	5	54	8	52	2	53	10
TTACTCGCAATTGCCG	alt_5694_new	17	27	21	24	26	12	29	18	33	11
CACCTCCTAGTCAGTT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TAGTTGGCGTTTTGCC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TCTGTGTCTCGGTGCT	alt_5694_new	10	18	17	21	21	13	17	9	26	19
CGGTCTCTCATTGCGC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GGGCTTTCCTCTATTT	alt_5694_new	39	50	36	38	53	48	65	44	59	36
GTTCATGGGCGAAAAC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
CCGATACGCCAGTCTC	alt_5694_new	6	24	1	8	18	3	28	4	19	7
CATCCTGGTGATACGG	alt_5694_new	3	11	14	8	15	5	24	4	26	5
CGATTCTAGTGGACAT	alt_5694_new	14	25	12	11	20	29	24	14	30	12
ATCCTTCCACCGCTAT	alt_5694_new	34	84	53	43	72	32	72	49	74	39
TGTCGGAAAAATCGAG	alt_5694_new	35	26	30	24	33	17	19	28	33	15
GTCAGACGGTTGGGAG	alt_5694_new	0	0	1	2	3	0	1	1	2	0
TTTCGATCAGTTATGC	alt_5694_new	6	12	6	7	12	6	5	1	20	4
AAGAGTGCCACTTGGT	alt_5694_new	1	4	1	0	2	1	4	3	2	1
AGGCTGTAGACTTTCC	alt_5694_new	23	48	26	28	30	28	32	27	47	19
GTTAAAGACGGCGACC	alt_5694_new	18	15	20	12	19	18	19	11	22	10
TACTGGTTCGCAGGTC	alt_5694_new	2	3	1	3	2	6	1	1	1	1
TATGCTGCTGATGGGA	alt_5694_new	60	82	72	69	57	55	76	49	77	54
GCGGTAATGCATGTCT	alt_5694_new	3	4	4	1	4	2	2	2	6	1
CACATGATCACCTCTA	alt_5694_new	16	25	35	39	41	21	31	19	31	10
TATAACCTTTCATTCG	alt_5694_new	0	0	0	0	0	0	0	0	0	0
CTAAGGTTTTTTTGTA	alt_5694_new	11	19	14	19	25	8	31	16	23	17
GTGTGTATCGGCGGTA	alt_5694_new	10	37	28	22	37	13	31	20	42	18
TGGGGTCTTGCACGTC	alt_5694_new	12	18	8	13	13	8	21	13	22	11
CTCCTGCCGATGGCCG	alt_5694_new	38	39	31	17	40	24	28	30	45	19
CTGATACCCATGCACG	alt_5694_new	14	25	17	9	26	8	19	8	21	13
CCCGTCTGTTTATCGA	alt_5694_new	2	22	8	2	11	3	10	2	15	0
ATAGTCCCCTTAAGTA	alt_5694_new	10	13	6	7	15	9	12	8	12	10
TTAAACCTTCGCGTAA	alt_5694_new	3	6	7	5	8	7	13	1	9	12
TGAGAGCAGGTGAAAA	alt_5694_new	42	73	59	64	82	48	67	50	107	45
TTCCAGCGCATCATTG	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TAGGTTGTAGCCCCCC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TGGTCCGTCACTACTA	alt_5694_new	5	9	20	3	7	5	11	9	14	4
ATGGCCGGGGCCTTTA	alt_5694_new	33	65	39	29	78	34	79	39	71	24
TATGAACGTTGCTCTG	alt_5694_new	0	0	0	0	0	0	0	0	0	0
CAGTTCTTTGGTCGCA	alt_5694_new	14	36	21	13	28	11	26	10	28	12
GTAGAACAGTTGACAC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTGTCACTCATT	alt_5694_new	10	15	14	5	27	9	19	4	15	6
AGGACAACGTTTAGCC	alt_5694_new	19	25	14	12	20	16	28	17	34	14
GTGGTACTCCGCAACT	alt_5694_new	45	99	72	46	88	54	87	48	123	54
ATAGCTGTATTGTCAG	alt_5694_new	6	3	4	3	10	2	11	2	7	4
CCCACGTCATGTCAGC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GAACTCTGCTCCTATC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GCGTTCCTGCCTATTA	alt_5694_new	35	37	31	29	66	18	59	27	37	22
TAGAGGCGATAGCCAT	alt_5694_new	56	108	56	60	83	63	93	47	137	44
TTTTGTTCATTCTGTT	alt_5694_new	13	12	7	8	6	5	12	7	14	7
GGAACCAGGCCTTCAT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GATCATTACCACGCAG	alt_5694_new	8	12	7	9	5	9	19	12	16	6
ACTTTCTTACGTATAC	alt_5694_new	14	33	30	17	34	14	41	20	29	16
TGAGGGCAGTCACACA	alt_5694_new	27	69	44	36	62	31	75	30	70	38
TAAGGGCCGATCCACC	alt_5694_new	63	77	80	57	88	63	110	58	104	68
GGGCTTGGCTTTGCAA	alt_5694_new	10	10	19	14	23	8	24	6	20	10
GCCTTGCCGGATTATA	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TTCACTTGGTCTCTCT	alt_5694_new	55	63	58	36	66	47	69	38	64	40
TCGAAAGGTTTGAACA	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TACTCCTCACTGCGTT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GTACGATGAGACGATT	alt_5694_new	23	16	11	8	13	6	14	6	14	7
TATGACATTTATGGCC	alt_5694_new	3	6	6	4	4	10	7	5	10	4
TAACTTGGTGCGCGTC	alt_5694_new	32	66	57	40	71	37	74	38	90	42
GTATGTTTATTACACT	alt_5694_new	0	6	2	1	5	5	5	2	3	0
TAGGCACAATCTATGA	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GATTCCAGAATTCTAC	alt_5694_new	40	64	56	47	63	48	67	29	56	40
CCGGCTACATTTCAAA	alt_5694_new	7	39	24	20	33	15	32	21	39	9
ACGAGGCCTTTCCGGT	alt_5694_new	21	29	36	33	30	18	32	19	22	18
GTGGATCTTTCTTTTT	alt_5694_new	20	29	19	17	29	7	21	7	30	12
ATACCACGGGCACGCG	alt_5694_new	16	39	18	14	20	15	21	17	29	23
ATGGTTGACAGGACAT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
ATGTCCAATTGGCCCG	alt_5694_new	44	59	44	38	40	42	56	30	49	25
CGGCTAGTAGCATCAG	alt_5694_new	18	28	47	19	27	17	38	36	32	27
AAGTCACGTTGCTCTC	alt_5694_new	13	13	7	12	11	8	12	8	14	10
GGTATCTTTAGTGCGA	alt_5694_new	11	21	17	11	22	11	20	10	26	16
GAGGACTCTGGTTCGC	alt_5694_new	10	10	9	10	14	10	7	14	10	8
TATTTAGAACGTATAT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
CTATTGTACATTTATG	alt_5694_new	21	46	24	23	47	26	39	17	47	20
TCGCGTTCTCCACGGA	alt_5694_new	9	22	14	11	21	7	25	14	19	10
TGCTGGTATTTGTAGG	alt_5694_new	29	43	35	27	32	24	48	26	37	27
GGGACATGCACCGACT	alt_5694_new	14	16	14	9	20	13	18	7	18	14
GAGATTCTTCTTGGCC	alt_5694_new	2	6	6	7	12	5	9	2	13	2
TCACTGTGCCCAGCTT	alt_5694_new	0	0	0	0	0	0	0	0	0	0
TTTTGGTCTTCTATGA	alt_5694_new	111	133	105	80	137	85	149	85	127	77
CCCGTACCTAAGCCTC	alt_5694_new	0	0	0	0	0	0	0	0	0	0
GATTTTTACGCCGTAA	alt_5694_new	7	7	6	6	13	10	16	5	16	11
GATACTCCCGGCAACT	alt_5694_new	15	29	14	23	36	17	37	17	26	13
TATCAGTATTCCTCCA	alt_5694_new	13	15	17	10	14	8	17	17	16	11
GGTGATGTGTAGCTAT	ref_2208_RC	15	12	19	7	10	10	17	17	32	15
TTCAGTTCTTTCCGCC	ref_2208_RC	13	18	24	10	14	15	20	18	13	13
CCTCGGTCCATAACGC	ref_2208_RC	34	58	37	35	56	17	61	29	82	26
TTTAACCGATACAGTA	ref_2208_RC	13	11	19	8	14	15	19	10	20	12
AAATTCTTGATTGACC	ref_2208_RC	71	84	72	66	82	59	100	47	66	51
TGCCGTGCAGTGTCTG	ref_2208_RC	7	6	6	8	15	5	12	8	9	4
TCTTGGAGTCGCGTCA	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GTATGCTTCGTTTAAG	ref_2208_RC	38	47	49	36	59	39	54	38	56	39
GAAGCGAACAGGGAGT	ref_2208_RC	64	53	47	46	41	43	48	47	47	41
CTCTCGTCGAAAATTT	ref_2208_RC	48	69	59	38	74	27	74	44	94	38
TTTGTGCCTTTTTGGT	ref_2208_RC	69	94	93	69	90	53	89	54	102	55
CACGTCACATTTTCAG	ref_2208_RC	65	82	70	63	76	52	80	52	84	65
TTTCAGATGTATCGCT	ref_2208_RC	28	32	40	37	43	41	28	23	34	30
CGAAAGGTAAGGGCCC	ref_2208_RC	45	74	71	50	63	52	66	52	57	48
TTTGACCCCTCGTGCA	ref_2208_RC	157	192	151	133	199	120	188	130	226	137
TTTTGTACTGTGACTT	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
ATCATGCGTTTTCTTA	ref_2208_RC	6	11	16	7	17	8	6	6	7	7
TCTCGGTGGCCGGGTC	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
TACTTTCAGCAAAATC	ref_2208_RC	16	17	9	15	23	10	18	13	20	9
TCGTCCTTTATTTGGT	ref_2208_RC	15	20	31	6	22	17	25	15	22	14
GAGAGGGTGAAACGTA	ref_2208_RC	5	15	7	10	4	7	13	3	2	10
GGCTTAGGCATATTCA	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GGTCTGTATTACTGCT	ref_2208_RC	19	26	14	14	32	17	32	17	24	24
GCTTCGGTAGGTCCCC	ref_2208_RC	24	58	36	45	49	38	38	25	48	40
ATGTTCGAGTGTGCGA	ref_2208_RC	33	55	38	28	53	30	47	41	66	37
CAGTTAAATCTAAAAC	ref_2208_RC	26	30	31	29	38	27	40	30	56	30
GTCTAGTCGCAGGACC	ref_2208_RC	155	235	179	153	201	145	214	130	244	137
TTTGCCCCCTCGTGCA	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GCCAAATCGTAGTGAC	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GTCCACTCCAAGGGTT	ref_2208_RC	21	25	22	16	39	22	37	13	33	11
CCTGTATTCTGTTGCG	ref_2208_RC	16	23	16	10	49	11	34	8	38	6
TCATTAGCGCCGCCCC	ref_2208_RC	12	21	18	23	21	16	30	13	27	19
CCCTAGCGTCTTCTAC	ref_2208_RC	21	36	27	18	36	26	32	17	41	18
CAGATCCGTTTGGTTT	ref_2208_RC	15	25	27	21	30	16	32	26	27	17
CCTTGCGAACATAGAT	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
CCCGTCTTTTCTCCTT	ref_2208_RC	2	4	0	1	3	1	4	0	5	0
GATTTTACGAGGCCGC	ref_2208_RC	51	81	67	71	73	59	68	49	84	48
ATTTATATCAGGAAGA	ref_2208_RC	17	18	22	13	18	25	21	21	13	17
ATGTGCGCTATATAAG	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GACTCCGGCCTGGATT	ref_2208_RC	6	16	7	8	10	10	11	5	11	7
ACTTGGACTTTAGTCC	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GATTACTAGATTTATT	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
TGTCTGATATTCAAAG	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
AGGCGCTGGTGTCACA	ref_2208_RC	20	29	24	13	33	19	28	20	34	23
CTTCTAGTCTGCCAAG	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GCAGCAATGTCCCGCG	ref_2208_RC	18	10	19	15	15	9	23	16	16	16
CTATTTAATGCACCAG	ref_2208_RC	49	89	62	57	79	47	91	46	88	50
AGGCTGGGCGTTCCCT	ref_2208_RC	81	141	130	100	162	91	144	76	164	84
CGGCGCAGTGCAAAGA	ref_2208_RC	17	10	13	24	19	10	31	9	25	15
TCTTACTTGATTCACT	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
CTCATCCCAATGCCAG	ref_2208_RC	9	13	8	22	14	14	33	16	21	11
CCGCGGCTACCCAAAG	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
CTGGTGGTTGGTTGTC	ref_2208_RC	12	10	16	12	24	11	19	15	19	16
CCTTCACTGTATTGAT	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
TAATCCCTCTATGAGA	ref_2208_RC	20	34	25	21	27	13	27	20	38	17
TTCTACCAGATTTTAT	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
TAAGACCCACGACTAC	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
GCCCTAGACTGTCTTA	ref_2208_RC	14	27	9	16	30	18	16	19	17	17
GCTGGCTTCATTCTTA	ref_2208_RC	18	24	15	13	19	13	17	12	27	13
GGTGTCAACCCACCAG	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
ATGTCGATGGTATGCC	ref_2208_RC	226	287	272	257	294	230	333	205	343	200
TGATGTAATTACTCGA	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
CCCGTCATACTGCATG	ref_2208_RC	6	0	1	3	7	2	4	2	7	1
ATCAGGAGCCAACAGG	ref_2208_RC	1	0	0	0	0	0	0	0	0	0
GGATAGCATTGGTCCG	ref_2208_RC	0	0	0	0	0	0	0	0	0	0
CGCACGTGGCACGAAA	ref_2208_RC	3	3	0	0	0	2	3	1	3	0
AATCGCGAGGTTGCAC	ref_2208_RC	13	26	15	29	23	14	20	10	31	14
TGAAGGAACGGATAAG	ref_919_reverse	21	17	21	13	21	8	16	9	13	18
GCACTATTTTGCTAGG	ref_919_reverse	36	54	40	44	47	37	54	36	41	38
GTGTCCACCTCGTCGT	ref_919_reverse	51	59	70	37	68	46	72	42	70	42
TAACAGTGAGATGTAT	ref_919_reverse	2	26	8	8	11	9	13	10	18	9
CCCGGACAGCCTGAGG	ref_919_reverse	34	37	31	19	43	20	50	16	48	23
CCGTGGTATGGTTGAG	ref_919_reverse	9	33	13	15	17	12	22	12	29	7
CACCGTATTTAAGACC	ref_919_reverse	3	5	3	5	3	1	6	6	3	3
TAGTTGACAAATCGAT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TAACAGTGATTATCCT	ref_919_reverse	13	22	21	19	25	17	21	21	16	18
GCAATATGGAGTATCG	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CAAATTCCGCCAGTCC	ref_919_reverse	15	9	7	9	9	10	18	6	7	4
GTGACAGATCTAGTTA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTCTCAGCCATA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTAAGTCACCGA	ref_919_reverse	14	13	11	23	21	17	22	17	9	13
GCCTGTTTAAGTGATT	ref_919_reverse	9	5	16	6	9	7	11	4	12	10
AGCTAATGTCATGTCA	ref_919_reverse	59	51	54	49	71	52	74	37	72	48
GACATGGGTGCAAATG	ref_919_reverse	28	41	36	26	59	40	56	43	54	41
TTTTGGCTAGATTACT	ref_919_reverse	34	44	48	23	59	20	48	34	34	38
AGCTTCGTTTTTACTT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
AAGATTGTGAGAGGGA	ref_919_reverse	8	14	13	9	11	11	13	17	13	14
AGCTAGCTTGTGTTTC	ref_919_reverse	20	39	25	17	37	16	35	21	52	19
CAATTCCCCCACAGCC	ref_919_reverse	14	18	11	11	18	9	26	9	23	13
ATCAAGGCATCGGATT	ref_919_reverse	60	63	80	49	62	59	92	31	72	49
AAGGGTTACGATAGGA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCTTGGATCTATT	ref_919_reverse	9	18	17	11	27	15	27	12	21	10
CCATTCAGTTGGTTCG	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CCAATAGAGGTTACTA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CAACTATTTGTGTTTA	ref_919_reverse	197	224	231	185	198	173	206	172	223	171
CTGTCTCCTAAGCGAT	ref_919_reverse	3	8	8	7	3	5	13	7	8	3
GGTGTCCGCTACGTTT	ref_919_reverse	44	58	52	58	62	31	59	36	58	34
TATCCTAGCCTGTCTC	ref_919_reverse	0	3	6	3	2	0	3	2	5	1
TGTCGCACGGTCTCGT	ref_919_reverse	12	5	14	8	14	8	12	7	8	5
AAGTATTTTTAATACA	ref_919_reverse	29	42	36	52	57	34	57	31	52	44
ACTATGGACTTACCTT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
GACGCACTCTCGACAC	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTATTTGGCTATG	ref_919_reverse	59	93	62	65	89	60	71	57	93	70
CCATGCGCTAGGGGCC	ref_919_reverse	45	69	58	56	74	61	56	53	72	50
CGGTCAGTATTTCCCC	ref_919_reverse	13	12	17	6	2	10	11	4	12	21
CGGTACGTCGTTAGCC	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCACATCCACGCC	ref_919_reverse	13	18	22	26	23	14	27	17	36	22
AGCATTTTTAAGCTTG	ref_919_reverse	17	44	26	24	32	11	32	15	41	14
TGCTTAACGCTCAGAA	ref_919_reverse	18	30	23	16	26	21	27	19	38	21
TTCCTACTGGGGTTCG	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGATCTAGTCCCT	ref_919_reverse	13	10	15	17	18	5	20	12	22	5
ACACCATTGGGCCGAC	ref_919_reverse	57	90	58	65	107	48	71	53	92	53
ACCGACATGTCCTGAT	ref_919_reverse	34	40	32	28	36	42	42	23	38	30
GTATTCACTCATGGGA	ref_919_reverse	27	14	31	27	29	22	19	20	21	14
CCCTGGAGCTAGTATT	ref_919_reverse	9	9	20	8	17	14	8	14	18	16
TGCGGCAGGCGGAAAT	ref_919_reverse	57	51	65	35	61	44	75	28	75	45
GGATGCGATGGTCTTG	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCCGCAGGCAAGA	ref_919_reverse	8	9	10	10	6	7	4	8	6	11
CCTCCACGGGTACTGC	ref_919_reverse	6	18	3	5	17	4	14	5	11	2
ACCTCTCACGGACAAA	ref_919_reverse	32	28	43	34	31	28	45	34	40	40
CTCACTTATACTGCCC	ref_919_reverse	2	38	4	5	38	3	28	1	24	3
ATGTTCTTGGGCGGTT	ref_919_reverse	44	69	45	41	65	36	50	41	67	36
ATATTCCTCATATTTC	ref_919_reverse	24	35	32	18	26	21	30	16	23	21
GTCCCCCGCCTGGACT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
GCACTGCGCCTAGTAT	ref_919_reverse	0	6	6	7	11	7	16	9	3	6
AATACCTGGTCGCCAG	ref_919_reverse	22	43	41	34	41	26	39	28	36	32
ACTCATTTTTTCATCG	ref_919_reverse	75	67	93	64	72	68	81	65	91	65
TTCGACGATTGGTCGT	ref_919_reverse	10	14	12	4	11	10	10	5	9	12
ATTTCTGCGGCCCCGT	ref_919_reverse	5	4	8	3	8	6	6	7	9	7
GATTCTAGCTGGTGTC	ref_919_reverse	0	0	0	0	0	0	0	2	0	0
TAGTAAGTCGGTAATT	ref_919_reverse	5	17	8	11	12	7	6	9	15	8
ACTTGCTAATACTACT	ref_919_reverse	41	43	38	39	60	47	60	41	49	41
AGCGCTCGCGCCGCCC	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGCTAGTCCCGGA	ref_919_reverse	41	28	39	32	23	38	26	28	25	31
GTCGTCTGACAGTCTC	ref_919_reverse	4	9	6	10	5	9	8	3	14	5
TTAGATAGGTGGCTTA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGCTCCGACTTAT	ref_919_reverse	17	46	26	18	36	25	44	19	43	20
AGTGTACTCTCGTCTC	ref_919_reverse	7	12	4	4	3	7	10	2	5	6
GGACTGCCTTATCCTA	ref_919_reverse	62	63	57	58	62	43	63	48	72	35
CTGGAATTTATCCTTC	ref_919_reverse	133	150	154	133	162	115	179	128	167	110
AATAGGGACGTTGTAT	ref_919_reverse	1	1	2	2	0	0	0	0	2	1
TTCTTCAAATGTCGAG	ref_919_reverse	29	40	50	32	32	31	34	28	46	36
TCACATGACTTGGTAG	ref_919_reverse	19	19	21	15	24	22	30	15	20	12
GACTAAGTTAAGAGCT	ref_919_reverse	27	51	47	49	59	54	59	49	63	27
TACACGAAACGGGACA	ref_919_reverse	50	65	51	56	59	51	59	41	69	38
AATATTTAATCTTCGT	ref_919_reverse	16	28	24	31	29	19	30	23	28	11
GTACAGAATCGGCAAT	ref_919_reverse	70	66	76	68	70	40	69	68	77	58
TTATACCTGCTCCCCT	ref_919_reverse	24	32	29	25	49	20	67	38	41	20
CTTTATGCGCCGCGTA	ref_919_reverse	1	4	3	2	1	2	4	5	6	5
TTCTTACGCAGGGTCA	ref_919_reverse	65	89	85	61	124	77	89	98	107	84
AAAGCTAGGTAAGCGA	ref_919_reverse	20	26	32	36	30	30	24	33	45	31
CATGGTCGTCCACATT	ref_919_reverse	8	4	7	1	5	7	11	1	5	6
TAATACAATTAATACT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCCAGCTCCGATC	ref_919_reverse	24	30	19	11	20	19	18	11	27	13
AGGCGGGCTTATGCCC	ref_919_reverse	20	31	27	22	29	19	38	22	34	25
TGTAGGGCGCCTTTAT	ref_919_reverse	35	73	47	29	56	55	54	32	46	33
CTTATTTTTTTCACAA	ref_919_reverse	26	42	36	30	38	26	28	20	42	35
TCGTGGGGATGCTTAT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGTGGGAGCACCA	ref_919_reverse	32	40	43	39	28	39	44	31	48	35
CGGAGCCCTTGCGAGA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTCGATAGAGGCA	ref_919_reverse	20	17	24	15	30	14	21	23	15	13
AATTAGGCACACGGCT	ref_919_reverse	87	108	92	90	105	89	119	79	116	80
GCCCCTTTCTTTGTGT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TGCACTCTTATTATCT	ref_919_reverse	14	22	29	24	27	25	21	24	20	20
CGCCTTGTACTAGACT	ref_919_reverse	32	79	48	29	57	33	53	30	66	28
GCCCGCAATACGCCCC	ref_919_reverse	2	2	2	1	3	3	7	3	5	3
CCGCTCTGTTCGGAGG	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTGACTGTCGGC	ref_919_reverse	9	17	8	10	15	11	25	12	22	8
ATGGGTCACAACGTTA	ref_919_reverse	38	88	53	52	61	54	85	45	71	57
TATCATCCCCAGCTAT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CGGATAATGCTATCTA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
GGGAAGTCGAAAGACT	ref_919_reverse	23	21	30	28	34	19	39	22	37	18
AGTATGATCTTTCCCG	ref_919_reverse	27	26	20	13	18	19	19	13	24	17
CCGGGCCTACGAAGGA	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCAGATATAACTC	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CAAGGAGCGACGGGGT	ref_919_reverse	54	73	65	57	79	51	71	55	67	51
AAGTAATTTGGCAGTT	ref_919_reverse	77	92	93	81	92	78	123	88	105	71
TCGCATTAGTAACGTG	ref_919_reverse	151	185	205	166	226	148	208	148	246	116
CGATTCACGCAATTAC	ref_919_reverse	109	99	153	109	118	100	120	98	120	83
GTTGCAAGCCATGCTT	ref_919_reverse	26	21	27	20	50	19	40	26	24	16
CTGTTCCCGCTTTGCG	ref_919_reverse	36	49	18	31	52	32	60	16	46	20
ATGATTTTGATGCGCT	ref_919_reverse	54	78	84	51	42	45	77	65	80	47
TTGAGTTCGTCAGAAT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCGTTTTACTCTC	ref_919_reverse	6	4	4	4	4	6	2	8	12	2
CATTAGCGTGACTTTG	ref_919_reverse	21	19	24	17	27	19	33	22	18	11
GGCACACAACAATTGG	ref_919_reverse	4	15	3	3	17	4	15	4	13	8
TCCTCTCGTGCACGAT	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCCTTAGGTAGAG	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCGTTACTGCAGC	ref_919_reverse	39	45	65	33	64	26	63	34	51	31
AAGCAAGACGGACCCC	ref_919_reverse	9	19	22	21	23	13	24	14	13	11
ACTTCCATCTGGCCTA	ref_919_reverse	30	24	37	36	44	30	53	32	49	35
ATACGCATAAAGGACC	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGGCCAATGTTGC	ref_919_reverse	122	198	196	163	210	155	197	139	216	136
CCATCACTGGTTTGTC	ref_919_reverse	12	7	13	10	15	4	10	10	12	11
GTGTAAAAGCATTCCC	ref_919_reverse	0	3	0	0	3	0	1	1	3	0
TTCATGGCGTCCTGCT	ref_919_reverse	137	110	162	122	124	170	135	136	123	112
CGTGTTTAAGAGTGAG	ref_919_reverse	51	49	44	46	52	34	77	48	74	44
AAGAGTTGTACGGTTG	ref_919_reverse	23	24	17	12	22	29	24	12	28	19
TTATCGTAATGGCCGG	ref_919_reverse	28	31	30	44	31	30	20	24	36	27
TTGAAGTCCAATCCTC	ref_919_reverse	0	0	0	0	0	0	0	0	0	0
CGGGGTTGAGTTGGTA	ref_919_reverse	48	69	58	58	71	52	59	49	67	56
CGATACATGACTGACC	ref_2374_RC	63	59	69	74	69	55	50	51	65	56
CGGGTCTGGGGTCATA	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
GTAATGAATAATGCTT	ref_2374_RC	49	50	81	73	71	64	64	57	63	70
TCAATGTAGGTACAGT	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
CCGAGGTTGTCTCTTA	ref_2374_RC	53	39	61	49	45	35	39	47	45	35
ACGTTGCTTTGTGGGC	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TGGACTGTTTCCCTGG	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
AGGCTCTTTGACGTCG	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
CTCGTTTCTGATATTA	ref_2374_RC	2	5	3	3	3	2	5	4	2	3
ATTGTCCGGCCCTAAT	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
AAGACTGCACCAAGTG	ref_2374_RC	13	14	19	12	17	15	12	13	14	13
GGCGGGATTCTGAACC	ref_2374_RC	92	80	105	57	71	79	106	76	73	69
GTTGATGATCCCAGTA	ref_2374_RC	15	12	35	28	35	25	38	26	29	30
AGTCTGGGGCATTAAG	ref_2374_RC	7	14	16	10	15	7	16	8	8	13
TTCGTATCCAAGGCTG	ref_2374_RC	74	106	86	92	105	77	109	82	110	81
ACCATGGCTAGGAACA	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
CTGTTAACCGGCGTGC	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTTGTTCGGGAA	ref_2374_RC	65	63	82	72	49	76	56	49	72	45
CATTCTGCCAGGTCAG	ref_2374_RC	5	18	9	8	22	6	16	7	15	12
GGCTCCGAACCGCATT	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
GCTCCCGTTTGTTGGC	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
AAATACGGTGAACGCC	ref_2374_RC	54	26	50	41	29	43	20	41	33	37
CGCGGCTTCTAAGAAC	ref_2374_RC	3	3	4	1	3	6	2	2	5	3
CTGCGTAGATCAAAGT	ref_2374_RC	17	16	25	13	10	9	18	17	16	8
TTGCCTATAGCTGGGA	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
GAATTTCACGCTGGAA	ref_2374_RC	46	51	54	48	49	51	48	40	48	39
GTTTCAACGTAGATCT	ref_2374_RC	13	14	8	10	12	10	3	4	5	5
GTCGTCCAAAAATCCC	ref_2374_RC	2	2	15	4	8	2	5	6	10	8
TTAAGTCCGCTAATGG	ref_2374_RC	95	71	93	92	72	64	87	66	99	65
TTGGGGGCAAAATGCT	ref_2374_RC	1	2	0	5	6	0	0	3	2	1
GCAAAGCGCCCGGGAA	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
CCTTTTTTCGTCAACT	ref_2374_RC	12	8	2	6	2	3	9	9	10	3
ATCCTAACTTGTTTCC	ref_2374_RC	55	49	53	47	53	55	64	54	37	44
GCATTTAATAGCAGAC	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
GGCGAAAGGCAGTCCG	ref_2374_RC	32	21	44	43	29	30	23	45	31	21
TTGGGGCACACCTCTC	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TGGAGTTTGGTTTTTT	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TCTAATTGGCCAGCGA	ref_2374_RC	29	39	43	34	38	32	37	42	36	25
ACTTCATGTACTGAAC	ref_2374_RC	6	14	11	11	12	13	13	13	10	12
CCTATATTCTTCGTCT	ref_2374_RC	93	81	109	96	81	68	72	64	92	68
CGGTGAATCGTGTTGT	ref_2374_RC	63	55	61	51	65	41	43	63	57	36
TAAGGCCTAAGCCTGT	ref_2374_RC	68	67	81	94	77	69	67	58	95	57
CGGTTAATACAGCATG	ref_2374_RC	48	55	66	41	48	39	42	45	54	44
GCGACTTGTCAGATTG	ref_2374_RC	45	54	59	50	46	46	42	56	70	38
CTAATCGTCTTCTACA	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTGACTCGCTCT	ref_2374_RC	16	13	11	8	18	8	16	11	8	9
GATTCTTTGTGCTATG	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
GTGGTATTTCTGCCTT	ref_2374_RC	5	3	6	7	1	2	3	2	2	2
GATGTGAATCGGTGCA	ref_2374_RC	20	35	38	23	45	19	39	28	27	21
TCGGAGTGTAACTGAT	ref_2374_RC	59	80	92	65	81	68	79	53	79	75
GGGTTGGAACTTATCG	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TCGAAAGTCCTGTATC	ref_2374_RC	81	95	89	73	101	64	78	95	86	75
AGCTTCGCTGCCTTCT	ref_2374_RC	2	0	8	0	1	1	2	1	3	2
GGAGCTTTTATGACAC	ref_2374_RC	8	11	7	11	19	6	7	7	9	7
CATTTTGCTCCTTAGT	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TCGCAGAACCGTAAAC	ref_2374_RC	44	32	39	42	35	32	35	37	54	46
TGGCGTGAGGCTCTGT	ref_2374_RC	44	22	37	49	23	45	29	29	31	37
CCCTATTCGTTCGATT	ref_2374_RC	2	6	0	6	3	3	4	1	4	1
CTTCAATTGTTAACAT	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
GTCCGAGACACACCGA	ref_2374_RC	153	106	160	138	131	117	113	117	108	99
GGAATATACTCTCTCC	ref_2374_RC	9	9	8	12	13	6	13	9	5	6
GCTTTGTCAAGCCAGA	ref_2374_RC	14	8	16	10	5	15	17	10	15	11
TCGCAGTCTCTGTACG	ref_2374_RC	25	24	34	29	21	19	23	19	35	21
AGCTTAGTGGCGGTTT	ref_2374_RC	4	7	4	6	9	3	9	2	4	7
CTTCAGCCGCACAGTT	ref_2374_RC	3	9	14	7	13	7	16	8	8	8
TACAAGCTAGTCACAA	ref_2374_RC	111	97	135	130	113	131	117	106	132	113
CAATGTCAAGGACATT	ref_2374_RC	131	154	169	157	154	146	193	156	189	123
TTCGCTCGCGTGCGAG	ref_2374_RC	6	10	13	6	3	15	5	6	5	6
GTCACCTTCGCGATAG	ref_2374_RC	0	0	0	0	0	0	1	1	1	0
TCTAGATCTCTATGAT	ref_2374_RC	19	48	29	20	45	24	38	31	53	22
GCATAACGGGTATGGT	ref_2374_RC	34	40	45	42	43	41	36	41	44	36
TTTGACTCTCTCGGCC	ref_2374_RC	13	11	21	13	20	8	10	11	13	14
ACACACATAATGCGCG	ref_2374_RC	35	32	47	43	27	39	35	31	56	36
TCATGGGAACGTGCTG	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
AACCCTGAACCGGCTT	ref_2374_RC	0	0	0	0	0	0	0	0	0	0
TACTTTAAGCGGGGGA	ref_5953_new	6	12	6	8	3	3	3	4	13	3
TTGGAGAAGTAACGGA	ref_5953_new	3	7	12	6	5	3	7	5	7	3
TTCCCCTAAACTGAGG	ref_5953_new	30	34	27	24	31	22	40	20	36	24
ATCGTCTTACGATTGA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GGGCCTGTTATTCGTG	ref_5953_new	12	14	15	14	15	11	14	18	14	10
CCTTGTGAGTTAATGT	ref_5953_new	53	89	80	79	113	50	86	59	95	57
AAGAGGTGCCAACGCA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
CTCGGGAAACTTCTGT	ref_5953_new	3	10	8	5	11	5	18	7	9	4
TCTGGTGATGAACAGG	ref_5953_new	10	15	20	14	8	12	20	4	23	9
TATCGTCTCTGAATGA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TCCTCTCTATAGTAGG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GATGGGTTGGATATTT	ref_5953_new	65	18	62	60	25	57	15	35	10	53
CTCGCCGATCGCACAG	ref_5953_new	12	54	32	26	49	25	52	19	54	18
GTGTCAGCGCACCCTA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GGATTGTTCACTTTGC	ref_5953_new	3	3	2	2	3	8	3	1	8	1
TAGGTTCTCTCGCTCC	ref_5953_new	45	49	45	37	44	34	37	34	41	28
CTACTTGTTGAAGTCA	ref_5953_new	17	9	15	2	19	8	8	10	8	3
GCCATAACGTCCTAGC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
CCAAGACAGTTACCGG	ref_5953_new	78	76	100	85	72	84	68	57	91	63
AGGTATGTTATTGACA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GCTGTATCATTACATT	ref_5953_new	7	3	2	1	5	7	3	4	5	5
GAGACTATTAGGTATG	ref_5953_new	5	11	7	10	12	10	7	13	10	7
TGTCACACGATCTAGA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
ATTTCCTTCGGCGTTG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TAGTCCGGTTTGGCTG	ref_5953_new	26	27	17	22	34	18	41	24	37	17
CTCTCTTGAGTTTCAG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TATTTCGAGTTAGGTT	ref_5953_new	22	21	24	22	23	23	28	20	25	19
ACTGCAACGAAGGGGC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TCCTCTTTCCATATTG	ref_5953_new	26	34	27	23	38	24	25	12	28	20
TCGGGACCTATATGTC	ref_5953_new	58	55	44	56	39	38	32	68	46	48
ATATATCCAAATACCA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TCCACTTCGTTTGGTA	ref_5953_new	15	27	13	21	25	26	31	15	38	14
AGAATTTGGTTTAGAG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GTTAGATGCTCCGTAT	ref_5953_new	8	7	15	9	11	7	8	7	9	14
GTCCAAGGGGGATCGC	ref_5953_new	15	13	13	15	13	9	15	14	12	11
CGTGTACACGTATATT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TAATCGGGTGTGTCGC	ref_5953_new	22	15	10	9	13	11	24	9	15	7
TCTACTCGTTTGTATT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GGACGACCGTATATCG	ref_5953_new	13	13	13	8	14	2	15	9	14	6
AGTTTGTTTCCTATAA	ref_5953_new	4	4	7	6	3	7	6	2	5	0
AATTTGTGCGAACTTG	ref_5953_new	2	15	9	4	13	11	9	6	7	10
TTTGGTCACTGTGCCA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TCAATGATCGCTGTTC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GTTTCTGTCTTAATCA	ref_5953_new	5	1	6	2	6	4	8	0	6	4
ATTCGCAACTGATTAA	ref_5953_new	47	57	60	55	51	47	48	48	59	55
CTGCGTTACCTCTTCG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TTGGATGTCTGCTTAG	ref_5953_new	45	39	61	25	61	29	52	28	50	28
GTATACCGCGTATATT	ref_5953_new	28	24	29	17	30	18	24	10	17	15
TTTCCTTACGTCTCGC	ref_5953_new	96	116	125	107	127	119	118	84	152	116
GAGTTTAAATGGTTTG	ref_5953_new	107	118	121	118	140	94	107	89	126	108
ACCTTGCGTAGTTCCA	ref_5953_new	43	49	43	46	42	44	45	29	51	34
ACGTTTCTACATCGAA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
CTCACGCCGTCTCGTG	ref_5953_new	53	59	38	46	65	38	57	47	62	46
ACTTTGTGCGTCCTTA	ref_5953_new	25	21	20	30	44	24	38	26	34	12
GCCGATGTCCGAGGGT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GTGGTTTGTTATTGAT	ref_5953_new	22	20	26	18	21	22	21	16	28	14
CGGCCGCTGAGCATGA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
CTGATCTAATGCGTCC	ref_5953_new	19	10	15	18	19	16	12	18	10	13
GAGGGAGTACGCTTTA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TAGACTAAGAGCGTCC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TTAGGGGCGCACTATC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GTTACGTCTTACTGAA	ref_5953_new	2	4	2	1	1	0	0	2	0	3
ATCATCCTTTACGTGC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TCGCATTGCCCTTCTT	ref_5953_new	48	71	60	57	68	65	61	56	94	55
GATTTTGGTTAAGCTT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
ATCCACCCTCCCTTGT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TTTTCGTTCACATAAC	ref_5953_new	50	50	52	31	44	46	59	40	51	56
TCGGTAGTACCGGTTC	ref_5953_new	9	13	5	13	13	12	12	9	14	12
GATGTTAATGTTCAGG	ref_5953_new	57	70	90	67	96	58	70	55	89	48
TGCTATTGTACGAAAG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TTGGACAAAGAATCCG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
AGTCGATAGTGTGTGC	ref_5953_new	8	10	7	4	4	5	3	3	8	2
GTTTCTGGTCCGCTGT	ref_5953_new	0	1	0	1	2	2	1	1	1	0
GTCAATATACTCGTCC	ref_5953_new	153	201	190	153	215	128	186	131	218	141
TGGCAAAGCAAGGCCG	ref_5953_new	41	51	54	47	38	51	38	45	41	41
GCTCGGGACACCGGTT	ref_5953_new	81	88	113	71	98	66	103	54	77	88
GCGCCATTTATTCCAC	ref_5953_new	50	63	62	63	61	58	70	41	75	67
GCAGGGCCGGATACAG	ref_5953_new	8	5	2	7	6	2	10	4	8	4
TTCCAAACGCACGGGA	ref_5953_new	1	4	5	10	4	3	3	2	5	5
ACATCGTAGCATCTTG	ref_5953_new	8	0	5	5	3	0	2	4	2	2
TTGGTTGGTGATCGGC	ref_5953_new	28	19	17	17	22	16	26	7	28	10
GCTCGGGACGCCGGTT	ref_5953_new	1	0	0	0	0	0	0	0	0	0
CCGCGCTTTGTGTGGA	ref_5953_new	7	4	9	8	9	9	8	8	8	2
AAAGCTTGAGTTTCAA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GTCGGGAACCTTGCCA	ref_5953_new	47	38	45	47	55	38	40	45	38	52
TGTTTCACCTTACCGA	ref_5953_new	65	103	62	46	119	58	108	44	95	66
TTCCAATTAACACACA	ref_5953_new	6	6	8	10	11	7	4	6	7	6
CAAAGAGACTGGGTTG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
ATTGATTACTTGCTTG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
ACCACTGACCTGGTCA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GTCCATGTTTGCCAGC	ref_5953_new	127	164	160	133	153	107	150	131	184	113
GTTAAGCGCGGTACTG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
ACGGACATACAGTTTC	ref_5953_new	10	9	6	6	7	3	2	8	7	6
ACTCCAGTATGCGCAA	ref_5953_new	40	57	47	61	55	31	34	28	52	44
AGCGTGGCCCCGACAG	ref_5953_new	27	22	18	15	30	34	19	21	22	24
CATAGTAACCGGAATT	ref_5953_new	28	25	34	33	26	26	27	32	37	31
CGACCTTTATGTTGAC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TTTCACTTGTTCACGG	ref_5953_new	18	16	29	23	16	23	30	12	19	16
TTTAGTTCTATTTCAT	ref_5953_new	8	9	23	10	11	7	10	14	13	4
TTTTGATTCATGGAGG	ref_5953_new	19	20	39	23	32	21	29	20	17	24
CTTGGGCGCTGCATAG	ref_5953_new	61	80	75	61	57	54	71	59	78	41
AACTTTTTTCAGATAT	ref_5953_new	3	8	2	9	3	6	7	4	6	3
GTAGTTTCCTGGGTTT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
CGTGACAGAGGTTAGT	ref_5953_new	31	49	48	39	59	28	48	40	56	42
ATTGGAAACATTTTTG	ref_5953_new	21	20	23	34	30	18	23	20	25	11
TTAGTACATGCAGTAG	ref_5953_new	82	113	92	88	124	92	126	65	119	83
TCGCCCTGTTTGCGCG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TGTTAGAACTGATCCC	ref_5953_new	6	10	2	9	2	9	8	4	14	4
TTTTGAGTGCGTCTAG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
GTTCTCCTGAAACAGT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TTGCCTGCGCAGCGAC	ref_5953_new	76	71	98	69	81	78	105	70	102	59
ATCGATGCCTGTGGTC	ref_5953_new	9	12	7	11	16	8	24	11	16	11
CACCGCGGTGAAACTG	ref_5953_new	37	37	38	29	46	37	45	26	41	36
CGCCACCTGTAAGCAA	ref_5953_new	8	28	10	17	33	9	30	10	28	12
AATCACCGTTGCCCGC	ref_5953_new	53	66	78	51	66	57	59	55	58	48
CTAGTTGCTTTTACTT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
AGCGGAATTACGACTC	ref_5953_new	14	14	8	7	9	5	6	9	16	7
ACCGCGGTGGATGCCG	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TGTTGGTCCCCATTTC	ref_5953_new	1	1	2	1	3	3	6	3	2	1
CGGTTTTTACTCATTG	ref_5953_new	40	44	42	45	33	44	49	25	68	25
TAATGGTGCTTGCGAT	ref_5953_new	0	0	0	0	0	0	0	0	0	0
CGGCCAAACTTCCATC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
ATCCTTCCCGCTTCTT	ref_5953_new	21	22	15	37	15	20	22	18	26	17
GATAGGTATCGTTACG	ref_5953_new	29	32	45	32	39	31	39	30	39	29
CACACTCCGGTTAGTA	ref_5953_new	19	94	21	21	84	17	109	15	99	7
CTAACTTCGCAACCGT	ref_5953_new	30	44	41	34	53	33	65	30	41	24
ACGGGGAGCTGATTGC	ref_5953_new	5	6	5	13	8	11	12	9	5	5
TGCGCGTTTCGCTAAC	ref_5953_new	0	0	0	0	0	0	0	0	0	0
ATATTGAGGTCGATTA	ref_5953_new	4	14	8	4	4	1	7	7	7	4
GCAGGAGCTACATGAA	ref_5953_new	0	0	0	0	0	0	0	0	0	0
TGTTAATTAGCGGAAA	alt_3161_fdr	7	8	5	5	9	3	6	8	6	5
CTTATTATTTTTTGCA	alt_3161_fdr	29	28	19	19	17	22	36	14	28	17
GAGGACATGTGACGCT	alt_3161_fdr	38	26	39	23	47	20	33	33	40	44
TATATCTTTTGAAGAG	alt_3161_fdr	26	29	39	33	27	34	30	39	37	31
TCATGGGTCGCGGTAG	alt_3161_fdr	5	5	2	2	10	8	9	10	4	4
TTCTTCACCTAGTACA	alt_3161_fdr	54	57	76	48	48	54	64	61	62	52
CCACCGTGTTGCAGTT	alt_3161_fdr	96	101	114	82	77	77	107	85	111	85
ATAATCAGGTGAGTGC	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAGCGGACTTGCT	alt_3161_fdr	20	10	22	18	16	15	26	12	23	24
TTAGTGTCTCTTGTCA	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
ACGACTCGGCCGAACT	alt_3161_fdr	50	53	49	46	30	38	45	40	35	58
TTATTCGGTCCAATTT	alt_3161_fdr	187	180	277	170	188	203	199	193	206	193
TACCGGCTTTTGGTCT	alt_3161_fdr	8	7	11	3	14	5	8	5	9	4
TTATTCGAAGTGAGAT	alt_3161_fdr	31	25	30	22	30	33	27	19	37	25
ATTCCTTACCGACGCG	alt_3161_fdr	10	5	8	12	8	11	14	12	8	8
GGCTAATACCTCTTTA	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGTTTAAATGGCA	alt_3161_fdr	31	27	45	42	37	35	35	49	34	26
CGTGCGTCGCCGAGCA	alt_3161_fdr	7	7	7	1	11	2	10	6	2	5
TGTAGACATTCCACCA	alt_3161_fdr	136	122	146	121	137	116	95	100	141	95
GAACAGCGGGTGCTTT	alt_3161_fdr	19	24	22	16	30	24	25	13	30	20
CGTCGGGGCGTGATCT	alt_3161_fdr	28	43	30	27	35	26	21	39	23	29
CTTAAACAGGTTACAG	alt_3161_fdr	12	10	16	11	17	16	12	16	9	10
CCCGGCAGAGCGACAC	alt_3161_fdr	81	54	95	54	64	77	57	68	59	59
GCGTCAGAGACACATT	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TGTACCCGAAATGTGC	alt_3161_fdr	141	117	168	101	130	153	139	112	150	132
TATTATTCCCAGTGAA	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
CAAGACCTTGCTCGCA	alt_3161_fdr	27	33	36	16	19	19	27	14	24	18
TGTTTCTGCCGTTAAA	alt_3161_fdr	33	35	36	30	40	40	36	25	35	24
TTACTGATCGTCTGTC	alt_3161_fdr	14	33	35	15	26	24	39	25	26	19
TGACTTCCCCCAGGAT	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGGTAATACATCT	alt_3161_fdr	54	45	63	36	48	54	53	50	35	52
TTACATTGGATCTTTC	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
CTACAACCTAATTCTG	alt_3161_fdr	12	7	6	6	5	11	12	8	6	8
TTTTGAAGTAAGGTCA	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TATGGGGAAATGCTCT	alt_3161_fdr	31	46	31	44	37	44	34	32	42	27
TTTTTTGGTTCATCAG	alt_3161_fdr	34	33	47	31	34	33	34	29	35	23
GCCATGCTATGAACCG	alt_3161_fdr	60	38	65	69	73	46	52	62	45	64
TACCTTTAGCTACAAT	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTTTTTTTAAGC	alt_3161_fdr	10	5	2	1	8	4	8	5	5	6
CTACGCGGATCGCCAA	alt_3161_fdr	39	38	66	45	55	45	53	40	63	37
GCACTTGCTGATAGGA	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
CAGGGCTAACATCTAC	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCTAGTACCGATT	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TGGTATGTTTTATCTC	alt_3161_fdr	16	9	22	13	10	18	18	18	15	24
CGTTTGAAGGGCTGCT	alt_4372_fdr	100	94	126	88	84	89	85	71	112	94
TTTAAGCCTATCTCTA	alt_3161_fdr	67	79	50	53	62	54	66	55	71	54
GATCCCTGAATATATC	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGGATTTGCTCGG	alt_3161_fdr	21	48	31	25	23	36	32	20	33	35
GTCCTAGCGTTTGGGG	alt_3161_fdr	3	1	4	0	2	0	2	1	3	2
CTCCATGCTTCAGCCT	alt_3161_fdr	20	36	38	28	42	19	15	28	35	30
TTACGGTCATTTATAT	alt_3161_fdr	46	27	42	28	38	21	35	46	29	41
AGGCCTAGTGTGAGGA	alt_3161_fdr	317	247	306	225	263	265	245	233	280	250
ATGTGCGAGTAGTATG	alt_3161_fdr	39	38	40	27	35	43	22	37	38	30
TGAGGATTAACGCTCC	alt_3161_fdr	72	95	85	70	80	78	79	59	97	57
CTGGCCCGCGGAAGTC	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
AGCGAATATCATTCGG	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTACGTGTCTAAT	alt_3161_fdr	16	4	25	17	8	17	9	9	17	18
GTCTGACATGCTGAGG	alt_3161_fdr	81	52	86	61	50	59	58	49	70	64
TTGATAGATATACGTT	alt_3161_fdr	19	15	20	8	19	11	8	14	14	13
TCTCGTATCATTCAGG	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTTCGGCGACGCC	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTTATGGCTATA	alt_3161_fdr	18	22	17	18	21	17	22	17	14	17
CGAGGACATCGCCTAC	alt_3161_fdr	54	42	81	46	36	57	53	55	53	58
TGTAACGGCGTGACCG	alt_3161_fdr	11	14	9	9	7	8	8	6	11	14
CGGACCCCTCGAGGTC	alt_3161_fdr	38	27	37	31	28	23	24	34	33	27
CAGTTCTACTTAGGGA	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATACGTTGTTAA	alt_3161_fdr	35	51	36	25	33	36	50	30	40	38
TATGCTACTTGGTTGC	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
CATCACCGAATTCTGG	alt_3161_fdr	34	32	34	45	30	37	41	36	58	22
GACAGGACTAACAATG	alt_3161_fdr	13	7	14	16	7	8	10	10	12	5
GGGATCTCATTGTTCT	alt_3161_fdr	18	7	7	11	10	13	11	3	8	8
AATATCTCAACTGGTC	alt_3161_fdr	19	44	29	13	32	24	40	16	41	15
CTCATGCGCGGTGAAC	alt_3161_fdr	11	18	33	19	23	8	20	6	11	16
ACCAGGTTACCAATAT	alt_3161_fdr	58	56	90	58	44	71	46	56	77	53
ATTTATTAAGCTTGTG	alt_3161_fdr	16	15	17	22	18	14	30	23	26	23
TCAGATATCTGCTTAC	alt_3161_fdr	15	14	10	18	18	12	9	15	15	12
ATGTGCGTTGGTATAT	alt_3161_fdr	19	12	16	13	12	15	14	17	20	17
AGTAAGCTATTTATCA	alt_3161_fdr	304	275	332	263	268	271	299	264	306	279
CGTGCCTTCTTTTTGG	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGGCGTCGTAGT	alt_3161_fdr	55	60	78	67	58	67	59	55	85	55
ATGAATAGCCCTGTTC	alt_3161_fdr	43	48	52	51	57	53	59	72	41	55
CGTGATCACGCTTTCT	alt_3161_fdr	16	16	31	21	26	23	27	21	21	28
TCGCTCTCTTTACCAC	alt_3161_fdr	17	13	18	11	23	15	18	11	16	10
GGGTTTAAGACTCGTA	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
GCATTCCTTGCAAATT	alt_3161_fdr	67	55	80	48	68	67	48	56	60	34
TCGGTATCACCAGTTT	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCCTGGGACGGAG	alt_3161_fdr	0	0	0	0	0	0	0	0	0	0
CTCATATCGACGATCT	alt_3161_fdr	134	117	168	135	128	152	124	144	168	133
TTTGTATTCGTTTTTC	ref_2040_reverse	226	72	275	229	75	218	57	229	76	210
AAATAAATTTCCACGC	ref_2040_reverse	66	31	80	84	24	69	24	81	46	62
TTGAACCTTACCCGCA	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATCAACGGGCCTCGTG	ref_2040_reverse	321	84	346	343	115	317	113	299	102	250
GTAAATGGTCCAGGGC	ref_2040_reverse	234	77	253	237	92	242	111	223	114	204
CACGTTCGAATCGCTT	ref_2040_reverse	48	23	45	35	22	32	25	32	26	33
TGGTTGGATCTCTCAA	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCATGCGCGATCA	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTGTTTGGTAGG	ref_2040_reverse	65	25	81	88	25	54	17	62	21	69
CTCGTGTCGGGGTTAC	ref_2040_reverse	211	70	270	210	81	196	63	205	71	186
TCCTGCCTGTTGTCCG	ref_2040_reverse	42	12	41	50	22	41	15	41	17	29
TTGGGGGTTCATGCAG	ref_2040_reverse	31	6	28	31	10	19	6	27	7	22
CGGCTAGGACATCTTT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
GAAAGCCTCCGTCAAA	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
GCACCTATAGGGCATT	ref_2040_reverse	70	22	94	80	27	64	33	60	28	56
GTATTTAGTTTGTTAT	ref_2040_reverse	20	1	24	20	6	13	4	11	3	21
ATATTAGCTTAAAATA	ref_2040_reverse	21	1	27	20	7	20	6	14	5	17
GCTTGCTATTGTATAA	ref_2040_reverse	61	24	70	69	16	55	22	44	20	59
CGTTTTGTCTGTAAGT	ref_2040_reverse	22	3	12	4	3	13	4	1	2	13
AGGACTGCATATGGTC	ref_2040_reverse	64	18	84	71	19	60	20	63	17	68
AGTGGGCCGCGTTTTT	ref_2040_reverse	31	8	45	33	14	38	10	35	13	27
AAACCGTGCAAGTTCG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTAAAATCGCATT	ref_2040_reverse	6	6	12	6	8	11	1	3	3	9
CCTATTGAATGCGTCG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TTCAACGGCTAGGGGT	ref_2040_reverse	0	0	0	1	0	0	0	0	0	0
ATCATACCTTTTAGTG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCTTTCTGAACG	ref_2040_reverse	382	126	456	380	139	382	123	368	130	316
ACCTGCCAACATTTAG	ref_2040_reverse	108	37	141	101	50	99	50	123	42	99
TCTTTGCGGGCTCGAC	ref_2040_reverse	313	131	341	359	137	315	113	329	117	280
TGTGCCGGTGAGTGCC	ref_2040_reverse	30	26	36	30	23	25	27	14	24	18
TCATTCCCCTCAAACA	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCCTCCGCGATT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
CACCTGGAGATTTTAA	ref_2040_reverse	115	25	133	121	24	74	44	94	42	88
ACTCCCTGTATTCCTA	ref_2040_reverse	31	38	28	47	31	23	26	29	33	38
TTAGTCCTCCGTAATG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGTACTAATCTCC	ref_2040_reverse	245	77	213	193	112	211	95	160	79	160
TAAGTATGGCGTCCTT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TAAATCTTGTCCACGT	ref_2040_reverse	123	48	134	124	43	118	39	103	36	108
ATGCTGCTGCACAGAA	ref_2040_reverse	184	54	253	217	42	176	55	183	73	173
GGTGCAGGCAGTGTTT	ref_2040_reverse	63	25	94	95	25	58	22	73	28	71
TTATTTAGTTATTCGC	ref_2040_reverse	44	11	51	47	12	37	18	32	17	37
AGTCCTCCCGGCCTGT	ref_2040_reverse	21	8	25	28	16	30	12	28	17	26
GCCCTCCGCTTATCCC	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTTGTTCTAGAAC	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTCAGTTGTATAG	ref_2040_reverse	234	107	280	248	84	252	107	231	97	205
TGAGTCTCCCGTTCCC	ref_2040_reverse	98	43	107	96	33	89	38	81	39	86
GCAACCAAGTCCGTTT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGTCGACACGTTG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TAGACACGGGTCATAC	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTGCTAGAGCACT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCCGGCGAGTTGG	ref_2040_reverse	309	132	306	264	154	265	146	230	152	279
TCCGCCCGGATTGGCT	ref_2040_reverse	202	82	282	277	80	245	99	217	76	215
TAGTAAGGTCCTTTAC	ref_2040_reverse	181	73	191	203	56	190	48	184	58	160
CTTGTTCGTATCGAGT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATCACTTCGCATCTGG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TTGGATAAAGCATTAC	ref_2040_reverse	115	32	147	111	23	107	38	110	36	99
CACTTGTGCAACCCTA	ref_2040_reverse	99	63	111	100	48	88	41	100	53	81
GCTGTGCGCTTTAAGG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
CTATCAGCGCTAATGG	ref_2040_reverse	133	47	145	156	64	129	52	122	64	140
CGTACCCGGCTAGTAT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TAGGGCTTACTTTTAT	ref_2040_reverse	0	0	0	0	1	0	0	0	0	0
TGTCGCTGTTTGTCCC	ref_2040_reverse	78	31	105	100	33	73	36	80	34	64
GACAATTCAAGTCGGT	ref_2040_reverse	82	34	127	84	35	106	42	103	36	90
TATCACCTTGCTCGCT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATTACTCTTAATTTTA	ref_2040_reverse	9	7	21	19	5	11	6	10	4	14
GGGGTGTATCAATTCT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGTTATCGCTCGC	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTTGATGTCGATA	ref_2040_reverse	98	44	102	83	41	88	34	93	37	84
ACGCCATAACAGCCGG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGGTGGGTCTTGC	ref_2040_reverse	159	69	208	153	62	136	88	153	69	129
GGTCTAGTGGTTCTGC	ref_2040_reverse	39	15	47	29	12	39	11	39	14	25
GCAATGCGTCTAGGTC	ref_2040_reverse	41	14	44	44	16	39	16	32	12	50
CGTAGATATCACGGGG	ref_2040_reverse	144	40	131	153	44	108	29	126	52	127
TATTACGATCTTTTAA	ref_2040_reverse	93	37	123	117	26	92	27	88	35	99
CCCATTCTCCGAGGTT	ref_2040_reverse	87	31	103	101	25	75	19	88	19	65
TTGTCCTAGAGATTTC	ref_2040_reverse	160	50	213	157	50	147	45	159	52	125
CCTTGATAACGTAAAC	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
GTATCGGCGTGGACGT	ref_2040_reverse	59	27	112	70	21	55	15	53	19	57
AGGGGGGTCCTTGGTC	ref_2040_reverse	419	139	532	448	147	416	147	388	158	349
TAGGGACTGCCAGCAT	ref_2040_reverse	14	9	31	26	10	26	9	18	4	29
CTAGCTGTCCTATGAA	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TCAATTTTATTCCGGG	ref_2040_reverse	157	60	246	182	60	179	52	156	73	125
GTTTCCGGTTGAAGTC	ref_2040_reverse	28	8	17	16	7	23	16	26	8	15
TAGAGGTATGTGACAG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TCGATGGCGTAGTGGC	ref_2040_reverse	156	48	204	156	48	160	51	140	49	146
GAAGATTAGGTCTTGA	ref_2040_reverse	561	160	710	567	185	504	209	548	178	467
GCCTGCGCGTTCACAT	ref_2040_reverse	61	15	73	69	18	72	22	48	15	32
TGAGCCATTTATCCAG	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGTCTACAAAGG	ref_2040_reverse	202	48	269	205	48	157	74	170	60	147
TACCTTTTCAATCTCT	ref_2040_reverse	233	69	263	250	51	201	77	219	66	211
ACCTTCTCATTTGGCC	ref_2040_reverse	125	57	148	127	67	113	71	121	74	105
TTGGTCATCGCTAAAT	ref_2040_reverse	24	8	38	21	3	26	14	16	6	36
CGATCGTATCGGTAAT	ref_2040_reverse	154	36	150	163	36	121	30	145	57	123
CGAGTTCGTTCTTAAT	ref_2040_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGGGCTGCTTAAG	ref_2040_reverse	35	12	54	23	6	39	11	43	12	39
ACTGGTTCAAGGTTAT	alt_2950_reverse	25	27	39	25	19	22	16	33	24	30
CGCAACGAAGGTGCAT	alt_2950_reverse	73	46	84	74	44	58	45	101	41	68
TAGTATAGTTCGGATG	alt_2950_reverse	28	16	40	38	10	28	27	23	14	29
ATGCCTTGCGGTGCTT	alt_2950_reverse	30	18	34	36	25	28	32	26	39	24
TAATTTCCTCCTTCTT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGTTAGCACTAAC	alt_2950_reverse	0	0	0	1	1	2	0	1	1	1
AGTAATGTTTACTAAA	alt_2950_reverse	57	49	110	105	52	82	45	75	52	79
AATCGGTCTGTTCTAC	alt_2950_reverse	107	56	116	123	63	67	63	82	60	91
CTGTACCATTAGGAAT	alt_2950_reverse	16	14	25	17	5	25	16	25	18	23
TCCGTTTAGGTGGCTC	alt_2950_reverse	19	8	15	14	11	13	10	16	11	19
GTACGTATGTTATCCC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GCACTGTTCCCTAAAA	alt_2950_reverse	14	15	23	17	5	12	8	4	9	10
TTAAATAGCAAAAACC	alt_2950_reverse	34	21	59	34	28	41	18	29	34	30
TAGCGGTACTCCACCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TGAACCAATATTACGG	alt_2950_reverse	22	29	32	22	28	41	16	25	19	24
CTCTCCTGCACTATCC	alt_2950_reverse	2	4	2	1	3	2	6	2	7	3
ATGACGCTTCCGAATT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGTTATTTGGGAA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
AACGCTGCCCGATATC	alt_2950_reverse	22	14	33	15	15	26	14	25	16	25
CATCGGGATGTTACCA	alt_2950_reverse	33	18	66	36	18	41	33	46	16	31
TCCCAGATCTTCGTTG	alt_2950_reverse	7	4	8	2	1	3	3	3	2	0
TCTACCGTGCAGGGCA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTCTGTTAGAGGG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCGATTGAGCTTT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGGGGCCGCACTT	alt_2950_reverse	23	11	29	32	15	23	10	32	14	17
GTTAAGGGCTTGGTCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTGAAAGGGTGAGTAT	alt_2950_reverse	99	41	103	94	42	87	66	58	41	64
CACATGTTTAGTTCGT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCGCTCTGAAGCC	alt_2950_reverse	2	0	2	3	1	1	0	2	1	3
ATATGGATGGAGAAAG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
AATGCCACCTAGCCCG	alt_2950_reverse	47	40	63	45	38	54	41	50	33	42
GGCTGATAGGCTTGGT	alt_2950_reverse	126	82	131	126	94	124	83	113	72	123
ACGCATTCCGGGTCTC	alt_2950_reverse	97	67	164	118	71	117	65	102	83	88
TAGAATTGCGGTAAGT	alt_2950_reverse	26	11	32	17	14	23	18	20	12	21
CTTTGCGCAATAACTA	alt_2950_reverse	70	66	86	72	40	64	46	58	59	44
CGGGTGACTCGTTTCG	alt_2950_reverse	14	6	8	8	8	4	6	2	10	8
CTGTACTGAACTCTAT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GAAAACTGGAGCACCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCGTGTTCAAATT	alt_2950_reverse	23	22	31	25	17	35	14	18	15	33
CCACAATAGTTCCGTA	alt_2950_reverse	7	4	15	14	10	17	12	7	9	7
TTTTTATCGTTCCATT	alt_2950_reverse	332	229	424	324	223	314	223	298	233	336
GGATTCGGGCAGTTCT	alt_2950_reverse	85	45	111	108	60	97	53	83	55	82
GGGGAGGTTGAGTCCT	alt_2950_reverse	4	5	9	6	4	5	6	3	8	10
TTTTGATAAGTTCGCT	alt_2950_reverse	42	21	72	47	26	65	22	41	33	47
ACATAATCTTCGGGTC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCTGCCTAGGGAC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTGTACCCCAGTCACG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCAGTCCTCGGTA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGTCACTTATTAT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTTAAGGTTGCGTGTT	alt_2950_reverse	94	72	130	100	76	97	64	86	69	96
GGTTAAATCACTGCCT	alt_2950_reverse	23	25	32	36	15	30	22	19	21	18
CAGCTGATTCACTCTC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCCCGACTTACGT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
AAGTATATCACGCTCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TGTATATGTACGGCCC	alt_2950_reverse	100	58	123	110	79	94	70	114	75	88
GATTGTAATAATCATT	alt_2950_reverse	132	87	183	111	100	123	88	105	117	123
CCCCGAGCCACGTTTT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCATTCATTACTT	alt_2950_reverse	11	8	22	23	12	14	12	11	12	12
ATGATTCTTGGTGGCC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
ACTCAGTCGTTACCTA	alt_2950_reverse	3	2	4	5	2	3	3	2	4	5
AAGGCACAGTTAGAAC	alt_2950_reverse	19	19	16	10	4	17	7	10	8	7
ACGTTAGTAGATTCAC	alt_2950_reverse	9	3	11	10	7	8	3	6	2	7
TAGTACACGCGTTGTC	alt_2950_reverse	15	30	14	6	29	8	37	9	33	9
CTCGGTTCTGATCAGT	alt_2950_reverse	27	7	23	25	12	17	16	19	14	14
CGTTATTCCGATTTTC	alt_2950_reverse	114	58	128	97	46	52	48	79	53	94
GCCAACTCCCGTCCCT	alt_2950_reverse	23	29	30	32	32	38	18	29	41	11
ATTCAATTTTGTACGA	alt_2950_reverse	27	10	27	21	14	22	23	23	11	20
CGCGCCCGTTCGGTCC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GGATATACCCAGGGGA	alt_2950_reverse	296	131	330	276	123	285	112	277	144	247
TCGGTCTCCAAGGATT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGTCCTCATCGCG	alt_2950_reverse	16	9	9	10	2	29	10	12	7	15
GTGGGATACCGGGCTT	alt_2950_reverse	10	8	27	16	10	11	9	11	7	18
CGAGCTAAAGTAGGGG	alt_2950_reverse	84	41	119	84	59	88	55	93	65	88
CTGCGTCAACATTTAC	alt_2950_reverse	45	30	67	43	35	54	36	42	51	59
TGTATTGCGTGCTTCA	alt_2950_reverse	10	8	23	14	13	11	15	8	3	9
TGCCTGCAGCTCAAGC	alt_2950_reverse	56	34	63	40	24	39	26	43	28	64
CTCGGTTTGGGTTGGC	alt_2950_reverse	67	42	93	79	32	57	37	50	52	64
GATTAAGCTGATTGAA	alt_2950_reverse	190	86	260	200	121	179	120	164	108	187
TTTATAGACTTGTGTA	alt_2950_reverse	10	9	18	8	9	16	10	14	9	9
GGCCTCTATTATGGCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTCCTGTTGGGAT	alt_2950_reverse	30	23	30	29	34	26	28	27	22	24
TTCTAGGAGTGCGAGC	alt_2950_reverse	37	21	44	39	49	44	46	42	32	35
ATATCTCTGGTTATAT	alt_2950_reverse	22	5	16	20	9	18	14	15	13	6
CGACTCCAGTGATAAC	alt_2950_reverse	25	37	56	18	27	29	27	26	37	19
GGGCCAAAGTCCAGAG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TGATGACCCACATGTC	alt_2950_reverse	86	32	99	61	40	61	45	68	59	41
CAACTCTCAGATGATG	alt_2950_reverse	43	27	32	36	30	39	38	42	43	39
TACTGGATTTTCTCGC	alt_2950_reverse	4	4	17	7	6	8	5	6	6	12
CGTCTTTCTTAGGCCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTCTAGTCTCCGA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTATTAGGTTATA	alt_2950_reverse	94	62	138	112	67	122	70	107	82	101
TTTGAGAATATTCTCA	alt_2950_reverse	33	32	43	34	28	24	23	38	43	33
TCAGGTTAGTTCGGTC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAGGATCTAGGCC	alt_2950_reverse	87	51	115	71	53	66	58	68	62	73
TGTGACTCCTAGAATG	alt_2950_reverse	45	30	57	65	33	53	48	30	50	48
GTATGGTTTGTGGCAG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CACTTCTCAGGCAGAC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
ATCATTCAGACACTTA	alt_2950_reverse	59	23	58	47	36	49	31	41	35	51
GGTGCAATGATATTTA	alt_2950_reverse	45	50	75	58	34	51	33	51	38	43
TAGGCGCTAGCACTTT	alt_2950_reverse	36	29	46	31	32	27	33	34	31	36
TATGCCCCTGTTCATT	alt_2950_reverse	143	59	129	117	85	95	105	109	68	125
TTGGGATCATCGCTGT	alt_2950_reverse	12	7	14	15	7	8	7	13	9	11
ATTTCTTCGCGCTATG	alt_2950_reverse	4	2	4	3	0	8	2	3	3	3
GGTGTACATGGAAAGA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
ACTATTACTTACATCC	alt_2950_reverse	73	67	121	88	58	75	59	72	60	61
CTCGTAGCGGCTGTGT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
ATAATATATGCTACGA	alt_2950_reverse	30	14	45	26	27	39	35	25	24	30
GCTCTTGGTTCCATTT	alt_2950_reverse	104	60	125	119	80	79	67	99	58	76
CTCTTCCCCTTTGTTC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TAATACTGTATATTGA	alt_2950_reverse	157	80	190	147	106	142	84	156	100	131
TATTTTACTCCTATTT	alt_2950_reverse	48	11	27	22	13	15	15	20	22	24
TAAGCACCAGACTTAC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CATGAGTGTACGTCGG	alt_2950_reverse	29	12	25	24	32	29	22	23	15	19
TGTTGTGTTCATTAGG	alt_2950_reverse	155	116	158	130	83	120	125	138	121	113
GCATAATCTCGGTAGT	alt_2950_reverse	27	9	24	18	15	16	14	23	12	11
TCCGGTGCATTGGGGC	alt_2950_reverse	2	1	3	3	2	2	3	2	3	2
AATAGTAATTCTGCTT	alt_2950_reverse	58	34	72	51	36	45	30	48	40	53
TGTCGGGTTCATGGAC	alt_2950_reverse	14	10	26	16	8	25	7	24	22	18
TAAAAGGTATTTGTCA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CCTACAGAATTCGAAT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GTACCCCACTGTCTCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TAGCAAGGAATAAATC	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAAAAGATACTCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGTCAATGAACCG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CCGATATCTAGGTATC	alt_2950_reverse	111	91	121	94	86	103	62	76	73	111
TGTATCAAGTCGCATG	alt_2950_reverse	74	52	101	83	67	77	49	83	65	84
GGCGCTTAAAATACTT	alt_2950_reverse	16	14	26	43	12	29	16	27	10	22
TACCCTCGGGCTCTTA	alt_2950_reverse	26	19	40	39	30	18	31	40	27	34
TGTTTTCTTCGCTGTG	alt_2950_reverse	94	54	112	114	77	81	74	111	52	72
TAAATAGCTTTGAGTT	alt_2950_reverse	177	124	197	164	115	164	109	157	130	149
GCAGGGCCGATGCGAG	alt_2950_reverse	20	18	23	35	23	20	21	30	16	24
CTGTTGGGCGGTCCAT	alt_2950_reverse	39	35	57	43	25	60	29	53	41	51
TAGTTCTACGTTTTCT	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
TTAATTTACGTGTTCC	alt_2950_reverse	55	25	62	32	31	40	34	42	33	39
TAAATACCGCATTAAA	alt_2950_reverse	64	32	83	62	30	67	28	58	22	54
TAAGTCCATTGTTTTG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGGTTTTCTACAG	alt_2950_reverse	10	3	20	18	7	13	9	23	6	15
GTGTAAGGCTTAAGGC	alt_2950_reverse	36	22	51	37	24	33	36	39	31	52
TGTTTGAAGGATGAAA	alt_2950_reverse	1	0	2	0	0	1	0	2	0	0
GAATCAGGGCGCTTCA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CACCCGCAGCCGCGTA	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
CAGACACGGTAGCTCC	alt_2950_reverse	2	6	6	12	0	4	4	7	4	8
TTCCTTACCGAGGAAC	alt_2950_reverse	31	18	26	28	22	37	22	36	34	25
TTTTGCTTTGTCTTGT	alt_2950_reverse	60	25	65	47	43	56	38	52	17	49
ATTCAATTCGGTTTTG	alt_2950_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTGCAAACAGTTA	alt_2950_reverse	86	70	115	84	77	84	67	68	71	83
CTTCGTCTGTAGTCGA	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TTGACACTTAGCTACA	ref_3331_RC	40	42	62	45	49	40	57	31	39	29
CGGTGCTCAGCTTGAT	ref_3331_RC	23	29	49	31	32	20	41	30	39	30
AGTAGCCGCGTGTGTC	ref_3331_RC	3	7	8	6	6	6	3	3	4	4
TTGGTTCTTGGTTCTA	ref_3331_RC	38	33	40	47	32	31	36	36	32	27
TCTAGGAACTCGCATC	ref_3331_RC	7	7	13	7	8	6	5	6	9	12
TCTTGCTGCTCTACAG	ref_3331_RC	37	47	56	38	47	30	45	34	52	31
TGCCACCACTCCATTC	ref_3331_RC	6	8	7	10	19	8	19	13	18	3
AGAAGGTGTAAAATTC	ref_3331_RC	19	21	16	24	13	17	6	11	20	10
TTATCACAGTCAAGTA	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
GACCTAAGCACCGGTC	ref_3331_RC	2	0	1	1	0	0	0	0	1	0
CATCATCTACTGATGA	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TCAAGCGTCTGATCTA	ref_3331_RC	25	23	29	27	30	22	24	24	29	33
AACCACGATTCTAGAT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TGGTCCTTCGTCATCT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
AGATTCGGTGCTTAGC	ref_3331_RC	16	14	19	13	16	14	17	14	14	21
TGTCTCTTGGTATCTG	ref_3331_RC	103	128	109	107	96	84	97	89	121	82
CTTAAGCGGCATCGCA	ref_3331_RC	100	85	117	123	90	80	74	87	116	97
CAGTGGTGGACAAGTA	ref_3331_RC	13	7	8	11	9	11	5	14	15	10
ACCTGAACGTATAGTT	ref_3331_RC	30	52	46	35	41	39	55	27	57	33
CTGGCCAAGCTTCGGA	ref_3331_RC	81	77	95	65	82	74	82	62	81	67
ATGTTACGTCTTAACA	ref_3331_RC	23	22	16	14	24	10	19	19	10	14
TCTGCGTCTTCGTTGC	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TATCTTGATGTACTGC	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TTGAGCCTACCGTGCC	ref_3331_RC	17	23	26	33	29	17	28	20	24	21
TTTCGCGGCAGTTCCC	ref_3331_RC	15	15	12	16	10	9	15	17	16	6
AGCACTGACACCGAGT	ref_3331_RC	16	19	15	9	19	11	25	17	16	13
AAGTTTCTTTAGGGAT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
ACTTTGCCGTCCAATA	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
GTTACCAAAATTCCAA	ref_3331_RC	8	8	8	10	10	13	15	6	7	8
GTAAAGTTCCACACAA	ref_3331_RC	12	15	13	10	11	13	11	15	24	7
TCCTATTTCCTTGATC	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
CATCTGCCCGATGTAA	ref_3331_RC	36	50	58	47	53	43	41	48	50	59
GTCTTGGCAAAATTCT	ref_3331_RC	14	15	25	20	29	16	14	24	29	12
CGCTTGCCATTAGTAG	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
GCGCGGGAACGTTATT	ref_3331_RC	13	23	28	22	27	18	24	23	23	17
GAATTGCCAAGGGTCT	ref_3331_RC	14	14	7	11	14	12	19	12	15	10
GTGTACTTGGTGCTAA	ref_3331_RC	116	139	137	117	130	101	127	105	118	72
CTACTGGCATGGGATA	ref_3331_RC	14	8	21	12	11	21	11	15	16	22
ATGAGACTTACGCTTG	ref_3331_RC	11	17	10	12	14	11	19	11	14	9
TCCTTTAGTGCCTATG	ref_3331_RC	11	20	19	18	19	19	21	20	16	15
AGTTCTTGATTTCAGG	ref_3331_RC	10	12	4	8	15	7	13	11	15	14
TCCCTCTTGCTAATTG	ref_3331_RC	34	25	44	38	38	28	42	26	24	25
ACACTTTTGGCTTAGA	ref_3331_RC	15	18	29	16	22	15	15	25	19	33
TTCTGTTTGATTTGCA	ref_3331_RC	8	13	10	10	8	12	13	6	14	19
AGGCTTCGTACGACTG	ref_3331_RC	65	43	83	52	53	68	49	49	59	48
CTCATACCGTCGTATC	ref_3331_RC	6	13	4	1	12	3	8	4	5	5
GCTATTCTTTCTGCAT	ref_3331_RC	1	3	1	3	3	5	4	2	5	7
GCTCAAACCTATTAAT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TTCCAAAAAATTGCTG	ref_3331_RC	129	106	98	114	102	110	109	106	116	113
ATTACGCCCTCACTTC	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TTCGGACTAACATAAG	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
CTGTGATATCCCTGGA	ref_3331_RC	458	421	520	449	429	399	463	427	448	430
TATTGTTGAACGTTAT	ref_3331_RC	30	23	32	33	18	34	32	9	24	20
TCTCTTTACAGGCGGC	ref_3331_RC	139	106	198	151	135	152	99	154	119	143
CGAGCATCTACGGCAG	ref_3331_RC	103	98	141	99	106	80	122	80	110	92
TGCTACTGAGAATTGA	ref_3331_RC	19	18	19	26	23	9	17	20	21	8
AACTGGGGGATCAGCT	ref_3331_RC	30	30	41	35	19	35	29	30	35	22
TACGGTTATAGCGTCG	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TATCCGCAGCTTCCTA	ref_3331_RC	20	20	16	21	10	14	17	15	15	14
CTCTGTTTAATCGATT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TCTTTACATCCTGGGT	ref_3331_RC	105	115	107	81	130	91	119	88	116	101
TATAGACTCCCGTGGC	ref_3331_RC	7	5	12	12	3	4	10	2	13	14
AAATCGCAATCCCTAG	ref_3331_RC	63	64	122	81	74	75	65	80	62	60
TCTATTAGGCCCAAAC	ref_3331_RC	16	19	20	14	22	19	18	17	24	20
GGGCGTTTAACCGCTT	ref_3331_RC	5	14	11	15	15	15	9	12	9	9
TCTTATCTTGGCTAAA	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
GTTTCCCCCGTACTGA	ref_3331_RC	14	16	27	18	17	12	20	10	19	18
AAGTATAGAACATACG	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TTACGTTCGCTCGTTC	ref_3331_RC	27	24	43	35	39	24	37	37	32	17
CCTCCGCTTAATTTGG	ref_3331_RC	19	31	17	15	34	12	37	18	31	22
GGCACCTCTTTGTGTT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TTTATATTGCGATGTA	ref_3331_RC	47	44	46	44	51	32	51	49	48	44
GGGGCTAGGTTGATCA	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
AAGATCTCATGGATAT	ref_3331_RC	5	6	11	5	2	7	9	1	7	5
TCTAGCTGTAGCCAGG	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
CTTGCCGGGAAAGCGC	ref_3331_RC	9	14	22	10	6	16	13	8	8	20
CGGTCCCCATTTTGGT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TACCACGATTCTAGAT	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
CCAAGACTTACGTCCT	ref_3331_RC	67	64	76	62	60	54	80	36	80	61
TGGTCATGGTGCCCCG	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TTATGCCAATGACGCC	ref_3331_RC	0	0	0	0	0	0	0	0	0	0
TGTCTATATTTATTGA	ref_3331_RC	18	37	9	18	35	20	26	16	37	24
GCCAAGATCTGGCGAA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTTGGGTAATCG	ref_516_RC	27	40	34	27	43	12	48	20	56	17
CATGGGTGATTAGCAT	ref_516_RC	8	13	11	8	11	12	18	10	20	12
TTCATTCAGATGTATC	ref_516_RC	40	37	26	22	39	18	55	26	37	25
TCTAGAACTCTCAAAA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CAAACTATGTTGCATT	ref_516_RC	3	18	13	10	13	7	8	5	15	3
CCTTCGTCTCCATGTC	ref_516_RC	2	4	2	0	4	1	2	1	5	0
GATTATCTGGCTCCTA	alt_516_RC	59	97	55	44	104	48	96	53	121	53
GGCAAAGGACAATTGT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CCCTTCTGCCGATGCG	ref_516_RC	11	18	16	10	22	12	16	10	23	12
GCCGTATTACCCATTA	ref_516_RC	4	11	4	9	6	0	15	1	8	3
GGGTCGCTCAGTCATA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
TTATGTTATCGTAGAC	ref_516_RC	27	25	34	28	48	21	36	29	43	20
GCACATTTGAAAGTCT	ref_516_RC	55	84	71	57	116	54	129	58	121	52
AAGGGTGTGCTTCAGT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CGATGATTCTTAGTTT	ref_516_RC	57	95	60	61	109	55	94	73	106	49
GATTAGAATATTTTGG	ref_516_RC	12	18	6	10	12	5	17	7	12	12
GTCTCCGATGTCATAC	ref_516_RC	57	87	52	56	90	41	87	44	99	38
TTGAATCGGTTTGTTC	ref_516_RC	13	28	13	11	27	8	26	18	34	7
TGGGAACGGTCTAGTG	ref_516_RC	30	50	41	30	38	28	42	24	53	18
ATCTCTCTGCTTGCTT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
TCGCGTTAGCGAGAAG	ref_516_RC	0	0	0	0	0	0	0	0	0	0
TATTTTCCGTGTACTG	ref_516_RC	16	36	19	17	37	19	34	15	38	11
TACTCTTTTTTATCCA	ref_516_RC	29	53	34	25	33	26	42	22	43	18
TAAGGTGGGCTCGAAC	ref_516_RC	61	96	76	63	139	49	123	50	121	55
TGAGCGTGAAGTAATG	ref_516_RC	12	15	10	10	19	13	18	6	19	7
TTTATCCTCTGTACTT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
TTCCCGGCCGTCAAGT	ref_516_RC	9	48	12	9	68	6	50	9	50	12
TGTTAGAAACTACCCC	ref_516_RC	19	91	33	13	83	35	85	21	89	25
CCGTGGCTTTATACCT	ref_516_RC	3	5	5	3	3	3	8	3	3	6
CTTTTGCTCATGTTTT	ref_516_RC	8	7	8	7	18	15	14	3	20	6
GGTCTATTTCCTTTAT	ref_516_RC	1	2	2	0	0	0	0	0	5	1
GCTACTTCGGTCCCCT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTAAGCTCTCGA	ref_516_RC	1	9	8	9	6	6	10	3	13	3
ATCTCTACAATAATGA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CGTGCGGCAAACTAGG	ref_516_RC	10	15	10	15	22	9	18	6	21	10
ATTTTCCATTGGCAAC	ref_516_RC	88	141	81	77	153	74	144	78	124	74
CTCTCCCCCCTTTTTT	ref_516_RC	2	11	5	3	7	3	14	5	9	3
GCTCCACTTCTTAGTA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GCTCGCGTGAGGATGA	ref_516_RC	53	74	68	59	96	59	88	41	121	47
CATATGGGAAACTCCC	ref_516_RC	8	14	18	11	16	9	21	8	31	9
GTGCCTGGTACAATGA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GATGGGTTAACGTTCG	ref_516_RC	27	24	28	15	27	22	38	31	42	21
TGTGATTTTCCTCCTT	ref_516_RC	60	97	83	40	93	42	121	54	108	53
GACTTGGTAAGCCTTG	ref_516_RC	11	14	7	5	17	12	9	17	16	1
ACACCACAGTGCCTTA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
TATTCTCGATGTGTAC	ref_516_RC	16	29	19	21	32	17	34	12	32	18
ATTCTCCACTTTCCAG	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GTGAAGCTAGATCAGC	ref_516_RC	13	22	18	10	21	14	32	9	29	11
GGAGGAGCGTAGTTAA	ref_516_RC	4	8	10	5	16	5	11	3	11	5
AATTTCCGATTTCTCT	ref_516_RC	8	16	12	11	14	6	19	4	19	14
TAGAATCAGTTGGCAA	ref_516_RC	14	27	20	23	26	16	28	13	24	13
TATCGGAATGGTCCCT	ref_516_RC	23	31	26	30	50	25	40	21	35	18
GTTTAGATCTGCATTG	ref_516_RC	14	31	27	12	24	16	32	9	29	14
GCTCCTCGCGAGTAAG	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CATCCTTGGCATTTTC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GGGATCCGCTCTTCAC	ref_516_RC	27	51	35	34	44	26	57	22	67	28
TGTTTTTCCTTTGCTA	ref_516_RC	24	60	34	34	46	30	58	30	62	32
CGGTTTGGCCTGTTTG	ref_516_RC	0	0	0	0	0	0	0	0	0	0
TAATAACCGCCCTTGA	ref_516_RC	3	4	1	8	4	2	3	3	5	5
TGGCGGATTATGTCAT	ref_516_RC	33	73	58	38	67	24	63	45	68	35
TCGCAATATCGATAAT	ref_516_RC	10	16	11	8	20	7	15	7	17	9
CTTAAGGAAGGTAGGC	ref_516_RC	6	13	8	5	19	2	21	4	5	6
TCCGACGATATATGAC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GTTAGTCCTGCCATAA	ref_516_RC	32	66	44	30	43	33	55	39	54	37
TTGGGGCTATCGCCGC	ref_516_RC	48	107	74	51	107	38	139	31	131	44
GTCGTATTTCAGTCAC	ref_516_RC	77	97	68	53	91	70	99	54	110	70
GGCCGTTATTGTTAGA	ref_516_RC	0	7	2	1	5	3	7	4	12	6
ATGTGGCTTCACTATA	ref_516_RC	18	38	22	24	35	21	41	21	53	11
TCCCCAACATTCTGTG	ref_516_RC	14	50	12	11	48	11	29	13	25	7
ATTGCATTCCTATTAT	ref_516_RC	28	87	50	43	86	40	87	43	107	43
TGCCTGTTGTATTCAC	ref_516_RC	1	4	4	1	4	1	11	0	4	4
GGTCCTTTACTGTTTA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CAGCGCTGTGCATACA	ref_516_RC	37	49	29	32	41	22	53	23	62	29
TCTGGAATAGCGTTTG	ref_516_RC	7	16	11	10	17	9	19	10	16	3
GCCGTCAGGGTTTCGT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CTCTACACTTTAGCAC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GTTGGATTGCGGCCCC	ref_516_RC	4	15	4	3	16	11	15	7	22	6
CGTCTCCCTCAGATCT	alt_516_RC	36	85	55	35	89	33	107	44	113	26
CACGACGGACGAATAC	ref_516_RC	13	23	13	12	26	8	21	15	18	7
AAGTATTTCCGCTTGT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CGACTAAGCTCTATAC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CTCCTTGATGCCCGGA	ref_516_RC	7	33	12	6	29	13	28	9	28	7
ATGGAGTCATTGGTCT	ref_516_RC	15	31	9	14	24	8	36	15	23	21
AGCCGGATATTTCAAC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GGGCAGCTAGCTTCTT	ref_516_RC	18	41	18	16	22	16	26	7	30	15
ACTTCTTTATGATTAT	ref_516_RC	21	35	21	15	35	15	29	16	32	11
TTACACGGGTTTTGAA	ref_516_RC	0	0	0	0	0	0	0	0	0	0
TAATATAGGTCATGCT	ref_516_RC	7	25	14	4	17	5	17	10	16	3
CTTGGCGATGGATCCA	ref_516_RC	1	0	1	1	2	0	3	0	3	1
AGCCTGATCTCATGCG	ref_516_RC	23	120	29	19	103	29	125	13	61	15
CGTAAAGACGTGCATA	ref_516_RC	17	63	41	24	64	25	54	23	74	20
TGGTGAATGATGCGTT	ref_516_RC	2	7	2	1	3	3	4	2	5	7
TTCTCTACAATAATGA	ref_516_RC	181	309	169	200	370	176	357	206	369	177
CGAAAAAAACTGTATA	alt_516_RC	12	28	12	8	31	7	27	17	33	18
CCATGTCATGTGCGGG	ref_516_RC	3	4	1	2	5	4	3	3	7	2
TATGGTACGTCGCGAC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CTGCTACCACATTTTA	ref_516_RC	10	25	15	11	34	9	31	8	31	6
CCCGCAAAATAGCTTT	ref_516_RC	29	68	35	23	57	37	52	16	64	23
GTAAAGGTATGGACTC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
AGTTCGTATATTCATT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
CTAGCAAATTCGCTTC	ref_516_RC	0	0	0	0	0	0	0	0	0	0
AGACTCTTTATTACCA	ref_516_RC	6	23	21	14	19	4	23	11	13	10
ATATTTATACGAGGTT	ref_516_RC	0	0	0	0	0	0	0	0	0	0
GAGGATAATCTCGGTT	alt_516_RC	29	45	34	19	21	36	51	25	43	22
TCACCCCACATAGTTG	ref_516_RC	30	78	24	15	86	23	116	21	128	19
CTGCCAGAAGTGTCCG	ref_516_RC	14	23	23	25	30	25	39	15	34	19
AAGTGGTCTTTCGATT	ref_516_RC	3	5	5	8	3	3	10	1	4	0
CTTATGTGAGCGAAGC	ref_516_RC	11	23	10	5	12	8	11	11	19	7
GAGCTCCTCGGTGTAG	ref_516_RC	56	83	63	46	80	42	76	34	73	39
TACCTCGCATGGTGAG	ref_516_RC	26	50	30	26	23	19	40	18	43	16
TATGCACCGCCTTAGA	ref_516_RC	75	134	96	59	133	77	124	75	124	72
GAGCTTTTCACAATAA	alt_3262_RC	46	54	58	56	62	48	77	51	77	41
CTTTCTTCCCTCTCGT	alt_3262_RC	38	46	55	41	40	41	41	33	27	32
TACTCTGTTCATCAGT	alt_3262_RC	21	22	21	14	29	15	24	18	30	11
TTTGCTGCCCCCTATT	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
TTGAAATTTTAAATTC	alt_3262_RC	43	17	36	37	20	24	32	25	46	26
TGTATAGGAGGAAATT	alt_3262_RC	138	106	156	123	126	121	162	119	145	130
CAATGCGGACAGAGCA	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTTCGAGTCTAT	alt_3262_RC	134	182	161	131	182	148	192	141	223	108
GTTGGCGCTCGCCTGA	alt_3262_RC	24	26	37	33	31	26	22	28	30	32
CTTGAGCGTCATTGTG	alt_3262_RC	43	60	58	53	45	37	51	45	56	40
CACTTTTCTGACTTAC	alt_3262_RC	59	55	60	52	66	40	65	46	65	34
CATCGAGCGCTAGCAG	alt_3262_RC	74	80	88	77	91	66	87	67	85	62
TCGGGTATGTGCTATT	alt_3262_RC	6	11	9	10	5	7	9	4	13	6
ATTGCGTGGAGCTAGC	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
GCGCGGTGGCAACTAA	alt_3262_RC	95	101	100	121	111	123	105	103	149	110
CTATCGTTCCGTCACA	alt_3262_RC	43	47	41	27	62	28	51	40	41	41
ACAGCATATTATAAGG	alt_3262_RC	27	33	25	19	33	14	32	22	37	14
GCTCTAGGGTCGATAA	alt_3262_RC	41	37	41	39	42	31	43	31	36	22
CCCCATTGCGCCAGCT	alt_3262_RC	8	16	11	12	14	12	19	20	14	15
AAATACATTGTTATTT	alt_3262_RC	237	231	257	220	253	194	262	184	243	167
CCCTAGGTTGGCTGCT	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCTACGTTGTTA	alt_3262_RC	9	3	3	4	16	5	15	9	7	3
AGCGAACGTGGGAGCC	alt_3262_RC	25	19	25	16	16	25	22	16	16	25
TTTCCGTGTGATTTTT	alt_3262_RC	72	62	72	54	73	50	80	50	70	63
ACGCATCAAGGTCTAT	alt_3262_RC	187	185	211	163	216	154	186	178	240	149
TCAGCTTACTTTTGGG	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
GTTCACTCAGCATACT	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
AACATTTCTCGTCTAT	alt_3262_RC	20	16	18	16	15	16	23	19	17	8
CCTCGTAATTTCAAGG	alt_3262_RC	3	3	3	1	2	4	4	4	5	1
TCTCCTTCCGCGTTGC	alt_3262_RC	48	74	79	72	82	52	70	73	83	50
CACGAATCCCCATCTT	alt_3262_RC	2	9	1	2	10	3	8	0	17	5
CAAAAGGTGGCTTGGA	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
TCAAGTCCGCGGGATA	alt_3262_RC	47	40	69	50	42	47	46	57	42	29
TGTTTTGGGCTGCCCT	alt_3262_RC	17	20	10	11	14	19	15	12	24	9
GCAGGGGCTCTGCGCT	alt_3262_RC	15	16	9	14	11	14	15	13	9	16
TTATGAGTCGTTAGTT	alt_3262_RC	15	24	20	17	21	30	42	16	37	15
TCGAAAGTCTGGGCTC	alt_3262_RC	4	4	9	12	5	6	10	4	14	4
CCCGGTCCCGAGCTTG	alt_3262_RC	92	154	118	104	207	107	187	95	182	92
AAATAGGGGAAGATGT	alt_3262_RC	0	0	0	0	0	0	0	0	0	0
TACAGCAGGGCGCGGA	alt_3262_RC	7	2	5	8	6	5	5	2	7	6
TCCTCTGAGTTGTTAG	alt_3262_RC	51	67	39	44	62	34	61	28	54	48
TCCTACATGTTACGCA	alt_3262_RC	76	93	131	105	84	92	108	113	105	116
TGTCTGGATTAGCAAT	alt_5199_upstream	55	98	73	34	67	48	104	30	94	39
TGAACGTAAGCTGTCA	alt_5199_upstream	10	32	28	17	32	18	40	9	35	14
GTCGCACCCTTGTGGA	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
CATAGAAGGAGTCAGT	alt_5199_upstream	75	16	77	64	13	36	11	48	10	38
GGAGCTTTGATCGTCT	alt_5199_upstream	22	56	22	17	57	20	49	26	41	23
TTGTGAACCCGCCTTA	alt_5199_upstream	15	37	22	12	36	18	26	19	35	8
ATTTCTAGGTTGCACT	alt_5199_upstream	6	33	15	10	27	12	21	8	18	8
TTCCATTGATCTGTGG	alt_5199_upstream	2	1	0	2	4	0	4	3	1	1
GTTTAAGCCACTTCGG	alt_5199_upstream	2	12	3	6	8	3	5	3	5	3
GCTTATTTGTCCTTGT	alt_5199_upstream	16	14	17	12	19	12	18	13	20	7
CGACGGCGAGTTTGTA	alt_5199_upstream	60	94	65	61	84	44	83	60	102	51
TCCCTCGCCGGTACCT	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTTTCGATCGACA	alt_5199_upstream	19	35	27	19	29	22	22	10	26	10
GAAAGCTCAATAAGCC	alt_5199_upstream	19	41	25	28	29	17	28	17	37	23
TGGTACTCATCAGGAC	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTGTACCTGCCCG	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
TGTAACCCTGTGAGTA	alt_5199_upstream	7	17	6	6	19	5	11	7	8	7
TTGTGCTTCCTGTTTG	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
CCATGGAAGGATTCCG	alt_5199_upstream	5	10	5	4	7	8	11	11	11	9
CTCCCCCTATCCACTT	alt_5199_upstream	3	15	0	1	13	0	13	1	12	1
TCTCGGCGTATGTCTC	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTTGTCCTTTATT	alt_5199_upstream	12	17	16	9	21	17	25	7	24	8
GCTCTGTAAGTCTTAC	alt_5199_upstream	11	11	17	9	16	7	19	16	20	10
AGGTGTGTACCTTTTT	alt_5199_upstream	6	15	14	8	14	11	13	12	16	4
TTATCACTTGTCGATA	alt_5199_upstream	24	36	28	19	26	15	56	22	35	20
GCCTAGCCGATCAGAC	alt_5199_upstream	1	0	2	0	1	3	2	0	6	0
GAACGAGCTGAAAGAG	alt_5199_upstream	0	0	1	0	2	0	1	0	1	0
GGGCTGAGTGTGGCTC	alt_5199_upstream	21	22	12	15	26	10	30	14	29	12
GTGTGGTAATTGTCTG	alt_5199_upstream	2	6	0	2	7	2	6	3	10	4
GCGTTTCTGACGGACG	alt_5199_upstream	13	27	22	10	32	11	46	9	33	13
TGATCAGGCCTCGAGT	alt_5199_upstream	8	13	8	2	17	6	15	9	8	6
TTGCGTGTGTAATCAC	alt_5199_upstream	36	57	56	43	59	44	63	36	61	24
CATGTCTTTGCTCTGT	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTTGCAGTCGGGA	alt_5199_upstream	11	26	11	8	16	13	12	8	17	10
CTCTTGTATGGATATT	alt_5199_upstream	0	5	2	2	1	2	4	2	4	1
TTTGTATCACACGTTT	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTATTGCCAGACG	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
ACACGTATCATCCTGG	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
GACGGGCGGAGGCGAT	alt_5199_upstream	16	25	22	15	33	10	31	18	34	16
GGCATTCGTATCCTCC	alt_5199_upstream	11	26	15	24	32	15	23	18	26	14
CTTTGTCAATCGCATC	alt_5199_upstream	28	47	37	44	43	21	52	19	59	25
TACTACTCTGCCTGTC	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGAGTGCAAGCTG	alt_5199_upstream	84	116	94	81	111	81	108	72	121	57
CTCATCGTTGCAGCAT	alt_5199_upstream	23	31	29	17	24	26	39	25	34	20
TATTTACTTCACCACT	alt_5199_upstream	5	6	4	2	6	2	7	1	10	3
GCCTATTAATGATAGA	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGCATATTTACCA	alt_5199_upstream	0	4	0	0	0	0	1	0	0	0
GAACTGCTAATAGATC	alt_5199_upstream	3	4	9	2	15	1	7	1	6	1
TGGGCCGGAAGATGCA	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
CATTCATCTCTATCAT	alt_5199_upstream	8	14	9	4	12	10	16	6	16	7
GCTTGGGTGTTAGAAG	alt_5199_upstream	42	85	55	39	70	48	82	39	82	40
GAAATATCAGCAGGGA	alt_5199_upstream	24	28	31	15	38	21	43	21	33	30
GTTCATTTTAGTTAGG	alt_5199_upstream	10	24	16	7	21	13	35	12	22	6
CGCAAGTGGGGCTGAA	alt_5199_upstream	12	39	16	26	34	15	39	11	33	5
CCCTGGACAGCATTGA	alt_5199_upstream	12	40	16	7	44	6	33	6	29	10
CAATGAATATATCCTG	alt_5199_upstream	6	19	6	7	9	12	17	8	18	5
TTTCTGCCCGGTAGAT	alt_5199_upstream	34	47	41	31	54	36	42	34	53	27
ATCACCGTCTCGCAAG	alt_5199_upstream	36	33	19	20	50	17	40	27	46	21
CTGCTCATATACCGTC	alt_5199_upstream	22	32	12	7	32	15	34	16	38	19
GATCGGGGGCGTACTC	alt_5199_upstream	17	24	10	11	27	20	15	12	23	14
TATCTTTTTGTCTTTC	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCTCACCCTCCAG	alt_5199_upstream	4	14	7	2	17	1	20	2	11	3
GCTCATTCATCTTCGA	alt_5199_upstream	3	23	21	16	21	17	22	5	14	15
CGCGGGTTTTAACGTC	alt_5199_upstream	1	5	4	4	2	0	3	3	4	1
GCTCGCGTTCAATTCG	alt_5199_upstream	2	2	2	3	5	4	6	2	8	2
GGAGGTCCAGTTTTTG	alt_5199_upstream	82	149	112	90	177	93	190	73	195	84
GGGGGTACAGATAGTT	alt_5199_upstream	16	35	23	14	27	16	24	14	26	19
GGCTGGGTCGCCACGT	alt_5199_upstream	45	51	39	32	50	39	54	33	69	32
CAGCGTACATTATGGT	alt_5199_upstream	39	75	53	36	97	39	73	46	76	32
TATGCTACAAGTATTT	alt_5199_upstream	0	0	0	0	0	0	0	0	0	0
AGACGTAGCTAATGCC	alt_5199_upstream	10	24	8	6	24	11	33	10	16	10
CCTTTTCCTTCGGTTT	alt_5199_upstream	30	27	18	18	42	23	23	23	34	22
GCCACCGGGACCTTAC	alt_5199_upstream	3	7	2	3	3	1	2	2	6	1
GACCCCGCCAACCTCT	alt_5199_upstream	19	74	35	21	62	28	56	27	69	37
GGCGCCGTCATGTGGT	alt_5199_upstream	7	9	13	11	13	4	8	7	24	3
CTCTTGGGCATGAAGC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGCTCGCGCATAT	ref_5268_reverse	18	17	13	22	17	13	13	12	19	5
TAGTCCAAGGGGGAAC	ref_5268_reverse	19	34	21	14	51	12	23	23	22	16
GGAAGCCCTGGAAAAC	ref_5268_reverse	28	40	36	24	63	25	34	34	48	38
ATGTACAGCTAAGTTT	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTTTACTGGTTGTGGA	ref_5268_reverse	3	3	1	1	5	4	3	2	1	2
CAGTTGATCGCCGTGA	ref_5268_reverse	45	60	45	36	61	30	72	38	78	30
TACCGTGGCACCATAC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
ATATGACAAACCTAAA	ref_5268_reverse	1	4	7	1	3	2	1	4	2	2
AGGAGGTTGAGACATT	ref_5268_reverse	26	40	29	32	33	21	59	38	61	23
CATGGCTTTTCGGGCG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGGCACCCTGCCT	ref_5268_reverse	15	27	22	14	17	11	19	10	23	13
GATCAAATCCCGTATA	ref_5268_reverse	3	12	6	1	11	5	11	3	9	1
ACCGTTGCATGTGACC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CTTACCGAATGCAGCT	ref_5268_reverse	51	122	64	58	155	40	142	50	157	54
GTGCTCTCAGGCCGTC	ref_5268_reverse	25	19	15	19	29	27	26	25	22	12
GCAATAGGATTACCTT	ref_5268_reverse	24	40	32	33	64	26	48	23	40	26
TATACCAGAGTTGGAG	ref_5268_reverse	1	1	4	1	4	2	3	3	2	2
TCGCTTAAGTGAGTCA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CGGTACTTACACCGGG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTCATTTTTGTAT	ref_5268_reverse	15	32	20	17	19	10	25	14	22	16
TGTATACCACGGATGA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGGCAGGTGATTG	ref_5268_reverse	30	67	32	45	64	53	70	34	72	25
AACAAGAAGTGTATAA	ref_5268_reverse	2	9	7	2	18	9	12	5	12	5
TCACGTACAACGTTAT	ref_5268_reverse	17	19	16	20	22	16	21	17	25	14
TTGATATTCGTGCATC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGGCTATTACAG	ref_5268_reverse	8	5	9	8	10	11	10	12	7	5
TGGGGTCGAAAGTATT	ref_5268_reverse	28	59	38	33	51	26	48	36	75	35
GGGCATTAGGCATGGT	ref_5268_reverse	0	7	6	8	3	5	10	5	6	4
TACTGTGCTTCGACTC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGGCACTTAACTG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
ATTAATCTGTTAGTAT	ref_5268_reverse	5	7	5	2	6	5	8	4	8	7
ACGGGAGCGTCCCCCT	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTCAAGCCTCATAATA	ref_5268_reverse	7	8	7	5	5	4	1	5	16	5
CCTAGTTCTGATGAGC	ref_5268_reverse	8	8	4	8	4	3	3	6	4	6
CTCTGGCGCGGATGTT	ref_5268_reverse	32	40	37	29	33	38	45	27	51	29
CATTTTTAGTCAGGTC	ref_5268_reverse	0	3	2	1	0	2	5	0	3	3
TGGTAGATACTATATT	ref_5268_reverse	27	32	36	19	40	25	41	21	39	17
GAAAGGAGATTCTAGC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTATGCCGTTCATGTC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGGGGCCATGAAT	alt_5268_reverse	45	47	43	34	60	44	54	29	46	34
GCGGTCCGTCGCCTTC	ref_5268_reverse	0	0	0	0	1	0	1	0	4	0
CGAGGGCATTTAACTG	ref_5268_reverse	12	25	20	14	26	16	25	10	16	15
TCTTTAGTTGAGTGGG	ref_5268_reverse	11	14	10	10	7	7	15	10	15	14
ACCATTATGTGATGCA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGCTGGGTCGTTA	alt_5268_reverse	25	30	26	28	39	22	45	28	37	11
TGTGGAATTTGGGTTA	ref_5268_reverse	57	88	67	55	90	41	96	38	103	36
TTCGTTATTGGTGTCT	ref_5268_reverse	42	54	56	42	51	43	59	32	74	32
CTCATTTTCAAGTTTG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGATCTCAGTACG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGCCCTTATTATC	ref_5268_reverse	4	35	4	9	42	4	35	6	42	9
ATTACATTTCGGGTTA	ref_5268_reverse	67	71	67	46	78	58	86	51	74	62
GCATGACAACATTTGG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CACATAGGACCTTAGT	ref_5268_reverse	103	177	112	128	186	106	207	107	199	93
CAGTTAGTTATGAACC	ref_5268_reverse	29	61	40	31	65	28	64	40	65	29
TGACGAAGATATTGTC	ref_5268_reverse	14	8	9	16	8	9	10	3	11	5
CTTAACACATAGTTTC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGTCGTATGGAAG	ref_5268_reverse	10	14	9	12	19	8	18	10	19	5
CTCGAATGGTCTGTCG	ref_5268_reverse	20	19	17	10	22	13	30	18	26	14
TTCTGATGCGCCCTTC	ref_5268_reverse	29	28	25	13	8	13	42	16	30	21
GCTGTCGCAGCGGCGT	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTCATCCGTCAT	ref_5268_reverse	4	1	2	1	1	1	2	0	1	2
AACGCAATTTTAAGAT	ref_5268_reverse	13	16	19	13	19	11	10	10	14	11
GCTACTTTGGTTATCG	ref_5268_reverse	93	207	98	98	216	67	214	77	235	105
AGCAGATTATGGTTTC	ref_5268_reverse	9	15	6	7	8	8	10	1	2	8
AAGCCGAAGTGTGAGT	ref_5268_reverse	5	10	6	6	12	6	4	12	15	10
GATCGGTGTGCGGATA	ref_5268_reverse	35	28	43	39	33	26	49	26	45	26
TGACCATCATTCAGCG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCATGGTTCTATA	ref_5268_reverse	10	7	7	10	10	16	16	8	13	8
ATGGCTATTAACGAGT	ref_5268_reverse	9	21	24	19	26	11	20	11	8	11
AGCATGTAAGGTTGGG	ref_5268_reverse	9	10	13	8	8	10	18	10	17	6
AGCGTCAATGTTCGTA	alt_5268_reverse	262	443	309	268	419	217	457	280	480	216
GTACCCCTTCTAATTT	ref_5268_reverse	195	281	225	210	346	175	313	161	351	188
TTGCTTGACCTGACCG	ref_5268_reverse	65	76	62	59	73	34	79	37	82	35
TCATCTTCGATTGTTT	ref_5268_reverse	33	41	48	37	41	54	42	32	65	22
GAGATGCCTCGTCCCA	ref_5268_reverse	12	16	11	10	26	14	21	18	18	8
GTCTCTTTTGGACCTA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CGATGTCTTGCTTTAA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGCCACGGCGTCA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
ACCATAAGTGCGTGAG	ref_5268_reverse	13	8	8	6	10	6	9	11	7	14
ACTGAGTATGCTTTTC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TCATCTCTGTTATGTA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GGTACCACTGTATGAC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCATAAATATCGG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGGCCCCCTGCCT	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
AGATAAGATCATTAGA	ref_5268_reverse	143	218	175	147	245	152	217	137	254	139
TATCGTTAGACAGGTG	ref_5268_reverse	4	23	14	10	12	9	18	13	18	8
TACAGCCGCACAGTGT	ref_5268_reverse	32	53	45	23	58	52	82	42	69	31
GATCCGCTTTTTGGTT	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGAAATGCCCCGT	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
AACCTCAGTGTTGTAT	ref_5268_reverse	3	5	2	2	7	8	5	1	3	3
AACCTCCTATCATTTG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCTGGTTATTTGG	ref_5268_reverse	30	46	36	37	41	42	38	28	45	19
TTTGTCTGTTCCCGCG	ref_5268_reverse	7	13	10	5	11	6	16	4	8	3
CGTTGCACATGAGAAG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCCCCGCACAACT	alt_5268_reverse	20	104	59	54	93	46	110	27	90	31
CTTCGCGTAAATTTCG	ref_5268_reverse	3	17	3	8	7	1	10	4	13	4
TAATAAGGTTTTGCCT	ref_5268_reverse	27	48	47	44	62	51	47	28	49	36
AATTCTATACCACGAG	ref_5268_reverse	20	23	31	20	26	15	24	12	24	9
TTCGGGCAAGACCGTG	ref_5268_reverse	10	21	14	14	19	13	18	7	20	11
ACGCAGCAAACATTCT	ref_5268_reverse	4	18	5	10	6	4	3	4	12	5
ATGCGCACCCATATGT	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CATAACGCTTATTTGG	ref_5268_reverse	48	80	47	42	86	35	76	48	90	48
CTTGATTCGATCATCC	ref_5268_reverse	22	21	31	23	30	25	48	30	39	28
GCATTACTGCGGGTAG	ref_5268_reverse	42	61	49	42	79	39	45	62	74	36
TTTCAGATTCCTACGT	ref_5268_reverse	11	12	16	13	11	12	25	11	29	14
ACGTCGTAAGCTCTGG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTATACACTATACTGG	ref_5268_reverse	4	8	10	3	8	3	8	4	12	1
CGTGGACGCGACCGCC	ref_5268_reverse	6	13	0	3	15	3	6	3	4	4
AGATATGATCATTAGA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTGCCTGGCATAG	ref_5268_reverse	93	131	89	80	118	79	122	54	142	80
GCGACAGGTCTCCCGA	ref_5268_reverse	10	10	11	9	9	7	16	11	10	5
TAAATATTTCACGGGT	ref_5268_reverse	18	13	22	15	12	24	19	15	10	11
TAAGTTTACTTCGTTT	ref_5268_reverse	3	6	0	3	4	5	4	1	3	5
TACGTATTCGGTCTGA	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAGGTTCCACAGG	alt_5268_reverse	78	83	86	59	95	79	120	77	106	61
GCTAAATATCCCCATG	ref_5268_reverse	50	66	55	53	59	43	58	46	67	49
CGAATTCAGACTGACC	ref_5268_reverse	41	56	52	56	67	43	69	43	68	30
CAGAGAATTTCCTCGC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
GTATATCGGTCAATGG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGATTTCCAAAGT	ref_5268_reverse	1	3	8	1	5	1	2	5	5	8
AATTCGTCTTTAAAGC	ref_5268_reverse	72	90	81	58	95	72	95	47	112	45
TATATTGTGTGTAGCG	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
CAATCCGGAGTAGTTT	ref_5268_reverse	65	99	91	77	137	75	111	49	135	63
GTGCCCTAGTCCAGGT	ref_5268_reverse	7	4	1	4	11	0	5	2	5	2
TCTATTAAGGGCATTC	ref_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGGATCGGCTTTATAG	ref_3746_upstream	4	9	11	4	6	13	6	7	10	7
TCCCCCTAACTCCCTG	ref_3746_upstream	57	86	92	53	87	62	81	73	91	68
CACGCCGTTTCGGCGG	ref_3746_upstream	23	27	12	14	32	17	27	18	31	12
TAAGCCTCTTGTCGGG	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGGCATAACTGTC	ref_3746_upstream	8	29	17	9	42	15	28	10	39	9
TGGTCCGCGTTCACGA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
CAGTAGTTAGGTTTCT	ref_3746_upstream	9	20	12	1	16	3	12	12	18	7
CCATGGACGAATTGCC	ref_3746_upstream	2	14	7	11	13	3	7	5	4	5
AAGGATGGTGGCTTGG	ref_3746_upstream	244	368	313	252	386	278	414	261	389	201
TAAGCTGGCTTTACAG	ref_3746_upstream	18	21	17	8	18	10	13	12	26	9
GATTTTCTGACATAAA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAAGCGAGTCACC	ref_3746_upstream	65	107	83	88	104	80	106	66	103	62
TTTAAGACGTTTGTGC	ref_3746_upstream	21	42	35	24	31	26	35	25	36	26
GTGTCGCAGCTTTAGG	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCTCGAGAAGGC	ref_3746_upstream	19	27	17	21	46	12	34	15	30	12
TGTGGTACCTCGATAA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCACTCTTTCTGT	ref_3746_upstream	13	12	18	14	23	8	15	16	23	9
CCAATTGTCGTTTTTT	ref_3746_upstream	15	40	23	18	15	12	22	17	30	16
ACCGACGGCTTTGTAT	ref_3746_upstream	7	15	14	6	13	8	15	12	19	9
TTGATGTTCCGTCGAT	ref_3746_upstream	32	34	28	31	32	28	42	24	45	23
CCCACTATTTCCATGC	ref_3746_upstream	6	13	4	3	12	7	16	4	9	8
ATTCTACATTACTGGT	ref_3746_upstream	71	108	82	79	88	79	97	63	94	59
ACATTTAATAAGTTCC	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TATAACTAAGCTCCAC	ref_3746_upstream	27	42	36	23	38	27	27	18	50	19
GTCTGTACCGGAAGCG	ref_3746_upstream	17	52	27	29	52	40	40	37	42	25
TATTGCAAATGTCCCC	ref_3746_upstream	27	21	16	20	33	16	17	13	29	21
GTCATTACTCTAAAGT	ref_3746_upstream	24	35	26	25	32	22	39	42	37	26
TTGGATTCACTTTTTC	ref_3746_upstream	38	40	37	44	50	29	55	35	33	29
ATTGTTTGTTCAGAAT	ref_3746_upstream	77	88	80	58	132	71	124	81	118	72
GCTGTATCTGTATTGC	ref_3746_upstream	2	10	6	6	11	2	17	5	6	8
ACTTCTAGCCGCGTAT	ref_3746_upstream	81	99	85	59	92	50	97	66	110	64
GAATCCATGTGGATTT	ref_3746_upstream	11	7	2	5	5	5	10	5	7	9
GCGCATCTCTCTGTTT	ref_3746_upstream	22	41	28	21	41	20	40	22	44	19
TCTTCATAAGTATTTG	ref_3746_upstream	45	60	55	44	91	44	91	50	77	39
GCCTGCTTTTTCATCG	ref_3746_upstream	257	514	336	299	554	274	557	312	515	245
TTCACGGGCCTAGAGT	ref_3746_upstream	9	23	10	9	21	11	18	6	23	9
GCCATTGCTTAACACC	ref_3746_upstream	14	25	17	10	32	10	25	13	25	9
GAGGAATATTTTTTCG	ref_3746_upstream	22	19	27	13	36	20	25	22	21	24
CTTAATTTGCCGTTTC	ref_3746_upstream	2	5	3	3	9	1	1	1	8	3
GGGTGCGTTTCTGATT	ref_3746_upstream	20	31	26	22	47	18	31	17	40	17
CCTTGTTAACTTTCTT	ref_3746_upstream	147	205	188	147	196	130	222	135	210	149
CAGTACCGCTACCTGA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
GCCTATGATGGTCCAA	ref_3746_upstream	3	9	9	2	5	2	8	2	7	3
AACCTATTCGAGCTTT	ref_3746_upstream	18	31	26	31	47	24	37	21	28	18
ACAGTCTCCCTGTGGC	ref_3746_upstream	4	25	2	6	16	5	40	1	29	6
AACCCAAGTAATAGGG	ref_3746_upstream	54	84	56	53	81	45	79	52	97	60
CGCTGGTTGCTTTTTT	ref_3746_upstream	1	1	1	0	4	2	3	1	3	0
TTTTGTTTATACCTCT	ref_3746_upstream	45	55	49	44	55	32	68	39	59	40
TGACTCTGGCCTCGCA	ref_3746_upstream	16	27	28	17	36	23	46	16	62	16
ACTCTTGACAGCAACT	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTCGCCTGCACAA	ref_3746_upstream	29	44	38	23	62	32	49	20	40	32
ATTCCCCAGGTTCACG	ref_3746_upstream	195	253	176	187	275	174	290	161	268	198
ACTTGAAATACGTTAG	ref_3746_upstream	24	21	15	24	19	13	29	14	23	13
TTTCTGAAATGGGTCG	ref_3746_upstream	251	312	308	257	312	266	310	262	340	198
TTAATTTTGGAGAACC	ref_3746_upstream	33	50	36	26	50	25	43	21	45	20
ATGGCATATTATTAAC	ref_3746_upstream	27	44	37	37	55	33	60	23	80	20
AAAAGTAGTGATAGTG	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
CTTCACCCATAATGTC	ref_3746_upstream	36	31	20	28	38	24	34	15	43	19
TGTGTCATTATCAATT	ref_3746_upstream	40	58	31	33	60	33	47	42	67	40
ACCACGGGGTATGCCA	ref_3746_upstream	37	41	48	40	57	32	68	39	62	36
AATCTGGAGGTAGGCA	ref_3746_upstream	10	12	24	21	24	13	14	16	26	7
GACCCTACGCAATCGA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TGTATTTATTGCCGGA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAATTGGGTAGGT	ref_3746_upstream	2	8	4	1	3	3	12	7	16	6
AATAGTCAGCCTACGA	ref_3746_upstream	16	20	26	11	22	15	36	10	19	16
TACTGAGGCTGCCGGA	ref_3746_upstream	33	32	37	26	33	24	31	29	51	17
TCATGGTCCCACTATG	ref_3746_upstream	55	60	44	51	55	41	76	34	70	41
ACTTCTATTTCATCAG	ref_3746_upstream	10	22	29	12	26	15	11	10	20	12
CACCCGCCTCATGCGG	ref_3746_upstream	23	31	26	22	32	21	47	13	25	13
TTCTGTCCGCTGTATC	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TCTATCATTAGCGCTC	ref_3746_upstream	17	31	26	17	23	22	16	14	26	22
CACGCATGTTTACAAG	ref_3746_upstream	42	80	75	49	56	42	71	42	63	40
TGAAAGGGGGACGACG	ref_3746_upstream	27	23	33	37	33	51	25	19	44	20
TTTGAACATATCCGGT	ref_3746_upstream	2	9	2	5	1	5	4	8	4	1
GAGAGTTAAGGGGGCC	ref_3746_upstream	7	6	8	7	9	4	14	3	6	8
ACTAGTGTCTGACTGG	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TACGAATGTATGTTAC	ref_3746_upstream	49	76	47	43	70	43	53	49	73	44
ATGCCTGCTCTAGTCC	ref_3746_upstream	19	22	18	19	19	11	19	9	13	12
ACGGGCACAATTTCAT	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
GGCATCATTAGATATC	ref_3746_upstream	102	146	114	113	141	96	175	91	165	101
TCTGCCCTCCACCTGA	ref_3746_upstream	173	245	185	158	229	151	264	168	233	137
ATCTGTGCCTATCTGC	ref_3746_upstream	13	19	16	11	11	11	16	11	27	8
ATTCGAGTCCAATGTC	ref_3746_upstream	43	59	38	40	53	46	68	34	53	34
GCGGCCGTCAGCATAA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTCGCCCTCACTC	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TCCATGTCCTCTCCAC	ref_3746_upstream	85	85	99	87	101	68	104	56	105	64
GATGCGATAGCTGTCG	ref_3746_upstream	11	17	17	19	18	17	23	10	34	16
ATGCTTACTAATAATG	ref_3746_upstream	47	61	54	61	55	49	73	36	68	57
CCCCCTTCCCCCTCCA	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
TCTAATTCTAGTCAGC	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
GCACTTACCACGTTTA	ref_3746_upstream	2	13	4	1	16	1	25	2	24	5
CTAGGCATTGGTATGG	ref_3746_upstream	31	47	22	31	49	24	60	32	44	36
CCGCTCTTCTGTTTCT	ref_3746_upstream	38	30	36	31	29	31	43	39	47	29
GCAAACCCAATGGTTT	ref_3746_upstream	29	42	34	32	56	30	60	20	59	18
GGACTATCATGTTTCA	ref_3746_upstream	153	182	176	135	209	142	175	140	233	131
TCAAGACTTGTCGCTG	ref_3746_upstream	10	32	29	20	25	21	15	10	22	12
GCCAGTTAAATTCGCG	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
CCTGTATTACTTCCTA	ref_3746_upstream	75	97	80	66	121	61	109	78	127	57
TACTGAGGCTGGCATC	ref_3746_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTTAGTTGCAACT	ref_3746_upstream	22	15	13	16	22	19	21	16	28	12
GTATCTCATCTTAGTA	ref_3746_upstream	52	56	58	51	68	49	91	46	71	46
TCGTATCATACTTGCC	ref_3746_upstream	46	97	55	39	104	52	106	50	134	43
TTTCGTATATCCTTCG	alt_5666_new	0	4	10	3	2	4	3	2	5	4
TTGCTTACGACCATAG	alt_5666_new	0	0	0	0	0	0	0	0	0	0
GATTAGATTGGTTGCA	alt_5666_new	0	0	0	0	0	0	0	0	0	0
AAGTAGATTACTCTGC	alt_5666_new	30	45	39	36	52	37	56	31	67	34
ATGGTATCTCATATGA	alt_5666_new	18	23	25	16	25	23	30	22	26	20
TTAATATTTACTGTGA	alt_5666_new	31	27	29	23	41	22	35	26	41	25
CGAGGATTGCAGGCCT	alt_5666_new	0	0	0	0	0	0	0	0	0	0
TCATTTTACGGGTGTA	alt_5666_new	48	66	77	38	64	45	81	45	77	49
GTTTCGCAATATTTAT	alt_5666_new	32	52	79	35	53	45	65	40	70	49
CTCTCCCGCAGTAGCA	alt_5666_new	13	24	12	14	27	8	21	16	22	14
TTATCCAACAGTAGAT	alt_5666_new	43	58	47	34	61	51	71	46	69	34
CATCATGGCTGATAGA	alt_5666_new	0	0	0	0	0	0	0	0	0	0
GACGCCAGCGGTGCAA	alt_5666_new	5	8	7	3	6	10	6	2	2	3
GTGTGAGTTCGACTAT	alt_5666_new	20	37	41	25	49	31	47	20	49	29
TTCCTCCGTGTCGGGT	alt_5666_new	9	4	5	2	8	3	1	3	6	2
ACCCCAAGGCGGTCGT	alt_5666_new	26	34	26	28	26	22	32	26	31	20
CTATTTTTCAACGGAT	alt_5666_new	20	30	33	18	30	19	28	18	27	18
TCCCATGCGGCCGGTG	alt_5666_new	16	49	19	14	31	12	31	10	40	14
CGGCGTGGGGCGTACA	alt_5666_new	20	41	47	38	46	42	44	32	52	28
TCTTGTGGGACATTTT	alt_5666_new	51	54	58	53	65	46	58	41	78	43
TACTTGGATCATCACT	alt_5666_new	0	0	0	0	0	0	0	0	0	0
ATCAGACTACTTCACT	alt_5666_new	41	73	74	56	78	60	81	54	78	56
GTATGTAGGCGGTATA	alt_5666_new	0	11	2	4	7	6	7	7	7	4
TGTTCCGCGGGACTCG	alt_5666_new	26	25	28	27	29	24	32	22	34	13
GCCTCTATGCTGAGTG	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CATTCTAAGCGTCTTT	alt_5666_new	2	7	3	4	6	5	1	2	3	3
GTTTCGATCCTTCCGA	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CATGATAACAAGGTAC	alt_5666_new	100	119	138	96	133	107	120	92	118	87
TTATTCTAGGAGGGTC	alt_5666_new	23	35	30	27	39	26	38	30	44	19
TCGGCGGCACTGATGG	alt_5666_new	38	44	54	43	67	31	52	32	58	37
GCCAGCTGACGTCTTG	alt_5666_new	0	0	0	0	0	0	0	0	0	0
AAACGTCTACTGTACG	alt_5666_new	2	12	8	4	7	4	5	4	9	3
AAGTGAGCTATGATGG	alt_5666_new	28	15	36	43	20	36	16	34	19	28
TGATCTCTTCTGGACG	alt_5666_new	3	5	8	9	9	8	15	5	9	8
CCCTGATGTGGACGCT	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CATTTGATGCTTGTAC	alt_5666_new	2	6	5	0	1	0	3	2	3	3
CTTTGCATCTTTTTGT	alt_5666_new	2	2	3	4	3	2	1	1	3	2
GCATGCTGCAAGATTT	alt_5666_new	24	32	43	23	42	19	34	24	44	24
GTCGGCACTATAAGAG	alt_5666_new	8	3	5	6	6	2	5	3	8	1
CCGTATTGTAGATTAG	alt_5666_new	10	11	6	5	8	9	9	11	15	11
GTGATTTGTCTTTAAC	alt_5666_new	4	23	8	5	14	8	7	7	11	5
TTTATGTTCCGTTAAT	alt_5666_new	10	17	16	22	25	16	15	7	10	9
CCTCTGTGTCACAGAG	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CAGCTGAGGACCTGCC	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CTCCGTTGCACACGAA	alt_5666_new	0	0	0	0	0	0	0	0	0	0
TACGGTTATTTACTGG	alt_5666_new	7	10	9	5	6	6	13	6	13	9
TCGGCTGAACCATTTG	alt_5666_new	9	23	5	13	10	5	23	10	5	9
GGGGCTGGTTAACATT	alt_5666_new	9	30	26	18	20	18	20	19	28	20
GAAGGTCAATGGATAC	alt_5666_new	22	44	44	43	39	28	34	40	56	30
CATTAGGGTTTCTCAC	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CGGTCTACTATCCGTT	alt_5666_new	4	19	11	1	25	4	23	5	10	3
CCTGCGTTTCCCTTTA	alt_5666_new	11	12	8	7	17	9	17	9	15	7
CCTACATCCTATTTTA	alt_5666_new	27	38	25	25	54	26	42	16	33	21
GGCTGGATTTCCTTGG	alt_5666_new	14	16	11	16	16	15	20	16	15	11
GCTCTGAGTATATTAA	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CTATTTAAGTGGCCGA	alt_5666_new	3	3	2	1	3	0	3	1	1	3
GTCTCATCTAGAATAG	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CTTTGTTTTTCGTTTG	alt_5666_new	31	47	25	26	39	29	27	15	44	30
ATAGTTTACGCTCAAT	alt_5666_new	6	4	5	4	10	10	2	2	15	1
TGCTTCGAAGAGGGAT	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CTGGCATCGGGGTGAG	alt_5666_new	0	0	0	0	0	0	0	0	0	0
AGCACCATTTCGCCCA	alt_5666_new	0	0	0	0	0	0	0	0	0	0
CGTCCCTGACTGTCTT	alt_5666_new	28	37	21	30	43	24	32	28	48	19
ATTCGTGGAAGTTTGT	alt_5666_new	33	50	29	11	47	29	47	15	44	24
GACAAGAGCATGGTCC	alt_5666_new	15	19	12	15	14	15	12	13	14	9
GTTGATGCTCTACGCA	alt_5666_new	12	10	6	10	18	10	10	7	10	9
TGCATGGACCCGCGAA	alt_5666_new	7	15	14	16	14	6	7	8	6	3
TACCAATTGTTGTTTT	alt_5666_new	28	29	27	36	31	21	36	19	25	19
ATTGTTGTATTGTCAT	alt_5666_new	3	6	11	5	6	2	9	7	8	6
TTTACTTTCGGAGATC	alt_5666_new	52	93	76	64	119	57	95	64	113	60
TAAGTGTTTGAGTTCT	alt_5666_new	0	0	0	0	0	0	0	0	0	0
TTAGTCGTGACCTACC	alt_5666_new	30	39	34	21	59	39	70	44	54	27
TAGTGTGCCCTACGTA	alt_5666_new	26	33	27	16	41	19	42	21	58	23
CAGAGTTCATCCAACC	alt_5666_new	32	39	35	32	38	17	38	28	39	26
AGCTACAAGGCAATTG	alt_5666_new	39	71	37	44	44	34	72	39	61	26
TATAGCGTGCTCTTTC	ref_2515_fdr	31	32	23	42	36	13	24	20	29	17
GAACCATACTTTATTT	ref_2515_fdr	40	48	67	43	48	44	53	46	65	43
GTATATGGTAGATTCC	ref_2515_fdr	44	25	39	42	26	34	32	37	39	30
TTTCGGTTGCATGTGG	ref_2515_fdr	82	99	134	103	110	102	109	75	97	87
TTGCGCTGGGAACTGT	ref_2515_fdr	88	81	75	71	67	73	69	49	71	56
CCCCTCTTGTAAAAAT	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CTATATCATACGTCAC	ref_2515_fdr	6	19	14	9	16	6	13	8	10	7
CGTCGGTGCCCGCAGG	ref_2515_fdr	4	7	1	5	5	1	5	4	1	4
TTGGCCGCTTGATAAA	ref_2515_fdr	60	116	95	81	111	62	110	67	133	61
ACCTACTTTCAGACAT	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CTACTACGTCAACTAT	ref_2515_fdr	3	4	4	5	5	2	3	2	6	2
AGTATTGTACGATAAG	ref_2515_fdr	71	64	71	94	59	52	93	50	69	55
CGCTCGACAGAGGTAA	ref_2515_fdr	25	26	23	25	37	13	16	19	46	20
CACTGGTATCCCATTA	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTGACATTCTTG	ref_2515_fdr	0	0	0	1	0	0	0	0	0	0
CTTTCTGACATTCATG	ref_2515_fdr	300	357	343	307	363	296	363	312	388	292
ACACCCAGCCCACCTG	ref_2515_fdr	16	21	23	28	30	22	23	14	32	16
GCATTCCAAGGATCTC	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TGATTGTGTTCCAATA	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
GCTGAGTCCCGTTTAA	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGGTCTGGAAACA	ref_2515_fdr	127	105	116	122	122	83	95	80	131	82
TTCGGAGGAAAGCGTG	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
GAGGAGAGAGTAGGAC	ref_2515_fdr	69	57	80	44	66	57	50	63	54	56
CCAGGTTGGAGAACTT	ref_2515_fdr	5	5	8	5	6	2	9	7	5	3
GTGCACTACCTTGCCA	ref_2515_fdr	11	15	20	15	16	18	20	8	10	15
ACTCTGATGCCTCATC	ref_2515_fdr	39	64	47	50	49	43	40	47	47	40
ACGATCTTGTGGTATA	ref_2515_fdr	82	74	111	87	110	81	110	97	138	87
GATGTCTGAAAAATCC	ref_2515_fdr	9	12	16	9	10	15	18	8	15	16
ATCCAGCTAGATGTAT	ref_2515_fdr	67	59	81	64	57	51	69	72	65	44
TTCAACCTTTTTTGTT	ref_2515_fdr	4	2	6	3	5	5	3	3	3	7
TGTTCAAGCCAACAAT	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TCCTACTTGGTACGCG	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTCGATGTCGGGC	ref_2515_fdr	108	119	134	114	116	101	87	111	122	108
TCCACTTGACGCTCCG	ref_2515_fdr	24	28	25	10	30	17	23	19	29	19
CTTAATTTTCGCTTAT	ref_2515_fdr	14	23	18	26	12	15	14	13	21	7
GGATAAGTTCTCTGGA	ref_2515_fdr	65	48	86	87	49	76	97	60	82	63
ACGTAGATCGTGTGCG	ref_2515_fdr	0	1	2	0	1	1	0	0	0	2
TTTCTTGATAGTTTGT	ref_2515_fdr	8	13	22	26	14	14	19	12	14	15
TATGTAATCCGCGGAC	ref_2515_fdr	8	11	6	8	7	1	7	5	6	6
GGGAGCTATTATTTAG	ref_2515_fdr	54	55	57	45	51	57	55	60	62	50
GCCAGTAAATTTTTAC	ref_2515_fdr	10	5	14	7	6	15	9	6	6	5
GTCCTGAGCCGTTGAT	ref_2515_fdr	23	25	36	32	24	24	22	18	35	29
TTAGCTGTACCAAGGC	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCACCTATGCTAC	ref_2515_fdr	40	39	32	38	44	32	55	34	35	27
TTTGTATATTCAAAGG	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGTATGAGTCTAC	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGATCAGAGCCTC	ref_2515_fdr	10	17	25	20	14	10	17	13	13	15
TTTGGTCCTCAGGCTT	ref_2515_fdr	9	14	15	10	15	2	8	13	16	6
GCTAGCTGGTTATACC	ref_2515_fdr	18	25	23	27	24	22	22	22	15	22
ATGTATAGCTTTATCT	ref_2515_fdr	55	66	81	64	49	59	57	51	64	43
GATGCCCGGTCTCTAC	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TGTAAATCACGTTCGA	ref_2515_fdr	19	24	24	24	25	24	19	25	17	14
TTATAGGGAAGGTAGT	ref_2515_fdr	274	259	334	313	278	276	283	262	275	224
GGCCCTGGAGAGCATC	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTCTAAGCATTCT	ref_2515_fdr	14	14	13	17	16	11	8	9	17	12
TTGACGCATTGCAGCA	ref_2515_fdr	91	105	113	87	90	80	97	78	102	76
ATGACTGGTCTCTTCC	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CCGCACGATCATTATA	ref_2515_fdr	49	57	56	46	37	62	48	45	49	49
TATGACAGCAGGTGTA	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TTACGCTCGGAACACT	ref_2515_fdr	39	42	66	71	59	53	66	54	53	54
TGGCATGTTAGTATGT	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
AACACCCAGGACCGTT	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TATTCTTAGAGCCTTT	ref_2515_fdr	7	4	5	5	9	3	5	4	6	7
CCATGATACCGTGTTC	ref_2515_fdr	65	74	69	54	68	65	60	62	80	68
CACCTTAGCGAGGATT	ref_2515_fdr	33	43	30	43	40	32	39	30	38	41
GTTGATCGCGCCGCAT	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
ACAACTATTCTCCGGT	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTTTTCCGCAAAG	ref_2515_fdr	11	19	17	9	17	12	15	12	22	14
CATGCCCATCCCGAGT	ref_2515_fdr	8	2	5	4	5	6	2	7	9	1
GTGTACTGTTTACAAC	ref_2515_fdr	14	12	16	15	17	9	20	13	22	15
TTATTTACATCTTACT	ref_2515_fdr	5	3	10	12	6	11	9	9	6	4
ATCCTGTGTGTGGGTA	ref_2515_fdr	31	34	33	26	43	34	36	41	19	26
GTGATCACCCATCCTG	ref_2515_fdr	16	10	12	18	14	9	11	12	14	10
TGTGTATTTGAACTTA	ref_2515_fdr	12	15	15	11	22	18	15	17	24	12
TGGTTACCGTACTTGT	ref_2515_fdr	25	15	20	15	24	13	19	15	29	14
CCACGGTAAGATTCTA	ref_2515_fdr	32	31	49	38	37	34	41	35	37	36
CCTTTTGTAAATTGTG	ref_2515_fdr	3	1	0	2	7	5	3	8	2	6
TCGTCGGATATTAAAA	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CTACGTAGCTTCTACG	ref_2515_fdr	42	32	33	29	31	38	23	37	54	45
GTGGCTATTCTTCAAC	ref_2515_fdr	27	34	52	46	44	28	39	32	40	38
CCGCACAAGATTCATT	ref_2515_fdr	32	34	51	45	43	42	35	43	45	37
GCTTAAGGTAAAGCTG	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGCCCTTGTCTGG	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
GAACCCCGAATTCGCT	ref_2515_fdr	35	46	50	41	22	38	35	25	43	33
GGCCGACCGTGTGTGG	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGTTCTTGATATC	ref_2515_fdr	13	10	11	7	10	7	10	8	11	7
ATCTATTGCGATGTGT	ref_2515_fdr	25	20	23	18	20	19	29	15	22	22
CGGGGATTTCTGGCCG	ref_2515_fdr	50	43	57	54	39	41	45	34	43	39
ATCCGGGCATTTTTTA	ref_2515_fdr	35	37	46	44	41	35	45	26	55	30
TAGGGCATTTCGCGGG	ref_2515_fdr	220	191	229	208	176	198	196	186	183	169
CGGCTTTATTAGTTTG	ref_2515_fdr	19	21	24	20	22	25	21	24	19	21
TGGGTTCACTGCTGGC	ref_2515_fdr	21	41	35	30	31	33	33	43	33	35
ATCTAATAGTCTTGGG	ref_2515_fdr	26	51	42	41	32	32	38	27	57	38
GCTTGTAGTTTCCGAT	ref_2515_fdr	19	19	17	14	14	14	10	11	14	15
GGTTTTCAACACATAA	ref_2515_fdr	63	63	92	69	65	67	61	65	67	83
AATTGTGGAGTTTTTA	ref_2515_fdr	26	19	28	17	20	21	19	19	10	20
TATTATCCTGCCACCG	ref_2515_fdr	13	13	24	12	13	10	14	6	14	14
CTGGCCCATCTTCATA	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
CGGAGTGGTTAAACCG	ref_2515_fdr	0	0	0	0	0	0	0	0	0	0
TTATGCTACGTCACTC	alt_5798_new	5	4	3	4	4	4	2	5	3	4
TGCCAGGTCAACGAAC	alt_5798_new	4	4	0	4	2	4	1	1	4	2
TCGTGTTAGCTTTCAT	alt_5798_new	81	37	74	68	43	52	42	75	44	48
AGATCTGGCTGCATAG	alt_5798_new	68	43	75	68	57	60	47	75	57	63
CCTTTTCGGAGGGATG	alt_5798_new	0	0	0	0	0	0	0	0	0	0
GGACATGGCCTTCTAG	alt_5798_new	64	33	81	53	38	72	36	56	51	59
TGTTCTTTCTCTATTA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CCTTTCCGTAGTTATA	alt_5798_new	27	21	36	45	23	28	12	19	15	31
CTACGGTAGACTCATC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
GTGACTATTCATGTGT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
ACTACAGATTGTGCAT	alt_5798_new	16	7	27	20	14	14	15	18	10	18
ATAATAGCCTCACAAT	alt_5798_new	111	61	118	96	73	103	58	102	70	97
TTCCCCTGGCCAGCTT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CTGGTCATGCGGAACC	alt_5798_new	22	13	44	25	24	23	26	16	20	27
GGACACAGTGCCTGAA	alt_5798_new	357	162	469	370	194	346	220	320	198	274
GAGGTTTTGGCGAGCC	alt_5798_new	23	19	29	20	10	23	28	27	13	19
TGCACGTTTATCCAAT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TCAGTCGGCACTTGAT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
GTTACAATGTAACTGG	alt_5798_new	50	49	71	62	54	52	42	61	31	61
TATTTGAAATCTGGTT	alt_5798_new	340	173	393	310	179	331	197	294	232	250
TTGCGGCCTGATTTAA	alt_5798_new	151	69	158	161	72	153	79	140	104	148
CAGTCCCTATCTTAGA	alt_5798_new	20	15	29	42	16	30	19	28	24	23
CATTTTCCGAAGGCTG	alt_5798_new	146	72	175	157	98	139	68	141	80	134
CATCTGTCGCGTTTCC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TTTGCGCAAATCCATC	alt_5798_new	63	42	57	43	34	54	30	45	37	50
ACCTCCTGGGCCGGAC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CGGCGATCAAGCGTGT	alt_5798_new	76	35	90	74	34	67	47	61	44	54
GGTATCTCAGTCAACT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
ACCATGGGCTGGTAGA	alt_5798_new	170	141	219	211	148	178	142	168	156	169
GCCCAGGTTTAGGTTG	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CTCGGTTCTTGCGTCA	alt_5798_new	1	0	0	1	0	1	0	0	3	0
TATATTTCTATGCCCC	alt_5798_new	12	5	7	7	4	11	12	5	5	10
TATTGGTTGTTATCGG	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CTGAAATATTACCTGG	alt_5798_new	0	0	0	0	0	0	0	0	0	0
GAGTTGGACCCGTCGT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
GCACTCCAACCTTTGC	alt_5798_new	2	17	2	0	21	4	18	5	23	4
TCTTGCCGTCGTACTT	alt_5798_new	12	15	18	12	9	15	11	8	10	12
GAATTATAGTAAAGTA	alt_5798_new	201	119	216	198	115	176	135	149	122	131
TAGCTCACTGCCTTAG	alt_5798_new	60	51	75	66	36	52	39	63	41	47
TGTTAACACCTTGCTT	alt_5798_new	21	11	30	32	23	15	7	26	15	20
CAGCCGCTAACGTGCA	alt_5798_new	19	15	25	27	28	28	21	20	26	28
CACAAGGGAAGGGATA	alt_5798_new	73	35	99	66	36	80	30	63	47	47
CATACATCAGAATGTG	alt_5798_new	261	135	324	253	159	216	154	238	139	206
CACCTAGATTAGACCC	alt_5798_new	127	104	163	122	84	114	82	125	102	103
GTAGAACTTCTATTCA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
AAGGTTGGGAGGTCTA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TACGAGCAACAGGTTC	alt_5798_new	98	68	114	111	68	89	71	96	61	93
GCCGCGCCCGTTCGTT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
ACCATCAGTCCGAGGT	alt_5798_new	83	39	112	82	66	82	48	82	66	57
AACACAACGTATGTTG	alt_5798_new	100	51	98	94	44	82	76	84	54	81
GAGTCAAAAGTTTTAT	alt_5798_new	123	95	155	123	74	106	66	100	99	103
GTGGGCCTTTTTGCAG	alt_5798_new	355	207	421	370	231	347	232	334	222	296
TACTTGGAGAAGTCCT	alt_5798_new	410	223	418	395	203	355	192	369	225	324
AAGATGTGGGGCGGTG	alt_5798_new	82	46	100	95	39	92	48	75	59	70
TCGGCGACTCGTCTGG	alt_5798_new	66	28	56	45	28	48	37	48	31	40
TGTGAACCGCCTTCTA	alt_5798_new	306	160	335	275	175	292	155	233	182	264
GTGACTTCTTGCTACC	alt_5798_new	18	18	22	24	15	22	15	31	14	17
CTTAATACTTTGTACA	alt_5798_new	99	118	140	110	119	107	149	110	143	120
ATTCTTATAGGCTTTG	alt_5798_new	13	9	16	18	12	20	6	12	10	11
CCTGGATAATGTATCA	alt_5798_new	1	3	6	4	1	6	2	1	1	1
TTTAGTTGGGCTCCAG	alt_5798_new	36	15	26	44	18	29	17	34	19	23
CCTCGGACCCCGTTGG	alt_5798_new	65	42	86	102	37	68	40	60	54	59
CCCTTTTCTAGGTTTT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CCTCCAGCAACGTGAT	alt_5798_new	21	8	31	21	12	19	7	26	9	16
GCTTTGGAGAGAGGCC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TCGCGCCAAAGACACA	alt_5798_new	31	11	32	40	9	29	10	33	15	30
CGTTTGACCCATCAGA	alt_5798_new	23	13	30	20	15	23	16	18	15	24
CTAAGACGGGGCCTTA	alt_5798_new	70	282	94	83	315	86	313	80	325	63
TCATTGGACTGCGTTA	alt_5798_new	44	30	42	49	25	45	28	37	29	47
TTGCTGGAGGCACAAA	alt_5798_new	1	1	4	3	2	2	1	0	0	4
GGCTTAGCAATGTTCG	alt_5798_new	30	13	35	31	13	31	21	32	23	24
CTCATATATGTATTCG	alt_5798_new	100	78	143	88	80	101	77	89	84	96
ATTCGATTGACCACTG	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CTTTTGCGTACTCCAA	alt_5798_new	23	10	17	25	17	12	13	23	19	17
TAAGTATTACTTTTGA	alt_5798_new	15	9	15	15	8	15	9	10	11	14
GTTCTGTTATAGAGCT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CTGCCAGACCGCACAC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
GTAGGCTATTTTTGCC	alt_5798_new	23	21	36	25	19	25	9	20	18	22
TATGTCAGGTATTCAT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
AGTTTTCGCCATTTGG	alt_5798_new	36	20	54	57	26	41	13	22	23	27
GGCCTTTGAGAGCATC	alt_5798_new	33	21	28	37	20	22	13	30	28	37
CCAACCCTTTACTGTT	alt_5798_new	3	12	2	5	15	0	12	2	27	2
CGGGCCGCTACGTCCG	alt_5798_new	13	15	33	9	14	14	8	19	12	13
ACTTTTCTCCTATCCT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
AGTCCACCCTTGCAGC	alt_5798_new	194	97	242	229	121	213	145	188	143	164
TGCGTTTCAGACTAAC	alt_5798_new	4	2	3	2	1	0	0	1	0	5
GTAGCTAAATCCCCCG	alt_5798_new	37	30	37	35	31	32	24	31	25	30
GTCAGTTCAGGTTCTA	alt_5798_new	206	188	294	195	210	208	199	222	241	168
ACACTTATCCTATCCA	alt_5798_new	17	7	5	17	18	20	14	9	19	13
AACGCTACGTCCCCCG	alt_5798_new	31	21	36	39	31	31	31	37	33	21
TCACTTCGCGTAACAG	alt_5798_new	82	54	109	73	63	101	54	63	43	70
TCGGTTATTGGATTGA	alt_5798_new	69	33	62	42	43	48	44	54	47	54
TTGAGTATTTTCTTTT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CTTAATGATGTTGCGC	alt_5798_new	65	31	94	62	31	72	45	58	47	58
GCTTCTTCCGGTTTGT	alt_5798_new	93	66	123	100	68	96	71	95	74	84
TTCTCGTTACTATCTA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CGGGTACACAACCTTC	alt_5798_new	22	28	32	22	16	22	21	26	20	22
TATTGGCTGCTCGTTG	alt_5798_new	84	42	96	70	45	63	54	70	35	64
CGGGTGGTGTCGGGGA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CGAGGCTCCTATAAAA	alt_5798_new	164	90	145	164	91	174	71	123	98	128
CATCAGACTCCATTGA	alt_5798_new	28	26	27	25	17	28	11	18	19	25
GGAATGTAGCTTTTAG	alt_5798_new	58	42	70	53	32	57	28	51	43	56
CCACCTCTGTCTAGCG	alt_5798_new	19	118	17	16	111	15	110	18	95	13
GATCTGGAGTTGGGGA	alt_5798_new	102	58	119	92	61	89	58	76	61	79
TGTCACAAGTAAGACG	alt_5798_new	95	43	120	89	49	110	77	95	77	94
TCCATAAACAGGGAAA	alt_5798_new	25	9	20	19	10	11	5	12	17	13
CTGTGGGATTTGACTC	alt_5798_new	78	65	97	79	50	78	49	57	41	81
AGCCTTCGTGAGCGGG	alt_5798_new	0	0	0	0	0	0	0	0	0	0
GGACGTTGTAAGCTCC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TGATGGATACCGTTGA	alt_5798_new	79	54	114	86	42	69	51	74	52	64
TCAAATCTGATGGACG	alt_5798_new	95	59	116	114	55	101	58	119	63	93
TAATGCTTTTCCCGAA	alt_5798_new	22	20	33	28	10	24	19	27	21	35
CAGACCAAGTTCACGG	alt_5798_new	43	22	45	33	24	38	31	32	38	30
TCGGTCCACCTAGGTA	alt_5798_new	10	7	17	11	10	3	4	8	0	7
GAGGTGCAGTCGTGGG	alt_5798_new	48	27	53	46	28	39	36	45	29	29
CATTTGAATGGTGATA	alt_5798_new	130	79	162	138	82	132	67	106	70	118
GATTGCGCTGCTAGAC	alt_5798_new	41	34	45	22	30	24	29	19	51	28
TAACCGTAAGCGGTCA	alt_5798_new	20	18	28	26	9	20	11	16	18	19
TTAGGGCACTACCAAC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TTCCTTTTTCTACGGC	alt_5798_new	58	36	68	73	24	46	47	57	41	51
TGTAGGCCCGGCATAA	alt_5798_new	68	43	96	80	45	69	26	51	39	52
TCATGGGCACTTATAA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TAGCCGTTCTAGAACA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
AAGCCATCTTCACGTA	alt_5798_new	119	80	155	144	90	135	81	115	92	122
TCATCGATTCGTATTT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
AATTGGAACTTTGACC	alt_5798_new	10	7	6	14	11	17	10	6	8	14
CGGTAGGGGTCGGACC	alt_5798_new	123	104	132	160	89	130	91	111	74	111
CTAGCACTAAACTCTC	alt_5798_new	1	11	3	0	9	2	13	2	15	3
GACGGCCCACCGCGGA	alt_5798_new	348	139	366	299	161	285	162	286	147	250
ATTCTGATCCCTCAGA	alt_5798_new	58	22	52	45	23	27	19	28	33	38
GTAAACATTTAGCTTG	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CAAAATTGCAATCCTC	alt_5798_new	343	180	412	391	213	339	209	328	212	336
GTTTTACGCGCGGGTT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TCTACTACATGATCTT	alt_5798_new	0	0	0	0	0	0	0	0	0	0
TTAATTAGCCCGTCGC	alt_5798_new	178	94	202	210	94	165	92	153	98	165
GTCAACGGATTTGTGA	alt_5798_new	0	0	0	0	0	0	0	0	0	0
CACTGATGGGTAATTG	alt_5798_new	181	170	226	240	133	176	141	156	155	176
ATTTTTGCGTAGCTAG	alt_5798_new	39	21	54	56	20	36	35	19	33	41
CGCATGTGATTACATG	alt_5798_new	17	21	27	23	25	21	10	16	16	13
CCCGCAGGCCGCCTAT	alt_5798_new	53	48	68	70	42	41	50	58	58	55
TGCAGAAAGTAAGCAC	alt_5798_new	85	83	128	106	65	91	69	90	81	84
GAAAGTTTTTCTCCGG	alt_5798_new	378	251	412	397	241	395	260	351	269	342
ATTTCCAATACCATAC	alt_5798_new	43	28	56	40	33	38	27	44	32	35
CACCCTTTCACTTGTA	alt_5798_new	25	21	39	47	12	25	17	21	28	21
TATCTAACGTTTCGTA	alt_5798_new	46	23	38	45	26	35	21	44	21	28
CGATCGTGTGTTCATA	alt_5798_new	17	20	18	17	13	17	15	17	25	14
ACTGTCTGTCTTTATA	alt_5798_new	9	13	17	11	8	16	7	12	13	10
AAGAATTTATGTAAGC	alt_5798_new	64	43	90	63	35	63	38	53	49	53
ACACTATGTAGGCCTC	alt_5798_new	0	0	0	0	0	0	0	0	0	0
ATAGGATGGGGGATCA	alt_5798_new	37	23	56	43	16	39	24	45	22	35
TGTGTTTGCCACCGAT	alt_5798_new	113	82	109	117	78	106	85	92	103	100
AAGCACCCAGCATCTG	alt_5798_new	474	281	588	481	281	494	294	424	287	429
TACCATTCCAATTACC	alt_5798_new	97	63	105	100	70	97	84	91	102	90
CGATCTCGCAACCCTA	alt_5798_new	34	26	57	38	14	26	25	36	32	39
TTCGTTGATCCTACCC	alt_5798_new	137	60	148	157	73	111	69	105	67	87
GTGATCCGTTTGCCGT	alt_5798_new	229	183	296	259	178	238	157	238	187	199
ATCAGTCTCCCGGGTA	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
TGCAATTATTTCAAGT	ref_5322_RC	3	3	2	7	6	0	5	2	4	3
AGCGACAACTGAGTAT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
GTCTGGGGTCGCATGG	ref_5322_RC	12	14	16	16	15	13	21	13	33	16
AATGGATTGCATGTTA	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
AATACAACTCTCTAGA	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
GCTCTAAAAAACCAGA	ref_5322_RC	11	41	35	21	25	18	32	15	47	24
AGTAAGGACTCTAGTA	ref_5322_RC	31	65	44	25	36	31	62	34	82	29
AACTGCGCTCTACCTG	ref_5322_RC	55	94	83	57	116	45	109	68	102	61
TCTCATCTATCTCTGT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
TGTTACCCTAGGCTGG	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
GAGTCAGCGTAGCCAT	ref_5322_RC	41	68	53	46	76	43	63	37	68	47
CCATGTTCTTTCGAGT	ref_5322_RC	10	22	14	8	29	6	20	6	20	10
CTCTATTTTGAATGTC	ref_5322_RC	1	3	2	1	3	3	5	1	7	1
TACTGGTACTAGATCA	ref_5322_RC	4	6	5	2	4	3	3	1	7	5
GGATGCTGTGAAGAAT	ref_5322_RC	14	24	12	13	23	12	30	14	25	8
TGTGTAATTTGATCGT	ref_5322_RC	33	68	50	46	61	50	85	35	103	48
CGCTTTCTCACGAAAT	ref_5322_RC	76	84	87	54	93	59	85	55	75	63
GCCTAGAGTTTCTTTG	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
TACGGCAAACGTCTAC	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
GCTCTTACGGCCGCGT	ref_5322_RC	75	142	82	74	129	81	165	56	163	70
GTGCTGGTCTCTTTCT	ref_5322_RC	142	175	136	128	182	131	210	135	177	112
GCCTTACTAATTCTTA	ref_5322_RC	4	15	5	11	12	0	14	7	16	1
CCTCTATTGATAAACC	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
TTAGGATGATCTGTCA	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
TTACTCACTGCTATAC	ref_5322_RC	8	22	19	13	23	14	25	7	23	9
GGACTTTGATGAAGTT	ref_5322_RC	163	218	183	165	216	149	242	96	232	118
AGTATGATAAGTGTTT	ref_5322_RC	8	21	15	10	26	9	18	7	25	10
AACATTCGCCTAGCAA	ref_5322_RC	7	11	6	3	11	6	8	8	10	2
GTCCCTTAACTCAGGG	ref_5322_RC	44	62	53	43	84	50	65	47	79	34
GTGTGTTCGCTATCCG	ref_5322_RC	6	22	7	9	17	11	20	15	27	7
GAGTCTGGTGAGGCTT	ref_5322_RC	15	31	26	15	27	14	36	15	18	17
CACATTAACGAGCGAC	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CCTCCGACCTTGATGA	ref_5322_RC	10	14	14	10	28	9	13	5	16	4
GCTTTATTGGTTGTCG	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CTGCCTGGCTTCTTTC	ref_5322_RC	32	79	42	29	63	52	61	28	63	23
GTTAAAAGCTATGCGG	ref_5322_RC	33	70	38	41	63	42	71	26	57	36
CCTCGAAATTTAGCAG	ref_5322_RC	4	18	8	9	13	7	19	4	30	8
ACGGGGCCCTGGCGTT	ref_5322_RC	72	111	89	73	106	65	106	75	112	80
CTTTAATCCTTAATTT	ref_5322_RC	247	318	235	194	314	233	298	201	335	180
GTGTCGATTATCACCT	ref_5322_RC	13	12	7	7	2	4	10	4	8	3
CTATACGACTTTGGGC	ref_5322_RC	0	1	0	2	1	0	0	0	2	0
ACGTGCATTCTACTTA	ref_5322_RC	0	1	0	2	0	0	1	0	2	0
GGGTTGACCGTCTCTT	ref_5322_RC	45	65	42	25	71	39	77	50	79	44
GGGATGCCTCCAGGTG	ref_5322_RC	42	59	32	23	38	17	62	32	62	28
AACGCCTGCAAAATAG	ref_5322_RC	11	24	13	10	31	16	33	9	24	14
CCCTATTGTCCCTGCT	ref_5322_RC	3	3	3	3	3	0	5	0	5	3
GCTGTTTCTGGCAACT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
TACTGTTCACGCATGC	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CGGAGTATGATGACTT	ref_5322_RC	31	72	58	47	65	45	77	59	70	30
TTTACAGTCCTTATGG	ref_5322_RC	7	7	5	7	10	9	7	6	10	2
CATAGGATCATTGCCC	ref_5322_RC	7	17	11	9	9	10	10	6	15	8
CGTTTAATGTAGGTAC	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTAGTTACTCCT	ref_5322_RC	9	7	4	2	4	2	12	2	4	4
CGTTATTGGTGAATAT	ref_5322_RC	39	52	45	38	65	39	70	31	75	37
TGATCTGCTCAAAGAT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
AATTGTCTGCACCTGC	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
GGTAAGGATCCGACTA	ref_5322_RC	11	7	6	8	14	8	12	4	13	1
TGCCTACTGCTGTCAC	ref_5322_RC	4	9	5	3	10	0	6	3	4	5
TACAGGCTCTCGTATT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CAAACTTGTTGCCCTG	ref_5322_RC	12	6	11	10	15	5	16	9	15	9
CAAATTATGTTCGCGG	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
TGGAGATTTTTTTCGT	ref_5322_RC	42	70	54	37	60	46	75	31	63	37
TGCTATCATCTCCCAT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
GTAGGATTCTTTGTTT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CCCTATACATACGTTG	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
AGTAACCTCACGTTCG	ref_5322_RC	64	94	78	46	97	61	99	52	103	51
TAATCACCAGGCGTAC	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CTATGTGGGAGTCTTG	ref_5322_RC	7	12	10	5	12	4	8	8	20	4
TATGATTTTCCGGCTG	ref_5322_RC	11	12	9	6	14	15	24	13	21	9
GAAATATCCACTGGCT	ref_5322_RC	18	34	31	22	32	26	32	21	35	20
GCTTGTAGAATTGGGT	ref_5322_RC	2	0	5	3	1	2	9	2	6	2
CTTTCGCGCTGTGAAT	ref_5322_RC	20	41	17	18	19	26	31	17	41	16
TTATCTTTTGTGTATA	ref_5322_RC	1	1	1	2	4	0	5	1	4	3
AGGTCTATTGCGGCGT	ref_5322_RC	17	26	19	12	33	18	29	17	30	18
CTGGTCACTAGCCAGT	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CATGTTGCTTCTAGCA	ref_5322_RC	0	0	0	0	0	0	0	0	0	0
CTGATGTGTCCTCACA	ref_5322_RC	19	26	16	19	36	20	28	22	29	9
TTTTATCTCTTGCAAC	ref_5322_RC	25	47	38	26	54	39	52	30	51	21
TCTCTTACTGTGCATG	ref_5322_RC	18	23	12	20	34	14	28	12	52	13
TTGCTGTTAGAAATGG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTGGAACGGGTTTTAT	alt_5221_fdr	13	20	16	20	16	10	23	9	21	7
TCAACACATTCGAGCA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTAAGATGTCGG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTGGCGATTTGTC	alt_5221_fdr	8	8	1	5	10	3	8	8	6	7
CTGGGCGTGCCATCAT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GCATTAGTTCTTTGTA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TACTTGTTACTCGGCG	alt_5221_fdr	22	26	29	20	31	18	47	17	44	17
CGTGATTGTAACTCTC	alt_5221_fdr	42	49	42	33	51	44	47	36	53	29
ATTTACGCTTGTTATA	alt_5221_fdr	21	52	44	26	54	38	58	26	65	30
CCTGGGGTTAAAGTTT	alt_5221_fdr	3	6	8	10	11	5	10	12	4	9
CTCCTAGCGGTTCCGT	alt_5221_fdr	28	48	33	33	53	27	40	33	39	25
TAGCTGCTCCGAGGCC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTTGATGGGCGCTTTG	alt_5221_fdr	36	52	71	52	49	46	64	29	55	32
GATTATTGTTTTATGC	alt_5221_fdr	7	5	4	8	9	5	4	9	5	7
TTAGGGGATCTGGGCT	alt_5221_fdr	2	7	11	7	10	11	6	12	12	5
TATGATCAGTCGCAGC	alt_5221_fdr	12	7	12	8	9	7	12	6	9	3
CCCCGCCACTGCATTG	alt_5221_fdr	13	34	32	22	21	11	29	14	21	22
GTCCGGACCGCCAGGC	alt_5221_fdr	33	53	36	53	59	34	53	36	61	27
TTCGTGGATACGTGAT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GGACCTTAGATTAATG	alt_5221_fdr	27	34	31	21	26	31	33	20	37	20
GACCTTTAAGTCCTGC	alt_5221_fdr	20	31	20	23	26	16	32	16	23	15
CGTACGTGAGCTCCGT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTCCCTATTAGAT	alt_5221_fdr	3	15	10	10	11	7	9	1	10	12
TAATGTCCCCCTTCTG	alt_5221_fdr	30	30	42	28	30	27	34	32	40	32
GGATTCGGGACCATTA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GATCGGGTATTAGTAC	alt_5221_fdr	1	3	5	2	9	8	4	3	5	5
GCCCCCCGGTCTCTGC	alt_5221_fdr	56	85	59	59	95	25	90	43	92	46
TGTGGTACCAGATCCG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCGGGCCCACTTC	alt_5221_fdr	12	50	31	18	71	28	46	22	53	14
CCTGGAGCTGGGGTTT	alt_5221_fdr	18	11	16	19	23	13	22	11	23	8
TCTTCTACAGTCATGT	alt_5221_fdr	40	50	41	50	53	47	55	36	54	38
CTTCGGCCCTTTCGAT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TGCATCGAATGGCCTA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GAACACCGTTGCCCTG	alt_5221_fdr	36	44	46	31	49	54	57	40	62	34
TGTCAGGGACGCCGGG	alt_5221_fdr	8	9	5	9	10	14	11	3	9	7
CTGGAGGCCCTGAGTT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTAGTCTCTGTAT	alt_5221_fdr	23	72	23	25	66	22	66	25	64	17
TTCATTGGGTTCAGTG	alt_5221_fdr	12	14	12	13	28	15	20	15	27	17
GCACGGTGCTTCGCCC	alt_5221_fdr	15	11	24	24	29	6	25	21	16	28
CGTTTTCTGAGTGTAA	alt_5221_fdr	0	0	0	0	0	0	0	0	1	0
AGAGACGCCAGGAAGC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GAGCACTTGAAACCGT	alt_5221_fdr	3	5	2	1	3	0	4	3	1	1
AGGCACTGTGTATGAA	alt_5221_fdr	0	1	0	0	0	2	0	3	4	0
TGGGAATTTCTCTTAA	alt_5221_fdr	3	7	2	4	6	5	10	2	4	3
GATGGATGCACTAGAT	alt_5221_fdr	10	14	12	14	18	10	8	11	13	4
TTCCCTCGTCTATTAT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGTGATTTTCCTC	alt_5221_fdr	57	61	63	54	38	42	76	61	53	41
CGCGTGCCTGGTGCAT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGATCGCTTTCGA	alt_5221_fdr	21	19	25	21	28	18	21	11	21	14
TCCTGGGCTTGGGTGC	alt_5221_fdr	18	28	36	9	30	24	30	17	42	18
AGCATCGGACCTTTTG	alt_5221_fdr	24	31	26	31	31	18	30	25	29	24
TAAAAAGACTAATACT	alt_5221_fdr	6	16	19	9	15	8	15	10	12	6
ACCTTGCCTGTTCATC	alt_5221_fdr	10	19	7	6	11	2	7	11	9	8
ATTACTTGGCTTCGAG	alt_5221_fdr	25	31	26	19	36	17	28	19	29	17
GTTTTATCAATACCGG	alt_5221_fdr	6	10	15	15	9	13	21	6	16	8
TCGCATCGGGGCTACA	alt_5221_fdr	72	119	89	94	123	87	112	61	134	63
GTGGTCGTAGTGACCG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GACATATCTGTGCTCT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGTGAGGGCTCTT	alt_5221_fdr	54	51	61	39	64	35	65	42	39	40
AGGTAACAGTATGGTC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTCTCCGTGGCA	alt_5221_fdr	36	50	69	45	43	22	62	40	41	40
GTTTTTCTCTTTAACT	alt_5221_fdr	30	34	40	30	28	30	49	30	22	22
CCGCTAACCCCAAAGC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ATCCAATAAGCTAGAT	alt_5221_fdr	0	0	0	1	0	2	3	0	3	0
ACACAGTGTTCTGTGG	alt_5221_fdr	44	84	48	54	82	59	92	54	89	56
ATGAACTGGACTAATA	alt_5221_fdr	17	21	23	21	21	18	26	14	23	17
GAACCCTGTATTCAAT	alt_5221_fdr	49	30	38	25	34	12	47	22	27	31
TTTGTTACTACTTTCT	alt_5221_fdr	1	0	7	3	1	6	3	6	4	0
TGTTTTCGTGAACTGT	alt_5221_fdr	6	17	8	7	10	10	12	8	17	8
TCTAGTGCTATTATTC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ATATCACTGTCCACGT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTAGAATTCTACGGTG	alt_5221_fdr	9	7	7	10	12	8	8	9	7	5
GTCATAGGTTCCTCTT	alt_5221_fdr	51	73	73	62	79	59	106	57	70	57
GATTTCTACCCCCAAA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TAATCGATGTGTATGT	alt_5221_fdr	6	6	9	7	8	3	7	7	5	7
TGGTGAAATGCGCACA	alt_5221_fdr	19	52	26	35	46	30	48	24	38	34
CAGAGACGTTAGTATT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TATCAAATTAAGGGAT	alt_5221_fdr	24	37	35	34	35	25	37	23	38	27
ACACCAATCGAGGTGC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GAAGGCCCTTTAACGG	alt_5221_fdr	1	4	1	2	0	0	0	0	2	2
TCGTGCGCCGTTAATG	alt_5221_fdr	1	0	0	1	0	0	1	0	0	0
AAATCTGGTGAAGTTT	alt_5221_fdr	37	56	49	46	51	46	44	35	72	40
CTGCCCGATTGTGTCC	alt_5221_fdr	6	20	9	5	20	2	13	7	11	6
AAGTGTTCTTCCTCGG	alt_5221_fdr	15	24	26	16	25	10	22	12	24	19
CAACAGTCACCCCGTC	alt_5221_fdr	62	108	84	74	142	61	152	61	158	49
GTGGCCATCAATCGAT	alt_5221_fdr	4	4	4	6	2	1	4	5	5	2
AACGTGGCCATCAGGA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
AATAGCGGACGTAATA	alt_5221_fdr	2	15	14	10	5	5	9	12	12	4
GGGTTTCTATTTATCA	alt_5221_fdr	9	7	6	5	6	2	6	7	9	5
ATTTCCTGCTGCGGAC	alt_5221_fdr	12	4	7	9	14	8	14	7	9	9
AGCCGCCGCTCAATTG	alt_5221_fdr	10	12	11	8	11	4	13	18	10	8
GTTAGTTCTTTAGTGG	alt_5221_fdr	8	14	3	10	14	7	9	9	17	6
CATGGTGCGGTAGGAT	alt_5221_fdr	70	101	99	72	92	60	98	67	90	69
CTCCTGTGCATTGCCT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTTGTCGGTCGAA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTCGTTGTTGGAT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTAGTCGCCGCGT	alt_5221_fdr	6	25	21	20	22	4	13	15	15	8
GCGTCAGGGTCGATTG	alt_5221_fdr	76	92	97	83	118	78	94	63	103	80
TGACGGAGGTCAGTAA	alt_5221_fdr	1	3	2	1	4	3	2	0	1	2
TATCATTACTCAAATT	alt_5221_fdr	44	51	58	46	50	38	61	40	58	42
TCCCGGTGACATAGAC	alt_5221_fdr	6	47	11	6	47	5	49	7	65	10
GGCTGAATTATAAGCT	alt_5221_fdr	32	39	26	22	32	31	37	21	58	25
TGCGTACACGGGCGAA	alt_5221_fdr	7	11	5	0	6	4	7	6	9	7
TGTGTTCTGGTCTAAT	alt_5221_fdr	19	33	18	15	33	11	38	26	39	27
TTAGGGGTTACGGGTC	alt_5221_fdr	41	56	51	31	50	39	64	40	48	40
GGACGTTCAGCCGAAA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
CCAGATAACATATATT	alt_5221_fdr	41	53	44	27	43	30	58	37	56	33
GGGATTGTTCCACCTA	alt_5221_fdr	22	22	31	26	26	20	25	12	40	21
GCCTCCGGGCTTTGCC	alt_5221_fdr	1	3	2	2	2	0	2	2	2	0
TAATTGCTCAGTTGGT	alt_5221_fdr	10	9	10	9	21	18	21	10	18	7
GATCCCACAGATTAAA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTGTGCGTTGTA	alt_5221_fdr	30	43	41	36	46	32	41	27	53	22
CTACGAATTTAAAGCT	alt_5221_fdr	10	10	16	10	11	7	8	8	11	2
TTTTACACCGAGTGTT	alt_5221_fdr	30	31	45	23	50	25	47	21	35	36
TGGTGTCCAACGCCGT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGGCTATTTTTAG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTTCAAGTATACC	alt_5221_fdr	5	2	6	2	2	5	6	8	3	4
AGGATTTATCGTTTGC	alt_5221_fdr	94	124	89	99	145	65	134	90	123	105
GCATCCGTCATACCTT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
AGGGAACGGTGACTCA	alt_5221_fdr	152	199	187	160	246	139	205	142	225	138
TACCTAGCACACTTAT	alt_5221_fdr	5	20	3	4	16	5	28	5	24	4
GTTACGATAACTAATG	alt_5221_fdr	21	37	16	16	32	25	38	17	27	17
CCACTGGTGCGCCACT	alt_5221_fdr	6	93	15	10	109	22	97	13	85	12
TGGGCTCAAGTGCTGC	alt_5221_fdr	5	9	14	4	9	8	18	7	15	12
GTAGTAGCGCGGGAAC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTACGCTCGCATTAGC	alt_5221_fdr	19	25	24	14	28	13	23	13	28	23
CGGGAATTCGTTAATA	alt_5221_fdr	51	95	78	59	88	52	84	58	109	48
ACGGCACACGTTCATT	alt_5221_fdr	7	13	6	3	9	2	4	5	6	4
TTCATTAGGTCTTATT	alt_5221_fdr	79	111	87	64	98	80	98	74	118	61
TTTTAAATGCCACACG	alt_5221_fdr	11	11	10	9	28	16	17	10	21	9
TATCGAACGCCAAGCA	alt_5221_fdr	115	137	147	87	157	107	170	78	149	96
TCAGAATGGTTCCGTC	alt_5221_fdr	33	40	59	32	54	22	53	36	44	31
TATTGCGCTATTCCTT	alt_5221_fdr	66	75	64	54	83	54	86	53	93	56
CATACTTGGTGTAGCG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GAAGCTACGCCGGCAC	alt_5221_fdr	22	29	34	29	17	21	29	17	27	26
GACAATCTGGATTTTA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTATGTTCAGCGG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGTCTCGTTCGCT	alt_5221_fdr	8	20	15	5	15	4	11	10	20	11
GCATCTCCTTTAGAGC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCCTCCTCACGGG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCTCGCTTACACT	alt_5221_fdr	12	12	12	8	13	6	18	6	11	3
GGCTGAGTATGTTCCG	alt_5221_fdr	10	8	11	6	11	12	12	5	23	12
ATTACTGTATATCCGG	alt_5221_fdr	27	19	16	15	18	12	21	19	25	14
TATCTTTACTGGCCTG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TATCCCTACGCCTTAC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
CCTGACACTTCCGTAT	alt_5221_fdr	23	25	11	17	28	19	27	18	43	12
CTCTGTGTGACGGCGT	alt_5221_fdr	7	13	7	12	11	7	17	11	27	6
TTAGAAACTGTGGAGG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCATCAAGCACGG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTAAGCACGTGCA	alt_5221_fdr	46	71	49	56	72	58	76	43	80	42
TCTGAGGTTTATTGAA	alt_5221_fdr	5	9	7	4	4	2	4	1	3	3
CAACTTGCTTTTGTGT	alt_5221_fdr	42	45	43	39	50	23	50	32	47	25
CATGTACGCGAGGACA	alt_5221_fdr	34	52	46	43	33	35	36	33	54	25
ATGTGTTCCGTGTTAA	alt_5221_fdr	27	70	47	44	55	37	59	48	60	38
ACTGTACGACTGACTT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TTAATACAATTCATTT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGTTTGGGCCAGA	alt_5221_fdr	39	50	27	23	48	26	63	27	66	34
GCACCACTTCTGGCTT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGCAAAACTCGGT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ACCAATGTCTGTCTAT	alt_5221_fdr	24	17	18	16	10	10	21	13	25	5
GAATCTCAGGGCATAG	alt_5221_fdr	19	22	21	17	24	17	34	17	24	9
ATTGGCCAAAAAATGA	alt_5221_fdr	53	71	84	50	76	55	71	59	87	54
CATTTTGCCACGGATT	alt_5221_fdr	34	51	62	29	44	36	48	27	59	35
CCTTCCGGTACGCATT	alt_5221_fdr	6	20	10	12	11	4	16	9	19	9
TGATCGTGTCATCTCG	alt_5221_fdr	4	7	3	5	3	4	5	5	3	1
TCCAGCCACCAGAAAT	alt_5221_fdr	4	17	7	3	17	3	18	2	12	5
CTTATTTATACCTCGT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ATGTAACTGTCGGATT	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TACATCGGTATCCCCC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGTAGGTGATAGG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
ACCCACATTAGGAGGT	alt_5221_fdr	32	41	33	31	49	28	47	23	52	19
CTTATAAACTCACGAG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
AATCTAGTAGCATGCA	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GCTAACCCCGCTCTTC	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
GTTACTATTATTCGGG	alt_5221_fdr	13	11	19	8	11	4	10	17	15	8
GCTAACAACCGCTTAG	alt_5221_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCCACTCTTCATA	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTAATACCGATCA	ref_5165_reverse	28	23	30	25	36	27	42	27	38	24
TTGATCTTCCCTGGTA	ref_5165_reverse	28	39	42	32	52	33	44	24	36	25
TCCCGGCTTAACACTT	ref_5165_reverse	38	90	75	59	64	43	90	51	110	39
GCCGGAACGTCTGTAC	ref_5165_reverse	6	18	7	1	17	2	20	3	15	2
GGTAAGACGTGCAGTG	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTTACAGAATAT	ref_5165_reverse	59	77	76	41	74	45	52	32	83	41
AGCCCATATTAGAACG	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
ACACAACCTTTGTGTG	ref_5165_reverse	1	6	1	2	0	1	3	4	8	0
AGCCTCTCGGCAATAA	ref_5165_reverse	34	31	42	36	67	42	54	33	47	35
TAGGTTGGTGAAGATA	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
CCAAGCTTTTTACGGC	ref_5165_reverse	15	10	9	8	16	6	13	6	23	11
GACCAAGAAATCTTGA	ref_5165_reverse	23	24	18	12	23	11	23	17	17	12
TTTGAGGTAATTGGGA	ref_5165_reverse	32	45	22	26	38	24	45	34	57	18
GCCGCCGAAAAGTGGT	ref_5165_reverse	2	8	1	2	5	2	11	4	8	3
TTGCGGGCCAACCTTC	ref_5165_reverse	9	14	12	12	11	1	10	11	17	6
ATTAGATTCGAGATCA	ref_5165_reverse	82	120	123	79	123	96	120	96	127	59
TTATGGCTGTAAGGGG	ref_5165_reverse	43	82	63	55	107	60	78	63	107	52
CATCCATTGTCTGCAT	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGGCCTTCCGTCC	ref_5165_reverse	48	79	66	47	57	50	81	40	82	39
ATACCTCTGCTCAGAA	ref_5165_reverse	1	0	1	2	1	1	4	0	1	2
ATCTCATTGGCTTTGT	ref_5165_reverse	8	15	15	17	17	10	15	13	8	3
AAAAATATGAGGTCAC	ref_5165_reverse	29	29	19	15	24	15	22	19	27	16
CCCACTGCCTCAAGTA	ref_5165_reverse	26	51	53	30	39	27	39	40	53	36
CCGTAAAGGGCCCGAC	ref_5165_reverse	34	45	46	32	47	28	51	27	59	32
GAGCTGATGCGTCGTC	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
TCACCTTTGCACCTCC	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
GCGAGTATGGATTTTA	ref_5165_reverse	2	1	3	0	1	3	2	4	2	1
GGGATTTCATTTTTAA	ref_5165_reverse	19	40	45	33	41	34	60	40	48	25
TACCGCCGGATTTTTG	ref_5165_reverse	19	14	16	14	21	14	27	14	27	14
TTGTGAGCACCCTTCT	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
ACCATGGCCGTCTCTG	ref_5165_reverse	18	51	37	21	43	35	44	25	28	28
CCGGGCTAGTCGGTTG	ref_5165_reverse	72	109	90	63	107	72	109	53	143	56
TTTAGTGCCGGTACAG	ref_5165_reverse	60	133	105	74	114	98	136	80	158	63
GTACGTTTTAGCGGTT	ref_5165_reverse	27	33	30	23	33	16	30	17	35	18
TTCTAGTACACAGAGC	ref_5165_reverse	55	121	82	78	146	56	129	64	153	59
GTGTGCCTGCCGGCTC	ref_5165_reverse	9	16	19	8	21	10	13	7	18	14
CCCTGTTTGTCATGCA	ref_5165_reverse	94	126	95	96	125	63	141	72	137	66
CAGTCTCTTATTTCAA	ref_5165_reverse	49	78	69	55	93	48	98	61	70	51
GGTGTCGGTAGACGTA	ref_5165_reverse	1	5	4	4	7	2	6	3	2	3
TGCTGATCCATTCTGA	ref_5165_reverse	28	37	46	27	59	34	41	22	56	13
TAATGTGCAGTAAGAT	ref_5165_reverse	5	10	12	17	12	9	12	14	19	9
CTCGTGGCTGTCAATG	ref_5165_reverse	5	4	7	3	5	4	9	4	5	4
GCAGATGCTGAGTCAA	ref_5165_reverse	41	36	24	28	53	28	47	25	43	16
CTACTGCCAGCCATTT	ref_5165_reverse	15	17	16	15	22	17	22	13	21	9
GTTTTCTAACTGTACA	ref_5165_reverse	28	45	48	42	51	36	58	43	47	41
AGAACGACACGGTTAG	ref_5165_reverse	13	12	17	16	11	11	16	7	20	8
GGTTCGTCCCGATCTG	ref_5165_reverse	6	17	11	8	14	9	24	13	15	6
AATCGAATATGTAGTT	ref_5165_reverse	23	45	44	24	36	27	49	36	41	26
CGGGTATTGGTAACGA	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
GCTAACCACTCTATTG	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTTGCGTGGGCAG	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGATGTCGATCTC	ref_5165_reverse	9	30	25	18	41	24	53	18	62	21
AGGGTGGACTAAACTT	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
GGCATTCCTTGAGCTA	ref_5165_reverse	5	5	4	7	10	7	5	2	8	3
CTCTATTTGACCAAGC	ref_5165_reverse	13	33	22	15	25	17	32	22	42	10
ATGTTATGCTTCTGTT	ref_5165_reverse	7	10	3	7	8	1	2	5	9	3
TTTCTACCCGAACACC	ref_5165_reverse	39	60	42	51	65	47	56	42	61	39
AGATGGGTTCCGAACG	ref_5165_reverse	0	1	0	1	0	1	0	0	3	2
TTAGGATACTCTAGAA	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
CAATCTCCAACATCGG	ref_5165_reverse	43	72	64	47	111	49	79	54	72	48
GAAATCTAGGTAATCA	ref_5165_reverse	0	0	0	0	0	0	0	0	0	0
CTGTATATGTTAGGTG	ref_5165_reverse	22	29	18	25	37	17	33	23	22	19
TAGCTCAGCGATTCGT	alt_5165_reverse	26	36	28	23	34	27	52	16	36	31
TATTAGCGCGAGCTAG	ref_5165_reverse	71	82	64	78	92	47	88	71	92	66
TCCCGTTAGGTCTTAT	ref_5165_reverse	19	37	26	22	51	16	43	21	38	16
GATATGTAACTCATGG	ref_5165_reverse	40	41	58	39	65	39	46	34	40	25
GACTCTTCTCCTTTTG	ref_5165_reverse	88	124	100	105	103	85	105	77	108	65
TGAGTCTAACAGACTG	ref_5165_reverse	29	35	29	32	36	22	49	33	30	27
GTCAGACTCGTCCTCA	ref_5165_reverse	2	7	8	5	15	5	15	3	9	5
CAAATGCTGTTGGTCA	ref_5165_reverse	28	38	20	38	28	27	39	26	44	24
TGAAGTCGTGTTTTTC	alt_5660_new	33	38	43	45	34	32	28	34	40	23
CTGCATCGCCAGCACT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
AGCGAATCCGACCCGA	alt_5660_new	58	69	54	57	72	62	81	53	75	37
TGTGGACCTATTTTGC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
GTAATAGGTCGGCCTC	alt_5660_new	38	68	60	48	70	39	65	43	63	38
TCTTGCCCCGTGTGTA	alt_5660_new	51	66	49	62	67	62	61	51	68	51
GTAAGATACCACAGCT	alt_5660_new	8	7	13	7	12	12	13	4	9	6
TCTGGATTTTCTCCCC	alt_5660_new	12	19	22	14	26	10	18	9	23	17
TTTTTTCGCCATCACG	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CTGCAGTGGAGTACTG	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TTGGACGATATTTCGA	alt_5660_new	50	64	63	48	68	53	68	63	71	49
ATGCAAAGTTGAGTCC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
ATACCTGCTATCAACC	alt_5660_new	47	55	49	40	46	46	42	26	54	42
ATTCGGCGTAATTGAA	alt_5660_new	4	6	4	3	3	3	5	2	3	4
CATGTAGAAGCAAGGT	alt_5660_new	27	34	32	29	26	23	43	23	44	34
ATTTATTTGATGCTAG	alt_5660_new	74	102	107	79	97	69	110	79	110	63
TTCCAGAACGTGCCTC	ref_5660_new	6	13	8	5	9	4	14	13	18	6
AAGCTGACAAGCGACC	alt_5660_new	11	4	5	11	7	7	7	9	10	10
GCCTTAGTGCTTCGGG	alt_5660_new	21	34	16	17	37	17	36	17	37	15
GGTTAGGTCTTGTCAG	alt_5660_new	0	0	0	0	0	0	0	0	0	0
ATGCTTTTGAGCCAGG	alt_5660_new	39	49	66	48	34	55	53	49	67	48
GAGATAACGGCGCAGC	alt_5660_new	20	30	30	23	26	34	36	21	32	22
TCGTGTTCTCGTGCAG	alt_5660_new	5	10	5	11	10	5	10	14	10	7
TGTCCTCCCCGCCGCT	alt_5660_new	2	13	1	1	11	3	17	2	23	0
CGAATCTCAAGCACAA	alt_5660_new	4	7	15	5	7	11	10	13	8	8
TTTTTTACCGCGCACC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TTTCGGCTTCACGCAC	alt_5660_new	4	16	8	6	16	8	15	6	13	6
TCTAGAGAATCTAAAA	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CAGTCTGCGGTGCCCG	alt_5660_new	37	54	39	38	49	34	76	28	82	33
TATATCGCCGCCCCCA	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TCCACTTTTAGTTCAT	alt_5660_new	7	10	9	13	16	12	15	4	20	12
ACTATGTCATCCGGTG	alt_5660_new	46	46	55	45	38	33	33	35	54	45
CCTTCAAGTTCCGTGC	alt_5660_new	5	15	9	7	15	8	17	13	23	7
CCAGGTGTCCGGGTTA	alt_5660_new	8	61	22	11	79	13	107	14	67	14
CGGCCGGCTGCATTTG	alt_5660_new	20	20	12	21	24	14	19	17	30	16
TCCGCGCCGCCTCCAA	alt_5660_new	15	28	14	16	26	11	29	13	29	19
CCGCTTATTCTTAGGG	alt_5660_new	25	132	56	44	133	30	132	27	154	35
ACTATTATAGATTTTC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
GTTCCGGTACTCCCCG	alt_5660_new	1	28	2	0	22	1	32	3	21	3
GTGCGCTGGCTCGTTT	ref_5660_new	16	9	23	16	18	10	12	11	15	9
ACCCCCTACGTCTATT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
AACGTGATCGGGCCAA	alt_5660_new	50	65	60	54	51	49	61	37	63	42
TGTCTATATGTTACTT	alt_5660_new	39	50	48	44	39	26	39	48	52	41
ATTCACTTCAACTATT	alt_5660_new	14	28	26	19	31	27	34	27	32	18
CGTGGATTCGAGGGGC	alt_5660_new	15	37	29	22	49	17	37	28	28	34
TATAAAATAGAAATTA	alt_5660_new	9	9	9	4	9	13	4	2	18	7
GTAAAATTGCTTCGTC	alt_5660_new	8	16	3	9	4	4	6	6	11	8
TTGTACAGAGCCACTG	alt_5660_new	1	0	0	1	0	1	0	0	0	0
ACTAACCATTTAAGAC	alt_5660_new	23	25	26	19	28	21	29	29	22	16
GTCGGTGTAGCAGCTC	alt_5660_new	11	9	5	7	13	6	10	7	12	5
CCACCGTAGTTTGAAA	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CGGCAATCGCTTTAGT	alt_5660_new	20	23	30	24	29	21	20	21	22	19
ACCACTAGGCTGATTG	alt_5660_new	4	4	4	8	3	3	3	1	2	0
ATAATACGGGACGCGA	alt_5660_new	6	4	9	3	8	3	2	6	3	2
TTCATAAGCGGGCAGC	alt_5660_new	8	24	9	11	11	16	8	11	10	9
CCATCGTACGACTGGT	alt_5660_new	6	7	4	6	7	4	2	8	5	2
TCGAAAAGTTGGGGCA	alt_5660_new	3	2	6	2	2	3	7	4	3	4
GAGTCCACGCTCGCAG	alt_5660_new	0	0	0	0	0	0	0	0	0	0
GCGCGGGAGCAGTTAC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
ATTCGTCACCCACCGC	alt_5660_new	34	34	35	24	31	27	45	33	38	32
TCGTTTTAATATTAGT	alt_5660_new	5	3	0	1	4	1	1	0	3	2
ATCTTTAGTGCTTATC	alt_5660_new	17	25	24	29	24	19	27	17	24	10
GAGGTCTTGCACCGTG	alt_5660_new	66	80	70	60	69	70	76	65	87	63
TATACGCAATGCCCTC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
GCACATATCTGCCCGC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CCCGCGCTGCGTGTAT	alt_5660_new	44	56	52	49	52	48	47	39	54	37
ATCCCTTCTAAGGTTC	ref_5660_new	13	19	21	16	28	22	25	5	24	11
ATTCTCTATGTGATGT	alt_5660_new	133	171	194	164	189	169	192	158	195	138
CGTAAGGAACTGGTGG	alt_5660_new	44	46	60	46	44	39	62	30	57	40
GACAACCGGTATACTA	alt_5660_new	0	0	0	0	0	0	0	0	0	0
ATACGCTAATTTACCC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
GTGTCACTCCGTACGC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
ACTTTGTGCCCACAGT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TTGCCTTAGCGGGATT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TATATCGCCTCCACTG	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CTTAACCAGGCCAAGA	alt_5660_new	26	63	34	27	51	27	64	30	54	33
CGTCAATGATATAGCC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TCTACAATGTATACTC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
GCTAGCTACAAGTCGA	ref_5660_new	40	48	45	42	38	41	60	31	55	26
TTTTGCCCTCTCGCAA	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TGCTCTTGCCGACTCA	alt_5660_new	25	36	42	46	50	33	58	43	60	33
GATTGTTAGAGTAGTA	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TCCAATTCATCTGAAG	alt_5660_new	16	46	20	23	33	20	30	22	36	13
TCCAATGTGGGTTAGC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TCGAAGGGTTTACTCT	alt_5660_new	17	22	37	20	25	21	28	32	27	25
AGTTTCCCGTCGTAGA	alt_5660_new	8	23	14	19	37	12	22	12	33	13
GATCCGGGTTTCATTT	alt_5660_new	73	63	101	78	58	95	79	68	91	59
TAGATTAGTTAGTACT	alt_5660_new	28	64	33	39	52	33	58	36	56	29
CAGAGTTATATCTTAG	alt_5660_new	7	8	16	14	11	12	12	10	19	12
GTATTTAAGTCAGCTT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TGCCAAGCCTACCCGT	alt_5660_new	3	0	0	6	3	2	5	1	3	0
CAGTGGGCGCAATGGT	alt_5660_new	1	2	1	0	2	2	5	0	0	1
ATACGCTAATTTATCC	ref_5660_new	213	242	279	233	233	216	259	207	276	170
ACTCCAACGCAATACA	alt_5660_new	0	0	0	0	0	0	0	0	0	0
GTCTAACTCTGGATTC	alt_5660_new	13	17	17	10	17	22	22	22	19	20
CTGGTAATTAGTTTCG	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CTGGGACAGGCAGGGC	alt_5660_new	22	28	39	34	41	26	37	25	31	24
CACTGCGTACATCTAC	alt_5660_new	12	14	21	13	17	18	17	8	9	10
ACCGTTGTGCTGGCTT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CATCGACGATGCATAA	alt_5660_new	78	70	101	86	91	78	101	74	87	84
TCATGATGCATTTAAC	alt_5660_new	38	56	57	34	64	37	63	38	70	27
TGTTGCAGTATACGTC	alt_5660_new	92	128	130	114	128	113	131	88	157	102
TCCTTAACGCAAGGCG	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TTATGGGCTCACCTAC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
TAGTCTCAAGCCTTCT	alt_5660_new	15	19	16	9	13	15	26	15	18	14
TTTATCGCACACTTCC	alt_5660_new	2	18	4	3	22	2	21	3	19	2
GGCATCTCCCCGTCTT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
AATTTTATTGAGACCG	alt_5660_new	31	55	43	35	36	29	52	19	50	18
TTTCTCTAGAACAGTT	alt_5660_new	0	0	0	0	0	0	0	0	0	0
CCATTTATATTGCTTG	alt_5660_new	6	7	2	4	2	3	7	2	12	2
CAAGGGGTTGGTGCCC	alt_5660_new	20	29	33	13	27	18	28	16	33	28
CATTTCGCGTCGATAT	alt_5660_new	99	140	115	71	106	64	119	72	122	74
GATAACTCTTCGGAGG	alt_5660_new	10	9	10	13	6	17	15	14	18	13
TTTGATAAATCGGGAT	alt_5660_new	23	21	19	21	26	21	27	12	25	14
TCTGCGATGGCTCGGT	alt_5660_new	27	21	29	18	19	11	18	11	16	13
TCCCCCCGCTGCAGAA	alt_5660_new	8	38	17	19	35	19	41	9	44	10
TCGTGTCCTGCAACCC	alt_5660_new	15	25	32	24	24	21	33	19	35	14
CGATTAGTGTAATGTT	alt_5660_new	34	36	35	34	49	49	37	33	50	16
CCACTAAAATACTTAG	alt_5660_new	73	64	63	66	98	44	82	44	92	52
CCCAGAGGATCACAGT	alt_5660_new	6	6	10	6	11	12	8	5	6	7
TGGAGAAATCTGTTCT	alt_5660_new	44	51	46	39	52	54	49	40	55	48
CGTATATGCGAGCTTG	alt_5660_new	19	25	20	19	24	17	23	21	33	15
TTTGCAAACTGTGCCC	alt_5660_new	0	0	0	0	0	0	0	0	0	0
ATGGTCGTCATTACGG	alt_5660_new	3	3	2	1	1	4	2	7	1	0
CTGGAGTGTATCTGGC	alt_5660_new	135	169	176	151	201	150	147	173	157	135
ATTGAAGCGTGGTTGG	ref_6069_new	31	35	13	13	29	21	41	32	47	21
TGATCGACGCTGAACC	ref_6069_new	19	38	17	10	36	10	47	12	24	11
ACAATCAGGTTTACGT	ref_6069_new	98	158	95	114	98	121	112	96	138	85
TTTTCTGATCCCAGAG	ref_6069_new	0	0	0	0	0	0	0	0	0	0
ATGGCTGGATGCTCTG	ref_6069_new	40	48	45	32	50	25	58	31	59	33
ACCCAGAAGTTATCCG	ref_6069_new	6	15	14	18	28	13	25	14	34	11
GCCTACTTAGAGCTCA	ref_6069_new	20	51	24	23	47	29	33	18	50	20
CCCTTCCCTTTTTTAT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CCCACATTGATTCGTA	ref_6069_new	4	1	3	7	5	2	7	0	9	2
TCTTTCGTCATGAATT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
AATCGCTTCAGCTGAT	ref_6069_new	5	5	5	6	7	13	5	3	9	8
AGATAATCTTCATTAA	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CCTCTCATGTTTTCAA	ref_6069_new	104	106	126	101	127	75	111	95	114	76
GCCGATTCCTTATAGT	ref_6069_new	8	10	10	3	7	4	14	10	9	6
GTGCCATCGGTATGAT	ref_6069_new	0	0	1	0	0	0	0	0	1	1
ATCATGCGATCAACCT	ref_6069_new	65	85	80	63	75	56	86	55	96	54
TCAGAAAAGAGGGTGT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
AATCTTGATACACATT	ref_6069_new	48	76	73	60	56	44	73	56	62	59
GCTTATGCTCTTCGCA	ref_6069_new	15	22	23	13	35	14	35	13	24	12
TCTACATGGCCCTTCC	ref_6069_new	5	7	11	1	9	10	4	1	8	6
GGTGATTTCACGTGCA	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CACCGTTAGTGCGTTG	ref_6069_new	25	39	23	20	25	24	44	12	29	19
GGGGGGGTAGAGGCAA	ref_6069_new	10	15	15	7	12	8	19	3	13	7
TTCACATTGTGTGACT	ref_6069_new	24	27	30	30	43	19	35	23	43	15
CGGGGGTTTAGTTAGC	ref_6069_new	18	25	26	17	25	17	38	16	26	14
TTTACTTGGTCGTACG	ref_6069_new	72	82	89	74	97	61	117	59	87	68
TCCTAAGTCAACTAAT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CTCCGATTTCTCCCAC	ref_6069_new	17	26	20	14	25	10	30	17	17	19
ATGCTACGCTATGCCG	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CAGGGGCCTTTTTCGA	ref_6069_new	18	33	13	15	20	31	28	23	25	11
TGCTGGCGTGTGTGCA	ref_6069_new	10	8	7	7	13	8	15	3	10	8
GTCCGGCCCTATCCCA	ref_6069_new	24	24	23	24	32	21	30	15	32	23
TAGTGCAGGAGTGTTA	ref_6069_new	62	67	67	62	114	61	99	54	98	52
TATGGATATCCAAGCC	ref_6069_new	6	11	5	1	3	6	6	3	1	3
GGACGGCAGACAATTC	ref_6069_new	30	43	44	41	55	43	52	26	40	23
ACACTAAAGACATATG	ref_6069_new	11	15	13	9	26	11	20	19	18	15
ACTTAAGGACTGACCG	ref_6069_new	40	83	64	48	91	46	90	51	71	29
GGTCCCAATCTGTCTC	ref_6069_new	15	25	15	13	15	18	24	16	18	13
GATGAACATCAACTTG	ref_6069_new	0	0	0	0	0	0	0	0	0	0
ATTCTGCTGGGCTACT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CACGCTCAATCCGGAA	ref_6069_new	24	16	21	13	20	21	32	14	40	16
TTACTCTGAATAAGAC	ref_6069_new	14	23	19	21	28	14	21	15	23	17
TACGCAGCACGGGGCG	ref_6069_new	35	43	34	21	26	24	37	17	36	19
AGGTTCTAGAACAGTT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
TTCTTAGGACTTCCCT	ref_6069_new	16	29	25	21	36	16	24	24	27	20
ACCCTGTTCATTTTGA	ref_6069_new	7	10	15	4	7	2	11	4	12	10
ATATTAAGTAGTCAGC	ref_6069_new	63	92	76	53	80	82	77	56	94	67
CTCATCTCGAAGTAGC	ref_6069_new	6	11	1	6	15	1	9	8	11	5
CTCGTCGATTGTAGCC	ref_6069_new	39	34	33	18	37	20	44	22	40	29
GTATCTGGAACGAGAA	ref_6069_new	9	30	13	15	27	14	25	12	27	11
CTAGGGAAATGATATG	ref_6069_new	11	10	7	11	12	5	12	3	14	6
GAGGCTGTTCCGAGAG	ref_6069_new	0	0	0	0	0	0	0	0	0	0
ACACTATGTCAAAGCA	ref_6069_new	70	99	78	63	124	79	99	63	118	78
ACGACGTCCTGGTTCT	ref_6069_new	9	15	9	11	16	7	7	6	22	7
CCATGTTAAACGATTC	ref_6069_new	122	182	171	132	197	135	188	124	201	125
GAAGCGGTCACAAAAC	ref_6069_new	18	27	18	21	20	17	22	18	29	15
TAGAGCAGGAGTGTTA	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CGTAAGACACCTCTTC	ref_6069_new	0	0	0	0	0	0	0	0	0	0
GTAAGGGTAGAGCATG	ref_6069_new	17	32	32	13	29	7	15	14	33	15
GTGTCTTCACGCACAC	ref_6069_new	9	16	11	11	4	8	15	12	14	12
AGGACAAACGGTTAAA	ref_6069_new	13	22	13	13	8	13	18	13	9	15
GCAATCTATAAGTTAT	ref_6069_new	17	21	24	21	25	22	27	10	17	20
AAATCCGTCGGACTAT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
ACAAGACAGCTACCAG	ref_6069_new	11	15	17	13	27	12	22	20	27	12
TTTCACTGTGTCTTAG	ref_6069_new	0	0	0	0	0	0	0	0	0	0
ATTCTAGACTCAAAGT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CCTTACCTTCCAGCCT	ref_6069_new	0	1	0	0	0	0	0	1	1	0
ATTGTCTTGCTTGTGG	ref_6069_new	74	108	94	90	123	69	103	86	127	64
AGGCTGTGCGTTTGTT	ref_6069_new	33	32	34	41	55	35	51	31	54	25
TACGATTTAAGGGAGA	ref_6069_new	50	68	64	57	47	50	64	48	55	47
TCTTTTTTAGTTACCT	ref_6069_new	30	62	33	32	49	43	46	29	51	24
CATCGCGAAGCGGCTA	ref_6069_new	96	104	99	88	95	80	98	76	117	89
CCGCGGCTCCTATTTA	ref_6069_new	20	42	29	23	50	27	47	22	48	21
ATAGTAGTGACGTACG	ref_6069_new	27	21	8	16	20	14	16	11	17	9
CCGTCAATTTGCATTT	ref_6069_new	4	18	7	6	7	4	11	4	19	11
CTGCGTGGAATGTAGA	ref_6069_new	0	0	0	0	0	0	0	0	0	0
CGGGGTGGAGGGCTAT	ref_6069_new	21	26	9	11	34	15	29	23	17	20
AGTACTGAGTGTTGCT	ref_6069_new	72	79	76	52	95	68	79	60	90	50
AGCCATCAATCCAGGT	ref_6069_new	43	113	52	39	95	40	102	24	97	34
TGCACACCTTGCAATG	ref_6069_new	37	80	67	29	81	41	62	36	75	44
GCGCTAATGATTTTCG	ref_6069_new	30	43	38	33	45	22	28	21	46	27
TTAGTGTTCCGGCCGT	ref_6069_new	0	0	0	0	0	0	0	0	0	0
TAATTCCCTTTGGTCA	ref_6069_new	34	50	38	27	42	32	63	33	41	28
ACCGTTGACCTTGCTA	ref_6069_new	11	42	9	12	30	10	28	13	19	12
GTCTTTGGTTGGGCAT	ref_6069_new	5	12	10	5	11	11	15	2	13	5
TCTTCAACACGAGATC	ref_6069_new	4	6	7	6	11	3	2	3	4	7
CCCTCTCGGTTAGACC	ref_6069_new	19	17	9	11	16	16	16	8	13	8
CTTCTGCGCACTTACG	ref_6069_new	17	36	38	31	44	14	40	20	45	13
GATGTACTTTCTGGCG	ref_6069_new	2	5	4	7	4	2	4	2	6	3
AAACGAAACCTGGTGA	ref_6069_new	15	24	25	23	24	18	31	17	32	16
TTGTCCATGTTGGTAT	ref_6069_new	15	24	31	29	39	21	43	22	37	17
AGAATAACAAATCAAT	ref_6069_new	8	14	20	17	27	10	23	10	23	10
CCGTTGTTTGCGTCAA	ref_6069_new	1	2	2	2	5	6	5	3	8	1
ACATATGTCGCCCGAC	alt_534_reverse	18	31	20	28	25	31	29	12	29	23
TGCGCGTACTGAGTCT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CGTACGAACTAGGTGC	alt_534_reverse	21	34	19	18	25	11	35	16	30	11
TTGTACGATTTCAATG	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAGATACCGTGCT	alt_534_reverse	21	35	44	24	25	21	38	27	34	19
TACGGCATTCAGCGGG	alt_534_reverse	11	11	23	11	10	13	14	11	12	11
CTAGAGTATAAATGTC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CGAATCATTTGCTATC	alt_534_reverse	30	34	22	45	38	41	34	42	45	31
CCATTTCTGCACTAGG	alt_534_reverse	2	7	3	3	4	3	12	3	5	1
TGACTAACGACTTGCC	alt_534_reverse	2	7	4	8	19	6	18	5	19	4
AGTAGTTAATGAATTT	alt_534_reverse	12	25	16	18	29	17	30	18	21	13
TTCTTTATTTGAGTAT	alt_534_reverse	10	11	19	5	7	16	13	11	7	16
CCGTGAGTAGACTCAT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTGCATGTCCATA	alt_534_reverse	14	19	26	25	25	24	26	16	22	20
AGTATATTCATCGATT	alt_534_reverse	33	36	26	30	35	25	24	19	34	22
ATCTCTGCTAGACTTA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTGAGCCGTTGAG	alt_534_reverse	126	172	147	124	151	110	170	95	191	102
TACACCTTAGTATAAT	alt_534_reverse	10	16	6	11	19	11	7	8	12	13
CATTTTCAACGATCGG	alt_534_reverse	12	10	11	8	8	12	4	7	7	5
CTCTTGAGTTGCACTC	alt_534_reverse	27	34	33	25	43	26	40	16	40	26
TACATGACCGGCTGTA	alt_534_reverse	29	33	40	48	35	26	52	25	46	23
TGGGAGGCTGGCAAAC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGAGCTCCCTAT	alt_534_reverse	95	164	127	135	132	118	148	140	148	100
CGCGATCCCCCTTTTC	alt_534_reverse	21	32	45	24	41	22	42	20	37	22
CTCATCCGATACATTA	alt_534_reverse	10	13	12	11	15	10	15	15	15	7
CGCTTATTGTTAACCC	alt_534_reverse	7	2	6	4	6	9	10	1	9	2
AAGCCTCTGTATACTG	alt_534_reverse	22	26	32	31	40	22	36	28	26	22
CGCCGGATCACCGAGC	alt_534_reverse	7	8	12	22	11	11	9	9	13	10
TCCCCACCCAGCTCTA	alt_534_reverse	25	44	35	33	38	34	60	25	56	42
CTACATATCTGCGCTC	alt_534_reverse	5	6	1	3	9	9	5	1	11	1
ACCGTCTGCGCGGTAC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGAATGTGAATCG	alt_534_reverse	133	167	157	142	148	120	182	96	161	97
TGGTTGCTCGCTGTGA	alt_534_reverse	13	33	17	11	35	15	23	12	28	8
CTCTTTCTTAGTCGGG	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCGCCCCGACTCC	alt_534_reverse	8	19	15	4	19	10	14	14	19	8
TCACTGAAGTTTGTAA	alt_534_reverse	12	10	19	17	18	19	15	16	21	17
GTTTCGAGAGGAGGGT	alt_534_reverse	10	7	15	10	3	8	14	4	10	8
AATTCTCAGTGTATGT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CCCCACGAACAGGTCT	alt_534_reverse	12	7	9	6	16	5	13	6	21	7
GGTCTGGAATTCTAAA	alt_534_reverse	5	7	4	4	10	7	5	2	7	4
TTTGTACGCAGTGGCC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CATGTTGTCCAATACC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAGGGCCGATCTG	alt_534_reverse	107	146	130	95	142	100	174	85	184	68
TTTCTTTTAAGTTGGT	alt_534_reverse	198	241	242	210	212	177	260	167	254	172
AGACCCCGACTCACTA	alt_534_reverse	28	42	25	23	45	23	48	29	40	25
GCGCATGCCTAAGTAA	alt_534_reverse	29	37	34	29	22	24	28	16	37	21
GTGAAGTTTCGTCTCG	alt_534_reverse	20	23	20	24	14	19	18	15	22	21
GCGTCTGGTAAATTGA	alt_534_reverse	5	1	8	1	3	3	7	4	1	3
TTATTCATGTGAGACC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGTGAAGGGTTAA	alt_534_reverse	16	12	14	13	18	16	18	16	21	12
CATACTCGTCATATTG	alt_534_reverse	27	29	24	15	41	21	33	25	31	37
ACTCGGAGTTATGCGA	alt_534_reverse	15	21	12	13	24	21	28	17	36	17
GCCATATAACATGGTG	alt_534_reverse	79	99	101	91	109	72	98	63	109	72
ATCCTGACTTGAGGTG	alt_534_reverse	23	31	44	21	40	31	35	33	43	43
GACCCTTCGGGTGTAA	alt_534_reverse	7	6	7	6	6	10	9	1	9	13
TAAGAGGTTCGTCTAG	alt_534_reverse	9	15	10	8	18	13	12	1	11	9
TTCAATGTCGGTATCG	ref_534_reverse	22	12	28	22	35	15	18	14	19	17
AATTTTGACCCTTCTG	alt_534_reverse	9	8	3	4	11	4	3	4	5	3
CCTCTACCGGCATATT	alt_534_reverse	2	6	5	5	5	3	5	3	6	7
ACGACCTGTAGCATCC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTGAGCTAATAAT	alt_534_reverse	13	10	6	13	12	10	11	10	9	14
CGTTATATCTAGAACA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
AACTTACCGTTCACGG	alt_534_reverse	4	56	4	12	66	9	81	6	79	6
TACGTAGCGATGAGGA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TCACATAAAGTGCGGG	alt_534_reverse	17	14	15	23	22	22	26	13	22	10
GGGCTATTATAAAGTT	alt_534_reverse	57	50	51	41	51	45	48	47	44	23
TCCCTCTAAGGGGCTA	alt_534_reverse	12	27	26	15	20	11	19	12	27	14
AGTAAGGGCCCTTTAA	alt_534_reverse	15	31	28	21	25	13	24	22	26	29
GTCCAGTCTATAAGTG	alt_534_reverse	11	21	6	7	24	6	22	6	23	3
AGTATATTCGCAGTTG	alt_534_reverse	38	57	42	44	42	36	47	29	53	39
GTTTAAAATATGGAGT	alt_534_reverse	64	89	81	70	87	55	66	55	89	68
AGTGTAAGTAACTATA	alt_534_reverse	10	20	15	22	25	12	8	6	23	25
CAATTTTCCTTTCCTT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTGTCTTTCTACC	alt_534_reverse	18	40	24	29	38	24	33	22	36	11
ACTAGACGGCGTCAGC	alt_534_reverse	25	45	32	31	55	24	45	28	43	24
AATTATTCCATTTAGG	alt_534_reverse	24	24	18	16	24	8	19	25	34	26
TTCAGTGCTGGTGACT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
ACCAAATCCTGCTACT	alt_534_reverse	31	38	38	37	36	36	50	20	34	31
CATGTCTGGCACGGCA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGTCGTAATTGCG	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTATGTGTGTGAT	alt_534_reverse	20	37	28	22	30	19	30	19	44	19
GCATCGACTCTAACTC	alt_534_reverse	14	18	20	13	29	15	18	16	18	16
GCCCACCCGCCAAGTG	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
AGTACTAGAGGAGCAC	alt_534_reverse	16	42	37	25	37	28	54	23	40	17
TCCCTGCGATGCGGAT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CAGATCGTCACTAGGG	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTCAAGAATAGAA	alt_534_reverse	4	11	6	6	4	13	8	2	16	5
GACCTATGGTTACGTA	alt_534_reverse	60	83	63	55	58	58	69	55	80	46
TATATCGTTTTAAGAT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCATTCCCTGATT	alt_534_reverse	2	0	4	1	4	3	8	3	3	3
ACGAGTGTCTTGGGGC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
GGAAATTCGAAATGGG	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TCTAAACTTCTAATAC	alt_534_reverse	12	20	23	14	25	20	30	20	28	13
ATGCAGTCCGGGCGTT	alt_534_reverse	12	9	16	14	19	8	10	8	17	10
TATATCGCTCATGTTA	alt_534_reverse	6	4	11	4	3	4	10	4	10	8
CTCATATTTTAGGCCA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGAACGATCGCTT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CAAGACTGTTTAATCA	alt_534_reverse	38	39	36	23	38	20	56	19	31	31
CCGGTACGTGACTATG	alt_534_reverse	1	17	5	8	9	5	11	3	13	1
AGACCTGGACTGGTTT	alt_534_reverse	148	161	153	140	160	135	182	121	159	128
GTCACGTAGCATCTAA	alt_534_reverse	1	0	3	0	3	5	7	3	2	4
TGTTTGGGTTTTTCAA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCAATTTGATTTT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCCCTCCTAAGGC	alt_534_reverse	41	45	42	42	64	43	56	35	64	34
GGGGGAGTTAGGTACA	alt_534_reverse	10	12	14	14	12	21	19	18	18	8
CGCACGCCGTTTGCTT	alt_534_reverse	30	47	33	26	41	35	42	17	61	24
ATTATTCGAGTCGTTC	alt_534_reverse	122	156	162	121	170	109	173	117	153	97
GTCTGCTCAACAGTTC	alt_534_reverse	8	15	8	9	10	7	20	7	7	2
AAGCCATTAACTGGCC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CATAAAATGTGCCAAG	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTATCCCTCTCTA	alt_534_reverse	15	20	15	15	18	15	20	9	24	14
GTGTCCATGCTGGATG	alt_534_reverse	2	2	2	5	1	2	2	0	1	2
GCTATTGCCAAGTCTT	alt_534_reverse	18	32	22	20	29	19	18	14	16	22
AGGCGTTCCCGCAGGT	alt_534_reverse	26	26	23	13	25	20	18	7	41	12
ATCTACCCCCCCTAAC	alt_534_reverse	8	33	16	12	35	17	32	16	30	7
TTAGGTTCTTCCCTGT	alt_534_reverse	40	49	57	49	71	41	73	48	65	51
GTATCTACTAAAGTCC	alt_534_reverse	1	2	2	5	1	1	1	2	3	2
TTCCATGGGCATTTCT	alt_534_reverse	24	17	11	19	20	21	23	18	22	20
ACAACCTCTGGGACTG	alt_534_reverse	8	12	8	4	13	9	15	7	5	10
TTTGGGAAGCCTCTTT	alt_534_reverse	16	13	21	23	15	15	18	19	21	21
TATTCGGATAGTGGGG	alt_534_reverse	23	31	23	31	26	25	38	24	47	24
ATGTTCCCGCATTGCT	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGCGACGGCTCTT	alt_534_reverse	30	47	35	26	49	33	39	19	40	34
TGACTAATCCCAGGCG	alt_534_reverse	43	56	57	45	52	49	45	41	66	50
TTCTGAACGATCGCTC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGATCCTTTTGCA	alt_534_reverse	19	19	22	13	14	13	23	9	16	9
ACACTGGACACGTCTA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CTTACGACCCCCCCCT	alt_534_reverse	13	5	9	4	13	13	7	5	8	12
GCTTCCGAGCACAGGT	alt_534_reverse	10	12	9	8	12	7	10	9	14	7
AGAGTTGTTACTCGAA	alt_534_reverse	6	9	4	5	8	7	7	2	4	6
TCTCACCATGGGATTC	alt_534_reverse	39	30	25	33	26	29	45	16	43	22
GGACAACGCTGTTTGT	alt_534_reverse	5	2	4	0	0	2	5	3	4	4
GTTCCATGTGAATATC	alt_534_reverse	9	9	11	8	13	6	9	6	8	7
TCGCAGCGACGTTTTT	alt_534_reverse	12	11	18	15	13	8	8	15	7	6
TGTACTACCCACCTGC	alt_534_reverse	28	83	28	23	86	27	90	25	82	33
TTCCTACGTTGTGCAA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTCCTATATTCCC	alt_534_reverse	10	13	11	15	18	15	8	14	19	9
GTTCCGGCCCCTTCAG	ref_534_reverse	29	44	35	30	47	32	45	36	43	27
GAGGCCCGATCATCAT	alt_534_reverse	13	11	15	11	13	16	5	13	13	13
GACTGGGCTCTACGTC	alt_534_reverse	70	93	79	74	86	73	98	81	104	71
TTACCTTGGGGGTAGG	alt_534_reverse	19	16	23	23	24	16	26	13	33	16
GCGGGGGGGGCAGTTA	alt_534_reverse	15	31	9	18	17	22	24	19	24	24
TTTGGTCAGCATAATT	alt_534_reverse	41	33	29	26	36	40	46	20	30	38
GGGTCATTCCCTCGAA	alt_534_reverse	43	55	62	39	69	50	74	31	57	52
GCTAGTCCGGCTTCTA	alt_534_reverse	81	100	97	81	77	91	123	60	92	66
GCAAAAGTTGTATCCG	alt_534_reverse	30	43	28	24	31	21	35	25	50	18
GCTAATGAGTACAAAC	alt_534_reverse	58	83	54	79	70	62	73	51	61	49
CGGCTGTAATTTCAAT	alt_534_reverse	18	24	25	17	29	15	28	7	14	13
ATGTTGCTTTTTTGGT	alt_534_reverse	9	12	12	11	8	8	6	7	15	3
CGGCCATTTCGGCTTC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CTTACGACCCCCCCTC	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
CTCACTTCACTACTGA	alt_534_reverse	6	7	5	2	6	1	5	2	2	3
TGGAATCAAAGCACTT	alt_534_reverse	3	0	2	2	3	3	3	2	3	1
TGTATGCTGCGTGGGA	alt_534_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGACGGTCATAAT	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTCGACTATTAAA	ref_850_reverse	2	1	4	3	2	4	3	0	6	3
CATCGGGTCCCATTTG	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGATTCACGCTTC	ref_850_reverse	4	13	10	4	9	11	8	4	12	6
GACATCAAAACGGCAT	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGCTTACATCGGA	ref_850_reverse	9	27	19	10	26	13	22	19	18	13
CAACTAATGTCTAGAA	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGCGTTTTTTAGC	ref_850_reverse	38	38	16	26	42	16	53	17	60	27
GGGTCATAGGTTTTTA	ref_850_reverse	15	27	11	12	36	12	37	11	36	7
GAATCGATTGTGGACA	ref_850_reverse	112	199	133	102	188	110	179	91	197	89
TCCCGGTTTAAATTGG	ref_850_reverse	16	19	16	23	18	5	31	9	33	9
CGCTAGCTTTCTCTGA	ref_850_reverse	3	6	5	1	7	2	11	5	7	5
CGTATCTCTAGGCGCC	ref_850_reverse	14	39	25	24	30	17	36	16	35	13
TCTAATCTTATTTTCC	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
TGTATATAAGTGAGTT	ref_850_reverse	11	29	15	15	22	8	24	11	29	15
CACTGTTTGAGACTCA	ref_850_reverse	11	18	12	10	9	8	14	9	9	2
GCCCGGCTGATAGACA	ref_850_reverse	6	7	6	5	10	1	3	4	10	5
TGACACAGATAACACC	ref_850_reverse	23	49	28	29	45	27	56	7	36	19
GGATGTGCTTAGCGCA	ref_850_reverse	12	8	7	6	15	17	19	15	17	6
CCATCGCTTTTCGTGC	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTACCTACGTTAA	ref_850_reverse	31	73	25	28	62	18	73	20	73	23
TCCCCTGATCAGGTTG	ref_850_reverse	23	91	37	25	59	19	89	21	87	22
TTCCTCTTCAGGCCGT	ref_850_reverse	60	101	95	75	124	59	124	70	124	51
AAGGCATACTGACTCT	ref_850_reverse	13	22	7	7	22	7	23	13	21	16
GAATATGCGGCCGGTA	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTGCAATCTTTAG	ref_850_reverse	50	96	57	54	96	42	117	44	132	43
AGTAATACCCCCTCGT	ref_850_reverse	9	34	8	7	40	7	21	7	28	8
GATTTCGTTCCGGAAC	ref_850_reverse	34	72	40	50	75	49	72	45	69	36
CCAATAGTGCGGATTG	ref_850_reverse	68	155	88	64	127	59	162	62	148	56
ATGGGTCAGTGGCTCC	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
GTATTCTCACTGGTAG	ref_850_reverse	31	62	31	34	73	22	69	20	78	25
GCATCATATTGAGTTT	ref_850_reverse	40	87	53	33	88	39	78	33	89	36
CCACGCATGCGGACCC	ref_850_reverse	19	47	38	33	29	29	45	23	48	19
TGTGTCTTTGGACATT	ref_850_reverse	16	28	12	16	45	17	31	21	39	15
CGTACTTTTAGGCACA	ref_850_reverse	14	32	22	17	32	23	26	18	38	24
TCAAACATCGTGACAC	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
AATTGAGTTCCTGGGA	ref_850_reverse	179	338	209	169	340	184	371	186	391	150
TACGCAGCTTCATTGA	ref_850_reverse	18	33	15	10	25	21	34	14	30	8
TGCAGAAGAGGGTGCA	ref_850_reverse	12	9	6	13	19	3	9	8	23	11
GGCGATTGGGCCCTCT	ref_850_reverse	3	10	7	9	24	2	21	5	14	8
GTATACTTAAGCTTCA	ref_850_reverse	5	11	11	9	21	5	12	5	9	12
GAGCGTAGGTTAGTTA	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTGTAATTCCTAG	ref_850_reverse	132	232	151	111	197	130	225	125	222	118
TGTCGGGCTCCTTGAA	ref_850_reverse	18	23	13	3	25	17	23	6	21	7
GTGTTTGAGGTCAACT	ref_850_reverse	11	19	11	3	14	2	20	7	18	3
CGCTAGCCCTCGAAAC	ref_850_reverse	41	131	60	69	172	46	130	49	129	40
TCATAATCCGAAGCCT	ref_850_reverse	32	45	43	33	46	27	55	18	46	28
ATACGTCACTGCTATT	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
GCCACGCATTACATGT	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGAAGCGCTCGGT	ref_850_reverse	5	6	11	4	13	7	15	13	11	8
CTATGCACTCGCTCTA	ref_850_reverse	6	12	7	8	16	10	24	11	11	6
ATGAGTTGCTTGTCGC	ref_850_reverse	20	52	20	21	32	25	40	20	60	18
CGAACTTTTCGGATCC	ref_850_reverse	7	11	16	5	10	9	6	9	8	12
TCACGTGTCGAAATGT	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCTAGGCGTTCA	ref_850_reverse	10	12	11	15	34	12	26	9	21	11
CCAATGTCCCCAGAAC	ref_850_reverse	33	67	37	41	53	36	69	33	49	28
AATGCTGTACATGGTT	ref_850_reverse	12	21	19	18	25	13	31	13	18	11
ACGTCTCAGTCGTCTG	ref_850_reverse	8	18	13	12	24	8	24	10	20	8
TATGCGAGTGGACAGA	ref_850_reverse	16	20	20	23	25	21	31	20	37	18
GTTACTTGATATCGAA	ref_850_reverse	7	13	6	5	7	10	7	7	13	8
TCATTTGCCTAGCGGA	ref_850_reverse	10	15	16	11	15	8	29	12	18	7
CAGACGATGTTCTGTC	ref_850_reverse	30	55	39	38	53	28	71	28	71	39
AAGCCTTTGGGAGTAT	ref_850_reverse	23	24	19	19	33	20	48	20	29	16
TGATCCTCGCGCATGG	ref_850_reverse	27	47	40	23	59	31	48	20	43	23
TCGGTGAACTTGCTCC	ref_850_reverse	97	149	129	91	177	102	199	85	187	92
CTTGGCCCTCGGGTAC	ref_850_reverse	28	22	35	14	40	14	45	16	33	23
TAGGGTTTTCGTTCTG	ref_850_reverse	58	128	78	63	121	59	110	66	109	49
TAACGGAGGGCTGGGT	ref_850_reverse	25	20	19	17	27	9	29	20	37	14
ATATCCGATTTTGCTC	ref_850_reverse	21	24	29	21	36	19	49	13	41	27
TCATTGGTCTCCCTAG	ref_850_reverse	0	3	3	0	2	0	4	1	1	0
CCAACGTGTCGCAGCA	ref_850_reverse	0	0	0	0	0	0	0	0	0	0
GGGAGCTCTTTTCAAG	ref_850_reverse	11	17	15	7	24	10	4	17	19	16
CGTGCATGGGATTTGA	ref_1514_fdr	1	1	1	1	1	5	2	3	3	0
AATATAGCGTGGTTCA	ref_1514_fdr	39	26	51	38	20	33	26	28	33	26
ACCCGCCGTGTGTATA	ref_1514_fdr	3	4	5	6	5	7	5	5	2	2
TCTTTTCGTCTGTATG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTTCGAATAAAGT	ref_1514_fdr	18	17	28	19	25	27	17	14	12	13
CAGGTTTACGTGCATA	ref_1514_fdr	1	0	0	0	0	0	0	0	0	0
TTAGTCCGCTCAGTTG	ref_1514_fdr	24	31	28	24	22	30	28	26	30	20
GCATTGGGACAACGTA	alt_1514_fdr	872	823	1095	931	866	826	864	835	933	765
TTATCTATGACAGACA	ref_1514_fdr	8	10	14	15	4	8	6	9	6	7
GCGGTGTTATTGCCCG	ref_1514_fdr	11	24	15	14	11	14	14	11	23	11
GTTTCTTGGGGGAGAT	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTAGCAGCCTTAA	ref_1514_fdr	197	168	207	182	160	187	164	162	208	154
ACAATCCTTTCGTCTT	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTATTCAAGGGCT	ref_1514_fdr	22	12	23	34	19	20	13	11	18	13
TAGTTCCGGTTCGGGT	ref_1514_fdr	18	16	17	21	28	27	33	12	34	26
TAGTTTACGACAATCC	ref_1514_fdr	73	51	55	57	48	48	47	45	43	35
TTCCATGCGTGATTAT	ref_1514_fdr	6	14	12	11	4	13	13	14	15	12
GAATCTTGTTTAACGG	ref_1514_fdr	28	28	40	28	24	29	40	29	26	27
TGACCGCATCAGCGTG	ref_1514_fdr	15	24	24	20	15	20	21	20	26	21
AGCTCACCCCAGCATC	ref_1514_fdr	46	54	54	45	44	38	61	48	53	37
GCGGCTACTCTACGAC	ref_1514_fdr	36	47	49	38	52	42	44	30	43	26
CGCAGAGTCGGTCTGA	ref_1514_fdr	17	26	21	15	25	19	23	12	20	20
GCTACCTTTCCGTGTC	ref_1514_fdr	3	15	3	3	10	2	3	3	9	4
ATCAGAGGGGCTGATA	ref_1514_fdr	64	57	89	57	64	48	72	49	73	50
GGTTTTTCGTATTCGT	ref_1514_fdr	92	67	94	88	107	90	106	77	99	74
CATATCGTTTTAAAAG	ref_1514_fdr	111	108	141	131	113	122	117	130	110	110
GTCCGCAAGCTTGCAC	ref_1514_fdr	10	24	27	27	18	9	21	20	32	18
ATGGACGTTTAAGGCT	ref_1514_fdr	16	9	13	21	27	23	13	13	15	23
TTAAAACGCGCGCTAG	ref_1514_fdr	38	31	32	38	30	48	33	26	30	30
AGTTTTGTTATCCCGA	ref_1514_fdr	27	26	36	33	29	40	31	36	37	41
AGCTTAGTTTTGACCG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
TGAAATCGGTACATGG	ref_1514_fdr	144	142	218	173	154	137	178	145	202	152
GGTGCAGTGGACTTCG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTATCTTATGGTT	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAGGGATCCTCTA	ref_1514_fdr	36	31	38	20	29	41	15	40	34	14
ATCATTCACATTATCG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
CTTCACATTCAAGATC	ref_1514_fdr	19	12	24	27	21	14	19	21	14	15
GCATTGGGACAAAGTA	ref_1514_fdr	0	0	1	0	0	0	0	0	0	0
TTGGTTGGTAATAACG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
TAGATGTCTTTGTGGC	ref_1514_fdr	15	16	16	21	14	16	22	22	23	19
TACGAGGGCCCCGAGA	ref_1514_fdr	17	17	23	16	25	16	21	14	14	14
TTACGTTAACTAACTG	ref_1514_fdr	46	60	64	52	53	51	47	44	43	35
TGGTAAATAGCTTATT	ref_1514_fdr	63	59	86	90	68	63	65	64	74	57
TTTTTCGGATATATGT	ref_1514_fdr	60	51	62	47	30	50	36	51	48	38
CTCGTTTGCACCATTG	ref_1514_fdr	96	113	108	101	106	70	123	91	109	90
AGGTTTGGTAAGATTG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGTGGTTTGTTGG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGGTGGGAGTCAC	alt_1514_fdr	56	41	74	68	60	44	50	49	42	43
ACCATGTGGGTTTTGC	ref_1514_fdr	29	21	37	26	24	23	37	35	31	23
CAGTCTTCGCAATTTC	ref_1514_fdr	21	22	24	14	17	29	16	16	25	24
GACAAGGAGTCTCCTT	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
CCAAGTCCTGTTGAAC	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGAGTGGTGAACT	ref_1514_fdr	31	57	44	52	55	41	37	55	55	26
AATAAGTATGTCTGAC	ref_1514_fdr	45	48	66	58	49	52	51	49	59	60
TGTGGTGTGAATGCCT	ref_1514_fdr	56	50	50	61	33	45	48	44	56	41
CTCCTTACCAAATTGC	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTCTCTCTACCA	ref_1514_fdr	62	88	81	60	81	51	76	54	96	53
TCAGTTATGATTTTGG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCTATAGATATCC	ref_1514_fdr	10	8	18	14	10	7	16	13	25	10
AAGATGTTAGGGTCCT	ref_1514_fdr	19	25	34	16	11	20	21	11	24	14
TGGATGCATTTATCAG	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTCAGAATTTCTT	ref_1514_fdr	41	41	25	21	40	41	36	41	38	43
AAGATGGGCGTGGTAG	ref_1514_fdr	8	15	12	18	13	9	5	6	12	7
CAAACTGCAAACGCCC	ref_1514_fdr	64	69	78	67	70	50	70	38	62	39
TTTGAACTTGCCGACC	ref_1514_fdr	13	13	27	22	14	16	14	7	11	15
GGTTGCTCGTAGGTTT	ref_1514_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGTGCGAATGCT	ref_1514_fdr	134	179	211	178	159	178	171	167	179	174
ATTTAGTAAACCCGTG	ref_1514_fdr	97	85	130	128	93	76	92	102	93	90
CATCTACAGTGTTCAT	ref_1514_fdr	42	38	38	40	42	32	39	27	33	28
GGCATTAATGGACTAC	ref_1514_fdr	36	18	41	32	19	33	29	34	27	30
CAGCCTTTCGGTGTAA	ref_1514_fdr	9	30	18	8	21	14	22	13	22	22
GTGGGCTGTATAACGT	ref_1514_fdr	7	7	7	10	3	5	13	6	4	2
TCCGTCGCTTATTATA	ref_1514_fdr	8	32	13	17	50	12	35	17	31	9
CGGGGTTTAAACGCTT	ref_1514_fdr	25	32	32	19	28	36	14	16	23	21
CCAGGGCCCAAACCTT	ref_1514_fdr	3	22	1	10	14	2	17	2	19	4
TTTGCATCACCTTAGC	ref_1514_fdr	28	50	32	35	34	22	34	26	41	22
TCTTTTCATCTGTATG	ref_1514_fdr	41	36	38	36	31	36	30	26	28	28
TCCCCTCGTTTTTAAC	ref_1514_fdr	192	214	226	193	209	151	204	157	212	149
AATTCGTTAGTTTAGA	ref_1514_fdr	12	12	13	9	3	3	7	9	8	11
AAGAGATGGAGACAAC	ref_1514_fdr	1	3	1	1	3	0	2	2	3	3
CGGTTCTGATTGGGTA	alt_244_RC	188	128	243	223	152	205	135	181	147	160
CCTACCATCAATCTTC	alt_244_RC	0	0	0	0	0	0	0	0	0	0
GATTGACTTGCTGATA	alt_244_RC	12	9	25	6	8	8	7	5	6	4
GCCATTGGTGGACGCG	alt_244_RC	35	22	42	31	22	27	26	21	20	31
ACGTCGCTTTCTGATC	alt_244_RC	50	23	50	32	25	24	32	45	26	35
TCGAGTTATTATGGCG	alt_244_RC	0	0	0	0	0	0	0	0	0	0
AAGGGCGGCTTTTCGG	alt_244_RC	0	0	0	0	0	0	0	0	0	0
TGATCCGTCGATAGAG	alt_244_RC	144	108	196	129	101	159	103	117	124	117
TTGGATGCTTTCGGGT	alt_244_RC	40	29	39	42	40	33	39	37	39	44
TCATTTAGGGATCCCG	alt_244_RC	28	27	39	51	12	41	30	44	24	38
TAATTGTGACGCTTCT	alt_244_RC	23	6	32	19	10	22	7	16	8	13
TTGGGAAAGATCTTAA	alt_244_RC	38	21	44	30	18	41	14	27	21	37
TGCCCCGTCTGGCCTT	alt_244_RC	8	18	24	12	9	22	10	18	15	14
ATCCACTTTTGAAGTC	alt_244_RC	28	18	18	25	20	26	16	19	21	14
GGGTCTCAGTTCTCAT	alt_244_RC	30	9	36	16	22	24	11	23	14	24
ATTTGCCCGCATTGAT	alt_244_RC	0	0	0	0	0	0	0	0	0	0
TGCGTCAATAATTTCT	alt_244_RC	0	0	0	0	0	0	0	0	0	0
CGGCTCTTGATGGATA	alt_244_RC	63	40	77	72	44	57	41	53	43	44
AAATGGTAGATAATTG	alt_244_RC	72	49	77	72	43	76	40	77	47	72
TGAGGCGCTTATCCAT	alt_244_RC	52	33	44	49	37	34	30	42	38	41
GTTAGACCTGAAAAGT	alt_244_RC	0	0	0	0	0	0	0	0	0	0
CTGTCTGTAGGTATGA	alt_244_RC	2	4	9	11	3	3	4	2	5	7
CTCCCATGAGCGTTTT	alt_244_RC	67	34	63	65	30	61	44	49	30	49
CCTACTTTGTTACTTG	alt_244_RC	20	32	30	20	26	15	42	24	33	11
CTCGTCTATTTGTGCC	alt_244_RC	49	113	60	66	112	50	103	63	116	41
GATGGTCTGCAAGCTA	alt_244_RC	0	0	0	0	0	0	0	0	0	0
TACCGATTCGTTCGGA	alt_244_RC	130	93	157	145	103	125	117	157	98	127
GTCCGTCTTCATGCAG	alt_244_RC	13	2	8	12	7	19	8	8	3	6
CTCTAATCATGTACTG	alt_244_RC	0	0	0	0	0	0	0	0	0	0
TCCAATTCGATTTCAC	alt_244_RC	7	6	6	12	5	4	12	5	14	8
TAGACAGAGCTCGCTA	alt_244_RC	20	27	35	34	27	26	39	37	33	30
CCCTTTGAGTAAGTCT	alt_244_RC	19	34	34	33	26	24	35	29	30	27
CGGAGTACAGCAAGAA	alt_2040_upstream	37	49	46	31	52	33	48	31	38	33
CCAATTGAGAAATGTC	alt_2040_upstream	55	70	61	34	64	44	49	35	65	54
TATCTACGTCTAGTAT	alt_2040_upstream	11	26	10	9	23	8	22	2	22	9
AAGACTCATAGCAGGG	ref_2040_upstream	39	122	75	54	112	54	115	55	107	57
TCTCTAGTGATGTAGT	alt_2040_upstream	30	33	33	36	60	27	35	32	47	27
CGCGAGTTTTGGAAGT	alt_2040_upstream	30	52	49	40	59	33	45	28	39	36
AAATTTAGGCAGTTAT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCCACGTTGTTCC	alt_2040_upstream	5	11	3	9	9	5	13	1	4	7
AGCGATTCATAAAGTG	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
CCTACCATGCTCACCT	alt_2040_upstream	5	76	16	9	90	8	87	8	67	14
CTGTAGGCATAGCGAC	alt_2040_upstream	62	115	77	97	109	78	118	53	140	48
CATTTGGCCTCTGTAC	alt_2040_upstream	87	129	110	85	102	85	142	81	145	75
GGCCACTGTAACATTA	ref_2040_upstream	28	53	43	27	47	24	55	27	62	31
TATTTGCATCCAGAGC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
AACTTGCTTTAGAAAT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTCAGGAGCAGGG	alt_2040_upstream	24	36	30	16	27	31	40	27	43	19
CGTTTAAAGTGACATT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
GAGTGCTGTAAGCTTG	alt_2040_upstream	18	30	15	15	39	17	39	16	30	15
TTAATTCTCAACGACC	alt_2040_upstream	14	18	3	7	13	13	6	10	16	3
TCATCTAACTCTCGCG	alt_2040_upstream	81	90	106	57	111	96	84	70	110	74
GTCCCACGGTACGAGT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTTCGCCTTATAT	alt_2040_upstream	7	18	10	4	12	2	19	11	17	14
CGGAACGTCTGTCCTT	alt_2040_upstream	35	117	32	34	103	26	100	28	120	23
TCCAGAGGCATTAAGA	alt_2040_upstream	6	14	13	13	10	10	19	6	13	4
TCACGGGCGACTCGTG	alt_2040_upstream	9	7	4	3	7	1	5	1	5	3
TATCTGTAGGCTTCTG	alt_2040_upstream	8	7	3	9	5	2	7	5	6	2
CAAAATAAAAGCCTAC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGATCGCTGGGTG	alt_2040_upstream	3	53	9	2	51	7	44	10	51	6
TCGCGTATGTAGTGCA	alt_2040_upstream	7	15	17	4	16	13	17	10	18	8
AGATGTATCCAGCTAA	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
TGTCACGTTGGGCCCA	ref_2040_upstream	9	15	8	9	4	11	14	7	12	2
TGCTCTTGTGGGTACT	alt_2040_upstream	43	56	62	56	78	52	67	48	70	43
CGACCTTGGATCGCGC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
TTTCACTTTGCCGGAC	alt_2040_upstream	29	57	51	34	66	29	43	25	46	29
ACAGTATTGACACCTA	alt_2040_upstream	19	20	14	15	24	21	20	14	36	19
TTTCTTGCGGGTAATC	ref_2040_upstream	45	59	62	55	49	56	74	52	82	60
GCCATAACGCAAGAGC	alt_2040_upstream	52	77	69	52	72	40	93	57	84	39
CCAATCTTTTAGACAA	ref_2040_upstream	60	81	69	47	98	55	99	37	107	38
GTTGGAGCTTCAACCT	alt_2040_upstream	65	112	98	72	77	59	95	84	125	67
CGATCTCGGATCCTAG	alt_2040_upstream	2	4	3	1	1	2	2	1	7	1
TCTCTTGCAGGGCTCC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCTAGCAAGGATA	alt_2040_upstream	13	24	27	33	25	28	41	28	32	21
ATTAAATCGTTAACCC	alt_2040_upstream	10	10	15	14	18	19	15	12	13	4
GATTACTTCCTCCCCA	alt_2040_upstream	7	12	3	8	23	6	10	5	6	4
ACAACGTAGACAATTT	alt_2040_upstream	7	23	19	6	16	8	25	10	12	12
CTACCGCGTACTTCAT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
TACCGGATGAGGAACA	alt_2040_upstream	9	14	13	7	14	13	16	12	10	8
GTACTTTGATTTGTTG	alt_2040_upstream	8	22	15	16	13	9	12	11	24	7
CTATTTAGCCCCAGTG	alt_2040_upstream	8	20	16	8	27	9	20	11	16	6
GTGGCAATGGGGCCCC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
AGAAATTGAAATTGGA	alt_2040_upstream	3	5	3	11	3	7	9	5	1	5
GGCTTCGTTTTAGCGG	alt_2040_upstream	7	14	12	6	17	12	19	12	15	11
ACAGTCCGTTCCTCGC	alt_2040_upstream	11	16	20	20	22	21	21	12	24	33
AGTGGGTGTTCTGCAA	alt_2040_upstream	8	22	9	7	14	6	15	5	18	7
TCCTGTAGGCAGGCGT	ref_2040_upstream	16	22	19	16	27	12	30	11	21	9
ATGCACCGAAATGTTT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGCGACTGCAGCG	alt_2040_upstream	21	21	23	13	12	8	20	8	26	14
ATTTTGTAGAGACTTT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGCAGTATTGCCT	alt_2040_upstream	11	22	12	14	23	16	26	11	20	15
ACATAGCGCTAAAGCG	alt_2040_upstream	30	51	31	27	66	22	53	28	56	28
TCCTGTGTTTTCTAAC	alt_2040_upstream	51	71	50	45	68	38	81	34	73	42
TTGCGCCTTCATCATC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
TTAATCCTTTCGATGC	alt_2040_upstream	14	16	13	11	9	14	17	9	13	12
TCAGACTCTTAGGTGA	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
TGTACAATCGACAACT	alt_2040_upstream	30	64	43	47	63	33	61	21	51	30
CCTGTCGTCACTGTAC	alt_2040_upstream	4	15	2	3	14	2	21	5	15	5
ATTATCATCTCAAGCT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTTGGGAAACACA	alt_2040_upstream	12	28	21	21	19	7	22	7	33	4
CAGATAGGCGCAACGG	alt_2040_upstream	9	10	18	12	7	9	8	16	13	4
AACTTCTCCTTGACTT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
ATATTTGAAGACTGCG	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
AATAGCGCCCTTCTAT	alt_2040_upstream	32	34	28	26	50	28	56	19	52	21
TCTAGCCAATCATCTT	alt_2040_upstream	30	73	50	40	73	33	59	35	47	35
TTTGCCGCGGCGGGCT	alt_2040_upstream	11	23	18	8	18	18	16	11	26	10
AGCCGCTACCTCCGAA	alt_2040_upstream	2	6	8	5	10	2	11	3	14	2
CTGACGCACTCACTTT	alt_2040_upstream	54	71	52	53	57	49	68	34	74	39
ACTTTGGCCTGAGGTC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
GAGGATGCGCAAAGGC	alt_2040_upstream	131	148	169	104	174	107	145	105	194	110
ATTATGTTTATCTGCC	alt_2040_upstream	68	85	67	64	99	68	84	53	106	61
TGTTTTTTGAAACGCA	alt_2040_upstream	34	40	35	45	54	31	53	36	45	32
GCGCTCAAAGCAGTGA	ref_2040_upstream	35	35	30	18	53	43	51	26	44	25
ATATATATAACCGTCT	alt_2040_upstream	2	5	5	3	8	3	9	4	7	3
TAGTTTTCTGATTAGT	alt_2040_upstream	14	12	8	6	11	9	20	10	11	6
CTACGCGAACACCGAT	alt_2040_upstream	39	66	45	39	68	26	65	38	76	34
GCCACTGGTCTATTCT	alt_2040_upstream	77	172	110	85	194	86	184	70	170	68
TCCGAATAGAGGTCCC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTAGTGATGTAGT	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCCATTACGATTC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
GTTATTCGGATTAGAT	ref_2040_upstream	155	256	131	133	220	142	219	103	266	110
CAGAATATGTAGATCC	alt_2040_upstream	17	20	15	12	30	14	22	15	40	21
CATTTGGCTGTGGACA	alt_2040_upstream	13	24	14	6	17	9	19	16	26	11
CGTATTCGTGCATTAC	alt_2040_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGCTTCAACGCGA	ref_2040_upstream	26	43	39	44	53	47	44	29	65	29
CTTCTGTTTAGGTCGA	alt_2040_upstream	8	6	2	7	6	5	8	6	4	2
CCCAAATTATAAGCAC	alt_2040_upstream	19	32	13	29	29	19	36	20	30	12
CTAACACTCGAATATG	alt_2040_upstream	23	98	20	20	99	27	98	22	59	23
CCGACAGCCAGGTGTG	ref_2040_upstream	65	148	85	89	162	60	180	66	172	41
TTTGTCGAGGTGACTC	ref_2040_upstream	43	69	42	39	73	41	83	35	67	39
TTCCCCTTTCAGGATA	ref_2028_upstream	10	9	11	10	5	5	14	8	10	10
GATCTCTTCATAGGGG	ref_2028_upstream	170	93	230	218	84	185	86	164	89	168
CAAGTGCTGGATCTAG	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
AGTCGTCAACGCGGCG	ref_2028_upstream	25	12	29	20	13	36	11	39	19	27
TAGCGGGATCAGAGCT	ref_2028_upstream	35	22	44	43	35	46	20	31	19	42
GTGGGCGCGTGTGGAT	ref_2028_upstream	126	61	160	108	58	143	47	126	59	114
AGATCTTTCTGCTTTA	ref_2028_upstream	103	47	109	95	59	102	54	111	52	93
TGTTCCCATCCGTAGC	ref_2028_upstream	51	36	62	76	40	61	47	50	19	47
CTCGTGCTTACCTCGC	alt_2028_upstream	109	194	112	88	201	107	203	91	182	75
GACGGACTTATCACAC	ref_2028_upstream	101	59	128	99	56	95	67	99	57	90
GCGATCTACCAAACGG	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
GGATTTTAGAGTGGGT	ref_2028_upstream	59	32	89	56	27	43	22	61	31	49
TTGTGTACCATTATGT	ref_2028_upstream	50	22	66	57	26	50	23	54	26	43
CCTGCTCGAAATTTTT	ref_2028_upstream	12	10	19	10	6	7	4	19	9	7
TTCCCATCTTCTGTAC	ref_2028_upstream	209	113	270	219	109	192	100	172	133	160
CTTTAACCCTAGCTAG	ref_2028_upstream	4	1	21	11	7	5	3	11	4	7
TTTATAAACCCGCGAT	ref_2028_upstream	141	58	193	156	82	115	62	131	63	125
GATGATTAAATTTCCG	ref_2028_upstream	82	38	104	90	53	100	42	67	30	78
CACAGCCCGTGTTGCT	ref_2028_upstream	150	68	190	177	77	148	76	140	80	132
GCCGTGTCCGCGTGGC	ref_2028_upstream	152	76	211	189	69	154	88	171	81	144
CCGCTCTGCACTTTCT	ref_2028_upstream	56	48	64	49	63	44	41	55	55	53
GACTGGGCGGAATTGT	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGTGGATTTATTC	ref_2028_upstream	94	61	90	69	57	77	57	86	47	73
TACTGCCAGGACGGCT	ref_2028_upstream	350	183	418	325	195	323	180	334	175	273
GCCAGGTCGGTTTATG	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGAGATGGCCGTA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
CTCAAGCGGATATGTC	ref_2028_upstream	166	89	227	191	92	197	92	164	105	165
TAGAGGGACGCCTATA	ref_2028_upstream	2	1	4	3	3	7	0	2	3	5
GTCACGGCGGTTCTAA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
TATGTAGGGTGGGCCG	ref_2028_upstream	3	5	11	7	3	3	3	6	3	5
GTTTAGGCTATTGCCG	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTTCTCACCAGCA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
GCCAATATGTTCTACC	ref_2028_upstream	41	25	57	39	20	36	30	41	23	39
TAGGTCCATCGACGAT	ref_2028_upstream	22	6	29	17	4	15	3	26	7	10
CTCCCCAGTTGAGTCT	ref_2028_upstream	3	24	8	5	18	2	18	6	35	5
ATTACACTTACGGCTA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
AACGGCAGACGACGCC	ref_2028_upstream	344	167	388	308	160	320	179	302	189	302
CTCGGTCCCTTATACT	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
AGTATTTATCATTTAG	ref_2028_upstream	21	13	30	23	6	26	8	16	15	23
ATTTCTGTATTGGTTT	ref_2028_upstream	16	4	26	19	7	13	5	12	5	11
ATATCATTGCGCCTCT	ref_2028_upstream	24	11	21	17	11	21	12	18	8	17
AATAGTCGGGGTCTAG	ref_2028_upstream	33	21	36	28	15	36	15	26	13	22
GGTAAATTCTTATTGT	ref_2028_upstream	15	15	26	22	11	17	9	16	8	10
CGGTGTTGTGTACGTG	ref_2028_upstream	157	74	198	172	101	184	81	163	99	146
GAATCAAATGGCCCAT	ref_2028_upstream	126	55	164	145	67	152	65	123	61	126
AATCGTCAGAGGCCGG	ref_2028_upstream	62	16	51	66	22	56	15	52	23	49
GTTTGATTACAGATAT	ref_2028_upstream	4	27	8	6	23	6	24	7	10	12
TTGGTGCGACACTTTA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
CAACCGAGGGTCTAAA	ref_2028_upstream	470	199	518	449	198	393	211	421	239	377
TCTCTTCCCGTTTGGG	ref_2028_upstream	41	13	38	30	12	32	15	31	17	42
CGTGTCCCGATTTTCT	ref_2028_upstream	28	20	47	42	25	44	29	39	26	49
AGGGACAGTTTATGTG	ref_2028_upstream	29	25	37	38	25	43	27	36	16	24
GTACAATAGTCCGTTT	ref_2028_upstream	27	11	30	32	17	19	19	29	15	27
CGATCGCGTATACTGT	ref_2028_upstream	26	29	44	24	19	52	25	35	20	30
GGGTCTGTAACTTCCC	ref_2028_upstream	73	39	85	98	41	85	48	74	54	84
TCTAAATACTGTCATA	ref_2028_upstream	148	62	172	124	74	139	78	115	74	98
CCGCATAGTTGTCTTA	ref_2028_upstream	8	22	7	11	24	3	24	0	22	10
ATTAACTGCCCCGGTG	ref_2028_upstream	50	38	57	56	28	39	43	52	38	36
CCCTGGGTGGAGACAT	ref_2028_upstream	32	16	40	37	17	45	12	26	25	26
TGACTTATGGTCAACC	ref_2028_upstream	134	74	160	155	81	151	79	144	70	130
TAATATTGCCCTTCAG	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCGGGTGGTCTGT	ref_2028_upstream	11	4	14	13	6	11	2	14	12	13
TGGACATTTCCTGTCA	ref_2028_upstream	141	48	143	111	72	96	59	103	68	101
GCCCGCATACGTCTGT	ref_2028_upstream	127	80	192	135	97	132	95	165	109	126
GCGAGGTGTACATGTA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTTGAAAGGCCT	ref_2028_upstream	122	63	150	114	64	109	68	105	84	114
CGCGTTGAAGACCGTG	ref_2028_upstream	214	99	217	206	81	209	96	196	97	178
CCCTGTTCTTGTATGG	ref_2028_upstream	38	43	84	55	36	51	36	30	42	49
AAGGATACGGCCTCCT	ref_2028_upstream	132	76	188	152	88	157	83	139	86	108
TCTTTTGTTCTAATCC	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
AATTGCATCGCGCCGT	ref_2028_upstream	11	14	18	10	5	16	9	12	10	21
TTTTACCACATGTAAG	ref_2028_upstream	211	163	240	204	173	183	185	191	183	181
GCCCCGACACGCGCAC	ref_2028_upstream	460	274	568	530	272	489	324	464	294	454
CTATCCACAGAACGCG	ref_2028_upstream	110	74	147	119	76	129	80	123	84	96
CCTGAAGTCGTTATTA	ref_2028_upstream	10	28	11	8	19	9	20	13	18	6
GAGTATATACTTCGCG	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGCTCTGAAGCTA	ref_2028_upstream	182	87	234	188	83	188	93	169	81	165
AGTTCTGAGTGTGGAA	ref_2028_upstream	5	1	3	5	1	7	4	4	4	7
GCCACTCCCGCCACTG	alt_2028_upstream	99	235	138	102	226	111	254	126	267	99
AGGCGTGTCTGTTCCA	ref_2028_upstream	78	30	109	78	43	74	34	63	34	63
CCGACAGGCTCGCGGC	ref_2028_upstream	1	24	6	4	18	2	11	7	21	5
TAGGGACGGGCTAGGG	ref_2028_upstream	65	26	69	67	42	47	29	67	34	39
TTTATAAAGTTTTCCT	ref_2028_upstream	98	53	124	115	52	103	41	91	48	112
TGAATGTGATGTCCGA	ref_2028_upstream	71	28	93	88	27	76	41	55	38	79
CGGGTGTGGATTTCGA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
CTTATCAGTTCGGTCT	alt_2028_upstream	26	48	35	28	31	24	37	20	50	27
CTTGGCATGTCAAGAG	ref_2028_upstream	64	49	102	83	44	85	65	80	55	80
TCGAACAATGCTCACA	ref_2028_upstream	17	3	19	18	3	11	5	14	7	12
CGACCCATATCACATC	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTTTGTCAACCCC	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTGGTTCCTTATT	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGTACTTGCTATT	ref_2028_upstream	19	15	24	18	11	27	18	22	9	17
ATGTGGCCCATTTAGT	ref_2028_upstream	6	3	14	13	7	14	6	14	13	12
CCCGCCATAACAGGTA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCTATTTTGTGGA	ref_2028_upstream	36	18	35	39	15	33	25	38	25	26
TTTCTTCAGGGAAGCT	ref_2028_upstream	155	74	182	144	66	155	82	141	69	159
CCTTTTTGGGTACTGT	ref_2028_upstream	23	28	20	32	14	28	18	18	25	28
CCAACCCTTTCTTAGA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
GAATAAGGGCGTTTGA	alt_2028_upstream	114	53	149	112	51	117	43	92	54	87
CAAACTACATCTCACG	ref_2028_upstream	121	68	132	105	79	102	84	124	76	91
ATGTCCCCAGATATTA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTTGCGGGTGGGA	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGTTTAATCTCGC	ref_2028_upstream	38	20	64	52	14	63	26	40	20	44
CACTGGTTGCGCAGTT	ref_2028_upstream	27	16	38	31	13	26	24	22	18	39
ACCGTCAAATTTTCAG	ref_2028_upstream	181	89	230	190	83	170	97	196	113	158
CCTCATGCTACTAAGA	ref_2028_upstream	7	5	12	6	2	7	0	15	11	4
CTATTGACAACGTTGG	ref_2028_upstream	30	14	41	40	18	40	12	25	16	28
ATTCTCTTGCGTACTG	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
TCAGAACATCCGCCGT	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTTACGTAATAGT	ref_2028_upstream	64	43	84	65	28	55	49	45	49	69
GCGTGTTCGCCTCTTG	ref_2028_upstream	6	6	22	6	6	15	8	15	13	14
CCATAATTGTGTAGTA	ref_2028_upstream	29	14	27	22	21	28	11	18	22	32
AACTCCATAGGTGTTT	ref_2028_upstream	124	73	152	177	71	143	56	137	86	114
GCAAGTTTATGGTCTT	ref_2028_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCTCTGGCTCTGT	ref_2028_upstream	61	28	65	61	36	55	31	50	42	75
CTTTGGTCAAGTTTAA	ref_2028_upstream	334	160	448	348	197	313	155	340	189	346
GACTTCTGGGTGTCCT	alt_5911_new	5	4	4	5	2	3	9	6	11	4
TATTCAGTTAGGTCTG	alt_5911_new	17	27	18	17	20	18	25	13	24	6
ATGCGTTCCTCCTATG	alt_5911_new	15	21	18	9	22	6	20	7	20	5
TCGCGCTCCTATCTTC	alt_5911_new	0	0	0	0	0	0	0	0	0	0
TGGTCTTAGCGTCGAA	alt_5911_new	14	22	21	17	11	13	26	10	17	9
GTCTTCACGCACCTGG	alt_5911_new	8	8	11	10	12	9	8	10	25	8
CTGATGCTTGGCAGGA	alt_5911_new	39	77	53	44	61	29	86	33	80	35
GGTACCGTGCTCTTTC	alt_5911_new	0	0	0	0	0	0	0	0	0	0
CAAGTGCTGTGCAACG	alt_5911_new	0	0	0	0	0	0	0	0	0	0
TCTGAATCCAGTCTGA	alt_5911_new	0	0	0	0	0	0	0	0	0	0
CTCCCTTGGCCCGTCA	alt_5911_new	26	52	26	24	44	21	34	17	55	19
ATACCTGTTCTTGTTT	ref_5911_new	53	90	87	58	95	65	97	36	106	67
GATATTCACGTCATGT	alt_5911_new	41	68	74	41	70	57	66	46	68	64
CCGTCTAATTAAATGC	alt_5911_new	2	15	3	1	35	3	25	5	44	2
GGATGGCCAATCGTCC	alt_5911_new	19	54	27	26	50	21	50	24	37	29
GCTGCTTATCTTACAT	alt_5911_new	0	0	0	0	0	0	0	0	0	0
TGCGTGTACGAAATGG	alt_5911_new	2	4	0	1	2	0	3	0	1	2
TACATCCTTTTTCGTT	alt_5911_new	23	25	40	22	49	36	28	27	45	15
TCTGCCCATGTGTACC	alt_5911_new	10	20	5	11	10	9	15	9	17	8
CTTAAATAGTACATCG	alt_5911_new	41	66	47	38	79	25	71	43	72	32
TCGTAGTGACCCGAAA	alt_5911_new	0	0	0	0	0	0	0	0	0	0
CGTAGATCTTGGTGCA	alt_5911_new	8	17	8	10	15	8	26	13	20	4
GTCAATCGCCCCACTT	ref_5911_new	20	26	14	9	13	12	27	7	14	21
TTTCCGGCAGTACCAT	ref_5911_new	40	57	50	34	66	32	64	49	58	43
GTGTGGTGAGTGTTTC	alt_5943_new	39	72	60	45	71	38	78	42	78	40
GAAGAGTCGCTTTCTA	alt_5911_new	16	21	12	19	17	18	18	12	23	17
GGGTGTAAATCTAAGG	alt_5911_new	0	0	0	0	0	0	0	0	0	0
CTGATGGATAGATGGC	alt_5911_new	3	9	1	1	5	6	2	0	3	4
ACTTAGTGTCGCCCGG	alt_5911_new	3	12	6	2	5	7	4	1	7	3
AGCTCACCCGTACAGA	alt_5911_new	0	0	0	0	0	0	0	0	0	0
TCCTGGTCGTTTTTCG	alt_5911_new	6	9	6	8	11	8	13	9	15	9
ACCGAGATGGGCCGCA	alt_5911_new	0	0	0	0	0	0	0	0	0	0
ACTAACCGGGCAGATC	alt_5911_new	8	17	11	10	17	18	22	12	19	9
ATTAGTAAGCTCCCGT	alt_5911_new	28	66	27	17	55	22	75	20	59	13
GGTTCTAATTGGGAGA	ref_5911_new	6	12	5	9	3	5	10	1	9	5
GGTGCTTCGTGGAGCC	alt_5911_new	11	15	6	3	8	14	13	7	13	7
GGTCCTTGTAAGTACG	alt_5911_new	44	46	39	34	54	40	52	28	56	41
TTTTGTTGTACTCCTC	alt_5911_new	0	18	4	1	19	6	13	1	25	5
CAATCTCGCTTTCTTC	alt_5911_new	177	208	210	159	187	170	217	149	209	138
GAACCCCGCGTCTATG	alt_5911_new	0	0	0	0	3	0	0	0	1	0
TTCGATCTCGGCCGCG	alt_5911_new	4	4	16	2	5	10	9	4	11	4
TTCAGTGTGTATAGTG	alt_5911_new	29	26	23	26	35	14	37	10	39	16
GTGGTAGTAGATTAAA	alt_5911_new	0	0	0	0	0	0	0	0	0	0
GTTCACGTGACCCTTT	alt_5911_new	58	84	79	69	94	71	70	60	97	66
TTATTCATCTTAAGTT	alt_5911_new	28	34	29	26	37	27	53	28	35	26
CTGGTCGCATTTACAA	alt_5911_new	15	18	16	20	18	9	13	13	22	10
ACGGCCTGGCATCTAC	alt_5911_new	89	104	68	68	123	58	115	69	131	70
CGAATATGTCACTTCC	alt_5911_new	10	19	19	11	24	10	22	18	21	13
ATACCTTGATGCTACT	alt_5911_new	79	89	83	58	79	68	74	37	128	67
TTTACCTAGCTTTTTG	alt_5911_new	0	0	0	0	0	0	0	0	0	0
CTCTTCACGTGGCACC	alt_5911_new	23	28	34	27	20	30	31	17	31	25
CTTTGTGTAAAGATGA	alt_5911_new	36	53	26	41	55	23	49	38	58	36
GCGAAATACCGCAAGG	alt_5911_new	0	0	0	0	0	0	0	0	0	0
AAGCCTTTTATACGAC	alt_5911_new	26	25	19	10	37	11	22	8	44	10
AGACAAGTATGTCCGC	alt_5911_new	0	0	0	0	0	0	0	0	0	0
CAGTGAGTATGCCACA	alt_5911_new	14	35	32	20	41	22	32	23	52	23
GTCTAATGATAACATG	alt_5911_new	21	41	22	29	35	19	32	20	38	23
ATTTTGTGTGATCCTC	alt_5911_new	0	0	0	0	0	0	0	0	0	0
ATAATGCGTCTATTGT	alt_5911_new	14	38	36	12	30	24	35	11	36	19
TTTTTGTGTGATCCTC	alt_5911_new	0	0	0	0	0	0	0	0	0	0
CTGTGATCAGTCTTTA	alt_5911_new	18	14	11	14	10	14	17	10	20	11
CTGCATGATCGGGTGC	alt_3426_fdr	42	4	44	25	10	32	7	41	13	29
GACAAGCTTTGCTATT	alt_3426_fdr	168	43	198	179	33	157	39	170	45	138
ATAGTGATCGCAAATC	alt_3426_fdr	73	27	87	77	19	73	21	65	25	55
CTTCTGTGTATCTGGT	alt_3426_fdr	22	0	24	15	7	19	3	19	3	13
ATACAGTTATTCAATA	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCATTCATGCATT	alt_3426_fdr	113	28	127	129	33	112	26	129	30	111
AACAGCTTTATCGCCC	alt_3426_fdr	425	185	626	576	188	452	181	542	220	433
GTCCTCAGACTTCAAT	alt_3426_fdr	131	29	148	112	31	123	22	110	29	127
ACACGCGCATCACGTT	alt_3426_fdr	127	31	170	143	46	120	42	107	30	119
ATTTACATACCTTTGC	alt_3426_fdr	58	23	81	58	25	57	35	47	36	46
TCAGATTGGACTAGGA	alt_3426_fdr	699	189	1000	898	224	815	257	824	216	669
GTCTCTGTATACACCG	alt_3426_fdr	142	47	158	150	37	156	45	138	45	118
GGTCAGAGGACGCACC	alt_3426_fdr	40	7	27	36	9	32	7	34	7	26
GCGTAACTTATGTCTC	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGCATATGGACCG	alt_3426_fdr	130	31	199	146	36	148	35	129	49	111
GAGAGAAAGGTTTTTA	alt_3426_fdr	132	34	149	143	35	132	43	121	37	128
CAGGTAATTTTTTAAC	alt_3426_fdr	30	4	41	40	7	32	4	43	7	21
TAACGCTACCCCAGGC	alt_3426_fdr	7	6	11	8	8	14	8	12	6	3
GCGCGGTCGTCATCAC	alt_3426_fdr	66	14	113	90	14	57	17	66	18	56
TATGAGCGCGCATCGG	alt_3426_fdr	53	19	70	64	11	55	15	49	9	46
GGAAGGGGCTCCTCGC	alt_3426_fdr	137	47	187	143	43	100	32	116	45	93
GCCGGACACTCGTTCT	ref_3426_fdr	1485	369	1822	1666	420	1466	421	1387	464	1305
AAATTTTCCCAATGTA	alt_3426_fdr	1082	256	1311	1149	241	1044	269	1061	268	888
TCCCTTAGAAGTGCCA	ref_3426_fdr	222	34	272	250	52	217	51	229	51	190
TCCCAAGAAGTGTGTT	alt_3426_fdr	291	83	380	326	67	286	80	296	81	280
TTTGACGTTGGCTTGT	alt_3426_fdr	112	41	160	119	31	92	40	74	42	97
CCGCTTGGTCGACTAT	alt_3426_fdr	35	27	46	62	35	43	39	29	49	52
GGTTTAAATCGTTACG	alt_3426_fdr	12	2	16	9	2	5	4	7	5	7
ACTTCACACGTTGAGT	alt_3426_fdr	133	44	145	129	49	118	37	147	35	136
TTGAGTTCATGTCTGC	alt_3426_fdr	53	22	71	49	10	62	17	68	20	59
ATTTGCAAATAGCGCC	alt_3426_fdr	146	34	183	167	36	166	39	163	42	129
TTATGCCCAAAGGAGA	alt_3426_fdr	316	107	433	337	83	340	101	264	114	264
GACCGGGTTTTAGGGA	alt_3426_fdr	127	25	171	131	26	130	47	103	49	101
TACGTGTGCACAATTT	alt_3426_fdr	49	10	61	37	14	49	9	46	23	58
GAGGAATCTACCACCA	alt_3426_fdr	511	137	672	612	113	596	148	546	153	538
TTTTGACCAAAGCACT	alt_3426_fdr	73	21	79	102	19	60	20	66	12	74
TCACACACCGGATAAT	ref_3426_fdr	75	29	121	108	36	104	26	109	32	108
AAAATTGTTTAGTTTA	alt_3426_fdr	185	54	282	206	43	223	44	192	50	223
GCCCCTGAGCAATTAA	alt_3426_fdr	13	2	14	7	0	15	1	10	0	8
GACCATGCAACGACCT	alt_3426_fdr	46	7	73	68	20	63	19	46	12	49
CGGAAGTTCCCATCAC	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCGGCAGCTATAC	alt_3426_fdr	158	89	157	147	87	112	94	129	86	121
TCGATTTATCCACCTC	ref_3426_fdr	222	41	260	213	34	200	38	231	47	210
GCTTCGACTTTGTGCT	alt_3426_fdr	92	16	92	87	28	75	23	54	37	68
CGCTATCGCCAGGACG	alt_3426_fdr	2230	559	2516	2258	566	2063	578	1963	639	1897
AGTAGCAGGAATTGCC	alt_3426_fdr	39	7	54	36	17	41	12	47	15	26
AACACTTTTCTTGGCC	alt_3426_fdr	280	73	355	342	78	295	80	302	83	255
CCCTTTACGTTGTTCG	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
CTACCTTAGCTGTAGT	alt_3426_fdr	63	24	74	94	14	89	21	64	22	63
CAATGACTTAGTGCCA	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGCTTGAGCTCT	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TATATAACGTTTTGCA	ref_3426_fdr	359	69	455	378	67	316	81	356	65	273
CGCTAAATCGCTTCGG	alt_3426_fdr	282	96	390	360	124	259	122	291	117	237
TGTATATTTCCTCTTC	alt_3426_fdr	33	3	49	37	3	39	12	29	6	31
TAATTTGCTAGACGCA	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGCAATGATTTG	alt_3426_fdr	45	13	63	52	12	52	20	56	17	56
ATTGCGTTGGAGCCAT	alt_3426_fdr	112	31	169	171	45	135	43	117	45	137
TATTTAGTTTTGGGAT	ref_3426_fdr	3036	692	3979	3380	674	3275	683	3140	681	2829
ATAGCCTAGTCTTTTG	alt_3426_fdr	124	33	167	150	42	143	38	125	43	125
ACTTGCAAGGTTGAAC	alt_3426_fdr	86	34	85	69	33	81	36	77	33	65
ACGTGCACTCGGCACC	alt_3426_fdr	264	44	262	269	66	199	65	230	75	200
CATGATTTTCACTGCA	alt_3426_fdr	339	98	412	394	89	317	93	305	96	318
TGGTTCTTTTTTGCGT	alt_3426_fdr	298	91	366	297	88	274	108	260	89	251
TGCTAGGGCACACTCC	alt_3426_fdr	0	2	1	1	3	0	0	0	1	1
GCCTTAACACGTCTCG	alt_3426_fdr	181	63	227	192	49	181	74	159	69	189
GTGATACAGGACCGAG	alt_3426_fdr	69	19	94	71	26	69	20	70	19	62
TTGGATCGCGAGCAAT	alt_3426_fdr	276	81	348	285	56	297	85	248	87	277
ACTTTGATAAGGATCG	alt_3426_fdr	62	18	102	80	19	68	17	71	12	51
AATCAAAACACTCTGA	alt_3426_fdr	88	12	90	109	24	68	14	69	24	72
TGGGATGGGCAGTTCA	alt_3426_fdr	140	38	174	146	27	144	43	126	38	116
GTGTTGAAGTCGGCGG	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTCAGGTCCTGCT	alt_3426_fdr	147	44	197	142	38	146	41	122	30	155
TTTCGCCAATGCAAGC	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
AAAGCCATATAGGAAT	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAGTGAGCCACGC	alt_3426_fdr	167	37	206	177	40	163	47	151	56	152
ATATAACGTAGCATAT	ref_3426_fdr	101	20	147	107	23	88	19	100	28	75
CCCGATAGTTCGATTC	alt_3426_fdr	515	130	651	553	133	458	136	434	151	423
TCGGCGCGTTAGAGGT	alt_3426_fdr	202	71	255	232	76	194	67	198	70	193
AAACTTCCGGAGCCTT	alt_3426_fdr	52	19	68	74	16	51	17	53	11	48
TGTGATTGAATATTTC	alt_3426_fdr	54	16	63	58	10	48	21	65	14	36
TTTTTGTACTTTTCCG	alt_3426_fdr	70	17	91	73	17	59	20	66	20	61
CGCACGGTAAGCGACA	alt_3426_fdr	235	74	319	265	59	241	60	278	54	230
ACGGTACTTATTCCAT	alt_3426_fdr	114	26	135	108	23	114	25	101	26	80
GGCCGCATGACTCACC	alt_3426_fdr	56	31	74	75	40	49	38	47	50	39
GGCGGCTAATGTTTTG	alt_3426_fdr	101	29	132	103	32	79	28	100	29	84
CTTCACCATCAGATCA	ref_3426_fdr	155	74	223	184	57	167	76	178	79	154
GTTCATGATCTCGATA	alt_3426_fdr	131	27	186	172	42	129	44	141	30	114
CGTGGATTGTTAGAGA	alt_3426_fdr	519	137	705	609	160	516	140	529	182	449
TGGACCCTACAGATTT	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGTTGCTCCACTT	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
AGGAGTGGTAAGCCTC	alt_3426_fdr	8	0	15	7	1	4	5	12	1	3
TCCCGCTACTGCACTA	alt_3426_fdr	4	3	11	14	5	9	1	3	2	4
CCGGTCCATGGAACGG	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTTTTATAACTTT	alt_3426_fdr	15	0	16	10	10	8	1	4	3	9
ATTAACCTAGAAGCTG	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGTCTCAGGTTCT	alt_3426_fdr	115	33	137	115	30	94	35	72	26	91
TCTTCATAATAGGCTA	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTGAATATAATT	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAAGGAATTGCTT	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTTCGATAATCTT	alt_3426_fdr	460	98	579	487	128	437	135	467	140	414
GGTGACTGCCAATTTC	alt_3426_fdr	85	21	106	71	17	61	21	69	16	60
CCTTCATTGGAATTTA	alt_3426_fdr	484	136	618	530	135	467	112	506	154	466
CTCTGGAAATTTATGG	ref_3426_fdr	51	23	49	53	18	50	10	52	18	41
TCATTCGTTTCCGCTA	alt_3426_fdr	90	19	118	90	30	77	20	85	26	80
GCTTAACAAGAGCGGG	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTCCAACAAGCCC	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGTTAGTTTCGAA	alt_3426_fdr	215	65	261	231	55	217	60	183	63	192
TTTGGCGAAGTTGCAC	alt_3426_fdr	8	7	17	7	4	14	4	11	2	9
TAGGGTCAGATATCTA	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGTTCTGCTAAAC	alt_3426_fdr	191	62	236	240	59	174	44	181	59	190
CCCCCTATGATCACCT	alt_3426_fdr	109	23	130	124	32	117	27	112	32	106
GGTTAACCATCAACTT	alt_3426_fdr	11	3	14	27	1	15	5	12	2	10
GGTCACGTAAGGGGGT	alt_3426_fdr	87	29	89	77	28	66	37	60	28	102
CTTCGTCGTCTTAGTT	alt_3426_fdr	23	6	34	36	8	18	4	19	2	26
GATGGAACGCAACCGG	alt_3426_fdr	139	30	165	148	42	158	39	130	42	121
AGGGAATGATCAGTGC	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGCCATTACTTCTAGT	alt_3426_fdr	54	9	66	58	18	45	24	57	16	45
TGGGAAGCTGCTCACC	alt_3426_fdr	88	15	109	92	20	76	19	98	10	79
GTTCTTTTTTCTTAGG	alt_3426_fdr	134	50	183	139	41	130	50	132	28	119
TAAAACCAGCCACTTG	ref_3426_fdr	202	46	262	206	52	204	45	253	47	190
ACTGCCTGTGTGTCTC	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCTGGTTTTGTCT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGATGTTCCTCG	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTAACCTTCTGG	alt_3426_fdr	51	16	48	59	11	48	15	41	16	30
ACTTGATTGTTACTCA	ref_3426_fdr	212	96	304	278	74	236	101	241	104	232
GGCAGGTTTTGTGTAG	alt_3426_fdr	142	30	121	112	47	119	40	112	40	111
GACTTACCGTGCGTAA	alt_3426_fdr	13	25	21	9	21	19	17	16	25	14
TGTTTTCCCATCAAGT	alt_3426_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTGGTGCAATTTT	alt_3426_fdr	41	12	60	56	21	53	13	57	12	44
GATAATTCGTGTGGTT	ref_6023_new	15	12	13	12	7	11	6	19	7	15
ATAATCTTAATTTGCT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GTTGCAGCCTACTTGT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TATATCAGCGTATTGT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TCACGGGTTCATTGTT	ref_6023_new	28	14	35	34	13	22	18	29	24	32
TGGGCTCTGATCCGTA	ref_6023_new	18	2	25	21	8	15	18	20	12	15
CGGCGTGGATAAAATT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
AACAAGGTGGAGTTTT	ref_6023_new	40	33	43	50	35	50	39	38	20	40
ATATATCTTTCTTTTA	ref_6023_new	97	46	104	113	42	92	58	92	46	104
AGTCCAATCTTATTTA	ref_6023_new	32	39	47	35	23	32	35	27	38	29
TTCGAAACCTAGGAAT	ref_6023_new	53	52	76	60	50	65	64	50	72	55
CTTGCTTAGGGTTGGT	ref_6023_new	5	8	15	3	9	12	9	9	8	10
TCATTCAGCGGGCACG	ref_6023_new	18	11	24	20	10	17	17	17	13	24
TCTGCTTCGGAATTAC	ref_6023_new	11	12	20	7	10	13	11	13	12	17
TCCGCGAGCTACTCCT	ref_6023_new	25	17	34	20	21	23	23	31	19	32
ACCGCGGTCTTTCAAC	ref_6023_new	41	62	57	38	41	41	41	33	62	27
GACTATGCCCGACGTA	ref_6023_new	56	40	53	50	35	48	40	53	57	30
ACCAACTTATCCCGCC	ref_6023_new	44	29	53	31	30	29	29	33	38	31
GTCCTCGTGTTTCGAA	ref_6023_new	19	14	33	29	19	18	15	15	20	17
GCTTAGTTACATAATG	ref_6023_new	12	12	32	28	27	9	17	12	29	17
TAATGGGAGGGCACAG	ref_6023_new	8	3	7	10	11	9	9	5	3	8
TGTAATAGTTTGTTAG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GTGCTTATATGCCCAC	ref_6023_new	108	78	138	114	108	99	109	118	106	97
ATTGACTGGATTCACT	ref_6023_new	18	11	23	13	10	12	13	6	10	19
GGGATAGGCGTCCTCT	ref_6023_new	26	33	54	36	40	37	37	34	26	40
CGTTGCTGGCTAGGCC	ref_6023_new	111	87	149	117	91	111	87	110	67	100
GGATGTTCGTTAGTGC	ref_6023_new	17	16	15	12	19	14	19	13	14	10
GTGGACTAATTAGGAC	ref_6023_new	23	15	23	15	15	17	13	14	5	23
TCCTATCACCATGGCG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
AGATTTCCGCTCCGCC	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TCAGGAGCTCGGGCAT	ref_6023_new	44	34	59	54	40	38	38	46	56	46
ATCGTTTGATCCACCT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TGTATATATCTGGGAG	ref_6023_new	6	6	5	8	3	9	1	6	9	3
CCCCAGTGTGACGATG	ref_6023_new	20	17	18	9	19	19	23	22	14	12
GTGACTCCCAACCCAC	ref_6023_new	1	2	4	7	4	2	1	1	1	0
AGCGGTTTTCTCCTGA	ref_6023_new	3	6	3	1	3	1	0	6	2	2
TAAACGGTTTCCAGTT	ref_6023_new	40	21	44	36	20	29	28	23	28	34
GGCGATTTACCACATT	ref_6023_new	15	7	14	8	9	11	11	9	6	5
TGTAGATGTGTATAAA	ref_6023_new	56	38	73	62	47	79	53	39	39	38
CTCGTCTTTCCGTCGT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TGTTTATTAGATATTG	ref_6023_new	70	70	83	76	50	72	51	56	65	53
CTTGTGTACCCACGCA	ref_6023_new	57	45	66	46	41	41	44	44	46	43
GAATATAGGCTCGCTG	ref_6023_new	30	9	51	35	23	27	28	30	26	26
AACGACTTTCGCCAGC	ref_6023_new	0	0	0	0	0	0	0	0	0	0
ATTATCACCAGAGACC	ref_6023_new	14	13	26	24	7	19	18	11	10	18
CGTCGGTATTCTAACA	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TTGGTTCAAGTTACGC	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GTTCTTCCGTTCATAC	ref_6023_new	42	25	40	43	32	35	26	31	27	35
ATTGGACAACATGTCT	ref_6023_new	51	25	48	42	35	55	39	39	40	40
TAACTTGTCTAAGCCA	ref_6023_new	182	102	205	162	140	150	111	178	112	130
CATTGGGATTCTTTTG	ref_6023_new	145	96	180	165	90	141	81	162	86	129
GGTTGCGGGTTCCTCC	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GGATATGGCGCTCCAG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TAGGTCACTCCAGGTT	ref_6023_new	33	21	28	20	18	17	27	21	25	20
CTTCACTCACAGTTAT	ref_6023_new	5	5	6	7	6	4	3	0	2	7
CGACACTGGCGTGTTT	ref_6023_new	26	14	30	24	9	26	17	28	21	26
GCATAATTCCTGAGGG	ref_6023_new	68	48	75	70	45	67	43	55	54	47
CCCCAGGGCAGCCGGT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TGCATTCTTGTGCGAG	ref_6023_new	9	7	15	10	7	7	5	6	11	12
TACGCTTGAAGATGCT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GTATAGTTTCTTTCGG	ref_6023_new	58	35	52	65	35	48	33	48	40	44
CTGTAACATTCGTTAG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GAATAGCGCCGTTTTC	ref_6023_new	94	54	84	82	40	80	59	63	45	62
TTGTATCTAAATGTTG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
CTATCTCGTTATCCCT	ref_6023_new	59	46	73	80	56	66	55	66	59	62
GTTATGTTACACAGCC	ref_6023_new	58	26	73	37	40	54	35	43	34	51
TGCATCCACTTTTTCC	ref_6023_new	68	65	84	75	59	66	71	60	66	69
AGCGGCTCAGCTACAG	ref_6023_new	34	15	27	36	22	33	21	33	22	26
TGTCCTTTACTGAGGC	ref_6023_new	16	22	12	13	29	9	30	13	25	16
TCCACTTGGCTTCGAG	ref_6023_new	30	23	26	24	30	15	24	30	24	26
GCTGACGCTATCTGCT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
CCAAGGGGGATTCCTG	ref_6023_new	26	20	24	24	10	16	15	14	14	21
TCTGGTCTTGACTCTT	ref_6023_new	0	7	1	4	1	8	5	4	1	1
CGCGCCTGGTATTCTC	ref_6023_new	10	19	19	7	17	17	14	10	20	10
CATTTCACGGGTCTGT	ref_6023_new	22	12	26	15	12	8	15	10	20	14
CAAAGACATGGCACTA	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TTGCTAAATGGATTGT	ref_6023_new	75	69	78	76	55	85	58	84	78	77
CAGTGTCGTCCTTTAA	ref_6023_new	46	50	43	38	32	43	50	33	53	30
CTAATTTTCCATTATA	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GGCTCGACCTCCTCCT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GGGCCTTTACTATCTA	ref_6023_new	28	34	40	44	31	29	19	33	43	31
GCGTTACTCACTATTG	ref_6023_new	53	19	60	48	41	42	39	45	35	28
ATCAAGACTGCAGGGC	ref_6023_new	33	38	46	32	29	33	28	37	31	33
TAGCCTTCTTGGCTCC	ref_6023_new	35	16	38	34	32	21	28	29	26	23
CTCTGGATACGAACAG	ref_6023_new	34	22	29	24	21	35	12	21	23	19
TACCCGGCCAGATCGA	ref_6023_new	32	54	55	50	42	54	50	37	69	37
TTTGTCTTGACGACTT	ref_6023_new	56	42	69	62	40	52	51	44	52	34
GGTCTGTATCGTCGGA	ref_6023_new	0	0	0	0	0	0	0	0	0	0
ATGCACGACCTGAGTG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
CGTCCTGCATCTATAG	ref_6023_new	41	42	45	48	41	40	43	49	46	35
GAGGACAGGTGTTTAG	ref_6023_new	12	8	9	14	13	16	10	13	11	6
AAAGTCCTCACCGTAA	ref_6023_new	72	48	93	90	60	74	42	61	60	71
TGTAATCCGCAGGGGG	ref_6023_new	57	35	46	59	47	40	29	51	41	54
TTTAGGGCAAGGCTCT	ref_6023_new	22	14	13	21	14	19	18	12	15	14
ATGTTCGACAGCGCTC	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TAATATCGCGGGCCGT	ref_6023_new	93	57	122	98	70	100	71	110	88	80
GGCTCCAACGTGCTAG	ref_6023_new	6	17	8	4	7	4	11	9	7	11
GTTTCTGACATCAGAT	ref_6023_new	7	8	6	3	4	5	9	3	2	1
GACACCGGGCTTCGTA	ref_6023_new	4	7	0	4	11	2	4	1	9	3
GAAGCCTTATAGTTGT	ref_6023_new	35	32	71	51	30	48	36	37	43	34
TACGCTGGCTCGGGAG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
AGTTACTTGCGCTTCG	ref_6023_new	3	5	5	10	3	4	3	2	5	6
GGTTGCGGGTTCCTCT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GAAACGACCCCGCTTT	ref_6023_new	53	37	81	55	31	46	30	40	30	46
TTAAACGCTCGGGGTG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
CTTTGCTCCAAGCCAC	ref_6023_new	8	17	12	13	12	16	9	12	14	17
GACGGGCAGCGAAAAA	ref_6023_new	21	14	20	35	22	16	16	23	14	13
ATCTTGGAGCGTGCAC	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TTGGGCATACCAGTAT	ref_6023_new	43	34	50	45	38	32	52	40	34	30
CGCACCAATGCAGCCA	ref_6023_new	1	0	1	0	1	2	0	0	0	1
ATTAAATACTGGCTCC	ref_6023_new	36	25	40	27	31	35	32	35	28	35
CTTACTAAAGTTACCA	ref_6023_new	33	14	28	27	30	28	34	24	32	15
TATATCACTTGGAGAG	ref_6023_new	66	37	103	63	40	55	53	67	42	56
CACATGCATCCATGTT	ref_6023_new	13	9	16	20	14	13	14	23	8	6
CTCGTAGGAAGACTCT	ref_6023_new	2	3	4	6	8	4	8	5	9	4
TGTTCTCGTCTCGATA	ref_6023_new	38	38	57	43	23	44	33	22	35	31
AAGTACTTCGCCAGCA	ref_6023_new	20	21	33	36	25	26	24	24	20	25
CGTATATGGGGTGATT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GTAACTAACCCCTATC	ref_6023_new	9	16	11	9	19	5	12	10	13	7
ATACCCCTCCCCGCCT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
AAGAGACCTAAGACCT	ref_6023_new	58	56	66	46	41	63	36	48	47	60
AGGCTGCTCCCTAGCG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GAGTGGCTTTACTTAG	ref_6023_new	111	104	140	112	83	137	115	111	101	101
CGTATAATCTAGGAGA	ref_6023_new	0	0	0	0	0	0	0	0	0	0
CTTCAATTCAAGCATT	ref_6023_new	5	3	10	8	5	11	13	10	6	5
TAGTTGTCATATTAAA	ref_6023_new	0	0	0	0	0	0	0	0	0	0
ATCCACCTATGCTAGG	ref_6023_new	14	9	16	12	10	15	15	5	12	16
AGCAGCCCAATGTGAA	ref_6023_new	26	18	27	23	19	22	25	29	24	23
TGGCGGTACTTAATGT	ref_6023_new	5	5	4	5	3	6	3	4	2	5
GGTACCTTGTGTAATG	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TTATAGCGTTGTTTTG	ref_6023_new	63	42	71	59	53	50	57	63	38	54
AAGTTTCCTCAGCTTG	ref_6023_new	134	80	187	115	113	120	98	131	100	122
TATCTTACATTTTCGT	ref_6023_new	192	133	224	209	110	161	107	176	116	144
GAGTCCCCTGTTCGGA	ref_6106_new	204	149	246	234	164	179	141	206	158	186
TATACTCTTATCTAAA	ref_6023_new	7	4	10	11	16	15	5	15	12	6
ATCCCAAGACGTCTAT	ref_6023_new	19	32	31	29	36	26	31	30	44	19
CGGTGGGACCTACCCA	ref_6023_new	34	28	58	47	30	26	45	37	23	26
ATGCCACGACCTAACT	ref_6023_new	34	18	28	40	19	40	27	24	24	33
ATCGGGTCCCGCATAG	ref_6023_new	127	88	157	126	86	107	88	95	124	123
TTCTTACCGAACTTCC	ref_6023_new	6	7	7	10	11	6	12	10	10	12
ACGTTACCGGTTTAGC	ref_6023_new	21	23	15	30	21	27	13	13	19	15
GACGCCGTGTTTCTGA	ref_6023_new	23	14	30	31	16	17	24	17	14	17
CCGGGTCTTTCCCCTG	ref_6023_new	7	14	12	10	12	7	10	6	13	18
CGGGCGGTATGTCTTT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TCTTTAAGAGCCTGTT	ref_6023_new	77	57	118	80	65	72	82	79	60	62
GGGGCGTTCCAGCGGG	ref_6023_new	27	19	36	33	26	24	26	21	18	30
TCATTGCCATGGTCTT	ref_6023_new	11	6	10	2	7	9	9	10	5	5
ACAGAGCAGGGACCTT	ref_6023_new	188	162	254	208	186	219	161	171	181	164
AATTCGTCAGTATGTC	ref_6106_new	85	47	104	91	41	77	42	69	55	64
ACGAGTTTCTAGCTTC	ref_6023_new	0	0	0	0	0	0	0	0	0	0
GGGTTTTGTTGTTTTA	ref_6023_new	6	3	4	5	4	6	2	10	2	4
CCTCCGACTTCTCTAT	ref_6023_new	0	0	0	0	0	0	0	0	0	0
TTCTAGGAGAGTTAGA	ref_6023_new	53	61	53	60	66	48	75	61	70	43
GTTCGTCACCTGCCAC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TGCTGTACAATCGTTC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TCAAGCATAGCTTATG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GATAGTTCCTCGCTTC	alt_5857_new	41	29	30	22	31	48	22	42	26	29
GCGCACGTCCACCGTA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GGAAACCATTTATCAA	alt_5857_new	54	42	66	52	48	65	53	54	47	57
CCGTCTTGCGCATATG	alt_5857_new	6	8	5	3	12	5	16	2	14	8
TCTTCAAGTTCGGCGC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TCACTCCGTCATTCAT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TCTAACAAAGACCCAT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GGGTAATGGTTATCAG	alt_5857_new	30	31	55	35	32	32	31	29	37	40
TGTCTTTCCTCCTGCC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TATGTTGGGGAATTCT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TGGAGCGGGGGGGATG	alt_5857_new	45	31	29	34	30	45	29	33	35	29
CTCACCGAGGCGTGCG	alt_5857_new	68	70	99	65	60	66	66	71	74	59
TTCCCCCCGTAGCTTA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CTGAACCTCTTCTAGG	alt_5857_new	16	8	16	12	15	12	12	16	10	17
TTTTATTGATCCTCTG	alt_5857_new	5	6	11	15	3	5	8	6	9	7
ATATCGGCGCTCCTTT	alt_5857_new	53	36	52	65	42	59	44	47	39	43
CGCTCTTGTCGGAGGC	alt_5857_new	41	20	51	46	28	30	28	31	23	44
GCTCACCTGTAAGGTC	alt_5857_new	11	42	19	11	38	11	46	12	46	12
CGGTGTTTGCGTTTCT	alt_5857_new	11	12	24	25	9	19	9	13	9	17
TGTTCGAACTCGACTT	alt_5857_new	51	42	60	56	42	42	44	48	45	54
GCATTTTTGGTGGCTC	alt_5857_new	0	0	0	1	0	0	1	0	0	1
CGGGTAAAGGTTCTAG	alt_5857_new	48	46	67	40	53	37	34	44	32	25
CCGTGTAAACTGTGCC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GTTATCTTTTGTACAA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TACTGAACGATTACTT	alt_5857_new	13	7	14	4	6	13	14	19	10	10
TTTCTTTACAGCGAGT	alt_5857_new	6	8	4	3	5	4	12	6	10	4
CACCCGGCCAATTTCC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TCGTGTTACGCTGTTA	alt_5857_new	38	27	59	34	32	41	39	36	40	41
TCTCTTGAACTTCTAG	alt_5857_new	57	46	59	52	52	40	37	41	45	47
AGTATCGGGATAAGTT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TGCACACAGATTTAGC	alt_5857_new	19	20	39	25	14	29	9	25	21	24
GCTGACTCACAATTTA	alt_5857_new	19	5	17	19	13	14	11	9	8	10
TTTAATCATGTAGGAG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
AGCGCGACGGTACTAG	alt_5857_new	67	64	67	67	73	68	89	64	66	58
TCACCTGTCAAGCTGA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TTCGTCTAAGTTTTGC	alt_5857_new	18	12	11	14	9	17	15	10	19	23
CCTGATTAATTCACTC	alt_5857_new	227	188	276	223	194	194	205	198	184	184
CGTCCGTACTTCAACC	alt_5857_new	10	4	4	10	11	7	11	6	7	12
CACTTGGTGTCCTAAC	alt_5857_new	3	10	8	6	6	5	4	3	5	1
CTCACGTGTCAAACTT	alt_5857_new	9	4	25	19	9	8	3	20	11	10
AGGCTATGTGTTACCC	alt_5857_new	74	70	117	95	78	69	84	85	77	74
TGTAGGGTGCTTAGCG	alt_5857_new	128	129	189	153	128	132	126	126	152	145
TGGATTACCGAAGAAC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TCGTTCCACCTCGCTA	alt_5857_new	157	92	162	148	131	148	104	144	91	112
CTAGTCTGCCCCGTAA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GGTGATTGCATGTACG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
AATCTGGATACAAGTT	alt_5857_new	43	22	41	39	28	44	45	31	49	26
TCCGTCTTCCAGCGTT	alt_5857_new	32	30	37	26	20	36	25	23	20	35
CAAGTGCAGAGTTCCG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
AGAAATGGTTCTCCCT	alt_5857_new	42	41	55	49	59	47	31	41	45	43
TTGGTCGCATGCATGG	alt_5857_new	115	73	128	102	81	84	89	90	98	89
GGGCAAAATTTATATA	alt_5857_new	40	26	39	40	32	33	30	37	26	30
GGACTGAATGCTATGA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CGATTGTGCACTTCTT	alt_5857_new	3	2	5	2	5	1	3	3	6	1
GTCAGGAATCCCAAAG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
ACTTGGTATAAACATC	alt_5857_new	2	3	4	1	1	2	2	5	1	8
ATGTTCTACGTCCCGA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CCCAGAAGTTGAACGG	alt_5857_new	2	6	7	6	6	8	7	0	7	7
AAGGGGTCTCAGCAGT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GGTATCGCTTCACGTT	alt_5857_new	196	127	207	202	87	155	122	164	151	177
TGATAGGTGTTAATTC	alt_5857_new	9	7	16	10	7	11	9	5	14	9
TGCCCCCTCCGCATGT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
AACATCCCACAGTTAT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
ACGCCGCTTAGGCTAC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
ATTAAGTGCTACCGTG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TTAGTACTTTCACATT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CAGTCATGGTTTCTTC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CCTTCTTAAATGTAAG	alt_5857_new	0	2	0	1	0	1	0	2	0	2
CCTTTTTCTGGGCACA	alt_5857_new	15	10	17	22	9	16	20	17	16	13
CACCCTACAAGGGTGC	alt_5857_new	30	23	46	43	29	30	43	32	27	29
TTCACGTTTCCCCCAG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GCGTGTTGTATATTAT	alt_5857_new	46	58	67	52	46	50	47	52	59	51
CATTCCAATGTTCGGG	alt_5857_new	108	94	143	111	107	121	97	114	105	95
GACTTTCACAGAATGT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
GGTCAGCCTTCCCGAT	alt_5857_new	13	23	25	21	28	20	26	15	24	14
AAGTTTGTACAACCTG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
AGTGACAGGGTGGGTT	alt_5857_new	39	33	41	37	28	39	40	35	32	41
GTGCACTGGTTCAGGT	alt_5857_new	14	17	24	23	19	22	19	17	20	11
ATGGACGTTTTTGTTT	alt_5857_new	17	10	25	10	13	9	6	18	5	18
GGTGACAGGGCGAAAT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TGAATGAGCGACATAG	alt_5857_new	109	99	134	103	84	90	77	54	103	87
TGGAGCCCTACCTGTG	alt_5857_new	7	1	9	3	2	5	4	2	3	6
TACGCCGGCTGTTTAG	alt_5857_new	37	25	23	27	35	26	27	16	36	23
GACCCAGCGCAGTAAC	alt_5857_new	114	88	135	126	105	88	104	119	112	115
GTAACCGCGTCACCTT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
ATATATGGTCCGCTGG	alt_5857_new	89	57	111	71	59	81	61	63	73	59
GGCGTGGCTTCGACAC	alt_5857_new	20	14	37	30	17	36	28	24	25	24
TGCATTGTGTTTAACT	alt_5857_new	24	17	21	24	13	17	22	19	27	16
ATTAGACGTTTATGGC	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CCAGGAGTCCATCCTT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
ACTATCTCTCACCACG	alt_5857_new	4	1	8	11	5	5	8	4	8	7
TGGCGCTTCATTACTT	alt_5857_new	39	30	49	44	46	45	42	34	35	60
TGCGCCTATTTACAGT	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CGGACTTGAAAGGACA	alt_5857_new	100	74	101	61	59	87	85	65	63	86
TTATAACCCTTGTTTG	alt_5857_new	0	0	0	0	0	0	0	0	0	0
TGTACTTTGAGGTGAA	alt_5857_new	0	0	0	0	0	0	0	0	0	0
CACACTCAGAATTAAA	alt_5857_new	70	56	56	65	55	57	50	61	55	51
AAGAGAGGCACTACAC	alt_5857_new	96	87	150	117	84	111	103	103	88	107
CTCGCATTTCAAAGAA	alt_5857_new	45	31	55	64	37	43	38	37	41	35
GCCGAGGGTGATTCCT	alt_5857_new	24	6	18	10	16	4	13	9	14	5
TGGGGTTCCTTGCTGT	alt_5857_new	0	0	3	2	0	0	3	1	0	2
GTGCTGGAGAGGCTCG	ref_4391_missing	17	26	15	17	25	9	29	12	29	15
TTGGCTTCCTTTGTTT	ref_4391_missing	10	8	14	6	14	10	25	8	7	9
AATTATATCCCTTTGA	ref_4391_missing	23	22	27	23	40	16	48	30	27	12
GAATTCCGTCTACGTG	ref_4391_missing	64	110	81	66	91	57	101	41	109	67
ATATTTGATAGTCCGC	ref_4391_missing	17	17	16	20	43	13	29	17	19	18
GAGAAACCTTACTTCG	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
TGTACAGTCGATCCCC	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
GGCTCATAACGGACCA	ref_4391_missing	17	31	8	11	23	13	38	19	36	20
GGTCGTCAACACATTT	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
TTCCTCCTGTGGACCA	ref_4391_missing	34	77	47	41	70	42	96	31	66	39
TAGCTCCTCCTTATGT	ref_4391_missing	17	29	13	8	22	7	25	6	21	13
TTGGTTGTAGAGTGAT	ref_4391_missing	7	33	5	7	21	14	36	8	29	12
ATCTTTATGTGCTTAA	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
AGCGGTGTCCGTATAA	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
CGCGGCCTAAGAAACA	ref_4391_missing	7	6	0	5	4	4	2	7	5	1
TTGTAAGAAACATCCC	ref_4391_missing	22	26	34	30	41	25	34	27	58	22
TTTGCTAATCATCGAC	ref_4391_missing	11	35	10	17	20	11	23	15	31	20
GTTTAATATGCTGTAT	alt_4391_missing	69	110	79	55	107	60	80	66	100	63
TACCATGCCGCGTCCG	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
TGCAAAGACTGCTTTC	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
CGTACAGATTGGTTGG	ref_4391_missing	6	17	13	13	15	8	18	7	10	10
CCCTGATACGCTTTAG	ref_4391_missing	16	37	33	16	25	10	37	24	39	9
AGTTTTATGGTGCGTC	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
GTTATGAAATACCCCC	ref_4391_missing	0	4	1	0	2	0	3	0	6	0
TTGCTTGTGTGGACAT	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
CTTTGAATGTTGCATG	ref_4391_missing	19	27	15	19	38	15	29	12	45	19
TCCCTGCTTAACATAT	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
AGGGCCGGGACTAGAG	ref_4391_missing	27	46	26	23	45	21	45	14	45	21
CGCCGCCGATCGTTCC	ref_4391_missing	4	8	5	3	7	2	11	2	4	3
CTATACTTAGGTGTGT	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
CGTAACCTTTAGACTG	ref_4391_missing	7	13	8	17	32	7	11	19	22	7
AAAGGGTTTTTATGGT	ref_4391_missing	44	102	62	80	99	58	98	48	88	50
ATATCGTCATCGCATT	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
GTGCATGTCCAATTCT	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
CAAACTCGTTTGTTGT	ref_4391_missing	7	28	12	12	23	17	32	15	26	13
AGGCATGAGCCCGTTG	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
TAGGAACGTTAGTACA	ref_4391_missing	4	13	11	2	11	1	9	1	16	4
TGGTGTTGCCGGAGAG	ref_4391_missing	9	8	5	7	13	4	9	5	13	4
CTGTGGCATAGCAGTA	ref_4391_missing	1	3	2	0	1	1	5	2	5	0
AAATTAAGTTAAATCG	ref_4391_missing	1	0	0	0	1	0	1	0	2	1
TCGTAGTAAGCATCGG	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
TCCTCTGACACCATTA	ref_4391_missing	0	0	0	0	0	0	0	0	0	0
AGTTGTCATCCAGGTC	ref_3640_upstream	12	10	13	21	15	12	9	10	11	19
TCTCTTTCTTACGGAA	alt_3640_upstream	57	69	83	59	65	58	51	48	69	42
CGATTTACTTACCGGC	ref_3640_upstream	46	80	76	57	58	59	66	40	66	38
GTTAGCTATCTTTATC	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
CGACTTTCATATTGGT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTCTATGCAACGA	ref_3640_upstream	17	12	17	19	9	14	7	14	7	14
GTGTGGGTTATCAACT	ref_3640_upstream	7	8	12	11	4	7	7	10	4	6
GCCATAGCTCATCAAT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGTATCATAGTA	ref_3640_upstream	23	14	28	38	29	38	22	28	22	25
TCACAATTAGTTAGTC	ref_3640_upstream	40	25	38	37	20	19	21	38	19	29
AGAATATGCTCTAAAA	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
CTGACGGCCTTTACGG	ref_3640_upstream	46	22	51	44	26	45	21	45	36	30
CATCTGAAGCGTTTTC	ref_3640_upstream	13	8	12	11	13	17	8	18	12	9
TACACATTATGTTATA	ref_3640_upstream	22	14	26	26	17	25	14	25	12	29
ATATGAAAGTTTTCCT	ref_3640_upstream	12	5	4	10	7	8	3	5	4	10
ACCTAAATCCATCGTT	ref_3640_upstream	46	49	62	73	44	66	59	66	49	43
CGGACAAAGAGTCTAG	ref_3640_upstream	12	11	28	17	10	13	10	15	9	13
AACCAAGCTCCTATCG	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
AGCGCATTGTCCTCGG	alt_3640_upstream	72	43	58	82	38	57	51	66	51	67
AGAGGCCTAAATCTAT	ref_3640_upstream	144	111	205	169	94	161	96	139	101	132
TCCTCGCACATTCGTC	ref_3640_upstream	15	5	14	11	8	9	6	9	13	11
AATTTCCTGTCTTCCG	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
CATCACAAGTCTCCTC	ref_3640_upstream	6	4	3	12	1	7	1	4	7	3
AGACTTGTGCATCAAG	ref_3640_upstream	353	179	441	438	225	338	229	348	207	324
CGCGATGGATTTTGTT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
CCTACCCTCGTGTATT	ref_3640_upstream	41	20	34	27	30	24	25	11	16	19
ACGGCACATTTCTAAA	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
AACTCTCCGAGCGATT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
GACCACGTATGTGGAT	ref_3640_upstream	106	62	100	117	76	101	70	85	73	94
TATCTAGAACAGCCGG	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAATTTCTACTTG	alt_3640_upstream	60	32	56	53	37	41	42	53	37	50
AACCAATTCACTCATC	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TATTAGGTTAGCATAG	ref_3640_upstream	34	19	22	13	16	28	11	20	23	25
TGTCTATTCGACCGGT	ref_3640_upstream	41	43	54	58	37	29	27	54	36	44
GACAAATTTCTCCTGT	ref_3640_upstream	68	47	75	72	54	99	39	75	41	62
AGGGCGATGGACGTGG	alt_3640_upstream	20	17	22	14	12	21	22	23	15	15
AACATGTATTAGATAG	ref_3640_upstream	37	24	44	55	19	38	19	32	16	32
CTGAGGCGTAGGCTCA	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAGCCAAATATTT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGTGGTCCATGTC	ref_3640_upstream	33	24	28	25	28	34	14	33	30	23
TGACCGTTCCTGACCC	ref_3640_upstream	74	45	99	87	27	73	35	74	36	78
ATCTAAGAGCCGTTGT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGAAATTTACTTA	ref_3640_upstream	56	40	56	56	32	47	51	51	28	50
ATGTGATTATAATTAG	ref_3640_upstream	79	38	86	69	24	61	44	79	49	58
GTGAGGCTGCCCCCCA	ref_3640_upstream	92	48	102	82	36	79	50	88	44	77
AGTGGTTCTTCCCGTT	ref_3640_upstream	57	33	48	53	31	31	19	49	12	44
CTCTGCGCGCATATGT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
GGCGCAAAATGGTTCA	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
AACACCGCGGGGTAAA	ref_3640_upstream	17	8	24	13	12	16	14	9	7	13
TTCTACTCGTAGTTTT	alt_3640_upstream	120	119	122	142	132	105	143	100	150	123
TTCAGTATAGTAGGTA	ref_3640_upstream	37	18	40	27	19	31	24	32	20	31
GGATCATTCCTGTTAA	ref_3640_upstream	24	13	14	21	23	34	10	18	12	21
TTTGTAAGCTACCGAT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTAAAACCAAGT	ref_3640_upstream	11	17	14	18	9	5	14	19	7	8
ATCTCTCAATTTCAAA	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCTTCAAAGTTTG	ref_3640_upstream	37	20	52	43	33	35	24	36	37	38
TATCGCTGAGAGCTAC	ref_3640_upstream	36	18	30	36	21	27	22	29	29	39
CCATTCGTCAGGATCA	ref_3640_upstream	9	9	12	19	15	17	10	16	10	26
ACCGATACCAGGGCGA	ref_3640_upstream	84	62	110	101	52	91	71	96	55	79
AACAATCTGGTTCGGC	ref_3640_upstream	23	18	49	35	23	32	28	29	19	33
CCCTTTCCGCCACCGG	ref_3640_upstream	26	20	24	26	20	25	14	39	17	25
CTCGGCCCTCGGCCCA	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTTTATACGCCCC	ref_3640_upstream	36	23	32	25	25	12	16	22	11	17
CTCTTTTCCTTGACAT	ref_3640_upstream	10	7	29	21	8	14	5	18	19	9
CGCAACGCTCTTAAAG	ref_3640_upstream	6	11	6	11	10	10	4	10	6	12
CGTCGCTGTAACCAGT	ref_3640_upstream	6	10	6	6	8	6	8	8	4	2
GTTAAAAAAGTCTTGG	ref_3640_upstream	8	4	5	5	8	9	6	10	3	12
CGTCCGTTTCTCACTC	ref_3640_upstream	59	37	67	56	34	49	23	49	21	51
CATTTCTCTTGTGTAA	ref_3640_upstream	28	21	31	36	16	17	21	38	15	19
AACAGATCCAATCAAG	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
ATCACTGGACGTCTCT	ref_3640_upstream	70	44	106	89	36	72	61	66	64	63
CTATCATACCTTGCTA	alt_3640_upstream	105	159	112	88	137	119	139	115	133	97
GTGAATCCTTGAGCCC	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTCCGTATCTCG	ref_3640_upstream	73	39	71	78	46	48	48	45	36	50
GTGTATCATACAAAAT	alt_3640_upstream	23	13	29	26	21	28	12	23	12	32
GTAGGATTGTCGCATC	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
ACAAAATCAATTGATG	ref_3640_upstream	24	12	35	32	16	23	15	25	18	24
TGCCTAAGTTTAGATT	ref_3640_upstream	79	60	109	90	60	71	76	98	63	76
ACGTTATGCCCCGGTC	ref_3640_upstream	7	3	6	4	1	3	4	4	1	4
CTTTAGTACCTAAACT	ref_3640_upstream	141	94	156	142	99	130	97	139	101	125
AGAAGTCTCGCCCCCG	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCGCGACTTCATT	ref_3640_upstream	6	2	6	5	0	3	1	5	1	1
ACTGCTCCATCCACAC	ref_3640_upstream	82	50	89	66	48	66	40	76	56	62
TTTGTTCCTTTCGCGA	ref_3640_upstream	39	30	42	42	23	45	29	42	20	43
ACGACCTTGGTTAGGC	alt_3640_upstream	77	108	100	80	86	77	100	86	74	81
GGAGAGAGGTGGGTTT	ref_3640_upstream	15	5	26	15	10	9	9	11	9	14
CGCCTCGTTCTATGCT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTGCTCTGGGTCT	ref_3640_upstream	31	24	39	35	26	36	24	40	25	50
AATCCTTCCAAAAGAC	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
AAATCCCAAAGGTCCC	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TCTATTGTCTCTGCTA	ref_3640_upstream	23	16	36	37	17	30	27	36	14	27
TACGCCCATTTACCCA	ref_3640_upstream	32	24	27	28	24	25	21	24	28	33
CTTTTCTTCCTCGCCG	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTGTACTTAGGTA	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTACCTCATTTTT	ref_3640_upstream	37	19	39	42	20	25	24	41	24	33
TTTTTGTAACTGTAGA	ref_3640_upstream	27	11	34	24	21	23	16	19	10	23
CGGTTACCGTAATGGT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
AACCCCTGTAGTTTTT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGGATACGCTTCG	ref_3640_upstream	74	153	99	93	184	77	164	74	167	67
AAACTTACTACACGTT	ref_3640_upstream	49	19	43	38	28	40	28	53	33	30
GTGCCTTCATGATTCG	ref_3640_upstream	29	17	32	47	21	35	26	31	20	23
TGCACGTGCGGATGTT	ref_3640_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCCGTACCACTTT	ref_3640_upstream	3	2	4	7	7	4	6	7	3	6
AACACACTGTTTCGAG	ref_3640_upstream	9	6	14	14	12	7	10	15	8	16
TTGGGTAGTTTCATTT	alt_3640_upstream	1	0	1	0	0	4	0	0	0	1
TGTAAGATTCGCACGG	ref_3640_upstream	21	18	36	21	17	21	23	28	12	28
ATTTAACAACGCGGCG	ref_3640_upstream	209	129	230	229	119	213	137	211	120	187
AGTTTCTCGACGCCAT	ref_3640_upstream	57	40	56	58	38	62	41	43	49	54
TTTCTGATCTGTGTCG	alt_828_negative	15	14	18	10	25	9	22	9	17	12
AACCCTTTTGCAAATT	alt_828_negative	32	46	30	25	55	15	40	28	50	23
TCGTCCTCTTAACATC	alt_828_negative	27	32	16	21	32	16	20	20	34	20
CCCCTTGAGCTGGTCA	alt_828_negative	56	78	61	58	105	60	64	57	86	52
TGGGTGCAGCGCTAGC	alt_828_negative	21	25	17	23	42	21	41	22	33	22
GTTTTGTGGACACGTC	alt_828_negative	23	20	16	16	30	12	18	12	35	9
TTATGCTATGCCAGGT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
ATGAATTCAGAGTGTC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GTTGTTTTGTAGTCTC	alt_828_negative	74	116	82	55	107	69	134	58	136	66
GTGTAAGGTTCCTTAC	alt_828_negative	0	8	0	3	2	2	1	2	3	0
GGAAGCACTTGATGAT	alt_828_negative	27	24	24	28	21	16	24	16	33	15
GATATTGGGCCTGTCT	alt_828_negative	22	40	29	24	36	20	34	24	41	28
GCAGATCCTTCCTCGT	alt_828_negative	17	8	14	12	24	16	18	11	26	8
CTAGTGCTAACAACAC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TTTCCGCGTTTCACCA	alt_828_negative	25	30	20	17	33	26	29	25	44	19
CACTTTTTGATCGATG	alt_828_negative	29	46	38	33	62	32	44	39	66	23
GCCGTTTCTTTGCTGG	alt_828_negative	2	11	4	14	8	10	11	7	12	6
TGGCTGTTCAGTATTG	alt_828_negative	6	21	17	10	26	8	23	17	17	14
GGTAATCTAGATGCGA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GCTATTCGACAAGGCT	alt_828_negative	2	15	6	3	8	5	11	6	11	6
TGATCTATCATTCGAT	alt_828_negative	25	29	29	22	37	24	41	19	36	29
CTTCGGCTGGTTTTTG	alt_828_negative	123	183	164	126	169	101	184	129	229	112
TGTAGGTCGCGTACTC	alt_828_negative	24	28	17	18	29	21	27	17	48	15
TTTAACAGTCCATAGT	alt_828_negative	26	27	20	15	37	22	22	12	46	12
GTTCCTTGGCATCTAT	alt_828_negative	3	11	6	4	13	8	10	9	17	5
ACGCTTTGTTCAGTCT	alt_828_negative	26	49	40	40	53	32	60	24	52	29
AAGGTGCACACCTCTG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GCTGACTTAGGAGCCG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TTCAGAGTTAGCGATA	alt_828_negative	27	49	33	23	36	21	51	18	52	22
GGAAGGATGCTCGGAT	alt_828_negative	40	60	53	44	82	40	68	23	65	41
TAATGTATCGTCCTAT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
ATTTAAAGCGTTATTC	alt_828_negative	5	9	6	3	5	3	12	4	2	3
GGTTATACTTTCATGT	alt_828_negative	94	136	137	100	125	110	158	98	160	78
ATATTAGCCATTTCTG	alt_828_negative	2	4	2	2	3	0	2	2	6	2
TGTTTTTTTGGATGTC	alt_828_negative	35	70	61	45	60	34	65	38	79	24
ACTAACGCTTGCCTGA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GCCAGTTATCCATCCG	alt_828_negative	4	3	3	0	16	3	7	4	8	2
GAAATGGGCGACGCTA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TCCACCGTACAGGTTG	alt_828_negative	6	16	6	5	9	4	10	8	10	11
TTCAGGGCCGGTTCTA	alt_828_negative	20	22	9	11	18	17	27	18	32	18
GACGTACTGTCATAAC	alt_828_negative	21	32	17	19	24	22	30	16	30	8
CCTTGTTTTGTCGGAT	alt_828_negative	1	2	1	1	1	1	2	2	0	2
ATTGAATAGAGGCTGT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TCGTGCCTTCTCACCG	alt_828_negative	32	58	43	31	45	23	48	37	74	24
GTGGGTGAGTACAGGA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CTCTATTCTTCATTCT	alt_828_negative	127	178	127	126	175	103	188	137	197	121
GCAATCGACAGTCCTA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TATGGATTTGTCGTTA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TACCGCTCATATAACC	alt_828_negative	4	7	3	3	4	0	1	4	7	1
TTTGCCTTAATGTGAG	alt_828_negative	29	48	51	45	72	24	64	34	86	32
CGTCGTTGAGTACTAG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GACTATGCTAACTCAA	alt_828_negative	9	23	11	13	27	8	23	9	16	12
CTTTGACTCAGGTCAA	alt_828_negative	9	10	8	12	13	3	14	9	15	2
GATTCCAGGATACCGA	alt_828_negative	4	9	4	0	12	8	14	3	11	5
CCACGTAGACACCGTC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
ATGTAGCACGAGTTGA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GTTCGTCGGAAGGGTG	alt_828_negative	61	68	67	45	74	48	85	44	77	58
GAGTTTATGGTTTATC	alt_828_negative	8	18	16	5	14	10	10	7	13	6
AGTTGGATTGTTATTT	alt_828_negative	17	35	28	20	27	21	31	26	33	18
TTACCAATGCCAGTTA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CCCCGAGCCGCTTTAT	alt_828_negative	5	18	15	7	23	5	20	14	12	14
GGATGATTGAGCTGCG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
AGTTTAAAACTGGCAT	alt_828_negative	16	35	37	25	32	26	42	25	50	16
CTGTCGCGCATAACGA	alt_828_negative	16	28	28	18	25	18	27	18	35	14
CTTCGGTAGTTTTACG	alt_828_negative	31	46	39	38	61	32	46	26	56	22
TCGGCCCGACTAGCGT	alt_828_negative	11	23	30	19	29	7	24	15	21	16
ACACAACTTACTAAAG	alt_828_negative	39	52	48	56	79	21	62	33	76	30
CCAGAGGATAACGCTG	alt_828_negative	16	19	8	9	14	13	17	6	16	7
CGTCCATGCGGTATTC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TTACGTGACCATACGG	alt_828_negative	51	73	68	67	106	56	97	55	87	58
CACGTTCATGCTCAGG	alt_828_negative	17	17	20	10	22	19	29	16	23	13
GATTCAAAAAATTTAA	alt_828_negative	9	6	10	6	20	8	7	9	18	8
GTGGATTGCGGGGGAT	alt_828_negative	6	7	2	6	11	6	8	1	10	6
TTCGTTGCCCGTAACG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GCTTGTGTATGCCAGG	alt_828_negative	11	12	17	14	22	6	10	6	11	6
TTCTGAATGGCGATCA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CTCTAGAAAACATTAC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CACGCAAATTAGCTCC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CCATACCAACCAGTGC	alt_828_negative	2	2	1	7	5	2	7	3	5	0
ATAATTTATCCCGAGG	alt_828_negative	240	343	286	303	432	260	358	244	389	239
CTTTTTCGGGTAAGTG	alt_828_negative	6	10	12	9	9	8	12	2	18	4
TTGGGGCGAGATGCTT	alt_828_negative	13	20	16	11	25	9	22	18	11	11
TCTGAATCATTTTGCC	alt_828_negative	38	58	36	26	68	44	57	43	74	38
AGAGAGGTGTGTCATG	alt_828_negative	37	78	35	54	82	46	72	37	69	31
CCATCACAATGGGACC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CTGTGTTTTCGGATTG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GTGAGAATTTACTAAA	alt_828_negative	15	39	30	30	52	24	31	25	34	13
TGAAACAGAACTTTGT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TGGTACGGCTTTATTT	alt_828_negative	7	6	2	4	3	5	4	1	0	1
TATGGATGTATGAAGG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TTTAAGATGGTTCAGG	alt_828_negative	5	6	4	5	8	4	2	2	9	2
GAAGTGAGGCCCGGCA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TGAAAATTTGTCTCCA	alt_828_negative	76	94	88	88	84	72	95	69	113	68
GTGTCAATCCATTCAC	alt_828_negative	8	6	7	8	7	3	4	3	10	5
CTTACTTATGTCCGTC	alt_828_negative	114	158	133	103	163	96	153	101	149	99
CTTATTCTCGAACTTA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TGGGGTATCTTATATG	alt_828_negative	23	22	11	23	23	11	29	11	23	16
TGCGATTATCCCTCGC	alt_828_negative	4	10	5	3	6	6	5	5	5	3
GTTTCCTGCGTCCTAC	alt_828_negative	8	7	8	5	12	11	5	4	11	5
GTCTGTTATTATGCGT	alt_828_negative	1	13	5	4	17	5	7	4	10	7
TCGGTATCTTGGGACA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CTTCATTTTTATGAGC	alt_828_negative	14	29	17	17	13	14	27	24	28	17
AAGACGTGCTGTGTGT	alt_828_negative	15	24	17	22	31	15	26	14	26	12
ACATTCAAGCAAGGCA	alt_828_negative	64	78	74	63	89	52	86	52	85	66
AGCTTACTTCCCTTTA	alt_828_negative	11	13	12	15	19	14	19	12	19	11
CTGGTATATCTCCGGG	alt_828_negative	18	31	27	27	24	17	26	18	41	19
CAATCACAATGGGACC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TGGAGTTCATGTCTTC	alt_828_negative	44	68	80	46	58	58	58	46	59	43
GTTCATAAACCACCAC	alt_828_negative	49	113	66	82	128	75	120	64	114	63
CGTCCATCGTCACCGC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
AAATAGGTACCCCTAC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
AGTTCGAGCGTGCCCG	alt_828_negative	12	22	5	19	19	13	17	13	25	8
TCGTTGACTCGACCCC	alt_828_negative	7	10	14	9	12	9	11	9	14	4
TTGGCGGTGTCTAATC	alt_828_negative	58	47	32	50	47	29	50	35	75	27
ATTGATGTTTTGAGTA	alt_828_negative	193	231	261	187	281	206	296	206	293	182
GCTGGGTGTGGATGAC	alt_828_negative	36	81	65	51	72	47	78	45	99	51
CCCACAATTGCTAATA	alt_828_negative	5	10	5	5	6	9	9	3	9	5
CGGCTTTGACCCCGTT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
GCAGATGGAGATACTT	alt_828_negative	90	141	121	118	129	73	147	86	144	72
TCTGTACACGCTGCCT	alt_828_negative	13	9	7	9	16	6	9	5	18	7
GGGTGTCGTTAGTCCT	alt_828_negative	23	34	31	27	35	34	38	16	42	24
TGGAAACTGCGCTTAG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CTCTTCGCCTCGTCAT	alt_828_negative	93	239	113	99	248	83	205	92	268	83
TATTGGAAATTACGGC	alt_828_negative	8	13	10	8	14	7	16	7	15	12
GTTTCGCGGATCCTCT	alt_828_negative	22	29	26	29	24	14	31	19	40	19
AATCTGCATCGGGGCA	alt_828_negative	23	25	20	18	25	18	25	19	20	19
CCCGGCAAATTCTGTT	alt_828_negative	10	30	22	17	42	22	41	17	38	20
ACTATAGTTAACGTGT	alt_828_negative	8	8	6	6	13	7	15	5	12	3
GGGCACTCCACTATGC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CAAGGTTTCCCTTTGC	alt_828_negative	14	15	16	11	13	13	18	13	7	7
GGATACCTCTTAGTGT	alt_828_negative	168	239	182	152	276	139	267	156	286	132
CGTCTTGACAACTCCC	alt_828_negative	0	6	0	0	3	0	2	0	8	0
GTATCGGACATCCGCT	alt_828_negative	24	42	23	32	50	30	51	32	44	24
GGCTTTTGAAGATAAG	alt_828_negative	5	7	8	3	6	2	5	8	10	4
CGGTCGAGGCAATGTA	alt_828_negative	99	117	93	89	149	82	156	71	165	93
TCTGACATTGCGTCTT	alt_828_negative	10	13	17	12	22	6	17	9	24	13
TCATTTGCTCCCCACG	alt_828_negative	165	278	200	172	330	178	330	153	346	151
GGTTCTCAGGTAGTGG	alt_828_negative	0	0	1	0	1	2	0	1	2	0
GCCAATGACGTATTAG	alt_828_negative	11	27	15	19	36	16	9	10	25	16
CCGTTTACACGCTAAA	alt_828_negative	16	27	29	20	34	14	50	21	27	20
TTGGAACTAGGACCAT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TCATGCTCAATAGGTA	alt_828_negative	5	34	9	12	31	12	29	13	29	17
CGGCTCCGGTGATTCT	alt_828_negative	10	12	30	19	21	22	31	20	21	22
TAACTCAGGCCTCATT	alt_828_negative	51	85	49	50	90	49	91	45	85	66
ATTTCGTTTTTAATAA	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CTAACGCGGAAATGAA	alt_828_negative	5	5	3	4	0	1	3	5	5	4
AGTACCGCTCGACTGT	alt_828_negative	1	7	8	1	13	1	7	9	8	2
ATGCCAGTCTGGCTCT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
TGCACCCGTAGGTTAG	alt_828_negative	29	69	58	36	76	48	63	48	82	46
CTGACTTGGTATTCGG	alt_828_negative	10	26	20	16	26	11	22	13	26	11
TCAGATATTGTGATCG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
ACAAATCATACTCGCC	alt_828_negative	0	0	0	0	0	0	0	0	0	0
CGTCGGTCCTTTCTTA	alt_828_negative	99	147	114	86	162	105	157	89	166	100
GGCCTTACTGTCACAG	alt_828_negative	0	0	0	0	0	0	0	0	0	0
ATCGTACTATGCGGAT	alt_828_negative	0	0	0	0	0	0	0	0	0	0
ATTTCCACCGCATCTG	alt_828_negative	52	54	67	58	58	44	76	49	78	32
GCGGGAAGAGTAAGTT	alt_828_negative	36	45	47	39	41	27	40	27	38	29
AGCTTTCTTTACTCTC	alt_828_negative	8	8	12	8	5	3	4	3	11	1
TTTCTGCCTATCATGA	alt_828_negative	15	19	17	16	24	15	15	13	31	11
GGATTGATACTAACCA	alt_828_negative	4	9	9	2	8	3	6	8	13	2
TCACGTCTCAATCCAT	alt_4381_missing	4	7	6	2	5	5	9	2	13	2
GCGGAAATCCAGAGTT	alt_4381_missing	9	24	11	11	33	21	24	11	35	6
AGGAACGATTCAGGAC	alt_4381_missing	4	18	5	4	18	4	15	7	31	9
CACTATGCCGCCATGA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
ACGGATTCTGTCTTCT	alt_4381_missing	5	21	2	2	11	3	17	6	9	2
ATCTGGTTCACGACCC	alt_4381_missing	6	10	3	1	3	6	6	5	10	3
ACGCTCCTCAGGGTAG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
CCCGCTTTTGGCTGGT	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
AATTAATACTCCAGCC	alt_4381_missing	2	9	4	5	9	1	7	6	9	2
TGACTAGAGTACTGAA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TGTCGCTCTGTCCGTA	alt_4381_missing	11	38	15	12	23	16	38	15	30	7
GCACGGCCTCCTCCAG	alt_4381_missing	4	12	5	6	12	2	16	5	12	4
GGTCGACCCGAATCGC	alt_4381_missing	5	15	11	12	11	11	19	8	13	4
ATACTATAGGATAGTG	alt_4381_missing	13	31	21	10	54	16	28	9	30	8
GCCGTGTCTGGCCTGT	alt_4381_missing	3	16	10	4	7	3	23	3	22	3
CCCTATTACCCTGTTT	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TTAAGTGCGGACACAC	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
GGGTGAGCTTCCGGGA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TATTCGTTGACGCATT	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
CTTGTGTCTATTGATA	alt_4381_missing	0	0	0	0	2	0	1	2	2	0
TCTTTCTCCTTGAGAC	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
AATGCCTCTGATGGAT	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
ATTCTTTTGAAATTGT	alt_4381_missing	4	16	4	4	12	5	10	2	13	9
TTTATCTTATTTTGTA	alt_4381_missing	46	111	51	46	98	42	103	51	113	39
AGAACTTGTTTCGAGC	alt_4381_missing	3	7	4	1	4	1	8	3	3	3
GCTTAATTTTGTGTGA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TGTGCTTCATATTTCG	alt_4381_missing	1	2	0	3	6	0	2	2	1	1
TCTACTGCAGCTGTTG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TGAACACCTCATCCTA	alt_4381_missing	3	23	8	7	19	8	9	5	13	6
GTCCCATACGTTGGTA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TAATTTACGGTGTGCA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
CTAATACCCCTTCTTC	alt_4381_missing	0	3	1	0	0	0	0	0	0	0
CAGTTAATAAGCTAGG	alt_4381_missing	11	33	12	7	23	6	27	7	30	8
TCCTGCATAGTCCTGA	alt_4381_missing	0	8	5	0	4	3	1	1	5	1
CTTTGCTGTATCCTTG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TGCACGCAAGCCCACG	alt_4381_missing	8	22	8	5	24	6	21	6	20	7
TTTGGGCAACCGGTTC	alt_4381_missing	14	20	16	11	20	4	19	5	26	7
CATAAGGCATACTATG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TGTAGTTGCCTTGTGG	alt_4381_missing	5	17	11	0	21	3	15	4	19	10
GTATGATACTTTACCA	ref_4381_missing	2	11	1	2	13	5	9	3	8	5
ATCCACTTGCTGCCTG	ref_4381_missing	2	13	5	7	13	7	12	6	12	4
TTATTCTGATATCGGC	alt_4381_missing	2	7	3	5	9	1	6	3	17	1
GGGGTACTTCCTGCTC	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
ATAGTTCTAGCGGCTT	alt_4381_missing	8	27	15	9	25	5	26	9	17	7
TCTTGTTCTTCTTACT	alt_4381_missing	1	1	3	1	1	1	0	1	1	0
GTGGGTGATTACCTGC	ref_4381_missing	0	6	11	5	18	8	14	2	14	5
GCCTCGTGACTGGTGG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
CGTTCAAGTTGATTTG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
CCTGATCATTCGCTGA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TTCTCAGGATCGCGCG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
ACTGGGTCGCCCCGTG	alt_4381_missing	5	20	8	9	9	3	22	10	27	11
TGGCACATTCGGCCCC	alt_4381_missing	7	28	11	10	19	10	34	8	32	7
CGTGGTCTAGAACAGT	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TCTCTATTGTATGCCG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TCGAATATAGCATCCG	alt_4381_missing	8	11	6	7	13	3	13	5	12	4
AGGGACTTTGTGTTTC	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
CTAACATCTTGGGCGT	alt_4381_missing	6	15	8	4	13	8	17	1	19	5
CGTTTTGTATCCCATG	alt_4381_missing	35	58	32	26	56	21	61	31	60	23
AAACTTTCGCCTGAGT	alt_4381_missing	2	8	7	4	10	6	17	4	15	5
GTACTTGTAACGAGCA	alt_4381_missing	3	11	5	9	10	5	9	5	10	3
CCTACGAGTATACGTG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TCGGTGTTTCTGGGCA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
CCTTTGCGGAGTATGG	alt_4381_missing	5	27	13	7	27	16	28	6	19	7
GGTCGTCAGTCTTTAC	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TTGTATTGGGGATCTC	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TGTCTGGGGTTCTCAA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TGAGACCTTAAGCAAA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
GATGCGACCGAAATAG	alt_4381_missing	2	13	4	2	8	4	6	4	1	4
TCAGTTAAAGTACTTT	alt_4381_missing	2	0	0	0	3	0	1	1	2	1
TGACATCCGACATGTA	alt_4381_missing	3	0	0	0	1	0	4	1	0	0
ACTTAGCAGTTTTATT	alt_4381_missing	4	11	7	3	10	1	12	6	12	3
TGGGAGAATCTCGACA	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TATTACTTTCAGCCGC	alt_4381_missing	2	6	2	4	6	0	4	0	4	3
GTCGTTTAGATATAGC	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
GGAGGTTATGTTAGTT	alt_4381_missing	4	12	9	3	5	1	16	4	15	3
GGTTCGTTATTTCCGG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TCACGGTTACCTCGAT	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
TTTCATGCTTGCATCG	alt_4381_missing	0	0	0	0	0	0	0	0	0	0
GGGTCAATTTCGCGCG	alt_4381_missing	1	5	1	0	0	1	0	0	8	4
GTGTGTACCGGGGGTA	alt_4381_missing	0	2	1	5	1	3	3	3	2	2
ACATAGCGATTCGTAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTATTAGATCACGGGT	alt_1269_reverse	31	48	32	25	35	24	38	33	44	24
TTTCCGTTTGGAGGAT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGGTTACCGCGCT	alt_1269_reverse	27	20	25	29	26	23	26	19	29	15
GACTTGGAACCCCTTG	alt_1269_reverse	47	48	59	33	60	32	40	32	56	42
ACTAATCGGGTTCCTG	alt_1269_reverse	22	35	28	36	30	23	50	25	37	28
TATCTCTTATTTCCTC	alt_1269_reverse	34	21	37	30	30	26	23	30	21	24
TTAGAGCAGACGGGGA	alt_1269_reverse	14	31	17	6	28	19	17	16	30	14
CTGATCCTTCCGAATG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TAATGGTGTCCGGCGA	alt_1269_reverse	30	42	34	21	36	22	42	25	26	27
GGTAGTAGTTCTTTCT	alt_1269_reverse	52	49	63	46	54	48	61	53	55	40
TTGGGCATATACCTTA	alt_1269_reverse	4	1	7	2	8	0	5	3	6	1
AAACAGCGTATATCCT	alt_1269_reverse	1	1	2	2	4	1	3	1	4	2
CCATTCAAGGTCTCGT	alt_1269_reverse	30	29	32	21	29	19	32	17	44	24
GTCAACGTCTTTCATT	alt_1269_reverse	46	39	36	27	42	35	41	30	41	24
ACTAGGTAGCAGGTAA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTTAAGTAAAGTTTTA	alt_1269_reverse	10	8	12	18	11	13	7	14	10	10
AGTGTATCCTATTGGT	alt_1269_reverse	27	45	34	23	37	29	46	34	39	25
GGGATTGACTTGAGCT	alt_1269_reverse	14	27	17	16	20	9	22	14	30	21
GCGCGCGCACTGAGCT	alt_1269_reverse	2	4	0	1	2	0	0	1	1	1
CGAATCACTTACATCC	alt_1269_reverse	13	23	29	20	23	11	19	10	24	16
CCGAAATTGGCACTTC	alt_1269_reverse	119	155	165	152	159	125	201	166	171	120
CTACGCGACTACACTT	alt_1269_reverse	20	20	23	16	17	18	23	12	23	13
GCCTTCGGGATAGATC	alt_1269_reverse	50	60	83	70	75	62	61	55	67	58
TGGTCTGGACACTTCT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TAAGATTCGCGTTATG	alt_1269_reverse	16	14	22	10	18	12	26	14	28	16
TTATCGCCGGATTTGG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCACTGTTGTCACTGA	alt_1269_reverse	47	73	53	60	85	42	87	46	85	45
TGGTCTTGATCACTCC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CACAATTTATGTAGTG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTCTCTGGTACTT	alt_1269_reverse	38	56	32	41	46	36	44	28	50	30
GCGCAACGCAATCTCG	alt_1269_reverse	19	24	21	16	20	15	18	9	23	16
CGACCCATGTGCCAAA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTCATTCGCGTG	alt_1269_reverse	370	379	417	340	370	349	376	337	365	323
CCGCTGTGTTAGACTG	alt_1269_reverse	35	39	39	20	45	34	42	34	47	27
CAATAAACTCTTTGCA	alt_1269_reverse	4	16	11	9	5	12	5	7	7	8
ATATGTTATACTCTAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CAATTTGTGACGCGCA	alt_1269_reverse	18	28	29	18	23	26	20	15	32	19
GTTCGTCGGTCACATA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGGTTCATCGTCC	alt_1269_reverse	21	15	22	17	17	16	20	13	26	17
GACCGCATAAGGCACT	alt_1269_reverse	22	30	37	25	35	26	43	36	24	35
GCTGGCTTCGACTCCC	alt_1269_reverse	43	64	59	55	70	47	50	47	65	45
GGCTTGGTCATTCGGA	alt_1269_reverse	52	49	55	55	70	47	68	53	56	29
GTCTCATGGTGCATCT	alt_1269_reverse	16	20	18	24	24	14	24	17	23	25
CGACTAGGGTGTGCTC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTCGAATTTTTCT	alt_1269_reverse	22	33	37	17	32	28	36	19	40	23
CTGCCTGCCCCAGGTT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CAAGTGGATGCTCTTC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTAGCGATCTGTT	alt_1269_reverse	18	27	41	24	42	31	36	26	44	21
GCGTTTTTTTGGTACG	alt_1269_reverse	25	35	46	35	41	26	70	33	58	37
GTTTCATACCTTTTTG	alt_1269_reverse	23	27	27	18	31	28	23	21	31	14
ATATGCGCCAGCGTTC	alt_1269_reverse	9	11	9	2	7	9	3	10	9	6
GACTTCGAGTAGCACG	alt_1269_reverse	53	51	41	49	44	52	46	29	64	37
CATCTGGAGTCTGGTC	alt_1269_reverse	47	54	54	44	66	56	69	38	60	45
GCCTTACTTGCATCTG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCCAGGAACTCAA	alt_1269_reverse	22	29	30	35	26	25	26	32	34	22
GCGAGCGTCTCTTATG	alt_1269_reverse	8	18	12	15	21	14	11	7	11	6
CCACTTTTTACTCCAT	alt_1269_reverse	35	44	35	42	33	19	26	27	45	20
TCCGCACGAAATATAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTATGGTGGACAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CTAATTGCCATTGTAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGCGTCTTGTGGG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTCCGTAATTTGA	alt_1269_reverse	0	1	1	5	2	0	3	2	2	2
TGTCGAATGTTCAGTT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCGATTGTTTTCCGCC	alt_1269_reverse	2	0	4	0	2	1	4	2	6	1
CTGTGGTCTAGAACAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTTTTGACCTCG	alt_1269_reverse	54	80	55	49	73	52	76	62	59	57
TGCACATTAAGCCTCC	alt_1269_reverse	41	40	43	39	47	34	53	37	45	25
CACCCTCGCCGATCAG	alt_1269_reverse	9	89	17	6	74	5	86	6	88	15
CAGTGTTTCCACGCGC	alt_1269_reverse	1	9	3	8	2	2	4	2	3	4
GTATGTTTACCACCTT	alt_1269_reverse	56	64	57	53	64	59	65	61	73	63
AGGGCCACTGCCATAC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCCTGAGGTTTT	alt_1269_reverse	16	34	38	34	51	34	34	39	45	33
GGACCCGTGTTTGCGT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CTCCCGCGTAGCGCCA	alt_1269_reverse	24	37	27	35	25	14	27	21	33	30
AGTAGGTTCATCGTCC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTTGAGAAGGGGATGA	alt_1269_reverse	24	35	39	20	21	27	35	25	30	34
AGTGATTCGCCGATTG	alt_1269_reverse	5	7	4	12	7	7	4	16	10	11
TAGTTCTTCTAGTTAT	alt_1269_reverse	24	31	38	36	30	28	34	31	48	26
TAGGTTCATATCCCGC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGCCTCCGGTCG	alt_1269_reverse	26	26	41	51	36	27	33	29	50	33
TAATGCCATGATCCTA	alt_1269_reverse	15	13	13	19	22	18	25	15	14	18
GTTGATTGTCCGATCT	alt_1269_reverse	15	29	17	26	36	19	32	22	27	23
TGGCCCCGGAGAATAC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTTTCGACAGTAA	alt_1269_reverse	65	56	75	60	75	61	73	53	82	47
ATCTACTATGACCCCG	alt_1269_reverse	11	14	9	14	13	19	15	9	12	10
TTGGATCAGAAGGGCA	alt_1269_reverse	63	99	77	79	94	84	102	59	78	55
GGATGTGGTGGATGTC	alt_1269_reverse	7	6	13	9	5	10	7	6	7	7
CACCTGGATTTTGGTT	alt_1269_reverse	66	114	71	61	92	57	78	51	109	53
ATGATTATCCTGTTTA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAATTTCCTGAGT	alt_1269_reverse	26	39	32	28	26	27	37	26	23	34
GGACCAATACCCCATC	alt_1269_reverse	26	44	37	33	45	32	47	23	38	28
GTCTTGCGATACAACC	alt_1269_reverse	5	6	15	12	7	6	7	8	11	4
TGCCATCCCCTTCAGA	alt_1269_reverse	4	9	12	5	17	11	14	10	14	7
CCTCCGTAAATAGGGT	alt_1269_reverse	21	27	19	30	30	18	32	25	39	15
CCCTTGGCAATTTAGC	alt_1269_reverse	40	47	50	39	74	37	53	28	59	34
ATTGGGGGTTCACTCG	alt_1269_reverse	22	27	22	27	21	24	29	17	32	27
TGTTGCAGGTCATTAT	alt_1269_reverse	53	52	65	62	44	50	89	61	87	48
TTGTTACCCTGGCCAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGACTGGGAACCG	alt_1269_reverse	22	16	17	20	11	16	26	17	17	19
TTGAATTTGTACCAAG	alt_1269_reverse	43	47	44	39	49	34	54	47	43	38
AATTGCTTTAAAGGAT	alt_1269_reverse	21	9	18	28	19	19	30	14	21	13
ATAGGTCAGCTTCTTG	alt_1269_reverse	37	36	38	40	58	36	43	46	33	33
AGCTAATAAGTCCCTA	alt_1269_reverse	21	24	24	16	23	25	32	32	19	15
AAGAGCGGAAATGTTG	alt_1269_reverse	15	28	19	21	14	24	35	26	16	19
CACATCTCGAACATAC	alt_1269_reverse	0	0	0	0	0	1	0	0	1	1
ATGTATCTCGGACCCT	alt_1269_reverse	91	100	118	107	143	102	134	93	118	98
GAGTGTCGTATCGGCA	alt_1269_reverse	66	71	81	65	58	57	71	59	87	53
CGTGGGTAGCTTTTTG	alt_1269_reverse	26	19	19	29	23	19	17	27	23	26
CAATCCTCGTATCCTG	alt_1269_reverse	22	33	28	20	25	23	20	29	35	21
TTCGTCCCTGAGGAGC	alt_1269_reverse	23	21	21	21	29	17	35	21	39	23
TCTATGGGTCACCGGG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTAGGGATTCTGG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGCATAGGCGGGG	alt_1269_reverse	14	37	34	18	27	20	39	25	36	15
ATTTTCGCATATTCCT	alt_1269_reverse	93	96	107	95	141	102	121	97	112	98
GTTCCCTCTTTACCCA	alt_1269_reverse	5	4	10	3	6	5	8	3	2	3
TAGTATTTCTTCCGAA	alt_1269_reverse	16	13	22	12	19	12	8	9	19	13
CATGTGTCTCGAGCCA	alt_1269_reverse	3	3	2	8	8	1	8	4	2	1
CTACTTGGCACTGCGA	alt_1269_reverse	11	7	8	6	7	5	12	7	7	9
TTTAGAGAACGCTAAC	alt_1269_reverse	2	5	7	0	3	2	1	1	4	3
GCGATCTGCTCCCTCG	alt_1269_reverse	115	153	132	128	140	120	128	98	163	115
GTTCCTAGCGTGTATA	alt_1269_reverse	26	56	36	38	53	30	47	49	48	28
AGGTAATAAGTTCTAA	alt_1269_reverse	7	3	7	3	6	4	8	6	4	2
CACAACTATCATAGCT	alt_1269_reverse	11	28	17	14	27	9	22	8	27	23
TGAACACATTGCACAG	alt_1269_reverse	22	16	29	19	17	12	23	12	25	7
CATCTTGAGCTTATCG	alt_1269_reverse	54	56	60	46	69	44	72	51	70	52
CTCGTTTTTCTAATAG	alt_1269_reverse	15	11	26	19	19	18	21	15	25	13
CCAATACTACATTTAA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCGGCCCTGTTAA	alt_1269_reverse	6	20	9	12	11	8	24	6	12	12
GCTTTATTTGGTCTTC	alt_1269_reverse	10	12	19	11	17	15	16	14	21	12
TTGGTAATCTCTTTCT	alt_1269_reverse	261	202	293	257	220	208	207	199	222	224
CTAATTAGTCTATAGG	alt_1269_reverse	7	13	7	12	16	9	11	7	9	9
GATTTTTTTAATTGTA	alt_1269_reverse	7	8	15	5	9	5	10	11	23	8
GGAACATGTTAAGGGG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTACGTTTTTCGC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
ACAAACTCTGTTCAGT	alt_1269_reverse	20	22	23	15	28	17	16	16	25	21
TATTTATTTTGTCCCA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CATCCAAAATCCTGGA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCAGCATTAAATT	alt_1269_reverse	51	50	42	36	39	42	53	33	54	45
ACACGCACTCATAGCC	alt_1269_reverse	21	66	36	30	72	13	60	24	62	13
TGTGGTCCCGCATCGT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCAGACTAGGTTC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGACAATACAGGG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GACACACGACTCTGTT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TAGGAAAGTCGGGGTC	alt_1269_reverse	17	23	26	35	30	27	37	20	33	19
AATACTGGGCCGCATA	alt_1269_reverse	24	40	45	32	45	30	47	34	42	33
CGTATTCGGTAGGTTT	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
ACTAGGTCTGCATGTA	alt_1269_reverse	6	2	8	7	4	3	5	9	5	5
ATGTGTATACTGTACT	alt_1269_reverse	23	31	31	15	32	17	24	15	29	23
CTCTATGTTCCTTTTT	alt_1269_reverse	36	44	46	52	48	40	48	46	37	29
GCCCGTGGAAGCTTTA	alt_1269_reverse	7	18	16	21	18	12	23	11	17	20
CTTTGACTGGGTTGGC	alt_1269_reverse	17	25	18	18	19	25	23	21	26	16
CCTGGAATACCTTCTA	alt_1269_reverse	12	20	17	12	10	16	13	12	17	8
TGTCGGACCTGAACAA	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGCTGTGCTTTTC	alt_1269_reverse	37	37	58	45	45	30	61	37	50	33
GCGTCCGGTTGCTGTC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CCGGGCCTTCTTAATC	alt_1269_reverse	5	16	8	8	12	9	12	5	9	7
ACCTCAAAGAATTTAC	alt_1269_reverse	27	28	37	35	46	26	43	37	30	31
CTTTAAGTAGAAGTCA	alt_1269_reverse	27	17	18	23	22	18	19	14	27	22
GAGCCCCATGGGCGCA	alt_1269_reverse	36	32	40	35	23	33	36	16	33	26
TCTCACTCAGCGTTAC	alt_1269_reverse	126	101	147	126	113	106	125	105	100	110
TTAATTTTGCGATAGA	alt_1269_reverse	18	17	25	22	30	20	27	22	21	11
CGGTGTCATACCCTCT	alt_1269_reverse	2	3	3	4	6	5	6	5	4	4
TACTTTTTAGTGAGCG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTTATAATCGGTA	alt_1269_reverse	45	46	46	30	29	36	51	47	52	25
GGTTACTTGAGCACCG	alt_1269_reverse	69	70	78	66	63	42	61	51	88	55
ATTCCCAATAGACGGG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGTGCCGTGTAGC	alt_1269_reverse	2	4	3	2	1	1	3	2	5	2
TTACTCTCGATTTTAC	alt_1269_reverse	92	94	108	105	101	95	106	91	93	102
GTACGGTACTCATCTC	alt_1269_reverse	29	35	34	31	40	24	51	29	44	32
TTGTAGGAATGATTGC	alt_1269_reverse	32	38	47	34	42	40	46	26	52	29
ATGCATGACAGATAGA	alt_1269_reverse	34	32	38	40	34	20	30	26	31	23
AGGCTTTAGGTAAAGG	alt_1269_reverse	10	6	9	5	11	5	5	4	12	7
TCAAAGAATATGCTGC	alt_1269_reverse	40	27	35	33	24	15	35	32	30	20
AACAAGGCAACCTGGC	alt_1269_reverse	68	72	57	77	87	35	76	42	59	40
ACCGCCGCACGCGATG	alt_1269_reverse	32	27	30	27	43	22	40	25	44	27
GCTGTGACTGTACCCG	alt_1269_reverse	5	17	6	3	9	3	20	9	15	2
GTACCGCTCCGCAAAC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTCTATTTGTTCTTGG	alt_1269_reverse	3	2	1	5	7	2	3	2	5	0
ATAAAAGGTGCTCAGA	alt_1269_reverse	27	38	33	30	30	33	28	26	26	21
GTGTACTATTTAAGCC	alt_1269_reverse	19	25	15	12	22	17	24	11	28	12
TTATCTCCATTAATCG	alt_1269_reverse	9	6	4	13	16	8	17	7	14	3
TGTACCGAATCGTTTT	alt_1269_reverse	15	33	28	20	30	31	28	33	35	21
TTACTCAATGCTTCGG	alt_1269_reverse	3	11	6	8	13	2	11	3	7	3
TATCTATTGCTCGACA	alt_1269_reverse	15	18	22	11	23	13	32	11	32	16
TCTTTATTGTCTCACT	alt_1269_reverse	27	23	48	27	36	38	32	21	31	27
ACGTTCCCCTAGCATC	alt_1269_reverse	21	35	16	13	23	18	21	15	38	17
ACAGCGCTCAAGCTAG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTCATTCTTTCCT	alt_1269_reverse	3	2	4	3	7	3	2	1	0	0
CGGCACTGCTGAACAC	alt_1269_reverse	56	67	63	49	59	41	58	35	65	47
GCAAACGGGTTAGCTG	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TACCTAATTAGTGACT	alt_1269_reverse	46	26	33	29	26	21	34	31	32	34
TGGATGAAGGCAGTTC	alt_1269_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTCCCAAATTGA	alt_1269_reverse	41	40	47	35	54	31	48	29	56	25
TCGGCGTCAGATAGTA	alt_1269_reverse	28	40	39	29	30	24	38	42	39	21
GGTAAATTTTTCTATC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CATACGTTAAGGGTTT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
AGAACGCTCGTCACAC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TCCAGGTATGATATTA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TTAATCAACGGAACTC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
ATATCGACACAAATTG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GCGCCTTTTTAAGTAT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGACGGATGAGATGGC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CGGTAATGCTGCTACG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GTCTGTCTAATCCCTT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CCTGTATCATCCGTGT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGATCAATCAATCTTG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTATGTCCAAGT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GTTCTCAGGATATTTA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGTATAAAGTTGTTAA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
AGATATTGGCTTCCTG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GGAAGGCGCTTGTCCT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CGTCGGCTAATCCGCC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GCTGTAAGACAAAACT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
AGACTAACAGGTCCAC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGGCTGTCTGCTATCC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GTTACATCAGCGTGGA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CGGCCTGATTGAGGCC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TTGTGGAGATTAGATT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CTCAGATGCATCCTAA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TCTGCGTTAGCTTCGA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TTGACGAACCAAAGAC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGACACGTGGAATCGG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CCGCCGCATCACGCCG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CTCGAAAATCCCTAGT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CTCCACCGATTTAATG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
ATTCTTTGCAAGCAGG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TAATGACCTACACCTA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GCGCCAGCACAGAGTA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGTCCCTGCTCATACA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TTGTTAGCCACTCCAG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CTATCTGGCTCGAACC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TTTGAGGCACTTATAT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TGGACCAGTCAAACGT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CCTCATTCTCTATGCT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGAATTACTCGTTCAC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
ACGTATTGGACGATCC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
ATGGTCTCGTTGCCAT	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
TATTGAGTGCTTGCTA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GTTGTGACGTGCGCAG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
AAGTAAGTACTAACTG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CCCTCGTGACGTGAAG	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CTTTACTTATGGCATC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CGTTGATGTGTGCCTC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CCGTGTATATGTAATC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
GGGAAGCGGTCGCCGC	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
CCTTTTTGGAGTACGA	alt_4481_missing	0	0	0	0	0	0	0	0	0	0
ATAGTTGCGTGTAGGC	alt_5092_fdr	6	4	3	3	5	5	8	5	6	3
GTGACGCTTCAAATCT	alt_5092_fdr	33	56	56	50	56	38	54	46	55	28
AAACACGCACGCAGTC	alt_5092_fdr	16	22	20	24	22	7	18	19	27	16
TTCACCGAGAACTTAC	alt_5092_fdr	12	115	8	8	86	7	110	5	162	7
TCCGACAGTTTGTACT	alt_5092_fdr	68	102	99	71	96	59	104	67	90	60
ATGCGCGCCCCTTCCT	alt_5092_fdr	46	69	71	42	49	35	66	31	61	37
TACTGCATAGTTATCT	alt_5092_fdr	30	29	31	35	27	35	48	43	46	31
TCAATGTTTTCGATGA	alt_5092_fdr	6	8	8	4	10	5	4	3	7	4
TAGAAGGGTTTCTGGC	alt_5092_fdr	4	12	13	4	7	10	16	4	8	8
ATTTAATAGGGCTGGT	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGAGACTTACCTC	alt_5092_fdr	3	26	1	1	15	1	20	2	18	3
GGTAGTAATGAGACGG	alt_5092_fdr	1	0	0	0	4	1	2	2	0	0
CCTCGTGAATAACCCA	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTTAGCGGAGAAA	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
ATGAAACCGTGGACAA	alt_5092_fdr	71	78	83	78	95	83	101	72	86	71
AAATAGTAATACGGTC	alt_5092_fdr	29	30	20	21	24	18	27	24	24	21
TTAATAGCACGCAACC	alt_5092_fdr	40	49	66	52	58	65	65	51	70	42
GATCATTGGGGATGTC	alt_5092_fdr	26	40	26	34	30	35	28	17	27	37
ACCTGTCTACAAGAGC	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTTCCCTAGCGT	alt_5092_fdr	41	38	40	45	48	44	48	41	54	40
TTGGCCCGTGCGGAAT	alt_5092_fdr	26	50	58	44	43	39	51	38	66	35
GGCTACTTAGTTCTTC	alt_5092_fdr	18	14	17	9	19	15	21	11	26	14
CGATGACAATATGACC	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCGAATCATTCGT	alt_5092_fdr	89	88	113	98	84	70	114	72	118	76
TGCAGATTGTCAGCCC	alt_5092_fdr	189	226	229	172	241	176	221	179	207	148
TCACTTCAATGTAGTA	alt_5092_fdr	10	6	9	4	5	7	8	6	7	5
TGCGGTCTTATGTCGA	alt_5092_fdr	117	142	163	141	138	118	172	120	165	127
GCTCAATGTCATGTGG	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
AATATATAGTACTGCT	alt_5092_fdr	156	213	223	191	233	170	212	180	231	161
GTGTGTATTGTTCTCT	alt_5092_fdr	84	109	102	88	95	97	111	87	102	90
GTTTAACAGAACACAG	alt_5092_fdr	56	50	65	44	55	49	51	54	57	51
CCTGTCACATAACATC	alt_5092_fdr	4	6	2	3	8	1	6	5	11	6
CTATTATGTTTCAGTT	alt_5092_fdr	34	44	40	34	29	20	32	22	40	19
ACGTACCGCCTGCTTT	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAACGTGTATCGT	alt_5092_fdr	69	119	73	82	113	87	113	50	116	51
TCTTTCAACTTTGCAC	alt_5092_fdr	46	46	34	35	33	28	39	17	37	22
GCTAATGGTACCTCGT	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGTTTTACCTTT	alt_5092_fdr	18	65	31	48	52	21	59	27	60	23
ACGTATACCATATGCA	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
GATTCTTTAGGTTCGA	alt_5092_fdr	9	4	9	5	2	6	8	8	7	3
CCTCGGCTTAGCCGTC	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
ACCTCAACGCTAATTT	alt_5092_fdr	92	156	111	103	142	77	173	101	173	69
ATCAATTCACTAGATA	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTTGTGTGCTTT	alt_5092_fdr	0	3	6	5	9	1	6	3	12	3
CCGAGGCCTTCTCGCC	alt_5092_fdr	10	29	19	13	23	12	25	10	28	8
CTAACTGATGCCCGTG	alt_5092_fdr	11	27	15	17	20	26	25	14	19	16
TTTGTTGCAGGTGAAC	alt_5092_fdr	122	186	180	145	196	162	180	171	183	148
TAAGTCACAGGCGTGC	alt_5092_fdr	6	13	20	5	16	8	11	9	18	7
TCCAGATTACGTACAC	alt_5092_fdr	32	22	33	25	36	25	42	28	43	35
TGTCACGGGCCGAGTC	alt_5092_fdr	43	43	47	26	57	33	48	39	40	36
ACTTAAAATCCCCTTT	alt_5092_fdr	76	79	98	81	79	79	59	78	71	73
ATTGTCAAGATTTCGG	alt_5092_fdr	15	16	24	11	16	15	16	9	17	11
ATTATCCTGTTGTCAG	alt_5092_fdr	58	77	72	53	38	57	53	53	79	34
CCGAGGGATCACAGCG	alt_5092_fdr	16	23	31	22	16	28	21	22	30	24
AAAGCAGCTTTACGGA	alt_5092_fdr	91	78	99	56	99	81	90	74	92	74
CTGTAAGCCAATGGTC	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCCACTTCATCAT	alt_5092_fdr	4	2	4	7	9	6	10	3	9	4
CAATACACTTCTCGCT	alt_5092_fdr	152	127	129	110	143	103	153	91	143	88
GAGGCCGAAGAGTGAA	alt_5092_fdr	84	81	90	62	81	52	105	53	81	57
GTCCTGGCCAATCGTC	alt_5092_fdr	1	6	4	5	7	1	2	2	4	4
TTTTCCGTAAGTGCAG	alt_5092_fdr	154	231	195	166	175	183	222	121	246	132
GCTAGTGTAGTTGCGA	alt_5092_fdr	14	24	33	31	34	16	23	26	38	28
ATTCGGGTGTTCGTTT	alt_5092_fdr	6	8	9	17	8	4	7	10	8	12
GCACTGTTTCCAGAAG	alt_5092_fdr	37	49	32	41	44	35	49	43	52	34
TTAATGTATTCTTTTT	alt_5092_fdr	54	50	49	36	64	49	60	40	50	35
ACATATTTGTTGGTCT	ref_5092_fdr	26	24	29	27	43	38	29	26	30	29
TTACATTTTGGGACTG	alt_5092_fdr	53	76	53	56	56	48	67	54	71	49
AGTATACTTGCTAAAC	alt_5092_fdr	6	3	2	1	5	3	8	5	4	6
TTAAGCTCTTCTACGC	alt_5092_fdr	15	11	21	22	11	16	15	5	22	13
ATCACCGAGAACTTAC	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
CATGCCTCTATCTCTC	alt_5092_fdr	15	11	13	11	10	15	15	10	12	12
ATTTTCATCCTTGCAC	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTAGAGCGACTCG	alt_5092_fdr	46	53	53	42	54	48	69	17	42	37
GACGCATGCACCTTTA	alt_5092_fdr	81	80	112	71	82	69	96	76	92	52
GTGATGGGTACAGGCA	alt_5092_fdr	5	11	14	13	14	10	14	11	18	11
TCTGTTATATACCTGT	alt_5092_fdr	7	7	5	5	12	3	6	4	3	6
ATTCCGCTTTCCCCGT	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
TACGGATGCCTCTATT	alt_5092_fdr	33	47	38	31	23	32	31	28	34	31
AAACTTGGTTTCCTTG	alt_5092_fdr	12	16	18	13	11	17	22	14	21	14
CGATACGTCTATCGTG	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGGACCTTTTTT	alt_5092_fdr	1	1	3	0	1	3	3	0	2	1
GCTTCCCCATGTAATC	alt_5092_fdr	52	68	48	58	87	48	84	48	64	55
AAGATGGGACTCGCTC	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGTTCATTGTGTA	alt_5092_fdr	18	16	10	14	30	6	23	15	26	9
ACTCCGCGATGGGGTT	alt_5092_fdr	16	10	21	9	16	17	16	17	14	13
TAAGGCTGACGGATGG	alt_5092_fdr	13	12	19	23	9	19	14	6	13	20
TCGTATACGTATTAGC	alt_5092_fdr	62	92	74	89	109	67	97	55	98	61
ACTTGGTCGCTTCCAA	alt_5092_fdr	55	60	69	57	89	44	72	50	67	57
TTTCACCCGGGCATCG	alt_5092_fdr	11	12	13	20	15	10	14	15	10	3
TGGAGAATGGCGTTCA	alt_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGATCATAACCGT	alt_5092_fdr	154	177	206	153	202	140	220	145	217	131
CCGCAGTTTAAAATCA	alt_5092_fdr	139	228	163	172	192	174	254	148	237	121
AGTCTACTTGCAGCGT	alt_5092_fdr	19	26	22	16	24	23	26	12	25	17
CGCGCAGGTCGTTATG	alt_5092_fdr	15	33	26	17	31	22	21	23	31	20
TTCTCCGATTTTAAGC	alt_5092_fdr	121	139	131	102	181	112	178	120	177	114
ACCTGCTAGCACATTA	alt_5092_fdr	105	171	122	115	129	95	163	97	191	89
CGGAGCGGTTGTAATC	alt_5092_fdr	3	12	10	8	1	2	2	4	5	3
GTGGGACAGGGTCAAT	ref_1105_upstream	10	17	20	14	18	15	21	18	22	19
GGGTGCGTCCGCGTGA	ref_1105_upstream	11	8	12	2	6	8	9	6	3	8
TCGCGCCCGTGTGACT	ref_1105_upstream	74	91	91	105	87	89	71	75	80	85
GTGTCAACAGAGCACT	ref_1105_upstream	9	9	15	1	15	6	14	3	4	3
TCTTTATAGGATTAAT	ref_1105_upstream	53	49	66	61	47	66	44	78	58	61
CAATATATCTTCATGT	ref_1105_upstream	22	22	19	18	22	26	19	21	33	19
TTGTGCAGTTTATCTG	ref_1105_upstream	3	10	8	6	11	10	11	8	9	8
GGACATACGCAGGTTG	ref_1105_upstream	24	25	30	19	27	24	31	21	26	19
CACAAATGCTTTGCAG	ref_1105_upstream	24	22	40	26	29	27	28	23	32	26
CAGGGCAATTGCCCAT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
TTCAACCCAGATACTG	ref_1105_upstream	92	103	129	86	101	103	101	98	99	87
TGCCCTCGGTGGGCGT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
GGTATTGCCGATTAAT	ref_1105_upstream	35	38	43	48	31	37	35	42	36	29
CACTAGGTGCTGCCCC	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
GCATGTTAGCCTCTTT	ref_1105_upstream	21	30	39	34	42	40	30	26	34	26
TAGGCACGTCTTAAGG	ref_1105_upstream	10	12	10	13	10	6	11	16	13	14
ACTCCGATATGCGTCC	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTACTTTTTTGAT	ref_1105_upstream	21	21	16	19	22	26	20	20	13	10
TCGTGGGATTATCTTT	ref_1105_upstream	8	13	12	10	6	8	18	13	12	13
TTTTATACAATACATA	ref_1105_upstream	28	32	31	23	37	29	38	34	48	27
TCTAAGGAACTATGCC	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCTTTTACTTATT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
TCATCGAACGTACGCT	ref_1105_upstream	60	78	71	79	84	62	88	73	81	65
CTAAACAATGAGTGGG	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
CATCGTCTATGGCATT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
CATAGTTCGCTCTTTT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
CGTATAGGTTGCTGTT	ref_1105_upstream	8	9	11	10	12	17	14	20	19	14
TCTTTCATGAATTGGG	ref_1105_upstream	7	6	5	16	17	14	7	8	15	7
CTCGAGCGCAACACTT	ref_1105_upstream	14	23	14	18	10	18	11	13	19	19
TTCGTCTATCTCGTTT	ref_1105_upstream	51	55	63	41	58	61	55	34	45	39
TTTAGTAATTTTAACA	ref_1105_upstream	5	8	5	2	12	3	6	4	4	7
GCATTCCACCATGGGT	ref_1105_upstream	11	22	18	21	22	15	28	27	19	18
ATTTTCAGCCGTGTAC	ref_1105_upstream	75	126	74	53	110	57	125	44	146	70
AATTCAAGTACTATCC	ref_1105_upstream	36	28	47	39	46	33	39	38	42	49
TGGTTTATGTCTCCTG	ref_1105_upstream	76	88	108	72	76	76	84	89	83	67
CGAAGGAGTACCGACC	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
CATGCGCTGATCAAGG	ref_1105_upstream	5	5	5	6	7	4	7	10	7	4
TAGTTGATAACCGCAT	ref_1105_upstream	15	36	19	31	15	27	20	23	17	11
CTCACTCATGGGTGTA	ref_1105_upstream	16	17	17	12	18	17	5	23	13	12
ACGGAGTCTAGGATAA	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
TCTATGCACTAGACGT	ref_1105_upstream	61	52	57	51	51	37	67	47	60	38
TTAGTCCTAGGTGTTG	ref_1105_upstream	19	27	24	15	22	11	14	15	25	14
TTTGGTTCTGAGTGGT	ref_1105_upstream	10	16	13	10	12	6	10	7	12	11
CATTATCCCCTGTCAG	ref_1105_upstream	28	43	35	23	30	19	51	23	41	32
TCCACCCAGGGTTTAT	ref_1105_upstream	28	64	43	29	48	32	48	34	56	24
CAGTTGCATATGGATG	alt_1105_upstream	68	71	57	49	81	53	75	47	66	37
GCATCTTGTGATTTAG	ref_1105_upstream	87	87	88	82	93	61	86	69	90	55
CTGGGTTAGCGTTATT	ref_1105_upstream	8	10	4	6	7	8	5	4	5	8
TGCGTGAGCGTAAACG	ref_1105_upstream	17	30	33	16	26	22	20	25	18	14
GTATACTCACTTATGA	alt_1105_upstream	90	69	97	57	92	63	105	61	95	82
CATAGTTCGTTGCGTT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTGTCTTGACAAA	ref_1105_upstream	3	3	1	2	4	2	2	0	2	2
AAACACGGGGAATTTC	ref_1105_upstream	5	8	14	8	4	5	4	6	4	5
CGTCGGCTCCGGGCGC	ref_1105_upstream	29	22	38	26	22	30	14	19	28	21
CTTAGTAAGCACCCAG	ref_1105_upstream	1	0	3	0	0	0	0	0	0	1
CTCCCTCGGTCGTTTA	ref_1105_upstream	19	264	27	23	283	15	296	22	256	30
CGGTGTGGAAGAGGGT	ref_1105_upstream	35	27	42	29	25	28	33	37	28	25
CTTTGTATCACCGAAT	ref_1105_upstream	15	18	9	11	10	13	12	21	22	16
CCGAATCTACTCATGG	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
TGCACTGTTCATCAAA	ref_1105_upstream	22	26	20	38	18	13	26	25	25	14
CCATTTTTGTCTCCCG	ref_1105_upstream	33	27	49	42	50	34	36	21	20	30
TGGTCTAGTAATACGG	ref_1105_upstream	20	32	34	22	28	16	41	21	28	28
TGCATATTTACGTCAC	ref_1105_upstream	10	5	14	8	9	5	12	8	9	6
CTCCCTTTTACAGAGA	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTCCTATTTGTCG	ref_1105_upstream	11	9	14	2	6	12	3	7	12	8
TGTTTAGGAGGGGGCT	ref_1105_upstream	0	0	5	5	7	3	0	4	3	4
TCTGTTGTTAACGCTT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
ATATTCTTTTGGTCTC	alt_1105_upstream	45	57	45	48	49	43	53	40	50	47
ACAATAGAGGTCAGTA	ref_1105_upstream	94	71	71	71	91	93	112	89	100	74
TCGGGTTAGGCTGGTA	ref_1105_upstream	5	5	6	6	6	3	2	2	4	2
GGATACTCCTTTTGGC	ref_1105_upstream	45	43	46	52	48	28	56	36	62	38
ACTGTGATCGTTGTTT	ref_1105_upstream	38	36	42	30	29	18	35	22	30	24
GCTTTTTACATCCGGT	ref_1105_upstream	62	52	63	51	67	50	61	53	52	50
TCGTTGATTAAGGCAG	ref_1105_upstream	3	1	1	3	5	8	0	2	5	4
GCACAGCAGCTAGCCG	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
CTTCAGAGAAGCAACA	ref_1105_upstream	34	37	47	28	48	33	37	32	25	18
CTTTTACTCTGTCTCC	ref_1105_upstream	10	6	2	8	1	9	5	3	1	7
ACTGTCGGACTATTGG	ref_1105_upstream	7	8	12	8	10	12	9	5	12	7
GACCTTTTCCCCGTAC	ref_1105_upstream	13	44	16	23	46	16	54	14	38	16
GCCACAGCTCGCATTT	ref_1105_upstream	36	59	44	34	68	40	59	45	70	37
TTACTTGCTAAGCTCT	ref_1105_upstream	30	34	49	38	40	38	37	30	51	35
TTATCTGCAGCTTACG	ref_1105_upstream	19	13	28	15	32	23	26	21	20	24
TTTGTCACTTTTGGTC	ref_1105_upstream	11	8	11	4	7	9	14	7	12	4
GGTAACGAAAGCCGGT	ref_1105_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGGATTGGTTCTC	ref_1105_upstream	17	21	22	18	20	26	31	17	32	11
AGCGGGTACTTCGTCC	ref_1105_upstream	126	101	136	150	140	120	106	105	112	120
TTGGCTATGGTAAACT	ref_1105_upstream	7	8	6	4	6	12	6	5	12	4
TGAAAAGAAGGCTCGT	ref_1105_upstream	55	63	79	81	75	71	70	52	73	62
GGGATACTGATTGGTC	ref_1105_upstream	23	32	22	14	15	22	16	22	26	13
TTTTTGTCATTCTGAG	ref_1105_upstream	25	31	29	16	42	34	33	21	29	22
TATATTCTAATATCAC	ref_1105_upstream	13	11	14	12	4	10	10	12	9	10
GTTCACTGTTTTAATG	alt_5876_new	44	24	24	34	35	23	30	29	30	33
TCTGGGCTAAGTGTTT	alt_5876_new	66	41	73	56	46	59	50	45	62	44
CGCCCATAATGTGTGG	alt_5876_new	15	11	18	21	5	14	12	16	17	13
AGTTTAGGTTCGTTCA	alt_5876_new	0	0	0	0	0	0	0	0	0	0
CGTAGATCGCTTTCCT	alt_5876_new	38	23	33	33	27	42	25	40	41	44
TCTAGTAACCAAATGA	alt_5876_new	55	52	52	59	57	40	57	51	73	44
GTTGGTTTGTACTAAC	alt_5876_new	40	24	33	48	21	31	30	37	24	31
CATATTTTTTAGAGCC	alt_5876_new	124	76	145	134	89	114	102	113	89	97
ATCCAAAGTGAGGTCC	alt_5876_new	113	84	172	162	110	131	136	127	108	126
GAGAATTTCTTATATA	alt_5876_new	82	57	105	102	80	66	77	86	64	69
CAGTTGTAACATGACG	alt_5876_new	18	13	28	16	15	20	14	15	10	6
TCATCAGGGTAAAAGT	alt_5876_new	45	29	46	54	22	52	41	35	40	49
TTCGCCGGAGACCAAA	alt_5876_new	20	19	32	20	23	29	28	18	31	26
CGGTAACTGCCGTGAT	alt_5876_new	73	38	69	64	37	51	55	55	42	51
GCTGGCGCTTCGTTTG	alt_5876_new	0	0	0	0	0	0	0	0	0	0
CCTGTCGGCCCACTCC	alt_5876_new	79	39	112	75	52	87	43	73	51	63
TCAATTTGCTTTTTAT	alt_5876_new	77	54	97	103	68	79	63	79	71	87
CTTATTGCCTACCGCT	alt_5876_new	7	6	17	12	4	13	5	8	9	11
TGTCCTTCTCCACGTT	alt_5876_new	69	51	91	89	54	76	52	67	54	66
TGTCGCAAGAAGCGCC	alt_5876_new	54	63	93	83	53	87	53	65	69	88
ACTAGTTTTAGTTTGA	alt_5876_new	0	0	0	0	0	0	0	0	0	0
GAAAGCTCACCGCGTG	alt_5876_new	0	0	0	0	0	0	0	0	0	0
CAAATCGTGACAGCGT	alt_5876_new	0	2	2	0	2	1	1	0	2	0
GCTTGTCAAGGCTTGT	alt_5876_new	94	62	104	97	58	87	51	99	71	74
CTCGCGGGGACGCATC	alt_5876_new	37	19	34	27	27	42	25	36	23	31
ATTACTATTGATCATG	alt_5876_new	83	75	95	54	47	56	52	69	53	79
GAGGTATTGGTGGTCT	alt_5876_new	0	3	2	4	0	1	0	3	2	2
TATACTTTTTCCGTCC	alt_5876_new	0	0	0	0	0	0	0	0	0	0
CATCTCGTGAATTCAC	alt_5876_new	44	34	42	33	25	34	20	34	30	28
GTAACTTATCCGGTTG	alt_5876_new	183	157	198	195	128	158	158	150	144	154
TCATAAACTCCTTAAT	alt_5876_new	67	38	84	75	38	63	44	70	71	63
AACAGCAGGTCTATCC	alt_5876_new	83	62	73	68	49	66	52	73	53	51
GAAACGCCCAGCTCCG	alt_5876_new	0	2	0	1	3	1	3	4	4	2
ACACTTGGTAATAGTA	alt_5876_new	0	0	0	0	0	0	0	0	0	0
TTAGGAATGCATGTAT	alt_5876_new	22	16	13	25	13	19	22	19	13	16
TCTCTCCCTCGATGTC	alt_5876_new	8	28	14	7	34	7	34	6	44	12
CGACCTTCCACGTAGA	alt_5876_new	0	0	0	0	0	0	0	0	0	0
TAATCGTACAACTGCA	alt_5876_new	43	37	49	69	27	39	36	59	21	51
CCCTGGCCACCCATTT	alt_5876_new	124	80	131	138	81	115	82	102	76	102
ATCACGATTAAACTCT	alt_5876_new	0	0	0	0	0	0	0	0	0	0
CTCTGCGCTAGTCAGG	alt_5876_new	9	7	25	15	7	20	9	14	12	6
CAATCGATCCATATAG	alt_5876_new	37	51	26	36	76	34	85	28	82	27
CTCGTAATCGACGGGC	alt_5876_new	15	17	31	29	21	19	32	21	20	25
CGACGGGATCTTCATC	alt_5876_new	0	0	0	0	0	0	0	0	0	0
CACTACGATCTGAGTG	alt_5876_new	0	0	0	0	0	0	0	0	0	0
AGCCACGGGTAGCATA	alt_5876_new	60	55	91	75	72	78	59	63	72	57
CTCACACAACTCTGCA	alt_5876_new	414	327	536	437	408	452	425	451	390	414
TTTTTTTCGGGACTTG	alt_5876_new	41	27	38	25	31	30	22	24	22	33
CGATATCATGTCGCTG	alt_5876_new	388	215	502	431	241	319	244	374	250	353
GGTTCCATCCCGCTAT	alt_5876_new	56	38	60	52	54	42	37	40	42	58
TTTTTTAGTTTGATTC	alt_5876_new	70	48	89	73	61	64	38	79	51	42
CGCTTTCTCGGATTTA	alt_5876_new	14	17	35	28	26	26	20	19	28	20
CTGCTCTCCGTGGTAT	alt_5876_new	79	92	98	94	105	94	121	88	132	74
CATAGAGCTTCCTTTC	alt_5876_new	0	0	0	0	0	0	0	0	0	0
TTGCTGAAGGCTCATT	alt_5876_new	15	14	29	31	21	26	14	25	27	19
TAATGGGTCTGGTCAG	alt_5876_new	0	0	0	0	0	0	0	0	0	0
GGGGAGTCTTCGGAAC	alt_5876_new	0	0	0	0	0	0	0	0	0	0
GGTCAGAATAGGTGCA	alt_5876_new	0	0	0	0	0	0	0	0	0	0
CCTAACTTCCCACTGT	alt_5876_new	117	98	134	128	103	100	99	124	126	107
ATACGGGATGATTCCT	alt_5876_new	0	0	0	0	0	0	0	0	0	0
GTAGTTCAGTTCCCCT	alt_5876_new	0	0	0	0	0	0	0	0	0	0
TTATCCATTCTTCGGC	alt_5876_new	82	43	89	82	42	70	49	98	69	65
TCGCGTTACTGGGAGG	alt_5876_new	59	66	69	60	48	55	42	56	48	54
ATATACTGAGACACCC	alt_5876_new	20	13	29	20	11	15	16	29	16	31
GGTGGATAACACAGTT	alt_5876_new	0	0	0	0	0	0	0	0	0	0
AGTCGGCTTATCCCGT	alt_5876_new	96	52	107	102	76	96	74	68	77	76
ACCTTTATGGCAACTT	alt_5876_new	375	273	506	471	330	349	345	361	334	362
ACGGCGATATTCTATT	alt_5876_new	53	36	41	46	36	56	30	40	49	40
CGTGTGTTCTATAGGA	alt_5876_new	150	134	174	157	121	166	127	145	138	142
CCCCCGCTATCTCTTT	alt_5876_new	0	0	0	0	0	0	0	0	0	0
GTTGAAATTAATACAG	alt_5876_new	24	24	54	32	28	22	29	27	15	24
TTTCCGCCTTATGCTA	alt_5125_RC	137	124	186	182	168	158	161	148	148	168
CCCAGGTGATTCCCTT	alt_5125_RC	11	18	16	14	10	18	20	14	12	14
TTTCACCGCCTCCTTA	alt_5125_RC	74	95	97	89	86	84	102	80	80	75
TTGGTGCTTTCGTGGC	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TATGCGGTACACGGCT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TGTGTTGTTATAATCT	alt_5125_RC	132	117	159	146	100	136	106	121	124	106
AGAGGTTTTACTATGA	alt_5125_RC	14	14	25	12	15	7	21	15	19	14
GGGATATCGGTCTTGT	alt_5125_RC	27	33	23	25	41	23	31	14	24	23
GTTCATTACATGTATT	alt_5125_RC	27	27	36	41	38	44	49	25	34	35
ACCCATATATCGAGGC	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TTAGGGCCACTCTTGC	alt_5125_RC	53	62	50	62	54	44	49	47	58	35
GTCTGCTTAGTATGGC	alt_5125_RC	106	88	109	101	66	92	99	94	80	94
TAGATTAGTCTGGTAG	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GTGTAATGGGATGGCA	alt_5125_RC	56	52	79	66	84	59	57	64	66	51
GGTTAACCCCTGTGAG	alt_5125_RC	65	54	60	54	38	39	55	41	70	46
GTATGTGCTTTTAGGC	alt_5125_RC	26	30	18	24	31	21	26	19	21	18
CTGGTGATAAAGCCTA	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGCCGTTATGAT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
ATATCATGGCGCGAAT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
CTGGGTGTGCTAAGTC	alt_5125_RC	135	143	170	126	144	91	159	130	134	112
ACGTTGCTGCCGTAGC	alt_5125_RC	6	8	8	7	2	6	2	8	6	6
TGCGGGGTACACTGTT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTTTTATCTAAT	alt_5125_RC	113	118	141	113	127	117	124	138	106	93
TTAGAACTAATCAATT	alt_5125_RC	16	10	24	18	12	14	11	11	15	22
GCGAAGCGCCTGCATC	alt_5125_RC	73	68	66	63	40	57	40	72	59	54
GTAGAATCCTCTAGAA	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
AAGTTTGATTTTAGCG	alt_5125_RC	38	44	38	46	35	35	53	34	53	40
CCGGAAACCACTAACC	alt_5125_RC	94	87	72	80	85	69	80	64	108	72
ACTGGATAACAACGTG	alt_5125_RC	59	42	60	32	43	34	47	40	63	50
ATAAGCGTGTCTCCGA	alt_5125_RC	114	77	114	130	96	90	89	100	99	87
TATGTGCGGGCGTGTC	alt_5125_RC	3	3	4	3	3	2	5	4	4	1
CATTTAATAGGGACTT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GCTGTCCGCGATCCAT	alt_5125_RC	43	32	58	43	43	33	28	39	46	42
TCTTTCGCACAGTGGT	alt_5125_RC	35	70	74	60	48	52	55	48	74	51
GATATCTGTTAATGCA	alt_5125_RC	51	54	67	58	63	43	58	33	50	32
ACATTCGTGAATTGTT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TATGATATTCTGCATT	alt_5125_RC	13	17	15	18	19	15	15	13	13	18
TCGGTGGCTTTTTGTT	alt_5125_RC	13	7	14	11	12	9	9	6	8	9
CACGGGGGGGTGTAAT	alt_5125_RC	10	10	17	18	26	16	20	19	10	13
TACTCGGCATTATGAG	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
CGCGTGCGTTTTCAGC	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GATTTCTAGCTGCCGG	alt_5125_RC	126	126	163	126	145	143	122	121	129	108
ATTTGTGGCTCTTCCT	alt_5125_RC	199	134	197	202	155	173	159	173	148	184
GCGTTGCTTCAAACCC	alt_5125_RC	45	30	49	40	33	36	45	44	39	27
CAAATTAATGATAGCA	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GAGTATACCAGTTGAG	alt_5125_RC	10	5	11	5	4	10	8	7	11	12
AAGTTCATCTGTTATC	alt_5125_RC	15	17	18	22	12	11	13	24	14	23
CTCATTGTGTCTGTCC	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
CTTTACTGCTGCCGAT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TTGCTCAGCGGTTTTT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GATACGTCTCCAGGCC	alt_5125_RC	27	24	33	36	29	24	30	18	28	32
GTTAGGAAAGGGCTCG	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GCCGTCACGTACATGG	alt_5125_RC	70	73	86	79	81	79	74	67	75	60
CTCCCCATATGGAGGA	alt_5125_RC	18	24	30	31	20	17	30	18	29	18
GGAACAAGAGTTTATG	alt_5125_RC	8	4	9	4	9	0	2	0	7	6
CGAAGGTCTGTCGTTC	alt_5125_RC	81	71	98	90	60	80	59	61	93	68
ATGAAAATCGATTAGT	alt_5125_RC	51	50	62	62	55	59	49	69	65	49
TGTATTGTATGGGAAT	alt_5125_RC	89	74	138	108	86	82	76	77	86	86
CTATAAACTGCAAGCT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
AATCTACTAGATCTAA	alt_5125_RC	27	19	57	46	33	31	16	37	17	21
GAAAGAAGTCCAATAC	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
AATTACTATTCCGAAC	alt_5125_RC	17	24	28	24	21	31	23	25	19	29
AATCTGACGGGTTAAA	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTTCTTTTCGCC	alt_5125_RC	104	47	124	112	67	105	66	99	62	84
TCTCCGAATTTGAACT	alt_5125_RC	33	40	59	65	40	44	37	41	28	32
CGTCAGTGATAATCAG	alt_5125_RC	71	67	99	48	67	64	86	51	88	62
TGATGTTCCTTATTTT	alt_5125_RC	78	78	91	85	78	81	76	82	93	64
ATTAATTAATCTTAGC	alt_5125_RC	68	68	91	86	78	74	65	74	98	75
TCGTCACGTACTTACC	alt_5125_RC	6	40	6	8	28	4	23	6	30	5
CCCACATACAAATAGG	alt_5125_RC	5	3	7	7	8	6	1	6	6	2
TGCTCACTTTGATCGT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
CTTTTCAGGTTTTTCG	alt_5125_RC	80	91	76	81	77	70	80	68	103	73
TAATAACCGAATTTTA	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
CAACTCCTCACATAAT	alt_5125_RC	61	62	69	69	72	49	100	52	84	64
CGTGTTATGTCTACCT	ref_5125_RC	74	65	92	68	53	64	61	63	72	73
CTTCCAGAAAACTACT	alt_5125_RC	62	58	71	84	65	55	90	60	77	49
CTAAGCTCTTTCGGTA	alt_5125_RC	41	44	55	75	64	55	59	57	76	45
GATTTTCTATATGGGC	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TAGCTTACGCCTTAAC	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TTTGGACCGCATATCT	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GTTGTCTGCCTGGTAG	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
CCCATACAGAGTTGCA	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
GATCCGGAGGCGATCG	alt_5125_RC	0	0	0	0	0	0	0	0	0	0
TATTGTACATTCGTTC	alt_5125_RC	5	4	7	8	6	3	3	8	4	5
GCCACCTTACTTGGCC	alt_5125_RC	54	38	46	37	57	36	44	37	36	42
GTCAAGTAAATCGATA	alt_5125_RC	53	47	74	62	43	66	56	39	59	55
TCGGAGCTTAGTGTGC	alt_5125_RC	14	13	17	11	9	19	13	8	11	21
GAGCTAGATTTGCCCG	alt_5125_RC	196	173	262	240	146	181	170	230	211	153
TCAGGCCATGGTCCGG	alt_5125_RC	58	64	74	71	44	65	59	58	56	63
AATACGTTTTTAGAGA	alt_5628_new	4	5	1	1	14	2	5	1	2	2
ATGTGGCTGTATACTG	alt_5628_new	7	25	8	4	17	12	20	14	18	6
GACAATAACACCTCCA	alt_5628_new	19	29	29	14	29	13	28	11	22	13
CGACCAGCAAGGGTCT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
TCAGGAGCCCACATCC	alt_5628_new	26	55	44	38	55	25	52	25	65	27
CAAAGCTGGGAATGTC	alt_5628_new	41	71	46	41	92	45	84	22	101	34
TCATCTATGCCTGTTA	alt_5628_new	5	6	3	2	5	2	12	5	4	5
TTAGCCCGTGAGAGCC	alt_5628_new	45	84	46	49	94	32	100	50	89	38
GGCATCCCACGGTACC	alt_5628_new	0	0	0	0	0	0	0	0	0	0
GCTGAAGCGCTTCGAC	alt_5628_new	6	12	10	6	8	6	3	3	14	5
CGATCTTTCCTGAGAT	alt_5628_new	9	15	13	7	25	7	21	7	14	4
TTCGGTATTGGGTTCT	alt_5628_new	4	8	5	3	4	2	9	5	9	3
CGCCCTCTGTTATCCC	alt_5628_new	53	101	54	40	107	50	121	48	98	36
AAACTCAGCACGTATT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
ACATCATCTCCCGCAT	alt_5628_new	4	3	1	6	14	1	9	4	11	7
GTCGCTCGGACTACGT	alt_5628_new	13	19	10	8	7	5	12	6	11	10
TTATAGTAGGATGTCC	alt_5628_new	9	16	9	6	12	6	12	6	13	2
GCCTATGTGCTGTTCA	alt_5628_new	21	37	30	17	51	16	58	21	63	13
CGGTCTATTGGGATCC	alt_5628_new	0	0	0	0	0	0	0	0	0	0
ACGAATTTGCCCGCAG	alt_5628_new	16	30	14	13	29	17	21	14	19	14
GGATCCTTTAAGGACT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
ACGGCAGCACTCAGCC	alt_5628_new	0	0	3	2	1	2	0	0	2	0
ACACCCGTTATTGTAT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
ACTTATCGGGGAGGTG	alt_5628_new	5	10	7	6	11	10	14	10	16	5
GTTTGCCCTTGCTTAT	alt_5628_new	27	64	44	33	45	38	53	25	48	43
ATTCCGGCATGTCTTG	alt_5628_new	7	10	12	4	11	5	13	4	12	3
GACCTTTAGGCAACAA	alt_5628_new	0	0	0	0	0	0	0	0	0	0
CTAGCCTTATAATCTT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
CCATGCGACTGGACAT	alt_5628_new	9	25	18	10	22	13	31	14	25	13
TGTAGATTGAAGCATC	alt_5628_new	2	11	2	1	7	5	7	4	6	2
AAATTTATATTTTCAT	alt_5628_new	21	21	13	8	25	11	42	20	23	14
TGAGTTATAACCGGTG	alt_5628_new	2	8	4	1	11	1	12	4	8	3
TTTTTCACAGGGACGC	alt_5628_new	11	53	28	20	39	23	56	21	42	19
GTATTTCTGGGCCCTA	alt_5628_new	0	0	0	0	0	0	0	0	0	0
ATTGTTTTTCGTACCC	alt_5628_new	4	10	5	3	5	1	2	3	7	3
TATTTGGAAATTGATT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
ACTTTTTCTGGGTCGG	alt_5628_new	20	14	33	26	19	27	11	28	24	37
CCCGATGCGGAATACA	alt_5628_new	0	0	0	0	0	0	0	0	0	0
GGCAAGATCATCAGTC	alt_5628_new	0	0	0	0	0	0	0	0	0	0
CGCACGGATATCTAAT	alt_5628_new	2	5	2	4	5	1	7	6	2	2
GTAACGGAACATAGCT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCCCCTGAGGT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
CTTACTATAGAGTTCG	alt_5628_new	0	0	0	0	0	0	0	0	0	0
GGGTTAGCGCTATTAT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
TATACAATACGAAATT	alt_5628_new	19	41	20	19	37	23	42	21	48	16
ATCCCACAGGCACACT	alt_5628_new	5	19	7	3	11	6	22	6	17	9
AGAATTCCGCACCTGC	alt_5628_new	39	88	35	38	69	28	86	28	77	26
TGTAAGTCCCCCAAGG	alt_5628_new	14	21	20	17	24	13	37	15	31	15
TAGGTTTTCGTTTATG	alt_5628_new	2	3	0	2	2	1	1	1	2	0
TTGCGGAGAGCTGAGC	alt_5628_new	0	1	0	0	1	4	2	2	2	1
CAAAAGTTCGTACGAG	alt_5628_new	0	0	0	0	0	0	0	0	0	0
TCGATGCCATGCTGCT	alt_5628_new	16	34	29	18	30	10	29	17	43	19
GATGTCACCCTGAAGC	alt_5628_new	0	0	0	0	0	0	0	0	0	0
AAGCCAACCCTTATGC	alt_5628_new	0	1	0	0	5	2	3	0	3	1
CACACATCGATCAACG	alt_5628_new	20	25	14	21	34	14	32	15	36	15
CCCGCTCAATGAGATC	alt_5628_new	0	0	0	0	0	0	0	0	0	0
TCCCTGAGAATGCGTG	alt_5628_new	0	0	0	0	0	0	0	0	0	0
CATATATAGACATTTC	alt_5628_new	6	8	13	1	10	3	19	2	11	1
CGGGATTGATCGGGGG	alt_5628_new	0	0	0	0	0	0	0	0	0	0
CAGGATCTCTCCTCCC	alt_5628_new	2	5	1	1	6	3	4	4	5	0
TTCGAATGGCCTCGCC	alt_5628_new	12	18	11	7	20	8	29	11	18	10
GGCATTGCTCCCAGTT	alt_5628_new	0	0	0	0	0	0	0	0	0	0
GCCCTGTAACTGGTTC	alt_5628_new	4	3	9	5	14	1	6	4	11	9
ATCCGTAGCTCCATCA	alt_5628_new	0	0	0	0	0	0	0	0	0	0
AGGGGTTGTTACGTAT	alt_5628_new	16	18	19	11	18	10	23	13	26	9
TGGTCTGGTTCATCCG	alt_5628_new	0	0	0	0	0	0	0	0	0	0
GCGTGCTATTTCGAGC	alt_5628_new	5	19	17	5	10	10	17	11	22	5
ATAGTTCCACATTAGT	alt_5628_new	12	34	31	20	40	14	45	18	40	15
GCGTTCCCCTAGCCGA	alt_5628_new	0	0	0	1	0	0	0	0	1	1
AGGAGGGCATTATGGG	alt_5628_new	69	99	72	56	112	58	105	77	131	45
CGGGATATGGAGTATC	alt_5628_new	0	0	0	0	0	0	0	0	0	0
TCTTGTATTGGGTGCT	alt_5628_new	4	10	9	15	23	15	18	12	23	12
GCTCTCACTTTAGCTA	alt_5628_new	0	0	0	0	0	0	0	0	0	0
ATCCCGGCACATATGA	alt_5628_new	36	142	54	43	129	39	133	38	139	36
TTCTGGAGCTAAAGAG	alt_5628_new	0	0	0	0	0	0	0	0	0	0
GTAGAAGTTTGCGCTT	ref_5628_new	4	18	8	10	23	13	12	3	9	1
TTGTTCGCAGGCCGTC	alt_5628_new	6	8	9	4	9	0	12	6	14	4
GTCCGGTCAAGCTTGG	alt_5628_new	62	82	53	50	87	36	98	41	92	38
TCGGTGAAGTTTCCGT	alt_5631_new	156	112	166	152	81	139	97	133	103	116
CTCATGGTCCCTGCGT	alt_5631_new	0	0	0	0	0	0	0	0	0	0
CCGGGTTATATGCGTT	alt_5631_new	92	81	115	108	81	112	101	106	62	71
GTGCAACTATTGTGAA	alt_5631_new	25	18	21	26	23	14	16	17	17	13
GTGGAGTGGAGGATTG	alt_5631_new	84	80	106	70	52	84	65	72	91	78
TCTAGTCGGATTAGAC	alt_5631_new	104	98	118	105	89	98	94	89	87	72
GTATGAATTCCACTCC	alt_5631_new	17	11	14	6	18	9	12	8	25	11
ATGCCTGACTGGATGG	alt_5631_new	0	0	0	0	0	0	0	0	0	0
AAGATTACCACCGGCC	alt_5631_new	59	21	68	57	38	44	25	59	24	47
CTCTTTGCTTGCTTTA	alt_5631_new	0	0	0	0	0	0	0	0	0	0
TTAGATTGCGATGTTT	alt_5631_new	23	21	35	20	22	40	28	34	16	25
TGGACCCATAATACAG	alt_5631_new	283	201	339	296	163	282	188	274	184	246
TGCTCGAGTTCGCTCA	alt_5631_new	39	41	47	51	37	46	42	46	37	37
GTTGGCGTAGACAAGA	alt_5631_new	59	38	42	48	33	39	30	30	27	29
TTGCGGGACCTCGATG	alt_5631_new	13	11	27	20	10	21	8	19	17	17
GTTATCGTTCCAATTG	alt_5631_new	16	6	21	23	8	20	7	4	10	10
TCACACTCTTTCACTG	alt_5631_new	0	0	0	0	0	0	0	0	0	0
CAGTCCCATTATTAAG	alt_5631_new	8	3	4	9	0	4	3	5	4	7
AGCGCGGATGACGCGA	alt_5631_new	9	5	11	8	8	9	8	5	17	16
CATGACAGGTTGTGCT	alt_5631_new	0	0	0	0	0	0	0	0	0	0
AGGTCATCGTAGTCCT	ref_5631_new	13	12	21	11	19	19	13	22	11	16
ATTCGCTGGGGCCTCG	alt_5631_new	0	0	0	0	0	0	0	0	0	0
ACGTTAGTTATGAGCG	alt_5631_new	0	0	0	0	0	0	0	0	0	0
TTTTTATAGTAACAAG	alt_5631_new	37	27	59	48	33	47	28	38	33	43
ATTCCGGTCTCTGCAC	alt_5631_new	13	7	25	21	15	10	13	11	13	8
CGTGATGTGTAAGGCT	alt_5631_new	0	0	0	0	0	0	0	0	0	0
CTAGGTCGGGTTCGTG	alt_5631_new	85	56	77	56	57	55	53	70	78	46
TTGTCGGTTTTAAAGC	alt_5631_new	0	0	0	0	0	0	0	0	0	0
ACGCACGAGCTCCTTT	alt_5631_new	41	23	31	32	14	14	20	33	23	24
TGTATTGTTATAGAGG	alt_5631_new	75	70	95	76	79	78	66	86	60	81
TGCACGCGACCCGTTG	alt_5631_new	0	0	0	0	0	0	0	0	0	0
ATTATAATTGTATAGA	alt_5631_new	21	12	21	14	12	15	10	9	11	14
GGACGTAAAAATTCGT	alt_5631_new	18	15	26	31	18	22	10	12	8	24
CGTATCAGGGCGAGCA	alt_5631_new	48	28	69	56	46	52	47	44	40	41
CCCAGGTACCTCTGCC	alt_5631_new	0	0	0	0	0	0	0	0	0	0
TTAGCGCTCCATTGTG	alt_5631_new	62	48	58	60	40	82	38	51	29	54
CATTGGCTTTAGATTG	alt_5631_new	49	30	50	46	21	43	29	41	36	44
TCCTCAGTCGTACGCT	alt_5631_new	0	0	0	0	0	0	0	0	0	0
TTTAGGATATTAGCGG	alt_5631_new	172	86	177	157	103	132	124	116	114	134
TCACTTAGACTTAGGC	alt_5631_new	61	28	73	48	52	41	37	58	39	53
GTTTGCGTCAGCTCCT	alt_5631_new	122	70	138	112	70	127	77	128	88	96
GATTTTGACTGTTCGC	alt_5631_new	26	23	30	33	21	21	21	18	22	16
TCTTCAGGCAAGTTCG	alt_5631_new	141	115	198	145	119	153	121	156	128	144
TCACCCTTTACACCTC	ref_5631_new	131	122	183	137	110	171	103	100	123	130
TAAGCATGGCATATAT	alt_5631_new	0	0	0	0	0	0	0	0	0	0
TTTTGTTGAGTTAAGG	alt_5631_new	139	106	178	136	89	128	88	167	104	136
TCTTAGTTCGTGGTAG	alt_5631_new	119	69	130	121	92	124	107	111	114	76
ATGGGCATAATGTCCC	alt_5631_new	12	10	11	20	12	12	6	19	13	9
TGATCCTCTAATTCGT	alt_5631_new	168	97	200	173	118	162	104	133	103	170
AGAAATGTACACCAGG	alt_5631_new	31	26	32	37	27	34	21	23	19	28
ATGGCCTTAGTAGCCC	alt_5631_new	86	39	102	71	42	64	43	54	64	55
TTTTGATACTCAGTAC	alt_5631_new	0	0	0	0	0	0	0	0	0	0
AAATCATCAATTAACT	alt_5631_new	30	19	44	23	19	18	26	27	12	28
TTGTGATCCGAATATG	alt_5631_new	270	216	380	291	226	277	207	290	273	238
GGAGTGTACACTCTTC	alt_5631_new	126	157	97	93	162	87	153	83	192	93
ATTAAATACCGTCGGA	alt_5631_new	0	0	0	0	0	0	0	0	0	0
TGCCTCCCGTAGGCCG	alt_5631_new	0	0	0	0	0	0	0	0	0	0
TATGATTATATCCTTT	alt_5631_new	9	4	8	11	4	3	5	10	6	8
ATTAACTTACCCCCAG	alt_5631_new	79	61	98	88	70	65	76	84	80	69
AACGTTGCAGTTAGAC	alt_5631_new	142	96	164	143	99	126	104	150	114	125
TTTGATACACCGACGC	alt_5631_new	10	10	16	6	5	7	13	9	1	7
CGGTTTTTGATTCGAG	alt_5631_new	50	34	52	43	32	47	39	48	37	31
TTTTGACTTTGGGCTG	alt_5631_new	680	591	829	723	569	663	586	651	578	583
TGTTTTCGGTACAGTT	alt_5631_new	19	19	25	34	13	22	17	28	18	11
ACACATCGGTACTCGG	alt_5631_new	67	59	78	78	43	74	46	76	41	65
TTCATGCCTATTTGGT	alt_5631_new	0	0	0	0	0	0	0	0	0	0
GTTTAGGACGCCGAAA	alt_5631_new	21	14	19	30	14	12	14	16	8	21
CTTTGTTCTGTTTATT	alt_5631_new	46	27	65	49	33	48	35	45	45	31
GTATTCGATTCCGCAA	alt_5631_new	29	17	31	24	13	27	21	27	10	21
CACGGCTGCGCGAACC	alt_5631_new	11	5	4	8	3	14	5	9	2	8
TCTACAGGCGCTTCAA	alt_5631_new	19	8	14	28	14	27	20	11	7	16
CAGTAGTTTGCTGGGT	alt_5631_new	33	38	49	61	52	54	41	30	44	39
TTTCTGATTTACTCAC	alt_3594_RC	4	6	6	1	12	3	12	5	4	3
GGCTCCGCAAGATGCT	alt_3594_RC	27	26	37	28	30	30	43	26	38	30
CAGTCCTACTCGTCCC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
AGTCTGGCTCCAAGCG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTCGTATCTTAG	alt_3594_RC	67	89	81	81	90	54	112	61	92	66
AGTCTCTTCTGGACAC	alt_3594_RC	20	32	30	30	35	29	34	19	43	23
TAAGTTCCATTGACTC	alt_3594_RC	12	17	7	12	16	15	15	10	17	13
GGCTCTGCTTGATCAT	alt_3594_RC	57	101	94	57	102	76	75	75	80	71
TGCTTCAATGGTGATC	alt_3594_RC	4	6	10	5	2	5	4	4	6	5
ACTATAGTCTGGCCGC	alt_3594_RC	24	28	23	27	28	20	21	18	26	23
TGATATTTAGCTGTAC	alt_3594_RC	21	14	20	24	25	14	17	15	14	22
TTGGACGGTGGCCTAT	alt_3594_RC	30	31	32	20	35	39	30	16	30	32
TATCAGTCGGTGCTTG	alt_3594_RC	26	24	27	18	32	21	27	21	39	30
GTCTAGAGTCAAAGAC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GTTATTACCTGCCCTA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TTCAATGTCATTTGAA	alt_3594_RC	49	63	46	34	76	55	66	43	83	53
ATGTTAGCCCGACGCA	alt_3594_RC	35	38	41	37	34	18	39	37	59	39
GACGCAACCTTACTGC	alt_3594_RC	88	130	99	94	143	90	127	90	152	85
GTGAGTTCGTGCACGT	alt_3594_RC	25	41	19	21	27	25	36	12	44	24
ACTTTTTGTAGCCTTG	alt_3594_RC	10	13	5	10	11	8	10	5	12	6
TGAACAACGGTCTATG	alt_3594_RC	17	38	25	17	32	15	36	14	25	10
ACGGTGCGGAACGTTA	alt_3594_RC	312	420	360	325	453	279	414	290	501	269
CGTTGTGCCGTTCATA	alt_3594_RC	36	81	42	53	107	46	76	43	103	41
AATACTCCGATCATGG	alt_3594_RC	49	52	40	41	53	47	56	40	82	46
GTGGGCCCACTATTGT	alt_3594_RC	43	54	56	34	47	43	53	40	41	29
ACTAGAGCGAACCCAC	alt_3594_RC	92	104	90	89	100	64	90	69	97	75
GCTGACTCATAAACTT	alt_3594_RC	22	26	42	31	29	27	39	23	41	30
GTTTCGATGCTTCTCG	alt_3594_RC	13	17	16	27	14	20	19	15	16	24
GACCCTCTAGTTTATG	alt_3594_RC	17	21	28	24	33	38	35	28	36	16
TCTTTGTCTCGGGTTC	alt_3594_RC	31	13	24	21	28	26	30	16	39	26
TTACTGTAGACATAGG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TCCTTCTTCAAACTGG	alt_3594_RC	141	201	177	166	189	130	191	127	212	139
GAGGTGGGAGGCTTGA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CGAATTGCATGATTTT	alt_3594_RC	12	15	14	23	24	14	21	11	17	13
GGTCCCTCGTCTAACC	alt_3594_RC	10	23	22	17	19	9	28	11	21	3
CGGCTACAAGCCATAA	alt_3594_RC	65	116	114	83	126	70	128	79	129	61
TTACGGTCACTACTGG	alt_3594_RC	33	46	30	34	42	41	44	31	39	27
ACAAGAGTCGACGCAC	alt_3594_RC	8	7	4	9	9	5	7	8	9	3
CCTAATGTAGCCCTCC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
ATTTTGAGACGGGTGC	alt_3594_RC	41	55	42	44	61	50	67	34	62	40
CTTAGGCGGATAGGCA	alt_3594_RC	110	131	122	81	121	94	125	72	123	92
TGTATCATCACTGCAT	alt_3594_RC	33	57	45	33	41	44	63	26	58	32
GGGTAGACCCCGTTGA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
AAATTGCGTAACACGG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
AATCAGCCTAACGTCG	alt_3594_RC	3	31	2	7	17	7	23	12	23	7
ATCAGTTTTTGACACT	alt_3594_RC	39	39	23	27	40	19	32	17	48	31
CTATGCTCTATACGGG	alt_3594_RC	48	73	71	59	70	48	79	47	62	51
CAGTTTAAGTACATGT	alt_3594_RC	43	54	34	39	49	24	51	41	59	37
CGACTTTGCGTTGCTT	alt_3594_RC	13	26	25	25	21	10	20	14	20	12
TTGATCATTAGTATGA	alt_3594_RC	66	67	90	59	65	43	77	62	74	53
ATTAACTATTAAGTCG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CTGTGTTCACATTCCT	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GACCCATTGCCACAGC	alt_3594_RC	18	31	28	25	37	20	34	27	27	20
GTGTCATGTTTGCATC	alt_3594_RC	8	4	2	1	4	0	3	2	3	2
ACATGATACCCTTTTT	alt_3594_RC	47	55	65	55	48	43	47	28	53	38
GATTTTTACCGAACAG	alt_3594_RC	26	50	39	26	44	25	43	19	47	27
CATGCAATAAGCTTTG	alt_3594_RC	120	180	183	138	187	145	166	123	173	123
AAGCCTAACTTAGATT	alt_3594_RC	3	14	6	7	10	6	9	5	11	4
CCCTTTCTATGCTCCA	alt_3594_RC	43	47	39	30	43	27	39	39	41	25
AGTAATCCTTAACCGT	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
ATCTATTTTTACTTGG	alt_3594_RC	6	5	8	6	4	3	3	5	7	4
TCTACTTTAGGTATTC	alt_3594_RC	0	0	1	1	1	1	1	0	1	1
TACGCCCCGATTCCGT	alt_3594_RC	55	72	52	46	70	46	75	46	84	36
TTAAGTTAATTTCCCA	alt_3594_RC	14	18	16	15	18	19	19	11	18	8
AAATGTGCCACTATAA	alt_3594_RC	2	9	4	2	10	3	6	3	5	1
ATGTCGAGGCTATTTA	alt_3594_RC	26	20	33	19	17	20	25	9	21	18
GGCCAATTAAGCTCTC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
ACACATCCGACCACAC	alt_3594_RC	80	139	97	88	123	94	114	71	102	66
CGAACGTCGTATTCCG	alt_3594_RC	100	89	111	73	92	68	106	62	104	72
GATATAGCGTTGACCA	alt_3594_RC	69	110	97	92	127	104	141	96	160	94
GTGCCCGTACATTCGG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTCGACGTGTGA	alt_3594_RC	4	27	5	3	22	9	26	8	22	5
TTCGTTGTAGCCTGCA	alt_3594_RC	37	59	61	56	47	41	89	47	56	42
TGTTCTATCCCCCGCC	alt_3594_RC	13	19	13	10	22	6	17	12	9	7
CGGATTGCTGTACTTC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CGTAGCTCTGACTTCA	alt_3594_RC	66	86	74	72	75	57	82	54	63	49
CCTGAAGTAACGTATT	alt_3594_RC	96	189	132	114	184	109	169	97	171	89
CCCTTCATCGGCTTCC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GGTACGCTCCTATGTG	alt_3594_RC	8	16	11	13	20	13	23	5	22	9
TGAGACCCCGGCTCTG	alt_3594_RC	16	33	28	20	30	18	25	21	25	20
GGGGCTGCCGCCCTTG	alt_3594_RC	13	26	18	16	14	12	21	26	12	11
TTCGCGTGGGCTCATT	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CCAAACCGTTTGTGGC	alt_3594_RC	4	13	2	3	9	0	5	1	22	2
GTGCGAGGTTGTAGCC	alt_3594_RC	5	7	3	2	3	5	4	3	8	6
TGCCTATCGATCGATA	alt_3594_RC	30	32	30	40	38	26	42	35	45	22
GGGAGATATTCCATCG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CTATCCTTGGTTTTTG	alt_3594_RC	73	87	85	78	109	73	114	57	116	71
AACGGCAGTCTATAAT	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTACAGCCCAAA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GGTATCGTTGTACGGA	alt_3594_RC	27	34	32	51	42	37	36	42	37	30
AGATCAATGTTCTGTG	alt_3594_RC	1	0	0	2	1	4	1	6	0	0
TCTCTCGATATTATTC	alt_3594_RC	6	10	6	4	6	3	6	6	18	2
TTTAGGGTATATGGTC	alt_3594_RC	29	24	45	26	31	19	31	28	48	23
TACTGTTGTATTGAAC	alt_3594_RC	0	2	0	0	2	0	0	1	2	1
TCAATGCTACCTGAAA	alt_3594_RC	3	14	10	5	7	8	10	6	4	4
ACAGATCCCTTGTGCA	alt_3594_RC	2	4	2	8	9	0	10	5	5	1
GTTGAAGGATTTCGTC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CTCTCGTTTGGTTAGC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GCCATTTTAACGCTAC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TTCGTGGCTTTCAACC	alt_3594_RC	254	324	303	243	324	269	335	231	319	220
GTCTCTGCTCACATTA	alt_3594_RC	12	17	11	11	19	17	21	12	19	21
CCATAGTGGGTGGTTG	alt_3594_RC	28	36	44	27	40	28	47	21	29	27
GATTCTCGTAGACCTC	alt_3594_RC	9	13	9	17	13	9	24	16	16	10
GGTGCCCAATGCTAGG	alt_3594_RC	5	3	10	7	13	3	5	6	8	2
ACGGTTCCGGAAGTTC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GTAATATAGCTTGTTT	alt_3594_RC	16	29	31	17	17	13	16	18	20	19
CGGTATATTATTAAGT	alt_3594_RC	19	21	17	14	25	14	31	21	26	14
TAGGGATTCGTGCGTC	alt_3594_RC	0	0	0	0	1	0	0	2	0	0
ATGCTTTTATTCAGCT	alt_3594_RC	31	31	31	12	29	21	14	18	26	18
TGACTGGCACGATCTG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CAACAGACCCGTTAGA	alt_3594_RC	5	14	10	6	12	5	8	3	7	5
GTCATACGTTTGTGCT	alt_3594_RC	20	37	26	21	39	18	34	14	30	14
GTTGCCCCCATGTTTC	alt_3594_RC	34	47	44	21	39	25	39	33	43	29
TCTTTCACTATGGCTG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TCCCGCTCTATTTACG	alt_3594_RC	14	24	12	14	15	15	22	12	13	11
GCATCCCGGGAGTTGT	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CGTGCGTATCAGGCTT	alt_3594_RC	40	48	50	38	43	34	47	25	38	25
AACTTCACAAATTTAC	alt_3594_RC	17	45	23	26	33	25	23	23	48	32
TATAGACCATATAACG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
AGAGTATCGGAACTAC	alt_3594_RC	40	52	38	30	50	26	41	35	45	47
AAGTTCACTGGTCCGG	alt_3594_RC	3	9	6	10	12	3	9	7	7	5
CGAACCCGTCTAACGA	alt_3594_RC	22	50	39	34	57	29	64	21	65	24
GTGTGATTCTCCGGTC	alt_3594_RC	86	68	82	69	95	68	81	73	97	56
AGTTCACTTTTATTAC	alt_3594_RC	8	8	12	7	12	13	9	12	7	12
CCGGCATGGGGCATGT	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CTGAAAGCGTTTTAAA	alt_3594_RC	9	9	11	5	14	9	11	6	17	7
GCGCAGTACTTTGGTG	alt_3594_RC	43	61	48	46	81	43	63	47	70	48
ACTACAGCTTAGTTAT	alt_3594_RC	12	21	16	10	30	14	21	16	19	17
CTATTCATCGGGCGTA	alt_3594_RC	96	123	122	104	135	92	148	79	156	98
CCGGAGGCGTCGAGCA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GTTATCCTGCCGACTA	alt_3594_RC	8	18	8	25	10	9	15	11	19	7
GTTTCTTTATTTCTAG	alt_3594_RC	30	31	38	31	24	25	31	31	47	19
TTAATGGTACGGGACC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TAGCGCTGCTTTTAAT	alt_3594_RC	4	12	14	14	15	10	14	9	14	10
AGANTGGCCTTATAGA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TTTGGGCTCCTAGCCT	alt_3594_RC	12	23	23	28	36	14	26	15	39	18
GAGTGATATGAGCGGT	alt_3594_RC	13	23	19	15	18	23	18	13	28	14
TCTGCATATCACGTAC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TCATGCGCCGGTCGTC	alt_3594_RC	40	63	28	37	64	26	66	22	66	21
GCTTTCTCGCATTCAA	alt_3594_RC	18	31	29	14	28	13	23	14	30	14
TTCTCCCGATAACTGC	alt_3594_RC	49	126	62	57	139	43	109	44	136	42
TACGTGGCTTTCAACC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TACAGCAACGTGGATT	alt_3594_RC	7	14	13	8	19	16	22	13	20	8
CTCATTAGCTATGCTC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TCGTAATTTGCACAGC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GAGTTTGGATTTAAGA	alt_3594_RC	56	70	69	55	69	67	70	45	76	55
AATCAGCTGTCGATCG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
AACAGTGGCTCCATGG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
AGTGTTATGGGGTCGG	alt_3594_RC	35	22	24	28	36	27	36	22	44	22
CGTTATTCGGGCTAAT	alt_3594_RC	18	19	18	10	15	21	17	19	22	13
GTCCTTAAATGCGGTG	alt_3594_RC	1	3	0	1	1	0	0	3	2	2
GCTATTGCTATTGTTT	alt_3594_RC	10	18	17	12	19	15	22	11	14	7
TTACTTAACCTTCGTC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TTGTGTATAAAGCTGC	alt_3594_RC	91	112	95	96	96	80	112	80	140	75
TGTGCGCACCGTTTCA	alt_3594_RC	83	131	92	74	132	59	128	72	133	69
CAGTGGAGCCGGACTT	alt_3594_RC	20	28	21	19	19	20	31	22	22	22
ACACTTTCGATACCCT	alt_3594_RC	51	72	64	43	102	58	91	44	109	47
GATCTATTACCACTTC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGAGTCGCACGA	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
CTCGGTTTTGCGCAGT	alt_3594_RC	18	86	21	15	91	26	101	23	99	10
CTGGGGAATTGGTGCG	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TGGACAATGTCCACTA	alt_3594_RC	7	11	13	11	13	5	13	9	11	4
ACGTTAAATACAGAGC	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
TGGCGCTCCATTCTCT	alt_3594_RC	44	53	56	47	47	35	51	41	53	41
ATTGCCATTCCTTGGT	alt_3594_RC	34	48	35	21	31	23	42	29	45	23
GCAGAACAAGTGTGGT	alt_3594_RC	16	23	15	23	24	21	25	11	23	15
AAGAAGGTATACTACT	alt_3594_RC	0	0	0	0	0	0	0	0	0	0
GATGGTGCCGAGACAC	alt_3594_RC	6	11	3	4	14	9	3	5	6	12
ATCGGGCACATGCGTC	ref_1116_RC	7	6	14	6	6	3	4	7	5	5
TCCAGGATGGCTCAAG	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
AGAGAGTGTATTGGCG	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
TTAACGAGTCCCGGTT	ref_1116_RC	11	3	11	8	11	15	11	8	5	9
AGACTCTAGAGATTCC	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
ATATCTGTTGCTCGTC	ref_1116_RC	49	39	53	39	53	36	55	38	53	44
CTTGGTTGCCCAAAGG	ref_1116_RC	103	118	160	116	131	121	139	107	134	99
ATGCGTTGTGTGCAAT	ref_1116_RC	14	5	11	8	4	8	3	2	10	3
TGTACGCCTGTCGAAC	ref_1116_RC	30	27	44	17	38	17	28	31	27	24
CGTTTTCCGATTGGTA	alt_1116_RC	68	45	74	44	59	46	59	50	69	50
TCTTTTCACTAGAAAT	ref_1116_RC	6	15	13	14	13	17	16	16	20	10
TTACCCGTAAACGCTC	ref_1116_RC	72	76	86	65	132	57	113	69	89	67
CTCGTTGGCTAGGCGA	ref_1116_RC	4	10	8	3	19	9	7	9	12	4
GTCTGTCACAAGCGGA	ref_1116_RC	50	53	68	54	45	67	62	43	76	43
CGGACTTCTGAGTACA	ref_1116_RC	29	26	35	46	23	37	41	37	42	37
ACTGTAGTCGAAGGAT	ref_1116_RC	11	13	14	19	5	10	9	8	22	8
CAGATCTTCCGATGAT	ref_1116_RC	39	36	52	35	43	38	42	44	53	40
ATGCGTTTATTGGTGA	ref_1116_RC	50	51	63	54	58	61	55	47	49	54
AATCCGCCGATTAAAT	ref_1116_RC	39	44	37	44	36	43	34	32	26	30
ACTTCCAGTTTCAAGG	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
ACCGGGCTACGATTTC	ref_1116_RC	11	27	10	12	15	17	8	8	11	4
GTCACTCTGGGTCTCT	ref_1116_RC	3	5	10	3	4	6	5	2	5	2
AGGACCTATTACCGCT	ref_1116_RC	12	4	10	11	2	4	5	12	8	6
GTGTCCACAGCTGGAG	ref_1116_RC	35	33	40	51	53	30	34	37	48	34
CCAGCTCTTTCTAGAA	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
GGATTCTACCCAATAC	ref_1116_RC	21	30	29	23	32	19	27	23	18	20
TCAACTCGAACTCTCG	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
AATGCAAGTAAATCCG	ref_1116_RC	5	4	4	8	3	1	5	4	6	7
AAATGCTTTTACTTAT	ref_1116_RC	25	20	24	15	23	25	19	13	19	23
CATGGTTAAGCGAGAT	ref_1116_RC	43	45	58	55	61	47	48	52	57	37
GTATATTGTATCAAAA	ref_1116_RC	12	11	7	11	6	5	16	9	10	3
CGGCGTGGTCCCCTCT	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
ATTTTAGGCAGGCCAT	ref_1116_RC	36	36	33	41	36	34	43	36	34	27
GCTATGTTGGTCTGTG	ref_1116_RC	13	17	18	22	12	17	12	12	19	12
CATGAATGCCCTTCCT	ref_1116_RC	40	38	52	41	41	31	35	29	52	31
TGAGAAGTGCTTACCG	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
CCGCATGTCCGTTCTG	ref_1116_RC	55	57	70	56	62	46	65	62	57	47
TAGGGCTAATGAGCTC	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
GCAATTCTTGAGAATT	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
TCTTGGGTGTCCAGTG	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
CTGCCTATATAGGTCC	ref_1116_RC	50	72	84	70	69	55	70	58	85	75
TTGATAGTGCACCCGA	ref_1116_RC	26	39	33	39	35	34	53	36	39	37
CCCAATCTGATGGAAT	ref_1116_RC	111	151	140	120	175	138	155	96	141	116
TGTAGTTCTTGTCATG	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
CCAAATCCATAGTTTT	ref_1116_RC	106	166	144	135	185	99	162	99	163	88
GATCGGTTCAGGTGAT	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
ATCATATGCGGTCGCT	ref_1116_RC	47	35	41	38	36	23	30	33	30	26
CGCGTTCATCTATTGT	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
CAGTGATGCTGTCCCT	ref_1116_RC	14	20	21	21	14	28	14	13	21	14
CCAAATAGTGTACGTG	ref_1116_RC	14	16	18	20	31	16	30	20	30	21
GTCGATGCAAAAGTAG	ref_1116_RC	7	7	6	4	7	6	5	8	7	4
CGATCGTCTTCCCTGG	ref_1116_RC	35	38	34	42	40	34	31	27	37	25
GTATGGGACCTCAGCT	ref_1116_RC	37	46	68	50	49	52	49	54	55	44
TTGCTCTTTTCTAGGG	ref_1116_RC	73	60	67	78	52	67	49	70	76	44
CCACATTAACAGGGTT	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
AAGCTTTCTGTCTATC	ref_1116_RC	0	0	0	0	0	0	0	0	0	0
ACTGAACATGACCTAG	alt_4864_missing	3	8	3	5	8	6	4	4	11	7
GGCACCTCTGCTGGTC	alt_4864_missing	0	0	0	0	0	0	0	0	0	0
TCTACTTCGTCCGAGG	alt_4864_missing	132	191	180	138	183	162	170	125	192	126
GGGCCGGACCCGCTCT	alt_4864_missing	53	55	71	56	53	32	47	36	73	38
GGCTAGTATTCTCGGG	alt_4864_missing	44	54	58	52	64	30	63	39	64	39
AGGGCACGCTAAGATT	alt_4864_missing	27	45	28	21	32	35	32	29	44	27
GTTAAGCTCGTTGCCT	alt_4864_missing	5	3	5	3	4	4	6	8	7	3
ACTCGATGTCAGGATT	alt_5739_new	5	12	4	1	7	2	8	8	6	6
TTTAGCGTAGTGTACT	alt_5739_new	7	10	6	4	14	2	9	5	9	1
GCTACGGCTCCGACGC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TATGCTCTTTTTAGTC	alt_5739_new	5	2	4	1	6	4	5	8	4	6
TGTCAGCTCGCGGTGT	alt_5739_new	33	29	31	19	22	18	19	12	22	12
ACAATCCTTTTTTAGG	alt_5739_new	102	138	104	89	108	94	118	85	104	83
TGACACGGGCAGCCTA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
AGTAGTATTATCTTAA	alt_5739_new	25	36	33	31	33	18	35	24	40	28
CTCTCTAGCTCCGCGC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TCGCCTCGATCACTTG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TCCGTGGGCATCGCTG	alt_5739_new	10	12	8	11	13	16	10	11	18	9
GGATGTCCCGCCTGGT	alt_5739_new	0	0	0	0	2	0	0	1	2	0
AGATTTCCTCCTGGAC	alt_5739_new	21	20	24	17	31	26	21	18	11	24
GATGAATGCCGGCGTT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CATCGCGCCCAAAGTT	alt_5739_new	6	6	4	9	2	5	8	11	4	7
CATAAACCCGACCGTA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
AGAAGGGTAGTCAGTT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GTCAAGGCCGTGAACA	alt_5739_new	46	32	24	25	17	32	31	22	51	27
AACTGTCCAATAGCGC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GACCTCGCTTAGTAGT	alt_5739_new	12	20	23	14	18	17	21	10	17	18
GGTATAATTGGTACTG	alt_5739_new	4	12	10	8	24	9	23	6	22	6
GTGCTAAATTGTTTCC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CTATCTGCGGACCCCG	alt_5739_new	19	16	38	14	8	7	14	19	20	4
GTTAAATACTGGTCTG	alt_5739_new	31	43	28	32	47	30	44	18	40	22
CAGGGGGCAAGACACC	alt_5739_new	3	5	4	5	2	1	3	6	5	1
ATATAACTCCTCGGTT	alt_5739_new	2	7	3	3	7	3	1	1	7	4
AAGGTATATCGGTGAA	alt_5739_new	1	2	5	5	1	0	3	2	0	0
CAGTGAATCATCAAGC	alt_5739_new	10	9	23	23	20	14	8	16	18	19
TTCTTATGTTTTTTGG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
ATGTGGTCAAATGAAT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GTCCTCATGCTGATAG	alt_5739_new	24	38	39	26	43	37	42	34	51	36
AGACTGTTGGTCCAAC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
AGTCCTAGCTTAGTTG	alt_5739_new	1	2	1	1	3	3	3	1	2	1
GATTTTGGCTCGATAG	alt_5739_new	0	0	0	0	0	0	1	0	0	0
AAGCCGTATCTCTTGC	alt_5739_new	19	38	18	11	27	9	53	6	28	12
AAGTGTCGATGTTACA	alt_5739_new	16	25	24	23	20	12	38	14	31	9
GTTCGTGATATACCCC	alt_5739_new	17	17	19	12	17	10	27	17	23	7
AAAACAGCTGGGTGGC	alt_5739_new	22	18	14	17	16	15	32	16	39	16
GCGGGAGTTAAACTAA	alt_5739_new	2	5	7	5	9	5	8	4	4	5
TTCCACGTATACCGCA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TATTAAGGTCTAATCA	alt_5739_new	1	8	5	8	7	2	4	1	0	5
CATACTGTCCCTAGGT	alt_5739_new	21	39	17	34	39	14	33	29	33	20
CGATCATGAGTCTCAT	alt_5739_new	20	24	25	27	34	23	29	21	29	15
ATAATTTCCAACCGAT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TCCGTCAGGATCAATT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GCAGGCGATGAAAAGC	alt_5739_new	14	11	13	12	10	9	11	10	16	5
TTCGGGCAGCATTCCA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GTTATAACGCCTTCCC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TCCGGGTCTGGGGGGC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CAGAGCTGTGGCTACC	alt_5739_new	42	31	50	51	39	29	36	37	48	46
TTACATTTTGTACCAG	alt_5739_new	49	57	46	48	41	40	52	40	71	38
GTAGCCCACGTAGGGG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CGTACCACTGTTTATC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
ATTCATGCAACTTACT	alt_5739_new	5	20	16	6	19	18	21	9	21	9
GACTTTGAGTGCCCAG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GAACATTAACGTGGGC	alt_5739_new	92	93	110	85	116	82	94	97	97	73
TCCTAGATAGCTTTGA	alt_5739_new	16	42	30	25	45	15	34	16	32	19
ATACCGTAATGTGTAC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TTATTAGATTTCATGC	alt_5739_new	11	9	7	9	8	16	10	8	10	9
CTTTGGATGTCGACGT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GCAGCTAAGGATCCCA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CGTTGTATTGACGTAA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
ATCTCCCTGCCTCATT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CTTATAGATTTATCTC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
ACTCTTCTAGAACAGT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CGTCTTTGTACATTCA	alt_5739_new	10	11	6	9	12	8	7	10	10	8
TGACTATACGCGACCT	alt_5739_new	4	8	4	5	8	4	6	4	6	2
GATTGTAGAACCTTTC	alt_5739_new	52	44	48	46	42	33	37	44	53	30
TAACATACCCCCGAAA	alt_5739_new	15	30	14	24	19	18	29	22	25	17
AGGCAAGCTTGCTTGA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CATTAAAAATACATTA	alt_5739_new	16	10	15	19	17	5	14	5	14	17
AACTTTAGCCCAATGC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TTCTTCTGCTGCCATT	alt_5739_new	12	12	8	11	17	17	27	11	10	8
CTAGCCGATTGGGTCT	alt_5739_new	72	140	102	100	140	108	180	102	168	83
GACAAACATTTCTGCC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CTACGTCCCTTGTGCA	alt_5739_new	34	39	38	24	46	26	35	23	47	36
CCCAGCCACCACCTAT	alt_5739_new	10	29	18	18	27	14	33	20	33	17
CAACGACTCGGTTTGC	alt_5739_new	3	4	7	8	1	5	4	5	4	4
TAGCAGTTCAAATATT	ref_5739_new	11	12	17	15	15	16	16	12	14	4
TGATAGTATTTGTTCT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
AACACATATGTATATT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CCGCCATGAACAGTTG	alt_5739_new	23	39	31	14	60	32	28	23	38	25
TCCCGCCTCAGGTGCT	alt_5739_new	94	128	123	88	115	89	108	78	142	84
GAATTCGCCATAGATA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TAGTCTAAAGTACGAG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CAGCCAGCACACCGAG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CTTCACGTTTAGCTGT	alt_5739_new	19	22	11	21	24	16	11	29	20	13
ATCTCTAAGCGGCATC	alt_5739_new	3	8	8	6	9	9	12	11	7	10
TCCAACTCAGTGCCAT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GGACGAGTATTATCGT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
AGGCATTGACCGGCGT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TTCGTGCTGCTAGAAC	alt_5739_new	5	10	7	12	16	10	20	12	18	11
GCGCCGGGTGGCCCCG	alt_5739_new	36	47	45	39	38	33	47	14	37	25
ATTCGGCCGTCATGCG	alt_5739_new	32	55	21	29	60	28	53	21	62	16
CTCTGCTCGCGGTGCC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GCAGGTACCTTGCCGC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GTTTCGGTCTTGATCG	alt_5739_new	29	26	40	23	30	38	41	23	29	24
ACGATCACTTTCCTCA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
ATATATGGGCTCACTA	alt_5739_new	14	11	10	14	15	7	9	6	6	1
CGTATCACGCAGTCGG	alt_5739_new	25	32	48	27	58	23	37	28	39	19
TTCTAGCTCATCTGTG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GACGGTTCCTGATAGT	alt_5739_new	4	2	6	2	7	3	1	2	5	2
TGCCTCACTATATGAA	alt_5739_new	3	8	10	4	19	4	14	8	13	15
TACCCGGGTCTATTCA	alt_5739_new	4	4	5	6	4	7	8	6	4	3
CCAATTAGGAATTGCA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GTGGAGGTTTTTCTTA	alt_5739_new	74	102	95	70	105	93	101	63	107	66
CAGTTGGTGGACGTGT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GCGCCAATCCGCTAAG	alt_5739_new	52	46	34	33	46	32	48	42	47	33
GAGTATTAGGGTTCAT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TTACCGCGTGTTCGAG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TAGTGTCTTCTACATT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CAGATAGGGACGGTGC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
AATCGTATGGTGGAAC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GATGCTAACTTCACCC	alt_5739_new	77	79	106	88	76	74	91	83	87	77
ACTCGTTTCAATTTCG	alt_5739_new	52	57	54	49	34	54	53	39	53	45
CTTAATCGACTTTAAA	alt_5739_new	10	27	16	11	24	14	17	15	33	10
TTGCAAAAAGCTAAAC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
GTCCACCCGCCTGATT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CAGGCCATATCCATTT	alt_5739_new	22	28	24	26	27	12	29	18	30	13
TTATGTGCTACGTTGC	alt_5739_new	34	24	16	20	24	11	32	24	30	17
GTTCGTGCTCGCGCTA	alt_5739_new	31	40	36	36	45	31	43	34	42	32
TTGGAACCATTTGAGT	alt_5739_new	5	8	4	9	9	5	17	3	8	3
CATACAAATTCGTTAT	alt_5739_new	4	7	5	2	2	3	2	6	4	2
CAAAGCTTCGACGAAA	alt_5739_new	24	27	39	22	30	37	34	23	30	19
GTATCGTACCCCGTGG	alt_5739_new	51	58	67	67	56	45	70	42	61	57
GTCGAACTGTCAATTG	alt_5739_new	0	0	0	0	0	0	0	0	0	0
AGTGTCTGCTCCATAA	alt_5739_new	0	0	0	0	0	0	0	0	0	0
ACTTCTTTCGGCCGTC	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CCCAACTATTAGAGGT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
TCTGCCATTTTTCCGT	alt_5739_new	4	5	4	3	3	6	4	4	5	4
TTACTTCGGTTGCTTT	alt_5739_new	0	0	0	0	0	0	0	0	0	0
CAGTACATACCTCGTA	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GGCAGAACGACTGTTA	ref_1522_RC	73	55	76	59	67	77	65	62	66	54
GCCTACGTATGTTTTA	ref_1522_RC	57	59	71	51	53	56	54	63	69	52
CACGCACGACCTGGTT	ref_1522_RC	184	107	216	143	114	163	109	158	128	158
ATTCCCATACGATCGT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GCTCATCTCTTTTAGA	ref_1522_RC	17	14	20	15	14	20	15	11	19	19
CCACTGTATCTCCTGG	ref_1522_RC	19	22	17	18	23	17	24	16	26	19
CGAGCAGTGCGGTGCC	ref_1522_RC	53	30	61	54	40	46	44	61	40	55
TTAGGATGTCTTGGCA	ref_1522_RC	2	1	1	1	4	1	4	0	0	4
TCAGATCGGTTTGCGT	ref_1522_RC	61	74	87	57	79	64	86	76	84	48
GATTCAAGCCTAGGTG	ref_1522_RC	100	85	119	102	83	71	78	87	79	70
TGTCATATAGGCTGTT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GAATTTGAAATTTCTC	ref_1522_RC	35	22	32	31	35	34	23	34	30	26
GCAGAGCGCCTTCGGC	ref_1522_RC	16	13	20	25	12	9	32	18	8	16
CTAATCTCGCTTTCTA	ref_1522_RC	53	44	63	39	49	52	64	48	61	44
TATCTCGTGTGATGCC	ref_1522_RC	98	82	116	113	74	99	93	96	63	103
TCCGTCGGAGGTGCCA	ref_1522_RC	25	40	38	32	29	19	40	33	38	31
TGTTTGACAGGTAATA	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
ACTCTTTGTGGGGCCA	ref_1522_RC	18	19	28	31	22	26	17	25	18	23
TGAATTTGTATTTATT	ref_1522_RC	61	52	67	65	51	72	39	65	44	63
ATTAGGAACATCTGCT	ref_1522_RC	16	16	17	14	15	15	15	21	11	10
TGCAGCTGTCTTATGT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GTTGCGTCCCGATACC	ref_1522_RC	31	18	41	31	46	28	39	39	29	30
CACTAGGGCCTTGGTA	ref_1522_RC	70	83	111	68	64	62	67	86	60	81
ACGCATCTCTTGGCGT	ref_1522_RC	77	84	96	92	73	75	85	62	62	61
TTGAGGTTCACCTGTC	ref_1522_RC	30	14	19	24	7	16	18	7	20	14
CTCTCATATTTTGGTG	ref_1522_RC	11	5	10	12	4	11	8	6	3	7
GTGTAGCCATGGCGTA	ref_1522_RC	28	20	32	33	30	31	29	28	17	33
TGCTAATCCGGCACTA	ref_1522_RC	20	18	30	42	18	21	19	26	24	24
TTTGAGGGCAAGCTAG	ref_1522_RC	48	57	88	65	51	63	44	47	45	58
GACCTCCTGTCAAGTT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGTTGTTTTGTT	ref_1522_RC	106	74	121	92	60	111	81	99	73	101
AGATTTCTCCACCCAA	ref_1522_RC	77	58	99	102	70	81	67	82	60	86
GCATATATTCGGTGGT	ref_1522_RC	20	9	16	18	12	15	15	15	9	14
CGGTTCAGTAGGGGGC	ref_1522_RC	20	15	23	17	16	25	18	28	16	8
AGCTTGGAACTCTAAA	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TTAACAAAAGCGTTTA	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GATACCTGTATTTCTT	ref_1522_RC	8	4	16	17	5	7	8	12	12	10
GCGCGGATTTTTTAAA	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TCCTGTTGGCATTTCT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
AATATCGATACCGGTG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CTTGAGCTTTTTATCG	ref_1522_RC	29	24	30	48	40	34	22	36	23	30
GAACAGACAGGTATAT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CTAGTTAGCAGAATTC	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GACATTGTCGTCATAT	ref_1522_RC	94	74	127	125	85	105	95	117	83	89
GGGCCTCATGGCGGCA	ref_1522_RC	100	43	161	108	57	118	59	116	58	95
TGATCAATGGGCGGGC	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TGTTATAAGCAGATGT	ref_1522_RC	11	18	13	23	12	11	27	12	8	12
GCATAACTTTATATGC	ref_1522_RC	3	1	3	0	0	1	1	2	3	2
TTAGTGCCGTGCATTT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TGCATTGCCCTCGAAA	ref_1522_RC	24	29	44	28	49	26	36	38	24	15
CGGCTCACGTTTAGTG	ref_1522_RC	37	43	55	49	41	31	39	44	26	33
GATTTTCGCATCGCAA	ref_1522_RC	36	34	65	42	31	48	33	32	42	34
GATCTCATCAACTTGC	ref_1522_RC	59	42	54	53	37	47	46	52	52	42
TACAACGCGAAACCTC	ref_1522_RC	31	26	28	28	20	25	15	29	24	17
CACCGCTGGTACGTCG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TGGGGGTGTCTTGAGC	ref_1522_RC	5	4	3	5	0	1	5	2	2	5
AGGAGCTACTACTTGT	ref_1522_RC	115	89	134	98	81	119	101	107	107	97
TGTACCTTCTACGATA	ref_1522_RC	253	141	287	236	189	227	222	206	194	201
TTCAGTGCAGGCCTTG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TCATAACTTCAGGTGC	ref_1522_RC	127	72	124	88	82	81	74	77	73	63
CGGCTTACGAAAATGG	ref_1522_RC	213	118	242	197	150	195	132	202	143	208
CTGTATGAATGTGCCC	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GGATTGGTATAGATCT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
ACTTAAACTTTTATGG	ref_1522_RC	84	55	120	92	77	68	64	71	57	80
CGCAAAGTGTTTTTGG	ref_1522_RC	94	72	97	96	77	110	70	100	73	75
GGCCCGCACTTCGCAT	ref_1522_RC	154	109	180	184	107	154	129	161	108	135
GTGCATAATGGAAAAT	ref_1522_RC	208	139	249	188	124	189	166	191	160	181
TTGAAGAATGACCACC	ref_1522_RC	17	10	14	8	12	14	14	15	19	11
ACGATACATCTTGTTT	ref_1522_RC	83	39	94	92	73	90	59	94	59	64
TTTGGTCGGCGCTAGA	ref_1522_RC	37	26	64	41	32	41	39	37	37	36
CAGTAAATCTGACTCC	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CTTGACTTTATTAGGG	ref_1522_RC	38	31	36	39	23	18	23	30	37	32
TCGCTTTGTTCCAGTA	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CCGAGGGTCCGCGTCC	ref_1522_RC	56	77	72	72	64	62	87	51	61	59
GCTTTATCCACTTTAT	ref_1522_RC	188	162	234	245	152	211	144	224	164	213
ATGCACTTCTTGTGTC	ref_1522_RC	62	27	54	69	40	39	48	60	30	36
CCATACTCTCATTCGT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GTCGGTACTATGGAAC	ref_1522_RC	72	79	74	83	89	73	74	82	74	60
CTATCTATTTCAGCTC	ref_1522_RC	64	54	76	66	47	63	62	50	71	50
TCTCAAAGGGCTCCTT	ref_1522_RC	13	17	27	24	9	11	15	11	12	11
ATCAACCTAGTTCGCT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CTCCACCCATGCAGAG	ref_1522_RC	7	3	10	5	4	5	5	12	6	1
ATCACTTATATTTAGT	ref_1522_RC	84	50	110	106	62	79	67	82	68	99
CCAGCTCAAGGGATAA	ref_1522_RC	97	95	130	114	82	106	115	96	98	70
GAGTTTGGATAAAAAG	ref_1522_RC	68	72	93	77	54	77	60	69	59	64
TATACGGCACGTGGTC	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CAATAGTTCATGATGC	ref_1522_RC	28	19	43	47	20	25	20	29	24	27
GCGCGGTCTCCTTTCG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CGCGGATCTGTCGGAT	ref_1522_RC	42	16	35	31	30	27	26	26	28	38
GGTCTACTACCGTCAT	ref_1522_RC	37	37	68	45	35	45	34	36	52	43
TTGGCCCACGTGAGGT	ref_1522_RC	27	13	25	29	16	31	14	20	11	19
GCATCTATATGTTCTT	ref_1522_RC	108	53	105	102	72	89	41	89	69	84
AGGTCTGGTATGATAT	ref_1522_RC	22	56	47	37	31	40	32	35	35	29
CCGTGGAAACTGCAAG	ref_1522_RC	175	94	166	159	105	144	121	112	123	115
CACGTTCATACTTTGT	ref_1522_RC	19	13	17	18	16	14	19	15	22	18
TTTCGCGCACACTGCA	ref_1522_RC	52	20	42	57	20	23	44	28	34	40
AATAGGGTTGCAATAA	ref_1522_RC	1	2	7	1	3	4	3	2	3	3
TTCGGTATAGTTTTTA	ref_1522_RC	37	29	44	54	36	35	20	29	40	35
TTTCCTGTGCGCTCAT	ref_1522_RC	63	46	56	52	41	43	53	46	54	55
TATAGCATAACTTCTT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
AATGGAGCTCCATAGG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CATTGGAATGGTAACG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CGGTGCACCGGGCTTT	ref_1522_RC	101	83	70	81	83	73	69	75	67	53
TTCCGTGTAGGTTGGG	ref_1522_RC	114	65	127	108	81	103	74	112	75	90
CGGCTTTATGGTTTTA	ref_1522_RC	23	19	40	29	27	18	20	23	11	13
GTATAGAACATTCACT	ref_1522_RC	10	16	12	18	11	10	13	11	14	8
ATGCGTTGCGCCGGCT	ref_1522_RC	40	43	47	42	41	39	43	34	43	42
CAATGTCAAACGTTTC	ref_1522_RC	31	22	25	36	32	19	20	23	42	16
TATCAAACGTACAATT	ref_1522_RC	56	40	68	58	42	53	42	49	35	42
TGTACCGACACGAATA	ref_1522_RC	19	12	14	21	12	14	9	22	12	7
GTAGCTGACTTATGAA	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GTGATTTAGTTCGTAT	ref_1522_RC	115	116	164	117	99	138	93	116	106	104
CCCATTACATAATCCA	ref_1522_RC	153	103	175	167	108	158	131	126	126	127
ACCGCTTCATACGTAT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CCTATGCTGAGTTGAT	ref_1522_RC	40	38	72	56	66	44	60	49	68	46
ACCATTTACGTCCACT	ref_1522_RC	53	64	56	59	76	51	89	59	64	54
TTCGTGATATCACATT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TGTCGATGTTGGTTGC	ref_1522_RC	159	100	149	133	106	128	93	159	120	137
TTTAAGAATGAACATT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CCCTTGTAGTAGTTTC	ref_1522_RC	62	55	81	67	65	49	67	59	79	52
GGTAATCCTCTAGCAC	ref_1522_RC	91	71	111	100	79	82	66	89	68	87
TTCGGTCTCCGCTTAG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TAAGGGGCCCTGGGAG	ref_1522_RC	27	20	36	34	24	42	23	16	30	24
ATGGTGTATGTATTAC	ref_1522_RC	47	38	52	37	34	23	44	41	38	31
TCCGCTCAGTAATGAG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
TGGTTATGTTATGGTG	ref_1522_RC	156	134	165	140	141	152	131	152	137	112
TATCAGGTGCAGCTTG	ref_1522_RC	6	1	1	3	3	2	1	3	2	2
GACACTTTTGTTTGTC	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CATCGGATTGGCTTTT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CCGACTCACTGCCACC	ref_1522_RC	23	27	13	30	21	22	36	14	43	19
TATAATGTAGCTGATG	ref_1522_RC	232	162	282	264	178	224	190	231	199	197
TTTAGGCGATGTTACT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CTTTAGCCAAGCTGAG	ref_1522_RC	151	125	161	152	112	135	134	131	132	109
GCCAGTTACACAATCG	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
AGCCTGAATAATTTTT	ref_1522_RC	13	15	24	30	21	14	15	22	17	23
TGGCATACTAGCTCAT	ref_1522_RC	9	14	14	18	11	24	16	19	19	18
TGGGGTCTTAATCGTA	ref_1522_RC	483	328	570	500	354	463	346	479	397	420
GTTACTGACCCTGTGT	ref_1522_RC	47	44	74	53	45	45	47	49	52	51
GCAGTCATAAAGTTGT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
CATTATGTGATCCCCA	ref_1522_RC	23	11	23	13	3	19	13	12	10	9
AGCTCTAGCTGCATTG	ref_1522_RC	58	49	69	63	46	43	44	49	43	43
TTCATACGCTCATCTT	ref_1522_RC	10	5	10	13	5	7	3	7	10	13
GCTTGTTGCACACGCC	ref_1522_RC	22	11	33	21	18	22	22	20	13	18
GATGTCCAATCATTTA	ref_1522_RC	91	69	106	103	78	67	94	83	85	82
TGCTGTATATTGGTAA	ref_1522_RC	47	36	48	45	38	33	32	38	32	45
TACATCCTTTGTTTCA	ref_1522_RC	9	4	13	4	5	7	1	3	4	12
ACGTTTAATAGTGGTT	ref_1522_RC	105	118	139	130	81	115	77	105	98	101
ACTGCAGGTCACCCGG	ref_1522_RC	81	82	109	87	69	74	76	89	85	75
CAGCGTTACATGTATT	ref_1522_RC	46	55	79	54	52	57	60	45	60	45
TTTGTACAAAATTCTT	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
ATTAATGTAAAGCGAC	ref_1522_RC	0	0	0	0	0	0	0	0	0	0
GTTTAGAGTGTCCAAT	ref_1522_RC	84	55	104	81	69	89	66	83	84	72
CAGCGCGTATAGCTCC	ref_1522_RC	35	53	72	46	53	53	70	69	54	32
TTCTTCGATTCGGTGA	alt_306_upstream	23	28	31	12	23	26	22	20	23	20
TATATTTGCGGCGGAC	alt_306_upstream	90	82	79	71	72	58	90	63	80	62
CCGGTTGCATACTCCC	alt_306_upstream	102	110	122	111	124	99	107	117	113	83
TAGCTTCAGTTCCGAT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCGTGCCGTCCA	alt_306_upstream	15	13	23	30	15	16	17	17	26	8
AGACAATATCGTGATT	alt_306_upstream	72	79	71	74	73	79	72	57	84	62
TTGCTTGACCGGGAGA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGACCAACCTCCA	alt_306_upstream	66	62	80	64	50	59	66	44	58	37
TTGCCAAACGGATCCG	alt_306_upstream	49	41	38	45	54	56	43	40	38	41
ATGCACATTTACTCTG	alt_306_upstream	17	32	33	38	31	22	33	31	31	28
GACCCGGTATATATAT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
ATGATAACAGAAGTCG	alt_306_upstream	82	75	82	68	93	63	84	86	96	59
ATATGCTACAGTTCAA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TCTATTTCGCGATGGT	alt_306_upstream	30	45	58	57	50	49	44	44	64	49
ATTCATTTTACGAATT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CACGGTAATCATTTTA	alt_306_upstream	67	77	62	60	75	70	64	51	70	77
AAAGGAACAATCTTCC	alt_306_upstream	71	64	68	71	56	47	66	56	60	44
TTATATTATAGTCCCT	alt_306_upstream	30	19	22	21	12	21	16	10	19	28
CGTGACTCAAGGCCAC	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTATATGGGATGA	alt_306_upstream	10	9	8	16	9	5	16	8	22	5
TTAGCCATCATGGAAG	alt_306_upstream	4	15	9	10	8	10	12	7	8	10
AATTCCAGAAGACAAC	alt_306_upstream	36	31	55	40	47	35	63	43	48	29
ATCCGTAATTGCACCT	alt_306_upstream	24	17	13	36	35	22	36	21	35	23
CCTCACTGGGAAGTCC	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGTCACACTTAGA	alt_306_upstream	13	11	6	13	11	5	19	7	14	9
CAAACCCGAAAATGGC	alt_306_upstream	110	83	134	107	84	114	97	102	85	79
GAATTGTTGCTTTTTG	alt_306_upstream	1	3	2	4	3	2	2	8	5	2
CGTAATTGAGGATGTC	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTGTCTCCCATCA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTTAGTCGTGAAT	alt_306_upstream	38	47	57	65	64	45	43	47	39	35
AGTATTGAATACCGAG	alt_306_upstream	25	40	46	32	38	26	32	36	41	28
TGAAAAGAGACAAAGC	alt_306_upstream	69	49	84	75	83	78	68	62	87	60
AAAGTAGAGCTAACAG	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TATTTCCTAGTATAAC	alt_306_upstream	237	253	302	270	253	231	288	222	280	209
TGCCTACAATTCGACG	alt_306_upstream	46	106	79	84	71	67	83	81	87	52
AGATCCGAGTTTGGTT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
GTGTATTCTTAAGTCC	alt_306_upstream	75	60	87	68	71	67	77	61	61	55
CCTCTCTTTTTAATCA	alt_306_upstream	11	21	17	20	23	25	23	21	24	12
GACGATACCAGGTATT	alt_306_upstream	23	17	24	13	25	13	13	13	9	22
CCTTGGACGAGCATAG	alt_306_upstream	9	20	26	17	22	18	23	13	34	17
TGGGTCTATGGTGGCA	alt_306_upstream	25	34	24	23	52	15	34	20	38	11
CGACTATCTTATTGAT	alt_306_upstream	48	65	66	39	72	68	68	53	72	46
GGGTTCCTAACTCCCT	alt_306_upstream	14	23	24	16	25	19	23	16	20	13
CATTGCGGCTAGGCCC	alt_306_upstream	7	10	12	14	8	13	5	5	9	9
TATCCCTTGCAATCGG	alt_306_upstream	19	13	14	23	21	16	9	14	14	7
TATGATCCAGCGTGCT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTATTATCTATCA	alt_306_upstream	25	19	23	24	21	24	21	16	32	15
ACAGGCCGACCTACAG	alt_306_upstream	12	32	19	13	33	16	26	14	25	18
TGCATTTTGCTCGCTC	alt_306_upstream	22	33	35	29	42	31	47	32	30	33
TGTGCTAGGCTTTGAC	alt_306_upstream	122	146	138	115	158	133	147	129	127	113
AGTTTCGTAAATCTGA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CAACGGCCCAGGTTCC	alt_306_upstream	26	52	48	51	59	43	69	46	66	40
CGGCTTCTTTCTTAGT	alt_306_upstream	10	4	11	12	7	15	9	10	17	8
TGCCCAACCTTCGTAT	alt_306_upstream	8	16	14	13	29	11	26	3	24	8
TACTCGCCTACCTGCT	alt_306_upstream	13	11	23	9	17	19	21	14	19	15
CTTGCCTCCGAAGTAC	alt_306_upstream	65	64	110	83	73	70	69	65	83	56
TGCGTCTCACGGCACT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
GGATTACCTTAGTCTT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TTTAATTTCATAGCGA	alt_306_upstream	3	7	6	3	6	3	1	2	3	4
TTCAGGCGTGTCGGTA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCGGCTTCACGCG	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
ATATGCCCGCCGCCTG	alt_306_upstream	20	14	21	21	11	18	22	15	20	27
ATCCAAGTCCGTTCCC	alt_306_upstream	39	56	66	52	41	60	51	34	62	37
TGAAGTAAGACTTCTT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
AGCACCATGTTGCATA	alt_306_upstream	86	84	98	98	82	84	108	87	113	76
GGGTCTTTTGTTCTTC	alt_306_upstream	30	38	53	45	37	38	42	29	43	38
CACTTACATGAGCTAC	alt_306_upstream	10	15	11	18	11	12	7	8	14	15
GCGGTTTCTATGTGAA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCCGTTGCGTGAA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
ATATTGCAACCATTAC	alt_306_upstream	38	38	49	46	43	34	42	41	46	33
AGGCAAGCCACTCCGT	alt_306_upstream	8	10	9	1	9	7	12	8	15	2
ACCTGCGGTAACGCCT	alt_306_upstream	19	20	23	22	27	16	27	22	33	18
TTTCCTTGCCACAATA	alt_306_upstream	1	5	3	3	1	6	2	3	10	8
ACCTCGGCCACGCTTC	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CTCATGCTTACAGTTT	alt_306_upstream	18	30	35	28	27	21	34	30	27	15
CCTGTGTGGTCATGGA	alt_306_upstream	67	101	69	83	95	69	93	64	110	63
ACGCATCCAAGCGCGT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCGAGCTGGTGTC	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAGAGGCATCGGT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CACAATTACGGTATTT	alt_306_upstream	145	98	125	119	130	97	123	105	130	107
CGATTCTTTCCGATTC	alt_306_upstream	34	42	49	48	41	29	41	53	43	47
CACGCGGGTTAGTGGT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTCATATGACGTT	alt_306_upstream	23	29	30	30	35	22	28	25	32	34
TAGTCCTGTTTCGCTG	alt_306_upstream	11	6	16	15	5	3	9	4	6	4
TGTCCAGTTCGTCTCT	alt_306_upstream	8	6	14	12	7	10	7	3	5	4
CGATTTGCCGGGCTTG	alt_306_upstream	171	181	206	190	225	172	206	184	210	179
TGTAGGACATTAGGGC	alt_306_upstream	11	2	4	7	12	6	8	9	8	9
CACTGTTGCCTACACC	alt_306_upstream	24	20	21	15	15	15	27	14	26	18
GTTTATAGCCCTTTGG	alt_306_upstream	94	85	104	95	98	92	93	85	114	80
GTTTTCACGTATCTGC	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TACACACTGTTCGCTG	alt_306_upstream	56	70	54	52	84	66	64	58	78	37
AGCCCCCGCATTCAAT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TGCATTCATCGACCCG	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CCTACGTACAGATGGA	alt_306_upstream	63	82	96	82	70	74	75	103	103	85
AACGAGGTCTACATTA	alt_306_upstream	24	26	25	18	25	15	27	16	24	26
TCGTCTTTTAGCGCTG	alt_306_upstream	28	36	35	27	37	29	45	31	50	25
CTTATGACTCAACGTG	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
GCCAATGGGCTTGATG	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTGCATCAGATCA	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGTGTGCTGTTAT	alt_306_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAGTATGTGAGCG	alt_306_upstream	7	3	5	10	16	14	5	10	8	4
AATTGTCTGCGGTGTC	alt_306_upstream	16	8	26	19	20	10	30	14	19	14
GTTCGATGTGCCGCCC	alt_306_upstream	44	43	55	42	43	44	62	36	40	32
CTTCGGGTTCTCCAGC	ref_2054_missing	0	0	5	5	0	2	3	2	4	4
GTGTGTGATGGTTCCT	ref_2054_missing	18	19	16	24	15	16	20	10	19	11
GCGTCATGCATCACAA	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CGATTCTCTTTAGTAG	ref_2054_missing	8	13	8	12	20	13	19	9	14	12
GTTCTTTATTCTTCCT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TACCTACCCGTGCTAA	ref_2054_missing	2	9	6	2	5	4	3	1	7	7
CTTAGCTATACACTCT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CGTTTATCACAACATG	ref_2054_missing	30	38	37	31	37	33	42	21	46	24
TACTCTATTGCCTGAT	ref_2054_missing	23	28	28	16	34	16	23	14	24	17
TTATCGCGATAGCGGC	ref_2054_missing	7	8	9	8	5	12	2	10	13	3
AAGCAGCCCTGACTTC	ref_2054_missing	19	16	13	8	7	3	22	8	11	7
CTTAAACGGAAACCTC	ref_2054_missing	20	36	23	26	27	17	29	25	30	15
GCTAGTGACTGGGTGT	ref_2054_missing	5	2	0	3	2	1	0	3	2	0
GGTGCGCGTTTCAGGT	ref_2054_missing	7	6	15	7	14	8	14	6	11	9
GTTCCTGGTTTAGCTA	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GCATTATATCGCTCCG	ref_2054_missing	9	7	4	9	8	4	4	3	6	3
CCTATATAGGAGAATG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CTGGAAACGTTCCCTC	ref_2054_missing	8	14	8	10	9	6	10	3	21	8
GACGGCGCAAGATGTC	ref_2054_missing	1	0	0	0	0	0	1	0	0	1
CTGAGTGCGGTGCATT	ref_2054_missing	11	8	10	8	9	5	6	5	7	3
CGCTTTGAACACTAGG	ref_2054_missing	1	6	4	4	4	2	8	3	3	5
TTTAGGTAACTCTAAT	ref_2054_missing	6	19	11	10	5	13	9	9	14	4
CAGCAGTGTGTAGAAG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TAAGCCATTTGGTCTG	ref_2054_missing	10	12	3	12	8	10	19	10	13	6
CAAATCATAACTATTC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TACTAATTCTCGTCGT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TTCGTAGCGACATCGC	ref_2054_missing	5	7	8	14	6	5	10	2	10	7
GTTTTTTTATCCGTCG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
AAAAAGGAGTAGAATT	ref_2054_missing	24	41	34	28	29	34	28	28	34	19
TAAATCCGCCTATTAC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TCCCCACGGTTGGGTT	ref_2054_missing	2	4	4	5	7	4	2	4	6	2
TTTGAGATATTTGGAG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TATTTAATATTGCGCA	ref_2054_missing	53	27	36	39	53	37	36	46	38	35
ACGTAGAAACGAACAG	ref_2054_missing	4	12	3	5	8	6	6	3	6	3
GGCCTTATTGGTCAAG	ref_2054_missing	35	28	29	22	39	36	45	23	48	27
ATGGATATAACTCCAT	ref_2054_missing	10	12	13	12	8	9	20	12	20	6
CTAATTGCGCTCGGTC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GACGTTTACTTACCTC	ref_2054_missing	0	10	1	1	14	0	12	0	6	2
GGGCATCCGCTGGTTC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTAATCATATAT	ref_2054_missing	8	8	15	10	17	9	23	5	18	5
GGTTTGGTCGCTCCTT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
ATTTTCTTACTTGCTC	ref_2054_missing	6	8	8	4	19	3	18	11	6	6
GAGCGACGTTATTCAT	ref_2054_missing	11	13	9	16	6	8	9	11	5	5
CACTCTTGTCAGTTCT	ref_2054_missing	17	20	16	10	17	11	17	14	27	13
GCGTTCTGAGACAATA	ref_2054_missing	1	7	3	0	1	2	8	6	0	2
AACTGTAATTCAGGCC	ref_2054_missing	4	21	7	9	9	8	19	10	14	7
TAGTACATTTCGGAAT	ref_2054_missing	37	62	34	33	49	31	47	36	70	34
GCTGATGGTCATATAC	ref_2054_missing	0	4	0	1	0	6	4	1	3	2
CGTCGTCTCTCGCCTC	ref_2054_missing	14	5	10	10	16	9	12	8	16	7
CAGGGGCATGCCGCAA	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TAGGGTGTCGAACTCT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
AGAACGGCTCAAAACA	ref_2054_missing	11	10	12	8	9	7	6	4	11	7
GGTTTCCTTAGGTGCA	ref_2054_missing	23	60	33	34	44	27	40	38	45	30
GATAACCTGGTAGGTG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TCTCGAGTTGTCGGAC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
ATGGGATCCGAAGATC	ref_2054_missing	20	38	19	23	30	19	33	18	20	18
CAAATCTTAATTTAGG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CTCATGGTGTTAAACT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CCGCATCAGTTTTTTC	ref_2054_missing	1	2	1	1	4	0	2	0	5	0
TTATCTTGCATTCTGC	ref_2054_missing	9	13	18	12	19	8	19	11	11	16
CGTCACACAGCTAATT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CCTGCCATCGCACGCG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TGACGAGCGCGGCGCT	ref_2054_missing	4	3	3	1	6	1	6	2	5	4
TTGGCACCTGTTTTGC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
AAGTTCTGTTGCCGCG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CATGATAGGTCCGTTT	ref_2054_missing	16	24	21	21	19	19	26	14	25	17
CTCTTACCGTCGCGTG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TCATCTCCATGTGCTA	ref_2054_missing	9	31	18	18	16	15	20	18	11	12
CGATGATTCACATTCC	ref_2054_missing	9	8	9	11	4	17	10	5	17	8
CCATATCTTAGCCTCG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GTTCCAACAAAGTTGA	ref_2054_missing	10	6	8	5	12	14	10	5	11	10
ACTTATGTACCTGTGT	ref_2054_missing	3	9	2	2	8	3	6	3	4	6
ACCGCTTCGCTAGAGT	ref_2054_missing	14	26	15	16	25	14	31	16	20	9
ATAAGCGTATTCTGCT	ref_2054_missing	5	14	15	17	19	12	28	12	21	13
ACCAGTAATTTGCAGC	ref_2054_missing	21	18	35	22	19	16	27	22	26	12
ATTATTTAGCTTAGCC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CTCGATGAATAGCAGT	ref_2054_missing	8	4	8	8	16	7	14	5	12	3
TCACGGTGCTGCGGTT	ref_2054_missing	5	15	10	8	6	5	6	9	10	9
CATGCGCGTCGTCCAT	ref_2054_missing	5	8	7	2	4	1	4	9	11	4
GACCTTGGCACGTGAT	ref_2054_missing	7	8	5	2	8	6	5	3	5	8
ACCGGTGTTGTATATT	ref_2054_missing	1	0	4	0	2	2	2	1	2	0
CCGGTATTCTAGGGAA	ref_2054_missing	0	0	0	1	0	1	1	0	3	0
ATGCCCGAAGACCGAT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TTGATTCCACCAACGC	ref_2054_missing	11	13	11	6	7	5	12	6	9	6
TGAAGATACTCGAATA	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GGTGCGCTCATTTTAG	ref_2054_missing	0	6	4	2	1	1	1	6	6	2
GAATAAAACGTGACTG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GACTTATCTCTAGACT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GGTAAGTGTGTCAGGT	ref_2054_missing	18	22	13	15	10	13	8	14	14	10
TTAGCTTGCAGTTATA	ref_2054_missing	10	15	21	5	9	16	17	10	15	5
CTTGTCTTTCACGCCG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TTCCCCTACAAGTCAA	ref_2054_missing	20	39	22	19	36	12	37	16	47	15
TAGGCAAATCCTTAAC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GGTGTGCCACAGTAGC	ref_2054_missing	14	14	11	11	10	10	12	8	26	5
GTGCCTAGTTACCTAC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CAATAAGGTTTGTTCT	ref_2054_missing	2	4	8	6	5	4	5	2	7	5
GTGGTTGCAAGTCCGA	ref_2054_missing	4	4	7	6	4	7	6	3	6	8
TGACTCTGTTTCGTCC	ref_2054_missing	8	7	15	4	11	6	6	3	14	4
TGACAGAACGTATGTG	ref_2054_missing	0	1	0	2	1	5	2	2	2	1
CTTAAGCAGCTGCATA	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
AGTTCATGTAGGCACC	ref_2054_missing	4	11	15	9	5	12	7	3	4	12
CGTTCCTTGTTTTAGA	ref_2054_missing	25	34	50	29	35	21	42	34	30	19
CAACTGCGGAGCGGGA	ref_2054_missing	7	12	7	4	11	7	7	5	19	6
ATTCAAGAGCACCAGG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
GAAATCTTACCATTCT	ref_2054_missing	2	8	11	0	12	3	6	1	8	0
TCTTATATAAATGTAG	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
AAGGGCGCTGTCCAGA	ref_2054_missing	2	2	3	4	1	3	4	4	2	3
ACGTCGTTAATCGATT	ref_2054_missing	4	4	1	2	6	0	5	2	0	1
TGGCTAGTGTAATAGA	ref_2054_missing	8	16	4	3	8	4	14	4	9	6
TTGCCGCTCCGTCGTT	ref_2054_missing	3	13	10	14	18	9	9	12	22	5
GGCAGTGTTAGAGAAA	ref_2054_missing	23	38	25	22	47	27	36	20	26	24
AATGCCAACTGACGTC	ref_2054_missing	8	21	11	9	19	6	19	2	21	7
CCACGATTCTAGGGTC	ref_2054_missing	2	4	5	2	2	2	1	3	4	1
TGGACCTCGTGGCCTC	ref_2054_missing	8	6	9	7	5	9	7	9	6	4
TAAGCCATTTGGTCTC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TTCTCAAGGCCCGCCC	ref_2054_missing	4	2	6	4	3	6	9	6	11	4
TCTGCTGGTGTATATT	ref_2054_missing	9	13	13	2	11	10	16	8	9	4
CGTCAGGTTGATTGTC	alt_2054_missing	6	12	4	10	10	6	12	9	8	3
TAATACGTAAGTCGTC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CAGGCTGTTAATGCAA	ref_2054_missing	7	7	11	3	6	12	16	4	11	1
AACAGAGTACTTGGGT	ref_2054_missing	0	0	1	1	0	0	1	0	0	1
TGCGCGCTGTTGCATT	ref_2054_missing	0	0	0	0	1	2	0	0	0	0
CTCGACGGGGGTAATC	ref_2054_missing	3	8	10	16	8	5	11	6	8	6
CTTTTCTGGTTTTAAC	ref_2054_missing	3	0	1	1	2	2	2	0	2	0
GTTCAATGGTTGTCTA	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CTAGCGTCCAGGGTGA	ref_2054_missing	56	59	54	45	79	53	64	38	70	43
TTCTCTCTCACCTGGC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TGTGTGCGCTGTACTT	ref_2054_missing	13	5	5	7	7	11	7	16	13	5
GTCCGTTTCCGGGTTA	ref_2054_missing	37	34	44	33	39	22	39	23	37	24
AATGCTACTCCAATAC	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TGCAGTATCCATGTAA	ref_2054_missing	6	4	12	4	8	3	3	6	8	5
TTCTCAGCCTCTGGTC	ref_2054_missing	3	6	7	1	6	6	4	1	10	0
TGAATGTTGCGCGTCT	ref_2054_missing	2	4	5	0	0	3	1	3	4	0
CTTATCATGCCAAGTG	ref_2054_missing	4	9	1	1	6	2	2	2	6	2
TGTAGCACTTATGCCA	ref_2054_missing	12	9	9	5	6	2	5	8	14	4
TTACTCAGGCCCTGCT	ref_2054_missing	3	10	5	6	12	4	11	11	10	5
CGAGTGGTCTTATCGC	ref_2054_missing	4	10	10	7	11	6	10	4	12	4
GTGGAGTGTGAGCCGT	ref_2054_missing	13	10	13	11	13	8	13	6	13	15
ATTCCTGCGGTTGTAT	ref_2054_missing	18	12	20	11	14	10	14	12	14	2
CAGCATTAGGAATTCT	ref_2054_missing	2	4	3	2	2	4	6	1	2	5
TGAAGGATCGGTAACA	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
CCGTACGAATAGGTTA	ref_2054_missing	11	9	5	5	5	2	5	5	5	0
CCCTACCCAGTTGGGT	ref_2054_missing	0	0	0	0	0	0	0	0	0	0
TTGAACACCTCACGTC	ref_2054_missing	4	8	1	7	4	1	4	5	4	4
GAATTGGTAGCACATA	ref_2632_reverse	40	40	63	63	46	41	45	48	42	36
CTTAGCTGGTTGCTTG	ref_2632_reverse	38	42	55	48	49	44	45	46	42	57
GAGTTACGCTTCTCGG	ref_2632_reverse	11	21	20	19	22	16	15	13	9	12
TGCTTCGATTTTTGGT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
AATGCCCCTTCTATAG	ref_2632_reverse	7	7	6	7	5	5	8	3	4	4
TAGAGTCGCTTTCTAC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
AACTTGATAAATTGGG	ref_2632_reverse	65	62	86	74	66	52	57	56	53	64
CCTGGGAATCAGCGGA	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CATTTACTGCGCTAGA	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTTCAGGTAGCTG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CACAGGTAAATTCGTC	ref_2632_reverse	65	63	85	80	69	63	57	54	53	54
CCTTGGTAGCGTGAGA	ref_2632_reverse	52	49	60	59	32	65	42	58	37	51
GTGAAACAGGCTGGAC	ref_2632_reverse	10	3	12	9	3	7	9	7	10	4
TGTGACTGTCCCATTT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTATCGGGGCAAG	ref_2632_reverse	4	5	5	3	3	4	1	3	1	0
TTGCTAATTTAGGAGT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTCTGCTACGCCT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
ATCATATACGACGCCT	ref_2632_reverse	109	65	112	90	70	97	57	68	65	92
TCAGAGCCTTGCTCTA	ref_2632_reverse	35	19	25	23	15	24	16	17	24	23
GTATCGGTCCCGGTAC	ref_2632_reverse	12	16	26	8	8	13	19	15	9	13
GAACCCTTTTCGCGTA	ref_2632_reverse	71	43	88	73	47	74	46	49	64	42
AACCCAGGAGAAGGAT	ref_2632_reverse	22	24	60	46	29	38	29	17	27	36
TCGGTGATATAATTTT	ref_2632_reverse	0	2	6	3	0	2	7	8	3	3
GACCGTGAAACACGTT	ref_2632_reverse	41	42	39	43	41	45	29	46	28	35
ATGCCAAACGAATTGT	ref_2632_reverse	77	53	115	76	81	71	68	63	72	71
TGTCCGGCCCTGCCGT	ref_2632_reverse	66	52	55	62	40	43	59	42	57	58
GTTGTTCCGGCCTTTT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GATTAAAGTTGAAGTG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CGTGATGGACCATACA	ref_2632_reverse	117	134	183	159	121	125	120	135	128	112
TAGCCTCTTTCCATCG	ref_2632_reverse	43	53	66	70	65	31	57	54	54	45
GGATGTTCCGAATCGT	ref_2632_reverse	84	53	87	99	59	86	57	68	73	79
ACAGTAAACCTCATCG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TAGGAAGGCCTTCTGC	ref_2632_reverse	0	0	0	1	0	0	0	0	0	0
GCGTGTGGTTTCACTT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTGAAGCTGTGAA	ref_2632_reverse	17	32	26	32	44	18	25	28	33	23
TGACGGTGGCGACTAT	ref_2632_reverse	119	93	111	121	132	90	113	98	123	97
TCTAATTCTTGTCGCC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCTGACGGGGTTG	ref_2632_reverse	0	0	4	3	0	3	3	1	1	4
ATCTTTCAGTTCCGTC	ref_2632_reverse	51	48	51	48	42	46	57	56	63	36
TGGTTTCGGAGCCCTC	ref_2632_reverse	31	31	53	35	32	33	33	41	38	34
ATCACGTGTAGTTGAC	ref_2632_reverse	32	37	46	38	28	38	26	41	25	39
TCAGCCTCGATCTTTC	ref_2632_reverse	24	46	47	28	27	36	41	22	46	24
GTTTCTATGTGCTCGT	ref_2632_reverse	10	12	18	15	9	11	7	19	12	10
TAACGGCCTAGGTTTT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTATGTGCCTTTA	ref_2632_reverse	17	19	22	30	21	26	27	24	20	26
TCCGTAATATCATTTA	ref_2632_reverse	22	29	20	14	31	14	33	31	34	21
TTTTAGGGTTAGTCAT	ref_2632_reverse	42	46	57	56	25	30	29	36	36	32
GGCCCCAGCAGGAAGG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGCGGGTAATGTG	ref_2632_reverse	50	47	73	69	47	46	33	40	42	36
GATATGATATTTTTGA	ref_2632_reverse	44	32	43	62	42	50	46	43	36	45
CTCTTCTGGGACCACG	ref_2632_reverse	14	9	11	9	9	9	4	11	9	10
GATCTTCGCGGCCTAG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TAGTATAACGTTGCGT	ref_2632_reverse	27	22	36	39	18	28	23	20	18	20
CAACCATTATGGTTTG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTATGGTATGGGC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CTCACGTGGTTACAAC	ref_2632_reverse	96	61	108	106	89	82	77	96	88	105
AAATTTCTTTTCTTGT	ref_2632_reverse	43	33	46	41	28	36	31	45	33	47
TAGAGTCAGTCCTGTC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CATTTGTTCGCTACTT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GACCCCTGTCTATCTA	ref_2632_reverse	123	80	129	103	88	106	78	114	99	91
AGTCGAGGGTATTAAC	ref_2632_reverse	12	9	19	11	11	8	11	9	9	9
CCTTGATAGCCATTCT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CCTACTCACATTATGA	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCCGGGTGCCATC	ref_2632_reverse	65	40	70	59	37	48	41	62	61	57
CGTATCTTTTGCAGCC	ref_2632_reverse	27	28	24	29	40	30	52	31	33	19
ATCTTCCATCTACAAA	ref_2632_reverse	26	23	33	29	27	24	23	26	28	34
ACGCAGATCGCTTGTG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TGCATTGTTGGATACT	ref_2632_reverse	7	2	4	2	7	4	4	3	3	0
TTTTCAATAACCCACT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTCGTTAGGTCAG	ref_2632_reverse	51	45	70	52	41	40	28	31	36	40
GTGTATCACTCGCTAA	ref_2632_reverse	13	12	19	16	12	15	13	12	14	6
AATTGGAATTGTCTCG	ref_2632_reverse	30	19	32	25	22	26	24	20	20	22
ACATATTTTTTCTGCA	ref_2632_reverse	16	5	10	12	11	4	15	5	12	5
ATCAATAGGAGATGTT	ref_2632_reverse	41	39	65	44	37	45	41	30	41	23
CTGGTGGGATCACGCT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCAGATAGTAAGGATT	ref_2632_reverse	48	32	61	47	48	44	41	56	39	58
CGCTACCGAACTGGAA	ref_2632_reverse	48	63	97	66	56	58	71	58	83	41
ATCTAAACGCATGTTA	ref_2632_reverse	10	7	8	16	15	5	10	9	6	11
TCGTACATCGCATACT	ref_2632_reverse	137	125	180	156	126	146	155	156	151	132
AGTTTACCGTAGAGCC	ref_2632_reverse	34	20	48	60	24	39	26	37	21	33
CTGTTATAAATTGTTT	ref_2632_reverse	28	29	57	62	37	41	37	26	28	33
AGATCTGCTGTATTGA	ref_2632_reverse	4	2	1	3	1	3	3	0	2	2
CGTGTGGACTGTTGCG	ref_2632_reverse	26	30	39	35	39	17	36	33	34	26
GTGTATTGGTTCGCGC	ref_2632_reverse	20	11	30	18	18	14	17	18	34	22
TGTAGTAACATGATGG	ref_2632_reverse	5	4	3	6	6	3	3	3	6	6
TTCAGTGCTCATTCTG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCACCGTATCTAC	ref_2632_reverse	60	64	67	67	66	67	56	52	62	44
GCGTTTTAAGATTTTG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGAAATACTCAGC	ref_2632_reverse	123	87	164	143	92	133	127	129	110	110
AAGGTTTACGAATCAG	ref_2632_reverse	48	40	78	45	46	52	39	74	53	53
GGTTTCCCTATTCAAC	ref_2632_reverse	141	139	198	180	136	152	149	148	149	140
GCCGTTAAGGATTAAC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TTTTATTCTCATATGG	ref_2632_reverse	56	36	68	64	40	48	38	59	55	54
TCGCAAGTCTGGGATA	ref_2632_reverse	77	110	131	114	76	112	92	93	120	97
TCATATCCGGGTCTGA	ref_2632_reverse	8	8	10	5	10	5	8	5	8	6
AGTCCGTACCAGTGAT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGTAACGCACTAT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TTGCATCCTGATGCCT	ref_2632_reverse	41	30	49	38	38	35	29	35	35	29
ATTCATCTCGCCATCT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CCGTACGGCCACCCCG	ref_2632_reverse	5	27	18	22	48	14	28	17	25	9
ACTAATTACCCACGGT	ref_2632_reverse	100	124	164	89	135	114	137	116	133	85
TTTCCGGTCTGGGAAG	ref_2632_reverse	32	29	37	34	35	29	28	29	25	29
TATACGGTGTCCACTA	ref_2632_reverse	5	4	16	9	5	7	6	10	7	5
ATTAAGCCCTATTGCA	ref_2632_reverse	40	22	35	38	15	30	35	30	22	23
TCAAACGATGAGGCGG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGGCCCGCTTTCG	ref_2632_reverse	176	142	228	192	154	167	130	163	164	168
TCCTATTCGTCCCCGG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCGTACTATACGAACG	ref_2632_reverse	57	43	54	44	40	36	47	30	36	35
CGGCTACTGGACTTTC	ref_2632_reverse	3	6	6	4	1	8	1	11	11	7
AGACTAACGTGTCCCT	ref_2632_reverse	14	9	12	18	5	9	11	15	8	26
CTGAGGGTAGGCTATC	ref_2632_reverse	4	5	7	5	6	12	4	7	5	5
CGCTTTACACACTATG	ref_2632_reverse	35	40	54	39	26	39	33	31	42	26
CTTTATAATTCCGGAG	ref_2632_reverse	27	29	21	22	20	18	24	15	19	20
CTTTCTCTAAGGAGAT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCGCACAAACATT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
ACCGGTTGGCAAAGGG	ref_2632_reverse	2	9	5	3	7	5	6	10	10	4
CAATCAGACCTGGTTT	ref_2632_reverse	8	9	13	9	11	11	9	16	14	9
CTCATCCATGTGGCTG	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTATTGACCTCGC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCATCACGGCTAC	ref_2632_reverse	27	16	22	14	17	24	8	12	18	17
ACTTCGGGACTGAGAC	ref_2632_reverse	2	11	3	1	18	2	17	3	15	0
CTAGGTGACTCCTGCA	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
AAGATTCAGTCTCTAT	ref_2632_reverse	2	3	6	0	5	2	0	4	7	10
CTAGTAACGCGAATCG	ref_2632_reverse	4	3	4	6	6	6	1	5	6	4
ATGCATTGGCCTCGTC	ref_2632_reverse	21	23	32	28	30	30	21	31	22	24
GAAGCGTCATGTGTGA	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCATGACCTGTGT	ref_2632_reverse	25	19	19	20	18	17	35	22	32	25
ACGGTGACTTTCGTAC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTCTTTTGGAACC	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
CTCCAGCTTTATGGAT	ref_2632_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGCTGTTTACTCC	alt_2239_missing	0	0	0	0	0	0	0	0	0	0
ATAAATAAATTAATCT	alt_2239_missing	7	14	14	14	19	3	20	5	17	8
GAAAATTTTTGACTCT	alt_2239_missing	39	68	27	26	36	37	46	35	64	30
TATAGCTTGTGCCTAA	alt_2239_missing	7	25	9	10	15	1	15	11	22	18
TAGCCTTTGCGCAAGC	alt_2239_missing	5	10	9	2	10	7	13	8	10	4
GTTCTCTCACTGTTTG	alt_2239_missing	7	6	5	5	11	2	5	4	11	6
ACTTGTGCTTGCAGCC	alt_2239_missing	5	19	6	5	8	3	10	4	11	2
TGTTTCGACAATAGAG	alt_2239_missing	0	0	0	0	0	0	0	0	0	0
ATTAGATGCTTGCACG	alt_2239_missing	5	4	0	2	6	3	5	4	6	4
CTGTAAAAATTTTTCT	alt_2239_missing	21	28	24	22	39	29	26	20	26	22
TGCATTACTAAATTAG	alt_2239_missing	21	18	24	21	30	21	49	18	25	14
TGCCGTCGTAACGACA	alt_2239_missing	19	37	26	18	32	13	42	18	42	13
CTCGTATTTAGAGGTT	ref_2239_missing	34	56	42	26	67	28	54	34	58	20
ATTTCAAAGCCTCCTT	alt_2239_missing	3	14	7	3	8	4	8	1	11	6
GTAAGTGAATCTCTCC	alt_2239_missing	20	26	23	14	19	14	28	12	27	10
TCTGTATCTGGAGTGT	alt_2239_missing	40	79	66	46	80	46	93	28	108	38
TTTGCGAGACGAAGTG	alt_2239_missing	28	73	53	44	54	36	50	34	64	42
AATCTTGGCGCCCGTC	alt_2239_missing	5	18	7	12	12	13	8	6	18	6
TGGGTATCCCTTGCGT	alt_2239_missing	8	8	3	1	11	3	11	7	19	2
CAGTCACCTGTTTTCT	alt_2239_missing	2	1	1	1	5	1	3	2	1	0
TCATTACTCGTTACAC	alt_2239_missing	72	133	63	49	118	62	136	67	158	64
TTTTTAAAAGACCTGT	alt_2239_missing	0	0	0	0	0	0	0	0	0	2
GGGTAAGTCGCACGCA	alt_2239_missing	11	21	15	15	29	18	27	16	20	15
CAAGACTCGGGGCCAA	alt_2239_missing	14	17	20	10	27	4	21	5	14	10
ACGGGGGACTCTCTAG	alt_2239_missing	0	0	0	0	0	0	0	0	0	0
AAATGCGAAGGGAGTA	alt_2239_missing	27	38	23	33	45	24	51	30	48	23
CGAGCAAAACCTTGAA	alt_2239_missing	17	28	24	27	25	21	33	15	44	19
TGCTACACCAATGCGG	alt_2239_missing	14	27	16	10	19	13	28	7	20	9
GCTACAGGTAGCTAAC	alt_2239_missing	4	11	12	4	14	2	10	3	11	4
TGAGGGAATGTTAATT	alt_2239_missing	40	71	60	33	73	59	89	32	87	36
TGGTTTTTAATGAACG	alt_2239_missing	1	2	2	2	10	0	4	0	4	2
TTACTAGGGCTCTGGC	alt_2239_missing	48	115	72	63	147	60	124	63	142	36
GCCTATGGCGGGGTCG	alt_2239_missing	4	13	10	3	12	12	13	3	16	6
AAGTCGGCCGGGACAT	alt_2239_missing	12	23	17	24	29	14	28	12	32	29
CCCCCTGGAACTTCAC	alt_2239_missing	0	0	0	0	0	0	0	0	0	0
TATTTTCGATTGTATT	alt_2239_missing	0	0	0	0	0	0	0	0	0	0
TAAAGTCAGCCACGGC	alt_2239_missing	1	2	0	0	4	0	2	2	1	0
GTTAGCTGTTAGGCTC	alt_2239_missing	25	44	29	28	77	29	60	23	52	24
TTTTTTGAGCGGCATG	alt_2239_missing	17	47	26	39	25	25	40	20	57	26
TCTTTTGAGTCTATTG	alt_2239_missing	0	0	0	0	0	0	0	0	0	0
TATGACTCTCTGACCT	alt_2239_missing	0	0	0	0	0	0	0	0	0	0
CTCGATAAGCTCACTC	alt_2239_missing	4	8	10	3	9	5	16	5	8	7
CAACCTGTAGAATCTG	ref_4201_reverse	48	107	73	52	82	50	70	62	86	61
TATGCGTTTCAGTCCG	ref_4201_reverse	32	30	30	31	37	29	37	25	35	20
CGGGGTAACCGCAAGC	ref_4201_reverse	34	53	47	24	67	27	74	31	54	41
TTTGGGCTCGGACTTC	ref_4201_reverse	50	80	48	36	88	52	76	39	87	40
TCTATCGGTCCTATTG	ref_4201_reverse	36	46	45	34	64	35	53	37	44	28
CTTCTCATTCCTTTCA	ref_4201_reverse	22	48	36	28	68	22	53	30	56	40
CTAGCTTCCGGCCCCC	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
TTCCATGAGATTCGTT	ref_4201_reverse	48	45	44	46	65	51	63	37	59	43
TCAATTTGGACGGTAC	ref_4201_reverse	17	34	27	31	27	17	43	22	48	18
TTTCCTTTTATTGACC	ref_4201_reverse	30	45	32	25	43	18	34	29	49	24
CTTGGAGGGCTGTCCG	ref_4201_reverse	35	63	34	34	64	26	67	48	46	31
ATCATCGGTTCATAAT	ref_4201_reverse	21	41	30	33	38	19	43	21	51	19
CTTGCCATCAAAGTCG	ref_4201_reverse	12	44	19	16	31	12	28	12	25	6
CTATTGCCGATTACAA	ref_4201_reverse	23	45	25	6	26	22	38	20	36	22
AGGCCTGCCATGGTGG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGGCTCTGGGTCG	ref_4201_reverse	84	118	79	83	108	63	143	76	156	60
TAGCTCGCTCTTTGCC	ref_4201_reverse	29	34	41	25	44	27	43	26	37	19
GGATTTTCAGACATCT	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
GGATGCTCCTCCCTAG	ref_4201_reverse	12	22	19	5	10	6	24	10	14	8
CTGGGTAATTGCGATG	ref_4201_reverse	11	23	9	9	15	4	2	9	10	9
CGGGAACCTTCCTATC	ref_4201_reverse	37	78	50	38	50	42	61	31	65	31
ACTCTCTTTCTTAGCC	ref_4201_reverse	5	8	3	5	16	5	10	10	10	3
GTTCCCAGCGTATTTT	ref_4201_reverse	7	18	19	9	31	13	16	10	17	12
TCCTTTGTGTGTAACG	ref_4201_reverse	3	14	6	2	10	5	9	7	26	9
TTCTAAATTCTAAAGT	ref_4201_reverse	2	8	7	5	4	6	9	3	6	4
AGCTGCCAACAATCAG	ref_4201_reverse	123	180	134	139	180	116	165	117	196	86
CCGCGAGATTTGATAC	ref_4201_reverse	6	38	3	12	43	5	25	6	36	0
ATCATATTAAAACAGG	ref_4201_reverse	15	17	10	10	17	10	17	18	27	13
CGGACTCGTCACCCTG	ref_4201_reverse	272	371	317	280	391	297	426	278	407	242
CCGACCTATGGTTCAT	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
GCGACGTGTTCTTCGT	ref_4201_reverse	31	44	37	19	46	23	43	35	42	24
GCTTCACCTCCAGTAA	ref_4201_reverse	18	29	13	12	38	15	31	7	28	12
TCCACTATTCCCAGCC	ref_4201_reverse	14	28	15	25	16	19	26	12	20	14
TTAAGCTTTTCTCCGG	ref_4201_reverse	31	43	37	35	52	38	55	20	38	22
ACGCATTCAATGAACG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGTGCTTGCGGTT	ref_4201_reverse	97	134	98	91	149	116	125	113	157	71
ACGTTGTGTGTGCAGG	ref_4201_reverse	2	2	2	0	3	0	3	1	3	0
TGCTACAGGGGGGATG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
TGGTACCATATCTCTT	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAGTGTCCATTCA	ref_4201_reverse	9	20	8	10	14	3	11	6	15	8
ATTCCGATCCGTATAC	alt_4201_reverse	120	141	116	102	139	95	148	104	132	86
ATTATTGTCTAAACGA	ref_4201_reverse	84	124	101	87	136	71	132	67	137	61
TGTTCTCACGACTGGG	ref_4201_reverse	34	77	35	34	82	29	73	38	67	28
GATCAACTGGTTATCC	ref_4201_reverse	6	5	1	4	6	4	6	5	5	3
GGTCCGCGGTTTTCCG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
GTAGACTGCTGCGCTG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTGTACGGTGAG	ref_4201_reverse	52	68	52	46	92	48	56	50	50	43
CAGAAACTGATAGGGG	ref_4201_reverse	12	18	25	14	21	12	28	15	29	14
TTCGGAATGTGCATAC	ref_4201_reverse	35	48	46	25	66	37	68	37	46	31
GCATCGTTATTTCGGA	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCAATTTATCGTT	ref_4201_reverse	33	54	30	33	45	27	64	23	58	28
TCGTTACTGTCCGTCG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGGGTCGGGGGCC	ref_4201_reverse	82	102	100	103	148	70	118	62	124	95
TACCTGTTGCTCTCAG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
TGATGTTTAGATTGTT	ref_4201_reverse	18	28	26	24	37	20	34	23	30	16
GACCTTCTTTATTCGC	ref_4201_reverse	34	39	29	35	54	30	54	25	46	33
GATGTGGACACCGCGG	ref_4201_reverse	65	75	63	52	77	44	79	46	83	39
GTTCGTTGTCCAACTG	alt_4201_reverse	132	195	146	144	176	134	213	84	228	135
ATTAGACACCTCCCTT	ref_4201_reverse	21	52	23	29	37	25	34	12	53	25
GCCACTTCTCGACGCC	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
GATTACCATCTAAATC	ref_4201_reverse	106	144	106	97	150	98	152	99	151	95
GCAGCGGTTGTGCAAT	ref_4201_reverse	22	40	31	24	43	22	45	26	46	15
ACATCAGGAAAAAGGT	ref_4201_reverse	41	28	64	58	24	50	28	53	29	52
TTGAGAATTCGTCGCG	ref_4201_reverse	22	26	15	16	30	23	29	22	26	19
GTGTGGCCAGGTATTG	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
TTACATAGTACCTTTC	ref_4201_reverse	6	0	9	10	12	3	7	9	7	4
AACTATTTTCCATGAT	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
CATGTCATAAGAAGAT	ref_4201_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAATTGTCTCATG	ref_4201_reverse	23	54	30	30	60	37	54	36	41	46
TGTTACAACTCTATTT	ref_4201_reverse	30	40	28	25	62	30	42	26	44	22
CTGTGTTCCGCACTAA	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTGGCCTCCAAAG	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
CAGGAGATCTGAGTTT	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTAGACACATTCT	ref_455_fdr	121	98	110	84	78	98	95	88	89	94
AACATCTTGTCGACAG	ref_455_fdr	39	35	57	41	34	53	39	43	31	27
GACGCTGGCTGCTTGA	ref_455_fdr	71	51	104	86	73	72	60	81	54	50
CATGGATTTTCTTGTG	ref_455_fdr	35	34	54	49	40	42	33	49	35	41
CCCATCGACTAGCAGG	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTGATGCATGGG	ref_455_fdr	56	49	80	52	58	66	64	50	62	54
TAGTGTGGTTACTTGC	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTCTCAGTATCCC	ref_455_fdr	2	11	2	0	12	4	10	4	21	2
ACTCTACAACGGTGTA	ref_455_fdr	22	14	33	13	21	18	23	19	28	12
TTCTAAAGTCCCTATA	ref_455_fdr	36	43	51	53	45	45	30	49	51	43
GACTTGCTAGGCGTTC	ref_455_fdr	12	17	17	15	16	18	13	13	13	18
ATGTGTCAACCGTCGT	ref_455_fdr	113	106	102	95	92	89	118	101	111	86
TAGATCGCTTATAGCC	ref_455_fdr	218	212	279	239	203	217	225	240	229	174
CGTATTCGCGAAGCTT	ref_455_fdr	14	16	28	16	20	26	14	21	15	21
AGTATTCCGGTTATAC	ref_455_fdr	11	8	10	19	15	6	17	12	18	21
AGTTAGTCTATAGAGT	ref_455_fdr	4	5	8	4	5	5	5	5	7	7
TATTTTTTCAAATAAT	ref_455_fdr	32	19	26	23	14	25	23	20	13	12
CGATCGTATCTCTGGC	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTCCAGATTTATC	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
AGATACACCATGGCCG	ref_455_fdr	6	3	6	11	2	7	9	5	5	6
TCAGCGTCCTGTAAAC	ref_455_fdr	53	74	62	65	73	50	103	56	87	38
TGCGTCTTGCATTATA	ref_455_fdr	57	57	67	43	61	51	56	54	70	57
TATAAGTCGCTGTTCA	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTTCAAACTAGC	ref_455_fdr	4	7	10	16	9	10	10	11	9	16
TAATACGCTGTTATGA	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTGATTACGGGTA	ref_455_fdr	11	9	20	12	9	15	17	13	10	12
CTATATTCCATTGTTC	ref_455_fdr	18	20	26	16	17	15	22	17	13	29
TGCCGTAAATGTGTCT	ref_455_fdr	84	62	82	77	55	64	82	60	52	60
GACCAGCCTTCGTAGC	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
TTGACCTTCTTGTTCT	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
CCACATTGATGTTTGC	ref_455_fdr	42	45	66	53	51	35	46	47	46	44
CATGTGCGTCCAGGAT	ref_455_fdr	35	22	35	43	33	32	32	36	39	16
TATCGATCTTTTGTGT	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTGTAATGCCCGG	ref_455_fdr	59	53	82	55	48	53	54	55	56	53
GATAAGCTATTTATGC	ref_455_fdr	59	38	68	56	51	67	49	52	48	60
GTGTGAGGGCTGCCTC	ref_455_fdr	19	15	20	14	16	18	15	21	12	12
AGCTTTAGGTTGCCTC	ref_455_fdr	114	98	154	110	117	120	96	128	112	109
AAGTATGGTGTGGTCG	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
ACAAGTTGTCCACCGA	ref_455_fdr	18	15	19	25	9	13	19	13	12	14
TAGATTCCTCTTTTAA	ref_455_fdr	3	2	4	2	0	4	2	4	6	2
GCATCCCGATATCGTA	ref_455_fdr	49	45	49	40	41	40	31	36	53	50
CTCTCTACGGAATTGC	ref_455_fdr	68	43	52	45	31	44	37	42	47	51
CGTCCCGATACTTTTC	ref_455_fdr	13	14	29	12	13	15	15	12	12	26
ACGCGATGTGTCTGTT	ref_455_fdr	34	30	49	37	42	43	31	31	37	35
CAATCCGGCCGTCGTG	ref_455_fdr	43	38	36	28	34	38	33	24	45	24
TTCGTTGCGTAAAATT	ref_455_fdr	1	1	2	3	0	2	7	1	2	3
GGACGGGTGTTCGCCC	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGGCCCATGCGAG	ref_455_fdr	17	9	12	15	3	15	5	13	7	11
ATTTTTCTAATCTCAG	ref_455_fdr	0	0	0	0	0	0	0	0	0	0
AGAATCATATCAATCG	ref_455_fdr	37	29	49	48	35	47	42	44	39	34
GGTTGTTAGCGCGTAG	alt_455_fdr	331	167	378	260	151	288	145	279	155	253
AGTCGGTTTTTAGTTC	ref_455_fdr	78	49	81	64	46	75	64	69	54	62
ATGTCAAGCAGGGCAA	alt_3356_upstream	142	85	170	149	96	155	89	156	122	138
TTTATACGTGGCAATC	alt_3356_upstream	26	25	48	33	25	19	13	38	17	25
CTCCTTATTTTACTGC	alt_3356_upstream	40	29	55	34	35	30	29	33	29	40
TAAGTGAACGATACTC	alt_3356_upstream	30	12	25	35	4	31	21	33	21	22
AGGTCTTTAGGCATCT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCGAGTTGGCCAG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTCTTTCTGGGCT	alt_3356_upstream	16	10	13	13	3	12	14	8	10	12
TGATTAATGGTGTTAC	alt_3356_upstream	28	14	35	22	15	35	18	26	13	15
TACCACTTGAAGTCTC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCTGCTACTTTTG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTTTCTCTTTGTA	alt_3356_upstream	35	15	37	32	23	41	22	35	24	24
TCAGGAATCAAATATT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TAGGACCCATTATTTT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTGAGGTCTGCTA	alt_3356_upstream	23	12	38	20	13	25	17	24	13	19
CTCGTGCTCGTGTCCG	alt_3356_upstream	0	0	2	1	0	1	0	1	0	1
TCGCGGCGTACAGCAT	alt_3356_upstream	20	15	25	16	17	20	13	15	15	18
ACTCTCTAGTCACGAT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCGGGTCAATGCC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGGCCTTAGCGTT	alt_3356_upstream	78	37	94	102	54	69	40	49	49	69
GTGTCACGTCGATCAT	alt_3356_upstream	33	26	41	39	27	34	22	26	30	32
CATGTCAGCCCGGAGT	alt_3356_upstream	11	12	16	10	11	19	6	19	7	19
TTGCAGCCCACTAGAT	alt_3356_upstream	23	35	41	36	48	28	40	24	45	16
GACCTTGTATACCCCG	alt_3356_upstream	8	9	6	17	10	9	9	14	15	14
TAAGACCTAGATTTGT	alt_3356_upstream	30	20	24	16	11	25	21	16	17	27
AACGCATTTGTCCGCA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTTTACAGGCCACATT	alt_3356_upstream	12	13	12	7	23	15	13	8	20	2
CAGGTCCTACTGCTTT	alt_3356_upstream	9	10	24	16	18	18	14	13	14	22
ATGGGTTCGTAGCAGT	alt_3356_upstream	125	71	135	115	76	122	75	111	64	107
ATGGCAACTATTGCTA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTGAACTCATTGT	alt_3356_upstream	27	34	44	34	30	36	25	32	23	36
CTCGTTTCCACTTCCT	alt_3356_upstream	23	19	15	21	25	16	13	13	19	7
TTGACATCACGATAAA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TCTATATATTCCTTCG	alt_3356_upstream	17	17	43	19	22	35	21	30	27	34
AATATCTTGGCGCAAC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GAATACGTAAGTCTTG	alt_3356_upstream	13	23	16	23	16	25	8	20	13	16
CTTATAAGTCTAACAG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCCCACCTTCGGG	alt_3356_upstream	110	69	158	136	84	114	93	107	77	101
CCAATCGCTTCTGATG	alt_3356_upstream	43	35	58	40	36	41	29	27	34	40
ATCGTTGTCTCTATCA	alt_3356_upstream	34	28	69	49	36	49	25	23	28	39
GTACCTGATGCGTCAT	alt_3356_upstream	12	7	22	7	8	10	13	19	12	13
TTGTTTCGTTTTTACC	alt_3356_upstream	41	14	43	32	18	34	14	23	7	29
GAGATGGCGCGTTCAA	alt_3356_upstream	3	2	12	5	3	4	4	3	2	8
TATCTCTAATCACGTA	alt_3356_upstream	51	26	40	47	20	49	22	38	27	40
GGATGTCGGCATCCAC	alt_3356_upstream	14	9	10	5	3	11	6	6	7	10
CAACGCCGCCAGCCGG	alt_3356_upstream	53	19	53	35	25	51	34	40	28	32
TAGACTAATGAATCAG	alt_3356_upstream	10	17	16	23	13	16	16	21	18	12
GCTTTGCTTTTATCTG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCGCCCTAATGGC	alt_3356_upstream	127	70	151	119	65	113	85	118	74	115
CGGAGGAAGCGTTTAA	alt_3356_upstream	133	93	172	149	76	104	64	123	85	110
TTTCGACTAAATGCAC	alt_3356_upstream	47	36	42	63	34	38	57	52	38	51
TCCAATACGAGTGAGC	alt_3356_upstream	10	6	14	11	6	8	9	9	4	12
TGTTGTCATTGGAGCA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCAGTAGGATTGG	alt_3356_upstream	54	42	55	63	43	46	38	58	42	52
AGCTCTACTCTAGAAC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CCTTACTCGCAGGCCA	alt_3356_upstream	10	13	13	11	9	10	12	16	21	11
ATAACAGCTCTGTGCA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCTCTCTTCTTCC	alt_3356_upstream	107	49	109	100	70	92	61	99	51	101
GCGCTTGGGCCCTTTA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTGAGACGACGTC	alt_3356_upstream	29	16	37	39	18	41	22	35	20	34
GTACTTCTTTAATCTC	alt_3356_upstream	31	21	28	25	19	19	13	16	17	19
CCTGGTTCCTTTGGGC	alt_3356_upstream	38	17	40	45	33	37	33	29	31	22
GTTTGGTGGAATGGAC	alt_3356_upstream	66	24	61	44	32	60	40	46	32	48
AAGTCCTGAGAGACTC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CCCTAGCCAGTTGCTA	alt_3356_upstream	40	61	50	35	70	33	67	37	63	35
GTACAGCTTGTCGCTC	alt_3356_upstream	119	142	179	157	145	136	148	161	141	133
AGGTCTTTTGGCATCT	alt_3356_upstream	26	25	59	39	26	39	28	38	28	39
TGGTCTTAAGGATGAG	alt_3356_upstream	27	19	29	20	18	16	14	17	20	15
TGTGATGTGGGTAATA	alt_3356_upstream	135	68	165	149	57	135	60	103	57	121
TTATTTTATTGGACGT	alt_3356_upstream	96	45	75	64	48	61	32	68	31	59
CTGTCATGGCAGGTTT	alt_3356_upstream	4	3	10	7	2	8	2	7	3	7
CAACGCTCTTACCCAT	alt_3356_upstream	9	8	19	23	14	11	15	12	18	11
ACATCTTCCATTGGCC	alt_3356_upstream	23	22	36	20	21	28	26	18	29	31
GTGAGAGGGAGATTTG	alt_3356_upstream	20	15	10	11	18	9	18	11	20	15
GGTTCCATGATATAGT	alt_3356_upstream	16	19	11	9	15	16	12	12	20	13
GTTGACGCCCTCGGTA	alt_3356_upstream	29	24	24	32	22	31	16	25	16	21
GCCTATCGCTTTCGAC	alt_3356_upstream	47	26	57	53	38	50	34	40	31	56
CCTTCTTACGTATCTT	alt_3356_upstream	1	3	5	1	5	4	0	1	2	3
CTCGCACAGGTTCACG	alt_3356_upstream	26	13	30	24	11	21	20	25	17	16
GACTTATAATGCCACT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TAACGACTATCTGGCT	alt_3356_upstream	9	9	7	20	1	10	5	8	12	8
ATCGCCCGCACCCTAC	alt_3356_upstream	0	0	1	0	1	3	0	0	0	1
CCGGTCAGTGTTCCCT	alt_3356_upstream	12	31	21	13	26	7	40	7	45	20
CCTTCGCCCGATGTTT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCTACCAGGGTGT	alt_3356_upstream	44	28	45	35	33	38	49	43	39	33
TCGCGACATTTCACTT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTGCCAGGCCTCC	alt_3356_upstream	0	4	3	0	2	0	2	5	1	4
TGCACTCGGGGCAGGC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTTAAGAACATG	alt_3356_upstream	9	4	16	13	10	3	16	14	9	14
ATTGGTGGAGATACAT	alt_3356_upstream	45	24	31	52	28	49	36	32	29	42
TAATGCCTTAGTTCTG	alt_3356_upstream	28	24	29	18	18	32	17	30	21	29
TATGGTTGCGTTTCCT	alt_3356_upstream	83	53	82	69	39	57	48	54	44	54
TAGAGTGCGCTAAGTG	alt_3356_upstream	92	80	143	123	106	99	76	96	95	109
TATATGTCTTGAGCGA	alt_3356_upstream	88	58	99	73	54	81	62	52	76	82
AACTCTGCCCGTTCGG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATGGAGGCACTATGTA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CGGCGACCTGCGCTTT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTACATGGCCTT	alt_3356_upstream	25	27	28	27	10	16	17	27	20	31
CAGCTTGTTGACGACC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGGTTGCCGGGAT	alt_3356_upstream	116	63	120	107	54	113	60	95	76	98
CCGTGGTCAGGACTTA	alt_3356_upstream	13	16	12	15	6	12	7	10	17	8
TACGGAATCAGCGGCT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TCGCAAAATCGTATCT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ACACGGTGTTCAGATC	alt_3356_upstream	32	42	29	43	17	39	33	28	23	31
CATTAAGCAACCGAAC	alt_3356_upstream	227	145	266	189	164	226	144	213	160	211
GCAATGAGGTAGTGTT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TAACGTTGCGACTTAG	alt_3356_upstream	55	41	69	61	39	56	35	62	35	47
TTCAATGATGGAGTCA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGGCTTGCCAGCA	alt_3356_upstream	11	4	8	9	6	11	8	14	7	12
GTCCCGAGATGGTTTT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTGACTCTTGAGC	alt_3356_upstream	129	73	147	167	78	138	99	119	84	130
AAGGTACCAATCGTGA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TACGTCGGCGGTTCAC	alt_3356_upstream	25	24	33	26	22	25	26	31	21	33
CGGGTACAGGGCCGTT	alt_3356_upstream	43	27	63	43	33	41	20	31	22	53
GGCTTGTTGTATATCG	alt_3356_upstream	19	11	16	22	10	13	18	22	7	17
GCATCCCGTGTTCCCT	alt_3356_upstream	19	16	28	26	18	27	14	31	20	22
CCAGCTGCTGCTACTG	alt_3356_upstream	24	35	21	24	31	30	25	26	24	23
GCCTAGCAGGGCAGTG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GATCTCCTTGCGTTCG	alt_3356_upstream	43	29	30	17	27	36	27	33	21	31
CCCATGTGTAGTTCTT	alt_3356_upstream	14	29	40	29	44	23	30	25	28	13
ACAAAGTTACTGACCT	alt_3356_upstream	0	0	0	0	1	1	2	0	0	2
GTTGTGCGGCAACGGC	alt_3356_upstream	59	36	86	48	29	55	34	33	33	60
GTAGCCTATAAGTTTA	alt_3356_upstream	18	6	14	8	7	8	8	7	8	3
CGGTAGAGTGTCTAGC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ACAGATTTCACGTAAT	alt_3356_upstream	139	77	179	129	109	132	113	139	99	128
CCTTTCAAGTCTCGGC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TCTATGTACCTGCCTG	alt_3356_upstream	10	1	9	6	1	2	3	4	3	5
ACAGGTCATTGTCTTG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTTCCCGGTTCAG	alt_3356_upstream	2	13	8	3	23	6	11	5	8	2
TTGTCGAGGCATTAAA	alt_3356_upstream	398	230	471	425	266	376	277	390	261	375
GGCTCGGTATTCTCAG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CGGCGCATGCACCTGT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGGAACGTGACCTACT	alt_3356_upstream	10	11	12	13	8	10	8	4	8	13
GTGAAGGTTGCTCTAG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGTCCTTAGAAGC	alt_3356_upstream	26	13	27	29	12	24	14	13	23	32
GTTTCTTTTGACCAAT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTTGTGGTTTTAA	alt_3356_upstream	37	45	45	46	32	36	29	33	28	41
CTCGCCAGTCAACTAA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGGGCTTCTGGGATAA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAATTTCTTTAGC	alt_3356_upstream	84	39	80	65	36	53	46	63	41	38
ATCGTAGAGATAATTA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CCCATAAGCGATTCCG	alt_3356_upstream	155	73	154	146	88	156	87	141	76	135
CTACGGTTAGGGTGAA	alt_3356_upstream	43	13	46	29	32	16	22	28	16	34
TGAAGTTTGTCATATT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTATTGACTGTAGCCT	alt_3356_upstream	141	111	178	142	98	137	94	145	102	131
ATGTCGTTACAGACCT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATTAAAGCTATGCATA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTGACCAAGGATGGTA	alt_3356_upstream	13	16	21	31	18	19	30	9	7	23
GTAAACGAACGCGCAG	alt_3356_upstream	13	13	12	7	7	13	11	11	10	10
GCGTACTCATTCAGGT	alt_3356_upstream	8	1	5	3	0	7	0	5	2	3
CTGTTGCACGATCCGC	alt_3356_upstream	33	21	57	38	32	40	30	30	21	44
AGCTTGTCTCTTGAGC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGCTGTCCAGTC	alt_3356_upstream	38	28	48	39	33	37	23	29	29	22
TTCACGGTTATTGGCT	alt_3356_upstream	372	204	450	386	231	305	239	354	232	323
GCCGACTTCATCTTCT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTTTTCCGGCTTG	alt_3356_upstream	33	24	47	38	32	50	26	63	26	34
TCTTATCCGACCAACT	alt_3356_upstream	199	105	228	208	94	182	115	184	114	206
TGCCCTGGGCAGAGAA	alt_3356_upstream	35	25	49	58	32	42	28	32	19	33
ATTCGATGTAGTGCCG	alt_3356_upstream	20	15	26	26	14	20	14	19	13	24
ACTTCTGTCAGCGCCG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GTCTAATCTTTCTGCC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CGTTAACTTTTCTCGT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGGAATCCACTCT	alt_3356_upstream	78	51	83	95	60	75	58	77	67	50
AGCATCCTGACTGGGG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GGCACATTGCTTGTCT	alt_3356_upstream	19	14	17	18	13	12	14	9	11	15
GAGGTTTATGGGGTTG	alt_3356_upstream	23	16	39	24	16	24	26	31	24	21
GGATAACGAATTTTAG	alt_3356_upstream	15	3	17	11	12	14	8	13	14	17
AGGGATCCTGGTGTGT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGCTATTAGGTGT	alt_3356_upstream	40	30	72	62	31	48	39	46	37	44
TCTTTGTCGTTTCGCT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TTTACGAGTGATCATC	alt_3356_upstream	4	8	2	1	6	0	3	3	3	3
GGGGGGTACAAGTGCT	alt_3356_upstream	50	27	62	52	31	51	49	51	36	41
AACGTCTAAGCAACTT	alt_3356_upstream	12	7	10	8	5	8	5	9	2	4
CGCAAACGACTACACA	alt_3356_upstream	5	5	6	2	2	5	2	3	3	3
CCTATAGGCTGTCAAA	alt_3356_upstream	36	67	31	23	48	18	81	27	46	29
GTTTATTCGCCTTCTC	alt_3356_upstream	115	63	165	145	64	111	55	117	85	113
TACGGTCTCGGGGTTT	alt_3356_upstream	0	1	0	0	1	0	0	1	1	0
GTAGGTATTCTGCGCT	alt_3356_upstream	8	7	13	5	7	11	10	10	3	11
CAGGCCTGACGTTAGC	alt_3356_upstream	41	42	64	73	50	51	43	55	67	51
GATACCGTTACGTAGT	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
GGGATGTCCCCTCCGC	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
AAATCCGATAGTATGG	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
TATTCACGATGCTGAA	alt_3356_upstream	51	24	63	45	31	71	39	55	39	54
TTTCATTCACGTTTTA	alt_3356_upstream	19	10	27	25	9	25	12	20	8	18
CTGACTGCGAAGGATG	alt_3356_upstream	15	23	31	26	24	26	22	20	31	22
TTATAGAATTCCCTGA	alt_3356_upstream	16	13	14	17	14	12	10	15	5	12
ACCTGAAAGACAATAG	alt_3356_upstream	111	53	96	113	53	83	66	60	48	79
GCGAGGAACATTCCCA	alt_3356_upstream	0	0	0	0	0	0	0	0	0	0
AGCAGTAAGTTGCTAA	ref_378_reverse	43	53	37	50	46	34	53	43	46	41
AACTTTAGAGTATACC	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GGCATTCGTTTTGTGA	ref_378_reverse	7	11	7	8	8	7	16	4	19	5
TGTATCGGCCCATATT	ref_378_reverse	6	4	12	4	8	5	6	7	2	10
ATCTCTGACCCAACAT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
ACGTATGGGCGAATCA	ref_378_reverse	28	48	49	47	51	40	47	40	43	34
TAAGTTCTGAAGCGTC	ref_378_reverse	32	49	54	29	57	33	60	42	57	41
CATTTCATCGGTCGAC	ref_378_reverse	4	3	2	6	5	7	10	4	3	7
ATGGTCGGAATCGCAA	ref_378_reverse	35	58	72	49	58	45	48	44	64	46
GGTACCACCGGTATCT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
CAATCGGCTTTTATAC	ref_378_reverse	59	63	57	38	58	48	85	39	86	56
GAGCGGCGACTCATAA	ref_378_reverse	18	17	35	23	22	16	21	24	27	10
TCGCCTGTTTTGATTC	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TGAGATTACTGTACAT	ref_378_reverse	18	28	27	31	39	32	49	30	39	21
TAAGTTTAGTGCTTGA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CTGATGTCCCAACTGG	ref_378_reverse	1	3	8	6	3	4	5	7	6	6
TATTGTTATATACGAG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGCTAGTGCGCGC	ref_378_reverse	36	65	40	42	43	36	53	35	60	33
TTGCTGGCGCGTTTCT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCTACCCTGTCCA	ref_378_reverse	34	67	62	70	75	51	67	59	86	53
TTAAAGCTATGACTCG	ref_378_reverse	44	61	70	39	93	48	67	42	67	38
ATGTCTTGTTGCGTTT	ref_378_reverse	15	16	13	13	21	11	19	8	14	14
GACTTGATAACTCGAA	ref_378_reverse	52	80	89	74	78	62	112	61	120	71
ATTCCCCATTTGACCC	ref_378_reverse	78	121	95	100	122	93	146	70	127	75
GCCATACCCTCATGCC	ref_378_reverse	19	14	18	10	17	13	18	12	11	12
AGCGAATGCAGAAGCT	ref_378_reverse	18	17	29	22	26	18	29	29	25	22
CTGCTTAGTCTTATTA	ref_378_reverse	66	72	86	72	68	48	79	55	75	62
CATTTACCTTATCGCT	ref_378_reverse	3	2	2	1	6	1	3	2	1	0
ACACTCTTTGTCTTAA	ref_378_reverse	25	32	17	20	23	21	24	12	31	23
TGGTAGATTCATGGGT	ref_378_reverse	369	334	395	355	356	300	336	310	369	299
AATAGTCGTATTCTAT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TACTGTGTCCTCGATA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTATCACATCAG	ref_378_reverse	5	10	5	1	4	3	6	1	3	4
CCTTACTTCTTGAAGG	alt_378_reverse	85	107	89	81	103	69	88	77	95	68
GGTTCATCCTCCTTAT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTTAAGAGCGTCC	ref_378_reverse	7	16	9	19	7	12	9	6	9	7
TCCGCCCAACCGGCTC	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TGTGAGTCCAACGGAG	ref_378_reverse	3	3	3	2	3	1	2	3	3	4
GATAACTGACGTTTCT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TCCGACATCGTATAGA	ref_378_reverse	101	130	115	104	128	87	92	94	104	104
TCTTTGTGCTTTCAAT	ref_378_reverse	96	98	110	91	109	75	104	94	145	58
TGGCAACGGGATTCGC	ref_378_reverse	18	14	27	17	6	21	27	26	31	24
ACGGGACTAAGATTTC	alt_378_reverse	92	88	101	91	84	91	97	81	90	63
ATATGGCCCACCGTTA	ref_378_reverse	3	7	5	5	8	2	2	3	3	2
CCTTATGTCGTCGCAT	ref_378_reverse	5	12	12	5	4	5	6	7	14	15
CTGAGTTATGCCATCC	ref_378_reverse	37	49	33	52	56	33	65	43	49	38
GAACTGGCGGTGTTTT	ref_378_reverse	30	54	56	38	51	32	58	55	53	47
GATGAAGTCAGTCGCT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TTAAATCATCCACGGT	ref_378_reverse	54	68	79	84	68	65	57	73	76	59
TGAATTGGTAATTACC	ref_378_reverse	9	7	10	9	5	7	9	6	13	10
GTCTTCGTTCTCACCA	ref_378_reverse	15	13	10	8	7	19	12	7	13	12
TTGTTGCCTCTCGATA	ref_378_reverse	98	135	106	115	110	111	144	77	143	77
ACGGTTTTTGTTCGGA	ref_378_reverse	52	75	81	53	74	52	54	56	84	51
TTTTCGTTGTGTACAT	ref_378_reverse	59	64	84	50	63	73	66	45	70	49
ACGCTTCCGTCCATGC	ref_378_reverse	34	27	48	36	57	29	46	25	40	34
TACGATCTACTCATTA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
AGCGAGTTGCTCTCAT	ref_378_reverse	32	28	31	22	37	31	41	38	54	23
GACCAAAATATGTTCT	ref_378_reverse	103	79	115	108	101	109	99	93	126	117
ACGACTTTCATTAACC	ref_378_reverse	41	46	59	45	43	37	48	40	49	47
TCGAATTATGAGTACG	ref_378_reverse	38	69	35	43	50	32	58	42	53	43
ATCATAGCTAACTTCT	ref_378_reverse	7	6	12	3	6	1	3	6	8	4
TGGCGCAGGTCTGACA	ref_378_reverse	9	3	5	4	5	6	5	3	4	8
GTACGTAGGACCAGGG	ref_378_reverse	18	22	11	14	6	20	21	14	16	11
CTGATACATGGAGCGA	ref_378_reverse	61	78	65	64	61	56	70	54	66	61
ATTGGCCGTCGGTCGG	ref_378_reverse	3	6	5	4	4	0	5	5	7	4
CCGCTACCTAATGCTG	ref_378_reverse	54	87	84	77	88	45	97	61	105	55
CTTTTTTACGCCCTTA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GGATGTTCCTCTCTTA	ref_378_reverse	24	26	27	20	28	21	36	24	28	32
GTTATTTCGTATGCGG	ref_378_reverse	8	11	18	9	13	12	16	12	14	12
GATACTATATGTAACT	ref_378_reverse	19	26	25	22	24	33	46	26	34	20
TACCACTGCGCACCCT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGTTATGGAGTGT	ref_378_reverse	34	34	44	32	27	36	42	21	50	26
GAGTGGTTCTTCGTAA	ref_378_reverse	34	55	58	48	50	40	47	40	54	40
AATCACGCCTTCACGT	ref_378_reverse	103	127	146	131	145	95	131	104	111	107
CTTATTGGCTCATTAT	ref_378_reverse	7	1	3	1	2	3	5	6	1	1
GGCACATCACTAATTT	ref_378_reverse	42	27	31	29	36	18	34	31	34	20
TTACTCTTTATAACCG	ref_378_reverse	52	70	67	52	55	64	96	40	93	57
TTCTTCGTGCGTTGGT	ref_378_reverse	8	13	12	6	10	6	8	4	6	4
ACTCCTCTACGGAACA	ref_378_reverse	27	21	25	14	40	18	29	14	32	16
ATGAAACATTACTTTC	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCTGGTGTCCCCG	ref_378_reverse	24	46	23	14	29	14	30	18	33	23
TTTTCAGCAGGTTCGT	ref_378_reverse	1	5	4	5	0	3	6	1	3	0
GCCATGGTTTAAAGTA	alt_378_reverse	8	1	4	2	4	1	4	2	8	0
TCCGCACATAAATCTT	ref_378_reverse	18	10	23	18	19	19	18	11	21	20
ATAGCATACTTTTGTG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGTACCGTTTCAG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
CAAGGATGATAGGCTG	ref_378_reverse	23	30	37	42	34	35	35	37	31	26
TACGAGTGAAGAACAG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAAGGGAGGCAAA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
CATCATAAAGTACTGA	ref_378_reverse	190	210	234	196	227	189	237	184	240	172
CCATGTGAGATGATTT	ref_378_reverse	10	15	6	9	15	6	26	6	21	12
TTTGGAAAGATTGTGA	alt_378_reverse	41	47	42	32	46	35	57	37	48	34
CCCACCTTTGATATAT	ref_378_reverse	1	6	5	0	3	4	6	1	4	5
GATTAAACAGCTCCTA	ref_378_reverse	5	3	7	5	4	7	6	7	6	2
GCTTGCTTCCCTGGGC	ref_378_reverse	10	15	18	15	18	16	12	25	26	10
GTGTTATGGAATGCAA	ref_378_reverse	39	49	46	43	60	35	54	37	50	38
TCCACCGCATCAAAAT	alt_378_reverse	38	34	39	32	47	39	29	32	53	42
CTAGTGGTTTCTAGAA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
AGAACGTATTTTGAGT	ref_378_reverse	4	8	3	7	8	6	7	0	5	2
AGGAAGCCGGCACTTG	ref_378_reverse	71	84	70	71	94	65	91	51	98	52
TCTTGCTCCTCGCAGG	ref_378_reverse	17	22	16	8	26	11	10	15	25	13
TTGTCGTGAGAAGCGG	ref_378_reverse	61	54	54	49	60	47	50	36	65	44
GAACATCGTCCCCCAC	ref_378_reverse	39	41	52	45	46	29	67	31	63	37
ATGTAATCTTCTCCCC	alt_378_reverse	54	138	46	46	118	47	114	47	123	31
TGGTTGACGGTTATCA	ref_378_reverse	5	11	14	17	9	13	23	16	12	8
GTGCCCGTACAGATCA	ref_378_reverse	12	13	16	9	10	12	19	18	16	13
ACATGCATACACTAAA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCCCAGTCGCTAG	ref_378_reverse	23	22	32	26	19	12	22	16	25	23
TAGCGGTAATGAGCAT	ref_378_reverse	32	35	43	34	56	36	42	34	57	29
TTTTCGCATTAAACCG	ref_378_reverse	15	20	27	16	35	22	24	27	22	25
ATTCTGCTATCTAGTT	ref_378_reverse	7	10	9	12	10	10	13	7	11	8
AGCTAACTTGCGGGAA	ref_378_reverse	6	8	16	4	18	14	13	9	11	8
AAGCTAACGGTATGAC	ref_378_reverse	23	25	28	15	28	26	28	33	23	16
TTTTTCGGGGGGGTAC	ref_378_reverse	38	26	29	31	29	19	32	30	32	21
CTCCAGGCGCGATGGG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GTACCAATGCTTTTTG	ref_378_reverse	32	53	34	39	61	53	47	38	69	35
ACCGCGGCTTCTAGGG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GGATATACGCGATGGA	ref_378_reverse	75	56	79	80	58	68	64	58	51	50
CAGGCTCACATGGTGG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
AGCATCGGTAACTGAG	alt_378_reverse	56	89	72	71	94	56	117	68	92	61
GGACCCTGTTTCGGTG	ref_378_reverse	6	19	17	8	25	20	15	9	19	5
TCGCACCGTCTTTTGG	ref_378_reverse	10	14	7	8	17	7	12	9	18	9
CTAACGCCCATGAGTC	ref_378_reverse	19	25	27	15	24	24	16	23	16	13
CCCTAATAGCTTATGC	ref_378_reverse	2	20	5	3	27	6	24	4	18	6
TGTAAAACATCTGCAC	ref_378_reverse	22	27	24	16	18	19	21	22	21	21
TCGCGACAATTAGCGG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTCAGGAACTTAC	ref_378_reverse	7	20	7	5	4	5	9	7	14	8
AGTTTTGGTGCGTCTG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCAGTGACCTGCC	ref_378_reverse	28	29	28	20	28	25	32	32	37	28
CTTTATTTGTCGCTAA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTCATGAACCAGG	ref_378_reverse	73	70	65	63	80	51	63	59	77	59
CTAGTAATGCATTTCA	ref_378_reverse	4	6	9	12	14	10	23	10	6	6
GGATTTGGTCGTTAGC	ref_378_reverse	245	290	290	233	282	210	277	213	299	215
TTAGGCCTTTCTCAGC	alt_378_reverse	10	12	14	13	18	7	9	12	25	9
GGTATGTAGTTGATTA	ref_378_reverse	111	160	139	121	162	139	157	121	180	137
CAAGTTGAAAGAAGAG	ref_378_reverse	61	60	54	57	65	48	84	54	88	69
ATTTCTGATCCCTGCT	ref_378_reverse	22	25	8	16	24	19	23	17	26	23
GCGCATAGCGTACGTT	ref_378_reverse	54	78	66	59	66	60	90	46	107	63
TAACACACACAGGCGG	alt_378_reverse	13	26	23	16	30	15	23	9	23	16
TATTGTTATATACGAA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TTGTATCGTTAATCAT	ref_378_reverse	3	4	5	5	2	5	2	2	3	5
GAATATCAATAGCTAG	ref_378_reverse	10	14	18	11	10	6	14	8	12	8
TTCTAGCGCGGGAGAC	ref_378_reverse	9	10	19	15	16	11	16	4	18	15
GCGTGCCCAGCTAGAA	ref_378_reverse	13	12	19	12	10	6	6	14	25	11
CTTCAATCCTCCTCCG	ref_378_reverse	6	11	15	12	9	12	31	10	21	4
GGTGTAGTGCCGTTGA	ref_378_reverse	3	5	2	4	2	0	3	4	4	5
GCGTTTTTCTAGTCTT	ref_378_reverse	20	18	15	14	39	8	16	13	21	14
GCGCTACGTGGAACGG	ref_378_reverse	22	6	13	16	15	18	17	10	17	8
TCTTGGCACTTTAACG	alt_378_reverse	23	39	32	32	39	22	41	22	42	22
TTTTAAAGGCACTTTA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TCGTAGCCGACTCGCT	ref_378_reverse	58	57	55	61	61	45	73	62	63	56
GTCCAGTAATTGCGGG	ref_378_reverse	25	40	25	27	41	23	44	20	31	19
GTTAGCTCAACTCAGA	ref_378_reverse	5	11	13	6	10	6	7	6	7	3
TTGTGTTAACCCGGAT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCTCCCTAGGCTG	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GCACGTCACACCTGAA	ref_378_reverse	6	21	15	25	19	7	18	15	12	25
TGCATTATAAAGGATA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TGAAAGGACGCTACGA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGTGGGGCGGAGT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCATCTGCGCCCC	ref_378_reverse	23	34	31	19	39	19	53	25	41	26
AATCGCTGATTTTTTT	ref_378_reverse	48	42	43	34	49	38	36	37	40	34
ATCCGTGGACAAACAT	ref_378_reverse	11	16	16	13	15	19	16	13	21	16
TTCGACTCGCATACTA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCGGTTCCTCCCC	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCGGCAATCTATG	ref_378_reverse	0	1	0	0	1	0	0	0	0	1
CGTGTCCTAAAGCTGC	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTTCATCTATAAT	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCTTTAATTATAT	ref_378_reverse	54	39	62	50	43	58	54	58	56	56
CCGCTCAGAGGAATAT	ref_378_reverse	1	0	5	2	3	1	1	1	1	2
CCGCGCACTGCTGGTC	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTTCTTGTATACA	ref_378_reverse	28	31	38	20	30	37	25	33	31	28
GTGGTTTCCGGTTTTC	ref_378_reverse	36	33	47	39	31	35	47	33	44	32
ATCGCTAGGATGGTTT	ref_378_reverse	24	38	31	20	56	35	40	24	32	27
CGGGGTTGTTCGTTGG	ref_378_reverse	35	18	29	29	22	24	36	25	24	29
CAGCACTGGTCGTGAT	ref_378_reverse	3	9	2	4	6	2	2	3	5	0
GATATCGACTTTGACA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTGTGGTGCGTAT	ref_378_reverse	1	4	4	4	0	1	0	1	0	0
ATCACTACGTATTTCA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
ATGTAGAAGCTGTAGC	ref_378_reverse	70	104	80	83	101	64	90	72	84	65
TCTTCGCAAAGTCGGT	ref_378_reverse	44	46	48	34	37	38	41	37	38	32
AGTACGCCCTCTCATA	alt_378_reverse	36	32	41	36	21	35	28	33	34	27
CAACGCTTAGATGCAC	ref_378_reverse	23	27	23	14	23	11	31	12	31	21
CCAATTGTCCATCCAT	ref_378_reverse	48	42	55	46	46	52	48	44	50	36
CAAGGCGGTCGGTTTC	ref_378_reverse	60	75	102	73	68	64	81	62	82	71
CCTTCTTTGCTTTAGA	ref_378_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCTTAGTAATGAA	ref_378_reverse	15	21	26	11	19	16	30	24	21	19
TTGCACAAATCCCGGG	ref_2040_upstream	170	287	186	201	294	190	311	175	351	154
CCGCTAGATTCTTTTT	ref_2040_upstream	19	32	24	17	15	15	31	7	37	10
CCTGGCAGCCAGCATT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
ACTACCTTGCCCTGTC	ref_2040_upstream	8	16	8	1	9	7	16	10	22	5
TAAAACTTCTACGTGC	ref_2040_upstream	37	48	36	30	57	31	55	35	54	27
ATCATAGTTAGTAAGC	ref_2040_upstream	26	33	29	24	44	18	54	9	31	20
GATACAGCCGCAACGA	ref_2040_upstream	41	95	60	33	106	48	99	54	102	50
GGCCCTCGGTCTCACG	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCCGTACGGTTAT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CGCACCAATCGTTGAT	ref_2040_upstream	25	76	41	31	69	28	71	36	66	33
TTGATCCGTTTGGTGG	ref_2040_upstream	7	13	8	4	19	6	16	6	16	5
GTTTTTCTGTGAACTG	ref_2040_upstream	12	29	12	24	20	7	39	15	22	17
TAGGCGTATTTCTGGA	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TTACGGGCTAAGCATA	ref_2040_upstream	11	26	22	14	48	14	32	11	34	12
CATGCCTCGGTCCGAT	ref_2040_upstream	2	3	3	5	6	4	5	3	9	3
TTAGCGCTCTGGTTGA	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGTATGTTAATCG	ref_2040_upstream	16	35	26	22	44	21	36	15	40	17
AGGTGGAATACTTATG	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCGTAATACGGC	ref_2040_upstream	11	18	15	12	15	3	16	13	20	14
AGCATTCCTCCCCGCT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CGTAGATAGTGTAGTG	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCCGTTCGTTTTA	ref_2040_upstream	56	106	83	79	85	44	110	55	87	52
TGGGAGTTGACGAGCC	ref_2040_upstream	4	3	2	2	1	1	10	1	6	2
ATTTATGCAAGAACTG	ref_2040_upstream	18	26	10	9	24	8	20	8	22	14
TTCCCCAAGCATGATG	ref_2040_upstream	29	60	50	32	57	47	46	21	67	25
GTTACGCGATGATTGT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TTAACCGCCCAACACT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTGGGACTCGTCA	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CTGAAATGCGGTTTAT	ref_2040_upstream	27	48	33	24	60	23	52	24	53	22
TTGAATAGTCTCGTGT	ref_2040_upstream	36	67	35	28	80	42	56	33	59	25
ATGGTGTTTAGAGCTT	ref_2040_upstream	15	24	21	8	26	16	28	9	28	8
CCGATGGTTCGCAAAG	ref_2040_upstream	11	28	13	12	39	9	40	15	41	7
ATCGTTCTTGGTTGGT	ref_2040_upstream	53	84	45	38	93	58	95	43	105	44
ATTTGTGGGGCACTCG	ref_2040_upstream	43	81	63	48	79	50	81	35	78	45
CGGTTTATGGCCGGAG	ref_2040_upstream	11	19	14	6	19	7	18	7	14	3
CCCATTGTACAAGGCC	ref_2040_upstream	19	42	28	21	33	8	39	20	44	13
AAGGCGGTACTGTCTG	ref_2040_upstream	3	4	6	4	10	6	12	2	8	6
CTCAACGGGTCCTGCA	ref_2040_upstream	7	8	5	9	9	1	10	6	5	3
CAGGTCCATTCTGCGA	ref_2040_upstream	20	53	27	24	54	28	61	39	70	21
ATCTGGTGCAGTTGCA	ref_2040_upstream	21	40	29	25	43	18	46	21	49	13
TTACGAAAGGTTATTC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCTTGCCGATCTG	ref_2040_upstream	2	7	4	3	9	2	9	2	3	4
TTCATCATAAGTAAAA	ref_2040_upstream	21	31	14	21	43	14	41	15	36	15
CTTTGCGCTGATTTAC	ref_2040_upstream	221	440	269	242	478	223	438	225	508	230
TCACGCTCTTTCTTTT	ref_2040_upstream	24	56	37	28	59	30	56	30	52	29
AATGTATAACAGGGTC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CATAACTCTCCACCCA	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGTGGACCTGTCT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
GTATCACCAGATATGA	ref_2040_upstream	9	15	8	6	15	16	14	13	18	8
GTGGGTTTTTTTGATT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TGAACTAACTTCTGTC	ref_2040_upstream	2	2	7	4	5	3	7	2	8	1
TGATTCTACATCAGCG	ref_2040_upstream	16	33	20	10	36	28	32	20	34	12
TCAACGATGGCATCCG	ref_2040_upstream	40	63	39	29	50	28	51	25	61	34
GTTAATCGGATTAGAT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TGAATACGGAGTTGTG	ref_2040_upstream	16	28	24	17	33	7	25	4	35	21
TGATAGCTTAGCTTGG	ref_2040_upstream	8	7	8	10	8	7	11	7	22	4
CTCCGGGCCTTTATTA	ref_2040_upstream	69	156	96	58	159	56	136	71	167	71
AATCCTGATAGCACAG	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TCTATTCGATGCTGGC	ref_2040_upstream	18	51	34	29	39	14	38	19	44	20
CCTTGACTTTTGCGGT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTTCCTGAATAGT	ref_2040_upstream	15	31	23	13	49	8	33	11	55	11
AGTCAATACCTAAGGC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGGCGTATCTGTT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CAGGATATTTTAGGCT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCTATGGCCGGTC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCTATGGCCGGTC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
ACGACACGGGACGAAA	ref_2040_upstream	16	35	20	13	30	22	29	12	45	14
TGATTCTAAATCAGCG	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
AATTAACGGCTGCATC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTTATCCTGGCTT	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
ACTACCTCATCGCCCG	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTTGTGGGGTAAA	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCGGTGCTCCATC	ref_2040_upstream	0	5	6	1	0	1	4	1	3	2
GTTTAACAGATATTAC	ref_2040_upstream	8	21	13	11	19	18	16	15	21	6
GTTGCAGTCGCGTACC	ref_2040_upstream	10	12	15	11	14	11	14	20	13	14
ATCTACTCATTTCACC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
ATCACATTAGCGTCGC	ref_2040_upstream	14	9	15	6	18	11	12	8	14	7
TGATATATAGCGGGCC	ref_2040_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGTACATCTACAA	ref_2754_RC	12	15	27	22	19	16	18	22	23	13
CAACATTCGTAATAAT	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
CGGATGGGTGTCTAAG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
AGGTTGAACCGCGTCG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
CTCATTAGCGGTCAGG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
GAGTTATAATCAGTAA	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
ATTTTAAATTGCAGCC	ref_2754_RC	19	20	27	20	12	26	22	14	23	23
ACTTCTCGGGACCCGA	ref_2754_RC	11	8	5	8	11	4	11	7	17	6
GATTCTACACGCCCAT	alt_2754_RC	100	161	103	109	154	84	163	62	195	80
GCTAATCTCGTTAGCA	ref_2754_RC	30	24	28	29	31	13	32	25	32	25
TGAGCCTCCGGCTGAT	ref_2754_RC	13	18	25	15	14	9	15	13	18	15
GCTCAAGCACTACTCG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
CTTGGCTGCCATGTGA	ref_2754_RC	81	75	76	67	83	66	64	65	63	48
GGACAATAAATGTGAG	ref_2754_RC	5	10	10	6	14	8	4	7	6	4
GAGAAACCTGTCGCTT	ref_2754_RC	93	61	138	115	54	112	50	95	64	99
AACGAGGAGTTCCATT	ref_2754_RC	36	32	27	34	38	15	38	32	31	21
CGTGGCTACTCCGTTT	ref_2754_RC	5	12	11	9	3	5	6	1	10	8
CTACGGATTTCTTTAA	ref_2754_RC	3	11	13	8	15	5	14	12	7	3
GAAGGGTCTTCTTAGA	ref_2754_RC	35	30	46	28	43	23	29	43	33	26
GTAGCGGAGATACTCG	ref_2754_RC	76	127	111	116	100	96	104	113	142	78
AAGTGCACATGAAGAC	ref_2754_RC	9	23	13	8	12	14	22	9	16	7
ACAGCGACGCACTATT	ref_2754_RC	29	38	29	36	43	26	43	30	46	25
TTTACCGTCTGGGATG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
TGCGCTTGTAATCGAA	ref_2754_RC	57	68	64	55	68	63	80	67	79	65
CCTGGCCCTTAACACG	ref_2754_RC	9	13	12	5	11	3	9	6	17	2
CCTGATCATTGACACT	ref_2754_RC	10	13	11	18	22	9	21	13	19	9
ATCCTTTGGCAATCTG	ref_2754_RC	2	5	4	2	5	2	6	2	4	5
CTGCACGCAAATCCTA	ref_2754_RC	15	12	20	12	12	18	20	9	16	7
TGGGGCTTGTTCATTG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
GATCTGGCTCTAATAG	ref_2754_RC	38	36	51	46	57	38	37	29	58	45
TGTTACAGCGATATAG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
ATACGAGCCTAAGTCC	alt_2754_RC	176	218	213	224	236	176	224	175	224	184
TAATTCGCCATACCTC	ref_2754_RC	5	4	9	6	5	16	6	4	6	10
TTTTGTCCCTGTAGGC	ref_2754_RC	38	35	42	34	34	31	28	25	60	27
AATTAGCACATATGAA	ref_2754_RC	12	32	37	24	20	11	25	28	23	22
TGATTTGACGGACATC	ref_2754_RC	4	5	5	7	5	8	3	5	9	6
AGGTTAAGATATGTCG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
GGCTTTACCTAGGATG	ref_2754_RC	50	44	49	40	44	39	52	34	56	39
CGTACGGGAAGTCTCC	ref_2754_RC	56	41	49	41	65	36	61	37	51	53
CGTCTTTTTATATTTA	ref_2754_RC	93	72	104	78	72	79	74	69	75	80
CTAAGCTTCAGATATT	ref_2754_RC	13	6	3	8	6	9	8	7	10	4
TTTGCGATTTCTGTCG	ref_2754_RC	25	21	30	22	19	23	17	18	30	18
TATCGCGTATAAGTCA	ref_2754_RC	21	36	38	35	47	22	41	28	36	21
CCGGACTCGGTAGTAG	ref_2754_RC	6	5	5	3	2	7	7	6	4	0
TTCAAGTTGGAAGCAA	alt_2754_RC	30	35	40	49	40	40	40	22	40	41
ATGCATATTAGGACGA	ref_2754_RC	61	80	82	48	53	49	69	47	77	37
TGTTTAGTTCGTTAGT	ref_2754_RC	25	49	22	29	24	28	32	28	39	19
GTAATGACCGGTATTA	ref_2754_RC	14	19	20	11	20	7	15	17	17	12
ATCGCGACAGAGTGGA	alt_2754_RC	17	26	20	29	20	9	41	14	26	15
AGCGCTATATTTTAAG	ref_2754_RC	48	71	69	51	74	66	60	42	74	49
CGACAGGCAGCTTTCC	alt_2754_RC	11	28	23	17	28	18	27	19	28	16
TGCTTCTATGTCTGCC	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
TTCTTAGTTCATCTCA	ref_2754_RC	2	3	5	3	12	1	16	7	9	0
TTGAGCGTTAGTCAAG	ref_2754_RC	67	83	84	60	83	70	85	53	98	67
TGACTGGTGACTAGGC	ref_2754_RC	54	50	47	50	61	48	52	40	60	30
TGCACTGCCCGTCTCC	ref_2754_RC	73	94	96	83	88	68	125	59	122	64
CAGTGCCCAGCGTATC	ref_2754_RC	55	65	70	63	79	58	64	61	75	52
TCTTCACGCCCTGCTC	ref_2754_RC	42	48	73	43	41	33	59	36	58	29
CGTCACGAGCCTGTAC	ref_2754_RC	8	17	8	13	10	11	14	4	9	11
GTTCCCCGCACGCTCT	ref_2754_RC	9	25	18	8	20	10	37	11	26	13
TGAAGCCCGGCTTTTT	ref_2754_RC	11	17	14	11	10	15	18	12	16	7
TTCATCCTGGAACGCG	ref_2754_RC	25	42	30	26	47	37	63	27	57	28
CCACGTTAAGTCATTA	ref_2754_RC	106	124	132	109	145	110	144	119	150	111
TATGCCGCTAATAACC	ref_2754_RC	17	19	10	21	17	19	24	13	23	11
GGTAATTGAGATGTAA	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
TAAGCCTACAGGGCTT	ref_2754_RC	10	28	16	19	15	12	18	17	16	21
AACGACTTGGAAGGTT	ref_2754_RC	6	4	8	9	9	6	7	4	3	2
AATCTGAAACCGCTTT	ref_2754_RC	32	21	20	22	28	24	22	34	36	27
TCTAGCGACTGGGAGA	alt_2754_RC	113	125	131	130	132	126	147	135	132	109
GTCCGCTTACTGTTCT	ref_2754_RC	11	9	14	11	11	7	7	4	8	5
GTTGGTATGCTCATGC	ref_2754_RC	75	55	76	67	54	57	68	60	62	55
AATCATCGCGTGCATA	ref_2754_RC	13	15	15	20	20	14	23	11	10	11
ACCACGGTTAACCAGA	ref_2754_RC	128	135	150	110	161	124	157	106	190	114
GTGACTGGCCTTCTGG	ref_2754_RC	2	11	1	1	13	2	17	16	13	2
TCTTAGCGTTTGTACC	ref_2754_RC	34	37	46	35	52	32	46	36	51	25
GTAGGTAGGGCTGTGA	alt_2754_RC	9	10	7	3	11	10	15	6	10	4
CTTGGTGCCGTAGGCC	ref_2754_RC	20	34	30	38	34	24	30	25	35	29
CGAGGGGCCTTGTAAA	ref_2754_RC	13	42	27	20	38	19	31	23	21	17
GTTGTTTTTTGGCTGT	ref_2754_RC	24	20	29	28	17	14	12	24	16	16
TGTTCCGTAGGTTCCT	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
GCCTAATCGGTACTCT	ref_2754_RC	80	110	88	73	126	58	126	64	122	54
CGTTTACCACGGTTAT	ref_2754_RC	13	10	20	13	15	15	21	8	17	9
ACGACTGTCTCAGTAA	ref_2754_RC	20	38	24	32	29	20	33	28	26	31
CTATTGAGCCTGTGAT	ref_2754_RC	11	28	22	12	18	9	24	18	20	12
TATGGGTGTGTACGTT	ref_2754_RC	13	12	30	31	16	20	23	21	23	19
GTTCCCATCTTTCACG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
GGTTGTTCCATGAGCT	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
GGGTTATTTTTGCCTT	ref_2754_RC	43	32	52	41	33	52	46	46	35	33
TCTTGCCCAGAGTCAA	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
CTAGCTGCTTCGTCTT	ref_2754_RC	12	32	14	20	24	13	28	16	17	14
CTGAGCATGATTTTGG	ref_2754_RC	95	130	102	111	117	91	124	88	125	99
CCGGCTATTCTTATCA	ref_2754_RC	22	44	41	33	45	31	54	23	57	21
GACCAGATCCTATATG	ref_2754_RC	36	54	44	32	41	27	42	27	44	26
TCTCTGGTCACGGCAG	ref_2754_RC	37	22	33	28	41	32	28	47	34	34
TATGTTAAGCCAGAAT	ref_2754_RC	32	33	40	31	35	22	34	28	32	16
GGCGCTGTTTCCTACA	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTGTTCTCCACG	ref_2754_RC	12	16	13	18	14	7	15	14	10	16
CATCCGTACTCAAGTC	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
ATAGGGCAGTGGTTGG	ref_2754_RC	18	12	19	10	18	15	18	16	17	9
CACCACGTTAGTTCCG	ref_2754_RC	73	74	81	70	63	81	79	49	65	61
CGGTATGGTACTTTGC	ref_2754_RC	7	31	1	4	21	3	26	7	26	0
GACCGGTCACGGGTCA	ref_2754_RC	9	15	16	8	10	11	19	17	16	8
TTCTATCGTAGTTAAT	ref_2754_RC	6	7	5	7	8	7	7	2	4	1
CTTTAATTATTGAAGA	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
TCCTTTTAAGGGTCGT	ref_2754_RC	18	40	35	31	37	24	44	34	30	18
TTCGAGTACGAAAGAT	ref_2754_RC	45	41	55	41	48	42	48	44	68	34
GGACTGAGCACTATTG	ref_2754_RC	12	14	17	17	20	12	12	12	18	19
AGCAACTGGGTAGGTG	ref_2754_RC	88	114	96	110	99	92	104	86	94	82
GACGTATTACAGGGGC	ref_2754_RC	1	6	10	3	8	6	3	6	5	6
TGTCCAGCGTGGCGAA	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
CGAATGAAACCAACGT	ref_2754_RC	14	13	19	13	10	12	24	13	15	9
GGAAACCTCTTTTTTT	ref_2754_RC	40	36	46	42	31	36	37	27	30	27
TTGCTTGTACAATCTG	ref_2754_RC	165	198	220	159	200	140	193	151	214	147
CCCAGTGTCGTAGCCA	ref_2754_RC	14	13	9	7	20	9	17	9	10	6
TCGAGTCCTGAGACAT	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
CACACCTGGCTCACCG	ref_2754_RC	12	11	5	13	16	12	1	5	12	7
CTTATTCTCTGACGAG	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
ACGAGGTCGTTAGGGT	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
GGTCATTTATCTCTTC	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
TATCTATGAGATAATG	ref_2754_RC	9	5	12	10	8	9	9	7	6	1
AGTTACTGTTTCAGGC	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
ATTATCTCATTGCCGA	ref_2754_RC	5	5	1	2	1	2	2	4	0	4
ATTTTTCAAGCCGTGC	ref_2754_RC	50	62	69	54	46	53	64	49	59	54
CTTGTCTGTCGCCTTG	ref_2754_RC	11	16	5	9	6	7	12	7	5	7
GAATGTTTCTGAAGGG	ref_2754_RC	3	9	4	7	9	8	9	9	12	13
TGATCAAGGGGTAAGA	ref_2754_RC	3	7	11	8	8	8	4	3	5	6
ACTGGCGACCTTTCGC	ref_2754_RC	18	21	26	25	23	21	33	22	22	20
TTCTTTGTACGGTCAG	ref_2754_RC	1	1	4	8	2	3	1	2	1	3
GAATCGTCTCCCTGGC	ref_2754_RC	0	0	0	0	0	0	0	0	0	0
CGCTAAAATTTGGCGC	ref_2754_RC	58	82	69	90	106	60	89	65	84	60
GGTTACCGGATTTCTG	ref_2754_RC	27	53	30	33	31	23	30	24	32	28
GTCGGTGAGAGTTAGG	alt_3968_RC	15	29	21	25	39	30	39	27	39	14
AATTCGATTCACCTGA	alt_3968_RC	8	19	15	8	15	10	24	12	20	4
ACTCGCAAGGCTGTTG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CGCGACGTTAAAATCT	alt_3968_RC	10	14	11	8	25	6	22	11	14	15
ATCGGGTTGGCTACCT	alt_3968_RC	12	41	15	13	45	14	40	22	42	11
TTCCAGGTCTAGTTTT	alt_3968_RC	26	58	28	14	62	21	57	15	50	21
CTGCGTATACGGGATC	alt_3968_RC	14	39	24	21	37	28	33	21	35	14
TCAGTTTGTACTCTGG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TTCTGCGGTTCCCCTG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TATGATGACTAAGGGC	alt_3968_RC	24	47	35	44	62	30	54	24	64	29
AGTTTCAGTACTCTAG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CGTCTGGGCGGTAGCA	alt_3968_RC	16	141	37	24	153	24	131	28	154	17
CATCTTGAGGTTATGC	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CCAGCCTTTACCCGCA	alt_3968_RC	1	30	3	5	20	4	27	5	29	5
ATTGTAGCCGCGTTAG	alt_3968_RC	23	54	27	32	60	27	67	24	70	11
GTGCAGGTACGACTAT	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
GACACTATTGGACATT	alt_3968_RC	21	35	13	14	37	17	27	22	31	17
CTCTCCCTGAGGCTTG	alt_3968_RC	23	35	17	15	33	12	35	16	33	17
TCGTTATTGCTGGGAT	alt_3968_RC	1	2	1	0	2	3	2	5	6	1
TATAGCAATTCATGTA	alt_3968_RC	3	24	10	6	16	7	8	3	18	11
CTGGCTTTTACCGACG	alt_3968_RC	14	42	15	18	50	13	36	10	44	10
CGGCGCCACCTCGATA	alt_3968_RC	2	13	5	6	13	8	16	4	25	4
GTCGTGCGTGCGGACA	alt_3968_RC	17	46	18	17	29	10	22	14	39	13
TTCCTACTATCTCACA	alt_3968_RC	24	47	18	20	28	16	19	9	46	16
GGCCTGATGGAAACGA	alt_3968_RC	1	0	0	0	0	1	1	2	1	0
GTTCTCCTGCCGAGGT	alt_3968_RC	27	58	31	28	66	28	62	27	58	26
ACTTGGAGGTTGTTGT	alt_3968_RC	22	45	27	19	37	21	54	19	33	21
ATGACTTAGCCGAACG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CATGAGGCCCCCTTAC	alt_3968_RC	11	6	12	8	10	11	27	13	7	8
ACCCTATCTAACAACC	alt_3968_RC	10	45	33	22	44	15	37	12	40	18
TAGGTAGAAGGCCCCA	alt_3968_RC	1	1	1	0	3	1	1	0	1	3
GTAGTTATCGTAGACG	alt_3968_RC	9	18	5	9	14	4	10	0	13	6
TAGCCAGTCTCCACTT	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TTTGTTGCCCAAAACG	alt_3968_RC	32	72	51	40	82	36	69	34	108	33
GTTTCGTAAATAAATC	alt_3968_RC	27	69	54	42	88	33	60	39	69	22
CCGTTCCGGTTAACAA	alt_3968_RC	13	21	11	10	27	10	20	6	22	9
CCTTTGCAGTAGGAAC	alt_3968_RC	8	22	5	10	16	10	31	3	18	4
AGGCTAGGGGAACACG	alt_3968_RC	4	23	9	17	14	9	26	6	17	5
CCATCTGCTATGCGTG	alt_3968_RC	32	113	38	22	141	32	108	21	124	27
GGATCTCTTACGCACT	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
GTGGATTTCCTTTGGT	alt_3968_RC	17	36	20	11	25	10	21	12	31	11
GGACGACGGAGGTCTC	alt_3968_RC	9	12	10	12	10	11	24	3	24	8
GTAGTGCATGGCGCCT	alt_3968_RC	15	28	14	17	22	15	27	11	30	8
AGGCTAAATATAATGC	alt_3968_RC	0	0	0	2	1	0	2	1	4	2
GGACAGGTGACACCAC	alt_3968_RC	54	110	62	56	122	61	141	60	112	49
GATTTTGACACCACCA	alt_3968_RC	257	443	254	220	430	209	489	194	505	159
AGTAGAGCGGTAAACA	alt_3968_RC	15	31	19	17	33	12	43	12	28	6
GAACCAATTATTTACG	alt_3968_RC	22	32	23	13	30	15	32	12	36	12
TTTTTATAACAAGCTA	alt_3968_RC	87	143	110	71	192	87	186	87	188	78
CTTACGTTCCCCACCG	alt_3968_RC	28	100	35	26	103	34	99	35	125	23
TATCATAAGCTATTTT	alt_3968_RC	6	6	3	3	12	2	10	3	15	2
TTACTTGCGCTTGTGT	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTTTGTATGATA	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TTCATCGAACGCGCTA	alt_3968_RC	44	74	46	28	75	34	53	32	74	22
TTCGTCAAGAAGCCTC	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CCAGCTCTCGTCGCTT	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CGCTTGCGAGCTGACA	alt_3968_RC	18	86	38	21	78	22	85	11	93	24
ATCGGTCAGGTTGCAC	alt_3968_RC	3	7	3	1	15	3	17	1	13	2
GCCTCTGCGTTATGCA	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TAGGCTCTGGGCAACC	alt_3968_RC	22	61	30	37	54	33	73	37	73	33
GACCCGTCGTTAGGAC	alt_3968_RC	23	57	28	20	64	22	76	17	77	21
TCGTAATTGATTAACG	alt_3968_RC	46	101	56	53	84	66	89	45	152	41
ACTTGTTCGATCGCGC	alt_3968_RC	14	15	9	13	26	6	21	10	13	9
CTGGGTACTTTTTCTT	alt_3968_RC	2	0	1	0	1	0	0	0	2	0
TTGCAGGCATCTCCCT	alt_3968_RC	15	37	20	19	41	21	24	23	42	10
TACGTGGGCCTCCCTG	alt_3968_RC	30	78	32	35	90	29	94	36	84	28
AATGGTGACTTTAATC	alt_3968_RC	21	40	17	21	37	16	32	16	35	17
TTTAGTTCTTTGGTAG	alt_3968_RC	24	45	34	22	37	24	57	19	57	12
TCACTGTCGTACGCGC	alt_3968_RC	27	50	24	23	59	27	42	20	60	27
GGTGTCTGTTGACGTC	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TAAGTTAACTTATGGG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTACTCTGATAT	alt_3968_RC	8	13	3	5	23	10	9	3	18	3
TTTGGCCTTTTCAGTG	alt_3968_RC	10	53	20	8	33	17	55	15	48	14
GTCTTCGCCCCCTAAT	alt_3968_RC	32	88	48	53	97	29	88	33	93	37
CCCTCACAGGAATTAA	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CAAAATTCTTCCGCCT	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CGGTCTCATCTTGCAA	alt_3968_RC	0	2	0	0	6	0	5	0	3	0
GAGATACGTGGTCTAG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TTTACGTCCTTTGGGA	alt_3968_RC	29	36	38	20	51	22	44	18	48	21
TAATCGGGGTATATAC	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
GGTTTACGTAAGCGTG	alt_3968_RC	0	1	0	0	5	1	2	0	0	0
CGATGAGTCGTCGTGA	alt_3968_RC	11	25	18	11	15	10	23	13	29	12
GTATTTGGCGATTTGT	alt_3968_RC	20	42	19	11	23	11	32	15	28	20
GACTATACGATTAGTC	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
GTTCGGCAGGTATATT	alt_3968_RC	6	7	8	8	17	4	16	8	16	11
GCTGGCAGTTCTTCAA	alt_3968_RC	15	40	23	17	29	17	36	15	32	16
CTGGCTTCGTCACCTC	alt_3968_RC	36	69	34	32	86	32	63	22	63	28
AAGACAATAGCTTTGA	alt_3968_RC	31	57	48	13	68	25	47	21	62	13
CTGCGTCTCTAGCACT	alt_3968_RC	70	152	87	72	152	44	151	42	156	44
AGCGGCTGAAATAATC	alt_3968_RC	22	54	35	20	38	26	49	29	43	24
CTGGCGACTTACGATG	alt_3968_RC	6	24	4	3	19	1	16	3	21	7
TCCAGCTTAATCTATT	alt_3968_RC	31	82	32	29	75	33	106	39	94	40
TCCCTACCGTAGATGC	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
GTTATGATACATACGC	alt_3968_RC	3	7	5	3	9	6	8	4	6	5
TACTTAATCATCTTCA	alt_3968_RC	43	75	46	55	91	56	99	22	109	29
CAATATGCTATATATC	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CCAACAGCCTCTACGT	alt_3968_RC	18	55	31	18	68	15	49	28	54	8
ACGCTACAGGCGAACG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
AAATCTATTGCTAGTG	alt_3968_RC	11	22	16	10	22	11	34	17	26	7
TGTTTTGGTCACTTGT	alt_3968_RC	11	23	16	10	16	9	27	3	37	13
TCCGCAACATTTGGCC	alt_3968_RC	9	26	10	5	13	10	18	8	24	7
GCCTCGGCGCTGCTTA	alt_3968_RC	68	78	58	62	122	50	91	64	102	55
AGGGTAAGTTACAGGA	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CCAACTATCATAATGT	alt_3968_RC	18	47	22	14	36	8	42	11	44	18
CTTAGTATGTTGCTAG	alt_3968_RC	28	68	36	21	66	23	70	25	76	26
CTACCCGTCCAATCGA	alt_3968_RC	2	38	4	6	25	0	31	1	30	1
TCTTCGCGCTAGACCG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
GTACCCCGCTCGGGCG	alt_3968_RC	6	22	3	8	23	4	26	2	26	3
CAGATTGTAGCGGTGC	alt_3968_RC	17	35	21	24	44	14	34	15	52	15
AGGTCGGGTAGCACTC	alt_3968_RC	15	32	21	21	23	16	28	11	27	10
ACCCTGCGACGTGCCG	alt_3968_RC	7	48	4	4	53	3	48	6	54	6
GCTAACCAAATGTCCA	alt_3968_RC	21	58	28	23	45	31	54	10	58	24
TGCGAAGTTTTTGTAC	alt_3968_RC	9	24	6	1	21	3	33	6	22	2
GCAGTTGTGACATGCG	alt_3968_RC	47	109	64	52	111	45	99	48	110	47
GCTCGGGTGAGGTCTA	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
CTCCATGTGGCGGTTT	alt_3968_RC	14	21	15	13	26	14	25	14	25	13
TATCCATCTTCGGCTC	alt_3968_RC	14	32	28	20	32	14	41	13	32	21
GCCTTCTACGTGTATA	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TCTGTTACTAATGTCG	alt_3968_RC	0	0	0	0	0	0	0	0	0	0
TTTTATTACGATACTT	alt_3968_RC	13	42	24	14	33	12	49	17	41	18
AATGGCGCAAGTCCAG	alt_3968_RC	3	6	5	4	4	0	10	1	4	6
CGTGACCAATATTAAG	alt_3968_RC	9	22	5	7	15	4	20	5	12	6
ATCCGAGTACATGCCT	alt_3968_RC	4	13	5	7	9	3	6	6	16	5
GCATTCGGCGTCGTGG	alt_3665_RC	2	0	0	1	0	2	7	4	0	1
GGGAGAGCATAAAATT	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
CTCCTGGGTCACATCT	alt_3665_RC	33	38	35	21	52	19	51	24	45	18
GTGTTGTACCTCTTAC	alt_3665_RC	11	8	6	4	5	4	14	1	9	2
CGGTCGAGGTTCTTGC	alt_3665_RC	25	55	37	20	60	30	43	21	51	22
CAACGAGGTGGTATGA	alt_3665_RC	9	37	15	23	18	15	22	10	48	20
CTCCCCCCGCTTTCGG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
ATTGGAACTGGCTTTT	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
CATGTTCGTCCTATTG	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
GAACGGTTTAGTGGCC	alt_3665_RC	31	44	34	38	49	25	56	25	43	21
GAGCTCTTCCACGGTG	alt_3665_RC	33	33	23	28	44	21	29	29	44	26
CTAGAATATCTCGCTG	alt_3665_RC	51	88	55	44	63	46	77	37	88	43
CTGTAGTATTTCTTGG	alt_3665_RC	13	29	19	20	26	10	30	12	26	17
GGATCGTGTTTTGGCC	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
TTGGCGCGTTTCTGTT	alt_3665_RC	27	41	37	36	52	24	37	22	57	25
TTTATGCTTAATCCCT	ref_3665_RC	5	29	17	13	23	6	23	5	20	15
TTAATCGTCAAATTTC	alt_3665_RC	3	8	2	3	6	3	9	5	1	3
TTCCCACTAGGAGGAT	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
ATTTCACCCGCGGCTT	alt_3665_RC	6	16	4	3	22	16	14	10	18	10
GCAGGTAACTTTTCTA	alt_3665_RC	43	53	43	30	47	31	63	30	53	28
CCGTCGATGTCTGCGC	alt_3665_RC	6	43	8	14	26	7	38	6	35	9
GATCCTTAGTCGCTCT	alt_3665_RC	7	16	12	10	27	8	18	8	22	10
ATGCTTCTTAGCCGAT	alt_3665_RC	61	87	72	66	88	70	69	49	94	50
TAGGTATGCTGCTTCT	alt_3665_RC	145	211	179	132	220	139	221	141	246	152
TTGGCGTCCCCCGTCA	alt_3665_RC	1	1	4	2	4	1	4	2	2	1
GTTGGGGTGCTTTGCA	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
TTGTCTCTTGTTATTC	alt_3665_RC	15	28	30	30	31	23	35	24	19	18
GTGATTGCATGAGTAA	alt_3665_RC	16	15	13	14	25	13	23	14	20	15
AATCTCCACATATTGC	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
AGCCTACTCATACCGT	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
TCTGGTTCCAACGTCT	alt_3665_RC	0	5	5	3	6	4	6	2	4	3
TACGTTTGCTGCACTG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GTGACATTAAGTATAT	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GGCGTGAGCGTCTGGT	alt_3665_RC	30	36	36	34	41	25	43	24	38	19
TGGACCGGCCCTTGTT	alt_3665_RC	34	53	23	19	62	17	51	25	47	16
GTACTGGCGGAATCAC	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
GACATCACGTGAGGCT	alt_3665_RC	21	24	30	26	29	18	31	22	47	24
TTGAAGATCCCTACGC	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GGCCGAACGAGCCCAT	alt_3665_RC	39	59	58	58	64	42	67	51	86	44
TTAGTTAAGATAAGGC	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
TGCTTCGCTTATTATG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GCTGCGAGGTATGGCT	alt_3665_RC	68	109	81	68	106	89	106	63	113	66
ACCACCAGCCCGCGTG	alt_3665_RC	49	85	57	44	65	57	86	36	88	42
GAACTGCCTAGAGCAG	ref_3665_RC	80	91	90	70	133	77	139	57	129	63
AATGTGCGGAGGTCAT	alt_3665_RC	2	4	2	3	10	2	5	2	3	2
AGGAATTGTGGGCCAG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GCTTCTATGTGGTTGT	alt_3665_RC	37	84	67	44	95	39	97	34	77	30
CTACGGTGTTTTAGAG	alt_3665_RC	14	25	14	20	19	12	35	17	40	8
TTAGATTGCATTGGAA	alt_3665_RC	7	26	11	6	19	9	24	18	27	12
GGCGCTAAGTCCTGGT	alt_3665_RC	1	7	3	4	14	2	8	10	10	9
TCCTATATGCACTCTG	alt_3665_RC	13	22	14	6	31	10	15	14	22	9
TCTAACTCAAGTTCTG	alt_3665_RC	38	57	30	28	73	36	55	42	70	33
ACTTAAGGCCTCTACG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
TTGGCTTCCATTCAGC	alt_3665_RC	59	80	56	45	97	57	101	60	90	34
CATATCATTCGCATTT	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
CAAGCGTACTACTTAC	alt_3665_RC	33	76	30	20	49	17	93	26	70	17
GCGTAATTCCCTTTGG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
ACCGGTGCTCGGCCCC	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GGGTTTCATTTGTAGT	alt_3665_RC	35	45	30	26	57	26	59	16	53	24
ACCTCATGGTCTTCGT	alt_3665_RC	7	13	16	11	10	6	16	5	11	6
AAAGTACGTACTCGCC	alt_3665_RC	5	20	12	9	22	6	28	7	14	2
AGTTGTTTTACCACTT	alt_3665_RC	44	79	37	39	70	35	95	47	90	20
GTATGACTATCTGGTC	alt_3665_RC	7	0	5	1	8	1	3	0	3	0
TATGCCAACAGTATAT	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GTGCGGCCCATCCATA	alt_3665_RC	5	5	6	9	6	0	12	4	11	5
TCGAGCTAATTAGGCT	alt_3665_RC	82	131	107	76	158	60	155	85	170	74
AGATTGGCGATGATTC	ref_3665_RC	15	26	19	14	24	14	36	16	29	14
AGGTATCATATTAAAG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
TAACAATTCCAAGTTC	alt_3665_RC	41	89	65	64	87	58	111	46	106	41
TTTCGTGCCTACAGGG	alt_3665_RC	0	0	0	0	0	0	0	0	0	0
GAACTCCGTATCCATG	alt_3665_RC	21	49	45	40	73	33	62	35	56	35
GTGTAGAGATTGATAC	ref_2169_RC	174	261	228	202	251	176	253	161	267	151
TCACATTCTCAATCAT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CTTATAGTGTCGTTAT	ref_2169_RC	22	36	21	26	37	30	38	31	46	19
TATGACTACGGCGCCC	ref_2169_RC	60	58	94	74	64	56	64	51	78	59
CGGTACATGTTAAAAT	ref_2169_RC	11	10	19	9	12	19	9	10	11	15
AGGCATTACCCTTATT	ref_2169_RC	11	15	17	4	13	3	12	7	3	13
TATTAAGGAACCCGGT	ref_2169_RC	17	29	28	22	28	22	20	14	30	18
CACTCTCGATTGTGTG	ref_2169_RC	44	82	59	33	86	24	91	32	111	36
ACGATAAGGTCGCTTA	ref_2169_RC	14	17	27	24	25	25	25	22	26	18
GGTTTTCCGGGTGAGT	ref_2169_RC	145	151	179	150	164	125	191	142	145	140
CTACCTGATCCGTCCA	ref_2169_RC	32	76	45	46	83	37	75	60	84	29
CGTTTAAGCTCTGTGA	ref_2169_RC	19	57	24	14	52	12	39	14	51	12
CTGTCCGTTATGTGGA	ref_2169_RC	30	39	32	30	52	30	50	23	40	32
CCAGACTATCAACTGA	ref_2169_RC	5	22	7	4	41	1	32	5	29	5
GATTAGCAGTAAGGCA	ref_2169_RC	6	1	2	5	3	6	1	2	3	2
CAGTCGATCCCTTTTT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CAGTTGTTTTATCACT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CTGGGAGCATTCGTCT	ref_2169_RC	11	16	10	14	14	7	19	6	8	7
CGCTGAATGGTTAGCT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CACTACAGGCAAATTC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
AAGTCCTTTGTGCCTG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
AGATACACCCGTTTCT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
AACCGTGTATGTATAA	ref_2169_RC	11	11	4	7	12	7	7	10	7	7
GAGAGCGGTACAGGCT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TCGATCCGGCTTGACA	ref_2169_RC	128	138	112	88	114	94	115	110	138	87
CAACACTTGTGAGTAA	ref_2169_RC	27	35	30	34	35	31	37	35	22	26
GAATAGGAGTTCTGTT	ref_2169_RC	137	148	151	119	154	128	128	121	148	116
TGGTCACATACCCGGT	ref_2169_RC	14	19	20	16	22	10	11	4	2	10
ACTCAATTTCATTTTA	ref_2169_RC	26	39	20	21	34	29	40	20	29	22
ATAGCTGAGTTACCTG	ref_2169_RC	31	56	35	27	60	24	64	31	60	25
AGTCCTCGTGCTACCC	ref_2169_RC	21	27	22	20	29	27	32	21	55	23
TTGTTTCGGCCGTGGA	ref_2169_RC	1	2	2	1	5	2	4	1	4	2
GAGTGTCCGTGACCGA	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TTACCCTTTCCAGAGC	ref_2169_RC	23	39	26	31	48	20	36	15	35	24
CCCCAGCTCCAGACCG	ref_2169_RC	78	76	78	68	86	68	82	71	92	50
GAGGATCTTTAAACTC	ref_2169_RC	1	2	4	5	2	10	5	4	8	3
GATAAGAGTTTCGCAC	ref_2169_RC	141	204	175	153	177	160	191	152	179	127
TCATCACCGGTGTCAT	ref_2169_RC	97	115	118	115	111	75	145	86	151	85
GTTTCTGCGCACTGGT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CCGTGGGCCCTTTCAT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TTCTTGAGCTAGCCCA	ref_2169_RC	53	61	51	48	73	49	60	44	51	46
TACAACTCTTTGCATG	ref_2169_RC	17	40	11	25	48	17	30	15	37	12
CGGCGCAACTAGCGAA	ref_2169_RC	14	44	20	24	37	11	31	15	38	8
TTGTAAGCCAGTCTCT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TTTGGAATGGAGCTGT	ref_2169_RC	9	16	14	6	14	14	8	12	16	12
TTCTCTGCTCGTCTTT	ref_2169_RC	38	42	31	22	31	31	27	18	45	26
TCTTGGCCATTTATCG	ref_2169_RC	32	28	43	23	33	31	35	30	27	41
CTGAGATGTGAGACGG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CGTTCCTGCGCCCGTT	ref_2169_RC	10	20	13	16	10	7	18	11	12	5
CATAGTCTGCTCAGTC	ref_2169_RC	30	43	35	32	43	28	50	31	57	22
GTGGTCTCCCCATATA	ref_2169_RC	2	9	1	3	14	2	9	1	8	3
CGCTGATACTCACGAG	ref_2169_RC	105	142	106	107	124	87	133	94	126	76
GGCTGTTTGGCTCCGC	ref_2169_RC	8	12	13	8	5	7	8	12	10	7
TCTAGCGCGGTTCTTG	ref_2169_RC	31	46	50	23	39	32	39	35	44	18
GATCGAGATTCCATTC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CTCGATGTGAGGGGAT	ref_2169_RC	32	24	30	26	12	17	22	29	15	24
ATACACACCAGGTTAT	ref_2169_RC	47	87	80	54	77	50	77	48	72	69
ATGGCGGTCGGGTAGG	ref_2169_RC	36	24	30	16	27	16	22	24	18	17
CTTTAACATCCCGACT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GTTACGCGGCCTCTAT	ref_2169_RC	11	11	12	10	15	12	14	12	12	10
ATAAACCGGGCAGCGT	ref_2169_RC	13	14	19	8	16	11	22	9	16	14
ACACGTAGCGTAGTTC	ref_2169_RC	233	280	251	254	312	224	288	199	303	197
AGCGTGGCACACAGCG	ref_2169_RC	24	28	40	18	25	20	18	34	28	14
TGTGCATGAGCCCATT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GCAAGTTCTTCCGTCG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GTTTGACACACCAAGT	ref_2169_RC	30	52	40	39	48	47	57	42	69	30
TTAAGTTTAGTGTTTA	ref_2169_RC	2	8	4	1	5	5	6	1	10	3
GTTCTAGGGGGATATT	ref_2169_RC	22	14	13	15	20	13	24	12	18	6
TATGGATCATTAACGC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GTCTGGACTTGGGGCA	ref_2169_RC	18	32	16	23	32	12	40	35	35	19
TACCCCGGTGCAACAA	ref_2169_RC	21	97	35	35	100	27	78	19	66	34
TTGTCATAACTTAGGA	ref_2169_RC	24	22	25	14	20	12	31	8	17	17
ATGACTGCCTAATGCT	ref_2169_RC	12	16	10	5	11	11	13	12	18	5
TTCGTGTAGATTTGTT	ref_2169_RC	39	48	56	52	51	32	65	44	60	34
AGAATGTTTCTTGGTT	ref_2169_RC	11	14	14	10	8	8	15	5	8	7
GGAAAGTATTTTGTCA	ref_2169_RC	7	14	23	15	30	13	22	21	11	15
TTCGTTATACCAGTTT	ref_2169_RC	17	27	20	31	30	17	21	17	40	17
AACGCACCTACCGCTC	ref_2169_RC	5	17	15	6	9	6	11	3	11	3
TCAGCGCTCGGTTCAT	ref_2169_RC	2	16	0	5	8	6	17	2	13	5
GAGTAGCCACCTTCGT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CAATCAGCTGATATAT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CGTGGATTGGTAAAGT	ref_2169_RC	1	5	0	0	1	2	2	3	1	2
GGTAACTGGTCTCGAT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CGCACTGCACTTCAAG	ref_2169_RC	19	44	30	23	22	25	32	18	29	23
TGAGGAGAACTGGTGT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TCCCAGGTCTGCGCTT	ref_2169_RC	15	16	12	9	13	9	13	12	15	12
CGGTTCCTTTAGTTAA	ref_2169_RC	1	1	1	1	4	0	1	3	4	2
TTGTCAGGACAGCCGC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CCTTTTGTGTGTGTTA	ref_2169_RC	1	2	4	2	6	3	4	3	4	5
TCCAATCAACACTGGG	ref_2169_RC	9	11	9	7	15	7	8	10	9	8
AGGAGATTTACCGTTT	ref_2169_RC	75	99	92	79	91	69	99	61	99	79
TCTCCTTCCGTCTTTG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TCCTTGGCAATTCCCT	ref_2169_RC	9	10	11	4	7	12	14	6	14	11
CAGTTCCATGATAATT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
AAATCATTTTCGGACT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TTTATGTGATCCCTGC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GTTATAATAATTTTCG	ref_2169_RC	7	11	10	6	12	4	10	5	5	5
TCATGTACCACCTAGC	ref_2169_RC	85	80	92	71	73	76	112	61	112	60
AAACGAAGTTCTGATG	ref_2169_RC	11	6	8	6	17	8	7	5	11	10
TGACTTGATCCTAAGC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TGTTTGATCCCTCAAG	ref_2169_RC	53	50	49	58	68	46	67	39	68	45
GGACGCTGTTAACGCG	ref_2169_RC	24	41	30	27	36	19	56	28	37	36
GGTCTTCAATTTTTGC	ref_2169_RC	11	15	16	10	15	10	26	15	22	14
TATTAAGATTGTCTAC	ref_2169_RC	77	91	101	85	108	83	114	83	123	64
TAACGTGCTAGGCCGA	ref_2169_RC	19	23	40	29	43	26	23	25	31	18
TAAAGATACAAATCTT	ref_2169_RC	35	29	44	41	27	25	32	25	43	27
TGGGCACTCAGTTGTT	ref_2169_RC	32	45	42	40	41	48	57	51	65	27
CATGCACGTCTGCTGT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
TCTAGGGCGAACCCTA	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CAACCTTGGCAATGTT	ref_2169_RC	27	29	37	20	45	21	30	27	36	23
CGGCTCACAGCGAATG	ref_2169_RC	29	27	35	25	38	22	25	30	27	25
CCCCGGATCTTTCGTG	ref_2169_RC	59	92	62	42	83	56	83	49	94	57
CGGCTAGTTCCGGGTT	ref_2169_RC	20	21	20	22	24	23	17	19	39	29
CTATAGGCTCGGATAA	ref_2169_RC	32	39	43	43	29	28	28	31	37	34
CTGACCGGTTTGTTTG	ref_2169_RC	12	12	10	16	12	9	10	9	27	8
TGAATACCTTGTATTC	ref_2169_RC	28	36	28	36	32	25	38	23	32	34
TCAACTTACGGCTCAG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GGTGTCAATGGGCTTT	ref_2169_RC	10	12	9	4	9	9	14	14	5	7
CGGGTATTAGTAGCAT	ref_2169_RC	47	74	51	66	55	44	59	38	67	49
CTGATGGGCCTTCCTA	ref_2169_RC	25	40	32	20	51	27	46	30	36	29
TCCAAATAGCTTCCAG	ref_2169_RC	11	14	8	6	11	3	7	8	14	6
GTTGGGCCTTAGATAT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GGTGAACGCTGTATAG	ref_2169_RC	11	10	20	19	16	16	9	16	19	16
ATGTCTCGTGGAGATT	ref_2169_RC	15	8	13	14	16	10	22	10	22	8
CTAATTTCTAAATCCG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GTATCGACGAAGGTTG	ref_2169_RC	54	67	61	43	43	41	49	48	69	50
TCCGCTATATGGCAAG	ref_2169_RC	12	16	16	10	11	17	10	17	11	12
CTCTTTTCGATTCTTC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GGGCGGGTTATCTACA	ref_2169_RC	10	12	11	9	7	3	6	5	6	8
TACTGAGTTGCCTTTG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
ACTCGATTATAACTAA	ref_2169_RC	36	38	35	32	52	40	46	24	43	27
TTTTTCCACGCCGCGG	ref_2169_RC	7	7	4	10	4	5	12	9	10	13
GGGGCCATTCGGAATT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
GTTTTTGCGACCATAA	ref_2169_RC	14	26	22	21	27	18	14	17	17	11
TCCTCCTATGGGAATC	ref_2169_RC	42	89	60	44	87	44	63	55	90	49
AGAAGTATCTATCGAT	ref_2169_RC	2	3	5	7	4	4	2	6	3	3
TCAATCGCTTATCCAG	ref_2169_RC	20	18	23	21	17	11	18	18	17	22
TTTGAACTAACATTAT	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
CAAAGTCGAGTGATAC	ref_2169_RC	17	23	30	18	31	16	34	20	26	18
GCCTTTGCAGTAAGCT	ref_2169_RC	0	0	0	1	2	0	0	0	0	1
AGCGCATATTTGTTAA	ref_2169_RC	19	26	16	13	27	13	19	17	25	9
GTGGCTTGTCGACGGC	ref_2169_RC	44	32	43	35	53	40	46	34	52	42
ACATTTATTCCCATCC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
AAATAGCTCTATGCTG	ref_2169_RC	16	13	9	14	8	7	16	13	16	7
TCCTGTGTAACCTGTT	ref_2169_RC	9	18	17	21	17	10	15	17	16	11
ATCCTTGGGGAGCTTC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
AGGGTAACTTGTCTTA	ref_2169_RC	17	23	20	7	18	21	16	10	10	6
TCTAGGTCCGGCAGTC	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
ATATTGGTTATCACCG	ref_2169_RC	0	0	0	0	0	0	0	0	0	0
AAGAGTTTCGTCATGT	ref_2169_RC	9	7	6	2	6	4	7	2	6	5
CTGCAGCGCGGCTTGC	ref_2169_RC	7	6	5	11	9	5	10	10	8	4
GAGCGCGCATGTCTTG	ref_2169_RC	28	26	33	24	39	19	45	37	45	19
TGGTGATGCTCTCTTT	ref_2169_RC	34	30	31	30	32	24	49	32	41	24
GTAGGGTCGGTACTCA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
TGCGATGACTATGCCA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ACTATGGCTGTTCAAT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GACAGTTTCCCTGAGC	alt_3388_upstream	25	16	24	21	21	18	25	23	24	16
CCTCCCTGCCATTACT	alt_3388_upstream	16	18	19	6	11	12	20	7	21	18
CAACTATTAGAGTTCG	alt_3388_upstream	4	9	7	11	7	5	12	6	12	8
TATTAGATTGTCTATG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCACGCGCCACA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
AAATGGCGACCGTTGG	alt_3388_upstream	0	1	1	2	3	0	0	1	0	1
CCTATTCCTGATGTCC	alt_3388_upstream	37	36	62	40	58	35	47	36	64	23
CTCGGCAGAATGTGGC	alt_3388_upstream	27	25	42	40	13	31	32	22	27	29
ACTCCCGCTTTTCGCC	alt_3388_upstream	0	23	1	1	26	1	13	1	20	0
AATTTGCGTCTGAGCA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CATCTCTGCGGTATCA	alt_3388_upstream	80	129	119	81	131	95	147	94	112	79
ATACGGTTTCATGCAG	alt_3388_upstream	0	0	0	0	1	0	1	2	0	0
GACCTCCGACCCATAC	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
AAAATCGGAACCAAGC	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGAAGATTAGCGT	alt_3388_upstream	8	8	8	5	7	13	10	12	16	12
GTGCCCCTAGGATCTA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GACTTGGCGTACTTAT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGATCGAGAACAA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GTATTATTTTTGCCTT	alt_3388_upstream	20	17	12	11	17	16	22	11	16	12
ACCTGGGTGTTACTAC	alt_3388_upstream	13	4	9	5	10	8	11	6	16	7
TATACCTGGTAAAAAC	alt_3388_upstream	41	24	24	24	21	33	30	24	22	21
GTCATGCTTCCTCGCA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGATGAGCTAGAA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CACCAGACATATGTGC	alt_3388_upstream	8	17	11	7	20	5	18	3	25	4
GTGTGCTTGGCGTCTT	alt_3388_upstream	17	26	16	21	33	11	28	12	17	22
TCATTATCAGTGCTGG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GCATAAGTTTAGTTCA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CAGCATGTGTAAAAAC	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ACGGAAGAGTCAGCAG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CATGTCTCGTATCAAT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
TGATGTTGTCGCTACC	alt_3388_upstream	9	13	17	12	28	11	16	12	10	16
ACCAAGGAAATCGATT	alt_3388_upstream	3	5	2	2	2	3	5	6	3	4
GACTGGCGTCCTGGTT	alt_3388_upstream	8	20	8	4	16	8	21	6	22	3
TCGGTCCGGTTCGTAA	alt_3388_upstream	14	16	10	16	17	10	20	5	23	12
TCTCTCTTCGTATCTG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
TGGCAGACCATCAGCT	alt_3388_upstream	6	9	15	6	16	16	22	12	11	10
TGGCGTTAGTGGGCTT	alt_3388_upstream	15	16	11	14	10	12	21	15	13	5
GTTGATTTACACGCCA	alt_3388_upstream	31	19	27	21	30	32	27	25	46	19
TGATCTATGATTGGTG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTATCACACGATA	alt_3388_upstream	1	5	8	6	5	10	9	4	10	3
CGGATTACGACATCCA	alt_3388_upstream	5	7	6	6	15	4	12	7	9	3
GTTGTCCCAAATTTTA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GCAAGTTACTGGCACT	alt_3388_upstream	34	56	37	31	44	39	56	49	49	37
TCGTGCGATTCGAGCC	alt_3388_upstream	16	14	15	11	26	25	23	24	30	18
AGTCATGGGGCCAGCA	alt_3388_upstream	37	45	50	44	58	42	49	44	63	37
TAGTAAGACCTTTTGT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CAGACTTTGTCGGGAA	alt_3388_upstream	22	31	36	39	39	17	27	38	24	32
CCAGTATATATTCCGG	alt_3388_upstream	38	54	42	38	98	26	88	30	79	21
GTTTTCTTCAGCGGTT	alt_3388_upstream	20	16	13	24	34	11	17	23	22	21
TTAGGTAGTTATCGCA	alt_3388_upstream	18	18	17	12	14	17	19	9	13	15
TCTAATAAGGTTCCGC	alt_3388_upstream	50	73	70	40	89	45	75	58	76	66
ACCGGGTTCTTGCATG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
TCAGAAAGCTCCTATC	alt_3388_upstream	24	25	46	43	20	23	28	22	33	20
TCAGATCGTGTACGGA	alt_3388_upstream	11	20	15	6	13	8	7	11	20	6
CCCACTTCCAACCTAG	alt_3388_upstream	73	108	62	65	106	45	95	49	115	43
TCGGGAGTCACGCTAA	alt_3388_upstream	34	38	42	32	42	23	33	40	38	27
CTGCCTTTCCAAATTG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTCATTTACCTTA	alt_3388_upstream	10	29	16	19	33	16	29	18	16	16
TCAAGCTCTAATATAT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTCACATGCGATA	alt_3388_upstream	10	16	11	9	25	8	23	9	24	11
GTCGTACTACGTAACT	alt_3388_upstream	47	58	60	56	81	38	71	55	82	43
CGCTGCAGTCGACGAA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CTCCAGCCGGCCTGGG	alt_3388_upstream	29	35	34	18	41	22	32	22	39	21
TTGCGTCACTGCTACA	alt_3388_upstream	31	36	48	30	53	35	54	37	45	33
ACTGCAACGCACTTTG	alt_3388_upstream	106	150	97	88	108	103	145	94	146	101
CGTCGTAAGATGTTCC	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTAGGCGTTCCGG	alt_3388_upstream	61	72	67	64	71	49	67	63	71	57
TCGCTTTTTGCTCCGT	alt_3388_upstream	60	60	69	66	67	43	53	45	64	46
TAGGAGTACTGTTCAC	alt_3388_upstream	14	22	28	19	25	22	29	19	23	19
GAATGACGGTGTTCCC	alt_3388_upstream	39	37	33	43	49	41	48	39	49	35
CGGGCGCGTTTAAAGA	alt_3388_upstream	61	62	58	53	61	44	39	34	61	67
ACTGTATTCCTACTCG	alt_3388_upstream	11	9	12	9	13	14	15	15	10	8
GCGCATCTGGTTGCTC	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CTTACGTTGTTCTCTG	alt_3388_upstream	19	21	23	23	18	29	27	32	33	24
CAATGGATAAGTCGCG	alt_3388_upstream	1	0	1	0	0	0	0	0	0	0
GCTAACAGAGGTCAAT	alt_3388_upstream	9	7	12	8	15	6	14	8	10	6
CCTTCTTTCCATTTCC	alt_3388_upstream	27	7	17	25	22	23	16	17	18	11
CCAGTCTATGTCTTTG	alt_3388_upstream	32	38	46	21	41	24	62	30	61	25
CCTGCCGGGTAACATG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
CCAAAACGCGACATTT	alt_3388_upstream	12	7	9	4	4	2	4	6	8	4
ATGCAATCGACTCGAT	alt_3388_upstream	1	0	0	1	0	0	1	0	0	0
CGAGTGGTATGTGGAC	alt_3388_upstream	26	15	24	29	26	25	24	14	24	17
TTCTCCTGCATTATAT	alt_3388_upstream	41	37	39	44	42	38	40	43	36	29
TATCACCCGGGACTTT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCGCCACGGAAG	alt_3388_upstream	15	24	11	11	12	9	22	17	28	16
CCTGTTAATCCGCCCA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
TAAAATGTGCAACAAC	alt_3388_upstream	74	121	102	96	137	74	116	78	112	65
ATGTATATTTTTTCGA	alt_3388_upstream	25	15	32	23	31	17	21	23	23	25
CAACTCAGTCATTAGG	alt_3388_upstream	111	116	100	104	147	93	112	91	139	70
CGGGACCTGATTTTCC	alt_3388_upstream	12	10	24	12	14	6	15	10	16	17
CTTTGTGACGAATACG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTGCTAGTTGCCC	alt_3388_upstream	36	29	32	41	40	26	39	26	40	21
AATTTACTTACCGGGC	alt_3388_upstream	6	66	12	12	89	7	88	10	68	8
ACACAGATTGCCGTGA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATAACCGATAAAGGCA	alt_3388_upstream	2	1	3	2	2	0	5	3	1	4
TATTGCAACCACAGTC	alt_3388_upstream	9	21	17	12	10	8	8	9	12	13
TGAGGTGAAGTCTCCG	alt_3388_upstream	14	17	19	14	22	11	10	15	12	18
TTAACGCACGTAATGT	alt_3388_upstream	3	2	10	3	2	7	2	6	1	4
CGTCGTGCAGGCTAAA	alt_3388_upstream	23	23	22	16	25	14	15	9	16	12
GAGCAGGTAATGCACC	alt_3388_upstream	10	15	3	4	9	4	16	6	5	6
TGCGGATTTCGGGACT	alt_3388_upstream	96	122	126	94	153	96	142	102	122	93
ACCAGATTACGCTAGA	alt_3388_upstream	46	52	56	34	68	41	60	35	79	41
GTCATGAGCGGTGGCC	alt_3388_upstream	23	31	27	24	26	17	37	23	32	23
ACCGAGAGACTTTGGT	alt_3388_upstream	25	20	15	10	21	13	17	12	15	12
ATATTGTGAGGTAGGA	alt_3388_upstream	11	16	15	18	16	11	16	13	15	8
TAACTTATTGTGAAGA	alt_3388_upstream	106	141	133	121	125	106	138	103	118	101
TCTGGTTATTGAGACT	alt_3388_upstream	4	7	7	6	9	11	7	5	6	3
TCTGCCACCTCAGCGA	alt_3388_upstream	32	48	68	45	39	40	41	36	45	38
TCTCGAGGTCAGGCTT	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
AATTTGGTTTCTAAAT	alt_3388_upstream	29	24	37	14	25	24	26	28	32	19
ATGGTGCAAGAGTCAA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTTCGTTTGTCTC	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTAATCTGATAT	alt_3388_upstream	1	6	4	3	2	5	4	3	1	6
AGGGTCTGGGGGCGGC	alt_3388_upstream	297	374	330	308	352	273	370	302	361	283
TTGGCAGCCCGCGGTA	alt_3388_upstream	34	32	34	28	24	21	39	28	43	25
ATCTTTGTGAACTAAA	alt_3388_upstream	35	35	56	39	56	46	53	42	55	30
TGTACACCGTTTTGAT	alt_3388_upstream	2	3	5	4	3	1	3	3	0	4
GTGGTAGTTTAGTTCT	alt_3388_upstream	95	132	145	108	158	111	125	86	142	98
GTTTAATATCTATTCA	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCATTGTTACCTG	alt_3388_upstream	29	43	34	42	58	28	58	20	50	21
CGTAAAGCTACGGCTC	alt_3388_upstream	12	20	11	18	12	16	22	19	12	8
CAATAGTTCAGTGTCT	alt_3388_upstream	3	5	0	0	12	0	1	4	3	2
CGGAAATTTAACGCGG	alt_3388_upstream	0	0	0	0	0	0	0	0	0	0
ATTGACGTGCTTATGC	ref_2027_fdr	188	211	278	208	257	200	243	236	252	190
ATTTGTAACGCTCGTT	ref_2027_fdr	43	30	44	37	33	45	29	34	31	35
TAGTGCTTCGTATAAG	ref_2027_fdr	0	0	0	1	0	1	0	0	0	0
GAGAAATTAGTAATAC	ref_2027_fdr	261	218	361	304	204	259	228	264	204	240
TACTTATTGCGGCAGT	ref_2027_fdr	39	29	25	31	31	16	17	37	26	31
CGGGCTAGCTCGCCGT	ref_2027_fdr	12	18	17	21	19	12	15	17	18	23
TCGTCTTACACGATTG	ref_2027_fdr	6	9	9	14	5	3	9	8	4	3
TATGAAGTGCTATCAG	alt_2027_fdr	120	124	166	123	104	111	130	90	97	101
TTAGGAGGCTTTTGGC	ref_2027_fdr	51	58	78	52	65	63	37	32	64	61
TCCAGACGTGCAGAAG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TCCGATTGCTCGTACG	ref_2027_fdr	20	19	32	20	24	17	26	15	24	18
GTATTACCGGTTGGAT	ref_2027_fdr	71	76	107	83	73	91	69	74	52	80
TCTAGTAAACGGCGCT	alt_2027_fdr	39	44	57	37	50	31	31	23	30	29
TGTATGATGCCCAAAA	ref_2027_fdr	6	3	2	10	5	11	3	5	0	5
CAGACTCACACGTACG	ref_2027_fdr	55	42	58	55	34	40	49	37	44	43
TCTCCAGACGTAGACG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTGACGCTTTAT	ref_2027_fdr	60	85	96	79	94	92	68	73	96	94
GTTGTCAATGCGGCTG	ref_2027_fdr	18	12	19	16	12	19	14	20	14	20
TGATACTTAAACACAG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GCATGACATTTCGCAC	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
CCACTTTTGCACCGCG	ref_2027_fdr	21	39	39	34	39	29	52	39	34	20
CTACGCTGGGGATCGG	ref_2027_fdr	71	77	75	95	70	97	80	76	63	83
ATGGTGAGCCAACAGA	ref_2027_fdr	19	11	15	18	12	17	15	21	11	13
TTATTGAGGTAATCCA	ref_2027_fdr	49	23	54	63	27	45	35	41	48	39
TCCCAAGGCCACAACG	ref_2027_fdr	112	103	174	117	98	108	100	83	115	86
CAAACGTGGTAATTAA	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCCAAATCGTCGC	ref_2027_fdr	62	43	86	65	44	49	58	62	43	47
TACTTTCCTATGTTGA	ref_2027_fdr	106	78	138	94	95	112	69	95	59	92
ATGCAATGTCCCTTAG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGGGAGTTTGGGT	ref_2027_fdr	106	80	132	115	88	93	93	103	81	75
CTCGTCGGTGTCGCAG	ref_2027_fdr	60	71	57	67	58	70	87	58	82	48
GACCCCCGTTAAATGA	ref_2027_fdr	48	55	69	46	60	38	33	51	57	42
GAGTCGCTCCGTCTCC	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
CATAGGTAAATTATAT	ref_2027_fdr	25	13	17	17	13	11	13	16	15	16
CGATGTGCTCAGTATG	ref_2027_fdr	59	44	56	44	51	43	50	54	29	44
TTCTTTCGACGGGCCT	ref_2027_fdr	213	155	217	168	135	199	154	168	138	144
CTTTGTGTCATCACGG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGTCATCACCTCT	ref_2027_fdr	17	13	20	25	18	15	25	24	24	14
TCTCAATCCGCGCCTT	ref_2027_fdr	82	66	112	75	43	75	54	90	53	83
GCTTCTCCGACCCTGG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TGACGGTCAACGTGGC	ref_2027_fdr	23	27	23	16	25	22	25	20	37	20
GCCCGCATGCTCCAGA	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCGTAGTCGATG	ref_2027_fdr	6	7	22	11	8	9	10	7	7	12
CAACTACGGTAAAATT	ref_2027_fdr	49	35	27	19	29	23	30	27	27	24
ATTTGCCAACTTTTTG	ref_2027_fdr	96	62	100	92	82	90	71	84	101	87
TGACAGAGACTGCGCA	ref_2027_fdr	74	69	83	70	62	65	64	73	81	97
TCTTCCCGGGACCCTC	ref_2027_fdr	91	76	118	112	101	99	95	77	58	69
GGGCGGGCCATTGAGT	ref_2027_fdr	165	129	211	150	156	129	166	148	148	150
CCTGACCCCAATTGAC	ref_2027_fdr	161	101	171	136	108	143	134	135	121	154
AATTCCTCCCCATGAA	ref_2027_fdr	25	32	25	37	43	28	32	16	29	21
CCAATGCATTTCCGCG	ref_2027_fdr	83	63	88	96	88	75	70	82	67	69
TGCCAAGGCTGCGGAA	ref_2027_fdr	4	4	4	1	0	5	2	4	0	2
CCTGGTATGCGTCGAA	ref_2027_fdr	9	6	13	3	3	8	9	2	1	5
TATTGGTACAATGACG	ref_2027_fdr	6	5	11	9	2	4	13	12	6	13
AGATTGAAACCTTTAG	ref_2027_fdr	13	13	10	6	16	11	22	11	22	13
GGTGCCCGCCCTAGTG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTAAATTTGAGTT	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GGTTATCAGATGATAT	alt_2027_fdr	45	58	60	53	58	53	55	63	56	49
CGCTAGGCACTTAATA	ref_2027_fdr	82	74	79	73	74	76	78	68	84	82
GGTCTACGTAGTACGG	ref_2027_fdr	12	7	11	9	9	2	15	9	7	12
CTTCTTCAGTTAAGGT	ref_2027_fdr	33	33	47	42	39	38	24	33	28	40
AATAATGCTTTTTTTA	ref_2027_fdr	123	71	163	136	83	133	91	120	93	124
TAACTGCGCATTTATC	ref_2027_fdr	15	20	22	22	11	20	5	14	16	13
CTTTTCGGGATATAGT	ref_2027_fdr	87	61	102	82	79	91	74	69	70	65
ACTCATGGGACGTCCC	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCGCGGGAGTTA	ref_2027_fdr	13	13	12	13	8	10	12	21	10	16
TGCGTGCCTCCGTAAC	ref_2027_fdr	44	38	61	46	42	44	43	50	42	39
CGTACTTCATTCCTAA	ref_2027_fdr	22	23	37	19	25	24	23	25	16	22
AACGTAAATGTGACAC	ref_2027_fdr	54	33	50	35	38	39	32	56	44	34
GTAATGCCCGTTCCTC	ref_2027_fdr	43	31	49	48	26	27	27	36	29	54
GCAGGACTTACTCTTA	ref_2027_fdr	40	23	47	28	24	44	34	27	29	31
CACGATTATTGCTCGG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
CAAACTAGCCCTTCTT	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGTCCAAATCAAA	ref_2027_fdr	31	28	33	34	33	43	33	38	34	30
TTTAGGATCATCTGGG	ref_2027_fdr	18	18	27	21	17	19	14	18	13	17
CAGCTCTTTCGGTGGG	ref_2027_fdr	16	29	25	22	20	15	14	21	16	17
GCTACGGAACTTTCAA	ref_2027_fdr	3	5	2	3	5	6	6	5	3	4
TCCTTGCTGCGACTTC	alt_2027_fdr	13	4	20	14	7	13	6	8	9	15
CGAAACGGTACGAGGC	ref_2027_fdr	73	73	105	99	77	87	88	97	84	80
AAAGATATGTGAAATG	ref_2027_fdr	241	202	309	228	206	253	236	222	225	242
TTGTCCACGTTTTGAG	ref_2027_fdr	44	30	37	47	35	25	38	28	40	32
CCGTTAAACGTTCGAC	ref_2027_fdr	30	31	28	38	30	30	25	35	30	33
GTGGGTCTAGAACAGT	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TGACGGACGCGGCGCG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGAAGCAATCCGA	ref_2027_fdr	8	4	15	18	7	13	7	11	16	12
GAGACAAGCGGGCCAA	ref_2027_fdr	166	135	191	179	134	165	134	144	145	151
CTCACCCCACACTACG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TACCATCATGCTCCCC	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCCCGTTAAATGA	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCCTACTCGACGT	ref_2027_fdr	36	37	43	38	34	42	35	42	35	48
CCGCAATGGGGGTAGG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TAGAAGGCAGTACTCT	ref_2027_fdr	194	163	251	179	137	205	203	198	211	211
CAAGCGCCTATGTATG	ref_2027_fdr	10	10	5	8	13	9	5	8	9	10
CGATCTATGCCTTGCA	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TATTCTTCATTGATGT	ref_2027_fdr	19	19	22	18	8	19	13	19	18	16
GCTTTGGTTCTTCTTA	ref_2027_fdr	2	1	7	12	2	4	4	3	10	4
GCTTTTCTTTACGCTC	ref_2027_fdr	51	43	66	80	70	57	50	55	60	49
TATTCGGCTTGGGTGT	ref_2027_fdr	49	44	57	57	58	49	37	49	40	36
CCGGTCCATATCATTA	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTATATGGTTAAC	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GGCGGTCGGATGTCCC	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTTGTGATCTCTC	ref_2027_fdr	19	10	20	18	13	16	17	15	16	21
GGTATGTGCGGGCATC	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TCGACTACGAACTGGT	ref_2027_fdr	12	5	8	6	8	10	14	13	10	6
TCACGTCTCGAAATCG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGCGCCAACATTA	ref_2027_fdr	56	45	76	40	38	68	32	55	49	52
GCGCTAACACCGGGAG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGGGCGGCCGCTG	ref_2027_fdr	43	36	63	67	25	63	50	51	45	52
TTAGGAGCTACTAAGA	ref_2027_fdr	74	64	96	57	42	60	48	53	77	62
TGTGACCTGCCCCATG	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTATCGCATATAATCT	ref_2027_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTGCAAGCCGTGC	ref_2027_fdr	32	20	35	24	12	29	18	22	14	24
CAGCGCTCTTTTTGTG	ref_2027_fdr	21	18	28	25	41	29	30	15	24	20
GGTTTGTTCACTAATT	ref_1105_RC	48	11	64	57	17	64	11	61	24	47
GTTTACCGTAGTGCTT	ref_1105_RC	62	14	63	51	14	51	10	69	9	55
GGACTAAATTAGATGC	ref_1105_RC	38	9	43	32	8	41	8	27	11	33
TTCGCCCCTCAGACTT	ref_1105_RC	316	88	364	339	94	312	106	275	94	294
ATGGCAATGCAAACAT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
ATTTAGGATGCACTAT	ref_1105_RC	0	0	1	0	0	0	0	0	0	0
CAGACCTCACCGCTGA	ref_1105_RC	50	27	72	91	35	54	11	73	11	58
CTGTCAGACCTAAGGC	ref_1105_RC	22	20	51	38	26	31	13	31	19	30
GTAAATTTTATGTCGT	ref_1105_RC	34	15	51	63	17	48	8	40	12	43
CGTTTTTGCGCGTTTT	ref_1105_RC	88	28	128	87	24	112	29	90	32	107
TTTACCGCCGCCATGT	ref_1105_RC	1519	423	1937	1649	395	1368	429	1488	446	1431
TGACATTTTTCGGCGA	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TTTAATGCAGCCTCAT	ref_1105_RC	28	3	39	20	3	15	9	28	6	20
CTATGTGCAGAAGTTA	ref_1105_RC	340	93	409	352	91	343	111	329	94	327
CTCCTCGGTCATAGTT	ref_1105_RC	7	6	2	1	8	5	7	5	6	1
CTCCAACCCCCCGTGC	ref_1105_RC	16	11	24	25	16	19	12	19	22	31
TGGTCTTTCTGGTCAC	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
AACAATACCCCCGAAA	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TTAAAATCGTGCAGTC	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
AGAGACACGAACTTGC	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TTACCCTGATCCTGTT	ref_1105_RC	221	56	274	232	73	224	72	218	54	179
TTACCTACTAACTCAG	ref_1105_RC	128	28	179	154	32	135	32	132	42	121
CTGTTTGCTAGCCTGC	ref_1105_RC	41	18	63	52	15	30	11	50	19	47
TTTCGGCGTACTCCGA	ref_1105_RC	124	60	159	144	37	108	44	109	42	128
GACGTTGAGCATTGCA	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
CTGGGCGCCCTCGCTC	ref_1105_RC	91	31	133	129	29	101	35	108	39	105
TCTCAGTTTGTAAAAT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGACATTTAACG	ref_1105_RC	12	5	19	18	6	16	7	14	5	11
TACGTTGTGGAGCGGA	ref_1105_RC	289	98	328	325	94	324	93	293	121	279
CAGTAGCGATGACGCT	ref_1105_RC	28	1	21	17	6	24	7	22	6	18
TTGCTGGCACACGGGT	ref_1105_RC	132	32	143	124	40	110	27	108	36	108
AAGGCCGCCGTAATTT	ref_1105_RC	3	4	7	6	7	6	8	6	6	9
CGGTCTATAACATAGG	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TCACTTATTACTTTGC	ref_1105_RC	56	14	62	45	23	45	15	50	26	49
GTCCTAATAGACCGGT	ref_1105_RC	39	13	49	58	19	47	17	46	16	44
TCATTAGGTAGTCTAT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
CGGTCCTCATGGGCCT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TTACGCATTTTTTTAC	ref_1105_RC	278	95	360	313	104	263	102	237	116	267
CATTTTTGCCCAGCGT	ref_1105_RC	100	51	146	114	35	89	46	101	28	91
CCCGTCTGAATGAAAT	ref_1105_RC	9	8	12	17	13	7	17	11	13	6
ACGGATCAACCCTTCG	ref_1105_RC	162	40	212	169	53	155	51	153	45	137
TATCACTCCTCATCCT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TAACTTTCGCCTGACG	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TTAAAAGAAATTTCTT	ref_1105_RC	82	24	97	78	22	68	31	78	22	56
CTACTTTGTATCAACA	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTTAGGTCATTT	ref_1105_RC	103	26	122	93	48	104	32	110	33	95
TTGTCCGTCACATATC	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TCCCCTCGTAGTGGAT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TCCCCTCGTAGTGGAA	ref_1105_RC	103	199	149	139	190	90	241	99	226	108
TGTATAAGCCGGCTGC	ref_1105_RC	179	35	196	152	44	148	60	161	53	140
GCTGTTTTGCCTCGAG	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
CCTCAGTTTCACTTCA	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
GGCCCTGTTTACCGCT	ref_1105_RC	342	88	336	333	80	306	96	301	87	287
ATATTAGCCCCAATTC	ref_1105_RC	94	16	114	87	23	60	30	67	22	81
GTGATAGAATGTGTTG	ref_1105_RC	460	143	491	485	145	424	140	389	151	373
TTCTTCTCGGATCTAA	ref_1105_RC	19	5	16	8	3	12	7	9	6	11
TGTTCTCGTCGTTGGT	ref_1105_RC	50	11	59	36	11	36	8	48	12	44
CAGCGCTCTCACCAGA	ref_1105_RC	63	21	84	59	17	55	14	49	16	57
GGCTCCCGGAGTCTTC	ref_1105_RC	592	214	694	580	210	518	200	495	234	504
GGCGTTTCGTAGTTCA	ref_1105_RC	336	111	446	385	91	375	121	312	100	352
TCATGGCATAGTCAGT	ref_1105_RC	56	28	79	50	21	64	22	49	33	50
TTGTCTCCGTGTGAAC	ref_1105_RC	64	28	57	41	34	49	28	56	30	61
CGGTTCCATATGACTT	ref_1105_RC	106	33	134	92	32	105	48	101	43	88
TCGTTGTTTGCTGGAT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
AAGAATGTCGCCTTGA	ref_1105_RC	44	10	56	36	9	47	7	42	20	43
AAGGCTGAACGCTCGG	ref_1105_RC	77	17	91	107	15	76	21	87	19	77
CAGTAACGTCGCTTAT	ref_1105_RC	33	5	50	52	10	38	12	37	12	29
CTCCACATTTTTAGCG	ref_1105_RC	174	58	194	170	57	150	54	148	56	130
TAAGAACGATCTTTCA	ref_1105_RC	454	136	547	462	102	451	143	379	171	380
ACTCTGCCCTATCCCG	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
ACGTGCAGTGACTGTA	ref_1105_RC	46	27	96	56	23	64	25	43	27	54
AGGTGTCATTATCTGA	ref_1105_RC	144	59	212	173	75	144	82	168	63	148
TAAAGTAGGAAGTTCA	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTATTCACGGAC	ref_1105_RC	45	17	44	43	17	54	14	38	10	53
TCTTCCGTCATTTGTC	ref_1105_RC	35	20	51	53	25	47	17	36	14	35
AAACCGCCAGGTTTGC	ref_1105_RC	377	97	462	415	106	378	121	315	126	345
TCGTACAAATACCTAT	ref_1105_RC	108	36	137	127	33	104	29	98	29	76
AAGTAGACACGTACTA	ref_1105_RC	260	70	338	262	69	250	98	270	72	243
CGGGCTGCGTCTGCTC	ref_1105_RC	44	14	76	68	24	61	12	56	17	44
CATGCCGTCTATCATT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
CCGTACCCTGCGGTTC	ref_1105_RC	27	12	28	16	13	26	7	21	15	16
TCTTCTGCGTGTGTCT	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
CTTTTAGGGCTTCGTG	ref_1105_RC	38	14	53	35	14	39	12	53	11	40
CTCCAGTGACCACGTA	ref_1105_RC	357	97	389	328	115	278	118	302	106	270
GGTCGGACCTCAGAGG	ref_1105_RC	188	40	229	187	67	227	62	186	61	185
CATTTCCATCAGGCCC	ref_1105_RC	0	0	0	0	0	0	0	0	0	0
TTAAAAGAAATGATCA	ref_1105_RC	152	46	165	148	52	123	29	150	47	156
TTTATGGGTTCGGTAG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
GATTGTACTGTCTCAA	ref_5092_RC	40	30	40	43	43	19	51	32	49	35
GCGAACGATCTCCAGT	ref_5092_RC	6	7	2	9	6	6	11	6	6	2
AGTGGCCACGCCCGTG	ref_5092_RC	50	48	57	56	56	49	56	50	62	37
CCCATAGGTGACGCTA	ref_5092_RC	47	69	34	43	65	32	70	32	84	35
ACCGAGAAGACTGAAT	alt_5092_RC	57	50	55	46	56	37	73	41	74	40
TGGTTATTTTCTCATG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TAAGGCGTCTGCCACG	ref_5092_RC	60	58	55	57	47	55	58	35	48	38
CCTTGGAGGGTTTCTC	ref_5092_RC	27	59	39	28	50	26	66	28	65	28
CTTCCCGGCCTTTCTT	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTTGCGTTTCGA	ref_5092_RC	49	82	74	73	104	73	72	63	85	60
GGGCAGCATATGGGGG	ref_5092_RC	74	72	69	64	84	76	53	52	58	65
ACCTGACATTAGCATA	ref_5092_RC	33	70	28	26	62	30	71	24	62	15
GCATGTTTGTTACTAG	alt_5092_RC	58	84	72	48	76	61	87	51	89	52
TCTTCTATATGCCAAC	ref_5092_RC	11	6	17	7	11	13	10	12	9	8
AAGTGCGCATCTTTCA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
GAGCATGTTCGCTACA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
GAATATTGTCCCCGCC	ref_5092_RC	33	58	50	40	62	41	53	29	62	38
CAGATTCTTGCGTCTT	ref_5092_RC	41	49	45	51	46	34	53	55	65	33
GATAAATTGGATAGTG	ref_5092_RC	24	26	34	28	39	31	22	23	25	29
ACATTATTTTTTAGCC	ref_5092_RC	28	26	25	29	25	28	24	29	31	14
GTGGTCGCACAACCTC	ref_5092_RC	22	14	35	14	12	16	25	25	33	27
ATAATTTTTGTGGCGG	ref_5092_RC	47	44	64	40	44	53	63	57	41	44
CCAGATTGTCTTTTTA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TCTCATCCGTCGTTGT	ref_5092_RC	81	96	79	93	93	73	92	73	84	87
GTCAAGAACATATAAA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CAGCTGCTCTTCCGCC	ref_5092_RC	52	91	77	76	68	65	69	55	107	54
TTGCAACTAAATCTCC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
ATATTCGCATGTCCTC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
GATATCCTAATGGTCA	ref_5092_RC	21	23	29	34	23	28	23	21	28	20
CAGGACGCAGAGCCTT	ref_5092_RC	41	41	51	51	33	34	36	30	52	32
CAGGAACTTTTGGCTG	ref_5092_RC	54	59	70	55	86	57	57	57	72	60
ACATGTGCTACCACGG	ref_5092_RC	17	32	18	33	32	15	27	15	24	16
TGAAGCCCCTGTCGTG	ref_5092_RC	11	7	12	7	1	4	3	3	6	3
GCTGCGAGTTGGTTGA	ref_5092_RC	2	9	16	14	9	7	8	8	11	5
TAGCCCCTTGACTGGC	ref_5092_RC	30	37	44	32	53	36	47	44	42	33
CATGTTAGATTACATT	ref_5092_RC	51	36	48	51	38	35	41	38	46	52
TTATAGCAGAGCAGCA	ref_5092_RC	11	21	26	28	34	30	27	19	35	25
GTAACCGCCTCGCAAT	ref_5092_RC	6	8	12	12	9	6	8	14	7	12
AAGTCGATGAGAGACC	ref_5092_RC	16	17	24	27	18	19	21	15	24	14
TGCCAATCTGTCTGTG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CATTACTGTTGTTCGT	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TCTCGGGGTTCTTGCG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
AGCAAAGCGTGTATAC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CAAGTCAGAGTGTCCA	ref_5092_RC	3	10	8	12	9	9	11	6	8	9
ATTATCTAATTGCGGA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TGCAGCGGACATTCCG	ref_5092_RC	8	8	16	7	13	12	11	3	7	4
CACGGTCTTCAAGCGA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGTTGCTCTTAG	ref_5092_RC	26	28	21	24	19	28	31	17	14	25
CAGCTGAAAGATCCCG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TGCGCTTTATATGTCC	ref_5092_RC	19	23	24	26	29	19	31	27	31	12
GTCCGTTAACACTCGA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TTAGGTCTAACTAGGC	ref_5092_RC	14	10	21	18	5	7	9	11	15	3
CTATCAACCTGACTCT	ref_5092_RC	4	9	6	10	1	0	2	2	1	2
TTGGGTAGTCAATACA	ref_5092_RC	55	57	61	48	49	47	63	37	51	32
TAGGGAAACAGCGTAG	ref_5092_RC	30	25	47	50	33	36	51	36	44	29
TCGCGGACCGCTGTTT	ref_5092_RC	3	5	2	5	1	2	3	4	7	4
ACCGTACCAGAGATTA	ref_5092_RC	14	21	20	24	13	19	25	12	23	10
GAATAGCACGCACGGA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CTCATATGGCCAACGG	alt_5092_RC	175	178	218	172	173	144	189	146	183	169
AACTCCATCAAATCGC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
ATGTTCCCGCGCGTCG	ref_5092_RC	0	0	1	0	0	0	0	0	0	0
ACACCGGATACAGATC	ref_5092_RC	58	67	68	72	82	71	95	74	81	63
GCTTCTTGGTTTGCCT	ref_5092_RC	121	118	156	116	127	129	135	109	140	97
GCAACGCCCGGTCAAT	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CGTTTCGGCGGGATGT	ref_5092_RC	112	100	140	112	120	120	121	112	119	101
GGGACCTATATAAAGG	alt_5092_RC	7	4	2	6	9	4	5	2	5	2
CCTCGCCCTCCGGTCC	ref_5092_RC	37	35	43	44	31	39	44	37	45	39
GTACGACTGTGTTTTA	ref_5092_RC	47	52	48	59	64	40	56	28	68	36
AAGGTCATTCAAAGCA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TTGTTCCCGCGCGTCG	ref_5092_RC	300	312	357	346	372	277	325	289	351	258
ACTCCGGACCGAGGTC	alt_5092_RC	33	48	47	39	62	42	55	43	64	33
GTGGTCAGGAGAGTCG	alt_5092_RC	234	284	314	249	319	234	257	233	299	208
GTGGACCTTCATCTTT	ref_5092_RC	89	109	135	108	116	112	118	122	108	112
CACGTCGACTGTTCTT	ref_5092_RC	85	143	99	84	166	80	139	91	133	92
TCCGACTAAACCACGG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTTGGGAGGTTT	ref_5092_RC	74	124	85	86	93	92	102	98	114	73
ATGTCGAACGGTCTCA	ref_5092_RC	4	5	15	5	9	7	6	5	10	6
CTGGTTTAATTAGCGG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TGTGTCGCTGTCAGGC	ref_5092_RC	4	4	5	2	5	7	5	10	5	11
GAGCCGCACTTCACTT	ref_5092_RC	8	5	9	7	10	6	8	9	11	5
GGGCCTTATCTTAGAC	ref_5092_RC	21	12	13	12	13	27	10	13	16	20
ACAACGCAGCTGCTTA	ref_5092_RC	4	13	10	4	20	9	17	6	10	11
GAAAGGTAGGTCAAGT	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CCACGGGGTCCGGGTG	ref_5092_RC	11	22	18	13	12	12	25	13	13	15
ATCCCTCCTACTTACC	ref_5092_RC	8	32	9	6	38	4	27	4	40	6
GACCGGGGTCTTCGGA	ref_5092_RC	11	14	12	9	14	9	7	9	10	9
TGGTCGTGAAAAAGCA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TTCTTGTAATGAACCT	ref_5092_RC	2	5	4	6	2	4	1	4	1	11
CCAGAACTTTTACCCA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
ACTCGAACTCGCACTC	ref_5092_RC	4	21	7	6	15	6	26	6	14	4
ACCTACAATCGGTTCT	ref_5092_RC	42	67	59	55	65	52	75	36	75	49
GGTGGTGTGGAGAATC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TCTCAATATGGCAGCT	ref_5092_RC	0	2	0	5	1	0	0	2	2	1
CAGTAAGCCTGCCTTA	ref_5092_RC	13	15	18	10	14	8	15	8	12	10
CCCTTTGGTATATGCT	ref_5092_RC	104	200	148	102	176	101	205	97	210	84
GGATTATATATAATAA	ref_5092_RC	13	8	14	9	14	24	14	12	13	16
AGTTAAGCCTGGCTTG	ref_5092_RC	35	54	38	39	50	30	49	39	52	26
CTCGTCTCCCGCGGTT	alt_5092_RC	4	14	3	8	10	8	4	5	9	3
ACATTTATGCGTGCTA	ref_5092_RC	13	24	26	23	13	30	30	18	25	28
TCTCGTGGGAGAGATC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CCGGTAGGCGATCGTC	ref_5092_RC	32	36	25	30	30	27	19	21	33	13
TGATAACGGTATTTAT	ref_5092_RC	15	23	14	19	23	15	20	17	14	21
TCTGCAAAGTTGATCC	ref_5092_RC	25	36	38	35	51	28	27	39	33	37
ATATATCGGAGATCTC	ref_5092_RC	25	40	41	25	32	45	43	20	37	17
TTTCACTCTTAACACG	ref_5092_RC	33	27	27	35	27	32	26	28	25	30
GCGTCAAAGTGTTTTG	ref_5092_RC	4	13	10	7	10	10	9	5	6	8
TGGTCTTGGCGTGAGG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TTTTCACTAGCTTCAG	ref_5092_RC	3	7	1	2	2	2	5	1	6	0
TCATGCAGGTGACAAG	ref_5092_RC	16	22	21	16	22	20	20	7	19	22
TCCTTTTCTTTTTAGG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CTCGTTGGTACTCTTC	ref_5092_RC	0	0	0	0	0	0	0	2	0	0
TTTCAGATCTGTCTAG	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CTTGCTTTACTTGCGA	ref_5092_RC	3	3	11	3	9	8	4	3	9	8
ATGTGCACATTCGCCT	ref_5092_RC	5	10	9	13	7	3	3	5	7	5
ATAATTTGACTCTTGT	ref_5092_RC	30	34	45	21	18	39	32	38	44	35
ATTTGCGTATAGCCCC	ref_5092_RC	45	41	67	39	48	27	51	41	46	38
GCCTCGTACAGTCACT	ref_5092_RC	36	60	75	60	46	52	41	37	55	41
CGGCACCGGCCTGAGG	ref_5092_RC	114	118	119	101	123	90	128	103	137	116
TATGTAGCTTTTAACC	ref_5092_RC	43	46	43	47	46	37	48	47	72	34
ACGGCCTGTAGCGTTA	ref_5092_RC	6	11	8	9	12	11	14	5	13	4
AGGCCCCAGCAAACCT	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CTTTTTTTCTATTTCG	ref_5092_RC	63	63	73	71	48	73	89	68	76	43
ACACGGTTCGCTGGTG	ref_5092_RC	43	46	65	48	54	45	37	44	41	37
GCCGTTGGTCTTGTTT	ref_5092_RC	63	72	64	66	66	58	95	64	76	56
AGTCTATTCGCGGGTT	ref_5092_RC	52	46	70	58	47	43	42	51	54	26
ATTGCCGGCTCGATCC	ref_5092_RC	21	29	31	19	23	25	22	23	23	18
ATTTCCCATAGTCATA	ref_5092_RC	5	10	12	6	14	5	14	4	13	7
CACATCGGATTTTACA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
TGTCATGGGTTCACTA	ref_5092_RC	45	55	69	58	65	43	67	48	50	42
AGAAGTTGATATTTTT	ref_5092_RC	22	14	16	18	13	9	15	6	12	16
AGGTGTGACAAGAGTT	ref_5092_RC	59	86	78	58	81	56	93	72	98	62
TTTAACATGCACGGCC	ref_5092_RC	125	96	140	124	116	119	127	138	127	100
GTATTAAGTCAACAGA	alt_5092_RC	72	70	95	72	56	76	58	51	69	72
CTGGGTTATCTGTCTT	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CTTGGGGTGACTGTTG	ref_5092_RC	4	3	10	5	8	3	3	4	11	9
TAACCTTTGCCCCTTC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
GCGGATAGGCACATCG	alt_6086_new	110	228	151	157	237	136	246	134	263	106
TTCTCTAGTCTGTCAG	ref_5092_RC	7	16	7	5	5	12	14	4	10	5
CTTTATCCTGACGGCT	ref_5092_RC	16	27	24	27	19	24	14	18	28	10
CTGGATTTTTTTGGAC	ref_5092_RC	68	78	78	65	69	63	74	56	80	59
CTCCAGCCCCCGTTTC	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
CGGAATCGATTCTATC	ref_5092_RC	68	68	56	52	62	61	66	66	73	53
CTGCCTTAAGGTTCCG	ref_5092_RC	10	14	15	11	14	12	13	13	12	16
AAGCAAAAATCTAACG	ref_5092_RC	3	4	6	8	7	4	4	3	1	5
GATGCTCATGCTATAT	ref_5092_RC	23	18	26	18	20	24	24	17	21	11
TAATTTTGTCCCTATA	alt_6003_new	8	11	7	7	12	10	14	8	10	11
ACGGCGCGCCTCCAAA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
ATACACCGATGCTTCA	ref_5092_RC	0	0	0	0	0	0	0	0	0	0
AACTATAGGATGTCGG	alt_3303_fdr	61	39	54	51	60	64	33	53	35	53
GATCTAGGGCATCTTC	alt_3303_fdr	139	99	155	115	102	140	112	138	111	122
CCGCGCCCTCTAAGTG	alt_3303_fdr	34	34	53	63	53	51	42	49	45	42
CACACGTAGCAGTTAC	alt_3303_fdr	15	9	24	11	17	18	16	7	8	11
ATTTGCGGATTTCTGG	alt_3303_fdr	14	6	10	20	10	16	8	17	4	14
CTTCCTTATCCCTAAG	alt_3303_fdr	89	45	103	80	64	65	57	71	57	71
TCTTTAGTCCGAGAGC	alt_3303_fdr	52	57	73	72	47	50	57	71	51	43
GTTCTTGCCACGTCTG	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
GCAGACGACAAGTTGT	alt_3303_fdr	140	71	170	136	95	102	90	116	101	111
TTCATTTTTAAGGAGT	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
GACTGGGCCCGCCCAA	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
AAATTAACGACTGTTG	alt_3303_fdr	90	52	134	84	50	86	34	82	59	83
AGGGACGGCTTAACCA	alt_3303_fdr	505	309	585	515	340	501	279	463	338	489
TGCTATTGTGCATTTA	alt_3303_fdr	38	32	45	43	33	36	22	38	31	38
CTTCCTTGTCAACGTA	alt_3303_fdr	42	33	66	30	40	37	44	48	39	27
ACCCCAGTACGTTAAG	alt_3303_fdr	81	49	100	82	45	71	43	84	57	68
AATACAATATAGCGCA	alt_3303_fdr	112	71	147	120	67	133	93	141	74	96
GGCAATAACGCCATGT	alt_3303_fdr	138	59	195	141	73	142	66	130	70	147
GTACGTTCCATCCTCC	alt_3303_fdr	52	34	69	52	41	43	34	46	29	52
CTCTCCATCAAAGACG	alt_3303_fdr	78	59	102	102	58	82	55	77	59	84
CTGGCGTGCCTTGAAT	alt_3303_fdr	70	60	92	102	45	86	63	79	52	79
TTGTTCGTCCTCGCGC	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAACACTCTGTAG	alt_3303_fdr	17	9	17	16	2	11	8	13	7	9
GACCCTCCCCAATCCT	alt_3303_fdr	54	29	74	55	38	67	29	83	44	51
ATTGATTTTGGCTAAT	ref_3303_fdr	8	1	5	6	2	1	2	4	2	4
GTCTTTTAATACGAGT	alt_3303_fdr	97	61	107	92	73	87	78	94	77	90
AGGATCTGTTGCCTAC	alt_3303_fdr	60	26	53	48	38	45	31	41	33	35
TTCCTCTAGATTTTTT	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGGTGTTTACTCC	alt_3303_fdr	15	9	23	9	7	18	13	17	2	11
CTATTTGTAAGATTCT	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
GATTTGCGACCTTCCG	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTCCATTAATCGG	alt_3303_fdr	26	21	22	18	9	19	7	33	22	35
GTTTAGGTATCCCAGA	alt_3303_fdr	147	76	170	150	93	132	75	151	116	145
CGGACAGATACGGAGT	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
CGCACCTTGTTTTAAG	ref_3303_fdr	93	64	125	122	80	104	92	87	85	91
TGATCTCAAGCCTCGA	alt_3303_fdr	94	68	99	78	54	87	51	95	57	82
AGTGGTCGCATCCCCG	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTCCCGCGCTATT	alt_3303_fdr	46	24	59	50	33	56	39	43	38	44
TTTTTCTCCTGCCCTT	alt_3303_fdr	14	9	14	16	13	14	13	11	15	15
ATAGTGGTACAATCCC	alt_3303_fdr	0	2	0	0	4	0	9	0	5	0
TTTGCTTGGCGGTCTT	alt_3303_fdr	39	16	38	38	25	31	21	30	31	31
TACTGTGGCTGGGGTT	alt_3303_fdr	29	24	39	22	18	31	26	14	20	17
GCGGTTTACGATTGTC	alt_3303_fdr	6	32	10	10	26	13	23	15	23	6
CCCTTATGGCAGTCGC	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
TCTTAGTCTTCGATTG	alt_3303_fdr	22	21	15	21	15	20	7	15	10	12
TTGTGATCAAGCCCCA	alt_3303_fdr	11	7	18	15	9	11	9	16	13	6
AGGTTTAACGCCGGTG	alt_3303_fdr	41	30	43	47	21	38	34	53	33	46
TCTCATAGTGAGCACA	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAGCCCTGTTCCA	ref_3303_fdr	354	267	476	406	269	388	284	392	269	334
TCGGAGTAGTAACAGG	alt_3303_fdr	55	42	72	62	39	71	24	48	43	76
CCCGATTTTTGGTTCG	alt_3303_fdr	33	36	34	29	39	26	38	18	50	17
CTGATGGGCGAGCTAC	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
CTTACCGGTGACCAGC	alt_3303_fdr	69	37	59	83	59	63	52	60	67	40
GACTAGCTGGTTATGC	alt_3303_fdr	43	17	48	29	32	53	33	40	33	38
TACATTTGCATACTCT	alt_3303_fdr	58	31	74	49	46	40	45	62	41	38
ACCATACACATGAATA	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
GATTTGGTCTGCTTAT	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGAGGAGATGTGA	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
AGTATTAATACCTTTT	alt_3303_fdr	109	71	123	107	57	96	78	86	72	89
GGGTATACGTTTGAGT	alt_3303_fdr	63	31	76	57	44	65	34	46	40	52
CTGAGCTATCTATCCA	alt_3303_fdr	74	47	111	104	77	88	77	101	70	70
GGATCATACTGGTTAT	alt_3303_fdr	137	90	164	105	95	147	101	123	89	108
TGCATTCTTTTGGCTA	alt_3303_fdr	163	105	212	142	76	139	96	158	98	137
TAGGCCGCTCCGGTCC	alt_3303_fdr	19	15	35	30	24	18	12	22	15	32
TTAAGGTAACCCTAAG	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCCACCCTCTACT	alt_3303_fdr	13	23	32	17	26	11	16	18	22	20
GGTAGTACTCTCGCAC	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
GGAGAATTAATCCTTA	alt_3303_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCCTGCTCCTATG	alt_3303_fdr	21	4	14	6	17	7	6	7	12	13
TTATTGGATATGCGCG	alt_3303_fdr	25	28	30	30	9	42	25	28	27	19
TTGTGGTGCCTGGGCT	alt_3303_fdr	48	19	37	24	16	34	19	30	21	32
TGTCAACTAACCGGGC	alt_3303_fdr	85	58	85	87	53	81	49	75	54	65
AGCCTTCCGGAATTCT	alt_3303_fdr	76	64	73	79	74	48	57	78	57	63
CCATTATCGTCGTTTC	alt_3303_fdr	35	19	38	27	25	37	40	30	31	27
GGTCGCCTTTGACCTT	alt_3303_fdr	92	44	92	92	53	62	44	75	39	77
ATGATGCGTTATGAAA	alt_3426_RC	692	229	859	758	238	682	232	701	262	581
ATAGCTATTTCAATTA	alt_3426_RC	52	23	74	51	18	48	16	43	18	35
GGTTCATAGCTGGTCT	alt_3426_RC	157	58	209	179	51	162	51	149	62	113
GCGGCTCTGGGCAGTG	alt_3426_RC	17	12	17	26	6	26	4	18	6	13
CCAGGGTCCAGTGTCT	alt_3426_RC	175	77	197	164	53	167	68	179	63	154
CTTCCTTTGCTTCATC	alt_3426_RC	131	44	204	182	37	149	44	134	48	137
GCGCTTTGAACTTCGT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
CATCGCTAATACCTAT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
AAGAATACTGGGTTCT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
CTCCCTATAATATAAC	alt_3426_RC	20	14	19	17	7	21	12	15	8	8
CACGACCTCCTGCACG	alt_3426_RC	430	150	543	463	137	413	148	363	158	361
TACCCGTTCCCTTTCT	alt_3426_RC	158	45	208	188	76	125	49	166	59	134
CGCGAGGCCGTCTTAA	alt_3426_RC	11	11	27	13	10	15	4	30	5	18
TGTACGTTGCTCAATG	alt_3426_RC	92	21	100	81	24	74	26	67	34	71
CTTCATATGATTGATA	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
GTGCCCCCCCGTAAGG	alt_3426_RC	311	117	333	300	123	249	104	312	121	277
TCTCACGAACAAACAT	alt_3426_RC	236	93	274	306	98	232	57	220	73	212
CTAGTTGAGGTTCAGA	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
CTCTGAATCCCTTTAC	alt_3426_RC	332	152	457	397	163	333	178	306	163	332
AGTGTTTGAGCATTCT	alt_3426_RC	349	136	460	364	117	307	119	346	194	326
TTCCCGTTCCACCGCT	alt_3426_RC	19	6	26	21	5	13	5	30	5	15
TAAGTCCTGCGTGTCA	alt_3426_RC	79	18	84	87	25	72	26	83	21	58
GTAGTGTTTGAGCTTT	alt_3426_RC	23	15	25	21	6	21	12	21	12	24
TAATATGCTTCCACGC	alt_3426_RC	80	23	109	105	24	86	17	80	23	86
TGCAGTGCGTTCCCTG	alt_3426_RC	265	109	371	355	120	318	123	307	114	267
AATTGTCTTTCTTAAT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
GTATGGATATTTCGCT	alt_3426_RC	48	9	34	43	12	44	14	51	9	40
ATCAAGGCAGAGAATA	alt_3426_RC	44	18	78	46	18	40	24	53	19	57
GCGGACCTTGGTAGAG	alt_3426_RC	126	29	135	112	41	125	53	144	43	107
GTTTTTGCCGGTCTTG	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
ATCTGGGACTATCGGT	alt_3426_RC	160	47	192	165	54	148	50	146	63	135
CCCCTTTCGTCGTAGC	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
TATCGGTGCTCGTGCG	alt_3426_RC	866	323	1062	968	329	810	285	858	299	788
TGTCCGTCGTAGACTC	alt_3426_RC	58	23	86	60	17	62	22	49	14	54
GCTTCTACCCCACCTA	alt_3426_RC	46	19	61	40	22	39	32	39	26	44
GAACCACTCACGAGGT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCATGCCTTTAC	alt_3426_RC	13	12	23	17	6	16	4	20	2	19
AAGGTATGCCTTTGTA	alt_3426_RC	24	13	51	41	17	50	4	38	19	35
AGTCGTACGGCGTGGC	alt_3426_RC	125	41	107	104	40	71	25	87	36	94
TCTACTTTCCGTTTCT	alt_3426_RC	15	4	19	14	3	10	2	17	0	12
TATCGGTGCTTGTGCG	alt_3426_RC	1	0	0	0	0	0	0	0	1	0
CGATGGAAGGTTTCAG	alt_3426_RC	213	63	247	195	71	206	70	169	50	150
GGCTAGGATTTTCTTT	alt_3426_RC	43	17	58	59	6	55	18	45	23	45
TGCTATGAGTTTTCAT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGTTTCGAGTCA	alt_3426_RC	115	36	122	88	31	98	39	89	35	87
GTTCTCAACGCATTCT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
TGCTGCTGCGTGCTAT	alt_3426_RC	281	101	317	319	80	244	118	232	106	213
TTCCTCTTCAGCAAGA	alt_3426_RC	28	11	23	22	9	22	9	24	7	26
GACATAAATCCCACTG	alt_3426_RC	87	17	68	85	26	65	29	88	21	76
TGACCGCTAGCTGTAC	alt_3426_RC	13	4	17	9	3	4	7	9	2	11
TCGCCTAAAAGGTGCA	alt_3426_RC	83	52	134	98	44	96	32	92	46	88
GGCCTTCCGTATACTA	alt_3426_RC	443	144	548	482	130	465	145	482	143	443
CGTGTACGTCCCTCGG	alt_3426_RC	33	25	44	23	26	25	24	25	33	38
CTGTAGGCGAAGGTAC	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
CCATCGTTGCTTCTGC	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
CGTAACATTGGTACTA	alt_3426_RC	18	11	35	22	5	19	10	21	8	27
GACGAGCCCATAATCC	alt_3426_RC	399	134	440	393	122	354	129	336	131	307
CAGGTGTACCATCGTT	alt_3426_RC	36	12	48	40	12	42	14	31	15	24
CGCGGGCAGGCTAAGG	alt_3426_RC	123	48	142	126	51	124	61	102	40	98
TTTATTGCGTTGTATT	alt_3426_RC	123	35	151	122	46	106	46	98	43	113
AGAAGTGTATGGTTTA	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
TACGTGGGCTTCCCTA	alt_3426_RC	113	20	121	92	35	96	29	97	40	95
TCGCTCATACACCACT	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
ATGACGAAGATGTCGA	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
CTTCTATGCTTTGCTA	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
GTACTCACGTGGTAAT	alt_3426_RC	107	62	137	130	52	112	59	101	47	80
GATTCTCAAATAGCGC	alt_3426_RC	88	37	107	101	30	73	42	106	28	90
ATCGCTCCCTTCCTAG	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
TCACATCAAGCGTTAC	alt_3426_RC	0	0	0	0	0	0	0	0	0	0
GGATTGAGTTGGGTTA	alt_3426_RC	394	140	482	420	129	390	136	432	128	377
TCGGGTATACGGCGTA	alt_3426_RC	16	6	24	16	3	19	7	17	4	12
GGCTTGGCTGGTATCC	alt_3426_RC	136	32	146	137	38	125	32	98	38	106
CAGTGGCGGGCCATAG	ref_2011_reverse	118	79	157	128	91	145	109	108	103	97
TCCACAAGGCATTTAT	ref_2011_reverse	159	114	188	149	153	137	113	136	132	126
GAAAGTCCGGGAAGGG	ref_2011_reverse	125	73	104	96	71	81	79	97	71	76
CCCGATTGGTCATTTC	ref_2011_reverse	1	1	3	6	5	3	5	4	9	4
ACAGCTCGTGGATATC	ref_2011_reverse	37	40	70	50	49	40	57	38	62	34
GATGGAGTCTTGTTAT	ref_2011_reverse	98	64	118	97	64	109	86	93	64	106
CCAGCTGTTCCATTGA	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCGGGGGCATTGT	ref_2011_reverse	68	54	63	61	47	68	52	67	57	49
ATGTCTGACTCGTAAT	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCAGTATATTACG	ref_2011_reverse	54	67	69	62	49	53	39	70	72	63
AGTGTCACAGGAGTAG	ref_2011_reverse	75	54	90	61	63	81	64	57	51	72
AGTTCTGGGCTGGTAT	ref_2011_reverse	102	86	119	91	89	99	92	118	108	106
ATTCTATTGATGGAAC	ref_2011_reverse	82	77	87	71	76	51	82	63	66	74
TAATCTTCGGTTGCAT	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
AACTTAGGGTTGTTGG	ref_2011_reverse	99	83	134	107	94	104	102	110	96	97
CGTTTATGGTTCTGTG	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
GATTCTTTCGTTTCCC	ref_2011_reverse	129	96	175	144	87	141	116	113	92	137
CTTACTGCCGAATTCG	ref_2011_reverse	24	28	24	27	42	21	21	24	37	18
CTTTTTAGGGGTCGAA	ref_2011_reverse	8	7	11	12	9	2	10	8	6	10
TCCGGAGCTCCTAGAG	ref_2011_reverse	15	15	25	24	13	25	7	25	25	24
TGCCTGATTGCCTAGC	ref_2011_reverse	25	30	31	28	24	31	17	21	25	18
GCCCCCATCTGATCCG	ref_2011_reverse	17	8	14	12	12	8	11	12	15	10
TTTCGTGTTGTGTCCC	ref_2011_reverse	56	35	72	51	44	57	45	35	54	47
TCCAATGACCTTAATC	ref_2011_reverse	116	108	157	134	101	92	80	114	110	85
ATAACCAAGGCCAGCA	ref_2011_reverse	74	54	85	92	73	70	65	87	56	60
CACTCTTTATACCGTT	ref_2011_reverse	1	0	1	0	1	2	0	0	0	0
ATTTGGATCATCTCTG	ref_2011_reverse	48	25	45	58	27	41	37	62	46	41
TCCGACGTTCACAACA	ref_2011_reverse	22	34	42	37	27	31	33	34	27	44
CTCTCCATTCGCGCAT	ref_2011_reverse	13	8	15	14	26	11	12	12	18	14
GCGGGGGCTTTAACTG	ref_2011_reverse	40	30	57	53	43	48	56	37	49	41
CCTAGCCACTTCATGT	ref_2011_reverse	10	46	16	16	48	15	43	11	38	21
TTTAACACTGTTTCCA	ref_2011_reverse	28	15	22	15	18	28	10	31	13	17
GGAAGTGACACCAGCT	ref_2011_reverse	101	78	121	109	81	81	80	102	97	94
CTAAGCCCCTATCTGC	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
GGTATAGGGCTGCCAT	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCTCTTTATGGC	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTTCAGTATGTTT	ref_2011_reverse	125	86	113	110	80	110	80	88	85	79
TGTTATAAGTCGTATC	ref_2011_reverse	3	5	6	10	8	6	6	6	10	10
GGTATAAGGCTGCCAT	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTGGCTTTCTGAT	ref_2011_reverse	156	112	164	131	105	130	96	104	92	115
TGTGTTGAGTCCAGCG	ref_2011_reverse	7	4	9	7	7	7	2	5	4	7
TGGTGTCGCGTGCTCT	ref_2011_reverse	94	103	101	122	94	112	87	105	83	99
GCCGTGTAAGCACTGG	ref_2011_reverse	47	63	59	65	71	53	78	72	65	54
ATGAACCGGTTTCGGA	ref_2011_reverse	20	14	35	16	15	18	31	16	22	14
ATGCCTACGGGTATTT	ref_2011_reverse	37	27	32	31	20	22	25	33	9	25
GGGTTACACATAGGCC	ref_2011_reverse	68	50	76	65	57	62	59	67	59	59
CGTTTAGGAGTAAAGG	ref_2011_reverse	152	115	194	177	127	185	131	153	123	132
TTATGACCTGTAATTG	ref_2011_reverse	61	63	89	76	69	75	73	62	91	64
GAACACTGTCCCTGTA	ref_2011_reverse	7	7	19	19	5	14	9	11	9	15
TGAGCTATGTCAAGCG	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
GCGCACGATGTTATCT	ref_2011_reverse	1	3	12	8	8	3	4	1	2	5
CAAGCATTCTGTGATC	ref_2011_reverse	29	30	45	36	25	29	15	34	17	26
CTGTTTTACCTGCATT	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
TTAATTTGAACCTATA	ref_2011_reverse	23	14	17	30	19	18	21	23	16	10
GGGTTACCTGGTCAAG	ref_2011_reverse	43	44	51	50	47	42	41	42	34	48
AAATGGACGGGGTGTT	ref_2011_reverse	57	53	100	56	55	63	49	56	42	75
ATCCACGAGGATGGGG	ref_2011_reverse	193	101	251	196	133	153	155	198	140	186
TGACATGCCCCGGATT	ref_2011_reverse	53	41	60	54	31	43	30	51	35	74
GATTCCCCAGGATGCC	ref_2011_reverse	32	24	23	29	14	18	22	19	23	29
CGAACCTAAGCTCGGA	ref_2011_reverse	57	45	75	60	46	86	53	67	49	64
TCAATCAGTCTGACCC	ref_2011_reverse	42	40	73	66	52	39	52	40	48	43
TTTTTGCCGGTAAGCT	ref_2011_reverse	30	15	40	43	27	23	24	33	25	29
CAACCGGGTATACCAG	ref_2011_reverse	43	36	39	33	24	25	42	24	32	26
ATTAATAAGCTCTTAT	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
TCAATGTAGATACTCT	ref_2011_reverse	13	15	24	12	13	15	11	14	17	23
CGGCTCACCAATTGCG	ref_2011_reverse	59	49	69	50	47	53	47	52	55	39
TAATGTCATTTTGGCA	ref_2011_reverse	32	36	34	36	30	41	25	35	31	30
TTAGAGACTGCTAATA	ref_2011_reverse	29	28	43	26	18	28	27	31	23	31
CGTTTTTACACGAGCC	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
AGAATCCGGCGGTCGT	ref_2011_reverse	13	12	15	9	3	10	5	5	4	3
CTACCATTTTTCACGG	ref_2011_reverse	61	55	80	50	58	51	48	68	63	54
CTTATAGACAAATCTG	ref_2011_reverse	22	21	23	25	23	19	25	16	15	26
GATCCCTAGCAGTTGA	ref_2011_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTTGTTAATAGAT	ref_2011_reverse	44	36	53	39	36	43	35	41	39	52
TGGCTCGCCTCCTGGT	ref_2011_reverse	35	31	59	40	32	32	32	39	36	34
GAGTAGTTCAACACCA	ref_2011_reverse	26	32	49	36	35	37	36	42	32	29
CTTGGCTCCCTAGCGG	alt_5695_new	41	58	43	51	42	31	48	33	43	45
TATTTGCCTATTTGTT	alt_5695_new	10	12	7	6	4	14	8	8	9	10
TTACGTCGTTGATCTC	alt_5695_new	16	11	18	20	20	23	15	27	18	17
CCAATCTGTGGTCTGC	alt_5695_new	14	34	33	29	46	21	35	16	53	18
ACCACGTATACACTCA	alt_5695_new	8	10	17	5	10	5	6	6	8	8
CAGGGCATTATTCGGC	ref_5695_new	63	62	72	64	53	56	79	55	72	62
AGCACATAATCTGCCT	alt_5695_new	33	23	30	32	29	18	34	33	18	28
CACGCTTAGTCATTTT	alt_5695_new	0	0	0	0	0	0	0	0	0	0
TGGGGTGCCTCTACCA	ref_5695_new	19	15	21	13	19	20	19	17	31	16
TTACAAGTGATCACCA	alt_5695_new	34	35	34	32	28	34	31	33	20	21
GATTTAGTCAGGTAAA	alt_5695_new	26	32	28	19	23	24	24	19	26	12
TTGAGACTCGTGGACT	alt_5695_new	31	22	43	36	20	32	23	21	21	26
CTGCTACAGGATAGTC	alt_5695_new	8	8	7	9	5	12	5	7	14	14
GTCCTTGGTATGAAAT	alt_5695_new	10	8	11	6	13	8	11	11	14	13
TCTCATCCGCACTAGC	alt_5695_new	1	2	1	3	2	2	9	2	9	2
CGCATACCTAGTTGTG	alt_5695_new	85	60	75	82	74	56	90	71	82	54
GACTAACCGGGCCTAT	alt_5695_new	24	32	25	36	24	28	38	23	33	20
TGATGGTTCTGATCCA	alt_5695_new	122	96	154	147	92	134	110	131	115	107
GGCGCGTCGCGAGGTT	alt_5695_new	78	107	105	95	88	72	97	72	68	94
ATCTTACAATCGACGG	alt_5695_new	54	58	62	80	55	52	68	63	63	55
GACCGCGTTTTAGTCG	alt_5695_new	0	0	0	0	0	0	0	0	0	0
CATGTATACAGTGTCG	alt_5695_new	6	6	10	2	12	9	12	2	5	6
CCACCAGGGGTCTATG	alt_5695_new	71	52	83	53	53	41	50	43	59	60
CATAAGACTTATTTCG	alt_5695_new	5	11	7	9	7	14	9	10	17	6
GCTACCCCTCTTTCTT	alt_5695_new	10	7	17	13	10	14	16	19	12	7
AAAATCTTCTTGCGCT	ref_5695_new	1	1	2	2	0	2	0	2	0	0
TTTCATTAATGGGACG	ref_5695_new	19	31	20	14	27	15	37	15	33	20
TACCCTACTGCTCGTG	alt_5695_new	0	0	0	0	0	0	0	0	0	0
AATAATTGGTATCTTT	alt_5695_new	17	19	28	16	17	16	23	18	24	12
ATGTGAATGCGTGGCT	alt_5695_new	0	0	0	0	0	0	0	0	0	0
GCATTCGGCTTATTCC	alt_5695_new	71	56	64	68	59	56	61	67	58	60
GTTAAGTGTTTAGTGT	alt_5695_new	11	16	18	15	18	10	13	8	12	9
CGATAGGACCGTACTT	alt_5695_new	18	13	13	12	6	9	7	11	19	17
CGGAGCGGCGCCCTGC	alt_5695_new	81	41	93	84	44	64	45	58	58	76
GGATCTGTGACATCCC	alt_5695_new	0	0	0	0	0	0	0	0	0	0
GTAAGACGTCCCTGGG	alt_5695_new	0	0	0	0	0	0	0	0	0	0
CATGTCAGTATGTGTC	alt_5695_new	9	9	14	13	11	18	15	9	12	10
GTTGCCCATTATACGG	alt_5695_new	38	31	47	32	28	44	37	31	43	28
ATGTTGGGCCACGTAT	alt_5695_new	16	21	28	24	19	19	19	20	10	27
ACTTGAAAAACAGCCT	alt_5695_new	18	26	28	29	19	24	28	23	22	22
GGTACTAACCAGCTAT	alt_5695_new	15	10	17	16	12	13	11	14	11	14
CCTCCTAGTGGGTCAT	alt_5695_new	0	0	0	0	0	0	0	0	0	0
TGTTGTGATCTTCTGA	alt_5695_new	0	0	0	0	0	0	0	0	0	0
AGCTGTGTAATACCGG	alt_5695_new	93	77	135	96	79	93	76	95	87	86
CACTGGTTTCTGACAC	alt_5695_new	108	73	118	95	78	82	83	93	105	79
TGTTAACCGCGTAAAG	alt_5695_new	9	12	24	11	12	20	18	8	8	10
GTGCCATAAGCCACTT	alt_5695_new	104	62	119	89	66	76	67	74	83	74
CTACTTGTCGCGTCCA	alt_5695_new	0	0	0	0	0	0	0	0	0	0
ACTAATTCAGGAGTTT	alt_5695_new	27	23	30	23	24	32	21	19	21	19
AGGACTTTGTGCTCAG	alt_5695_new	0	0	0	0	0	0	0	0	0	0
ACCCGGTGCTACTCGT	alt_5695_new	8	19	12	6	3	13	9	7	5	4
GGTGCGTTCGTCCGAA	alt_5695_new	63	59	63	92	70	54	73	84	61	64
CCTCTCCATCTATCTT	alt_5695_new	26	20	30	28	13	14	20	17	28	15
TCAGCTGGCCTAAGTT	alt_5695_new	54	36	62	41	45	55	54	41	49	58
TGGGTGAGCTACGCAC	alt_5695_new	12	6	16	11	13	7	8	12	13	9
AGTTTCGTGTACTGCT	alt_5695_new	0	0	0	0	0	0	0	0	0	0
CCGTCGTGTGAGAGGC	ref_5695_new	33	92	43	26	90	14	94	21	102	31
AATAGTATGCCTGCAG	alt_5695_new	0	0	0	0	0	0	0	0	0	0
TGGCAAGGGATCGATC	alt_5695_new	0	0	0	0	0	0	0	0	0	0
CTTTGGACAACGTATG	alt_5695_new	0	0	0	0	0	0	0	0	0	0
TTTTGGCATTCTGTCC	alt_5695_new	0	0	0	0	0	0	0	0	0	0
TCAATTCGTCCTCGTC	alt_5695_new	58	53	60	45	48	46	42	43	55	61
AACTTACTGGGGTTGC	alt_5695_new	65	60	73	58	61	52	68	53	60	49
AACGTGTTGAATGTCA	alt_5695_new	11	12	21	9	10	10	10	12	9	17
GCCCCCTCTTTTTCGA	alt_5695_new	48	24	55	51	31	51	20	62	34	31
GCTCGCGCATACTCAT	alt_5695_new	0	0	0	0	0	0	0	0	0	0
AAAGCGGATACTGCAA	alt_5695_new	65	41	59	58	45	49	41	52	38	29
GCTCGCGGGCGTGACT	alt_5695_new	22	14	23	15	12	15	10	6	13	10
TATGACGTACTACTAC	alt_5695_new	52	42	70	56	44	59	54	53	58	53
TTCGCTTTCGTGTATT	alt_5695_new	83	58	134	105	81	90	90	86	93	87
ATGGGCATTCTTGTTT	alt_5695_new	52	40	66	63	55	53	51	36	58	49
CAAATTAGGTCTATAT	alt_5695_new	10	9	7	8	10	2	11	7	4	6
AAATTTGACTTTCACT	alt_5695_new	0	0	0	0	0	0	0	0	0	0
ACTATGCTCTCCGATC	ref_5695_new	0	0	0	0	0	0	0	0	0	0
CCATCGGGGCCCGTCC	alt_5695_new	10	10	9	6	16	9	12	16	8	19
TGATAGTCAACAGTCT	alt_5695_new	18	22	28	30	21	23	11	21	29	29
AACCTTAAAACTTTGA	alt_5695_new	48	42	39	45	35	26	32	28	40	29
TACTCCGTAATGTGCT	alt_5695_new	6	11	6	8	7	7	7	7	5	8
CCGGCGGCCTGAATTT	alt_5695_new	14	7	7	3	7	11	4	11	10	8
GTTTTTTTGAACCTTT	alt_5695_new	13	12	20	26	10	13	11	22	12	20
TCAGCGCGCGCGGTCT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CTGCAGATGCATTGCC	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
GGGTGCTGTATCACTT	alt_3161_upstream	26	43	22	21	22	16	31	18	35	19
CAAATTGTTACGACCA	alt_3161_upstream	36	30	30	19	25	20	31	28	41	20
CCGATGAGCGTGGAGT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGCCTAATGAACA	alt_3161_upstream	73	116	82	54	105	64	106	55	117	63
GTATAAGATGGGAACT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTTTCACACGTCT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
GGTACATACTACGTTT	alt_3161_upstream	1	0	0	0	0	0	0	0	0	1
CCTGTCGGATGTGTGG	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCCTCTCAGGACT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGGTCCGTACCCG	alt_3161_upstream	6	16	2	7	7	1	4	3	12	8
TTACCCGCCAGTGCAT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTAGTCGGCACCA	alt_3161_upstream	15	7	17	11	12	11	14	14	17	14
CGCCAGTAGTGAGTTC	alt_3161_upstream	9	16	19	12	39	11	21	15	28	11
CCATTTGGACATGTCC	alt_3161_upstream	71	92	95	82	106	70	120	65	113	72
TGTCTGCAAGTAATCG	alt_3161_upstream	4	4	2	1	2	5	4	1	3	6
GGCGTTGATCGCCACA	alt_3161_upstream	3	11	6	3	9	5	4	2	8	3
TTTTGTACTCCTGTAA	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGGATTGGCTTCA	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGGTCCCTGATCG	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
GACTTCCAGTAGCCCT	alt_3161_upstream	39	57	45	46	54	22	66	24	55	18
TGCGGAAAAGTCTTAG	alt_3161_upstream	17	26	40	26	42	17	58	31	44	22
TCCTTGGTACAGCAGC	alt_3161_upstream	48	78	75	57	81	45	76	35	103	53
TTTCTGTCAGATTACT	alt_3161_upstream	84	152	110	86	162	90	166	96	160	86
AGTATCCAGCTTAAAC	alt_3161_upstream	51	83	62	69	97	57	97	40	94	54
AAGTAGTACTTTTGAT	alt_3161_upstream	37	69	48	51	56	56	48	36	57	28
TATGCTCGTCCCACAC	alt_3161_upstream	17	18	12	11	8	8	15	12	13	11
CAGCCAGTCATTTTCC	alt_3161_upstream	7	5	3	3	10	4	7	2	12	1
CTGGATAGCGCGTGCT	alt_3161_upstream	105	161	121	86	156	107	177	80	178	89
TAGCCGTTTTAACGAG	alt_3161_upstream	177	330	225	212	309	180	328	147	311	154
GGTATAAGTATTATGG	alt_3161_upstream	14	25	21	24	20	27	28	23	39	15
ATACAGCGTGGAGACT	alt_3161_upstream	32	36	42	23	44	24	49	16	58	22
GGTAACAATTTCACGC	alt_3161_upstream	109	172	136	89	171	86	168	92	177	86
TAGCTTCTAGTTCAGG	alt_3161_upstream	34	55	51	30	58	35	74	40	78	32
TACTTCTTATAACAAG	alt_3161_upstream	12	20	9	6	22	3	12	9	19	13
AATATGCAACTCTCCG	alt_3161_upstream	24	35	29	18	32	26	41	21	33	21
ACTTCCGAAGAGCCAA	alt_3161_upstream	13	18	21	13	25	9	17	18	18	7
AAGGGAGACTTATACT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGCAACAGGTCGC	alt_3161_upstream	42	74	75	45	54	48	83	33	82	42
TGTACAAAAATCATAC	alt_3161_upstream	9	13	7	11	16	9	8	3	17	5
TAGCAACAGTTACACC	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTAGGCCCATTGA	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGATGCTTGCGTT	alt_3161_upstream	161	304	209	155	318	168	316	126	300	161
GCCGCCACATGTGCAG	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCCGTTTTTTTTA	alt_3161_upstream	14	23	8	20	17	10	8	7	11	7
TAAAAGCAACTTTAAC	alt_3161_upstream	31	57	47	51	62	46	61	43	67	33
GGTCGGTGGCTGTCAT	alt_3161_upstream	23	19	28	12	24	16	29	14	26	16
CATAGATGTGTCACGC	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
CATAATCATTACCTTG	alt_3161_upstream	54	129	73	65	147	58	138	48	144	60
TAAGGAACGCCCAGAT	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
AATTGCTCGTTTCGCG	alt_3161_upstream	12	24	14	7	23	13	21	16	15	17
CTCGCGCGATATGTGG	alt_3161_upstream	11	18	22	11	19	12	24	9	21	9
CAGGTACACTCTATCT	alt_3161_upstream	9	33	18	15	26	18	32	15	45	4
CTCCGTTTTTTAAGTA	alt_3161_upstream	5	14	7	5	10	5	8	5	10	9
TGCCTTGCTGAGCAGG	alt_3161_upstream	43	81	54	48	74	51	89	40	58	38
TACTAATTCACACAAA	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TGAAATTACCTTGCCA	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTATTCGTCTTG	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCCTTAAACCGGG	alt_3161_upstream	20	37	28	25	35	38	40	32	54	20
TTTTCAACTTTGAGAG	alt_3161_upstream	11	12	9	13	19	8	17	7	12	6
ATGCCATTATCGCGGC	alt_3161_upstream	2	8	7	3	5	6	16	12	14	3
TTCTTTATTCGTCTTG	alt_3161_upstream	95	134	108	88	140	86	154	95	145	92
ATATCTGTCATTAACT	alt_3161_upstream	36	48	44	26	50	38	54	20	84	25
CTCTTTCTGCTGTTCA	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TAGGATAACTAGCCTC	alt_3161_upstream	39	58	36	44	69	30	56	47	66	42
GGTTGATCAATTGGTT	alt_3161_upstream	29	33	24	17	25	11	28	26	44	29
AGTACCCGCTCTATTC	alt_3161_upstream	10	13	11	6	15	4	10	9	10	8
ATATTTTATATTGCTT	alt_3161_upstream	15	15	10	9	13	11	17	6	16	12
TAAGGAACGACCAGAT	alt_3161_upstream	92	122	113	80	138	95	120	79	143	68
TGATTTTCGCACTCAT	alt_3161_upstream	17	42	19	19	18	20	37	16	24	13
ATCTGCCCATTCCAGG	alt_3161_upstream	34	68	61	45	82	54	81	39	80	25
CCGCAATAGAATATGT	alt_3161_upstream	92	132	106	93	153	101	120	78	139	97
TATCCACGTCGCCCAG	alt_3161_upstream	41	68	54	45	70	44	64	41	75	42
CCTTGAGCGTGCGAAG	alt_3161_upstream	11	27	15	20	23	10	26	21	31	13
TTTGTGTTTCCAAATA	alt_3161_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAGACACATTCAT	alt_3161_upstream	15	29	34	19	39	15	23	16	23	28
CCAGACCCTATTGGCC	alt_3161_upstream	17	45	24	24	47	22	43	26	52	25
AGGGGGTTGTCGATCG	alt_3161_upstream	30	13	14	14	14	20	20	7	17	11
TGTATTAATCACGGTG	ref_1522_upstream	72	129	110	85	143	87	145	94	148	74
CTTTCCAGAAATTCGA	ref_1522_upstream	15	20	12	17	37	13	37	16	36	13
ACGTCCTAGTGCAGTT	alt_1522_upstream	87	144	105	94	150	73	141	78	159	79
TCGGGCTCTAAAGTTC	ref_1522_upstream	6	12	13	11	18	11	14	14	13	15
CCGCTTCTGAGACAGA	ref_1522_upstream	21	52	24	29	31	28	40	29	36	20
ATCTAAGCCATCATAG	ref_1522_upstream	0	10	8	7	13	3	6	6	6	6
TATCCGCAGACTTAGC	ref_1522_upstream	9	15	6	6	13	8	14	6	20	12
TGAGCCTTCACTGAAC	ref_1522_upstream	2	9	9	5	7	4	9	2	11	4
TGCGTTGAGAGTTCTC	ref_1522_upstream	71	79	63	60	110	71	79	52	94	55
CTCCCGTTAGAATACA	ref_1522_upstream	7	24	13	13	25	11	23	8	12	7
TACGCACTCCAAGCCC	ref_1522_upstream	24	56	24	16	59	11	52	31	69	15
TACCTACGGCACCCTT	ref_1522_upstream	18	17	11	20	19	13	34	12	27	16
TGGACGTTTGGCGCGC	ref_1522_upstream	11	13	15	14	8	14	11	4	16	8
GCTCATGCCGTTGTCC	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCGATGTGTTAT	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
CAGTCGCGACATGTGG	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGTTAGTGAGCCA	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGTCTTAACCTTG	ref_1522_upstream	30	42	21	33	39	21	33	8	55	27
CATTAGTAGACCCGGT	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
CTAACTGGATGGCATC	ref_1522_upstream	5	16	11	10	15	9	20	12	11	6
GAGAGTCACGGTATAC	ref_1522_upstream	88	130	144	90	154	97	146	72	173	75
CAACAATGAACAGGGA	ref_1522_upstream	38	57	55	26	54	34	43	39	63	22
ATCTACTGGAACTGCG	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGATTTGGAGGT	ref_1522_upstream	9	10	3	6	11	8	16	5	11	7
TAGTCTACGGTTGGAG	ref_1522_upstream	28	32	30	20	46	23	39	31	58	10
TGCGGATTATCTGAGT	ref_1522_upstream	3	4	3	4	7	4	6	1	5	3
GTTGGAGTGTGGCCGG	ref_1522_upstream	0	0	0	0	1	2	0	1	2	1
GTTTGTCAGCTTGTAG	ref_1522_upstream	4	4	0	2	6	2	5	3	6	4
TTCCAGGAGTGTTTCC	ref_1522_upstream	17	40	22	21	47	12	63	23	52	12
TGGACCACATCCGTAA	ref_1522_upstream	0	3	0	0	1	3	2	3	2	0
TGCTGGAATTGTTGTG	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCCGTCCTTCAAA	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
GCTATGGGGCCTCGAG	ref_1522_upstream	31	51	31	32	54	20	56	26	37	31
GTAGAGGGTAGGGCAG	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
AACCGTGGCAATTGGT	ref_1522_upstream	2	3	1	6	4	1	3	4	4	3
TTATTGTCTCCATGTG	ref_1522_upstream	7	19	15	9	20	9	21	4	11	19
TATACCCGTACCCCCG	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
CAGCAGCCCCATCATC	ref_1522_upstream	7	42	19	14	42	9	50	9	45	9
AAACAATTACCTTGTG	alt_1522_upstream	15	24	27	32	34	26	44	23	36	21
AAATTGTTAGGCTGTG	ref_1522_upstream	10	12	18	8	14	9	13	9	21	9
TTGGTTACAATTTGGG	ref_1522_upstream	7	11	20	7	16	8	13	6	21	5
GACTCGTCAAATGTGC	ref_1522_upstream	4	11	4	11	13	3	11	5	16	6
TTCCCGTTTATTGAGA	ref_1522_upstream	95	108	93	70	122	61	133	67	126	53
CACCGGGCCGTTACAA	ref_1522_upstream	18	42	21	28	39	11	45	17	66	24
ATTTTCTCTAGAACAG	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTGGATGGTGGTG	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGGCACTCTTATC	ref_1522_upstream	23	43	24	25	54	15	58	16	52	22
CCATTAATCCACCCCT	ref_1522_upstream	68	85	81	62	91	55	93	69	120	47
CTCGATGCAACCGTTC	alt_1522_upstream	13	23	20	15	17	15	26	15	24	19
CCAAACTCCATGGACC	alt_1522_upstream	38	56	60	40	51	33	63	42	46	31
TTAGCCCTCTCGTTGT	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGCACCGAGCCGC	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTCTTTGGTATCG	ref_1522_upstream	0	0	0	0	0	0	0	0	0	0
AGGGGAACTCACCATC	ref_1522_upstream	2	4	1	2	6	1	6	3	6	1
CTACGGTTAGCCCATT	ref_1522_upstream	6	15	4	6	17	5	12	4	14	9
TCCCACCTCACATCCC	alt_1522_upstream	108	160	134	111	187	115	197	118	181	93
CTCATGCCCATTTGCT	ref_1522_upstream	38	54	34	39	57	32	57	29	66	27
GTAGAGGCGGAGACAC	alt_1522_upstream	10	17	10	3	11	12	8	8	15	8
CTTATCAACTTTTTGT	ref_1522_upstream	21	42	25	20	33	23	45	28	45	28
TGTGTACTACGTTGCT	ref_298_reverse	40	36	51	45	42	29	52	46	49	48
GATATAGCTGAACAGG	alt_298_reverse	82	114	92	76	78	78	78	74	86	78
GTAGTTTCACTGTAGT	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
TATTAATTAGCGACTG	ref_298_reverse	51	49	38	54	46	43	48	37	64	39
GGACTGGCCCCTAAAA	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTACTTCTGTCCT	ref_298_reverse	4	13	6	2	8	10	12	7	9	5
TATTGAGTTTATTTGC	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
CACTTCTAATACGTGA	ref_298_reverse	5	5	1	0	2	2	4	8	7	4
CTCACTGGATGTCAGC	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
TTAGAACATAGCATGC	ref_298_reverse	25	44	43	45	56	49	40	33	69	32
ATCATTTATCCTTAGG	ref_298_reverse	10	7	6	7	5	7	10	5	13	7
CCTCGACTTGTTTAGG	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
CGATCGTTTGCAGTGC	ref_298_reverse	11	12	17	8	26	8	26	10	13	11
TCCGGACCACTAGCTT	ref_298_reverse	2	1	6	3	6	1	6	1	6	4
GGGTAGTTGTGTCGTG	ref_298_reverse	38	53	47	27	63	30	52	29	42	29
ATGTGAGGTTTTCGTC	ref_298_reverse	7	6	8	2	8	2	6	5	6	3
CAAATACCATGAGTGC	ref_298_reverse	0	0	0	2	0	1	1	0	2	0
GGCGGTCAGATCGATC	ref_298_reverse	55	36	51	45	45	34	56	34	40	42
ATCGCAAGAAACCATG	ref_298_reverse	44	42	64	47	43	59	53	47	46	50
AATGACCATTCTCCCG	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCACGTTGTCCGC	ref_298_reverse	0	1	8	7	4	5	8	3	4	10
AATAGTACTTAAATAT	ref_298_reverse	15	25	41	21	33	25	44	17	24	23
GGAATTGTTATTCTAC	ref_298_reverse	132	203	177	147	159	167	184	152	201	145
TGCGCCGCACCTTCTA	ref_298_reverse	31	53	23	20	45	20	41	37	63	31
TATTTTAAGTTGATTG	ref_298_reverse	3	4	1	2	2	1	3	1	6	0
ACTCTGGAAAGGGCCA	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
GATTATTTGAGAACGG	ref_298_reverse	16	26	38	27	28	26	26	23	31	23
ACTTTGTGATAGCAAA	ref_298_reverse	9	6	5	4	3	4	7	2	12	6
TGGTCTTTTTCATCGT	ref_298_reverse	21	37	42	33	39	41	53	41	46	23
CTTCAAACTCTTGCGC	ref_298_reverse	5	8	5	6	11	11	8	5	8	5
GTTTTCTGATGGCCCT	ref_298_reverse	13	12	7	8	8	13	13	9	11	8
GCCGATGGTTGTTCGC	ref_298_reverse	11	18	17	18	10	7	13	7	37	10
GGTGGGACTTACGGAT	ref_298_reverse	0	0	1	0	0	2	0	1	0	2
ATCATCTTCACTGTGA	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGGCAACGGCAA	ref_298_reverse	47	51	57	54	67	38	57	55	69	36
AATGTATGATAAAATT	ref_298_reverse	16	9	19	16	21	20	19	10	20	14
GGCAAGGCTAGGCTAT	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCCTGGCACCCAT	ref_298_reverse	43	43	67	29	42	45	56	30	44	43
CAGGCATACCACTCGT	ref_298_reverse	49	54	55	65	55	47	59	36	79	45
AAATGCCTTTCAGGCG	ref_298_reverse	119	110	154	126	127	110	150	126	121	108
TTGTTCGCGAACCTCT	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
TTACGGACGTTTATTG	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
AACTCCCGCTTTTGTG	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
CTAACGTGCCTGCGTA	ref_298_reverse	24	14	18	15	15	14	15	26	20	14
TAGTATCTGACTTCGC	ref_298_reverse	2	4	1	5	3	1	12	2	4	6
TGAAAGGGCGCAATGC	ref_298_reverse	64	81	93	72	69	61	70	55	74	68
GATAGCAGCGTCACAT	ref_298_reverse	37	48	49	46	40	45	43	34	39	38
TTCTTTCTATGTGGGT	ref_298_reverse	48	43	72	42	58	45	51	52	56	39
AACATGTGTGAGAGTT	ref_298_reverse	2	2	4	4	7	4	2	1	5	0
CGGTAGCGAAACATTG	ref_298_reverse	33	73	76	65	65	56	71	48	83	35
GAACTGCATTCCTAGA	ref_298_reverse	83	68	95	66	68	63	61	55	77	68
CTTTGAAGAAACTCAT	ref_298_reverse	53	66	64	61	80	57	78	64	83	43
TTCTTTGGACTCTTTT	ref_298_reverse	1	1	3	0	1	1	1	0	2	0
TTAGCCCGGGCCACCA	ref_298_reverse	61	72	72	72	65	63	69	65	83	66
CGGGATTTAGGGGTTC	ref_298_reverse	110	115	106	78	73	86	87	85	84	71
CGAGACCGACGAGTGT	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTTCCCTTGTTAC	ref_298_reverse	26	32	30	17	23	27	23	21	24	22
GTCCTCACCTTAGCGA	ref_298_reverse	30	32	24	25	34	22	33	19	33	31
ATTCATTGTTTATATA	ref_298_reverse	6	6	10	10	13	3	8	6	8	4
TTACGGTGAAGATAAT	ref_298_reverse	19	25	25	18	20	15	28	19	26	19
ACTCGGTCTACCTGCG	ref_298_reverse	2	3	2	0	5	4	4	1	8	0
GTCATAATTGTTTGCA	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
TATATTGTTTCTAACC	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
CGAATCTCCCCCTTGG	ref_298_reverse	21	15	18	11	22	21	17	11	33	7
AGTATTTACATGGGAC	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGTAGTTGCAACC	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
TACCTGTGATTTTACA	ref_298_reverse	33	54	46	37	24	42	53	29	45	28
TGTTCTCGTGGTATCG	ref_298_reverse	59	54	43	56	54	61	72	42	61	52
TTCCAACGTTTGGCGG	ref_298_reverse	4	6	4	3	5	5	1	2	2	6
TATTGACACTAAAGCT	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTTGTTGGCTGCG	ref_298_reverse	27	35	38	17	38	33	38	21	35	24
GATGAACCGAACCTGC	ref_298_reverse	37	51	46	41	42	36	31	42	46	48
ATGTTTTGTATATCAC	ref_298_reverse	49	41	47	30	34	35	46	28	40	41
GTGTATTTTCGCAGTA	ref_298_reverse	2	6	4	2	2	8	2	1	4	4
ACTATCCAATTGGTCA	ref_298_reverse	27	40	33	35	30	25	29	27	31	20
AGGCACCTACTAACAA	ref_298_reverse	13	29	31	14	27	26	30	14	31	17
CTGTTTGAAGCAGGAT	ref_298_reverse	25	48	43	31	38	25	36	24	47	26
TTGTAACAAACTTGTA	ref_298_reverse	4	6	5	2	3	1	5	2	5	1
CGTCTTCTGATATTAC	ref_298_reverse	8	4	8	6	8	7	9	2	5	3
GTTGCGAAATGTTTTA	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
AAGTCTCAGCCCTGCC	ref_298_reverse	9	11	16	10	12	11	6	4	14	13
TCCTACAGTATCGTCG	ref_298_reverse	5	5	9	3	6	5	10	5	17	5
TTCCCTCAGTCCACCT	ref_298_reverse	43	50	52	57	52	44	63	47	75	38
TATTGACCAGAATCGA	ref_298_reverse	39	30	27	35	35	35	39	24	20	27
ATGAGAGTTCCGCCGC	ref_298_reverse	23	20	25	17	23	18	19	17	20	13
CCTTAATTGCATAATC	ref_298_reverse	11	8	10	9	12	4	20	9	13	5
AATGTGCTCATGGGGC	ref_298_reverse	10	18	17	19	20	20	22	15	17	21
GCGTCTTGGACCACTA	ref_298_reverse	12	28	15	13	12	17	22	12	24	15
CATCTTACATGATTAT	ref_298_reverse	36	26	39	35	38	29	26	24	35	32
AATTGCATGCACTTTA	ref_298_reverse	76	88	87	75	79	71	110	64	94	64
CGGGTTAGTATCAGTG	ref_298_reverse	20	22	19	26	11	20	26	10	13	23
TCTTTGTATAGTGCAA	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTATGCGTCCGTT	ref_298_reverse	14	5	5	2	15	4	10	6	13	8
AGCCAGGTTTGTTCGT	ref_298_reverse	14	19	12	15	19	15	17	21	31	12
GGGGGCCGGGAATCAA	ref_298_reverse	13	13	18	10	9	7	12	9	21	6
GTAGGTGCGTGCGGCC	ref_298_reverse	31	34	40	31	36	23	29	20	41	18
AATTTAGTTTCCGTTT	ref_298_reverse	465	415	593	500	402	468	404	483	445	412
CTTCTCCGCCATTTAC	ref_298_reverse	31	25	48	27	20	22	22	26	29	19
ATTACGCCCTATAACT	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGTTTTCTGGTTC	ref_298_reverse	16	17	19	19	17	11	23	13	18	12
GTGTAACTGTGTTAGA	ref_298_reverse	28	34	23	29	35	25	46	23	29	33
CATCAGGATTGCGTTC	ref_298_reverse	3	4	3	4	6	4	7	3	4	3
GCTATGGATGGGATTG	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCTACCCTTGATC	ref_298_reverse	17	12	14	14	19	18	25	16	16	12
CACCAGGGCGACGCAT	ref_298_reverse	30	57	40	43	28	33	76	23	57	20
ACAAGCTCTGACCAGC	ref_298_reverse	45	48	54	31	41	34	43	37	58	25
CCCTATTCACGGCCGG	ref_298_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGACCCTTTACGT	alt_6086_new	44	66	34	43	43	30	66	30	69	33
CTGCAGTTTCACCACT	alt_6086_new	12	11	10	14	20	16	13	7	26	12
ATTGTATTTATGAGCA	alt_6086_new	0	0	0	0	0	0	0	0	0	0
ATGAACAAGAGTCGGA	alt_6086_new	45	82	52	45	87	45	84	50	75	37
ATTTAGAACCGGCACA	alt_6086_new	8	14	10	4	22	7	9	7	14	3
GGACTTAGTCAATGTT	alt_6086_new	9	19	9	5	7	9	12	4	18	6
ATACTCTCGCAATGAT	alt_6086_new	25	41	24	48	38	23	48	22	43	26
GTTATGGGGGCTTTGG	alt_6086_new	9	16	7	9	25	6	14	13	19	7
ATGGCCGTTCATTAAA	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TATAATCTCACGGCCT	alt_6086_new	2	7	5	7	5	0	7	2	3	1
CCGGGTTTGTTTAGTG	alt_6086_new	47	67	51	53	88	48	87	47	117	58
TAATCCATGAAGTTTG	alt_6086_new	71	92	73	50	91	57	93	43	83	64
GTGAACTGTTCTTCGC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
AAATTAATACAAGTCG	alt_6086_new	2	3	1	0	1	1	3	1	2	0
CCCGGCCTGAGCAGTT	alt_6086_new	13	14	16	14	16	13	26	7	21	12
GGGTTCGACCCGCGCT	alt_6086_new	45	75	44	37	52	44	68	34	74	49
CCCCTTGACGGCAGTT	alt_6086_new	32	71	43	37	63	24	80	37	75	32
TCGGGCATTCTGAAGC	alt_6086_new	20	59	38	29	69	28	47	32	58	23
CGTCAGCATCCCGCCT	alt_6086_new	26	72	33	35	81	26	71	16	70	9
TCGGCACGGTAACATG	alt_6086_new	8	19	10	12	25	11	23	17	19	8
CTATCCTGCCATCATA	alt_6086_new	15	24	19	12	26	22	30	13	25	17
TTTAGGCTTGTAAATA	alt_6086_new	77	136	122	113	153	112	146	82	146	94
CGGCACACTAAGCGTC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TTGGTCGGGACCGTAT	alt_6086_new	51	151	47	41	159	43	162	48	171	40
GAGCGTGTACTCGACC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CTGTTCCCGGCATATG	alt_6086_new	0	1	4	2	9	0	5	0	2	2
TCCGATTCGGGTTCGC	alt_6086_new	10	27	14	13	33	13	47	13	53	12
ATGAACGTGCAGTGGC	alt_6086_new	13	17	5	2	13	10	7	2	12	3
TCTGCGCTAACGGTTT	alt_6086_new	44	53	41	38	50	28	60	27	43	31
CGGGGGGGTGTATGTT	alt_6086_new	33	86	48	60	85	58	80	46	84	46
GTCCATCCCTCCTTAT	alt_6086_new	13	42	22	19	42	15	27	22	26	20
CTGAGTAGTAGAAAGC	alt_6086_new	13	11	8	12	18	5	10	9	7	4
TCCTGCTCTCTGCCTC	alt_6086_new	14	37	20	20	47	7	28	8	27	10
GAGCTCGGGGTGTAGA	alt_6086_new	12	18	9	10	16	9	12	6	19	9
GGTTAGCTCATCCATC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CAGTGGTTTGCGTTGT	alt_6086_new	20	35	23	18	31	26	32	14	47	9
CCCGCCTGAGTTTATA	alt_6086_new	77	223	103	97	249	82	268	90	211	69
GGTAAGTCCCTCGTCT	alt_6086_new	68	86	81	49	89	65	82	61	96	54
TCTGGCTTATTTGAAC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
AGTAGCTCGGTAACTC	alt_6086_new	9	12	7	11	21	9	21	13	28	8
GAGGATCCTTTCAAAC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CACTTGAACCCGAAGA	alt_6086_new	10	7	3	9	15	6	6	7	16	1
GACTGTCGCCGTCGCA	alt_6086_new	14	52	31	31	53	20	34	18	34	26
TAACCTGATACAACGA	alt_6086_new	6	11	4	4	7	2	17	4	19	4
CTACAGTACTCCTAAA	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TTGGTAATCTGAGCAT	alt_6086_new	16	20	21	14	21	14	34	15	26	9
CTGGCCCAGCGTCTTC	alt_6086_new	6	5	3	3	1	2	3	6	10	4
ATCAGCTACTCATTAA	alt_6086_new	17	25	31	19	33	21	56	16	44	22
CACACATTGTTGTCGC	alt_6086_new	12	25	8	12	34	11	37	19	28	18
TGATACCTCCCTCCGA	alt_6086_new	14	13	5	4	13	6	17	12	19	3
GGAGTAAGGATTATTG	alt_6086_new	10	25	12	5	15	14	28	11	15	10
CTGATAAGACGTAATG	alt_6086_new	39	63	45	32	69	34	68	34	60	32
CCTCGTTTGATTACCC	alt_6086_new	23	44	35	34	40	21	43	25	45	24
CCATGGGGAATGCTAG	alt_6086_new	13	20	10	6	22	14	18	8	16	9
AGTGCGCTCTTTTTTT	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CTAGGACATCAGGCAG	alt_6086_new	32	37	33	20	46	18	50	23	52	24
GCGAATTTACCGGAGA	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TCCTGACGACCGCGCA	alt_6086_new	21	69	19	26	78	25	69	17	88	20
TGTGATGGCATAGCTA	alt_6086_new	14	21	11	16	23	25	30	13	26	10
CCTTACGACATCCCGC	alt_6086_new	117	174	142	140	214	128	201	112	174	118
GGTTCTCGTTAACCTC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TCCCGAGTCCGTGGTT	alt_6086_new	47	66	50	41	66	42	67	31	70	40
TTGTCCCAGGCTAACC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CCCGTCCGAGTACCTA	alt_6086_new	11	18	11	8	15	9	22	5	16	2
ATTTTCCGTGTCCCGA	alt_6086_new	21	28	30	24	31	16	21	28	37	16
AACAAGGCGCCTGCTA	alt_6086_new	6	13	6	7	15	8	7	4	15	4
TGTGGACCGTGGCTCT	alt_6086_new	15	18	7	10	16	4	26	10	12	5
ATGTTACTCTTAACAC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
GAGGGACGGTATAATG	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TGCGATCGCATCCAAT	alt_6086_new	0	0	0	0	0	0	0	0	0	0
GAGTTCTCATCAATAT	alt_6086_new	27	51	34	34	56	23	41	19	43	26
TGTCTCTCGCCCTTTG	alt_6086_new	3	6	12	9	10	7	5	1	14	6
CGGTTTGTGCCGTATG	alt_6086_new	37	46	41	37	70	19	52	30	52	28
TGTGGGCCTGGGGCTA	alt_6086_new	21	28	15	17	28	26	33	15	41	21
ATGGCCGTACAGTGAA	alt_6086_new	27	41	33	26	42	25	38	22	42	15
CTTTCTGAGCTGCGTT	alt_6086_new	0	0	2	0	1	0	0	0	0	1
CATCCTGTGAGACGTC	alt_6086_new	5	22	11	9	15	5	13	9	21	9
GAATCAGCTTCCTACA	alt_6086_new	7	11	5	4	15	8	8	8	6	1
GCTCGTGTGATTTATA	alt_6086_new	10	15	7	6	19	15	20	13	14	4
CGGCTGCGCGATATTC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
GCGCGATCGTAAACCT	alt_6086_new	12	37	40	25	44	15	39	17	38	17
TGTTATCGCGCATGAC	alt_6086_new	53	47	37	39	62	34	68	36	60	37
TTACGAACTGCCAGTA	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CTAACTAAATCCTCTT	alt_6086_new	29	44	36	32	46	43	39	38	41	26
CGTTAAATTAATTCAC	alt_6086_new	31	47	41	33	56	33	62	34	41	33
CATCGGTATTTACAAT	alt_6086_new	12	27	13	12	23	13	23	8	23	6
GCATCCACAAGTTCAT	alt_6086_new	5	10	3	3	5	0	4	4	3	5
GTTGTCGATCTCGATT	alt_6086_new	22	31	31	15	20	15	26	8	25	15
CGGGATACCGCTGAGT	alt_6086_new	0	0	0	0	0	0	0	0	0	0
GTATACCCAACGGCCG	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TCATAATGTTCAAACA	alt_6086_new	23	38	28	19	35	21	33	23	46	23
CCTATGGGCCAAACCA	alt_6086_new	47	61	63	42	83	45	76	38	81	28
TCCGTCCGACTGCCTA	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CGTAACGTGCTCATGC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TAATGGTACCAAAGAC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TCCAAAAGGTGAAGTC	alt_6086_new	15	32	21	9	35	12	41	14	24	23
AGACCCATGTCGTGAA	alt_6086_new	46	58	50	35	52	48	75	38	66	39
GCTGTGACACACTACA	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TGTATTTGTTTAGCTG	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TGAGTGTGCCTTGCAG	alt_6086_new	3	7	2	1	2	0	1	0	2	0
GCTCTTTCTGGTGCAG	alt_6086_new	56	75	68	67	99	45	87	67	111	49
TCGGGCTTCGATATAA	alt_6086_new	9	14	10	7	20	6	17	15	17	12
TACCTCGCAATTTTGT	alt_6086_new	109	217	136	108	223	112	209	106	235	92
CTGAAAGGGTACTTTT	alt_6086_new	35	54	33	40	49	27	46	34	78	30
CGGACATGATGTATAC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
GGACTGCCAGTAATGG	alt_6086_new	67	75	65	68	82	58	92	45	113	57
CGGTTTCGCCAGAGTG	alt_6086_new	0	0	0	0	0	0	0	0	0	0
CTCCCGGGTCGAATAG	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TTATTTGCTGCGGCTT	alt_6086_new	14	13	13	5	7	7	13	11	7	3
ATCATCGCTTAAACGC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
TGGTACGGGTGGGCGC	alt_6086_new	51	81	77	68	76	58	86	39	99	40
ACATGGCCATCTCTCC	alt_6086_new	0	0	0	0	0	0	0	0	0	0
AGTAGCTACACACAAA	alt_6086_new	10	31	20	7	21	24	18	7	27	15
TCGGTTCGGGTGGAGT	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TCTGAGCTTTTGCTTT	alt_455_reverse	49	38	53	46	36	44	39	44	39	43
GTATGAGTTTGTCCCT	alt_455_reverse	90	55	113	82	48	80	52	75	81	73
TTGACCGTTTAGTATG	alt_455_reverse	48	52	67	79	62	57	61	66	71	65
CCCCAATAATATTATG	alt_455_reverse	177	184	232	189	185	216	163	183	174	205
CCAGCATCTGCAGAGC	alt_455_reverse	19	53	24	31	43	27	46	19	65	17
TTGCGTGCACAATATT	alt_455_reverse	124	102	172	123	80	128	124	132	108	117
ACGGTGTCTACGGCTA	alt_455_reverse	19	10	8	16	5	13	16	9	8	21
GTCCGAGATCTCAGCA	alt_455_reverse	345	237	425	363	280	341	277	337	294	286
CGACGGCGCCCTCTAT	alt_455_reverse	65	43	110	75	52	62	56	77	54	61
GTCACGAGTACGTCTT	alt_455_reverse	119	86	150	111	83	103	93	116	94	124
CGACGCGGTTCTATCC	alt_455_reverse	57	46	72	56	52	64	37	48	31	53
TCTCGTGAGCCCGGAA	alt_455_reverse	20	18	14	26	21	15	17	12	24	16
GTTTGTTCTCTTGTTT	alt_455_reverse	144	129	175	155	131	161	110	155	133	115
GCTCCATTACTGAGTT	alt_455_reverse	13	15	31	15	16	18	12	14	16	15
TCGGTCTTAGTGCCTC	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTCTTGATGCCTT	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCGCGTTGGTCTT	alt_455_reverse	65	57	76	65	52	65	43	64	48	56
TGTGCTGTTCATGAGC	alt_455_reverse	220	161	250	223	161	194	178	198	190	213
TGACGAGTTTGGATCC	alt_455_reverse	88	61	97	101	51	73	39	75	44	91
GGTATTATCTTAGGTG	alt_455_reverse	36	26	34	18	26	30	37	24	40	30
TACCCTAGCACAGGAA	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TTTATCCTCAGGGCGG	alt_455_reverse	15	11	14	7	11	9	12	14	8	17
AGGCGCGTTATATTTA	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
AGCCAGGCACTCTGGT	alt_455_reverse	98	80	134	90	77	101	78	87	84	89
TTCAGGATGTCGTACA	alt_455_reverse	75	59	127	85	50	86	60	102	61	98
TATAGGTCTTGGCTCA	alt_455_reverse	17	7	18	7	5	9	16	16	18	14
TTTTACTTGTCTCCTG	alt_455_reverse	1	0	7	0	2	2	1	1	4	3
TTGGTACGTTCCCTCC	alt_455_reverse	92	169	100	107	182	73	183	87	188	93
CTAAGAGATATGCCTG	alt_455_reverse	69	71	121	85	43	84	77	86	79	89
CGTGTCTCGTAGTCGG	alt_455_reverse	75	48	113	68	51	60	46	51	50	50
TATTAAACCCGTGCAC	alt_455_reverse	100	62	128	103	81	101	61	81	97	83
AATTCAACCCTTTTAG	alt_455_reverse	249	167	280	239	175	263	197	246	182	222
GGCACTAGCCGTTTTT	alt_455_reverse	75	48	83	67	52	52	45	51	47	56
CGGATGTGTGCGAAGA	alt_455_reverse	79	37	64	70	45	70	29	81	46	80
TCATCAGCAATTCCCT	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTATCCTTCCAC	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
GCTTACACGGACTAAC	alt_455_reverse	8	11	16	16	10	11	11	8	11	15
TTGTGGTTTTATCAGA	alt_455_reverse	37	34	61	37	43	46	26	42	28	33
CAAAGTCTAACCGAAC	alt_455_reverse	69	61	79	71	53	56	64	60	53	52
TCCCGTTCTCGGTACG	alt_455_reverse	60	65	86	45	69	66	60	61	60	69
GTTCTATTCGTTGGCA	alt_455_reverse	82	65	100	89	48	70	75	83	71	63
CATCATTGGTACCACC	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
AACAGAACTCCGTAGC	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTCCTCCTCTCCA	alt_455_reverse	56	36	68	45	45	62	64	37	48	53
CCATTAGTTTGGGGCG	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGGGTTACAAAAC	alt_455_reverse	19	13	20	10	16	16	10	12	15	8
TTCCATGTTCTCGGTT	alt_455_reverse	67	57	97	62	54	62	56	71	66	60
AAATCGCTTTTACCCT	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCCTTATTCAGGA	alt_455_reverse	64	63	92	78	39	87	57	46	52	71
AACCGTGTCGTCCAGT	alt_455_reverse	206	169	225	168	154	178	148	185	198	170
AGGGTCATGTGAAGTC	alt_455_reverse	14	14	12	16	8	15	18	15	13	18
GTGTCCGGACATTAAG	alt_455_reverse	107	42	133	125	36	108	41	101	49	99
TCGTTTTTACTCCGTA	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
AGATGGAAGTACTATT	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTTGTAGCAGCTC	alt_455_reverse	31	31	38	25	20	29	21	24	23	23
TATTGGGTTTAACTCA	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTCGAAATGAGT	alt_455_reverse	87	60	95	91	61	83	58	69	63	78
TTCACAATCGTACACT	alt_455_reverse	53	65	45	49	49	46	57	45	55	45
AAAGGCAAAATTCGTC	alt_455_reverse	67	56	60	77	71	69	52	64	47	61
GAGGGCGCTAATCTGT	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
GTATCGCTGCCAGTCG	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTTTAGGCATAGC	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCACAGCTTATGC	alt_455_reverse	0	0	0	0	0	0	0	0	0	0
CGCTCGGGTCACGAAA	alt_455_reverse	52	38	58	52	31	54	34	42	40	42
ACACTGCCTCGTAAGC	alt_455_reverse	62	79	111	93	79	63	64	67	77	85
ACGCTTTGTATATAGT	alt_455_reverse	56	44	67	55	36	57	31	63	43	51
TAGGTCTTGATGCCTC	alt_455_reverse	7	6	10	4	9	6	5	8	7	2
TGTTCGTTCCCCCATG	alt_455_reverse	116	72	150	153	101	98	82	100	85	116
CCATCAGGAAACATGA	alt_455_reverse	17	25	27	22	18	15	11	17	10	23
AACTCCGTGTCACCAG	alt_455_reverse	37	31	36	38	38	45	36	43	30	41
CGCTGATTGGTACGTA	alt_455_reverse	21	16	29	19	17	21	25	19	23	23
TATGTCCTTATGGAGT	ref_2537_RC	35	41	44	41	30	26	36	22	33	20
GGTGGGATCACCTAGA	ref_2537_RC	42	61	60	61	53	55	54	64	47	68
AGTCCCAGTGATGCTC	ref_2537_RC	46	56	76	58	71	63	58	47	56	43
CTACGTAACTCCCGCT	ref_2537_RC	23	74	21	21	65	18	78	23	79	22
ATCTGTCGTTAGACAA	ref_2537_RC	9	16	9	2	7	3	12	9	9	7
CAAAGGGGTTATGCTG	ref_2537_RC	23	27	34	28	33	28	20	26	19	29
GGTTCTGGAAACCTTT	ref_2537_RC	207	232	263	241	262	232	255	221	264	203
TGACTTTCTTCAGCTA	ref_2537_RC	26	29	38	35	23	20	29	35	36	28
GCTCGGCTTAGTTTGT	ref_2537_RC	12	18	10	7	6	8	14	9	12	4
TTATGTTCGTGTTTCG	ref_2537_RC	12	15	24	12	21	19	14	5	24	14
GTTACTACGCTGTCGT	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
GTCTGTCGGGTAATAC	ref_2537_RC	58	64	72	61	72	52	89	50	72	53
ATTCGGGACCCGATCG	ref_2537_RC	19	35	46	32	37	20	33	19	34	22
GGAATCGCCGCCATTA	ref_2537_RC	50	64	88	54	53	61	59	65	47	59
TGAATCGACGAAAGGA	ref_2537_RC	237	253	221	217	220	214	285	177	274	208
GCCGAAGACCTACGCA	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
CCTGGCTGGGTTAGTC	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
GTCAGTGTCCTAAGCA	ref_2537_RC	139	179	152	131	193	133	158	143	145	119
GTAGTCAGCAACCCCT	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
TTGAGGGCGCCGTGCT	ref_2537_RC	478	532	611	532	437	472	518	458	568	452
TATGTTTGTTATTTCC	ref_2537_RC	10	15	21	19	15	21	10	13	15	14
TATGTTAAGAAACTTT	ref_2537_RC	47	51	67	44	45	55	49	45	49	51
CTGCTCCTGATAGTGT	ref_2537_RC	363	370	400	346	398	352	422	328	438	272
CGCTATTGATTCCTGT	ref_2537_RC	38	51	39	34	24	29	41	22	38	28
GATTCTGAGATGACTC	ref_2537_RC	14	15	17	6	17	11	14	7	15	8
TGTCTTTTTTCTCGTG	ref_2537_RC	14	13	16	22	12	11	10	18	11	11
GGGAATATAATCAGAA	ref_2537_RC	33	22	38	36	40	27	37	40	40	24
GGTATCTCCAGCTGGC	ref_2537_RC	20	20	16	16	12	13	16	21	21	11
AGCTCACTTGCCCTTC	ref_2537_RC	61	84	81	56	76	57	71	68	78	82
TCAGGCCCTGTTTCTG	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
CTATCTTCATATTACT	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
GAATGATTTATGTACA	ref_2537_RC	27	18	16	12	20	13	20	25	27	19
GGCGTAACGGTATTAA	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
TAATTTCGTCGGCTTT	ref_2537_RC	48	42	51	41	30	38	39	50	35	46
GCCTGTAAAACCGGGT	ref_2537_RC	35	37	35	39	24	31	34	29	29	22
AAGTTCTATTCTGTAT	ref_2537_RC	47	46	64	56	55	63	57	45	54	45
ACAGAATAGTACTGGA	ref_2537_RC	13	19	26	14	19	10	22	8	22	13
CGCCATATAGTACTCC	ref_2537_RC	1	0	0	0	1	1	1	0	0	0
GTCTAATGACTGGAGG	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
AAGATTGAGTACTTTG	ref_2537_RC	11	15	3	15	12	10	17	9	10	5
GTGTTCATTGTGTATG	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
CCGGTCCGAAGGGTCA	alt_2537_RC	5	15	5	1	16	1	17	1	19	2
CAGAATCGCTCAGCAT	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
TGGCGCTTCTCTCCAC	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
GTGGGGACCAGAGATC	ref_2537_RC	19	18	17	15	24	15	15	12	15	27
CTGTCTTCACACGCGA	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
CCCACCGGTCACGTCA	ref_2537_RC	16	37	22	22	40	20	30	9	58	12
TCATCCAGGGGCCCGG	ref_2537_RC	32	26	48	26	28	28	37	32	35	27
TTTTCTAATTGTATGT	ref_2537_RC	17	3	8	11	12	18	3	14	6	4
AGCACTTACCACAACG	ref_2537_RC	2	11	4	1	14	3	12	3	9	3
TGTGTATGGCCTGATA	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
CTTAGTTTGATCTATC	ref_2537_RC	11	19	12	21	15	11	15	16	14	5
GGAATATATTATCTGA	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
TCCCGTTTATGGAACG	ref_2537_RC	168	181	178	172	153	126	170	185	177	146
TGTTGTAACCTATGCA	ref_2537_RC	59	65	61	87	78	66	95	47	87	51
CGAGCAATAAGTGGGT	ref_2537_RC	70	52	83	66	61	75	77	68	68	73
TGACTTTCTTCACCCG	ref_2537_RC	0	0	0	0	0	0	0	0	0	0
CTAGCCATAGCTCGGT	ref_2537_RC	19	34	17	16	36	17	41	19	46	16
GCGAAGGTTTATTCAC	ref_2537_RC	85	93	97	96	90	80	100	87	85	85
TACTCACAAATTGTTT	ref_2537_RC	15	28	31	35	30	27	28	20	20	23
TGTTGCGCGACTAGCC	ref_2537_RC	15	34	20	27	30	17	25	21	19	24
AGTTTTTGTCCGTCTG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAGTTTCGCCGTT	ref_1252_reverse	3	9	10	8	8	6	5	6	8	5
TAACGCAGTAGACGTA	ref_1252_reverse	26	42	38	31	41	36	42	29	41	30
TTGGGTTATAACCGTG	ref_1252_reverse	22	29	24	23	24	26	16	10	36	18
CTTGCTACCACTCCTA	ref_1252_reverse	5	4	2	5	1	2	3	0	4	2
GTGTCTAAGTTCAGAA	ref_1252_reverse	10	18	24	16	22	10	21	14	23	14
GAGGTAATAGTTTCCC	ref_1252_reverse	12	20	19	20	20	10	12	14	9	20
TCGAGGATCTTCCTTC	ref_1252_reverse	22	13	24	36	17	17	33	13	26	21
GGCGCGGTTACAAGGA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CACCGCCCTTTCTCTC	ref_1252_reverse	22	19	21	30	19	23	10	21	15	17
CACCTGCTTTGTGGAC	ref_1252_reverse	12	15	6	21	18	11	17	7	28	10
AACTCTGACTAAGTAG	ref_1252_reverse	25	29	29	23	25	19	37	18	49	26
AGGCGCGATTCATAAA	ref_1252_reverse	96	125	130	114	99	118	95	104	123	93
TGCTTATATAGATTGC	ref_1252_reverse	29	22	27	28	33	26	22	26	31	21
GCATCTTACGCTATCA	ref_1252_reverse	82	74	87	84	75	69	62	59	74	52
CCATTGTGCATCTCTC	ref_1252_reverse	22	55	41	37	50	26	69	21	51	20
TTTACAAGGTGTGCCA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTGGATTTCCGCAACG	ref_1252_reverse	10	15	16	12	11	16	15	15	17	11
CCATCTAGAACAGTTG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAATTCCAGGAAG	ref_1252_reverse	18	17	17	22	28	20	24	13	24	15
GTCTCGGTGATTCATG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
ACAGATATGTGCACCC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCGGCTGGCTCGT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGCCCGCAGATGT	ref_1252_reverse	27	26	24	17	25	21	23	12	24	19
CCTGCGTTTGCATCTT	ref_1252_reverse	120	192	165	156	160	141	149	121	198	124
ACGAGCACTAAGCGGT	ref_1252_reverse	14	11	13	12	17	11	12	14	22	8
TCCAGTGCCCATCCAC	ref_1252_reverse	5	9	6	3	10	4	11	7	8	6
GTCTAGCATGTATGCA	ref_1252_reverse	53	56	75	41	41	62	52	58	57	55
TTCCTCAATAAAGATT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGTACCTGCATT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCACTTCCCCTTC	ref_1252_reverse	23	88	23	22	77	20	86	24	100	19
TTGACACCCTGCTCCT	ref_1252_reverse	33	75	46	42	44	29	52	28	65	34
GGTGTGTTCATCTCGG	ref_1252_reverse	67	50	81	76	61	59	61	61	53	60
TCTTAACTCCCTGTGC	ref_1252_reverse	5	23	9	10	34	3	26	1	33	4
TTTTGTATAGTGCCAC	ref_1252_reverse	127	165	192	123	135	137	184	132	160	122
CTTAGTTCAGACATAT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGTAGCCAATGAA	ref_1252_reverse	8	9	14	3	7	5	12	11	7	7
ACAAAGCCGAAGTGTT	ref_1252_reverse	14	38	23	18	19	19	28	19	26	19
CGGTTTGTTTCACTTC	ref_1252_reverse	41	74	54	52	56	44	65	29	63	42
CTGTATTGGTCTCCAA	ref_1252_reverse	1	4	4	5	2	6	4	3	6	4
CATTATAAAAAAGACG	ref_1252_reverse	75	63	111	98	71	90	86	83	104	76
ATTGATGCTCTCAAAA	ref_1252_reverse	65	67	79	69	69	52	56	60	66	52
CATAGTTTCACTTTGC	ref_1252_reverse	149	170	198	155	182	176	165	133	192	160
ACGACCCCTTAAGACA	ref_1252_reverse	6	11	2	9	7	7	6	7	10	14
CGGGGTCATAATAGCC	ref_1252_reverse	13	11	20	17	10	18	10	9	12	9
TTCCCAACTTCTTTAA	ref_1252_reverse	19	11	34	20	22	19	23	15	26	21
AGGCACTCGGGACACG	ref_1252_reverse	6	7	9	6	12	7	10	7	18	11
AGTCCGGATGGGCCAG	ref_1252_reverse	53	49	57	54	50	49	60	43	54	46
CCTTTGCCCAAATCCA	ref_1252_reverse	22	14	19	25	20	20	24	13	18	16
GTCACGGAACTTGTGC	ref_1252_reverse	45	83	53	48	79	49	100	34	93	38
CGGCCTGCATGGGAGT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTGTCGGATTTC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCCAGTACTTACA	ref_1252_reverse	19	25	20	18	27	18	30	21	31	18
AGTCATCGTTCGACTC	ref_1252_reverse	22	35	28	21	36	18	33	22	39	15
CGCTATATGAAGTTGC	ref_1252_reverse	21	31	33	40	28	30	19	24	39	34
CAATTCCCGATTATGT	ref_1252_reverse	16	13	37	8	21	21	13	20	39	18
TGAGCGTGGTAACCAG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
AACTGCTCTAGAACAG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CGAAATAGAAACTCTC	ref_1252_reverse	55	53	69	52	54	42	54	54	66	45
TCTGCAGATGTCTGAC	ref_1252_reverse	296	284	390	304	280	297	319	256	345	278
TCATATATTGACGGGC	ref_1252_reverse	80	69	84	73	70	63	56	53	54	63
ACTAGATCGGCTATCC	ref_1252_reverse	46	29	62	35	50	30	55	48	46	32
CCCGTGTCATAGTGAG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TCCATATTTGCTGCGG	ref_1252_reverse	17	19	26	16	22	6	32	15	18	20
GGTCAGACCAAAGAGC	ref_1252_reverse	33	48	28	26	28	35	40	30	42	27
AAGCTCTCGCCAGTGT	ref_1252_reverse	5	8	9	16	12	5	7	9	2	3
GCGAAATAGATGAAGG	ref_1252_reverse	0	1	2	0	4	1	0	1	1	1
GCCCAGACCGGTCATA	ref_1252_reverse	23	20	29	14	24	20	23	27	17	19
TGTTATGTGGTACTAG	ref_1252_reverse	5	4	5	6	6	7	2	4	2	2
CAATGAAGCTAAAGCT	ref_1252_reverse	119	114	122	112	121	88	110	105	113	87
TAGCTCCGCCAGCTAT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CCAAGCGCTTAGGTAT	ref_1252_reverse	9	17	16	15	24	15	12	10	24	8
CTTCTCGACGGCCCCT	ref_1252_reverse	34	34	31	36	31	33	41	45	40	33
CTTGCTAGGTGCCCGT	ref_1252_reverse	78	87	85	63	68	80	74	84	63	67
CTGTCGGCAGTCCGAT	ref_1252_reverse	28	35	28	29	29	23	29	15	30	23
TCTAGCACCTCTCACT	ref_1252_reverse	41	39	53	30	31	39	66	23	64	23
ACATCGTTGCCTATTT	ref_1252_reverse	33	28	36	22	18	22	31	24	30	20
CACCCCCAGCATTTAA	ref_1252_reverse	9	7	9	9	14	8	10	10	7	9
ATAATTGTGCCTCGCT	ref_1252_reverse	5	4	3	6	4	8	13	2	7	9
GCCGCACCTATGCAAT	ref_1252_reverse	33	53	42	35	38	27	38	26	39	27
CACGATACCAGTGCAA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTACTAATCGCTG	ref_1252_reverse	24	32	22	23	25	14	34	26	37	10
ATGGCAGCGATCGGTA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTAATCCGTAGCCTCT	ref_1252_reverse	32	23	34	28	27	24	21	36	20	25
GGTTCTTCAATCACCC	ref_1252_reverse	4	3	4	2	5	2	3	5	4	5
TATCAGATCTGAGCTT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCGCCGGCTCCTT	ref_1252_reverse	2	5	6	6	14	10	3	4	11	11
CTACGTCTACCACGCC	ref_1252_reverse	0	4	0	3	4	0	3	3	0	1
TTCTTCAGCTCGAGGT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCAACACGGAGG	ref_1252_reverse	22	24	16	19	13	12	9	15	24	14
CTTTAGTAATCTTTGG	ref_1252_reverse	51	62	78	64	60	44	66	51	73	37
AGAAGATTCTAACGTA	ref_1252_reverse	26	17	21	22	17	20	20	14	12	27
TTAGTGAGCATCGCAC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TATGCACTATTTTCCC	ref_1252_reverse	207	258	217	178	249	159	229	171	234	172
TATGCATGGATTTTAC	ref_1252_reverse	224	241	273	221	266	208	250	178	263	205
GCACGTCCGGTTCATT	ref_1252_reverse	68	60	86	68	77	69	70	69	82	59
CTGGTTTAGTTCTGTC	ref_1252_reverse	50	66	48	55	58	60	72	43	55	44
TTTCGTTTCTGGGTAA	ref_1252_reverse	55	58	61	45	58	51	59	39	48	52
GCTATAGTAAGCCCGA	ref_1252_reverse	114	141	133	129	134	131	140	119	150	101
TAGCCTTAGTATATCT	ref_1252_reverse	10	13	14	12	10	8	25	18	14	13
TCCCTCCTCTGTTTGG	ref_1252_reverse	42	65	46	36	53	39	59	39	48	32
TTTCCCTGCTGGCGGC	ref_1252_reverse	152	110	150	146	139	131	160	131	148	118
TTCTTTTCGATTGCGG	ref_1252_reverse	28	31	40	33	37	29	29	32	28	28
ACCGCGTGGGTTCTTT	ref_1252_reverse	9	17	18	11	18	13	18	20	22	12
CAGTTTGCTGCTGCAG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GCAGGGAATTCCGTCC	ref_1252_reverse	4	6	5	5	1	2	2	3	4	1
CGCATGTAAGACCTTA	ref_1252_reverse	61	46	66	50	44	60	66	54	64	46
ATGTGCATCACGCAGT	ref_1252_reverse	21	20	22	12	16	18	15	18	27	8
TCCTGGATATTGCGTG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGGTATATTCTAT	ref_1252_reverse	3	1	5	2	2	2	3	4	3	0
ATATTTGGGTTCAGTT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCAGACGAGGCCC	ref_1252_reverse	11	2	5	5	3	5	14	8	2	6
CCGACGTTTATTGTTC	ref_1252_reverse	8	4	9	11	19	7	9	0	19	6
CCGTCCTTGTAATTTA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CATTTTTCTAATGTTC	ref_1252_reverse	23	24	17	21	20	11	22	17	15	18
CAGAGTGTTATGTTCA	ref_1252_reverse	21	19	15	25	24	23	24	16	21	22
ATCAGTTTGCGCAAGG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TATCTATTTACCTTTC	ref_1252_reverse	63	39	83	57	62	61	70	56	81	59
GAAAACACCTTTAATG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCTAGATGTATGT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CCGGACTTTATACGTT	ref_1252_reverse	7	22	18	15	21	15	20	17	21	8
ATGACAAAGTCTGTAC	ref_1252_reverse	40	29	47	32	35	49	39	31	35	39
GCCGACCGTCCGCTCA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGCTCGTGCTATC	ref_1252_reverse	70	66	64	55	73	47	60	58	80	62
TCGCCTAGGTTAAGGA	ref_1252_reverse	22	26	28	25	21	26	32	28	26	21
GCATCATGTGTACCAT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CAAGCATATCCTTGAT	ref_1252_reverse	20	43	35	20	36	21	39	18	43	29
GTTAGCCCTTTCTCCG	ref_1252_reverse	43	40	40	46	44	30	45	29	47	35
AGTTTTGGGTCCGCAT	ref_1252_reverse	1	0	1	0	1	0	0	0	2	1
CCTGTAATTTATTACC	ref_1252_reverse	75	97	105	64	101	88	95	70	111	76
TTCCGGCCGAGTCCAG	ref_1252_reverse	7	9	8	5	6	5	9	8	11	5
TGTGTAACTTTTAGTT	ref_1252_reverse	7	12	11	8	9	5	9	14	10	4
CGGTGTTCCCCGGGAG	ref_1252_reverse	179	159	187	136	163	160	157	148	171	158
TGGCTTGATTCACTTG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CGGATGTGTTTTGTGC	ref_1252_reverse	12	20	13	10	27	5	19	6	21	10
AACACCGCGTCAGTGG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTCATAGACTCAGTTA	ref_1252_reverse	7	3	3	6	5	4	3	5	1	4
TCGTCTTTCCTAGTTG	ref_1252_reverse	8	9	12	8	11	3	10	16	14	5
AATCTTGCTCGACTAC	ref_1252_reverse	1	9	5	4	11	9	6	4	11	3
CTTTTGAAAGCAATGC	ref_1252_reverse	14	25	12	9	11	16	17	8	29	11
GCTTGTTTGTTCTTTT	ref_1252_reverse	8	11	6	11	12	8	10	7	13	3
CCGACCTACTCCTTTA	ref_1252_reverse	32	63	47	37	59	37	37	43	85	34
GCCGGTATCAGGACAT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTATCGGTCTCGCGCA	ref_1252_reverse	8	14	5	4	10	13	14	6	18	3
AGGCCTCGAGATTTTG	ref_1252_reverse	44	78	71	59	57	54	54	53	51	50
GTGTAGAGGAGCCTAT	ref_1252_reverse	27	13	21	12	18	18	17	13	16	11
ATCCACAGTCTTTTAA	ref_1252_reverse	49	87	72	81	96	38	92	58	83	47
GGGGGCGGATCGGCAT	ref_1252_reverse	279	248	334	258	287	266	266	285	288	258
CGTACCCGCGAGATTA	ref_1252_reverse	26	29	34	33	42	18	36	32	39	25
TCGTCCTGTAATTTGG	ref_1252_reverse	46	27	54	36	44	37	44	39	40	43
GCTCATCAATTCCGTT	ref_1252_reverse	78	101	120	99	96	85	99	107	127	90
GTGCGCCAACACAATT	ref_1252_reverse	19	17	22	15	9	22	24	14	18	10
AGTGTCCGGGTGCAGG	ref_1252_reverse	30	24	36	41	33	36	27	36	40	40
TCTTAGCGGGCCGTTG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCGTGGGACGTCC	ref_1252_reverse	33	56	28	28	49	30	43	29	54	31
GTTTTGATTATTTTAG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGATACATAAGTC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CATATTGCAGCTAGTT	ref_1252_reverse	19	28	39	16	17	17	23	22	37	25
ATGTACGCCACTCATA	ref_1252_reverse	290	314	384	313	310	303	350	297	310	281
TAGCGTACTCACTCAT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCATGGATTTTAC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTTATTTTTCCCTCTA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CAATGGTCGGCCCTGC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTTCAGATCTCGTATG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTAGTGCAAAATT	ref_1252_reverse	8	2	3	5	3	4	4	3	4	1
GTCATCTTATCGTAGT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGGGGTTACATTA	ref_1252_reverse	10	7	7	4	8	10	2	6	5	5
TATAGCGGCCTCTAGG	ref_1252_reverse	29	24	22	23	30	23	32	18	14	21
GGTGTCACACGGCCGG	ref_1252_reverse	44	34	53	64	48	64	41	34	41	43
GGGTTAGGACCTTCCG	ref_1252_reverse	1	1	2	0	1	2	3	3	3	1
TAAGTGATTGGGTCCC	ref_1252_reverse	47	39	41	48	57	46	48	34	50	35
AACGGTTCCCGCATGC	ref_1252_reverse	44	43	66	58	55	43	67	54	40	39
GCCTCCCATTAGATCT	ref_1252_reverse	5	12	11	3	10	4	14	7	13	8
CTAGGTTCTTGCCTGG	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCCGTCAATTTAA	ref_1252_reverse	82	64	81	47	79	51	61	61	69	59
GGTCCCCAGTTGATAC	ref_1252_reverse	14	27	21	15	16	10	21	15	26	13
TCGATGTTGTCAGGTC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGGTATGCCCACA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TATCTTAAGCCCTACT	ref_1252_reverse	27	44	39	43	37	47	44	35	52	38
TCATCCGGTTAGCCCA	ref_1252_reverse	32	43	47	29	43	30	37	44	54	37
AGTTCCCGCATTAAGC	ref_1252_reverse	46	59	71	60	59	43	58	52	59	44
GTCCCCAGAAAGAGGT	ref_1252_reverse	14	11	19	11	11	7	5	8	10	5
TTTGCATTTTTAACCT	ref_1252_reverse	24	30	42	31	17	37	27	21	33	17
CGTACAAAGTATGTGT	ref_1252_reverse	67	87	97	74	88	58	99	79	111	58
CATCTCTCTCTACTTC	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGTCTTCAGGCGC	ref_1252_reverse	36	37	35	42	68	33	54	41	47	31
CTTGCTCAGACTCATC	ref_1252_reverse	175	167	235	204	217	196	209	174	227	178
TGATTCCAACGGTGCA	ref_1252_reverse	28	22	26	15	29	20	27	24	24	20
TAGCGGACCTGTGCAA	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
AACTTAACGAGCCTGC	ref_1252_reverse	33	12	31	21	38	25	21	28	22	15
TGTGGCAAAATCAGAG	ref_1252_reverse	16	28	17	13	15	14	20	13	23	14
GTGTATTTTGCACGTA	ref_1252_reverse	8	11	8	11	14	13	5	8	9	10
ATTAGTATTCAATGTT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTAGGTCTTTTT	ref_1252_reverse	17	31	19	22	17	13	20	16	27	21
ACTACTCTTTCTTTTT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAGTTTTCGTCTT	ref_1252_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTTTACATACTTG	ref_1252_reverse	13	17	24	16	25	20	29	14	17	14
ATGACTCTCGTCCTGC	ref_1252_reverse	109	102	148	130	107	106	117	96	117	81
ACCAATATCTTCAAAT	ref_1252_reverse	17	27	30	18	24	27	23	32	30	24
CCTCTAGGTTGAGCTT	ref_1252_reverse	83	80	82	61	70	80	95	82	124	64
ATGACGAATTTTGACT	alt_6047_new	209	303	262	225	309	218	309	172	315	186
TCTTGGGGCGTATATG	alt_6047_new	41	81	65	34	74	50	71	44	53	35
AGTCATCTGACGTTAT	alt_6047_new	0	0	0	0	0	0	0	0	0	0
ACTTGTAACATTCGCA	alt_6047_new	0	0	0	0	0	0	0	0	0	0
GCATTACGGTCGTAGT	alt_6047_new	23	41	24	21	35	29	31	19	39	16
CATATTCCACCGTTGG	alt_6047_new	24	25	26	18	32	20	27	27	44	21
TTTCCGCTATACGAGC	alt_6047_new	15	33	28	25	37	21	32	21	35	20
GTCCCAATCCCGCTGG	alt_6047_new	28	34	36	16	26	23	36	24	31	14
TTCTGTTAAACCCGCT	alt_6047_new	0	0	0	0	0	0	0	0	0	0
CAGTGGGTACGATTTT	alt_6047_new	66	102	76	61	101	68	132	68	100	78
GCCAGCTGGCCAGCCA	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TTCGTTATAATTGATT	alt_6047_new	32	14	60	44	29	41	30	50	37	33
CGTACATTAGGTTGGC	alt_6047_new	28	59	46	18	62	26	51	27	68	34
TGTATCACATCTCTGA	alt_6047_new	21	27	14	13	20	17	26	13	20	21
TTTTTCCCAGTAGGGA	alt_6047_new	21	18	30	14	21	8	44	20	21	14
CCCCCATTCACTTTTC	alt_6047_new	2	18	4	2	22	4	20	3	22	2
TGCACGGGATCCCACT	alt_6047_new	60	92	52	54	99	47	95	50	82	34
TGGTTGCATTCGACCT	alt_6047_new	14	25	16	7	16	9	22	15	25	9
CGTCTACGGTCTATGG	alt_6047_new	7	20	12	7	23	7	16	11	19	10
GAATGAAAGATACCTC	alt_6047_new	0	0	0	0	0	0	0	0	0	0
ACGACTAACACAGGAG	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TGTATCGTCCGCCCAT	alt_6047_new	26	53	29	25	38	32	52	23	51	21
AACCCGGCATAATTGA	alt_6047_new	25	52	25	24	40	22	43	32	65	21
GCTTATACTATTCGAC	alt_6047_new	88	28	137	122	46	123	28	94	31	107
AGTTGTCGGCTCCGGA	alt_6047_new	41	58	31	30	56	35	49	29	52	29
TGCGGCGCGTGTTCTT	alt_6047_new	15	26	20	13	20	15	27	14	21	18
ACATTGCTACTGGAGT	alt_6047_new	10	19	11	7	18	14	24	11	19	10
AGTGGACTACTGTCGC	alt_6047_new	13	14	14	22	24	10	29	9	17	5
GATGGGCTTCAGCGCT	alt_6047_new	0	0	0	0	0	0	0	0	0	0
CGGTCAATCAGGGAAG	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TTGTCCTTAACCTTGT	alt_6047_new	0	0	0	0	0	0	0	0	0	0
GGTAAACTATTTGGCT	alt_6047_new	35	50	54	46	59	38	71	47	60	46
TGCCTTGTTTAATGTC	alt_6047_new	27	52	25	26	37	28	50	27	32	26
ATCCAGCAAAATGTGG	alt_6047_new	0	0	0	0	0	0	0	0	0	0
GGGGCTGATCTCGGAG	alt_6047_new	19	43	28	27	48	24	41	25	55	26
AGGGCTAAGCCCGGAT	alt_6047_new	1	4	2	4	6	4	7	1	6	3
AATTATGTACTCGGGC	alt_6047_new	33	60	33	36	60	35	72	30	54	20
GTTTTACAGTGGTGCT	alt_6047_new	19	33	26	25	29	27	33	22	41	14
CCGTGCTAGGTACTTA	alt_6047_new	5	39	14	28	37	10	39	9	37	14
ACTTTTGAAAAGCTGA	alt_6047_new	47	54	50	33	53	28	80	33	61	36
ACCCTTCCGTTTACTC	alt_6047_new	0	0	0	0	0	0	0	0	0	0
AGTGCTTATGATGGTT	alt_6047_new	13	26	6	13	25	4	25	10	26	5
CCAGGGTCGCCGCGTA	alt_6047_new	16	41	19	19	52	16	53	20	45	7
ATCTCCCGCTTCAGGG	alt_6047_new	18	60	32	14	40	17	64	13	63	24
CGGTCACTGGTGGTTT	alt_6047_new	13	22	7	5	18	11	16	9	16	9
GGGTATAACCTCAAGC	alt_6047_new	19	31	30	21	40	21	36	13	35	26
AGAGTGGTCGGTTTAA	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TATAGCACAAGTTTTC	alt_6047_new	9	20	14	9	6	4	13	12	16	11
AGAGCACCCGGCCGGT	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TAGAACTTTGGCACGG	alt_6047_new	3	2	0	1	1	0	2	1	0	1
ATCGACTCGTTCCAGG	alt_6047_new	0	0	0	0	0	0	0	0	0	0
ATGTCCCTAGGAAATT	alt_6047_new	0	0	0	0	0	0	0	0	0	0
GCATTGAACAATCCGG	alt_6047_new	15	29	28	21	34	21	38	21	33	25
ATAGGGCGCTAGCCGC	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TAAGTTTTGAGCCCAG	alt_6047_new	0	0	0	0	0	0	0	0	0	0
ACTCTACTTTTACCGA	alt_6047_new	3	13	11	9	10	5	16	7	16	9
TACGGTCAGGTTATTT	alt_6047_new	61	105	67	66	100	59	126	55	110	54
TCAGGACATAGTCACA	alt_6047_new	0	8	2	2	5	4	3	3	5	3
ACGAATTTTTCTGAAA	alt_6047_new	11	22	21	10	30	16	15	18	25	13
ACAGTCTTTTCTCCTC	alt_6047_new	149	189	171	155	226	148	203	95	221	129
TCCGTATGAATCGTAT	alt_6047_new	2	4	3	5	5	4	7	2	4	2
TAGAATCACCTCCTAT	alt_6047_new	32	51	58	38	60	44	64	32	64	31
GGACATTCGTTTGGAG	alt_6047_new	33	77	57	44	85	36	102	29	75	29
TGTACTGTTCGCCAGA	alt_6047_new	56	105	65	64	118	68	111	68	130	48
ACGAAATTAGTCACTC	alt_6047_new	28	58	40	33	45	22	64	31	65	25
TAGCGGTCATTTATTG	alt_6047_new	16	31	20	22	37	28	41	14	37	15
ATTAACAGCAGCCAGT	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TTGTTAATGCTCTCCG	alt_6047_new	44	107	86	66	90	59	94	49	123	40
TTTATCTATCTAGTGC	alt_6047_new	25	27	22	28	35	22	30	26	39	19
TTGGCCCATCTGCGAA	alt_6047_new	14	13	6	6	19	8	20	14	17	11
CTTATCATTGATTATG	alt_6047_new	0	6	2	4	4	4	8	4	11	5
TTAATAGTGAATATTT	alt_6047_new	42	66	55	48	90	55	83	44	74	49
CCGTTTGGGGTCTGTT	alt_6047_new	20	92	21	19	91	19	75	11	74	15
GATTTAGCTGTCTACT	alt_6047_new	29	58	40	47	51	36	56	28	58	24
CGTGGTTTGATAACGA	alt_6047_new	3	12	4	4	12	7	12	6	14	10
TCACATTACGTTACTG	alt_6047_new	0	0	0	0	0	0	0	0	0	0
ACCATGCCGATGATGT	alt_6047_new	6	12	11	7	11	8	8	6	20	9
AAATGGCAACTACGAG	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TGAACTTACGCGTTTG	alt_6047_new	75	144	72	93	164	69	154	70	133	49
ATAAGGTCCACTCATA	alt_6047_new	0	0	0	0	0	0	0	0	0	0
GGTATGAAGGCTCAGG	alt_6047_new	3	1	9	1	10	8	9	5	8	4
TCGGGAATCCAAGTCC	alt_6047_new	6	13	12	15	12	6	14	15	24	12
CCTGCGTTTGCCTCTG	alt_6047_new	30	61	38	31	65	37	69	26	77	28
AATTCTAGATGTTTAA	alt_6047_new	0	0	0	0	0	0	0	0	0	0
TGAGTTGTGTTCGACG	ref_2817_RC	34	44	48	45	45	27	31	38	66	32
TTTTAGAGTCGGATTT	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
TCAACTCTTACTCGTC	ref_2817_RC	25	22	20	26	25	15	40	12	38	15
CGTGTTGGTTGCTACT	ref_2817_RC	74	69	83	78	94	58	90	56	99	51
CAGACCCTCTACAGGG	ref_2817_RC	12	19	15	14	32	8	28	11	22	6
TGAGCATATTATTTGA	ref_2817_RC	14	23	16	10	22	14	21	13	18	10
TACGCATGGACGCCGG	ref_2817_RC	8	5	5	6	10	7	6	7	6	9
GCAGGAGTAGCTACGG	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
CGGTAACATACAGGGA	ref_2817_RC	80	120	92	79	98	85	114	76	106	75
ACTTTCGTCGCATAGG	ref_2817_RC	43	68	52	31	58	21	69	37	60	25
TGGAGTTGTTAATATA	ref_2817_RC	10	20	6	9	11	6	20	11	21	7
CTACCGGTGTCGGGAT	ref_2817_RC	32	51	48	47	57	34	63	36	72	28
AGCATCCCTCACGCTG	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
GAGGCCTTAGGTTTTC	ref_2817_RC	7	11	13	11	15	14	6	8	10	10
GCAAAGCAGCTTCTGA	ref_2817_RC	9	5	9	12	13	5	13	9	14	8
ACTTCACATAATTGTT	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
CGTGAAGACTTTGCTC	ref_2817_RC	14	20	16	12	21	12	20	13	31	11
TCGACCTTCTTAATTC	ref_2817_RC	12	40	25	12	35	20	28	19	30	11
GGTAATTCACAATTAA	ref_2817_RC	47	65	51	38	53	45	47	45	69	37
ATAGCACTTGACAGTG	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGTAAGTTTCTT	ref_2817_RC	8	1	10	5	6	1	9	5	15	2
TATAGCATGCTATGTA	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
TCGTTACATTCTTTTG	ref_2817_RC	32	66	40	49	64	39	56	40	66	36
GTTCAAAACTCGCGCC	ref_2817_RC	13	30	16	8	32	10	25	14	21	10
TCAAACACTTATCGGT	ref_2817_RC	27	57	41	19	60	35	56	17	51	35
CAACAGGCTACGGATG	ref_2817_RC	2	12	2	6	12	4	6	4	13	3
GGGTAAGAATCAGCTT	ref_2817_RC	11	25	17	14	22	22	36	8	30	21
GTGGTTTGGATTTACG	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
TATTATTATGTTAAAG	ref_2817_RC	33	52	41	40	36	30	42	34	56	24
TTCGTACGTTTCTGTG	ref_2817_RC	74	127	136	95	144	119	145	110	143	99
AGGTTTATCAGTTCCC	ref_2817_RC	5	10	7	0	8	3	4	4	15	9
GTTCTTTAGGCCTTTC	ref_2817_RC	139	230	162	111	227	128	231	139	222	137
CGCCCTTCGGTTAACA	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
CATCCACGGTTTCGTC	ref_2817_RC	9	15	12	15	16	8	14	8	21	4
TCTATGGTCCGCCTGT	ref_2817_RC	3	6	5	4	5	3	5	2	3	6
TTCAGATTATGGTTCT	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
AGAGCGCTATCCTGTG	ref_2817_RC	16	24	34	22	35	18	37	22	36	21
GCTGGCGATTTAACAA	ref_2817_RC	22	46	35	24	54	29	36	27	45	17
CAAGTTTAGGTTGTCC	ref_2817_RC	10	19	9	13	20	12	18	12	16	23
TCGTGCCTCTACATCG	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
GGTCTGAATTTGCTCT	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
GCCGCTTTTTGTTTAT	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
ACGTTCGATTCTAGAA	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
AACTCTTAATATTTTT	ref_2817_RC	8	11	9	15	5	14	6	11	6	11
TAAACTCTTGTAATGT	ref_2817_RC	42	87	67	47	76	34	94	61	69	43
TCGACTAACCAGGCTC	ref_2817_RC	30	35	21	21	44	16	40	19	32	11
TTTTAGAGTCGGATTG	ref_2817_RC	132	260	169	123	238	161	276	162	249	129
CCGGCCCGACGTGTTT	ref_2817_RC	10	62	15	23	83	21	60	16	93	14
CTCAACTGAATCGTTG	ref_2817_RC	59	68	47	49	69	43	67	37	91	59
CCTCCTGGTAAACGCG	ref_2817_RC	22	26	44	22	52	28	25	26	31	19
AAAACACATGCGTCGA	ref_2817_RC	11	11	3	11	21	12	17	7	19	4
ATCCTTTAGGAAGTCT	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTGTATAATACT	ref_2817_RC	69	151	69	89	146	77	150	68	140	59
CGCTGTCAATAGTCAA	ref_2817_RC	10	12	16	6	7	7	16	8	8	9
GGCAGCTAGGCGTCTC	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
TGTATTAGTTCGGCTG	ref_2817_RC	16	35	24	8	32	14	29	16	28	15
CATAGCATTGATTCTG	ref_2817_RC	28	39	34	26	33	14	25	30	32	33
TTCTTATTTGACTTAT	ref_2817_RC	22	40	34	31	36	16	40	25	41	22
TCCCAATTAGTGCAAG	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
TTAACAGTGTTAAACC	ref_2817_RC	4	11	0	8	7	2	6	1	6	4
TATAATGCTAGGTATT	ref_2817_RC	20	28	20	21	31	23	39	19	37	23
AGCATTTTTGCTCGGA	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
GCGCTTGTGCTATCCG	ref_2817_RC	20	26	19	11	40	19	36	28	27	18
GGCGGCAGTTTGAAAG	ref_2817_RC	9	7	9	6	4	5	12	9	8	8
TCGTGCCTCTCGATCG	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
CTTACGGCGCTTGCAC	ref_2817_RC	40	60	39	32	47	26	57	26	70	31
TTGCTGTTTTGACTGC	ref_2817_RC	11	9	12	10	13	5	17	6	14	5
ATTTGGTTCGTTTGAA	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
TACGCCCTCACGTGGA	ref_2817_RC	4	10	3	7	10	6	8	9	16	2
AGTGCCGTATACCTAG	ref_2817_RC	4	4	1	5	6	0	6	1	6	1
ATTTTCGTGAGTTGGC	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
TGGCGTCTCAAGTTGT	ref_2817_RC	0	0	0	0	0	0	0	0	0	0
CCATATACTGCTAAAA	ref_6106_new	129	75	131	123	83	102	81	100	69	105
TTTTAGAACGTCGCCG	ref_6106_new	20	17	31	22	15	15	16	18	17	18
CGAGGAGGTAACTGGA	ref_6106_new	14	15	12	29	18	17	8	16	8	18
GCTGATTAGATCCACC	ref_6106_new	129	64	144	163	60	138	69	151	83	111
AGTAGATGGATTCGTC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TTTCTGCCCAGAAGCA	ref_6106_new	21	18	46	45	19	23	17	21	32	31
CTACCGCACGGGCCTT	ref_6106_new	15	16	17	9	10	15	17	10	18	10
GTATATACATTCGGTT	ref_6106_new	46	40	68	52	39	48	38	50	35	38
ATTAGCGATATATCCG	ref_6106_new	94	62	126	116	66	105	66	104	60	103
AATTTAACACATCTAG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
AACGCATAGCGCGTTG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ATGCCAGCCTAGACGC	ref_6106_new	41	26	51	39	26	36	31	38	26	20
GATACTTGGTGCGGTC	ref_6106_new	79	50	121	109	59	76	58	96	51	66
TAGGGCCCCATTAGTC	ref_6106_new	25	16	20	23	14	22	16	14	15	20
TTAGTTTAATTTCTTT	ref_6106_new	53	54	106	67	50	62	43	69	41	63
GCGACCTACCTTAAAC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TGCCCTATCTCCCGGG	ref_6106_new	22	14	33	22	19	24	20	28	10	22
CATGGGTTACTTCGAG	ref_6106_new	8	3	8	9	2	3	3	4	1	2
TGCATAGTCGTTGGCA	alt_6106_new	205	143	243	214	137	174	111	185	141	144
ATATATTAGTCCTATA	ref_6106_new	11	8	22	27	7	15	17	23	17	15
TGGCGTTCTAGTGAAA	ref_6106_new	98	68	152	117	81	116	76	102	72	78
TTAGTCAGCGTTAGTA	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CCAACAGTGCGCATTA	ref_6106_new	3	10	10	10	4	6	10	11	12	7
TAGGGTCTCGTTAGGC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
AATGCTGCGATTTTAA	ref_6106_new	157	96	178	125	92	124	109	140	88	121
ATTGTTATGGTCGATG	ref_6106_new	50	31	70	51	40	39	45	57	36	48
AGTGACAACCGTAGAC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GGGTTGGAGGAGACCA	ref_6106_new	43	27	47	35	13	27	29	43	24	33
ACTCGTTCCAACATCC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TTAGATTATGCCAAGC	ref_6106_new	121	63	172	143	77	92	83	95	101	97
TCACTTTTTCTGAGTA	ref_6106_new	69	38	66	59	32	62	52	51	33	73
TACCTGCTGATGGCGG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CCTTTGGAATCATACA	ref_6106_new	34	25	37	41	27	40	38	23	28	34
TTGGTCTCACACTGTA	ref_6106_new	45	25	40	36	14	34	23	50	30	31
GGTTTGCGCAGTCAGT	ref_6106_new	64	43	101	84	58	76	44	94	72	63
CTTCATGACACAACCG	ref_6106_new	31	23	44	33	22	29	18	32	23	26
GACAGCACGATCTCGT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GGCGCTCGCGGTATCT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ACCGATTCGGCGCGCT	alt_6106_new	22	13	25	30	13	25	11	23	12	21
GCACCGTTGGATTGAT	ref_6106_new	148	95	168	144	98	151	104	142	107	148
AAACTCGATTCGTTGA	ref_6106_new	1	2	3	0	0	0	0	1	1	2
TTTGCCGGCCGCGTAC	ref_6106_new	70	66	89	77	67	73	65	84	92	82
CGAACTAAAATGCGGA	ref_6106_new	83	61	109	125	68	100	78	107	59	94
GAAGGAGCTTTGCTGG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
CCGTGCTAAGCTTTAT	ref_6106_new	34	29	36	29	34	25	26	37	34	22
CGAGTGCACCTAATTT	ref_6106_new	30	19	32	21	16	30	19	18	24	20
TCGAGTCGCACTCTTT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ATGCAGATAGCCTGGT	ref_6106_new	46	32	55	37	31	55	38	58	33	33
GTACCTGACGTAGAAG	ref_6106_new	25	14	26	23	8	14	19	18	11	20
CACAATACCCACGTAC	ref_6106_new	62	59	62	70	58	38	55	65	55	50
TGACTCTCAACTGCAA	ref_6106_new	30	18	39	40	16	23	24	30	24	27
GTCTTGAGATTTCTAG	ref_6106_new	84	52	110	99	45	75	64	64	63	70
AAGGTGTCGACGTTAC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TTACTTTCTAATTCTA	ref_6106_new	86	57	107	88	43	74	51	73	63	79
CGTTAAGACTCCGGTT	ref_6106_new	9	4	6	11	7	7	6	9	3	10
ATAGTAAACATTTACT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CAGCATCGTATTTAGT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GTCATAACTCTTCTGG	ref_6106_new	37	23	45	47	13	26	24	35	22	22
GTAACGCATTAACTCT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GTCCTACGGCCTTCCT	ref_6106_new	32	24	28	28	17	32	24	29	16	27
TTTTTGCGCGGAGTGT	ref_6106_new	39	34	59	49	29	40	24	52	34	26
ATTTAGTTAGTTAATA	ref_6106_new	97	72	127	98	73	108	66	91	61	88
GTTTTAGGGTATTTCG	ref_6106_new	58	39	76	58	37	56	33	38	41	49
TTTTCGAAATTGGGAA	ref_6106_new	168	120	200	158	106	189	104	150	106	144
GCTAAGCGACAGTCAC	ref_6106_new	26	15	40	35	17	28	14	24	13	24
CCTCATCCCCGGACTC	ref_6106_new	50	15	36	33	33	42	23	35	34	35
TCTGGCCTAAGGCCAT	ref_6106_new	13	15	20	22	12	15	5	15	6	11
CATTTATGTAATCATG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CCTAAGATTGCGTTTA	ref_6106_new	12	13	24	23	12	14	26	21	18	20
CAAGCCTACAAATACC	ref_6106_new	8	26	26	16	21	10	18	15	22	11
CGTAATGCCCGTAAGC	ref_6106_new	232	155	270	252	158	233	154	226	178	218
GCTCATGTCAGTGACT	ref_6106_new	5	5	5	7	6	6	8	4	2	1
ACAGACAATCGCGGGG	ref_6106_new	135	57	144	106	69	100	73	121	75	112
GTAGGCTGAATCAGAC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ACAAGTGTGAGACAGG	alt_6106_new	51	25	65	46	19	32	40	34	28	43
TACTCGTTGTAGCTAA	ref_6106_new	53	36	77	57	35	47	43	38	38	47
CCGGGTCCTTTCACTT	ref_6106_new	31	25	38	34	13	24	25	33	18	31
GTCTCCGTTTTAGGTG	alt_6106_new	144	112	149	130	94	130	83	116	112	108
TACCATAAAAGATCTG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CCGCTAGGAGTTGTTC	ref_6106_new	9	19	11	16	17	12	24	18	13	4
TCACCGTCGCCGCCTA	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CCCGGGTTTCCACAAA	ref_6106_new	30	22	40	36	24	29	27	30	20	35
GGCTTTTCCTTGTACA	ref_6106_new	30	16	42	30	36	24	24	48	33	28
CTTATGCTACTCCAGC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CTCAGAGTATCGTTTC	ref_6106_new	86	50	88	73	34	80	60	70	56	61
TAGGAATGGGTTCCGA	ref_6106_new	71	47	107	92	50	96	68	99	58	74
CATACAATTACATCTC	ref_6106_new	74	47	82	84	70	56	36	66	38	62
TTTTCTGTGATGCGAA	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TGTTGACAGCGGCTAA	ref_6106_new	42	26	64	32	23	39	47	51	31	47
TCCAAGCGGCCCACGC	ref_6106_new	3	2	0	4	3	1	4	2	4	3
GCCGGAACTAGCCGGT	ref_6106_new	19	18	41	36	14	43	19	24	21	31
ACCGAATCGTTGTTGC	ref_6106_new	12	8	9	13	4	17	5	9	13	6
AGACCCAGACCCCATG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ATGACTGGTGCCGTCT	ref_6106_new	155	76	161	145	95	137	81	130	94	120
AACCTGTACGTTTGGG	ref_6106_new	30	10	34	27	15	27	13	23	19	15
CATTAGCGCCACTTTA	ref_6106_new	28	16	21	20	17	16	20	16	16	16
GTAAAGGGGCCAGGTC	ref_6106_new	37	17	39	34	12	27	27	26	27	34
ACTATCATTGGATTAG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CTTGCGGCATCCGCAG	ref_6106_new	14	16	17	14	12	15	14	10	3	15
TTTCTGCTATGTGCGC	ref_6106_new	8	8	16	19	5	13	8	12	7	15
TGCTAACAGTCGTCCA	ref_6106_new	9	4	8	9	9	5	3	4	6	5
GTCTCATCGACCTTGT	ref_6106_new	66	43	82	76	41	61	41	56	37	58
CTTAGCCTTCCCCCAG	ref_6106_new	42	17	54	49	17	40	20	43	33	30
GATTCCGAGTTTCAGA	ref_6106_new	50	46	71	86	36	62	28	68	26	52
GAGCCTATGGAGTATA	ref_6106_new	31	20	27	26	24	29	21	26	20	22
ATTCGCAATTGGGTTC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TCACGAATACTACATA	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TGTAATACTTACCCGA	ref_6106_new	1	15	3	2	11	3	14	7	9	1
TGTGGTATACCCGTAA	ref_6106_new	23	21	26	26	15	23	19	17	16	29
TAGTGCATTTTCGACT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CGTGATAGAATTGGCC	ref_6106_new	27	23	33	33	19	30	19	26	21	31
ATTCATGCAGGTATCT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TGATACTCTTCTGGGA	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ACTTCTCGTGTAAGAG	ref_6106_new	25	37	22	16	28	17	39	19	22	11
AGGACATTCTAGGCGG	ref_6106_new	2	3	2	1	3	1	0	3	0	0
GGTTTGCTGCTCCCGT	ref_6106_new	29	20	40	37	21	32	22	22	18	27
GAGGCAGAGTACGCGT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GCCGCTTTGTCTGTAT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CTGTCCCTGTTGGCTG	ref_6106_new	4	1	11	10	7	8	9	6	9	13
AATTCTGCGTTGGGTT	ref_6106_new	0	0	0	0	0	0	0	0	0	0
CCTGGTGAATGCCGGC	ref_6106_new	84	59	83	84	57	89	69	71	51	77
CGAATGTAATGTTATA	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GGGGCGGGAAGCGGTT	ref_6106_new	8	2	10	9	7	11	7	11	7	4
TGTCTTCACCTCTCCG	ref_6106_new	89	45	126	81	63	93	43	75	55	81
CGGCTCACGGAACGTT	ref_6106_new	59	36	83	57	46	52	44	56	45	69
GCGTAGGGCCTTTACC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GCATATGTACTGAGTC	ref_6106_new	70	49	101	77	49	79	54	76	51	75
CGGTCCGTATTGGATG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TTGCAAGCCCCCTCTC	ref_6106_new	99	64	161	142	58	111	78	113	97	120
TTTCTTCTAATCAGAT	ref_6106_new	85	50	149	110	63	88	50	83	65	75
TGGGCGGCCTCGCATG	ref_6106_new	20	14	24	21	19	20	17	14	11	18
TATAGCGCAGCCAGGA	ref_6106_new	28	15	23	24	14	21	14	22	17	13
GTTACTCGGATCGTTT	ref_6106_new	86	51	87	78	49	75	46	67	58	67
ACTCCATGTTATCCGA	ref_6106_new	12	9	18	15	5	10	4	8	15	4
AATAGTTAGATTTTTT	ref_6106_new	23	15	47	37	23	12	19	27	17	35
TATGTCCGCAGTTTTA	ref_6106_new	38	19	39	34	25	29	23	34	28	22
GTTATCAACTGGAATC	ref_6106_new	47	24	58	59	38	67	34	48	47	55
AGGGGCGGCCATTATC	ref_6106_new	69	43	95	80	36	87	35	73	32	61
GTACTCATGGCGAGTA	ref_6106_new	46	41	64	54	43	85	47	66	26	57
AGCTGGCCACATTGAT	ref_6106_new	65	30	65	73	40	59	30	55	38	55
TACGAGGTCCCACTTC	ref_6106_new	7	7	12	13	7	7	14	10	4	6
CGGCTCGTGACTAGCG	ref_6106_new	112	71	118	108	53	92	77	94	61	109
TATTGGGTACAGACCC	ref_6106_new	61	43	66	58	35	51	41	49	36	47
TTATCCACTTATCTCC	ref_6106_new	7	7	8	9	2	7	3	7	13	12
GTCTGGCGAAAACTTT	ref_6106_new	22	10	13	7	3	15	6	6	6	10
AGCCGTAGCTTATGGG	ref_6106_new	8	4	3	8	0	8	4	3	6	7
TTTACCATGGCCTCGG	ref_6106_new	0	0	0	0	0	0	0	0	0	0
TTAATGGGACCTCATT	ref_6106_new	6	3	5	5	3	5	7	5	2	10
TATGGATGACCGTTGA	ref_6106_new	46	23	55	53	23	60	24	30	30	46
CCGTGTTCCCACTATC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ACTACGTTGTTAGGTC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
ACTAGAGGTGCAGGGC	ref_6106_new	0	0	0	0	0	0	0	0	0	0
GGACTATCTCCCCGAA	ref_6106_new	2	22	7	2	11	1	23	3	24	3
GGTTGGCTTTAGCCCT	alt_5915_new	28	41	45	41	65	37	63	18	67	35
TCAGAAATACGTTGAC	alt_5915_new	4	7	5	11	5	1	11	10	7	5
GTCTGGTGTATTATAC	alt_5915_new	0	0	0	0	0	0	0	0	0	0
ATACGTTAAGTAATTG	alt_5915_new	21	24	22	31	30	20	40	9	28	12
GTTTCCGAGCATTGTA	alt_5915_new	30	37	39	26	56	23	46	22	62	19
TATATTGTTATTTCTT	alt_5915_new	29	31	33	19	43	29	52	28	50	25
CTAAGCCTAGCATCGA	alt_5915_new	5	5	4	4	12	7	5	3	7	4
TTCTTGTTGCGGCGCA	alt_5915_new	7	24	9	8	22	4	17	9	16	10
GATTTCCAGCAATTTT	alt_5915_new	0	0	0	0	0	0	0	0	0	0
ATTCTCTTGAACCATG	alt_5915_new	20	58	28	30	47	21	56	27	73	15
ATGTGTGCCAGGTTCT	alt_5915_new	16	19	21	9	17	7	22	3	17	3
GCTCATCAGCGGACGC	alt_5915_new	0	0	0	0	0	0	0	0	0	0
GTAAGTTATTATAAGT	alt_5915_new	23	45	52	34	51	26	52	23	45	20
GAAGTATGGGACTATT	alt_5915_new	8	10	10	8	16	7	7	7	4	15
CATTTCACGATTTCAT	alt_5915_new	21	26	24	20	39	18	23	33	38	23
CAAGTTAGGGAAAGGA	alt_5915_new	16	22	17	9	24	15	25	15	29	13
CGGGCGTGGGTATGGG	alt_5915_new	7	26	26	10	23	11	21	19	19	9
GCCGTGACGCGAGCAG	alt_5915_new	23	18	14	11	16	8	14	13	29	8
TGTACAGCATTTGTAG	ref_5915_new	31	44	38	39	66	48	51	23	67	27
TCTGCATTGTCGGCTG	alt_5915_new	20	46	31	18	59	23	63	20	53	17
CACTATCGAGGGGTTC	alt_5915_new	40	61	48	31	60	46	56	35	67	26
CCGCCCGTGTATCTAG	alt_5915_new	0	0	0	0	0	0	0	0	0	0
GACTTACGTTGGACTA	alt_5915_new	7	29	22	8	16	17	23	8	24	13
GTCGTTTTCCCATTGG	alt_5915_new	1	5	1	2	4	2	5	1	9	2
ACGATGAGATAGAGCT	alt_5915_new	0	0	0	0	0	0	0	0	0	0
GTGATCCAATTATATC	alt_5915_new	45	56	54	49	67	41	55	39	68	51
GCACAGTCTCGATGTA	alt_5915_new	0	0	0	0	0	0	0	0	0	0
TTCGCGATCAAAAGCA	alt_5915_new	50	65	57	64	70	57	74	48	98	63
GAAACGTGGTATTCTA	alt_5915_new	21	45	34	20	39	20	35	21	42	20
TGTTCCTACATACGGG	alt_5915_new	11	22	15	12	32	14	23	7	26	14
CTTAAGCGGCGTGGCA	alt_5915_new	0	0	0	0	0	0	0	0	0	0
TGGATTATTTGCATCG	alt_5915_new	0	0	0	0	0	0	0	0	0	0
TTCTTATTGCATTCTT	alt_5915_new	26	28	24	32	29	20	30	27	37	26
TCTCAGCAGTATTGCG	alt_5915_new	3	4	2	3	7	1	1	1	1	2
TAGCTATACGCGATAT	alt_5915_new	37	71	41	43	51	31	60	31	69	40
ATCGGCTAGAAGATTT	alt_5915_new	37	52	41	40	48	47	58	33	81	41
CTAGGCCCTCGCTTGA	alt_5915_new	0	0	0	0	0	0	0	0	0	0
ATCCTGTTTTGTTTCG	alt_5915_new	51	102	103	59	103	77	99	63	106	48
GTATCCGCTACAGCCA	alt_5915_new	0	0	0	0	0	0	0	0	0	0
AATCATTTAGCCCTGG	alt_5915_new	0	0	0	0	0	0	0	0	0	0
CAGACGCGAAGTGATG	alt_5915_new	0	0	0	0	0	0	0	0	0	0
GCGGTTGTGTACCGTA	alt_5915_new	1	2	0	0	0	0	2	0	1	0
TACCAATTCAATGCGG	alt_5915_new	0	0	0	0	0	0	0	0	0	0
TTGTGAACTATTGTAC	alt_5915_new	14	22	18	10	11	15	19	15	18	19
GATTGATCGAATTACA	alt_5915_new	3	10	5	6	13	3	7	6	9	5
TGGACCAGATTTCTAG	alt_5915_new	0	0	0	0	0	0	0	0	0	0
TTCCGAGCTCTATATT	alt_5915_new	64	100	94	78	105	56	123	69	125	51
TCACAATTATATTCGC	alt_5915_new	41	50	49	35	44	30	64	25	43	23
GACTGATGCTCTTCGA	alt_5915_new	0	0	0	0	0	0	0	0	0	0
AACCGATTCGCCATCC	alt_5915_new	0	0	0	0	0	0	0	0	0	0
AGTTTCGCTACTCGGG	alt_5915_new	61	103	80	54	106	56	101	56	110	66
TCCGGACCGTCGCCGC	ref_5682_new	19	35	34	27	29	29	30	17	26	25
GTAACCGCCTTATGTG	ref_5682_new	64	51	84	68	73	71	59	66	65	65
CCGCCTGCCAAGTGGT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CGCTTGTCGTGGCCTG	ref_5682_new	139	138	170	149	150	142	134	136	153	135
CTCCACCCAACACCCT	ref_5682_new	28	33	31	35	27	30	32	23	40	25
TTCGTTCAGGTAAAGG	ref_5682_new	48	58	61	50	47	47	68	40	57	63
TTGAGTCTGTTTATGG	ref_5682_new	19	18	16	11	15	12	8	17	10	6
CTTTACGCATCAAAAT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TACTGATTGGCCTTCT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GGTCCCATTGTCTAGG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CAAGTTTTTATCAAGC	ref_5682_new	81	107	134	111	101	89	108	96	96	73
TGCAAGAATCTTGTGC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GAACCACTCTGGCTTA	ref_5682_new	7	6	11	8	10	8	8	4	6	3
TGGTTTCCAATATAGG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TATCAGGTCCAACGGT	ref_5682_new	8	7	17	13	16	17	14	7	15	13
GGTGTCTTGAATGCAG	ref_5682_new	36	42	52	45	42	49	33	49	35	46
GCTCCAGATCCTCAGA	ref_5682_new	66	86	75	75	55	66	81	80	79	68
TGGGATGTATATCGTC	ref_5682_new	57	82	102	70	64	75	85	79	74	59
TTGTTTCTAAGTGGTA	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TACCGGGTTGGAGGGT	ref_5682_new	29	39	40	27	38	27	40	42	70	23
GCGAAAGAATGAAAGT	ref_5682_new	40	46	67	55	56	50	43	44	41	52
TGAAGGTTAAGGGGGA	ref_5682_new	121	116	143	122	97	123	129	116	116	88
GCTCCATCCAGTATCC	ref_5682_new	22	21	28	15	11	15	23	26	25	12
GCCGTCGTTATGGTAT	ref_5682_new	13	29	31	31	45	25	42	35	33	27
CTGTATGATATCTATC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CAATCTCTTTTCCAGT	ref_5682_new	0	2	1	1	0	4	3	2	2	3
TCATACGGGTGCAACG	ref_5682_new	45	40	48	59	42	56	30	42	36	35
TTTTCTCGAAGGGCTT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TACAGTGTAGAAGGAT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CCTTCATAATGTGACC	ref_5682_new	10	17	14	10	16	22	12	12	16	10
GTACCGCCATCCACTG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CATGTGGTCCACCTCC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CGTCGATATCATCTAG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GCCTACTTAGTTTACA	ref_5682_new	120	104	145	99	124	101	109	100	114	108
CCTTGACTCCCCAGTT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GTCCTGAAAGGTAATG	ref_5682_new	108	85	139	89	95	103	105	112	97	77
ACGCAAGGTTGGATCT	ref_5682_new	47	69	61	59	50	71	63	55	59	53
ACCCGCCCTACCTAAT	ref_5682_new	49	67	71	55	66	43	57	49	74	48
CCCACGTTACGTCATG	ref_5682_new	34	12	24	32	23	16	33	23	23	20
TAGCTAACTTCTCGCA	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TACGTAATGAGGGATC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TCTGTGCTATTGTCTG	ref_5682_new	56	56	56	49	57	57	58	57	57	48
TTCAGCACATCCTCTT	ref_5682_new	28	22	16	25	28	18	26	19	27	20
AAAGTACCAGGCTATC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CAGATCTGATAAGTTC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GATTCCTTTCTGCTCC	ref_5682_new	43	15	29	27	11	19	8	20	22	25
CATCTAAAACGGGCTT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTGTCTTGTGC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GGCTCTGTAGAAGGTA	ref_5682_new	79	65	124	70	91	84	80	69	83	80
CCGCACTATTGTGTCC	ref_5682_new	12	13	17	12	8	12	16	14	22	10
CAAGACACGGGCGAAG	ref_5682_new	35	48	69	45	42	37	46	47	53	34
TGGGTCGCCATTGGCG	ref_5682_new	55	62	76	46	39	48	34	45	48	64
CACAAGCGTGACCACA	ref_5682_new	25	31	25	26	40	32	19	26	38	30
GAGAGATTGCCTACCG	ref_5682_new	30	33	35	23	34	30	24	20	33	24
GCCACGGGACGAGGGC	ref_5682_new	6	2	4	5	2	2	1	1	10	0
CCTTAGGGGTTCCGTC	ref_5682_new	27	22	28	29	33	19	23	18	23	29
CTCCGCTCCCTCGCGA	ref_5682_new	11	27	18	14	15	14	16	5	15	9
GAGTCGCGGCTTTCAG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GCGCTGAGACCTTGTC	alt_5682_new	40	38	39	40	32	39	44	42	47	34
TTCAACACAGCCCCCC	ref_5682_new	0	7	4	2	0	1	4	0	2	1
CCACATCATTTCGCTG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CAGGTTCGAGAGTTCC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CATCTCGATTCGGGTT	alt_5682_new	48	40	45	43	26	30	48	31	37	42
ACATGCTAGTATTACC	ref_5682_new	81	94	97	64	60	64	83	74	94	53
CGGGTGAGTCTGAGGA	ref_5682_new	27	17	44	25	22	19	14	19	18	29
TACGGAATTGCTGAGA	ref_5682_new	7	7	5	7	9	9	7	6	15	19
CTTTGTAGTTCCAGAG	ref_5682_new	16	10	23	13	21	7	11	13	19	11
CTCATTTGCTGTACAC	ref_5682_new	24	13	20	21	20	27	11	18	11	11
CCTTCGTCTGCGTAAC	ref_5682_new	2	12	5	6	16	7	19	7	15	4
GGCTTGGGGCTCATTC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GTAAAGCTGATGCGCA	ref_5682_new	46	51	46	39	41	30	50	30	42	20
TATCTATGGCTTTATG	alt_5682_new	23	28	27	30	20	26	19	16	25	16
GAAATCAGCGATTTCT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
ATTTTGCACCGTCTCC	ref_5682_new	3	4	5	4	5	5	5	8	2	9
CCTGTACTTTTAAGAA	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CGTGAGATTTGCACTC	ref_5682_new	3	8	6	3	7	3	8	2	10	7
GGCCGATTATATTTAG	ref_5682_new	49	38	46	33	39	29	40	58	41	44
AAGGACAGACTATCGT	ref_5682_new	35	43	50	43	41	52	51	44	36	40
TCTGTGGTCTCGTTTA	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CCCACATAACCTTGCG	ref_5682_new	11	10	18	20	20	20	24	9	31	21
GCGGTCTAAATTTATG	ref_5682_new	128	115	156	116	116	107	119	104	109	109
GTGGCACTACAGTGTG	ref_5682_new	28	38	37	32	34	27	31	40	33	37
TTGTATTTGGGTACAA	ref_5682_new	81	99	93	80	69	71	126	68	119	76
TTTTTAGGTCGCTACC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TCTGATCCGAATAGGC	alt_5682_new	239	262	313	264	271	237	304	271	303	203
ATTCCACCTGCGTGGA	ref_5682_new	42	60	53	60	38	52	54	43	51	47
GTTATATCAGTCATTA	ref_5682_new	38	45	43	24	42	23	47	29	35	28
GTTGGACTTCCTATAG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CATACCGTGCCGAATC	ref_5682_new	9	8	10	8	3	6	4	5	9	8
CATTATTATACAGTTT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
ATATCCTGGCTTATAT	ref_5682_new	3	4	7	2	3	3	2	1	2	4
TTCGCCTTATCTACCT	ref_5682_new	3	3	2	1	4	2	3	0	6	7
ACTGATCCGAATAGGC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CAATCGGCTGCGCACA	ref_5682_new	103	92	109	96	94	100	103	90	89	90
TGTGACGCCTGGCTTT	ref_5682_new	27	14	36	19	21	18	20	19	28	21
GTTAATGTTCAGTATG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
AAGGATGTGTATCTAA	ref_5682_new	24	20	27	25	22	22	24	14	39	29
ACATGGAATAAGATAT	ref_5682_new	120	111	141	122	105	107	121	103	101	109
CTGGTTGCCGCATTCG	ref_5682_new	33	43	52	37	51	27	45	35	33	34
TCCTTCCAAACTATCT	ref_5682_new	49	56	59	50	74	36	54	26	65	25
ACCTCATCAGAATGTT	ref_5682_new	14	14	14	8	21	10	12	12	12	7
TACTCTAAGGGCAGGT	alt_5682_new	239	234	270	255	217	230	208	237	226	186
ACCTGCACTTACGTAC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TTGTTTCTATGTGGTA	ref_5682_new	132	115	123	157	130	133	139	127	175	110
GAGCGACAACCAGGCT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CGGCCACCATTCCTTA	ref_5682_new	5	4	5	5	7	6	7	8	5	12
CGGTTTCACTTTTTAT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CGGCATTCGGTTCCTT	ref_5682_new	30	23	37	30	33	36	20	31	26	24
GAGAATTCACAAGCAC	ref_5682_new	62	59	95	61	53	79	76	59	93	55
ACGCCACGCTTCTTCA	ref_5682_new	34	28	29	32	32	27	20	34	29	41
TCGGTCGAATTTAGAC	ref_5682_new	18	17	14	11	20	12	6	6	12	21
ACGTCCACCGCCTTCT	ref_5682_new	29	38	35	23	40	24	41	27	44	22
ACAAGCCAACATCCAG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CTTGAATTCTCTATCA	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GCGGATTAACTCTAGG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
CTCGGCTCTAAATTTG	ref_5682_new	16	14	19	16	13	20	16	15	15	23
ACCTACCCAAATATCT	alt_5682_new	12	35	20	23	33	21	30	23	41	10
GGGTATTGCTTTGTAT	ref_5682_new	38	30	28	25	18	25	29	24	14	13
CTCTCCGGGTTTAAGG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TGTTACTGTCAAGGTA	alt_5682_new	7	7	14	15	12	12	16	6	7	9
GACCTCGTGTCCACGG	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TGAAGAGACATTTTTG	ref_5682_new	26	13	29	29	21	28	26	27	21	18
TTAGAGATTCAAGTCC	ref_5682_new	110	75	125	103	64	87	88	94	102	79
AGACAAATAATTCGGC	ref_5682_new	83	67	95	86	71	88	90	67	77	70
GCATACGCGAAGCGCT	ref_5682_new	6	1	2	1	0	0	5	2	1	2
ACTCCTCAGACTCTAA	ref_5682_new	0	0	0	0	0	0	0	0	0	0
AGTATACTCAACCGAA	ref_5682_new	3	4	5	12	5	2	3	2	1	6
GCACTAGGTTCGTTAT	ref_5682_new	0	0	0	1	0	0	0	0	0	0
ACTGGGCCCGCGATGT	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TTACGTACTCAGGGCC	ref_5682_new	5	4	18	7	6	6	5	4	6	3
TCTGCTTGTCCATTTA	ref_5682_new	0	0	0	0	0	0	0	0	0	0
GTTGATGTCGGGCGCC	ref_5682_new	0	0	0	0	0	0	0	0	0	0
TAATCGGCTGAGGGGG	ref_5682_new	198	154	243	179	149	172	166	171	159	173
GGCCTGAACCGCGGTG	ref_5682_new	26	27	39	33	31	33	32	24	16	19
CCTACAGAGCAGTTCA	ref_5682_new	18	18	34	20	25	22	32	21	20	14
CGGATTCTGTCAATGA	ref_5682_new	32	35	50	50	38	37	27	43	34	43
CGAAATTCGCCTCCGT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCCTGAGCGGCTA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCAATTCACTGTATGT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGTCCCATGCGT	alt_3351_fdr	58	60	49	60	75	61	68	46	54	48
AATTGGCTCCCAGCAG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CCTAAACTTGCAAGCA	alt_3351_fdr	21	57	36	21	37	27	49	21	49	17
ATATAGTGCCTGGAAT	alt_3351_fdr	0	0	1	0	5	5	3	4	2	1
AGTATGTTAGGGTGCA	alt_3351_fdr	10	12	25	12	14	14	16	9	15	13
GAGCTACGACTACTTC	alt_3351_fdr	10	9	14	11	11	12	9	8	15	3
TCCACTCTTGTTAAGT	alt_3351_fdr	73	84	96	61	86	83	88	87	72	68
ACCACCCCATTGCGTT	alt_3351_fdr	4	19	6	6	21	2	10	2	24	1
TTACGGCAGGGGGTTG	alt_3351_fdr	14	16	23	18	7	18	14	16	13	12
ACGCGACGATTAAGGG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGTTTGACACTAT	alt_3351_fdr	5	11	6	4	9	5	8	7	6	5
ATATGGTTCTCGGTTC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TATTTGGGTCCAGGAC	alt_3351_fdr	149	162	205	163	191	126	167	142	201	169
TACATGTGGGCCGCCT	alt_3351_fdr	4	2	3	1	1	0	2	2	2	1
TTTTTGTCCGTGCTTT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CGGCATTTGTAGCCCC	alt_3351_fdr	1	0	3	1	1	0	0	1	0	0
AATTTCGGCCTGGTGA	alt_3351_fdr	13	8	16	14	14	22	21	21	16	19
CCCTTCATCCGGGTAG	alt_3351_fdr	146	188	187	137	193	136	215	153	225	126
TATGATCAATTATACC	alt_3351_fdr	52	57	45	45	36	36	44	34	52	43
CGACAGGTCGGGTGCC	alt_3351_fdr	5	2	4	5	4	2	6	7	4	2
GATCCAGCCGACACTC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGCTACGGATCTT	alt_3351_fdr	6	9	11	7	11	5	5	13	10	10
TGGTGAGGGACAGAGG	alt_3351_fdr	22	12	26	12	25	29	21	27	20	19
GCTTCGCAGAACGTCA	alt_3351_fdr	1	2	1	2	4	1	0	1	2	3
TGATACTGTCCAGAGT	alt_3351_fdr	12	20	14	4	19	12	11	10	15	10
ACTGTGCGGTCACTTA	alt_3351_fdr	26	20	18	14	19	16	9	7	28	16
AGTCTGAGCTCTATGT	alt_3351_fdr	9	5	6	8	8	9	9	6	9	8
AAGAGGTTCACAACTT	alt_3351_fdr	70	89	109	76	71	71	86	69	94	82
GTCGACCCAGCATGTC	alt_3351_fdr	10	13	6	14	26	8	21	10	23	15
ACCCTCTCGTTGTTTG	alt_3351_fdr	14	16	18	28	16	11	19	10	13	7
TCTCGCACAAGGTGCC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCTGGTTGGGTTC	alt_3351_fdr	28	33	52	37	38	43	33	43	35	49
AATCTTTTTTATATTA	alt_3351_fdr	81	70	81	60	74	62	78	73	74	58
TACCAACTTAGCTCTT	alt_3351_fdr	87	111	117	81	101	94	119	82	90	77
CGATACATAATTTATA	alt_3351_fdr	5	3	6	5	7	4	4	8	1	1
GGCAGAGCACTATTTT	alt_3351_fdr	44	33	44	40	38	33	34	37	33	34
AGGGTTGAGCCACAGC	alt_3351_fdr	83	84	104	85	82	62	93	67	79	77
CGGTTCCCCAGTTTAC	alt_3351_fdr	22	25	26	18	27	29	29	20	25	19
GCGGCTACTCTTCGCT	alt_3351_fdr	5	6	10	6	7	8	6	7	9	9
GTTGTTGCTTTTTCTA	alt_3351_fdr	34	35	30	22	30	30	30	28	33	20
GATGCCACGCCTTCTA	alt_3351_fdr	1	1	0	0	2	0	1	0	2	0
GAAATTTGGGAATCCA	alt_3351_fdr	23	22	36	26	36	22	23	30	39	32
CATGAGAAATATCGGA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGAACATACCCTG	alt_3351_fdr	75	86	79	65	84	68	80	79	81	88
ACTTGCACTACCCGAT	alt_3351_fdr	0	0	1	2	5	0	0	1	1	1
TTGCCTGCGAACCGGA	alt_3351_fdr	6	13	13	8	18	8	20	7	13	8
CTAGAGCTGGTATACT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCGTATCCGGGTAATG	alt_3351_fdr	37	35	55	41	33	34	29	33	33	36
GTCCACGCTCCTAAGG	alt_3351_fdr	8	4	4	4	8	2	3	1	3	4
TGGCTCGTGGATCTCC	ref_3351_fdr	142	117	177	136	100	137	94	128	106	132
CTGACATCCTAGAAAA	alt_3351_fdr	51	65	58	71	62	44	48	35	65	33
TAGTCTTCTACCCTGC	alt_3351_fdr	52	54	52	47	55	46	40	35	46	50
CTGATCTAGTCTTCCT	alt_3351_fdr	17	23	23	22	21	26	28	15	31	19
AAGCACATCCTGGATT	alt_3351_fdr	35	34	38	38	33	39	43	28	36	32
TTGAGCTATTCACGTT	alt_3351_fdr	60	71	81	73	74	66	84	71	94	73
ACCTCATGGCCCTCTT	alt_3351_fdr	76	51	67	69	59	65	65	58	73	54
TTGGAATTGTACTCTT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTGATAATCAGA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
ACTATATGTACAGGTC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTGCCTCGTCCGC	alt_3351_fdr	84	46	80	76	86	75	75	60	79	69
ACGTCAATGACCTCTA	alt_3351_fdr	20	21	17	22	25	19	24	26	26	20
TGCCTTATGTGTGTTG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCATATCGTTATG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTTACCCGCTTGC	alt_3351_fdr	46	37	45	36	52	21	70	27	63	23
AACAGGAGCACCGGTA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTAATATATGCCA	alt_3351_fdr	43	32	32	22	22	24	36	27	41	23
ATCCCATGACCTCTTT	alt_3351_fdr	22	23	25	30	24	11	13	10	16	11
AACAGCCGTTTAACAA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GTACAGGGATCGTCGG	alt_3351_fdr	39	46	47	60	51	35	47	41	39	34
CGGCATTTGTAGCACC	alt_3351_fdr	681	602	851	706	632	586	642	687	652	599
CACTCGGCCCTGTATT	alt_3351_fdr	28	22	27	35	39	31	32	21	24	28
TTTACTTCAAAGCTAT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGCCCCATGAGAA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCCCTTCCCTGGA	alt_3351_fdr	28	20	21	16	33	17	21	25	35	11
GACCTGAGATATTTCG	alt_3351_fdr	44	52	46	60	62	51	47	52	42	45
GTTCAGCGTTACGAGA	alt_3351_fdr	8	9	12	11	17	11	10	2	10	7
ACTTAGGTATATGCCG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGCTCATAGTGAA	alt_3351_fdr	16	16	18	13	30	15	16	20	27	16
TCCTGACTTGTTTTCG	alt_3351_fdr	30	34	38	21	33	21	27	21	23	20
TTCAGAACTATTTACC	alt_3351_fdr	32	30	31	31	31	19	29	29	45	27
GGCCGGGACCTCCGTT	alt_3351_fdr	4	9	9	8	9	4	5	11	10	5
TATCCACATTTCCTAC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTGCCTGATTCAA	alt_3351_fdr	31	40	33	37	28	29	34	33	35	35
GTTTGAGATCGCATCA	alt_3351_fdr	9	18	18	19	10	13	27	16	18	16
CGGTCAGAAATGAGCA	ref_3351_fdr	88	72	86	73	83	71	93	56	102	76
TTCATCCTTGATCAGG	alt_3351_fdr	46	23	42	35	43	32	42	37	37	41
TTTGGACATTCAAAAC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GGTATACGTCGTGGTC	alt_3351_fdr	0	1	2	1	1	1	2	0	1	0
TGTGTAGCAATGTCAA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGACCGAGTTATTATA	alt_3351_fdr	30	35	33	20	22	22	30	28	39	19
ACTCGTATTATTGATT	alt_3351_fdr	33	37	54	46	33	50	27	39	49	32
TTCCGTCCAACACGAA	alt_3351_fdr	68	78	88	80	87	77	102	67	78	81
AAATATATCTTGTATT	alt_3351_fdr	7	8	12	9	10	10	4	14	9	7
CTTACCAACCGGAGTA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGAGTAACCCGC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCGTATCTCGAAA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCTCGCACGGGTA	alt_3351_fdr	25	16	15	15	30	17	20	21	20	16
ATTTGTGTGAAACGTT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
ATGATACCTGCGTAAC	alt_3351_fdr	38	55	58	45	46	49	44	42	43	34
TCCCCTCGGAGGTCTG	alt_3351_fdr	65	76	89	86	83	71	88	79	82	81
TATTCCGGAAGCGCTT	alt_3351_fdr	19	22	27	18	20	26	13	12	29	11
TTTGCGAGTTAGTATC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGCTCGCACGTCT	alt_3351_fdr	16	6	20	13	14	10	15	14	18	12
CCCTTCCGATTTCTTT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTTTGGTTCGAG	alt_3351_fdr	27	16	17	12	24	6	29	18	26	12
TCGTGGCCCTTGCGCA	alt_3351_fdr	96	158	143	114	141	120	131	127	108	155
CAATTTGCTATACTTA	alt_3351_fdr	52	75	69	46	64	54	58	41	55	49
ACGGTTGTTCTGCGTC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	1
CCCTTATTTATTTTAG	alt_3351_fdr	82	55	82	80	69	99	53	67	86	51
GCGGGCACGTATAACC	alt_3351_fdr	146	154	197	196	154	149	161	139	165	153
AGATCTCATGTTGTCG	alt_3351_fdr	57	44	73	58	78	56	73	47	57	59
TTCATATAGTATAGTG	alt_3351_fdr	53	62	77	61	75	47	70	42	39	43
GACCCGCCGATGGTTG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TACCCTGCCTGTTAAA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAGGGATGGATGC	alt_3351_fdr	21	20	20	17	14	19	14	19	9	13
ACCCTGAGACCGTCGT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GACCATTGAGCTGGTT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCTATAATTGCTCAAC	alt_3351_fdr	62	82	83	69	76	60	49	50	68	68
CGAATACAGATCCAGA	alt_3351_fdr	20	11	10	6	12	14	7	7	9	12
CGCAACCATGGCGCGT	alt_3351_fdr	3	15	6	10	10	4	10	5	11	6
TTTCCTCGTATCACCC	alt_3351_fdr	18	15	22	16	17	14	20	15	31	16
ATACATGCGGAGCACG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TACGTCACCCCATAGA	alt_3351_fdr	25	80	41	32	54	34	67	40	61	31
AAGTGTCGCAATACAC	alt_3351_fdr	7	7	7	9	3	5	5	2	6	11
GTCAGTGAATCGAGTG	alt_3351_fdr	8	15	17	9	9	12	10	17	14	9
TTCTCAAATTTTAGTC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGGCCTTTTTGGC	alt_3351_fdr	39	50	47	50	45	52	59	33	45	31
TATGGTATGGAACGAT	alt_3351_fdr	29	35	36	37	41	29	28	29	36	20
CAGGGCAAAGCCCTAG	alt_3351_fdr	55	57	85	66	55	75	62	75	69	69
TGAAGCCAACTGGGCA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TCACGTTATAATTTCA	alt_3351_fdr	25	31	20	29	39	14	28	27	27	17
TTGGCTCACTTCATTG	alt_3351_fdr	43	48	50	45	52	68	48	42	52	38
GTTCTCCTGGCCCACG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TACTCCATCACTCCTC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGTTATCAAGTAA	alt_3351_fdr	20	22	26	19	19	27	21	18	29	27
TGTTTTAAGCTCATCC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTCGATGCAGATAGTG	alt_3351_fdr	18	19	20	11	30	21	15	19	23	19
ATATATCAGACCCTCG	alt_3351_fdr	109	99	130	67	108	116	125	104	111	111
GTAAGTTCAACCGACT	alt_3351_fdr	44	35	58	43	45	49	50	53	45	34
GGGGTTTTTGTTCCTT	alt_3351_fdr	25	32	38	40	24	40	37	30	38	26
CGCATTCTGGATGGGT	ref_3351_fdr	194	139	220	207	183	169	181	188	167	159
CTCGATAATCCAGAAC	alt_3351_fdr	15	6	8	11	13	9	11	11	11	14
CTATCACCCTTTTCGA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGGCAGTCCGCGG	alt_3351_fdr	14	22	31	23	19	34	33	17	30	33
CTCGGTGTTTTACCCT	alt_3351_fdr	1	4	2	3	2	1	5	2	5	1
CCCACTATCACCACGC	alt_3351_fdr	21	25	26	17	30	18	17	27	21	15
GTTAACTTCGATATAT	alt_3351_fdr	5	4	5	4	5	5	8	8	9	9
TGAATGGGGGTCTTTT	alt_3351_fdr	20	17	15	19	14	20	13	16	22	14
TCTGCGCCTTTATTGA	alt_3351_fdr	19	38	41	32	34	17	46	30	34	25
TACACTTTACCGCGGC	alt_3351_fdr	39	59	42	44	37	39	57	40	55	31
TCCAAATGTTATCCCT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
AAAACGCTTGCTTGAC	alt_3351_fdr	2	3	1	1	5	0	5	6	3	4
CGAGTTTCACATGATA	alt_3351_fdr	11	4	8	8	9	10	3	7	2	5
TTAGATATGAACCAGG	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CTGCACTCAAGCGGGT	alt_3351_fdr	23	16	20	26	23	12	11	12	33	23
TCTAGCGCTCGTAGCA	alt_3351_fdr	8	24	20	19	29	8	32	12	14	14
GTTGGATGCAATGTAA	alt_3351_fdr	40	30	39	27	38	37	46	31	46	35
GACGTCGGCGTATGTC	alt_3351_fdr	20	15	19	17	12	27	20	13	19	16
CACGTTACGCCGGTCG	alt_3351_fdr	27	32	30	32	40	27	31	29	43	31
TAGGCTTTCGTAGGCT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGTAGCATATTCG	alt_3351_fdr	37	58	46	42	38	53	31	42	45	37
AACTTCCGTATTAGCA	alt_3351_fdr	30	32	43	26	47	29	47	36	26	28
GGAAACGTTCGCGTGA	alt_3351_fdr	134	148	174	143	167	153	189	147	175	106
ACATGGCCCTTCCTAT	alt_3351_fdr	21	23	24	21	21	24	28	15	26	20
ACAGGTATGAGCTCGT	alt_3351_fdr	12	11	19	12	4	10	14	7	18	4
TTGCATTCACAATCGT	alt_3351_fdr	19	7	7	25	12	23	11	17	18	17
TTCCCTCGTCACGTAA	alt_3351_fdr	18	21	19	20	31	18	19	23	18	11
ATGTGTTTCTTGCATA	ref_3351_fdr	124	107	137	140	91	110	118	109	123	108
GGCTTGTTCGCTTATC	alt_3351_fdr	30	20	25	15	24	12	28	14	26	15
CCAGCCCGTGTCTGGG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CATTGATGTTCCCTAG	alt_3351_fdr	72	65	85	77	80	75	75	59	78	71
TAGTGTTGCTGACGAC	alt_3351_fdr	12	11	7	19	11	10	14	10	13	12
TTTCGATCAATAAACT	alt_3351_fdr	2	1	2	2	1	5	2	3	6	1
TACTAGGTTATGGTTT	alt_3351_fdr	41	44	42	35	34	33	26	25	33	31
ATCACGTGGATCATTA	alt_3351_fdr	2	7	4	12	0	7	2	7	3	5
TGTAACTTGTTACTCG	alt_3351_fdr	3	0	0	5	0	2	0	0	0	0
CTGACGCTTCCTTGTG	alt_3351_fdr	7	15	14	11	14	5	10	12	6	11
TCGTCTAGTCGGTATA	alt_3351_fdr	41	41	38	31	38	44	47	30	50	28
CTTAATGCGCTCAGAC	alt_3351_fdr	35	43	54	46	63	56	63	41	53	39
CCGGACACCGTCGCAT	alt_3351_fdr	5	5	6	4	8	2	10	10	9	7
AGAGGATTCTCTTGAT	alt_3351_fdr	3	5	4	2	4	5	5	5	5	4
ATCGGATATTTTCCGT	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTTCCAGTACTTA	alt_3351_fdr	52	37	70	39	39	41	57	44	50	26
TGTCTCTTGATCGCAG	alt_3351_fdr	35	19	47	23	31	28	19	32	23	23
ATCCCCTTTTGTGGTC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GATCCCTATGCGGTCG	alt_3351_fdr	19	13	15	11	16	16	20	21	23	12
GAGTGAGGGCATCGTA	alt_3351_fdr	43	44	58	38	34	59	50	36	39	40
CTGTGTAACCTCAGAC	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
GACTGTCCCCGCCATA	alt_3351_fdr	11	37	16	16	37	12	39	22	54	17
ACTCTGTTAAGCCATG	alt_3351_fdr	26	15	17	21	19	15	16	17	26	29
GCCAGACGACTAATGT	alt_3351_fdr	41	70	52	41	41	39	51	33	73	42
TATTACGTTCCTCCTG	alt_3351_fdr	23	18	23	19	27	23	18	21	19	17
TTGATCGATTAGGTTA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTGTCGGGCTTTA	alt_3351_fdr	0	0	0	0	0	0	0	0	0	0
TATACAGATGTGCCGC	alt_3351_fdr	12	14	23	13	15	12	9	11	10	5
TTCATTTTCTACTCTT	ref_2618_upstream	144	81	171	154	85	156	81	135	97	142
CACGATCGGCGTGCGG	alt_2618_upstream	134	77	136	129	62	111	85	109	86	98
TTACAGATTTCTCACA	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATGTGCCACGCA	ref_2618_upstream	57	15	79	64	32	45	31	69	32	39
ATCTGACTTGACGGGG	ref_2618_upstream	20	9	22	15	10	22	4	20	8	7
GTATTTTACACTCCTA	ref_2618_upstream	13	10	12	5	13	7	21	13	20	12
GTCAACGTGCGTTGTA	ref_2618_upstream	79	50	78	68	46	73	55	69	47	69
GCCGCGTTGCTAATTC	ref_2618_upstream	63	51	81	77	61	48	70	61	56	56
GACACCAAGTATAGGA	ref_2618_upstream	44	28	43	45	22	42	30	31	27	43
ACATATATCCCTCGTG	ref_2618_upstream	80	24	90	88	28	66	42	68	50	68
AAAGGAGTCAAGGTTC	ref_2618_upstream	37	25	52	40	27	35	27	36	15	35
GGCGCAGGCGTGTCTG	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATCTTTGTCGGT	ref_2618_upstream	66	42	70	72	24	60	25	70	17	60
TGCCCTACTATTAGCC	ref_2618_upstream	45	33	67	59	44	60	37	30	35	43
GCCCCAACAACGTTTA	ref_2618_upstream	10	7	6	17	4	12	7	7	5	4
GGCTCTTTTCTTTCAA	ref_2618_upstream	51	17	56	50	29	40	22	46	20	57
CTAGCACGGCATCTGC	ref_2618_upstream	63	34	71	62	33	82	34	58	61	60
TTGACAGGCTATAAGT	ref_2618_upstream	87	55	113	91	54	78	61	87	71	81
GAGTCACGCTGTAATT	ref_2618_upstream	112	51	125	107	55	99	51	104	45	96
GACTTCTCGGCCTTCT	ref_2618_upstream	932	375	1056	919	387	793	466	864	425	858
CTTCGGACTGAATTAC	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
TATCCTGCCTTATCTT	ref_2618_upstream	12	1	12	5	1	8	3	5	3	10
TTTGGCTCCGACTTCG	ref_2618_upstream	27	14	26	28	12	31	12	25	23	29
ACTCAGAATAGGACCG	ref_2618_upstream	53	25	51	45	25	34	22	47	31	28
GCGGAGCTCGACTCGT	alt_2618_upstream	485	238	604	516	224	482	258	498	240	444
TATGCTTGAGTGTGTA	ref_2618_upstream	44	42	64	47	44	61	36	37	42	40
GTTCGATCGCATGAGG	ref_2618_upstream	118	73	145	138	81	121	81	112	80	119
GCAGGGCGTAAACCTC	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGCCTCGATCAAC	ref_2618_upstream	15	6	15	14	8	15	7	11	8	18
GTGGGTGATTCGTTGC	ref_2618_upstream	38	25	44	29	20	26	17	30	16	27
GTTGTTAGTACGTTGG	ref_2618_upstream	408	210	449	472	223	431	222	373	242	333
ACGTTGTCATCTGGTC	ref_2618_upstream	90	52	112	104	36	78	47	96	52	70
AGCGTTTCTCCAACCG	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCGCTAATTTCTC	ref_2618_upstream	56	27	69	48	30	46	26	40	32	42
GTTACTGGGCTCCTTC	ref_2618_upstream	158	69	197	161	77	141	85	163	48	132
CTGCATCACTGATATT	ref_2618_upstream	195	102	236	228	116	209	109	194	110	181
TCTGGTTTAAGCCTTA	ref_2618_upstream	121	56	120	117	53	77	50	91	58	104
ATCTGCCTCTAATTCT	ref_2618_upstream	13	5	20	9	7	9	5	8	8	9
AATTAGAAACGATGTC	alt_2618_upstream	42	23	57	46	23	50	20	39	13	32
TTTGTCTGAGCGAAAA	ref_2618_upstream	20	24	41	27	31	32	17	28	21	39
GAAAGTAACTCGCGGT	ref_2618_upstream	27	11	37	28	12	21	16	25	13	27
CGCGTATTGGGACAGT	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTCAATGGACGGTCAC	ref_2618_upstream	101	75	166	115	63	115	73	92	79	110
GTGTTCAGTCCCCAAG	alt_2618_upstream	65	29	54	67	26	66	40	64	27	62
TGTTCTCTGCAAGGAC	ref_2618_upstream	52	24	73	38	35	55	15	47	32	60
TTTCCATCGCCCTTGC	ref_2618_upstream	2	4	3	6	5	10	3	6	3	8
ACCACGATTCTCCTTT	ref_2618_upstream	19	3	18	17	10	15	13	17	7	19
GGTTCGGCAGCCTGTA	ref_2618_upstream	123	52	182	127	92	139	69	121	59	120
AATGAAGGTCCGTTTC	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGTTTACGGGTCC	ref_2618_upstream	72	46	90	69	44	62	43	74	58	58
TAGAGTTACGTTTTAG	ref_2618_upstream	0	0	3	1	4	2	0	4	0	2
GTGTATTCCCAGCCGC	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGCACGTTTGATT	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAGTTGTTTCTAG	ref_2618_upstream	19	6	18	4	16	18	16	14	10	10
GAGGACGTCCAAATTG	ref_2618_upstream	56	23	55	65	24	52	35	46	18	45
CAGTTTAGGTTTCCGT	alt_2618_upstream	179	105	217	211	87	192	113	155	112	162
TCGCCATTCCGGAGGG	alt_2618_upstream	39	21	52	63	22	46	15	54	27	36
AGTCAATAAGTCTTCG	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTAGATCTCTAGC	alt_2618_upstream	93	77	113	119	61	114	88	97	74	101
CCCGCGCTTCAGGCTA	ref_2618_upstream	10	18	26	11	18	10	19	20	20	9
CGTTAAGGTGGACCAA	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
TGACTTTCGGTCATGT	alt_2618_upstream	65	27	105	88	35	64	33	75	32	71
AAGTCCATAGGTGAGT	ref_2618_upstream	62	33	68	64	30	53	31	55	25	55
TCCAGTATCTATATAC	ref_2618_upstream	136	91	176	147	115	149	115	150	98	145
AATGGCGATGCTCTCC	ref_2618_upstream	12	9	19	10	10	16	9	16	8	12
GGGTTCTCCGAGACTA	ref_2618_upstream	23	16	33	29	15	28	16	34	18	28
ACTATTGTATCCATCT	ref_2618_upstream	43	24	44	38	18	45	19	44	14	43
ATCGATCTAGTGGTCT	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
CTCATCCTAACTCATT	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTCACCTCGCCTG	ref_2618_upstream	108	61	146	152	60	95	57	146	84	111
CTATTCAGCGTTATCC	ref_2618_upstream	82	48	98	101	52	83	58	102	42	67
TATCCCGCCTATTTTC	ref_2618_upstream	37	13	52	40	19	38	13	36	17	28
TGGGTTGACCTGTTTT	ref_2618_upstream	27	19	57	37	19	40	24	24	17	32
TCTCCTGTTTCGTTTT	ref_2618_upstream	694	221	735	635	235	641	259	580	242	604
AAACCTGAAGTCGTGA	ref_2618_upstream	25	10	16	14	6	20	13	15	7	13
TAATTCATTTCAGCTC	ref_2618_upstream	8	5	7	7	1	6	8	1	1	5
TTCTTAGATGTTTCTC	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
ATGAAGGCCTTGATAA	ref_2618_upstream	97	33	107	105	25	87	63	96	66	93
CTGAACCTTCGCGTTA	ref_2618_upstream	13	3	9	18	7	15	7	10	6	12
TTTCATAGAAAGTTTG	ref_2618_upstream	12	7	13	16	1	8	9	22	9	22
TGATCAATCGGTGATA	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
AATCCGTCGGCTCGTT	ref_2618_upstream	0	0	0	0	0	0	0	0	0	0
CACATTACCATGGATT	ref_2618_upstream	130	77	153	132	61	136	67	115	71	123
ATTTCGTACTAATACA	ref_2618_upstream	38	24	60	49	25	40	24	35	30	34
CGCCCACTCTTGTTCG	ref_2618_upstream	82	40	98	87	52	83	58	87	51	69
TACTGCACATCTCGAC	ref_2618_upstream	8	5	9	11	9	8	6	8	2	7
GTTGTGGAGTACTTCT	ref_2618_upstream	55	11	56	56	38	46	25	37	36	44
ATGTTTCTGGTCCTTT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
AATAGCTCATCTAAGG	alt_1643_upstream	84	100	92	89	94	61	98	54	94	65
AGGGAGGTCTTATTTC	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTTTTGGCGGGTC	alt_1643_upstream	84	108	106	87	113	88	128	71	126	90
TACTCTCGGTGTAGGA	alt_1643_upstream	2	8	6	6	5	4	9	6	3	1
GACAGTCGGTGCCCTT	alt_1643_upstream	6	7	5	11	7	7	6	5	5	2
AATGGTCAGCCAGGCG	alt_1643_upstream	17	14	16	8	7	16	11	4	17	7
CTAGGACGTCCTCCAG	alt_1643_upstream	6	17	19	10	18	10	14	15	13	13
TTTATCTCACTTATTT	alt_1643_upstream	27	47	46	32	42	40	37	30	39	26
CGCCGGACAGAGGTCT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCTGCCCTTTATA	alt_1643_upstream	32	69	61	43	80	37	84	32	68	36
TAGGCGCACGATGCCT	alt_1643_upstream	34	38	39	23	45	24	46	20	46	33
ACTGTGGACATGCCCA	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTTCGGTACACTG	alt_1643_upstream	34	45	48	35	40	33	50	22	53	24
CGCCTACAAACAATAT	alt_1643_upstream	16	31	24	17	29	19	19	18	21	20
TGCAGCTATCCTAGTT	alt_1643_upstream	56	77	60	43	42	45	61	36	64	39
AGCGTGGCCTATTGCG	alt_1643_upstream	72	82	94	62	83	70	73	69	95	61
TGACGAATTTTCCGGT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
TTCAAGTCAGGTTTCT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCATGCTCAGAGT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGTAGGACCATCA	alt_1643_upstream	15	21	13	13	22	10	17	11	18	16
CGAACATACCTTCGTA	alt_1643_upstream	38	84	40	38	77	44	62	38	49	30
TGACTGCTCACTTCTG	alt_1643_upstream	177	218	188	184	240	162	251	149	211	174
ACCATGATGCGCCCAC	alt_1643_upstream	18	17	14	17	17	13	22	11	18	15
ATATTCACCTTACCTG	alt_1643_upstream	5	25	17	7	16	7	23	1	38	12
ACCTTTAAGCTAGAGG	alt_1643_upstream	11	6	8	12	15	7	9	4	12	5
CTAGGACAGGGCCATG	alt_1643_upstream	39	45	41	26	37	40	48	14	31	25
GCTCCATTTAACCATG	alt_1643_upstream	18	17	12	15	18	7	21	14	26	15
TCACGATCGGCTTGGT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTCCACGCACACC	ref_1643_upstream	52	62	62	47	61	49	44	36	79	46
CTATTTGATATTCGGA	alt_1643_upstream	24	29	20	27	14	22	23	26	31	21
CATCGGCGGTTCTACC	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTGATAGAGTTCC	alt_1643_upstream	6	0	7	5	1	2	4	2	9	10
AATGGATGCTGTGTGT	alt_1643_upstream	305	342	241	233	343	228	329	207	351	231
CTCGCTGGGAGTTGAT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCAGTCGCATCAG	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
TAACTGGAGACTTCAT	alt_1643_upstream	19	27	12	11	21	19	15	23	23	17
GTTTCTCCTTCTCATT	alt_1643_upstream	0	3	2	3	3	2	3	1	2	1
AGCTTTGCAGCTCGCG	alt_1643_upstream	12	14	16	22	20	13	11	14	17	18
CGCGTGTGTATAGAGT	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGATGTTCGCCTA	alt_1643_upstream	29	194	32	29	189	29	190	18	201	20
TCTCTTTTGAAGGCCT	alt_1643_upstream	37	24	29	40	48	40	43	33	47	39
GTTGCGGTCGTCATAC	alt_1643_upstream	43	66	46	39	69	42	66	38	72	47
GAGCCTCCAAATGCCC	alt_1643_upstream	38	56	40	30	66	20	49	31	58	43
CGCCACATAGTTGGAA	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTTTGGATATTG	alt_1643_upstream	20	24	27	20	25	14	31	27	33	12
ATCAGTCCGTAACTCG	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
ATATGCTGCTTTTAGC	alt_1643_upstream	5	10	10	4	5	3	3	3	12	10
TGTTCTCAGACTTATT	ref_1643_upstream	101	124	138	97	120	85	119	105	137	79
TTTAAAGCATTGACGG	alt_1643_upstream	7	9	10	6	9	6	7	2	4	5
ACTCATATTGTTGGAG	alt_1643_upstream	23	29	32	23	28	26	26	24	30	26
CGAAAATGATTAGTTA	alt_1643_upstream	35	59	58	52	78	49	78	50	85	44
ACAGAATCAGAAATCA	alt_1643_upstream	92	138	139	86	142	105	123	102	140	81
TCTTTCTCATCATATC	alt_1643_upstream	109	154	156	115	169	126	154	137	182	129
AGGTGCCCCCGTTACC	alt_1643_upstream	14	5	18	9	7	12	6	12	10	13
ATCTGTAACGTCTGTC	alt_1643_upstream	52	56	60	48	74	48	56	25	58	46
ATGCGTGATCTAAGGT	alt_1643_upstream	5	12	11	4	12	10	12	9	10	10
GGCTTTACGATTTACG	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
GCCCAATCAGGCCCAC	alt_1643_upstream	20	17	28	16	20	22	23	19	31	23
AATTCTGATCAGGTTT	alt_1643_upstream	4	16	17	7	14	9	13	6	22	7
CGTGTACCATCCACAC	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
AATTTATAAGCTATTC	alt_1643_upstream	108	95	137	95	133	76	100	79	103	79
CTGGACTAAGTGTTGC	alt_1643_upstream	11	21	20	7	20	11	14	6	16	13
AGGAGTCGTCTCATAG	alt_1643_upstream	58	114	91	60	107	62	119	70	107	57
AATTAAATGGGAGCTT	alt_1643_upstream	6	16	5	9	9	6	9	10	11	9
GATGAACAGAAGGTAG	alt_1643_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCTGAGGGCCCAA	alt_1643_upstream	9	6	6	7	5	4	13	5	5	7
AAGCTGTGACATGCGT	alt_1643_upstream	15	17	13	23	19	21	19	12	19	15
GGCGGGTAAGATCATA	ref_2645_negative	16	14	15	19	16	13	20	14	16	9
GCTTAGGGGTTCTCCG	ref_2645_negative	36	53	48	38	40	38	63	39	45	25
CGCGCTGTCATTCTTT	ref_2645_negative	60	109	86	65	89	60	87	69	102	66
AATCCACTTAGTCCCG	ref_2645_negative	41	53	44	39	64	28	55	28	36	30
ACTTCAGTTACAATCG	ref_2645_negative	12	17	12	13	24	10	18	16	19	11
TCACTTTCCGAGCAAC	ref_2645_negative	55	75	64	46	96	45	81	52	106	45
GATGTGTGCTGCTTTT	ref_2645_negative	1	16	4	3	9	2	14	5	8	3
CTACTTGAGCTCTGCA	ref_2645_negative	21	25	15	12	21	10	22	8	26	16
ACGCTCAACAGTAAAC	ref_2645_negative	44	62	49	33	54	30	54	36	59	35
ACAGTGCTGACGATCG	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
TGTCTCTAAATCAACG	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
AGGCAGATCATCTCAA	ref_2645_negative	5	3	12	0	5	6	8	3	2	1
AGTTACGACCTTAAGG	ref_2645_negative	3	4	3	4	4	3	4	0	6	3
TATGGGATGTCAGATA	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
TGGTTCTCGGATAGTC	ref_2645_negative	1	0	1	2	0	1	1	0	1	0
CACCGCATTCCGGGTT	ref_2645_negative	3	8	9	3	14	7	4	11	12	7
TTCGTTTCTAGCATGT	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
TATTAGTACCTGCCAG	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
GCCGCTCATATTTGTC	ref_2645_negative	123	279	133	104	263	118	255	120	303	110
CCAGTTTGAACCGCGC	ref_2645_negative	175	244	187	147	234	144	222	153	240	140
CCTAGGGGTATCGTGA	ref_2645_negative	145	177	159	118	135	139	198	108	177	119
GGCTCCTACATTGCCT	ref_2645_negative	4	4	2	0	0	0	1	0	2	2
AACCCAGGTACATCCA	ref_2645_negative	6	20	22	10	15	12	12	13	16	14
TAGTGTCCTCAGTGTA	ref_2645_negative	27	51	23	32	47	34	30	41	54	20
AAGTATTTATATGTGC	ref_2645_negative	4	6	1	6	7	3	14	2	12	3
TTCTTTGGTGAGTTTC	ref_2645_negative	9	24	12	20	32	6	13	17	22	14
CTGCTTAGAGAATGAG	ref_2645_negative	36	68	49	31	75	40	69	37	73	27
GGCATGCGACTCAAGG	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
GTGCATCTTTTTTCTG	ref_2645_negative	34	59	49	35	52	32	58	33	71	39
CTCTCTATTACTCGTA	ref_2645_negative	5	11	5	0	7	1	13	1	7	5
GACTCCTCCGTCCCTG	ref_2645_negative	23	71	20	31	63	11	63	11	75	14
TGTGGGATTTGGTGCT	ref_2645_negative	19	37	29	20	30	22	32	23	30	20
TCTCCGGGACTGTCTG	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
AAGAGTACCAGTGTGG	ref_2645_negative	4	4	3	5	9	7	7	6	8	2
TATTGTAATGAACGAT	ref_2645_negative	131	159	158	117	203	122	204	114	191	115
GCTTGATGCTCGCTGT	ref_2645_negative	68	70	62	47	72	53	79	48	59	61
CACGCATATAGCTTAT	ref_2645_negative	19	37	35	24	44	25	44	20	42	20
ATGTTGTGTGTGGATC	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
CGGGTATGTTAAGATC	ref_2645_negative	8	15	9	13	16	5	15	9	11	6
GAGCGATTATAGATTA	ref_2645_negative	23	29	29	32	47	27	35	23	41	21
CGGTTAGGCTCGCATA	ref_2645_negative	13	18	26	16	28	10	36	10	28	10
GAGTGCCAATTTCCAC	ref_2645_negative	20	53	21	26	44	22	55	29	44	31
ACAGCGTATCGTACGC	ref_2645_negative	13	32	19	13	21	14	21	17	15	8
CCATCGCTTTCTTGGC	alt_2645_negative	5	25	11	15	32	12	33	10	28	3
ACCAACTTCAGGGCTG	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
ATCGACGATTAAGGAC	ref_2645_negative	116	197	167	139	217	160	254	149	227	131
TCGTTCTAGTAACCGC	ref_2645_negative	57	90	75	60	89	44	110	34	101	55
CCGTATAATGAACGTA	ref_2645_negative	26	47	18	28	44	18	45	33	53	25
CCCTAAGAGATATGCC	ref_2645_negative	32	45	57	38	81	30	57	39	69	35
AGCCTCTTCCGTCGGC	ref_2645_negative	71	112	97	84	118	87	115	56	130	86
CGCATCAGTCATTATT	alt_2645_negative	42	85	41	44	78	45	81	47	77	36
GGTTGGCACAGCTTGG	ref_2645_negative	8	17	7	15	10	8	18	9	23	7
CTAACCGTGCCTCTTC	ref_2645_negative	31	40	48	28	64	33	35	34	46	36
AAGCGTTGTTGTCATG	ref_2645_negative	5	5	3	5	3	9	7	3	7	3
CGTGTTTCCGTGTATC	ref_2645_negative	14	43	22	27	35	17	45	12	53	19
GAGGTTTGGCGTAGCA	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
ATACCCATGCATGTTA	ref_2645_negative	12	17	13	9	19	13	12	11	7	6
TTTGAGCCTATGGCGG	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
TTTCGTATCGTCATCT	ref_2645_negative	0	0	0	0	0	0	0	0	0	0
TTGTCTAGCCGCTGTC	ref_2645_negative	14	22	19	15	17	8	31	10	23	15
TGTTAGTCTCAAAACT	ref_2645_negative	85	132	81	94	128	100	126	58	147	64
GAAGTGCCATGGCCCT	ref_2645_negative	17	12	8	13	11	6	11	9	19	2
CACAACGCTTTCGGTA	alt_158_fdr	64	55	83	65	45	60	60	63	55	62
ATATCCGTAACAAAGT	alt_158_fdr	68	39	69	62	38	63	37	64	57	60
ATTTGTAGCAAACCGT	alt_158_fdr	28	20	28	25	18	13	16	21	14	25
TAGGTACTGTAATACA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TAATAGGGCATAACAA	alt_158_fdr	9	5	15	18	5	12	8	18	15	6
CATCCGTCAAGTGCGC	alt_158_fdr	140	99	187	158	149	131	108	147	126	135
CGCGACTAAATGATCC	alt_158_fdr	4	3	14	7	6	8	4	17	3	8
TGCTCTCGTGTGGTTT	alt_158_fdr	8	9	16	16	8	11	9	15	16	17
TCGGCTCATCGGGCCA	alt_158_fdr	45	26	54	32	26	45	35	37	19	27
CTGTCGCAATTAGCTC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTGGATCCCTTTA	alt_158_fdr	4	7	13	15	10	17	11	5	6	10
GCCTCCTCCTCAAGGG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGCGGTACCAGCT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GGCGGTATAAATAGAT	alt_158_fdr	10	8	14	15	10	8	15	13	7	12
AGGGAGGTCGATACCA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TCTACAGGTAGTTCTA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GGACGTAATAAGAGAA	alt_158_fdr	57	33	76	66	37	57	35	60	30	43
CCGTTTTATTTAAGTT	alt_158_fdr	3	6	3	6	4	2	3	2	6	2
ACTTAGTCGTCCCTTC	alt_158_fdr	17	10	33	17	14	26	17	20	25	26
TTTCTAGGAAAAATGA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTGTTACCTTTGT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GCATGCCCCGTGCCGT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TTTACGCATTCTTCGA	alt_158_fdr	23	22	26	33	21	8	16	18	16	14
TAACAGTCCTTTCGCA	alt_158_fdr	32	18	22	26	17	30	13	17	19	22
AGCGGACGCTAGGTTC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GATAGTCGGTTCTTGT	alt_158_fdr	65	36	65	46	37	59	35	52	40	53
CGCTATGTCATGAGGG	alt_158_fdr	50	28	57	39	42	35	36	40	29	39
CAGCGTTCAGTATGTT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TACTGACTGGGTTGAT	alt_158_fdr	0	2	0	1	0	0	1	0	0	0
TCCAGGCGTACGAGAG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGAGCTCTGGTTA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GATTCTCATTGTTTTT	alt_158_fdr	84	33	91	90	41	77	34	79	46	55
ATTCCCTAAGGTGGAC	alt_158_fdr	29	22	41	43	21	21	14	21	26	17
GTCACAGGGGCCCAAA	alt_158_fdr	7	12	8	11	18	8	26	8	14	6
CGTAGCTATTCTGTCA	alt_158_fdr	186	127	207	197	126	152	126	190	125	160
TAATGCTGGGGGATCT	alt_158_fdr	57	39	79	84	31	69	43	70	39	59
CCAACTTTTCTCCTGG	alt_158_fdr	13	12	10	9	13	11	11	9	6	14
GGTAACCAGTTGGTCT	alt_158_fdr	48	33	61	47	28	51	40	46	35	50
TGCTTTGTGAGTAGAT	alt_158_fdr	22	17	33	25	21	30	19	28	20	22
TGCAATTTTGTGGCTT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
CACTGAGACGGCCCCC	alt_158_fdr	35	24	39	36	26	34	25	29	40	23
GGGATCCGCTTTCTGG	alt_158_fdr	11	8	14	16	6	8	11	16	5	7
TGACTACCCTGGAAGC	alt_158_fdr	86	45	96	67	52	66	49	52	47	65
CGTCTAATCATTTTGC	alt_158_fdr	72	79	80	86	82	95	76	91	89	74
CGTCCGGAATCCGCCT	alt_158_fdr	3	2	3	1	3	3	0	0	0	1
GGGGCTCGAACATTCG	alt_158_fdr	24	9	26	22	13	24	15	26	9	28
TTTCTTTGGTCAGATT	alt_158_fdr	84	51	83	72	41	70	58	57	44	67
TACACTTTTTGTTGTA	alt_158_fdr	79	37	75	56	52	75	39	63	40	65
TAATTCCAGGATAACG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTTTCTCTGAGAA	alt_158_fdr	90	60	73	83	36	62	46	74	52	68
TGAGACTTCTAGTCCT	alt_158_fdr	43	47	82	56	33	50	39	36	32	39
TATAGCATCTGATCAG	alt_158_fdr	1	0	1	0	1	0	0	0	2	0
CGTTAGAGCCCAGCAG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGGGTCTCTAGAG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTCCGAACCTCC	alt_158_fdr	112	64	137	98	48	87	62	98	57	84
GTTCCAAACTGTTTCT	alt_158_fdr	259	186	299	276	149	250	157	247	166	246
ATCACTGGACAGTTCG	alt_158_fdr	56	37	71	70	35	64	49	66	54	56
TCAAGTCTGAGATCAT	alt_158_fdr	0	1	0	0	1	0	0	1	0	0
GGTTGAGTCTAACACA	alt_158_fdr	81	64	91	59	69	58	76	75	74	49
ATAGGGAGGGTCCGCC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGCCTGATACGGC	alt_158_fdr	41	65	25	21	65	21	61	22	75	19
TCAGCGACCGTAGCCT	alt_158_fdr	145	140	180	152	147	139	144	146	146	110
CGCTCCATTCGTTTTT	alt_158_fdr	27	17	25	27	14	19	20	21	17	17
CTTGTCACACCGCCGG	alt_158_fdr	5	3	15	4	5	12	5	8	10	5
CACGATTGTACATCCG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GTCTATGGGACCGTAA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
AAAGTATTCCAAGAGT	alt_158_fdr	18	9	27	22	11	17	17	26	19	27
TCTGAACAGAGCTTTT	alt_158_fdr	277	186	324	294	148	232	170	233	240	210
TTCGACCGCGACCCTC	alt_158_fdr	38	27	52	40	37	40	30	41	23	37
GTGGTACTAGGCCGTG	alt_158_fdr	62	33	73	58	43	57	49	69	42	53
GATAGATGGTAGCATA	alt_158_fdr	1	0	1	0	2	0	3	0	0	1
TACCTCTGGTTCGACG	alt_158_fdr	123	72	130	108	72	113	104	129	78	84
GGACATACAGCTACAC	alt_158_fdr	52	28	64	63	35	32	32	46	23	35
TCGGTCGCCCACCTCG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCTCAGTTAGCTG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
CACACTATTTCGCACA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
ATCTATAAGTTCATCC	alt_158_fdr	132	76	133	137	58	122	80	123	62	89
TCAAGATGATCCGTTT	alt_158_fdr	10	11	23	18	6	13	13	10	10	9
AGTGTATGGGCCCCGG	alt_158_fdr	65	40	73	72	45	56	38	71	40	54
CTATGGGTCGTGCGCA	alt_158_fdr	32	24	63	46	26	35	22	46	30	33
ATGCCTGCGAAGTACT	alt_158_fdr	272	150	289	232	180	224	199	231	219	233
GTCGGAAGATACCCCC	alt_158_fdr	48	26	61	45	37	36	43	28	30	38
TCACCTATAGTTTTTC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTCAATTTAGGGT	alt_158_fdr	79	73	118	100	69	85	80	89	63	90
TTGTACCTATGATTAG	alt_158_fdr	20	19	27	26	19	24	20	26	24	22
GCGGAGTAACCCTTCC	alt_158_fdr	35	18	36	31	17	34	17	30	26	23
CCGTTTCCCCTGGAGA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCATATGGTGCTT	alt_158_fdr	53	48	81	62	50	46	47	58	59	45
TCGGTAACTTTTGGTA	ref_158_fdr	283	187	311	258	223	245	205	269	213	228
GCACCGTGCGATCGTT	alt_158_fdr	3	1	8	4	7	4	5	8	2	1
TTATTTTATTTCTTCT	alt_158_fdr	40	26	45	46	29	30	17	34	26	39
AACTCAGAGGCTAGTG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTTCTTCTGGGG	alt_158_fdr	158	87	168	153	77	114	98	128	104	149
GTGGGGCTCCGCAGTG	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTAGCAATATGTT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGTTGCCCGTAGC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTCCAACTTCGT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTGATTCTTAATT	alt_158_fdr	20	10	37	21	15	18	12	22	20	21
TAAGTCTGAGTGTTCC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTCATCTCCTGC	alt_158_fdr	0	0	2	2	1	1	1	1	1	0
GTGCAACCCGTTCAGG	alt_158_fdr	71	50	83	68	43	53	56	62	52	60
GCCATCTGTTCCTCCT	alt_158_fdr	0	2	3	2	5	1	2	1	7	1
GCTTTCTCTTTATCTC	ref_158_fdr	41	25	55	44	19	40	25	26	17	31
GAGACGCCTCTGATGC	alt_158_fdr	61	43	54	54	36	52	36	43	43	43
AGCGCATTGCTCTGAT	alt_158_fdr	38	26	56	40	38	42	32	33	29	36
GCACAGGCGGAATGGA	alt_158_fdr	22	23	30	21	22	20	14	14	16	9
TAACTTTTCGTAATAA	alt_158_fdr	6	4	5	10	6	4	4	5	3	5
AGTACTTATTTCATTT	alt_158_fdr	66	41	66	97	45	87	51	63	59	73
TGGCCTCTTGATAGAA	alt_158_fdr	223	176	318	264	153	255	181	219	233	218
TCTGAATGATTTTCGC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
TATTTCGTGGAATAGT	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
ACACCTGCCTGGTTAG	alt_158_fdr	61	57	70	78	43	49	60	50	68	57
GCGAGAAGCGTCAGGC	alt_158_fdr	25	25	34	25	22	35	20	21	14	29
GTGCTCGCTGTTGCAT	alt_158_fdr	22	23	35	31	23	31	29	21	28	28
TCTTTAGTGGGCCTCC	alt_158_fdr	105	68	150	125	68	107	79	112	68	88
TTTTATCATTCGGCAA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTTTTGCGTTGAA	alt_158_fdr	38	23	32	31	17	39	12	25	17	20
TCATTGTTTCTTTACA	alt_158_fdr	7	5	16	9	4	9	6	6	4	12
AGCCCACGCTCCTTAG	alt_158_fdr	113	81	146	116	89	112	95	127	86	92
GTGGAGCTTTCTTTTT	alt_158_fdr	240	135	286	250	122	198	154	183	174	210
GGGTCAAATTAACAGA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGTCTCCAAGCGC	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
ACTCAGTTTCACTGTT	alt_158_fdr	36	22	48	37	34	38	46	39	36	35
CAATTTGTCGGCCTAC	alt_158_fdr	15	15	29	27	20	21	17	19	23	18
ATATGCCCTTAACGGA	alt_158_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTCTAAGCTGGGG	alt_158_fdr	26	24	37	34	22	19	21	25	21	29
ATACTCATGACGTTAC	alt_158_fdr	27	22	40	28	13	24	17	18	22	19
GTGTATATCTACTGGT	ref_5666_new	5	8	9	6	4	9	12	6	7	4
TCTCCAACTATTGCGG	ref_5666_new	0	0	0	0	0	0	0	0	0	0
GCCCTCTATTGGAGCA	ref_5666_new	0	0	0	0	0	0	0	0	0	0
GTTTGCCTGGTTGGGC	ref_5666_new	17	47	36	23	43	31	32	20	46	31
TGAGTGCCGATCAACA	ref_5666_new	32	47	38	28	42	34	49	42	46	24
TGTATTGCACCGCACG	ref_5666_new	32	38	32	36	47	32	49	24	51	29
ATGATCAACATAGTCT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
GTCTCTCAAAAGCCCA	ref_5666_new	6	13	10	11	18	17	18	12	8	2
ATTGCAGAACTCACCA	ref_5666_new	31	60	38	46	70	29	54	42	73	32
CATCGTGTACCCCTCC	ref_5666_new	24	50	39	36	50	27	62	30	50	43
CGATTCGGGTTATCCT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
TACGTCCTGGGGTGCG	ref_5666_new	9	10	8	10	8	8	13	11	8	8
CGGCCTTGGGTTTACT	ref_5666_new	27	67	41	47	78	20	71	36	65	17
GTGTCTTACGCCATCT	ref_5666_new	17	21	15	17	25	13	28	8	18	10
GTACATCAGTACTTGC	ref_5666_new	32	50	29	36	66	26	40	30	54	24
ACAGCAGCGTACTATG	ref_5666_new	6	9	1	11	8	5	13	5	13	7
CTACCGAAGTAGTCCA	ref_5666_new	20	25	17	14	17	9	31	17	27	16
ATTAGGTGGTTGAGAA	ref_5666_new	27	30	14	11	23	18	26	20	41	22
CGGTTTGACTGGTGTC	ref_5666_new	3	9	5	5	10	3	7	3	6	5
GCCAGACGAGAACTTT	ref_5666_new	26	49	42	26	47	32	40	38	41	45
CAGCTGCCACATCGTA	ref_5666_new	43	64	28	36	70	33	57	34	72	24
TACCTGTTGGCCGTCC	ref_5666_new	1	9	3	7	9	5	4	4	3	4
CCTCCATTCGTCATCG	ref_5666_new	0	0	0	0	0	0	0	0	0	0
ACGGGTCTCATTGACA	ref_5666_new	5	3	9	2	2	5	3	1	5	1
CGCTTGTCCGTCCTCT	ref_5666_new	11	10	4	9	10	4	5	13	8	5
GTCTGGAGAGCGCAAG	ref_5666_new	8	8	6	5	10	4	8	9	14	3
AGGGACAGTATTCAGC	ref_5666_new	10	13	12	8	11	6	21	11	16	5
TGCCGAATTTAACTAT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
CGGAGCCAAAGTTTTA	ref_5666_new	31	32	41	25	36	14	47	33	42	17
GTACCGAAACTTCCCA	ref_5666_new	0	0	0	0	0	0	0	0	0	0
CGCTTCCGTCACTGGC	ref_5666_new	0	0	0	0	0	0	0	0	0	0
TGATAGGCTTGTTTTT	ref_5666_new	19	22	25	15	21	20	29	13	16	12
TGATGTTTCCTTCTTT	ref_5666_new	71	79	90	79	92	80	90	48	79	79
GCCATTTTAACTCAGT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
ACGGTGTGCATTCGGA	ref_5666_new	6	5	9	2	6	11	4	7	8	8
GTAACGAGTGCTTCTT	ref_5666_new	19	23	23	12	13	14	18	15	16	16
AGTTTCTTTTCTGCCT	ref_5666_new	36	43	33	23	35	21	48	26	50	12
GCGGCACGTTGTGTGA	ref_5666_new	15	38	40	21	34	30	44	21	32	9
TTCTAACACGAGATAC	ref_5666_new	74	107	86	82	100	74	104	77	110	59
CTTTGCCCGCAGTTTG	ref_5666_new	7	14	9	10	26	11	25	10	19	11
TTCCTCTCAGACGGAT	ref_5666_new	95	114	133	101	112	93	135	59	144	86
GTTTCGACCCGACCTG	ref_5666_new	15	28	28	17	51	19	41	26	26	22
GTTCTTTTTATAGGGT	ref_5666_new	8	8	12	4	11	9	11	8	13	5
CTCGGATGCGTCTAAT	ref_5666_new	52	65	49	34	76	37	76	47	78	32
CTACTTTGGGAATACA	ref_5666_new	0	0	0	0	0	0	0	0	0	0
TCAACGATGTCTGTTT	ref_5666_new	7	11	9	10	11	11	17	10	14	5
GTCAGCATCTGTGGGG	ref_5666_new	7	30	22	15	24	12	32	11	37	9
TAGAAAAATCAGTTAG	ref_5666_new	13	49	26	25	45	23	35	26	33	29
ACGGCTAAGAACAAGA	ref_5666_new	14	25	23	17	21	20	30	19	23	13
TTTCCGTGCGTTACGT	ref_5666_new	36	91	51	56	85	46	60	47	66	45
AAGTCAGACCCAATAC	ref_5666_new	25	40	28	21	32	29	32	34	63	20
CGGCATGGTCTGGATT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
GTATGAATGTGTTATT	ref_5666_new	39	104	68	56	87	53	81	47	68	57
ATCGATACTGTGTGTC	ref_5666_new	27	41	30	35	41	24	48	32	48	24
TACTGATCAGTACTGA	ref_5666_new	6	10	10	7	4	6	5	3	12	7
ATGCAAGACTTTTGTC	ref_5666_new	50	65	47	38	67	36	67	43	52	65
GCCGAACCCGGCTCGT	ref_5666_new	87	128	83	97	176	90	158	92	142	94
CCCCATTATGTTGTTT	ref_5666_new	13	24	10	13	13	15	21	14	21	13
AGCGTATGGTCCCAGT	ref_5666_new	2	2	2	2	3	2	3	3	2	2
ATCTTAGGGCGCCGAT	ref_5666_new	8	9	10	5	11	11	8	2	8	5
GCATGCTCTAACGTTT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
CATGTGGACTTTCATC	ref_5666_new	26	71	37	42	61	40	51	32	61	38
GACTCGTCCCAGCTAC	ref_5666_new	26	27	42	19	34	28	37	25	39	22
AGCCACTCCTTATGAG	ref_5666_new	0	0	0	0	0	0	0	0	0	0
TGCGCCTCCACCCACC	ref_5666_new	0	0	0	0	0	0	0	0	0	0
GATGTTCTCCGATCAT	ref_5666_new	21	42	40	25	42	41	42	45	41	34
ATGTTCCATAAGAGAA	ref_5666_new	7	6	5	9	6	9	7	1	8	4
CTTACACGATGGTTAT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
CGATCAATAGCACTTC	ref_5666_new	0	0	0	0	0	0	0	0	0	0
CTAGGTCCTTCGATTG	ref_5666_new	0	0	0	0	0	0	0	0	0	0
TAACACTATATTAAGC	ref_5666_new	48	69	54	47	76	50	71	38	76	51
TATTGCCTTGATTCCA	ref_5666_new	26	27	23	24	20	17	18	16	35	18
GAACACCGGGTTGCAT	ref_5666_new	94	139	109	93	156	90	143	97	152	82
CACCGGGTCAGCTACA	ref_5666_new	11	19	14	14	13	15	17	7	24	6
GTAATCTTAATGGGGT	ref_5666_new	23	42	28	28	23	21	21	27	35	32
TCTGTACCGTCTCTCG	ref_5666_new	9	12	12	5	12	6	15	5	9	12
GCTCTTAACGGTGCCA	ref_5666_new	152	211	170	162	256	159	255	139	276	145
GTAGTTCAGGCCATGC	ref_5666_new	11	25	23	17	40	16	24	22	20	5
TGGGTTTCAGGGTATT	ref_5666_new	0	0	0	0	0	0	0	0	0	0
GAGCCACTTAGGCATG	ref_5666_new	18	10	23	23	26	12	22	19	32	11
TGGTTTTTTATGGGGA	ref_5666_new	10	21	19	14	25	12	23	12	18	9
TGATCGGTTCCGAGTT	ref_5666_new	9	14	14	11	13	8	7	11	17	7
ATCCGTTTTTCATCGC	ref_5666_new	17	28	12	14	16	13	16	8	13	6
TCACCGACCTATCAAC	ref_5666_new	4	16	6	10	22	5	21	8	23	8
GTGATCTGATACCTTC	ref_5666_new	0	2	2	2	0	1	4	2	3	7
TGTAGGGTACTTACAA	ref_5666_new	7	18	9	13	16	6	24	8	23	4
GTGGATGATTCCCCAT	ref_5666_new	3	7	12	7	10	10	11	2	11	3
ACGCATATTTTGTACG	ref_5666_new	0	0	0	0	0	0	0	0	0	0
GACGAGTAGGGCCTGT	ref_5666_new	7	9	5	8	10	9	10	8	7	9
GCCGCCTGTGGTTCGG	ref_5666_new	0	0	0	0	0	0	0	0	0	0
TCGTTTCCCGGATTGA	alt_2984_missing	47	34	55	46	29	49	32	50	25	35
AAAGGTACTTCGCGTT	alt_2984_missing	95	52	101	81	46	100	67	89	76	84
CGGGCCGATTTACCGA	alt_2984_missing	11	5	8	7	5	4	4	2	4	6
CATGTGATGAACTCAG	alt_2984_missing	62	56	82	64	45	69	35	58	35	46
AAACCATCTCGCCACC	alt_2984_missing	36	27	42	42	37	38	25	28	27	40
ATACGTATTCATAGTT	alt_2984_missing	22	21	44	29	21	21	17	22	25	25
TGACTCTTACCTACGT	alt_2984_missing	58	53	62	54	58	39	65	50	73	35
GTTTGTTGAGAGTTTC	alt_2984_missing	0	0	0	0	0	0	0	0	0	0
TTACGCTCTACTTTAA	alt_2984_missing	0	0	0	0	0	0	0	0	0	0
GGTCTCGCCATGGTCG	alt_2984_missing	110	58	136	89	59	78	46	90	76	88
ACAGAATGATCCCGGT	alt_2984_missing	24	10	45	34	11	28	19	31	16	31
CTGTAGATCTGTCGTA	alt_4632_RC	13	10	13	7	13	18	20	3	17	13
TAGTTCCGTCTCCTCT	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TATTCGTAAGCAGGTC	alt_4632_RC	197	178	235	204	226	175	245	206	224	159
AGCTTTAGGAGTTCAC	alt_4632_RC	15	14	12	9	16	23	19	11	14	12
CATTATTAAACGGCTA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TTACGTTTAATAGTAG	alt_4632_RC	47	58	63	39	50	65	54	31	59	41
AAATAGTGCTTATTGT	alt_4632_RC	10	13	17	9	9	15	20	13	12	15
TTTGACTTACAGAATC	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GTGTTCTACGTTTTTA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TGTACCCTCCTTCGTG	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
CTCCGCCCCATTGAAG	alt_4632_RC	17	28	24	26	29	15	26	9	23	18
TAGCCAGAGGAGTACA	alt_4632_RC	15	26	26	22	26	22	29	26	37	21
AGCGCATCTAGAACAG	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GCCACCTTAATCTTAA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TTCCCATTGCGACCCG	alt_4632_RC	8	7	11	10	9	4	1	0	19	4
TCCACTTCATAAAGGC	alt_4632_RC	30	24	33	20	32	22	16	21	28	22
TTAAGACGATAGGCAG	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCGCCTATGTAT	alt_4632_RC	19	19	29	24	27	16	25	14	19	14
AGATGTATCACCTTTG	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GTGCATGTCTTCATAT	alt_4632_RC	12	23	19	12	25	12	17	12	24	11
TTTGATTATTTAGATG	alt_4632_RC	94	116	119	95	122	82	121	78	126	69
TTTCAATCCCTCTGCT	alt_4632_RC	18	21	22	19	21	20	15	10	15	16
TCCCTAGGGTTTTTAG	alt_4632_RC	97	106	112	99	132	106	130	94	108	100
TAGGTCTGCTCAATCA	alt_4632_RC	36	26	41	31	47	34	51	35	58	33
CTTGTTGATCCTGGAA	alt_4632_RC	10	17	15	14	15	16	13	12	17	12
ACCGGGCCTGTTGGTC	alt_4632_RC	56	85	62	40	84	49	75	50	70	53
TGGCTTCGTTGAAACA	alt_4632_RC	14	24	28	15	29	13	30	6	24	17
ATTCGCGTGCGATGGA	alt_4632_RC	43	30	32	39	29	23	28	33	40	25
CTCTATGCCGGATGTC	alt_4632_RC	11	20	22	23	18	19	14	16	12	11
TTTTAGTACGCTATGC	alt_4632_RC	41	49	60	40	50	40	63	50	52	43
CTCCGGTTACAATTTT	alt_4632_RC	49	46	41	50	49	44	39	45	57	44
ATCAGAAGTTTTTTCC	alt_4632_RC	66	52	77	57	65	52	68	58	58	43
TACGCCCTGTAGTCTC	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
CTGTCGCCGATTGCAA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TGGGGTCCCGCTAGGT	alt_4632_RC	38	31	40	48	32	45	28	26	41	35
AGCCACCCCGACGTCA	alt_4632_RC	3	3	2	0	1	5	1	3	0	0
GTACCGTTAAAACATC	alt_4632_RC	26	27	43	30	31	29	30	27	33	24
CTGGCTTTTCCGAGTC	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TTGCATCTCAAAGAGC	alt_4632_RC	33	42	47	33	55	30	42	23	38	35
ATAGCCGCTGCATTGA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GAAGGGCTTCTGGTTA	alt_4632_RC	24	25	30	34	24	26	25	29	33	26
TTCTGATTTTTTCGCT	alt_4632_RC	57	53	48	42	57	53	60	50	57	47
GATCCCAGTATATGCA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GGGAAGCGGGTTTACA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
ATTCGAGTATCAGCTC	alt_4632_RC	4	11	8	8	14	9	5	13	11	5
ACACTGATGATTTAAT	alt_4632_RC	21	7	11	10	23	14	16	19	22	15
TAAATCAGATCCCGAT	alt_4632_RC	10	16	25	12	22	10	11	8	23	15
TAGCTCGTAGTTTATC	alt_4632_RC	23	51	41	38	43	36	53	39	48	38
CATGCCGCTTACTTCT	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GCGGTATGTTTTTTGG	alt_4632_RC	141	155	155	125	149	133	167	134	157	121
CATTTAAAAGGCAAGT	alt_4632_RC	33	69	53	42	37	46	70	42	50	44
GGTTAGGCTTATTGCG	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TATAATAATTTGTCCA	alt_4632_RC	64	59	63	65	83	59	81	50	96	56
CTGTGCCCGAGGGCAT	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
TTCATTGCGTTTGAGC	alt_4632_RC	5	1	2	3	0	1	2	4	0	2
CTCTTCCGTAAAACAA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
CTCGATCGTAATAAAT	alt_4632_RC	8	6	17	10	15	10	15	6	22	9
GGTGGCATGGGGGCTG	alt_4632_RC	32	46	47	45	39	39	45	49	44	52
ACTGGCAGGGTATATT	alt_4632_RC	24	27	37	18	23	25	21	35	24	23
TTGAGAGGAAAAAGTA	alt_4632_RC	52	49	46	35	56	26	52	50	52	42
CGTTTGGCTCCACTGA	alt_4632_RC	74	54	72	57	64	57	68	63	64	57
TGTGAGTGGTCTCATG	alt_4632_RC	7	10	15	9	9	11	15	9	14	12
AACATACCCCCCAACG	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
AGGTAGTTTCGTTTCG	alt_4632_RC	152	135	180	149	142	176	135	162	118	146
GGCCTTCCCCATCTGG	alt_4632_RC	17	15	22	11	28	13	19	13	24	15
TTGTTCCATTTGGCAA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
CCCTCGTGTCAGTATG	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
AACCAAGTTTATCTTG	alt_4632_RC	63	76	79	66	90	73	100	55	99	55
CTAACCCGTCCTGAAA	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GCATCCCGCGTAAACC	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
CGGCGGTCGATGCTTA	alt_4632_RC	11	12	15	6	10	10	6	5	15	9
TCCATCCCCCATTGTC	alt_4632_RC	61	88	85	81	70	66	71	59	76	46
CACCATCTATGTCACA	alt_4632_RC	7	12	18	5	18	7	16	6	21	10
GCCTCGCTACCGGTCC	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
GTTGTAGGACATAACC	alt_4632_RC	56	58	60	55	59	50	70	47	75	44
TGGTCCCATCTTACCC	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
CGTATTGCTTTTGTTT	alt_4632_RC	23	20	28	23	27	21	37	30	28	20
AGCCATTCAATCACAC	alt_4632_RC	30	48	33	37	45	29	48	33	55	25
TTCTTCACAGTTGATC	alt_4632_RC	0	0	0	0	0	0	0	0	0	0
CTCGATTTTTCAATTT	alt_4632_RC	87	118	101	101	110	78	106	97	110	80
GCAAACTATTTACCGG	alt_4632_RC	20	11	18	13	15	12	17	7	13	15
TCCTACAGGCGCTGAA	alt_4632_RC	10	23	18	17	18	13	24	17	15	9
GGGTGGTCGTTTAAAC	alt_4632_RC	25	39	58	32	33	41	53	20	59	40
CACTTGTGGCGTTATT	alt_4632_RC	1	0	0	0	0	0	2	0	0	0
TACGGATCAGCTATAG	alt_4632_RC	81	100	100	88	101	78	95	75	98	74
CGTCGCGTCGAGTCGG	ref_5663_new	0	0	0	0	0	0	0	0	0	0
ATGGCGTAGTAAGCTT	ref_5663_new	41	48	36	37	55	28	53	16	73	23
TCGCATATTATTAGAA	ref_5663_new	48	87	66	43	81	50	97	30	97	40
CTTCACATGTACGTTA	ref_5663_new	0	0	0	0	0	0	0	0	0	0
GATTATCGTACGTCAC	ref_5663_new	0	0	0	0	0	0	0	0	0	0
ACGCCTCTAAAGTTCC	ref_5663_new	52	212	67	74	234	62	228	61	256	48
TCAGTTCGCGACCTCG	ref_5663_new	2	8	1	4	8	2	3	4	6	3
GTACTCTCCTAAGGCT	ref_5663_new	6	41	3	6	38	8	39	7	43	3
CATAACCTGCAGAAGC	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TCCGATAAAACAAGGC	ref_5663_new	24	37	19	29	39	30	41	18	46	16
GCACCGTTAAAAGCCC	ref_5663_new	9	22	12	14	22	16	22	11	14	8
TTAATTTAAGCAGAGC	ref_5663_new	26	41	23	14	51	27	48	28	44	15
TTGATTCCAAGGTTGG	ref_5663_new	13	18	16	12	34	9	20	12	29	16
AGGATTACATTGTGGG	ref_5663_new	20	16	8	15	20	15	35	10	36	8
CGCCCCCTCTTATTGT	ref_5663_new	41	105	37	40	97	23	114	40	107	23
TCGTATAGCCTAGCAC	ref_5663_new	3	19	5	6	12	5	16	4	10	5
GTGCTGGATGGCTACG	ref_5663_new	5	27	15	8	5	11	21	12	25	7
CGTGTTTATCTGGGGC	ref_5663_new	7	13	6	6	16	2	13	1	11	4
TGAACAGGACAGCTCG	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TCGGCATCCCACGCTC	ref_5663_new	10	11	10	7	19	8	17	4	14	13
CCGACTCTCCATCTGG	ref_5663_new	4	14	1	2	16	6	10	1	12	5
ATGGGCCCGCGAGATA	ref_5663_new	6	19	18	9	19	11	20	11	27	13
ACCGAAGTCCAGCAAA	ref_5663_new	9	13	0	5	5	0	15	1	20	9
TAGTCAGTGAAAGCTC	ref_5663_new	0	5	1	0	4	1	2	0	1	0
CAGAGTTCCCTCTCGT	ref_5663_new	2	9	3	1	5	1	6	1	12	1
GGTTTCACGAATTTGT	ref_5663_new	19	34	20	16	30	15	42	19	43	12
CTGTCGTGAGACTTCT	ref_5663_new	4	11	4	3	20	8	6	3	5	2
TATAGCCATTTGAGAT	ref_5663_new	10	28	15	11	21	14	19	5	17	6
TGTCGGTTTCCTTCTA	ref_5663_new	6	19	7	11	17	13	18	9	20	9
GGAAATAGTTTTTCGG	ref_5663_new	5	10	2	0	4	3	7	4	6	1
AGTGCGCGCGTCTCGC	ref_5663_new	26	32	28	28	42	18	47	17	43	21
TTTGGGCCTGTGAAAT	ref_5663_new	25	40	39	13	34	30	49	21	68	15
GTGTTAACGTACCACC	ref_5663_new	14	34	10	15	26	8	33	8	33	10
ATATACGTTGCTCTAG	ref_5663_new	0	0	0	0	0	0	0	0	0	0
CGGATTAAATTCATAT	ref_5663_new	4	3	1	4	0	2	2	1	5	1
GATGACGCTGTCTGCT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TAGTTGTTTTAATATC	ref_5663_new	15	45	25	20	22	10	35	12	40	15
AAGAGTCCTGTATTTG	ref_5663_new	48	89	50	42	104	48	88	41	101	29
CGAAGGCTGGCTACCA	ref_5663_new	6	14	13	7	11	6	11	6	15	9
GCTTATTGGGGAGAGT	ref_5663_new	16	25	9	13	22	6	24	8	22	5
AGAGTATGTCTTTACT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
CGAGGCACTCTTCTGT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TCCCCTCTCTTACTAT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
AGATTACCACTGTAAG	ref_5663_new	0	5	0	1	0	0	5	2	3	1
GATTATCTTTTGCCGT	ref_5663_new	17	32	28	23	32	30	39	17	30	17
TTTAGAGGGTTGACCT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
CGTGGAAGTATTTTGA	ref_5663_new	27	50	45	28	48	20	54	25	49	20
CATTATCGTCTGGCGC	ref_5663_new	0	0	0	0	0	0	0	0	0	0
CATTATCGGCTGGCGC	ref_5663_new	1	3	1	1	0	0	0	0	4	0
TTTCATTGCGTCATTG	ref_5663_new	31	44	32	25	49	24	62	8	55	22
AGGTTGTCTTTGAGCT	ref_5663_new	3	13	10	11	12	1	14	3	8	6
GTACTCAGGCTCTTCG	ref_5663_new	16	23	14	13	27	13	29	11	27	24
TACGACAATGCCCCGG	ref_5663_new	10	27	4	7	40	5	25	4	26	7
TTGTCTCCTATGGTTA	ref_5663_new	10	7	9	4	12	2	16	3	22	10
GATCCTATTGGGTTTC	ref_5663_new	2	21	6	1	7	4	10	3	11	4
CGATTCCTATATTTGT	ref_5663_new	36	69	29	49	86	34	85	36	75	30
TCGCGCATACAGCTGA	ref_5663_new	0	0	0	0	0	0	0	0	0	0
CATTTGTCTGTCCCGC	ref_5663_new	31	78	43	41	58	37	75	31	72	22
CGCAAAGTCATGAAAT	ref_5663_new	9	10	7	1	11	4	6	5	9	3
TGGTAAACGTAACTTT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
CCCCCTTAAACTCGCC	ref_5663_new	23	85	29	16	94	11	91	23	81	25
ACTTTGCCTCAGACCC	ref_5663_new	1	2	1	3	1	0	2	2	1	0
GGTTCGGAGAGGACGA	ref_5663_new	31	46	29	12	50	24	54	18	49	24
CTCGTAGTACGCTACT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TGTTGTATGCAAGTGA	ref_5663_new	11	39	16	17	37	11	33	14	39	13
GGGTCACAGGTATCCT	ref_5663_new	0	3	0	2	1	0	1	1	2	2
CACGAACGTAAGAAGC	ref_5663_new	5	10	7	3	6	3	12	5	11	3
CCGGGGCAGCTCGGCC	ref_5663_new	20	59	20	6	68	13	70	20	61	17
TTGGCAATACATCGCC	ref_5663_new	2	11	5	3	7	1	16	6	4	1
CACCCTTTTGGATGGG	ref_5663_new	35	76	43	41	84	48	85	38	92	41
TTCAATTGACCCCGTC	ref_5663_new	14	34	19	16	38	13	35	12	45	15
GTGTTTGATAGACTGA	ref_5663_new	0	0	0	0	0	0	0	0	0	0
CCGCTTCAAGTGCTTA	ref_5663_new	0	2	0	0	1	0	0	0	0	0
TTACGGATGACGACAT	ref_5663_new	65	109	81	72	144	67	159	68	151	70
CTATCAGGAGCTGCTT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TGGCACGACGATGCAA	ref_5663_new	2	1	0	1	1	2	6	4	6	1
GCTCGAATTCCGTTAC	ref_5663_new	24	77	45	32	89	24	73	31	73	27
TTTGTTTTTGAAAGTG	ref_5663_new	0	0	0	0	0	0	0	0	0	0
AATATCCTTATGAAGT	ref_5663_new	4	10	8	3	5	7	4	6	9	3
ACTCCTAAGGGGGGGT	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TGACTTACGATATATG	ref_5663_new	17	55	28	22	67	19	64	15	66	15
CGATACGACACTTCGG	ref_5663_new	0	0	0	0	0	0	0	0	0	0
TTAGAATGCGTGGCCT	ref_5663_new	10	36	27	18	39	14	39	22	26	18
TTTTTATGGGTGGTGG	ref_110_fdr	5	8	4	6	10	6	15	2	5	2
GTTATCACCCCTCAAA	ref_110_fdr	14	22	15	14	30	16	37	13	39	19
CCGCGTTCCCTGGCGG	ref_110_fdr	18	50	37	21	61	18	49	25	73	20
TAATCCTGGGAAACTT	ref_110_fdr	15	27	21	17	48	18	26	24	46	13
GCAGCTAACCTAAGTC	ref_110_fdr	32	61	31	26	54	22	53	34	48	21
TGTCCTCCAGTTCCTT	ref_110_fdr	30	70	46	35	73	26	69	33	77	31
CTCATAGTTCAGCTTA	ref_110_fdr	38	127	37	37	113	41	121	39	130	32
GTGTTGCTAAGATCGA	ref_110_fdr	1	3	3	3	10	2	7	5	3	1
GGGCATTCGTATGAAA	ref_110_fdr	5	9	9	5	8	3	6	3	12	1
CCGCGAGACTACTAAC	ref_110_fdr	4	11	7	3	10	7	15	1	9	5
CGCGAATCTGAACTCT	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
AGTACTCACTGGGCTT	ref_110_fdr	15	25	11	12	25	11	29	11	33	23
TACCCATTTCTGCACC	ref_110_fdr	16	11	12	8	25	7	20	5	25	12
TAGGTGTAATAGTTTT	ref_110_fdr	1	12	5	3	10	9	8	2	10	3
CATGTGTTGCGGAAGC	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTACGTTTCCTC	ref_110_fdr	42	95	77	45	120	43	86	60	91	38
CATGGGCGTAGAGGCT	ref_110_fdr	36	56	27	33	66	36	55	24	51	32
AGCGGCGTCCTCTTGT	ref_110_fdr	55	111	73	68	91	83	127	55	94	53
AAGTTCGCCTTTACGA	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
GGCACGTAGGTGTTCC	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
ATTGACTGTCTCTGCA	ref_110_fdr	29	82	29	32	82	33	76	32	93	20
GATGTCCGACATCTGC	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGATCCAACCCAT	alt_110_fdr	82	129	96	103	105	80	164	94	140	71
CCACCCCTGGTACGTG	ref_110_fdr	7	45	6	5	31	5	37	4	44	1
AACTGTTATGATAACT	ref_110_fdr	17	37	15	11	32	14	31	16	38	27
ACTCAAGGTTAGCCCC	ref_110_fdr	16	33	20	19	30	15	28	14	31	13
GATTTGGCCTTTGTTC	ref_110_fdr	6	10	4	1	2	6	7	1	7	1
CCCGAAATGCAACTCG	ref_110_fdr	69	108	85	62	144	64	95	62	136	48
CGTTACTTTGCTGTCA	ref_110_fdr	3	6	5	3	12	2	11	16	12	8
GGCGGATTCTCTACGA	ref_110_fdr	25	70	47	30	73	35	80	44	84	37
TGAATCGCAGTTACAG	ref_110_fdr	59	111	64	62	133	43	109	51	139	38
GTCCTTTGTTATTGGT	ref_110_fdr	7	21	4	8	7	5	5	3	8	7
ATACTGTCTCAAGTTC	ref_110_fdr	6	8	9	5	7	1	13	10	19	5
TTCAGGATTACAACGT	ref_110_fdr	12	26	10	14	18	12	36	8	25	10
TTTTCTCTTTATCACC	ref_110_fdr	11	8	12	14	10	6	13	15	4	18
GAGGGATAGCTATCTC	alt_110_fdr	4	7	12	5	5	6	13	2	6	4
TTGGGTCGTGGTCAGC	ref_110_fdr	1	0	2	0	2	0	3	3	1	1
TCGATCCTCTCAATAT	ref_110_fdr	52	92	60	44	70	48	84	29	88	52
ATCTGCTACTTCCTGT	ref_110_fdr	9	31	15	9	33	16	34	17	38	18
ATGCCAGTTGTGTTTG	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAGTAGTGCGCTA	ref_110_fdr	16	23	9	16	25	4	34	6	37	8
GGTCTCTCTGCCAAGC	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGTAGGGCTCAAC	alt_110_fdr	60	117	87	55	98	44	98	52	108	53
GGTTTATCGATTATGT	ref_110_fdr	15	36	14	16	32	10	30	18	28	11
GCGCTTATATAGCTAC	ref_110_fdr	5	14	7	11	16	3	18	8	15	7
GCTAATCTTCAGTCTC	ref_110_fdr	14	38	18	22	31	16	42	13	46	26
GTGCCGTCCCGGTAAC	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGTTAATTTACCA	ref_110_fdr	0	3	1	2	5	6	1	0	5	0
AGGTTCGTACTTGCCT	ref_110_fdr	1	1	2	0	2	0	3	0	4	0
CATACCACTCAATGTT	alt_110_fdr	30	87	53	43	101	36	109	42	95	51
CGGTCAAAACCAGGTA	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
TGCATATCAATGATTC	ref_110_fdr	21	42	25	28	41	16	50	20	45	30
CATATCTGTCAACTTC	ref_110_fdr	8	10	11	8	9	4	10	5	17	5
GTAAACACTGCCGAAG	ref_110_fdr	11	19	9	15	28	14	24	18	25	9
CGCCCGTGGCCATGTG	ref_110_fdr	5	15	5	4	13	4	13	8	15	7
TCGTGTATCTTCGGTG	ref_110_fdr	54	65	55	30	87	46	81	34	93	35
TTGTGTATGAAATAGT	ref_110_fdr	7	15	11	10	17	8	16	12	14	15
CCAATACTTTAGCCTT	ref_110_fdr	12	20	8	11	24	7	29	15	27	9
ATACTAGCCGTCGTCG	ref_110_fdr	10	21	16	1	22	3	18	7	22	3
GGAACGCAAGGGCAGG	ref_110_fdr	3	10	2	13	8	4	12	4	7	2
CGGGCCTTCGGTACTT	ref_110_fdr	2	6	0	4	4	5	1	3	4	1
ACGTTTCCTTTCTTCG	ref_110_fdr	28	35	32	40	61	30	31	36	51	30
CTTGCATAGTCCCTCC	ref_110_fdr	11	16	13	6	20	11	20	10	19	15
CACGCCGTCCTATATG	ref_110_fdr	3	9	4	1	5	9	7	4	16	0
TCGCGGCTCCCTTTGT	ref_110_fdr	14	31	10	12	25	6	25	10	42	8
TAAGGTCCCTAAGGAG	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTCAGGTTTCGTA	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
AACAACCTGCGAGTGT	ref_110_fdr	46	96	67	41	122	37	102	36	100	34
GCCTTCCCTTTTCCCT	ref_110_fdr	16	27	23	13	26	18	33	13	36	13
CTACGCTGCTAATTAC	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGCTGTCCTAATT	ref_110_fdr	11	36	10	3	36	11	34	8	29	8
GGCAATCGTCTTTATT	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTGCTTTTCACCG	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
TACGTAGTTTGTCTGA	ref_110_fdr	24	32	22	17	27	19	40	15	43	23
ATTTTGGTAATAGCAT	ref_110_fdr	20	39	23	15	35	11	29	20	27	14
ATAAAAACTGAATACG	ref_110_fdr	0	0	0	0	0	0	0	0	0	0
ACGTATAGGTCTTTAT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGATCAGACTCCG	ref_5492_upstream	28	43	41	24	45	27	31	22	31	14
GCATTTGCTTGAGCCT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GCGATGTGCGCAGGAA	ref_5492_upstream	16	38	17	22	22	24	23	22	17	18
CCGGTTGCCCTATTCG	ref_5492_upstream	10	119	13	17	120	7	115	8	116	11
GTACATTAATTATTTG	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TACACCCTCTACTGTT	ref_5492_upstream	125	181	132	105	211	114	208	126	212	104
ATTGTTATTATTTGGT	ref_5492_upstream	5	4	5	6	4	2	5	3	1	1
GACATTCTTCTCCCTA	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTTATTATTTTCG	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCAGGCTAACTT	ref_5492_upstream	10	7	8	2	6	5	8	6	9	4
CTTGTTGTACACGGCT	ref_5492_upstream	0	1	0	0	0	0	2	3	1	1
CGTTCTTCAATAGTTA	ref_5492_upstream	15	30	28	16	42	19	28	24	42	16
GCCTAGACCCTATGGT	ref_5492_upstream	42	88	70	41	74	33	88	39	99	33
GCATTTCTTCGGAACC	ref_5492_upstream	22	26	19	14	29	18	30	21	28	16
GTGCGCCGGAGCGCTC	ref_5492_upstream	3	2	0	2	2	3	3	0	3	1
TCATCGTGCGACCGTA	ref_5492_upstream	9	11	10	6	13	3	11	7	11	10
GGCCTCCGATCCTGGG	ref_5492_upstream	19	25	19	18	38	24	22	19	28	19
CACAACGCATTTTTGA	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCTACCCCCGGTT	ref_5492_upstream	13	26	14	22	28	18	35	18	49	15
TTTGCTACCGCCGTCA	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTGTTCGGTCAAT	ref_5492_upstream	35	33	21	26	23	21	40	20	51	23
CTTCGCTTAGCTCGAT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CATTTGTAGCGTGTGG	ref_5492_upstream	25	33	29	22	29	24	40	26	43	19
CCCGTCATTCAGGTGC	alt_5492_upstream	22	57	15	15	61	18	66	13	53	10
CTCCGATAAAGCAGTG	ref_5492_upstream	26	56	35	34	64	34	59	35	55	24
CATTAGACGCTCTCAT	ref_5492_upstream	28	22	24	28	36	14	28	18	22	17
CCATCTTGCCCCATCG	ref_5492_upstream	26	19	19	24	21	28	25	23	29	15
CTCGCCACCGTTGAGC	ref_5492_upstream	7	29	16	21	27	11	30	11	22	3
AATCCCTGATACAGTG	ref_5492_upstream	13	37	11	19	32	13	26	14	25	7
CGACCCGCTTATAACT	ref_5492_upstream	33	32	32	13	44	18	31	14	31	26
ACGATCTGTCCGAGCG	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCTCATCATGGCT	ref_5492_upstream	175	184	225	165	188	181	207	165	164	129
TGTAATTTTCGATTTC	ref_5492_upstream	3	11	8	4	7	2	7	5	5	8
TTGGAGTTTTATTACT	ref_5492_upstream	1	0	2	0	1	0	0	0	0	1
TCTTGTTCAATGACGT	ref_5492_upstream	11	17	9	14	11	12	7	11	11	11
CGTTACTTATATGCTA	ref_5492_upstream	2	3	3	3	9	3	0	0	2	6
CCCTTGGCATCTGTAG	ref_5492_upstream	11	24	19	17	31	14	36	15	40	12
GAATAAGGGTAGAGAC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGGTTGACACGTT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TAACTCCCCGCCAAAC	ref_5492_upstream	0	8	3	0	23	7	20	1	13	3
AACTGCCGCCTATCGG	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCGAGTGGGGTCT	ref_5492_upstream	5	14	6	2	4	2	3	4	8	1
CGTCTCTTTATGGGCT	ref_5492_upstream	48	79	49	51	67	44	89	35	73	51
ACGTCAAAATTTGTCC	ref_5492_upstream	7	15	14	8	13	12	18	7	21	4
ATGGGCAGCTCTGTAG	ref_5492_upstream	29	43	37	38	52	34	39	27	48	27
TGTGTTCCCCTTCACG	ref_5492_upstream	10	18	16	6	20	14	26	11	18	14
GAAAACGGTCGGTGCC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGTTGGTCTCCA	ref_5492_upstream	20	36	23	21	18	23	34	27	27	20
TAGAACGACTATGGGT	ref_5492_upstream	6	4	9	2	8	1	12	4	6	4
TGCATCATGGGCTCAT	ref_5492_upstream	23	35	23	15	22	16	19	13	30	14
AGCTGCAGGGCGGATT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTCCCACGACAT	ref_5492_upstream	38	23	37	21	43	23	27	22	32	30
TGGCTATCTGTAGTTG	ref_5492_upstream	7	16	15	5	18	15	22	10	17	9
TCGCCCCCAGCGCTAT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCGCTCTGAGTGG	ref_5492_upstream	6	9	13	8	13	7	7	5	7	9
GGTGATTGAAACTGAT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGCGTGTTTTTCT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTTAAGCATTACT	ref_5492_upstream	1	3	6	1	4	4	3	3	2	3
TCGACCCCAGCGCTAT	ref_5492_upstream	100	130	114	98	123	110	130	97	161	76
GTTCTCAAGCGCAGGC	ref_5492_upstream	9	12	13	8	14	9	12	7	11	6
CCGCTTTATTCTCCGT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GAAATATGCCGACTTC	ref_5492_upstream	100	139	148	146	133	101	150	119	131	90
TTTGGAAAGGTGCCCT	ref_5492_upstream	13	39	26	23	24	24	34	24	33	16
ATGCTGCTCAAGAACT	ref_5492_upstream	97	140	106	98	154	92	130	71	139	84
ATCTCTCTAATCAGCC	ref_5492_upstream	23	36	35	40	27	30	39	34	31	20
AATGAGCATATACGCC	ref_5492_upstream	43	55	53	43	62	43	59	47	68	37
TTATAACAGAATTCAA	alt_5492_upstream	70	100	51	54	58	72	108	47	95	43
AACGCGCAATACGGTG	ref_5492_upstream	5	18	5	4	9	9	14	8	13	5
TCTTGTTAATAGTGCC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CACTACTCACGTATTG	ref_5492_upstream	64	125	100	83	132	66	129	73	135	58
ACGCATACGTGTCTCG	ref_5492_upstream	32	63	47	35	51	31	46	43	51	29
TCCGGCTCTGCTACTG	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CTCATGCACTCAAGTA	ref_5492_upstream	5	6	4	0	4	2	4	3	2	6
ATAGTATCTCACCCGG	ref_5492_upstream	10	12	8	7	20	6	25	7	25	14
GTGGGTAACTGCCATT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CACTTTCTTCTAAACG	ref_5492_upstream	13	17	20	15	32	13	32	15	24	12
AGTTTATAGGTGGCTC	ref_5492_upstream	4	4	5	2	1	5	3	2	5	4
CGGTCAACTCTGTAGG	ref_5492_upstream	20	126	22	17	125	24	117	14	124	20
AGTAGGGTTAATAGTA	ref_5492_upstream	9	26	13	14	9	15	20	13	22	17
TAACGTATGTTTTGGA	ref_5492_upstream	8	9	6	13	7	6	6	3	9	2
CGATCTAGGGAACGGC	ref_5492_upstream	2	7	2	3	3	2	8	1	5	3
CTCTACTACTGCTCTT	ref_5492_upstream	3	7	11	2	4	6	4	2	8	4
TCGTTGACCGACCTGA	ref_5492_upstream	56	70	58	31	74	64	51	38	56	47
ACGCTACATATCTATG	ref_5492_upstream	2	5	8	2	7	2	5	1	8	1
CCGCTCGTATCATACC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCAGGGTGGACTA	ref_5492_upstream	33	26	31	27	34	17	29	23	41	16
TCTCGGTTGACACGTT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTGGAACGCTTAA	ref_5492_upstream	19	39	27	20	46	22	24	25	46	30
ATTGATAAAAAAGCGT	ref_5492_upstream	81	124	92	89	108	74	117	84	125	56
TCGTTCTGCGCAAACC	ref_5492_upstream	11	25	12	9	25	10	35	14	26	10
GATTACCCTGTGTCTG	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GTGACCGTCGGCAGCC	ref_5492_upstream	7	6	4	9	6	6	10	12	19	9
ATTAAGAATATCGATG	ref_5492_upstream	18	25	22	23	24	20	16	20	20	14
TTAGTTATGTACTTAC	ref_5492_upstream	5	39	9	5	45	4	24	4	24	4
TGTGTGGCTGGACAAT	ref_5492_upstream	7	14	10	12	18	14	18	8	12	8
CGCATTGCAACAAGCC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TCTATTTGGTTTCTTG	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTGATCCATTTTG	ref_5492_upstream	13	11	12	13	17	9	16	0	11	4
GCCTCTCTAGAACAGT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGGATAGATGCT	ref_5492_upstream	1	3	5	6	8	4	5	4	3	3
CTAATATACAGTTGCC	ref_5492_upstream	36	33	25	18	37	27	27	18	30	23
AGACCATGGGGTAGAT	ref_5492_upstream	6	13	7	3	14	11	12	7	13	5
CTGTCATTTTCACGGC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCGGCACGTTATT	ref_5492_upstream	19	18	18	12	17	8	15	11	19	5
CTGCCGATATTACTTC	ref_5492_upstream	17	19	18	16	7	23	11	13	17	10
GGATAGATTTGGCGAA	ref_5492_upstream	13	14	11	10	12	4	10	9	16	8
GATCCGCATAACCGTT	ref_5492_upstream	116	163	122	104	164	93	148	101	164	95
ATGGGGTGAGGTTGCC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCTTTATCGTTTG	ref_5492_upstream	56	58	65	57	58	56	53	51	63	38
CAGATCTAATGGGTTT	ref_5492_upstream	5	4	5	6	4	5	6	0	4	1
GTCCCCTACCTAGGGT	ref_5492_upstream	20	14	18	13	24	20	30	14	30	27
GAAGGACTACTGATTC	ref_5492_upstream	6	23	12	10	16	9	11	11	31	16
CAGTTAAGGTACACTC	ref_5492_upstream	25	33	11	22	38	12	57	14	37	15
TTTGTGCTTTCGTTTG	ref_5492_upstream	61	74	77	46	72	74	64	54	94	59
GGGTAGTCAAGTTGAC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
TCTATCAATCCTCATA	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CTCTACTACTACTCTT	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
AATGGTGCGTCACGGT	ref_5492_upstream	121	169	148	128	149	128	155	112	170	116
TTAGTCACGCGCAGGC	ref_5492_upstream	25	18	24	22	16	15	28	20	26	24
ACGTTTCTGATTGAAC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGATAGCCACAG	ref_5492_upstream	2	0	0	0	2	1	1	1	0	3
TCGCCCTACTCATTCC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
ATGCACCAGTAAGCCG	alt_5492_upstream	135	176	172	130	176	139	220	91	207	99
CACCCTAACTTTACAC	ref_5492_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTGAGGGTAACGC	ref_5492_upstream	9	11	12	8	15	4	11	17	17	7
TGAATGAGCTATGCAG	alt_5867_new	0	0	0	0	0	0	0	0	0	0
GTCGGGTGAGTATTAA	alt_5867_new	33	39	58	27	48	28	49	29	42	34
ACCTTGTCGGCGTGCA	alt_5867_new	39	87	64	40	93	30	107	34	105	32
TAGTGCCTCGACTTTC	alt_5867_new	22	34	36	12	44	16	33	15	32	18
GCTATAGTTCTTATCC	alt_5867_new	0	0	0	0	0	0	0	0	0	0
GATCTTACTTACGGGG	alt_5867_new	0	3	3	4	1	0	3	1	9	0
GGTTGGCTGAGCGTGG	alt_5867_new	1	2	1	4	7	4	6	4	11	3
GGGTAAATGACCTTCG	alt_5867_new	12	12	7	3	6	10	13	7	4	5
GGCGCCCCTAATTTTG	alt_5867_new	0	0	0	0	0	0	0	0	0	0
GTGAAAGATCTAGAAC	alt_5867_new	0	0	0	0	0	0	0	0	0	0
ACAACTCATCTGCTCT	alt_5867_new	0	0	0	0	0	0	0	0	0	0
TGTGTCTAGTGATCAT	alt_5867_new	118	131	134	108	174	126	170	98	165	113
TATGAGCTAGCTTGTT	alt_5867_new	2	2	4	1	7	2	8	3	4	4
CACGTCAGATTTTTTT	alt_5867_new	11	30	15	9	30	15	17	10	28	12
GCATGCGACATTCCTG	ref_5867_new	30	22	28	27	26	27	19	14	24	12
ATGCCAGATTGAATCT	alt_5867_new	4	5	7	5	15	4	7	7	6	3
GGTCCGCTGCGAGGGT	alt_5867_new	10	11	9	7	12	9	16	15	15	9
ATTGTTCTTAACTAAA	alt_5867_new	0	0	0	0	0	0	0	0	0	0
GTGGAGTCAGAAGATT	alt_5867_new	87	137	115	85	111	84	152	62	155	75
GCTACTAGCTGCAAAA	alt_5867_new	0	0	0	0	0	0	0	0	0	0
CTATGTTATCTTTCCA	alt_5867_new	23	22	19	10	26	30	22	15	35	14
AGGCCGTGTGGTCAGC	alt_5867_new	29	49	49	37	46	24	47	33	42	26
TCTATTTCCACATGAT	alt_5867_new	7	6	10	8	18	7	7	11	15	4
AACGATCTGGGCTGTT	alt_5867_new	24	46	18	26	34	24	29	21	55	26
TATCGAGGTCTCCGAG	ref_5867_new	40	52	40	48	43	50	51	40	61	39
TTTGTGCTTTATGGTT	alt_5867_new	0	0	0	0	0	0	0	0	0	0
GAGGGATATTCTAACA	alt_5867_new	0	0	0	0	0	0	0	0	0	0
GGATTGATGTTAGTGA	alt_5867_new	11	40	26	17	18	15	28	23	23	10
GTCGCAAGTATTGTTG	ref_5867_new	13	11	12	9	14	11	15	8	17	11
CGCAGATATCTAATGG	alt_5867_new	11	13	10	3	11	9	17	11	18	7
ATACTGTTCGCTGTGC	alt_5867_new	16	31	24	21	27	12	23	17	44	18
TAATTTGGGTCACACG	alt_5867_new	13	15	10	14	16	13	26	7	9	11
TGCTACCCACATACAT	alt_5867_new	16	31	17	14	40	19	42	15	28	13
TAACTATGAAGGCAGT	alt_5867_new	8	8	3	6	10	4	4	8	8	6
GTGAGCGAGGCCGATT	alt_5867_new	54	63	56	54	62	55	60	41	73	44
TGTTTAACGGGCAGAC	alt_5867_new	2	15	10	8	8	5	14	3	22	5
TCCTTTATAACTCGAC	alt_5867_new	14	35	43	33	50	26	44	30	49	23
AGATCAATTCGTTTCT	alt_5867_new	1	6	8	6	4	0	5	4	9	5
TGAGTTGTATGAACTC	alt_5867_new	0	0	0	0	0	0	0	0	0	0
TCTCTACCCTAGTCCG	alt_671_fdr	42	60	54	39	55	47	50	49	69	44
GCTCTCGGGACTTTTT	alt_671_fdr	15	12	33	19	11	21	14	11	14	14
CCTCTTCGCGTGCAAA	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCGTACTTGGAAC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
AATCTGCAAAGGCAGC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTTCTGTCCGCAG	alt_671_fdr	16	26	35	34	28	27	21	28	19	29
TATCACGGTTGGACCT	alt_671_fdr	14	13	17	15	10	7	9	6	13	13
CTAATTTGGCTTTTGG	alt_671_fdr	48	47	60	65	64	45	61	50	47	44
GCTATACTACTTCGAG	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCAGCCTGTTAAT	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTCTTAATTTGC	alt_671_fdr	13	9	12	14	7	15	11	4	6	17
CATGGTAGATCCATGC	alt_671_fdr	0	4	4	8	1	2	2	5	1	6
GCTGTTTTCTCAGATT	alt_671_fdr	90	72	122	109	89	87	68	83	91	101
GTCGAGCTTAAAGGCC	alt_671_fdr	14	5	10	14	11	6	6	9	3	6
CGACCAAATGATCTTC	alt_671_fdr	31	26	42	34	35	29	36	38	32	35
TCTTCTCGGCCGCTCA	alt_671_fdr	64	49	79	50	81	59	67	78	57	43
CTCTTTTCCATTGGAC	alt_671_fdr	52	47	72	63	52	58	55	59	54	49
TTGGGTACGCTGATTT	alt_671_fdr	48	40	54	50	36	48	63	24	41	46
TCAGGGGGCCAGACTA	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
ATCGATGATTGGCAAA	alt_671_fdr	91	91	112	117	92	105	91	83	86	83
AATTACCCTCGATTCA	alt_671_fdr	82	75	106	72	75	80	59	84	81	85
ATAGTCATTAAACTGC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
GGACGACCTCGTTTTT	alt_671_fdr	56	20	58	46	24	28	37	49	46	36
GCCAAGGAGTTTCCCA	alt_671_fdr	3	6	7	10	8	5	3	6	5	5
ATCCAAGTTATACATC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTGCTTACTCATA	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGTCTCTAAATCT	alt_671_fdr	44	49	46	54	68	35	70	41	69	38
TTGCCGTGCCAACAGT	alt_671_fdr	36	29	28	30	21	36	29	24	29	30
CCTGCTTCTAACGCGG	alt_671_fdr	9	44	19	15	29	16	35	13	25	22
CTAACTGAATTTCGTT	alt_671_fdr	133	110	152	112	123	125	111	128	127	143
CCTAAGCTTTAATTCC	alt_671_fdr	2	7	2	5	11	3	5	2	7	9
ATTTAGATTTCTCATA	alt_671_fdr	5	5	4	2	7	5	7	3	4	2
GTGTTTCCTAGTGATT	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TAACAAATTAAGGTAT	alt_671_fdr	89	82	97	104	75	85	75	83	75	81
ACTGGTGATCTTGAGT	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCACGTACGGTTG	alt_671_fdr	80	73	53	62	47	54	49	66	48	47
CTTTTCAAAGATAGAC	alt_671_fdr	23	27	40	29	20	27	34	26	17	26
ACAATTCATACGGCCA	alt_671_fdr	50	51	71	60	43	66	58	65	59	54
CCTCTTGAGAGGTATG	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTTAGTAAACTAT	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TATGAGGGGGTGGGAA	alt_671_fdr	4	0	5	4	3	1	2	5	1	8
TGCTACCACACGTTGG	alt_671_fdr	29	30	59	33	61	42	40	41	44	31
CGCTACTTGCCTTCGG	alt_671_fdr	14	20	18	18	10	18	13	14	16	17
CGTCCAACAATTTAGC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGTAAGAAGAAT	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTCTTAACTAAAT	alt_671_fdr	16	8	13	18	15	17	5	7	9	11
CGCGGGATTTGTCGCT	alt_671_fdr	82	80	93	81	68	75	99	81	76	82
TACTTAGGCTTCTTCC	alt_671_fdr	7	8	8	13	2	9	4	7	5	8
TCGCATTATAAGCATT	alt_671_fdr	150	113	158	124	129	120	119	144	178	103
CATTTTAGAGCCTTAC	alt_671_fdr	124	123	160	112	117	123	117	144	166	118
TTTATATGGCACAGTC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
CGAGAGTGACGTGCTT	alt_671_fdr	7	5	12	4	4	9	15	8	6	3
GTTCGCCGATCGTCCG	alt_671_fdr	22	34	23	15	17	24	36	19	18	21
ACTTTCTGTCTTATGC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGGTGGGCCTTTT	alt_671_fdr	2	4	6	6	3	3	6	0	8	2
TCAGCCGTTCGATCGG	alt_671_fdr	2	3	8	1	5	4	2	2	4	1
TTATCGGTCGGGTAAG	alt_671_fdr	5	12	10	7	29	4	17	6	19	8
CGGTAAGAACCAGCTC	alt_671_fdr	18	19	33	25	17	15	18	13	11	12
TTGTCTATCCGTTTGC	alt_671_fdr	64	67	83	81	44	53	76	52	50	52
AGCCACTTGTTCCACT	alt_671_fdr	39	40	59	41	54	35	33	36	47	31
AACGTTCCGCCCTGGT	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
GTCTAAGACATATCAC	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TTCCATGATTGTATCA	alt_671_fdr	137	133	167	182	128	117	132	125	124	122
TACCATCCAGCATACA	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTTTTGTCGTTC	alt_671_fdr	47	35	61	34	43	51	34	54	43	45
GAGTTAACGATATTTA	alt_671_fdr	234	159	258	197	192	195	169	182	171	148
GTTGTCCCATTGCCCA	alt_671_fdr	27	25	28	22	20	27	36	28	25	13
TTCTGATTTAATGATA	alt_671_fdr	16	18	18	17	17	14	19	16	23	16
GCAAGCTTGTTTTACG	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
GACGAAAGACATATGG	alt_671_fdr	110	97	142	122	91	116	101	128	117	118
GTCCCGTGGGACAGGT	alt_671_fdr	40	30	24	24	27	26	31	31	16	28
GAGGGGCTGCTACGAG	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTGACATCACGCA	alt_671_fdr	215	158	298	225	186	228	209	249	181	221
ACCTCAGAAACCGCTT	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
TACGGAACGTATTCGA	alt_671_fdr	4	6	10	6	5	4	4	7	4	9
AAAGTGTGCGATCATT	alt_671_fdr	137	121	128	137	123	110	113	120	127	132
CTCTAGTTTTCCGTCA	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
AGAAAGTATTTCCAGC	alt_671_fdr	38	28	29	18	32	22	29	32	29	29
GCCCAAACTTGGCTTC	alt_671_fdr	14	12	13	18	14	14	19	20	7	12
AATGCGGGACCGTGAA	alt_671_fdr	13	12	20	14	15	14	16	11	15	6
TTCTAACAGCTCGTTA	alt_671_fdr	6	5	6	18	5	2	7	3	8	7
TTCGCCGAGTGTGAGA	alt_671_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGTCACTTGCCGC	alt_671_fdr	51	52	56	84	50	48	47	67	46	48
GTCGTGACATCACGCG	alt_671_fdr	0	0	0	1	0	0	0	0	0	0
TGTCCGGTATTTGGCA	ref_5486_fdr	9	10	5	11	6	3	9	4	5	5
GCTCCACGATGAGATG	ref_5486_fdr	10	14	9	6	7	11	9	5	4	5
GTTATATTTTTTTCGT	ref_5486_fdr	73	44	88	68	62	73	71	49	67	65
TGGAGTTTTTACGTAC	ref_5486_fdr	2	13	16	7	16	7	9	7	12	6
CTGTAATGCATTTTTG	ref_5486_fdr	55	55	66	33	44	43	49	49	60	39
GGTCAGATCGTTATCT	ref_5486_fdr	20	51	35	29	53	27	34	25	29	24
CATGTACCGCTCGCCT	ref_5486_fdr	1	5	7	7	9	5	10	6	12	7
TTACTCGATTGTAGTT	ref_5486_fdr	14	21	10	15	21	14	27	7	23	8
AACATGGGTATGCAAG	ref_5486_fdr	54	73	70	57	69	57	60	53	70	44
AGGCCCGTATATCGGG	ref_5486_fdr	5	18	7	4	4	4	5	9	6	4
GCAGGCCATACCTTAC	ref_5486_fdr	95	167	122	99	153	98	137	101	155	101
CGGTACTTCTTGTAGT	ref_5486_fdr	102	121	114	101	112	81	116	71	124	83
AGTATAGACGCAAAAA	ref_5486_fdr	25	33	34	30	42	33	47	26	36	30
CTTTCCCCTTTCCTTG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CAACGTAAATTTACAT	ref_5486_fdr	17	19	12	18	24	20	17	24	30	16
CCGGGTCGCATTCGAT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAGCTATGTATAC	ref_5486_fdr	27	32	31	32	28	20	39	27	24	24
CGGGGCATGAGGCTCA	ref_5486_fdr	28	26	39	23	35	26	27	26	23	28
CTCCATTTTGCAGGTG	ref_5486_fdr	9	4	9	6	6	7	6	7	8	6
GTTGTGTAGGGAATCA	ref_5486_fdr	36	48	47	35	57	32	56	28	64	25
ATTTTGAGGCTCCGTA	ref_5486_fdr	2	15	5	3	7	8	13	7	9	5
ATTGGACACGACGTGT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
AGACTACGATGTGTGG	ref_5486_fdr	8	6	9	9	9	9	8	7	10	7
CTCTTTTTAATCGTGG	ref_5486_fdr	17	32	19	11	13	10	26	12	26	14
CTCCATTAACGCTTCC	ref_5486_fdr	10	32	27	19	18	17	24	21	29	10
GCCAGCGCGTTGCTTC	ref_5486_fdr	8	15	23	16	26	18	27	19	24	16
ACTCATCTCTAAAAAT	ref_5486_fdr	18	32	20	32	26	38	31	24	26	25
CGTTATCGTAGCTACT	ref_5486_fdr	26	22	28	22	23	30	26	17	15	16
ACTTTATTCATATGAT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
TTATTCTTACACGCCA	ref_5486_fdr	24	20	26	24	31	30	23	17	33	24
TGTTGCCGCCCGCTCG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCGATTCTTTTGG	ref_5486_fdr	4	10	15	4	12	12	4	2	17	9
CTTGCACATTTTTTAC	ref_5486_fdr	20	23	23	18	30	15	20	7	19	15
GTGCGAAGAGCCAAGT	ref_5486_fdr	8	3	4	3	7	2	10	5	7	3
TATACGCGGTAATTCC	ref_5486_fdr	13	12	11	11	13	5	9	8	9	13
GCTTATTTCGGCTTGC	ref_5486_fdr	50	75	57	40	80	41	38	47	64	60
ACCCGGCGAGTATTGT	ref_5486_fdr	9	20	32	7	18	16	18	12	12	12
GTTTCCGTGTCCATGT	ref_5486_fdr	21	18	19	17	25	21	21	14	20	13
TTCGTAGTATCGTAGT	ref_5486_fdr	31	23	22	33	34	19	50	30	30	31
TCACCAACAGGAGGTG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTTTGCCGATTAG	ref_5486_fdr	6	9	12	10	6	10	8	13	9	10
TGCATCATCTCATGCA	ref_5486_fdr	39	51	61	45	62	33	59	31	47	41
CAACTGGCCGATCTAG	ref_5486_fdr	5	10	12	7	10	5	14	11	14	15
CTCATTAGTGGTAACA	ref_5486_fdr	23	31	19	19	32	22	26	15	15	17
TGTAGTTCTAGCGGCA	ref_5486_fdr	21	19	16	9	11	12	10	15	18	14
GACTTGCACAATCCAC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCTGTAGCTAAAT	ref_5486_fdr	9	14	9	6	19	14	13	16	15	13
GTGCCTCGAGACGAAA	ref_5486_fdr	37	39	24	27	44	19	49	22	40	20
TCCAAATTTGTTCAGC	ref_5486_fdr	69	82	87	71	92	81	76	71	70	61
TGTTTTCCTCCTATTC	ref_5486_fdr	5	7	7	8	8	6	5	6	8	5
AGGGATCGCACGGTTC	ref_5486_fdr	13	18	16	10	16	12	27	7	19	13
TTTGGTAGCCACGGGT	ref_5486_fdr	11	12	14	13	24	12	16	11	15	16
CCGCGACATATATAAG	ref_5486_fdr	9	10	6	5	12	4	7	2	11	7
AGGTCCATAGGATGGT	ref_5486_fdr	57	52	58	49	67	30	57	39	76	27
AGCCATGTTATATCGC	ref_5486_fdr	8	15	12	11	24	7	19	14	26	6
CCTTGATCGATATATT	ref_5486_fdr	30	27	29	22	35	22	36	21	37	18
CGGGCGTCTCCTCCGC	ref_5486_fdr	39	35	35	34	47	34	41	48	33	36
CTAGATCTTTAGGACA	ref_5486_fdr	27	36	33	26	32	30	31	23	38	21
TCATATCCTGCTACTT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTCGAACGCCAAGTTG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGGTATATACTGGTGT	ref_5486_fdr	3	9	5	7	9	11	12	3	11	2
AAATTATGCCAGCCCC	ref_5486_fdr	52	59	66	47	67	36	64	50	56	36
TCGGCTGTCAAATTGC	ref_5486_fdr	101	122	95	96	118	89	109	97	106	81
GGTCGGGTCTATATGG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GCTAACTAGAGTGTGC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAACGCTTTGGGT	ref_5486_fdr	14	9	10	9	7	13	16	10	18	15
TAACAGTTTCATTATT	ref_5486_fdr	23	30	30	32	21	23	31	25	21	16
CCAGATTACGATACTC	ref_5486_fdr	6	13	7	10	18	9	16	4	13	7
CGGTTATCGCTCGCGT	ref_5486_fdr	12	21	11	9	33	13	24	7	20	10
TAGGTATCTTAATGGT	ref_5486_fdr	8	12	15	17	10	8	17	10	12	16
TGTGCTTATATCGTTC	ref_5486_fdr	34	40	35	32	23	36	34	22	38	25
ATAAGTTTAGTCAGGG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GGGCGTTATGCGGCTC	ref_5486_fdr	7	17	13	11	14	11	9	7	16	11
GGTGCTTCGTCTTAGG	ref_5486_fdr	16	12	13	12	28	19	26	22	22	10
GCTTAGGTTGTTGACC	ref_5486_fdr	57	70	66	58	75	59	86	49	108	42
ATCTATTGCCTGATCG	ref_5486_fdr	30	42	43	48	57	32	40	32	30	26
AACACCTTGTTGTTTA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTAAAATGTGAGT	ref_5486_fdr	0	2	0	0	0	0	0	0	0	0
ATATTTCCTCAGGCTT	ref_5486_fdr	18	18	19	14	27	19	31	22	21	18
CGCTAAACCTGCGTTT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GAACATTTGTCTTGCC	ref_5486_fdr	13	17	7	14	6	10	13	11	14	12
CTCTTCACTCCTCATG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGATGGGATGTCC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCGCGTTTGGTGC	ref_5486_fdr	13	18	18	6	18	10	12	17	15	7
GAGCCCCCTAGGGGGG	ref_5486_fdr	30	49	45	29	37	33	52	25	48	29
GTTTATCGCATATCCC	ref_5486_fdr	6	10	14	10	9	12	10	8	12	11
GGTCTCTAGGTCTCAA	ref_5486_fdr	50	54	57	33	54	47	62	46	62	44
TAAGAAAACAGATTCT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CAAATTCGTCCCACTA	ref_5486_fdr	14	11	21	8	6	7	13	11	10	16
TGTGAGATGCATTGAC	ref_5486_fdr	60	96	61	58	87	61	79	66	97	52
TTGCCCTTGTCCCATG	ref_5486_fdr	82	93	109	77	105	76	104	84	106	80
TCTAGTGCCATTTTAA	ref_5486_fdr	63	97	83	58	83	43	87	47	73	49
TCCAGGCTTTTCTAGA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
AAAGCATGATTGTTGG	ref_5486_fdr	17	23	20	10	33	16	26	5	18	8
ATCGCTGTCTCCCAAC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCAATCCGTTTCT	ref_5486_fdr	24	21	15	15	15	19	19	15	18	17
ATAGACTGAGTTAGGG	ref_5486_fdr	10	20	15	8	7	6	8	10	7	9
GCGTTGACTTATCGTA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGGCAATCGCCACGTT	ref_5486_fdr	6	10	10	9	19	7	10	8	11	9
CGACATCATTTTTGTC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGTTTGTATGGGT	ref_5486_fdr	20	26	22	30	30	30	44	25	30	26
CCATTAGGCGAATCAA	ref_5486_fdr	151	167	153	117	200	129	167	134	146	139
TCCTAGCTGTGCTGTC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTGAACGTCCGGA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
TCAACGCTGTTCCTTT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGATTAACAAGTGCTA	ref_5486_fdr	12	18	15	10	20	20	9	9	13	13
GCTCGATAGGGGACGT	ref_5486_fdr	77	93	119	104	99	91	106	87	104	67
CTATTTCCCGTCGCGT	ref_5486_fdr	3	8	2	4	8	4	7	2	9	1
TTGAGGCGTATTGTGC	ref_5486_fdr	29	35	28	37	39	27	29	23	37	36
CAGGTAGCTGTTCGAA	ref_5486_fdr	104	136	127	106	133	89	140	109	148	94
GCAGTGTTTATTAAAT	ref_5486_fdr	5	11	4	5	4	9	6	1	2	5
GACATCTTTTGTTCGT	ref_5486_fdr	12	17	24	19	7	22	22	9	19	15
GATTTGCGGCCAGATT	ref_5486_fdr	23	28	19	12	15	8	14	15	13	7
TACGCAGACCAGTTCG	ref_5486_fdr	14	18	20	15	20	12	17	11	23	17
CTACCAAAGATAATCC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTACTGTGTCTCT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGTTGTTTGGAGT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CAAGCTATAGTCTAAT	ref_5486_fdr	14	34	21	21	32	26	30	26	23	16
TGGTTAGGAAAGCAAA	ref_5486_fdr	62	73	66	48	59	72	70	50	100	44
CTCTGCGCGTCAATAA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GTAGACTCCCTGGAAT	ref_5486_fdr	42	234	72	61	255	41	196	32	240	52
TTTTGGTGCATACATC	ref_5486_fdr	24	30	20	22	18	18	20	20	21	25
GTACTCGCCAGTTTAA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
GCCGAAGATTCTACTT	ref_5486_fdr	18	38	21	27	50	23	41	11	37	24
AAGTATAAAGTGCGAA	ref_5486_fdr	4	5	8	2	7	6	10	3	8	2
GGCCAAATGGCTTCCG	ref_5486_fdr	18	17	19	13	18	21	17	8	26	9
AAAAGTTCTTTGTCAT	ref_5486_fdr	12	12	11	7	18	10	14	12	12	20
CCCTGGTGAACCTCTT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
AGCAGATCAAAAATTC	ref_5486_fdr	5	2	14	4	7	12	10	4	8	2
GCGGGGTAGCCGGTGC	ref_5486_fdr	5	4	12	8	10	5	9	12	7	15
GTGCTCTATTCTGCAC	ref_5486_fdr	2	3	3	1	4	3	2	4	0	4
TGGTGAAGTAAGCCCT	ref_5486_fdr	28	39	48	26	27	29	43	33	35	23
TGCTTTAAGTATGCCT	ref_5486_fdr	14	18	24	17	21	12	22	10	21	19
TCTCCGGGACTTTAAG	ref_5486_fdr	10	10	21	11	14	4	11	8	7	5
TTGCTAGTTCATACGG	ref_5486_fdr	23	29	37	28	38	31	47	28	35	39
TAGTCGTCAATCCGAG	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTTCTTGGAGTAA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGCCGTTGTGTTT	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CTGATCGTGCCCCAGC	ref_5486_fdr	26	16	26	27	25	17	24	20	30	18
ACGTATACGTCGAAAG	ref_5486_fdr	4	9	8	7	7	10	10	9	7	1
CATTGTTGAATGGACT	ref_5486_fdr	40	38	35	40	54	27	53	33	74	44
CCAGGCACGCATTTCT	ref_5486_fdr	67	92	84	76	101	69	110	73	90	68
ACTACGCGACGAACGC	ref_5486_fdr	37	61	60	56	59	43	60	41	62	54
GTGGACCGTTACCATT	ref_5486_fdr	9	12	11	5	7	5	12	1	12	6
CGCTGGTCGTACTCGC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CCAAGATTAGCGATGG	ref_5486_fdr	18	31	39	34	24	20	31	33	40	30
ACATCTACGAGCCTGG	ref_5486_fdr	7	10	4	7	17	14	4	8	5	5
GTTATATGTCCCCGCT	ref_5486_fdr	19	31	11	13	33	12	20	13	20	15
CGTGAATGGTTCCTTG	ref_5486_fdr	27	16	16	13	21	15	26	13	25	7
CCATATAACGATGTGC	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGAGGTGCTTAC	ref_5486_fdr	3	14	10	8	10	5	16	4	15	8
GTGTTCTGGCCTGTGA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCTAACCCGTGCG	ref_5486_fdr	8	3	12	3	1	4	7	5	6	6
GAGCGCATCGAGCATT	ref_5486_fdr	5	10	6	5	9	3	11	2	7	11
ATCGTCCGAGGTATAC	ref_5486_fdr	23	47	45	51	42	50	89	34	74	54
GTATACGTGCAGAGAT	ref_5486_fdr	13	7	10	5	15	15	11	14	17	7
TAATATATCAGTTAGT	ref_5486_fdr	4	3	10	4	10	3	11	7	10	4
CAGTCATCTTGCGGCA	ref_5486_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCTGGACGTTCGG	ref_2028_RC	58	27	90	73	36	70	16	65	38	55
ATCAAAGCTGAGTCAG	ref_2028_RC	30	8	41	31	9	30	6	28	13	48
CAGTTCATATTTTTCT	ref_2028_RC	2	1	1	0	0	1	1	1	0	1
TTTGTGCCGTCTTTCG	ref_2028_RC	178	86	234	189	78	214	75	162	80	180
GATTGCCTTCTCACCC	ref_2028_RC	16	6	29	19	10	21	8	16	8	24
CCTATCCCGTTACTGA	ref_2028_RC	15	11	25	27	20	14	10	10	18	15
TCTATCCTCTAGAACA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TAGCCACGGACTGTGT	ref_2028_RC	25	15	27	18	8	12	15	17	16	18
TCGCGCTCCGGAATCA	ref_2028_RC	11	10	17	6	4	14	4	16	10	7
CCCTCCCTTTCCCTCT	ref_2028_RC	398	135	500	412	100	392	141	339	128	311
ATGGGCTTGCGTTGAT	ref_2028_RC	131	41	148	129	69	142	37	116	46	114
ATTTTTGTGTGCGGGA	ref_2028_RC	41	20	59	43	14	39	8	42	21	58
ACGCTGTCACACTTAG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ACGTGGCATAAGCTTG	ref_2028_RC	40	20	82	58	14	55	29	54	10	59
TTTTGCATCAGGCTGT	ref_2028_RC	145	53	172	151	53	162	52	155	55	133
TTTATAAATCTCGCGC	ref_2028_RC	14	7	14	13	5	14	5	12	2	9
TCCATTTGTAATATAT	ref_2028_RC	17	5	9	18	3	5	5	14	3	10
AGCATAAACTCCCTGA	ref_2028_RC	28	4	29	23	12	34	10	18	16	31
CCGCGCCAGTGTTCAT	ref_2028_RC	49	29	80	52	29	48	37	66	33	54
ATACCGAACAGTTCAC	ref_2028_RC	319	106	380	308	119	317	107	249	114	271
GGTCTGACTACTGTTC	ref_2028_RC	29	10	25	31	12	19	5	22	9	13
TGACTGTTACTCAGGT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TGACGTTTGTCGGTGC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CTTACGTCATGGGCGG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TAATCGCGTGTCCAGT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TGAGGGCCAAACAGCT	ref_2028_RC	334	115	366	338	99	337	105	291	110	296
AACACCGTGCCTGGGC	ref_2028_RC	174	53	213	165	54	136	95	151	71	166
TCCTTGTCTTTTTGGC	ref_2028_RC	396	151	464	423	129	415	157	410	150	353
TAGCTGGATTTCTCAT	ref_2028_RC	370	105	432	306	112	332	142	301	113	309
ATCCGGCCAGGAGAAC	ref_2028_RC	10	9	11	12	13	6	8	10	9	13
CAGTTATCCCTCGGCG	ref_2028_RC	372	244	347	321	252	309	292	302	244	277
ATGATTAGAGGGTAGA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCGGCCATGGAT	ref_2028_RC	116	49	135	95	35	97	41	90	40	107
AGCTATGGGTCTTATT	ref_2028_RC	139	37	161	134	37	126	44	111	45	101
ACCCGGGCTATAATGT	ref_2028_RC	44	14	60	38	21	55	24	49	28	49
CTCTTTTCCTTTACTC	ref_2028_RC	56	32	84	60	23	57	22	66	22	39
AGATTTAGGTCATTGC	ref_2028_RC	450	173	570	507	191	447	178	465	180	493
ATATTTCTCAGGGGCT	ref_2028_RC	30	9	36	47	17	36	11	26	19	44
GTCGGGGAGAGGCTGG	ref_2028_RC	14	3	19	22	8	16	4	15	3	21
CGTTCCTTGGTGACTG	ref_2028_RC	157	51	165	136	40	141	77	133	61	138
TAATGGACAATATTTT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CTTGATTGTAGATTTG	ref_2028_RC	30	7	34	31	11	30	9	32	16	27
AAGGGTAGACAATCAA	ref_2028_RC	10	4	7	10	4	8	1	8	8	7
GTGGTACACTGTTCTG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GATACGCCATCACGAT	ref_2028_RC	466	130	532	453	153	447	137	434	154	394
TCATAGAGACCCCCCA	ref_2028_RC	26	6	39	32	13	16	6	25	10	16
CACCATTACGAATCCG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
AGACAGCTGCCACTCT	ref_2028_RC	134	43	146	144	28	118	53	106	67	116
CGATTCGGTTGACGGC	ref_2028_RC	67	26	57	51	29	47	32	50	46	54
GTCTGTGTCCGTGCAA	ref_2028_RC	131	56	172	135	58	119	55	131	53	135
AGAGAGTGGAGCAAGA	ref_2028_RC	50	22	52	50	16	58	14	39	12	46
GACGCAGGTAAGCTGA	ref_2028_RC	120	51	151	117	27	126	46	128	57	97
AGGCAATCATTGGGAT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TTACCTGGGCCGCTCC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TGCCTGTTACTCAGGT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTTTAATCTTGA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
AGGTGGTAGTTTCAGG	ref_2028_RC	109	38	122	120	47	115	36	99	32	98
AATGTTTAGTTTCGGG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ATGCCGGACTAATGGT	ref_2028_RC	33	16	56	34	13	50	15	39	12	29
TATCGGGTTTTTCCAT	ref_2028_RC	84	24	95	76	24	101	24	84	38	63
CGTCATACACGACCGG	ref_2028_RC	24	8	28	27	18	20	11	24	10	18
CAATTGTGCCAGTTGC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GATCGCTATGTTGTCT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TTTATCTGCCCACGGC	ref_2028_RC	46	14	65	43	10	53	15	40	31	51
GCTCATTACTCCACAG	ref_2028_RC	113	40	115	110	58	96	39	103	39	79
TATCTTTCCCGGTTAG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GGTGTTAACTCCATCG	ref_2028_RC	196	56	222	159	67	162	66	175	83	173
ATCTACTGATCGGCTG	ref_2028_RC	57	19	61	61	19	60	15	44	17	52
GAGAGGGAAGAAGCAA	ref_2028_RC	47	23	62	42	19	57	10	38	16	50
TCTAAGGTGGAAGTTG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ATGCTGGCTCAGGACA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CTGCTCGATTTAGTTG	ref_2028_RC	12	5	22	16	12	17	3	10	6	15
TCGAGACTAGAATGTA	ref_2028_RC	196	74	194	167	94	166	91	141	98	162
TGTGTGATGTCCTTCG	ref_2028_RC	77	43	111	100	38	81	45	85	50	74
AGTGCATGTAAGCGCT	ref_2028_RC	66	27	85	65	33	81	29	53	35	77
AGAGTTTGCTTAGTCT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
AATTGCTGTCGTATTA	ref_2028_RC	69	16	96	73	29	70	33	72	25	62
TCATCGAGCAGTCGCG	ref_2028_RC	42	14	40	37	14	46	14	41	19	33
AATTGGTTTATTGGGT	ref_2028_RC	107	41	143	127	69	116	45	162	41	132
GCGATCGGTGGCTAAC	ref_2028_RC	39	12	54	60	20	33	27	47	18	43
TCACCCTCTGGCGTAT	ref_2028_RC	15	9	21	31	17	13	11	15	10	25
ATCATACCATTAACTG	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TCAACGTGACCTCTCA	ref_2028_RC	82	30	111	69	23	67	36	77	36	74
TGCAATTCTCCTTTTT	ref_2028_RC	7	3	8	6	5	11	2	18	4	10
AGCCTGTTACTCAGGT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TTCCCATGTTTTTTTC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TATTATAATGTCCATA	ref_2028_RC	154	52	174	143	50	118	59	155	56	110
ACCGATATTTTTCTCG	ref_2028_RC	21	6	15	24	11	19	8	10	9	13
ACATTCCTCGCTATCA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GAGTATTTATACGTCG	ref_2028_RC	87	57	86	86	55	87	44	94	51	74
AATAAACTTGTGTGTA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CGAACGATGTCTTCTT	ref_2028_RC	52	26	96	69	26	42	22	70	23	50
CAGGTATCCTATGTAT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GTGCGTCACTGAGCCC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CAGCCCATTGGTCTTG	ref_2028_RC	95	50	85	81	55	67	56	71	50	73
CAAGCCCCACGTAGCT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CAACGAATTCATGCTC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GGCCGCTAGATCAGAT	ref_2028_RC	31	32	44	26	16	18	19	27	29	24
TAGGCTTTTTGCACGG	ref_2028_RC	14	5	21	22	3	12	5	23	7	8
TCAAGATTAGTCGCTT	ref_2028_RC	134	45	150	152	47	119	46	129	38	121
TTACCCCTGGCGAGTC	ref_2028_RC	25	15	34	28	21	27	20	26	12	21
GGTATATCGTCTGCTA	ref_2028_RC	202	64	247	200	84	183	80	160	78	208
TAGGTATTCCGCGTCA	ref_2028_RC	37	11	33	32	10	39	11	33	13	29
ATGAAGATGAAGGCAT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CGTTGGCTGCTAATTT	ref_2028_RC	88	39	110	122	29	95	39	110	30	95
GGGTTTGATCGGCGCA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GGCCGGTTCTATAATT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GCTCGAGTCGTAGAGT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TGAGGCGTACCGCAGG	ref_2028_RC	35	7	40	34	19	42	14	21	12	24
TTTCGTTGGGCACGCA	ref_2028_RC	20	4	14	15	7	16	6	22	11	15
TGTGGATCAGGGTAGT	ref_2028_RC	128	53	160	153	61	128	65	142	53	122
CGTGGACTATAGCTAT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TATCTCTAGAGAACCC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TCGATACCCCCGTACT	ref_2028_RC	117	43	167	131	44	125	36	125	51	119
GACTTTTCTAAGGTGG	ref_2028_RC	45	11	53	43	15	52	16	45	15	36
CTGGTATGTCATCGGC	ref_2028_RC	162	50	209	194	50	173	39	105	50	157
ACCTCCCGTTGAATTA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ATAGCATATCAAGCCG	ref_2028_RC	74	40	106	104	27	65	41	66	29	76
TGCCTGTTACTCAGGA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GTATGCGTATACTATC	ref_2028_RC	101	28	108	92	20	79	32	84	49	70
AAACTTTTCCCAATTC	ref_2028_RC	261	96	298	280	112	218	90	275	87	259
GCACATTTACGCATAC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ACCTGGCGCCGCAGTC	ref_2028_RC	43	9	69	66	4	55	11	43	7	37
CGTTCCGCTCATGCAG	ref_2028_RC	49	13	56	54	13	71	15	46	16	37
TATAACCACTCGCGCA	ref_2028_RC	96	38	121	83	40	71	34	78	48	79
ATCTCACTTATATTAT	ref_2028_RC	280	91	336	292	56	243	111	246	93	213
CGTCCTGGTTCGTGGA	ref_2028_RC	93	45	133	95	36	108	29	98	54	78
TATGACCACAACAGCT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ATGCCAGTAGGTGTTT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CCGGCCCGTGTTGTAT	ref_2028_RC	10	67	22	22	84	16	103	19	80	15
CAGTTGCACTTGACCA	ref_2028_RC	60	35	91	79	36	69	20	76	37	58
AAATCGTTTAGTGGCG	ref_2028_RC	6	2	5	13	3	6	5	7	10	5
TCCACGCGCTATCGTC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
GGTTCTAGAACAGTTG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGCTTCTAGTGCA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TCTGTGGTTTAATTGT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CGGGCCGGTAAAGTCG	ref_2028_RC	72	22	76	65	16	51	27	59	17	49
GTCAAGAGTATTGGAC	ref_2028_RC	237	91	295	306	70	262	68	230	103	230
ATAACTTATATCGAGT	ref_2028_RC	204	85	268	210	84	201	91	247	102	186
CTATCTTTTAAGTTGT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
ATCGCTAGAACTTTGC	ref_2028_RC	62	34	82	77	33	84	37	85	43	60
TGCTTGCGGTGGCAGC	ref_2028_RC	99	32	103	104	32	89	35	110	38	90
GCAGTCTTGCCAGGTA	ref_2028_RC	174	55	181	210	68	134	67	175	55	156
CGTTGTTATTGAACCA	ref_2028_RC	176	50	167	156	64	132	65	153	82	155
GCACAACGGCGTCTTT	ref_2028_RC	33	9	28	23	18	25	13	21	10	32
ATTTCTAACCAACATG	ref_2028_RC	35	19	52	47	25	41	17	29	35	39
ATATAGTTCCACCATT	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CGTTGACCCGGGGCGT	ref_2028_RC	170	67	206	207	82	189	81	176	84	161
AGGATTTATAGGTGCG	ref_2028_RC	187	73	239	166	47	187	72	150	56	150
CTGCCTTAATATTTAT	ref_2028_RC	37	7	38	29	14	23	7	24	13	22
GCAGCAGATCTTGGCT	ref_2028_RC	60	15	56	53	15	46	15	47	23	54
ATCACTTTTGTATCAT	ref_2028_RC	16	3	11	8	2	6	4	5	5	6
TTCAGCGCTTAATATT	ref_2028_RC	109	51	141	126	68	114	84	114	82	92
CCTTTCGGATCGCACA	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
CTGTTAGCGATTCACC	ref_2028_RC	0	0	0	0	0	0	0	0	0	0
TCAAGTAGTTACGACC	ref_6085_new	79	146	89	77	147	56	136	66	135	66
TCATGAGAGCCTCCTT	ref_6085_new	8	24	23	7	30	11	31	7	35	9
CGGTATGTTCGTCTGG	ref_6085_new	6	22	13	8	11	9	25	14	30	7
GGGCCCGGGACTTTTG	ref_6085_new	9	11	6	4	8	9	7	2	16	1
TGACGCCCGTACCCCG	ref_6085_new	15	20	11	15	21	15	13	18	14	22
AGTCTTCCCCTTGGTC	ref_6085_new	0	0	0	0	0	0	0	0	0	0
CTGTTAGCGCATGCGA	ref_6085_new	27	31	30	16	44	37	28	21	49	30
TGTTATTCTTCGTTGT	ref_6085_new	77	71	93	80	81	60	73	59	86	61
CATGTACTTAGTTGGA	ref_6085_new	9	11	23	8	21	9	20	13	20	17
ATGGGTCCATTGCTGT	ref_6085_new	21	24	20	21	16	17	19	31	25	17
CTTCTGTGCGCCGTGT	ref_6085_new	14	35	31	19	30	28	39	28	43	12
TTTACATATTTCATGG	ref_6085_new	68	57	67	49	63	57	66	40	58	45
TCGTCCACTCCCCTAT	ref_6085_new	2	23	2	3	21	1	19	0	25	0
AATTTCTAAGATTGCG	ref_6085_new	4	11	10	8	7	14	13	7	5	9
CCTGGTTCTCTATATG	ref_6085_new	4	16	4	5	21	1	7	1	15	1
TAAGACACTTGAAACG	ref_6085_new	14	14	16	7	7	8	12	6	8	11
GTCGCCTTCCCGTTTT	ref_6085_new	35	35	31	36	42	20	37	25	47	28
TGATGCCCTTTAAGCC	ref_6085_new	0	0	0	0	0	0	0	0	0	0
GTCCTCTTAAGTCTAA	ref_6085_new	30	42	29	28	35	33	36	28	38	37
TGTTCACCCAAACAAG	ref_6085_new	68	82	75	62	80	66	78	61	102	64
CGCCGGGGGTGACTTA	ref_6085_new	24	27	36	23	29	26	49	31	37	25
CCCTCGAAGGGCGGTT	ref_6085_new	12	36	20	17	32	16	51	18	21	14
TTGCACCTGAAAGTTT	ref_6085_new	8	8	8	18	17	6	11	3	8	6
TGTGATCAACAAACTC	ref_6085_new	1	4	4	1	4	0	7	4	8	7
CTACTGCCTACCGTGT	ref_6085_new	14	27	19	23	25	11	21	15	36	14
TTTCATGACTTTTGGA	ref_6085_new	43	37	46	32	38	35	42	29	57	21
TTACTAATCAATTACA	ref_6085_new	48	63	74	54	60	45	75	33	70	35
GCTTTAGCTTCTGGGG	ref_6085_new	29	40	56	46	47	40	63	47	59	38
AGGCAGACCTTGACGA	ref_6033_new	18	36	43	10	21	22	34	18	32	21
TACCAAGTCTCTGTCA	ref_6085_new	49	71	76	62	63	50	74	53	77	52
TCGGATGGGCCCGGTT	ref_6085_new	5	6	5	2	1	3	0	0	3	3
AACCACTGGGCAATCG	ref_6085_new	10	18	23	14	17	12	23	8	12	14
GCATGCGCGACTATAA	ref_6085_new	8	9	15	7	5	12	15	9	10	10
GGGTTCTTAGTGGTGG	ref_6085_new	115	139	164	121	170	130	174	117	169	101
ATTTTGCCACCCCCAT	ref_6085_new	5	5	10	6	15	2	7	2	8	6
TGATTCAATTAGTATT	ref_6085_new	23	17	30	19	24	18	33	23	30	18
TATTCGTCCAACCCAC	ref_6085_new	101	181	119	82	138	91	155	82	144	59
GGGTTTATGCGCCATG	ref_6085_new	46	54	63	38	54	39	39	34	70	34
GGGCGCTCGACTGCAA	ref_6085_new	7	15	11	12	12	16	21	10	9	10
GGGTCCTTATAGGAGA	ref_6085_new	7	12	10	11	11	5	14	10	21	10
CTTTCTGCTCTTCACG	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TCCCCTGGCTCGTCCT	ref_6085_new	20	25	20	15	29	13	30	8	47	12
GACTGCGGCGGTATCA	ref_6085_new	22	18	21	22	26	7	24	20	23	20
ATGGAGGCTCCACTAA	ref_6085_new	27	30	26	16	39	19	21	16	27	24
CTAGGTCGTATGGTTA	ref_6085_new	65	140	91	89	126	78	143	85	113	69
ATCGCCAAGAGGTCAC	ref_6085_new	0	0	0	0	0	0	0	0	0	0
GTGATGTATGCGGATC	ref_6085_new	54	54	69	39	68	56	65	54	87	43
AGATTTGGGTAAATAC	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TCGGCTAGTATCTCCT	ref_6085_new	4	7	1	0	7	0	2	1	1	1
GTAAGCACCAATAGGG	ref_6085_new	4	7	8	5	8	15	13	5	7	6
AGTTTCCCTTGGCTCG	ref_6085_new	7	8	6	4	10	4	7	0	1	4
ACAGTAGTATGTGGGG	ref_6085_new	115	134	113	93	142	85	155	94	132	84
CATTCCCTCTATACCC	ref_6085_new	8	18	7	8	17	8	10	3	24	7
TCTCATTGACCGTGGC	ref_6085_new	4	9	2	4	10	0	9	6	23	0
TGCACATTAATGTGTT	ref_6085_new	26	32	35	29	27	25	35	13	36	19
GAAGGGAATTAAATTC	ref_6085_new	42	59	50	33	60	65	60	45	57	30
CTTTTGATTTTTTCGA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
AGACGTCATTTTGAAG	ref_6085_new	11	20	20	19	19	20	23	17	14	18
ACGACCTTGCAACTCA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCGATTAATGA	ref_6085_new	8	12	13	9	13	3	5	6	9	9
GCACTTAACCGTTTGA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
ATCCGTGTTGGGCTCC	ref_6085_new	26	39	26	32	38	29	34	20	35	27
AAATGACGTCCCCCAT	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TGTCTAAGCGCAGGGC	ref_6085_new	43	74	54	50	77	37	72	58	73	56
GGATGGTATGGGAAGT	ref_6085_new	7	17	8	13	9	10	12	17	8	4
CCATATTGTTGTTGCT	ref_6085_new	127	154	195	136	206	146	158	141	178	149
ACTTGCCGTTTGGTGT	ref_6085_new	15	28	29	23	33	17	32	12	34	16
ACTCCCTTAGCTGGCG	ref_6085_new	7	8	4	5	12	7	9	3	14	2
GGGCCCTCTCTAAACG	ref_6085_new	41	34	26	32	50	14	26	26	37	19
ACAACCGAGTCGTCTC	ref_6085_new	10	26	14	12	28	7	22	15	41	6
GGACAGTGCGCCGCTT	ref_6085_new	16	16	10	12	21	17	12	5	15	8
GTGATATATCACGACG	ref_6085_new	0	0	0	0	0	0	0	0	0	0
AGTACACTCCGGCCGC	ref_6085_new	0	0	0	0	0	0	0	0	0	0
GGCTATAGGCTGCGCG	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TACCGAGTACGGGACA	ref_6085_new	15	20	21	27	21	11	22	19	29	24
AATGTGCCGGTCGCCT	ref_6085_new	78	122	121	100	96	85	136	83	108	78
ATCTTACTTCGGCATG	ref_6085_new	34	29	40	34	42	21	37	37	35	29
GAGTTGGACCGTGTCG	ref_6085_new	0	0	0	0	0	0	0	0	0	0
CCCGATGGGTTTTCGG	ref_6085_new	68	88	52	46	71	61	79	42	68	50
TCTTGAATTGTCGGTT	ref_6085_new	161	220	182	138	230	165	206	142	229	134
GTATATTAGCTTTAGA	ref_6085_new	2	1	3	3	2	0	3	3	2	0
CTCAAATCCTAGGGCT	ref_6085_new	31	80	43	34	78	44	76	42	73	57
TTCTGGTAATGTGAAG	ref_6085_new	44	61	76	41	65	46	69	41	30	36
GGAGGCACCCCCGTCT	ref_6085_new	2	2	4	1	8	1	7	0	9	3
GACTGTTTTCTTCTTA	ref_6085_new	26	20	23	18	29	17	24	12	32	7
CTGGTGCATCAAACCA	ref_6085_new	93	115	115	89	112	84	112	67	113	71
ACAGAGCTACGGTAAT	ref_6085_new	14	9	11	4	17	17	13	7	12	15
TCGTAGAAGAGCGTGT	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TTGCCCGGGACACTTA	ref_6085_new	18	32	28	31	27	20	38	13	19	17
ATGGGCTAAATCGTAA	ref_6085_new	25	41	42	17	34	23	39	27	30	24
GATCGTCCCTAAATCG	ref_6085_new	0	0	0	0	0	0	0	0	0	0
GTTCGTGCTACCTCGT	ref_6085_new	3	16	7	5	5	11	15	9	15	6
GGGGGTTCCAGATGGT	ref_6085_new	5	1	1	3	3	1	5	4	10	5
ACTCTACGATCACAGA	ref_6085_new	18	24	28	12	26	27	17	37	27	20
CCTTGTAGCCGATACA	ref_6085_new	9	18	8	5	11	7	17	7	22	6
ACTCTTGTAATCCGCA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
AGATGGGAATTCTATG	ref_6085_new	16	29	29	18	28	33	29	25	40	19
TTTTATTCTCCCGGGC	ref_6085_new	7	11	8	10	8	5	8	2	4	11
GTGCACTCTAGTGGGG	ref_6085_new	13	16	8	8	23	17	22	13	10	13
GGTCGGACTCTACTTG	ref_6085_new	31	39	30	24	25	30	37	24	28	14
AAACTTCGTACTTGAA	ref_6085_new	103	105	104	97	128	85	126	87	124	103
ATCCCACATAATTTGC	ref_6085_new	89	135	103	111	112	92	122	82	115	82
GTGTATTGAATATTGG	ref_6085_new	22	24	31	28	26	9	18	17	42	21
CTTGGGACGTATTCCA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
GAGTTATCACCTCACA	ref_6085_new	93	132	127	101	134	102	164	87	119	103
CACCTCTTATTATCTC	ref_6085_new	165	181	165	154	170	170	224	138	208	139
TCGGCTAGACACCCGC	ref_6085_new	5	6	1	4	8	2	1	3	9	3
TAGGTCGCTTCCTCGG	ref_6085_new	18	30	21	20	33	9	41	21	34	16
CGGAGGAGTCAAGGCC	ref_6085_new	8	12	21	16	12	14	22	9	14	13
CGTTCGTCTAGCTCGA	ref_6085_new	21	32	29	24	22	17	25	20	30	23
GGTTGTCCGTACATGC	ref_6085_new	14	26	21	17	14	9	23	12	22	12
CTCATGAGGCCCTTGT	ref_6085_new	11	14	14	13	26	11	25	16	15	11
AGTTCATTCACGATTC	ref_6085_new	31	45	32	41	29	35	35	25	24	20
TAAGGTCTGATGGAGT	ref_6085_new	8	8	16	10	16	15	14	7	21	8
TTGCATTCTGGTACTC	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TCCCACTTAGTAAGGG	ref_6085_new	164	203	205	169	235	158	216	174	265	174
CGTATCTTCCCATCGT	ref_6085_new	41	43	39	26	46	23	35	23	47	25
TGTACCTCGCTCACAC	ref_6085_new	2	1	1	0	11	0	4	3	4	2
TTTGTCTATTACCCCC	ref_6085_new	3	7	0	2	4	2	2	5	9	1
TGGACCTAATGACCTT	ref_6085_new	0	0	0	0	0	0	0	0	0	0
AAAGACCCGTTAGACG	ref_6085_new	90	113	122	93	132	102	148	80	113	85
CGTCATGCTCTGCACG	ref_6085_new	210	255	251	239	308	226	307	198	282	185
GCTTAGGAGCTTGGCC	ref_6085_new	20	30	29	31	43	23	44	22	38	19
CTAGACGCACTGTCCG	ref_6085_new	12	13	8	14	10	6	11	7	11	13
CTCTATTCTATCCCGA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
TGATTTCTTACTGCAA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
CTACTGCATCAAGTTA	ref_6085_new	0	0	0	0	0	0	0	0	0	0
GATTGAACAGTCAGCA	ref_6085_new	54	65	69	72	76	64	67	61	71	57
TTTTTACAATGAACGG	ref_6085_new	28	49	56	46	50	35	44	38	55	40
TGGCTTGCGTCATCCG	ref_6085_new	8	8	7	6	9	5	6	7	5	10
CGGACCACGGGTTTTC	ref_6085_new	29	47	53	22	56	30	59	31	39	34
CCGTTTCTTAGGTATG	ref_6085_new	15	23	27	9	21	15	29	19	18	15
TTTATTATAGCTGTGG	ref_6085_new	0	0	0	0	0	0	0	0	0	0
AGGTTATGATCATTTG	ref_6085_new	1	5	0	5	5	0	2	5	2	4
CGAGGAGAGTTTGGAT	ref_6085_new	61	93	65	70	72	73	105	69	79	66
CGATATCCCGTGCCTG	ref_6085_new	3	4	4	4	1	3	5	2	2	1
AAACAGTGGTTACATA	ref_6085_new	48	52	37	29	38	42	60	26	51	22
TATCGTCGTATTATTG	ref_6085_new	56	81	81	58	76	64	73	58	77	43
TTACAACGCTTTAGGA	ref_5854_new	17	23	13	18	23	9	30	9	31	12
TGCTAGGATTCTGGCC	ref_5854_new	6	5	8	11	9	8	6	2	6	3
CACTGTTTTCCGGTAC	ref_5854_new	12	17	4	10	17	4	20	3	11	5
CGGTATCGCCCCCGTA	ref_5854_new	76	146	69	79	165	78	172	69	186	82
AGGTGGGGGGTAGAGG	ref_5854_new	21	29	15	22	23	17	21	19	25	18
TGTGTTGGTCCGGCAG	ref_5854_new	23	31	26	20	22	27	38	25	21	15
TCTTGAAGGTAATATC	ref_5854_new	1	4	4	0	0	0	3	1	0	0
GGGATCGCAATCGCCT	ref_5854_new	2	1	6	1	2	2	1	2	1	2
GTCCGACATTCCTAAT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CCCGGCTCATCATGTC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
GTTTATCGTACCTCTC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ACATAATACCACCCAC	ref_5854_new	2	5	2	8	4	2	10	6	6	10
CGCTGATAATAGGGAC	ref_5854_new	1	4	4	3	3	3	3	4	5	1
AGCGCAGTCTGGGAGT	ref_5854_new	36	57	39	30	52	42	73	32	85	42
TTAACTGCTTGTTAGA	ref_5854_new	65	110	71	78	119	44	91	72	106	63
ATCACCCGCCAGGGCT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
GCCGGATTACTCGCTT	ref_5854_new	1	0	0	1	2	0	4	1	3	3
CGCTACGCCCCGTATC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
GAGACACTGTAAATTC	ref_5854_new	17	11	10	11	13	8	20	10	13	9
AGCGCCGAACATACTT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
TTAGGCTTTCTTGACC	ref_5854_new	79	118	94	63	115	78	128	71	125	72
GGCCTTCATCTAACTC	ref_5854_new	40	43	41	20	36	44	51	44	46	38
TTGCTTTCAACATTTA	ref_5854_new	40	72	53	41	54	45	61	43	73	40
AGGCGACCTTCGCGGG	ref_5854_new	44	58	57	50	59	38	60	44	86	43
CGACAACTAGCGGTGC	ref_5854_new	78	154	69	71	149	96	130	80	159	85
GAAACAGATTACTTTC	ref_5854_new	6	12	8	11	16	13	9	10	10	2
CAACGTGGTTATTCCG	ref_5854_new	0	0	0	0	0	0	0	0	0	0
GTCCTGAAAACCAATT	ref_5854_new	27	32	35	23	61	33	40	18	41	24
AAAATCGACGTAGCCA	ref_5854_new	28	35	40	36	58	31	47	30	57	31
CCGTATTAGTCTTCCC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ACTCCCACTGTTGGCA	ref_5854_new	65	243	72	63	257	43	253	48	268	37
GGTGTTAAGATGAGCG	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ATTACGACTACAAGTC	ref_5854_new	9	28	30	13	37	19	23	12	28	12
TGGCGTCGTCTCTTGT	ref_5854_new	4	4	2	3	6	2	4	2	2	2
GTCGCGAGCTATTTTT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ATAAGTCTCAGATTTG	ref_5854_new	77	100	76	63	103	61	94	83	105	69
GCTTATGTACAGATCG	ref_5854_new	10	26	14	13	25	10	25	22	27	11
TATCAAACCGCTGAGG	ref_5854_new	9	15	14	16	28	10	13	13	18	12
TGTTTAGACCTGTAAT	ref_5854_new	38	67	61	35	97	59	80	41	69	38
GGATCAGGCCTGTAAT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
TATCGAACATTCAATG	ref_5854_new	6	14	9	12	15	12	24	5	20	5
AACGGCCACAGAGGTC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ATTATTATGCGCATCA	ref_5854_new	38	65	41	44	74	32	53	24	76	39
TTAGCTTAGTGCATAA	ref_5854_new	13	23	18	11	26	14	40	22	25	9
GTGCTCTCGCTCTAGT	ref_5854_new	51	67	54	53	73	40	76	40	101	58
AGTGTGATTTTTATTC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CGTTGCACTCTCTTGT	ref_5854_new	56	124	77	72	112	67	122	66	128	56
GCAGAATTAACGAATG	ref_5854_new	0	0	0	0	0	0	0	0	0	0
TGGAGACTGTGACAAG	ref_5854_new	0	0	0	0	0	0	0	0	0	0
GAGAACGTGAACGATG	ref_5854_new	17	18	18	7	16	12	15	10	13	14
TTCGATTCGATCCTAG	ref_5854_new	0	0	0	0	0	0	0	0	0	0
TTAAGTTGGCAAGATT	ref_5854_new	24	32	30	32	29	32	39	16	29	25
TGCAGCGGTAGGGCCG	ref_5854_new	22	38	35	16	41	27	38	17	41	23
GATTTGTCTATAAGTT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CCTTCGACAGTCACTC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
AGGACTTGGAGTCAGG	ref_5854_new	24	41	30	23	35	22	39	20	39	27
TTATGCCTTTTCCACC	ref_5854_new	53	79	89	83	87	66	105	72	108	71
TAGTTATTTTTTTATC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CTGTGTGAACTTTCTA	ref_5854_new	34	31	31	31	43	34	61	42	51	22
AATGCTCCGTTCGGCG	ref_5854_new	34	41	30	26	30	27	36	26	29	25
CTACCACTAGGAGTCC	ref_5854_new	128	264	136	125	256	110	269	114	267	96
GGTTTTCCTGGCCGTT	ref_5854_new	2	15	21	12	13	10	24	7	8	9
GTCTCTCCTTCTTTGC	ref_5854_new	22	44	30	21	41	31	34	18	40	20
ATACAGCAATGCCAGG	ref_5854_new	38	40	35	23	42	25	46	26	66	25
TCGGCCAAGACGCAAG	ref_5854_new	10	29	15	20	23	13	29	11	38	10
ATCCTTATCTGGTTTG	ref_5854_new	18	24	12	17	26	12	30	24	27	13
ATGTGTGATCACTCTT	ref_5854_new	31	48	38	32	43	32	42	26	46	22
TTATCTAAAAGCTATA	ref_5854_new	47	54	39	46	59	33	61	29	45	43
CCGGTCGGTCATGGTA	ref_5854_new	0	0	0	0	0	0	0	0	0	0
TTTTGGGTCAACGGAC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CTTTCTGTGCACACCC	ref_5854_new	11	18	17	9	42	20	15	7	14	10
GCAACGTTTCCCTTTC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
TGTCCGGTCGCGGCCG	ref_5854_new	31	39	42	23	59	29	49	29	41	23
TGTTGTATGAGCGTTG	ref_5854_new	0	0	0	0	0	0	0	0	0	0
TGGTATAGCAGGTGAC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CGCGAATATCATTATT	ref_5854_new	2	5	2	6	2	4	2	2	3	1
CTTATAATTTCGATTC	ref_5854_new	5	5	9	5	15	5	10	7	15	3
TTTCTAATGTATCCTT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ATTAATAGTTCGACAT	ref_5854_new	17	47	17	15	32	11	24	19	32	15
TGCCGGTAAATGTTTC	ref_5854_new	8	13	15	7	14	7	17	8	15	4
ATCGTGGTTTTAAGGC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CGACAGGGTCACGCAT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
GCAAAGAGTACGTTCC	ref_5854_new	12	20	22	16	29	17	27	7	25	15
TGACCATCCCTCGGGC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CTGCCCGTGGATGGTC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ATCTTGCGCACTCGAA	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ACTTGCTTTGCTAATC	ref_5854_new	66	107	67	59	77	56	95	71	111	67
TTTAGAATGCTCGAGG	ref_5854_new	63	106	88	94	99	57	115	73	127	62
CGGCGTCGAGTGGGCG	ref_5854_new	19	66	28	40	79	11	72	8	76	27
TACCGATATGTGCATT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
AAATGTAGCACATTGG	ref_5854_new	54	72	89	66	92	43	82	43	90	63
TCAGTATCTAGATCCA	ref_5854_new	0	0	0	0	0	0	0	0	0	0
ATAATGCTCGGCCTAC	ref_5854_new	0	0	0	0	0	0	0	0	0	0
CACATCTGTCTGTATT	ref_5854_new	0	0	0	0	0	0	0	0	0	0
GTGCCAAGTTCTGGTC	ref_5854_new	25	28	36	18	30	26	37	18	44	23
CTCTGTCGTTGAACAT	alt_4925_upstream	23	2	19	14	6	24	11	7	7	11
CACTGAGTCAATCTTC	alt_4925_upstream	26	10	27	24	5	22	7	25	14	13
ATACGGAGGTTTTGTA	alt_4925_upstream	17	13	27	10	5	21	5	11	5	12
TCTTTAAGTCGGTTTC	alt_4925_upstream	17	8	27	27	11	22	11	24	14	13
TTTTATGCGGGTTCTG	alt_4925_upstream	67	48	117	85	39	66	57	62	52	70
ATGCCAATTAACATTG	alt_4925_upstream	0	1	4	1	0	1	1	3	0	0
CTCGTGATGGGCTACT	alt_4925_upstream	27	14	44	17	9	34	15	29	14	21
TATATGATCTCCCACG	alt_4925_upstream	57	36	92	46	39	55	47	63	45	79
CTATTACTGCCAGGCA	alt_4925_upstream	13	4	9	9	12	9	10	10	9	12
CATGTGCATGGCCCAC	alt_4925_upstream	24	6	27	51	15	18	9	21	8	16
ACAGGACCGTACATAT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TATTATCGGATAGACA	alt_4925_upstream	76	47	110	92	57	74	39	83	47	78
GGAAATGAACTGGTAT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
AAGTAGGTCTCGGATT	alt_4925_upstream	103	45	106	80	62	105	51	99	48	72
TTACTATAAACGTCAA	alt_4925_upstream	14	7	23	13	14	17	7	17	8	12
TACTTTCATGGCGTTC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCAACTTTCATCG	alt_4925_upstream	110	42	83	110	60	86	50	83	58	89
TGGCAGGGGTATCTAA	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGACCGTACATAT	alt_4925_upstream	199	148	268	212	146	190	165	201	165	206
CTGGTTAGCTCAATTG	alt_4925_upstream	23	15	24	22	15	17	10	21	14	19
TGATCGCATTTAGGAT	alt_4925_upstream	15	16	22	20	5	10	7	29	12	16
CCAAACCGCTGTACTC	alt_4925_upstream	3	11	10	3	10	6	4	5	14	4
GTTTTACACGTACGAT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTGCTGCGTCACC	alt_4925_upstream	107	65	183	185	96	134	74	121	86	117
CTAATGTGACTTAAGA	alt_4925_upstream	142	109	233	181	91	197	104	147	110	190
GTCGAGCCGATTGCGG	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGTACCTAAGTGA	alt_4925_upstream	16	22	12	18	20	13	24	20	28	15
AATGTCGCCCCTAGGT	alt_4925_upstream	14	8	23	24	4	15	7	14	11	14
AGTATTGCGTCCTCCA	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
GACGTAGCGATAACAC	alt_4925_upstream	69	32	89	70	22	58	35	49	34	46
TAAACTTAGTCTCCGC	alt_4925_upstream	6	9	13	3	10	17	7	11	6	1
GTCATTTACAGTTGAG	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGCTTCTGTCTAA	alt_4925_upstream	34	11	44	26	15	15	24	21	10	18
AAACTATTAAGCGTCG	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TAACATTCGGGTTAGA	alt_4925_upstream	57	27	71	71	25	62	23	41	22	51
GACGTTGTATTACAAG	alt_4925_upstream	219	143	288	259	144	234	141	180	129	211
ATTTTGGATCTTTTAC	alt_4925_upstream	8	7	32	13	7	9	13	9	5	20
TGATAGGAGAGCCAAA	alt_4925_upstream	75	35	104	94	35	67	39	77	28	72
TAACTAGCCATCGTCG	alt_4925_upstream	65	30	51	61	42	31	37	50	46	48
TGCAATCAGAGCTCAA	alt_4925_upstream	107	39	127	102	51	87	56	97	56	83
TCTGGTGTAACGTTTG	alt_4925_upstream	47	28	65	47	22	51	28	45	24	47
CGTTGGTAGTGGATCC	alt_4925_upstream	248	126	255	260	115	237	128	207	122	203
AAGAAGGATGAAGTAC	alt_4925_upstream	48	24	43	41	25	56	15	36	29	39
TACGGCAATGTTATCT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCTACGTTCGTCAGCT	alt_4925_upstream	61	82	103	79	92	79	110	76	113	80
TCTATGACGGTTGGGA	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTCATGCTATGTG	alt_4925_upstream	128	57	118	89	52	90	69	107	50	94
CCAACGTAGTGTTTGT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
GGTCATGGTTTCAGAT	alt_4925_upstream	38	10	67	49	29	45	24	41	24	56
TCGTAGTCGTGTAACG	alt_4925_upstream	0	2	3	1	0	4	1	2	1	1
GAATCTTAATGCTAAT	alt_4925_upstream	380	254	507	436	243	397	221	385	277	345
GACGTAAGTCTCTGGG	alt_4925_upstream	32	11	25	27	12	23	10	23	19	18
AACTCCCCGGCATAGC	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGGAGCAGGGCGG	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGTGACCATTGGC	ref_4925_upstream	0	2	1	1	1	5	0	2	4	0
GCACTCCCTCATCCGG	alt_4925_upstream	5	30	3	5	31	8	27	9	26	4
GTGTTTAAAGGTCGTT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTTTAATTGCTC	alt_4925_upstream	8	5	17	17	7	19	5	21	8	12
AGGGTCTTATTACTCA	alt_4925_upstream	7	1	7	5	2	4	10	10	7	13
GTTCAGTATTATCGAT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCTTCATGTCCCG	alt_4925_upstream	67	37	60	62	36	47	26	54	32	31
GTTGTACACACTTGTT	alt_4925_upstream	95	64	104	122	49	112	59	104	83	87
AAATAGCAACGTCAGA	alt_4925_upstream	170	98	199	216	88	166	122	152	132	149
ATTTTAGTCTTTCAGA	ref_4925_upstream	27	17	24	34	17	28	25	20	21	32
ATAGAGTTTGTAACTT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTACTGCCTGATT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CTCGATTCTCAGTCAT	alt_4925_upstream	153	86	170	123	84	135	85	124	92	129
CTGAGCAATGCGACAA	alt_4925_upstream	60	28	49	53	41	61	26	40	36	54
TTGTGACCTTTCGCGT	alt_4925_upstream	170	102	234	209	80	191	101	244	106	155
CGCTAAATCGGCGTCC	ref_4925_upstream	25	33	23	31	23	23	28	27	34	18
AGCGGTATAAAATTAC	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCTCGATACGGGC	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTCCAACCCGTTC	alt_4925_upstream	37	19	33	46	26	35	26	38	21	36
CTAATGTATCCTAGAT	alt_4925_upstream	39	30	42	39	33	43	18	40	23	30
CACTAATTTCGATTAT	alt_4925_upstream	44	25	53	65	41	68	36	49	45	52
CCTTATGCATCCCTTT	alt_4925_upstream	43	29	52	51	37	42	22	59	32	53
GCAGTGCGTTTGAGGC	ref_4925_upstream	235	109	206	188	109	170	113	151	128	187
GAATGCTCAATATAGT	alt_4925_upstream	34	21	56	35	23	41	37	31	21	30
AGTGTTTTCCATCTTC	alt_4925_upstream	3	7	11	6	2	4	2	9	1	4
TCCCTTCGCTAGGTCG	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCAGAGTGTCTCTTTT	alt_4925_upstream	76	39	77	60	50	41	33	58	38	62
GTTAACATTTTATTTC	alt_4925_upstream	68	26	71	51	36	50	39	55	37	55
ATGGCTGTGCGCTGTG	alt_4925_upstream	30	17	51	45	21	36	17	30	23	30
TATAATACCCCTGGAT	alt_4925_upstream	94	54	92	110	47	86	38	71	57	84
CTTCGCAGGTAAGATA	alt_4925_upstream	142	78	146	152	81	140	80	111	68	126
CAAGTGGACTTAGCTA	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAGTTCTTGTCCG	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGAGGACCTCCCC	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCTGTGCTCATGC	alt_4925_upstream	45	38	56	64	38	60	30	62	34	35
ATAGATGATGCCAACA	alt_4925_upstream	88	61	147	128	64	150	52	107	40	99
TTAGGGGGTCATCGTG	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
TGATCATCAACTTTTT	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCCTATTTCTCCGGGG	alt_4925_upstream	35	11	40	35	22	23	19	20	23	32
GGGTTGTGACTAGTCA	alt_4925_upstream	50	23	60	47	31	53	32	52	27	56
GTCGCCCACCATACTC	ref_4925_upstream	28	45	29	30	32	20	35	23	33	18
TTCGCCGTAATCTACT	alt_4925_upstream	101	45	88	81	68	96	54	89	64	76
CTTCGCTTCTCGTGTC	alt_4925_upstream	61	27	65	42	26	46	32	46	30	55
TAATCCCGTGCTTATT	alt_4925_upstream	65	34	80	47	27	79	41	77	27	49
TTACCGCTCGACATTC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
GTAGACCATTAATGTC	alt_4925_upstream	0	0	0	0	0	0	0	0	0	0
CATCCGGGTATCACGC	ref_1587_RC	65	47	86	74	44	69	57	63	42	60
CACGACGTCGCGTATC	ref_1587_RC	0	0	0	0	0	0	0	0	0	0
TGCGGCTACCCGGCCA	ref_1587_RC	26	35	56	60	19	35	28	26	30	32
CGCTATAACCCTATTC	ref_1587_RC	16	9	12	12	19	13	15	23	5	7
CTAATTATAGGGCTAT	ref_1587_RC	429	289	553	393	302	428	323	386	301	381
AAGGCTCAGAACCTTG	ref_1587_RC	131	89	136	138	112	133	102	128	118	125
CGCTCCATGTAACATG	ref_1587_RC	0	0	0	0	0	0	0	0	0	0
CTCTGTGCGTGATAGA	ref_1587_RC	5	10	7	10	15	8	1	12	3	8
TCTAGTTTGGTAGCTG	ref_1587_RC	29	9	30	22	22	20	26	22	17	21
TTTCCTCTGTTCCCCT	ref_1587_RC	0	0	0	0	0	0	0	0	0	0
CCCATCGATCGGGCTA	ref_1587_RC	151	310	190	132	270	120	284	140	295	126
CGGACGTTGTAGTTTC	ref_1587_RC	44	39	65	51	34	44	50	44	56	45
CATCTGACGCCTATCG	ref_1587_RC	26	22	35	34	32	35	30	40	29	32
ACAGTGGTGGTTTATT	ref_1587_RC	86	46	80	72	63	66	61	52	67	74
CGATCCCTGTGAATAT	ref_1587_RC	29	17	32	26	29	32	26	30	24	35
TTCTGCTTTATGATTT	ref_1587_RC	7	9	10	15	12	13	5	17	5	14
GGCCATTTCACGAATT	ref_1587_RC	209	168	271	209	127	229	172	196	162	211
TGTAGAAAGAATCAGC	ref_1587_RC	30	24	25	30	19	30	17	33	21	27
TGACCCTGTTGGCGTT	ref_1587_RC	69	44	89	52	25	52	44	61	63	63
GATCCGCAATGTTATA	ref_1587_RC	31	22	45	37	28	37	33	49	29	49
CTTAGTTACGTAATTA	ref_1587_RC	44	17	36	31	17	31	28	36	30	38
TATATATTTTTTAATT	ref_1587_RC	0	0	0	0	0	0	0	0	1	0
TGCGTCCTTTAATCTA	ref_1587_RC	61	52	78	53	33	65	50	50	53	57
TGTCCTTCTCACTTCG	ref_1587_RC	87	56	97	84	62	80	52	70	63	70
TACTACTTGTGCAATC	ref_1587_RC	47	18	37	26	27	23	34	23	20	32
GTAAGGTTTTGTTTAA	ref_1587_RC	73	49	67	58	44	78	68	47	40	51
GGAAATATCATCCTTT	ref_1587_RC	45	24	47	44	23	51	25	52	41	41
GAGCTGCTCCCAGAGG	ref_1587_RC	87	61	98	79	68	83	59	100	68	92
TTTAGGCAGTTCTCGT	ref_1587_RC	3	2	11	12	13	6	6	10	4	2
TCTACCTCATCATTAT	ref_1587_RC	292	248	354	270	295	244	276	277	283	256
CTACGGTCTATGGGTT	ref_1587_RC	27	20	39	38	26	31	21	26	20	26
GCGATTGGGCGTGGCA	ref_1587_RC	0	0	1	0	0	0	0	0	0	1
AATTGTGCTCCGCCCG	ref_1587_RC	0	0	0	0	0	0	0	0	0	0
AATGCAATTCTTTGTT	ref_1587_RC	0	0	0	0	0	0	0	0	0	0
ATGCTTCGGGAATCCT	ref_1587_RC	10	5	4	11	6	13	5	4	7	4
TTGTGAGTTGCGTCCT	ref_1587_RC	66	33	70	52	59	55	43	50	36	55
GGGGTCGGTTTCCAGA	ref_1587_RC	0	0	0	0	0	0	0	0	0	0
TCCTTGGGTATTCGTG	ref_1587_RC	86	66	75	74	68	83	68	76	64	59
AAAAAGCTCATTGCGG	ref_1587_RC	21	12	26	29	19	26	23	14	25	26
ATTCCTAGACACTGCC	ref_1587_RC	0	0	0	0	0	0	0	0	0	0
GCCCGGAGTATCCGTA	ref_1587_RC	11	9	21	19	9	20	7	17	7	10
GCAAACCATATGTCAT	ref_1587_RC	71	54	68	62	57	42	54	55	49	54
GCACTAGTCACCACAC	alt_5165_reverse	42	85	53	40	73	32	74	30	75	32
CAAAGTCAGTTTCGGC	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
GTCTATAGTATTTCCT	alt_5165_reverse	13	15	16	15	19	13	25	16	21	15
TGCCTTGTTGCGCCTT	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCATGCTGCGGT	alt_5165_reverse	35	51	38	21	33	34	54	23	48	33
TCTGAGTGATCAAGTG	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAGGGTATGCTTC	alt_5165_reverse	63	119	94	90	102	86	120	75	116	61
GTCATCGTGCTCTAAT	alt_5165_reverse	0	3	0	0	4	0	0	0	0	2
GCACTGCTCTCAGGGT	alt_5165_reverse	23	25	25	18	19	23	29	8	21	13
TGATGATCCAAAACAC	alt_5165_reverse	2	2	0	1	2	3	0	1	0	1
GGCTTCGGAAGGGCGA	alt_5165_reverse	72	85	69	73	67	72	84	50	92	59
CATTGATCCCTTTTAG	alt_5165_reverse	29	45	48	46	47	39	80	36	46	30
TGTCTTGAGAGTGGCA	alt_5165_reverse	88	88	86	88	103	62	108	81	127	63
CCGCCTCCGCAACCCT	alt_5165_reverse	13	29	14	16	24	11	23	9	23	8
GCTGTCTGGTCTGTGA	alt_5165_reverse	70	102	87	78	107	64	110	79	122	68
TTTTTGAGCTATATTG	alt_5165_reverse	240	349	248	187	341	207	352	200	354	199
CTATGGGGGGATGCCG	alt_5165_reverse	156	215	210	204	279	152	282	160	263	145
GGTTTATGCATATCGA	alt_5165_reverse	36	42	26	20	39	37	30	20	35	22
GCTGTGCTATACTCAG	alt_5165_reverse	25	44	47	26	56	34	59	38	48	33
CGCTGGGTCACGGGTT	alt_5165_reverse	11	16	19	13	34	18	21	21	33	11
GTACATCGGCAGGTGA	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
GTGTACCGATGGTCAT	alt_5165_reverse	7	8	16	9	9	6	16	8	19	7
TTCCATCAGCAGATAG	alt_5165_reverse	11	11	2	17	15	10	28	9	17	5
CCCGCGCTCTACTTTG	alt_5165_reverse	40	56	43	34	52	32	48	32	60	22
CACAGCATCCTAGCGT	alt_5165_reverse	6	4	4	7	4	3	6	5	17	4
CTCCTTGAGCGTACTG	alt_5165_reverse	8	25	14	16	39	15	33	12	31	9
TGTTCTGTTCACCGCC	alt_5165_reverse	46	34	46	36	33	43	49	25	45	19
CGCTTTTTACCATTAG	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCTGAGATGACGC	alt_5165_reverse	47	50	58	43	46	53	53	43	68	49
CCTGGCACTTCAGTAG	alt_5165_reverse	38	79	54	51	61	32	93	38	78	43
CATCGAAACTCGTGCT	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGGTTGGCGCATA	alt_5165_reverse	41	70	68	49	70	58	78	45	68	59
CGTTCGAGGCTCAATA	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
ATATGTTACCATTTAG	alt_5165_reverse	38	51	52	28	42	43	40	40	62	39
AAGTTGCCCAGTCTCA	alt_5165_reverse	21	24	22	29	37	13	30	22	28	20
TCGCCTGCACCAATTT	alt_5165_reverse	11	21	10	18	21	12	23	11	25	13
CATTGTGGTTGTCTAT	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
CTTATTCTAGGTTAGT	alt_5165_reverse	27	46	43	27	38	45	46	32	44	32
TGAGGGTATGACTTCA	alt_5165_reverse	19	19	26	27	17	26	26	21	39	13
CCTTCCTGGTCCGCGC	alt_5165_reverse	25	32	31	17	42	27	33	36	50	20
CCTCGCTGAACGTCGA	alt_5165_reverse	13	41	33	23	56	26	47	31	49	11
TTATCCGTCACCTTAG	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
TCATTATTTTTCATTT	alt_5165_reverse	33	35	41	17	34	27	32	36	42	26
GGATTTTAATAATTGC	alt_5165_reverse	21	39	22	17	42	14	38	21	42	26
TTGCGTGGCAGTAAGC	alt_5165_reverse	10	21	15	11	13	6	8	12	15	15
ATCCTAATTTTGTTTG	alt_5165_reverse	45	37	35	48	54	39	58	37	37	40
AAGGCTGTACTGACCA	alt_5165_reverse	16	22	39	32	43	28	44	28	21	19
GCCTGCTGCTCCCCAG	alt_5165_reverse	3	4	6	4	6	6	10	4	3	3
CTATGGGGGATGCCGC	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
GGCGCGCTGTCGATAG	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTGCGAAAATATC	alt_5165_reverse	43	72	45	39	42	26	48	23	77	32
CCGAATATTTATGACA	alt_5165_reverse	10	17	11	14	17	8	10	12	29	9
GTAATAACTAAAATAA	alt_5165_reverse	8	13	14	12	6	5	16	12	15	9
ACCACTAGGCCCTGCA	alt_5165_reverse	30	28	38	32	29	33	40	26	31	19
GGTTGCTATACACTTC	alt_5165_reverse	67	102	83	78	118	74	151	77	138	58
TCCATTCCTTTATTCC	alt_5165_reverse	22	37	43	36	28	42	33	28	49	40
GATCGAACGGATCGCT	alt_5165_reverse	25	48	29	23	38	31	38	37	43	28
CTGTTTTATGCAGTCT	alt_5165_reverse	8	23	17	12	24	21	32	20	29	12
TTTTTAACCTTTGATT	alt_5165_reverse	6	13	5	3	9	10	9	5	8	6
GAGATAGGCGTCCATA	alt_5165_reverse	0	0	0	0	0	0	0	0	0	0
GACTATTATGAGTCCT	alt_5165_reverse	47	70	60	54	56	50	82	38	76	30
GCCTACCGTCGCCTCG	alt_5165_reverse	23	28	30	31	40	27	59	33	39	28
AAAATTTGCATACTTC	alt_5165_reverse	8	16	11	8	13	6	11	5	10	12
ACCCTTCGTTTTTCTC	alt_5165_reverse	91	111	86	85	75	87	100	83	89	95
TCCTTACACCAGAGAT	alt_5674_new	0	0	0	0	0	0	0	0	0	0
GTTATTACCATCTAGT	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TCATTTCCTTGCATTT	alt_5674_new	10	9	5	3	5	11	7	4	12	11
TCACCTGTCCCTACCA	alt_5674_new	32	41	25	25	29	22	49	27	46	17
CGGTAATCCCAGATGT	alt_5674_new	33	50	43	42	40	37	41	44	46	42
TTGATATGGGTGGCGT	alt_5674_new	88	86	127	91	92	69	106	74	85	80
ACGTGAGAGTCCTTAA	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TGATCGGACAAATGTA	alt_5674_new	57	85	77	108	96	69	91	80	108	70
GGTTACCTTTATCTTG	alt_5674_new	35	40	45	53	51	43	46	32	41	34
GAATAAGTTAATTATG	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TTTTGGACTAGGCGTC	alt_5674_new	0	1	0	0	0	0	0	1	0	0
CTATGTTGAGCCAGCA	alt_5674_new	33	52	38	37	43	32	28	35	42	39
GCCGCCTGGAGTGCTC	alt_5674_new	18	40	30	21	42	22	23	22	33	29
GACCATGGATTCTCCG	alt_5674_new	25	38	43	26	27	33	33	28	31	28
TGCTTATCTCGTGATT	alt_5674_new	0	0	0	0	0	0	0	0	0	0
ATGTCTTCACTGGCAT	alt_5674_new	137	124	187	138	135	132	146	124	150	118
CGTTTCTGATGCCTTG	alt_5674_new	35	34	31	32	48	28	42	26	34	43
TACGTGAAGAAAAAAT	alt_5674_new	120	132	140	142	103	153	146	123	127	113
CTTACCTTAGTTAGGA	alt_5674_new	25	65	25	25	88	16	94	18	91	11
GTACGTACAGTCCACC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
CTAAACAGGGCTGCGT	alt_5674_new	58	69	93	65	92	66	93	63	94	73
ATTTGTCCTTGGTCTA	alt_5674_new	0	0	0	0	0	0	0	0	0	0
CATTCTTTAGAATCCT	alt_5674_new	63	36	76	72	53	60	61	48	69	54
TCAGAAGGCGACGGAC	alt_5674_new	0	0	0	0	0	0	0	0	0	0
GGCCTGTGAACAAATT	alt_5674_new	23	25	28	28	29	19	23	28	32	19
ATCGCCCCCCGCCACT	alt_5674_new	127	192	162	161	222	160	194	142	228	133
CGACCACGTTTGCACA	alt_5674_new	13	21	9	7	26	17	16	17	21	10
AAGTACGCTTGTGTAT	alt_5674_new	9	6	5	4	3	11	4	4	6	6
CCCGGCTAGTACTATT	alt_5674_new	24	33	12	16	23	16	21	17	28	10
CCTCTTCGAGCGATCG	alt_5674_new	12	12	3	16	16	10	13	16	22	6
CAGCACTCTTTCGGGC	alt_5674_new	0	6	1	1	2	2	3	2	1	2
GTTGGTGCCTATGTAT	alt_5674_new	37	23	23	22	27	22	38	19	33	20
AGCTTGACCACCACGA	alt_5674_new	0	0	0	0	0	0	0	0	0	0
CACAGGTGATTACAAG	alt_5674_new	12	13	12	15	15	10	26	8	8	10
GTGCATATTTGTAGAA	alt_5674_new	13	22	25	18	29	19	26	21	19	25
CGCAATCTTGCGGCTT	alt_5674_new	65	57	74	76	57	70	90	84	71	71
TATAAGGTCGCGGTAT	alt_5674_new	141	167	180	171	132	149	166	148	168	145
CCCCCTCGTTTAGGGC	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TAATTCGTATTTAGAA	alt_5674_new	60	44	79	56	40	50	65	29	42	39
CACCTGAGTCATTCCA	alt_5674_new	35	30	26	33	57	26	48	34	52	33
TTGTATATGCTTTGAT	alt_5674_new	19	18	13	16	16	14	21	16	23	11
GGACTGGTGCCGATTA	alt_5674_new	37	38	39	41	22	37	47	22	42	27
ATTGCAAGTGGAAAGC	alt_5674_new	72	96	92	82	74	75	109	81	99	55
TCATTTTCTGTAATGC	alt_5674_new	7	12	11	19	12	8	10	14	12	2
CTGACCTGACTGTTTG	alt_5674_new	107	146	121	122	175	89	183	84	176	91
GAGATCCATGGGCTGG	alt_5674_new	14	19	12	14	24	17	19	17	21	15
CGGGGCTATGTCCTAT	alt_5674_new	60	52	71	57	85	61	64	61	89	56
GGTCGTTTTCAGACGG	alt_5674_new	0	0	0	0	0	0	0	0	0	0
GCAGGGACTTCCATTG	alt_5674_new	3	10	8	6	5	6	6	10	6	5
GCTGTTGCCCGCACAT	alt_5674_new	27	24	35	34	37	31	32	26	33	29
GGAATGTCATCTTCAC	alt_5674_new	0	0	0	0	0	0	0	0	0	0
GACAAGAACTGTACAG	alt_5674_new	33	32	26	29	28	37	38	33	26	29
TCGTTCCCCGGACTGT	alt_5674_new	0	0	0	0	0	0	0	0	0	0
ATACTCGCTGTTAGTC	alt_5674_new	10	14	16	5	13	16	10	7	7	9
TTTAACATAGAGGCCG	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TGATATGTTTCGCAAC	alt_5674_new	76	55	79	61	86	55	88	69	99	62
TCCAATCATTTAGCAA	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TGTCCCTAATCCTCTC	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TCTATGTCACGTTCAT	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TAGAACAGAATGGGGC	alt_5674_new	10	14	25	18	14	15	22	19	28	25
CAAACTCGTCAAGGAT	alt_5674_new	0	0	2	3	0	1	0	0	0	0
AATACAACTGCATCTT	alt_5674_new	19	22	15	15	16	20	26	11	28	18
TTTTACGTATGTCTCT	alt_5674_new	24	10	21	20	19	11	26	10	13	12
CCCTAAGGGCTAATTC	alt_5674_new	22	27	24	25	22	26	22	15	32	28
GAGGGGTTTCATAGTA	alt_5674_new	43	36	46	40	48	31	45	39	47	31
GACTTTTCTTGAGATT	alt_5674_new	26	36	24	18	20	17	24	25	30	22
TATGACCTACACTACC	alt_5674_new	116	234	146	139	253	93	267	116	247	100
GCACAAGTAATGGTTT	alt_5674_new	48	61	58	54	50	35	68	49	57	55
GGGTAATTTTACGTGG	alt_5674_new	44	46	54	34	30	35	32	22	34	39
CAATATAGTGGACCGT	alt_5674_new	0	0	0	0	0	0	0	0	0	0
CTTAGTTAACTCACAT	alt_5674_new	80	116	116	99	98	76	108	71	116	81
TCCTTTAGAGGGGGAT	alt_5674_new	6	3	6	10	8	2	7	10	1	5
CAGCCACTACATGGCT	alt_5674_new	13	23	20	21	13	24	19	13	26	9
TGCTCTTCCGGAGGCA	alt_5674_new	75	73	110	74	68	79	74	51	62	74
AGCGGAGGCTATTTCG	alt_5674_new	4	14	15	17	13	12	19	8	20	11
ATCGTCAGCAGTTTCA	alt_5674_new	0	0	0	0	0	0	0	0	0	0
ACGTATTCCCCGGCTT	alt_5674_new	13	23	15	22	26	20	25	20	25	13
TTTGTTTTTATCGGGC	alt_5674_new	32	30	33	13	35	15	40	18	38	23
CCCCAAAGTCAAATTC	alt_5674_new	0	0	0	0	0	0	0	0	0	0
CGTTTTGGCGTTTCTT	alt_5674_new	18	22	23	17	14	18	16	20	24	6
TTCATCAATATAATTC	alt_5674_new	28	41	56	44	44	44	52	26	35	34
GATGATCTTTTTGGCT	alt_5674_new	0	0	0	0	0	0	0	0	0	0
GGTGTATCAGCCTTCC	alt_5674_new	28	36	23	37	31	29	37	23	31	30
CGTTGGAAAGTTCGCA	alt_5674_new	42	58	57	62	61	34	56	40	44	51
CCGTCACCAGCTGTGC	alt_5674_new	13	26	18	21	30	13	28	15	39	12
TCATTTGATAAGCCAA	alt_5674_new	0	0	0	0	0	0	0	0	0	0
TTCCAGTTCGATACTG	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
ATGGATCAAGATATTG	alt_5209_reverse	1	1	4	3	2	3	3	2	4	2
GTGACTTAATCATCTT	alt_5209_reverse	81	110	102	97	109	96	95	89	101	65
CTGCAGAGGGATAACA	alt_5209_reverse	148	201	190	115	209	166	215	161	223	130
TTAGTACCCGGAGTAC	alt_5209_reverse	0	0	0	0	0	2	2	0	3	0
GGCAAGCGTCCTAGTT	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
GCCTAACATGATCTAT	alt_5209_reverse	128	176	189	164	193	120	169	113	192	133
CTAGTTCGAAGCCACC	alt_5209_reverse	8	14	15	12	21	13	13	6	16	13
ATCAATACTGTGTATC	alt_5209_reverse	20	37	37	29	41	29	26	27	37	23
ACGACCACCGAGGCCC	alt_5209_reverse	3	12	8	26	11	21	19	12	16	19
TATACACCCTGCTAGG	alt_5209_reverse	24	14	21	13	26	12	38	19	31	14
ATATGGGTTACGTCCT	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCTGGCCGTGGTG	alt_5209_reverse	44	257	50	59	281	36	310	39	301	34
GCACTACGAGCCTCTC	alt_5209_reverse	17	45	29	25	35	25	31	23	42	11
GTACTCGTCGCATTAT	alt_5209_reverse	23	28	17	20	35	19	28	22	37	15
GACTTCTCCCACGAAT	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTTTCGGTCCTGT	alt_5209_reverse	6	3	5	6	3	0	9	3	7	9
TTTTACGGCTGTTTCC	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
GGCTATTCAGTTGGTT	alt_5209_reverse	59	99	66	70	99	63	103	48	107	52
ACGCGCCATCAAGGTT	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TAACATACACTGCCGC	alt_5209_reverse	12	30	14	14	33	18	28	9	45	14
GGCTTCCTCAGTTCGC	alt_5209_reverse	22	45	25	26	41	40	34	22	38	27
CGTCCTTACATCAGAT	alt_5209_reverse	57	74	72	62	66	53	76	57	79	60
CGGTACAATTCATTAT	alt_5209_reverse	18	10	19	12	18	12	17	17	22	17
TTAAACCAATTTATGG	alt_5209_reverse	75	53	72	78	102	51	76	41	78	61
TACCTCTGGATCCTCA	alt_5209_reverse	4	5	6	2	4	1	2	1	7	2
TGGTTTCCAGGTTCAC	alt_5209_reverse	12	23	23	16	35	20	36	11	36	14
AGATCGTAAAACCACG	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TGAAGGCTCTAGATCG	alt_5209_reverse	20	17	25	18	25	17	30	15	27	13
CTAGATAATTTATGTT	alt_5209_reverse	14	30	14	14	37	13	27	20	30	15
GATTGTCTTCTCTTCT	alt_5209_reverse	34	52	62	41	42	34	46	49	44	49
GAGGGTAGCTCAATAG	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
GCAATTGCTGAGTTTG	alt_5209_reverse	19	17	21	10	25	8	15	14	23	10
TTCACACCGTTCCACA	alt_5209_reverse	15	15	9	9	29	10	37	15	24	17
TCCCGGAGACTCAAGC	alt_5209_reverse	14	32	27	14	32	20	39	13	36	14
GCATTTTATACTTTCG	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAACGTAATAAGC	alt_5209_reverse	19	16	14	11	26	13	29	11	34	11
CGTGCTATTGAGTGGC	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTCGACACCGTCC	alt_5209_reverse	57	69	59	43	68	44	92	45	57	54
GGTTAGAACTCTCAGT	alt_5209_reverse	73	149	98	67	141	55	180	77	144	60
TAATATGCGGAAAGCG	alt_5209_reverse	105	128	112	84	115	102	118	80	138	78
ACATCAGTACAGCGGC	alt_5209_reverse	0	4	7	0	8	2	4	3	6	3
AGGATTTCAGATGCGT	alt_5209_reverse	9	5	11	14	9	5	10	16	14	6
GGCGATTAGGGGCAGT	alt_5209_reverse	21	11	18	16	37	20	22	18	30	13
GGTAGTTGCTGCCATT	alt_5209_reverse	26	46	40	48	52	34	41	28	54	28
AAGTCTGACTCGTCTG	alt_5209_reverse	87	97	82	84	108	66	111	85	144	53
CGCTCTACACAGCTAC	alt_5209_reverse	27	34	26	34	61	36	61	32	59	35
CAGTTTCGGGTGTATT	alt_5209_reverse	20	19	32	13	30	15	23	18	41	17
TTAAGATTCCCCATAA	alt_5209_reverse	33	41	32	41	26	31	42	35	42	32
TGTTTAGTCACATCAA	alt_5209_reverse	21	17	21	15	17	13	27	11	17	11
TCAGTGGCTATAATTA	alt_5209_reverse	72	101	61	69	86	80	103	65	108	63
CTATACGTCGTTTTTT	alt_5209_reverse	18	50	22	34	56	23	51	21	39	24
GGCTATGAGACTGGGC	alt_5209_reverse	215	310	258	260	297	199	331	208	330	197
ACGGCATCACAGTTAC	alt_5209_reverse	65	59	59	41	57	42	62	48	61	49
TGCTGTTTAGATTGCT	alt_5209_reverse	129	98	122	112	118	95	107	89	121	109
ACTAACAGGGTCGTGA	alt_5209_reverse	24	35	22	34	45	22	37	21	32	25
ACAAGTTTTGGCCATT	alt_5209_reverse	6	20	15	9	14	9	18	8	16	4
ACTCTTTAGCACATTG	alt_5209_reverse	28	53	31	22	58	33	55	41	53	45
TTGGACGTTAAAGATG	alt_5209_reverse	16	22	24	20	18	23	26	16	36	15
CTTAAGCTCGGGTTGG	alt_5209_reverse	5	9	5	6	8	6	9	1	9	4
CGGCCAATTATCCCCA	alt_5209_reverse	26	65	36	26	56	31	74	27	58	31
CGGATGAACTGTTTTC	alt_5209_reverse	28	61	38	30	45	35	37	34	55	27
AGACCAACGAAGCTCT	alt_5209_reverse	39	49	38	43	49	50	55	35	69	45
TCGAACCTCGCTGCTC	alt_5209_reverse	210	250	255	204	286	204	269	165	313	180
TCTCAGCCAATCGTCA	alt_5209_reverse	31	64	41	25	51	27	50	28	82	27
AAGCTTGCTCTTGTTT	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TTAATAACAACCCGAT	alt_5209_reverse	33	36	40	32	45	30	50	37	38	33
CGCCAGGATCATGACG	alt_5209_reverse	86	64	80	86	82	78	105	58	84	59
CTGGATAGCTCTCATC	alt_5209_reverse	53	101	87	61	82	55	94	58	86	73
ACTATCTTTTGCCTAC	alt_5209_reverse	33	32	43	25	38	32	47	32	31	27
AAGAACCTAATATCGT	alt_5209_reverse	228	336	288	236	312	208	348	212	305	223
CCTCTGCGTGACCAGG	alt_5209_reverse	8	27	16	5	10	11	19	5	19	13
TAGTCGGGCTTTCAAA	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TGATTCATCTCGCCTT	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
AAGAACGCTTCATTTT	alt_5209_reverse	13	11	7	7	11	5	11	9	13	9
GACCGACAAGCGTTAT	alt_5209_reverse	12	17	13	15	17	13	17	10	20	6
TTACTTCGCAGCTTTA	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTTTAGTTTGGGA	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTACGACAATACG	alt_5209_reverse	15	28	27	19	17	15	16	16	24	11
ACGACCAACCTCTAGT	alt_5209_reverse	62	97	65	85	111	64	101	55	112	63
CGCTCTGCGGAATCGG	alt_5209_reverse	71	161	103	102	131	63	148	81	137	81
TTGTCTGACGGATATA	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TAGACTGTCATGTACC	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTCAAACCACCTG	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
TGACGATACTCGGCAA	alt_5209_reverse	5	1	1	0	2	1	2	5	1	0
CTAGGTTACAAGAACG	alt_5209_reverse	0	0	0	0	0	0	0	0	0	0
AGACTATTCTTTGAGT	alt_5209_reverse	39	49	47	34	39	43	52	46	48	34
GGGTGCAGAATTCAAA	alt_5209_reverse	19	29	22	19	16	26	26	21	27	14
TCTCGCGTGCGGCGCT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGCCAGAAATGTC	ref_2605_fdr	15	21	33	27	18	24	23	28	19	30
GCACAGGTGTGCTGGT	ref_2605_fdr	333	175	437	333	202	306	219	350	189	288
TCTCCATGAGGGATCT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTGGATATGCTCCTGT	ref_2605_fdr	100	42	92	85	57	88	46	95	51	70
CGGTCACCATACGGGA	ref_2605_fdr	26	21	28	19	11	30	9	25	21	28
CGGCTCTGCCGAATGT	ref_2605_fdr	68	32	71	80	41	62	45	50	36	58
TCCATTCTGCTTAGTG	ref_2605_fdr	5	0	7	4	2	6	6	4	4	3
TGCTAAGATACGGGCC	ref_2605_fdr	161	99	198	201	86	158	81	179	97	158
GGTCCGGTGCGCTCTA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTTTACTGAGAAA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTAGTTCACCAAA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTAGTTTGTCTCT	ref_2605_fdr	95	60	117	96	56	102	56	102	49	97
AGGGTCTTGAAAAGGG	ref_2605_fdr	51	12	47	37	12	37	14	37	17	41
ATCATTGCATAGCCAT	ref_2605_fdr	52	32	51	56	44	49	38	69	34	58
ACTATCTGGTAGCCGG	ref_2605_fdr	16	13	19	18	5	24	10	18	14	17
AGCCGGTTAGGCTAAG	ref_2605_fdr	131	84	186	182	82	131	63	134	70	105
TTCCTCTGTGCTGCCG	ref_2605_fdr	4	0	4	4	1	3	4	4	2	5
TTTCTCATCTATCGGA	ref_2605_fdr	194	75	222	161	72	168	82	159	99	128
GGAAGTTAGTCCAGCG	ref_2605_fdr	123	63	137	133	64	118	60	121	65	93
CTAGACAAGCATGGGT	ref_2605_fdr	21	13	26	27	27	23	25	20	26	14
CCGCCTCGTGGTTTGC	ref_2605_fdr	15	52	25	31	59	19	61	20	68	15
TCTCCCAGTTAATGAG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGATTGGACCGAC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCACGGTACAGCGTCC	ref_2605_fdr	11	3	15	8	3	16	2	11	4	7
GCGCTGAATTCAAGAA	ref_2605_fdr	99	47	145	84	54	129	53	103	62	80
CTTAATTTTGGGCGGC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCGGTTCGAGTTGCTA	ref_2605_fdr	305	174	422	341	178	310	187	314	184	270
AAAGCGTGCAAATTGG	ref_2605_fdr	22	27	31	24	18	26	18	25	14	24
AGTGCGCTGCTCTGTA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCAGTCTCAATAA	ref_2605_fdr	207	115	270	210	141	210	110	220	150	176
CCAAGGTGTCCGACAG	ref_2605_fdr	12	8	18	21	15	11	12	13	7	11
TCTTGTCTGTGCCTGC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CCAATATGTGTCCGTC	ref_2605_fdr	44	27	50	46	25	43	23	45	20	29
GTCACCCATAGAAGCA	ref_2605_fdr	199	136	270	250	98	242	115	230	135	236
TTCACCTTAATTATTT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TATCTCACCCCGGCGA	ref_2605_fdr	8	14	20	20	14	25	16	16	15	14
ATGCATCTAGTCTCGC	ref_2605_fdr	3	3	7	6	2	2	2	8	3	4
GGCCTACACTGAAAAT	ref_2605_fdr	204	137	267	225	123	210	118	215	118	188
GTCTATCATTCTTATT	ref_2605_fdr	328	134	326	296	154	277	145	286	178	290
GTACCTTGGGGTCCGT	ref_2605_fdr	47	33	60	50	30	59	22	47	31	40
ATCTCAACGCGCGGAC	ref_2605_fdr	54	28	67	47	33	41	27	42	41	38
GCTAGTCTTAACTGGT	ref_2605_fdr	58	22	64	73	20	54	43	74	44	50
TGCAGCGACTAAACCG	ref_2605_fdr	31	21	40	33	17	39	19	30	32	28
ACTGCTATTCTTGTTA	ref_2605_fdr	236	129	331	268	115	234	130	249	117	235
TCTCGGAACCTGAAGA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGAGTACTATTTT	ref_2605_fdr	34	17	39	34	11	31	19	28	22	36
GAGTATGAATCATTGT	ref_2605_fdr	78	33	92	84	51	92	32	86	42	73
ACGGCCTGTTATGAGT	ref_2605_fdr	28	19	47	51	23	47	21	34	17	31
TTCCTTCAGCATGTCT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
AGATTCTCTCAAGACC	ref_2605_fdr	86	52	118	112	56	101	44	72	51	76
AGTTATGGTTCAAGGT	ref_2605_fdr	99	45	114	81	47	85	49	84	45	67
GATATACTTTTATTGT	ref_2605_fdr	344	160	457	403	185	363	206	343	171	311
TTGGCCTGAACTCAGG	ref_2605_fdr	93	70	145	110	47	106	49	91	55	91
TGTCAGAACCAGTCCG	ref_2605_fdr	58	32	81	64	32	53	42	46	32	54
CCTGTACGATGACTCT	ref_2605_fdr	297	218	366	351	246	298	240	294	226	286
GCTTACTACGGTCACG	ref_2605_fdr	490	220	605	544	229	432	249	434	261	433
TTGGTTTTCACTTCCG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGTATCCTCTAG	ref_2605_fdr	361	191	522	418	213	377	222	407	221	331
TCCTTCGCTTGAGGCG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TTACCTACTTCGATTG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTCGCGATGGTCC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TACATTTTCTCTAAAC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGACCTTGATCGG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GCGCAGCGGCTGAAAT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGATGATTGCGAG	ref_2605_fdr	138	64	167	134	95	138	78	131	79	119
TTTAATTCCATCTGGA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTCTCCTCGTGCT	ref_2605_fdr	70	46	64	48	55	62	52	60	41	54
AGCCCTCAGCCCGGGT	ref_2605_fdr	55	36	67	67	31	54	41	60	33	48
TCTATCACGGTTGGAG	ref_2605_fdr	124	70	166	182	96	124	71	135	73	130
CAGCACTCTGTTTACC	ref_2605_fdr	7	4	7	10	11	2	9	9	7	2
ATCTCTTGAACATACG	ref_2605_fdr	105	58	135	105	54	94	69	91	56	76
TTTTGGGCTACAAGCA	ref_2605_fdr	69	43	80	80	37	59	32	62	35	64
GTGCACTCGCACTTAT	ref_2605_fdr	33	16	49	39	16	45	36	41	15	40
TCGGTGGGATATTATG	ref_2605_fdr	9	1	7	7	5	5	3	8	3	2
CATTTACTGCGTCAGG	ref_2605_fdr	94	52	134	112	52	94	68	99	68	105
TTAGAACGGGTAGTGC	ref_2605_fdr	111	69	169	126	61	107	88	132	83	105
CAAGGAAAGTCATCTG	ref_2605_fdr	17	23	21	23	11	24	21	12	18	18
AGTAGCCTAGTAGAGT	ref_2605_fdr	74	34	76	43	34	56	35	43	35	57
TTTGATTAGCTAAGTG	ref_2605_fdr	5	12	21	16	11	7	9	9	10	9
CGCGCTTTATCGCATT	ref_2605_fdr	41	30	50	55	32	46	27	32	36	45
CGAGAGTCTTTCACAA	ref_2605_fdr	12	10	26	16	9	14	5	25	12	17
ATGTTCTATAGGCTCA	ref_2605_fdr	618	319	810	678	354	661	359	615	373	589
ACTGTTTCAAATATAG	ref_2605_fdr	73	22	48	64	38	46	27	47	25	55
GCGCATTTGCGGTACG	ref_2605_fdr	162	98	198	152	96	149	103	172	108	133
CACTCGATGCATCAGT	ref_2605_fdr	21	9	28	14	11	10	17	14	13	18
GAGCTATCCATCAGGA	ref_2605_fdr	78	37	88	73	34	72	43	73	35	61
TTTCCGACCAACGACG	ref_2605_fdr	9	12	15	7	5	16	15	11	11	11
CGGCAACATGTGCGCG	ref_2605_fdr	296	154	326	334	139	276	164	286	154	258
ACTTCGTATTAGACCG	ref_2605_fdr	64	31	74	59	40	60	25	63	25	66
CTGGTATCGGGGCCGC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTACTTTGCATGTTAG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TTACCAACCTTTTTTT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTAACTTCACCGCTTT	ref_2605_fdr	7	4	14	8	5	7	4	13	5	12
GGTATTACCATTCTCT	ref_2605_fdr	18	21	28	27	9	20	7	17	11	23
TGACGCACTTGTAATC	ref_2605_fdr	64	26	70	53	31	65	32	43	34	36
TATCTAACGCTTAATG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GTCACTTACTGTGGTC	ref_2605_fdr	9	5	18	17	4	13	12	12	12	13
GGGACTAAACGCTATA	ref_2605_fdr	89	51	101	107	27	70	48	63	57	73
TGTTCGTTCATACATT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GGATCCGCTTTCATTG	ref_2605_fdr	391	223	456	405	181	380	216	391	220	332
ATACGTTGTTATGTTT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GACTTAGGTTCCCTTT	ref_2605_fdr	38	23	43	48	26	58	17	37	26	28
TCAGCTCCGAACTTTG	ref_2605_fdr	131	52	152	102	54	108	58	90	54	78
AGTTCAGGTCGTCCGC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCGCAGGTTTCAT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TCATGTACTCGGTCCG	ref_2605_fdr	10	6	12	4	11	10	6	6	3	10
AGTTTTTATTGAACTC	ref_2605_fdr	320	192	424	346	191	306	219	366	204	311
ACGAAGGTCCTTTACA	ref_2605_fdr	70	24	54	38	29	59	34	50	39	43
TTCGCACCTGGTATGC	ref_2605_fdr	333	249	364	360	260	322	265	320	278	304
TGCGAATAAATGCCCA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
AAATCTCAGTATTGTA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GACAGAGCGGTGCTGA	ref_2605_fdr	90	44	90	91	57	67	45	78	52	90
TTAAAGCAGCCACACG	ref_2605_fdr	113	45	112	102	51	84	74	74	60	81
CGCTTGTAGATTCAAA	ref_2605_fdr	77	28	79	76	24	70	45	59	46	80
GGCCTATGGAGGACAG	ref_2605_fdr	118	54	163	138	53	124	60	138	58	92
CTGCGTCAAGATTTCA	ref_2605_fdr	11	2	5	19	6	14	11	13	5	15
GTGGCACGTTTTGGCC	ref_2605_fdr	104	34	130	115	68	111	69	81	58	81
GATTTGAGTGCATTTG	ref_2605_fdr	60	64	85	83	48	87	63	93	54	68
TCCGTTCAGGTATCCT	ref_2605_fdr	14	7	22	22	5	20	9	15	9	6
TGAGCATTCGGCGAGG	ref_2605_fdr	49	31	68	35	18	41	16	42	30	41
ACCTGGGAAAATCCAA	ref_2605_fdr	143	65	151	137	74	134	80	132	86	111
CTGGCGTTCTAGAACA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTCCCATTGTCA	ref_2605_fdr	29	18	33	37	17	34	12	37	28	17
TACTCTGTTTCCACGG	ref_2605_fdr	26	28	42	35	19	37	17	29	17	42
GCACTATCTACACGTC	ref_2605_fdr	20	9	26	17	11	18	12	21	12	9
TCTATAGCTGCGATAA	ref_2605_fdr	49	31	66	80	21	41	41	61	27	46
CGAGAGAATAAGGTTA	ref_2605_fdr	734	345	869	797	317	692	367	767	379	619
CATGTCTGGGCCGTGG	ref_2605_fdr	155	84	140	158	90	100	76	138	114	115
CAGCCGCGAAACTGAG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGTCTACGTAGTC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCAGGTCGTTATC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CTTATCATGGCTTACC	ref_2605_fdr	17	7	30	19	10	27	17	29	7	13
ACTTACTCGTATGCTG	ref_2605_fdr	201	88	244	204	92	172	92	183	100	158
AAATATGCCATCAGGT	ref_2605_fdr	33	21	48	39	28	39	13	36	12	19
CCTATCCTTTTTTTGA	ref_2605_fdr	126	68	169	152	61	143	75	139	64	100
GCATCAACTCATGATT	ref_2605_fdr	28	25	35	24	14	42	8	34	20	15
TACAGGCGCACTAGGC	ref_2605_fdr	16	13	40	36	19	26	14	24	14	27
GTGGGGAGGCTTATTT	ref_2605_fdr	174	98	200	205	80	176	86	180	104	159
CAGATGATTTTTCTCA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCCACTTCGGTTG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGCTGCCTGTTTG	ref_2605_fdr	50	35	65	56	30	64	55	48	41	58
AGCTGCTATATTAGAC	ref_2605_fdr	16	8	33	38	18	33	24	23	21	20
CTTGACGTGTTTTGAG	ref_2605_fdr	38	14	37	29	8	38	20	16	12	30
AATACCTTAGTAATTC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
AATTCTCGACAGCGCT	ref_2605_fdr	50	24	68	55	39	52	33	62	36	78
GGAACGTGCTCAGTTC	ref_2605_fdr	63	49	114	80	55	81	50	80	43	86
TGCATCTACTGGTATT	ref_2605_fdr	18	5	20	13	4	17	10	10	14	15
ATGAGGTGGGAAATGT	ref_2605_fdr	78	35	100	95	41	83	61	57	44	80
TACTTATCTTAGCCAC	ref_2605_fdr	36	18	39	30	11	29	17	21	17	29
CTCTTTTGATGTATAG	ref_2605_fdr	133	98	163	144	117	127	130	133	123	129
GGGTGGATTGGTCTTC	ref_2605_fdr	19	5	19	16	13	15	13	19	12	8
GCTGTCTTCGCTACGA	ref_2605_fdr	36	10	34	41	15	40	24	28	18	34
AGGGACGTGTCCCGTT	ref_2605_fdr	13	10	21	24	13	24	9	14	15	20
GCGCTGGGTAAGTATA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTGTTCGTATCGT	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTCAATACGACCG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGTCACCTTTCCC	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
TGACGATACATGAGGG	ref_2605_fdr	43	26	59	40	29	25	18	53	28	39
TGTTGTAGCGCGAATA	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
GATTTCCGGTCTTGCC	ref_2605_fdr	280	145	375	303	185	264	146	270	189	278
ACGAGCGGATACGATG	ref_2605_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGTTCAACTACAT	ref_2605_fdr	88	64	117	76	59	65	77	100	61	65
CCTTCCGTCGGTGCTC	alt_4820_RC	21	22	26	26	43	14	29	10	36	20
ATCCCATAGTGGCTAG	alt_4820_RC	15	15	20	8	21	12	30	12	26	6
CTCTATCGTCTACTTG	alt_4820_RC	6	8	10	5	4	6	5	2	2	9
GGCCCGCCAAATGTTT	alt_4820_RC	44	72	67	65	47	48	53	51	72	47
TCGCCGGCTGTAGTCA	alt_4820_RC	68	101	88	69	88	72	112	54	125	77
GTTGTAGGTGCCTATG	alt_4820_RC	3	4	4	3	0	8	7	6	6	5
CTGCCCTTATTAGTGA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
CACTTATAGAACGTCG	alt_4820_RC	9	10	10	6	9	13	12	6	16	7
CTTCATCCATGATGGT	alt_4820_RC	135	140	153	154	150	103	185	130	153	114
AGATAGCCCAACACCG	alt_4820_RC	35	39	36	38	32	30	35	32	36	27
TGGTAAAGCATCGGCT	alt_4820_RC	20	23	33	29	30	22	29	18	32	28
GCAGCCAGCGCTCCGT	alt_4820_RC	9	12	17	7	17	12	7	9	7	12
GTGTATACCAAATATG	alt_4820_RC	3	6	9	5	6	10	9	9	8	10
ACAGGGACGTTGCGCG	alt_4820_RC	211	250	247	230	244	237	265	222	275	173
GGACGAGAGGTTGTTA	alt_4820_RC	33	28	39	31	37	17	35	17	34	19
GATTAGTTATCTAAGC	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TAACCTTTTTGTCCGC	alt_4820_RC	13	22	26	26	18	17	10	24	27	18
TGCTCAAAACTCATAA	alt_4820_RC	105	122	144	133	134	122	107	107	128	114
TATGAACAAACGTGCT	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TGAAGCTGCTAAGTAG	alt_4820_RC	3	2	13	4	8	4	7	2	7	5
ACATGCTCAACTCATT	alt_4820_RC	15	15	17	12	18	10	17	19	9	13
AAAGTTGATGCTAAGT	ref_4820_RC	123	52	144	118	50	120	53	95	63	94
ATCGCGGAAATGGCAA	alt_4820_RC	84	70	91	82	79	69	60	64	69	54
CCACCGTTTGCCTCAA	alt_4820_RC	2	19	6	2	3	2	18	2	6	2
CAGGCTGGGAACCTCA	alt_4820_RC	20	23	18	8	23	13	31	16	25	4
TCTCGTTACGACGACG	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
ACCTTTCACTATTCGG	alt_4820_RC	35	40	49	43	54	32	45	37	38	26
GGGTATTTGTGCCCAC	alt_4820_RC	46	27	40	31	35	33	39	29	37	18
TGTCCGGTCCACTCGA	alt_4820_RC	137	128	131	142	131	112	127	112	157	102
ACGTCTGATCTTTCTT	alt_4820_RC	17	13	22	15	18	13	11	9	14	18
AGCATGCGCGGTCTTG	alt_4820_RC	89	85	90	69	86	66	70	72	91	62
CTGTGTGTAATTTTAG	alt_4820_RC	14	32	24	16	28	18	20	16	26	16
GCACTGGAGTTCAGGG	alt_4820_RC	19	20	33	18	15	14	21	18	10	22
TTCTTGCGATTTCGCT	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TACAAGCCGCGCGCTG	alt_4820_RC	47	59	51	48	57	45	65	38	68	40
TCTTGAAGATTTCTAA	alt_4820_RC	5	9	7	7	3	1	7	4	3	5
CGACTCAGTCTCGGCC	alt_4820_RC	25	23	35	35	45	20	33	40	29	32
GAGAGTAATATAAAGG	alt_4820_RC	6	7	11	9	12	6	13	2	11	4
TTGTGAGCCTTATTCG	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
CCACATTGCGCACCTA	alt_4820_RC	134	163	176	150	177	137	183	166	184	121
CGTTGCATTTCGAACA	alt_4820_RC	43	52	59	38	68	36	62	42	63	46
CACCATCTCTTTGCGA	alt_4820_RC	4	35	11	12	41	10	35	7	30	6
CGCCTCGTAGTAACGG	alt_4820_RC	14	21	14	14	12	10	11	15	12	24
ATCTTGGTTCGTAAAA	alt_4820_RC	6	4	6	10	12	2	7	6	14	11
TCCGCGGTTGTTTGTC	alt_4820_RC	16	35	34	29	42	18	48	21	39	25
AATTGATGTTCGAGTC	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TACAGGGTGTGCCCTG	alt_4820_RC	6	6	11	5	4	4	12	4	13	4
TATTTCTTAGTCCTAA	alt_4820_RC	14	18	14	16	16	10	19	12	10	13
TTGTCTGCTCGGGTTC	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTCGTGTTTACC	alt_4820_RC	37	61	45	56	49	38	52	33	52	35
TTTGACATTCCTGGTA	alt_4820_RC	9	11	12	14	17	11	20	11	13	14
GGCCACATTAGCGTAG	alt_4820_RC	16	15	5	6	16	8	20	10	24	8
GGGTTGTGACTTTTAG	alt_4820_RC	24	50	39	35	40	27	50	17	51	37
CTTTCGTCGAGCTTGC	alt_4820_RC	31	25	32	32	30	24	37	34	36	33
TCCCGTTCTTCGCATA	alt_4820_RC	53	58	67	49	76	35	63	48	76	53
GCCTAGGTAGTAGAGA	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
TCTTCTAACATGGCAG	alt_4820_RC	14	10	8	13	7	5	9	9	12	14
TGGGCATATTGCTATG	alt_4820_RC	36	37	35	29	35	25	36	28	39	32
TCCCGTAGTATGGCCC	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
GGCTAATTCGATATTA	alt_4820_RC	33	31	35	39	31	23	31	23	40	21
CATGGATGTACTTTTA	alt_4820_RC	34	56	45	38	55	27	56	41	59	37
TCAGCGTACCCGGGCT	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
CAGCCGTTTTTCGTAG	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TCGGCCTTTCTTTCCG	alt_4820_RC	41	40	49	42	47	45	35	37	42	32
TTTCAACCGCTTCTGC	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
GTTGCTACCTTTACTT	alt_4820_RC	12	11	13	14	19	5	14	5	16	8
CGTTTTCTGTCATTTC	alt_4820_RC	29	41	34	39	34	33	51	23	22	29
TGCTGCCTTGACGCGT	alt_4820_RC	40	55	39	37	53	35	69	37	65	29
GTTAAATGGTGCGCAA	alt_4820_RC	79	83	78	66	109	67	92	70	106	45
CGGTCGTCGCTTGCGC	alt_4820_RC	1	12	2	0	6	1	11	2	4	4
CTTGGAACCATTTCAT	alt_4820_RC	12	18	5	11	13	9	15	13	23	3
TCATCGTTATGATCTC	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
CACATCCCATGTCCAA	alt_4820_RC	12	18	18	16	24	17	35	23	30	14
CATTACCTATACGCAT	alt_4820_RC	28	38	21	38	32	20	24	21	39	21
TCTGTGGCCATCTTCG	alt_4820_RC	25	22	34	27	18	25	19	10	36	24
TGGGGCCGGGTATGCA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TCCCGATCTGAACTCT	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
ATTACTGGCCGCCCCT	alt_4820_RC	18	27	26	15	31	19	34	14	16	15
CCTGCGCTGCATCGAT	alt_4820_RC	8	16	13	10	16	14	18	8	19	15
TAAGAATTTCACCGTA	alt_4820_RC	28	17	35	29	21	27	19	18	21	13
CAATCACATGGGTCGG	ref_4820_RC	60	34	93	94	42	83	34	77	36	88
TTTTTTACCCCTCGAC	alt_4820_RC	0	0	2	0	5	1	1	2	0	0
TTCCGGTTCTAGGGTT	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTATTAATGATT	alt_4820_RC	22	12	17	17	13	16	22	17	22	11
TAGTAACCCCTGGCAG	alt_4820_RC	17	26	19	11	22	11	26	11	32	18
CCATCCATCGATGGCT	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
AGCAGCGAACTTTATT	alt_4820_RC	11	6	11	2	6	7	7	10	15	8
CTCTCCGGCGTTGCGA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TACATAGATGGGATCA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
ATGTATGGTTTGTGGG	alt_4820_RC	23	28	23	16	21	31	24	20	31	20
TCAAACCCATCCCGGC	alt_4820_RC	103	87	110	92	122	100	100	91	119	93
CTGCCTTATTCTAAAC	alt_4820_RC	13	20	20	18	21	11	27	10	17	14
ATTGCAGTTGATATAG	alt_4820_RC	23	22	25	19	19	16	23	13	34	22
AACGTAACCATCTTTT	alt_4820_RC	25	46	46	58	43	40	57	41	56	33
GACTGCTCCTCTCAGT	alt_4820_RC	0	1	3	3	10	3	5	9	8	5
TCGCATTTACTCGGCT	alt_4820_RC	17	18	9	8	18	9	22	12	13	9
ATGCTGAGGGCTTCGG	alt_4820_RC	18	32	32	18	28	15	29	33	35	16
GCGTGATAGGGCTTCT	alt_4820_RC	16	29	15	21	29	10	25	15	22	17
GCATAGTTACTCTGGA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TGACGTAATCTCCTAG	alt_4820_RC	5	0	4	3	1	5	5	0	4	5
AGTGCTTTATCTGAGC	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
CCGTAGGGTTTGGTGA	ref_4820_RC	355	485	446	407	504	343	549	369	569	366
CGCGTCAATCTGCTGC	alt_4820_RC	22	33	26	13	21	19	17	21	31	17
TTATCTTCCAAGCCCA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TCAGGTGGATACGCTA	alt_4820_RC	2	3	2	4	5	2	1	4	4	1
TCTTTTTTTGATGGTA	alt_4820_RC	33	36	26	17	46	31	62	26	29	42
CACCTTATAGTCTGAG	ref_4820_RC	33	15	26	36	12	35	23	34	22	30
TGCCCGCTAATGTGAA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
AACAGCATGTTTCCGT	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
GGCGTTTAAAGACCTA	alt_4820_RC	10	18	13	11	17	16	15	12	25	15
GAGCTCAGCCATAACA	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
TGGATTATTTTTTATT	alt_4820_RC	24	35	53	30	31	17	38	20	34	22
AGTTCCAGTCGTGCCG	alt_4820_RC	6	11	7	9	13	4	8	8	16	4
TAATTTGGTTCCAGGC	alt_4820_RC	10	15	24	9	11	13	18	19	23	17
ATCCCGGTTGACTGTG	alt_4820_RC	0	0	0	0	0	0	0	0	0	0
GTCCGTGGGCTTTATC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TGGCCGCGGTGTAATT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGCTACGTTAGCTACG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CCTCCTGTATCTGGGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GCTCTTAATCTTGTAT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTCACTTCATTTCTTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ACTGAGTGTTCTAGAA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GGTTAGCAGTAAGGGA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ACATGGGCCAGCATAG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TATAAATTCGGCAGGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTGGGTCGGGCTAACA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ATCCTGCCTTGATCAC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AAGGTTTCATGACGAA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CACACGACGGGCGGAC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AATTGAAACCCTGTTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GGCATTGGTTAGTCGA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CAATGCAATGACACAT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CCTAAGCAGTTCATGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTTCTCCGTGCAGCTG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTAATGTGGTCGAACT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTTACTTGACAGTTC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TCCTGGTAACCTATGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CATGGGTCTCAGGATC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GACAGAACAAATCTCG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CACCGCGATTGACACC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GCTTCACGGTTGAGCA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGAGTTTGAAATATCG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GCATGGTTTATCGGTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GAAATCTGCCCATACT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ACGTGATGGGGTAAAT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AGGTTTTAGAGCCTGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TAAACCTTTCGTAAGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TAAACCCCAGGGCTGC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TCTTCGCGAGCCTCGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGCTAGTCTACGTCTC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TATGGGCCTAATTTTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GAATTCTCTTAAATGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTGTTTATCCGGACC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGATCATAGTTCATGT	ref_1373_missing	1	5	3	0	4	0	10	3	7	2
CGCGGGCATCTCACGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGGGTTATTTTGAACT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTGCGATAACGTGCT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTGTTTAAGTAT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AATTCGTGATTGTGGC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GCCATTGCTCTTAGCC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GAAACACCAGTAGTCT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTAGATTATGGCGTGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTGCCTGAGTGTACCC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AATCTTGTAAGGCTTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTCGGTCAATAAGGCC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AGGGTTCATCTCTGGC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTTGAATCGTATGAGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ATAGTTAGCTCGGCCC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGACTTGATATGTAGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTAATGGGCGTGTGGC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AAGATGCTATAGCTTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCGTAGGGTAGC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GGCCGGGGTCGTCGGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GAATTTCACAGTAATT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TAATGGTTCTTTTCTA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CAGCAGTATTGGGTAC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ATATCCCACCTTGCGA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GCTTAGGCAACCCGGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTGCCAGTGAAAATAT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTCGGGGTCTTTTTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TAAGCCATACTCGTGA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GACATCGGTCGGACAC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
AAGTATTGCCGTATTA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ACGTGATGGGTAAATG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTCAAGGCCACGGTGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GGTTGTCACCTTTTAG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TGATTACCTGTTGCTG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTGTCCCTAAACACTA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTGGCCATTTAGGGA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TGTTCTACTGGATGGA	ref_1373_missing	1	1	2	2	8	0	6	2	9	1
TCTTACCAGAGCCTGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTCCCGTAAGTTCGTC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTGCTTCGAGTTACCG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ACCTGATATGCGGGAT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ATAAGATTCCGATTCA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTCTGGTTAGCGCAC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GACCTAGCTGCCACCG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ATTCTGGCGGTAGTTT	ref_1373_missing	1	0	1	0	1	2	3	0	0	2
GGTGTTTCTGCCTTCA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGGAGATTTTTGGTAA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GATTTGTCACTTAAAG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTGATCCCTCTAGAAC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTAAGTGATATTGCTA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TCGAAGGACAATAGCA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGTCCATTTATCGGTT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTTCCCCGGAACACTG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTATTTCTCAGTTCGG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTGATGCTTCACCACT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTGAGTCATTGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CATCAGTCCTTGGATC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTGTGAAAGTTTCGT	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
TTGCGTTAGGTTCCCC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CGTTGAACTATGGATG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTCTCCAGTGGAAGAA	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CAACCTTCTATTAACG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
GTCCGCTTATGTCAAC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
ATGTCCGCTGTGATGA	ref_1373_missing	35	13	26	22	12	17	9	15	1	25
ATATCGGGGACTTCCG	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTTTCGCCTGGGTAGC	ref_1373_missing	0	0	0	0	0	0	0	0	0	0
CTGTTTTGCAGCCTAT	alt_6062_new	18	93	37	28	81	26	71	25	84	34
ATTAGCTGCCTTCCAA	alt_6062_new	7	16	14	5	17	4	21	8	21	6
ATTTGCCCCTTCGTTC	alt_6062_new	4	6	7	10	11	10	13	9	15	4
CAATAGGGTTATTACG	alt_6062_new	14	48	30	15	43	26	46	24	48	22
AAGCTTAAATTGGCTC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
CGTACGTCCTCTATTG	alt_6062_new	25	108	48	38	118	27	94	43	113	31
TCACTTGGTGCTTCAG	alt_6062_new	54	112	76	61	125	47	123	56	132	43
TTGGAGACGAGATGTG	alt_6062_new	53	116	67	48	104	48	95	53	111	48
TCCATATTCGGAATTC	alt_6062_new	2	6	1	2	10	3	10	1	12	2
GCTGTATTCGGGGTCA	alt_6062_new	44	113	71	50	138	51	125	61	141	44
GGGGGCCTGCTCTACC	alt_6062_new	2	23	8	6	19	1	8	4	7	3
TATTAGATCGCCCGCA	alt_6062_new	20	52	23	30	62	22	61	22	57	30
CCCACTCAGAGGTCAC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
TAGTCCCGTCTAGAAC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
GCCGTCTCCCGGTGGC	alt_6062_new	21	73	23	20	57	18	58	16	80	16
GTCCTCGGTTTCTGCA	alt_6062_new	0	0	0	0	0	0	0	0	0	0
GAAACTGCTTTACATG	alt_6062_new	33	88	39	37	74	32	81	49	104	31
GCGGTTGTTTTTCCTA	alt_6062_new	22	30	13	18	35	17	36	19	31	11
GTTTCGGAATGTGCAC	alt_6062_new	12	14	12	8	16	16	14	5	17	5
ACCTTAGGTCTGGTAT	alt_6062_new	18	40	20	15	37	14	58	10	59	10
ATGGAGGCTCTATTGT	alt_6062_new	0	0	0	0	0	0	0	0	0	0
TATTCTTGAGGAGTTA	alt_6062_new	30	64	44	36	80	36	77	34	79	31
TTGCTGTGTCTCCATC	alt_6062_new	25	68	33	30	51	20	62	18	77	26
AAAGGGTGATAGGCCC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
CTCTGATCCCAACGAT	alt_6062_new	7	11	13	8	14	3	12	8	20	5
TTCTCTTCATTTGCAA	alt_6062_new	19	19	12	13	30	12	38	9	37	9
CCGATATTAGGAGGAT	alt_6062_new	23	45	26	10	52	11	74	9	49	20
TCTCTAGTTTTGAGGT	ref_6062_new	64	124	72	70	143	51	173	67	133	71
TTGGGTGCCTCATGAT	alt_6062_new	34	96	32	46	96	33	90	29	80	27
GGCCACATGAGGTTGG	alt_6062_new	34	35	26	19	37	30	53	14	49	25
ACATAGTCTTCACTTC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
ATGTCCTTATTACTTG	alt_6062_new	2	9	3	3	13	4	13	5	8	1
CTTAGCTCTACTTCTT	alt_6062_new	15	50	20	22	48	27	30	17	47	18
CTCAACACTTGGGCAC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
GCGAGTATCAGGGTGA	alt_6062_new	10	21	8	6	23	9	31	12	25	13
GACCTGAACAAATGCT	alt_6062_new	29	63	28	22	72	31	53	29	56	27
GTTCTGCGTATCCTGC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
GGTTACGGCCCTGCAC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
GTAGCTGTATTATGTT	alt_6062_new	0	0	0	0	0	0	0	0	0	0
TTATTGTTAGGATAGG	alt_6062_new	21	36	23	18	28	19	33	14	24	7
CCCGATTAGTATTTCT	alt_6062_new	0	0	0	0	0	0	0	0	0	0
GACTCCCCCTTAAAGC	alt_6062_new	7	24	12	9	32	6	36	2	28	11
TTTTACTCGTTAGTTC	alt_6062_new	10	27	9	10	46	14	31	16	38	14
GTTATAATTCAGATTG	alt_6062_new	53	99	66	48	108	48	160	44	134	51
CATTTCGCCTTTCGGA	alt_6062_new	40	79	31	37	75	34	83	26	86	25
CCTTGTATGTACAGAC	alt_6062_new	25	80	38	39	77	26	82	18	79	31
GACTTGGTGTTAAAGC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
CCTAAACGCTGATGCA	alt_6062_new	22	54	28	18	49	25	59	17	82	20
CACACTATGTGCAGCT	alt_6062_new	17	45	45	27	61	16	65	30	67	22
AAATAAAGTGTAGGTT	alt_6062_new	69	179	82	86	157	83	177	82	199	68
GCAGCGTACGATGCTT	alt_6062_new	17	30	25	24	57	16	50	13	36	19
TCACGCATGAGTCGTA	alt_6062_new	3	7	6	3	9	9	12	0	15	5
GCAATCAAGGGTATGG	alt_6062_new	32	70	44	38	101	42	70	31	82	30
TCATTAAAGAAACAGC	alt_6062_new	15	27	18	17	16	9	18	16	28	17
TTATGCGAGTCAATCT	alt_6062_new	5	12	8	9	12	4	16	0	18	3
ATGGCTACGTGACAAA	alt_6062_new	6	11	16	10	13	4	8	7	17	3
GCTGTTAACGTCTTAA	alt_6062_new	14	53	23	35	69	20	64	16	62	17
TACCTTATCCCTCGTC	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TCTGGAGTGGTCCTGC	alt_6062_new	0	0	0	0	0	0	0	0	0	0
CGGCGCGGCACTTGTA	alt_6062_new	31	45	30	33	47	34	53	31	58	28
CCTAGAAATTACGCCC	alt_6062_new	10	17	22	19	28	11	28	7	21	6
TCGGGTATAATTGTGA	alt_6062_new	2	1	1	0	3	0	2	2	9	0
TCGGAACTTTTAATTT	alt_6062_new	0	0	0	0	0	0	0	0	0	0
CCGGCTCTAAATTGGC	alt_6062_new	36	54	54	33	49	28	64	26	59	41
GCCGAGGGGGTTCTAA	alt_6062_new	18	21	6	9	32	11	22	7	21	9
TGGTAGTGTCCAGATT	alt_6062_new	33	112	44	26	88	26	107	20	96	35
TACGTTTTCTTGCGGC	alt_6062_new	20	51	28	22	72	29	48	25	51	19
GGTCTTGGAGTTCTTG	alt_6062_new	8	9	2	4	9	4	8	3	4	2
CCACACTCGGTTCTGA	alt_6062_new	65	142	57	69	124	39	141	56	164	41
TATTTTTTTTACTTTT	alt_6062_new	24	60	40	32	50	22	47	34	66	20
GTTTAGCCATCTGGAC	alt_5240_fdr	31	15	49	28	15	14	34	15	25	28
GCGCTTTTGACGTATC	alt_5240_fdr	26	28	16	21	30	38	29	12	21	29
CGAGAATCCATTCTGA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGTCTTACCCGC	alt_5240_fdr	2	2	6	4	9	4	5	1	12	1
ATTCCAGTTTGACCAT	alt_5240_fdr	39	26	31	49	38	21	40	30	26	23
TACTCCGACCACTTCG	alt_5240_fdr	18	29	34	35	16	22	23	14	18	12
TTAGTTTTCCTTTTGA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GGCCACCTTTGTGGAC	alt_5240_fdr	27	40	42	35	37	36	50	42	60	39
GTCCTGAGGACTCTTA	alt_5240_fdr	32	48	53	36	47	25	53	38	41	34
TGGTTAACTGAGACTG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTGGGTACTGCA	alt_5240_fdr	65	66	75	77	59	74	92	70	69	69
TTTCTACAGCGAATGG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATGAAAAGTAACTTAG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGCGTGCCTGTAC	alt_5240_fdr	22	17	16	16	16	14	14	16	20	19
TATTATCCTCCAAGCC	alt_5240_fdr	1	0	0	1	0	1	0	0	0	0
GCAGATTGACGTCTCC	alt_5240_fdr	9	3	7	8	7	8	4	4	5	4
GTTTCTCTGCAGGGGT	alt_5240_fdr	11	5	13	7	8	6	6	10	11	7
TCGTCGGATATTTATC	alt_5240_fdr	3	4	2	4	3	6	3	1	0	0
CAACCTGTAGGCTGGT	alt_5240_fdr	38	45	48	37	35	33	28	38	35	30
TCTTTTAGGGTTTGCT	alt_5240_fdr	50	55	71	59	71	55	38	51	71	43
CAATCCCTCCCTAAGC	alt_5240_fdr	29	25	22	24	28	32	30	20	28	17
CCGTAGCTCATAGTGT	alt_5240_fdr	96	89	80	78	102	69	86	89	94	62
ACGCGGTTCGAGCTCA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GGATCGCCGTCCTAAG	alt_5240_fdr	4	3	1	6	5	6	7	11	5	4
CGGATACACACCGTCG	alt_5240_fdr	17	27	22	20	19	26	19	13	23	23
TCCGCTTGCTCTGGTT	alt_5240_fdr	104	130	156	142	128	97	121	129	141	92
GACTTTTTAGGTGCGG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTGGCGTGGGCTC	alt_5240_fdr	50	57	72	52	44	45	53	47	58	44
TGACAAAGAGGTTAGA	alt_5240_fdr	103	83	130	145	94	89	85	84	95	101
ACGCGCCGTCATCTGC	alt_5240_fdr	5	5	25	12	7	8	9	10	9	14
TGTGACAGAGGTCAAA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTACATGCGCACT	alt_5240_fdr	15	15	20	20	23	22	24	20	28	20
ATTCGATCTCACACCA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTGCAATGTTATATTA	alt_5240_fdr	11	4	4	11	16	6	12	4	6	1
GTGTTTATCTTATTTC	alt_5240_fdr	32	31	52	54	29	35	35	44	53	32
GTAGAGGTTCACTCTG	alt_5240_fdr	2	3	3	4	6	2	4	1	2	6
TATTTCGTAGCATGGC	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTGATGTGTTGCG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
AAAAATGGCCCGAAGT	alt_5240_fdr	21	18	24	26	16	17	21	30	17	10
TAACGACACCTTGGTA	alt_5240_fdr	32	24	46	30	22	33	28	35	14	22
AGCTGGGGTAGATCTC	alt_5240_fdr	35	42	55	46	58	53	41	48	35	39
GGCATAGGGCCCTGCG	alt_5240_fdr	18	6	18	12	11	12	15	8	10	9
AAGTGTCTAGTACATA	alt_5240_fdr	36	32	40	41	26	33	49	34	45	39
CAGAATCAAACCAAGT	alt_5240_fdr	8	5	12	10	7	9	17	9	15	14
CCGACTCCCCGTCGAA	alt_5240_fdr	2	25	0	1	37	4	39	1	47	2
AGGGATATTTGTTTTA	alt_5240_fdr	9	13	7	5	12	11	10	10	9	13
CGTCCCCACCTACGCG	alt_5240_fdr	77	92	123	81	78	79	101	71	115	82
AATAAGGTCCTCAAAC	alt_5240_fdr	50	42	32	37	51	37	44	32	47	38
GCTTGAATGCCTCGCC	alt_5240_fdr	51	46	73	45	40	56	51	56	69	44
GTGTCGTTACCTGTCG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGTCAATGTCCTT	alt_5240_fdr	14	12	11	11	8	5	8	9	10	12
TCCATATTAGATTGTT	alt_5240_fdr	35	31	62	40	30	40	36	28	39	40
GGTATGCGAATTTTGG	alt_5240_fdr	78	74	101	84	83	96	90	72	76	72
GAGTAAATACGAAGCA	alt_5240_fdr	24	15	33	15	19	19	17	16	25	13
TGACGTTCGCGTAATA	alt_5240_fdr	2	5	2	2	4	5	6	3	1	2
CTACACTCGAGCCTCC	alt_5240_fdr	3	14	15	11	8	6	11	8	13	4
ATCGAGATTGAGCGCC	alt_5240_fdr	30	32	32	25	30	28	38	36	29	27
GTATTTTATTGCCATG	alt_5240_fdr	14	21	29	18	33	19	18	23	24	20
ACGTAATCGCCTGTTG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TCCCAATGCATATTCC	alt_5240_fdr	79	74	46	61	72	54	51	39	60	60
ACGGATACTGCTCGCT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTATTTGACTGGTAAT	alt_5240_fdr	22	22	21	28	19	22	20	11	21	22
CATGAACATTTTTAGG	alt_5240_fdr	21	21	29	21	26	21	30	20	22	12
GGTGTTCGTCTAATTG	alt_5240_fdr	43	38	56	41	43	48	46	34	67	32
TATTTATGTCCTCCGC	alt_5240_fdr	32	29	36	36	34	36	33	35	19	22
CACGGTTGTGCCGTGG	alt_5240_fdr	40	33	57	56	38	47	44	51	44	53
AACGTCCTCCGATGAA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCGGCTCGTGGAG	alt_5240_fdr	0	0	1	0	1	0	1	1	0	0
TAGAATCGATATATTG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
AATTGCGTCAGGTAAT	alt_5240_fdr	177	153	194	171	151	177	177	151	172	193
TATACACCACTGCGAG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
CCTGATTGTTTGTTTA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTTATCTATTTCGGCA	alt_5240_fdr	76	68	84	72	75	92	80	59	62	52
TTGCGTCTGCAGGTTG	alt_5240_fdr	40	51	43	46	48	55	45	37	48	40
CTTCCGTACAACTTGT	alt_5240_fdr	111	66	122	90	66	93	90	100	99	99
TATGTCTCTACCAAGG	alt_5240_fdr	20	20	26	25	25	22	20	30	22	18
AGCATGTGCTTTATCA	alt_5240_fdr	5	5	7	16	10	8	9	8	8	12
GTGCGCTTTTGCACTG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATACCTACGCGGCTTA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TAACGGTGGGGGTGCT	alt_5240_fdr	44	23	40	32	21	37	34	32	23	33
CCTCCTCTCATCGGTA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGGGTCACACCAG	alt_5240_fdr	14	9	14	7	5	4	11	8	4	9
GGCAACATCATCCGTT	alt_5240_fdr	27	29	25	24	18	19	15	15	20	18
GCATGCCCCACTGCTG	alt_5240_fdr	53	51	62	68	60	65	52	46	42	58
TTCTGCTAGGTAGTGC	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATTGGCTTACGCCAAC	alt_5240_fdr	37	36	61	46	30	33	47	54	26	44
TAAGGTAGTTGTAATT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
AATTAACGCCCTGGAA	alt_5240_fdr	2	1	0	3	3	1	3	9	1	5
TTGCGTGAATCGCTCT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGTAGATATTATACCA	alt_5240_fdr	17	16	23	18	23	17	27	14	20	17
GACTCTCCGAGAAATC	alt_5240_fdr	28	25	23	22	25	15	27	24	32	19
TAACCCTTACACAGGC	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTACCGCCCAGCT	alt_5240_fdr	7	0	6	2	0	7	1	2	1	5
ATAGTCTGACCTCAAA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TATATCTTTATAAACT	alt_5240_fdr	44	34	54	38	28	29	34	41	38	34
TACCTTTTGCGTGATA	alt_5240_fdr	84	66	85	71	85	61	67	45	68	56
AAGCTAAATCGATCTG	alt_5240_fdr	43	25	36	31	23	31	36	30	34	31
ATTGTAGGACCATGGA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTCTGCCTTTGG	alt_5240_fdr	14	27	12	23	23	15	18	19	15	19
ATTCCTGCGACCTCAC	alt_5240_fdr	17	25	28	26	17	21	15	22	32	25
GGTGTATCTCCTCTTA	alt_5240_fdr	26	23	24	26	16	22	19	10	20	33
AAGATCTTATCAACCG	alt_5240_fdr	36	23	29	26	43	23	38	36	26	24
CAGAATTTGATTTTTT	alt_5240_fdr	9	10	6	12	7	7	13	3	9	6
TTGATCACCAATCCAA	alt_5240_fdr	18	29	25	29	28	21	21	20	29	21
TTACTGACGTTTCTCA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGAATCCTTGGGT	alt_5240_fdr	36	53	53	38	58	39	49	46	43	29
GTTACGAGGACTGGCA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCGTGGTCCCAGT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCGGGAAAGGTTT	alt_5240_fdr	11	26	48	34	18	22	14	11	21	14
TCGCACGATTTTGCGG	alt_5240_fdr	97	74	99	86	85	84	63	93	79	77
GAAGCGTTTGGGTCTA	alt_5240_fdr	36	29	47	51	35	37	41	41	40	30
TGCTGACTTAGCATGG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCATCATTTATTC	alt_5240_fdr	0	0	0	0	0	2	1	3	0	0
CGATCTCCTCACGTAA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TATAACTCTCGAGTCG	alt_5240_fdr	15	12	26	14	16	21	15	11	21	8
TCTGGGTAGGCATCTG	alt_5240_fdr	62	62	116	69	93	75	70	75	68	47
TTACGAGCGCGACACA	alt_5240_fdr	30	32	42	56	20	27	39	37	28	30
TGCCCACAGCTGGACT	alt_5240_fdr	3	6	4	7	4	5	4	3	6	1
GTTTGGACCGTACATG	alt_5240_fdr	6	2	7	4	5	3	1	3	2	1
GTCCTACTGTGGCAGC	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGATTACTCATCA	alt_5240_fdr	36	25	36	29	28	38	32	35	37	30
CGGGTATTCCGTCGGT	alt_5240_fdr	3	4	1	0	6	6	2	5	4	4
ATTCTCTGGGATAATG	alt_5240_fdr	13	24	17	17	11	13	21	15	18	13
CGCATCATTGAGCACC	alt_5240_fdr	43	57	40	44	37	34	44	42	52	28
GCGCCACGTACTTCAT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
CTGCACGAACCACATT	alt_5240_fdr	25	26	27	30	20	22	23	18	20	17
AAGTGCCCTACATTCG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGGGCTGTGGACT	alt_5240_fdr	100	73	115	96	97	94	95	91	110	75
TACTTCTTGCAACTTG	alt_5240_fdr	33	32	44	36	26	33	35	37	34	45
CGGACGTACACGCCTT	alt_5240_fdr	22	13	24	11	11	20	23	22	23	24
ATCCATGTAATTAGGC	alt_5240_fdr	47	37	65	37	37	44	37	41	41	35
GTAGCTTACATGGCTC	alt_5240_fdr	9	1	23	19	20	12	7	16	8	7
GCGCTTTTGAGTGATG	alt_5240_fdr	29	27	48	42	29	40	44	45	40	42
CGTACCACTTATACGT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGCACAGCAATTGTCG	alt_5240_fdr	10	20	26	14	30	16	27	14	20	11
AGTCACGGGATGTTTG	alt_5240_fdr	10	10	10	11	10	23	14	6	9	11
GATGATATAGAGGCTG	alt_5240_fdr	22	27	30	28	16	18	18	16	23	24
TTCTTTTCATATATGT	alt_5240_fdr	3	3	1	1	4	4	6	8	6	4
CTAGACTAGGATTTTC	alt_5240_fdr	15	16	16	13	17	15	23	9	26	11
GTGCGGATAAATCTCA	alt_5240_fdr	36	32	34	36	50	31	41	31	33	20
GACGTGGCATTGTACC	alt_5240_fdr	2	2	2	2	2	5	1	0	1	2
GGTACCTTTCGCAGAG	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGGATCCTTCGGC	alt_5240_fdr	91	59	131	108	78	75	46	90	52	63
TCTCGTGGGAAACTTA	alt_5240_fdr	28	14	33	18	32	34	29	32	24	38
TACTGCCTGGGTTTAT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
AGCCACCTAATCGCGA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTGTGCATTAGC	alt_5240_fdr	5	9	3	5	8	11	12	7	13	9
GTTATCCTGTTCTACT	alt_5240_fdr	63	58	84	72	66	63	72	62	68	76
TTTGCACTCACATCAC	alt_5240_fdr	30	33	27	27	21	16	15	28	22	24
TGCATTTTGTAAGACT	alt_5240_fdr	84	73	100	79	82	72	96	70	75	65
CTCGTATAACGCGACT	alt_5240_fdr	21	21	35	30	32	19	20	19	24	18
GCATAAAGCATCCATT	alt_5240_fdr	26	40	43	38	32	37	31	32	40	36
TTAGAACGGCATGATC	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
AATCCGATAGGAACGC	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGTATACTTCGGCTAT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGTTCGGTGTCAA	alt_5240_fdr	24	26	39	28	37	34	50	33	34	25
GGGGGACTTTAATTTT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGAAGGGCTTCGA	alt_5240_fdr	18	20	31	36	6	20	14	27	21	12
GTGTAGAGTTGTAGTT	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAAGGCTTCTCCC	alt_5240_fdr	17	19	11	25	19	12	19	19	17	18
GCGTCGGGCACACTCT	alt_5240_fdr	8	13	5	11	10	13	12	9	6	8
CTTTCACGAGTGAGAC	alt_5240_fdr	36	32	36	33	27	35	32	27	28	24
TTTGATTTTACTTGGT	alt_5240_fdr	15	10	14	10	12	9	10	4	10	11
TCGGAAGAAGAGGCCC	alt_5240_fdr	151	101	173	135	125	121	135	130	126	127
ATTCTACTCAGCGTTA	alt_5240_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGGTATGATGTTT	alt_5240_fdr	3	3	4	5	7	3	5	3	10	4
TTGGAGTGTTAAGGTA	alt_5240_fdr	13	8	21	19	23	13	16	11	18	10
ATTACGGTTAAAAGGC	alt_5240_fdr	3	5	8	5	2	4	7	4	12	3
TTGAGGTTCCGTTTTT	alt_5735_new	111	78	131	87	85	107	84	96	104	98
TTGACAACCTTTAGAT	alt_5735_new	73	75	108	86	67	85	80	78	79	82
CCATCGTGCACAGTTT	alt_5735_new	149	166	194	162	205	145	182	168	177	133
CAACGGCGTAGAGAGA	alt_5735_new	5	10	5	1	15	4	10	5	9	6
TTCCATTGTTGGTTGT	alt_5735_new	62	68	93	64	59	72	83	59	87	78
GGTTCCCTCCATGGAT	alt_5735_new	19	15	23	12	13	12	18	16	12	15
CGTCGCCTTGTCACTT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
GATTTTTTACGTGGAT	alt_5735_new	90	60	85	79	79	75	82	73	84	97
CCAGGGTCCACCACTT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
CCGGACACCCTTTGCC	alt_5735_new	6	31	6	6	23	3	26	5	23	6
TTATTTTAGTCTCTTT	alt_5735_new	33	23	27	15	34	33	23	23	24	22
ATTCCCGATCATCAGC	alt_5735_new	4	10	4	9	5	7	6	2	2	2
TATACCGGGTTCAGGC	alt_5735_new	21	29	25	21	20	18	21	20	22	15
GATAAAGTGGGGCCTT	alt_5735_new	17	13	32	12	10	23	25	16	21	17
GGTGTCATGCTCGGCG	alt_5735_new	123	78	172	109	110	151	97	123	100	125
CAACATGTCTACCAAG	alt_5735_new	0	0	0	0	0	0	0	0	0	0
GGTTCCAGTAAACTTC	alt_5735_new	85	54	96	76	47	83	61	57	59	65
GCTTCTAGCCTCCTGC	alt_5735_new	18	12	17	10	13	14	17	20	20	21
GCTATGGTGTAGCGAC	alt_5735_new	0	0	0	0	0	0	0	0	0	0
TAGCGACTATCTCATG	alt_5735_new	0	0	0	0	0	0	0	0	0	0
CATCGGCCCTCTAAAT	alt_5735_new	100	86	124	94	94	88	80	92	91	112
GTCCATTGGGGTTACG	alt_5735_new	35	29	37	42	26	43	37	34	33	32
TGGGTTATCAGGAGTT	alt_5735_new	37	39	43	36	44	42	48	41	35	36
TCAGGTACGTAGGGCT	alt_5735_new	6	9	10	8	5	10	4	10	13	9
TACGCCTGGCTCGCTC	alt_5735_new	0	0	0	0	0	0	0	0	0	0
CGTCCTTTGAAAGTAA	alt_5735_new	43	41	41	39	40	37	47	31	38	28
ATTAACGTGCATACTG	alt_5735_new	0	0	0	0	0	0	0	0	0	0
CTTAGCGCCATGATTT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
AGTTACTTATTGTTCT	alt_5735_new	83	74	106	59	79	90	72	104	86	97
CGATAGGTTGTTCAAT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
CGAGCTGCGTAAGTGC	alt_5735_new	85	52	88	76	55	60	53	53	66	64
ATCGGGATGCCTTTCT	alt_5735_new	10	1	1	1	0	1	3	2	0	3
GGAATTTCATTTACTG	alt_5735_new	28	12	40	19	14	32	29	33	29	31
CCGCTTTCTGTGATGC	alt_5735_new	91	102	104	69	92	75	106	84	98	74
GGTGTACTGCTAACTA	alt_5735_new	24	13	19	34	18	28	22	21	27	23
TCTGCGTGTGCTGTAT	alt_5735_new	83	59	66	48	60	58	52	57	81	55
CGGACATAAGTATATC	alt_5735_new	34	22	30	31	29	39	41	33	38	34
GGCATAATATTTGCAA	alt_5735_new	18	5	11	12	4	8	5	3	10	8
TTACGTATTTTGTATT	alt_5735_new	31	13	36	24	21	27	12	24	20	29
AACATTTTAATTTAAC	alt_5735_new	11	11	13	22	13	12	8	16	17	15
CGGACCTGTATTGTTC	alt_5735_new	0	0	0	0	0	0	0	0	0	0
ATGTATTTACTTTTAA	alt_5735_new	2	3	5	2	1	7	5	1	4	4
TTTCGGACGTACCAGA	alt_5735_new	167	141	221	162	129	175	155	147	142	166
CCCTAACAAGGTCGTC	alt_5735_new	4	2	3	3	5	3	2	1	5	2
ACGAGGGCTTGCACGT	alt_5735_new	4	0	5	2	1	3	0	3	0	2
TCTAGGGCTTCGAAGT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
GGTCTCCTGCACATTG	alt_5735_new	14	21	19	12	23	9	17	11	22	11
GAACGACACACGCTCC	alt_5735_new	76	51	88	54	60	69	65	78	88	61
ATCCGCCGTTGCTTTA	alt_5735_new	0	0	0	0	0	0	0	0	0	0
CCCACTACGCGCCATA	alt_5735_new	0	0	0	0	0	0	0	0	0	0
AGTCCAGTCCGTGTGT	alt_5735_new	24	38	56	37	25	33	16	23	27	35
TTGGGGATAGCCGAAT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
ACTTCGCAACCGACAT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
ACGGTTGTTCATGGCA	alt_5735_new	30	29	40	35	23	42	26	28	36	26
GAACTATAGTGGGACA	alt_5735_new	115	80	104	85	75	103	69	100	74	76
CGATGGTGTACTTGGC	alt_5735_new	384	293	444	350	278	345	307	332	285	385
CATTGTCCCAGTTTTA	alt_5735_new	0	0	0	0	0	0	0	0	0	0
AGACGCACCCCTTCTT	alt_5735_new	11	8	21	18	17	21	13	17	14	14
GTAGCGTGGTTCGTCG	alt_5735_new	142	91	162	119	96	139	86	125	117	111
CGGATTGAGGTGGCAT	alt_5735_new	39	31	58	40	36	48	39	57	32	51
GTCTTCAGTATCCTTT	alt_5735_new	15	6	15	10	4	9	8	10	8	10
CGTCGGTGCAATAATT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
ATTTGTGAGCCGCTTG	alt_5735_new	49	63	59	44	40	46	40	53	41	44
CCCTCGATGTCTGATT	alt_5735_new	0	0	0	0	0	0	0	0	0	0
TTCGTATCCTAAACCG	alt_5735_new	0	0	0	0	0	0	0	0	0	0
ACATCGTCGCGCTAAA	alt_5735_new	0	0	0	0	0	0	0	0	0	0
GGTTGAACGTCTAAAC	alt_5735_new	27	23	24	17	25	27	27	23	26	25
TTTTGCATGTGCACTT	alt_5735_new	4	5	8	4	0	3	3	3	2	2
CTCGGGCTGCTATTAG	alt_5735_new	24	10	20	20	12	18	8	16	13	7
GTCAGGTAGGCGCGCT	alt_5735_new	73	39	78	56	36	54	47	53	60	50
TTTGTCCGCTCTAGTT	alt_5735_new	134	111	134	122	112	119	84	130	91	99
GACAGGTTGAAGGGGG	alt_5735_new	0	0	0	0	0	0	0	0	0	0
GCCCAAGTTAAATCAG	alt_5735_new	0	0	0	0	0	0	0	0	0	0
CAGCTATCCCGGGCTC	alt_5735_new	0	0	0	0	0	0	0	0	0	0
TTACCCGTGTGTTAAG	alt_5735_new	14	25	9	10	38	5	29	10	23	12
GCTAGTTACGTTTTTA	alt_5735_new	7	8	10	11	6	8	12	5	7	9
ACCCAATCCGCCTCAC	alt_5735_new	64	31	75	45	60	54	49	39	49	57
TCTGCCCCTTACCGGA	alt_5735_new	32	35	34	38	25	31	31	35	45	21
GTCTCCACGCGGCATT	alt_4519_missing	37	39	40	37	50	29	50	45	45	35
TTAGAATCAAACCGTC	alt_4519_missing	0	0	0	0	0	0	0	0	0	0
TTTCCAAGACATCGTC	alt_4519_missing	16	23	31	20	26	14	14	20	31	15
TGGAACTGGGCACCAT	alt_4519_missing	63	129	79	70	84	80	102	78	113	59
GGGTGTCTGATTTGCA	alt_4519_missing	10	21	20	15	9	9	18	6	17	8
ACGATTAAGTTTCCGG	alt_4519_missing	0	0	0	0	0	0	0	0	0	0
TTTCCTTTCCGCAGTC	alt_4519_missing	0	0	0	0	0	0	0	0	0	0
GACTGCTATTAGACCC	alt_4519_missing	38	69	43	33	79	35	60	39	76	27
AACGAGCTCTAACGAA	alt_4519_missing	86	66	85	73	79	79	89	50	106	65
ATCGGGGCCTCCAGGG	alt_4519_missing	37	30	35	28	21	28	34	29	27	24
GAGGTCTATGGTTGTG	alt_4519_missing	10	16	9	11	13	14	17	7	10	1
CTCTCCCCGGTGATCT	alt_4519_missing	0	0	0	0	0	0	0	0	0	0
TGTACACGTCGGATAG	alt_4519_missing	10	21	22	11	19	9	19	15	22	12
TACTGAATTAGTATCT	alt_4519_missing	6	13	2	8	12	13	13	9	8	9
GGCCTAACTTCCCGGG	alt_244_upstream	32	21	58	39	20	39	24	31	18	26
GTTATCTCCTCTCACT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCCTTACGTCAAC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
AATTGAGACCCCGTCT	alt_244_upstream	39	20	49	33	18	23	18	41	31	33
GACTGGAACAACTGGG	alt_244_upstream	7	5	8	12	4	7	5	6	2	10
TGAACTGGCCACCTGC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCAGGTTGTCCCT	alt_244_upstream	53	29	55	50	25	49	26	62	37	31
ACTCTGTTTAAGAACT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGTACGGGGCCTT	alt_244_upstream	0	1	0	3	0	0	0	0	0	0
TCTACTGCCTACGTTG	alt_244_upstream	62	40	74	71	32	38	37	51	43	58
GGGTTTAGAATCACAC	alt_244_upstream	32	21	43	28	26	39	14	30	31	35
TGGTCCGGTCGAAGCG	alt_244_upstream	19	16	17	26	18	12	10	14	25	20
TACTTGGAAGTATCCG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTACAGCGTTGA	alt_244_upstream	119	52	143	113	46	102	39	88	47	92
GGCGCCACTCAGTTTA	alt_244_upstream	97	52	143	121	66	108	61	88	54	92
ATCGGGTGCGTTGTAT	alt_244_upstream	60	35	57	49	33	66	28	71	46	52
AACAAATATCTTTACA	alt_244_upstream	243	117	313	272	134	247	123	250	119	229
CACGGCTCGTTCCGCT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
AGGATAATGCTGGTAG	alt_244_upstream	40	22	50	34	11	29	12	34	18	39
CAAAAGTTCTCTAGAA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
AACTTAGCTATGTCCC	alt_244_upstream	38	23	33	48	15	45	30	39	29	29
ATCTTTAGATGTGGCA	alt_244_upstream	82	56	108	107	57	91	45	86	64	102
TTCAGTAACAATCGAG	alt_244_upstream	20	15	21	26	10	17	12	23	7	26
ACACTATTTAGCGACA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
ATCCATACCTTTCTCA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GACACTGGGGTGCTCG	alt_244_upstream	147	108	153	142	103	115	100	121	97	131
AGGATTTGATGACACC	alt_244_upstream	22	11	17	25	7	17	19	9	14	20
TCGTTTGTCAGCTCCT	alt_244_upstream	27	13	28	21	14	32	18	20	19	20
TGCCGGGTAACGACAT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GAAGAAAGCGCCGGGA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
AAAGCGTATCCCGTCG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGGGGCAAAACGT	alt_244_upstream	222	81	304	249	102	202	118	235	114	179
CAATGGCATTCTCGGC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CAAGAACACTATAGAA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TACAGGTGTTATCCGA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAGCTGGGCGCAC	alt_244_upstream	1	1	3	5	2	0	3	3	2	2
AGCTCGCGGTTCCTAA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTTACACCAGTCA	alt_244_upstream	32	25	36	43	20	34	26	40	27	27
AACTTCCGGATAACTT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGTTCATAAGTGA	alt_244_upstream	69	49	77	63	39	57	42	51	47	56
TGATGGGCATATCCAC	alt_244_upstream	34	17	45	20	14	22	22	36	10	35
TCGGCACGACCGTAGA	alt_244_upstream	7	3	14	2	8	7	2	10	6	9
CCGCGTAAGCCACTAG	alt_244_upstream	86	119	90	100	104	89	125	80	158	88
GTTGAGACGTCCACGA	alt_244_upstream	117	55	136	104	53	91	61	100	57	77
TTCTAATTTACATATT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CCATAGGCTTTTTGGA	alt_244_upstream	199	159	272	244	165	224	137	240	151	197
AGCCCAGCGGAAACAT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TAGATAAAGGTCTAAC	alt_244_upstream	323	182	418	365	145	305	154	286	187	285
TCAGCACATGTCCAAC	alt_244_upstream	89	39	101	92	55	84	67	70	53	62
GGTATTCAGCCATTAT	alt_244_upstream	144	68	179	148	61	138	66	149	91	110
GTCGCGTTGCACTACC	alt_244_upstream	8	13	19	15	28	6	17	17	13	12
TGTGGTTTCAACGTTG	alt_244_upstream	9	14	27	23	3	15	8	14	7	12
TTGGTTCTCTTGCAGT	alt_244_upstream	20	12	31	22	13	31	18	25	13	31
AGTTTATTCCCTACGG	alt_244_upstream	27	15	39	16	16	26	11	27	11	23
CTGATCCTTTTCGCCC	alt_244_upstream	1	0	2	3	4	0	0	3	1	7
GCGTTATCTGTTCTAC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTACCTTGAGGGCGC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCTCTAGCGTGGA	alt_244_upstream	234	120	281	233	149	209	125	218	132	199
CTGATCGGTAGTTTTT	alt_244_upstream	219	137	272	237	147	241	124	270	126	213
TTGCTTCTCATGCTCT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CGATGATGGGTGGCGC	alt_244_upstream	86	46	125	104	49	105	53	106	32	77
CACTGCCTCACTTTAC	alt_244_upstream	149	68	195	159	80	133	67	147	79	116
AGCAGGTTATACCATG	alt_244_upstream	64	32	86	72	48	65	38	60	46	53
TTGTCCTCTTTCTGTT	alt_244_upstream	51	16	82	63	29	55	29	50	27	61
ATATTTGATCTCGTTA	alt_244_upstream	89	40	123	84	44	77	36	76	47	73
CAGCTGGACTAATATC	alt_244_upstream	29	27	45	41	25	34	19	40	21	40
AAAGGTTTTCGTTTCA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CACCCCATCCAAGCTC	alt_244_upstream	42	15	52	58	27	54	14	21	17	35
GGTCGATTTCTGTAAG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTTAGAGAGTCG	alt_244_upstream	58	35	117	96	26	74	36	57	46	86
TTAATAGCCTATTCGT	alt_244_upstream	31	24	40	31	25	30	26	24	29	29
GGTTGTGGCAGGGCTA	alt_244_upstream	17	16	29	37	14	26	15	29	20	28
GCTCGGCTTAGTAAGC	alt_244_upstream	43	25	53	51	31	50	21	55	39	39
GCTGCGTCGCGCAGTT	alt_244_upstream	13	7	26	16	10	24	11	21	11	21
CGGTTCTCATTTCATA	alt_244_upstream	18	9	19	16	8	24	7	18	11	22
ATTCGATTTACTTCAC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCTATTCATTGGT	alt_244_upstream	27	12	33	30	16	18	18	27	9	30
TTGCTTTTGGATAGTG	alt_244_upstream	128	65	170	129	79	138	78	72	95	124
AGGTGGTACGCATGAA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TACCGTTTCTTCGAGT	alt_244_upstream	24	3	14	18	12	21	9	18	12	14
CTGTCGGGCATCGCCA	alt_244_upstream	125	33	109	127	51	105	30	109	52	86
GTCTTTTTTCAAGTGC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTCATGTTGTACT	alt_244_upstream	39	12	35	25	6	26	16	36	10	21
CGTTGTCACTGTACTT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CCATCGCTGACGTTTC	alt_244_upstream	54	18	65	44	39	44	18	44	34	37
GTTCGGCGGGAAGGGA	alt_244_upstream	319	123	348	303	151	283	171	275	157	278
ATATTTGTATTTTGTA	alt_244_upstream	126	59	153	96	71	126	63	150	45	102
CCTTGTTTATTAACAC	alt_244_upstream	28	13	27	30	10	13	25	26	17	13
TATATTATCACATTAA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
AAATTTTGACGATAAC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TTAACCTCCGTCCACT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CACACAGGTACCGCAG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GATGTATAGGTGTTCT	alt_244_upstream	253	128	287	289	123	260	174	240	164	234
ATGCTGGGAATAGATA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGTTCGAGATTAT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TCACTCTACTGATTAT	alt_244_upstream	140	60	167	153	72	142	74	125	59	106
GCGGGGTGACGTGGTG	alt_244_upstream	72	37	114	81	45	61	36	83	42	73
AAGTCTCTACTACGCC	alt_244_upstream	14	7	15	9	2	5	5	16	7	11
CACTATAATTTCTACC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TAAATCTACTGATTCT	alt_244_upstream	47	15	72	43	12	44	19	39	19	40
TCCCTCTATTTGTACC	alt_244_upstream	80	53	100	61	59	79	43	76	49	73
GTCCAGCTGGCAAGAT	alt_244_upstream	234	104	324	287	89	214	148	198	146	203
GGACTGGTAGAATGCC	alt_244_upstream	45	19	68	47	30	33	11	25	28	38
CGGCTTTGCGTGATGG	alt_244_upstream	221	88	255	188	79	208	91	203	87	155
CTCTCCCGATGCCTTT	alt_244_upstream	395	203	417	353	167	344	213	328	208	308
TTGGTTCGAGAACCGA	alt_244_upstream	300	159	389	300	140	329	159	248	167	254
ATGGTATGCCGGATTT	alt_244_upstream	26	16	26	18	13	27	12	12	13	18
TATGTAAGTGACTGTC	alt_244_upstream	106	48	107	114	58	89	50	105	64	96
TGCGTGCAAATTAGGA	alt_244_upstream	43	12	36	31	15	22	20	36	14	20
CTCCATTCCTCGTCCC	alt_244_upstream	6	15	1	3	9	4	12	3	16	2
TGTTAGTAAGAACGAA	alt_244_upstream	41	21	48	34	23	34	26	35	15	35
TCCCGGAGCATAGCCC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CACATGTGAGAATAGA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTAACACGGTGCT	alt_244_upstream	68	43	85	82	45	65	37	72	40	67
GTTTCACCTCGATTGA	alt_244_upstream	59	17	60	45	27	42	42	44	30	50
TCTGTCCCGTACGTTG	alt_244_upstream	96	49	110	110	40	101	46	95	52	87
GGTTTGCGTTGTATAG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GTATCATTAGGCAGGA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
AACCCCACCTGAAAAC	alt_244_upstream	60	28	70	69	19	44	24	50	28	34
TGGCGGGCTTATGCTG	alt_244_upstream	5	4	4	6	4	7	1	3	0	5
TGGATTTACTTGGTAA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCCCATGATCTTA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGACATAAATGAA	alt_244_upstream	120	80	177	121	84	107	92	132	89	129
AGGTTTCTTACATTTA	alt_244_upstream	152	54	180	143	58	136	59	129	60	134
GGCGCTCGAGAAATAA	alt_244_upstream	85	33	75	84	22	63	23	55	43	65
CGGATATCGGCATACT	alt_244_upstream	107	42	110	117	52	105	48	108	52	90
TTTTACGCTCTGTAAT	alt_244_upstream	23	12	20	22	11	17	13	19	11	18
GATTATGAGTCTTAAC	alt_244_upstream	58	33	66	68	34	45	35	43	36	54
CCTAACGATAGGGCGA	alt_244_upstream	4	0	1	3	0	0	0	2	1	1
TGGTTAAGTGTAAGGA	alt_244_upstream	20	8	13	10	11	13	7	12	7	16
TTCTTTTATTATGTAT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGTGAACGCGATG	alt_244_upstream	159	64	193	155	70	158	88	131	90	123
TTTGATGGAGGTATCT	alt_244_upstream	21	6	15	14	11	16	12	27	10	15
GTGGCGTGGCTAGTAA	alt_244_upstream	211	90	238	218	86	200	106	167	119	182
TCAGAGCTGAAATGAT	alt_244_upstream	3	7	8	9	7	2	3	5	7	4
CTATATTTTCTTAAGT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTAATTCCGGCCG	alt_244_upstream	34	16	48	46	25	38	14	37	21	35
TTGTTTTACACGGCAA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTACGGTGACCCA	alt_244_upstream	217	107	285	237	132	242	109	222	138	192
TTCTTGTTGCGGTCAA	alt_244_upstream	27	16	42	27	17	36	22	23	15	27
TAGTCGATGAGTACAA	alt_244_upstream	0	3	2	1	0	3	0	1	1	1
TTCGGTAGAGTGGATT	alt_244_upstream	71	30	86	87	44	73	43	65	38	72
ATTTGATCGTTAACTC	alt_244_upstream	82	30	91	75	39	58	44	78	37	74
AGTACACTTTTCAACC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TGGCAAGGCCCGACCT	alt_244_upstream	167	76	164	160	93	149	74	149	87	134
CCGATGAGAACTTGTT	alt_244_upstream	9	2	23	11	9	5	5	11	1	9
TCGTAAGTTACACTTT	alt_244_upstream	89	51	120	109	62	82	75	88	66	63
CGGGCAATTTGGCATA	alt_244_upstream	109	73	148	138	70	123	86	119	75	109
GAAGGGAGCCTCCTGC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTGGCGAGGTGG	alt_244_upstream	176	65	171	176	87	167	73	177	73	164
GCTACTCTCACCGGCT	alt_244_upstream	30	14	44	20	18	31	18	32	26	23
CTTGTTGCGATTGGTA	alt_244_upstream	143	81	180	149	67	131	87	149	82	131
GCCTCCATACGCCCTC	alt_244_upstream	178	139	250	211	134	206	110	214	141	162
GGGAGGTAAGATATGC	alt_244_upstream	79	38	87	84	25	70	40	80	30	53
ACTGAAAGCATAGTAC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GCTATAAGGTGACCTG	alt_244_upstream	0	0	0	0	0	0	0	0	1	0
TATCCTCTAGAACAGT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGCTGGCCAGATC	alt_244_upstream	179	90	229	188	98	177	132	167	121	141
AATTAGTGTCTGTATA	alt_244_upstream	81	39	87	89	36	80	43	89	38	74
CGTGCCATTCTCGGGT	alt_244_upstream	52	34	57	60	17	44	33	52	29	44
ACCAGCCGTTGAATCT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTGTAATTCTATT	alt_244_upstream	14	29	16	14	20	17	22	23	15	11
CGTTCTCAATCTGTTA	alt_244_upstream	40	28	53	32	16	29	25	35	19	26
GCGATCGGCCACGTTC	alt_244_upstream	70	24	59	39	34	54	29	52	24	47
CGCAATGAAACCAAGT	alt_244_upstream	120	56	137	108	65	114	58	95	58	85
ACGATGCGACACCGAT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CAGAAGCATGCGGCGT	alt_244_upstream	118	49	144	111	53	111	73	95	59	111
TACTAGGGATATTCCC	alt_244_upstream	74	42	71	77	34	57	45	54	41	70
TCGCTTCGTTAGCAGC	alt_244_upstream	83	40	88	65	24	73	43	55	33	53
TGCTCCTGAGTGATGC	alt_244_upstream	99	47	108	79	50	105	45	101	51	61
GGTATCAGTCATCATC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGATACCAGCATT	alt_244_upstream	57	39	68	66	23	47	24	60	23	47
TTGCGACACTGCCCTA	alt_244_upstream	3	2	12	5	3	6	1	9	6	8
GTTAAATGCCTAATCG	alt_244_upstream	38	15	46	38	12	33	18	31	17	37
TCAGTTGGTAATAATT	alt_244_upstream	52	15	51	46	33	52	30	55	33	48
GTGCCTTCAGCAGCAT	alt_244_upstream	346	156	414	342	169	307	168	301	186	311
TAACCTCCTCTCGAGT	alt_244_upstream	42	28	50	37	24	48	26	42	37	55
CTTGACCGCACAGTCT	alt_244_upstream	58	32	63	56	35	57	43	57	33	49
AGGGCTTTGAGTTCCT	alt_244_upstream	275	127	339	309	177	272	172	307	191	239
TTAAGACAAATCCGTG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GAATGAAGGGTGTGGC	alt_244_upstream	53	15	55	46	29	40	24	49	27	37
TATGCGGCAAATACTG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTTTAATCATTTG	alt_244_upstream	47	26	34	43	14	42	21	34	10	38
TGTGATATGCTTAATA	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TATGTACGGTTGGGGA	alt_244_upstream	18	12	33	33	5	12	10	18	5	15
GTTGCAAGCTGTCTCA	alt_244_upstream	45	14	40	28	15	48	8	33	22	26
CAGAGTCGACTACATC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAGGGCACCGACG	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
ACAATTCTTTTTACAC	alt_244_upstream	13	6	12	14	5	8	10	21	8	14
GCGCTCCTCATGAGCC	alt_244_upstream	26	15	38	24	17	22	10	27	15	16
TAGGTGTGGATCATCT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
TCATCACATTGAATAC	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTCTTTTCTTAAT	alt_244_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTCAGCACTTATT	alt_244_upstream	45	33	63	49	36	43	28	52	20	53
CGTATGTTGGCATGCC	alt_244_upstream	12	12	33	21	7	20	7	21	10	28
AAGGCAAATCTAGTGT	alt_244_upstream	19	9	25	32	9	22	7	14	12	22
CGTCCGGGGCCCGGGT	alt_244_upstream	7	7	9	18	6	8	2	11	10	13
CTGCAGCTAATAACAC	alt_5662_new	22	26	23	24	25	19	30	12	21	14
ATTTTTCCCCTGTCAA	alt_5662_new	141	187	129	125	235	106	216	95	212	114
CTAATCCACCCCTGGT	alt_5662_new	15	24	26	18	19	14	21	13	28	21
TAAAAGTCTTGAACCA	alt_5662_new	47	86	66	64	90	43	78	44	69	43
GGGTGAATAATGCAAC	alt_5662_new	24	56	36	23	61	29	87	27	58	23
CCTTATCTCCGGCCCC	alt_5662_new	5	12	11	9	14	12	16	8	12	6
ATTGAGGTTCTGTAGG	alt_5662_new	25	47	32	21	49	14	46	18	42	14
CTTACTATCCTGACAA	alt_5662_new	7	5	6	4	5	3	12	10	7	2
TGAGTCCTGGATTCCC	alt_5662_new	0	0	0	0	0	0	0	0	0	0
GTCATGTTTCAAAATT	alt_5662_new	0	0	0	0	0	0	0	0	0	0
CAGATAAGCATGTGTC	alt_5662_new	90	131	109	88	133	88	154	88	160	95
TTGCGCCATTGCCTCG	alt_5662_new	3	2	4	3	3	4	3	5	8	3
GTGTCAGCATATGAAC	alt_5662_new	13	23	13	9	18	15	16	11	21	10
CTTTATTCGTCCAATT	alt_5662_new	4	16	13	14	19	11	19	6	14	6
GCGTCTCTTTTACTTA	alt_5662_new	14	23	10	14	23	13	20	14	26	11
TATTTTGATCGGCAAA	alt_5662_new	12	14	22	18	15	10	15	17	18	15
GTTCAGGCTTCATCTA	alt_5662_new	3	10	8	3	3	2	9	5	12	3
ATATCGCATGACCATG	alt_5662_new	70	95	93	79	89	62	91	74	111	66
TAAAGTAGGGGCGTCT	alt_5662_new	41	44	37	37	65	32	50	38	50	29
CTATACTACCCGAATA	alt_5662_new	0	0	0	0	0	0	0	0	0	0
TCCCGTTTATCTGTGC	alt_5662_new	34	51	30	33	52	27	72	36	53	29
GTAAAGCCTCCGAACG	alt_5662_new	116	165	149	114	141	74	178	83	178	111
AGTTTTCCGCCCGCAC	alt_5662_new	11	15	8	4	16	5	10	7	13	6
GGTCTTTGTATTTTCT	alt_5662_new	21	37	25	22	41	14	23	16	34	22
ACTCGTACAGTGCTTC	alt_5662_new	0	9	5	2	2	2	3	7	9	2
TAAGTTCAAGCCATCT	alt_5662_new	19	22	13	6	16	11	27	21	29	9
GTGCGACCCGCTCCTC	alt_5662_new	0	0	0	0	0	0	0	0	0	0
AGGGCTACAATCCTGC	alt_5662_new	34	50	43	32	46	18	58	38	49	28
GCATCGGGCAAGAACC	alt_5662_new	54	60	48	36	75	43	72	28	79	25
TCCCAGTGTCTTAGTA	alt_1700_reverse	10	8	8	7	13	5	19	0	23	8
CCTCGTCCAATCTCGA	alt_1700_reverse	15	37	11	14	28	17	21	13	24	11
TCCATTAGTGCGTTGG	alt_1700_reverse	8	24	4	10	13	7	17	13	18	9
ATTATAAGTGAGTTCC	alt_1700_reverse	17	25	8	18	23	17	23	8	22	18
CATGGGTCCATTGTGC	alt_1700_reverse	3	2	2	2	2	3	3	1	4	1
CCCCCCGCTTTTATTG	alt_1700_reverse	0	14	3	1	9	3	13	2	11	0
TCGTTCGTGGCTGCGT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGTGGCCTATGAA	alt_1700_reverse	88	141	100	64	139	72	128	80	118	70
GAAAGTGTTAATCCCA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TCTATGAACTATGGGA	alt_1700_reverse	38	64	44	28	52	36	72	28	63	28
CCCACACTTCAACAAC	alt_1700_reverse	32	36	32	19	38	37	39	28	40	27
TATCATCCGTTGCAGG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CGCAAACGATGTTTCT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGGACTCCCGGAC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGTAGGCTTAGCG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TACCGCACTAAGAGGC	alt_1700_reverse	38	66	64	44	56	53	72	44	81	36
CTTTGTGGTGCCTCAT	alt_1700_reverse	5	6	11	5	14	5	13	12	14	7
GCTAGCGCCGTGGTAC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGTACGGGAAACT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGGTTCGTCTTC	alt_1700_reverse	72	57	61	44	68	58	68	49	87	32
GAGGTTTGCTCTGCAC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCACGACGTGGGT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TTGCAAACCCTGTCCC	alt_1700_reverse	89	227	91	80	218	62	230	76	223	57
GCCCAGCTAGGCCTCG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TAGTAGTGATTTTATA	alt_1700_reverse	18	17	20	17	12	17	13	13	15	16
TAAGTTTGCTCAAGTG	alt_1700_reverse	6	13	8	8	7	6	5	5	13	6
AAAACAGATCGGCAAC	alt_1700_reverse	34	28	27	15	36	23	26	24	33	21
TCAAATTATAGTGTCA	alt_1700_reverse	14	25	17	19	27	10	30	24	17	7
AGTCAACCATGGGAAT	alt_1700_reverse	8	13	13	18	14	13	24	8	18	7
CATTTTGGTTGATGGT	alt_1700_reverse	55	84	86	64	100	54	100	48	65	42
GGTCTAATAGCATCTG	alt_1700_reverse	17	26	29	16	29	26	43	18	45	16
CCAGGTGCAAGTATTA	alt_1700_reverse	25	50	38	43	68	14	41	20	62	18
GACCTTATACTTTGGC	alt_1700_reverse	42	67	52	43	72	42	63	24	80	44
TTGGGGTAAAACGCTC	alt_1700_reverse	58	65	53	46	60	42	69	36	73	49
CTACGGCAGGGGCTAC	alt_1700_reverse	34	31	51	47	30	26	49	45	41	34
ACGAGATATGATCTCA	alt_1700_reverse	2	2	7	4	12	8	10	4	2	4
GTAGATCTACTGCATA	alt_1700_reverse	33	36	40	32	52	30	61	21	42	25
GCTGTTAGCTTTATAT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TCCCAATAATCGCCTG	alt_1700_reverse	46	78	56	62	88	44	86	45	84	40
CTCGTTTAACTTAGTT	alt_1700_reverse	5	8	0	8	6	11	12	2	11	3
GAGGTAGAGTCGAAGG	alt_1700_reverse	62	101	60	61	68	69	96	49	86	53
ATTTGGTTGTATAGCT	alt_1700_reverse	50	73	59	53	72	41	99	47	71	44
TAAAATTAGTGGTTAC	alt_1700_reverse	47	83	78	57	82	62	61	60	102	49
AGGATTTTAACTGATC	alt_1700_reverse	3	10	6	1	9	2	7	2	8	4
AGCCCGTAGACGTTCG	alt_1700_reverse	97	152	126	74	187	77	198	93	186	62
TGGTCGTTGCCAGACC	alt_1700_reverse	74	77	103	69	84	87	99	74	94	70
GCTCAGCCGGTAACTT	alt_1700_reverse	20	59	28	34	52	24	49	24	68	18
TGTCTAGCGGTTCGGC	alt_1700_reverse	3	4	5	3	8	0	3	6	8	0
ATTTGCTTTAATTCCA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACGCGGCATTCGGTGT	alt_1700_reverse	6	11	5	9	9	2	11	3	8	13
CTGCACGTCGGTTCAT	alt_1700_reverse	3	3	5	1	3	4	8	0	8	2
TTTTCTATCTACTTCC	alt_1700_reverse	62	93	42	66	99	54	102	53	89	64
TTTTTGAGAGAGCATA	alt_1700_reverse	8	22	17	22	24	24	11	12	23	10
ACTCTTCCCCTCTGCG	alt_1700_reverse	32	60	41	40	57	27	74	38	75	27
GCTCTCGTTCAATTTG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CAATACATGATCGCCA	alt_1700_reverse	4	9	8	5	14	3	14	11	10	6
AGACTACGTGATTGAC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
ACATGCTTTGGATTGG	alt_1700_reverse	18	23	13	8	9	8	26	15	17	7
TCGTTAGAATTTCCCT	alt_1700_reverse	44	65	57	56	57	32	93	56	72	49
TTCTTTTTACTACAGA	alt_1700_reverse	8	18	8	11	15	8	12	8	16	10
ATGTCAGTTAACGACT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCTATCGCTTGATAGT	alt_1700_reverse	35	65	49	46	67	36	55	33	66	34
GGTTATTTCAGTCATC	alt_1700_reverse	16	37	28	22	27	28	38	24	40	17
GGCATTGATGTATTTG	alt_1700_reverse	11	18	10	13	22	13	16	10	26	11
CACAGAGCTTAATGAG	alt_1700_reverse	115	151	113	112	158	112	196	97	168	88
TTTTATCCAATCTATC	alt_1700_reverse	41	53	38	30	52	39	44	31	47	40
ACTCCTAGGCCACGTA	alt_1700_reverse	3	5	6	5	3	0	6	1	4	3
CCATGCGGATTGGGAC	alt_1700_reverse	18	47	32	21	43	27	43	29	39	19
GAGAATCCAGCCGTAA	alt_1700_reverse	24	28	26	24	27	18	48	20	35	20
ATGCTCATTCGCCTAA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GATTTGAACTCATGAG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CTATCCTATAATAGCG	alt_1700_reverse	22	48	31	26	36	24	49	18	32	20
GTATTCCAGCTGCGCT	alt_1700_reverse	14	33	23	14	47	19	53	22	42	19
CTACACCTCGTCTTTG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TATGTTTTCACTAGAC	alt_1700_reverse	8	14	17	13	17	14	18	15	25	11
ACCGTCTTGTAATTTA	alt_1700_reverse	64	114	91	62	127	70	134	71	120	57
GGCGACCCTTTGGATC	alt_1700_reverse	11	19	6	14	18	11	29	11	17	13
TTTTTCTCCCGTAGAC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGAGTGACATACG	alt_1700_reverse	14	30	19	21	24	25	41	10	30	18
TTTCATCTTTGTATGA	alt_1700_reverse	21	27	18	21	36	17	25	16	38	14
CTAGGGATTTCGTGGG	alt_1700_reverse	13	21	25	23	31	9	25	17	23	9
CGTTTCGGCCGAGGTG	alt_1700_reverse	8	20	8	4	14	12	18	12	25	3
TATTGCGTCTACGTGT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GAGCAGGTTAAACCGT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
AATGGGACGGCTGTTA	alt_1700_reverse	0	6	4	1	4	4	2	4	1	3
TCTTGGGAATCGGTGA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTACTGACGCTCC	alt_1700_reverse	26	22	28	22	37	21	47	18	27	23
GTAGTTTGTTGCCAGA	alt_1700_reverse	94	86	82	62	113	66	80	56	107	66
GTTAAGCTGTGACTGT	alt_1700_reverse	7	15	10	13	9	10	10	6	21	10
TGCTTCCTTACACCAT	alt_1700_reverse	25	23	23	24	12	20	33	15	31	13
ATCATTAGAGAAGTAA	alt_1700_reverse	7	15	7	7	11	2	20	6	17	4
TTCTGATGTGGTACCT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTCGGGGAGATTT	alt_1700_reverse	3	22	8	6	17	9	13	9	11	10
CTTCTGGGTATGTTTG	alt_1700_reverse	39	70	43	41	69	53	89	46	85	38
AGCCGTCAACGACATA	alt_1700_reverse	28	41	28	20	55	19	43	27	33	15
CTTGGTAATACAATGC	alt_1700_reverse	13	19	14	16	31	15	31	11	26	12
TAGATTCGCTTACATT	alt_1700_reverse	62	88	66	57	79	52	80	38	79	39
CATAGTACACCGAATT	alt_1700_reverse	1	3	4	2	3	1	4	6	6	3
TAAAAGTATCGGGTGT	alt_1700_reverse	2	0	1	3	1	1	3	1	4	1
ACTCCATGTTCATGGT	alt_1700_reverse	6	8	10	6	9	2	12	5	9	4
ATCAGCGCTAACATCT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTTGCTGGTCGTG	alt_1700_reverse	3	1	2	2	2	2	3	0	3	3
TGTCAGATCGCCCTCC	alt_1700_reverse	29	45	37	40	65	22	58	24	68	34
AGTAGTGAACTTCTGT	alt_1700_reverse	83	93	78	64	83	80	104	71	91	74
CTATTATGTATCTTGG	alt_1700_reverse	25	21	23	16	30	15	32	17	21	12
CCTCTACGTATATTGC	alt_1700_reverse	29	72	32	39	65	21	84	32	85	36
TCTTACACGGCACTTA	alt_1700_reverse	17	28	18	25	24	26	30	13	27	15
GAAAGATTTTTATAGG	alt_1700_reverse	49	73	42	51	56	45	97	41	75	44
CTTGTCATTAAGCTTA	alt_1700_reverse	25	19	13	15	21	23	21	12	21	8
AATAGTGGGAACGTTT	alt_1700_reverse	34	54	33	27	48	25	46	17	64	23
GGGACTATTACGTTAG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCGTCTATTGCTG	alt_1700_reverse	20	45	34	27	32	28	36	33	44	17
ACACGTGCAAGTTGTG	alt_1700_reverse	16	22	23	6	32	12	29	14	26	19
CGCTTGTTGTTAGGGT	alt_1700_reverse	12	17	11	7	22	15	27	6	21	17
GACTTCTTTCGCGTTG	alt_1700_reverse	1	0	0	0	0	0	1	0	3	2
TTACTCCTGATCGAGC	alt_1700_reverse	54	118	84	72	115	50	111	61	135	50
CTGTAACATGTGCGAC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTTACTTGTGTAC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCTTACGTTTGAGTGT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CGGGCAACGAGCGTTA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCTTATTCTCGGCGGG	alt_1700_reverse	74	98	75	73	113	62	96	72	92	59
CTTGCGGTCGTGCGTT	alt_1700_reverse	20	32	20	27	34	18	27	17	36	16
CTTTTTACCTTCGGTG	alt_1700_reverse	14	25	3	8	14	11	19	19	16	8
CTTACGTCAGGTCCAG	alt_1700_reverse	0	6	8	2	5	1	3	0	3	2
GGTCCGTCCTCACCGG	alt_1700_reverse	36	32	38	40	42	24	41	43	32	35
TAGTTGATTAGATTTG	alt_1700_reverse	7	18	16	12	9	13	7	9	13	14
CTTTCGTCCATACCTG	alt_1700_reverse	1	2	1	5	10	2	4	3	5	1
GCGTTGCTCATGATTC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
CTATTGCCAGCGTGAA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGTCTTATAGTA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TACCGGATATGCCGTG	alt_1700_reverse	9	30	15	24	46	17	51	15	40	17
TGGATTCACACCTTTC	alt_1700_reverse	2	4	1	1	4	4	2	4	7	3
AAGCTCTTCTAAAACA	alt_1700_reverse	26	17	19	16	24	16	29	19	27	17
ACGTGTGACTACTGAT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTAGAATCGTACTCGT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GTAAAGTTGTTGTATA	alt_1700_reverse	16	39	24	14	25	21	38	20	28	21
CAAGTTCCGATCCGAT	alt_1700_reverse	44	58	32	37	48	23	58	33	51	27
ATCACGAGGTACTCTA	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TACGCTGAGTTATTTT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GACCAGCATACTTTGA	alt_1700_reverse	26	34	25	17	41	29	40	16	39	26
TTTACGCCGACGTCAG	alt_1700_reverse	63	110	91	86	130	69	125	82	139	71
GAAATAGTCCATTCCT	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCTAGCTGTTGCC	alt_1700_reverse	4	14	4	1	7	1	5	4	11	4
GCCTTTTCAAAATCTG	alt_1700_reverse	5	7	5	3	5	3	3	3	6	0
TTATTTTGTTACGTGC	alt_1700_reverse	17	22	16	18	26	14	30	19	27	11
AAGGCCATTTCCTACC	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGACTTCAGAATC	alt_1700_reverse	59	68	66	51	70	50	74	48	76	38
TGGCATTATACTACAA	alt_1700_reverse	27	37	20	14	25	22	35	18	22	15
CACGATGGCCTGTAAC	alt_1700_reverse	46	75	52	51	89	37	81	57	99	37
GTGTTTTGGAAAGACG	alt_1700_reverse	0	0	0	0	0	0	0	0	0	0
TACGGGCTTGCGTTGG	alt_1700_reverse	10	19	18	8	16	11	9	10	16	12
AGCTGTACCGCGAGAT	alt_1700_reverse	0	5	3	1	9	1	6	1	6	6
AGTTCATGCTGACATC	alt_1700_reverse	34	57	39	31	55	42	57	37	77	36
CTTTCTATTTCGGCGC	alt_1700_reverse	27	28	24	34	24	17	28	21	34	24
TTTTTGGGTAGTATGT	alt_1700_reverse	55	86	72	47	85	46	85	54	74	48
TGATCATCCTAATATT	alt_1700_reverse	70	97	82	81	111	66	117	65	99	53
AGCATTGTGTCGACTG	alt_1700_reverse	168	237	193	158	210	159	230	162	268	164
TCTAACAAGGCTAACC	alt_1700_reverse	18	27	21	24	31	21	43	19	25	19
TGTCTAAAATACCTCA	ref_4372_reverse	18	26	13	15	22	16	23	12	20	22
CTAGAACGGCGTGTCC	ref_4372_reverse	40	69	59	36	100	31	86	49	80	48
AACCGATCGTTTGGTT	ref_4372_reverse	10	21	18	9	21	14	18	11	17	3
GTGGCTCCGGCGCAAA	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGAAGCGGCGCCC	ref_4372_reverse	9	19	8	11	13	10	19	8	17	5
TTGTATTGATCGCTTT	ref_4372_reverse	25	26	21	24	38	21	29	10	29	15
AAACACGTCGTATGTA	ref_4372_reverse	33	55	45	47	84	26	65	30	75	36
GTTCTATGCTTTCATG	ref_4372_reverse	6	10	13	8	14	10	13	3	25	5
TCATCGACCAAGGGAA	ref_4372_reverse	33	71	50	27	77	36	70	34	85	28
GTTGGATCATTTAGTT	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCTTTTACGTATT	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGAGCCCGAATGG	ref_4372_reverse	6	23	10	7	21	16	25	8	27	8
AATTACTAAAATCCGA	ref_4372_reverse	14	16	22	19	13	13	19	9	17	9
TCGAGGTTATAAGAAT	ref_4372_reverse	21	41	18	30	32	15	35	12	35	16
ACTGTGCGTGAGAGTT	alt_4372_reverse	10	28	31	17	43	24	33	21	31	9
CTAAGATTCATAAATT	ref_4372_reverse	9	25	22	19	38	13	29	23	27	9
TGATGGATCGTTCTCG	ref_4372_reverse	15	39	30	19	43	8	36	25	33	22
CATTCGGCCAACAGAG	ref_4372_reverse	24	39	27	17	38	23	19	8	43	23
GAGCTTCTTGTGTGTT	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGCCAAAGCCCAG	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
GTCAATTACGGTTAGT	ref_4372_reverse	20	24	21	10	34	21	34	18	20	18
AGTCAGCGACGGGTCT	ref_4372_reverse	20	34	20	18	19	14	37	24	30	24
CAGGGTCCAGCTGCCC	ref_4372_reverse	19	27	22	12	43	23	46	18	31	14
CACAGATCTCATCTAT	ref_4372_reverse	39	57	46	36	83	35	56	50	77	45
ACCTTCTGGCGAGACT	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGTGGGTCGATAT	ref_4372_reverse	56	92	64	62	103	50	93	50	95	50
CAGGCGATCGGTTCGG	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCTTGCCCTGATC	alt_4372_reverse	28	43	33	21	37	16	54	28	46	21
GCTGAACTTGTTGATC	ref_4372_reverse	36	72	28	39	78	34	52	21	77	23
AGTCACTACAATTCGT	ref_4372_reverse	3	9	0	9	10	8	4	1	5	1
TCATTTTTCAGTCGCG	ref_4372_reverse	2	6	12	5	11	5	9	1	8	4
CATTCTTTTCTTTTGA	ref_4372_reverse	40	52	50	43	50	48	52	46	56	51
CCTAGTACTTCGTATC	ref_4372_reverse	9	29	23	17	27	19	35	15	24	13
CCTGCCCCTGCGCATC	ref_4372_reverse	4	19	8	11	17	6	22	6	15	1
GCTGTACAAAGAGATT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGTTTAGATTGGA	ref_4372_reverse	19	32	27	21	25	23	25	15	32	13
GAAGTGTCCCGTACGT	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
CACCATTTACGTATAA	ref_4372_reverse	1	8	2	1	14	5	3	5	1	3
TCACTTAAAATCCATA	ref_4372_reverse	20	34	30	22	36	19	44	16	44	19
ATTTGCTAGAGTGTAG	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTAGATACGCCA	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTCACCAGAACCC	ref_4372_reverse	7	23	9	7	18	3	23	3	18	4
TCGCTCACGTCTGAGT	ref_4372_reverse	13	15	7	6	13	4	23	7	27	2
ACGGCGCTGTAGGAAC	ref_4372_reverse	7	14	4	5	17	6	9	3	14	5
TGCGCGCCATATCTTC	ref_4372_reverse	31	52	46	40	50	16	48	18	48	29
AAGGGTCCGATAGTTT	ref_4372_reverse	6	10	7	8	21	10	12	10	15	8
TTGTAAGTTTAGGACT	ref_4372_reverse	35	35	29	24	36	23	42	12	49	25
GCTTGGCGTAGTAGAA	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCGATCGGTTCGG	ref_4372_reverse	9	20	18	15	18	13	23	20	20	18
TCTGATCATGTTTTCT	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCCCTAATCAGGA	ref_4372_reverse	6	11	11	6	14	6	12	3	17	5
GTATCTTCCGAGCTCC	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
CCTGATCGGCTTGATT	ref_4372_reverse	32	65	37	16	55	22	81	16	83	25
CATTGAGCTTATTCGA	ref_4372_reverse	8	7	5	9	10	4	15	7	7	5
GCGATTGGCTTCACGC	ref_4372_reverse	7	15	8	5	16	7	15	7	13	6
AATAGGCTTCATTCCT	ref_4372_reverse	8	14	8	1	12	7	14	8	29	5
GATGTGGGTTCCGCTT	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCGTGCCCCATTG	ref_4372_reverse	12	21	20	14	33	8	25	13	17	11
CGTTCCCACCAGCTTA	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
TCAATTAGAGTACCCC	ref_4372_reverse	23	37	16	14	40	15	41	8	29	11
AGCATCCTACTGTGTT	ref_4372_reverse	0	0	0	0	0	0	2	1	2	1
TATTGCTGGGTGCTAG	ref_4372_reverse	9	16	3	6	6	5	11	5	11	7
GACTTTCCAACCTTTA	ref_4372_reverse	0	0	0	0	0	0	0	0	0	0
TCGATACCTGATGTGC	ref_4372_reverse	46	110	84	75	119	66	107	55	132	54
ACGTGAACAGGAAAAC	ref_4372_reverse	4	8	5	1	6	6	5	8	5	3
CCGCATCTTTCGTTGT	alt_3859_missing	238	293	286	239	340	250	336	225	353	237
ATTCTTAAGCAATTGA	alt_3859_missing	22	45	46	36	44	30	35	32	39	34
AGGAGGGCAACTGGCG	alt_3859_missing	13	13	18	16	16	13	15	8	27	7
ATCCCGCATAATCGGG	alt_3859_missing	185	158	209	176	157	150	201	162	188	181
GTTCAGTTTTTTACAT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
GCGCGCATATCAAGTT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
GATTTGTGTCAAGCAG	alt_3859_missing	7	15	15	2	15	3	4	7	12	8
CCCGGGTATATACACG	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
GTCAGATGATGCCATC	alt_3859_missing	26	29	35	21	41	31	29	26	36	18
TAGGTTCTAGAACAGT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
TGCCCTTTCCTGCTAT	alt_3859_missing	29	25	26	29	26	18	26	20	24	30
GTTATCCAGCAGCTCT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
TTAGCCGTAGTGTCGA	alt_3859_missing	6	7	9	7	18	10	15	8	9	10
TACTCTCGCCCGGCAA	alt_3859_missing	1	1	0	0	2	1	0	0	1	0
GTTAGCTAATGCAACT	alt_3859_missing	30	33	29	27	33	24	33	21	28	21
CCCTTGTCACATGCTT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
GATCCGAATGTCTAGC	alt_3859_missing	23	23	21	18	23	15	27	19	28	15
TCGTGCTGGCCAAACA	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
CTGCTTTGTCATATAA	alt_3859_missing	29	70	62	49	53	39	66	38	70	45
CTATTAATCGTATTTT	alt_3859_missing	13	26	24	24	25	26	26	21	27	17
TATATCGCGGTTAAGG	alt_3859_missing	63	93	97	68	62	52	87	71	100	63
TACCAATCTTCGAACG	alt_3859_missing	29	49	28	20	58	26	51	25	53	19
TCTCGGTTACCAGGCA	alt_3859_missing	19	10	26	22	16	14	18	18	26	11
GGATGTATTGCTCAGC	alt_3859_missing	74	96	97	80	100	88	119	74	123	65
TATTTTTTTGTGTTCG	alt_3859_missing	16	25	26	12	23	23	16	18	18	17
GATTATCTCCGTGGTC	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
TACCCTAGCTTTCACG	alt_3859_missing	99	104	126	101	137	121	132	100	143	89
ATGGGGAAAGTGAATC	alt_3859_missing	29	33	37	31	30	28	39	29	26	24
TTAATTTCGAGCTGCC	alt_3859_missing	8	7	9	9	4	9	9	5	11	10
GTGTACTGTTCGTCCC	alt_3859_missing	192	188	197	183	211	137	204	133	209	131
AGGGATATTGGGATTG	alt_3859_missing	48	76	72	73	69	63	78	47	73	42
AGAGTTTCTAGTGATA	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
CCGTATTATATTTCCG	alt_3859_missing	141	131	177	117	138	110	145	117	134	108
TCTGTCGTCTCCCCAA	alt_3859_missing	67	76	76	59	96	61	72	69	77	60
TGTCTGAGCTATTTAT	alt_3859_missing	44	27	37	46	31	29	28	24	40	37
TCAATCGTGAAAGTAA	alt_3859_missing	28	39	29	42	43	40	38	27	43	31
GTTAGTATCATACATG	alt_3859_missing	1	1	3	11	5	4	4	2	4	4
TCTAATATTATTATCT	alt_3859_missing	20	22	33	24	28	23	29	21	25	14
GAGCAGTCGGCTGAAA	alt_3859_missing	21	25	21	25	17	6	22	22	19	10
TAAGATGTTAAGCAAT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
TGGTTATGTGAATACT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
CAGCGCACAGTCCCTT	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
GAAGCAGTACTTACCA	alt_3859_missing	2	13	5	3	9	3	11	1	15	0
GTGTTTGCGATCATAG	alt_3859_missing	0	0	0	0	0	0	0	0	0	0
TATTTCGACTACAATT	alt_3859_missing	41	50	47	50	61	38	51	40	50	34
CGCCGATGCCAACTCT	alt_3859_missing	20	17	18	22	13	15	23	14	17	11
GGGCTCAATTTGCCCC	alt_3859_missing	3	4	4	3	13	3	6	6	3	4
CATGTCCTCATTATTG	alt_3859_missing	107	101	123	93	97	60	113	85	106	80
GCGCCATACGATCCTT	alt_5984_new	23	51	37	33	55	41	54	35	50	31
TCACTGAGGAACGGGT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GACGGCCTCTGTTAGT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TCGCTCCTCGGAGCCT	alt_5984_new	23	52	27	22	40	20	44	18	35	13
GCGGTGCGGGCCGGAT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
AATGGTTTTCCCACCA	alt_5984_new	7	29	18	4	29	16	33	16	25	8
TATGTTTTGATAGCTT	alt_5984_new	1	2	5	6	8	5	3	1	2	3
AGAGATCTGTCTTGTC	alt_5984_new	4	5	4	1	4	6	5	1	7	4
CATTTTTCGTTTCTGT	alt_5984_new	35	36	32	26	56	37	58	31	52	27
ATATCTTGATAAAGTC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CCAGGTTTCACCGATT	alt_5984_new	18	64	23	18	95	19	76	17	72	21
TCCCGGTGTTCGGGTT	alt_5984_new	2	3	3	1	1	1	5	0	2	1
TCGTGTTCGCTTAGGG	alt_5984_new	37	75	33	33	74	38	84	28	72	32
GCCCCCTGGAGGCAAA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GGACTTTTCGAATCCC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
ATTTATGAGCAATTAT	alt_5984_new	25	72	37	32	53	39	69	24	67	36
ACAAGGGACCGTTATG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
AGTCATAGCTTCCACG	alt_5984_new	47	82	45	46	83	33	99	28	105	34
AACCCCGTCGCACGCA	alt_5984_new	3	10	2	1	6	2	7	3	6	2
TTCACCTTTAGTGGCT	alt_5984_new	18	50	11	13	47	17	44	22	39	18
TATGTATATTCGTTAG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CTCACACAATACAAGT	alt_5984_new	98	226	144	114	226	114	229	95	222	80
CTATATGTAGGCACAT	alt_5984_new	25	21	20	22	30	11	30	9	38	14
AGCCGATGTAACAGCT	alt_5984_new	4	22	7	6	8	10	28	6	15	11
ATCTATCGTGGCCTTA	alt_5984_new	2	6	2	2	9	4	7	5	5	6
CGCGATTTACATTTGT	alt_5984_new	5	16	15	15	10	3	26	7	22	7
CAGATGTGTCGTGAGG	alt_5984_new	53	97	72	55	78	52	73	50	103	46
TCACATAGTGTCTCGT	alt_5984_new	1	2	0	1	3	0	2	0	3	2
ACACGTTAAAATGCGG	alt_5984_new	1	4	0	0	0	1	0	0	1	1
GCTCGGGCCCACTTTA	alt_5984_new	7	6	8	2	9	8	3	9	8	8
TTAATCCTTTATTAGT	alt_5984_new	9	22	16	8	20	12	21	10	38	10
GCCATAAATTAAGAAA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CGTTTTATGAGATATG	alt_5984_new	81	155	95	101	166	61	163	80	185	66
GCTGCCTGGGATAAAT	alt_5984_new	6	10	8	3	11	7	11	3	11	4
AATCCAATCAATTGGT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TCATGACGGGCCTCTA	alt_5984_new	1	2	1	2	6	0	5	1	3	2
GGGGGCTACCCGGCGG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
AGCGAAAGTTCGCCAG	alt_5984_new	12	10	4	11	21	15	17	9	20	2
GGGGTGGTTGGTGTAT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GGTTGTTCCTGATCAG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CGGCTGGACCTTCCTT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
AGGCTACGCATCAGTT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
AGTGCTTGGAGGCACA	alt_5984_new	30	66	35	35	68	36	84	25	66	25
GGAATCGGTATTCGGT	alt_5984_new	48	56	41	35	62	39	59	26	57	21
CCATCAGTTCCCGATT	alt_5984_new	4	21	6	5	15	3	15	7	18	10
TTTTTAAACTTAAGGA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TGTCTTTGTGGCAACC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CACGTTGCGGGACTCC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
AAACTGACTCGACTGA	alt_5984_new	7	12	10	10	25	9	26	8	16	5
TGCTCGGTTGGTCCCC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
AGTCCGAGCCGTATGT	alt_5984_new	21	30	24	18	39	13	42	14	37	15
GCACGTGTCGTATGCA	alt_5984_new	3	3	3	2	2	4	11	2	8	6
CCGTGATCATAAGTTG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GCCATTTCCCGCTGCG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CCTGGGTTATCGGCTC	alt_5984_new	14	37	24	25	40	24	46	14	24	21
GCTGAACTCCTGTTGG	alt_5984_new	8	14	10	12	8	6	7	7	14	7
TTGCTGGGTGCCCTAC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CACTGTGTTTATTTGT	alt_5984_new	7	8	7	5	5	8	6	10	10	1
ACAGCTCGTTGATTTT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TCCGATACACTATAGA	alt_5984_new	33	76	39	36	71	36	68	41	66	26
TGTGCCTAACCTGGGC	alt_5984_new	73	120	62	65	139	52	115	76	106	61
GATGCGGTCAAGGACG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TGTGGTTGCTCGTGTT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
ACTCTGCCGTCCGTAC	alt_5984_new	1	3	0	0	5	0	1	0	6	1
CGCCTTACGAAGCGCA	alt_5984_new	24	46	31	27	56	32	71	26	64	34
ATTACGCGCTCTGGAC	alt_5984_new	22	34	17	15	29	16	28	20	52	28
GGTATTCGTTCGGGGA	alt_5984_new	12	18	16	23	22	13	22	6	25	10
GGCGTGTCCACGCGAA	alt_5984_new	9	11	5	5	14	6	10	8	13	7
AACGACGCCCATGGGG	alt_5984_new	97	161	111	97	137	83	148	83	177	72
GCCCTTGTTTCAAAGT	alt_5984_new	11	24	19	17	22	13	25	10	33	6
TTTGGATTTTTGTCTT	alt_5984_new	18	29	23	30	36	29	37	18	45	15
CCAGTGGGCTGATTTT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TCGATAATAGATTGTC	alt_5984_new	4	4	4	3	5	4	7	2	3	5
TTAACGGCCCCGGAAA	alt_5984_new	8	14	9	9	16	8	19	6	13	9
CTTCCCCAAACATCCT	alt_5984_new	23	46	27	25	42	17	44	27	54	26
GCGTCCCGGTGCGGAC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
ACCTCTACCAGAATCG	alt_5984_new	4	16	8	5	18	10	15	2	16	7
CGTCTAGATGAAATTA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GTTTTCTAAGGGTACT	alt_5984_new	25	51	21	12	42	13	33	16	48	23
GCAGCTTAAATCCACG	alt_5984_new	3	14	9	3	19	9	25	6	19	5
CTTGGTGAGTGCTCCG	alt_5984_new	39	63	39	21	62	29	89	35	53	26
GAAGTTTAGCTGCATG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TATCACATCTCTTCTA	alt_5984_new	4	6	3	2	7	5	17	6	6	2
CAAGTCTAGCTCAGTC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CATAGATTGCGGTTGA	alt_5984_new	6	19	8	15	13	9	18	11	13	9
GGACAGACCGTACCTC	alt_5984_new	0	10	2	2	8	8	13	1	7	3
ATGAAGAGTCTTGGCG	alt_5984_new	4	9	5	11	12	7	12	8	12	5
ATCTTTAGTTGTTGAA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GACTTATTTTTTCGTA	alt_5984_new	5	5	12	1	2	1	12	5	7	4
TACGTGCGGGATACAA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GTCATGATGACTCGAC	alt_5984_new	13	22	25	11	24	13	18	18	26	19
ACGTGTCCATGCATTG	alt_5984_new	5	19	7	5	5	7	16	7	10	5
GCAGTTTTGCGGCGAA	alt_5984_new	12	39	24	24	22	30	28	15	37	23
TGCTCCAACAGATGGT	alt_5984_new	4	13	7	9	19	8	11	8	22	12
AGTCTATTCGAGGCCA	alt_5984_new	21	47	23	30	56	21	45	28	50	30
CGAGTAGTGTTAAAGG	alt_5984_new	1	11	0	3	3	1	4	5	4	1
TCTCGGACAACGACTA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TTCCAGTTCCTCGTGC	alt_5984_new	12	46	28	20	40	18	52	18	43	16
GGTCTTTAGACCCAGT	alt_5984_new	21	38	23	19	32	19	42	12	48	17
TCTTAGGCCATGGGTT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TTGCGAGCCACTTTCG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TCCTCGATATGGTCAT	alt_5984_new	11	8	14	12	25	11	21	11	23	7
TTTCTCTAATACGCTC	alt_5984_new	5	0	7	1	4	2	11	0	3	3
CTTTTTTATTCCGTAC	alt_5984_new	44	96	79	51	80	40	105	53	85	46
AACCACCCCACGATAG	alt_5984_new	3	5	6	2	6	3	10	2	10	1
GGTTCCCGCACCCTGT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GTTAGTAATAACTTAC	alt_5984_new	9	27	14	10	41	15	54	11	33	6
AAGCCCGGAGCAGTGA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GCCTGCGTTTACCGTC	alt_5984_new	5	33	3	2	28	4	28	3	29	3
TTCAATTGCTTTCTTG	alt_5984_new	5	32	25	15	26	14	35	13	49	9
CTGAATATCTTGTAGG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CATTGTTCCCTCTTTC	alt_5984_new	96	201	136	73	233	128	246	107	204	120
ACCTCCCTATCCACCG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GCAGTCACCAAGGTGA	alt_5984_new	14	25	21	18	20	7	30	11	24	12
GTTTTTTTGTCGATGT	alt_5984_new	9	13	11	9	16	5	23	7	15	10
TGAACTCGGACGCTTG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CGCAGTATGCAAAAGC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CTATGTACACTCCCTT	alt_5984_new	1	22	2	1	28	0	19	0	17	0
CCTGAGAAAGGAAGAC	alt_5984_new	17	22	14	10	23	13	25	10	39	7
GTGGATTAATCGTAAA	alt_5984_new	1	6	5	2	4	2	2	3	5	2
CGACCGCTCCTCAGCA	alt_5984_new	0	0	0	0	0	0	0	0	0	0
ATTTAATAACGCAGGG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TACTAAGACTACGTCT	alt_5984_new	7	19	11	7	11	6	16	9	18	6
ATTATCTGAGATTGGC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CCCATGGGTGTCATGC	alt_5984_new	2	5	1	2	11	8	9	2	11	9
GTGGGAAACTCTCTCT	alt_5984_new	21	37	40	18	51	26	32	41	42	33
ACTAGCATCTGTGGAT	alt_5984_new	14	20	14	7	24	3	18	12	37	8
TCTCGCCCCACCGTCC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CCCCTCACCCCCAGAT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GCACGTGGGGCTTACC	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TAATCACCAGATTGCC	alt_5984_new	11	21	8	16	39	8	28	14	28	15
GTGTACAGATTGTATT	alt_5984_new	0	0	0	0	0	0	0	0	0	0
GCCTCTGTCCTTCTTT	alt_5984_new	0	0	1	1	3	0	2	0	2	0
AGTGATCGATGCGCAT	alt_5984_new	11	25	12	12	27	11	22	9	23	10
TTCGCATCGACACGGG	alt_5984_new	6	13	8	7	6	4	13	8	10	4
GGGCCTCGACTACCGA	alt_5984_new	3	1	2	3	4	4	9	2	7	0
TTTTGCGACTTTATCT	alt_5984_new	44	44	30	31	45	38	50	25	57	34
TTCAATTCAGTATATA	alt_5984_new	8	22	11	9	13	12	24	6	16	14
TCTGGTAGCAAGTCCG	alt_5984_new	21	57	29	21	43	25	37	30	46	30
ATGCCCAGGTTAATAC	alt_5984_new	11	25	18	11	29	16	28	10	27	14
CGGGTGTGTAGGTTTC	alt_5984_new	12	41	11	4	35	16	29	12	44	13
CTGGGTGAGCTCTCCG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
CAATTTCGGCTAATCG	alt_5984_new	0	0	0	0	0	0	0	0	0	0
TGTGCGGTAAACTTAT	alt_5984_new	17	33	29	16	46	21	55	21	36	16
ATTCCAATCAATTGGT	alt_5984_new	130	259	164	148	284	146	255	143	314	126
GCATTGAGACTTCCTC	alt_5984_new	22	87	41	35	75	49	59	33	80	31
TGTATTTGCTGTATTC	ref_1720_reverse	3	3	2	6	2	4	3	2	1	4
CTATTCGGTGAGTCAC	ref_1720_reverse	143	113	179	134	126	135	119	112	106	134
TGCAAAAGTTTGGACC	ref_1720_reverse	19	29	25	23	15	15	20	20	28	19
ACTGCGAGTGAAAGAT	ref_1720_reverse	167	161	172	146	142	109	177	129	191	127
GTAGACCCGAAGCTTC	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTCTTCCCGGTTT	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCGCCGAAACAGC	ref_1720_reverse	24	12	19	12	10	17	14	20	14	14
TCCAGCCGCAGCAATG	ref_1720_reverse	10	22	14	16	19	9	12	18	15	11
AGCCGGACCGCCCGCA	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTGTAGCAGCCCA	ref_1720_reverse	52	47	56	38	52	41	45	52	50	45
ACCTGTTAAGCACTAC	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGCGAGCGAGCGC	ref_1720_reverse	75	92	116	95	113	98	91	72	113	99
TAGATTTCTGTTGCTT	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
TATCGGATGTACTATT	ref_1720_reverse	60	52	68	64	62	46	58	58	61	46
CTATTTACATCCTCCA	ref_1720_reverse	33	23	29	24	18	17	25	20	29	17
CGCCCGCTAGCACGTA	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTGAGGCTAATGT	ref_1720_reverse	21	30	25	26	25	27	32	20	28	15
GAAGTCTTCGCTACAT	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCCGTCGGCCCG	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGTTCCTAGCAGT	ref_1720_reverse	10	26	26	15	37	26	26	26	26	23
ATTTGGTCTGATTATG	ref_1720_reverse	59	61	77	54	77	69	63	56	69	44
TACCGTAGAAGGAAGT	ref_1720_reverse	19	21	18	13	11	15	18	15	17	13
TTCCTTATATTCCGGT	ref_1720_reverse	14	13	20	16	15	19	13	10	20	11
CTTCTAGGGGTTACCA	ref_1720_reverse	83	76	87	73	75	73	85	77	77	82
GGCCTTAGGAATTCTT	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
TGTACTCGCGATCATC	ref_1720_reverse	3	1	1	5	1	2	1	1	5	1
ATTTATAGAGCCGATT	ref_1720_reverse	73	88	104	77	88	89	96	57	107	77
TGGACTCTTCTTTGCG	ref_1720_reverse	2	5	7	3	3	3	1	6	5	2
TTAGGGAAGGTTGAAG	ref_1720_reverse	49	46	50	34	37	39	34	37	54	34
GACCTTCTTTGATATA	ref_1720_reverse	118	94	125	131	107	87	113	114	97	99
ATATGTATCGTTGGCC	ref_1720_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCCGTTAATTCTT	ref_4000_fdr	36	50	61	42	35	32	38	56	64	39
GGTTCAGATTCGATAG	ref_4000_fdr	56	63	71	58	51	48	50	43	57	46
CACGTACAAATTTTAC	ref_4000_fdr	42	29	36	47	31	30	22	37	29	36
GGCCGAGTACGAGGGC	ref_4000_fdr	16	19	26	16	15	16	13	13	14	24
TGGTATTTACAAAAAT	ref_4000_fdr	192	175	228	216	177	207	174	186	216	169
CATTGTGCTAGGTATT	ref_4000_fdr	129	97	118	102	86	94	86	97	105	81
GGGAGCATATCTATGT	ref_4000_fdr	20	18	24	23	22	15	23	16	26	16
TCTCCTCGGTATAATA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTTACAGCCAAC	ref_4000_fdr	139	135	178	173	118	155	127	125	151	115
CTGAAAGTCTATTTGC	ref_4000_fdr	138	98	172	128	108	119	116	151	126	115
AGTTTCGACTTAGGTC	ref_4000_fdr	38	34	51	50	46	42	61	32	40	41
CTTCCAGTTTAATAGA	ref_4000_fdr	31	26	34	40	29	28	24	31	25	32
TAGTTAACAAGTAATT	ref_4000_fdr	34	24	55	45	31	36	37	39	20	47
GCTTGGTGGAATATGA	ref_4000_fdr	13	18	28	21	18	13	21	8	25	21
TTTTTTTTGGGGAGTC	ref_4000_fdr	28	24	40	37	26	31	20	38	26	32
GGGCGCTGCATCTTAT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTTTATCTGTCCT	ref_4000_fdr	32	33	36	44	34	34	50	30	49	39
GGTGGTTTGATAACAT	ref_4000_fdr	2	2	1	5	3	4	1	2	1	2
GCCCAAAGCTTGCACA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GACACGCCGACATTGG	ref_4000_fdr	25	22	30	28	19	17	27	26	26	20
GGTCTTTAAGGGGAGA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
AGATACCGCAGTGCAT	ref_4000_fdr	66	35	58	75	63	62	50	52	61	60
TGTTTGTCTCTGCTTG	ref_4000_fdr	10	8	14	23	6	15	6	8	11	10
CTCGTGCTTTTTTTGT	ref_4000_fdr	78	74	109	79	75	89	71	59	62	63
TTCACATGCCGCCACT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTCCTGGTCTCGT	ref_4000_fdr	22	18	17	25	16	23	12	16	20	4
GATATCATATCTTCTG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCACTGCTTCTC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTAATAGTGTCGGAGG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CCTCAGAGATATCATA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
AGGCAATCGATAAAAC	ref_4000_fdr	56	39	38	52	35	39	34	47	35	30
TATTTGCACGCTTCCA	ref_4000_fdr	33	28	27	26	25	23	26	17	29	19
GCCCTCGCCACGTAAC	ref_4000_fdr	17	22	27	32	13	31	23	13	21	30
GTAGTCGGGAAAAAAG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCGGCGTTTCGCA	ref_4000_fdr	12	10	18	24	13	17	19	15	15	22
CGATTAGGGGGAGCTC	ref_4000_fdr	2	8	7	4	4	6	9	15	7	11
TGTGCGGTCCGATAAA	ref_4000_fdr	19	18	27	27	16	25	31	21	24	15
GTCTCCCGATAACCGC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTTTTATAGGCTA	ref_4000_fdr	19	18	18	12	14	9	13	11	21	12
TCTTACCCCTCCCGCA	ref_4000_fdr	94	73	120	76	91	103	84	77	95	80
TAATCGGCTTTGGAAT	ref_4000_fdr	11	15	11	8	11	15	6	14	7	6
ACTGGCTCAGTATACC	ref_4000_fdr	28	18	28	29	28	30	42	28	22	18
CGTGTAACATTCGTTG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
AGCGAGGTCCTATCCT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
AATCAAGATCCTGAAT	ref_4000_fdr	320	277	365	343	242	280	262	310	292	303
TAATATAGTTGGGACT	ref_4000_fdr	13	15	9	20	10	12	6	7	15	5
CGTATCAACATTCCGG	ref_4000_fdr	51	42	78	49	39	58	49	66	41	53
CACCCTTCCAGTCCAC	ref_4000_fdr	130	111	182	127	117	127	101	135	116	104
GGATGTACCTTTCGTG	ref_4000_fdr	58	45	71	52	45	55	53	67	45	43
AAAAGGACGGCGTCGC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTCCCAGCGTAGA	ref_4000_fdr	45	58	65	56	52	47	50	46	49	51
CTTCTTGCATCCGTCT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTCTATAACTAAAGTT	ref_4000_fdr	7	6	8	10	11	5	8	8	8	7
GAAAATTCATTAATGC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TGCAGGCATGGAGGGC	ref_4000_fdr	8	2	4	3	6	5	2	2	5	3
CCCCCGCCCTATCATC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CTGACTAGCCTAAGGT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTGTATATCGTCTCTT	ref_4000_fdr	21	21	28	32	28	16	34	20	25	30
TGGTATTAACGGGGCC	ref_4000_fdr	125	78	125	111	87	90	94	104	105	84
TTTTTTGGGAATTATG	ref_4000_fdr	7	1	2	1	0	5	4	1	0	6
GTGCTTGGAGTCGTTT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTAGAAGGAGTAA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CGAGACTCTGAAGTTT	ref_4000_fdr	22	21	42	22	15	32	23	25	22	27
GTTTCCACCGTCCCCT	ref_4000_fdr	14	10	19	22	22	25	21	24	12	15
GAACAGTGGGTTTCGG	ref_4000_fdr	28	17	44	35	20	35	30	38	21	33
GCTTGTGATTCATGGG	ref_4000_fdr	68	83	95	87	87	85	92	73	94	70
ACGAAGATTATGAAGT	ref_4000_fdr	5	10	13	10	7	7	9	8	2	8
TACTTAAATGACTCCT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TATAGAATGAGGTGTT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCTCATCAATTCC	ref_4000_fdr	245	224	288	279	210	254	246	254	243	225
TGTAGACAATGGTTGG	ref_4000_fdr	117	98	147	171	106	144	116	125	116	132
AACTCTTTTCTTATGT	ref_4000_fdr	154	92	198	172	102	152	106	136	90	131
ATCGTGAACAGTTCTC	ref_4000_fdr	1	2	1	3	0	0	4	0	3	0
TTCTCCCCGTCCCAGG	ref_4000_fdr	3	15	0	1	23	3	25	3	29	1
ATGATTGCTTATTAGG	ref_4000_fdr	21	21	28	24	40	27	18	24	24	26
GCCCGTCAGTGACTGC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CGGGAATACCCATACC	ref_4000_fdr	251	376	313	271	377	258	379	253	377	245
TAATCTGGGCCCTGTC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGTTAGCTTTCGA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TACTACCCCTCTTTAT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
AAAAATGTTTCGCTCC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GGATGTGCCCTTCATT	ref_4000_fdr	7	6	14	18	14	13	4	12	7	11
GTTTCATTTTCGCCAC	ref_4000_fdr	37	32	44	42	20	34	32	31	30	22
GTCATCCCATTTGGTT	ref_4000_fdr	20	16	19	16	19	14	25	25	15	15
TCCACAGTCGAGGCCC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTATCACTCCTT	ref_4000_fdr	15	48	10	11	42	17	52	12	52	12
AATCATCCTCCAGTGA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTCCGGTTAAGCT	ref_4000_fdr	76	61	93	71	74	74	61	65	82	67
AGTCCATGAAGGTTTA	ref_4000_fdr	18	16	15	15	20	11	16	16	19	13
TGCCACTGGTTTCTTG	ref_4000_fdr	51	49	67	51	35	44	29	39	49	38
CACAGGAACGCCGGAT	ref_4000_fdr	31	48	53	46	45	45	39	59	46	41
CTCAGCTTGGTACTAC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTTACTGCCTCTT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
AGTCATGACTTTGCCC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGCATTACAGTAG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GATGTTGTTCGCGGAA	ref_4000_fdr	21	24	40	40	29	26	29	30	27	31
GTGCCGCTGTTAGTTT	ref_4000_fdr	43	49	56	56	33	41	48	45	61	44
TCAGTGTGTCCGCTTG	ref_4000_fdr	117	84	143	118	87	93	99	121	129	77
GGTAATCCCTAGCGAT	ref_4000_fdr	11	15	11	7	8	10	10	5	9	11
TACGGGGTCTTAGCGT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GACATGGACTCTGTGG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
ACAGCAGTATAGTACT	ref_4000_fdr	85	108	101	97	101	86	87	82	81	90
TTTGGTCTGAGGTTCA	ref_4000_fdr	26	19	32	26	27	22	15	20	29	16
TGTGCGTTTTGCGGGC	ref_4000_fdr	127	112	135	104	105	101	94	95	119	118
CGATTTTCACGGGCTT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTTAGGTTTGAAC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CGTACTCGCGACAAGT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGTCAACAGGGCA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTATTACATGTTG	ref_4000_fdr	14	16	17	16	10	11	14	14	11	16
CACTCTTTACTCCTTT	ref_4000_fdr	38	18	35	33	30	29	33	29	30	22
TCGTTCGAACTGGGTT	ref_4000_fdr	21	25	27	31	19	21	31	28	36	16
GGTGCGAACCGGCTTC	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
ACGTGGTATCTACTAC	ref_4000_fdr	4	6	6	5	11	8	4	9	4	6
GACAATTTGGAGCGGG	ref_4000_fdr	0	0	2	0	0	0	0	1	0	0
GCAGGCAAGTCAGAGC	ref_4000_fdr	50	39	54	46	48	49	46	58	45	41
TTCCCTGCAGGCCGCG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GATTTAGAAATTCTCC	ref_4000_fdr	54	41	69	73	40	58	45	52	59	63
TTTGTGCATGACGCAC	ref_4000_fdr	7	11	11	8	4	13	18	8	16	5
CTCAGTCATCATTTGG	ref_4000_fdr	0	0	0	0	0	0	1	0	0	0
TCCTTCCGTGTTGAGG	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGTTGGAGGAGTA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTGACAGAGTATGGGA	ref_4000_fdr	88	75	108	75	69	67	72	72	68	70
GGCAGGCCTTATCGTA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTAGTCCTTTCCT	ref_4000_fdr	118	111	131	125	107	113	142	104	93	109
GGCTGATCCTTAGTGT	ref_4000_fdr	40	38	65	59	45	57	37	47	60	43
GGTCTTGCTGATTCGA	ref_4000_fdr	22	29	34	34	17	23	27	39	23	32
CTCGCCGTTAAATCTT	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAATCTTTGTTTA	ref_4000_fdr	6	13	11	9	13	6	10	10	14	6
GCTGTACTTTTTATGG	ref_4000_fdr	221	158	225	220	158	185	162	184	173	185
CTAACCTGTTTTTCCC	ref_4000_fdr	14	7	12	13	11	8	15	14	6	10
CATGTCATATGCAGTT	ref_4000_fdr	50	33	60	58	35	38	36	39	71	41
AAGTCTAGATTGGACA	ref_4000_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGCAGGTCCCTC	ref_4000_fdr	11	4	7	12	13	5	5	4	10	5
AGCAACTATCAAATTG	ref_4000_fdr	22	16	20	16	15	24	29	22	18	16
TTTTGGTAATAGGCTG	ref_4000_fdr	148	120	132	145	120	133	124	130	143	131
TTTTAAGTGCTGGCGA	ref_4000_fdr	6	4	9	7	12	5	2	7	6	4
TGCATATATCACGCCA	ref_4000_fdr	49	36	58	42	51	58	47	42	39	47
CCTTCTGCAATCATCT	ref_4003_fdr	24	40	25	17	22	18	27	18	24	19
ATTAAACGTTTATTAT	ref_4003_fdr	19	12	12	7	14	9	19	8	13	4
TTCGGCCACGTTTGAA	ref_4003_fdr	7	7	10	7	4	4	8	4	11	6
TAATAACGTTACAGAA	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTTCATGTGCTTT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCGGTTTCCTTAG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCGCTGATTCTTA	ref_4003_fdr	24	17	17	20	25	27	30	20	19	19
AGGTAAATCTTGCTAC	ref_4003_fdr	154	168	201	145	168	129	181	126	160	116
TATGAGTATTGACATG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGTTTCGCTTTGT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CAATGTATTTTCCATG	ref_4003_fdr	4	6	5	6	6	3	10	7	6	5
ACTTGGTCAGCTTTCA	ref_4003_fdr	2	6	7	3	7	6	12	5	4	9
TCGGTCACCAGTCTAA	ref_4003_fdr	10	17	18	10	8	14	13	12	21	7
CAATATAGGCGACGAT	ref_4003_fdr	12	4	11	8	5	12	8	12	8	10
CAATGCTGTCTTTACT	ref_4003_fdr	8	10	8	12	12	5	4	2	3	4
GGTTTTTATGCAGTTC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCCCAGTTCGTTT	ref_4003_fdr	0	2	0	0	0	1	0	3	1	0
CATATCAGCATCGATC	ref_4003_fdr	19	37	26	23	24	17	28	29	29	20
CTATTGGTTACCCGCA	ref_4003_fdr	7	5	5	5	11	5	6	9	6	5
GCATCATCCTAATCCA	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GCAATGTCTGCTTACT	ref_4003_fdr	25	32	40	29	37	22	28	39	27	25
CGCTCGGGCTAGGTCC	ref_4003_fdr	8	12	11	13	14	7	11	8	6	8
TATGGTTAACAGAATG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCACCTACTCCAC	ref_4003_fdr	17	19	19	18	23	23	32	18	30	12
CGTCTTAAACGGGTCG	ref_4003_fdr	22	25	16	22	11	24	21	18	28	18
TCACTTACAGATGAGA	ref_4003_fdr	154	143	193	138	136	130	145	125	139	135
AATGGTGATTCTTGCG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGATTAACGTTGAGTG	ref_4003_fdr	6	5	13	7	5	6	12	8	6	11
TGTCTTCACCCCAACT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GCCACGAAAGAGATGC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
ACACGACCGGCAAGTA	ref_4003_fdr	35	31	49	41	36	32	36	47	35	26
TTCCTTCCGAGAGCGA	ref_4003_fdr	25	26	27	29	23	21	25	21	29	23
CCTCCCATATGCTGTG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CCGCACTCGTTGTACC	ref_4003_fdr	2	8	7	3	11	6	15	3	14	5
CTACTTGGGCTTCATA	ref_4003_fdr	71	95	86	71	83	68	84	79	98	96
TCTGCTTAAACTGGCA	ref_4003_fdr	46	48	45	29	36	35	55	36	54	41
TGCGAGTAAGTCTTTC	ref_4003_fdr	6	9	8	10	11	11	8	7	16	6
CTGCGGTGTTCGCGTT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CACATGACACCTGAGC	ref_4003_fdr	13	11	18	12	13	17	15	15	12	6
TGCCCTAAATAGTCTG	ref_4003_fdr	0	1	1	0	1	0	2	2	0	0
GGAAAGTGCACTAGAT	ref_4003_fdr	9	14	6	9	13	6	5	5	9	8
GCTGATCCTACTCTCC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
AGATTATTTTTTTTAT	ref_4003_fdr	9	6	11	9	12	14	7	8	9	12
ACGCGGTGTCAAATGC	ref_4003_fdr	20	16	18	14	10	12	24	14	13	17
ACCTTGCCTCTTGAGC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTGCATCTTCTT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATCTGGTTAACG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTTGGACGGTGG	ref_4003_fdr	18	53	31	33	42	23	26	21	43	15
CGTGGTCGGTACATCC	ref_4003_fdr	23	39	28	16	27	18	30	18	39	17
CGTGACTTGACACAGC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCCTGATTCGGCT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
AGTTATCATATTTTAT	ref_4003_fdr	21	28	38	31	40	23	26	26	23	37
GTCGTCTGCACGGATC	ref_4003_fdr	10	23	18	16	9	12	16	19	17	15
GTGGCACAATCTTGTT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTATACTTCTGGGTGT	ref_4003_fdr	28	30	21	16	39	18	31	29	28	21
ATCGTCTAACAACAAC	ref_4003_fdr	3	6	9	4	5	20	15	8	22	12
ATCACTTCCCTTTTTA	ref_4003_fdr	42	57	47	37	73	32	53	33	75	31
TTCATTATGTCCTTGC	ref_4003_fdr	6	7	13	5	18	11	10	8	8	6
AGACATGATCCACGTT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GCAATCTTACCATAGT	ref_4003_fdr	77	128	87	85	155	68	146	62	167	55
TGATACAGCATAGCCC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TATTATTCATCGATCT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAGACAGGGAAGT	ref_4003_fdr	27	43	38	33	48	39	52	42	48	34
CTAGCGCGTTTAATCT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCTATAGATCCCG	ref_4003_fdr	0	6	3	2	2	2	5	4	9	2
GCGAGCAGCGGTACAC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGTCTAATGAACG	ref_4003_fdr	6	6	5	10	12	7	3	3	9	2
GTCTATCTGTTGCTCC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGGGCACCGTCTT	ref_4003_fdr	12	24	16	16	12	20	18	18	15	19
CTCGGAGACCCGACGG	ref_4003_fdr	44	51	64	56	61	48	56	45	81	31
GCTGGAGCTCAATGTG	ref_4003_fdr	10	3	3	4	6	4	3	7	5	3
GGAGTAACCAGGCCAC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTAAGTGGTATTT	ref_4003_fdr	4	16	7	6	12	12	12	9	18	8
CAGTAATATACCTCCG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTCCATGAGTTC	alt_4003_fdr	28	58	57	62	54	51	53	27	59	49
CATTCATGCATCAAAT	ref_4003_fdr	3	9	4	3	6	3	9	5	1	2
TCGCCAACATGTGGTC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGGATTGGTCCTAGTT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	1
CTCGCGTTATCGATGG	ref_4003_fdr	8	0	10	5	9	9	8	2	1	10
AAGACGTACCTTCTAC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTGGAGAATAAT	ref_4003_fdr	75	59	85	55	52	56	57	74	70	52
CTTGCCTTTTATGCCT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TATGTTGACGGAATCC	ref_4003_fdr	73	75	87	60	73	64	81	65	94	45
GCCCCAGACTGGTGAG	ref_4003_fdr	21	18	20	20	20	21	24	14	19	17
GACAGGAATTTTTAGG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGATGTGCCCAGACGC	ref_4003_fdr	40	46	35	42	62	36	61	36	39	25
GGGGCCACGATCGGGC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCCGTCTGCTCGT	ref_4003_fdr	9	12	4	8	12	13	16	8	13	7
CCCTGGCCAAGCCCTA	ref_4003_fdr	69	68	59	56	80	58	98	48	68	58
GCTTTTGTTGCATACT	ref_4003_fdr	53	62	36	45	63	44	51	34	56	41
CTAGATTACAAGCTGG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TATTATCAAGTAATTG	ref_4003_fdr	21	26	27	21	14	14	15	14	24	12
TCGGTAACTTTCATAG	ref_4003_fdr	47	76	44	58	74	33	63	47	69	52
AAGTTGATAAATCGGC	ref_4003_fdr	21	24	45	28	30	26	27	24	17	22
TCAGGTGCTCACCTTC	ref_4003_fdr	8	8	2	5	4	2	8	2	8	0
GTTTCGCACCGGTTGC	ref_4003_fdr	88	92	117	94	103	114	103	91	91	110
GAGGAGAGCTAAAGTT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
AAAGCGGTTTGCACTT	alt_4003_fdr	3	3	1	3	6	7	1	4	1	2
ATCATTCCCCACTTTA	ref_4003_fdr	30	47	30	40	65	33	64	36	58	30
TATTTGGTGGTCATTC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TAATCCTCCTCTGCAT	ref_4003_fdr	34	32	28	31	23	26	25	30	24	18
CTCTGGGATGTATACG	ref_4003_fdr	4	6	4	4	3	8	7	1	4	2
ATATTCCGAGAATGCG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGGACGCTTTAGC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTGGGAGAACAAT	ref_4003_fdr	43	53	57	52	65	55	39	57	48	38
CTACTCCTTATTTCCC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCGGGGTACTCAT	ref_4003_fdr	38	23	37	29	29	21	23	29	26	19
CAGTGCCGAATCATAG	ref_4003_fdr	29	18	27	25	19	12	19	17	23	14
GCCCCTTTATTTTTTT	ref_4003_fdr	13	9	20	16	6	10	20	13	18	13
CTGGGAAGGCATATAT	ref_4003_fdr	25	25	34	24	29	27	35	25	36	18
ATCGCATGCATTAACG	ref_4003_fdr	32	24	31	24	29	29	31	21	30	23
CTAACTACTCATATTC	ref_4003_fdr	111	121	117	105	78	94	96	93	115	100
TTCCTATGAAACAGGG	ref_4003_fdr	51	57	62	59	69	42	85	45	55	57
GGTCGGATTCTTTGAC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTTATATCTCTAGAAC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTTTGTGGTTATT	ref_4003_fdr	32	25	27	20	26	18	34	17	29	21
GGTTAACTGTCAAAAC	ref_4003_fdr	23	25	30	20	37	22	39	23	46	26
TGTCGGTCTTCGTTTC	ref_4003_fdr	7	7	11	1	5	3	7	4	6	3
AACCAGCGTACATCTC	ref_4003_fdr	38	45	59	35	56	41	50	28	60	38
ATGGAGACGCGGGTCT	ref_4003_fdr	81	65	76	72	80	53	94	91	81	66
TGACATCTTTGCGAAA	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGTTAGCAGGGGG	ref_4003_fdr	33	50	49	51	63	30	72	53	54	26
CTTGTCGAGGCCTCAA	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCTCTCTTAGCTA	ref_4003_fdr	61	57	96	64	70	72	89	65	55	52
CTGCAGTAGGCCAATA	ref_4003_fdr	26	33	44	43	45	38	48	41	45	30
TTTGTAACATTACTCC	ref_4003_fdr	6	10	14	8	8	14	9	11	18	4
GCGGCCTCTAGGCACG	ref_4003_fdr	39	40	75	42	48	37	58	37	60	47
AATAAGCCGGTCCACC	ref_4003_fdr	14	16	6	15	16	12	12	10	8	9
CCACATTTGTCTAACA	ref_4003_fdr	51	69	88	40	89	38	73	47	62	33
AGCCTATTCCTTACAG	ref_4003_fdr	26	26	35	21	41	27	31	18	19	24
ACATTTCTCGATATAC	alt_4003_fdr	46	78	43	46	77	47	73	32	77	42
CCGGCAGACTAGCAGC	ref_4003_fdr	18	17	22	7	19	12	20	10	22	6
CACCTAACTACCGTTA	ref_4003_fdr	66	96	72	53	93	77	88	61	107	58
ATATAGTACTTCCGGG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TAAACGATTCTTTTGC	ref_4003_fdr	1	6	5	4	3	4	9	7	12	11
GTTCTGTACTTCGTCT	ref_4003_fdr	25	23	32	21	28	19	36	27	36	21
CGCTTCTCTATCCAGG	alt_4003_fdr	25	34	38	25	53	32	37	41	36	31
GACTTTTTAGTGTTGG	ref_4003_fdr	21	9	17	11	21	10	11	12	19	9
CCCCTGGCAGAGCATA	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
CTTATGCTCGATAATT	ref_4003_fdr	6	7	5	1	5	1	5	4	3	6
TCTAGGGTTGCTCAGA	ref_4003_fdr	28	33	45	22	31	21	25	12	36	25
CTCCACTTATTGTCGC	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCTGCTGATCATC	ref_4003_fdr	13	20	27	12	18	9	15	6	16	9
TTGCACAAGTACGCCC	ref_4003_fdr	60	71	66	81	59	60	61	75	102	70
CATTAGGTATACGCCC	ref_4003_fdr	14	14	20	11	12	9	13	10	22	14
ACGGGACTTTCTTATT	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GGTATACGGCTCCAGA	ref_4003_fdr	15	7	8	5	5	7	6	13	14	8
TTTTTACGTCAGATTG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCTTATATGCATG	ref_4003_fdr	0	0	0	0	0	0	0	0	0	0
GCACGGCTAATCCGAG	ref_4003_fdr	22	20	24	19	25	10	26	14	28	20
CCCGACCACCGCTGAT	ref_4003_fdr	5	9	8	1	10	5	13	4	20	2
CACCTTTCCTGGGCAC	ref_399_missing	11	14	16	6	9	9	11	6	12	6
GCTCTATTGTTATGCC	ref_399_missing	14	10	19	17	11	14	13	7	5	7
CAATCACGCCCTTTCT	ref_399_missing	0	0	0	0	0	0	0	0	0	0
CCGTCGTGCATTAGGG	ref_399_missing	0	0	0	0	0	0	0	0	0	0
CTCAGGACGTCCCGGT	ref_399_missing	28	21	31	33	18	30	24	27	25	16
GTCGCGAGCTATCAGA	ref_399_missing	72	61	81	64	78	88	77	72	76	71
TATTGCAGTCACCGAG	ref_399_missing	20	15	28	16	11	26	22	16	24	15
CCCTAGTCTACGTGCA	ref_399_missing	0	1	0	0	2	0	0	0	1	2
CTAGATTGAATGCCTA	ref_399_missing	0	0	0	0	0	0	0	0	0	0
GGACCTTTCAGTATGG	ref_399_missing	0	0	0	0	0	0	0	0	0	0
ATTTCTGGTATGACGG	ref_399_missing	0	0	0	0	0	0	0	0	0	0
TTTCCGTTCCTTAATA	ref_399_missing	6	9	14	4	8	13	17	14	16	15
AGTTCGCTTTTATGTT	ref_399_missing	23	18	28	24	19	23	21	10	20	22
CCATATAAATATGTCT	ref_399_missing	0	0	0	0	0	0	0	0	0	0
GAGTGCGTAGCTTAGA	ref_399_missing	24	21	32	22	19	29	23	25	29	34
CGCCTCCGTAACGCTA	ref_399_missing	0	0	0	0	0	0	0	0	0	0
GAGTGTCGTTCAAACT	ref_399_missing	3	15	13	19	8	19	14	13	11	9
CCAAGAATTTATTCTC	ref_399_missing	70	51	75	76	38	69	79	61	52	58
CCAGTGTTGGCCCTTC	ref_399_missing	30	121	37	31	163	34	157	36	143	29
TCAAGGTCCCTTTATT	ref_399_missing	106	61	123	97	71	110	74	93	91	83
TTTTACTTAGATTTTT	ref_399_missing	3	2	0	3	1	3	1	4	4	2
TGCGATATTATACCCT	ref_399_missing	0	0	0	0	0	0	0	0	0	0
TCATTTGCATTTTAAG	ref_399_missing	19	16	13	26	18	11	17	25	14	13
CGCAGTGCGCGTCCTG	ref_399_missing	0	0	0	0	0	0	0	0	0	0
AGCAGCGTGCCTAATC	ref_399_missing	37	43	51	40	35	40	44	41	54	51
AGATTAAATCAGTTAT	ref_399_missing	0	0	0	0	0	0	0	0	0	0
TCCCCCATTTATTTTT	ref_399_missing	0	0	0	0	0	0	0	0	0	0
TATTGGGATTCTCTAG	ref_399_missing	49	41	61	53	47	47	64	56	52	51
ATGCTTTTTCTCCAGA	ref_399_missing	9	13	18	12	12	12	19	15	9	17
CATTCATCTCTAAATG	ref_399_missing	24	16	23	20	22	30	24	25	23	20
TACACTTAGCCTTTTC	ref_399_missing	0	0	0	0	0	0	0	0	0	0
CCTTTTATTGTCTTCG	ref_399_missing	17	34	21	22	37	22	25	17	38	20
TATTATATTCATTAGC	ref_399_missing	59	51	82	57	47	59	43	43	44	48
ATTAAGAGCCTGAAAC	ref_399_missing	29	22	32	30	16	23	24	27	24	21
ATATGGAGTCCCGCGA	ref_399_missing	23	25	23	21	17	25	16	22	18	22
GCGCGCCCGGATCCGG	ref_399_missing	13	14	13	12	10	8	8	10	8	5
CATTCCGTATTCCCAG	ref_399_missing	61	61	72	64	49	56	52	48	80	55
TATAAACCTGTGCTGA	ref_399_missing	17	14	17	18	17	13	14	12	13	19
TTAGTTATTGCCACGC	ref_399_missing	66	52	77	65	37	57	48	51	55	44
CCGTGCGGTGAAAATC	ref_399_missing	3	5	3	2	5	4	7	1	9	1
TCCGTCGACATGAAAT	ref_399_missing	27	62	31	33	43	35	40	28	53	21
TCAGGCTGAACGGGTG	ref_399_missing	11	11	18	19	22	14	11	10	13	12
TCGGCCCCTCGCAGAT	ref_399_missing	13	16	15	9	12	17	20	15	21	21
ACGTGTCTCTCTCTTA	ref_399_missing	34	35	44	45	25	36	34	40	37	38
TTCGGCCCTTGCTCCG	ref_399_missing	44	31	43	33	23	39	31	42	33	27
GACCATTCAGTGTGCG	ref_399_missing	23	34	23	18	12	20	42	17	26	17
TGCGATTCTTTCTTTG	ref_399_missing	0	0	0	0	0	0	0	0	0	0
TTTGTATTTTGAATAC	ref_399_missing	11	8	15	4	12	12	14	17	6	12
CCGAGTCGAGCTTGTC	ref_399_missing	0	0	0	0	0	0	0	0	0	0
GACTAGGTATCGAGTA	ref_399_missing	0	0	0	0	0	0	0	0	0	0
TCGAATTCGACATTGC	ref_399_missing	3	4	2	9	7	1	5	6	3	3
CATTGTTATTTGAGTT	ref_399_missing	28	34	33	31	18	30	21	27	22	22
ATTGCGGTGAATGGGC	ref_399_missing	8	7	12	4	7	6	3	10	5	10
GGACCGCTTGGCTCAG	ref_399_missing	89	91	103	90	82	100	94	120	96	87
TTGAATTTTCGATCCA	ref_399_missing	363	268	499	424	309	353	303	326	301	336
CCGCCTAGTTGGGTTT	ref_399_missing	105	72	119	123	79	137	77	94	93	87
GACATGACGCCAGCTT	ref_399_missing	27	24	42	36	15	34	15	30	22	20
TAATAATAGGGTCTTA	ref_399_missing	0	0	0	0	0	0	0	0	0	0
CTCAATCATTCGAAGC	ref_399_missing	28	24	35	36	26	27	30	24	40	41
AGCCAGGTCGCCTTGC	ref_399_missing	29	50	25	19	59	20	33	24	71	16
TCGGAAACACGGCCCA	ref_399_missing	0	0	0	0	0	0	0	0	0	0
TAACACCTGCCGTTGA	ref_399_missing	21	17	28	33	20	23	27	36	29	15
AAGGTGTTATTGTATG	ref_399_missing	30	25	33	19	24	37	23	32	29	27
TCGTGTCTAGCTGTTT	alt_292_reverse	11	10	10	9	16	13	15	6	14	7
GGGTTGTGCTCATATT	alt_292_reverse	17	36	20	15	20	21	41	28	26	14
AGCGGCTTCCAGCCTG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTGCTAAGATTCG	alt_292_reverse	12	16	9	11	14	8	11	11	21	11
GAGATTAGGAGTTACG	alt_292_reverse	37	51	47	37	64	34	66	41	61	39
GAGCTAATGAATTCAC	alt_292_reverse	27	52	22	16	40	18	52	23	61	26
GTGAGTCCCAAGCTCG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGAGGTCGCTTTA	ref_292_reverse	163	215	212	167	266	163	250	133	226	156
GTACCGGGCCCTTCGG	alt_292_reverse	6	13	12	3	11	9	16	5	12	7
ATACTACACTCCAGCC	alt_292_reverse	12	59	19	8	63	12	57	16	58	17
TTAGGCGTCACATATT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GTACTTGTCGTGTCTA	alt_292_reverse	19	23	15	18	17	13	18	11	30	8
CCTTTTAGGAAACACG	ref_292_reverse	56	59	55	50	72	46	80	52	70	45
GGCGCAGGTAGAGCAC	alt_292_reverse	47	48	35	46	46	38	66	34	60	30
ATTGTCGTATCTAGAA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GACTCAGTACCATTCA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGGCATAGACCTA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGTGCAATGTTAC	alt_292_reverse	31	57	49	23	65	45	63	32	45	24
ATCATTATTGTAATAT	alt_292_reverse	17	20	25	13	17	31	25	7	19	15
GTTCCTCCCTGCACTT	alt_292_reverse	12	15	10	9	27	8	22	3	19	4
CTGCTTCTTGCGCTGT	alt_292_reverse	6	8	5	7	6	5	11	6	8	10
GGCTTACTTTTTTAGT	alt_292_reverse	43	69	55	39	58	57	67	37	74	35
GTTAAGAACACCTATA	alt_292_reverse	21	16	13	4	12	6	12	11	15	11
GAGCTAGCATCATTGT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
CGCTATTTAAATAACC	alt_292_reverse	35	60	55	42	61	46	76	33	55	28
ACAGCTGGGTCCTATA	alt_292_reverse	100	184	133	123	166	106	176	92	198	93
TTCGTCGGAATTACTA	alt_292_reverse	4	11	5	2	4	7	10	3	4	4
TTTGCGTTGGCAGACT	alt_292_reverse	3	1	4	3	7	1	7	0	2	1
TGTCCTAACTAAAATC	alt_292_reverse	5	17	11	9	15	8	19	9	18	9
TCGACTTGTCTTCTGG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TTATCGACTGCTTCCG	alt_292_reverse	64	68	61	24	44	40	66	26	71	40
ATATTACGCTTTCTTT	ref_292_reverse	31	33	38	26	25	18	26	29	26	24
CCCGTTTTCTAGATGA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TTATGTGCTTTTATGC	alt_292_reverse	7	24	9	6	14	5	17	5	11	8
ACGTTGGGAAACCGGA	alt_292_reverse	6	19	12	2	17	14	22	5	24	16
AACCAGCATTGCACCA	alt_292_reverse	4	17	15	8	16	12	18	13	14	8
TCTGGAGTATGCATCA	alt_292_reverse	24	24	19	18	39	28	21	19	33	18
TGGTAGGCAAGGTCAG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
CCGATAGCTGTCGAAA	alt_292_reverse	56	112	78	58	104	49	112	49	96	57
ATTGGTCTCACTCTAT	alt_292_reverse	66	114	84	42	118	65	119	50	121	61
GCGGGGTGTGCTATAT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGGAGCCCAAGAT	alt_292_reverse	50	56	64	57	68	47	77	52	88	40
GTATCTGTTCGCGCGG	alt_292_reverse	70	85	75	58	68	49	105	40	127	56
TTCTTACTTCAAAGGG	alt_292_reverse	10	7	2	6	10	7	7	4	10	4
CATTTTTTGGGTATTC	alt_292_reverse	18	26	18	18	30	17	34	23	38	18
CGGTTCGGTCGTCCAT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTCAATAGCTCGC	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTAATTACATGTG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GTCATGGGCATGGTCT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GGAATAGTGCATTTCT	alt_292_reverse	3	12	18	11	10	8	19	9	19	14
CAATTCTGCGAACTAA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TGCTATGACTTATCGC	alt_292_reverse	121	119	112	100	113	88	167	112	124	77
CTCAGGCTCGGAATGG	alt_292_reverse	29	30	32	20	38	19	33	20	39	27
GTTTCATTCGCGCAAT	alt_292_reverse	10	16	19	19	25	14	18	11	21	8
CTGTATTTTGGATGTG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
ACTACCAGTTTTAACC	alt_292_reverse	26	35	39	29	42	15	47	39	52	28
CTTTAGACGGGCCTAA	alt_292_reverse	8	10	3	2	5	3	6	4	7	9
TCTATACTCGGTTCAT	alt_292_reverse	2	2	0	3	4	0	3	2	3	1
GCAGATGCAGGTAATG	alt_292_reverse	105	170	124	92	174	92	178	89	166	89
CTGTACACGGCGACCT	alt_292_reverse	6	6	3	6	4	4	6	8	4	4
CACCTCATGCTCTGCC	alt_292_reverse	11	26	10	12	27	20	18	19	27	13
TCTTTTTTCATGACGC	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GATGCCAGTTAACACT	alt_292_reverse	2	4	10	4	8	6	10	4	2	2
TAGGGAAGTTGGTTGT	ref_292_reverse	113	172	139	102	194	124	192	105	196	100
GAACACTGTGCGTCCG	alt_292_reverse	9	12	14	11	20	7	11	4	8	9
GACGACCCATGAGGCC	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
GAGCGTGGAGGAGGAG	alt_292_reverse	13	28	30	9	24	20	27	14	26	17
TTCCCCATTCCTCTAG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTGTATTGGCAGA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TATCTTCCGTCACTCT	alt_292_reverse	11	11	6	8	9	6	15	10	17	7
TTCGTTTTCACCTTGC	alt_292_reverse	25	48	41	27	33	36	37	26	44	24
CTTGTTAGGGACAGTT	alt_292_reverse	24	16	18	18	35	21	31	23	38	11
TGGTCATCTCTCACCG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCTACTTATGCCT	alt_292_reverse	2	10	3	1	6	0	19	1	25	1
CCGCAGGCCCGTTAGG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
CGCGGTTACGCTACCG	alt_292_reverse	15	14	26	12	20	12	25	10	26	10
GTGATGCCGTTCTCTG	alt_292_reverse	56	101	55	57	72	50	72	63	92	67
CCCTGGTCAATGACTT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTTTGATTTCCAT	alt_292_reverse	14	11	14	7	12	10	14	11	17	3
TATTTACAGCACTGAC	alt_292_reverse	11	29	16	14	31	11	23	7	24	9
TTTTTTGCCTCTTCCG	alt_292_reverse	35	55	41	46	42	51	48	29	49	18
CGCCGTTCCCTATTCT	alt_292_reverse	16	47	17	21	63	17	55	21	46	25
TTTCCAGTCTGACCTG	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
CTTAACTAAGGCATTA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCTTGGTTGCACG	alt_292_reverse	96	146	81	99	149	62	120	87	132	59
TGTCTCGCTCTCGACA	alt_292_reverse	17	25	31	22	16	20	40	23	33	22
ATCGAGTCAGAACCTA	alt_292_reverse	33	42	31	28	44	23	45	32	46	40
GCTCACCACCATATTA	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGCCATTGCCCTC	alt_292_reverse	3	14	9	3	14	3	11	6	12	9
GGGTGTTGTCGGCACC	alt_292_reverse	173	258	209	186	267	191	290	139	305	176
CGCGCGGGTCGAGGAG	alt_292_reverse	79	122	106	93	117	106	120	91	140	81
TTGTGGCCGGTTGTAA	alt_292_reverse	38	54	35	39	49	32	51	26	75	31
TTGTTTACCTAGTACG	alt_292_reverse	3	5	2	4	1	1	6	4	8	2
ATAACCCCAACTCGCC	alt_292_reverse	34	46	47	45	39	46	54	55	42	24
CAACCCCGACTCTCCT	alt_292_reverse	2	17	16	5	21	3	14	7	19	6
CGTAGCGTTGGTCCGC	alt_292_reverse	3	10	5	10	7	3	4	3	8	4
TCTCGTACTTGTTATT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
ACAATTCTACGGCTAT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TCACTGCAGATTACGT	alt_292_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCTTGTGTCTCCC	alt_292_reverse	20	24	26	24	35	12	28	16	30	16
AATGGATTAATCGGTG	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
TGTAAGAGCATTAAAG	alt_3781_RC	19	20	29	25	14	25	21	19	35	19
GTTATAAAGAGGTTGC	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
GACGAGGCGCTCCTTT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
ACCTTCTAGAGGACAT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
ACAATTGCTTGTACAG	alt_3781_RC	29	25	9	17	15	19	18	19	25	19
CCATTCCGGTCATTAT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
GCGGGTTCCGTGCGCA	alt_3781_RC	20	18	35	30	14	24	22	20	19	19
TCAGTGATATGGTATG	alt_3781_RC	17	12	13	5	12	8	19	10	19	13
ACACGATCCCTCTGTT	alt_3781_RC	8	10	8	5	14	8	6	15	12	16
TAGTACATCCCACATC	alt_3781_RC	7	57	8	7	74	2	85	2	98	1
GTTTGACGGGGCCCGG	alt_3781_RC	67	54	88	64	46	70	60	57	71	65
AGCCAACTGCCCGCAG	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
CACGCTCGAAAGTTTG	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
AAGCGTGGAACAATGC	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
TCCCCTAGCGGGTGGT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
TTATCGTCGATCATAC	alt_3781_RC	44	47	66	37	50	42	65	35	60	27
ATGTCGGCCATGGAAT	alt_3781_RC	36	36	59	41	32	31	28	48	52	45
ATGCGTATTTGTCGTA	alt_3781_RC	57	63	70	58	59	49	50	51	63	52
CTTCCCAATTCCTTAC	alt_3781_RC	14	16	11	8	23	5	26	6	30	5
TGTTGGATACCTCTCG	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
CGGGCGTACCTTAGCT	alt_3781_RC	8	5	8	6	6	10	6	13	8	15
GACTTAGTTGATGCCC	alt_3781_RC	134	149	200	190	117	157	154	120	147	125
GTGGGTGTCTCGTGAT	alt_3781_RC	105	78	108	90	97	93	92	105	114	79
GCTCTACTGAAAAATG	alt_3781_RC	23	19	26	20	40	20	18	26	33	23
GATAGGGCAGAACATA	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
CCCAGAATGCTTTCTT	alt_3781_RC	11	15	13	13	16	12	18	8	12	21
TTTAGGGACCATATTT	alt_3781_RC	20	8	17	24	16	14	15	15	23	15
AACTCGAACCTAAACC	alt_3781_RC	30	39	63	45	54	37	43	46	50	32
CTGCTTAACTTGTTCG	alt_3781_RC	93	107	118	102	104	103	86	99	95	94
TCTAGTGTCTCTCGGC	alt_3781_RC	78	73	95	78	65	73	77	68	77	65
ATAATCCAGGCCCCTC	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
ATAGAACACGAGATGA	alt_3781_RC	17	17	14	13	18	17	18	9	25	14
ATAGTAACCATGACCA	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
GCATTGCAAAACTTCT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
AAACCACGTTCGTCTC	alt_3781_RC	48	55	73	59	59	70	65	51	44	67
ATCACCTTCTAGGGAA	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
GGAAGGACAGTTCGCT	alt_3781_RC	17	13	34	21	18	16	10	14	8	17
AGGATTCGTAGAACGG	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
TGACTTGTTACATTTT	alt_3781_RC	122	64	102	103	83	99	85	108	83	78
CTCACGGCACATTGAC	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
CTACCGCTAGGGTTCA	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
TTTCGCCGTCGTCGTC	alt_3781_RC	47	49	76	54	53	65	87	48	79	50
GGGAATTGTACTCTTG	alt_3781_RC	411	352	423	404	396	391	358	354	423	366
AGATAGCGGTGTGAGT	alt_3781_RC	76	68	83	56	78	73	64	52	65	65
GGGAGTGGTCGCAATC	alt_3781_RC	83	61	94	97	96	86	70	74	73	78
GATCCGACGGGACGAT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
CTGCCTTCTCATCGGG	ref_3781_RC	100	72	114	94	74	98	77	88	84	69
TGTGCGATTCACTTCT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
TTATTTCCATAATTAG	alt_3781_RC	357	340	441	398	254	350	345	270	377	329
CGTGCTGTCGCTTTAT	alt_3781_RC	13	37	34	27	25	19	29	23	28	30
TAAGCCCAGTGAGATC	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
CTTTTGGTAGTGAGGC	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
TAGTCGCACCTTTCTC	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
CACTTCTATATCAGTT	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
AGCATCATCTCCATGA	alt_3781_RC	7	4	7	6	4	5	7	7	4	8
GCCCCCTAGGTACAAT	alt_3781_RC	33	23	29	21	18	32	23	35	43	30
CTGTTATTCTTGTGCG	alt_3781_RC	24	32	33	26	24	22	28	21	23	28
ATCGTCTATTCCTTCT	alt_3781_RC	39	37	56	50	36	59	48	50	63	41
GATCACTGAATGTTTG	alt_3781_RC	0	0	0	0	0	0	0	0	0	0
GGCAGAGTCACTGTGA	alt_3781_RC	70	89	129	88	99	88	91	94	100	62
AAGCCCACACCCATCA	alt_2069_fdr	29	23	24	34	14	25	20	36	23	27
GCGAGTTACTCCCGTC	alt_2069_fdr	1	4	2	3	2	2	0	1	0	2
CCTGCTATCTGTGAAA	alt_2069_fdr	24	107	39	28	143	22	137	28	176	25
TGGCCTATATACAGAC	alt_2069_fdr	13	9	22	17	9	16	3	8	11	7
TCATGTATTACTCCAT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTCTCTGGATACG	alt_2069_fdr	87	48	115	82	61	87	57	86	56	68
GTTTCCATGATTTGGG	alt_2069_fdr	90	48	108	105	46	58	41	68	47	55
AGACCGGTTGATGATC	alt_2069_fdr	54	29	55	65	29	47	38	45	41	60
GCTCTGTTAAATTCAT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCTACGGTTATCG	alt_2069_fdr	30	7	32	28	21	18	13	19	17	18
TCTGCAGGTACCGCAT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTATTCAGTGGA	alt_2069_fdr	89	41	89	86	54	64	30	75	42	75
TAATGATAGAAGCACT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAACTGAACCATT	alt_2069_fdr	217	104	253	206	125	216	133	171	147	196
TATCTTACGCTGCTTA	alt_2069_fdr	76	33	70	65	32	68	37	56	27	59
ATCCTTAGGGTCGGCC	alt_2069_fdr	56	39	74	73	45	72	32	73	37	65
TTGAGACGGATATATG	alt_2069_fdr	98	120	131	113	114	101	88	104	100	81
ACGGGAAAATGTGAAC	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCCTCCCCACGGT	alt_2069_fdr	80	55	115	139	45	95	70	101	53	97
CTCTGGGGGGCTCTTA	alt_2069_fdr	27	13	36	34	15	36	19	31	18	25
TTGGTTAGTTCACTGC	alt_2069_fdr	23	13	31	35	9	14	15	29	18	15
TCCGCGCCACGTGAAA	alt_2069_fdr	27	12	25	37	11	12	14	24	7	20
GTACATTCTCGATTAC	alt_2069_fdr	112	63	122	107	64	78	59	103	65	108
TGAGGCGTGTGGCCTT	alt_2069_fdr	17	15	29	17	10	17	11	21	14	30
AAGGCTCAACTGGATG	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CATAAAATTACCCTTA	alt_2069_fdr	39	27	44	57	39	47	32	40	36	49
CATGACCTTGGAGTGT	alt_2069_fdr	93	63	123	115	54	107	65	96	52	94
CTCACGGTTCTAGGAT	alt_2069_fdr	94	51	106	98	50	82	50	97	74	88
GCGCTAATCGAGCAGT	alt_2069_fdr	66	11	44	38	28	47	15	42	22	41
AGCAACTTTCCTCGTA	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GATGATGATTTTATCG	alt_2069_fdr	15	4	18	19	8	7	10	13	9	18
TTTAGTAGCGGAGTTG	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCTGCCAATGTTT	alt_2069_fdr	23	14	42	43	13	37	22	40	24	46
TGAGTCCTTGTTCTTG	alt_2069_fdr	81	32	86	85	34	72	39	74	42	79
AGTACCCTCGTCTAGA	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TGACGGTAGTTGTCAA	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CATGTCCTCGGTCTAG	alt_2069_fdr	24	12	40	41	16	20	12	28	19	20
TTTTCGACCAATCAAG	alt_2069_fdr	58	31	60	49	30	38	30	43	23	36
GGAAGGTGACGATTAT	alt_2069_fdr	71	34	107	89	36	78	34	70	34	54
CGCCATTTTGAATACG	ref_2069_fdr	476	158	505	496	170	399	212	435	177	397
CTGTCGGCAATGTGCT	alt_2069_fdr	34	20	39	29	17	40	17	47	12	36
TGGAATCTAGGTTGAC	alt_2069_fdr	62	34	67	76	46	65	46	67	43	69
TAAGATTCATTAGTTG	alt_2069_fdr	80	40	74	70	47	88	33	55	33	64
GGACAGATCCCATGAC	alt_2069_fdr	206	85	250	247	90	179	95	181	118	178
TTGGGTAATTGGATCT	alt_2069_fdr	183	80	234	146	74	195	83	167	87	154
GGATGTTCATATTACT	alt_2069_fdr	143	63	200	174	55	149	68	178	64	135
TCCACATTCGCTATGC	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GAAATAAGTAAACAAG	alt_2069_fdr	5	0	13	10	3	10	4	5	3	10
GTTTTCTCGTCCGTTT	alt_2069_fdr	70	27	112	69	22	53	33	52	33	49
GCTTTTAGCCCTACTA	alt_2069_fdr	18	7	18	20	13	20	12	29	10	19
CTGGATGAGATGTTGC	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
ATGTACTCATTTCGCC	alt_2069_fdr	25	15	26	19	8	25	7	22	15	33
TAAGTATACTGACCTG	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCCCGGCCTTAGA	alt_2069_fdr	9	3	14	4	9	6	6	11	5	7
CCGAGCGCTCGGTATC	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CGATGTGATCAAGTTC	alt_2069_fdr	175	117	260	191	105	196	132	186	146	180
GGGGCCGAAGGGTCGT	alt_2069_fdr	57	18	53	52	14	45	20	31	15	46
AGATGGAGTAGGGTTA	alt_2069_fdr	21	4	25	20	8	13	6	15	2	14
TGGCGACCCTCCTTGA	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTCCCGGGTCTCT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGGAACTATGTGT	alt_2069_fdr	64	29	56	77	32	55	35	50	26	48
ATACCCGTTGCTGGTC	alt_2069_fdr	62	29	78	69	35	74	21	70	31	47
CGCCGCCACTACTTTG	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CACCAACCATGACTCG	alt_2069_fdr	78	64	113	96	33	92	49	73	53	73
TATCTACCTGTTGCTT	alt_2069_fdr	8	8	12	5	6	8	5	16	2	8
AAACCATAGTGTTGTT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
ACAACTTTCGGATTGT	alt_2069_fdr	93	44	95	96	58	86	60	91	60	98
TAACTTCTATATTATA	alt_2069_fdr	18	10	10	13	11	10	6	10	2	15
AGTGGACCATACAGGT	alt_2069_fdr	105	62	133	141	43	85	58	101	67	95
TCTATGCGATCAGCGG	alt_2069_fdr	52	18	70	45	19	43	20	51	16	37
TATCCTTTCGTTAACT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTAGGGTCTTTTC	alt_2069_fdr	47	28	52	53	29	46	37	48	49	36
GATTTAATTTGGTGTC	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
AAATGTACAAACATCT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCTCACCTGGTTC	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTAAAACCGGGAT	alt_2069_fdr	84	38	118	85	38	73	48	97	40	86
ACCGTGGGGCTGGGCT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GACATCTTCTTATTCC	alt_2069_fdr	107	44	110	106	47	73	35	104	30	77
GCCCTTGATAATGTCA	alt_2069_fdr	21	8	35	9	12	12	10	13	8	13
CCGGCACCCGTGCCAC	alt_2069_fdr	111	52	102	81	65	114	48	76	64	91
CTTGAGGGTAGTTACA	alt_2069_fdr	183	74	257	206	92	152	75	192	88	158
GCTTCCCAGGCGCTTG	alt_2069_fdr	31	12	33	30	20	19	18	26	15	39
TGAGGCGCACTGACAT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CCGCAGCTGATGGTTT	alt_2069_fdr	457	220	525	513	265	427	275	446	246	374
ATTATTGGATTGTCCC	alt_2069_fdr	113	57	116	101	55	109	64	111	51	87
ACGTCGGCAAGTGGAA	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGTGCTTACCCTT	alt_2069_fdr	49	41	80	69	48	59	52	81	60	70
CTTTTGCAGGTTTAGG	alt_2069_fdr	55	28	67	49	26	46	28	42	23	57
GACCATATATCTTGGA	alt_2069_fdr	90	53	93	93	42	64	45	88	31	91
GTGAAAGGTGGCATCC	alt_2069_fdr	66	36	101	69	31	71	43	74	30	69
ACGACGCTTTTCCTCG	alt_2069_fdr	337	177	386	339	157	267	154	310	173	281
TCATCTCTTACAGGGT	alt_2069_fdr	37	13	50	35	16	30	12	26	23	38
CTGAAAGGGTCTTTTG	alt_2069_fdr	261	123	307	289	135	261	161	250	156	234
CGCGTTGTTGGTATGG	alt_2069_fdr	84	45	106	92	41	79	29	79	42	67
GTCCTCTTAGGTTATA	alt_2069_fdr	61	21	62	53	28	56	41	50	33	36
TATCAGGCTGGTGTCA	alt_2069_fdr	25	9	27	29	12	21	15	23	13	25
TCCGTCTAATGAGGTA	alt_2069_fdr	8	3	5	12	8	6	5	3	5	10
TACGTATCCATTGTAT	alt_2069_fdr	97	45	99	95	61	97	71	103	75	80
CGAGTGTGATTCTATG	alt_2069_fdr	70	37	76	74	36	71	37	62	37	66
CACTATTACGAGACGC	alt_2069_fdr	8	2	10	8	1	10	3	4	1	5
TGACCTCTCGTGAGAA	alt_2069_fdr	93	62	170	138	74	116	72	141	76	141
GCATATGTTTTCTATG	alt_2069_fdr	152	67	160	134	96	150	76	156	74	134
GATCTACACGGTATAC	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TCTATGATGGTGTGGG	alt_2069_fdr	125	62	119	108	64	92	84	118	69	109
CTGCTTAGAACAGGCT	alt_2069_fdr	50	28	60	71	24	54	42	60	33	56
ACCCTTAAGGCCTGTC	alt_2069_fdr	3	2	0	2	0	0	0	1	4	2
AGCCTTTCTCGCGCTT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTAGATCGTTAG	alt_2069_fdr	76	39	94	72	44	59	52	72	45	63
CTTGAAGCTTGCATGT	alt_2069_fdr	36	13	42	30	15	28	16	35	23	32
TTTGCACATCTACCTT	alt_2069_fdr	201	95	222	204	102	174	95	179	103	169
ATCCCAGACAGCGGAT	alt_2069_fdr	170	92	227	159	100	167	91	167	118	158
ATGTATTAAAGATCTC	alt_2069_fdr	72	40	103	119	45	80	41	103	37	77
TGTCTGGCAAGGCATG	alt_2069_fdr	14	2	11	14	9	15	8	10	8	12
GTTATTTGTTGTCGGC	alt_2069_fdr	92	48	123	87	47	83	44	71	57	75
AATGAGCCGGTTTCGC	alt_2069_fdr	50	28	46	34	31	43	23	63	20	51
GGTATCACTACGACAT	alt_2069_fdr	12	12	18	14	3	14	3	18	4	10
GGTGTCCTGCGTCTGT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGTATCGATTTTT	alt_2069_fdr	19	11	18	16	6	13	9	16	9	14
GTGCGTTTCACGGTTC	alt_2069_fdr	45	39	48	58	23	44	33	47	25	50
CTTTAAGCATTTCGGT	ref_2069_fdr	74	60	84	59	54	45	64	46	61	46
GGTCGTGTGTTATACA	alt_2069_fdr	73	36	78	65	37	64	35	65	29	65
AATTTTAGGCCTTAAG	alt_2069_fdr	10	2	12	10	7	12	8	7	2	11
ACTGTATGCGAATTGT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
GCCAATTATGTGGGGA	alt_2069_fdr	24	16	30	26	20	34	15	24	15	24
GTGGTCCTAATTTTAA	alt_2069_fdr	63	25	91	60	26	51	31	56	36	60
TATTTCTATACAGCCT	alt_2069_fdr	54	28	101	75	40	70	52	83	46	87
TCAATGTTCCCTATCT	alt_2069_fdr	15	8	23	19	12	14	11	18	16	17
AGTAACTTTTATGTTT	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
AAATATCCTTGTCGGG	alt_2069_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGGCTTGTCACAA	alt_2069_fdr	13	6	7	11	6	4	6	10	8	11
CAGCGTCAGTTCGCCT	alt_6075_new	8	31	8	7	19	5	19	4	21	9
TCTAGTACTACGCCGG	alt_6075_new	0	0	0	0	0	0	0	0	0	0
CTATGATTTTATTTGG	alt_6075_new	37	61	51	38	50	35	50	38	65	46
TTTCGCTATGTCTACT	alt_6075_new	4	3	4	6	5	4	8	1	7	7
GCTACCCAACTGGCTG	alt_6075_new	15	19	31	12	19	19	26	19	18	19
GTATCTTAAATCCATT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TGACCTCGACAGCTTG	alt_6075_new	10	17	5	8	9	17	22	12	16	16
TAAAGTCGATGTCTAC	alt_6075_new	14	37	26	22	21	21	25	15	40	14
CTAGCGCAATCGAGGG	alt_6075_new	9	8	22	9	20	12	17	7	10	8
GTTCTTCCGTCCACTC	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TATAACTACGCGGCCT	alt_6075_new	70	83	87	84	94	63	95	66	93	60
TTGTATACACATAACT	alt_6075_new	17	28	19	18	29	13	34	14	31	17
CCTAAGGGGCGTGCAA	alt_6075_new	16	53	32	26	40	28	47	21	49	28
CGCCGTGTGACCTCTT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TACGCGCGTCCTGTGC	ref_6075_new	85	115	123	104	125	79	114	95	127	81
TTTGATCATGCTTTCG	alt_6075_new	0	0	0	0	0	0	0	0	0	0
ATACTGAGTTTGAAAA	alt_6075_new	58	105	80	60	77	56	93	57	90	47
TGTTTATATTGTTTTG	alt_6075_new	34	48	25	26	50	25	43	25	33	26
TTCGTCTTCGGACTAT	alt_6075_new	3	4	1	3	3	2	4	2	3	4
TTTTACTGATTTCAGT	ref_6075_new	0	0	0	0	0	0	0	0	0	0
ATTATTAACTCGCCAT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TGGTCGTCCGCGCTGC	alt_6075_new	0	0	0	0	0	0	0	0	0	0
CTTCCATTTGCAGAGG	alt_6075_new	41	42	38	39	49	24	34	36	49	35
CATGAACATATACGCA	alt_6075_new	190	239	236	194	227	222	242	191	226	117
CCGGGCCCTTGGTGGT	alt_6075_new	36	76	60	49	72	42	81	45	70	50
CATTCGCTTTAAGACA	alt_6075_new	0	0	0	0	0	0	0	0	0	0
GCAGTAATCATCGCCC	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TTTCGACTGTCCTTCA	alt_6075_new	6	4	11	6	2	6	4	4	3	3
CGCACGGTCGCGGCTT	alt_6075_new	22	24	25	19	19	14	21	19	21	18
TACGCTACCACAGCGG	alt_6075_new	13	25	20	14	24	31	29	14	48	18
TCAGCGTATTTCACTT	alt_6075_new	11	7	9	9	5	10	10	10	17	13
CGTGTCCTCAATATGT	alt_6075_new	4	4	5	5	14	5	9	1	13	2
CATAAACCTGTTGTGG	alt_6075_new	0	0	0	0	0	0	0	0	0	0
ATCTCGCAAACTGCGT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
AATTATTGCCAAAACC	alt_6075_new	24	36	45	40	42	27	61	31	53	33
TTGAGATGGGAGAACC	alt_6075_new	9	19	17	20	15	10	17	9	23	13
GGCAATAAAGATCAAT	alt_6075_new	23	27	17	32	16	23	26	20	21	20
TTTGGTATTTTGGCTG	alt_6075_new	11	24	27	27	18	16	23	15	20	21
CTGAATATGCCCCCAA	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TATTAACTCTCCATCT	alt_6075_new	15	4	27	17	25	8	26	10	25	17
AAGTTACGCTATAGAT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
CTACAGCCCTCGCGTT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
AATATGCATTTCGGCG	alt_6075_new	5	0	0	2	0	3	4	3	1	0
TTGATAGTGTTACATA	ref_6075_new	119	124	126	123	130	112	149	107	154	88
ACTGTAGATCCTGTTC	alt_6075_new	14	7	16	8	13	9	13	8	14	9
TTATATAAGGTGCAAG	ref_6075_new	59	62	68	42	69	53	82	54	66	32
GTAGTATGGCCAGCAA	alt_6075_new	7	10	4	3	6	5	7	6	13	7
CCTATGTTTCCTGAGG	alt_6075_new	186	228	263	202	293	180	268	210	249	178
TTTCCCTTAACCGACT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
GATGTTTCGCTATCGT	alt_6075_new	42	40	38	36	48	32	37	29	37	37
TCGACTCGTCGCGCAA	alt_6075_new	0	0	0	0	0	0	0	0	0	0
GTTGCTATCCGGTGAC	alt_6075_new	14	14	16	4	14	10	17	5	16	10
TATACGGCTAGGTAAT	alt_6075_new	9	12	9	4	9	10	8	9	3	7
CCGCTGATCCTTAAAC	alt_6075_new	0	0	0	0	0	0	0	0	0	0
CACAGCGTCTCGATCA	alt_6075_new	22	51	50	33	52	32	47	33	63	28
TACGCCACGAGTGTCC	alt_6075_new	16	31	29	18	27	22	29	22	20	16
AAACGTTAAATTATCA	alt_6075_new	0	0	0	0	0	0	0	0	0	0
GAAGCGCGATTCTGTG	alt_6075_new	0	0	0	0	0	0	0	0	0	0
GTGGAATGAGTACGGG	alt_6075_new	66	117	97	69	101	74	94	62	98	67
GCGCCCGGATGCTCTG	alt_6075_new	57	74	63	63	58	49	59	55	54	56
TTCAGTTATATTTGTC	alt_6075_new	52	62	65	45	66	49	59	43	76	40
TCCGGCAGATTTATTG	alt_6075_new	35	47	43	28	46	42	34	34	47	23
TACTAATACCAGCAGC	alt_6075_new	0	0	0	0	0	0	0	0	0	0
CATTGATTCTCATATA	alt_6075_new	66	76	84	83	95	79	93	76	86	53
GTCTGGACCATGGACG	alt_6075_new	105	112	130	128	112	118	104	98	99	106
GGCATTCGCTCGCGAT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
CATGACAACAGTTGAC	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TTTGCCATCGGTAGCA	alt_6075_new	44	68	52	38	58	36	53	47	66	35
TAGCACCAGTTTCATG	alt_6075_new	15	11	21	4	17	11	12	7	18	8
CACGGTACTTTGCCAT	alt_6075_new	0	0	0	0	0	0	0	0	0	0
TCGTTCAGGCCCAGAG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TTGCTTAGTTAATTGT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CTGCGTGTCGTTCCAT	ref_5_negative	17	19	19	12	13	14	17	9	24	9
GACCCAGCGAGTTTTT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TTTGTGTGTGTGCACT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CATAGTGCGTTCTGGC	ref_5_negative	148	171	149	148	192	131	193	113	193	111
CCATTTGTTAAAGGGT	ref_5_negative	16	26	13	11	24	19	14	14	27	13
ACGATACAGGAATTGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GGGCTTAACTCTGGAA	ref_5_negative	41	58	40	42	50	36	66	36	57	36
ACCGCAGGGTATCGGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CGGGGGGCATCGAATC	ref_5_negative	5	10	17	10	23	12	18	11	21	13
ACCGTTTTGTTACTAA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TGACAGTGGTGTCGAC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GAGAGGCCCGCATACT	ref_5_negative	32	40	39	34	43	33	52	26	47	38
CACGTCAGATTGGGTT	ref_5_negative	4	2	3	6	4	4	6	0	6	4
GACTGTTTTAATCAGT	ref_5_negative	15	27	21	21	20	16	25	8	13	17
TGGGCTCAGAGTGTAA	ref_5_negative	78	96	83	65	84	83	98	54	91	62
TACGGCAGGTATGGCT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
AACTGCTATATGCTGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TGGCCTCTAGTCCAAC	ref_5_negative	38	39	56	34	60	43	26	39	54	34
GCGTCAAACTTAGGCC	ref_5_negative	228	248	210	199	262	170	275	174	230	149
AGAGCGTTTCCTGGAC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
AGTTACCAGCCGGTTG	ref_5_negative	21	24	25	20	26	14	35	11	19	23
TCGCTCTGACCCTCTT	ref_5_negative	2	2	2	2	1	4	3	2	5	2
CGATCTCGCTGGTCAT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GTGCATCATTTCTATC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TGGAATTGTTGGGTAA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GGTTTCCAACCTTGTG	ref_5_negative	19	34	27	15	21	16	19	25	24	22
AGCTCTTTTCGAGCGT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
AGCTATTGTCCCCTCT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TCACATGAACTCTAAC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CGTCCATTTATGATAT	ref_5_negative	5	6	9	7	9	5	14	8	2	6
GATCGACCTGTTCCGC	ref_5_negative	16	26	11	4	19	4	15	5	29	6
TAGAATTAGTCCGGGA	ref_5_negative	25	12	33	21	22	15	23	12	20	14
CTCCCCACAGTGGTTT	ref_5_negative	6	32	9	7	33	6	37	6	38	6
AGTCCGTTACAAACTG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GTGCCATGAAAACTAG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TAGCACTAGCTATAAT	ref_5_negative	4	8	4	8	14	5	10	6	6	4
ATATCCTCACCTGTGA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TCTTATCGCGCTGCTA	ref_5_negative	10	14	22	10	15	12	18	13	18	12
CTGCTCTCTACGTTTG	ref_5_negative	27	31	19	12	32	20	42	14	44	22
ATAAGGATTATATAGT	ref_5_negative	1	1	3	3	2	0	3	0	3	2
CCATTTCACATAGGCC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GCGACGAAGACTACGC	ref_5_negative	4	2	1	4	2	2	4	0	4	1
TCTATACGGATCATTT	ref_5_negative	131	147	138	144	190	137	191	120	164	117
TCGGCGTCATTCCAGA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GTAGATACAACATTCG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
ATTAACCCTTGGGTCT	ref_5_negative	1	3	4	4	4	4	2	3	4	1
TGGAGGGGTGATCAGC	ref_5_negative	15	20	13	11	14	16	13	18	18	10
GTGGAGCCACCAGACA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
ATATCCTAGGAACTCA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GTAGATAGTGTCGCTT	ref_5_negative	41	43	46	32	43	36	51	27	61	38
CCGGTTATTAGGTCTT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
AGGCGACAGTGCTTCC	ref_5_negative	2	0	0	1	3	1	2	0	0	4
GGCGGGACTAATTCTT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CTTAAAGGCGGACCGT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TTCCTGCTAAGAAAAT	ref_5_negative	1	4	4	3	6	1	7	6	5	3
TGTACGTATTGGTGTA	ref_5_negative	6	4	12	7	12	7	8	4	16	6
AACAGCGGCCACAGTT	ref_5_negative	27	38	41	20	55	26	32	24	41	34
ATTGCCGCTACGCCTC	ref_5_negative	20	38	26	39	27	21	46	20	45	12
TAGATCCTAAGGGCCC	ref_5_negative	68	70	76	85	78	59	68	58	92	57
AATGGTGGCGCGTCAA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TAACACTCTTTTCAGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GGCCGTCTTGGACACT	ref_5_negative	9	11	12	10	11	11	14	7	14	6
GTCTTGATGGTGGCTT	ref_5_negative	159	172	158	147	181	127	175	120	191	160
ACTGCTTCAATGGAGT	ref_5_negative	21	36	37	38	33	32	31	22	50	29
CCAATCGCAAGAAGAT	ref_5_negative	33	55	36	26	52	34	47	38	67	37
TGGTTTAGTAGTGCTT	ref_5_negative	23	31	18	25	36	12	31	19	35	28
TAGGGAATGATTTGGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
ATGTGTATAACGGCTT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TATACATCAGACACCG	ref_5_negative	11	21	25	18	21	12	16	11	16	18
AGTGCCCATGCATGGG	ref_5_negative	95	99	83	75	106	63	108	52	102	68
TGTGTCAAGTTCTAGA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TCTGGCCTAATGTGTA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
ATGCTGAATTAAAGCT	ref_5_negative	11	20	13	12	19	14	13	12	18	12
AAGCATTTCAAATGGT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TGGGTCCCAATTGCAA	ref_5_negative	53	73	58	40	75	43	66	55	75	29
TAGAGCGGATGCTTAA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TACTGGCTCTACATAT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CCCGGTTACGTGGAGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GCTTCCTTTATAGATC	ref_5_negative	82	107	103	107	126	81	123	72	119	76
TGCACGCGGTATCGTA	ref_5_negative	14	15	11	15	23	13	19	10	19	11
AACATCCGCACCACGG	ref_5_negative	38	50	53	43	29	39	57	37	43	40
CTCTTCGGACATACCA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TTCCGTTTTCCTTTAT	ref_5_negative	18	12	12	12	17	8	23	14	20	14
CTTTTGTTTGGCATTT	ref_5_negative	2	2	6	1	2	1	6	3	3	2
TATCACTCTTTTCAGG	ref_5_negative	173	236	182	173	244	148	258	143	230	130
CTGGCTCCTTCAATTC	ref_5_negative	29	50	45	40	50	56	39	32	48	26
TCAATCGCTATGTTTG	ref_5_negative	25	30	26	26	28	19	27	8	23	10
AATTACCATTGCTCTA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TTTGTCTTACTCCGCG	ref_5_negative	21	25	28	18	32	25	38	28	44	26
ACGCCTTGGTTTAATA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TAGGACATTAGACTGA	ref_5_negative	12	11	17	17	16	13	24	14	26	15
AAGCTATACCTGGGGC	ref_5_negative	31	13	26	24	25	18	21	26	22	22
AGTAGCCTATGACCTT	ref_5_negative	2	8	8	4	4	8	9	9	9	6
AATGATTATTACAGCT	ref_5_negative	26	48	36	29	37	31	40	31	41	28
ACGGGGTCGGTTTCTT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
ATTGATCGTACTCGTA	ref_5_negative	24	23	26	26	30	17	28	29	36	29
GCTGTCTGCCCGAATT	ref_5_negative	14	24	17	20	27	24	19	16	30	20
TCATTGATTAACGCAT	ref_5_negative	7	7	8	7	11	9	6	8	12	10
TTCCAGGGCGGTTTCG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CGTGCCTGCTACGATC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TCGAGGGCTCGAGTTG	ref_5_negative	15	21	15	15	17	24	17	12	24	17
TGAGCATTGTTTCTTA	ref_5_negative	23	36	18	21	28	25	47	29	36	33
GGCGAGAGCGACCGGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
ATCCGAGTGAGATCAA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TTGAAATCGTTGACCC	ref_5_negative	66	75	62	70	78	59	82	58	86	51
TACTTTGTACATAGAC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TACCGGGCCCTATTTG	ref_5_negative	16	29	21	25	20	24	27	30	37	23
TTTCATTGCCTTCTGT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GACGTCAATCGTAAAG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CTTACGTTTTGTCGTG	ref_5_negative	7	18	9	9	12	18	7	8	12	4
GCAGTCATCTTCCTTT	ref_5_negative	24	37	48	41	40	32	34	30	19	17
GTACGCTTACTCTCCG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TCAGCAGCGTCGCAAC	ref_5_negative	140	255	179	180	219	139	232	144	236	132
GCTGTTCGTCAGCGAA	ref_5_negative	42	47	41	46	51	41	62	28	45	37
CGCCGTGTACTTTCTG	ref_5_negative	0	7	7	6	12	4	8	6	7	6
TTATGCGTCATCCCGT	ref_5_negative	28	47	52	46	53	27	40	37	53	39
TTAGTATTCACTCCTC	ref_5_negative	9	37	8	10	35	8	38	11	32	4
ATGAAGTGAAGTATTA	ref_5_negative	72	119	94	96	100	75	104	57	100	67
TTAAGACTATTTGGCC	ref_5_negative	11	8	10	11	7	7	15	10	13	3
ATCAGTTATTTGAAAG	ref_5_negative	35	48	41	42	56	35	51	34	54	22
GTTAAGGGCATCAACG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GAGCTGCACGCTCTGG	ref_5_negative	0	0	0	0	0	0	0	0	0	0
CTGGTAATTTTTCCAT	ref_5_negative	9	10	9	17	10	5	13	15	12	9
TGCCTATCAGTCTCAG	ref_5_negative	72	80	68	64	96	61	97	74	88	64
TTACCCCTTTGCTGGA	ref_5_negative	31	37	47	44	39	29	44	28	48	27
TGCTATGCGAATGAGC	ref_5_negative	23	35	32	19	23	20	24	16	27	17
CCTTAGCCCGTCTACT	ref_5_negative	6	21	6	7	19	9	22	7	20	3
CGTGTTTTTGTACTTC	ref_5_negative	8	9	13	3	7	7	13	11	14	8
AAGCCTTCCTTATAGC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GTAGGGTTCCGGTCTT	ref_5_negative	3	4	2	6	5	2	4	5	0	2
TACCCTGTATCCCAGT	ref_5_negative	19	18	11	21	15	18	19	11	19	26
CCTTAAACCCCAGTTC	ref_5_negative	7	20	9	7	9	10	22	5	20	4
CGGAAAATCCTCGAGG	ref_5_negative	2	3	6	3	5	7	7	3	4	2
CCCATAATCTAGCATC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
GAGTGCACGGAAGGGA	ref_5_negative	50	37	39	37	29	43	39	52	45	31
TTAGTGACTGGTTTGC	ref_5_negative	38	60	35	39	61	21	75	33	81	30
ACCCCTTGGAGTGCCT	ref_5_negative	12	11	10	12	16	8	13	9	10	9
TGTCTAGCCACTTTCT	ref_5_negative	30	38	32	38	38	27	56	20	46	29
TGCGGCTCTGTCTTAA	ref_5_negative	108	134	108	103	131	92	148	106	151	100
GATTGCGGGCAGTTGC	ref_5_negative	11	12	10	8	12	6	7	9	2	6
TCTTATTGGTACTCAT	ref_5_negative	32	75	44	55	51	40	81	40	57	32
GACTGTCATTGCCCAG	ref_5_negative	11	18	17	15	32	16	12	17	27	12
CCTATTGGGGAATGCT	ref_5_negative	1	1	2	1	2	1	6	1	2	4
TTTTCCATTAATAGGC	ref_5_negative	42	35	42	38	31	31	43	22	39	33
CTATTGTTTTACGGGT	ref_5_negative	81	95	85	57	87	69	79	64	99	54
CATCAGTTCGCTGTTT	ref_5_negative	25	52	42	19	54	19	53	21	49	32
ATCCGCTGACCTCCAC	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TATGATCTGCCTTTCT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
AATTTACGGTTTGTTC	ref_5_negative	26	29	42	36	26	31	33	29	27	26
GGTTGGGCTAGTTATA	ref_5_negative	4	6	3	6	6	4	6	7	6	2
GTCCTGTGAGACGGTT	ref_5_negative	15	14	9	9	21	14	7	8	6	6
ATCCCCTCCCTTCGAT	ref_5_negative	72	93	71	59	97	62	97	75	92	58
AACCATCTGTGGTTAA	ref_5_negative	29	39	33	28	53	17	50	25	41	22
GAATCATCTCATCTCA	ref_5_negative	18	26	22	25	25	22	18	15	22	20
AGGATGCGATCTTCTT	ref_5_negative	0	0	0	0	0	0	0	0	0	0
TGTCTTGTCCATCGTA	ref_5_negative	0	0	0	0	0	0	0	0	0	0
AGTAATCTTTTTGCTA	ref_5_negative	4	5	5	2	3	3	6	2	6	5
TAGATAAACGTTTTAT	ref_5_negative	16	20	17	19	13	22	13	13	15	21
CCCCGAAAGCTAAATT	ref_5_negative	50	67	58	43	58	31	64	30	69	25
TTCCGAGTGAGATCAA	ref_5_negative	90	167	151	104	154	100	181	104	192	121
TTGCCAAGTTTTAGCC	ref_5_negative	30	51	40	30	41	37	60	42	51	27
CAGGGAGAGCAATTAC	ref_5_negative	20	44	34	21	34	28	33	28	31	27
TCGCTGGATATAATCT	alt_5951_new	0	0	0	0	0	0	0	0	0	0
ATTTGGGTACTGATGA	alt_5951_new	10	35	22	21	36	16	27	21	38	12
GTGATATTCGTACACG	alt_5951_new	4	5	4	2	9	5	6	3	9	7
TCGAGAGTTTCAGTGT	alt_5951_new	24	53	22	21	44	12	42	30	68	25
TAAGAATACTGTGGAT	alt_5951_new	39	99	66	52	101	51	105	51	101	35
TTTGTACGCTTTTTCT	alt_5951_new	40	53	52	38	65	35	54	44	67	30
TCTTTTCAAGGCCTAT	ref_5951_new	45	85	61	51	105	49	102	59	127	48
AAGCAAATACTTTATT	alt_5951_new	33	33	35	40	53	20	48	16	57	23
GATGGACCGCTCAGTC	alt_5951_new	22	62	31	34	66	36	69	27	51	23
ACCTCTTCCTCGAAGA	alt_5951_new	15	26	20	15	29	12	28	18	42	15
CAAGCTATCAGAAAGG	alt_5951_new	7	15	9	9	12	7	16	11	10	13
GGACTTACCGGATTCA	alt_5951_new	10	191	18	19	210	13	214	19	207	13
CGTTCCAAGTCACGGT	alt_5951_new	16	15	6	4	13	4	16	5	11	3
ATCGCGTGTTATGATC	alt_5951_new	40	47	42	38	66	35	67	26	66	21
TTTACTGTGTGGACAG	alt_5951_new	17	34	23	13	38	18	46	18	27	20
GAATTTTATAGGTATT	alt_5951_new	18	30	21	15	37	20	38	12	37	13
GCTTCTGTACGTATCA	alt_5951_new	17	19	12	12	20	14	19	8	15	19
CGCTACATCCATAATA	alt_5951_new	29	36	27	20	52	26	48	31	51	16
ACATGGCGACGTCCCT	alt_5951_new	0	0	0	0	0	0	0	0	0	0
CCAGCTCCTATCATTG	alt_5951_new	0	51	4	7	46	7	41	3	36	4
GCTCCATTGTATGTAG	alt_5951_new	39	88	41	36	78	33	79	35	76	29
TGCGTGCAATTAGCCT	alt_5951_new	17	21	19	7	17	7	18	7	30	10
CACTTTAACGAAGACC	alt_5951_new	87	118	104	105	110	100	129	83	113	78
GGGATATTGAAGGTGC	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TGGTAGTGGGCATCTA	alt_5951_new	0	0	0	0	0	0	0	0	0	0
CCGACCCCGGTACCAC	alt_5951_new	0	0	0	0	0	0	0	0	0	0
GGGAAGCGGTCCATAC	alt_5951_new	16	12	13	22	13	18	19	10	16	15
TGGTGGTCTACAATCC	alt_5951_new	0	0	0	0	0	0	0	0	0	0
ACTAGCTTAGGCGTCA	alt_5951_new	1	2	1	2	6	1	5	3	9	1
GGCATACTCCCAATTA	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TTACAGAGTCCCTCGC	alt_5951_new	42	77	34	35	74	30	79	30	79	35
CACCTTACCTCTTAAA	alt_5951_new	0	20	3	1	34	6	30	5	16	1
TCTACCGTTCCTTCAG	alt_5951_new	8	23	20	20	46	20	26	8	43	9
GCAGTGGACTTACGGG	alt_5951_new	13	20	7	15	27	4	23	15	30	17
CTTATGAGCACCGTAT	alt_5951_new	23	59	33	37	47	32	59	35	52	19
AGAGTGTCGATAAGGT	alt_5951_new	0	0	0	0	0	0	0	0	0	0
ATCGTTTGTTATATTC	alt_5951_new	23	26	26	22	25	21	27	17	23	16
CCCCGAGCTTGCGGAC	alt_5951_new	45	86	60	58	72	55	81	43	100	64
GGCGTACGAGCATCAG	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TGCTTAGTCCTGTAAT	ref_5951_new	74	146	90	76	153	76	150	65	149	82
TAGCAACCTTATTTAC	alt_5951_new	40	87	46	45	96	32	99	29	106	26
CTATCCGCGTGGCAGG	alt_5951_new	60	106	69	64	129	69	90	79	111	53
GACCAGTTATCTGAGG	alt_5951_new	9	24	18	20	29	13	41	11	44	20
GTACTTTTAGGTTAGC	alt_5951_new	0	0	0	0	0	0	0	0	0	0
ACCTGTACATCCTTGA	alt_5951_new	14	21	20	5	32	9	27	12	25	4
CTCGGTGCCGGTCTAC	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TGGCGCGCAGACACGC	alt_5951_new	9	9	13	10	15	7	14	5	12	14
TTGCAGGTTCAGTTAA	ref_5951_new	115	225	133	115	210	148	252	111	273	126
AGCGGTTTCGACCGCA	alt_5951_new	112	188	115	97	203	105	224	86	211	107
CGTGACAGACTCAGCT	alt_5951_new	2	4	2	1	4	1	5	0	1	2
CCGGACCTCAAGACGG	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TTTGTCGTGGTCCAAG	alt_5951_new	32	66	53	17	56	26	65	29	86	27
AGCGGTTTCGCCCGCA	alt_5951_new	0	0	0	0	0	0	0	0	0	0
CCATAATTTTAGTCAC	alt_5951_new	4	20	3	5	21	2	5	6	18	9
GCTTTTTTATCCTCCA	alt_5951_new	12	14	9	6	14	10	14	18	12	3
CAGCGTACATGAGAAC	alt_5951_new	0	0	0	0	0	1	3	3	1	0
TGTCGCATTCAGCACG	alt_5951_new	33	58	51	36	85	35	58	31	78	43
GTAGTAGGGAGAAATT	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TTTGAAGGTCGTGACG	alt_5951_new	0	0	0	0	0	0	0	0	0	0
CTATTACTAAAGATTT	alt_5951_new	2	1	0	0	3	3	8	3	5	3
TGTCCTGGGCAAGACA	alt_5951_new	0	0	0	0	0	0	0	0	0	0
GCTTTTTTATCGGCGC	alt_5951_new	15	29	27	19	45	15	31	20	41	15
TTTAGATGCTTGTCAA	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TAAGTGCAGTCGGTTT	alt_5951_new	4	10	8	6	8	5	10	7	9	4
TACACTTATGCCTCTC	alt_5951_new	35	76	39	40	72	31	91	27	84	33
TAGTGAGTACGTATTA	alt_5951_new	13	19	8	9	15	13	17	14	26	11
ATGTATGGGCACCGTA	alt_5951_new	32	77	39	30	61	34	75	38	76	33
TTTCTTCGAAAGTCCT	alt_5951_new	12	26	12	6	11	7	15	5	18	12
GAAAGTAACACGTTAC	alt_5951_new	35	57	37	29	57	30	44	31	68	31
TTCGGAACCGCAAGAA	alt_5951_new	61	129	86	64	118	64	112	71	127	62
CTATCAAACTAGGGGG	alt_5951_new	0	0	0	0	0	0	0	0	0	0
GTGTATGATAGTTTTG	alt_5951_new	0	0	0	0	0	0	0	0	0	0
CGCATTAAGCCTGGTC	alt_5951_new	0	0	0	0	0	0	0	0	0	0
TTAACCTTCGGAGGGC	ref_1284_upstream	34	29	43	51	36	38	46	45	56	45
AAAGCCCTACACCTGT	ref_1284_upstream	17	28	26	22	23	25	18	15	19	15
TGGTGTTTTCTCGGTT	ref_1284_upstream	69	77	96	75	75	71	78	80	80	58
TAAAGATATCAATTTG	ref_1284_upstream	86	58	96	84	45	78	85	56	76	55
ACGACGTGTCCGGATC	ref_1284_upstream	22	24	47	43	28	16	23	14	38	30
TGGGTAGACGTCTGCC	ref_1284_upstream	35	39	37	36	38	31	23	27	44	33
GTGTCGTGACGTTTAT	ref_1284_upstream	5	7	4	9	7	2	9	7	13	12
TTACCGTGTGCCCGCC	ref_1284_upstream	54	88	81	70	65	64	60	67	64	62
TGCCCATCTGCTTTCG	ref_1284_upstream	17	30	29	16	19	24	21	20	35	17
CCACAGATGGTACTTC	ref_1284_upstream	5	17	13	4	11	6	16	6	17	6
CTGGGAGAGGGTTGTT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGAATTAAAACTA	ref_1284_upstream	132	127	165	130	115	131	125	96	135	102
AACACCAAATGTTACG	ref_1284_upstream	99	91	110	93	91	92	124	112	110	73
TATGCCTAACCCCCCC	ref_1284_upstream	9	9	14	16	7	5	10	14	12	15
CTGGCCTTCAGGTAGC	ref_1284_upstream	3	1	2	1	3	2	4	2	0	3
ACCCGCGCCTTACGCA	ref_1284_upstream	24	26	41	42	22	19	27	21	23	40
TAAGCCGCACATATAG	ref_1284_upstream	30	42	47	29	43	40	51	41	32	35
GGTTTTTCCGGTCTCT	ref_1284_upstream	9	5	15	5	7	14	12	3	9	6
CCGCACTGCGACAGCG	ref_1284_upstream	48	38	47	41	42	44	42	34	65	44
TGTTTTTTGGGAGCTG	ref_1284_upstream	33	45	51	51	43	27	36	34	38	34
TTCCGTAACACTAGGC	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TGCATCTAGTACGAAT	ref_1284_upstream	30	41	60	37	84	33	53	39	54	47
GCCTTATTTGATTTGT	ref_1284_upstream	39	52	44	45	56	53	46	38	58	34
TTCAACGATCTCCTTG	ref_1284_upstream	13	22	26	14	13	26	26	16	23	10
AGGTGATCCCTTAGTT	ref_1284_upstream	2	1	2	3	1	7	6	8	4	0
GATGATGTAATCTCAT	ref_1284_upstream	61	47	58	80	34	62	48	53	42	62
CACCCTTTATTTGTTT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TACCGTTTCGTCTCCT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TAGATTTTGTGTCTAG	ref_1284_upstream	15	9	9	13	15	5	18	9	17	7
AAGGCTGCTCCCGGAA	ref_1284_upstream	50	41	58	43	48	41	55	35	52	33
CATGGTTGGTTAGCCC	ref_1284_upstream	57	65	93	64	70	64	75	56	74	43
ATCTCGAAGGGTAGAT	ref_1284_upstream	117	137	161	152	150	129	125	147	167	121
CACATGTGCAAGGTGG	ref_1284_upstream	2	2	1	1	4	0	4	1	1	0
TCATTTGCGTCGTGTG	ref_1284_upstream	5	9	4	6	3	2	3	4	5	5
TTCGGGAGTTCCCCAT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGTCCCTCCTATC	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCGCATAGTGTG	ref_1284_upstream	97	114	115	87	129	97	116	71	129	80
TGGCTGCCAGAAATCA	ref_1284_upstream	26	20	24	21	23	11	35	15	30	18
TCCGGGCTTCAGGGTA	ref_1284_upstream	5	11	12	8	18	5	16	8	12	15
CGGCCCCGTCGTGCGA	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
AGTATGCTTTTGATGC	ref_1284_upstream	6	4	6	10	12	5	13	5	9	7
GCTTTCAGGGATTCTG	ref_1284_upstream	21	20	23	22	15	14	15	16	20	7
CGTGCATTCACGTTCT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCGTTGGTCATCG	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGTTGAATTATGC	ref_1284_upstream	56	71	56	45	59	51	65	49	63	44
CCTATCCGTTTTATCT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TTTAACCGCGACATTT	ref_1284_upstream	80	65	86	51	64	63	61	51	64	46
TAGTCGTATTCATGCC	ref_1284_upstream	13	9	9	17	10	16	16	12	16	5
TACCATTGATATTCTT	ref_1284_upstream	51	72	71	71	78	49	66	50	64	49
ATAATGATGTGTTCTA	ref_1284_upstream	26	31	46	34	37	27	39	30	27	22
GACTTCCTTTTGGTAT	ref_1284_upstream	111	86	103	91	112	78	106	85	133	96
CCGTTTTGATTGCTCA	ref_1284_upstream	58	46	58	53	46	58	79	52	70	64
GATTATGTTATCCTAA	ref_1284_upstream	21	29	23	24	31	30	41	15	37	17
ACAATAATTCATCCGT	ref_1284_upstream	7	7	4	3	5	4	8	3	3	7
ACAATGCCTAATTATC	ref_1284_upstream	15	17	16	17	16	16	14	8	17	18
ACGCTAACCTTGTACC	ref_1284_upstream	14	18	14	8	21	7	6	13	11	16
GACTTAGGCATAACCG	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TATTCTTAGGGCACAA	ref_1284_upstream	37	28	37	35	33	25	30	38	39	26
TTCGCGCTCCCGTGTC	ref_1284_upstream	116	200	166	135	222	144	235	165	219	129
CTTACTGGTTCCCGGC	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTGTTCCTAGTAG	ref_1284_upstream	28	35	22	29	31	30	23	23	33	13
CGATAAGCGTCCTCTT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
GATGGCCTCCTAGCAT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TTTATTGTACATCTAT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGCCCACTATTTA	ref_1284_upstream	5	6	9	7	2	3	5	5	1	2
GGTGAGTTCGAGTCCC	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TAACTTGGATTTCCTC	ref_1284_upstream	21	29	30	24	20	17	21	33	27	35
CTTATACACTCAGCTG	ref_1284_upstream	6	0	1	2	1	4	3	0	7	0
ATGTTATTGGGACATG	ref_1284_upstream	20	22	33	28	21	37	35	26	28	35
ATGGTCGCTAAGTTTG	ref_1284_upstream	10	11	14	12	17	12	8	12	13	14
TCAGGTTGTGTGATTA	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
GCTATTTCAAGCTAAT	ref_1284_upstream	33	28	21	43	35	32	24	25	25	24
AAATCCTACGCTTTGT	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGAGCTCCCTCTA	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
GGCCCAATAATTTTTA	ref_1284_upstream	0	0	0	0	0	0	0	0	0	0
TATCCGGCTCCGTGCC	ref_1284_upstream	132	136	145	132	153	100	160	107	160	101
ATATGTTGAGAAGGAA	ref_1284_upstream	9	5	11	6	5	4	3	3	3	3
TATAGGATTCGACATT	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
GTAAAGTGGTCGTTCG	ref_1284_upstream	52	80	72	53	84	63	72	64	74	61
AAAACGGCTCAGTGCT	ref_1284_upstream	92	127	126	89	148	103	128	102	139	90
AAGGATCCGACTATTG	alt_1903_reverse	3	2	2	1	4	1	9	2	4	0
TAAGCGGGGACTCATC	alt_1903_reverse	23	12	31	19	31	33	27	20	32	23
GGTAGGGGTCCTGGTC	alt_1903_reverse	72	60	94	73	61	73	80	68	68	45
CGGCGCAAGGGCAGTT	alt_1903_reverse	13	8	8	11	8	9	5	5	6	12
TCTCAATCGCCGGGCG	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
GACGCCTTGAGACTAG	alt_1903_reverse	37	28	33	30	49	25	41	27	30	34
GAATGTTGCGTGGCTA	alt_1903_reverse	88	87	107	95	87	94	78	47	107	65
TGTTTTGCCGGTACCC	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGATCATAAATT	alt_1903_reverse	4	10	4	8	20	0	9	3	11	2
TGTGGCCTTACCTCTA	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTCGTTCAGCTCA	alt_1903_reverse	4	14	4	6	4	7	2	7	10	9
TTTTCTGAACCCCAGC	alt_1903_reverse	61	77	76	92	69	50	79	68	57	64
AGTGGCACTCTGGCCC	alt_1903_reverse	7	4	21	8	7	9	9	5	15	6
CCATACCCCCGGCTCT	alt_1903_reverse	36	38	51	46	63	33	43	34	50	27
TTTTTTGGTGTATCTC	alt_1903_reverse	48	39	66	45	54	38	55	38	59	35
GCCTTCCAATGCGCTT	alt_1903_reverse	20	19	26	25	30	34	23	17	20	22
GTCGTAATGCCTCGCC	alt_1903_reverse	18	15	21	32	14	16	15	17	23	16
GGCGAATACGAGAGTT	alt_1903_reverse	92	91	83	87	90	82	93	87	82	65
GGGTTCTTCTTTCTGT	alt_1903_reverse	135	114	137	109	112	102	126	117	111	120
TGGCAGTCCGAAATTG	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCAAAAGTCTACT	alt_1903_reverse	90	80	92	82	79	87	67	59	96	65
TATTGCCCCGTCGCTT	alt_1903_reverse	65	150	75	70	155	71	191	48	170	52
TATTTTTGATCTTGTT	alt_1903_reverse	25	17	27	16	20	21	15	22	18	16
GTACCAGAAGGGTTTG	alt_1903_reverse	192	192	195	191	176	192	220	175	220	147
CGGGTTCCCCTTCGCC	alt_1903_reverse	27	34	29	19	27	19	32	21	31	20
TCTTCTACGAACCTCC	alt_1903_reverse	11	17	21	23	19	13	24	13	22	18
TTTATTCTACCTCCAC	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGAGCATCTTTCT	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
TACTCTAAGTTATCAT	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
GATACATCTTTGAGGC	alt_1903_reverse	16	19	13	12	15	10	20	21	24	16
CGATCTTTGCTCATCC	alt_1903_reverse	363	476	507	406	498	383	458	388	529	349
TGGTATACGCATTTTA	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
CGTCATCCGGTTCAGT	alt_1903_reverse	51	94	121	101	92	84	102	92	98	67
ACCGACATGCAAGCCA	ref_1903_reverse	37	38	66	47	35	43	47	42	36	43
ATTATGCCCTGAGTCC	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
TATTCGGATGGTACAA	alt_1903_reverse	64	57	84	68	82	62	61	58	84	66
CTGCGCTTGTAGTGGT	alt_1903_reverse	28	32	21	26	27	17	36	35	28	28
TTGCGCATTTCCACAT	alt_1903_reverse	102	94	121	105	109	101	98	114	108	87
CCCTAAACTGCACGCG	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
CCTCAATTTTTCCGTC	alt_1903_reverse	0	0	0	0	0	0	0	0	0	0
CAATTGTTATGTAGAG	alt_1903_reverse	16	12	17	14	12	18	12	7	15	17
AGTTTCGTGCTCTTTA	alt_1903_reverse	17	11	20	8	6	14	8	13	13	14
TGGCTCATTTTCCCTA	alt_1903_reverse	10	17	26	22	21	21	23	17	17	13
TGTTGGATTTCAACTC	alt_1903_reverse	6	1	6	8	14	7	8	18	10	6
CAAGTACATGCACGTG	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
AGTATTTTTGAATTCC	ref_929_fdr	96	20	106	97	23	92	21	87	11	77
TTTACGTAAGTATAGT	alt_929_fdr	43	16	60	47	14	44	18	43	10	42
TGGGAGAATCCCAGCG	ref_929_fdr	1449	176	1618	1517	199	1293	220	1338	233	1216
AGCTCGATCTATCTTC	ref_929_fdr	2100	350	2620	2349	334	2039	337	2095	371	1830
AGAAAGTACCTGCGTG	ref_929_fdr	109	17	112	126	23	106	14	106	12	107
TTCTCCGCACTTAGGA	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGACACAACTCTA	ref_929_fdr	2975	430	3557	3392	417	2749	471	2905	499	2571
CGGATCAATCCGTTAC	ref_929_fdr	192	29	215	199	17	198	41	184	27	198
TACTACTGCTATAAGT	ref_929_fdr	175	21	203	199	29	179	31	210	14	158
CCACCGTGACGGGACT	ref_929_fdr	611	68	703	619	58	491	58	534	87	477
TTGGGGCCTTGGGGTA	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
CGAACGCCTGAGTAAC	ref_929_fdr	149	25	223	201	19	165	35	159	33	145
ACTTCCGTCGATCCTA	ref_929_fdr	196	37	267	219	42	175	38	189	42	172
TCGTTTATTTACAAAT	ref_929_fdr	898	158	1114	1006	140	946	182	892	161	741
TAGCTTTGTCCTTTTC	ref_929_fdr	245	43	337	341	32	254	31	259	37	200
ATGTTGCCGACAAATT	ref_929_fdr	1841	229	2315	1985	193	1721	230	1791	248	1548
AAGGATTCGATCCCCC	ref_929_fdr	400	39	496	414	60	392	54	378	60	312
TCATCGGCTCCATTGG	ref_929_fdr	15	1	37	21	5	29	7	24	1	26
ATTTGTCTTGATTTCT	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGGTTGTCTAGGG	ref_929_fdr	158	24	135	133	19	112	13	125	20	100
TTGCCATTTGGCAGGA	ref_929_fdr	163	17	187	153	22	161	24	164	25	133
TCGCTACGCTCTATTT	ref_929_fdr	0	0	0	1	0	0	0	0	0	0
GTTATCTTCACCATTG	ref_929_fdr	119	23	124	116	27	88	15	118	17	85
CAACACGCTAGACACA	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCCGTATTTGTAG	ref_929_fdr	94	15	125	124	19	97	13	119	13	74
GTACGGAAATCCCTCT	ref_929_fdr	13	20	20	21	28	21	23	22	24	12
GTGCATACTGGGCTCT	ref_929_fdr	167	23	253	165	33	165	30	137	38	164
AGGAATCCATCTATTA	ref_929_fdr	308	43	437	431	53	347	53	348	47	305
GCGGATGCGCCGTACT	ref_929_fdr	338	45	432	431	60	360	70	402	38	345
GTTGATTGCCGCTTCG	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
TTGATTTTTGTAGGCC	ref_929_fdr	198	36	289	227	26	209	33	239	30	168
TATGATTAATTTGTTG	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGCCATCAGGTAG	ref_929_fdr	254	56	325	299	55	233	55	248	47	217
GCGCATTCTCCCTCTG	ref_929_fdr	183	21	236	193	32	162	31	202	28	164
AACCTGTTAAGCGTCT	ref_929_fdr	481	88	569	482	94	452	95	467	85	371
AGTGTGTCTACGTGAG	ref_929_fdr	0	0	0	0	0	0	0	1	0	0
TTATTAATCCCTACCC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
CCACGAGTTACTCTTG	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCCTGCCTGTTC	ref_929_fdr	138	18	180	153	31	145	23	125	27	119
TACTACTTGCTTCGCA	ref_929_fdr	295	47	333	333	52	288	48	240	44	256
GTTGCAGGCTCCCGTG	ref_929_fdr	541	69	637	607	57	561	62	530	77	482
TCGGTAACTAATCCCC	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCGAGGTAAATAA	ref_929_fdr	195	28	236	187	23	187	28	248	20	182
TCTCAGGTGCCCAGAG	ref_929_fdr	227	29	281	258	43	204	34	238	47	226
TTTTTTATATCCTCTT	ref_929_fdr	817	118	917	811	97	795	125	806	143	685
GTAAGCACCTCCGGAC	ref_929_fdr	93	24	101	102	18	81	11	103	17	87
TTAGTAGTCCACATTC	ref_929_fdr	482	70	564	472	88	414	111	437	92	391
CACACCGTCACTCTTG	ref_929_fdr	103	24	146	133	28	122	13	116	30	98
GGGGTCGGCGCCAGTC	ref_929_fdr	265	41	348	308	35	263	38	254	35	244
GATTCCGTTCCGATGA	ref_929_fdr	419	53	434	384	56	285	75	334	57	318
AACTATAGTTGTTTCT	ref_929_fdr	220	34	295	308	42	229	35	227	37	240
TTAATTATAAGGAGGT	ref_929_fdr	128	15	200	137	17	124	19	116	22	87
TATTCACCGGCGTATC	ref_929_fdr	150	21	193	165	12	133	27	152	22	136
TTTAGAGTTCTGAGTA	ref_929_fdr	36	11	91	64	9	57	6	49	7	36
AGAGGGTTTTAATAAC	ref_929_fdr	86	16	95	74	19	81	9	78	13	79
GTTTCGTTCGTTCGTC	alt_929_fdr	843	242	979	881	249	831	278	794	271	647
TCGCTAGCCGCATTGA	ref_929_fdr	61	6	66	79	13	61	6	69	9	46
ACCCTTAGTGCCTCTC	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
AAATCAGTATTTCAAT	ref_929_fdr	121	19	157	138	13	118	14	110	18	99
TGCTGCATTCATTGCA	ref_929_fdr	457	67	567	532	75	451	82	439	60	404
GAGTAGTCACCCCCAG	ref_929_fdr	152	31	143	132	24	121	26	96	26	109
TCTTGTGGCAGTGTTA	ref_929_fdr	383	62	516	428	61	321	63	375	62	352
TGTAGGTGGGAGCATC	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
CATAGGTTCATCATTT	ref_929_fdr	606	95	782	715	116	610	133	653	123	581
TGTACGGCAGCGAAAT	alt_929_fdr	589	118	714	660	87	586	95	626	88	563
TCTATCCTCGGTTACT	ref_929_fdr	166	21	164	136	25	132	22	123	21	141
TCCCTCGCGTTTTTAT	ref_929_fdr	26	0	20	24	2	19	3	21	5	18
ATTCCTGATGCTTTCT	alt_929_fdr	70	9	99	85	6	86	10	86	4	69
CTGCTTCCGTGATGCG	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTAGGGGAACTTG	ref_929_fdr	264	30	289	297	45	246	29	268	37	231
GCTTAGATCCCTTTTC	ref_929_fdr	179	27	231	181	23	182	30	177	31	162
TTAGTGTTACGGTCCC	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCGATGTGGGCTA	ref_929_fdr	64	10	122	90	13	84	23	86	11	86
AGCAGTGCATCTTTAC	ref_929_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTAGGTTTACTTG	ref_929_fdr	843	130	1117	972	132	893	121	942	148	790
GTAGCCGGATCACTTA	ref_790_reverse	74	96	73	71	95	74	103	63	94	69
GCCACGGTAGCAGACT	ref_790_reverse	7	11	9	8	8	7	6	8	8	6
GCGCGTTTTAAGCTCC	ref_790_reverse	38	62	33	31	49	34	78	23	69	29
GTCTTAAAAATGGGTA	ref_790_reverse	55	66	68	66	86	48	98	56	59	52
GACAGAAAGTTCTACA	ref_790_reverse	20	33	24	22	37	22	30	16	32	16
CCGTTCCCTGAGGACC	ref_790_reverse	13	30	15	11	32	8	37	9	41	4
TTACGTGGTCCCTAGT	ref_790_reverse	25	36	39	22	42	25	45	17	43	22
AGGCATATCAGCGATT	ref_790_reverse	17	26	23	20	25	20	39	15	26	15
AGTCCGAAACACTATT	ref_790_reverse	18	31	18	15	31	18	26	10	37	15
ATAGCACAGGCCGAAT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
GACGGTAGATTAGTGG	ref_790_reverse	12	14	10	10	20	12	13	14	18	6
GCGATTTGCGAAGCCC	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
GTATTTCCTGGCATGG	ref_790_reverse	0	0	0	1	0	0	0	0	1	1
ACAAAAGGGTACAGGC	ref_790_reverse	147	209	152	97	222	140	214	117	207	141
TTTTCTCTCTATTATT	ref_790_reverse	51	54	80	66	46	54	54	39	43	40
ATGTCCGATATATTTT	ref_790_reverse	8	7	2	3	9	5	8	1	5	4
TCGATCTCATGATGAG	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTGTTTGTCCTCT	ref_790_reverse	41	34	43	44	54	44	38	43	50	35
ATCACCGCGGTCCGAG	ref_790_reverse	4	10	5	6	14	7	15	11	15	6
CCGATCGTGGAGTGGG	ref_790_reverse	127	234	181	148	274	129	253	136	296	122
CGTCCCGGTTTGTCTT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACTTGCCCGCGG	ref_790_reverse	23	68	27	13	64	15	70	16	80	22
ATAAAATTCATATCGC	ref_790_reverse	27	28	32	16	37	32	27	28	37	19
AATACTGTCATTCCAT	ref_790_reverse	15	25	21	12	29	15	34	22	42	19
TGGCGTTTATCGTCGG	ref_790_reverse	26	45	29	26	44	30	47	32	50	32
GAGTACCATGTCTATG	ref_790_reverse	9	8	7	0	5	3	1	4	3	1
TGTACGGTTGATTTCT	ref_790_reverse	19	30	32	33	33	23	51	19	33	17
TTTCTCAAAATATTGC	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
CGACCGTTCCTTTGTG	ref_790_reverse	52	67	45	38	59	52	47	45	49	34
ACTTGCGAACACTCTA	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCACTTCAATTGT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTGGAATCTGGCT	ref_790_reverse	21	29	25	17	38	14	34	16	28	18
GCTTATTTGCCTCCGG	ref_790_reverse	93	126	87	99	133	78	117	102	129	87
TGTATAGCTTATCTAA	ref_790_reverse	39	70	48	37	54	39	69	30	86	31
AGAACCCAATAAAATA	ref_790_reverse	30	44	45	35	60	28	49	28	43	34
AAGGCCCGAACCCGTA	ref_790_reverse	50	58	57	38	50	48	75	51	88	27
CGATCCACGTGGCTTG	ref_790_reverse	55	59	51	43	95	49	87	38	78	45
CTGGCCAAAGTTCACC	ref_790_reverse	6	9	7	2	12	4	11	5	12	2
TGGCTACAGCCATGAT	ref_790_reverse	24	25	33	21	50	24	36	23	32	22
TCGATATGCTACGATT	ref_790_reverse	55	66	59	49	94	51	96	43	98	53
TTCGTTGAGGTTTAGA	ref_790_reverse	27	33	32	11	33	29	32	20	34	19
CGAGATTACCCGAGCC	ref_790_reverse	22	59	48	28	38	23	37	29	46	29
TGTCGGGTAATGTCGT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
TATTCCTATTTCATAG	ref_790_reverse	45	74	57	43	64	42	70	36	71	41
AACTGGGTGTGCGATT	ref_790_reverse	57	109	68	53	98	67	126	59	108	46
TTGAGCCCTGGGAATT	ref_790_reverse	18	31	42	26	50	29	32	22	42	28
TTAATTGTCCATGATG	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTTTCTGCTTCAA	ref_790_reverse	6	3	4	2	3	2	5	2	0	0
CGGGTATACGGCTGGG	ref_790_reverse	33	73	41	34	74	43	57	33	70	23
TTGCCATTAGCAATTG	ref_790_reverse	21	36	21	20	28	23	36	15	28	22
ATTCAGACTGGTAGGA	ref_790_reverse	39	40	24	24	51	31	39	27	42	24
TGAAGGGCCATCGCTG	ref_790_reverse	41	71	55	55	100	48	91	42	83	45
CGGACCGATAGTATAT	ref_790_reverse	83	169	116	100	160	94	177	98	165	83
GTTCTCCTGCAACGGT	ref_790_reverse	7	7	6	8	12	7	14	7	10	4
AGGCCGACCGTTTAGT	ref_790_reverse	10	20	21	15	20	13	40	10	15	10
ATAAATGAGACACGTA	ref_790_reverse	1	9	8	7	10	6	4	8	8	5
TTTGGGTTAGCGTAAT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGGACCTGAAAGT	ref_790_reverse	20	35	17	29	48	30	42	29	32	31
ATGATTCGCAGACTTG	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTTTCAGTTAGCA	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
TTCATATCACTGCGGT	ref_790_reverse	24	11	37	11	17	30	13	24	16	29
TTTGTTTACTTATACT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCGAAATGTTTAT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
GACCCCTCTGAGCGGG	ref_790_reverse	0	0	1	3	2	2	3	0	3	2
TCCCGGTCTTACGTCA	ref_790_reverse	17	38	32	16	35	21	41	15	39	17
GATGCTTCTTATGGCC	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTCAGTAATCATG	ref_790_reverse	22	100	26	21	91	25	82	14	102	19
AGCCGAGGGCCTCTCG	ref_790_reverse	3	11	8	6	11	8	7	9	6	8
CCCTGCCGGTATGTCG	ref_790_reverse	7	14	15	6	20	8	11	7	20	8
TCAGCAGGTAAGTTTT	ref_790_reverse	45	56	42	42	56	45	52	31	51	22
GTAGCCCCTTTCCAAG	ref_790_reverse	5	6	6	8	10	6	4	4	7	3
ATCCATGTTTTATGGC	ref_790_reverse	8	11	13	7	18	16	22	14	27	14
CTTCCCCGAATCCTAC	ref_790_reverse	7	27	12	5	40	3	37	10	25	3
ACTGTCGCATTATAGT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
CTATCTTAGCAATTGG	ref_790_reverse	8	12	7	8	12	4	12	9	12	9
GTGGGCAGTATTGGGG	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
GAGAATCCGCACATAA	ref_790_reverse	64	75	70	54	81	49	88	38	97	60
CGTTTTGACTGCTCGA	ref_790_reverse	23	31	21	41	26	19	22	26	33	18
CCTTTGGTCGTAGGTC	ref_790_reverse	8	38	13	13	31	16	36	10	38	10
TTGCAATCTGACTCAA	ref_790_reverse	46	59	40	43	71	44	66	69	59	40
AGAGACTACCCTTATT	ref_790_reverse	51	85	58	32	72	36	87	42	72	50
TGTTGCGGTCCGTACC	ref_790_reverse	4	0	1	1	3	0	0	1	1	2
GACACAAACTACTTCG	ref_790_reverse	8	10	13	10	18	6	13	11	17	11
TCTTTCGCGGAACCTT	ref_790_reverse	39	66	52	51	100	43	77	38	68	39
TTAGCTGCCACTGTCC	ref_790_reverse	163	217	165	139	201	138	243	133	189	125
TCAATGCATTATCTAG	ref_790_reverse	55	72	45	51	74	54	85	62	87	42
TTAGACTATCCATAGC	ref_790_reverse	44	79	46	56	57	43	59	29	80	37
TCCGTAGTACGTTGTA	ref_790_reverse	0	3	0	0	2	0	3	0	0	0
TGTGATTCACGTCATA	ref_790_reverse	17	30	22	25	23	13	30	16	23	12
CTGCATTAAGTCTCTT	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
ACAATATTTTATTTCC	ref_790_reverse	43	86	61	58	66	56	72	52	70	38
CGCGCCAACGTCCCTA	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGGTATGCTCTGC	ref_790_reverse	6	6	7	7	9	5	12	8	14	6
AGCTCTGGCTACTCCA	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATAATGGGGATG	ref_790_reverse	13	22	18	11	29	23	36	19	27	19
GTGCGAATGGTCTCTT	ref_790_reverse	35	50	61	37	43	30	67	31	50	16
TTCGATCATACTGGTC	ref_790_reverse	35	51	23	22	45	30	36	34	44	26
GAGGCACACGTCCATG	ref_790_reverse	4	11	5	8	15	6	9	5	9	10
GCTTAGACTTTATCGC	ref_790_reverse	24	28	24	21	32	12	34	13	26	18
AATTGATTAAGCGGTA	ref_790_reverse	69	80	57	67	76	50	82	55	94	37
AGCAGCTTCTGCAGTG	ref_790_reverse	35	65	38	31	55	34	76	35	75	36
TGGACCCTTTGTCGTG	ref_790_reverse	17	33	38	22	32	23	30	22	33	23
ACAAATTATGCTGGGC	ref_790_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTCGTCTAAATTC	ref_790_reverse	25	24	32	32	40	25	51	20	41	46
GACCTCGTTATTCTGT	ref_790_reverse	46	52	53	40	48	52	37	39	57	44
TCTATGCCAGGCATCA	ref_790_reverse	29	49	33	38	64	33	47	23	49	37
GGGTTGCGTAGACCTC	ref_790_reverse	24	32	21	24	51	30	47	22	32	24
TGCCTCTGCAGTTCGA	ref_790_reverse	17	27	26	23	23	15	25	19	26	25
AGTGCGGTTTCGGGAA	alt_2027_upstream	117	93	159	146	93	129	86	131	106	122
TATCGGGTATTATGGC	alt_2027_upstream	41	27	51	38	18	41	25	43	25	34
CTTGTGAGCCCAGTGC	alt_2027_upstream	156	102	184	145	86	161	115	134	113	131
AGAAATTCCTTGCGTC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGCTGATTCCGCG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCATCAGAGCATT	alt_2027_upstream	32	24	49	35	20	36	20	29	24	27
GTGAATGATACAAAAG	alt_2027_upstream	284	162	375	332	161	278	189	307	213	274
CCTAACAGTCTTATGA	alt_2027_upstream	17	21	29	30	38	13	23	16	26	20
GCCCCTGCCGGATAAG	alt_2027_upstream	18	11	32	20	15	19	15	19	13	15
CCAATATCACATTATG	alt_2027_upstream	52	44	60	65	29	54	40	42	34	56
ATATGGCTCTCCCCTT	alt_2027_upstream	39	34	35	44	41	31	36	27	48	36
AGTATGGGGGCTCTGT	alt_2027_upstream	91	39	76	57	36	52	38	67	38	61
CCGTATTGCCGTGGGA	alt_2027_upstream	23	17	33	29	22	20	18	24	15	21
ATTCCGTTGGTGGTAA	alt_2027_upstream	25	9	31	13	13	8	14	21	13	13
CCGATTTACGTTCTAG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
TTTAATTCTTAGAGAA	alt_2027_upstream	216	132	267	187	134	209	136	195	140	164
TTCGAGGTGCTGCAAG	alt_2027_upstream	67	63	77	61	41	65	49	58	62	76
TTGAAAGAGCTAAGGG	alt_2027_upstream	60	42	64	79	37	63	57	68	44	70
GTACGCTGTGCCGCAC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTAGCGGGGATGG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCTATCGCGTGTA	alt_2027_upstream	14	8	24	6	7	9	10	13	12	8
AAAAATGGGGTACGAA	alt_2027_upstream	28	11	48	41	18	38	13	26	23	38
CATCCACTGACGTAAT	alt_2027_upstream	62	25	60	56	33	61	23	44	45	50
CATGGCCTGACCTTGG	alt_2027_upstream	69	24	83	74	35	88	46	82	44	59
TGCACTTAATTTTCTC	alt_2027_upstream	113	74	127	125	77	117	74	116	82	114
GGGGATTTTATTCAAG	alt_2027_upstream	48	38	70	44	31	44	36	50	39	54
TCCACCTTCACACACT	alt_2027_upstream	66	46	66	57	53	55	74	62	51	44
GCATATTTTTGTACGG	alt_2027_upstream	31	21	47	39	12	23	22	32	29	29
ACGCCTTAGGCATAAA	alt_2027_upstream	23	12	31	28	22	25	20	29	18	28
TAATAGCAATTTTCTT	alt_2027_upstream	137	102	184	142	89	161	80	120	104	132
ATCACTGTACGCCGGT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
TGGCACAAAGCCATGG	alt_2027_upstream	23	16	32	30	16	22	10	18	10	21
TCGCAGTCTGCACTTT	alt_2027_upstream	35	27	47	41	35	39	48	42	32	46
TTACATCAAGCCCATG	alt_2027_upstream	47	21	50	54	23	51	29	32	39	43
TCCATGAGCGATGTCG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
CCAGATCCCTCGCGAG	alt_2027_upstream	20	9	22	10	7	12	11	15	6	11
GTTGTTCACAATTTTG	alt_2027_upstream	36	14	31	39	33	26	18	33	23	26
TAGGCCGGTACCTCTG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTACAAGATAGCC	alt_2027_upstream	64	31	56	55	29	40	44	51	29	39
TATTACGATTCTAAAT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTTATCAATAGGG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
CGAATTCACGTGCAAT	alt_2027_upstream	12	16	13	15	9	17	7	5	6	11
TTATTCATGGCTTTAA	alt_2027_upstream	0	1	3	3	2	2	1	1	0	4
TATCAGTTCTAACACC	alt_2027_upstream	4	5	1	3	1	1	3	2	2	3
TGTTTTGGAAATTTAT	alt_2027_upstream	19	5	17	13	17	17	15	18	11	14
CTCCCTTACACTCAGC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCGCCTTCGAGTG	alt_2027_upstream	20	6	10	11	5	15	7	9	10	10
ACGAGTTTTTTTGTAA	alt_2027_upstream	20	13	7	9	10	14	13	9	11	11
CAGATACTATTACGCA	alt_2027_upstream	123	116	216	174	136	133	128	145	146	167
AAATGTCGTCGATCGA	alt_2027_upstream	78	29	84	71	30	65	22	51	23	45
CCACAACCTCGGACTT	alt_2027_upstream	57	22	68	52	34	49	22	53	27	50
CACGGAGACTAATCAT	alt_2027_upstream	42	34	79	71	36	64	42	49	45	64
CGACGGCAACTTCACA	ref_2027_upstream	149	77	149	111	64	86	95	114	57	110
GAAGCAGTCCTAGTTG	alt_2027_upstream	116	92	128	123	82	108	82	98	84	89
TTTTATTCCTCACATG	alt_2027_upstream	13	11	17	14	8	17	14	14	15	10
CGGCAGGGCTGGGCTC	alt_2027_upstream	81	46	89	76	55	75	61	73	44	70
TTTCTGCTGCAACACT	alt_2027_upstream	35	25	42	41	22	32	19	28	18	28
CGAAAGAGGCTGTATG	alt_2027_upstream	60	29	55	46	31	43	46	49	33	35
CGTTTTACTGGATCCA	alt_2027_upstream	86	45	84	77	52	67	62	78	45	70
ACACATATCCACATCT	alt_2027_upstream	37	30	39	61	19	54	32	34	27	50
TGGTCCACAGTCGGAC	alt_2027_upstream	20	7	14	23	15	15	10	19	6	22
TACCCTCCTTCTCCCG	alt_2027_upstream	7	13	9	11	4	11	14	9	11	13
GGATAATCTGGATTGT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGACTGGGTGCCG	alt_2027_upstream	46	26	50	43	31	61	41	48	31	56
AGGGGCATTATTGAGT	alt_2027_upstream	97	70	142	111	84	106	70	98	78	86
GCGCCACGTTACCCTA	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
AGATCAAACCAGGCGT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGATTCTTATCGT	alt_2027_upstream	100	48	128	81	84	99	59	96	70	110
CTCAATCCGACAGCAG	alt_2027_upstream	252	137	299	234	128	173	147	229	136	199
CATCTTTGCTGAGAGT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
AATTTCCTCGGTTTTG	alt_2027_upstream	109	70	124	81	71	70	74	88	65	80
CTAACGTGATATAGCA	alt_2027_upstream	112	78	136	136	72	108	106	108	89	113
GCGGTCACATTTTTAC	alt_2027_upstream	34	17	35	37	16	16	21	26	16	28
ACGCACCAGAGTCAGC	alt_2027_upstream	149	84	170	150	91	139	106	138	87	128
CTAGTGGTGTGTGCTT	alt_2027_upstream	6	9	10	7	4	5	10	6	6	6
TTTCCTTTCTACGTTG	alt_2027_upstream	176	131	205	195	119	164	140	181	107	168
AGTTAGAGTTCTTCAG	alt_2027_upstream	109	73	119	116	69	129	82	106	67	101
TATAATGCATAACATC	alt_2027_upstream	88	50	114	100	60	98	61	115	46	96
TTATGATTTATTATTG	ref_2027_upstream	68	38	75	64	56	60	44	45	48	65
GTTCGGGTCTAGGATG	alt_2027_upstream	28	7	25	25	21	27	20	14	18	21
CGTTTATGGCAGCCAA	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
ACTTAAAAATCCCAGT	alt_2027_upstream	23	18	44	47	24	34	25	21	16	38
ACTCATTATACGTACC	alt_2027_upstream	36	38	34	31	42	31	45	35	42	34
TGAGTAGGGTCATGTC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
GAAGAAGCAAACGGCA	ref_2027_upstream	218	196	334	229	177	265	196	217	202	203
ATTCCATATCGTACTC	alt_2027_upstream	47	36	45	46	19	27	31	47	22	41
TCGCGCTTTGGTGTTA	alt_2027_upstream	3	2	11	5	5	7	2	6	5	2
GCTATCCACGGATGTA	alt_2027_upstream	38	12	47	45	13	34	23	35	16	33
CGTTAGCGCTGCGCCT	ref_2027_upstream	25	22	31	29	12	22	15	15	22	28
CTCTTCCTTCCGCTTG	alt_2027_upstream	118	64	123	115	64	106	57	89	75	82
GGAAGAGATGCAGTTC	alt_2027_upstream	22	7	29	18	11	26	15	20	17	23
GCGATGTTTATGAATT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGCTCGAATATCA	alt_2027_upstream	27	13	24	31	16	19	13	33	10	20
GTCATCCCTTCGGTTG	alt_2027_upstream	138	106	169	137	95	122	89	113	85	112
AGGGACAGTGAAACTC	alt_2027_upstream	43	32	53	41	31	54	27	42	28	42
GATTTCGCTATCCGGT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
TGACAGAATTCATAGA	alt_2027_upstream	49	38	65	62	44	37	44	48	29	39
GTGCCGTCTCATTATG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAACCAACTACGT	alt_2027_upstream	45	21	45	47	38	32	36	41	34	41
GCCCTGTGACCAGATA	ref_2027_upstream	111	63	161	122	60	97	71	97	84	105
ATCGATGCCATGCATA	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGTTTGAAACCTT	alt_2027_upstream	391	254	565	406	241	389	251	380	312	390
TGAACTATTTGGTCAG	alt_2027_upstream	15	9	18	14	2	15	9	12	6	17
AGTTCTATCAGTCACT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
GAATGCAAGGCTCATA	alt_2027_upstream	101	73	167	130	54	105	68	116	76	81
CGGGAAATACCCTATC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGGCCCCCGCTGT	alt_2027_upstream	108	58	91	77	39	84	65	58	61	86
TTCGCCGCTTGCATTC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCATCTTGCTTAC	alt_2027_upstream	22	18	36	20	17	20	18	29	25	24
ATTTCCATTTCGTTGG	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
ATGCAGAATTAAGTTT	alt_2027_upstream	43	35	44	52	43	60	28	45	40	45
TGAATAATATGGCAAT	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGCGCGTGCCATA	alt_2027_upstream	45	155	70	51	124	48	162	47	153	41
TTGGCCGTCCATTACC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
AGAACCGACTTCATAA	alt_2027_upstream	16	6	13	24	8	16	18	16	19	5
TACACCGTACGGAAGT	alt_2027_upstream	12	7	18	12	8	13	9	12	10	10
GGCTTTAGCGCGGGGC	alt_2027_upstream	7	3	11	12	7	9	2	9	8	8
GCCATTCACTTCATTC	alt_2027_upstream	24	23	62	33	30	30	25	38	17	38
ATGGGCCCTTCGCTGC	alt_2027_upstream	0	0	0	0	0	0	0	0	0	0
ATGTGGAGCCTATACG	alt_2027_upstream	108	74	143	108	79	113	84	88	62	99
GGCGGGCACTACGTGC	alt_2027_upstream	9	8	16	13	10	8	5	7	12	12
GTTTTCATACTCTGCT	alt_2027_upstream	37	9	43	31	16	22	22	23	20	22
TAAATTGCTTAAGTTG	alt_2027_upstream	55	43	72	39	38	65	38	52	43	53
CAGGTGGTACTATCCA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GCTATGACTGTCGGCC	ref_2069_fdr	87	78	93	81	97	72	74	75	114	72
ATTACGCATAACCTAG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CACTTCTGATTGGTCT	ref_2069_fdr	56	55	69	69	62	52	69	52	55	56
CATATCACGAAGTTAG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
AAAGGTCTTTCTATTC	ref_2069_fdr	7	8	13	7	7	7	7	6	6	8
ACGTCACCTATTGTGT	ref_2069_fdr	47	75	65	64	59	55	63	56	73	55
CCGAAGAGAGGCTAGG	ref_2069_fdr	76	60	62	60	51	67	77	51	79	53
AAACGATATTTGCCAT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGGCCATTCCAAG	ref_2069_fdr	18	29	23	19	21	22	26	12	23	18
ATTTAGGGGCAGTTAT	ref_2069_fdr	66	42	79	72	59	57	54	64	71	43
GAACGTGTGTATAATC	ref_2069_fdr	4	8	11	7	5	6	4	5	12	5
AGAGATGCTTTCCGTA	ref_2069_fdr	17	22	35	23	24	25	23	23	16	20
TTCGCGGATCTCGGCG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GTTAACGCCTCTCGTG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GCAGGCTTCAGCGTCA	ref_2069_fdr	3	5	3	3	6	5	3	1	1	9
GAAGGAGCGCTTGTGC	ref_2069_fdr	85	85	100	85	91	101	82	80	102	73
GACAATTCGTTATTTT	ref_2069_fdr	39	51	63	53	47	50	68	52	62	49
CATGTTTGTACCCACT	ref_2069_fdr	8	8	4	4	6	3	1	5	4	5
TAGACATGAATCGCGT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GGATCTACAGGTTCGA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGGTAGGGAATTG	ref_2069_fdr	23	18	23	23	21	29	19	20	27	17
AATACGGCCTGGGTGA	ref_2069_fdr	22	7	18	12	10	15	8	12	6	11
CGTGTTGGTGCCTCCT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CCATGCGCCGGTACGC	ref_2069_fdr	22	17	24	25	29	23	29	33	27	19
TTGGGTGTCTACGCAT	ref_2069_fdr	5	5	10	19	4	14	14	10	10	3
TCGGCCCATATCACTA	ref_2069_fdr	4	13	14	16	12	10	10	11	12	9
GCGATTCTCGAGCGTT	ref_2069_fdr	11	12	14	6	13	7	7	19	20	12
CACTTTACCGAGCCGC	ref_2069_fdr	36	47	47	50	61	49	49	43	45	54
CGGCCTTCTTTTCGGC	ref_2069_fdr	5	5	3	5	0	5	7	6	13	2
ATTCTGGTAAATGGTC	ref_2069_fdr	41	59	46	66	49	51	44	51	44	38
GGACTATCTTGCATGG	ref_2069_fdr	16	20	24	20	19	34	24	18	24	18
TTATTGGTGATCACTA	ref_2069_fdr	23	27	34	40	27	24	36	22	38	19
TGCCTTTACCCATAGC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GCTGACGCCTCGGGAG	ref_2069_fdr	16	14	18	11	13	8	12	18	16	19
TGTTCCACCTTTTTCG	ref_2069_fdr	10	6	20	18	20	17	19	12	26	18
GGTGCTGGCCTTAGTG	ref_2069_fdr	17	29	13	19	24	20	21	18	27	20
TTATGGTTATGATCTT	ref_2069_fdr	15	15	23	12	18	18	16	20	21	14
AGTTTAGCCTCAGATG	ref_2069_fdr	35	33	34	32	46	35	36	30	31	34
ACGTCGAGATCCCGAC	ref_2069_fdr	21	38	50	35	22	34	24	36	21	27
TGCGCTAGTAGTGGTG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCCGGTTTTTAAC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TCCTACCGTACCCGGA	ref_2069_fdr	26	34	29	27	50	23	48	25	46	26
TTGCGGTTATGCTGGA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
ATATGTATAGGCTATT	ref_2069_fdr	4	4	12	6	11	7	8	15	5	6
GCACAGTACCGTCCTT	ref_2069_fdr	14	25	22	15	22	17	24	12	26	14
GTTATGAGTTTCTTTT	ref_2069_fdr	1	2	3	2	3	4	4	4	10	3
ATGTTCTTTTCAACGC	ref_2069_fdr	14	6	8	14	4	6	9	5	11	9
CACACTTTCACCACTC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GTATCTGAACTCAGCT	ref_2069_fdr	26	18	26	32	31	27	31	21	24	23
AGCCAGTGTTACACAC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GGTAAATAGTTATCTG	ref_2069_fdr	3	2	4	1	4	4	1	3	3	2
ATCGAACGTACACAAT	ref_2069_fdr	24	52	67	38	29	35	52	44	53	34
CACCGTTAAGCTATTA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCAAGCTATCATT	ref_2069_fdr	60	64	65	43	52	60	60	42	55	42
GCTCAACGGTCAAATG	ref_2069_fdr	37	57	50	43	45	40	60	31	53	26
TCTTGACTATTATATC	ref_2069_fdr	52	55	61	54	56	46	47	27	52	64
GAAGTCCCACTTGAGG	ref_2069_fdr	31	27	31	34	37	31	32	20	36	16
CAGTTCTAGAACAGTT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCCGTTAAGGTAG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTAGCTACTATA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCGGGCTTTTCTC	ref_2069_fdr	7	14	11	9	3	9	11	12	8	10
GGTCCCAGCACATTTT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CTATTGGGCTTGGACG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGTAGCGGGCACG	ref_2069_fdr	21	23	32	16	15	16	20	23	32	11
ACCACTTATTGGCACC	ref_2069_fdr	45	45	45	40	48	53	43	40	66	39
AACTCTTGATCTTTGA	ref_2069_fdr	26	19	21	27	14	17	16	16	25	22
GAGGCGGGGTTCGTAC	ref_2069_fdr	11	8	13	7	5	8	10	6	4	4
TGATTCAGGGCGGTGT	ref_2069_fdr	18	20	29	18	20	16	28	23	28	27
TCACGATCCAATACAG	ref_2069_fdr	73	82	85	62	65	52	62	45	92	61
ACATCGCATTAGACTC	ref_2069_fdr	21	15	19	35	27	25	20	24	27	13
CCAGCGGCCTACGTAT	ref_2069_fdr	26	100	24	25	99	20	116	29	121	12
GTCAAATTCAAGAGTT	ref_2069_fdr	10	4	15	10	8	11	6	6	10	11
GCAGCAATTTTGTTTG	ref_2069_fdr	31	38	47	22	20	37	46	32	37	39
CTACAAGTCTTCGCAC	ref_2069_fdr	46	53	38	38	64	28	58	42	61	29
GGCGTGATTGAGTCAG	ref_2069_fdr	30	43	50	37	54	54	62	31	59	34
GCGTGTGTACTGGTTG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTAACACGGGCAT	ref_2069_fdr	79	55	70	59	67	61	65	67	72	65
ACCTCGGCTTATAGGA	ref_2069_fdr	0	4	2	3	6	4	7	3	5	4
TTTGACTTTGAGGAGT	ref_2069_fdr	33	42	49	29	44	30	46	40	42	31
GTTAGTCTCTGTCCGA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CTTACTCCAATGAAGG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTGTTATTCTTC	ref_2069_fdr	74	62	85	69	59	64	56	50	75	59
CATCGCCGCGGTCGAC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
AACGTATCGGACAGTA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCATGGTTATCAC	ref_2069_fdr	6	3	5	4	3	6	7	5	6	1
ACCCCATAATTAACAC	ref_2069_fdr	27	47	21	24	42	16	51	17	49	14
GAAATTGCCTCGTACG	ref_2069_fdr	18	23	30	23	11	29	16	21	19	23
CCTAATGGTGGACGAC	ref_2069_fdr	21	19	15	33	28	17	23	16	27	16
TCACACTTGATGGTAG	ref_2069_fdr	12	7	15	15	15	16	21	5	8	14
CAAATCTTGCTTCGGC	ref_2069_fdr	134	140	168	146	107	134	140	119	139	137
ATCTACTGCCGCGGGT	ref_2069_fdr	44	43	34	29	39	34	53	33	48	28
GGCTACGTATTCGCCC	ref_2069_fdr	27	32	49	39	32	23	31	44	30	32
TGCATGGACAAGTCCG	ref_2069_fdr	65	58	66	62	65	53	56	56	48	53
TAGGTGCTTCCATTTC	ref_2069_fdr	24	36	38	19	37	16	32	20	42	20
TCTAGTGTCCGCAGAA	ref_2069_fdr	2	13	4	6	14	4	11	5	14	3
CCTCTGTGCGCTCCTT	ref_2069_fdr	38	54	53	40	53	54	66	43	79	31
GGTTGTAATCTATCTT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GAAATGCCTAAGTTCC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GATTCGTAGATCTTAC	ref_2069_fdr	2	4	4	4	10	3	4	8	8	4
AATCAGTCACTATGTT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTATGGCCCTCC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCTGGTTCTGTT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTTTTTTCCTTC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGGCTTGGCCTTC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
ATGGATGTTCCGACTT	ref_2069_fdr	11	9	17	14	19	15	9	12	15	17
TCATATAGACAGCGCT	ref_2069_fdr	35	32	40	34	46	38	32	30	32	27
CCACCCATTTCTTTAC	ref_2069_fdr	10	46	10	12	40	11	40	5	44	15
GTAATTGCCGATTCCA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGGATGTAATCTT	ref_2069_fdr	33	41	23	48	46	32	42	38	38	32
CACCGTTCGATTTTAG	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
AAACCTTTTGTTTAAT	ref_2069_fdr	61	29	75	57	56	49	47	60	62	52
GTTATATTTAGAAGCC	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCTTCCCTCATCT	ref_2069_fdr	27	23	33	26	22	28	18	18	19	26
ATATCCAACTATTAAA	ref_2069_fdr	65	79	94	62	57	54	80	38	69	54
AGTTCGTATAAGCTTG	ref_2069_fdr	35	31	46	36	39	41	31	33	42	29
GCTAGTCAAACCTCTG	ref_2069_fdr	8	14	15	15	18	12	11	9	19	13
TGAATATGCGAAAGTT	ref_2069_fdr	14	17	21	20	20	30	27	17	26	15
CGCCATTCACACGCTA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
TACAGGTTTTCGAATT	ref_2069_fdr	54	49	61	60	44	55	71	39	65	50
CTTTCTTCGCACCAAA	ref_2069_fdr	8	11	10	5	2	8	10	5	9	1
TCACGTTTCGATAGTC	ref_2069_fdr	7	8	10	7	3	3	4	3	8	5
TGAAGTTTGTCCTTGG	ref_2069_fdr	33	33	40	24	36	26	39	25	35	22
GTTCAATTAGTGGGGG	ref_2069_fdr	9	6	10	3	3	7	9	2	6	4
GGCCCTCACTACATTA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
AAAGTTCACTCACAAT	ref_2069_fdr	110	106	138	103	115	102	108	108	103	102
AGGAGTTTGCTCCCTA	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTCTAACATCGGT	ref_2069_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGGGGTTTATTAC	ref_2069_fdr	56	67	54	54	67	48	60	50	76	47
GATCGGCTGCAAAATG	ref_2069_fdr	48	50	65	42	39	45	56	42	48	44
TTTCGGATCCACAGTG	ref_2069_fdr	12	17	21	13	17	17	29	11	22	23
ACGCTGGTCTATATAA	ref_5654_new	4	1	1	1	5	1	2	1	4	2
AGTGCCCTTTCTTAGA	ref_5654_new	23	41	15	17	26	13	23	8	40	12
TTTCGAAGTTGTCAGT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TAGCTTGGTGGTTATG	ref_5654_new	22	52	28	27	55	21	78	26	69	15
GATGGAGGGATAAGCA	ref_5654_new	0	0	0	0	0	0	0	0	0	0
CTGGTTCGGGTCGTAC	ref_5654_new	3	31	4	4	43	4	39	5	38	3
TGCGTTTGGAGATACA	ref_5654_new	8	19	13	6	16	8	27	13	26	5
TGCGCATCTCTCTCTG	ref_5654_new	0	0	0	0	0	0	0	0	0	0
AGCCGAAATTTATTCT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
GTGGTTATTGCCGTTG	ref_5654_new	3	11	9	4	14	1	16	6	25	5
TCGTGTGGGGTCCATG	ref_5654_new	0	0	0	0	0	0	0	0	0	0
GTCTCCGCCAACGCCT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
ACGGACCGGCCCCAAA	ref_5654_new	0	3	4	4	1	2	5	0	5	1
TCCTAGGGCGCATGAG	ref_5654_new	1	18	11	9	28	10	22	7	21	7
CGTGAGTAAGAATAAA	ref_5654_new	51	156	59	59	172	60	159	51	191	66
CATACACGTGGATCTA	ref_5654_new	5	13	10	4	9	7	15	10	9	10
GTTCGCTCCTACTTTT	ref_5654_new	3	10	1	5	8	2	2	1	8	2
GGATATGCGTACAACT	ref_5654_new	25	70	16	15	74	15	64	30	60	23
TATGCTGAGGCGGGAC	ref_5654_new	2	1	1	1	3	1	8	3	2	3
GGCGGTTAAGTGGTCT	ref_5654_new	32	82	37	25	58	35	57	26	71	31
AGTGCTTTGGTGCTGT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
GCAACAGGCCTATTTG	ref_5654_new	20	65	21	15	58	19	74	21	54	18
AGTGTGCTCATAGACA	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TCTTATATAGGTCTCC	ref_5654_new	4	11	10	6	6	2	15	8	15	2
TAGTTGCCGGTTGAAT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TCCATCGCGGTAAGTT	ref_5654_new	4	14	5	1	15	4	7	6	8	3
TGTCCTAATCCTTTGG	ref_5654_new	43	101	58	44	105	50	107	26	114	35
TAAATAATCTCTGTAG	ref_5654_new	5	10	14	4	12	10	10	2	14	1
AAACACCGACTCCTGG	ref_5654_new	0	8	1	3	5	0	3	1	3	1
TATTTCATTTTTGGGT	ref_5654_new	10	39	11	9	29	9	43	23	42	6
TCTCAATAGTGCGTCC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
CACGAACAGTATTCCC	ref_5654_new	7	11	11	5	15	3	20	7	16	7
TCTCTCCGGAATCTGT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TACGATCCCTCGGGAT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
AACTTCTGATAGTGGT	ref_5654_new	72	200	112	103	184	81	252	86	207	85
CGCGCGCTTCTATCGG	ref_5654_new	8	13	8	6	11	5	7	5	15	6
GTCGATTCTCCTCAGG	ref_5654_new	3	11	2	5	10	1	7	2	7	1
GTCCCAGTCTCTGTTG	ref_5654_new	39	100	45	39	98	30	115	30	119	36
AGCCTGGACATTCCGT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
CTCACCGGAACGGAAA	ref_5654_new	5	9	2	5	12	5	5	6	7	2
TCCAATCCTTGGTAAT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
AGTAAATTCAGTTTAG	ref_5654_new	57	132	58	45	126	39	131	55	129	58
CCGATATGCCCGTCAT	ref_5654_new	13	29	19	5	50	16	55	14	46	16
TAAGATGACCCGCTGG	ref_5654_new	0	11	1	0	6	2	5	3	2	0
AGCACTTTCTCAGCGG	ref_5654_new	10	30	16	17	34	15	39	16	40	13
GGTTTCGCATGGGGGT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTATTAAGCAT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TGGGGATCATTGAGCT	ref_5654_new	10	28	13	14	29	15	36	13	36	12
CTGTGATACGATCTCC	ref_5654_new	10	30	16	15	43	15	48	11	44	11
CTCGCTTTGCGTGAAC	ref_5654_new	16	65	23	23	46	15	53	18	73	16
GTGACTCCATCGTCTC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
CACTGCGTCACCTATT	ref_5654_new	3	18	2	2	12	2	10	0	15	4
TGATAGGCCTTGTCTA	ref_5654_new	0	0	0	0	0	0	0	0	0	0
CGGAGACGCTTCCACC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
GACACTCTTTAGTATC	ref_5654_new	3	9	3	1	8	3	12	3	5	2
TTTCTCTCTCGTCATA	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTCTTCTTCAA	ref_5654_new	5	5	3	3	11	1	7	1	5	1
GATGCTGTTTTTTTTT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
CTTCAGCCAGGTATGT	ref_5654_new	2	23	10	4	25	6	16	4	22	4
GCTTCACATGAAAGGT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
GTAACACCGGATCAAT	ref_5654_new	21	50	22	16	66	21	69	22	65	20
GACCTTCCGTAGTTTA	ref_5654_new	29	34	44	20	27	25	38	29	38	24
CATTTTTGTTTCAAAT	ref_5654_new	0	1	2	0	0	0	0	0	2	0
TTTCTACTTTGCGCGG	ref_5654_new	51	53	47	38	46	30	55	36	70	29
AACTACCTTAAAAGTC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
AGGGAGTTGGGACAAA	ref_5654_new	5	20	6	5	33	8	26	8	19	8
GTACGAAATATGTTTC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TTTTATATTGGTTTCA	ref_5654_new	10	27	29	17	30	9	28	16	42	14
TGACTAACTGTAATCC	ref_5654_new	14	27	14	14	25	13	29	10	33	9
GATGCTGTTTTTTTTG	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TGATTTATAATTACAA	ref_5654_new	13	21	16	10	35	16	28	13	29	16
ATGAGGAGGCTCCGCT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
ACGTTCCTACGTTAAG	ref_5654_new	14	37	12	16	21	14	37	14	33	12
GGTCTGACCTGACGTA	ref_5654_new	3	2	4	4	2	5	6	1	3	0
GCCACCGCCACCAAAT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TCCGGACGTCGCTTGC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TGAAAATAGCTGCTCT	ref_5654_new	8	11	14	7	23	9	30	8	22	7
CCATCAGGTCGAGTGG	ref_5654_new	21	49	30	23	52	17	46	18	48	12
ACCTTTCTTGTCCATA	ref_5654_new	2	10	0	2	18	6	11	6	17	3
CGTTTGCCGCTCGCTC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TTTAGCAGTCTTTCAC	ref_5654_new	11	25	5	5	19	6	17	5	16	4
TGTCTCGTGGTCCTTT	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TGGGATCGGGGCCGCG	ref_5654_new	11	25	24	18	33	11	37	12	43	10
CTCGCATTCTTAGCAT	ref_5654_new	7	24	11	7	21	11	27	5	30	11
TGTCGTCAGTAGGTTC	ref_5654_new	9	14	7	5	17	10	19	6	20	7
TCGGGTCCCTCGCGCT	ref_5654_new	8	12	3	7	26	9	16	4	24	1
CTAGTGATCTGCCATA	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TTGCGTATTAGCTCAC	ref_5654_new	60	157	67	56	180	56	166	57	177	67
AGAGATGGTTAGAATG	ref_5654_new	0	0	5	0	2	4	0	1	4	1
AATGCCTCTGATCAGG	ref_5654_new	16	38	27	18	34	19	42	18	44	15
TTAAACCGGACTCGTA	ref_5654_new	0	0	0	0	0	0	0	0	0	0
GCCGCTTACTTAGGGT	ref_5654_new	0	5	1	1	1	4	5	2	6	0
GTCTGAGATCCCACAG	ref_5654_new	2	4	5	3	8	4	13	0	14	8
CTAATCTTGATGTCTG	ref_5654_new	0	3	1	0	3	1	1	1	4	2
AAGCACGATCTTAGTC	ref_5654_new	0	0	0	0	0	0	0	0	0	0
TGTTCAAGTACTATAG	ref_5654_new	31	73	27	34	88	32	85	18	83	19
GCATCGCGTCCTGCCG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TTTCAGTGTCCGTGGA	ref_2572_negative	10	13	5	5	11	8	6	9	11	4
AGGTGTTGTGATCGAT	ref_2572_negative	12	8	18	9	15	10	12	8	11	10
TTATCCGGTCAGTGGC	ref_2572_negative	22	17	18	11	15	20	21	10	14	18
GGGACTTCGTGCCAGG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CAAACCCTTTCTGATG	ref_2572_negative	28	61	61	32	51	30	50	39	41	31
GAAGAGGTTTGTCTTA	ref_2572_negative	11	15	27	13	12	14	22	15	24	11
CCCGGCAGTTTAATCG	ref_2572_negative	16	25	18	13	10	8	22	18	19	10
TTTAAATGCTTATCGA	ref_2572_negative	8	10	13	8	7	11	12	10	11	4
TAGTTAACCAACTCCG	ref_2572_negative	20	31	27	26	29	26	34	29	28	17
GGGCGATTTCGTAAAA	ref_2572_negative	28	12	32	26	19	33	26	30	28	19
AGACGCCTCACGTAAG	ref_2572_negative	3	3	7	10	12	6	9	10	5	6
GGAGAGTTGCTCCTAG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TGTTCCACTTTAGGAA	ref_2572_negative	38	21	40	34	37	26	38	31	38	37
GCACGACGTCGGGCCG	ref_2572_negative	34	28	39	41	36	26	32	28	57	21
GTCGTCGCAATACGTG	ref_2572_negative	19	19	30	29	23	23	9	14	24	17
TGATAAAACTCATCTG	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
TGTTGTATGGCGATGT	ref_2572_negative	26	13	17	14	20	16	18	10	8	11
CAAGACTAGAATGCTT	ref_2572_negative	43	45	49	41	51	40	56	38	46	32
GGAGGACCCAAGGATA	ref_2572_negative	62	59	66	59	64	70	82	35	71	45
GTTGTAGTTCATCCGG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GGTTTTATCGTTAAAG	ref_2572_negative	14	9	20	14	27	19	16	10	24	14
TCCGTCAACATATGGC	ref_2572_negative	76	49	70	54	42	61	52	54	58	58
TCGTCTCATGCTAGAC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GTAATCAATCCGACCC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
AGTGCTACATCGACAC	ref_2572_negative	41	34	36	42	50	24	41	23	52	37
GTCGTTGACTCCGGAT	ref_2572_negative	43	53	56	66	65	58	64	47	60	40
AAAATAGATCTCCTCC	ref_2572_negative	26	42	38	27	39	26	30	20	32	24
TTTGCCAATTACGATT	ref_2572_negative	0	0	1	1	0	0	0	1	4	1
GCGAGTGTCAGACATC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
AATCCCATTTCTGTTG	ref_2572_negative	1	6	9	8	4	5	4	5	4	6
TGTATTACACAATACT	ref_2572_negative	75	102	100	85	109	82	98	97	106	74
TTAGAAAGTCATTGCT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
ACTTTCACATCGTTAC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TGCGCGCTTCTACATA	ref_2572_negative	54	48	64	60	56	56	68	72	71	56
TGGTTCTGGGGTTTAT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TAGCTATTAATGGGTT	ref_2572_negative	181	236	258	205	246	192	249	187	222	177
CGGTTTGCCAGTCTTC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TACCCACTAACCCGGC	ref_2572_negative	40	45	53	51	46	58	29	45	45	38
ACGGCTCCCTGTCACC	ref_2572_negative	28	29	35	21	25	24	24	27	39	16
GAGCGCCTTCTCTTCA	ref_2572_negative	57	41	53	58	48	59	61	61	73	54
TAATGACCGCTTCACT	ref_2572_negative	67	81	94	40	88	59	66	60	63	55
GGAATTCAGCGATCCT	ref_2572_negative	240	185	283	262	234	231	222	247	222	224
TTCGTTTGAGTTTGAG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CACTTGCATGGACATT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TTCTGGACCCTTCTTT	ref_2572_negative	12	5	15	11	9	6	19	14	13	9
ATTTTAGGAATCTGGC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CATGGCTCGTAAGGGG	ref_2572_negative	16	20	19	26	19	18	21	14	26	15
GGCGATTGTTAGGCAT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TTGGGGCCGGATTTAG	ref_2572_negative	24	40	39	27	26	38	38	30	34	33
GTCTTCGATCCCTCGT	ref_2572_negative	45	28	49	58	39	44	47	42	46	38
GTTTGTCATTTTATTT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GCCCTGACGGACGTGT	ref_2572_negative	10	5	10	15	18	10	18	11	11	13
CCTTTGCATCTAGAAC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TCTCGGCTTCCATTTT	ref_2572_negative	195	160	258	204	211	213	175	184	176	193
GTAGTGGGATGGTCTG	ref_2572_negative	18	10	27	13	16	16	17	23	25	19
AGGGCTTATAAAATGC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GGTCCGGCGCGCCATC	ref_2572_negative	70	48	74	61	48	62	55	63	67	60
TTAAGTGTATGCGGTA	ref_2572_negative	10	9	13	11	10	4	6	10	6	2
TTTTATAGTAATGGAT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
ATCCCGCTGCAATCAC	ref_2572_negative	8	13	6	5	9	2	4	4	6	5
GCTAATATTCCTACAT	ref_2572_negative	22	38	44	36	16	29	20	18	33	29
CATGTCGTTTCGGTCT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TGGCAATCCGTTTGCG	ref_2572_negative	10	26	13	19	18	10	15	22	21	12
ATTGACCACATATATG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CACCTTATGTTTAGAG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CCAGTTCACACCGTCG	ref_2572_negative	8	43	10	18	43	11	38	13	58	14
GGTTTATGGGGTGCGA	ref_2572_negative	36	33	49	31	31	41	32	27	37	17
AGCGCTTATTTAGCTA	ref_2572_negative	23	23	20	16	27	19	19	19	21	23
TACGTTACGTGTCCAC	ref_2572_negative	65	89	104	90	72	81	72	82	95	69
CTCTACTAACGTATCT	ref_2572_negative	19	26	27	19	22	22	35	16	30	20
TAGCTTGCTCGGCGCA	ref_2572_negative	34	27	32	26	31	26	31	44	38	26
TTTAGGTGCATAGGCG	ref_2572_negative	93	95	111	116	102	105	103	72	108	81
CGGGGCAAGACTTGTT	ref_2572_negative	19	24	31	31	32	18	35	33	47	33
TAGATGTTTCTAGAAC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CCAATCGATGCATGGT	ref_2572_negative	13	9	5	7	6	6	9	5	9	3
AATTCAGCCGCTTGAC	alt_2572_negative	11	30	22	16	26	8	21	20	29	15
CTTGAACTTAATTGGC	ref_2572_negative	18	15	19	14	15	25	19	15	22	12
TACTGTTGCGCAGTTA	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TCCACAGCAAGTGAGT	ref_2572_negative	26	32	27	28	15	14	23	19	42	11
TTGACCGGGAAGTCCA	ref_2572_negative	44	65	72	65	48	53	69	44	65	36
CGGGTTTGACTGCGTT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TTATGAATCGTTCGAA	ref_2572_negative	1	2	1	1	1	0	3	1	0	2
CGCTTTTTACTGTCAT	ref_2572_negative	50	61	54	45	57	39	52	37	52	33
TTATTGAGCTAGTAAA	ref_2572_negative	100	129	123	105	132	103	119	95	112	91
GTTCCTTAACGCTGCC	ref_2572_negative	61	40	75	50	50	53	65	38	44	44
CTGTTTGCGGGGGTAT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TAGTGTAGGACAGGTA	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TAAGGTTTAGGCTATT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CAGTGGCAGAAAATTT	ref_2572_negative	179	171	228	194	157	165	180	172	147	128
TCCTACAGATTTTTCA	ref_2572_negative	170	157	192	189	157	159	187	166	203	125
GGTCCATAGTTTCCAC	ref_2572_negative	29	28	37	26	34	37	30	18	37	26
GTTATTGATACCCCGA	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TGGTTCTCTTTCGCCC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GGGGACAGGCATCATT	ref_2572_negative	57	63	74	74	67	51	59	49	58	49
TAAACTTACATAGAGT	ref_2572_negative	65	94	72	83	73	71	54	65	83	47
TTTGGCCGCCCTACGA	alt_2572_negative	13	16	16	14	13	13	9	6	11	4
TTGTCTATTGAGAACT	ref_2572_negative	33	40	46	31	33	25	34	25	30	26
ACGCCGTTCTTTATTA	ref_2572_negative	10	12	13	14	13	13	15	10	20	13
TTGATCCCCACATCTA	ref_2572_negative	39	54	51	58	37	48	40	34	44	42
AGCGTTTCTCCCGGAG	ref_2572_negative	28	20	20	21	27	18	32	27	35	30
GTTTCCGTTCTCTCAA	ref_2572_negative	14	9	14	9	7	8	6	4	5	5
GCGGCCTTTTAACGTT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GTCTTATCTGCATCTG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TCTGTTTAACCTGGCC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CTGCGCTAGGGTCAGA	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CAAAAAGTCGGGCTTC	ref_2572_negative	12	11	18	10	18	19	14	16	24	12
TACTCCAGTGTATTCT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TATTTTTCCGTACTTC	ref_2572_negative	66	55	77	70	37	53	61	55	59	64
GTTCAAGCAGGCGCAA	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TACTAAAGGGTTTAGG	ref_2572_negative	71	48	83	71	54	58	56	55	75	60
GGGAGTGTTCCTTGAA	ref_2572_negative	42	27	44	27	29	38	30	37	36	34
CGCTTGGTGAAGCGAA	ref_2572_negative	18	20	10	6	17	8	13	11	12	11
GTTCCCTACTCTCATA	ref_2572_negative	40	34	45	36	35	22	39	29	38	25
GTAACTTGTATTCTCC	ref_2572_negative	1	9	2	0	9	2	1	0	5	3
TCATTTACTTAACCGG	ref_2572_negative	35	26	24	25	24	26	26	30	32	17
TGCCATATTCTGTTAT	ref_2572_negative	46	25	51	34	42	36	38	39	46	43
TCCGTCTTTTTTGCAT	ref_2572_negative	1	0	1	0	2	0	0	0	1	0
CTCTCTACACTACATT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TGCTTGGTGGGCTTTC	ref_2572_negative	21	18	25	21	21	26	20	14	17	15
GTTAACCCCACCTTTC	ref_2572_negative	43	49	46	46	59	49	63	35	56	43
TCCTGGTCACACCGGA	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
ACCTGAGGAGATCCAT	ref_2572_negative	77	82	91	105	92	71	100	73	83	88
CTCTTGGAGGAGAATC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
CTTGCCGCCGGATCTT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TTTTTGCTCTCCAATT	ref_2572_negative	25	17	26	36	28	29	27	20	21	30
AGGGCATGCAATCCTC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TTCAAGCTACCTTTCC	ref_2572_negative	5	16	12	7	12	7	15	2	11	3
TCCAGATGAGGGATAC	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TCATTTGCTCTCAAAT	ref_2572_negative	13	27	15	19	20	21	21	23	21	8
CCTAAAACATGTCGCG	ref_2572_negative	15	20	26	17	34	19	26	23	31	15
CCTAGGCTATGCGACT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
AGAATTCATCCATGGT	ref_2572_negative	18	6	29	16	17	30	20	17	28	30
GGTTTTTTGCATACTT	ref_2572_negative	17	21	29	16	27	22	15	26	21	14
ACAACGAAACCGTGAT	ref_2572_negative	62	61	71	64	62	62	73	54	74	56
CGGCGCCTTCTGTGTT	ref_2572_negative	2	7	8	3	12	6	12	3	12	4
TTCTCGTCTCATTCCG	ref_2572_negative	18	21	24	21	12	26	26	20	32	24
CAGATTTCTGTTCCGT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GGCTTTCGGTTCATGG	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
GTACAATTCTCGACTT	ref_2572_negative	0	0	0	0	0	0	0	0	0	0
TGGGTTTAAGAGGTAA	ref_2572_negative	50	28	49	38	41	38	36	33	39	22
GGCTATCGGGTTGGTT	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGGCGTTCGGTTG	ref_1643_fdr	16	9	12	12	6	16	13	8	11	5
GAGTTGTGGGAGCGCC	ref_1643_fdr	12	8	15	16	11	15	19	6	17	2
TACTCCTCTTAATTTT	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTTGTCAGGGTA	ref_1643_fdr	4	5	5	4	12	7	3	3	9	3
TGCATTATTAGCCCTC	ref_1643_fdr	13	10	11	15	7	15	7	11	9	17
CCTCATGAGGATGTTT	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCAACGGAAGAG	ref_1643_fdr	25	15	27	12	23	24	22	13	19	13
AAAGAGCCCTTGGTTG	ref_1643_fdr	75	83	79	68	74	60	79	65	82	50
TCTGCCGGCCGTTTAG	ref_1643_fdr	3	4	2	1	3	3	3	1	4	2
CTAGGAGGTCGCTAGC	ref_1643_fdr	25	26	21	32	26	32	31	25	24	15
CTATAAGGAGCACGGG	ref_1643_fdr	1	2	1	0	1	0	0	0	0	0
ACTGAACGGCGATGCT	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAGTGAGGTCATT	ref_1643_fdr	6	6	13	13	11	10	11	9	13	8
GACTCGATTATTTCCG	ref_1643_fdr	24	11	28	22	20	20	16	20	28	17
AACCCGATCGGGTAAA	ref_1643_fdr	9	10	16	16	18	9	21	15	21	11
GGTCTTATCAGGCCAG	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCAATACTTAGGT	ref_1643_fdr	13	11	18	19	15	14	12	15	13	13
TCGTTAAAAACCTGTC	ref_1643_fdr	36	30	43	17	28	22	36	24	12	23
GCCTAGAATAATGCTT	ref_1643_fdr	4	7	7	14	6	9	16	7	13	8
CATCATCGTTATGACC	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCTCGACCCGTAC	ref_1643_fdr	173	143	236	166	185	183	207	167	173	152
ATTTTTCATCTGGACG	ref_1643_fdr	27	24	50	41	38	23	42	31	43	38
GCCCTCCTTGTTCTCG	ref_1643_fdr	94	78	112	97	80	78	81	101	73	76
GTTAAGTGTGCCTCGC	ref_1643_fdr	11	5	14	10	20	5	17	5	15	6
GTGACGATAGTTATGG	ref_1643_fdr	11	10	24	18	11	4	15	22	16	19
GCCCAGAATCCTGGGT	ref_1643_fdr	28	50	35	29	37	22	40	30	33	28
AACTTAATGTCGCGTC	ref_1643_fdr	17	22	15	17	9	19	20	13	14	15
TACCCGCCTGGTTGGA	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
GACTATACGCCTAAAG	ref_1643_fdr	112	74	113	111	106	86	94	147	107	92
CGTAGCATTAGCATTC	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
GACCGGGCGTGGGGTG	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
CCAATGATGGTTTCTT	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
GTTACCCATCGTCGCG	ref_1643_fdr	3	5	5	1	4	2	3	0	0	3
CCGGTGTCTTTAGAGG	ref_1643_fdr	110	95	127	105	104	90	94	90	118	110
ATTCTAGCTTGAGTAC	ref_1643_fdr	11	19	9	8	24	10	14	10	21	12
TCATATGCCCCGCGCC	ref_1643_fdr	8	9	7	4	7	9	9	5	7	9
ATTTCCTAGAGCGTAG	ref_1643_fdr	6	6	18	12	9	5	13	8	11	5
GTGCGGTACCTGGTGC	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGGTTCCTTGCAT	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
GTGGAGGATTGTTCAC	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
CGCATGGGGAATTCTA	ref_1643_fdr	0	0	0	0	0	0	0	0	0	0
CTGCAGAGCCAAACCT	ref_5055_RC	10	12	17	12	11	18	18	18	14	11
GTACCTGTTTTGCAGT	ref_5055_RC	32	42	46	15	46	19	52	20	38	40
AGTTTAGACGTTAAAC	ref_5055_RC	47	48	52	50	51	35	45	49	45	69
GTCGCCTGCCATCAAT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ACTCCCGTACTCAACT	ref_5055_RC	5	35	15	11	30	5	41	12	32	7
TTGGCGTTTAATACAT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CGAACCGGGTCATTTC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
GATTAGAGGCCGCTTA	ref_5055_RC	6	6	23	13	11	6	10	12	6	12
AAGATTGTGTTTGCCT	alt_5055_RC	148	163	196	139	164	168	155	143	163	130
TGAATTGCACTCCTAT	ref_5055_RC	70	57	60	36	51	51	63	42	53	51
GCGTAATTCCTTGTAC	ref_5055_RC	78	91	107	84	84	87	103	81	106	86
TCTTCCGGTCGACTAC	ref_5055_RC	27	54	33	36	65	41	48	43	41	38
ATTGGGTCGGTGCTCC	ref_5055_RC	97	74	123	98	79	57	65	106	102	86
GCATTATTACCACTGC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ATCTTTATACCTTGCC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTGGGCTTACGG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
TATAGTTCTGGTCTCG	ref_5055_RC	55	54	56	50	41	47	50	40	39	33
TCCTGGCTTACGGATC	ref_5055_RC	34	35	41	48	33	47	29	30	57	32
TGGAGGTACCACCTCT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ACGAAATTTGTTCAGG	ref_5055_RC	50	42	50	53	45	46	33	33	37	31
GTCTGAGGTGGACACG	ref_5055_RC	13	13	15	16	3	8	7	19	11	10
GGGCAATGAGCGGTGA	ref_5055_RC	14	20	19	14	16	18	21	28	24	10
TGGCTGGACTTTGTTG	ref_5055_RC	18	13	13	16	19	10	16	15	18	10
CGTTACGAGCGCGTTC	ref_5055_RC	43	37	52	39	31	41	33	42	48	42
TTGTGCGATTTCGCCT	alt_5055_RC	5	3	10	7	7	7	5	7	7	3
CTTGACTCTGTGAGAG	ref_5055_RC	59	45	46	50	40	57	60	47	63	40
TTATCTCAACAAATGT	ref_5055_RC	25	16	33	16	24	16	18	16	16	14
CTACAATGAAGAGCAC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CAGCCTGGCCGTCAAC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CGCCTCCCGCGTCGTG	ref_5055_RC	3	28	2	3	14	2	20	4	26	0
ACTCTTTAGGTGCGGT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
TTGGTACTACACCTAA	ref_5055_RC	31	67	35	44	46	44	59	42	57	27
CTCTCTCTGGGCAGCA	ref_5055_RC	27	21	34	23	39	23	25	29	27	18
GGCGATGGATTCTTGT	ref_5055_RC	43	46	63	42	45	47	43	38	47	47
CCATTCATTAAAGAGG	ref_5055_RC	6	4	12	11	6	8	6	6	12	9
GTAGCTCAGCGGGTAT	ref_5055_RC	503	422	592	486	436	462	400	447	454	451
GGTCTAGGCCACGTGG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ATTGGCCTTTGCCATA	ref_5055_RC	2	6	6	2	7	5	4	3	12	1
CCCTATCCCAGTGATC	ref_5055_RC	10	8	9	8	11	7	11	6	14	4
TCACACGAGTGTGATT	ref_5055_RC	18	29	33	36	25	28	32	21	17	21
TCATGCTCCCCGTCTT	ref_5055_RC	3	27	2	0	30	3	33	2	19	3
AATGCGGCCGCTATTA	ref_5055_RC	0	0	0	1	0	0	0	3	1	0
GCGCAGAGTAATATAT	ref_5055_RC	33	22	30	26	22	30	30	27	35	24
TCATCGCAATCTTTGT	ref_5055_RC	33	48	43	30	28	38	22	20	39	43
GAGTCGAGTCCTGCTG	ref_5055_RC	21	16	37	46	21	28	25	15	22	30
CGGACAGTACTAGCTG	ref_5055_RC	7	9	12	10	7	5	14	4	5	5
CCTCTGTTCGCCACTC	ref_5055_RC	7	7	8	4	7	7	14	8	7	14
ATCGTTTTAAAGCCTC	ref_5055_RC	5	5	5	8	7	5	4	6	4	4
ACGAAGATTGATTACA	ref_5055_RC	76	79	106	87	52	104	75	84	76	69
TTTTACTAGCTCCAGT	ref_5055_RC	10	3	3	3	4	2	3	2	4	1
AATCCCTTTCAATAAC	ref_5055_RC	26	33	41	33	42	32	39	32	44	27
TGCTCTAATTCTCACG	ref_5055_RC	14	5	8	14	8	15	6	12	10	9
CTAATCTATGAAACAT	ref_5055_RC	33	53	37	31	29	31	23	31	21	35
TGAGCACTTCTTGCGC	alt_5055_RC	73	88	84	65	73	72	79	51	78	68
CCATGTTTGGAACTAC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CCAATCGTTTCGTCAG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
AAATGAGTACTCACCT	ref_5055_RC	11	75	23	22	85	13	81	17	75	18
AAATTCTTAGATCAAC	ref_5055_RC	10	10	6	18	8	7	14	14	11	8
ATCCGTTGGCTCTTAC	ref_5055_RC	8	5	13	10	11	11	11	9	4	10
CCTGGCTTCTTTATCG	ref_5055_RC	10	11	14	10	2	7	7	8	9	9
GGGTCCTTGCCACTTT	ref_5055_RC	110	80	121	103	105	98	89	116	92	104
GGTGCGCAGGACGTTG	ref_5055_RC	22	17	30	18	15	12	26	17	24	17
TTGTAGTCTTGGTCTC	ref_5055_RC	38	42	59	45	43	40	55	43	48	33
TGCTACAGTTTTTTAC	ref_5055_RC	21	16	30	24	22	24	24	22	25	23
AAATAATTCTTCTGCA	ref_5055_RC	41	49	62	42	30	32	44	45	38	43
TGCTTCTAGCATCGTG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
TGTCGAAGATGGGGTA	ref_5055_RC	19	21	26	13	24	19	17	29	15	18
CGTTTGTCGCGAATCC	ref_5055_RC	54	65	92	66	68	59	61	82	69	53
ACGTCGTTATCTTAGT	ref_5055_RC	7	6	10	8	7	11	11	9	13	15
TTTGTCCTCGGCTTGG	ref_5055_RC	23	13	19	23	20	21	22	25	26	16
TTTATGGAGATCGTGG	ref_5055_RC	58	48	84	55	39	69	57	48	55	51
TATTTGACCCGGACTG	ref_5055_RC	46	44	58	56	35	52	45	28	70	37
GTTTATCGTTGGAGTG	ref_5055_RC	70	60	98	68	66	46	73	59	82	73
GGGGTGCTACGCCTAG	ref_5055_RC	80	77	136	81	109	75	77	74	80	74
TACTTACGTCTCCCAT	ref_5055_RC	68	147	87	54	162	72	173	71	155	68
TGTCGCCGAGAGCTTC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
GTTGGGATCGCACTCA	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CGTTATATCGTCAGCG	ref_5055_RC	65	57	65	68	56	54	46	65	74	45
CTACAACCGCTGGTGC	ref_5055_RC	18	21	21	27	24	6	25	6	24	11
ACAGCAAGCGGTTCTA	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CGATTTTGATTAACAG	ref_5055_RC	11	21	25	22	17	16	16	17	25	9
CGTCTTGAGGCTGATT	ref_5055_RC	44	28	68	56	39	40	43	37	35	44
CCTGTCATTTAATATT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
AATGATAGACTTCAGC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
TACCTGAACCAGATTG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CCTATGAATGTTACGC	ref_5055_RC	11	20	12	13	16	9	21	16	26	8
TATGGCCCTGTCCAAC	ref_5055_RC	98	103	127	106	92	109	93	68	120	96
CGTTCGTAATGCAAGC	ref_5055_RC	9	9	10	11	3	8	11	10	8	10
TCATCTCACGGGCCTA	ref_5055_RC	83	86	86	80	57	76	73	76	74	85
TCGCTAATGTTCAAGG	ref_5055_RC	2	3	5	2	6	3	2	5	4	9
AGTACACGGTGTGCTG	ref_5055_RC	111	149	113	102	152	120	148	104	130	83
GTTGCGATCTGCATTC	ref_5055_RC	44	34	36	37	31	49	33	40	51	45
TTGCCTTGATAGTGTC	ref_5055_RC	40	26	30	36	31	17	22	18	45	22
ACACTTAGCGCCAGAA	ref_5055_RC	216	187	216	199	208	174	244	176	200	188
GTGCTGGCCGTTCCTT	ref_5055_RC	13	8	17	13	7	12	5	12	11	12
GGAGCAGGTAGGCATC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CGGCCTTTATAAATAG	ref_5055_RC	28	34	31	31	32	15	27	22	29	18
TACTAACGCGGTGAGT	alt_5055_RC	484	442	639	502	446	523	456	496	499	447
CAACGATTTCAACTCT	ref_5055_RC	10	2	9	2	10	6	11	9	4	12
GGTGAGTAGCCGAGGT	ref_5055_RC	447	383	580	513	405	450	412	457	455	437
CAATCCAACTCTCTGC	ref_5055_RC	101	130	131	125	107	115	104	110	112	91
AGACAGGACACACTTC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
AGTCTGATATTTTTGT	ref_5055_RC	68	64	90	62	68	67	52	67	67	71
GCTTGAGAGTTCTTAG	ref_5055_RC	5	5	11	5	5	4	1	5	9	7
ACGTCTGCTCCTTAAG	ref_5055_RC	14	17	16	9	13	13	18	11	12	21
TGCCTTTGGAGCTCAA	ref_5055_RC	26	31	35	39	31	31	42	25	23	25
AGGTCTTTGGGCAGCG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ACTTTCTTCATGTTTA	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CTCAGCACGCTTGAAC	ref_5055_RC	3	14	7	1	12	4	8	5	5	3
CGGCTGGATCTGCAGC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
GCAGATTTTCCTTGGT	alt_5055_RC	16	20	24	16	15	18	22	10	16	12
TGAAGAGTTGTATTCA	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
TCGTTGTTTTGGTCGT	ref_5055_RC	5	4	1	2	2	8	9	5	2	8
GTGGTTGGAATTCATG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CGTTGGCTCAGGCTGT	ref_5055_RC	8	8	10	3	7	5	9	5	11	5
TTTGAGACGGTCCGGT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ATACTTTGAACTCATT	ref_5055_RC	76	58	91	78	71	78	58	59	93	56
CTCTGAGGAGTACGTA	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CTCCTGCATATTGTTC	ref_5055_RC	25	35	31	26	40	35	41	21	49	33
TATCGTCGTCTCCCAG	ref_5055_RC	90	59	71	83	78	74	57	69	70	58
TGATGATATTATAGAA	ref_5055_RC	14	13	26	10	14	13	12	13	13	7
CAGCGATTTTTGCCGT	ref_5055_RC	28	37	37	43	29	25	30	33	36	38
TTTCTTGGTCACCGGG	ref_5055_RC	132	126	157	122	117	129	119	135	129	104
TAGTGTGTCTTACAGG	ref_5055_RC	15	20	22	15	17	16	15	12	22	8
TGATAGGTAGTCAGCT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ATGTTAAAGCCCCTTT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ATATTAGTGTGCACAG	alt_5055_RC	146	189	210	148	225	149	203	156	194	147
ATATCATTGGATAAGG	ref_5055_RC	114	104	142	130	101	119	121	100	123	95
TTGTAGTGCACTCTGG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
TGCTTAGCTAGGCCCG	ref_5055_RC	374	373	435	409	376	382	384	401	441	387
ATCGGTATTCCGACAC	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CCCGTCTTGCGCTGTG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
GTTACGTCCCTTGATG	ref_5055_RC	151	166	211	165	190	182	168	191	196	137
TTATTCGGTCGCGAGT	ref_5055_RC	10	10	4	14	24	7	7	8	4	4
GCGCCTCATCTCGCGG	ref_5055_RC	44	31	50	41	41	44	36	47	29	52
ACCTCTGTATTAATAT	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
CCGGTTTGATACAATG	ref_5055_RC	0	0	0	0	0	0	0	0	0	0
ACCACTACGTATCCGG	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
GCGTTAGGTCTGGTGA	ref_2272_RC	72	132	87	91	128	64	139	65	155	57
CATCTCTGCAAATTGA	ref_2272_RC	17	22	18	14	28	8	28	10	34	10
TCTCCGAAGAGCCGGG	ref_2272_RC	8	13	16	3	14	14	21	2	22	15
TCCAGCCGGCGCCAGT	ref_2272_RC	4	15	11	4	20	9	18	8	22	7
AAGTTAATTTCCTCGT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TCGTACCGGGGCTAGG	ref_2272_RC	17	32	29	26	42	22	40	23	33	21
ACTACCAAACAAGAGG	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
ATCAGGACCATACAAG	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TCTTATGCCAGAGTTT	ref_2272_RC	8	10	4	14	15	15	24	9	20	9
GTGTCGCCGTAACGTA	ref_2272_RC	0	10	2	1	3	6	5	1	7	3
ACGCCAACTAATGCGA	ref_2272_RC	58	73	53	55	79	35	94	53	71	43
TAGCTTTCGCTGTTTG	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
CCTGTCAGTTTAGTCT	ref_2272_RC	1	17	9	5	9	6	12	5	16	1
CGGACCGGGGGCCGAA	ref_2272_RC	41	75	59	58	75	46	86	49	72	49
TGCCCAAGGCATGGTA	ref_2272_RC	11	19	19	11	15	10	34	12	21	7
TTACTTATGTGTGGCA	ref_2272_RC	32	50	25	20	46	17	51	18	53	17
CTGTGCCTTCCAGGTC	ref_2272_RC	24	50	22	21	44	18	41	18	40	13
TCACCAGCGCTGATCT	ref_2272_RC	4	2	2	1	4	7	5	6	4	2
ATCTGTAAGGAGATCT	ref_2272_RC	21	26	16	15	14	20	17	19	22	11
ACATCATCACAGGATA	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
AAGTCATCAGTGATGT	ref_2272_RC	6	15	10	10	10	9	13	6	11	8
TCATGGCTTTATCCTT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
CGAGGTGTCCTCAGCT	ref_2272_RC	7	19	11	12	12	11	17	6	24	9
AAAGGCTATTTTACTA	ref_2272_RC	6	12	7	10	15	11	7	7	26	10
GTTTTTTCCGGATATC	ref_2272_RC	16	34	17	16	28	32	42	18	23	16
GGTAGAGGATATTCCT	ref_2272_RC	20	24	10	26	36	30	46	19	36	29
AATCCAAGAGGACGCC	ref_2272_RC	20	22	20	17	24	8	26	26	41	17
TGACTCATCAGGGCGG	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
AGCTCAAAAATGTAAT	ref_2272_RC	18	26	14	24	26	12	22	9	24	9
TGGGTACGTTACCCTA	ref_2272_RC	28	56	40	37	58	23	75	22	60	37
TAGCATTTAATGCATA	ref_2272_RC	13	45	19	17	41	17	42	13	49	14
GGGTGGTACTTATTCT	ref_2272_RC	56	67	51	54	68	29	68	46	72	37
GATCTCACTTGTCCGC	ref_2272_RC	4	20	4	4	14	4	13	9	12	2
TCTTACGGACGCTTAA	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
CTGTCGCTTCGCCTGC	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
ATCTCCTCAGTTTGAG	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TGCCTCCGCCTTACCC	ref_2272_RC	27	54	27	19	45	28	55	28	51	23
TCTGTTGTCTTCGCTT	ref_2272_RC	18	27	21	15	24	18	24	14	34	12
TGGGTTTTGCAATTAA	ref_2272_RC	13	21	21	23	25	23	25	23	34	20
AGCTTTCATATGTTTT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TGTGGCGACTATACTT	alt_2272_RC	58	116	57	62	122	58	126	58	127	50
GAGTAAAGTCCCTTCT	ref_2272_RC	44	49	50	44	76	33	87	34	74	28
CAACCTGGCTGTCTGC	ref_2272_RC	0	2	0	1	0	2	0	4	4	0
CCAACTAGCTTCTAAA	ref_2272_RC	15	17	9	12	18	13	15	7	20	12
CCCGTGAGCCTTCGGC	ref_2272_RC	70	146	79	75	141	81	140	72	162	48
CTTGTCCCCCAATGTA	ref_2272_RC	3	14	2	5	24	3	9	4	5	3
CGAAACGGGCGATCTT	ref_2272_RC	5	7	4	1	4	6	7	2	8	2
TAGTATTTTTCAATAT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TAATAGGCGTAATGGT	ref_2272_RC	1	7	4	5	5	2	8	4	8	4
GAATGGATACTCGCGG	ref_2272_RC	8	14	10	8	8	14	10	9	11	10
TGCGAGCCAGTGTGAA	ref_2272_RC	50	85	66	43	94	51	96	51	86	30
AGTTTGAGTTCAATCC	ref_2272_RC	13	53	39	44	52	20	51	20	62	26
CTAGACAAACTGCCGG	ref_2272_RC	19	36	28	17	50	20	47	17	46	14
CTTTACCGTTCTCTTT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TGTCATTGAAGACACC	ref_2272_RC	19	34	24	21	39	19	27	15	32	12
AATTCCGTTATCAATC	ref_2272_RC	20	46	31	26	51	24	34	10	52	13
TTAGGACCATGTAACA	ref_2272_RC	34	38	29	31	56	37	57	28	62	44
GGTGCGGTGTTGTGAT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
GATTTCATCGGCTGTA	ref_2272_RC	20	26	27	28	27	11	34	10	25	18
CTGGCTGGGAATTCAT	ref_2272_RC	16	24	13	6	27	13	25	9	22	10
GGCTACGTGATCGTCG	ref_2272_RC	38	57	58	45	48	38	52	34	64	35
AGTCAACATATCTTTG	ref_2272_RC	14	18	11	20	17	8	16	7	15	8
TGTGATTATCGTTTTG	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TTTGAATAACTTGCTG	ref_2272_RC	44	71	68	33	96	40	94	46	82	43
GTTAGTAACGTGTTCT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
CTCAATTCACAGTACA	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
ACTTCTTTCTTCTAAC	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
CAGACAATCCGGTCCA	ref_2272_RC	43	57	43	39	56	38	74	43	54	36
ACTACCGGATCTGTTT	ref_2272_RC	42	64	45	43	58	37	59	18	62	41
GTTGAAATAGAGGCGC	ref_2272_RC	16	16	13	14	20	15	27	10	28	24
CACATCGGGACTTAGC	alt_2272_RC	29	58	37	33	57	33	57	32	74	41
TACTGTTTGTAAACCC	ref_2272_RC	5	11	10	4	9	5	11	4	11	9
TCACGCCTGGTTTTCA	ref_2272_RC	49	72	61	65	109	56	84	46	105	41
AATTCGCCTTGCAGTT	ref_2272_RC	45	62	55	60	68	43	71	57	80	49
TTGTCTTAGATTCGGA	ref_2272_RC	3	17	7	8	9	6	6	9	20	6
TCGGTCAACCCAACTA	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGTTAATCGTAC	ref_2272_RC	0	0	0	0	3	1	1	0	1	1
TGTGTGAAGGCTTCTT	ref_2272_RC	0	0	0	0	0	0	0	0	0	0
TTGGGGCGCCGCTTGT	ref_2272_RC	7	4	8	2	8	2	7	6	11	1
TCAATGGAGAGATAAC	ref_378_RC	78	46	95	74	47	78	60	77	45	73
CTGCACGACGCCATAC	ref_378_RC	115	50	93	99	63	78	71	76	82	92
TCATTCGTTCAACATA	ref_378_RC	59	42	79	60	33	52	50	51	60	66
CGATAATGGTCGTATC	ref_378_RC	88	48	99	62	54	79	41	72	54	67
TTGGATGTATTTCCTC	ref_378_RC	27	15	28	22	19	16	8	23	17	32
TCAATCCTTATGCATG	ref_378_RC	43	38	40	37	28	43	47	28	33	48
CGTGGTCTTGGGTAGC	ref_378_RC	24	21	31	24	22	35	14	30	27	28
CCGATGAAACAACTCG	alt_378_RC	965	541	1085	1007	570	887	522	876	527	874
ACGGCAGAGACTCGCC	ref_378_RC	56	27	56	56	31	47	31	59	37	53
CGCGCTGCGACTGTTC	ref_378_RC	26	20	34	28	13	29	27	16	23	26
GTAGCCGTTGTAATTA	ref_378_RC	65	51	70	63	39	51	43	67	56	55
TGTGCGGCGCCACTCG	ref_378_RC	108	77	128	144	59	92	92	99	83	101
TCGATTTTGAGGGAGG	ref_378_RC	191	125	221	188	120	166	146	174	119	158
ATTTGGTAGGTATGGT	ref_378_RC	0	0	0	0	0	0	0	0	0	0
GTCCGACTGGTGCAAC	ref_378_RC	63	42	83	60	50	53	43	64	50	50
CCATTGTTGTCTATAT	ref_378_RC	2	4	3	3	4	0	0	1	6	2
AGGGTCCGCTATTTGC	ref_378_RC	51	26	51	47	29	31	30	46	31	40
TCGCCGGTGTAGAAAA	ref_378_RC	4	7	8	10	5	10	15	13	10	10
CCAACATAGTTCAATA	ref_378_RC	7	5	12	16	3	6	8	4	3	9
ACGCTACACTATAACA	ref_378_RC	74	71	117	94	65	93	78	75	66	95
ATAGCAACGCGCGGCT	ref_378_RC	19	14	27	23	11	13	18	19	26	20
GATTGTCGGTCTGCGT	ref_378_RC	71	34	71	79	52	57	41	64	49	70
GGCTATTGCTAATCAA	ref_378_RC	215	164	297	207	158	228	176	214	166	202
GACTTTCACTCGGGGT	ref_378_RC	58	45	82	79	32	62	38	70	48	60
ATCAGATCACTTCGTG	ref_378_RC	0	0	0	0	0	0	0	0	0	0
CGGCTCTCCCCGGATA	ref_378_RC	3	13	7	7	8	4	12	3	10	3
CTGCACCTACGATTAT	ref_378_RC	73	60	94	100	63	82	90	84	57	83
ACATTTCTAGAACAGT	ref_378_RC	0	0	0	0	0	0	0	0	0	0
ACCCTTACTTTTAGGG	ref_378_RC	0	0	0	0	0	0	0	0	0	0
TTCATGTGTATAGCCC	ref_378_RC	21	2	24	24	5	16	7	18	12	17
CTAACTTGCCACCCGA	ref_378_RC	0	0	0	0	0	0	0	0	0	0
TGGTGGCGGCTATGTG	ref_378_RC	20	20	47	34	15	34	21	34	21	28
CCCCAGCAGAGCGGTC	ref_378_RC	23	11	32	25	14	15	15	15	16	22
TTGGTCTGGGTTCACT	ref_378_RC	0	0	0	0	0	0	0	0	0	0
AGCAGTATGGTACACT	ref_378_RC	88	61	96	58	49	74	79	69	44	64
TTCTGTCTGGACTGCG	ref_378_RC	173	94	180	141	90	145	103	115	100	141
TTGCCTGGGTTCGGTC	ref_378_RC	38	24	53	48	32	38	30	29	17	27
TAAGGGATGGATTATA	ref_378_RC	0	0	0	0	0	0	0	0	0	0
TTTTACAGTGATGTAG	ref_378_RC	15	7	13	14	18	11	9	16	10	12
GGTCTACGCATGTCTA	ref_378_RC	89	45	108	99	46	111	69	76	66	89
GATGTGCGCTGGCCAA	ref_378_RC	20	16	36	17	9	19	14	23	9	18
AAATCCAGCTAAAGTA	ref_378_RC	46	26	47	54	31	41	29	35	40	36
AGCATTTGAGAGTGCA	ref_378_RC	149	123	167	169	147	166	137	145	128	141
CGATTCTTCGGGCGCG	alt_378_RC	74	34	87	75	40	67	17	46	42	62
ACCATAATAAATTAGG	ref_378_RC	33	32	36	35	43	40	28	31	43	36
GGCCTGTCTACTTAGT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CATTGTTTCGATATGC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TGTAATTAAGTAACTA	alt_556_RC	6	1	11	5	5	5	4	3	4	3
ACTATGTCGGGTGGCC	alt_556_RC	16	40	40	34	45	24	36	33	34	39
TAATTTGTAGAGCAGG	alt_556_RC	68	46	62	51	74	54	58	60	74	64
CCCCATCCATTGCTGG	alt_556_RC	51	60	58	47	56	42	73	46	59	47
GCACCGGGATTACCAG	alt_556_RC	13	18	12	15	15	10	16	20	16	10
CTGTACACTTCTTTTT	alt_556_RC	45	62	50	43	78	47	77	61	86	44
CTCTGACTGTCTTCGT	alt_556_RC	5	15	7	10	14	12	15	5	15	10
TTGAGTCATCGTATTG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GCCAGTTCATTCCGCA	alt_556_RC	25	32	25	33	24	34	37	26	25	23
GGCTTTTACAACTCTA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
AACGTATGCCTAGGAG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
ACAGCGCATTCTTAGT	alt_556_RC	87	106	113	100	99	91	129	109	126	76
CTACTAATGGGAAGGG	alt_556_RC	11	7	9	10	12	4	6	4	4	12
GTTCAATGATATGACC	alt_556_RC	34	49	46	49	38	24	46	23	67	25
ACTATTCGTGGTCCTT	alt_556_RC	7	9	8	2	12	3	14	8	13	7
ACTACGTGTAAATTCT	alt_556_RC	158	178	194	160	149	159	183	134	158	142
AACTGATCACTACGAA	alt_556_RC	36	37	40	39	40	19	59	34	58	33
TGTCTGTCTAGACCTT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TATTGTACATGTTATA	alt_556_RC	11	24	11	12	12	13	29	12	19	2
GAGACTCCAGAGCTCG	alt_556_RC	21	29	41	23	25	21	25	30	37	28
TCGTTCTAATAATGGG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GCGGCAGGTTCTTCCT	alt_556_RC	6	10	10	2	11	10	6	6	10	3
CTCTTTCTCAGTCTAG	alt_556_RC	59	75	67	53	94	74	107	55	92	66
CCGCCGGTAAGTTATT	alt_556_RC	18	19	16	17	17	21	24	20	29	13
GTACGTTAAGTATGAT	alt_556_RC	41	45	53	34	58	33	50	25	69	26
ACCCTGGACCGTTTAA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CCGAACACAAATGGAT	alt_556_RC	8	20	18	12	21	10	17	9	15	9
TTCGCATTGGGAAGGC	alt_556_RC	12	15	21	18	17	10	26	31	28	9
ACTTGCTGTAAAGTTG	alt_556_RC	2	4	10	1	4	5	2	1	3	3
CTTTCTGGGAAAATCA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TTGCGATACAAATGAA	alt_556_RC	19	39	32	29	21	18	28	22	31	21
TTTTCCTTATTTAAAA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
AGCCTTTAGCTCCCGC	alt_556_RC	49	48	51	52	62	52	62	46	82	52
CGACCAGCTGAGCTCT	alt_556_RC	26	26	41	26	49	33	45	21	30	29
CCCTTAAATGAGCCTG	alt_556_RC	39	53	59	38	54	38	52	42	55	35
GGGGAAGATGATGGCT	alt_556_RC	9	5	12	11	10	7	8	6	7	2
GTGAATGATTTCTAGC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CGTTTCATCAAGAGGC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TGATCCTAGTTAGTAC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
ACGACCAGCTGTTATC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
AAAGCAGGTCCCCAGA	alt_556_RC	24	34	28	31	27	19	23	18	26	22
TCGGGTATTTCTACAG	alt_556_RC	61	77	99	73	80	66	76	72	82	70
GGTCCTCTATCGCTAG	alt_556_RC	29	29	23	32	30	30	34	24	33	28
CTACCCTGTGAAGCCG	alt_556_RC	45	55	49	50	30	51	39	54	35	35
TTTCTTCATGTTTTGT	alt_556_RC	11	7	7	7	1	3	2	4	9	5
ATTGTTGTGAACGTTG	alt_556_RC	80	71	86	72	75	72	81	65	91	64
CATGAGAGTGATGCAC	alt_556_RC	36	48	44	29	46	38	59	35	48	38
GGGACTTCGCAGGGTT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GCTTAATAATCAACTC	alt_556_RC	3	5	6	6	7	2	4	7	4	3
ACAATGGAATGGTTGC	alt_556_RC	14	13	16	14	25	11	13	12	14	9
TCTATTATGTGTTCTG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TAGGTTTCGTCTTTTC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CGTATGTATTCAATGC	alt_556_RC	60	36	56	53	56	55	50	36	56	62
GTTCTGTGGTCTTATG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GCTTTTAATTGGACCG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GGAGAGTTTCGGGCTT	alt_556_RC	42	50	43	33	42	52	54	52	49	32
TTTAAGCCTCAAAAGC	alt_556_RC	75	65	92	80	75	75	61	67	77	60
CTGTTAGACACGCCTG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GTAACGTAACACTACT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TATCGGTCTGTTTTTG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TCACTTAGGGAAATCA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GGGCAGTTTTGAGAAC	alt_556_RC	38	42	35	29	50	34	49	29	57	28
TGCTTTTTCAACGAGT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CACAGCCGGCTTTCCG	alt_556_RC	10	21	16	16	14	12	23	5	30	7
TCGCGCCGTCACCAGA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TCGTATTCCTCCCTAT	alt_556_RC	28	33	36	28	44	29	41	18	49	29
GCAGGCGCACTTGAAA	alt_556_RC	26	37	28	47	31	37	39	21	45	35
CACGTAACTACAAATG	alt_556_RC	40	68	66	59	71	57	58	37	60	63
GAGATATGCGATCCCT	alt_556_RC	105	148	130	129	125	125	152	111	156	87
GTTTCATAGGCTGTTG	alt_556_RC	33	18	19	24	36	23	34	25	25	26
AGTGGAGTCAGCGTAC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GGTGCTCTGCAGGGGT	alt_556_RC	40	33	29	30	43	30	34	38	48	39
GTTCTTGTTAACGATA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
AATGCCATCGTGCAGT	alt_556_RC	1	4	1	1	0	1	2	4	2	1
GGTTTGGTCCTTGTCG	alt_556_RC	28	30	50	35	46	26	32	38	34	32
GACGGGCCTAGGAGCT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CGCCAATAAACTAGGC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TACTACGAAATATTTT	alt_556_RC	28	26	40	29	39	31	43	32	29	41
CACGTTCCTATATTTA	alt_556_RC	2	3	3	3	0	0	4	0	0	3
CGCAATGAATGGCTCT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TTCCTTGCAATGTTCC	alt_556_RC	12	21	15	10	15	8	15	8	9	9
GTTACAGGGCGCTAAT	alt_556_RC	6	12	10	6	13	4	9	9	14	8
CTACCTGCAGGAGCCG	alt_556_RC	2	5	0	0	2	3	0	2	0	0
CTGTGCCCGAAGCCGC	alt_556_RC	55	65	80	87	69	51	62	51	45	61
GTTTCTGTTGATGTGG	alt_556_RC	31	65	64	57	76	42	73	45	76	39
TAGTTCCGGCCACAAT	alt_556_RC	17	27	26	24	28	18	33	17	31	19
ATGGCAGTTTGATGAA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GGATATGACCAAGCGG	alt_556_RC	87	104	116	84	107	83	93	69	85	86
TCCTTCTTTTTTACGG	alt_556_RC	7	14	9	11	17	12	12	11	10	15
TTAAGTTAATGCGACC	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CCTCCATAGACGGGTC	alt_556_RC	15	30	21	18	39	18	38	8	24	20
TAGCTACGATCTCACT	alt_556_RC	18	23	22	20	20	15	34	19	20	16
CATCGTGAATTCGCGC	alt_556_RC	53	64	63	48	63	44	59	59	64	37
TACGGCCGACGAGACC	alt_556_RC	27	18	29	23	24	18	32	17	31	22
ACAATCATGCTGGTAG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TGCAAGTCTCGTGCTT	alt_556_RC	29	35	52	24	35	24	36	22	35	26
GAGGTGATGGTTTTCC	alt_556_RC	4	23	17	13	10	9	16	5	16	10
TTTCGTACGGAATGGC	alt_556_RC	75	93	101	89	88	70	85	90	100	52
ATTCTCGGCTATGCGG	alt_556_RC	5	8	4	13	12	7	8	3	14	8
GTCGTCTAGAACAGTT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GCTTAACTCGACAAAA	alt_556_RC	24	23	22	25	19	13	23	16	20	18
AGTACCGTACCTGCAG	alt_556_RC	7	10	10	9	9	4	14	9	21	10
GATGAATAGTTGTCAG	alt_556_RC	34	49	42	45	51	44	54	37	44	31
AAGATTCGCCTACGTT	alt_556_RC	13	15	13	11	11	8	19	10	14	12
CCGGCCGAGAACTTTG	alt_556_RC	18	113	27	18	117	25	136	16	118	18
TGTGGTCGACTCCCCA	alt_556_RC	52	100	71	45	79	49	79	55	108	42
TACGGCGTGACGGCCT	alt_556_RC	21	24	21	22	24	16	24	24	27	17
TGCTACATCTTGTATA	alt_556_RC	28	39	35	40	44	40	59	33	47	25
ATGCCGGACTATATTT	alt_556_RC	29	26	47	29	42	26	25	44	40	31
CTCATCCGTGAGCTCG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
CAAGTAGGGGTCTCGT	alt_556_RC	25	24	31	26	27	25	35	28	32	32
AATAATTTTTGAGTAT	alt_556_RC	0	0	0	0	0	0	0	0	0	0
ACGTACCGTTTGTCGC	alt_556_RC	28	36	36	30	41	38	46	26	47	28
CAAACCGTCTGGCCTC	alt_556_RC	3	4	0	0	1	1	1	0	3	0
TCAGCGCTCTTTCAAG	alt_556_RC	24	35	19	24	26	27	19	21	27	15
TCACACTACTCGCGCT	alt_556_RC	11	5	5	2	8	3	7	6	6	2
ATTTATACGTGCGCCA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
AGAGATTTAACGGCGA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
AAATAATAATCGTGAA	alt_556_RC	2	5	5	4	1	1	4	5	6	3
TGCTTAGTTTGGGCCT	alt_556_RC	18	28	28	25	23	18	24	16	29	33
CGGATCCCACAAGCCT	alt_556_RC	18	31	43	24	33	21	30	27	39	38
ATGTTGAAACATGGCG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
TCCTCAATGAACCATA	alt_556_RC	146	130	198	190	129	156	127	148	118	157
TAAGTAATTTACGGGT	alt_556_RC	19	19	24	12	12	16	18	15	17	11
TTTGGAATGGAGATGC	alt_556_RC	122	127	144	122	153	156	168	120	141	115
ATACGGGGATCCAGAT	alt_556_RC	21	27	37	26	36	34	27	29	25	18
GGGATACGTACTTCTG	alt_556_RC	6	4	6	11	7	10	7	9	18	9
TCTATCCAATCTAAGC	alt_556_RC	2	16	6	6	10	9	13	9	7	10
GTGATAGGCTTCTGTA	alt_556_RC	0	0	0	0	0	0	0	0	0	0
AAAGGTCCGTTTTAAG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GCGTCATGTGTCACTA	alt_556_RC	19	10	9	10	18	16	13	17	19	14
AAGTCCTGAACAGAAT	alt_556_RC	24	30	32	25	33	29	39	36	35	17
AACGGGCGCCGTAAAT	alt_556_RC	15	19	14	14	14	12	14	19	18	17
CATGTTATGGCATTGT	alt_556_RC	33	32	30	19	28	21	25	19	27	27
TTTATCCGTGCTCGAC	alt_556_RC	17	14	9	10	13	16	13	4	22	5
ATATGTACCTCTCTAT	alt_556_RC	21	11	17	23	22	15	19	13	28	13
AATTTTATCTCGGACT	alt_556_RC	17	19	20	20	10	12	20	23	24	15
CTGTGAAAAGCCCTAG	alt_556_RC	0	0	0	0	0	0	0	0	0	0
GCTGTTCTTTTTCCAG	alt_556_RC	13	18	18	9	16	7	28	14	12	19
GTCACAGATGAGTGCC	alt_5032_upstream	4	10	14	5	3	11	7	11	12	11
TTGGAGGCGTCGGCCC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTAGCTTTTCATTGGT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGCACCTTCACCTCTG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTTGGCTTATCTT	alt_5032_upstream	56	64	86	56	54	61	65	51	79	62
TTATCACTTGCATACT	alt_5032_upstream	15	18	17	20	18	21	18	21	19	16
AATTGAACGCTGACGT	alt_5032_upstream	15	15	28	24	9	14	18	18	26	15
CGCCGATCGGTAAACG	alt_5032_upstream	14	16	11	15	22	9	22	10	10	9
TCCAAGGTCAGATGAG	alt_5032_upstream	32	43	58	34	49	33	43	40	37	30
ATTAGTTAAGTATATA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGGCCAGGACAGT	alt_5032_upstream	119	102	161	176	123	158	143	145	136	114
GGATTCACCCCGTCTT	alt_5032_upstream	9	31	16	10	40	14	34	16	32	9
CGTTCGCTCATCCCTT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GATGTGGCATTTTGCC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCCCTATTGAGGT	alt_5032_upstream	47	71	58	20	65	37	77	44	72	36
TAAATTCGGCGGTATT	alt_5032_upstream	34	36	53	50	36	49	56	32	44	61
GCTTCCACAAGGATGT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGTTCTTAGTAAT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGTCAGCTTCAAG	alt_5032_upstream	28	16	25	35	27	24	22	24	18	19
GAACGATCAGGAGGAC	alt_5032_upstream	0	0	0	0	1	0	1	0	0	0
CTGGGCTCTGTGGGCG	alt_5032_upstream	61	58	83	55	65	67	67	63	56	63
GATACCACGTATTTCA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCAATAAGTGTTGTTG	alt_5032_upstream	134	123	160	98	137	99	145	122	154	84
TGGTCAATTAGGGCGC	alt_5032_upstream	49	38	66	66	37	60	55	64	37	48
CAATACCACCCTTCTG	alt_5032_upstream	110	101	117	130	103	103	124	106	116	99
AGTAGTCACCGGGGAT	alt_5032_upstream	40	35	45	32	44	37	48	44	43	42
ATCCTTACAGTCATAC	alt_5032_upstream	14	23	20	29	27	28	27	11	21	12
CGTCTCCGGGGCCGTC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CGTACTGTGCAGATCT	alt_5032_upstream	6	17	15	25	19	16	27	12	25	19
ATTACGATAAGGGAGC	alt_5032_upstream	150	103	171	121	119	136	135	137	134	118
GCGCCGCTTATATCTG	alt_5032_upstream	2	6	11	6	3	5	3	8	4	4
ATATGAACCTCATTTG	alt_5032_upstream	59	39	58	57	51	53	46	61	46	44
GTAGGTTTCGCTCTAC	alt_5032_upstream	29	31	42	52	28	24	23	23	39	20
TCGTTTCACTTGTGAC	alt_5032_upstream	75	50	79	58	47	55	56	58	59	69
ATTGTTCTCCTCATAA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
AGAAGGACTTTGGCTT	alt_5032_upstream	7	2	8	5	5	9	6	10	5	11
TTAGTGTGCGAATACG	alt_5032_upstream	19	17	26	14	19	19	24	24	21	19
TATTGTTATTACTTGT	alt_5032_upstream	28	17	34	33	29	39	32	32	27	36
TAAGGCACTACATCTG	alt_5032_upstream	76	76	109	75	60	98	89	71	88	69
ATCCGCGCGTTTGTGT	alt_5032_upstream	16	11	14	14	14	13	16	11	14	13
TTAGTACTAACGCCGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGATGCGTCCCGG	alt_5032_upstream	28	17	35	25	18	26	25	24	16	37
TAGGATACAAATATTT	alt_5032_upstream	22	19	29	24	9	20	15	16	16	19
CCAGTATCCGACCTTC	alt_5032_upstream	40	28	50	32	27	15	28	32	39	30
TTGATGGGATGAGGTG	alt_5032_upstream	30	30	43	32	32	32	27	25	19	27
GTAGTACACGCGGATT	alt_5032_upstream	45	52	74	53	62	52	50	60	52	41
CGCATAGGTTTCTTAC	alt_5032_upstream	33	62	47	30	67	46	79	38	66	33
ATCCCGTACAGACAGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CGATGCCCAACCCTTC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCGCAGATACATATTG	alt_5032_upstream	43	44	47	57	34	33	48	39	50	25
TCCGGTTTGATGTCTT	alt_5032_upstream	41	31	51	57	26	38	33	37	29	39
GTTCCCCTAGGCCCTC	alt_5032_upstream	11	12	32	24	17	19	20	18	25	20
TATAACGGCTCGTATG	alt_5032_upstream	64	48	61	50	34	41	34	35	39	50
CAGGGTGTTAAGGGAA	alt_5032_upstream	10	24	32	12	15	16	22	23	24	20
GGTGTCGTAATTCCAA	alt_5032_upstream	44	26	46	45	38	36	36	41	27	29
CCTGCATTCGAATTAC	alt_5032_upstream	24	18	19	18	17	21	20	19	25	25
TTACGATTGGAGTGAC	alt_5032_upstream	39	48	70	59	38	48	39	38	53	48
CAGTTCAAGTTCATCG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTGTTCGAATTT	alt_5032_upstream	22	27	41	34	26	26	22	17	28	23
GTGAAATTCCAATATT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCTTACCTTTTTTCAC	alt_5032_upstream	8	22	11	9	22	7	17	4	25	5
GACGTAAGGACCAGCC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GACGTTTGGCCTGCAG	alt_5032_upstream	13	10	5	11	7	12	13	10	8	16
TTATAACGCGATACTA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTCGTGCTTTATT	alt_5032_upstream	26	17	23	16	14	17	19	23	22	15
TGTTTATTTCGGGATT	alt_5032_upstream	29	20	44	27	21	26	21	32	35	29
GAGGTTGTCGGAAAAG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CACTGCATGTCGTGGA	alt_5032_upstream	95	64	118	78	62	66	70	77	69	79
GTCTTTTTTGTCACTT	alt_5032_upstream	18	24	25	24	18	17	28	16	31	17
TGACCTAATTGTGCAC	alt_5032_upstream	27	23	25	19	32	24	28	19	24	22
AATTGTCTTTAGTAAT	alt_5032_upstream	25	24	31	42	31	29	24	32	34	33
TTTCTAGCACTGAGGA	alt_5032_upstream	68	75	69	64	43	83	54	61	63	67
CAGGTGCTCAGTCTCC	alt_5032_upstream	10	10	11	7	8	14	13	9	10	12
GCATCGTCGGTTGGGA	alt_5032_upstream	7	12	27	8	12	12	15	16	18	20
GCTAGAGTGAGCCAGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTATCTCTTGCCT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCAATAAGTGATGTTG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGGTGTTCTGGCG	alt_5032_upstream	105	82	109	74	87	91	73	80	89	94
ACCTAGTATCAGTACG	alt_5032_upstream	52	47	69	46	59	47	43	53	43	46
GGATAGGGCTGCCTTA	alt_5032_upstream	64	38	78	47	43	69	57	69	47	52
TAAACACTTCTGGTAG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTCAAATTAATTC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GGTATCCGGCGGGTCT	alt_5032_upstream	30	34	41	50	43	39	49	37	31	49
GAGCATATTTATCAGT	alt_5032_upstream	22	19	35	17	21	14	22	20	20	24
ATGGCTAGGACCATTG	alt_5032_upstream	46	38	62	46	43	50	64	43	40	39
GTAAGTCGTCATCAGG	alt_5032_upstream	45	24	36	28	29	32	33	38	26	35
GACAATACCTTCGGCC	alt_5032_upstream	50	32	59	46	49	44	49	59	36	42
GTGTAGGGCGAATGTG	alt_5032_upstream	43	48	61	66	45	54	52	54	61	45
CATCCTGACTCGGGCC	alt_5032_upstream	8	9	6	11	4	8	8	6	4	9
TTTAATATAGTCGCGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTCAAGCATGGCT	alt_5032_upstream	60	48	82	65	55	69	50	52	48	64
AGTTTTTAGATCTAAT	alt_5032_upstream	2	2	1	3	0	2	1	1	1	0
TAAAGCTGATCTTCAC	alt_5032_upstream	55	45	71	72	36	50	37	55	54	46
CAATTTTAGACGCCAA	alt_5032_upstream	6	9	6	6	6	3	2	3	4	8
CACTAATGCTAGTGTG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCTAAACTAACACTTC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CATTTCATTGTTTTAA	alt_5032_upstream	7	7	5	10	10	13	8	8	4	11
GACTAGCGGGTATTCT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCCTGAGTAAGGA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTGTGCATGCGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCCCTCCTCTGT	alt_5032_upstream	6	5	3	2	10	4	6	3	8	3
TCCACGCGTTTGTATC	alt_5032_upstream	50	70	66	59	65	45	47	61	66	41
CGCCTATTCTTGAGAG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTCTTTACTGTAT	alt_5032_upstream	11	12	17	14	12	13	14	13	14	12
TGTGTTATGGTCCGAT	alt_5032_upstream	84	61	76	71	60	92	71	63	60	53
TAATGGGGCACTCAGT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGATTTCTCAGAT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GGTTATATTGGCTCGG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TACTTTTTTCCACCGT	alt_5032_upstream	62	72	64	60	49	54	61	60	57	35
TACCTACACTGTAGTA	alt_5032_upstream	16	22	23	30	22	7	18	21	18	15
CAGACCTGTCGGGATA	alt_5032_upstream	25	32	27	19	22	22	24	19	28	15
GTGTATTCAAGTCAAA	alt_5032_upstream	22	21	23	11	30	30	20	22	28	15
AACAGATCATCAGGAC	alt_5032_upstream	27	17	25	16	14	22	16	12	14	9
CGCTGGACCGGAGACG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GTACGGCATCACAGTT	alt_5032_upstream	97	95	136	86	90	106	83	84	102	92
GATGCATGGTGTCCTT	alt_5032_upstream	96	60	103	87	60	89	81	76	67	63
CCCATGATAAGTTGGT	alt_5032_upstream	10	7	7	5	7	7	8	8	11	3
CGAAACACATCCTATT	alt_5032_upstream	40	49	56	42	49	35	59	35	71	41
TTGGTGGTTGAAGCGA	alt_5032_upstream	19	12	25	15	13	19	17	16	15	20
TCCGGATGGCATCAGT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCCCAAGTCACACGGG	alt_5032_upstream	6	17	20	10	20	16	17	6	18	17
TCGCAAGATGGCTACC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
AATATCGGTGTTGATA	alt_5032_upstream	18	31	26	31	19	21	31	24	17	31
GTATGCACGCGAGTAG	alt_5032_upstream	108	75	128	86	88	107	91	88	74	77
TATCCAGTCTCAGGCA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAGCTCTATTTAC	alt_5032_upstream	10	10	27	17	12	25	12	18	19	15
AAAAACTTCACCGGGC	alt_5032_upstream	143	121	234	134	109	162	135	148	118	148
TCCTCCTAAATTTCTT	alt_5032_upstream	6	8	8	7	7	2	5	5	8	6
TTGGTCCCTTGGGGGT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTAGGATATTTGT	alt_5032_upstream	48	35	51	42	42	34	48	45	41	44
GTACATTTACGCTAGT	alt_5032_upstream	16	10	14	13	14	15	19	14	21	13
AGGAAAGTGGGCATTA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CGGATTGGTTTACTAT	alt_5032_upstream	28	19	39	32	27	28	16	28	16	17
TTGCCATTGGCCAACA	alt_5032_upstream	160	145	159	181	168	134	164	146	190	143
TCTACTTGTGTGTTTT	alt_5032_upstream	9	5	15	16	6	3	13	6	10	7
TGTTAAATATAATGAG	alt_5032_upstream	354	270	430	399	303	347	346	377	331	348
TTTAATCTTCGGAAAA	alt_5032_upstream	5	5	18	5	6	6	10	7	2	7
GCATAGTTTGTGCTTA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTAGTACACCTA	alt_5032_upstream	11	12	12	13	11	20	17	6	10	9
ACACCGGTGATCTAAT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
AGCATTTCTATGGTAC	alt_5032_upstream	131	122	135	127	115	117	93	106	131	97
TGAAGTCTATCGGGAC	alt_5032_upstream	105	62	99	83	88	75	85	95	76	63
GACATGCAACTCAGTC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTTGCATTACAC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTCCCAGAATGC	alt_5032_upstream	67	45	78	73	56	66	59	73	68	64
CCAAAATGAGGAGCCT	alt_5032_upstream	4	7	6	8	14	1	13	5	7	12
AGCTCGCAGACATGTG	alt_5032_upstream	4	2	3	4	11	3	4	9	7	3
CCATTCAGGGGCATCG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCCTTGTACGTCG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCATCTTCGATTCGTC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCGTAGCCACCTT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTGATTATTGTGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGGGACCATATAC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTAAGTATTGTTG	alt_5032_upstream	58	62	75	69	68	65	73	66	71	57
GCAAAACAAACTTGCC	alt_5032_upstream	50	50	87	55	35	59	31	52	28	47
GCGGTTGGCTGAAGAC	alt_5032_upstream	1	9	1	1	3	1	6	1	7	0
TGCATTGGAATCCTTA	alt_5032_upstream	120	89	141	132	104	115	95	125	97	116
ATATTTAGGTCTCAAG	alt_5032_upstream	12	11	14	17	12	21	10	14	5	18
ACAGACTGCCAGGCAC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GATAACATCGGGGACG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCGCCCTTCCATT	alt_5032_upstream	168	219	227	195	193	198	209	187	223	163
CGGTCTTTATAACTTG	alt_5032_upstream	17	24	30	26	26	26	32	36	24	17
GCTTCCAGACTTCAAG	alt_5032_upstream	5	5	9	6	8	4	9	3	8	3
TTAGGGCACTACGATG	alt_5032_upstream	19	10	28	27	10	18	18	17	18	16
TGACGTCGCTATTGGG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCTCACCCTAATATTG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGTCCTTGAGGTG	alt_5032_upstream	60	66	80	43	31	63	68	34	51	55
TGCGGGCGCTGCGCAA	alt_5032_upstream	48	18	31	36	30	27	30	27	38	30
TAGGTCTCAGGGCAGT	alt_5032_upstream	7	7	10	4	4	7	4	11	3	7
GATTTTTCCTTTCTTA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGTTACCCAAGTG	alt_5032_upstream	34	54	37	32	28	30	36	36	43	39
AGTTTCACCTAATCCC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGACTGCTGCAGTGCG	alt_5032_upstream	8	7	8	5	9	7	6	2	3	9
CGTCGATTCTATATGC	alt_5032_upstream	13	13	14	15	21	7	16	16	11	10
CGACCGGCCTGTTTAT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTCGCCGACTCGA	alt_5032_upstream	95	76	116	87	71	103	73	91	87	57
TAATGCGACAGATTCG	alt_5032_upstream	12	6	7	8	7	15	7	5	3	12
GTGGAGTGCTCTTTGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTGATTTTGTGGG	alt_5032_upstream	52	47	59	58	43	37	41	49	46	31
TCGGGGTGCCATCGTA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTCCAGTGGTGC	alt_5032_upstream	48	67	76	36	54	53	56	52	64	52
ATACTTTGCTTCGTAA	alt_5032_upstream	50	52	86	56	53	62	38	53	46	68
CGGAGATGCGAACACC	alt_5032_upstream	7	3	3	2	4	3	4	2	4	1
TTTCTCACTTCGGGCT	alt_5032_upstream	15	16	18	18	17	13	7	6	8	14
TCGGGGTGCAGGAATC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGTGAGCCAGGGC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTCCTAGCTGTTG	alt_5032_upstream	13	10	12	13	11	14	13	14	9	18
CTGGGCGTTCTGATTC	alt_5032_upstream	11	11	12	7	9	13	6	9	9	9
GATCAAGTATCTCATA	alt_5032_upstream	21	26	33	23	13	19	17	27	21	21
ACCTTGTTGAACTGTG	alt_5032_upstream	35	33	35	33	44	32	35	30	24	29
TCTGCTCGAGGTCACC	alt_5032_upstream	41	27	35	41	51	30	50	37	50	45
CCCTTACCCTGCGTTC	alt_5032_upstream	69	85	85	92	118	73	74	76	83	94
TAGATTCGCCGCAGTC	alt_5032_upstream	13	2	9	3	12	12	5	11	6	9
GAAATGAAGTCTCGTA	alt_5032_upstream	16	3	16	16	9	11	14	10	9	12
TGTGTTTCATTGCACG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAGTACGTCTGTT	alt_5032_upstream	10	11	16	17	12	11	20	18	12	13
TCCTTAAAACTGTCTC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CGCACAGGCTTCTTGT	alt_5032_upstream	3	4	5	7	8	18	9	8	7	8
AAGCTTCTCCGACTGG	alt_5032_upstream	53	36	53	35	36	51	27	43	49	55
GTTAGCCGGGTCTCTC	alt_5032_upstream	29	31	31	39	40	28	26	31	24	26
GATCTCAGTTAGAATT	alt_5032_upstream	6	0	5	1	1	3	1	3	5	1
GCACCTTTGCAAAAGA	alt_5032_upstream	32	30	60	49	31	42	29	38	35	32
TGAATAGAGTGACTAT	alt_5032_upstream	34	41	35	31	23	42	50	42	38	34
GCGCAGCCTGGTTAGA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTGCGGTATTGCT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAACGTCAACGCT	alt_5032_upstream	1	3	5	2	2	4	6	2	4	6
AGCGATCCACTCTTAC	alt_5032_upstream	51	49	49	39	64	39	62	25	51	50
GGTCAATGGCCCTCCT	alt_5032_upstream	14	6	16	13	7	8	20	11	9	11
CCGTTTGGCTTGATGG	alt_5032_upstream	24	35	24	24	30	26	42	31	47	26
CGACATCCTGCCCTGC	alt_5032_upstream	10	6	8	8	3	2	3	2	5	5
CTAGTTGTCAGTCTAG	alt_5032_upstream	136	116	176	143	118	149	128	143	146	118
TATTTTTTCAGTTAGG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCATTTTATGCTA	alt_5032_upstream	7	11	20	9	9	14	18	15	15	16
CTTGCTGCAATTTTAC	alt_5032_upstream	47	26	66	40	53	57	43	59	46	60
TAGTCAAACTTCGCCT	alt_5032_upstream	88	69	99	95	75	77	61	68	89	61
CTCCGTATGAAGGCCC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAAGTATAGTCGT	alt_5032_upstream	45	33	48	38	41	31	51	36	33	29
CTGAGTCTTTGTGCCA	alt_5032_upstream	12	7	20	14	27	4	8	7	23	13
CTTAGGAGTAATGGGT	alt_5032_upstream	157	163	222	208	143	180	160	145	143	187
ATGTATTTCAATGATA	alt_5032_upstream	18	25	20	11	12	15	19	18	24	12
TATCTGGTGATAGTAA	alt_5032_upstream	28	16	37	26	18	21	19	28	31	27
ATTCGGCACTCAGCGT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCTTGGGTCTAGA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATAGCCATTGGT	alt_5032_upstream	22	31	37	34	31	33	29	22	34	22
ATTTCTCTGTTCGGTC	alt_5032_upstream	29	18	46	38	19	28	23	27	31	30
AACCTCGCATCAAGGT	alt_5032_upstream	127	133	175	148	133	133	138	157	140	124
GCAGGGTATCCGAATT	alt_5032_upstream	41	44	40	33	42	46	30	31	49	27
AACTGTACGGTTGCAT	alt_5032_upstream	2	1	0	2	3	0	0	0	0	2
GTTATTCTAGGGTTCA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCTGCGTACTTCC	alt_5032_upstream	52	41	71	56	43	42	38	53	54	54
TATACAATTGTCATAG	alt_5032_upstream	62	103	116	99	80	96	87	83	125	71
TCCTTTAAACTGTCTC	alt_5032_upstream	127	106	144	129	72	134	109	102	105	112
TACCAATTGCAATGGA	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTACGTCGAACTG	alt_5032_upstream	46	53	64	62	57	45	86	57	67	45
GCAAGAGCCGGTAACC	alt_5032_upstream	4	2	6	2	4	8	3	5	6	4
ATGTACGATTCATTCA	alt_5032_upstream	183	157	184	195	136	175	156	155	132	167
ATTTCGTAGCTCCGAA	alt_5032_upstream	24	21	17	21	11	24	16	15	22	20
CTCTGTCGATATTTTT	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
TGTAAGCCCGGGCCCG	alt_5032_upstream	26	19	31	19	17	15	24	19	22	20
ATCAGGATTTTTGGAC	alt_5032_upstream	4	6	15	14	9	12	11	8	9	6
TTCAGCGGTGTTTGCC	alt_5032_upstream	55	50	52	47	53	44	40	25	54	54
AATTGTAGTCGTCTCA	alt_5032_upstream	202	173	243	221	195	193	220	209	170	167
ATCTGCACGAGTGACC	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTCAGTCACACGC	alt_5032_upstream	13	16	13	13	33	11	26	14	25	5
GCCGCTTCAGGCCCGG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GAAAATTCTTGTTGGG	alt_5032_upstream	3	8	5	3	3	4	10	7	6	6
GGATTCCCCCCTGCTG	alt_5032_upstream	20	12	34	29	8	15	12	18	19	16
AGAAAGCTTAAGACAA	alt_5032_upstream	314	234	345	277	249	304	244	282	235	273
TCAGCGCACTCTGTTA	alt_5032_upstream	4	3	8	6	9	7	8	3	9	7
TTATCTTAGATCACGT	alt_5032_upstream	27	30	38	29	22	15	18	15	28	42
ACCTCATTATGTGTTT	alt_5032_upstream	25	28	24	20	28	22	21	26	25	20
TTCCGTTATGGTATTA	alt_5032_upstream	76	76	102	102	60	79	73	77	65	75
ATCGAGCAGCGCTTAG	alt_5032_upstream	0	0	0	0	0	0	0	0	0	0
GCCGCTTTGTTTCCTT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TAACCTGTCTAATTGA	alt_5614_new	20	49	39	38	39	33	58	19	38	18
TTTTAAGCTACTCGAC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GGTTCAGCCTAACAAA	alt_5614_new	1	13	4	4	5	2	6	5	10	1
AGCCCCTGAAATGCTC	ref_5614_new	28	31	33	29	30	27	40	20	49	27
TGGGTGCCCGTACGGT	alt_5614_new	103	119	100	101	136	107	132	91	152	91
GCCTCGGGCACATTGC	alt_5614_new	15	20	9	6	24	11	20	10	13	12
CCAAGGGGTCTTTGGC	alt_5614_new	55	66	55	60	81	47	70	40	99	47
CTAAGCGCCACAAGAG	alt_5614_new	50	69	54	51	81	57	91	50	72	48
GCGAGCCAAGTCGGTC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TTCTATGTGATACCCA	alt_5614_new	18	34	14	18	32	18	47	11	24	15
CCCCGTTCGCCCTACG	alt_5614_new	2	4	5	3	3	3	12	5	17	6
TCATCTGCACCTCCCC	alt_5614_new	0	3	3	4	6	2	5	1	12	4
TTCTAGGCCGTGTCAC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
ACCCTCGTTAGACGCC	alt_5614_new	10	38	10	7	39	15	39	9	41	5
CTTACGGGAGTCAGCG	alt_5614_new	5	2	7	6	3	3	11	4	6	4
GCTCGAGCAGTCTTGC	alt_5614_new	5	13	10	10	6	7	11	11	14	6
CTAACAGATCGTCTTC	alt_5614_new	109	123	104	99	115	84	123	86	112	64
TCCTAGATTAGCCTTG	alt_5614_new	6	28	3	6	11	8	17	5	18	8
GGCTCCAACACTCCCG	alt_5614_new	0	1	0	1	5	0	5	1	3	0
TGGCCTGCTATGTGCG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
AAACGGCAGAGGGTCG	alt_5614_new	5	3	2	10	11	8	7	7	6	6
ATTTTGGTCATCAGAG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
CTGACGGGGCCCTCGG	alt_5614_new	26	24	18	22	38	24	44	25	43	9
TTCTTCGTAAAGCATC	alt_5614_new	5	8	7	8	11	4	10	7	3	2
GTAGTGGGGCGCGACC	alt_5614_new	16	33	22	17	26	20	21	12	27	12
GGCCATGATCCTAGGA	alt_5614_new	17	29	21	15	24	17	35	9	31	18
GGACCGGGCCTTGTGC	alt_5614_new	13	38	16	25	34	14	44	12	47	18
CAGCATGAATAAAACC	alt_5614_new	27	59	30	47	66	26	70	32	65	24
TTCCTGTCTCGTGGCT	alt_5614_new	16	24	17	14	32	13	35	13	32	22
GGTGGGTCCAACTATT	alt_5614_new	10	18	13	11	14	10	11	14	13	7
GTTATTGCTGTTTATT	alt_5614_new	10	12	12	11	12	9	26	8	24	6
GGACCGGACGTTCGTA	alt_5614_new	19	28	11	15	35	18	26	18	27	10
GCTTTCATGAGGGCAA	alt_5614_new	12	17	11	12	14	10	17	17	21	6
TATGCTATTGTATTGG	alt_5614_new	13	17	11	17	28	18	35	9	35	10
ATACTGTATGCCTATA	alt_5614_new	44	86	55	50	75	34	81	33	72	39
TCGCAGTACTCACATG	alt_5614_new	11	27	12	8	42	13	29	14	41	12
TAATCACATATCTTGA	alt_5614_new	15	11	13	17	14	8	14	6	18	10
GGCCATATTCGGGGAG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GCATTTCACTTCCAGG	alt_5614_new	16	32	22	22	31	17	33	23	29	13
CATTGGCTCCCACCTT	alt_5614_new	23	28	27	26	43	27	37	21	46	27
ATCCGAGTCGCCTGCT	alt_5614_new	7	13	3	14	7	5	5	6	10	10
ATTTAGAAAAGGCGAC	alt_5614_new	43	71	32	38	64	35	78	38	76	39
CATCACGTTTGTTATT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TCCGGTGGGTTCTAGG	alt_5614_new	46	59	40	46	73	30	68	39	65	37
CGAACAATTCCCTCAG	alt_5614_new	19	27	22	15	28	14	23	27	25	21
AGATTCCAGCGCTTAT	alt_5614_new	59	79	69	56	105	55	93	57	106	36
TCTCACGTCAACGTTG	alt_5614_new	68	100	88	48	120	61	94	73	120	54
CTTTGCTCGGGACAGA	alt_5614_new	2	5	15	4	2	2	8	4	7	6
GCCTCTTATTGGCTGG	alt_5614_new	2	6	3	2	8	4	9	0	3	5
ATCTAGAGTTCAATTT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
CTGCCCCGGCATATGT	alt_5614_new	18	22	14	9	18	14	18	7	12	12
TCGCTCTAATTCAGCG	alt_5614_new	11	25	9	8	36	12	15	14	27	9
TGTAAATGCTGCGTCT	alt_5614_new	33	43	48	37	58	39	61	39	59	36
TATGTCATCACGTTCG	alt_5614_new	7	13	9	8	16	11	8	5	13	6
ACTGTAGGCTATGAAC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
CCGAGCCCCATCAGAC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TCCTGCTGGCTCACGA	alt_5614_new	19	13	9	8	15	14	18	16	9	11
TATCAGCAGCGATGCA	alt_5614_new	50	38	64	44	58	45	71	49	59	58
TGCGCTAACTACTGGA	alt_5614_new	15	15	13	6	15	7	17	10	14	6
GATGCTGTGGCGGTCT	alt_5614_new	69	109	99	78	104	67	119	62	122	60
ACCGTTGGTGCCGGCT	alt_5614_new	51	81	47	43	86	31	90	44	82	37
GTAACGAGTCGAGCCG	alt_5614_new	30	39	46	40	52	27	47	27	38	30
TGGCTTGTTTGTTATG	alt_5614_new	0	0	4	0	1	0	0	2	1	0
TAAAACGCCCTTTTTT	alt_5614_new	52	67	53	55	64	41	71	41	79	44
ATTTCGAGGCACCCGC	alt_5614_new	12	27	24	18	30	22	32	30	24	15
AATGGTAGCTCTAACT	alt_5614_new	7	10	14	5	12	6	8	8	11	6
TCTAGTCGTGAGATGA	alt_5614_new	0	1	0	0	0	0	0	0	0	1
GGGGTCTAATGCTTAC	alt_5614_new	19	33	29	25	47	22	54	11	52	22
GTTATTGGGCTCACAC	alt_5614_new	10	19	12	11	27	15	34	20	24	10
CTGACTCCTAAAATCC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GCGTTCTTCATCCTTC	alt_5614_new	1	6	6	6	2	10	10	7	8	5
CCGCACTGGTCCGTCC	alt_5614_new	4	42	17	11	44	6	47	6	31	4
CTGTCTGAGTCACAGA	alt_5614_new	30	53	40	39	55	40	71	52	83	42
GCTCCTGCGCTCCTTC	alt_5614_new	51	90	55	55	80	50	78	42	74	46
GGAGAAGTGTGTGAAA	alt_5614_new	3	5	6	7	4	4	5	10	7	5
GGTGGCTGTCGGAGCC	alt_5614_new	5	6	5	7	14	1	13	6	13	2
GGCACCTGCAGCATAT	alt_5614_new	25	48	30	19	36	29	37	23	55	25
TCCTCATGAGCTTCTT	alt_5614_new	12	10	10	12	14	5	12	8	13	12
CGGTGTTACCTGTGCC	alt_5614_new	0	4	0	0	3	2	7	1	6	0
TCCTTGTTTGTATGAT	alt_5614_new	9	19	7	15	22	17	18	16	15	12
ACTACGTCCAGTCCTC	alt_5614_new	15	27	12	14	22	13	23	6	17	11
GTTCTACAATAACAAT	alt_5614_new	2	3	2	2	2	2	2	1	4	0
ACGGCATAATACACTG	alt_5614_new	17	31	18	10	16	12	22	20	19	13
ACACACTGTCCTTCAG	alt_5614_new	5	23	10	16	21	8	17	10	29	8
TGTCCATACCTCTGGA	alt_5614_new	25	37	40	18	47	16	47	15	40	27
CAGTGGGGTACGTCCG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TTAGCTTACTGTTCTA	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TGGCTTTGAGCACAGA	alt_5614_new	15	25	19	10	19	16	29	10	28	11
CTAAATATTGGGACAC	alt_5614_new	7	10	5	2	3	3	12	0	6	4
TGTCGTCCCCATCAGT	alt_5614_new	12	17	2	5	17	7	20	4	21	4
TTCGTCCCGAGCTTCT	alt_5614_new	13	22	18	16	22	4	20	16	27	14
GTCTGTTACATTGCTC	alt_5614_new	17	13	12	11	16	13	13	19	27	12
TGTGTCTTCTAAGACA	alt_5614_new	43	88	52	44	82	43	106	36	85	33
GATAATTTAAAAGGTC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TGGCGTGACATCTGTG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TGTCATCGTACCCCCG	alt_5614_new	15	23	18	8	19	19	14	8	14	8
AGTGCGCAAGAACATC	alt_5614_new	15	14	17	15	18	8	19	18	18	10
TAGGTCGTCGTTTCTC	alt_5614_new	9	25	21	12	30	16	31	26	32	15
GCCATGGCTTCACCTT	alt_5614_new	14	19	16	18	24	15	20	19	29	14
AAGCGCGCTACAACAT	alt_5614_new	12	24	20	15	22	14	23	18	29	10
TCAATGGAATCCTCAG	alt_5614_new	48	63	69	59	77	51	75	56	57	45
CAATACACTCAGGCTA	alt_5614_new	42	119	62	47	121	26	152	26	136	39
AACGTAGACACTTAGT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
CGTTAAATCTAGCAGC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TGGGGCCATTTAATTG	alt_5614_new	32	68	27	17	58	18	45	42	51	17
ACTTTTTTACTCTTAG	alt_5614_new	8	17	4	6	12	4	15	11	15	10
GTTACCGAGATAACTG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
AATGTCATGGTACCTT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
ACAAAAATCGTTATAT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTATTTCAAGC	alt_5614_new	18	27	22	14	29	21	31	20	31	20
TTCAGCGGGCCTGTTT	alt_5614_new	28	42	34	20	60	31	47	27	51	18
GTATTTTTTGAACAGT	alt_5614_new	39	51	28	24	55	26	51	35	56	21
GTCTGGGCAGAATAAA	alt_5614_new	12	18	12	21	15	14	17	14	27	6
CGAAGCTGTTGTCATG	alt_5614_new	37	50	44	36	52	28	57	30	60	34
GGAGGCCAACCACCCT	alt_5614_new	8	10	12	9	17	7	18	21	12	1
TAAATGGGTTCAAGTG	alt_5614_new	30	46	41	29	54	36	59	27	40	23
GCTTGGTTCGCCCGCC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GGGGTCTAGTTCACAT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GCTTGGTTCGCGGCCA	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TATTTCTTTCGCTCGT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GGCACCTATCGGCAAC	alt_5614_new	16	30	24	17	29	15	27	22	28	7
TTGTCCCGTCTGGATT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GTGCATTTAGGGACGA	alt_5614_new	13	26	14	12	15	12	18	9	21	5
AACCACCGGTTTTACG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TTTACTGTCGCGCTGT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
CAATATGAACTCCACT	alt_5614_new	44	54	46	41	67	38	89	35	71	26
AGGCGAAGCGTTTTAT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
TGGAAGGTTCCTGTGA	alt_5614_new	37	34	38	22	32	28	40	27	53	33
TATTGTACGTCAACCA	alt_5614_new	27	47	33	23	37	19	47	19	47	28
TTCCAGGGTGATGCGC	alt_5614_new	0	0	0	0	0	0	0	0	0	0
ACCTCTTCCCATACAC	alt_5614_new	27	55	56	35	59	32	61	33	44	23
CCTTCGTATCGATCTG	alt_5614_new	7	22	14	3	17	6	20	8	16	5
CATGCATGACCGTACG	alt_5614_new	0	0	0	0	0	0	0	0	0	0
ATCTGATCTTTTTAAT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
GGTCGACGGTGCATTG	alt_5614_new	2	6	2	1	5	1	5	0	9	1
TTAACAGTTTTGTGTC	alt_5614_new	26	47	39	34	35	24	40	27	44	27
ATGTCTAAGCTTTTGA	alt_5614_new	28	43	39	32	47	30	54	20	64	28
GTCTTCTGGAGACCAG	alt_5614_new	118	164	114	120	192	95	209	85	172	106
GATTCCCTCATTGACT	alt_5614_new	0	0	0	0	0	0	0	0	0	0
CCTGTCTCTACTATGT	alt_5614_new	16	7	11	13	16	9	26	5	30	6
GGTTACCATTCCACTA	alt_5614_new	0	0	0	0	0	0	0	0	0	0
ACCTTGATTCATAGTC	alt_5614_new	4	9	7	12	3	7	9	7	11	4
TTACTCTGCCCCTTTC	alt_5614_new	10	13	10	5	14	12	23	12	15	6
GCTTCTCCAGCCTGCA	alt_3332_RC	83	112	87	82	117	75	113	93	102	69
CCTTGCATTGGCCAGG	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGCCTTGTCGTT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TCCGTGGGCCGTAGAC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TGCGAGCGAATGCGAC	alt_3332_RC	1	5	12	2	3	4	1	1	7	6
TCTTTCGATTCCCACA	alt_3332_RC	6	2	3	4	3	1	6	12	4	3
ATGTGGGGCAGAATTG	alt_3332_RC	80	88	83	63	108	66	119	71	111	67
GAGTTTAGCTTTTATT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TTGGACTCATGGTTTT	alt_3332_RC	12	19	12	10	23	16	19	13	30	10
AGAATGACTTATTTTT	alt_3332_RC	0	0	0	1	0	0	0	2	0	0
CAACGTCTGCGCATTT	alt_3332_RC	8	5	11	7	6	10	4	7	10	12
TCTAATCCCGATGCAT	alt_3332_RC	0	0	1	0	0	0	0	0	0	0
TTTCCACTTTACCTCT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTCATCTCTAGG	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CCAACGGGATTATAGG	alt_3332_RC	9	10	9	11	14	11	20	9	21	20
CTTCTTAGTTGATGGG	alt_3332_RC	12	14	11	17	21	6	15	15	18	14
CATCATTGTCTGATCC	alt_3332_RC	3	8	8	9	7	5	9	2	14	2
AGGCTTGTTCCGGGTT	alt_3332_RC	28	30	43	26	48	36	34	39	40	32
TGCTTTCGTGGTCATG	alt_3332_RC	19	27	21	7	25	18	21	16	26	8
TCGGGCTAATCACCCT	alt_3332_RC	3	1	11	10	2	0	7	4	5	3
CCAGGTGGTATGGGCC	alt_3332_RC	9	13	13	11	12	9	20	15	12	9
CTGATTTTATTGTTGG	alt_3332_RC	22	32	40	29	41	38	30	35	28	28
CTTTCCATCAGTACCC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
AGTACTCTGTTAACGT	alt_3332_RC	44	42	50	48	57	28	43	42	45	29
ACAGTTATCATTCGTG	alt_3332_RC	10	8	24	15	13	11	29	11	10	14
GTTATGTTGGTAATCT	alt_3332_RC	9	2	5	4	6	1	2	3	1	1
GTTGTCTGCAGCTGTG	alt_3332_RC	38	34	33	27	48	26	38	23	39	25
TCACTCCGCCTTGTTA	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GCATCGGAGTGGATGT	alt_3332_RC	3	1	5	6	3	8	6	2	4	3
CAGGAAGCACCGCCCC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
AAAAGGGACTACGATC	alt_3332_RC	18	22	16	23	42	27	33	16	26	13
AAGATTTTTCTGAAAG	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GGGCGTGACTTGCGAC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TTTCAGGCTCTGCGGT	alt_3332_RC	8	9	8	8	12	9	5	13	11	4
TACCGTTCTAAGTCAG	alt_3332_RC	11	17	15	13	25	10	19	18	24	17
TACCCAAGGTCGTGCC	alt_3332_RC	11	9	8	9	13	14	9	8	10	11
GTGAGCAATCCCCTTA	alt_3332_RC	10	10	12	7	21	7	10	7	17	11
GTGCGTGTGAGACAGC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TTAAAGGCCGTAACGG	alt_3332_RC	23	24	31	17	20	24	23	20	32	28
CATCAGTACTGAACAA	alt_3332_RC	19	20	23	25	20	20	35	11	21	22
CCCCCCGGATCGCATT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GCTCCCCATACAATTT	alt_3332_RC	1	7	4	1	17	1	14	4	8	3
TTAGTAACTTCGGGTG	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CCGGTGCGCTTTGCGA	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TCACGACTCCGAAAAT	alt_3332_RC	4	1	3	3	12	9	4	1	4	5
GTTCTATGGGTCCACA	alt_3332_RC	151	177	153	134	185	143	192	144	177	130
GCTGTACACAATGGAC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CCTGCAGACTTTCCGT	alt_3332_RC	27	72	34	30	92	32	79	28	96	25
GCTCGAATTTTAACTA	alt_3332_RC	47	64	77	68	77	69	71	63	83	43
GGGGGGCCTAGCCCGC	alt_3332_RC	172	158	220	173	155	148	148	140	129	132
TCGTCGGATATTCTAC	alt_3332_RC	56	85	64	45	83	43	102	56	85	39
GGTTAAGGTAGGAGCG	alt_3332_RC	12	28	30	13	14	11	23	10	25	19
CTTGTAAGTATTTTTC	alt_3332_RC	0	1	1	0	1	0	1	0	0	0
GCCACCCCTGCATTTG	alt_3332_RC	101	149	165	130	158	124	158	116	162	115
CGATTCATGTGTCCGC	alt_3332_RC	24	22	18	14	22	21	17	11	26	12
TCTAATCCTGATGCAT	alt_3332_RC	42	75	77	58	77	59	69	56	77	47
ACATATCAAGCCATTA	alt_3332_RC	84	77	123	83	91	81	119	73	99	62
GGTCGGGCAAGTCCTA	alt_3332_RC	13	18	13	4	10	10	20	11	8	6
GCTGGGTTATCGAGGG	alt_3332_RC	7	10	14	8	6	12	16	6	15	3
TTTCCCTGTCTGTATT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TAACCTTCCACGTAGT	alt_3332_RC	13	24	19	14	26	14	20	22	24	19
GCTTGTTTCAACATAA	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GCTTAGTCTGCGCCGC	alt_3332_RC	23	20	30	26	29	16	10	21	31	16
TGTATCCGATAGGCAT	alt_3332_RC	78	107	103	74	109	81	105	80	101	85
CCTTGCCATGTGTGAA	alt_3332_RC	1	16	6	1	13	1	15	6	9	3
CATGGACGATGCCCCT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TTTATCTCTCCTTCAG	alt_3332_RC	27	19	25	17	23	22	33	21	26	25
CATTCCCACAGTATTC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CCTAGCTCATTATTCC	alt_3332_RC	19	62	24	12	72	10	63	11	70	12
CCTCTTTTGAATGCGC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TTCAGGGCGTATTAGA	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CTGTGAGTTTAGCTCC	alt_3332_RC	28	51	42	31	39	21	41	40	52	36
ACTCGAGAGCATCCTA	alt_3332_RC	28	29	37	29	48	29	27	25	35	24
TCGCAAGATCTTGTGC	alt_3332_RC	0	3	9	5	12	4	2	5	8	6
CCCACCTTTGTGCTGT	alt_3332_RC	17	17	12	6	32	6	23	11	17	5
TGCACACGTTCACCGG	alt_3332_RC	19	25	19	20	19	14	19	23	20	18
GAGCTCGTGGTCATAT	alt_3332_RC	74	84	86	72	62	57	72	55	73	60
AGCATGGGTCCACTTC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
ACCGCGAATACCACGT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GCCTCAAGCGGTCGTC	alt_3332_RC	0	1	1	1	2	3	7	1	2	3
ACCGCACATATTTATC	alt_3332_RC	44	39	68	34	63	39	44	29	54	41
ATCTCATTAATGTTCC	alt_3332_RC	9	5	20	18	15	9	14	10	24	10
AATGAGGGGCTCTTGT	alt_3332_RC	85	91	90	100	103	76	114	92	109	73
CTGAGTCGCTCTATGA	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GACTTGATTCGTTTTA	alt_3332_RC	15	17	23	6	21	10	19	13	15	4
CCGTAGAAAATCTAGA	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
AGTATTTCGCCCCTAT	alt_3332_RC	34	37	46	32	43	32	47	35	41	31
TTTAGACTTGTCTTCC	alt_3332_RC	2	1	11	2	8	5	11	3	8	11
AGTCTGCTGCGCAATT	alt_3332_RC	33	44	35	37	38	26	23	30	50	27
CGTTACGGGTCCTACA	alt_3332_RC	0	3	1	4	3	3	7	2	2	2
TCTCTCAACAATCTTC	alt_3332_RC	25	26	26	25	33	19	37	23	26	34
CACGGGAACTTGCAAC	alt_3332_RC	4	6	6	7	4	2	7	2	7	3
CGGGCTTGGACTACGT	alt_3332_RC	21	22	24	20	22	12	14	15	24	23
AGTAGGGAGTCATTCC	alt_3332_RC	8	4	6	2	7	5	5	3	1	3
GTCCCAATGGTGAGGC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CGCTCGAATGTATGCA	alt_3332_RC	62	56	52	48	53	56	66	48	56	56
CTGTCATGCGTCACTG	alt_3332_RC	15	26	15	22	24	21	14	21	22	24
TGTCTTTGCAGGTTGT	alt_3332_RC	42	46	50	32	36	38	37	35	46	30
CTTCTACCTCGATTCA	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CCCAGGTGCAGTCTAT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TAGGTCCCCCGATCGA	alt_3332_RC	25	52	31	34	45	20	45	31	40	20
ATAGATAGTCGATTTG	alt_3332_RC	11	8	12	14	16	17	14	10	16	16
CTGGTGTCCTCGGCTT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
AGGAGTTCTCTATCTT	alt_3332_RC	36	32	30	26	33	35	28	27	39	37
CTTGTATTCAGCGTTC	alt_3332_RC	4	4	5	2	6	2	8	2	5	2
ACATGCGGAATTTGAT	alt_3332_RC	23	28	23	22	28	15	27	19	30	23
TCCGACTTTGTTCAAG	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
CCAAAGTCAATACTGT	alt_3332_RC	1	9	7	0	2	1	5	6	8	1
GGATACTCTGGAGTTT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TCAATTTCCTGCATAG	alt_3332_RC	58	90	69	53	64	55	83	36	90	49
GTCCCCCCCGTTCTTA	alt_3332_RC	58	87	60	59	84	43	111	65	111	37
CACATCTCAATCCGCC	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
GGATCGTAGTACCTGC	alt_3332_RC	4	2	1	2	2	5	2	1	1	0
GCGTTACATGATTAAT	alt_3332_RC	75	96	109	71	92	61	112	91	113	50
CCATCGCCCCTGCTCA	alt_3332_RC	29	38	33	27	46	42	38	25	49	35
TTAGCACTGCGCCTAC	alt_3332_RC	20	29	14	14	18	14	19	4	18	9
CTCTATCTCCCTCCCT	alt_3332_RC	0	0	0	0	0	0	0	0	0	0
TCCCGTATCTTGAACC	alt_3332_RC	82	94	123	111	137	83	132	98	140	99
ATTGCATGTTCGCATA	ref_5782_new	14	16	19	18	22	28	10	12	31	11
TGTAGAAGAGCTTGGT	ref_5782_new	48	50	72	44	51	57	54	47	48	47
GATATAAGGGTTGCTA	ref_5782_new	74	70	82	68	65	86	78	78	72	65
TCGCATTACGGGATAC	ref_5782_new	35	28	41	35	28	27	22	30	35	22
TGTCTGGTGTACTGAT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
ATTCTGAATAAGTTGT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TTCTCATTTTATCCAG	ref_5782_new	10	8	11	7	8	7	13	5	8	8
ATTCTGAATAAGTTTT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
ACCCTTACGTCCCTAT	ref_5782_new	14	24	30	19	23	25	34	19	18	19
TCATTCGCCAATGCCC	ref_5782_new	11	7	25	28	12	8	10	16	11	13
CATGCTTTTTTGTCGT	ref_5782_new	6	7	9	9	4	6	10	7	8	4
CGGGATCGTTAACCCG	ref_5782_new	22	15	24	23	22	15	16	20	31	16
TCAAAGCTCCGCTCTT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TCTCTTCCGTGGGTCT	ref_5782_new	12	16	11	13	14	10	7	7	13	17
CCTTGCTCAGCAACTG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CGTGCAGTGGCGGGTA	ref_5782_new	5	8	8	9	4	2	4	11	5	1
GATATCACGGACCTTG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
AAGGTCTGGTCTATCG	ref_5782_new	105	93	105	90	98	102	90	89	95	95
TACCCGACTCCGACCG	ref_5782_new	117	116	132	120	141	103	162	114	156	94
GCGCATCCTATGGGAC	ref_5782_new	48	48	48	47	53	53	50	47	76	38
CTCTCGAGCAACTCTT	ref_5782_new	16	32	35	29	15	13	35	20	20	27
TGGGGGGTTTTCACAT	ref_5782_new	72	74	108	69	49	85	63	67	83	65
GAGGCCCATAAACGGC	ref_5782_new	168	167	226	179	152	158	150	154	188	128
GTCTTCCTAGTTCACC	ref_5782_new	57	35	53	38	44	42	49	33	34	29
GCCGAAAAGTTCGGGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TAACTCCTGCCTCTTG	ref_5782_new	16	9	13	14	12	15	15	18	15	6
GTGCGCATGTATTATT	ref_5782_new	27	22	32	40	38	38	26	35	35	33
GTTATTCTGTCTCTCT	ref_5782_new	27	24	40	36	24	32	25	36	21	28
CCAATTAAATCTGAGA	ref_5782_new	50	53	71	48	57	51	50	59	59	46
CACCCCGTGCTTTGTA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TTCATATTAAAGGCTC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CCAGTGTTTGGGTCTT	ref_5782_new	7	5	7	11	3	3	13	8	12	7
TACGCCATCTGGAACA	ref_5782_new	4	15	18	17	15	7	17	14	15	11
GGCCCGTACTTTGTGG	ref_5782_new	10	9	14	16	7	19	15	18	13	17
CTATGACCGATAGAGA	ref_5782_new	182	151	207	176	136	164	155	170	162	143
TATCTAAGTGTGCGCC	ref_5782_new	110	103	132	93	99	91	90	95	71	85
TATTCTTGGTGTTTAG	ref_5782_new	95	91	115	117	97	97	110	104	106	94
ATGCTCGATAGGGAGA	ref_5782_new	6	6	6	7	10	7	10	5	4	6
AACTGGAACGGGTAAG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TAGCTCTTCAAAATAA	ref_5782_new	28	20	35	32	16	34	23	25	10	24
TGCATTCCAAATTCGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TTCCGACATATTTCGG	ref_5782_new	25	33	45	40	22	31	31	40	30	22
GATTAAAACCCACGGC	ref_5782_new	80	74	104	86	65	82	88	74	76	76
TTTCCCGGGATCCTCT	ref_5782_new	22	7	35	14	17	22	12	21	29	16
CCACCACGGATAGAGC	ref_5782_new	11	9	10	5	34	10	23	8	5	8
CTACTTTAGCCTTGTT	ref_5782_new	65	62	61	84	80	61	58	52	88	52
CCGCAAAAGGATGGAT	ref_5782_new	23	20	18	28	17	19	25	22	28	17
CGCAGTATCGTGTACC	ref_5782_new	13	20	16	28	18	19	19	13	23	18
GGTGGCAATTGCATAT	ref_5782_new	228	238	325	235	220	235	274	233	262	204
CTGCCACTAATTACAG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CGCTGTAGAGCAACGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GTAACAGATCCCGCCG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CGTGCATGTATCTTGC	ref_5782_new	0	0	1	1	0	2	0	0	0	0
TCGGTTCAAGGGTAGA	ref_5782_new	26	14	19	18	22	18	20	21	18	13
TTACCGGCGTCACACT	ref_5782_new	10	6	9	22	4	16	5	8	13	11
TCATCATCTCGCTGCC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CTGGGTTCTGCATTGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CCACTCTCACGGTTAA	ref_5782_new	8	8	11	10	13	11	4	12	12	5
AAGACATGTGCTTTCC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GTTGGCCGTTCAGGCA	ref_5782_new	50	50	43	38	42	43	34	47	39	37
CAGTGGTAACTCCTCC	ref_5782_new	50	58	64	62	53	50	64	55	54	44
CGCGGGTTGCTCCTAT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TGAGGAACTATTCTCT	ref_5782_new	90	103	133	116	97	100	127	100	119	64
ACGGTAAGTAATGTGT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CGTTCTGGCTCCACGG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
ATTGCTTCCAATTGAT	ref_5782_new	10	14	19	18	18	9	16	10	11	7
CTCCAGTGCGTGTGGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TGTTCGGTGCATGATT	ref_5782_new	230	228	256	224	228	236	208	249	264	189
GATCGTACGGTCAGGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GGATATGAGTTCACGA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GGGCGACATTACCCAA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GTCCGCTTCCCTTATC	ref_5782_new	25	35	64	56	35	38	34	27	27	35
TACGTCAGTTTGGATT	ref_5782_new	16	19	35	24	19	18	9	22	15	5
CCAAACCATACTAACA	ref_5782_new	2	2	6	5	3	5	6	2	0	0
TAACTCGGAGTAAGTG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
AATTCCCGGCGTCTCT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CAAATAAAATTGGGGC	ref_5782_new	42	27	44	31	28	39	31	46	37	51
AAATTATTTTTCTCCG	ref_5782_new	60	34	75	51	39	61	39	59	31	42
GTTCTCCATCTCGTAG	ref_5782_new	21	16	21	17	10	14	17	13	11	21
CTTTTGGGCTGCGCCG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
ACCCTTCCTGTCCTCT	ref_5782_new	13	11	19	5	4	10	14	11	18	7
GTGCGTAGCTAGATAC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TGGTTCCCGTTAACCA	ref_5782_new	32	28	60	45	34	49	33	38	36	43
CCGGCGAATCTTTTTA	ref_5782_new	57	57	89	59	60	54	62	49	80	68
GAGCCACGCCGCCGTG	ref_5782_new	25	35	33	34	27	51	37	32	42	29
CACGTAGATTTTACGG	ref_5782_new	3	1	7	1	5	8	7	4	4	8
ACTCGAATGTTTCCTA	ref_5782_new	10	18	24	19	11	12	13	18	23	14
AGGGGGGTTTTCACAT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TATCTTTGCGCCTGAG	ref_5782_new	43	44	36	57	55	42	56	40	61	47
GACAAATAAACACTTT	ref_5782_new	38	25	53	35	31	30	38	29	23	41
GGTTTGTTCTGGATGC	ref_5782_new	5	5	4	4	6	4	2	4	6	3
CGGCCCGCGTGATGAC	ref_5782_new	33	26	39	21	16	20	20	22	23	15
CGCATGGTTGTAGCTC	ref_5782_new	20	28	23	24	27	19	26	23	33	30
AGGGTCGGAGTTCTGA	ref_5782_new	11	14	19	17	16	20	13	17	19	18
GTTCAACGAGGTTTCT	ref_5782_new	19	14	29	19	13	16	18	28	10	12
ACGGTAGAAGACTGTA	ref_5782_new	63	38	48	50	36	43	47	44	38	32
ATAATAAGATCGAGAG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CACATACGATAGGATC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
AGTTGAACGTAATTTC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GAATCTAGCCACACAT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CGAACCCTCAGGAATA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TCAGTGAGGTTTGCTG	ref_5782_new	6	7	13	16	9	7	21	10	14	11
GTGCTATAGGTTAGAT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GGTGTTTCGCCCTTTA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CATTGCTACTGAATAT	ref_5782_new	4	18	20	12	14	11	12	21	12	11
CCCCCTATTTACTTGG	ref_5782_new	21	31	19	19	21	10	30	12	25	7
AGGGATTGGATAGCTT	ref_5782_new	75	61	109	71	62	79	61	79	82	70
GGGCAGAACTACCTGC	ref_5782_new	11	4	10	13	16	6	4	11	9	12
TTCCTCGTGCCAGACC	ref_5782_new	36	40	42	36	25	45	26	32	29	25
ACCTCATGGCCGCGCA	ref_5782_new	3	3	3	2	2	3	5	3	4	3
GCACCTATCTCTATGG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
ATCTAATTGCACTGGG	ref_5782_new	48	46	44	52	32	42	37	43	46	37
GCTGACATGTTCAGCA	ref_5782_new	52	42	55	54	41	47	54	41	43	40
CTTATATCACCTCTAG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CGATTGGTAATAGCTC	ref_5782_new	17	18	13	20	29	18	24	16	19	9
TTGATGGTGACCTCCC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CTCAGACACAATTTTA	ref_5782_new	22	32	31	19	18	25	24	31	33	25
AATTTCTCCCTGGGTC	ref_5782_new	26	30	37	29	21	25	25	22	33	31
GTGGGGCTTACTAGCA	ref_5782_new	47	35	38	40	32	45	42	34	37	43
CTTGGCCTTACTGTGC	ref_5782_new	5	11	8	5	10	4	12	6	16	3
GGAACAATTCAAGTAG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TGCTGTGCCCATGTAA	ref_5782_new	1	4	7	2	1	1	2	3	2	2
TACACTTGTGGCGACA	ref_5782_new	7	10	10	9	3	6	9	6	9	6
TTATACGATCCTAGCG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TGTTACCTCCAGTGTA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CATCGCCATCTCTCAA	ref_5782_new	19	35	26	35	29	23	26	26	25	21
CATGGACGAAAACGTC	ref_5782_new	0	0	0	1	1	0	1	1	1	1
ACCAATTGGTTGCGCG	ref_5782_new	6	14	7	6	4	6	8	6	11	3
TGTGCTATATGGGATC	ref_5782_new	5	9	12	10	9	6	2	11	6	5
CAGTAATAGCTTACTG	ref_5782_new	25	19	27	17	27	20	21	15	26	10
TCCTGGAGGTGATGGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TTTGTGCCATTCACAT	ref_5782_new	9	8	13	14	10	12	18	14	11	12
GTTGAAATGCGTGCCC	ref_5782_new	6	8	5	5	5	6	4	9	8	11
AATCGTTGTAAGTTAC	ref_5782_new	13	24	18	14	12	26	15	11	26	19
GTCTGATGTCTCGTAT	ref_5782_new	23	21	31	18	20	17	24	23	29	13
CGAATTGTTGTAGGTC	ref_5782_new	25	24	33	34	22	32	36	26	35	27
CGTATTATTTTGATAC	ref_5782_new	3	1	8	10	1	3	3	2	3	9
GGATCTTCTTTCGGGG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CTAGCTCGCCTGTTTG	ref_5782_new	61	66	57	55	59	45	86	51	87	42
TTTCCACGTACGTGAA	ref_5782_new	38	42	37	23	23	22	26	31	32	32
ATCTGAGGCGTGGTTT	ref_5782_new	97	112	108	100	89	83	106	92	107	78
TCCCGTTAGAGATCAA	ref_5782_new	15	7	15	15	17	10	8	13	15	17
ACCCGGTGTCAATAAA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CCTGTGTGCTGGATAT	ref_5782_new	11	12	7	16	14	10	8	10	8	7
CTAGCAGAGTCATCTC	ref_5782_new	21	18	29	18	25	16	18	10	24	13
GTTGGAACCTGGCTTT	ref_5782_new	18	18	26	23	11	20	27	21	17	14
ACACATGCTACGAATG	ref_5782_new	12	10	18	10	8	14	11	13	6	15
CATCCTACTACCAGCA	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TCAACGCCTTTTGTCT	ref_5782_new	42	31	44	45	32	29	37	27	33	23
CTGGTGCAAAGCAGCG	ref_5782_new	6	34	5	9	33	9	42	5	47	6
CACTCACTCCTTCGCG	ref_5782_new	6	23	3	8	43	3	38	6	44	5
GCCACCAAGACTGCTG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CACTGGCCGACTGCAG	ref_5782_new	18	34	20	20	39	20	43	16	37	20
ATTTCTTGAGTGACGT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GGGCCGTTGCTCACTC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
GTACTTTGTTAATGTA	ref_5782_new	4	7	11	5	7	6	6	2	10	8
ATGTCGGAAACGCTCT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CGGTGAATGCATTCCG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
AACCAGGTTGTTTGGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
AGCGGCGGTTTGAATG	ref_5782_new	56	55	72	90	67	44	76	57	54	65
CTTATATAGCGTGACG	ref_5782_new	0	0	0	0	0	0	0	0	0	0
TCAAGGTTGAATGGTA	ref_5782_new	11	2	6	3	6	7	6	14	7	6
TGCGCTTGAAGGTCAG	ref_5782_new	34	27	55	34	14	35	35	51	34	23
TTGGGACAAGTCCTGT	ref_5782_new	5	11	11	9	13	13	10	9	11	17
GATCATCGTGCACAGC	ref_5782_new	0	0	0	0	0	0	0	0	0	0
ATCATCGGGGGTGGAC	ref_5782_new	55	43	91	70	41	54	50	78	58	63
GCCATAGCTTTTACAT	ref_5782_new	1	1	2	4	0	2	0	0	2	1
CTGTAATGCTCGAGTC	ref_5782_new	10	4	10	4	9	2	4	12	5	4
AGTCTATGCCTTCTTC	ref_5782_new	15	15	25	19	17	18	24	15	18	18
GACATTATCAAAATAT	ref_5782_new	0	0	0	0	0	0	0	0	0	0
CCCCGCATACACCTTA	ref_5782_new	1	8	1	0	4	1	2	0	2	0
GCTTCTTAATACCTTG	ref_5782_new	71	57	79	60	48	50	51	54	63	54
GGTACCGGCCAAAAAC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCCGCCTGTTCGA	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGTAGAATTATCA	alt_534_upstream	27	25	22	30	27	23	12	20	27	19
GCAAAGTCTTCCATAA	alt_534_upstream	24	23	41	31	24	23	18	30	20	18
CGATTCTATCGCGTTC	alt_534_upstream	28	7	16	15	12	20	10	14	14	14
AGAATTTGTCGCTCTG	alt_534_upstream	2	2	0	2	2	2	1	1	1	6
TTGGACATTAATGTTT	alt_534_upstream	68	41	73	57	62	41	58	55	64	68
AATGTGATTTTCCTTT	alt_534_upstream	41	41	57	69	44	65	29	53	24	64
CGTTTCCCTTTGCGGC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGTAGACTTTATT	alt_534_upstream	77	47	81	92	58	92	78	91	81	72
TCCCCTGGCGCCGTAG	alt_534_upstream	19	24	22	19	17	15	22	18	12	14
TTTGCTTACCATATCA	alt_534_upstream	53	49	72	67	52	37	53	31	52	40
CTGGGTTATGCTCTTA	alt_534_upstream	19	13	18	18	18	27	14	20	28	20
AAGGTGGACTGATGGG	alt_534_upstream	38	30	36	34	21	21	28	32	29	30
GCCCTGGTACGCCTAC	alt_534_upstream	29	98	28	30	97	32	96	24	104	12
CTATTATCGCAATCGG	alt_534_upstream	0	0	1	2	0	2	0	1	0	0
ATGCCGGGCGACAATT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TAGACGTTACATATAT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TGATCGCCGCTTCGCG	alt_534_upstream	3	9	9	5	7	6	11	4	13	9
ACTATAACCCTACTCT	alt_534_upstream	1	0	0	2	1	0	1	0	3	0
TCAGAGATACCAGATG	alt_534_upstream	21	16	23	7	14	15	13	9	9	12
GTGGAGGTACGCAGAT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCGTTCATTTCAC	alt_534_upstream	12	4	4	7	16	8	5	7	8	3
GTTTCAAGGTAGATTT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAACTGCGGATTC	alt_534_upstream	23	39	41	31	20	29	19	22	34	34
ACTATTATTTCTCGTG	alt_534_upstream	17	17	14	11	13	14	19	10	21	17
TACAATTCATTTTTAT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGTGGGCAGCTTT	alt_534_upstream	8	13	19	18	12	16	10	8	12	9
TTAGTAGATTTAGCGT	alt_534_upstream	2	3	3	1	3	4	2	5	2	6
TTTTATCTCTACCGTG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTATGTTCTGTCG	alt_534_upstream	67	47	73	62	53	60	56	58	75	60
TTCTTCTGAATATGCA	alt_534_upstream	12	3	10	8	8	6	3	6	6	3
ACTTTGTGAAGTTTCC	alt_534_upstream	48	25	41	50	27	32	25	33	39	37
CACGCTGTGGTTGTTC	alt_534_upstream	20	31	34	34	23	20	26	23	27	25
GTATCCTCCTACATCG	alt_534_upstream	1	0	0	0	0	0	0	0	0	0
GTAGAAATTTTTTCCG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CACATCTTCGGTCTCC	alt_534_upstream	8	12	11	19	11	9	8	21	12	11
GCTACTATGGCGTGAG	alt_534_upstream	35	39	57	43	31	26	43	29	37	38
CGGCCCGAAGTTACCA	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTCTATATTAGTA	alt_534_upstream	27	31	32	36	21	23	37	23	23	24
GGTCTGACCATATCGC	alt_534_upstream	10	40	17	17	39	19	45	17	42	14
GATAGCAGTTCAACAG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GGTCAAGTTGTCAATG	alt_534_upstream	45	29	42	50	31	43	34	34	35	25
GGCGGTCTATATCGGT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTTTCAGTCGAGC	alt_534_upstream	12	2	14	5	5	5	2	7	6	10
GCCCGAGGGAGTTTGC	alt_534_upstream	3	1	1	2	0	3	3	1	1	1
TTGTATCCATAACTAC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CGACTTGGATTAGTAC	alt_534_upstream	95	107	126	98	101	104	125	129	123	81
GTTAAGGTTGGTCTCG	alt_534_upstream	73	62	103	87	67	70	71	56	83	72
GCCAAATTGTTTCAAT	alt_534_upstream	23	15	39	26	20	32	28	18	31	31
AGGGTTTTGAGTAAGC	alt_534_upstream	5	7	20	16	18	11	16	19	9	14
CATTGGAACGTGGGGG	alt_534_upstream	6	1	8	8	2	6	6	4	0	2
GTTGATAGCGTACGAG	alt_534_upstream	24	10	28	19	16	23	13	16	17	18
CGCCATCCCTTATCCC	alt_534_upstream	14	29	19	18	36	12	34	19	34	22
TTTCTTCACTTGATTT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCCCTGTAAAACC	alt_534_upstream	21	31	33	35	29	35	24	18	17	26
TCCGGGTGACGTAGTC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCTAATCGTGGGT	alt_534_upstream	29	81	35	26	69	30	104	21	70	21
GACTCCGGGTCTGGCA	alt_534_upstream	66	88	89	69	98	68	79	64	76	65
TAAGTCTCTTTAAGCT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GTAACACAATTCGGGC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTCGGTATTATC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTGTAGATTAATT	alt_534_upstream	10	13	17	15	8	19	18	17	14	13
GCATACCGTAGGCAGA	alt_534_upstream	39	33	49	37	38	48	47	42	40	38
ATAAAGTGAACCGTTA	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTCACGTAAATTT	alt_534_upstream	25	15	24	16	14	16	19	14	21	16
GCAAACTTTTTATGCC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGCTTCTGCAGAA	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CCAAAGTCGATTAACA	alt_534_upstream	21	37	41	39	41	18	38	19	35	31
CTTTTATGCTCTCTTT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GTCCCCGTCAGCTTAC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCCGTGCCGGGCT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TATAGAAGTCCGCTGA	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCTGACGCAATAT	alt_534_upstream	6	8	11	6	9	8	5	10	11	11
ATGACCGTCAGAGCAG	alt_534_upstream	35	41	45	39	28	38	31	32	38	28
TACCCCCTGTCGTACT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TGGGATGCTTTTCACA	alt_534_upstream	36	15	41	42	26	24	24	29	19	29
TGTAGTTGCAAATTCT	alt_534_upstream	78	55	90	77	65	73	70	85	63	58
GGTGTATCTCGAAACG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GGACGCAACAACTGTT	alt_534_upstream	10	15	11	20	15	17	17	19	11	11
ATGTCCGTCTTCCGCC	alt_534_upstream	79	65	114	106	76	102	75	78	72	86
GCGTCTTTTGTTGGTC	alt_534_upstream	69	41	93	73	48	63	46	84	58	80
AATCCTATTTTGAGTC	alt_534_upstream	11	9	17	17	6	12	8	19	9	10
CTCTTTTCTTTCCAGC	alt_534_upstream	21	19	30	16	22	27	23	32	21	14
CATCGGTCGGTTAGCC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTTCCCACCCCGC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCTGCGAAGAATT	alt_534_upstream	50	30	47	48	42	52	39	35	39	34
GGTGCTTTTTTGGGCG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TTACGGCAGACGTGGC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
AGTAACGTTCCTTCGT	alt_534_upstream	16	10	11	13	11	5	10	11	8	17
CTTGAATTTACACCCG	alt_534_upstream	13	28	30	23	19	23	23	22	31	13
CACCTCAACCAGGGTC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCGATTATTGTTC	alt_534_upstream	9	7	15	7	6	5	7	10	6	12
TTATTGTCAATCTCGG	alt_534_upstream	38	32	66	43	27	32	30	27	30	32
CGGTCAAAGATATATT	alt_534_upstream	7	16	8	5	12	4	14	5	13	9
CATGCGCGCGGTGGCC	alt_534_upstream	144	121	189	139	125	146	155	128	165	144
TCAGTGAGGTTGGAAC	alt_534_upstream	7	7	8	9	10	9	12	8	15	4
CATCGTGCACCAGTGC	alt_534_upstream	7	9	6	10	15	5	7	9	5	5
TCTTCTGGGTAGGTCT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TTGGACCTCAGCATCC	alt_534_upstream	37	25	47	38	35	40	33	40	31	33
GGACTTTGGCGTATTT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TACGTGAGTTGTTGAC	alt_534_upstream	11	17	14	18	14	12	17	11	10	9
GAGCTCCGCGGTTCTT	alt_534_upstream	46	48	39	44	22	35	49	31	44	44
CTCTTGGCAAATTTTA	alt_534_upstream	22	11	28	19	17	16	26	29	22	14
CGCTATCGAGCGTGCC	alt_534_upstream	11	17	25	9	11	13	14	12	20	8
ATTTTACGCAAGTTCT	alt_534_upstream	30	38	41	34	35	25	21	35	38	35
TGTTCCTCTGACTCGT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGTAGCTCTGTCG	alt_534_upstream	6	4	4	2	4	3	3	1	7	4
TACAATCTCCGCGATC	alt_534_upstream	16	17	24	21	30	24	18	16	18	16
ATATCGCCTGGGTCCT	alt_534_upstream	29	23	45	32	28	34	30	23	29	24
TCAGCTCTTGTGGGTC	alt_534_upstream	4	4	5	2	2	1	3	2	2	3
GTATTCATTGTATCGA	alt_534_upstream	19	12	23	13	11	16	10	5	9	8
GTATAGGGTTATTATG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CTATCATTATTTGATT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GATTAACTACGCATGT	alt_534_upstream	127	82	141	106	107	104	95	101	119	111
ATATTGGCTACGGTTC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTTGGCTCCGATA	alt_534_upstream	16	34	21	24	32	22	23	23	38	22
TAGTAGGTTTGATGTT	alt_534_upstream	13	7	13	10	7	10	12	8	12	16
CCGCTCTAGATGGGTA	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CAGTAACACAGTATGG	alt_534_upstream	43	45	54	32	21	41	34	29	38	33
CTACCTTATTCTGTCG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GAATCAATTTCAATAT	alt_534_upstream	37	36	61	40	26	46	41	48	33	50
CTGTGCAATGACCGAT	alt_534_upstream	36	36	61	43	43	35	41	44	39	30
AAAAAGTTTGATACCT	alt_534_upstream	0	0	0	1	0	1	0	0	0	0
ATGGCCTCTTGTTCAA	alt_534_upstream	265	178	316	282	190	262	196	286	205	252
ACTTGTGCATGGCTGC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GCTCAGGACAGACATT	alt_534_upstream	71	61	103	93	57	78	64	75	68	75
GCTGTCACCTTAGTCC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GAATAGCACTAATACA	alt_534_upstream	15	22	24	20	19	22	30	15	27	24
GACCTATCTGCTCATT	alt_534_upstream	26	26	27	14	14	17	22	22	23	27
TTTCCGTAGTTTTGAC	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
GCGAATCTGACAGCCA	alt_534_upstream	80	64	76	59	53	65	53	45	60	55
TACTAATTTTGCGCTC	alt_534_upstream	34	16	32	24	19	30	20	22	13	22
CAGTGTACGAGAACAT	alt_534_upstream	10	16	24	16	14	10	9	17	12	12
TAGAGGGCCGGCCTCT	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
CATTTCGGGCTAAAAG	alt_534_upstream	62	34	79	48	52	49	39	35	33	54
GCCGGCTCAAGTGTCG	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGACAATGCCCAG	alt_534_upstream	3	6	7	2	3	5	6	6	5	2
TTAGATGCATTGGAAT	alt_534_upstream	1	4	2	4	2	2	2	3	3	0
CAGGCTCATGTCGAGC	alt_534_upstream	2	3	6	2	1	3	1	4	2	5
CAAACGGCAACATCGA	alt_534_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGGTGAGCTAAGC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TCGTAGTATGGATTGG	alt_5198_RC	57	11	66	52	21	51	16	47	20	38
TTGCCCGGGCACGTGC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GCCCGTTATTTTAGAA	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TTCCTTCTATTAGATT	alt_5198_RC	38	8	58	37	6	30	7	48	9	41
TAGTCTCGGAGCGGAT	alt_5198_RC	204	41	228	203	58	199	52	201	43	184
TTTAGTTTGTTAGGGG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TTGAACGATTTGTGTT	alt_5198_RC	210	35	196	192	40	161	51	172	48	172
TTACCACTGGGCTCGG	alt_5198_RC	18	0	26	24	6	18	9	20	4	18
AATTAATGACGCCCCA	alt_5198_RC	2398	472	3073	2620	536	2247	487	2468	546	2039
GGCCGCGTGTTGCTTG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGAGAAGTTTCT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GGGTTGTCTCCAAGCA	alt_5198_RC	266	50	300	256	71	246	53	221	68	212
ACGCTAACTGTTAAGA	alt_5198_RC	176	44	216	205	42	168	40	157	42	135
CCTTCGTCCCAGGAAG	alt_5198_RC	247	87	254	239	86	197	106	235	85	211
ATGCTTCAGCCCCAAT	alt_5198_RC	119	39	200	198	42	126	43	169	44	129
GCCCTCCGTATGCTGG	alt_5198_RC	148	41	190	176	30	164	36	157	33	136
GAATCTGAATCTCGTC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TGTTGGTTTTGTACCT	alt_5198_RC	664	153	731	684	146	584	154	580	147	556
CGTTCGGTGCGATGTG	alt_5198_RC	355	67	394	353	70	313	67	318	84	285
TAATGGTAACCTTCAG	alt_5198_RC	2	1	5	5	1	1	0	0	0	3
GGCCGGTCATTTCAGC	alt_5198_RC	171	29	158	164	40	124	30	163	75	138
ATGTACGATCCTATCG	alt_5198_RC	323	65	399	320	75	299	85	257	72	261
AGGTAGCATCCAATAC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TACAGTTGCTTACGTT	alt_5198_RC	787	156	970	853	160	766	188	765	166	718
CTTCGGGCTAGTGATG	alt_5198_RC	98	36	137	120	25	82	35	102	34	94
TATCAATAGTAAGTGA	alt_5198_RC	5	1	6	2	4	3	1	11	1	5
TTTCGTTTGGGCCGGT	alt_5198_RC	498	123	680	559	129	569	153	515	158	458
CAGCCTGCAATTATTA	alt_5198_RC	286	91	395	405	89	317	83	327	98	283
GGTATATTATAGTCTC	alt_5198_RC	32	7	55	46	9	23	14	35	6	37
TTTATTGCCTCCCTCC	alt_5198_RC	101	17	125	121	17	84	29	100	20	101
TGCTGGCCACATTTGG	alt_5198_RC	385	77	490	437	102	401	84	408	110	349
GACTCGGCTTGAGACT	alt_5198_RC	3	1	3	3	0	2	4	3	0	5
ATCTCTGCTTTAGTTC	alt_5198_RC	93	18	149	124	29	114	25	131	29	125
ATGTCATTTTTTTTCT	alt_5198_RC	23	3	28	40	4	20	5	23	5	20
CTATGGTCCGACCGGT	alt_5198_RC	878	188	1022	910	216	755	244	825	205	814
CGGGGTGGTTAATCTG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TTTCTCTTCTGGGATC	alt_5198_RC	79	20	105	99	17	95	18	89	25	69
AGTGGCCCTGGTGTTT	alt_5198_RC	79	22	112	89	20	85	21	79	21	73
GGCATTGTTTGAGTCC	alt_5198_RC	82	12	107	85	17	87	25	84	23	82
ATGTCTATTTCTCCAT	alt_5198_RC	147	30	165	192	37	125	47	169	33	129
GTGAACTCATCTGAGT	alt_5198_RC	166	44	188	186	44	157	47	186	36	165
AGTTTATTGTCTTGGG	alt_5198_RC	117	23	162	150	33	153	35	118	39	120
CAAGGACCTTAAGGCC	alt_5198_RC	85	14	90	85	22	54	19	75	6	76
TGATCGGGCCTTGTGG	alt_5198_RC	10	4	24	20	7	10	4	29	3	17
TTACTCTCGGCTCTTC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GTCGCACTGCAAGCAA	alt_5198_RC	65	13	85	81	14	76	18	72	22	69
CTGCCGGTGAGTTCCT	alt_5198_RC	330	57	425	334	90	299	84	352	59	253
TGGTGCGTAACTTCGG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TGGCTTCTCCCTATTG	alt_5198_RC	191	35	221	195	36	177	42	152	43	162
AACGCCTTAATTCGTT	alt_5198_RC	91	29	91	113	39	92	31	86	31	81
GAGGCTCGCTGTCCTT	alt_5198_RC	373	72	389	402	91	357	88	388	79	316
TGTCAGGTTGTTATGC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
CCCTGCCTTGTATCGT	alt_5198_RC	67	32	118	93	29	81	23	60	14	67
CATGTCCTTACCTAAG	alt_5198_RC	133	33	156	162	44	118	27	142	46	108
AGATACTTTGGAGAGG	alt_5198_RC	297	86	415	390	103	341	83	336	93	294
CTTGTATAGGGATGTT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
CATAAGTAATAAACCT	alt_5198_RC	187	40	238	235	37	176	28	187	36	154
CTCACCTTATTCAACC	alt_5198_RC	8	2	25	14	7	18	6	21	1	13
TTTTGAGCAGCGGTCA	alt_5198_RC	45	11	58	69	13	45	10	47	18	45
CAGATAATTTACTTCA	alt_5198_RC	59	19	88	73	23	86	16	82	18	75
ATAGAGTATGTGTCTC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TTCGGTTTTGATAGAT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TCGGTACACTGCATTC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TGTAACTCCTCTCATA	alt_5198_RC	195	87	251	219	67	215	59	206	71	168
AAGGACCCTGTTATTG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
ATACGCGAATATGTTA	alt_5198_RC	28	10	47	39	5	28	10	33	9	24
GATTGATATCATACAG	alt_5198_RC	120	31	152	141	35	106	33	125	32	91
AGTATATTATAGTCTC	alt_5198_RC	99	24	87	85	18	75	12	53	28	58
TTCTAACATTGGTCAC	alt_5198_RC	270	70	380	313	71	302	76	313	87	251
TTCTGGTGGTACTTGA	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TGCCATTTCATCGTAA	alt_5198_RC	420	138	493	446	137	415	148	414	166	373
GCGATTACATGTATTA	alt_5198_RC	467	101	539	497	96	449	101	411	90	405
TTAAGAAAACTGTAAG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
CGACGCCCTATTGTAT	alt_5198_RC	566	136	654	579	123	533	138	538	142	482
AGCTGTGTAGGGAAAC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TGCAGAACCTATGCTT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCAAAAGCTTTC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GCAGCTACGGATCGAG	alt_5198_RC	111	33	150	102	31	103	32	104	32	91
CAGTCCGCCATTCGCA	alt_5198_RC	354	70	408	365	107	368	74	353	70	320
TCTCATTGTAACTCAT	alt_5198_RC	66	21	73	83	21	64	20	81	20	76
ACAAGAATGGACAGTA	alt_5198_RC	242	52	279	254	52	233	48	242	56	206
AATTCGGTAACCGAAG	alt_5198_RC	101	29	146	115	25	108	17	103	30	97
CTAAGGTTCATCGAAC	alt_5198_RC	481	175	530	495	144	435	172	455	143	373
GCTTACGATAGCTCGG	alt_5198_RC	251	71	323	218	65	217	65	239	68	189
CTGGCTGTCTAGGAGA	alt_5198_RC	131	30	112	89	19	96	26	103	30	84
TTCTTTATAATAGATT	alt_5198_RC	39	4	59	42	5	44	16	52	9	43
TCAGTGTTATACTTGT	alt_5198_RC	248	59	342	263	78	216	95	241	90	189
TTGTATCCGCTGGCGT	alt_5198_RC	92	17	121	86	20	102	19	91	16	93
GCAATCCGAACTTTGC	alt_5198_RC	96	23	129	117	29	89	27	105	25	103
TACCTTGGTCAGAGTA	alt_5198_RC	593	128	736	606	140	613	164	498	128	472
TATGAATTCCGATACA	alt_5198_RC	87	19	126	83	18	84	21	82	19	89
CATGATGAATAATCAT	alt_5198_RC	22	6	31	17	4	18	2	14	0	14
GTGTTAGCCAGTGTTA	alt_5198_RC	60	15	66	65	6	48	17	60	11	50
TGTTCACTTCAGTTTG	alt_5198_RC	574	117	598	504	147	453	119	461	152	441
TTGCCCTTGTCTCGGG	alt_5198_RC	0	0	0	0	0	1	0	0	0	0
AGCGTAATCGAACAAT	alt_5198_RC	214	58	236	204	51	179	33	184	64	156
TCGGGGCCAATCAGCC	alt_5198_RC	76	15	88	81	21	75	22	90	10	61
GTGCCCGAGTCATGTC	alt_5198_RC	525	102	587	611	105	484	124	513	114	455
GTAACCCCTTGTCGCT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TTTGTACTTCACGGAC	alt_5198_RC	242	58	312	259	64	266	72	269	62	199
GACTGTCTATGGCACG	alt_5198_RC	31	3	44	20	8	26	4	35	7	26
ACGACGTTGATCTTTA	alt_5198_RC	107	16	124	102	27	117	18	97	24	98
TTCGGGAATTCCAGAT	alt_5198_RC	284	76	356	318	55	323	55	259	68	238
ATGTTAGGGTAACGTG	alt_5198_RC	78	21	91	78	22	87	14	84	17	67
ATGGTTTTTCAGGCAT	alt_5198_RC	60	18	73	70	10	61	14	62	11	57
CAGCCAGGCGTACCGC	alt_5198_RC	50	18	61	75	33	63	19	51	30	60
GAGGCCACTAACGTCG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGATCATTGCCC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GCTTTAGGTTTGCGCC	alt_5198_RC	162	29	180	144	51	129	32	123	29	125
CATATTGACTCCTCAA	alt_5198_RC	69	26	90	74	31	68	29	61	28	62
GGCTATTTCATTTCGA	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
CAGTCTCGGCTTCTCC	alt_5198_RC	591	115	685	580	159	542	139	525	110	462
GGTGGGTTTGTATCAT	alt_5198_RC	188	51	219	184	41	174	41	191	35	171
CCGCTCAACCATTTCT	alt_5198_RC	77	12	104	84	17	67	27	89	26	61
TCCACTCGTCTATTCG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
ACGTGGGTGTTGGCTG	alt_5198_RC	776	174	876	782	179	647	205	739	161	619
CTTTTTGTCATTGGTT	alt_5198_RC	40	10	50	29	13	29	11	27	12	39
CTAACCATTATAATCT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GGAATCCCACCCTCGG	alt_5198_RC	96	17	107	87	20	84	26	84	18	59
AAATATGTTTTTGTCG	alt_5198_RC	111	25	127	124	23	106	26	89	34	94
TACTGTAACCTCCTGG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TATTTTTGGATAGTTC	alt_5198_RC	167	47	193	175	35	145	30	149	29	132
CACCCAGAGTTGGGGC	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TCATCAACGCCTCATA	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TGGGTTAAACTTGCTG	alt_5198_RC	134	27	190	153	25	133	37	155	38	131
ACAGATGACCTTCCTA	alt_5198_RC	98	24	132	120	19	98	32	125	17	88
CAGAAGTTACACTGAA	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
CCTCGATCTGGATATT	alt_5198_RC	117	22	114	113	23	94	20	124	26	83
GGTTGCCTCCAATCTT	alt_5198_RC	132	33	124	136	28	115	31	127	44	112
AGCAACAGTTCGAAGA	alt_5198_RC	115	26	130	133	24	111	30	100	26	74
ACTTATCAAGACAGAT	alt_5198_RC	125	39	168	144	32	113	39	122	50	116
CTACCGTCAAGTTGTT	alt_5198_RC	7	1	13	7	3	9	3	8	3	8
ACTCAGATTAACTTAC	alt_5198_RC	58	195	95	103	177	76	236	57	225	72
CTGGTATTTAGAAACT	alt_5198_RC	329	79	403	332	83	316	85	323	81	304
TTGACCTTGTCTCGGG	alt_5198_RC	2992	666	3617	3211	660	2775	718	2784	744	2650
CGTCATCAGCCCCGTG	alt_5198_RC	421	80	468	444	81	355	92	419	83	392
CTTTTGAGCACTGTTC	alt_5198_RC	466	117	523	533	117	446	126	459	116	409
ATGGTTCTAGTCCGCG	alt_5198_RC	188	45	235	193	57	185	51	205	62	183
ATGCCTTTCGTTGGGC	alt_5198_RC	177	37	183	208	40	160	40	173	39	160
CCGGAAGAAGCGGCAT	alt_5198_RC	101	25	156	128	17	122	25	114	34	116
GCTACTTCGCTCTTTC	alt_5198_RC	263	74	323	330	82	259	84	291	75	261
GGCGGTCAGGTCCATT	alt_5198_RC	314	67	387	290	67	313	70	312	75	257
ATTATAATGCACTGCC	alt_5198_RC	87	20	104	85	22	93	16	74	21	64
GTCTACACTAGGTTTT	alt_5198_RC	428	82	477	396	98	326	106	349	88	315
CTTTGCTTATGACCAA	alt_5198_RC	115	31	177	135	34	127	32	127	26	124
GGTAACGCATACAGTA	alt_5198_RC	129	27	146	138	25	108	29	112	20	91
TACCAGCTCCCAGCCC	alt_5198_RC	23	3	44	40	6	30	4	31	11	33
CGTTTAACTCACCACT	alt_5198_RC	189	52	306	225	48	203	56	190	72	167
AGTGGATCCTGCCTGG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
CTGCTTTGTTTAAGAT	alt_5198_RC	180	38	193	164	32	154	52	154	29	170
TAAATCAGAATCCTTG	alt_5198_RC	1	9	7	4	8	9	7	7	6	7
CGACTTGGCGAGGGGA	alt_5198_RC	184	36	219	173	46	180	29	179	33	162
GCGCATCATTAGCTTC	alt_5198_RC	423	92	503	483	94	411	74	417	122	405
TTCCGCGTCCCTAAAC	alt_5198_RC	107	26	181	160	48	144	41	131	51	131
AAGAAGTAGAACGAGG	alt_5198_RC	48	14	60	60	14	51	11	41	8	43
GCCGCCTAAGAGGGTT	alt_5198_RC	61	15	75	82	21	49	17	48	24	54
GGAATTGTGCGCAATG	alt_5198_RC	215	60	304	257	48	216	59	241	58	183
TCAAAAAACCATGCGC	alt_5198_RC	326	99	428	355	86	327	66	338	97	330
CCGTGAAGATCAGAGG	alt_5198_RC	19	7	37	23	9	26	9	35	9	28
TCCTACCTCTGGACTA	alt_5198_RC	862	160	1022	907	193	784	198	793	199	747
GCAGTGTCTTCTACTG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TCCATTGCACTTAATA	alt_5198_RC	105	37	129	146	51	98	38	133	54	126
GCCTGTATCTTAATTG	alt_5198_RC	207	49	239	226	53	228	51	239	61	186
CATTCTGCGTGGTTTA	alt_5198_RC	269	47	308	263	51	245	39	247	53	226
GCGTAAAACTGGTGCC	alt_5198_RC	321	56	335	331	75	261	62	273	72	261
ACAGATCGCGTAAAGA	alt_5198_RC	423	123	533	488	116	406	118	434	95	410
TGTCGATATAAATCGT	alt_5198_RC	208	42	242	231	53	208	47	161	39	159
TTACGCCACGCATTTA	alt_5198_RC	29	3	34	29	5	28	6	32	7	34
TACAGTAATGATGGTT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
AGAGGCTCATCTGGCA	alt_5198_RC	139	26	162	127	37	112	19	124	47	125
GGACATAACTCTGGGT	alt_5198_RC	363	80	387	370	79	310	80	296	82	280
GGTTGCCATTCTTTGG	alt_5198_RC	190	41	208	200	34	188	49	175	46	168
TCCAGTCACACTATGT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
TTGATCGGATTTTGCC	alt_5198_RC	144	31	141	121	28	130	28	128	32	104
GCATTTTCTGTTTCAT	alt_5198_RC	187	41	223	214	35	177	42	193	41	159
TTCGATTTCGCGACTC	alt_5198_RC	292	79	349	311	60	274	86	262	82	251
ATTGTCAGGCAGCTAG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GGATTTCTGGTCAGTT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
AACGTTAATCAGGGCA	alt_5198_RC	54	17	80	88	13	63	19	74	13	52
AATATGTACGGACAAT	alt_5198_RC	87	11	87	74	10	70	19	70	19	56
ATTATGGCTCCCGTGT	alt_5198_RC	29	5	29	25	7	24	5	16	1	27
GTGCGATATGCCCTGG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GGGGCTCAAAATCCAA	alt_5198_RC	219	31	226	208	44	186	56	175	40	181
TGGCTAGGCGCTGCAA	alt_5198_RC	297	68	346	335	58	256	80	338	74	283
TACCGATTACATTAGT	alt_5198_RC	102	12	121	117	19	91	33	92	24	85
ATCTCACAGTGTACGT	alt_5198_RC	139	44	243	200	31	193	48	180	47	177
TTGGACTTTATCATCA	alt_5198_RC	471	111	535	514	116	419	103	452	111	386
AGTGTGTTATGTGGAG	alt_5198_RC	126	22	144	117	29	114	44	129	24	95
CTCCTTTTCACGTTTG	alt_5198_RC	259	39	300	275	48	215	41	224	62	218
GGGCCAGGTATATGGC	alt_5198_RC	183	32	200	166	57	148	34	155	34	150
GCTGTCTGGGTACGGT	alt_5198_RC	174	38	180	157	50	146	39	150	46	111
GATCAAGTTGCTGTGC	alt_5198_RC	34	7	44	46	12	44	11	39	3	26
CCTGTCCATCGTTCAC	alt_5198_RC	150	26	184	171	30	147	32	133	55	135
CAATCTCTCAAGGATA	alt_5198_RC	62	11	72	70	30	45	27	64	29	49
TTTACCGTTGCACGGG	alt_5198_RC	140	40	138	139	32	135	42	129	34	95
GTATCTACGTCTACGC	alt_5198_RC	317	73	408	341	71	276	72	307	76	263
CGCTTCCTATCCTTGG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
CGCCTGTCAATAATAA	alt_5198_RC	209	57	232	234	49	194	56	223	61	192
TTGGCTTTCGCTTCAG	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
ACTGTCCACATTCTGG	alt_5198_RC	65	15	67	70	16	65	10	57	17	35
CATGGTTGCTATCACC	alt_5198_RC	102	24	116	104	13	98	24	106	16	96
CGATCTATGGTTATCT	alt_5198_RC	51	10	48	64	8	58	17	57	12	37
TAATAGGCGTTTCTGT	alt_5198_RC	0	0	0	0	0	0	0	0	0	0
GGTCCGCTTGACACTG	alt_5198_RC	236	92	295	248	82	207	89	254	66	204
CTTAACCCTCGGGGCT	alt_5198_RC	99	33	149	108	38	93	22	113	18	86
GCCAATGAGTAGTCAG	ref_5926_new	28	48	32	21	47	16	42	21	53	15
CAACGTCACCGGCTTC	ref_5926_new	42	58	55	35	68	47	55	47	66	43
TAACCAAGTTATTCTG	ref_5926_new	44	74	50	44	63	37	70	34	67	38
TTGATTCGTAGTTGCG	ref_5926_new	9	5	7	4	7	5	5	2	8	4
GCCAACTTTGTACTCC	ref_5926_new	12	29	19	18	21	13	30	21	41	18
CGATTGCATATTATAG	ref_5926_new	13	19	24	15	25	8	14	11	22	14
GATAATGTTTGTCTGG	ref_5926_new	147	197	177	144	165	138	206	137	220	111
TTTTCCCGTGAGTGTG	ref_5926_new	35	54	48	56	69	37	56	37	63	35
ACCCAGTGCTAATGGT	ref_5926_new	93	121	99	97	123	108	106	76	123	81
GGGTCACATCTCTCTT	ref_5926_new	6	10	14	3	12	14	17	6	23	9
GGTGGTCGCGTCGAAC	ref_5926_new	22	26	37	39	41	39	34	21	52	18
ACGTTCACTGCCATAC	ref_5926_new	25	32	35	35	50	21	40	25	44	12
CCGCCACTGCGATGTA	ref_5926_new	1	2	1	3	10	0	8	5	5	3
CGCAGTAGCTTCAAGT	ref_5926_new	0	0	0	0	0	0	0	0	0	0
TCACTTTTGGATAAGC	ref_5926_new	65	82	52	71	71	49	68	42	85	64
TCGTTCCGACCCTGTT	ref_5926_new	18	32	14	23	23	12	26	16	24	21
CTCAATCGGGCCTATA	ref_5926_new	11	44	18	19	39	20	25	14	46	9
TTTCAACTGGCGTTCA	ref_5926_new	6	18	12	10	17	8	16	8	13	8
TTCGATCACCTATATG	ref_5926_new	18	34	32	22	28	18	31	17	32	20
CAAGATCGGGGGTTCT	ref_5926_new	31	61	52	39	79	38	77	45	86	44
TACCGGTCTTCCCCGA	ref_5926_new	0	0	0	0	1	0	0	1	0	0
GAGTCTATTGTAAGCC	ref_5926_new	29	37	32	29	40	27	60	30	36	28
TACTTGGTACGTAAGT	ref_5926_new	5	4	7	3	5	9	9	9	14	2
CACCCAGCCCGGTTGA	ref_5926_new	19	48	29	23	41	33	47	13	29	28
GTATTAAAAACTTGTC	ref_5926_new	0	0	0	0	0	0	0	0	0	0
TAGTTAGCCCATGCGC	ref_5926_new	6	13	11	9	10	9	15	6	18	2
TTTCCCGTATCGTAGT	ref_5926_new	89	82	101	77	120	60	117	70	130	68
TAGAGTGTCCGTCATT	ref_5926_new	0	0	0	0	0	0	0	0	0	0
TATCCGAGGGGTTTAC	ref_5926_new	36	40	30	30	37	29	39	21	37	20
CGGGTCTTTTTAGGCG	ref_5926_new	6	10	5	6	5	5	8	3	8	3
GGGATTGTCGAACCCG	ref_5926_new	3	1	1	4	2	2	1	1	2	1
TCGGATCAGCTTTGGG	ref_5926_new	47	59	39	46	63	21	59	42	80	40
CCGCTGCTTCACTTGG	ref_5926_new	0	0	0	0	0	0	0	0	0	0
TCGTCATTTTCGCACT	ref_5926_new	15	22	33	18	20	15	26	18	28	12
GCATGTTTATGGGGGA	ref_5926_new	20	11	17	27	25	13	17	20	22	12
TCTCGGTCTTTTTATT	ref_5926_new	2	9	3	8	2	7	5	5	4	9
TACCAACATGCCTCTT	ref_5926_new	66	106	72	78	104	77	89	68	128	76
CATCCAGGTCTCACCG	ref_5926_new	41	63	56	26	63	44	71	46	74	48
AGATAGGACTTTAGGG	ref_5926_new	68	96	84	65	124	71	85	61	101	68
ATTTGACTGCGAACTC	ref_5926_new	3	5	7	8	2	6	5	5	12	5
CGAGCAGTTGTTCAGG	ref_5926_new	130	193	155	114	229	145	208	112	202	107
TCATATGGGTCTGTTC	ref_5926_new	26	47	38	38	38	42	33	36	44	20
CAACGATCCTTTTGCA	ref_5926_new	0	0	0	0	0	0	0	0	0	0
CGTCAATTGGTCCCAA	ref_5926_new	0	0	0	0	0	0	0	0	0	0
ATAGGTCCCCATGGGT	ref_5926_new	0	0	0	0	0	0	0	0	0	0
TTGCCTTTAATATGTA	ref_5926_new	11	10	17	10	16	8	18	5	10	6
CTTTTGCTACAATGGG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GGTATCGCAACATTGC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TCTAACTTGAGATTCG	ref_534_reverse	24	19	27	27	17	9	21	19	17	18
CAACAGGTTGGGGGAG	ref_534_reverse	4	7	1	5	6	3	7	8	17	6
GTCGTAACGCTTAGGC	ref_534_reverse	34	51	64	37	55	40	53	34	56	26
GAAACTTTCTTCCACG	ref_534_reverse	29	35	41	27	32	26	37	32	40	32
AATTTTCAATACGCAC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCCAATATTTGTC	ref_534_reverse	40	57	63	44	74	48	63	48	73	52
GGCTGTTCTTGGAAGT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TTACCGTTACGCTTGC	ref_534_reverse	21	26	26	36	17	23	25	21	30	21
AACCTTTAGATCGGTT	ref_534_reverse	4	6	12	3	8	8	3	7	12	5
CATATCGTCAAGGTAG	ref_534_reverse	20	21	14	13	16	17	15	6	28	12
TTGTAAAGACTCATGC	ref_534_reverse	65	97	93	76	108	73	105	78	129	56
ACACCACGTACTGTGT	ref_534_reverse	30	63	49	48	65	51	85	34	69	37
CGTAATTTACGAATGC	ref_534_reverse	26	32	31	22	22	25	35	20	32	19
TCCAATCGCTCAGTAC	ref_534_reverse	44	69	60	37	78	36	89	40	91	38
TTACGCCTCCCGCTGG	ref_534_reverse	7	12	7	7	7	9	7	6	10	4
TATGAGTAAAATGCTG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGTACAGGAGATTGGA	ref_534_reverse	3	2	0	2	2	0	5	1	7	2
AAGAACACGTCCGCCC	ref_534_reverse	31	39	43	39	51	38	54	19	42	30
GGCCTAATGGAGTTGT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TTCTATAGCATGTTTC	ref_534_reverse	32	42	39	31	54	32	41	27	56	41
TGTGTAGGTTCTCATG	ref_534_reverse	18	33	18	20	21	25	31	9	30	11
GGCCCTGTTATTCCCT	ref_534_reverse	30	44	55	25	39	41	34	38	47	26
TCCCACTTCGTAGGTC	ref_534_reverse	72	105	77	91	106	63	95	62	107	65
TTGCCGTTTGAGAACT	ref_534_reverse	7	12	15	8	16	11	16	14	13	5
TCGGTGAGAATTAGAG	ref_534_reverse	46	62	79	66	73	66	66	38	85	59
AGCGACAATCGTTGCT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAAACTTCTGTAC	ref_534_reverse	0	0	0	0	0	1	2	3	1	0
GGCATTTCGTTAGTTA	ref_534_reverse	10	24	27	13	19	11	18	8	28	13
GACAGGCGGGGCCTCC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GCACGGTGCTATGAGC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
CCAATGGAAGCTCGTT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGGCGCTTCGGAT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTTCTCTGGGTAA	ref_534_reverse	2	13	6	6	5	1	3	6	9	1
CGCTTAATTGTCGATT	ref_534_reverse	55	38	44	41	31	36	36	38	47	38
TGGCAAATAATTAGTT	ref_534_reverse	4	7	3	3	13	3	8	3	9	4
TCGATCGCTATTAGCT	ref_534_reverse	5	5	3	5	10	2	6	4	9	1
GCTTGGATGTGTAGTG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GAATGGCTGTCGCACA	ref_534_reverse	68	81	84	80	70	66	81	55	77	62
AAGGACTCCATTTAAG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTTGCCCCCCGTG	ref_534_reverse	8	6	5	15	14	9	16	7	13	14
CGGCTCCTTACATTCA	ref_534_reverse	20	54	30	26	54	23	48	22	50	36
GGATACTGTAGGTACT	ref_534_reverse	3	4	4	2	5	6	2	4	1	3
ATTTCCATAGGTCGGC	ref_534_reverse	24	29	34	23	17	22	35	22	36	18
TAATGTAAACATAAGT	ref_534_reverse	20	13	23	22	24	14	23	18	28	17
CCTTACCCCATTCTCG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TAATAGTGAGCTGTTA	ref_534_reverse	9	26	13	12	17	14	26	17	24	6
AATATCCGACGCACGG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
AACACTTCGGTTGCGG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGTAGGGGTGTTG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GAGAAGCCGTTTTAGA	ref_534_reverse	48	58	39	40	51	54	43	48	51	50
ATAGATCGTTATCTGT	ref_534_reverse	42	32	36	44	49	46	49	32	58	34
TCCTTTTGCGGCGGTG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
ACTAGTCACTGTTTTT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
AAGACCCTCCTCGTAG	ref_534_reverse	11	9	19	14	11	13	12	11	9	11
TGTAATCTGCTGCGGT	ref_534_reverse	4	5	6	1	8	8	10	1	7	1
GTCGCATTCACGTAAG	ref_534_reverse	30	28	26	24	25	30	37	27	47	31
GCCCCTCTCCGTACCA	ref_534_reverse	41	62	57	57	54	33	68	64	58	46
AGAAATTACGATTCAT	ref_534_reverse	18	28	30	17	25	26	32	20	45	32
GCCGACGGATACAATT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGTAGATAGTTGG	ref_534_reverse	9	21	15	12	32	16	25	15	25	18
TTGAAATGTCCAGACA	ref_534_reverse	74	103	68	72	82	42	88	52	101	41
GTCTCAGACATGGTAT	ref_534_reverse	26	31	27	18	31	22	32	16	36	18
TAACACCTAACATGTG	ref_534_reverse	22	25	29	25	38	25	35	12	33	19
CTCGTTTCCGGTAACT	ref_534_reverse	38	82	54	42	57	43	77	41	61	33
ATGCATAATGGACCGG	ref_534_reverse	32	14	26	32	27	19	20	18	39	28
AGGCCGGGGGCGGAAC	ref_534_reverse	31	31	26	18	28	30	31	14	38	24
GAGGCCTTCTCCGACC	ref_534_reverse	17	20	18	16	20	13	25	12	19	11
GAAATCAACACGCCCC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TAATTTAAATTAACAC	ref_534_reverse	57	49	65	45	44	41	60	36	48	26
GAATACGTTGTGTCCT	ref_534_reverse	24	22	10	11	19	21	23	15	23	11
TCAGCCAGTCCTCTCC	ref_534_reverse	3	9	2	5	7	8	6	1	6	2
TTGATGGAGGCAAAAT	ref_534_reverse	63	80	66	61	114	55	100	55	95	52
GATGTTTGAGGGCTTG	ref_534_reverse	38	63	31	48	68	48	75	32	54	31
CATAATCACGGAGGTG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TATACCGCTACATTCG	ref_534_reverse	11	21	16	28	29	27	32	17	23	11
GCCGCTGTCCGAAAGG	ref_534_reverse	5	8	4	10	21	8	11	11	16	3
AAACAGGTTGATCCCC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCTACAATTTCTC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GAACGATCCTTAGCGG	ref_534_reverse	10	26	22	19	23	10	30	8	28	8
GACACAGGAAGGAACA	ref_534_reverse	23	27	28	15	28	25	36	15	22	23
TCACTATTGCCAATGA	ref_534_reverse	22	27	27	23	31	34	38	22	25	18
CAATGCCAGAGTTCCG	ref_534_reverse	64	75	69	39	86	44	81	49	77	45
CCGCTGAGCGGGGACC	ref_534_reverse	248	372	350	259	307	276	359	256	366	230
GACTTAGATAAGGGAT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCACATCAGAACT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGATTACCCGCTG	ref_534_reverse	4	2	4	5	1	2	4	0	1	0
TGCTAACGTCATAATT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
CGCTAGATTCTGCTCT	ref_534_reverse	1	5	2	4	5	8	10	2	3	8
AGGTCCACCTAGCACC	ref_534_reverse	40	55	44	35	54	35	41	36	52	41
GTTATTTTGGGTACAT	ref_534_reverse	1	9	4	1	2	3	4	14	8	3
GGCATTTGAACTCGTC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGTCAACTTCTGT	ref_534_reverse	5	8	4	4	8	5	9	8	6	8
CACTTTCCATACCTGT	ref_534_reverse	9	28	15	14	22	9	25	13	17	12
GTCCAATGGGGATGGA	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TAACCACCGGCATAAC	ref_534_reverse	13	3	5	7	9	6	13	4	9	3
GCGGGTTCCAAAAAGT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGAGCCAATATTG	ref_534_reverse	2	7	14	9	11	8	13	3	7	8
CATGAAAGCTGCTTCT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TACGGTCCCCATCCCG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCGTGTCGTAAAG	ref_534_reverse	52	105	69	53	109	75	126	49	130	73
TGTTCGCGGCGCTAAA	ref_534_reverse	48	74	52	60	57	47	86	53	61	45
CCATCGGTAGTCGGAT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGGGACGTTGCTC	ref_534_reverse	18	19	13	14	17	8	18	9	17	17
ATGCGGGTAGCATGAT	ref_534_reverse	172	237	281	184	291	207	317	169	296	187
GGCGAAACCGTTCTTC	ref_534_reverse	37	58	27	27	56	58	42	41	59	39
CCCGTGCGCTGCTGCT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGACCAGCCACTT	ref_534_reverse	7	21	7	10	19	9	17	13	11	11
TGTCATAACGCGACTG	ref_534_reverse	45	72	82	66	86	59	106	48	71	39
ACTCCTCTCCCTGGAT	ref_534_reverse	73	70	59	59	73	48	62	63	73	44
TGTACTGGGTCCTTTC	ref_534_reverse	29	34	24	17	32	23	33	19	31	20
ACTAGGCTAGTCCGCG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GTACGCGAGCTAAATG	ref_534_reverse	46	74	54	50	65	51	66	29	75	60
GAGTCTCTCCGCGGAT	ref_534_reverse	23	35	37	23	29	25	40	35	35	28
CAATGGCTTTTCGCGT	ref_534_reverse	9	17	9	4	8	6	10	1	4	6
CTGACCACATTAGATC	ref_534_reverse	11	11	4	5	8	2	10	5	8	6
TGCAACCCAGGTCTTG	ref_534_reverse	24	34	21	17	31	20	45	16	27	24
CTCTAGAGCCCTGCTT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TATACGCTGGCCGCTG	ref_534_reverse	25	31	31	32	32	34	25	18	38	25
ATCGTTTTGAAGTTAC	ref_534_reverse	28	16	22	19	29	19	22	14	30	18
TGGCGAGACTGCCATC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCCAGCGGTAATT	ref_534_reverse	39	60	43	44	55	37	53	30	50	39
GTCATGGAGCTGGCAG	ref_534_reverse	28	32	33	32	31	24	33	22	35	30
TCTCTTATGAGTACGG	ref_534_reverse	11	14	9	16	11	10	20	10	11	5
TCTATGATTAAGGAGC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TACTGTCTAATGATAG	ref_534_reverse	34	61	33	49	47	35	56	37	53	29
TTCGACCGTTCTACAT	ref_534_reverse	1	2	2	5	0	0	2	0	4	1
TGGGGCCATCTGTTCT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
GGTCAGTTCTGACGTT	ref_534_reverse	6	14	7	4	7	9	11	5	14	4
AATCGGACTCTCGTCG	ref_534_reverse	23	35	38	53	28	30	31	25	42	42
TCAATGGTCATCATGA	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TATCTGAACCGTTCGC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
AACGGTCCAGCGAGTT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGTAAGCGCCGTG	ref_534_reverse	0	1	0	1	0	0	1	0	2	0
GAGGTTGTCCTCCGTA	ref_534_reverse	26	30	33	32	35	28	44	25	44	13
TATGCTCGTCATTTTT	ref_534_reverse	5	19	19	18	10	20	29	14	29	9
GCCCAAAACAACACCT	ref_534_reverse	19	36	23	12	40	15	38	32	39	20
GGCTCAGTTAATTAGG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TAACTTGTGTCCATGC	ref_534_reverse	11	19	16	11	16	15	28	8	19	13
GCCATGTTTAATTCTG	ref_534_reverse	35	28	39	38	48	29	46	36	51	35
AAATGAAGTACTCATT	ref_534_reverse	7	8	7	5	10	2	10	6	7	6
CTACTCGTAACTACTG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTTTCCTCTTACA	ref_534_reverse	105	136	131	125	131	111	154	95	153	87
ATGTTTACAAGATAGA	ref_534_reverse	68	50	86	70	59	68	57	64	53	50
GACACACTTTACCCTG	ref_534_reverse	4	8	4	11	9	3	10	5	7	8
GGGATCGACCCGACGT	ref_534_reverse	15	20	14	17	26	14	16	11	13	12
GATCGCATTGCCTTGT	ref_534_reverse	13	24	19	16	28	19	29	19	29	19
GTTACTTTCGTTCAGA	ref_534_reverse	152	184	179	172	201	135	238	149	183	158
GCACTCGTTGATTTAA	ref_534_reverse	9	9	0	3	7	1	7	6	2	0
CGAGGTGTCTGTCATT	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTTAAGCCTAGAG	ref_534_reverse	9	18	12	9	9	10	18	8	16	12
TTCAAGGGGCCCAGCA	ref_534_reverse	13	18	17	11	6	9	20	7	26	13
TCATTCTGCAGTGGGC	ref_534_reverse	17	55	28	23	51	26	63	17	59	23
AGTGTTAGCATAGATT	ref_534_reverse	7	12	11	6	13	5	9	3	12	5
TATTCTCAATTCGCCT	ref_534_reverse	24	30	30	31	30	13	35	18	32	24
TTGTGCATTCTAGAAC	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTTTTTCGAGTCC	ref_534_reverse	61	91	80	59	86	56	82	59	78	42
CGATGCACCGATACTA	ref_534_reverse	46	64	48	56	75	53	71	50	79	66
ATAGCGGCAAGTATTA	ref_534_reverse	11	10	9	7	5	3	6	7	7	5
ATGTAGACACTTTCCA	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCTTGGGGTTCCG	ref_534_reverse	15	22	23	21	27	24	20	21	33	26
ACATGGCAGTACGGTA	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAAGGCAAGTGTC	ref_534_reverse	81	83	75	54	67	62	89	55	108	57
TCTTATTTAATGGGAA	ref_534_reverse	44	62	64	55	59	44	81	54	82	42
CATCCGGGACGTTTCT	ref_534_reverse	27	42	24	30	37	21	38	20	42	26
GTGTCCCTTGGTGGTC	ref_534_reverse	25	24	40	20	35	31	40	30	38	20
GTGTTCTTCTAGAACA	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
TGAATTCCGTTTCTAG	ref_534_reverse	0	0	0	0	0	0	0	0	0	0
CGCTATTTAGTAGCCT	alt_2028_fdr	31	15	30	23	23	14	35	37	32	26
GGCCACTCTCTGCGAA	alt_2028_fdr	113	110	138	105	126	127	115	107	114	85
GTCTTCGAAGTATCGA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CGAACGCAGGCCGCCT	alt_2028_fdr	27	28	37	31	27	26	29	27	26	33
TTTCGAGAACCCTCCT	alt_2028_fdr	9	7	3	10	9	3	8	6	5	8
CGGATGAATTTAAGGT	alt_2028_fdr	332	333	444	414	361	363	346	372	359	327
CCCTGTGCACCACGGA	alt_2028_fdr	24	33	46	34	33	28	45	41	32	25
GATGAGCACTTGCGTT	alt_2028_fdr	25	32	27	22	24	17	24	17	15	18
CCTAACATGTCCTTTT	alt_2028_fdr	29	31	32	32	16	19	20	26	28	21
ATTCATTCCATTGGCA	alt_2028_fdr	17	12	36	12	11	20	19	22	15	8
CGTCGAGGAGAGGTAT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCCCACAAGGTACGCT	alt_2028_fdr	13	9	15	8	8	9	12	10	13	7
TTCTGTCTTGGCAGCA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TAATCTCTGTTCGTTA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CTGATAGTTGCCTACC	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GTTAATTTTCGTGTCT	alt_2028_fdr	131	123	177	156	107	132	136	118	127	119
GGCGTGTATGGTGGAG	alt_2028_fdr	122	79	117	94	71	123	126	95	104	86
TATCCCCTGTCACCGT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTCCCATGTCGAC	alt_2028_fdr	122	116	167	140	113	111	116	112	129	132
AGTTAAACAACAATGT	alt_2028_fdr	7	15	24	16	15	12	12	17	14	13
ATTTTCTTGAGATGCC	alt_2028_fdr	116	66	120	93	76	75	82	99	77	84
CACCTCTATTGTCCTT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTGATGCCCAGCT	alt_2028_fdr	23	31	36	33	37	20	34	26	39	25
CGCAATCACACTTATT	alt_2028_fdr	46	47	63	42	40	32	54	50	44	40
TCCAGCCGGGTTGTTT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTATTGGATTCGCTGT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CATCATGTTTCAGCGA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCCTATCCGGAAA	alt_2028_fdr	15	23	13	10	8	16	24	13	18	10
GCTTCCCGGCTAGAAT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTAGCAGTTGACA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
AGATCGCTTTCAATCA	alt_2028_fdr	18	17	19	26	13	13	11	18	21	16
GTGTTTGGCATCTGCC	alt_2028_fdr	5	2	3	6	3	3	2	8	6	6
AGTCTTGAAACACAGT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTTGAGCTTCCCGTAT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
AAATACGCATCCTATC	alt_2028_fdr	5	6	8	3	5	3	2	2	4	3
CGCGACGAGACATTGT	alt_2028_fdr	6	10	13	21	13	2	8	8	10	7
TTTAATATCGACTTTC	alt_2028_fdr	49	67	83	71	42	74	52	54	56	50
GGAGGGAATTCACAAC	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGCCTGCTATACG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CGACGGTACATTCCTG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TACAGGTCTCATTGTC	alt_2028_fdr	276	241	315	247	270	258	240	215	265	237
ACCGACTGGTCTTCCA	alt_2028_fdr	35	54	35	46	84	41	87	42	75	20
TAATGCCATTTTTCGC	alt_2028_fdr	12	17	20	24	9	21	12	11	18	14
AAGGTTTTTAGAGGGC	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GTACATCGTTGACTTG	alt_2028_fdr	50	61	70	61	79	54	61	69	62	60
GATGAAAAGAGCAAAT	alt_2028_fdr	46	41	86	59	37	34	40	58	33	50
TGGGAGTGGCTCCGCT	alt_2028_fdr	27	27	40	30	20	22	42	23	32	32
TTTCACGCTGTGAAAT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCTTGATTTGGAC	alt_2028_fdr	51	52	44	54	39	28	57	30	56	34
GCTGACGGGGTTTGAA	alt_2028_fdr	13	12	32	22	18	24	21	23	10	18
CGTATTTTTCGGCCCT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GGCACACGTTCAGCAC	alt_2028_fdr	4	3	1	11	4	1	5	7	6	2
GCTCGCGAGACATTAT	alt_2028_fdr	4	4	5	2	5	3	0	4	1	1
ATACCCCAGCTCTAGA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GCGTATCCGTGGACAT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TGATAAATCTTAGGAC	alt_2028_fdr	12	15	16	12	9	10	4	10	12	9
TGGCGGTACACAGGTA	alt_2028_fdr	68	56	70	64	45	51	58	73	56	50
ATAAAGTACCATGTCG	alt_2028_fdr	37	34	43	30	33	28	25	23	22	18
ACTCGTCTCTGTTCAG	alt_2028_fdr	8	6	15	6	8	7	14	2	11	8
AAATCGGTGGTACCGT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
ATGATTTGTGTGACGT	alt_2028_fdr	36	40	52	40	30	37	36	29	47	21
GACATACGTACCGGGT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTAATGTATTTTA	alt_2028_fdr	6	4	10	3	7	5	10	2	4	3
TCTTTATACTGGATGG	alt_2028_fdr	28	16	39	34	23	22	27	20	21	29
GGTGTATATGCGTTAA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GATTCCCGAGACTCTG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CACATTACTTAGTGCT	alt_2028_fdr	14	19	23	20	17	30	22	17	16	16
CCAAAGCGGATCAATG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GAATGCGAACCCTAGT	alt_2028_fdr	34	32	65	56	41	51	43	47	37	39
AGTTCTATGGTTCAAC	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCGTGGACAGTGC	alt_2028_fdr	22	32	28	15	25	14	33	12	28	25
CCTGGTCTCGGTTGCA	alt_2028_fdr	4	7	17	7	5	5	9	7	13	10
GACTGAGGAGGTGGTA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTCTGCTAAATA	alt_2028_fdr	23	13	28	19	28	20	23	33	18	15
GAACGGGGATTTTATA	alt_2028_fdr	40	59	61	58	45	45	56	53	57	47
AGGCATTAACCACATT	alt_2028_fdr	374	311	518	459	354	377	340	383	296	365
CACTGTACGTCTTACT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CGTATACAAGTGCCTA	alt_2028_fdr	42	32	55	58	48	40	33	47	43	42
CCGAAGCTTTTATGTC	alt_2028_fdr	64	36	69	47	44	59	49	49	65	44
GTATACCTCTCGAGCG	alt_2028_fdr	61	54	69	73	66	53	62	67	74	59
TGCTCATTCGTCCGAG	alt_2028_fdr	68	65	69	45	55	63	68	67	56	49
GCAGTTGCCGTGAGAT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GACATCCTTATTTTTG	alt_2028_fdr	5	15	8	9	9	5	14	4	22	3
TTGCATGTCAGTGCTT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCAAAATCTAACATTC	alt_2028_fdr	212	163	228	176	191	198	218	193	159	185
GTAATTAGCTACACTG	alt_2028_fdr	17	16	19	14	8	10	10	11	11	13
GGTCTCCGTCTATTGC	alt_2028_fdr	5	14	14	13	8	11	4	11	14	10
GTCTAAACGCACGGGA	alt_2028_fdr	12	11	9	9	13	11	21	18	16	17
GACCGAGATCTTCCTT	alt_2028_fdr	35	35	33	49	26	33	32	37	29	40
TATCCACAGGTCTTAT	alt_2028_fdr	24	24	35	28	19	16	39	20	30	23
GAGTTAATGACCTCGG	alt_2028_fdr	28	24	30	32	30	18	30	32	25	24
TGGGTCTGAGCTTCAG	alt_2028_fdr	34	32	33	27	23	34	23	27	43	35
ACTTATGAAAACTAGG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTTATCACGCCAT	alt_2028_fdr	3	2	4	4	3	3	5	5	4	4
GCACTCAACCGTTAGT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGGTTATTAGGGG	alt_2028_fdr	76	78	82	71	60	76	66	56	64	56
TGATCGGCGTTTATGG	alt_2028_fdr	46	42	60	52	39	37	51	52	33	43
CTGTTTTTGAAGTTAC	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCGGGTTGCCCCG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGAAAGCCTACAT	alt_2028_fdr	3	1	1	3	1	2	1	0	1	0
ATTGTTGGTTTCATTC	alt_2028_fdr	69	64	100	96	54	82	71	68	69	67
CATGTGTGTCATCCCG	alt_2028_fdr	20	17	27	28	17	20	20	19	13	22
ATGTAATATCCTCCGG	alt_2028_fdr	0	1	1	0	3	0	1	0	1	0
TGTCATACAATCACTG	alt_2028_fdr	39	54	44	45	73	41	40	44	53	40
ACGTAATTGCTACTTG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GACGCAAACTGCCATA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGGCCGGCAGAAA	alt_2028_fdr	18	42	15	17	56	6	37	11	47	11
GAGGTGAGTCCGAATC	alt_2028_fdr	74	60	91	69	72	75	77	89	72	67
GTAATCTTGCTGCCTT	alt_2028_fdr	101	94	119	99	102	80	100	95	92	85
ATACAGACCCATTGAA	alt_2028_fdr	13	15	22	14	22	20	22	14	16	16
GTCCGGATTGAATGAA	alt_2028_fdr	7	6	15	15	11	9	6	13	19	8
ATTTTCTCTAAAGCTT	alt_2028_fdr	107	97	165	139	121	110	118	131	114	119
TGGATGCTAGAATTAT	alt_2028_fdr	26	17	32	25	27	36	42	29	21	26
AAACCGTACAGGTTGA	alt_2028_fdr	66	39	66	45	46	39	51	50	34	46
TCATCTGATAATCGTG	alt_2028_fdr	13	24	22	15	19	18	13	12	18	12
CGGAGTTTAGGCCACA	alt_2028_fdr	89	73	102	83	82	82	75	64	99	80
CGCAGAACTTCTTGCG	alt_2028_fdr	194	180	185	172	164	150	173	174	163	177
TAATTTTAGCGACTTG	alt_2028_fdr	15	11	14	12	12	11	10	11	9	5
TAGATGTAGGGCTAAC	alt_2028_fdr	15	20	18	20	17	17	14	11	12	12
CGTCCCCTTGGAATAC	alt_2028_fdr	0	0	1	0	0	0	0	1	0	0
TGTCCTTCCTGTTGCA	alt_2028_fdr	45	40	65	58	43	32	40	43	39	42
CGGTAATCGATCCATG	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CCCAACTGGCATTCCA	alt_2028_fdr	19	23	30	32	24	21	18	17	14	28
TCATCGGGACACTAGC	alt_2028_fdr	22	34	39	33	25	22	30	31	19	33
ATTAGCAGATCCGTAG	alt_2028_fdr	13	12	21	12	9	11	10	12	16	14
ACGGATGATGATGAAG	alt_2028_fdr	86	56	110	86	61	92	79	96	74	69
TAGTGATCCTGAGTCT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
CATGTCCTGCTACACT	alt_2028_fdr	3	6	6	8	5	11	10	6	10	4
TACTACAATCTAGAAC	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
ATACGTCACGGTTCAT	alt_2028_fdr	32	30	20	23	14	21	26	33	28	23
GACACAGCTTAACTCT	alt_2028_fdr	416	322	432	406	370	396	352	341	382	303
CTGAATTAGGACATAC	alt_2028_fdr	56	64	68	55	44	73	47	61	60	63
ACCCAGGTAATACATC	alt_2028_fdr	29	24	54	46	29	51	31	36	37	38
TTATACCATCCTTCTT	alt_2028_fdr	60	43	59	49	36	56	38	49	50	41
CACTGTTCTATACACG	alt_2028_fdr	9	19	13	7	14	10	6	9	12	10
CGACGCCGTAGTGAAG	alt_2028_fdr	3	0	1	0	1	2	0	0	0	2
CGCCTGGTAGCTAGAC	alt_2028_fdr	6	18	11	11	11	12	15	13	14	8
CGTATTTAACCCATTG	alt_2028_fdr	14	17	18	14	19	9	18	14	17	12
GCGCAAATTATGACCT	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
GGGCAGGCAAAACTGC	alt_2028_fdr	102	116	123	121	111	116	87	103	97	107
CGGGCTCCGTGGCTTT	alt_2028_fdr	70	53	72	61	57	44	51	65	74	52
GAGACCCTGTGTACGA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TCAATTGGTTCGCGTA	alt_2028_fdr	0	0	0	0	0	0	0	0	0	0
TTCCATATCGCTTTGA	ref_5723_new	312	437	378	287	428	255	477	259	437	242
GCTGGGATTGCAATCC	alt_5723_new	31	39	44	27	57	33	56	33	40	19
TCCCGCCCAGCTACTA	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TGTTAGGCCACCCAGG	alt_5723_new	49	48	53	43	55	25	50	33	41	28
TGTTTATTGTCTGCTT	alt_5723_new	49	126	90	53	120	59	111	44	85	50
TTCGATGGTTTAGGTG	alt_5723_new	21	25	10	13	14	9	35	10	24	7
TAATCAACGCTCTTGC	alt_5723_new	29	26	24	25	18	10	32	23	28	16
TTACGGCATCTATGTT	alt_5723_new	2	9	6	5	9	4	7	2	6	1
TCTGGACTCGTCTCAT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
AACCTGGTGTGGTACG	alt_5723_new	0	0	0	0	0	0	0	0	0	0
CCAGCTAAGTGTCGCT	alt_5723_new	10	24	18	4	16	9	19	6	14	3
TCCCAAGTATGCTTGC	alt_5723_new	12	42	21	28	41	24	38	20	50	26
CGAAACACCGTAAACT	alt_5723_new	9	18	12	12	21	5	15	7	15	12
CCCTACTTTGTTTCAT	alt_5723_new	28	73	68	43	63	52	88	27	70	37
TCTGTATTGACTCGTA	alt_5723_new	54	82	51	53	91	47	93	51	91	41
AAATGATTCCGGGTAC	alt_5723_new	44	88	32	36	78	31	89	41	123	26
TCGTTAAAACAACTTA	alt_5723_new	30	38	24	16	33	22	31	11	37	15
GCTATTGGCAGTGTAG	alt_5723_new	0	0	0	0	0	0	0	0	0	0
CAATTCTACCACAGCT	alt_5723_new	56	92	68	61	95	41	106	46	77	44
GCATCAGCAATGCTGC	ref_5723_new	52	61	71	52	101	53	82	49	65	60
TGTCTCCTGCCGGCCG	alt_5723_new	27	35	40	28	34	37	33	20	58	27
TCTAGCGTTTAGACTT	alt_5723_new	10	27	15	11	40	8	44	10	28	3
TTGATTTCGTTCCCGT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
CCTACAGCACATGGTA	alt_5723_new	10	7	7	4	9	8	16	6	7	3
CCATTAAAGTGTTTGA	alt_5723_new	8	28	12	15	36	8	39	9	40	8
AATTAAGTGGGTTCTA	alt_5723_new	7	19	10	6	11	9	16	8	18	4
GAAGATCTTTGGCGAC	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TCGTGTTGCATTGCAT	alt_5723_new	32	47	36	21	43	23	57	13	51	20
GACTCATTAAGCCAAA	alt_5723_new	40	54	57	42	61	48	73	42	75	34
ACATCACTCAACCCAA	alt_5723_new	0	0	0	0	0	0	0	0	0	0
GTATCCCTTATCTGGA	alt_5723_new	2	5	5	6	4	2	10	6	14	2
CCGAACTTTCAAAAAA	alt_5723_new	24	63	27	34	74	24	55	22	95	16
CGCGTGCCTCTATTTA	alt_5723_new	4	14	13	9	22	14	7	3	14	9
CTAGATTTACTTTCAA	alt_5723_new	46	105	68	39	103	55	109	40	108	41
ACTAAAGATCCATATG	alt_5723_new	35	38	39	34	55	40	50	31	49	21
CCCCTTGTCTTCGACC	alt_5723_new	0	0	0	0	0	0	0	0	0	0
GATTAGTCTAGAGCGT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
CGGGGTAAGTATGCCA	alt_5723_new	41	62	45	49	68	24	49	41	59	40
CGCGCGTTACATGTTG	alt_5723_new	10	8	5	8	7	14	8	9	5	1
TTCTCAGCTGTGGACC	alt_5723_new	54	106	77	78	109	72	101	55	105	58
GGTGTGTTTATTTTTG	alt_5723_new	53	59	47	39	74	34	91	30	83	47
CGAGTGTGTCTGTCAG	alt_5723_new	0	0	0	0	0	0	0	0	0	0
GTGCGGCCTCCCCCGT	alt_5723_new	8	6	4	1	4	3	7	0	5	5
CCTAGTGAGTGGGAGA	alt_5723_new	29	54	34	19	35	22	43	21	47	17
TTCCACTAGCACACTC	alt_5723_new	3	25	6	1	35	4	24	7	34	4
GTACGGCCTCCCCCGT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TTTGGATAATAGGGGG	alt_5723_new	24	38	31	21	27	30	54	13	41	13
CAGAATATGGTGCTCT	alt_5723_new	12	18	13	7	9	9	19	13	18	17
AACTCCAGTCTCGGAC	alt_5723_new	15	12	9	9	13	8	17	5	19	11
AGGTGCGTATGGCTGT	alt_5723_new	21	42	39	23	50	33	44	31	52	23
AGTTTTGGTCCGTTAG	alt_5723_new	31	51	52	32	54	29	68	33	75	46
AGTTAGTGCAGCGTCA	alt_5723_new	48	48	29	39	37	29	61	31	54	35
CCCTCTTAGGCAAGGC	alt_5723_new	45	63	50	54	76	52	55	44	87	42
ATGCCTAGGGGCCTCC	alt_5723_new	12	23	22	22	29	17	43	17	24	21
TCCTGCCGCTCGCCAC	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TACCCAGACTATAGGC	alt_5723_new	17	20	9	13	22	4	22	11	20	11
CTCAGCTCTTTTGCGC	alt_5723_new	0	0	2	1	3	1	0	2	4	1
TATAGGTAATATTCTT	alt_5723_new	23	31	21	19	24	25	33	15	45	17
CTCCCCAGCTGTCCTC	alt_5723_new	6	40	14	10	37	10	25	4	30	12
GTGTCATCTTGATATC	alt_5723_new	25	21	38	27	38	21	42	26	33	18
CTGCAGGGTCCGGGTC	alt_5723_new	12	22	7	14	18	14	21	19	23	13
TATGTGGAATCGCGTA	ref_5723_new	37	59	43	49	60	44	80	50	93	33
CCAGATTTTATATCAT	alt_5723_new	8	6	7	6	8	5	10	3	14	6
CCGGGAATGACCAGGT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TTCGCCACACTGTCCA	alt_5723_new	5	14	9	5	18	9	11	12	21	6
TCGTTATGGTGTGTTA	alt_5723_new	41	66	48	39	65	34	97	44	81	34
CAGACGTACGATCTAC	alt_5723_new	21	39	17	23	35	20	51	25	33	16
AGTGGTCTATAGCTAT	alt_5723_new	45	65	42	43	76	40	95	33	86	42
GGCAATGCCACTGAAA	alt_5723_new	83	165	118	107	164	100	179	107	182	101
GTCGTAATTATACCCT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
AAGGCTCGCTTCTATC	alt_5723_new	0	0	0	0	0	0	0	0	0	0
GTCCGGCGATACTTTT	alt_5723_new	6	8	9	7	15	10	13	8	12	4
TTTATTGTAAAATCAG	alt_5723_new	20	32	27	21	29	28	30	15	27	24
CGTGTAATCGGGAAGC	alt_5723_new	12	16	8	9	16	10	12	9	16	16
ATAATTAGGGGAACGG	alt_5723_new	34	57	30	37	72	20	64	31	76	28
ATAGGGTCCCACGTGT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TTGTCGCGGTAATGCT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TTAGTAACATGTGAGT	alt_5723_new	35	48	36	32	60	40	60	31	71	25
TCGAATCGCGACTTAG	alt_5723_new	3	3	3	1	3	3	9	1	2	0
CTATAAGGGCGCCCTC	alt_5723_new	27	39	28	24	45	19	33	22	36	19
ACGGGATTTTGTGGAA	alt_5723_new	16	38	23	25	34	24	40	24	44	25
AGCCAATACGTGCGCC	alt_5723_new	11	22	15	8	10	11	15	6	29	5
TGACCGGAGTGCTAAT	alt_5723_new	33	44	38	23	69	29	46	23	44	19
TTCTGGGCAGTGTAAC	alt_5723_new	5	6	8	0	9	4	2	5	6	1
CCACATACAGTTTTAT	alt_5723_new	24	73	26	32	70	24	66	27	70	19
CTTAGGTCCTTTTTGG	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TGATTAATTCCTTCAG	alt_5723_new	29	41	35	22	47	17	37	21	31	18
TCTTCTACCGTATTAC	alt_5723_new	16	34	22	21	32	20	49	22	27	9
TCCATTGTTGGCGGCA	alt_5723_new	8	4	4	0	5	1	4	4	3	0
TAAGGTTCACTTCGAC	alt_5723_new	27	45	30	20	42	26	57	20	41	21
GTGGACCTTCAATATA	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TGGCTGGGTCGTATTC	alt_5723_new	13	25	29	18	21	17	25	8	18	13
TTACTTTAATAGCTTA	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TTTTATTCCGCGGTGT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TAACGCAGCTATAACG	alt_5723_new	20	15	15	9	23	5	19	16	24	11
ATTTAGGGGTTCATTT	alt_5723_new	32	42	42	31	49	24	38	29	54	32
GAAGCAGTCCTTCATA	alt_5723_new	17	20	11	15	23	21	23	12	29	12
GTTCAGCAGTCCTCGA	alt_5723_new	4	8	10	3	19	6	10	10	18	10
TGGTACGTTAGCTCAA	alt_5723_new	23	57	44	47	37	31	36	34	51	24
TTTTTATAGGGGTGAT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
AAGCTATTATGTACTT	alt_5723_new	22	42	34	19	40	17	37	22	39	19
GGATCGGTAGCCGTGG	alt_5723_new	0	0	0	0	0	0	0	0	0	0
CTCCTTCGTGGTGTAA	alt_5723_new	80	166	106	76	166	57	214	81	192	69
TGAGGCCACTATGGGG	alt_5723_new	3	7	8	8	8	4	11	3	10	4
AGGCCTTCTATTCGTC	alt_5723_new	4	10	9	11	9	11	8	10	15	6
TTGGTTTTCTAGTGTC	alt_5723_new	0	0	0	0	0	0	0	0	0	0
CGAAATGCTCAGGGAG	alt_5723_new	27	51	57	44	76	32	79	20	80	39
TTCGTTATCTGTCTAG	alt_5723_new	43	60	35	29	50	40	60	21	68	33
TATGGGCCACTATGGT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TACCTTCGCATACTAT	alt_5723_new	9	18	8	10	11	2	9	6	8	2
GTCATCTCCGGTTTGA	alt_5723_new	11	8	12	10	16	6	22	7	21	6
TCGTACACGTGTGGGG	alt_5723_new	1	4	7	0	4	1	8	0	5	0
TTTATCTAGACCTCCA	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TGGGTTAGGGCCGCTA	alt_5723_new	20	31	12	19	24	24	24	18	36	20
ATTTAAGTTTTAGGCC	alt_5723_new	1	13	11	6	7	10	6	8	7	6
AGTGTATTTCTAGGGA	alt_5723_new	0	0	0	0	0	0	0	0	0	0
CTGGATTTACCTCTGG	alt_5723_new	41	88	41	49	86	49	87	46	92	47
TTTCTTGGTGCGCTAA	alt_5723_new	45	42	29	40	46	24	44	22	52	38
GCTAATGTGACTCAAG	alt_5723_new	44	81	56	45	87	50	73	46	63	35
CCATTGGGTACAGGAT	alt_5723_new	73	102	80	52	100	61	104	55	80	51
CCGGATAGGAACTGGG	alt_5723_new	17	25	20	12	25	18	27	12	33	17
GAAACTACAGCAGGCA	alt_5723_new	6	17	9	6	16	9	12	14	17	11
ACTTAAAGTGGGTCTA	alt_5723_new	5	5	3	4	4	2	10	5	4	4
TGACTCACAGAGCCTT	alt_5723_new	18	45	23	26	41	18	47	21	69	14
ATTCTGCCACGTCTTT	alt_5723_new	0	0	0	0	0	0	0	0	0	0
TAAATTGAAGCGTCTT	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TCGAGGGTCCCCAGAA	alt_5623_new	10	11	12	12	20	13	17	14	26	9
TCGCCTCGGTAGGTTT	alt_5623_new	52	77	58	32	83	63	91	37	74	44
CCTGGACGGTGGTGCT	alt_5623_new	6	5	8	6	7	7	10	3	3	2
CTTTGCTCAGCTATGC	alt_5623_new	14	29	15	20	26	18	22	18	38	13
GCAGACGTCCCACGCA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GGGCAGCATTCGGCGC	alt_5623_new	0	0	0	0	0	0	1	0	0	0
TTCTGACGTTGTAAGT	alt_5623_new	1	0	0	0	0	0	2	1	0	1
AGTCGGTCACGTCCTG	alt_5623_new	11	15	15	15	21	16	23	10	31	16
AGCGTCCATAATACAC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CGAGTGTCACAGCCTA	alt_5623_new	5	17	16	6	14	8	9	10	9	4
TCCACTATCCTGCTCA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TACACATGTCATTCGT	alt_5623_new	120	217	135	124	191	119	195	116	226	141
TCATTTTTCTTTCGTG	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CGCGATTGCGTCAATT	alt_5623_new	7	19	10	10	18	14	15	9	21	11
GTAGGTAACCGTTGAT	alt_5623_new	26	18	29	21	28	12	25	9	29	13
AACCGGCGCGAGCGCT	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GACCTGCCCGGTTAAA	alt_5623_new	23	46	23	22	40	15	37	22	34	15
TTTCATGGTACCCCTG	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TTATCGTATCATTGCT	alt_5623_new	14	31	14	15	27	12	25	14	26	18
CAATTGATTAACGGGC	alt_5623_new	26	46	39	25	52	38	60	31	31	32
TACTCGCAACCCCGCG	alt_5623_new	10	14	13	7	12	10	13	5	7	9
CGGTAGTCAATAGTGA	alt_5623_new	189	306	212	189	308	192	310	151	340	157
ATTTCAGCCTCAGTTA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GACCAAGTCGGCTCAG	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GGGATTGTATTCGTTG	alt_5623_new	8	1	1	4	1	2	3	2	6	1
TTAAACCTAATATAGT	alt_5623_new	27	28	13	19	39	17	28	11	25	10
TCGAGGTAGACACGTA	alt_5623_new	84	87	77	88	131	93	139	72	93	71
GGTTTGAGCGGTTTTA	alt_5623_new	42	82	46	37	92	42	84	33	91	27
CGTCGTTATACCAGTC	alt_5623_new	5	15	4	2	13	4	11	0	10	6
ATCTGGCTATAGTCGA	alt_5623_new	23	27	21	15	27	16	32	21	27	12
TGTTCTCTGCTATATA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CATGCTTCCAACTTGT	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GCATACGCCTGTGTGG	alt_5623_new	51	73	36	42	73	34	74	36	73	35
GATTCAACACAGGTCG	alt_5623_new	1	2	3	1	5	2	7	1	5	1
CATTTTTCCGAGCGTT	alt_5623_new	10	21	16	15	21	11	20	6	21	9
TTATCACGCATCGATT	alt_5623_new	60	80	68	62	97	61	93	48	89	59
GTGCCTAACTCTATCC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TTTCGCTGCTGCACCA	alt_5623_new	12	19	22	15	24	23	28	15	29	8
TGTAATGGGCTGCCGT	alt_5623_new	9	22	19	12	18	15	24	10	28	15
ATGATCTAGAGCTCTT	alt_5623_new	51	68	53	50	96	39	105	39	80	30
GCCGTTAACACCGGTT	alt_5623_new	31	60	41	43	60	36	74	31	86	39
TTCTTAATGGGCGAGG	alt_5623_new	4	7	1	6	5	3	5	0	6	3
TTGTTGTAAACACGGC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
AACTTGAAGTGCAATG	alt_5623_new	25	37	23	25	44	23	45	25	46	24
ATTGTCAACAGGGGCA	alt_5623_new	20	25	24	11	35	8	29	13	25	20
CTGTCTTTTAGATCGG	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CATGTGTCATTTGTGG	alt_5623_new	18	27	16	9	43	12	28	9	21	12
GCTGCATAAAAGCCCA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CGAGGGTTGTTTTTCA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GGTCGGTCAGAGCCTT	alt_5623_new	25	42	39	25	46	26	60	37	68	33
CAGGACTGACGTGGAG	alt_5623_new	36	59	55	18	65	36	38	43	63	35
GTTCTATGACGGAGCT	alt_5623_new	13	15	11	6	15	13	17	2	20	7
CTGCATGCTTCATCAG	alt_5623_new	16	18	11	15	27	11	33	10	31	13
CTTCCGATTTCGAGGT	alt_5623_new	12	32	29	32	36	22	48	29	42	23
ACGGTGCGAGATACAA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GCGTGATTCCAACTAG	alt_5623_new	13	25	22	25	28	8	23	8	32	21
AAGGGCGCACCTACAT	alt_5623_new	4	7	4	3	4	3	9	7	6	3
GTTAAGAAAGTTGACG	alt_5623_new	23	39	31	25	39	20	56	22	45	21
GCAACGAAGTGGTGCC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CACTTCGAGAGGCGGT	alt_5623_new	35	39	21	25	41	25	43	29	29	16
TCTGCGACTGGAGTCC	alt_5623_new	6	8	19	9	14	11	24	12	17	14
ACTTCGAAATATCCGG	alt_5623_new	32	53	15	20	46	19	44	25	47	14
CCATTCCAGTGCACCC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TCGGACACGCATAATA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
GTTCCTTGCGGAAACA	alt_5623_new	3	3	3	3	14	1	12	0	0	12
CCTGGTGCCCGACTGG	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TTCCTACAACCGAGTA	alt_5623_new	10	18	17	15	28	5	15	16	21	9
GTTAGTTTAGCGCACT	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TTGATGGTGAACACGT	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TCTAGGCTGCGATGGT	alt_5623_new	6	11	7	9	12	5	18	7	20	3
TATCCTTCGTATGTGA	alt_5623_new	7	11	7	9	9	6	5	3	11	4
GGCTTAACCCGACGTT	alt_5623_new	26	68	36	47	65	37	68	33	70	28
GGCAGGTTCAATCAGT	alt_5623_new	6	19	10	1	15	7	13	2	10	9
TATATACCTAGGTACC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CCGCGCATGAAGGACA	alt_5623_new	13	17	26	23	13	20	14	25	13	22
TGTCTGCCCGGTACGT	alt_5623_new	15	9	15	11	21	11	29	12	16	3
GCCCTGCCCGGTTAAA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TGAACGAAGGATGCCG	alt_5623_new	42	47	44	28	49	29	71	28	58	37
TCGAGGTAGCCACGTA	alt_5623_new	0	0	0	0	0	0	0	0	0	0
TTGTCACTCGCGCGCG	alt_5623_new	11	25	22	3	26	22	30	12	30	7
TGTATATTCCGTTTTT	alt_5623_new	28	34	29	33	36	30	46	20	44	24
TCTGGACACACATTCA	alt_5623_new	46	112	58	48	90	49	135	45	132	42
TTAGCTCATACCGAAC	alt_5623_new	16	35	24	35	41	14	39	15	28	10
TCCCAGTCTTGCCTGT	alt_5623_new	14	12	18	8	15	10	18	9	23	7
TTCCCATTGTCCAGTC	alt_5623_new	14	14	9	5	20	11	9	7	16	5
TGCGTTGGTCTAGAAC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CCTACCCTGTGTGATG	alt_5623_new	7	23	6	8	21	8	32	9	23	6
CAGTGGGGATTGCCTG	alt_5623_new	6	21	12	13	24	16	20	13	14	10
TGTCTCATGGCTCCAT	alt_5623_new	1	3	0	1	1	0	0	1	0	0
AAGTCAGTCAGTCCGC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
ACCGCTGGTACTTTAT	alt_5623_new	0	0	0	0	0	0	0	0	0	0
AGACGTATCTATAAGC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
CCAACCATCCCCGGGC	alt_5623_new	5	27	4	7	22	7	30	5	32	6
CAAACTGGGAATCTTA	alt_5623_new	29	20	11	8	22	10	20	11	24	16
GTCTTCATCTTATGGG	alt_5623_new	6	12	5	5	11	5	9	3	12	6
AATCAACGATGTGGGC	alt_5623_new	22	48	23	38	46	24	66	29	62	30
TAACCCGCCCACCTGC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
ATCACTAAGTACTGGT	alt_5623_new	18	26	21	16	33	19	33	15	31	15
AGTCTTATCACTCTAC	alt_5623_new	0	0	0	0	0	0	0	0	0	0
ACCCTTTTTGACAGGG	alt_5623_new	2	1	4	3	1	3	2	3	3	1
TGCAGCGGGCCAAGTC	alt_5623_new	5	12	13	5	11	5	8	9	9	5
ACTGCGGTAGGAGGGT	alt_5623_new	14	14	10	2	13	9	15	4	24	3
GCTGATCTGTACGGTG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
GTTTTGATGACCAACT	alt_1592_missing	94	121	87	64	120	75	123	74	104	66
ACATCAGGAGTCATGC	alt_1592_missing	4	9	16	13	11	3	6	11	11	3
ACGGACGACATGTTTT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TACGCAACAAGTATTT	alt_1592_missing	9	15	18	14	15	7	16	13	10	9
TGCGAATCTCCTTCCG	alt_1592_missing	7	14	6	13	11	5	6	2	7	5
TCAGTGGAAAGATCTG	alt_1592_missing	11	7	7	9	6	3	6	3	5	3
TCTGGGCCTGGCCTTT	alt_1592_missing	137	232	180	159	176	133	246	128	252	140
CCCATCCAATGAGTCG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CGATGTCGGCTTGACG	alt_1592_missing	62	58	73	50	71	57	78	49	73	26
TATAATGTCCCCCACC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TCTCACGGAATTGGAC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTCAGATCCGACCCCC	alt_1592_missing	22	23	26	25	29	34	28	23	35	21
GAGTTTGGTTTCCGGG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
ATGGGCTAGGCTATGA	alt_1592_missing	55	58	55	38	68	41	61	32	74	38
TTTGATAACAGCTTTA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TGTCACACTTAGCTCG	alt_1592_missing	2	5	6	10	14	8	11	13	16	15
CAGCCAGTCTTAATCA	alt_1592_missing	30	71	22	28	78	24	86	22	71	34
CCTAGTTTCTAGCGAG	alt_1592_missing	9	36	25	16	39	12	47	18	53	17
AGTCTGAATGTGCGGG	alt_1592_missing	12	19	16	6	24	13	15	13	28	6
CTTATTTTTTTAGTGC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
GTGTGTCGCTTATCTT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTATCTTATGTTCAAT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
ACTAGAGGTGCCTGGA	alt_1592_missing	73	160	109	91	136	76	153	87	162	81
TTTGCTTCGGTGAATC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
AGTCAAGCTGCGCCAA	alt_1592_missing	13	43	31	21	44	20	46	20	35	10
GTCAACCGTTGGTATA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTTCTTATTTGG	alt_1592_missing	68	70	82	65	84	62	102	67	80	53
CGTCTCCCTTGAGATC	alt_1592_missing	66	104	68	68	100	61	113	49	122	48
CGGTTTCGCTGCTTAT	alt_1592_missing	1	0	0	1	1	0	0	0	0	0
ACTCTCCTGCCTGGAT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTGCGCTTGGGTGCTC	alt_1592_missing	18	28	27	32	39	15	33	20	33	16
ATGTAACATGGATATG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
GCAGCGCATGGAATTC	alt_1592_missing	5	12	6	7	13	5	14	5	17	3
AGGTAAATGTCTCATA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTACGTGTGTGG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CCGTGGCCACATTTAT	alt_1592_missing	46	87	68	41	78	45	107	55	95	37
TCCCACACAAACTTTC	alt_1592_missing	11	21	6	4	24	1	19	8	28	7
ATTTCTGGCGTATCAC	alt_1592_missing	173	223	146	154	243	141	254	147	257	145
TTCGTCCCATTTAGAT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TGGTCCCTTGCATAAA	alt_1592_missing	2	13	7	5	7	12	17	9	13	9
TAGCGAAGTCGAGATA	alt_1592_missing	68	69	59	57	62	45	44	57	63	48
CCCATCTTCGTGATGA	alt_1592_missing	35	40	35	26	29	21	32	19	32	18
GAGCGGGCCCTTGCCT	alt_1592_missing	2	8	5	3	5	2	2	6	3	2
GTTCGACCGCCGGCTC	alt_1592_missing	4	6	6	2	4	4	6	2	2	6
CGGTTTCTTTATATTG	alt_1592_missing	9	9	11	6	10	3	12	7	12	5
CCATTACTTAGTAGCG	alt_1592_missing	44	74	51	44	64	53	97	49	77	49
CCCTTCTCGCCGGCCG	alt_1592_missing	29	53	53	38	45	26	32	26	65	44
AATATAGTTTTAACAG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CCTTACGTTTCCTTCT	alt_1592_missing	25	44	36	39	40	41	40	24	38	17
CCGTTTCTTCCTTTCG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
GCGTTAATTATCTTGG	alt_1592_missing	1	11	13	7	13	8	14	5	12	7
GTGGCGCCGCTTTCCT	alt_1592_missing	5	17	10	15	15	9	27	8	19	12
GATAGCAAGTGAGGCA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CCCTTCGTGGTCTGTA	alt_1592_missing	8	31	11	12	35	12	19	23	27	16
GTTTAGGCCTTAGGAT	alt_1592_missing	2	0	1	2	0	1	2	0	1	1
TCTCCCGTAAGGCGTT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CCCTTACTGATGTCCA	alt_1592_missing	103	212	119	103	249	94	285	100	271	91
AGCATCACGGCTGTTG	alt_1592_missing	187	278	221	197	262	166	237	180	259	147
CTTTCGGGGTAGGCGG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TAGGGTAAACTTTGCT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CCAGTGTCGCGCAGAG	alt_1592_missing	44	86	63	62	74	35	90	43	89	43
CAAGGTGTGTCGAATC	alt_1592_missing	17	35	29	23	25	20	45	24	33	26
TGAAACATTGGCCAGC	alt_1592_missing	15	24	27	11	19	16	20	7	32	19
CACGGCGTCATCTTGT	alt_1592_missing	13	106	31	17	107	17	121	15	120	20
TAGATATATAAAGTAT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CCTCTTTCGAGCTGGT	alt_1592_missing	7	14	15	12	12	10	13	11	20	14
ACCTCTTCCATTTACC	alt_1592_missing	3	8	4	5	6	9	6	3	10	4
TCTTAAGTTTTCTGAC	alt_1592_missing	3	2	12	4	12	7	4	9	8	5
ACATGTGATCTTTCAT	alt_1592_missing	26	68	26	26	52	28	65	29	58	33
ATCTTTGACTTAGTTT	alt_1592_missing	8	9	7	2	6	7	7	5	10	4
TCAACGAGATGAGTCC	alt_1592_missing	1	0	1	0	2	1	1	0	2	0
GCTGTTACCTGTCCAT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
ACGCACAATTCTGACA	alt_1592_missing	17	42	26	24	46	25	32	22	41	27
ATGATGATTCCCTAGC	alt_1592_missing	56	109	67	62	99	59	91	39	119	60
AGGCACGTACGACGGC	alt_1592_missing	21	22	30	15	20	17	32	11	32	9
AATTCTGGCGTATCAC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TGAAACCGAGTACACC	alt_1592_missing	34	71	35	34	73	36	60	30	62	43
ATGACTTATCATCCTT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
ATGCCCAACCTATTGC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TGGCGTTTTAAACCTG	alt_1592_missing	19	22	16	13	34	14	22	10	22	10
TTATTTGAGTTAATCG	alt_1592_missing	6	19	11	7	19	9	21	8	14	7
GCAATGACAAGCTTAA	alt_1592_missing	24	48	51	37	52	28	58	28	36	28
CATGCTAGCCACAAAA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGTTAAAGCTTA	alt_1592_missing	13	15	6	10	13	4	9	7	9	11
GAAGGCAACTCCTTTT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTGGGTATGCTCGCCA	alt_1592_missing	3	12	4	11	21	7	19	4	15	7
ACGGCTCTCGTTGCCC	alt_1592_missing	45	74	65	42	68	43	63	41	70	43
AAGTCCTAGCAAAGTC	alt_1592_missing	6	2	6	1	5	5	1	7	8	9
TTAGTGTCCACATTCC	alt_1592_missing	10	17	18	6	12	14	16	10	12	8
CTACATCGCTTTTGCC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CGGCAGCCCGCACTCG	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
AATGAGGATTTAAGTC	alt_1592_missing	7	7	8	5	14	4	4	2	11	10
GCCTGGCTTTTTGGTA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CATCCTCGACTAGGTT	alt_1592_missing	15	26	11	16	39	20	30	24	36	16
GTACAACCGATAGGTA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTTAATTGGCTTCGTA	alt_1592_missing	1	1	2	0	2	5	0	1	1	0
TGTGAAGAACCGTCGC	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
CCAGCCCGTTCTATAT	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TACAGCGCTCTCGTGA	alt_1592_missing	0	0	0	0	0	0	0	0	0	0
TTCATCTTTGGATTCT	ref_6041_new	33	58	47	44	47	53	57	34	69	40
CATCGCATTTTTACGT	ref_6041_new	7	11	15	7	8	11	13	9	23	9
ATGCCTTATGCTACCG	ref_6041_new	38	60	64	54	76	53	75	32	62	51
AGATCCTGTCACCTGC	ref_6041_new	34	45	61	53	46	31	52	32	53	37
CTGTACCCGCTTGCTT	ref_6041_new	0	0	0	0	0	0	0	0	0	0
CGTAATCGCTGGTATC	ref_6041_new	7	12	11	5	13	8	11	11	8	9
TCTATGTGGTCTATCC	ref_6041_new	15	34	18	10	36	20	31	12	51	14
TCCCCCTAGTTGTTGA	ref_6041_new	56	65	71	60	96	65	88	69	98	61
CTAAGTACCTATGTGG	ref_6041_new	15	9	16	10	12	13	15	12	22	8
GTACTTCCCGATTTCC	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TCTTTGAAATGAGCTG	ref_6041_new	18	19	16	19	15	9	14	14	21	10
TTCCGCTCGTTACAAG	ref_6041_new	0	0	0	0	0	0	0	0	0	0
CATTCGGCAACGTGCT	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TAACGGTCGTCAAGCA	ref_6041_new	34	72	26	42	58	34	42	31	56	32
GTAGCTTTCGTTTGCA	ref_6041_new	34	37	39	33	44	27	52	35	45	30
CCCGATGCTATATGCC	ref_6041_new	4	6	3	7	22	6	19	4	11	7
AATAAGTAAGTTAATG	ref_6041_new	0	0	0	0	0	0	0	0	0	0
CTTCCCATTAGGGGTC	ref_6041_new	51	122	77	71	99	54	141	71	111	67
TTATTTTGGTCGCTCA	ref_6041_new	0	0	0	0	0	0	0	0	0	0
ATGTATACGTACTCCT	ref_6041_new	38	51	33	34	64	39	61	32	48	24
CCCAGATGGGGTAAGG	ref_6041_new	7	22	17	13	13	9	17	13	21	13
AGTAGTGAGTGAGTTC	ref_6041_new	8	16	17	15	36	17	21	15	17	17
CCCATTCACTCCGACG	ref_6041_new	10	42	17	19	40	16	54	17	44	20
TCCTTGGAACGACTGG	ref_6041_new	11	8	9	12	12	8	13	4	11	4
GCCCACTCTACACCTA	ref_6041_new	8	6	4	5	6	12	8	5	11	16
CTTACGAATTAGTGCA	ref_6041_new	4	7	3	3	12	4	7	6	8	7
ACGTACCGAGGTGTAC	ref_6041_new	25	28	29	28	42	29	33	20	40	27
TACTTTTAGTTCCACC	ref_6041_new	12	11	18	14	22	13	28	12	24	8
TGTATATACTAAAGAA	ref_6041_new	3	5	2	5	4	0	5	2	2	1
TATATACGTGATTCAG	ref_6041_new	53	78	60	64	74	56	103	37	79	35
TGCAATCACGGAATTG	ref_6041_new	9	13	18	15	19	9	21	8	17	9
AGTTTCTATTGTCTAC	ref_6041_new	26	22	29	19	30	36	38	17	34	20
ATTTCAGGATGGTATT	ref_6041_new	1	2	1	3	4	4	0	0	1	0
TTGGTAATCGTTTGTT	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TCTCGTCGTATAATTC	ref_6041_new	4	0	0	2	1	0	2	1	3	0
TTTTATGTGGACGCAA	ref_6041_new	17	13	11	16	10	4	14	17	14	15
TACATCAGATTCGCCG	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TTCAGCGTTGGAAAAC	ref_6041_new	17	20	13	15	15	11	16	15	27	14
ACCGCCAACTTGGGGC	ref_6041_new	50	104	90	74	93	67	129	70	121	62
GCTATCTGGTGAGACA	ref_6041_new	3	3	3	3	2	1	2	0	8	4
CGGGTTTACTTATATG	ref_6041_new	10	5	8	5	9	4	3	1	3	2
AGTTTGACTGCGCACG	ref_6041_new	2	4	3	3	7	7	10	8	6	3
TTAGTTAAAGAATTGA	ref_6041_new	12	15	14	8	12	9	11	8	15	6
TTGGTAAGTCTGATAG	ref_6041_new	7	7	4	3	7	4	7	3	8	2
TACTGTCGTGGCAGCC	ref_6041_new	37	59	56	41	49	38	65	28	67	37
TTCATGATGTAGTCTT	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TGCCTCTTAAGCTTTA	ref_6041_new	7	7	5	4	6	4	7	6	14	7
ACCTATGTGCCCACCG	ref_6041_new	8	24	18	14	18	17	23	9	28	15
TCGCTTACTGAGGTCT	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TTCCGAGGATACAATG	ref_6041_new	31	32	30	35	46	28	35	24	30	30
CAATTCATTTGTTGAG	ref_6041_new	109	105	113	96	113	97	130	102	112	79
TGAGCCCTTAAACGAC	ref_6041_new	0	0	0	0	0	0	0	0	0	0
GGTTCTTTGTGTGTGG	ref_6041_new	4	2	1	1	4	1	1	2	2	3
TCCCTATTAAGCTTCA	ref_6041_new	59	74	57	49	47	54	71	45	53	34
CCGCGCTTGCTCGTAA	ref_6041_new	115	301	131	118	312	97	344	101	330	104
GACGGACATACATCAC	ref_6041_new	89	89	74	84	123	82	142	100	143	77
GCACGTCCAGTTGTTA	ref_6041_new	6	9	10	6	9	1	9	4	11	6
TAGGGGGTATAAGTTA	ref_6041_new	42	58	39	47	56	36	61	36	72	39
TGGCTCCTTACCTACG	ref_6041_new	242	479	275	282	525	221	567	250	551	225
CATGTCAGTATTAAAG	ref_6041_new	0	0	0	0	0	0	0	0	0	0
AACCACACACGTCATT	ref_6041_new	16	24	12	17	20	9	22	12	14	13
TTCTCAACGATCAATG	ref_6041_new	0	0	0	0	0	0	0	0	0	0
AATCAGCAATATTTGT	ref_6041_new	0	0	0	0	0	1	0	0	0	0
GTCTTCAGATTGAATA	ref_6041_new	16	4	8	13	11	9	14	12	10	10
TTCAGTAAATTTATTA	ref_6041_new	36	33	34	31	36	22	48	23	35	18
TTTTCCCGACCGGACA	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TCGCCACCTGGCATGA	ref_6041_new	29	39	31	30	48	24	49	34	55	30
ATTTACGAGGGCGCAG	ref_6041_new	59	56	61	49	65	50	58	55	74	38
TTGTTTCCGTATTTCA	ref_6041_new	19	19	17	12	29	18	21	17	39	25
CCGATGCACGTGCTTG	ref_6041_new	10	24	23	18	26	14	28	12	29	9
TCTTCTAACAAGTTCA	ref_6041_new	0	0	0	0	0	0	0	0	0	0
GTTCTGCGGGTAAGTA	ref_6041_new	32	28	43	29	31	27	20	24	35	25
CGTATCCGAGCAACCT	ref_6041_new	30	52	32	43	51	37	48	31	60	33
AATCAGCTATATTCGT	ref_6041_new	0	1	0	0	0	0	1	0	0	0
AGCTGCGTGGGTTTAT	ref_6041_new	15	16	20	3	22	9	26	8	15	12
GCCGGACGTGGGAAGC	ref_6041_new	14	14	17	12	19	24	9	14	15	15
CTCTGTCGCTCGCTCC	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TTGCCCTACCTGTGTC	ref_6041_new	0	0	0	0	0	0	0	0	0	0
TTCCCAACTAGCAAGA	ref_6041_new	0	4	1	4	5	2	6	1	5	1
GGGTCTTCTCCGCGTC	ref_6041_new	49	76	62	61	79	56	70	37	82	42
ACAGCGGCCTCCTATT	ref_6041_new	22	52	16	14	36	17	31	17	44	21
TATGTTAGGTTCAGTA	ref_6041_new	2	4	9	5	9	8	14	6	9	5
TTAATGATGCCCTTTA	ref_6041_new	16	21	16	8	22	21	35	14	24	18
GGCCTTCCGTTCCCCT	ref_6041_new	51	55	55	44	53	38	43	35	50	36
AGTTATTACCACGCCC	ref_6041_new	31	36	32	18	35	19	45	17	46	20
TTAATTTATTCTCTCG	ref_6041_new	28	33	29	21	32	20	30	25	34	17
TAGTTCTATTTGTAGG	ref_6041_new	6	5	3	5	7	7	9	2	8	1
AATCAGCAATATTCGT	ref_6041_new	376	366	415	335	410	272	378	308	444	316
TTAGCATCTACCATTC	ref_6041_new	8	27	18	11	26	9	19	8	32	10
TAAGCTTGGATACATT	ref_1587_reverse	18	12	19	31	12	17	21	19	13	10
CTTGCTAGCATCTCCT	ref_1587_reverse	26	27	27	31	33	25	30	31	30	25
CCGTTCGAACTTGTCT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GGTGCTTCCCTGGCGT	ref_1587_reverse	34	33	47	29	44	42	31	39	35	31
CAAGACGCCGCTTTTC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GAAGAGAGGGCGTATT	ref_1587_reverse	78	89	115	81	75	92	102	80	93	70
GCTTCATTCAACCGTT	ref_1587_reverse	44	28	48	34	20	36	28	33	39	35
TAGCGCTAATGGCAAC	ref_1587_reverse	88	89	128	129	105	99	77	90	110	99
ATATATTTTGTATCGT	ref_1587_reverse	24	23	29	22	18	33	20	25	15	21
TATGGGAACGTCGGGT	ref_1587_reverse	16	11	24	18	9	12	6	18	11	18
TTGCTCCCTTGCAATG	ref_1587_reverse	67	52	63	63	54	61	53	65	63	45
CCCGACGTTAGAGTAT	ref_1587_reverse	27	31	33	28	33	27	35	27	32	23
ATTTGGCGTAAACGAT	ref_1587_reverse	6	12	15	8	9	6	14	9	15	8
TTCGGGGCTAGGGAAC	ref_1587_reverse	12	17	17	21	16	10	9	12	9	15
GTGCACTCAACTGAGT	ref_1587_reverse	33	44	40	39	31	38	29	35	33	29
GCTAGTGCGCTCTCGG	ref_1587_reverse	5	7	4	4	4	4	3	5	1	1
CCATATATTGAGGTAT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GTAACGCACCCTCTAG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTCCGCGTGGATA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
AGATGATGCGTCGTTG	ref_1587_reverse	62	58	72	65	49	51	56	68	63	56
TTATGTGAGACTTTTT	ref_1587_reverse	62	47	67	65	44	70	44	41	53	60
CGCGCCCAACCGTAGA	ref_1587_reverse	1	5	4	2	2	4	2	8	0	3
GGAACACTATGTACTA	ref_1587_reverse	12	14	20	19	6	12	7	10	15	8
ATCTCGACACAGTATT	ref_1587_reverse	17	17	16	13	18	20	16	17	16	15
GGTCGAGGGCATGCAA	alt_1587_reverse	64	47	68	73	45	52	59	71	53	50
TAATTGGGCTCACTAA	ref_1587_reverse	27	30	35	16	18	21	19	28	15	26
CAGCAAGTTGTGGTTC	ref_1587_reverse	0	0	1	1	0	2	0	2	0	1
GCATCACACATCCTAC	ref_1587_reverse	8	1	7	4	5	6	4	3	7	11
TTACATCGATAACCTG	ref_1587_reverse	25	22	31	22	26	21	11	22	10	18
GGCTAGAACTCTTGAG	ref_1587_reverse	4	7	9	12	5	11	9	6	7	9
CTCCCAGCTGGCTCAT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTTGACATACCGTTAT	ref_1587_reverse	240	221	313	277	234	273	260	220	239	212
TAGCTTTACGATTCTA	ref_1587_reverse	18	19	16	11	7	13	19	12	12	11
ACCCGGTTACTCAGTC	ref_1587_reverse	7	6	5	3	6	6	7	4	2	7
GAGCATCGGCTATATT	ref_1587_reverse	28	36	34	26	42	44	29	28	30	32
TCCGCACCGTTCCCAT	ref_1587_reverse	1	4	4	4	2	7	2	6	6	7
GGTTTAGTTTTGATAA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTACATGATTAAACAG	ref_1587_reverse	47	42	53	51	36	29	56	34	48	42
TCCACTTAACAATAGG	ref_1587_reverse	1	2	0	1	1	0	0	0	0	2
AGCACCTATCATCGTT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CATATTGAAGCGTCAC	ref_1587_reverse	157	133	169	138	156	155	142	131	161	127
TTGGACCCCGCAGTGA	ref_1587_reverse	49	50	57	57	44	43	55	38	38	32
TGCGGTAGCTAGTTGA	ref_1587_reverse	96	84	98	108	60	87	77	74	83	71
AGGGAGTGAGTCCGTT	ref_1587_reverse	54	52	76	74	52	52	48	43	77	51
TGTTGCCTTGCCCTTC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTGCAGTGGTTTCAAC	ref_1587_reverse	95	82	107	96	86	82	89	85	91	99
AATTACCCTCTGGTAG	ref_1587_reverse	6	6	6	7	3	6	7	2	4	7
AAAAGGGTGTTGCTAA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTTCGTCTGTTAG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGTGCGTCAACGG	alt_1587_reverse	81	66	121	88	69	85	73	80	63	90
CGTGAAAGCATCAGTA	ref_1587_reverse	65	52	78	83	56	65	86	77	73	66
CTAATTCAGTTCGGGG	ref_1587_reverse	13	9	8	6	6	6	9	9	6	10
GGTGCGGCCATTCGCA	ref_1587_reverse	63	54	73	52	55	49	52	57	51	58
ACGTCGCATATGTATG	ref_1587_reverse	38	25	32	38	26	21	37	39	35	24
TTAGGCCGTGGTCGGA	alt_1587_reverse	63	72	83	73	42	68	65	65	63	59
TTCAGTTAGTGTCGTA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TGGCATCGCTATAATC	ref_1587_reverse	127	95	144	141	89	117	94	111	107	107
AAAATCCGGGGTGGTC	ref_1587_reverse	17	18	31	35	20	30	19	31	19	32
TTCCGTTTATCATTCT	ref_1587_reverse	170	129	190	149	122	159	138	158	136	142
CCGTGACGTGTACTTG	ref_1587_reverse	11	10	26	16	17	26	17	23	14	15
GGGCTTTGTTCGCTAT	ref_1587_reverse	63	62	70	51	53	40	37	49	48	47
CATGTCGTGTTCGAAT	ref_1587_reverse	28	10	27	22	18	24	21	28	12	23
GGCTCGCTCGTATGGA	ref_1587_reverse	9	5	8	9	9	7	5	10	7	4
GGGGTTAGGCGTTCGG	ref_1587_reverse	3	2	4	4	9	7	6	3	5	5
CTAAATCGCGTACCGC	ref_1587_reverse	19	15	14	10	22	18	33	28	15	22
CTATGACTCTGCTATT	alt_1587_reverse	61	61	79	76	54	67	62	74	75	60
ATGGCCAGGAATGCGC	ref_1587_reverse	99	108	141	107	108	85	101	102	102	98
GCGGGCCTCTTTGGCA	ref_1587_reverse	37	25	37	34	31	31	28	41	31	34
TCCACATTTTATCTCT	ref_1587_reverse	2	0	0	0	2	1	0	1	0	2
CAGTCCACTGCCGCCA	ref_1587_reverse	0	10	1	1	7	2	7	1	9	1
GCGTTACGCACCGTTT	ref_1587_reverse	35	31	36	36	43	32	25	34	24	32
AGATGATGTTGAACTT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCTCTTTCGAAAC	ref_1587_reverse	22	16	23	30	35	29	27	26	27	21
ACTGTGGGCTATACTA	ref_1587_reverse	32	29	33	30	28	24	42	19	31	28
GTGTCTGGAGGGAGTA	alt_1587_reverse	143	136	184	141	121	139	156	146	118	128
ATTGTCTTTCCTGACT	ref_1587_reverse	19	11	13	12	11	17	16	19	8	18
CTGTAGAACACCGTTC	ref_1587_reverse	21	26	27	25	13	27	26	22	22	12
GTTATTCCGTTCGATT	ref_1587_reverse	5	6	4	8	4	1	1	6	1	1
GCTTGCTCTGAAGCTC	ref_1587_reverse	79	61	62	65	49	48	71	56	57	57
AGTTATCTGTTTCCCG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
AAGGCCGATCTGATTC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTCACAATGAATGAGG	ref_1587_reverse	36	28	37	32	24	35	28	28	26	25
CCCATTATGCGGGGGT	ref_1587_reverse	31	25	52	43	26	30	37	27	24	28
TTTGACTTTCTTTTCA	ref_1587_reverse	3	1	3	1	1	0	0	2	1	1
GGGTCCGAAACTGTTT	ref_1587_reverse	41	41	50	43	23	37	33	37	36	41
CCGAAGTGCAACTTTT	ref_1587_reverse	15	7	16	9	23	13	14	8	12	11
AAGTATCGGTCGTGCG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTCCCTCTTAGA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCATTATGAGCCGGCG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCTGGGTATTCCT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCGCTTGAGACCC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTGGGCAGTGCGG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CCTAATATGCGCTCGC	ref_1587_reverse	6	3	7	8	9	4	7	4	3	4
GTCTTTGCCTCTCTAG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCAGCTAACTTCT	ref_1587_reverse	45	35	50	38	48	53	41	46	38	34
GCCGTTTACTCTGTCC	ref_1587_reverse	54	60	67	61	75	43	68	61	87	57
CATTGTTAATGATTCC	alt_1587_reverse	38	55	53	64	51	53	57	48	46	46
TGCGGACTGGGTCGTC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTATAAAGTCAGGGGC	ref_1587_reverse	134	123	151	153	107	118	142	109	126	96
GCTATATCCCTTGAGA	alt_1587_reverse	47	37	52	52	35	41	38	42	35	48
ACTTGCTAACTGGCCT	ref_1587_reverse	61	52	79	52	41	65	25	54	51	45
GAGGACGCACCGTAAC	ref_1587_reverse	40	28	38	41	42	36	16	32	34	50
GGAGTGTTGGTAACCG	ref_1587_reverse	6	6	11	8	1	5	2	1	4	5
TCTAATCCGCGTTGTT	ref_1587_reverse	52	58	61	58	42	57	72	44	59	50
GGCAGTTACCCTCTGT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGGCCAGATATGG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTTCAATTTTTCA	ref_1587_reverse	6	7	6	8	3	3	5	7	2	6
TCGCTTGGCTCGTTTT	ref_1587_reverse	49	43	65	63	36	63	55	47	34	57
CGTTTGGCCGATGCTA	ref_1587_reverse	27	23	35	18	18	34	23	32	45	27
AACCCTTAGATTTCAT	ref_1587_reverse	69	57	88	83	54	79	54	56	53	62
CCTAGTAGCTCTAGAA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
ATATGCGCTCAATCGG	ref_1587_reverse	6	6	5	7	2	6	0	3	2	3
CTCTCGACAGCACGAC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTACCCGGTGTGG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GTGTAGGGGTCATTAT	ref_1587_reverse	1	0	3	1	2	3	0	2	0	0
GCGTTTTTTTAAAGCG	ref_1587_reverse	7	9	6	9	10	10	13	10	12	7
GATTATAGTGATTTCC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGACTTCGTACCC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TATATTTTTGGCTCGT	ref_1587_reverse	4	5	8	7	3	6	2	7	6	2
AGGACTCGCTTTTTGC	ref_1587_reverse	7	7	16	11	4	6	7	9	10	6
TTTTAGTTCACACGCA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
ACCATTCGTTGTATAT	ref_1587_reverse	90	107	106	86	99	93	127	102	114	75
AGGCCGGTGTATCACT	ref_1587_reverse	17	15	31	18	15	22	8	18	13	11
TGTTATAGAGGTAAGG	ref_1587_reverse	42	34	36	35	44	32	46	36	33	29
CTTGTTATGGTTGCTC	ref_1587_reverse	11	8	14	20	10	19	8	19	14	17
CCAGAACATTTTCGAG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GGGCATTGACTCCTAC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCTCTATGAGAAC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAATCGTTTAGGA	ref_1587_reverse	16	16	18	8	8	13	17	10	18	12
CGCAGTGTTGTCGAGA	ref_1587_reverse	134	107	140	124	113	118	106	114	122	114
ATGATCGTACCACAAG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
AGTCACAATGGGTACT	ref_1587_reverse	87	81	96	75	72	60	77	79	81	92
CATTGCATGCAGAGGG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTATTCTAGGTGC	ref_1587_reverse	87	56	109	67	72	67	71	49	88	51
AAGACTTGGCTTTTGG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
ACATTTAACGCAGCCG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTCCCGACAGTGT	ref_1587_reverse	1	6	6	3	4	4	7	0	4	4
ACGTGCAATACTCAGA	ref_1587_reverse	33	34	36	30	33	23	35	37	26	30
GGCGCGTAATGAACAT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTCCCCTTCGATG	ref_1587_reverse	20	14	31	21	22	24	21	14	15	17
ATATTGTGTTTATTTC	ref_1587_reverse	63	54	73	61	52	55	65	48	39	54
ATTGCCCACTCGAACG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCACGCGCGTCTGGCG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
AGCGGCAGGTTACGTT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
AACTCTCCAGGTTCAA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTGGGGGCTGTG	ref_1587_reverse	16	32	27	26	22	15	38	22	29	17
CGCACGCTGCTTTCGA	ref_1587_reverse	8	2	4	7	4	4	3	8	0	9
GCCAACATTTGGAGAT	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
ACAGTGTCATTGGTAA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGCGCCCCATATC	ref_1587_reverse	34	33	44	36	35	41	26	33	30	33
CATCTAAATGTCCCCT	ref_1587_reverse	19	18	27	17	24	21	27	19	21	20
AATAACTTTGTTTCAT	ref_1587_reverse	5	1	7	3	2	2	1	3	3	3
TTCTGGTATAATTTTA	ref_1587_reverse	42	28	43	45	25	26	19	46	30	31
GCTTGGAGTATGTAGT	ref_1587_reverse	5	10	3	13	8	6	8	8	5	4
CGCGTCACACACGGTA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
ATGACTTGGCTTTTGG	ref_1587_reverse	148	98	177	162	114	148	117	128	122	150
TCGAACCACTTTTAGA	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTTCATGGAATTGGTC	ref_1587_reverse	60	49	67	59	51	64	59	38	60	45
GGAGACGCCTTACGGC	ref_1587_reverse	50	32	41	33	31	43	38	38	32	43
TTTTTATAAGAGGATG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
GAATGTGTTCGGCTTC	ref_1587_reverse	1	0	0	1	0	1	1	0	1	0
ACAAGGAGGAGATTCG	alt_1587_reverse	135	115	198	164	126	172	141	145	151	183
GTGTCTTCAGTGCTCC	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCGACTTGGCCT	ref_1587_reverse	0	1	4	1	0	0	4	1	4	1
CTTGAGGTTTAAGTCG	ref_1587_reverse	0	0	0	0	0	0	0	0	0	0
AATCTTTTAACACGAG	ref_1587_reverse	23	18	27	25	20	22	27	22	25	19
TTCGCCCTTAGTTGGT	ref_1587_reverse	7	10	10	8	12	11	8	10	14	9
CCCGCCGACATGGCGG	ref_1587_reverse	29	31	37	43	36	27	36	37	39	41
GGGTACAGTCCCACTC	alt_5757_new	10	14	9	7	20	8	9	6	7	3
CGGTTTTTCTACGTCT	alt_5757_new	4	8	4	3	8	5	12	4	9	2
CTATAGGTCGTTTCTG	alt_5757_new	86	221	128	110	246	91	204	110	261	106
CTCCTTTGCTCATCCA	alt_5757_new	5	17	6	7	19	3	23	3	29	0
GCTTTCAGCACAGCGG	alt_5757_new	0	1	0	0	0	0	0	0	1	1
TCTGTTTTTAGTACTT	alt_5757_new	31	35	26	24	43	23	45	23	58	29
ATCACCTAGGAGTTCG	alt_5757_new	26	35	24	24	28	31	45	29	43	23
TATTTCGCGTCGTGTA	alt_5757_new	2	9	5	3	5	0	6	5	9	2
GCAAAATCGCATTACA	alt_5757_new	18	31	21	19	33	18	35	16	39	27
TATGTGATTCTGTTCA	alt_5757_new	31	50	41	33	34	25	49	22	47	19
GCCAAACTTTCTATGG	alt_5757_new	20	25	28	28	40	21	31	25	35	21
ATGGTGATCTTTCGCG	alt_5757_new	3	7	5	5	5	4	4	4	5	3
TTGTAATCCCTCTAGT	alt_5757_new	9	18	8	4	7	6	11	1	12	6
GCGCAAATCAAGATCT	alt_5757_new	0	0	0	0	0	0	0	0	0	0
GTGGCACGGCGGTCGA	alt_5757_new	1	10	3	1	8	1	3	0	11	4
GCCTGCCCGGTAATAA	alt_5757_new	0	0	0	0	0	0	0	0	0	0
TAATGACAATGGATTA	alt_5757_new	26	52	23	33	47	31	49	23	64	19
ATTTTTCTCCTTTTGC	alt_5757_new	72	68	70	42	82	56	91	49	69	54
GTTGATAGCATTCTTG	alt_5757_new	4	7	5	4	6	1	4	8	7	3
TTCGTTGTGCCCCATC	alt_5757_new	30	54	41	41	73	29	61	29	60	27
TGGAACTTGAGACCGC	alt_5757_new	27	30	25	15	24	23	33	17	29	21
CAGTTGCCCTACCGGA	alt_5757_new	16	46	18	26	39	16	30	13	40	23
ATCTGTTGCCGAAGAA	alt_5757_new	2	5	1	1	3	0	4	3	7	1
GATACACTCTGCAATC	alt_5757_new	0	0	0	0	0	0	0	0	0	0
ATCTAATGACTTTAGG	alt_5757_new	10	21	15	8	22	3	25	21	20	10
TAGACTCGCGGACCTC	alt_5757_new	0	0	0	0	0	0	0	0	0	0
AGTAGGCTCGTTGCGC	alt_5757_new	2	7	4	2	16	5	6	2	5	3
CCCTTCTAATGCCTCA	alt_5757_new	10	26	18	24	25	16	30	16	26	15
CACGCCCATGGGTTCG	alt_5757_new	22	17	8	9	13	8	16	13	20	9
ACCGTAAGCGAGGGAT	alt_5757_new	392	654	463	437	727	385	700	400	703	357
ACCTTAATATCATCGC	alt_5757_new	10	34	18	19	36	18	39	11	29	19
CTGGATAATGGTTGGA	alt_5757_new	5	8	7	6	7	2	9	5	8	8
ACGTGTCACCTGGTAT	alt_5757_new	7	11	17	1	7	9	20	3	16	11
CCTTTATCCGTATGAG	alt_5757_new	19	52	33	26	45	25	57	22	56	29
CTCTCACTAGGTAGGA	alt_5757_new	19	34	28	17	40	19	40	19	39	17
TTCGTCACCCTGACTT	alt_5757_new	6	4	1	4	8	5	5	6	7	7
GGATGGTTTGAGAACG	alt_5757_new	10	17	11	6	12	4	16	5	24	2
GTACGCCCCACAACCC	alt_5757_new	33	41	30	29	41	26	36	28	41	22
ACCAGGTAAGTTAACT	alt_5757_new	3	14	15	6	20	10	15	10	12	6
GTCCATTCGTGAGTTC	alt_5757_new	40	68	19	28	56	27	59	20	57	27
TTGTGTGGTACGTCGT	alt_5757_new	0	0	0	0	0	0	0	0	0	0
TTGTTCCCGCCGTGCC	alt_5757_new	5	16	11	4	8	5	8	4	2	7
CCGTCCTAGTCTATAC	alt_5757_new	43	75	49	36	65	43	68	31	79	39
GGAACGCTACCCCACA	alt_5757_new	6	18	11	5	17	5	14	11	12	8
TTTGCTATTTCTTGCA	alt_5757_new	108	194	135	96	208	110	197	111	204	83
CAGAGGAGGCTGGGTC	alt_5757_new	30	56	38	35	68	37	81	43	83	38
ATGAAGGGCTCAACTT	alt_5757_new	39	56	38	42	67	46	60	27	69	34
TAACGTTGGCGCGCCC	alt_5757_new	9	9	6	3	19	2	6	3	4	5
CTGCTATCTCCCGCCT	alt_5757_new	0	0	0	1	0	0	0	0	0	0
GTCCGGTGAGCTTTTA	alt_5757_new	15	30	32	31	44	24	36	37	55	17
TGGGCGCATGCACCTT	alt_5757_new	25	63	37	40	58	37	80	41	63	31
GTATATTTAGCCGTTC	alt_5757_new	15	35	22	22	44	27	43	31	37	20
CACTTCACATCAATGT	alt_5757_new	16	61	34	24	74	28	54	21	70	23
ACCGGCAAATTCGTTT	alt_5757_new	0	0	0	0	0	0	0	0	0	0
GTTACGCCTCCGAACT	alt_5757_new	7	6	4	3	3	5	6	12	5	4
TGGAGTCAGTCAAGTT	alt_5757_new	12	15	14	9	13	11	22	9	20	8
TTTCGGCCGCGGCCGG	alt_5757_new	8	6	1	5	7	2	2	4	5	11
TTCTTCCCCGGGTTCT	alt_5757_new	21	44	20	21	52	15	58	12	66	17
GACTCAAGTTGCGTCT	alt_5757_new	35	52	50	41	61	32	61	30	68	35
TAAGTTCAACATATCG	alt_5757_new	17	17	25	17	24	15	23	16	25	13
TGCTGTGTTCATTTAG	alt_5757_new	0	0	0	0	0	0	0	0	0	0
TGGATGTGTTACGGTG	alt_5757_new	12	9	9	6	25	10	27	12	26	9
CCATTAGGTCTTCATA	alt_5757_new	7	18	8	10	12	14	9	8	5	8
TGTGCGATGTCCGTAC	alt_5757_new	4	10	11	4	14	7	5	10	13	5
TTTAACCAGATGTCCA	alt_5757_new	2	16	5	9	13	7	15	5	11	5
TGATCATTTACGGCTA	alt_5757_new	27	52	47	31	56	29	47	31	52	34
CTCACCAGCAGCTTAA	alt_5757_new	7	16	16	15	20	11	18	13	24	11
TCTTATTCTTTATAAG	alt_5757_new	45	63	43	45	60	44	57	34	77	32
GCCGCCTTGTGACTCC	alt_5757_new	11	8	14	3	14	9	15	8	15	4
CATATGTACAGCCCCG	alt_5757_new	0	0	0	0	0	0	0	0	0	0
TGTCTTTTTCCATTTG	alt_5757_new	10	17	19	16	16	10	14	13	17	11
CATTTTGTCGTCTCAC	alt_5757_new	3	4	6	4	2	0	4	4	7	3
ATGGATTCCGCGCTCC	alt_5757_new	0	0	0	0	0	0	0	0	0	0
TTTTAAGCTGACTTCA	alt_5757_new	16	29	27	10	19	10	28	7	22	11
CGTCCTCATAGGTGCC	alt_5757_new	14	24	27	16	36	12	33	8	27	19
GTAAGGTGTCACGGTA	alt_5757_new	44	67	54	44	63	26	86	37	70	40
GGGCGGTCTCTAATCA	alt_5757_new	17	37	32	21	28	16	35	23	28	17
CTGCTTTGGTACCTCG	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
TGCATGGCCGTTAACA	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
CTTTTGTGCGTTCACC	ref_1117_RC	34	41	54	50	29	38	41	38	62	41
CTTTTGCGTTTCTGTT	ref_1117_RC	2	3	10	4	7	4	2	6	7	4
GTGGGTTCTAGCAGTT	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
CTTGGAACAGAGCGCA	ref_1117_RC	250	226	317	305	248	249	252	265	293	217
TCGTGTTAGCTGAACG	ref_1117_RC	154	112	163	149	115	151	164	102	144	124
GACGGAGACAGCAGCT	ref_1117_RC	55	66	93	62	53	72	83	67	74	54
TCTATCCGTCCCGCTA	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
TGGATACTAGGGGCTG	ref_1117_RC	22	13	24	7	13	10	17	19	22	9
TGTTTATTTGTTCGGA	ref_1117_RC	27	22	31	24	24	19	24	30	19	19
AGCATGCTTAGGCGCA	ref_1117_RC	77	94	87	90	95	67	111	103	127	87
ACTCGTAGGTAAAGTC	ref_1117_RC	14	15	15	13	17	16	11	8	16	12
AACAACTGCACCCTGG	ref_1117_RC	59	35	62	67	50	61	45	57	48	42
GCTAGACTATGACTTC	ref_1117_RC	30	44	61	24	35	37	40	29	46	17
TGGAAAGTGTGTTTAC	ref_1117_RC	51	45	76	47	64	35	55	43	75	44
GGCACTTAGTATTCTG	ref_1117_RC	122	134	140	102	134	110	122	119	136	115
GTTGGTATCTCTTAAT	ref_1117_RC	34	21	37	36	25	30	37	29	27	33
CTGCGGAGTCAATGCC	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
GTCGCGCAGACTTAAT	ref_1117_RC	14	12	14	9	9	9	19	16	12	10
GGTTCACTCCTACACA	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
ACGATGTATATATCTG	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
CCATGGCATACATCTT	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTTCAAGTATTA	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
AGCCGTACATATTCTA	ref_1117_RC	28	33	46	43	33	29	41	37	34	30
CTCTTTCTATGGTATA	ref_1117_RC	30	49	34	31	39	34	41	35	32	24
CTCAATTCGATCGGTT	ref_1117_RC	80	107	122	99	90	93	96	87	89	101
AATAATCACTTTAAAA	ref_1117_RC	60	71	80	88	72	64	54	73	85	71
GAGTTTTTGCGTCATC	ref_1117_RC	13	15	14	23	12	14	13	18	20	11
GCGGGGCGGAGAGGGA	ref_1117_RC	40	27	49	34	23	29	35	26	31	33
GGTGTGTTGTCCATTT	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
CCAATTGCGTTCGACA	ref_1117_RC	0	0	0	0	0	0	0	0	0	0
ACCCATGGTCGTAATT	ref_1117_RC	33	24	40	26	29	19	30	17	22	30
TCTGAGGGATCATTCT	ref_1117_RC	3	2	0	3	1	2	0	3	3	2
AGTCCGCTCGTTCGAA	ref_1117_RC	32	38	45	40	43	31	30	19	52	32
CTAAATCGTAACTCCC	ref_1117_RC	22	120	33	26	170	22	151	27	185	27
TACTGTCTACATCATT	ref_1117_RC	18	28	22	23	19	24	21	17	30	22
TTAGAAGGTAGTAGGG	ref_1117_RC	31	37	49	30	36	34	26	36	35	26
CGCACGGAGCTTTTTT	ref_1117_RC	226	171	253	247	184	216	187	201	173	196
TGGGTTTCGTACTATC	ref_5873_new	0	0	0	0	0	0	0	0	0	0
TGGTGCGTGCTCCTGG	ref_5873_new	12	12	15	10	14	10	14	3	24	14
GTTCGTGTGGCATGTT	ref_5873_new	0	0	0	0	0	0	0	0	0	0
AAGAGGCACCTTCTCG	ref_5873_new	17	23	15	30	41	19	39	20	35	20
CATGCTTTTGCCGACC	ref_5873_new	45	69	61	42	62	40	60	38	70	28
GTCATTAGGCCCATGA	ref_5873_new	10	10	13	12	14	11	15	11	14	6
GGATTCGACGTTATGC	ref_5873_new	7	23	6	12	21	5	32	6	28	7
CCTCTACCTTGGCCCG	ref_5873_new	21	24	23	11	22	16	25	20	30	13
AATGCCTACCGATAAC	ref_5873_new	7	21	13	13	11	12	15	14	12	15
GCGGTTCAGTCAGAGC	ref_5873_new	41	57	32	47	57	39	54	50	72	37
GGATGGGCTGAGACTA	ref_5873_new	31	56	40	48	48	29	50	28	63	32
GCCCCCTAAGGCGCGG	ref_5873_new	7	11	14	5	11	14	8	3	20	11
TATTGCGAAAACTTGA	ref_5873_new	23	26	43	33	33	19	34	24	32	20
CTCCCATTTTTATGCT	ref_5873_new	2	19	4	3	15	1	19	1	19	1
ACCATAGGGTCGAAAT	ref_5873_new	13	19	17	13	31	10	23	17	33	17
CTGCCGAATTTTGTAT	ref_5873_new	27	38	30	26	31	34	48	30	42	24
CTACGAGTCTTCTTCA	ref_5873_new	0	0	0	0	0	0	0	0	0	0
TACAATCCGACATCTT	ref_5873_new	1	3	2	2	3	4	5	1	6	3
GCATGACTTCGACTCC	ref_5873_new	0	0	0	0	0	0	0	0	0	0
CCGGCGCTTTTCAGCG	ref_5873_new	16	9	18	16	10	13	17	19	17	12
TGACGAAACTTGTAAG	ref_5873_new	17	17	24	34	11	10	20	21	27	21
TACAATGTAAGGTAAA	ref_5873_new	17	32	9	17	26	14	19	14	18	14
CCAGAACTTTTATTTC	ref_5873_new	37	104	75	64	101	59	117	40	107	50
TGACTGTGCTTCGGCG	ref_5873_new	34	59	29	31	86	24	53	21	77	25
CGTGTATTGATTGCGG	ref_5873_new	31	53	38	34	63	37	61	21	51	30
CAAGCGGCGTTCGAGT	ref_5873_new	5	10	4	7	3	8	16	5	9	4
TGGGGTATACAATATT	ref_5873_new	31	25	25	18	33	23	41	22	39	23
GTCTGGACCTGGACCC	ref_5873_new	3	10	9	6	12	1	5	6	6	12
AATTATGCACTATGCC	ref_5873_new	16	16	18	12	34	11	23	11	21	11
CATGGACTTGATTATA	ref_5873_new	0	0	0	0	0	0	0	0	0	0
GGGATCGCAGACTTTA	ref_5873_new	2	2	5	1	6	1	3	3	9	3
CAGTTTTGGTACACGG	ref_5873_new	48	75	43	42	70	34	62	37	70	28
GTTCACCACCGAGTTC	ref_5873_new	0	0	0	0	0	0	0	0	0	0
CCTTGATATATATCCT	ref_5873_new	0	0	0	0	0	0	0	0	0	0
TATGTATTCTCGGAAA	ref_5873_new	15	25	19	11	18	19	30	15	27	18
TCACATTTGATTCCAG	ref_5873_new	6	8	6	2	8	3	3	5	9	8
CCGATGGTTTAGGGGG	ref_5873_new	69	64	64	47	63	54	83	43	77	35
ACCGGACAGTCTTTAT	ref_5873_new	3	6	2	7	6	3	5	6	2	5
CCTTATCAGCTTCGAT	ref_5873_new	28	34	29	20	52	10	39	22	39	15
TCGGCAAGGGCGCATT	ref_5873_new	15	13	17	15	24	10	11	10	17	13
GGCCTAAGGCGTACCA	ref_5873_new	0	0	0	0	0	0	0	0	0	0
AACCACGAGAGATTCT	ref_5873_new	0	0	0	0	0	0	0	0	0	0
GTCTGACATGAAATGT	ref_5873_new	11	31	8	24	18	9	31	14	27	18
GAGTCAAACACTGGGG	ref_5873_new	0	0	0	0	0	0	0	0	0	0
GGTTTCCATCACATGT	ref_5873_new	0	0	0	0	0	0	0	0	0	0
ATTTAATATTGGGATC	ref_5873_new	32	75	57	46	67	49	69	41	55	44
TTATGTCATCTAACGT	ref_5873_new	61	75	72	52	87	65	100	62	97	50
CCCGGAGGCTGGTGGG	ref_5873_new	3	10	3	2	12	1	5	3	4	3
ACGGTGAGCTGCCTTC	ref_5873_new	14	22	10	9	30	12	19	16	15	12
GTCATCAGTGCGGATG	ref_5873_new	24	35	32	29	36	17	41	18	38	19
CGTAGTATGACGGCCT	ref_5873_new	118	136	103	114	154	101	182	110	152	73
CAGGGCTGGTGTATTG	ref_5873_new	19	40	15	33	41	21	50	17	39	21
GTATTAACGAAAATGG	ref_5873_new	17	35	27	22	25	20	31	12	40	18
TCGTACTTATATCTCT	ref_5873_new	4	7	8	4	17	5	11	7	14	6
ATTGCCGCCGCCGTTT	ref_5873_new	20	29	19	18	23	28	31	25	34	16
GGCTAACCACAAAATT	ref_5873_new	55	61	75	55	63	44	85	41	69	45
AATCCTCGTATCTTCA	ref_5873_new	0	0	0	0	0	0	0	0	0	0
CATGGTGCAGGTTATA	ref_5873_new	210	304	243	191	230	180	256	172	300	144
CTTATTGCCTCCGGCT	ref_5873_new	4	2	1	1	5	2	3	3	10	2
GGGGCTCCACGCCGTA	ref_5873_new	7	25	20	18	28	16	21	25	39	12
GTTGCCTCTCACTAAC	ref_5873_new	22	45	37	25	59	28	35	25	52	39
ACCATCGTTCAATGCA	ref_5873_new	10	8	5	7	16	5	6	6	12	2
CGCGGTTAGATGACCG	ref_5873_new	23	22	26	30	10	25	13	41	9	20
AAAATAAAGGATTCAG	ref_5873_new	6	2	8	5	3	8	8	10	13	6
CTGCATCGCTCGCTCG	ref_5873_new	7	17	8	8	14	10	21	4	19	4
GTCCACCCTAGAGCCC	ref_5873_new	5	10	5	5	8	3	3	4	8	3
TGGCGTGTCCATCCCG	ref_5873_new	0	2	6	5	5	1	3	1	6	2
AAAGCCACTGAACAGG	ref_5873_new	0	0	0	0	0	0	0	0	0	0
GTTTGTCCTGGATTTG	ref_5873_new	13	28	22	12	24	9	14	9	26	13
ACGTTACGCAGACATT	ref_5873_new	3	10	4	9	13	4	9	4	14	7
TACTTAATTTTCGTCG	ref_5873_new	0	0	0	0	0	0	0	0	0	0
CTTGACTCCACACACA	ref_5873_new	4	6	9	4	17	7	11	8	16	2
CTTAACCTTTCATTTT	ref_5873_new	17	23	23	31	20	31	31	17	42	20
GGAATACGACAGATTA	ref_5873_new	15	26	12	12	14	16	13	10	16	11
TTACATCAGCTCCGTC	ref_5873_new	0	0	0	0	0	0	0	0	0	0
TAGTCTTGGAAGCAAC	ref_5873_new	0	0	0	0	0	0	0	0	0	0
ACTTCACCTGAGGTGC	ref_5873_new	0	0	0	0	0	0	0	0	0	0
ATAGGGGACTCAGAAT	ref_5873_new	5	10	13	9	17	6	17	4	22	8
CTTGTAAGCTGCGCAA	ref_5873_new	0	0	0	0	0	0	0	0	0	0
CTCGCTTAAAATTACA	ref_5873_new	2	0	0	2	0	1	2	0	0	0
TGTTCCAGTTCGCTTG	ref_5873_new	24	66	38	45	35	28	64	33	54	26
TGATTGGTCACCCACA	ref_5873_new	5	9	7	3	6	7	8	7	9	4
CCCTGAGGTGATCAGC	ref_5873_new	28	45	46	26	56	28	60	16	57	32
TGCTCGTCTTAACTTT	ref_5873_new	0	0	0	0	0	0	0	0	0	0
GATCAGTCTTGTGCGC	ref_5873_new	2	4	6	2	4	1	1	2	2	4
TAGATTGACTGTAAAT	alt_2295_fdr	33	28	53	31	34	42	43	32	44	32
ATAGGACACATGTTAT	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAAGGGCCCTGAC	alt_2295_fdr	27	22	29	22	22	20	13	18	19	38
TGTCCGCATCTTCCCC	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAGTTTTCACCTA	alt_2295_fdr	146	138	189	146	181	163	178	134	172	142
TACACTTTCTAGCCTG	alt_2295_fdr	7	27	15	15	27	20	19	7	20	20
TAGGGTATGTCTATCC	alt_2295_fdr	17	15	12	11	6	8	15	5	16	7
ATAGATAATCTTCACC	alt_2295_fdr	111	64	110	91	81	111	82	107	94	93
CGCCTAGTCTTGAGAA	alt_2295_fdr	8	6	9	7	6	3	5	7	6	8
GGCTTATCGTACTTGT	alt_2295_fdr	8	12	11	7	8	10	6	6	6	6
TGCTACCCATTTCTTC	alt_2295_fdr	82	57	82	71	65	56	71	72	70	69
TGGTAAACTAGGATTT	alt_2295_fdr	67	73	100	70	46	70	60	50	79	58
TTCCGAGTGACTGCAC	alt_2295_fdr	18	25	21	19	20	14	34	16	18	20
CGTTCGTTAGGTCTCT	alt_2295_fdr	113	107	163	109	91	111	101	129	107	115
GGGACTGAGCTGTGTG	alt_2295_fdr	2	0	0	1	0	1	1	0	0	0
CTGCCACCGGGGATTG	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
ACAATAAAGCGATGCC	alt_2295_fdr	0	0	0	1	0	2	1	2	0	0
CCTTTTCTGTTATTTG	alt_2295_fdr	99	182	132	130	172	113	181	108	160	88
TCCATCGGACATTCCG	alt_2295_fdr	310	260	365	293	278	301	273	264	278	282
ACGAATGTTTTTAATT	alt_2295_fdr	30	22	39	22	31	17	14	31	30	27
CATATATACGGTAGGG	alt_2295_fdr	14	12	21	11	16	14	13	18	13	17
GGCTCTGAGCGTGGTG	alt_2295_fdr	50	28	59	39	43	49	38	32	53	49
ACAAAGAATCTTAACT	alt_2295_fdr	60	46	64	49	53	43	43	59	42	32
TCCTGCCGAAAAACTT	alt_2295_fdr	145	158	214	131	195	149	192	138	162	173
GTGAATGTAGGCGCCT	alt_2295_fdr	139	87	146	110	86	118	92	111	98	117
GTAACTGGTTTGTTTT	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAATATCTGCATT	alt_2295_fdr	42	43	47	47	35	56	50	46	30	46
CGGATTCTATATATAG	alt_2295_fdr	22	23	25	21	13	24	18	19	17	18
GTATGCGCCTGAGTAA	alt_2295_fdr	31	21	32	20	25	33	14	27	21	22
GTGGTTTTGTTTCACA	alt_2295_fdr	56	70	91	65	57	57	63	54	69	62
CCGGCGGTTTTCGGGA	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTGCAGGGTACAA	alt_2295_fdr	253	139	270	205	182	222	178	218	178	224
GTTGAATCGATTCTGG	alt_2295_fdr	60	33	72	44	67	49	43	52	32	61
GGCCCGGTTGAGGCGG	alt_2295_fdr	13	13	15	12	11	13	13	12	11	12
ATCATATCGATTCTAA	alt_2295_fdr	13	3	2	6	9	6	11	3	9	8
TACCCCGACCCGTACC	alt_2295_fdr	109	124	147	104	133	98	143	93	144	88
TCTTTGGTCGATTTGT	alt_2295_fdr	139	130	129	108	107	109	122	85	126	103
AAATGTCTTCGGTAAG	alt_2295_fdr	47	29	52	46	38	43	49	44	54	67
GTTTCCCACGAGAATA	alt_2295_fdr	41	24	49	38	35	42	30	37	47	47
TCTTAGATACTCAACT	alt_2295_fdr	34	40	44	33	29	38	34	34	35	36
GAGTGTTAGGGTTCGG	alt_2295_fdr	31	25	54	34	42	34	37	38	30	27
GAGAAGCGTACGATCA	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTGGCAGATATAC	alt_2295_fdr	83	57	96	75	92	79	80	65	96	91
CGACCTTGGGCACAAA	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
TTATATATCTCTATCT	alt_2295_fdr	119	85	112	86	86	107	103	74	98	72
CTAGCTTTGTCCGAGT	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
TTCCATTAACTTCCTC	alt_2295_fdr	48	34	58	44	43	48	45	46	55	45
TGCCGGAGTTCACCTG	alt_2295_fdr	1	0	2	1	1	1	2	1	0	0
TTCTATACATTTCATT	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCGATGTCCATCT	alt_2295_fdr	130	74	110	117	92	97	123	68	96	103
TATGACTGTTTAATTG	alt_2295_fdr	18	13	17	19	14	21	13	21	14	17
TTACGCCCAAGTGGGT	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
TCCGACCTCGCAGGTG	alt_2295_fdr	0	0	0	0	0	0	0	0	0	0
TACTACAATTGACGTA	ref_2295_fdr	120	100	132	103	103	102	104	111	112	122
GAGAGCAACTCTACAA	ref_2171_upstream	24	5	36	31	18	16	17	21	24	24
ATATGTTGGCAACTTA	ref_2171_upstream	284	200	323	275	210	208	205	245	194	227
TTACGGTGGTCTAACT	ref_2171_upstream	157	78	178	143	82	153	74	137	86	137
TGTGATTTATACTTTA	ref_2171_upstream	49	28	59	59	28	60	42	63	39	61
ACGCTCGCGACTAATC	ref_2171_upstream	6	8	14	8	5	8	2	6	12	6
ATGCCGTATGCCCAGC	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCTGCATCACGAC	ref_2171_upstream	222	135	238	225	142	207	157	200	147	214
CGGCCATATGTGTGAG	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
CCATGTTCAGCGAAAA	ref_2171_upstream	12	9	15	25	11	15	8	8	8	12
CGCCTGCATCGGGATT	ref_2171_upstream	77	46	94	70	47	50	55	50	53	64
ACAGGAACAATTCAGG	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCGGTCCTGAGTA	ref_2171_upstream	30	29	12	22	30	23	37	22	23	8
AGCCCTGCATCACGAC	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTGCTCGCGTCCC	ref_2171_upstream	68	50	106	88	45	72	43	82	47	86
TGTATTCCGCGGGGGT	ref_2171_upstream	60	33	49	56	21	55	38	54	20	48
GTAAGTTATTACCACA	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCAGGTTGTGAAG	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
TCCATGGTACGTGTGA	ref_2171_upstream	145	68	184	134	80	115	111	132	96	115
TCTACATCATGAGTGG	ref_2171_upstream	156	95	186	179	105	156	104	148	93	150
GAACAAATTGATTTTT	ref_2171_upstream	55	17	41	36	43	54	23	44	22	38
ACTGCTTAAGTTCAAC	ref_2171_upstream	94	51	130	73	46	68	51	84	58	87
GCCATATCCTCGACAA	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
TATCCGAATCGGTGAG	ref_2171_upstream	11	8	18	16	7	13	4	15	14	10
TCGCTATCACCCCTCT	ref_2171_upstream	32	23	22	30	18	27	25	30	19	19
GCGCATGATCCTATCT	ref_2171_upstream	392	183	503	397	195	419	174	397	196	383
TATCGAGGAATACTCA	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
AACTTCGTACACGTGC	ref_2171_upstream	31	25	25	33	23	18	20	23	32	30
GTTAACGTTGCTAATC	ref_2171_upstream	84	50	110	79	52	85	45	56	37	65
CGGATCACGCACAAGG	ref_2171_upstream	95	54	113	105	50	97	48	85	46	68
ATGATGAATCATGGTT	ref_2171_upstream	65	34	114	80	39	80	41	79	33	80
TGCTCCGGTTTCGTAG	ref_2171_upstream	68	27	65	53	29	49	42	41	24	34
GCTGTAATTCCGCTTT	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
TCATTTGGTCTTATCG	ref_2171_upstream	107	62	110	116	65	110	50	90	68	98
TAGCACTTACGTTGTG	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
GACTTCTTTGAAATAC	ref_2171_upstream	33	24	56	42	15	50	23	38	18	28
TGAGAGGTTGCTATCT	ref_2171_upstream	89	48	83	73	48	64	43	74	35	78
AGACTTGTTGCTTTTT	ref_2171_upstream	57	29	58	61	39	67	33	69	37	50
TAGCTTAAGTAACGCA	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGATAGCATTAGT	ref_2171_upstream	94	51	120	79	86	117	77	102	84	106
ACGCGAAAAGCCCCGT	ref_2171_upstream	0	0	0	0	0	0	0	0	0	0
CTTATTATAGTGTGCG	ref_5539_reverse	8	6	12	5	9	5	5	7	9	7
TTTAGGATCCGTTGGG	ref_5539_reverse	17	18	34	22	18	28	33	28	27	23
GTGATAAGCGAAGCTA	ref_5539_reverse	76	69	66	69	64	79	65	72	77	69
CGTGTACAGAAGTAAG	ref_5539_reverse	23	10	14	15	14	8	25	17	18	19
AAGTCTTAGACTGAAA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTATTCGAATTAT	ref_5539_reverse	10	4	4	5	4	8	11	4	3	8
CCAGGCTTGGAACCCG	ref_5539_reverse	69	64	76	52	47	52	66	47	48	45
GCTGCTCCCTAATCCA	ref_5539_reverse	176	143	175	152	132	141	123	159	130	156
GCCTATTCGTTGTGTG	ref_5539_reverse	26	28	56	38	26	46	45	31	41	35
GATTACGAGCTGAGTG	ref_5539_reverse	9	13	23	15	19	14	26	13	15	13
CTACAGGTTCCGTGTA	ref_5539_reverse	15	9	8	5	12	9	9	9	9	9
AGCATCTTTCTTGTCC	ref_5539_reverse	12	9	13	12	11	8	14	11	9	11
AACAGTGCACGTCTCC	ref_5539_reverse	37	37	57	42	46	40	44	36	47	27
GGGGCAAGTGCTTTTC	ref_5539_reverse	22	25	37	25	35	18	19	27	32	23
AATCACATGCGTACAA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCTAATTCCTCCA	ref_5539_reverse	82	57	91	73	60	61	57	73	54	75
ATGCCTATCTATTCAA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
CTGCAGCGCCTCTCTC	ref_5539_reverse	1	10	1	3	3	0	5	1	7	1
GTTCTGGTACCCTTAG	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
AGGACTTTATCAACTA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
GATTTTTGCGTTTCAA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAATTAAATCCGT	ref_5539_reverse	16	13	14	18	8	28	20	20	8	15
TAGATACCGCCGTGTA	ref_5539_reverse	20	31	33	25	35	21	34	27	31	30
CGTCATTAGGGATTGT	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGGTAGGTCTTTA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
CATCAGATATTTATCA	ref_5539_reverse	15	12	13	23	17	18	13	11	13	15
GTTTCGCTGCACCATG	ref_5539_reverse	68	50	80	69	43	68	48	60	75	55
GAAGGTCACTGGGTAC	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTGTTTTCGTGCC	ref_5539_reverse	9	8	12	9	17	10	5	7	6	5
CCCTCCGGTGGTATTT	ref_5539_reverse	14	10	8	8	10	9	8	20	6	5
TTTTTGCCTAATTGCG	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTTCTTCGTACGG	ref_5539_reverse	238	273	265	252	237	229	243	202	253	203
TCGGTTAATCTTACTC	ref_5539_reverse	69	43	70	46	56	64	43	65	49	66
AATAACACAGTCACTC	ref_5539_reverse	7	7	7	5	8	5	14	2	7	1
GTACCTTACACGACCC	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TAATTAGTTAATGAGC	ref_5539_reverse	35	25	35	40	31	26	23	25	26	18
GCGCGAGTGTCCTGTT	ref_5539_reverse	105	93	120	105	113	96	109	90	121	80
AACCTAGTATGGTTGT	ref_5539_reverse	15	11	24	18	19	15	18	16	32	16
GGTGAATAACATATTA	ref_5539_reverse	24	29	38	31	31	24	30	32	43	30
GAGGCAGAATTGGTCC	ref_5539_reverse	5	8	3	2	13	2	6	6	6	6
CAGATCTGAGTATAAG	ref_5539_reverse	14	9	21	10	10	13	13	11	7	11
TTCGAGCTACGTCCCC	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
GAAAGTACGCAGTAGG	ref_5539_reverse	17	11	24	15	13	22	21	15	15	12
ACAGGCAATAGCTGCT	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTAGTTACACCAT	ref_5539_reverse	78	82	89	64	83	71	88	80	77	40
ACCGCGGTCGTGCCAA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGTTTCCCTGTCA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
AACGAAACTAACTACG	ref_5539_reverse	48	41	61	49	46	50	35	41	44	35
GTGCATATCTAGTTCG	ref_5539_reverse	15	7	24	27	13	14	23	21	18	15
TGCCTAGGGTACAATA	ref_5539_reverse	42	34	32	32	18	26	35	27	48	24
GCCGTCCTCTCTGGTT	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TGTACCTGTTTAAGTG	ref_5539_reverse	26	32	22	36	36	26	21	20	35	19
TACTAGAGTAATGTTT	ref_5539_reverse	139	132	144	134	138	122	169	112	162	123
CAGGTATCCGGCTGGA	ref_5539_reverse	18	26	21	30	22	9	26	18	27	18
TTTTGAGTCATTGCTT	ref_5539_reverse	26	24	27	18	20	30	23	18	15	15
TAAACGTGGAACTCTT	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTTAGGGTATTCA	ref_5539_reverse	12	24	24	27	29	16	29	19	23	23
TATTGTAGTAACAATT	ref_5539_reverse	26	35	36	25	31	31	22	31	26	27
GTGACGTTACTGGCTA	ref_5539_reverse	9	8	11	5	15	4	7	13	6	5
CACCGTCCCCGTTATA	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
CTGTATATAGTGACGG	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TTGTAATTTTCGCTAT	ref_5539_reverse	62	67	95	66	77	61	104	72	102	77
GCTCGCAAACAGGGTC	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGACCAACAACCT	ref_5539_reverse	66	69	94	72	70	65	64	47	49	61
CGATCACCGTAAGCTT	ref_5539_reverse	23	36	43	30	30	28	34	37	39	26
CGATCCTCTCCTAGCT	ref_5539_reverse	38	25	34	38	39	38	19	31	26	34
TCGCTTCGGTATAGGC	ref_5539_reverse	11	11	12	14	23	19	12	22	17	16
CTGGGGTGGTCAGCAT	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
CGTAACCAGCGTCCTT	ref_5539_reverse	11	18	16	4	7	10	10	9	16	11
TCATGGTTTCACACTC	ref_5539_reverse	15	20	18	20	35	15	32	10	28	21
CCTGACCTCCCCTTTG	ref_5539_reverse	56	95	75	48	77	35	95	43	82	35
ACGCTGGACGGTGCGG	ref_5539_reverse	9	16	17	15	22	8	27	21	26	13
TGCATACGGGACGGAT	ref_5539_reverse	0	0	0	0	0	0	0	0	0	0
TTATAAGCCTTTCACA	ref_5539_reverse	57	55	53	48	32	41	50	21	41	26
GATGCAATGCTTCGGA	ref_5539_reverse	88	77	97	92	103	88	82	83	78	73
CGTACACGGCCGTGTT	ref_5539_reverse	47	38	66	59	36	59	42	29	37	43
ATCTCCGGAACGTGGT	ref_5539_reverse	57	59	73	74	58	60	46	59	65	42
CGTACTCTGTTTGTAA	ref_5539_reverse	60	85	59	49	81	46	64	46	95	49
GCTCTAGCGTTCGGCT	ref_5539_reverse	8	9	11	12	16	7	4	8	5	4
TCCAGCGCGGCGCTTC	ref_5539_reverse	47	105	112	80	82	73	93	74	81	83
GATATATCTCCTAACT	ref_5539_reverse	20	16	23	10	13	13	15	13	19	9
TGTTCGTAACAGTTCG	ref_5539_reverse	38	31	37	46	41	32	34	21	48	41
TGTGCTCTTTTTCGTC	ref_5539_reverse	154	161	198	167	165	150	135	155	141	151
TTCGAATGAGTGCAGT	ref_5539_reverse	10	20	30	31	27	16	23	23	28	9
CGTATCTTTGCTATAC	ref_5539_reverse	65	97	90	66	82	57	106	66	101	53
CTCATCAGTTCGTGGC	ref_5539_reverse	24	29	49	27	21	27	35	15	24	27
TTAGCTGTAAGCATGG	ref_5539_reverse	279	260	359	317	254	298	273	299	294	238
ACCTGGTAGGTCTTGA	ref_5539_reverse	46	40	42	52	43	32	45	41	49	32
TTTGTTCCAGTAAGCC	alt_1762_RC	47	66	57	58	86	38	76	44	65	52
ATGTTTCTTTTGTTTC	alt_1762_RC	12	21	12	14	20	14	21	16	11	21
CTGGATTGGACTGGGC	alt_1762_RC	40	63	43	36	59	35	67	42	78	52
CCTCTGAACAGCGCCA	alt_1762_RC	127	183	134	124	160	111	181	104	195	105
TGTAACGCCATCTACG	alt_1762_RC	17	25	15	13	20	22	12	10	22	15
TTCTGTTTAGCATATA	alt_1762_RC	38	37	55	36	56	35	50	31	59	44
GGATATCGCTCCTGCG	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
TGATAGGGGTTACCAG	alt_1762_RC	35	34	34	18	31	22	34	24	35	33
TGCTATGTGAAGCCTT	alt_1762_RC	31	50	35	40	57	33	43	34	48	34
CCCGATGGCGGCGATA	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
GCTCACCGCAACTTCT	alt_1762_RC	42	82	41	69	93	48	87	48	98	56
CACGGTATGGCCAATG	alt_1762_RC	19	48	28	31	39	41	40	21	46	31
TCCGGCTAGGTTTTGA	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
AATTTCCTCAGAGCAA	alt_1762_RC	58	75	73	82	84	67	71	60	100	69
ACCCGTGTAAGATCGC	alt_1762_RC	14	14	11	11	15	10	15	12	20	9
AATGGCGTATCTTCGC	alt_1762_RC	16	4	19	21	15	14	10	10	21	20
CTTTGCTTCTCGGGTT	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
GATGTACAAGCCTGGG	alt_1762_RC	19	32	44	21	32	30	21	21	32	14
ATATCGGGCGCTAGGT	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CTTATCGCCAGTACAG	alt_1762_RC	2	10	8	5	9	5	7	3	8	2
CAGTCTCGTCTGAAAT	alt_1762_RC	1	6	3	5	6	3	5	5	8	3
AAAGTCGCGCAAGTAA	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CGCAATTAACAACAAT	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CGATGGTACCGTGCTG	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CAAACTACATGTACCC	alt_1762_RC	5	16	12	14	16	13	11	9	22	8
CCTTTAGCGCTTGTGT	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
TTCCGTGGAGCATCGT	alt_1762_RC	32	46	36	49	49	38	67	40	66	37
CGCCCAGCACTAAGTC	alt_1762_RC	5	5	6	10	6	4	3	4	8	0
GTGAGAGTAAGGGTAC	alt_1762_RC	17	15	11	13	15	18	34	10	18	11
TAATGGCTGATGCTCG	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
TGTATAATGCTGATGT	alt_1762_RC	102	120	127	93	124	100	129	96	156	97
ACCAAAGCCGTTCCAA	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CCGTTTCTTATTTTCT	alt_1762_RC	11	19	3	1	24	6	15	5	13	4
CCTTCGCCGTTGCATC	alt_1762_RC	31	48	57	48	56	40	36	35	42	37
TTTGACGTTACTTCGA	alt_1762_RC	0	4	4	4	4	2	3	5	5	2
CATTCCTCCTTCAACC	alt_1762_RC	23	17	26	25	16	13	21	7	21	15
TCTTGATTCAACATGC	alt_1762_RC	34	66	52	35	63	36	70	40	75	37
ATCATATTCTTGATTC	alt_1762_RC	36	62	64	46	30	32	53	55	53	53
GAATTCACTAGGGGCC	alt_1762_RC	27	29	23	14	28	18	24	17	31	21
ATGACGCTATCTGCCC	alt_1762_RC	141	159	146	163	188	132	149	164	186	141
ACCTATTATCTTTGAC	alt_1762_RC	16	26	18	29	36	26	19	17	22	18
AACCCTTCTTAGAGGT	alt_1762_RC	22	24	17	9	21	20	34	16	30	11
GTCTGTTTTCAATCCT	alt_1762_RC	26	17	18	13	30	21	26	21	27	24
GCTCCTTATGATACTA	alt_1762_RC	40	65	68	63	78	36	71	40	76	39
TTACCCCAAATCTTTT	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CAGTGCATTATCACGG	alt_1762_RC	11	7	12	7	5	10	10	15	16	11
AGTTTATTCATTAATA	alt_1762_RC	6	16	6	3	16	11	5	3	15	3
TCCTGGCCTGTATTAA	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CGGACTGTGTTCCGTT	alt_1762_RC	5	12	12	9	9	7	10	8	9	4
TACCTTCACAAATCTG	alt_1762_RC	14	14	9	14	17	7	13	8	22	8
ACATCTACTAAGATTC	alt_1762_RC	24	55	34	27	46	37	49	24	33	30
TTGGTGGCTGTTCCGT	alt_1762_RC	7	20	14	7	13	9	12	6	10	5
CTGACTATTCTCCCAA	alt_1762_RC	30	59	32	30	61	27	51	32	73	41
GGGTTTCCAAACCTCT	alt_1762_RC	21	29	40	25	49	24	48	20	44	20
GCAATACTGGAGGGCA	alt_1762_RC	16	14	9	15	22	19	26	18	21	10
CAAATTGAGCTTTCCG	alt_1762_RC	61	47	47	36	67	39	51	38	55	30
GAGCGTTACATTAGTT	alt_1762_RC	1	5	4	1	6	3	5	7	6	5
GGCAGGGTGTATCGCT	alt_1762_RC	16	25	16	18	21	22	22	23	30	21
CATGTCCCGCTTACAT	alt_1762_RC	20	23	29	19	40	21	24	17	38	26
TTTACATTCGAACGTC	alt_1762_RC	14	11	10	14	16	5	9	10	7	6
AGAACCACAGTGGATC	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CACGGAAACTTCCTGC	alt_1762_RC	39	56	69	45	50	38	48	45	54	53
ATTGCAAGGGCCCCAG	alt_1762_RC	6	12	7	8	8	12	14	3	6	9
TTAGTGTGATACACGC	alt_1762_RC	53	88	81	58	101	56	63	50	91	57
GCCCGCATTGGACTCG	alt_1762_RC	27	30	32	36	36	26	39	24	41	24
GCTTGTGCCTGGCTCA	alt_1762_RC	15	7	6	5	6	5	20	10	14	6
CCTCAGCAAGTCAGCA	alt_1762_RC	24	20	17	22	30	20	33	14	19	14
AGGCTTGAGCATTTGG	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CACGCATTGTATATTT	alt_1762_RC	24	16	18	22	26	16	24	22	22	20
AGACGTGTTTCGGTAG	alt_1762_RC	3	4	7	6	8	2	3	6	7	9
ATGACTGGGCTTTTGT	alt_1762_RC	45	28	28	37	45	28	43	25	35	28
TGCGCCTAAGTGCTCA	alt_1762_RC	20	47	29	29	47	20	44	17	57	21
TTTTTTTTCTCGTATC	alt_1762_RC	48	38	47	25	58	31	57	46	45	39
CTAGGTACGCAATACG	alt_1762_RC	32	42	32	33	37	31	37	21	50	38
GTTTTATTGTCGCTTA	alt_1762_RC	7	7	11	11	8	10	17	8	13	6
AAAGGTACAGGCCAAG	alt_1762_RC	30	41	30	24	51	30	41	23	40	26
GTTGAGTGGTCAATCG	alt_1762_RC	103	143	154	122	181	111	154	102	141	89
TTTGATGCTCCTACTC	alt_1762_RC	11	20	16	15	16	12	14	3	11	8
CATCGTATAACCGCGA	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
ATTAGTTGCACCACCC	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
GGTATGTGTGCATCAT	alt_1762_RC	0	0	0	0	0	0	0	0	0	0
CGCTTACTGCGTAGAC	alt_1762_RC	28	41	34	42	53	27	54	33	51	27
TGTTTTGGACTCGAGC	alt_1762_RC	60	101	81	71	78	53	90	64	127	57
CTTATATCTCTATCGG	ref_5749_new	24	14	24	16	11	11	18	22	10	16
GGGGCCCTATCCTTGT	ref_5749_new	28	22	34	26	22	21	24	22	16	25
TCCTCCGACTTCGAGT	ref_5749_new	16	45	28	22	38	18	33	15	65	11
TTAAGCTTTGTTAATA	ref_5749_new	0	0	0	0	0	0	0	0	0	0
AAATGTTTGATCCTAA	ref_5749_new	162	103	229	218	105	146	119	165	149	170
ACAGATTTTGCATTCT	ref_5749_new	25	15	38	31	15	28	25	31	21	35
ATTTGGTGTGTTTACT	ref_5749_new	0	1	1	0	0	0	0	0	0	0
AGCGTGACCCTCTCCC	ref_5749_new	18	16	18	24	12	21	11	17	11	14
CAGGACAGGTATAAAT	ref_5749_new	0	0	0	0	0	0	0	0	0	0
AGTTAGTGGAGGCCGG	ref_5749_new	59	35	70	73	36	61	38	52	52	41
GCTTGATAGTACTCGT	ref_5749_new	5	2	2	10	10	4	0	9	4	5
TATCGTAGTAATTGGC	ref_5749_new	3	9	8	5	2	4	1	6	7	4
CTGCCACATGATTCGG	ref_5749_new	78	72	100	100	93	92	85	70	87	76
GATGATACTAGCGGCC	ref_5749_new	37	22	35	36	24	39	23	37	24	35
TTGTACTCCAAACCCA	ref_5749_new	37	27	49	37	24	37	39	35	36	34
TCGGCGGTCGACAGCA	ref_5749_new	0	0	0	0	0	0	0	0	0	0
AACGGCCTCCAACCGT	ref_5749_new	68	50	69	68	49	62	48	62	36	63
TGGCAAATTATCCCTG	ref_5749_new	0	0	0	0	0	0	0	0	0	0
GCTATCACGTGCGCCC	ref_5749_new	0	1	0	0	0	0	0	0	0	0
GGCGTCCTGGTTGGAA	ref_5749_new	52	39	63	79	54	60	49	69	40	44
TATGATTTTGAAACGC	ref_5749_new	0	0	0	0	0	0	0	0	0	0
GAAAGTTGGTCATTCT	ref_5749_new	90	62	122	84	65	95	60	90	53	71
AGCTTTGTATTCTGTT	ref_5749_new	92	43	100	94	59	85	65	78	54	80
GCGTGGAAGCAATTGC	ref_5749_new	10	5	17	16	8	15	12	12	6	8
TTTAATTTCTTTAAAG	ref_5749_new	0	0	0	0	0	0	0	0	0	0
GGCGCGCCAGTCTTTT	ref_5749_new	136	99	180	130	72	119	75	120	93	112
AGCCCTGATATCTAGA	ref_5749_new	0	0	0	0	0	0	0	0	0	0
ATTAGCTGTGCCGCAA	ref_5749_new	12	8	26	15	19	13	9	10	16	13
TAAGACAGGCGAAAGT	ref_5749_new	34	23	38	36	24	37	33	46	26	33
CAGCTCGGAAAGGGCA	ref_5749_new	3	2	0	2	2	3	2	0	3	0
ATTAGACTATTCGCAG	ref_5749_new	255	216	327	266	220	249	202	292	232	240
GGTAAGTTAGTCAATC	ref_5749_new	34	28	37	41	18	21	17	22	21	26
CCATAAATAATTGGTT	ref_5749_new	128	119	155	155	126	147	139	135	116	133
TCATTATCTGGACTGC	ref_5749_new	54	34	55	34	16	49	31	30	34	32
GCGGTAGATTGTCTCA	ref_5749_new	0	0	0	0	0	0	0	0	1	0
TTAACTTATCGGTCCG	ref_5749_new	26	21	50	33	32	36	29	48	28	26
GTCATCATATTACGGC	ref_5749_new	43	23	39	49	25	35	17	36	39	36
GTGGGGGACATTCACC	ref_5749_new	0	0	0	0	0	0	0	0	0	0
TGACATATAGCCAAAA	ref_5749_new	25	15	39	26	13	21	25	22	11	19
ATACTGAGCGTAGTCC	ref_5749_new	0	0	0	0	0	0	0	0	0	0
ATGTGTGATACTTGCG	ref_5749_new	45	16	29	33	36	43	27	27	41	35
GTTCTCGATGGTCTCA	ref_5749_new	297	192	367	284	226	273	201	294	221	262
TTGACAATGTTACCGT	ref_5749_new	26	13	36	37	23	21	29	29	29	31
AGCCGGTTTATTTGTT	ref_5749_new	85	51	123	83	73	82	83	82	79	83
CATAGCGGCGCGAAGT	ref_5749_new	117	80	139	111	91	85	72	101	85	83
TGGAATTCATTCCTCA	ref_5749_new	240	167	310	230	123	214	160	212	204	222
ATGACGCACTCCACTC	ref_5749_new	37	22	28	28	28	31	28	27	36	28
AGAAACCGTTTATTGG	ref_5749_new	0	0	0	0	0	0	0	0	0	0
AGAGCATAAGAGCAAG	ref_5749_new	113	72	100	91	70	94	54	83	65	98
TCCCATGGCCCTACGA	ref_5749_new	0	0	0	0	0	0	0	0	0	0
ATTATCGAACTCCGGA	ref_5749_new	96	47	114	78	50	85	47	101	76	104
GCTATACCTGCCGGTC	ref_5749_new	10	12	26	11	11	14	13	14	9	18
TCGCATAGCCGTTCCT	ref_5749_new	0	0	0	0	0	0	0	0	0	0
TGACGGCACCGAAGCG	ref_5749_new	11	10	10	14	9	16	10	13	7	14
TCTCTTAGTGCTAGTT	ref_5749_new	14	19	21	14	10	18	18	14	14	12
TCAGGTTACCTCCAGA	ref_5749_new	38	26	56	44	30	41	32	28	28	38
TATGTTAACGCACCGA	ref_5749_new	46	32	61	42	29	53	44	41	39	32
TCTTGTATTTTCTGCC	ref_5749_new	81	67	120	108	69	102	54	102	59	104
ATTCGGCCTGTAATTG	ref_5749_new	52	30	52	51	36	44	32	55	33	46
GCGCCTTCAGCCTCTA	ref_5749_new	22	11	23	23	21	26	8	19	15	23
TCGGCTTCAATAGCGT	ref_5749_new	91	89	144	118	101	75	69	124	80	95
CGTTCCTATGGGCCTT	ref_5749_new	0	0	0	0	0	0	0	0	0	0
ACCCTTAACCTTACCT	alt_5749_new	38	98	38	46	112	30	118	27	121	22
TCAAGACGAACATTCG	ref_5749_new	99	78	108	125	95	96	100	117	105	94
TAGTTGATCTTTTAAT	ref_5749_new	0	0	0	0	0	0	0	0	0	0
TGTTGACTGTTTTCAT	alt_5966_new	249	215	334	243	204	241	210	246	201	224
GCCCAAAACTCAACTT	ref_5749_new	260	238	450	360	266	312	285	335	275	360
TCAATTGAACTATCTA	ref_5749_new	13	12	15	15	5	12	6	18	9	13
CTTAGAATTCTAAGAA	ref_5749_new	38	20	44	30	29	29	21	30	28	36
ATCTGTCGTCTGGAGA	ref_5749_new	0	0	0	0	0	0	0	0	0	0
GATATGACTTCCGCTC	ref_5749_new	18	14	25	23	23	21	21	24	20	29
GCCGGTGTCTCGTCTC	ref_5749_new	34	17	33	22	14	28	25	27	19	27
ATCTCATAGACAGAGG	ref_5749_new	15	14	34	40	25	22	19	16	24	20
TGTAATTGGCTATGAC	ref_5749_new	0	0	0	0	0	0	0	0	0	0
TGATATAAATCATTGC	ref_5749_new	19	7	14	19	9	18	17	19	10	21
CGGGGTGATAGCTCAA	ref_5749_new	70	84	124	110	79	102	71	110	74	80
CTGCTCAACTCACTGA	ref_5749_new	0	0	0	0	0	0	0	0	0	0
CTTCACCGTCCAGCTA	ref_5749_new	15	10	15	5	5	14	10	8	11	6
TAAGAGGCTGTCCAGG	ref_5749_new	0	0	0	0	0	0	0	0	0	0
ACAACCTAAGGGCATT	ref_5749_new	19	13	9	12	8	18	10	18	5	11
GATTTCTCTCCTCTGG	ref_5749_new	0	0	0	0	0	0	0	0	0	0
GCTTGATAGAACTCTG	ref_5749_new	8	6	4	8	8	6	4	3	6	5
CAGTTGCCTTGATGAG	ref_5749_new	0	0	0	0	0	0	0	0	0	0
GCATGTTGGTAAGAAT	ref_5749_new	125	75	184	125	92	102	101	94	91	104
AGGACTATTTTCAGCG	ref_5749_new	65	59	68	61	48	67	47	82	53	55
TGTTGTTGGGATAATT	ref_5749_new	9	13	11	12	8	13	5	12	13	11
CAGTCGGGTCCCTTCT	ref_5749_new	0	0	0	0	0	0	0	0	0	0
CTCCACTTCTAGGGTG	ref_5749_new	15	7	18	14	19	17	21	14	9	18
CGTGAACTTCCAATTT	ref_5749_new	5	5	3	3	2	1	0	2	3	2
AATGCTTTCTGTGCTG	ref_5749_new	176	118	210	174	122	165	144	147	152	130
TGATCTTCTATCATGG	ref_5749_new	27	16	32	38	22	41	25	32	39	32
GCTATCACGTGCGACC	ref_5749_new	223	139	318	223	141	207	157	185	159	182
GAGCCATTGCCTGCTT	ref_5749_new	58	42	70	57	32	50	33	45	47	63
ATACTAACAATTTTAA	ref_5749_new	0	0	0	0	0	0	0	0	0	0
ACAGAGTCTCTAAGCT	ref_5749_new	0	0	0	0	0	0	0	0	0	0
AGTTGGTCCATATCAC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TATACGCTACAAATAT	ref_3943_upstream	36	48	31	18	36	19	50	32	41	31
TCTTACGGCCCCTTCT	alt_3943_upstream	84	88	85	77	106	64	87	73	112	69
ACGTAATTACTCCCGG	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
GAAAACTTCTTTATCC	alt_3943_upstream	23	28	31	23	52	36	14	24	26	11
TTGCCGATTAAGTAAT	alt_3943_upstream	158	178	186	173	160	145	191	153	159	136
GATACTTTCCTCTCAT	alt_3943_upstream	53	49	55	50	48	46	52	36	54	39
TGGTTTTTTTTACCTG	alt_3943_upstream	8	15	9	11	12	14	12	15	12	3
TAAATCTTCATCTACT	alt_3943_upstream	110	148	135	110	135	114	137	106	154	97
CTCCTTGCGCGACCGT	alt_3943_upstream	59	54	53	53	66	52	60	51	59	47
ATCGCCAGTCTAACTG	alt_3943_upstream	23	42	38	29	47	22	38	22	38	16
GTTCTCTCATGGAATA	alt_3943_upstream	47	59	47	45	49	35	49	44	46	50
AGGCATTTAAGCTGGT	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTTAGCGAAATT	alt_3943_upstream	17	21	36	24	35	17	26	23	28	14
GTTTACTCGTTCTCAA	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCTCCGTCTACGC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
CACTCTAGGCCCGTAC	alt_3943_upstream	14	33	31	15	29	24	49	19	38	19
GCATCTCTGCTTAGGG	alt_3943_upstream	14	9	9	9	18	8	16	12	11	5
CATATCGACACGATGC	alt_3943_upstream	6	11	8	8	4	4	9	6	8	5
AGTTAAAGTACCCACT	alt_3943_upstream	70	87	73	80	93	54	75	54	67	59
GACACCCCTTCTTTGA	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TACTGGCTTAGGGGTT	ref_3943_upstream	11	2	15	11	8	10	11	11	14	9
CAGTTCCAGCCGTCGG	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TAGACCTACCTTAAGA	ref_3943_upstream	3	27	10	4	43	4	17	1	26	2
TCCGCCTTATTTCAAT	alt_3943_upstream	97	95	96	76	114	90	117	86	125	90
AGCTCTTAGTATTATT	alt_3943_upstream	16	20	23	12	22	10	29	15	18	26
AGAGAGGTAATGGTCC	alt_3943_upstream	57	62	70	63	66	66	62	46	75	54
TGCTCTGTAACGGCTC	alt_3943_upstream	64	85	118	82	82	67	82	79	103	66
TTGGCGTATTTCACAA	alt_3943_upstream	66	80	99	53	80	60	75	72	76	67
GCGCTTGCAAAAATGG	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
ACTACCTGCTGGAAAC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TCTATCGGAGGCTAAT	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
ACCACTCCCGTTCGGC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TGTGAATCAACACACC	alt_3943_upstream	4	12	9	10	8	8	5	9	4	5
CTAATAATCAGTCTAA	alt_3943_upstream	14	7	20	14	19	18	12	15	20	11
ACCGGTGATCGTTCAT	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TATGTAGGAAGTTTCT	alt_3943_upstream	31	26	31	24	27	24	23	33	26	24
TTCAATTTCACTTGTC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGTTATAATTCCT	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TATCTGTCACGTGTAT	alt_3943_upstream	52	52	56	43	44	45	49	40	73	44
TTTATCTCGGCTTACT	alt_3943_upstream	51	42	63	49	51	55	51	40	46	53
CAGGAAGCAGAGAGAA	alt_3943_upstream	74	60	87	73	76	94	77	57	91	61
GGGGTGGTATTCATAG	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
ACAATGACTAAGATTC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGATTTTATGGTT	alt_3943_upstream	24	30	19	28	32	19	28	19	21	20
ATACTACGGTTAAGGG	ref_3943_upstream	153	217	154	150	246	135	195	153	237	121
GAGGTCATGGCGCTTA	alt_3943_upstream	122	131	150	129	110	136	140	133	125	107
GGGACGTAAACTTAGC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
GCGCAGTGTAATGGCT	alt_3943_upstream	77	107	131	94	98	85	100	85	104	91
ATTCAGACGACTTTTG	alt_3943_upstream	20	30	22	16	32	22	21	27	34	20
CCACTGTTTTGGCCAT	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
ATCAACGCTATATTCC	alt_3943_upstream	32	48	36	39	42	31	59	34	48	32
TCGCTCCCGTAATGAG	alt_3943_upstream	27	39	49	39	33	36	51	36	42	37
TGTCCAGTGAAAGGAC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TTCCACCTGGATGTAT	alt_3943_upstream	11	27	25	11	14	11	17	18	15	12
ATCGCGCCGTGTGTAA	alt_3943_upstream	20	44	37	30	38	30	45	33	45	28
TATCGTGGAACATTTA	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATTGCCATGTCC	alt_3943_upstream	0	0	0	0	0	0	0	0	0	0
TATTATTGTTAACTAC	alt_3943_upstream	132	155	178	152	160	125	177	120	183	113
AATCCCAATGGCCTCG	alt_3943_upstream	2	1	4	1	6	1	0	1	0	1
TACTGGGAAGCTATGG	alt_3943_upstream	37	47	45	30	37	27	23	26	37	32
TATCCTTCCGTTGACA	ref_5793_new	36	45	54	38	55	35	45	23	49	45
GGTCAGAGCCTCCTGT	ref_5793_new	19	22	12	22	32	13	23	6	24	13
GCGTGATTTCGGGTTC	ref_5793_new	32	52	38	29	60	36	39	39	50	28
ACTTATACGCTTGGGA	ref_5793_new	81	166	122	102	156	82	150	114	174	81
TGTGCTGGTAGCGGCC	ref_5793_new	5	11	10	9	8	8	5	9	20	6
GGCTCGTTACCGTGCA	ref_5793_new	3	2	2	1	6	2	5	3	6	0
AGAACCTTCCTTAAGC	ref_5793_new	9	19	9	7	18	10	20	6	18	10
ACTTGTTTTTCGTACA	ref_5793_new	30	67	55	35	46	32	61	55	56	30
TCCGCTTAGAACAGAA	ref_5793_new	31	28	38	37	31	37	46	29	35	24
CCTAGGTGCACTCAAC	ref_5793_new	9	13	18	14	16	1	9	11	17	10
CACCACTGCAGTTCTT	ref_5793_new	23	41	27	27	28	23	34	30	40	25
AGTTAGATCCTTCACC	ref_5793_new	7	15	9	4	10	2	7	4	14	8
CGTTTATATCATGGAG	ref_5793_new	28	16	22	20	15	15	20	16	22	23
GCCGTTTTGCACGCCA	ref_5793_new	15	18	9	16	10	7	15	8	23	14
AAAATAGTGGAACGAG	ref_5793_new	70	113	108	67	103	97	105	70	119	62
CGGCGGTTATATTCCT	ref_5793_new	15	24	11	16	23	15	25	15	30	14
CAATTCACCCTCGTAT	ref_5793_new	7	10	2	4	5	2	6	5	7	7
CGGAAGGTGTGGCAGA	ref_5793_new	0	0	0	0	0	0	0	0	0	0
CCACATAGGGGAGACA	ref_5793_new	69	170	84	69	180	38	165	67	188	48
ACACGTCCACGCACCG	ref_5793_new	44	65	55	42	59	52	77	33	48	28
ATTGGGAGTCAGCCTC	ref_5793_new	34	84	62	53	74	37	68	57	74	48
CAACCTAACTTCGTGA	ref_5793_new	0	2	1	0	2	0	3	0	6	1
GGGACTTAGTATTTTG	ref_5793_new	0	0	0	0	0	0	0	0	0	0
TTATACTTAGAGATCC	ref_5793_new	21	33	35	32	30	28	45	29	39	21
TAATGCTCCTATGTTT	ref_5793_new	0	0	0	0	0	0	0	0	0	0
TGTAGGGTTTGCGTCC	ref_5793_new	9	13	22	10	25	19	22	5	21	14
CTTCCTACCTCGTGAC	ref_5793_new	5	8	3	6	2	3	6	1	6	4
AATCGCACATCCGAAT	ref_5793_new	21	32	22	15	29	15	46	14	28	11
ACGAGTTATTAAAGTG	ref_5793_new	0	0	0	0	0	0	0	0	0	0
GCTTTGCCGCCCAGAA	ref_5793_new	145	204	176	145	194	134	193	119	208	112
TCTTTGCCGCTTTCTT	ref_5793_new	15	23	5	8	19	7	15	6	23	8
CAGTTTCTTTTATCTT	ref_5793_new	0	0	0	0	0	0	0	0	0	0
TTGCTCGGAATCGACA	ref_5793_new	8	11	7	19	13	6	11	7	17	9
TTAGGTACACCACGTT	ref_5793_new	55	64	66	56	66	46	89	43	65	34
TCTTTCCCTTTTTGTG	ref_5793_new	3	6	10	6	6	2	6	8	13	4
ATTCACCGAATTACCA	ref_5793_new	26	34	17	23	34	20	41	18	30	21
CATGTTGAGGGCGAAA	ref_5793_new	9	32	10	12	35	11	16	9	7	14
GTCGCAGGAGGTAAAA	ref_5793_new	0	2	0	2	1	1	1	1	1	0
GCTGTAAACCGAATGT	ref_5793_new	8	17	7	7	5	9	14	12	14	5
GCATTACGTTAAGGGT	ref_5793_new	7	13	15	13	16	18	20	8	25	12
CTTGAGTGGTCATGGT	ref_5793_new	83	147	118	92	165	113	184	108	165	106
GATGTGTAGGGGTTCC	ref_5793_new	32	36	37	34	33	18	29	20	50	34
TGACCGAAGGAGCGCA	ref_5793_new	97	121	120	109	131	86	127	85	147	83
CTTCTTATCCGTTGTC	ref_5793_new	98	196	146	122	170	121	231	93	191	100
CCGGATCCACATCCTT	ref_5793_new	6	14	7	7	18	9	13	6	24	7
GTTCCCGTTCACTTAT	ref_5793_new	0	0	0	0	0	0	0	0	0	0
TGGTCTTCCCCAACAG	ref_5793_new	56	76	77	67	97	58	81	48	77	65
TCTATCGCTTTGCGAC	ref_5793_new	0	0	0	0	0	0	0	0	0	0
CACACCGTTTTCTTGA	ref_5793_new	23	38	14	24	35	27	23	17	35	14
CCACGTATCATACTTA	ref_5793_new	0	0	0	0	0	0	0	0	0	0
CCATGGTATCTGTAGC	ref_5793_new	2	4	0	1	3	1	2	2	3	1
AGTCCGCTGTGAGTGT	ref_5793_new	10	18	6	10	11	17	19	4	17	14
CAAACGGGATGTCACC	ref_5793_new	28	29	20	25	34	19	31	17	40	17
CATAGATCCCAAGCCA	ref_5793_new	21	17	13	12	26	8	15	12	18	13
AGCTGCTCGGTCGGTC	ref_5793_new	18	27	18	24	23	8	25	12	29	16
TACTATGAGCTGTCGC	ref_5793_new	38	55	52	35	59	24	63	27	62	27
GATACACCAGGTAACT	ref_5793_new	14	24	11	12	25	7	42	12	33	6
CTCACGACTATAAGCC	ref_5793_new	45	86	47	40	68	26	92	36	95	30
CCGTGTTAGGGTCCCT	ref_5793_new	26	61	55	64	68	48	63	37	65	30
TTTATGTATTCACACT	ref_5793_new	8	19	7	10	15	12	18	11	16	14
GTGTTCACAGCGCATG	ref_5793_new	6	13	3	3	9	5	8	4	6	1
AGGAGCTCGTTAATTG	ref_5793_new	26	47	34	26	48	27	58	23	62	36
CTCAGTACTTCCCCTT	ref_5793_new	1	17	4	3	18	4	13	1	16	2
CCGTGAGTTCTTAATA	ref_5793_new	5	21	14	1	19	7	16	3	22	5
TTCTGCATTCTTTCAG	ref_5793_new	5	13	9	18	17	9	13	7	10	9
TTTTAGCTGGGTGAGT	ref_5793_new	35	49	47	39	54	27	48	25	56	16
CTGCCGGAGCGGGGAC	ref_5793_new	27	32	36	19	47	28	22	16	32	15
GGTTGTAACTCCTTCT	ref_5793_new	43	36	38	36	51	45	46	33	61	29
TTCCTCTCAAGAAAAC	ref_5793_new	24	22	28	23	26	22	31	17	20	14
TTCGGAGTTTTTACGC	ref_5793_new	58	89	80	57	76	62	104	56	84	49
ACGTGTTAGACATCAG	ref_5793_new	2	6	19	2	13	4	6	5	8	7
GTCACAAGTTGTTATT	ref_5793_new	34	48	42	37	58	46	65	44	50	31
TTTATGAGGGTCAATA	alt_5755_new	9	9	17	11	13	2	26	10	8	12
GTGCCTCGGCGGGAGT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TATTTTACTTGCCCGA	alt_5755_new	0	0	0	0	0	0	0	0	0	0
GGAGGGCCGTCTGACT	alt_5755_new	30	63	55	36	70	42	67	43	59	31
TATCTGGACGGTAATT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
GGCAATAGCCATTTCG	alt_5755_new	41	73	49	59	72	42	83	30	80	61
TGTTGAGCTAGTCATT	alt_5755_new	17	35	18	15	38	11	31	14	39	13
TGTGTTGTTCTCTCCT	alt_5755_new	40	38	51	38	60	28	33	33	65	25
TGTTTTTTAGTAGTGT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
AATCCAGAGTCTCTGA	alt_5755_new	4	18	10	8	17	7	12	7	17	8
TGACCAAGGGCGTATT	alt_5755_new	10	16	22	13	17	18	22	14	22	11
TCGCAAGCGGGGCCCA	alt_5755_new	0	0	0	0	0	0	0	0	0	0
AGTAGTGGATTCTAAT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TCGGTTCGTACCCCGA	alt_5755_new	2	0	1	0	5	1	1	0	1	1
TACTTTATACATCGAT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
GTATCTGACAAGTAGT	alt_5755_new	34	44	35	33	63	33	55	27	54	28
CTCTGTCCAGGACGTT	alt_5755_new	17	29	21	22	33	18	32	21	30	27
TTCTAAATAATAACCG	alt_5755_new	4	5	9	4	3	3	8	1	5	2
GAGAATATCTTTTTTT	alt_5755_new	35	48	46	38	53	44	55	37	56	39
TACGACGTTTCGCGGC	alt_5755_new	0	0	0	0	0	0	0	0	0	0
GCTAGATGTCCGTATG	alt_5755_new	60	102	75	68	120	59	122	66	121	60
CTGTTACTGTAGACGG	alt_5755_new	18	40	25	27	26	19	30	23	42	17
GGACCGACACTAATCT	alt_5755_new	35	26	36	40	44	33	48	19	34	26
TTGTTAGGCTCCGCAT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
CTGTTTGCGGATCCGG	alt_5755_new	81	128	93	89	118	72	128	98	131	62
GGGCCTCATTGCTGTC	alt_5755_new	37	41	29	26	56	29	65	32	52	35
TTTTTCTATTGAGTAT	alt_5755_new	8	8	9	8	14	7	12	13	14	10
TTTGTAAGAGGCTATA	alt_5755_new	0	0	0	0	0	0	0	0	0	0
CTCTCACACAGGCATT	alt_5755_new	14	9	4	4	8	5	12	4	6	10
GGATCCTTCCGCAGTG	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TTTAGACATAACGCTG	alt_5755_new	18	35	33	25	47	16	51	24	55	17
TCACTACGGAGGAGGA	alt_5755_new	3	5	4	1	5	6	4	5	11	5
CGATTCCTTCGCGAGG	alt_5755_new	5	11	8	6	9	7	13	4	12	1
GTTTTAGTTCTGCGAT	alt_5755_new	15	23	24	16	22	14	24	14	11	12
GCGGGTTGATGCCCCC	alt_5755_new	0	0	0	0	0	0	0	0	0	0
CACATCTAATATCTGT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TGGCACCAGCCCGTGT	alt_5755_new	6	1	12	3	10	9	9	5	8	3
CTTGGAAGTCTCATTG	alt_5755_new	0	0	0	0	0	0	1	0	0	0
GTGCTTCTCTCACCGG	alt_5755_new	0	0	0	0	0	0	0	0	0	0
ATAAACTGTCTTCGGC	alt_5755_new	131	210	133	144	165	113	194	113	186	108
GTACCGGCCAGGAGAT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TGAAAGATTTGTGTTT	alt_5755_new	8	9	10	4	14	7	18	8	10	5
AAAACAACTACAGCAG	alt_5755_new	0	0	0	0	0	0	0	0	0	0
GACCATCTAGACTGTT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TCCTTGGACATCAAAT	alt_5755_new	46	96	54	45	75	39	82	29	78	40
TATTGAGTGACCATAT	alt_5755_new	31	61	44	28	51	35	56	25	66	24
ATTATCCACAGGGGTT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TTCTTAGTAATCGTGA	alt_5755_new	23	29	34	21	26	26	32	24	59	19
TAAAGGTCCTTCGCTT	alt_5755_new	17	34	28	17	46	16	45	21	40	22
AGCTCAGCACCCCACT	alt_5755_new	7	14	16	12	24	9	23	9	29	13
CCCTTGTGGGACATTA	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TTCTTTAGGTAGGTCA	alt_5755_new	15	11	13	15	18	22	31	8	23	14
ATGCCTGCTTTTCTCG	alt_5755_new	25	38	24	25	43	22	59	23	43	17
GAAATGTCTTCCCTAC	alt_5755_new	0	2	0	5	1	1	3	1	6	0
AAACTTGGGAGGATAG	alt_5755_new	4	12	7	8	2	2	8	1	7	3
TTCCTTACTACGAGCA	alt_5755_new	5	1	1	4	8	3	4	3	4	2
CGTGTGATTAGCTGTA	alt_5755_new	14	31	14	12	19	12	21	13	22	8
GTGCTCTATTTCTTGT	alt_5755_new	12	28	22	17	23	23	28	15	20	13
ACATATACGCATGATT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
CCTAGGCTTAGTCTTA	alt_5755_new	1	17	7	8	8	4	13	4	15	8
GGTAGATCCTTATCCT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TCTGCTCGGCCCACAC	alt_5755_new	0	0	0	0	0	0	0	0	0	0
CGGTGGCCATGGTGCT	alt_5755_new	44	50	49	55	64	52	78	33	74	57
GTGCAATCCTCCTGGT	alt_5755_new	36	57	37	42	55	42	71	31	53	38
GCTACGACCATTGCTA	alt_5755_new	7	24	12	8	14	9	16	23	24	7
CACTGTCGTCTCAATG	alt_5755_new	8	15	25	16	21	10	22	8	14	5
CACAAAATTTAGCTCT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
TTGCTCTTCTACTGCA	alt_5755_new	32	30	42	23	27	23	25	16	30	29
ACATATAGGGTACGGG	alt_5755_new	117	127	133	111	174	119	185	100	185	113
TGAAGTCGCGTTTGTG	alt_5755_new	3	6	8	10	20	7	15	6	13	4
TAGATAGGGTGGTTTT	alt_5755_new	0	0	0	0	0	0	0	0	0	0
CCAGTCTGGTGGGGGT	alt_5755_new	67	90	90	64	110	68	137	59	113	64
ACCTCCGGAGTGGAAT	alt_5755_new	31	63	46	35	63	33	58	29	65	36
GTTTAAGAGGTCAGGG	alt_5755_new	0	0	0	0	0	0	0	0	0	0
AGAATTGTAAGACATT	alt_5755_new	4	5	3	2	5	3	7	7	4	6
TATAGGTGATTACGCA	alt_5755_new	5	7	13	7	2	4	4	4	4	4
CGTTCATCCAGAGCTA	ref_5392_upstream	61	81	81	56	98	40	67	62	80	39
ACGCCAGAGCGCTCAT	ref_5392_upstream	10	26	14	12	19	15	14	21	13	16
TCTCAGCAGGGAAGAT	alt_5392_upstream	23	35	51	28	27	33	38	29	41	30
GTTGCCTCACCTAAGT	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTGTTTCTGAAGG	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTAGGCGTTATTG	ref_5392_upstream	16	29	26	25	24	20	30	15	24	23
TGGCTCCCATCCTTAG	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCTGCTTAAGCCG	ref_5392_upstream	3	4	10	2	4	3	6	6	2	2
ACTATACTTGGTATCG	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAGTAGCCCCACA	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
GCATGTCTGCAGTCTT	ref_5392_upstream	12	9	11	8	16	9	12	8	13	9
TGTGATGACCCTTGTC	ref_5392_upstream	25	47	20	15	22	18	26	21	21	15
ACCGGAGCCGGAAGCG	ref_5392_upstream	15	39	25	23	22	17	53	14	32	15
TGTGAGCATGCACGGC	ref_5392_upstream	49	61	43	61	55	48	61	49	67	30
TCTGACTCTGTAATTG	ref_5392_upstream	46	65	55	35	63	27	61	47	76	32
AGCTTGCATGATGTCG	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
CTCCCGGTTAAAACAT	ref_5392_upstream	1	6	2	1	6	2	2	1	3	5
GCAGAAACATGTAAAG	ref_5392_upstream	19	46	29	32	42	16	59	29	54	18
CCTGTTAATGAGCATA	ref_5392_upstream	20	21	21	20	21	13	20	14	16	16
GAGGTGCTGTTTACCG	ref_5392_upstream	121	155	124	78	128	116	158	125	138	103
ATCTTATTTTCATCTA	ref_5392_upstream	115	120	128	75	118	115	117	99	122	107
TTGGGTTAAACGTGGC	ref_5392_upstream	117	117	93	85	90	73	96	79	104	81
TCCGTGCCTAACTTTA	ref_5392_upstream	26	43	42	27	36	26	31	32	37	22
AGTGGTGTTAGGTCAC	ref_5392_upstream	26	31	33	39	40	24	51	26	38	31
GTGAAGAGATAAGTAC	ref_5392_upstream	14	32	31	22	32	25	29	16	37	13
AAGCGTGGTTCATTTA	ref_5392_upstream	52	59	55	40	63	47	66	44	57	38
GGGGTTTGGATTCGGG	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
GGTCACATGGGTCGAG	ref_5392_upstream	4	8	14	9	8	4	8	9	5	9
TACAGCCCGGGACAGT	ref_5392_upstream	93	143	93	103	161	70	157	70	148	67
ATCATCACATAGGAGC	ref_5392_upstream	3	8	5	4	10	12	4	10	8	7
TCACGCTTTGGGTCCC	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGTTCAAGTTTGG	ref_5392_upstream	108	191	163	149	205	131	224	147	196	132
TAATGAAGTTCGCGAT	ref_5392_upstream	64	55	66	51	53	46	57	43	54	53
AGCAGAGGCTCGTTGA	ref_5392_upstream	3	5	1	0	6	3	6	5	2	4
AGTAAGGCTGACATTC	alt_5392_upstream	71	97	92	87	76	69	85	76	96	69
ATGACCATACTCTCAA	ref_5392_upstream	14	32	29	23	20	30	30	29	24	24
CTGTACGTCATGCGAG	ref_5392_upstream	4	4	4	2	3	2	4	1	7	3
CATGTCGATATGTCCA	ref_5392_upstream	11	10	3	13	20	15	16	9	18	4
AGGGTCTACATTCCCC	ref_5392_upstream	8	14	17	9	10	3	17	13	20	6
AAACTATTTCTGTTGT	ref_5392_upstream	45	53	41	42	46	54	47	45	48	43
GGGCCATCGGTGATGG	ref_5392_upstream	61	85	78	85	85	68	92	61	92	67
CGGTCAGAGCTATTTG	ref_5392_upstream	81	105	99	81	97	79	97	78	110	72
TAGCGGCCTTTGTCTT	ref_5392_upstream	9	26	16	12	15	15	25	14	34	15
TGATTCGGTCCTCTTT	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGAATGACTATTA	ref_5392_upstream	14	17	18	13	20	16	20	14	20	14
TTGAAGCCGCCTCGTT	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
GCGCAAGTACATAAGA	ref_5392_upstream	25	29	18	26	40	22	37	19	48	12
CAATCGAGTTAGCGGC	ref_5392_upstream	25	43	60	41	59	56	55	47	64	32
AATTCCTTCTCGACAC	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCCGTTGCCGACA	ref_5392_upstream	5	1	7	2	15	0	4	3	3	4
TAGGAGCGGTAATAAG	ref_5392_upstream	25	38	19	19	32	21	39	24	44	23
AGCAGGAAATCTCCGA	ref_5392_upstream	12	37	28	39	21	13	20	13	31	19
AGTGTTCAACGACTGT	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
GTCAGCGTCTTTATTC	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGGCACGTCTCGG	ref_5392_upstream	30	28	33	23	41	21	44	30	28	25
CTATTCGTCTGATCCG	ref_5392_upstream	33	49	45	44	63	44	43	44	57	32
TAGTTTCAGATTCTCA	ref_5392_upstream	0	0	0	0	0	0	0	0	0	0
GCGGTGTAGTGCTGCT	ref_5392_upstream	13	17	15	12	15	24	16	12	18	6
GGTGCAAGATTCTGTG	ref_5392_upstream	67	151	64	64	158	71	167	66	149	63
GTAACCTGGACTACTA	ref_5392_upstream	33	46	51	29	49	29	55	36	50	20
TGTAGGAATATCGGCA	ref_5392_upstream	3	0	0	0	1	0	1	1	0	1
TGGTTTGGTTGGTGTC	ref_5392_upstream	27	23	29	36	35	13	24	19	38	15
AGTCAGTTAATTTATG	alt_5802_new	37	46	37	36	55	32	58	34	64	35
TTATGTTTTAACTTGG	alt_5802_new	73	128	115	81	128	76	118	84	144	81
CGGTGTACAGCACACA	alt_5802_new	6	18	5	26	27	10	28	16	19	12
CGCGCTCGTTTGAATC	alt_5802_new	26	33	31	24	46	21	43	21	30	18
TGCGGTTGGCGTCATC	alt_5802_new	63	73	66	61	87	66	69	55	90	48
TCGTAGTTGAACGCTG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TGTCCTCAAAGCACTG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
ATCCCTCAGGTGCGGT	alt_5802_new	20	76	26	19	57	17	54	15	57	16
GCGTTAATATTGGAAT	alt_5802_new	15	20	27	15	30	10	15	13	33	6
GTGTATGGAATATCCT	alt_5802_new	3	4	10	11	6	5	8	4	5	7
ACGCGGACCGTCTAGG	alt_5802_new	4	10	1	2	11	6	10	0	7	0
ACCTTTGGTGTAATCG	alt_5802_new	179	253	186	162	257	155	269	171	267	134
TTCTAATGTGGTATGA	alt_5802_new	8	14	15	4	17	8	18	5	12	9
TCTCGTTGTATGAGTT	alt_5802_new	5	7	1	3	5	1	1	1	2	1
ACGAGGATGGCAAATG	alt_5802_new	43	50	48	52	51	40	47	42	66	30
CCGTCTTCCTCGCACT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TGCTTAGCTAGATCTT	alt_5802_new	18	30	27	19	22	25	26	20	30	12
TCATTTTGGAGCTGTG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
CCCTGGGAAGGTAGCA	alt_5802_new	45	131	51	44	142	51	124	46	165	41
ATGTCTTGTGATCTAG	alt_5802_new	5	8	7	10	9	1	12	9	9	4
CACTGTATCTTATGGG	alt_5802_new	89	249	121	110	223	108	251	113	242	102
TTTCTCGTATGTTAAA	alt_5802_new	37	74	72	52	86	49	85	54	90	46
CTTGCCACCGACCTTG	alt_5802_new	8	18	16	4	23	10	20	7	39	10
GCGTCGGGCTCAGGCA	alt_5802_new	17	10	18	9	17	14	23	8	24	12
GCTAATGTCATTGTAT	alt_5802_new	43	72	41	47	85	51	76	55	93	52
AGCTGTACCGAACGAT	alt_5802_new	23	22	15	12	20	28	29	14	14	5
AGCAGTAGTCGGTCGC	alt_5802_new	39	62	34	40	64	34	50	39	55	30
GCTCAGTTAAAATATC	alt_5802_new	0	0	0	0	0	0	0	0	0	0
ACACTTTGGAATACAG	alt_5802_new	16	9	13	17	20	11	20	10	16	19
GACGGGCTCATTAATT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GGTGTGGATTACCGTA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GTTCTAGCCCCCGCCC	alt_5802_new	12	30	26	17	35	19	38	11	42	18
CAATCGCGACGTTAGA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AACAAGCTCACTATAC	alt_5802_new	89	190	133	115	161	99	203	108	193	105
CCCGTTTACATCTTCG	alt_5802_new	2	5	5	3	3	2	0	1	1	2
CATAGAGGGTGTGTTA	alt_5802_new	10	5	4	9	8	2	8	6	7	4
TCTCGTTCGTTGCGCT	alt_5802_new	31	51	29	32	60	30	56	17	56	22
TATACAGGCAATTTAA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AGCTAATCTGTCTGGC	alt_5802_new	28	34	28	22	55	33	42	27	45	24
CTTAAGTCTCACCTTC	alt_5802_new	11	18	3	8	12	9	18	5	13	3
TCAATTAGGTAAATGT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
ACGTATCACGGCCCGG	alt_5802_new	47	61	57	58	77	55	67	47	81	43
AAAGATGGAAGCCCGA	alt_5802_new	58	93	62	46	70	53	91	54	87	50
GATTATATCGTTCTTC	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GGTGCTGTGTCGATGT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GTTCCTACTGCAAAAT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AATTATCCTCGCCGGC	alt_5802_new	10	22	21	14	28	13	25	16	27	14
TTTTACCCTGCCAGTT	alt_5802_new	16	44	29	34	41	24	42	18	41	22
GCGTGCTCTTTATTCT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GTTCGTTTCCGAAGCG	alt_5802_new	56	73	49	51	87	50	61	52	80	44
TAGTATAAATTTAAAC	alt_5802_new	40	50	40	41	56	35	57	41	71	36
GAAATGACGTACGTCT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TACCTCGACCTGCCAG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
CCCTTGTATACCAAAG	alt_5802_new	2	1	3	1	2	0	4	0	3	0
TAATACTGACTCTGTT	alt_5802_new	21	28	22	24	18	20	32	17	25	11
GTGCTTAAACGCGCCA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
CCCGGTTAGCGCTCTC	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TCCTCACCGTAGCCGA	alt_5802_new	64	99	67	72	89	49	88	37	97	45
TGGTCATCGCTGCTGG	alt_5802_new	8	12	11	4	13	10	9	9	20	11
CTCGCGGCTCCATGCG	alt_5802_new	29	101	71	49	77	59	87	40	81	45
GTCATCGTACCGCGTA	alt_5802_new	61	80	77	55	106	68	105	53	102	40
TACAGGCTTACATCAG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GGTTCTACGATTGTCA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AGTTGCTTACTGGCAT	alt_5802_new	35	47	41	23	54	40	50	22	43	34
TCTTTTAGGAATCCTG	alt_5802_new	58	77	63	53	66	64	67	53	76	40
AGTCAGCTCGTTCTCC	alt_5802_new	32	35	24	22	34	14	43	15	24	19
CTAGGAAGTCTGCATT	alt_5802_new	84	138	89	72	132	83	159	71	156	54
TCATGCCCCGTGCATC	alt_5802_new	55	50	76	69	80	52	92	48	77	55
GGAAGGACATATTTAG	alt_5802_new	12	10	9	4	20	8	7	10	18	11
GATGTTTGATCGGATT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AGTTGGCTTTCACGTG	alt_5802_new	20	24	33	26	27	27	30	17	27	16
AACGAACGTAGTCCTC	alt_5802_new	7	6	0	10	9	2	2	2	9	6
GTCCTTTTCCTGACGC	alt_5802_new	65	76	73	55	71	70	68	66	77	52
CTACGCCTTAGGATGC	alt_5802_new	15	15	14	10	18	15	21	16	9	9
TTCCGTTTCGTCATTA	alt_5802_new	76	67	76	66	98	59	82	65	86	68
TGACTAAGTGTCCTGC	alt_5802_new	7	17	15	7	17	1	13	10	18	12
TGTCCCGATAACAGGT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AATGTCGTGTAGCAAG	alt_5802_new	8	11	8	2	10	6	13	4	12	7
CTGTGACGTACAGATC	alt_5802_new	0	0	0	0	0	0	0	0	0	0
CCGTTAGCTCACCCTC	alt_5802_new	33	43	31	22	28	17	34	23	41	19
CCATCCGCTTATGTCG	alt_5802_new	16	22	23	20	38	9	43	22	41	17
CAACGCTGTCCCAATT	alt_5802_new	14	24	23	23	31	24	36	18	38	19
TTTTAACTTGTTAACT	alt_5802_new	0	6	5	0	10	5	3	0	6	3
TCGTCTTTTTATTCCG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TGCCTGGTCGGGTCTC	alt_5802_new	0	11	2	0	5	1	5	0	15	1
CACGCATTTATGTAAT	alt_5802_new	10	15	9	6	17	2	12	7	18	8
TGATTAGGACTAATTA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
CCCTCGTTGAAACAAC	alt_5802_new	15	35	20	22	33	21	37	23	31	20
TTTACTGGCTTGCTAT	alt_5802_new	19	21	22	13	22	10	28	14	22	14
ATTATTCCTTCTTAGA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TAATTGTGCTCGCTTT	alt_5802_new	52	98	72	52	92	63	81	43	98	55
ATATGTCACGCACTTC	alt_5802_new	2	5	2	10	6	3	4	7	2	4
GTGCACAATGGGACGG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TCGTCTCAATTTGTTT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
ATTACACGGTTCAAGT	alt_5802_new	20	17	26	21	26	9	32	19	33	12
GTAGGCTTGCTGCGCT	alt_5802_new	1	2	2	2	7	0	4	1	5	1
ATTTGATGGTTGTATG	alt_5802_new	12	22	14	14	15	21	26	13	19	8
TTACTGGAAATGCCTC	alt_5802_new	22	24	21	20	34	15	24	18	30	22
CTTTGTCGTTGTGTCC	alt_5802_new	47	72	47	30	48	39	73	47	68	36
ATGACCACTATAATTT	alt_5802_new	11	20	8	14	15	8	20	9	26	15
CGATTATGCCCCGCTT	alt_5802_new	4	11	11	8	17	2	9	6	15	6
TTGACATCTAGATAGG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
CTATTGTGCCTTCTCT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TTCGCATTAGTGAGCC	alt_5802_new	11	39	25	18	36	19	34	21	31	12
GTATAGCCACAATTTC	alt_5802_new	0	0	0	0	0	0	0	0	0	0
ACGTCTGGTTACCTCG	alt_5802_new	27	37	19	11	22	16	27	18	29	12
TCTAATTTATCCTCAG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TTCTATCTGCTTACCA	alt_5802_new	4	5	11	5	12	3	9	6	15	4
GGAGCGGTTTCCAGGT	alt_5802_new	75	121	96	80	109	67	124	76	147	60
GTATCATTAGTAATGT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TTCTAAGTTATGTCCT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AAGCTTACGCAAGTCG	alt_5802_new	21	39	21	24	40	20	38	20	34	25
GGATATTGTCCATGAC	alt_5802_new	32	50	50	38	30	48	54	35	62	23
CCTTTGGGATGGAAAG	alt_5802_new	3	8	7	4	5	17	10	7	5	7
CTGATCACGGTTCGGA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
TTATGTGGTCGTATAC	alt_5802_new	14	34	11	16	27	11	28	18	18	8
TGCCAGCTTTTCATGG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
CTTTGACGGTCGATAC	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GCAGTATGCGCCTGGG	alt_5802_new	62	87	61	56	81	71	98	46	92	56
GTCACGTTGGTCAGAA	alt_5802_new	4	3	8	2	2	1	11	3	8	0
ATTTAGCGCACCGTAT	alt_5802_new	28	37	43	22	31	24	43	25	41	25
GATACTCTGGGCACTT	alt_5802_new	15	34	21	12	12	15	19	16	22	18
CATTGCAGCTAATCGT	alt_5802_new	35	56	47	29	62	38	70	35	63	26
ACCTTGTGCCGTAGAC	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GTCGCAACTTGGCTCG	alt_5802_new	57	82	68	45	76	49	90	67	83	59
ATTCAACTCCATTGGG	alt_5802_new	13	29	13	14	28	9	12	19	17	19
GAGCTTTCTATACAAG	alt_5802_new	22	23	24	12	15	23	18	12	19	16
GTCTAGTTAAAGCCTG	alt_5802_new	0	0	0	0	0	0	0	0	0	0
ACTCTCAACCACTAAT	alt_5802_new	2	9	5	4	7	2	3	5	5	3
TGCAGTTAAAGGCACA	alt_5802_new	25	34	28	21	38	15	35	29	32	22
TCGTGTTTGCCCGAGC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ATCGCATACATGGTAG	alt_5802_new	18	46	34	29	36	29	39	38	35	32
CGTTGCCGGACCGCCT	alt_5802_new	0	2	2	1	1	2	3	0	0	0
GTTACCATTCCGCAAC	alt_5802_new	23	33	33	25	34	21	34	21	34	22
TCGGTGCGCCATTGTG	alt_5802_new	6	5	5	6	8	6	6	5	9	6
AACCTTGTGGAGCCGA	alt_5802_new	24	16	21	19	34	10	34	17	39	15
CAGGCCCGTAATTGAT	alt_5802_new	12	25	11	17	23	21	20	15	29	16
GCATTCCACTACGCTT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AACCTTCTGCTACGAT	alt_5802_new	23	59	29	43	48	26	45	18	46	20
TCGTCAAGCGTCTTTT	alt_5802_new	6	10	8	7	16	10	22	8	16	10
GACACTAGCGGTTGTA	alt_5802_new	15	28	12	17	22	10	15	10	27	14
AAAGTTTTTTCGAATC	alt_5802_new	62	115	111	78	111	66	125	68	123	67
GTCAAAGACAGCACTT	alt_5802_new	14	24	15	13	30	13	30	16	28	11
CCCTTATAACCATATT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GCAGATGGGTGTTCCT	alt_5802_new	9	15	7	15	10	6	7	7	10	6
CGATCCGCGTGCAGAA	alt_5802_new	105	156	113	98	126	70	150	88	158	83
AGCACTATTAGATATC	alt_5802_new	18	20	10	18	25	15	20	10	18	10
GGCGAAGGGCCAAGTT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
GTACCGCGCAATTCTA	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AAGACCGCGATTCATA	alt_5802_new	3	4	1	2	3	1	4	2	3	5
ATTCGTTACCACGCAT	alt_5802_new	0	0	0	0	0	0	0	0	0	0
AGCAAACCGCCGCCGA	ref_5637_new	33	66	73	54	56	39	63	46	74	40
TTCCACCACTGTCTCT	ref_5637_new	11	12	18	11	14	11	6	10	18	14
GTGTCATTGCGGCAGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
GGACCCAGCGCTACTG	ref_5637_new	20	8	18	8	15	16	16	14	22	19
CGGCGGTTGCATGGCC	ref_5637_new	10	20	19	17	13	17	8	16	17	9
TATCCGGCCCTGTCAA	ref_5637_new	24	18	21	13	26	29	33	17	21	16
TTTCGAGCGTCCTGTC	ref_5637_new	16	23	26	22	34	18	38	20	37	27
GACGCAGAGTAACTTT	ref_5637_new	26	27	21	19	22	18	26	17	23	14
GCCTGTTTCATCTCTT	ref_5637_new	4	5	1	5	1	4	6	2	7	0
CACGAACTGCAGCCTG	ref_5637_new	19	14	13	11	28	15	18	19	23	13
GCATTCATACCTGACG	ref_5637_new	0	0	0	0	0	0	0	0	0	0
CCATATGCCCGGCGCA	ref_5637_new	24	47	20	17	36	13	35	22	32	19
ACCATGTGTCAGGGAA	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TAACGATCCTTTATTC	ref_5637_new	26	21	23	24	26	21	26	24	15	22
ACTTGCACTGCCGTGT	ref_5637_new	11	11	11	6	25	16	17	8	17	12
CCTACTGGGTACGGAT	ref_5637_new	24	24	34	24	38	32	37	25	36	18
TTGCCCAGAGTGAGCG	ref_5637_new	30	35	24	25	30	20	25	20	21	26
GTCAACTCCGCAGGCG	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TTCGAGTTTGTAGCGG	ref_5637_new	5	14	8	8	13	13	21	7	15	8
AGCAGAATTTCACCGT	ref_5637_new	70	80	68	72	86	37	110	83	106	66
GCTACTTCGTATGTGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TCCAGTACCGCTATCT	ref_5637_new	14	31	32	31	43	22	41	25	28	20
ACCATTCCTTGAACAA	ref_5637_new	48	106	85	61	144	56	132	57	129	52
GTACGAGAGTGACACC	ref_5637_new	25	40	31	27	43	21	45	20	54	21
ACATTGTACTCCGTGA	ref_5637_new	23	41	43	31	54	32	48	25	59	26
AGCTTCCGACACTTGA	ref_5637_new	13	6	6	10	17	8	5	6	8	6
TCTTTGCGCGCAAGTG	ref_5637_new	117	184	139	91	140	77	171	85	162	72
TTTACTACTCTACTCA	ref_5637_new	10	33	30	20	27	16	40	14	47	8
GCGAGTTCTGCGGTGG	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TTCGGCTGTGGAGGTT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TCTATCGTGTGGCCGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
CCTGGCCTTTTATTAT	ref_5637_new	5	3	1	5	5	1	7	1	4	5
TCCCCTCGCTCACTTC	ref_5637_new	0	0	0	0	0	0	0	0	0	0
CTTATTGCTCTCTGAA	ref_5637_new	46	70	62	65	83	43	80	43	78	51
GTAAAATGCATCTAGC	ref_5637_new	9	18	18	10	17	19	15	13	22	10
GTAGTTCATGCACGAT	ref_5637_new	1	3	1	2	3	1	1	3	1	1
ACGCTAAGTCTATCGC	ref_5637_new	31	61	34	34	67	28	84	19	72	31
TCGTTATTGTATAGTC	ref_5637_new	27	48	33	27	40	36	44	28	46	25
AGTTGTCCGCCATAAC	ref_5637_new	0	0	0	0	0	0	0	0	0	0
CATTTAGGCTAACTTC	ref_5637_new	16	24	26	18	24	22	30	16	22	23
AAGAAGGCCGCTATTG	ref_5637_new	43	55	44	53	58	45	51	37	61	42
TGGTGCAGGGTTTTCA	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TATTAAATAAACGTTT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
AGTTTAAAGACGCCCA	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TAGGTGTGATCCTACA	ref_5637_new	43	52	32	38	49	32	55	25	55	23
TGTTCCGTATCTTACC	ref_5637_new	50	126	84	62	116	51	105	64	129	54
CTCTTTCCAGCTAATG	ref_5637_new	27	45	41	35	51	27	43	20	46	32
CTCGGTCCGATACGTG	ref_5637_new	6	16	9	5	13	4	21	12	16	5
CTAACGCAAAGGTAGC	ref_5637_new	27	46	37	27	51	26	51	20	47	22
AGGCGTGATCTGATGA	ref_5637_new	7	14	16	17	15	22	12	8	8	6
GTCTGGATTTTCTGCT	ref_5637_new	22	37	30	29	40	25	33	21	43	22
TTTACAGCTTACCGGA	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TGTCCCTTTCGCTTTT	ref_5637_new	38	68	71	46	56	57	77	42	84	42
TTAATGCAATGGTCCA	ref_5637_new	13	9	6	6	12	5	11	4	11	4
GGTCACTTATCCGGGT	ref_5637_new	12	24	19	19	14	10	38	25	26	19
GGTTAAACTCCGGATC	ref_5637_new	4	10	9	8	8	1	10	6	10	8
GCGGTTGCGTATCTGT	ref_5637_new	16	13	12	13	27	14	20	15	19	12
TGATGCCACTAAACCG	ref_5637_new	9	6	5	7	7	7	9	9	13	9
TCAATCTGGAGCTTAT	ref_5637_new	29	40	26	28	22	36	35	28	50	17
GAGGTGTCGAATCGTC	ref_5637_new	12	19	20	16	24	15	19	15	21	14
CGCCGTTCCCTGTTGC	ref_5637_new	2	12	3	5	13	6	11	9	7	4
GGCTGGGGAAGACTAA	ref_5637_new	13	26	26	14	14	20	33	17	26	29
GTGGTACAGGAAAAAA	ref_5637_new	4	4	1	0	5	5	8	0	2	1
CGTATGAGGCACCGCT	ref_5637_new	24	37	37	35	48	20	42	25	45	29
TGATCCGGGATCGAAC	ref_5637_new	5	17	7	11	10	3	9	6	6	6
CAAGTCCTCCGCGCAG	ref_5637_new	54	122	63	61	139	42	121	62	103	50
GTGTGGATCGCCGTAC	ref_5637_new	0	0	0	0	0	0	0	0	0	0
AGTGCGCTCGCTGGGG	ref_5637_new	17	5	13	9	10	9	14	9	9	6
GATAGGGTTCTGCGAT	ref_5637_new	46	79	61	35	50	70	83	47	85	44
GAAGTCAACTGGATAT	ref_5637_new	70	95	66	41	76	44	96	50	77	43
ATTCGTCCACTGTCAC	ref_5637_new	0	0	0	0	0	0	0	0	0	0
ACCCCCGCCAGTGTGT	ref_5637_new	10	27	7	16	46	7	52	5	38	7
AGTTATCCACCTCCCA	ref_5637_new	36	34	34	19	24	21	47	24	32	26
GTGCCGATTGTCGCCA	ref_5637_new	13	20	18	9	16	11	21	7	26	5
CATGTTCAAGAATATT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
ATCTTACCACTTGCAC	ref_5637_new	7	1	4	5	1	2	7	2	5	1
CCGTCTTATGCATTGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
GTCATCATATGCTAGC	ref_5637_new	0	0	0	0	0	0	0	0	0	0
CCCTTGGGGGAGATAC	ref_5637_new	7	7	11	6	10	10	7	6	20	4
GTGGTGACCTTACGCG	ref_5637_new	6	8	8	7	6	5	5	1	14	9
TCCACACTATGATACC	ref_5637_new	27	41	34	29	44	35	41	19	57	18
CTTGCGCAGGGTAGGT	ref_5637_new	27	50	19	32	25	16	44	14	25	20
GGAGTCTCAATTAAGG	ref_5637_new	27	33	22	26	31	39	48	20	38	19
GGGATCTTTTTCACTT	ref_5637_new	11	15	16	14	15	10	12	12	9	14
TATCTCCTGAGTTCGT	ref_5637_new	23	22	21	23	33	15	24	19	36	22
AGTTCTAGGTGAAATC	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TATCGTATCCTTTTGT	ref_5637_new	21	11	14	11	22	14	26	16	13	13
CACCCTTAGTAAGTTT	ref_5637_new	29	45	40	37	63	30	48	27	57	19
GAGCACAGGCAGTGTA	ref_5637_new	35	42	23	26	46	38	66	25	53	32
GTCCCCGATCCAACTT	ref_5637_new	18	37	32	21	44	8	28	15	23	16
ATATTTTGTCCAGCTT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
GCAGAGTTCAACGAAA	ref_5637_new	12	18	11	8	17	11	16	5	25	13
CATATTCTATCTTCTC	ref_5637_new	13	18	24	11	11	19	20	11	18	15
CGTCCATATACGATTT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TCTACTCCGTAACAGC	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TTGCAAAATCATTCTT	ref_5637_new	10	23	4	11	21	9	12	7	22	10
AGTCACTTATCCGGGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TTTTGGGTTCCCAGTT	ref_5637_new	12	20	21	12	16	16	12	12	19	8
GGTTTGCCAGAAGCGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TGAATTTCATAAATAT	ref_5637_new	12	12	8	7	8	4	6	5	12	10
TTGCTCGAGTTGTCTC	ref_5637_new	31	56	36	19	38	39	44	23	54	29
CACTGTTACTAGGGGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TTGGCGTGCCCAGCCT	ref_5637_new	7	22	26	22	28	9	18	16	19	14
TTATCCGCACTCTCCA	ref_5637_new	0	0	0	0	0	0	0	0	0	0
CATCTGTTATCCCGGT	ref_5637_new	0	0	0	0	0	0	0	0	0	0
TCATGTAGCTAGTGCA	ref_5637_new	13	21	17	13	11	8	22	17	23	12
ATTTCCTCTTTATAGT	alt_5736_new	141	42	158	135	40	114	40	104	48	97
ATTCCTTACAGATAAC	alt_5736_new	120	26	130	114	18	111	38	90	39	102
CACTGGGACGTTTCGG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GATGACTGCCTTGCTA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AGCGGTTAACCTGCTA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CCCCCTGCGTGGTTGA	alt_5736_new	51	115	76	63	105	55	95	55	112	51
GAACTACTTTCTACAT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TTTGTGTTTCTATTCT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AATATGCCTATTGACC	alt_5736_new	508	187	622	619	193	528	183	507	162	427
TACATTCATTAACCTC	alt_5736_new	57	17	48	53	16	54	17	52	10	41
TTCAGTTACTGCCCCC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GCTCTTGATTGAATGG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
ACGCCGTACACCCGCT	alt_5736_new	16	17	19	26	19	15	14	14	20	10
TGGCATCATACCCCGG	alt_5736_new	54	17	79	67	15	55	25	57	18	54
AACAGTGCTCGAAAAC	alt_5736_new	43	10	37	50	12	36	12	35	15	28
GTTCCGGCATTTTCCG	alt_5736_new	208	54	237	174	74	177	62	207	60	161
CACGTTCTATATTGCG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AACGAGGTGCCGGGCC	alt_5736_new	86	18	100	95	33	81	27	93	31	48
TATCAATGAAGCATGC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CTACAGTGACTCTCCT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GTTCTCACGTAATTAG	alt_5736_new	68	26	66	78	11	71	23	64	21	60
TTAAGCGGGGCCGTAT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AGTTCGCTTGTTCACG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GATTCCCGTCTCGGGT	alt_5736_new	73	32	77	72	31	70	35	74	16	46
TACGTCGAATGCAGGT	alt_5736_new	115	40	165	118	41	114	38	120	49	106
ATTGTCGCGATTCATT	alt_5736_new	40	10	37	27	7	16	9	22	7	16
CGGTGCTGTGTGTCGA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GGTGTTGTATTCGCCT	alt_5736_new	148	37	148	154	55	107	52	138	56	132
TATCGTTTGTAGCAGG	alt_5736_new	45	5	40	42	21	39	13	35	13	30
TTGATTGTCATCACAG	alt_5736_new	447	135	566	487	144	474	190	453	161	433
GATGTTCGCCATTTGT	alt_5736_new	14	7	17	8	3	17	4	11	3	12
ATGCACGAAGCATAGT	alt_5736_new	42	16	67	49	18	49	8	40	25	47
AAGCTGTGTAGATTCC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GGACCGCGGAAAACAG	alt_5736_new	206	72	249	207	54	178	53	147	58	152
TGTGACTTCTTGTACA	alt_5736_new	89	32	126	127	47	113	48	110	53	95
TGAGACCGCTTCTTTC	alt_5736_new	116	40	134	121	26	120	57	95	24	96
CCATTGTACTAAACCC	alt_5736_new	32	53	58	57	60	29	72	35	66	40
CATAAGTGATGAGCTT	alt_5736_new	301	93	336	311	100	271	101	260	120	271
TACACTTATGGCTTTG	alt_5736_new	73	24	86	75	36	72	26	64	32	57
AATTTCATTGTCGAAT	alt_5736_new	65	26	54	63	19	62	25	61	23	41
TGTATTTCATAAATCC	alt_5736_new	8	6	13	17	3	10	4	12	7	10
AGGATCCATCGGCAGT	alt_5736_new	116	39	133	120	36	91	41	110	40	106
TCCTTTTCCCTTAGCT	alt_5736_new	256	93	272	222	92	223	94	231	90	200
TTGGCTTACACCCGCC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
ACGTTCTGTCATTAAG	alt_5736_new	87	24	115	87	33	98	39	85	31	74
GGCGCCACAGCCGACT	alt_5736_new	82	15	84	92	29	83	21	61	19	62
CAGTCTAGTTCTTCGA	alt_5736_new	95	55	114	97	68	68	46	82	47	70
GCCTTTTCTTAACCTC	alt_5736_new	93	42	155	136	36	86	45	88	33	105
GTTTGTTGCGGTTGGA	alt_5736_new	228	101	294	269	79	216	100	266	98	223
CTATAGGTTCGCTTGT	alt_5736_new	83	24	94	74	24	58	33	62	34	66
CTGGAACTCTCGGCTG	alt_5736_new	124	33	151	129	43	119	53	121	38	107
GCGCACTCGATTTGGC	alt_5736_new	339	103	396	338	104	256	106	267	104	225
CGATGATAGATGCCTT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CTGTTTTTGCAACGTG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CATCCTTGTAACGCTC	alt_5736_new	217	81	228	219	76	176	98	219	69	156
CTCGCGGCAAACAGGA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TTATATCGGCCTGCTC	alt_5736_new	161	42	166	153	49	123	49	130	45	144
CTTGTGAGTGGACCAC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GGCCCACTATAGATCG	alt_5736_new	174	63	202	179	41	185	61	162	61	142
GAAGCTCAGGAACTTT	alt_5736_new	9	2	5	0	0	1	0	2	1	4
TAGTTCCCATGCATTA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GCATAACTCTGATATG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GCTTAGTACAGATTCG	alt_5736_new	78	29	89	104	28	64	43	88	26	83
GTTTGTTTACGATGGG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CATCAAGGACTACCTC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GTACGACACCGTCTTT	alt_5736_new	49	24	88	51	21	43	17	44	26	45
CTTTGGTCCGGCACAA	alt_5736_new	111	53	120	120	69	110	51	110	50	87
CGGCTTTCTCTTTATG	alt_5736_new	752	226	887	748	196	680	190	629	207	592
CTTGGGCGTACGTTCT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GTTTTTGGTAGTAGCT	alt_5736_new	327	119	420	318	112	306	132	325	135	277
CACTCCACGGTCCTCT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GGAGTTGAGTTTTAGA	alt_5736_new	56	31	56	50	8	64	20	54	16	41
TTCGATCTTGCGAGGT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GTAAGTTGTACCTGAG	alt_5736_new	33	9	23	29	6	25	5	27	6	17
GCGACTCCGCGTTGGT	alt_5736_new	225	70	250	189	104	190	80	192	100	172
TTCTCGAACTGCCGGA	alt_5736_new	98	38	103	100	50	85	26	88	28	91
ACACGCCGTCTCGTCG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TCAGAGTATTTCTTTC	alt_5736_new	57	30	90	89	34	64	29	59	35	67
TTCCTGTATGCAATCT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TTTTAGGCTTTCGGTC	alt_5736_new	77	23	103	99	23	74	31	84	26	72
TACTTGAATTCAGTCT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GCTTTCCCTCAAAAGG	alt_5736_new	68	28	80	77	36	58	18	70	29	63
CTCTAGGGCTGCATGA	alt_5736_new	84	23	111	104	39	70	35	114	36	88
TTTGGCGGCCTCCGAC	alt_5736_new	111	26	131	94	42	99	34	104	32	86
TTTTCGCGTAGGCTGG	alt_5736_new	106	57	145	120	46	110	53	126	39	90
TTTTTGCGGTGAGCAG	alt_5736_new	0	5	1	1	3	2	1	2	1	3
TACGCTGTTTGGTGCC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CTCAGTCGGTTTTAAA	alt_5736_new	143	59	133	140	63	129	55	118	61	137
AAGGACAAAGGCAAAC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TCTAGCCGCGATCCGG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GCATCTTCGGTCCCGT	alt_5736_new	134	36	145	168	35	156	49	134	43	137
GAAGGAACTCGACGGT	alt_5736_new	351	151	424	398	154	336	146	364	143	317
CGCCTTCAGTAAAACA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
ACCCCCCGCCTTGGCG	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TTCGTACTAATCCCGA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AAGCCCATAGGGCATT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GGCTCTACCCGCGAGA	alt_5736_new	29	26	63	73	35	37	21	54	38	52
CTGGTCCGTTATTGAC	alt_5736_new	67	36	74	60	38	63	33	73	35	54
CGCAGGTTCGTCAGAT	alt_5736_new	63	37	96	80	24	83	26	58	32	55
CTAGTTAACATGGACT	alt_5736_new	30	8	22	16	11	24	6	29	9	26
GTACTCACCCACTACA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TATTTTCCATTGCGCG	alt_5736_new	38	15	37	26	10	31	12	18	10	18
TCGGGATGGTCTATTT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AGGTTATATCGTTTGC	alt_5736_new	33	21	49	35	6	37	18	28	19	28
CGCTCCATGCGGTATA	alt_5736_new	362	115	428	410	128	388	145	376	122	332
CTGCTTGGAGAAGTTG	alt_5736_new	379	165	506	436	159	375	140	349	173	385
CTCTACCCTTGGGAGA	alt_5736_new	71	27	102	90	29	80	33	79	28	83
CGCTTGCCATTGTTTT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TGGAAATATCTATCTC	alt_5736_new	134	60	191	171	45	143	55	135	50	116
GCGCTCAATCCGGGTA	alt_5736_new	257	93	319	275	103	245	85	213	80	201
GATCGATATCAATGCT	alt_5736_new	167	56	203	182	64	168	67	152	52	148
GTACATCGCGTAATTG	alt_5736_new	65	22	70	72	19	58	23	73	14	55
GGTACCCGACCGGGTT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
ATCCAGAACTTTGAGT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CCCATTACCGTAAAGT	alt_5736_new	20	9	26	14	3	15	8	15	9	20
GAAGTCTGCTCCCTGG	alt_5736_new	333	113	452	406	134	333	122	354	120	287
TGAGACTTGGAGAATA	alt_5736_new	737	287	957	828	283	744	328	726	262	646
TGCTCTTAGAGGTATT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GAAATCTGTGCTCCCG	alt_5736_new	91	36	75	81	17	70	25	67	35	56
CACGGGTTTTTCTGCA	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AACAAGACGTTTAGTG	alt_5736_new	58	19	61	54	27	58	25	51	21	49
TGTTTTCAACTCAACC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
CAGGAAGTTCGGTGCG	alt_5736_new	555	265	738	676	240	546	228	585	232	539
TGTCATTTGAATCTAG	alt_5736_new	115	41	182	174	56	165	50	139	58	137
AGCTTCTTGTTGCGGT	alt_5736_new	58	29	77	65	18	65	17	69	27	57
GTATTTCGGGGATGAT	alt_5736_new	19	7	24	20	5	16	8	20	4	16
CTCTTCATGGTCGTAT	alt_5736_new	158	56	192	188	34	123	43	149	53	141
TCACATTGCTTTCTTT	alt_5736_new	0	0	0	0	0	0	0	0	0	0
AATATGCCTATTGCCC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GCGGGACCCTTTGCAG	alt_5736_new	613	179	764	656	193	567	188	510	221	508
CACCAACATAGTCTTA	alt_5736_new	193	69	231	222	82	183	95	206	79	177
TTTCCAGACCCGAAAT	alt_5736_new	20	9	20	21	14	20	11	26	15	12
TCTAGTCGTTGGGGCC	alt_5736_new	0	0	0	2	0	0	0	1	0	0
TTTGCCCAGGGCCTCG	alt_5736_new	893	297	1144	1063	247	871	279	813	298	801
ACAGAGCATTACAATC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
TTTGTTATTCTTCCCA	alt_5736_new	2	8	6	8	4	16	5	8	6	5
ACCCCAAAGCTTTGAG	alt_5736_new	52	9	51	39	8	42	23	44	17	38
GTTCTAAGTGGGGTAC	alt_5736_new	0	0	0	0	0	0	0	0	0	0
GTTTTACTGGCTGAGG	alt_5736_new	295	127	400	323	110	261	118	309	111	250
TACGCGGTTTTCAACA	alt_5736_new	78	28	110	77	24	78	27	67	32	73
GTCCAGCGTGGGGTTC	alt_5736_new	35	10	45	40	15	23	5	23	17	27
TGTTGGATTTTAGTCC	alt_5736_new	2	0	10	3	2	2	0	3	3	8
TCTAATCTCCTGGGTC	alt_5736_new	23	15	33	21	9	18	9	22	9	18
GATGCCGATCTTGGAG	ref_3303_upstream	38	20	49	39	12	30	19	41	21	55
CCAGCGATTTGAACGA	ref_3303_upstream	17	7	24	24	8	19	9	9	12	12
TATAGCCTGTAGCACC	ref_3303_upstream	139	78	172	145	57	136	58	113	64	116
TTTCCTTGAAGTCCTG	ref_3303_upstream	142	66	161	134	89	106	63	139	80	135
CGGCACCTCTTGCGAC	ref_3303_upstream	42	23	43	38	5	35	30	24	11	27
CCATTTATTAGTTATC	ref_3303_upstream	51	29	52	52	29	51	27	43	27	42
CCGCTATGTAATTTCG	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTTCAGCATTGTG	ref_3303_upstream	376	172	439	394	183	281	233	324	209	356
ACAGGGCCCAACATTT	ref_3303_upstream	121	41	100	88	37	77	44	95	52	88
GTCAGCTGGTCTCCAA	ref_3303_upstream	31	13	44	25	14	37	18	34	15	28
GCGGTAATTAAAGCTC	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTGCTCTCTTACC	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGGGATGTGTGTT	ref_3303_upstream	4	0	2	3	1	5	1	4	4	4
GTCACTTGTATTACAT	ref_3303_upstream	223	118	308	230	123	246	130	227	148	164
TCGCCCAAACTAGGGT	ref_3303_upstream	42	25	66	60	23	48	17	50	25	50
AACATATTAGCATATT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
TCACGTCATACTTTGC	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
ATAAATAAGCAGCTAG	ref_3303_upstream	28	11	21	26	14	18	22	12	15	21
GTTCACCCTTTATATC	ref_3303_upstream	42	28	54	46	23	54	18	43	22	43
GGCTTCTCATACCTAA	ref_3303_upstream	52	34	68	45	28	43	28	42	29	41
CGGCATTTTATCCACC	ref_3303_upstream	17	10	15	24	12	18	5	15	11	13
CGCTCGAGGTTATAGG	ref_3303_upstream	8	1	13	8	6	2	0	11	4	11
CAGGTATCGGTACCGC	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTTTTTTTTGTA	ref_3303_upstream	26	16	39	40	18	15	23	30	15	20
TAGTAATTGCTTTCTC	ref_3303_upstream	23	4	30	14	9	17	11	21	11	14
CGTCTTCCGCAGAAGA	ref_3303_upstream	84	44	152	128	60	91	43	94	68	98
TTGGTGCCGTACCAAC	ref_3303_upstream	269	151	365	314	168	264	150	285	163	244
GGCGGGGTTATTCGAG	ref_3303_upstream	69	23	54	61	32	54	30	62	27	33
AAGCTATCTTACCTGA	ref_3303_upstream	6	3	7	8	13	8	3	7	1	3
TAGATAAGATCGTTTA	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTACGAGTGAGGACTG	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
CACTTTTCACTTTGAT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTCATGTAATACT	ref_3303_upstream	58	38	83	71	38	56	24	57	44	42
GAGCTACTTTGTCTGG	ref_3303_upstream	29	13	41	29	20	30	12	41	11	28
TTGTTGTTACACCATC	ref_3303_upstream	2	9	21	13	3	7	3	3	4	10
TCGTTATATGAAGCTA	ref_3303_upstream	38	9	45	42	14	28	27	50	14	42
CAGGTGGTCCCTCTGT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCGATCATCGCGG	ref_3303_upstream	3	1	3	4	3	3	0	5	5	3
CTCAATTTGTCGCACG	ref_3303_upstream	153	74	169	150	76	117	85	129	67	123
CTCTTTGTGGTTTTCT	ref_3303_upstream	179	68	231	219	67	165	85	183	62	168
ACGATTACGTGGTTGG	ref_3303_upstream	264	164	327	289	153	270	126	276	141	264
TTAGACTACGCTCCTG	ref_3303_upstream	113	74	175	146	80	141	78	141	74	101
CTATTTATAGTGGACT	ref_3303_upstream	131	61	155	124	75	118	72	102	82	96
TGAGCTTAGAGAACGT	ref_3303_upstream	93	45	126	113	58	105	54	91	48	76
CATTAATTTGAGGTAT	ref_3303_upstream	10	6	15	17	8	10	7	15	6	16
CTGGGTTTAGTTATTA	ref_3303_upstream	36	24	56	38	27	45	18	54	24	37
TTTCTCATTCCATAGG	ref_3303_upstream	155	61	205	155	68	139	94	129	87	149
TAGACTAATCGACTTG	ref_3303_upstream	128	94	158	127	85	120	79	143	86	114
CTCTTGCATATATGTT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
CACGCCAACCTTATAT	ref_3303_upstream	0	2	0	4	1	0	0	0	0	0
AGGCTGATGGTGTATT	ref_3303_upstream	528	255	666	601	300	562	297	559	279	461
TGCCAGAGGATCATGG	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCTGCTTTGGGCG	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
CTGCATTTGACGTAAA	ref_3303_upstream	61	24	75	48	24	51	32	56	32	28
TGCTGATCATGCTTGG	ref_3303_upstream	1	0	7	3	1	6	1	4	0	9
TGGTTAGCAATTTACA	ref_3303_upstream	54	43	100	65	33	74	33	77	47	61
CCAAGATCTGCCGCTC	ref_3303_upstream	50	39	63	89	38	70	56	71	38	62
GGGGCGCCTATGCTAA	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTGACGGGTTGCA	ref_3303_upstream	20	7	22	22	15	16	13	17	10	16
ATCGATTTTACGTTAT	ref_3303_upstream	21	15	17	29	11	23	8	15	14	27
CTCTTAGTTACTTGTT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGGGGTGTCGGTC	ref_3303_upstream	14	6	14	20	4	8	1	16	7	14
CCGAACCTGTACCCAC	ref_3303_upstream	22	20	33	34	20	26	8	27	17	29
AGTGCTACAGAGAGGC	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GATCTGCTTCCAATAT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GAATCGATATCTTCGT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
CGTACGTCCGGGAAAA	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTGTGCCTGCCGT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTACGCGCCTGAACCG	ref_3303_upstream	184	107	249	197	101	171	115	167	120	185
TTGGTAGCTTTAACAC	ref_3303_upstream	59	30	65	50	25	37	33	65	25	35
TACCATCTATCTGTGT	ref_3303_upstream	188	124	215	239	124	191	118	202	145	184
ACTCTCTAACGTATTT	ref_3303_upstream	3	1	4	2	0	5	1	2	0	3
TTCAATTAGATTTCAA	ref_3303_upstream	22	10	22	24	10	23	14	18	11	24
ATAACAATATAATTTG	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
CCTCACCATGACTATG	ref_3303_upstream	17	50	16	14	43	11	40	10	66	9
TTGGTTTTAGTAATGC	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGAGGTGCCAGTG	ref_3303_upstream	17	6	24	8	8	12	6	8	7	14
CTTCTTCGGATAATGT	ref_3303_upstream	37	19	53	51	28	35	37	31	34	31
ATACCTGGTACGGAAG	ref_3303_upstream	71	35	83	78	30	76	39	61	42	59
CGCGCATGCTTCGACA	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTTATTGGTTCA	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATTACGCAGGGG	ref_3303_upstream	292	141	441	391	179	315	209	341	193	274
GGGACCTACAATTAAC	ref_3303_upstream	237	93	280	221	93	206	95	195	126	192
AGTGGATGATTACAGT	ref_3303_upstream	91	58	108	129	54	113	59	101	76	85
TCGAGTGAATGAATCT	ref_3303_upstream	36	25	38	44	23	24	18	28	14	37
GAGTACAGATAAATTA	ref_3303_upstream	123	70	144	124	77	115	72	110	60	113
AACGACCTTTCCTTGG	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGCGTGCTCACGA	ref_3303_upstream	170	80	224	187	81	159	103	143	86	126
TTCTGAGGGTGCCCCG	ref_3303_upstream	74	35	78	77	40	49	55	69	33	69
GTAGACACATGTGTGT	ref_3303_upstream	16	16	24	25	11	18	6	25	9	16
TGGGAGATTATAGTAC	ref_3303_upstream	110	75	138	132	55	106	76	107	79	112
TCGTGGTTTCGTCATG	ref_3303_upstream	6	6	20	18	6	16	10	11	12	16
ACATTTCAGTGAAATT	ref_3303_upstream	12	3	20	23	11	12	21	17	5	10
TGCTCCGGAGTTTTTC	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
CAGATTGTCTGACTTT	ref_3303_upstream	26	11	24	20	11	30	9	23	10	20
CAGTGTTGACCGGCCT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
CCTACATAGGAAAGTA	ref_3303_upstream	18	22	40	22	13	31	22	25	21	20
GTCACGGGCGACTATT	ref_3303_upstream	8	23	17	21	18	14	19	22	13	16
CTGTTTGTGGGACAGA	ref_3303_upstream	3	4	4	5	3	6	3	7	4	0
ATGACCCGATAGGAAC	ref_3303_upstream	180	76	214	196	94	163	105	159	123	154
TCCCTTGCAGGCTCCT	ref_3303_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTCTGCGCACCTT	ref_3303_upstream	52	23	70	63	29	54	27	45	26	44
TACACAATGGCAAAGT	ref_3303_upstream	36	21	59	38	24	44	19	24	20	29
TGTTGCCCTTTGCCCC	ref_3303_upstream	243	96	305	279	93	207	114	231	111	212
GATTCGGAATAGCCTC	ref_3303_upstream	36	11	34	43	12	32	9	38	11	29
TGAAAAAGGTTTTGCA	ref_3303_upstream	102	68	129	95	56	78	60	66	49	82
GCACACGGATTTGGTG	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TCGCTTTATCGGTAGA	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
GCCCAATTTCCGGGTG	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TTACACCTGCGAGATC	alt_2290_missing	4	11	13	7	18	10	14	2	20	6
TAAGTATATACGGTCG	alt_2290_missing	12	21	9	6	23	6	17	17	23	8
CACGCTTTATTTTGAG	alt_2290_missing	16	21	8	15	21	12	24	10	24	10
CTTGAATTCGGACCGA	alt_2290_missing	5	16	4	4	8	8	10	8	11	1
GGCATTATTGACACCC	alt_2290_missing	7	12	17	8	21	6	13	4	8	8
AGATATCCCCGTCCAA	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TAGGGCACACGTTGGC	alt_2290_missing	6	13	11	14	14	10	25	8	20	10
ACCATACAATGTGTGA	alt_2290_missing	4	5	3	2	1	1	2	1	8	0
TACCGTATATGGACGG	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
GATTTCACCCTACGCA	alt_2290_missing	12	23	12	10	26	3	17	8	29	11
GGGTTACGGATACGTC	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTATCCAACACC	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
GTTCGGTTTTCTCTTA	alt_2290_missing	4	22	4	6	31	1	25	3	17	3
CACGTGACCGGTCTCC	alt_2290_missing	1	1	1	5	5	4	7	2	1	2
ATAGGAGTTTTCACTG	alt_2290_missing	64	111	60	65	108	50	100	49	115	52
TGAGGTCCCTATTTAC	alt_2290_missing	14	31	14	9	15	11	23	19	31	10
ACCTATACTCAAATTA	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
AAGTGTTCGATGCAAA	alt_2290_missing	19	18	15	21	20	14	27	6	23	17
TTAAGGTTGGGCAGGG	alt_2290_missing	33	83	18	30	73	36	79	33	98	34
TGTCCTCTCAGGTTAC	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TTGACCTGCACACGGA	alt_2290_missing	2	4	1	5	11	1	3	5	4	7
TTTATCCCTCCTACAC	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
CCCCTCAAGGCGCCAT	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
GGACTATCATAGTCGG	alt_2290_missing	11	11	10	11	15	7	14	6	10	15
CTAAGATACGTTAGTT	alt_2290_missing	8	11	2	3	8	3	9	3	10	2
TTCTCTCTTTACGCCG	alt_2290_missing	29	49	38	27	49	29	55	26	69	36
CAGACGGCGAGACAAC	alt_2290_missing	33	53	45	53	60	36	52	29	67	36
TCCGCCTCGAAGGACG	alt_2290_missing	22	40	31	23	44	23	59	19	64	21
CTTATAGAGGTACTGT	alt_2290_missing	4	17	6	15	19	7	14	5	12	6
CCTAAGATTCATTGCA	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TTTGGCAATTCCCTGG	alt_2290_missing	7	8	8	6	11	4	8	5	6	7
GCAAGGCGGTTAAACC	alt_2290_missing	4	10	1	0	3	5	4	4	4	0
GAATCTCCAGCAGCAT	alt_2290_missing	14	18	14	12	23	18	30	17	25	13
GGTGCTTATAATACCG	alt_2290_missing	1	1	0	0	2	1	3	0	0	0
TGGTACTATGCGTGTA	alt_2290_missing	21	48	26	16	55	28	58	23	68	9
CGGGCACTTCGACTTC	alt_2290_missing	41	69	36	37	62	32	67	24	65	33
TTCGTAATCAGAGGGT	alt_2290_missing	33	77	37	40	74	26	77	26	71	32
ATTCTGGGGCAGAAAT	alt_2290_missing	0	1	1	0	1	0	0	0	1	0
CTTCCAGGGCAACTAG	alt_2290_missing	3	10	6	6	2	3	9	2	9	5
AATTGGGTTTCATGTC	alt_2290_missing	5	9	8	5	11	4	6	4	10	9
GAATCGGCGTCTGGCG	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
ATAGCGAGGAGTTCCT	alt_2290_missing	22	57	31	27	46	20	51	17	38	20
TATAAGCTAGCTGGCA	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TGTGGTGTATTCCGTA	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
GGACCAAACAAAACTC	alt_2290_missing	24	46	19	11	34	23	36	16	52	22
CAGTAAAGCGCCCGGC	alt_2290_missing	10	22	17	10	13	16	21	15	25	15
CGCTAGGCTGTCTTAT	alt_2290_missing	1	7	3	1	6	4	4	2	4	1
AATTTAGCCTCCTCTA	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TCGCCCTGTTTTTGGT	alt_2290_missing	42	58	46	34	52	27	70	30	57	30
GCCTCCCGATTTACGT	alt_2290_missing	44	113	54	49	102	49	142	51	137	37
TCACAGCATTCGTGCT	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TGACCCCATAAGGAAA	alt_2290_missing	10	27	24	29	23	18	29	13	36	10
TTATCATGTAGTATAT	alt_2290_missing	25	55	20	23	47	16	39	20	38	16
TCTGTGGTCAGGTGGG	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
CGCGCTTTCCGCTATA	alt_2290_missing	3	6	6	4	9	6	6	6	20	0
CTTAAGTGTATGTTTC	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TGGCGAGATTGCAATG	alt_2290_missing	11	24	11	12	29	7	33	13	25	13
TCCTCCCCAATTTATG	alt_2290_missing	10	40	8	9	52	11	52	13	52	12
AACACCTGTTCTTGTT	alt_2290_missing	11	15	9	3	11	7	13	7	11	6
ATTTATCCACGGGGCC	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
CCTCTATGTTGTTCTG	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
TTGATATGCTATTTGT	alt_2290_missing	0	0	0	0	0	0	0	0	0	0
AGCGCTACCTTGCATC	ref_3976_missing	152	13	216	195	12	138	26	153	22	144
CTGGTAGTTCCCACAT	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
ACGGGTTATTTGCTCA	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
GTCATCTATACAGTCG	ref_3976_missing	570	63	728	639	58	551	61	631	53	526
TTTTGTTGTGGACTGG	ref_3976_missing	270	16	340	334	37	319	29	323	34	245
CCTAGTACTTCTATAC	ref_3976_missing	64	4	95	87	4	73	10	82	9	65
TGGTATCTCCTTAAAG	ref_3976_missing	1242	107	1580	1380	128	1143	134	1164	120	987
CCTAGGTAACTGGTCT	ref_3976_missing	247	23	276	226	27	161	28	189	29	211
GCGATCAGCTAACCGG	ref_3976_missing	167	20	204	227	16	157	16	185	13	164
TTGTTCTTTCTGTGCG	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
CTTAGTAATGGGCGAG	ref_3976_missing	849	71	1051	940	91	846	93	824	97	669
GTGGAGTCACATTAAC	ref_3976_missing	717	72	873	807	68	642	77	712	60	640
AAGCATTCCAATGTCG	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
GAGTGACGTGGTTTAG	ref_3976_missing	335	58	406	330	43	288	51	333	48	235
GATCCACTGCACGTGG	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
TTCTCATGCGTGTTTC	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
CACAGTTCCATTAAGG	ref_3976_missing	1894	169	2376	2176	188	1756	195	1866	198	1741
GTCTGGGTTTCAGTAC	ref_3976_missing	309	37	359	340	22	303	45	248	30	219
CAAGGTTAGAAGGAGG	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
TCTACACTAGGCCTGG	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
TGTAATTTATTCTCGG	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
CGGTGCTTGTTTCGTC	ref_3976_missing	180	14	181	196	12	184	18	199	17	146
GATTCAGCTACACCTT	ref_3976_missing	3254	339	3952	3703	336	3080	341	3074	342	2765
GGGACTTTGAAGATTT	ref_3976_missing	498	52	628	577	52	453	39	469	44	407
GAAGGAGTGTATGTAT	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
ACGATTGTCCTCGTTT	ref_3976_missing	412	48	436	399	29	340	43	365	42	321
TCACTGATACTCTTCC	ref_3976_missing	1858	170	2333	2097	150	1815	148	1843	134	1642
GCTAGATTTACGTGAG	ref_3976_missing	1688	158	1971	1843	152	1443	156	1573	180	1423
CAAATCTATGCCTTGG	ref_3976_missing	739	58	884	831	72	649	66	682	60	585
TGAACTTTGCTACTCG	ref_3976_missing	281	28	312	335	29	306	25	282	35	256
TGACACTTCCAGTGCT	ref_3976_missing	418	38	483	372	37	411	36	383	44	341
ATCTCCTTAGGAGTCC	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
TGCTTGCATATTTACA	ref_3976_missing	1335	121	1647	1523	116	1317	118	1286	132	1112
GCCCCTCCGCCGTACC	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
GAGGGTGTTGCGGCTA	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
CTTATTCCATCTGGCT	ref_3976_missing	2543	242	3199	2969	234	2403	277	2499	250	2137
GAAAACCTCAACTGTA	ref_3976_missing	525	52	636	619	51	474	56	494	52	478
GCGGGCAATCCCAAGC	ref_3976_missing	1132	113	1369	1310	117	998	114	1143	112	927
GACGTTTGACTTTCTG	ref_3976_missing	809	82	1137	1009	89	818	98	785	81	815
CATCGTTGATGTCGAC	ref_3976_missing	1449	151	1773	1635	153	1320	172	1396	127	1272
TCCAAGGGACTGGGCT	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
GCCTTTAACTTAGGTG	ref_3976_missing	507	44	632	587	55	494	45	521	67	480
GTATCACATTGTCAAG	ref_3976_missing	61	10	88	70	11	76	4	68	7	66
TCATGGCAGGTGATTC	ref_3976_missing	1406	135	1799	1549	129	1365	152	1482	150	1199
CCTAATCCCCGTCACA	ref_3976_missing	308	120	481	476	123	341	142	432	119	276
GCTACATGGGGCTCGC	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
ATCCGCGCAGCCAAAT	ref_3976_missing	3941	391	5068	4581	476	3807	451	3963	434	3597
ATTTAGGAAGATTGTT	ref_3976_missing	457	34	559	547	44	453	44	418	46	358
GTCTTCTTTCGTTGGT	ref_3976_missing	156	21	180	187	18	143	13	132	12	136
TCGTGGACAATCTCCG	alt_3976_missing	489	48	632	530	51	470	54	477	44	425
TCACTCTCTAACCTAT	ref_3976_missing	14	2	8	9	0	5	0	5	2	11
TGGCGTCAGATAGGAA	ref_3976_missing	55	1	82	70	8	57	2	65	8	52
ATGGTTCTTCGAGGTC	ref_3976_missing	502	37	628	516	50	455	57	504	43	369
TCCTTGCTTCCGAGGC	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
TTTACAAGTGTTTCAT	ref_3976_missing	1835	217	2088	2014	173	1712	196	1792	223	1675
CGGTACGCTTGTGTTT	ref_3976_missing	133	17	171	150	7	113	12	115	15	96
TGTTGCTTGATCTACA	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
TCGACCGATCTTTGAT	ref_3976_missing	198	12	207	182	24	157	22	159	16	149
ACTGATGATTTCTTCT	ref_3976_missing	950	63	1157	1021	81	913	85	966	65	840
GGCGTTAATTTTTTGG	ref_3976_missing	543	49	640	606	44	508	53	533	66	460
CGGGTGGCCTGATGAC	ref_3976_missing	0	0	0	0	0	0	0	0	0	0
GGTCTATGTGATGCCA	ref_3976_missing	1377	172	1645	1545	116	1332	127	1412	154	1141
TTATAGGTGTCACAGT	ref_3976_missing	605	48	764	622	70	563	56	518	57	556
TTAGCCGTCGTTTCGA	alt_6106_new	43	29	45	51	28	33	39	38	24	31
ACAGTGCGACAGGAGT	alt_6106_new	9	23	8	14	15	10	15	13	16	8
TACCTGAAGTAACTAT	alt_6106_new	27	11	28	30	16	21	13	18	10	22
GGTATCGTGAATTTCT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TCGGTGTCTGCAGGCC	alt_6106_new	0	0	0	0	0	0	0	0	0	0
AATCTCCATCCTGAGG	alt_6106_new	23	14	19	20	8	18	12	23	9	18
ACTTGGTATATTAGAT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GGTACACACTTTGGCA	alt_6106_new	25	11	23	12	11	14	10	17	12	21
AGATTTGGGCAACCCT	alt_6106_new	8	5	9	5	6	2	1	2	2	3
GGCATCTCGCAGTTTG	alt_6106_new	105	70	107	100	60	101	67	105	64	74
GACTATGCGTCGATTA	alt_6106_new	23	21	31	25	14	22	18	18	21	27
GCTCCGATTAATTTAG	alt_6106_new	58	31	76	47	32	58	34	37	41	49
CGCGTCTATTTTCTTC	alt_6106_new	45	37	64	56	37	37	40	55	40	35
ATCGAGTTACTACGCA	alt_6106_new	0	0	0	0	0	0	0	0	0	0
AGTCCTTAAGCTGGAC	alt_6106_new	165	99	177	163	101	120	91	160	122	137
TTACCATTCACGATTT	alt_6106_new	106	63	122	105	59	94	62	79	72	80
GAACTCCGCTGCTGTG	alt_6106_new	11	6	17	10	6	12	7	10	8	11
AGGTCAATATCGCATT	alt_6106_new	38	17	33	20	10	34	15	24	14	21
AATTGTAGTATTCGCG	alt_6106_new	23	11	36	27	16	22	11	36	12	19
TAGTGCCGTCGATTTT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TGGTCTCAAAGTCGCA	alt_6106_new	51	34	64	44	36	41	35	61	32	46
GCCACCGCTACTTGGC	alt_6106_new	26	30	40	39	31	36	27	17	25	30
TGCAGTACAGATTGCC	alt_6106_new	2	5	1	2	4	7	4	1	4	2
CAACGTAACAATCTGT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
CGGTTCCCTACATTTT	alt_6106_new	31	16	47	36	22	44	18	42	23	31
TAGATTTGGGAATAAG	alt_6106_new	89	46	108	100	51	79	64	79	64	60
TCTCCTTTCTTTACGA	alt_6106_new	32	19	27	32	10	24	21	19	5	21
AATTTAGGGTAAAGTA	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GTTCGTCAGCCTTACG	alt_6106_new	31	15	45	39	29	26	18	30	24	26
AAGACGGCGCTGGTGT	alt_6106_new	30	18	42	24	14	26	14	26	16	24
TTGGCACGTATATCTA	alt_6106_new	22	10	27	20	10	23	13	27	10	17
ATTTATCTTCCGCCCA	alt_6106_new	91	43	127	108	50	86	64	84	52	88
TGTTAATTGGTTTTGC	alt_6106_new	26	12	45	34	33	25	21	34	18	33
TGAATTATTGGTGGAG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TGCGAGGTGCTTGCGT	alt_6106_new	23	19	41	27	18	29	18	28	16	24
ATAGACGCTGCTTGGC	alt_6106_new	12	12	19	15	8	10	6	15	9	12
GCGTGAGTACCTTTGC	alt_6106_new	17	13	18	21	8	27	10	19	5	18
ACCTAGTACAACGTAG	alt_6106_new	2	1	2	8	0	1	6	1	5	1
AAGTGCTCAAGTCCAC	alt_6106_new	17	15	13	15	18	18	14	12	6	15
CCGACGATCTTTGTCC	alt_6106_new	6	3	9	8	5	6	6	3	6	6
GGCTATAAAAAAGCTG	alt_6106_new	81	69	146	101	74	85	92	97	68	84
CAGTTTTTCTTCGGTA	alt_6106_new	60	30	76	54	28	58	32	40	38	41
CAGCAACCGGTCCAAG	alt_6106_new	38	63	66	64	58	31	62	42	47	39
GTCTTTGTAACGACTT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GGCATGTGGTGGATGA	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TCATTTTACATCGACC	alt_6106_new	0	0	0	0	0	0	0	0	0	0
CTCCAGTATTGCGTGA	alt_6106_new	48	31	53	48	32	45	22	41	38	24
TGCTTCCGATGGGCCC	alt_6106_new	19	6	37	33	14	17	17	24	19	22
GTAATGATCGCGCGAA	alt_6106_new	5	3	13	5	4	3	2	9	4	10
CGCGGGTTGTCCCCGT	alt_6106_new	9	4	11	8	8	10	5	11	2	9
GAACCGTCAACAGCTC	alt_6106_new	150	70	173	163	92	113	78	116	99	127
CGTTGAGATCCTGGTG	alt_6106_new	90	54	94	95	36	78	60	76	59	63
CACCCGGCTGCTTATT	alt_6106_new	34	16	25	36	19	29	11	32	18	21
TACATGGTTGTCACAC	alt_6106_new	3	3	3	3	1	4	3	2	1	4
CAGTGCTAACGGGCGG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GCAGCCGTGACTACCC	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TTGTGGTCGATTCGGA	alt_6106_new	5	5	7	4	6	1	10	7	7	4
ACAGGCACACTTCCCC	alt_6106_new	2	1	4	1	3	1	1	0	4	1
TCTCCTTTATGAGAGT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TTCGAGCTTCTGGATT	alt_6106_new	7	8	11	6	8	5	15	8	10	3
TGGTGTTCTATTTGAT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TTACGACTGTGTTATC	alt_6106_new	66	32	70	68	27	65	40	54	49	49
CTATCATGAATTTTCG	alt_6106_new	417	254	529	437	243	435	262	397	236	373
CGTCCGAGCCTATCGA	alt_6106_new	11	7	9	13	4	6	3	6	9	8
TTGTAATCTAACATAT	alt_6106_new	11	10	6	7	6	15	9	7	9	13
TAGTCCTTCCGGTTTA	alt_6106_new	8	2	13	8	6	5	3	8	4	4
CTCGCTTTGGTGATTC	alt_6106_new	19	6	18	16	8	18	3	7	6	7
CGGATAAAGCAGCGAT	alt_6106_new	38	13	44	39	14	31	24	39	28	18
AGCGTGATGGGTAATC	alt_6106_new	35	32	77	48	36	48	28	52	29	45
CCTGCACCAATAGGCG	alt_6106_new	89	83	112	89	78	77	78	110	76	91
CTTTACCCTGCCACTT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GAAATTTTTTGAGTGT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
AACTATCAGATGGGTC	alt_6106_new	4	2	6	4	1	4	3	7	5	0
CGGTACGCTTGTATGA	alt_6106_new	122	55	119	128	54	58	52	77	58	77
GTGGCTGTTTCACTCT	alt_6106_new	18	14	38	28	12	14	7	23	17	12
GCCTGTCGGACGCCAT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
AGGAACTAGAAGACTA	alt_6106_new	167	118	171	166	115	140	119	150	114	140
TGATGCTCTCGCGGGT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GTTACCTTGTCGTTCG	alt_6106_new	80	34	82	72	38	69	42	70	31	57
CAGTGTTACTCGGCAA	alt_6106_new	66	36	78	45	42	69	50	49	44	56
GTTCGCCCATCCGGCA	alt_6106_new	9	6	7	13	5	9	5	7	8	7
CGCTGTATTAATCTGT	alt_6106_new	55	46	82	63	31	66	41	63	57	34
TGGAGCTCACTCGTCA	alt_6106_new	25	13	24	10	14	18	16	27	18	21
ATCTATTCTCACTTGG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GCGTCGTCGACCGTAC	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TAATATTACAGGTATC	alt_6106_new	18	7	14	14	13	22	7	15	9	10
CCTTATGGGCGGGTGT	alt_6106_new	163	125	171	151	88	144	107	138	102	121
CTTGCGTCGTGCTACG	alt_6106_new	8	9	12	11	5	1	6	7	7	6
CCTCATTTGTTTTACC	alt_6106_new	34	23	42	43	30	40	17	32	27	27
ACTTGCCCCCACGAGC	alt_6106_new	5	1	13	7	1	6	1	7	5	1
ATTAGTGATATATTTA	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GGAGCCGACCGTTGGG	alt_6106_new	70	31	66	71	44	58	45	65	52	42
GCGTTGAGTATCCGTC	alt_6106_new	115	85	134	115	68	92	69	83	78	107
ATTCCGGCTCGTGCTA	alt_6106_new	37	22	43	23	31	32	22	36	43	40
CTTATGTTGAAAGAAT	alt_6106_new	22	18	18	17	15	18	9	17	13	18
ACGTATACGGACCTAT	alt_6106_new	52	24	69	47	36	48	37	29	46	44
GGGCTCCGTTCTTCAT	alt_6106_new	30	27	46	38	21	41	17	29	20	39
ACTCTCTTGTCTTCTC	alt_6106_new	1	1	8	11	1	3	1	5	2	1
CGTACAATCCGCCAAG	alt_6106_new	21	20	34	26	12	22	12	25	8	27
TGGTGCGACGTCCCCG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GCCTGGACGGCCTAGA	alt_6106_new	30	18	21	30	24	27	26	24	18	20
ACCCTGCACATCAGGG	alt_6106_new	122	63	132	132	77	126	81	118	70	114
CGATTGCTTTCCTATG	alt_6106_new	27	13	30	24	10	16	12	9	22	18
GGCCTCTCTGTCAGGT	alt_6106_new	251	222	329	280	224	257	207	256	269	244
AATTATCAGTACTATT	alt_6106_new	9	8	11	13	2	7	6	12	9	10
TTCCTAATACTCTGCT	alt_6106_new	15	8	13	18	6	10	10	7	10	5
GTCTCCGTTGGGATGA	alt_6106_new	56	35	79	54	29	43	29	51	25	52
TGCTGGCATCCGTCTG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
CTTAGGATGCGTACGT	alt_6106_new	44	32	72	64	44	48	33	54	41	40
AATTGGTATAATCATC	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GGCTAGCCGCGTTTGT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TTTATCGGTCGACGCA	alt_6106_new	29	29	25	27	13	16	26	18	30	14
GCTACTGGGTTAACAG	alt_6106_new	23	20	31	43	22	17	15	24	17	19
AGATGTTTGGCCGGGT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
CCGGCCGCTCACCGAA	alt_6106_new	7	10	14	13	16	11	16	9	19	5
AATTGCACATCTCGAT	alt_6106_new	163	107	197	185	156	163	109	140	94	150
GTAGAGGGTGATCTTT	alt_6106_new	23	24	46	55	12	42	26	35	30	42
CAGTCGCCTTCATAAG	alt_6106_new	14	1	9	6	5	9	4	6	7	14
ACCGCACTCTTGTTTC	alt_6106_new	8	13	30	22	20	20	17	29	20	8
ACAGAAGGTTGCGTTA	alt_6106_new	0	0	0	0	0	0	0	0	0	0
ATAGCTCTCGCTCGCA	alt_6106_new	19	12	37	23	13	29	22	26	24	24
GATCCAGACTATTCGT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TCTGTTTAGCCAGGGT	alt_6106_new	64	31	56	54	24	46	21	52	38	29
CACCCAATGCTACTGG	alt_6106_new	48	51	61	58	45	52	32	58	46	48
GTATCTCGATTGGCAG	alt_6106_new	13	16	14	12	9	14	10	14	9	10
AAAATTCGCTCGCCAC	alt_6106_new	54	35	70	70	42	65	28	62	32	60
TCGAAATTGTTTCAGT	alt_6106_new	40	28	51	53	25	49	38	30	26	51
TCACTCACGAACAGGT	alt_6106_new	62	36	87	52	29	69	36	67	39	48
TGTATTAGGGTGCCAG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
TGTGCTCTCCGTACGA	alt_6106_new	0	0	0	0	0	0	0	0	0	0
GACTGTATACGGGAGC	alt_6106_new	21	15	17	23	10	23	15	10	10	15
CTAGCCCCCAGCCAGG	alt_6106_new	15	11	19	18	6	12	9	17	4	11
CAAATCTCGAGATGCA	alt_6106_new	32	22	43	34	22	30	19	30	24	33
GAGAAGCACCTGTCGG	alt_6106_new	16	3	15	9	7	10	8	11	12	11
AGCCTGGGTTTCGTGC	alt_6106_new	71	59	103	70	61	71	75	77	75	58
AGTTTACCGCCGCGTT	alt_6106_new	0	0	0	0	0	0	0	0	0	0
CTCGATGGCATCTACG	alt_6106_new	0	0	0	0	0	0	0	0	0	0
CATTGTTATCTTTTAT	alt_6106_new	39	11	44	22	22	26	14	36	20	15
ACGCCTCCGTTGGCCT	alt_6106_new	21	14	42	22	23	19	23	16	28	17
GTATACGCAGTTTCTG	alt_2349_reverse	27	43	26	14	30	15	31	22	27	21
CAGCGTTTAGCAAATC	alt_2349_reverse	8	2	12	6	9	5	13	6	8	5
CTCCATCTCGATGCCA	alt_2349_reverse	41	58	61	35	54	40	54	28	52	32
AATTTCCGTAATCTTG	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
ATCGATGAGCATTTTC	alt_2349_reverse	9	13	20	8	12	13	18	14	28	16
GGTGTTGTACTGGGGC	alt_2349_reverse	79	112	85	99	133	83	115	79	108	99
CTCACCCACTTCGCTT	alt_2349_reverse	2	1	5	6	4	11	8	1	9	2
TGAACTGTGACTATTA	alt_2349_reverse	5	6	6	7	9	3	9	2	12	4
GTTCCTGTGAACCATT	alt_2349_reverse	51	78	48	35	68	44	47	37	74	41
CTAATTGATCTGCAGA	alt_2349_reverse	5	8	8	4	8	7	5	3	3	4
CCCGTTTCATCATTGG	alt_2349_reverse	3	5	2	0	5	1	10	0	6	0
AAGTGCCGACAAGCCA	alt_2349_reverse	10	6	5	5	13	4	6	8	10	3
TTTTGGTCTTCGGTAT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GATACCAATATGACGT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAATGGGCGGATT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCGATGGCTGGT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTTGTGCTGTAGC	alt_2349_reverse	34	35	54	35	54	40	55	28	50	32
CTGACATTTATACCTT	alt_2349_reverse	22	33	29	25	36	32	21	21	30	26
GACCTCTGCCTTGTAT	alt_2349_reverse	39	60	55	42	65	51	73	35	75	32
TACCCCGTGCACCTGG	alt_2349_reverse	3	3	0	2	2	2	6	6	4	3
GATGCAACCTTAATCT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCAAGCAGCAGCG	alt_2349_reverse	7	10	11	8	9	7	15	9	7	7
GTCTGGTTTCGTTCCT	alt_2349_reverse	13	7	14	8	15	6	7	17	11	10
ATGTTGCCGGCGTATT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTGCGTTGTTTTT	alt_2349_reverse	6	21	18	13	20	9	14	10	27	9
GTTATTTTACGGGTGT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGATTTCAATTGT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
ACCGATGTTAGAAATA	alt_2349_reverse	62	73	67	54	86	60	67	57	83	56
CTTTTGCGAATTCACA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTTGGCAAGCTGG	alt_2349_reverse	11	18	24	12	19	15	7	11	31	8
ACAGCGACTTAAATCC	alt_2349_reverse	5	9	1	7	7	3	3	3	8	0
AATGATTTCTTTTTAT	alt_2349_reverse	35	46	51	41	28	43	31	50	47	51
CCAGTAAGAGTGGTTC	alt_2349_reverse	2	9	4	4	6	10	15	0	6	1
AGAGCCAGTTGCGTGG	alt_2349_reverse	1	2	5	0	6	3	8	5	7	5
GATTAGGGTCGACCTG	alt_2349_reverse	18	18	22	14	15	20	28	16	27	10
CGTTTCATTTGCCCAA	alt_2349_reverse	4	10	10	11	10	7	16	7	6	8
TGGGCGGTATTAAATA	alt_2349_reverse	12	24	22	13	24	9	27	21	31	20
GGCTTGCCGGTACACG	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CAGAGCCTTTCTTCAT	alt_2349_reverse	18	21	13	10	10	15	11	17	17	8
CCTGTAGGTACTCTAG	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CAGAACTCCTGGGGCT	alt_2349_reverse	5	9	13	7	15	7	13	6	5	5
GTGACCCGTTGGCCGT	alt_2349_reverse	6	10	3	8	15	3	19	8	14	8
AATACCAAAAAGCGTG	alt_2349_reverse	11	25	16	23	19	13	29	9	27	19
CTTATACGCTAACTAT	alt_2349_reverse	1	3	7	4	3	6	3	7	6	9
TTCGCCAACAATCGGT	alt_2349_reverse	86	120	101	99	130	83	160	87	125	75
GCACCCATCGGTGGGA	alt_2349_reverse	15	19	5	17	18	11	14	15	22	12
CAGGCCGCGTCAAGTC	alt_2349_reverse	11	27	20	22	23	17	14	11	15	16
GGGGCGTTCGATTCCA	alt_2349_reverse	10	17	20	15	11	13	10	12	11	8
CGGGTCAGCTTTAGTG	alt_2349_reverse	20	40	19	25	32	33	27	25	38	29
CCGCATGTATTAGGAG	alt_2349_reverse	1	10	11	5	9	5	7	11	9	7
CTGCGCTATATTAGAC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TTAACGGGGTAAGAGA	alt_2349_reverse	26	48	34	25	38	25	41	15	48	21
GGGTATGCGATTTTTT	alt_2349_reverse	248	298	291	238	340	234	372	214	353	210
TATGGCTCTGACATTC	alt_2349_reverse	17	21	21	16	25	15	26	22	27	20
TTATTCTGCTCCCCAG	alt_2349_reverse	11	46	15	10	44	10	43	9	54	9
ATGGCCCAGGCCGAAT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTGGTGCTCCGC	alt_2349_reverse	18	20	13	15	29	10	20	20	21	11
GTGAACCAAAGCCCAA	alt_2349_reverse	26	28	14	23	30	19	33	13	32	21
TGCTGCCGAGCAAGTC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
ATGATGAGCACCGCCC	alt_2349_reverse	57	87	70	61	91	57	112	42	99	59
GGGAGGGTGTGATGCC	alt_2349_reverse	93	96	85	78	91	67	101	59	111	87
CTTTCTAGGATGTGCC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CCCATGAAGGAGAGTA	alt_2349_reverse	7	17	10	10	22	10	14	12	20	17
CTTAGTTAACCGCTTC	alt_2349_reverse	9	15	6	15	25	9	19	5	20	9
TCTTATTACTTTTTCA	alt_2349_reverse	3	4	9	4	6	9	5	5	10	7
CCGTTTTCTCTAACAA	alt_2349_reverse	22	25	23	20	31	13	35	19	34	29
CAATTCTCCCCGCCAA	alt_2349_reverse	0	13	2	0	3	0	6	1	7	0
CACGTTTCCCTAAGGT	alt_2349_reverse	18	29	20	13	26	12	33	17	21	14
GCCTTTCCGTGATAGA	alt_2349_reverse	4	10	5	2	9	7	6	6	12	9
TTTACACGTAAAAATA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTGCTGGTCTAT	alt_2349_reverse	8	9	19	3	16	5	11	7	12	5
GGAACCACAAGTTTTT	alt_2349_reverse	1	1	1	1	7	1	3	3	1	0
CCGAACTGTGTTGTAA	alt_2349_reverse	72	93	82	60	88	59	104	53	129	61
GGGGTTGCTGCCCTGA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCATTAGGGTACT	alt_2349_reverse	31	47	33	30	48	35	50	33	39	37
CTTAAGCTGTAAAATT	alt_2349_reverse	20	18	22	17	11	16	15	17	21	14
TCCCCTTTTTCGGGAA	alt_2349_reverse	43	70	51	51	49	45	61	35	61	41
AGTTTCTTACCGACTT	alt_2349_reverse	25	29	30	16	21	21	33	18	40	15
CGATAATTGGTCGGGC	alt_2349_reverse	7	10	10	10	11	8	14	10	6	9
CGAGGGGCATGTGCTA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTTACTTAGGTC	alt_2349_reverse	30	19	33	23	34	19	15	23	37	27
TTTTTTCTCCATTATC	alt_2349_reverse	7	10	8	6	11	1	9	4	17	8
ACCTACGACACCAGAG	alt_2349_reverse	69	100	67	64	117	47	122	65	108	59
GCAAATGTCTTGGCAT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCAGAAGGCTTTT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTATCTATCTTAC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAGAACTCGAGCG	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGGAACTATCTT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CGTATCAACGGAATCC	alt_2349_reverse	7	8	10	12	18	14	7	8	8	6
GGCCAGGAACAATCTA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GACCTGTATCGAGGTA	alt_2349_reverse	10	11	12	14	18	12	11	17	25	13
GCATTGGCCGCCCCCA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GTCACGTGCTAACTTA	alt_2349_reverse	18	51	15	11	38	10	45	10	52	16
TGTTACATAGCCAACC	alt_2349_reverse	5	15	17	13	14	5	22	8	14	14
ATGGTTCGCAAATCTC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCTGGCCTTCTAG	alt_2349_reverse	16	157	26	19	160	21	222	15	202	19
TTGATTGTTCTCGGAG	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCACTTTTCCTTT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGGTCATGTTCGG	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CCAATATAGACCTGGG	alt_2349_reverse	11	31	17	17	32	19	38	31	31	14
GAATTCGAACGCATAT	alt_2349_reverse	9	9	12	9	13	6	13	9	12	8
ACGCCTTGTTCGGTTG	alt_2349_reverse	47	53	64	45	67	41	69	46	67	44
CTTCACGACCGTGCTC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
ACAATAATCGAACAAG	alt_2349_reverse	0	0	1	1	0	2	0	1	1	0
GTTCCTACGTGTATCT	alt_2349_reverse	6	3	8	3	1	3	12	5	4	8
CCATAGTTCTCTGCAG	alt_2349_reverse	0	2	0	4	3	2	0	0	2	2
TTCTTCAACTGGTATT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CATACTTCCTCTTCTG	alt_2349_reverse	31	48	48	23	39	23	36	27	43	22
CTTGTACCACGTATCT	alt_2349_reverse	30	56	64	40	50	35	78	43	79	42
AGGTAATCCCGTAAAT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCCATACTGCGAA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GAGCCTGTCATCTTGC	alt_2349_reverse	43	78	56	41	60	45	66	29	75	45
TTGTGAAAGATGCCCC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTCATACAGGGAT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCTTAGTGACCC	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGGTGATGGAACA	alt_2349_reverse	6	8	7	5	1	3	4	5	7	3
AAGTGTGAGGCGAGTT	alt_2349_reverse	48	60	37	30	60	46	44	22	42	39
TCCCTTATTCTCACTA	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTCGCGAGCACTT	alt_2349_reverse	0	0	0	0	0	0	0	0	0	0
GAACTGCGTCAGGACA	alt_2349_reverse	7	6	1	6	9	4	4	4	4	3
CGTCTCTTAGGTGACG	alt_1198_reverse	21	22	25	25	29	26	19	34	26	20
TGTTGGCCAAACATAC	alt_1198_reverse	37	67	58	53	76	53	64	47	79	33
TTGATTGAATGTATTT	alt_1198_reverse	52	62	58	41	46	41	39	46	46	43
TCCAGGCCTAAATTTC	alt_1198_reverse	26	39	24	23	22	25	21	24	31	18
TGACTGCATTCATTTC	alt_1198_reverse	46	29	40	33	26	24	26	35	25	27
GTTCTCAATGATCCAT	alt_1198_reverse	35	35	51	42	32	36	44	35	33	36
TCGAAGACACTTCTCT	alt_1198_reverse	39	33	61	49	51	37	37	38	41	45
TATTTCCAATTCGTTC	alt_1198_reverse	33	28	44	29	18	18	43	25	33	26
CGTGACAGCTGTTTCT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTATAATATTTCT	alt_1198_reverse	46	42	43	50	64	36	44	46	45	39
ACTTGTAGTGGATGTG	alt_1198_reverse	20	33	18	28	41	13	36	28	25	21
GTACGTGATTACAGGA	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TACTCTCGGTTGATCT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GAACTCTTAGCCCTCT	alt_1198_reverse	49	46	49	41	59	37	70	39	48	45
GTCACAAGTTTTCTGT	alt_1198_reverse	10	24	8	6	22	5	12	3	30	6
CCAGTTCTAGAACAGT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TAAGGATTTGGTTCGC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGTAGGTATGAAT	alt_1198_reverse	3	10	11	9	8	8	10	4	4	6
TCCTCCACAGACGGTC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
ATGTACGGGCTATAAC	alt_1198_reverse	62	63	65	58	51	60	50	51	81	46
TGGCTACCGCACATTT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CCCCAAAAACAGTTTC	alt_1198_reverse	5	10	4	9	13	9	16	6	18	4
CCCCTTTCGCGAGGCG	alt_1198_reverse	2	3	4	2	2	3	6	6	1	3
CATTTTGGCCATCCCC	alt_1198_reverse	12	24	29	14	18	19	20	10	18	14
TCGTACGGTTGATTGC	alt_1198_reverse	13	8	8	13	8	6	6	9	18	3
TCGCTCCCCAAAGCTT	alt_1198_reverse	6	11	4	1	8	1	15	7	18	4
CTATAGTATTAGTTGT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TTACATCCAACAACGA	alt_1198_reverse	53	49	54	62	63	57	40	54	72	57
ACGGTGCCGAGCGAGT	alt_1198_reverse	14	17	18	12	25	20	28	24	17	23
CGGATTCGCGCGCGTA	alt_1198_reverse	53	45	62	55	47	51	32	63	54	50
ACTGGTTCCCAGGGGG	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTCTCGTAAGATG	alt_1198_reverse	12	16	10	4	18	13	17	12	13	9
ATAGCCCACCGTCTCA	alt_1198_reverse	23	18	17	12	13	20	18	18	27	14
GCATCAATGACATACT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CCTGCTGTACAATTCT	alt_1198_reverse	3	10	3	9	11	12	4	6	3	9
CTCAGTCTAGGTTCAA	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGAGTTTAAGGC	alt_1198_reverse	28	24	44	40	34	37	28	40	31	29
CAGAGGGTAAGGTGCA	alt_1198_reverse	1	10	7	4	4	2	12	2	11	5
CTCGGTGTTCCCGTGA	alt_1198_reverse	33	33	28	32	31	33	38	45	37	22
TCGCATCGCTTTCGTG	alt_1198_reverse	1	2	2	1	4	2	4	3	3	0
AAGTTATGGATGCGGA	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTAAGCGTCTAGG	alt_1198_reverse	17	15	22	15	16	22	13	15	11	16
ATCTAACCAATCCGTT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GAATTTGCGCGATTAC	alt_1198_reverse	0	0	0	1	0	0	0	0	0	0
ATATTCTCCATGATTT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTCGGACTAGCAT	alt_1198_reverse	103	106	150	118	130	119	137	103	100	98
GATTTTGCGCGATTAC	alt_1198_reverse	226	243	262	329	307	273	323	232	280	175
TACGTGCCAAGAATCC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTCAAACAGACTT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
AACTCTTACATGCTAT	alt_1198_reverse	33	23	21	26	15	22	22	18	21	26
CAATACTCTTGCAATT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
ATACATTGTTTTACGT	alt_1198_reverse	54	95	81	75	95	44	68	56	95	49
AAACACCTTCTCATTC	alt_1198_reverse	15	16	23	27	17	17	12	19	11	17
TACTGCCCCATCTTGG	alt_1198_reverse	15	13	8	13	9	10	10	10	10	8
GAGACCCGACAGCAGC	alt_1198_reverse	239	217	295	252	191	225	230	175	228	207
CCGTGCAGTTGCCATC	alt_1198_reverse	297	314	357	314	330	335	294	266	316	269
GCGCACCTGAAACAAA	alt_1198_reverse	21	16	20	11	21	18	14	16	15	14
TATTGGTTGTCCCACT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
AAACCGCTGAGACTGG	alt_1198_reverse	21	15	17	17	13	6	16	15	9	15
TCTATTTCATCGCTGA	alt_1198_reverse	26	24	30	14	30	33	18	29	38	24
GCATTTATAGCCAGTC	alt_1198_reverse	33	36	34	34	34	27	39	35	27	43
GACCGGCTAAACACCG	alt_1198_reverse	60	58	74	55	75	51	92	61	67	53
CAGCTGCATACTGGTG	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCTGTAACTTGGT	alt_1198_reverse	128	177	151	118	180	123	182	113	161	113
TCAGGTCCGTTTCTGT	alt_1198_reverse	8	11	9	5	13	4	9	6	3	7
TTTCCTTCCGGATGGT	alt_1198_reverse	30	26	32	25	16	19	36	30	32	24
ACCGAGATGTTGTTGG	alt_1198_reverse	80	91	109	101	87	60	121	64	94	76
TTTGTGTCCGTTCTTG	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TCCATATGCTTGAGCT	alt_1198_reverse	23	36	18	25	24	18	36	16	52	17
AAATGTAAATAATAAT	alt_1198_reverse	19	16	18	31	14	27	14	18	19	17
CAGTGCAGTTGCCATC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GACACTCTGTTTTTGC	alt_1198_reverse	35	46	40	40	62	41	63	36	50	24
CTTGCGCAATCCTAGT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TAGGCCAATTATGTGA	alt_1198_reverse	38	24	35	19	48	17	24	19	36	26
TCTTGGCTCCTGTTTT	alt_1198_reverse	7	10	14	8	7	17	14	8	7	8
CCCGGCATCTCAATAA	alt_1198_reverse	97	101	128	127	90	79	97	89	112	102
CGGAGTTTTCCACCCC	alt_1198_reverse	16	5	6	9	10	10	11	7	9	3
TCGCCAAACTTGATGC	alt_1198_reverse	3	1	2	6	6	4	3	5	8	2
GGGGTTACGCTCGCTG	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CATGAAATGTAACATG	alt_1198_reverse	36	40	36	41	43	26	48	30	55	26
GCTACATTCAAGCTGT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTACGATTACCCG	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GGCGGGTTTTTGACCG	alt_1198_reverse	15	18	15	11	18	11	7	9	14	11
TGTGTTATTTAAGCTC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGCTCTCGGCTTA	alt_1198_reverse	68	55	68	52	46	62	51	55	72	56
CTTGCAGAGCGAGATT	alt_1198_reverse	59	40	44	48	52	44	50	58	54	35
TGATGACCACCTTCCC	alt_1198_reverse	10	12	12	5	10	1	13	9	19	7
CTTTGGCATGTGGCGG	alt_1198_reverse	30	33	36	44	31	25	37	33	37	33
AAATGCACTTAGCGAG	alt_1198_reverse	3	0	2	3	4	1	1	4	2	2
TACGGTAGTAGCTAAT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTGCTTCAGATC	alt_1198_reverse	29	32	43	24	41	30	40	25	34	22
GGATCGACCAGATGTT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGTTACCAATATT	alt_1198_reverse	66	94	83	58	70	55	62	64	82	59
CTTGTCTTGTCGTGCG	alt_1198_reverse	32	39	41	35	38	33	36	32	31	27
GCGATGCCCGGCAGCG	alt_1198_reverse	19	18	25	18	18	23	23	12	23	14
TATTTTCACGGGGGCG	alt_1198_reverse	15	35	28	20	26	27	24	20	23	17
TCGCAGTTGACCATAA	alt_1198_reverse	17	15	11	12	12	8	6	9	6	4
TGGACTCTCCTAGTCT	alt_1198_reverse	59	51	57	49	54	51	76	47	86	48
CGTCCCAAAGTTACAT	alt_1198_reverse	73	44	85	67	57	68	36	59	47	53
GACTTTTAGATATCTC	alt_1198_reverse	27	35	33	35	31	32	43	16	35	25
ACGCTATGGGCTGTTA	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCGCATGCTAGGC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCGATATGTTTTT	alt_1198_reverse	79	86	110	80	87	78	91	84	93	71
ATGTTTTTTTATGACT	alt_1198_reverse	5	8	9	14	4	4	8	2	3	6
GCGAGTGGTAAAATCT	alt_1198_reverse	12	17	15	15	18	15	9	21	11	7
CAATTTTAGGTAGCTT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TCATATTGCAGTGTAG	alt_1198_reverse	62	88	87	78	59	63	90	62	76	53
TACTTCACTCTTAATT	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGCCGGTCTGTAG	alt_1198_reverse	17	15	16	12	15	12	28	11	26	11
CATACACGTCTGTACT	alt_1198_reverse	8	6	7	5	10	5	12	5	4	9
GACAGTTCTTTTCCCT	alt_1198_reverse	82	91	98	68	88	91	114	81	110	59
CCACCAATACACATGG	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
AAGCCTGGGGCCTCAT	alt_1198_reverse	125	105	123	144	126	94	108	109	126	103
CGATAACCCAACGCTG	alt_1198_reverse	66	49	79	80	69	67	84	67	70	61
GGCTGCAATATTTGAA	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TTTGAATCTAATCTCA	alt_1198_reverse	46	64	59	58	47	47	45	48	57	41
CAGCTATCTTGGATAA	alt_1198_reverse	17	17	18	16	19	7	17	6	14	9
TTATCTGTCACTTTAG	alt_1198_reverse	5	9	9	14	3	9	22	11	17	6
GGGTATTTCGTCGGGC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGCACAAACCATT	alt_1198_reverse	61	63	61	85	59	63	75	62	83	60
GATATTGCGCGATTAC	alt_1198_reverse	0	0	0	0	0	0	0	0	0	0
TGTACATCTGCTATGT	alt_396_RC	54	44	65	66	46	46	58	40	62	39
CATCCCTGTCGCGTCG	alt_396_RC	15	22	28	36	20	12	29	22	25	25
CATTATCGCTCTGGCC	alt_396_RC	254	242	312	281	287	256	348	233	270	197
GGTTAGCATGTCTATG	alt_396_RC	4	26	13	7	12	13	14	5	15	13
GTTCGTTTATATTATC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TGTAACGGTTGCTTTA	alt_396_RC	4	5	10	5	3	6	9	6	12	2
TGGAGTTATACGCTTT	alt_396_RC	1	1	1	3	0	2	2	1	3	0
CAAACCCTGTAAACAT	alt_396_RC	77	77	79	63	66	70	69	79	86	71
TCGTTTATATTCCTAT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
ATCTGGCTTGAACCCG	alt_396_RC	248	228	333	268	252	294	279	255	306	207
GTTTTATGGTTGATCC	alt_396_RC	27	21	30	32	38	28	23	18	38	20
GGGTATCCGCTCGTGG	alt_396_RC	19	12	21	17	18	14	12	9	20	15
ATCGTTATACACTACT	alt_396_RC	141	128	180	129	130	125	149	127	132	140
ACCCTCTGCCAGCTTC	alt_396_RC	91	73	97	82	90	88	84	81	108	78
CGTGTGATATTATGAT	alt_396_RC	2	4	0	2	2	2	4	1	4	0
GTGCGTCTAATATAAT	alt_396_RC	26	39	23	27	29	32	34	22	27	26
ATGGTGTGCCTATATG	alt_396_RC	7	22	9	10	9	8	7	13	8	17
AACTTTTTTTAGCATC	alt_396_RC	101	76	107	104	84	80	87	95	101	86
GATGACGTGGGAATTC	alt_396_RC	60	39	49	49	38	44	47	55	46	38
TCCTGGGTCGAATCCA	alt_396_RC	7	11	17	13	16	7	8	7	11	8
GAAATTTGTCGCTCCC	alt_396_RC	353	337	369	304	309	303	365	314	359	344
CGGTAAATGTGGTAAT	alt_396_RC	16	23	32	21	23	20	14	15	7	13
TCAGTATGTACCTGTG	alt_396_RC	25	19	17	15	23	20	28	21	23	11
AATAGGTCGTAGTTTT	alt_396_RC	31	34	37	45	30	33	30	46	43	38
GGTGTCACATGTAATA	alt_396_RC	51	41	40	59	65	43	36	39	58	60
TAATATCCGTCAACAC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GCTTACTTTCTTCGTC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CGCATGTGCGGAACTA	alt_396_RC	110	97	118	118	85	91	94	88	81	112
ATTGCTGGAAGCTTTG	alt_396_RC	38	35	47	43	38	41	38	42	42	45
TGGGTAATCGGTGATT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TCGTGACTTTAGGGAC	alt_396_RC	27	28	41	40	36	41	44	29	37	26
CATGTGGAACGCTCAC	alt_396_RC	27	34	35	29	40	28	46	43	35	27
TATAAAGGAGGTACCT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TAAGGTAAATGCTTCA	alt_396_RC	82	55	63	65	61	42	54	65	64	55
TATTTCCTCCCGTGTA	alt_396_RC	6	7	7	7	9	4	4	3	7	6
AAGGCAGTGTTTGTTT	alt_396_RC	37	37	47	32	42	34	34	25	43	31
AGGTAAAGTTACTTTT	alt_396_RC	36	31	27	28	28	30	28	22	27	22
CCTCCGATTCCGTTTC	alt_396_RC	26	32	26	26	26	28	16	28	22	25
GACAGACCTTTCTACA	alt_396_RC	30	38	31	18	30	23	25	25	34	19
AGTTTTCCCGGATTTG	alt_396_RC	72	78	73	54	86	55	68	56	73	68
AAGCGAAACCCTGTGG	alt_396_RC	25	14	36	20	33	20	31	17	26	31
ACGAGAGTTTTTGCTC	alt_396_RC	63	48	50	59	61	45	53	46	57	55
ATTTCTTTCATGTAAA	alt_396_RC	13	21	24	20	22	11	23	20	16	15
CTATTTTCTGGATTAT	alt_396_RC	291	380	351	307	403	291	417	263	412	275
CTTTGCCTCCGGTCCG	alt_396_RC	100	120	112	111	128	102	126	95	119	82
GGAATACTCTTGGCCT	alt_396_RC	2	3	7	3	2	1	3	4	4	0
CGGTTGATGACGCTAT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TTTAAAGGAGGTACCT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GCTGCACGTGAATTAG	alt_396_RC	14	33	24	17	17	12	26	22	24	13
CCTGGTATGTTCTATA	alt_396_RC	10	12	22	5	17	14	14	10	20	12
TACTCCTCTAGAACAG	alt_396_RC	0	0	0	0	0	0	0	0	0	0
ATATATGATCTCCATA	alt_396_RC	43	35	46	27	41	25	31	32	39	41
CCGAGTGTGTGCTTAT	alt_396_RC	0	3	2	3	3	5	8	4	5	4
TCATTACTTAAGTACG	alt_396_RC	11	8	18	16	20	8	14	16	11	12
ACCCTCACACGGTCCA	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CGTAACCACGCCCCGC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
AGCGTGCAAGAGTGAG	alt_396_RC	7	12	13	12	9	7	7	7	7	11
ACCATCGCATGCACCC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TGTATTCAAATCTTCG	alt_396_RC	76	78	93	65	70	71	71	62	55	56
CTTAGAATCGTTGCGC	alt_396_RC	22	9	16	7	27	14	13	6	17	11
TCGTAGGAGCATTCAA	alt_396_RC	56	45	67	41	42	56	55	53	68	43
ATTGCTCTAGGCAACT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TGCGAGGGGAGACAAT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TAGTCATGCGTTCCAT	alt_396_RC	38	32	37	32	36	26	40	20	42	40
TGTTTAACTCTCTGAT	alt_396_RC	16	20	18	16	15	22	16	18	21	9
TTCTTGGTCAGAGATT	alt_396_RC	19	31	35	17	34	31	31	24	37	19
GCTATGATTTCATCCT	alt_396_RC	61	69	62	63	47	47	43	58	49	45
TACATTGGTGCGCCAT	alt_396_RC	11	14	13	17	22	10	18	13	18	16
CCTGCGGAGAGTCACG	alt_396_RC	44	32	42	31	32	36	37	38	44	43
TCTAAATCGGAAGATG	alt_396_RC	13	15	15	15	4	10	12	17	10	10
CGGGCATAGCTTACCC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CATTGGGGGATGACAC	alt_396_RC	13	13	19	4	15	16	14	9	12	16
AATGTATGTGGGTAAC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GCTCGTGGTTGACACT	alt_396_RC	28	40	49	33	41	31	49	28	32	24
AGCGTGAAGCGCCAGT	alt_396_RC	10	9	12	10	7	10	4	13	16	6
AGGGCTATAGTAGTAG	alt_396_RC	0	0	0	0	0	0	0	0	0	0
ATTCTTATCCTGGGGA	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GTGGAAAATTTGGGCC	alt_396_RC	24	14	19	17	9	17	19	11	22	13
CTGGGATCGCCCACAG	alt_396_RC	13	19	22	14	18	17	15	19	13	15
GGGGGGTGCGGAGCTC	alt_396_RC	77	57	107	83	66	79	72	75	56	66
TTTGTTGCTTTATATA	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GGTTAGTCTCGTCGAT	alt_396_RC	71	92	102	74	75	64	91	74	70	70
CAGGCTCAATTGCCAT	alt_396_RC	1	1	0	0	1	0	0	0	0	0
AAAACCGTCCGGTATC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
ATTCGAAGTACGGTCG	alt_396_RC	49	68	91	71	72	55	72	67	80	56
TTACCTTTAGTAGTTT	alt_396_RC	84	607	86	79	595	66	625	55	628	64
GACAAAGTTCCAGGAC	alt_396_RC	36	41	39	31	54	39	56	27	38	29
CTATTGAGTCATGGGA	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GCTAGAACCTTTTCCC	alt_396_RC	25	17	14	18	26	17	20	21	24	15
ACGCGTTATGTCTGCG	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCAAGGATAACG	alt_396_RC	12	17	9	16	15	14	20	6	14	13
TTGGTAACCGTTGTTA	alt_396_RC	31	36	22	40	40	24	43	26	51	24
CCTTTAGTACAGTCAT	alt_396_RC	12	11	21	16	21	20	27	16	22	24
GGCATGGGTCTATGGC	alt_396_RC	34	28	42	27	21	30	30	26	35	22
TCTCTCAATACCCAGT	alt_396_RC	125	113	133	111	122	106	127	118	128	102
AGTAATTTTTACGGGT	alt_396_RC	31	15	30	31	20	22	32	25	30	19
GAACTTGAAGGCGGCT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GGTTAGGACGAGTGAC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
ATGTATAACTCGGCGT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
AGATGTTCATAGCTTA	alt_396_RC	27	18	17	20	30	15	21	18	15	14
ACCTGACAAGCAAGTA	alt_396_RC	18	19	25	18	20	27	21	19	19	14
CAACCTCGACCGGTTG	alt_396_RC	4	1	1	1	2	2	5	2	5	5
TTGATGATGCTCCATA	alt_396_RC	7	12	14	16	7	10	24	11	17	8
ATTACTGGCTGAGACT	alt_396_RC	50	29	51	51	34	32	32	35	40	40
GATGTTCTCTGTTTGC	alt_396_RC	13	3	18	7	6	7	5	7	8	9
TGGTATCTTCTAGCAT	alt_396_RC	135	133	170	131	130	108	115	133	152	112
CGTGCTACTGGGTATT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GCACTACGCTTCAAGG	alt_396_RC	6	1	9	12	14	7	11	7	6	5
CGCCTGGCCCCCCAAA	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TATCGCGTGTGGTTTG	alt_396_RC	18	10	30	27	25	31	21	20	23	13
AAACTTGTATCCCCCT	alt_396_RC	92	51	93	83	72	105	62	74	74	80
GGAAGGGGACATCGGA	alt_396_RC	37	15	39	11	28	32	23	30	29	19
GGGGATGCCGGCGATC	alt_396_RC	122	108	168	159	140	151	144	152	132	128
ACGCGTAAAATCTTTA	alt_396_RC	89	96	123	92	87	76	79	61	82	56
CGTTAGCCGTTAGAAT	alt_396_RC	2	3	3	2	2	1	3	0	0	3
CACTCATGCTCATGTG	alt_396_RC	50	73	47	69	50	31	49	50	48	52
GTTGCCGAGAGTAGGT	alt_396_RC	81	105	120	98	95	80	119	91	109	84
TACCGTGGTTTCTCAA	alt_396_RC	12	15	22	18	26	7	17	9	23	11
CCGGGTGTCGTCATTA	alt_396_RC	82	105	92	94	131	85	115	94	126	74
AATGCTTTCTTGCACG	alt_396_RC	28	28	31	31	24	34	37	22	24	25
ATATTGTACTCATCCG	alt_396_RC	23	18	17	18	22	10	19	19	16	18
CTCGGAACCGCTCTGT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CTGACTATTTGACATG	alt_396_RC	49	70	67	65	79	74	86	61	91	70
ATACCTTTAGTAGTTT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
GGGGTCTGTCTGCCTC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
AACCGCTTCAGCCCCC	alt_396_RC	0	0	0	1	0	0	1	0	0	0
ACGGAGCTACGCAGGG	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CAGTACCATCACTTTC	alt_396_RC	0	0	0	0	0	0	0	0	0	0
ATACACCAATAAGCCT	alt_396_RC	182	252	215	184	235	199	241	172	251	170
ACGTATGGTATTCCCT	alt_396_RC	101	86	132	99	94	93	94	112	104	96
TGCTCGCTGGCTAGTA	alt_396_RC	21	20	23	13	11	13	16	15	25	8
TACATCCCCACGTTGC	alt_396_RC	2	4	1	4	4	0	12	3	6	6
CACGGTTTTCTGGAGC	alt_396_RC	2	7	2	3	8	4	6	1	10	6
GCCCACTTCTGGTCAT	alt_396_RC	77	93	102	91	88	78	70	73	91	74
CGCAGTCCAGGCATTA	alt_396_RC	25	25	29	22	15	22	32	19	16	23
GTAGTTTACAGTTAGA	alt_396_RC	24	32	29	26	27	26	28	27	25	15
GGTTGACTATTTCGTG	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CAGTCTACTCCCTCAG	alt_396_RC	2	4	2	3	6	3	4	4	6	6
GGTTATCTGGACCATG	alt_396_RC	12	15	18	15	20	16	23	11	20	4
CCAATTCGACCATTCC	alt_396_RC	32	40	29	51	46	28	36	32	45	20
CTCAGTCATTATACGA	alt_396_RC	0	0	0	0	0	0	0	0	0	0
TTGACCATTCGGTGTG	alt_396_RC	29	35	45	31	32	28	21	24	30	25
GTCGTATCGATTTCAA	alt_396_RC	32	38	32	38	43	42	37	36	43	37
CTATTTCACCACAATG	alt_396_RC	33	41	68	47	45	35	53	44	36	44
GGACTTGCAAGGTACG	alt_396_RC	33	23	46	33	21	34	15	40	21	36
TACAGAATTCGGTTAT	alt_396_RC	0	0	0	0	0	0	0	0	0	0
CGGCATCTCGCATATA	alt_5336_RC	13	10	18	13	6	15	12	8	14	13
TGAGTGCATCACCGGT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
TCAGATCACAGTATTG	alt_5336_RC	143	115	155	125	132	134	179	119	168	116
TCTTGTTTAGGGGAGC	alt_5336_RC	60	75	54	47	63	36	67	50	55	66
CAATGTTCGTCCTCAA	alt_5336_RC	61	56	48	50	76	45	48	58	61	46
GCTGGCATTCCAACCC	alt_5336_RC	22	25	17	25	21	15	26	18	24	24
AAGTACCCGTTATTTA	alt_5336_RC	40	41	52	52	44	46	54	37	41	39
ATCTTATGTTTTTGTT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CCCCTTGAGAGGTCTT	alt_5336_RC	30	18	39	31	37	27	19	18	30	22
ACCGTCGTATCATTTT	alt_5336_RC	4	2	7	7	9	3	8	2	6	3
CGGCTCCTACCGGCTG	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GTACGCTGGAACATAT	alt_5336_RC	13	9	17	12	18	15	16	14	18	9
TTTTTTAGACATCGTA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CCAGCACTGGGTGATC	alt_5336_RC	96	141	148	135	130	118	135	89	145	96
TCTGCGGACGAGAATG	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CAATTCTCCAGGGATT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CTTGAAATTTCAATTG	alt_5336_RC	126	119	122	129	124	113	104	89	124	94
CCCGGTCGGTTTTAAT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GCGACCTAGCTCCCGC	alt_5336_RC	142	161	179	171	138	133	168	151	167	130
CTTTGTGAACACTCCA	alt_5336_RC	60	80	52	40	80	55	76	51	91	56
ATGTCGGATGTCGCAG	alt_5336_RC	24	18	25	27	16	25	10	27	19	19
TCACGGACCGCGCTAT	alt_5336_RC	106	99	102	105	104	88	109	103	98	83
ACTCGCGGCCTGGCGT	alt_5336_RC	37	47	57	49	43	35	34	44	51	37
CTCTATTAGGAAATAG	alt_5336_RC	48	35	51	55	65	38	46	40	53	61
TCTCTATTAGTTGGCT	alt_5336_RC	31	31	45	38	53	31	45	33	43	25
TACTTGCTGGGCATCG	alt_5336_RC	17	16	22	20	19	15	14	16	17	18
ATCCTCTGGAAAGCTT	alt_5336_RC	19	17	26	17	17	16	21	8	18	16
TACTCATGCGTCATTG	alt_5336_RC	3	12	7	6	8	2	5	4	4	4
CACCTTCTCAGATTTT	alt_5336_RC	7	19	14	11	16	12	13	23	12	14
ATTCTCGTGGTTTAGC	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CATTTCAAGCTCGTCG	alt_5336_RC	34	39	60	36	42	26	47	35	48	29
ATGCCTGTGTGCCTGT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GGACCTCGCTTGCGCT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
ACTTTAAGTAGTTAAG	alt_5336_RC	46	50	57	60	59	41	60	27	61	37
GCGGTTCGGGTAGCCT	alt_5336_RC	46	31	45	46	61	41	50	36	46	42
GTCTGCCTCATACAGC	alt_5336_RC	35	38	44	32	36	36	41	30	43	25
TGTAGTGAGCGCCACC	alt_5336_RC	1	0	0	0	0	0	1	2	0	0
CTTAAGTCACGTGCTA	alt_5336_RC	20	19	18	25	16	23	24	17	30	21
CAGGGATTTGTTCCAA	alt_5336_RC	10	7	6	5	9	9	5	3	8	12
GATAAGGGAGATCAAG	alt_5336_RC	63	41	51	51	39	49	47	51	40	53
GGCGATTCGTATCAAC	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
TAGGATATCGAGAAGC	alt_5336_RC	4	1	11	5	6	9	7	6	6	6
CTCGTACTATTACCGA	alt_5336_RC	69	60	65	46	55	57	58	45	66	47
TGAATAGAATCGATGG	alt_5336_RC	1	5	5	4	9	8	5	6	9	4
AGTATACCTTCAGGTC	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
TCATACCTGTGATCAG	alt_5336_RC	14	31	28	30	43	14	28	12	38	19
TGTTTTATTTGTATGT	alt_5336_RC	11	14	15	14	24	17	27	10	20	16
TGGTTATTTCAGCTAT	alt_5336_RC	3	6	5	6	3	1	4	6	16	1
ACGGTCTAATCTCCCC	alt_5336_RC	15	33	16	16	34	10	49	11	29	9
TCGGGTAATGTCGTAC	alt_5336_RC	20	30	21	16	27	21	23	18	22	19
ATTACGAGGTCCGCTC	alt_5336_RC	42	55	57	62	82	63	69	55	69	35
AATGTATGGATGCGGC	alt_5336_RC	32	31	45	32	25	35	49	38	39	35
GGGCCGATGCCTGGAC	alt_5336_RC	6	2	4	3	5	15	6	9	9	2
GCACGAGACTTACCGT	alt_5336_RC	16	74	16	26	64	10	76	14	86	14
AACGTGCTGTGCCCAT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
TTTGGGCGCTGATAAC	alt_5336_RC	7	17	12	10	10	14	13	15	8	13
CGGTTTAGGATTATAT	alt_5336_RC	16	23	23	28	26	19	23	21	32	28
TCTCATATTTCGCGCT	alt_5336_RC	27	32	39	26	42	33	37	24	34	28
TAGGCTCTCCAGTCAT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GAGGATAGAAGGCTGA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
AACGTATGTACAACCA	alt_5336_RC	185	184	190	146	168	155	161	166	207	148
CCAAACATCTTCCGTT	alt_5336_RC	6	21	21	11	23	11	22	13	28	1
TAGATCTTATCATTTA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CCTCTGATCGTTAATT	alt_5336_RC	55	73	83	70	66	78	86	58	69	73
AGGTTCAGTATCGGAT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
ATCTTGCGGGCACTTC	alt_5336_RC	168	197	211	185	213	179	198	189	193	193
TAAAGCAGCCTTCAGC	alt_5336_RC	13	5	9	5	11	8	17	12	8	4
CTATTTTATGTTAGGC	alt_5336_RC	10	9	14	11	8	12	18	12	13	7
ATCTGAGGCATTACAT	alt_5336_RC	5	16	14	9	12	8	16	14	10	10
GTTTAGTTTATCAGGC	alt_5336_RC	157	117	147	109	134	125	147	120	141	120
CAACTCCATATACGAT	alt_5336_RC	11	10	6	8	14	4	18	7	4	4
GTGGTGTATTTCCGCT	alt_5336_RC	59	66	82	58	52	63	60	48	61	50
CCGCTTTGTTACTTGT	alt_5336_RC	3	3	4	2	9	1	3	3	5	3
GGACATGGGATTGAAA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GCATCCCCCCGATCTG	alt_5336_RC	5	9	3	3	6	3	2	3	6	2
TGATGATCACCGGATT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CTGTGTTATTCTTATG	alt_5336_RC	4	6	10	8	15	11	5	9	10	5
CCACCGACTCATGGAA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
AGATCCGCTCCGGACT	alt_5336_RC	21	24	39	33	21	25	25	23	34	20
TTAGTATTCGTGCATG	alt_5336_RC	35	30	36	28	26	27	38	31	40	33
CATATTGTTACCGCGT	alt_5336_RC	67	81	79	68	85	90	88	55	110	73
CTCAGTGGGAGCCAGC	alt_5336_RC	63	63	75	93	73	74	65	82	79	70
ATAGTGATTGTCCTAC	alt_5336_RC	0	2	1	0	3	1	3	0	0	0
TGCCTCTTAGATTCTT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GGTACATCGGGTCTGA	alt_5336_RC	57	68	68	65	59	52	60	63	92	47
GTTAATTAGCAGTTCG	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GCTTGACTCATCGGAC	alt_5336_RC	2	3	2	6	7	3	7	3	2	3
ATTAGGCCCAATCTGA	alt_5336_RC	50	48	75	43	41	46	56	43	47	48
TAAGTTCCAGCATGTA	alt_5336_RC	104	143	141	116	107	109	129	97	129	93
TAAAACCAGTTTTAGT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
TGACTTATAAATTGCT	alt_5336_RC	28	27	27	29	30	25	37	27	36	21
GGCGTTCCGATGTTTT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CGCTTTCCATCGTATG	alt_5336_RC	5	2	10	8	4	6	16	6	8	9
GCTAGGCTTATCTGAT	alt_5336_RC	148	159	172	133	186	129	186	137	187	122
CTAGTTTTGGTGAGTG	alt_5336_RC	30	37	36	32	46	28	39	21	36	25
TGTCTGATTGTGCATC	alt_5336_RC	5	7	8	9	8	4	6	5	4	8
GTTAAACCTAAACCTC	alt_5336_RC	24	15	20	12	18	19	21	24	23	16
GGCGATATTAGCTTGT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GTCTTAGACGAGTACA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTAAGACCCGGC	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GCTGTCCGCTTGGGAA	alt_5336_RC	5	2	5	1	4	6	5	2	0	3
TCTTTTGCCAGGTTAT	alt_5336_RC	71	51	67	61	59	44	62	40	66	53
GTGTGGATTGATAACC	alt_5336_RC	17	17	25	21	15	18	20	15	12	21
TCGGGAAGGAATTGTG	alt_5336_RC	1	7	9	3	4	4	3	2	2	6
ACTAGCTGTTTGTTTT	alt_5336_RC	14	29	15	24	21	28	29	11	19	13
TGCCTTTGGTTATCAC	alt_5336_RC	12	12	19	7	20	13	21	18	27	16
GTTCTTCCCTTTATAA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
TACATCCTTATATTTT	alt_5336_RC	15	19	25	25	16	16	15	14	20	18
TTATATGAAATCCGAC	alt_5336_RC	15	13	18	16	11	13	18	19	18	17
GTATTCCTGACTGCGC	alt_5336_RC	6	10	8	2	10	5	12	2	12	5
AGAGTGGAGCGGCCCT	alt_5336_RC	45	24	36	32	34	24	35	47	27	22
CGCGACGGCAAGTATA	alt_5336_RC	86	66	86	63	63	65	79	60	86	81
TTTCTCACATGTGGGC	alt_5336_RC	24	18	32	17	24	12	17	14	18	11
CGCTTCTTCCGGGCTG	alt_5336_RC	4	6	6	3	5	6	6	5	4	7
ACTGTCCGGGTCCGTC	alt_5336_RC	17	15	25	17	19	9	20	13	18	9
TATGTGCGGATTACTA	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GTCGCACTTAGTGTCA	alt_5336_RC	27	30	39	25	25	27	37	27	43	38
AAAAAGGTATCACACC	alt_5336_RC	97	77	89	102	80	106	109	68	105	84
TCCGTTCCCTTTTTTA	alt_5336_RC	98	129	128	117	132	74	132	80	134	93
TCGTGGTGAGTAAGCG	alt_5336_RC	16	6	9	12	4	6	10	9	12	10
CCGATGCGCATTTCGT	alt_5336_RC	32	26	28	13	46	32	27	33	35	32
AATCCTCCTTGGAAAT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
CCGACCTCCCAGTTTG	alt_5336_RC	0	2	2	4	3	0	2	1	1	2
TAGCTTCCATCGGGGC	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
GCACGCTATGGCAGCC	alt_5336_RC	13	11	18	10	5	21	11	12	9	17
AACCGTCCTTCCAGCT	alt_5336_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTTATATACCAC	alt_5336_RC	4	2	7	5	5	2	6	5	8	4
TCAGATCCTTTGTAAT	alt_5336_RC	81	97	79	81	101	76	100	75	94	78
ATGTCTGATAATTCTT	alt_5336_RC	37	30	50	41	24	37	37	19	46	26
CGCCTTCCTATTTGCC	alt_5336_RC	20	18	28	28	20	24	17	25	28	20
GAGGGGGCTCGAACGT	ref_6056_new	52	40	40	55	44	58	32	41	31	42
AGCATAGACATCCGAC	ref_6056_new	18	19	33	24	22	25	16	26	31	21
GTTGAAATCTCCTATA	ref_6056_new	96	85	117	100	82	93	102	95	72	98
TTTTTTTGAGAAGCTG	ref_6056_new	213	302	311	249	277	244	291	220	285	219
ACTTGAACGTAATTAC	ref_6056_new	3	5	7	2	5	5	5	3	2	2
CACTTGGCGTGGAGCA	ref_6056_new	25	37	34	32	37	24	33	28	26	27
GGTCGGAGTTTTTTTG	ref_6056_new	52	48	46	38	60	42	63	39	58	42
TCTAAGGGACGTGTAG	ref_6056_new	241	227	272	247	190	254	264	170	216	202
GTTTGTTACTGTACTC	ref_6056_new	17	13	22	10	10	20	12	17	14	11
AGCTAAGCGACGCGCT	ref_6056_new	18	16	18	16	32	11	23	22	20	18
TTATGAAGCCCAGACG	ref_6056_new	9	13	17	15	18	7	16	9	14	13
GTTTCTGCGAACGACG	ref_6056_new	27	18	29	26	21	16	15	16	13	16
TAGGCCGTTTGTTGTT	ref_6056_new	57	72	66	78	67	57	79	61	70	42
CAATTGTCAGGCCTGG	ref_6056_new	14	14	14	21	11	24	16	17	14	19
TTGCCTGCGATCACGG	ref_6056_new	6	10	15	8	12	5	16	14	18	7
CGGAATATCTCATGCT	ref_6056_new	68	54	89	44	71	81	65	41	75	52
ACGCGATTGCGTACCC	ref_6056_new	4	7	12	11	8	7	3	4	7	6
TATTTATGTGACTTAC	ref_6056_new	33	38	28	25	22	29	18	26	27	19
ACTCCTGAGTTCAGCG	ref_6056_new	16	23	16	28	22	19	30	15	28	19
GTCCGTGTGGTAGGAC	ref_6056_new	37	48	43	50	42	35	42	34	37	74
AGCAATCTACGTTCTT	ref_6056_new	210	187	251	186	193	181	217	187	188	223
CTTCATGGTATATACC	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GCTCCCTTACGCTGGT	ref_6056_new	39	43	54	36	44	34	29	22	57	31
GGCAAAATGAGTTCAC	ref_6056_new	4	4	3	3	1	3	3	2	1	2
ACTACGTGCGTACGCG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
CTTGCTCCATCGCTCT	ref_6056_new	11	12	19	10	22	19	15	14	14	19
ATTGCCCCCAGATGTG	ref_6056_new	23	16	27	23	17	27	25	20	25	20
CGGTAGTACCTTGGTT	ref_6056_new	215	229	261	198	218	194	217	187	240	191
CTGATTATTGTTCTGC	ref_6056_new	75	94	92	68	71	71	87	96	90	73
TTATATCCGAAAAACG	ref_6056_new	32	32	34	39	30	34	33	35	42	33
ATTTTGATAAAATTTA	ref_6056_new	15	17	18	18	18	16	19	17	25	13
ACATGGGTTCTAGGAA	ref_6056_new	0	0	0	0	0	0	0	0	0	0
AAATACCAAGGCATGG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
CGCTGTCCCGGTTTCA	ref_6056_new	10	28	20	23	28	16	30	31	43	20
TCTTTACTCTCGGGTG	ref_6056_new	42	47	42	43	46	31	40	40	52	35
CTTCTATGCGGGGGCG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
TGGACTGGACGTACCT	ref_6056_new	36	55	47	37	69	37	60	22	63	33
CTTGACCTCTGCGCCT	ref_6056_new	136	132	149	122	132	90	137	114	141	100
AGCGCCAGGGGCGTTC	ref_6056_new	22	27	22	21	21	11	23	20	19	13
TTAAAGTTTTACACGG	ref_6056_new	42	53	61	52	54	54	37	43	52	46
ACGTGCCCTGTGAAGT	ref_6056_new	7	2	1	2	7	4	2	5	2	1
ACTTACGTCAAGTGGC	ref_6056_new	5	8	3	6	13	5	9	3	5	10
TTGCTTACTGTGTGCG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
CCCGGGTCATCGGGTT	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GGCACACGCCCTTGTT	ref_6056_new	21	52	43	38	43	27	39	42	49	36
CAGCTCTTGGGACTCC	ref_6056_new	3	8	7	2	13	3	6	3	8	1
TTCTTCCGTAAGTTTG	ref_6056_new	50	62	78	66	57	38	81	74	74	52
CAACGGCATTGGTATC	ref_6056_new	31	15	39	33	27	25	23	30	34	32
ATCGTAGCCCTGATTA	ref_6056_new	46	39	45	43	43	38	52	38	51	47
TAACTGAGTTAACAAA	ref_6056_new	5	12	8	7	6	10	8	6	5	8
TACCGCACTTGTGCGT	ref_6056_new	33	31	39	35	32	36	34	41	22	41
GAGGGACTGTGATCCC	ref_6056_new	90	84	113	94	103	83	90	61	97	80
CGTGCAACCAGTCCAT	ref_6056_new	11	10	17	21	14	10	5	10	10	12
GCGTTAGATAGTTTTT	ref_6056_new	35	31	48	33	34	23	39	43	40	34
GTTTCTCACGAGCCTT	ref_6056_new	1	0	0	1	4	4	4	1	3	0
CGTGTCCATTTCCATT	ref_6056_new	3	7	7	6	6	7	11	6	7	5
TTTACCTTTTAGTATT	ref_6056_new	38	41	35	47	27	39	51	27	49	39
CACCGTTAAACACTCT	ref_6056_new	42	27	46	39	44	36	25	32	33	40
GGTCATGCGTCGCATC	ref_6056_new	101	88	96	84	65	75	61	70	67	71
CGGACTCGACATCATT	ref_6056_new	0	0	0	0	0	0	0	0	0	0
CACAGTTGGTAGTAAC	ref_6056_new	38	39	40	29	52	34	43	37	45	42
TTCCAGATTGCGCGCT	ref_6056_new	4	6	7	6	6	3	10	7	6	6
AAGTACTTGGGGCTAG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
AGTAAATGCTCCGTGC	ref_6056_new	63	68	98	70	60	64	80	56	63	47
TTGTGGCATTACTCGA	ref_6056_new	115	87	130	110	107	109	115	113	89	91
CCGTACGATTCTCCGC	ref_6056_new	16	19	9	17	19	11	17	13	17	14
CACCTCTGTCTTGTAT	ref_6056_new	0	0	0	0	0	0	0	0	0	0
TAGTTCCATTACTACC	ref_6056_new	102	113	127	109	126	112	108	102	131	86
TGAACTTATCACGGGG	ref_6056_new	20	23	33	39	33	37	28	32	33	35
AGATCCCCTCGCATAC	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GCCGAGGTTACCCTTG	ref_6056_new	16	8	19	11	10	7	16	10	11	14
GGTATCTATGGTCCAC	ref_6056_new	33	43	45	39	41	29	56	39	37	29
TTTATCAATTTTCACG	ref_6056_new	23	22	60	35	32	30	32	24	38	25
CATGCAATATCCTTGT	ref_6056_new	27	42	36	30	29	30	42	29	29	32
AGTAGATTTTAGGTTT	ref_6056_new	57	62	91	62	55	50	63	52	59	57
CGAGTCGTGATGAGTG	ref_6056_new	25	21	18	19	26	17	20	16	24	15
TCCACTGTTTCCGGCT	ref_6056_new	134	135	127	100	128	107	161	85	150	98
TGTCCACCCTTCGGAC	ref_6056_new	88	67	90	83	69	65	87	69	70	83
TTTGTCATTACGCATA	ref_6056_new	0	0	0	0	0	0	0	0	0	0
AACTCAGTACTATGTA	ref_6056_new	0	0	0	0	0	0	0	0	0	0
CGCTATAGATATACAG	ref_6056_new	44	41	70	53	51	57	61	38	52	41
GTTCCTCGTTACCGGC	ref_6056_new	0	0	0	0	0	0	0	0	0	0
CTCCTAGGTGCGAAAC	ref_6056_new	0	0	0	0	0	0	0	0	0	0
ATACCTAGCGTGTTCG	ref_6056_new	50	46	43	41	43	47	40	49	40	31
GCAAGCCTACTTGCCT	ref_6056_new	30	48	41	40	32	37	69	40	43	29
ACAGGCTAATTGGACG	ref_6056_new	44	41	58	31	42	54	57	40	27	47
GGTGTACCTCAGATGT	ref_6056_new	24	36	24	33	31	27	39	23	40	31
ACCGCACCGGCATGCG	ref_6056_new	13	12	12	14	19	7	11	14	6	10
AGGGAGCTTGTAAGCA	ref_6056_new	163	156	193	188	175	169	181	175	187	140
CGACTTTGACTGCCTT	ref_6056_new	71	64	92	65	66	61	70	69	78	45
ACCTTTTCGGACTCTC	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GTTCATAGTCTTTATC	ref_6056_new	29	33	30	33	33	27	29	29	40	33
CAGAGTTTAAGGGAGG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GGCTATAGATGATTAT	ref_6056_new	15	14	10	19	12	14	20	8	8	16
TTAGTTCAAACGCTCG	ref_6056_new	73	74	88	82	88	115	77	73	98	63
GTTTAGATTATGTCCG	ref_6056_new	17	15	15	23	7	12	16	17	10	14
TTGAATGTCGCTTTCA	ref_6056_new	106	78	112	105	79	91	125	82	96	107
CCGTACATGGATGCTG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
TGTGATACCAATGCCG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GTGAGGGCAATTTATA	ref_6056_new	46	28	38	28	37	33	43	23	34	31
TTAAGCTAATCCCTTT	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GCACGCCGAAGTGACT	ref_6056_new	0	0	0	0	0	0	0	0	0	0
GATCAGACTCATTGTG	ref_6056_new	48	93	63	42	70	46	63	57	51	55
TCGAGGACTTCCTCGC	ref_6056_new	11	19	26	18	14	15	14	19	19	15
GTATAGGTAGTCAATT	ref_6056_new	37	41	52	40	40	42	42	39	51	26
GTTACGGTGCTTTTAG	ref_6056_new	19	19	21	24	26	19	26	16	23	21
TTCGTTCATCTTCGAC	ref_6056_new	25	21	21	26	19	18	22	24	19	21
GCGCGTTATGCTCGGG	ref_6056_new	0	0	0	0	0	0	0	0	0	0
TGCAGCGGAATCATCG	ref_6056_new	3	9	0	3	3	3	1	3	2	2
TGCCTTTTGCACCATC	ref_6056_new	6	6	2	6	5	8	11	5	7	12
GTTTAAGGAGTTTGCC	ref_6056_new	33	26	38	43	34	27	36	38	28	20
CTCACGGTTATTATGG	ref_6056_new	22	21	19	24	12	15	25	15	28	18
GGGCGTTTTGCATAGT	ref_6056_new	109	96	134	108	123	100	102	94	127	88
CATAGCGCTTCGTCTA	alt_1893_negative	23	35	34	8	39	9	29	16	28	14
ACTATGGGGCCTTGTG	alt_1893_negative	38	64	34	29	78	45	73	30	77	22
ATTGCGACGGGCAGAA	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
TTTTTGACCGGTTGAA	alt_1893_negative	5	4	3	3	7	1	8	2	8	2
TCCCGCAGATCAAAGC	alt_1893_negative	18	101	18	21	104	16	105	14	102	8
ATTAAGTACGGGTCCT	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
ATTGTTGCAGCGCACT	alt_1893_negative	6	6	8	7	15	8	20	8	9	3
TAGTGTTTCAGCGAAA	alt_1893_negative	63	147	81	76	172	60	127	65	161	53
CAAGAACAACTTCCAC	alt_1893_negative	18	19	16	15	17	17	25	17	22	23
GATAGCATACGCTTCA	alt_1893_negative	1	10	6	3	9	3	6	6	10	7
GTTCAGGTGGTTCGTT	alt_1893_negative	39	67	51	46	68	34	54	32	61	30
CAATTGGCGGGAATGA	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
TTTTAGCATTTGACGC	alt_1893_negative	87	152	107	111	136	110	191	82	150	80
GTTGAACTTAGATGTC	alt_1893_negative	19	14	16	14	15	12	18	7	14	12
TCCGTTCCCCCCCAGT	alt_1893_negative	10	33	7	14	22	9	33	12	35	4
CAGTCCACAGTCTTGA	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
ATCTTTTGTCTGACCT	alt_1893_negative	1	4	5	4	5	3	4	3	6	0
CCCTGGTGATTCACGC	alt_1893_negative	27	61	35	39	57	36	75	23	56	34
TCGGCAATCCGGGTCT	alt_1893_negative	1	1	0	2	6	2	0	0	0	0
GTCAGTAATCGTTTCT	alt_1893_negative	4	16	18	19	19	12	16	14	27	14
CCGTTTACATTTACTA	alt_1893_negative	17	34	13	14	43	16	53	21	35	14
TCACGTTTCCCGTCCG	alt_1893_negative	58	125	81	54	143	80	101	64	122	60
CTGGAACGTATGTTGG	alt_1893_negative	6	8	6	6	12	4	11	3	4	7
CTTCATTGCCAATTCT	alt_1893_negative	19	31	21	15	37	17	39	22	56	28
TTTGACCATTTTTTGA	alt_1893_negative	22	46	30	27	49	22	30	27	43	19
ACTACCGAAATTATAG	alt_1893_negative	6	12	3	4	8	4	13	6	11	7
GCATGTTTGCTGCTAT	alt_1893_negative	51	127	70	70	93	66	132	69	117	56
TAAGTTACGAGACCTG	alt_1893_negative	165	291	192	160	243	153	289	139	308	141
GTCCGCATCCGCTGGT	alt_1893_negative	2	7	5	3	7	5	8	1	6	4
TTTTGTTAAGACACCC	alt_1893_negative	32	77	51	31	58	64	62	29	73	37
TTCTTTAGTGTCGGAT	alt_1893_negative	16	17	22	3	32	16	18	8	29	17
CCCGACGTTGTCGAAC	alt_1893_negative	8	53	25	12	38	13	50	16	44	13
CATTGGTTGCACGCAA	alt_1893_negative	13	27	17	12	36	12	38	21	33	16
AGCCTTTTCTTGCGAC	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
CGTTACTGAACGAATA	alt_1893_negative	54	105	62	57	112	52	93	62	119	59
TCGGATGATTCTCAGT	alt_1893_negative	4	5	1	1	2	2	4	2	6	1
GTCTTAAGCCCAGGAG	alt_1893_negative	45	98	52	43	90	51	87	44	107	48
TTGAAATACCATAAGA	alt_1893_negative	120	208	153	153	183	130	227	113	231	124
CCCGGTATGACCAAAT	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
TGCTGCCCTCTTGTCT	alt_1893_negative	5	3	5	2	5	2	3	1	5	3
CGAGATGGAGCACGCC	alt_1893_negative	32	58	53	37	63	35	64	24	67	34
ACCATCGCGTAACTAT	alt_1893_negative	44	68	44	28	67	39	74	24	84	31
TACTTTTCTGACTCAT	alt_1893_negative	103	172	102	105	133	90	180	103	145	88
ACGCCTACCCGAATGG	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
GCACGATTCTTCTATC	alt_1893_negative	5	3	4	3	7	5	6	2	10	4
CCGATTCTTCGAATAA	alt_1893_negative	22	31	22	16	35	19	26	21	41	24
TTCGGTTAAATTCTTA	alt_1893_negative	49	78	72	52	114	60	122	47	111	44
GAGTGGAGTAATAACT	alt_1893_negative	28	51	35	35	46	36	58	21	47	25
ACGCGCGTGTAAGAGA	alt_1893_negative	40	57	43	43	60	43	71	41	75	42
GCCAGGAATAGTTACC	alt_1893_negative	23	27	20	18	27	26	24	15	44	15
ACCATTGGCGGAAACG	alt_1893_negative	24	37	16	13	22	18	28	23	34	15
GTAGAGGTGCGCCGAT	alt_1893_negative	0	0	0	0	0	0	0	0	0	0
TTATTAGGGGTTATTT	alt_1893_negative	3	9	3	6	6	4	8	2	9	3
ATGAATCTTAGCAATT	alt_1893_negative	30	48	44	20	65	42	53	39	60	41
TGCGACACGTCCGGGC	alt_1893_negative	7	13	9	7	22	11	26	5	17	4
TAAGTCGCTCTCGGGC	alt_1893_negative	13	23	21	12	23	7	19	7	25	16
TCGGTCATCTAGTGTG	alt_1893_negative	27	65	20	20	67	16	64	26	63	20
TTGTTATTTAAAAACG	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTTATCCGACTTGACC	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TACTATATCTAGCGGA	alt_3478_reverse	18	12	36	21	9	7	12	15	7	17
ATATTATTAATAGGTC	alt_3478_reverse	28	24	35	26	23	22	19	26	23	16
CAGAGTTCACGTACCT	alt_3478_reverse	9	25	9	10	16	12	23	6	37	8
ACTTCTTTCTTAGCCT	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTTAATTTGGGAT	alt_3478_reverse	52	53	67	45	44	51	42	35	47	45
GCATATCCTCGATCTG	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TTTAATTGACTTTAAG	alt_3478_reverse	54	62	77	59	50	61	53	70	43	54
CTCGTCCAGCCGCTTT	alt_3478_reverse	112	101	152	100	90	126	86	121	109	107
ACGTCTTGGAGGGATC	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTGGAACACGATGTGC	alt_3478_reverse	14	9	14	23	8	14	12	13	16	7
TAGTTCTCCCGAAGGC	alt_3478_reverse	19	14	22	17	18	15	13	23	26	19
GTGAGCCGTGGGCATC	alt_3478_reverse	29	22	64	46	22	36	35	31	26	38
TCACCGATTTGATACA	alt_3478_reverse	99	64	88	75	62	58	70	69	84	77
GCCTGCTGCTCGTCGA	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGTCCACACACTT	alt_3478_reverse	71	60	123	74	58	58	36	76	65	66
CTAAAGAGTTTTTGCC	alt_3478_reverse	19	17	22	11	21	17	16	20	20	17
AGTGGGTAGCTCTATA	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGATTACTTCAGG	alt_3478_reverse	33	31	38	32	23	31	51	33	30	35
CGCGGAAATACTGTTT	alt_3478_reverse	138	97	159	152	97	134	133	132	117	117
GTGAAATTTGCTGTCC	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGGTGGTCCAAGC	alt_3478_reverse	95	51	82	88	56	95	63	49	45	66
AATATCATCATAGCTG	alt_3478_reverse	51	28	74	47	42	65	38	38	34	49
GCCGCCTAAACCTTGC	alt_3478_reverse	20	24	14	13	16	9	17	13	22	14
CGTACCAGCGTACTTA	alt_3478_reverse	10	5	1	2	13	4	2	3	9	2
CTGAGCTGCCAGAGTG	alt_3478_reverse	52	55	81	56	75	53	51	65	53	50
AGGGGCTTGCTTGCTA	alt_3478_reverse	7	8	12	16	11	16	6	8	12	4
AGGTTGCCGGACAACA	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTGTACTGGGTTG	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
AACAGTGTTCCTGATT	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
GACATTTAAATTCCGT	alt_3478_reverse	92	62	121	106	84	94	80	99	66	73
AAGTCTCCCTCCTTCT	alt_3478_reverse	8	2	6	2	2	1	4	3	2	3
AATTCATTTGCCAGTC	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGACTCACACGAC	alt_3478_reverse	11	17	9	10	11	11	12	7	10	8
GTGTAGCGTCTGTACA	alt_3478_reverse	45	45	78	64	43	53	67	77	50	53
GTGATATTAACAAGTC	alt_3478_reverse	317	199	373	294	180	345	244	283	241	236
CGTTCCTCAGAGGCTT	alt_3478_reverse	14	9	20	19	17	32	5	21	13	17
GTTGGTCTTTTACCAT	ref_3478_reverse	42	40	44	43	43	31	53	48	64	38
AAGTCAATCTGGCAAC	alt_3478_reverse	32	39	45	40	39	37	22	34	19	29
TCGCGTTATTGCCTGC	alt_3478_reverse	24	20	24	22	22	25	18	24	23	18
CTCCGTTACAGTTGTA	alt_3478_reverse	120	68	126	91	79	116	74	97	77	93
CTCATGTTTATTGTAG	alt_3478_reverse	76	53	96	80	70	78	49	80	42	73
TGCAACAACCACTAAC	alt_3478_reverse	39	28	58	43	51	31	48	33	36	38
ATCCGGTCGGATCCAA	alt_3478_reverse	15	11	11	10	6	5	7	10	6	7
GGCTCGCGGTATATTT	alt_3478_reverse	16	16	24	25	19	13	21	12	15	14
GACTCGCCCCAATTAG	alt_3478_reverse	47	38	61	45	47	47	51	50	43	47
TATGAATCTGGATGCT	alt_3478_reverse	57	49	76	63	58	64	54	76	61	56
ATCTGCTTTTAAGGTA	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTCGAAGAAAGATCCG	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTAATCACTGGCG	alt_3478_reverse	11	17	20	17	9	9	14	22	9	28
AGGCGCTAGTTGTTTG	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
ACATTAAGGTCGTTTA	alt_3478_reverse	296	211	347	307	243	293	248	263	229	244
GCACTACAGTGAGTTT	alt_3478_reverse	4	6	9	10	3	3	6	5	4	7
GTTTTCAAGTTAGGTG	alt_3478_reverse	55	50	63	64	44	44	48	46	45	49
GCGCCACAATGCGTTA	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TAATGGTTATGCCTCG	alt_3478_reverse	32	22	41	32	27	30	34	48	25	27
TTGGGCGATCGCCTTT	alt_3478_reverse	20	5	20	22	14	10	12	17	9	14
CATCCGGGCACTAGCT	alt_3478_reverse	82	58	92	87	42	69	76	98	63	69
GCACGTATGCTCGGAC	alt_3478_reverse	34	34	65	50	43	54	48	42	43	41
GGCGCTCCCCTTTATG	alt_3478_reverse	103	121	135	116	120	106	117	76	113	75
CGTTGGGATTTGGACC	alt_3478_reverse	152	123	178	149	168	153	137	151	133	141
ATATTTTAACTTTGAC	alt_3478_reverse	46	53	70	50	35	58	41	59	38	41
CCTCAACTCAGCAATA	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
GATGGTTATCATGCCT	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTCTCAACGTGGT	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTCTTCCGCAAGG	alt_3478_reverse	33	9	39	28	25	25	29	34	19	30
GTCACTGTATACGAGG	alt_3478_reverse	26	9	22	12	15	11	9	14	11	10
TCGCCAGGTCGTCTAC	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTGGATCATTGTA	alt_3478_reverse	111	98	171	104	93	104	90	96	80	124
ACCAGCCGCTTGTTCT	alt_3478_reverse	3	10	9	3	1	4	9	5	2	11
TAGTCGCAAGCAATCA	alt_3478_reverse	85	61	92	70	85	79	57	79	58	73
GACGAATTTTTCCCAT	alt_3478_reverse	67	41	88	71	37	71	51	67	43	58
ATATGTTTATGGTTAG	alt_3478_reverse	35	22	30	26	21	14	26	37	24	26
ACGGTTGTTCGTCTAC	alt_3478_reverse	21	20	26	26	29	16	20	24	33	23
AGTCTATGTCGTTCGC	alt_3478_reverse	23	10	23	23	17	22	19	27	12	12
ATTGGCGCCGAAGGCT	alt_3478_reverse	23	13	23	19	12	12	26	10	16	20
TCTTAGTTTTACGAGG	alt_3478_reverse	24	29	32	24	20	26	22	21	16	14
TCCGCGTGTTTATCCC	alt_3478_reverse	23	19	28	25	9	14	16	23	12	7
GGATGATCTGTTCCCT	alt_3478_reverse	22	20	18	17	8	15	18	19	15	17
TTGCTGCGAAAGTAAA	alt_3478_reverse	25	20	28	26	18	34	29	29	27	33
TGAACGTGTCATGTAC	alt_3478_reverse	4	2	5	2	3	9	4	6	6	6
TTCACCAACATATAAG	alt_3478_reverse	273	192	349	287	233	262	257	295	230	239
TACATTTCCCTAGCAG	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTACGTACGTATT	alt_3478_reverse	2	2	12	8	0	10	9	4	10	8
CATCCCCCACTTCATG	alt_3478_reverse	10	11	9	11	4	11	4	9	2	10
CCGTTGAAGCGTTGTG	alt_3478_reverse	33	11	32	31	22	24	8	16	8	21
GGTATATACATGTTTA	alt_3478_reverse	69	56	85	63	51	57	41	50	78	51
ACTCTGTACTTTTTCC	alt_3478_reverse	20	17	31	31	3	17	12	19	25	21
GGGCAAGCGTCCTTTC	alt_3478_reverse	23	22	21	22	18	24	16	10	19	19
GCCTTTGCCCTTTTTT	alt_3478_reverse	0	0	0	0	0	0	0	0	0	0
TTTACTCCCAACAGTC	alt_854_upstream	4	6	0	2	7	7	12	2	18	3
CCCGACCCGGCAAGGT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGTTGTGATGGGT	alt_854_upstream	14	27	18	16	31	13	23	9	22	4
CTTAAAACAAGTGAGG	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGTCATTGTTCGA	alt_854_upstream	4	7	4	1	9	3	5	2	7	1
ACGAAGGCAATGTTAG	alt_854_upstream	13	19	6	8	21	10	16	13	14	5
GATACGGGGTGGTCAG	alt_854_upstream	6	5	6	4	2	3	5	4	5	5
CCTCTCGAGCTAATAC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTCACAATGCTC	alt_854_upstream	7	8	11	4	9	6	13	6	15	9
TGCCCAGCTCCAGCGT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCGAGTAACTCAC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TCGGACCTGGGTTGAA	alt_854_upstream	2	13	6	8	8	10	10	6	16	4
TTCCGATGTTCAATAT	alt_854_upstream	14	25	28	23	38	19	21	13	21	14
GCGCAGGCAGATTGCC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGACACTTTGATA	alt_854_upstream	0	3	0	4	3	7	0	0	2	0
GTAGTAAGTGGCGCAA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GCACGCACCGGACCTG	alt_854_upstream	24	29	32	25	38	29	43	29	27	23
GCAAATGGTTTAAAAA	alt_854_upstream	9	15	29	16	38	19	26	22	28	19
ACCTCCGCCCGGGCCA	alt_854_upstream	30	47	38	28	47	23	48	32	49	32
TCTTCCAACAGCTCTA	alt_854_upstream	15	28	12	14	31	10	19	12	16	14
TATAAATAGGCTTTGT	alt_854_upstream	10	26	15	11	23	13	36	12	27	8
GTGCCGCCAGGTAGTA	alt_854_upstream	1	0	1	0	3	0	0	2	0	0
GATAAATCTTTTGTTT	alt_854_upstream	36	42	46	44	35	29	29	31	34	35
TTAGTATCGACTCTAT	alt_854_upstream	1	3	5	2	2	4	5	5	8	1
GGACTGCGCGTCCGTA	alt_854_upstream	32	47	42	31	50	31	68	25	72	28
CGGAACACGGCTGTTA	alt_854_upstream	209	287	228	199	323	182	320	189	341	185
TGCTCTAATCGCCGTA	alt_854_upstream	71	99	65	53	111	60	102	56	104	54
ATACCATACCTTCTTG	alt_854_upstream	10	19	4	10	28	9	29	7	14	3
CTTGAGTAATCCTTTG	alt_854_upstream	11	5	9	5	16	5	14	10	17	8
TTGGTGTAAAAGGTCT	alt_854_upstream	8	11	10	12	17	10	12	6	22	7
TGGCCTAGCTCTGTAG	alt_854_upstream	0	6	5	0	2	1	1	1	7	0
CATTTAGGTTTATTGT	alt_854_upstream	2	11	4	5	10	6	14	5	11	6
ATCGAGCTCTTTTTCA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TGAAGTTATGCACTAA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTTGTACTTCGTC	alt_854_upstream	15	17	22	13	21	12	17	14	16	9
TTACAAAGCTAACGTT	alt_854_upstream	28	71	45	36	51	20	61	36	50	39
GCAGTTGATGCAACGA	alt_854_upstream	13	30	12	14	36	14	27	15	18	15
TCTAACCCCTCTGGGG	alt_854_upstream	23	31	27	20	43	17	45	23	41	28
ATGCTCGGGACTGTGT	alt_854_upstream	1	2	0	2	2	3	4	1	4	1
GATTCGAGCTTTGTCA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CATCTGTCAAGATAAT	alt_854_upstream	16	49	26	18	41	20	45	39	57	22
CCGCTAAGACCCTTGT	alt_854_upstream	24	30	20	26	64	25	57	34	44	26
TGGGTAGGAAATTGAG	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CGATTTTCCACCATAA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
AACCTCCATATCGTGC	alt_854_upstream	68	257	70	61	284	58	275	44	272	49
CTCATTCTTGGTACGA	alt_854_upstream	2	3	1	2	5	0	2	2	5	4
ATCCACCTAGAGACGT	alt_854_upstream	17	29	16	20	12	11	30	9	32	21
GACTCAACTACAGTAG	alt_854_upstream	9	5	8	11	11	8	12	1	11	0
CACGGATGGAATGGTC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TTTGAACACTATTTGG	alt_854_upstream	12	17	15	13	21	9	7	9	21	8
GACCCTTTCTTAGGTC	alt_854_upstream	5	19	9	10	19	8	19	8	14	7
AGGTACTTGTTAGCCA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTGTTAGTCAGAT	alt_854_upstream	3	4	0	3	5	2	4	0	7	3
GGTTTTTATCGCGGTC	alt_854_upstream	0	3	7	3	2	0	4	3	2	1
TAACTGGTAGTGGTTA	alt_854_upstream	16	22	22	15	19	17	24	16	30	16
TGCGGTTTCATGGATA	alt_854_upstream	29	54	44	28	46	32	39	26	46	35
TCTATCGTGTTACTAT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGATTTTTGTCTC	alt_854_upstream	2	5	3	3	4	1	4	2	6	4
CCTTGCAATCTAAAGA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGGCGTTTTGGC	alt_854_upstream	6	21	11	10	18	8	20	10	15	7
GTACAATGTGGGTTGT	alt_854_upstream	10	32	12	17	36	16	15	17	16	22
CAGGGCCGGTACAACG	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTCATTCATACGA	alt_854_upstream	3	3	4	1	7	7	13	1	7	9
TTAATGCTCTGAAACC	alt_854_upstream	82	102	87	64	123	83	130	56	151	64
CAGATGAAAGTATCCT	alt_854_upstream	3	1	2	1	5	4	4	4	6	5
AATCTATTATCTTTCA	alt_854_upstream	21	20	31	32	35	20	32	18	33	21
TGTACAGCCAGAGCTC	alt_854_upstream	5	25	12	11	18	6	17	8	14	6
TGTGTGTTTTAATAGG	alt_854_upstream	72	167	81	67	132	81	134	77	148	79
TTACATGCCACACTCG	alt_854_upstream	5	10	4	6	12	6	8	5	9	4
CTGGTAGCTGCGGTGC	alt_854_upstream	1	3	1	1	2	3	2	0	2	0
AATTCGCATTACTTTT	alt_854_upstream	35	67	47	38	57	25	64	37	48	28
GCTTCATAGCTACATA	alt_854_upstream	3	4	2	3	2	3	4	1	0	2
TTCTCTATGTTAGGGC	alt_854_upstream	7	17	13	8	27	10	12	8	17	5
TTCCCCGTTGTACTGG	alt_854_upstream	0	35	6	4	29	4	47	6	39	4
CTCATTAAGTACCTCT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGATCTTCGGCTT	alt_854_upstream	44	56	28	37	47	26	35	25	56	31
GTCTTTGCTTGGTAAT	alt_854_upstream	28	30	24	31	40	27	41	9	49	26
GCTACAAATCTCCAAT	alt_854_upstream	13	18	15	17	27	26	28	14	26	10
TTTATCTTTTTTTGAT	alt_854_upstream	129	170	137	111	179	130	169	116	162	102
AGCACTGCGTGTCTAA	alt_854_upstream	1	3	5	2	4	0	1	0	1	1
AGTGCGTCCGAACGTC	alt_854_upstream	18	42	26	20	23	23	43	18	40	14
CAAATTTGGTCTGGTT	alt_854_upstream	6	10	5	8	5	5	13	2	10	6
ATTAACTTTTGTTTTT	alt_854_upstream	17	12	20	18	24	14	19	8	16	20
TCCGCAATCGGTCTAG	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CCGACCTGTCCATTTC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GCATATCCCGCACCTG	alt_854_upstream	37	49	19	34	71	27	47	18	48	34
TCATGGGTTCTATTAT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGCGTACCATCA	alt_854_upstream	10	12	8	3	14	8	19	5	4	6
GGCGCTCTGCAGTGCG	alt_854_upstream	27	11	24	21	26	25	18	34	16	33
AGCACGTCACGATCAC	alt_854_upstream	121	181	140	127	163	129	153	148	178	127
CGTTCGGTGCCTATCG	alt_854_upstream	3	11	6	7	8	8	8	3	9	5
ACCACATGGTGTACCC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTAGATTGCAAGT	alt_854_upstream	13	43	26	34	36	20	36	10	40	18
GTGCATACGCATGGAG	alt_854_upstream	5	19	5	6	14	5	11	8	14	8
TAACTTTAGCACTATT	alt_854_upstream	0	4	3	0	8	4	4	5	1	3
TTGTTTTGTCTTTTAA	alt_854_upstream	3	1	7	3	3	1	4	6	3	2
CCCTCCTGGAGTAAAA	alt_854_upstream	5	13	11	4	11	8	16	5	9	7
CGGGTTGGTCCCTAAC	alt_854_upstream	6	11	9	12	27	10	23	12	19	5
GGCTAGTGTTTTGTGG	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTGCATACACCC	alt_854_upstream	1	0	0	0	0	1	0	0	0	0
CGATAGATGGTGGCAC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TCACGTAGTAGGAATG	alt_854_upstream	68	179	77	64	183	64	150	58	199	62
TTTTATGCGCCGCTAT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTAGCACTGTCCA	alt_854_upstream	58	111	60	53	101	63	109	50	121	62
AACCGACTGTCCTTGG	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCCAGGGGTCTTA	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTCGAGCTCTGCC	alt_854_upstream	9	18	13	16	20	9	22	17	22	6
TTGTACATTCCCCGTA	alt_854_upstream	7	99	4	7	89	3	107	2	119	5
CCGGTTTTCTACATGA	alt_854_upstream	3	15	11	10	19	5	9	3	24	4
TATCTGTTCAGTGGCG	alt_854_upstream	9	10	10	4	23	6	10	10	25	11
TTGGCGCCACGTGCAA	alt_854_upstream	73	97	94	73	79	72	111	59	110	58
GGCTGTAGCTCCAATA	alt_854_upstream	14	19	21	19	18	15	27	21	20	14
TTAGCTTCGTAAAGTA	alt_854_upstream	32	48	43	24	52	41	42	24	52	28
TTTGCGGGTTTGAGCT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAATCTCGCCTTC	alt_854_upstream	1	1	3	1	11	1	8	1	5	0
AAACAGGGCTTCAGCC	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAACCTCTCTCC	alt_854_upstream	19	26	29	15	22	21	29	17	39	15
ATACTTTTACGTGCCT	alt_854_upstream	8	9	2	5	0	7	1	5	5	1
ATCGTTTTCTAGCGCG	alt_854_upstream	20	20	20	14	31	10	25	19	31	11
CTAATCACTCTCTCGC	alt_854_upstream	13	32	30	20	32	19	27	13	30	8
TTCCACCTGCAATAGT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
GGATCTATGAGTCCCT	alt_854_upstream	0	0	0	0	0	0	0	0	0	0
CTTTATATAATTTTTT	alt_854_upstream	12	22	35	22	28	17	34	11	29	14
GGTTAACTACAGTTTA	alt_854_upstream	26	28	19	25	44	21	30	21	37	18
CTGGTACACACCAATG	alt_854_upstream	20	59	32	24	46	14	53	18	60	19
TTCAAGACATATATTG	alt_854_upstream	25	41	25	25	36	17	46	17	41	26
GCCTTGTCAGTACGTC	alt_854_upstream	16	39	17	17	19	17	31	9	34	17
TCGGCAGTTTACCCGA	alt_854_upstream	10	13	17	14	28	19	23	10	22	11
TACTGGCCTTTTGGTA	alt_854_upstream	13	24	19	23	38	17	41	21	44	14
TACACTGTCTGCGATA	ref_5844_new	0	0	0	0	0	0	0	0	0	0
TGTCTGTGCTCACCCA	ref_5844_new	52	89	57	50	95	68	109	51	116	48
ACTTAAACAGACTATC	ref_5844_new	26	51	31	17	57	24	46	19	45	25
CTGCTATTTTTTTGGC	ref_5844_new	2	12	7	5	8	5	8	2	12	6
CCTAAGGTTTCCTGCG	ref_5844_new	7	33	13	10	22	13	24	11	32	7
CAATACATGACTTTTC	ref_5844_new	0	0	0	0	0	0	0	0	0	0
TACTTCTATCTATTAT	ref_5844_new	0	0	0	0	0	0	0	0	0	0
GATGTGACTTCCGTTT	alt_5844_new	20	29	22	29	28	22	28	19	34	22
TGTTAGTCCCGCCTAA	ref_5844_new	64	91	72	41	89	61	99	57	102	60
GTGGATATACGCTACA	ref_5844_new	8	22	14	11	28	15	33	16	20	23
TTTCTACCGCTACTTG	ref_5844_new	6	16	20	19	21	12	29	8	26	6
AGTTGCTATTTACGTT	ref_5844_new	1	4	0	4	4	1	1	2	6	2
TCGCTTAAGCTTGGTT	ref_5844_new	21	44	34	27	39	23	54	18	43	30
TTGGCGTATACATATT	ref_5844_new	0	0	0	0	0	0	0	0	0	0
GCTGTCCCTATCCGTG	alt_5844_new	10	20	13	5	18	4	19	6	18	9
TGTTGTGTTTTGTTTC	ref_5844_new	0	0	0	0	0	0	0	0	0	0
TTAAATTTGATTTCAT	ref_5844_new	0	0	0	0	0	0	0	0	0	0
TGGCATAGCGACACAC	ref_5844_new	135	208	131	109	194	120	135	118	220	126
CTCCCACTTCTACAGC	ref_5844_new	0	0	0	0	0	0	0	0	0	0
TGCGGTTAAAGGCTAT	ref_5844_new	12	10	11	7	12	5	18	7	8	7
TTTCTCACCGGCGTGG	ref_5844_new	0	0	0	0	0	0	0	0	0	0
TACAGTTAAAAAGCGA	ref_5844_new	31	13	51	37	11	44	10	32	23	40
CGCTCCTGAGTTGGCC	ref_5844_new	8	20	20	17	15	21	13	11	9	11
CATCACCCATACTCGT	ref_5844_new	80	103	82	64	124	48	99	71	125	73
TTGGCGCCGGGTATGC	ref_5844_new	14	28	18	12	24	6	17	15	20	7
ATTCTCTCTCTCTTCG	ref_5844_new	1	1	1	3	1	0	5	4	4	1
TCATTGCAGACTGTTA	ref_5844_new	122	226	151	147	236	120	235	115	259	131
ATTATTAATAGCAGGT	ref_5844_new	9	15	10	4	23	5	12	8	6	7
GCAGAACCCTAGCTCG	ref_5844_new	11	16	13	9	11	3	11	8	8	9
TTTACGATCTGTATTC	ref_5844_new	14	20	12	12	25	13	29	13	27	14
TTCGTGGCCTTCGTGG	ref_5844_new	0	0	0	0	0	0	0	0	0	0
GAGTCGTGCTTTGTTT	ref_5844_new	47	84	64	51	75	61	75	39	90	45
TAGCTATCCTGCTGCG	ref_5844_new	12	36	15	16	29	14	27	18	35	7
GCCTTGCGAGTTTCGG	ref_5844_new	19	13	10	21	31	12	23	10	26	7
GGCTCACCTCAGGTAT	ref_5844_new	3	13	11	5	6	1	7	6	11	6
TATCCTGGATCTTTGA	ref_5844_new	25	37	36	22	41	34	38	15	34	24
CAACGGCTGACAGTAC	ref_5844_new	32	35	26	19	46	29	47	22	38	28
GGATACTCCTGAAGTC	ref_5844_new	0	0	0	0	0	0	0	0	0	0
CATGGATCACGCCTGG	ref_5844_new	28	36	31	23	45	17	49	13	47	19
CTTCGTTCCTTTCAAC	ref_5844_new	2	7	8	2	8	4	11	7	10	10
ACCGTGCTCCTTCGGG	ref_5844_new	28	47	29	21	37	20	39	19	41	24
TCGATGTCTGACTTCC	ref_5844_new	9	15	9	13	23	9	15	8	15	8
GGCTCTAAGTTTATTA	ref_5844_new	115	140	114	84	157	106	155	88	164	86
ACCCTTCGGGGGTTTC	ref_5844_new	0	0	0	0	0	0	0	0	0	0
GGGTTTACGATCATTG	ref_5844_new	19	32	22	18	32	24	34	10	41	13
TTTCCAGACGTCACTG	ref_5844_new	28	49	33	28	37	24	37	32	31	30
AGACGTGATCTTCGGT	ref_5844_new	5	3	5	2	6	7	9	4	8	2
TGCTGTCTCTGGTCGC	ref_5844_new	20	29	22	19	31	17	41	24	19	16
GGCTTCGTCGAGTTTC	ref_5844_new	13	26	21	21	28	20	36	11	22	16
GTTCTTACCAGTCTAT	ref_5844_new	35	68	25	23	80	38	65	33	65	34
TTAAGAATTAATGTAA	ref_5844_new	48	86	67	41	106	66	82	48	83	59
GGAGTCTTGGCGTGTG	ref_5844_new	37	45	47	26	52	31	47	28	39	24
TATAGTGAGATTTGAA	ref_5844_new	15	33	32	22	28	26	33	19	35	20
CCACACTCAGGGCAGG	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
TCGCTCACGTGAGTCT	ref_3640_RC	1	8	3	8	9	3	7	4	4	2
GCGCTGTGTTGCTGCA	ref_3640_RC	49	78	36	37	65	24	83	30	83	26
CCGCTCTAACGTGTAG	ref_3640_RC	3	16	3	6	37	5	27	1	26	6
AACTATGGAAGTTTTT	ref_3640_RC	82	175	109	90	181	92	200	85	218	70
GATCTGTGTTTCAATG	ref_3640_RC	1	6	7	5	7	6	11	5	10	4
TGCAACTATCCAAAGG	ref_3640_RC	6	9	16	5	12	5	10	5	20	4
TCCGGATTGCTTATAT	ref_3640_RC	14	25	11	21	31	16	46	11	32	4
ATTATCGTCTACCTAT	ref_3640_RC	13	45	22	17	44	20	39	26	39	15
TTGGCCTTACTGTGTG	ref_3640_RC	16	25	7	8	27	4	25	6	16	8
ACGTCGTGTCAAGGAG	ref_3640_RC	5	14	11	4	11	7	15	4	16	3
CATTTTATCTACTGCA	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
TACCGCATCGGCCGCT	ref_3640_RC	27	35	20	20	41	18	32	16	36	11
TTGTCAAGAATCGCCT	ref_3640_RC	34	99	43	42	107	42	94	41	109	41
TATAATCGGTTTTGGT	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
CGGTACCCTTGGTCAG	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
CGTTTCGCAGTTCCGT	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
TCTCGAACCGGCCTTA	ref_3640_RC	10	48	11	19	54	15	40	16	68	12
CGGCTCTGTTTACTTA	ref_3640_RC	7	21	11	11	23	14	15	5	17	11
ATTTCATTGGAGCTTT	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
ATCCCCCCGCGCAAGA	ref_3640_RC	3	8	2	2	5	4	5	3	4	1
CCCTCCGCCTTTAACA	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
CCGCGAGTCATACATC	ref_3640_RC	6	34	8	5	12	5	13	5	14	6
GGTGCATGGCTGTTAG	ref_3640_RC	12	15	2	6	5	9	12	6	12	11
CGGCTGCGAGAAGATA	ref_3640_RC	8	9	7	5	14	7	19	7	15	3
GTTGCCGCCCTCTCGG	ref_3640_RC	15	50	23	25	32	25	42	22	48	20
GGATTCATAGTGTTAC	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
GGGCATACTCGATAGC	ref_3640_RC	4	22	11	8	26	4	17	3	28	6
TGATACTCTCACACGT	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
ATTCGGGCATAAGACA	ref_3640_RC	5	10	8	4	10	2	11	2	16	5
GACTGTGTTGCTCCAA	alt_3640_RC	1	2	1	0	2	0	4	0	3	0
CATCCGGTGGCGCGCG	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
ACCCCGCGTGGGGGAG	ref_3640_RC	4	10	8	3	11	3	13	5	8	3
GTGCAACAGGCTATGC	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
TATTGATTTGTTCAAG	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
CCCATATTATTCGTCT	ref_3640_RC	17	30	17	12	33	12	31	14	28	22
GTTCGCGAAGGACCAC	ref_3640_RC	34	65	39	36	85	34	78	22	78	28
GAGCGTTTGTCCTTAT	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
ATCCAGAAGGTTTGTG	ref_3640_RC	21	57	26	23	52	26	41	18	55	20
CATAGTTCAACCAGTT	ref_3640_RC	32	57	27	25	92	22	76	31	74	30
TTATAACCACCGGGGT	ref_3640_RC	0	0	0	0	0	0	0	0	0	0
ACAGATCCTCTACATG	ref_3640_RC	0	3	2	3	5	2	1	0	3	0
GCACTCCTCAGCATAG	ref_298_upstream	12	26	10	6	27	7	27	9	27	10
TTTCGCCTGAAGGGAT	ref_298_upstream	40	26	32	21	15	33	17	25	16	26
TTACTAATTGCCACCT	alt_298_upstream	15	10	31	20	4	19	14	24	11	13
CTGCGTGCCTTTATAC	ref_298_upstream	114	111	187	153	104	141	94	142	117	128
GCCTTAAAGGAATACT	ref_298_upstream	42	40	63	60	32	59	46	59	28	60
AAAACAGGTCTCAGCG	ref_298_upstream	121	70	152	133	66	114	63	113	77	98
ACGGCCTTTATCGATT	ref_298_upstream	21	10	16	15	14	23	19	12	11	20
ACCTCCGAACTCTGGG	ref_298_upstream	38	45	43	39	58	46	50	49	44	45
TTTCGTCCGAATTAAC	ref_298_upstream	11	5	7	11	9	20	5	15	4	12
CGTCGCAGACCCTGAG	ref_298_upstream	40	30	44	49	32	43	34	47	36	40
GCTACATAGGTACGTT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
AGGAGTAACCTTCTTT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
CCATCTTATTCTACCC	ref_298_upstream	8	12	12	11	5	8	9	14	9	8
GTTACAAGATTACTTG	ref_298_upstream	109	66	169	145	90	130	96	120	76	109
TCACACGCATGCTCTA	ref_298_upstream	91	36	67	63	48	74	48	80	45	70
AACTGCAACGTGACTT	ref_298_upstream	194	109	193	207	131	234	113	186	106	169
GCGTCTACTCCGGCCC	ref_298_upstream	61	38	62	57	40	48	31	49	30	44
GTGCACAGTGCGGCCT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTGCATGTTGTTG	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCGTGGGTTTGGT	ref_298_upstream	116	76	128	120	61	85	72	79	81	88
TGCTGGGTAAGGCACC	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
AGTCGAGGTATCGTGT	ref_298_upstream	31	9	20	25	18	20	9	39	15	33
CCACCATAATTATTCA	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGAAATTACGAGC	ref_298_upstream	15	8	15	19	10	11	9	18	4	10
CGATCCATTTGCAGTT	ref_298_upstream	42	34	69	48	50	49	37	50	59	38
AATTCTTTGTACGCTC	ref_298_upstream	424	228	461	420	234	373	218	394	251	355
TCGATCCATTCAACAT	ref_298_upstream	51	28	65	44	35	45	40	43	33	45
TGTTTCGATATAGGAC	ref_298_upstream	93	59	130	94	43	73	63	91	54	70
GGTCGGCATTTGTCTT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTATAGTCTCGTC	ref_298_upstream	2	3	4	3	9	2	8	6	5	1
CCGCGACACGTCCCTA	ref_298_upstream	42	26	47	53	43	34	35	36	47	33
ATAGTACTACATCTGA	ref_298_upstream	123	93	161	166	78	122	94	94	90	116
CTCGGGTACATCTGCG	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCCTCTTCCGCAA	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCAATCTAATGAT	ref_298_upstream	82	56	112	87	42	52	54	72	52	73
CGGTGACTCGATCCAC	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGTTTGATCATGT	ref_298_upstream	42	28	68	46	27	45	33	51	37	44
CTTGTGCCACTACTGT	alt_298_upstream	79	30	73	70	41	54	39	68	40	49
CTTTGGATGGGCTGGC	ref_298_upstream	16	9	16	12	17	16	16	12	9	6
TGCAACGTTTGGCTTG	alt_298_upstream	16	14	16	17	9	8	11	15	7	13
CGAATTAAGGTCCCTG	ref_298_upstream	36	26	51	54	24	42	17	34	27	25
ATCACTTGAGGAGATC	ref_298_upstream	45	26	50	52	30	54	31	36	31	39
TTTAATTCCGGCATCG	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
GACGCCCCTTCTGAGC	ref_298_upstream	8	16	1	12	12	5	12	2	18	4
GTAAAGCCTTCCTTTC	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCAGAATTCACAA	ref_298_upstream	42	23	47	53	17	46	23	55	26	30
TGTGGCAGGGTTTATC	ref_298_upstream	27	16	31	30	22	27	13	25	20	30
TGGCTAGGCTTCCACT	ref_298_upstream	91	46	107	123	44	86	51	96	59	77
AAGCGATGTATATGGT	ref_298_upstream	55	35	72	53	33	57	41	68	28	34
CGATTTATGTTTAATT	ref_298_upstream	434	346	529	467	341	411	373	422	352	338
TGCCAAAAGTTATCCC	ref_298_upstream	15	8	18	12	12	20	14	14	7	15
TTCGGTCCGATGACCT	ref_298_upstream	73	50	66	87	38	61	39	72	50	71
ATCTTTAGCTAGTACG	ref_298_upstream	209	164	259	227	159	172	139	207	164	184
GTGTTTTGACAACCTG	ref_298_upstream	184	137	246	205	149	165	138	195	128	209
ACATGTGTTATTGATC	ref_298_upstream	139	84	157	142	63	122	78	121	98	107
ATAGTATGTTAGATTA	ref_298_upstream	96	59	109	70	41	85	38	73	44	73
GCACTATCGTATATGT	ref_298_upstream	145	109	147	135	97	117	93	106	103	105
TTTTTAGATATTGATG	alt_298_upstream	254	107	290	278	114	236	114	231	123	236
GACGTCCTGTGTTCTC	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
TACAAATGTTAGGAAG	ref_298_upstream	109	62	121	127	70	98	74	112	61	102
GTTGACCAGCCGATTC	ref_298_upstream	4	7	9	10	3	10	11	5	5	11
CTAGGTGGCTTGTTGG	ref_298_upstream	37	31	56	48	35	43	27	58	30	46
TGTCCCGGTCACCAGG	ref_298_upstream	38	66	42	50	65	38	69	29	76	39
ATGATAAGGTTAACCG	ref_298_upstream	200	125	273	215	125	201	96	223	137	170
TAGACGTTTTCGACTA	ref_298_upstream	154	73	178	164	110	158	127	158	113	140
GAACCCTGATTGCTTT	ref_298_upstream	48	35	60	46	31	65	44	53	36	50
ATAGTGTGCGTACCCA	ref_298_upstream	48	21	41	45	35	47	18	52	32	52
CGTTGGGTGTCTGTGG	ref_298_upstream	30	14	25	29	10	10	20	19	9	23
AAGGCATGCCTGCCCC	ref_298_upstream	29	10	28	21	12	22	11	22	11	19
GCGTATCGAGGTCAGC	ref_298_upstream	19	10	22	17	11	17	10	19	13	31
GAGGTTAGCCTTATAA	alt_298_upstream	185	74	265	238	89	183	89	175	84	179
CTACCATCCTATGGCA	ref_298_upstream	42	35	49	63	42	45	55	35	56	34
CGCTATGGTACATGAT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCTTCATGTTTGG	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
AGGATATGAGTTCGTA	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTTACCAGTCAAT	ref_298_upstream	32	39	55	62	28	48	36	32	33	37
AGCCACTTGCGTGAGG	ref_298_upstream	61	59	95	87	79	84	81	73	73	48
GACCTTCGGTCCCGTA	ref_298_upstream	4	2	9	20	2	6	2	3	6	5
CGTCGCTACGCCTACT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAAAGGGGCCACG	ref_298_upstream	12	0	4	12	2	7	3	4	4	5
CTCTCGATTCTACCGG	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCTTTCCGGTGT	ref_298_upstream	19	13	28	16	15	15	13	30	23	14
GGCTGAATGCGTTTAT	ref_298_upstream	23	17	33	17	11	25	16	22	13	19
TGTATCTGGCGATTGG	ref_298_upstream	27	18	33	26	19	30	26	41	20	31
ACTTAATGAGTGTGTG	ref_298_upstream	69	40	62	65	32	54	54	59	43	52
GATTTAAGAGTAACTT	ref_298_upstream	152	82	182	139	81	141	103	147	107	110
GGCCTGCGGCCCTCCC	ref_298_upstream	23	17	16	16	7	23	13	23	12	11
CGGACCCTAGTGCTTG	ref_298_upstream	71	40	71	48	35	66	36	54	50	51
GATGATCGACCATGCC	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
CACGCTTTCCTTGCCA	ref_298_upstream	11	9	9	6	3	7	7	11	7	5
GATCACGGATCGAGGC	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGCGGGTTTCGAA	ref_298_upstream	110	65	167	125	60	112	84	114	57	74
CGTTTGACTTGACCCG	ref_298_upstream	26	18	45	34	31	43	25	33	28	38
TGCACGCATAAGAGTT	ref_298_upstream	17	8	24	25	15	17	11	15	18	25
ATAACACTTTTGCCTT	ref_298_upstream	23	11	36	28	14	32	17	24	26	31
TATCAAACATCTGAGT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
CGTGATCTAGCATAAG	ref_298_upstream	32	12	37	17	19	17	14	28	13	22
TATGACTGATCAGCAT	ref_298_upstream	43	33	50	50	23	41	38	36	27	56
CCGATACACTTTGCTT	ref_298_upstream	0	0	0	0	0	0	0	0	0	0
GGGAATTTCAGACCAT	alt_1150_reverse	67	97	81	66	128	50	139	59	137	38
GCCCTCAGGATTGCTC	alt_1150_reverse	13	13	13	13	11	11	15	13	19	9
CATGTTCTTGGTTCTC	alt_1150_reverse	2	17	8	9	14	6	14	3	10	7
TTACTGGGCGGGTTGC	alt_1150_reverse	29	63	48	36	77	30	56	29	73	36
AGTTCCACGTATGCCG	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTCGCACACTTTG	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
TTTGAAATTTTATGTT	alt_1150_reverse	63	100	72	76	86	68	96	51	81	71
ATGTTCACAATAACGT	alt_1150_reverse	11	10	8	9	12	5	13	5	14	9
CTCACTATGTCTTAGC	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
AGATTTCGGATTAAAC	alt_1150_reverse	7	4	6	2	6	2	5	6	7	6
TCCGTAGCGTTTACAT	alt_1150_reverse	23	42	30	39	44	14	39	27	38	33
TGATCCTTTATATTCG	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTCCAGAAATTGA	alt_1150_reverse	8	25	20	15	27	14	23	10	24	20
CATAGCAATCGGGTGC	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
TAGATATCTTAAGTGG	alt_1150_reverse	20	40	20	17	34	12	43	17	30	15
TGTCCGGCAACTATCC	alt_1150_reverse	12	36	18	21	51	12	21	14	38	17
ACTTTTCACCATGGAG	alt_1150_reverse	22	31	34	30	38	27	27	28	25	33
TTCCGCTGTGTATGTC	alt_1150_reverse	7	16	13	6	24	6	18	6	17	3
TAGTGTCGCGTGATGG	alt_1150_reverse	28	35	23	9	18	18	22	16	25	9
TGTGTTATGCGTTCCC	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCATTTCGGATTC	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCGGAATCAGCCA	alt_1150_reverse	6	3	5	2	9	13	9	11	12	6
ATGATTTGCTTCTCCG	alt_1150_reverse	21	13	21	12	26	14	29	27	15	19
AGTGTCTTGTGTTAAG	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
TGAAAAACTGGGAAGA	alt_1150_reverse	57	83	72	60	65	57	100	54	93	62
CTATGTCAGGAGAAGG	alt_1150_reverse	3	4	0	2	4	1	4	2	3	4
CGTGAGTATTATCATT	alt_1150_reverse	10	3	2	11	8	5	10	4	8	6
AGTTTACGGTGGAGAG	alt_1150_reverse	61	113	89	89	133	75	122	62	135	76
GTTAGCTGTTATGTAC	alt_1150_reverse	42	112	59	38	112	51	148	38	124	46
CGAGTGTGAGACTGGA	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCGTTTAACCCGC	alt_1150_reverse	1	2	2	0	0	0	1	0	1	1
GAAAGATAACAGCGGG	alt_1150_reverse	10	17	16	12	24	12	16	10	18	8
TTGTTCACTCTGCAGT	alt_1150_reverse	41	89	94	53	90	45	111	43	83	47
CAGCTTGGTTTTTCGC	alt_1150_reverse	18	24	13	10	22	12	26	9	29	13
TCATAGGGTAATTTTA	ref_1150_reverse	8	14	24	15	20	9	23	19	27	6
GCTATTAGTGGGGGTG	alt_1150_reverse	8	17	11	15	16	8	15	10	21	11
CGCAACACTGTACATT	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
AGATTTACATTCTCGA	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
CATGTGCTAACTACTC	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
ATTATGACGCGAGAAT	alt_1150_reverse	26	37	35	26	43	25	37	15	48	30
GCTACTGACTCCTTGG	alt_1150_reverse	22	33	25	20	41	21	30	16	42	22
CTAGCCCTCGAACGTT	alt_1150_reverse	7	11	9	14	17	10	17	7	20	8
ACTGGTAGATAGCCCT	alt_1150_reverse	20	31	21	25	22	23	32	5	42	21
ATTTAACCATGGTTAC	alt_1150_reverse	7	16	11	11	15	8	12	6	10	12
CGCTTGGCATGTCAGG	alt_1150_reverse	43	68	53	55	78	43	72	48	108	27
CTGGATGAACGGGCAC	alt_1150_reverse	18	20	21	15	25	24	25	16	36	18
CTACTCGTATGTAGAC	alt_1150_reverse	25	25	32	31	27	26	27	29	38	28
CCATGGCTCGGTAAGT	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGGCTCGGTAATC	alt_1150_reverse	4	3	1	1	3	6	10	3	5	1
GCAGTATGTAGCAGTC	alt_1150_reverse	11	9	11	10	9	5	10	5	19	3
TCCCTGGATCCATCGG	alt_1150_reverse	33	73	30	32	54	37	53	36	60	26
AGTTGCCCAAATTTTA	alt_1150_reverse	55	80	62	40	73	52	83	48	108	53
AGAGACATGGCATCCC	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTGGTACGGTATT	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTAGCCCAACTGT	alt_1150_reverse	61	91	75	82	97	78	109	54	112	51
ACATTCGCAAATGCCA	ref_1150_reverse	47	77	51	50	70	37	62	28	68	43
ACATTAGCAAAAATTT	alt_1150_reverse	2	2	1	1	1	2	3	7	7	5
TTTCCGGTTCTAATCC	alt_1150_reverse	23	34	52	30	38	30	51	21	56	28
AAGTCCTGCATCGCGC	alt_1150_reverse	4	10	5	4	8	2	12	5	13	5
CTATGGACTGACAGTA	alt_1150_reverse	25	22	17	12	21	11	17	10	27	18
CTCCCCGCATCTCATG	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCGCCTATTAACG	alt_1150_reverse	11	16	21	16	22	14	22	8	20	13
CGAATCCCGGTCTCCA	alt_1150_reverse	16	33	23	9	43	14	37	17	39	16
CCCGCACCGGCATAGG	alt_1150_reverse	13	17	12	18	22	10	26	9	30	19
TAGGATGTTACCATTC	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
GTTAGTCTTACGTCTT	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
CACTGTTAACTTCACA	alt_1150_reverse	44	47	32	28	29	27	57	28	41	18
TCCTCCATTGTTCCTT	alt_1150_reverse	9	14	11	5	7	5	15	7	10	4
TGGAAGTCTTCGTGTT	alt_1150_reverse	21	35	38	38	33	24	31	27	44	30
ATGTGGTAATGATGTT	alt_1150_reverse	0	0	0	0	0	0	0	0	0	0
CATACCATCGTATGGC	alt_1150_reverse	52	57	49	45	53	33	51	39	62	39
AACGCGCGGTCATCCT	alt_1150_reverse	113	145	126	110	99	114	142	96	136	112
CCAGATGACATCGTTT	ref_1150_reverse	3	59	20	11	59	5	52	10	54	6
TTGTTTCTGAATCAGT	ref_3426_upstream	9	3	4	8	4	5	4	6	0	4
CATTATAGCTTATCAG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCTGAGGTTCCCTTTC	ref_3426_upstream	16	7	22	9	12	15	16	13	16	15
ACTCCCGTATGTAAGG	ref_3426_upstream	3	2	2	1	7	4	1	0	5	0
TAATTCGTCCTGATTA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGGGCCAAACCGA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTGGACGCTAATTTCA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CGCCATATACTAACAG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTTGTTTGTATCG	ref_3426_upstream	6	2	8	6	4	8	8	9	4	8
CGTTACCCCCGGCTTC	ref_3426_upstream	22	9	23	16	18	20	14	15	4	16
GGTAAGATACCGGTCC	ref_3426_upstream	5	3	9	7	1	7	4	7	0	3
GTATAGGCCCACCTTC	ref_3426_upstream	18	5	37	28	17	26	23	23	21	14
GCAGGCTAGCGTGTGA	ref_3426_upstream	22	25	26	28	20	25	22	31	16	25
CGCCCGGTCTCTCGGA	ref_3426_upstream	75	76	82	98	100	83	69	85	73	83
TTTTTGTGGAGTGTAC	ref_3426_upstream	35	31	57	43	22	50	39	30	25	35
GATGTCTACCTATTCT	ref_3426_upstream	53	30	67	63	46	63	50	62	38	42
TACCATGACGTAGCGC	ref_3426_upstream	30	36	36	48	40	42	44	46	39	42
CAATTGATTTGTCTTT	ref_3426_upstream	75	38	64	64	41	61	36	58	38	57
TGTCTTTTGCGCCGCT	ref_3426_upstream	6	4	7	10	4	7	3	9	2	0
CGGCAGACCTCCTAAT	ref_3426_upstream	33	28	36	43	25	27	21	37	20	26
GGCTTGCTCGACTGGT	ref_3426_upstream	41	28	57	51	20	50	31	70	27	31
GGGCTCTAGGGACCGA	ref_3426_upstream	94	74	155	125	75	121	71	123	82	103
AAGTCGCCATTGGTCA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACGCAGGAAGTC	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCCTTCGTGCGAA	ref_3426_upstream	5	2	6	4	1	6	7	4	1	0
AGGTTAGCTTTGTTTT	ref_3426_upstream	26	27	39	30	17	35	21	27	30	30
TTTTCGAACAATGCCA	ref_3426_upstream	3	8	7	8	6	5	9	4	8	7
TGTGTAAGGACCACCG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCGTATAAGGCCG	ref_3426_upstream	10	9	14	16	9	6	5	13	7	11
TGATTCCCACAGACTG	ref_3426_upstream	39	32	57	34	28	43	21	43	31	51
CCGTTTCTCCGACCTA	ref_3426_upstream	0	4	1	5	5	1	5	2	7	2
CACAATAACAATGCCA	ref_3426_upstream	132	70	129	127	106	101	80	129	92	119
AATTCTCGGACTAACA	ref_3426_upstream	10	7	8	14	11	11	8	13	12	14
GAGGCTATTTTGACTA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GATTACACGTTCGCGC	ref_3426_upstream	79	51	99	71	67	64	59	77	56	62
TCCAGTATGGCACAAT	ref_3426_upstream	30	44	51	30	21	19	55	42	44	26
ACCGCTTGAGTAATTA	ref_3426_upstream	19	12	17	14	12	16	14	13	13	23
AGTGGTGCCGATGGGG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CCCTACACAAGTTTCA	ref_3426_upstream	8	6	11	7	8	9	6	5	6	9
TCATGTCTATGATGCA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GACTTAGGCTATCTAT	ref_3426_upstream	56	44	78	63	34	37	36	47	31	34
ATTTGCCGTGGGGTCT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTGTTCTTGCTGA	ref_3426_upstream	97	49	142	110	58	104	62	96	75	97
TAAATGGTAGGTTTCG	ref_3426_upstream	220	144	275	286	186	223	156	223	168	193
TCAACAACTTTTAGTT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CCGGACCTTCCACTGT	ref_3426_upstream	6	19	10	7	19	8	15	10	23	8
GCCGGTATGTACAGGA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTTCTGTGAGCGT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GTCTAGGCCTCCGTTT	ref_3426_upstream	67	48	85	64	50	54	51	63	40	76
TAACCCAGGTGTCGTT	ref_3426_upstream	31	17	38	22	28	29	23	20	20	19
GTCAAAATATATGTAT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCTCTTACAGTTT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
AGACATTTTATGCGGG	ref_3426_upstream	12	12	28	16	15	21	16	22	14	16
ATAAGGGAGCTGGACC	ref_3426_upstream	33	32	64	47	26	37	24	30	36	36
GCCGGATGCAGGCCCA	ref_3426_upstream	26	10	15	13	11	21	9	21	16	14
AGTAACATGTTAGGCG	ref_3426_upstream	57	39	88	74	24	60	40	53	47	68
GCGGAACTCCGGCTTT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GCAAGTGGACAATTTG	ref_3426_upstream	135	77	172	133	84	135	91	110	90	116
AATTTGGATGATATAG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
ATGATTCGTCATTTGG	ref_3426_upstream	17	10	39	25	11	26	13	15	14	25
GTTGGTCGCACTCTTG	ref_3426_upstream	14	10	28	10	11	13	9	22	4	24
GCGATTTGGAAGAGGG	ref_3426_upstream	33	26	27	25	13	21	13	27	21	35
GTACAACTAAGCGCCC	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TTACTATTATGCTTGG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGCACTATAATGC	ref_3426_upstream	28	10	15	22	10	17	21	14	11	15
CCTCCGGAGTCTGTAT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATGATCTTTCTT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCGGGTATTATCG	ref_3426_upstream	36	8	29	20	19	29	18	24	23	20
CTCTTCGCATTTTAGG	alt_3426_upstream	24	32	36	37	17	36	20	23	15	22
ATCACTCGAGACCTTA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAAGCTTTTTTCA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TATAAATGGCCCGGCC	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCATCTTGTAGGGTTG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTACTGTCGGATG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCTGGGCTTAAGG	ref_3426_upstream	2	2	2	3	2	0	1	2	1	1
TGTTCGTTTACTCAAT	ref_3426_upstream	4	0	3	1	2	3	1	1	1	1
TACCGTAGAACAGTCG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGTCATCACTGGC	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCTACGGCGTCTGTTA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGTAAAGTCCTTG	ref_3426_upstream	32	19	36	36	24	18	14	29	20	23
CGTTGGTGTAGCATAG	ref_3426_upstream	21	26	28	22	25	23	32	29	32	18
CCAGTTATCGTAGGGT	ref_3426_upstream	37	20	43	45	24	49	30	25	17	34
GCCAAGGAGTTTGATT	ref_3426_upstream	34	34	70	63	43	45	34	36	54	32
TGTTTGTCAGGGGTTG	ref_3426_upstream	36	31	50	51	21	45	19	31	18	27
CAAACGGCTTGACTCT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTCCCTGTGATTG	ref_3426_upstream	23	40	26	29	21	12	27	17	33	16
AGCCCATGTCTATCAT	ref_3426_upstream	17	16	17	16	21	5	12	13	20	9
AACCTGCATACCCCCA	ref_3426_upstream	56	24	49	42	29	34	30	35	33	39
CAGGCTCCTATTCCTG	ref_3426_upstream	3	3	9	8	5	3	5	17	5	4
TGACTCGCACTTTCGT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
ACGCGGGTGAGGCTGG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTCCTGACAATGG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTTTGGGCTTGT	ref_3426_upstream	36	28	35	39	24	38	19	36	24	34
AGCATCCAATGCAGAC	ref_3426_upstream	73	53	123	113	79	81	62	90	55	82
GTTTGTGCACTGAACT	ref_3426_upstream	50	55	103	79	69	69	53	62	89	77
ATCTGCGCCCCAGGCG	ref_3426_upstream	100	61	104	116	74	103	73	89	80	75
ATTTAGTACAAATTTG	ref_3426_upstream	49	26	61	46	34	63	31	55	35	44
ACCAGGCAAGTATATA	ref_3426_upstream	25	11	43	42	24	40	23	25	29	20
ACGGACATTGTTATCC	ref_3426_upstream	18	18	21	20	19	19	13	8	13	18
GGCTCACATGTCGCTA	ref_3426_upstream	95	65	104	127	70	88	68	104	66	98
CTAGCGTTGCTAGTGG	ref_3426_upstream	11	12	16	15	13	14	8	18	9	10
GCCATTGCTTGAATAT	ref_3426_upstream	125	58	102	109	72	76	82	86	64	90
TCGTATGTCGCCCGTC	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTGGACTAGCCGT	ref_3426_upstream	123	78	162	128	83	111	116	105	91	136
TTCTTTAAGGGTTTTG	alt_3426_upstream	95	77	114	89	63	90	71	69	78	88
AAGAATGTCATTTGGG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTGCGGGCCGGGC	ref_3426_upstream	5	4	15	4	4	8	3	8	3	2
TCTCGGGATATGTCTA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
ATATTTGTAGTTATCA	ref_3426_upstream	3	4	4	4	0	4	3	0	4	0
GCTATCGTTGTTAAGC	ref_3426_upstream	5	3	5	8	4	5	4	0	4	7
GTCCAGAATACTTTAC	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GGACTGGAATCGATTC	ref_3426_upstream	26	14	31	22	17	18	11	15	22	23
CTGGTCTTGACCATGA	ref_3426_upstream	39	31	20	22	40	26	27	24	34	24
TCATAGCTAGGATTTG	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
TGTAATGGAATACATC	ref_3426_upstream	43	31	91	69	40	46	51	51	25	70
GGTTACTTTGGCATAT	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTCTACTTCGTTG	ref_3426_upstream	40	31	64	32	27	40	40	47	27	30
ATCAGACATTATTTCA	ref_3426_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGACGGGATTAAT	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
CTATAAGTTGCAGAGC	alt_2027_fdr	31	27	65	35	22	47	22	38	33	28
TCGACGAACATAGTGG	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TATTTCAAGGGGGGAC	alt_2027_fdr	8	9	10	9	8	8	15	10	3	7
ATGTCCGTGCCTCCGA	alt_2027_fdr	21	7	25	25	9	18	15	18	9	16
TGAATATACTAAAGTT	alt_2027_fdr	254	171	339	258	179	243	155	241	171	196
GTGTTTCGGCTCGTCT	alt_2027_fdr	40	20	34	34	20	34	19	38	27	52
TGACATATGTGTTACC	alt_2027_fdr	12	5	21	15	13	12	6	10	11	20
GGTTTCCCGATACGAG	alt_2027_fdr	11	7	10	8	3	13	5	6	4	5
TTGAGAATTCACATCC	alt_2027_fdr	14	6	16	19	8	17	13	20	4	15
TTTATTATGGCATTGT	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
AAATAGGCGCCAAGGT	alt_2027_fdr	4	2	6	5	0	2	2	3	2	2
CCGATGGAACATCTCC	alt_2027_fdr	28	39	41	39	35	29	41	26	24	17
GGACTCCTGTTCATGC	alt_2027_fdr	35	78	48	45	96	50	71	40	88	34
TGACGGTGAATCTCAT	alt_2027_fdr	94	51	146	120	37	93	61	113	68	105
TCATTGCTCATCGAAT	alt_2027_fdr	23	21	28	30	17	24	13	29	22	34
TCCCTCTTGGTAGTCC	alt_2027_fdr	80	33	70	55	33	67	36	50	42	55
GGCCGTTAGCAACTCC	alt_2027_fdr	27	15	41	27	18	28	28	23	16	18
ACGATCTTTCATTCTC	alt_2027_fdr	161	61	206	153	58	149	93	144	81	144
CAGAGTTGCACCTTTT	alt_2027_fdr	213	122	234	205	130	181	107	216	121	196
GTTCCCCCCGAAGATA	alt_2027_fdr	18	21	19	7	23	11	27	15	27	16
ATAAGATATTGGTTAC	alt_2027_fdr	82	56	135	93	60	98	72	109	84	85
TGTGTACCGCCGGCTA	alt_2027_fdr	8	12	15	12	12	11	12	17	5	14
TTTTCTCTGGTGTTAT	alt_2027_fdr	150	95	215	178	81	156	81	166	105	151
TTAAAAAGTGTTAGCT	alt_2027_fdr	84	54	103	67	50	89	51	63	51	64
CAGTGTGACTGCCAAT	alt_2027_fdr	61	18	61	66	35	46	40	48	21	51
TCCTTAGCTGTCTTTT	alt_2027_fdr	87	77	98	84	63	76	55	68	71	75
CTTTTTAGTCCTCTTA	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TAATACTTTCCAGTTC	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
CGCAAGTAACTACATG	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TGATGTCGCCCCAGTC	alt_2027_fdr	15	15	18	21	7	18	9	22	8	15
ATGTCCTATTCCGTAT	alt_2027_fdr	94	61	103	86	63	77	65	61	64	85
CCTTTGACTCGCGCAC	alt_2027_fdr	51	49	63	59	31	62	41	58	41	57
CTTGCTACCTGATATG	alt_2027_fdr	20	20	23	26	15	26	20	23	14	23
TAGGCCTAACTATTCA	alt_2027_fdr	112	74	123	116	96	103	82	107	70	95
GGGATGAACTTAATAG	alt_2027_fdr	149	155	195	141	134	149	126	148	154	161
TTTTAAGTAATTAGTT	alt_2027_fdr	18	11	21	14	7	12	5	17	12	11
ACGTCACATGAACTGA	alt_2027_fdr	41	17	43	30	22	45	25	32	19	27
TTAATGCGCCGCGCCG	alt_2027_fdr	70	38	76	83	46	58	45	60	54	66
TTAGTCTTCGAGCCTG	alt_2027_fdr	28	13	30	18	22	36	18	18	13	21
GGTCTGGCATGTATGG	alt_2027_fdr	51	24	43	44	19	41	28	37	22	43
CAATCTGCAGAACGAT	alt_2027_fdr	12	7	9	8	6	9	6	9	3	12
TTATCACAAGTGTCCT	alt_2027_fdr	30	6	12	12	14	11	6	14	5	10
GGTCAGAGATGCGTAT	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCGGCGTACTGTT	alt_2027_fdr	50	20	46	56	24	37	28	46	34	32
CTCTCGAACACCTCTT	alt_2027_fdr	13	9	25	24	12	15	10	21	6	15
CGTCTATGAAGTTTGC	alt_2027_fdr	48	31	51	58	30	56	38	67	40	38
CTGACTCGATCGTAAC	alt_2027_fdr	87	87	106	81	56	97	54	88	68	89
GCCAAAGTGACATATA	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
ACTCAGCCTTATACGA	alt_2027_fdr	10	10	15	10	15	8	18	8	9	9
TTTCAATTACTTGCTG	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTGCAAATATGCG	alt_2027_fdr	72	42	87	72	35	44	45	68	40	62
TACTCACCGACAGCAG	alt_2027_fdr	53	103	87	54	98	54	88	56	99	33
AGAAACGGCCAAGGTT	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTCATCTAGTTGG	alt_2027_fdr	51	27	64	66	55	62	59	41	49	59
GGTGCTCTGCGTTCTC	alt_2027_fdr	15	9	28	26	17	24	11	30	14	17
TCTACAGCTATCGAAA	alt_2027_fdr	34	48	55	51	48	45	47	39	53	35
TAACATTTAGGTACCG	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTTGTATTTATT	alt_2027_fdr	7	7	24	19	12	5	6	20	3	9
TAGGGTGAGAATGTGA	alt_2027_fdr	16	10	30	21	9	10	11	17	9	9
GCAGTATATGTCTAAG	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
CTATCAATCTTTTCAT	alt_2027_fdr	17	3	16	19	9	26	11	10	10	10
TTACTGTCTGGTTTTA	alt_2027_fdr	207	91	281	229	106	195	123	185	119	162
ACGTGTTCTCCATATA	alt_2027_fdr	105	92	117	125	110	79	95	115	97	108
CCCGCCCGGCTAACAA	alt_2027_fdr	55	46	42	55	34	60	44	33	53	45
CTGTTTAGCGCGCCAC	alt_2027_fdr	22	9	27	13	11	17	12	15	14	18
AAGTCGCCTTCATTAA	alt_2027_fdr	2	1	4	2	1	1	2	1	1	2
TAGCACGTACCCGCCG	alt_2027_fdr	135	83	145	100	97	99	107	83	102	113
CGAGGTCAATACAACA	alt_2027_fdr	11	9	19	14	7	13	6	8	10	19
TTTATTATGGCATTAA	alt_2027_fdr	34	29	39	27	27	29	17	38	24	39
TGTTGTCTTGGCCGGA	alt_2027_fdr	361	259	448	348	255	335	244	337	268	300
GGCCCACACGGTCAGA	alt_2027_fdr	45	85	41	26	73	28	67	45	85	41
GTACTCTTGAAGTGTC	alt_2027_fdr	24	27	33	32	25	23	26	18	14	25
TTGTGATTCCCTAGAG	alt_2027_fdr	15	8	26	14	8	9	8	16	10	12
TTTCAGTCAATTTTAA	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
AAGTAGATGTGTATCC	alt_2027_fdr	30	10	28	31	16	21	23	19	14	25
AGCTTTACGATACCGC	alt_2027_fdr	12	6	10	15	9	17	9	16	7	12
CCGTTTGTGCATTATC	alt_2027_fdr	12	7	23	13	6	12	7	16	10	12
GTACTCTTGAAGTTTC	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TGACCGAGTCGATCCT	alt_2027_fdr	378	197	438	425	243	379	218	304	259	327
AGGTGCACGAGTGTAT	alt_2027_fdr	40	22	37	31	14	30	14	25	23	39
GATGGTGTCTGTACAT	alt_2027_fdr	76	41	95	49	33	78	45	72	37	65
GTTCTGTCGAGTCGTT	alt_2027_fdr	39	39	53	48	35	47	18	45	37	49
CATACCGCTCTGTTTG	alt_2027_fdr	75	47	122	84	60	66	51	76	50	71
TAGGTGTCTCTTATTA	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGGTATCTAGCC	alt_2027_fdr	19	17	14	18	18	15	31	12	19	21
CGTTGCAGAAGGAACT	alt_2027_fdr	32	10	34	35	11	21	18	17	9	21
TGCCGATTCATTGTGA	alt_2027_fdr	21	14	23	22	20	28	19	24	14	16
AGAATATACTAAAGTT	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
AGCCTGAACTGTACTT	alt_2027_fdr	57	32	81	48	37	63	53	45	44	52
CCTGGATTACACCTAG	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
GGTATGGCTGGATTGT	alt_2027_fdr	16	9	22	18	12	25	9	19	10	17
GTAGGGGTTCCCGTTG	alt_2027_fdr	50	61	55	65	43	48	51	56	55	37
AATCATGTTGGGTCGT	alt_2027_fdr	121	67	163	116	77	140	80	144	81	123
GACGAGTCTAGATGGC	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
CTGATGCCACACTCGT	alt_2027_fdr	92	58	110	111	70	112	70	99	74	108
CCGACTTGGTATACAA	alt_2027_fdr	55	33	45	45	43	41	29	39	33	39
TAATTTGTTCTAGCCT	alt_2027_fdr	12	4	13	10	11	11	7	13	9	19
TATTCTGCGCTCAACT	alt_2027_fdr	73	35	101	68	36	76	40	70	44	74
AACACGTTGTCCGCCT	alt_2027_fdr	89	46	103	108	43	70	56	72	38	72
GCCGAACCCGCACCAG	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
GGTAACATAGCCACCT	alt_2027_fdr	81	43	100	84	49	58	57	57	56	80
TATCCGTGGGTCTAGT	alt_2027_fdr	9	7	10	5	10	9	7	13	10	12
GCTTGTAAAACGCAAT	alt_2027_fdr	3	2	3	0	0	0	1	0	1	2
TAACACGGTTTGCCTG	alt_2027_fdr	80	28	91	82	46	77	31	67	33	59
TGCTCCAGGCCTCTGA	alt_2027_fdr	24	21	43	30	32	20	25	28	22	18
GTGGTGCTTCAGTGTC	alt_2027_fdr	80	59	99	82	73	80	77	79	80	83
GAGTTATTAATGGCAG	alt_2027_fdr	79	49	111	85	45	63	47	71	49	71
CGCATCAGAATAGCTA	alt_2027_fdr	23	13	27	32	7	23	15	27	17	30
TGCATCATATCTCGCA	alt_2027_fdr	0	0	0	0	0	0	0	0	0	0
TGCTAGTAATTATTCG	alt_2027_fdr	28	20	23	29	6	20	25	25	20	29
TCGATAAGTCGGCCAA	alt_2027_fdr	129	93	156	132	83	162	83	141	98	103
CTCTATTGAAGTGTAC	alt_2027_fdr	34	38	52	49	46	29	37	63	42	30
TTCGGGATTTTAGTTG	alt_5665_new	5	6	3	3	5	0	5	1	4	4
AGGATCTCGGCATGCC	alt_5665_new	17	53	21	19	31	19	39	24	51	16
TCCGACGGGAGGCTCG	alt_5665_new	16	25	14	14	34	26	35	17	35	11
TGTNGTTCTGTTGTTG	alt_5665_new	0	0	0	0	0	0	0	0	0	0
TGTCGTTCTGTTGTTG	alt_5665_new	417	663	471	410	637	391	703	397	769	380
TCCCCTATTTCCTCTA	alt_5665_new	2	17	2	2	11	3	10	0	9	1
GGATGTGGTATGTGGG	alt_5665_new	22	44	31	38	26	29	48	21	54	26
ATAACGGAACGTGCAG	alt_5665_new	0	0	0	0	0	0	0	0	0	0
TAGCTTGGAGCTTTGT	alt_5665_new	3	11	6	7	3	2	6	4	6	2
AGGTCACGTTCCAAGC	alt_5665_new	13	40	28	28	43	22	54	23	46	13
CCATTTGTAGTAAGTT	alt_5665_new	5	24	14	10	25	10	32	9	31	7
ATAACGGCACGTGCAG	alt_5665_new	0	0	0	0	0	0	0	0	0	0
AGTGAAACTGTTCCTT	alt_5665_new	14	18	14	7	11	9	21	10	14	5
TGACATTAGATCCGTT	ref_5665_new	30	34	20	31	32	13	38	24	38	26
GCTGACGTCCGTGAGC	alt_5665_new	6	3	2	2	9	3	6	2	6	3
ACTGAGCCTGCACGTC	alt_5665_new	9	17	10	3	9	1	16	10	12	6
AACCGGCGTACTACCG	alt_5665_new	10	29	9	5	16	5	32	12	39	14
TGGGCTCCCTTTCGTA	alt_5665_new	10	17	7	5	21	11	12	5	19	9
TAGGGACAGCTTGATG	alt_5665_new	0	0	0	0	0	0	0	0	0	0
CGTACGGCTTTTCAAC	alt_5665_new	33	53	25	31	57	32	57	34	70	21
CATCTGGAATATCCGT	alt_5665_new	0	0	0	0	0	0	0	0	0	0
TCGAGAAGCTGTCCTT	alt_1847_missing	28	18	38	27	14	25	15	22	21	30
TCGCATTATCCTCGGT	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCCATTTTCTTT	alt_1847_missing	22	20	26	24	10	16	18	24	21	15
AGTGCTTATAGACCCT	alt_1847_missing	33	11	27	34	20	28	17	25	14	16
ACACCATATCACGAGC	alt_1847_missing	16	14	21	5	11	11	15	8	14	15
ATGGAGATGATATTTT	alt_1847_missing	17	9	26	16	7	20	16	17	10	23
AAAATCTGCACGTTTG	alt_1847_missing	92	81	95	98	62	79	80	91	82	82
GGTCCCGTTTCGGAAC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
AGAATCGCCCTGCTCG	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
GCCATGGAGTTCTTCA	alt_1847_missing	152	140	149	144	120	149	121	115	127	127
TAAGTGTTTCGAACCC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
GCCTTTCCTACTAATA	alt_1847_missing	18	19	16	20	23	16	11	16	14	6
GGCCATTTGGCGACCC	alt_1847_missing	35	24	31	22	19	26	23	31	28	27
GTGCCGATCGTCTTAG	alt_1847_missing	13	34	19	26	34	16	28	27	41	17
TGTATTCTGTGCATCA	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
ATTAAGATAATTTGCG	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
AATCATGCTTAGGCGA	alt_1847_missing	16	7	15	13	7	13	11	8	13	7
TCGGTTGCCGTCGGAC	alt_1847_missing	34	29	34	38	31	25	34	27	32	20
AGAATTAGTTTGCCAT	alt_1847_missing	9	13	8	10	4	9	8	14	7	9
TATGCTCCTAGGGACC	alt_1847_missing	25	18	25	26	16	25	29	19	28	22
TGGTGAAAGGACTTTT	alt_1847_missing	101	65	134	113	85	100	106	117	86	111
ATTCGATATCCTCCTC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TGGAGTTTCCTGTCAC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TCACTACCCCCGGCTC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TTATCATTTCATAAGA	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
CGAACAGACCCGGGAT	alt_1847_missing	23	13	17	14	11	22	17	21	12	10
GTAGCAACCCCAAATA	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TAAAAAAAGGAGTCCA	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
GTCTGGGCCATCGATG	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
GGTAGGGAGGTCAAAG	alt_1847_missing	3	3	2	3	2	6	4	5	5	0
CTTGTCTCGTATAGCT	alt_1847_missing	35	63	79	52	51	48	62	45	54	54
AAGAGTTGTTTGATGA	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TGATGTATTTTTCAGG	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TGGTTGGTGCTGGGGG	alt_1847_missing	135	86	166	172	131	143	106	143	117	122
CTACACAGATGTGGTA	alt_1847_missing	8	10	12	10	7	14	5	14	9	7
GATATGCGTGGCTCAG	alt_1847_missing	46	35	52	40	38	51	43	37	43	48
TCATGCCGTTAGGCAC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
ATCTTTGCATAGCTCT	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
GTCCATTAAAGGACTG	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
CTATGCATATCTAGAA	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
GTTGCTAATTAGCAGC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
CTACCACTATTTGGCG	alt_1847_missing	148	162	223	203	190	173	178	164	196	173
CCATAGGGTCTCATGA	alt_1847_missing	28	13	32	20	25	8	11	30	24	17
TATGCCGCCTTAAAGA	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TGAATGCAGCATCGTT	alt_1847_missing	47	35	70	56	52	63	38	46	48	33
CCTCTCCAGCTAACCT	alt_1847_missing	22	26	35	28	25	27	24	17	29	16
CTTTATCATCGTCTAC	alt_1847_missing	61	54	50	47	30	39	40	54	68	44
TCATCCCCTGTCCTTT	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
TTACCTCGCACACTGG	alt_1847_missing	14	9	22	20	6	11	11	18	15	7
GCTTATGAACCTTCTC	alt_1847_missing	8	12	24	12	20	13	20	14	23	20
GGTACCGTTTTGTCCC	alt_1847_missing	0	0	0	0	0	0	0	0	0	0
AAAGGATTATCCGAAT	alt_1847_missing	8	3	8	14	6	7	8	4	5	9
GGTTTATTCGCGTCGA	alt_1847_missing	22	16	22	33	15	27	21	17	26	22
ATTCTAGTCATCTAAG	alt_1847_missing	21	7	11	10	12	12	13	8	10	18
GTCGACAATTGCCAAA	alt_1847_missing	83	71	96	86	69	76	71	70	75	67
ATGGCTACTGTTCTTT	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTTAGCGGCCCA	alt_306_fdr	36	18	28	26	34	30	32	18	41	19
GATCCGGATGCACCTT	alt_306_fdr	30	19	20	15	17	14	22	13	27	22
GGCCTAACGGGCGTCG	alt_306_fdr	33	33	25	35	25	33	21	33	38	18
TCTTTTACTCCTCGTA	alt_306_fdr	13	22	17	17	21	14	31	14	25	5
ACCGCGCCTCTACTGC	alt_306_fdr	6	28	11	18	46	13	46	12	36	11
GTGGACCTCCAGCGTC	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TAGCATAATTTTGTAC	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCTCTGCGTAGGG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CTATATTCGCATTGTA	alt_306_fdr	21	26	18	19	20	13	18	10	24	16
TCGATGAGATTCCTTA	alt_306_fdr	14	17	27	26	16	21	15	11	17	11
ACTGACCTCAGGTAGG	alt_306_fdr	8	13	2	5	12	7	4	6	15	4
CAGTTTTATGAGCCGT	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCGAGCCCTAGGG	alt_306_fdr	9	16	8	13	11	7	11	10	6	7
TGCAGTGTGGTAACGG	alt_306_fdr	12	6	6	5	8	1	10	3	6	2
CCCATTTGGTCGGGTA	alt_306_fdr	19	18	23	11	15	13	21	21	18	13
TTATATTTCATCTTTT	alt_306_fdr	2	14	11	12	8	5	5	3	9	8
TGTTTCTACTGGTCAA	alt_306_fdr	10	12	11	7	16	15	15	14	20	5
GTACAACTATGATTGG	alt_306_fdr	2	5	2	2	4	2	3	3	2	2
TAGTAATTCTTTACAC	alt_306_fdr	9	16	20	12	14	16	15	12	10	15
TCGGTGTTCGTATCTA	alt_306_fdr	37	65	46	38	49	38	63	42	69	37
CATAGGGAGGTTCGTA	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTCTCAATGTTTG	alt_306_fdr	16	11	12	11	11	8	10	13	11	7
CTCATATATTAAGGCC	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTCGTTTTAGTAG	alt_306_fdr	18	50	26	24	51	32	40	22	43	29
GATTTTGTGTCGGTTC	alt_306_fdr	8	12	12	15	10	14	15	13	24	8
AAACACCACAAGGCGA	alt_306_fdr	1	7	3	3	5	4	2	3	2	4
CAAATCCTAACGTTAG	alt_306_fdr	5	7	7	4	14	3	8	9	9	8
AGAAAGATACACGATA	alt_306_fdr	47	65	70	79	46	60	60	43	77	43
CTATGCAGTGCCGTTC	alt_306_fdr	29	16	34	21	45	20	31	31	35	20
TTTCCTTGGTCGGATG	alt_306_fdr	12	16	16	9	11	10	18	17	14	8
CCTTTGTGGTTTTCGG	alt_306_fdr	86	87	75	64	98	82	88	56	90	58
CTTTGATCATAATTCC	alt_306_fdr	14	5	20	8	12	13	15	8	12	13
ACGCGGTCTGCCGCAA	alt_306_fdr	35	29	40	32	35	24	33	29	41	37
CCTTCGACATCGGTTT	alt_306_fdr	26	36	31	28	50	24	29	19	44	27
ATCATCTAAGTTTTCC	alt_306_fdr	0	0	0	0	0	0	1	0	1	0
TTGTGGATGGTGTGGC	alt_306_fdr	32	27	45	23	36	25	41	25	42	37
AATCGCTCTACCTATC	alt_306_fdr	28	37	36	24	34	26	36	31	41	25
ACCCGTCGGACGTTTC	alt_306_fdr	26	36	20	21	38	28	35	18	38	22
TTAGTGCTGCGTCCCC	alt_306_fdr	25	44	42	39	29	36	58	18	27	28
ACGCCGGCCGGTATTG	alt_306_fdr	74	90	74	83	96	67	88	84	92	56
ACTTGGGCTTTCCCCA	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
GGACGTGCATTCTGTG	alt_306_fdr	7	11	7	10	7	12	9	12	12	6
AGAAGCACTCTCGGAA	alt_306_fdr	35	50	48	37	49	38	45	36	52	27
GTTATCTTCATGTGCC	alt_306_fdr	69	79	88	74	91	77	69	71	83	83
GCTTCCGCCATTGCAA	alt_306_fdr	98	83	104	99	70	87	97	69	74	60
ATCTGGGGCAGAAGTA	alt_306_fdr	7	6	13	2	5	2	17	9	12	8
TTTTTGATTTTGTATG	alt_306_fdr	20	20	27	14	19	23	26	19	15	17
GTAAGATTTAGAAGTA	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
AATCCGTAGCTCGCTG	alt_306_fdr	24	23	31	29	49	29	53	25	41	28
GCAGTCTAGGGGTCTA	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTTTACGTGGTT	alt_306_fdr	1	0	1	1	0	0	0	0	0	1
TGGTGTCGGTATCAGT	alt_306_fdr	29	23	19	18	38	17	34	14	38	28
AATAGTCTAGCATCAC	alt_306_fdr	6	21	18	14	14	22	22	14	15	11
AACGCAGTGATGGAAG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGCTCTTTTCTCG	alt_306_fdr	54	54	62	49	91	45	87	49	63	46
GCAAGTCGTAGAGGAC	alt_306_fdr	3	8	6	6	8	2	15	15	4	9
ATAACTGATTCTTATA	alt_306_fdr	31	27	36	19	22	19	37	16	32	19
AGTAATGAGCACGAGC	alt_306_fdr	19	33	27	26	40	19	38	14	33	20
TTCAAAGCCAGTAACA	alt_306_fdr	59	70	70	70	75	69	102	46	104	67
GCGCACCACCGGGTGG	alt_306_fdr	9	11	8	4	7	8	7	8	7	7
TGACTTCTATAGAGAG	alt_306_fdr	17	26	33	14	40	21	38	22	34	21
CTTGTCGTCTTGTCCA	alt_306_fdr	1	0	0	0	0	0	1	0	5	0
CCATACTGGCTTTCCC	alt_306_fdr	7	27	5	1	20	2	22	3	26	3
TCTATATAATTCCTTA	alt_306_fdr	6	11	11	8	15	4	9	10	10	7
TCTCTAAGCCAGGTGA	alt_306_fdr	11	12	18	12	13	10	22	7	6	7
CACGGGGGAAGCGGCT	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTAAGCCAGGCTC	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTGTGTTTTTGCG	alt_306_fdr	5	9	9	3	3	12	10	5	4	4
TATAAATTGACGTTTC	alt_306_fdr	18	27	24	17	11	14	7	6	21	16
TCTCAATCTGTCTCCT	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCAAGCCCCGATT	alt_306_fdr	24	35	33	28	42	19	33	21	35	28
TTCTCCAACGGGATAG	alt_306_fdr	4	3	7	4	8	4	5	5	4	3
GCACAACGGCTCGCGT	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGGGCCTAGAACG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CATCTTCTTTTCATAA	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TCACTCGTGTTATGTT	alt_306_fdr	18	14	15	11	11	9	34	11	16	13
CCCTCCACTCATAGTA	alt_306_fdr	30	50	32	38	50	31	39	38	50	13
TTTAGACGGGCCCTAT	alt_306_fdr	53	62	42	39	60	43	63	51	79	44
ATGCTAGGCGGTTGAT	alt_306_fdr	3	0	0	0	0	0	0	0	0	0
GAGCGACTACGGCTAA	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTGACAAAGCGTT	alt_306_fdr	8	13	12	8	8	8	6	11	15	9
TGAAAATTCGCTCCCC	alt_306_fdr	6	17	12	12	7	5	10	5	5	11
ATCGCCCCCATTGGGT	alt_306_fdr	26	23	27	34	33	19	24	35	39	26
GACTCGACATGGTCCT	alt_306_fdr	30	40	26	42	44	29	47	38	46	18
GTCTAGTCAACCGACC	alt_306_fdr	2	6	5	5	5	5	9	2	7	4
CGGGATCCGGCCTTTC	alt_306_fdr	11	10	13	18	33	14	22	9	26	10
TTTTACTCGTCGTCTT	alt_306_fdr	28	45	48	50	42	23	49	43	51	20
TGCTCAAATAAACCGG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGCATTCGCTATC	alt_306_fdr	11	24	20	20	14	8	14	18	26	12
TTTCTCGGGCATTTTG	alt_306_fdr	14	14	23	23	25	21	14	11	22	12
CAGTCAGTAACGCCGC	alt_306_fdr	113	143	155	117	164	115	135	137	147	118
TAAGGGACTTCCCTGC	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTTAGGGCGTTT	alt_306_fdr	25	45	42	39	42	31	35	31	44	35
CTTACAATTATTACCT	alt_306_fdr	16	37	21	22	37	11	39	17	35	18
GACTAAATTCTTTTCG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CAATCTCGGTACCACA	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCAAGAAGACTG	alt_306_fdr	7	2	4	2	5	10	4	1	2	5
GGCTGTAGATCTACCG	alt_306_fdr	5	7	8	4	6	7	3	9	8	7
GACCAAATTCTTTTCG	alt_306_fdr	56	76	79	66	100	88	106	69	92	70
GTCACGCGAGTCGCTG	alt_306_fdr	0	0	1	0	1	2	0	0	1	1
TTTGACTACTTTATAG	alt_306_fdr	131	224	190	169	228	170	215	117	222	114
CAACACTAAAACTATC	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TTCATCAATGACGATC	alt_306_fdr	18	13	13	14	9	13	17	15	15	12
TTATTGATCTAGATCT	alt_306_fdr	24	41	32	34	47	39	33	30	47	32
TCAAACTATGTTACAC	alt_306_fdr	5	8	8	8	15	10	26	4	14	11
CACCATTTTGCCAAGA	alt_306_fdr	2	4	4	0	4	2	0	3	2	1
GGCGCATCTATTGCTG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
GCCATTGACAATAATG	alt_306_fdr	31	49	28	33	49	31	39	31	40	21
TCCATGAATTTCCCGT	alt_306_fdr	8	17	18	7	19	8	27	9	17	10
GATTGTGTCACTTATT	alt_306_fdr	53	79	69	57	71	57	65	34	86	44
AGGAGCACGTAATACA	alt_306_fdr	12	13	16	11	5	7	6	9	18	10
GCCCTGCGTTGAGCCA	alt_306_fdr	29	33	51	26	43	32	36	42	32	35
AGATGTGCAACCTCCG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCGCGGATATTG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
CTATGGGGTACTATAT	alt_306_fdr	9	11	13	12	15	9	20	14	14	2
CCAGACCCGGTCTTTG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTCTACTTCTTGG	alt_306_fdr	2	6	2	0	10	1	10	2	5	3
GTTCCGATGATCTTTG	alt_306_fdr	0	0	0	0	0	0	0	0	0	0
AATGCCTTTATTGCAT	alt_306_fdr	28	27	48	37	33	43	40	26	29	19
TGGCACTTTTTTACCG	alt_306_fdr	11	20	22	15	16	14	16	11	17	10
CTAAGTACATTTGGCT	alt_306_fdr	2	6	0	4	7	2	4	2	1	2
TGCGACACGTTTGTAT	ref_1284_RC	16	16	14	10	2	12	14	11	14	5
GCTTCACTTATGCGCT	ref_1284_RC	13	17	13	12	28	12	24	10	21	13
GGATGTGACCCAGGGT	ref_1284_RC	1	0	0	0	1	1	0	0	0	0
GCCTTGGTCAAACAGG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GCCCTGTTGTCACAGC	ref_1284_RC	48	53	38	33	55	37	62	35	79	32
ACTGCATTATCCGAAC	ref_1284_RC	3	7	7	1	3	1	4	2	8	4
GACCCGTCTCCGGATT	ref_1284_RC	26	19	21	17	31	21	25	19	19	17
AGGGTTATTCCTTTAA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
ACGTAGCATAGTTGGC	ref_1284_RC	196	258	223	205	232	181	253	187	286	165
GTAGGTGTCTCTCGGG	ref_1284_RC	2	3	3	6	12	6	10	6	8	4
CTCCGCGTGCGGTATG	ref_1284_RC	28	37	27	22	57	28	50	28	47	23
ACCCCGTAAAGACGTG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TTTTTCAGCATTGCCG	ref_1284_RC	46	37	49	53	37	42	61	30	52	38
CCCGACAGAATCCTTG	ref_1284_RC	2	7	4	3	2	1	6	3	8	5
TTTTGTGCTAAATTTT	ref_1284_RC	49	69	65	63	60	55	66	42	78	57
CCATCTATCTGAATGA	ref_1284_RC	1	9	7	8	14	5	11	5	13	1
GCGTTAACGGTAATGG	ref_1284_RC	31	35	27	18	52	33	35	28	42	27
GACGTCCACTACGCGA	ref_1284_RC	14	25	29	18	22	16	30	17	28	13
CCTGAGGGCTACGTTT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
ATCGGGTGGGGTGCCA	ref_1284_RC	28	29	23	29	33	23	31	30	33	27
TCGGCTAATCGATCGT	ref_1284_RC	3	15	8	2	24	7	4	9	17	8
TTCCCTCTCCATCGCG	ref_1284_RC	26	36	43	31	26	30	32	28	49	36
ACTCTAACTAGGTATG	ref_1284_RC	12	3	2	2	6	2	9	2	8	3
TATCAAGCACCAAACA	ref_1284_RC	52	58	50	34	83	57	50	46	91	39
TTACTGGTGTCGGCGT	ref_1284_RC	54	73	53	53	69	53	82	50	64	63
TTTTGATAGTCGTTCC	ref_1284_RC	5	3	14	11	7	3	14	6	6	10
CCTCGTTTGTCCGCTA	ref_1284_RC	6	8	6	5	5	3	7	4	7	5
GACGATGGCCTACATG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CAAAAGGCGCATATTG	ref_1284_RC	7	12	9	6	16	10	11	7	15	11
TCATACTATCGGCTAA	ref_1284_RC	20	45	32	23	30	21	47	25	34	22
ATCCGTGTAGAAGCAC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TTATCAGCATTGTTCT	ref_1284_RC	12	7	8	10	18	4	10	8	15	11
GTTTTGCGGTGCACCC	ref_1284_RC	24	27	30	24	35	25	36	20	30	17
TACCGTTTCTTATCCG	ref_1284_RC	21	22	17	22	27	12	34	23	29	15
TTCATAGCGCATGCGC	ref_1284_RC	32	64	45	43	56	42	59	28	64	23
TACCTCCGATGTTTTA	ref_1284_RC	26	78	45	42	101	29	101	19	76	26
CCCTTAACTCTCATTC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TGATTTCTCGGTACTC	ref_1284_RC	6	8	11	11	8	20	8	9	26	10
ATAAGAAACGTGCCCT	ref_1284_RC	8	6	6	9	7	6	4	5	8	4
GGTTGGTTGTTTTAAG	ref_1284_RC	0	7	4	2	1	4	1	2	2	1
CTACTACTTAGCTTCC	ref_1284_RC	27	49	43	31	52	37	50	35	47	34
GCTTTACTTGAGATTC	ref_1284_RC	17	20	21	22	20	10	19	6	18	12
TAGGTTAACTGGACAT	ref_1284_RC	34	27	34	38	35	22	40	20	52	14
TGAAAGACATCGGGGA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
ACGGTTGCGCGTGGCT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CGTTGACAAGCTTACA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GTCAGTTGGTTATGCC	ref_1284_RC	102	116	109	89	88	88	103	74	105	80
TAGGCCGCGATTCAAG	ref_1284_RC	90	108	138	112	79	103	103	104	117	85
TTAATTAATTATGGAT	ref_1284_RC	48	73	54	60	85	54	74	52	75	65
TGAGGGAATTTCTTAC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
AGCTGCCACGCAGTGG	ref_1284_RC	55	74	42	44	66	38	89	64	87	54
CGCACGTCTTGCAGCC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
ACCGCTCGACGGCTGA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TGTTCGAGTACGCGCG	ref_1284_RC	17	42	26	27	27	31	39	23	32	30
TCCTTCTTACCGATTG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
AATAACCTTCGCCGAC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CACTCCTGAACCCCTA	ref_1284_RC	3	4	5	2	5	3	7	2	6	3
GTGCGACGCGCACTGG	ref_1284_RC	32	43	41	20	23	19	43	19	46	23
GCCGGGCCACTACCCT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GGGGACAATTCCGGTC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTTAGCTCACAA	ref_1284_RC	35	37	50	39	42	29	47	34	42	22
AGTCCACTCGTATTGA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GAACCCTTAGCTTTTC	ref_1284_RC	14	29	13	20	30	7	19	15	18	15
TGTAGAACTTCTTACA	ref_1284_RC	25	34	33	20	24	17	27	26	24	17
GCTTCTAGGATCTTGC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
ATTTATCACTAAAACA	ref_1284_RC	80	90	96	82	114	82	114	67	108	52
TCCTGGGGCAACATCA	ref_1284_RC	6	20	14	12	22	11	18	10	21	12
GGTGCGGCAAGGCGAA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GGTCATTCATGTCAAG	ref_1284_RC	22	29	37	33	55	20	44	32	43	22
CTGTTAACTGGATACG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CCATATTTTCTAACTT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
ACACTGTCATAGATTA	ref_1284_RC	24	12	34	27	20	22	31	25	23	27
TTTGACTCTCATCTGC	ref_1284_RC	9	19	13	11	13	7	17	13	24	14
TATTGTTTTTTTATTG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
AAACGCTGCGGACGCC	ref_1284_RC	15	18	23	17	18	15	20	14	10	24
GTATCGGATGACAGCT	ref_1284_RC	8	12	7	7	12	9	14	8	5	5
GCACTTCCGATTCACC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TAGCCAGTAGGGAAGA	ref_1284_RC	22	55	29	25	44	29	48	28	53	24
CCTATCTGGGTTCAGC	ref_1284_RC	5	14	6	5	13	4	4	6	13	9
ACGGTTAGTCTTAAGG	ref_1284_RC	5	6	6	5	7	3	9	11	12	6
AGGCTAGTTTTGCCTT	ref_1284_RC	8	11	16	5	14	1	8	8	8	7
GCCAGTATACTTCAAT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TGGAGGGTTCGGCTAC	ref_1284_RC	37	51	39	44	68	41	66	49	54	33
GAATGTTATGCGAATG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTACCCTAGTGC	ref_1284_RC	20	27	29	23	45	25	44	19	45	23
AACTGCATAGCCGGCG	ref_1284_RC	63	87	86	48	79	64	85	52	83	53
CGTCGACTTTAAAGTC	ref_1284_RC	98	106	84	82	122	62	107	90	103	66
CCAAGTTCAAGTCTAA	ref_1284_RC	24	26	35	11	29	24	28	15	38	15
CCAGTCGGTCCCGGAA	ref_1284_RC	1	8	5	3	2	5	1	5	6	0
CTGCCTGCCTTTGTGT	ref_1284_RC	3	1	6	0	5	1	4	1	7	6
GTGGCTGGGTAAGTTC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TCCGGGTCGTGCCTAG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GGATGTGTACGGAGGC	ref_1284_RC	85	119	130	82	135	91	115	89	134	63
GTGCTAGATGCCCGGT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GTATCGAAGATCTATA	ref_1284_RC	10	15	11	8	7	2	9	10	18	5
CACATGATTCCTCTGA	ref_1284_RC	23	23	28	21	45	13	25	18	33	14
CCAACTATACTTAGCG	ref_1284_RC	3	5	1	1	4	2	3	4	5	1
CTTCGTGGGGCAGAGT	ref_1284_RC	34	45	31	16	35	30	37	17	44	15
TCCGATTGGCTTGCCT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CATCGTTATAGGCGAA	ref_1284_RC	23	32	36	40	44	33	54	35	39	33
GACAGTATGGAGGTTC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
GAGGTCCTTGCCACTC	ref_1284_RC	0	8	5	2	4	3	7	3	5	7
ACAGGCACCACCTCGA	ref_1284_RC	30	32	37	35	48	32	33	27	47	41
CCGCGATTTCATCTAG	ref_1284_RC	86	138	85	88	150	61	152	77	141	64
GACTTCGTTTCTTTTT	ref_1284_RC	35	29	32	26	31	28	28	28	36	25
TACGTTACAAAGTCTT	ref_1284_RC	33	56	39	42	41	45	40	30	57	29
GTACCAGGTGAATATG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CTCCTCTTGCTCGGAA	ref_1284_RC	46	74	75	57	68	55	74	35	63	56
GTATTGATTGAGGCAA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
ACGTCGACTAACAGGC	ref_1284_RC	46	93	93	52	71	60	67	60	104	51
TTGTTTACCAATATCT	ref_1284_RC	49	47	69	51	47	56	86	67	63	40
AAGACTTTTCGAGCTC	ref_1284_RC	3	7	4	3	4	3	6	1	4	1
TCATGCAAGTTGGCTT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TTACCACCTAGAGACC	ref_1284_RC	35	40	40	48	46	49	58	35	51	32
CAATCTGGCGGTTGGC	ref_1284_RC	2	6	12	4	9	6	9	6	9	7
AGTGGTTATTCAAGTT	ref_1284_RC	12	21	16	9	20	12	27	12	29	15
AAGAGCGGAAGACGGC	ref_1284_RC	1	9	2	0	4	1	5	3	3	3
TGCAGATCCTGGTAGG	ref_1284_RC	9	10	10	6	10	3	10	16	10	8
GCGAGCTTGTTGTGCA	ref_1284_RC	20	34	35	14	38	33	39	22	45	34
GTGATGCGCTGGAACT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CTGTTCCCGTGCACTT	ref_1284_RC	13	11	11	18	17	10	17	12	16	11
CCTAGTTTATATCGTT	ref_1284_RC	3	11	13	4	10	5	12	9	9	7
AATCTTGGCAAAACGT	ref_1284_RC	5	7	3	0	7	5	15	4	9	8
ATGCGGGATTCCCCGC	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
AACTGACAGTCTTATT	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
AACGTACCTTGGGCGA	ref_1284_RC	2	4	2	2	6	2	6	4	8	3
CATCGGTCTTCCGCAA	ref_1284_RC	26	21	21	24	36	23	30	23	31	22
GGTTACTCTGCCTGGG	ref_1284_RC	17	29	18	11	30	20	39	14	26	14
TGCGACCTTAGTTAGC	ref_1284_RC	36	45	39	27	48	26	39	23	41	32
TTGAGGAGAGTATTAA	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
TCTGGTTGTCGCTCTG	ref_1284_RC	22	36	27	34	35	28	36	30	26	21
GAGCACAGAGGTAAGT	ref_1284_RC	10	11	9	6	10	9	11	7	11	7
CTAGTCACTTCGCAAG	ref_1284_RC	19	60	43	28	53	23	55	31	68	19
ATTCTTTAGTTTATCA	ref_1284_RC	10	15	15	3	7	6	13	10	6	3
CCTCATGTCCGGGCTG	ref_1284_RC	9	6	16	9	11	9	11	15	10	4
CTCGCTATCTTAGCGG	ref_1284_RC	104	194	133	119	219	98	202	107	194	99
AGTTCATTGGTTGAAG	ref_1284_RC	0	0	0	0	0	0	0	0	0	0
CATGGGTACAAGCGTC	alt_5642_new	11	27	16	14	35	16	22	12	31	10
GTCAGCGCATGGCTAC	alt_5642_new	0	0	0	0	0	0	0	0	0	0
TTTCGTGTGAATTTCG	alt_5642_new	11	31	22	19	37	22	40	12	51	16
TTTGCCTCGGTATAAC	alt_5642_new	12	12	6	5	13	7	10	8	10	2
TCCCAAACGGCCGACC	alt_5642_new	5	54	12	5	37	5	39	4	56	7
CGGGTTATGGATAGGT	alt_5642_new	3	0	2	0	7	6	12	4	8	3
TTTCAGAGGGTATAAG	alt_5642_new	2	5	2	1	4	1	12	0	4	2
AAATCCATTCCTTCCA	alt_5642_new	1	0	1	1	6	0	2	0	0	2
GTGATGTTTTCGGTAA	alt_5642_new	14	37	12	13	45	18	35	12	41	9
GTACCTACTGTTATGA	alt_5642_new	12	21	13	5	19	3	26	4	23	8
GGACCGCTATGGTAAT	alt_5642_new	15	54	18	18	46	24	53	20	61	22
GCAATTTCCGATTCTC	alt_5642_new	16	20	16	26	19	18	24	7	26	11
AGTCAGTGCTCATATG	alt_5642_new	18	77	33	27	79	10	67	16	77	29
CCGTTCGAAGCTCATA	alt_5642_new	3	100	6	5	92	10	100	4	95	6
GATTTCATAGTGGCCG	alt_5642_new	24	44	28	25	60	24	42	22	49	16
TACTTAAGCCTCCGTT	alt_5642_new	10	23	11	4	21	17	26	10	29	6
TTGCGCAGGTAGATGT	alt_5642_new	14	42	16	10	39	20	40	21	47	20
TGGTCGAATCCACGTA	alt_5642_new	0	0	0	0	0	0	0	0	0	0
ACCCGTTCCCATCGCT	alt_5642_new	5	20	5	3	19	3	16	4	22	4
TGTAGCGCAAATCGCA	alt_5642_new	27	55	34	33	66	21	76	28	84	23
AGGTAAATTCTTAATA	alt_5642_new	31	60	22	26	56	22	73	20	57	15
ACCTGCTACTTTCCCG	alt_5642_new	25	73	27	24	60	24	90	19	76	15
TGGGTTCGACGGCAAG	alt_5642_new	40	118	54	39	143	46	115	38	137	40
CACGGATTAGGTTCCC	alt_5642_new	2	4	2	5	1	2	3	3	6	2
TAGCTTATGTTCCGGT	alt_5642_new	9	17	5	5	18	12	29	11	22	7
CTGCAGCGGAACGAGC	alt_5642_new	5	14	3	1	16	4	14	5	29	3
AATGCTGTGTGTGGGA	alt_5642_new	0	0	0	0	0	0	0	0	0	0
GCGGCCCTTCGTTTCA	alt_5642_new	11	20	4	7	23	8	17	8	20	5
CAAGTCTCCCCTTCCT	alt_5642_new	0	0	0	0	0	0	0	0	0	0
GGGGGGTTCCCATCAG	alt_5642_new	3	8	6	1	15	4	12	4	19	2
AAGCGTGCTTGTCAGA	alt_5642_new	0	0	0	1	2	0	1	0	0	0
GATTCCTTTAATCTAG	alt_5642_new	0	0	0	0	0	0	0	0	0	0
AGCATGATAGTACTTC	alt_5642_new	5	11	5	2	10	6	6	1	3	8
ATAAGATGGTACCATC	alt_5642_new	0	0	0	0	0	0	0	0	0	0
GGTCTTGGTCATGCAT	alt_5642_new	5	1	7	6	6	9	5	1	1	4
TGCTGAATGTTTGGAC	alt_5642_new	129	317	172	120	291	143	344	131	358	121
TAGCTAGAACTGGGTT	alt_5642_new	0	8	1	3	0	1	4	1	7	3
CTGGTTACCGTTTTTG	alt_5642_new	18	34	12	7	19	13	26	13	31	14
CTGGCACAGGGAACCG	alt_5642_new	16	20	12	5	27	11	32	5	32	11
GCAGCGCCTTGTCAGG	alt_5642_new	6	15	6	1	21	4	18	3	15	7
TTATGTTTACGAATGA	alt_5642_new	11	41	20	13	25	15	41	11	36	14
ACCGGCGAACTCTTCG	alt_5642_new	12	21	7	8	27	9	23	12	29	8
CTAGGTGTTTTTTAAT	alt_5642_new	11	43	16	23	49	20	44	21	44	14
GAAGGTTGGGCCATCA	alt_5642_new	22	58	35	17	49	16	58	16	61	12
TACTTTGAACAGTGTC	alt_5642_new	1	7	0	3	13	1	7	2	8	0
CGGCTGGCACGGATAT	alt_5642_new	14	24	11	10	37	10	32	11	41	12
GTGGGGCAGGCTGTTC	alt_5642_new	0	0	0	0	0	0	0	0	0	0
CAATACCGAGCCTGAG	alt_5642_new	21	31	35	24	18	21	24	21	29	24
CAAACGGGAGAGGATT	alt_5642_new	21	32	16	14	40	20	50	15	32	16
TAGAGATATGATTTCT	alt_5642_new	0	0	1	0	0	0	0	0	1	0
GAGTCACCCGCTCACT	alt_5642_new	7	11	13	3	6	3	15	5	14	4
CTCGGTGGTAGACGAT	alt_5642_new	0	0	0	0	0	0	0	0	0	0
TTTCTAATTCTCCCTC	alt_5642_new	27	55	20	27	81	17	73	18	58	30
GCTAGGTTACCCTCAG	alt_5642_new	4	18	6	13	16	10	11	10	37	4
GGGATTTGCGTAATAG	alt_5642_new	12	18	19	15	35	23	38	11	26	5
AGTTCGTTCGCCCGAG	alt_5642_new	0	0	0	0	0	0	0	0	0	0
AACCCGCTTGCACTAT	alt_5642_new	9	30	10	10	42	8	31	11	33	12
GCTAATGGGACTCAGT	alt_5642_new	2	6	1	1	3	1	4	4	0	4
TAATTTCCTCTACGAT	alt_5642_new	16	27	15	11	37	9	26	11	30	12
ACGTTCCAATTTGTGA	alt_5642_new	0	0	0	0	0	0	0	0	0	0
AATATCCACAAGCCTA	alt_5642_new	0	0	0	0	0	0	0	0	0	0
GGGTGTTTTCTCCTGG	alt_5642_new	17	53	22	18	51	14	40	12	32	15
GATCTTCCCGATTTAG	alt_5642_new	2	4	3	3	6	2	2	3	3	2
ATGCTTCGTTTTAACG	alt_5642_new	2	9	3	3	13	1	8	6	13	5
TGCTGACTCAGCGTGG	alt_5642_new	27	62	36	32	39	27	75	23	70	36
TAGATAAGCATATCTG	alt_5642_new	3	7	3	7	9	2	7	5	7	8
AGCGGGGGGTATCGCG	alt_5642_new	4	10	3	2	7	8	8	5	6	3
AATATCCGCCTTTAGT	alt_5642_new	1	8	2	6	10	2	6	3	4	2
GCATACCGTATCTCGG	alt_5642_new	0	0	0	0	0	0	0	0	0	0
GTTGAATTCTGATCCG	alt_5642_new	0	0	0	0	0	0	0	0	0	0
CACGCATTGTCGAGGT	alt_5642_new	0	0	0	0	0	0	0	0	0	0
TCCTATTTATCTATTG	alt_5642_new	0	0	0	0	0	0	0	0	0	0
TACTGGTTAGGCAATC	alt_5642_new	32	70	37	27	82	31	82	26	97	31
GCTAGTATCCAGTTTT	alt_5642_new	0	0	0	0	0	0	0	0	0	0
AGACTGTTACATGTTC	alt_5642_new	7	13	6	4	15	6	8	3	19	3
GGGTCCGGCTTATATG	alt_5642_new	4	17	7	10	10	1	23	5	14	4
TTCCAGTATCACCTTA	alt_5642_new	0	0	0	0	0	0	0	0	0	0
TACTCTTCCCAAAGGG	alt_5642_new	0	0	0	0	0	0	0	0	0	0
CCTCGCTCTGCGAGAG	alt_5642_new	7	35	12	6	31	12	40	10	34	8
TGCGTTAGGTGTCGCG	alt_5642_new	5	6	5	4	10	2	11	3	9	4
AAGCGCGCTGTGACCC	alt_5642_new	3	11	5	10	15	7	16	3	16	8
TTCCCGTTCGCAAATT	alt_5642_new	0	0	0	0	0	0	0	0	0	0
GGGTGGCAAGATATTC	alt_5642_new	8	16	4	4	17	5	18	5	16	7
TGAAGATAGTCATGAT	alt_5642_new	16	31	15	14	32	10	34	7	29	15
GAATTTCATTTGGATT	alt_5642_new	11	21	17	12	13	10	15	11	22	12
CCTAAGGTTTTTGTCC	alt_5642_new	7	23	9	11	23	9	24	12	19	4
CCGGCGTTGGGCATTG	alt_6052_new	12	15	28	11	23	15	37	16	26	13
AGCTTTTGTTGGTTGA	alt_6052_new	0	0	0	0	0	0	0	0	0	0
GTACCAGTGATGATTA	alt_6052_new	26	22	23	10	19	21	24	12	24	13
ACAGATCTACATTAAG	alt_6052_new	19	24	27	18	44	22	34	36	38	10
TAGCCAGAGTGATGAG	alt_6052_new	8	24	16	11	12	10	19	12	13	11
TTCCAGGTGCCTCCGT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
GAAGATCATGCGAAAC	alt_6052_new	48	59	71	66	49	48	67	47	76	48
GAGCTTTATTTTCACT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TGCGCTTTTAAACGGT	alt_6052_new	46	48	41	40	49	28	49	27	46	24
CACGTCGGGATTTGCT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
AACTGTTTATCATCAT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TTAAGACAGAAGCGCA	alt_6052_new	0	0	0	0	0	0	0	0	0	0
AAAGCTGTCCAACGAG	alt_6052_new	50	70	63	65	76	48	78	51	100	59
GGCTTGCTCCTGTCCG	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TGCGCCACTGTTGCTC	alt_6052_new	11	14	22	24	37	22	29	17	23	12
GTCGCATGGTCCGAAG	alt_6052_new	4	2	1	5	5	6	7	2	6	3
ATACCTTTTCTTCGTC	alt_6052_new	1	12	2	1	16	4	19	5	11	1
CAGCCCTTAGCCCGAT	alt_6052_new	83	188	122	143	187	105	213	126	169	99
TAAGACACGAAGGTTC	alt_6052_new	68	80	92	56	71	52	81	70	70	49
GCCAACACATTGGCTT	alt_6052_new	10	28	21	15	25	10	37	10	30	7
TAACGCCTCTCTTGCA	alt_6052_new	53	90	94	75	76	55	88	52	91	57
GTTCCGTCCTAAACGG	alt_6052_new	0	0	0	0	0	0	0	0	0	0
ACATGATACAACAGAT	alt_6052_new	10	12	8	6	13	5	10	10	17	6
GTAGTTCTGTAGAACG	alt_6052_new	80	110	110	72	95	67	131	78	95	75
TGAAGGCTGGGCCGCT	alt_6052_new	17	12	20	19	12	31	20	18	19	14
ATGCTCCTTGTTTTGA	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TTTATAGTCTGCTATG	alt_6052_new	17	26	28	24	16	20	29	15	19	16
GACTTTCTACCTCTGT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TTTGTATCGCTCCACT	alt_6052_new	18	5	22	27	6	22	2	14	7	17
CCACCCTCCGACTGCT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TTTTCAAGCATAATCA	alt_6052_new	11	18	13	13	9	7	16	12	14	8
CGTTCGCACCTAGACT	alt_6052_new	14	14	10	4	17	12	9	12	12	11
ATGCCCCTCTGTCGAT	alt_6052_new	24	34	31	26	25	22	31	26	36	26
AGCGTCCTATGCCTAT	alt_6052_new	21	40	16	17	24	17	30	11	35	15
TCGCGTGTCCTTATAC	alt_6052_new	22	25	22	21	26	27	38	21	41	25
TCGGGTTAGAACGCGC	alt_6052_new	0	0	0	0	0	0	0	0	0	0
ACGATTGTTTGTACAT	alt_6052_new	24	47	35	36	40	21	51	24	42	32
ACACTCAACGTCACCC	alt_6052_new	12	17	15	16	16	4	23	11	24	17
AGTCCGTCGGCAGGAA	alt_6052_new	29	27	30	19	28	30	34	18	34	24
CCAGTCTATTTAATTG	alt_6052_new	0	0	0	0	0	0	0	0	0	0
ACGTAGGTTCGGGTTC	alt_6052_new	12	8	7	6	6	7	9	4	10	4
GCTTAACTAGTATCGA	alt_6052_new	13	7	21	10	12	3	8	2	17	8
ATGTCCTGGTGAACGT	alt_6052_new	47	74	71	59	67	45	90	49	71	44
GCATCCGATCTCACTG	alt_6052_new	16	21	13	20	16	10	24	11	26	18
CCGTGTTACTGCCACG	alt_6052_new	46	77	75	63	56	44	54	46	77	41
AGTGTGCTTTAACCTT	alt_6052_new	9	16	7	12	19	5	18	12	26	12
TTAAGGACCGTTGGTG	alt_6052_new	26	49	35	42	31	28	44	24	55	35
TCCCAAGAACTTGCAT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TCGTCATTTGCCACAG	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TATCACGGAGGTGAAT	alt_6052_new	35	55	53	59	41	41	51	36	47	37
ACTCCGGTCTTCTCTT	alt_6052_new	10	6	15	4	12	3	12	8	8	9
CTTAAGAATCCATTAT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
GTTAAGCTCCAAACTG	alt_6052_new	4	10	2	4	2	5	2	1	3	2
AAGAAGGATTGGGATA	alt_6052_new	8	14	18	11	11	6	10	19	17	4
ACCGGGAAACATCCTT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
AACGTTCAACTTAAGG	alt_6052_new	0	0	0	0	0	0	0	0	0	0
CACACGCGCTTAAACC	alt_6052_new	12	19	13	16	21	9	23	13	13	15
GATTGCTTATCTACTA	alt_6052_new	15	27	50	32	37	38	37	24	29	23
CGCTTGGGGCCCTCCT	alt_6052_new	20	39	33	27	31	28	26	24	46	23
CGTGTTAATTGTTGGG	alt_6052_new	14	10	13	8	11	13	28	11	22	13
GAGAGAAATTTCCGCT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TTCTAGATGCTTCTGG	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TGAACAATGGAGACGG	alt_6052_new	67	38	71	61	51	45	66	62	61	75
TTTATTCGGGTTGTTT	alt_6052_new	16	17	17	9	10	20	17	17	18	18
CGCGATTTTTGTCGTT	alt_6052_new	45	52	65	76	69	52	58	66	71	62
TGTCTTGGTTCGGCCG	alt_6052_new	8	4	4	8	4	4	6	3	11	3
TTTATATGTGAGTAAA	alt_6052_new	21	24	19	21	28	18	28	19	30	18
TATCTTTACGTATAAT	alt_6052_new	10	6	14	9	14	11	6	10	12	14
TCCATGCCATGGCTGA	alt_6052_new	30	25	32	26	38	38	42	24	35	22
CGGATAAGCTACCCTA	alt_6052_new	1	0	1	1	0	0	1	1	2	3
ACCTAGACCCTGGGGA	alt_6052_new	13	14	26	11	24	12	22	12	14	11
TTTCAGTGGAAGCTTA	alt_6052_new	0	0	0	0	0	0	0	0	0	0
GATTGTATCGCCTCAA	alt_6052_new	23	40	37	34	33	18	37	17	36	22
TGGCCAAAACGACAAA	alt_6052_new	11	15	14	8	26	9	8	8	18	10
TTTCGTCTTTCTGGGA	alt_6052_new	15	15	7	19	21	13	18	7	20	9
GGATATGAGGCGATCC	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TAGGGGGTTTTATAAA	alt_6052_new	150	161	179	150	145	123	157	131	178	110
ACCTTAGGAAATAATT	alt_6052_new	14	20	9	7	9	9	15	5	22	10
CCGAAGCTCTACAATC	alt_6052_new	15	16	20	22	17	18	13	8	32	8
TCCATGGCTAGGGAGG	alt_6052_new	9	12	14	8	12	5	10	12	10	11
GCATAGGTGATCGTAT	alt_6052_new	0	0	0	0	0	0	0	0	0	0
TTGTTGCTTTTTCAAA	alt_6052_new	6	6	9	18	5	16	8	11	13	2
GTTCATTAAGTAAACA	alt_6052_new	115	127	142	113	101	93	119	102	135	87
TTCGCCAATTTAGTGC	alt_6052_new	21	15	19	14	30	12	16	16	16	15
TATCCGTGCGCGATAC	alt_6052_new	40	25	28	37	38	27	37	27	42	23
TCCACGCAGGCACATA	alt_6052_new	31	24	28	28	27	26	37	22	23	20
GTCGCCTAGTTATGGG	ref_6001_new	15	13	18	13	15	15	11	15	8	12
AAATCCCTTCTCTTCA	ref_6001_new	119	95	140	137	93	125	88	113	95	103
GCGCGCAATTAGGTGA	ref_6001_new	112	92	145	148	79	112	74	127	113	117
TAGAGGGCTGCAGCTG	ref_6001_new	41	42	58	45	30	40	39	33	32	34
TATCCTCTATCGTCGA	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TAATGCACGTGTATTA	ref_6001_new	13	2	12	5	9	4	16	5	6	3
CTTTTGTCACCGCCAT	ref_6001_new	59	39	59	56	43	47	38	45	41	46
TTATAATACACGTGAG	ref_6001_new	11	12	16	17	12	15	10	9	11	10
GTGCCCCGAACATAGC	ref_6001_new	7	8	14	6	2	7	6	5	10	4
TCGAGGTGGCATGTCG	ref_6001_new	21	20	23	21	27	24	15	31	31	23
CGATTTTCGAACCTAT	ref_6001_new	0	0	0	0	0	0	0	0	0	0
CTTCAAGTTGCCGCCT	ref_6001_new	15	18	29	20	12	19	14	18	10	24
GGTACCTCACAGATAG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
CCCCCCTGAGCACTGT	ref_6001_new	0	0	0	0	0	0	0	0	0	0
GTCAGGCGCCATGCAT	ref_6001_new	8	7	4	4	2	5	1	6	4	4
TCTGCTCGCGCTTGAA	ref_6001_new	0	0	0	0	0	0	0	0	0	0
CTGTAAGAACGTGCGA	ref_6001_new	186	164	197	209	189	195	151	168	196	169
TGGTCTCTATCACATG	ref_6001_new	2	0	4	6	1	3	1	4	7	1
TACGCATTTCTCAATC	ref_6001_new	18	15	22	24	12	22	18	18	21	21
CGCAGATGGACACCGA	ref_6001_new	37	49	70	42	40	43	44	42	61	43
TTCGCTACTCCGCCGC	ref_6001_new	82	52	107	97	70	98	68	77	63	76
AATGCGATAGTTCCCG	ref_6001_new	27	27	43	32	26	34	33	38	27	18
GGTCCGATGGGTCAGG	ref_6001_new	14	10	17	8	10	25	11	7	6	17
GAAGGTTTGGGAGTAT	ref_6001_new	96	87	128	103	86	92	79	114	77	81
ACGCCGGTCCACGATG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
ATGGTTCTATACCCCA	ref_6001_new	42	43	56	38	43	37	43	34	35	35
TCGGGGCTGGGAAACG	ref_6001_new	34	23	40	27	30	37	19	20	16	22
ATGTAACGCCGCCATC	ref_6001_new	0	0	0	0	0	0	0	0	0	0
CACTCTGCATTGGCCT	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TTCACTTCGATCGTGG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
CCCGTTGTCGAAATAA	ref_6001_new	14	13	19	14	7	9	8	13	10	12
CGTAAGTTTAGGCAGA	ref_6001_new	61	51	56	69	42	56	54	69	46	52
ATAGTAGATTGCCCCT	ref_6001_new	27	22	39	31	24	41	30	43	23	34
TTATATGGCTGGTCCC	ref_6001_new	12	14	20	16	13	21	19	26	20	11
AGAAGGCCTGTCTTTG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
GTCGATCCGGTTCCCC	ref_6001_new	22	22	31	26	33	18	24	16	25	24
CATCCCAAGGCAGTCG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TTACTAATGGAAGTCT	ref_6001_new	66	48	76	78	63	63	50	75	40	49
CGTTTTGGATTTTATC	ref_6001_new	0	0	0	0	0	0	0	0	0	0
GGTTATTCGAGCCGCT	ref_6001_new	551	471	633	503	435	508	460	488	461	454
TTACTACGTTGTAATT	ref_6001_new	34	41	27	31	22	31	31	37	23	30
CTGTGCGTCGACCTAC	ref_6001_new	0	0	0	0	0	0	0	0	0	0
AGTAAATCCTGGGTAT	ref_6001_new	0	0	0	0	0	0	0	0	0	0
GAAATGTCGGTTGGCA	ref_6001_new	73	45	74	71	38	63	44	61	47	59
CGAACAGATTCCTTAT	ref_6001_new	10	7	23	18	16	17	26	25	18	18
GACTGAATTGTTCAGG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TTTTATCTATCCAATT	ref_6001_new	34	38	38	39	30	34	37	39	35	22
GTCGCGAAAGCAAGAG	ref_6001_new	48	50	60	47	47	48	48	50	29	44
TAGTAGTATGAAGACC	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TCCGTAGCAGGAAAGG	ref_6001_new	45	26	55	54	26	56	31	39	40	33
GTTGGCCTTACTCGTG	ref_6001_new	57	34	77	56	50	69	54	65	67	68
TGTCGGGGTTCAGGCG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
GCATTTTCCGCCTAGG	ref_6001_new	11	16	33	18	8	16	14	13	16	17
AGGCGAGAGTCCTGAT	ref_6001_new	30	7	20	22	11	23	13	16	11	14
GGGCGCCGTTTAGCCT	ref_6001_new	54	39	65	58	34	46	35	53	39	61
TTTCTATTGAGAAAGG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
ATAGTTGGAGTAACGG	ref_6001_new	95	73	91	89	78	96	65	78	63	67
AATCGAGACCGTGAAT	ref_6001_new	9	10	5	7	2	8	6	7	5	4
GACCGGAGCAAAGTCT	ref_6001_new	6	6	3	8	4	5	6	4	5	4
GGCGTCCAACACCATC	ref_6001_new	0	0	0	0	0	0	0	0	0	0
AGCCGGCTCCCGCAAA	ref_6001_new	0	3	1	2	2	2	1	1	1	1
TTTCCACTAAATTAGT	ref_6001_new	0	0	0	0	0	0	0	0	0	0
CGATTCACAGGCGACG	ref_6001_new	23	13	26	29	26	20	18	26	19	25
TCTACCTCTGCACAGA	ref_6001_new	81	65	85	64	60	67	66	65	73	49
GCCCGGTTGCTTTCGA	ref_6001_new	239	177	246	216	186	203	188	219	173	179
CGTCCCGTCTTCACTC	ref_6001_new	0	0	0	0	0	0	0	0	0	0
GTATACGGTGTCCTCG	ref_6001_new	50	41	82	62	48	52	37	62	39	55
AATGCTTCACTCGTTG	ref_6001_new	39	34	63	55	34	46	34	45	37	54
TATGCTACGGCCTTGC	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TGATACCGCTGGATCT	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TCGGTCAAACAGTTTT	ref_6001_new	49	143	48	33	174	28	184	39	162	32
CACAGATGCATCTGTT	ref_6001_new	0	0	0	0	0	0	0	0	0	0
AAATTTGCCGTTGCGC	ref_6001_new	23	28	35	26	21	31	35	18	45	27
CGGAGTCGCTCGCCTT	ref_6001_new	26	14	32	29	22	28	23	29	38	23
GCCAGGCATCTCCTTT	ref_6001_new	11	19	19	14	17	10	16	18	17	10
AGGCCTTGCTGTCTTG	ref_6001_new	43	44	59	60	47	54	41	46	36	49
GGCTCGCGCAGAGAGA	ref_6001_new	63	59	81	51	60	63	41	48	48	44
CGCGAGCCGTTAATAG	ref_6001_new	22	20	26	21	25	18	16	21	14	20
AACTCGATAGGACGGG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
ACAGTATAAGTAAAAT	ref_6001_new	37	36	55	59	44	41	42	39	40	36
AACTGAGGTGGGTTAA	ref_6001_new	4	7	2	5	10	7	4	1	3	6
AGCTTTTATCGGTGCC	ref_6001_new	54	38	75	62	34	60	41	59	45	61
TGTCCGAAGTTCAGCC	ref_6001_new	19	18	22	12	17	11	10	21	13	11
CTATGCCCACCCCCTT	ref_6001_new	0	2	1	2	0	1	3	1	4	0
GCGCTCTAAGCGTTCG	ref_6001_new	0	0	0	0	0	0	0	0	0	0
GCCTTCATGACCGGCC	ref_6001_new	36	32	64	43	26	40	38	42	23	26
GCAGTTTACCTTAGAA	ref_6001_new	0	0	0	0	0	0	0	0	0	0
CGGCGTACGACCTAGT	ref_6001_new	2	1	4	6	3	2	4	3	3	3
TGTCTGTTCTCGTAGA	ref_6001_new	115	88	155	127	111	114	94	120	106	127
TTACCATACCTGTTGA	ref_6001_new	19	19	13	13	19	15	35	13	15	11
GATCAATTCAGATCTG	ref_6001_new	41	39	55	38	37	53	40	35	33	46
TTACGTCGGTTTCAAA	ref_6001_new	0	0	0	0	0	0	0	0	0	0
TCCAGTACAGCCCGTT	ref_6001_new	15	15	21	21	16	14	20	21	18	18
CAGAGACGGCATACTT	ref_6001_new	74	49	84	67	50	50	59	63	30	68
GCGTCGACGTTTTGCA	ref_6001_new	41	33	40	40	41	38	32	33	31	25
TTCTTGCCCACTCGTG	alt_5766_new	11	10	9	13	17	15	11	9	10	8
TATATTCCTGCGGGCT	alt_5766_new	39	43	71	55	48	47	58	71	50	48
ATCTTGGCCACTGAAG	alt_5766_new	21	19	18	19	25	17	28	26	17	21
ACACTACTGGCTAATT	alt_5766_new	4	6	3	4	5	2	7	5	3	4
CTAGACTCGCTTTTTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
CAGTTTAGTAGGCCAC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
CTCCGGTGATTGGCTT	alt_5766_new	77	75	108	98	61	65	60	69	65	65
TTTGATAAGTTCTATA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TGGGGTAACGCTAATA	alt_5766_new	33	37	44	34	41	37	38	35	37	32
GCAGAACTTCCCTACC	alt_5766_new	6	4	10	6	6	10	7	5	9	6
GTGAACAGCAATTACT	alt_5766_new	54	32	56	39	42	41	33	23	35	34
CTTGGGACTTAGATGC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TTCGCTTAATGCTCTA	alt_5766_new	50	53	64	55	56	59	52	58	51	55
AGACTTTGCACTGGGT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
CGCTTTACCTATAAAC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GCGTAGAGTTTAGACG	alt_5766_new	14	4	14	16	8	13	12	6	16	9
CTTTCCTTGCGCAGCA	alt_5766_new	6	5	12	5	1	8	8	5	7	9
TTGGCCTGTGGTATAC	alt_5766_new	20	19	20	10	11	11	27	12	26	13
AACTGTCCCTCATTCA	alt_5766_new	8	17	24	16	4	16	9	13	4	11
AGTCCTTTTACTTGGG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GTAGTGAGGTCATCTG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
AGATTCGTAATACAAG	alt_5766_new	84	81	83	51	64	64	68	52	55	51
AAGCAGTTATTGTAGT	alt_5766_new	36	35	49	45	34	47	42	36	50	22
TCGATATGTTTATTTG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
AGATCACGATTGTGTG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GGAATCTGAGTCTGAT	alt_5766_new	0	0	0	1	0	0	0	0	0	0
GCTTCGACTATGATAA	alt_5766_new	60	45	75	65	72	58	63	74	69	49
TTGGTCTCGTACGGTT	alt_5766_new	9	7	6	14	5	8	8	8	8	8
CACGTGGGTACTTTAG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
CGAGGAAATGCGTGTA	alt_5766_new	18	24	24	25	27	18	15	13	26	14
CTGCGATGTGTCCCCG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GCGTCTCGAATACATC	alt_5766_new	7	13	22	12	15	8	14	14	23	16
AATCGTCTGAGTGATT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TTATCTGTGAACATGG	alt_5766_new	14	5	8	10	8	10	5	5	5	13
CTTGACTTAGGTCCCC	alt_5766_new	1	2	4	2	3	0	4	11	1	1
CAGTTCAGTCTGCACA	alt_5766_new	1	9	6	4	7	5	10	3	8	3
ATTCCACCATATTTGT	alt_5766_new	88	99	121	116	98	106	82	98	107	78
CAACCTTTCGCACATA	alt_5766_new	30	39	43	32	31	25	37	31	31	22
AACTGAGCGCGGGTTC	alt_5766_new	57	49	76	74	48	69	65	47	63	45
TGCTTTAGCATTTCTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GAGGCGATCGTATGGT	alt_5766_new	27	16	22	13	21	21	24	21	23	21
CCAGCCGACTCTTGCC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TTCTGCCACCTGGCTA	alt_5766_new	46	41	58	42	48	42	60	43	51	40
TGGCTATACCCCCAGT	alt_5766_new	41	37	48	37	35	59	40	36	33	22
GGGCACTCGTGGACAC	alt_5766_new	9	13	18	9	6	15	11	19	10	9
TCTATGTAGACTTTAT	alt_5766_new	18	15	21	11	13	14	28	20	23	17
GTTAATACGTACGAGT	alt_5766_new	51	43	60	60	62	68	54	34	55	45
GCTCCCCAGGCTGACT	alt_5766_new	15	58	24	19	68	14	58	13	62	22
CTAAGGTAACAGTTGC	alt_5766_new	17	20	30	16	16	19	18	14	23	13
CTGACTGCCGTTAATT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GGGGCGCATAATATTT	alt_5766_new	16	21	32	24	24	22	29	16	36	16
TTGGTTCGTCAAGCTC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
ACGCATACGACTCACC	alt_5766_new	6	13	12	3	19	6	15	3	9	5
GTGTGCGCACGCATTA	alt_5766_new	35	37	31	29	35	31	44	24	53	31
CTTTCGGTTAGATTTC	alt_5766_new	6	12	10	9	4	6	4	12	6	7
TCTAAGCATGACTGTC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GCAATGCCTGTTTTTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TACGTCTATTAATGTC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TAGGTTTTTGAGTATT	alt_5766_new	21	20	17	13	21	14	21	10	17	6
ACTACTTGGTAGGTTT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TACAGATTTGATTATT	alt_5766_new	241	202	318	211	224	184	241	226	250	210
GCAATACTCTGTTTCT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
AGTTTCGCGCCAAATT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GATTACTAGCTAGTTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TTGCTCATCAGTTCTC	alt_5766_new	47	36	45	36	40	34	44	36	35	32
GAATACTCTGATGTGC	alt_5766_new	98	87	103	92	93	80	84	79	81	70
CTGCAGACGTGAGCTT	alt_5766_new	23	24	48	40	28	32	28	31	32	21
TCAACCCTAAGACTTC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TTTGTTACTTAGTAGT	alt_5766_new	19	19	17	24	15	15	26	12	16	14
CCCCGACACTCCACTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
ACTTCTGACATCGTAT	alt_5766_new	3	9	4	2	2	4	7	11	4	7
TCCTGAGCGATAATGA	alt_5766_new	34	38	40	43	32	31	36	38	45	45
TGTTTTGGAACACGTT	alt_5766_new	8	9	8	6	10	5	7	11	8	2
CAGGGATGTTATTTGT	alt_5766_new	513	424	595	558	394	516	421	500	447	445
GTCAGCCAGCGTAAAT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
ATGTCGTTTAGGCACC	alt_5766_new	29	24	33	29	27	30	26	19	21	20
CTCTATTTCTGACTTT	alt_5766_new	56	23	38	51	42	45	36	42	33	40
TTCCATGTGACCGGTG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GAGCTGCTGTGGTGGA	alt_5766_new	15	7	5	12	8	14	8	9	15	6
GCAGACTCCAAGCGTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GCACTTGTAGCGGCGC	alt_5766_new	20	8	15	15	18	18	35	7	27	16
CTGCCCTTTGGTTTAT	alt_5766_new	131	91	175	125	95	100	94	104	116	96
GGTCTAGGCGGCTAGG	alt_5766_new	0	0	0	0	0	0	0	0	0	0
CGGTGATCCGTTGGCT	alt_5766_new	21	36	23	42	23	32	18	29	31	34
CCGTCCCCTTTCCACA	alt_5766_new	3	9	17	9	15	13	5	11	19	5
CGTGTAGCTCGTCATG	alt_5766_new	52	61	55	50	50	48	41	63	53	65
TACAGCAGTATGTCTG	alt_5766_new	47	46	66	57	58	63	50	44	51	51
TTATTATGCGCATCTA	alt_5766_new	14	16	12	12	7	12	21	10	17	12
CTTGTTTGGTGAATTG	alt_5766_new	5	4	10	6	8	5	9	4	3	5
GCCTTGGATTCTGCCT	alt_5766_new	9	17	14	15	13	14	20	15	20	7
GTTCGGTCATAGTCTC	alt_5766_new	0	0	0	0	0	0	0	0	0	0
CGTAGCTGTACTGGTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GACTCTGGTCACTATA	alt_5766_new	28	17	32	30	25	44	40	24	28	26
AGACGTATTCATACTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
TCCTCTACTTTATTCG	alt_5766_new	37	46	42	46	39	42	53	60	51	42
GCGACTCTTAAGTCTA	alt_5766_new	0	0	0	0	0	0	0	0	0	0
AAGCAAGACCAGCGCT	alt_5766_new	61	66	78	60	67	69	69	59	63	56
TGCCGAGTGAATGACT	alt_5766_new	0	0	0	0	0	0	0	0	0	0
GTGAGTATCCGTCTGG	alt_5766_new	7	2	5	6	9	10	7	3	14	6
TTTGGAGGCGAATTAA	alt_5766_new	18	19	34	33	27	31	36	24	26	26
CTGTCGTTGCTCTCTC	ref_2534_reverse	2	0	8	5	3	4	4	0	2	1
GAGTCCCATAAGTGTT	ref_2534_reverse	13	22	25	11	24	12	21	17	21	12
TTCAATCATATATACC	ref_2534_reverse	41	34	33	26	26	23	31	23	31	27
GATTTGAGAGAGGGAT	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
ATAATCATAGGCGTTC	ref_2534_reverse	5	4	4	6	4	2	3	4	1	6
GCGGAAGGATGTTGTG	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGGTACCAAGATC	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGCCCGAACGGAA	ref_2534_reverse	6	9	10	7	2	5	9	3	20	4
GCCTCGCAGTCGTCTG	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
GCCACCATGTAAACCT	ref_2534_reverse	34	30	25	29	38	22	29	20	26	13
TCCTCGGGCGTGCTGG	ref_2534_reverse	46	56	49	43	63	48	65	52	65	41
CGCCGTTCTCAATAAG	ref_2534_reverse	99	113	122	92	104	104	119	85	160	107
AGCTCTGCATTTGTTA	ref_2534_reverse	44	47	44	53	47	48	42	46	48	28
CTATCGAGGAAATCGT	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
TGAGACCTCGTCTGCG	ref_2534_reverse	3	2	6	2	1	6	6	2	1	9
CTATGTCATTATGGAA	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGTTCGGGTTAAC	ref_2534_reverse	63	80	53	50	59	38	75	42	76	42
CTGCACCTCCGCGGAT	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
CGAAAGGGAAGGCCTC	ref_2534_reverse	114	89	140	111	119	116	116	118	106	102
TGGGGACTACTACTCA	ref_2534_reverse	10	11	10	11	11	7	5	8	12	7
TCATGAGGGCGCTGTT	ref_2534_reverse	101	90	106	79	111	99	88	82	94	83
AGTACCTCATTTTCAC	ref_2534_reverse	6	8	6	4	8	7	9	3	15	10
ACTCAATCTAGCGTTC	ref_2534_reverse	80	86	115	99	123	85	118	90	109	91
GTTTTAACGAGTCGTC	ref_2534_reverse	305	296	348	302	335	263	309	310	356	249
AGTTCAGGGTGATTTA	ref_2534_reverse	22	10	15	17	12	11	15	9	14	22
TCATATTTCCTCGTTC	ref_2534_reverse	46	39	52	43	41	25	41	40	37	32
AAGTGTAGAAATCGTC	ref_2534_reverse	47	51	51	41	62	53	54	48	56	38
TTTACTCATTTTGGCT	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
GAACCAATTAATGATG	ref_2534_reverse	52	52	50	38	44	40	61	40	46	37
GGTGGGGCCTGGTGGA	ref_2534_reverse	4	15	18	13	6	12	12	12	12	9
CGCCTGGTGTTTTAAT	ref_2534_reverse	73	138	123	106	126	77	96	92	119	86
CGCGGAAACTTGGCGC	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
ATTAAAAATTGCGGAC	ref_2534_reverse	10	10	15	33	12	14	15	7	14	12
TTTAGAAGAAGGTCTG	ref_2534_reverse	32	28	46	32	38	40	41	26	49	26
CTCATTTGATGATAAG	ref_2534_reverse	2	8	6	7	6	5	10	6	9	3
GACTTCCTTTACCTAT	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTTAACCTTACCA	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
CACATATAACTGATCC	ref_2534_reverse	9	10	11	10	14	11	8	10	12	7
TCATCTATATATTATA	ref_2534_reverse	81	114	91	73	90	60	79	69	91	53
TGTAATCCACTATTCT	ref_2534_reverse	76	97	102	87	102	95	78	82	113	70
CTCCAGTTGGGATAGG	ref_2534_reverse	50	63	42	63	39	43	55	44	67	40
GTCTGTCTGTTTGCTA	ref_2534_reverse	10	5	1	9	4	3	3	4	5	3
TAGTCACGTAGACTGT	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGCTGTGTGTTTT	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
AAACACAAGACTTTTT	ref_2534_reverse	104	105	122	123	125	116	143	120	106	89
GCTAACCATCGCCCGT	ref_2534_reverse	19	56	27	22	40	29	52	25	40	18
CGCGGCTTCTACTCTC	ref_2534_reverse	30	7	12	12	12	15	14	13	9	13
TACCGGCCCACCCGGC	ref_2534_reverse	43	42	50	40	52	32	47	25	53	41
AGGTAATCATATCTAA	ref_2534_reverse	48	42	67	42	34	49	61	50	44	43
TCTTGGTACATGTTAA	ref_2534_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTTTCATAGTGCC	ref_2534_reverse	8	19	15	12	16	9	9	14	26	15
CCAGAATTTACCGAAT	ref_2534_reverse	6	33	7	12	36	8	37	7	55	8
GTGTTTCATATTTTGG	ref_2534_reverse	7	7	8	7	7	3	7	3	6	2
CCTTGTTGTTGATCCC	ref_2534_reverse	8	12	7	2	16	7	21	11	20	5
GGCAGTGGTGCAGCGG	alt_4258_missing	15	15	18	13	18	10	31	21	16	16
CGATGAGGCCAACCCT	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
GCTCCAGTTTCTTCCA	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
CTACCGCATTTCATCT	alt_4258_missing	37	46	48	33	64	48	68	28	51	51
CAAGGTTAAGTTGAGA	alt_4258_missing	4	21	11	9	21	8	20	13	17	5
TTCGGCTTATCGACCG	alt_4258_missing	6	21	22	8	26	15	16	15	27	9
ACAATTACGGTGTTCT	alt_4258_missing	20	35	14	11	27	13	14	10	25	15
CACCTGGAATGGCTTC	alt_4258_missing	37	97	67	63	95	44	108	47	105	56
TTGTAACGTGTTCTCA	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
GCCACCTGTATGTCAC	alt_4258_missing	2	5	1	1	7	1	5	0	3	1
GGACGGTAAGCGATCG	alt_4258_missing	52	91	85	77	86	57	71	52	81	58
TTGTAAATAAGCATGA	alt_4258_missing	6	15	12	7	16	9	15	13	16	8
TTTTGCATTAGAATAC	alt_4258_missing	19	33	25	13	35	21	22	15	17	12
GCGTTGGTATCTTTAG	alt_4258_missing	30	34	35	43	34	30	53	38	48	17
CCAAGCGATTCGGAAG	alt_4258_missing	7	16	7	7	20	2	14	10	16	6
CTCATTTGCATTTCTC	alt_4258_missing	23	36	43	32	50	33	49	38	49	32
CGGATCGCACTTAACG	alt_4258_missing	28	58	30	20	53	16	52	23	48	15
TACTTACCCTTTCGTT	alt_4258_missing	1	4	1	0	11	1	13	1	4	2
GCCGTTCACTGGTTTT	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
AATTAGTTGTTGCAAA	alt_4258_missing	28	46	32	31	49	26	49	21	49	11
GAGTTCCTAGGATTCG	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
CGTGAGCCGAAATGGC	alt_4258_missing	4	11	6	5	7	5	4	4	0	3
TTGATTGTCGAGGGTA	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
GTTCTTTTCATTTTTG	alt_4258_missing	43	58	60	46	63	66	42	45	66	38
TTTGGGACGAACTGGC	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
ACACACGTGAGTTAGC	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
CATTTTTCCGAGTCTT	alt_4258_missing	81	121	75	86	110	72	138	77	122	64
AATAGCTATTTCTAAC	alt_4258_missing	98	116	93	90	123	104	157	95	130	101
ATAATCATTTGCTGTA	alt_4258_missing	21	26	20	24	17	20	22	14	28	16
ATGTCGGCCGCACAGG	alt_4258_missing	8	19	6	12	16	7	18	14	17	15
TATTTATGGCTCCGTC	alt_4258_missing	161	220	188	134	284	164	282	174	248	165
CTTCGATAGAGAGTTT	ref_4258_missing	2	3	10	5	5	5	6	2	1	9
TGACTCAGGCGTCCGA	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
GTAGGCGGCTGGGTCT	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTTATGCCCTAC	alt_4258_missing	5	14	7	10	18	11	14	11	9	11
CAAGGGCACGATGGCA	alt_4258_missing	0	0	0	0	0	0	0	0	0	0
TTCGCATAGGTATGAC	alt_4258_missing	41	50	39	41	47	31	68	19	59	24
CCGCGAATGAAGCTTC	alt_4258_missing	16	31	14	11	26	22	37	16	29	21
GGGATATCCTGGTCAC	alt_4258_missing	6	5	14	4	5	5	4	2	8	3
TCCCTGCGCGACATGC	alt_4258_missing	20	42	23	22	31	30	43	32	38	32
ATTTGGGGCTATGTGT	alt_4258_missing	3	7	5	2	9	4	8	8	10	3
AGCGAATCATTCTTAT	alt_4258_missing	18	30	26	18	25	19	14	8	23	13
TCTTAGTCGTATCTAG	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
TCACTTGATGGCACTT	ref_5261_RC	77	65	87	66	83	72	65	42	86	56
TTCGCGTGCGGCTTCT	ref_5261_RC	35	34	40	41	37	31	46	24	36	28
GAACCCACTACAATAC	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
CTAGGTATTAATCTCC	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
CCCCTGCAGTCCAACT	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
GCTATTGAATACCCCC	ref_5261_RC	8	10	20	11	6	14	16	7	12	10
AGTCTGTTAATCGAGT	ref_5261_RC	13	16	13	14	16	10	13	14	27	7
AAGACTTCATCTCCCC	ref_5261_RC	14	11	9	6	16	11	24	19	19	5
TGTTGTACGCGCCTTC	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
CTGCTATTCGGTACGA	ref_5261_RC	8	13	10	13	13	8	22	11	16	12
GGGGGGGCCACGGCAT	ref_5261_RC	2	3	1	3	0	3	4	4	5	0
TTGCGCTATGCTAGAC	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
CGAATCAGCAGGGTTC	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
AAATCTACGAAATTGA	ref_5261_RC	44	53	68	63	36	61	41	41	48	57
GCTTGCACGTAGCGTA	ref_5261_RC	12	20	13	15	10	11	16	11	13	13
TTTCGGGTAGTCGTAG	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
AATAGTTTTGCATTTT	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
CATCTGCAGGCTGACC	ref_5261_RC	30	27	42	29	24	37	24	29	26	18
ACGTCCTCATTCGGGC	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
TCCGGTCGACCAATCG	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
GAGATCTCTTGCCTGG	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
CTCTTACTTTCGGCTC	ref_5261_RC	24	13	25	17	12	10	10	15	18	14
TTCGTCCGCAATCGGC	ref_5261_RC	3	4	9	6	3	10	5	9	4	5
GTGGCGCAGGGTACGA	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
TTTGTGATGGGGCCTA	ref_5261_RC	6	18	15	5	5	10	11	5	13	3
TATATTAACGGACGTT	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
GGTTGTCTTTAGTACG	ref_5261_RC	124	102	149	125	145	113	110	109	129	91
ACAGCGAACTCGGCTA	ref_5261_RC	57	64	66	73	62	74	54	62	60	48
TGGCGACGGTTTACTC	ref_5261_RC	40	21	38	32	26	35	25	43	30	32
TGGCCTAGCTACTGGC	ref_5261_RC	5	15	6	4	12	6	12	6	17	6
ACAATATCATATCCCA	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
AAACGACGCATTCTTC	ref_5261_RC	103	101	136	100	96	114	79	122	89	105
TATGCTACCCACATCG	ref_5261_RC	0	0	0	0	0	0	0	0	0	0
TCGCCAAACCGTTTCC	alt_5618_new	0	0	0	0	0	0	0	0	0	0
CTGAGAACCTTTCTGC	alt_5618_new	81	132	98	98	117	77	160	81	114	56
ATTGGGGACAATCTTA	alt_5618_new	1	1	2	1	1	1	1	2	0	2
CACTGGGGCTTCCGTG	alt_5618_new	4	12	8	5	7	1	9	5	11	2
ATTCCCTCCTACCGCC	alt_5618_new	8	7	9	7	16	6	8	8	7	4
CGACTACCGCTCGAGC	alt_5618_new	7	20	10	6	13	5	12	6	16	6
GGTTTTAAGATGGTGT	alt_5618_new	6	24	8	13	19	7	15	10	6	9
GTTGTTACGCATTCTT	alt_5618_new	19	25	24	18	25	21	33	16	35	15
CTTCGCGCACGCTCTC	alt_5618_new	47	120	63	49	131	56	147	42	124	53
ATTCATTTTCAGTTCT	alt_5618_new	32	32	35	25	44	33	40	29	28	19
GCTCCTCGGCCGTCCG	alt_5618_new	37	23	40	32	46	25	38	22	33	32
TAAGGTTGCTGATAAA	alt_5618_new	0	0	0	0	0	0	0	0	0	0
GGGTGCCGGTATGAGC	alt_5618_new	95	85	107	101	125	96	138	90	143	76
TTTGGACGATGCTTCA	alt_5618_new	10	18	15	15	14	6	19	9	16	4
GCTCGACGCCTACTTA	alt_5618_new	26	75	39	34	58	28	64	32	82	33
CACGACAACGCCGTTG	alt_5618_new	12	20	16	14	29	27	45	15	22	12
CCAGCCTCTGATCATC	alt_5618_new	0	0	0	0	2	0	3	0	1	0
CGGGCCTCATACCGAG	alt_5618_new	10	15	7	10	13	6	27	7	29	11
GCGATGTCTTTACCGA	alt_5618_new	0	0	0	0	0	0	0	0	0	0
ATTTCGGGTGGCGCCC	alt_5618_new	28	56	47	41	51	32	46	32	56	32
CGCTTAGACTATCATA	alt_5618_new	4	6	1	2	10	3	2	2	3	1
CGCCTACTACCGGAAA	alt_5618_new	13	33	15	17	24	13	15	14	18	9
ATCCGATATGCCGAGT	alt_5618_new	11	16	14	7	19	10	14	10	24	10
AGTGTTAAGCTTCAGG	alt_5618_new	32	31	26	18	26	17	34	14	38	20
CGCGCCTGTTAGACTT	alt_5618_new	24	42	38	27	33	17	43	28	44	18
AGCGAAACTCCCGCCG	alt_5618_new	0	0	0	0	0	0	0	0	0	0
GCTTTTTAATACCGGC	alt_5618_new	6	5	3	3	5	2	8	2	9	4
TACCCTAGTACTGTCT	alt_5618_new	7	15	14	7	8	7	14	8	16	11
ATCACAAACAATTCTC	alt_5618_new	98	112	122	114	146	108	139	108	144	80
GCACACATATGGTATT	alt_5618_new	22	36	24	22	36	19	42	17	39	14
TTTAGGGGCGCAAATC	alt_5618_new	16	19	21	21	26	10	31	20	24	15
TGTTGTTTGTCGTTTC	alt_5618_new	3	5	3	6	2	1	4	3	3	1
TCTTTATATGGGCTTC	alt_5618_new	43	57	38	29	59	42	56	46	57	30
TTGCCGAGATTGTGTA	alt_5618_new	61	104	105	69	133	65	105	63	137	61
ACTAGATCTTGATTCC	alt_5618_new	7	13	16	15	19	6	11	18	20	12
CCCACTATCATTACTC	alt_5618_new	36	76	51	48	63	43	57	47	53	38
TCTTCGTGTCATGCGG	alt_5618_new	3	2	1	0	4	0	1	4	0	2
GATAATCAGAATTGTC	alt_5618_new	0	0	0	0	0	0	0	0	0	0
ACATCAGAACGTTGGG	alt_5618_new	44	87	58	48	89	55	76	44	80	39
TCTAAAAAAATCTCGT	alt_5618_new	22	21	26	17	16	12	21	23	20	19
CTTTTAAGGCTCAAAT	alt_5618_new	26	33	25	13	28	12	24	21	34	26
CCTCGGGCGCTTTGTA	alt_5618_new	16	57	24	27	57	19	68	23	70	19
TATTGGCTATGTTACC	alt_5618_new	16	17	14	10	22	10	30	12	20	9
CTCAAAGCCCAATCTG	alt_5618_new	25	54	49	44	71	48	67	45	63	36
CAATCTGAGTTAAATT	alt_5618_new	20	18	15	13	24	19	24	16	36	9
ATTCCTTATAGGGATT	alt_5618_new	13	12	15	16	22	10	15	16	22	9
CCCAGCTGCTAAATGT	alt_5618_new	0	3	1	0	0	0	0	0	2	1
AGTAGGCATTCGCTTC	alt_5618_new	12	27	25	19	29	12	25	10	27	20
GTATCGTGTCTTCACT	alt_5618_new	5	5	5	10	13	5	12	13	7	9
CGCCCCCATACATGCC	alt_5618_new	0	0	0	0	1	0	1	0	1	0
GCTTTCCGCTGCTTGA	alt_5618_new	0	0	0	0	0	0	0	0	0	0
GTAATTTACTGAGAAT	alt_5618_new	13	19	14	18	25	13	22	11	21	15
CTTTTGATTAAGTATC	alt_5618_new	0	0	0	0	0	0	0	0	0	0
TAATATTACCTGGCTG	alt_5618_new	5	13	9	6	25	10	21	4	24	4
GATCAGGGATCTTTAA	alt_5618_new	0	0	0	0	0	0	1	0	0	0
GCACTATTACTTATTT	alt_5618_new	17	24	24	22	20	12	16	10	13	9
CTTCGCTTCCCCGTTT	alt_5618_new	3	5	0	0	3	0	2	0	5	0
TTGGCGCGCTGCATTG	alt_5618_new	23	44	34	25	20	27	42	21	40	21
TCATACGCTGGGCCAA	alt_5618_new	33	57	48	35	48	40	61	27	54	29
TCAACATCGCCCATCT	alt_5618_new	11	16	16	11	23	6	12	7	15	9
TCGGCACTACCTTTTT	ref_5006_missing	112	51	151	178	55	120	62	123	58	136
GACCACGTACCACTAG	ref_5006_missing	88	45	97	101	62	88	56	98	63	80
AAAATTAACCAGATGT	ref_5006_missing	76	30	92	83	28	75	44	66	38	71
GGACCCTACATCGTCG	ref_5006_missing	75	24	104	82	42	92	44	89	27	65
AGGTATCCAGATCGCT	ref_5006_missing	48	21	72	64	31	54	23	54	33	46
ATCGGCTCCATTCACA	ref_5006_missing	185	82	204	164	75	160	88	149	94	142
TCAGCGTGACGTATTA	ref_5006_missing	157	72	198	148	72	138	75	145	78	117
ATATTTTCCGTCGGGG	ref_5006_missing	91	42	124	123	49	89	47	105	40	98
GTATTTAGGCATTGGG	ref_5006_missing	35	21	44	37	9	15	21	30	11	32
TTCTGATGTGACGGGT	ref_5006_missing	171	83	204	199	97	174	91	191	78	147
ACAGCACGTCACGGTA	alt_5006_missing	8	6	13	11	10	18	8	19	5	7
GCGCTTGGTCACTGTG	ref_5006_missing	20	9	40	43	13	30	9	25	14	17
CTAATACTCTAAAAAG	ref_5006_missing	75	48	86	69	23	60	33	62	38	72
GCGGCCAAATTACCTT	ref_5006_missing	3	2	8	8	4	8	3	8	2	2
CGTCCTGATACGAAGT	alt_5006_missing	283	120	314	261	138	226	133	239	127	202
CGCCCTTACCTAGCCT	ref_5006_missing	35	18	33	23	20	22	12	22	13	25
TCCGAACCTTCTTTCT	ref_5006_missing	8	4	10	11	7	12	6	8	3	6
CCCGCAGCGTACCCCT	ref_5006_missing	24	33	60	41	32	36	28	56	31	32
TTCGACTTATGTTCCC	ref_5006_missing	0	0	0	0	0	0	0	0	0	0
AATTCTTTCCGCTCCG	ref_5006_missing	233	75	234	233	81	190	73	208	76	192
TGTGGGGCATATGATT	ref_5006_missing	2	0	3	4	0	3	2	1	1	2
TACGCCTTCGTACTCA	ref_5006_missing	73	40	81	80	41	56	33	60	29	60
CGAATGCATTTCTCCG	ref_5006_missing	81	42	88	81	34	67	33	73	27	55
TTTGAAACTCAGCATT	ref_5006_missing	65	32	76	65	37	52	24	69	39	51
TCGTGGTCATCACTGC	ref_5006_missing	18	15	19	23	14	21	11	13	11	18
AATCCTGTCTCTAACC	ref_5006_missing	12	7	16	18	4	6	4	8	9	12
TACACGTTTAGTTCTC	ref_5006_missing	194	101	205	208	115	179	105	159	111	170
ATTACTTTAGTCAGGA	alt_5006_missing	198	89	216	193	97	159	111	195	100	143
CATCCGGGAAAGTTCT	ref_5006_missing	22	10	36	25	13	18	8	29	10	27
TGTGCTAGTGACCCGT	ref_5006_missing	29	7	23	20	10	23	6	21	9	17
CTCCGAAGAAGTCCCC	ref_5006_missing	64	25	84	66	31	58	37	62	28	58
AACGCGCATTGATCAT	ref_5006_missing	56	27	78	65	26	52	32	43	49	41
GTTCCGTTCTTTGCTG	ref_5006_missing	100	39	121	92	44	85	40	105	46	79
GGTAGTAGACGAACTT	ref_5006_missing	21	15	32	24	10	28	11	27	14	25
CAGGCATACTATACTA	ref_5006_missing	0	0	0	0	0	0	0	0	0	0
GAGCCGGTCTATCGAT	ref_5006_missing	77	37	77	80	46	57	37	93	41	64
TTAGCGTATAGTTTCC	ref_5006_missing	295	111	338	327	138	279	140	263	143	260
TGATCGTGTTAGACGA	ref_5006_missing	52	25	59	53	25	50	16	46	29	33
GCCAAGGACCACAACC	ref_5006_missing	43	23	52	36	21	33	17	25	20	22
AGTAGACACCGAATCG	ref_5006_missing	0	0	0	0	0	0	0	0	0	0
CCGAAGCAGGGGGAAC	ref_5006_missing	7	14	21	18	15	27	11	20	9	12
TCCGCCTCTCAGAACA	ref_5006_missing	767	419	972	810	380	745	418	749	407	629
ATGAGCGTCGGATCCG	ref_5006_missing	9	5	15	17	3	5	7	6	2	8
TAACGTGTATGTTCAC	ref_5006_missing	63	23	79	78	42	59	38	73	25	64
TTCCTGTTGACTTAGA	ref_5006_missing	0	0	0	0	0	0	0	0	0	0
ATCCTTCAGGTTTTCT	ref_5006_missing	115	61	138	121	49	110	64	128	48	95
GTCACCCGATTAAGTC	ref_5006_missing	117	53	122	123	38	101	48	103	45	96
TCTCTTTTTTAGTGTT	alt_2654_missing	11	30	18	12	21	9	26	10	29	7
CCACCGAGTGCTTGCC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
ACGGAATTGTAATGCA	alt_2654_missing	53	139	93	65	132	65	149	63	165	58
CTCAGGCTAATCGCTG	alt_2654_missing	14	17	12	16	14	6	19	16	29	21
GATTGATAACCTTTGG	alt_2654_missing	31	55	41	19	65	37	78	35	79	29
ACATCGATGCGTAATT	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
GACTCTGATTTGTCGC	alt_2654_missing	8	10	4	5	5	4	17	6	11	1
AGATTTCTGAGTGGCG	alt_2654_missing	23	23	24	14	40	24	48	12	38	24
TAGGGCTTCCATCTTA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
CTTAGTCCTCGGATCG	alt_2654_missing	12	33	23	14	25	15	45	14	39	9
GTCCCTGTTCGGTGCC	alt_2654_missing	7	17	5	3	17	3	11	2	7	2
TTAAGTCTTGGACTAG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
ACTGTCAGTCTGACGG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
GAGTGTCGTGTAAGTG	alt_2654_missing	12	24	12	9	32	7	25	21	23	7
AGCATGTATCGCAAGG	alt_2654_missing	78	167	90	69	146	51	167	53	165	54
TAAAGATGCTCCCCTT	alt_2654_missing	9	64	20	21	61	15	82	13	71	7
CTGTTCTTTTACTTGA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
GGTCTCTGTTGTGCAT	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TTGTTGGTCCGGCATG	alt_2654_missing	33	80	44	47	80	43	67	31	79	28
TCTGGTGTTGCGCAAT	alt_2654_missing	24	46	23	21	56	17	42	18	43	10
GATGCGTATTCGTACC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
AGGGTATGTTACTGTA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
AAAGTCCTGCTGATAT	alt_2654_missing	8	11	2	5	7	1	14	6	5	7
AGGTCTGGCTTCCCAC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
AATGGCTCGCATGACA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
CTTTGGCGTCCAACCC	alt_2654_missing	4	14	4	3	9	4	9	8	13	1
CCTGGGATACTGCGCA	alt_2654_missing	5	12	8	3	16	2	8	3	12	5
TTGTAGCACAGATCGT	alt_2654_missing	21	27	23	12	32	13	29	12	42	18
GGTTTAGTATTGAGAC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
CGTTATGTTTGTGTCT	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TTAATGATTTGGGCCG	alt_2654_missing	12	28	15	8	27	9	20	6	30	11
GGATGATTGTTTATCG	alt_2654_missing	18	42	24	26	26	20	42	13	41	14
TCTGGATCATCAAGAG	alt_2654_missing	14	51	21	9	49	15	50	21	32	8
ATATAGTTTCATTTAG	alt_2654_missing	2	1	1	1	0	1	3	2	1	0
AGCTGCAGCCGTCTTT	alt_2654_missing	13	35	19	27	25	6	43	12	32	11
TAGGATTTGAGAGCAC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
CGTAAGGCTGTGACTT	alt_2654_missing	0	9	2	3	7	2	11	4	3	0
CACATTGAGACGTCTA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TCGCCGTTATTTCCCA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
ATCAATAGTGGCTTGG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
CCCCCTCTTTCAGGTC	alt_2654_missing	9	32	12	18	35	14	36	6	39	9
GCGAATAGCGATCTGG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
AATGCTCATTTCAACC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TCGGATGGTTGAGGCA	alt_2654_missing	17	30	17	10	37	8	36	16	45	14
TATCTTAGCACTCCAC	alt_2654_missing	5	3	5	1	10	3	9	2	8	2
GCACCTTGGTTCAAGG	alt_2654_missing	45	86	57	37	102	53	118	48	120	29
GTGGTTTACTATGCTC	alt_2654_missing	7	11	8	4	13	4	8	3	7	5
CCTCAGGTCTTCTGGC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TTCTTTTTTTCATCAA	alt_2654_missing	7	6	13	5	8	3	3	1	11	2
GGTACGTCGGATTTAC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
AATATCTCAGGCTTCG	alt_2654_missing	12	30	14	10	27	11	24	12	13	9
CGATAGGTTGCCATGC	alt_2654_missing	8	19	14	5	22	6	21	6	21	9
CGACATGATATACTGT	alt_2654_missing	13	25	19	10	33	12	22	14	23	3
TACCTGTAAATAATAT	alt_2654_missing	25	54	15	24	39	15	44	22	40	17
CTCTGCCTAGCCAAGT	alt_2654_missing	5	3	4	3	10	3	4	0	2	0
CCGATGACCTGGTAAC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
GTTCTATAGCGCAGTA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TAATCCGTTGGCACTG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TAGGTTATCTGTAGTT	alt_2654_missing	4	8	5	2	8	1	13	4	18	5
TCATTGATTCATTACC	alt_2654_missing	3	7	4	8	6	3	11	3	14	3
TTGATGGAATACGTTT	alt_2654_missing	8	17	7	10	13	4	18	11	13	7
ACGGCTTCTGGTATCC	alt_2654_missing	10	55	30	33	45	30	42	6	32	26
ACCGTTGTTTAATTTT	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TCTTTGATGTTTCACT	alt_2654_missing	67	139	88	78	108	69	134	60	151	60
CAGCAAGTATACTCAA	alt_2654_missing	10	24	10	10	30	9	23	11	21	5
TTCGTCCCATCGTCAA	alt_2654_missing	5	10	3	4	12	3	11	3	6	5
GAGTGTCGTCTAAGTG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
ATGGTTCGTGTGATTG	alt_2654_missing	1	1	0	0	3	0	2	0	1	0
GTCCTGTTCGGAAAGC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
CATTGTTTTCTGCTCC	alt_2654_missing	17	21	15	16	32	12	27	17	35	8
GTCATGGAATGCCTCA	alt_2654_missing	2	9	3	0	7	0	2	1	6	0
GCAAAGGTCTCCCCAA	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
TATAGTTGTCGCAGCG	alt_2654_missing	4	23	16	12	37	13	27	8	20	6
TACCGGCATTGATTCT	alt_2654_missing	4	8	2	4	5	1	4	2	6	5
GCCCAACCACAGAGGG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
ACTTGTGTAAACGGCC	alt_2654_missing	24	56	21	31	52	24	52	21	50	24
TTAATATCCAGCCGGT	alt_2654_missing	23	55	18	27	67	15	74	20	78	15
TGCTATACTTGGATAT	alt_2654_missing	10	29	14	9	19	12	24	6	24	9
GTAATTAGGGTCAAAA	alt_2654_missing	5	7	6	4	7	7	12	3	12	6
GCAGGATGCAACCTGC	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
GCTTCTCTTTCAGTAG	alt_2654_missing	8	20	3	6	21	6	18	6	29	8
TGGCTAACTTGCCACC	alt_2654_missing	5	5	1	7	4	0	3	1	7	5
CACCTGGAAAAGACAG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
ATTTGGCTACGTAGTG	alt_2654_missing	17	27	12	8	21	18	42	16	38	8
ACAACGTTAGCCGGCG	alt_2654_missing	37	73	45	30	59	28	68	40	81	41
GCATTCGGGTTTTCCG	alt_2654_missing	0	0	0	0	0	0	0	0	0	0
GCGGTTAAGACGCGCC	alt_2654_missing	10	22	7	9	22	8	22	9	16	11
ATCAGAAGTGGCCACG	alt_3943_RC	26	54	42	39	39	30	46	41	43	42
TGCGGTATCTTTGGCG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CATAGGGCGTGCTATT	alt_3943_RC	27	27	50	23	41	43	29	33	44	38
TTTTTATGCAAATCAC	alt_3943_RC	35	44	47	38	41	38	38	29	54	35
AACCACTTAACGGTGC	alt_3943_RC	48	63	46	61	64	43	71	58	80	53
GTGCTGTTCCAATTGG	alt_3943_RC	55	62	53	44	48	43	46	64	56	41
TGATATCCTTTAGGCA	alt_3943_RC	2	2	1	4	2	3	3	2	1	2
CCTTGATGACACTCAC	alt_3943_RC	22	48	19	28	36	16	42	23	28	20
GAGGACACGCGTAATT	alt_3943_RC	160	163	186	167	156	174	183	137	169	157
ACCGATCGGGTTCGTG	alt_3943_RC	16	26	21	20	19	20	33	14	43	10
ATTGTTTAAAGTCTGC	alt_3943_RC	26	49	39	46	39	27	35	35	52	22
TGCCTTTCGCCCCGTG	alt_3943_RC	12	22	20	15	15	15	12	12	17	11
TTAAACTGCCGAATCG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGGATAATATCG	alt_3943_RC	25	44	31	35	29	30	29	28	22	26
CCACAGGTAATTTTCG	alt_3943_RC	22	25	22	29	20	24	36	15	31	14
GCAGCGTTTTACGCCT	alt_3943_RC	36	54	71	58	52	35	71	51	57	43
TCCATGTAGGTATGAG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CCGTCATGGTTACTGG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GGGCGTCCTCGCACCG	alt_3943_RC	38	53	60	52	67	36	40	57	55	42
CTACTTTGTCTTTACT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
ATTCAGATGCACCAAG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CTTCCGCATGTGCACC	alt_3943_RC	0	1	1	0	2	0	1	1	0	0
TAGATCGGGGCTATCA	alt_3943_RC	72	46	74	75	78	52	83	59	71	48
GATCATTAAAATCTCG	alt_3943_RC	94	123	109	101	109	114	103	120	91	119
AACTAAGTCTGTTTTG	alt_3943_RC	81	102	116	95	101	64	125	72	117	81
CGCGGTTGTTCTGTTG	alt_3943_RC	50	37	41	43	36	33	39	29	35	22
CGCTGTAAATCCTAGC	alt_3943_RC	15	20	15	7	9	5	15	13	24	10
AGTTACGCGCCTGAAG	alt_3943_RC	15	7	19	12	26	8	22	9	14	17
AAGATGTGTGTAGGTA	alt_3943_RC	63	71	73	60	83	75	77	41	75	66
TTGAGCGATGAACTGC	alt_3943_RC	21	19	18	21	22	23	25	12	28	16
CTTCTTTGCTAGTAGG	alt_3943_RC	4	0	10	6	4	7	4	9	8	10
CGTATATCCTTACCAT	alt_3943_RC	29	59	49	34	48	40	50	36	48	35
ACTTTTTTTACCCAAC	alt_3943_RC	40	23	38	36	44	42	33	22	41	39
TCCACACAGGCACCAT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
AGGACCCTTACCGCGG	alt_3943_RC	25	30	29	30	46	18	39	26	32	30
CTCCAGTTGGTCTCCC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TCCTTGGAGCGCTGCG	alt_3943_RC	105	117	139	139	117	114	130	102	153	110
CGTCGTTTTCTTGCAG	alt_3943_RC	87	112	104	68	114	104	100	74	109	89
TTTAGGAGGCTAAGTA	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TTTAGCTACAGTTCTG	alt_3943_RC	12	15	8	8	12	5	13	9	10	8
TTCTAGTTTAACTGCC	alt_3943_RC	17	15	19	17	28	13	25	15	14	16
GTCTTTGCTCCATTTC	alt_3943_RC	27	50	43	43	35	41	43	39	47	24
TCTACTTAAAGTGGAA	alt_3943_RC	30	27	39	36	48	33	47	29	25	31
CCCTGGAACCATTATC	alt_3943_RC	9	29	21	20	32	7	34	12	30	7
CGCGCCCAGTCGGCAT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GCCCGAAATGAAGGCA	alt_3943_RC	160	136	158	152	135	152	143	143	160	169
TGCGCTTATGATCAAC	alt_3943_RC	47	63	61	48	58	52	85	32	58	40
CCTATAAACACTAGCT	alt_3943_RC	28	24	23	16	31	18	27	23	25	20
ACTGCACATGAGCCAG	alt_3943_RC	5	12	16	6	10	8	18	7	9	6
ATGATCATCGCTGTCG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CACCAGTATTCCTCGA	alt_3943_RC	4	11	17	11	13	13	20	8	7	1
CCGTCTGGCATTGCCC	alt_3943_RC	6	9	6	5	6	7	8	5	3	7
GGTATTGCCGTCTTTG	alt_3943_RC	80	101	114	112	91	84	84	57	109	78
CTCCTTAAGAGTTCCA	alt_3943_RC	81	95	85	81	129	70	98	83	136	65
CGCAGTAGCACATACC	alt_3943_RC	7	12	6	9	9	13	12	7	7	9
GCTGACACATCGTCAC	alt_3943_RC	72	65	98	79	110	68	74	74	87	77
GATGTATAGTTTCTCC	alt_3943_RC	50	38	60	62	48	47	63	56	60	36
GTCGTCAGCTCCCGCG	alt_3943_RC	108	144	154	140	126	132	182	110	163	126
AGGTTTCCTGGCGTCC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GCTGTTCATTGCTGGC	alt_3943_RC	26	37	30	31	35	20	35	15	36	31
GTTCGGGACTTAATTC	alt_3943_RC	13	29	16	17	27	14	22	20	26	29
GGGAGGCCTCGCTATC	alt_3943_RC	37	25	54	31	38	42	47	39	39	32
AGGAGCTGGTATAAAC	alt_3943_RC	37	22	37	19	17	26	29	26	23	20
TATCTTCCTTTTGTCG	alt_3943_RC	339	296	396	359	306	324	331	324	340	313
AGTTCTTGTCTAAAGT	alt_3943_RC	22	24	28	28	31	32	23	24	26	21
AATAGCCGCTATTATG	alt_3943_RC	7	6	4	8	7	4	4	3	8	7
ACCGTTGTGGGCTGCT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TACCAATTCGCCCACC	alt_3943_RC	30	31	57	37	31	41	28	35	42	36
CTTCCCCCTACTCCAA	alt_3943_RC	3	1	1	2	3	2	2	0	4	2
GACTCTCGACTGCCTC	alt_3943_RC	23	35	32	32	32	34	32	33	31	21
AACCTGTTGCAAACAA	alt_3943_RC	3	11	9	6	9	7	9	7	6	2
TCATAATTCTGGCTCG	alt_3943_RC	20	33	29	24	34	19	24	23	30	14
CTATGGTATGTGTCAT	alt_3943_RC	45	42	45	38	54	32	59	46	61	47
TAGATTAAGATGAGGC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GATAATCTATGGGTTA	alt_3943_RC	35	32	51	44	38	30	39	26	41	34
TTTCTACCCGTTTTTC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GTCCCGACGTAGGAGT	alt_3943_RC	11	22	13	16	32	15	22	10	21	13
TTTAGTGCTGGTCTGG	alt_3943_RC	1	1	4	2	8	1	1	1	2	0
TGGACGCACGACACGT	alt_3943_RC	29	51	57	39	61	44	61	47	60	37
GTCATCAAGGGGGGGT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
ATAGATTTAGTGGCAT	alt_3943_RC	27	28	33	31	25	24	29	19	21	27
GTTATACAGCCGCCGT	alt_3943_RC	11	5	6	14	14	5	15	4	15	8
GAAACGCCTCTGGAAC	alt_3943_RC	35	42	38	47	35	42	33	37	38	39
ATGCTTATACTTCCAT	alt_3943_RC	73	95	67	67	88	69	97	72	92	63
GCTCTGTTTTATAGGA	alt_3943_RC	93	128	110	102	90	80	123	93	123	84
TTGTGTCCTTACTTGG	alt_3943_RC	39	46	56	47	38	37	35	34	43	28
TTGTTATTGCACGTGG	alt_3943_RC	14	13	13	11	20	14	31	10	20	8
GTAGGTTCTTGATCGC	alt_3943_RC	1	6	5	2	5	8	4	3	5	9
CCCCGTGCAAGCCTCG	alt_3943_RC	48	57	68	48	44	42	48	42	56	42
AGCGACATTATTGGCA	alt_3943_RC	65	61	91	62	86	70	74	68	100	44
TCGTGTCGTTTAGCTA	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GTCCTTCTATATCTGC	alt_3943_RC	4	9	10	7	2	7	7	4	6	9
ATTTACCACGAGCTAG	alt_3943_RC	117	108	117	102	112	95	111	101	127	104
TGAAGCAGATCTTGGG	alt_3943_RC	13	11	6	10	3	4	11	4	5	6
TGGTGCCGAACCTTTT	alt_3943_RC	27	28	30	26	31	25	38	26	24	24
TACCCATCAACTCGTA	alt_3943_RC	32	50	40	33	52	34	49	28	44	18
GCATACACCCGGTTCT	alt_3943_RC	86	89	103	101	95	83	111	84	118	74
ACCTTTTATCTTCGGG	alt_3943_RC	54	64	71	61	77	49	75	52	88	56
TGTTAGCGCTAAACTA	alt_3943_RC	32	35	53	29	33	40	32	27	35	23
TTTTGAATCTTGTTGT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CTTCTGGCATGTTCTC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GTTGAATATGAACTAT	alt_3943_RC	22	23	28	12	19	15	20	14	17	18
AGAGTAGTTTCCTCTA	alt_3943_RC	30	26	26	35	45	29	53	25	46	42
GTTCGAATTTCTTTTG	alt_3943_RC	12	19	9	12	5	4	7	7	8	6
TGGTTGAGACGCGTTC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TGGCGTTTGCATTATG	alt_3943_RC	12	9	15	16	25	9	29	9	22	15
GCTCTTAATGCTTGTA	alt_3943_RC	67	99	77	84	126	81	126	62	109	60
ATTCATTTGAGTCGGT	alt_3943_RC	67	78	104	86	61	86	109	68	79	61
AGGGGCTGGGGTTCAC	alt_3943_RC	2	3	0	1	6	1	2	0	7	4
TTTGCATGGAGCATAC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GAAACATAAGGACTAA	alt_3943_RC	46	38	38	27	21	36	33	34	43	37
TCTTATACCTCGAGAC	alt_3943_RC	0	4	3	2	1	2	1	1	0	1
ATTACTTGCGATAGCG	alt_3943_RC	23	18	16	16	18	24	24	20	29	18
TTAAGTATTTGCTGTC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
ATTACATCGTTCCCCG	alt_3943_RC	17	21	17	14	28	13	32	13	30	10
TTAGTACAAATCGCAA	alt_3943_RC	11	16	23	12	15	13	23	11	27	10
TTGGTTCTGTACTTCG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CCTCAGATCACTGTTC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GTTCCCATGAGACCCG	alt_3943_RC	19	26	28	21	23	30	23	25	37	18
AGTTTTTCGAGTGGAC	alt_3943_RC	31	52	56	34	52	35	53	27	60	37
CTCTTTGGTCGATCGG	alt_3943_RC	29	40	47	30	41	40	45	30	47	44
GAGTTTTTTCGTAAGG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TCCCGGGTTCAATCTG	alt_3943_RC	19	12	9	9	14	13	17	10	16	9
GGACCACTCCGTTCTG	alt_3943_RC	18	24	23	23	15	16	22	19	25	21
TATCTGGGTGCCTGAA	alt_3943_RC	21	18	29	22	31	19	23	35	18	20
CCCATTAATGACCTGA	alt_3943_RC	40	64	60	37	47	51	57	47	55	49
TCCTTCTAGCTACCTT	alt_3943_RC	27	21	31	17	35	33	26	33	31	21
AGTCTCTGCTATCATG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TTGTTTCATGTTGTGC	alt_3943_RC	80	112	98	90	83	94	106	48	147	79
GGTACCTTGCACCTCT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CTCAGGGGAAGGGTAG	alt_3943_RC	37	32	49	39	42	39	55	32	59	40
AAACTTCTATCAGTTC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CGATAATCGTGCAACA	alt_3943_RC	17	28	35	34	43	26	28	20	34	12
GAAGTTATACGTCCAC	alt_3943_RC	12	20	20	14	19	16	12	18	10	15
CGCGGCGGACCTAATC	alt_3943_RC	22	27	19	15	20	17	25	13	25	19
CAGTGCCGCGCCGCAG	alt_3943_RC	20	24	21	21	26	24	22	22	24	18
TGTCGCTCAGGACTAA	alt_3943_RC	60	93	71	57	79	59	74	50	76	63
TCTTCGTCCTGGTGGA	alt_3943_RC	13	20	25	27	28	21	28	29	28	14
TCTCAATAAGTGGTCT	alt_3943_RC	12	14	14	11	10	13	17	14	13	12
GTCTTGCAGTGCTTCG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CGACGATTAGTTGTAC	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
CCAACGTCAACATACC	alt_3943_RC	2	5	2	2	9	0	3	5	9	1
CTTAAAGCACAACCGG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TAGCTCACATTATTTT	alt_3943_RC	33	33	41	27	28	28	34	24	37	33
TAGGTAACGCGGAGAC	alt_3943_RC	53	41	60	50	64	40	60	46	52	43
AAAATTTTGTTTTATT	alt_3943_RC	0	0	0	0	0	1	0	0	0	0
GCCTTCAAAAACTTCG	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
GTCCGTAATGTATGAG	alt_3943_RC	15	22	24	18	17	16	24	20	21	15
TACTCATGTCAGAGGT	alt_3943_RC	18	27	22	25	27	20	19	23	21	20
ATTCGTCAATTTGTCA	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TATTCTCGGCTATAGC	alt_3943_RC	28	43	18	15	22	31	23	15	18	28
AGTCAAAACTTTCCCT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TCGTCTGATACCATCA	alt_3943_RC	84	87	100	80	81	79	70	99	84	66
GCCTTCGCCCGATTAT	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TAGCTACTGGCTTGCT	alt_3943_RC	108	123	129	89	142	112	127	105	127	102
CCCATACTGCATTCTA	alt_3943_RC	217	299	253	285	304	183	289	213	325	202
CTCCCGATATGCCTAT	alt_3943_RC	1	7	1	1	7	1	14	0	9	4
GCCAATCTGGCTAAGA	alt_3943_RC	22	33	15	17	28	23	19	14	20	19
GGGCTATTATAGCTCA	alt_3943_RC	0	0	0	0	0	0	0	0	0	0
TGGCTTCCCTCCCATA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGTGACCGGAGTA	ref_2029_upstream	867	224	1035	962	282	864	254	792	284	785
TGAGGAGATTGTTAGC	ref_2029_upstream	267	107	321	305	89	274	100	234	100	224
TCACCTATTGTGTGCG	ref_2029_upstream	81	25	97	97	17	85	25	99	25	71
ACGGGGTTTGTTCCAG	ref_2029_upstream	130	31	165	164	41	116	46	140	53	113
TCTGTGTAAGCAATGG	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTTATTTGTAGTG	ref_2029_upstream	264	89	332	282	77	281	79	240	84	238
AAACATACGTTGCGAT	ref_2029_upstream	290	89	337	285	52	255	79	267	65	252
CTCTTACGACGGTCAT	ref_2029_upstream	132	63	191	158	70	122	66	115	61	146
CCTAGCAGGCAATCCA	ref_2029_upstream	219	95	336	283	75	246	106	250	70	220
TCCCGCTCTTTCCCGG	ref_2029_upstream	67	23	68	86	21	67	25	82	20	52
AATGATTTTACGTTCT	ref_2029_upstream	9	2	9	8	0	7	6	9	0	5
TATCCGGATGTCGATC	ref_2029_upstream	184	68	208	162	55	170	58	175	57	142
TGCCCGGATCTAGAAC	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
TCAATATTGTGGATGC	ref_2029_upstream	7	1	6	5	0	2	3	5	1	5
AGCAGCCGTTCTCGCA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CCCCAGCCGTCTTTCC	ref_2029_upstream	196	88	249	208	59	181	76	160	68	199
TTGTTCCGTACCCAAT	ref_2029_upstream	30	4	19	22	13	11	2	23	8	15
CATAGGCGTCGCGTGA	ref_2029_upstream	149	57	183	175	43	177	66	187	50	150
TGGTACGGTCGTACGT	ref_2029_upstream	26	11	37	29	16	30	6	25	6	24
CGAGCCGTTGTACGTC	ref_2029_upstream	4	7	10	9	6	8	4	16	2	3
CTGGGGCTCTGACTAC	ref_2029_upstream	159	51	195	154	47	129	59	144	48	130
TGATACATGTAACCAC	ref_2029_upstream	87	24	133	107	23	90	42	114	47	93
TTATGTACTCAATCAG	ref_2029_upstream	60	19	49	69	18	33	28	57	29	37
TGTCAGCTGTTCTTTT	ref_2029_upstream	145	47	155	138	49	159	45	121	61	119
GCGAAACTCCCGTACG	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGTTTTCAGGATG	ref_2029_upstream	136	51	168	166	39	136	38	136	44	130
TATTTCTGGACCTGAC	ref_2029_upstream	50	30	49	56	27	45	27	30	22	42
GCTGGATTGGTATAAA	ref_2029_upstream	46	21	68	63	22	56	18	47	25	61
TGACATCGTACTAAAT	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CATAACACACACGTTT	ref_2029_upstream	48	17	79	62	18	63	21	51	20	49
TGGGCGGCAAGTGGGA	ref_2029_upstream	77	25	83	101	26	81	18	59	21	77
GCAAATACGTGGATTT	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCAATCGTGGGAT	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
TACTACCGGACTGGCG	ref_2029_upstream	30	11	58	45	13	37	10	40	15	37
AATTGATTGTCAACCC	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CGACGTTCTGTCGCCT	ref_2029_upstream	141	39	150	147	46	103	47	126	52	98
TACGCAACCTCATGTG	ref_2029_upstream	25	8	39	34	9	30	6	24	23	22
TTGATATCATTCGGTA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
GTCATTGAGCGTTAGG	ref_2029_upstream	4	3	6	5	3	5	2	3	2	1
TGGCGGACATGTCTCG	ref_2029_upstream	91	41	102	82	30	84	28	72	32	85
ACACCCACGGGCTCTG	ref_2029_upstream	29	7	34	26	4	31	6	29	5	21
TGGCATAGCTCCTGTA	ref_2029_upstream	127	49	167	150	54	139	51	126	28	132
ATTTAGGGTGTAGATT	ref_2029_upstream	98	48	124	124	40	93	34	98	48	92
AGTCTCGGTCTAGTCA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGGATGAGAGCGT	ref_2029_upstream	346	100	368	319	115	318	87	342	104	314
TTAGGACCGTTCCTAG	ref_2029_upstream	80	27	94	78	33	61	38	64	28	55
GTCTGAAAGAACGTTG	ref_2029_upstream	257	93	291	247	66	251	68	250	58	212
AGATAAGCCGTCGTTT	ref_2029_upstream	116	42	147	106	35	127	38	109	37	104
AAGGAACATTCTGACA	ref_2029_upstream	41	16	50	47	14	54	31	43	17	45
GCTTAGGATCTAATCT	ref_2029_upstream	128	36	179	154	43	141	49	150	53	131
GCTCACGGTTTACAGC	ref_2029_upstream	35	7	48	29	5	28	12	29	13	31
CCCATTTGGATAGCCT	ref_2029_upstream	112	41	96	95	38	86	44	86	47	82
GGTTTCAGCGATATCA	ref_2029_upstream	24	3	32	16	3	22	3	19	3	17
GGTTATGTTAGCGTAA	ref_2029_upstream	82	31	94	74	35	88	30	84	39	83
GTGAGTAGGTTGAAAA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTATACTATATTA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
AAACCTCCATTACATG	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGCTCCGGGCCCT	ref_2029_upstream	561	180	714	586	168	582	150	558	171	543
GTCTGGTAGGCTTCTC	ref_2029_upstream	43	8	52	28	8	31	5	41	6	32
CGCATGTCGTTAATTC	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CACTCTAAATTCGGGT	ref_2029_upstream	245	73	292	242	64	240	82	210	79	207
GCATAGTATCCTGCGA	ref_2029_upstream	42	9	50	46	15	38	18	30	11	39
TCTTTTGTTTCTCAAG	ref_2029_upstream	132	41	115	99	36	102	32	93	37	88
GTGAATCGCTGCCCGT	ref_2029_upstream	68	19	71	56	17	60	20	44	9	48
TGCGTAAGGGTCGTAG	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCGTCCGAGGCAA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CCTATGATGGAGGGTT	ref_2029_upstream	56	25	80	88	34	69	24	66	29	65
ACACGCAGTAGTATAT	ref_2029_upstream	126	36	154	121	43	124	40	116	50	109
GGCCCGAAGGGAGATC	ref_2029_upstream	185	61	229	195	59	167	64	154	71	180
TTAGTGGCTCGTCTTA	ref_2029_upstream	214	66	309	268	90	254	80	273	81	250
GGGCCTATTAATTGGT	ref_2029_upstream	77	15	60	73	25	57	19	47	20	54
GTTAGGTGCCTAGTAC	ref_2029_upstream	117	50	148	154	57	161	61	162	48	154
GTGATACGGTCTCGTT	ref_2029_upstream	325	148	423	374	149	350	162	326	142	319
CATTTTTTTACCGGCA	ref_2029_upstream	148	48	204	167	50	149	51	143	54	130
TGTGCTGTAATAACCA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
CTTTATCGTTTTTAGC	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTCTGTCGGGTAG	ref_2029_upstream	170	53	186	172	65	153	59	126	59	149
TCCCCGTCCGAGGCAA	ref_2029_upstream	0	0	0	0	0	0	0	0	0	0
AACCATGGGTTACCTA	ref_2029_upstream	87	30	114	126	25	95	31	67	38	110
CTGACTGGACATATTG	ref_2029_upstream	60	22	83	76	13	48	16	50	21	53
AGGGTGTCTGAATGGT	ref_2029_upstream	206	62	271	209	93	181	81	168	80	177
GGCTCGTCGGGCATGC	ref_2029_upstream	549	143	707	647	157	587	160	635	158	515
AGCATGAGTCGGGCTC	ref_2029_upstream	74	26	112	65	32	77	35	62	13	69
TACTAGAGATTATTTT	ref_2029_upstream	28	14	24	25	9	21	8	26	12	18
TCTACGTTCAACAGTC	ref_2029_upstream	1	0	6	3	0	3	1	2	1	0
TCGTCTTGTTCATTTG	ref_2029_upstream	64	33	99	64	13	72	18	86	17	61
AATGATTCAAGCTTGG	ref_2029_upstream	192	83	266	214	58	175	54	175	57	182
TTATCATGGAACTAGG	ref_2029_upstream	14	7	12	15	9	12	5	10	4	9
ATCCGGCGCCTTGTAG	ref_2029_upstream	98	23	89	113	28	82	31	88	20	90
GCTTCTACCGCACACC	ref_2029_upstream	156	81	272	215	63	189	82	208	80	179
GCAGACAGAACTGCTA	ref_2029_upstream	28	11	44	30	16	33	17	52	18	31
TGCTAAGGACGGCGCG	ref_2029_upstream	357	134	496	425	127	409	138	393	139	381
GTCCACTGCCCCCGGC	ref_2029_upstream	136	186	235	142	197	158	191	145	220	148
TGTCGTTGTGCGACCA	ref_2029_upstream	4	4	3	2	3	3	3	1	5	5
GTAATCGTATTCTGCT	ref_2029_upstream	138	40	179	125	38	151	46	123	49	128
GCTAGATTGTTAGTAT	ref_2029_upstream	79	21	111	94	30	97	28	85	34	87
GCTTCGATCTTATTCG	ref_1349_missing	35	63	39	33	58	35	80	19	56	35
GTGCAAGCTCTCTGGG	ref_1349_missing	6	14	5	4	17	6	22	6	17	2
GGGAAAGACGGTCCGT	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
GATCCGTAATGTCTTC	ref_1349_missing	52	73	35	32	86	44	90	35	73	53
GGGATGGTCTTCGATA	ref_1349_missing	7	18	6	7	10	3	16	7	14	4
GCATCCATCGTTAAGG	ref_1349_missing	7	62	19	22	66	13	51	11	52	9
TCCGGATATAACCACC	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
AGTAGGGGCTTGTGCT	ref_1349_missing	49	123	66	52	98	42	101	35	107	42
TTGGACTTCTATTTTA	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
TCGCCGTCCGCAGTAA	ref_1349_missing	4	4	4	4	5	2	9	0	4	1
TTTCTGGTTCTTACAT	ref_1349_missing	9	15	17	5	21	9	35	12	32	6
CGCCTGTATTAATAGC	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
AGTCTTAAATAGACTT	ref_1349_missing	48	117	50	53	125	49	112	55	141	55
CAAACGCTCATCTAAA	ref_1349_missing	54	77	60	51	97	43	77	51	128	36
GCACATTTGGTCAATA	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
TTGATGTCTGTTGCAC	ref_1349_missing	54	66	46	30	86	32	73	28	73	45
TGCAGCTCTGAGCGCT	ref_1349_missing	2	6	13	9	14	8	21	4	13	4
GCGAACCTTCTCGGGT	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
TCCCAGTAGGGTGTCA	ref_1349_missing	13	16	7	9	18	4	16	12	17	4
GTTAGTGCCTTCTCGA	ref_1349_missing	18	28	15	9	37	5	36	19	19	11
GCGCACTATCCGTGTG	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
CTTAAACGGCTTGGCA	ref_1349_missing	10	7	9	9	24	4	14	5	24	10
CGCACTGGGTAAGAGG	ref_1349_missing	89	169	91	72	119	59	168	67	146	64
TTTTTCTTGGCTAGCG	ref_1349_missing	10	12	8	5	19	7	19	3	11	9
GTTCCTGCCCCTCGGT	ref_1349_missing	14	24	15	13	28	14	33	8	27	10
TATAAGTACGGCTCCA	ref_1349_missing	18	22	14	6	33	10	23	14	23	8
CGTTTTGGCGGCTCCG	ref_1349_missing	31	50	39	34	61	35	60	35	59	24
TTCCGCCGACCTGGCA	ref_1349_missing	6	11	7	6	8	2	15	1	12	2
TGCCGTACCCAGCGGG	alt_1349_missing	0	5	0	5	1	3	2	2	4	0
GAGTCCAGTGTTACTG	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
CATCGTTTGCTCATCA	ref_1349_missing	67	131	83	74	134	52	118	77	139	58
GGATGCTAACTCCTGT	ref_1349_missing	3	16	10	5	20	6	18	7	18	4
TTAGTGCTCGCGGGTA	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTAATTCCGGGG	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
TCGGATTGTGTAGCGA	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
TTCGCGGTTTCGCCGT	ref_1349_missing	119	217	117	126	253	105	230	89	231	91
TTTCCTTACCGTCTAT	ref_1349_missing	4	18	4	6	13	6	17	4	22	9
CAGCCCCGGCCGCCTG	ref_1349_missing	8	34	11	7	30	9	30	5	41	4
CGCCCGTTTTAACATA	ref_1349_missing	1	1	3	0	0	5	1	0	3	3
TCTCGAGGCCACCTTC	ref_1349_missing	18	39	19	24	47	10	33	17	32	10
AGGGACACACTGTTAG	ref_1349_missing	0	0	0	0	0	0	0	0	0	0
CTGATGACTGGGTTAA	ref_1349_missing	6	12	8	1	4	3	9	5	14	4
TAATTGCTCCTGGTTT	ref_5038_RC	34	31	58	37	34	42	38	27	37	39
GCCTTCACAACTGCCC	ref_5038_RC	40	65	65	72	55	45	45	52	54	48
AATCTGGATTGATCTC	ref_5038_RC	4	5	9	9	8	4	8	8	5	15
CCAGACTATTTCATAT	ref_5038_RC	14	24	21	14	15	5	19	16	25	12
TTGTAATGTTTTATGT	ref_5038_RC	19	13	9	10	14	15	18	14	18	14
CGTATGGTTGGCGGAA	ref_5038_RC	15	8	17	12	13	9	19	12	19	12
TCTGCTAAATTCTACG	ref_5038_RC	36	34	58	33	48	44	29	45	39	38
GCGAGTTCGGATTGCA	ref_5038_RC	14	11	10	15	11	13	23	14	12	6
GTAGCTCTTTATCACG	ref_5038_RC	158	126	185	139	137	128	139	140	167	136
TGTCGGGTTTCTTCAG	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
AGTTCCTTACGTTTTC	ref_5038_RC	18	13	18	26	20	25	26	26	23	14
ACCCTCATTGTAGTGT	ref_5038_RC	19	19	12	11	7	11	12	6	20	8
TATTAGGACTTCGTTT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
AGCCTTTATAGACCAT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
CCGGGAACTCCGGGCT	ref_5038_RC	2	5	4	5	3	0	2	0	0	1
TAACTCCGTAACACAG	ref_5038_RC	24	44	31	33	24	20	27	25	25	25
TTCGTAAATGCGTTGA	ref_5038_RC	30	22	47	41	40	37	31	39	31	39
GTAATTTCGAGATCAT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TGCTTCAGTGCAGCCC	ref_5038_RC	70	45	77	69	75	54	57	55	54	58
GGCGCTCCCCACTCTA	ref_5038_RC	2	7	3	8	8	4	7	5	10	3
GCCTCTCGTTCCATCT	ref_5038_RC	20	7	16	20	16	17	9	11	14	15
TTGTGAGACCGTGCAT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TAGTCGCTGGTTCTAG	ref_5038_RC	63	47	43	55	42	54	41	44	45	49
TGTGCTCACTTCACCG	ref_5038_RC	36	51	51	35	45	37	39	44	31	32
TGAGACAATTTAGCAA	ref_5038_RC	60	63	83	63	65	62	62	46	68	47
TACTGTTCTTTCCGGA	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
CAGACTCGTGGAGGCT	ref_5038_RC	0	0	1	0	2	0	1	0	2	2
CCACTTCCATTTGGCC	ref_5038_RC	19	13	13	9	14	6	7	4	14	12
CGGCGTGGCTTTTGGG	ref_5038_RC	6	10	14	10	8	3	5	8	9	6
ATGGACAGTGACTTAT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
CGCCATAATGGCAGCG	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
CCTCGTTATAACCGGT	ref_5038_RC	19	28	31	25	24	31	36	24	32	23
TGGATTCGATTGTGCC	ref_5038_RC	6	10	3	4	11	2	10	4	7	3
CGCGCCTGCGGGAGTC	ref_5038_RC	26	26	28	39	24	33	23	13	32	19
GCGAAAATCATGGCAA	ref_5038_RC	47	24	58	35	24	42	26	33	39	35
AACGTCCGTAGTTTAC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TTTAATTCGTGTTCGT	ref_5038_RC	34	27	24	22	20	31	24	28	26	32
GCCTTGCCGCTCCTAC	ref_5038_RC	32	61	55	61	58	54	39	43	54	47
GTTTGAGTCAGTTGGG	ref_5038_RC	87	115	128	139	154	121	159	125	143	101
TTCGGTATCTCGTCTA	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TGCTTCTGAGCTTTTC	ref_5038_RC	16	12	22	16	30	15	21	20	17	30
GTGATCAATCGTAGTT	ref_5038_RC	14	16	15	6	14	11	18	9	14	5
AGGCCTTACCTTCGTC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TGGGCTCGTATTAGTA	ref_5038_RC	26	37	45	33	34	37	42	32	36	21
GCGGTATGTATCGCTT	ref_5038_RC	75	66	99	95	70	77	82	72	90	67
CGCCTACCTTGGGCTT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TCGTGGTATGTTTGTC	ref_5038_RC	20	15	16	18	9	17	19	25	16	13
CCCTTCGACAATCTCC	ref_5038_RC	42	33	35	38	52	38	37	38	22	37
TTACTGGTGGACACGG	ref_5038_RC	6	13	17	6	11	10	7	11	22	5
GTTGTGTTTTTAGACT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
ACGCATCCCTTGGGTC	ref_5038_RC	8	11	18	3	11	14	12	7	9	10
AGCGATGGACCCAACA	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TCATGGTGGTGTACCA	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
GTCTCAGATGCCCTCT	ref_5038_RC	76	57	78	68	44	57	72	61	54	43
CGGCGAAGTACTCCTG	ref_5038_RC	26	22	32	34	15	25	21	21	18	25
TGTTCGACTTAGATAC	ref_5038_RC	63	70	73	60	66	66	91	59	69	46
TACATCGGCACTCGTG	ref_5038_RC	24	29	30	19	25	37	35	25	19	27
GATGAACTCGAAGGTC	ref_5038_RC	2	13	8	6	4	12	11	15	7	3
AAATGCCGCTACTATG	ref_5038_RC	2	6	3	4	3	3	4	2	11	3
GAGTAGTTAGCGCCGC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
GGCATTATGGATATCC	ref_5038_RC	36	27	54	42	30	44	44	39	33	45
GCCTCCCGTTCATTGA	ref_5038_RC	85	89	107	119	104	89	88	95	89	88
GTTAAAGTTCAGTCTC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
GAGCTAACACATCGCC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TTCTTATTCGTGGCTA	ref_5038_RC	56	75	95	98	75	83	88	60	92	80
GACCCACATTCTCCAC	ref_5038_RC	92	56	115	90	80	87	82	68	68	66
TAGACTCATGACGGCT	ref_5038_RC	19	15	9	14	13	12	10	9	13	4
GTGATATTCACACAGG	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
GCAGTCTGCGTGTTTC	ref_5038_RC	15	6	15	10	14	7	5	13	12	10
TACTGCCTGTATTCGC	ref_5038_RC	47	47	52	39	54	38	38	34	57	51
CTTATCGTGTACAGTG	ref_5038_RC	10	21	18	11	19	15	14	13	19	8
ACCATTTTTGCTGAGA	ref_5038_RC	14	19	22	18	10	21	12	17	11	15
GCCCCACATTCTCCAC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TCACAGGGATATCTTA	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TCGCCGTTAAAGCATG	ref_5038_RC	37	27	47	35	27	22	34	33	35	32
TGGCAGTTCTAGGCAT	ref_5038_RC	85	77	123	107	89	100	72	88	89	86
TAAAGTGTACTGGATT	ref_5038_RC	60	56	58	54	55	43	75	60	52	55
TATGGTTATTCTGTTC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
GGCACCAAGGCTCGAA	ref_5038_RC	11	11	23	10	6	16	18	10	17	14
TCTCCGGGCCATCCGT	ref_5038_RC	24	30	35	26	19	15	39	21	34	24
ATTCCTACTCCTCATC	ref_5038_RC	48	45	46	42	53	37	46	33	46	30
AAGTTTCTAATTAACT	ref_5038_RC	7	12	3	6	7	5	1	5	18	4
CTTAGTGAGAAGACAT	ref_5038_RC	218	190	294	239	182	221	218	200	216	181
AGGCGTTGACCATTGC	ref_5038_RC	3	3	5	3	6	6	4	7	2	2
GTAACATTTGCGGACA	ref_5038_RC	30	39	23	24	33	14	38	21	39	29
GGCATCTCGTCTTACA	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TTTGGTGGGGGTCCAC	ref_5038_RC	514	434	589	521	394	444	430	446	361	460
ATCTTTCTGCCGAGTG	ref_5038_RC	53	38	58	56	43	51	53	42	54	34
TAATGACCCTCCATAG	ref_5038_RC	21	11	21	23	15	20	28	26	25	15
GGATCTTCTTGGATTT	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
AATCCTACTCCTCATC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
ATGCAACCGGGATTAC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
TCAATCACTATTTAGA	ref_5038_RC	13	7	24	12	22	21	16	21	23	16
TGAAGCAGTTGTCTGC	ref_5038_RC	0	0	0	0	0	0	0	0	0	0
CCAAGGGGGACTGCCT	ref_5038_RC	26	35	34	47	27	26	29	27	40	32
TATGCTCTGCTAACTC	ref_5038_RC	33	45	56	52	33	46	51	39	38	46
GCGCTGAATTGGACGT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TGCACTCCGTGGGAAG	ref_3303_reverse	23	29	23	18	38	14	29	23	33	14
TTTTTCCTCTCTTGTC	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
CAATTGAAACGAGCAG	ref_3303_reverse	12	11	12	18	6	9	14	10	10	18
CCTGTTCTTCCCGAAA	ref_3303_reverse	31	19	39	32	17	29	20	32	33	26
GTTTCGCCGTGGCGTG	ref_3303_reverse	3	10	4	4	6	4	4	3	5	7
CTCATCTTTAATCTCT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
ACTGCGCTTCCTGTAA	ref_3303_reverse	60	48	62	52	53	71	48	42	59	42
TGCTAGATATCTTGAC	ref_3303_reverse	22	34	38	34	35	34	44	45	30	27
GCGGCTGAAGGTGCTT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
CAATTCGTTCATTTTG	ref_3303_reverse	7	15	15	19	18	26	20	17	16	10
TCTCGAATACATTGAG	ref_3303_reverse	53	35	69	55	44	51	53	62	45	50
CGCGCGTCCTTTGGAT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTCTAATGAGGCC	ref_3303_reverse	4	8	9	14	8	4	4	10	13	10
CGATGGGTATGTAACT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
AAGACTGCTACGTTGA	ref_3303_reverse	95	90	123	114	99	89	106	99	92	96
AAGCGCCATTGTTCAC	ref_3303_reverse	54	34	58	56	26	54	34	34	21	38
GAGTTATATCTCCCAG	ref_3303_reverse	60	61	70	73	55	70	53	62	61	61
AGCATGGCTGTACAGG	ref_3303_reverse	83	90	137	120	60	79	84	84	84	110
GGGGTTTGCCCAGGTC	ref_3303_reverse	37	34	50	50	34	54	45	42	45	34
TTGCTCCGATAGCTTT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTATCTACTTACA	ref_3303_reverse	34	39	23	18	32	28	22	22	22	18
TCTTTGGTACGGAGTC	ref_3303_reverse	36	28	46	34	26	22	45	43	28	36
GCACAATCATGTTAGC	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTCGGGCCCACAA	ref_3303_reverse	55	41	59	53	29	43	36	40	34	33
CTCTTCCTGCTAGTAT	ref_3303_reverse	5	6	11	8	4	3	5	8	9	5
GTAGTTTTTTGCCAGA	ref_3303_reverse	31	22	33	26	24	23	44	29	32	27
AGATGTTAGTACATGG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTTCGCTTCGCGT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGGAGCGGCATTG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGAGATGATTGAT	ref_3303_reverse	27	16	30	18	16	19	12	15	21	14
GCTCATGGGCCTGGAG	ref_3303_reverse	94	47	81	72	58	87	60	65	47	73
ACGGCATACTCCATAG	ref_3303_reverse	60	64	96	82	70	67	57	74	72	81
AAGGGGTACTAACGAA	ref_3303_reverse	100	67	141	126	70	88	105	115	77	93
TTCTTATAGCCCATAA	ref_3303_reverse	63	47	89	75	59	67	70	74	73	69
TTTTCAGTCGTCTTTC	ref_3303_reverse	57	39	32	37	36	33	42	33	26	45
CCTAGTTAGGATTTGG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGCATTCAACGAC	ref_3303_reverse	46	35	54	44	45	52	43	42	45	31
TTAGTGTTGAGAGTTC	ref_3303_reverse	3	3	3	4	1	4	6	5	3	0
TCTCAAACAGCTGAAC	ref_3303_reverse	22	18	36	30	21	26	34	31	33	21
GATAAAGGAGTCTCTC	ref_3303_reverse	19	31	35	25	24	24	19	28	25	15
TGCTGCTCGCTCGGCG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTGTTTGATTCAA	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTAGACTTCGTAG	ref_3303_reverse	6	3	13	10	4	4	4	7	5	0
GAAGCGTCTTTTAACG	ref_3303_reverse	57	39	70	49	39	57	62	46	63	43
GTATGTGAGTGGGTGA	ref_3303_reverse	9	17	17	24	17	15	14	13	20	23
TAGAGAACCTCTATCT	ref_3303_reverse	5	4	1	1	6	0	2	1	4	6
GAGCTCTATTGGTTTT	ref_3303_reverse	21	19	17	22	14	26	17	22	23	18
GCTCCTTGAGTGTGTC	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTTTCAGACCAAT	ref_3303_reverse	22	27	33	30	32	21	23	34	21	25
CCGCTGGGTTGTACGG	ref_3303_reverse	5	2	7	3	6	3	3	8	6	5
CGTGTCTGCCTAAAAC	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GTCAAAATCGGTTGTG	ref_3303_reverse	161	136	174	148	146	162	154	132	126	131
CTGTATATTGTTTTAG	ref_3303_reverse	41	35	42	48	40	25	43	27	49	36
GCTCGCACGGAATATT	ref_3303_reverse	30	32	44	29	41	31	27	32	40	33
CGTACCGCTTCTCCGG	ref_3303_reverse	4	1	4	0	2	4	6	3	7	0
GTGCCAAGAGTCCTCC	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
ACGATAGTCGTTTCTT	ref_3303_reverse	11	6	9	5	5	9	10	10	7	11
TAGATAGGATATCGTA	ref_3303_reverse	27	24	53	26	39	27	23	30	35	21
CAATCAACCCATAAAA	ref_3303_reverse	6	5	8	7	5	3	6	5	8	6
TCATAGGTCTTCGGTA	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGCTTTGACATGC	ref_3303_reverse	11	14	23	15	12	15	11	6	20	10
GCTCAAGCTTTACCCA	ref_3303_reverse	41	37	57	54	52	48	48	40	48	52
TCTCTTGTGTTGGGGT	ref_3303_reverse	51	41	51	37	36	37	47	42	35	47
GAGCACCTATTTGGGT	ref_3303_reverse	106	79	128	103	75	89	103	78	80	93
TTAGATGTTAGTACCA	ref_3303_reverse	19	9	17	20	13	20	16	12	17	14
TATCACGTGCAACACG	ref_3303_reverse	63	58	99	73	69	82	55	90	59	73
TAACTTGAGGTTCTTG	ref_3303_reverse	9	3	6	7	8	10	10	7	8	7
GGCACGGGAAGGCCTG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCCTCAGACCTG	ref_3303_reverse	15	11	20	10	14	19	14	19	11	10
GTAGGCAGCACTGGAA	ref_3303_reverse	1	1	3	0	0	3	1	2	1	5
GTAAACTGCGTTTCGG	ref_3303_reverse	0	0	1	1	0	6	0	1	0	0
TCTCACCTCGAACTGG	ref_3303_reverse	73	76	104	97	90	73	80	80	84	81
CCGTTGGGTCTCCGAA	ref_3303_reverse	13	9	12	6	8	11	14	5	17	10
AAATGAGCCAGGTTGG	ref_3303_reverse	52	57	69	77	60	59	47	67	63	47
AGAAAAGTCATTTTGT	ref_3303_reverse	21	14	24	30	14	18	19	21	33	17
AAACACAAGGAGTTCC	ref_3303_reverse	89	51	118	91	51	72	56	57	70	58
CCCCCAACCTATCAAC	ref_3303_reverse	4	6	7	5	8	6	2	2	4	8
CCTATTATCGGTCATG	ref_3303_reverse	29	15	19	25	24	15	27	20	16	23
CCGTTAAATCGTTTTG	ref_3303_reverse	38	27	34	36	26	31	38	33	28	20
CCGTCAGCCGAAAATG	ref_3303_reverse	24	21	44	39	26	32	24	30	32	29
TGTAGCCCGATGGATA	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGTTCGCGTTACA	ref_3303_reverse	14	8	10	16	10	11	15	9	6	9
TTTTTGAATTGCTGCG	ref_3303_reverse	40	29	64	59	37	65	53	49	36	55
GCCTTAGGGACTTCAT	ref_3303_reverse	79	69	92	91	60	68	66	87	68	77
ATCTAGTTACGTCGAT	ref_3303_reverse	6	9	8	10	17	5	7	14	13	5
GACGATGTCGCATTAG	ref_3303_reverse	15	22	33	27	18	26	22	31	26	28
GAAACGTTTATGCGCT	ref_3303_reverse	12	17	11	7	13	13	17	11	9	7
GACCATCGTTCCCAAG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTCCCCGGTGTTA	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAGTATCTCCACC	ref_3303_reverse	45	41	57	38	40	39	42	35	40	42
GTTATTAGTACTAAGA	ref_3303_reverse	17	21	27	13	9	11	14	11	18	8
CCTTTTCTCGGCAAGG	ref_3303_reverse	147	125	179	179	163	155	158	169	177	166
AAAGTTTAGTAGGGTG	ref_3303_reverse	37	32	69	52	42	48	42	47	45	42
GTGATGTACACCGCCT	ref_3303_reverse	86	95	79	105	65	70	85	80	98	90
TGGGTCCAAGCTTCGT	ref_3303_reverse	25	22	43	27	43	32	32	42	38	27
CGTTACTAAGTGTCGA	ref_3303_reverse	36	12	26	20	16	21	10	15	22	20
GGGTGGACTACACCCG	ref_3303_reverse	15	10	12	10	15	11	10	3	7	12
TGGGTGATTATTCACT	ref_3303_reverse	185	184	256	222	167	248	208	144	176	194
TTACCCGCCCCAAGTC	ref_3303_reverse	5	4	1	5	3	5	6	7	7	2
CACGAGGACCTTTTCA	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TCCCACGTCGTTTCTA	ref_3303_reverse	11	24	12	10	35	13	41	16	20	15
AAGGTAACACGCATGC	ref_3303_reverse	35	22	31	19	27	16	23	23	17	23
CCTCAATACGATCGTG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
ACCACACACCGACAAT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTCGCGGTATTCC	ref_3303_reverse	3	5	6	2	6	5	1	6	4	1
TTATTTACTTTCAGAG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTGTGCCTTAAGC	ref_3303_reverse	132	98	111	114	103	113	125	120	91	98
CAAGGCGGTTGGGTTG	ref_3303_reverse	53	35	65	58	56	39	41	43	54	38
TTTTTGGGCTTGGCGG	ref_3303_reverse	23	16	26	29	24	13	22	21	13	22
ATGTCCGTTCACGGTA	ref_3303_reverse	80	78	112	93	80	112	60	102	99	88
ATCCTCGAGATGCTCA	ref_3303_reverse	17	10	8	20	12	16	9	12	8	5
TCCCTGAGGGTTATCG	ref_3303_reverse	7	11	11	14	15	12	5	12	11	7
GGCCGGCCGTTGGTTG	ref_3303_reverse	9	9	5	10	16	6	9	8	20	4
TAAGGACTGCCCTTAA	ref_3303_reverse	60	56	74	67	44	38	39	52	65	50
CAAGTTTCTGTATCTA	ref_3303_reverse	38	23	73	40	24	54	32	45	35	38
TTATGTGCCAGTATCT	ref_3303_reverse	11	6	10	5	11	9	10	6	7	12
TGTTGGTTTCGATTGT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
ACAGTCGAATAGCCGA	ref_3303_reverse	7	3	14	11	11	10	7	2	10	8
CGAGTAATAGAAGGCA	ref_3303_reverse	17	18	27	19	13	22	20	21	15	12
CCTGCTCGGGTGGTTA	ref_3303_reverse	1	5	5	1	7	1	4	3	5	0
TCACATAGCTACACCT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGGACGGTGGATC	ref_3303_reverse	63	56	76	82	52	58	64	58	56	60
AAATCTCACATCCACG	ref_3303_reverse	18	29	30	35	19	23	25	25	19	32
CGGGTTGGCTTGGTCC	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTCGTAGTTTGCC	ref_3303_reverse	55	39	54	46	47	24	39	38	38	31
GCCCGCGCCATAGTTT	ref_3303_reverse	13	15	7	10	10	11	12	12	12	8
GAAAGACCAAGACTGA	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
CGCCATGCTGACTTGT	ref_3303_reverse	11	11	5	8	7	11	7	12	9	8
AAAGCCTACATGCCTG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
GGAGAGGGAGAGAGTG	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TTCGATGGAAACAAGG	ref_3303_reverse	81	80	100	81	80	67	68	81	64	67
CAAGCCAGGAATTAGA	ref_3303_reverse	48	64	78	58	83	56	74	62	90	43
CAACCCATAGCGCTAT	ref_3303_reverse	0	0	0	0	0	0	0	0	0	0
TATCCCGACAATATTT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
AATCATCATTCATTCG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CACCCTCCTTAACCCC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TACTCATGCGAACCTA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CGAAGGGTGAAAATGG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATCACTATCGCTGCCG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTCTCACCGTTACAAC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ACGTTAGGTTACGACA	ref_3685_RC	37	48	43	27	30	39	43	39	41	41
ATCATCATATTTAAAT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CCGTTATAGGGGACAA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTGTATCGTTAC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
AGTACTGGATTGTCTT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTTAGTAGTTTGAATA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ACCGTCCTATTTTATT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GGAACATGCTACCGTT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CTTTGTTAGAAACTTT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TCCAAGATCTGTCCCG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CGAAGTGGGTCTACTA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGTTTTCGCCTT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GCCGGGAGCCTGTTGT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GAACCATTTTCAGCTG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TCGCTCGTGCGGTAGA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CCTCGTTAATTTCTTT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
AGTGCATACGGAGATT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTAAAAACTACGTGTA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
AACGTATATTCGGTTC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CTCTTCGCAAGATCTA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GATCTTCCCTGTGAGC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ACGAGTGTGGCAGTGT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTCATGTAAGGG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTAACCTGATTCTACG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CACATTCGTATTGGGA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATGGTAGTAGCGGAAG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTTTCAAGGAAACGCG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTCCTGTACGTAGATG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TCGGCGCGCAACATTT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CGTTCGTCCGTTTATT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
AACGATCGTGGGAACG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATTACTAACTGGTAGC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CCCCCATCTATCGTCG	ref_3685_RC	1	6	1	3	5	1	4	0	8	0
AATATTTCCAGTTAGC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CATTTATGTATTAATG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TATTGACTACGTTATG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GAGTCCGCACCGGGAT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTATGATTAACTCTAT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CCGGGTATCTAGTGGG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TACGCCCAATGGACTA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CAAATGCAGGGTTTCA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
AAAAGTAAGGCGGTCT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TCATGATCACCCTTTG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATCAAGCTATCTAATT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GCATGCTAGCATACGC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CCTGTTTTGTGTCTCA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CGTGACACAACTCTGT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TCATCCCTATTGTACC	ref_3685_RC	8	13	4	5	20	8	15	0	21	4
TGTATTCGTTTAACAC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GCCGGTAGCCTGTTGT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TATGCGTTGAATGGTA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CACAGTATTTGAGTCT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATTAACTTTCCCTAGA	ref_3685_RC	10	7	12	5	5	12	4	6	7	8
GCATTGGAGCTGGGCA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
TTCATGCTACGTGTCC	ref_3685_RC	13	14	6	4	16	8	16	19	9	15
CACGCCTGTATCCTTA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GAGTAACGATTGCACG	ref_3685_RC	3	5	6	4	3	3	11	5	3	5
GAAATCCCTGTCCATC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
AGGATTAGTGTTTTAC	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATAGGTTATTTTAATT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ATCATGCTATCTAATT	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GCTTTTGGCAGTTTAG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ACACTCAATCCGCTGA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
ACCGGCGTGGGTTTGA	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CATCCCCTACGATCAG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
CGGGTCGGAACTGGTG	ref_3685_RC	0	0	0	0	0	0	0	0	0	0
GGTCAATTTCATCAGT	ref_5268_upstream	86	127	87	97	122	79	128	76	131	81
GACATGCCTCGTTGCG	ref_5268_upstream	55	62	71	60	59	58	63	65	68	49
GGTTCGTCTTCAGGCC	alt_5268_upstream	256	318	333	273	288	251	318	232	308	248
TTTCCTCTCGGTTTTT	ref_5268_upstream	18	22	18	16	19	21	28	14	13	20
GGTCTCCCCCACGAGG	ref_5268_upstream	25	21	24	21	19	19	28	36	25	18
GGATAGTTGGACTCCG	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTAATACGGATGA	ref_5268_upstream	16	18	17	16	22	13	15	13	10	15
TCAGGTTCTTAGGTGC	ref_5268_upstream	15	15	19	18	19	15	18	10	17	11
GAGTGTTTTAGCACAA	ref_5268_upstream	4	15	5	9	13	4	5	12	6	3
CTTCCTTGTACAGCAT	ref_5268_upstream	64	72	70	57	67	56	63	56	74	57
AGTAAGTCTTGTTTGG	ref_5268_upstream	67	108	101	89	75	86	104	69	111	79
TGAGATTTTCAACCTG	ref_5268_upstream	25	30	31	20	38	22	34	17	29	19
AGACAGTACCAGGGGT	ref_5268_upstream	25	28	34	30	30	22	36	22	39	23
ACTCGGGTGCGCTGCG	ref_5268_upstream	53	81	83	66	60	84	70	54	67	66
CACGCAACGTGCGTGG	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTCCAATTAGTTC	ref_5268_upstream	53	68	72	42	56	51	75	46	53	54
TGGCTTCGATGTCCAC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGATTGGTATATC	ref_5268_upstream	24	19	19	20	25	11	23	17	20	13
GGGACCCAGGGGTACC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TGTTATATTTTTCTGG	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTCATGGGCTCT	ref_5268_upstream	73	81	109	67	91	85	112	81	105	80
CGTTCAGACCCAGCAC	ref_5268_upstream	20	16	26	18	31	15	17	25	22	19
GGTCATTCCTACTATC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGCTGGAGCGAC	ref_5268_upstream	41	88	57	54	71	41	51	61	64	54
TCTTTTGGCCCTCCTG	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTATGCTTTATTT	ref_5268_upstream	25	24	23	20	28	15	31	23	36	27
TGCGGCTTAGGCCTTA	ref_5268_upstream	2	10	2	1	7	2	12	3	7	0
TTGAGTCAGTGCTTCG	ref_5268_upstream	23	29	33	32	31	28	40	22	29	23
ATTTCGCATTTTGGAC	ref_5268_upstream	116	150	90	96	142	92	135	73	134	91
GAAGCGCTCTTAATCG	ref_5268_upstream	51	57	82	56	56	46	66	41	64	50
ATGCATCCTACCCGTA	ref_5268_upstream	27	71	44	37	61	36	56	31	65	38
TTTAGTAATCCTCTCT	ref_5268_upstream	3	6	7	6	7	6	6	2	10	6
TGTAACTAGGCCTGTT	ref_5268_upstream	64	81	64	74	75	71	102	70	97	74
CGTAGTTTGCGACTGT	ref_5268_upstream	1	1	1	3	4	2	4	4	2	4
GCGGGGATTGGCCCAC	ref_5268_upstream	18	28	27	19	15	21	29	22	17	20
AAGGTCCGGTGCGTAT	ref_5268_upstream	8	13	16	8	8	7	11	9	19	8
GCTCTCTGTTACGTCC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
AACTATTGCTGAAAAA	ref_5268_upstream	34	36	38	29	40	28	34	45	40	27
ACATGATACGGTGTTT	ref_5268_upstream	75	67	92	90	51	68	84	86	83	60
GGTCACGTTCCCCTCG	ref_5268_upstream	18	28	18	16	23	13	33	16	43	12
TGTCCCAGACCACTGG	ref_5268_upstream	11	22	13	20	20	14	16	17	16	20
AGAAACATTCAGTGGT	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TTCACCTGCCCTACGA	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGTCTTGTCCGCC	ref_5268_upstream	42	53	61	55	60	48	62	37	59	40
ATTTTGGATTTAATAC	ref_5268_upstream	135	198	183	161	211	144	200	155	200	143
TTCGCACCAACACTAA	ref_5268_upstream	30	19	28	17	29	21	22	21	32	14
TCGTGGACCTGTTTGG	ref_5268_upstream	33	37	62	58	59	47	36	44	58	48
AGCCTTCGCAAGCAGG	ref_5268_upstream	62	71	44	56	94	38	56	54	75	51
ACCTAGGTAATTACAC	ref_5268_upstream	50	95	82	52	66	54	98	55	95	53
CAGGTCGGACCGGAAT	ref_5268_upstream	10	7	8	5	17	12	10	10	17	7
TGATTAATTTTTGCTA	ref_5268_upstream	15	18	20	10	17	17	15	17	18	16
GCTAGGCAGTGGCTCG	ref_5268_upstream	29	18	26	21	15	12	29	25	32	14
CCAGGGCATTCACTGG	ref_5268_upstream	25	32	27	19	41	21	22	14	29	21
ATTCTCAAACTCTTTG	ref_5268_upstream	24	33	45	36	30	23	26	36	36	29
CGCGCAGAGTGCAATA	ref_5268_upstream	107	116	107	87	108	97	117	94	114	87
TCGTTTTTGTTACCTG	ref_5268_upstream	50	84	50	42	99	58	80	50	98	40
GATCAATTTACTCTCG	ref_5268_upstream	7	16	6	14	10	15	15	10	12	6
ATCAGGCGCTTATGCT	ref_5268_upstream	5	17	10	9	14	10	19	8	18	6
TTACCTCAGAGTTGGG	ref_5268_upstream	40	49	61	28	41	36	52	36	56	34
TAGTCTATAGCATCAA	ref_5268_upstream	67	75	69	66	65	62	72	62	102	59
ATCGCCTGATTTATCT	ref_5268_upstream	20	19	25	19	15	8	24	14	24	18
CATGTCTGTTTATTGC	ref_5268_upstream	55	58	61	58	52	58	64	73	63	54
TCGGACTCTATCTTGG	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TAGATATTTGTTTTTC	ref_5268_upstream	143	118	163	142	124	131	133	133	141	114
TAGCAAATGTATAGTG	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TCGTAACTAAGTAATT	ref_5268_upstream	0	0	1	3	0	3	3	1	1	0
CTTTGCGCGCCCTTGT	ref_5268_upstream	47	84	89	75	88	48	97	50	75	55
CTGTCCCATTCTCCTC	ref_5268_upstream	91	101	109	80	112	74	104	96	91	77
GCTCAAAAGATCAGCA	ref_5268_upstream	20	27	22	25	38	17	20	12	25	23
TTCATAAGTAACTCAG	ref_5268_upstream	12	10	19	16	23	9	18	20	23	16
TTATCTCGTAGGTTCC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTGCCTAAGTCGC	ref_5268_upstream	39	44	31	38	44	48	54	42	51	35
TCCAATTATTTGTGTC	ref_5268_upstream	84	80	113	62	108	65	76	77	79	81
GTAGGCTAGAATATGA	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
GGAACGCGCTGAGATT	ref_5268_upstream	18	17	23	23	8	17	12	18	21	11
TCCAATAACGCCTGCC	ref_5268_upstream	52	50	41	41	43	29	61	29	53	33
CCTGTCGCTGCTGCTC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGAATATTGGGCC	ref_5268_upstream	69	56	79	68	86	64	74	75	81	62
TTGTGTGAGTTAATAC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTCTCAATCGGGC	ref_5268_upstream	28	36	23	31	27	14	28	21	35	12
GAGGGAGCAGATCCCT	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TTTCACTTATCTTCGA	ref_5268_upstream	16	17	24	13	22	13	18	6	18	19
CTTGAATTTTAATTAA	ref_5268_upstream	38	27	39	36	36	33	45	39	41	30
TCTGTTGCAAATTATG	ref_5268_upstream	9	23	12	14	30	11	25	8	24	4
GGTCGTACGACAGCTA	ref_5268_upstream	47	71	85	64	92	62	73	72	91	82
CGCACTAAGGGCGGGG	ref_5268_upstream	1	1	3	2	2	2	2	2	4	4
TACCGTCTGAAGTTTG	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
CCGGGCTCCGTCAATT	ref_5268_upstream	48	61	56	60	57	41	65	44	56	32
TCGCATATTTATCTGG	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TAGGAGGTTGGTCTTT	ref_5268_upstream	62	49	49	49	59	55	49	50	53	35
GCTATCATAGACTCTA	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATTTAATTTGTT	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
TCAAAGCGGGTTTTTA	ref_5268_upstream	0	2	0	0	1	0	0	2	0	2
ATGAGAATTATTTTTC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
CATTCGTTCTCATGCT	ref_5268_upstream	19	29	20	25	34	10	30	25	40	21
TCGTTAGTGCTGCATC	ref_5268_upstream	49	56	49	45	55	26	47	50	67	35
GTTAGAATACTGTCTC	ref_5268_upstream	0	0	1	0	1	1	0	0	0	0
TCAAGCTTTATTGGGT	ref_5268_upstream	46	48	65	40	56	54	63	31	57	38
ATTTGCCTCATGTCGC	ref_5268_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTCAAGGCGTATC	ref_5268_upstream	8	7	6	5	15	8	12	3	8	1
TAGAAAACCCTTTCTA	ref_5268_upstream	44	34	41	32	42	37	36	40	41	38
GGTATCGTACAAGCTC	ref_5806_new	17	17	13	12	13	12	18	15	14	15
TTGTGCATGACCGGTC	ref_5806_new	43	39	34	25	53	26	32	29	57	20
ATCGGGGCTCTGGCCC	ref_5806_new	6	12	16	5	16	9	10	6	4	9
CCTACGATAGCGCGGA	ref_5806_new	24	24	30	19	18	18	21	25	29	17
TTCGGTTCGGATAACT	ref_5806_new	9	9	4	4	9	10	9	8	8	9
GTTCGTGATGGTTGAC	ref_5806_new	100	151	134	99	126	119	127	94	156	97
CTTGTTCTTATTTGGG	ref_5806_new	169	187	176	153	158	132	170	149	203	105
AGTGCAGTTGTCACCT	alt_5806_new	0	0	0	0	0	0	0	0	0	0
AGACACCAATTCTGCT	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GGTTACCCTCTGTCCC	ref_5806_new	21	13	19	14	21	20	22	15	18	14
ACAAGCCTTGTTCAGG	ref_5806_new	53	63	53	46	61	42	69	35	68	43
CCCCGGGTTTTACCCC	ref_5806_new	0	0	0	0	0	0	0	0	0	0
ACACGGATCCCTCTAG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GTACCGGTAACGTGTT	alt_5806_new	0	0	0	0	0	0	0	0	0	0
AGAGGCAGCTTCACAG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GACCAGGGTCGTTATG	ref_5806_new	4	5	4	2	7	1	4	3	1	1
CTTGTATCTTTATAAT	ref_5806_new	35	30	30	13	38	33	37	26	28	24
AAATATGTATACACTC	ref_5806_new	9	5	12	3	3	3	14	2	11	6
TTTGCGATCTCGGATC	ref_5806_new	123	177	185	149	203	120	163	139	206	118
TCGATATTGGCACCAT	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GTTTACATTGCTAGGT	ref_5806_new	0	0	0	0	0	0	0	0	0	0
TTGAAGTTCGACAGCA	ref_5806_new	0	0	0	0	0	0	0	0	0	0
CCTGGACTTGGATCGT	ref_5806_new	7	14	10	10	12	9	18	15	20	10
ACGTCAGGGCTGCTTG	ref_5806_new	21	11	21	6	17	14	18	17	27	9
TCTATTTTTCCTTTGT	ref_5806_new	20	37	15	18	34	16	30	20	23	22
GTTCCAGATCTTTCCA	ref_5806_new	17	14	16	19	21	17	21	14	30	11
AAGTCTGTTCGACCGG	ref_5806_new	9	37	8	17	39	12	30	11	39	6
TGCTCGTGATCTAATG	ref_5806_new	3	2	6	4	5	3	5	2	3	1
TGAACCCGCTCAGTTG	ref_5806_new	31	40	27	26	50	25	46	32	39	18
TCTGTAATCACATCGG	ref_5806_new	215	261	258	235	251	184	242	188	257	171
GTTAAGTTGCGTCACG	ref_5806_new	26	26	25	22	22	12	27	15	24	19
CCCCGCGGTAGGTTTG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GTTTAAAGTACCGCGG	ref_5806_new	6	8	8	4	5	7	9	6	10	6
CGTGCCTGTCGGATGG	alt_5806_new	24	66	31	30	50	29	58	23	72	22
CCTATTGTATTCGCTC	ref_5806_new	116	207	158	116	194	134	176	103	226	97
CAGGTAATATGTGCTC	ref_5806_new	0	0	0	0	0	0	0	0	0	0
ACATATGGCCCTAAGA	ref_5806_new	60	69	91	66	104	53	75	54	98	56
TGTAATCTTGCTTCTA	ref_5806_new	0	0	0	0	0	0	0	0	0	0
TTTCAACAAATGTCAA	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GAGTGAACTTTCTAGT	ref_5806_new	90	92	84	74	74	65	73	67	103	58
TAGGGCAGAATTCCCT	ref_5806_new	0	0	0	0	0	0	0	0	0	0
AATTTACCTGCTGGGG	ref_5806_new	34	77	48	40	64	40	81	43	80	34
GAGTGATGCAAGGTCT	ref_5806_new	27	29	44	39	33	21	24	32	39	32
ATCGACCGTACGTAGT	ref_5806_new	21	39	32	19	44	19	43	24	34	20
CCCTAGCAGATTTTAT	ref_5806_new	25	40	25	21	33	21	35	21	44	18
CCCGAAGTAGACCTGG	ref_5806_new	8	8	5	5	7	1	3	3	9	2
GTTAATCGCGTGTTTC	ref_5806_new	0	0	0	0	0	0	0	0	0	0
TCCAACTCTACAAATG	ref_5806_new	5	8	1	11	6	7	8	10	13	5
TGTACGTCTCCTGCTA	ref_5806_new	2	4	1	1	5	3	4	4	5	2
GGGACTTGCATTCTCC	ref_5806_new	0	0	0	0	0	0	0	0	0	0
AGCCCAGGCGATCCAC	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GGCACTTAATTCCCTG	ref_5806_new	5	18	1	3	8	3	11	4	4	2
ATGTATTCAGCCCATA	ref_5806_new	16	15	21	7	9	5	14	7	10	6
CACAAGCTTTAAGTTG	ref_5806_new	20	30	26	25	30	27	39	27	31	31
TGGTTTATAGGAATGC	ref_5806_new	38	40	48	31	57	39	36	39	42	43
TGCTCCCAAAACGGGG	ref_5806_new	12	30	14	6	44	11	34	3	50	4
TCCTCCACTTACCGAG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GCCATAGTCCTGTAAG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
TCCGCTTCATGGACTG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GAAATTTTGCTCGATA	ref_5806_new	22	25	30	19	25	15	15	14	23	8
ACTTAGTATCCGAATT	ref_5806_new	18	29	16	14	29	19	31	19	33	12
ACACCGTCACAATTAG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
ACGGTTTAAGAAATGT	ref_5806_new	3	3	6	4	5	4	5	4	3	1
ACTATGGTGTTATACT	ref_5806_new	16	21	16	18	14	4	32	17	15	14
GGACCTGCATCTACAA	ref_5806_new	0	3	2	8	2	1	0	2	5	0
GGATTTCTTTTGGTTG	ref_5806_new	100	130	132	113	120	79	141	91	121	99
CTTTCCCCCTTCTATT	ref_5806_new	13	4	18	5	8	5	12	10	5	3
AGTGGCTGTTAGAGGC	ref_5806_new	31	41	40	23	47	41	45	10	33	30
GCAGTTTTTGAGACCG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
TCAGTAAACCCTTATA	ref_5806_new	22	28	22	24	21	25	39	20	26	17
CCTGTTTCGCTACTCG	ref_5806_new	34	69	40	39	83	41	85	23	89	26
TCTGGTTGGGGTCCTC	ref_5806_new	5	4	2	5	3	6	4	1	5	0
CTGTGTGATACACAGT	ref_5806_new	0	8	2	3	6	5	6	3	2	2
TATTATACTTTTCTCT	ref_5806_new	0	0	0	0	0	0	0	0	0	0
TGCTTGGCAGCAGCTT	ref_5806_new	12	7	11	9	4	9	11	5	19	2
CTCAATTCGTGGGAAA	ref_5806_new	60	87	81	67	84	74	97	61	98	48
TTACTGCTAGAACAGT	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GGATCAGTTCGTTTAG	ref_5806_new	46	46	36	40	60	36	74	38	51	40
ATGTGCTATAAATTCC	ref_5806_new	0	0	0	0	0	0	0	0	0	0
TATATTGCGATAACCT	ref_5806_new	51	78	85	88	88	52	66	72	74	50
TCCCTCGTCAGCAAGC	ref_5806_new	22	22	32	22	13	16	24	17	21	16
ATGGTAGTGTCGGTAG	ref_5806_new	58	57	55	46	49	43	63	44	81	42
GGCGGTAATCGTACGC	ref_5806_new	0	9	6	4	3	2	2	4	2	1
CGCTGAAGTATCCAGA	ref_5806_new	56	48	48	40	66	40	69	25	63	50
ACTACTGAGCACTAGG	ref_5806_new	18	37	48	21	25	22	27	17	30	13
CTCTTATAGGAAGGCA	ref_5806_new	0	0	0	0	0	0	0	0	0	0
CATCCGGATTCCCGGG	ref_5806_new	45	56	53	50	70	55	73	54	75	34
CAAATTGTTGTGTGGG	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GGCTAAGTAATTTGGG	ref_5806_new	5	10	14	3	8	6	9	10	17	7
TCATATATCTTCCTAA	ref_5806_new	18	28	25	19	19	12	22	14	30	13
GAGTTGAGAATCGTTA	ref_5806_new	1	5	2	2	6	3	4	1	3	6
AGTAGTTGATTAAGCT	ref_5806_new	7	20	12	11	13	13	7	5	10	9
CCCTGAAATTTTCGAA	ref_5806_new	82	118	110	91	122	79	117	76	124	55
ATTACGAGTCTCCCGC	ref_5806_new	0	0	0	0	0	0	0	0	0	0
GCTATAGCTTGCGCAT	ref_5806_new	16	29	19	18	29	19	26	11	19	10
GTGGCGGCTTGCAGTC	ref_5806_new	8	10	7	14	13	8	19	6	14	7
ATGGTACTTAGAATTG	ref_5806_new	8	5	8	6	9	11	7	7	8	5
GACTGGCACTAATACC	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
CTCGATTCTCGAATAT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTAAGTTTCCTG	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TATCGGATGTCGAAGG	alt_2295_reverse	35	53	42	35	55	29	47	40	47	37
CCACTCTTAATATTCC	alt_2295_reverse	19	56	20	25	83	19	49	14	81	12
CCACGCCTCGATCAGT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
GATTCATTCTCGCTTG	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
AACTGGTTTTTGGGGT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
CTCAACCCATAATCTG	alt_2295_reverse	18	62	23	25	57	24	45	17	74	19
ATAATCATGGGGGCCC	alt_2295_reverse	44	53	57	53	58	33	68	41	55	28
CACCAGTTTGGTTCCA	alt_2295_reverse	7	8	2	5	10	6	12	5	9	5
TGTAACGAAGGGCCGG	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TCACCACGGTACTCTT	alt_2295_reverse	17	16	23	8	14	14	19	17	21	13
CTGGGTATACTCGGGG	alt_2295_reverse	9	13	15	14	16	9	20	8	21	10
TGCCTGCTTAATCTCG	alt_2295_reverse	67	113	110	108	149	81	132	84	145	83
AGAAGTCGCATACCTA	alt_2295_reverse	27	40	19	22	45	29	43	23	42	17
TTGTACTATTTCGCTA	alt_2295_reverse	24	25	15	12	33	19	26	13	38	19
TACTCGTGGTTACTCC	alt_2295_reverse	14	26	8	12	15	11	17	11	27	11
CGGTCTTCGCGCAGAA	alt_2295_reverse	2	5	7	7	18	2	9	5	7	6
TAAAGAAGCCCCTATC	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
CAATTGTTAGCACACT	alt_2295_reverse	6	24	7	7	22	5	20	7	23	7
TTATGAGAAGCGTTGT	alt_2295_reverse	32	42	34	55	57	39	43	25	57	39
CTTACATGCTTTTTTC	alt_2295_reverse	72	76	84	58	79	58	114	52	98	56
CAATCGTTGTCTCGAA	alt_2295_reverse	16	18	19	8	22	14	26	19	25	17
ATTCATTTCACTTTCA	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGGGCCGCGACAT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCTTCTAGTTCTA	alt_2295_reverse	25	56	26	19	60	27	49	20	69	20
AAATTTCAACCGTTAA	alt_2295_reverse	28	66	55	34	59	19	42	28	48	38
ACGCATGATTAGTCTG	alt_2295_reverse	5	5	7	9	10	7	8	5	3	2
TGTCGGTATCCTTTTT	alt_2295_reverse	82	70	89	65	93	84	81	82	76	60
GGGCTGACGTTATCGG	alt_2295_reverse	152	200	163	164	187	138	210	132	193	108
CACAAGGTTTGTGCAA	alt_2295_reverse	10	24	10	5	15	11	18	11	19	4
GCTGTGAGATTAAGTA	alt_2295_reverse	21	10	22	18	14	23	29	22	26	10
ACCTGTAACTGCCAGA	alt_2295_reverse	4	11	5	11	11	3	5	6	14	3
ACTTGGACGACTTTTG	alt_2295_reverse	24	41	22	14	31	14	30	16	30	22
ATGTGTCTTAATCGTT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAGCGGAATTATT	alt_2295_reverse	20	41	33	16	45	19	56	23	40	20
TTACGGGCTATCAACA	alt_2295_reverse	124	202	165	122	189	116	170	95	171	104
TCGAAGCTTTATCCGT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
AAAAGGTGCACCTATA	alt_2295_reverse	16	26	20	11	27	22	23	16	31	15
CGATTGGTATTACTTC	alt_2295_reverse	55	82	52	54	92	48	89	40	55	53
ATGACATCCCTACCAC	alt_2295_reverse	6	6	8	7	17	5	11	7	12	6
ATGTCAGGGTCAGCAC	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGCCTTGATCATA	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TAATGAACGGACATGT	alt_2295_reverse	2	9	2	6	11	7	7	4	11	10
TGCCACCTTATAGGAG	alt_2295_reverse	24	34	30	26	27	18	20	17	35	17
ATGGATTGCTAGCAGA	alt_2295_reverse	23	20	14	24	13	15	15	11	19	16
TTTGCCGAGGTTTGTA	alt_2295_reverse	30	75	37	37	60	27	53	41	72	30
TCACATCGGAGGCAAG	alt_2295_reverse	25	27	21	14	19	18	43	24	38	19
GGGCGTAGTACACTTT	alt_2295_reverse	1	18	13	6	29	4	26	6	33	7
CAATTGATGCCACTCG	alt_2295_reverse	23	49	37	35	51	27	44	23	31	19
GAGACGTTTTCTTTGG	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
GGATATATTCCTTCCA	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TCTTACTGTTGTTTGG	alt_2295_reverse	8	14	6	18	26	14	28	4	15	10
TATATTTTCCGGATTG	alt_2295_reverse	64	72	85	61	75	65	70	60	88	52
GTGCAATAAGGGCGAG	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
AAGTAATCCACCCTGT	alt_2295_reverse	7	7	5	5	17	8	5	8	7	6
TTGTAGCCTCTGACAT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TCGTACATTTGTTTCC	alt_2295_reverse	88	117	78	84	112	81	126	72	146	79
GAGATATCGTCCTGAG	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
CTTATGATGGTTGTGG	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTGGGCAGAAAT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGTCTTTTTATTA	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTTCGCCGGTTCC	alt_2295_reverse	16	34	31	25	37	20	41	24	38	26
GATAAGTAATAGTCAT	alt_2295_reverse	29	28	19	35	29	24	30	17	38	14
GTATTAAACTGCTCTA	alt_2295_reverse	5	9	13	6	15	6	3	10	10	11
CTCACTATCGGGTCCC	alt_2295_reverse	12	14	8	10	17	7	12	7	15	6
AAACGTACCGCTGTTT	alt_2295_reverse	4	4	2	6	5	0	2	1	4	3
CGCTGCGTTATGTAGT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCTGAATTAAATG	alt_2295_reverse	7	13	9	10	16	7	11	5	17	7
TCTGGTTCGTAGCGCG	alt_2295_reverse	6	17	7	7	6	6	6	5	10	3
ACATGACTGGAGGGCG	alt_2295_reverse	21	23	19	21	40	21	31	17	22	23
CCCCTTACTGGCATCA	alt_2295_reverse	15	19	20	16	21	15	21	12	30	6
AGCGTTCTACATTCAT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
GCTCAATACACTGCTC	alt_2295_reverse	4	8	6	2	9	0	7	1	18	0
GATTAGTATATGTTTT	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAGTTGTTATTTG	alt_2295_reverse	2	5	5	6	3	3	10	4	5	1
GCCCTGACCTGAATTA	alt_2295_reverse	28	31	23	30	51	18	37	24	51	35
GGTACCAAACTGAGCA	alt_2295_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGTTCGTACATGC	alt_2295_reverse	7	11	22	16	23	16	40	15	17	19
TCGGGCCTTCACGTTC	alt_2295_reverse	339	462	413	342	467	301	511	347	462	323
TCCCTTGGGAAATGCC	ref_5785_new	28	42	13	23	49	9	46	16	42	19
AACGAGCGCTACAGCC	ref_5785_new	9	36	6	8	55	6	39	8	35	6
CTGGGTATGAATATGC	ref_5785_new	14	44	13	18	46	16	62	12	52	16
GCAATATAGTCTAGAA	ref_5785_new	0	0	0	0	0	0	0	0	0	0
AAGCGTATTAATCAGG	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GGATATTTGATCATTT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
TGGGTCCGCTATTGCT	ref_5785_new	9	34	17	12	40	6	22	5	34	5
CGGAGTTCTTGATGTC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GTATGTTTGCGACAAT	ref_5785_new	11	39	25	17	66	15	58	13	48	16
CCTGTTGTTTCGAATT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GGGGTGCAAAGTTTGC	ref_5785_new	1	2	0	1	5	1	4	0	4	0
TTAGACACTAGGTATT	ref_5785_new	18	79	26	31	79	20	95	19	107	17
TAACCCTGGTAAAACC	ref_5785_new	7	39	17	13	35	14	39	12	45	6
CCGGGGAACACTGGGA	ref_5785_new	0	0	0	0	0	0	0	0	0	0
ATGAACCACAAACTTG	ref_5785_new	24	84	26	23	65	21	103	20	82	26
CCCGATACAAATATTT	ref_5785_new	9	34	3	7	16	5	29	7	39	7
CTTGGCTGGATTACCT	alt_5785_new	74	186	48	46	178	51	201	44	234	57
AATGGCAGCGCTACCC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
TGCTAGGTCTGTTACA	ref_5785_new	1	17	9	4	17	8	23	0	29	4
TGATTTTTTCCTCTCC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
CTCGAACTCTATCTAA	ref_5785_new	5	20	3	2	24	6	12	4	20	4
TTGCGTATCGTCCTAT	ref_5785_new	12	38	12	7	42	8	45	7	26	5
TTTATCTTTTTGTTGC	ref_5785_new	106	252	119	96	258	119	275	109	290	86
TCTTGATCATGCTCCC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GCTGTTAACTTCCCTA	ref_5785_new	9	25	9	4	35	10	33	11	39	9
TCGTTCGTACCTTCCG	alt_5785_new	20	66	16	18	66	16	66	20	52	21
TTCGGGTAAGCATTAG	ref_5785_new	0	0	0	0	0	0	0	0	0	0
AAGCGGTCCTGTTACC	ref_5785_new	7	42	19	6	50	11	43	4	48	8
TTTAAGAAGTTCAGCG	ref_5785_new	0	0	0	0	0	0	0	0	0	0
CAGGTTTGCAGAGTAA	ref_5785_new	16	27	17	7	32	6	32	5	27	12
AGGTTGTGAATAGCAG	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GCGTGCTTCGTACAAA	ref_5785_new	52	141	68	44	104	29	134	41	148	33
TTTTGATATCTATGTG	ref_5785_new	1	1	2	2	1	1	2	0	2	1
TACGACCGTACACGAT	ref_5785_new	47	106	34	48	128	30	133	30	130	33
GACAAAGGCTTCTAGC	ref_5785_new	3	24	4	4	27	2	27	5	31	2
GTGGGGTGTACAAGTT	ref_5785_new	22	81	35	32	82	40	77	23	74	18
AGACAGGCGACTCATA	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GCATTGAAGATACTTC	ref_5785_new	21	48	13	13	54	18	50	15	43	12
TTCGCTGTCTTTGTAT	ref_5785_new	2	15	3	2	9	2	15	4	12	1
TCGTATCTGGCGTGTC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
AGTTTTCGGATGAACA	ref_5785_new	35	118	45	49	115	32	137	34	122	29
CATATAATTGGGCAGA	ref_5785_new	0	0	0	0	0	0	0	0	0	0
CATGACCGGCCATACT	ref_5785_new	10	21	11	4	16	10	18	7	28	4
CAAACTTCTAGGGACA	ref_5785_new	19	51	27	24	77	13	61	21	63	12
TGTTTTCGGCTATGTT	ref_5785_new	9	43	13	13	46	9	41	11	34	10
GTTACTTATTACATCC	ref_5785_new	19	85	31	20	61	23	50	25	67	26
GTTTCGTCTTTTACAG	ref_5785_new	0	0	0	0	0	0	0	0	0	0
TTCTACCTTTACGACC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
TTGATCACTGCCCAAT	ref_5785_new	46	104	46	23	115	34	112	29	110	34
TCTAATTTCGCTAAAC	ref_5785_new	5	17	6	5	24	6	18	7	23	4
ATGATCCTTAATCTTT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GTGCGTTACGTTTATT	ref_5785_new	6	17	8	8	14	10	19	2	20	8
GTCTTGAATGATAAGC	ref_5785_new	0	2	1	1	5	1	1	3	1	2
TTAATCGTTCAATCCG	ref_5785_new	12	33	14	9	30	9	25	5	37	10
TATTTTCGGGATTGGG	ref_5785_new	3	6	8	1	4	4	9	4	4	2
CAAACTATCCAATTTA	ref_5785_new	6	27	12	14	18	7	16	9	24	5
CAATGATTGACTGAAA	ref_5785_new	24	66	27	33	63	27	86	21	71	15
TGGGTACACTGTTGTG	alt_5785_new	14	52	7	13	56	8	40	4	59	2
GCGACACGCAGAGCAT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GCAACCTCAAATGGCG	ref_5785_new	5	25	10	14	32	7	35	8	31	6
CATGAACCCCCTCGTA	ref_5785_new	2	11	4	3	6	5	11	1	13	6
AGGCGGTTCGATAAAC	ref_5785_new	9	12	9	12	17	6	16	4	20	4
TCCCTTATACGGGTTG	ref_5785_new	1	2	4	2	4	1	8	2	4	4
CATATGTTAGACCTCA	ref_5785_new	4	28	7	11	43	12	32	6	34	5
TTCATTACTTATGAAT	ref_5785_new	2	12	1	2	9	2	5	1	8	1
CTTCAATGTATCTACG	ref_5785_new	10	48	13	16	64	17	53	16	54	10
AGGTATCACGGGATGT	ref_5785_new	87	213	99	72	223	95	229	74	245	68
CACCCGTGACCTTAGG	ref_5785_new	27	85	33	32	101	22	90	44	105	23
TAGTTCCTTTTCTCTT	ref_5785_new	18	19	17	12	31	14	34	12	36	10
TCAGCTCTATTTCCGC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GGAGCACCAACTGACC	alt_5785_new	5	26	8	7	20	6	21	6	18	11
ATGGGGGTCTCTCCTG	ref_5785_new	16	37	9	12	38	9	39	7	37	23
ATTATTGCAAGTTGGC	ref_5785_new	7	24	19	12	23	13	21	7	20	6
GATTCATGGAGCTTTA	ref_5785_new	39	116	43	49	120	44	135	42	133	45
CGTAGGCTACAGCATT	ref_5785_new	0	1	1	0	3	0	3	1	1	0
CCTTTTCTTATCGCTG	ref_5785_new	3	19	9	5	14	10	10	9	16	5
ACTTAGTCTTTCCAAG	ref_5785_new	39	100	38	25	109	26	114	22	130	36
ACTTGTTGGAGGACAT	ref_5785_new	14	41	5	7	33	6	32	13	53	8
CACGTTCAACTGGTGG	alt_5785_new	21	104	33	25	116	21	96	19	85	23
CTAAGCCTCTCGCCCG	ref_5785_new	2	49	5	8	42	3	14	5	36	9
GAAGTCCCGATCTTTG	ref_5785_new	5	12	5	4	15	11	24	11	25	7
GGGCCGGATATGCTAC	ref_5785_new	10	52	11	12	35	8	28	7	34	10
AACTATAGTGCTATAT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
TGGGCACTCAGGATCT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
TCCTTCCTTTCGGGTT	ref_5785_new	2	11	6	4	13	3	14	7	17	1
AACAGTTTACCATAAA	ref_5785_new	2	8	0	0	5	3	9	1	8	8
ATCACCCAGGCTCCCG	ref_5785_new	0	0	0	0	0	0	0	0	0	0
ACTATGGTTTTGTAAA	ref_5785_new	15	46	29	13	41	15	41	16	35	5
TAAGGCGTATCATGAC	ref_5785_new	3	21	6	11	20	5	25	4	20	6
GTCTATGCCAAGAAGG	ref_5785_new	1	13	3	9	9	2	9	5	16	7
TCTTGTTACGCCGGTG	ref_5785_new	4	22	6	8	9	9	21	8	19	4
GGAGGATCGCTAACGC	ref_5785_new	0	0	0	0	0	0	0	0	0	0
CAGGCTACAATCTACG	ref_5785_new	3	5	2	3	14	2	19	3	10	4
CACCATGCGGCACTCC	ref_5785_new	4	42	7	9	37	15	40	10	44	10
AGGAGCCTCACTTCCT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
CTTCCCCAAGACGGAT	ref_5785_new	0	28	4	4	32	4	38	2	32	1
TTGGTCGTGCCGGGCC	ref_5785_new	7	29	9	12	31	11	27	7	26	12
GTAGCCTCTCGGGTCC	ref_5785_new	6	30	14	15	32	9	25	8	31	10
GGGCGATATTTCATAT	ref_5785_new	12	32	22	14	22	15	28	8	34	5
CAACTTTTTGTACTAT	ref_5785_new	0	0	0	0	0	0	0	0	0	0
GTGCATCGAGGAGGTA	ref_5785_new	23	68	25	21	75	27	85	15	76	34
GGGAACGTTTCAGTAG	ref_5785_new	14	47	32	12	44	18	55	19	55	15
AAACTATTCCTTTTTG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTCGGTATAGGTG	ref_3356_fdr	48	20	55	46	6	29	10	30	15	36
GTATGAAAATTTATTA	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTACATTCGGGGC	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTAGAGGTCTGGT	ref_3356_fdr	1028	340	1253	1114	295	1031	301	987	362	912
CCGTGGGCTAACATGT	ref_3356_fdr	41	11	55	44	14	39	17	53	21	35
CTAGAAGAAGGAAGCC	ref_3356_fdr	292	86	347	288	98	273	94	288	88	252
GGCAAGGTGATGTAAG	ref_3356_fdr	268	61	359	288	70	254	94	268	82	232
GCTAGGTTAATTTATT	ref_3356_fdr	36	22	85	43	22	56	21	70	21	67
CTGCTGGATAAACGTG	ref_3356_fdr	1940	547	2317	2065	514	1929	562	1859	545	1720
AACGAAGCGTCCGATT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
ACCTCGAAGGACACTG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGGAGCTATGACCTTT	ref_3356_fdr	201	51	272	197	59	199	45	191	82	183
ATAGAGGCGTGTATAG	ref_3356_fdr	221	91	239	196	62	207	82	179	72	198
TCCATTAACTTATTAC	ref_3356_fdr	7	1	6	9	1	10	3	5	7	7
CGGTCAAGTTGGCTCG	ref_3356_fdr	56	28	93	62	22	88	14	70	14	51
AGAAATGCTCCGTGAG	ref_3356_fdr	105	24	118	93	19	81	21	106	12	72
GATAACGACTTTCGTC	ref_3356_fdr	213	28	232	219	42	173	48	159	56	170
TTCGGTATGGCCGTGC	ref_3356_fdr	184	63	211	201	60	185	45	193	39	161
TAGTACGATGAAGGCT	ref_3356_fdr	548	171	747	610	160	514	202	504	183	465
ATTCCGCATTAGGATC	ref_3356_fdr	42	10	77	61	8	40	19	51	7	43
TCCCGTATTACAAACT	ref_3356_fdr	42	21	52	48	26	62	26	45	24	63
TGTGACATTCACACGC	ref_3356_fdr	73	15	67	69	24	62	11	67	17	47
CGCTCAGTTCTTCGGC	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
GGCATATTTTTTTAAG	ref_3356_fdr	223	72	275	231	54	215	69	190	65	192
TTTTTTTTAAGTTGGA	ref_3356_fdr	17	9	9	14	10	10	5	8	1	19
TCTTATCTGAATAAGC	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
TCTAAAGTGTTGTAAT	ref_3356_fdr	115	29	128	111	23	111	32	117	24	126
GAGCTATCTGGTTTCT	ref_3356_fdr	172	57	153	147	58	165	53	150	62	116
GGCGCTTCACGAGTTA	ref_3356_fdr	194	51	203	201	55	194	69	161	75	145
GAGCGACGTTTCCTGC	ref_3356_fdr	549	174	710	614	190	555	174	538	188	564
AACTCGCCTGTCACTT	ref_3356_fdr	28	6	40	31	5	22	18	34	12	33
TGGATGCAGTGCGCGC	ref_3356_fdr	479	125	627	497	139	512	133	434	122	436
CCCTGCCGGAGTCCTA	alt_3356_fdr	537	136	599	456	141	450	152	427	150	443
GAATGAAGGCTCAAGG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
GGGACTCTTTGTGCGA	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
AAGTAGAGGGTCTTAT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
AAAACTGAGTCCAATT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
ATATAACTCCTAAACT	ref_3356_fdr	202	61	227	177	63	180	72	148	73	150
CTATGTCGTCACTTGA	ref_3356_fdr	59	13	61	36	17	45	5	36	20	44
GCAGCGCCGGCGAACT	ref_3356_fdr	162	53	246	190	40	150	63	147	55	157
TTCGGACACTCACGCG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
GTCTATGCTTGAGCCG	ref_3356_fdr	109	39	127	128	38	113	52	107	37	117
AACCTGCACAAGCCAG	ref_3356_fdr	40	24	48	52	25	21	28	45	17	37
TTAGTCCGTGCTTCTA	ref_3356_fdr	156	63	205	166	66	178	56	155	57	138
ACGAGCACTATGCTCA	ref_3356_fdr	111	61	142	114	37	126	43	94	39	99
GTAAGTATCTCAATTC	ref_3356_fdr	56	19	67	72	16	72	19	56	17	54
TTAAACTTCACGCAAC	ref_3356_fdr	152	51	208	169	52	158	54	144	49	131
GCACGGTCCCCCCAAG	ref_3356_fdr	122	34	124	101	30	103	25	89	21	93
TCTTTTGGGGGTCATT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATATGGCTTGGT	ref_3356_fdr	119	24	134	97	31	114	28	104	37	77
CGGGGAGCGGGTATAG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGATCACACTTTT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTTTGGCGATTT	ref_3356_fdr	128	27	129	106	27	111	32	91	48	92
TGTGTTGCAGATAAGT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTCTTTGGTTTGT	ref_3356_fdr	92	28	141	95	28	89	38	83	40	79
CTACAAATATTTTTAC	ref_3356_fdr	705	164	798	736	171	697	205	693	198	668
GGAGGCCATTGGTAGA	ref_3356_fdr	173	41	206	171	54	128	36	130	57	148
ATGACTCTCTGCTCAT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTTGTTTCGACTT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CTATAGTGTGACACAA	ref_3356_fdr	331	92	393	352	102	313	89	294	106	280
ATGGTGTTTATCCGCC	ref_3356_fdr	316	76	373	323	93	260	72	284	80	319
ACCGCAGTAAAAAACT	ref_3356_fdr	153	46	154	145	59	121	73	122	57	112
ACTCTGTGTCTTTAGC	ref_3356_fdr	226	84	252	202	70	200	67	199	83	184
GGATTATCTCATGTTG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCAGCTATTCTGG	ref_3356_fdr	172	57	185	167	44	170	54	158	48	130
CAGGGCACGTTATAGG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCATGTGGTGTGC	ref_3356_fdr	311	108	392	313	92	308	115	316	101	325
CACATGCGCTGCTTTG	ref_3356_fdr	28	3	36	24	14	29	10	23	11	20
TTTTGGTGGAACGGTT	ref_3356_fdr	13	6	15	15	6	10	3	10	7	10
ACCTCCATCGTTAGCG	ref_3356_fdr	43	7	52	54	17	47	6	55	17	48
CGATCATCCCACTCTC	ref_3356_fdr	37	19	52	63	15	45	17	37	19	43
CGTGATGACGAGAGTG	ref_3356_fdr	118	34	152	123	36	122	37	113	36	124
TACGCGAGAGCATATA	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CACGCTAGTTTGTGGG	ref_3356_fdr	125	37	132	106	38	112	35	135	35	103
CCAGCGCCTCTCGTTC	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CAAACAATATTGCGTT	ref_3356_fdr	415	88	483	387	112	376	100	385	123	392
CCAGCCTACTTAGACG	ref_3356_fdr	111	52	159	135	54	139	69	118	63	141
CCCATACTGACAACCT	ref_3356_fdr	95	37	99	56	26	75	21	80	25	82
CCAATTTGCCCCGGTG	ref_3356_fdr	21	9	40	37	11	24	17	33	15	22
CACAGAATGGTAAGCC	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGCCTCCTCAATA	ref_3356_fdr	83	19	94	92	32	57	38	82	28	91
GGGAGGTCTGCGATTA	ref_3356_fdr	397	91	454	423	95	392	100	351	115	366
CTACCCTCTAATCACT	ref_3356_fdr	1	1	1	2	1	3	1	1	1	0
TCCCCTGGTCGGGTGT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
AAAATTTCCTAATTTG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTGTGTCTCTTGT	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CATTCAGTGGAGAAGA	alt_3356_fdr	297	70	313	279	78	293	92	264	77	261
GCCTCGATGTGCAAGA	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
TGGGACATTGGTCGCA	ref_3356_fdr	90	24	115	109	22	76	19	95	40	94
TCGCTCTGCACTCTTT	ref_3356_fdr	172	49	153	122	38	120	35	141	47	162
CTGCCAGTACCCTTCA	ref_3356_fdr	74	26	96	92	33	72	15	64	23	62
TCGGTAGTTCCGCGGC	ref_3356_fdr	186	60	203	208	60	182	44	207	59	149
TTGGATTTACTTTTGT	ref_3356_fdr	27	25	36	32	28	38	28	22	40	26
ACAGGAGTTGATCTCC	ref_3356_fdr	57	18	66	62	24	44	15	43	27	52
GTTATGCAAATTTAAT	ref_3356_fdr	91	21	120	123	39	98	26	96	30	62
GCTGGTCCTATCGACG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTCCGTCATTTCT	ref_3356_fdr	293	96	394	331	90	315	101	283	99	260
ATGAGTACGTGGCTGT	ref_3356_fdr	160	49	171	149	43	130	52	142	53	135
TGTAGCTTTCCCCAAT	ref_3356_fdr	103	40	111	95	36	87	41	89	30	67
AGGTTGTTCCGCAGGT	ref_3356_fdr	59	13	86	89	21	61	29	55	28	51
GTCATTATTCCTCGTA	ref_3356_fdr	449	109	511	497	116	473	116	405	138	432
AAGATCCGCAAATTAA	ref_3356_fdr	121	40	163	113	36	122	36	124	30	118
ACGCATCGGACGACGT	ref_3356_fdr	162	32	222	180	36	187	31	153	31	181
GAATTTGTCCTGGGGG	ref_3356_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCACGGCACACTG	ref_3356_fdr	35	7	25	29	11	23	12	18	17	35
TTGTATCTGGGTTCGG	ref_3356_fdr	70	27	116	92	31	89	19	94	27	84
GGCTCAAGCTGCTTTG	ref_3356_fdr	61	23	78	56	13	55	24	74	7	63
GTACAACCACGTATAA	ref_3356_fdr	48	11	63	63	10	48	15	53	22	32
CGAGAGCGTGATGAGT	ref_3356_fdr	296	77	370	292	94	282	97	260	92	261
CTATCAAGATTCTTAG	alt_3356_fdr	238	76	303	250	67	230	81	199	85	231
CACCCGTCCAATCGCG	ref_3356_fdr	86	86	122	123	80	96	66	110	60	89
GAATGGCTTAGGATGA	ref_3356_fdr	40	9	58	42	4	42	9	31	9	39
GTGGAGAAGAGTATGT	ref_3356_fdr	59	13	80	66	15	58	20	59	21	43
AGTCGTCGAAATCTTA	ref_3356_fdr	39	15	46	46	16	55	11	28	17	48
GTATGTCTCGACGGGT	ref_3356_fdr	203	53	270	219	57	181	70	194	70	163
GACGTTCTGTTAACAT	ref_1495_missing	18	25	21	14	18	14	22	18	30	16
TGATCTTACCGTATCT	ref_1495_missing	16	24	17	9	29	13	41	13	36	7
AAGTAACTAACTTTCA	ref_1495_missing	26	19	27	24	21	23	27	25	19	26
TAGCGTATCCCGTGTA	ref_1495_missing	0	0	0	0	0	0	0	0	0	0
CCCTCCGCCCTAGCAC	ref_1495_missing	20	26	30	38	36	18	28	26	30	20
AACCTGTCAAGCAGCT	ref_1495_missing	14	18	17	14	21	11	10	16	21	10
ATTCGGGGCTCTCCGT	ref_1495_missing	4	4	5	4	4	0	9	2	4	3
CGATAGTGCAAGTCGG	ref_1495_missing	11	17	9	15	12	10	20	16	15	13
GATGTCATGTAATGCA	ref_1495_missing	64	60	54	54	43	66	48	51	81	44
GAGTGTTACGCTAATG	ref_1495_missing	1	0	0	0	0	2	0	0	1	0
TTCGGGTCTCCTCAGA	ref_1495_missing	144	147	171	142	158	169	200	161	200	148
TTTTGTTAGTCCTTTC	ref_1495_missing	103	144	133	105	140	78	131	91	144	100
TGGTATACGTCATACG	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
TATTCACTTTACTGCA	ref_1495_missing	12	17	27	19	31	16	15	22	23	11
GCTTTATTGAAGGTAA	ref_1495_missing	5	3	10	4	19	7	3	6	10	6
TGGTATAGTTATTGTA	ref_1495_missing	9	7	6	3	9	6	12	5	12	6
CATATGCCGTTGTATT	ref_1495_missing	42	34	62	42	35	39	41	39	40	45
CTTTGTGCTCTCATTT	ref_1495_missing	10	10	11	13	13	12	16	14	9	17
TGTGGCGAGGTTGCTT	ref_1495_missing	6	14	13	10	6	11	21	6	12	4
CTAGACTAACTTTGCT	ref_1495_missing	7	18	5	7	8	3	11	2	9	3
TCTAGGTGTCATTAAG	ref_1495_missing	34	81	60	43	72	47	93	42	90	31
AGAAACTACTTTCGCG	ref_1495_missing	153	159	177	158	155	128	187	141	153	114
TTATCGTGGAAAGCGC	ref_1495_missing	181	188	197	170	191	164	170	182	206	148
CGTGTGTACATTGCCT	ref_1495_missing	14	38	14	17	17	14	25	16	27	15
TCACAGTCAATAACGC	alt_5635_new	3	2	4	3	5	2	3	0	1	4
GGAAGTAGTTAAGTAT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
ATCATTAGCGGGTCTC	alt_5635_new	8	14	16	18	13	17	14	11	19	18
TTTCACATTTGAATCA	alt_5635_new	25	28	20	22	28	25	24	21	42	19
CGTTGTACGTTTATGG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CAAATTTACAGCCGTT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
AACGCTGGATGATAAT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CCTTTTTTAGATGGGT	alt_5635_new	43	50	37	43	57	27	53	41	75	48
TCGCTTTGGATCTTCT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
AGGGCCCACGAGCCTG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TATCGAATATTCTGTA	alt_5635_new	28	46	40	42	58	29	58	26	65	31
CTATCTAATGTATCTG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GCCGGATGCGGCTCTA	alt_5635_new	25	43	31	25	43	21	29	25	59	33
GAAGCCACGGATCATC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
ATAGGGCTATTAACGG	alt_5635_new	14	13	16	12	23	7	26	14	19	15
TGTGGACAACTCCGTG	alt_5635_new	8	18	14	6	24	11	14	5	5	8
TGTCTGGGTACTCAGC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GCTTCGTTTTTCCAGG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
ATTTTATTATTCCGAT	alt_5635_new	20	25	30	35	39	28	37	23	29	24
AGGGTTCATACGCACG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TGAGTCCATTGTCACT	alt_5635_new	13	20	15	7	10	12	14	7	22	5
TACGCCCAATGCAGTA	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GTTGGCGGTCTGTCAT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
AGATCGGGTACAGATC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TTTAATTTCGTGATTC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GGCCTTTTTGAGGATC	alt_5635_new	10	22	11	14	17	15	13	22	13	16
GGGCGGTTGCAAGCCT	alt_5635_new	27	61	38	38	43	34	48	23	63	32
CAACTACCATGTTGTA	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CCCGCCCATATAGTCG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TTTCTTTATTCGTGGT	alt_5635_new	24	30	26	12	22	21	30	21	24	10
GATCACTGATCTTGTG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
AGCTGAATATTTTAGT	alt_5635_new	12	8	11	5	16	10	8	7	8	12
GAACAGTGTGCCGGTG	alt_5635_new	0	0	0	0	0	0	0	0	1	0
CGCATGCGGGCTCAAA	alt_5635_new	0	0	0	0	0	0	0	0	0	0
ACATTTGGCTTGGCGT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TTATTATCTTTGGTTC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TTTCGCATAACGGTTG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTCGTCCGGGG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GACTTCATCGTCGGTG	alt_5635_new	5	3	5	5	12	8	0	10	4	6
TATTATTAATCGGATA	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CACTTGACGGGCAATC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CAATGCCCTCCGATCT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TTGTTTGATTGAACGT	alt_5635_new	38	86	81	67	97	37	93	50	84	48
TTTGGCGACATTTCTG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TATTGTGCTTGCGACT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GGGGGGTTTCCAACCC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CTTGTATAATCAGCGT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CTTTCCGTTGGTATGT	alt_5635_new	5	8	8	4	8	5	12	6	9	6
TCGGAATAAAATATTT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GGTATCGCTTGGTACC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GCCTCTGCCACGTTAA	alt_5635_new	8	18	12	8	11	11	12	13	19	9
TATGCGCCTGCACCCT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
AGGTTCTGCAATAGCG	alt_5635_new	12	24	26	19	22	13	27	16	30	11
CAGGTTCAGCTCCGTG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
ATCGGTTATAGCCTTG	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CTAATCGGCACTTTGA	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GAAATTCTCAACGTTG	alt_5635_new	11	16	14	13	17	20	17	8	10	8
TCAAGTAAGTCAGGGC	alt_5635_new	12	12	18	12	14	13	14	7	19	6
GTTTCTTTTCGAGTGA	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GGAACGTACTTTCTAG	ref_5635_new	23	27	35	19	38	14	22	20	33	24
GCTTAATTGTGAAACT	alt_5635_new	15	19	18	17	19	12	23	14	14	9
GAGTGTTATCGGTCGG	alt_5635_new	12	7	13	9	10	8	13	10	16	9
TGGTCACACATGGTCG	alt_5635_new	154	178	162	176	176	128	195	117	170	127
AGTTATTGATCAATAA	alt_5635_new	76	87	90	68	109	65	99	66	105	47
CTGCAAACTTGAGTTA	alt_5635_new	13	14	7	6	14	12	11	8	21	2
TCTAAGTATGCGAAAT	alt_5635_new	74	91	87	74	128	71	102	71	124	65
TCCCTACTCTGCTGTT	alt_5635_new	5	12	6	6	18	1	21	13	12	2
AGGTATAAGCCCTTGC	alt_5635_new	6	3	4	7	6	8	5	3	4	1
TTATCTTAGGTCAAGT	alt_5635_new	4	3	3	9	13	5	6	9	8	3
TACTCTTCCTTTCGGT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
TATCTCTAAGGCTCTT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
AAGTGGTGCCTAGTTC	alt_5635_new	21	30	11	13	28	10	16	12	21	5
CTATTGAATACGACAT	alt_5635_new	14	9	17	10	24	13	17	6	29	6
TCGTGGCGCAGCAAAC	alt_5635_new	0	0	0	0	0	0	0	0	0	0
CTGTACCGTGTCAGCT	alt_5635_new	0	0	0	0	0	0	0	0	0	0
GAGGTCGGGCATGATC	alt_5635_new	5	13	6	7	8	5	12	5	13	4
CACATGGCTTCGATTG	alt_5647_new	0	0	0	0	0	0	0	0	0	0
GCCACAGTTATCGCCT	alt_5647_new	24	9	18	15	18	15	23	14	19	20
TGAATTATCCTTACCA	alt_5647_new	9	5	3	3	9	0	3	3	13	7
GAGCCACATCATAAGA	alt_5647_new	6	12	14	13	20	7	23	6	19	16
CGCATACGGTATTAGC	alt_5647_new	30	31	29	23	31	25	41	20	32	16
AAATTTGTATCTGCGG	alt_5647_new	0	0	0	0	0	0	0	0	0	0
CTGTCGGGCACTACCT	alt_5647_new	4	5	6	6	10	6	6	8	4	4
TCCGTGGGACTTCCAC	alt_5647_new	0	0	0	0	0	0	0	0	0	0
CTAAACGTGAGAAGCC	alt_5647_new	14	20	30	17	15	18	31	17	34	31
GTTTGCTTTTGCGGCA	ref_5647_new	18	23	21	16	22	12	35	10	50	10
CATCCAGTTCAGCAGA	alt_5647_new	26	32	35	30	31	30	42	31	44	34
CCTGTGCTCATGCTGT	alt_5647_new	3	7	0	5	9	8	6	7	7	2
AGATTGCGATTCTCTC	alt_5647_new	16	21	19	24	24	26	18	15	17	15
ATAGGTTCATCCGGAG	alt_5647_new	0	0	0	0	0	0	0	0	0	0
TCGCGCTACCGCCAAG	alt_5647_new	94	115	98	99	147	111	119	86	159	94
TACGGGGCTTATTATT	alt_5647_new	0	0	0	0	0	0	0	0	0	0
CAGCTTACCGAATATT	alt_5647_new	6	20	13	7	15	5	21	15	23	13
GGGGGGCGATCCGACA	alt_5647_new	35	52	40	45	47	27	53	29	51	37
CCGGCAAGGGACAGTA	alt_5647_new	51	98	78	58	105	64	93	58	113	52
TCCTGCGGCTCTTGGG	alt_5647_new	30	34	28	33	38	36	41	15	49	30
ATTTAGATCGCATTGG	alt_5647_new	0	8	8	5	5	3	7	1	3	4
AACCGTGACTAACGTA	alt_5647_new	61	66	61	49	79	45	61	50	51	39
GGGGACCCAATCCTAA	alt_5647_new	25	46	43	29	39	33	43	32	26	37
ATCCTGAATACCGACA	alt_5647_new	37	33	29	36	28	35	35	30	23	27
TCCCGCCAGAGCCGGT	ref_5647_new	106	97	127	89	106	129	127	96	117	88
ACTTATTAGCAGTTGT	alt_5647_new	8	6	7	1	2	11	8	8	1	4
CACCAGTTGTATTTTC	alt_5647_new	0	0	0	0	0	0	0	0	0	0
TTGATGCAACCTCGAA	alt_5647_new	0	0	0	0	0	0	0	0	0	0
GGAGGCTATTGAGCAT	alt_5647_new	15	25	21	21	22	18	17	9	35	14
TGACGTGTCTTTTCTA	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
AATACGTGGTTACGAT	alt_2406_RC	63	82	76	68	92	58	79	55	84	56
AATGCGGAGTTATTGC	alt_2406_RC	15	28	30	15	35	33	38	26	28	25
GTTGCTGGTTAAACGG	alt_2406_RC	18	47	39	25	57	18	38	25	45	22
ACGGGCCGTTACTCGG	alt_2406_RC	15	30	21	20	17	22	32	13	28	19
GCGTAGGGTCGGTTGA	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
TCAGGGTGGGGAAGCC	alt_2406_RC	9	7	24	12	16	6	25	9	25	5
TGCGCGTCGTTATCAG	alt_2406_RC	21	33	33	28	35	26	41	25	37	26
GGGTGGACGGATCCGT	alt_2406_RC	10	22	14	14	12	17	19	18	20	15
CCAGGTGATCATCGCA	alt_2406_RC	34	61	43	44	62	36	78	40	84	34
AGACGGCTGTTATTTC	alt_2406_RC	55	79	55	43	85	39	88	39	90	35
TTCCGAATACGCAGCG	alt_2406_RC	3	18	14	14	20	18	9	14	16	12
TGCGTCAGTCGTAACC	alt_2406_RC	27	34	30	20	39	23	33	15	43	20
TCGATAACCTGGGGAG	alt_2406_RC	92	135	117	95	151	78	119	92	147	95
GATTACCCTTTATTCC	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GTTCGGTGGCGAGTGT	alt_2406_RC	37	42	31	26	38	26	57	26	37	16
TAGTTTTAGTAAGCCT	alt_2406_RC	44	60	52	52	62	27	55	31	72	37
CGATAAGTGACTCCCT	alt_2406_RC	11	19	6	12	16	11	23	15	24	15
CATTGATAATAGTTGA	alt_2406_RC	3	7	4	5	4	6	3	7	11	5
TGTTAATTTTCCGGCC	alt_2406_RC	34	52	41	48	61	42	63	40	60	36
TGGCAGGATATTCCTT	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
TTAGCTTCGTAGGGTC	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTCTCAGTGAGG	alt_2406_RC	153	170	156	133	162	122	208	122	207	140
GTACCCCTACGCTTTG	alt_2406_RC	9	10	10	7	16	2	24	4	13	4
TCTTCTCTCGTGGAGG	alt_2406_RC	8	33	14	10	23	8	31	15	41	12
ACCCGTGCGAGAATGT	alt_2406_RC	114	139	108	111	148	90	126	100	126	93
TTTCTCTGAATTCACC	alt_2406_RC	13	9	12	11	5	1	10	4	10	7
CGTCCGCTCCGCCGAG	alt_2406_RC	7	10	8	3	12	3	14	6	12	4
TTCCCGATCAGTGCTG	alt_2406_RC	24	58	30	27	61	12	47	27	64	13
TCTCTTGATCATTGAA	alt_2406_RC	20	50	26	38	50	35	49	23	48	24
GAAGTTAAACCCATAG	alt_2406_RC	3	10	7	4	14	7	6	7	10	6
CATGATGGGTCGGGGT	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
TTGGCCGGTGTTCCTC	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
CCCTTATTGCCAAATC	alt_2406_RC	8	6	11	6	14	6	5	7	9	4
GCCCGGCTTTTCGAGG	alt_2406_RC	73	122	99	78	119	83	108	70	115	74
CTATCGATTTTAGATT	alt_2406_RC	5	4	3	1	4	1	4	1	3	1
GTTACCGGCCGATTCG	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
TGTCGTGGTGTAATTT	alt_2406_RC	6	10	6	13	7	10	8	10	14	12
CTCGTATTTATCCTAG	alt_2406_RC	64	89	72	53	75	51	80	33	100	61
TAACAGTGGAAAATTC	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
CCTGTCAGTTCTGATG	alt_2406_RC	4	11	4	5	7	8	11	4	8	4
ACTACTTTTCTAGCAA	alt_2406_RC	79	80	84	51	94	69	101	55	101	63
CCGTTGAAAAAAGGCC	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GCGTACACTTGGTGGG	alt_2406_RC	1	8	9	5	12	8	20	6	11	8
TCTAGCATGACTGGCA	alt_2406_RC	11	31	13	21	21	16	39	20	37	13
CGACATCGGTCTTGTC	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
AGCCCGCTTATACACT	alt_2406_RC	8	32	8	13	29	8	18	4	22	4
TGTAAGCTAACGTCTA	alt_2406_RC	23	49	32	16	55	17	63	35	29	21
CGCCCTCGCAACCTCA	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GCTCTTTCAGGATTCA	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GTTGCTTTTCTGGAGT	alt_2406_RC	21	27	29	23	39	18	36	19	49	19
GTTCTTCGAGTCGGAC	alt_2406_RC	43	89	85	57	91	61	71	61	94	62
CACCTAAGAAATGTTG	alt_2406_RC	3	19	11	12	12	10	14	1	15	5
GTGTAATGGTTTCAGG	alt_2406_RC	10	20	10	13	17	16	11	7	21	17
CGGTTTTTTATATATG	alt_2406_RC	25	40	27	35	42	22	37	28	50	24
GGTTCTGTGTTCCGTA	alt_2406_RC	14	20	12	16	25	21	32	16	26	11
CTGATCGTCGCGTGCA	alt_2406_RC	3	24	11	3	25	2	25	9	27	2
TTTCCCCTCGGGGTCG	alt_2406_RC	20	26	19	13	36	21	17	10	23	18
ATACCATCCTCGCCTC	alt_2406_RC	18	23	10	17	24	15	18	15	18	12
TGAGACTTACTATTCC	alt_2406_RC	94	191	150	141	192	106	234	119	230	97
TTACCCCTCCATTTCG	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GTTTTCTTCCCTTTTA	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
TATTCCCGGGTTGGCC	alt_2406_RC	16	35	26	20	37	21	43	13	33	8
TGTAACAGTCATGTCA	alt_2406_RC	42	88	57	45	82	42	68	38	86	48
TACTACTGATTTTTCA	alt_2406_RC	40	54	34	49	49	29	63	34	49	40
ACCTCCACGTGGGCTC	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GTTGTTAATCTCCGCT	alt_2406_RC	58	55	45	47	76	46	76	35	74	51
AATAGAGCATAGCCAT	alt_2406_RC	79	122	93	76	141	88	151	73	148	86
GGACGTGGGTATACAG	alt_2406_RC	29	12	23	15	25	18	23	17	30	16
GGTCCACCTGCGGGTT	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
TCACTCTATTTTACCG	alt_2406_RC	44	74	62	54	91	47	68	34	83	42
GTTCAGTATGTTATTT	alt_2406_RC	13	11	18	17	23	12	15	6	14	8
TTTCACATGCAGTCGG	alt_2406_RC	19	26	15	19	39	18	30	24	31	14
TTCTTCTCACATTCAC	alt_2406_RC	4	14	15	13	16	12	16	10	15	6
GTCTGCTTCAATTGTG	alt_2406_RC	4	5	3	4	8	3	10	4	3	3
CATCTTCAGCATCTTC	alt_2406_RC	1	1	0	2	3	3	4	2	2	0
TCAGTTGTGCCGAGTT	alt_2406_RC	11	14	13	10	15	13	19	10	17	14
TAGATGAGGCCGCTCA	alt_2406_RC	8	7	13	5	14	15	14	8	18	3
GAACCTTTCCCTTCTT	alt_2406_RC	3	6	2	1	6	4	8	8	5	6
CCTACGCCTGCAACTA	alt_2406_RC	2	7	10	5	13	8	10	5	14	5
TTATATGTTCTGAGTC	alt_2406_RC	13	17	21	10	22	13	22	11	18	7
TAGGAAGCCCGATTCT	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GCGGTTACGTGCTTCC	alt_2406_RC	102	55	117	101	52	95	62	115	60	111
GACATTGCCGGTACCT	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
GAGACCAGTTTGAATT	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
CTTATACTTTAACCGT	alt_2406_RC	0	0	0	0	0	0	0	0	0	0
CTATCCCCCCCCTGTA	alt_2406_RC	15	16	8	14	19	9	24	6	16	9
ATTAACTAATCGAGGG	alt_2406_RC	10	5	6	1	6	11	4	7	15	5
CATGTGCGGCTACGTC	alt_2406_RC	47	61	53	31	53	31	50	36	59	34
GCCCTCTGATCGCGTC	alt_2406_RC	36	60	60	30	65	29	54	37	72	32
TAGGCTGCTGTCAAAA	ref_1616_fdr	82	158	118	84	155	63	148	91	150	67
CCGAAGTTCTTTACGA	ref_1616_fdr	7	12	7	7	10	11	16	5	13	6
GTCATCTCTTCATGGA	ref_1616_fdr	24	24	30	16	20	26	38	17	30	24
TCTGTTTTGGCCCTTG	ref_1616_fdr	22	41	26	14	26	25	36	27	36	15
CGCGCACTATCTCTTA	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
ACGTCTTAGTCGTTCA	ref_1616_fdr	21	41	41	38	46	27	37	28	62	34
TCAATCATGTCACTCT	ref_1616_fdr	8	10	11	9	9	9	20	8	11	9
CTGTTAATCCGTTTTT	ref_1616_fdr	53	80	58	63	65	55	72	42	74	50
TATTAGCTCCGCTATA	ref_1616_fdr	25	36	39	48	54	35	50	54	45	34
CCGGGCCTTGCGACAG	ref_1616_fdr	22	26	22	13	32	6	31	9	40	11
ACATTCTTTTTTTTCC	ref_1616_fdr	42	45	63	39	57	39	55	35	54	29
AGGGGGAACATTGATT	ref_1616_fdr	15	12	19	10	21	8	32	7	23	11
AGGTTTTTTCGTATAT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCCACTCACCTTT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
AGACCGCGGACATTAT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTTGTTCATGCT	ref_1616_fdr	21	46	40	26	53	21	57	24	52	24
CATATTCGTCATCGTG	ref_1616_fdr	30	41	29	30	48	29	34	25	42	33
TGCGGTCAGTCTATGA	ref_1616_fdr	48	78	64	42	88	54	83	50	85	34
GCGTAGTCTAATGACC	ref_1616_fdr	8	14	8	8	7	8	13	5	10	4
TTATCGTATGCATAAT	ref_1616_fdr	28	39	31	31	49	23	30	29	45	16
AACTGCCCGTTGAGTT	ref_1616_fdr	16	37	15	28	30	23	40	24	36	17
TTCCATCGTTGGTTGT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCGCAGGATTCAGCTA	ref_1616_fdr	8	24	21	14	21	9	13	14	19	8
CACCAAAACCTTAGTT	ref_1616_fdr	30	68	38	36	52	45	75	21	69	23
GAGCATGGGAATATTC	ref_1616_fdr	12	24	16	17	32	12	22	23	15	12
ATTATGCGCCTTAGTG	ref_1616_fdr	9	12	5	3	11	4	9	6	13	5
TTGACCCCGCACGTCA	ref_1616_fdr	22	37	35	24	47	15	36	19	45	21
AGGTGTATGAGCCCGC	ref_1616_fdr	63	93	81	56	102	57	111	50	118	37
TCTCTGTTAACAGCAT	ref_1616_fdr	4	5	5	2	16	4	14	3	13	4
AGAGTAGCTACTTACG	ref_1616_fdr	0	6	1	0	8	3	8	1	8	1
ATTGAAACTCACCACC	ref_1616_fdr	9	6	8	11	10	13	9	5	9	7
GATTACTACACATATT	ref_1616_fdr	6	15	8	9	18	4	19	10	17	13
GTACAGCGAAAGTCCA	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TGAACGTTGGTTCCCG	ref_1616_fdr	19	45	18	31	33	21	42	41	34	31
AACTTCGGTCTGCAAT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TATTAGTGCCAGAGGC	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
GACTATTGTTATCTTC	ref_1616_fdr	20	35	27	19	27	14	22	18	20	18
TTACAACATTTTTCCA	ref_1616_fdr	37	59	57	35	57	49	43	40	55	29
TTCGAATGATAGTAGC	ref_1616_fdr	5	12	4	18	15	8	20	5	14	7
TTTTCCCGAGCATCAT	ref_1616_fdr	13	25	26	21	28	29	26	14	34	10
GGACTGGCAGAGAGTC	ref_1616_fdr	47	48	57	37	73	39	60	38	50	26
GTGCCATACGTATGGC	ref_1616_fdr	73	71	76	48	101	66	80	56	91	42
TTACCCCTGGAAGTTC	ref_1616_fdr	9	27	16	19	29	11	25	11	32	12
CTATGCCTCAATACCT	ref_1616_fdr	2	3	1	0	0	0	1	0	0	0
GGTCTTACACAATGTT	ref_1616_fdr	14	10	8	7	6	6	12	10	10	9
ACGGGAGCGCTGTACG	ref_1616_fdr	15	23	21	23	22	11	15	11	34	11
TCCTGAAAGTGGCTGA	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
CATGGGTTTCCTCACA	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCCACGCTGATAGTAT	ref_1616_fdr	21	32	35	18	41	25	43	24	62	19
TTCTGATACGCTGGCT	ref_1616_fdr	30	45	49	31	35	36	35	31	48	15
TGATGTGTGGAGGTTA	ref_1616_fdr	10	7	19	8	12	13	13	10	20	13
AGCTTTTGATTAACCG	ref_1616_fdr	45	79	75	47	62	54	65	57	64	43
GGGATAGCCAAAATTA	ref_1616_fdr	4	7	5	6	3	4	11	7	1	7
CTAAGATATCCGTCTC	ref_1616_fdr	2	6	0	3	4	1	3	2	4	0
TTTGTTCAATCGGTTC	ref_1616_fdr	22	31	36	27	57	23	52	18	57	30
TCTTTAGCGTGTTTTA	ref_1616_fdr	3	13	4	5	17	5	6	3	13	6
GCGTTACGTCAGACAA	ref_1616_fdr	17	21	28	18	19	17	30	17	24	17
TTTGTACTTCTGAGGC	ref_1616_fdr	42	84	43	43	61	38	63	32	69	41
ATTGTATTTGGCCAGA	ref_1616_fdr	162	247	187	160	280	163	269	160	286	151
TATCGCGGATCAATAG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
CTGGAATACGCCTGCG	ref_1616_fdr	13	11	25	20	19	21	35	13	23	9
AGGTAATTCTAGCACC	ref_1616_fdr	55	74	50	52	59	61	71	35	78	44
CCTTACAATTTTTAAC	ref_1616_fdr	23	38	28	22	45	15	36	18	53	22
AACTCATGACTCAACC	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
AGCCATTTTAATGTTG	ref_1616_fdr	6	16	14	10	6	15	20	14	27	5
ACCGCTCAGCGTCTTT	ref_1616_fdr	16	24	10	12	24	10	34	10	24	14
AAAATATTATTGCGTT	ref_1616_fdr	33	39	37	30	39	29	46	30	37	25
TGGATTCGTCTGTTAC	ref_1616_fdr	36	40	27	32	57	33	54	30	53	37
ACCGTTATTGGTGTGA	ref_1616_fdr	9	11	6	3	14	0	13	4	5	3
TTAAGCTATGGTTGGA	ref_1616_fdr	142	233	187	145	217	143	223	119	221	118
TAGGGTCCCCTCATTC	ref_1616_fdr	6	17	3	3	6	5	2	4	4	5
CCGGCCTATCCCTGTT	ref_1616_fdr	7	34	7	5	36	5	26	4	45	3
CATACCCTGGTTAGTT	ref_1616_fdr	0	1	3	0	0	0	0	1	2	1
GATATTTTAGACTGCC	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCAGAGACCAAGC	ref_1616_fdr	111	161	132	76	137	91	165	77	187	102
TCTTATAGTGGGTTGT	ref_1616_fdr	35	70	56	52	77	48	77	37	74	45
CATGTTCCTGATTACT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATGTACGTCGGT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TGATTCAACGGACAAA	ref_1616_fdr	9	9	13	5	19	6	17	12	5	9
ATAGCGCTTCTAACGG	ref_1616_fdr	260	368	301	221	350	246	401	217	395	202
TTCCGCACGGTAGGTC	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
CATGATTGTAAGCCGG	ref_1616_fdr	77	87	82	54	95	72	112	52	112	75
CCCCGTTCATTTCGGG	ref_1616_fdr	10	29	14	13	28	14	25	11	17	10
TGTTTTACTATACGAT	ref_1616_fdr	17	16	15	9	37	12	21	8	13	6
CTGTGTATGCCGGTTC	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCGTAAAATTTCA	ref_1616_fdr	18	10	14	8	11	7	8	2	17	5
AAGCTTAAGTTTTGGG	ref_1616_fdr	2	11	8	7	10	6	12	1	13	7
CAGGGCACTACAACAC	ref_1616_fdr	14	26	19	14	34	10	18	16	21	13
TTTGGAATTTAGGCCT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGTCTCTAGACGT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TAAGAAATGCTATCGG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAGCGAACATCTT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTCAGGGTCCCTG	ref_1616_fdr	38	65	28	36	63	33	61	33	39	29
CCGAGTACCTATTGTC	ref_1616_fdr	27	66	47	35	53	32	54	25	67	43
TGTGTCGACTTGCGTG	ref_1616_fdr	45	69	40	39	57	36	56	20	58	37
AGGCATAGCTGGGAAA	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGCCATCTCCCTG	ref_1616_fdr	15	40	21	23	41	18	31	18	42	17
ACTGCTAAGGCATCAT	ref_1616_fdr	14	7	13	14	11	6	16	8	10	4
CTCTCGACGACCTGAA	ref_1616_fdr	24	36	25	28	27	25	42	19	48	30
CCTTCGATTTGTTGCA	ref_1616_fdr	34	68	35	25	87	18	90	30	111	24
ATGCAACGTCTCTGGC	ref_1616_fdr	62	75	65	43	84	49	89	57	72	46
TCACGAGTGAACGCAA	ref_1616_fdr	48	60	63	49	72	49	67	33	60	38
TGCAACCAGCTCGATT	ref_1616_fdr	36	98	67	60	84	40	98	53	70	45
ACGATCTTCTCCGTAA	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGCATCGGCGGGG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTTCCCCAAGTGG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
CTATATACCGCAACGT	ref_1616_fdr	21	45	25	22	43	16	46	15	55	17
TGCACGGTACGTCCAG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTCCCGATTAACC	ref_1616_fdr	17	24	15	8	15	10	15	21	22	16
GCTCAATGGCTCCTTA	ref_1616_fdr	43	39	53	38	48	23	46	22	58	25
TCCTTGGTGGTAGGGT	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
AGTAAATGGACACTGG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
GAAGACAGCCTGGCCA	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
AACTCTGCTCGCTTAG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TTCGACACATTCTTGG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TATGCATCGATTGTAG	ref_1616_fdr	7	16	12	14	12	15	11	12	18	12
CTTTAGTGTAAGATCT	ref_1616_fdr	5	8	12	7	8	3	7	5	13	11
TCATGTAATTGATTTC	ref_1616_fdr	25	46	32	32	42	33	29	33	40	21
TGCAAGCTCCTTTGTG	ref_1616_fdr	37	41	45	29	29	29	54	11	60	28
TGCATACGCATAAATG	ref_1616_fdr	4	13	12	10	11	10	17	5	12	6
CGCTACAGAATTATTG	ref_1616_fdr	27	29	26	21	37	20	39	16	43	20
GTATAAGACGCCTTGT	ref_1616_fdr	0	0	2	0	2	0	0	2	0	0
ACACTTTGTTGGCGGG	ref_1616_fdr	48	56	43	35	49	40	47	32	38	40
GAAAACTATCGTTTGG	ref_1616_fdr	8	16	7	6	15	6	10	6	14	7
CTACGCATGTCGTATC	ref_1616_fdr	20	32	26	21	33	20	46	22	31	16
TCTTTGGTGTTGGTTT	ref_1616_fdr	0	21	8	11	10	8	20	7	21	10
GGTTTACGGGGGGTAA	ref_1616_fdr	8	8	8	8	5	10	11	7	14	4
ACTCACCGGTTTGTTC	ref_1616_fdr	5	22	12	7	15	8	18	4	15	4
GTTTCCACGTCGCATC	ref_1616_fdr	5	2	3	4	12	3	18	5	13	15
ATTCTAGGATAACCCA	ref_1616_fdr	0	2	0	0	2	0	0	0	2	2
TAAAAAGCGTAGGTAG	ref_1616_fdr	11	12	6	11	5	7	7	5	6	5
CTTAGCACCAGTAATG	ref_1616_fdr	60	87	60	68	100	57	111	51	81	69
TGGATCCTCTGGCTTG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGTGTTTATTAGT	ref_1616_fdr	2	6	4	6	7	7	10	3	17	9
CACTCTAAGGGGACCT	ref_1616_fdr	35	53	38	37	36	23	68	34	70	42
CTCTCCACCACCCGGC	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCTGTTTCTACAG	ref_1616_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGGTGATTTCCGC	ref_1616_fdr	7	13	12	16	15	10	19	7	11	8
GGCATATTCAGAAGAC	ref_1616_fdr	21	48	24	31	26	28	24	28	38	21
GGGTATCATTTATACT	ref_1616_fdr	4	9	1	2	4	3	8	4	3	2
TTTATATGCGGATGCA	ref_5964_new	33	41	34	28	45	27	40	23	41	24
TGAGCCGGGCCGCGCT	ref_5964_new	37	49	44	34	40	36	64	37	70	26
TACGGTGCTACTGGTT	ref_5964_new	32	82	68	45	73	37	77	48	67	41
TAATCATTCAACTCTC	ref_5964_new	22	46	31	21	38	24	32	25	35	26
AGTTTATTTCCGCAAG	ref_5964_new	6	12	16	8	13	8	11	10	7	8
GGATTCTCGACGCGAT	ref_5964_new	48	70	51	65	79	47	71	45	82	40
CCGGTCTGTATTCTTC	ref_5964_new	16	53	11	10	71	13	78	11	92	14
TCATTCACGTTTAATC	ref_5964_new	35	62	21	33	50	29	53	20	65	22
AAGATGACCTTCGTTT	ref_5964_new	50	61	58	36	59	48	80	36	78	46
CCTATTGTTACACGAC	ref_5964_new	7	42	14	11	28	8	39	8	37	13
ATATTGACTGTAGTTA	ref_5964_new	134	248	175	141	199	153	254	112	259	131
CGCATCTATGTCCGCA	ref_5964_new	44	50	52	36	63	36	50	28	65	44
CATTATAAGTAAGGTA	ref_5964_new	122	183	145	107	184	133	226	112	221	112
TATGCCCGTGACAGCA	ref_5964_new	37	55	48	35	54	36	54	28	80	30
GAAGAAATACCTTGCC	ref_5964_new	0	0	0	0	0	0	0	0	0	0
ACTCTTGCGCTTACTG	ref_5964_new	0	0	0	0	0	0	0	0	0	0
ACACCCACAGGCCCTT	ref_5964_new	0	0	0	0	0	0	0	0	0	0
GGTTTCCCGGTCCGTT	ref_5964_new	23	23	20	14	27	10	34	6	21	13
TCTTTGGGCTATACTC	ref_5964_new	3	11	4	4	7	3	3	4	3	1
AGCAGTCGTATAGGCT	ref_5964_new	11	13	13	10	19	11	19	11	20	11
ACCTGCCCAGCTTAAT	ref_5964_new	10	36	18	28	30	16	40	18	46	15
GCCAGGTGAACGCATG	ref_5964_new	13	15	5	7	14	6	14	6	7	9
TCCACTGTAGCGCCAT	ref_5964_new	0	0	0	0	0	0	0	0	0	0
ACTTTGGATTCCCCTC	ref_5964_new	0	0	0	0	0	0	0	0	0	0
TGACCAGGTTTGGACT	ref_5964_new	12	20	14	13	25	20	28	13	30	11
GTCTCGCCATAGACGA	ref_5964_new	0	0	0	0	0	0	0	0	0	0
TTACCTAGTGGTACGC	ref_5964_new	25	46	43	19	34	23	64	20	67	18
CGTGAGACGGGGGTGG	ref_5964_new	79	82	90	77	98	60	104	78	100	57
TTTCGTCATATGGATG	ref_5964_new	0	0	0	0	0	0	0	0	0	0
GGTGTCCTCGTACTGG	ref_5964_new	11	32	25	21	38	8	33	12	31	20
GGATATCCTTGTTAAC	ref_5964_new	54	91	54	27	52	36	64	35	62	44
TCATATGTATACGTAT	ref_5964_new	54	96	69	35	72	59	75	42	83	51
CGATAGCCTATTCCTT	ref_5964_new	31	106	54	41	114	41	124	52	132	45
GCCCGTATTTTTGAAG	ref_5964_new	0	0	0	0	0	0	0	0	0	0
AACTCTGTCTTTTCTC	ref_5964_new	0	0	0	0	0	0	0	0	0	0
GGAAGCGTACGGAGGG	ref_5964_new	12	29	20	15	37	18	35	17	33	12
GTCGCCTCGCCGGAAA	ref_5964_new	9	14	10	14	21	6	21	13	28	4
ACATTCGTGATTCTAA	ref_5964_new	0	0	0	0	0	0	0	0	0	0
GGTCATTTGCGGGCGA	ref_5964_new	0	0	0	0	0	0	0	0	0	0
CCTGTTAATCATTCCG	ref_5964_new	7	7	7	11	10	4	12	14	20	10
CGCTCTTATGCAATCT	ref_5964_new	0	0	0	0	0	0	0	0	0	0
TCTCGGTACAGTGCTA	ref_5964_new	50	76	56	36	82	54	86	42	83	41
GTTACTCCATATGACC	ref_5964_new	37	41	40	37	56	27	56	29	66	21
CCGGATACGCAGTAAG	ref_5964_new	29	38	43	25	37	29	46	25	49	28
CCGCGTTTAAAAGGGC	ref_5964_new	6	27	26	20	39	16	31	11	47	11
ATATGATCCTGGCTAC	ref_5964_new	97	156	147	104	138	88	149	91	172	105
TAGGCCCTCAGATCTT	ref_5964_new	28	25	35	20	34	23	30	26	23	19
TTACCCCCGTCTCCCC	ref_5964_new	22	43	15	24	53	26	46	32	45	17
TTGCGCCAGCCCCGTT	ref_5964_new	2	4	1	1	6	2	4	3	2	3
AACTTCGGGTCAATTG	ref_5964_new	43	67	35	44	58	37	67	49	64	36
CATATTTGTGATATAA	ref_5964_new	31	61	34	22	42	19	50	24	54	32
TGTATGGGCGGACCGC	ref_5964_new	6	19	4	7	14	5	14	6	8	13
GCGCCGTAACATTTCA	ref_5964_new	0	0	0	0	0	0	0	0	0	0
CCCTCGCTAACCCATG	ref_5964_new	8	13	15	7	14	9	13	12	27	12
TTTTTAGTAAATTTAC	ref_5964_new	14	28	26	20	30	7	30	10	18	7
CCGCCACTTATTTTCG	ref_5964_new	2	6	2	0	1	0	2	0	2	0
ACATCACTTAATCTAG	ref_5964_new	9	32	24	11	24	8	22	6	26	17
GGCCCGAACTCGCCCG	ref_5964_new	46	64	60	61	63	52	71	47	66	42
TAGCCAACTCATGGAG	ref_5964_new	91	169	116	118	194	92	210	97	184	133
CGAGGATGGTGTGGGC	ref_5964_new	51	85	65	36	80	57	69	46	86	59
GCTTTCCCGATACCTG	ref_5964_new	8	18	17	11	26	16	30	16	14	10
CGTGGTTTGTTGTTAT	ref_5964_new	0	0	0	0	0	0	0	0	0	0
AAGAATTGTGACATGT	ref_5964_new	39	58	54	32	68	26	62	41	47	36
CCCTGCGTGGCAGAGT	ref_5964_new	50	56	61	42	54	45	80	47	61	49
GCACCGTAATGGTGCC	ref_5964_new	0	4	0	1	4	1	1	0	0	2
AACTTGTTGCTGTATT	ref_5964_new	36	46	29	29	58	33	36	28	62	26
AGGAGGTTATTGCACT	ref_5964_new	17	19	18	29	22	12	34	14	37	14
AGAGGTCTGAGGTTGA	ref_5964_new	15	30	21	22	25	19	29	20	35	14
TTTCGCCGGTTACTCC	ref_5964_new	7	3	0	6	2	2	7	0	1	2
GTGGAAAAGCATGTAC	ref_5964_new	12	12	18	17	12	13	18	16	29	11
CTCCTCGAACATAGCA	ref_5964_new	0	0	0	0	0	0	0	0	0	0
ATTGAGCTCGCGTCTT	ref_5964_new	11	29	12	7	13	16	12	7	9	7
TTACTGTAAGCCCTTT	ref_5964_new	0	0	0	0	0	0	0	0	0	0
TTGGGCGACGATTTAC	ref_5964_new	36	125	51	55	78	40	122	43	130	34
TAGGGTCGCTTGCGTC	ref_5964_new	11	18	19	9	13	10	16	6	16	8
CTACATTTTAAATCCT	ref_5964_new	60	109	92	61	117	55	123	67	136	62
ATTCGATAGCGCTCTT	ref_5964_new	0	0	0	0	0	0	0	0	0	0
CCCGATGAGCCCGATT	ref_5964_new	19	52	18	12	61	20	46	16	44	13
TTTCCGCGTGCACGGG	ref_5964_new	4	5	2	5	5	0	4	0	4	6
TCTAGGTTATCTGGTT	ref_5964_new	0	0	0	0	0	0	0	0	0	0
CAGTGATTCTCATAGC	ref_5964_new	1	2	1	3	8	1	0	0	4	2
AAGTAGGTATGTCCTT	ref_5964_new	2	1	0	2	3	1	7	0	1	0
GGTCGCAGGTAAGACC	ref_5964_new	0	0	0	0	0	0	0	0	0	0
AAATGCACAATCTCCG	ref_5964_new	0	0	0	0	0	0	0	0	0	0
AAAGATTCCCGCTAGG	ref_5964_new	13	18	8	17	22	14	21	10	16	10
TGCCTTAGACCCTGTG	ref_5964_new	14	8	7	3	14	7	10	2	12	6
TGCATGTGGTTTCATC	ref_5964_new	30	42	36	34	52	32	64	39	57	35
AGAGAGACGTGTGTAT	ref_5964_new	4	3	1	4	7	6	3	1	7	0
CACTCCCCATCTCGCG	ref_5964_new	1	22	2	0	18	0	27	0	20	0
AATCTAAGAATTTTCC	ref_5964_new	36	44	43	31	44	25	65	25	49	36
TTTCCGCATGCACGGG	ref_5964_new	0	0	0	0	0	0	0	0	0	0
CAGTTTGGTTAACGTG	ref_5964_new	16	26	19	26	31	22	42	28	42	27
CACGCTTGCCCATGCA	ref_5964_new	13	39	15	9	40	13	24	14	30	10
TCTATCACTTTCTGGG	ref_5964_new	54	75	70	45	80	46	93	62	102	32
CATCCCAACGGTAAAC	ref_5964_new	11	24	24	17	28	18	24	16	31	18
ATAGCTGAGATGCACC	ref_5964_new	6	28	19	13	34	15	36	13	27	17
CATATATTTGCTTCGC	ref_5964_new	43	78	66	37	91	62	66	45	73	28
AGCTTCACGATTATAT	ref_5964_new	2	9	2	6	2	3	10	4	6	4
GTCGCCTGGAGGGTAA	ref_5964_new	56	48	48	30	47	25	56	29	66	18
ATCCTAGTTGGCGTAC	alt_5653_new	4	6	3	2	4	3	11	6	2	2
AGCTCTCAACTGTGGG	alt_5653_new	15	17	17	13	24	14	26	7	19	14
AATCTTATGGGGCTCA	alt_5653_new	19	19	12	25	9	16	17	16	13	13
TCCATCACGTGTTGGG	alt_5653_new	23	34	29	27	33	21	29	12	28	13
CAATGTCATCAACAAA	alt_5653_new	1	12	7	7	7	6	9	4	9	5
TGGGTTCTTCCTCGGG	alt_5653_new	0	0	0	0	0	0	0	0	0	0
AGGAGCAGGAACCGTG	alt_5653_new	0	3	0	0	4	1	0	1	2	0
TTTGAATTGGTAAGCA	alt_5653_new	26	31	20	19	18	20	33	18	42	12
GTTTTTTTTCCTATAC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
GTTAGAACCGGCATGT	alt_5653_new	28	49	44	32	47	18	35	34	62	29
GATACGCAATACATGC	alt_5653_new	25	32	47	31	34	34	43	26	43	26
CACACGAGCGCACACA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TTGCTCACGTATTAAT	alt_5653_new	0	0	0	0	0	0	0	0	0	0
ATCCAATTTTTGTGTG	alt_5653_new	23	8	19	16	13	19	13	10	11	16
CACTAGCGTTGGGTCT	alt_5653_new	17	19	10	9	17	16	20	11	18	10
AATATGCCACTGCGCG	alt_5653_new	4	10	6	7	8	5	7	3	4	4
CTTGTACTGACACTTA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
GGAATTAACATCATAT	alt_5653_new	24	25	21	25	41	24	27	24	36	16
ACACCATTTCGGAGTA	alt_5653_new	27	41	26	26	50	30	42	16	45	19
TCCGGTTCCGAGGGCA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TACCACCTCGGCGCGC	ref_5653_new	34	58	43	35	68	27	51	39	79	40
CCCCATCGGCGTCACC	alt_5653_new	4	7	8	5	4	6	4	6	7	7
TAATTTTTCCCTGTTT	alt_5653_new	9	7	8	10	12	19	11	8	11	14
TCGCTCTTCCCGCAAA	alt_5653_new	3	5	6	2	4	4	4	4	5	3
GAGCCGTGCGCGGTAT	alt_5653_new	10	10	10	6	16	15	15	11	20	4
AGTTCCGTTTATAATG	alt_5653_new	5	5	4	5	7	1	13	8	23	4
GCTATTATGGAGTTCA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TGTCAGGTCATTGCTG	alt_5653_new	0	0	0	0	0	0	0	0	0	0
CGCATTTTCTCCGAAC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
GTTGGTCCCCGCGATA	alt_5653_new	0	3	0	0	7	1	4	0	9	2
ACCTCCTTATACATTC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
CACATGGTGGTGCTCT	alt_5653_new	47	66	73	54	66	54	90	46	70	43
AAAAGCAAGGGTTATG	alt_5653_new	0	0	0	0	0	0	0	0	0	0
CTTTGCATGCGATGGC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
AACTTTCCGAACGCCT	alt_5653_new	9	12	11	2	7	1	8	5	10	9
GTTCACCTACGACAGT	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TTCTGGGGCCCTAACG	alt_5653_new	27	48	31	42	63	21	41	42	53	19
ATTGTCCATGTGGCGT	alt_5653_new	13	28	17	12	28	16	15	22	25	18
AGTCCGACGTCATTTA	alt_5653_new	32	48	34	34	53	28	47	30	46	29
TTTTGTTGAGTTGCTA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
GAATACTGAAGTACTA	alt_5653_new	0	1	2	1	4	0	4	1	1	0
GGACTTGGTTTGGGTG	alt_5653_new	9	8	13	12	8	8	18	6	15	4
ATAGTCTTGCCGGATA	alt_5653_new	161	226	191	215	264	149	229	169	232	148
TACAACCGGGTGTCTC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TCTACGGACACCGTGT	alt_5653_new	17	18	17	19	19	9	21	10	19	7
TGCCGTCACAAGAAGA	alt_5653_new	10	11	13	12	9	7	17	4	17	7
TGCTTCTCACTTGGCG	alt_5653_new	1	7	5	0	4	1	1	3	6	1
GGCGAGTCCACTATGA	alt_5653_new	18	21	21	21	27	16	47	27	35	15
TTACGGGTTAGACAAT	alt_5653_new	13	20	36	16	27	18	23	19	39	15
GTTTTTTTTTCCTATA	alt_5653_new	85	135	133	109	157	139	164	95	172	97
TTACCTGAGACATAGA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
GTTAGCACGCCTTTGA	alt_5653_new	19	32	22	23	25	19	39	18	40	17
CCTCTTCGCAACTCAT	alt_5653_new	32	37	41	17	50	29	46	26	55	29
CAGTCTTGCATACTCC	alt_5653_new	12	28	14	15	31	13	35	9	23	16
TCTCGTTTAAATGTTT	alt_5653_new	46	64	61	42	82	59	70	45	71	25
AATGTACCCGTTCGTC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TCCATTTGCCCCCGTG	alt_5653_new	18	21	16	17	21	25	20	21	24	10
TACGCTGTTTACCCCA	alt_5653_new	17	26	24	21	20	9	18	18	26	11
TTGTGGAGAGGTCGTT	alt_5653_new	8	12	15	11	20	18	20	16	28	13
ATGAGGCTAACTGTAA	alt_5653_new	19	21	20	19	34	17	24	18	38	13
GTTTTTTTTTTCTATA	alt_5653_new	5	0	0	0	2	2	0	3	0	1
TAAGCGCTTTATTGTT	alt_5653_new	8	20	15	13	15	8	17	9	12	15
AGATTGGCGATATAGA	alt_5653_new	8	15	24	13	21	13	28	15	24	15
CCTTGATATAGGTAAA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
ACTCTAAATAGAGGTG	alt_5653_new	0	0	0	0	0	0	0	0	0	0
CCGTTCGAGCTCCACT	alt_5653_new	3	8	0	4	5	5	4	7	1	4
TTGGCCTTCTTGTGCC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TATGCGTGTTACCTCA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
CAGTTTTTCGTAGAGT	alt_5653_new	155	236	159	128	209	127	206	124	234	111
AAGTTTGGCCGTCGCC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
GAACCGAGTAATAGTA	alt_5653_new	6	24	17	19	23	7	19	12	23	16
AGATTTATAACTATAA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TAGATCCGGGACGCTT	alt_5653_new	0	0	0	0	0	0	0	0	0	0
TTGCTTTCTATTCAAA	alt_5653_new	3	0	2	2	2	0	1	0	2	0
TCCAACTTATTAAGCT	alt_5653_new	6	7	8	8	9	5	16	12	13	8
ATAAGTCCTCTAATAC	alt_5653_new	0	0	0	0	0	0	0	0	0	0
CCTACATAGGCGTTCG	alt_5653_new	23	36	25	17	17	29	27	19	49	25
TGTCCAAACCTTGCTA	alt_5653_new	36	67	35	33	57	32	54	34	62	33
TTCGCTTATGATCTAG	alt_5653_new	0	0	0	0	0	0	0	0	0	0
GTCAAAAGGTTCAGGA	alt_5653_new	0	0	0	0	0	0	0	0	0	0
ACACCCCTGGGGATCA	ref_5653_new	91	143	86	78	119	61	116	71	143	60
GTTGGTATCTCTCAGA	alt_5653_new	6	7	7	11	8	5	7	10	9	1
ATAGTCTTGCTGGATA	alt_5653_new	0	0	0	1	1	0	0	0	0	0
CGCTCAATGTATCTAA	alt_5653_new	13	18	12	5	10	4	18	6	7	8
GTTTTTTTTTTCCTAT	alt_5653_new	0	0	0	0	0	0	0	0	0	0
ATACTGTTGCTTGGCC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TCTGCTGGGGTCATGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TATCGTGTGATCCATA	alt_5888_new	29	32	26	24	37	26	30	21	38	35
TTATCTATATTAGGAC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GGGTCTGTCGATGTTA	alt_5888_new	16	26	21	17	16	13	20	11	28	10
GCATGGCCTACTCTTC	alt_5888_new	36	63	42	47	57	44	42	49	45	34
GAATAAATTGTATTAT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GGCCAGAACTACAACG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CTCTGCCCCTTCATTG	alt_5888_new	24	44	40	34	55	31	67	23	64	29
AGTACCCAGGACCCCA	alt_5888_new	40	33	42	42	42	26	49	36	42	42
CTTGTAGAAGGCTATT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TTTCTAGTAAGCAGAC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
ATTACTCAGCACCTGC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GTTGAATCTTGTCACG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
AATTTCTGTCTCTCAT	alt_5888_new	13	21	23	14	14	13	24	21	13	14
CCAGCGGTACCTCTCG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCAGACTTCAATTAGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
ATTTTTGACCACGCGA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TTTTACTTCTGGCGAT	alt_5888_new	18	26	21	23	26	25	46	12	24	13
TCTCTTGCGAGGTCAT	alt_5888_new	218	281	244	189	297	209	322	164	304	186
ATGTCGCTAAAGGCCT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CCGCCGCCCCCTATTG	alt_5888_new	40	64	48	24	69	30	57	31	63	45
CTGTTACTTATTTTCT	alt_5888_new	7	3	4	2	8	5	3	1	7	6
TTTAGGGCCTCTACTC	alt_5888_new	14	22	15	14	11	14	29	24	25	15
GTACTCTAGACTCTGC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TATCATTTGTGGCCTT	alt_5888_new	64	65	68	60	78	51	83	73	95	54
ACAAGGCTACCGCGAG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCGTAACCCCGTGACA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CATGGAGCTATTCTCA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GTTCCCTCTCTAGTCT	alt_5888_new	3	6	6	7	6	7	6	8	11	14
TTGAATAGTTTTAAAT	alt_5888_new	5	4	3	2	6	0	2	3	7	2
GCATAGCGTTCCCTGG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TAGGCTATTTAAGTGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CATCGCCACTGCGGTT	alt_5888_new	0	2	0	2	3	1	12	2	6	2
GCTGAATACCTCTTTC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CCGTATCCGTTTCCTT	alt_5888_new	23	21	28	17	25	14	29	12	21	11
GGTTATTTATGTTACG	alt_5888_new	6	12	8	6	7	6	7	4	5	2
CTCACCGAATAAAGGG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCTTAACGACTGGTAA	alt_5888_new	19	15	18	22	19	8	23	19	20	15
GGGGGAACACCACCGT	alt_5888_new	5	5	4	2	8	4	4	4	3	2
AGACGCGTCAGGACGC	alt_5888_new	117	120	134	102	141	111	123	107	158	86
ACTAGCTAGTGAGATT	alt_5888_new	19	15	21	22	33	19	20	23	20	15
AACACTTGCGTTGATA	alt_5888_new	4	2	2	0	1	2	0	2	0	3
CAATTCATAGTATCCC	alt_5888_new	7	6	10	6	7	4	6	11	10	9
TACCAGTGATACTTAT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TACTTTGCTTACTTGG	alt_5888_new	3	0	0	0	0	0	2	2	0	1
ATCACGGCTTAGCTGT	alt_5888_new	1	2	4	0	1	0	0	0	2	0
ATCCGTGTATACCCAC	alt_5888_new	5	6	7	4	1	6	8	5	4	3
GCTGTACGGTCTGGGG	alt_5888_new	23	21	21	20	20	13	16	16	22	21
AAAGACCCACTGGGCT	alt_5888_new	12	10	11	4	10	12	10	2	12	13
TAGCACTCTGTTTGAT	alt_5888_new	32	46	22	28	43	21	36	18	55	29
ATGCAAATAGTGGGTA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TCGAAGCGCCCTGGAG	alt_5888_new	12	14	3	14	8	8	5	20	19	6
TGCCTGCTGTGACAGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GGGTCTCAATGCTCAA	alt_5888_new	22	18	18	12	16	14	11	13	19	7
CGGGCCAAGCTCAGCG	alt_5888_new	63	72	75	58	90	66	70	77	107	52
GACTTACTGCGCGCTG	alt_5888_new	21	21	18	19	44	11	32	13	43	23
CTCTTTTCTAGATGAT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCCACGACTCTAGAGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
ATAACAGTTAACGGTT	alt_5888_new	49	43	30	38	48	34	35	24	45	32
GGTGAGACTTTCAATT	alt_5888_new	120	174	147	126	171	121	168	121	190	110
ACACTCAGTCTTTACG	alt_5888_new	0	0	0	1	2	0	2	2	1	1
CAGACTTATTTGTCCC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GGTATTTCCGTTATTT	alt_5888_new	25	20	26	18	33	18	27	18	17	17
CGGATCATTGGTTGGT	alt_5888_new	17	11	11	21	34	11	24	22	33	12
CGCTCCTCACACTACC	alt_5888_new	1	2	0	2	3	0	0	0	1	6
ATTAAATTGCCCAGCT	alt_5888_new	18	15	15	8	27	24	26	10	18	17
TCTATTTCGATTTTTT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TAGACATTCGCGTAAC	alt_5888_new	23	30	25	26	36	24	48	22	40	25
TTGATCGCTGCGCTTT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GGACTTTCCAGTATTT	alt_5888_new	6	4	7	6	6	8	8	7	1	4
GTTTGGTTTGCAGCCG	alt_5888_new	16	18	18	7	24	11	23	9	21	11
AATATCATCCTGACAA	alt_5888_new	6	12	9	5	9	5	18	6	14	5
TACACTAAACCGCTCG	alt_5888_new	9	27	16	13	15	8	12	9	20	7
CTCCATGCTTCCCTCG	alt_5888_new	12	27	22	28	26	18	19	16	39	16
CGCCTCCGACGGATGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCAAGGTACACGACAA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TTTTTCCTTGTCCCCT	alt_5888_new	53	48	56	63	62	76	66	37	68	45
GTGATTACCCCCTTCC	alt_5888_new	33	37	39	39	49	24	32	18	45	28
CCTTGTCTACTACCGA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TCTATTCCCGTATCGG	alt_5888_new	3	1	2	0	1	0	0	1	1	1
TTTAGATTAGTAACTC	alt_5888_new	30	28	15	26	39	22	30	21	28	15
GCAATCTGGAATCTTA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCCGTCTATCTTCGTC	alt_5888_new	3	11	10	8	10	11	16	5	12	9
GTAACAGTTTAGGACC	alt_5888_new	11	20	17	12	23	16	14	14	20	15
AACGCTGCGCATTACG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TGTTACTCATGACTGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TACAGGTTAACTTGGC	alt_5888_new	30	32	21	23	26	21	24	23	41	23
TCGTACGGCATAATTC	alt_5888_new	5	5	4	3	3	1	3	2	1	2
CTTCGCTGCATTTTTC	alt_5888_new	13	12	22	8	12	15	9	6	18	6
ATTGCTAATTTGTCTT	alt_5888_new	13	13	24	11	10	13	12	21	11	11
AACTCGTGCGTTCCTA	alt_5888_new	3	2	6	7	5	2	5	4	8	6
TCACGCACTATTTTCG	alt_5888_new	3	11	15	12	13	3	8	4	9	10
GAGATTCCTGCTGTGT	alt_5888_new	18	16	15	20	22	11	23	15	19	17
ACTGACACTGAGGGTT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CGCTGGCGATCCGAGC	alt_5888_new	1	6	2	2	5	3	1	1	3	0
AGCTCTGCCATGATAT	alt_5888_new	3	10	10	6	6	4	18	7	7	3
GAAACTCTCTCGTCCC	alt_5888_new	25	35	34	24	30	30	45	16	38	21
CTAAATCCGCCGGGCA	alt_5888_new	24	37	35	27	40	27	25	31	38	25
AATCATGCCTATTCGT	alt_5888_new	1	7	6	6	11	5	8	4	9	6
TCATAACCGGTATCCA	alt_5888_new	59	66	67	69	90	38	98	54	72	51
CTTTCGATTCGGCTGA	alt_5888_new	91	103	86	67	121	78	113	92	129	65
GGGGGGCAGAAGATCA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCCTATATGATTCCAA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
ATGTCACACATTGGAC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CGTGACCTCCGAATCG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
AGATAGGGCGCATAAC	alt_5888_new	24	36	33	22	33	22	30	34	27	19
TTGTCGTGGCTGATGT	alt_5888_new	96	121	116	104	142	83	148	99	133	69
CTTCTGAGCCATTCCC	alt_5888_new	6	4	2	10	6	3	8	4	6	0
AACCTAATAACATAGA	alt_5888_new	89	112	116	108	113	114	115	83	103	86
TTATCGTTCTTCAACA	alt_5888_new	21	35	22	30	26	18	39	16	31	25
TTTTACACGCGCGTTT	alt_5888_new	35	33	45	29	71	24	38	37	71	40
TACTGAGTATTGCCTC	alt_5888_new	16	26	22	17	26	24	22	17	16	9
CTTGGCAATCCCAGGT	alt_5888_new	87	113	98	84	126	69	119	82	122	64
GAAGTCATGGGACAGG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
AGGTTATGCACGTACG	alt_5888_new	5	13	11	8	7	8	12	11	9	6
TCCGATGGTCTCAAGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TACCCACGAGCGCTGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CCGGCACTTTGCCGTC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GAGAGACAAAGACCCC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GTAGGCCCACTTCTAA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TTTAGCTGACTGTTCC	alt_5888_new	96	119	104	84	115	81	124	63	142	81
TCCCCCTGTAGAAATT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CTTTTTTCCCGTGTCC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TGTTGGAATATGAGCC	alt_5888_new	17	15	7	11	7	6	14	4	10	11
CGTACCTCCATCACTT	alt_5888_new	0	0	0	0	3	0	1	1	5	0
AGGCGGCAGGCAGTTT	alt_5888_new	49	53	76	49	62	46	69	28	68	38
TCCCGCGGATCGCTTA	alt_5888_new	17	6	12	11	15	11	6	4	13	7
AACGATGTTTTTCGGC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CAGGGTGGCTGTTAGA	alt_5888_new	24	18	19	11	16	12	12	13	8	7
TTGGATGGGGCATCAG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GTGCTCATTTTGGCGT	alt_5888_new	1	5	6	1	4	2	3	1	3	2
CGATTTGATGGCTGCT	alt_5888_new	19	22	19	17	20	12	20	22	16	10
CTTAGTCTAATTGCTA	alt_5888_new	30	63	32	38	49	28	78	28	48	33
GTTCAGGTGTACAATA	alt_5888_new	16	11	9	5	8	2	10	2	11	5
TTAGCTACTTCTCATA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCACGGGAGATTTACC	alt_5888_new	9	17	13	13	22	20	30	10	24	7
GCACCACGTCATTCCT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TCAAAGCGGATAAGCT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCCCAGTCTGGGGGGC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GCTGGTATAGATCGAT	alt_5888_new	17	22	22	20	18	16	24	21	29	21
ATATTCATTTAAAAGG	alt_5888_new	54	85	67	62	77	59	96	54	87	48
TATCGTTAACCGGTTA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
AGGAGCGTCCTTTTAT	alt_5888_new	10	7	8	2	3	2	6	8	8	8
GGCCAACGAAAGGAAA	alt_5888_new	0	0	0	0	0	0	0	0	0	0
AGACGCGTCAGGCCGC	alt_5888_new	0	0	1	0	0	0	0	0	0	0
CAGACCAACGTTCGTC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
TCTCTTAGTTCCGCGT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
ATTATCGGGTTGTGCT	alt_5888_new	0	0	0	0	0	0	0	0	0	0
CCGTGGCCGGGTGGAG	alt_5888_new	45	61	42	42	52	32	61	38	55	25
ATATCGACGGCCCCCG	alt_5888_new	45	48	42	35	48	24	39	38	51	40
TACATCTCCAGAACCT	alt_5888_new	4	10	7	2	10	2	5	0	6	1
GTTTTTCTTTTGCCAC	alt_5888_new	55	57	59	62	77	55	70	48	84	51
CTCTCCAATGTGATAG	alt_5888_new	9	10	13	9	11	9	17	8	13	7
CGTGTCAGACCTTGCT	alt_5888_new	4	6	12	3	10	5	4	8	7	2
GGTTTTAGTGAGTCCC	alt_5888_new	15	16	20	20	14	7	14	8	17	14
CAGGACTAAGTCTCCG	alt_5888_new	0	0	0	0	0	0	0	0	0	0
ATCTTTCGCGCGGGGT	alt_5888_new	1	8	6	4	7	5	5	4	4	5
TCAAGGCTACCGCGAG	alt_5888_new	7	7	10	4	18	10	8	12	6	8
GAGCGTTTTTCAGATC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
GGCTTGATCCCATGTG	alt_5888_new	9	7	9	11	12	3	9	10	6	6
TAATTATTAAGACAGC	alt_5888_new	73	75	78	64	109	77	105	90	88	68
CACCTTAAATTTGGGG	alt_5888_new	44	34	39	29	46	24	44	23	42	16
TTCCCCGGCCTGAGGC	alt_5888_new	0	0	0	0	0	0	0	0	0	0
ATCCCGACTATCTTGC	alt_5888_new	8	17	12	4	16	9	12	6	15	10
GACATGATGCTCATAA	alt_5888_new	9	8	7	6	8	4	6	5	9	3
ATGTATTCGTCTGTAT	alt_6089_new	3	8	5	2	8	3	14	7	6	3
AATTTGAACTCTGGTT	ref_6089_new	67	104	69	59	132	50	114	53	121	54
ACTTATGTATACGGTA	alt_6089_new	19	54	31	29	64	27	70	24	58	22
TTGCACCTGTTAGTTA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TTGGCATGTAGTCCGT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
CTTCTCGGCACCAGAG	alt_6089_new	0	0	0	0	0	0	0	0	0	0
ATGCCTTCCCGCTTTT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TGTATGGACGGCACTT	alt_6089_new	30	41	35	22	49	15	44	20	51	30
TTTACTGTAAGAGATT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TACCGCTATGTAAGCC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
GTCAGATTTCATAACA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GATACTCTTTTCCGGA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
CGCAACGCACCCACGA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GCAAATCTTGCCGAAT	alt_6089_new	16	18	5	17	17	5	15	6	15	12
CCTCAAGGTCGATAGC	alt_6089_new	5	13	3	3	13	1	4	0	6	2
CCCGTGTCCACGTAGG	alt_6089_new	22	54	41	41	57	39	75	28	74	29
TCGGCCTAACAACGCA	alt_6089_new	16	41	32	15	49	10	47	8	38	17
GTTCAGTATTGTTCGG	ref_6089_new	0	0	0	0	0	0	0	0	0	0
TTCCGATTAAACAACA	alt_6089_new	36	75	58	42	79	57	98	32	97	53
TGATCCGGCATTAATA	alt_6089_new	22	48	29	37	48	14	56	24	52	27
TAAAAGGAGTTAGGTG	alt_6089_new	34	76	39	20	61	35	56	27	69	23
TACTGTTGGACCCTGA	alt_6089_new	0	1	0	0	0	0	0	0	0	1
GCGGCAAAGTTATTTA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
CGTTGTTCCTTCACCT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
AACGTCTTGGTCTAGT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TGGTATGTATTCGATT	alt_6089_new	11	20	14	12	16	11	21	10	15	15
GCGATGCCTGTTATGA	alt_6089_new	2	5	3	0	2	2	1	1	5	0
AGAATCAAGGCTATCA	alt_6089_new	11	19	9	11	13	6	16	10	22	8
AGCTTCGGCACACTGC	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TGTCCGTGTCCTATTA	alt_6089_new	0	4	1	1	7	5	1	3	2	0
TTAAGAGTTGCGTCAC	alt_6089_new	18	36	32	43	30	32	40	31	43	20
GATATTTGATAATTCA	alt_6089_new	29	58	22	26	51	32	50	34	43	23
CATCGCGTTTGATAGA	alt_6089_new	18	31	18	20	20	20	29	9	38	13
GTGTAGTTCAGTACTC	alt_6089_new	0	0	0	0	0	0	0	0	0	0
ATCCAACACGACATGA	alt_6089_new	28	38	34	23	44	20	42	26	45	15
GACATGTTACTCCTTT	ref_6089_new	31	104	60	45	79	53	112	44	112	44
CTTCTATATTTTCGCG	alt_6089_new	13	32	27	19	25	16	32	20	25	14
CGCAGTCTCATATATA	alt_6089_new	34	37	39	32	33	21	38	12	52	15
TGGAGGTGTGCAGCAT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TCATACTGTGGCCCGA	alt_6089_new	5	5	14	12	13	5	19	10	16	4
TCAATGTTCGTTTCTC	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TATAGAAGTATCGTTG	alt_6089_new	21	48	40	25	50	28	41	27	50	28
GGTGCTTCAGTGACAG	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GCTATACCTGCAACGC	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TCGGTTAAGATCTACA	alt_6089_new	7	8	7	12	13	8	22	8	12	3
TTCCCATTCGACCCAT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TACCGGTTCCGTTTTC	alt_6089_new	3	7	2	2	15	6	8	0	18	5
GAAAGTGAACGATCAG	alt_6089_new	30	44	36	45	57	25	44	15	49	17
AACTAGAATGGGACAA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GATTATTACCAAACCA	alt_6089_new	11	39	26	12	28	13	30	18	47	25
AAAATATCGTTCAGCA	alt_6089_new	10	29	17	15	26	5	17	4	24	6
TGTTCATCAGCCGTCT	alt_6089_new	2	3	2	0	8	3	5	3	1	0
TGGCTCGTTGTACCAA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TAATTAAGTCTATGTT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
CTATGTTCTCATGGTT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GGCATATGTCGTTGGC	alt_6089_new	0	0	0	0	0	0	0	0	0	0
CTGTGGTCTGATGGCA	alt_6089_new	17	39	35	24	35	18	38	23	33	30
GACCCCTCCGGATCAC	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TCGTGGGTTGGCCAGC	alt_6089_new	9	4	7	5	11	6	14	5	9	6
GGTTACCCTGCCATTA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GTTATGGCTTTCTCCC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
TCCCGGGCTACGGAGT	alt_6089_new	21	87	36	39	59	27	54	24	72	22
TGAATTTGGCTTAGAT	alt_6089_new	20	39	26	23	39	19	28	18	39	19
AAGAAATACACAGATG	alt_6089_new	17	31	23	20	34	17	28	16	21	17
CCGGTGAGTTTGTTTT	alt_6089_new	24	48	41	23	60	31	59	30	71	33
GTTTTAATTGGTTGTT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
ACTTATCCGATTTTCA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
ATCCGATTAAACAACA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
ATATTTCATGTAGCGG	alt_6089_new	23	41	27	24	35	20	29	18	57	20
ATTCCCTCCTTGTCTG	alt_6089_new	13	19	26	13	38	7	29	13	26	10
TGGTTTATATTGAGCG	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TGTATAACGCATCGGC	alt_6089_new	0	0	0	0	0	0	0	0	0	0
TTGCGTCTTGTGGTTT	alt_6089_new	38	68	43	30	69	28	76	33	79	31
TAAGCTCCCCGAAGTA	alt_6089_new	0	0	0	0	0	0	0	0	0	0
ATTGATACTGCCTCAT	ref_6089_new	172	322	206	175	336	176	356	164	361	140
CCGGCTTCTTGCTGGG	alt_6089_new	1	19	16	12	17	7	21	7	22	9
TACATGATATCTTTTC	alt_6089_new	3	4	2	2	2	2	2	2	6	2
CCCTGTTCCATATCAG	alt_6089_new	3	3	5	3	4	1	2	0	4	1
AGCGTTTCACTGTCCT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GAGAATTCATCCTGTA	alt_6089_new	2	5	0	3	1	4	7	3	2	2
TGATAAAAGCGACTGG	alt_6089_new	1	0	0	0	0	0	1	0	0	0
AAACTTGCCGTATGTT	alt_6089_new	7	13	10	6	10	11	14	8	22	7
CCGGTATTATGTTTGG	alt_6089_new	54	227	88	86	247	71	260	55	240	61
ATGCAATCTCGCGTTG	alt_6089_new	16	29	17	12	28	12	20	17	26	17
GCGCCCACGAGGGGAC	alt_6089_new	6	12	16	8	37	19	18	7	34	3
ACTGTCACCATTATGT	alt_6089_new	18	24	14	18	26	7	23	10	28	9
TAGGCTGGATTGTCAT	alt_6089_new	24	37	10	22	33	21	36	20	48	21
GTGAGCATACAATATT	alt_6089_new	9	28	8	11	15	8	25	10	22	7
AGAGTGGATCGTGTTG	alt_6089_new	39	59	16	27	64	25	59	32	77	42
ACTGCTCGTTGCCGTC	alt_6089_new	22	27	16	21	45	26	47	17	42	17
TGGTGTGCCTTGTGGT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
CTATATTATGGGGCCG	alt_6089_new	15	20	9	7	7	3	18	8	12	9
AAGAACCTCCTCAGAG	alt_6089_new	25	60	27	37	51	39	56	31	80	28
TCTTACCAATATTTGA	alt_6089_new	19	50	30	47	66	16	75	13	74	22
CAATCCAATTATGCTT	alt_6089_new	69	91	59	71	104	49	120	53	109	54
GTGTTTACACGTCCGA	alt_6089_new	0	2	0	0	3	0	1	0	0	0
ATCGTTGCGTGTCCCC	alt_6089_new	13	30	23	26	33	19	42	23	36	12
GGCGCTCGAATTTATT	alt_6089_new	23	37	25	10	26	21	37	14	23	24
CTTGGTGGACGGATCG	alt_6089_new	0	0	0	0	0	0	0	0	0	0
ATCGACAAACCCGATC	alt_6089_new	16	43	28	31	43	9	25	23	40	18
GCCAGCCCTCTAATTC	alt_6089_new	5	12	6	2	16	3	29	4	17	9
CATTTAGTTATTTGAC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
GGATTCAACCTCATAA	alt_6089_new	5	14	7	6	16	9	11	7	11	3
TGCTGCGGGTTCACTG	alt_6089_new	42	58	41	32	62	46	49	25	66	30
ATGGTGTGGGTTTAGC	alt_6089_new	77	143	101	74	135	68	155	73	179	74
TACCGGCTATCGATAT	alt_6089_new	19	34	14	12	47	5	38	8	41	5
CGTCCTAGAAGTAGTC	alt_6089_new	5	5	3	4	9	2	10	1	10	4
GCGTTTAATCAATTGC	alt_6089_new	5	6	4	1	3	0	8	1	9	4
CGAGTACTCACGTGAG	alt_6089_new	0	0	0	0	0	0	0	0	0	0
GAGCCGAATGCTGGCT	alt_6089_new	24	23	6	15	27	19	31	14	28	15
AGCTTGGTCCTTTCTT	alt_6089_new	0	0	0	0	0	0	0	0	0	0
CTGTCAGCTTCTCGGG	alt_6089_new	6	12	1	3	9	4	9	2	11	5
GTTGGAATGGGATAAT	alt_6089_new	212	442	261	238	401	191	386	203	475	172
TGAGAACGATCGCTCT	alt_6089_new	108	202	137	111	175	103	197	110	224	88
ACCTCTGTTAGCGTGG	alt_378_reverse	2	1	5	4	2	4	4	1	2	5
CTCGAGTGTATACTAG	alt_378_reverse	14	28	29	11	22	27	24	22	31	20
CCTTATACGAACGTGT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGTGAAGTCACAG	alt_378_reverse	21	27	16	13	17	11	16	10	20	13
TTCGACGACCGGGTTA	alt_378_reverse	47	61	55	60	80	55	79	53	82	46
GTCCCGCCTCATGGCA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTAGTCTTGCTAT	alt_378_reverse	47	59	41	56	70	56	64	49	67	54
TTTATTACTAGGAGGC	alt_378_reverse	7	9	6	15	7	6	6	8	12	13
CGCTAGCTGCTTCCTT	alt_378_reverse	31	43	39	25	25	30	37	25	33	30
TACGGGAAATACGGGG	alt_378_reverse	114	130	182	121	119	131	143	99	148	120
GATATTATGTTTTGCG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTAAATGGTCGG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTGATGCTCCGGC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GATGTCCCTCCCGTAT	alt_378_reverse	22	17	18	20	24	13	11	7	19	24
GTTGCCGTGGATGTCA	alt_378_reverse	19	35	21	26	35	31	26	21	33	21
CTCGAGGTATGGCTCA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTACCAGATCCCCCAT	alt_378_reverse	11	12	21	12	14	5	5	9	12	12
AATCTTTGCATCAGGT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCGGCAGATTATA	alt_378_reverse	26	23	27	29	31	11	35	17	31	30
CCGTCTGGGTCGTGCA	alt_378_reverse	101	135	149	125	174	100	178	94	163	92
TCACGCCGTAGCCGTC	alt_378_reverse	115	152	171	141	159	119	165	92	189	120
TCATACGAAATCAATT	alt_378_reverse	11	12	20	10	12	21	15	12	18	8
CTTAAAGGTCGCTGCA	alt_378_reverse	7	5	9	7	6	5	11	5	17	8
TTTTATACCCGTATTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTTTTCGATTCAT	alt_378_reverse	29	54	46	44	39	42	42	27	49	41
TGTTATCTTTGCACCA	alt_378_reverse	6	6	8	10	8	10	17	16	15	8
GAGATGGTGTCCTCCT	alt_378_reverse	85	89	64	84	86	83	101	74	89	84
CATGTCCCTAACTTTC	alt_378_reverse	18	15	26	12	26	20	41	27	35	19
CCGGGCCGGCCTGATT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGGCTTGTAGAGA	alt_378_reverse	119	124	156	128	188	108	166	119	163	118
CCCATGTGCGATCAGC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CTTATGCCTTTTAGAT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CATCCTACCTCTCTTC	alt_378_reverse	146	171	170	163	206	139	232	162	195	121
CTTAAACTTCTTTAGC	alt_378_reverse	62	85	98	56	106	70	88	75	84	65
AATTTTCGCTCAGTCC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CGATGCACATGGATTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCAAGGGTACATG	alt_378_reverse	21	41	29	34	37	21	40	25	35	28
TCTCGTTGCCACCTCG	alt_378_reverse	16	23	26	17	23	18	14	33	28	20
AACCATCGCTCTCCCA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTATTATTTGTTGATG	alt_378_reverse	37	36	54	54	44	35	47	37	49	46
GCTTTTATTTTACCTG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GGTAGGCTCTTTTTGG	alt_378_reverse	91	112	122	78	133	98	99	80	110	66
TCTGGAACTGGCTCTT	alt_378_reverse	7	17	27	28	22	22	13	19	35	11
GTGGTAACGACGATGT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CCGATACCTCATTTTC	alt_378_reverse	2	8	3	3	8	5	4	2	3	3
GTTCAAATATTTCCCG	alt_378_reverse	115	97	129	90	108	82	96	88	107	88
GGTGGATGCCGCGCAA	alt_378_reverse	11	10	7	4	8	5	10	6	10	11
ATGTGGAGTTTCTGAA	alt_378_reverse	58	64	100	78	81	76	95	83	92	72
GGTCCAATTCATTTGA	alt_378_reverse	22	42	56	46	58	51	44	36	40	41
CTATTTTACTAGGTAT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGAAGTGAAGTAT	alt_378_reverse	13	7	4	6	15	7	14	9	11	13
TTACCGGGAAAGTGCT	alt_378_reverse	28	49	30	19	46	15	61	17	39	19
ACTGGAGCCTCAATGC	alt_378_reverse	18	24	19	16	20	16	17	11	25	4
TCCCCGACGGCTTTAC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GCATAACCCCTGAGGT	alt_378_reverse	0	0	2	2	3	1	2	1	2	4
CAAAGCTGATACATCC	alt_378_reverse	38	56	59	46	56	37	48	39	51	41
CGGTAACAGATTGCCG	alt_378_reverse	11	12	5	7	9	9	10	7	6	2
CAATTCTTTGCGTTAA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GAACGTGGGTAGTTTT	alt_378_reverse	3	1	5	3	1	1	2	0	4	1
TCTTCGAAGGAGTTCG	alt_378_reverse	18	11	20	14	21	17	17	13	16	4
GTCTTTTGACCGGTAA	alt_378_reverse	40	48	39	27	45	37	44	30	37	34
TCCCGACAATTTATAT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CGTACGGTAACGGTCT	alt_378_reverse	7	6	9	8	7	10	9	8	11	9
GATAGGATGCGCTAGG	alt_378_reverse	12	15	9	11	30	12	16	6	24	10
GACGTTCGTTTCCGTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TATCTGCCGCAACCTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGCTCGATTCCTG	alt_378_reverse	2	1	1	1	0	0	1	2	0	0
TCCTTTTTAATTCGCG	alt_378_reverse	11	15	13	21	24	20	17	15	24	19
CATCGTTTGGTTCCAG	alt_378_reverse	23	29	25	18	28	13	21	24	30	12
CGATGTGCGGCTAGCT	alt_378_reverse	13	21	42	28	16	21	15	24	19	26
TTGATTACTGCCGCAG	alt_378_reverse	25	30	25	33	28	31	45	35	39	32
ACGTAGCATATTCTAG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTACAGTAACAAC	alt_378_reverse	36	51	41	36	53	39	72	33	38	39
ATTAGCTGAGTATCAT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTTCTTGTCAGGT	alt_378_reverse	18	20	21	21	24	10	19	19	13	17
TTCTAATCGTGGCTGC	alt_378_reverse	2	1	9	1	5	2	5	3	1	9
CCGTTAGTAAGTTGAT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGTCATGGCCACA	alt_378_reverse	40	38	66	46	48	35	39	34	58	46
TTCCGGATACTGTGTT	alt_378_reverse	25	35	31	15	35	34	28	27	32	33
GTTATTACTACGGAAT	alt_378_reverse	4	2	4	9	9	1	5	5	4	4
CTCTCTGGCGGAACCT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
AACGTTTATGTTTACC	alt_378_reverse	19	26	32	18	24	24	17	33	35	22
CAAGGGAAAGGCCTTC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CATTACATTGTGTTTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GTACAATGGCAGGGGC	alt_378_reverse	4	16	12	9	21	12	21	11	14	13
TGGTCAGAGTTGTGAC	alt_378_reverse	24	23	34	29	31	19	31	21	29	20
TTAACGATACCTAAGA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
ACACGTATGGAGGTAT	alt_378_reverse	13	17	17	20	25	11	17	17	25	14
TATTTCACTGCGTTTT	alt_378_reverse	39	43	46	40	46	38	55	34	31	32
ATGTCACGATGGATCC	alt_378_reverse	204	179	253	219	212	202	220	188	204	209
CCCAGACACTCTTTCG	alt_378_reverse	28	46	46	41	61	26	59	31	58	25
ACTAGTTGGACCTTGC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CAAGACTGTCGCGATT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTGTGCTAAGGCT	alt_378_reverse	10	14	13	13	16	15	15	20	14	21
TCGCAATAACATATGT	alt_378_reverse	37	46	41	56	50	42	48	44	46	41
GCAGCCCGTTACGCCT	alt_378_reverse	5	22	5	9	25	5	22	6	15	5
ATTTATACCCGTATTT	alt_378_reverse	63	54	85	57	65	71	73	47	66	63
TTCCGTTCGACACAGA	alt_378_reverse	17	20	11	16	27	18	7	12	26	19
TCGGGTGCCTTGAAGA	alt_378_reverse	35	32	48	43	31	31	44	30	56	41
ACCATGCGAAATCCGC	alt_378_reverse	6	4	3	7	3	2	5	10	4	9
GTCGTCCTTGACGTTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCGTGCGCCCGT	alt_378_reverse	27	34	28	21	15	34	31	14	21	21
ATTTCGATAACTTAGA	alt_378_reverse	24	23	16	25	45	10	27	21	25	19
CCAATGCCGTGTTAGG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTACGAAGTTGA	alt_378_reverse	13	34	30	23	30	16	20	26	26	13
CCTCTAAGTACAATTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CACACGGATCCGACCA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGTGGTCCAGCAA	alt_378_reverse	5	10	7	7	14	9	10	13	6	11
GCGCATCAGCTTTTCT	alt_378_reverse	40	44	33	45	49	24	32	34	46	27
TCGCCGTCAATTTGGC	alt_378_reverse	25	38	22	16	32	19	25	23	24	22
TAGGAGATGTGGAATG	alt_378_reverse	67	86	68	67	57	68	75	69	71	59
ACAGGTCTTTATTTTC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
AATTTTTCGGTCCAGG	alt_378_reverse	21	25	35	25	23	28	32	18	37	17
CTGTCTGTCCCTCTGT	alt_378_reverse	1	1	0	1	0	0	0	2	0	0
TTCTTATGGTACTGAG	alt_378_reverse	28	35	51	26	41	25	45	44	46	30
CTCTCTTTCCACTAGT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAGAGCTATGAGC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTAACCCTTCAAT	alt_378_reverse	2	6	3	0	3	2	1	2	0	0
GTTCCCTTAATTACAT	alt_378_reverse	66	87	95	79	78	55	95	71	75	39
TTGCAAGGACTATAAT	alt_378_reverse	4	2	4	4	4	2	0	2	5	1
CGTTGTCTCGATCGTT	alt_378_reverse	21	32	29	21	17	14	28	20	29	15
CTCTATTATCATTTTG	alt_378_reverse	124	134	137	133	147	106	123	116	126	109
TGTCATCATCTCACGG	alt_378_reverse	178	223	227	182	203	167	222	149	237	176
TCAATACATGCCAATG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGGTAAAGGCTCA	alt_378_reverse	25	37	44	39	51	34	47	36	39	24
TTGACTTTTCAGTAAG	alt_378_reverse	0	1	0	0	3	0	1	0	3	0
CCGTCAGACGTTTATT	alt_378_reverse	12	8	17	10	25	11	14	7	16	8
CAATAGATTCAGGCGT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TCAAAAAACTTCCACC	alt_378_reverse	13	6	6	3	8	13	14	13	17	3
TAGATTGCTCGTTCCT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CATCTGCAATATAAGG	alt_378_reverse	24	39	31	24	44	31	30	18	42	28
CTGCTTCTTAGCCTGA	alt_378_reverse	40	66	57	61	60	59	64	46	51	47
AGTTTCCCCCCGGTCA	alt_378_reverse	7	29	11	3	27	12	18	4	16	5
CTCCAAATGGAGCGGC	alt_378_reverse	24	32	32	20	24	9	23	16	35	22
CGGCGGTCAGCTTGTC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCCAACCAGGAG	alt_378_reverse	151	170	189	165	179	136	193	138	196	152
AATCGTGGACATGAAC	alt_378_reverse	70	80	85	72	73	94	93	60	84	63
TTCAGTCTTCTGGTAT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCTCCATTACAGG	alt_378_reverse	12	6	8	7	5	11	9	9	10	8
GTTCTCTATGCAAGAC	alt_378_reverse	0	0	2	1	0	2	1	1	0	1
ATTCCTTAACTAGCGT	alt_378_reverse	12	28	17	12	18	18	20	14	24	9
TCATCATTTCGTCCGT	alt_378_reverse	52	60	33	42	50	45	60	28	46	41
GCTTCTCTATTAACAT	alt_378_reverse	137	195	170	203	205	137	186	126	229	168
TTAACCGGTTTTTTGA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TAGTATTCTTCGGGTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TCCACGATTTCAACGC	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CATCCGTGTCATTAGG	alt_378_reverse	36	84	68	68	81	59	83	61	75	57
TTGAGAGTTTCATTTG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGTTGGGGCTTGG	alt_378_reverse	36	38	30	42	36	35	32	34	32	22
GCCACATCTGGGTACA	alt_378_reverse	48	57	66	54	72	47	70	51	65	47
CGCCTATCAAAGTCTA	alt_378_reverse	83	119	98	107	122	74	116	72	145	76
CTAACCGAAAGTCTGT	alt_378_reverse	15	15	14	5	13	11	11	14	12	14
GTGTACTTGACCGACA	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
CGCGATAATAGCAGCG	alt_378_reverse	23	21	31	22	25	18	25	23	18	20
ACGAATTTGCATCAGG	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGACATACAACTT	alt_378_reverse	4	16	13	9	15	12	19	14	9	4
TTTTTCAAGGATATTG	alt_378_reverse	5	12	5	9	9	13	13	11	15	8
GTATCTAGATGTTTTT	alt_378_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCCGATTAAAGAG	alt_378_reverse	44	54	51	50	56	46	51	48	49	41
TGAGGGACGGTTGGTT	alt_378_reverse	6	9	10	7	12	4	15	10	7	6
CTTGTATAGTGAGAAT	ref_1687_reverse	52	77	55	68	82	57	70	50	64	40
CTTGTCAATGGTCCAC	ref_1687_reverse	9	15	17	10	11	12	15	7	12	8
GCTTGAATGTTTTATC	ref_1687_reverse	13	31	28	19	37	14	30	21	33	14
CCTTCTCAGAATAGCG	ref_1687_reverse	4	5	4	2	4	2	3	2	6	0
ACAACTTGGTTTCTTC	ref_1687_reverse	44	53	50	42	64	52	55	43	47	34
CCAGGGAGTTTTCATC	ref_1687_reverse	40	71	50	59	78	40	77	41	83	28
GCCCCTACTTTGGCTG	ref_1687_reverse	61	76	85	84	63	44	83	50	72	63
AATAAGCCTGTTCCTT	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTTCCAGTGATCG	ref_1687_reverse	125	131	153	135	142	105	145	106	146	90
TAAGTTCCATCACATA	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
TATAAGGAGCAATTAC	ref_1687_reverse	62	55	85	59	65	56	76	65	78	60
TCACGGGTGGGGATAA	ref_1687_reverse	87	67	108	97	126	68	95	74	111	97
AATCTTGGCACATTTC	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
GCACCCGTTGGAATTT	ref_1687_reverse	25	23	23	31	26	13	21	24	25	13
CGGTTTACGTATACTG	alt_1687_reverse	87	104	99	96	111	72	123	66	134	80
GGAGTACATATAGTTT	ref_1687_reverse	6	6	7	6	7	5	8	5	8	4
CTCTCATATCCATACT	ref_1687_reverse	3	3	4	1	2	1	0	0	2	2
TGCTCTTTCCGATCTT	ref_1687_reverse	20	18	14	11	19	19	15	17	13	9
TTGCACTTGTTCTCGA	ref_1687_reverse	32	40	35	40	48	31	59	35	47	21
GGTACTAGCTCACGGT	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCTGGCGGTCCTC	alt_1687_reverse	37	37	47	44	29	46	40	33	58	34
GACTTGGGCGTTGAAA	ref_1687_reverse	37	39	44	42	51	28	36	32	56	29
CCATACCACAAATCTG	ref_1687_reverse	141	217	192	150	213	138	234	123	241	122
GGCACTCTCTTGGGAA	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
GCCAACCGTGTGGTGT	ref_1687_reverse	18	66	15	28	44	13	55	17	65	14
GGAGTATGGACTACGG	ref_1687_reverse	6	8	0	7	9	5	8	4	7	6
ATTCAAAACTCTTTTG	ref_1687_reverse	45	69	44	43	66	36	62	42	52	44
AGGTCTTCCCTGCAAA	ref_1687_reverse	259	296	349	271	272	245	319	233	334	247
GGACTAATTCGATTGT	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTGTTGCTTGAC	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGTTCTTCTCGCA	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAATTTCTATTTG	ref_1687_reverse	10	21	21	18	22	11	26	17	17	12
ATTACTAGCACAGGAT	ref_1687_reverse	0	3	2	2	1	0	0	0	0	0
AATTTGTGCGTCTGAG	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGCCCCATGGGAA	ref_1687_reverse	115	81	131	102	99	88	76	68	125	100
TCAAAGTCCGCTTGGC	ref_1687_reverse	57	76	58	49	78	53	78	50	80	51
ATTGTCGTTCCTGGAG	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGATTCGACGCAA	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCTGTTTAAAAAA	ref_1687_reverse	17	32	12	19	29	22	26	16	22	21
GCTCAGATTGCATTTA	ref_1687_reverse	29	31	23	27	36	17	40	19	37	29
TGGCGAAGTTTAAGTC	ref_1687_reverse	26	20	29	26	16	26	25	17	15	17
AATGGACCCTGATTTT	ref_1687_reverse	8	12	19	7	13	14	11	12	14	13
GCCGATGTTTGCTAAC	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGACATGAACAGC	ref_1687_reverse	83	81	105	83	101	69	96	63	89	54
CGAATCGGCGTTGACA	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTCTACATTTATC	ref_1687_reverse	104	195	149	113	196	109	232	113	186	100
AAATGGAACCATGGTG	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTGAGGATTAGAT	ref_1687_reverse	29	43	38	45	48	40	45	29	65	23
AATAGTCCTAATTCTT	ref_1687_reverse	29	45	35	25	28	24	35	33	43	22
AATCCAGGAGCTTTTT	ref_1687_reverse	175	182	205	161	216	180	218	174	215	153
TTGTTCTTACTTCCCT	alt_1687_reverse	34	34	47	51	45	46	50	47	43	39
TCCGATTATGCGGTCG	ref_1687_reverse	84	77	75	87	95	72	96	72	82	80
GAAGAGGTAGGTACTA	ref_1687_reverse	28	35	25	33	27	22	31	32	30	20
TTTTAATTCCAGTAAT	ref_1687_reverse	1	4	4	4	4	1	0	4	8	4
ATATAAGTAATAGCTT	ref_1687_reverse	46	50	54	43	45	51	52	37	60	34
TTATTCGCTCATTTGT	ref_1687_reverse	66	57	58	54	42	53	49	50	44	27
AGACGCGTGAGTCAGC	ref_1687_reverse	0	0	0	0	0	0	0	0	0	0
TTAGATGAGTACCATG	alt_3943_reverse	22	19	39	28	19	29	17	35	21	29
GACCCCGCGTGCTGGC	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCAGCCGGGTGAT	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CACGTTCAATTGGTCG	alt_3943_reverse	136	77	151	127	89	114	77	107	82	113
TCCATATCACCGCCAC	alt_3943_reverse	102	66	125	106	59	88	57	80	63	86
AACCACGTCTTCCAAT	alt_3943_reverse	5	1	2	5	9	8	2	6	6	5
CTCAGCCGGTTTTCTT	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CCAACGCTGGAAAGCC	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TAATTCTAATCCTTCC	alt_3943_reverse	34	25	43	29	24	35	31	32	26	36
CCTCTCGGTTGCACGG	alt_3943_reverse	80	73	133	93	75	98	82	113	84	88
TAACGAAATGCTCTTT	alt_3943_reverse	52	25	75	50	29	48	40	54	24	59
TCATACATGTCTCTTC	alt_3943_reverse	17	13	35	36	12	27	20	26	19	33
TTTTTGCTCTGTCTTA	alt_3943_reverse	60	48	88	74	38	74	50	62	46	59
TGCGCGTCTCAAGCCT	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTTTCTGTATTGA	alt_3943_reverse	11	5	4	7	3	5	7	10	6	7
CGGCCTGTATACGTCA	alt_3943_reverse	8	3	7	10	4	2	2	6	3	5
AAAACTGCAATGCAGC	alt_3943_reverse	12	15	31	15	17	13	16	16	15	15
ACTACCTTGCAGAGTA	alt_3943_reverse	11	10	8	12	7	6	4	7	12	5
ATACGGTAGAGCAGAA	alt_3943_reverse	71	36	76	70	27	39	41	63	40	63
TACTCCTCCTGCACGC	alt_3943_reverse	2	0	0	0	1	0	0	0	0	0
ACGGCTTCGTGGTCGT	alt_3943_reverse	124	90	158	173	101	135	103	132	110	134
AATAAAGGGGTGGATT	alt_3943_reverse	9	9	20	12	7	6	11	12	7	14
GATGAAGATTGCTCAG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCCGTGGGTGGTG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
AACTTCCGCCAAATTC	alt_3943_reverse	208	116	241	179	133	189	102	160	109	161
AGTGTAGGGCACTCCC	alt_3943_reverse	10	11	5	3	4	9	9	12	12	6
CTTGTGATCACACCCG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCGGACAGATACC	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
GGTTACGATTTTTCTT	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
GTGAAGCTGTATCGTC	alt_3943_reverse	94	62	95	104	59	92	74	78	49	73
ACAGCGAAGTGTTTTG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
AACCGCTCTAACTGTG	alt_3943_reverse	31	54	35	32	53	18	55	29	61	34
CCTCACTATCGTCCTA	alt_3943_reverse	25	25	33	28	21	31	24	20	15	25
GGAATCTTCCTGAGAG	alt_3943_reverse	45	39	55	35	18	48	28	39	42	35
TCTACTTAGGATTTGT	alt_3943_reverse	79	59	72	80	52	53	57	62	59	56
CTAGTTCACATTCGGC	alt_3943_reverse	67	51	87	88	48	67	51	83	62	70
ATGAAATAAACGTGAC	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CCTAATGCCGTATATC	alt_3943_reverse	50	26	53	49	28	42	42	61	33	45
TGAAGCATGTGAGAGA	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
ATTATTGAGGGATCAT	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGCTCTCAGAAGA	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TGGTACTGACGGAAGC	alt_3943_reverse	154	75	204	151	101	144	118	148	118	154
CTCATTGCACGGCATC	alt_3943_reverse	41	29	52	54	31	45	23	29	22	27
TACTGACACTTGCACT	alt_3943_reverse	109	88	139	130	73	108	68	98	84	85
GCGAACGTCCACGTAG	alt_3943_reverse	25	18	30	11	18	26	10	26	21	21
GTAAAAGTATGTATCC	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTATGACATTGG	alt_3943_reverse	48	40	60	43	43	40	37	53	37	46
ATCCTTCGCAGTCAAA	alt_3943_reverse	95	82	105	103	78	107	82	87	75	80
TCAGTGGCTCCTATAA	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTACTGAAGCCTG	alt_3943_reverse	93	66	84	77	74	73	93	74	98	73
TGGTCACGCCTCAACC	alt_3943_reverse	65	51	85	69	54	67	43	75	48	62
TGAACTGTTGTCTTCA	alt_3943_reverse	38	28	42	45	36	37	19	42	43	39
CTTTTCGGATCTAATG	alt_3943_reverse	54	53	77	60	52	66	45	53	50	42
AGTGAAAGAATATTTC	alt_3943_reverse	125	74	138	125	82	109	74	106	103	106
CATCCCATCGATTGTT	alt_3943_reverse	24	18	29	33	30	31	31	34	34	23
TACCACGTGGATATAT	alt_3943_reverse	43	27	65	53	37	41	32	30	34	43
AAGCATCGCTCAGAGG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGTGAGTTCTTGG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCTCGCAAGCAT	alt_3943_reverse	20	21	22	19	14	16	7	13	15	9
TAGGGTAAGTTCTATA	alt_3943_reverse	231	208	363	297	223	275	192	285	207	269
CGGACTGGGGGGGAAA	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCTTTCCTTCCTC	alt_3943_reverse	87	48	112	109	56	84	50	101	55	86
GGTGAGTCAGGTTGAG	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGTCTGCGCTAGT	alt_3943_reverse	13	7	13	10	9	8	3	12	5	5
CCATACTCACGTCTGC	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TCGTAATCTTTAGTGT	alt_3943_reverse	0	0	0	0	0	0	1	0	0	0
GTTAGTGTTCATCATC	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
AATGATCTCGCCTCTG	alt_3943_reverse	86	51	114	92	56	82	49	67	67	101
TTGATGTAACTCATTA	alt_3943_reverse	0	0	0	0	0	0	0	0	0	0
TACTGTTTATTTTGCT	alt_3943_reverse	12	2	7	5	8	3	10	4	1	7
GCGGTCAGGGGTCTCG	ref_6077_new	0	0	0	0	0	0	0	0	0	0
ATTTTTTGCCAGCGCG	ref_6077_new	7	10	12	2	11	2	18	10	17	9
TCTTACATCGGGCCTT	ref_6077_new	12	7	10	8	7	8	4	6	10	8
CTCGGGACGGATTCAA	ref_6077_new	28	41	60	55	39	56	46	56	42	41
TGAGCAAGTTTGGCGA	ref_6077_new	46	81	80	53	50	65	69	48	74	51
ATACAAAGGGAGCGCA	ref_6077_new	12	16	27	16	17	15	18	15	14	17
AGTCCACAACAGCAAT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
ACCAGCCCCGGTTGTA	ref_6077_new	0	0	0	0	0	0	0	0	0	0
TGGAGTTTGAGGCGTC	ref_6077_new	24	33	33	35	14	28	32	19	32	26
TTCGTTTTCAGCTATG	ref_6077_new	27	18	42	32	37	31	30	38	39	27
TTGGATTATTCGAATT	ref_6077_new	29	51	31	36	32	42	32	40	29	19
AAAAGGTGTACGTGTT	ref_6077_new	28	27	38	22	43	32	37	19	27	23
CTTCCGTGTACAAGTC	ref_6077_new	32	26	28	32	30	28	30	31	19	22
TGCTACCAAACCCTTT	ref_6077_new	9	12	11	15	19	7	19	21	24	12
TACGTATTTCGCTGGG	ref_6077_new	16	11	18	14	15	11	12	4	12	8
TCCCCTGTGCTATGGT	ref_6077_new	9	5	3	8	13	4	3	7	23	5
TCTAGAACGGGGTGGT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
AGTTCTTATGTAAGAT	ref_6077_new	37	54	47	39	47	48	62	38	66	41
TGTTAGTATTGGTCAG	ref_6077_new	21	11	20	15	12	14	18	16	25	16
TTGTCGCTCTCGGCTA	ref_6077_new	50	42	75	46	49	59	43	37	52	43
TATCGTCACCTCCGCA	ref_6077_new	18	16	27	28	18	19	20	32	18	23
TTTTATCTCGAGTATT	ref_6077_new	11	11	14	15	11	5	19	6	12	12
TACTCCTGGACCTTTC	ref_6077_new	0	0	0	0	0	0	0	0	0	0
TCCGAATGTCACGATC	ref_6077_new	6	4	1	5	6	6	8	2	1	1
ATCTCCGGAATACGTA	ref_6077_new	27	21	27	25	22	27	38	22	35	22
CGCACCCGTGCAATCA	ref_6077_new	0	0	0	0	0	0	0	0	0	0
GTGTGATGGTATGTTT	ref_6077_new	9	7	12	13	13	4	13	10	4	11
GGAGACCTCCGCATCC	ref_6077_new	61	40	52	45	38	52	46	42	44	44
TAGTGGACTTTTTTGT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
ATCGGTTCAACGTTCT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
TAAGTACATGGTGTAT	ref_6077_new	7	4	8	3	4	1	5	6	6	2
GCCGAACCGTAGATGT	ref_6077_new	12	20	19	16	17	9	24	16	14	19
TATCGGTCCTTGGTAA	ref_6077_new	22	33	37	32	34	26	33	37	39	18
ATCATCTTCTTCCGCG	ref_6077_new	5	4	2	1	0	2	3	4	5	4
AAAGTCTCTGTTCCGA	ref_6077_new	35	19	23	14	19	24	18	32	22	19
TCACTGGTACTCTTGG	ref_6077_new	0	0	0	0	0	0	0	0	0	0
TATATTGATGAGTAAG	ref_6077_new	49	40	58	53	44	43	40	44	46	36
CGATGGTTTAGTTTCG	ref_6077_new	41	44	29	26	24	24	25	29	19	20
ATAGTTCCTCCCAGAC	ref_6077_new	34	49	25	23	61	23	63	21	49	28
AAGTGATTGGTTATGG	ref_6077_new	7	8	8	7	14	14	13	6	14	14
TCTGACGGCTCGGACC	ref_6077_new	46	81	63	49	70	42	73	65	52	57
TGTCGAAAGCCTCGTT	ref_6077_new	79	87	127	95	85	96	90	89	102	68
CCTATAGTTTTATTCC	ref_6077_new	200	171	226	159	216	184	193	191	222	153
GAAGTAAAATGTTTGG	ref_6077_new	5	8	2	3	3	2	4	3	4	2
AGTGGCGAAACTCGGC	ref_6077_new	0	0	0	0	0	0	0	0	0	0
TTTCACGTGCTTCAGC	ref_6077_new	52	44	79	66	65	52	66	38	62	50
CGTTTATGACCTATGC	ref_6077_new	71	77	96	88	88	58	82	57	74	82
TATCTCTAACAATACC	ref_6077_new	33	36	38	31	42	29	34	37	31	27
TACGCAAACGTGGTCC	ref_6077_new	6	9	9	11	5	6	4	5	5	7
ATATCGTGACCGTGGA	ref_6077_new	2	1	2	6	4	4	4	6	3	3
TCGATCTTATAATCTG	ref_6077_new	0	0	0	0	0	0	0	0	0	0
GGGAGGCCGCTGTGCC	ref_6077_new	13	19	26	16	13	20	12	16	17	17
ACTGCTAGAGGTGACC	ref_6077_new	99	103	142	107	92	105	114	110	115	97
TGCGTAGAGACATAAG	ref_6077_new	5	2	3	3	7	2	5	4	1	3
CGTAACTTCAGGATCC	ref_6077_new	0	0	0	0	0	0	0	0	0	0
TTGAGGAATTGTGAGT	ref_6077_new	39	57	68	54	71	51	74	49	54	37
CCCCATTAGGGTAGTT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
TATATTAAGTCTCTAC	ref_6077_new	0	0	0	0	0	0	0	0	0	0
GTACCAGGTTAGTGCA	ref_6077_new	0	0	0	0	0	0	0	0	0	0
ACGTCTAGACTTTTTT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
ATTGCTCGGGCTTCCA	ref_6077_new	13	19	19	20	26	23	22	26	22	13
ATGTAAAGAGCGCTCC	ref_6077_new	10	7	4	9	10	12	5	4	10	6
TTTCGGTCACTTATAC	ref_6077_new	23	26	23	19	11	24	38	9	26	15
CAGGCTCACGATGGAA	ref_6077_new	37	44	49	33	34	39	35	37	39	27
ACATTGGTTATGAGCT	ref_6077_new	49	49	51	49	40	28	42	49	51	31
GTTTTCCTGCAATCTC	ref_6077_new	0	0	0	0	0	0	0	0	0	0
GTTAACGCCACCTTTT	ref_6077_new	89	76	79	82	81	84	69	91	63	76
GGCCGCTTTGTTTTTT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
CTCGAGGGACGTTGTT	ref_6077_new	74	61	111	95	61	97	74	79	78	78
ATCGATGCTTTCATTC	ref_6077_new	7	3	4	5	2	3	3	3	8	2
TTCAACTCTAAACATC	ref_6077_new	18	16	13	15	19	14	13	18	17	9
GGATCGGTCTTACGGT	ref_6077_new	35	39	36	25	31	28	33	31	34	23
TACAATTTGCAGCCAG	ref_6077_new	91	95	108	95	125	98	107	76	96	84
CGAATATGGCCAATTA	ref_6077_new	12	7	9	12	7	8	9	13	9	7
GAGATCTTCATATATA	ref_6077_new	24	18	17	11	21	18	23	10	29	22
GGCATAGTCGCTCATA	ref_6077_new	0	0	0	0	0	0	0	0	0	0
GTTGTATGACTATTGT	ref_6077_new	6	10	5	12	7	10	10	8	3	7
GGAATAGGTCATAGTA	ref_6077_new	8	0	7	3	3	6	2	4	0	0
GCGCATTTTGCATCTC	ref_6077_new	17	29	46	25	31	28	32	26	46	40
AGGAATAGTGTAGGCG	ref_6077_new	0	0	0	0	0	0	0	0	0	0
CGGCCCGTTGTCTCAA	ref_6077_new	83	83	80	80	75	72	83	77	69	72
CGTCCGTCTTGCAAAG	ref_6077_new	32	29	30	36	50	22	40	25	32	23
TCTCTTTAGGCGGACT	ref_6077_new	86	93	109	93	66	98	79	81	85	73
TACGTTTTTTGCAATC	ref_6077_new	66	56	74	66	49	47	56	42	49	43
AGTCTAGTGCGGCTTG	ref_6077_new	19	27	34	20	31	31	29	18	19	17
TCAGGACGTCGGTCAC	ref_6077_new	0	0	0	0	0	0	0	0	0	0
GTATGGACGGTCCTTT	ref_6077_new	0	0	0	0	0	0	0	0	0	0
ATTTTTTGTGGTCTCG	ref_6077_new	0	0	0	0	0	0	0	0	0	0
CGTTTGGTGAGCGATT	ref_6077_new	0	0	0	0	0	0	0	0	1	0
GACTAGCGGATAAATT	ref_6077_new	30	41	52	32	29	38	42	31	33	24
TCGTAATGCCGGGTGA	ref_6077_new	64	44	89	86	47	79	59	62	47	79
GGAGAACCCCCTGTTT	ref_6077_new	34	22	27	14	24	25	23	20	33	31
GGCAAGGTTACCTGGT	ref_6077_new	34	28	32	23	24	19	25	22	22	27
AAGGCTCTTGTTATTT	ref_6077_new	69	46	73	69	46	72	50	59	68	45
CGTCGCACTTATATGG	ref_6077_new	72	94	85	70	88	71	108	70	109	67
CGAAGCATGGCCGTAA	ref_6077_new	25	20	41	38	21	31	24	35	15	31
ATTAGTGTTTATTCAC	ref_6077_new	13	9	22	3	7	8	21	11	10	7
GCTTGATATACACCTC	ref_6077_new	14	19	18	11	22	13	21	13	22	9
CATACCTACGCCCTAG	ref_6077_new	23	22	22	19	12	12	17	13	13	13
TTAGTTGCAAGATCGT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTAGAATACCGTC	ref_4926_fdr	1	2	3	4	6	1	3	2	2	2
TCGGAGTCTAATTGGT	ref_4926_fdr	24	26	31	20	39	20	39	17	40	18
GCTCCTCGTCTCTTGG	ref_4926_fdr	5	17	6	7	20	8	18	4	20	4
CTTCCTTGTTTCTTTG	ref_4926_fdr	18	23	22	9	43	18	26	19	30	12
ACGATCCTACGGGTCT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
TTATCCTTTAACCATT	ref_4926_fdr	2	3	4	9	4	3	6	3	6	1
GGTATTCTGAGCCAGT	ref_4926_fdr	182	298	255	180	355	157	394	193	343	162
AATACATCTTTTTGGT	ref_4926_fdr	19	40	13	14	24	17	24	23	26	13
AAGATGAGATCACACG	ref_4926_fdr	46	79	64	51	67	38	66	58	57	33
TCTGCCGAAGTGTTGA	ref_4926_fdr	96	162	106	98	130	93	145	66	168	92
TTAGGACTACTCGTCT	ref_4926_fdr	14	24	14	12	23	7	15	7	26	8
GCTTTCAACGGGACTC	ref_4926_fdr	11	8	12	5	14	10	17	8	11	5
GCCTGTTTTTCAAGTC	ref_4926_fdr	11	27	16	13	29	20	28	14	24	9
CGTCGGGCACAATCTT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
GCAATGGTTGGTATTC	ref_4926_fdr	3	6	2	4	3	3	4	7	1	0
TTAGTACCAATTAACG	ref_4926_fdr	59	106	102	59	110	78	118	68	116	76
GTCTTATCATGGTGTT	ref_4926_fdr	7	14	10	7	14	5	9	7	16	9
ACGTCCTATTATAGCA	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCATCCTACTCTT	ref_4926_fdr	38	61	43	38	60	34	66	25	64	26
GCACGTATCCGGCTAA	ref_4926_fdr	30	49	32	25	35	27	43	19	37	32
CGAGAATCTTATCACG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
TCGAAAATGGAGGACT	ref_4926_fdr	48	44	38	46	41	38	41	35	47	38
CAGGGACCATTTTAAG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
GAACCCAGGTCTCACC	ref_4926_fdr	56	115	63	63	114	71	112	41	121	45
ATCTTTGGTTCTGTGT	ref_4926_fdr	16	33	14	20	30	12	33	10	28	9
TCCATCATCTAAGAGT	ref_4926_fdr	9	11	8	7	22	8	13	8	11	6
GTTTTACACTCCCCGA	ref_4926_fdr	1	16	0	0	13	0	13	0	23	0
CAGGGAAACAATCGGA	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
GCATGTAGGTAGACAT	ref_4926_fdr	4	5	3	9	16	7	10	12	17	7
CTTCCGCATGTGTTCG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
CATGAGCACCACGTTG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCGCATCACCTCC	ref_4926_fdr	21	36	25	24	52	28	44	25	27	20
TGTAATGACGTTAATT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
CATAAACCAACTCCGC	ref_4926_fdr	11	25	11	20	30	18	27	28	26	18
GGTTCCATTATCCGGC	ref_4926_fdr	12	18	18	24	29	12	18	11	15	12
GTTGGGGATGTATGAG	ref_4926_fdr	19	31	23	30	43	21	40	18	43	12
AACTCGACGGGTGCTT	ref_4926_fdr	15	18	13	5	31	10	17	6	25	8
TGTGCCCATTAGCCGG	ref_4926_fdr	6	12	12	4	11	2	16	4	11	2
AGATTTGTTGCCTAGC	ref_4926_fdr	10	22	16	25	24	17	13	15	25	10
TTTCAGGGTTTTGTCA	ref_4926_fdr	40	87	55	33	77	35	86	27	79	41
CAACCGTGGCAATTTT	ref_4926_fdr	8	6	6	5	27	2	12	8	24	11
AATCCGCCCGTGGGCC	ref_4926_fdr	97	104	81	75	131	81	114	90	109	73
TCGGATCAGCCCGGTT	ref_4926_fdr	10	18	16	10	21	12	19	13	18	11
GTCTTGCGCGGTTTAG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
TAGTAGTTCCATCAGT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
TAATGGAATTCTTCAT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
GCATTTGATTATCGGG	ref_4926_fdr	40	60	48	27	65	37	60	35	49	28
CTCACGCTATTTTCGG	ref_4926_fdr	6	9	5	6	13	14	12	10	15	7
AGCTGTTTCTGTAGAC	ref_4926_fdr	40	86	60	57	88	49	96	60	102	49
GTGGGTTGGTGTATGA	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGGACTTGAAGCG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
AACATCGTTTGCTTGC	ref_4926_fdr	37	54	49	28	52	32	43	37	43	22
GAAGCTCCCCAGTTTT	ref_4926_fdr	6	4	3	1	10	7	10	5	11	3
TCTGAGGACCCTGTCA	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
CATAGCTCAGCCCGTT	ref_4926_fdr	9	24	10	11	19	7	24	11	22	8
TGGGTTCAAACGGTAG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
TGGATAAAAAGGCTCG	ref_4926_fdr	90	129	95	87	130	71	150	81	128	66
TGTCGCTTATGAAGAA	ref_4926_fdr	25	71	40	32	58	33	69	31	56	43
TAGGCACTACAAAAGG	ref_4926_fdr	5	2	3	2	2	1	1	3	0	4
CTCGGCATTATCTGGC	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
CTGCAGTGTTTCAGCC	ref_4926_fdr	43	97	69	55	91	52	79	55	109	45
GGGCGGCCGTGATGAG	ref_4926_fdr	10	24	14	14	16	21	19	22	24	19
ACGGCAGATGTAAGTC	ref_4926_fdr	43	55	33	38	59	38	51	32	62	24
TTATTTGAATAGGAGT	ref_4926_fdr	3	9	3	2	6	1	5	1	3	3
TTGCTAGTACACATTG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTGTGCTCTTGAT	ref_4926_fdr	2	8	7	4	10	5	13	4	9	6
CGATTGGTATTTAACG	ref_4926_fdr	47	107	59	53	92	55	70	65	119	35
CAGGTTGCGCCTATTC	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAAATTGCTCTTC	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
ATTAATGCTCTAAGAT	ref_4926_fdr	8	21	7	9	17	5	14	6	12	4
GAGGCACAACACTCGC	ref_4926_fdr	3	10	4	5	5	6	15	3	5	2
ACAACCATGGCGTGGC	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCTTTCCCTTCGT	ref_4926_fdr	10	31	18	16	25	12	38	14	37	15
CCCATGAGGGGGTGTT	ref_4926_fdr	21	34	18	19	25	15	27	15	19	19
ATTGGTGCACGGGATT	ref_4926_fdr	17	19	26	16	24	19	10	16	19	12
GTTCGGCTATTATATC	ref_4926_fdr	0	0	0	1	0	0	0	0	0	0
ACGGTAGAAGTCTACT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
CCTATCACTATCATGT	ref_4926_fdr	3	16	4	6	10	10	15	5	17	10
TAGCGAAGCTCCTGTT	ref_4926_fdr	2	1	1	0	3	2	5	2	4	2
CAGAAAAATCGCTGTC	ref_4926_fdr	11	11	16	13	28	9	20	16	26	13
GGCTGGCACATAACTG	ref_4926_fdr	24	30	14	7	25	12	23	12	40	10
TGTGCAATGTGTCACC	ref_4926_fdr	10	28	20	11	29	18	26	9	41	19
CTTACCGTTCCACCTC	ref_4926_fdr	2	5	3	3	5	2	9	1	8	0
TACTTAATGGTCTTTT	ref_4926_fdr	19	10	28	28	9	25	9	24	19	24
TGACCTTACAGGATGA	ref_4926_fdr	42	43	38	16	45	34	58	16	42	29
ACCGAAGGTCAGCGAC	ref_4926_fdr	27	30	25	21	31	35	34	18	31	26
TGCCGTCCTGTTACGT	ref_4926_fdr	23	30	18	19	26	8	26	16	32	15
GGGGCGCTACGTAGTT	ref_4926_fdr	12	14	16	11	12	7	20	8	22	7
CTGTAATTGCTCCTGC	ref_4926_fdr	8	23	26	16	26	12	33	17	19	12
TCTGCATAAGCCACAT	ref_4926_fdr	8	17	13	6	21	18	22	11	10	5
TGGATGCTTGACTTCT	ref_4926_fdr	28	29	33	23	42	14	40	12	36	20
CCAAGGACATCTAGAA	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
ATCAGCTCCACTTTTA	ref_4926_fdr	3	19	13	10	16	9	28	15	23	8
TAAAAAGGTACCAACT	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGACGTCTCCGGG	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGATTCCAACAGC	ref_4926_fdr	49	78	59	48	109	61	81	36	86	40
GTGCTTCGGACTGTCG	ref_4926_fdr	11	48	27	18	51	13	53	20	51	20
CGTTCAGGTGTGTATC	ref_4926_fdr	2	9	6	5	3	8	12	5	4	4
GACGGTAAAGTACGCC	ref_4926_fdr	13	13	11	13	21	14	21	10	32	11
AGCACACCTCCGTTCA	ref_4926_fdr	19	35	11	4	28	8	40	9	57	10
TTTTACCGGTATAGTA	ref_4926_fdr	0	4	9	3	5	3	7	2	4	1
CCGTATACGGTGTAGC	ref_4926_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTACGTCGATGTT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
ATAAAGCCACCTAGGT	alt_5943_new	7	15	5	8	14	8	13	13	11	9
ATTGTGATAACTATTC	alt_5943_new	11	10	6	5	12	9	11	7	7	6
ATAAGGCATCCTTAAG	alt_5943_new	68	69	70	57	84	68	80	63	64	67
AGTACCCTACTCGTTC	alt_5943_new	1	4	0	0	5	1	2	0	0	1
TATCTGTGAATCCAAG	alt_5943_new	33	43	59	52	43	39	42	40	44	38
ATACTTTTAGATCAAC	alt_5943_new	0	1	4	0	0	0	2	0	2	0
TCAAGACAACGGGGCC	alt_5943_new	20	36	35	19	52	19	48	25	49	23
AGATCTAAGTGCGTTT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TTGTTTCTAGCAGTCT	alt_5943_new	244	276	316	247	309	247	284	208	261	178
AGTGACTCTGGTGTCT	alt_5943_new	47	69	72	61	68	51	75	54	74	50
AAATTCGGGATGCCTG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GGATGGGAGCCTGCGG	alt_5943_new	25	13	24	17	25	12	28	17	18	17
TCTTTTGAGTTCCGCA	alt_5943_new	10	18	14	12	15	17	18	10	12	14
CCCGAGGTTCGAGTGT	alt_5943_new	7	13	7	8	10	8	13	5	12	10
TTATCTTATGCTATCA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TGGAGTGTGTCTATTT	alt_5943_new	26	38	29	32	30	28	35	29	30	20
CAATGAGGTTACAGTA	alt_5943_new	9	8	19	8	13	16	7	9	16	7
TAATTTGATCCTCTAG	alt_5943_new	20	31	24	23	19	22	23	39	25	13
ATGTAGTCCCATCTCT	alt_5943_new	0	1	2	2	1	4	3	0	0	1
TGTACAATGACAGTAT	alt_5943_new	32	39	27	32	25	26	31	29	53	29
TTGTGAAACTTCCTAG	alt_5943_new	61	62	66	49	64	64	62	69	81	53
TGTTATTTCTTAATGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GTGCCAAGTGCGGGTT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCCACTCGTCGTTTAG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GTTTATCTGGTCGCTT	alt_5943_new	13	15	8	9	12	3	11	5	13	2
CCCGGGCTGTCGGCTA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TCTTCTCATCAGGCCA	alt_5943_new	62	53	63	49	49	54	65	43	45	57
GAGTTAACACTATGGG	alt_5943_new	24	36	32	23	24	16	25	18	16	18
AATAGGTAAGTTGAGT	alt_5943_new	36	63	64	56	59	43	73	51	61	50
CGTCAAGCTCGGTATG	alt_5943_new	25	30	8	19	22	22	19	21	31	19
AAATGTGTCAGCGAAT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GCTTTTTCCTCGCAAA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TCCGTTTGGCGACTTC	alt_5943_new	18	18	20	15	21	26	23	11	24	19
GTACGTTCAAGGTGTA	alt_5943_new	86	88	76	83	94	66	108	65	115	77
TAGGTCATCTCAAGTT	alt_5943_new	22	27	12	19	9	13	26	20	22	8
GTTAGTGTACCGTGGC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
ACAAGCTTAGCATCCC	alt_5943_new	33	52	47	53	60	44	36	36	35	28
GTTTCATGACGGATAC	alt_5943_new	40	36	37	21	23	22	20	26	33	25
CTCCTTTTATCATAGG	alt_5943_new	23	24	25	22	20	19	24	11	22	19
AGCCTGCAGGATCGTC	alt_5943_new	15	24	12	6	16	13	20	10	12	8
GTCTGTAGTCATGTTC	alt_5943_new	11	18	14	14	22	7	20	11	16	4
TTCACATTTATGCTAT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
ACGTAACAGGCTTACT	alt_5943_new	4	9	0	3	9	7	14	2	8	3
TTCCTATCATTAGTCG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CGGTTTACTACGATAT	alt_5943_new	24	27	31	37	29	22	34	25	27	24
GCATAGGCTATCAAAG	alt_5943_new	70	60	67	51	49	48	62	43	53	46
TGGAAATAAGTTGGCT	alt_5943_new	31	42	56	35	33	42	41	41	58	33
TTACACGGCGTCGGTT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCTTTTACCGCGAACC	alt_5943_new	6	5	9	3	11	7	14	5	7	9
TACCTAGAAACTTCAT	alt_5943_new	48	70	45	59	59	44	77	45	78	33
TATTTCTTTGACTCTC	alt_5943_new	74	74	87	78	85	58	64	63	81	51
CTTATACTTGTTTTGT	alt_5943_new	29	37	40	39	41	37	35	32	48	29
TCGGGTAAGACGAGGC	alt_5943_new	32	59	49	39	36	29	52	52	58	53
TTCCGGAGTCCCGGGC	ref_5943_new	8	15	16	9	13	9	11	5	11	9
CACTTATCTGACATGG	alt_5943_new	20	9	12	18	8	12	14	7	15	6
ATCGTCCGGTCCACGC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GTTCTTATATGGTTTA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TCGCTGTTGCGCTCCT	alt_5943_new	9	13	8	4	6	4	9	6	7	8
AATTTGCACAGTTCAT	alt_5943_new	5	4	3	6	6	5	2	5	3	4
CTGATTAGTGAACTGC	alt_5943_new	15	27	10	7	15	13	17	12	16	18
TTGCTCTTCTTCAAAC	alt_5943_new	20	15	19	20	25	19	28	14	15	17
TAGCTGGCGTAGTTTA	alt_5943_new	3	2	1	3	2	1	1	0	3	1
CGCAAGCGGCGTCGGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GGCGTAGGGAGTAGTC	alt_5943_new	3	14	5	14	14	13	12	6	15	13
GAAGTGTAATCGTCGG	alt_5943_new	64	77	90	69	82	62	64	62	79	58
TCGCCTGCAATCGAAC	alt_5943_new	7	6	8	4	7	7	4	2	6	2
CTTAGCGTGGTAAGAT	alt_5943_new	6	6	6	8	4	5	4	7	12	6
GCTGAGTCCGCGACCT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TGAATTTAAATGTGCT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GAAGCTATTTTCAGAG	alt_5943_new	9	23	14	10	10	11	10	19	13	9
GATACGGCAACTGGCA	alt_5943_new	17	20	11	13	12	7	20	16	15	8
CTTCACCGCGACTCAT	alt_5943_new	47	68	48	46	79	45	68	37	71	43
GGCAGCGTGGCCTCTA	alt_5943_new	3	16	14	15	10	9	13	7	9	11
GTGCACCACTATTTTC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TTCCGTTTTTTGTTTA	alt_5943_new	36	30	34	43	36	25	52	36	37	34
TTCCTAAGTCCCATCG	alt_5943_new	26	49	49	41	44	42	44	19	35	29
ATTCAATGGTTTTCAT	alt_5943_new	53	55	49	36	45	40	59	45	49	46
CACGGTACCCGAAATT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TCTCATTCCTTGGGAT	alt_5943_new	33	39	38	27	30	29	22	31	29	32
AAGCACAGGGCGCTTC	alt_5943_new	9	11	12	18	12	8	20	14	23	7
CTCTCGTTCCAAACTA	alt_5943_new	47	69	59	57	47	53	59	56	63	62
TGGGGCTCTATATCTA	alt_5943_new	40	34	35	32	41	24	58	41	39	36
TCAAGTGTTTGCCTCT	alt_5943_new	3	1	0	0	7	0	1	5	7	1
CTCGGCAATACGAGTT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCCGTAGGATTCCTGC	alt_5943_new	22	27	20	32	20	34	21	18	28	16
CGATGTGATTGCTGGC	alt_5943_new	63	60	96	61	58	58	65	57	49	63
GGTCGCTCATGTGTGA	alt_5943_new	5	19	17	16	18	10	12	7	18	9
ATTGCCTGTGAATGCG	alt_5943_new	23	37	38	14	35	17	28	17	33	19
GCTGTTTGAAGAAAGA	alt_5943_new	45	31	49	38	28	41	53	39	43	45
TTGCGGCCTTCGCGTG	alt_5943_new	15	24	23	28	22	20	28	20	38	15
AGTTCTCGATGCGCAG	ref_5943_new	15	26	31	18	38	22	30	21	30	27
CACATAAAGTAGACTT	alt_5943_new	15	19	30	22	18	15	28	13	23	12
CGTGTCAATCCACGGT	alt_5943_new	35	30	51	46	36	42	45	38	39	43
GAAAGCGAAGGGGAAT	alt_5943_new	33	40	59	45	39	37	47	44	44	45
GACGACTCTAGGGTCA	alt_5943_new	34	30	30	32	37	25	36	31	27	20
CAAATTCTTGCGACCA	alt_5943_new	57	50	56	37	47	55	57	45	68	51
AACTCTCTTCCAGGTG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
ATACAACACTACGGAT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GAGTGGATCTTCATTT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCACCACTACTGATGT	alt_5943_new	33	36	36	18	43	21	47	34	41	28
AGTGATAAATCCTCAG	alt_5943_new	38	49	43	40	32	44	22	20	35	30
CTTCATAGCGGGATAC	alt_5943_new	33	17	31	18	21	27	25	17	16	27
CAGTATAGCTTAAACT	alt_5943_new	12	20	13	19	13	10	15	18	16	22
GGCTGATTTGGGTAGG	alt_5943_new	18	15	13	12	13	9	22	22	17	17
CCCCTGCTATCGGTGC	alt_5943_new	14	17	16	14	15	8	14	8	13	12
GAGCCCGTTCGGGAGC	alt_5943_new	1	1	1	2	3	0	2	0	0	0
TGTAAAGCTGAATCCG	alt_5943_new	29	39	36	36	34	38	32	36	27	26
GTTTAGTGTCATTTAC	alt_5943_new	31	48	55	54	64	35	63	52	54	37
ATGCTCTGCTAGGTAA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TGTGCTGCCGCTAGAT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CTTAGGAGCAACTTTG	alt_5943_new	18	13	27	23	23	16	29	27	29	18
TCTTCTGACCAGGGTC	alt_5943_new	5	4	6	1	6	0	5	1	9	0
TCATCGAGTAAGTTGT	alt_5943_new	29	44	58	35	57	36	49	44	48	32
AGCTTTCGTGCCACCG	alt_5943_new	65	122	88	72	109	62	107	57	84	59
AGCCGTTTACGTTGGT	alt_5943_new	40	57	51	50	51	27	76	37	60	45
TTTGCCAGATCATCTC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GCCCGTGCTGCTGGAG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GAATCTGATTAATTTC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCGGCGATTCGTGCTG	alt_5943_new	49	147	62	45	159	50	148	37	143	30
ATAACGCTGGTCCTTG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CAGAATAGGCACCATT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CACTCTCATTTTCGTA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TCGAGCTGCATCATTT	ref_5943_new	29	32	36	22	34	26	41	19	43	25
AACATGTATTCAGCCC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
AAGAAGTATCACTGCG	alt_5943_new	7	10	10	23	20	17	25	15	20	9
TCGCACAGAGTCTATC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TGTTTACCCCCGATGA	alt_5943_new	134	135	155	139	144	145	139	169	132	125
GTATTTCTCTCATGAG	alt_5943_new	29	23	44	29	35	26	32	18	37	29
TTGTCAGTATCGGTCC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
AGATTTTTTTGCTTGG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
ACTTTATTTCGATGCA	alt_5943_new	48	58	47	46	57	51	77	53	62	56
TTCTTATGCTTATTAG	alt_5943_new	40	43	69	34	45	36	46	33	49	25
ACGGCCTTATCTTGGT	alt_5943_new	25	36	42	41	35	29	37	21	38	30
CTTTATACCAATATCG	alt_5943_new	17	29	30	16	24	21	19	18	32	24
GATTGGGCTTTCCATG	alt_5943_new	20	15	18	13	19	13	13	13	19	8
ACTCTTCACTCTTAAT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CTCGCCAGGCTGGGTC	alt_5943_new	18	11	17	10	13	10	11	11	12	5
TATACTGTCTTTGTGC	alt_5943_new	68	53	50	44	55	50	64	37	54	43
CGTGCGCAGCTGCCTT	alt_5943_new	31	35	44	57	39	25	44	42	59	35
TGGTTTTTATTATACC	alt_5943_new	1	5	5	3	4	4	4	3	3	2
GGTCGCAATTCTTGTT	alt_5943_new	8	13	13	8	6	9	8	8	11	11
TGACCCAAACTTCTTT	alt_5943_new	3	0	1	1	2	0	0	3	1	2
CCGATGTTTAGTGGGC	alt_5943_new	23	25	25	12	26	14	16	27	22	17
CCCTGGGTACTTGCAC	alt_5943_new	2	3	3	1	2	5	7	0	1	4
CAAGAATTTGCGCTTT	alt_5943_new	14	19	12	13	23	9	6	16	12	6
CTAGATTTCGTCGTAC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCCTGCTGCCATCCGG	alt_5943_new	24	20	41	28	37	23	33	32	35	24
GTTTCATTTCTCACCG	alt_5943_new	21	22	19	23	11	10	9	8	20	12
GAACTATGGTTCGTGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GCTTCAGGTACGTTCT	alt_5943_new	47	26	49	31	39	36	34	40	36	39
GTGACAACGCCTCATG	alt_5943_new	4	7	7	9	3	5	7	6	10	6
CTGTTCTAAAGTCTGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TTAATTCTCCCGATCT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GTCCCTTTAGCCCCTT	alt_5943_new	29	46	43	36	31	47	52	33	46	29
GTCCTAGCAACTCCGA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CACTGCTACATCTTGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCGATGGCGGCATTGC	alt_5943_new	8	5	2	4	3	3	2	3	2	6
ATTGTGATGCTATCCT	alt_5943_new	45	59	51	52	54	39	55	38	50	47
TGCCATAACGCATAGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TTAAGAACCCCTATTG	alt_5943_new	36	31	30	21	25	21	31	18	25	20
TCCCTCTCTTAGTATG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TTTCACGCTTCTCGCC	alt_5943_new	17	16	18	23	17	18	15	10	17	14
GCATATCTTTTTATAC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CTTAGAAGATATCTCG	alt_5943_new	147	137	171	146	134	120	175	140	139	136
GCGGTATATGTGTCTA	alt_5943_new	28	33	27	17	22	30	33	18	26	12
ACCATCCGTAGGTCTT	alt_5943_new	5	2	3	4	2	0	2	3	8	2
TGTAGAAGGGAACGTC	alt_5943_new	4	5	1	3	4	4	6	4	15	5
TCTTTATTTGGTCGTG	alt_5943_new	10	2	14	22	13	8	8	11	16	8
TTTCGCCTTCTTGAAA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
ATACTTCAACTACCGG	alt_5943_new	25	27	23	32	32	23	33	32	40	33
TGTCTGGTCATTAGCT	alt_5943_new	126	171	191	130	172	146	194	145	187	115
CTGTTCAATGTCTAGC	alt_5943_new	54	68	75	49	62	47	68	46	89	66
TCTGACGTTTAAATCT	alt_5943_new	36	96	43	36	98	30	102	43	107	29
AGTAACGTTTCCTTCT	alt_5943_new	13	6	19	14	12	9	11	14	18	11
TCTGCAAACCTCTGCG	alt_5943_new	26	39	44	32	33	21	44	32	35	27
GTGGCTTAAACGAAAC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
AATGTTACTGGGTGTT	alt_5943_new	6	9	7	3	5	6	4	4	7	2
CACTGATAGGTGCAAG	alt_5943_new	46	53	53	53	40	54	72	42	51	28
GGAGTTCCATCGCTCT	alt_5943_new	13	17	18	11	13	21	16	18	11	17
TAAACGCTGTTCAGTA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TTCACATTTTTGCACG	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GATTAGATTGTCTCTG	alt_5943_new	17	19	33	22	15	22	27	19	23	14
TGCCTTACTTCAGACT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CCAGTGTGTGCGTCCT	alt_5943_new	2	49	8	7	43	5	47	5	46	9
CCCTATGAGTGATTTC	alt_5943_new	3	10	7	5	8	10	7	7	8	1
AAAACTAGGCGTGCGG	alt_5943_new	37	60	49	48	35	32	41	36	47	36
ACATCAGTACGGATAC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CGAGCTACGCTTTTCA	alt_5943_new	51	39	54	39	44	58	60	51	51	44
TCACGTCCTCTGAGGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
ACCCAGCGATACGAAT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GGAGTATCAAATTTCT	alt_5943_new	0	5	1	0	0	0	4	2	1	1
TGATGTTTCTGAACGA	alt_5943_new	38	32	35	32	40	25	34	30	36	36
GTAATACGCTAGTGTT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CTGGAGCTTTTACTGT	alt_5943_new	9	7	8	7	8	5	2	14	15	4
TCCCAAGCATATTGAA	alt_5943_new	41	46	45	37	54	25	53	34	54	27
ACAGTATCCAACCACG	alt_5943_new	15	22	23	18	13	18	20	14	24	9
CCGCGTTAGGACAACC	alt_5943_new	31	42	24	29	39	22	57	21	49	25
CATTGTGGAGATGGCG	alt_5943_new	82	75	94	79	75	71	71	86	73	85
TGTAATGGTGCTCTTA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CATGTGATATCGTGCA	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CTAGTTTTCCAAACTC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
GGTGACTGAAGTTAAA	alt_5943_new	87	96	108	103	111	76	112	91	120	83
CCCGGGCAATGATAAC	alt_5943_new	1	1	1	0	2	0	4	1	3	1
TGGAGGGTTATCACAT	alt_5943_new	122	101	110	99	79	74	113	98	98	79
CTTACGTCCACACCCT	alt_5943_new	32	60	58	29	76	51	44	40	57	23
TCTCAGAAGCACGGTT	alt_5943_new	5	2	8	5	3	15	6	7	12	3
GAACTTCTTTTCTGAG	alt_5943_new	24	26	40	28	14	24	41	13	26	17
TATTTTGTTACGCTGT	alt_5943_new	29	26	30	33	35	34	29	23	40	20
CGGTTAAGCTTGTGTC	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CGTAATTGTTCCTTGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
TGTGCGGTTTTCTTTG	alt_5943_new	49	63	67	42	56	31	63	41	59	28
CACGCATTACCGGCGG	alt_5943_new	33	25	31	20	33	20	22	32	22	29
CTGTTAAGCAATGAGT	alt_5943_new	0	0	0	0	0	0	0	0	0	0
CTTCTGCTACGCTACT	alt_5943_new	18	38	23	29	31	29	38	18	40	15
CCGTGTTCCTTAGGAA	ref_5808_new	2	12	9	7	10	7	19	4	13	7
TTTGAAATGCCCTTGT	ref_5808_new	15	29	18	18	32	12	27	14	29	6
TCAATTTATGGATGAC	ref_5808_new	58	62	82	71	101	63	55	55	89	54
ATTATCGATTCAGGTG	ref_5808_new	0	0	0	0	0	0	0	0	0	0
GTCCGGTTGGGTGCAG	ref_5808_new	0	0	0	0	0	0	0	0	0	0
TTCGTCTGGTGTGGCC	ref_5808_new	12	17	11	13	13	16	16	13	23	10
CTAGTTATTACCAATG	ref_5808_new	55	92	52	66	73	52	93	54	100	50
GCTCAGTAGTTGCGGC	ref_5808_new	27	66	55	38	54	30	64	40	51	45
CTCATAGGTGATCCCA	ref_5808_new	45	80	56	52	57	30	59	48	53	42
ATACGATCTGTTAACT	ref_5808_new	14	11	14	9	17	4	25	6	18	15
TAGCAGCCTTACGCTT	ref_5808_new	4	11	5	5	8	2	11	3	5	4
GACAAGTGCCTCCGAT	ref_5808_new	10	15	12	6	8	10	6	8	11	2
TGTTTTTGTCTGGGTT	ref_5808_new	4	6	6	6	8	11	11	5	11	2
ACGTAGGTTACGGTTT	ref_5808_new	0	0	0	0	0	0	0	0	0	0
TCCACTTGACGGAAAC	ref_5808_new	0	1	1	2	2	0	0	0	0	1
GCGATTCCAGAACCCA	ref_5808_new	6	6	5	6	7	7	10	14	7	4
TTGTTAAGCCAAGTAC	ref_5808_new	7	6	3	11	3	8	12	11	19	7
CTCCCGGTTCACAGGT	ref_5808_new	0	0	0	0	0	0	0	0	0	0
GGTGTACACGCTTAGC	ref_5808_new	0	0	0	0	0	0	0	0	0	0
AAGGGACTGCGCAACT	ref_5808_new	16	17	21	19	25	21	21	16	27	13
GTAATTAGGGGTGCTT	ref_5808_new	2	5	2	2	3	1	7	1	5	0
GTCTTCTCATAGGGCA	ref_5808_new	20	26	25	15	21	14	24	16	27	13
ACCTTATCTCATTCCC	ref_5808_new	7	12	2	6	14	6	9	6	5	2
CTGCTATCCCGAGAAT	ref_5808_new	17	36	15	23	35	21	23	19	36	13
GCTATTCAGGTTTTTC	ref_5808_new	0	0	0	0	0	0	0	0	0	0
ACGTGTCGCTGCTACG	ref_5808_new	37	59	31	33	48	27	51	29	54	43
GTGGGCTCAAGTTATC	ref_5808_new	0	0	0	0	0	0	0	0	0	0
AAATGTGCTCTTAAAA	ref_5808_new	28	32	30	25	38	23	40	33	38	28
AGTTACACACCGGAGG	ref_5808_new	3	4	14	7	7	7	5	4	5	5
TTAAAGACCTTGGGAC	ref_5808_new	99	170	112	135	171	116	175	82	168	107
AGCGCGACATAGCAGC	ref_5808_new	43	86	54	47	84	63	82	40	65	31
ATACAGCGGTCGCGGA	ref_5808_new	26	40	32	32	34	23	25	17	39	24
TTATCGCGTCCGTTCA	ref_5808_new	0	0	0	0	0	0	0	0	0	0
TCATCTTCCTTGGTTA	ref_5808_new	19	59	26	27	44	16	32	17	33	24
CTATCGGGCTTAGTTT	ref_5808_new	65	84	63	55	82	69	101	59	92	54
GTATGAGTAGGTTCGC	ref_5808_new	18	39	24	28	28	23	43	18	51	20
ATATTGTGTGTCTTCC	ref_5808_new	59	63	55	60	49	38	63	36	64	44
CTCACCGTTTGCTACC	ref_5808_new	8	20	23	16	25	6	23	3	22	5
TGCTTTAAAAGGCGCG	ref_5808_new	30	46	40	50	62	24	39	36	55	36
ATCAGTATCGTCTGGT	ref_5808_new	62	97	69	70	88	53	123	62	103	56
AGCCAGTATCGTGTGA	ref_5808_new	4	22	5	7	17	7	13	12	12	4
CTGAGACTTTCGTCTG	ref_5808_new	49	64	59	45	69	47	64	53	73	36
GGCGAGCTGTGTGCTA	ref_5808_new	23	28	22	20	29	33	34	20	41	24
CTACTGATTCATTCTC	ref_5808_new	40	73	44	49	60	37	58	41	85	50
GGCTGTGCTCTCCTTC	ref_5808_new	0	0	0	0	0	0	0	0	0	0
ATGAGTGTATCAATAT	ref_5808_new	1	2	1	1	1	3	3	0	1	1
TGCTGTTGTAGGGTAG	ref_5808_new	8	15	9	13	6	5	12	7	8	2
TCACTTAGTGGCCTCC	ref_5808_new	23	43	25	24	40	9	46	17	50	12
AAACCCACGAGTGTCG	ref_5808_new	15	15	20	21	21	17	23	24	24	19
GTTCACTACATCATGA	ref_5808_new	58	83	72	43	75	38	60	50	87	55
AATCCGTGGACATTAC	ref_5808_new	7	7	5	8	6	3	11	2	10	8
AGGGTTTTATGTGTTA	ref_5808_new	0	0	0	0	0	0	0	0	0	0
TATAGATGTTTCAATT	ref_5808_new	16	34	23	24	32	27	30	17	42	26
GGCCACCTTATCACTC	ref_5808_new	34	83	37	45	81	34	98	39	100	27
GTAGCTTTAGATTTGT	ref_5808_new	3	4	1	2	4	5	2	5	1	3
CGGACCATTGGCTTGT	ref_5808_new	28	36	29	23	30	34	41	27	50	17
ATTCCCATAAACTCAT	ref_5808_new	23	26	38	30	21	24	33	25	31	24
TCTCACCTTCGTTGTT	ref_5808_new	2	1	1	1	0	3	1	3	4	3
GCACGCCTTGATCCTA	ref_5808_new	4	11	8	7	15	7	18	11	10	3
GAGACTGAGAGGAGCA	ref_5808_new	61	86	60	53	70	61	77	48	87	60
TATATTTTGGTTGCCA	ref_5808_new	8	15	5	8	26	11	23	7	18	11
TGGTTGTTGCCCTTTA	ref_5808_new	8	10	10	5	11	8	12	6	13	8
TGATGGGTACAACCGG	ref_5808_new	34	43	35	39	45	17	55	32	51	28
TTAAGACGATTTAGAC	ref_5808_new	28	40	21	35	47	15	40	30	47	18
CTCTTTTCTACTTGTC	ref_5808_new	14	23	16	14	21	18	25	16	33	16
CCTCTTTCATGCAGAA	ref_5808_new	24	48	34	23	39	22	33	20	52	20
CACTAAGTGGAATCCC	ref_5808_new	24	21	30	27	29	20	20	26	27	28
CGGACGTAGCGACGAC	ref_5808_new	30	48	47	31	49	42	44	37	52	40
TTGCGAGCAACCACGC	ref_5808_new	25	17	29	12	22	16	27	13	26	14
AAAGGCAACTATTAGC	ref_5808_new	24	40	24	28	26	29	31	24	31	29
TCTACATATTTTTCAT	ref_5808_new	18	24	40	20	30	25	33	22	24	23
CGCGTATTTATAACCC	ref_5808_new	9	17	14	9	11	12	14	16	11	5
CTTTATTTCACTGGGC	ref_5808_new	10	24	18	21	15	6	34	13	26	15
AGACGGTGTGATCTCT	ref_5808_new	90	118	111	89	119	91	127	87	142	75
GAGCACATTCCCTGGG	ref_5808_new	26	32	29	22	27	23	34	24	24	19
AGCGAAACCCCTCTGT	ref_5808_new	38	54	61	51	69	46	63	40	79	33
ACCTGATACGCTAATA	ref_5808_new	204	284	228	224	378	212	336	228	365	207
TACGCTGCTACTCCTG	ref_5808_new	0	0	0	0	0	0	0	0	0	0
GTTTGAATAAGCGGTA	ref_5808_new	0	0	0	0	0	0	0	0	0	0
CCGAGTAGCTGTTCTT	ref_5808_new	0	0	0	0	0	0	0	0	0	0
TTGGGGTGAGTAAAAT	ref_5808_new	18	15	19	17	22	20	25	24	21	21
ATGAATGCAAATTAAA	ref_5808_new	77	96	113	94	91	76	135	57	121	87
CTGTGAGAGGAATAAT	ref_5808_new	28	47	33	29	49	23	30	24	46	31
CCACGCGGTCTATTTT	ref_5808_new	4	10	7	2	10	6	15	15	21	5
GAGTTAACCCCGCCGC	ref_5808_new	0	0	0	0	0	0	0	0	0	0
GGCCTTTTAGGTAGAC	ref_5808_new	85	142	115	86	146	83	138	107	134	77
TTATGGGTTAAATCAA	ref_5808_new	56	94	55	45	56	50	76	43	69	31
TCTCTACCTTAGATTG	ref_5808_new	14	13	7	1	19	15	16	8	14	18
CTCACCACTGTTAATA	ref_5808_new	0	0	0	0	0	0	0	0	0	0
GGGCAATTTAAGCCTT	ref_5808_new	0	0	0	0	0	0	0	0	0	0
TGATGAAGTTCCTGGC	ref_5808_new	260	300	287	234	327	228	327	252	315	241
GAACGAGTCTCTTTCG	ref_5808_new	7	16	13	8	12	9	5	14	19	5
AGTTTGCTGGCTGCGC	ref_5808_new	81	123	106	66	119	80	123	68	118	73
ACTAGATTTTGACATT	ref_5808_new	9	13	11	16	33	7	18	16	12	13
TTCGATCTAATCGGTC	ref_5808_new	5	12	12	13	9	4	11	9	8	9
TATATCAGTCTCCCTG	ref_5808_new	0	0	0	0	0	0	0	0	0	0
TGAGGCGACACGGTGG	alt_378_fdr	37	14	39	43	21	36	27	37	27	43
TTTTGTTTATCCGGTA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TATATTAGCCATACTT	alt_378_fdr	3	0	7	5	6	7	6	3	0	3
CGAATTTTACCTATGA	alt_378_fdr	174	87	213	178	90	141	84	178	113	167
GGGGATTTATGCGTTT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GATTGGTAGCTAGGGT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTCGGAATGGTT	alt_378_fdr	41	13	44	45	16	44	33	41	19	35
AAAGTTTGCTTGCAGT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCTAACAGGGTTG	alt_378_fdr	64	29	104	77	42	78	37	64	38	39
AAACACCTGCGACAAC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CTTACATTTCGGATGT	alt_378_fdr	31	16	42	50	32	24	22	29	23	22
CCTGTGTTCAGCACTC	alt_378_fdr	17	11	26	24	6	28	18	20	16	26
CCACCATCCGCAATTG	alt_378_fdr	35	77	47	41	91	43	84	66	104	33
AGCTTGCTATACGTTT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTAATAGTTATG	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGTTGTTCTCCCT	alt_378_fdr	25	10	29	22	8	33	8	16	9	22
TTGCTTATCATATACT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGATATATCGCTA	alt_378_fdr	3	5	3	8	8	8	1	4	8	4
TTCTCTCTGAGCATAG	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
AATGCATGACACCTCT	alt_378_fdr	101	49	128	123	53	89	36	117	53	89
CTTTTCACGGCCAAGG	alt_378_fdr	32	18	29	25	18	14	11	28	15	17
TTCGGGTATTTTCCGC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCTGTTCCTTTAG	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CGTGGGGTTATCCTCC	alt_378_fdr	30	18	45	36	15	23	24	40	22	36
TGGACGCTTAGGACGT	alt_378_fdr	1	2	2	6	1	3	1	5	1	5
CAACATGATTTTCCGT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTTTATTGAGTG	alt_378_fdr	40	31	54	36	31	43	24	43	39	22
CCTCGGGGAGATCGTT	alt_378_fdr	20	9	23	21	21	13	9	12	9	11
CTCGGCAGGGCGGGAT	alt_378_fdr	41	18	56	41	15	43	13	47	16	30
AGATTGTCGTTTCTAC	alt_378_fdr	420	226	499	464	248	411	222	426	276	368
CATCATGTTGTCTTTC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCACACATAGCTG	alt_378_fdr	67	45	78	92	43	47	40	60	39	56
AGATTGACGTTTCTAC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTTAATAACCGT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGCCCCGCCTGCA	alt_378_fdr	12	7	10	15	7	17	8	16	10	13
TTATGTCGCACCTCGT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTCGGTTCTAGAA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GTGGAGGGAAGAATTT	alt_378_fdr	46	26	58	46	36	56	35	56	27	44
CGATGGTCATTGAGGT	alt_378_fdr	13	8	25	29	11	25	15	17	17	15
TTAGCCTTATCTATTT	alt_378_fdr	36	24	44	38	38	44	22	39	19	29
GATCCTTCAGCGTCAG	alt_378_fdr	9	2	5	3	4	4	3	5	2	3
TCACTGCGCACTGGAA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGTGTATCGATAT	alt_378_fdr	68	34	65	67	42	52	28	48	33	36
ACGAAATTTTAACCGT	alt_378_fdr	6	4	3	5	2	9	4	3	0	3
ATCTGGGACCCCCAGT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
AATTTTCTTGCCCATA	alt_378_fdr	42	21	61	49	17	41	31	42	19	38
GTGTCCGTTCTCCATC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TACATGGTTCTGGCTT	alt_378_fdr	43	12	49	35	23	21	18	43	27	23
CCCCGTCTATAGTTAC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
AACTCTTTTAGGCTCT	alt_378_fdr	130	78	155	162	88	132	74	133	75	98
ATTTAGATGGTTCTTA	alt_378_fdr	164	80	204	168	88	164	126	150	104	133
TCGACGAGACTTTAGC	alt_378_fdr	42	31	45	47	26	48	36	34	42	43
TTGATTAGCTGCAAGG	alt_378_fdr	131	61	147	136	79	123	73	111	76	106
AAATCTATGGGTTGTA	alt_378_fdr	42	25	68	44	16	58	22	39	18	48
CTTTAATGGCGAATTT	alt_378_fdr	206	83	249	213	99	166	107	191	100	165
CTCACGGGACTCTTCG	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GCACTGTCTTACATTG	alt_378_fdr	4	5	8	11	4	5	7	8	4	12
CTTTCTCGCCTGCGTA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTCAAGTTCGATT	alt_378_fdr	71	47	71	76	40	67	56	56	40	61
ACCTTTTGCTTCCCTT	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAGTGCATTGGCA	alt_378_fdr	19	18	31	26	18	27	15	14	22	21
ATGATATTTTATCGTA	alt_378_fdr	12	5	7	8	7	5	9	14	4	8
TTCTAAGCCGAGTTAT	alt_378_fdr	22	10	28	22	16	32	21	18	17	27
AAATTCAGTTGCTTCC	alt_378_fdr	31	16	29	28	18	28	22	26	14	24
TTGCTGGTCAGGGCGC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCTTGGGTTTTGA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GAGGGTTCTTTGGGTT	alt_378_fdr	21	11	12	15	10	14	10	12	6	25
ATTGATCATAGGCCTA	alt_378_fdr	43	15	48	47	23	34	20	45	15	38
TCCTTGGTCTATTGTG	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CACTGGGCGTGGAACG	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TCAAATCGTGCCGCCA	alt_378_fdr	4	5	11	4	4	6	4	7	3	8
GCCGTTGACGACGTGT	alt_378_fdr	17	7	16	12	9	28	8	13	7	16
CGGGCGCAAAAGCCTA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CTTCAATGTATACCTC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGTTGCCACAGTC	alt_378_fdr	158	104	221	150	109	161	112	160	114	142
TTTCACATGAACTCGC	alt_378_fdr	14	9	32	25	13	12	17	14	17	15
GGATTAATATGGTGGA	alt_378_fdr	73	26	56	49	29	64	33	55	27	33
TTCCGACACTTCCTCT	alt_378_fdr	26	13	28	23	13	21	19	28	18	20
CCCCCAGGGTTATTTG	alt_378_fdr	25	33	33	23	41	15	33	33	38	16
TTTTTAGCTCCGGATA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
CTATGGGTTTTGATCT	alt_378_fdr	26	20	30	41	33	22	11	33	11	20
AGCATATCAAAATCTT	alt_378_fdr	67	35	99	120	52	63	40	73	35	76
TAGGAAGTTCCCCTGC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTGTGAGCTATG	alt_378_fdr	51	37	72	51	35	54	52	63	47	53
CCTGTTCGGATGTGTG	alt_378_fdr	12	10	27	19	9	15	4	18	10	15
GCATCTCTAGCACGCA	alt_378_fdr	44	21	41	35	23	27	24	30	18	22
AACAATTGTAAATGGC	alt_378_fdr	23	13	37	20	6	26	8	14	10	12
ACTACTGTCCTTCGTC	alt_378_fdr	25	19	40	27	21	17	26	23	16	23
TCCTTGACTCGCTGTC	alt_378_fdr	50	14	51	28	25	31	23	29	16	30
ATCGTGGTCTAAGCCT	alt_378_fdr	162	92	188	150	87	135	106	133	85	133
TCCGTTGAACTGTTAT	alt_378_fdr	13	6	17	15	11	8	7	11	8	12
TCGTGCATTCGTGTTC	alt_378_fdr	12	9	10	5	3	12	8	11	8	15
ATCAAGATCGTTCGCG	alt_378_fdr	62	54	79	54	42	60	58	60	35	55
TCTGTTATTTCGATTA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGGGTAACTCGA	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
GGACCATTTTCCAATT	alt_378_fdr	74	38	112	61	54	88	69	74	52	78
GCGGTTGTCTTATAGC	alt_378_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGGTCGGGTAGAC	alt_378_fdr	70	35	55	67	34	51	44	49	40	49
TGGACAGGGTCGTAAC	alt_378_fdr	48	37	71	41	40	56	30	54	28	58
ATGTCAGCACGAGCAT	alt_378_fdr	65	47	94	65	36	78	38	71	57	68
GTCCGTTTGTGTGACA	alt_378_fdr	126	100	115	122	78	108	77	104	87	129
TATATTTACGTGCGCT	alt_556_upstream	75	41	71	76	55	55	55	63	54	61
ATGGATCATGTTGGTA	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
AGACGGGTATATCAAG	alt_556_upstream	6	3	5	6	8	5	10	10	8	11
AGGAATTAATGGATTG	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCTCAGCTTTGCC	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
GGACGTACCCATTTTC	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
AGGAATTCTTGGAGAT	alt_556_upstream	149	130	175	133	93	129	94	100	94	117
GAAATCATATTACGAC	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
ACGCGGGCTTCATGAC	alt_556_upstream	14	8	11	17	6	17	5	11	9	19
AGTGTTGCTTAGGATT	alt_556_upstream	10	8	18	10	2	10	12	11	10	8
CAGCTTTGGCTATGCC	alt_556_upstream	45	31	54	37	48	34	32	29	32	30
TGCTGCATGCCGTGCG	alt_556_upstream	60	34	84	51	25	72	49	68	47	60
TTCAGATCTGTTGTCT	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
GCTACGTCCCTCGAGC	alt_556_upstream	208	201	248	201	194	198	215	163	192	195
TGTTTACAGTGCCCGC	alt_556_upstream	33	22	41	38	33	15	17	32	22	32
TGGCAGCACTCTTGGT	alt_556_upstream	70	33	62	54	31	62	51	46	29	54
GCCTGGGGGTGCCCTA	alt_556_upstream	46	26	42	46	21	38	21	37	27	45
TCTTGTGAGATTTGGT	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGCACAGCACTAG	alt_556_upstream	40	20	47	36	27	35	35	38	23	25
GAAATCTTATTACGAC	alt_556_upstream	69	44	93	78	56	51	50	74	54	69
TGACCCGCTGCATGGT	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
TAATCCAAACTTGTAA	alt_556_upstream	12	8	10	15	4	13	15	12	13	10
TCTTTAGGATCGATCT	alt_556_upstream	117	78	146	151	96	104	103	125	115	120
CATCGAATCATTCTAT	alt_556_upstream	98	51	96	74	64	84	42	98	49	83
GATCTCTCCTTGCACA	alt_556_upstream	68	70	89	87	63	78	67	93	72	87
CGCCAGCCTCAATATC	alt_556_upstream	44	46	73	69	44	46	33	75	57	64
GCAACTTTGACCTTCC	ref_556_upstream	17	17	20	22	19	20	19	26	25	23
TGCGCGGACTCTGACA	alt_556_upstream	47	32	47	57	41	49	35	36	55	43
TGAGTTGCGCCATTGT	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
ATCAAGTACTTTCGGC	alt_556_upstream	53	29	73	42	44	47	42	34	41	43
GGTAGAGTGCATTTCA	alt_556_upstream	51	42	70	37	43	30	42	42	51	42
GATCCGGCTCGTCTCT	alt_556_upstream	68	57	128	80	60	96	47	71	56	76
CTCTAACGTTTGGCGT	alt_556_upstream	20	11	19	11	3	9	9	14	6	10
AAAATAAGGTCTGTTG	alt_556_upstream	26	27	29	35	21	25	10	30	23	17
TTATGAACTTTTCCGT	alt_556_upstream	15	15	20	18	12	20	7	17	12	18
GTTAGAACTTTAACTA	alt_556_upstream	211	159	278	227	155	197	158	202	148	182
CCGATTGTAACGAGTC	alt_556_upstream	38	25	42	33	23	32	26	27	37	33
CATCCGAACGTGCCTA	alt_556_upstream	29	27	29	28	14	31	20	34	21	21
TCACACTTCCTGTTCC	alt_556_upstream	203	107	251	153	128	141	124	149	147	147
TGTAGGCAAGGCCTCG	alt_556_upstream	101	65	122	101	82	82	62	100	67	77
TCGCATGATCCCGACT	alt_556_upstream	0	1	1	2	0	0	0	1	0	0
TCATCTACAGCATTGC	alt_556_upstream	16	13	28	18	11	15	18	17	11	15
CGAGGCTATAACCAGT	alt_556_upstream	91	70	116	101	66	77	83	86	76	93
TGCGAATAACGTCCCG	alt_556_upstream	56	32	58	52	42	59	34	41	37	43
TCATGTATGCTTAACC	alt_556_upstream	8	10	21	15	9	9	11	7	13	8
TCTTGATTTGGCGATT	alt_556_upstream	66	50	67	52	39	45	37	57	34	38
CTGTGCGGAACTGGTC	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATGGCGATAACG	alt_556_upstream	0	0	0	0	0	0	0	0	0	0
AACCTAAAGCCTCCTT	alt_556_upstream	19	13	35	15	12	15	11	17	11	13
TGGGTAAGGTCCTTTA	alt_556_upstream	78	37	79	52	51	73	51	62	49	54
CCACTAGATTACTGAG	alt_556_upstream	5	1	4	3	2	6	3	4	2	1
TTTCGGCCGTTGTTAG	alt_556_upstream	98	58	82	73	66	87	62	82	53	63
ACAATTAGAACCACAG	ref_3478_fdr	5	3	5	6	9	6	5	6	4	2
CCGCAATGCTGATTGA	ref_3478_fdr	4	8	6	9	10	8	12	13	18	6
ATTGTCACAGGAGTTC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTGCGGTTTTGGC	ref_3478_fdr	4	27	6	5	24	4	19	6	29	1
CGAACTTTATGTATCT	ref_3478_fdr	30	44	47	31	53	24	35	34	48	20
TATGGATCGCTATCTA	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTTATAGTTGCTC	ref_3478_fdr	43	75	58	45	41	50	68	36	75	42
ACAGGAATTCGGCTCC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTGCCGACAGCAT	ref_3478_fdr	54	84	55	50	71	53	100	37	104	42
CACTCCGACTCTCTTA	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GCCTATACTGTGGTGG	ref_3478_fdr	9	26	12	10	22	11	19	10	24	19
ATTGTGAACTTTCACA	ref_3478_fdr	21	30	20	16	26	16	29	12	26	13
TGGCTCAGATAATTAA	ref_3478_fdr	4	11	11	5	7	1	9	5	3	3
TAGGCGGGAACGAATA	ref_3478_fdr	3	3	5	6	8	1	6	1	4	5
GGAACTGTTTCGTAAT	ref_3478_fdr	12	21	15	9	19	13	12	19	22	12
ACCGATTTCAGTCCGC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATGTTTTGCCAC	ref_3478_fdr	15	17	10	12	17	11	24	7	18	10
AAACCTTAACATCCTA	ref_3478_fdr	27	33	36	28	52	25	39	23	46	26
ACCGTCCTCTGTGCCT	ref_3478_fdr	3	18	3	7	23	12	26	7	17	8
GTCGTTGCGAGATTCT	ref_3478_fdr	68	81	90	58	96	60	71	58	70	53
TCGATAGCAGGCGATA	ref_3478_fdr	6	3	11	4	3	5	5	6	3	4
TAGTCTCGTTTTAAAC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTATAGTCCTTGG	ref_3478_fdr	71	102	65	66	97	56	87	54	102	72
ACATCACCACCTTCTT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGTATACTCAAGA	ref_3478_fdr	13	14	6	9	18	8	16	10	22	9
AAGGTGCTGGTCATTT	ref_3478_fdr	26	36	32	8	41	23	40	24	44	18
TTGGAAGATCGAAGGT	ref_3478_fdr	1	4	0	4	1	3	1	0	3	3
GCGATTACCTCATCTT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GGGCGTTTACGTCTCC	ref_3478_fdr	74	103	97	83	88	71	105	81	122	67
CGTCCCGGTGTATTCC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TTGAATCTGACGCACT	ref_3478_fdr	65	106	69	74	119	67	120	56	141	86
ATCATATACTATGTCT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTAAAGTTTTATG	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
AGGGATCCTCTAATTC	ref_3478_fdr	30	46	44	44	49	45	55	32	63	35
ATGGGGGCTTGCCTAT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CACACACGAGTGTCCC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTAGATGGTGCCCGTT	ref_3478_fdr	17	13	14	12	11	4	10	9	22	6
TATTTGGATCCATATC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGTCATCGCTTCT	ref_3478_fdr	10	10	11	8	13	10	13	9	8	9
AATAATTTCTCATTGT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATGTTTCCGAGG	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTTATCGTCTCC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TATCTCAGATATCTAT	ref_3478_fdr	19	24	20	29	32	18	27	18	20	19
GGCTAGTATAACCCTC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTGTCGGCCTTTG	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGTCCTATAGTGT	ref_3478_fdr	6	13	9	14	17	3	12	13	16	8
CCTTATCCAGACGCCA	ref_3478_fdr	5	15	9	6	8	4	8	5	7	3
TACTACCTTCCTGGCT	ref_3478_fdr	25	49	30	28	39	25	49	23	67	33
AATGAAGCAGCACCTA	ref_3478_fdr	11	28	28	27	21	16	34	15	21	16
AATCTGTAATCAACAT	ref_3478_fdr	22	22	26	16	32	28	34	24	35	33
ATCGGCACCTGTCCCG	ref_3478_fdr	17	7	8	16	12	10	14	8	17	13
TCGAAGGATCCGGCCA	ref_3478_fdr	21	31	33	19	36	18	43	22	28	14
ATGCATAACAAACACA	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GACCGGGGGCCCATGT	ref_3478_fdr	75	102	73	60	106	48	101	59	87	49
CGCTGGTGGCAAATGA	ref_3478_fdr	7	8	5	7	9	8	6	4	9	7
GGTTAACGTGGCGTGT	ref_3478_fdr	4	0	3	1	1	1	2	0	2	3
TTTACAGGAGCATCAG	ref_3478_fdr	23	26	19	12	26	18	34	13	33	21
GACTACGCCAAATGTC	ref_3478_fdr	12	14	7	6	17	10	23	13	24	16
GGACGAAATACGCTCA	ref_3478_fdr	6	7	14	7	17	12	24	12	12	17
GCTATTTCGATTCCCG	ref_3478_fdr	12	15	15	7	33	11	16	8	21	14
AAGGTACGTTCGACTG	ref_3478_fdr	34	44	47	31	54	32	64	26	47	28
CAGCATTTCGTCTTAT	ref_3478_fdr	41	84	26	38	60	32	60	28	67	29
GACCAGTGTTGTAGTG	ref_3478_fdr	46	101	43	29	80	43	82	25	92	29
AACGTCCCACCTTTGA	ref_3478_fdr	1	2	4	0	2	3	5	0	2	0
AATTTTAGGGGATAAC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CATTGATTGGGCAGCC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCGTATGGATAGCTAT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TGTACCTCATACACGG	ref_3478_fdr	24	27	25	26	37	31	41	22	36	21
TTTCTGACAGCCGCCG	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CTCTATGTGTTTAGTT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCTGCCGCGTTCG	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
ATGAACACCTGGATTA	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CAGCATAAACGCAGTT	ref_3478_fdr	6	25	11	15	25	2	26	9	24	5
AGCCGCGCAGACTATT	ref_3478_fdr	14	22	19	21	23	21	30	22	36	33
CCTGTTTAGAGGGCAA	ref_3478_fdr	8	11	6	7	11	5	15	12	12	5
CATCAGCCGGAAATTC	ref_3478_fdr	82	159	167	98	173	115	172	110	162	77
CGTCTAACCATCCCAA	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTTGAAGTTCGGCTCT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTCTAGGTTATCC	ref_3478_fdr	78	112	104	84	131	64	132	76	138	82
CGCTACTTACGTTTAA	ref_3478_fdr	39	201	57	45	184	36	191	29	206	36
GTCCTCCTATGATCGA	ref_3478_fdr	11	25	22	6	22	18	29	14	26	15
CTTGGTAATTAAGCTC	ref_3478_fdr	14	23	20	10	31	4	21	9	24	13
GGGAGCTTCTACGATT	ref_3478_fdr	0	0	2	3	4	2	3	3	3	3
GATTTGCATTGTTTTT	ref_3478_fdr	48	75	66	45	84	43	70	46	75	44
CAACCCAGGCCCGGTC	ref_3478_fdr	10	17	7	8	19	12	18	9	16	10
CATTGACTGGGCAGCC	ref_3478_fdr	115	178	126	120	156	91	150	82	186	91
ATTGTAGACCCCAGGT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TTATTCTCCGGATAAT	ref_3478_fdr	24	32	20	14	29	14	29	17	29	19
CTACTCCATGCGCTGG	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
CCTGAACTCCAATAAT	ref_3478_fdr	34	56	39	30	89	34	78	31	74	26
CCCCGTGGTGTGATCC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
ATCAGAAATCGCGGAA	ref_3478_fdr	30	57	42	42	54	32	54	37	67	46
GGTCCTAGAGTATCGT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGTTATTTTTAGA	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TACTCCTGTCTTTTTA	ref_3478_fdr	37	87	47	35	105	29	90	39	99	30
TTGCGCATATGAGATC	ref_3478_fdr	15	12	15	9	16	10	12	11	17	5
GCGTAGGCATGAGGTA	ref_3478_fdr	9	7	7	2	4	6	17	2	3	7
GTTATACTTTAATTTG	ref_3478_fdr	80	151	96	88	148	73	165	60	169	69
AGCGGTAAAAGGGGTA	ref_3478_fdr	15	10	9	6	12	12	15	10	21	5
AATCGGCTCGGGCGCA	ref_3478_fdr	20	28	22	25	33	24	40	16	31	14
TGCGTGACGACGTAGA	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCACCAGCAACTG	ref_3478_fdr	11	15	19	9	38	12	28	12	25	18
GTTGCTGAAGCTTATT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGACTGTTTGTAA	ref_3478_fdr	26	45	20	31	24	36	51	18	37	26
CGCGGCCTTATTGTCT	ref_3478_fdr	8	10	4	9	6	9	11	6	8	8
CGTAAGTGCTCAGACG	ref_3478_fdr	59	64	51	65	69	51	89	36	82	47
CTTCTAGAATTATGTT	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTATTGCACGGTA	ref_3478_fdr	41	87	40	31	81	47	75	39	71	41
GCCACGCGTATTCATT	ref_3478_fdr	116	184	134	142	213	108	197	95	201	117
CTTTCTTGCGTGCAAC	ref_3478_fdr	0	0	0	0	0	0	0	0	0	0
AAAACGCCCGCTTGAT	ref_3478_fdr	16	18	13	13	19	10	24	10	26	17
TCTGCTTACATTTGTC	ref_3478_fdr	58	116	83	59	112	53	115	67	116	56
TGTTACGCTGACCCCA	ref_5626_new	33	62	48	38	58	47	63	36	43	33
GTATCTGGCTTATTCT	ref_5626_new	8	13	5	7	7	4	4	5	8	5
TGATGCAATCTTGACG	ref_5626_new	72	69	75	52	88	68	59	63	83	52
CGGCCATTCAGGTTAT	ref_5626_new	13	31	17	8	31	15	31	18	33	17
ATTGTACGTTTGCAGG	ref_5626_new	0	0	0	0	0	0	0	0	0	0
GCTCCGATGGAGTTTA	ref_5626_new	43	78	59	50	59	43	71	49	61	32
CTCTCGTCTATTTACA	ref_5626_new	11	21	13	10	28	12	21	15	21	6
TATTTTCGTATAGTGA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TATGCAGGGGAGTAGG	ref_5626_new	13	21	26	16	20	13	23	10	34	11
AGTATGAATTCCTCTA	ref_5626_new	9	17	23	17	23	7	13	7	19	14
TGAATTTGATAGTTCA	ref_5626_new	91	136	103	88	171	95	149	100	153	85
GAGCTATCTTTAAGCT	ref_5626_new	10	16	14	15	25	11	14	9	20	6
CATTTATCAAATTATG	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TTCATCCGCGGTCGGA	ref_5626_new	18	29	10	7	26	14	29	5	33	14
CCGGGGGCATGCCCCC	ref_5626_new	10	21	17	15	23	18	25	5	17	6
TGACATCATTCTACAC	ref_5626_new	10	17	8	12	17	6	32	8	19	11
GAGCACTAAACAACCA	ref_5626_new	30	69	59	36	64	37	60	26	64	30
AAACTTGCAGTGCGTT	ref_5626_new	3	8	5	1	2	3	6	3	6	2
TATAACTTTTAATGGC	ref_5626_new	9	13	12	14	22	11	12	6	19	12
CGGCAGCGCGGTTCGC	ref_5626_new	123	136	117	123	145	119	176	83	170	88
TCTGTCATCGAGTTGC	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CGGTGACATTGTGCAC	ref_5626_new	1	6	1	1	1	0	3	2	4	1
CTTGTTACGTCAGTCT	ref_5626_new	9	19	17	11	26	15	17	10	22	11
ATAAGAAAGCAGCTGA	ref_5626_new	5	4	7	3	1	2	3	2	4	3
TACCTAAACACTGGTT	ref_5626_new	50	76	62	39	86	45	78	49	93	50
AAATGATTTTCTGCAT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CATCGAAGGTCATGTT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TGGCCCTACCTGTGAG	ref_5626_new	10	25	15	6	13	15	20	8	17	4
TGCTACGCCAACTTCA	ref_5626_new	16	24	15	12	24	12	34	20	30	14
TAGTTTTCTAGATGTA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
GGAGTGCAGTCCTGTC	ref_5626_new	23	20	23	8	19	10	31	19	31	4
ATTTCTTGCTCGGTTG	ref_5626_new	16	45	30	32	56	19	52	23	56	25
CTTAATCGGCAAGTTA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CCTCTTACCTAGTTTT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CGTCTATGTGGTCTTT	ref_5626_new	19	27	22	13	30	14	33	12	28	12
TCAAAGTATGGGGCCC	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TTGCTTATCTTCATAT	ref_5626_new	28	51	34	38	63	37	54	31	74	41
CATGTAAGCGAGTACA	ref_5626_new	8	22	15	17	19	20	12	10	19	5
GCTCCAGTTGGATCAG	ref_5626_new	49	71	43	44	82	49	88	53	103	49
TATTGGCATCAACAAT	ref_5626_new	0	8	4	6	5	2	7	2	2	4
CTCCCTGGCTAGAGTA	ref_5626_new	17	28	24	30	24	25	30	16	43	18
GAATTTATCGTAAGGG	alt_5626_new	47	60	59	56	70	59	83	53	98	51
CCAAACGAGATCCTTT	ref_5626_new	24	30	31	21	33	22	29	27	33	24
CTTGTATTCGGACATT	ref_5626_new	56	79	43	36	86	55	91	42	99	26
ATTTATCTCAGTCCTT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CTTGTATCATTTTCCT	ref_5626_new	31	39	33	29	45	23	42	21	42	29
TTCCATAGTATCCGTG	ref_5626_new	3	7	6	11	16	3	14	7	15	9
CAGGTTACTTTAACGT	ref_5626_new	21	39	21	26	22	20	33	18	33	17
TACACTTCACAATGGG	ref_5626_new	23	29	21	17	48	15	41	11	30	13
TGCCATTCCCTGTCCC	ref_5626_new	20	28	24	21	21	17	27	16	27	15
TGGGGCCCCGTGTCCG	ref_5626_new	0	7	5	4	18	6	4	8	6	7
CCTCTCGGCTGTCCTA	ref_5626_new	45	72	74	51	64	56	78	46	78	47
TCGGCATACTCGGTCC	ref_5626_new	9	10	8	5	13	3	4	5	9	2
ACTCCGCTTTGGTGTT	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TGGGCCGATTGGAAGA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CCGCATACCAAGGTAT	ref_5626_new	55	77	47	53	96	36	88	32	104	29
CCCCGTTGGTACGTGA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
ACAGGATTAACCCTAC	ref_5626_new	14	33	24	15	35	18	35	10	26	13
TTACATGGCGCGTATC	alt_5626_new	4	5	6	2	3	4	9	0	6	8
ATTTCGGATAAGGCAA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TTTTATCAGTGATTCG	ref_5626_new	52	76	55	31	61	43	109	46	79	44
TCGTTAACCTTTTGAT	ref_5626_new	53	52	68	41	58	61	76	41	55	37
ATAATTTTTCGAGAGG	ref_5626_new	41	60	58	38	61	36	69	44	58	27
CCGTGGCTGGGCGGTA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TCTTCAATCGTGTTTC	ref_5626_new	4	8	8	6	15	8	17	9	16	10
GCTTCTTGTCGGCACT	ref_5626_new	11	9	13	16	18	17	17	19	15	13
TGCGTATCCATGTTCC	ref_5626_new	0	0	0	0	0	0	0	0	0	0
GGATCCGAGATCTGGC	ref_5626_new	66	87	95	67	90	42	89	56	81	41
TCTTAGAAAATACATT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CATAAGATATGTTCTG	ref_5626_new	55	61	44	40	75	58	71	40	80	52
GATGATTTTCCTGTCT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
ACAAGTTGCTTCGTTC	ref_5626_new	48	82	86	55	79	53	85	53	82	49
AGTTCGGGCACTCTTC	ref_5626_new	27	50	39	34	43	22	60	30	52	27
CTACTTACATCAATGC	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CCCATCAGGGACATCA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CGCAATTACTGGTAGT	ref_5626_new	16	29	23	19	35	13	19	22	24	12
TTAGGGCTCTAGTCAC	alt_5626_new	26	24	28	10	43	10	32	14	34	14
GTAACATTTCTCGTCA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TGCGACGCCCACCGAA	ref_5626_new	108	182	120	126	143	118	223	98	171	109
CGTATTAAGTATTAAT	ref_5626_new	25	35	28	24	43	26	32	22	33	24
CCCCCCACGTTGGGAG	ref_5626_new	9	17	8	5	6	2	11	10	9	3
CTTTACTGTAAGGCTC	ref_5626_new	31	28	31	27	37	28	32	21	29	22
CTGAATGTTGTCACCG	ref_5626_new	9	8	7	11	16	14	8	10	13	10
TTACCGGCGTCCGGCA	ref_5626_new	0	0	0	0	0	0	0	0	0	0
TCGCCCTTCGCCGTTT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
GTCTTCCCTGCCCACT	ref_5626_new	92	87	120	127	88	95	99	82	99	90
GCCTGAAAGGGCTACC	alt_5626_new	102	133	113	102	135	110	171	81	190	91
GTGAAGGAGCGTTAGT	ref_5626_new	0	0	0	0	0	0	0	0	0	0
CGGCGATTGTGCGCTT	ref_5626_new	2	7	0	9	16	5	14	2	11	1
CATCCCTCGCTTTCGG	ref_5626_new	0	0	0	0	0	0	0	0	0	0
GTTGTTATGATTTCGG	ref_5626_new	24	28	26	27	36	14	35	22	34	20
GAGTATACCCGTGCCG	ref_5626_new	0	0	0	0	0	0	0	0	0	0
GGATTTGTGATTCAAT	ref_5626_new	3	8	11	4	6	5	7	5	16	2
GAGGCACTAAGCATAG	ref_5626_new	18	28	11	14	31	17	28	18	20	25
CGTTGCAAGTTGTCAC	ref_5626_new	3	4	5	6	6	4	8	3	12	2
GAATGGGAAAAGTCTG	ref_5626_new	50	61	60	42	76	34	84	38	93	58
ATCCCATGGCTTTTGG	ref_5626_new	18	47	23	28	42	26	44	20	47	19
TAGCCCGCTGACAGTG	ref_5626_new	18	17	11	14	32	7	14	12	19	10
AGGTGGCCCGGCCACT	alt_5795_new	7	24	8	9	23	14	41	12	29	20
CAAGGGCTATACGATT	alt_5795_new	0	0	0	0	0	0	0	0	0	0
ATGACTACGATACAGT	alt_5795_new	14	45	19	10	27	10	27	12	27	12
CGGCTTGGGTGGTCCA	alt_5795_new	2	7	1	2	10	3	6	3	9	5
AGGTAACGACGCATGT	alt_5795_new	0	0	3	0	0	0	0	0	0	1
CGGGTGATGATCCTGC	alt_5795_new	23	59	22	24	48	23	52	32	49	25
GGCGGTGCGGTTGAGG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
CCATAGGCGACTCGAA	alt_5795_new	20	40	23	30	51	24	49	17	47	18
TTATGAATAATTTTGG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TTTGTGGATCCCCGCG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TGCCTAGTTGCTTGGG	alt_5795_new	10	33	11	3	23	14	29	12	19	3
ATCGTATCTTTTTTCA	alt_5795_new	0	0	0	0	0	0	0	0	0	0
GATGCCCGTGCTTGCG	alt_5795_new	25	50	30	19	58	26	59	25	59	26
CAGTCAGCCTGCGTTC	alt_5795_new	4	12	2	2	14	1	10	3	9	2
ACAGCCCAGTGAGTCT	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TACCCTATGTTGGTTA	alt_5795_new	0	0	0	0	0	0	0	0	0	0
CGAAGTAACTCTTGCG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TGGTCTCGCCATGTAA	ref_5795_new	21	56	23	16	61	29	62	27	44	18
CGGCCTGGAGCTTAAT	alt_5795_new	1	12	6	0	4	4	8	4	5	2
CGGTCTCATTTCCACG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TTTTTTAGGATCCTCC	alt_5795_new	0	0	0	0	0	0	0	0	0	0
GTAACCCGTGGCAGAA	alt_5795_new	5	14	14	10	27	13	26	8	26	13
TGGTTTGTACGCCGGT	alt_5795_new	9	36	40	26	37	15	40	10	68	27
AAACAGGGTCCGGCCG	alt_5795_new	1	1	1	1	2	1	4	1	8	2
TCTCAGTCCGCTCTGC	alt_5795_new	13	29	13	10	36	16	40	10	25	19
CATTACTTCCTTATCG	alt_5795_new	2	3	1	1	1	1	8	2	8	0
CCACGGGGTCGCAAGG	alt_5795_new	20	63	41	17	42	23	42	19	48	18
CTCCACTGCTTGTATC	alt_5795_new	0	14	3	0	10	0	10	0	20	1
ATCCATTTCGACTGGC	alt_5795_new	1	12	5	1	21	4	18	4	22	6
GTCCACCCGTGGCTTT	alt_5795_new	17	32	18	9	36	17	30	18	32	16
TTGGTAGTTCTGCCGG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TATTCACATTGTCGGT	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TCTCGCACCTTCTTCG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TATGGCATTCCGGTGT	alt_5795_new	0	0	0	0	0	0	0	0	0	0
CTTGTCTGTATCTGAG	alt_5795_new	22	33	17	7	41	21	42	18	36	13
GCGTGTATATCGTTAC	ref_5795_new	26	102	28	37	123	20	101	27	116	29
TTAAAGATCGGTTCCA	alt_5795_new	9	10	5	13	27	11	19	6	22	6
TGGTCACTTAATCTGC	alt_5795_new	0	0	0	0	0	0	0	0	0	0
ATACGATCCGTATTGC	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TCGTCCAGCGCAACTA	alt_5795_new	0	0	0	0	0	0	0	0	0	0
ATGGCCGCGAGATAAT	alt_5795_new	0	0	0	0	0	0	0	0	0	0
CCTCTATTGTCCGGCC	alt_5795_new	24	79	18	14	111	25	114	15	117	25
TAACTCTAAGCAATGC	alt_5795_new	11	17	13	11	35	10	22	7	23	14
GGCCTACTCCAACTAG	alt_5795_new	9	16	9	3	11	4	13	4	11	5
AACGTGTGTACGTTAA	alt_5795_new	15	53	18	20	60	20	72	17	46	23
ATACTCGACTGTTAAT	alt_5795_new	8	18	13	8	26	10	30	6	21	14
GTGAATTTTGTACCAC	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TAGCCAGTCGGTTCAA	alt_5795_new	0	0	0	0	0	0	0	0	0	0
GCGTGTCCATAGCTGC	alt_5795_new	22	27	11	13	22	6	34	9	16	9
TTCTGTAATGCCCTTA	alt_5795_new	4	5	3	3	12	0	10	7	18	3
CTCCGGCAGAGCGCCG	alt_5795_new	30	52	22	31	86	15	59	20	78	28
CCTGCGGTTACATTGT	alt_5795_new	19	22	17	7	23	12	30	8	29	9
ACTTGGGAGTAATATC	alt_5795_new	9	34	13	9	26	8	30	6	36	9
GGGGTTGCCAAATTTC	alt_5795_new	34	81	54	39	73	35	83	37	82	38
TTCGACGCTTACCTTA	alt_5795_new	0	0	0	0	0	0	0	0	0	0
ATGTAGGGGGAAGTTA	alt_5795_new	11	18	10	7	22	12	26	5	29	9
GTATTTACATAGATTA	alt_5795_new	10	28	12	17	39	13	40	13	30	19
CCCCTATGTAGACATG	alt_5795_new	21	21	25	13	21	21	44	11	32	9
TATTTTTTCTAAGATT	alt_5795_new	2	8	1	1	4	3	4	2	9	1
TTTGCCTTGAGTCTCT	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TGACCGGAGGTTGATA	alt_5795_new	4	9	13	6	18	4	9	6	6	3
TAGTGCCTTAGTTAGA	alt_5795_new	4	12	4	7	8	4	15	5	15	1
TAGTTCTTCTAATTTT	alt_5795_new	42	65	48	42	80	30	82	35	69	32
TACCTCGCTGATTATG	alt_5795_new	4	6	4	0	4	4	1	0	9	2
CTTCTGCTTTCGCACG	alt_5795_new	21	29	27	18	25	18	35	14	31	10
CCATATTGAAAAGGAT	alt_5795_new	0	7	0	2	6	1	2	1	12	1
GATTCCTTCATACTCT	alt_5795_new	5	13	11	7	19	1	23	4	16	6
TGTCCCGTCGTTCAGC	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TTCATCGGATCGTGCC	alt_5795_new	0	0	0	0	0	0	0	0	0	0
CACGGGTTTTACCATT	alt_5795_new	10	18	11	7	25	7	24	12	24	4
AGTTTACCGTACGTGG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
CTGCGGGCTGCATCAA	alt_5795_new	12	26	16	11	31	16	34	10	42	20
CCTTTTCCTGGCCCGG	alt_5795_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTAGGTCTCAT	ref_5795_new	5	19	3	7	12	8	28	7	22	2
GCGTTAGGGGTCGTAA	alt_5795_new	23	42	38	21	42	25	50	19	59	25
GTATCTTGTCCAAATG	alt_298_RC	60	87	78	70	103	71	84	66	94	49
TCTCTTAAGGGGGCCT	alt_298_RC	10	18	24	15	19	12	26	12	21	10
TCTGTTTGGCTGCGGT	alt_298_RC	41	60	57	45	44	48	66	48	73	53
GCCCATGCTAATCCGA	alt_298_RC	7	18	12	12	10	5	13	12	17	15
AGGGCAGATCCATTCG	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TGGGGTAGTTACTACC	alt_298_RC	94	104	125	113	118	94	133	79	96	83
GTCAGTTCCGCCGGAT	alt_298_RC	20	32	28	24	25	25	27	18	31	22
CGCCTGGAGGGAAGTT	alt_298_RC	93	158	124	111	143	96	144	92	157	104
ATGCATCGTACACAAG	alt_298_RC	0	0	0	0	0	0	0	0	0	0
AATAGACCCATACAAA	alt_298_RC	0	0	0	0	0	0	0	0	0	0
CGAGTTTACTGCTGCG	alt_298_RC	27	38	35	31	29	42	41	20	42	22
GCCTTGACTCTATGCA	alt_298_RC	7	14	11	12	15	7	20	11	27	7
CGTCTGTTCTTCGCCT	alt_298_RC	0	0	0	0	0	0	0	0	0	0
CGTATCTGTCACATTT	alt_298_RC	40	63	57	45	59	51	59	39	57	48
GAGCTGTCGTCACAGA	alt_298_RC	41	50	52	30	48	46	37	34	37	36
TGTATGTAGTCAAAAA	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TTGTCTGTGTCGAGAT	alt_298_RC	3	6	2	1	2	1	4	2	1	5
CTTTGGGGCCTGCAAG	alt_298_RC	20	32	24	21	33	31	23	14	31	17
CGCAGCAGCTACGTGG	alt_298_RC	9	26	15	11	17	5	19	8	20	9
CCCCGCCATCAAGGAC	alt_298_RC	9	13	20	25	30	26	21	23	26	21
TTGAAGCGGGTGGTTC	alt_298_RC	0	0	0	0	0	0	0	0	0	0
ATTGTCCAACAAAGGG	alt_298_RC	0	0	0	0	0	0	0	0	0	0
ATACGGTTCCCTAATA	alt_298_RC	58	81	68	51	85	68	90	60	83	57
GGAGTCCTCTTCTGAG	alt_298_RC	28	34	43	34	28	36	44	29	34	45
ATCGCTTTCGTTGTAT	alt_298_RC	96	77	102	88	84	77	85	78	96	65
TCGTCACGGCAATAAC	alt_298_RC	0	0	0	0	0	0	0	0	0	0
GGCGGATTTAGTCTTT	alt_298_RC	103	165	142	115	110	137	137	94	122	103
GTCGTCCTTTTCCGAT	alt_298_RC	59	76	79	55	64	59	89	48	90	52
CTTGTCTGAGATTGCG	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TAGGGGGATTCTCCCA	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TCGGACCTAACCTAGG	alt_298_RC	10	18	20	18	17	13	19	17	20	16
TTCCAGTCGTAAGAAA	alt_298_RC	13	15	16	9	13	11	12	12	15	8
GCTCTTTAACCTTGAC	alt_298_RC	146	213	175	145	199	130	224	139	244	122
AACTACAGGGATTAAC	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TCATGGTTCTTAATGG	alt_298_RC	10	10	13	8	7	7	4	10	14	11
TGGTAGCTGATCCTAC	alt_298_RC	7	18	6	13	16	19	18	17	15	16
GTCTATATTACTGTAA	alt_298_RC	23	45	30	22	33	21	33	28	39	33
GAGTTATTTGTGCGTA	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TATTCTATACTGCAGT	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TGGTCTCCTCGTGTAC	alt_298_RC	5	24	3	7	30	2	22	2	28	4
TCAGCAGCACGTTCTT	alt_298_RC	47	52	55	35	47	46	49	44	52	35
TGTGTTCGGAGATATC	alt_298_RC	68	72	72	73	69	60	65	60	77	53
CTCTAGTGGCAGGGTC	alt_298_RC	101	166	125	102	139	92	150	100	123	87
AATACTACTCTCTAGC	alt_298_RC	198	219	207	180	241	172	259	162	231	170
TTGACGGGAACTGACA	alt_298_RC	9	13	9	12	14	6	16	6	22	14
TGATAGGTTCAAGACG	alt_298_RC	12	13	13	14	13	11	17	11	18	16
GAAGTGCTTGCGAATG	alt_298_RC	0	0	0	0	0	0	0	0	0	0
CGCTCCAATCCTTGGC	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TTACCCTCCTTCGGCA	alt_298_RC	0	0	0	0	0	0	0	0	0	0
GCACCCATCAATATAT	alt_298_RC	21	22	24	20	19	19	23	21	26	19
TTTCCGCTGGTCTGAG	alt_298_RC	31	19	21	13	25	15	22	18	25	13
TACTAATATCCGTGTC	alt_298_RC	59	68	60	53	74	53	65	47	80	64
TAGAGGGTTTTTCTTA	alt_298_RC	65	64	61	55	61	49	64	58	84	41
GCTCAATCACTTACGT	alt_298_RC	8	14	13	11	16	9	10	10	13	12
TGGAGCATTGCGCGGT	alt_298_RC	11	16	25	13	14	31	14	18	27	16
ATCTCACTGGGCAACT	alt_298_RC	28	33	27	23	26	26	45	26	21	19
GGTCTCGACAGTCTTG	alt_298_RC	19	14	17	13	20	18	30	17	20	24
ACACAATGTTGGCGTG	alt_298_RC	57	61	55	47	78	56	72	44	77	52
CCATTCATGATGAGCT	alt_298_RC	9	21	22	17	29	12	22	14	21	11
AGGCATCTTTCTTGCC	alt_298_RC	18	13	18	17	15	7	17	7	18	12
GGTCAAAGTGGTTACA	alt_298_RC	13	15	12	15	13	8	4	6	8	9
GCTACCTTTGATCAAA	alt_298_RC	3	5	5	0	5	2	5	3	4	1
TCGCATATATTGGCTT	alt_298_RC	21	24	21	14	28	17	45	24	30	18
CCCCGCCACGTGACAG	alt_298_RC	17	24	35	18	27	11	23	15	20	22
ATCACTAATCTGTTCT	alt_298_RC	55	78	63	41	67	40	64	47	75	49
CGTCACTTGGTCACCC	alt_298_RC	26	23	20	24	19	17	33	20	19	12
CTACTTGTGCCCGATG	alt_298_RC	20	31	32	22	45	16	30	21	29	19
CTCTGAGACGGGCGTG	alt_298_RC	33	45	41	52	53	38	57	35	54	22
GAGGCTGCATAATGCT	alt_298_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCTTCCGGGGGC	alt_298_RC	20	24	36	33	33	25	42	23	28	25
AGTTCGATACTCTCTT	alt_298_RC	13	18	15	19	14	11	13	11	17	12
TAAGGCTTCCCCTATT	alt_298_RC	58	114	81	66	90	72	126	54	96	47
TAGCTTACTTTTAAGG	alt_298_RC	47	75	49	53	77	52	76	41	61	49
TCCATTATTTTGTCAT	alt_298_RC	0	0	0	0	0	0	0	0	0	0
ACCCCGACTATATACA	alt_298_RC	15	28	21	17	23	23	32	23	27	27
TGATTACGAATGTCCC	alt_298_RC	33	80	35	33	85	18	82	31	87	27
GCAATATAACCGTCAG	alt_298_RC	0	0	0	0	0	0	0	0	0	0
CCCGTTTTGTGACAAT	alt_298_RC	0	0	0	0	0	0	0	0	0	0
CGCACACCGGAAACAA	alt_298_RC	43	48	44	33	53	34	55	35	66	36
CGATCGTTCCCTTATC	alt_298_RC	2	0	0	0	0	1	3	0	0	1
CTCGGTAATCATGTTT	alt_298_RC	115	109	131	107	117	100	119	102	123	98
GTTTGAACTACTGCGC	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TATGGAAGATTTATAT	alt_298_RC	0	0	0	0	0	0	0	0	0	0
GCTTGCCTTATTCTGG	alt_298_RC	69	138	117	76	142	87	152	87	139	78
CGGCCAGACTACCTAA	alt_298_RC	0	0	0	0	0	0	0	0	0	0
TTAGTACTCGCTGTAC	alt_298_RC	69	60	68	47	52	59	77	68	88	50
ACGGTGCCTAGCTCAA	alt_298_RC	21	40	20	29	31	24	24	20	32	20
CAATCCGGAGCTTGCT	alt_298_RC	0	0	0	0	0	0	0	0	0	0
CTGCACGCTGTGCACG	alt_298_RC	14	17	12	14	19	6	12	10	13	11
TGCAGTCAGGATTGGT	alt_298_RC	10	9	6	14	9	5	3	3	9	2
ATCCGGGTTATTGAGT	alt_298_RC	41	37	35	33	47	28	36	22	43	32
GTCGTATCAAGGTATC	alt_5928_new	9	6	1	3	6	6	4	2	5	4
GCGAATGCAGCGACCA	alt_5928_new	14	26	17	16	22	11	28	19	21	11
GCTTCTCTTAAGGAAT	alt_5928_new	5	9	4	7	10	6	8	6	3	5
TCTCTTGCGTTAATCA	alt_5928_new	20	26	17	10	22	22	29	14	21	18
TATTCGATCCGCCGGT	alt_5928_new	36	35	34	37	48	26	42	26	45	36
CCACTTCCACCTAACC	alt_5928_new	1	17	3	1	12	0	11	5	21	1
TTTAGCGCACTTAGGT	alt_5928_new	21	28	33	16	18	22	22	33	57	21
TTGCAAATCTCGCTCA	alt_5928_new	13	16	15	4	9	18	18	14	19	3
GTTCCTTGTTAGCATT	alt_5928_new	44	53	45	44	70	45	71	45	47	43
CACCTTGGTTCTTAGC	alt_5928_new	3	5	2	1	2	4	5	0	5	4
TTACCTGGCTCATAGT	alt_5928_new	8	19	23	18	28	17	17	12	21	8
GTCTCTGCACAGCCGT	alt_5928_new	127	118	121	93	131	95	179	98	132	107
TGCCCGTTATGTGCCC	alt_5928_new	106	155	130	109	157	114	171	131	177	103
AGCCATTCAGTCGGCG	alt_5928_new	2	6	0	4	9	4	8	5	8	4
CTACTTGGCGCGACGA	alt_5928_new	26	33	38	27	33	21	41	27	29	32
CTTTCGTTGGACAGCA	alt_5928_new	18	46	29	20	43	19	43	31	44	30
TGCTCTGTGTAAACAG	alt_5928_new	6	6	0	7	4	6	6	0	9	4
GTCCAAATATTGCGAC	alt_5928_new	62	48	54	39	53	41	68	34	57	38
CGGTAGTAACTACCTA	alt_5928_new	38	27	27	28	45	29	42	21	42	31
CTGCTCGATTCTTGGC	alt_5928_new	13	27	27	19	28	16	30	12	24	22
TCAACACGGACTTTCC	alt_5928_new	30	42	49	38	42	38	79	40	45	18
ATAGGCCCATCAGATG	alt_5928_new	39	68	93	65	60	47	81	51	96	52
AGGCAGTGTTGTTTCG	alt_5928_new	20	24	24	25	19	28	30	17	31	13
CTTGACTTGTTTTCCT	alt_5928_new	100	121	107	120	115	81	124	89	120	90
GCTTGGTCTGCTTGCT	alt_5928_new	23	30	19	22	17	19	19	23	31	14
TTTACCGGCTCGGTTC	alt_5928_new	10	28	24	17	17	12	25	9	23	21
CGCGTGCGCGACCGCT	alt_5928_new	44	69	49	34	53	49	55	35	57	33
GTTCGCCCGCGATTAT	alt_5928_new	43	65	63	38	68	59	60	42	70	45
TAAAAGCATAAAGCGC	alt_5928_new	0	0	0	0	0	0	0	0	0	0
CTTTCCGCCTTGCCTA	alt_5928_new	18	31	12	12	28	11	26	14	23	10
TCACTCATAAGATTGG	alt_5928_new	0	3	1	0	3	2	3	0	0	4
GCGTAAGCGATTCTGC	alt_5928_new	9	16	13	11	11	10	12	11	4	11
TGTGCCAGTTCACAAA	alt_5928_new	37	32	34	25	32	18	54	19	35	9
AAAGTACGATTGAGTC	alt_5928_new	10	8	13	10	11	17	15	7	10	14
ATCCCCTTGAACGGGG	alt_5928_new	38	52	64	45	65	41	59	25	67	42
CGGCTGCAGTATCGCT	alt_5928_new	20	22	33	19	26	16	33	28	41	27
TGCTTAGAAATTGAAG	alt_5928_new	0	0	0	0	0	0	0	0	0	0
TGTCTCGATTGGGAAA	alt_5928_new	80	103	91	78	117	78	118	64	107	54
ATTCATCGTCCAGTCT	alt_5928_new	29	24	34	23	30	22	33	16	39	16
CATTCTACACGGAGAC	alt_5928_new	0	0	0	0	0	0	0	0	0	0
CGAAATTGGAGCTTCG	alt_5928_new	0	0	0	0	0	0	0	0	0	0
ACGGACATATGTATTT	alt_5928_new	26	16	20	21	16	24	22	11	29	10
TACACCTAGAGAGCAG	alt_5928_new	10	19	18	20	15	10	25	11	19	9
ACCTGATATCACTCTA	alt_5928_new	30	50	25	25	42	24	27	27	55	16
AAATAAAGCGCCCTGC	alt_5928_new	11	14	15	8	9	11	4	12	11	10
TTCGCTATGGTGCCGA	alt_5928_new	10	18	10	9	10	8	4	9	12	3
ATGCTCGGGTGCCTCG	alt_5928_new	32	37	33	30	56	25	37	50	33	31
TCCCCCATATTAGTTC	alt_5928_new	3	45	2	1	19	3	26	1	27	4
AACACAACTTGCTTAC	alt_5928_new	3	51	15	7	44	8	38	4	46	5
GCAACGTTTAGCTCGT	alt_5928_new	0	2	1	5	11	3	2	0	3	1
CTTAAATGGCGAGTCT	alt_5928_new	78	77	91	79	92	70	108	73	93	73
TTCGCTTGACTAATGC	alt_5928_new	38	71	39	31	79	34	64	31	82	38
GGATCACATAGAATCT	alt_5928_new	0	0	0	0	0	0	0	0	0	0
AATCAGGTCAGTATTC	alt_5928_new	8	23	9	9	18	14	19	10	30	12
TTCCAGTCTCATTTTC	alt_5928_new	95	100	123	88	112	97	134	87	129	80
CACCTGGTGTAGGAAT	alt_5928_new	40	53	49	37	61	19	63	32	54	41
GGTCGCTAGAGACGTC	alt_5928_new	430	613	539	429	604	455	605	415	643	427
TATTCATCTTTGCCGT	alt_5928_new	0	0	0	0	0	0	0	0	0	0
CAGTTCCTAACACTAA	alt_5928_new	0	0	0	0	0	0	0	0	0	0
TTCTAACGCGGCCTCC	alt_5928_new	151	163	157	154	174	137	186	123	188	135
TTTCTTTTTCCACTAC	alt_5928_new	0	0	0	0	0	0	0	0	0	0
TAAAGAGCCTAACATG	alt_5928_new	3	5	0	0	1	1	2	1	1	1
TGACTGCATGCATTAA	alt_5928_new	66	88	68	62	111	62	102	50	90	58
CACCGGGCCAAGTTGG	alt_5928_new	0	0	0	0	0	0	0	0	0	0
TGGGCCGGCTGATGTA	alt_5928_new	45	59	45	39	43	42	56	24	51	44
GATTAGTGCCGACCGA	alt_5928_new	2	5	7	1	5	1	8	5	3	2
ATAGAATGTTCTACAA	alt_5928_new	6	21	15	13	12	16	20	9	24	10
TTGATCTCACATACTT	alt_5928_new	16	21	8	7	20	8	41	5	17	3
ATCTCCCATAGAGGGG	alt_5928_new	0	0	0	0	0	0	0	0	0	0
ATACAGCGATGTTCCT	alt_5928_new	0	0	0	0	0	0	0	0	0	0
CGAATCGCTTTTGTGG	alt_5928_new	24	34	38	23	32	24	28	20	29	17
CCCCACCGATCCCTAG	alt_5928_new	6	11	5	4	4	5	11	6	11	7
AGTGCTGATACCAAAT	alt_5928_new	61	57	81	51	73	56	76	72	86	57
TTCTGTCCTTTCATGA	alt_5928_new	24	29	24	13	23	17	19	11	23	18
CTTTATAGTGAACTTC	alt_5928_new	0	0	0	0	0	0	0	0	0	0
ACACTGCTATGGTCTA	alt_5928_new	0	0	0	0	0	0	0	0	0	0
TGTTAGGACCATCGTG	alt_5928_new	0	0	0	0	0	0	0	0	0	0
AGCTTCCTCCGTGCGC	alt_5928_new	41	60	50	57	53	36	40	38	47	33
GATTCTTTTCGCTTGT	alt_5928_new	145	170	163	142	181	136	203	118	182	106
TCCCATGGCCGCAGGG	alt_5928_new	18	35	51	38	42	25	44	25	42	41
TGCATTTGCCGTAGTA	alt_5928_new	13	38	27	20	30	27	42	32	27	14
ATCGTTTGATTGTTTT	alt_5928_new	0	0	0	0	0	0	0	0	0	0
TTAAAGTTCGCAATTA	alt_5928_new	0	0	0	0	0	0	0	0	0	0
GTGCCTCTCTACCTTC	alt_5928_new	0	0	0	0	0	0	0	0	0	0
TTATTATTTATTGTTT	alt_5928_new	75	68	67	68	93	58	99	66	72	42
TTTGGGCTAAATTTGA	alt_5928_new	1	2	0	1	0	0	1	0	0	1
ATTTGCGCGATTAAGC	alt_6084_new	189	202	196	164	166	156	167	151	197	151
TTGCGGGCTCATTCCT	alt_6084_new	0	0	0	0	0	0	0	0	0	0
TAAAAAGTCAATCGTG	ref_6084_new	407	522	464	371	478	373	539	305	598	330
CAGGTCATGGCGTCAT	alt_6084_new	25	16	41	18	16	21	20	24	21	17
GCCCCATGTCCCCCCG	alt_6084_new	0	0	0	0	0	0	0	0	0	0
TGGGGATGCGGTAGAA	alt_6084_new	23	18	24	25	20	21	17	18	23	18
AGCAAGCGCAAATTTT	alt_6084_new	113	167	135	126	158	126	177	107	167	108
TTTCTATGTTTTTCCA	alt_6084_new	0	0	0	0	0	0	0	0	0	0
GCTCTGGGATGTTAAT	ref_6084_new	171	213	212	184	229	174	232	157	228	146
TTTTCCTATGTTCCGA	alt_6084_new	80	105	109	104	117	100	87	90	113	75
TCGGGTGTCACGCCGT	alt_6084_new	17	12	17	9	14	6	14	14	13	18
GCTCCTGCCTCTCCGT	alt_6084_new	5	3	4	1	7	11	14	5	4	4
CTCATACACTTCTCAC	alt_6084_new	24	17	26	33	37	33	38	23	27	30
ATCGTACTCCACTCGA	alt_6084_new	78	105	105	92	133	82	124	91	127	69
ATACATTGGGGCACAA	alt_6084_new	67	61	69	55	60	42	59	50	68	54
GTAAACGCGAACATTT	alt_6084_new	7	20	22	18	17	12	15	9	19	11
CGCTCCAATCAGGTTT	alt_6084_new	15	18	31	23	21	26	28	17	24	24
CAAAGCCCACTTTTGC	alt_6084_new	9	8	12	8	14	13	12	21	10	9
ACAACGCCCGTTCTAC	alt_6084_new	11	14	16	8	27	8	24	5	18	5
GCCCCATGTCACCCCG	alt_6084_new	261	231	293	286	283	240	254	249	240	222
CCAGGAACCCAAGTCC	alt_6084_new	39	53	67	53	49	47	57	31	70	41
CACTTCTCTGTACCCA	alt_6084_new	0	0	0	0	0	0	0	0	0	0
GTACGTAGTACCTAGC	alt_6084_new	2	9	3	1	7	4	3	2	7	1
TTAGTTTCAGGATCAA	alt_6084_new	87	93	94	93	83	89	85	77	103	80
CTAATACGCTCTGAAC	alt_6084_new	42	58	53	34	61	19	61	24	61	46
CGTAATCTACCATGTT	alt_6084_new	13	10	11	12	7	7	11	9	10	11
CTCTGTTTTACCCTGC	alt_6084_new	32	42	62	54	51	52	50	46	58	40
TGGTGGACGAATTCCC	alt_6084_new	6	9	4	6	7	4	7	2	7	3
TTCGATAGTCTGTGTT	alt_6084_new	4	15	9	8	14	12	13	3	8	4
GTCAATCAACTGCATT	alt_6084_new	0	0	2	2	0	1	1	1	4	1
GTCCGTATACGCTCCT	alt_6084_new	0	0	0	0	0	0	0	0	0	0
CTGCCATCCTTACCTT	alt_6084_new	2	61	9	4	52	6	56	14	52	7
CGCCTCGTCCTAACTA	alt_6084_new	38	42	32	33	52	29	47	26	46	25
TGATTGGGAGCGTAAA	alt_6084_new	9	12	11	5	15	16	14	15	10	6
CATTTAAGGGTTTGGT	alt_6084_new	34	52	50	27	38	31	39	44	45	37
TCCTATGTCTCTAAAT	alt_6084_new	0	0	0	0	0	0	0	0	0	0
AGCAATCAGCGCGCGG	alt_6084_new	6	5	3	3	6	3	5	7	2	4
CTGTGAGGGGTCGCTG	alt_6084_new	130	147	187	151	158	146	158	127	166	139
GAGGACTAGTCACCTC	alt_6084_new	54	58	66	66	75	52	82	59	97	54
CCAGTCATGGCTCTGT	alt_6084_new	13	39	8	10	33	2	37	9	42	12
AAGGTTCTTAGCCAGG	alt_6084_new	0	0	0	0	0	0	0	0	0	0
CTGCATGTCAGCCGGT	alt_6084_new	79	137	125	105	113	73	115	97	119	72
CTTACCCAATTTTCTC	alt_6084_new	10	9	17	14	14	14	20	5	10	19
GTCGTACTCCTGCCCG	alt_6084_new	52	67	80	56	51	54	84	57	67	70
GGGGGGTTTTTGTAAT	alt_6084_new	60	57	88	49	60	59	48	54	65	62
AGTGCTGACACTCGGG	alt_6084_new	23	30	25	32	29	30	35	28	43	21
ATTTTCTATGTGGCTC	alt_6084_new	77	46	78	61	49	62	73	67	58	51
GGACCACGTCGCCGTG	alt_6084_new	2	3	7	4	5	2	6	4	1	7
CCAATCACGGAGCGCT	alt_6084_new	5	14	12	8	5	7	12	10	8	12
TTCTGTTACTCGCTCG	alt_6084_new	10	12	9	7	13	14	14	10	15	13
GAATATGCAACTGTGT	alt_6084_new	35	81	57	53	77	49	99	50	106	41
TCCTATAAGCCTGGTT	alt_6084_new	0	0	0	0	0	0	0	0	0	0
CTCTATTTTGCCTGAG	alt_6084_new	0	0	0	0	0	0	0	0	0	0
AACACGTTCTCTGACG	alt_6084_new	105	109	121	78	113	82	116	90	115	111
GCAACCGCCTTTATCG	alt_6084_new	64	94	72	70	112	52	101	76	84	60
CAGTAAGTGGCCGAAA	alt_6084_new	25	23	30	26	30	31	25	25	19	17
CGTTGATTAGTGGAAG	ref_6084_new	24	14	22	18	15	8	19	23	18	15
TTCCCTCCGTCTGCTG	alt_2112_fdr	65	70	57	43	73	58	81	37	64	53
ATTCATCATGTCGTCT	alt_2112_fdr	8	9	15	13	10	11	15	5	11	10
CACTGAGCAAAGCGTT	alt_2112_fdr	105	101	112	114	110	109	131	96	117	98
TGTTTATATGTATCTT	alt_2112_fdr	11	16	27	16	11	20	16	21	13	14
GCCGAACCGCCCTCTT	alt_2112_fdr	20	21	19	16	18	7	29	13	28	20
TCTTGTATAGATGCAT	alt_2112_fdr	184	159	184	175	143	158	180	140	180	166
GTATCTCTGCAGTATT	alt_2112_fdr	5	8	14	7	8	9	8	17	13	8
AGAATTAGTACTTCGT	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGATCAGACATCA	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
ACATCCAGCTCAGCAT	alt_2112_fdr	23	28	34	23	25	25	42	19	30	16
GCTTTTATCTCAGACC	alt_2112_fdr	24	14	26	31	30	27	25	19	24	17
GTCCATCGGAGCGTTC	alt_2112_fdr	482	411	582	570	434	492	463	469	467	466
CGAGACCTTGACTGAT	alt_2112_fdr	40	38	55	41	51	36	50	32	50	29
CTTTTATTTTTCGCTG	alt_2112_fdr	10	9	11	6	16	10	11	6	7	2
CTTCCTGACTCTATAT	alt_2112_fdr	89	62	81	60	64	86	88	63	74	78
GAATACCCTCCCTTGT	alt_2112_fdr	6	11	5	6	11	5	6	5	9	5
GTGATTAAGGTGCAGT	alt_2112_fdr	5	6	1	5	9	5	8	5	3	7
CTCATAAGAATAAGGT	alt_2112_fdr	20	21	18	22	13	15	24	24	24	10
GGATGCATTATGAATA	alt_2112_fdr	25	14	15	14	15	20	23	15	17	8
CATCTTTGGTGGGCAG	alt_2112_fdr	22	16	24	16	20	9	24	14	13	17
CAGTTCTTTCTTTTTC	alt_2112_fdr	222	147	245	200	160	193	162	173	131	176
AGGATCCTGCGCCGTG	alt_2112_fdr	27	13	13	20	27	27	28	28	24	25
CCGAGAAGGCGGCCAA	alt_2112_fdr	122	80	138	126	118	94	99	118	104	107
CTGATCTCACGCCCGG	alt_2112_fdr	15	18	21	22	25	24	30	24	30	19
GATGCGTTGGTCCTAG	alt_2112_fdr	38	46	62	34	47	49	41	45	48	39
TCTTCCCACTTTGATT	alt_2112_fdr	49	46	49	36	40	46	38	24	37	38
TGCCTCTCTCCTGGGT	alt_2112_fdr	37	34	34	40	40	44	39	39	29	48
TCGTGCGTTTCTATCC	alt_2112_fdr	3	0	0	0	2	1	0	0	0	1
ATTTCGTTTAAAAGAA	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
GCTATCGGCAAGGGTA	alt_2112_fdr	17	20	24	34	22	21	19	21	26	13
GTACTCCAGATTCGAG	alt_2112_fdr	26	20	25	18	15	17	17	15	23	16
AACCCAGGTTAGCACG	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTTAGGCTTTCGC	alt_2112_fdr	5	4	8	7	7	4	3	3	16	4
CCCTGCACTTTCTTTA	alt_2112_fdr	4	5	2	5	7	5	10	5	9	7
CTCCAGTTAGCCTCAG	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCTATGCCAATCG	alt_2112_fdr	56	63	80	73	55	65	61	63	55	59
GGGCACGCTCTCAGAG	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
GGCCACCTTGCCGTAT	alt_2112_fdr	26	16	22	22	13	18	24	17	34	22
CACGCCCCCCTCGCGC	alt_2112_fdr	14	18	11	7	20	11	24	6	18	5
AGCGGTCGTATACAGA	alt_2112_fdr	220	188	294	164	203	211	226	230	218	196
GTGGCTAAAATGGGGG	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGCCTAATATAGC	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
ATGAAGCGGGACGGCA	alt_2112_fdr	57	60	77	80	52	64	58	74	78	61
ATCTTAAGTAAGAATT	alt_2112_fdr	125	104	115	113	125	109	102	106	93	109
CCTCTTTTGAACGTTG	alt_2112_fdr	76	135	67	56	141	76	115	67	164	58
CAGGGTAGTTGACTTA	alt_2112_fdr	99	85	146	121	99	116	120	107	92	96
CATCTCCAATGTCTAC	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
AAAGGCTTGAAGATTG	alt_2112_fdr	41	33	38	34	35	45	35	38	41	39
TGATCTTTGTTTTTTA	alt_2112_fdr	11	15	7	9	12	9	9	9	7	11
ATTCTTTTATACAGTC	alt_2112_fdr	22	15	15	20	17	16	25	19	22	18
CCTAGAGTTGAATTTG	alt_2112_fdr	21	22	33	25	20	24	29	24	30	21
AGAGTTGCCTTGATCC	alt_2112_fdr	83	76	111	96	88	95	95	84	102	90
ATTTGCTCGCGCTGAG	alt_2112_fdr	16	13	27	26	11	13	8	10	10	13
ATGACACTTAGTTCTG	alt_2112_fdr	0	0	0	0	0	0	0	0	0	0
TACGTGTTTTGATTAC	alt_2716_missing	46	112	59	49	105	41	100	39	112	39
CTCTTTGGTATCTCCG	alt_2716_missing	53	129	56	51	148	51	145	65	153	53
TCCGACTCGGGGCGGA	alt_2716_missing	0	0	0	0	0	0	0	0	0	0
TGGGTGGGGCAGGGCT	alt_2716_missing	2	16	3	4	12	8	16	4	12	6
CTGAAACGTCGCGGAC	alt_2716_missing	2	11	6	2	8	0	6	1	9	1
ATGCTCTGTAAGGTTT	alt_2716_missing	29	70	43	31	62	26	79	24	74	42
TCTTTTTGCAATTTGA	alt_2716_missing	60	109	66	38	125	45	120	50	124	59
TGTTTTCCCAAACGTA	alt_2716_missing	46	84	62	47	82	46	73	49	113	35
AGCAGCGTTGCACCTT	alt_2716_missing	0	0	0	0	0	0	0	0	0	0
GCAGTTGCGTCAGGGG	alt_2716_missing	6	9	8	1	9	9	8	12	15	10
ATGGTTGACTCTAGCG	alt_2716_missing	23	58	44	33	34	39	62	31	50	13
CTGTAAGCTGTATGGA	alt_2716_missing	11	28	17	7	29	14	34	10	21	7
GTTAACATATAGTAAT	alt_2716_missing	0	0	0	0	0	0	0	0	0	0
CGGGGGATACGTAGTT	alt_2716_missing	56	112	64	48	102	56	101	47	112	51
TGTTGAGGATGCAGAT	alt_2716_missing	29	69	42	23	47	36	78	33	67	42
CATGTATCAGCAGCGG	alt_2716_missing	7	27	11	14	36	9	14	12	29	20
GAGACATGGCTTGCGC	alt_2716_missing	9	21	10	15	14	15	16	16	33	4
GTTGTTGCTCACGCAA	alt_2716_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCAGTATTCTCG	alt_2716_missing	44	69	62	39	71	29	67	36	82	45
TGTCTTTGCTTGACGA	alt_2716_missing	3	5	2	3	3	3	5	3	6	0
GTCATACACGCACAGA	alt_2716_missing	25	39	23	28	56	35	43	26	62	23
TAAGGGTGAGCAAAAT	alt_2716_missing	11	12	9	12	20	21	33	15	21	11
TCGAGTCTTGGGATTT	alt_2716_missing	23	55	35	25	73	27	81	22	71	16
ACATGGGGCGCATCGT	alt_2716_missing	0	0	0	0	0	0	0	0	0	0
ACCGGAGTTTAATTGG	alt_2716_missing	5	10	6	4	9	4	13	5	8	5
GCGTGCAACGTATATT	alt_2716_missing	14	40	17	23	46	9	43	15	40	15
ATGGTCACCAGCCTTA	alt_2716_missing	12	21	10	11	25	8	30	9	33	11
CGCTAGTTGAGCTCTA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTGCGAGCGATA	alt_3331_upstream	45	17	65	59	24	59	18	42	27	33
ATGCGCTACGCTTCAA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTCTTATCGCAGT	alt_3331_upstream	69	46	76	77	19	62	27	69	23	62
CAGCTAAGTTTTTTCG	alt_3331_upstream	69	31	47	59	42	50	39	58	42	46
GTGTCGAGGTATTTGT	alt_3331_upstream	21	9	21	19	11	16	8	11	7	15
TAGGTTCCGGGCTTGC	alt_3331_upstream	129	54	141	162	69	114	75	120	53	97
AGAAATTTTGCTTTTA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAGGCCTTTACCG	alt_3331_upstream	118	59	135	128	61	135	48	136	59	91
TATCATCGGACTGCTT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGGGAATACCAAT	alt_3331_upstream	192	90	296	235	84	229	102	217	93	191
AAGGTGCCTGTTCCGA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
ACATTGGCCAGGGTTA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TCGATCGGAGAGGTCA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TATCTTCCTTTTTTAG	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
CGAAGGATTACAGCCT	alt_3331_upstream	11	2	24	16	8	10	6	16	3	11
CGGATATACATTTGTT	alt_3331_upstream	260	114	335	281	109	241	134	237	122	219
GTTCTCCCGTGGAATC	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTACCATCTCTAA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTGCCTTTATCTTCTA	alt_3331_upstream	47	16	65	55	19	58	19	46	20	45
ATTTGGCCAAGCGCAT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTAGTGCATCGT	alt_3331_upstream	12	5	11	11	3	7	3	15	3	10
GATCTATTCGTGCGTC	alt_3331_upstream	68	26	92	80	36	92	26	79	43	62
AACGGCATGCACTAGC	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
GAACAGTCTCCATATC	alt_3331_upstream	317	178	395	351	193	338	174	322	173	305
CCAATAGTGACGTTTT	alt_3331_upstream	27	16	23	28	16	14	19	24	10	17
TGAGGCGCTCCCGCTG	alt_3331_upstream	33	18	33	34	20	33	11	29	13	36
GGGGCTCACCGGTTCA	alt_3331_upstream	25	13	24	28	10	25	22	14	19	17
TCTTGCAGGAGAGTTT	alt_3331_upstream	116	52	150	110	51	125	52	102	43	119
TAGCTAAAGCCCAAAC	alt_3331_upstream	18	5	23	16	12	8	4	18	8	17
TTTAAGGTGCTTGTAT	alt_3331_upstream	32	22	30	22	18	29	8	34	14	41
CATCTTGTCAGCAATG	alt_3331_upstream	22	11	31	28	6	39	13	34	12	29
CTTTTCAATGGAAGCG	alt_3331_upstream	75	25	104	85	34	81	33	85	40	60
TTTGTTCCATCGATGC	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
CTTATTTCTCCGTGTC	alt_3331_upstream	27	9	28	31	14	27	20	38	8	21
GTAGGCACGATACTGA	alt_3331_upstream	29	7	20	30	4	21	22	26	16	21
CGATACGGGCTCACAT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGCAATAGGCAAA	alt_3331_upstream	22	10	31	23	14	26	5	22	13	23
CCAGTCATGATTTAGT	alt_3331_upstream	19	7	15	13	4	13	6	19	7	14
AAAATACACAGAGTCG	alt_3331_upstream	265	141	346	265	137	273	174	240	127	234
TTAGGCACTTGACTCT	alt_3331_upstream	36	9	43	28	17	28	18	28	14	21
TTATACTCTAGAACAG	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCAAGTCATCCC	alt_3331_upstream	259	95	308	305	102	274	95	257	124	228
AGTTTTCGTTTGCTGA	alt_3331_upstream	89	36	80	70	27	60	27	80	30	63
ATCACCACGGGTCTTC	alt_3331_upstream	200	87	299	250	102	217	91	232	95	199
CTGATACAGGCTGGGC	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
CTGTACTCACCAGTTA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
CTACTGAGATCTCTTG	alt_3331_upstream	553	240	677	639	222	545	257	528	244	465
AAATTCCGCAACGTTC	alt_3331_upstream	832	336	1104	935	361	816	336	792	308	745
TGCCGTCGTTTTTTGC	alt_3331_upstream	40	3	50	40	11	30	10	29	14	33
CACATGATTGCACGGG	alt_3331_upstream	64	32	87	92	57	63	54	59	43	65
AGCACCGGTGGGAACG	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAGTGTGGGACAG	alt_3331_upstream	31	17	42	48	12	31	12	42	19	22
CGCCTCTTAACCGTCA	alt_3331_upstream	33	20	36	40	23	27	22	32	19	24
GCTAATGGTTAATACC	alt_3331_upstream	12	4	12	7	4	10	1	10	1	6
AGGTTTGATAACAGTC	alt_3331_upstream	541	285	656	542	275	541	271	514	307	480
CGCCATAGTGTTCCAG	alt_3331_upstream	74	24	83	76	35	66	15	65	40	59
CACGTATTGTTGCGGT	alt_3331_upstream	50	25	59	62	33	52	25	56	33	36
TCCTTTTCTGAGCGTC	alt_3331_upstream	343	165	377	352	174	334	177	264	147	336
GGTCACCTCTTAGTGT	alt_3331_upstream	132	68	170	127	71	129	64	119	55	119
TCACCTTGTTTTTACA	alt_3331_upstream	7	2	2	5	3	5	2	9	3	3
CGCCAACTCTACGGAC	alt_3331_upstream	32	19	27	30	18	24	31	27	30	17
CGTTACTCTTGTAACT	alt_3331_upstream	8	2	2	10	2	0	1	3	0	4
TGTACGAACCACATAT	alt_3331_upstream	0	0	1	2	0	1	0	0	0	1
ACGCTCGCTGATGGCA	alt_3331_upstream	57	21	80	60	36	55	34	56	35	58
GTTGCATTCTTCGGCT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTATGCTCTTTTATAT	alt_3331_upstream	222	88	246	228	105	203	101	180	85	195
GGTTATCCTGTTGTTT	alt_3331_upstream	54	13	80	51	15	45	21	40	19	38
AGTTTTGCTTTTGTCC	alt_3331_upstream	386	123	451	407	143	346	160	347	149	339
GTGTCCAATTGGTGAA	alt_3331_upstream	17	15	24	14	15	29	8	19	10	12
CGGATTCGTGGCTACA	alt_3331_upstream	40	18	47	41	13	30	11	46	14	37
ATCGGTGGGTCAGAGG	alt_3331_upstream	52	17	61	55	30	74	24	50	27	46
TGTCATCTAATGTCGT	alt_3331_upstream	80	32	118	84	52	76	50	74	50	78
AGCTATTTTGACATTT	alt_3331_upstream	33	16	56	47	14	50	25	44	12	32
AGATCACGGATCGTTA	alt_3331_upstream	56	24	71	72	22	74	36	69	31	64
GCTCCCACGACTCCTT	alt_3331_upstream	201	76	246	213	98	194	78	191	103	199
GGATTAAGTTAACTTG	alt_3331_upstream	104	30	116	98	38	72	42	61	61	88
GGGGATCCATTGACAT	alt_3331_upstream	183	65	284	187	93	223	100	195	85	173
GCTTACCCTCCTTGGT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
GGTATAACATACAGAT	alt_3331_upstream	58	17	57	58	20	47	15	58	29	43
AACACCGGTAATAATG	alt_3331_upstream	39	21	42	38	11	43	16	25	21	37
TTAACTGACTTCTCTC	alt_3331_upstream	155	85	184	168	75	153	76	135	73	126
GTCTCCGTGGAAAGTT	alt_3331_upstream	111	53	142	129	50	134	56	105	49	107
AGTGCTCTTCGAACAT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGTATCTTAGATC	alt_3331_upstream	6	29	5	6	17	4	20	4	23	1
ACGATTATGTCATGTC	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTTATTCAAAATT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TGGATGATAGAGGCCC	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCCATAGTTTACA	alt_3331_upstream	202	150	320	290	174	229	179	266	130	214
CTCTGAGCAGGGTTAA	alt_3331_upstream	105	44	134	117	32	116	71	96	59	93
CTCTTACACCCATATA	alt_3331_upstream	346	139	476	421	173	401	177	391	157	329
AAGATCTGTTACAATT	alt_3331_upstream	117	45	142	152	41	114	38	97	31	109
ATCCTGTTGAGTGACT	alt_3331_upstream	2	0	4	0	3	7	1	3	2	2
TAGACCACTACGCTTC	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCACTTTTTTACT	alt_3331_upstream	16	2	17	12	1	10	8	11	4	15
GGTCAGTGCCGCGGGT	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
AGCAATCTTGGTCCTG	alt_3331_upstream	28	10	36	38	5	21	11	30	15	22
TACTGGTCGTCAGCCA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
GATACTCTGCACCTTG	alt_3331_upstream	114	59	170	141	59	138	55	125	51	117
TGGGTGTACGAAGTCC	alt_3331_upstream	33	13	37	27	13	30	13	26	10	25
ACGGCATGTAATGATA	alt_3331_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCATCTGGACTAT	alt_3331_upstream	42	8	48	39	19	25	12	44	14	32
ATTCCTCTATTATGGG	alt_3331_upstream	61	31	71	58	22	62	27	43	26	55
CGGCTATCGATGTTAA	alt_3331_upstream	134	59	162	142	70	173	76	115	59	154
TCCTCGTGAATACAGT	alt_3331_upstream	68	41	66	40	22	51	46	39	37	43
CGGTCAATTTCACGAG	alt_3331_upstream	55	21	60	65	23	54	17	46	22	52
AGCAAATTAGTGGCCA	ref_5322_reverse	81	144	103	71	142	85	143	80	123	61
GGCTTATTTATTATAT	ref_5322_reverse	0	6	12	5	6	11	8	5	5	4
TGTGATATACCATTCG	ref_5322_reverse	10	17	13	8	13	5	22	9	17	10
ACGTTTCCTCACTATT	ref_5322_reverse	21	33	27	21	32	19	32	13	36	14
CTGGCAAGCATTACCC	ref_5322_reverse	17	49	16	21	42	14	34	24	37	22
GGGCGCAGGCACCATC	ref_5322_reverse	16	21	23	11	26	17	23	9	24	13
CGGAGAGGTACGCTAC	ref_5322_reverse	7	10	7	15	13	7	9	9	15	10
GGTGATTCCTTACGCC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTGTTCTATACCA	ref_5322_reverse	40	105	66	46	121	48	118	41	108	40
TGGTCGACCCGGAACT	ref_5322_reverse	5	3	1	3	6	1	1	4	6	4
CCGATATGCTATCACG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTTCAAAAGTATG	ref_5322_reverse	65	91	65	61	83	59	100	57	105	61
GTAGGTTTTGGTAACG	ref_5322_reverse	39	57	47	26	51	43	69	39	52	21
GCACCGGGCGGCACAT	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGTGAACTGCTTT	ref_5322_reverse	11	21	13	13	23	9	21	7	20	18
TCACAGTTTGATCGTT	ref_5322_reverse	40	43	31	26	57	30	68	20	67	44
TTCACGGTTGGTTGGC	ref_5322_reverse	112	171	136	119	182	93	173	84	171	86
GTTGTTGGTCCGCAAG	ref_5322_reverse	31	69	63	51	87	30	63	40	68	38
CGAAAGGACTTAAAAT	ref_5322_reverse	50	116	51	57	113	53	106	53	109	70
TTCGGACGCCTCGTTG	ref_5322_reverse	11	25	23	11	33	10	23	18	26	10
AAGTTTTGTTTTCGAA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGTAATACTTTGT	ref_5322_reverse	11	16	11	5	16	7	24	9	24	11
GCCGCCTTACGGTTTG	ref_5322_reverse	5	17	2	3	16	3	19	2	19	3
ACTGGGAAACGTGCTC	ref_5322_reverse	23	22	30	16	24	27	35	19	35	18
CCGACCGATGCAATAG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CATAGTCCACCTGGAG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCCATAGTCTGTC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGCCATCTCATAT	ref_5322_reverse	9	30	17	10	18	10	26	13	30	16
CGGATTCCGTCGAGCG	ref_5322_reverse	31	49	20	39	37	28	47	25	29	22
CAATGAAGTTGGATAT	ref_5322_reverse	16	12	14	8	5	9	12	7	15	4
AGCTCGTTAGGCTGGT	ref_5322_reverse	31	49	18	23	39	17	40	21	60	29
ACCCGGTTATGAAAGA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CATCGCAGGCGAGCGC	ref_5322_reverse	30	46	26	46	40	32	46	34	53	35
CATGACGTCAGGCTAT	ref_5322_reverse	3	4	2	1	3	3	6	2	4	1
CGTGGGCTTACTTGTC	ref_5322_reverse	94	146	100	91	169	66	151	88	159	70
CACTGTGCGCTCTAAA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCGCGCATATTTG	ref_5322_reverse	9	15	8	3	5	6	8	2	16	7
CAAGCCCATAACACCC	ref_5322_reverse	4	8	6	8	7	2	4	4	3	6
TGCCCTCTGCCTGCCT	ref_5322_reverse	2	9	9	5	12	3	15	6	13	3
TCCGTACGTCAAGGGG	ref_5322_reverse	4	4	5	4	10	3	4	0	5	3
TGTGTAGGGTGAAGCA	ref_5322_reverse	43	65	41	32	61	36	63	36	59	31
CCCGACCTAACTACAG	ref_5322_reverse	9	53	22	18	53	14	53	12	71	21
CTCCGTTGTCCGGGAA	ref_5322_reverse	4	22	7	5	12	11	17	8	20	3
CCACGAGGACTAACGT	ref_5322_reverse	25	73	50	50	56	38	61	41	69	44
TTCAGGCCGTCGTTTC	ref_5322_reverse	27	73	34	32	73	29	95	30	71	22
GAACCCGGACTGGCTC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCTGACCCCCTAA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TAAGACTGGCATAATC	ref_5322_reverse	5	6	7	0	3	3	7	5	4	7
CGCGACCAGAAGTTCG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCTCCTCTTTGTC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGTGCACCATTTG	ref_5322_reverse	8	21	11	3	12	5	16	4	26	7
ACCCCAATAGATACCG	ref_5322_reverse	16	28	25	20	37	22	22	18	39	13
ATAATATTGGTCTATA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACTTAGACCTATTTAA	ref_5322_reverse	6	7	9	7	10	11	10	10	9	9
GTTCATGCATCTTACT	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTCACCTTGCTA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACAATATTTCTAGAAC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CCATTAACACCTACTG	ref_5322_reverse	29	59	47	22	41	28	56	18	54	23
CATGAGCTCTTCTACC	ref_5322_reverse	22	44	33	31	52	17	46	27	45	24
CCAGCATCCGCTCAGT	ref_5322_reverse	14	22	21	18	27	16	29	18	35	21
TCGCGTTTTTGCGGTG	ref_5322_reverse	4	16	15	11	18	9	17	15	13	15
AAGGACTCCTAAATCT	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTAAACATGTTCCATC	ref_5322_reverse	54	85	46	37	71	51	63	51	63	39
CTGGGGACCTATTCTA	ref_5322_reverse	16	28	17	25	32	11	33	5	45	8
GTCCGCAAAGGAATTT	ref_5322_reverse	28	55	26	27	48	26	44	17	49	16
TACATACATCACCTTG	ref_5322_reverse	5	18	7	3	16	7	12	5	14	6
AGGACCAATTTGCATT	ref_5322_reverse	80	118	90	75	119	66	121	65	160	64
CCCAGCGTTGTTGCCT	ref_5322_reverse	6	7	1	5	10	4	6	5	17	3
ATCACACTCGCTATCC	ref_5322_reverse	23	50	24	35	76	19	67	27	83	26
TCTTGGCTACTCTCGA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ATATCCTTATGTTCAT	ref_5322_reverse	2	1	5	4	3	2	3	1	6	1
TCCTGTAGTATGATGG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
AAAATCGAGCCTAAGG	ref_5322_reverse	19	25	18	8	23	14	33	25	21	20
TTGACTCTCCGACTTA	ref_5322_reverse	41	76	39	30	77	33	81	38	75	29
TACCCTGCGGTCCCCG	ref_5322_reverse	11	39	15	17	35	17	39	20	45	16
GAGATGTTGGTTAGAA	ref_5322_reverse	89	145	80	86	141	73	148	79	146	60
ACTTGCTCCCCCATGG	ref_5322_reverse	12	20	8	2	12	3	15	6	17	5
TTATTTCTTTATTAGT	ref_5322_reverse	11	9	8	1	18	14	17	4	13	11
CAACCGATTAAGCTCG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGGACGTCTCACA	ref_5322_reverse	22	40	39	21	42	28	48	19	41	29
TTGTATGGGTTGTCCC	ref_5322_reverse	21	55	23	31	56	27	48	25	44	26
AGCTTCCTCGGACATG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGTACGGGCATCGTCA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTTCAGTTCACTT	ref_5322_reverse	36	80	47	50	90	56	87	58	112	62
CTTTGTCCCGCGGCGT	ref_5322_reverse	17	16	12	10	23	10	19	5	23	8
GTAAATGAAGAGCGCT	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTATCGCGCCTAT	ref_5322_reverse	3	6	2	5	3	5	6	4	5	3
TATGTCCGGTGAGCGA	ref_5322_reverse	33	66	32	27	35	31	41	17	66	20
CTGATCTTAGACTCCT	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CCCATTATGTCGCATA	ref_5322_reverse	21	37	25	33	21	18	37	22	40	21
CTTTCCGAACTAATAA	ref_5322_reverse	31	68	48	48	68	35	72	44	81	39
GCCACTTGTTTTTGCC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTGCCCAAACAC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
AAAGGTGGACAAGTTG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GGCGATAACGACATGC	ref_5322_reverse	8	11	9	9	8	12	15	8	17	5
TGCATGGTTGTTCCGT	ref_5322_reverse	28	43	26	32	39	32	41	25	60	21
TGATACTCACCATTGT	ref_5322_reverse	5	31	4	2	31	0	27	2	35	1
GCATAGTAATTTCCTT	ref_5322_reverse	125	161	124	98	143	101	170	90	191	102
TAACATCGGTTCATCT	ref_5322_reverse	7	11	9	12	10	4	14	1	7	4
CGGTTGTTTCCTTCCC	ref_5322_reverse	27	40	34	32	28	16	43	17	26	27
GACCCCGAAGAGGGAG	ref_5322_reverse	2	4	2	4	8	3	6	1	1	3
CTTGACCCACTATAGA	ref_5322_reverse	24	39	27	25	44	23	50	25	49	11
AGTATAGGTGGCGCCA	ref_5322_reverse	105	129	147	125	149	119	143	99	152	105
AGGCCTTAGCTCTTCC	ref_5322_reverse	13	35	21	21	30	24	39	18	39	23
GTGAGGTGCGAGCGGT	ref_5322_reverse	88	139	114	90	136	100	137	75	164	91
TAAAGGAATAGCCCAA	ref_5322_reverse	8	11	10	13	18	16	24	8	24	11
GATTCCCCATTCCGTG	ref_5322_reverse	6	19	9	10	3	4	10	6	19	6
TCCGAACTCTTTGACC	ref_5322_reverse	1	7	5	3	9	2	9	4	6	4
GAGACTGGGTGATGCT	ref_5322_reverse	32	40	23	29	65	38	46	23	48	27
AGATTTTCTAGCTCCA	ref_5322_reverse	12	21	15	11	13	11	24	10	19	8
ACTCTTAGTTTCGGTC	ref_5322_reverse	145	185	149	132	181	120	177	116	174	94
CAGGTCACGGCGGGGA	ref_5322_reverse	17	41	25	29	47	25	25	18	36	21
ACGCAGTCTCATAATG	ref_5322_reverse	29	44	33	20	35	24	45	26	42	17
ATTGTGAATGAAGCCG	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGTAGCAAACTAT	ref_5322_reverse	3	2	6	4	3	3	4	2	2	4
ATGATACCAGTGATGG	ref_5322_reverse	1	4	1	5	1	1	1	0	3	1
GTCAGAGACCTCTTAG	ref_5322_reverse	8	24	13	9	17	13	19	5	21	12
GTTAAGCGTTTATTAC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGGAATTGCTCCA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGCCAGAGACTTC	ref_5322_reverse	23	31	22	21	42	13	37	19	50	18
GGTGGGTCATCATGCG	ref_5322_reverse	19	29	39	33	48	24	25	29	34	18
TGAGAGACTCAGCTCC	ref_5322_reverse	21	24	23	12	19	16	15	21	37	15
CTCGCTCCTCTTTGAC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CACGTTAATGCGTCCC	ref_5322_reverse	8	8	4	11	14	6	14	4	10	2
TAGAAGCCACCCATTC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGCGTTGTCAGAA	ref_5322_reverse	3	18	10	15	15	15	14	10	19	12
GAGATTCGATCTTTGT	ref_5322_reverse	1	2	4	5	6	1	2	0	3	2
ATTACGCATTGGAAGC	ref_5322_reverse	24	34	29	34	52	26	31	33	45	25
GACGCACGTAATCGGT	ref_5322_reverse	113	128	101	72	133	75	138	75	176	79
GCTAACAAAGACCCAA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCCAATGGCGGGA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TCATGTGTGGATTAGA	ref_5322_reverse	30	74	54	26	63	33	64	22	39	27
ACTGAGAAAGCATTAA	ref_5322_reverse	21	29	39	25	43	32	41	15	33	25
GGGAAGATTTATCGGT	ref_5322_reverse	9	7	4	6	7	5	11	4	10	3
AAGGGGTATTATTATC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CGACCCCGTAGTGTGA	ref_5322_reverse	13	22	16	17	22	12	18	10	23	14
CAAATATTTTTCGTGT	ref_5322_reverse	67	52	35	42	73	34	59	30	84	33
GTCTAACAGCGTAAGA	ref_5322_reverse	12	37	23	33	43	20	41	26	41	21
TTGCGAATTTCCCCTC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGTCCTCACGGTTAAC	ref_5322_reverse	8	20	3	7	13	12	21	12	19	6
ACAAGCATCCGTACAA	ref_5322_reverse	66	131	79	65	95	70	107	56	110	74
TTGATTCCTGACTAGC	ref_5322_reverse	51	79	53	45	87	53	84	40	81	42
TGTGTCAATGATGCAC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCGGGCGCTGTGA	ref_5322_reverse	8	17	5	1	24	4	27	3	30	1
GTTATAATCGACTGCC	ref_5322_reverse	28	36	29	38	54	28	48	29	54	32
TTGAAATTTGGGTATA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTGACTAACATAT	ref_5322_reverse	84	102	81	81	128	86	114	65	116	72
ACACTCGCGAGAGAGG	ref_5322_reverse	0	1	3	0	0	1	1	1	0	2
AAGTGGTGCTGTATGG	ref_5322_reverse	10	31	9	8	29	14	24	9	22	14
TCGTTAGCCTCGAATG	ref_5322_reverse	4	11	5	6	13	2	7	7	9	2
TGTGAATAGGCCGTAA	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
GACGGAGTGCATTTTT	ref_5322_reverse	20	37	26	24	49	23	48	12	42	24
TAGCTACAAGAATATG	ref_5322_reverse	43	85	47	47	80	55	77	59	65	38
TAAGACCACCTATCTC	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
CCTACTGGTTTTAAAG	ref_5322_reverse	21	40	25	22	44	25	51	30	52	21
GACTCCCTTTGCGGAG	ref_5322_reverse	10	10	13	5	13	5	13	9	14	7
CGCGTCATTGATACGT	ref_5322_reverse	0	0	0	0	0	0	0	0	0	0
TGATTTCGTGTGGTGG	ref_5322_reverse	3	9	5	1	5	1	10	4	4	3
ACACATTTTAAGCTTG	alt_3643_reverse	29	49	40	37	44	28	58	14	55	24
AGAACAGTAGACATCT	alt_3643_reverse	2	4	4	1	3	1	5	0	1	2
CCCGATCGGTCACTGG	alt_3643_reverse	7	17	15	9	18	13	16	4	22	9
CTTGAGGGGCAAGTAC	alt_3643_reverse	43	98	44	25	70	39	107	34	119	28
CCATGAACCTGGATCC	alt_3643_reverse	9	39	14	9	43	13	36	13	35	12
CAATTCCTAGAGTGTT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TAGTAGTTCCACGTAC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGTTTGCACTTTT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTTGAGCACGGTC	alt_3643_reverse	8	18	12	13	19	15	15	3	27	9
CTGACTAGCCTCGGCA	alt_3643_reverse	11	32	13	14	48	23	52	13	48	14
ACAGGGGGCCGGACAC	alt_3643_reverse	0	1	3	0	0	1	6	0	4	2
ATCCGCATCCACCCAG	alt_3643_reverse	7	16	12	19	24	10	24	14	35	13
TAGTGTTGCAACAGAT	alt_3643_reverse	7	21	8	8	17	14	30	7	25	6
GGGCCATGCGCATTTC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTTCTTGGGCTAA	alt_3643_reverse	2	5	4	3	8	4	5	1	11	1
GGATCCCCTAGGGTTC	alt_3643_reverse	8	17	7	8	13	2	14	7	5	5
ATGTTCGGCCACAGTG	alt_3643_reverse	3	4	2	5	13	4	14	0	7	4
GGGTTTGTTGTTGTAC	alt_3643_reverse	44	65	43	19	66	34	63	20	96	22
TGTGCGTTCCATTCGT	alt_3643_reverse	52	116	54	54	129	51	133	48	141	38
TTTGTCACAGCTGACG	alt_3643_reverse	17	37	15	18	32	14	39	11	41	19
CTATCTTCTTGTGCCT	alt_3643_reverse	1	5	1	0	4	2	1	3	10	2
GTGATTAATCAAGACA	alt_3643_reverse	24	47	24	23	46	18	38	15	51	12
TCCTGTATCACACCGC	alt_3643_reverse	32	73	39	32	81	33	66	24	78	38
ATGAGGGAAGTTTTAC	alt_3643_reverse	21	14	26	10	18	12	12	17	23	9
AATTACGTAAAGCTAT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGAGGGTTGGCCA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TGTACATAGACTTTCT	alt_3643_reverse	21	79	41	26	80	35	69	36	66	17
GGGGCCAGTTTTTCCG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GGGAAATAGTCCCTGT	alt_3643_reverse	17	27	19	16	25	20	30	13	33	23
TCGGTGGTACGATTTC	alt_3643_reverse	12	18	13	6	27	8	18	6	19	17
AATTAACCTCCGTGCG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
CCTATCTGAGCCGGCG	alt_3643_reverse	14	30	25	9	30	15	42	20	38	16
TACTCCTCTGCCTACT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GAAACATACCCTGTAC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
CGATTGTCTTACAACT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTATGACCTGGGTTCA	alt_3643_reverse	22	27	30	18	31	25	44	14	40	27
GTGTTAACTGTTTCTT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
AGATGTAAAGGTATGT	alt_3643_reverse	9	19	13	15	16	5	19	6	26	6
TTCAGGACAAGGTCTA	alt_3643_reverse	6	30	18	15	23	11	22	14	36	12
AGCATTCTTGGGCTAA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GTAATAGACACTGTGA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGCACTTTCAGCG	alt_3643_reverse	3	1	0	2	7	1	4	0	3	3
GCTGCGGATGCCATGA	alt_3643_reverse	15	40	30	19	43	19	29	18	45	18
GGGCCTGCGCATATCA	alt_3643_reverse	13	22	10	7	21	17	25	12	34	6
GCGTGTGTAGGTTATA	alt_3643_reverse	17	50	25	28	55	28	45	14	59	24
TGCACTATATGCACTA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GGAGACTACAAGGGCA	alt_3643_reverse	7	7	10	1	15	2	14	11	11	1
CGCCTCGAGTTATGAT	alt_3643_reverse	21	35	27	15	32	20	46	14	31	15
TTCTCAAGTTCGGGGG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTCATACAGGTATTCC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GGGATCACGACGCTCT	alt_3643_reverse	6	19	3	7	10	3	10	6	12	5
TCACCGAGGGAACGTG	alt_3643_reverse	4	18	10	6	17	10	17	4	14	4
CGTGGATTCTCTGTCC	alt_3643_reverse	4	13	8	4	13	4	9	3	13	3
CGTTCCACTGCGTAAA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTAATCTTTGCTT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GATATCCCGTCCACCG	alt_3643_reverse	0	3	0	1	2	0	2	3	3	0
GCCATGCGCCTTTCCA	alt_3643_reverse	7	20	3	1	15	4	7	1	7	13
AGCAGTATCATCATAG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GATATGCATCGGCCTA	alt_3643_reverse	9	21	7	4	23	19	14	10	11	6
GCATTGGCCTGTGAAG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TCTATTCCTAGCAAGT	alt_3643_reverse	12	17	15	13	24	11	23	10	16	14
AAACTAACCCATGTAT	alt_3643_reverse	7	9	9	5	10	8	20	13	16	5
ACTTGTGCCCTAGTTT	alt_3643_reverse	1	1	0	1	3	1	6	0	1	0
CTGTTCGGAGATTATG	alt_3643_reverse	3	16	7	5	18	8	10	12	16	4
ACGTAATCCCAGCTGC	alt_3643_reverse	14	20	17	9	13	13	23	10	20	9
TGCTAGGTACCCTTAC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GGGAGTAGAGCCGCTA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTTCCGCGAGTCC	alt_3643_reverse	29	36	23	10	48	16	69	15	48	25
ACTTGCACGCTTTCTA	alt_3643_reverse	19	23	16	10	25	12	54	8	20	14
TGAGAGGAGTGATGCA	alt_3643_reverse	59	86	46	59	88	47	121	35	98	29
CCGACTTAGGATGTCC	alt_3643_reverse	6	8	5	3	13	4	10	4	8	13
ACCCGGGAGGCTTTAC	alt_3643_reverse	6	4	3	3	7	2	5	3	6	2
AACCAGGCTTTCTTCT	alt_3643_reverse	25	47	18	16	55	23	31	18	46	23
TCATTTGTGACGTCCG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGTATTCGCCCAT	alt_3643_reverse	4	3	0	0	2	1	5	2	1	3
TTACAGGAGGTTCACT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCTAGGCCGGGGC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GATAAGAAGAACACCT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCTGATTCAATAT	alt_3643_reverse	5	16	6	6	13	10	18	8	21	11
TCTTACAAGCGCACTT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
ATCAAATTTAGCGTAA	alt_3643_reverse	6	23	5	4	16	9	27	8	20	11
GACTAAGCAGGTTGTA	alt_3643_reverse	19	34	12	17	25	14	42	21	36	6
TAAAGATTAGAGGGGA	alt_3643_reverse	17	36	27	10	29	25	36	16	48	16
GATTTCTAAAAGTATC	alt_3643_reverse	21	68	40	26	66	30	67	23	63	29
TCCTGACCACTTGTGG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTCTTCCGCCCCG	alt_3643_reverse	19	41	37	20	37	24	44	28	38	33
TGTATATTCGCACCTC	alt_3643_reverse	49	111	46	42	114	47	110	50	104	35
AAATCCTCAGGGAAAA	alt_3643_reverse	5	8	6	12	10	10	12	6	13	4
TCCATCTCGCACTATT	alt_3643_reverse	19	46	24	21	48	23	54	11	43	23
GCATCAAGATAGTTCA	alt_3643_reverse	2	6	7	5	10	4	19	3	6	0
ACTCTTCTCAGGTTAA	alt_3643_reverse	16	25	19	10	29	19	29	19	27	14
TGTACCGGGCAGTTCA	alt_3643_reverse	55	148	85	60	158	53	127	53	179	66
GGCAAGTGCGATTATT	alt_3643_reverse	3	2	1	2	9	3	4	1	7	1
GTCCTTTTGCACGTTA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCTTGGGCGAGCA	alt_3643_reverse	25	78	21	30	49	21	66	20	78	26
CATGCATTGTGCGCTC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTGTGGTTACTGA	alt_3643_reverse	4	15	6	3	12	4	11	5	11	5
TCGTCAAATTTTATAT	alt_3643_reverse	10	29	30	16	39	13	42	10	38	15
GTTTAGAGTACTAGCC	alt_3643_reverse	18	61	21	19	41	18	53	26	48	28
GGGTATTGTATCTTAG	alt_3643_reverse	11	16	6	13	20	10	18	6	17	5
TATTTGGCTATTCGAT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GATGTATCTAGTTCCC	alt_3643_reverse	13	25	14	15	25	7	37	8	19	16
TCGATTCGCGCGGAGT	alt_3643_reverse	11	13	15	14	25	10	15	12	27	8
CAATGCGATATTTATA	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGTTAACGTAGA	alt_3643_reverse	5	6	10	3	16	5	7	4	7	3
AAGCGTACCAGTCCTC	alt_3643_reverse	4	6	4	1	6	1	5	2	5	3
TACACGTTTTGCATGG	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GGTTATTTGGTAACAT	alt_3643_reverse	2	2	2	0	3	0	3	1	1	2
AGCTGTACACTTTGGG	alt_3643_reverse	14	40	27	14	27	16	44	11	31	13
TTTCTGGGGGGGTGTA	alt_3643_reverse	64	127	78	68	120	64	121	76	148	74
ATCGCCGTCATGTGTT	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
GATCGCCAGCCTGTGA	alt_3643_reverse	49	104	58	50	129	49	97	48	112	45
ATTTCGTTTCAGTTCT	alt_3643_reverse	1	15	6	1	13	8	5	4	12	2
GTTCCTGATTTCAGTT	alt_3643_reverse	20	41	29	20	57	15	46	24	43	24
GTCCGCAACGTAGAGG	alt_3643_reverse	1	9	4	6	12	2	13	5	22	7
TATTAGACAATATTAT	alt_3643_reverse	11	8	11	7	17	8	17	12	13	3
ACGGTAACTTACGAAG	alt_3643_reverse	12	37	17	13	35	23	39	15	30	14
TAAAGCCTATTGTTGG	alt_3643_reverse	4	9	5	8	13	5	18	1	6	1
CAATGTGGAAGTAATT	alt_3643_reverse	5	16	10	8	20	6	18	6	18	15
AAATGGCCGTTATTGC	alt_3643_reverse	0	0	0	0	0	0	0	0	0	0
TGATTTATTACCAAAA	alt_3643_reverse	30	59	34	26	62	24	54	35	64	19
GGTAGTTGAATGTACC	alt_3643_reverse	7	18	8	4	22	10	22	4	12	5
TTGCTCGTTTCCAGAC	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCAGTTTTCCATG	alt_2534_upstream	7	4	15	14	5	13	10	9	8	11
ATCCGGTGGTTTCCAT	alt_2534_upstream	135	115	156	124	128	118	124	121	126	114
TGTTGTGTGCCAATGA	alt_2534_upstream	48	68	54	45	38	56	42	38	57	45
CCCCGATGATGAACAG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTTGCTAATCTTC	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
CCCAAGATTGTTTTTT	alt_2534_upstream	24	19	16	13	19	22	15	13	16	20
GTCCAATGTAAGGCCT	alt_2534_upstream	32	33	50	33	37	33	28	37	25	26
GTCGGGTTGCCATTAC	alt_2534_upstream	13	17	13	13	10	14	10	13	18	7
TTTGTCATTCGCCTCC	alt_2534_upstream	16	12	13	15	22	16	14	11	20	8
AGATGAGTCGCGCCAC	alt_2534_upstream	37	27	39	42	38	26	26	30	27	30
CGCTCTAGAACAGTTG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGTACGCTTACATGGC	alt_2534_upstream	47	41	66	58	41	42	50	57	43	31
GCCACCGAGCGACAAC	alt_2534_upstream	21	18	20	21	16	12	17	16	22	19
CCTCCTTTGCCCTCCA	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GATTGTCATCACCAAT	alt_2534_upstream	155	158	155	120	150	145	161	136	115	122
ATAACACAATGTGTGG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCCGACCAATTTC	alt_2534_upstream	48	41	46	43	51	34	56	55	55	47
GTTGGTTTATTATTTC	alt_2534_upstream	47	66	59	65	55	49	47	46	41	53
ACCGGCAGTCGGCTGC	alt_2534_upstream	26	29	34	33	26	28	26	36	35	24
CCCGATTCGTCATTTC	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCGGCTCTCGTTG	alt_2534_upstream	62	58	63	62	57	57	55	44	55	55
AGTCTGCAACTCCTCG	alt_2534_upstream	24	22	21	22	16	16	29	26	23	11
CGCCTCTAATCTCCCG	alt_2534_upstream	10	13	26	16	12	19	32	13	26	16
GCAGTGCGTGTCTAGA	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
CGTACTGCGGAGATAC	alt_2534_upstream	115	108	114	121	106	120	115	126	109	107
TACCCTAAAGCTTTTG	alt_2534_upstream	332	290	380	354	329	284	299	299	309	299
ACTAGCGGGCGGTGTT	alt_2534_upstream	43	49	57	17	43	36	30	43	42	32
TTATGACCTCAGCGGT	alt_2534_upstream	97	100	135	109	118	111	113	107	107	92
TTCGTGGCAACGAGAT	alt_2534_upstream	4	1	7	4	2	2	5	2	4	15
CTGTTGTCAAAGCTTG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTTTTGGTAGGT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGCCTACTACCTA	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTGGAATTAGAGT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCTAGCTTCCTGC	alt_2534_upstream	30	26	35	38	28	30	27	35	26	33
CCGTGAAGAATTTTTC	alt_2534_upstream	18	20	21	19	17	18	20	10	22	11
GGCAAGGGCATGTTGC	alt_2534_upstream	28	15	18	13	11	23	19	19	15	20
CTTGGCTCTCGTCGTC	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGTTCATTTTAGA	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTGGTGGCGCCAC	alt_2534_upstream	44	40	54	54	45	42	43	29	43	43
GTTCAGAATCTTTGTT	alt_2534_upstream	12	6	10	10	13	11	9	4	8	13
ATGTTCGGGGCTGATT	alt_2534_upstream	7	5	4	2	3	6	7	4	7	4
TTGCAGCCGATGTTTA	alt_2534_upstream	10	15	14	11	11	9	9	10	8	7
GTTGGTGAATAAGTTT	alt_2534_upstream	37	47	47	36	58	45	57	61	65	30
AAGTCTACCGTTGTTA	alt_2534_upstream	58	78	77	56	71	61	88	42	95	59
GCTGCATAAGGACAGA	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTTAATCCGGGCT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GTGATATCGTCATTAC	alt_2534_upstream	27	33	36	34	41	35	36	30	27	28
GACTCCACCGACATAA	alt_2534_upstream	5	7	6	4	3	16	11	6	7	9
GCACAAAAATAGAACT	alt_2534_upstream	5	7	5	8	19	9	10	8	9	4
ATTGCCCCGATTAGAG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
AGCCGCTCAGCTTAGA	alt_2534_upstream	11	27	30	23	29	13	33	21	31	21
AGATGATTTGTAGCTT	alt_2534_upstream	45	48	85	62	53	66	59	54	48	46
TTGTCTCATCTCATAG	alt_2534_upstream	117	106	117	99	102	120	126	93	126	88
GAAAAGCGCGGTCGCG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GGGTAAGCTCGCATCT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TACTATTGAACATGCA	alt_2534_upstream	27	38	41	38	39	40	39	45	62	44
GAAGTCGCGTATATCG	alt_2534_upstream	12	10	8	11	18	13	9	13	10	17
ATTTTTAACAGTTGGC	alt_2534_upstream	39	52	79	70	51	57	56	55	77	37
ATTGTTTTCGAATTCT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
ATGATAGGCTACATAC	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCACTAGGCAGA	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCGAATATACGTG	alt_2534_upstream	30	28	37	20	30	31	27	35	33	30
ATGATCGGCTACATAC	alt_2534_upstream	300	281	370	303	288	315	311	288	287	277
CTTTAAATCCTTCGTT	alt_2534_upstream	61	37	49	44	48	46	59	45	67	52
CCCAAATACAAGTCAC	alt_2534_upstream	9	8	7	7	3	4	5	8	11	8
GCGCTCCGTTCTATTT	alt_2534_upstream	0	1	0	0	0	1	2	2	1	2
ATTTACTTATACACGT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGCTATAGTATGG	alt_2534_upstream	63	108	115	107	90	79	93	90	86	90
CTGCGTTATTCTCGGA	alt_2534_upstream	97	68	99	91	78	89	86	87	91	80
GTCAATCTTAGTCGCA	alt_2534_upstream	39	37	63	39	47	56	41	51	57	47
GGTCCTCTTTACTACG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GTTATGCTCGTGATCC	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GAACATGAGGATCAGC	alt_2534_upstream	27	18	18	11	11	19	9	20	17	15
ACCGTTGGGGCCACGG	alt_2534_upstream	10	8	14	18	13	11	12	14	12	16
CATTATCCGCAACTTC	alt_2534_upstream	0	0	0	0	1	1	0	0	1	1
TTACCTTTCTCGTGTT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTCGTCTAAGATT	alt_2534_upstream	61	53	61	56	71	64	54	58	48	59
TATACCCGGCCGGCCA	alt_2534_upstream	108	135	143	115	163	105	178	107	171	95
ACTAGGCGAGGACATT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGTGTCTAGTCCT	alt_2534_upstream	54	86	69	33	66	63	70	57	73	40
CCAAATAGCCTACTTC	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
CATATCCTCGCTCGGG	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTATGATCTTCA	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTTTGTGCGTCTC	alt_2534_upstream	105	100	118	145	103	112	119	92	138	108
GCGAATCTAAAATCGT	alt_2534_upstream	0	0	0	0	0	0	0	0	0	0
TATACCAGTTCAAAAT	alt_2534_upstream	23	22	21	23	18	18	22	16	27	30
CCTCATCAATATGGTT	ref_3315_RC	36	13	46	35	14	47	15	48	11	31
TCTATGTTCTACTTTT	ref_3315_RC	342	133	372	368	131	327	122	327	138	262
GCACTTCGCTGCATAC	ref_3315_RC	14	5	16	18	4	5	14	16	3	9
ACCGAGCTCTCCCCCT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TGTGCGCCTATGTAAC	alt_3315_RC	385	142	492	409	113	325	123	262	142	307
TAAACATCGAATCAGC	ref_3315_RC	87	40	123	113	38	109	43	98	49	88
GGTAAGCTTCTGGTTT	ref_3315_RC	58	30	87	66	29	50	22	61	23	54
TACTCAAGAATCAGTT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
CGTACATGTTGCGTAC	ref_3315_RC	14	4	12	17	4	23	8	15	4	7
ATTGGAGGTATTGCAT	ref_3315_RC	276	123	397	321	121	296	123	277	125	274
ATAGTCCCATGGGGTG	ref_3315_RC	115	43	189	135	40	129	48	141	43	117
TCCCCCATGACCGGGT	ref_3315_RC	85	45	132	122	39	86	63	121	44	70
TAGGTCAGACATTGGT	ref_3315_RC	255	84	324	285	90	225	112	285	76	202
CTTAAATGATGGCCTA	ref_3315_RC	101	29	134	107	31	79	36	101	36	76
CTTCCTAGCAAATATA	ref_3315_RC	121	64	143	138	63	132	51	116	61	125
TAGCACTGCCCTTTTG	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
GTATGGCTGGGGATTC	alt_3315_RC	40	15	48	37	17	50	10	42	20	40
TTTTTACCAGTTTGGG	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
ACTATCCTCGTCACTC	alt_3315_RC	183	84	216	193	65	153	74	150	85	153
GGACGATGCAGTATAA	ref_3315_RC	10	1	14	20	5	13	3	12	5	11
TAACGTTTTTGTACCA	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TTTGAGATGTCAGCGT	ref_3315_RC	11	5	13	9	1	10	3	6	2	4
CAACAGCCCTTTGCCC	ref_3315_RC	65	34	102	96	32	69	40	87	39	62
CGGCCTTCGGGCTTAG	ref_3315_RC	319	134	393	392	133	307	124	296	124	278
CGTCTATTAGTCTCAG	ref_3315_RC	353	149	472	394	160	309	178	332	149	322
GCTGCTTGAGACATGT	ref_3315_RC	146	62	172	154	51	99	46	130	51	138
CTTAGGGGTCATCCAA	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
GCCGATTTTAAGAGTT	ref_3315_RC	62	26	83	69	12	62	27	52	31	49
CTACCACGCAAAACCG	ref_3315_RC	34	17	59	57	22	40	16	47	21	43
CCATCCACTGGGTCGG	ref_3315_RC	269	134	395	360	135	264	135	279	154	282
CGTGCCTAGCTCAATT	ref_3315_RC	102	52	122	123	43	103	37	109	48	114
CGTTCGACCTATCACG	ref_3315_RC	87	23	86	87	27	49	23	59	30	62
GGTTCGGTTTTTTATA	ref_3315_RC	66	32	105	94	36	80	37	84	34	72
AGGGTCGTCGCGTGGA	ref_3315_RC	44	4	48	36	12	28	17	28	15	33
CAGTGGTCTAACGAGA	ref_3315_RC	27	11	25	30	5	25	5	12	5	19
ACCCTTGACCCATCAC	ref_3315_RC	73	21	69	50	20	51	16	56	14	43
TTCTGTGTTGTTGGAT	ref_3315_RC	199	81	228	221	72	209	90	173	107	198
TCTTAATTTTGCCGTG	ref_3315_RC	35	21	46	46	12	42	15	45	13	44
TATATCCAGTGGACCC	ref_3315_RC	59	31	88	86	20	68	25	68	35	74
GTTCTACAATCGATTT	ref_3315_RC	634	255	786	681	275	587	266	592	276	551
TTGATCGATCATTGTC	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TACCCTAAGAGCTTAT	ref_3315_RC	112	32	121	102	28	101	50	107	41	78
TTACCGTGTGGTAAGG	ref_3315_RC	68	25	81	70	28	82	34	71	38	71
GCCAATGTTCACGCTA	ref_3315_RC	105	53	136	112	57	86	60	102	56	109
GTGCCTGTAATATGAG	ref_3315_RC	336	156	380	387	162	310	168	359	133	307
AAATCATAGTCTCTGA	ref_3315_RC	35	10	40	48	12	26	16	42	22	39
AACATGAGCAAACCTT	ref_3315_RC	32	13	41	41	13	41	17	35	8	17
GTCGCATTAGCACCGC	ref_3315_RC	47	22	59	54	24	42	22	48	24	46
CGGGCGGTCATTGACT	ref_3315_RC	75	30	107	101	32	93	38	88	34	74
TCACGGTCAGGCGGTA	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
AGTGTGCCCCTTCTCA	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TCAGTATAATCTGCTG	ref_3315_RC	84	28	104	85	24	64	23	95	26	61
ATGTTTTATTGTAGTC	ref_3315_RC	54	26	69	75	26	62	29	48	27	47
CCATCCTTGTGTAATT	ref_3315_RC	221	91	301	243	72	195	68	208	78	185
ATTGCTCAGATCGAAC	ref_3315_RC	48	34	54	56	16	46	24	53	22	33
TTAAACAGCTAGTTAC	ref_3315_RC	163	52	173	177	54	131	48	119	68	104
ATCGCACAGGCATTTG	ref_3315_RC	326	132	423	345	132	323	134	322	131	290
CCGAGGTTGCTAAATT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
ACTGGACTTGCCATGG	ref_3315_RC	59	23	75	70	28	66	29	45	27	52
GGACAAGATTTTTAGG	ref_3315_RC	53	23	73	71	22	65	17	53	23	57
TGAATTTTGCCCGTAT	ref_3315_RC	159	60	188	143	56	135	79	121	52	111
TTGTATTGTCACTTCC	ref_3315_RC	64	25	85	80	49	62	39	71	28	59
CAGGATGGAATCAAGT	ref_3315_RC	144	94	154	155	71	128	75	135	61	104
TTAAAGGTCCCATGCT	ref_3315_RC	113	35	117	88	33	94	28	101	41	83
GTATGTGTCTAGGCCC	ref_3315_RC	117	44	131	125	37	96	33	101	50	98
GGCGTTTTACGAGAAC	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
GGGTCATATCTGGAGA	ref_3315_RC	31	14	51	29	12	45	10	34	14	26
CTCCTACTCTCTTATT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TGTGGAGCGGTATCGG	ref_3315_RC	35	12	44	37	14	37	20	39	24	45
TGATTTTGAGGCTTCT	ref_3315_RC	280	110	331	295	101	262	117	238	106	233
GGGCTTAAATGGCTTC	ref_3315_RC	117	39	139	156	29	124	48	110	38	106
TCATAGGCATAAGTAT	ref_3315_RC	42	23	39	43	22	34	17	50	14	37
CCAGACAGAGACTCAC	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TGGTCTGATTGATCCA	ref_3315_RC	428	175	511	500	154	409	168	425	158	364
ACGTAGGAACGCTTTA	ref_3315_RC	197	64	266	182	79	151	72	153	72	170
CTTGTGTCCGCATATT	ref_3315_RC	276	120	352	337	138	294	125	282	101	236
AAGGTGTTTTTACGGT	alt_3315_RC	29	36	53	38	22	30	30	42	41	33
GCTGCGTATCCAAGTG	ref_3315_RC	25	10	37	31	5	28	15	29	15	24
TTATATACTATGCCTC	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
GATTCATTGGGACTTA	ref_3315_RC	87	42	99	105	27	89	33	70	48	95
TATGACTGTAAAGCGG	ref_3315_RC	142	53	138	156	50	125	46	112	43	109
CGATTCCCTCAGTTGT	ref_3315_RC	75	44	107	88	45	60	47	88	43	51
CACCTTATCCGTCAAA	ref_3315_RC	59	28	78	61	38	50	28	47	41	50
GTTTACAAGGATACCC	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTAACAATCGTC	ref_3315_RC	1	4	7	4	1	2	0	2	1	4
GCGGTTCTGAACCGGT	ref_3315_RC	154	55	184	139	42	155	64	148	70	149
AGCACGTAATTGCGTC	ref_3315_RC	26	19	48	37	10	26	18	31	21	30
TAAGTTGTTAGCTGAT	ref_3315_RC	68	33	85	74	28	62	30	72	46	62
TAGATCAATATTTAGC	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
CAATTCGTGTACATGG	alt_3315_RC	110	49	115	115	29	84	42	102	36	92
CTCCGTTCCGTGCTAA	ref_3315_RC	28	24	37	33	17	22	15	37	27	30
AGTCATTCAATACTTT	ref_3315_RC	73	31	120	101	30	102	36	82	35	66
GGGAGCTCTTCTCTGT	ref_3315_RC	128	33	134	125	47	98	41	112	38	111
TTTAAAGATCCCTGGT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
GGGTTGTATACTGGTC	ref_3315_RC	36	13	60	38	22	51	15	44	19	42
ACACTAAGTTCGGCAA	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TTATAAACAGTGGTCA	ref_3315_RC	105	56	162	141	57	130	79	153	47	97
ATATATCTGTCCGTTC	ref_3315_RC	184	107	299	246	106	196	99	224	108	204
CCTTCTGTGGCAGCCT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
CGTTGCTCAGAGAACT	ref_3315_RC	27	10	20	15	6	9	4	16	12	17
AGACTCAATGAAGTGC	ref_3315_RC	114	47	137	118	48	111	52	102	40	100
TCACGGTCAGGCAGTA	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
GGACAGCTTTTATATG	ref_3315_RC	48	23	53	57	19	32	25	62	24	41
CCAAGCATTCACCTTT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
CCTTATGTTTAATTCG	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
GCTGCATGAATGGACT	ref_3315_RC	107	34	100	96	36	92	52	86	37	94
CATTTTGTTTCATTTG	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GACGGTTATGTAGACG	ref_3315_RC	20	1	14	9	5	10	14	15	4	10
TTTGCTGCATGTCTCT	ref_3315_RC	18	4	20	24	4	8	10	14	7	14
AAAGCTTAAGTTCGCA	ref_3315_RC	212	79	247	198	98	184	96	188	86	141
TCTTAGGGGCTCTACA	ref_3315_RC	129	34	116	123	57	108	33	111	49	115
CAGGTAAAAAATTCTT	ref_3315_RC	93	29	112	114	39	93	45	88	50	76
GGGGGTCCATACTGCT	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
AGCCATTAGCAATCTG	ref_3315_RC	27	13	40	39	14	42	10	30	12	18
ACTTAGCCGACCGTAT	ref_3315_RC	65	22	94	80	23	53	35	64	29	62
GGCAACCTTCTCCGTC	ref_3315_RC	33	12	39	36	14	25	13	28	19	24
ACCTGTTGAGGTTTCG	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTGCTTTACATA	ref_3315_RC	0	0	0	0	0	0	0	0	0	0
TTAGTACTATTGAATC	ref_3315_RC	176	75	208	173	70	121	79	167	73	122
GGTATAAGGCGGTGGC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CATCCTTAGCTCAGCT	ref_5892_new	17	21	15	19	27	19	35	13	16	17
TGCCTTCACACAGTGG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GTTTTTACGGGTGGCA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CGTAAAATTCATGTAT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TATGCAATTAATGGCC	ref_5892_new	42	38	39	46	51	37	45	38	59	33
GGGCGGAATTTTTGTC	ref_5892_new	25	16	29	24	31	21	14	14	15	28
GTTAATTCCCCATTCT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CTGCGTATTCTGTGTT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TACAATTTTCCATTGA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CGCCTACCCGGCTGAT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GTGCGAAACACACATG	ref_5892_new	32	43	25	28	31	22	24	22	25	19
GGTCATTACGCTTTAG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CTATGAGGCCTACATA	ref_5892_new	7	19	15	6	10	9	13	2	8	14
ATTTCCGTAGGCGTAT	ref_5892_new	9	6	8	13	7	10	4	4	10	2
GATGTTTGGCCAAGAT	ref_5892_new	11	7	5	7	5	4	4	11	8	4
TGCACATGCTCTCCGT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
ATCAACCTCAGTGACT	ref_5892_new	18	28	16	23	20	14	22	9	21	22
GGGCGGCGTGAGCATT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GGGTTTTAAGCCGTCC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TTGATAATCCATACTT	ref_5892_new	7	5	5	7	9	6	18	7	13	2
AGGTATTGCCATTATG	ref_5892_new	35	39	60	29	31	42	40	38	47	42
GGCCTTTTATTCGTTT	ref_5892_new	10	16	17	15	28	10	22	18	8	11
CTGCTTACCCCTTTGT	ref_5892_new	23	18	17	31	17	22	12	29	27	23
CCCCAGCATTCCACGA	ref_5892_new	18	22	12	13	15	15	10	16	14	12
ATCCAGGGCGAACGCA	ref_5892_new	19	28	20	27	24	17	23	18	29	26
GCAAACCGTTGAGGTC	ref_5892_new	5	3	7	10	3	4	12	5	7	6
CTAAAGTACGCGATTC	ref_5892_new	72	63	60	56	59	41	62	58	61	53
CACGGAAGCCTGAGCC	ref_5892_new	13	29	13	26	24	13	17	15	22	18
CACCTCGAAGTTAAGC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
AATGAGAATCTTTTTC	ref_5892_new	8	4	11	7	14	14	9	7	14	3
TTTTACTCCTAACTTC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TCATACAGACCTGGTG	ref_5892_new	33	52	38	43	53	28	59	32	60	35
TAGTGTGCGTTCATAA	ref_5892_new	4	8	2	6	7	3	16	2	13	7
GCACCTGCGCCCGGTT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
ATTGGGACATTTCCCT	ref_5892_new	7	14	10	4	17	9	26	12	15	6
TCAGCGCAGCGAAGTT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GCCCCATGCGAGTTGT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
ACTGCTCTATCAGGTC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TCTGGGCGTACAACCT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GCTTCCCTGGTAAGGG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GGTACTCCGACGCGCT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GGGTGAGCAAATCCTT	ref_5892_new	1	2	4	4	5	4	0	6	1	0
AGGTACGTGGTTGAAT	ref_5892_new	20	20	16	19	21	22	22	28	27	18
AATTTATAGGAATACC	ref_5892_new	3	2	4	2	1	2	0	1	4	1
ATTGCGGGCCCCTGTT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TAACCATATATATATG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
AGCGGATGCAAAATGG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TGGTATGCTGAGGAGA	ref_5892_new	8	20	10	14	18	11	11	12	17	17
TATTTTTCGCTAAATA	ref_5892_new	23	35	47	32	35	36	40	33	47	28
CAGCCCGTGTATACCA	ref_5892_new	7	20	6	7	7	6	9	3	8	6
AATGAGAAAGATTCGT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CAATACTGCTCAAATG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CTCGACTACCGTTTGG	ref_5892_new	29	35	35	25	25	21	32	25	25	29
AAACCACCTCGTGCGC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GCCCCGGCCCAAGTCG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GTCATACGTCCTCGTC	ref_5892_new	18	39	24	21	52	18	39	25	51	16
ACGTCTAGATGATTTA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GAACTAATTGCAGATG	ref_5892_new	2	4	0	3	5	1	1	1	9	3
GTCCCTTTACATCTTG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
ATGCACGTACTCGCTG	ref_5892_new	15	11	18	10	7	17	13	21	14	24
TTGTATACGCTCACCC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TCAGGTGTATTGTGTG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TCCCATGTTCCTCCGC	ref_5892_new	19	17	18	21	26	13	21	8	15	15
GATCATGCCCAGTTGG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GCTATAAACGGGCTAG	ref_5892_new	8	14	9	13	23	8	23	10	8	13
GTCCAATTTCTTCGAA	ref_5892_new	33	46	70	49	49	47	51	47	38	41
CTTTTGTTAAATTCTA	ref_5892_new	9	6	15	13	16	5	10	12	11	8
GCATCGGTGCGTCAAC	ref_5892_new	24	35	45	29	32	32	34	24	59	27
GGGACCGTCTTCAGAT	ref_5892_new	18	17	29	19	9	13	10	20	17	11
CCTGCAAGTTTAAATA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TCTAGAACAATATGTT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TACCGGCTGCAAGGCT	ref_5892_new	27	28	23	23	29	23	36	13	25	24
GTATTCTAAGCCGTAG	ref_5892_new	9	10	13	13	4	11	11	6	12	4
CAGCTAATTATCCGCG	ref_5892_new	3	1	0	1	3	4	5	1	3	0
TGCTTCCACTGGATAT	ref_5892_new	38	42	56	41	50	55	44	34	45	29
TGTCCCTGGACTGCGA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TAGCACGTATTTGTGA	ref_5892_new	68	70	75	104	93	69	91	80	91	68
TACTTTGGTTTGAGGA	ref_5892_new	49	69	50	77	68	50	55	42	61	64
ATTGGAAAAATGATCA	ref_5892_new	33	30	27	22	42	25	31	25	35	21
CGTTTTAGTTTAGGTA	ref_5892_new	18	24	24	17	28	11	33	18	22	23
TGCAGGGGGTCCCGAG	ref_5892_new	11	13	18	9	12	11	6	7	13	8
CTGAGGTATTGTATTT	ref_5892_new	25	28	32	20	29	12	36	29	49	24
AAGGATCCGAACAGCG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GCCTTTAAAATGTATT	ref_5892_new	39	50	45	37	48	36	34	31	54	29
GCGTGTTACTGGCGGT	ref_5892_new	13	7	20	7	15	6	23	11	14	12
TTAGGAGCTTCCGGCT	ref_5892_new	8	13	14	12	21	8	13	13	17	8
CCTCTCTATTATTCTT	ref_5892_new	12	44	12	17	34	18	36	13	45	12
ATCTTACTGAGCTCTA	ref_5892_new	125	117	152	129	132	120	144	113	146	133
ACTCTGCCATGGAATA	ref_5892_new	20	26	26	31	25	30	18	20	23	22
TTTGCCATACTATCGT	ref_5892_new	14	22	11	10	11	12	14	5	15	6
TGAACTGCGGTAGCCG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CATTTTATCTAGGGAT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
ATACCCGTATCCTTAG	ref_5892_new	42	66	61	34	74	30	49	28	61	35
TTTGTCAGGCAGGCTT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TCTATGCCTTGTAACC	ref_5892_new	7	12	5	5	6	3	5	2	1	1
AACCCGGTTATCCGGA	ref_5892_new	125	96	137	144	130	126	134	126	146	102
CTGGAGCGGTCATTAA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TATGGCGGTAAGTATA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CGCATAGAGTGCCTGG	ref_5892_new	61	127	100	107	123	67	148	72	147	51
TTGTGTGTATCCCTCG	ref_5892_new	1	3	1	2	1	2	4	0	2	1
TAAAGTTGCCTCAGGA	ref_5892_new	38	35	34	38	40	30	39	32	29	22
TTGTGTACTCATTCGT	ref_5892_new	12	6	10	7	12	8	6	12	11	7
TGGGCCCCTTCATGAC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TTTTGTCGTACTACCT	ref_5892_new	169	134	204	194	157	182	224	171	177	140
TAAATTAGCTGGTTGG	ref_5892_new	10	18	18	16	10	8	19	7	18	13
TCTGCCGGCTATATTA	ref_5892_new	18	37	36	20	30	22	28	23	38	19
CTGTGAACTAGGTAGG	ref_5892_new	44	28	25	13	25	19	25	19	31	34
GCTGGTAGTTTAGGTG	ref_5892_new	13	8	21	11	7	7	17	12	18	7
GCCATTTTTCAATTAG	ref_5892_new	0	0	0	0	0	0	0	0	0	0
ATTCGTTTACTCAGTG	ref_5892_new	31	35	27	28	17	16	33	15	31	23
CCAGGAGACTCCCATT	ref_5892_new	3	6	2	3	2	3	3	0	5	5
GGGCTCTTCGTCATTT	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GCTTAGTAAAGGTTCA	ref_5892_new	0	0	0	0	0	0	0	0	0	0
CCTGCTAGTAAAACCC	ref_5892_new	7	15	5	3	10	6	9	10	12	1
GGCTCAAATTCCAATG	ref_5892_new	18	23	25	20	17	15	16	14	20	12
TCATCTTACTTTGTAC	ref_5892_new	53	80	62	65	75	47	98	47	59	48
CTAATGCCATTAGGCT	ref_5892_new	10	18	17	15	16	18	16	9	14	8
CGTAATGCGCGATCGC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GGGATTGTGGGTAATT	ref_5892_new	8	7	20	8	7	10	6	10	2	6
CATTGGCTTCGTCTGG	ref_5892_new	4	0	2	2	3	2	1	1	2	2
GCACGGTCCTCACAAT	ref_5892_new	28	27	40	23	38	16	33	36	28	22
CACGACACTGCATGAT	ref_5892_new	8	11	19	13	13	13	12	13	20	14
GTGCATGCGAATCTTG	ref_5892_new	41	52	41	57	31	30	43	51	46	33
CATCCCGCTTCTTCTG	ref_5892_new	11	21	15	14	30	20	24	17	28	20
TCTATGCCGAGTGCAG	ref_5892_new	36	23	27	30	48	20	27	34	37	30
GTCCGTAGGCGATCCC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
GAATCTACCAGGTACC	ref_5892_new	0	0	0	0	0	0	0	0	0	0
TACAAGAAAAGCTGGG	ref_5240_upstream	31	25	36	32	21	37	20	32	20	24
AGCAGAATTTCCGTGG	ref_5240_upstream	29	22	33	34	19	25	21	34	21	23
GCGCAAATCCGGGAGC	ref_5240_upstream	642	415	808	724	409	739	404	647	472	640
TCCAATCGGCACCGCT	ref_5240_upstream	216	103	267	272	135	191	112	239	109	198
CAACATTATACTTGAC	ref_5240_upstream	360	186	453	383	184	342	201	367	184	352
CAGTAGAGTTCCCAGA	ref_5240_upstream	123	56	153	111	82	121	75	116	66	100
GCTTCGTACTTAGTTT	ref_5240_upstream	15	15	22	22	14	34	11	28	15	24
ACACGCTGGTCAGCAA	ref_5240_upstream	30	18	40	38	13	30	17	42	24	33
TACTCAGCTGTATCAT	ref_5240_upstream	283	163	390	342	182	338	210	276	173	282
TAAGAGGGAATGGAAC	ref_5240_upstream	28	26	26	28	16	24	13	29	19	19
TGCCTTCCCAGTCTTC	ref_5240_upstream	64	39	83	67	44	53	51	76	48	61
GCCGGCGGCCCGCTCA	ref_5240_upstream	55	33	87	72	36	52	30	59	24	57
GGTGTCTGTTCCGTTA	ref_5240_upstream	53	30	79	57	35	66	39	66	39	73
TGCGCAGCTCCTCGCC	ref_5240_upstream	35	19	33	30	14	24	16	26	20	27
AACTCACTGTAGCGGG	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCGATAGTGATTC	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCATTAAGCCAAG	ref_5240_upstream	65	39	89	71	44	71	47	59	51	81
TGTACTGCATTCGATA	ref_5240_upstream	208	135	270	221	124	196	138	212	133	177
GTTGAGAATACATTAC	ref_5240_upstream	209	134	274	220	138	206	136	218	130	210
ATGTCCTGTCCCGGTG	ref_5240_upstream	125	45	116	103	57	103	79	88	52	112
CGTTCTGTAATTGTCA	ref_5240_upstream	127	83	177	147	60	143	71	122	95	128
TCTTGGTTCTTCAAGA	ref_5240_upstream	213	99	229	223	86	189	95	188	119	188
ACAAGCTCGTCCTCGT	ref_5240_upstream	92	80	115	98	82	73	66	89	77	86
CGCAGGATCTGGTCAA	ref_5240_upstream	114	57	156	156	51	123	62	131	59	108
ACTAGCTCTTGGTCAT	ref_5240_upstream	133	82	161	140	95	130	87	140	90	139
GTGGCATAGGAGACTC	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGTCCGAAACCAA	ref_5240_upstream	303	171	412	346	198	300	178	323	183	306
CGGGACACGCTAAACG	ref_5240_upstream	76	46	116	84	51	90	27	73	54	78
CTTTGCCCAACTCCCT	ref_5240_upstream	61	47	53	52	23	58	32	40	33	44
GGTTTCTGCGTACGAT	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTTTAATAGCTTG	ref_5240_upstream	139	53	148	150	70	123	78	108	91	119
ATATCCCGGTTTTTCA	ref_5240_upstream	26	15	40	36	13	27	9	38	9	29
ATACGTTACAGTATGT	ref_5240_upstream	135	83	178	170	104	134	105	140	105	171
GGCCTTTCTATACACA	ref_5240_upstream	79	45	87	87	46	77	44	83	30	78
CTGTTACTTCGGTTCT	ref_5240_upstream	74	35	103	87	41	58	40	79	31	57
CGGTGCCCGGCGTCGG	ref_5240_upstream	77	21	74	55	36	48	31	56	18	69
AGGTCACCATGCTCTG	ref_5240_upstream	210	120	265	239	113	202	136	195	129	208
GTGCAAGGTTTTAATA	ref_5240_upstream	36	18	63	40	18	28	21	41	17	25
TATTTTAGATCATGCA	ref_5240_upstream	5	6	1	4	8	2	5	1	5	2
GGTAGATAGACAAACC	ref_5240_upstream	183	98	236	179	112	160	103	181	107	161
CACTCAGCGCCAGATT	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCAGGTCAAGCGC	ref_5240_upstream	10	25	11	10	41	5	25	12	18	10
TTCCGGCTGGTAATCT	ref_5240_upstream	8	4	19	11	7	11	2	15	8	13
CAATCATTCCTTTGCT	ref_5240_upstream	72	37	79	86	38	46	24	66	52	54
GTGAAGTGTTACTCTC	ref_5240_upstream	798	418	962	862	424	745	434	683	400	691
TTGCACTAGCCCCCGC	ref_5240_upstream	1	4	0	2	6	1	2	2	2	3
GAGTTGTCATCTTGGC	ref_5240_upstream	186	104	235	263	127	191	130	232	146	193
GGCCACGTACTTTTTC	ref_5240_upstream	34	22	49	57	31	31	36	57	40	47
CGGATTTTACTGGAAA	ref_5240_upstream	129	46	105	103	64	84	66	99	73	98
GGGTAGACCGATGTAT	ref_5240_upstream	70	37	112	74	42	78	59	74	53	85
TCCGAGAAGATAGCGA	ref_5240_upstream	206	86	189	188	90	165	79	144	88	168
CCGCTTGACTGGATTA	ref_5240_upstream	37	48	55	35	38	37	39	40	44	43
AATGAATCCGATACCC	ref_5240_upstream	272	186	312	270	153	224	152	300	182	229
CAGCCGGTCGTCATCG	ref_5240_upstream	17	32	18	22	21	16	31	16	20	22
CCTAACCACTGTTTCT	ref_5240_upstream	8	11	6	11	9	6	10	7	9	7
CCAGCGAGCCCAGTGT	ref_5240_upstream	10	23	28	18	17	21	16	19	18	19
TCCATTAAATTTATGA	ref_5240_upstream	4	3	3	3	3	0	4	3	7	3
TAATTCGAATAACGTT	ref_5240_upstream	34	10	30	35	17	35	13	22	12	34
CTGTTGTCGCGTGTGC	ref_5240_upstream	166	105	208	222	117	181	123	191	109	184
TTAGTGTTTACCTTGA	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGATGTACACACC	ref_5240_upstream	90	72	104	100	84	112	66	87	96	97
AGCTTTAACCGGTGTA	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
GACAGTCGCGCCAGGG	ref_5240_upstream	488	262	563	519	236	512	268	449	247	436
GTTCTATGTTAGCGTT	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGGGATGTCTTAT	ref_5240_upstream	161	77	194	183	93	176	79	149	78	147
AAACCCATTATGTTTA	ref_5240_upstream	192	98	232	232	104	207	79	194	106	164
TGCGGCCTCCGTACTT	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTACAGGGTCGT	ref_5240_upstream	55	30	50	46	16	46	28	44	20	51
CCCTTCTTCGGTAATA	ref_5240_upstream	0	0	0	0	0	0	0	0	0	0
ACAAACTCTGTATTTG	ref_5240_upstream	84	39	108	70	56	80	49	105	34	77
GTATTGAGAGAAGCTC	ref_5240_upstream	123	58	133	122	54	114	61	101	68	108
TAACATTTTCTTAAAG	ref_5240_upstream	10	4	15	11	6	7	2	6	10	5
GCTCACTTCTTGGCGC	ref_5240_upstream	33	14	26	24	11	22	16	22	21	21
GAGCGAAAGTCTGACA	ref_5240_upstream	73	45	83	101	56	98	54	73	58	81
TTCTGGAAGCAATCCG	ref_5240_upstream	49	41	88	89	45	76	54	69	47	69
CTAGTGGGAAACTCGC	ref_5240_upstream	200	97	227	204	127	161	115	217	122	200
ACGGATTTCTCTGGCT	ref_5240_upstream	36	14	48	32	16	39	13	42	19	35
TGCGTGGCCTCTAAGG	ref_5181_upstream	26	22	23	18	17	10	26	16	27	7
TGCTGCAGTATTCGGA	ref_5181_upstream	0	1	2	6	0	1	0	0	2	0
TCTTGTCACCGTCAAC	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
CATTGGTTACCTAGTG	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
CCCATGCATACGCTCA	ref_5181_upstream	4	15	11	11	18	10	25	8	28	12
CAGCCTTCAATTGGAG	ref_5181_upstream	40	99	54	26	75	40	96	53	101	49
GCGGGACCCCGTCTAG	ref_5181_upstream	2	6	7	6	7	9	5	5	8	4
AAAACTTTGCTTTAAG	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GAGTGAGGACATGTTG	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GGAATTTCAGTGGCCC	ref_5181_upstream	11	11	12	19	18	5	16	12	16	16
TTCTAGCTAGCTAGAT	ref_5181_upstream	3	12	5	4	4	2	10	2	12	4
TTCGTTATTTGCCTCC	ref_5181_upstream	21	15	22	10	15	15	19	8	23	18
TTGGCGGGACACCATA	ref_5181_upstream	37	49	47	39	32	42	53	23	33	42
TCCAGAGTTGCAAAAA	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGTGAGACGGCAC	ref_5181_upstream	38	46	58	38	46	49	42	54	43	43
GAACCTTCCTGCCAAT	ref_5181_upstream	16	25	29	18	17	16	21	16	29	15
CCATCTCGTGTAGCAC	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTTAGTCATGATT	ref_5181_upstream	39	54	41	47	51	35	63	30	72	39
TCCGTCTCTTATCCCG	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAATATAGTCTTC	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTATAATTCACGA	ref_5181_upstream	48	64	66	56	40	35	56	40	66	52
TTAATTACTGGAATGC	ref_5181_upstream	33	33	30	24	38	29	35	28	36	23
GCGCACTCGGGCGTAG	ref_5181_upstream	0	1	0	0	0	0	0	2	3	0
ATAATACGAGGCAAGA	ref_5181_upstream	40	25	27	24	32	31	22	19	39	22
TAGCATCGCCGCAGAT	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCCCTGGATATTG	ref_5181_upstream	16	16	18	15	19	12	18	12	16	10
CCCAGGGGGAGGCTTT	ref_5181_upstream	184	200	199	172	192	157	231	169	226	156
TATCCTGGAAAACATG	ref_5181_upstream	45	41	56	44	41	36	41	51	72	32
ATCTGTCGTTTAAGGG	ref_5181_upstream	35	66	66	51	43	49	43	43	67	47
GTCTGGAATCGCCGTC	ref_5181_upstream	68	88	87	58	68	52	80	64	71	56
CCACCACCATTCATGC	ref_5181_upstream	3	29	11	8	33	7	19	8	19	6
GTATGGCATGTGCACG	ref_5181_upstream	67	59	58	78	95	62	102	67	94	65
TAGAGTTCATTCAGTC	ref_5181_upstream	3	18	8	9	10	2	14	3	11	5
GCGTCGATTTAACGTT	ref_5181_upstream	48	79	65	68	92	56	107	57	95	60
CCGGCCTCCACACACC	ref_5181_upstream	8	12	7	8	10	9	6	11	22	2
TACGCTAGGAAAATAC	ref_5181_upstream	31	64	43	41	46	33	68	33	59	34
ATCGGACCCATAGTAG	ref_5181_upstream	0	0	1	0	0	1	0	0	0	0
CCCTCAAGCTTAGCTA	ref_5181_upstream	8	6	8	9	11	8	14	5	11	7
AAGCTTTTGCTGGTGT	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCCCACAGGTTA	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCAGGTTGGAGGG	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GGATGCCTTCTGTTTA	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GGCGCATGATTGAGCG	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTTTGGACGAGA	ref_5181_upstream	10	13	5	15	10	9	13	3	10	8
GATTTTGATGTGATTG	ref_5181_upstream	110	129	117	101	120	91	129	94	153	88
AGTTTAATTTTTACCT	ref_5181_upstream	66	66	39	46	83	65	56	41	63	45
TCATTCTAGGCACTTT	ref_5181_upstream	0	4	1	1	4	3	2	5	4	1
TGGGTTATGTTCGCCT	ref_5181_upstream	22	33	24	23	42	28	22	28	25	18
CTTTCTCGTGCCTGTA	ref_5181_upstream	9	11	7	7	10	9	17	8	15	5
TCTACGTATATTTCGA	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
AACCCGCGTTGTTCTA	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
TGAGGCATCGGATAGC	ref_5181_upstream	20	29	21	23	14	11	28	8	31	18
CAAGCTAGTTTGGCAC	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGCCCCAATTCCT	ref_5181_upstream	16	9	37	10	17	21	25	22	17	23
TCCTTACACTGCTTGG	ref_5181_upstream	2	5	1	1	6	0	6	0	1	1
GTTCTACGGCCACACT	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
TCACAGTCTCTGCATG	ref_5181_upstream	0	0	0	0	0	0	0	0	0	0
AATGCTTATCCGCCTT	ref_5181_upstream	91	73	89	75	92	93	78	71	96	68
GTGTTGTCGTCTGTTG	ref_5181_upstream	18	18	14	21	25	10	17	13	31	24
CGATGAAGACTTCGAA	ref_5181_upstream	9	8	17	10	9	10	8	4	7	6
CTTTTGTCGGATTTAG	ref_6002_new	25	58	37	29	49	36	51	32	45	25
GTTGGTCGCGGATGTC	ref_6002_new	26	47	34	15	47	24	35	18	44	16
ATTTGATTACTGCGCT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
AAAATGCCTCATTAGC	ref_6002_new	11	13	6	11	21	12	23	8	28	6
CACAGACTTCTATAGT	ref_6002_new	8	26	11	6	25	9	17	12	17	8
GTCTACATGTGGGTTT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TTTATTTAAGTTCTCC	ref_6002_new	24	63	34	23	49	34	52	24	42	26
GGGCCGTGCTTAATGT	ref_6002_new	5	5	5	8	8	3	12	2	4	2
GTTTCCGTGCTTAAGC	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TTATCCGGCTCTCTCT	ref_6002_new	9	19	10	13	6	3	22	2	20	5
ACTCCATTGTTACCGC	ref_6002_new	9	35	31	20	44	14	26	6	28	13
AGACTCGTCTACTGTT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
CACCAATGGTGATATG	ref_6002_new	12	47	30	12	40	14	29	15	45	19
TACCAGCTTGCGTTTT	ref_6002_new	6	9	3	4	9	5	10	8	7	2
CCGTGTTTGCTATTTG	ref_6002_new	85	149	96	80	163	61	183	80	191	73
ACTATTTTATCAGTAA	ref_6002_new	27	49	36	30	60	31	53	35	74	43
TCTTCTCTGGTTACAT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GGCTGCGTCCTGTTAC	ref_6002_new	11	14	5	6	14	6	17	6	18	6
ATGGTGTTAACTAGAT	ref_6002_new	40	95	77	64	85	38	102	51	106	52
GTAACCACGGTTTGCT	ref_6002_new	18	29	20	16	18	12	18	20	20	17
CTCGCCGTCAGTATAC	ref_6002_new	4	22	9	6	11	13	22	1	22	4
GGGGGTCCGGCCCATC	ref_6002_new	6	14	6	5	7	14	6	7	7	5
TCTTAGGTGTCCGTTT	ref_6002_new	38	68	36	47	56	38	64	28	53	26
CTTTCTCCGCGGTATT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GTATTAGACTACTGCG	ref_6002_new	19	31	15	20	36	8	43	10	31	22
CTCTGAGTCAGTTCTC	ref_6002_new	16	35	13	12	24	9	34	16	34	12
CTGTGTTCCAGATGTG	ref_6002_new	44	102	54	40	83	48	96	39	92	44
GCACTCTGCGACATCT	ref_6002_new	31	57	35	32	47	26	59	21	51	24
GAATAGTCACTCGCGG	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GGACTCAGTCGCAAGC	ref_6002_new	7	22	13	15	13	8	19	7	19	8
TTGTCCACATCGGAAT	ref_6002_new	40	67	61	37	81	28	70	49	74	32
CTGACTGGCATTATTA	ref_6002_new	10	14	16	17	8	11	19	12	11	7
CGATGGTAAATTCCAC	ref_6002_new	0	6	4	1	4	2	3	1	8	1
TGCTTGCGATGCGTTG	ref_6002_new	0	0	0	0	0	0	0	0	0	0
CCCAACATGACCGTCG	ref_6002_new	50	91	45	60	84	45	104	49	74	42
CTTCTATCAAGTTCCA	ref_6002_new	44	62	49	34	48	45	66	31	57	29
CTCCCAGAATCAGCAG	ref_6002_new	21	20	9	13	20	9	24	9	20	11
TTTGAGCAACTCGGGT	ref_6002_new	4	5	3	3	5	5	2	4	8	7
TTGTCACCTGCCCTCA	ref_6002_new	40	69	31	34	50	30	96	35	74	27
CAGGGTTTTGTACGAC	ref_6002_new	51	105	56	61	82	45	111	46	116	48
GGGGCTCGCCGGTGTA	ref_6002_new	27	45	40	36	32	27	55	31	52	37
TTTAACCACGTTGAAG	ref_6002_new	11	34	21	14	28	11	32	12	42	12
TAGTGCGGAGGGATTC	ref_6002_new	7	19	8	15	18	9	16	8	7	8
TAGACCAATCCTATGC	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GTTGGAACTCGTGCCC	ref_6002_new	20	43	17	15	34	20	42	15	40	16
CGTATTTATGCAGGTT	ref_6002_new	10	19	10	3	25	5	23	7	19	5
AACGCTGCTCTGTTTC	ref_6002_new	47	48	28	48	56	33	58	47	65	36
AATGTTGACAGGTTGG	ref_6002_new	48	79	49	38	78	43	61	38	80	54
GCGAGCGTTCTCTGAG	ref_6002_new	19	32	30	23	29	10	49	23	32	18
GTTTATATGTCGGATC	ref_6002_new	28	34	41	27	32	32	38	32	42	19
GCTCTGTCCGCAAATT	ref_6002_new	22	54	35	23	53	25	46	22	52	27
TTATAGATAATTTAAA	ref_6002_new	12	25	20	16	21	18	46	11	13	8
TCTTCCCTTTTGAGTT	ref_6002_new	44	66	72	47	65	55	82	37	86	42
CGAGGTGAACCGAAGT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GCAAAAAGTAGTCTTG	ref_6002_new	2	9	7	6	9	1	10	4	11	4
CACTATCCCAATGCTA	ref_6002_new	6	6	12	3	9	7	7	5	22	10
CATCTAAGATTGGAGT	ref_6002_new	29	69	27	38	52	27	61	29	50	19
CCTCTACCTTTGTCCG	ref_6002_new	40	73	45	48	67	41	61	33	95	34
GGGATTGATCCTTTTT	ref_6002_new	137	204	145	140	176	122	223	110	172	104
CTCCTTAAGTGCTGGT	ref_6002_new	4	11	2	3	8	4	10	0	16	3
AACAAGGTATGACTAC	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GGGAACGCAAAGAAGG	ref_6002_new	4	11	1	5	14	4	8	8	8	9
ACTTATGCATTATCTA	ref_6002_new	7	13	4	0	8	4	16	4	13	4
TGGTTAGCCCGCAATT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
AGTTGTCGTGGCCGTG	ref_6002_new	37	42	27	21	57	21	63	35	43	25
GATGGTCTTTTCGGCA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GAGCCTTTCCAATCAA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
CCCGTGTAGCGCAGCA	ref_6002_new	5	4	8	6	15	1	3	7	6	3
TCACTCACTCCTTTGA	ref_6002_new	25	42	29	28	40	36	43	21	48	25
CATCCTCAAAGGGTCC	ref_6002_new	12	26	9	22	36	19	32	16	43	13
TGTAAAACTTTTCCCA	ref_6002_new	10	15	11	6	10	8	17	8	13	7
CTAGTTCACCGGTTTT	ref_6002_new	7	34	12	9	30	12	25	12	24	17
GTTTTGTGCATGGGCC	ref_6002_new	24	33	22	16	36	21	35	18	30	20
CGGATCGTTGCGATGT	ref_6002_new	25	50	50	37	46	27	55	30	50	36
CATGACTATAGGCTAT	ref_6002_new	6	15	12	8	13	10	15	6	18	6
GGTAGATTCCGTTGTC	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GTTGGACCTAAAGCGC	ref_6002_new	15	36	14	19	31	25	33	10	33	14
AGTTCCTTAAGACGGC	ref_6002_new	39	65	27	32	60	50	78	44	62	45
GTTACGGGTGCTGCGT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
CATGCTCGGAACCTTA	ref_6002_new	53	79	61	54	88	44	98	46	79	40
AGCTGTCCCGGACAAG	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TCTTTAAACAACTGAC	ref_6002_new	30	53	37	18	58	23	64	37	55	28
CCTCATTTCATCCAGC	ref_6002_new	36	54	47	30	57	41	52	41	73	31
TAGTGGCTAGAGGACC	ref_6002_new	34	57	43	30	53	49	81	34	73	36
CCTGTCTTTCACGCTG	ref_6002_new	10	82	18	16	101	14	100	11	119	6
TGTTGCGTATTTCTTG	ref_6002_new	3	2	7	3	3	7	6	6	11	7
TTATATTGTGAAGAGG	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TGCCGTCTTTTGTCAC	ref_6002_new	3	5	2	2	2	4	7	3	11	4
GGAAGACATCCGCCAA	ref_6002_new	22	32	16	13	27	13	38	14	19	13
TCGCAGAGGAAAGTCA	ref_6002_new	7	11	11	11	10	5	21	11	12	5
CTCTCTTTTTGAAGGT	ref_6002_new	5	18	5	6	7	2	8	2	9	5
CATTGTAAGCATCCTA	ref_6002_new	134	217	131	125	210	102	249	112	278	116
AACGGCCTAACGTGCT	ref_6002_new	9	21	13	10	23	25	25	12	29	4
CCTGGACGCTCGGAGA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GTCCGGTTGCGCGGAG	ref_6002_new	7	11	13	3	6	5	12	2	8	8
GTATTGTCTAAGAAAA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
CATGGTCACATTTTTC	ref_6002_new	1	0	0	0	1	1	1	1	1	3
CATCGACCTTCCTCGA	ref_6002_new	14	32	20	21	44	19	37	10	36	21
AGTGGTCTCTTCGCCC	ref_6002_new	0	0	0	0	0	0	0	0	0	0
CGAAAATACATCCTGA	ref_6002_new	89	139	90	99	160	93	142	78	140	87
ATCTGACTCGCTTATG	ref_6002_new	5	10	1	5	7	3	7	3	8	7
ACAGTTGAACCAGTTC	ref_6002_new	2	3	6	1	3	2	2	1	5	0
GCTGGAGACGAGGCTT	ref_6002_new	14	21	23	11	21	12	18	15	21	12
TATACCCGGCTTCGAT	ref_6002_new	8	17	9	8	20	6	22	6	14	7
ACCGTTCCGCGTAACC	ref_6002_new	0	0	0	0	0	0	0	0	0	0
ATAGTGCCCGATACGA	ref_6002_new	52	93	67	60	97	49	90	43	121	47
AAAACCTGCGCCTATT	ref_6002_new	26	46	25	27	39	15	50	24	52	22
AATCCGCATATACAAA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GCTAGCTACTCGCTCC	ref_6002_new	4	13	5	4	14	14	19	7	21	7
GTAAAGGTTGTAACAT	ref_6002_new	32	35	37	20	42	25	55	22	44	28
CATCTTAGGCCTGTGT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TGCGAACCGTATAAAT	ref_6002_new	33	56	30	27	64	22	61	29	57	27
AGTGGCATAAATTGGA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TATCCCAGCGCAGAGC	ref_6002_new	17	36	23	22	27	14	34	15	33	14
TTTCTTCTGGTCGTGA	ref_6002_new	89	141	101	102	146	83	144	91	137	88
TCTGTTCGACGACCAA	ref_6002_new	9	46	22	16	36	11	37	12	37	8
CCGTTCACTCGTACTA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GTTGAGTGCACATTAA	ref_6002_new	19	45	25	20	52	26	39	14	74	26
GAACACGGAATGCATA	ref_6002_new	14	31	21	12	28	23	39	17	42	21
AGGCCTCATTATGTTC	ref_6002_new	29	53	35	18	46	28	73	24	56	24
CGCCTTTTCCATTGTC	ref_6002_new	17	30	21	20	27	14	35	19	27	5
GCCGAAGGTCGGGAAG	ref_6002_new	12	37	8	9	41	10	46	10	49	13
TCACTACTTTATCAGT	ref_6002_new	4	4	4	4	4	3	7	5	3	2
TCAGCAGAATTGAGAT	ref_6002_new	33	61	61	35	70	28	55	51	79	35
TTGTCCCCTGCCCTCA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
CGTCGGTATAGTCCTA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
ACGACACGTAGTGGGT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TTTGCTGGTAGTTCAA	ref_6002_new	2	2	1	3	5	2	10	4	8	1
CCAATATATATTGTCG	ref_6002_new	150	316	179	156	348	153	335	121	321	152
CCGTTTACGCCGCGGT	ref_6002_new	11	20	19	7	18	8	20	10	26	13
TCTGCGCGAATACAGT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
GACCAATGGGTTTCAG	ref_6002_new	9	21	9	4	5	4	10	8	17	3
CGGGACTTAGCCCGTA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
AAAAAGTACACGTCGG	ref_6002_new	35	66	14	29	65	21	77	12	86	26
TCCGCTGCATTGATGC	ref_6002_new	18	94	26	31	136	25	118	20	116	10
TTAATGAAGTTTTCTA	ref_6002_new	40	64	43	33	53	32	67	23	64	37
GTTCTTCAGTTTTATA	ref_6002_new	22	38	19	29	36	25	37	16	38	18
CACATGTTAGGTTATT	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TGTCTGGCCACGCTTC	ref_6002_new	17	14	12	20	25	10	28	14	21	6
CCAAGGACGCAAGTTT	ref_6002_new	29	49	49	19	45	33	62	32	46	33
CTTGCCTTTGTTCTCG	ref_6002_new	10	9	8	9	7	6	9	2	10	5
GGAGCCACATGTACGA	ref_6002_new	12	12	11	7	20	10	23	5	17	10
TTGTGTACTGGGAAGA	ref_6002_new	0	0	0	0	0	0	0	0	0	0
TATACATTGTTGGGGG	ref_6002_new	27	35	34	24	40	30	22	24	28	22
CGTACGACTTTTAACA	ref_6002_new	11	25	12	7	23	1	22	7	28	13
ACCTATATTCTCCACC	ref_6002_new	0	7	1	6	6	3	11	4	4	3
AAGCTATGGGTTTGCG	ref_6002_new	22	29	15	11	27	12	31	13	22	13
TCTTTTTTTTCGGCTT	ref_6002_new	8	29	27	22	34	21	42	16	32	15
GCCGCTCCCAGTTTCT	ref_6002_new	22	33	23	20	47	18	39	18	40	17
AGTGCACGATCGTACC	ref_5776_new	0	1	0	0	1	0	0	0	2	0
TTAATTTCGCTGAATC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
GTTTCTTCGCTGTTAG	ref_5776_new	30	51	41	33	43	31	44	28	51	27
TCACTTGGTGTGGCTT	ref_5776_new	29	52	21	35	53	32	40	30	48	23
TGGTCGGGGCCCTATC	ref_5776_new	24	28	37	27	41	21	16	21	27	19
GCGTAGCCCGGTTGGC	ref_5776_new	5	52	15	9	50	11	53	10	44	5
AACAGTTATTAGTGAT	ref_5776_new	65	117	81	67	163	55	136	83	162	52
AGCTCTGCCATCTATA	ref_5776_new	12	32	18	17	25	11	33	15	41	8
AAGCCTGACTACGCTT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TTTGGTCGCCTCCACC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
CACTGACTCTCAATTT	ref_5776_new	40	50	44	40	46	46	46	39	41	41
TACGTCCACCTCTTAG	ref_5776_new	16	41	23	22	33	27	39	29	40	26
CACGGGTTTCATTCGC	ref_5776_new	4	5	4	8	4	3	3	1	2	1
GCTCTCTAGTGTATTC	ref_5776_new	0	7	7	2	1	1	5	0	1	0
TAGGGTAGGTCTTTAT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TTTCTTTCCAACTCAG	ref_5776_new	20	24	24	23	29	26	34	20	48	19
AGACATAAGGCCGTAC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TTTTAGGTTCTCATGC	ref_5776_new	2	4	4	3	2	3	2	4	2	1
ACTCTCGAGTATGTGT	ref_5776_new	9	18	11	3	11	9	11	9	10	1
AGCCGGTCAGTGCTTA	ref_5776_new	11	31	18	12	28	12	36	11	37	11
TCGTAAGCATTTTGGC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
CCCCTGCAGCTATTCG	ref_5776_new	61	131	83	79	93	67	108	48	106	60
CAGCGTCAGCGAGTTG	ref_5776_new	27	50	32	22	66	27	44	18	55	18
TCGCATGAAACTTTTT	ref_5776_new	13	23	14	7	11	8	15	22	18	8
TAACATTCGCGGGCGT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TAGTAGGCGTCATACT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TTCACCTTCCTCGATC	ref_5776_new	17	19	19	12	28	10	25	16	27	21
GTTGCCTTGTAATACG	ref_5776_new	82	143	95	76	109	65	140	60	107	70
GGTATTGTGGGCCCTC	ref_5776_new	50	61	56	35	74	42	56	33	58	33
CCCAGTGCGCATTTAC	ref_5776_new	36	64	41	35	50	34	65	36	52	33
TTCTTATGTCATCGTT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
CTAGGGTTCGAAGTCC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
CCCCTCTGGAATGGGG	ref_5776_new	0	0	0	0	0	0	0	0	0	0
AGTTCGTACTTAACCA	ref_5776_new	5	6	2	10	13	7	6	5	7	4
TTCCTTCACCCCTTAT	ref_5776_new	20	49	34	35	45	31	42	30	40	22
ATAAGCCGTCGCCACC	ref_5776_new	8	21	9	15	20	4	20	15	13	6
GTCGTACATTGCAAAT	ref_5776_new	23	29	18	18	33	18	16	16	38	19
AGGAAAAATTGCCCTA	ref_5776_new	35	52	41	33	39	29	58	28	35	33
CACTATATGTTATTAG	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TCATCCAGTGTATTAG	ref_5776_new	28	43	45	30	39	35	50	21	53	22
ATCATTATGCGTGTGA	ref_5776_new	16	28	17	4	23	12	16	10	31	10
CGTGTGCGAAAAATAA	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TTCTGAATGCCGGACT	ref_5776_new	13	16	19	21	17	12	15	18	25	15
AGCCCAGTATGAAAAC	ref_5776_new	32	46	29	34	42	29	43	21	60	17
GTCTCCTTTCGTCCAC	ref_5776_new	3	7	7	7	7	6	8	4	13	5
GCTTCCTGTGCTGTGG	ref_5776_new	15	23	22	24	46	25	27	22	31	11
GTTCCTTTACTAATCG	ref_5776_new	0	0	0	0	0	0	0	0	0	0
GACCGCGTCCAGTTCG	ref_5776_new	8	9	11	7	17	7	17	6	12	10
CATGTCCCTAGGCGCG	ref_5776_new	65	77	50	36	89	38	93	58	89	69
TTTCCGGCACCTTCCC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TCTTCCGGACGCCGCC	ref_5776_new	32	43	40	26	55	34	52	35	66	51
CACATCGGTACACATT	ref_5776_new	45	105	56	30	91	35	89	46	88	47
TGGGAGGTTACTTCCT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
ATTCTTTCCGTCCAAT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TCCGTGGTCATTGCAC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
ATAAATTGAACTTCCT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
TTCAGAATCTCGGCAT	ref_5776_new	11	12	20	10	20	11	26	18	24	11
TCTTTCCTCGTGAAAT	ref_5776_new	92	146	88	91	124	83	135	83	150	71
AGAGGTGTATATTATC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
ATTCCCTTTTAGATGC	ref_5776_new	0	0	0	0	0	0	0	0	0	0
CGTTTACGATGTATTT	ref_5776_new	34	39	30	20	35	30	39	18	30	20
TTGAGACTTGTTCGGT	ref_5776_new	0	0	0	0	0	0	0	0	0	0
AAGCCAACGGTTCACA	alt_5776_new	6	15	8	7	19	7	25	7	26	4
TATCAGGCAGGAATCC	ref_5668_new	0	0	0	0	0	0	0	0	0	0
CCAAACCCGACCTCCT	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TTGCCAATTTGGGTTA	ref_5668_new	5	17	15	4	16	9	21	14	18	6
TTTACGATACAGGCCA	ref_5668_new	13	14	15	12	13	10	19	6	13	9
GTAATAATGAAAGCGG	ref_5668_new	14	22	14	11	16	11	14	7	17	9
CAATTCCATGGTGCAA	ref_5668_new	1	3	4	2	1	4	2	2	1	1
TTCTTGCTGGCTAAGT	ref_5668_new	38	39	31	28	51	34	40	26	42	21
TGCTGGATCTGCATTC	ref_5668_new	56	82	70	44	95	61	109	54	109	44
ATCAATCTGTCTGGTC	ref_5668_new	0	0	0	0	0	0	0	0	0	0
CGCTGTCCCGAATGGC	ref_5668_new	1	2	2	0	1	1	2	1	1	1
ACGGTTATTGGCGCTT	ref_5668_new	0	0	0	0	0	0	0	0	0	0
CTACCGGAAGAGCCAC	ref_5668_new	0	0	0	0	0	0	0	0	0	0
GTTGGGTCTGCCTCTA	ref_5668_new	4	18	3	6	7	4	8	9	14	3
GATCTTGTGTAACGCC	ref_5668_new	10	24	13	17	16	13	19	8	16	13
CCCCATGCTTTGCCCA	ref_5668_new	64	125	82	89	96	90	113	64	128	69
TGGCGGGCGATGTAAG	ref_5668_new	0	0	0	0	0	0	0	0	0	0
GACCAGTCATGATGTT	ref_5668_new	38	81	52	49	102	54	82	55	74	40
ATTATCAATCTGGCCA	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TTCACGCATTCTGTAA	ref_5668_new	12	20	11	6	29	8	19	10	15	10
AAACCTTTTAACCCTT	ref_5668_new	18	8	11	5	6	8	12	5	10	8
CACTCGGCGGTATTAG	ref_5668_new	0	0	0	0	0	0	0	0	0	0
AGTTAAACTGGCTGTG	ref_5668_new	27	29	22	26	36	21	28	22	53	30
GCAGGACGGGGTCTTT	ref_5668_new	25	35	23	26	27	28	54	27	47	25
TCACCCGGGCTAGCGC	ref_5668_new	5	13	4	2	6	6	10	7	11	3
TTGCGTTGGAATGTAC	ref_5668_new	16	29	28	13	26	19	21	10	22	15
TCCTAATGTCTTCCGA	ref_5668_new	12	19	21	13	25	18	16	10	23	5
TAGACTGTATTCGCAC	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TTAAGACCATGTCCTC	ref_5668_new	16	26	23	19	44	19	48	24	41	17
CCATGTGCATTTGGGC	ref_5668_new	2	8	0	5	8	1	4	3	5	4
TCTGGGCAGTACTTAT	ref_5668_new	32	46	36	26	36	27	46	20	48	33
TAGCACTATCTTTCCG	ref_5668_new	27	26	19	11	31	15	36	14	32	14
GCCGAACTTTGGGTTA	ref_5668_new	4	12	3	9	10	6	6	0	6	4
TTCAAGATATGGTTCT	ref_5668_new	10	22	9	3	32	20	38	18	38	11
GCTGACTTCCGACTTG	ref_5668_new	41	48	41	41	40	26	39	25	47	22
CCTCGAGTTGTGCCGC	ref_5668_new	13	19	19	11	16	9	21	9	23	11
TCCCTCTCTACCTGTG	ref_5668_new	0	0	0	0	0	0	0	0	0	0
ACAGTGGTCGGAAGGT	ref_5668_new	0	0	0	0	0	0	0	0	0	0
GTTAATTTCATCCTGG	ref_5668_new	0	0	0	0	0	0	0	0	0	0
ACACCTGTGGCCCTGG	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TTTTGTCAGTAGGGAG	ref_5668_new	3	3	2	2	1	0	2	1	6	0
CTTTGTCGCCGCCCCC	ref_5668_new	38	46	63	35	76	46	64	28	88	26
GGTTTCCCACAGATCC	ref_5668_new	76	92	106	70	112	66	123	74	118	81
TAGTAATATTTAGCGG	ref_5668_new	28	41	43	27	29	22	49	20	39	21
TATCGTACTCTAGGTG	ref_5668_new	0	1	2	5	1	1	3	0	0	1
TGGTTTCTGTCACATT	ref_5668_new	16	19	27	19	22	16	23	12	25	14
CTGTTGCTCTATCATT	ref_5668_new	15	16	14	14	23	9	19	18	26	17
AGACATTATGGAACGA	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TATGTACAAACTAGCG	ref_5668_new	23	39	35	32	39	30	42	18	56	16
CTGGTTTCTGGAATAA	ref_5668_new	27	26	22	13	54	21	32	30	41	18
ACCGGGGGCCACTGCC	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TGATCCGCAAGAGCCG	ref_5668_new	0	7	1	0	3	1	1	1	4	2
CAGTTTTGGTGCAGCT	ref_5668_new	19	43	34	46	52	42	53	32	60	48
CGCTCAGCATCTATCT	ref_5668_new	0	0	0	0	0	0	0	0	0	0
ACCAGGAGGGCAGTGC	ref_5668_new	8	7	5	4	9	4	11	3	6	2
GCGTAGTCAGGCTTGT	ref_5668_new	12	13	11	11	14	7	22	9	22	10
CCGTATAGTGTTCACC	ref_5668_new	0	1	1	1	0	0	0	2	1	2
GATCCTACGCCTGAGG	ref_5668_new	12	9	13	9	9	10	11	12	18	3
TGTCCTTCTCACCGGC	ref_5668_new	0	0	0	0	0	0	0	0	0	0
CATCTTTCTTCTCCGG	ref_5668_new	6	10	7	4	9	5	8	9	9	4
CAATTATGAGGTTCAT	ref_5668_new	12	11	16	21	24	10	21	14	12	13
CATGTGCCGCGCATAT	ref_5668_new	22	26	25	23	33	16	37	18	32	17
GCAAGGGGGTATGCCG	ref_5668_new	5	15	14	9	24	6	11	9	25	6
AAATGGCGAAGCGACG	ref_5668_new	6	11	7	3	7	6	8	4	7	6
GTAACTTTTGTCTCTG	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TTATCACTAGGAGTAG	ref_5668_new	0	0	0	0	0	0	0	0	0	0
TACCTTGTCGCAGGCG	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGTTCAATCCTAC	alt_1218_fdr	16	18	23	14	15	20	17	17	15	20
TGCTAGTACCGTCTCA	alt_1218_fdr	68	78	89	71	79	65	57	73	76	90
TGGCTCGCTCCTTCAT	alt_1218_fdr	5	7	11	2	10	6	3	9	5	5
GGAAGTCCAGTCACTG	alt_1218_fdr	27	29	40	29	24	41	17	28	24	25
AACGCGATGCTATCGT	alt_1218_fdr	127	85	128	116	75	99	71	115	110	99
TCGAGGGCGGTTTGTT	alt_1218_fdr	69	37	82	32	36	54	38	42	34	75
ATATTATACACGCTAT	alt_1218_fdr	29	15	34	22	18	27	19	23	28	20
GCCTGCCAAGCTGACC	alt_1218_fdr	45	30	71	43	45	40	27	38	51	43
CGCGATATTGGTGACC	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCATGGCTCGAGC	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTGTCCGCGATTT	alt_1218_fdr	1	0	0	0	0	0	0	0	0	0
AAGGTTGCAGGCGCGT	alt_1218_fdr	164	111	207	123	100	153	94	116	85	133
GTCAGTTGGTTGATTG	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
ATGATCTAGAACAGTT	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGTATGCGGGAC	alt_1218_fdr	97	58	99	72	52	91	47	83	59	63
TTTCCGCTTTCCAGAT	alt_1218_fdr	21	21	23	18	10	12	11	21	8	15
TGTCAAGCTCACAAGT	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTTTAAATTTCA	alt_1218_fdr	4	11	11	10	5	11	9	5	10	12
TTGAATAGTAGGGTCA	alt_1218_fdr	43	21	67	35	34	48	39	49	42	60
CGTAACGGTTGGCTTA	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGCTTCCGCGTAG	alt_1218_fdr	36	30	51	46	43	42	36	51	41	38
AAACTTTCATGTCTAG	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
CGATTGTGGTTGAACG	alt_1218_fdr	20	12	18	21	10	17	23	17	25	13
ATGCCGTGAACTTTAA	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTCGTCGTTTGTT	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTAGCTTTATAAC	alt_1218_fdr	46	42	43	47	29	41	38	37	37	33
CGAGTGCTGTTATCAA	alt_1218_fdr	66	24	50	41	25	62	27	42	20	46
TTTATGGGAATTATCA	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
CTGATGCGCCCTTAGG	alt_1218_fdr	12	12	15	12	9	12	9	7	12	18
GTACTAGAAAGTTGAT	alt_1218_fdr	9	8	10	15	6	9	9	10	4	9
TCTCAGTCTGCCGGGT	alt_1218_fdr	89	43	99	91	36	66	46	76	49	69
TCTGCTTCAATATAGT	alt_1218_fdr	18	16	11	7	8	15	14	11	6	9
CAACATGTAATCCTCC	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGACTGATGTGAG	alt_1218_fdr	74	54	80	69	59	62	43	83	54	77
ATAACTGCTTTACCTC	alt_1218_fdr	30	13	28	21	22	29	16	12	20	18
CGCCGTTATTCACACA	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTATCAGTGCCGT	alt_1218_fdr	39	25	57	33	36	36	25	25	32	45
AACCTATCGTCTTTGG	alt_1218_fdr	0	0	2	1	1	3	0	0	1	4
ACGGCCTAGCTGTGAT	alt_1218_fdr	26	14	15	19	14	16	11	15	7	13
TCCAACGTCGTCTATC	alt_1218_fdr	77	98	101	65	98	87	89	86	106	75
GTGATTGCTCCGTCCA	alt_1218_fdr	15	9	15	9	5	4	10	11	7	16
GCTTTGAGTAATACGT	alt_1218_fdr	36	32	33	24	15	37	30	41	25	37
GGGCAGGCATTAACTC	alt_1218_fdr	14	10	21	10	19	16	14	18	8	14
GACGTCCTCGGCCTCT	alt_1218_fdr	74	40	108	51	65	86	54	92	54	77
ACAACTCCTTGCTCTA	alt_1218_fdr	15	16	27	20	21	14	24	18	28	14
AATATCCTATTGGTGC	alt_1218_fdr	34	18	31	26	17	34	22	38	18	38
ATAGCTCAATGAGTAC	alt_1218_fdr	30	13	39	13	21	36	20	26	21	23
TACCTATCTACAAGTG	alt_1218_fdr	37	17	38	29	28	34	31	28	18	35
GTCTAGGTCGGGTGCT	alt_1218_fdr	60	44	69	56	39	54	55	57	45	50
ATATCGAGTGCCGTTC	alt_1218_fdr	247	148	315	212	140	258	172	214	158	235
TGAGGCTGCGCCGATG	alt_1218_fdr	15	15	16	12	17	16	11	15	11	11
CGAGAAAGTTATTATG	alt_1218_fdr	15	5	17	11	11	22	19	16	10	10
CGCGAGATTTGTGCGA	alt_1218_fdr	44	39	49	26	36	26	28	31	33	31
GACACCACGGCTTTAA	alt_1218_fdr	44	26	54	39	31	34	36	42	40	38
TTACGCTGACCCGGCC	alt_1218_fdr	47	30	59	26	22	47	23	58	31	41
ACAAAATATGCCTCGG	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGTCGAGTTGGGC	alt_1218_fdr	102	154	113	82	174	72	204	71	194	85
CAGTGGTGCATAGGTC	alt_1218_fdr	38	27	47	28	30	41	45	34	35	45
GAAATTCCACATCGGT	alt_1218_fdr	76	48	113	66	64	83	80	61	46	75
AGTCTCGTATCCACCT	alt_1218_fdr	86	67	93	58	57	69	49	65	51	67
GTATACCTCACCCGAT	alt_1218_fdr	59	46	68	41	50	39	61	40	57	41
GGTTAAACATTACACC	alt_1218_fdr	9	2	8	5	5	7	4	6	3	2
ATGATGTAATTGTATT	alt_1218_fdr	146	80	151	109	71	110	85	97	106	117
CCCACTAAGGGCAATA	alt_1218_fdr	57	43	70	60	50	56	54	57	46	47
AGTTTTCTGACTTATA	alt_1218_fdr	31	22	33	36	24	44	24	39	24	40
CTGTAACGTAGCCGCT	alt_1218_fdr	64	44	62	58	40	44	43	52	42	52
TATCCATGTTAAGGCT	alt_1218_fdr	26	13	25	31	18	36	21	19	20	36
GTCTTGTCATGTGCAT	alt_1218_fdr	22	22	36	34	13	21	26	35	22	34
CAATCCTTCTTATGGA	alt_1218_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTGAGTCGGACGC	alt_1218_fdr	56	23	79	51	42	60	44	47	47	45
GCGGCAATCAGCTTGG	alt_1218_fdr	62	40	76	63	50	58	40	68	48	67
GCCATTTTGTTAGGGT	alt_1218_fdr	92	52	135	97	69	89	55	93	57	98
CGTTAAGCCTGAGGCT	alt_158_reverse	26	20	32	29	34	39	35	23	29	19
ATAGGTCCTGTGTCCA	alt_158_reverse	47	58	62	46	82	41	64	51	62	54
CTAAATGCATTCCGCT	alt_158_reverse	16	24	19	15	30	18	26	16	26	19
TGTCCTATATGCGAAG	alt_158_reverse	9	12	17	10	16	12	6	16	13	14
CTCGTTTGTTTTCGGA	alt_158_reverse	27	21	32	18	28	10	23	10	26	19
AGGTCGGCCCCCCTGC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTTTTCGAGGCCT	alt_158_reverse	18	16	15	16	9	4	14	9	10	7
TCTGCTGCTTCAAGTA	alt_158_reverse	144	107	157	125	133	138	142	140	132	125
TTCCGGGTGTCCTGCT	alt_158_reverse	11	14	22	20	19	21	17	16	16	12
GTAATGGAGTTTTTCT	alt_158_reverse	27	20	29	26	11	22	17	22	16	14
TATAGTTCTCCAACCA	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTCCGCCTCTCAA	ref_158_reverse	36	34	45	27	39	39	41	36	40	24
GGCAGCACGACTAATT	alt_158_reverse	14	22	37	18	23	16	22	27	11	20
AAACCTTGTCCCTCTC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTATTTGGGTAGC	alt_158_reverse	182	211	240	165	174	189	219	143	210	153
CTCCGCGTACCATGCT	alt_158_reverse	35	56	42	34	43	27	57	32	52	41
GCGGGAACCTCCATCC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTCACATCATAGT	alt_158_reverse	8	15	14	13	8	15	21	9	23	14
GGTGACCAGATTACAA	alt_158_reverse	37	52	57	46	43	45	42	52	59	26
GTCCCATTACCTAAAT	alt_158_reverse	7	4	4	1	3	4	2	2	5	2
TTGGGCTATTTCTACT	alt_158_reverse	38	38	30	34	36	30	53	34	43	36
CTTCTTCCCGTCTCCC	alt_158_reverse	30	94	68	47	73	42	123	47	113	34
GACTTATAGATCTTAG	alt_158_reverse	2	0	0	1	0	1	1	2	1	1
CTGGTCCAATTTGATC	alt_158_reverse	66	198	85	76	213	62	209	61	248	60
GTTGTCAGTGAAGTAC	alt_158_reverse	34	49	61	37	46	55	49	35	48	58
TGTTATATTGCTCGAC	alt_158_reverse	0	1	0	0	0	2	3	2	1	0
TCCTTAGCGATAAGGC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
AACTCTCCCCATCAAC	alt_158_reverse	0	5	1	1	2	1	3	0	7	2
AATTACAATGGTTTTC	alt_158_reverse	12	26	19	18	16	18	16	24	16	19
GCCAGAGCTGAAAACT	alt_158_reverse	31	30	31	33	36	27	31	27	21	29
ATCGCCTGGGTTTTAC	alt_158_reverse	113	115	131	107	144	119	113	129	157	89
GTCGGTCCCCTTGTTT	alt_158_reverse	11	6	9	9	12	6	5	5	13	12
TAGGCTATTATATCCA	alt_158_reverse	24	29	30	23	28	12	19	34	33	27
CTGACTAATTCGTAGT	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGATCGGGCACAG	alt_158_reverse	8	5	15	12	11	3	2	7	8	5
TTCCGAGCTTTAAAGG	alt_158_reverse	10	16	14	14	9	16	10	12	4	18
TGAAGGCTACGCACTT	alt_158_reverse	15	9	14	5	9	10	7	7	13	11
TGGGTTCAACCTCCAG	alt_158_reverse	20	23	18	9	22	21	24	22	12	20
GATAACAGATCGCTTC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
CGATGTACGGGATTGT	alt_158_reverse	230	333	280	257	315	239	318	234	338	216
TGTCCGAAACCGTTTA	alt_158_reverse	17	14	25	15	19	8	17	17	16	16
GAATGTGAGGACGTAG	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
CATCGGGGGGTACTCA	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTGTCGGATCTAG	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGCCGCGTCATTC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
CACGTGTCAATTGCAG	alt_158_reverse	20	17	24	27	24	21	26	22	22	16
CGTTATTGTTAGTCGT	alt_158_reverse	15	14	24	15	10	9	21	17	17	10
GCCCGTACCTACGAAT	alt_158_reverse	2	9	14	9	11	9	15	11	10	4
TCGATCCCCTTTGTGG	alt_158_reverse	35	29	33	46	24	25	39	28	31	19
CAGTCTAAGATGTTAA	alt_158_reverse	40	33	52	25	41	27	33	55	51	37
TGTATTGCATAGCGCA	alt_158_reverse	66	71	99	73	78	73	67	71	80	92
CGTTACTCATGATGGG	alt_158_reverse	14	15	18	19	8	10	8	13	10	17
ATTGCAAGCAATCAGG	alt_158_reverse	43	33	38	29	23	39	33	34	26	31
CTGACCATTTGACATC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
TATGTTCTGTCGCATC	ref_158_reverse	37	14	26	38	28	15	37	14	26	23
ATACCCGTGCAGGTTC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCCATTTCGAGCT	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
TGGACTACGTCGCGTT	alt_158_reverse	37	36	63	43	47	46	48	34	49	42
TGTGCTGTATGCACTT	alt_158_reverse	49	46	43	46	56	45	44	37	61	45
CACCTCTCACGTTTAG	alt_158_reverse	34	23	31	30	37	31	30	26	36	25
CGTAGTCCCGAGTCGT	alt_158_reverse	4	14	19	16	6	3	9	15	12	12
TCTTCGCTGTCCTGCA	alt_158_reverse	41	21	42	32	30	15	18	21	35	16
TGGTCAGTTCCCTCTA	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTACCAGATAAAT	alt_158_reverse	30	30	34	32	26	24	40	25	36	18
TGTTAGTGATCTGGCT	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTGAGGGTCTATG	alt_158_reverse	213	183	233	196	199	195	216	175	188	209
TATTTCCTGACCGTAT	alt_158_reverse	14	19	20	18	22	19	28	18	20	21
TCCTTTATAGATTCTA	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGTAAACTGGTTG	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
ACTTATTTTCAGGTAG	alt_158_reverse	97	76	104	104	91	96	105	103	94	67
ATTTGAGTGCGAGTAT	alt_158_reverse	19	18	31	19	14	16	17	22	23	18
GCCAGTCTGTAAAGGT	alt_158_reverse	10	27	16	23	22	16	28	11	21	14
GTAGGTCGCAAATTAT	alt_158_reverse	104	80	138	99	71	91	82	98	104	96
GTTTTAACCTTCTGTT	alt_158_reverse	64	45	108	77	72	73	61	73	78	77
ACTCTAGGGGTGCCGC	alt_158_reverse	150	182	195	190	144	143	222	166	162	152
TCGGAAATTCCTGTTT	alt_158_reverse	21	10	23	20	18	19	21	17	33	12
CCAGAGAATTCTGATA	alt_158_reverse	42	69	58	42	57	34	55	41	67	43
TCAATTCGGAAGCTTG	alt_158_reverse	102	79	105	88	89	69	94	81	88	73
AATCGGCCCTCCTTGA	alt_158_reverse	19	16	21	23	8	18	12	18	16	17
CACAAAGAGGTGTCCA	alt_158_reverse	7	8	4	5	9	2	3	6	7	11
TATGCATCACCATTAT	alt_158_reverse	56	55	70	46	61	51	40	57	87	60
GGGGAAGGTAATCTAG	alt_158_reverse	36	30	38	21	30	31	26	43	52	19
CATGCCGCGTACATCA	alt_158_reverse	83	88	105	83	115	75	95	89	76	66
TGAGCCCGCCGAATAA	alt_158_reverse	106	109	130	130	130	86	135	103	122	121
CGTCTCGGCGATGCTT	alt_158_reverse	2	3	3	2	8	0	0	2	1	0
AACCTGGCCCTGCACC	alt_158_reverse	22	16	27	20	22	36	19	24	8	17
CAGTGACAGCTGTTTA	alt_158_reverse	9	8	12	6	9	8	5	3	2	2
CAGTCTTCTTCTGTTA	alt_158_reverse	3	1	4	7	9	6	6	6	3	3
TTCTCGCGTGGAAGGT	alt_158_reverse	11	22	27	23	18	15	18	27	22	16
ATTCCAGTCTGTGCTG	alt_158_reverse	40	38	34	34	37	31	28	20	43	26
GGACTTTTGCTTACGG	alt_158_reverse	21	18	33	25	14	16	19	17	22	17
CCGGATTCTCTTCCAG	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
AATGATTTTCATGTGT	alt_158_reverse	68	76	78	49	66	53	64	54	62	59
GAACTTAGACAGTCAT	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
TCCGACCCGCCTCGGT	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGAGTTAGGTTGC	alt_158_reverse	39	35	40	41	52	36	45	37	33	37
GCATCAGTACGTTTCA	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
ACACGGGTTAGCGATT	alt_158_reverse	228	192	294	233	212	196	247	197	203	214
TTTTGGGCTTTCTTGG	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGCACCACCCGCG	alt_158_reverse	3	2	4	3	1	1	5	1	1	0
GTTGATTTACCGTCAC	alt_158_reverse	17	19	22	7	16	14	18	16	19	24
TTATTTGATAAATTCA	alt_158_reverse	9	7	3	4	6	2	1	5	5	4
CGGTACTAGAAAACAT	alt_158_reverse	29	41	54	44	38	42	38	34	38	29
GGATCGAGCCCCGGAT	alt_158_reverse	70	55	86	54	66	54	50	68	57	44
GCATACGGGATGGGGC	alt_158_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGAATATTTAAAC	alt_158_reverse	11	15	10	8	8	12	11	8	7	13
ACGTGATTAGGTTGCG	ref_1841_reverse	62	78	102	80	92	68	76	62	105	82
CCCGTACTTCTACTCC	ref_1841_reverse	0	2	0	0	0	0	1	0	0	0
AATTCGTCTCCCCGTT	ref_1841_reverse	5	25	6	5	25	3	16	6	20	3
GGTATCGCCTACGTTC	ref_1841_reverse	11	13	22	30	14	14	17	12	17	18
ATGTTGAATAGGCGTG	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
CACCGTAATTTCGAGT	ref_1841_reverse	128	111	127	121	96	98	102	116	100	104
GTTGTTGTTTTATCCA	ref_1841_reverse	190	213	193	174	182	180	189	154	218	145
CATAGTCCCGCGCTCA	ref_1841_reverse	122	132	139	116	140	107	156	88	152	94
GGTGGTCCTAATCCTT	ref_1841_reverse	88	91	140	96	99	70	85	101	83	81
TGGCAACAGACCACCG	ref_1841_reverse	21	17	34	29	25	15	14	26	35	30
GCTCCTGGGTTGCTCG	ref_1841_reverse	13	14	22	17	21	16	28	13	17	15
ATTGATAGAATCGCGT	ref_1841_reverse	62	57	71	37	50	42	50	41	63	44
GGATGACAGCGGAATG	ref_1841_reverse	32	23	23	25	28	34	38	20	29	29
AGGATCGTACGTGGCT	ref_1841_reverse	66	89	143	90	92	99	119	83	112	87
ACTTCCCTCTGTCATT	ref_1841_reverse	18	36	30	20	30	17	25	12	46	12
ACTCCTCAATCCGTGT	ref_1841_reverse	13	23	25	21	20	22	36	23	26	16
GCGGTGAGTTTGGGGA	ref_1841_reverse	33	35	30	33	20	30	20	28	32	27
CTGGCCCCTTCTACCG	ref_1841_reverse	64	59	86	72	77	52	65	55	87	64
GGAGTCCTGATCCCTA	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
GCTATCTCGCTTTGAG	ref_1841_reverse	46	31	54	36	34	25	34	36	57	28
ACTTACACTTTGCGCT	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTGGTTCGTGCTT	ref_1841_reverse	46	60	36	46	44	37	53	35	59	46
GATACACTCATCAGTA	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTCTGTAGTGGTA	ref_1841_reverse	52	64	38	56	59	45	54	32	63	44
TTAACTATGACAGCAT	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
TTTTACTTGCACTTGT	ref_1841_reverse	17	23	23	21	29	12	15	16	26	16
TATACCGCTCTGACAC	ref_1841_reverse	0	1	0	0	0	1	0	0	0	1
TTGAATCAAAGCTTTA	ref_1841_reverse	57	79	61	65	51	65	73	45	79	55
GAATCTATTCATATAG	alt_1841_reverse	22	25	22	13	24	16	26	13	19	18
GTACTGTCCCCTCACT	ref_1841_reverse	30	36	26	23	34	23	38	17	35	19
CCTGATCTTGGCAGGT	ref_1841_reverse	0	2	0	7	2	0	0	2	3	2
CCAACCTCCTTTGCGT	ref_1841_reverse	20	100	18	18	87	14	97	14	98	15
TCGTTGTAGACAATCA	ref_1841_reverse	32	13	33	16	7	18	21	11	22	17
CTCTGCTCTACGTTAT	ref_1841_reverse	34	30	26	24	32	24	43	24	40	23
AAAGTTCATTCTCGCG	ref_1841_reverse	7	7	7	5	7	7	8	4	8	3
CCCCACCAATCTTTTT	alt_1841_reverse	14	29	20	14	28	11	20	12	24	13
GCTCACGTTACATAAT	ref_1841_reverse	39	59	49	41	57	54	58	40	40	43
CCCGCACTTGTACAGT	ref_1841_reverse	9	13	9	6	6	7	13	4	9	13
CTTGTCGGTAAGGCAC	ref_1841_reverse	46	43	55	42	37	43	47	36	57	51
ATGTCCCGCCCCCACA	ref_1841_reverse	52	47	51	50	47	44	59	49	57	51
AGACGCGCGCGGGAAC	ref_1841_reverse	37	38	47	49	38	35	44	46	45	36
CTGATGTCTTTCAACT	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
TAAATATTGTACTAGC	ref_1841_reverse	57	61	69	63	63	72	59	58	61	63
CCGACCTAGCTGTAAA	ref_1841_reverse	28	43	38	16	37	26	39	21	40	28
CTGAAGCTCCATTGCT	ref_1841_reverse	46	30	34	18	37	18	35	24	28	34
AGCAAGTTGTATTACA	ref_1841_reverse	38	35	40	32	35	23	40	31	34	29
CCAAGGGACCCCCCAC	ref_1841_reverse	3	2	1	3	0	3	2	0	1	3
TCTACTTGCCTTCGCT	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGCCTTCAGGATC	ref_1841_reverse	169	195	181	143	217	139	201	140	230	123
GTTCACAACACTGCGA	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
CGCTCACGAACAATTG	ref_1841_reverse	24	12	15	13	7	9	11	15	12	9
CCTTAGAGTTCGGCTT	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCGACCGAACTGA	ref_1841_reverse	83	106	108	100	107	82	110	94	111	73
CGCGCGATTGTCTCTA	ref_1841_reverse	44	63	74	55	52	66	64	37	63	67
TGTTGCTCTTGTGTTC	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
GACTGCCATGCTGCCT	ref_1841_reverse	19	9	13	16	10	18	12	6	19	16
AAGTCTTATCGGTTTA	ref_1841_reverse	56	86	75	61	67	53	68	52	91	59
TGGCCTCGCTGTCCTG	ref_1841_reverse	50	43	79	50	51	57	57	36	35	53
ATCTTTCGCTGAAGGG	ref_1841_reverse	275	306	320	296	292	279	311	283	295	263
TTACTAACTTGCAAAG	ref_1841_reverse	383	423	474	372	393	338	453	338	434	315
ATCAGCATGCGTCAGA	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
ACGAACATTAATGGTA	ref_1841_reverse	15	20	21	21	22	18	16	20	23	11
TTTGGCCGTAGCTTAC	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
TTAATAGGCCCACCAG	ref_1841_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGCTCCTGGCGCC	ref_5643_new	50	75	69	40	74	52	67	47	57	34
CCTTATCCGGGCACTC	ref_5643_new	105	125	111	92	111	113	124	69	116	84
GCGTCTGGCTGATCTC	ref_5643_new	69	99	76	76	79	79	79	64	95	72
CCGCTTCGCCGGCGGT	ref_5643_new	53	70	51	52	52	29	68	46	59	35
CTCATTTCGCTTACGC	ref_5643_new	13	12	14	21	15	14	14	18	12	8
GCGTTTATGCCGATCA	ref_5643_new	5	7	11	6	3	10	11	7	7	5
TTATCACTGAATTCGT	ref_5643_new	86	79	107	77	108	77	103	71	81	75
GAGTATCTTTGGGGTA	ref_5643_new	81	86	106	80	105	64	105	75	108	67
GACTGTGTCTGGTTGT	ref_5643_new	6	16	5	2	6	3	14	12	14	4
AGGTCATCGGGCTTTC	ref_5643_new	0	0	0	0	0	0	0	0	0	0
TCGAGAGATTGGTTTC	ref_5643_new	0	0	0	0	0	0	0	0	0	0
TGGGTACAACACTGTG	ref_5643_new	145	193	170	121	199	130	161	112	230	124
CTTCATGCTTCTTACA	ref_5643_new	18	14	24	21	14	17	18	27	26	14
TTGAGTACACTTTCGC	ref_5643_new	13	30	20	12	24	4	19	18	16	11
TACACGATGTTCACGT	ref_5643_new	10	7	5	10	12	6	15	11	6	7
GAGTATTCTAAAGGAT	ref_5643_new	2	1	2	5	1	2	4	0	3	0
ACCCTTTATAGCCTTA	ref_5643_new	31	23	38	29	26	14	24	20	28	34
CAGGACGCTCTCATAG	ref_5643_new	0	0	0	0	0	0	0	0	0	0
CACGTTAGTCCGGTCC	ref_5643_new	0	0	0	0	0	0	0	0	0	0
CGGGTCACGCTACACA	ref_5643_new	85	82	129	107	95	77	93	91	110	84
TCATCTAGCCGGGATA	ref_5643_new	0	0	0	0	0	0	0	0	0	0
CCCGTTCGTTCCCCAC	ref_5643_new	33	50	54	36	77	44	42	40	55	41
GTTCACCGGGCATCGT	alt_5643_new	0	0	0	0	0	0	0	0	0	0
TTGTTTCGCGCTCAAA	ref_5643_new	27	37	38	19	21	21	23	21	27	15
AAATAGGTCTGACTTC	ref_5643_new	50	47	55	63	40	54	37	54	66	42
AAAGCGGTAGCGAAGT	ref_5643_new	44	71	50	45	64	38	54	36	73	58
CTACAATACGTCAGTG	ref_5643_new	61	90	88	70	107	47	92	55	104	72
TTGAGCGTTTCTTTGG	ref_5643_new	0	0	0	0	0	0	0	0	0	0
CGCAACCTTTATCGTA	ref_5643_new	0	0	0	0	0	0	0	0	0	0
AACAAAATCAGTTCGT	ref_5643_new	21	21	20	17	33	14	28	21	21	18
AAGTCCTTACGAAGGC	ref_5643_new	56	98	97	75	73	58	85	54	80	66
GTCCACCTGAGAAACC	ref_5643_new	26	26	20	21	27	28	25	24	12	14
ACGACTTCTGGCTTTA	alt_5643_new	114	111	134	104	110	91	124	94	117	106
CGACACTGATGAATTG	ref_5643_new	73	76	87	80	72	68	67	54	79	60
GCAAGAGGCGTAGCCC	ref_5643_new	105	116	103	112	115	84	100	104	104	89
CGGCTAGTTTGATCCA	ref_5643_new	0	0	0	0	0	0	0	0	0	0
CAAACCGATTGCACTG	ref_5643_new	79	78	64	68	74	51	94	63	86	53
GGGGTTGATCTGCACA	ref_5643_new	0	7	1	3	5	4	4	1	3	0
CTGGTGCTCAGAATTC	ref_5643_new	19	22	24	21	35	21	38	15	31	16
TACTACCGTGTGCTAC	ref_5643_new	0	0	0	0	0	0	0	0	0	0
GTAATTACGCTTTTGG	ref_5643_new	24	21	19	23	21	18	20	18	28	18
ACTGTTGGCAAATAAT	ref_5643_new	1	6	6	2	0	1	4	3	7	0
CGAAATATTGCAAGTA	ref_5643_new	22	21	31	29	25	19	29	20	36	23
GCTACACATCCTTCGT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TCAATAGGAGGGCCCG	ref_2950_upstream	33	50	49	47	39	49	40	33	37	46
CACTTTGCCTAACTTA	ref_2950_upstream	13	13	12	16	14	14	24	16	18	9
TGAAATACACCTTAGT	ref_2950_upstream	38	45	65	48	32	46	47	40	39	38
GGTTCCTCCCCACGTC	ref_2950_upstream	11	31	14	19	17	11	31	16	27	14
AGGTAGTCCAAAATTT	ref_2950_upstream	22	17	37	25	17	22	15	23	19	14
ACTGTAACGGATTTTT	alt_5706_new	44	21	38	30	29	27	18	27	23	31
CCGTACTACCTCTCTT	ref_2950_upstream	3	8	8	6	13	3	5	10	8	7
AGAATCACGCATTTGC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGGAATCACTTCT	ref_2950_upstream	28	21	35	29	24	23	20	30	30	32
ATGCTTGATTCTGGCT	ref_2950_upstream	7	7	9	16	3	8	9	2	3	3
GCACGTGTCTACACTC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTTACCCATAGGA	ref_2950_upstream	25	11	25	22	28	15	14	25	22	23
CGTCGGCCACCTTCAT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTTGCATACGCAT	ref_2950_upstream	24	13	25	16	22	15	15	23	19	24
TCATCGGTTCAAAGCT	ref_2950_upstream	32	18	50	29	28	34	27	31	22	33
TAAGTAGTGCCTCCAC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGATCGTCACGTATAT	ref_2950_upstream	9	6	14	13	6	17	13	9	4	12
CTCAGGCTTGCGCTCG	ref_2950_upstream	18	27	40	19	25	23	46	12	37	16
CGTGTCTTTACGCTTC	ref_2950_upstream	155	131	178	146	123	143	124	149	134	149
TCCTACAAGCGTACAC	ref_2950_upstream	20	14	33	21	18	15	25	16	16	20
CTTTTATGGAGCACTT	ref_2950_upstream	42	35	64	49	33	51	47	48	46	28
GCGGACGAGTACTTTC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GCAGGGAGGAAGAGAT	ref_2950_upstream	3	11	11	9	8	12	10	9	16	11
TCTCTAACCTTCTCGG	ref_2950_upstream	1	0	5	0	1	0	1	1	3	2
CTCTGCCAGACGTTGA	ref_2950_upstream	21	30	34	34	32	26	33	35	49	37
CCGTGTATCAATACTG	ref_2950_upstream	12	16	32	21	16	24	17	12	8	15
TAGATCACTATTGGTA	ref_2950_upstream	36	26	48	32	30	21	29	24	31	23
GCACCCAATTTTTCCT	ref_2950_upstream	107	88	124	117	84	103	81	104	85	89
ACCGAATCTCCCGGTT	ref_2950_upstream	14	5	16	8	11	15	12	15	8	15
TCCCAGCGTGCTGTTC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGTAAAAATTACAATT	ref_2950_upstream	41	37	41	39	27	44	31	53	39	30
GTGACGTGCCTGCTTC	ref_2950_upstream	70	64	78	76	60	67	70	70	68	69
CAGAATGCCCTGCTGA	ref_2950_upstream	34	44	48	45	30	28	36	31	36	41
GTATGCCTGCTTGATG	ref_2950_upstream	12	12	15	14	11	17	11	13	8	12
AGAAGTTTAGCTAATG	ref_2950_upstream	5	6	13	10	8	8	3	3	12	9
TTTTGTGTCCCGTGAC	ref_2950_upstream	12	12	20	12	9	12	15	14	12	17
CGTGTTGATTAGGCGC	ref_2950_upstream	17	13	28	23	26	28	18	27	17	37
ACGATAGATATTTGAC	ref_2950_upstream	26	23	30	28	17	27	33	22	22	29
TGGACTATCGCATTTC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGTAATCGTGTTACAA	ref_2950_upstream	43	27	53	47	40	38	48	50	43	56
ATGTGAAACGCTTGCA	ref_2950_upstream	48	46	49	64	53	73	47	53	59	50
TTCTTCTGGATTTCCG	ref_2950_upstream	16	20	32	16	13	33	20	20	24	14
CTGTAGGGCAATTCTT	ref_2950_upstream	35	36	56	33	29	49	37	45	33	26
TTATCCACTTGAGTAG	ref_2950_upstream	11	10	20	21	14	13	9	6	11	15
TATCTCGAGTAGGATT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TCACTCGATTCAACCG	ref_2950_upstream	39	76	31	34	75	24	76	29	73	22
CTTGAACAAGGGTGTG	ref_2950_upstream	16	15	8	5	6	2	9	5	5	7
TAATTTCCGGGCTTTT	ref_2950_upstream	2	1	0	4	0	2	5	1	2	1
GCTCGTCCCCTTAGTG	ref_2950_upstream	22	52	21	15	41	15	46	9	43	19
ACTGGTCTAGAGAGAT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTAGGATACAATC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GCAGACATCGCGTAGC	ref_2950_upstream	11	17	13	15	23	11	13	12	12	5
GTGGGGGGTCTCCGGC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCATATAATTATG	ref_2950_upstream	65	39	63	72	38	40	61	52	48	45
TTTGTTTCCCAAGTTG	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGATTATCGTAGC	ref_2950_upstream	84	85	89	99	77	83	70	92	68	80
TATGCCACTCAGGGTG	ref_2950_upstream	11	5	11	7	11	11	11	6	7	4
ACTTCCATTTACGATT	ref_2950_upstream	21	19	28	15	16	10	13	25	18	13
GAGGCTGCACCGGTAG	ref_2950_upstream	232	186	263	220	215	214	202	200	201	176
CAGGCAGCGCCCTTGT	ref_2950_upstream	21	20	30	28	25	27	15	29	19	39
GTGATCAATAAGCCGG	ref_2950_upstream	49	48	70	53	50	61	72	63	69	60
GGACTTTGTTCCTTGT	ref_2950_upstream	73	67	77	67	57	73	63	69	50	64
AGTCTACCCGCCTTGG	ref_2950_upstream	5	4	3	1	6	7	3	1	3	5
TCCACACTTAAGGAGT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTCGGAATACATC	ref_2950_upstream	5	4	6	6	5	7	3	5	8	2
CCCCAATGTTCCTGCT	ref_2950_upstream	105	54	136	79	63	79	65	74	57	79
AGGGAACACTTTTGAA	ref_2950_upstream	32	31	39	41	24	30	19	41	39	25
TTGTGATCGCCGTGAC	ref_2950_upstream	6	7	16	13	6	3	8	7	7	3
GTGGACGATTAAACAC	ref_2950_upstream	19	5	19	8	15	11	9	15	9	11
CGAGGTCGTTTTCAGG	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
ATGGAGACCCGAGTCG	ref_2950_upstream	43	31	41	34	38	42	26	42	45	27
GGTAAATGTGGTAGCG	ref_2950_upstream	11	14	15	10	2	15	14	7	8	13
CGCCGTAGGGTGTGGA	ref_2950_upstream	46	53	68	46	77	57	46	50	47	49
GGAGTTATGCAGTTAT	ref_2950_upstream	62	41	75	52	60	54	60	76	52	56
CGCAAATGGTAGAAGA	ref_2950_upstream	14	9	16	10	7	15	8	10	5	17
TCAGCTCAATAGGCCC	ref_2950_upstream	1	7	8	8	2	1	5	12	13	4
TACATGGGCACTGCAA	ref_2950_upstream	128	41	145	138	47	139	45	124	68	122
GTTCGGAGTTATTACT	ref_2950_upstream	72	56	89	78	48	63	48	56	72	68
GGCATCGCCAGTCCGT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
AAGCGCACGGTGGACT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTTCGACGACGTA	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TCGAAATTCGTACGCC	ref_2950_upstream	26	22	28	27	10	25	30	18	16	12
TTTCGGTTGTCCAAAC	ref_2950_upstream	12	6	8	13	4	8	7	6	4	1
ACAGGACTAGATCTGG	ref_2950_upstream	35	24	41	43	32	35	29	66	27	33
TATTTCCTATGTCAGC	ref_2950_upstream	19	13	24	13	16	16	24	18	14	16
TTTTCGTATCTACTAA	ref_2950_upstream	38	23	41	42	18	33	18	21	41	23
TTTGATGAGCTCCAAG	ref_2950_upstream	55	31	64	53	31	40	45	37	42	51
CCTCGGCGCTGTTTGT	ref_2950_upstream	53	49	61	46	51	49	64	48	47	50
GGTTTTACGTTACTCT	ref_2950_upstream	41	28	44	22	39	37	39	41	39	25
ATCCTACGATTAGTTA	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTATGTGCCGAAG	ref_2950_upstream	12	8	9	6	9	20	12	10	7	7
AAATACCCATCAGACT	ref_2950_upstream	3	1	8	1	10	4	5	6	5	5
ACGGGTGGCGCGCAGC	ref_2950_upstream	27	29	27	28	15	9	17	14	22	11
ATAATTTTGGTTCGCC	ref_2950_upstream	21	27	29	20	30	22	31	25	23	22
TATACTGAGGTGCATG	ref_2950_upstream	49	37	58	53	49	59	49	52	43	40
TGTGGTCTCCCCTTTC	ref_2950_upstream	8	15	10	4	12	8	11	16	12	7
GGCAACACGATACCAT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTGGCCAAACTCG	ref_2950_upstream	13	13	21	8	8	17	10	14	12	12
CCTCGCGACCGCCGTG	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTCTCGAGTGCTC	ref_2950_upstream	33	33	27	36	38	28	27	26	37	26
ACACTTTTCGTAAGCA	ref_2950_upstream	44	35	62	53	41	46	42	34	41	45
ACCGGCATTAGTATCC	ref_2950_upstream	35	42	46	52	38	30	33	41	42	28
GAATTGTGGCTTCACA	ref_2950_upstream	3	6	10	10	7	3	4	4	12	3
ACCTAATTTGGATCCA	ref_2950_upstream	163	156	190	186	140	145	147	166	157	117
GCTGATCGTTGGTTCG	ref_2950_upstream	10	9	11	12	2	8	14	9	9	10
GAATGCGCTCCCGGAC	ref_2950_upstream	30	62	35	33	57	17	57	39	53	24
ACCATTTCCCACATTC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTGTACGAGGATG	ref_2950_upstream	46	51	81	53	44	50	62	48	51	47
ACCTTCGTTAACAATG	ref_2950_upstream	23	25	32	22	24	27	14	27	23	31
CTGTTATCTACTTGTT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCGTACCGGCAT	ref_2950_upstream	1	1	4	0	2	4	3	4	2	3
GCCGAGCTGTCAAAGT	ref_2950_upstream	17	11	23	19	21	16	15	25	14	15
ACGCATCTACCTATTC	ref_2950_upstream	16	13	13	12	10	6	11	11	14	10
GCAAGCAATTGCATAA	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TGCGATCTCCCTGCTG	ref_2950_upstream	15	14	24	17	14	15	13	23	27	15
GTACTTGCTCGTAATT	ref_2950_upstream	18	20	29	23	29	29	17	20	21	28
TGCGCGGATTGCTTTG	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TAATCAGCAGATTTAG	ref_2950_upstream	90	78	112	122	76	110	91	100	96	89
TAAGTTATTGCTTTCC	ref_2950_upstream	34	37	42	45	24	32	24	31	24	43
GCCCGCTCGAGGCTTT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGTCGCTTCGGTA	ref_2950_upstream	29	34	45	38	27	36	30	40	28	29
GTTTCACGGGATATCA	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTGTTATTACAT	ref_2950_upstream	7	13	14	11	6	16	13	9	13	10
ATGCTTACGGTTCTCT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
CTCACGCTCCACAGTT	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGTGGAGTCCGAT	ref_2950_upstream	28	14	44	26	27	28	27	17	19	17
GCATATAACAAGTTTC	ref_2950_upstream	32	29	30	21	26	35	25	26	35	32
CCCGGTCATATCAGTT	ref_2950_upstream	3	5	3	0	4	0	2	7	5	1
TGGGCCTTGAGGTGTA	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
GAATCTCAATCAGCTG	ref_2950_upstream	3	1	1	0	0	3	0	0	0	4
TTGGATCCACTTGTTT	ref_2950_upstream	27	13	17	16	19	16	19	27	15	24
GCTAGTTACTTGGATC	ref_2950_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTGCCCAATTGTT	ref_5867_new	23	29	18	20	37	20	22	16	35	15
TACGCAGTAGTGGCAG	ref_5867_new	40	57	43	33	56	30	65	19	46	34
TACATCGTAGCCTGAC	ref_5867_new	0	0	0	0	0	0	0	0	0	0
TCCCTGATTTCCCGCA	ref_5867_new	18	35	27	20	46	25	46	23	31	32
CTCCAATCTATCGCGG	ref_5867_new	8	9	8	7	11	12	4	8	8	7
AATGTTTTTAGTTCTT	ref_5867_new	25	21	23	23	31	29	37	31	30	12
ACGCCACAGTTGTCCA	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GCCGACGGCCGTCACT	ref_5867_new	59	79	70	50	78	46	95	62	87	63
GTTGGCCGTCTAGTGT	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GTTATTCGCGCCACTG	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GCACCTATAGCTTTAA	ref_5867_new	26	35	32	19	42	33	35	18	52	21
TCTAGAGTCCACTGTG	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GCATGAACAGCGTTGG	ref_5867_new	86	122	100	70	131	93	131	87	153	83
TGCGTCCACTTCCCTA	ref_5867_new	0	0	0	0	0	0	0	0	0	0
CTACCTAATTAGCTCG	ref_5867_new	20	26	26	20	31	35	34	25	31	21
TTATCCATCCGAGAGG	ref_5867_new	32	34	25	22	27	33	36	33	37	31
ACGCTTTCCAACCTCA	ref_5867_new	0	0	0	0	0	0	0	0	0	0
CACGTTCCACCCGGTG	ref_5867_new	29	44	27	16	60	25	55	29	52	27
GTGGTCTATTTGCTCC	ref_5867_new	14	17	28	34	25	14	28	14	26	14
GTATCAACCGTGATTA	ref_5867_new	12	7	11	10	12	10	8	4	15	1
TAGTTGGAAAGTCCAT	ref_5867_new	0	0	0	0	0	0	0	0	0	0
TGGTATCCACTTGGGT	ref_5867_new	44	96	63	51	73	59	91	57	94	45
TGCTTTTACTCTCTGC	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GCCCACGGGGAGCAGA	ref_5867_new	2	9	3	4	5	1	5	2	6	2
TTCAGCAGCGTGGCTA	ref_5867_new	0	0	0	0	0	0	0	0	0	0
CTGTGCCCGGAAGTGC	ref_5867_new	15	24	22	25	28	23	24	17	25	14
GCTCGGGTAGCCTTCG	ref_5867_new	2	7	8	6	9	0	6	9	10	3
TCGACGCAGTGTCCGA	ref_5867_new	37	54	38	43	55	33	62	44	37	35
TTGTTCGGCGAGGAAT	ref_5867_new	0	0	0	0	0	0	0	0	0	0
CTCCCGTCGCATCAGC	ref_5867_new	0	0	0	0	0	0	0	0	0	0
ATGAAATCTCTCTGGA	ref_5867_new	73	73	92	86	93	60	75	67	77	50
CTGCGTCCAGCTGACC	ref_5867_new	0	0	0	0	0	0	0	0	0	0
TTGTCGTGTTGATGAA	ref_5867_new	17	15	22	13	25	19	22	14	30	11
TAACGACCAAAGTCTT	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GCGTTTCCACATCGTG	ref_5867_new	13	17	7	14	21	11	24	3	25	6
GTTTTCCCATGTATTT	ref_5867_new	8	2	6	3	7	0	3	5	4	6
GTCTTTATGAGTCAAA	ref_5867_new	0	0	0	0	0	0	0	0	0	0
CGTACGTTGGTTCTCG	ref_5867_new	0	0	0	0	0	0	0	0	0	0
TACCTGGCCAACGCCG	ref_5867_new	9	12	10	15	21	12	23	13	25	10
AACTGACTTGCACATA	ref_5867_new	61	127	104	71	147	84	120	67	134	65
TTACATACGTTAACAG	ref_5867_new	29	23	18	21	30	14	19	18	26	12
GACAAGAATATGTCTT	ref_5867_new	104	146	98	93	184	79	146	74	144	100
TTCATATGTTAACCAT	ref_5867_new	9	14	4	8	9	10	14	6	6	2
ACTAGATGCCAGATTG	ref_5867_new	298	363	320	285	449	237	448	242	418	217
ATCGCTCATAATGAAT	ref_5867_new	10	19	13	14	15	13	15	7	8	6
ATCCGGCTCACATAGC	ref_5867_new	0	0	0	0	0	0	0	0	0	0
ATTCGAACGTTTCTAC	ref_5867_new	7	13	15	11	12	6	23	5	6	7
TGTCAAATGAAATTTA	ref_5867_new	23	26	27	19	19	22	26	12	28	21
GACCCCTTTATGGGTT	ref_5867_new	56	64	62	45	68	58	59	47	66	45
ATGAGTCCGGGTCTAA	ref_5867_new	8	11	4	3	10	13	12	5	16	13
GTAGGCCCCTGTTCAC	ref_5867_new	54	59	51	43	61	43	69	44	60	41
CTTTTCGATCTCTTTT	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GGAGCATCTCCTTAGA	ref_5867_new	72	112	102	81	101	60	101	79	98	85
GTCATGTCATTAGGTT	ref_5867_new	0	0	0	0	0	0	0	0	0	0
GGGGCGAGGTCTCAGG	ref_5867_new	68	90	76	39	98	43	91	60	88	52
TGTAGTATCAGCAAAC	ref_5867_new	3	10	6	6	8	5	7	3	6	2
ATACTTTGGTCTCGGT	ref_5867_new	7	17	15	7	17	15	18	7	16	15
TATTGTTTTCTCGCCC	ref_5867_new	58	78	73	64	86	66	87	45	93	48
GTCTCTAGGCTATTTT	ref_2246_missing	21	30	23	22	26	23	33	15	32	16
TATTCTTCTGGCTCGT	ref_2246_missing	22	39	30	32	28	21	24	39	31	22
TTCTGGCCCGCACCCA	ref_2246_missing	6	7	5	7	5	8	1	2	10	8
ATGTTCTTAAGCATTT	ref_2246_missing	39	38	28	26	36	35	41	29	43	29
GACTTTGCCCGAGTTA	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TGCGCACAGTTGGCGC	ref_2246_missing	2	1	0	4	0	0	8	3	5	1
TGGTGAAGGCCCATCT	ref_2246_missing	59	100	86	62	75	44	98	60	93	61
GACAGGCTCCGATCCC	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
GCCTCCTATTATCTCG	ref_2246_missing	18	69	27	20	50	28	56	24	41	24
AGTCCTTGACGTTCCG	ref_2246_missing	5	8	0	2	10	4	9	6	13	6
AGAAGGTGGAGACCGA	ref_2246_missing	3	5	5	9	8	5	11	6	7	4
GTTATCGACATTGGGT	ref_2246_missing	71	76	81	48	90	66	99	58	91	48
TCTAAGAACTTTCTCG	ref_2246_missing	4	13	3	9	15	8	11	5	12	8
CATGTTTTTCCTACTG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TCGCTCGATGGTAGAT	ref_2246_missing	48	57	58	27	62	43	63	32	52	33
AGAGCCGATAATCTCG	ref_2246_missing	80	110	89	82	137	69	100	53	119	69
CAATGGTGCTATCTAA	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TTACAAATACGGGAAC	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TCGGATGAGGGACGGC	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
GGAATGATCTTTCCAT	ref_2246_missing	16	21	18	13	22	14	18	12	21	8
TATCCGCGCTGTGTTT	ref_2246_missing	44	76	53	42	60	49	44	40	64	42
CTGTCGCTTATTAACA	ref_2246_missing	20	36	22	17	39	21	22	15	30	16
ATCAGGATTTTTCTTC	ref_2246_missing	44	60	43	42	54	40	44	41	56	31
AATTTCACCTGGTATG	ref_2246_missing	30	72	27	28	50	39	48	39	59	27
GAATTGGTAAGTAGTA	ref_2246_missing	38	50	70	46	59	54	54	38	67	52
ACGTCTGGGAGCCCCT	ref_2246_missing	64	98	58	58	73	51	74	66	116	49
GAATCGTTTTTTATCG	ref_2246_missing	0	4	2	1	1	2	1	0	2	0
TCTCCCTTTTTTCCAA	ref_2246_missing	86	143	88	85	135	58	147	66	172	90
ATTTTCAGGCCAGCAA	ref_2246_missing	1	4	3	2	3	1	4	3	5	2
ATTACGCGGTTACTTA	ref_2246_missing	4	2	6	9	11	4	4	1	9	3
TGTGTGCCAGCCCCCA	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TCATTCGGCTTCCAAG	ref_2246_missing	8	9	13	13	8	4	4	6	12	3
CGTGTATGCGCATCAT	ref_2246_missing	7	9	5	4	11	4	9	4	11	4
CTGTCAGTGTGTTTTG	ref_2246_missing	7	28	10	11	21	11	28	12	21	9
CCGTCTCGGAAACTGA	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TTTGGTCATTGCATGT	ref_2246_missing	10	23	14	9	28	8	27	18	17	8
GTATCCTTACGTTACG	ref_2246_missing	7	19	16	15	23	16	23	8	23	6
TCTATGTTAGGTCACT	ref_2246_missing	60	65	73	33	54	38	75	32	80	31
GGATTCGACCGTCCAA	ref_2246_missing	1	1	0	0	0	0	1	4	1	1
AGGGTCGCCGGTGGCT	ref_2246_missing	26	36	17	18	24	32	53	17	35	28
ATGAGTTTGGTTATCT	ref_2246_missing	16	21	16	19	21	19	25	16	30	19
CTGCGCACAGTGGTAA	ref_2246_missing	10	16	4	6	11	7	16	12	13	4
AAACATCACGTCGTGA	ref_2246_missing	21	20	20	19	20	16	16	21	28	11
TAAAGTTGTGAGTGCG	ref_2246_missing	15	16	20	17	24	12	36	12	24	19
AATTCGGCACCTTTGA	ref_2246_missing	6	6	4	2	8	6	12	1	4	5
TTCTCAAACTCATATT	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
ATGATACCTGACCACG	ref_2246_missing	1	3	3	0	5	1	4	1	6	4
GTTTACACTTCCCGTA	ref_2246_missing	0	2	0	1	0	0	3	0	1	0
TAGATTACTCCTGAGT	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
CAAATGTTCTTTGGAG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
ATCCAAAACCAGCAGA	ref_2246_missing	7	15	20	13	17	10	20	15	22	8
CTTATATAATATTCAT	ref_2246_missing	18	41	37	16	44	27	32	15	37	30
GAATTAATATTTTCAG	ref_2246_missing	5	4	3	2	10	5	8	4	3	4
GAGTCCACTTTTAACA	ref_2246_missing	7	7	10	12	19	8	15	12	15	11
ATTCTTGGGGGCACAG	ref_2246_missing	18	23	20	18	39	16	29	10	29	25
TTTCAAGATACAATTC	ref_2246_missing	44	57	59	54	60	33	73	38	57	45
TTACCCCTGTGGAGTT	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TTTATCTGTACTCAAG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
GGTCTGCAAGTCTCGT	ref_2246_missing	24	34	38	23	48	18	34	25	33	13
CCCCACGCGAAGCCCT	ref_2246_missing	29	33	34	26	43	25	33	21	47	30
ATCTTACTCTGTTTCT	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
GAAACTTACGTGTATG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
GCCTAGGATGTAGACG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TATCGCCGTGGTTCCT	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TCGATCTCTCGCCAAG	ref_2246_missing	46	99	82	63	94	52	85	67	108	69
CTCCTAGCCTCACCGT	ref_2246_missing	19	60	19	27	71	18	68	17	79	15
TAATTCGTAGTTACAT	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
ATTGACTTGCCACGTC	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
TCTTGGATGTTCCTCC	ref_2246_missing	11	13	14	11	16	5	21	9	20	5
TCTGATTGCCCGCGTA	ref_2246_missing	10	5	11	0	10	13	9	7	9	4
TGACGCCAAACTCGAA	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
ACGATCTTCTCTCAGG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
CTCGTCCCTCTGCGAC	ref_2246_missing	0	6	5	0	5	5	5	2	5	3
TACCATAACCAGAAAC	ref_2246_missing	27	53	24	34	61	22	49	30	48	19
CCGGATAAATCTCTGG	ref_2246_missing	10	17	10	19	29	21	22	13	27	10
TAAACAAAACTGATTT	ref_2246_missing	18	21	27	26	34	18	15	20	28	21
GCGGAGTTCTGATACG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
AGACCGGTAATAGAGG	ref_2246_missing	61	119	99	65	129	64	125	46	126	55
TAATTTCGGGAATGTT	ref_2246_missing	13	7	18	12	10	12	24	14	22	13
TGTGTGCCAGACCCCA	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
GTTTCGTACACTGTGG	ref_2246_missing	0	0	0	0	0	0	0	0	0	0
GCGGAATAGCGGGATG	ref_2246_missing	18	35	11	23	17	20	26	21	32	21
GCACGCAAATTCTATT	ref_2246_missing	80	104	69	69	122	71	145	82	131	82
CGTATTACGCAAGCCT	ref_2246_missing	5	11	3	6	2	5	11	3	4	3
GCGCTTTGTCGGGCAC	ref_2246_missing	17	28	28	16	36	18	30	21	31	14
GCCCTGTGCAGGCTGT	ref_2246_missing	8	2	7	2	13	8	13	7	8	0
CTGGCGAAAAATAAGG	ref_2246_missing	78	105	104	85	108	83	102	80	99	76
AGAGTAGCAGAGGACG	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTGGCTTGAGGC	alt_4372_RC	16	17	3	15	19	13	18	9	18	7
CCTAATGCATGTGAAG	alt_4372_RC	17	35	14	24	27	13	29	12	32	13
CCTCTTCGTTGCTACA	alt_4372_RC	12	17	8	23	21	12	30	11	17	9
TATTTATTTAACATTT	alt_4372_RC	74	120	83	75	78	70	112	44	115	63
GGCTCGAACTTCGTCC	alt_4372_RC	37	67	45	51	77	38	81	39	67	41
TCAAGTCTACCTGAAT	alt_4372_RC	3	9	1	2	8	2	6	5	7	8
AAGAGTTTTTTATGTC	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTTATGTACACC	ref_4372_RC	38	115	42	45	105	46	116	45	111	39
TAAGTCCACTTCCCCA	alt_4372_RC	3	22	1	0	27	2	16	3	19	2
CCCTCTACAGTAACTG	alt_4372_RC	0	3	2	0	9	0	5	3	7	3
TCATATACGCCCACTC	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CCGTTGGCGACGTATC	alt_4372_RC	9	17	5	5	15	7	12	4	10	4
TCCATCAGAGTAACAT	alt_4372_RC	15	54	49	30	52	24	69	26	64	19
TGATACGAACTCACGA	alt_4372_RC	2	0	0	1	1	1	5	2	2	0
GGTTCTATGGAAGGTG	alt_4372_RC	14	19	12	12	22	9	30	8	15	3
TGGAGCCTAAGATTAG	alt_4372_RC	6	26	13	8	17	16	22	19	22	9
TACGGGCGCCAATTTT	alt_4372_RC	51	102	60	49	95	54	98	53	94	40
CAGGGTCTGCGTACGC	alt_4372_RC	33	55	39	26	51	23	56	24	49	23
AGTCGCACGGGTTAGT	alt_4372_RC	9	23	10	10	25	11	17	7	18	12
AGTTTCCACACACTTT	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CTTGGCGCGTGGTGTC	alt_4372_RC	6	9	6	7	18	9	11	9	13	6
CCGCTAGAGCTGTTAT	alt_4372_RC	5	6	6	3	4	1	10	3	10	5
ATTGGTAATCACGACA	alt_4372_RC	6	15	8	6	7	8	9	4	9	4
AGCAGCATGAGCAACT	alt_4372_RC	17	24	10	10	30	14	27	12	23	19
ACGCCAAGGGGCTGGC	alt_4372_RC	8	15	15	13	17	8	19	10	32	13
GCTAACGTACCGGCTT	alt_4372_RC	0	2	3	4	5	3	7	2	7	1
CCTCTCTGCAAGGCTC	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CCCTCGCTAAGAGTTA	alt_4372_RC	20	45	20	20	39	21	49	17	59	19
GGTTCTAGTTAGATAG	alt_4372_RC	3	5	1	2	1	3	2	0	4	6
AGAGTTGTTTGTCTCT	alt_4116_RC	103	188	118	98	195	109	191	87	221	102
TGAACTCAACCCGGTT	alt_4372_RC	75	85	95	91	99	78	100	67	91	68
TGGTTACGTCAGTGTA	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
TCATATACGACCACTC	alt_4372_RC	27	57	22	29	45	33	71	33	61	14
TAAGGGTTTCAGTCAT	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CATGTAGTGTATGGAT	alt_4372_RC	4	7	1	4	15	5	4	1	8	3
ATGGTCTTTTTTCGTT	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
ACTTACTAAGATACCT	alt_4372_RC	13	39	13	8	48	16	47	14	37	20
GGTATGCTCTAATGCT	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CTGGGAAGCTGGCAGA	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
GCTTAACTTCGAATTT	ref_4372_RC	58	94	71	69	108	63	88	71	111	76
ACCAGTTGATATACAT	alt_4372_RC	22	50	25	14	31	15	40	23	39	20
ATTACCCTTGCCCTTT	alt_4372_RC	36	71	47	46	68	63	77	44	90	51
GCATACTGCTCTTACG	alt_4372_RC	10	9	9	6	16	12	16	13	20	10
ATGATTTATAGATCCT	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
AGGTACCTGTCCGTAC	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CTCCTCCGCTCCAACT	alt_4372_RC	3	7	7	2	8	6	13	3	4	7
GTGCTGATACTCCTTT	alt_4372_RC	3	11	10	6	18	6	8	8	10	3
ATGATTTATAAACACG	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
AGCTGGTTATTAGTTA	alt_4372_RC	9	22	9	10	8	6	22	14	29	7
AGAAAACGCGACGCCA	alt_4372_RC	94	117	94	93	144	78	129	73	149	71
TTGTAAGTCTTAACAT	alt_4372_RC	5	14	10	11	14	9	22	9	16	6
CGGGGATCTATGATCT	alt_4372_RC	16	23	14	14	18	5	19	10	12	11
TGCCTAAGAGTATTAC	alt_4372_RC	157	247	154	142	264	152	270	132	317	126
CGGGTTGTTTAGCTTA	alt_4372_RC	6	5	7	3	3	4	5	3	11	5
TAGTTGCATTTTGCCG	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
GATGTAGTCATAAAGG	alt_4372_RC	5	5	9	5	6	7	9	7	13	6
CCTGGGTGCGTATAGG	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
TTGCAAACTGAGGGAA	alt_4372_RC	22	34	28	11	27	27	26	14	35	18
CACCATATTACTTTTG	ref_4372_RC	26	60	34	20	44	23	59	13	55	24
GAGCATACAGACTCCC	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
GATTTGCCATTATTCG	alt_4372_RC	17	34	16	15	27	26	32	21	39	20
TTTGGACTGTACCCAG	alt_4372_RC	11	20	22	10	19	8	28	5	19	10
TCGTTCATAGAACTGT	alt_4372_RC	0	1	0	6	3	1	4	1	6	1
ATTCGCTATGTTTCAT	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
AACCATCCCCTTTTAT	alt_4372_RC	1	0	0	0	0	0	0	0	0	0
CAGGTTTAGTTTTCTT	alt_4372_RC	4	8	9	12	13	6	11	11	16	9
CAATTACGGCCTGTTA	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
GGATGCGTCCGAATGA	alt_4372_RC	2	7	3	4	6	1	7	2	6	2
TCGTCGTAGGCGTAAG	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
ATTTTATGATCGTCTC	alt_4372_RC	8	15	18	7	20	14	35	13	36	9
CGCATCGAGAATTTAC	alt_4372_RC	23	49	25	22	27	14	38	24	40	18
CTTGAGCTTTTGAGGC	alt_4372_RC	25	45	17	32	37	29	40	18	34	22
TCCACTCGCTATTCGC	alt_4372_RC	26	51	22	16	62	8	48	20	47	12
TTTGTTATAGTTTTCT	alt_4372_RC	24	35	21	26	23	16	43	26	45	16
CTCGCGTGGGGCTGCC	alt_4372_RC	45	81	70	54	82	41	86	40	79	40
TTTAGCGGGAGTCTGG	alt_4372_RC	8	17	9	5	29	13	22	5	8	7
AGTAATCAATGAAACG	alt_4372_RC	50	73	59	51	82	48	71	58	98	38
CACGGAATTATTCAGC	alt_4372_RC	33	65	48	43	72	29	72	35	58	31
CGTGTGCAGTTTTTAC	alt_4372_RC	14	11	8	10	25	9	21	12	14	8
TCACTCAGTCCTACTC	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
ACCTGAGATCGGCTGT	alt_4372_RC	29	65	39	38	82	29	45	28	50	39
TGGGATTTTCTGCCCG	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
CACCAGGGCGTGTTGA	alt_4372_RC	62	193	87	66	190	52	190	65	182	57
CTCTGTCAAGTTAGTA	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
TCTTGAGGTAGCCTTA	alt_4372_RC	107	241	121	141	245	93	271	128	276	78
GGTGTCAGATTTCATA	alt_4372_RC	30	56	36	35	54	41	67	43	70	26
CTTAGCGCGGGTGTGT	alt_4372_RC	111	232	153	121	239	99	214	105	257	112
GTGGATTTGCGGCACG	alt_4372_RC	42	78	46	34	76	37	91	34	96	43
TCAGTTTTATAATCCC	alt_4372_RC	2	2	0	1	1	6	10	4	10	0
TGTTCTGTTGACAAGA	alt_4372_RC	51	105	55	56	133	68	139	47	147	47
ACCTCAATATGGAGAC	alt_4372_RC	14	10	8	11	10	8	15	7	17	11
GGATGTGTGACTTACG	alt_4372_RC	14	59	27	26	77	19	45	24	49	17
GGCGTGCGCTATATTC	alt_4372_RC	44	68	52	38	81	44	62	36	75	29
TTCATAAGCGTGCCTA	alt_4372_RC	52	76	51	31	83	43	71	41	91	32
TTTGGAAAAAAGATGC	alt_4372_RC	61	79	49	56	81	56	88	32	90	42
CTGGGCGCCTGTAAAT	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
GTACTGCTCGCGACTT	alt_4372_RC	7	1	3	4	4	1	11	3	4	8
ACCTAGGGAACATTTC	alt_4372_RC	0	0	0	0	0	0	0	0	0	0
TCCGTTATGCCTGCAG	alt_4372_RC	4	21	3	5	13	5	12	8	8	1
TTGGGATGGTGGCTTC	alt_4372_RC	9	22	16	16	21	23	19	18	25	8
ACATCGATGTCACCTA	alt_4372_RC	30	77	33	33	65	27	77	26	101	22
AGCCTAAGAGTATTAC	alt_4372_RC	0	0	0	2	0	0	0	0	0	0
GGTTGGTTTTGCCGTA	alt_4372_RC	49	75	47	41	70	43	70	26	76	35
CATGTAACGGCGCTGC	alt_251_missing	29	75	47	30	70	55	61	45	75	36
TAGAACTCACGAATGC	alt_251_missing	0	0	0	0	0	0	0	0	0	0
ACCTAATACATGGACG	alt_251_missing	0	0	0	0	0	0	0	0	0	0
AGTCCGTATAAGTGTG	alt_251_missing	11	16	10	13	20	11	14	6	17	8
GGCGATCCACTACCGT	alt_251_missing	0	0	0	0	0	0	0	0	0	0
ACAATAAAGACGCTGT	alt_251_missing	30	49	35	36	69	38	46	30	50	34
CGAAAAACGGCTCCTA	alt_251_missing	28	29	25	31	35	17	29	31	48	16
TCTGGGGAATTCATTG	alt_251_missing	7	7	3	6	6	5	5	3	5	7
TAATAATCGCCTAGCA	alt_251_missing	15	24	29	16	50	19	33	15	42	26
TTTGTCTATAGCAACC	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CGTCAGTGGAGCTACG	ref_251_missing	66	104	109	84	145	59	123	105	127	64
GGACGGCCCATCTGGA	alt_251_missing	0	0	0	0	0	0	0	0	0	0
TAAAATTCGGAATTTT	alt_251_missing	0	0	0	0	0	0	0	0	0	0
TGGATATGTCTCATGC	alt_251_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTGCGGTGACCC	alt_251_missing	5	15	16	6	14	7	14	7	16	5
TTTTCATTTTAGCGCA	alt_251_missing	4	6	4	3	4	1	7	5	7	1
TTTTAATCTGGTCTGA	alt_251_missing	7	5	11	6	10	5	3	8	11	6
AATGAAGGTGTGTACT	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CCCGTGCAGTTTCTGG	alt_251_missing	0	1	0	0	0	0	1	0	0	1
CTCTCTATCCCCAGAC	alt_251_missing	0	0	2	1	2	3	3	0	1	0
CGTCTCCGATCATTAT	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CATCTAAGGTATTAAG	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CCGGCAGAGCTGAGCG	ref_251_missing	10	18	6	9	7	7	19	10	21	6
CGCCCCTTCTTGTGAT	alt_251_missing	3	5	0	1	1	1	1	1	1	0
CACCAATCACTCAATC	alt_251_missing	6	8	9	4	9	14	11	9	21	10
CGGATGTATTGGTGTA	alt_251_missing	0	0	0	0	0	0	0	0	0	0
GCCCGCAATTAGGGGT	alt_251_missing	2	15	4	2	15	2	11	2	17	7
ATGCTGCGACTACCAG	ref_251_missing	33	50	51	49	62	41	80	33	63	35
AAGTCCTCCCTCAGTT	alt_251_missing	14	48	19	15	23	11	34	12	35	12
CTGGCCACACTACTTC	alt_251_missing	0	2	2	1	1	0	1	3	1	0
AATGACTAAATGAGGA	alt_251_missing	0	0	0	0	0	0	0	0	0	0
GTTCAATGGTGGTCTG	alt_251_missing	1	0	2	0	3	0	2	1	7	1
GCCCGATAGACCCCAC	alt_251_missing	0	0	0	0	0	0	0	0	0	0
ATACGTGTAATCTGCA	alt_251_missing	2	3	3	2	3	1	2	3	5	2
GCTTGCATCCTGGCGG	alt_251_missing	0	0	0	0	0	0	0	0	0	0
GACTGTGGCCGAGGGT	alt_251_missing	0	2	0	0	3	1	1	0	6	1
ACGACAGATGTGGGAA	alt_251_missing	4	8	2	1	5	3	7	4	14	4
ACTGTAGGATTCCTAG	alt_251_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTAACTCTTGTT	alt_251_missing	18	16	17	21	21	22	30	13	28	16
TCGTTCCAGCTCAACC	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CAGCGAGGAGATTGAT	alt_251_missing	0	0	0	0	0	0	0	0	0	0
AGAGTTAAGGTCTCAT	alt_251_missing	33	72	53	53	68	61	81	52	66	53
TCAGCTCTAGAACAGT	alt_251_missing	0	0	0	0	0	0	0	0	0	0
AATAATTCGATGTTTC	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CAATGAGTGCGATTCA	alt_251_missing	2	3	1	0	2	1	1	3	4	5
TAGGTAGTCGGGAACG	alt_251_missing	5	11	10	13	21	10	28	11	15	4
GTTGGTAGTAACTTAC	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CCACCCATATACGTGA	alt_251_missing	0	0	0	0	0	0	0	0	0	0
AGTTCTACCGTTTCCA	alt_251_missing	0	0	0	0	0	0	0	0	0	0
AATGCTTTTTTCCTAT	alt_251_missing	6	17	7	2	17	6	13	8	9	4
GTCGTGTGGGGGCGCC	alt_251_missing	2	19	13	1	24	11	28	11	29	5
CCTGCAGCTCTGGGAT	alt_251_missing	14	20	26	6	27	11	20	5	26	6
GATGCGCATCTAGGTT	alt_251_missing	25	39	24	34	44	28	38	22	47	30
ATGTCAATCTTTTTTC	alt_251_missing	37	45	28	26	43	30	53	23	38	18
GGTGGAGGTTATTCCC	alt_251_missing	37	65	29	23	41	29	59	20	52	31
TCGCTTATGCCCTCAC	alt_251_missing	8	24	8	13	20	9	17	5	17	13
GCTCCTCCTGCTTTTT	alt_251_missing	0	0	0	0	0	0	0	0	0	0
CAAGAGACTGACCAGA	alt_251_missing	46	49	46	35	42	44	64	63	47	32
TGTATCACTATTATTG	ref_5968_new	0	0	0	0	0	0	0	0	0	0
GTTTGTTCATATGTCT	ref_5968_new	71	71	75	91	89	96	81	60	74	81
CGCGGATGGCTATGTT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CATGTCAATTGTCTGT	ref_5968_new	15	15	14	14	17	15	21	19	28	10
GGACTCTTGTACGCAG	ref_5968_new	0	0	0	0	0	0	0	0	0	0
TTGACCTTTCGTGGAC	ref_5968_new	28	30	38	28	30	26	33	42	41	32
CCCCGATTGTTTCTCG	ref_5968_new	0	0	0	0	0	0	0	0	0	0
GAGTGTAACTAATGCC	ref_5968_new	17	16	13	8	7	12	17	6	14	6
TATTCTATGATTTGAG	ref_5968_new	15	10	13	17	32	18	16	14	17	20
CGTGTTGACATTTGTC	ref_5968_new	60	80	80	69	56	74	78	47	91	49
GAGTTCCGTACAGGAC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
ATGCCTCGTCAGTTTT	ref_5968_new	10	21	15	9	18	5	17	17	16	15
GGTTACGGTAAATTGA	ref_5968_new	31	22	41	36	36	24	33	25	33	27
AGATCTATGGCTTAAC	ref_5968_new	16	19	22	15	12	14	10	16	26	17
CCGTTGGATCTGCTGC	ref_5968_new	0	6	1	2	10	5	11	1	13	5
TATCCGCGAAAGCTTG	ref_5968_new	10	9	5	5	7	8	9	7	10	9
CGTGTTTGGCCCGAAA	ref_5968_new	46	50	41	35	53	39	56	38	42	44
CAGTGCGTAGTGGTCC	ref_5968_new	31	41	55	28	45	36	40	55	47	35
ACGCTGAAGTCTTGTA	ref_5968_new	12	14	12	16	7	14	10	9	14	13
CGAATCCATCCTATAA	alt_5968_new	55	63	58	69	71	50	53	54	75	40
TTTTTCCTTAAATCAC	ref_5968_new	22	25	25	29	26	24	33	22	25	24
AGCCCGTGTCACGGAG	alt_5968_new	47	93	67	63	84	56	77	67	103	47
TATATCTAGAGCCGCT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
TACGCTTGTCTAAAAC	ref_5968_new	65	45	66	58	62	53	67	45	59	58
CCCATCCAATAGGTAA	ref_5968_new	0	0	0	0	0	0	0	0	0	0
AGACCTTTGTCTCACT	ref_5968_new	1	1	1	6	2	3	3	5	1	1
CAGTAGTGAGGATCTG	ref_5968_new	0	0	0	0	0	0	0	0	0	0
GTAAGCGCTTAGCGCA	ref_5968_new	34	25	32	22	28	28	33	23	32	31
CCTAGTGATCCTGCGT	ref_5968_new	5	8	13	15	14	7	13	14	11	14
CCAGGGAGGTCCAGTG	ref_5968_new	35	16	27	27	22	24	34	37	38	26
CAGGCCACAATATAAC	ref_5968_new	9	15	10	12	15	9	8	10	9	9
CGCCTTGATATACCAG	ref_5968_new	0	0	0	0	0	0	0	0	0	0
GGGACAGGACTCATAT	ref_5968_new	4	9	11	10	6	6	13	7	13	7
AACGAAATGTTCGTCG	ref_5968_new	50	42	51	55	46	30	46	39	35	43
TCTTTAAGGATATCCC	ref_5968_new	7	8	7	6	10	8	23	8	14	6
CGTATGCTTGTTCCAG	alt_5968_new	26	38	29	23	25	18	30	27	36	24
ATGGCCAGCGCCACAC	ref_5968_new	84	95	109	91	97	75	108	78	85	73
CGAATCTTTAAAAGTA	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CTGCGTTTGTCTGTAA	alt_5968_new	74	96	102	88	120	83	129	76	142	75
GCCGGTAACCTTGACC	ref_5968_new	30	50	37	26	55	23	52	28	66	24
ACGTGCCCGTTAGCTC	ref_5968_new	44	78	71	61	70	57	54	57	66	58
AACGTTTACCTTCGAG	ref_5968_new	90	103	81	89	101	81	97	83	111	58
ACTAATATGATTTGCT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
ACCGGACCCCCATGTG	alt_5968_new	1	3	2	1	0	3	2	0	2	0
GTTCGTTGAACGGTTT	ref_5968_new	34	32	54	47	41	45	43	30	53	30
AATACTGATGCTTCGT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CCGAGGGGGTCTACCC	ref_5968_new	7	9	10	6	9	4	11	5	10	2
TCAAGTTTCTTAAGCA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
TCCACGCTCTCCAGTA	ref_5968_new	72	107	108	110	105	86	103	80	92	64
ATAAGCTGGTTACGCC	ref_5968_new	23	32	37	27	40	28	42	26	41	38
TGTACGTGTATGGCTG	ref_5968_new	18	24	30	24	23	15	23	20	13	25
GAGCATACCCTCGGCT	ref_5968_new	7	6	11	9	12	11	5	11	11	7
TTAGCGAAACGTCTTT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
GTCAATCTCCCCAGGA	ref_5968_new	14	31	12	16	34	9	26	11	28	10
CGGACGATGGGCATTT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CTCTCTTCTTAACCCA	ref_5968_new	60	57	67	69	83	70	70	59	76	60
GTAGAGTTTCCTGTGT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
ATCATCTCGTTGCTTT	ref_5968_new	18	15	19	35	21	27	24	19	20	20
ATACCGGTCCCACGGT	ref_5968_new	22	29	30	15	35	19	37	15	45	29
TCAATCCGCTTTCACT	ref_5968_new	23	18	33	18	21	17	21	21	14	22
TGCCACGCTCCCGTTG	ref_5968_new	52	60	64	47	76	54	88	57	79	33
TTGTAACTCCACAGGC	ref_5968_new	3	10	5	1	10	4	8	3	1	3
CAGCCCTGCGCGGGTT	ref_5968_new	29	51	36	34	48	26	45	33	66	35
GGGGTCTTTGTTCCCG	ref_5968_new	10	24	17	24	16	15	18	9	28	12
CGATTCAACAATAATA	ref_5968_new	4	2	5	1	1	3	2	0	5	2
GGGTGTGCTCCTTTAT	ref_5968_new	57	57	46	50	80	42	52	47	64	55
GCGCAGGCACGGCGCA	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CCGCATGGGCACTACT	alt_5968_new	195	242	266	244	249	205	268	199	306	191
TGTTGAGATTTCCTCT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
TTTCCATTTCGGTCTA	ref_5968_new	56	45	70	73	41	58	50	56	49	41
CGTCGTGTTGTGCTGG	ref_5968_new	14	4	16	22	12	10	12	8	13	8
GTAGCGAGTAGAGCAG	ref_5968_new	13	12	12	9	6	6	5	14	13	11
GTCCAGTGGTTTCGGC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
ATTAGATTCGTGCCTT	ref_5968_new	17	20	24	24	20	18	34	17	16	15
TGAACTACGTTATTTC	ref_5968_new	9	12	7	6	13	9	9	12	9	6
GACATGGAGGTTGGCC	ref_5968_new	24	17	30	23	22	12	13	21	30	15
GTAGAACAACAAGTGC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
TGCTCCCCTTACCCCC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
ATGTAGGCCTTACATT	ref_5968_new	49	50	59	35	47	47	47	54	39	41
GATGTTTCGGACCAGC	ref_5968_new	15	14	8	16	16	10	12	10	19	10
GCAGATCCGCTAGCGG	ref_5968_new	16	16	15	5	12	20	19	16	20	9
ACGGCAAACCAAGTAC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CCGCTTGTTTCGTAGT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CAAGGACGCAGCATAG	ref_5968_new	44	35	44	47	52	41	57	41	47	26
ATATGTAATAGAGATC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
GTAGGTTGTTGCACGC	ref_5968_new	46	39	47	31	33	39	57	41	52	40
TCCGGTTTCACTGATC	ref_5968_new	19	40	23	19	61	18	73	13	41	13
CTTTCCGGGGTTTTTT	ref_5968_new	7	14	13	9	23	10	28	14	24	13
TCGATTGCATTGCTGC	ref_5968_new	59	85	104	86	80	83	80	58	111	65
ACCTCTTGTTTTAGGC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CCTCGGCCTATCCGAT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CTTCTTACGTAGCCAC	ref_5968_new	3	2	3	2	2	1	4	2	1	6
GCCGAATGATCAGGCT	ref_5968_new	0	0	0	0	0	0	0	0	0	0
GCAGTCTCATTTTGTT	ref_5968_new	28	24	37	34	19	33	26	27	21	25
GCTTGTAGTCGAGCGG	ref_5968_new	11	19	9	12	21	9	15	5	25	3
CGGAGCGCCTAGCATC	ref_5968_new	0	0	0	0	0	0	0	0	0	0
CGGTCACTCCTGGTTC	alt_5856_new	0	0	0	0	0	0	0	0	0	0
ATTTTGTATGTTGTAC	alt_5856_new	0	0	0	0	0	0	0	0	0	0
CAGAGAACGGCGTCGT	alt_5856_new	0	0	0	0	0	0	0	0	0	0
TAGGAGCCTTCGGGAC	alt_5856_new	58	116	99	55	110	58	105	68	119	78
CTGGTATGGTTGTGGC	alt_5856_new	12	17	13	15	28	11	15	6	18	8
GTTCACTTACAGCTGG	alt_5856_new	16	23	9	8	19	7	16	7	16	10
CATTGCCCAGGTAAGC	alt_5856_new	0	0	0	0	0	0	0	0	0	0
GATCTCCCTTCACCAA	alt_5856_new	0	0	0	0	0	0	0	0	0	0
ATGATTTGACATTTCA	alt_5856_new	9	18	9	16	25	6	13	9	10	5
CGATTGCGCGATCCCG	alt_5856_new	92	127	116	72	139	88	156	84	116	80
TCTCCCTTACCTTGCC	alt_5856_new	3	11	3	5	15	3	16	2	7	2
TTCGGTGCTAGTACGG	alt_5856_new	41	54	47	30	33	28	59	19	48	28
GTGAGACATCGAGTAG	ref_5856_new	35	72	49	46	68	31	65	39	57	20
TGGGCAGAATCTGTAT	alt_5856_new	24	41	28	26	27	22	41	17	33	15
GTTACAATGCGCTTGG	alt_5856_new	52	115	73	73	132	69	132	71	137	58
CGCAAGCCTGCTCCTT	alt_5856_new	11	21	20	15	26	5	17	11	33	10
TTAGTACACCGGTCCG	alt_5856_new	29	64	47	35	58	35	70	35	54	55
CCCAGCTGGGTCAGGA	alt_5856_new	0	0	0	0	0	0	0	0	0	0
AGTTTTGCAACTGTGA	alt_5856_new	0	0	0	0	0	0	0	0	0	0
TCTGCCTAGAGCGTGG	alt_5856_new	54	98	65	61	91	59	110	63	112	53
GTCCTGATTTCGTATG	alt_5856_new	0	0	0	0	0	0	0	0	0	0
ACTCTCTCCCCTTGCT	alt_5856_new	21	36	13	22	50	12	48	18	33	17
TCGTTCTCTAGGTACG	alt_5856_new	26	45	35	19	51	23	60	29	48	23
CAAATAACACTGCGCT	alt_5856_new	0	0	0	0	0	0	0	0	0	0
GTTACGCACCGCCCAG	alt_5856_new	16	42	29	20	36	29	39	19	33	16
AATTAAGTTTCCTTCT	alt_5856_new	122	223	187	182	191	132	206	177	248	155
TCGGAGTAAGGTTCTG	alt_5856_new	0	0	0	0	0	0	0	0	0	0
TACTGTTTCAAATAGT	ref_5856_new	47	72	57	43	69	47	78	58	89	47
GGCATCTCGCACTCCT	alt_5856_new	15	26	16	13	34	16	25	10	35	4
TCGCTCCGTCTGCTCC	alt_5856_new	29	33	32	31	38	27	44	28	43	26
GAATTAGGCACTGCTA	alt_5856_new	0	0	0	0	0	0	0	0	0	0
GACTCTTTCTTCATTG	alt_5856_new	11	20	23	19	21	11	29	21	33	15
TTCATTTATTATTGCA	alt_5856_new	107	229	140	111	219	100	205	97	224	99
GGGACTATCCTGTTAC	alt_5856_new	16	22	16	18	27	14	25	13	40	20
GGTGGATTTCGCGAAG	alt_5856_new	0	0	0	0	0	0	0	0	0	0
GCGGTACGGCGCCACA	alt_5856_new	60	69	76	69	73	60	68	60	93	50
CATACAACTTCGGCGT	alt_5856_new	21	45	22	33	33	32	43	9	40	28
GATGGCGTGGGCGCGA	alt_5856_new	16	22	13	15	36	20	31	26	25	16
TTGCCGACTCTTCGGG	ref_5624_new	16	30	31	26	20	22	32	15	32	25
GGCGTGTTTCATTGCG	ref_5624_new	10	26	10	8	11	6	14	15	19	11
ACCAAACGGATTTTCG	ref_5624_new	4	14	6	10	11	8	12	3	6	2
TTTAGCGATTTTACCG	ref_5624_new	26	26	22	10	29	13	17	16	27	7
CGGTTGGTCCTGTTTT	ref_5624_new	22	37	28	18	39	24	38	29	39	18
ATTATTTTAAATCAGA	ref_5624_new	136	248	206	151	214	137	242	134	253	136
CGCCATCTTGCCTATG	ref_5624_new	0	0	0	0	0	0	0	0	0	0
CTGTTACGGTCTTATT	ref_5624_new	55	83	80	55	83	42	69	49	100	49
ATCATAGGGCGCTCAC	ref_5624_new	75	136	74	85	82	66	114	52	101	53
CGGGCTGTGGCTGCCA	ref_5624_new	24	37	43	28	31	33	37	21	36	19
TCCCAACTGACACAAA	ref_5624_new	0	0	0	0	0	0	0	0	0	0
GGCATAAGATGGCAGG	ref_5624_new	34	35	40	34	36	35	34	25	39	38
TGTAGCGTTTGTCCAA	ref_5624_new	16	44	26	24	38	23	55	17	39	11
GCCAACCTTCTGGTAT	ref_5624_new	20	87	25	23	83	22	63	20	86	19
TATGGGTAAGTCCCTT	ref_5624_new	33	46	43	33	44	17	55	36	51	35
GAGACGAAATACGATA	ref_5624_new	9	30	15	14	18	13	18	10	12	11
ATCCCCCCTGGTAGTT	ref_5624_new	23	31	22	23	39	18	37	16	30	13
TTCGTGAACACCATAC	ref_5624_new	5	9	5	3	13	10	7	3	10	8
TTGGCGCGGCGGGCAG	ref_5624_new	33	56	44	39	42	45	45	37	57	38
GTATCTTCGGTTCTTC	ref_5624_new	65	68	68	54	86	72	90	69	84	72
GAGTCTGGTGAGGAGG	ref_5624_new	0	0	0	0	0	0	0	0	0	0
CCGCTATTTCGGGTCT	ref_5624_new	36	105	32	29	98	17	110	24	117	19
TCCGGCATTCAGAGCC	ref_5624_new	9	16	16	16	18	16	24	11	14	8
CTTAGCCCTTTATATC	ref_5624_new	0	0	0	0	0	0	0	0	0	0
AATTTATCTCTCATAC	ref_5624_new	0	0	0	0	0	0	0	0	0	0
GTTCTATGATCTTTAG	ref_5624_new	12	28	14	12	21	10	22	6	10	13
CGATTGGTCATTCCGA	ref_5624_new	0	0	0	0	0	0	0	0	0	0
GGTGAAAAACCTTAAC	ref_5624_new	13	19	18	10	18	12	23	10	18	20
CGTGCAGCCTCAGCTA	ref_5624_new	0	0	0	0	0	0	0	0	0	0
AGATTTCATGTCCCGG	ref_5624_new	17	18	34	24	37	14	31	19	22	24
TACTATTACTCATCAG	ref_5624_new	43	51	40	39	57	35	58	37	50	33
ATTAACAGACATCCTA	ref_5624_new	0	0	0	0	0	0	0	0	0	0
TGTTGAGGCAGCCCAC	alt_5624_new	34	54	33	32	55	33	51	34	73	27
AGGCTGAGATACCGGC	ref_5624_new	5	6	4	2	3	4	2	1	0	0
CGTTTTCCCGACGCCG	ref_5624_new	54	57	78	60	73	48	53	62	88	38
GTCTTCTTTTTTGGGG	ref_5624_new	47	53	48	50	77	43	79	52	54	36
CTCTCACTCCTAACCA	ref_5624_new	36	64	34	38	48	27	84	24	72	20
ATCGCGTACCTGGATC	ref_5624_new	3	7	4	3	13	3	13	4	6	4
GTGTTCATAACGCCCA	ref_5624_new	1	12	4	2	3	0	9	4	5	5
CGTGCACATCATGAAT	ref_5624_new	23	32	31	16	26	29	45	30	54	20
CGACCGCTAATTTCCG	ref_5624_new	0	0	0	0	0	0	0	0	0	0
GCTCGATTTGTTGGGC	ref_5624_new	71	104	95	72	118	62	159	94	107	90
TAACTCTACATATACG	ref_5624_new	66	56	82	64	95	60	61	47	68	46
ACCGAGGAACTAATAG	ref_5624_new	0	0	0	0	0	0	0	0	0	0
GTCGCAGGCGTTGGGT	ref_5624_new	0	0	0	0	0	0	0	0	0	0
ACTTTGCGCAAGACTA	ref_5624_new	62	118	82	71	104	83	150	79	114	43
AGAATCACCTCTGCTA	ref_5624_new	57	97	94	65	102	47	90	56	127	46
ATGTATGTTTGTTTAT	ref_5624_new	7	20	12	2	13	6	8	11	6	4
GTCTATCACTTTTTGC	ref_5624_new	47	70	53	52	79	45	84	39	82	43
AAGCAGCCCATCAAAT	ref_5624_new	54	87	62	60	96	45	98	59	106	48
GCATGGTTCGGCACTT	ref_5624_new	67	99	76	67	93	63	95	52	99	61
CGCTTTCCCTGCCGTT	ref_5624_new	34	51	39	34	59	35	70	26	86	30
AGATCATTGCCTAGAT	ref_5624_new	29	39	40	21	44	35	55	24	54	32
GCTAACTGTAGCGGAG	ref_5624_new	97	179	132	110	182	98	182	97	188	86
AAATATGACCACGGCT	ref_5624_new	7	20	8	4	9	5	12	8	8	13
TCACAAATGTTCGCTG	alt_5624_new	62	80	87	54	114	51	105	43	93	56
AGGACCGCACAGGCTG	ref_5624_new	6	4	2	4	7	0	3	4	4	1
ACCATTATAGTGTAAT	ref_5624_new	0	0	0	0	0	0	0	0	0	0
GTTAGCTGTTTTGCAG	ref_5624_new	70	98	75	69	77	61	92	76	96	73
TTCTCAGCTAAAGGAA	ref_5624_new	7	8	7	2	8	6	7	2	1	6
CCCCACGGTTAGTAAC	ref_5624_new	0	0	0	0	0	0	0	0	0	0
ACATAGGATACAGATT	ref_5624_new	6	20	12	9	20	16	19	13	18	12
GCCTAGCTGAACTTTG	ref_5624_new	0	0	0	0	0	0	0	0	0	0
ATTTGTGTATCGCTGC	ref_5624_new	7	16	8	9	20	14	5	13	15	7
GGGTCTCTGCCACAGG	ref_5624_new	29	42	43	29	34	30	47	25	56	26
GAGCATGCTCGCGTCA	ref_5624_new	3	9	6	3	4	5	12	11	4	4
GAATTGTGCATCATAA	ref_5624_new	23	50	47	36	83	32	50	31	57	31
TTCTACTTCTTGACGT	ref_5624_new	164	254	224	172	245	143	279	165	308	162
GGGTGATTAGCGTATC	ref_5624_new	120	124	114	121	119	86	162	98	170	82
CATTAGTCCATGCCAG	ref_5624_new	0	0	0	0	0	0	0	0	0	0
AATCCCTAGATTCCTC	ref_5624_new	2	9	6	4	9	5	13	8	13	3
TTATCTTCCCGTCCGC	ref_5624_new	16	27	20	12	35	21	35	15	30	19
GTCGAGGTCAAAACCA	ref_5624_new	5	14	3	2	14	8	21	7	25	4
GCGACCGACCTCGCCT	ref_5624_new	20	28	28	15	35	16	41	16	33	18
TGTTTTAGCCTTGTGG	ref_5624_new	15	20	11	17	19	6	23	4	20	11
CCGCCTCGTGGCGAAA	ref_5624_new	7	13	4	2	10	4	14	2	18	7
TGCCATCTTCGCTAAT	ref_5624_new	39	60	46	37	53	42	76	34	67	33
TGGTCTAAATAACATC	ref_5624_new	113	192	125	110	141	108	176	89	179	77
TCCTTAGAGCCAGGAC	ref_5624_new	19	37	23	16	25	19	22	20	28	21
CGTGCCACATTGCGCC	ref_5624_new	50	78	56	48	88	39	81	29	74	44
TACTTGCTCGAAATCG	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
CGATCATGAGTATATA	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
CTCTACTTGGACTTAA	ref_3554_upstream	16	29	24	13	21	15	23	20	21	16
AGGTTTAGTTTCACTT	ref_3554_upstream	1	1	0	0	1	1	2	4	1	2
ATTCGTTGTATTATCG	ref_3554_upstream	28	17	33	19	21	28	23	30	21	19
GTTTGGGTGGCTTAAT	ref_3554_upstream	15	5	10	11	5	7	4	12	13	8
TCGCTAAGAAAGTTAG	alt_3554_upstream	58	60	86	67	71	60	78	50	71	38
TCTCAGAGACAAGCCC	ref_3554_upstream	258	142	316	207	178	225	178	207	178	249
TTTTATTTATCTTGTT	ref_3554_upstream	47	30	37	28	25	25	25	53	19	36
AAAAATCGTTGACTCA	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGTTTATAATGGT	ref_3554_upstream	28	11	30	18	16	28	15	27	18	34
GGTCTAGTGGAATGGG	ref_3554_upstream	44	16	42	33	22	37	20	24	17	28
TTACTCTTCCGTCGCC	ref_3554_upstream	6	10	13	13	5	7	6	16	6	17
TACTTTCACTACCTAT	ref_3554_upstream	15	10	15	17	17	12	19	17	14	11
CTACTCAAGTCCATCC	ref_3554_upstream	30	25	44	35	25	23	27	29	18	29
TGTTTTTCTGAGATTT	ref_3554_upstream	68	44	64	40	32	57	20	40	34	43
AAGCAGTAGCTCATTA	ref_3554_upstream	25	21	38	28	16	30	30	27	21	23
TCCCGTGCCCCAGCTG	ref_3554_upstream	144	77	170	141	115	131	76	116	98	119
TTCAATCGCGGCGATC	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGTACTGACTCTT	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
ACATTCTCTGAGGCGG	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGTGCTTAGCCAA	ref_3554_upstream	52	37	63	61	33	75	29	45	44	69
TTCGTGGGGGGGAAGA	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
GTTATGCCCGGGCATC	ref_3554_upstream	115	62	126	94	86	82	62	81	74	92
TTTGGTATTCGGCTTC	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCTATACCGTGTT	ref_3554_upstream	101	73	123	98	38	91	64	77	54	86
TTATGATCCCGACACT	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTATTTCGCGCTG	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
CTAGTTCTTTAAATGG	alt_3554_upstream	180	142	173	161	123	142	143	136	128	154
AAAATTTAGAGTACAG	ref_3554_upstream	18	18	23	16	19	26	21	16	28	13
GTGTCCGGGGATCGCG	ref_3554_upstream	15	22	30	21	21	29	16	30	13	35
CCAATACATCTGTAGC	ref_3554_upstream	2	14	10	12	8	7	16	4	11	7
CGCTGTCTCCGAGCGT	ref_3554_upstream	49	27	46	29	25	42	31	45	17	30
CTCACTGCCATGTGGC	ref_3554_upstream	14	9	7	11	3	11	12	8	11	11
TCGTCGTCCATTGAGA	alt_3554_upstream	422	196	439	334	173	345	193	260	216	355
GGCTCACTTTTATCTG	ref_3554_upstream	17	4	16	13	9	12	16	16	7	15
TCCGGCGCGGTTAAAT	ref_3554_upstream	16	20	16	7	34	7	13	4	23	13
CGCGCAACGTCCAACA	ref_3554_upstream	48	33	71	50	57	53	45	42	39	57
TCGTTCATTATTTTCC	ref_3554_upstream	91	37	86	69	50	70	44	38	54	54
TTTGTATCCGTTTCCA	ref_3554_upstream	116	72	153	107	76	133	75	88	64	122
GACTACGCCGTTTCAG	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
GTACACGTTAGATCTC	ref_3554_upstream	41	52	32	19	49	33	47	32	58	45
TACCTGTGCTAAGGTG	ref_3554_upstream	121	106	162	115	93	139	100	119	108	144
GAAGCGTGATGTCTGC	ref_3554_upstream	14	3	20	15	4	18	12	16	6	14
GCGGTTGTAATTCCCT	ref_3554_upstream	11	8	12	3	6	13	3	13	6	8
TGTCCATGGCCTTCAA	ref_3554_upstream	81	29	111	75	52	87	49	68	48	84
TGGGTCCCGTGGACCA	ref_3554_upstream	33	18	30	24	23	31	30	29	12	29
GCTCACCTTCTTATGT	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGCTCAAACGTGG	ref_3554_upstream	9	1	6	6	3	1	1	5	3	4
CGACGTCGGGAGGTGC	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTTCATTGTAATT	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGGGGGATCGATA	ref_3554_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGCTCTTTATCA	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGGATTCTACGGG	alt_618_upstream	129	67	140	125	68	114	52	119	69	101
TCCCAACGGGATATGT	alt_618_upstream	89	36	101	103	48	84	49	90	37	79
AAGTACGAGTTACCTG	alt_618_upstream	46	16	54	49	22	40	29	56	31	37
AGTACAGTTTACAGGC	alt_618_upstream	16	14	33	26	16	21	19	28	26	14
TCATCTACTGACAGTG	alt_618_upstream	118	66	135	130	68	116	61	118	63	111
CTTTTTAGCATTTTTC	alt_618_upstream	174	83	264	202	91	171	85	179	80	185
CAGTTGTTATTGTGAG	alt_618_upstream	38	20	49	23	20	36	22	41	20	31
CCGGTTGGAAGAATTT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAGTCACTCTAGA	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
TTCACATTCGAGTTGT	alt_618_upstream	59	29	80	74	37	72	35	82	43	57
TCGGGTCGTTATGGAC	alt_618_upstream	26	10	19	25	10	29	16	16	10	18
GGGAGACCTTATATCG	alt_618_upstream	43	24	46	39	26	47	24	34	26	33
TCCGGAAATGTGGCTC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTGACTTCAAGAT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTTTGCGATTTGA	alt_618_upstream	75	32	67	66	42	50	21	70	35	60
TAAGTGGTTCTGTAAG	alt_618_upstream	5	4	13	7	2	4	2	9	12	5
ATGTGGATGGGCTTCG	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
TCATGCCTTACTCGCT	alt_618_upstream	116	39	156	147	64	144	59	108	66	114
CTTTCTCCGTATGTGT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
TATCAGCAGCGCTTGT	alt_618_upstream	93	54	127	76	49	100	45	76	59	102
TGCCCTATTTTTGGTC	alt_618_upstream	125	59	146	109	56	102	62	90	51	91
CAGGATACTGTAGTTT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
GGACAGATGCATAATT	alt_618_upstream	163	73	185	136	62	142	94	129	71	114
CCTGTATTTACCCCGC	alt_618_upstream	14	6	16	15	3	11	6	15	6	8
GCGAGTTTTGCACGTG	alt_618_upstream	85	53	130	104	48	97	87	97	62	91
TCTAGTTTTGTTTGTA	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAACAGGACTCGT	alt_618_upstream	340	152	404	350	182	336	193	345	161	308
GGCCGCCCAGGCGGTG	alt_618_upstream	20	19	40	25	12	22	15	33	12	20
CTTTTGAACATGCGAC	alt_618_upstream	18	7	13	11	10	13	8	16	10	13
CTTTTTGGTAATAGGG	alt_618_upstream	30	16	38	42	12	30	21	31	26	42
CCTTACGAGCGACCCG	alt_618_upstream	162	99	224	227	94	180	103	187	85	180
TGTTCTTGAATAGAGT	alt_618_upstream	4	6	7	13	6	10	9	10	10	5
TTCGATACTGAATCGC	alt_618_upstream	162	67	172	162	83	127	57	114	74	124
TTTTGCTGGTTGTCTA	alt_618_upstream	109	64	141	132	63	134	58	128	84	98
CCGGTGTAGGGACGCC	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
CATCGCCAAAATACAG	alt_618_upstream	8	9	17	13	6	11	9	5	6	6
GCGTCGTGCCTGACTG	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTCTTTGTGTTCA	alt_618_upstream	150	78	115	112	80	97	105	110	80	109
CGTGGGAATGGCGGAT	alt_618_upstream	21	11	24	24	6	21	7	21	14	15
TTCTGTCTTTCTATCA	alt_618_upstream	20	10	32	22	9	22	17	18	16	17
TTCTGGTTCCGAGTCA	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTCTGATCTGGAG	alt_618_upstream	13	4	8	20	6	13	1	12	5	16
ATATTAGGCCCACATA	alt_618_upstream	26	16	44	39	26	33	17	45	20	25
TAAGGAAGTCTGGAAA	alt_618_upstream	25	11	30	26	10	24	16	26	15	44
TTTTGTAAACTGCACG	alt_618_upstream	47	57	73	62	42	72	52	54	41	51
CATGGGGCTCCGCGCT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTCCATTTCTTTT	alt_618_upstream	40	25	56	55	26	52	30	38	25	33
TAAGGTCGCTAACGCA	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTTTCGCCGGAGC	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
TGCCAGGACGTTAGTA	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
CGCGATCTTGCGACTT	alt_618_upstream	15	9	26	15	13	20	9	9	10	13
TAACCTGCATACTTGA	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
GACTGTTTTTCTCCGT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
ATGTATGAACTACATC	alt_618_upstream	22	9	26	30	4	25	24	17	9	24
GAGTCGATCTTGTCCT	alt_618_upstream	26	7	26	23	10	19	8	20	13	14
TATCCATAAGCCACAC	alt_618_upstream	89	51	121	75	53	90	55	88	61	93
TTTGGGTACGCTTTCG	alt_618_upstream	229	123	286	203	112	190	139	190	109	179
AATTACATTATGCCCC	alt_618_upstream	2	3	10	12	5	3	2	7	2	10
TATTCATTGGATTTCG	alt_618_upstream	19	9	32	28	9	21	12	27	9	17
CTCGGTAGCTGCATGT	alt_618_upstream	54	48	45	47	57	40	48	27	54	33
TTGTGCCCACCATGAA	alt_618_upstream	52	30	76	51	28	60	31	68	17	31
TAAGCACGGGCGCGCG	alt_618_upstream	24	14	42	25	15	19	14	27	19	20
TTCGTCCTACACTGGG	alt_618_upstream	147	75	171	156	101	182	78	154	74	170
TTTATACTTTAACTCT	alt_618_upstream	116	43	121	118	58	111	49	108	52	115
TCTACGACTTCAGCAC	alt_618_upstream	10	6	12	11	3	10	5	13	11	15
GCTTTAATTAGAGCTG	alt_618_upstream	14	7	14	14	9	20	8	17	8	7
CGGAACGTGGTGAGTC	alt_618_upstream	40	20	41	42	20	38	12	43	26	38
TCCCACGACAGATACC	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
TAAATGTCCTTTTGCA	alt_618_upstream	208	95	228	225	98	196	111	202	100	226
CGTATATACTTCTCGT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
CCATGCGCATGTAGAT	alt_618_upstream	30	13	49	36	26	33	17	30	18	32
ATCACTTACAGATTTT	alt_618_upstream	111	50	144	127	47	109	42	94	64	105
GTGATTTCCTACACAT	alt_618_upstream	13	9	15	12	10	24	13	18	11	22
AATACCGGCAGCCTAT	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
TTGCACGCGCTGACCA	ref_618_upstream	115	53	186	134	53	132	48	131	53	119
AGTAAGCAATGATCGC	alt_618_upstream	33	23	53	47	20	35	15	32	16	42
TTCTCACTCTGTCGTA	alt_618_upstream	64	46	67	49	31	64	38	62	24	70
CCGTGTTGTAGGCCTG	alt_618_upstream	76	27	84	65	35	67	40	65	38	57
AGAGGTCTGCAGCATC	alt_618_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCCCACTCTCGGC	alt_5973_new	14	53	15	15	61	14	51	18	84	11
ACAACTAGGCGTCAGG	alt_5973_new	33	55	34	29	64	29	57	16	60	19
CCTCCCATTTTTTTTT	alt_5973_new	20	39	20	10	54	9	46	14	66	12
GACGTGTTGGCTCACC	alt_5973_new	0	0	0	0	0	0	0	0	0	0
CGGTAAGCGTAGTGAC	alt_5973_new	31	47	39	35	60	27	51	19	54	31
TCTGTCGGTGGGGACA	alt_5973_new	12	10	10	13	18	11	16	3	13	4
GCATAATCATTTAAAA	alt_5973_new	12	4	14	2	15	9	11	9	17	9
CTTCCGTCGTTTCCGC	alt_5973_new	18	47	32	24	58	15	69	25	54	22
ACGTGTAGACAGGAAT	alt_5973_new	56	87	78	66	112	45	86	56	123	64
TTCCTGCCTTTTTATC	alt_5973_new	0	0	0	0	0	0	0	0	0	0
TGGATCCTATTATCGG	alt_5973_new	39	51	35	34	34	30	54	30	39	27
GAGGGTGAGTCTCCGT	alt_5973_new	15	9	20	19	21	12	16	12	6	26
CCCTTTTACTGAAGCC	alt_5973_new	83	151	95	81	116	80	121	81	143	77
GATGCGCTGGAGTCTG	alt_5973_new	40	49	36	27	39	28	58	31	41	27
CTTTATGCGCACCCGA	alt_5973_new	0	0	0	0	0	0	0	0	0	0
GCGCATCAGTCCGTTT	alt_5973_new	106	225	143	123	210	121	199	123	214	104
GACGGTTAATTATTGT	alt_5973_new	6	13	5	9	23	9	12	4	11	7
ATTGGGAGGGTTGTCG	alt_5973_new	6	2	4	9	13	5	14	2	4	5
CTTTGCGCTTATTCTG	alt_5973_new	19	41	19	17	25	18	31	14	34	19
ATGTATTAAGGTTAAT	alt_5973_new	11	17	15	7	8	4	15	6	12	7
TTCCTAGATCTTGGGC	alt_5973_new	66	123	74	61	138	59	118	60	129	47
ATAGCGGAGCAGTGTT	alt_5973_new	32	52	27	30	40	26	31	23	54	16
TTCGACCTCCGGGCGG	alt_5973_new	1	11	4	8	6	6	8	5	4	2
GTTGTCGTAGTGCTTA	alt_5973_new	12	22	15	16	20	13	26	21	31	8
CTCGGAATTCATATCA	alt_5973_new	47	65	47	49	75	48	70	43	85	54
TGTCCTTCACACTCCA	alt_5973_new	2	9	1	5	10	1	7	5	6	4
GGCTTCTGTGTGGTCT	alt_5973_new	10	9	21	19	18	15	24	17	22	9
GTCTATGATTCCGAAT	alt_5973_new	0	0	0	0	0	0	0	0	0	0
AAGTACAAGAAGAGTT	alt_5973_new	9	13	8	6	7	3	13	5	12	7
CCCTTCATGAATACGC	alt_5973_new	16	32	29	11	26	15	22	18	34	14
AGACTTTTGCTAGCTT	alt_5973_new	1	1	1	4	0	1	1	1	4	1
AAAGGTTTTCTGTGAT	alt_5973_new	43	76	53	24	87	34	90	42	77	25
ATTTTGTAGCTTTACC	alt_5973_new	18	38	26	26	24	19	32	24	30	9
ACGGGTATGGATCCAT	alt_5973_new	65	56	60	44	69	43	74	46	75	50
GTCAGAACAAGGCCCG	alt_5973_new	0	1	2	2	0	0	3	5	2	0
CCTTGTCTTTCGCATG	alt_5973_new	39	57	52	44	89	34	81	32	90	40
GCAAGGAACGTGGTAA	alt_5973_new	9	23	24	10	15	26	20	13	32	18
TTGTCCACCCCGAGTA	alt_5973_new	30	72	47	34	54	42	50	40	50	35
AGAGGATCACTACATT	alt_5973_new	0	0	0	0	0	0	0	0	0	0
TTAGTTAGCTGCTAGA	alt_5973_new	3	5	3	3	4	2	6	6	5	1
GTGGTTCCTGTCTTAT	alt_5973_new	62	82	74	66	95	57	66	72	93	45
TTTCCATGGCTATAGG	alt_5973_new	0	0	0	0	0	0	0	0	0	0
TCGCACTTAATTGGTG	alt_5973_new	4	5	3	6	4	3	9	5	8	1
GTATTTAGGTTCAAAC	alt_5973_new	2	9	11	4	13	4	17	8	7	5
CCTTTATGCCCTCGCA	alt_5973_new	0	0	0	0	0	0	0	0	0	0
GCATAAATACCATTTC	alt_5973_new	12	18	19	14	27	10	23	15	15	10
TTTATATACGTTAAGG	alt_5973_new	0	0	0	0	0	0	0	0	0	0
AACCGGGCCCTATTAG	alt_5973_new	37	53	49	35	55	29	69	34	82	26
ATGTTACTATGAGTAC	alt_5973_new	12	26	14	29	34	20	37	20	30	21
CGTTTCTCGTATAAGA	alt_5973_new	45	79	61	49	74	35	68	49	72	39
TATAGGGGCTCGTCTG	alt_5973_new	52	66	65	61	83	49	96	36	79	36
GCAAATGTGTGTACGT	alt_5973_new	14	24	19	11	37	10	21	17	22	16
ACGGCAAACGTGTCGA	alt_5973_new	29	51	33	33	33	20	46	23	40	20
GAGTTTGATCCTTAGT	alt_5973_new	0	0	0	0	0	0	0	0	0	0
CATCAGTTTTTTGCGT	alt_5973_new	15	29	21	7	35	4	15	17	28	7
TAGTATCTTTGTCTGT	alt_5973_new	0	0	0	0	0	0	0	0	0	0
GTCTTGCTCGTCAATG	alt_5973_new	89	131	110	113	140	96	170	95	197	52
ATATGCATTAGCGGTT	alt_5973_new	0	0	0	0	0	0	0	0	0	0
GGTGCGGCGCTAGCAG	alt_5973_new	31	39	33	24	51	18	49	21	57	20
GCCTGACTTTCTCAAC	alt_5973_new	10	26	8	15	16	8	17	11	32	6
ACGGACTTGGGCACGT	alt_5973_new	6	6	5	6	8	2	6	3	4	3
ATGATGACTGCGTGCA	alt_5973_new	0	0	0	0	0	0	0	0	0	0
TTACGGAAGCATCTAT	alt_5973_new	31	36	24	21	40	33	19	23	29	27
ATACTTCTCAACACAC	alt_5973_new	7	11	5	8	4	9	11	3	13	10
GTTCGTCATCGGAACG	alt_5973_new	0	0	0	0	0	0	0	0	0	0
CTTCGCTTCGCGATAT	alt_5973_new	4	6	6	5	5	5	5	2	9	3
CTCTCGTGCCGGGCTT	alt_5973_new	30	45	54	27	46	31	46	23	52	30
TATGGTGCACCGTATA	alt_5973_new	0	0	0	0	0	0	0	0	0	0
CTTGCGCTCGCTTCTA	alt_5973_new	21	42	24	15	44	23	39	20	45	19
AGGTTCCTGGCAGCCG	alt_5973_new	6	8	5	6	9	12	13	10	8	8
TTCTGGTACATTCGGA	alt_5973_new	0	0	0	0	0	0	0	0	0	0
CCAAGTTCATGTTGTT	alt_5973_new	34	87	53	37	73	42	71	21	68	35
TCGTGAAAGGATAGTG	alt_5973_new	56	72	69	49	85	39	74	28	112	67
CATCAGGACAGTAATG	alt_5973_new	5	17	17	14	18	8	23	5	19	7
AAGCTCCCGTTACTGC	alt_5973_new	61	67	56	50	68	53	87	46	79	47
CGTATTCTGGGTACAA	alt_5973_new	15	24	13	10	24	14	35	20	29	21
AGACCAGCTCATTCAT	alt_5973_new	22	30	39	20	36	16	58	30	45	24
CCTCCCCGAAAGTAGG	alt_5973_new	6	30	9	12	27	7	29	3	27	9
TTTCCGTGGCTGGCCC	alt_5973_new	0	0	0	0	0	0	0	0	0	0
GGATTGCTACTTTTCA	alt_5973_new	34	41	34	26	45	25	57	35	59	37
TTTTCTCTGAACAGCT	alt_5973_new	32	47	34	28	58	35	41	30	51	20
ATGTTTCTTCCCGACA	alt_5973_new	0	0	0	0	0	0	0	0	0	0
CATGGCCAATCGGTTT	alt_5973_new	19	17	16	16	12	11	19	12	12	15
TAGCTTCCGGCATACT	alt_5973_new	70	110	82	60	116	64	96	63	116	68
ATATTTCGCGAGTTTC	alt_5973_new	21	45	43	40	47	27	32	26	42	18
GAATTGCTTCGTTCTC	alt_899_negative	15	21	15	9	20	5	17	10	21	7
GGAGGGTGTTAGTCTC	alt_899_negative	3	8	2	7	12	5	3	2	8	4
CATGTTCAATCCTAGT	alt_899_negative	21	25	26	15	32	15	32	14	31	12
TGTGTGCTCCTGATTC	ref_899_negative	28	62	36	33	41	36	39	26	60	23
TCCTCCAGGCACGTCG	alt_899_negative	20	29	23	13	31	7	42	19	31	19
TAATAATAAACAACAT	alt_899_negative	0	0	0	0	0	0	0	0	0	0
CTTGGCTGTTTCCTAT	alt_899_negative	11	25	7	10	28	15	28	9	20	6
TGTAATGTCCGTTAAC	alt_899_negative	44	59	54	37	64	29	61	29	54	28
TGTCGTTATGATAGGA	alt_899_negative	5	13	8	12	19	12	10	12	12	9
GATAACCGCTCATCCC	alt_899_negative	5	7	2	3	8	3	10	0	8	1
ACGTGAAGTATATTAC	alt_899_negative	0	3	1	2	3	2	0	0	3	1
GGGACCAGTACCGGGG	alt_899_negative	33	55	49	36	61	31	97	38	71	33
ATGTTCCCTGCGGCAA	alt_899_negative	17	31	32	27	31	11	30	9	32	14
GGTCTTAGGCCTTGTA	alt_899_negative	31	88	39	42	78	30	73	42	83	27
GCTCCGACGGCCGGGG	alt_899_negative	39	83	42	41	51	34	70	30	73	39
CACCCATACGTAGGAA	alt_899_negative	24	32	28	29	31	10	35	14	33	9
TGATCTATGATGGAGT	alt_899_negative	8	10	8	10	19	9	19	3	10	13
CTCGATGTCACGCAGG	alt_899_negative	18	31	25	21	31	24	32	17	44	27
TTCCGGCAATTGGACT	alt_899_negative	75	95	86	81	121	66	107	67	108	53
GAGCAAATGTTCCGTC	alt_899_negative	50	96	89	57	108	51	85	37	99	39
AGGATCCGTTTCTAAA	alt_899_negative	37	53	37	40	45	50	59	22	65	30
CGCAGTGTGATACCAG	alt_899_negative	9	19	5	9	15	9	12	5	12	5
CTATACTTTACCGTCT	alt_899_negative	0	0	0	0	0	0	0	0	0	0
TTTTAACATCCATCAC	ref_899_negative	39	86	57	36	80	50	107	49	77	47
CTTACATCGAAGCGGC	alt_899_negative	37	76	55	49	78	33	66	44	75	35
ATCGTCTCCATCTCAT	alt_899_negative	3	1	2	1	1	1	0	3	2	3
GTCTCACCGTACTTTA	alt_899_negative	4	17	17	4	21	11	20	13	14	9
TTTCATATCCGCGCCA	ref_899_negative	21	34	34	27	26	24	33	15	36	21
GATCGGGTACCCATGT	ref_899_negative	0	0	0	0	0	0	0	0	0	0
TCGTCTGGGTTGTTCC	alt_899_negative	0	6	3	5	4	3	6	4	7	6
GAAGCAAGTACCCGAC	alt_899_negative	13	23	17	25	28	18	26	20	33	16
TCAAGAAGTTTATAAA	alt_899_negative	0	0	0	0	0	0	0	0	0	0
CATGGTGGCGATGACA	alt_899_negative	67	96	82	61	98	67	89	56	118	66
AAAATAGACTATACCA	alt_899_negative	0	0	0	0	0	0	0	0	0	0
TTGCATTTCGCTGTAG	alt_899_negative	0	0	0	0	0	0	0	0	0	0
CTTTAACTTGACTCTC	alt_899_negative	32	45	22	17	54	41	48	26	42	18
GACATCTCCTAGCAAG	alt_899_negative	23	42	24	24	40	23	39	13	36	17
TTTGTTCCGTCGTATA	alt_899_negative	0	0	0	0	0	0	0	0	0	0
GATTTATACCCGCTTT	alt_899_negative	0	0	0	0	0	0	0	0	0	0
GCGACCCGGACAATCG	alt_899_negative	45	57	38	31	77	37	68	45	75	29
CGTTGATTGTATTCCC	alt_899_negative	11	8	7	9	19	8	18	8	9	4
GCTCCACGTCCCTTCC	alt_899_negative	0	0	0	0	0	0	0	0	0	0
TCCTCATGGTTCTATG	alt_899_negative	36	50	28	28	51	39	66	23	63	21
CCTAGGCTGTTCTCTG	alt_899_negative	3	3	3	7	7	3	4	1	1	2
GTTTTCGTGTTTCTAG	alt_899_negative	0	0	0	0	0	0	0	0	0	0
TGCTCCAAACGCAGAA	alt_899_negative	3	14	11	3	6	5	17	1	3	5
TCCACGCCTTCTATCC	alt_899_negative	0	0	0	0	0	0	0	0	0	0
GTCCGTAAGATCGCAT	alt_899_negative	52	75	64	44	61	46	63	64	89	59
CTGGCATCTTAAGGAA	alt_899_negative	24	53	39	23	47	28	41	34	42	18
TGCCACGTCTCCGAGC	alt_899_negative	9	8	6	2	5	4	1	7	8	3
CGAGGTCTAGCTATAG	alt_899_negative	87	208	126	124	207	98	218	95	201	113
CGGATCGCGACCATGG	alt_899_negative	32	78	57	45	62	39	74	31	73	36
TCTGCCTACGGTCAAA	alt_899_negative	41	75	35	37	92	42	87	45	97	37
TTACAGTCCCGATGAT	alt_899_negative	13	27	21	25	41	27	39	18	51	17
TAATCTTACTTTATGC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TATGTATCCACGCGCA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCCTACATCATTT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GCACAATGTTTCGACA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
ATTTACATTGATTTTA	alt_3426_upstream	21	12	12	19	13	14	8	17	12	14
AATGATCTCAGAGTCC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
AGTGCTGTAATAATAA	alt_3426_upstream	14	16	26	15	13	10	8	16	13	10
GGTATTGTCCATGTGC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGCTTATAATTCG	alt_3426_upstream	37	16	34	31	14	38	17	29	26	21
GGGCCATCTCGGTCTC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CCAGCTCCTATTGCGA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
AGTACGTTCATTGATT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGGTATCGCTAAT	alt_3426_upstream	16	21	19	33	19	23	30	19	14	22
TATCCTGGGACCCCAT	alt_3426_upstream	28	13	37	19	15	22	8	21	17	24
AGCTCAATAATCCCCA	alt_3426_upstream	29	15	37	33	16	41	22	43	32	25
AGCATTAGGGTTACCC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTGCACCGCTCG	alt_3426_upstream	15	4	18	10	6	13	10	12	9	9
AAGAATCGCTGCCGCC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTTAGTGTGGGCC	alt_3426_upstream	63	47	79	62	47	63	50	60	56	57
GTATACCTGGTTCATT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTCTATTAGTAGT	alt_3426_upstream	5	5	3	2	3	5	2	6	1	1
TTGCTATAATATATGG	alt_3426_upstream	23	15	23	22	20	24	20	34	18	32
CAGGCTTAGTTTATAT	alt_3426_upstream	30	25	42	26	21	34	26	26	34	23
TTACTATCGTGCAGTG	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
ATTCATGACCCTAGCC	alt_3426_upstream	29	13	12	17	13	21	9	7	8	13
CCTTCAGGCCACTCAT	alt_3426_upstream	39	29	40	41	24	36	30	40	32	33
GTCGCATTTACTTAGT	alt_3426_upstream	20	21	20	23	10	18	15	31	15	19
AAGTGTGCCCTACAAT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TTGATGCGCACTCTTC	alt_3426_upstream	14	7	17	28	2	12	6	14	15	13
GGAATAGAGCCGGCCC	alt_3426_upstream	44	30	43	52	32	53	28	30	30	42
GCCATGCAACGGACGG	alt_3426_upstream	9	5	10	10	8	8	13	16	2	2
GCTCTTGTCGCATACA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGGAGGTTGATAG	alt_3426_upstream	14	12	23	10	13	7	16	19	11	12
GGCATTCACGATCGGC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GTAACCTTATCATAGA	alt_3426_upstream	98	68	115	90	72	74	83	90	61	68
CCGGCCTAGTGGTATT	alt_3426_upstream	51	48	80	54	54	63	47	60	56	47
CATTACAAGCGGTCGA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGCTTTTCCGATT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTTATCGTCAGCT	alt_3426_upstream	22	9	29	24	13	16	14	19	16	24
TAGCTTTGTCCTTTCT	alt_3426_upstream	5	2	5	6	5	4	1	2	1	3
ATTTATCCCGGCGAAC	alt_3426_upstream	5	4	9	9	3	1	4	3	0	1
TTATGGCGCTCACCAT	alt_3426_upstream	63	37	79	69	37	51	40	67	38	52
GATAATATATCGGCGC	alt_3426_upstream	15	20	18	11	20	27	11	12	14	10
TTTCTTGATCGCTGAA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GCTGATGCCCCGTGAT	alt_3426_upstream	42	19	46	38	21	43	38	33	26	24
AGTCCCTGAACCTGAC	alt_3426_upstream	16	23	24	16	18	20	17	17	12	22
ACGTCTAGTGTTACGG	alt_3426_upstream	39	20	38	36	22	33	23	25	28	35
CTGCCCTTTTATTGTC	alt_3426_upstream	29	14	21	36	16	28	14	21	12	22
ACGTCTACTCAATAAG	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTAGAAAACGATATGT	alt_3426_upstream	12	12	17	10	7	6	2	13	7	15
GATAACGATCTTTTTC	alt_3426_upstream	21	15	29	28	21	26	14	20	12	10
AACGATTCAATACTAT	alt_3426_upstream	31	28	36	37	27	38	28	33	26	37
GCTCCAGTACACTTCC	alt_3426_upstream	0	4	1	1	5	0	8	0	6	0
AAGCTTACCTCACGGG	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
AACACGTAAATCCGCA	alt_3426_upstream	17	13	19	14	10	20	11	15	10	10
GGTTGCGCATGATCAG	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGTCAGGTTTAGG	alt_3426_upstream	5	6	16	14	6	6	6	4	5	7
GACTTCGTGACTGTCT	alt_3426_upstream	18	9	10	21	11	11	9	13	12	15
AAAGAGGTGCGGCTCC	alt_3426_upstream	32	29	36	22	23	35	36	28	23	32
CTACGACGTCACCTGT	alt_3426_upstream	4	4	4	6	3	8	2	8	5	5
CAAGTATGTTTATTTC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
AAGGCCCGCTGTTCCA	alt_3426_upstream	22	14	23	12	11	15	16	18	19	13
CAGTTTCCTTCTTACC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GAACAATCGTGACCGA	alt_3426_upstream	33	35	58	36	35	52	25	45	39	47
CGGATGTTTCGTTGTA	alt_3426_upstream	20	27	33	28	19	32	22	37	16	37
TAGGGCCTTGCTTTCC	alt_3426_upstream	83	48	69	71	36	59	47	59	55	55
AGGTTCGAGTGGGAGT	alt_3426_upstream	67	47	75	76	45	82	61	53	65	65
ATTTATTCTTGGCGCA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
AACTAAATATATTAGC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTATATGACTATG	alt_3426_upstream	63	52	76	72	47	92	45	80	46	56
GTCACCGCCTTGCGAT	alt_3426_upstream	10	13	14	8	7	13	10	13	9	8
GATTCCCCGTCGGCAC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCGTATACACGTT	alt_3426_upstream	16	12	24	19	8	11	12	22	14	24
CAAGGCTTGTCCGCGT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GTATAATGAAGCTCTT	alt_3426_upstream	7	13	24	17	6	17	8	15	10	21
GTGTGTAGTATAGTGT	alt_3426_upstream	24	22	30	16	9	15	18	17	29	6
CATTCCTTCCTGAGCG	alt_3426_upstream	2	1	0	0	2	3	1	1	1	1
TGAGACTTGCATAATA	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GCCGCACTGACGTGAG	alt_3426_upstream	86	89	107	99	66	89	87	72	77	64
TAAAGACAGTACGCCT	alt_3426_upstream	49	37	47	62	36	36	33	51	44	54
AAATGCTTGGACGTGT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGTCCTACGGCAG	alt_3426_upstream	26	10	36	16	10	28	9	22	22	23
TGAATAAACATCTCAC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
CTGAATCCCTGTGGTG	alt_3426_upstream	3	1	5	3	1	3	6	3	0	6
TGCAATCACCGATGTC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACTGATGTCGTT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GCTCATCGTTGACGGC	alt_3426_upstream	92	43	95	95	41	81	66	67	68	65
TGTTGTACGAGTGCGC	alt_3426_upstream	14	10	12	11	4	10	7	10	8	14
TTGTGAGTGTCAGGGC	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GCTATCGAGTGGATTG	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAGTGTGGATTGT	alt_3426_upstream	0	0	0	0	0	0	0	0	0	0
TATCTGCGACTGAGTA	alt_3426_upstream	6	3	4	6	2	9	2	1	0	4
GAACCCAACTTATCTA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
CTTATTTTTAAGACGA	ref_4832_RC	168	53	151	138	65	137	60	145	67	133
ACTAATTAGTATGTGT	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TTTCACCTCGCAACAG	ref_4832_RC	39	14	46	40	23	44	18	35	15	30
ATCGTATTATTCCTTA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TGTAACTTACTGCCCT	ref_4832_RC	160	66	153	142	51	139	44	93	75	118
GACTGCCCTGCGCTGT	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
GACCATTCATCCCTCG	ref_4832_RC	232	77	255	198	89	207	74	196	85	216
GCCATATTCCATTAGC	ref_4832_RC	58	21	64	66	27	48	18	61	24	40
GACATGGGCCGGTTGC	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
AGGGTTGAGTTTCAGC	ref_4832_RC	3	5	1	5	2	6	3	2	8	12
GTTTTTTGTAGCAAGA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
GCGCAGCCAACCCAGT	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TGGCCCCGTGGAAACA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TTGAGAGTCATGCACT	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
CCGGTCCTCTAGCAAA	ref_4832_RC	128	59	146	124	41	111	58	120	61	123
CCCGGCTCCCATCGCT	ref_4832_RC	274	98	275	253	91	273	101	212	92	244
GAGAGGCGTTGTAAGT	ref_4832_RC	67	33	102	62	36	71	35	54	39	78
ATGTGTTGCGCGGATG	ref_4832_RC	145	58	192	152	60	169	72	123	75	141
TAACATCGAAGGTCTA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TACTCGAGCATAGATA	ref_4832_RC	234	98	302	264	88	230	98	232	109	218
CCCAAATTCTTTTAGG	ref_4832_RC	282	135	338	270	121	247	116	222	132	234
GCTGAAATGTATGAAA	ref_4832_RC	42	15	33	28	10	29	15	14	14	28
GGGGTCGGTTGTAATC	ref_4832_RC	75	21	103	75	45	72	33	70	41	76
GTGTTGCGTTCTCTGC	ref_4832_RC	214	75	295	250	78	235	89	199	82	191
TATTCCTCCTCTCGCT	ref_4832_RC	203	81	213	193	76	183	94	180	101	212
CTTTCGCTTACGTGTT	ref_4832_RC	432	163	513	395	180	406	179	380	170	395
CTATCACGGGGGTTTC	ref_4832_RC	60	17	60	48	14	64	18	49	28	53
CTGGGTTATTTACGGT	ref_4832_RC	53	16	69	64	18	48	14	53	30	42
CGGCCCTAGCACTCTC	ref_4832_RC	34	6	31	20	8	23	8	37	17	27
TTTGAGTACTAGTTAA	ref_4832_RC	265	138	388	294	123	310	157	256	166	264
ACGAAGCCAGCGCTGT	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
GGCTAACGCTTAGCAC	ref_4832_RC	3	2	0	5	0	1	0	6	1	4
AGTCTTCTAGCCAGGG	ref_4832_RC	47	23	75	50	21	41	22	49	16	41
GGACGCACCGTGCGGG	ref_4832_RC	48	28	52	53	20	47	25	36	24	38
CAGATCCTCACTGTTA	ref_4832_RC	248	115	306	285	102	264	102	269	100	249
ATTTGATCAGTCGCGG	ref_4832_RC	36	18	53	41	16	44	13	26	20	41
CGCAGTTCATATGGTG	ref_4832_RC	103	39	137	103	45	102	39	86	46	108
AGATATCATATAGGTT	ref_4832_RC	117	44	124	105	55	126	50	103	34	82
TTACTTATATCGTTCA	ref_4832_RC	258	100	342	284	118	292	122	293	99	259
TAGATCAGCATTTGCC	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
CCCTCTTCGACACTTG	ref_4832_RC	380	141	407	401	131	362	120	360	144	330
TACGATGCTCGAAAAA	ref_4832_RC	31	15	45	36	20	33	24	21	14	29
TCCACCCACAATCAAC	ref_4832_RC	154	103	161	169	143	143	116	161	125	107
TGCTGTAAGTCATGGT	ref_4832_RC	54	19	66	54	21	55	22	39	18	45
AGCTGAACAGCCACAA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
CATCTCCGTGACTGCT	ref_4832_RC	48	27	52	51	40	48	37	39	22	41
CCTAACTAACTACTAC	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
CTAGCCTCCATGCACA	ref_4832_RC	85	36	114	87	42	57	35	78	47	70
GCGGCTCGTCCTCCGT	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TACCTTTAGTGCGCAC	ref_4832_RC	10	27	12	12	17	18	15	11	16	17
AAAAAGGCTTGTCTGA	ref_4832_RC	143	72	178	151	68	155	55	141	64	168
GTGCTTGTCAGACCGT	alt_4832_RC	69	36	85	73	28	50	29	71	38	76
CGGGTGACGTCGAGTA	ref_4832_RC	58	16	64	79	16	51	26	73	19	86
TGGAGTGTGCGTAGGG	ref_4832_RC	23	12	33	20	14	34	8	18	8	20
TGACAGCTCCTGTCGC	ref_4832_RC	238	82	296	224	68	245	103	209	111	208
TTATAACTATGCTTCA	ref_4832_RC	66	33	100	61	18	82	49	64	44	65
ATATCATTGGTCATTA	ref_4832_RC	64	15	49	56	25	57	30	46	29	45
ACTACACCACTTTATT	ref_4832_RC	44	24	56	50	31	41	32	45	24	25
TCTGATCATGACTACG	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TATCATTATTCCGTCA	ref_4832_RC	83	26	66	55	27	71	28	61	18	75
CATTTCTTTCAACTCG	ref_4832_RC	117	61	178	161	71	149	51	140	66	118
ACGCCGCGAGGTAGCT	alt_4832_RC	212	67	237	200	66	202	74	190	58	190
TTGTACTATGTCGTCA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
AAGACGATCGGCAGTA	ref_4832_RC	125	62	184	144	55	121	56	122	67	116
GCTGCTAAACCCATTG	ref_4832_RC	51	16	46	46	14	43	21	51	18	43
AACTTATCGTCTCGTT	ref_4832_RC	141	60	215	151	65	179	57	156	62	146
GGCCCGATTGTTAGTA	ref_4832_RC	133	45	126	115	41	124	55	122	40	140
TTGCTAATACCAAGAA	ref_4832_RC	201	75	220	189	52	167	55	205	74	166
TGATGATGATATTCAA	alt_4832_RC	197	81	221	202	87	165	74	196	69	178
ATGAGGATCCTTATAA	ref_4832_RC	30	12	38	44	17	45	19	25	9	28
CTTCCGAACAGGGTAT	ref_4832_RC	24	12	23	32	10	28	14	22	19	29
AAGACTGTAGTGGTTC	alt_4832_RC	150	47	185	176	66	138	60	159	72	142
CGCCCGGGAAACTTGG	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TTCAACGGATCCTCTT	ref_4832_RC	13	4	19	19	5	16	5	18	8	9
TCTTCTTTGTTCCCGC	ref_4832_RC	47	9	48	45	13	36	13	45	25	39
TGACTTGTAAAGGGCT	alt_4832_RC	41	26	54	56	27	39	31	46	29	52
CGTATGAGTCATGCCA	ref_4832_RC	484	156	476	502	154	385	126	438	149	409
TCAGCATCCTTACAAT	ref_4832_RC	24	10	22	17	4	20	8	20	13	21
AGTGTTCGTATGCATG	ref_4832_RC	49	16	66	42	19	50	23	52	16	43
TGTTCATGCTCCGAAC	ref_4832_RC	128	49	190	139	67	107	63	131	60	114
GTACACTGACGGTCAA	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
CATGCGTGATATGCTA	ref_4832_RC	0	0	0	0	0	0	0	0	0	0
TTCCCCCTTTTCTTCC	ref_4832_RC	60	18	77	74	27	56	36	72	21	53
CGGTAGGTATCTCTAC	ref_4832_RC	159	62	240	189	69	181	62	180	57	170
ATACGTCAGCCGTAGT	ref_4832_RC	205	57	222	203	76	190	85	196	85	196
CGCACGCTTATAATAC	ref_4832_RC	88	44	97	81	46	88	48	85	51	74
CTAAGGAAGGGCATAG	ref_4832_RC	47	16	36	23	12	35	15	34	20	40
GATACGATATCAACCG	ref_4832_RC	47	24	66	50	11	56	21	47	15	44
TTCAATTGCGTTTTGC	alt_5803_new	40	102	59	62	106	55	119	45	127	58
TTCTGGATTTCGTTGA	alt_5803_new	32	76	49	49	62	50	86	40	92	43
AGCATTTCCAGGAGGT	alt_5803_new	85	126	90	65	133	57	108	71	127	67
CGAAGTTTTCCCCCAC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TCACTGTGAAGAAATG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GCCTTGAGAACCACGC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CCTACGGCCGTTATTT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TTTTGCAATTACGTTT	alt_5803_new	5	13	11	13	22	11	12	11	10	10
TATATTTGGGCCCTGG	alt_5803_new	30	36	33	24	34	21	40	16	32	22
GCATGCTTGTAGCGAC	alt_5803_new	34	55	21	27	60	18	49	32	71	18
TTTACTATATTTACGG	alt_5803_new	14	15	20	12	16	16	14	8	16	9
CTACGGGGGTGTCTTA	alt_5803_new	15	15	7	11	19	12	20	10	13	7
GATAGTGCTGTACCAG	alt_5803_new	24	42	41	19	57	16	62	17	49	24
TATATTTCTCCTACAG	alt_5803_new	48	56	38	36	47	26	70	39	40	30
CCATTTGGTGCGTAGC	alt_5803_new	3	10	15	5	8	1	9	3	5	1
CTCGTTCTCTAAAGTG	alt_5803_new	25	78	37	25	73	26	83	24	78	25
GCATATTACAACCGAA	alt_5803_new	71	125	84	79	126	60	139	70	93	72
CCCCTATAAATTAGAT	alt_5803_new	15	42	22	20	28	18	32	13	26	20
TCAGTACGTCTCCATG	alt_5803_new	27	56	27	17	58	32	58	14	60	23
GCAACCAAACCAATTA	alt_5803_new	25	45	22	22	44	20	48	13	34	20
CCAACAGTCCCCTCTT	alt_5803_new	12	24	21	16	35	20	26	20	33	19
CATGGTTGCGTACAAT	alt_5803_new	27	31	24	23	29	24	44	11	35	22
TTATAGCGGCGGACAG	alt_5803_new	37	91	47	39	88	41	86	47	92	40
ATGTTCGTACGCCATG	alt_5803_new	33	55	55	48	66	32	64	32	87	49
TCTGATCAAATCCACC	alt_5803_new	16	47	31	20	38	25	31	18	34	26
GGGCCTTGTGACGATC	alt_5803_new	13	37	25	19	26	22	38	19	36	18
CTACGGTCGTTCCTGA	alt_5803_new	15	31	26	12	16	16	28	15	30	11
CCGTGTTGTCCAACGC	alt_5803_new	3	3	4	6	4	0	7	3	3	1
CCATCTTCGTGAAAGA	alt_5803_new	48	84	64	37	113	46	115	43	99	48
ACATCTTCGTGAAAGA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TAGCGACGCACGAGCG	alt_5803_new	8	17	6	9	11	13	12	7	21	10
CTTCTCCCAAATATGA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTATGCGAAAC	alt_5803_new	0	0	1	0	2	1	0	0	0	0
CCCCTTCGCGTGATAC	alt_5803_new	39	77	34	30	51	39	64	35	54	33
GATACCACGATAAATG	alt_5803_new	17	40	14	14	28	10	39	12	50	12
GTAAACTGCTTGACAG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GCGCTTTCTTCAGGTG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TGTAGGTTTTGCTTTT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TTAATCTGATCTTTTA	alt_5803_new	6	9	17	5	9	6	9	12	10	12
CCACTCGTAATTCACG	alt_5803_new	3	23	4	5	19	4	15	7	23	5
ACGTCTGTGTTCCTTA	alt_5803_new	8	23	18	13	15	15	21	19	24	9
ACTTTTCTAAACTTGA	alt_5803_new	39	67	46	34	72	37	76	35	68	28
TATACCAGCTCAGAGA	alt_5803_new	51	64	80	61	63	47	103	35	99	40
GCGATCGAGGTCACGG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TTCCCCTGCGGCTCGT	alt_5803_new	14	31	16	12	22	8	20	7	30	21
CTTGCCTAGTCACCAG	alt_5803_new	31	70	51	35	97	41	95	30	76	50
AATTTGCTATAACGGA	alt_5803_new	25	38	24	27	41	28	33	22	32	14
CATGTGGGCCTAGTAG	alt_5803_new	6	10	7	8	10	8	12	7	14	9
GTGCATGGATCTCTCA	alt_5803_new	32	51	36	20	49	23	64	36	68	26
CGATATGTAATTCATT	alt_5803_new	4	8	10	6	5	4	3	5	6	5
TGCTTCATATTCTTGT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TCGTATAATACGAGCT	alt_5803_new	2	8	2	4	6	3	2	2	11	1
AGGCCAGAACGTATAC	alt_5803_new	4	14	15	9	28	8	23	7	16	4
TGGCTGCACCCGCTTT	alt_5803_new	50	71	63	52	74	35	78	45	74	39
GTCCTAGGGTGTGAGG	alt_5803_new	5	23	8	5	14	9	15	6	28	4
CATGTATCTTGGATGT	alt_5803_new	15	17	13	9	22	14	30	11	14	13
TTAAGATTTTGGCATG	alt_5803_new	20	43	38	22	58	24	52	22	43	28
ACCGGTATCGCGTGTC	alt_5803_new	34	53	37	33	64	25	76	26	66	19
CCCTACCTGTTTACAT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GGCCTCCTTTTAGCTA	alt_5803_new	10	21	6	17	17	6	17	13	16	4
AACATCGGATCCCCTA	alt_5803_new	6	12	7	3	12	4	7	9	4	5
AGGGGCCGCGCATTGA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TTTTCACTGGTAGAGC	alt_5803_new	10	17	21	8	22	14	35	12	42	10
AGTCGGGCCGAGGCTA	alt_5803_new	34	39	40	36	46	36	37	31	44	28
TACTTACGTGCAGCCC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TTGAAATGGACTAAGT	alt_5803_new	10	32	19	14	32	13	22	13	22	11
TCGCAGGCTAGTCACT	alt_5803_new	83	83	78	73	104	76	108	54	101	75
TAAACGTTCCACACAG	alt_5803_new	5	8	3	3	7	0	8	3	5	3
CAGTGCAGTCAAGTCA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CGGACCTATCCCCCTT	alt_5803_new	4	8	11	9	20	14	17	7	10	1
ACAATTCCTCGGTTTT	alt_5803_new	26	35	38	29	34	35	33	16	52	25
TTGCACCTCTGCGCGT	alt_5803_new	21	42	32	26	54	20	48	21	42	32
ACCGAGACTGCTTTGT	alt_5803_new	11	13	18	9	27	13	26	14	28	20
CCTTCGAGCACCTTCT	alt_5803_new	42	50	43	41	52	36	44	37	55	26
TTCCAACGCATGCCAT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GAAAACGTACCCCAAC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
AGGTGCGCAAACTAGA	alt_5803_new	4	17	2	7	16	6	13	6	11	6
CAAAGCAATGCCTCTA	alt_5803_new	86	97	102	78	101	60	120	52	101	56
GGGTCCAACGGAGTTA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TTAATCTTCGCGTCCG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GTGCGTCGTTCCGGTT	alt_5803_new	10	12	13	21	24	16	25	13	21	11
GCAGCTTCCGGACTTT	alt_5803_new	4	5	2	3	5	9	10	2	8	6
CTGCTCCGCCGGGTAT	alt_5803_new	5	7	8	3	7	4	5	4	3	5
CGCACTCCCGCCGCGA	alt_5803_new	3	21	5	0	22	3	18	3	21	4
TCACGAGTACAGGATA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TGCATCATCATACCCT	alt_5803_new	4	2	3	6	4	3	4	0	9	7
CGACATATGCTATAAC	alt_5803_new	14	20	21	11	22	7	13	13	11	14
GCTAGGACCTCCTTGA	alt_5803_new	85	119	102	93	145	74	160	62	138	68
GCCCGCTCAGTGCATG	alt_5803_new	9	14	18	7	11	5	6	5	20	7
CTGAGTCGGGTCTACT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CCTGCATGTTCATGCC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TGGGTGTGTTTATCTT	alt_5803_new	25	44	54	27	46	42	57	39	57	22
CTCGTACAGTAAGAAT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CGTTAGGCGATGTAGT	alt_5803_new	5	13	15	4	6	4	14	4	13	9
GAGGTGTCGTCGTTTA	alt_5803_new	22	27	23	10	34	11	32	19	32	13
GAGCGCTGGGTCAGCA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CTCAGTCTACTCCTCA	alt_5803_new	28	66	49	41	87	26	72	49	75	27
CTGTCCTGATGACTCC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TCCGCATGTTTCTTTG	alt_5803_new	16	30	22	15	19	17	31	13	23	12
TTATTTGTCCCGAGTA	alt_5803_new	19	37	22	24	38	19	49	20	22	13
AGGCACTAATACAGAT	alt_5803_new	75	97	89	68	134	55	130	71	142	73
ACTAGCATCAGCTGCG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CGCAGTGGCGTTTCGT	alt_5803_new	5	7	6	8	5	6	8	4	4	9
GTGTTTCGCGATTCGC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
ACTGCGTCCGATTTAG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GTAGCGATCGCCTATT	alt_5803_new	6	24	17	7	20	12	22	18	29	10
CGCCCAGCCTCACTTG	alt_5803_new	12	18	12	14	26	16	19	10	19	12
TTGATCTTGGATCCGA	alt_5803_new	65	78	59	68	76	61	97	64	87	46
AGCATCATTGCTACGA	alt_5803_new	21	21	19	11	31	13	22	18	25	11
GGGTGTCGTCTTGGAC	alt_5803_new	11	13	15	13	13	12	19	5	17	16
GCATAATACAACCGAA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GTGAGTACTTCCTAGA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GCCGGTGCGAGGTTCA	alt_5803_new	9	14	27	14	18	5	16	15	26	11
ACTTTTTTTTAGTGTC	alt_5803_new	22	35	28	25	50	21	40	18	44	29
ACTTCCTTATTCGATT	alt_5803_new	49	90	79	64	119	48	98	45	110	55
TTCCCTGTACCCGGCT	alt_5803_new	8	9	10	11	9	8	14	1	29	4
GACCTTGAGTTTCGCC	alt_5803_new	1	5	3	1	6	5	2	0	3	0
ATCGCCACACAGTCAG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TACATTTGCCCCAGAT	alt_5803_new	10	22	12	8	20	10	24	9	20	11
CCATAGCCTACACTGG	alt_5803_new	13	22	14	10	15	11	10	6	27	9
TCATATTACCCTTATC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TCGTAAACTCGCTGCC	alt_5803_new	17	38	35	16	42	22	43	16	46	33
AGAAACCATACATTCG	alt_5803_new	10	11	7	4	22	9	10	4	15	3
CGCCGTCACCTTAGGT	alt_5803_new	50	58	67	57	59	58	70	59	57	45
GACCCTATAATGCCAT	alt_5803_new	30	42	24	23	34	17	40	13	41	25
GCGGTCTCAAAGTGTG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CGACGTCCGCGCTAGG	alt_5803_new	23	37	27	23	44	24	49	22	45	16
CACTCCCGGACCTGGT	alt_5803_new	0	0	0	0	0	0	0	0	0	0
CTTTACACTGCGGGCC	alt_5803_new	12	102	21	13	87	15	87	8	115	7
TTCTTGAAACCATGGT	alt_5803_new	26	38	39	30	52	30	43	39	69	40
TGATTTACGTGACCCG	alt_5803_new	0	0	0	0	0	0	0	0	0	0
AGTAGCTTTTGAATTC	alt_5803_new	0	0	0	0	0	0	0	0	0	0
GGTTGTAGCTCATTCG	alt_5803_new	3	7	5	2	13	7	12	6	6	7
TATTTGATCTCGTGAG	alt_5803_new	4	7	4	1	2	2	3	2	4	3
TTCATAGGGTATCGAT	alt_5803_new	40	76	60	38	57	33	68	44	70	46
CCCGCTCTACTCACGT	alt_5803_new	1	32	5	5	21	7	34	6	17	4
TGGTATTTTCTCGTTA	alt_5803_new	0	0	0	0	0	0	0	0	0	0
TGGGAAGCGTTCCAAT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
GATACGAGGTGCGAGT	ref_3878_RC	21	19	31	30	23	33	33	27	26	24
TCAGCCTGGTGTTTCC	ref_3878_RC	10	13	9	7	16	12	9	4	7	9
TAATCGACACGCGCTT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
ATTAAAAGCAACATAC	ref_3878_RC	8	4	2	5	6	7	4	4	10	7
TATCGGTAAGCGACGT	ref_3878_RC	33	32	36	35	31	29	32	31	41	34
CGCTACGAATCAGGAT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
TTAGCAGGTTTGGGAT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
TACTGGGATCGCCCGA	ref_3878_RC	58	37	62	71	61	50	46	64	62	61
CTCAATTCCAAATTTC	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
TAAGGGTCGATGTTTA	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
CTATTCTAGTAAGTAG	ref_3878_RC	0	1	0	0	0	0	1	0	0	0
ACCTTCTGTGGATACT	ref_3878_RC	67	70	82	71	68	74	78	54	90	61
CGCTTTCATCTTGTTC	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
AATTAGCCGTGACGGT	ref_3878_RC	3	6	7	3	6	6	4	5	4	4
CGTACCGCGCAATGGT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
CCGGACTCTGATCCTC	ref_3878_RC	0	2	4	1	4	1	7	1	1	0
ACAGTCAGATAGATCT	ref_3878_RC	47	48	46	57	52	36	62	31	57	28
TTACAGGGACTATCGT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
TAAATCCGAGAGGGGC	ref_3878_RC	7	11	9	10	12	10	20	10	12	6
CATTGAGGATCGGTGG	ref_3878_RC	14	18	19	16	34	24	23	19	32	21
GCACGGCAACCAGCGT	ref_3878_RC	10	3	2	11	4	15	11	6	8	7
CCAGTCCACAGCTTTA	ref_3878_RC	22	11	19	11	22	11	22	18	26	12
GACATTTCTTTCTTTA	ref_3878_RC	23	20	21	19	14	20	16	21	13	12
TAAATAATTATGGTTC	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTCTTGACGTGA	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
TTGCGTTCGCCGTACC	ref_3878_RC	17	9	15	13	9	8	9	6	12	8
GTTCCTATTTGCCCCA	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
GCAGCAGTTACTTAAC	ref_3878_RC	6	5	7	7	3	9	10	4	6	2
TTTGCTAGCAAGCTAG	ref_3878_RC	30	27	41	23	29	24	37	29	29	23
CGCCCTAGCAAGGACT	ref_3878_RC	9	3	2	4	2	5	5	1	7	7
GGCCTGAGCCATCAGC	ref_3878_RC	24	37	36	45	36	35	41	33	44	20
GCGCTATGTTCCCGCT	ref_3878_RC	22	20	18	19	20	17	12	16	15	10
TGCTTCAGTATCTAAG	ref_3878_RC	12	18	20	12	27	21	20	13	20	12
GTCTCGGAACACTTGG	ref_3878_RC	5	5	6	5	3	4	2	3	7	3
CGACGTGGGCCATCGC	ref_3878_RC	15	9	8	11	11	9	16	8	10	11
TTGTTCTCCCTGGCTG	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
TGCTCTATCCTCCAAT	ref_3878_RC	16	11	17	10	14	13	14	14	15	5
GTGAGTTTCTGACGTA	ref_3878_RC	2	1	2	0	7	3	5	0	1	4
CTGGAAGAAAAAGGCT	ref_3878_RC	4	7	6	8	2	4	9	8	4	6
GCATATTCATAGAGTA	ref_4170_upstream	268	171	287	251	180	221	177	221	201	216
TTCAGGCGGTAGGCTC	ref_3878_RC	40	30	51	37	45	43	41	49	35	36
CCAATCATGGTTCATT	ref_3878_RC	5	8	8	12	11	8	9	7	5	6
GTCTAGGCATTGAAGA	ref_3878_RC	0	0	5	0	5	4	3	1	2	1
AGCCGTCTTCGGTGGC	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
ATGGGTGAGCCACAAT	ref_3878_RC	37	40	49	41	48	36	14	30	41	22
TCTAACCTTGATGATG	ref_3878_RC	8	11	14	8	14	5	14	13	11	11
TCTACTTGGTCAGCGT	ref_3878_RC	0	4	9	7	6	4	2	7	8	3
TCCCGCTCTGTACGCT	ref_3878_RC	18	28	27	19	24	24	23	26	36	20
TTGCCACGGCTCTTCG	ref_3878_RC	33	38	60	40	48	30	45	33	73	42
ATATACGATGTGCTCT	ref_3878_RC	21	18	13	20	13	16	17	13	16	10
ATCAGGCTTCAGCTCT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
CGGTGCTGAACTCTTT	ref_3878_RC	4	3	4	4	1	2	2	4	0	4
CAATTTCAGTTTTGGG	ref_3878_RC	48	35	47	30	34	21	28	31	31	30
GGACTTGGCCCGTTAA	ref_3878_RC	7	10	2	4	5	2	3	3	4	6
CGTACTGTATGAGGCC	ref_3878_RC	22	24	41	24	19	25	35	19	33	22
AAAGGGACGCTCGTGA	ref_3878_RC	39	43	57	67	28	66	40	48	43	47
TTGAACTGTTGCGATC	ref_3878_RC	53	39	67	51	59	57	53	45	48	42
TAGTCAGGCGGTTGTG	ref_3878_RC	1	8	7	1	1	4	6	5	6	3
GCGAGCTAGTTTCTAC	ref_3878_RC	12	16	9	10	5	15	10	14	17	6
TCTAATTGGTGGGCCG	ref_3878_RC	5	4	3	5	1	1	4	3	1	4
TCAATAGTTTTGACTC	ref_3878_RC	36	50	31	47	35	23	48	40	32	29
AATTAGCGGATTACAC	ref_3878_RC	48	24	62	61	31	39	41	49	25	48
GTGATTCAGGTCACCC	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
AGACTACTCCCTTTAT	ref_3878_RC	6	31	14	5	28	6	22	3	25	4
TGCTTGATGCCAGCCA	ref_3878_RC	11	11	13	7	7	14	4	3	10	9
TAACCTCAGCAAAACG	ref_3878_RC	2	5	2	0	3	5	3	1	3	5
ACGGAAACGTTCGGCT	ref_3878_RC	12	7	8	9	5	11	5	11	9	12
CCTCGGAAACTTTCTA	ref_3878_RC	16	16	8	16	13	11	10	13	11	8
TCAGTTGGGCATCACT	ref_3878_RC	0	0	0	0	0	0	0	0	0	0
TGGGCGTGTGATACTT	ref_3878_RC	85	82	97	72	88	77	67	77	96	74
TGTGGTTTCACAGCAG	ref_3878_RC	35	19	29	33	26	24	24	30	27	17
TTTAGTAATTTTCTTT	ref_3878_RC	25	16	29	35	22	21	18	27	22	22
TTTCGTAAACGTTGTT	ref_3878_RC	7	5	7	6	3	9	13	10	5	6
GCTTGTTTCATAGGTC	ref_3878_RC	10	8	8	12	10	8	12	3	10	11
CTACTCAAATCGATTA	ref_3878_RC	58	47	73	70	46	49	41	40	47	43
ACGGACGGGTAATATT	ref_3878_RC	55	51	69	45	55	41	57	63	44	40
TGCGCAGTCACCAATT	ref_3878_RC	37	31	39	29	27	31	40	47	35	36
GTAGCAAACGCGAGCG	ref_3878_RC	9	2	2	3	2	1	5	4	4	2
ATGTATTTCGTCACCG	alt_13_fdr	407	163	553	481	176	417	166	417	165	393
AAAATGTAATATTCAG	alt_13_fdr	17	2	17	12	5	6	6	6	0	10
ACCTGACGTATACGAT	alt_13_fdr	5	3	5	7	6	10	3	6	0	5
GGGGTCTACACTGGAA	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTACCGGACATCT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTCAATCGTTGC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCGCCCATGCCCT	alt_13_fdr	31	21	35	29	16	25	17	16	14	20
TCTAGGCGTAACATCC	alt_13_fdr	7	7	12	12	4	8	1	7	2	8
CATAATAAAGCATGCG	alt_13_fdr	380	155	478	392	137	342	182	344	188	313
TGGCTAGGGAAGCCGT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CTGATGATTGACACGA	alt_13_fdr	209	80	308	291	63	231	77	221	90	209
ATTCATTCGGTTGAAT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CACAACGTCTCCCGGC	alt_13_fdr	68	30	71	85	36	69	38	56	43	45
TAAATGATGTTGCCCG	alt_13_fdr	402	144	523	435	139	358	131	414	155	358
TTATACTTACTTACAT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AAATAGAGGGAGGGCG	alt_13_fdr	18	13	20	24	12	22	9	24	7	13
ATTACAGATTTGGTCG	alt_13_fdr	211	90	279	205	85	212	94	205	86	165
TGTACTCGATTGACTA	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACCCAATCCTTA	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TTGCACGGTGGAGCGT	alt_13_fdr	86	33	107	85	18	66	32	65	31	63
GGATACGTCTCCCAAG	alt_13_fdr	109	41	141	123	27	100	34	116	49	96
CGTATGTCACCATATT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AGCCAAATTAGTAAAT	alt_13_fdr	27	11	44	37	30	33	25	29	29	39
CGCGCAAAATTTGTTT	alt_13_fdr	170	65	201	193	57	178	79	133	49	149
CTCCTATTAGTGATCA	alt_13_fdr	301	169	442	352	180	325	180	313	171	269
CTTCTGTTCAATTCCG	alt_13_fdr	67	28	88	62	25	76	41	66	20	65
GTGGTAAAGCAGACAA	alt_13_fdr	11	2	19	9	5	8	4	11	5	7
CTCCGAACTGTCCTTT	alt_13_fdr	51	12	50	46	22	40	22	49	14	44
CTGACGATTTGGATCT	alt_13_fdr	215	72	250	247	74	224	78	208	77	213
AATCAGTCCGCCGCCC	alt_13_fdr	8	4	24	18	6	10	5	10	1	5
TCCCGTCAGGGGGAAC	alt_13_fdr	104	43	133	162	58	81	65	103	50	82
CGTGGATGTTAGATCA	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTGCGTCTCGAAG	alt_13_fdr	96	34	150	91	36	86	42	88	44	94
ATTGCGTTCATCTCTG	alt_13_fdr	175	71	240	163	69	188	82	169	57	153
ACATTTGTTGCGATTT	alt_13_fdr	70	29	87	68	27	68	33	79	33	64
GTCAATCTTCAGATGT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTTGGGACGGGCC	alt_13_fdr	148	56	169	168	46	132	48	157	55	107
CCGGGCACGGTGGTAC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
ACCAACTGCGCTACTG	alt_13_fdr	6	6	6	9	1	3	1	7	4	3
ATCAGCTCATATGGTT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
GCGATTGAGCTACCTC	alt_13_fdr	64	28	103	93	33	88	30	80	41	78
CTCTAACTCCTGATGG	alt_13_fdr	63	21	71	50	24	54	17	53	30	53
TTTGAACTCCAATGGA	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCATGCAGTACTC	alt_13_fdr	337	104	358	363	133	312	143	307	138	290
TAGGATTCGACATAGG	alt_13_fdr	111	42	160	137	46	105	42	113	51	117
TAGTTCTCTGCCAATT	alt_13_fdr	19	16	28	34	16	26	18	26	22	24
TCAGGGTCGTCGATTT	alt_13_fdr	13	7	17	14	3	9	5	11	2	13
TTTCTGGTTCCAACGC	alt_13_fdr	105	37	125	90	36	91	19	85	37	88
TGCGAATTCCCAAGCC	alt_13_fdr	134	52	183	159	57	140	61	142	56	143
CTACTACTTTAGTTTA	alt_13_fdr	84	34	122	101	48	106	41	93	40	79
GAGAGGGGCAACAGCT	alt_13_fdr	40	14	50	50	19	40	17	41	24	46
TGGCGCAGAAACGAGC	alt_13_fdr	2	0	2	4	2	8	1	6	2	5
ACTCGTCTTAGTCCTA	alt_13_fdr	96	34	104	101	45	83	51	99	39	68
TCTCTAGATTGCCCTT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTTTACTACGGTT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
ATCTAGCCGTGAACCC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTCGTGTTGCTTC	alt_13_fdr	225	95	267	275	76	202	86	211	104	210
CGAGCGACCGTTCGAC	alt_13_fdr	22	11	18	17	13	15	7	16	20	14
TTTATTTTCCCCCCTG	alt_13_fdr	66	29	71	92	37	69	32	52	30	59
TATATTGTCAACAAGT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGCGTTTGCACAT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AATGTACGCCATTTAC	alt_13_fdr	119	65	146	129	65	129	67	132	51	111
ATAAATGGCTTCTCGA	alt_13_fdr	77	24	96	79	30	87	31	89	35	76
TGCACCACACTTTTCA	alt_13_fdr	118	79	173	169	63	123	54	139	62	126
TCCAGGTGCCTTTCGG	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTGTTATTCCGGC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CGGTGCTGGGCAGGAT	alt_13_fdr	14	7	25	13	5	19	12	18	5	17
TGCGATTGAGTTAGGC	alt_13_fdr	323	129	348	359	122	308	111	282	101	249
CACCCGACTCGCCGTT	alt_13_fdr	72	47	105	106	74	80	67	71	62	61
GTATCTTATCTGTACG	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TATCAAGGGCATCTAG	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
GCGCGGCCGGAGTGTT	alt_13_fdr	187	69	211	187	78	169	78	160	79	152
ATTGTTGTTATGGAAT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
GCACAGCACGACTCTA	alt_13_fdr	61	30	92	100	32	74	18	56	31	56
TATAGTCTCACGATCC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CATCCGGGATATAACC	alt_13_fdr	2	1	3	1	0	1	1	0	0	1
GGCCGTATTCAGCTCG	alt_13_fdr	32	14	44	38	14	44	23	41	14	40
GCTAGCCAGATAATAT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
ACGACCCCTGGTCTCC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CTCATCTACGAAACTG	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CCCTACCGAATCGATT	alt_13_fdr	40	24	65	60	43	48	26	39	30	52
GCCGTAATCGTTACCT	alt_13_fdr	176	90	279	220	101	185	86	207	95	177
TTTTTCCGGTCAATCC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
CGTATGGGGATGTTGT	alt_13_fdr	32	13	54	38	13	29	18	45	7	39
CTCATTGTGGTCCTTC	alt_13_fdr	50	21	57	52	20	46	12	34	19	33
TTATCTAGTACCTTGG	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AGTACTCTTGGCTTCG	alt_13_fdr	42	15	57	54	19	40	27	35	21	31
GCCAAAGCTGGCCCGT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCTAAGAATATCC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TCACGGTTAGCTATTA	alt_13_fdr	70	28	69	64	18	62	15	65	22	53
CGTTGCGCCGTGGACA	alt_13_fdr	111	46	134	115	59	105	49	96	47	80
GGAATTTCGTTCTTAG	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTCGTGTACATC	alt_13_fdr	126	41	183	153	75	114	42	115	65	104
TTAGTTGGGTTATGTT	alt_13_fdr	19	8	15	18	8	5	11	14	8	11
AGATATGCGTTTCCGC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
GGCGAGACGCAGAGAA	alt_13_fdr	99	32	92	99	30	85	32	86	29	74
TATGTCCAGGGCCGCA	alt_13_fdr	117	52	178	126	60	124	45	131	44	97
AGGCCCCAACGCCGAT	alt_13_fdr	56	14	48	52	14	41	20	38	24	46
AGCATTGTATAGCTAT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
AACCGTTAAACCATGG	alt_13_fdr	17	10	27	27	16	16	11	23	14	19
GGATTATCCTTCGTAA	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCGTTATTTATCT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGTTTTACTAGCA	alt_13_fdr	18	3	22	20	5	13	5	15	10	18
GTTATATCCGTGTACA	alt_13_fdr	98	33	74	65	39	76	42	64	32	63
ACAGCGGTGCTTGGCG	alt_13_fdr	102	35	108	98	43	61	40	92	41	71
GTATCACAGTCTAGAA	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
GCACAATATCTTGATC	alt_13_fdr	157	72	192	185	73	156	64	154	73	138
CAGTCAATTAGGCACG	alt_13_fdr	11	4	22	15	7	18	10	18	2	10
CCCTTCCCAAGTTACT	alt_13_fdr	80	25	94	103	44	76	39	84	37	71
TAACTTCGCCGTCGTG	alt_13_fdr	37	26	52	59	29	26	20	42	26	37
CTACCTGGATCACTCA	alt_13_fdr	9	11	17	13	7	9	14	7	14	13
ATGTGCTTATCTTAAG	alt_13_fdr	30	14	27	38	20	38	12	29	20	20
GACTACTCTTTACTGC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCCTGAAACGAAC	alt_13_fdr	89	29	95	86	27	74	23	64	31	65
CGGCTCATTGCTACTG	alt_13_fdr	24	14	24	19	13	22	12	32	13	30
ACTGAACTGGTGTTTC	alt_13_fdr	55	22	92	62	32	51	40	58	41	53
CAACCTATGAGTTCCG	alt_13_fdr	72	42	85	96	41	73	31	93	45	59
ATGTAATCTATCTACA	alt_13_fdr	93	42	117	113	38	105	39	103	49	86
TACATTACAGGGAAGC	alt_13_fdr	54	18	83	59	23	53	37	60	28	65
CCGATGAGAGGTCTTC	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
GGGATAATTGGATAGG	alt_13_fdr	61	21	65	66	20	52	25	66	26	51
ATTTCTTTTCTGCCCT	alt_13_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGAAGGTATCAGT	alt_13_fdr	90	27	84	78	36	80	29	65	32	50
TATGAATATTACCGCC	alt_13_fdr	67	25	94	70	34	65	29	66	28	60
ATGAGTAAACCGCATG	alt_13_fdr	48	8	45	49	12	35	17	27	20	46
TACACGTGTCCGTCCA	ref_4000_upstream	12	20	24	12	31	14	35	14	27	9
TCATGTCTTTGTTTCT	ref_4000_upstream	90	68	78	71	74	88	89	79	84	58
AACCGACTTTGCAACC	ref_4000_upstream	30	41	39	59	86	37	69	23	92	35
TGGAATCCGCACATGT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CATTATGTACCCAAGG	ref_4000_upstream	22	26	20	21	18	24	22	12	34	9
TTACCGCTGCACACTC	ref_4000_upstream	10	15	15	8	10	20	16	8	17	13
TGTAGAACTTCGTCGA	ref_4000_upstream	8	9	9	5	3	9	7	2	7	6
GGTCAATCGCTAATAA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTCTTGCTAGGCC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GTATATTAGTACATCG	ref_4000_upstream	95	107	124	94	130	63	130	104	109	82
CGTTATGGCACCTTCT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CGACTTGCCATCAGTG	ref_4000_upstream	6	6	8	4	11	2	13	9	10	5
TATCTTCTTGTTGTTA	ref_4000_upstream	5	6	10	5	7	8	9	8	6	4
CAGCAAACTTAACAGC	ref_4000_upstream	11	9	9	6	16	7	17	11	17	8
TTAGGAGACCCCATTT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGGTTCCCCTCGT	ref_4000_upstream	15	18	16	16	21	10	28	16	26	19
CCGATGATCAGGTTGC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GTTGATTCTAATCATA	ref_4000_upstream	31	50	36	33	43	39	34	21	35	24
AACGTATGCACTCAAC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TAAACTGTTGGCATGG	ref_4000_upstream	68	79	89	78	96	70	84	77	93	66
GTCGCATAACTGCTTG	ref_4000_upstream	88	98	89	72	90	81	96	75	88	77
TTTCATGAATACCTGG	ref_4000_upstream	14	15	12	9	13	9	15	8	15	5
TGTGTGTTGTGTAAGA	ref_4000_upstream	18	50	27	26	60	18	42	33	38	30
GCTGTGAGAACGCTCC	ref_4000_upstream	18	25	24	17	29	16	40	21	20	15
TCTCATTGTCACTCCT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TAACCGCAGAATGGTG	ref_4000_upstream	11	4	7	7	7	3	6	3	12	5
TGCCAAGCACGCAGCG	ref_4000_upstream	1	4	3	2	6	3	4	1	6	0
CGGCGATGGCTAGCTT	ref_4000_upstream	22	36	25	25	30	36	25	24	24	19
GAGATTTACCTGATTT	ref_4000_upstream	11	24	16	18	20	16	24	12	28	13
ACCGTTCTGTTCTTCA	ref_4000_upstream	12	7	9	7	19	7	12	9	19	12
ACCGTTGGGCCGGTGC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGCTATTGGACTA	ref_4000_upstream	44	82	55	41	90	57	80	48	89	55
TAATAACTGGCGTTAT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCTGCATCGCCCG	ref_4000_upstream	7	13	23	11	21	10	11	13	12	8
TGGCATGGTCACATCC	ref_4000_upstream	28	34	24	26	26	19	31	28	24	22
TCCTAGCGACGAAAGG	ref_4000_upstream	77	128	105	98	136	75	126	88	149	80
TATCATTGGAGTTTTT	ref_4000_upstream	26	35	28	27	34	16	40	27	42	26
CTGTATTTCTGTTTTT	ref_4000_upstream	202	213	244	197	208	171	189	172	214	179
CGTAAAATATCAGTTG	ref_4000_upstream	40	61	32	29	67	48	67	27	57	31
CCTTGTAATTACGCCT	ref_4000_upstream	10	27	16	16	38	22	40	22	27	18
GGGTTAGCGGTATCTA	ref_4000_upstream	46	51	56	47	70	49	67	38	77	42
CGCTTGATTAGCTCAC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TAACGTGTGATTGTTT	ref_4000_upstream	19	19	19	22	15	15	26	15	25	14
CACGTTCCTTTTGTTC	ref_4000_upstream	34	64	54	52	70	35	70	45	48	36
TTCTGGCGCTGATGGG	ref_4000_upstream	19	31	22	24	35	22	32	24	36	25
TGTAGCCGACCTTGTC	ref_4000_upstream	12	16	14	7	14	3	16	9	12	7
GGTTGTCGAATAATGA	ref_4000_upstream	25	46	32	35	28	26	26	27	33	14
CATGGGTGCGATTTGC	ref_4000_upstream	3	4	3	5	6	2	3	3	5	3
AAATCGGTGCCCTCAG	ref_4000_upstream	15	22	36	27	25	9	19	16	26	18
GAAATTAGCCGAACCA	ref_4000_upstream	22	17	25	12	20	12	16	15	13	12
CGGTTCATTGGGGTCA	ref_4000_upstream	60	63	71	59	74	50	59	43	59	51
GGTCTTATCTGCTGGC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GAATTTTGCTAGTAAA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CAACCTTCATGAGCTC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTTCATTAGGGCTCTA	ref_4000_upstream	34	34	32	28	51	31	27	35	36	25
CATGTCCCAGCGTGTA	ref_4000_upstream	4	11	7	5	9	7	11	3	11	3
TGGCAGCGAGACGCAT	ref_4000_upstream	8	16	17	16	25	12	22	15	35	11
TTGGCACAGCCTCTTA	ref_4000_upstream	7	10	4	13	18	3	13	6	9	13
GGGGCTCGCGTGCTAA	ref_4000_upstream	66	60	77	36	68	55	70	36	64	50
TGAGGCACTGTTTGGA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GGGAGGTATTCGACTA	ref_4000_upstream	18	28	25	18	24	18	32	27	27	31
AGTTACATATTTTGGT	ref_4000_upstream	65	77	78	78	78	65	89	65	101	66
AAACAATTTCTGCCAG	ref_4000_upstream	4	1	5	3	9	9	9	6	4	7
CTTTTTTTATGATGTT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GATCTCAGATTTCAGT	ref_4000_upstream	67	109	98	69	104	60	97	47	107	78
CAATTTTATCCTACCA	ref_4000_upstream	2	1	14	4	11	8	12	6	2	5
CTTTTTTCAGTCTAAC	ref_4000_upstream	80	104	81	72	136	80	135	71	138	65
TATCCAGGCCTATGTA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
ATCGATCCATCGTCTT	ref_4000_upstream	23	38	40	27	49	31	41	20	37	29
TCAGGTATATAGCCGA	ref_4000_upstream	8	4	20	6	15	8	4	8	13	8
TTCTTCGGATTCCTCT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTACAGACCATGC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTCACTTCCGGCCCCT	ref_4000_upstream	16	26	12	5	16	9	16	16	14	16
CGGGGTCCCGACGGTT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TCGACACTTTCAGCGC	ref_4000_upstream	3	3	2	2	4	2	4	2	3	3
ACCTTCCCCGCCCTAT	ref_4000_upstream	49	111	51	48	94	32	144	34	117	37
TGCAGCAAGTTTCTGG	ref_4000_upstream	3	5	4	8	8	3	3	3	5	3
CGGTTGATATAGGGTT	ref_4000_upstream	67	98	79	68	108	68	103	66	101	59
GAGTTCGCCAGTAGTG	ref_4000_upstream	11	26	19	8	28	9	26	12	16	10
TCCTATTGTTCATCAA	ref_4000_upstream	5	15	15	11	6	6	13	11	15	8
GTCGGCCAGCCTCGTG	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TACCTTAATCCGAAAA	ref_4000_upstream	35	47	33	38	39	29	45	34	54	39
TAGTTGGTCGGAGCTG	ref_4000_upstream	3	2	4	4	5	6	6	3	12	1
TTATTTTTTGCGACGC	ref_4000_upstream	19	30	19	17	18	17	38	14	22	16
ACGCATTCTGTCGTAG	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GGCATCGCCTGCTGCG	ref_4000_upstream	52	89	60	47	71	44	91	58	54	43
TGAAATTCCGTTGCAT	ref_4000_upstream	6	12	10	13	11	6	13	6	13	5
GACTCTACGTTATCTC	ref_4000_upstream	2	6	3	2	8	4	9	4	14	6
GGGTTGGTTACTGCCT	ref_4000_upstream	17	16	17	14	16	12	12	8	21	13
AGCTTCTTATGTTGGG	ref_4000_upstream	30	49	51	30	45	40	44	36	69	42
TCTCCGCTTGGGAGAG	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATATTTTATTGG	ref_4000_upstream	30	53	43	51	52	49	59	48	60	37
GGTTCACTTACTTTGT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TAGGGATTTTAGTTTT	ref_4000_upstream	28	23	25	38	38	24	47	36	37	38
TTTTCTTTGTATGCGG	ref_4000_upstream	43	41	47	40	51	41	63	42	51	37
CTTTGTACGTAGGCTG	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATTACTCAGTGA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCAGTTGGTTCGC	ref_4000_upstream	16	8	15	7	4	7	6	8	8	12
TATACTCCCGGTTTAG	ref_4000_upstream	3	3	2	1	2	0	4	0	10	3
TCAATCTTCTGGAACG	ref_4000_upstream	32	32	31	36	25	32	47	38	37	28
CCGGTCATACGTACTC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTCAAGACTTTCTGTG	ref_4000_upstream	10	22	11	9	24	19	19	16	19	15
GTATTAACGTGGCCTA	ref_4000_upstream	12	18	18	12	18	14	26	14	21	4
GAATTGTCGAGCGTAC	ref_4000_upstream	24	38	30	23	28	28	43	28	31	23
TTTTGAGTAACCCCCA	ref_4000_upstream	1	1	1	0	1	0	1	0	0	0
CGCTCGGTGTCTTATT	ref_4000_upstream	12	15	27	20	24	18	15	13	23	16
GGATTTTTTTGATGTG	ref_4000_upstream	3	2	0	1	2	0	1	0	0	3
TATTTTGGTTTAGCCC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGCCATTTGGTTG	ref_4000_upstream	13	22	16	13	17	13	15	12	25	16
TAAAAATCATCTGATT	ref_4000_upstream	16	25	28	19	21	16	18	19	28	14
ATGCGTCTGACATTGT	ref_4000_upstream	29	43	36	28	36	18	59	29	33	22
TTATGGTGCTACTCTT	ref_4000_upstream	96	106	102	65	115	65	91	66	104	59
CAGGGGAATTCCGCAG	ref_4000_upstream	27	23	31	23	32	30	40	23	38	24
CTTCACGGAAAACTAG	ref_4000_upstream	8	15	13	7	12	5	10	7	11	6
CTAACAGTAGTGGGGG	ref_4000_upstream	18	14	22	13	20	18	18	11	22	13
CAAGAGATGTGACTAC	ref_4000_upstream	1	2	2	6	4	2	9	7	0	5
ACTTAGTTAGTAAGGG	ref_4000_upstream	40	42	36	37	56	44	61	45	78	52
CTTCTTATGAGGTATA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTCCTGATCTACC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGGCCCTTTATGT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTCTTCTCCCGTT	ref_4000_upstream	17	26	26	13	22	4	27	20	21	14
GTTAATTTTTAGCTAT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCTGTCTCGGGT	ref_4000_upstream	28	38	22	14	34	13	18	23	27	24
TTTGAATATTAGAGGG	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGCTAAGGTCAAG	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCATGTGAAATTG	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCAACATTCCGGT	ref_4000_upstream	21	15	14	10	16	3	16	8	18	11
TTCGGGAAATCATTGG	ref_4000_upstream	16	55	40	36	52	32	55	37	57	25
TGTGGAGTTAACCCAC	ref_4000_upstream	61	74	51	51	88	48	65	37	82	42
TTCACTCCTTAATCTA	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CGGCGCCTGTTCAATA	ref_4000_upstream	19	32	38	23	32	35	27	21	29	18
TGGTTATTAAGTTAAT	ref_4000_upstream	58	76	54	48	67	45	72	57	103	29
ACACCCCTCTAATGCC	ref_4000_upstream	1	0	2	2	3	3	2	1	3	0
TAGTCAAGGGGCAGTA	ref_4000_upstream	56	44	63	41	57	43	70	59	78	39
ATCGTCGTTATGACTT	ref_4000_upstream	11	8	4	5	2	8	8	4	11	8
TCTGACGGCTAGCCCT	ref_4000_upstream	20	35	31	25	36	22	42	22	47	18
CCTGTATCTTGTGTGT	ref_4000_upstream	5	12	8	3	21	5	12	6	18	5
GTTCTATAGGCGAGAA	ref_4000_upstream	33	49	58	35	51	26	55	42	67	32
CCTAACACATCTTTCA	ref_4000_upstream	39	77	47	34	84	29	87	37	93	39
GCTTTTTGGTACCGGC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
AGATGTTGTTTTGTAG	ref_4000_upstream	44	48	61	36	74	55	51	47	68	57
GTTTCATTGTGACGGT	ref_4000_upstream	11	19	7	13	5	8	19	13	15	9
CTACGTAATATAGCGT	ref_4000_upstream	0	4	4	2	5	4	8	1	6	2
AAAACGTCGACGTCTG	ref_4000_upstream	36	63	82	73	64	49	78	47	81	64
ATTTATTCTCTCCGGT	ref_4000_upstream	20	27	18	30	38	20	37	37	41	22
GTCACTCAGTGAAGGG	ref_4000_upstream	3	9	3	7	10	8	3	3	8	0
AAATAGAGGGGAGAGC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
GTACCGCGGACTATAT	ref_4000_upstream	8	13	11	5	23	14	22	11	21	6
CAGTGCATTGTCCACA	ref_4000_upstream	11	8	7	10	6	7	10	10	18	2
TTTTGTAGAGTGTCTA	ref_4000_upstream	11	15	11	9	17	10	21	6	19	8
GTCATCACGAGCTCGC	ref_4000_upstream	20	30	58	31	27	35	48	26	32	27
CTCTTGTCGAACTTGG	ref_4000_upstream	11	8	11	13	17	9	8	8	19	15
TGCGACCCAGGCCGGG	ref_4000_upstream	50	42	54	44	54	33	54	30	69	47
ATATCCGCTTGCGGGG	ref_4000_upstream	7	15	13	13	13	8	19	4	20	6
CAGTAGTTCCTGGGGT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCCCGACCGCTGA	ref_4000_upstream	11	14	8	12	14	14	15	13	20	6
ACCAAATGGACCTTCT	ref_4000_upstream	14	19	23	23	24	10	23	16	17	19
ACGTTAATTGGCCATT	ref_4000_upstream	62	79	62	77	80	61	87	51	83	56
TGTGGCTCATGCATAG	ref_4000_upstream	44	75	57	53	42	45	64	34	70	44
AGTATATAATTAGTAA	ref_4000_upstream	2	3	2	2	3	2	5	3	6	3
CTTTTAATGTCTCTTC	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
ACGACATTTATTAGGT	ref_4000_upstream	7	12	4	10	10	7	10	4	8	3
GCAGAAGTGCTACACG	ref_4000_upstream	15	17	15	15	24	12	20	15	23	9
AGTAGGTGGTGAAGCT	ref_4000_upstream	7	9	18	9	16	11	21	6	16	12
CTTCTAGTCCCGCAGT	ref_4000_upstream	0	0	0	0	0	0	0	0	0	0
TAGAAATCTCAGGCGC	ref_4000_upstream	14	19	21	19	35	18	23	8	35	11
GATTCACACACAATGG	alt_4116_fdr	2	5	1	1	4	2	0	0	2	0
GATATACGGCCCTAAC	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCCGGGTTACGTA	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TACGAACAAGCACGGA	alt_4116_fdr	2	0	2	0	0	3	0	0	6	0
CTGATATTGCGGAGGC	alt_4116_fdr	42	62	39	39	68	53	74	39	80	35
GTGTGGTCGGTAGAAC	alt_4116_fdr	8	22	14	14	38	16	30	5	23	15
ATCACTTCTCGTATGG	alt_4116_fdr	34	30	33	26	35	37	34	29	46	18
ACCTGTTACAACAGGT	alt_4116_fdr	71	143	83	66	165	58	115	64	135	53
TTGACGTTTCATTCAT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGTCTTCGTAGTT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGCTGCTTTTTCT	alt_4116_fdr	33	48	39	28	41	17	49	25	46	31
ACCTTGTCGTTTGAGC	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
GGATGCCGAAACCTTC	alt_4116_fdr	41	44	35	45	47	24	65	34	50	38
CCACATCTCAAATGCG	alt_4116_fdr	5	14	16	4	14	4	7	13	11	7
AAAATGCGCTCATTTA	alt_4116_fdr	32	64	33	38	48	40	67	29	64	23
GGCCATCAAGCATTTG	alt_4116_fdr	15	40	22	15	38	13	49	16	39	9
TTGCTACGTGCAGTCT	alt_4116_fdr	4	5	4	3	5	5	12	4	8	6
TGATGACTGGATCCCT	alt_4116_fdr	14	17	19	9	28	21	30	8	28	10
TAATGCTGTCTCCATG	alt_4116_fdr	3	6	0	1	2	2	2	3	6	1
AGAAGGGCAGAGTCTT	alt_4116_fdr	47	99	78	55	98	54	103	70	128	51
CTGTGACACATCCCTG	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTTCAGCGCAGAAATA	alt_4116_fdr	17	35	18	15	27	8	25	13	31	5
AATACACCTTATGTGT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCGTAATGTAGCG	alt_4116_fdr	35	90	23	18	83	15	93	14	70	12
GCTAAGCGTGAATTGA	alt_4116_fdr	10	23	14	15	24	15	32	14	23	14
CATTCTGCGTCTTGGG	alt_4116_fdr	9	10	11	10	11	12	20	8	24	11
CAAGCTTGGTAATGTT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
ACACCCTGAACACATT	alt_4116_fdr	11	34	22	13	25	12	25	15	34	16
GCTCGCGGTGCACGTT	alt_4116_fdr	5	6	0	4	9	2	4	4	5	7
TCGCGCTTGATGCCAG	alt_4116_fdr	2	4	6	1	0	3	6	3	11	4
GGTTTTGTTCCACCAT	alt_4116_fdr	44	84	58	38	71	43	71	36	91	50
CGGCGCTGAGAACAAA	alt_4116_fdr	37	60	43	39	47	49	51	14	53	33
ATTCAGACCTCACCTA	alt_4116_fdr	2	12	5	1	9	1	2	3	6	3
GCACAACGTATATGGT	alt_4116_fdr	8	12	4	3	14	2	3	9	15	13
TTGTCGTTCGTACTAC	alt_4116_fdr	18	24	19	11	20	8	19	11	15	15
CGCAGTGTATACGGTC	alt_4116_fdr	49	59	52	43	65	35	64	43	61	33
CGCGTGGTGTGTAACG	alt_4116_fdr	15	50	26	28	45	26	47	24	45	18
GAGCATAGCGCTGGGT	alt_4116_fdr	19	31	22	24	24	19	33	19	33	17
TGCAGTTGGACCGACA	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TAACCTAAAGGTTAGT	alt_4116_fdr	4	14	7	8	9	7	15	6	13	5
CGTCGGGTATGCGGTG	alt_4116_fdr	18	44	35	13	43	28	42	25	50	23
AGACATAGTGTACCAT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTTACACTATGTTTTC	alt_4116_fdr	26	30	25	28	27	23	37	19	26	14
ACCCTCCATCCACGAT	alt_4116_fdr	29	48	31	23	53	20	66	15	53	23
CTTCACCATACGGGTT	alt_4116_fdr	4	8	12	4	16	4	10	1	12	8
GCTCCATGAAGCGCTT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCTCTTGCCTGCA	alt_4116_fdr	54	84	78	50	63	45	76	35	72	33
GCATCTCCTGTTTGAT	alt_4116_fdr	9	12	8	10	9	12	13	1	13	3
CGACAAGTAGATCATC	alt_4116_fdr	9	9	5	3	4	1	5	2	11	1
TCTCGACTCAAGTGTT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGCTCGCCAGATA	alt_4116_fdr	140	190	148	115	205	111	216	126	219	134
CGCTAAACAGCATATT	alt_4116_fdr	4	6	9	5	21	7	15	8	19	6
CGACTTTACATCTGCT	alt_4116_fdr	15	28	18	16	26	11	28	11	13	23
GAGTAAGTACCTTGCT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTTCGATTGGAC	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTGAGTGCCTTT	alt_4116_fdr	29	37	30	22	35	21	40	19	53	18
TCCCCAGGGTATGCAC	alt_4116_fdr	7	12	3	3	16	2	22	1	13	4
CGCAGGTTGGGCCACA	alt_4116_fdr	30	30	19	19	38	24	37	18	49	21
TCTTGGCTCTCTCGCC	alt_4116_fdr	4	4	6	3	7	7	5	2	5	4
GCTTCACCCACACGTT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGCAACTGACCG	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CGGAGATTGTGCAACC	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGACTTTGTCATT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTTTGTAATTTT	alt_4116_fdr	12	17	13	11	15	10	8	16	20	8
CTTATAGGCGCCTGAT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CAATAATATAGTCCCA	alt_4116_fdr	36	57	33	32	47	34	40	24	54	26
CAAGGCTTCCGGTTAT	alt_4116_fdr	5	11	12	3	10	4	11	5	7	7
ATTGATGCATGCCTTC	alt_4116_fdr	31	50	32	39	44	31	57	33	45	34
TCTGTTTGGCCCTGCG	alt_4116_fdr	8	11	14	7	13	6	15	5	24	9
CCCACGTTGGGTTTTT	alt_4116_fdr	15	48	23	19	45	16	41	13	43	19
GTGTTTTATCACTGCA	alt_4116_fdr	14	8	9	6	16	6	12	10	19	4
CGGTCCAGGGACGTTT	alt_4116_fdr	18	17	16	27	30	11	31	21	35	12
CTTCTAAGATGCGTAC	alt_4116_fdr	0	9	2	1	12	2	7	4	15	5
TCCGTGTTATCTGATA	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGTATTTATGCTA	alt_4116_fdr	31	55	38	23	66	25	72	25	67	25
GAAACGATTCGCGGTG	alt_4116_fdr	14	19	18	21	25	14	14	11	24	11
CTGTGTCACATCCCTG	alt_4116_fdr	87	133	97	85	195	84	182	73	181	57
GATATCATGTTTTTGT	alt_4116_fdr	60	82	61	58	71	57	96	34	75	45
TGGGCCCGTATACCGA	alt_4116_fdr	32	51	39	33	62	32	51	29	58	27
AGTCATAGTGTACCAT	alt_4116_fdr	52	115	72	54	101	53	77	59	95	64
GTCAGATTAAAACGTA	alt_4116_fdr	6	7	6	7	16	6	12	6	15	5
CAAATTTTGGGTATGA	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCTTGCTCGTCAG	alt_4116_fdr	84	155	85	58	168	67	161	85	160	67
CTAGTACTTATGAGCT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TACGGTATAGGAAAAT	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
GAGTATCATACGTACT	alt_4116_fdr	68	120	95	69	131	58	122	59	145	62
CCGCAGTTCATCGTTA	alt_4116_fdr	20	127	45	39	122	31	112	33	121	26
ATTCGGCAGTCGCTTC	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
GCATATCGTTGGGCTG	alt_4116_fdr	0	4	5	1	1	2	1	0	2	0
GTCTCTGGAGTACAGA	alt_4116_fdr	40	46	29	36	65	28	50	29	51	20
TCCACTACCAGCCCCG	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
AGGAAGTGTTAGTGTC	alt_4116_fdr	4	20	11	6	11	7	16	6	21	7
GACTTATTCTGCTGTA	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTAAGGCCGGAT	alt_4116_fdr	25	65	50	44	58	36	58	34	56	32
GAGGTGATGTAGCTGG	alt_4116_fdr	7	16	6	6	16	11	13	9	13	10
GCCTGTATAGTTTGTC	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTCTGCTTTACAA	alt_4116_fdr	6	18	4	6	25	4	36	4	30	4
ATTAAAAGGATTTTGG	alt_4116_fdr	17	27	27	16	40	22	31	16	50	13
CCTAGGAAATTTGGTT	alt_4116_fdr	44	87	38	47	82	54	78	39	72	47
GGAGAGCGTATCGTGG	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTATCTTCTTCTC	alt_4116_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGAGCCTGTCGAC	alt_4116_fdr	1	5	4	3	2	2	4	2	4	1
CCAACCTTATTCTCGG	alt_4116_fdr	0	8	3	3	13	4	14	0	13	2
CCCTAATTTAGTTCGT	alt_4116_fdr	2	5	2	5	9	4	4	3	1	2
CCCGGGCCTCTGCAGT	alt_4116_fdr	5	13	5	5	9	6	15	6	9	4
GGGTGAATGGACGCGC	ref_5700_new	22	28	23	17	17	11	12	12	18	18
TTTTCATTCGCAATAA	ref_5700_new	131	174	169	143	177	123	189	117	180	103
AAGCTTTGGTCAAAAT	ref_5700_new	100	172	148	111	175	145	175	150	155	115
GAACCATACACGCCTT	ref_5700_new	38	60	61	51	79	40	60	52	69	41
ATTAGTCAAGCACGGG	ref_5700_new	7	11	10	15	9	10	11	8	13	7
TTCCATGTCTTTGGTG	ref_5700_new	17	27	19	16	35	21	26	22	25	23
ACGTCACACGCCCGTT	ref_5700_new	114	114	125	111	145	100	108	98	104	82
GCTTAGAATTGTATAT	ref_5700_new	30	29	33	18	22	21	32	18	36	15
GACAGCCGTACTTAGG	ref_5700_new	0	0	0	0	0	0	0	0	0	0
GCTTGACATGAGCCCG	ref_5700_new	54	86	55	66	88	52	82	77	108	54
ATGAGCGTCAAGTCGA	ref_5700_new	9	13	23	18	19	21	21	8	15	8
TATTGTAGTACTTAAC	ref_5700_new	68	126	83	78	92	66	111	55	87	73
GGATCCTACGAATATT	ref_5700_new	16	7	13	18	16	13	23	12	21	14
TGCATCAGTCGTCATA	ref_5700_new	43	59	49	36	50	51	40	36	45	31
GGAGCTGGAGCAAAGT	ref_5700_new	41	51	47	37	47	36	38	30	68	39
GTGAGGGTTTGGGGTT	ref_5700_new	115	155	126	90	122	93	132	72	149	70
TCGGGCTTTATGACGG	ref_5700_new	0	0	0	0	0	0	0	0	0	0
TTAGCATTTCATAAAA	ref_5700_new	28	28	34	38	33	31	38	14	34	32
CGCTACTAGCGAGTCG	ref_5700_new	13	10	16	10	10	10	7	12	25	11
CGTGCTGGTTTCCTAT	ref_5700_new	18	18	11	16	25	17	18	18	21	14
AACTCCCAAACCATAG	ref_5700_new	14	36	24	9	38	17	42	15	42	9
TTGTCGAGACTTTGCA	ref_5700_new	16	40	33	20	43	21	52	27	54	19
TGTTGGAGCTAATTGG	ref_5700_new	15	21	30	8	23	17	28	13	17	10
TTGGGTTTCCGAGGAG	ref_5700_new	4	1	5	2	3	7	1	2	1	4
TCGCAACAATTTATTC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CGCATCGGGCCTAGGA	ref_5700_new	498	678	570	507	675	456	676	465	690	440
TTTGTGCGTTCATTCA	ref_5700_new	22	44	21	22	41	23	40	29	37	11
TATTTCTGGGCAGAAA	ref_5700_new	32	48	42	39	37	32	43	23	43	22
TATGCCAAATTACCCT	ref_5700_new	0	0	0	0	0	0	0	0	0	0
TCAGCTCGCGGAGGTA	ref_5700_new	8	25	15	13	13	11	19	13	18	12
CTTCTCCGCTGTAGGC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
TCTCGCCAAGCTTGCC	ref_5700_new	17	35	25	20	19	29	33	13	29	19
TCCCTTTAGGACCTAA	ref_5700_new	0	0	0	0	0	0	0	0	0	0
ATAGTGACATTTATCC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
GGATACACCTCCGTTA	ref_5700_new	10	21	19	14	22	11	18	15	23	14
TCCAGGTTGCAAGATG	ref_5700_new	126	122	132	104	164	91	137	97	134	98
GTTCGCTTTGAAAATT	ref_5700_new	10	22	8	15	20	11	14	17	13	9
GCTCATTCCTAGATTT	ref_5700_new	14	10	9	13	13	17	5	11	10	11
AACCGTCTCGTGGGTG	ref_5700_new	8	14	6	4	16	12	15	4	15	9
CTCACAATGCTGTCTG	ref_5700_new	38	50	41	35	35	32	52	32	48	33
CCTACATGAAAGTACC	ref_5700_new	8	43	6	8	47	16	43	11	62	8
GTACTTAGTGTTGTGG	ref_5700_new	79	105	106	102	105	88	107	73	124	89
TGGGGCATAGGGAATT	ref_5700_new	130	231	156	134	236	130	182	126	191	105
CGAGGGTACATTGGAT	ref_5700_new	55	105	79	69	81	65	86	65	98	71
TACGCCTTAGCATTGC	ref_5700_new	28	36	26	25	44	25	52	18	45	17
CCGAATTTATCCTAGT	ref_5700_new	18	11	13	9	18	13	25	18	22	10
TTATGTTGGCTTCATC	ref_5700_new	36	49	63	62	54	32	69	30	58	37
GTACAAGATTTAGGAT	ref_5700_new	26	32	31	13	17	20	22	15	27	18
TTAGGGCGTGATGTAA	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CAGTATCAGGGTCAGT	ref_5700_new	37	40	50	45	43	27	49	46	48	33
CGTTTGCGCACCGCCT	ref_5700_new	10	6	4	5	10	4	3	9	7	3
GGTAAATATGGCCATA	ref_5700_new	26	26	38	20	23	34	54	18	31	17
CCAATACGGTCCGCGG	ref_5700_new	9	11	2	6	12	3	6	5	9	3
TTTAAGAGGCGGACTA	ref_5700_new	80	70	63	60	80	56	73	53	80	56
AATTTGGGCAGCACGG	ref_5700_new	0	0	0	0	0	0	0	0	0	0
GTATCTTGTCTACGAT	ref_5700_new	39	56	49	50	63	51	64	42	60	29
TGATCTTTTGCCCTTT	ref_5700_new	0	0	0	0	0	0	0	0	0	0
ATGACTCGACCTTTGT	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CGGGTTACTTCTGACC	ref_5700_new	12	17	18	7	18	16	11	12	18	13
GCGTACGAGTTTGTGC	ref_5700_new	0	1	2	2	7	0	4	1	4	1
GTTCTATGAATGTAGC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
TCTTTGGCACGTATCA	ref_5700_new	42	38	38	24	50	33	39	30	57	29
TGCGTTGCGATCCTTC	ref_5700_new	30	21	31	18	35	24	32	21	33	27
CGCATCGGGCCTAGGC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CATAGTGTGATCGCAG	ref_5700_new	36	54	39	34	41	43	59	40	52	35
CAGCATAGGTCAAATA	ref_5700_new	0	1	0	1	1	0	1	0	3	0
AATTCATACGTATACA	ref_5700_new	6	10	24	14	17	13	12	5	20	11
CTGTTTTCTCTAGAAC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
TCGTCAAATGTCGCGT	ref_5700_new	7	10	5	3	4	3	6	4	5	7
CATCGGATACCTCATG	ref_5700_new	1	4	6	1	4	3	2	0	1	2
ATCCATGAGCCATTTA	ref_5700_new	27	38	27	17	27	14	36	23	42	21
TGCAACCTTCCAACAC	ref_5700_new	7	15	19	5	13	10	16	10	17	7
ATAGCCATGGCACATG	ref_5700_new	29	39	45	31	31	29	42	27	44	24
TTTGGCTACGAAAATT	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CCGCCCAGCATTTCCA	ref_5700_new	56	66	55	51	60	52	62	49	61	49
CATCCGGTTCTATACG	ref_5700_new	8	22	29	10	15	19	28	11	22	11
CTAAACCTGATTCGAA	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CATACCATTACCACAC	ref_5700_new	11	23	10	11	22	8	15	5	20	6
GCAATCACGTGACTTG	ref_5700_new	23	33	44	28	29	15	40	24	39	19
GGCAAATCCTCTGATC	ref_5700_new	73	80	84	67	106	65	107	68	96	65
TAATTATGTAGTTGGC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
TTTGGACTACCTGTTC	ref_5700_new	1	4	7	4	5	5	7	2	15	2
CACAGCATTCCCGACT	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CCAGCTCGGTTAAGCA	ref_5700_new	69	109	85	64	108	74	118	62	112	49
TTACGTCGCACTATGT	ref_5700_new	0	0	0	0	0	0	0	0	0	0
GGCCCGACTGCCATCG	ref_5700_new	8	9	12	14	10	9	14	14	13	5
GATTCCGCAACATTTG	ref_5700_new	4	4	5	4	11	4	2	1	3	4
CACATTTGCGCGTGGT	ref_5700_new	17	16	9	20	27	14	14	15	27	11
TCTATGTCAGGAATTG	ref_5700_new	0	0	0	0	0	0	0	0	0	0
TGTCATTCAATAAGCT	ref_5700_new	20	36	38	48	33	31	48	15	44	29
TAGCGCGGATTCCATT	ref_5700_new	85	88	93	70	90	82	99	81	124	67
ATGGCACCCTGTACGT	ref_5700_new	0	0	0	0	0	0	0	0	0	0
CGGGAAATCTATCTTC	ref_5700_new	0	0	0	0	0	0	0	0	0	0
GCCCTTTAGAGCAATA	ref_5700_new	94	123	119	87	130	83	102	83	156	103
TCCCATTATAAGCAGA	alt_2597_missing	7	17	12	7	14	3	14	10	22	8
GGTCCCGGCGTTGGAA	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
TCTACATTTCCCAGCT	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
TGTAGACCTTGCAGTT	alt_2597_missing	10	18	15	12	30	15	24	9	18	15
CGCCATTATGGTAAAC	alt_2597_missing	2	14	8	8	19	5	22	4	21	8
ATCAAGAATTTTCCCA	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
AATTCTTGAAGTTTTT	alt_2597_missing	41	69	45	38	52	43	73	32	79	41
CACGCTATCGCGTCGT	ref_2597_missing	15	36	31	31	30	29	42	19	30	17
CTTGTTGGGTCTCGTT	alt_2597_missing	7	16	9	11	11	6	18	7	23	7
GAAACCTCCAGGAAGA	alt_2597_missing	9	18	12	20	23	11	22	11	18	3
TTTTGCTCAGTCCTCT	alt_2597_missing	4	3	6	4	8	3	3	1	3	1
TGCGGCATCTAACTGT	ref_2597_missing	55	82	60	53	97	37	114	49	104	41
TAGTTATCCGACGAGG	alt_2597_missing	33	39	28	30	45	21	72	16	52	18
GTAGTAAGTTATAATG	alt_2597_missing	43	82	51	31	67	48	67	39	91	33
GTTTCTCTCATGAGCT	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
AATTAGTTTTTATAAC	alt_2597_missing	13	25	15	18	20	17	16	6	31	14
ACCTCTTCGCCTCGTC	alt_2597_missing	11	19	19	16	26	18	38	11	28	15
TTAAGCTATCGATCAA	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
GGCCCAGGTTTATTAT	alt_2597_missing	19	50	31	33	48	23	49	22	55	18
GAGGGGCGCATGCCTT	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
GGAATCCGTCTGGTTA	alt_2597_missing	14	12	11	10	10	8	24	11	20	11
ATGAACGCCCTCTTGT	alt_2597_missing	17	30	19	20	25	28	35	16	44	24
TGATGCTCTGTTAGAA	alt_2597_missing	55	114	61	49	87	52	109	58	107	49
TTGACCTTGTCCGCTT	alt_2597_missing	15	16	15	10	24	8	16	16	19	7
ATTGGTATCTGGTACA	alt_2597_missing	41	76	63	52	90	56	95	55	96	59
TAGTCATCCTCCTATT	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
CCACGTCTGCTACATA	alt_2597_missing	7	81	10	14	91	14	104	15	93	9
GGCCTAACCTTCTTGT	alt_2597_missing	144	348	158	174	411	145	345	118	345	127
CTGGTAGGGTCACCAG	alt_2597_missing	8	7	2	8	9	7	6	6	15	6
TGAATCAGCGAGCGGG	alt_2597_missing	7	7	12	4	14	8	20	9	16	10
TATATCAGTGGGCCGT	alt_2597_missing	10	13	9	8	12	6	19	7	30	6
GTCCTTTTGTCATTCA	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
TATTACAGCTTTCATT	alt_2597_missing	32	56	30	31	39	24	58	24	52	25
TACGGGAAATTACCGC	alt_2597_missing	5	6	8	3	6	5	10	3	16	6
ATCGTAGGATGATCGT	alt_2597_missing	55	85	52	43	81	40	81	56	67	42
GGGGTACGGTCTATAT	alt_2597_missing	13	18	11	11	12	8	25	14	20	10
CAATTAGGTAAACACC	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
CAGATCTCCTGCCGTG	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
AATGCTTAGTTTTTAA	alt_2597_missing	18	35	18	15	29	16	33	14	44	12
AGCCTATGAAGGATGT	alt_2597_missing	3	17	2	3	13	3	17	1	11	1
TGCCGTGAGAGCACAA	alt_2597_missing	0	1	1	0	1	1	6	6	1	0
GGAGCGAGGGGCTTAC	alt_2597_missing	0	0	0	0	0	0	0	0	0	0
TAGCGGCCAAGTAGAA	alt_2597_missing	56	76	78	48	94	47	108	46	130	52
CCTTTGGGGAGATTAA	alt_2597_missing	5	11	3	5	10	3	13	3	12	8
GACTGATGTGGCGGTA	alt_2597_missing	10	11	8	9	20	12	19	4	16	5
GAAGTTATGACAACTG	alt_2597_missing	7	11	7	7	7	8	17	3	15	3
CCGCGTTCGTATATGT	alt_2597_missing	16	38	14	21	29	8	26	10	44	10
TTCGGCAGATTTTGCG	alt_2597_missing	15	8	18	12	19	12	22	9	15	6
TGGATCTAGTCGTGTT	alt_2597_missing	20	25	15	14	36	16	22	9	39	12
ATCTAATACGGCTAAG	alt_2597_missing	28	48	38	21	55	19	55	31	43	30
AATAAATATTTGTTTC	alt_2597_missing	33	68	60	63	64	39	84	35	79	45
TTGAGGTGCCTTTCCG	ref_3566_missing	76	135	83	83	174	67	200	67	186	71
ATCTACGGTCGTGTGT	ref_3566_missing	10	48	7	9	39	6	43	7	41	6
ACAAGTCATCGGCATG	ref_3566_missing	33	51	31	36	55	30	70	22	62	32
GAACCGCTCCTTGGCA	ref_3566_missing	14	48	24	25	26	16	46	16	40	9
CCGAGGGCGCGTGTAC	ref_3566_missing	19	30	18	17	38	21	30	16	37	13
TTTGATGATGACGGAG	ref_3566_missing	97	116	104	71	90	84	126	67	151	74
GTGTTGTCTCGAGTGC	ref_3566_missing	1	4	1	3	4	1	5	1	4	1
TCCCTAGCTGTAACGG	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
CCCCGTTTTCTAGTGT	ref_3566_missing	5	15	8	2	15	3	17	2	13	7
TAGGCTCTAACCCCCG	ref_3566_missing	39	52	41	45	74	38	79	27	64	30
AGCCTTATGTAAGATA	ref_3566_missing	12	72	23	26	45	31	78	21	71	33
CATTCATTTATCATAG	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
CACTTCGTGTTAAGAT	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
GGTCAGCACACCCTCT	ref_3566_missing	43	104	48	37	89	47	111	50	105	51
TCGTATAGTTAATTCA	ref_3566_missing	10	20	13	9	32	10	25	9	22	13
TGTTTCCCAGTCTGGA	ref_3566_missing	4	5	11	2	10	5	12	1	9	4
AGATGTCATGGCCGTG	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
GGTGTCACCTAACATG	ref_3566_missing	44	71	60	50	92	56	96	49	78	42
TATGAGTCAGTTAAAT	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
TCTCGGGGAGGTAAAC	ref_3566_missing	41	97	61	35	93	50	110	62	100	54
AGATGCAACCAGAAAT	ref_3566_missing	46	84	47	39	66	37	102	40	70	40
GTTTACTCTGCTCTTT	ref_3566_missing	41	68	44	40	59	48	53	27	80	39
ACAGGCGATACCCACG	ref_3566_missing	12	26	19	4	21	9	24	15	22	6
GTGGTGGGTATTGTGT	ref_3566_missing	35	80	46	33	110	35	104	44	110	35
CGGATCCTCATTATGT	ref_3566_missing	17	45	27	23	60	11	51	23	47	15
ACGGGCTCAATGCCGG	ref_3566_missing	121	231	170	133	223	148	242	111	272	147
AGGTCATCAGAGCGCG	ref_3566_missing	109	157	118	98	144	109	166	99	199	81
TTGATATCTGATCCTC	ref_3566_missing	51	59	46	47	82	29	77	45	81	49
GATCTTGGATGGATTC	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
CGGGTTGTTATTCGTT	ref_3566_missing	3	5	3	1	6	3	10	2	11	7
TTCGAATTACCTGGCG	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
CACACCGTTAGTGGTA	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
CCAATCTCATGTGAAT	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
ACAAGATCGACGTCTT	ref_3566_missing	83	131	95	76	138	72	161	61	155	62
ATATGCATGTCCAAGC	ref_3566_missing	9	24	17	19	23	25	27	12	21	21
GCGGATCATGCTCTCT	ref_3566_missing	11	14	8	4	19	12	14	8	22	9
AGTCATCGCCACGGTA	ref_3566_missing	16	16	6	9	22	17	25	6	21	11
TGACAAAGGCTAATTC	ref_3566_missing	0	0	0	0	0	0	0	0	0	0
GGAGAAGGACTTGAGT	ref_3566_missing	41	105	56	34	64	36	103	42	93	22
CCAGATGGAGCGTAAT	ref_3566_missing	148	253	147	128	265	110	283	116	260	99
GGTCAAGGAGTTAGTT	ref_3566_missing	8	11	10	10	11	10	12	4	12	7
CTGCGATGCCTCATTA	ref_3566_missing	13	14	15	13	15	12	14	4	12	9
CCTATTATATGGCTGT	ref_3566_missing	15	32	22	10	47	18	54	21	42	12
TCTATCAGAAATAGCT	ref_3566_missing	1	1	5	3	1	3	2	3	3	1
GATCAGGTACTAAATA	ref_3566_missing	8	13	8	10	21	7	13	5	17	9
TATTAGGTATTGAGAG	ref_3566_missing	10	24	17	12	35	5	20	3	29	15
GTCCTGTATTAGGGTT	ref_6024_new	52	111	63	49	105	54	134	43	101	50
TTAGGGTCGTGAGTAG	ref_6024_new	14	44	22	14	51	18	45	24	61	13
CAAACCCCTACGCCGT	ref_6024_new	8	24	9	5	23	10	17	9	18	8
CACCTGATAGGTTTAA	ref_6024_new	14	33	23	19	46	12	59	13	68	14
CGTCCAACCCGATGGA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
GATTTCCGTGGTACTG	ref_6024_new	0	0	0	0	0	0	0	0	0	0
AAATAATGTTGAGTGA	ref_6024_new	40	70	65	33	79	30	75	30	105	33
CCTTCACCAATATGTA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
CACCGTTCCCATGAAA	ref_6024_new	15	15	8	6	27	8	26	10	19	10
TAATTAAAGACATATT	ref_6024_new	22	34	21	18	36	27	36	18	38	31
ACCTTACTATATCTAC	ref_6024_new	21	73	28	25	83	16	66	23	82	10
TCGTAACGGGGTTGGA	ref_6024_new	58	113	52	52	101	43	110	39	101	42
CGCGTATCTTTTTCGC	ref_6024_new	13	16	10	9	19	9	26	17	15	9
AGGAATTTTGTATACG	ref_6024_new	124	243	158	123	238	97	259	99	269	96
GTTTAGGTACTTTATG	ref_6024_new	0	0	0	0	0	0	0	0	0	0
CCGCCATTGGGCAGAG	ref_6024_new	25	33	39	31	58	27	49	23	37	23
TCCGAATGTTAGGGAA	ref_6024_new	16	24	25	10	20	14	32	12	40	8
GTAGCGCTTGGGCGTG	ref_6024_new	35	68	35	32	65	21	68	33	80	26
ATTGAATCGGTTTCAG	ref_6024_new	23	49	37	22	55	19	53	17	71	19
CCCATCTTTCGCACTG	ref_6024_new	6	4	3	10	9	8	14	8	20	11
TTGATTGAAATCCCGC	ref_6024_new	5	11	4	4	14	6	7	2	9	5
GGAACTTGTCTCGCCT	ref_6024_new	42	38	59	43	50	38	69	39	67	22
GTTAATTACATTTACA	ref_6024_new	4	7	3	3	9	0	3	0	7	2
TGGCTAGCGAAGGTCG	ref_6024_new	18	40	19	23	30	13	40	13	32	19
AAGTTCAGTCAGCGTG	ref_6024_new	5	25	8	8	16	11	23	9	20	2
TTCCTATCGTTTTCTT	ref_6024_new	0	0	0	0	0	0	0	0	0	0
TAGCCCTTACGCTTTA	ref_6024_new	11	19	10	11	19	9	20	9	23	4
CGTTGCCCAAGCCCGT	ref_6024_new	7	22	8	9	17	11	17	6	14	13
GGCTCGTGAGTTCTTG	ref_6024_new	8	24	6	9	18	8	16	7	20	5
GAGATTCACGCTGGTT	ref_6024_new	35	91	55	61	75	47	68	35	98	41
TCCCAGCATAATTGTC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
TGATTAAACATACTGA	ref_6024_new	123	305	158	131	292	130	285	84	297	107
GTGCTGCTAACAGTTG	ref_6024_new	20	34	21	24	38	14	46	17	56	23
GCCTCCGCGGTCATAG	ref_6024_new	11	37	7	21	28	11	34	13	28	10
GTCACCCTCAGTGATT	alt_6024_new	24	71	35	27	81	19	67	15	85	27
GTGAAGCGCCGATAAA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
TGGTCAGGGTAGTTAC	ref_6024_new	202	438	270	199	430	205	428	188	430	192
CATAACTCTTGTATAT	ref_6024_new	29	72	44	34	67	35	82	31	98	44
ACACGATTGAAGGCGC	ref_6024_new	15	40	16	7	20	17	25	15	26	17
GAATGTGGGTTGGGGA	ref_6024_new	36	52	47	38	55	34	75	48	64	20
GTAGCGCCGCCCTCGC	ref_6024_new	0	2	1	4	6	1	3	1	7	3
CATGCACTATTCGTCC	ref_6024_new	3	29	2	5	12	3	24	4	18	7
CTTCCCGCGGGTAACG	ref_6024_new	18	24	10	10	21	16	12	10	17	9
AGCGGCCGCCCGCATC	ref_6024_new	17	25	10	14	22	14	25	6	26	14
TGCTTGAAGTTCGTTG	ref_6024_new	1	8	2	11	2	3	7	7	5	5
TACCTGCACCTTGAAG	ref_6024_new	6	17	13	10	25	8	10	6	12	5
GGAGGATGGTCCCTGT	ref_6024_new	0	0	0	0	0	0	0	0	0	0
AAAGCGGGAGGTCCGG	ref_6024_new	5	5	7	4	3	7	6	3	11	1
ATTGTTTACGGGTAGG	ref_6024_new	0	0	0	0	0	0	0	0	0	0
AACGCAGAAACTCGGA	ref_6024_new	27	51	32	20	53	31	57	29	51	28
TCGCTAATTAATCTGA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
ATGGGTCTGGTTATCG	ref_6024_new	0	0	0	0	0	0	0	0	0	0
TTACTATAGTGATTTC	ref_6024_new	12	31	22	21	30	17	39	16	35	13
CTTTAAGCTCTTTTAG	ref_6024_new	64	137	92	63	118	62	159	63	158	75
CGTCCTCCATTCTAGG	ref_6024_new	6	9	12	5	12	13	21	3	23	10
TTGACTACCTACGGCT	ref_6024_new	1	2	5	2	3	1	3	2	2	1
TATGTTTTATGGGGGG	ref_6024_new	35	39	25	38	46	22	38	21	61	23
CCTTAACCTGAGGTTA	ref_6024_new	23	60	32	34	66	30	74	29	67	23
TTGCTGCTCTTTGGTT	ref_6024_new	77	152	101	76	185	77	142	76	167	56
GTGGGTAGAGTTGTGC	ref_6024_new	9	31	19	14	31	7	30	17	40	15
GTAGTGGTAGGTCGAA	ref_6024_new	14	14	8	10	14	12	19	6	21	9
CCGGCGAATTAGCACC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
GGAGCTTTTATACACC	ref_6024_new	71	145	85	72	148	80	139	54	132	59
TCACATGAATCGCAAC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
ACACTCCATTCCACTT	ref_6024_new	0	2	0	0	1	0	0	0	1	0
AGGTTATGCGGTTGAT	ref_6024_new	12	32	15	12	26	17	35	11	30	16
GCTCGCCAGAAAATTA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
GAGAGCCGTCAGACTA	ref_6024_new	19	35	26	14	44	16	34	12	39	16
ACGTTTAGTTCAGTGG	alt_6024_new	7	11	3	4	12	4	13	5	17	3
TTGTAAGTTTTGATCT	ref_6024_new	0	0	0	0	0	0	0	0	0	0
GGGTTAATTCTGTTCA	ref_6024_new	16	18	19	14	23	13	25	8	23	2
TGAAGTGTAACCTTCT	ref_6024_new	1	3	1	2	0	0	1	0	6	0
AGAGGATGGTATTGGC	ref_6024_new	8	19	7	10	16	10	9	5	18	13
TTCGTCATCAATAGAC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
AAGCGGCCTTCAGTGT	ref_6024_new	44	84	60	53	98	47	104	41	89	35
GGTTATACATACTCGC	ref_6024_new	22	68	29	35	50	19	57	25	57	23
GGGTAAGATTTGTTCA	ref_6024_new	3	15	4	4	16	9	18	8	13	2
TTTGGCGCTCGGGTCG	ref_6024_new	15	23	29	16	33	17	48	15	30	20
GTATTTGTACGCAAGC	ref_6024_new	32	54	40	33	41	18	55	18	56	23
CGGTGATGTCGCGTCG	ref_6024_new	0	0	0	0	0	0	0	0	0	0
GGGTTATCTGACGAGC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
CCTAAAAGAGCTCCCG	ref_6024_new	16	37	18	14	36	13	40	18	40	19
AAATTATCTTCTCCGC	ref_6024_new	36	52	33	39	60	26	60	30	54	26
TAGTGCACTCGTACCA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
GTGAGGTAGTATCTCT	alt_6024_new	30	64	32	19	67	23	58	33	54	20
GTGGGAGCGCTTCCGA	ref_6024_new	17	29	13	17	55	20	45	14	51	13
GTCTACTAGAAGTCCT	ref_6024_new	8	22	7	8	15	14	21	6	23	7
CTAGAAGCCGCATTAC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
TCATTACTCTACAGCA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
ACTTGGTTCTAGTTTA	ref_6024_new	0	12	5	2	11	5	6	1	4	1
CTTGCGGAACTAGGCC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
CCGTGACCTGTCCAAC	ref_6024_new	8	15	5	9	11	4	13	7	10	6
CTTCTCCGGATGCCAG	ref_6024_new	6	17	10	4	12	3	10	5	7	6
GCCTCCGCATGTCATA	ref_6024_new	18	69	18	19	61	15	91	19	75	21
CGATCTCTTAGTGCTA	ref_6024_new	13	13	8	12	15	6	12	9	11	8
TGCTGTCATTGAAATA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
TCACGGCCAACGTGGC	ref_6024_new	32	48	27	24	60	32	64	19	68	20
GTGGTAGATATTAAGA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
AGTCATCCGCGGTTTT	ref_6024_new	0	0	0	0	0	0	0	0	0	0
TGCCATAATTTGCGGT	ref_6024_new	0	0	0	0	0	0	0	0	0	0
CAAATGGAATTACTCC	ref_6024_new	0	0	0	0	0	0	0	0	0	0
ACTCCCACCTAGGCAC	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GTCAACTTTACATTCA	ref_6024_new	8	29	16	11	34	17	44	13	21	8
AGCAATCCAGGCCATA	ref_6024_new	39	71	57	29	84	36	81	30	84	42
ATTAGAACAATCCGCG	ref_6024_new	13	28	17	14	26	11	26	18	38	12
AGTAGTGTATTTGGAT	ref_6024_new	17	45	23	13	49	18	58	18	52	22
CGTAGTTCAAACAGGT	ref_6024_new	56	105	43	38	113	37	105	29	116	50
TTCCACCTTAATCTGT	ref_6024_new	8	23	11	6	17	13	31	7	37	8
TTTTGTGGAAGTGTTC	ref_6024_new	1	4	3	1	5	0	2	3	5	1
CCCTCCATACACCCTA	ref_6024_new	0	0	0	0	0	0	0	0	0	0
ACAAGTAGTGTACACA	ref_6024_new	35	87	43	39	90	30	84	33	78	32
GCATACAGCTGGAATT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTGAATCAGATT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGTTATGTTCGTT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGCAATAGGTCTC	ref_285_fdr	11	10	29	6	13	19	9	7	13	12
TCACCACATCCTAATT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGGCAATCCCCGA	ref_285_fdr	69	66	80	86	91	61	77	57	97	40
CTGGAAACTTTACCCC	ref_285_fdr	123	163	176	143	148	100	175	133	184	116
ACACTTCCTCCTGTAC	ref_285_fdr	0	0	0	0	0	0	1	0	0	0
TACTAATCCGTATGTG	ref_285_fdr	16	14	23	25	6	11	12	8	12	16
CTTATACGTCTCGTTA	ref_285_fdr	74	46	94	80	53	54	50	83	56	63
AGGCTCAGGAACGTTG	ref_285_fdr	104	112	153	123	125	104	124	110	119	122
CCGTCCGGCGGTATCG	ref_285_fdr	94	87	97	77	86	94	100	78	67	92
GAGGCGATCGCTGGGC	ref_285_fdr	11	7	10	8	7	9	5	5	14	6
TCAGCGTTTTAAATGT	ref_285_fdr	30	62	48	44	72	26	79	30	56	35
TGTGATTGGGTTTCTG	ref_285_fdr	81	73	90	79	101	90	88	77	103	80
GATCGGTTTGCTCTCT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
ATACGTTACGGATCTA	ref_285_fdr	46	44	51	45	39	49	27	35	40	40
GTACGTTCGCATCTCT	ref_285_fdr	122	78	119	107	87	112	98	90	92	95
TAAATTCTGGAATCAC	ref_285_fdr	56	53	66	64	50	48	58	78	59	44
TCGTTACCCTGCGTTT	ref_285_fdr	55	32	57	43	33	26	34	45	43	27
CGCCCTTTTTCCCCTG	ref_285_fdr	8	0	6	9	5	12	8	9	10	7
TTCGCTGCAGGAGTTA	ref_285_fdr	14	17	13	8	8	18	11	18	7	10
GTGGCCTTCTAGTAGC	ref_285_fdr	155	107	158	128	152	123	116	147	111	134
CACGTCAGTCAATGAC	ref_285_fdr	71	80	101	91	70	77	87	87	75	60
TGTTCGGCGAGTCGAT	ref_285_fdr	92	62	99	94	53	104	81	75	84	70
TCATCTATTACCCTTT	ref_285_fdr	23	28	31	42	26	26	20	38	32	26
TGTATTTGGCGGGATA	ref_285_fdr	111	117	196	135	116	130	122	131	126	107
AAATGTGACCAGGGGT	ref_285_fdr	80	83	93	96	99	72	82	92	79	69
TGGATCGTGGTTCCCT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCAGTCATGGGCT	ref_285_fdr	27	28	36	28	15	22	21	30	33	37
GCTATCATCGGCAATG	ref_285_fdr	1	0	1	6	0	6	4	4	2	4
GTCATTAGCGTTGGCC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTGTATCTCTAGA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
AGCCAATATCCGTGGG	ref_285_fdr	11	15	15	16	24	10	18	13	16	10
GTGCTACGCTAATCTG	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
GTGGATAGACTCCAGT	ref_285_fdr	30	20	30	30	27	33	12	24	23	21
GTCAAGTTTAAACGTG	ref_285_fdr	8	5	3	3	10	4	12	5	9	5
ATTTGAGACAGCTGGA	ref_285_fdr	22	16	21	14	16	23	30	13	12	19
CAAAGCGATTTATCGG	ref_285_fdr	75	79	107	89	90	95	89	92	103	82
CTCAGGTGTTTAAGGG	ref_285_fdr	55	45	62	53	43	45	37	43	42	39
CAAGCAAGCGTTTGGA	ref_285_fdr	22	7	17	16	12	19	25	19	18	18
CATCCTGTGGTTACAG	ref_285_fdr	35	43	38	39	48	27	27	24	43	28
CGTATAATTTAAGGAT	ref_285_fdr	65	56	85	69	66	72	59	56	71	59
TCTCGAACTGTGGTCT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
ACAGCCAGTTAGCCTA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TTAACTAGACTTGTCT	ref_285_fdr	8	4	10	13	9	11	10	7	9	12
CACCTCCATCCCGAGA	ref_285_fdr	6	2	1	1	4	5	5	3	4	5
CTAGCACCGAGTTGTG	ref_285_fdr	32	24	38	19	27	21	46	27	25	22
TCACGCCGTTATTATT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTAGTCAACAGTT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAGCTCGGGTATT	ref_285_fdr	29	33	23	42	35	32	23	47	32	35
TTTGTTGTATTCTTGC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TTCTATGGCTTACCGT	ref_285_fdr	0	7	2	0	2	4	3	0	0	4
CGCTTTCAGCGTTCGC	ref_285_fdr	13	7	14	14	4	5	6	7	15	6
CCCTTGTGTCAGGTTG	ref_285_fdr	46	43	47	52	44	42	44	34	50	42
AGCGTTAATGCGCTGA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
AATCCTCAGTGTTATG	ref_285_fdr	42	35	39	31	30	35	31	28	31	30
TCTAATTATGTTTAAG	ref_285_fdr	59	67	71	59	61	75	56	48	56	59
TGCCAAACGATCCGTG	ref_285_fdr	5	6	9	10	7	10	8	9	13	6
CTCTACCGGCGATAGA	ref_285_fdr	32	29	18	30	34	35	31	29	21	28
CGATATGCTCTATGAT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
GACGTACGTTGACCGC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTCATGCTGGTGC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCATCTTCGCCTC	ref_285_fdr	62	93	84	56	74	60	119	53	87	47
GTTCGATGGTTAGTGT	ref_285_fdr	38	29	33	31	22	28	36	13	40	33
GATCCGGGGTCTATAG	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
AACGCACTTAATGCGT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCCCGTGTACAAA	ref_285_fdr	59	50	88	75	57	76	45	83	55	51
TCCCTCCTATCTCGTG	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTAAATAACGCCT	ref_285_fdr	6	6	10	7	13	17	14	7	11	12
GGCATCTTGTTGAGTA	ref_285_fdr	49	35	55	43	42	41	33	48	44	46
ATTTAGCCTGTCGCTA	ref_285_fdr	10	23	20	18	12	23	12	22	13	11
CATCTAGCATAGATCT	ref_285_fdr	125	115	175	162	153	176	136	149	149	134
GCCGCATGCCGATATC	ref_285_fdr	39	38	44	48	42	32	42	51	42	34
TCCATCGCTCGCCTCA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCAGCTGTTGATT	ref_285_fdr	58	59	63	53	47	53	40	51	46	63
CTTGGTGTTTCATAGT	ref_285_fdr	45	34	48	34	29	44	43	31	29	27
GCTTACTGGACTCAAG	ref_285_fdr	36	37	36	33	34	33	34	46	35	33
CACGCGAGTATTAGCT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGGTGTCCCTTCG	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCACTCAATGGTC	ref_285_fdr	55	63	54	53	52	39	59	45	45	40
GACGTCCTTACATCTG	ref_285_fdr	4	7	4	5	4	9	6	6	5	5
TTTTTAAAACGCGATC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TATTCTGTCCTTCCCT	ref_285_fdr	6	6	8	7	6	8	2	6	1	1
TGAAGGTCTACTCCGT	ref_285_fdr	29	33	47	35	37	32	28	24	34	19
AGATCGAAGGCCATTT	ref_285_fdr	20	8	10	10	13	9	9	7	15	10
TCTAGCGATATAAGTC	ref_285_fdr	10	26	29	14	19	19	16	6	22	19
GGCTTCGAGTATAAGG	ref_285_fdr	25	19	20	22	25	21	25	23	21	25
AGGGCTCACTTGTGGG	ref_285_fdr	88	81	119	98	98	95	91	75	95	85
TTTTCCGGCACATTCA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TTATATTTGTACATCC	ref_285_fdr	6	7	9	4	7	7	8	6	7	11
GCTCTTGGCCTACACC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTGGAGGGCCTAA	ref_285_fdr	44	46	72	54	44	54	54	45	56	51
TTCTGCTTGTTCGTGA	ref_285_fdr	19	34	24	23	27	26	25	27	35	17
GTGGTTGCTGTTGAAG	ref_285_fdr	10	13	18	12	8	10	10	11	10	10
AATTATTGCATGTACA	ref_285_fdr	13	14	14	14	12	18	9	11	17	11
CCAGGGCTACTGGACC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCAGACGGGACTA	ref_285_fdr	50	50	55	70	44	61	61	50	56	43
ATTGAGTGACACATGG	ref_285_fdr	49	27	62	44	44	52	48	46	36	42
TCCCATTAATCATCGC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGAAAGGGATGGG	ref_285_fdr	0	1	0	0	0	0	1	0	0	0
TAACTGGGGCTGAGTG	ref_285_fdr	0	0	1	0	2	2	0	0	0	0
AGTCAGAGTTGCTAGA	ref_285_fdr	0	6	3	6	6	4	5	4	3	8
CTTGCGTTGTGATTCC	ref_285_fdr	76	60	73	86	80	69	76	65	60	57
AAGTCACTCGTTAAGT	ref_285_fdr	16	39	19	25	29	18	27	20	38	19
TCGCCACAGCTGATAG	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
AACGCTGTGTACTTTT	ref_285_fdr	6	6	18	13	12	9	6	5	6	9
TTTTCACAATTCTCGT	ref_285_fdr	101	113	151	100	129	105	125	118	126	84
CGAGCTCGGACATTAT	ref_285_fdr	7	7	6	6	4	9	18	4	4	8
AGCTTTATCCCCGCAA	ref_285_fdr	3	4	6	5	2	4	2	4	9	6
GCTTCACGTTTATAGT	ref_285_fdr	17	25	28	20	9	21	14	12	20	14
CGTTAAATAAATTCCA	ref_285_fdr	27	31	57	30	35	35	26	33	42	18
ATGGTTGATGCTCGCC	ref_285_fdr	62	40	72	75	62	60	52	60	49	42
CCTGGCGACACCAATT	ref_285_fdr	22	25	36	13	35	36	23	31	22	25
ACCCGTGAGTGTAACA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CATACTTTTACTTTAA	ref_285_fdr	13	15	15	23	14	16	8	23	19	18
GTGCAGGTGTCATGTT	ref_285_fdr	6	7	9	11	2	1	3	2	10	4
TCCAGGGTGTATTTAG	ref_285_fdr	16	17	23	22	9	18	23	12	18	17
GGACATCTAAAGCGTT	ref_285_fdr	128	125	181	140	141	126	105	124	101	132
GCCGGCCAGGGCAATC	ref_285_fdr	2	4	0	1	1	1	5	0	2	0
TGTTTCCGGCACTTAC	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCCCTATTGGTTA	ref_285_fdr	67	58	45	68	51	43	54	52	52	43
CCACCCATCTGAGTAC	ref_285_fdr	2	13	2	1	10	1	20	1	15	2
GTACTCCGGATTTTAA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CCGCATAGTGCATTGA	ref_285_fdr	20	48	32	24	55	21	50	31	56	30
ATGGATCGGATTACTG	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
GGCATGGTTGTTAGAC	ref_285_fdr	7	9	13	7	9	5	8	7	4	5
AACGCTATCGTAGTTA	ref_285_fdr	18	37	32	56	26	32	36	28	28	21
TCCATGGAACTCTCCC	ref_285_fdr	99	111	138	110	111	95	130	120	142	92
ACGGGCTCGCCATTTA	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGGCTATTAATAG	ref_285_fdr	30	23	33	24	23	35	31	32	25	31
CAGAACTCTTAGGTTC	ref_285_fdr	15	28	27	22	27	25	27	26	31	19
CGTGTGCACTTATCTT	ref_285_fdr	0	0	0	0	0	0	0	0	0	0
CGTAAATTACTCTGGA	ref_285_fdr	5	2	7	3	4	7	4	5	4	5
CCAGTCAAGCGTTGCT	ref_285_fdr	55	71	66	58	64	48	78	53	65	44
TCCGAATTTAATCGGT	ref_285_fdr	50	65	55	51	55	61	57	49	61	43
GATTGTCGAGGACAGC	ref_285_fdr	16	13	26	16	16	20	21	17	22	18
TTCTTCCCTGGCAGAT	ref_285_fdr	45	30	40	52	36	34	25	36	43	31
AAGATATGTCCTTTCG	ref_285_fdr	24	12	21	23	19	16	16	17	21	23
GGGCATTGGTTGTTTG	ref_285_fdr	9	5	10	3	5	6	4	2	10	7
GCACAGTTCAACAAGT	ref_285_fdr	3	3	6	4	4	6	2	2	6	3
AAATGACTTCCCCTTT	ref_285_fdr	35	30	17	34	38	24	37	22	45	26
ACTGTTGGCTTGGTGC	ref_285_fdr	3	5	8	11	6	6	8	10	4	3
CCCGCTCATTCATCTA	alt_5812_new	0	0	0	0	0	0	0	0	0	0
CCACGGCTCTGCGTCG	alt_5812_new	0	0	0	0	0	0	0	0	0	0
TTTAAGTCTAGAACAC	alt_5812_new	0	0	0	0	0	0	0	0	0	0
TGGCTGGACCTTGACA	alt_5812_new	21	38	20	16	28	19	31	11	36	12
GGGTAAGCGATGATAC	alt_5812_new	10	16	7	6	13	10	15	7	30	8
TTGAGGTTAATGCTTG	alt_5812_new	23	51	35	24	53	25	64	25	68	26
CTATAGAATAAGTTTT	alt_5812_new	12	24	27	10	42	17	27	13	42	12
CAGACTGCATTGTTTG	alt_5812_new	70	224	98	83	187	89	223	76	181	57
CTAGCCCGGTTATAAT	alt_5812_new	13	36	13	4	38	10	31	11	51	8
AGGGTTCATTCGTTCA	alt_5812_new	59	102	87	67	123	70	130	64	141	75
CAAAGTTATCAGCTTG	alt_5812_new	41	62	43	25	59	31	59	32	60	31
GGCTCAATCCAGCGCC	alt_5812_new	25	66	47	31	82	42	70	43	72	32
CTTTCCCCTATTGCTC	alt_5812_new	34	128	50	29	115	34	126	22	115	40
CCGATGTGTGGGTAAC	alt_5812_new	0	6	1	2	6	7	9	4	5	3
CTTTTCGACCCGCAAC	alt_5812_new	0	3	2	3	3	4	6	2	3	6
TAGGAAGACGTACAAC	alt_5812_new	0	0	0	0	0	0	0	0	0	0
GCCTGGGTCTGTGCTG	alt_5812_new	10	55	6	8	74	10	55	10	58	3
ATTATTCAGTAGCCCG	alt_5812_new	103	183	96	91	176	98	169	95	185	90
CCATTGGGCATGTAGG	alt_5812_new	19	46	14	22	45	5	39	17	45	6
CTTATATCGTTTTACC	alt_5812_new	16	18	23	17	22	14	38	16	38	5
CAGTGTCCGGTTATCT	alt_5812_new	35	99	59	62	87	51	91	45	90	37
CCAGCGCACTTAGTGA	alt_5812_new	0	0	0	0	0	0	0	0	0	0
GGTCCCCGTTTATAAG	alt_5812_new	4	12	2	4	12	2	9	1	16	2
CGGGAATTGGCGTGAT	alt_5812_new	37	84	63	46	101	31	86	35	91	36
TGCACGTCCCTAGATC	alt_5812_new	48	115	51	60	110	48	111	34	133	37
TTCCACGAATGTCTTC	alt_5812_new	33	91	32	43	84	43	72	49	94	35
AACCCAGATAGTTTTC	alt_5812_new	7	21	6	6	27	11	19	6	33	4
TAGAGGATGTTTGTCT	alt_5812_new	8	15	9	7	24	8	13	9	23	6
TCTCTTGCTTTTATTC	alt_5812_new	14	18	25	12	25	6	21	11	32	10
TGGGGATGCTTGCATA	alt_5812_new	0	0	0	0	0	0	0	0	0	0
ATCGTATTCCTGTGAC	alt_5812_new	77	157	88	68	174	59	155	69	173	65
ATAGTCCTTTTTTTTG	alt_5812_new	53	60	55	34	97	34	85	27	85	44
AAAAGCAAGCGACCCT	alt_5812_new	11	14	5	8	14	6	15	8	17	7
CTGAGTAACGCAGTCC	alt_5812_new	10	22	13	14	18	8	31	11	12	7
TTTCGGTTAAGTTCGG	alt_5812_new	2	8	3	2	2	4	3	0	4	3
CGCACCCTTCTATCTT	alt_5812_new	17	38	24	14	38	17	43	11	39	11
TTCACCTCACGGTCGG	alt_5812_new	4	3	1	5	4	3	4	4	0	5
ATGTTTGGGAGTGTTT	alt_5812_new	9	16	8	7	33	5	27	7	16	9
GTACTACGATCGACGT	alt_5812_new	4	17	1	6	8	4	10	3	15	1
CTAAGTTTGCTCCGTA	alt_5812_new	43	54	40	27	73	35	56	35	85	28
CACATAGTGCTACCTC	alt_5812_new	1	11	5	3	8	6	9	0	13	1
CGGAGATAAAACGACC	alt_5812_new	18	24	22	24	29	14	34	11	37	22
CCTCTCGGCATTTAGC	alt_5812_new	61	97	72	84	154	55	136	63	131	73
GTACTAGATCTTGGCC	alt_5812_new	5	7	6	4	9	3	15	3	12	4
GCGTAATTGCTTCTAT	alt_5812_new	17	29	18	13	25	20	29	14	46	15
GCCGAAGGGGTGACTT	alt_5812_new	0	0	0	0	0	0	0	0	0	0
ATTTAGCTTTGCACGG	alt_5812_new	106	236	139	102	253	105	248	108	219	105
TGATACCACAGGTGAG	alt_5812_new	25	67	33	24	71	30	60	17	66	32
GGTGCTATGGAAAGAT	alt_5812_new	26	47	25	20	46	24	45	16	62	23
AGAAGAGATCTCCCGT	alt_5812_new	71	156	78	76	123	69	171	83	161	58
GATCCTGCGCTTCTTC	alt_5812_new	6	9	8	7	7	4	6	6	11	3
TATCTCTTGTGCAAAC	alt_5812_new	21	51	23	16	45	15	45	19	49	21
TGATGTTGGCCTGTTT	alt_5812_new	31	99	49	27	83	44	96	37	101	32
AGGTTATTCTACGCCG	alt_5812_new	33	61	29	15	53	16	55	29	60	33
TGGTCGTCACGCCACT	alt_5812_new	6	27	11	9	20	7	16	7	22	13
TGATATCTTAACCGTT	alt_5812_new	2	1	0	2	5	0	0	1	1	1
CGCAATAATTCTGCGC	alt_5812_new	61	123	64	55	138	73	142	57	137	50
GTCTTCGTTAATACTT	alt_5812_new	0	16	2	1	0	0	4	0	2	0
CGCTTACAGTCATATC	alt_5812_new	13	19	11	16	23	4	22	8	22	8
CTGGTCTCCATACGCT	alt_5812_new	22	57	31	32	48	19	53	16	52	19
AAACTGTAGCTTTCAC	alt_5812_new	58	110	67	45	108	41	115	42	112	43
TTACAGTTCTGCCGTC	alt_5812_new	8	30	11	10	27	15	23	10	31	10
CAATTTCAGATCACTG	alt_5812_new	0	0	0	0	0	0	0	0	0	0
TTCGTCTGATACGTCA	alt_5812_new	50	102	62	31	106	41	128	37	89	43
GTGATTGCAATATAGG	alt_5812_new	0	0	0	0	0	0	0	0	0	0
TTTCTCCATCGCTAAC	alt_5812_new	30	63	34	33	63	48	72	29	61	34
CTCTCCACATATCCAT	alt_5812_new	49	100	46	51	118	42	131	56	112	41
GCAATTGGCTGGTCTC	alt_5812_new	35	68	44	44	88	37	91	38	94	30
CTCAAAGCTATTGGAT	alt_5812_new	3	18	4	7	17	1	17	6	12	5
TACTTTTAGAAGCGAC	alt_5812_new	19	42	27	21	47	20	49	21	46	24
ACGCCTACATGACGTG	alt_5812_new	13	33	23	7	29	14	32	13	32	19
GACTTAGTAAGTGGCT	alt_5812_new	31	101	45	32	95	40	104	35	117	40
ACTCCTCAGTACTACC	alt_5812_new	0	0	0	0	0	0	0	0	0	0
AATTAGGAATCTTTTT	alt_5812_new	24	32	22	40	33	29	42	25	66	21
CAGATAAAATGGTCCC	alt_5812_new	0	0	0	0	0	0	0	0	0	0
CACGGCGCTCTAGAAC	alt_5812_new	0	0	0	0	0	0	0	0	0	0
AATAACTCTGACGGGG	alt_5812_new	33	53	50	35	70	35	92	34	63	37
GTTTTTCAGCCGAGTG	alt_5812_new	5	9	7	10	14	5	7	7	8	2
TCTCGAGGTATGAACT	alt_5812_new	30	76	44	39	75	47	75	39	79	36
TTTTCTCACTCCGACG	alt_5812_new	0	0	0	0	0	0	0	0	0	0
TTTATGGAGCCGCATA	alt_5812_new	13	12	9	9	18	5	22	8	15	4
CGAGTTTGGATCCGCA	alt_5812_new	16	21	20	17	33	21	35	25	39	28
TGCTGATGGAAGGTGT	alt_5812_new	27	80	34	40	74	32	80	35	89	44
AAGTGTGTGAGCCGTC	alt_5812_new	16	43	21	30	30	20	29	16	35	16
GTACGGCGGCCATCTG	alt_5812_new	9	13	19	8	31	8	32	11	29	14
TGTAAATCCGGTAATC	ref_496_missing	58	46	92	84	46	69	69	66	57	60
CAGTTCCTGTTATTGG	ref_496_missing	6	9	19	13	10	11	10	11	13	14
GCAATGTTCTTTGGGG	ref_496_missing	58	34	72	68	50	59	35	46	43	59
TAGACTTCCTGCATAG	ref_496_missing	14	4	12	12	12	4	6	11	7	13
CTTAGGACTGGGGAAC	ref_496_missing	0	0	0	0	0	0	0	0	0	0
GCGTCGGTCGGCCTCC	ref_496_missing	45	38	59	35	41	46	44	37	47	41
CGTCAGCATAAGACTA	ref_496_missing	0	0	0	0	0	0	0	0	0	0
ATGGTTTCCGGGTTAG	ref_496_missing	37	34	51	36	30	35	20	32	27	31
TCTCTGCTTCCAACTC	ref_496_missing	0	0	0	0	0	0	0	0	0	0
AGCCTTTCTTAGACAG	ref_496_missing	13	7	20	26	10	17	14	17	17	10
TGGGCGTACATAAGTG	ref_496_missing	0	0	0	0	0	0	0	0	0	0
TGGAAGAGGCAGAGGT	alt_3077_missing	41	26	44	57	41	37	40	31	32	29
TTCGAAAGCGAGCATG	ref_3077_missing	29	42	54	43	41	28	35	41	23	33
CTTTATTTCCCCTTCA	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
GGTTCATTCCACCGGT	ref_3077_missing	33	24	36	27	22	36	33	37	19	23
TGTATGCAGTCTATAC	alt_3077_missing	4	8	10	4	2	3	6	5	6	5
CTAGAAGTTGAGGTTC	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
CGTTTCGGTAATATGG	alt_3077_missing	325	279	368	323	201	280	247	285	213	308
CCTTCCGCATGTCTCC	ref_3077_missing	0	0	0	0	0	0	0	0	0	0
TAATTGGCCCCTAAGT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
GGAATTCGACCTTAAT	alt_3077_missing	4	13	9	6	5	11	9	8	6	6
GATGCGCTTGAGTATT	alt_3077_missing	8	4	3	6	3	8	3	6	2	3
AGTTTCAGTTCCCGCT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
CAATTGCGCATAATCG	alt_3077_missing	70	58	89	82	63	57	88	65	87	71
TGGAACAACGACTGCG	alt_3077_missing	17	4	17	15	7	11	13	11	6	15
CGGTCCGGCAGTGCTA	alt_3077_missing	3	7	1	4	9	1	7	0	11	3
AAGTCAAAGGTTTGCC	alt_3077_missing	12	14	30	16	19	11	10	16	17	17
TCGTACCATTGCCAGC	alt_3077_missing	55	62	60	56	59	64	47	45	51	60
TAAGAAACGCTGACCC	alt_3077_missing	68	67	103	77	67	79	70	54	67	71
CTAGAAGAGGCACCAC	alt_3077_missing	5	6	4	3	7	3	2	3	4	3
TTGTTTCTGACGTTGT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
TCATCTTTCCACGGAC	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
CTCCAAAATCATAAGG	alt_3077_missing	103	109	152	116	100	108	140	98	117	105
AACAGTCGTTTGTGTA	ref_3077_missing	73	79	76	71	70	80	69	62	64	62
ACAGGATCTATTAGCC	alt_3077_missing	9	18	18	8	15	17	15	15	8	14
GGTATCGAGAGTTTGC	alt_3077_missing	11	23	20	20	21	18	12	13	18	19
GATATTACCCGAGGTG	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
AGTTCGTTTACCGCCA	alt_3077_missing	27	21	36	22	30	23	25	32	17	18
AAAATTGACAACCTCC	alt_3077_missing	7	6	5	8	4	11	10	5	13	8
TAGTTTTTCGTAGTAT	alt_3077_missing	10	14	6	9	3	5	3	5	5	1
CGACTTGTTCATGCTC	alt_3077_missing	13	10	25	18	21	14	25	16	11	12
AGTTGTTTATTAAATG	alt_3077_missing	35	26	49	37	20	28	37	32	38	27
GCTTGTTGCTTTAGGA	alt_3077_missing	13	13	25	19	17	26	18	14	19	18
CGTTCACAATCTACGT	alt_3077_missing	2	0	11	8	12	8	6	7	5	10
ATCTCTAGATAGTTTG	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
CTCCCTCGTTTACTCT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
GGCTTTGTACTCAGTT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
CTCTCCTCTTCGACGC	alt_3077_missing	84	68	94	73	85	69	78	76	85	69
GGCTAACATTAGGCGA	alt_3077_missing	65	43	71	64	42	50	41	52	44	56
TCTTTATCAGGGGTAT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
AGTCTGCGGGCGGACA	ref_3077_missing	3	8	2	1	4	2	6	2	5	1
TTCGGCGTGTACTATA	alt_3077_missing	52	71	79	66	66	65	73	62	63	52
ACGAATACGCATATTC	alt_3077_missing	5	3	2	5	2	4	2	3	0	2
TTTGTTACTGCGAAGC	alt_3077_missing	17	13	13	22	16	9	12	13	9	15
CTTTTTCCTAACCATT	alt_3077_missing	20	12	29	22	11	18	15	17	17	21
GCATCAGGTGCAAAAA	alt_3077_missing	4	8	12	4	7	3	6	2	5	3
AGTAGGAACCATTTGG	alt_3077_missing	31	19	27	28	31	23	25	26	29	25
TCATTCGAAAATATTC	alt_3077_missing	2	6	1	3	14	3	10	2	7	2
CCCAATTGCTGGCTCG	alt_3077_missing	108	111	160	124	117	122	99	109	122	105
AGGTATACTTTGGCCT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
TTCATTCTTGTAGCAC	alt_3077_missing	11	5	13	10	9	9	6	9	7	7
GTATCCTTATACATTG	alt_3077_missing	6	8	5	14	5	14	4	8	10	3
AGTTAAATTACTTAAT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
GCTAACGTCACCGAGT	alt_3077_missing	24	18	26	11	10	25	15	11	20	24
TCGAGTTCATAGACGT	alt_3077_missing	14	11	17	10	11	13	19	17	14	12
TGTGGCAATTACTCGT	alt_3077_missing	7	4	6	4	5	9	1	3	3	4
CACTCTCCTTGGGTTA	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
AAAGGCGTCGTTGAGT	alt_3077_missing	5	6	15	9	4	5	10	10	8	3
GTTCCAACTGTTTCTC	alt_3077_missing	100	98	121	123	118	117	123	96	86	111
TCATCTCAATAACAGA	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
ACTTTAATCGGTAGTC	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
ATATCCGGGCTTACAC	alt_3077_missing	51	48	65	57	49	30	43	57	52	52
CATGGATCCGTCCATA	alt_3077_missing	5	4	8	3	7	5	2	4	10	5
TGCCATTGCCCGCGTG	alt_3077_missing	19	8	33	27	19	25	20	23	15	17
CCATATTTGAGGGGCT	ref_3077_missing	18	23	32	30	23	25	22	24	15	26
AGACCGCTGCGGTAAT	alt_3077_missing	20	14	17	17	27	9	24	12	21	14
ATTCGGGGTGATCGAT	alt_3077_missing	104	99	126	106	124	94	82	98	78	103
AACAGTCTACCTTCGG	alt_3077_missing	6	24	16	17	16	17	14	21	3	14
TGCCTGATTCGTAAAA	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
TTTGCCGAACGCTCAG	alt_3077_missing	9	13	10	3	12	3	8	12	6	6
GGTCTTTTTACGAGTT	alt_3077_missing	52	50	77	60	56	53	43	62	65	62
TTCGTTGACGCGCGTC	ref_3077_missing	0	0	0	0	0	0	0	0	0	0
CTTAGTAGGTATCGTT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
GTCCCTGTTGTTTCAA	alt_3077_missing	31	29	37	30	23	30	35	34	31	30
ACCCCGCAGGCGCTTA	alt_3077_missing	16	18	23	10	10	19	12	18	14	12
AACTTGAGTTTTTTGC	alt_3077_missing	11	2	9	10	8	11	8	12	7	5
CCCTGTCCTCCAGGAA	alt_3077_missing	1	4	4	6	7	5	5	2	5	3
GGTTTCTGCTGCCCGG	alt_3077_missing	28	21	37	34	19	23	20	42	31	25
CACCTGCGATGGAAAT	alt_3077_missing	86	51	73	59	64	54	62	74	54	72
TTCCACTTAAATCTGA	alt_3077_missing	8	3	8	8	3	9	7	9	3	3
GCGAGCCGTTCCCTCT	alt_3077_missing	18	11	20	21	10	9	20	6	17	13
CGAGGTTAATCGTCAT	alt_3077_missing	27	18	21	25	27	27	29	26	35	16
AACCTGCCCTGAGGTA	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
ACGGACCTTGTCTCTT	alt_3077_missing	21	19	20	15	20	12	6	8	20	14
TCCTACAACTAGGCTG	alt_3077_missing	10	13	7	8	12	13	14	3	13	9
CAATTGTTTTGCCTTT	alt_3077_missing	48	46	44	64	36	52	43	45	42	42
GTTTTCTTACGTTTGA	alt_3077_missing	54	46	76	79	60	55	48	80	68	55
TGCCAGTTAAGGAAGT	alt_3077_missing	15	14	26	16	24	14	17	21	26	12
GTGCCGGTTATCGCTA	alt_3077_missing	35	37	44	36	40	29	30	30	40	20
CTTTCCCCTTGTCGTG	alt_3077_missing	6	15	12	3	12	11	17	6	8	2
CGGTGATTATGACTCA	alt_3077_missing	36	24	31	32	38	40	18	22	24	31
GGCCGTCTCTGTGCGC	alt_3077_missing	16	24	19	28	17	21	25	16	27	18
TTTTCAGTACACCCTA	alt_3077_missing	24	38	26	42	40	22	51	25	44	27
ATTTCAGTTATAGCCT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
GCTTTGCCGCGTCCGT	alt_3077_missing	0	0	0	0	0	0	0	0	0	0
GGCCGCTTCTAATAGC	alt_2028_upstream	14	29	11	16	18	12	21	14	18	10
ACATTTTTCTCGTTGT	alt_2028_upstream	31	46	54	44	53	43	62	37	54	31
TTCTTCAGTCTTTGCT	alt_2028_upstream	9	26	10	9	19	16	20	16	12	5
ATTGCGCAGAGCTATG	alt_2028_upstream	19	31	29	19	28	16	46	28	34	14
GTTTTCAGTTCTTATC	alt_2028_upstream	2	3	4	2	5	2	4	3	5	1
TACTGGCAGTTACACC	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGGCTACTGTAGT	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTACTGCATAAGC	alt_2028_upstream	23	41	32	29	32	27	32	20	41	30
CCTGATATAGTGGTCG	alt_2028_upstream	4	33	11	8	28	12	39	19	24	11
GGTAGTACTGATTACA	alt_2028_upstream	25	20	25	13	15	19	21	17	20	17
CGTTGCCTCTCCTGAA	alt_2028_upstream	1	5	2	2	3	5	6	5	5	2
CATAGGTTTGCAATAC	alt_2028_upstream	3	6	4	4	8	5	8	7	10	6
TCGCATACCATCCACC	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
AATTGAAGTCAAAGGA	alt_2028_upstream	5	13	8	5	2	8	7	4	7	7
TATGTTGAATTTCCAG	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTTTATCTGGCTT	alt_2028_upstream	1	0	0	0	0	0	0	0	0	0
CTGGAATGTCATTTTG	alt_2028_upstream	4	6	2	10	2	7	1	6	1	1
AGGTGTATGTTATGGT	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
GTGATGCGGGTGACCA	alt_2028_upstream	3	9	4	1	2	4	8	5	4	5
ATAAGCTGTGGGTTTC	alt_2028_upstream	1	3	3	3	4	4	5	5	5	3
GATTCCAAGGAGTGCC	alt_2028_upstream	0	3	3	2	1	2	0	2	2	3
GTACACATTGTTCGAT	alt_2028_upstream	60	98	104	83	99	80	107	57	116	58
TGCCATGCTGGACAAA	alt_2028_upstream	28	39	28	29	37	21	49	40	49	24
TGCCTGGGTGGTATAA	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
AGTCGCGATGAATTAT	alt_2028_upstream	16	25	30	17	24	13	19	13	22	13
TGGAGCACCATTGTGC	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGTGGCTACATCC	alt_2028_upstream	62	69	53	53	65	45	76	54	60	50
CGTGAATGCGCGGTTA	alt_2028_upstream	38	49	48	32	44	32	61	35	55	33
TGGCCTAACCTTTGGA	alt_2028_upstream	12	27	27	16	28	16	34	16	17	13
CCTTAATCCTCTAGGG	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTCGTTAAACCAG	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
CATTCCTCGAGGGTGG	alt_2028_upstream	18	20	23	10	27	15	26	13	27	16
GGACTCCATTACCATT	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
GCTACACCTACTCACG	alt_2028_upstream	23	55	24	29	39	16	42	21	42	25
ATTTAGGTATTCCTGG	alt_2028_upstream	50	61	61	53	78	51	56	40	54	40
GTCACTCTAGGTTACT	alt_2028_upstream	19	13	27	12	18	21	31	16	26	14
GGTGTCGTTTAACCCT	alt_2028_upstream	11	8	8	14	16	13	21	6	20	14
GTCTGACGAACGATGA	alt_2028_upstream	3	3	1	2	5	2	7	2	2	3
GCGCCCGCTATTCAGG	alt_2028_upstream	90	155	102	83	149	114	171	99	176	90
TGACTCTGATATTCGT	alt_2028_upstream	6	10	10	8	9	3	7	2	8	5
TCATGACTCATCTTTA	alt_2028_upstream	13	13	12	8	12	9	7	8	16	7
TTTAAGCCGAGTCGCT	alt_2028_upstream	125	144	152	119	149	105	139	126	132	114
CCAGATAGCCGCCAAG	alt_2028_upstream	1	9	2	3	16	1	18	1	14	2
CTTACCTCTTCTGATT	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAAATAGAGGATC	alt_2028_upstream	6	1	5	1	5	3	5	2	4	4
CTTTTACGCTTATTAA	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
GATATTGGTCATATTC	alt_2028_upstream	52	85	77	49	69	55	75	48	77	53
ATGTCTATCCGGTATG	alt_2028_upstream	2	6	13	7	4	6	5	5	9	10
TCGTTTCCCAAGCACA	alt_2028_upstream	36	19	36	21	37	27	25	19	30	30
CAGAGTCGTTAACGGG	alt_2028_upstream	28	34	38	29	39	21	46	23	42	31
TACCCTTTATACGGGT	alt_2028_upstream	74	81	67	72	83	58	97	53	80	45
CTTCTATGAGCCCGAG	alt_2028_upstream	4	12	9	4	6	8	13	6	8	3
CACCACCAGATTCGAA	alt_2028_upstream	42	69	57	48	59	37	89	47	64	23
AAGGTTCATTGTAATT	alt_2028_upstream	17	24	26	14	21	21	28	20	25	12
CTGTGTTGTACTATGA	alt_2028_upstream	3	6	4	6	6	2	4	3	7	0
CGGTGCATGCCCCGAC	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTTTACTAAGTTC	alt_2028_upstream	28	32	33	24	38	34	38	37	39	26
CTGTGGGCCTTTGTAC	alt_2028_upstream	25	49	18	20	49	18	51	30	49	16
CCCTGGTGTGAGGATC	alt_2028_upstream	29	47	29	28	61	30	44	25	56	27
GATCGCCAGGTGCTAT	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGCATGAACTAGC	alt_2028_upstream	17	33	32	22	41	29	27	21	25	14
CTCGTAGATACCTAGC	alt_2028_upstream	3	3	0	0	1	2	2	0	1	0
CCTCCTTTAGCTCTAA	alt_2028_upstream	23	100	32	26	90	23	76	16	95	22
ATTGCGGCGTGTATAC	alt_2028_upstream	20	27	18	17	31	16	25	15	28	14
TACTTCGCCTTAGGTG	alt_2028_upstream	19	22	18	21	19	13	20	6	20	17
TTTTCAGAAAAAGCAT	alt_2028_upstream	80	99	110	62	89	69	102	62	122	62
GACCTACCTTTTGTTT	alt_2028_upstream	2	16	2	7	7	5	14	2	14	2
AGTTCAGTCCCGCTAA	alt_2028_upstream	17	45	34	27	38	26	29	21	45	20
GTTGATTACCCGCAAG	alt_2028_upstream	26	33	37	38	34	28	34	19	32	26
GATCTGGGTATTCCGA	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCTGCTTTGCGGT	alt_2028_upstream	25	28	27	30	36	23	29	12	41	14
ACCGCCCGAGCGACTC	alt_2028_upstream	105	138	121	76	138	104	145	76	152	89
CCGTATGCATATCTTA	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
AAGACAATGGTTATAA	alt_2028_upstream	81	111	106	91	87	71	100	81	101	67
CGACAGTGGATCTAAG	alt_2028_upstream	10	15	11	13	31	10	33	19	29	9
CACATGTGACATTATG	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
GCATGGATTGGCCCGA	alt_2028_upstream	68	110	97	73	134	68	134	91	110	86
CAGCAGTCACCCTCGG	alt_2028_upstream	41	56	47	41	64	34	64	41	51	33
AACCCGGATTGGGAAT	alt_2028_upstream	6	11	5	7	3	3	8	3	6	4
CGCGGATCCAGGTAGT	alt_2028_upstream	42	44	37	25	55	34	64	27	70	30
ATCAGGGGTCGTACCT	alt_2028_upstream	34	60	48	45	53	30	49	31	44	24
GAGTAAGCTCCCTTTG	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
AGATGGTTCTATGCGT	alt_2028_upstream	5	12	5	1	9	3	6	5	6	4
GTATTTCACGGCCGTC	alt_2028_upstream	6	19	6	8	8	13	14	4	14	4
CCACCGCGGCTGGCTG	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
CATTCGCCATGTTGGC	alt_2028_upstream	61	111	65	48	111	49	108	46	129	44
AGTAGCCTTGGGTTTT	alt_2028_upstream	28	33	20	28	40	16	38	30	24	28
GGGGTTTTGGCTTGCC	alt_2028_upstream	18	16	17	14	7	15	17	8	25	10
AACAGTACGGGCTTCA	alt_2028_upstream	12	13	5	9	8	11	9	7	13	7
GGAACGGTTCACCTCA	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTGCTCGACTACG	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
GTATTCTTGGACATGG	alt_2028_upstream	61	81	62	56	91	54	76	52	97	56
AAGGCCCACTCCTCAC	alt_2028_upstream	2	26	2	4	19	5	30	4	23	4
TAGGATAATACCTCCC	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCAGCTCTGCATC	alt_2028_upstream	59	128	104	84	122	73	141	66	127	71
GGTTGCTTCTGCTAGT	alt_2028_upstream	1	2	0	1	3	0	3	0	1	1
GCGGTATGTTCTTATG	alt_2028_upstream	23	27	23	26	34	15	34	11	22	20
TTTTCACTTTAAGTCG	alt_2028_upstream	55	58	50	61	69	41	61	65	85	45
CGCCATTTCTGTGGTT	alt_2028_upstream	10	50	11	12	75	23	48	11	55	14
GCAAAATAAATTGCAC	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGCGCAGCCCTCG	alt_2028_upstream	12	19	23	11	23	21	26	15	34	11
TGTCGGGGGACCTCCA	alt_2028_upstream	76	85	85	85	109	72	91	60	83	74
GAGCATGGACCTCAAC	alt_2028_upstream	44	30	30	34	48	32	55	29	31	30
GATTGCGATTTCTCTC	alt_2028_upstream	14	11	5	9	6	10	21	7	21	8
CAGCTGGACCTCCAGC	alt_2028_upstream	8	29	11	10	29	9	36	17	36	3
CAACTCTAAATCTTCT	alt_2028_upstream	34	59	46	37	57	57	76	33	57	32
GGAATGTATGGGACTA	alt_2028_upstream	37	57	42	30	83	40	52	52	81	47
GGGGGATTCGTGATGC	alt_2028_upstream	66	93	89	70	106	61	111	62	108	69
CTCGCTCAAGAGGGCA	alt_2028_upstream	16	24	16	11	19	8	18	20	21	14
GGTTATCTCAGATTAC	alt_2028_upstream	54	69	45	38	49	34	55	32	68	38
GTGGACAGTATATCTT	alt_2028_upstream	5	16	8	9	7	5	9	13	15	3
TGATTGGGCGTTTTCT	alt_2028_upstream	9	16	15	19	8	12	7	13	14	2
CAGCTCCCGTCAAAAC	alt_2028_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCGTGTCTTCGCC	alt_2028_upstream	6	59	18	18	69	16	85	15	54	11
CGCTTTCTTGGTCACT	alt_16_upstream	53	87	44	42	65	43	92	32	95	49
GGACTTTGCACGGATT	alt_16_upstream	28	50	38	19	52	32	49	35	45	24
TCGGGCAACGCTTTCA	alt_16_upstream	2	4	6	4	15	5	12	3	3	4
TTATGTGCTTAATCGC	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
CATGGAGGCCGCCTCT	alt_16_upstream	22	33	31	27	39	25	30	22	46	27
CCATCGTTTCTACATA	alt_16_upstream	6	9	7	7	17	4	14	6	10	4
AATGCAGATGCTTTTA	alt_16_upstream	8	15	3	9	28	7	16	8	11	10
GTAAGCTTCGCGTCGT	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCAATTGTGTCTC	alt_16_upstream	6	14	9	9	13	5	21	8	18	5
AGCGTCGGGCCTAGCA	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAGGGTAGCCGTC	alt_16_upstream	23	57	35	17	37	17	32	17	27	18
GGAGATGCGAAACCAT	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCTAGAAGTTTAG	alt_16_upstream	87	147	103	86	148	73	136	70	121	91
TCTGACCTCGTTACTT	alt_16_upstream	22	38	27	18	43	26	51	23	44	14
TCAGCCGCCTTCGTCT	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
TAATCTCTCTGTTCGT	alt_16_upstream	6	13	15	15	17	9	21	9	19	7
AGATCACATAATATGC	alt_16_upstream	36	71	48	25	69	27	93	29	60	33
AAATAATGTAGAAATC	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCATCTTCTTAGA	alt_16_upstream	51	88	85	56	105	50	114	61	114	55
CCTTTAACACTGCGCT	alt_16_upstream	1	12	5	2	9	7	9	2	12	6
CCCCCTATTACGTTTC	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
CTCACTTACAACCCCT	alt_16_upstream	14	24	28	22	51	13	47	13	51	10
GTGCTCCCCAGAACCG	alt_16_upstream	9	12	3	3	16	7	15	3	15	7
GAATCTTATCTTTATC	alt_16_upstream	24	33	27	16	30	17	35	14	33	16
TTGTGTTTCAATGTAG	alt_16_upstream	12	27	13	11	20	14	22	9	20	3
TCTTGCAAACCTGTCA	alt_16_upstream	10	15	12	6	13	17	25	5	25	13
GTGGATACCCAGCGCA	alt_16_upstream	5	13	13	5	20	13	17	3	13	7
GGAGCCGGAAGAGAGT	alt_16_upstream	108	146	103	90	169	96	150	86	145	80
TGTCATGTAATTGGAA	ref_16_upstream	76	143	93	99	144	89	125	58	131	74
GTGTCGACTCGGACTT	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
GCCGAAGAAGTTAATC	alt_16_upstream	6	10	4	6	6	1	20	7	10	7
ATCCCACTTTTGATTT	alt_16_upstream	26	63	33	24	60	24	49	28	51	19
GCGCAAATTATGCCGT	alt_16_upstream	13	23	24	9	29	13	24	9	32	17
TTGCATACTGCACCAC	alt_16_upstream	25	34	25	17	25	16	45	27	42	11
ACGGTCCACGCCATTT	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGCAGGTGCTAGT	alt_16_upstream	47	98	50	46	86	41	107	51	114	34
AGTTCTCGTGCGACTT	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
TTATGTTTTGATAGGG	alt_16_upstream	1	0	1	0	0	0	1	1	0	0
CGACTTTACGGACTTC	alt_16_upstream	45	52	37	29	48	40	45	34	61	30
ATTTGCCTTACCGAGC	alt_16_upstream	28	47	37	18	39	23	52	27	51	24
GTCCCTATAATGCTCG	alt_16_upstream	13	32	13	22	35	18	35	26	34	19
ATTTGGTGAGGTGTCC	alt_16_upstream	27	31	18	9	25	17	35	12	26	27
AAGATGTCGCGCTTAT	alt_16_upstream	20	40	33	18	29	22	40	23	30	24
TTATAACCAACTACCC	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTGAAAATTAGTG	alt_16_upstream	1	4	2	2	4	4	6	1	6	4
TCTTCTAATTGTTCAA	alt_16_upstream	34	55	37	17	51	21	38	17	34	29
GTGCTGTACCTTCTTC	alt_16_upstream	14	39	18	15	37	20	25	16	38	20
TATCTCCGTACTGCAC	alt_16_upstream	12	17	12	11	29	13	23	8	24	6
GATTACCTGTCTCCTC	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGTTCCCGTATCC	alt_16_upstream	162	231	211	134	268	164	281	154	271	185
TCCCATGCACGACTTA	alt_16_upstream	1	7	2	1	6	0	2	0	3	1
TCTTAGTACTGGGGCA	alt_16_upstream	32	69	48	35	59	44	75	28	69	31
TCTTGCAGCACTGGAC	alt_16_upstream	7	9	4	10	11	7	23	17	17	6
GATGACTGTATCACGG	alt_16_upstream	91	172	121	72	153	93	151	109	171	71
TTTCATGTTCATTTCT	alt_16_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTAAGGATCCTTA	alt_16_upstream	1	8	4	5	6	5	8	3	7	1
GATCATTGATTGGATG	alt_16_upstream	4	6	1	1	5	5	5	2	10	3
TTGGCGATTTTGATCG	alt_16_upstream	6	12	8	4	13	5	15	4	14	5
GGTCGTTTTTCCAAGT	alt_16_upstream	4	14	10	7	10	9	17	13	14	12
GACAGTGACCCCCAGT	alt_16_upstream	7	14	4	8	12	6	12	6	11	7
TCTGTGCCGGTTGATC	alt_16_upstream	78	117	94	65	133	73	129	67	125	75
GTGGTGCTGTTGAACT	ref_4079_RC	26	19	27	28	9	32	5	29	22	24
GATCACTGTTCAGTAG	ref_4079_RC	88	39	112	87	48	88	39	81	62	81
TTCGTTCGAAAAGGGG	ref_4079_RC	126	51	156	129	56	131	87	136	57	89
TGGCAAATTACAGCCC	ref_4079_RC	29	16	49	34	9	25	12	46	16	33
ATGCTTCCGCCTCGTC	ref_4079_RC	207	93	259	213	84	226	105	186	88	183
ACATACCATAGACACC	ref_4079_RC	62	38	75	77	37	48	26	54	27	53
GTGCCTGGATCATCTG	ref_4079_RC	44	26	67	51	26	49	39	35	36	52
TTGCGCGCACTTCATA	ref_4079_RC	46	22	58	56	23	64	33	60	34	34
CGTATTGTGTTTGTTG	ref_4079_RC	38	21	54	38	18	32	16	32	24	21
ACTATAACGCTTGGTG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TCGTTATAAGAATATT	ref_4079_RC	104	62	121	134	45	103	57	107	51	112
AGTGGGCTACACTAGG	ref_4079_RC	1	1	1	6	0	2	1	3	2	5
GTCAGAAGTGTGCGCG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TGCATTTTTCGTACTG	ref_4079_RC	21	9	21	19	8	15	13	19	23	22
GATCAGAGACATTTTT	ref_4079_RC	255	106	301	251	122	244	110	265	102	231
CTCGCTTTTCACGTCG	ref_4079_RC	21	8	20	16	16	14	6	12	7	20
TTTATCGGTTGGATTT	ref_4079_RC	15	10	27	30	6	20	13	19	7	19
ACGACTAATAACACAT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TTAGTAGTGCTTGATA	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
AAGACAGGTGCCAACT	ref_4079_RC	126	60	160	130	66	105	78	121	60	109
AGCTCTCGGTGTTTCT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
CACGGCATTTAACGTT	ref_4079_RC	90	44	95	100	37	71	47	79	33	64
CTTGTAGTTAATTCCC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
AACCCAGCTAGAATGT	ref_4079_RC	290	146	291	298	154	227	104	266	126	218
GTGCTCGAGCAGCGAG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TTGGCTCCTTCCTTTT	ref_4079_RC	3	2	3	4	1	4	2	2	2	1
TTTCATTGCGTGAAGG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
ACCCTCCCACTCCCGC	ref_4079_RC	100	41	98	106	50	86	52	110	52	70
ACTCGGTAGTTACTTC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
CTAGTAAGGGCTGTCC	ref_4079_RC	187	74	184	195	83	135	80	144	115	131
TCTCAAACCTCAATGT	ref_4079_RC	10	3	15	8	8	5	7	4	10	5
GAGACGCGCTATAGGT	ref_4079_RC	328	137	407	332	148	276	155	291	129	304
TTACGTTATATACTTC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TGTCATTTGGCTGATG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TTACTCCGCTGGCCAC	ref_4079_RC	122	97	164	115	95	118	79	112	90	111
TTCTATAATCTCAGTT	ref_4079_RC	5	1	4	6	6	6	2	8	2	1
GGTTTAGTGGGTTGGT	ref_4079_RC	27	15	27	19	12	26	19	16	13	25
TTGGGATGCATGTTCA	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
CGGGAGATGCCAGAGG	ref_4079_RC	66	24	72	51	26	50	26	59	22	49
TCGACATCCCGGAAAA	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
GACATTAATTCCCATC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
CGGGCGTGTTGTATTT	ref_4079_RC	145	85	208	145	71	155	73	149	73	119
TCAGTGCCGGCTTGCC	ref_4079_RC	219	94	283	225	114	186	86	222	110	191
AATCATGGCGAGCTCA	ref_4079_RC	56	16	64	83	34	46	24	53	27	52
CGTGATTTTGTTGGGT	ref_4079_RC	49	30	54	60	40	55	31	56	28	46
ACTTAGACTCTGTTGC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TGCGCGTGAAGGCCGA	ref_4079_RC	77	48	107	92	42	85	56	74	44	95
GCGGTATACCGTCATT	ref_4079_RC	52	23	73	64	17	63	27	56	26	45
GCTCTCTTATTCGGAT	ref_4079_RC	80	39	107	73	44	97	32	65	59	65
TGGCGTCGTCCGACTC	ref_4079_RC	36	13	24	24	9	34	8	17	5	22
GACCTATGATAGATTA	ref_4079_RC	121	55	106	98	30	98	56	81	59	89
TTTGATTAGTGTTGAA	ref_4079_RC	35	23	38	34	12	35	20	26	16	27
CTTTGTAATGTCATAT	ref_4079_RC	58	33	58	53	23	52	12	40	24	43
ACCTCCTGGAATCACG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
CTCATCGCTGTCATCT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTATGCTGTGGC	ref_4079_RC	126	60	177	163	61	133	59	151	78	136
ATGCTGATCGCTTGAC	ref_4079_RC	26	12	20	29	12	29	13	33	10	27
GCGTTAGTCACGCTTT	ref_4079_RC	333	167	432	385	138	364	173	328	151	321
TTATAAATACGCCGTG	ref_4079_RC	18	9	25	23	19	15	17	18	8	26
CGATGGAATCCCATTC	ref_4079_RC	47	16	51	43	44	38	43	51	23	35
GTCTCGCAATCCTAGG	ref_4079_RC	103	39	144	101	53	83	56	84	61	103
GCGGCACGTTATTTCC	ref_4079_RC	68	27	106	68	33	64	27	71	42	65
TCCCCGCGATCGTTTC	ref_4079_RC	9	75	5	9	82	7	101	10	85	7
CTGTCATCATGTATCA	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TTGGATTCCTAGGCGT	ref_4079_RC	1	1	4	0	1	5	2	2	2	3
ACACGGTTATAGCGTT	ref_4079_RC	32	11	30	26	14	26	22	27	9	22
TTCTTACTAGATCAGT	ref_4079_RC	101	51	100	102	51	93	58	93	48	77
AAGTTCACGTTTGAAA	ref_4079_RC	87	31	103	88	44	74	53	71	40	70
TGTTACGTCCATGTTT	ref_4079_RC	106	40	118	105	46	91	39	90	45	97
GCCCTACCAGATTAGT	ref_4079_RC	29	25	45	28	29	31	30	25	37	24
TCCTAGGAGTTTTTCG	ref_4079_RC	20	11	23	17	13	16	10	20	7	16
CGGTACGTCGATTGTC	ref_4079_RC	96	36	103	86	46	67	62	76	48	89
CACATGTCCCTCAAAT	ref_4079_RC	15	20	23	16	18	17	12	14	11	8
TACGGGATGGAATATT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
CTGTGTACCTGTTGTT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
AATGGTGTGTTATATT	ref_4079_RC	28	12	24	34	10	36	14	34	14	20
CTCAAAGGATCCTTGG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TAAGGTTACTGCCGTA	ref_4079_RC	49	33	61	57	34	50	30	60	17	35
AAGATCCGTGTTTCAG	ref_4079_RC	60	22	62	78	22	57	32	55	24	49
GCTCCTACTCCATATC	ref_4079_RC	33	14	42	46	16	26	13	21	11	30
CCTTCAGATGCCCTAC	ref_4079_RC	63	25	77	68	38	58	29	68	20	57
GGTTTCGAGCTTTTGG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TTGCCGTTACGTTCGT	ref_4079_RC	205	94	201	194	94	170	103	177	109	170
GGGCTTTCCCTGAGGA	ref_4079_RC	143	82	203	194	62	155	85	134	90	169
CTGTAACGCTGCGGGT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TATCCATGTTTCGTAC	ref_4079_RC	67	42	87	68	41	59	47	69	47	56
TACTTAATAAAATTTC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TACCGACGTTCTCGTG	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
GGGCTATGGCTAGCCC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
ACGCTACCCAGCATGA	ref_4079_RC	69	43	95	67	48	74	51	75	51	49
CTTCCGACGGATTCGT	ref_4079_RC	88	40	68	72	48	65	58	74	59	70
CACTCCGACACGTTGT	ref_4079_RC	23	40	19	31	54	40	41	21	41	16
ATTGTAGGTGCGTGAA	ref_4079_RC	231	121	264	245	123	241	112	196	103	179
TTGCTTGTTGAAGCTG	ref_4079_RC	94	35	142	149	60	126	46	111	66	95
AAGGAGTATGATATCC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TGCTGATAGGCATTTT	ref_4079_RC	35	20	41	34	14	46	22	45	15	46
AGTTCCGTCTTATCCG	ref_4079_RC	41	18	52	57	20	43	33	46	28	37
TTGTTAGGGTATCGAG	ref_4079_RC	120	48	141	131	44	124	70	128	68	114
CCGGGTTTAGCTCCAC	ref_4079_RC	64	30	78	65	24	59	28	78	21	57
AGCTGACGAACTGAAC	ref_4079_RC	36	17	39	33	14	44	16	34	15	30
CGTGGCCAATGTTTGC	ref_4079_RC	5	35	13	8	61	16	73	17	75	10
AGTCAAAAATATCGTC	ref_4079_RC	18	11	41	24	19	22	27	27	18	20
ATGCACATTGTTGTAC	ref_4079_RC	65	51	63	72	38	56	45	50	49	45
TGCGTAAAGTGCTTAT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TGATCTGGCTACAGTG	ref_4079_RC	44	22	47	52	24	38	20	27	17	44
CCTTCGGGACGGCGCC	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TTGTAGATTTCCCCTA	ref_4079_RC	29	21	39	33	15	46	19	37	15	34
CCTGGGTGCTTCAGTA	ref_4079_RC	11	9	20	16	7	8	8	11	6	17
GATATGTAAACTTATC	ref_4079_RC	63	26	67	99	30	62	25	51	33	60
CCATCGTGCGTCCATA	ref_4079_RC	6	2	4	3	5	13	5	8	1	2
TCTAGCCAATATGTAA	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TAAGGGGGTTCGCTTG	ref_4079_RC	9	2	8	8	3	7	3	4	2	5
ACTGGTTTGGTATGCA	ref_4079_RC	73	46	100	107	33	73	33	70	59	69
AGCGTCTATGCGTCCA	ref_4079_RC	143	85	162	180	88	182	82	141	99	138
GTTGGTCGCGGTTCTT	ref_4079_RC	6	4	5	10	1	8	4	1	3	2
GGGGCGCCGTTTTCTT	ref_4079_RC	0	0	0	0	0	0	0	0	0	0
TTCGAGTCTTCATCCT	alt_4037_upstream	8	14	5	9	13	7	10	5	14	11
CTCACGGCGTTGAAGT	alt_4037_upstream	3	2	3	3	2	3	2	1	4	5
GCTGCCAGTGTTCGCG	alt_4037_upstream	5	18	16	9	17	11	15	9	23	10
GACCGACTGTCATGTT	alt_4037_upstream	12	32	20	24	26	15	27	19	26	10
GGTGGCGCAGGACGTC	alt_4037_upstream	35	41	52	44	48	35	63	30	46	40
GATGCTGCTTCGAGAC	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
ACAGCTTTTGCGGTAT	alt_4037_upstream	3	6	7	3	10	5	9	4	8	6
GCGGGATTTTCCAGTG	alt_4037_upstream	1	1	1	2	0	3	1	2	1	1
TGGGCTACTAGGGTTT	alt_4037_upstream	111	111	106	130	165	93	156	82	138	61
GTATTGCCGCAGTGGT	alt_4037_upstream	27	20	23	16	37	22	34	12	32	16
GCTGGATCCATGCCAG	alt_4037_upstream	14	22	11	16	10	11	14	10	18	10
CTCCAAAATTTTTGTT	alt_4037_upstream	20	45	42	34	54	32	44	31	47	45
TTTCCTGCCCTGGTGT	alt_4037_upstream	43	89	59	54	82	36	78	41	78	46
CCCTCTAGACAAGATG	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
ACTTAGGGTGACAAGG	alt_4037_upstream	17	29	19	22	17	19	30	24	30	17
TGTCTTATGTGTCGCG	alt_4037_upstream	18	17	11	11	15	12	19	12	17	15
CGGTTGGTGCCTTCGA	alt_4037_upstream	23	50	21	21	57	16	53	13	47	15
CTTAGTGTATCGTAAT	alt_4037_upstream	26	20	21	29	29	31	38	23	26	18
TTGGTCCCTCTTGGCT	alt_4037_upstream	198	233	201	191	258	182	268	217	245	176
GATTGTTAGTATCTCA	alt_4037_upstream	75	108	85	90	117	82	137	49	143	59
TCTCACGGCAAGCTTT	alt_4037_upstream	210	265	257	227	289	201	287	160	338	165
TAGTGTGAAACATATG	alt_4037_upstream	30	60	31	34	59	45	59	41	47	28
CTTTCATGTTATGTGG	alt_4037_upstream	33	45	42	22	36	49	44	35	59	32
GATAGCGTTATCGCTA	alt_4037_upstream	21	31	35	9	27	19	24	15	24	17
ATCTTCGCAAGCTACA	alt_4037_upstream	34	56	23	24	48	27	49	22	52	25
CGGTGTCTTGTTCACG	alt_4037_upstream	25	29	30	23	38	27	52	23	51	25
GGTGCGGAATGAGGTC	alt_4037_upstream	6	10	10	4	12	7	10	5	12	6
CACGTCTCTGTGTAAC	alt_4037_upstream	128	249	138	135	206	133	222	144	220	117
CAAGTCATAAACATCA	alt_4037_upstream	31	49	33	26	54	35	48	32	66	26
CCTGTTCGACGTGGAT	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGCTACAGCGGAT	alt_4037_upstream	0	1	2	1	1	1	7	8	0	0
TAATCCTTTTCCTCGG	alt_4037_upstream	15	29	24	16	33	20	29	27	24	25
GCCCATCACTTAACTT	alt_4037_upstream	12	22	19	21	38	13	26	17	26	11
TGCCTGTGGCACGGCT	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
GAGATGGATTACCTGA	alt_4037_upstream	2	9	4	5	25	6	21	5	20	8
TACTTTTTTACCAGTT	alt_4037_upstream	144	242	155	133	155	152	251	122	232	121
TGGCTGGAGTGGGGCA	alt_4037_upstream	56	72	67	51	66	42	89	62	74	39
CCTATTATTAAATTAG	alt_4037_upstream	152	215	178	130	245	138	248	131	230	130
GATATCGGGGTTCGGC	alt_4037_upstream	19	37	28	27	39	18	33	29	41	21
ACCTGCAAACTAGACG	alt_4037_upstream	18	31	27	22	31	31	24	13	38	26
GTTAGCCCGCCTTGTA	alt_4037_upstream	10	23	16	10	27	10	12	9	15	14
CCCCAAATTTTCTTGA	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCGAGCGCAAACA	alt_4037_upstream	38	67	32	33	45	28	49	41	64	20
GTCCAGCAGTGTGGAA	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTTGTGCACCCGC	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTAATGATACGCA	alt_4037_upstream	8	19	6	10	9	7	17	2	15	3
CCGCGCACCGATGGGA	alt_4037_upstream	17	13	17	11	18	8	15	12	18	17
GCTGGTCGCGACGGCC	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
ATACAACTTGCAGCCT	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAGTATTAATTCC	alt_4037_upstream	15	26	25	15	13	13	19	16	23	8
TGTTACGGCCGAAAAC	ref_4037_upstream	26	27	35	20	40	28	45	27	35	21
CCGCACACAAGAATCC	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TGTATTAGATGATTCA	alt_4037_upstream	34	55	48	44	65	42	65	49	59	32
ACTACTAGGAACTGCT	alt_4037_upstream	1	4	3	0	5	3	1	0	2	0
ATAGAATCCAAAAGCA	alt_4037_upstream	61	99	74	72	118	72	115	67	105	78
ACTGTTGTCTCCATTG	alt_4037_upstream	13	25	40	23	40	22	31	21	30	15
TTATAGGTCCCTTTCT	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
AAAAAAGCTTGAACCG	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCCTTTTGTAGC	alt_4037_upstream	15	17	15	25	23	23	36	21	31	22
AACATGAAGGGCTTTC	alt_4037_upstream	22	23	19	15	30	18	31	22	32	17
AGCCCAGGTCCAGCGC	alt_4037_upstream	36	51	34	33	47	26	64	35	62	30
CCCCCGATCTGTAGCT	alt_4037_upstream	3	26	3	1	23	1	27	4	30	2
TGCCTTGTTGTAGGTC	alt_4037_upstream	49	82	60	47	75	46	84	47	89	41
CAGGAAGTCGGGAAGA	alt_4037_upstream	20	28	25	17	18	24	26	16	34	13
GATTGTTGGTCCTCGG	alt_4037_upstream	4	6	10	9	2	5	11	5	10	4
CGGACGACCCGCCAAC	alt_4037_upstream	18	119	23	28	154	18	105	20	129	19
TCGCTTGTGCGCCCGC	alt_4037_upstream	57	149	82	53	155	46	142	53	149	60
GTCGTCTCTTCTGGTC	alt_4037_upstream	5	9	7	6	15	4	8	3	11	5
CTACAGCCGCGCGTCT	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGCTTACGGGGCA	alt_4037_upstream	5	5	5	8	2	5	8	5	7	7
TCTCTTTTTGCGTCAG	alt_4037_upstream	22	20	24	19	22	11	31	10	41	15
TTATTTCAACGGGGGC	alt_4037_upstream	32	26	35	19	56	31	39	23	36	30
TAAATGAGTATACCCC	alt_4037_upstream	3	1	2	1	4	3	4	0	2	1
ATCACACGTTCTATAC	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TACAGTGCTGATTGCT	alt_4037_upstream	31	34	40	26	32	33	53	29	42	32
CTACCAACACATCGGT	alt_4037_upstream	130	204	142	125	174	128	191	116	222	138
AGAAAACTACAGACCA	alt_4037_upstream	11	7	8	8	13	8	15	11	18	5
TGCACCTGTGCCAAGT	ref_4037_upstream	215	410	294	239	385	206	399	224	414	207
TCCAGAATAAACGCCA	alt_4037_upstream	18	33	32	18	27	19	36	25	39	20
TACTAACATCTTCCGG	alt_4037_upstream	7	6	14	5	10	10	15	6	14	8
TTTTCGCCTATCTATT	alt_4037_upstream	11	44	27	28	45	27	35	16	42	16
CAAATCTTTAGCATGG	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
GTAATGGCCGCGCTGA	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
CTCAATCATTCTAAAC	alt_4037_upstream	41	61	46	33	43	37	61	34	55	34
CTATGCTAAGCCGTTT	alt_4037_upstream	99	117	131	99	128	105	147	106	169	97
TCGGTCCTGGTTTGGA	alt_4037_upstream	17	28	19	22	27	23	19	19	16	22
CTTAACACAGGGGAGG	alt_4037_upstream	8	14	6	9	11	14	14	16	16	8
CGGAACCTCTGGTGCA	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGTATTGTATTTT	alt_4037_upstream	221	265	268	237	268	257	314	234	297	213
GCCCGGGGTGTGACTG	alt_4037_upstream	13	11	13	18	20	14	29	12	15	8
ACGTCCGGCTCGCACT	alt_4037_upstream	273	341	283	233	318	242	345	223	323	194
GCCGTGCCACCTTCCG	alt_4037_upstream	22	53	33	23	72	26	55	27	73	20
AGGTATAACGTATGGA	alt_4037_upstream	21	40	34	30	30	21	32	17	42	36
CCTTAACGACCTCCAA	alt_4037_upstream	15	78	32	22	81	24	79	21	80	9
GCTAGGATCCGAGAGG	alt_4037_upstream	7	19	16	8	11	16	13	15	14	8
GGGAGAGTAGTGCATG	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TATCTTTAAGCGCCCA	alt_4037_upstream	72	95	82	74	115	67	99	76	105	69
AATCTACAGTGTCCAT	alt_4037_upstream	16	20	21	20	27	16	24	12	30	16
CATGCGGTAGACCGGT	alt_4037_upstream	10	54	7	8	38	2	40	6	35	6
GGTGATTCGAGGCAAG	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGCATATTAGATG	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
GCTACCTGCACCTTAG	alt_4037_upstream	17	28	19	22	27	17	25	20	28	14
TCCCTTCATTAAATAG	alt_4037_upstream	6	9	17	11	8	6	10	11	13	10
ATAGTTAGTATATTGA	alt_4037_upstream	18	31	27	24	26	17	15	11	39	20
TCAAGGGTTAAAGATC	alt_4037_upstream	13	12	11	12	18	10	12	7	11	7
GTCACCACTGTGAAAT	alt_4037_upstream	19	37	20	14	27	19	33	15	36	14
TACTTTGTTTTATCAT	alt_4037_upstream	18	13	19	15	26	16	11	12	16	14
GGTTGATAAGTTCTTC	alt_4037_upstream	132	142	152	118	142	114	169	108	162	87
TTTCCTTCTCCTGATA	alt_4037_upstream	45	51	58	33	77	37	59	40	73	36
GCGTGTAACTCGTTCG	alt_4037_upstream	23	23	19	10	18	12	23	13	18	17
CTTGGATATCACATCA	alt_4037_upstream	13	22	12	8	14	11	9	13	12	7
TCTAGGGTAAACGCGC	alt_4037_upstream	3	6	4	5	2	3	14	4	10	2
ACGACCTGTTTGTAAC	alt_4037_upstream	142	174	171	168	192	150	200	135	229	136
TCGCTCACGTGAGAGT	alt_4037_upstream	6	4	3	3	5	3	5	2	1	4
CGCCCAATCCTGATCG	alt_4037_upstream	16	34	31	32	40	23	33	18	43	12
TGTTAGCTAGGGCTTT	alt_4037_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTATCCTTCATAT	alt_4037_upstream	14	28	16	11	31	15	39	6	23	14
CGTATTTATAAAACGG	alt_4037_upstream	50	68	75	45	67	33	63	46	64	50
GGTTGTCCCGGCGCAA	alt_4037_upstream	47	76	75	53	96	53	83	44	88	52
TTGGGTGATGCCCATT	alt_4037_upstream	6	15	7	6	12	1	13	6	18	8
CTACAGGCCGGCCGGC	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGTACATCCTTCT	alt_4201_upstream	1	3	0	0	0	1	2	0	1	3
GCCAAACAATAGAATA	alt_4201_upstream	45	97	62	47	84	42	101	41	94	39
CGTAATCAAATATGGA	alt_4201_upstream	53	49	67	38	62	54	68	43	60	44
CAAAATTCTAATTGAT	alt_4201_upstream	13	6	5	12	6	3	7	7	14	3
CCTCTTTCCCATAATG	alt_4201_upstream	60	96	80	46	134	70	158	44	153	61
AAATTGTAATAATCTA	alt_4201_upstream	3	1	3	2	0	1	2	2	1	1
TATGACAAGAGGTAAA	alt_4201_upstream	78	85	108	48	102	73	96	50	97	56
CATCTTCTGTTACGTT	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
AACGAGGACTCCCGCG	alt_4201_upstream	313	375	381	348	416	302	441	299	463	281
TGTTCGACCTACTGGT	alt_4201_upstream	6	9	9	4	13	10	7	12	13	5
TGGTTGGCTATCCTTA	alt_4201_upstream	2	2	0	1	2	5	2	4	1	0
CTTCCATTGCTGAGGT	alt_4201_upstream	32	43	34	24	37	27	45	25	69	25
GGTCTCACGTCCGTGT	alt_4201_upstream	4	13	8	3	20	5	19	4	23	4
ATAATTGAGGACTGGC	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCTTGTTTCGCG	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCATATCGAAACA	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
GCGACGAAATTATTTA	alt_4201_upstream	1	4	4	2	4	4	7	3	5	4
TTCACATGCGACGATA	alt_4201_upstream	15	18	17	9	16	11	27	16	20	20
CGTTTTTATATTCCAC	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
ACGATCGGTAGTTCGG	alt_4201_upstream	26	27	37	37	42	23	43	30	40	19
ATGATTGGTGCTAGGG	alt_4201_upstream	5	18	10	10	16	10	19	14	13	6
TGTCAACTCGTAATTC	alt_4201_upstream	12	23	19	10	22	11	25	13	24	6
CAACTTACTGGGGTCA	alt_4201_upstream	41	62	58	30	57	19	57	41	74	21
TACGAGTTAGGGGGAC	alt_4201_upstream	107	117	103	93	134	98	109	69	129	80
GCATCTGGGTACATCT	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
CATCAATTATATACTA	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTCAAAATCGGAT	alt_4201_upstream	37	73	69	48	85	42	63	41	97	41
CCCGGTTATGCCGTAG	alt_4201_upstream	24	77	37	25	101	33	118	31	100	22
TTCCACCATCTGGGGT	ref_4201_upstream	15	57	20	12	53	14	55	25	59	17
TGAGTGGTTTCGCGAC	alt_4201_upstream	7	15	18	15	14	18	24	4	24	10
ATACACAGCTGGTAAC	alt_4201_upstream	63	71	79	58	77	61	82	65	76	51
AATGAGCGCCCTCCCA	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGCTATTTCGAGT	alt_4201_upstream	5	7	12	10	10	6	15	4	12	4
TTTAGAGTATCCATTA	alt_4201_upstream	9	34	6	11	21	6	25	11	21	14
GCTGTTGCGAGTGTCA	alt_4201_upstream	43	62	44	36	56	44	64	31	59	50
GTCAAATATGTGAACC	alt_4201_upstream	28	27	24	14	36	16	33	22	41	13
GGTATCAAGTGGAGTT	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTAGGAGAGTTGC	alt_4201_upstream	8	13	18	17	11	11	22	4	19	5
TGTCCATGAATGCGCT	alt_4201_upstream	29	59	45	33	42	37	55	30	68	40
GGTTATGATTGTTCCT	alt_4201_upstream	6	9	20	3	7	8	15	10	14	4
GTCCAGGGACAAGTCT	alt_4201_upstream	86	138	119	115	156	87	129	71	188	94
CATCATTTGCCGATGT	alt_4201_upstream	15	29	41	24	39	17	32	21	38	23
CCGTGGTCGATGATGT	alt_4201_upstream	26	22	15	18	12	24	14	11	30	17
TTCCGTACTCGGTAGC	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTGTCGTACAATC	alt_4201_upstream	15	35	16	18	42	16	35	13	33	8
TCGATAAACTCGTCGC	alt_4201_upstream	22	33	32	18	33	25	28	32	38	25
CGGACGACCAGTTATG	alt_4201_upstream	52	59	60	43	51	53	59	44	61	41
CATTCAATGTGATTTG	alt_4201_upstream	57	80	68	57	73	53	86	51	77	49
CTCTTTTATGGCTTCG	alt_4201_upstream	18	39	17	21	28	13	22	25	23	17
GTTGTTGCAACAACGT	alt_4201_upstream	47	78	48	54	62	34	78	23	72	38
ATTCGTTTAATCCTGA	alt_4201_upstream	23	28	23	25	20	25	36	27	32	19
TTAGACAGCCCTCGCA	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
TATAATATACCAATTT	alt_4201_upstream	18	23	13	14	20	18	12	15	24	5
CGAAACTCGGGTAATA	alt_4201_upstream	8	8	8	4	8	10	6	3	12	3
ATGCTGCCGGTGACAC	alt_4201_upstream	20	36	22	14	35	23	27	24	36	12
CTAGAAGTCACCTATC	alt_4201_upstream	0	3	0	1	15	0	5	5	7	4
GATATTGCCCCATCTT	alt_4201_upstream	34	55	48	36	45	29	57	38	56	35
TCATTGGAATCACTGC	alt_4201_upstream	8	11	13	12	12	7	15	8	10	7
CGGCTGCATTTATAGG	alt_4201_upstream	15	29	22	22	42	17	45	16	38	15
TAGTCAGGGTGCCGGG	alt_4201_upstream	34	68	54	40	55	39	79	54	64	47
GTACAAGCATTCGCGC	alt_4201_upstream	3	9	9	3	8	4	6	9	8	10
GATATGTTTACAGCAG	alt_4201_upstream	38	48	46	32	56	56	52	34	48	23
AAATTTCTATTACGAT	alt_4201_upstream	0	0	0	0	0	0	0	0	0	0
TCATCGGCCGAAGTTC	ref_4201_upstream	21	15	22	10	30	3	20	10	31	20
TATAACCAACTTAGGG	alt_4201_upstream	51	58	59	50	66	37	56	33	93	48
GCCCTATTTCGCTTCT	alt_5958_new	22	13	19	21	22	22	20	11	24	21
CTCTCTTGGGATATGG	alt_5958_new	13	19	13	10	7	11	19	4	14	4
AAAAACTCTCCCGTAA	alt_5958_new	1	4	3	1	2	3	6	1	0	0
TTTCAGCGACTAAACC	alt_5958_new	77	73	70	64	73	62	73	66	103	77
TCCTGGGTATTGCATA	alt_5958_new	48	79	76	49	72	49	77	55	85	50
TTGCGGCAGCTCGTCA	alt_5958_new	0	0	0	0	0	0	0	0	0	0
CTATCATTCACGCAAT	alt_5958_new	15	13	16	12	14	8	10	10	25	12
GTCGAGCCTTTTAGCT	ref_5958_new	185	267	210	200	238	170	230	178	276	168
CTGTGGTCCCATCCTG	alt_5958_new	61	73	65	45	82	40	74	40	99	50
CGCTTCGTAGGCTGCA	alt_5958_new	51	62	73	51	74	52	65	42	80	56
TATGGCGACCCACGCT	ref_5958_new	14	14	16	17	21	13	17	16	6	7
TTTGACCATTCGTAAA	alt_5958_new	20	28	20	24	36	29	40	20	24	32
CTGTCCACCATGTATT	alt_5958_new	1	2	5	3	9	6	8	0	6	5
TTACCGTCACTACTCA	alt_5958_new	14	15	18	14	28	11	20	9	21	8
ATGAGGGCCTGTCCGA	alt_5958_new	14	7	14	10	13	11	13	11	10	11
GTCCATGTCTTATTAG	alt_5958_new	5	7	4	3	5	11	18	4	10	6
AACGATTGTGGTGGAC	alt_5958_new	0	2	6	2	5	4	8	0	2	1
CTGTGACCAATCTAAT	alt_5958_new	0	0	0	0	0	0	0	0	0	0
GGCTTAAATTGTTTAC	alt_5958_new	8	12	11	20	7	6	14	8	11	13
GGCTGCACCCTGCTCT	alt_5958_new	56	74	60	59	77	45	89	37	66	50
AGGACTTTATGACTTT	alt_5958_new	0	0	0	0	0	0	0	0	0	0
TTTCCTACCTGCTGCC	alt_5958_new	4	6	5	3	7	5	6	2	9	1
AGTAGTCCTTATTTGA	alt_5958_new	57	97	80	66	102	63	97	49	102	60
GACAGAGTTCTGGGAG	alt_5958_new	0	0	0	0	0	0	0	0	0	0
AGTTGCGAGTCATACT	alt_5958_new	10	28	31	28	14	18	27	14	36	16
GCATGCTCAGAGTGTC	alt_5958_new	10	11	12	5	14	17	6	8	13	14
TAGAGGCGTGTACGCG	alt_5958_new	37	51	39	45	45	37	40	29	41	27
TCTGGGTTATTTTCTT	alt_5958_new	69	57	57	73	64	47	63	64	57	59
ACATCTTTTCCTCCGA	alt_5958_new	12	19	13	11	7	13	15	10	9	14
TGTCCGTCTCGCGTTA	alt_5958_new	57	63	68	46	65	45	58	36	71	41
ACCGAGTCTGGTTGCC	alt_5958_new	4	2	2	4	0	4	5	2	4	1
TCTAATTAAACCTTGC	ref_5958_new	124	108	112	125	123	92	134	98	138	99
TTCGTTATTTTATTCG	alt_5958_new	170	187	184	162	210	165	207	142	205	144
TCGGAGGGGCTTTATC	alt_5958_new	47	44	54	55	51	42	61	36	63	25
ACTTCTTTTAGATTTT	alt_5958_new	0	0	0	0	0	0	0	0	0	0
GAACGCTTGATTTCAT	alt_5958_new	8	13	7	9	7	12	11	6	6	8
CTAGTGTGTAAGGTGG	alt_5958_new	14	20	16	10	25	11	29	17	16	15
GCTTCAGCTCGGGTAT	ref_5958_new	11	16	19	11	24	11	24	12	11	15
TTCTCACGCGACATGC	alt_5958_new	0	0	0	0	0	0	0	0	0	0
CGTACGTCTGGCCATC	alt_5958_new	24	58	48	38	49	29	54	28	58	47
GTGGGAAGATTTTATA	alt_5958_new	42	57	74	49	72	36	64	44	78	40
TCTGTCTTTCTCTCGC	alt_5958_new	6	13	16	14	7	11	12	8	4	14
GTAAAGCTCCTATGAT	alt_5958_new	32	43	43	39	57	34	55	33	57	23
TTTCACTTTCGCTTTC	alt_5958_new	15	4	21	16	4	18	7	11	10	15
CCGAGCTGCGTGCATG	alt_5958_new	57	48	65	48	50	31	50	32	53	36
GTTTGAGTTAATTTGG	alt_5958_new	9	10	10	15	17	9	24	2	9	10
CATCCGGGAGTACGCC	alt_5958_new	30	45	44	31	41	23	46	27	38	31
TATATATCACATCTTG	alt_5958_new	35	39	38	37	38	30	42	27	46	28
CCGTGCTCCCCTGGGC	alt_5958_new	34	36	24	31	43	28	41	22	53	13
GACGATGTCTTCGAGC	alt_5958_new	33	39	54	36	28	51	53	40	43	28
ACCTATCCACTACGTA	ref_5707_new	6	40	8	10	42	13	32	8	42	8
ACGGGTTGTTGTACTC	ref_5707_new	97	160	91	95	170	88	171	79	180	73
TCTACGTCTCGACCCG	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CACGCTAAACCTTCTT	ref_5707_new	2	5	1	2	2	4	2	2	10	1
ATGGTCTGTATCATAG	ref_5707_new	11	11	13	8	15	9	11	7	21	14
AATTACCATATCATAC	ref_5707_new	11	15	15	3	10	10	21	12	27	10
ACATGCCACATCCTCT	ref_5707_new	14	54	30	12	54	20	55	19	58	29
GTTCCTCGCTTCGCCC	ref_5707_new	12	29	15	22	30	21	16	8	22	21
GATTCAGGCGTAAACG	ref_5707_new	15	17	16	20	22	16	17	5	28	4
ATTACCTTTATGAAGT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
ATCGCGCGGTGCGCCA	ref_5707_new	9	17	12	12	27	6	23	9	16	6
ATACGTGCGCCGTCTG	ref_5707_new	12	22	17	13	13	10	19	11	18	12
CCGGTGAGAGCCTACC	ref_5707_new	10	25	14	12	13	13	13	9	20	11
CGGGCAAGTCCGTGGG	ref_5707_new	232	384	268	206	387	243	391	213	388	213
TGGCTAAAGTTTGCGT	ref_5707_new	40	60	42	37	78	41	73	32	82	30
TGGCTTTCGGATACCC	ref_5707_new	23	30	22	25	28	22	41	20	32	23
ATCTGATAGTGTGTTC	ref_5707_new	12	25	9	8	19	9	26	5	30	12
GAGACAATCACATATC	ref_5707_new	3	3	5	1	7	2	7	1	5	7
CCCTGTGACGAGGCTT	ref_5707_new	22	32	33	30	31	30	38	21	42	39
GAATTGATCTCTCCGG	ref_5707_new	75	115	90	86	113	96	137	94	94	82
CTAAGGTTGTGAGGAA	ref_5707_new	5	9	9	7	10	4	15	4	10	8
TCTGTGCATTTGCCTC	ref_5707_new	6	9	2	6	11	2	11	3	6	6
TGTCCGGGAGAGTGGG	ref_5707_new	55	96	49	52	96	35	93	44	89	42
CCAAGAGTAGCTCGCC	ref_5707_new	5	15	7	6	14	4	12	6	11	2
ATTTTCCGTACTTATG	ref_5707_new	8	17	13	7	25	3	15	9	15	4
ATTTTCGCCTTCTAAA	ref_5707_new	10	24	17	18	18	8	24	8	26	9
CGCTCCCTAGTGCGGC	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CCCAGCCAAGTATTCT	ref_5707_new	15	18	10	14	24	11	24	17	15	10
TACCGCAGGCCCTGCC	ref_5707_new	15	23	14	17	18	11	22	11	34	12
CAACCTGTGAGAAGTG	ref_5707_new	20	42	25	23	60	12	50	13	45	16
CTTACGCTCACCGCGA	ref_5707_new	6	3	3	2	7	5	8	9	6	3
GAGCACTACTACTCTA	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CAGCCTCCTATTCCGG	ref_5707_new	8	10	2	5	8	2	7	7	9	3
GACCTCCTAGCCAAAC	ref_5707_new	5	8	7	4	15	6	14	7	19	12
TCGTCTGCTTATGCGC	ref_5707_new	14	23	15	14	18	17	22	6	21	14
CCGAAACGTATCTTGC	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CGTTCCTAATTGGTTA	ref_5707_new	28	65	43	29	56	38	70	23	74	31
AAGGGTTGTTGTACTC	ref_5707_new	0	0	0	0	0	0	0	0	0	0
TATTGGATTAGCCTCC	ref_5707_new	0	0	0	0	0	0	0	0	0	0
TTTGGCTAATATGCAC	ref_5707_new	29	60	40	29	63	35	55	30	60	33
GCCCTACGTGGTAGTG	ref_5707_new	1	5	3	2	6	2	4	2	5	1
CGCCCAGTAAGCCATG	ref_5707_new	72	80	85	43	82	76	109	37	107	54
TCTTGGGACTTTACCT	ref_5707_new	1	3	1	3	4	0	7	1	1	1
CTGGGCAAGTAGCCCG	ref_5707_new	58	139	69	51	114	63	109	49	122	52
TGCCCTCGCAATGGTT	ref_5707_new	136	233	156	145	233	148	251	98	264	134
TGTTAGACTTGTTTTG	ref_5707_new	7	15	12	4	13	9	7	8	14	8
TAGATTGGTCAGCGTT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
TATCCTGCGTATTCCC	ref_5707_new	10	27	16	13	20	10	31	6	23	18
TTTTACATCTATTGAA	ref_5707_new	0	0	0	0	0	0	0	0	0	0
AATGGTAATTGTTCAT	ref_5707_new	9	22	13	13	21	3	29	13	18	7
CTGGGGTCGATCTCCT	ref_5707_new	8	9	5	4	10	4	16	3	3	5
TGATGCTAGGCGCACT	ref_5707_new	0	2	5	6	3	2	2	1	4	4
CTGCTTGAGCTTACTC	ref_5707_new	4	13	12	17	22	3	21	7	17	10
TATGCCAAGGCCCAGC	ref_5707_new	12	25	16	17	22	12	31	15	29	9
AATCAAGAAACCATTT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
GTTTCTTCTCGTTTTT	ref_5707_new	1	2	1	0	3	0	1	0	3	1
GTGTGACCGTTGATTA	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CATGCCTTTGGAGATT	ref_5707_new	2	4	8	5	10	3	17	2	5	6
CCTTAGGGACCGTATG	ref_5707_new	0	4	1	2	3	4	8	4	0	3
TGTTTGTAAGTTACGT	ref_5707_new	9	11	6	6	23	11	24	6	13	8
GGTACCTGCTGAACAT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
AGTTAGGGATTAATTT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
TATTCTGGGTTTTGAT	ref_5707_new	2	7	3	4	4	6	8	3	6	5
GTAATGTACCATCCGC	ref_5707_new	35	56	38	36	65	28	47	31	94	41
ATACTTCCAGATTGGC	ref_5707_new	43	85	49	56	83	65	85	49	84	39
GTAGCCCACGGACCTT	ref_5707_new	9	20	12	6	11	16	13	7	18	7
TGCGGCCGCGAATCCC	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CTTGGTTTCAGTAGGT	ref_5707_new	14	21	11	17	28	11	17	7	24	11
TATTTTCAGTGTCGAA	ref_5707_new	0	0	0	0	0	0	0	0	0	0
AAGGCGTCTCTATACT	ref_5707_new	3	10	8	8	13	8	14	8	7	7
CCCTTTCCGTCTTTTA	ref_5707_new	81	173	91	100	190	75	171	88	177	68
GTGAGGATGGTCGGAC	ref_5707_new	0	0	0	0	0	0	0	0	0	0
TTAAGGCAGATCGGTT	ref_5707_new	2	7	2	0	3	6	7	0	1	6
TCCCTCGCGAAAAATG	ref_5707_new	0	0	0	0	0	0	0	0	0	0
ATTATTAGGCCTTTAT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CTGACTACGGTTCATT	ref_5707_new	26	43	21	22	43	17	58	29	51	23
TAGATTCTTTGCTCCT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
CAACATGAGCGGAATA	ref_5707_new	4	6	10	4	12	3	10	7	6	5
CTAAATGGCTCCGATG	ref_5707_new	20	42	35	25	60	22	43	25	49	22
CAACGACGTTGCCCCT	ref_5707_new	29	54	25	13	60	22	49	16	59	20
TGTCGGTACTGGTTCA	ref_5707_new	0	0	0	0	0	0	0	0	0	0
TTCAGTAATCCTCGTT	ref_5707_new	30	29	18	18	29	18	36	22	31	24
AGTTGTTGATACCCTC	ref_5707_new	24	66	35	35	52	27	72	29	74	24
GATGAGATCGAAGATA	ref_5707_new	46	85	52	56	84	60	78	37	86	56
TATATGTAAGGATCAA	ref_5707_new	20	56	26	26	49	24	37	33	51	19
GCCCTTTACGGCGGTT	ref_5707_new	29	46	39	27	49	27	46	27	49	24
TTATTCGCGGGCCGTT	ref_5707_new	42	61	40	38	63	29	82	44	71	29
CCGCCTGGGGTTTATT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
ACATTCGCTCATCGGT	ref_5707_new	6	13	19	12	15	7	10	7	18	2
TTAATATCTAGAACAG	ref_5707_new	0	0	0	0	0	0	0	0	0	0
GCTATTCATCCACGAT	ref_5707_new	26	67	43	40	68	41	65	36	74	34
GTTCCATTCTGTATCT	ref_5707_new	6	7	12	12	18	9	15	10	11	1
CTTGATACGTGTTTAG	ref_5707_new	3	7	3	4	8	3	8	5	13	3
CTTACCTGTCTTTGGG	ref_5707_new	13	139	13	13	128	11	162	13	137	6
CACCTCGACTCTCCTG	ref_5707_new	11	32	14	23	50	27	54	23	57	17
ATACTTACAGATTGGC	ref_5707_new	0	0	0	0	0	0	0	1	0	0
CTTTGGTAATTCTATG	ref_5707_new	25	47	26	30	33	23	46	19	43	22
ACACTTTCGTTCTTTG	ref_5707_new	27	35	29	15	42	19	42	14	44	25
CCAACGCGCAGCAATG	ref_5707_new	1	5	4	4	9	3	9	3	6	3
GGAATCGACTTACTCG	ref_5707_new	0	0	0	0	0	0	0	0	0	0
GTCAAAAAAGTTCGAT	ref_5707_new	12	27	17	15	30	21	33	10	27	14
AACATCAGTCATGGCA	ref_5707_new	42	47	35	30	63	32	43	18	63	22
TGGATAGAGTATAAAG	ref_5707_new	46	134	80	52	105	75	96	73	105	63
ACGGCTCACGGCGTTC	ref_5707_new	11	23	25	9	38	15	33	15	25	7
TGATACCCTACCCATC	ref_5707_new	16	29	15	13	27	8	33	18	33	13
CTGGTCCGGTTGGATG	ref_5707_new	31	59	40	35	59	29	63	45	62	26
CCTCCCTTCGATCGTT	ref_5707_new	5	20	4	2	11	6	12	2	9	3
GCGGTCTTTTGGTGAT	ref_5707_new	1	7	0	0	2	1	3	0	4	1
CTCGGCTTGGAATCAT	ref_5707_new	15	16	16	10	33	20	21	12	28	13
TACAATTATATGAGTC	ref_5707_new	1	4	9	1	6	4	4	4	9	4
TAGTGCTTCCAACCGT	ref_5707_new	22	34	22	20	43	16	42	25	48	19
CTGGGTACGGCCATCT	ref_5707_new	0	0	0	0	0	0	0	0	0	0
AACCAACTGGCCATCC	ref_5707_new	11	19	7	12	14	8	11	7	24	6
TGTGGTGTAATTTCGT	ref_5707_new	3	11	7	5	9	3	13	2	10	9
CGTGTTGGCCCATGTG	ref_5707_new	4	3	6	5	2	2	2	0	3	2
GTGTAGGGTGAAGACG	ref_5707_new	35	49	46	26	58	34	48	39	68	30
AAGCTATTTCAGGCTC	ref_5707_new	17	41	20	15	34	22	39	17	48	13
ACAGTGGTTGGTACTT	ref_5707_new	21	44	24	18	34	9	29	8	39	12
CCTATCATAATGTTCA	ref_5707_new	0	0	0	0	0	0	0	0	0	0
TTTGCTGTAACATACA	ref_5707_new	47	46	40	40	66	31	86	34	79	48
TCGTAAAGAGGCATAA	ref_5707_new	47	71	42	45	67	41	92	44	73	37
TGTGATGCCGTTGTCG	ref_5707_new	36	52	34	30	38	22	39	32	52	12
AGGGTTCTTATTATGT	ref_5707_new	31	67	33	16	58	30	71	20	66	27
CCAGCGCGCAAGTTGC	ref_5707_new	8	55	8	9	60	11	64	11	73	8
CTAACCGATGGAGATT	ref_5707_new	23	38	32	29	69	25	47	30	66	28
CCGATTCTTAACGTCA	alt_1654_missing	55	27	71	80	21	82	20	55	26	57
CATGGATCGTATGCTC	alt_1654_missing	85	29	128	83	33	87	29	86	46	93
ACTATGAGAACGATTT	alt_1654_missing	19	4	19	12	3	9	5	11	6	9
ATCCTCACATCGAGCG	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
AGTGGCTGGTAACCGC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
CAAAACGATGACACCC	alt_1654_missing	28	10	29	22	13	27	11	26	12	24
TTAAGTGTATGAGTTC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
GCTACGCGCGACCCGT	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TCGGTGGACGGTTGAG	alt_1654_missing	4	0	9	13	6	9	5	7	5	15
TTTTCTTATGGACCGG	alt_1654_missing	24	16	76	46	6	43	18	47	11	33
GAATTTATGGAAAGCC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TTGCTAGAATCGCGGA	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TCTTATGACCCCAGCA	alt_1654_missing	25	15	24	7	26	13	14	15	19	8
GGCAAAGCTTCCATTG	alt_1654_missing	255	99	315	306	101	257	115	250	123	246
TGGTACAATGACTAGA	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
AATGGGCAAAAGGCTC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TGGGATTACGCTATCT	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTTCCCACCACC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TTGCCGTCATATGAGT	alt_1654_missing	10	1	13	13	9	8	2	18	2	13
TCACCCCTAGCCGACC	alt_1654_missing	54	28	54	57	28	60	19	48	25	40
ACATACTTGTTTCGTG	alt_1654_missing	57	25	59	53	25	42	27	38	18	38
TATTTTCAGCCCTTAC	alt_1654_missing	105	52	137	137	48	117	55	106	52	87
CTGCTATTTACTATGC	alt_1654_missing	67	31	118	82	31	85	29	61	32	61
GCTACACCTCCTTGTG	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TAAACGGCCCTCCTCG	alt_1654_missing	15	8	19	13	10	21	8	11	4	16
TAGGCTCTTGCTCAGT	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
AGTGAAAGTCTTAGCT	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TTTTGATAGGATGCCT	alt_1654_missing	20	17	25	27	8	16	9	19	11	15
CTTGGTTCTCATACTC	alt_1654_missing	23	18	46	40	27	22	14	27	17	30
TTATGGGCTTGCTCCG	alt_1654_missing	109	69	156	148	61	118	69	129	61	111
TCGGAACGTGCCGCAT	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
CAGTGGTTCCTAATTG	alt_1654_missing	24	5	34	37	16	32	12	44	13	27
GTCCCCAAGACTTGAA	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
GGATTCTATAGCGCGC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
GTATCCTTTCAGGCTT	alt_1654_missing	35	8	43	39	12	19	9	32	15	33
GTGTTAATCCGTGAAG	alt_1654_missing	23	12	20	29	19	28	16	33	14	23
ACAGGACCTGTCGTTA	alt_1654_missing	83	29	86	78	37	68	28	82	26	45
ACTTTTCCAGATTTCT	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TTTGCTCTACCAGAGC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTCAACTTTGTG	alt_1654_missing	32	12	31	29	9	38	8	28	12	20
GAGGAGAAATATAGTC	alt_1654_missing	0	0	0	0	0	0	0	0	0	0
TCGTCATGGCGTGTTT	alt_1654_missing	9	2	11	11	0	9	2	6	3	8
TTTGCACCTTCTTTTT	ref_5883_new	23	35	37	26	55	28	52	23	51	25
CTCCCTGCGGCCTTGT	ref_5883_new	5	14	2	1	10	1	22	1	17	2
GTATTCATTGATCATG	ref_5883_new	6	9	7	6	21	16	15	6	15	9
CTACACATTTTAATCA	ref_5883_new	20	31	20	28	38	22	32	26	45	16
TCTGGCGGTATGAAAG	ref_5883_new	0	0	0	0	0	0	0	0	0	0
CCCTGTAAATTCCGTT	ref_5883_new	3	8	7	4	17	7	8	6	10	10
GCCCCCGAGGGCACCG	ref_5883_new	15	43	29	11	55	20	37	11	36	11
GCATAGGATTGTCGTC	ref_5883_new	2	2	5	1	3	0	1	3	1	2
CCAATAGTCCTCTATC	ref_5883_new	0	0	0	0	0	0	0	0	0	0
CGGAATTTCTCCTAGT	ref_5883_new	47	47	46	37	80	39	84	36	73	26
GCTGGTCTGCTGATTT	ref_5883_new	20	36	17	18	33	18	34	14	31	23
GCTCCCTAGCGTTCAG	ref_5883_new	3	5	3	5	8	10	7	4	12	0
GTCTAGTACTGTGCTC	ref_5883_new	0	0	0	0	0	0	0	0	0	0
TCACGACGGAGGGACG	ref_5883_new	13	18	11	10	23	18	18	13	14	11
AATGTACTTAAAGCTC	alt_5883_new	0	0	0	0	0	0	0	0	0	0
CAGTTTGTTGGGACGC	ref_5883_new	30	54	42	31	63	28	53	23	48	20
AGATAGTACGACTCAT	ref_5883_new	0	0	0	0	0	0	0	0	0	0
CATCTTTGCTCGAATA	ref_5883_new	8	39	8	15	33	13	28	7	34	15
CTTCAGATTTCATATA	ref_5883_new	32	61	59	30	57	28	57	35	70	35
CGTGTCTCGTTACGTA	ref_5883_new	25	39	31	33	38	19	57	21	52	24
CAGATCTGTGAAATAT	ref_5883_new	36	61	33	35	65	19	50	47	56	34
CGTCTATTTATTAAAT	ref_5883_new	10	16	10	11	16	7	39	13	18	11
CGTTTATCCGATCCTT	ref_5883_new	7	12	11	5	14	12	10	5	7	4
TTCTGCCGCGTACATG	ref_5883_new	0	0	0	0	0	0	0	0	0	0
CCTACCGCCCGTGTTC	ref_5883_new	0	0	0	0	0	0	0	0	0	0
GTTTGATGAAGGCTTG	ref_5883_new	20	41	23	24	57	24	41	21	60	21
CGCCGGCAAGTGCCAT	ref_5883_new	46	82	60	35	105	56	91	49	105	38
GAGCTTTTGTTTAGTC	ref_5883_new	48	92	68	50	96	42	99	62	113	31
CGTAAGGTAAACTCCC	ref_5883_new	0	0	0	0	0	0	0	0	0	0
GCTTTAGATAGGATCG	ref_5883_new	31	27	35	27	46	30	48	22	64	26
CCCGGCATCTCGATGG	ref_5883_new	36	52	49	38	43	33	51	37	60	32
CCACACGCTTATTAGG	ref_5883_new	12	22	14	19	42	21	29	15	16	13
TAGATTACCGTTGGGT	ref_5883_new	21	48	33	31	73	29	55	23	57	16
TTAGGGGTAATTCTCT	ref_5883_new	2	17	5	5	9	5	3	4	6	0
TCCGCTGTTGAGCCGC	ref_5883_new	143	206	162	150	214	134	246	165	274	133
CGGTTATAATTGGATC	ref_5883_new	59	99	49	57	98	53	109	41	92	52
TTGACGGGTATCTGTC	ref_5883_new	0	1	3	1	4	3	7	3	8	1
ACTACCGTGGGGCTGC	ref_5883_new	10	28	18	18	24	18	30	17	22	14
TCGGCGATTCGAACGA	ref_5883_new	54	61	63	40	69	40	68	38	82	34
TTATCCATGGTCGAGC	ref_5883_new	9	18	29	15	20	11	26	11	22	18
CCGCACCGCGATCGTG	ref_5883_new	35	67	44	38	61	32	74	31	71	24
TGCATGCCTAGTATGA	ref_5883_new	0	0	0	0	0	0	0	0	0	0
ACTTCGTGATTGCGGC	ref_5883_new	16	23	19	22	30	16	31	21	32	16
ACTAGCCAGGGCTGAC	alt_5883_new	8	16	17	17	19	10	33	12	27	10
GTTTATTGGAGAACTT	ref_5883_new	7	12	3	3	9	4	14	2	12	6
GTCGCTACTCTGTTGT	ref_5883_new	114	212	135	116	244	105	290	111	260	99
TCCCATTTCTGCACCC	ref_5883_new	8	4	5	4	2	3	6	1	6	3
CTGCCCGCCGGCTTCA	ref_5883_new	0	0	0	0	0	0	0	0	0	0
GGCTAAGAGGTCTCAA	ref_5883_new	0	0	0	0	0	0	0	0	0	0
ATGATCTCATGAATAA	ref_5883_new	0	0	1	1	3	0	3	0	0	0
TCACGTTTTATTTATT	ref_5883_new	0	0	0	0	0	0	0	0	0	0
CCTCAGTATTGTTAAA	ref_5883_new	0	0	0	0	0	0	0	0	0	0
CTGGTGTCTGGCATAA	ref_5883_new	0	0	0	0	0	0	0	0	0	0
ATTTGCTCCTCATTGC	ref_5883_new	8	15	8	4	8	4	10	10	7	5
TTGTCCGACTGGAAGT	ref_5883_new	44	93	41	41	83	33	63	38	96	30
CTCAGTCTGGGGATCG	ref_5883_new	9	16	12	6	16	12	17	12	21	8
GCTGATCGTGTGTAAA	ref_5883_new	9	23	12	11	20	13	13	7	14	16
AGGCTGGTCGAGGATC	alt_4832_RC	42	43	72	51	39	44	50	33	60	43
TAAAAGAGTACGCTTT	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
TTGACGCGTTTTGGCA	alt_4832_RC	73	66	81	66	65	64	78	55	80	41
TCTCTTGGAAGGGCGG	alt_4832_RC	57	74	50	54	64	55	74	52	94	55
GGCCTTTTTTATTCTA	alt_4832_RC	15	8	16	11	9	11	6	9	10	14
GTGGAGAATAACTTTC	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
AGGTTTGCGAGGACAT	alt_4832_RC	71	64	72	67	43	85	56	64	56	61
GAATAGGCGCAATTTC	alt_4832_RC	22	13	20	12	20	17	13	19	16	12
CCAGGCTTTGACGGCG	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
ATGCTGCAGGTGGCCA	alt_4832_RC	51	31	52	44	35	35	40	48	38	44
GGTAGACCGACCAGTA	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
GCCCTATACGCTTGTT	alt_4832_RC	66	51	79	58	76	61	76	51	80	70
TTTCTTTCAAGTTCGT	alt_4832_RC	25	28	33	25	16	22	23	27	20	16
AAGCATTCGGGGAAAT	alt_4832_RC	200	190	264	198	185	217	152	214	188	163
TGTGCACCTGTCGCAG	alt_4832_RC	34	49	41	37	31	31	62	44	45	39
AGCCAACCATCGCGTG	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
GGCGAGCTGTCTTTTA	alt_4832_RC	27	23	44	28	25	22	37	32	21	26
TACATTGCTCTTGTCA	alt_4832_RC	53	52	79	54	56	67	48	54	66	52
ACGTGGGTTCCGGTTG	alt_4832_RC	4	14	7	7	1	6	3	10	12	12
CGGGATTCGCAAGTAT	alt_4832_RC	84	57	89	72	61	71	58	73	80	64
GGCTTGCTAACTAGGC	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
CGGTGAATTTGATGCG	alt_4832_RC	6	9	13	13	13	6	7	5	17	14
AATTAACTATAGGACC	alt_4832_RC	31	27	29	32	41	17	36	26	27	42
TGTGATATGCTAATCA	alt_4832_RC	31	37	31	31	41	35	35	28	30	31
CTGTGTCCGTCGAATC	alt_4832_RC	21	13	24	20	28	11	20	22	16	29
ATCCATGCTTTTGATT	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
TGACCCCTCGTAGTAC	alt_4832_RC	26	17	42	27	20	26	21	19	7	27
TGATTGTAATCTTCCT	alt_4832_RC	4	1	7	8	6	10	3	12	6	9
AAGGAACCTCTGATAG	alt_4832_RC	10	17	9	8	4	10	7	5	6	9
GCAAGATTTTGAACCT	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
TTAGATTAACCGCTTT	alt_4832_RC	15	15	24	15	14	13	17	17	19	16
TGCTATAGTCAAGGAC	alt_4832_RC	87	86	118	97	93	82	93	100	117	76
AGTTGGGGACATGCCT	alt_4832_RC	57	68	68	55	50	47	52	43	49	55
GTCACAACGAGACTCT	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
AGACCAGTGACGAGTT	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
ACGACGGAGAACGACA	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
ATATAAGAGAGTGCTC	alt_4832_RC	60	52	71	79	62	54	75	50	52	56
ATTGGTAATTTGTTCG	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
GGACTTTTCTTACTTG	alt_4832_RC	75	75	79	74	93	64	76	58	93	60
TTGTCCCATTTCAGGG	alt_4832_RC	29	21	42	37	16	25	33	18	20	31
GTGATCGATACGTGGG	alt_4832_RC	26	38	31	22	38	32	33	19	26	16
GTGACACTGCCAGTAT	alt_4832_RC	17	22	35	19	32	28	17	20	23	8
GTTGGATAGTGTAGTA	alt_4832_RC	14	13	13	20	17	19	12	13	20	13
GTTTATCATATTCCGG	alt_4832_RC	48	49	76	54	37	57	49	62	36	51
TTTTATTTTGGCTTTG	alt_4832_RC	7	9	15	11	5	10	7	8	6	4
TACGTTTTTCTCTCAT	alt_4832_RC	99	62	115	68	49	89	74	113	78	91
TGACTCGCGTCCAATT	alt_4832_RC	105	95	108	105	75	98	76	90	99	79
TTCTTCGGTTAGCTAT	alt_4832_RC	272	196	278	256	226	235	199	244	208	221
CCCAACCCAGGCGTTA	alt_4832_RC	48	56	54	54	61	58	51	48	60	42
GCCAAGAGTGAATAAC	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
ACCTGTGAATCATGGC	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
AGCGGTCTGAGCCTTG	alt_4832_RC	40	43	43	43	44	27	32	29	42	27
ACCAAAAAGCTTGTGA	alt_4832_RC	1	6	6	6	5	7	8	6	9	6
CAAAATTGTAAGCATA	alt_4832_RC	41	32	64	48	47	66	46	43	33	58
TTCCATGCCTCTTTTT	alt_4832_RC	4	8	3	6	6	4	12	7	8	4
TCCGGACGGGACCTAC	alt_4832_RC	137	186	184	141	172	152	210	142	201	115
GGTATCTGTTTCATTG	alt_4832_RC	0	1	1	1	2	1	1	0	0	0
TAATATTGCCATGCAC	alt_4832_RC	20	6	13	11	9	15	13	11	11	8
ATATAGTGACGAGTCA	alt_4832_RC	16	12	28	9	11	17	7	13	6	13
GTAAGGTACATGACGT	alt_4832_RC	6	8	7	5	9	7	6	9	10	11
GAGGTGGTTTTTAAGA	alt_4832_RC	11	10	11	14	14	10	17	17	13	10
CGCCCATTAACTATCT	alt_4832_RC	35	40	48	39	41	34	43	38	42	39
GTCCAGTAATACGTGA	alt_4832_RC	30	24	23	33	28	27	32	25	20	24
GTACCGCTAATAAGCC	alt_4832_RC	0	0	0	0	0	0	0	0	0	0
GTGGCATTAATGATTA	alt_4832_RC	10	12	15	11	7	8	3	9	11	11
GCCGCATGTCGCCAAT	alt_4832_RC	35	36	38	50	38	36	25	38	44	27
TTGTTTTATCGTCCAA	alt_4832_RC	48	37	60	51	69	56	58	60	44	50
GTTATTTCTCCATACG	alt_4832_RC	42	47	53	45	27	30	45	48	52	36
CCTGTCGGATCTGCGC	alt_4832_RC	80	142	77	62	143	67	147	73	177	69
CGTAGCCCGTACAGGT	ref_1612_reverse	6	3	5	6	3	4	10	7	15	9
CGGTTTGTCGGAGTGG	ref_1612_reverse	58	42	58	46	62	54	58	37	59	44
CCTAAGACGCCAGTAT	ref_1612_reverse	13	26	26	11	23	20	20	16	26	16
GTTCGCTATTTGTTCC	ref_1612_reverse	6	4	23	8	12	6	11	10	7	8
GAACGTTATAAGCCGA	ref_1612_reverse	28	17	20	21	26	26	17	18	29	26
AACGTATTAGGATTTT	ref_1612_reverse	45	47	54	39	31	32	47	49	46	35
AACCGAATCCGATTTC	ref_1612_reverse	1	1	1	1	0	1	0	1	0	1
TTTCCGTTGCCTGCGA	ref_1612_reverse	10	5	3	6	4	4	9	7	7	3
GTGAAGGAGTTTCGTG	ref_1612_reverse	52	55	77	63	64	46	81	62	54	50
TACGAGCGCGTTAGTC	ref_1612_reverse	9	11	11	11	9	15	24	10	14	13
TCGGGTTGGTGAGGAA	ref_1612_reverse	5	3	1	3	3	3	0	1	2	5
CGATACTCTAAGCCTG	ref_1612_reverse	296	419	359	332	414	290	406	322	404	282
TCTGGTTAGAGTGGTT	ref_1612_reverse	18	52	35	34	46	36	53	19	50	29
CGGCGTGTCGATTGCG	ref_1612_reverse	10	9	24	9	4	10	9	9	8	12
TGTCTATGGAGTCTCA	ref_1612_reverse	13	14	14	6	19	8	19	18	12	10
CGCGGTCAAGCCTAGC	ref_1612_reverse	1	4	3	2	3	1	2	0	2	0
CCTACCCGATGTGTGC	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TCACGGTGGTTTAGTA	ref_1612_reverse	7	2	10	10	5	6	9	3	8	0
GTCCAGCACTGTCTGT	ref_1612_reverse	4	3	1	1	3	3	3	1	2	1
GCTTCGATAACATATA	ref_1612_reverse	3	5	6	8	6	7	7	6	5	3
GTGGCATTTGCATTCT	ref_1612_reverse	15	19	16	17	12	21	25	12	20	14
CCACTAATAGGAATAT	ref_1612_reverse	143	161	172	144	150	125	175	164	175	103
TGCCTTCGCAAAACGG	alt_1612_reverse	16	14	18	16	13	20	12	13	18	16
CTCCTAAACAGCCGTT	ref_1612_reverse	152	292	201	151	298	176	332	147	338	165
AGTTTTCCGTTCATTC	ref_1612_reverse	18	18	19	19	15	10	18	17	19	21
GTAGCATAACGCCTCG	ref_1612_reverse	1	0	4	4	2	4	3	0	7	2
TTGGGGACACTGAGCA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
ATGATCCCACCCATTA	ref_1612_reverse	188	222	237	210	189	173	248	170	274	171
AAAGCTTGACCAAGGG	ref_1612_reverse	151	169	186	143	154	152	162	149	181	145
CATCCGTGTGGGCCGC	ref_1612_reverse	58	73	85	69	70	63	66	54	65	58
CTTCGGTAGTTTTCTT	ref_1612_reverse	31	29	28	41	46	25	33	30	58	37
CGTGGCTGTTGGCAGT	ref_1612_reverse	15	21	18	16	21	27	32	10	26	14
CACGAGTTGCATGGAT	ref_1612_reverse	65	75	80	64	62	53	80	51	66	49
ATTATCAGACATAAAA	ref_1612_reverse	4	1	1	4	5	4	1	2	5	0
TCGATAATGTTTTGGA	ref_1612_reverse	127	148	146	158	119	122	143	105	158	130
AATATGGGCGGGCCAG	ref_1612_reverse	7	13	11	9	10	6	9	3	12	4
GACACGCACATTGCTT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
CAGGACTAATACCTGG	ref_1612_reverse	8	16	16	21	16	17	16	8	18	15
GGGGTTCGTTGGTGGG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTAGAGGGCGGCAAAT	ref_1612_reverse	66	75	71	79	71	82	78	74	87	59
TGGCCCCACATTAAAA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TATTCAGCCCTGGCAT	ref_1612_reverse	2	0	1	1	0	2	2	0	4	0
TAACATGCGCATACCG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
AATGATAAAACACAGT	ref_1612_reverse	42	59	47	44	54	38	57	51	64	35
ATGTCGTACAGTTGAT	ref_1612_reverse	88	81	92	77	76	68	77	92	90	70
TCAATTTTTCTGTTGG	ref_1612_reverse	22	24	36	22	33	30	39	26	42	14
GCTCGTTCATGTTCAG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTAACGGCGCGGA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTCTTGATCCGCT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TCTACCTAATACGGTG	ref_1612_reverse	33	37	45	25	39	20	36	32	39	28
TTGGTTTTGGCTATAA	ref_1612_reverse	7	5	8	7	5	9	8	12	4	3
AATATAGGATCGGGTC	ref_1612_reverse	19	11	28	11	20	24	21	15	23	13
AGGACCCTCGGTACTA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCGTTAGGGTCAT	ref_1612_reverse	13	16	8	6	5	4	10	7	5	7
AACACCTTTTTACGAA	ref_1612_reverse	22	30	23	26	36	15	27	13	31	21
TCTCAACCTCTCTGTG	ref_1612_reverse	64	59	69	62	76	59	77	63	70	47
GATACATATTTACATA	ref_1612_reverse	10	12	13	7	5	8	16	7	18	7
GAGATCTCCCGTCTCA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TATCATATGCGTGTTG	ref_1612_reverse	10	15	17	12	16	5	8	8	14	17
GAGCCGCTTGTTCGTA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GATCCCAACTTAACAT	ref_1612_reverse	32	58	53	47	45	26	46	29	39	44
CGCTTCAGCCTTAGGT	ref_1612_reverse	5	5	1	5	3	1	2	1	3	0
TGCCAAATCCGGACCA	ref_1612_reverse	16	16	19	20	16	16	24	21	29	17
ATCAAGGTTACAGCTT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GAATAGTTATATGGTC	ref_1612_reverse	18	36	37	39	33	32	27	33	29	24
TACAAAATCTATTCGA	ref_1612_reverse	20	28	26	23	25	15	20	25	25	18
TTTAAGGTGTTTTGGT	ref_1612_reverse	13	12	13	18	7	21	13	3	18	14
ATCATTCCCTCCGCGC	ref_1612_reverse	51	56	68	55	63	58	65	42	55	57
AGCAGAGGTTCTATAC	ref_1612_reverse	24	39	41	24	50	24	49	34	54	27
GTCTTAAACCAACCAG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTGATATTATAT	ref_1612_reverse	25	22	25	22	17	19	29	19	19	20
ATATTTTCTTGCTTCC	alt_1612_reverse	297	206	367	279	196	246	270	238	217	255
GGTTATTTGGACCGGC	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTTCAAAACATTG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTTACCGGGTTGA	ref_1612_reverse	9	1	8	6	11	7	11	7	4	9
ATGCTGTTTAGTCGAT	ref_1612_reverse	101	102	103	84	99	71	100	84	108	71
CCACGCGGGTGTAGTG	ref_1612_reverse	50	55	58	60	45	48	59	32	61	39
TATGTCTTACCCGTTT	ref_1612_reverse	27	21	18	13	36	10	24	11	31	18
CCGGGGTTCTTCACGT	ref_1612_reverse	33	35	48	33	38	36	48	32	51	27
ATGTCGTACCCTATGA	ref_1612_reverse	23	33	24	25	18	17	26	18	20	20
GTTTAGTGAACCTGGT	ref_1612_reverse	34	52	36	54	39	42	45	36	57	29
GGAGGACTATACCACG	ref_1612_reverse	1	4	9	7	3	2	4	2	4	7
AAGCGGGCGAAATGGG	ref_1612_reverse	145	116	168	118	115	136	125	129	142	113
AGATGGCTAGCTTGGA	ref_1612_reverse	77	77	111	115	84	83	73	86	92	88
GAACGGAATAGCCCCT	alt_1612_reverse	36	41	49	35	29	29	31	40	32	38
CCACTCATTTTTTTGA	ref_1612_reverse	1	8	8	5	6	2	10	4	5	2
TGGGCCGTCCTCATCA	ref_1612_reverse	15	25	10	13	11	8	24	9	23	6
TTGCGCATGGCCCCAG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCCACTGACACAGAGT	ref_1612_reverse	17	20	12	7	19	6	17	7	17	10
TCTTTCCGCGGGCTCT	ref_1612_reverse	54	65	68	59	55	55	68	52	56	55
GTCATATGGCTACAAC	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTGTAGGCGTGTC	ref_1612_reverse	21	25	25	21	12	18	26	12	34	13
ACGATTTTGTTAACTA	ref_1612_reverse	14	13	14	7	15	13	13	9	12	10
TATAGCGCATACGATG	ref_1612_reverse	35	43	35	34	33	27	42	26	35	29
GCGCGGCCGAACCTTC	ref_1612_reverse	12	11	15	11	13	12	16	13	16	11
AATTGAACCCATCCGC	ref_1612_reverse	37	50	48	30	34	42	37	27	45	27
CGGCCCGCCTAAACAC	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
CCCTACTTATTCCTAT	ref_1612_reverse	77	86	75	56	83	59	102	62	112	60
CCGGCTGCCTCCTTAT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTTGAGTGTTGCTCTT	ref_1612_reverse	13	17	17	18	10	17	21	19	20	14
CGGCAGTGGCTACGAA	ref_1612_reverse	16	17	10	13	6	6	7	6	12	10
GCGACACGGTTGAGGA	ref_1612_reverse	2	10	5	7	3	3	7	8	10	6
TATTGGGAAATGAATC	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TACACACTTTTCTTAA	ref_1612_reverse	9	15	12	15	15	10	7	14	14	12
CGGACCGCCTAAACAC	ref_1612_reverse	93	107	121	91	109	88	110	90	117	95
GGTTAGTGGCTCACCG	ref_1612_reverse	5	4	2	9	12	12	3	5	3	6
ATTTTTGTCGACATCT	ref_1612_reverse	24	21	22	17	18	17	24	15	27	20
CTTGGGTCCGAAAAGC	ref_1612_reverse	87	119	106	99	102	76	118	74	127	95
CTAGTTAAGCTCACTG	ref_1612_reverse	60	94	80	67	104	78	86	49	99	62
TACAGTATACCCCATT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GACGTGAGTAATTGTG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTAACAACTACA	ref_1612_reverse	46	60	51	57	57	59	72	61	78	52
AGTCTCTTTTAGAGGT	ref_1612_reverse	38	41	39	30	36	34	35	22	41	22
GCGTTTAGGTAATTAT	ref_1612_reverse	45	40	25	30	25	26	19	19	32	30
CATCTTTGCAAAATCG	ref_1612_reverse	46	76	66	50	50	47	56	43	56	45
CCTAGCATCACTCTCA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTCACATGTCACC	ref_1612_reverse	12	10	19	9	15	12	13	11	16	5
GGCACCGATCCGCATC	ref_1612_reverse	12	17	23	19	17	17	21	15	10	12
CAATCGTCCTATCCTT	ref_1612_reverse	15	27	21	31	26	15	35	17	19	22
CCGTCGAAACAGGGTA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GACCACAGATCTTTAT	ref_1612_reverse	18	9	12	10	26	9	13	14	16	11
ATGAAGCGGACGTGCA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTTACAATTTCAAGTT	ref_1612_reverse	5	3	6	5	3	6	5	7	5	7
AGCTCTCACGGTAATG	ref_1612_reverse	92	76	126	107	104	105	92	89	103	99
ACTTGTCGCTAGGTCC	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCGTGCCGTTATT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
ACTAAGGCACATCGCC	ref_1612_reverse	5	2	0	0	0	0	1	2	0	1
CCTTCGTGATGTTAAA	ref_1612_reverse	138	156	154	111	128	141	141	125	149	102
GAGTTTGGGGGCACTT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TCATTCCCAATTAGTA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
ACGCGACTATTTTCGT	ref_1612_reverse	11	10	9	5	7	0	14	5	6	6
GCCCCGGCCCGTCTTG	ref_1612_reverse	21	21	33	15	26	23	19	16	28	12
CGCATGGAGCGCTCGC	ref_1612_reverse	10	8	9	15	8	15	16	12	9	8
GGTGCTTATGGCATTG	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCGCGATTTCAC	ref_1612_reverse	48	53	38	56	48	50	44	37	53	34
TATGAAAGCTGCGATA	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
AACTGCCCCCTATTGT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TCACCAAATTTCGTTT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
TCATGCTCTCTTGATT	ref_1612_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCTGCGTGAGTTT	ref_461_upstream	129	84	152	117	76	140	82	126	86	121
CACGTTACATGCCTAA	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GATTAGTAAGGATTCG	ref_461_upstream	19	26	30	20	14	21	17	13	21	19
ATTTGTAGTGCTTACA	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
AGCATCCAAGGCCTTC	alt_461_upstream	83	68	116	96	70	88	69	76	81	91
AGTCGGGTTTTCTCGT	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
AGTACATACCGTATTA	ref_461_upstream	83	73	109	85	87	71	95	62	110	96
TTTTATCTTAGGTATC	ref_461_upstream	10	12	19	16	7	17	18	12	18	15
CGAGAACTGACGTGTA	alt_461_upstream	30	24	35	32	15	28	23	34	40	14
GCTCACTCCAAACCAC	ref_461_upstream	11	18	19	27	14	12	18	8	23	11
CATTTCATCGGATTCC	ref_461_upstream	3	0	0	0	0	0	0	0	0	0
CGGCTTGTAACATCTG	ref_461_upstream	3	3	6	5	1	2	2	5	3	2
CTCTGGGTCTCGTAAC	ref_461_upstream	196	136	236	183	143	180	147	167	147	200
TGCAGGGCGATTGTGT	ref_461_upstream	8	6	16	5	7	10	10	7	4	8
GATTATTCTCCTTGTA	ref_461_upstream	44	37	45	58	25	45	27	32	31	39
ATGTGGTGTTAAGCTA	alt_461_upstream	197	152	264	201	138	199	184	201	163	168
CGCCCTCTTCTCTTTT	alt_461_upstream	175	78	179	149	81	137	102	119	77	137
TAATGAGGACATATTT	ref_461_upstream	21	10	24	23	12	17	16	16	27	20
ACGGGTTAGCCACGCA	ref_461_upstream	93	67	146	94	67	107	77	118	70	86
TTTGTCGTGGCAGATC	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GGCATCCGAACCCCGC	ref_461_upstream	87	66	113	110	69	99	59	100	59	90
GCGACATAACTGGATC	alt_461_upstream	108	71	124	93	76	102	100	106	83	82
CCAATTCGATTCTAGT	ref_461_upstream	73	46	99	72	71	69	61	73	51	55
TGGTATTTAAAGGTTT	ref_461_upstream	1	2	3	2	2	0	3	2	0	2
TTAGGTCTTGCTCGGC	ref_461_upstream	30	10	29	22	20	24	17	16	11	18
CCCCGCAGCAATGAAT	ref_461_upstream	47	33	65	55	35	55	34	42	42	38
GGGAAATTTGGTCTTA	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCATCGTCCTTTC	ref_461_upstream	42	18	52	40	27	35	27	27	27	30
CCCAGCCACCCTCCCG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GGTGTTAGAATGTTGG	ref_461_upstream	84	72	99	68	62	70	66	70	63	63
ACTCCCTTTCCCAGGC	ref_461_upstream	2	12	11	4	13	0	13	2	22	6
GTTGAGATAAGCTGCC	ref_461_upstream	41	22	32	47	32	32	29	35	36	26
TTTGATTGTGGACAAA	ref_461_upstream	35	26	37	30	29	30	21	25	34	27
CTGCGGATGGGGGAAT	ref_461_upstream	153	88	174	174	97	154	104	149	123	118
GTTTTATAACACATGA	ref_461_upstream	46	45	69	44	45	57	62	60	37	40
GCATTTGTAAGCTATG	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GGTCAGACCGACAATC	ref_461_upstream	34	26	83	64	40	52	37	47	28	56
ATTCCCTTACCCGTCA	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
TTTACCGTCCCCTTTT	ref_461_upstream	35	46	44	38	25	30	35	35	39	32
GCATTTACACGGCGGT	ref_461_upstream	342	221	400	319	245	310	244	320	270	306
AACATCGTCTTCCGTC	ref_461_upstream	24	12	29	25	7	28	20	29	22	32
GCTGCTGATGCGATCT	ref_461_upstream	25	7	19	22	10	20	13	9	11	14
GGTTCTTTTCATGAGG	ref_461_upstream	180	102	200	168	114	158	126	165	115	125
ATACGTGGGTCTGCAG	alt_461_upstream	6	1	7	4	1	5	2	2	2	5
CTTGGGGAACCGAGTT	ref_461_upstream	65	50	111	91	64	73	54	65	74	60
ATCTCAGTATATTCCC	ref_461_upstream	29	29	69	40	26	60	34	44	39	41
TAGGCTATCCATTTAC	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
TAATCTTACCTTCAAA	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGACATAACATGC	ref_461_upstream	22	17	24	26	14	7	20	21	21	25
TATCCGCCAAATACCT	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
AATCGATGAGATCGAC	ref_461_upstream	43	25	64	34	22	51	25	36	28	46
CTGGCATTTTCTTCTG	ref_461_upstream	15	14	21	23	11	23	8	21	11	16
TGCGGGGGCTCAATCT	ref_461_upstream	12	9	24	21	8	19	14	27	5	19
GAAAACCGTCTGACGG	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGAGTTCGTTCCA	ref_461_upstream	4	7	12	10	8	10	7	14	5	14
AGTGTGTGGGAGTGTT	ref_461_upstream	20	28	46	32	25	32	24	19	17	29
ACACCGGTACTCCAGA	ref_461_upstream	32	44	30	48	43	31	50	26	32	32
GGGTGGCGATGTCTGC	ref_461_upstream	32	14	36	39	18	35	25	39	21	37
ACTCCTGCCTAAGGAA	ref_461_upstream	112	97	132	144	101	97	97	91	105	92
CGGGTCCGTCTTCTTA	ref_461_upstream	6	7	14	14	5	6	8	9	4	6
GGAGTGTACTGTGCAG	ref_461_upstream	34	34	52	40	24	33	26	39	30	40
AAGGAAGGGTAATAGT	ref_461_upstream	10	6	16	10	4	8	6	15	6	11
AAGTGTTTCTGTTGAA	ref_461_upstream	219	159	242	177	165	191	132	170	169	191
TAAGGGTTAAGGGGCG	ref_461_upstream	134	87	162	135	99	130	113	137	108	137
ATAAGATTTGCGCACG	ref_461_upstream	114	78	163	138	98	128	64	110	79	127
ATTGTAACGGCTTTGG	ref_461_upstream	15	3	16	15	7	20	14	10	9	17
ATGCCTGTTTCAGCTT	ref_461_upstream	28	17	31	26	28	36	25	30	26	14
GGTCATCGGGTGTCTT	ref_461_upstream	34	21	33	36	19	40	22	37	23	27
CGGCCACTGTTAAGTC	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTGTATATTTAT	ref_461_upstream	25	27	33	30	19	29	28	27	20	29
TCTAGCCGCCTTTCTC	ref_461_upstream	26	33	44	47	28	30	28	46	32	29
TGGTGTCTTTTCCGCT	ref_461_upstream	25	12	33	24	12	23	17	25	11	27
TTGTCTTTCGGATAAA	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
AATCAGTAATAGGTCA	ref_461_upstream	27	25	46	46	27	30	19	42	17	31
CTCGAATGGATCCGCC	ref_461_upstream	42	41	51	40	44	46	31	43	51	30
TGGGCCTTAGGCACAT	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GTACCGGCCTTAGTAG	ref_461_upstream	77	70	104	80	54	59	90	85	58	59
ATCCCGCGCATGACGG	ref_461_upstream	54	31	53	49	30	51	35	40	40	36
GGTGTTGGTAAGCCGT	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGAGTGGAACTAT	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GTTTAGGATTAACAAC	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCCTCTAATCGAC	ref_461_upstream	71	80	95	83	74	59	64	67	60	82
TTGACATAACACTACT	ref_461_upstream	62	38	58	64	40	55	47	53	39	47
ATCGACGGGACAAACG	alt_461_upstream	115	73	119	76	80	82	83	97	61	89
ATTTGTTGTGTTTTCG	ref_461_upstream	13	10	28	18	21	27	14	17	15	28
GTGACCAAGCAATGAA	ref_461_upstream	76	50	102	72	50	56	40	84	42	47
GGAATAAGCCGTACGG	ref_461_upstream	205	101	242	211	126	184	154	180	115	178
TGAGCTGCATTGAAGC	alt_461_upstream	154	109	183	141	88	133	106	126	107	127
CGACCGCTGGTTACGG	ref_461_upstream	18	11	17	16	17	12	12	21	14	18
AGTTAGTTACACGCGG	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCTAACAACAACT	alt_461_upstream	113	56	112	102	72	86	77	99	77	88
TTTACGGCGTAGGCAT	alt_461_upstream	22	23	36	25	25	27	27	33	31	23
AAAAGGGATGCTGCCA	ref_461_upstream	94	75	142	124	70	96	91	107	82	89
ATGATGAAGCTGCGCT	alt_461_upstream	71	51	87	62	43	73	58	77	57	65
ATGGTCTAGTTCGCTC	ref_461_upstream	12	23	20	10	14	16	21	9	14	20
TAATTAACATTTTTTG	ref_461_upstream	39	27	63	49	21	53	33	42	29	42
TACATTCCGCGTCAGG	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCGGGTCCATGTC	ref_461_upstream	9	11	3	9	4	13	9	7	3	9
GCACATGTAAGGAAAT	ref_461_upstream	18	18	25	25	14	21	11	17	10	21
CGCCGGATCTCGTGTA	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
TGAATGCTTCTTATAG	ref_461_upstream	3	1	3	8	5	4	2	7	5	3
TGAAATCTATTAATAA	ref_461_upstream	89	39	94	78	58	79	61	86	46	61
GTGTACAAGTCCAATT	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
GAGGCCCGGGCTAAGC	ref_461_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTCAGCCCGGTCA	alt_461_upstream	164	102	193	170	97	151	100	168	95	157
AGGGACCTCATGCGGA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCATCAGCCAGGT	alt_1587_reverse	34	38	35	40	28	25	29	28	21	36
TGTAAATCTCTCTACC	alt_1587_reverse	37	28	45	31	29	43	26	39	36	42
CGCCCCGTGTTAGAGT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGCGTCGTCAAAG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGGGCCGAACTAC	alt_1587_reverse	37	33	50	38	44	37	36	37	43	47
CTTAGTTGTTAATATT	alt_1587_reverse	154	143	219	166	161	151	145	161	148	142
TACTTTCCCTGCGATC	alt_1587_reverse	15	20	11	13	18	11	28	22	18	15
CCCTGTCCTAAGGCAG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTACGTACATGA	alt_1587_reverse	2	3	1	6	7	0	2	4	4	0
AATCACCGGCGAAACC	alt_1587_reverse	35	51	24	18	40	24	66	29	65	22
AATCAATGTGTTATTG	alt_1587_reverse	74	72	75	70	69	74	64	55	61	53
TAAGTCAACCTACACT	alt_1587_reverse	69	64	87	55	64	80	66	71	71	65
GTCACAGTCGATTCAC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGTTGCTCAAATC	alt_1587_reverse	53	39	63	63	34	56	44	42	51	64
CTCAGACTCACTGACA	alt_1587_reverse	50	44	60	70	35	50	52	53	40	41
CTATATTTACAGATCG	alt_1587_reverse	76	72	82	83	91	86	60	73	62	56
TTAAGTCCCTATTTAT	alt_1587_reverse	29	14	42	21	26	31	27	15	21	21
TATCTTTTTTGGTCTC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTGCGGCTCCCTC	alt_1587_reverse	2	1	5	1	2	4	3	3	0	4
AAAACAAGCTTTTTGG	alt_1587_reverse	22	7	21	26	19	18	8	19	14	21
AATGAGGACTCGACAA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TACGTGTGCGGGTTGA	alt_1587_reverse	54	43	61	45	25	51	48	33	46	42
GAAGTTATATCTTGGA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GGTCACGGTCTTGCGG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
AGTCCGAGTTTCTCTT	alt_1587_reverse	12	10	17	12	13	21	19	13	12	13
TGGAAACCTCAATCTT	alt_1587_reverse	14	17	27	20	15	9	14	18	11	13
TAACAACCCTTTTTAG	alt_1587_reverse	58	58	94	65	48	52	49	59	73	60
CACTGGAATATCACAG	alt_1587_reverse	8	5	8	8	6	9	7	6	13	7
CTTGGCACTCCTTAGT	alt_1587_reverse	0	0	0	1	1	0	0	2	2	1
TCGGGCTTTTTATCCC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CGTGAAGCGTACGCTT	alt_1587_reverse	92	82	118	96	93	86	70	84	84	72
GGAAGTCGTCAGGTGC	alt_1587_reverse	5	4	4	4	7	4	10	5	5	4
CACACTCTTGGTTTGT	alt_1587_reverse	11	12	15	9	12	6	8	16	13	15
GTGCCTAGGTCAAAGT	alt_1587_reverse	50	36	56	48	73	56	56	59	49	41
ATGGGCATCCGTCGGA	alt_1587_reverse	14	19	24	12	14	11	10	20	20	14
ACGGTGCTGTTGTTTG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTCCAAACACGCACAT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
AAATTGTCGGTAGACA	alt_1587_reverse	54	63	76	40	43	54	39	45	52	44
GTATTTTCTCATTGGA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TCGCAACATGTGGTAG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
AACCTTCCAGGCATAT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GATTGGCTTTTCCCAA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCCGATCTAATGC	alt_1587_reverse	1	1	0	0	1	1	1	1	0	1
ACGCAGGGCTACCTTG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TATTGGGTCTGCCCCT	alt_1587_reverse	3	2	4	3	2	2	4	3	0	1
TGTACCTTGAGTAGGC	alt_1587_reverse	11	15	13	15	11	15	17	17	19	12
CTTCGGGGGGAGGCGT	alt_1587_reverse	12	15	18	19	2	18	10	11	14	19
CTAACGCCGTACGATT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CCGTAACCACGTTAGG	alt_1587_reverse	16	9	13	7	7	9	7	13	5	13
GGATCAGGAGATCGTC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTAGAGTACCATGGTC	alt_1587_reverse	16	26	37	27	22	22	27	20	17	19
GGATGTTATTGTCGAG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTTCTGCTTATGG	alt_1587_reverse	9	10	14	14	14	11	17	12	14	3
TTGACCGAAATTACAC	alt_1587_reverse	25	22	42	28	27	32	30	20	22	24
GAAGTTAAGGCCCCCA	alt_1587_reverse	45	24	48	31	42	45	37	49	30	36
GTGTAAATAGGGTAGA	alt_1587_reverse	7	3	11	9	6	14	7	3	5	4
GAAACCTAGCTTCTTT	alt_1587_reverse	246	217	234	200	210	201	233	230	260	203
TTCGCCATCGCGTTTA	alt_1587_reverse	56	50	38	54	54	47	45	65	46	39
TCATTTGCGCTATTTC	alt_1587_reverse	69	72	96	81	72	78	56	99	78	70
CCTGGCGGCTTCATTA	alt_1587_reverse	21	30	38	23	33	27	42	14	40	21
TGTATCCCCAGTAGCT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTCCGGCTCCTCA	alt_1587_reverse	88	89	115	93	65	80	101	88	85	73
CAAACAGTTCCAATCA	alt_1587_reverse	78	80	82	65	57	64	65	57	69	63
GGCCGCTCTAGTGTTA	alt_1587_reverse	9	12	12	14	21	24	14	15	13	12
GAGGGGCCGGTCTTTT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTAATCTGACACA	alt_1587_reverse	3	5	5	1	3	4	3	6	3	3
CTAGCATATTTGGAAA	alt_1587_reverse	1	7	10	5	2	1	11	4	4	4
CACTATATTGTTGCAT	alt_1587_reverse	7	6	7	16	8	7	7	2	11	6
ACGCCCTGCCTTAACA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TATGCTAGCGTTATCC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TAAACGACAATGAACC	alt_1587_reverse	29	20	33	21	19	32	15	26	18	14
ACGGCGATTCTAACCG	alt_1587_reverse	15	13	19	14	16	23	18	22	17	23
CCCCGCGTTTCTAAGT	alt_1587_reverse	4	9	3	3	15	2	14	4	17	2
GACCAGGCCTATGTAT	alt_1587_reverse	50	59	90	85	64	73	38	78	57	63
TTAGGATGCGTGGGTG	alt_1587_reverse	25	9	16	12	15	17	19	13	11	19
TCTAAGGTTTGTACTT	alt_1587_reverse	94	65	107	100	65	78	78	77	77	85
TTTGATACTCTCTGGC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTTGGCATGAACT	alt_1587_reverse	24	29	40	37	23	25	22	26	19	18
ACGACGGCGCGGAACC	alt_1587_reverse	89	90	97	89	81	94	79	95	77	83
GTTTTACGCATGTTTA	alt_1587_reverse	3	7	2	5	3	1	3	3	5	3
GTTTCGATTATTTTTA	alt_1587_reverse	25	17	24	22	16	19	23	18	17	13
TCGATTAAATAATAGA	alt_1587_reverse	4	4	2	2	1	3	5	0	2	2
CAGTCGGGCGGCCCCA	alt_1587_reverse	11	8	18	12	15	13	14	12	15	14
ACGCTTACTCATCCGC	alt_1587_reverse	9	16	14	13	16	10	11	7	10	9
ACGGGTAGGATTTGTC	alt_1587_reverse	73	74	117	77	72	75	78	78	89	78
TTACTGATCTTAGTCA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCTGCTACAATTT	alt_1587_reverse	77	54	64	71	55	65	45	59	57	68
AACTACCAAGCGTTAT	alt_1587_reverse	50	40	55	52	41	37	48	44	48	48
GTTTTCACATGTCAGG	alt_1587_reverse	20	32	48	24	47	29	30	49	27	29
AGCCAGAGGGCAAACA	alt_1587_reverse	28	19	31	30	17	19	15	23	21	26
CTACTTAAGCGTTATT	alt_1587_reverse	217	159	224	268	159	206	193	197	198	192
GGCATCAGTCTCCGCG	alt_1587_reverse	3	7	8	5	11	2	8	4	3	4
ATGTCTGATATCGAGT	alt_1587_reverse	13	20	28	20	19	18	29	15	20	19
ACGTTCTTCGCAGTCT	alt_1587_reverse	17	23	17	32	21	31	23	30	20	22
TGATGAACACTGGAAA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCGCCCAGGGACG	alt_1587_reverse	83	85	124	96	86	94	86	107	95	68
TGGGCATTCTCTGAGA	alt_1587_reverse	45	45	49	60	54	56	60	59	56	60
ACTTCAATTGGTTCGG	alt_1587_reverse	24	28	24	13	24	27	28	29	17	22
TGCAGCCTGGGCGTTT	alt_1587_reverse	116	91	143	123	99	108	104	88	115	112
ATTTTTCCCGTGGATT	alt_1587_reverse	42	31	61	53	33	37	38	41	33	39
CATCCGCCCATATTTT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCCGCTCATCAGG	alt_1587_reverse	33	14	26	22	22	27	26	34	27	23
TTAAGATATCTCGGCA	alt_1587_reverse	53	34	41	41	21	33	26	25	42	34
CGAGTTTGGTCCAGCG	alt_1587_reverse	38	30	32	40	33	29	38	42	42	30
GGGCTAACCCTACAGT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GTTATGGTTGACAACG	alt_1587_reverse	9	17	16	17	19	10	13	18	9	16
ATCCAGACTGATTGAT	alt_1587_reverse	13	9	11	14	10	5	7	5	17	9
CATATACTGTAAGATT	alt_1587_reverse	22	17	44	28	20	18	26	20	28	28
GGTACGACGGTACCCC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGCTCTCGTCCAC	alt_1587_reverse	49	28	37	38	42	36	32	42	34	44
GACCAAACATATAACA	alt_1587_reverse	20	11	24	20	11	11	11	5	16	14
GATGCAAGGTCGGGTG	alt_1587_reverse	14	6	16	13	17	7	15	13	17	8
TCCGTGTTTATGCATT	alt_1587_reverse	44	37	48	45	23	52	30	39	40	21
GCTTTGGGTCATATCC	alt_1587_reverse	102	74	136	115	78	114	80	110	81	93
TGATATTTCGGAACAT	alt_1587_reverse	35	21	46	22	28	27	28	24	36	27
CCAGTTATGTCAAGCC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CCTATCCGGAAGGCTC	alt_1587_reverse	8	8	10	17	10	6	4	5	9	8
ATGATGCCGTATGTCC	alt_1587_reverse	40	30	36	51	23	40	30	31	46	41
GTAAATGCACTCAGTA	alt_1587_reverse	84	99	111	85	73	79	76	83	98	85
GATCTCTGGGAGGATA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TCATATTATTAAGGTA	alt_1587_reverse	31	14	21	35	19	26	19	17	15	24
ATAGTTCCGCCTGACA	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GAATTATCCATCTACC	alt_1587_reverse	24	16	26	20	13	26	17	22	20	21
ACCCGCATTTAGTATA	alt_1587_reverse	11	10	11	6	8	11	15	8	9	6
AGATCTCGGTTTTGCG	alt_1587_reverse	13	12	19	22	5	14	14	7	7	11
TCATTCTGTTAGGCAC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCGAGGGGCCGCC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
CTCCACTAGCTCCCGT	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TAATGTTTTGTGGTAC	alt_1587_reverse	58	37	36	40	41	34	53	31	39	25
GATTCTTAGAGCTTCG	alt_1587_reverse	20	20	41	28	24	27	16	19	21	14
GTTCCTTTCTGTCAAC	alt_1587_reverse	10	18	22	14	15	11	10	11	16	4
CAGCATCTCCTCCTTC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
AGCTACGCTCTTCTGC	alt_1587_reverse	34	27	60	41	30	33	41	43	50	26
CGCGCGTTTCCGGTGA	alt_1587_reverse	3	9	7	4	4	6	3	4	6	4
CCGCCTTCCATCCCTT	alt_1587_reverse	1	5	2	3	5	7	3	0	3	2
CGTCTCGCCTGTTCTT	alt_1587_reverse	19	13	8	16	10	15	16	13	14	12
TTAGAGTGAATGTACC	alt_1587_reverse	42	33	36	49	24	46	39	28	48	36
GCGAAAATTGAGAGTT	alt_1587_reverse	56	39	65	44	35	54	41	53	35	41
TGGTATTTGCACCCTC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
TTACATGTCCCCCGTT	alt_1587_reverse	22	24	17	21	14	15	17	13	23	13
GTACAGCCCCTTCCCG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GCCTAATACTACTAGA	alt_1587_reverse	46	19	53	42	33	48	26	32	51	31
TTGGCCAGCTTAGAAC	alt_1587_reverse	41	30	34	28	27	16	36	14	29	27
TACTTTACTTAAGTTC	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
AACCCGCATGGGGCTA	alt_1587_reverse	21	25	40	33	16	28	22	16	13	19
CTTCTTATAATGGGTG	alt_1587_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGGCACTTTCTAC	alt_5908_new	1	2	3	3	5	1	6	2	2	2
CTTCTTCATGACACTA	alt_5908_new	0	0	0	0	0	0	0	0	0	0
CGTCGACCACCTACAA	alt_5908_new	0	18	3	4	34	3	24	2	20	3
TACGCCACCTGTCCAC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TATCCGGTAAGGTATT	alt_5908_new	11	18	8	6	11	5	13	9	18	11
TGGCCACCGTGCCGTA	alt_5908_new	24	37	32	26	33	24	35	13	35	23
GTAGAACCTCCGTACC	alt_5908_new	4	15	6	8	15	7	16	9	17	11
ACTAGGCATCATGCGT	alt_5908_new	0	0	0	0	0	0	0	0	0	0
CGGTGCTGGAGGACTT	alt_5908_new	6	12	11	5	8	11	10	1	12	3
CTTCATTGGAGTGAAA	alt_5908_new	17	23	22	16	40	23	29	13	35	20
ATTGGGACTCCCCGAA	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GATAATCTCGTGTGCC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TCGTAAGGGTTAATGT	ref_5908_new	1	10	1	5	5	1	8	0	5	3
TTCATAGCACGCCCAG	alt_5908_new	32	54	34	28	55	31	64	27	72	33
ATCGAATGATATGATT	alt_5908_new	5	6	5	15	18	13	8	11	10	1
GTTCTAGCTAATTTTC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TTAACTCGCAATTGGG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TGCTCAGATGCACGTC	alt_5908_new	7	17	7	6	6	5	11	7	11	7
CTTCGTGAGCAGTGAG	alt_5908_new	4	12	11	5	10	14	8	6	7	15
CTTTTTCAACTCAGAT	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TACATTTGTTTATGGG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TGAAGTCGGCCTGTGA	alt_5908_new	0	0	0	0	0	3	0	0	4	0
CCCTACGATCACACTA	alt_5908_new	17	15	19	11	19	8	24	16	24	9
AATATGATTCCAGGGC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
CGTCAGGGTTCTGCTT	alt_5908_new	7	11	6	7	17	11	16	7	25	8
CAAGCCAACAGCTCGG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GGGTAACATTAGATAA	alt_5908_new	52	98	74	55	55	43	83	49	80	51
ATTAGCCGTATCGCGG	alt_5908_new	0	1	0	1	0	1	1	2	1	0
TGTCTACTCGTTAGTG	alt_5908_new	2	10	2	3	9	2	12	2	4	5
TCTAAAAGTGCCCGAG	alt_5908_new	5	7	2	6	16	4	6	5	8	1
ATACTCGTATTGCTCT	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GTCTTTGCGGTCGGCT	alt_5908_new	5	6	13	11	15	8	21	12	21	14
CTTTTTTTACCGTAAC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
AAAGAGTAAAAATCGG	alt_5908_new	28	42	32	23	35	27	40	17	46	33
TTATCCTCCTACTAGC	alt_5908_new	7	7	14	6	15	14	16	9	9	9
CGCTCACTCGTACCGG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
AGTTCGCGACTTTGTC	alt_5908_new	9	11	11	4	12	8	10	9	13	6
CTATTCCCGTTATTAC	alt_5908_new	0	1	0	0	1	0	0	0	0	1
CGTTAGGGGATGCTGG	alt_5908_new	13	11	9	7	16	12	21	4	20	10
GCTTAGCCCATTGCTG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
ATAAAAGCGGCTCTTG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TCACATTATACAATGG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
AAAGTATCTTATTCAC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
CATTTCGGTAAACCTC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
ATATGTGTGTGTTAAA	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GTCATAAGGGAGGTCA	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TCGTCTATATCTCATG	alt_5908_new	3	7	2	3	3	2	7	2	5	1
GTATCAAGGTATTCGT	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TGAACGTTAGAGTCAT	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GATCTCCCCATTTTGG	alt_5908_new	2	3	0	0	5	0	7	0	2	0
TCTCCCCTTCGGTCAC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GGGGCATATCTGTAAC	alt_5908_new	13	25	24	18	26	12	20	17	23	13
GCCCGTCAGCTTCTAC	alt_5908_new	15	22	8	12	24	19	33	12	19	17
CGATCCAGAGAAAGCT	alt_5908_new	0	0	0	0	0	0	0	0	0	0
CGTTCTTCCTCTGGGG	alt_5908_new	19	32	20	19	25	10	26	18	28	11
GATTATCACTTACTCG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
CCGTAAGTGATGCATC	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GTCGTTATGCGAGTCG	alt_5908_new	3	5	13	10	11	3	2	6	15	2
CCGTCAGGTCTCTTAT	alt_5908_new	11	21	7	6	29	9	11	11	16	18
TTGGGACTTTTGTGGG	alt_5908_new	3	6	5	2	4	5	9	1	14	6
TACCGGGCTCCTGCCT	alt_5908_new	15	11	10	10	15	7	14	6	16	6
GGTTTATGCATACATG	alt_5908_new	0	0	0	0	0	0	0	0	0	0
TCTCTGTCTTTACCTT	alt_5908_new	0	0	0	0	0	0	0	0	0	0
GTATTGTTTTCTTGTG	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
TTTGGGGCCCTTCACT	alt_3387_missing	12	14	7	6	17	5	19	10	9	4
CATATAGGATCGGGAT	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
AATGAATTGCTTGCTA	alt_3387_missing	3	11	8	6	12	1	4	8	6	6
TACTTCGCTTTCGCGT	alt_3387_missing	205	15	223	217	24	160	17	193	27	172
GGATGACACCAGCCCG	alt_3387_missing	14	24	17	25	24	11	16	16	28	17
CATGATATGAGGAAGA	alt_3387_missing	14	25	15	15	35	16	33	18	38	10
TCAAGGGGGACATACG	alt_3387_missing	29	48	50	37	56	37	66	37	58	31
TCATGGGTTCCACGTA	alt_3387_missing	2	12	5	6	4	3	11	4	16	4
GGTTTACAGGAGCCAC	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
ATCCTACTTCTCCCTA	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CGCAGCAAAGTTGGAG	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
TTTTCCTACACTTATC	alt_3387_missing	18	21	4	9	17	14	20	6	15	11
TTCATACAACTCTTAT	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CCCCAAATCCGACCGG	alt_3387_missing	2	4	3	8	2	1	4	3	2	0
AACCCGGGGAATAGTA	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
GTTATACGTAGCTTAG	alt_3387_missing	52	80	59	64	107	54	103	37	118	56
AAGCTAGCAACTTCGC	alt_3387_missing	15	23	17	16	25	17	24	8	24	12
TATCAAGTGTTGTGCT	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
TTCATTACGCGGCGAC	alt_3387_missing	10	10	13	7	11	7	8	7	14	6
ATTCAATACCTTTCAG	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
ATTAAATGTGCGTCCA	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CAGATTAGTATCGTAA	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
TCTTTTTCCTAATTAT	alt_3387_missing	10	33	21	26	28	24	45	14	50	18
TGTCCGTTACTGATCC	alt_3387_missing	20	23	26	22	33	22	37	40	39	23
CGTGACAGTTTGTGGC	alt_3387_missing	6	12	5	6	15	13	15	5	13	5
ATTCTGCACGTATAAG	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CCGAGGTACCGAAACT	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
GTGATTCATGATCCGG	alt_3387_missing	17	51	39	26	38	39	59	31	56	28
TATACGTCTGTTGCTA	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
AGGTATTGCTTCCCTA	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CAGGCTAAGGGACATC	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
AAGAGCCATAGCCTTT	alt_3387_missing	21	22	22	8	26	14	19	12	15	8
TGGCCCTACGTCCGTT	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CGTATCCTGGTTTTTG	alt_3387_missing	8	14	11	18	19	13	15	9	17	11
GGAGCACGCATTCGGT	alt_3387_missing	70	69	86	78	102	62	80	52	103	67
TTTCTATTGTAATTCT	alt_3387_missing	12	16	19	22	32	16	33	14	16	16
GAACCCGAATGATCGG	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CGAGCTAAGATCCTAT	alt_3387_missing	31	92	43	42	83	36	82	22	58	40
AGCTGTGCATGTGAAA	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CTCCGCACCTCGGCCC	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
AGTCGTCCGCCGTTGC	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
ACGAGGTCACCCCCGC	alt_3387_missing	1	5	1	2	3	2	7	1	4	1
TTATATGGTCAGGGAC	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CTTTCTGAGTAGTAAC	alt_3387_missing	0	2	1	0	1	2	3	0	0	2
CAACAGGCGTTGATAT	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
GAACGCTGGTTATCGC	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CCTAGGAACCTCCCCC	alt_3387_missing	3	7	1	0	8	1	7	2	13	0
GCATCGCGGCGGCTCG	alt_3387_missing	36	37	25	24	30	28	44	28	43	16
CTATCTCTGAGCAGAT	alt_3387_missing	0	0	0	0	0	0	0	0	0	0
CCGGGCTTCGGGGTTG	alt_3387_missing	3	8	5	2	3	4	10	3	6	7
ATCCTTGTTGCTCAGT	alt_3387_missing	6	18	11	12	23	13	32	22	21	13
AAGGCACGCCGTGTCC	alt_5061_reverse	64	54	77	59	85	67	81	61	83	52
CCTCTTGTTTTATGAT	alt_5061_reverse	11	18	26	46	15	24	34	19	29	16
CTTTGACATATTCGTT	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTGACTTTCTGA	alt_5061_reverse	17	11	10	9	9	6	13	8	8	11
ATCGTGGACAGACCCT	alt_5061_reverse	5	1	8	8	4	7	5	3	7	3
ATAAGCACCCCGCGGT	alt_5061_reverse	9	21	16	26	17	13	19	12	24	19
CGCATATCTCGTGTCA	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
CGCGTTACGGCGTCGT	alt_5061_reverse	22	20	15	21	17	16	19	20	15	18
ACGCCCCCCCTTAAGC	alt_5061_reverse	20	28	26	12	20	16	26	19	32	13
GCGCTTGTCACGCGGC	alt_5061_reverse	56	69	65	67	54	60	69	54	81	72
CTCTTCCACGCGCTGA	alt_5061_reverse	209	203	255	213	211	187	217	179	208	162
TCCTAGAGTCCCTTAC	alt_5061_reverse	23	59	25	42	64	15	49	32	51	23
TCGTATTACGAAATGT	alt_5061_reverse	52	47	43	44	47	26	53	35	53	42
TTTATGCCCGGCGTAC	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGCAGAGGCCATA	alt_5061_reverse	43	49	68	64	45	46	45	47	64	51
TTGCTACCAAAGACGA	alt_5061_reverse	20	40	23	27	39	21	40	22	39	17
TGTCCACATCTAGACG	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGCTTGTTCATTG	alt_5061_reverse	21	27	31	16	17	26	27	18	25	19
CCGCCAGGCCATCACG	alt_5061_reverse	63	77	109	70	70	64	91	60	85	63
TCTCTCGCGAAGGCAA	alt_5061_reverse	17	12	20	16	24	12	14	20	28	21
GCACTCGGTACAAAGT	alt_5061_reverse	8	16	5	9	7	8	9	6	8	8
GGAATGTCCAGATTGC	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
TCGACAGCTTTTAGCA	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
TGGATGGTTCTTCTGG	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
TACCTAGTCCTCTATT	alt_5061_reverse	6	12	5	5	11	6	21	8	7	8
AAATGTCTCCTGCGTC	alt_5061_reverse	48	55	64	49	39	46	59	50	82	52
GTTCCATGGCTCTTGG	alt_5061_reverse	8	13	8	4	16	9	10	1	15	5
CTATTGTTCGGGCTTC	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
CTAATATAGGGTCGGA	alt_5061_reverse	17	21	6	20	17	20	17	10	12	13
CTGTCTCTGCTGTCTC	alt_5061_reverse	13	12	13	16	21	16	19	11	21	10
GGAGACATCTCTTGGA	alt_5061_reverse	21	38	42	36	39	29	35	34	50	29
AACCGTTCTAGCTTCG	alt_5061_reverse	60	57	57	44	52	49	60	53	41	51
GCTTCTGTTCTTCTTC	alt_5061_reverse	48	32	55	38	38	46	43	26	39	41
GGCTTGGTTAAGGCTG	alt_5061_reverse	23	25	31	20	15	15	22	21	21	14
TCCTCGATTCATTTAT	ref_5061_reverse	117	137	142	147	170	116	144	130	173	107
TCGTTAACCTAATCGC	alt_5061_reverse	16	16	10	10	14	13	17	8	13	15
TCAATTCCCAAAACTA	alt_5061_reverse	75	106	113	101	120	76	109	73	130	77
ACACCGGTTGGATGAT	alt_5061_reverse	74	93	84	82	120	67	120	77	118	58
CCGATGGTTATACGCC	alt_5061_reverse	3	16	6	12	25	8	13	7	18	3
GTCAGTCGCTTAAATT	alt_5061_reverse	3	5	2	2	1	2	3	0	3	1
CGCGGCATCATCTACG	alt_5061_reverse	2	15	1	6	6	6	4	12	7	7
CTCTGTGTTGAGCAAG	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
TAACTCAAATCAGCAG	alt_5061_reverse	70	79	81	70	71	67	74	79	60	74
GGGAGCGCCTAACGCT	alt_5061_reverse	66	60	77	72	77	59	55	53	61	64
TTTCCTTCCCGTGCTA	alt_5061_reverse	33	18	43	15	23	18	23	30	28	22
CAATGCCAGTCGCTTT	alt_5061_reverse	8	5	5	6	11	5	6	4	8	7
CGACACGTCGCGTCGC	alt_5061_reverse	3	3	6	3	6	1	2	2	0	5
CACAGGGGTTCGAATC	alt_5061_reverse	6	5	3	5	7	10	5	6	12	1
TGCTCGGATCTGTCAG	alt_5061_reverse	21	27	17	13	29	13	24	13	30	25
TGACTTCTTACTCTGT	alt_5061_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTATCCTGGGCAC	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GTGTTTTATTAAACGC	ref_5646_new	47	61	52	60	65	40	78	48	71	42
TTGACTAATTCGGGCG	ref_5646_new	26	34	29	29	30	24	41	24	33	13
CGCGTGTTTTGGCCAG	ref_5646_new	64	56	56	45	38	41	53	67	58	59
TAATTGGCGCTCGCAC	ref_5646_new	17	30	21	19	31	13	29	15	22	14
TCGTCCGAATGCCTCG	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TTATGGGGGCTAAAAT	ref_5646_new	47	44	52	55	38	35	41	33	48	36
TTTGACAGGATATCGT	ref_5646_new	4	10	13	7	8	11	4	5	16	13
TAGGCAAGTGTGGCCT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
CGCACCCATGACGCTG	ref_5646_new	12	9	13	17	12	12	15	13	10	15
TTCTTTTTGTGGGCCT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GTCTGAGTATGAATTA	ref_5646_new	105	132	126	142	181	107	164	115	181	87
ACTGGGAACCTTATTT	ref_5646_new	32	49	47	37	41	33	32	48	43	32
TTTAAACACTTTGAGT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
ATGTACCCTTCTCCAT	ref_5646_new	3	5	8	8	11	11	10	11	9	5
TTTACGAGGCGTGCTA	ref_5646_new	0	0	0	0	0	0	0	0	0	0
AGGTGTCCAGCCTACT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
ACGGATCTCAGCTGTA	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GGCGAATCGGTCCGAC	ref_5646_new	55	83	79	55	79	50	67	52	80	61
TTGTACTTATGAGATT	ref_5646_new	67	82	77	91	82	75	81	69	86	72
CCCGGTCTATGAGTTT	ref_5646_new	10	12	6	3	9	6	13	9	9	8
GAGTCGCCGGAGTAAG	ref_5646_new	38	47	37	30	54	22	41	33	50	32
ATTGATGGAGATTCGG	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TATCTACACGCGGAGG	ref_5646_new	8	15	14	7	16	10	15	10	13	11
AACGTTTTTATCTTTA	ref_5646_new	50	40	64	34	30	40	39	47	42	33
TCGACAGAGATTAAAT	ref_5646_new	22	26	34	18	29	16	24	25	25	17
ACCTAATTAAATGTAT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
CGACTCCTGTATTATT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TTCTCGACTGCACCGT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
AAGGCCGACCCCAAGG	ref_5646_new	36	55	46	46	30	29	40	27	39	35
AGTATTCTAGCGCACG	ref_5646_new	7	6	16	5	13	1	7	13	8	9
TCTGTCGGAGTCTTCG	ref_5646_new	53	79	78	54	90	42	69	57	89	47
TACTGTGTCCGTCCGT	ref_5646_new	23	22	25	23	30	21	29	14	26	16
TTACGTGGTTTTCCCG	ref_5646_new	10	4	14	9	10	8	15	5	11	7
ATTCATGTATTGCGCG	ref_5646_new	45	42	45	37	46	43	52	21	50	37
GGCGTATCTTAGACAA	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GGAAGGGGCTCTTTCT	ref_5646_new	1	3	3	2	4	5	5	4	2	3
ATCTCAGTGTATGCGG	ref_5646_new	74	103	79	66	94	68	94	53	95	52
TCCTTCCTTCCCATGC	ref_5646_new	0	0	0	0	0	0	0	0	0	0
CTATTTCTCGAACTCG	ref_5646_new	35	27	23	24	38	26	23	31	25	16
CGCCGGTCGTTGCATG	ref_5646_new	71	83	85	67	92	64	81	59	101	62
TAGAGAGTTATATTCA	ref_5646_new	24	30	27	16	30	21	25	14	21	26
GGGCACCATGATGGGC	ref_5646_new	41	41	58	50	46	29	50	37	46	47
GCCATAGATGCACAAA	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GGACCCTTTGGCATTA	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TTGAGCACTGTTGTCT	ref_5646_new	35	39	39	25	39	24	47	17	38	20
TGTGATCTCAAGTCCG	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TGGGGATTTTTGACAT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TCCCGTTAAGACGTAT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TGCGAGTAATACGATC	ref_5646_new	6	9	3	10	10	9	10	4	13	6
GACGACTTTAAGAACT	ref_5646_new	17	33	26	12	24	19	31	19	16	9
AGTTTTTAAGGTATTG	ref_5646_new	29	39	25	40	22	25	19	34	27	27
TCGTTCAAGGGGGATG	ref_5646_new	29	24	30	18	30	25	37	18	33	27
TCCAGGAAACTGTTTG	ref_5646_new	7	10	12	6	15	3	12	11	11	4
AAGTTGTGTTATTTAC	ref_5646_new	52	51	45	37	62	32	51	22	49	43
CTGGGTTTCGTATGTC	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TTGATAAACACTCATT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
AGTTGTGGGCGCTATA	ref_5646_new	40	58	54	37	34	36	44	40	46	39
TGTGTTACAGGATGTC	ref_5646_new	5	6	0	7	6	7	9	6	7	6
CTTGCAAGACCGTACA	ref_5646_new	10	6	13	6	5	7	10	11	8	7
TAGCGTTCGCACGGCG	ref_5646_new	18	21	16	17	10	20	24	14	22	8
GCGTTTACCTCATTAT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
ACGTGTTCTTACGTCC	ref_5646_new	76	84	99	71	81	53	100	88	94	73
AAGTTAGGTGACCGCT	ref_5646_new	5	5	10	3	7	8	8	5	7	12
GGCTTCTGGTAATTGT	ref_5646_new	6	5	6	10	13	6	9	9	11	8
GTTCCCTACCCGTAGC	ref_5646_new	5	7	6	2	3	2	5	2	11	0
GAGATACGGGCTAGAA	ref_5646_new	6	1	7	7	9	9	2	2	12	4
GCGATTTATCCGTGAC	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GGTTATCTTCAGAGCC	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GCGTACTCAATCTTAA	ref_5646_new	53	52	61	52	52	45	81	49	52	55
TGAAGGTCCCTTATTT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
GGAGTAATTTCACCGG	ref_5646_new	14	17	20	21	15	10	22	16	17	17
CAGACACCTTTTTCGA	ref_5646_new	0	0	0	0	0	0	0	0	0	0
CGATGGCGTAGAACGG	ref_5646_new	9	6	13	7	9	7	13	12	12	5
AGTTTCCAGACTCACA	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TTTACCTATCGATTAG	ref_5646_new	0	0	0	0	0	0	0	0	0	0
TAAGAGTTCGTCTGGT	ref_5646_new	0	0	0	0	0	0	0	0	0	0
CGCTGATCTTATCCCC	ref_5646_new	17	27	16	16	15	6	22	6	10	10
ACCTTCATCAACGGAG	ref_5646_new	13	19	12	14	17	14	31	12	23	22
TTAGGTGTCTGGCACT	ref_5646_new	16	30	14	20	18	9	25	19	20	14
TTCATGGATAATGTTC	ref_5646_new	16	27	28	13	31	19	25	9	32	15
CTTTGCCACTCTGTTT	ref_5646_new	14	22	22	35	24	18	25	16	18	6
GGTTAGAGTGTTATGT	ref_5646_new	109	160	154	104	109	111	151	102	148	94
GTGTTGGGAATCATTA	ref_5646_new	114	136	129	92	138	108	160	84	129	98
TCCCTCTGTTGTAAGT	ref_5646_new	13	23	26	16	32	13	33	13	26	17
ATAGGTTTTTCTTGAC	ref_5646_new	10	17	23	11	16	19	11	16	18	16
AGAAGCTCGCGTTTTG	ref_5646_new	37	23	35	19	20	30	28	19	38	26
AAGTGTCTGGCCGGTC	ref_5646_new	0	0	0	0	0	0	0	0	0	0
CTGGCTTCGGTCGTGT	ref_5646_new	13	16	5	13	11	9	15	14	11	10
AAGCTTAAGTTTAGGG	ref_5646_new	49	59	56	56	61	62	62	53	68	42
ATAGTGCTGTTTCATG	ref_5646_new	148	163	162	139	170	153	173	130	164	115
TAGGTCCTGTGGGTCG	ref_5646_new	2	11	11	7	10	3	8	6	9	5
TTGGCAAGTGTGGCCT	ref_5646_new	67	59	67	58	54	63	69	51	58	56
ATCTGTGTTCCAGTAT	ref_5646_new	3	14	5	3	10	4	15	10	7	4
TATGGGTGGTCCATCG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTACTACAGTCTCCTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CATAGGCTTGGATAAT	ref_3416_fdr	25	19	42	32	16	37	20	24	9	32
TTACGTAGTTAGCTCG	ref_3416_fdr	47	30	61	55	27	63	37	31	35	44
TCGGAAAGCTTGTCCT	ref_3416_fdr	25	4	13	25	15	8	14	19	16	12
TCTTTAGTGGAACCCC	ref_3416_fdr	100	71	102	87	50	78	60	93	73	81
TCAAACTTTGGTCGCG	ref_3416_fdr	51	30	98	64	33	45	37	60	41	41
GTTCCCTGTAAAGTAG	ref_3416_fdr	59	24	77	59	37	64	51	43	35	51
CCCATGTCAACCCGGT	ref_3416_fdr	37	51	54	26	44	24	42	49	41	28
TCCAGAGCAGGCGTTA	ref_3416_fdr	30	19	26	51	26	26	21	34	23	22
ACGTTTCAGTGTCCCT	ref_3416_fdr	104	68	107	100	68	99	55	99	65	91
TGCTGTTAGGTCGGAA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCTGTCTAACTTT	ref_3416_fdr	3	6	6	1	7	2	3	2	2	2
GAGCCTAGCGGTCATG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGGCAAAACGATTCTA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GGTAAAATGTCGTACT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCCTCAAGTTCC	ref_3416_fdr	120	66	109	117	69	120	49	100	53	94
ATTAACCTCGGCCCTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTCATGACTGGCGAAC	ref_3416_fdr	6	5	10	13	6	7	5	9	0	8
AGTATGCACGATAAGG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCTCGGAACATTG	ref_3416_fdr	2	5	1	3	5	3	5	3	8	0
TATGCCAGCGCCGCTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GTCATTCATCGCGTGG	ref_3416_fdr	91	44	128	103	58	75	55	96	48	85
GTCATCGTTCAATGAA	ref_3416_fdr	142	92	169	168	92	144	115	169	82	133
GAATATTCGTTAGGAT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CAGAAGTATATCTCAG	ref_3416_fdr	12	11	21	17	2	21	14	11	7	20
CACTTGCCGGGTGTTC	ref_3416_fdr	18	20	25	18	8	12	10	30	16	21
CACCGTTACTTTAAGG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTAGAATGCACTC	ref_3416_fdr	38	32	57	43	23	37	26	40	24	45
ATCCTATCCTTTGAAT	ref_3416_fdr	21	16	26	22	11	16	10	19	10	19
TGCCCACTGGATTCTT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TATTCTCACGGTTCTC	ref_3416_fdr	39	34	55	62	33	26	32	41	34	45
CATGGCGCCGGCATTC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTTCGTTTGGGCA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTCGGTAAACCGT	ref_3416_fdr	18	48	26	20	41	26	39	24	38	22
CCTTTAAGCTCGCTTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTATAATACGGTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTGAAGCTCCGCTCTT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTTGACGAAGGCTATC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCTGTGCTGCTAT	ref_3416_fdr	7	2	12	2	6	3	4	7	7	8
TCAGAGTTGCCGGCCT	ref_3416_fdr	56	39	93	57	25	65	45	57	51	72
CAAGAGAATGCGCGCG	ref_3416_fdr	175	68	211	185	76	207	70	160	84	141
GTAATGCTTTATGCTC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGGGGTATCAGCA	ref_3416_fdr	39	21	55	49	16	39	12	41	23	30
CTGAGTTAGATTTTCC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTCTAATTGGAAG	ref_3416_fdr	2	0	2	0	3	1	1	0	1	3
AGACTTGCCGGATCCT	ref_3416_fdr	25	23	24	22	13	14	8	24	11	19
AGCCAGATATCTGTAG	ref_3416_fdr	129	102	177	131	100	145	91	135	85	109
GATTGGTATCATTATA	ref_3416_fdr	43	20	64	38	20	54	19	43	29	25
ACTATGATCGGAAATT	ref_3416_fdr	15	11	35	13	7	21	17	22	11	19
ATAGGCACTACTTACT	ref_3416_fdr	24	10	21	26	13	19	17	23	12	30
ATAGCTGTCCTATGCC	ref_3416_fdr	41	31	49	43	30	56	18	47	25	38
AGTACATACCATTCAC	ref_3416_fdr	51	43	56	60	38	65	34	54	47	51
GTGGTTGAGCATATCT	ref_3416_fdr	36	23	53	40	25	29	26	25	22	42
ACGGCCGGATTGGAGG	ref_3416_fdr	7	11	17	11	6	5	13	9	10	7
TTCGCCCCCTCCCATT	ref_3416_fdr	45	16	44	36	21	24	21	47	23	40
GCAGAGTTTGGCATTG	ref_3416_fdr	310	177	336	327	198	240	212	300	209	228
CTGCACGCGAATCTTT	ref_3416_fdr	41	24	64	47	25	43	26	40	30	30
CGCTTGTCTATCTGAT	ref_3416_fdr	18	23	35	27	15	21	21	23	18	13
GCATCGTCTTGCATCG	ref_3416_fdr	17	8	5	21	14	9	6	18	8	14
CTTTCTGTCATCTTGA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
AGCCAAGGGGTGACTT	ref_3416_fdr	23	16	26	17	24	27	14	31	21	25
TATTCCTGATTAGCGT	ref_3416_fdr	24	10	25	27	16	25	12	17	13	26
TCCCATTCGGGCATGA	ref_3416_fdr	21	14	27	22	21	22	14	34	17	25
ACTTCTAGTTAATGGG	ref_3416_fdr	267	142	332	293	138	238	133	233	174	212
ACTTGGCGCACCCAAC	ref_3416_fdr	12	5	12	13	2	7	8	9	14	6
CACTGCATCTGATATC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TCGAGAAGCAATGTAA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGGCGCGTAATTC	ref_3416_fdr	5	1	11	11	12	5	6	3	7	11
TTCTACGCCACTTGCT	ref_3416_fdr	19	14	18	10	12	20	11	18	16	22
TTTTGATCAAAAGACG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TTATATTCCTTCGCTC	ref_3416_fdr	37	18	48	50	23	46	22	37	18	29
CTTTCGGGGTAGCGAG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTGCGTCCTCCCT	ref_3416_fdr	10	10	27	18	8	13	8	12	8	9
CATATTCGCAGTCGTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTCAGATTTCGA	ref_3416_fdr	23	15	46	21	11	40	18	36	32	27
TGGTCCACTGCCCTGT	ref_3416_fdr	40	27	38	30	18	34	24	38	22	30
TGCGACCATTGCACAG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGAATTGCCGCCT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTTACACTCACT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GGATGGTCTGGGGTCG	ref_3416_fdr	271	174	391	316	176	292	183	299	187	270
TATCCTAGCCAAGGAA	ref_3416_fdr	186	125	236	189	108	173	107	154	127	134
TTTACGATCAGTTGTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CGAATGGTTCACCCAC	ref_3416_fdr	45	38	54	57	27	50	33	70	28	47
TTGGTGCCTGTTAATG	ref_3416_fdr	89	79	119	115	54	73	67	92	70	86
TCTAGTACGGATACCC	ref_3416_fdr	4	3	10	7	1	1	4	6	10	7
CTACCGGCCACTGCCC	ref_3416_fdr	66	37	72	54	52	47	41	73	37	55
TTGTGCCGTTGGAAGC	ref_3416_fdr	41	29	31	43	34	32	36	23	22	38
CAGGTGTTGTTTGGCG	ref_3416_fdr	25	29	46	32	33	31	31	22	30	21
TTATGCACGAATCACG	ref_3416_fdr	55	36	82	78	36	49	31	63	28	51
CCCGCTCGGAACAAAG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GACGGCAACTGGTTCG	ref_3416_fdr	56	59	58	54	45	47	64	46	67	39
ATCCTTGTGCGTTCTA	ref_3416_fdr	108	61	83	79	46	67	54	72	71	82
TGCTATACGCCTGGTT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTGGACTATTTTA	ref_3416_fdr	7	4	9	12	3	7	10	4	7	8
ATTTATTATTTGGGTC	ref_3416_fdr	74	30	76	89	38	84	31	87	55	59
CCTTAACACCAGAAGT	ref_3416_fdr	11	12	13	16	6	6	2	13	8	13
ACACTGCCCGCGACTC	ref_3416_fdr	6	6	8	3	6	4	8	5	2	5
GGAACTCTTAGTCATA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GATGTCGGTATGGTTG	ref_3416_fdr	68	43	96	83	34	90	54	65	50	67
ACTTGTAGTATAGTGT	ref_3416_fdr	60	52	72	77	49	71	46	52	54	56
GGTCAGTGTTGGGTGC	ref_3416_fdr	88	59	99	82	45	95	61	83	47	74
AAATAGTCGTGAACTT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTTACTCCTTTT	ref_3416_fdr	77	38	72	60	33	54	33	57	40	54
CCACACTAGGAGCTTC	ref_3416_fdr	59	48	95	63	41	41	49	62	44	53
CGATGGGCGCTATACG	ref_3416_fdr	10	25	20	17	32	17	23	17	39	16
TGTGGTCTTGTGCAGC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
AAATCTGGATACTTTG	ref_3416_fdr	9	5	18	12	7	11	9	11	4	6
CACGTTTCAATAGCGG	ref_3416_fdr	57	37	66	59	35	72	41	60	42	52
TGGCCGTGCTCTGTAC	ref_3416_fdr	38	11	33	29	12	28	14	27	17	28
CTCTGATGATATAGTT	ref_3416_fdr	55	39	71	80	42	54	51	71	42	40
TTCCTTCATGTTACGC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CGGACTGAGTTTCACT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TATCACATCGTAACGT	ref_3416_fdr	60	32	84	66	40	61	36	73	33	49
CGGAATGAAACCGGCT	ref_3416_fdr	4	7	20	8	9	20	3	16	6	11
GTTATGAATGACCCGC	ref_3416_fdr	54	46	79	70	40	69	44	74	52	72
AGTGCTGGCAAATCAG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTCAGAGTAAGTGCTG	ref_3416_fdr	21	14	20	18	4	16	9	12	8	12
TCGTCCCCAGTAATAG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CGAATTTGCTCTGTAC	ref_3416_fdr	51	25	60	62	22	47	29	65	29	45
AACTTCTCCGCGTTTA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTAGTGCGGTCTTATT	ref_3416_fdr	62	47	70	49	32	40	39	59	55	40
ATTTGCGCACCTATCT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CCTACTTAGAGAGCGA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGCAGGTTTCTAGTGT	ref_3416_fdr	19	10	29	30	18	17	20	16	16	15
TTGAATCACGTGGCGA	ref_3416_fdr	52	24	62	34	42	35	35	32	32	42
CCTTGGATGAGCTTCG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCTATTGTAATAT	ref_3416_fdr	76	48	92	95	55	77	52	96	57	82
TAGACCATTTAAGCCA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CCATGATCGTGGATTC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCCGTGCGGGTGT	ref_3416_fdr	45	29	60	59	24	55	33	35	26	45
TGTTGATGACTTAGGC	ref_3416_fdr	13	9	16	23	6	20	6	16	11	18
AAAACGAATTCAACGT	ref_3416_fdr	90	43	130	117	64	83	47	99	48	79
CCTTTGCACTCTTAGT	ref_3416_fdr	42	22	47	23	30	21	26	43	22	22
GAGACCTCGTACCTTA	ref_3416_fdr	120	51	138	113	56	82	52	98	72	97
GTGCGAATTTCTATTG	ref_3416_fdr	36	28	40	32	31	37	17	26	24	32
CTACCATGAAATGTAC	ref_3416_fdr	19	26	33	30	18	30	32	21	18	22
TTCTTTGCGTCTCGAT	ref_3416_fdr	11	5	11	15	7	16	7	15	8	17
GTAGGCGGAATATAGT	ref_3416_fdr	44	47	79	67	40	57	38	56	50	51
ATCTAGATTTGATCTG	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCTCCTCACCCAT	ref_3416_fdr	38	26	73	67	37	53	31	61	37	44
GGTAGCGGGCACGATT	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CTAACTATGGGCTTTC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTCGCGGGTGGCT	ref_3416_fdr	20	16	30	35	20	22	20	31	22	21
TTTACGATCAATTGTG	ref_3416_fdr	66	40	81	54	42	53	40	65	52	77
GAGGATAGGATACGTC	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTCCTGTATGTA	ref_3416_fdr	0	0	0	0	0	0	0	0	0	0
CAGAGCGCGCACTAAC	ref_3416_fdr	96	65	131	112	54	95	67	102	69	94
GTTACTTTAAACCTAG	ref_3416_fdr	68	50	88	87	45	86	64	81	46	67
TCTAAGTCTTTACATT	ref_3331_fdr	43	23	38	27	24	27	44	37	34	32
ACGCGACAGGTGGCCA	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTTGATCCATTGT	ref_3331_fdr	236	195	261	249	217	215	211	230	189	214
TCATAAGAACGCCACT	ref_3331_fdr	30	22	31	29	27	18	22	26	21	19
GCTAAAGGCCCTTACT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
AACATGTATGAACTGC	ref_3331_fdr	38	29	51	36	26	35	47	44	42	39
TTTAATTTATCATTAG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTCATCTCGTAGT	ref_3331_fdr	55	29	36	39	40	45	37	39	27	29
ATGTCCTAACAGATTT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTTTACTCTTGTT	ref_3331_fdr	58	35	55	68	39	50	52	41	38	45
GAGCCCCCACGGGGGA	ref_3331_fdr	8	19	21	15	19	16	12	16	13	19
AGTACCGTGAACAATC	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTGAAATATATTCCCA	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTGAACCAGGGGAGCA	ref_3331_fdr	55	54	59	49	31	44	44	49	39	45
TCGGATTCAAACCTCA	ref_3331_fdr	25	27	35	50	18	43	29	26	29	33
AGATCACTACACACCC	ref_3331_fdr	103	108	146	135	92	120	123	110	114	113
TCAGCACTTGAGTCAT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAAAGTGCGTTGG	ref_3331_fdr	34	23	38	24	45	32	34	33	24	27
CTCGGTACGATCCCTT	ref_3331_fdr	86	56	100	93	54	78	55	91	67	66
TGCTGTGGTCAGTTTA	ref_3331_fdr	26	29	42	43	35	27	35	41	31	32
AATAGTGTGCTTATCG	ref_3331_fdr	18	22	33	23	19	20	13	19	14	11
TGTTATTTACCACTGT	ref_3331_fdr	15	8	11	13	3	10	6	12	9	6
CACCCGTGGCTCTGTG	ref_3331_fdr	64	53	75	83	46	64	65	73	57	49
CGCCAGTTACTTTTAT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCCTCCGCAACCT	ref_3331_fdr	54	28	48	34	30	42	36	45	34	36
AGGGGGAGTTACGTGT	ref_3331_fdr	20	16	19	19	9	18	7	15	19	11
GTGTCGCTCGTACGAG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTCACATTACCTGATA	ref_3331_fdr	56	90	62	74	93	60	90	57	98	41
TTCAACCTTTCTGGCG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGTCGACGACTGT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
GAAGATCCAAGTTTAC	ref_3331_fdr	102	69	105	97	69	76	65	101	82	68
TGAGTAATTGCCTAGC	ref_3331_fdr	37	22	30	34	21	22	18	23	21	21
CTTCCTTCGGGTCGTG	ref_3331_fdr	59	39	61	62	46	65	42	61	36	53
ATTTTTTCGCGCGAGT	ref_3331_fdr	0	2	3	4	4	0	6	3	0	1
TGGCCTCACAGGCATG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCCTCTCACAGGT	ref_3331_fdr	29	25	43	47	31	26	37	29	18	30
GTGTCTTAGGCACTCG	ref_3331_fdr	34	21	40	33	34	40	34	27	48	30
CGTCTGGTTTAGTATC	ref_3331_fdr	51	52	88	72	56	59	48	54	68	62
TGTTCGGGTTTTCAGA	ref_3331_fdr	96	76	127	103	93	103	83	88	83	89
AGAACAGAGCACAGCG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
AGGTAATTGCACCGAT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
GCAAATCAAGTCTCCC	ref_3331_fdr	1	2	3	1	1	0	3	0	0	1
TCCACCGCGCTGAGCG	ref_3331_fdr	24	9	26	24	6	24	22	16	13	10
GAGCACTAAAATGTAC	ref_3331_fdr	1	0	0	0	0	0	0	0	0	1
TAGGCTTTGACGTATC	ref_3331_fdr	140	112	191	130	107	139	117	129	122	127
ACAGTGCCGCCATCGG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
AGACTTATTGTCCCTT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
AGGCCATTCGCCACGA	ref_3331_fdr	94	58	112	58	59	70	77	56	90	78
CAGGTCGAAGAAACGG	ref_3331_fdr	47	43	76	57	50	71	51	64	42	45
TCATCAGCGTGAGCTC	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTTTTATAAGCGC	ref_3331_fdr	21	11	37	12	24	22	15	15	20	19
CGTTTTCTGTTGTGGG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGGTATTCACAAT	ref_3331_fdr	11	10	17	12	7	7	7	16	13	12
CAACTATTAAATAAAA	ref_3331_fdr	26	27	31	26	16	30	28	31	26	32
GCCGTGCTACCGATTG	ref_3331_fdr	2	6	1	5	4	1	3	6	7	0
TTTATGGGACTTCAAA	ref_3331_fdr	26	17	34	26	9	22	22	34	27	20
TTATTGCTAAGAACGT	ref_3331_fdr	15	19	27	23	14	24	20	19	14	18
CTGGAGCGTATCTCTA	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TAGATGCAAAATTTTC	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCAAATGTGTTGT	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGTACGCCAGGAC	ref_3331_fdr	11	21	25	15	11	21	14	14	19	13
TTTTTTATTCGCCACG	ref_3331_fdr	119	118	156	131	78	125	122	87	114	107
CCGCTCGCACAGTCTC	ref_3331_fdr	42	31	34	41	22	41	32	29	38	31
GTGGTAAATACGCTTT	ref_3331_fdr	30	20	23	24	13	27	17	13	22	13
GGTATTGGAACCGCCA	ref_3331_fdr	47	38	50	51	42	47	41	38	33	47
GACTCCAGTTATCGGA	ref_3331_fdr	40	43	45	41	37	31	26	31	37	43
ATCCTGGTCTATGTGA	ref_3331_fdr	40	29	38	27	28	33	43	19	34	27
CCGATCTTCCGCTACG	ref_3331_fdr	38	19	35	32	37	25	29	28	33	22
TGAATTGCTAACGGTG	ref_3331_fdr	99	71	99	82	73	85	86	103	76	85
CCAGGGCAGGTATTTA	ref_3331_fdr	30	34	38	28	32	30	32	39	34	35
TCCGTGTGGTTTTAGC	ref_3331_fdr	59	49	61	55	50	58	46	57	54	51
GGTAACTGCTCCGGGA	ref_3331_fdr	102	84	143	118	91	98	95	122	102	110
CTTGGCGTGATAACGG	ref_3331_fdr	67	54	67	63	48	54	54	53	58	46
CCCTTTAGTCCCTGTA	ref_3331_fdr	14	54	25	16	58	20	65	12	60	20
TGCAGATTAGGCAAAC	ref_3331_fdr	16	13	37	23	27	22	28	13	14	19
CCTTCCTGTATATTCA	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
ATGGATACCTTATCAA	ref_3331_fdr	60	58	84	72	55	71	53	61	50	48
AAATCTTAAGTCGTGG	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
TCTGATGACTCTCGGC	ref_3331_fdr	12	4	10	16	10	12	7	8	8	16
GATGCTTACAGGAATA	ref_3331_fdr	46	34	42	43	34	44	30	30	23	31
CTTACCCCGTGTGCAT	ref_3331_fdr	5	8	10	11	5	4	3	5	8	7
TTGGCTGTCGTCGATA	ref_3331_fdr	65	57	65	56	44	97	57	55	54	52
CTACGGTCCGTGTCCC	ref_3331_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGGAGTTACTAAA	ref_3331_fdr	71	60	89	87	84	57	71	74	68	55
AACCTCCATATTGGTG	ref_3331_fdr	6	14	17	17	9	14	8	6	7	16
GTGTAAGGGAATTAGT	ref_3331_fdr	6	6	7	6	9	6	6	4	11	7
GTCACACCTTTTCAGA	ref_5198_upstream	6	7	5	6	9	1	3	3	13	11
ACCTGTACAACCGTGT	ref_5198_upstream	31	191	33	29	165	25	172	24	176	26
ACAGGGGATTCTATGA	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
CTACGCCTCCAAGTGC	ref_5198_upstream	2	12	1	0	10	3	8	1	11	1
AGGCTACCGCCGCCAG	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGTATGCTACATT	ref_5198_upstream	17	44	26	20	52	13	52	29	46	21
GTAACACTGATAGAAT	ref_5198_upstream	5	4	7	3	8	0	3	0	7	3
CTAGTATCTGCGAATA	ref_5198_upstream	33	96	37	33	123	36	110	37	99	30
TTAAGGCTCCCCGATC	ref_5198_upstream	1	8	0	1	1	0	8	0	7	3
GAGCTTCATGCGGTAC	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTTAATAAGTGG	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
CTAACATGGTGACAGT	ref_5198_upstream	10	20	13	11	24	17	17	13	15	8
TTGTATATACTATCTT	ref_5198_upstream	2	2	2	4	8	2	5	2	8	5
AGGCCCTTTTAGCCCT	ref_5198_upstream	9	13	12	10	10	19	14	4	14	8
TAGGTTAAAGTACGGG	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
CGCGACACACCCTACT	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
ATACGAATTTTAAGGG	ref_5198_upstream	21	45	32	32	44	34	49	26	60	19
TTCCCGCTTCAGTCCT	ref_5198_upstream	28	29	29	33	23	21	27	16	28	16
CCATCGCGCGGTTATA	ref_5198_upstream	3	11	8	4	8	6	11	3	10	3
TGCACCTTCACCGTTA	ref_5198_upstream	7	4	4	4	7	0	2	7	7	0
ATATGGGGGAAGTCGG	ref_5198_upstream	48	73	49	53	97	43	97	38	95	42
CATTCCCCATCCCTAG	ref_5198_upstream	16	34	13	11	54	14	50	18	41	17
GCTCACTGGTTTGCCT	ref_5198_upstream	49	71	48	37	92	32	86	27	94	41
TCGTATCAGACGATAT	ref_5198_upstream	16	30	22	17	24	15	41	10	35	12
CGTGGCTTGGTACTGC	ref_5198_upstream	3	4	1	4	5	2	4	1	3	0
CACGTTATGTTAGCAT	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCGGTTATGGGTT	ref_5198_upstream	5	13	3	5	13	9	14	5	16	5
AGGTTGCTCCCCACGA	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
TGACGTCCTGCAATCG	ref_5198_upstream	50	95	54	39	88	48	80	39	102	42
CTGCGCCCATTGATAT	ref_5198_upstream	122	297	187	151	261	104	291	101	306	122
TCCATGTCGAGTCTGT	ref_5198_upstream	102	204	110	106	216	89	197	81	223	84
TAATCAGCATGTGACC	ref_5198_upstream	47	86	44	27	86	42	79	35	84	38
ATATTCGGGCTCAGGG	ref_5198_upstream	3	5	4	2	7	4	8	1	5	3
TGGGTAACTATACGGC	ref_5198_upstream	239	537	320	224	495	232	524	230	581	211
GTCCTATCATCAGCGA	ref_5198_upstream	90	101	78	79	153	74	128	69	137	54
TGGCTTTTTCCAGTCG	ref_5198_upstream	8	34	11	13	32	10	30	11	43	9
TAATAGGGTGTACAAA	ref_5198_upstream	4	3	0	3	8	1	4	1	5	0
CCAACCCTCTCAAATG	ref_5198_upstream	22	56	21	15	53	18	56	18	52	8
CGACCTGGTCTTAGAA	ref_5198_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCAGGGCACTGGC	ref_5198_upstream	30	50	26	22	55	23	57	32	54	23
ACATTTGGTTCTCTGA	ref_5198_upstream	66	98	60	41	104	41	91	53	103	44
TTATGAGAATCTGTTC	ref_5198_upstream	13	22	8	4	23	7	17	2	24	9
GCTTTCGCATAAAATG	ref_5198_upstream	42	97	52	44	84	36	90	38	85	50
TCATGGACATTGTGAT	ref_5198_upstream	11	16	6	6	13	9	25	9	23	8
TAGCAACGCAGTCCAG	alt_862_upstream	62	40	55	48	41	43	24	49	41	38
ATTTCGAATATTAGAT	alt_862_upstream	35	14	32	22	20	19	22	44	23	31
ACTCGTTTTTTGACCA	alt_862_upstream	11	10	13	21	3	17	14	12	9	13
ATACAGTGTCAGATTG	alt_862_upstream	38	25	49	54	29	39	34	41	33	33
TATCATCTACTGGATA	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCGAATTAGGAC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCCGTTCGTTGCA	alt_862_upstream	60	42	67	81	35	60	42	48	60	56
TGTCGCACTATGAGGA	alt_862_upstream	25	14	18	9	12	10	11	20	16	19
ATGGTTAATCCTCACC	alt_862_upstream	16	11	18	18	10	14	6	16	16	18
CTAGCTTTGTAAGACT	alt_862_upstream	37	27	40	23	34	25	23	37	25	20
GATTCACGCTGCCCTT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAATGCTTGTATT	alt_862_upstream	45	18	50	50	42	38	26	37	24	36
GGGGATCCGACCTTCA	alt_862_upstream	265	190	328	299	172	260	204	259	197	215
TTTTACTTTCCTTGTT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TGTACTATGACAGGTC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTATCTTTATTGA	alt_862_upstream	75	47	69	63	37	73	63	54	71	61
TTACCGGCGATGTACG	alt_862_upstream	25	31	32	18	53	21	53	20	60	25
GACCTAATCTGACGTG	alt_862_upstream	236	168	260	194	172	161	167	209	150	207
CTATGGTCTTTGCTAG	alt_862_upstream	7	4	16	6	12	11	13	9	13	7
TTCGTTCTTTAAAACC	alt_862_upstream	1	0	0	0	1	1	0	0	0	1
TTTACTTCGAACGCGA	alt_862_upstream	81	63	96	86	62	78	49	60	68	66
AACCATGCTAGCTGCT	alt_862_upstream	8	14	17	17	8	12	9	8	7	12
TTTTCTAAAATGGCGA	alt_862_upstream	59	28	62	50	33	72	24	56	20	43
TTATAAAGAAATTTTG	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTTGTCCTTTAGG	alt_862_upstream	24	17	30	26	25	15	18	25	22	19
TTTCTAACCGAGTCCG	alt_862_upstream	17	16	35	26	20	20	23	27	19	28
TAGATATGGAAAGGGG	alt_862_upstream	36	30	44	30	20	25	18	34	15	19
AAACTGTAACTGCCGC	alt_862_upstream	80	50	71	84	56	65	67	53	60	64
CGGTTGGAGTATCAAG	alt_862_upstream	88	58	115	94	67	101	68	90	65	80
TGCTATGTAATCATTT	alt_862_upstream	33	18	41	25	17	28	29	24	22	27
AGTCCACGAAGTTATA	alt_862_upstream	31	23	25	32	20	21	18	23	26	26
CCGGCCTGAAATTACC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CGCAGCCTCATCGAGT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTGGCTTTTGTA	alt_862_upstream	45	22	47	52	36	35	39	34	33	44
ACATCGAGCGCTGGAC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TCCATTCTTTCCACTA	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
GTCTAATATTGGCTTG	alt_862_upstream	5	1	9	3	1	5	1	4	2	1
TATGCGACATGGTGGT	alt_862_upstream	10	7	8	9	5	4	7	4	3	6
GTGCTAGTATCCTGGC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGCTTGTGTACAC	alt_862_upstream	109	83	126	93	82	89	97	94	64	87
GAACACCGTATCGTTG	alt_862_upstream	84	59	102	92	64	97	58	96	94	95
CGAGGTTCATTAGCCC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
GATTCCGGCCAGTTGC	alt_862_upstream	19	15	15	24	11	9	10	18	21	22
AATTAAAGGACCACGT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTGTTCTTATGTC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTCGGTCCAGCAT	alt_862_upstream	191	134	222	165	138	152	144	159	126	150
TGGGCCCTAATTCCGC	alt_862_upstream	12	7	21	18	7	16	8	9	15	19
TTTGTTATGTTATGAT	alt_862_upstream	29	17	32	14	14	12	12	20	23	18
TTCTAAGTGTGTCTCC	alt_862_upstream	6	6	2	7	5	8	6	6	3	8
GGTACATATCGTTCCT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCAGATCCAGAAG	alt_862_upstream	14	23	33	18	28	28	22	20	20	28
CGCGTCCGTTCTTGGT	ref_862_upstream	50	44	57	36	44	33	47	35	40	56
CCGTCGGATGGAAAGG	alt_862_upstream	59	49	76	52	47	48	63	57	47	42
GTCCATTTGCCTGGGT	alt_862_upstream	0	0	0	1	0	1	1	0	0	0
CGTATGAGTCTGTAAC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
AACTTCGTTTGTGTCT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGGTGCCCTATCT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGAGGCCGGACCG	alt_862_upstream	39	25	47	49	41	37	24	41	31	48
GTCCGAAGTGCGTCAA	alt_862_upstream	29	11	24	16	10	15	18	16	15	9
GTAGGTCACATACTTC	alt_862_upstream	19	13	18	9	4	15	10	20	15	7
ACGGTCACAAAGTAGG	alt_862_upstream	15	30	28	16	32	25	44	11	47	21
TACGTCCTGTTCTAAC	alt_862_upstream	43	27	44	35	24	30	26	46	25	32
ATTTTTATTCTAGCGT	alt_862_upstream	2	4	4	6	3	6	9	6	5	4
AGTAAACACTCTTCGT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTTATGTTATGGG	alt_862_upstream	2	0	6	2	0	3	3	6	1	2
AACAGCAGATTTCATC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CCATCACCATCTGCAG	alt_862_upstream	26	25	44	27	44	32	41	27	31	32
TCCGTGAGTAAAATTA	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
GGGAGGGAATTGATGC	alt_862_upstream	59	41	77	61	45	42	49	58	22	49
GTGACCAAATTTGCGA	alt_862_upstream	18	24	39	30	21	26	25	18	22	31
AGCGGTACTGCCTCAG	alt_862_upstream	131	105	175	123	120	121	114	98	114	133
TCATTGTTATTTTCTC	alt_862_upstream	9	9	12	15	6	11	6	12	16	12
CATAAGACGTGGCTGT	alt_862_upstream	56	28	57	43	40	67	42	46	40	47
CTTCGATATATTAGTA	alt_862_upstream	34	25	44	35	21	30	36	25	24	28
CTCTCTGCTTTTGGTC	alt_862_upstream	206	166	259	198	140	220	164	175	237	185
GCACTTCCATAAACAT	alt_862_upstream	95	73	134	124	74	111	97	101	78	93
ACAGAGACCGTTTAAA	alt_862_upstream	14	5	12	11	11	11	10	15	9	5
GGTACCAGTAGTGGGC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCTCTAGATGGGC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TCATAGTCAGTGTATA	alt_862_upstream	135	144	137	142	199	131	189	125	191	104
ATAACTTTTCTTTGTC	alt_862_upstream	159	76	155	146	76	140	95	140	118	132
TGCGAGCGTGAGGGTG	alt_862_upstream	11	9	13	7	3	5	7	4	8	4
CTAAAATCCGTAATTA	alt_862_upstream	7	11	13	16	13	12	14	16	8	9
TAGTTAAGGCACACTG	alt_862_upstream	43	25	39	40	19	40	20	30	24	33
GTCTCTGATAAGCCGC	alt_862_upstream	99	71	104	61	72	59	72	66	84	69
CTAACGCTAATCGTTT	alt_862_upstream	34	21	39	39	30	30	25	20	12	19
ATGGGCGCTTCGTTAA	alt_862_upstream	5	4	5	9	4	6	2	9	2	3
GATTTTATTTTCAGTG	alt_862_upstream	64	44	73	52	37	54	47	41	52	53
GTCAATCAACCCTAGG	alt_862_upstream	53	50	93	72	43	83	72	64	65	71
CTACTTCCGTGCATTA	alt_862_upstream	38	38	50	46	35	37	46	45	30	49
TGTCCGACCCTTTGGC	alt_862_upstream	85	70	92	89	54	94	61	79	63	93
TATTTCACGACCCCAA	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATTTCGCGACTG	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
GGGTACGCCTTTCATC	alt_862_upstream	18	5	12	5	4	7	3	6	3	10
TTCTTGCTCCCCTAGC	alt_862_upstream	76	85	69	43	73	51	79	38	97	48
GAATTTACACCAATTC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGGTAGTAGTTCT	alt_862_upstream	10	5	9	7	5	8	4	7	5	6
TCCGAGATTAAGCCAT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGCCTATTTATCC	alt_862_upstream	75	93	118	105	94	78	110	114	121	86
TCTCTGAATTAATCAA	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTGTACGATAAAG	alt_862_upstream	29	16	32	16	13	29	17	26	10	22
CTTCTACGACGTAGGC	alt_862_upstream	83	60	106	84	47	89	54	87	82	76
GTCTTAGGTTGTATGT	alt_862_upstream	52	39	69	58	41	48	46	57	74	46
GCCATTCCTCACGCGG	alt_862_upstream	22	21	26	25	23	26	23	16	23	24
TTCCGGTTCCTCCCCG	ref_862_upstream	6	9	7	4	16	1	12	9	17	8
TCTTATTTACGTCCTC	alt_862_upstream	92	66	102	91	52	103	68	91	73	88
GCTATCTCTTATAACT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCTAGGACGTATC	alt_862_upstream	33	20	41	43	22	42	29	45	35	39
TGCATACTGGTGCTTT	alt_862_upstream	18	17	17	27	17	22	15	26	18	12
TGCTTAGAAGATACGT	alt_862_upstream	15	11	11	21	24	19	20	15	16	8
ATCCGTGCTTTAATCT	alt_862_upstream	57	42	69	75	51	64	42	60	52	43
TATCCAGGTAGTGGCT	alt_862_upstream	62	58	82	63	64	65	79	72	40	64
TCGTAGCTCCTTTCGG	alt_862_upstream	8	10	11	12	12	8	8	5	3	11
TCGAGAGCTGTCGTAG	alt_862_upstream	40	25	55	34	41	33	37	42	27	17
GGACTTCAGAACGTGA	alt_862_upstream	12	6	14	6	7	18	14	8	13	11
GAGATCGTCATTCCAG	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
AATCTCCTGTAATCTC	alt_862_upstream	26	14	40	23	22	33	21	22	21	28
CCAGACACTGGATGAT	alt_862_upstream	23	21	26	22	14	24	19	19	20	13
ACTGCAACAATCTGAC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
AAGGACGGTTTTTTAT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TACCGTTTGTCTCTCG	alt_862_upstream	21	26	28	32	18	22	12	27	21	12
GGGAGGGTGCGATCTA	alt_862_upstream	16	10	13	7	12	12	10	9	10	10
CCAGAATTCGTCTAGT	alt_862_upstream	67	81	74	78	57	61	62	90	81	61
CGTCGCCAACCCATTT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
GCACGCTGACCCTGTC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TACCACGCGAAAGACG	alt_862_upstream	1	4	2	3	4	1	2	4	0	3
TTTCCCCTTAGACAAT	ref_862_upstream	147	239	208	182	264	171	241	162	276	142
GAAGAATGGACAGTGG	alt_862_upstream	26	34	34	31	26	35	27	28	32	35
TGCGATAGCCACGAAG	alt_862_upstream	53	32	68	42	45	39	37	50	33	50
GCGTGCGTTACTGGGT	alt_862_upstream	3	5	7	13	13	8	7	6	15	5
TCGGATACTTATGATT	alt_862_upstream	80	64	96	91	70	86	67	90	66	74
CTTCGACTCAAAACTT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
ATCCACCTTGCCAGCT	alt_862_upstream	5	1	7	3	5	8	3	5	0	1
CCGCGAGTATTTAGGA	alt_862_upstream	488	404	619	540	398	448	420	482	446	421
AGGTATAGAAGCCGAT	alt_862_upstream	183	142	255	204	144	171	151	190	120	166
CTCATGCGTGCTGTAA	ref_862_upstream	122	136	152	127	132	128	120	103	136	93
CGCTCCTATTGAAATG	alt_862_upstream	15	12	18	16	13	16	13	15	13	17
ACGTTCAACTGGAGTC	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGTAAAGCCATGA	alt_862_upstream	70	43	69	54	36	50	35	54	60	49
GCTTACGGATTTGCAG	alt_862_upstream	33	25	35	29	17	26	35	29	30	30
CGCTATAATTTACTGA	alt_862_upstream	129	70	174	144	97	151	111	150	128	118
GCATACTCTGGCCGTT	alt_862_upstream	20	25	33	26	13	18	17	21	23	27
TCAACCCCGTTAACAG	ref_862_upstream	39	28	40	34	40	44	37	28	33	29
GCCAATTGCTGCGTGG	alt_862_upstream	42	26	54	29	24	28	33	38	23	33
GAGCTCTTGTGGGAGT	alt_862_upstream	36	27	35	31	19	23	15	28	23	27
CCTCAGCAGTTTAGTC	alt_862_upstream	121	78	121	111	98	98	103	95	109	93
GACTCATCGCACGTTG	alt_862_upstream	48	35	84	56	44	50	37	42	34	53
AGCTTTTGAGGAGTTA	alt_862_upstream	227	162	245	204	134	212	159	196	196	164
AGATTCGACCTCGTAA	alt_862_upstream	81	64	98	80	50	73	53	67	55	46
GAATGTTTAGACATCT	ref_862_upstream	385	418	416	405	347	366	398	370	415	358
ACTTGTAGCGTTAGGG	alt_862_upstream	50	48	49	52	33	39	41	40	38	37
GTTCCGTGTTGCTATT	alt_862_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTTAGTTCAGATT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CTTCATCCAACTATTG	alt_2009_upstream	6	22	11	5	12	8	16	2	17	7
AATCGACTGCTTCGCT	alt_2009_upstream	7	26	17	4	27	7	26	4	33	3
AAAAGCTAGTTGTTAA	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTCAACGTATGCA	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
TCTTACGTTCCTAGAC	alt_2009_upstream	4	27	7	6	31	2	41	4	39	3
CAACCCTTCGATCATC	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTGGAGATTAGAT	alt_2009_upstream	2	11	6	4	19	3	21	6	27	3
AACTTTTGAAATAGGC	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
ATATATCTCGTTCTGC	alt_2009_upstream	23	30	24	12	34	29	38	13	45	21
TTTGGACAATACGTTT	alt_2009_upstream	68	137	78	60	145	70	178	52	174	60
GTTTCAAGTTTGGTTT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GTTATGACTAATTTTG	alt_2009_upstream	52	130	53	47	131	58	136	64	132	64
ATGAACATGTAGCCTC	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
TGATTATCCGTTCCTT	alt_2009_upstream	23	35	35	23	32	16	36	22	41	20
ATTTCCTTTTTTTCTT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGTACCCAGTTTT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCCTAGAGTGTTA	alt_2009_upstream	11	22	12	15	17	14	23	4	26	9
AGGTTCGCTAATCTGC	alt_2009_upstream	6	13	5	19	10	8	17	10	14	6
GTACATTTCTTCCTTT	alt_2009_upstream	9	15	17	18	20	11	20	11	11	9
CACCCCCAGACAGGAA	alt_2009_upstream	17	32	10	5	43	16	36	11	36	9
GAAATAATTTGGTCTG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GTATGGTGTTTATATT	alt_2009_upstream	44	48	30	37	54	23	45	31	72	22
GGTTACGCCTAATCCA	alt_2009_upstream	1	3	2	0	2	1	2	1	3	1
CTACCAGTGATACACC	alt_2009_upstream	34	86	41	23	67	26	63	28	69	24
TTCTTACCCAGTGCAC	alt_2009_upstream	11	43	18	13	27	11	22	9	29	13
TATCTGTTTTAGTACT	alt_2009_upstream	61	153	96	68	202	70	186	53	209	53
GATTTCGACTTAGTAA	alt_2009_upstream	14	32	19	13	33	5	26	11	27	8
TGCGGAATCGTGCGCG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTTTTGTATGATA	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
TATCACAAATAGCTAT	alt_2009_upstream	24	33	25	19	32	23	45	21	53	13
AGAACTTCAATTCCTC	alt_2009_upstream	11	28	13	11	19	12	19	11	17	9
TAATGTACAGTGAATC	alt_2009_upstream	10	37	21	32	36	30	67	24	40	18
AGGGCTGAGTTTCAGG	alt_2009_upstream	7	11	14	8	11	5	8	5	13	5
GCTTCTGATTCCACCT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTTCCCTGCATCA	alt_2009_upstream	32	52	21	26	61	22	53	19	50	20
TTGAGGATTAGTCATT	alt_2009_upstream	36	80	57	36	88	48	93	35	83	39
CGCTTTTACTTCCCGA	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCCAATATCGCGA	alt_2009_upstream	6	13	19	8	22	8	14	8	15	5
CCCTAATTTTGTCAGT	alt_2009_upstream	3	12	2	2	10	6	10	2	6	1
CTCTCATCATTATCGA	alt_2009_upstream	1	4	3	1	9	0	0	2	5	5
TCTTTTCGGACTGATT	alt_2009_upstream	4	14	4	6	8	4	12	7	12	2
AGGCGTCTCTCAAGCA	alt_2009_upstream	8	23	9	12	27	16	25	8	35	15
GCTTTCGCTTTGTGAC	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTAATGAGCCTGA	alt_2009_upstream	26	79	41	41	55	19	65	25	64	16
TCATGGTCATCTGTTT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTGTCTTATGTTG	alt_2009_upstream	13	20	4	12	8	10	12	5	9	6
TCCCAATTACGATTTT	alt_2009_upstream	7	22	17	5	30	12	30	1	29	13
ACACTCTTTGGGCTCG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GTCGAGTCACGCACGA	alt_2009_upstream	11	18	14	14	38	14	26	18	28	13
CAGGGGAAGACCATAG	alt_2009_upstream	20	43	24	22	33	15	31	17	40	18
GTTTCACATGACTTGG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
AAAGCCTAACACTTGT	alt_2009_upstream	77	190	93	70	229	90	194	83	217	68
TGTTACATGAACCGTC	alt_2009_upstream	3	5	11	3	6	6	8	3	7	5
GGACTTATTGACCAGT	alt_2009_upstream	0	0	0	0	0	0	1	0	0	0
GAGCCTAAGCTTGCAG	alt_2009_upstream	14	24	7	8	16	9	24	3	22	3
CGTGCTAACGTTACTG	alt_2009_upstream	1	4	5	4	9	5	8	2	11	1
AGCCGCTGAAGTGACT	alt_2009_upstream	17	50	27	22	53	17	65	14	42	19
GCAATAGCGGGCCACG	alt_2009_upstream	8	41	22	15	34	20	41	12	38	15
TTTGGCTCTGTTTTAG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCTTGCCTATTTA	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGAAGTACATCCA	alt_2009_upstream	9	36	18	14	25	6	40	11	39	16
GAGGCGTCACTGCGCG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTGCAAACTCGAC	alt_2009_upstream	1	0	0	0	2	1	1	1	7	2
GCCACGTTACTAAAAG	alt_2009_upstream	1	1	2	1	1	1	1	2	3	0
AAAATTTTGGTACTTA	alt_2009_upstream	64	170	84	60	182	66	179	84	197	76
AGGTGCATGATGATCT	alt_2009_upstream	9	41	26	21	41	23	36	12	46	16
GTGTTACTAGGTAGCA	alt_2009_upstream	26	49	26	29	48	23	50	16	70	18
CGTTTGAGTACGTTTT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
AATCTGTTTTAGTACT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATGCTAACACCT	alt_2009_upstream	10	19	11	10	20	9	27	6	21	8
GGCTTACTATCAAGCT	alt_2009_upstream	1	13	6	2	8	0	8	1	7	9
AGTAGTTGAAACGGAC	alt_2009_upstream	4	5	5	3	0	1	5	2	6	3
TTCAATCATGTTGCAG	alt_2009_upstream	38	91	23	55	113	47	91	47	106	41
ACGTTGGGCTATGTGC	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCGATTCTCTGGT	alt_2009_upstream	16	37	8	6	26	6	26	15	18	7
AAAGCCCTCCATCTCG	alt_2009_upstream	5	6	10	7	12	9	13	5	10	5
TTGTCTCTGCTTGAGT	alt_2009_upstream	20	25	8	14	37	11	37	16	42	9
TCATGGCAAGAAATTA	alt_2009_upstream	1	12	5	3	7	3	4	1	6	3
CAGCGATGCGATTACT	alt_2009_upstream	17	43	11	15	23	21	43	10	48	9
TCGGGGTTGTCTCGTC	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCCTATTCGTCGT	alt_2009_upstream	7	13	9	8	12	12	21	7	18	9
AATTAACCCAGACGCT	alt_2009_upstream	6	10	7	7	8	2	12	3	12	6
CAGGTAACGGGATCTA	alt_2009_upstream	15	49	19	15	31	16	41	11	47	15
CAATTCATTACTTTCA	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GGGGATGTATAAGTTG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGTGATATATTTT	alt_2009_upstream	1	5	4	1	0	1	5	3	3	0
TCAAGGTTACTCTTGG	alt_2009_upstream	13	16	8	7	21	7	12	5	12	7
TCGTAAACCCTCATTC	alt_2009_upstream	26	64	28	17	62	28	83	22	68	22
TATTGTTGGTGCTTGA	alt_2009_upstream	18	42	20	13	37	8	26	8	38	13
ATAGTTGTTTGGCAGA	alt_2009_upstream	14	32	22	10	23	19	38	12	41	13
AGTCTAATGCATTCAA	alt_2009_upstream	10	31	21	12	31	4	23	9	29	13
TTTAACTTTGTTCGCC	alt_2009_upstream	46	86	41	23	86	40	103	44	87	34
GGGCTGGCAATGCTTA	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
ATATTGACCTTTTTTT	alt_2009_upstream	15	15	13	14	16	10	13	5	11	9
AGTGTGAAAATTGTGC	alt_2009_upstream	5	11	8	7	24	9	16	6	20	9
GTTGTGCGTAGTCCTT	alt_2009_upstream	26	47	24	19	41	22	53	14	42	20
GGTGACACCTATGGAT	alt_2009_upstream	11	10	12	3	15	8	27	7	20	6
GATTAATTTATGTCGT	alt_2009_upstream	27	51	37	30	41	25	54	25	45	28
TGTTCGTATGACTGGA	alt_2009_upstream	34	54	35	27	71	30	83	29	71	32
ACTGACTTAAAGGGCT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GCATGCATATACCTAT	alt_2009_upstream	44	93	51	51	80	52	90	45	102	35
GGCCAATGTGCTTGCG	alt_2009_upstream	18	46	16	24	34	7	47	15	40	11
TTGTAGCCTTCTCTCC	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
AGTAAAGCAGCTGGCT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTCCCAGGGCAC	alt_2009_upstream	2	12	0	3	8	1	9	1	10	1
GTCAGGTGATCATTAT	alt_2009_upstream	1	1	3	2	4	1	2	2	1	2
GCTGTCTATGAAATAG	alt_2009_upstream	0	1	0	0	3	3	3	0	3	3
GCTAACCTACCGATTC	alt_2009_upstream	30	83	28	24	87	20	72	25	85	26
ATGCAGGTTCTCAACT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
TTAACCTCTTCTCAGA	alt_2009_upstream	11	36	18	26	37	25	27	18	37	12
CGCTGCGCCGGATTAC	alt_2009_upstream	3	8	3	2	7	1	11	6	2	5
TTGTTCCTCACCATAC	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GATAGGCCCCGTAGCG	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTCCTAGTCTACG	alt_2009_upstream	5	13	5	3	11	4	11	4	13	1
AAGGTTTTTCCGCTAT	alt_2009_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGCCCTCCCCACG	alt_2009_upstream	76	285	89	69	310	79	329	107	334	65
CTTTGTTCATAGATAC	alt_2572_negative	45	54	58	56	65	37	43	38	65	36
CTTCTGTCCTTCGCAG	alt_2572_negative	17	12	14	16	13	12	16	13	13	9
TTGTGCACGATCATAG	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
TGGCTCAATCAGCTCA	alt_2572_negative	82	87	114	101	87	70	88	99	92	55
GCACTGTCCGCCAAAT	alt_2572_negative	239	258	260	224	259	215	253	201	267	200
TCTTGCGGCCGTAGGA	alt_2572_negative	25	41	69	55	35	47	48	32	53	37
TACTGTGCCACGAACA	alt_2572_negative	51	65	66	61	44	63	59	49	72	47
CCAAACTTAGGAATGT	alt_2572_negative	8	12	11	9	14	7	5	10	5	8
GTTGCCATAAATAGTC	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
CGGGCACCACAGTATT	alt_2572_negative	26	26	27	39	40	28	23	37	41	23
AAAACGTCTGTTTGCC	alt_2572_negative	7	21	8	9	14	8	14	8	16	16
GGCCGGCAGGATGACG	alt_2572_negative	20	19	18	24	18	14	10	16	11	13
TGGAAGGACTCCCGGG	alt_2572_negative	17	17	19	29	21	22	20	22	27	18
CAGAGTGTTCGGTGAA	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GCACTATAGATACGCT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
CTTCTTTGGCTTTCTG	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
ACGTGGGAAACGATTA	alt_2572_negative	28	54	40	38	50	35	45	38	38	36
TCCGTGCAAATGGGTT	alt_2572_negative	69	79	92	91	67	86	93	56	101	85
CTTTTATACCATGCTC	alt_2572_negative	11	11	6	6	10	6	10	7	8	5
TCTTTAGCAGCTTGGA	alt_2572_negative	26	25	30	26	30	27	33	25	25	17
TTCCCTTAGTGATTTA	alt_2572_negative	232	218	248	202	203	229	230	204	233	192
TATGTACCGCACTCAC	alt_2572_negative	3	4	7	5	11	7	9	5	6	6
GGTTGGGCTTACTCTG	alt_2572_negative	10	16	9	4	14	10	21	8	13	5
TTTATGCCATGCGGTT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
CTATACGGCCATGAAC	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
ATCTGAGCTGATTTTA	alt_2572_negative	13	12	11	10	7	5	10	5	12	11
CCCGTTGATCGAGTCG	alt_2572_negative	17	23	14	23	19	11	20	16	29	10
GCACTGTCCGCAAAAT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
TGCACTTTAATACCGT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
CTTGGGAATTAACCTC	alt_2572_negative	15	6	16	19	14	13	10	14	17	13
CCCGTCCCTGCAGGTA	alt_2572_negative	29	23	32	16	27	26	30	27	28	22
AAAATCAACCCGTGTT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
CCACTGTTTTTGTGTA	alt_2572_negative	14	20	17	18	22	8	25	13	22	11
TAGCTTCTCGTCCTGA	alt_2572_negative	52	59	89	87	75	70	72	57	88	60
GATCTTATATCTTGGC	alt_2572_negative	7	6	3	6	5	4	4	4	3	6
GTTCTTGAGTCTGACT	alt_2572_negative	24	26	23	29	38	33	41	33	41	23
GTTTCAATGTACGATG	alt_2572_negative	31	53	38	43	34	50	39	50	40	40
GTCCGGCCTCTCGTGT	alt_2572_negative	65	99	85	77	140	61	131	62	122	63
TAACCTGGCAGCTCAC	alt_2572_negative	56	56	56	46	45	35	51	44	41	55
GGGGAGTTCCGGTTTA	alt_2572_negative	1	1	2	2	2	1	2	4	2	1
AAGTCTTGCGGCATAA	alt_2572_negative	163	211	213	173	184	177	194	157	199	167
CGGTCCCTGTAAGGTT	alt_2572_negative	78	85	117	80	97	72	88	71	95	84
GTCTGAGTGGTCTCCT	alt_2572_negative	10	10	16	6	10	6	11	11	14	9
GTCACCTCACATGTAC	alt_2572_negative	0	9	2	1	2	4	3	2	5	2
AGTCTCCTTGCCCGAA	alt_2572_negative	46	33	54	45	36	35	45	56	32	30
CTTTTATCATTTCCTC	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GCCAAACGGTGCGCCT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
TTTTGAAGGACCCGGG	alt_2572_negative	46	36	59	53	49	55	46	56	46	53
GACACGTGGACCCTAA	alt_2572_negative	31	25	37	38	31	32	47	28	27	39
TTTGACGTTCTTTGGC	alt_2572_negative	6	0	0	0	2	0	2	2	0	5
GTTATATAAGAACCCG	alt_2572_negative	44	54	81	61	80	66	76	57	74	39
AATCGAAACCTTTTCA	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GTTGGTATCCACGTAC	alt_2572_negative	4	6	6	3	4	3	8	7	8	10
TTGCTGTACTGGGGTA	alt_2572_negative	23	33	32	21	36	20	39	29	41	26
TTGTTCTTGGATTGGA	alt_2572_negative	15	14	16	14	14	12	18	6	11	6
CATCTGACATACCTGC	alt_2572_negative	25	26	18	18	24	11	32	28	31	20
AGCTGTGTAATAATGG	alt_2572_negative	33	22	44	39	31	39	26	35	30	27
CGTGGTTGGCGTGCGT	alt_2572_negative	26	19	27	13	26	22	22	17	12	23
ATACTCCTTAACCCAT	alt_2572_negative	31	41	40	32	41	26	25	23	29	24
CTTTCAGGCTTGGACC	alt_2572_negative	109	92	123	110	106	98	137	102	127	96
CGCTGAGGATTCGGCT	alt_2572_negative	29	45	43	28	33	20	48	20	37	21
TACTGATGCGGATATT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GGTTTTTAATCTATGT	alt_2572_negative	10	21	21	9	14	15	15	11	15	6
TTCGTTTGTTTGCCTT	alt_2572_negative	159	199	233	162	161	158	187	154	193	170
CGGTCCTCTGGTTAGT	alt_2572_negative	1	5	3	3	3	5	0	2	1	6
GGCAGAACGCCATCGT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
TACTTCCATTTAGAGT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
ACGGTGCGATTATCGG	alt_2572_negative	10	4	6	9	10	2	9	8	4	4
CTTGTGACGTACTAAC	alt_2572_negative	23	31	35	21	40	38	44	26	42	27
CTGTTATGGCATTAAA	alt_2572_negative	62	59	66	68	85	58	84	57	71	56
TGTTCCGTGTCCGTTG	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GCCTTTCAGCAATTTG	alt_2572_negative	44	54	58	50	53	36	71	43	63	51
TATTATGTCCGCGTTG	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GAGATTGCTTCAACTT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
CGCTACTCTTTTCCAT	alt_2572_negative	3	2	3	5	1	0	2	1	2	2
TTTTCTCAATTCATGG	alt_2572_negative	5	16	17	21	9	10	16	14	21	19
GTTCAACTGCTCTGAA	alt_2572_negative	22	26	42	35	34	30	38	37	40	29
ACGAATCCCCCTCCTA	alt_2572_negative	14	9	16	20	10	8	6	17	8	7
GCTGAATCCTCTCGTG	alt_2572_negative	8	12	20	10	7	6	11	10	7	9
GTGATTGCTTCAACTT	alt_2572_negative	83	93	74	70	98	52	84	76	104	85
CCTACAGCGTCCCGGC	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GGAGTTTTGCCGACGG	alt_2572_negative	10	10	20	8	15	11	25	7	9	5
ATGTCGGTCAAGGCAG	alt_2572_negative	42	51	46	37	37	43	29	40	37	43
GCTTTTCAAGTTTTCT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GCATAGCTTAAATTTT	alt_2572_negative	14	22	25	24	5	10	23	13	26	9
TTGTTAGTGCCTCTAG	alt_2572_negative	40	30	49	73	59	36	40	27	57	48
CGATGCTAATCAGCGA	alt_2572_negative	107	120	131	103	119	98	116	110	117	91
TCATTTCAGTCCCTCT	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
AAATGCCCAGGGTATC	alt_2572_negative	39	40	47	40	46	30	57	36	46	42
GTTGTTTGCAGAATAC	alt_2572_negative	9	12	18	19	15	14	21	12	12	11
ATTTGGTATTGCTTCG	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
TGGTACCGTAAGTTAA	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
CACCAGGTAACGGCAC	alt_2572_negative	13	7	9	5	3	7	8	5	4	6
TATGTTCTGGCGCGTC	alt_2572_negative	76	77	74	55	85	62	70	66	79	47
CTTGTATTATGCGGAC	alt_2572_negative	34	51	49	28	53	36	29	27	50	37
TACCAGTCTTTCGCCG	alt_2572_negative	8	18	14	20	27	8	28	12	15	12
GAGCACCGCTTTTTGC	alt_2572_negative	32	48	52	42	42	37	31	48	42	27
GACCGCATTTTCTCTC	alt_2572_negative	70	82	97	92	62	78	58	78	74	76
TCATTTGGATTACTGG	alt_2572_negative	294	344	381	322	305	313	390	308	403	266
GCTTACCCTGTATGCT	alt_2572_negative	1	11	2	7	11	4	2	4	8	1
GCGAGCACATGCTATG	alt_2572_negative	101	114	122	144	103	100	109	113	111	95
TTATTTGTTACGTGCA	alt_2572_negative	0	0	1	1	1	1	2	0	2	1
GAACGCTTTAGAATGC	alt_2572_negative	44	48	57	46	33	47	56	46	51	39
CACCACCCCGGTCACA	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GGTCATGAACCGATTT	alt_2572_negative	132	112	130	114	111	125	115	136	124	104
TGGTTTAATTCGTGAT	alt_2572_negative	5	4	12	9	9	9	2	7	7	10
GGACACTTCTCACCGA	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
ACCAGATCCCCTCTAC	alt_2572_negative	12	17	19	11	18	8	16	12	23	16
TTCCTTTGGTTAAATT	alt_2572_negative	58	66	88	61	64	71	61	57	68	57
CTACGCGCGGTTAATC	alt_2572_negative	45	76	41	44	60	43	45	46	45	40
TAAAGCGCCCAAGCAG	alt_2572_negative	73	64	138	109	120	101	89	95	93	82
CGTGGAGCTTCATTTG	alt_2572_negative	20	44	21	26	26	14	23	22	22	9
TCTCAGTACTGCGTCC	alt_2572_negative	26	24	33	47	24	20	36	25	44	30
ACTTTCACGTGGCCCT	alt_2572_negative	47	39	46	26	32	26	33	23	25	22
AGCTCACGTCCTAAGC	alt_2572_negative	1	8	4	0	9	6	8	1	2	5
AAGCAACTATTTCTTA	alt_2572_negative	6	13	7	12	15	7	10	9	9	15
CCGTTTCATCGAGAAA	alt_2572_negative	10	8	6	5	9	6	4	8	9	7
TTCCAGTTATGATACT	alt_2572_negative	18	14	12	12	9	8	13	8	20	15
TGCATTGCGTATTTCA	alt_2572_negative	87	103	127	86	103	104	104	80	107	83
GGTTGAACCTCCGGGC	alt_2572_negative	0	0	0	0	0	0	0	0	0	0
GTCGAGAATAGGGGCA	alt_2572_negative	66	67	51	71	59	55	59	50	77	48
GTAAAGGTCTGGTGGT	alt_2572_negative	43	48	56	52	61	40	43	34	48	39
TTCTGCTGGTTGCGCA	alt_2572_negative	9	10	7	10	10	4	4	6	7	4
ACTTGCTTGCTGGCCG	ref_5912_new	0	0	0	0	0	0	0	0	0	0
TTATGCTCCCGGTGCT	ref_5912_new	38	70	36	35	54	19	74	20	69	29
TCTTGACACAACGAAC	ref_5912_new	52	100	66	46	90	43	111	58	121	50
TACTGATCATAGGGTT	ref_5912_new	0	0	0	0	0	0	0	0	0	0
TCACGACTCATCCCTA	ref_5912_new	14	51	16	9	57	17	41	10	38	13
ATGGGACTTAATGTAT	ref_5912_new	0	0	0	0	0	0	0	0	0	0
AGACTTCAACCCTGCT	ref_5912_new	22	51	38	35	59	28	65	39	46	35
GGAAGTTCCCCTTGGG	ref_5912_new	9	3	13	8	8	10	13	6	10	8
CAGGCGGTCGGTCTTT	alt_5912_new	0	0	0	0	0	0	0	0	0	0
CGCAGGTTATCTCAGT	ref_5912_new	58	59	48	44	33	56	78	37	135	47
TTTATTGCAACCCTTC	ref_5912_new	84	114	111	86	126	76	130	102	144	69
GTACTGTCGGGCTACT	ref_5912_new	81	140	122	100	172	96	171	91	178	96
TCCGGTAACGCTGGAT	ref_5912_new	27	33	29	18	28	15	28	25	49	21
GGTATGACCTGGTTTA	ref_5912_new	33	36	30	28	40	21	39	18	30	14
TGTACCTCTAAGGCCC	ref_5912_new	0	0	0	0	0	0	0	0	0	0
AGTCCCCTTATGCGTC	ref_5912_new	18	33	25	12	30	23	47	16	40	18
TTTCTTCACCATTGTG	ref_5912_new	10	20	10	9	11	8	6	13	10	9
TGTTTGTATCAGCCGA	ref_5912_new	14	11	14	18	13	9	14	14	21	6
TTTTGTCATCGTTGTC	ref_5912_new	44	46	32	34	44	24	47	36	73	37
GTCGTCCACACTTTTT	ref_5912_new	12	27	21	5	33	11	34	16	35	19
CCCAGGTATGTGAAGG	ref_5912_new	21	43	20	25	31	25	29	12	31	16
CAGTTTCACAAGTTTC	ref_5912_new	12	22	12	10	16	6	22	11	8	6
ACTCACCACCTCTGCT	ref_5912_new	0	0	0	0	0	0	0	0	0	0
CAGCAAAAGCAATATG	ref_5912_new	0	0	0	0	0	0	0	0	0	0
GACTTTTTTTCGTAAC	ref_5912_new	9	23	14	4	28	15	24	6	15	9
TCTTCGCATGGGCCGA	ref_5912_new	12	32	44	32	40	17	38	32	32	15
CTAGTTTTGTAAATCG	ref_5912_new	3	10	3	7	5	6	9	1	11	4
TTCTACATCTTTGAGC	ref_5912_new	0	0	0	0	0	0	0	0	0	0
TATGTATGTCGAAAAC	ref_5912_new	54	102	87	78	119	68	117	55	120	54
CGTCGCGGCGATCGAT	ref_5912_new	26	43	36	39	33	26	36	29	49	36
AGCCTGGTCAGGCGCT	ref_5912_new	13	18	16	15	28	8	18	6	35	10
AATCTGACTCACCGTA	ref_5912_new	2	7	2	4	16	4	15	0	8	4
TAAGCACTGCCTAGCA	ref_5912_new	0	0	0	0	0	0	0	0	0	0
ACGCGAGCACTAATCG	ref_5912_new	0	0	0	0	0	0	0	0	0	0
AAGCTTCCCTCCCCGT	ref_5912_new	0	7	0	2	9	1	9	1	12	1
AGCGTCGTCAAGGTTG	ref_5912_new	16	55	14	16	66	10	48	15	49	12
GTGCAGATCTTCACGC	ref_5912_new	0	0	0	0	0	0	0	0	0	0
GTGGTTCGCCTTCTTC	ref_5912_new	13	23	13	12	17	13	17	9	14	10
AATAGCGCAAGATCCA	ref_5912_new	18	14	14	16	21	10	24	13	14	12
TGTAATGCGCATGGAT	ref_5912_new	0	0	0	0	0	0	0	0	0	0
AGTTGCACGTCTATTA	ref_5912_new	0	0	0	0	0	0	0	0	0	0
CAGTCTTAGGCGCATT	ref_5912_new	0	0	0	0	0	0	0	0	0	0
TGTTCCTCAATCGCTC	ref_5912_new	5	6	0	0	5	7	11	4	4	3
TAAACGATGTCCGCGA	ref_5912_new	13	12	12	9	19	9	14	10	14	6
ATTGCGATATGCGAAG	ref_5912_new	6	9	9	1	8	1	7	3	7	2
GACGCCAGGGTTTTTT	ref_5912_new	17	17	36	18	45	23	41	14	36	13
GGAATCATGCTGTCTA	ref_5912_new	0	0	0	0	0	0	0	0	0	0
GGTGATCTCCGTGGTA	ref_5912_new	2	8	3	2	11	4	8	5	7	0
CGGTATCCCACCTTCC	ref_5912_new	15	15	5	17	16	6	21	11	16	14
GGGTAACCAGGATGGG	ref_5912_new	59	86	76	61	80	51	79	52	91	55
ACTGATAATGCTTTTC	ref_5912_new	32	59	32	24	69	26	53	19	52	39
CTTGTATACTGATCTG	ref_2582_reverse	43	39	50	41	51	43	54	44	60	49
TAACGCTAGTTCCTGC	ref_2582_reverse	4	6	7	6	4	4	3	8	9	5
TGTGCCAGGCATTAGT	ref_2582_reverse	79	94	83	67	77	88	97	86	102	81
GACGTCATTCGTATGC	ref_2582_reverse	41	39	60	43	54	53	31	45	38	36
CGGTTGTATTACGTTT	ref_2582_reverse	5	13	4	5	11	9	11	15	8	2
CGCGTTCTTTCCAGAA	ref_2582_reverse	23	14	21	36	31	20	28	17	15	19
TTCGTTCCGTTTCAGT	ref_2582_reverse	16	12	15	10	23	16	26	13	21	22
GTAAGCCATCACGCTT	ref_2582_reverse	26	63	29	47	47	27	55	28	62	31
TCTAAAGTTGCCGCTA	ref_2582_reverse	27	25	35	36	45	27	26	28	48	26
CGGTCAATTTATAGAA	ref_2582_reverse	147	133	163	146	151	148	122	136	127	119
TCCGGTCATTAACGTG	ref_2582_reverse	30	39	33	22	50	25	41	26	30	18
GACTGTTGGCGTAGTC	ref_2582_reverse	50	47	66	45	61	33	53	32	59	31
AGCATATGCCTAAAAT	ref_2582_reverse	15	15	16	9	17	10	8	12	13	10
CCGAAAATAATTTAAT	ref_2582_reverse	15	13	13	8	12	2	7	10	8	6
CAGGTTCCGATATTAT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CACCAACCGCTGAACG	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCGCACTATTTAAAGC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGCAATACCCCGG	ref_2582_reverse	8	21	7	15	13	6	18	11	20	10
TTTTCAGGCGGTCCGT	ref_2582_reverse	158	177	198	128	146	156	161	146	178	108
TCGGGCCACATCGTGG	ref_2582_reverse	26	15	24	17	16	12	21	21	24	17
CGGTCTGTTAACCTTC	ref_2582_reverse	20	16	29	22	16	21	17	22	32	22
AACTTGAGTTGTATCG	ref_2582_reverse	5	2	8	4	9	9	6	6	12	7
TGGAAAGTATAATGGT	ref_2582_reverse	51	40	70	54	56	48	59	40	54	56
CACGCCGATAACGGCT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGGTGGTGCAAGG	ref_2582_reverse	5	5	5	2	4	7	7	2	4	3
TTACCAGCTCTTCCAT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CGATACACTTTGGATT	ref_2582_reverse	0	1	1	2	4	1	1	1	0	0
ATTCCAGTGTTTACGT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTTCCCACTTCAC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CTTGATGACTCGCTAA	ref_2582_reverse	28	20	24	32	36	23	38	18	40	21
GACACCACCATAGTTC	ref_2582_reverse	30	28	16	17	36	15	32	16	27	22
GAGGCATTTTTGGTAC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCTGCCTTGGCT	ref_2582_reverse	8	4	6	10	8	4	7	11	8	1
TAAGGGACGAGGAAAT	ref_2582_reverse	87	54	76	76	66	69	67	90	73	77
CGCCGACTTTTCGTCA	ref_2582_reverse	11	13	4	12	10	9	20	13	16	10
GAGGTCTGATATTAAA	ref_2582_reverse	86	90	119	92	71	109	95	89	103	97
GGTTACTCGCGCAACA	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCGCTCTTTCTAA	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGGGGTCTAGTGT	ref_2582_reverse	152	154	149	143	165	139	176	118	170	125
CATCTTTTTCGCAGCT	ref_2582_reverse	38	47	46	36	39	40	51	23	50	32
AAGCGATGAAATGTTT	ref_2582_reverse	34	20	38	33	45	29	30	30	36	29
TATCGCCCTCCATGAG	ref_2582_reverse	23	24	40	38	19	30	22	35	23	17
GGACCTGAATACTCGC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCTACAGGTCTCCTAG	ref_2582_reverse	0	2	5	3	3	2	2	0	3	4
AAGAGCAAATCGGTCG	ref_2582_reverse	12	9	18	14	7	21	9	10	18	24
TGTACGGAATCGTCTA	ref_2582_reverse	10	4	2	7	1	5	4	4	3	2
GTCAACTAACAACAGA	ref_2582_reverse	6	2	1	1	2	2	2	2	2	0
AGACGGCATTCTCGGT	ref_2582_reverse	78	76	93	83	91	68	68	71	94	83
GTTCTTGTCTTTAACT	ref_2582_reverse	12	6	10	8	11	5	18	9	8	8
TACCGTGTTAAGTCCC	ref_2582_reverse	5	7	17	11	13	10	13	10	7	4
TCGTTTGAGCTCCGAG	ref_2582_reverse	67	53	69	46	57	55	65	64	76	46
TAGTAATGACACCTTT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CCGAAGTTTAACCAAG	ref_2582_reverse	0	1	4	1	1	3	0	4	2	0
ACTCATGACAAATACT	ref_2582_reverse	6	4	7	6	6	5	10	9	6	3
CATTATATCCTAGCGA	ref_2582_reverse	3	8	6	9	1	8	4	3	4	5
CAAGTTATCTGCCCCA	ref_2582_reverse	25	18	36	23	15	21	25	17	25	18
TTCTAATGATTTTTGG	ref_2582_reverse	34	45	56	52	26	41	49	43	44	41
ATGCTTCCTGGTCTGG	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CACGCTACATCGTCAG	ref_2582_reverse	35	45	30	31	45	30	40	21	44	25
ACTAGGGGTTGGCATT	ref_2582_reverse	14	15	10	7	13	3	12	12	14	12
GTTTGATAAGTGCCTA	alt_2582_reverse	85	85	102	75	72	66	97	90	85	86
TTTTCTCAGCGCTCTT	ref_2582_reverse	34	21	32	40	48	39	43	38	46	30
ATTACCGTCGGTCCTA	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
AACGCAGACTGGTCGG	ref_2582_reverse	35	41	70	49	35	47	47	49	48	43
TCTGGCAATAGTTGCT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CCGGATATGGACAATA	ref_2582_reverse	112	93	110	82	123	89	95	99	110	90
ATTGGCATTATGATAT	ref_2582_reverse	47	33	45	36	38	37	32	42	35	31
CATGTTTACTCTGTGC	ref_2582_reverse	8	11	10	15	27	10	8	16	20	5
ACGCGGTTTGCACAGG	ref_2582_reverse	89	93	126	80	84	87	89	99	119	90
TTTCCTATGGCTTACC	ref_2582_reverse	38	37	29	20	42	22	32	28	25	22
TATCGAACTTATCATT	ref_2582_reverse	4	4	14	7	8	4	7	5	6	4
GTACTCCCGCAGTGTT	ref_2582_reverse	0	2	0	1	5	1	1	1	1	0
GCCTGTCGAAGTCCCA	ref_2582_reverse	159	183	183	169	208	128	196	117	202	134
ATTATGCCATCGGACT	ref_2582_reverse	9	29	20	18	19	20	14	17	21	20
CGCGGTGGACGACGGC	ref_2582_reverse	127	129	141	100	76	77	109	89	104	90
GTCCCTGTTACTTCAG	ref_2582_reverse	187	163	225	166	201	181	208	182	178	174
AGTTACATCGCTTGAC	ref_2582_reverse	48	54	55	51	48	46	32	44	64	47
GCCTCGTTTATTATCT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCCGTACCAAGGT	ref_2582_reverse	45	47	55	68	62	62	60	48	45	50
GTGCGTTCTCTTACCT	ref_2582_reverse	2	4	4	2	3	1	2	1	6	6
GTCCCTGCACTTGTTA	ref_2582_reverse	30	28	17	25	26	16	31	27	21	22
TGTCGCGTCTACTAGG	ref_2582_reverse	22	32	24	18	15	13	15	19	16	17
TGTGCTGATACCCTTG	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TGTATTACGTTCGTTC	ref_2582_reverse	0	0	0	0	1	0	1	1	5	0
GTCACTGAGCTGCCAA	ref_2582_reverse	174	153	206	166	141	138	165	171	177	155
GGACTCGCCCATGTTC	alt_2582_reverse	43	37	46	56	46	52	64	49	43	40
CATCCCCTCTTGGTCT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TAATTGTCAATCTGCG	ref_2582_reverse	15	9	8	11	11	17	8	9	15	6
CTTAGGAGGGGTATAT	ref_2582_reverse	8	20	21	8	14	19	14	8	27	17
TAACTTACATGATTTG	ref_2582_reverse	37	48	50	50	42	40	55	41	54	31
TTCTTCAGATCATTTA	ref_2582_reverse	11	9	12	9	13	13	13	10	14	12
CTCAACGTTTTTTGTG	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTGTTTCCTCAAC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCCCGGCCTTCTG	ref_2582_reverse	86	116	99	87	118	84	123	78	105	71
AGCAGGAATGCGGCAG	ref_2582_reverse	17	16	34	13	25	17	27	27	17	14
TACATTCAGTTTCGCC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTTTTGGCATGAA	ref_2582_reverse	0	0	0	1	0	0	0	0	0	0
TGGGTGTTTCGCTCAT	ref_2582_reverse	41	73	58	37	53	49	34	47	58	39
GTTGATAGGGGACTAA	ref_2582_reverse	88	89	110	109	103	87	85	105	129	86
TGGTACGCGCTATTTT	ref_2582_reverse	65	57	75	82	55	58	62	74	59	60
TGGTGCCCGTTTACCC	ref_2582_reverse	24	22	28	27	18	13	32	30	26	18
TTCTTCTTTTGACGGT	ref_2582_reverse	22	14	22	11	13	24	13	13	9	10
GTTCAAAGGCCGACTG	ref_2582_reverse	20	15	12	14	21	12	18	5	18	7
CGTCCTGCTGCGTACT	ref_2582_reverse	27	23	42	33	29	24	19	26	19	19
CGGTGCGACCCGTGCT	ref_2582_reverse	22	43	17	17	52	13	61	12	54	14
CTTCCCTTTTCGACGT	ref_2582_reverse	6	36	8	5	41	5	31	7	34	8
AGGAGAGGAGGAGCAT	ref_2582_reverse	54	49	77	59	47	69	54	45	53	67
TGCGGTCTGCCGAGGC	ref_2582_reverse	41	39	65	43	50	47	50	26	44	38
TAAAATCAGCGTACCT	ref_2582_reverse	12	15	15	13	19	18	18	8	18	4
CGACATCTTCGGTGTT	ref_2582_reverse	29	18	38	23	19	33	32	30	25	22
TTTCCAAACCGCTCAG	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
ATGATGGTGTTACTCT	ref_2582_reverse	40	39	64	53	60	53	59	45	62	42
GATTCCAAGTCTCGGC	ref_2582_reverse	5	11	14	9	6	7	6	6	10	8
TGTAATTGCAAAGTGC	ref_2582_reverse	21	41	50	28	37	34	37	26	39	29
TGTTCGCGCATGCGCG	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
CATACACTTCAGGTCT	ref_2582_reverse	19	17	24	23	16	21	17	16	22	19
CGCTTCCGTGGTTGGT	ref_2582_reverse	15	15	15	18	19	14	22	10	16	14
GACCAAGGAGCACAAG	ref_2582_reverse	24	24	22	28	24	18	31	23	29	18
ACCCGCACCTATGGCC	ref_2582_reverse	3	3	8	4	3	1	8	6	3	7
CATTCCGGCAGTACTA	ref_2582_reverse	63	61	61	46	75	64	60	65	37	58
TAGTGGTCCGCCTATT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TGAGACTTTGTATTTA	ref_2582_reverse	12	16	18	16	10	17	18	18	27	15
CCGGGGTTTGGGTCCG	ref_2582_reverse	30	31	31	24	40	16	31	25	25	21
GTAGTCTTAATTCGGC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGGGACCTATCCA	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
ACACGTTTTATGGTAC	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
GAAGCGATTATTGCTA	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCAGTTCTGGAT	ref_2582_reverse	0	0	0	0	0	0	0	0	0	0
TTACGGGCACCCGGGT	ref_2582_reverse	18	26	21	34	13	22	20	26	15	12
ATTCGTTTAGCGTCAG	ref_5993_new	94	83	96	80	97	72	81	67	95	90
ACAACCCGGGGATAGC	ref_5993_new	44	91	59	41	92	39	75	45	83	39
TAAGGGAGCACTATGG	ref_5993_new	14	14	14	12	13	13	7	10	10	10
GTGATACTCTTGGGTC	ref_5993_new	14	22	24	10	21	10	22	11	22	9
ACGATATGTGGCTGGG	ref_5993_new	35	38	69	49	48	29	61	38	45	42
AGCAAGACCGCAAGAC	ref_5993_new	3	7	5	3	6	3	2	5	4	4
ACCTCATTTTTAATTG	ref_5993_new	31	21	32	54	34	28	49	47	31	22
ATTCATTCAGGCAAGG	ref_5993_new	0	0	0	0	0	0	0	0	0	0
TGCGACTATAATAGCC	ref_5993_new	0	0	0	0	0	0	0	0	0	0
TGTGGTAGTGCGCACT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
CTTTGTCGAAGTTCAG	ref_5993_new	58	77	70	76	61	66	61	68	92	71
CATAGCCGACAACTCG	ref_5993_new	41	47	51	51	53	39	70	45	55	53
CTTCGGTTGTCCGTCC	ref_5993_new	53	55	69	84	65	49	82	67	89	61
GCTGCCGGGCAATACT	ref_5993_new	45	58	51	64	52	50	52	56	49	44
GCGGTTTTTGTTGGGA	ref_5993_new	30	42	23	32	37	34	34	28	44	25
GATCAAAATGGGTCTT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
CGGCCACCCTCATCTT	ref_5993_new	18	54	35	34	59	25	52	28	48	25
CGGTTCCCACGGGTTT	ref_5993_new	37	39	48	57	36	44	44	37	29	43
GGTACCATCCCCTCTA	ref_5993_new	0	0	0	0	0	0	0	0	0	0
ATCGCCAGCCGTTTAA	ref_5993_new	44	33	47	48	52	44	42	28	41	35
TTTATGGTGAAAAGCT	ref_5993_new	16	12	14	5	14	12	12	10	23	12
CGTGATAAGTGTGCAT	ref_5993_new	31	24	30	31	34	18	32	23	25	38
TCGAGGTACCATATAC	ref_5993_new	0	0	0	0	0	0	0	0	0	0
ACCCACCTGCCACCCT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
TGTCCGCACTAGAGCA	ref_5993_new	26	40	33	29	38	25	44	29	33	24
CAATTCCTATTGGCGT	ref_5993_new	4	4	7	2	7	4	6	6	9	7
GCCATAAAGATCACTG	ref_5993_new	93	78	89	67	84	68	79	71	76	45
TGCATGGTATTGACGT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
TCCGGCTACTTGGATT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
TAGCCTTACTGAGCGG	ref_5993_new	0	0	0	0	0	0	0	0	0	0
GGAGAATATTGGTCAT	ref_5993_new	157	182	217	170	184	149	195	127	181	123
GGTCTTGTGGTATACC	ref_5993_new	6	8	3	3	11	4	12	1	6	3
GCGTAGGCGTTGGAAG	ref_5993_new	14	23	23	21	29	14	15	11	20	8
TGATTCAAACTCAATG	ref_5993_new	12	17	16	16	19	11	12	24	13	17
ATTTTTGTTCTCCCAT	ref_5993_new	35	51	47	47	70	39	71	31	64	23
TCGGGCGGCTTACCTA	ref_5993_new	0	0	0	0	0	0	0	0	0	0
TTAGAAGAGCATTCCG	ref_5993_new	0	0	0	0	0	0	0	0	0	0
CCCCTGGCTTGCTGAC	ref_5993_new	18	24	21	21	22	24	20	19	20	20
AGGGCTTGCCTCCACC	ref_5993_new	0	0	0	0	0	0	0	0	0	0
ATACCTAATTACGAAT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
AGTCACGGAACGCCGG	ref_5993_new	32	13	23	26	17	25	14	18	18	24
TTCACCATTGTAATTG	ref_5993_new	75	103	92	65	103	81	84	78	79	77
AATTGGCTGCGTATCT	ref_5993_new	6	2	4	3	4	4	0	8	5	5
CTGTACAATCTGTACC	ref_5993_new	0	0	0	0	0	0	0	0	0	0
GAGGAGTTGCTAGCAT	ref_5993_new	33	36	37	25	34	21	35	20	27	17
TTTAGTCATCGATAGA	ref_5993_new	23	24	27	18	26	14	15	16	20	22
TTGTAGAAGGTAGGCC	ref_5993_new	12	7	12	13	9	9	6	14	13	11
AAAGGTGATAAATAGC	ref_5993_new	16	23	26	21	25	18	26	19	28	19
GCCCAACGGCCGAGGT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
CGCTTCCCCGGGCGAA	ref_5993_new	9	14	8	12	11	11	6	11	12	15
TCCGGCAGCCGAAGTA	ref_5993_new	38	45	75	49	37	38	32	48	55	37
AGCGCCCCTACTCAAT	ref_5993_new	110	135	146	112	126	121	128	88	110	94
TTAGACATGAATAAAA	ref_5993_new	33	55	46	51	38	30	48	39	61	24
GAAATAAGGGGTAGAT	ref_5993_new	20	26	30	18	23	13	14	19	17	12
GGCACCGGATCGCCCA	ref_5993_new	0	1	3	1	3	2	1	0	4	2
CACCCAGGTTACCTCT	ref_5993_new	25	30	24	13	36	17	21	14	25	11
ATAAGGCGCTTTGCGT	ref_5993_new	57	62	50	61	57	61	58	51	59	37
AACCTTCGCTCATTGG	ref_5993_new	39	45	40	37	37	36	45	34	55	29
GGATCACTCGCCCCTA	ref_5993_new	0	0	0	0	0	0	0	0	0	0
TTAACTCTTCTGTTGA	ref_5993_new	0	0	0	0	0	0	0	0	0	0
CGACCTCGCGTGTGAT	ref_5993_new	169	159	193	148	188	135	196	144	226	141
ATTTATACCATCTCAC	ref_5993_new	17	13	7	9	7	8	14	11	16	8
TTTACTGCTGTTCGCT	ref_5993_new	118	136	161	164	174	135	162	121	169	114
TATCCGGGCTTCTTTT	ref_5993_new	45	46	60	39	43	28	49	47	60	49
TGTGGATCTTCTCTCT	ref_5993_new	68	67	66	63	61	57	92	52	90	59
TCGTTCGCTTAAGTTC	ref_5993_new	15	17	36	14	24	15	32	11	20	14
TCCCCCCCTCTGATCG	ref_5993_new	2	2	2	5	4	0	9	2	4	1
AGTTATCATTGCGTTG	ref_5993_new	50	78	64	53	77	57	79	42	69	52
TCAATCTGACGCACCT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
CGCGGAACTTCTCATA	ref_5993_new	24	25	25	26	14	26	20	17	19	15
TTTTAAGGAACGGAAC	ref_5993_new	0	0	0	0	0	0	0	0	0	0
ATACTCTCTCGAGCTC	ref_5993_new	35	45	38	28	31	24	40	28	48	20
CGCTCGTATTTATGGC	ref_5993_new	11	7	6	9	5	7	5	4	2	8
CAGCTTCGTCACAAAC	ref_5993_new	12	25	18	11	16	11	26	5	32	16
ATATGACATCCATGCC	ref_5993_new	0	0	0	0	0	0	0	0	0	0
GGTCGTGTGGACGAAA	ref_5993_new	0	0	0	0	0	0	0	0	0	0
CATTTCGATCTAAAGC	ref_5993_new	12	7	7	8	10	5	9	8	15	6
TAGGCTCTCGCGACTC	ref_5993_new	53	54	50	54	39	55	71	31	56	47
AGTAAGCCGTACCTTT	ref_5993_new	0	0	0	0	0	0	0	0	0	0
ATTTGATTCTAGAAAC	ref_5993_new	0	0	0	0	0	0	0	0	0	0
GTTGTCGATTTTTTCC	ref_1851_RC	4	1	2	2	2	2	2	2	2	3
CTCTGCGACGTGGCGC	alt_1851_RC	5	9	9	5	8	12	6	12	11	5
CAATTCAACTTCTAAC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTTTGCCAGGTG	alt_1851_RC	80	94	89	81	83	87	106	75	98	75
GTTGCTTCGCTCGGTT	ref_1851_RC	53	60	62	44	66	46	45	47	47	46
TACTCAAGCGGCAACA	alt_1851_RC	45	45	50	48	53	38	46	52	55	56
TCTCTCCGGACCTCAT	alt_1851_RC	14	21	14	9	19	12	12	17	16	9
CAACTAGATCGTTGTT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TCTACACTGCGCCTAA	alt_1851_RC	11	12	19	14	12	13	14	13	27	15
CCTAATCTTCACGAGC	alt_1851_RC	66	41	68	48	51	66	43	58	47	42
GGCCACCCCTCCCAGT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TTCCATCAGCCACAGG	alt_1851_RC	6	3	5	2	8	9	9	10	7	6
TTGTTCCATTCAGTAG	alt_1851_RC	42	44	46	43	40	45	43	40	41	40
CGAAATTTCGGTGACA	alt_1851_RC	30	22	25	31	24	22	16	30	25	19
GCACTTGGTCATATGT	alt_1851_RC	33	30	30	17	28	22	35	25	31	22
AACCCTCGTACACATC	alt_1851_RC	17	28	25	26	17	18	20	29	28	22
GTAGTGCAACGATTCC	alt_1851_RC	5	5	8	7	2	4	7	8	14	11
AGTATCCAGATTATAA	alt_1851_RC	19	11	13	8	14	16	19	12	22	17
GCGCTGGGACATAACT	alt_1851_RC	34	47	51	34	38	18	38	40	42	43
GCGAGAACTTTTTGCC	alt_1851_RC	18	24	31	14	18	18	22	21	19	20
GTCTTTCATCAGCCAC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGCTATTCCTTC	alt_1851_RC	11	16	19	25	10	21	20	15	17	23
TTATTTATCTATTGTC	alt_1851_RC	112	92	113	105	68	99	74	92	97	77
TCTGACTGTTCTGGTG	alt_1851_RC	3	3	1	7	6	9	2	2	1	1
TCTTAACCTATAAAGA	alt_1851_RC	0	1	6	2	5	5	2	5	6	1
CGCTGAGTGGCGCACG	alt_1851_RC	3	7	8	5	7	4	14	8	12	10
GAAACCGGGCCATTCA	alt_1851_RC	21	29	31	14	38	21	28	28	22	21
TTTTGTTAGCAACAGT	alt_1851_RC	15	11	14	7	17	11	12	19	21	11
TACCTTCTGCTCGGTC	alt_1851_RC	99	123	142	142	138	100	131	102	140	97
ACATTGAGGCAGTATA	alt_1851_RC	10	18	27	17	19	15	18	28	24	25
ATGCCACTGGTTAGTA	alt_1851_RC	4	12	5	9	11	7	8	5	8	5
TACTCACTCGATCGCG	alt_1851_RC	24	17	18	19	29	35	27	29	33	21
ACGTCACTGCCACCCC	alt_1851_RC	33	37	38	34	44	34	42	32	45	39
ACGGTAGACTTCTCCT	alt_1851_RC	6	10	14	19	10	16	21	8	10	13
ACCACTTCAAGATAGA	alt_1851_RC	20	28	19	27	24	13	20	19	32	16
ATCATGTGCTGTACTC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GTACTTGTTAGTCATA	alt_1851_RC	16	15	23	19	20	13	24	23	24	17
GACGTAGCTCTCGTAG	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
CAGATATTGAGGTTCT	alt_1851_RC	14	20	15	24	23	19	29	12	21	15
ATTTACGCATTTGAGC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGAACGGATACT	alt_1851_RC	13	16	15	15	11	14	17	12	17	9
TAGAGAAAATTACTTG	alt_1851_RC	21	12	8	13	5	18	17	18	26	13
GTACGGACTTTGGTCG	alt_1851_RC	20	13	13	16	23	17	18	19	26	20
ACTGGGACTTAATGTG	alt_1851_RC	9	10	9	13	12	11	12	11	18	8
GCATGTTTCGCGGGCC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCCGTGCGAGGG	alt_1851_RC	3	2	1	3	2	1	4	3	3	2
TATATGTTTTCGTATG	alt_1851_RC	37	27	32	38	35	34	33	23	28	31
TCCGAACGCACTCAGA	alt_1851_RC	5	5	6	2	3	6	4	2	7	4
TGTTGGAATTGCAATA	ref_1851_RC	81	82	77	87	85	70	96	78	91	50
TTTATTACGTCATGTT	alt_1851_RC	51	47	76	66	48	72	57	55	45	46
TCCTTAGAATAAACTT	alt_1851_RC	24	21	30	24	24	9	26	17	27	16
CAAATATATGCGCCTT	alt_1851_RC	50	25	36	48	29	27	40	39	43	37
CGGTTATGCTAACCGC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
CTAGCGCCTTTTTCGC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GTGTTAAGTCCGACAT	alt_1851_RC	33	47	47	50	26	31	35	34	36	28
AGCCTAATGAACAAGC	alt_1851_RC	14	24	21	16	18	20	15	22	22	17
ATCACCTTTAACAATA	ref_1851_RC	44	103	72	57	119	49	115	61	118	32
TCAAGACACCCCAGGT	alt_1851_RC	34	38	37	42	31	37	42	29	30	20
TGGCCGAGTCTTGGGC	alt_1851_RC	26	38	38	51	43	36	35	32	29	27
GCGTAAGTTTCCCATG	alt_1851_RC	49	44	45	48	39	31	40	37	51	36
ATTCGGAATAAGTTCT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TCGGGCACGGGAGCGG	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TAAACGTAGGAGTGTC	alt_1851_RC	24	16	14	17	27	17	23	11	16	17
CTGTGACACTCCTATT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TCTACACCTATGCGTT	alt_1851_RC	24	19	27	33	29	20	21	18	27	18
CAGAACGGGTGTTGAC	alt_1851_RC	46	60	65	43	49	41	60	59	57	44
TTTTCTATCTGACCCG	alt_1851_RC	23	30	58	29	33	27	45	31	44	22
GACGGCTGCTACTTAT	alt_1851_RC	1	0	0	0	0	2	2	0	1	1
TTTTAACGAATTCGGT	alt_1851_RC	16	17	18	13	24	9	7	15	12	21
GTGCTGCCTCTACGCA	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
AGAATCCTGCTTTAGA	alt_1851_RC	20	18	13	20	12	28	14	39	11	18
ACATCAGTGGCCTCAA	alt_1851_RC	15	13	21	29	15	18	26	15	14	10
TGTAAACTCATTGCGG	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GCACAACTTCTCATTC	alt_1851_RC	20	24	40	21	39	21	27	31	42	19
GTCACCGAACGTATTC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
CTAATTCCCGTATTTC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TTTTATCGCCTACCCG	alt_1851_RC	89	103	124	101	128	113	99	108	109	76
TTAGCTGATTTGGTGC	alt_1851_RC	41	58	52	50	50	52	64	40	58	30
CTCCAGGTTACCCGTC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TTTACTGTACCTCTTG	alt_1851_RC	30	22	27	25	42	21	39	19	42	22
TACTGAGAACTGGTCG	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
ATCGATCGGCCCCACC	alt_1851_RC	33	35	30	24	30	25	23	20	35	24
ACAAATTGCGTTATTT	alt_1851_RC	23	20	25	15	16	22	9	21	28	26
CGTACACGTATACCAT	alt_1851_RC	7	8	9	5	7	9	10	8	9	5
GAGGAAAGGGCAGCAA	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GCAGCGCTTAATGGTC	alt_1851_RC	40	25	30	24	33	27	28	25	32	28
GTAGCTAGTTACTATT	alt_1851_RC	37	52	32	36	29	18	31	27	36	34
GGCTCCAAATGACCGG	alt_1851_RC	6	10	6	11	4	3	13	3	4	7
TATTTATCTGATCGCT	alt_1851_RC	21	40	60	38	47	42	35	25	31	41
CAGCAGGTCTGTGTTC	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TGGGCGCTCCGCATTT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
AATTTCTGACTATTCA	alt_1851_RC	34	34	43	19	22	25	25	31	33	34
ATACGTTTTTTTCCGG	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TCAAAATCATTGTGTT	alt_1851_RC	2	0	1	2	1	1	6	1	3	4
GGGGCCCTGATTCAAT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GCTATCACGGAAAGAT	alt_1851_RC	25	30	46	25	30	22	29	28	30	26
AAGATAATCTAGAACA	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GCTCATAAGTTTCAAG	alt_1851_RC	18	17	23	17	27	14	31	29	24	11
ACAAACTATTAGTTGC	alt_1851_RC	33	23	27	17	24	25	31	28	31	28
CGCTGCTACACGCGCG	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
CAGTTTTGCCAATAAG	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GTATGTTCTCTGCTAT	alt_1851_RC	57	52	68	54	68	40	75	61	77	54
GAACTCCTAGTGCATT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GGGAATTGTTTTCTTT	alt_1851_RC	49	33	55	48	50	43	49	43	41	48
TGAGCTTAACCATAGG	alt_1851_RC	23	40	33	36	40	37	37	27	19	25
GCCCGGATGCATGGTT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
TCCGCGGTATACCTGT	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GTGTTCCTATTAGTCA	alt_1851_RC	0	0	0	0	0	0	0	0	0	0
GGTTTATTAATGCATA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
ACCAATTCTCGCCTTA	ref_2205_reverse	10	82	15	9	86	15	96	9	73	9
AGAGTAGTTGGTCAGT	ref_2205_reverse	16	19	14	14	20	11	25	13	25	8
GTTGTATTGCTGTTAG	ref_2205_reverse	3	3	5	3	6	7	2	2	5	3
ACGTGTCCTGATCATT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GGTACTCTGATAGTCT	ref_2205_reverse	2	9	3	10	10	5	14	4	12	3
TCGAGTGCACTGACCA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGTATCCACCTAT	ref_2205_reverse	8	12	8	5	9	7	15	4	13	5
GTCCGCGGGCTCTTTT	ref_2205_reverse	20	36	22	26	30	27	37	22	31	20
CGTCTTTAGTCGATGG	ref_2205_reverse	31	39	42	23	43	25	50	35	63	28
ATTTTCCTTATTCTGT	ref_2205_reverse	43	33	32	21	49	41	35	30	51	20
CTGTGTTTGCCGTCAA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTCATCCTATGGT	ref_2205_reverse	79	117	82	74	120	73	119	68	114	84
GGTTAGCCTTCGCGAC	ref_2205_reverse	91	114	92	70	127	90	151	66	164	70
CGATACTAAGATTGCT	ref_2205_reverse	43	69	45	34	71	28	73	24	73	30
GTTCGTTCGTTTGCGG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCAATACACTGGG	ref_2205_reverse	16	35	17	11	22	16	31	17	23	13
CGTAATATTTGCCTTT	ref_2205_reverse	10	21	18	15	17	6	25	6	21	8
CCCGCGGTACATGTCT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
AAATGTCGTCCGCAGT	ref_2205_reverse	4	0	2	2	3	4	3	2	1	0
GACAAATCGTCCCGAT	ref_2205_reverse	19	21	40	28	35	21	19	18	32	27
TGTTTTATCGGGTCGG	ref_2205_reverse	20	34	18	19	37	14	40	12	39	9
GCCGATGCAGGCGACA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGATTTATTTTCT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTGGTCGCAGAA	ref_2205_reverse	14	29	34	15	33	12	23	14	36	9
GTTGGTGCATTGCACT	ref_2205_reverse	20	36	19	29	49	24	35	22	55	18
GCCCGGTGGGGGCTAT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CATAAGGTTAGGACTT	ref_2205_reverse	13	25	24	15	24	15	31	15	16	21
GAGAGGTAGCACCCGC	ref_2205_reverse	9	12	6	12	21	11	22	12	22	9
GTTTAGTTACTTCGGT	ref_2205_reverse	17	42	34	30	56	29	48	22	61	30
TGATGCGTAAGTTTCA	ref_2205_reverse	8	18	25	21	31	12	16	16	28	11
AGAACAGTTTATATGT	ref_2205_reverse	13	23	14	8	17	9	15	11	18	5
ATGGACTAGAGTCGCA	ref_2205_reverse	43	74	51	40	90	27	72	37	81	37
CAGCTTTGTTATTCCT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CACGTTCCTCAGCTTT	ref_2205_reverse	0	1	6	1	4	4	3	1	1	3
TAGACAATGAGTGTTC	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CAAACGCCGCGGTTCC	ref_2205_reverse	9	25	19	25	43	24	29	13	34	24
TGCTTTTAACCCGTAA	ref_2205_reverse	6	10	9	6	9	7	15	6	15	9
GTACCGTTACCATCAC	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCACACCACTGAG	ref_2205_reverse	6	7	4	5	7	2	8	0	5	2
GACGCACTCAGATTGT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
ACCCATGACGGCTCTG	ref_2205_reverse	56	103	79	65	115	58	119	51	114	44
AATTCATAGTCCTGGG	ref_2205_reverse	3	12	8	13	20	8	24	5	14	12
TTTCTTTCTTGGCGAT	ref_2205_reverse	14	37	25	20	53	24	32	17	36	27
TACAGCTCCAGTTCAA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CGATATCGTTCTCGCT	ref_2205_reverse	2	4	4	2	2	6	6	1	6	2
TAGCATTGGACAAACC	ref_2205_reverse	29	38	31	32	51	29	41	25	55	28
GCTGGTTTGGGTGTCG	ref_2205_reverse	10	17	12	11	17	13	14	7	26	15
GTCGTCTGTTTGTTGT	ref_2205_reverse	19	23	20	16	27	14	31	17	35	18
ATATTAACTTTTTTTA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
AAATTAGTACCCACAT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGGAAGAGACTGA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CGGATATTAAGTACGA	ref_2205_reverse	24	48	35	27	50	27	41	24	44	23
TTGTTACGCCTTCTAG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GATCGTTACTGCAGTC	ref_2205_reverse	24	44	21	26	40	23	59	26	50	21
AGGTAATTAGTCACGT	ref_2205_reverse	3	4	2	2	2	2	2	3	6	1
AGTTCAACTACATTAG	ref_2205_reverse	8	10	5	7	17	4	9	11	18	3
TGTTCTTATTTTAGTG	ref_2205_reverse	8	12	6	6	14	14	7	5	16	5
GACGCCCCGTGTATGG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTGTTCAATATGA	ref_2205_reverse	102	241	111	118	196	112	223	97	218	102
CGTCTTCAGTCCCAAC	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTTGGCTGCACCC	ref_2205_reverse	32	54	31	33	54	37	49	40	55	26
GTCTGTATGGTAGGTT	ref_2205_reverse	14	23	17	22	18	11	34	6	27	4
AGTTTAAAATTTTTGG	ref_2205_reverse	6	10	8	3	10	6	9	1	9	5
TTCTTATCGTCAAGTG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTTGGTGCTGAGA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATAATCTGTGTA	ref_2205_reverse	39	59	40	44	64	36	67	29	71	37
GCTGAATTGCTGGCGT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCTTTCTAGAACA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
TATTATAAGAAGGAGT	ref_2205_reverse	1	1	0	0	0	2	2	2	2	1
TCAGCTTTTCTCAGGA	ref_2205_reverse	9	31	16	15	17	13	25	19	12	9
AGACCTCTGGGGTCCT	ref_2205_reverse	6	16	14	8	10	8	6	17	19	12
CTAGTTCCGAGCCGGT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CAAATGGACTGCGGGC	ref_2205_reverse	5	9	4	13	12	7	18	5	13	4
TGCTACGCCCATAAGA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTAGCACGGTAGT	ref_2205_reverse	18	31	17	23	21	11	24	5	30	17
CCGCAGAACGGATTGG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
TTTACATAGTACGTTG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGCCTGGATACG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CTTAAGTTTGAGACTG	ref_2205_reverse	18	32	14	18	21	15	32	9	37	18
GGATTTTAACTCCCTC	ref_2205_reverse	12	27	17	28	28	12	33	14	19	13
TCCAGTAATTCTAGGG	ref_2205_reverse	7	10	7	4	9	8	6	4	8	3
TATTTCTTGTCCCCCG	ref_2205_reverse	12	28	22	13	32	13	13	18	24	8
GCGTTTTGGCCAGGTT	ref_2205_reverse	9	23	14	8	14	9	18	13	19	3
TGGCTTAACAGTAATC	ref_2205_reverse	5	8	8	3	14	5	10	9	14	8
TGATATCGGCCATGCG	ref_2205_reverse	10	11	14	7	5	5	14	5	14	8
CTCTACGTACCGCAGT	ref_2205_reverse	39	95	53	56	82	32	109	37	108	45
GAGCGTTATTGAGAGG	ref_2205_reverse	61	124	65	86	103	74	133	56	117	58
CTTAAACTTGGTTGTG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GACTCCATCTTTGAGT	ref_2205_reverse	20	22	18	23	35	13	24	18	24	4
CGCAGGGTCTAGTGTG	ref_2205_reverse	2	0	0	2	3	3	1	4	6	4
CTCAATATTTCTTGGC	ref_2205_reverse	16	26	28	21	37	20	40	17	36	22
TCTACGGGCACACGAA	ref_2205_reverse	6	4	4	9	7	6	11	11	11	7
TTTTGTAGTGTTCCGT	ref_2205_reverse	67	104	85	53	115	69	119	54	121	60
GCGGTATCGTGTTGAA	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTTCTCCAGGTCA	ref_2205_reverse	10	20	9	17	22	12	29	8	19	13
TGACGTGGTCTGTATG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCAAGGTAGCCCT	ref_2205_reverse	8	7	8	11	17	9	19	8	21	11
ACATGAATAATATCGT	ref_2205_reverse	16	41	27	18	40	19	36	20	37	25
GATGAAGGGTGAATTG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTTCATTGTGTCTCCT	ref_2205_reverse	13	10	8	10	26	15	29	6	26	14
CACCTTAATCTGGGTG	ref_2205_reverse	2	6	2	3	6	5	2	3	4	1
AAACTATCCGATTTTC	ref_2205_reverse	3	4	4	2	7	5	7	3	3	1
CACCTCGCGGTGCACT	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GTATTGAACTCTCTAG	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGCACCATCCCTA	ref_2205_reverse	3	7	3	6	8	7	16	4	16	3
TCTTATAAGTTGGTAT	ref_2205_reverse	14	12	13	11	17	10	15	12	25	5
CAACGTGATATCAATT	ref_2205_reverse	10	19	9	13	25	13	29	12	24	13
TCATTCGAACCGTAGC	ref_2205_reverse	0	0	0	0	0	0	0	0	0	0
TTTCATAGTCTTTTGC	ref_2205_reverse	3	11	7	6	10	3	11	5	5	1
ACCTGCTGTTTGGTAG	ref_2205_reverse	16	5	11	9	14	9	30	14	24	10
GTCGTGGTCAGCCCTT	alt_3640_fdr	6	4	6	4	3	0	5	3	8	8
AACGTGTTTGCCAGTA	alt_3640_fdr	47	74	46	51	90	55	67	61	77	63
GCGCCATTGTGTATTG	alt_3640_fdr	14	18	7	15	7	10	10	11	9	6
TGTAAACCGGCCGGAA	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
TTACATTAAACAAATA	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
ATGATGTCTATCATGC	alt_3640_fdr	22	36	23	24	22	17	34	14	38	15
AGGTCTTCTGAACTCA	alt_3640_fdr	14	25	24	22	20	19	32	17	27	14
TTTCGTTGTGTCATCA	alt_3640_fdr	8	6	5	6	7	6	6	6	5	7
ATACAATTTCCACTAG	alt_3640_fdr	11	7	16	14	12	6	18	10	26	10
TGGCTTCAGCGGTTGT	alt_3640_fdr	25	19	35	25	25	21	24	25	28	22
AGTTCGTCCCTCCCTA	alt_3640_fdr	5	9	16	11	8	5	25	7	11	10
AATCGCCGCGGCTCTA	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGAATTAGTCACT	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTGAAGGCTTAG	alt_3640_fdr	45	64	56	44	63	46	58	49	75	52
TTCGTGTACATAGCTT	alt_3640_fdr	16	31	22	17	40	21	22	19	31	22
ACTCTTGACGTTACCC	alt_3640_fdr	10	8	11	7	10	10	13	7	15	7
CAATGTGGACTAATTC	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
AATTATTTAAGAGCCC	alt_3640_fdr	25	16	24	21	22	19	23	11	20	14
GGTCTAAGCTCCAACC	alt_3640_fdr	28	49	46	26	41	24	59	29	56	29
TTGCTATGTCGTTCCT	alt_3640_fdr	0	2	3	1	2	5	2	1	0	0
ATCCTGGACGATGGGG	alt_3640_fdr	111	145	139	114	176	131	168	115	176	102
GAATTGCAACGAGCCA	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTAAATCGGGACA	alt_3640_fdr	7	13	9	3	10	5	9	5	10	9
CCTTGGTCAACGACCT	alt_3640_fdr	7	25	24	19	25	18	38	12	33	28
TGATAACGGGCGTTCA	alt_3640_fdr	31	38	47	40	36	30	50	45	51	25
TGTTAATCTATGGATG	alt_3640_fdr	4	6	2	4	6	11	1	2	4	4
AATCGTTTTGATCATT	alt_3640_fdr	54	79	79	50	73	69	84	47	99	47
TCAGTTCCCTGTTTCG	alt_3640_fdr	28	50	46	39	66	32	56	37	61	24
CGTGCTTTATTATGTT	alt_3640_fdr	4	7	3	0	4	4	6	4	3	4
AATGTTGCCCGGTGCC	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
CAACATTAAGTACTTA	alt_3640_fdr	7	23	11	13	17	6	20	16	15	12
TAGGACCTTCACAGGC	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCGAAAATTCTT	alt_3640_fdr	56	69	96	75	56	54	92	67	86	50
TTCGGCTTCACTTGGC	alt_3640_fdr	26	30	31	30	34	24	36	18	23	8
CTTGGGAAGGAAAATT	alt_3640_fdr	31	41	42	34	48	27	43	31	49	42
CTCACATTAGCCAGCT	alt_3640_fdr	9	8	8	4	4	3	8	4	4	7
TGTCTCCCTCTAGAAC	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
AAATTTTAGCAATTTC	alt_3640_fdr	76	53	61	55	63	62	58	59	67	51
TCTCTAATGGCTTCTT	alt_3640_fdr	17	20	25	34	23	25	21	22	29	22
ATTCATAATTCCATTC	alt_3640_fdr	0	1	2	0	3	1	4	3	2	0
TCTTCTGTGTCGTTGG	alt_3640_fdr	1	6	2	3	1	7	6	3	4	6
GGGCGAGCTTTGAATC	alt_3640_fdr	10	7	9	7	2	4	8	12	6	8
ACATGTTTAGTAAGGT	alt_3640_fdr	48	80	55	40	71	39	99	53	100	47
TGCAAATTTCTTTGCC	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGGCAAATAGCTT	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
TTTCACGCTGTTCCGC	alt_3640_fdr	36	39	51	45	31	26	29	27	49	27
TCGTGGCCTGATTCCG	alt_3640_fdr	15	33	43	23	36	36	18	19	35	29
AGTCCGTGCCATTCGT	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
GACTGACTCTAAGCTG	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCGCTATCTGGTC	alt_3640_fdr	38	55	46	27	47	29	41	19	46	34
AACCGTCCGCGATATT	alt_3640_fdr	1	3	5	1	3	1	2	1	1	0
TGTGTTGCCCATCTAC	alt_3640_fdr	67	90	80	61	92	60	119	53	102	47
TCTTGTACACGTGGAT	alt_3640_fdr	45	66	70	56	67	59	65	41	47	57
TGCTGGCTGCTTTTAC	alt_3640_fdr	9	5	7	6	6	3	4	6	2	6
ACGGGTGTTGTGCCCC	alt_3640_fdr	33	39	53	29	60	21	51	33	44	41
GTTCTTAGTGAGTTTC	alt_3640_fdr	0	0	0	0	0	0	0	1	0	0
TTATTCACCGTATCCT	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTTGCTTGCGTTA	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCAGTGGTACCGA	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
GGCGGATTGTTTCCGT	alt_3640_fdr	18	16	16	19	11	15	13	14	20	7
TGTATGCTGATTTACT	alt_3640_fdr	115	140	156	149	167	107	149	114	172	122
AGGGTGATTGCATGGA	alt_3640_fdr	1	5	12	6	7	3	6	4	5	5
GAGCCCGTGTGCAAAC	alt_3640_fdr	12	17	21	19	16	22	17	11	22	14
CGTAAGTGCAGAGGTC	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTCGTTGGGTTTT	alt_3640_fdr	4	6	2	6	10	4	11	7	4	6
ACTTGGATCGCGCGTG	alt_3640_fdr	13	19	14	6	23	9	19	16	24	9
TGTGTAGGCTATAGTA	alt_3640_fdr	20	20	20	13	20	19	27	23	33	8
TGCTTTTAGCCCAATT	alt_3640_fdr	4	12	5	13	15	5	6	9	21	5
GTACCAACAGCCGCCT	alt_3640_fdr	5	1	4	3	3	2	8	6	6	1
GTCTATATGTCATATA	alt_3640_fdr	5	7	6	5	17	4	8	6	9	10
TTCAGTGCTCCTTGCT	alt_3640_fdr	15	21	20	24	23	19	23	13	17	6
CCTTGAGTGAATCTGG	alt_3640_fdr	51	74	75	53	84	65	75	47	75	52
TCGATATCCGAACACG	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGTTAACGTTTCC	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCAGCGTGGTGCT	alt_3640_fdr	20	19	22	16	17	14	23	17	12	12
GTCCCTACACCCTAGT	alt_3640_fdr	0	0	0	0	0	0	0	0	0	0
ACATCCGTACCGGTCC	alt_3640_fdr	25	25	21	22	27	16	26	18	36	8
CTCCCTAATCGGTCAC	alt_3640_fdr	42	98	32	37	95	38	104	27	82	23
TTAGGCTTTTGACATG	alt_5758_new	135	243	169	122	247	128	247	94	278	107
TTAACCGCCCCCGCTA	alt_5758_new	21	56	22	29	65	22	57	24	46	26
TTTTGCATTTCTCCTT	alt_5758_new	3	8	9	4	10	6	19	0	23	3
CTGGCAGGGACTTATG	alt_5758_new	61	119	79	72	121	79	100	50	128	44
CTTTGTAGTTACTTGG	alt_5758_new	17	40	25	16	35	16	47	6	33	12
ATGATATTCATGTGTT	alt_5758_new	4	6	7	4	7	3	6	6	6	3
GGGTTCTTTAACCAGC	alt_5758_new	63	118	62	79	98	60	123	76	120	55
CCTCATTTGGATTTTC	alt_5758_new	23	31	36	24	40	20	46	18	46	12
AATTGTATACTCCGTC	alt_5758_new	0	0	0	0	0	0	0	0	0	0
GGGCTACACGCTCTCT	alt_5758_new	0	0	0	0	0	0	0	0	0	0
CGACAATAACTATATA	alt_5758_new	9	9	6	5	7	6	9	3	13	4
CCTGTTTCTCTGACCA	alt_5758_new	0	0	0	0	0	0	0	0	0	0
TTGGCACCATATTAGT	alt_5758_new	76	150	96	80	155	85	144	74	148	67
CCTCTGTGAATATCAC	alt_5758_new	1	5	3	8	5	4	1	4	6	0
CTTCTAGATCTGAGCT	alt_5758_new	0	0	0	0	0	0	0	0	0	0
GGCGTGTATGGTGGTA	alt_5758_new	0	0	0	0	0	0	0	0	0	0
TCAGTTCTAGAACAGT	alt_5758_new	0	0	0	0	0	0	0	0	0	0
GCCACTTCTGCCGGTG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
TCAAGGCATGTTTGCC	alt_5758_new	6	9	5	12	22	10	17	6	24	4
CTCGGCTAACCACCTG	alt_5758_new	22	38	27	27	58	25	64	20	39	29
GTTTGATCGGGATGAG	alt_5758_new	29	42	21	17	48	20	36	23	39	19
GGGTAAGTATGTGTAG	alt_5758_new	40	114	64	38	99	52	103	33	94	41
GGCATACTTTAGATAG	alt_5758_new	3	12	9	3	15	3	15	2	7	4
CCAAACGAATGCAGGT	alt_5758_new	13	67	21	11	37	15	44	10	44	27
CACCGTATTCCTACGT	alt_5758_new	20	38	22	15	36	10	49	16	45	18
GCTTCAATGTTGTCCC	alt_5758_new	26	58	31	32	56	36	62	35	66	31
TCGCCGGCCAATGTTT	alt_5758_new	34	107	39	39	129	37	136	35	129	35
TTCAGCAAGTGATCTG	alt_5758_new	16	24	19	19	27	19	50	13	43	21
GTAAGACAGTGGTTGA	alt_5758_new	14	36	20	15	32	13	33	13	36	10
TACAGATTGGGCCCTG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
AGGCTGAGTGCGGGGT	alt_5758_new	24	30	37	17	35	20	31	9	38	25
ACCACCCGGGTATTCG	alt_5758_new	35	91	62	50	115	50	84	40	111	44
GACCCATCGCCCACAC	alt_5758_new	0	0	0	0	0	0	0	0	0	0
TGAATGGTCTAAGGTT	alt_5758_new	7	6	4	5	1	1	5	3	10	3
TTCCCCATGGTTTGAT	alt_5758_new	12	15	15	8	18	8	22	8	16	12
AGGCCACAAGGAGATC	alt_5758_new	0	0	0	0	0	0	0	0	0	0
ATGCGACATGTGAACT	alt_5758_new	0	0	0	0	0	0	0	0	0	0
TGCCGGTACAAATGCG	alt_5758_new	26	39	38	20	46	22	44	18	38	20
TGAATCGGTCAGTTTG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
TTATGCCAAGTATATT	alt_5758_new	3	7	0	8	15	5	7	7	9	4
TGGGGTTCTAAGGAAT	alt_5758_new	8	27	8	6	12	14	11	9	14	13
TGTCTCATATAGTCTT	alt_5758_new	15	31	23	18	26	14	37	20	29	14
AGTTAATTCTTCGGGG	alt_5758_new	62	96	79	55	98	56	92	58	111	66
AAGCCGGTCTGGAACA	alt_5758_new	8	26	6	11	50	10	35	7	36	9
CCGTCTCTGCCCCTCG	alt_5758_new	13	22	20	16	24	9	18	11	11	18
TCAACACTGGGTGGTG	alt_5758_new	0	7	1	5	8	3	6	1	7	3
AATTAGTGCTTCTGGT	alt_5758_new	22	43	38	30	37	26	67	23	78	27
ACCCCTCAAGTGCATC	alt_5758_new	5	30	2	5	22	0	20	4	17	4
TATTGGCCGACTTCCG	alt_5758_new	3	5	2	1	5	1	2	1	1	1
CGTAATAGTTATACAA	alt_5758_new	18	27	21	15	33	19	26	19	22	11
GTTCAATATCAATTAG	alt_5758_new	9	28	13	9	19	8	24	12	20	5
CGACAGCTCTTTCCGT	alt_5758_new	8	22	13	9	22	11	15	11	21	7
GTCATGCAGTGACATG	alt_5758_new	6	4	0	0	2	1	6	1	13	5
TCTTGGCTCATTGCAC	alt_5758_new	18	49	16	15	57	18	50	11	46	9
AGTGCGTCAAATATAC	alt_5758_new	0	4	1	0	1	2	2	0	2	1
TCGCTGCCCTTATCCT	alt_5758_new	0	0	0	0	0	0	0	0	0	0
TTTGCTTCAGTTCTCG	alt_5758_new	12	25	20	14	28	6	28	16	37	13
GTCAATTCAAAGCGAC	alt_5758_new	11	23	10	9	17	9	14	8	5	4
TTAGCGTTCATAGTAG	alt_5758_new	0	3	0	1	1	0	2	0	5	2
GCTAAGGTGAGATCGG	alt_5758_new	28	54	31	31	53	21	47	41	49	24
CCCACGGGCAAAACTC	alt_5758_new	8	27	8	14	33	6	27	15	32	8
CAAATTCGTACAGTTC	alt_5758_new	0	0	0	0	0	0	0	0	0	0
AATATGAGTGTTGTCC	alt_5758_new	58	76	63	49	91	54	103	41	92	42
TTTTTAGGACGAGTCT	alt_5758_new	53	97	68	62	96	61	96	40	91	48
GAATAAGACTTGCCTT	alt_5758_new	12	24	11	18	29	8	19	7	22	8
GGTAGTTCCAGATATT	alt_5758_new	38	72	42	25	83	44	73	34	58	34
TAGGACATAACTCTCG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
AATCTAACGTAGCGGG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
GCGCGTTCTTTGAGTC	alt_5758_new	14	22	20	19	27	15	24	13	40	11
CGTTCCAGCTTACTAC	alt_5758_new	3	9	5	5	12	5	11	2	7	5
TGTAGCAATAGGTTGT	alt_5758_new	0	0	0	0	0	0	0	0	0	0
GTTGCCGGTACTCCTC	alt_5758_new	3	14	10	6	23	10	15	5	14	3
GCGCGCTTCTTGCTCA	alt_5758_new	102	238	123	109	245	110	236	89	257	103
AGTCCTCTCATGAAGC	alt_5758_new	28	34	26	29	37	39	37	20	37	19
GCCAGACCGCGAGCGG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
AGGTAAGTGTGGTTAG	alt_5758_new	18	29	23	20	39	19	41	21	36	16
GCCACATGCGGAGGTC	alt_5758_new	4	13	5	2	15	1	23	2	13	8
TCATCTTGCCAGATCA	alt_5758_new	4	6	7	4	5	5	9	3	6	5
CGGTTTTGCTTCACTG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
CTGGGGTATTTGCTCG	alt_5758_new	0	0	0	0	0	0	0	0	0	0
CCCCTTTGGTCTCCCA	alt_5758_new	6	20	9	9	17	4	21	8	22	10
TCCTGTAGTTTGCGCT	alt_5758_new	0	0	0	0	0	0	0	0	0	0
CAAGGGATTACAGCCA	alt_5758_new	3	5	0	5	5	3	8	2	3	4
TGTACTCGAGGGGATT	alt_6101_new	2	13	7	5	9	7	7	5	13	6
TGCACCGGAGTGAGCC	alt_6101_new	14	58	25	24	66	18	38	19	70	27
CCCTGCTTGGTGAAGT	alt_6101_new	3	2	6	6	9	5	5	7	8	0
AATCATTTTGCTTTCC	alt_6101_new	0	6	2	4	6	5	6	6	12	3
GAGCGTTTATTTGTCA	alt_6101_new	1	0	1	0	2	0	2	0	5	1
ATGGATAGTTAATCTG	alt_6101_new	161	236	195	147	236	150	244	130	271	134
TCATCTTCAGTTGTCC	alt_6101_new	78	77	90	79	108	65	106	81	102	54
TGTAATAGAGTCTAGA	alt_6101_new	0	0	0	0	0	0	0	0	0	0
CACGTCGAATTTCCGA	alt_6101_new	0	0	0	0	0	0	0	0	0	0
CGGGATTGTCTGTTTA	ref_6101_new	5	15	7	3	16	11	5	9	13	4
TGGCTCCCCGTTCACG	alt_6101_new	2	11	1	0	7	2	11	2	5	1
TACTTTCTGTCCGAGC	alt_6101_new	39	56	53	38	59	31	62	39	63	35
TGGAATACTTCCGTGT	alt_6101_new	76	124	100	91	144	70	112	80	143	68
ATGAAATCGTTTGAAC	alt_6101_new	0	0	0	0	0	0	0	0	0	0
TTCCCGACTCTTTGGT	alt_6101_new	0	0	0	0	0	0	0	0	0	0
AGATTCGAGCAACCGA	alt_6101_new	31	46	41	18	57	26	47	27	50	22
AGCCGCTTCCCTTCAT	alt_6101_new	0	0	0	0	0	0	0	0	0	0
CCTTTGTCACAGCCAA	alt_6101_new	8	24	10	13	33	7	22	10	28	5
GCGCTGTTCAGGGAAA	ref_6101_new	28	68	46	23	64	35	69	31	67	29
GCTTTATATTAAGTGA	alt_6101_new	115	121	120	112	145	103	139	108	147	76
TCTATCGGGACATTCA	alt_6101_new	0	0	0	0	0	0	0	0	0	0
CGGTTAGCGGGTTATC	alt_6101_new	3	7	6	8	11	5	2	4	8	3
ATTCCTAGCAGTATCC	alt_6101_new	2	12	4	6	6	2	13	5	23	5
CAACGCTCTCTATATT	alt_6101_new	1	4	0	2	4	2	2	3	3	3
ATGCGCTAGACGTTGC	alt_6101_new	45	60	54	45	60	51	68	38	88	39
TGGCTATGTGCACGGC	alt_6101_new	19	40	25	34	52	37	72	35	60	39
ACAACGGGCACGTCGA	alt_6101_new	89	178	127	95	174	102	183	87	165	85
CCCGGTCTGCTCCCCA	alt_6101_new	18	38	32	17	29	23	42	31	37	32
AGACCTAATCTTGTTT	alt_6101_new	57	72	53	48	81	53	66	41	89	53
CTGGTGTTATGTTGGT	alt_6101_new	37	62	29	24	45	23	57	35	50	17
GCGCACCACCTCCACC	alt_6101_new	0	0	0	0	0	0	0	0	0	0
GCTATTACTGTTGGTC	alt_6101_new	11	33	14	4	18	12	33	14	21	10
GCTGTACGGCTACATC	alt_6101_new	25	58	45	48	46	37	70	40	66	40
ATACACGGAGGCTGTC	alt_6101_new	42	63	53	51	67	56	81	51	88	29
TCTGCGCACCAGTAAT	alt_5816_new	43	69	47	30	61	27	87	40	72	32
ACGTATATCGTGCCGG	alt_5816_new	23	47	30	19	48	21	61	33	39	37
ATGGCACTGGTGCGGT	alt_5816_new	0	0	0	0	0	0	0	0	0	0
TATCCTTCTCTTAACG	alt_5816_new	24	26	17	18	27	18	29	21	27	15
TTCCACCTCGAGCCAA	alt_5816_new	93	176	98	91	145	68	172	87	154	76
CTAGCAGCCGGTAGGA	alt_5816_new	0	0	0	0	0	0	0	0	0	0
AATTTGGCTAAAGATG	alt_5816_new	28	64	28	39	43	32	68	40	83	27
TGGAGTCACCAGGGCT	alt_5816_new	12	8	8	5	11	10	10	4	10	6
ATTCTTTTAATACAGG	alt_5816_new	75	122	86	74	119	62	130	65	142	54
GTTAACTGGACTGTCC	alt_5816_new	7	12	7	6	13	6	11	4	18	8
AGCGTCCTCGCTATTC	alt_5816_new	4	6	4	5	7	7	9	6	3	4
TACGGTCCTGAATAGG	alt_5816_new	29	56	30	28	42	25	51	19	48	27
GCCTGACTCACGTATG	alt_5816_new	10	22	8	11	20	12	21	7	15	11
AGGAGATATTCTACCG	alt_5816_new	0	0	0	0	0	0	0	0	0	0
GCTTCAAGCAGGTACA	alt_5816_new	0	2	0	0	0	0	1	0	0	1
CTACTTTTTTTAGGTT	alt_5816_new	6	16	11	7	17	8	8	7	14	5
GTCTAGTAGAGATGGA	alt_5816_new	0	0	0	0	0	0	0	0	0	0
CGTGCACCTGGTTATT	alt_5816_new	2	3	0	8	2	4	7	0	0	2
CGGTATGCCATGAAGT	alt_5816_new	23	36	25	20	45	26	44	20	39	22
GAGGCATGCCGGTAAT	alt_5816_new	12	14	19	17	25	16	14	9	21	17
TAGCTTCTTGGGCAAA	alt_5816_new	9	15	13	19	15	8	15	18	15	9
CTGCGTTTCTCAATCC	alt_5816_new	31	47	19	21	39	13	48	22	46	12
AGACCTCAGACGCTTT	alt_5816_new	0	0	0	0	0	0	0	0	0	0
CGTTGTCCGTTAGATA	alt_5816_new	31	32	16	26	32	19	35	7	27	20
CGGCATTAGAACCGTT	alt_5816_new	16	30	29	13	40	16	34	16	26	23
CCTGATGAGCCCGTCT	alt_5816_new	7	15	15	16	12	13	20	5	16	5
GTATTTATCTGTTACT	alt_5816_new	33	33	26	18	46	30	46	29	44	14
TTTTGGACACATGTCG	alt_5816_new	40	72	42	34	55	29	63	41	98	37
CAGCTTTTAACCGATA	alt_5816_new	14	11	18	14	24	11	21	18	15	11
GGTGTATGGCCTTAAT	alt_5816_new	0	0	0	0	0	0	0	0	0	0
CGCACATACGTCTTTT	ref_5816_new	20	40	14	14	29	14	22	15	37	11
CCCGTAATCGTTAGTT	alt_5816_new	52	58	34	48	74	36	72	43	69	37
TGACGAATTGCAAGAC	alt_5816_new	7	4	16	9	9	11	13	3	22	2
ATACCTTGGCAGGGAT	alt_5816_new	13	20	12	15	19	12	19	14	12	9
CGAGCACAATATTTGG	alt_5816_new	37	68	51	44	59	50	70	45	65	42
ATTTTCTTTTGTCCAA	alt_5816_new	0	0	0	0	0	0	0	0	0	0
GTTTCTGCCTTTGCAT	alt_5816_new	20	37	30	26	41	21	34	19	39	17
AGCGCGTTTGTGTCGG	ref_5816_new	397	657	427	373	632	380	655	312	718	341
TAATATGGGCTGGCAA	alt_5816_new	11	22	13	13	20	10	12	6	17	10
TGTGCTATAGTTCTTG	alt_5816_new	32	65	50	55	74	40	89	40	97	48
ATGCTCTACGACCAGC	alt_5816_new	0	0	0	0	0	0	0	0	0	0
CAGATGTGACGGTCCC	alt_5816_new	0	4	2	3	5	2	9	4	6	3
ATAATTGTACCTAGCA	alt_5816_new	34	79	67	50	99	52	80	47	104	52
GTCAATCTTCGACTCA	alt_5816_new	5	5	3	4	5	2	6	10	3	3
TTCTGTCAGCCTATCC	alt_5816_new	24	42	27	19	43	23	45	16	53	21
ACCGCCTCTAATTATT	alt_5816_new	91	136	80	95	143	88	164	90	168	71
CGTTGTCTTACCCAGC	alt_5816_new	61	170	77	78	121	82	134	60	154	53
GATGTTTTAATCATTG	alt_5816_new	28	44	32	50	38	25	45	20	44	20
AGTTGGAGTGCTCTGT	alt_5816_new	1	3	0	3	4	3	3	2	5	0
TATGATGCCGTGCTTA	alt_5816_new	5	12	7	9	18	8	12	6	15	5
TGATGGATCACCGTGG	alt_5816_new	3	4	7	2	3	7	3	5	8	3
ACGCCTCTATGGAATG	alt_5816_new	16	15	16	8	23	17	21	12	25	13
TAACTGTTACAGCGGT	alt_5816_new	9	10	11	9	11	4	8	13	13	7
TAGTTAGTCGTCAGTT	alt_5816_new	9	8	11	10	10	12	14	4	7	8
CCTCCATCCTTACTCA	alt_5816_new	10	89	18	6	87	7	83	12	87	7
GCCAGGTGATTCTTGA	alt_5816_new	0	0	0	0	0	0	0	0	0	0
CATACGGCTTAGGTAT	alt_5816_new	111	181	135	121	155	111	218	116	210	97
TGGATGTTGGACTCCT	alt_5816_new	10	19	17	11	41	9	18	13	26	14
CCTGATTCGCACAAAA	alt_5816_new	14	30	25	17	31	11	34	21	33	16
TCCGGGGTGCAGGACA	alt_5816_new	8	6	9	4	4	3	12	6	13	3
ACGTTACACCATGGCC	alt_5816_new	0	0	0	0	0	0	0	0	0	0
TTCCGGCGCCTATGAC	alt_5816_new	7	7	2	1	17	1	6	1	8	2
CATTGCTAGCATTGAG	alt_5816_new	40	57	44	38	61	30	92	25	61	33
AGTTATTGTTCATAAG	alt_5816_new	40	64	57	45	86	42	69	51	75	50
GTACCCATATGCACGC	alt_5816_new	0	0	0	0	0	0	0	0	0	0
GATAGTTCTCAGCTTA	alt_5816_new	61	94	75	60	112	48	110	67	114	52
CCGTACATATCCTGTG	alt_5816_new	0	0	0	0	0	0	0	0	0	0
GACCCGAGCACGTCAC	alt_5816_new	14	27	33	12	28	14	24	17	30	14
TTTCGCCGGATCCTCT	alt_5816_new	90	101	84	70	70	97	123	56	145	69
TAGGCAATGCTCGAAA	alt_5816_new	0	0	0	0	0	0	0	0	0	0
GGAAATTATGATGGGG	alt_5816_new	5	12	3	4	14	6	10	6	9	4
TAATTACGGTGCCTTA	alt_5816_new	5	7	4	7	13	9	10	6	16	5
CTCCGGTGCTCGCTCT	alt_5816_new	17	31	20	15	33	13	22	18	21	13
CAATATGAATCACACT	alt_5816_new	29	55	35	31	41	29	50	28	51	37
CCTCTCGATGCTACCC	alt_5816_new	3	41	7	7	37	9	41	5	62	5
TCCCGACCGGCGCACT	alt_5816_new	0	0	0	0	0	0	0	0	0	0
CAACTAGGGTTTGGTA	alt_5816_new	27	64	27	31	48	22	45	16	57	17
CCTTATATCAGTAATT	alt_5816_new	9	34	11	9	43	9	43	20	53	13
TGTGTGTTGGCGTCCT	alt_5816_new	36	61	52	37	73	61	71	49	58	26
CGCCGTTTGGTACTCC	alt_5816_new	151	249	189	151	272	121	272	145	302	117
TACTTCCAGACCGATC	alt_5816_new	49	111	77	67	116	54	152	64	126	43
AGTGTACTCAAGATTT	alt_5816_new	100	157	102	87	159	74	137	96	160	53
AACATTGCGCGCGAGC	alt_5816_new	19	30	29	33	38	17	22	23	34	18
CCGATGCCTTCACCTT	alt_5816_new	40	86	70	41	90	37	86	37	96	59
AGTACTGGTCCTGATA	alt_5816_new	24	47	35	20	50	25	50	22	56	21
AGCGCGTCTGTGTCGG	alt_5816_new	1	0	0	0	0	0	0	1	0	0
ACTGTGGCCATCTGGC	alt_5816_new	28	49	39	24	67	39	46	36	83	37
CTTCTGTTTGCTCTCA	alt_5816_new	41	98	64	54	94	44	147	41	132	54
GTTACCTGTTCATTTT	alt_5816_new	21	40	27	25	49	16	40	21	53	26
TCGGTACGAACTATGT	ref_1752_missing	14	30	15	16	20	9	29	19	31	17
TCGTACTCGAGTTACT	ref_1752_missing	10	30	14	15	23	19	18	17	16	10
ACGCTGAGGGTTTTAG	ref_1752_missing	101	172	106	85	191	96	169	89	197	84
TGAGCCATACCTAACG	ref_1752_missing	15	19	23	21	27	11	27	13	31	13
ATACAACCATGGGATA	ref_1752_missing	87	139	82	58	146	67	127	68	144	64
CGTTCACCCTAACCTT	ref_1752_missing	9	14	4	3	11	4	11	3	11	8
GGTCATATCGGCCGCC	ref_1752_missing	79	152	86	70	112	67	140	71	112	56
CACGCGCTGTGGAACC	ref_1752_missing	9	19	11	13	10	6	19	9	17	7
AACATGGCGCGTAGGC	ref_1752_missing	19	17	21	21	28	17	28	15	20	20
GAAGTTTTAGCACCAG	ref_1752_missing	3	12	4	5	9	6	7	2	10	4
TTCCAAGTTTTGGGGG	ref_1752_missing	9	4	4	2	7	1	15	3	10	3
AATTTCCTGTATTGGG	ref_1752_missing	37	96	35	56	78	43	88	29	84	30
ATAGGTTGGTCAGTAG	ref_1752_missing	15	35	25	16	29	15	36	13	37	18
GTTTAACGTTGGTCGC	ref_1752_missing	0	0	0	0	0	0	0	0	0	0
TGTTTATAAGCATAGA	ref_1752_missing	4	21	7	7	16	6	14	6	12	7
GCTAAAACCTGTTCAC	ref_1752_missing	14	32	22	23	34	19	32	13	39	19
CCCGGTAACGACGAGT	ref_1752_missing	9	43	12	6	65	5	48	6	39	3
ATAGGACAGTCTGGGT	ref_1752_missing	0	0	0	0	0	0	0	0	0	0
CACAGGACGCTTTCAG	ref_1752_missing	29	77	60	37	88	39	67	33	70	37
AGGGCTTACATAATAC	ref_1752_missing	17	33	15	13	25	16	31	19	27	6
GTTTAGCCTGTTGTTC	ref_1752_missing	84	200	110	76	199	99	215	72	208	90
GATGTCATGATTCGGG	ref_1752_missing	0	0	0	0	0	0	0	0	0	0
TCGGGTTTTTAGCCTG	ref_1752_missing	10	9	14	10	28	14	29	13	24	9
GGCAAGGCTTTTGTAT	ref_1752_missing	0	0	0	0	0	0	0	0	0	0
CTCTAGTTAGTTTTAG	ref_1752_missing	12	29	21	14	50	18	25	17	31	11
GTTTTGCGAGCCGAGG	ref_1752_missing	25	51	20	26	54	21	73	26	72	20
CCTAATCTGATCGCTA	ref_1752_missing	0	0	0	0	0	0	0	0	0	0
TAGGGTGGGCGCGTAG	alt_298_reverse	43	43	42	36	55	46	34	43	47	43
TTTGCCACAAATTCTT	alt_298_reverse	35	35	31	23	44	24	43	25	26	19
GATCCGCCCCTTCTTA	alt_298_reverse	13	28	9	14	22	12	8	16	30	16
AGTCAGTCTGGGTGTG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
ACATCGAAGGAGAGCA	alt_298_reverse	22	27	22	12	13	17	19	16	26	14
GCCGCGGCCTCGCTTA	alt_298_reverse	62	63	63	45	69	58	79	49	57	46
GTCACTTGATCTAACG	alt_298_reverse	12	22	13	12	18	10	10	13	18	13
TATTTTTATAATGGAG	alt_298_reverse	19	26	33	24	29	25	28	25	24	26
TGTCCGTTGTTATGGT	alt_298_reverse	10	15	13	5	12	7	12	6	10	7
CACATGGTGAGCCCGG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CTAACACGGAGCATCT	alt_298_reverse	20	29	48	23	43	21	29	17	31	30
GTTACGATCGCTTACA	alt_298_reverse	6	13	15	11	23	15	14	11	22	10
TCAAGGACACGGTTTA	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CCTTATGCCTCCTGAT	alt_298_reverse	201	161	201	159	169	168	190	129	174	136
GTAGTCTATGCGTGCA	alt_298_reverse	62	85	58	64	92	50	72	48	89	39
ATGCGATGTATTCCTA	alt_298_reverse	4	2	7	7	6	5	3	4	3	4
AACCAGAGTTTGTTCT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
TGAATCGCCCGTGATC	alt_298_reverse	7	12	9	8	14	8	13	8	14	14
CCGCTTTCCACCCGGG	alt_298_reverse	19	20	25	19	26	15	17	16	24	10
TTTAAATTATGACTCG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
TCCTGGCTTTGATTTC	alt_298_reverse	7	10	22	10	14	16	11	8	9	14
GGCAGCCTGACCGCGT	alt_298_reverse	9	16	13	13	16	12	27	14	28	11
TCTACGTTGATTTCGT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CGGGCTCGCATCGATT	alt_298_reverse	4	3	5	5	7	4	2	2	4	5
GTATAGCTGATTGTCC	alt_298_reverse	11	13	15	5	21	3	11	3	10	7
CCCAGAAAGACGTTTA	alt_298_reverse	35	56	61	44	48	45	47	54	42	38
CATAGACGTATAATCA	alt_298_reverse	11	26	15	20	12	12	18	13	18	14
TGCGGTCTGATGTAAA	alt_298_reverse	84	96	67	90	96	72	96	60	96	61
TCTTCGGGTTAGCTTC	alt_298_reverse	33	36	40	37	41	28	36	33	52	38
CAATGATCAGCTCACC	alt_298_reverse	18	29	28	30	36	13	33	23	25	20
CACTTGAGCCAGTTAT	alt_298_reverse	1	1	0	0	0	1	0	0	1	1
GGCAAGTATCGGGACA	alt_298_reverse	17	17	9	18	26	18	17	12	28	16
CATACCTCTGGATCGT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CGAGAGTGATTATTAA	alt_298_reverse	9	8	6	8	12	8	12	7	5	7
TCTTTGTCTGCTCCCG	alt_298_reverse	17	16	11	20	14	13	17	15	16	10
ATACCTTCATTTTCGG	alt_298_reverse	16	15	16	17	14	15	15	14	28	20
CAATGGCCTGACCTCC	alt_298_reverse	17	26	24	14	21	30	15	9	20	16
GTATCCCTTTGCGCTT	alt_298_reverse	73	138	132	88	152	101	172	69	144	102
GTTCCCACATACTCGG	alt_298_reverse	28	41	45	33	48	32	51	33	38	28
AGGGTCACTACCTACA	alt_298_reverse	8	5	14	6	6	4	7	10	7	2
TAGGTTCCCCTCCTTG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTCGCCTAATTTT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCGGTTTGGTGCT	alt_298_reverse	11	17	10	13	8	9	14	8	18	14
TTTAGTCATCTAGCTC	alt_298_reverse	73	76	100	81	92	78	80	64	116	66
AGACACACTCGCGCGC	alt_298_reverse	4	9	8	7	11	5	3	3	1	9
CTCAGCTCGTGAAAGT	alt_298_reverse	2	29	2	2	17	2	13	3	12	4
AGATCAGGTCCGTGTT	alt_298_reverse	34	49	52	40	51	40	48	42	39	33
TCGAGTAAAGATGCCC	alt_298_reverse	9	13	15	5	7	10	7	10	9	9
TTTCTTCCTACTGGGA	alt_298_reverse	17	9	18	15	11	14	17	11	12	11
CTTTCTCTGAATGTCC	alt_298_reverse	23	25	32	20	30	24	29	20	30	23
TAGGGTAAGATAACGT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CACTTTTAGCATACGC	alt_298_reverse	45	61	60	51	71	50	51	60	82	55
ATCTAGGCGTTTGAAC	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CCTATAGGCTCACCAA	alt_298_reverse	27	26	27	39	40	21	48	25	42	24
TCATCTGATTCCGATT	alt_298_reverse	34	32	35	34	37	38	56	40	39	33
ACTTACGCCGAGCTAT	alt_298_reverse	18	15	18	26	25	14	25	17	23	18
CAATGTCGACATCATT	alt_298_reverse	20	27	32	38	39	19	24	30	32	20
ATCGATTCTAGAACAG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAAGGTAAGGGGT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
TGACTCCACGTGTATT	alt_298_reverse	31	39	40	44	46	33	35	13	43	42
TTAACGTAATCCCGTA	alt_298_reverse	23	20	30	18	25	26	21	23	24	24
CCTCACCCTGTACATG	alt_298_reverse	20	34	24	35	43	23	42	22	41	15
CTCATTCGAGCAGTTC	alt_298_reverse	1	2	0	0	0	0	3	0	1	0
GGCCGATTTCGGGGTT	alt_298_reverse	53	56	68	61	47	69	50	48	47	54
TCCGACGTGTTAAGTG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
TCTCACTTGACCGAAT	alt_298_reverse	2	3	3	1	4	1	2	1	1	3
AGTTTATCATCGCATT	alt_298_reverse	44	39	67	48	58	72	51	46	45	33
TTTCTAAGCCGGGCTT	alt_298_reverse	23	33	27	28	22	36	36	20	36	25
ATTAACCCTTGATAAC	alt_298_reverse	7	1	14	5	4	4	18	8	15	10
TGCTCGAAAACCCGCA	alt_298_reverse	29	28	37	36	36	21	29	36	34	22
GTAACATTGTTATACG	alt_298_reverse	7	10	9	9	6	4	13	6	6	9
ATGCTCCTCTTTAAAA	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
TTACCTGGTCTGGTCT	alt_298_reverse	51	84	57	49	76	38	82	49	95	56
TCCTTTTACCTGTTAC	alt_298_reverse	2	1	0	0	1	0	2	0	1	0
AGACCGATCCCCTTGT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CATTTCCTTGGGCCAT	alt_298_reverse	11	4	7	8	3	5	2	6	12	7
CTCCGACGTATCGTGC	alt_298_reverse	15	56	24	15	46	24	52	8	54	12
CGGTGGCCCATCTTGT	alt_298_reverse	6	12	10	18	9	11	13	9	21	8
GGATATTTAATCGAGG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
AGAGCCCTGGCTTTCC	alt_298_reverse	20	16	22	14	17	22	19	13	14	12
GGTCCGCTACACCGAT	alt_298_reverse	23	21	25	24	32	18	36	22	22	19
GAGCTAAACTGGGCAG	alt_298_reverse	11	24	13	10	14	15	19	4	22	12
TGCTCCATCATCCGAA	alt_298_reverse	11	16	18	10	14	6	18	8	18	16
CTCGAAACGGTTGTAC	alt_298_reverse	18	11	25	16	24	14	25	15	23	12
CAAGATAGGGGAGTGC	alt_298_reverse	31	25	31	20	32	26	38	18	29	25
ACCATTCTGGTCTGCG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
GATGGTGCATCGGATA	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CACAGTACGAGGAACA	alt_298_reverse	38	65	67	47	59	24	59	54	66	36
TCCTTGCCCCGGCTTG	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CCGGATCTTGATTGGA	alt_298_reverse	11	24	18	18	31	13	26	17	13	12
CGCGGTCCTTCGTCCG	alt_298_reverse	6	18	17	7	40	5	36	5	46	12
GCCTGAGCGAGCAACC	alt_298_reverse	32	40	29	24	25	27	35	30	27	28
TTTAGAAGGTTAGTAT	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
GCACCCGTTTTCGGGC	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
CTGATGAGAGAGCGCA	alt_298_reverse	22	20	23	21	21	19	35	25	34	23
ATGGACCGGCGTCGAA	alt_298_reverse	12	11	13	11	16	15	14	14	11	9
TGCCGGTGCGCTCCGA	alt_298_reverse	7	12	8	15	11	10	24	4	16	11
GGTAAATTAGCATTTG	alt_298_reverse	49	72	66	34	61	52	59	45	70	54
TCCCGCTTTGCGCCCT	alt_298_reverse	19	18	25	21	31	20	22	24	29	26
AGCCCCTCCCTTTGAG	alt_298_reverse	11	27	16	19	16	5	11	15	22	22
TCTTCACACTCCAAGC	alt_298_reverse	4	7	8	4	5	2	10	0	4	0
ACTTCTAAGACAACCC	alt_298_reverse	3	17	4	4	6	7	11	5	15	6
GACCAGAATGTCTGTT	alt_298_reverse	12	16	19	11	13	13	15	19	23	11
TTCGAGTTTGATTCAC	alt_298_reverse	23	30	55	36	42	30	48	27	35	31
ACCGCACGCGCCGGGA	alt_298_reverse	0	1	0	1	0	0	0	0	0	2
GACTATCAAACTCTAT	alt_298_reverse	61	72	67	60	85	66	82	58	78	52
GTCCCGTGAGAGCCAA	alt_298_reverse	2	6	3	6	9	1	4	6	6	5
TGCACTGCTGAAATGC	alt_298_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGACTCTATAAGA	alt_298_reverse	1	1	0	3	3	3	3	1	1	0
TGTCAGACAGCCATGG	alt_298_reverse	20	24	31	25	36	14	45	24	43	23
CGTAGGGCTTTTCTCC	alt_298_reverse	27	35	37	38	33	42	39	39	57	32
CTTACGAATGCGAACG	alt_298_reverse	24	18	23	14	23	13	34	11	27	12
AGTCGGCCTCCGTTTT	alt_298_reverse	61	90	89	80	98	75	90	68	80	56
AATGTGGTTCTTTTAG	ref_588_reverse	83	119	100	82	80	99	124	87	132	82
TGCCCGCGAGTACAAT	ref_588_reverse	3	7	3	1	6	5	1	3	7	4
GATCTGACTATTGCGT	ref_588_reverse	13	23	10	9	12	7	13	10	7	12
TCGGTGTTCGGACCGG	ref_588_reverse	2	5	8	8	9	7	4	6	8	5
TTAGGCCCCTTCACGA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GTGACTCCAGACAGAT	ref_588_reverse	4	8	9	5	3	3	6	3	3	3
GGTTAGCACGTTGCTT	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGATCTTTTACGT	ref_588_reverse	16	24	32	16	31	20	26	21	26	15
TCACGTCTTTTCTCTC	ref_588_reverse	17	26	24	24	22	16	26	18	29	13
TAGCCTGTTCCTAGCG	ref_588_reverse	13	28	12	16	16	11	10	12	20	7
GACTTGGCGGCTGACA	ref_588_reverse	18	25	28	15	30	16	19	10	16	13
TCATTTATCCAGCACT	ref_588_reverse	4	6	8	4	6	8	8	12	3	6
GTTCGATGTATCACTC	ref_588_reverse	6	11	13	10	12	11	10	5	8	6
GTTTTTTGAGCTTTGC	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGCGTAACATTAT	ref_588_reverse	80	86	88	84	99	62	87	73	98	70
TTGGTTTCTTCGCCCC	ref_588_reverse	107	115	124	114	123	101	108	89	123	82
CTGCCATGAGTACTCT	ref_588_reverse	7	37	13	13	10	10	28	13	20	9
CGAACATGGTGTTCAA	ref_588_reverse	24	47	46	32	44	33	43	30	47	41
TTAAGGACCTTGTAAA	ref_588_reverse	33	37	44	28	46	28	37	29	33	38
GCGGTATGCTTTGCTT	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
TCGATTTAATTACTGG	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTATGCTAATTTC	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GCATCATGATGTGATC	ref_588_reverse	98	98	121	99	107	102	120	76	93	89
TCAACATCTATTTTTG	ref_588_reverse	21	16	34	27	27	22	19	18	28	13
TAAGATTCGCGGGATA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
AAGGGTTCTATATCAG	ref_588_reverse	19	18	13	12	13	9	10	16	13	9
GACTCAACGGGTTATT	ref_588_reverse	66	68	68	57	63	45	59	34	79	45
AATTATCATGGGGCAA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
TGATCGATGCTCCGGA	ref_588_reverse	39	49	48	55	57	54	60	43	48	43
AGTAAGCTAGATCTGC	ref_588_reverse	54	43	44	38	60	36	64	36	49	26
ACAAATGCTGCGATTG	ref_588_reverse	15	16	22	21	31	18	18	10	19	6
AACTCCGTGTCTCCAT	ref_588_reverse	21	31	30	26	33	29	34	35	22	25
ATTAGCTTTGCTAGAG	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCTAGGGACCGTT	ref_588_reverse	8	13	7	3	16	7	9	7	7	4
GTCCCGTATGTAACCC	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
TCAATGCCATTTGCTA	ref_588_reverse	40	56	38	33	38	42	42	28	46	25
GTTTAACGTACGTCAC	ref_588_reverse	20	39	26	27	38	27	55	28	34	32
CCTTCTATAAAGTCTT	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
ACGGGAGAGCGGTCTG	ref_588_reverse	75	72	57	60	69	56	67	59	91	52
AGTAGCTAGGCGTTGT	ref_588_reverse	45	52	41	49	49	34	53	29	57	34
AGTTTGCGACTAATCG	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCCTCTGCCTCGA	ref_588_reverse	15	54	17	23	40	14	43	17	55	18
ACCGGCAATAGTCACG	ref_588_reverse	14	25	33	19	35	20	28	24	31	13
TTGTTGTCTGTAGGCA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTACTTCGCAGCA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTTGGCCAAGTTC	ref_588_reverse	25	17	30	12	21	22	24	26	37	14
TAGATGTTTCACGGAC	ref_588_reverse	43	63	39	48	58	32	57	43	52	39
ATCATCATTGGATGCG	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTTTTGTTTTCG	ref_588_reverse	39	36	34	39	19	37	37	34	30	28
GCATGGTGCAATCTGC	ref_588_reverse	9	7	11	6	2	13	12	6	13	8
CTCAGGTAACTATGGC	ref_588_reverse	20	27	11	25	19	8	15	11	21	10
CGTGACCTTCCTATGC	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTCAGGTGCCGAG	ref_588_reverse	12	26	30	22	26	24	27	35	27	21
TCGTCCTTCATCAGCC	ref_588_reverse	41	48	44	35	41	24	53	30	42	32
TTTAGAGGCAAGCGTA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
CAACATGCGTCAGTCA	ref_588_reverse	17	24	33	30	33	26	28	28	31	28
GTGGTCACATTTAGAT	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GTAAAGGCGGGTTGGT	ref_588_reverse	23	17	26	20	16	23	21	13	15	18
TCGGGTTTTGAAATGG	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
TGAGACTGTTGGTGTA	ref_588_reverse	3	1	0	2	1	2	0	0	1	3
TATTGATGTAAAGGTG	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTGCGTCCGTAAG	ref_588_reverse	14	18	13	18	22	15	21	10	21	10
TTGCGTGGATTTTTTG	ref_588_reverse	39	38	40	48	45	27	36	32	44	28
TACCGGTTACGGTGTT	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
CCTGATAGGTTCAATA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
TATCACCCCCAGTCCT	ref_588_reverse	6	11	7	8	5	8	7	8	4	12
CCTTAGCGCACACAAT	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
CTAAGCTGAGCATCAA	ref_588_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGATGGCCAATGT	ref_588_reverse	16	10	18	13	15	14	19	14	18	9
AGGCTTGATCACCAAA	ref_588_reverse	7	10	2	6	10	9	7	7	6	5
CGGTCCAACTATACCC	ref_588_reverse	24	31	31	15	32	19	36	17	28	14
TGCTGCTTCCAGATTA	ref_588_reverse	34	40	35	31	21	37	33	31	31	34
CTCCGTGAGAGTTCAT	alt_6019_new	45	52	55	66	52	42	53	39	71	37
GATTGTGTTCAAATAC	alt_6019_new	15	25	13	9	21	10	17	14	23	19
TTTTGTACTCCGCCAG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
ACAAATACATCTGAAT	alt_6019_new	5	5	2	2	5	4	4	2	5	2
GGCCGTGAGGCAATAA	alt_6019_new	69	62	73	63	48	51	73	50	84	64
TTCGAGGTACATACTC	alt_6019_new	23	15	11	7	15	9	24	7	20	9
TCGCTCCTACATTATC	alt_6019_new	14	12	10	13	23	10	21	3	20	10
CTACAAATTGGCCGTG	alt_6019_new	0	0	0	1	1	0	1	1	1	0
ACATCCTCCCCATCTA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
GCTCCTTCGGATGAAG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TCCTGTACCTGTGTAC	alt_6019_new	31	40	45	23	39	30	45	24	50	24
CTTTAACGCGATTAAT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TGTATAAGGCTGTAAC	alt_6019_new	29	41	33	36	34	28	34	22	37	23
CTTAGGTGTTTATGGA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
ATCTCTGGAATCGCAG	alt_6019_new	11	10	12	5	15	11	10	8	12	8
TCTGCGCTTGTGGTTA	alt_6019_new	38	45	47	41	60	32	47	26	49	16
TCGATATTTTACCACC	alt_6019_new	47	72	57	60	72	56	76	52	78	43
TGAAGTTCGTCCACAT	alt_6019_new	33	43	46	32	38	35	43	38	52	39
AATTCAGGAGGCGATC	alt_6019_new	250	320	305	274	312	260	307	222	325	210
TTATTCCATTATCGAA	alt_6019_new	9	16	11	10	14	11	12	8	5	9
TGGTGCTCGCCCACCA	alt_6019_new	8	13	13	9	22	14	10	7	22	8
ATGGATACTCTTTCCT	alt_6019_new	34	29	38	24	55	30	29	23	46	28
AGGTTCTCATCTTGGC	alt_6019_new	6	5	9	8	4	6	6	5	8	5
ACACATCGGCAAAATT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TAAACTGTCCCGGGTA	alt_6019_new	43	41	39	42	42	33	56	34	42	33
ATGGGAAACAATGCAA	alt_6019_new	22	13	20	17	18	10	16	7	19	10
TAGGATATTATATTCA	alt_6019_new	8	5	9	5	9	10	12	6	16	10
ATCTACTTCTTGTCTC	alt_6019_new	0	0	0	0	0	0	0	0	0	0
GCTACTTGTCTCTGAC	alt_6019_new	22	29	22	31	26	20	25	21	40	25
CCTCACTTAATATATA	alt_6019_new	18	24	34	21	32	16	33	14	46	9
TTAAGATAGTTGCCTA	alt_6019_new	22	34	40	30	27	30	25	25	48	22
TTGCTCTACTTTCTAG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TGTGAAAATATTCACA	alt_6019_new	78	106	109	109	116	91	99	74	120	97
GCTAGGCAAGTGGTCC	alt_6019_new	0	0	0	0	0	0	0	0	0	0
AAACGCTTACCGCCAG	alt_6019_new	15	25	24	15	34	14	26	20	40	18
AGTTTATAGCGCGCCC	alt_6019_new	5	9	8	6	5	5	3	8	10	2
AGCCGCGCAGTCCTTT	alt_6019_new	9	8	10	12	11	7	15	6	12	12
CACCTGGTTTGTGTTT	alt_6019_new	8	0	3	1	15	7	8	5	7	2
GTATGATGGACTATTT	alt_6019_new	18	22	27	31	27	10	31	22	27	19
CTTATTCTCAAAAGAG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TCGCATATGGACCTGT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
AATCCATGGTTGTCTG	alt_6019_new	31	36	48	27	35	40	45	29	50	25
AGCCGCTTAGTTTTAG	alt_6019_new	5	14	3	6	14	5	12	5	16	6
GTCCGCAGAATTTGGC	alt_6019_new	122	143	127	97	152	79	151	108	143	77
TTGTTGTTCTGTTTTA	alt_6019_new	12	18	18	13	12	12	12	17	19	12
GAGTACTCCCCTCCAC	alt_6019_new	1	9	4	4	5	5	8	3	11	4
ACTGTCGATGGCATTA	alt_6019_new	16	8	12	6	12	9	16	6	10	12
GGTCCTACTATGCGTG	alt_6019_new	31	75	61	39	74	52	57	49	44	40
GTGCACTTCATTCTTT	alt_6019_new	83	100	122	95	101	62	83	90	122	76
TGCTGCTGTTTGCTCG	alt_6019_new	54	80	82	67	108	60	98	50	79	64
GAACTAACGAATCGGG	alt_6019_new	7	10	16	12	15	12	23	11	17	15
CCTTCAAGTTAATTCT	alt_6019_new	15	21	26	11	23	15	26	11	30	12
ATCGTTGTGCTATCCC	alt_6019_new	88	124	112	97	143	91	137	89	142	101
CTCGAATTCGTGCATA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
GATCTCGGCCTCGTTC	alt_6019_new	34	25	20	26	24	25	18	11	26	22
TAACATTGTATCTAAG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TCGTTACACTATGCAC	alt_6019_new	102	115	90	62	90	68	142	63	146	76
TTTATGTTCATTAGTT	alt_6019_new	13	10	8	4	13	11	8	7	11	6
CGAGCGTGATTTTGCG	alt_6019_new	26	61	49	38	51	46	47	50	52	37
TATGAGGCATCGGGAC	alt_6019_new	22	37	32	32	35	34	33	21	48	37
CCAGGTTTATACCAGC	alt_6019_new	2	9	5	3	6	0	5	1	5	4
ACTGCCCCTCTAAAGT	alt_6019_new	31	106	68	41	72	54	84	48	92	55
AACCGGGCACAAGCCA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
GAATATTGCATTATGC	alt_6019_new	6	21	12	16	15	18	17	11	19	13
ACGAGGTTGCGTCAGG	alt_6019_new	46	57	65	55	62	39	79	54	73	62
GTGTTGTGGGTTCTAC	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTCCTTCCAGG	alt_6019_new	102	128	121	87	123	76	114	97	134	78
CGTAATGTCCTGCAAT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
AATTAGAGCGCCCAAG	alt_6019_new	10	14	19	17	28	16	11	8	17	13
CTAGCAATGCTGTCGT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
ACATAGCTGGCTAGAT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
CCGACCTCTTTAATAC	alt_6019_new	22	91	55	47	72	40	84	49	103	45
AAACATTCCCCCTGTT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
CCTTTTGAATTTAATA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
CTTAGGCGTGACCTTG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
ACCCGGCACGCTGACG	alt_6019_new	51	67	76	53	66	56	73	62	79	60
CAGTTCGTGCTCAGAT	alt_6019_new	9	9	3	9	10	12	19	9	21	11
CTGTCTAAATCATTGC	alt_6019_new	144	186	123	120	131	115	154	119	200	104
TAACGAGTCAATTTAA	alt_6019_new	10	5	5	5	1	4	5	3	15	6
TCTTCAGAGCCCATCC	alt_6019_new	34	53	61	42	50	36	53	30	56	31
CAATTTTCTTCGTCGG	alt_6019_new	8	14	6	16	16	11	8	12	17	3
CCCTTTGCCTCCACGG	alt_6019_new	0	7	0	1	4	0	4	2	3	1
CCTCATCAACTGTTTG	alt_6019_new	18	33	38	16	21	21	21	20	29	11
TGGTCAACCGATGTTA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
GCAGAGAATGTCCTTG	alt_6019_new	34	55	41	31	43	33	32	25	50	47
GGCGTTTGATGAGTAG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
GTGTATGTCCAGACGG	alt_6019_new	43	62	56	61	62	54	64	47	70	39
TTATCATTGGGAGACC	alt_6019_new	12	17	14	23	21	15	14	21	22	22
AGTACGTGGAAGCAGG	alt_6019_new	13	13	9	7	6	9	10	15	12	10
TTTCTTTTCAATTGTT	alt_6019_new	12	19	23	14	17	19	17	9	25	11
TTATTAAGAACAGAGT	alt_6019_new	1	1	5	11	10	7	14	3	15	11
CCCGCCAGAGTAATTG	alt_6019_new	13	27	23	13	15	19	20	10	21	14
CGCCCTTTCTTAAAGA	alt_6019_new	47	50	61	47	68	53	52	43	50	54
CCGCAGTACATCTAAG	alt_6019_new	29	76	27	35	68	35	92	24	82	29
GGGGCCAGTTGTATTA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
AGAGGTGATTACTAAA	alt_6019_new	0	0	0	0	0	0	0	0	0	0
CTCTCGATCCCGCGCC	alt_6019_new	0	0	2	0	0	0	3	1	3	2
GGTGTATACGGATCAT	alt_6019_new	33	43	41	47	52	34	38	24	62	28
CTATCTATTAGTCCCG	alt_6019_new	0	0	0	0	0	0	0	0	0	0
TGGACACACAATTTCG	alt_6019_new	71	98	80	73	98	69	101	67	118	72
CATAGTGAATGACCTC	alt_6019_new	27	44	29	34	37	30	44	36	36	31
CGTCTGGCGATATTAT	alt_6019_new	0	0	0	0	0	0	0	0	0	0
GTTTATTCCGTAGTTA	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCTATTCAGGAA	ref_158_fdr	25	12	26	11	7	20	18	15	11	19
CTTATCTGGTAAGTTC	ref_158_fdr	36	12	29	33	14	18	19	25	16	15
TGTTCACTTGTCAGAC	ref_158_fdr	10	12	11	10	11	13	12	12	10	9
ACCCATAGCCAGTGAA	ref_158_fdr	1	1	6	4	2	0	1	1	0	3
GTGTGGCGACCTCCAG	ref_158_fdr	9	9	12	5	4	9	10	7	4	8
GTAGGCCCTGGCCTTT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GGTGCTACCCCTGTTG	ref_158_fdr	21	14	25	19	12	15	17	13	17	17
TCTTTTCGGCTTTTGG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGATGACAGTTGT	ref_158_fdr	43	41	42	44	31	25	40	38	50	34
AAACATTGACTCGTGC	ref_158_fdr	15	17	21	13	18	10	13	13	21	9
GGTTATTGTGCGCTGG	ref_158_fdr	10	6	11	9	4	5	6	7	2	2
TCCGTAGTTCGGGCAG	ref_158_fdr	51	26	40	35	35	27	31	28	24	37
CCGTACATTTTCTTAT	ref_158_fdr	14	6	6	8	25	8	11	8	17	4
GCCGGCATTTTTGATG	ref_158_fdr	4	7	11	5	5	8	4	10	8	7
GACCAAAACCATAACC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GGTACCGATTAATTTG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GATTGTTTTGCCGCAG	ref_158_fdr	137	119	188	192	91	127	123	154	127	113
GAGCAGTGCGAAGGGT	ref_158_fdr	13	10	29	7	26	20	18	15	12	11
ATTACCACCTAGCTGT	ref_158_fdr	46	47	59	58	41	57	54	51	49	52
TTAATGTAATGTACTG	ref_158_fdr	47	55	73	63	35	43	47	51	25	49
TATACAGACTCGTTAA	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GATCCTCGAACTGAGT	ref_158_fdr	18	10	22	26	15	23	19	21	22	19
AATAATTAGTCTTATG	ref_158_fdr	200	163	250	218	171	197	146	183	149	186
ATCTATGAGGTATACG	ref_158_fdr	17	27	31	27	22	8	24	14	31	21
TCGCTTTATTGACTAC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGCTTCAACGCCA	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
TGATTATTGTTTGTTT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCGGCTATGTCTA	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTTCGGCCGTACT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGGTTTGCGAGAG	ref_158_fdr	34	37	45	35	39	32	40	19	35	30
CAGCAGTATTTTACCG	ref_158_fdr	30	16	18	17	17	12	10	18	12	19
TGTGATTGGCCCACAC	ref_158_fdr	51	45	66	53	63	52	42	43	56	38
TGGGACCTCTGGATGT	ref_158_fdr	6	16	18	13	15	10	12	21	11	12
AACCGACAATAGATAG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
ATGATCGGCCTGTACA	ref_158_fdr	42	37	45	48	28	46	32	50	36	32
GAACTATCGCCTTGAT	ref_158_fdr	24	20	23	24	25	22	24	21	16	27
GATATGAAGGATAGTG	ref_158_fdr	33	30	36	37	25	24	27	23	27	41
TTTAATCTATTTAAGC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GATGGCCTCCTAGCTT	ref_158_fdr	5	2	11	7	3	10	2	6	6	5
CTCTTTTGAATCTGTT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCCGCCTACTGTC	ref_158_fdr	6	8	4	16	11	14	17	6	9	6
CTCAGTCCCAATAACC	ref_158_fdr	67	34	81	66	53	65	37	39	59	69
TTTCTCGTTTTGTTTG	ref_158_fdr	37	32	58	66	19	42	22	39	24	49
CTCATCCATGTCTTAC	ref_158_fdr	44	28	61	43	31	40	37	42	33	37
GCGATCATAAACCCTA	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
ATATTCCCTGCCTTGG	ref_158_fdr	28	38	41	35	39	24	23	22	31	21
ACATTTGCTTTTTCAA	ref_158_fdr	17	9	25	29	16	24	13	16	23	15
CTGCGATATTGCGCCG	ref_158_fdr	33	46	51	37	41	42	26	30	31	42
ATTTGTTCATTAAGAC	ref_158_fdr	41	29	46	49	56	33	36	50	32	43
CGCCATGTCGACTAAG	ref_158_fdr	30	15	31	32	10	12	18	13	9	23
TTTAAAGTTTATAAGC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGAGCGGCTACTA	ref_158_fdr	30	18	37	26	23	32	18	25	25	28
AGGAGACTTGCACGCA	ref_158_fdr	65	52	86	79	46	77	54	67	55	59
AGAATGGCTCCCATCG	ref_158_fdr	12	17	17	6	18	5	11	4	13	8
AGATTAGTTTTCGCCT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
AACCGCCGCTTGCTTG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CGCATGTGGCCGCCTG	ref_158_fdr	52	57	59	62	50	56	64	49	55	40
CTGCACCATATGATTT	ref_158_fdr	20	20	56	43	35	39	30	36	33	38
ATCATTTGGCAGGACC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GAATCCTGCTTTGCAC	ref_158_fdr	24	16	30	29	15	27	19	30	24	16
GGTTTCTGCTTGCCAT	ref_158_fdr	69	47	71	63	32	58	31	66	51	45
AGCGCGCCATGATGAT	ref_158_fdr	79	76	137	87	59	87	64	90	62	92
ATATTGAGAGCGCGGC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GATTAGCTGAATAATT	ref_158_fdr	57	42	49	54	32	49	34	39	46	45
ATAAGCCACCTATGCC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTTTCGAGTCCTG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GTCGAGTGGTGTCTGC	ref_158_fdr	15	26	14	18	27	22	33	18	22	8
TTGCTAATTCGTTGAT	ref_158_fdr	32	24	44	37	22	42	18	28	22	23
GTGCTCAATTCATACC	ref_158_fdr	1	2	2	1	1	1	3	0	1	1
CACTTTTGTATCGTGA	ref_158_fdr	13	20	30	27	11	20	19	15	15	9
TCTATCCTGGAGCTCC	ref_158_fdr	27	18	24	34	24	30	12	25	27	20
AACATCTCGCCGTCAT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGCGGACTTGTGA	ref_158_fdr	20	19	23	26	8	27	23	14	19	20
CTAATTAGGCCTCTAG	ref_158_fdr	36	27	46	34	18	27	28	32	28	25
TGTTTATGGATGTGTC	ref_158_fdr	15	14	19	17	10	13	9	10	17	10
ACACGGGCCCGCACCT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTATTTATTGACT	ref_158_fdr	28	23	25	32	27	23	16	22	27	17
TTTCTGTGTTGCAGGA	ref_158_fdr	0	0	2	1	1	0	2	2	0	1
AGCGCAATCAACAATA	ref_158_fdr	105	57	104	108	71	82	90	90	84	111
TTAATTATCTGCGGAG	ref_158_fdr	32	11	24	18	18	21	19	32	17	28
AGCGTGCCTGCATACA	ref_158_fdr	16	19	28	29	21	14	20	15	12	13
TTCCTTGGTGTCATGC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GGGCGTTCTGGTCTAG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTGAATACACGAA	ref_158_fdr	88	48	72	71	64	77	64	56	64	72
GGTTCCCGCCTCAAAG	ref_158_fdr	56	31	67	51	48	39	37	40	43	68
AGCCATAAATTATCCC	ref_158_fdr	39	21	22	30	28	26	22	31	24	32
CAGCAAGTTTTAGTGC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GAAGAGAGGCGTAAGG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
AAGATGTTCGGTAGTT	ref_158_fdr	10	8	14	8	11	10	5	16	11	11
CACAACCCTACTTTCC	ref_158_fdr	6	10	8	11	4	11	2	7	0	5
TTGAATCTTCTTTTCC	ref_158_fdr	81	53	117	96	62	77	55	94	47	71
TCGAAGCGTACGTTCT	ref_158_fdr	87	61	107	79	47	60	58	78	51	65
CTTGCGTTACTCGTCG	ref_158_fdr	39	47	86	59	42	60	38	45	50	55
ACCCGCCTATCCCCCA	ref_158_fdr	57	36	69	63	43	46	40	57	57	69
TGCAATCGCACTCGCT	ref_158_fdr	19	21	38	30	15	26	10	25	24	13
AAAAGTACATTTCAGT	ref_158_fdr	39	41	64	53	43	47	37	62	33	60
ACATGGGCCTGTCTCA	ref_158_fdr	575	396	720	584	405	530	401	522	433	477
ACCTGCTATCGGGCTG	ref_158_fdr	53	43	75	62	41	62	57	67	38	37
ACGTCATTCTTATTTC	ref_158_fdr	15	6	18	9	10	8	14	14	6	17
TAATGTACCTTCTTCC	ref_158_fdr	58	38	52	67	40	48	36	50	27	53
CTATGGCTCAATGTTC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTCACTTATGTC	ref_158_fdr	55	46	78	67	44	45	45	42	60	43
GTACCCTCAATGTTGT	ref_158_fdr	2	2	2	1	2	0	3	2	1	3
AAGCTACATTTCGATT	ref_158_fdr	112	104	161	134	113	123	88	134	105	140
TGCACTTTTGTTCGCG	ref_158_fdr	21	24	26	29	24	26	19	20	28	26
ATGTCGGGTCTTTGGA	ref_158_fdr	25	15	17	15	12	10	9	15	13	14
GGGCTTGGTGACCCTC	ref_158_fdr	52	39	79	47	44	59	35	53	47	39
ACATGGGCCTGTCTCG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTCCCGCATTGCA	ref_158_fdr	7	4	8	13	4	5	3	9	4	3
ATAACCAACTAATCAA	ref_158_fdr	38	27	39	29	24	34	31	23	45	43
AACTTGCTTCAGGTTG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GAAATTTCCTTTATGA	ref_158_fdr	7	8	8	9	8	9	5	10	9	7
AGGAATCGGAGGCAAC	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCGTTGTTTGTGG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
TCGTACAATCTCCGGG	ref_158_fdr	19	26	15	19	19	14	14	9	22	13
TCTAATGATGCTCGGG	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CCTGATGTCTGGGTCC	ref_158_fdr	64	64	85	73	69	78	66	80	62	78
TTACTTGGTAAGATTT	ref_158_fdr	0	0	0	0	0	0	0	0	0	0
CCGGGACGGTATATTG	ref_158_fdr	170	141	184	189	127	168	154	173	139	121
TGTGCGACCCGATCCC	ref_158_fdr	49	33	76	61	24	36	29	44	24	39
TACTGCATATATCGTA	ref_158_fdr	40	13	38	23	24	31	28	21	23	32
GTCTGCGGTCAGTACC	alt_5201_reverse	1	24	7	3	11	3	15	4	22	0
CATCGGTCGCGACAGT	alt_5201_reverse	17	17	21	15	17	13	19	16	21	10
TGTCAGGCTACAATTA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ATAATATTTGGGCTTA	alt_5201_reverse	5	76	9	3	101	10	93	8	97	2
CCACTTCCACAGCTCA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
CGTATAACTTGATATC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTTCTGGTCGAC	alt_5201_reverse	24	14	29	30	27	26	22	26	13	21
TCTACCTGAGATTTGC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GCCATAATGCTTCTAA	alt_5201_reverse	28	23	41	30	31	21	28	27	27	26
TGGTTAACACGATTGG	alt_5201_reverse	10	9	15	19	16	7	18	9	8	3
AGACACGCATTCCTGA	alt_5201_reverse	17	18	17	12	10	7	18	14	23	17
CTCGCGCGTAGTTTTT	alt_5201_reverse	19	17	22	12	16	21	19	13	16	13
CAATGAGTTTCGGACT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTTGTTGGGTGTC	alt_5201_reverse	20	29	25	27	30	30	41	24	28	29
GCAATGCAGTCCGTAC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TAATCCTTGAGTGATA	alt_5201_reverse	19	20	24	14	14	22	22	10	15	15
CTTGCCCCCACGACAG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGTCGTAGCACTG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ACATGTTCGTCGTTCA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
CGCACCTATGCCCCTG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGTCAACATCTAA	alt_5201_reverse	27	34	41	30	26	22	38	27	28	31
CAGTATAATAGATACG	alt_5201_reverse	5	4	2	4	4	2	4	1	7	5
TTGCACAAATTTATAT	alt_5201_reverse	15	15	11	7	16	8	13	8	19	13
TTGCTGGGCTCGTTAT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGTATCCGGTAAG	alt_5201_reverse	9	11	13	11	13	11	13	19	11	9
TAATATTCGTTTCGCT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TACGTGTTGCCTGGCA	alt_5201_reverse	20	25	18	17	24	9	23	15	32	15
GTTTGACCATATCACC	alt_5201_reverse	25	30	27	18	25	23	19	9	32	19
CATTCATCCCTCGCTG	alt_5201_reverse	32	23	29	29	24	18	30	28	33	21
ATCGCTGGTGACTGCT	alt_5201_reverse	12	18	7	12	11	16	13	10	20	6
GTAGAGCTCCCGTATT	alt_5201_reverse	13	15	23	12	12	19	20	16	15	13
AGAGCTAACTTTTCTT	alt_5201_reverse	19	29	31	29	25	45	28	18	31	27
CGTGATTCTGGTTAGA	alt_5201_reverse	2	3	3	1	10	1	5	2	3	4
GGCATTTAATGTTACG	alt_5201_reverse	15	15	28	31	37	24	24	18	33	21
TGCTTTATAATCCCTG	alt_5201_reverse	13	13	16	22	7	13	12	9	14	16
TTACGTTAAGATGATA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGATTTTTGGGTC	alt_5201_reverse	24	41	25	24	30	32	27	24	34	29
TGTCACAATTGTGACT	alt_5201_reverse	6	17	12	11	24	20	13	11	22	22
GTGCTCGCCTCCCATC	alt_5201_reverse	33	48	33	55	36	31	32	43	44	32
AATCTCTTCACTCTAT	alt_5201_reverse	35	26	48	47	37	46	35	32	20	33
TGATGAGTAACGTCTA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TCTACAAACACCTCTT	alt_5201_reverse	10	6	5	9	7	12	7	8	14	6
ATATAATTAGGCCGAT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GTTGACTTGCGTCGCT	alt_5201_reverse	87	110	106	85	105	101	122	93	117	79
CAAAACATGGCAGAAC	alt_5201_reverse	11	10	16	14	7	10	3	14	11	8
TGGTCCCCTATAGTTT	alt_5201_reverse	12	25	17	15	16	19	22	19	29	13
CTTGTAGTCCATTTAG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
CTACCGCTCCATGTCT	alt_5201_reverse	18	31	34	17	28	18	37	17	40	20
TATCTATCATCCGGCA	alt_5201_reverse	20	25	17	14	22	21	17	23	28	9
GCCGCCCGAAATTTTG	alt_5201_reverse	38	24	66	42	30	39	15	55	31	49
CTTCTAGGGATGATGT	alt_5201_reverse	4	6	2	3	11	4	8	1	3	3
ATTCTTTGAGCGTTAG	alt_5201_reverse	7	5	15	15	14	4	5	4	12	11
ATTAGGCTAGGTGCTA	alt_5201_reverse	1	3	4	0	6	1	5	1	3	4
GTCACATGGGTCGGGC	alt_5201_reverse	3	24	3	3	28	3	10	1	25	7
CTATTTTTTCTTCCTC	alt_5201_reverse	9	1	12	2	3	8	6	3	4	4
TGAGTTTCGTGAGCCA	alt_5201_reverse	73	87	65	75	92	59	89	60	77	70
AGGTAGTACTGGGAAT	alt_5201_reverse	35	28	33	18	42	28	26	38	33	27
ATGGCATTCAAATGCA	alt_5201_reverse	33	35	44	29	31	20	38	49	56	35
CGTAACTCAGAGCACG	alt_5201_reverse	21	23	27	15	19	24	34	29	16	29
GGTCCAGGATTGGATA	alt_5201_reverse	45	50	49	43	33	37	33	31	36	32
CTCAGTAGGCGCCGTC	alt_5201_reverse	45	49	37	51	47	30	64	39	55	32
GTCAAGCCCGGGGCCA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGCAAATTGAAAC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TGCATTATTAGTTATT	alt_5201_reverse	19	24	26	20	22	26	37	20	15	25
ACATGGGGCAATTACG	alt_5201_reverse	131	149	195	161	149	138	137	154	160	126
AAGTCGTAGATGCTTC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GTCTATAGGGATTTGG	alt_5201_reverse	26	18	19	24	25	28	27	23	19	13
TTTGTATTAGCCCTAA	alt_5201_reverse	2	5	6	4	8	2	5	6	5	9
CTTCTATGATCCACTT	alt_5201_reverse	13	11	9	9	10	16	16	7	12	7
TCTGACACGGTCTAGT	alt_5201_reverse	98	137	128	104	126	93	133	88	154	87
ACTCTAATCAAGTTCG	alt_5201_reverse	19	22	32	23	25	18	30	28	31	18
GATCGGGGTGTTCATG	alt_5201_reverse	23	28	18	23	28	18	23	17	18	12
TCTTACTAAAGATGCC	alt_5201_reverse	48	49	57	41	55	52	54	61	62	34
CTTCGATCGGGTTTGT	alt_5201_reverse	110	98	104	101	103	82	114	79	120	77
GATTGCTTGTTACCGC	alt_5201_reverse	16	34	26	22	21	18	37	24	35	16
AGTTACGGGTTCTGCA	alt_5201_reverse	37	28	29	33	39	33	39	22	33	16
CTTCCACTGCGCATTG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TTAAACCATTCAGTTA	alt_5201_reverse	29	47	57	26	39	21	43	37	45	23
TTCTTACCCGACAGGT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTACTGCTCGATT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TTTACGCGCAACTTGC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ATCCATCAGGTACCCC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTGAACAGGCAG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GGACTTTCCAGTCAAT	alt_5201_reverse	4	5	3	1	5	2	3	2	3	3
CCAAGGAGTAATACGT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TATAGGTACCTCGGCG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GCGCATGTGCTGACTG	alt_5201_reverse	11	13	21	15	14	10	15	2	23	9
AAGCTCACAATCACTT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTTCAATGGGCTA	alt_5201_reverse	32	45	32	26	46	29	56	24	36	28
CCCTTAATGTCCATGG	alt_5201_reverse	5	8	10	10	7	11	11	7	5	7
TGCTAATTTTCTCCGA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTTTGCAGTACCA	alt_5201_reverse	0	0	1	0	0	3	1	0	0	3
TGTTTGGCTATCGTGT	alt_5201_reverse	17	26	20	11	32	18	29	9	43	17
TAGCACGAAGTAATCG	alt_5201_reverse	18	7	12	16	8	10	12	15	14	10
TTACGTTTGGACATAT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GATTCCGTGCTATCGC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TATTTCGCTGGTAGAA	alt_5201_reverse	13	18	20	18	14	8	20	4	21	10
GTATGACATTGCCGCC	alt_5201_reverse	26	16	33	25	28	13	20	23	20	26
CTAGCTTTGGCGGTGA	alt_5201_reverse	1	5	0	3	5	1	1	0	0	8
GAACAATGTTCACTTT	alt_5201_reverse	18	18	21	26	30	26	24	21	28	22
AGAATCCGTAGACTAT	alt_5201_reverse	12	13	9	5	8	8	16	11	4	8
GCTTTTCGAGTCGAGG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TCACAGGGCCCGTTGC	alt_5201_reverse	29	25	22	20	33	31	36	24	21	32
CTCGCCACTGCCCAAC	alt_5201_reverse	1	4	2	3	8	1	1	4	3	0
CTCCCTGCTTAAGTGT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCCCCCTATATTC	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
CGAAAGATTTGTGATA	alt_5201_reverse	58	65	82	51	57	72	68	63	79	56
GGAGGTTGTATTATCT	alt_5201_reverse	51	50	66	40	50	51	63	49	57	46
CTTTGTCTAAGGCCAA	alt_5201_reverse	2	2	1	0	3	1	2	0	3	5
GAGCCCCTTTTACCAT	alt_5201_reverse	19	24	25	20	21	18	35	14	18	11
GTCTAACGCTGTACCC	alt_5201_reverse	11	38	11	7	38	8	34	9	41	6
CGAAGTTTTTGTTCTG	alt_5201_reverse	92	90	69	81	83	68	111	60	91	58
CACGTGATGCCACTTA	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGCGCTACGGTG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCTTTGTTTTTAG	alt_5201_reverse	46	54	40	40	51	53	64	44	56	41
ACGTATCAACGTAATG	alt_5201_reverse	66	55	64	51	75	47	76	54	80	47
TAGCTCGGGAAAAGTT	alt_5201_reverse	51	34	66	40	44	30	44	55	52	34
ATCGCACGAAAGCTGC	alt_5201_reverse	0	2	2	1	4	1	6	1	1	2
TCCGTTCTAGAACAGT	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGGAACTGGTTGT	alt_5201_reverse	20	24	35	29	32	34	30	27	26	38
TTCATTTCAGGCCTAG	alt_5201_reverse	0	0	0	0	0	0	0	0	0	0
ACATGTTGGAAGAGAT	ref_3878_fdr	71	57	75	87	37	82	41	56	37	73
AAAGGTCCATACTAGG	ref_3878_fdr	23	20	24	17	12	17	11	11	12	14
CCGGTTTCGCTTTGCG	ref_3878_fdr	24	15	23	31	18	24	14	20	12	14
TTAGTTTCTGGTCGTC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTTCTGTAATCTC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GATTAGATTATTGCGG	ref_3878_fdr	27	25	41	37	25	27	33	36	21	26
TTGCGGCATATGCCGA	ref_3878_fdr	26	11	31	34	9	19	8	17	14	28
GTTTTACCAGTCATAC	ref_3878_fdr	20	13	28	16	17	24	14	29	23	19
CAATAGAGCTGATTGC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
TAGGCGCAATTAAGTG	ref_3878_fdr	123	75	131	120	89	88	75	105	80	66
TGTTTGGGGTTACACA	ref_3878_fdr	21	24	39	24	15	27	17	26	21	21
TAATGGGAGACACAGA	ref_3878_fdr	41	19	60	46	37	46	45	32	32	34
ATGTAGCTGGTTGATG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
TGAGATGCTCTCGCAG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
ATATTCCCGGTATTGC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GGTATTCCACGGATCT	ref_3878_fdr	5	7	22	9	10	10	14	6	8	10
CATAGGCGTGAAGGCT	ref_3878_fdr	32	17	31	31	29	43	35	34	25	21
GTTATCTGTGGGGTTG	ref_3878_fdr	18	9	28	24	15	20	16	12	17	9
CCTATCGGCGCACCAA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTTCCGGTACTTG	ref_3878_fdr	43	27	70	40	40	47	31	43	54	27
GTTTATTCGCCTTCGT	ref_3878_fdr	11	7	7	14	6	6	7	5	5	10
GAACCCCAACTATCTA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGTCGCAAACAGC	ref_3878_fdr	23	27	33	27	39	34	32	22	42	24
CAGCTTCCAGTTTCGT	ref_3878_fdr	25	43	61	70	42	29	59	43	40	39
CGAACCTCTTATTTTC	ref_3878_fdr	38	16	37	32	46	32	19	40	27	33
CTACCGTAGTTCAGTT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GACTTCGCACGAAAGT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GGTACTTATTAAGGCT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GGCGGCGTTGCTTGAG	ref_3878_fdr	11	15	24	14	11	13	12	14	9	18
TATGGTCTTTACCACG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCACTTGTATCGTATC	ref_3878_fdr	26	20	43	23	30	27	12	34	22	29
TAAACTTCTCTTATTG	alt_3878_fdr	193	183	243	189	175	197	201	162	186	162
CTTGTACCGATACTCC	ref_3878_fdr	6	4	10	1	7	3	11	2	7	0
CCTGAATCCCGTGGGA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCCATCTAGTCGATCC	ref_3878_fdr	97	76	106	127	101	85	101	93	92	78
GGGGGTCTTCGCGGCT	alt_3878_fdr	64	63	66	69	66	33	57	47	60	49
CCATACAATCTCTCCT	ref_3878_fdr	49	28	51	59	42	40	33	53	40	46
CAATAGCCCCTGATGC	ref_3878_fdr	11	9	17	11	6	6	11	15	11	11
ACTTCCTTCAGTCCGG	ref_3878_fdr	19	12	24	12	13	20	18	14	20	16
CATTTCGAGTTTGAGG	ref_3878_fdr	42	20	59	44	16	41	32	27	33	36
GGATGATAACCGTTAG	ref_3878_fdr	64	36	79	49	38	71	37	56	44	48
GTTAAATTGGCTCGAA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CAAAATTACATATTAG	ref_3878_fdr	6	9	11	12	5	5	8	11	1	6
CTAGTTTCTGGAGGAC	ref_3878_fdr	202	142	276	222	122	233	149	219	159	188
TCTGTTGCAAACAATA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTGTTAAAACAT	ref_3878_fdr	32	26	36	31	28	33	25	40	35	35
GTCAATTATTTCGGCG	ref_3878_fdr	79	48	81	67	56	54	57	62	36	55
TTCTCCAAATATTTGA	ref_3878_fdr	56	40	64	50	39	53	41	44	35	36
CTTGAAACCTTGTCTC	ref_3878_fdr	84	53	110	80	44	84	67	75	71	81
TACCGAACAGTTGAGT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTATGGTTCAACA	ref_3878_fdr	2	2	3	2	2	1	1	4	3	1
TCACCAGTGCCCTGTT	ref_3878_fdr	41	33	69	71	34	48	33	63	37	32
AAAACCATGCCGTGTT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GACTGTATATGAACTT	ref_3878_fdr	9	8	10	10	5	14	4	11	4	10
GGCTTTATTATTATAG	ref_3878_fdr	5	3	5	3	1	0	1	4	1	4
CGTGCTAACGCCATTT	ref_3878_fdr	114	49	149	110	52	116	43	97	57	80
AGTTCACGGTGCACAT	ref_3878_fdr	151	89	175	145	104	123	90	129	81	132
ATCCCTGGTGTATTGG	ref_3878_fdr	27	17	31	16	22	15	18	20	23	20
AGAATCCGGCTCCGAT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTTAGGGGAAGGT	ref_3878_fdr	12	25	23	18	14	11	24	32	35	15
CGCCTTTAATGGATAT	ref_3878_fdr	37	23	68	37	31	38	32	35	31	43
CTTTTTTTTTCGATGG	ref_3878_fdr	30	26	47	16	20	33	14	23	19	26
TGGATGTCCTTAATAG	ref_3878_fdr	70	39	67	66	44	61	33	70	53	69
CCATTATTCGCCGGAT	ref_3878_fdr	147	96	188	150	118	166	108	155	107	132
CAAGTAGGTGAGTACA	ref_3878_fdr	60	63	91	77	55	82	55	58	53	66
TTCACCCGCTTACCGC	ref_3878_fdr	13	25	18	22	38	16	27	16	12	19
CTTTTCAGCTTCTGTG	ref_3878_fdr	22	29	19	38	21	33	29	34	21	26
TACTGTAATGGCATTA	alt_3878_fdr	31	31	54	40	36	46	24	46	36	42
ACCTTTAAGTTTGCGA	ref_3878_fdr	9	9	7	5	2	6	7	9	3	5
CTACCCCCTATATTCT	ref_3878_fdr	110	79	147	139	90	105	96	116	110	117
AGGCATTCCACTGTGT	ref_3878_fdr	71	46	62	61	40	46	39	68	55	66
CGGCGCTGGACGCCCA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CAAATGGGCTTGTGTC	ref_3878_fdr	8	3	16	6	1	9	8	7	6	7
TCACGCAGGTCAGGTT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CATGCTACGGGGTAAG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTTGAGACTGCC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GTAGAGGTCCTTTCTG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGCGTATGCAACC	ref_3878_fdr	12	18	26	17	12	29	16	23	16	18
ACGTTCTTTGTAAGTA	ref_3878_fdr	59	55	100	90	54	70	49	74	34	56
CGATTTGTTTCCCTAA	ref_3878_fdr	86	39	77	81	38	58	45	69	62	68
CGCATCACACGGACTG	ref_3878_fdr	39	43	53	46	31	59	36	46	32	41
TTCATCAGATAATTGT	ref_3878_fdr	16	9	13	17	17	14	22	17	17	9
TTTAATTGGACCGCCA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCGCAGCCTATTACTC	ref_3878_fdr	3	7	12	4	10	4	6	6	10	3
TTACCGCCTCCGTTAG	ref_3878_fdr	49	28	52	50	28	42	36	40	28	40
CACTTTGTCCGGGGAC	ref_3878_fdr	48	18	45	43	33	49	38	44	25	46
TGTGTTGGTGTCCTCT	ref_3878_fdr	34	23	40	24	25	40	26	38	34	33
CACTGGCGTTCGCCCA	ref_3878_fdr	30	17	44	31	21	34	25	39	30	30
TTCACGGACAACATGT	ref_3878_fdr	36	28	40	28	32	30	29	29	30	33
TCGTCGATAAACGTAG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CTTCAGGTGATGAGGC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTACTAGCCTGC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTGACCCCATGTG	ref_3878_fdr	6	1	3	4	5	1	8	3	5	3
CTCAGTTCAGTCTCTA	ref_3878_fdr	29	13	17	31	17	22	17	30	14	23
CACCTCTAGATCGGAG	ref_3878_fdr	185	125	236	210	141	178	144	157	145	153
CCACCTGCCACTGGGG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACCAAGTTCGTTCGTG	ref_3878_fdr	22	14	18	22	22	19	17	18	20	18
CGTACTAGCATTGCAC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCATCGATATGGC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACCAAAAACCATTCTT	alt_3878_fdr	1	4	4	5	2	3	2	1	6	1
GAAACATTTCGTTATA	ref_3878_fdr	17	5	20	14	9	15	12	12	7	10
GACAACTGTCGCAAGG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GGTTACAGGGTCGGAT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGTGACTGGTAAT	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTTTGTCGGTTCG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
TACTTCCATTAAGCAG	ref_3878_fdr	47	39	66	48	36	54	35	67	47	61
AGAATGTGTTCTCGTA	ref_3878_fdr	74	49	69	89	66	64	34	59	64	54
TCTTGATAAGATATGA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
TAATCGATATATCGGC	ref_3878_fdr	55	37	61	54	32	43	26	37	44	36
GACTCCAGTTCAATTC	ref_3878_fdr	5	8	17	6	7	7	4	8	11	10
GGGTCATTCTCTGTGT	ref_3878_fdr	13	12	16	15	12	11	18	9	16	9
TAACGTAGCAATATCT	ref_3878_fdr	31	25	54	43	38	45	28	27	31	43
AGTAGATCAGCTATCA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
AACTTACTCGACGCTC	alt_3878_fdr	7	35	11	9	35	4	22	6	40	8
CTGTGGGCCCCCGGTG	ref_3878_fdr	7	4	12	4	7	7	6	6	12	7
CTTATCAGGCTTTGGC	ref_3878_fdr	49	28	57	38	22	40	34	40	39	46
CCCTGTTGTTTTGCTC	ref_3878_fdr	2	9	3	6	8	2	15	1	10	4
GCTTTCGACTGAAGCC	ref_3878_fdr	6	10	6	7	7	4	13	4	18	1
CTTTTCCTTAAGGCTA	ref_3878_fdr	17	8	28	17	13	14	11	22	17	9
TGCAATTGGCCAGCAC	alt_3878_fdr	30	38	51	32	39	25	42	28	42	30
GTAAAATCAAATGGAA	ref_3878_fdr	11	6	7	4	5	5	2	9	6	3
AGTTGTAGCAGCAGTC	ref_3878_fdr	70	51	83	65	67	61	77	77	61	51
TGAGCACACCGGACTG	ref_3878_fdr	45	35	49	66	49	55	40	60	25	52
AAGTTTTTGTCTTGCG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCATGTAGCGAAA	ref_3878_fdr	15	11	22	9	12	11	11	9	12	7
TTTTAACAAGGGTTCC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTTGGTGTCATT	ref_3878_fdr	30	31	58	38	26	40	26	34	24	33
TTGTGAGGCTTGCTCA	ref_3878_fdr	47	51	57	57	46	62	36	52	41	39
TGCCTTTTTAACCTCG	ref_3878_fdr	0	0	1	1	0	2	3	3	1	0
TGTCAGTGTGTTCTAA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
AATTGTTACATGCGTG	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCTAGTTCTAACG	ref_3878_fdr	96	73	133	113	65	81	67	88	72	69
GTACACGCTAGTAACA	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTGCTTCTACAC	ref_3878_fdr	59	42	54	65	36	51	46	50	42	34
ATTTCAATCACATGTT	ref_3878_fdr	21	14	18	18	6	15	18	17	17	18
ATAACGCCAAAGTAAG	ref_3878_fdr	96	46	103	94	45	67	45	75	57	72
TAGTACCGGAGCAGAT	ref_3878_fdr	53	39	73	53	42	64	35	60	48	58
GTTCTGAGGCGTCCCC	ref_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCTGATCCGCAATCAA	ref_4247_missing	13	16	22	7	15	12	15	5	17	5
GAGGTCTTGATATGTC	ref_4247_missing	5	11	10	10	10	5	23	1	10	4
TCTGAAGCTCGAACCC	ref_4247_missing	5	5	6	7	5	3	5	2	10	0
TACCTGTCTCTTTGGC	ref_4247_missing	4	11	11	6	12	8	27	10	28	6
TTGCCGTTCTCCGTCT	ref_4247_missing	9	25	13	11	17	14	30	16	22	11
TCTGGTTCTTCTGCTA	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CTGCATTCAACTATCG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CCTACTCCACGCTAGA	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CGGCCTGCCCTCTATG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
GCGCGTTGGATCGGTA	ref_4247_missing	12	20	9	17	19	9	23	18	24	6
CTGGCTAGCCACACAA	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
TTACAGGGATCGGATT	ref_4247_missing	19	21	16	17	15	14	20	13	25	5
ACACTGTATTGTTTTG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CCTTGTGCGTTACGGA	ref_4247_missing	4	1	3	3	3	1	3	1	4	1
TCTTTGACGTTTTGTG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CGGATGGTATGCTTGT	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
TGATTGCTTCTCACCG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
TTCCTTATATACCATG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
ACCATAACTTACATTA	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
ATAAACGGCCTACTGC	ref_4247_missing	0	1	4	1	1	2	4	1	4	1
ACTGCACATGTCTTGG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CTTTCTAACGGTTGAC	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
AACTATGCTAAGCGCC	ref_4247_missing	4	15	10	7	6	10	14	17	12	5
CTTCTTCTGCCCATGC	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CTGTTTAGCGTGGAAT	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
TTCAATTATTCTGCCC	ref_4247_missing	23	38	24	24	21	18	33	18	25	20
GTTCTCTTTTAGAGGG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
AAACCACTTCATCTAG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
TGCTGATATACGACAT	ref_4247_missing	11	20	12	16	28	22	20	17	26	15
ACATAATAGTTCGCCA	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
TAACTACGCGTTGCTA	ref_4247_missing	4	10	4	5	11	8	6	4	5	2
TGGTTTCTCTGTCAAG	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
AGCGCGTTTAGCGTAT	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
GTCTTCATCGGGTATC	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
TGTGCAGTTGTACATT	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CTACTTTTTAAATTTA	ref_4247_missing	1	1	0	0	0	1	0	0	1	0
AGAAGCGGACGACCAC	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
CTTTCAACTCCTGGTC	ref_4247_missing	2	7	7	4	2	2	5	1	9	4
TCCCCCAAACAGCGTA	ref_4247_missing	11	12	7	8	17	5	14	11	10	6
TATTTGTTTCACCAAA	ref_4247_missing	0	0	0	0	0	0	0	0	0	0
GTGACTACTGTGCGGG	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
AGCACTCCTCTTTTGT	alt_1252_RC	21	38	17	22	36	15	48	19	52	18
GTTGAGTTGAAGCAGA	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TTGCATCTTTAGAGGC	alt_1252_RC	22	17	20	18	13	11	21	14	19	21
TTATACGCCACATTAC	alt_1252_RC	2	6	9	0	5	6	4	1	7	4
ATCGTCTCTGCTAGTT	alt_1252_RC	11	18	11	12	12	8	17	11	10	10
ATAGTTAGAATAACCC	alt_1252_RC	22	32	33	29	38	24	34	30	51	29
ATTGATAATTATACAA	alt_1252_RC	1	4	3	5	5	2	9	4	6	8
CCCTGTGGGAACCCGC	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TCCCCAACAACGATAT	alt_1252_RC	3	6	2	2	8	2	11	3	16	6
CTGTCATATATTATTA	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
CGCGCGTTGATTAGCC	alt_1252_RC	8	11	11	10	9	10	17	4	9	1
TCATACCAGGTCAAGC	alt_1252_RC	260	384	287	264	383	246	358	249	384	257
GCGCCCGATGCTACGC	alt_1252_RC	13	20	17	11	19	19	23	11	12	14
GAATGCCACCCTGTCC	alt_1252_RC	55	70	61	54	88	54	81	48	89	52
TGCAGGAAGCTGATTC	alt_1252_RC	12	8	14	10	10	11	16	14	8	8
AATCAGCTACCCCCAC	alt_1252_RC	3	0	5	7	2	2	0	2	6	2
ATTTAGATGTTAAGCT	alt_1252_RC	9	21	22	16	21	15	33	12	25	16
GTCTACAGAATTGTGG	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
CGCCCACTGACCTGGA	alt_1252_RC	24	42	45	33	53	27	42	27	54	40
AATTGACATCTTTAGA	alt_1252_RC	128	186	151	155	205	159	215	124	200	112
GACGATACACCTCCTT	alt_1252_RC	6	9	8	1	13	10	4	5	13	7
ATTTGTTCGGCTCGAT	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TATAGTGAGTCAATCA	alt_1252_RC	90	115	102	111	125	95	128	115	148	86
AACGGTCGGCGTGATG	alt_1252_RC	21	24	23	12	31	17	20	16	24	18
TCATGCCTATTGGCCT	alt_1252_RC	10	17	15	13	17	7	19	7	20	9
GTGAGGATCGGAGGAC	alt_1252_RC	10	5	7	5	9	4	14	11	8	0
AGGGTCATTCTCTGCC	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
GCTTCCAAGTAGGGAG	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
GTCGGCTCAAGAGTCT	alt_1252_RC	26	38	46	30	37	28	42	23	56	16
TATGTCCCAGTATGGA	alt_1252_RC	3	0	0	0	0	0	0	1	1	0
CCCGTAAATCGACGGC	alt_1252_RC	3	6	0	2	6	4	7	0	5	3
ATTTTTTTGTTTGGTG	alt_1252_RC	14	13	9	12	18	7	16	17	18	12
TGGAAGATTTGGTCTT	alt_1252_RC	13	16	10	9	14	8	14	9	15	7
AATAACTTGAATCCCA	alt_1252_RC	186	259	255	254	276	205	261	206	279	202
CTAGACGTGACCCGTT	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TGCGATGGCCTCCGAA	alt_1252_RC	44	63	54	42	56	40	40	44	57	51
CCGGTTCTACAGGGAG	alt_1252_RC	11	16	13	16	15	13	15	23	13	16
ATGTTCAGTTTATAGG	alt_1252_RC	28	38	43	30	35	29	47	27	43	18
TTTCGCTGCATGCTAG	alt_1252_RC	15	23	15	19	31	15	25	15	18	13
CGTTGGGTCAGTCAGT	alt_1252_RC	48	61	44	33	52	43	49	29	54	36
TCATTGGTGTTTGGTT	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTAGTGTACCAT	alt_1252_RC	5	8	5	9	16	10	10	7	9	3
GACAAGATCAGTATCA	alt_1252_RC	30	52	43	22	45	33	43	35	53	29
CTGGTATGGTTAGTAT	alt_1252_RC	10	9	7	7	12	14	6	3	9	4
TGTCGCGTTATTTAAA	alt_1252_RC	4	8	5	6	13	7	10	8	9	3
TGAATGACGTATCTGA	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TTCCCGCGAGTATGCC	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TCAGCTAGGTACGCAG	alt_1252_RC	17	31	17	14	26	20	24	20	34	13
TCTATCGCATGATTAT	alt_1252_RC	23	46	18	30	41	27	42	21	49	28
TATCATTCTATTTGGC	alt_1252_RC	13	12	10	8	18	9	9	14	15	6
GACGGGTTTTGGTACC	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TTGCCGGTTTGAAATG	alt_1252_RC	65	73	68	48	89	44	73	51	79	44
AGCAGCATGTCCTCGC	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
GTAGCAATGCTTCGTC	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
TGAGGCATGTAAACCT	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
ATTCATTCGCTCGGGA	alt_1252_RC	46	64	51	47	70	37	74	38	54	37
TCTGGCGTCTAGAAAC	alt_1252_RC	0	0	0	0	0	0	0	0	0	0
GAAGTTTGGTCAGTCG	alt_1252_RC	6	10	9	10	10	7	11	8	13	8
TTGTCTTAAGGGAGTG	alt_1252_RC	15	27	10	15	23	7	20	10	24	10
ATGTGCGCTATGTGCT	alt_1252_RC	16	24	22	18	37	22	31	16	21	22
TCAATTTAACGATCCT	alt_1252_RC	15	17	15	18	17	19	13	18	9	13
CTGCGTCTTAACCGGT	ref_1252_RC	8	7	11	2	11	10	19	5	10	3
AGCTGTTAAGGTTTGT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
AGTATACTCGTGACAT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CATCTCCCCCCGAACC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCGGTCAACGGTC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTATGAATGTCTGTGG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ACCTCAACGATCTATT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TAAAATAATCCTGCAA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGCCAGTCTTACTGAA	alt_2618_reverse	2	4	0	2	5	1	7	4	3	4
TCGCCAATCCCTCGTA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTGGATTTTCATTAGC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGTAGTCCCACTC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TAATATGCTTCTTCAA	alt_2618_reverse	14	28	27	22	31	16	19	14	20	16
GTGGTAATGCTATTTA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGTCGCAACTTG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATAAACCTATAGCTTG	alt_2618_reverse	12	12	12	17	26	8	16	6	15	8
ATAACGTATCCCTGCT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GATGTACAGCATCCGC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGCAACGGATTGACTT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGTCACCGCATATAAG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ACGCAACTGGCATTAC	alt_2618_reverse	14	22	12	20	30	15	22	10	19	7
GGGCATTACAATTACT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATAATGCTCTTACTGA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GCACTTATATTTTACT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCCATTCTCTCAGATG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTGCAGAACTGCG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGAGATCGACTGC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTAACTGCCACGG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCCCAATCTAGGC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GACATTAAAAATTCGC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGCATAATTAATA	alt_2618_reverse	15	9	14	12	21	8	23	6	11	13
TACTGGTGTAAATTTG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGTGTTAATTATC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGAAGACGGTTTCGTA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTTTACTCTTTTT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CATACTTTAGGTGTCG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
AATAGCGGGCAACACT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCCAATCACGACCGGC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGCGGCCCGGGCG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCTTATGGCTTACAAG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTGTTAATCTATG	alt_2618_reverse	12	14	15	9	20	12	20	15	9	9
GTAGATTGTACAAGGT	alt_2618_reverse	7	7	13	2	18	2	12	5	12	6
GAGAGAAACTAGCATA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTGTAGTTGAGAAAGA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTTATTACACAAACGC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
AAGTGCCCAAGTCAAG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TATATTCTCAAATCTG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATGATGTCGTTATTGG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGCACCAGTGGTG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCCGATTTATGAATCT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCCCCTTCCGGCG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ACCCATCTCCGGCAAA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TCAATCTGGCGTATTG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTTCGTCCGCCTC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGATCGGTTAACTGGA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTCTAAGCCAGTC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCGTCTTTGGGTT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTCATGACGATGCTAT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATTAAGGTGCTTAGTA	alt_2618_reverse	2	2	0	0	6	1	7	0	5	4
TTGTGTTCGGTAATAT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGAGTGGTATAG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAGAGCGTGGATG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GCACACTGTACCCCTC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
AATCGATCTGAGTGGA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCATCTTGTTTAA	alt_2618_reverse	8	11	6	10	9	0	4	2	8	3
TAGCCTGTTTATGGCG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGCGAAACGGTGATCA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGTTCGTTCAGTC	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTGGACGGGATCG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCTAACCAGCACG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCACAGCGTCTG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TACGGATGATCATTTG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCACTTCCTTAGT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GTCGATCGTGGGTTTG	alt_2618_reverse	2	18	1	4	16	1	12	4	16	1
CGTTATTTTTCGGCTT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGGACGTAGCCTTAAA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGCCATGCCACGA	alt_2618_reverse	5	19	13	14	19	9	8	10	24	12
GCCAGTGATCCCCCGG	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GATGGACGCAGTTGTT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
ATCGAGTGTAAGCAGT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TTAAAGGTTAGCGATT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTATACTAAGCGA	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTTGTAAGAATCT	alt_2618_reverse	0	0	0	0	0	0	0	0	0	0
TGAATATTAATGGAGC	ref_2853_fdr	59	81	80	54	67	65	72	54	69	43
TTCATTATACATCTCT	ref_2853_fdr	50	40	69	43	49	39	39	42	42	45
CGGACTTAGCAAATCC	ref_2853_fdr	1	1	4	1	4	0	2	2	2	1
CCAAGTCTCTCGCTCT	ref_2853_fdr	17	24	22	18	34	23	24	10	13	31
CCTCGGGAAGCGGTAT	ref_2853_fdr	35	40	27	28	32	42	43	38	35	22
AGGTCCGAGGTCTATT	ref_2853_fdr	19	22	23	21	27	19	24	21	19	17
AAATTTTTCCATATTA	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GGACTGCTTGTTTCGG	ref_2853_fdr	14	28	14	19	14	13	18	10	23	21
TTACCTAGTTTGTAGG	ref_2853_fdr	15	36	17	24	26	19	16	20	34	21
GCCCTGTAGTTCGATG	ref_2853_fdr	36	30	32	34	30	32	45	40	42	42
GGCCCGTTCTACTATC	ref_2853_fdr	73	55	87	64	69	60	64	61	100	71
ATGAAAAGCCTATGGC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGCGATGCACGCATTT	ref_2853_fdr	95	126	120	108	117	94	174	111	138	98
ATCAGTGCCTTTCACC	ref_2853_fdr	72	58	91	70	62	63	67	59	83	62
ACCTATTTTCGGTTCG	ref_2853_fdr	3	1	0	0	2	0	2	1	1	0
TGATCTTGGTCTTTGG	ref_2853_fdr	46	42	58	37	38	43	46	26	39	25
CTTATGCTCGTCGTTT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GTACGATCTGAGTACA	ref_2853_fdr	42	79	39	51	54	24	56	42	69	38
AATCAAATGCCGTTCA	ref_2853_fdr	95	107	126	89	113	83	102	96	107	91
TGTTGAAATAAGGGGA	ref_2853_fdr	3	4	2	4	3	2	5	3	3	5
TACTAGGGCAGTGCTT	ref_2853_fdr	14	19	8	15	18	10	14	13	12	10
CGGTCTCCCGGCTTAT	ref_2853_fdr	30	18	25	20	10	23	26	22	35	15
GTATCTATTACAAACG	ref_2853_fdr	24	31	17	27	24	26	25	15	29	22
ATTGCTACAGGTCAAC	ref_2853_fdr	35	36	44	34	42	39	33	29	35	30
GCGACTTTGCGCCCGG	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
AGTGATGCTTGGTAGG	ref_2853_fdr	9	9	15	12	7	5	11	8	9	6
TTTACGCATTGATCGC	ref_2853_fdr	9	11	9	7	11	11	7	10	10	6
CCGGGTTTTAGTACAA	ref_2853_fdr	28	45	44	27	50	19	46	34	51	21
CGCATCGGGGGTGTCG	ref_2853_fdr	108	76	97	99	66	115	98	77	105	84
GGTGACATAGCTGATA	ref_2853_fdr	9	8	8	6	6	6	7	6	5	2
CTATCTGGCACGCCTA	ref_2853_fdr	27	43	45	38	38	42	34	38	32	27
ATGGTATTTGAGCCTG	ref_2853_fdr	80	94	92	91	107	79	102	71	101	76
ACTGACATATTCCTGT	ref_2853_fdr	97	71	130	97	72	84	90	98	96	80
GAGGTATGACAATGAT	ref_2853_fdr	96	115	99	98	93	91	106	73	104	92
CTGCAAGCATGATGCC	ref_2853_fdr	25	44	34	34	32	36	44	31	47	20
GCGATAAGGATGTCCC	ref_2853_fdr	32	31	52	49	40	34	43	24	46	22
TGTCCGGCATAAGTCA	ref_2853_fdr	56	48	43	37	42	33	41	36	49	47
AACTGTAATTGTACAC	ref_2853_fdr	18	32	17	23	33	16	24	19	28	9
CGCTTTATTGGATGCG	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CCGCACAAGATCTGCC	ref_2853_fdr	163	117	163	134	131	133	126	115	140	130
GTCAAGGCGCCGCTCG	ref_2853_fdr	6	7	11	11	25	7	21	4	15	15
CCAGCACGTATCCTGC	ref_2853_fdr	10	47	3	10	50	3	43	15	53	3
AGGCCCTCTATATTGC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTCTACTATAGCACTT	ref_2853_fdr	35	33	42	46	49	40	55	35	59	37
GATCCTTGTTAATGCC	ref_2853_fdr	28	31	38	40	34	33	42	40	29	23
GCATGTTATTAAGCTC	ref_2853_fdr	12	10	17	12	12	9	19	15	13	12
AACGCGCCCTGCGGTC	ref_2853_fdr	94	90	82	74	100	70	83	64	84	61
CTGTGTCATTCTAGAA	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
ACTTATTTTTCTGCAC	ref_2853_fdr	29	31	32	29	47	15	27	24	22	27
CTGAGCCTGCCTGTTT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
AAATGCTTACGATATC	ref_2853_fdr	29	29	35	29	30	25	41	31	25	28
AAACAGGCCTCCCTAT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CTCTAGGCTCAGTTAC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
AACGATCAATTCAAGG	ref_2853_fdr	32	30	26	15	25	26	15	27	24	19
TTTACATTCGCGTGTA	ref_2853_fdr	8	6	10	8	8	10	5	4	9	10
TAATGTTTAGCACTGA	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GAATATTCGCCTAGGC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CGGGGTTTCATTTGTG	ref_2853_fdr	88	83	93	58	88	83	76	89	84	74
ACTCAGCCCATGTCGG	ref_2853_fdr	6	8	3	3	10	8	11	5	12	10
CTTTCGCTGTCTAATG	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAGTGATCTGGCC	ref_2853_fdr	34	39	47	22	28	25	23	38	46	15
TTCCTAAACCGTAGAA	ref_2853_fdr	20	23	17	16	13	16	23	9	15	12
TGCTTATCAGGTTTAG	ref_2853_fdr	4	2	6	3	5	4	1	5	3	7
ATAGTTTTCTCATTCC	ref_2853_fdr	19	17	23	18	23	19	24	14	25	17
TACTTTCTCGTGGGTT	ref_2853_fdr	14	16	6	11	10	7	10	5	12	14
TTTATAGGTTAACTAT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCGTTCGAGCGGG	ref_2853_fdr	9	8	12	7	6	14	12	12	9	16
CCGCTGCAGCCTGATT	ref_2853_fdr	29	28	45	42	30	26	49	33	36	28
TGATTTATGCCGCGGG	ref_2853_fdr	5	4	11	4	7	8	6	4	6	6
GTCGCACTGGGCTGAC	ref_2853_fdr	11	19	25	19	20	17	20	13	15	24
CATTCAGGCGGTTCAG	ref_2853_fdr	94	99	142	98	97	63	94	83	92	82
CTGGGTGCTTTGGTAC	ref_2853_fdr	11	23	12	12	25	12	17	10	30	4
TCAGGTCTACTTTATT	ref_2853_fdr	14	24	15	13	28	11	21	26	26	13
CTCCGGTGCGTCACTT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
ATAATGTCAACAGGTC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GGAATTGTACGTTGCC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGAAAAATCACAA	ref_2853_fdr	50	63	79	56	50	52	65	41	64	40
TTCCTTTCCGCGACCT	ref_2853_fdr	24	17	27	19	34	20	26	17	22	18
TAAGATGCGGACGCCC	ref_2853_fdr	20	19	25	10	21	12	27	19	24	24
GTCCATTCGTGGCAGA	ref_2853_fdr	17	11	17	11	14	11	22	14	19	8
CGCTTAGTATTTAGTG	ref_2853_fdr	21	16	11	11	7	14	20	7	16	13
TAATCACTAAGATCTG	ref_2853_fdr	3	13	10	9	8	5	10	6	10	5
CTCGACCAACCGTTTT	ref_2853_fdr	36	39	32	28	35	22	34	29	38	22
ATAACAAGCAACACTC	ref_2853_fdr	2	8	1	6	2	4	8	2	5	3
ATTCGCTCCCGAGACA	ref_2853_fdr	15	17	6	19	17	18	12	16	19	12
CCCATCCTGGGCCTGC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGATTACATCAAG	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
AGCAGACTATGGTCTT	ref_2853_fdr	120	140	177	134	136	94	112	102	113	118
TCCTTTGGACATATTA	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
AAAACCAGGATGTGCG	ref_2853_fdr	29	36	38	44	42	26	34	33	30	25
ACGCTGTCAACGAAAG	ref_2853_fdr	24	34	27	26	33	17	39	23	40	18
TGATGGAGTTTCGTAG	ref_2853_fdr	6	4	3	3	1	3	3	1	3	2
TTGGATCCGCCTACGA	ref_2853_fdr	22	32	20	17	32	25	20	19	33	16
CCGGTCGTGTGTGGGT	ref_2853_fdr	2	16	3	8	23	6	16	6	16	5
GTATACCGCTTCTGGC	ref_2853_fdr	10	9	15	12	3	5	11	11	12	12
TCCGACATCCTCGCGT	ref_2853_fdr	16	13	14	10	25	13	11	5	16	10
ATTTAGTCGGCCCTCG	ref_2853_fdr	22	28	44	40	24	31	25	25	40	32
GTTATGATGCATTATA	ref_2853_fdr	3	9	7	5	9	5	15	5	13	7
GGCCACCGGCGGATCT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGTATGCACACTG	ref_2853_fdr	7	18	6	7	17	8	13	6	10	10
ACATGTCTATGATTTC	ref_2853_fdr	23	23	29	21	21	14	16	17	26	15
GGAGTTGGGGGTCGAG	ref_2853_fdr	2	7	7	4	4	5	4	3	3	1
TCATTGACGATTTGGA	ref_2853_fdr	93	86	97	91	70	94	108	85	92	82
TTCTAAGCTAAATCAT	ref_2853_fdr	54	51	63	55	44	35	42	44	65	59
TCATAATGGTGATACA	ref_2853_fdr	40	53	53	46	54	32	54	34	57	39
TGTGCGCTGCCCGCCG	ref_2853_fdr	116	94	119	103	104	92	78	79	103	97
ATAAACTCAGTGGCTT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GCGGACTGAAGAATGG	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCGATTTTGGCAC	ref_2853_fdr	1	5	1	1	0	0	1	2	1	1
TGGGTGTACCCTAGAG	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTTTGGTAATGCC	ref_2853_fdr	69	96	98	69	97	56	103	55	86	54
CATGTGGGACAACCCC	ref_2853_fdr	4	1	2	4	5	8	4	5	5	4
ATCCTTTGCAAGTAGT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTTCCCTATGGCT	ref_2853_fdr	5	3	14	9	5	7	5	6	10	7
TGAGTCTAACTGCGAG	ref_2853_fdr	27	16	26	40	30	32	35	21	29	23
CTAAAGAGCAGTCCAT	ref_2853_fdr	6	16	13	8	10	7	7	5	10	8
TTAGAGCCACTCGAAT	ref_2853_fdr	1	2	2	0	2	1	3	2	1	5
GCATCCTACGTGTGTA	ref_2853_fdr	7	12	9	7	8	3	14	17	10	8
TGTTGGAAGACATGGG	ref_2853_fdr	7	9	8	5	11	9	12	6	15	8
ACGGTGCAAACCTTTT	ref_2853_fdr	50	70	88	51	87	58	69	56	66	64
CTGGGCCTCCACACCA	ref_2853_fdr	7	5	10	6	10	6	14	6	13	13
CAGTGATATGACTCTG	ref_2853_fdr	87	61	94	69	75	57	76	78	97	53
ATATGCGGCGTTAGGA	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
TCTGACTAGCAAGTTT	ref_2853_fdr	6	7	4	6	4	7	4	9	15	7
GCCACTCCCTGTCTTC	ref_2853_fdr	2	6	4	3	7	2	8	4	14	1
AGCATCACTGTGTCCG	ref_2853_fdr	32	25	28	21	27	19	16	29	25	17
CATCTTCTTAGCGGAA	ref_2853_fdr	12	5	16	12	9	14	11	9	12	8
TCCCCGACCAACCAAG	ref_2853_fdr	35	102	43	52	86	38	103	34	138	28
TGAACGCTACCATAAG	ref_2853_fdr	30	58	49	43	42	44	58	44	48	32
TTCGTTCCAGGCTAGT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTGCTTTTAATGC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
AGTAGTCTTAATGTCT	ref_2853_fdr	59	58	66	71	56	53	70	61	73	68
GCCACAAGATAGCAGC	ref_2853_fdr	5	26	17	16	20	14	16	13	10	9
CTGGCAAAGTCTTGTA	ref_2853_fdr	51	40	54	53	56	37	52	51	53	43
TTTTCATCATCGGGCA	ref_2853_fdr	206	201	231	205	203	190	215	163	253	186
AATACAATCAGGGAAC	ref_2853_fdr	14	23	15	21	16	16	11	18	17	13
GGAGCTGTCTTAGTAG	ref_2853_fdr	19	12	16	14	15	12	18	16	22	16
CTTTTACACGGCCCTA	ref_2853_fdr	21	19	16	16	30	15	24	16	25	17
TTGTGTACGGCCGTAG	ref_2853_fdr	12	15	12	11	8	14	14	10	7	13
GTGTTAGAACACATAA	ref_2853_fdr	22	27	18	18	24	20	19	20	34	14
ATGGGCAGGTTTATGA	ref_2853_fdr	46	44	51	48	54	48	46	42	52	40
GAGGATGCGTTACGTA	ref_2853_fdr	21	22	39	21	25	35	21	28	26	22
TAACTTGCAGGGTGTG	ref_2853_fdr	10	11	13	12	12	7	16	12	11	9
TCACATGTGCCCCTAC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GGGATAGGCGTTGTTT	ref_2853_fdr	32	32	25	22	18	26	35	13	42	16
GTTCGCCACCTTAGGT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTTTATCACATGC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CTGACCTAATTAAAGC	ref_2853_fdr	85	108	115	90	93	86	108	78	111	107
CCGGATTGTGTTTCAT	ref_2853_fdr	8	15	21	16	4	13	14	6	13	5
ACTGTTTCACCCAATT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GATGCATCAAACTGCT	ref_2853_fdr	109	124	112	103	103	107	103	92	111	92
AGGTCTACATTGAATC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
ATCACGCTATATCAAT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CGCTACTTTTTTGGCC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
ACTATATCGCTTAAAT	ref_2853_fdr	17	8	15	12	17	17	12	10	12	6
AACGTGGGACCAAGCA	ref_2853_fdr	13	17	24	22	22	27	22	14	25	30
TTCGTGTCGTGCTGTT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
CCTCAACGCGAAATAT	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGCATATCTAGTA	ref_2853_fdr	15	14	14	15	15	14	10	9	12	11
GGGCTAATTATAGAGA	ref_2853_fdr	5	14	15	10	9	8	3	16	14	8
CCCTTGGGATATTCCG	ref_2853_fdr	23	14	23	28	26	31	26	19	20	20
TACTCGCGGGCCGCGA	ref_2853_fdr	57	110	97	80	103	68	120	76	125	60
TAAACTCCACCAGAAA	ref_2853_fdr	15	31	28	17	18	22	27	22	33	13
GGGGGAGCGCCAGACA	ref_2853_fdr	28	44	49	47	39	30	34	41	49	35
GGACCAGGTGGTTGCA	ref_2853_fdr	27	35	58	51	39	36	47	37	45	37
CATGCGAATATACATT	ref_2853_fdr	19	19	19	25	26	18	24	18	28	15
ATCGACCTTACACAGC	ref_2853_fdr	101	102	131	113	124	111	120	96	102	94
TCCTATGGTCCGGGGC	ref_2853_fdr	11	17	17	17	14	11	20	22	24	14
TAACTTGAGAACGGAC	ref_2853_fdr	9	12	18	15	17	12	12	8	7	12
CTTACTTTGTCGGATC	ref_2853_fdr	0	0	0	0	0	0	0	0	0	0
AATTGTGTGGGCCTCT	ref_2853_fdr	6	4	10	5	7	6	7	4	6	5
CAGACTTTGTGTAACA	ref_3262_fdr	49	75	51	34	73	60	86	41	88	34
GCCAAATGAGCGGTCA	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTTGTGACAGCCC	ref_3262_fdr	0	1	0	0	0	0	0	0	3	0
TGTGCTCATTTATCCA	ref_3262_fdr	58	55	58	62	79	56	83	48	77	47
CCAATGCGTGACGAGC	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGTTAAAGTTTC	ref_3262_fdr	1	0	0	1	1	0	2	0	0	0
AAGAAGCTGAGCTTAA	ref_3262_fdr	20	29	27	18	42	19	24	15	36	17
TGTGAAGCGACTCTGA	ref_3262_fdr	0	1	0	1	0	1	0	1	1	0
ACACTCATAGGTAATT	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
CCCTACTATGCGGACG	ref_3262_fdr	3	2	3	1	1	3	4	2	4	2
GTGTTTTATGTGTTGC	ref_3262_fdr	8	9	12	3	20	6	22	3	18	6
GGAGCCATCGGTTATT	ref_3262_fdr	12	12	14	4	17	6	8	13	9	6
TCAAGTTCAAGACTGG	ref_3262_fdr	2	2	4	3	6	0	9	8	4	3
TTGTGACCTCATATCT	ref_3262_fdr	57	64	74	57	55	56	74	45	67	38
CCACAAAGACTGTTCA	ref_3262_fdr	34	45	36	29	48	27	49	36	72	29
ACTGCGAGTTCATGTA	ref_3262_fdr	4	8	1	6	21	10	12	8	10	11
AAGTAAGTCTTCTTGG	ref_3262_fdr	36	47	34	32	49	32	35	30	27	24
TACGTGCCAGTTAACG	ref_3262_fdr	7	18	10	7	16	4	17	8	14	10
ACTCGACCACCTCGAC	ref_3262_fdr	5	8	3	1	10	3	12	1	13	7
CTATTTTCTTGAGCAT	ref_3262_fdr	87	205	133	122	247	101	195	97	206	80
AAGAGTGTACCGATTC	ref_3262_fdr	133	188	169	128	197	122	230	125	251	125
GAGTTTTGGCGGAGGA	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTTGTTGTTGATA	ref_3262_fdr	88	118	104	76	102	95	144	59	106	72
TCGCTTATTCGTCATC	ref_3262_fdr	40	64	38	30	71	41	59	27	59	34
CTCTTAAATCTAGTAA	ref_3262_fdr	5	8	1	6	11	2	9	5	12	5
AGGGATCTGTTAGTAT	ref_3262_fdr	11	12	3	10	12	7	18	9	14	6
TGCGCCTTTGATTACC	ref_3262_fdr	13	24	17	5	15	13	13	6	26	16
TGGTTGCTCTCTCTCC	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
CATGTAGGATCGTTGT	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
ACAGCCTATGAGTTGT	ref_3262_fdr	15	16	12	15	52	15	34	19	42	18
ATGATAGCCCGTATGA	ref_3262_fdr	4	3	1	4	4	5	4	0	3	3
CAGTTTTGGCGGAGGA	ref_3262_fdr	76	115	94	105	139	83	155	69	144	81
CTATACCCAAGTCTTG	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCGAATAAGCTC	ref_3262_fdr	19	44	22	31	46	19	45	31	55	17
TAAATCTGCCAATTCA	ref_3262_fdr	8	13	7	9	14	14	5	6	16	7
ATCAATGGTTTTTCAT	ref_3262_fdr	7	8	6	10	9	6	9	9	3	3
CACATGCAGTTTGTGC	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGTATCCCCGGAT	ref_3262_fdr	8	12	13	7	13	9	25	6	19	2
TTACTCCATCAAACTT	ref_3262_fdr	8	14	9	7	17	13	16	6	26	15
CATATCGGCGTTCCGT	ref_3262_fdr	12	16	13	8	12	19	16	13	17	12
GTCCCAATGTTAAAAT	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
GTAATGACGGCCATCT	ref_3262_fdr	22	13	32	13	21	14	17	19	23	23
CCTTGTTTTGTGGGTC	ref_3262_fdr	7	10	16	8	11	9	9	9	11	4
CAGTAAGCAGTAACGG	ref_3262_fdr	23	39	24	25	29	13	38	15	37	15
GTCATTATTTTAAATG	ref_3262_fdr	6	23	17	12	31	16	30	12	29	22
GTTTTTTTGGTGCTAT	ref_3262_fdr	15	33	18	27	34	19	23	16	36	7
TCTCGCTCTCTAAGTG	ref_3262_fdr	164	331	200	167	252	164	294	133	326	163
GGTCTTCGCGCTCATC	ref_3262_fdr	30	60	32	33	45	30	52	27	52	29
GTTAGTAGGTTGGTTT	ref_3262_fdr	29	41	27	25	32	21	59	27	44	26
AGCTATTGCGGATGTG	ref_3262_fdr	17	34	18	11	44	19	46	16	33	15
GCTTGCGTAGGGTGGG	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTGTATGGGAGAC	ref_3262_fdr	14	16	15	6	20	12	17	11	20	9
TACGAGACGCAGCCTT	ref_3262_fdr	3	9	4	7	21	10	13	5	16	8
CACTTCGGTCAAGTAA	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
ACACACTTCTGTAAGC	ref_3262_fdr	3	17	7	3	13	8	13	7	15	5
CTCTTCGGTCAAGTAA	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
TTTTATTTTACCTGCT	ref_3262_fdr	17	23	15	16	24	15	21	12	24	6
CTACATATGTCAAACC	ref_3262_fdr	3	1	6	9	8	4	8	0	3	3
CAAAGTAAGCGCCCAC	ref_3262_fdr	20	32	17	17	37	11	37	15	36	21
ATTTCTATCCGATTTA	ref_3262_fdr	17	23	21	13	34	13	38	11	34	16
GCTTTTCCTCTGATTT	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
ATAAAAGGCTCTTCAT	ref_3262_fdr	13	28	22	9	26	12	23	11	32	13
AGGCGCAACGGGTATC	ref_3262_fdr	3	4	2	7	6	3	3	2	2	5
GAACGACACTTTCCTG	ref_3262_fdr	47	52	35	34	54	19	60	46	50	36
GATGTTCCTGACGCCC	ref_3262_fdr	19	26	40	23	28	25	30	25	37	22
GGTGACACCGTTACCT	ref_3262_fdr	2	5	6	1	4	2	4	3	4	5
GTCACGCTCCCGGTAT	ref_3262_fdr	36	95	56	38	93	40	125	36	139	37
TTTTTTCCTGCGGGTT	ref_3262_fdr	6	14	10	6	19	4	12	6	19	3
CTGCGTTCTCCTTGAG	ref_3262_fdr	4	33	24	16	34	19	44	15	36	17
CGTGAGGCACAGATCC	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTGCACGGAGTGT	ref_3262_fdr	26	61	32	15	59	27	68	25	65	23
TTTTCACTCTACATGT	ref_3262_fdr	9	12	10	6	10	13	20	12	11	5
GAGCTCGCCAACGCAA	ref_3262_fdr	13	26	15	11	22	12	24	14	14	11
TTCAGTGCCCCGTCGA	ref_3262_fdr	10	27	12	3	33	7	33	10	31	12
CACCCGGAGCAATTTA	ref_3262_fdr	49	57	51	51	88	39	55	40	56	42
ACGGCTCCTCAATCGT	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
CATCGTGTAATTCATT	ref_3262_fdr	188	255	213	185	286	191	250	153	302	134
TTGAAGTGGCCCAGGT	ref_3262_fdr	22	36	26	29	34	17	31	26	61	16
TAAATACACCAGGGCC	ref_3262_fdr	65	97	80	66	109	60	109	71	107	53
TATGTTTCACCTTCAA	ref_3262_fdr	11	21	22	20	25	14	23	8	36	8
GTTGGAGCATTTGCTC	ref_3262_fdr	16	38	31	24	51	27	68	33	53	18
ACTACGCGACTGACGC	ref_3262_fdr	3	14	4	4	15	4	7	7	14	3
TGCTATTCTATAGCGG	ref_3262_fdr	9	18	15	11	25	16	25	12	32	9
CTGCCACATTCGCATG	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGCTCTCTAAGTG	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
TATAGGTGACAGCCCC	ref_3262_fdr	14	19	21	13	27	10	30	12	20	9
TTGATGCCGCCATTTC	ref_3262_fdr	47	44	61	45	45	34	51	35	50	47
TATCGATGTAGATTTT	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
CACACACTGATCTGAG	ref_3262_fdr	18	23	13	17	21	14	33	15	27	22
ATGACCCATCTCAGGC	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGTTCATCGTCT	ref_3262_fdr	6	11	4	3	12	3	14	6	5	5
TTAAGAGCAAGTCGCG	ref_3262_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTGCCAATCCCAG	ref_3262_fdr	14	16	8	6	15	11	12	6	14	11
AATGCGTGTATGTTTT	ref_3262_fdr	31	52	37	32	50	48	55	43	62	31
CAATCCTGTGGGTTCC	alt_3698_missing	10	14	9	8	15	11	13	13	11	10
ATACACAATACGTCCG	alt_3698_missing	19	25	24	30	28	29	33	21	23	20
CTTATAAGGATTTTGA	alt_3698_missing	31	45	33	33	45	36	36	46	44	29
CGAGTTCCCTCTTTAG	alt_3698_missing	2	4	8	3	2	4	1	2	1	1
AGATTATGTATGCTCA	alt_3698_missing	31	39	42	31	35	35	52	26	52	26
CTTTCAGCCGGCTACT	alt_3698_missing	14	24	23	10	20	13	13	18	27	15
TATGTCATCCCGTGAA	alt_3698_missing	0	0	0	0	0	0	0	0	0	0
TTAAATCACACCTGGC	alt_3698_missing	9	14	6	7	14	9	17	19	11	11
TCACTGCTGCGAATCA	alt_3698_missing	14	12	15	9	15	27	14	12	19	10
GTTTCATATTTCGACG	alt_3698_missing	9	19	6	11	4	7	7	8	12	5
TTTTGTTATGCTTTCG	alt_3698_missing	57	42	88	57	42	57	47	48	53	45
CTAGTCTGTGTCATTT	alt_3698_missing	4	3	3	5	6	6	10	5	3	1
CACTTGGCGGTAACGA	alt_3698_missing	0	0	0	0	0	0	0	0	0	0
CGTCCATCAATCTCTG	alt_3698_missing	12	31	24	12	36	10	27	15	21	9
CATGTGTACTGGCTCC	alt_3698_missing	0	6	3	5	4	2	2	3	7	4
GGCACGAAGAAGCAGT	alt_3698_missing	18	26	19	28	26	16	28	20	24	24
GGGGTTCACCTGCAAC	alt_3698_missing	0	0	0	0	0	0	0	0	0	0
CTCAGTACGATGCAGA	alt_3698_missing	2	5	1	0	4	1	1	2	5	1
AACTATCTGGTCCCTT	alt_3698_missing	5	12	16	7	14	15	18	9	25	5
GTGTTACCTCTTATTC	alt_3698_missing	13	33	35	15	21	20	27	21	37	17
ACCAGATTCTGGGAAT	alt_3698_missing	7	12	13	9	17	12	17	6	19	7
CGGGGATTCTAATAAA	alt_3698_missing	8	3	4	8	7	14	4	7	10	6
GGCCTGGCTGTATTTA	alt_3698_missing	0	0	0	0	0	0	0	0	0	0
GTGTACGACTTGCATG	alt_3698_missing	13	14	13	12	24	11	18	9	17	17
CGCCGCCACTCACTGC	alt_3698_missing	37	42	29	39	67	40	52	49	39	34
GACGTTCGACTTGTGC	alt_3698_missing	5	33	6	16	45	4	28	16	30	9
CGTTCTACACGCGAAG	alt_3698_missing	0	0	0	0	0	0	0	0	0	0
TAATCGTATTTGATAC	alt_3698_missing	19	18	19	14	10	13	25	11	17	10
ATGGCTTCGACCTTGT	alt_3698_missing	59	41	58	39	64	40	50	48	70	52
ATGAATTATACTTGTG	alt_3698_missing	7	10	5	10	11	5	13	12	16	8
GGCTATAATTTGTATC	alt_3698_missing	0	0	0	0	0	0	0	0	0	0
GAAACATGACATACAA	alt_3698_missing	0	0	0	0	0	0	0	0	0	0
GCCGTTTGAGTCTCGC	alt_3698_missing	10	18	26	10	18	9	23	16	30	11
TGAAATTTATGTTAAA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGCTATGACCCTGTGA	ref_1261_reverse	17	19	21	17	21	15	24	15	19	12
TATACGACAGTTAAAG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTATATCGGTTGG	ref_1261_reverse	5	5	11	6	4	6	3	1	10	5
AGGGCGGTGACTTCGG	ref_1261_reverse	27	20	30	21	31	15	24	14	19	18
TAGGTCTGTGACCCGC	ref_1261_reverse	16	17	16	18	20	13	14	22	20	20
TGTGCTATCCTTTTAC	ref_1261_reverse	151	153	186	123	197	148	175	129	175	127
AGCTTCGTACCTAGGT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCTAGCCCTGCGG	ref_1261_reverse	93	97	99	92	96	95	104	98	108	88
GAATGTGATTGCATAG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GTATGGCCGATCTGAG	ref_1261_reverse	11	19	19	15	11	10	9	9	19	11
GCTTCTGATTATACCG	ref_1261_reverse	100	117	126	111	129	100	137	84	135	87
CACGGCCCCGACTTAT	ref_1261_reverse	61	51	89	66	79	63	82	66	88	55
CTGGTACACGATGGTG	ref_1261_reverse	55	48	64	66	53	56	53	59	57	42
GACTATTGAGTTGTAA	ref_1261_reverse	54	38	37	34	41	42	38	34	54	46
CATTTGTTGTGCGCGT	ref_1261_reverse	347	369	420	364	370	363	382	330	409	315
AATTTCACCGATCATG	ref_1261_reverse	98	112	151	116	100	115	123	117	106	95
ATACCATGAATGACTC	ref_1261_reverse	39	41	63	38	45	51	48	33	53	47
AGTTTTGTATTTTAGC	ref_1261_reverse	10	11	11	11	18	6	16	7	17	13
CAGCACCTCACTTTGC	ref_1261_reverse	15	23	21	22	22	19	19	22	17	13
ACCGCGTCCTCTGCGT	ref_1261_reverse	8	25	8	5	27	9	36	7	30	5
AGATTTGACCGGGTAC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAGCTAAAAATGG	ref_1261_reverse	93	85	100	123	80	95	96	99	87	80
CTCTTGGTAACGGTAA	ref_1261_reverse	34	40	42	25	41	40	53	36	40	45
GTTTTGCTGAATTAAG	ref_1261_reverse	56	61	87	66	55	79	63	66	56	48
TGGGAGGGGGACCCCC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGTCATGTCGTAC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCTCTAGTTGATG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGATTTAGTGCACCAT	ref_1261_reverse	185	175	245	184	178	183	175	179	194	183
AGACTCTCGCACTCAT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTACGGTCAACTC	ref_1261_reverse	8	4	3	2	8	3	9	3	5	3
CCCCACCCCAGACAGA	ref_1261_reverse	138	130	147	129	130	153	118	132	130	104
GTGATTTTGGCATCCT	ref_1261_reverse	171	156	190	165	192	162	171	134	198	115
GTCTAGGTCGTCATTC	ref_1261_reverse	104	162	137	137	134	107	160	116	149	117
TGCAGACCACATATGA	ref_1261_reverse	50	73	63	54	71	46	62	56	76	50
CGCTCTGAAAGATAGG	ref_1261_reverse	27	14	26	16	20	26	22	12	25	11
TCGACCGAGCGTGAGT	ref_1261_reverse	10	16	14	10	21	13	22	11	14	11
GGAGGGCATCAGGACG	ref_1261_reverse	292	216	345	268	206	291	266	273	254	241
TCCACTGGTCACAGCT	ref_1261_reverse	8	2	4	3	14	8	8	5	5	13
TGTTCAATATGAGGTC	ref_1261_reverse	20	22	34	18	18	13	15	19	22	17
TCGGGTTTTGCCTTGG	ref_1261_reverse	24	22	21	30	29	13	22	33	22	17
ATTTTCATATTCGCCG	ref_1261_reverse	105	127	150	159	120	104	137	140	85	136
GAAACGATTTGTCTTG	ref_1261_reverse	129	105	122	107	135	115	124	109	133	107
GCGAAGGACAAGCTGA	ref_1261_reverse	37	42	37	35	35	37	35	32	31	33
TGCACATACTAAATTG	ref_1261_reverse	62	60	48	49	63	52	48	60	44	46
GTCGTTCGATGTTAGG	ref_1261_reverse	1	0	2	2	3	3	1	0	0	0
GTAGGCTCCATGAGGA	ref_1261_reverse	10	19	23	13	6	10	13	18	14	7
TTCACCTTCGCTGTTA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGTAATCTTATTC	ref_1261_reverse	460	440	592	468	450	438	441	434	441	396
TGGCGGTCTGTACGGA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
AAGATCTAGCGGATTC	ref_1261_reverse	39	56	71	77	72	48	49	34	64	42
TTACCCGAAAAAGACT	ref_1261_reverse	0	0	1	0	0	0	0	1	0	0
AGTCGTTCATTCGTAG	ref_1261_reverse	20	21	34	13	25	24	26	16	20	19
ACGTCGTTCCACCTGA	ref_1261_reverse	24	14	23	27	30	21	20	11	23	17
GTCCATCGATCTACTG	ref_1261_reverse	72	80	76	71	89	47	104	46	91	72
TGTATTGCACAGTAAT	ref_1261_reverse	86	100	99	75	128	78	108	85	102	94
ATCTCTTTTACAACAG	ref_1261_reverse	87	108	104	87	92	84	92	75	90	83
TATTTGCCGTTTCCAT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTTAAACTGTCTT	ref_1261_reverse	51	54	74	60	79	72	61	58	64	43
AGGTCATCCTTAGCTT	ref_1261_reverse	198	210	207	158	199	175	212	147	237	141
TGCCATTAGACTGTCT	ref_1261_reverse	79	104	87	105	97	86	104	85	107	69
GTGCCAAACCCATATG	ref_1261_reverse	132	134	158	147	170	138	160	119	189	108
GTGAGGTCGAATATCT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCTTCAGTACTCC	ref_1261_reverse	16	28	18	15	17	11	26	13	31	17
GTGTGTCTTGAGCTGT	ref_1261_reverse	2	0	0	0	0	0	0	1	3	1
ACCGATCAGTTGGAGA	ref_1261_reverse	66	132	76	94	107	82	101	77	97	62
GTATGCGTCCACATAA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGGTATGACCTTT	ref_1261_reverse	96	80	114	115	93	93	97	112	117	89
GATCGGTCAACCCGTT	ref_1261_reverse	8	5	9	14	5	13	6	6	10	8
TTTCTAGTTAAAACTT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCATATGCGATCAAAA	ref_1261_reverse	63	50	74	48	56	59	63	69	61	50
CAAGGGCCCAGAGACT	ref_1261_reverse	7	6	6	10	3	7	5	8	9	7
TGACGTAACCGTCCGA	ref_1261_reverse	45	42	62	43	33	45	48	35	38	54
TGATCCGGACTGGGGT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCGACATTCTTCA	ref_1261_reverse	85	86	114	106	84	94	83	79	98	90
TCACTGTGGGACTCGT	ref_1261_reverse	46	37	54	67	54	62	61	47	55	56
TTGACGGGTCTCGGGC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGTATGTTGAGTC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGTAGTTCGATTTTAC	ref_1261_reverse	123	164	156	145	157	109	136	126	160	98
GTGACTGCCCTCGGCG	ref_1261_reverse	100	85	103	90	103	91	91	57	91	80
GCCTCATAAGCTTTGG	ref_1261_reverse	167	157	189	158	168	145	159	144	158	133
CCGCCGCTTAACGTCG	ref_1261_reverse	16	26	12	6	19	17	10	11	19	11
GCGCTTCCACATCAAT	ref_1261_reverse	96	85	132	120	68	86	82	97	108	83
TATGCCAATGATCGTG	ref_1261_reverse	59	69	53	62	76	42	48	44	66	50
TAAATAACCTTCATGA	ref_1261_reverse	105	106	126	101	112	109	135	94	143	89
CAACCTCAGGCTAAGG	ref_1261_reverse	51	55	71	51	69	50	83	56	72	63
CTCGGCGAAAAGTCCC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCACATAACACAA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TATGCTTTGGTTTCAC	ref_1261_reverse	5	7	15	10	15	7	10	7	7	5
GTTATGCCCGAGCACG	ref_1261_reverse	33	34	48	51	41	41	45	38	39	47
ACACAGACTTCCTCAC	ref_1261_reverse	154	145	209	169	138	126	134	131	147	156
TTCTGCTCGAGAATTG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCCGGCGTTCCGT	ref_1261_reverse	7	10	5	7	12	10	13	7	11	12
CGTATTCTTTTTTATT	ref_1261_reverse	88	69	107	106	61	85	86	79	81	86
CGCATTTAATCGTATC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTTGCTGTTGTTA	ref_1261_reverse	227	209	289	280	240	212	270	231	255	188
GTACCTTCTCGGTCGA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTGCGTCAGTAGA	ref_1261_reverse	171	167	208	153	183	126	170	162	152	131
AAATTTTCGGCGATCC	ref_1261_reverse	34	23	36	27	32	25	23	23	35	31
GTGCGTGATTTCTCGA	ref_1261_reverse	56	64	51	34	55	40	51	57	75	47
CTCCTAAGGGGTAGGG	ref_1261_reverse	8	6	6	7	12	17	9	7	8	5
GTTCGATATAATTGGC	ref_1261_reverse	43	62	71	48	69	69	62	39	57	63
CACAGGTTTCTTTTTC	ref_1261_reverse	135	132	185	173	143	146	122	162	141	126
TTCGAAATCTCTGGGA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGCTACGTCGCAGCTC	ref_1261_reverse	26	33	63	41	36	31	28	29	29	30
AGACTTTCCGTTCTGC	ref_1261_reverse	20	27	45	33	30	31	25	27	26	26
TTCCTTGGGAACGTTT	ref_1261_reverse	67	70	88	71	79	55	72	58	74	53
TCAAGAGATATACATG	ref_1261_reverse	88	103	105	93	93	80	87	90	83	80
CACCGTCCCTTAGCTA	ref_1261_reverse	6	2	5	6	3	8	10	6	5	0
TCACTTGTTAATATAG	ref_1261_reverse	14	27	17	12	26	19	26	8	20	19
AGATTTGACCGGGTGC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGTTGTCGCGGGA	ref_1261_reverse	3	2	2	4	9	4	5	6	4	4
GGGACACCTTCAAAAC	ref_1261_reverse	144	128	151	131	131	122	139	112	146	114
TGGATAGTCGGTACGC	ref_1261_reverse	69	64	99	59	66	98	74	61	69	67
GCCTATCTCCCGTTGG	ref_1261_reverse	47	26	43	36	60	46	26	48	55	38
CCTGTTTGGAGCCGAC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGTTTGTGCTGAG	ref_1261_reverse	102	127	128	120	121	113	132	111	135	102
TGAACCTCCATTGCCA	ref_1261_reverse	50	46	76	58	47	71	62	39	73	60
CGCGCTCCAACCTTAT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGTACGACAATATATC	ref_1261_reverse	18	21	39	28	31	29	39	25	30	27
CCCCTCTCCTTGCAGA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GACTTGGGAAGTCTAA	ref_1261_reverse	72	105	97	82	82	64	89	56	78	62
ATTCGGGGAGACTGTC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGACGGACCTTTG	ref_1261_reverse	47	38	53	42	40	46	44	46	53	40
TTATCCCCTATCGGGC	ref_1261_reverse	52	70	49	40	55	45	66	26	80	40
CAAACTTCTTATTTAA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GAATTTAAGTGGAGCG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGATTATGCCAAGTGA	ref_1261_reverse	64	68	70	76	59	61	67	60	62	55
CGCTTAGTCTCTATTC	ref_1261_reverse	54	47	57	50	50	30	33	52	46	40
TGTTAGCTTAAACGCG	ref_1261_reverse	115	150	190	142	157	129	144	128	126	105
TTCATCTAGGTTTGTG	ref_1261_reverse	52	68	58	41	72	48	71	46	84	45
GACTTGTACGTCTCTT	ref_1261_reverse	24	20	31	30	36	29	30	25	30	16
TTTTCCATTGATCTTC	ref_1261_reverse	62	65	86	68	70	52	50	59	62	56
GTGTTACAAACGGTGT	ref_1261_reverse	31	38	47	40	42	25	29	26	34	27
ACCGTTCGACGCTAGG	ref_1261_reverse	26	40	33	33	28	27	34	22	45	23
ACTCAATAGCGCGTCT	ref_1261_reverse	47	31	44	37	42	36	30	37	51	43
AAGCAATATCTAGAAC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGATATTTTCTGA	ref_1261_reverse	110	105	122	114	95	100	100	80	99	81
CTAAATAAGAATCTAT	ref_1261_reverse	29	19	23	26	20	22	14	19	25	20
TGATTCTCTAGAACAG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
AGAGCATTGCTCTTGC	ref_1261_reverse	46	74	61	53	72	32	71	40	65	44
TGTTCGTCCGACACCG	ref_1261_reverse	50	34	49	56	44	37	41	38	36	37
TGATTTCATTTCGGTA	ref_1261_reverse	62	77	81	70	70	61	64	70	90	63
TCATCTTCACAAGTGC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TTTATATTAGGTGGAG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTTGGACAACACG	ref_1261_reverse	59	95	51	54	99	37	105	46	124	57
TTCTCCGTTGAGACAG	ref_1261_reverse	284	283	310	240	300	257	346	236	356	192
CTACGCTAATTTTACT	ref_1261_reverse	26	28	33	20	33	23	29	28	31	36
ATCGGCTTAATTAATT	ref_1261_reverse	23	21	28	18	29	20	21	24	26	22
TTGGCTCACACATGTC	ref_1261_reverse	94	89	147	99	149	106	115	97	125	108
TCTCTGTGTTTTCTCC	ref_1261_reverse	9	8	22	11	2	12	12	12	6	13
TCGAGCCTTAGTAATG	ref_1261_reverse	96	70	110	88	83	73	104	68	91	79
GTTCTTAACATTACCA	ref_1261_reverse	49	36	50	44	54	34	39	36	40	46
ATCAGGTGGCGTACCG	ref_1261_reverse	62	95	122	79	123	75	83	54	101	50
CTTAAGGGAGTTCCTT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCAGTTGATGGGT	ref_1261_reverse	90	223	107	89	252	88	239	73	219	87
GGGGCTGCGGCTAGCT	ref_1261_reverse	53	47	65	68	52	53	37	46	78	48
CGGATAGGTTTTTTGC	ref_1261_reverse	19	15	25	39	29	15	31	11	25	30
TTTCCCTTCACCTTCA	ref_1261_reverse	28	25	38	26	35	18	23	27	24	24
GAACTGTCATTTGACC	ref_1261_reverse	1	1	3	4	1	2	6	1	1	2
GAACTGGTCCGATCGA	ref_1261_reverse	66	67	85	69	108	60	77	61	88	53
TCTTCTATGGGTCCAA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
AGGTACTAGGTTCACC	ref_1261_reverse	35	37	49	53	42	36	49	38	53	34
CCTTACCCATCGTCCT	ref_1261_reverse	24	32	34	19	35	26	39	21	42	20
TCAAAACTAGCAAGTG	ref_1261_reverse	55	48	55	43	49	39	52	44	60	39
AACGTTGGGAACTACT	ref_1261_reverse	112	103	136	108	117	100	135	106	127	85
GTCGGAAGTTATGGGT	ref_1261_reverse	100	67	119	103	92	95	96	81	101	82
CCCCGCCGTTTCTCTG	ref_1261_reverse	6	45	13	9	45	6	40	5	42	5
CACAACAGTGATTCGA	ref_1261_reverse	57	56	84	62	62	43	57	56	65	43
CTCGAGAGACTTTTGA	ref_1261_reverse	11	15	13	14	20	11	21	11	13	16
CTCCATAATATTAATG	ref_1261_reverse	55	57	52	66	44	40	51	61	58	50
GTTGATAGTCATAATC	ref_1261_reverse	197	229	253	224	221	199	261	218	296	180
CTCGACTTCCAGTCCC	ref_1261_reverse	20	30	34	19	32	26	23	31	33	35
TCACTCTGGGCGCATG	ref_1261_reverse	58	118	90	80	144	69	133	76	145	59
TAATCTCAGTAGGCAC	ref_1261_reverse	32	32	31	49	36	46	37	37	34	21
GCACAATGTGTGTTCC	ref_1261_reverse	6	3	14	6	7	3	12	5	3	5
CGATAGGACTCATAAG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGCTTTTAGGGTC	ref_1261_reverse	78	54	70	65	81	79	88	75	70	55
GTCAGTGATTGGTAGA	ref_1261_reverse	156	170	169	122	152	112	178	135	175	116
TAAAGACGTGTGCTTA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGAGTCGTTTTCA	ref_1261_reverse	59	52	64	51	66	58	55	55	48	56
AGGCGTCAGTCCTTGC	ref_1261_reverse	11	3	1	3	5	6	6	1	4	5
TGGATCTTTGTAATTT	ref_1261_reverse	65	74	79	77	70	79	97	59	72	54
TGATCGCGGGTCCTAA	ref_1261_reverse	29	18	28	23	19	26	28	30	21	17
GTAACCGACATTCTCT	ref_1261_reverse	17	17	21	15	22	23	22	28	23	23
GGTGCCCTCAGTCTAC	ref_1261_reverse	43	47	58	46	33	23	40	27	40	35
AATAACGGAAAATGCA	ref_1261_reverse	95	134	154	147	105	124	134	120	152	105
GTGGGAGTGGGCATCT	ref_1261_reverse	173	205	260	201	170	184	213	183	235	167
AGCGGCTAATAGTCCA	ref_1261_reverse	60	70	88	68	77	60	85	65	69	44
TGATACATCTCAAGCC	ref_1261_reverse	60	59	66	63	60	52	51	62	69	46
GCTTTCTGTGAAAAAT	ref_1261_reverse	68	78	78	71	78	88	75	73	71	76
AGTGGACAAGCTTGCC	ref_1261_reverse	26	23	36	39	20	25	32	22	34	18
TCGTCTTAACCCGGAC	ref_1261_reverse	32	31	37	25	23	46	32	31	29	19
GTGCGCAAGCCAACGC	ref_1261_reverse	52	44	61	43	64	51	54	49	67	28
GGTCGCGTAGACAATC	ref_1261_reverse	35	57	41	40	48	44	53	32	52	28
TTGGGAAAACTCTAGA	ref_1261_reverse	14	18	24	21	21	28	16	16	27	18
CGTGGGAGCGAGACTC	ref_1261_reverse	72	87	100	85	95	71	74	84	74	76
TGCAGGAAAACGGGCC	ref_1261_reverse	104	96	101	90	104	66	105	86	98	90
GGGGGCTAGCATGGAC	ref_1261_reverse	85	68	81	88	96	52	70	57	71	64
ACAGCGCCTGACGCGG	ref_1261_reverse	27	35	42	28	30	21	26	22	22	34
TCGCAACTCAGGGTTC	ref_1261_reverse	33	28	48	40	32	30	36	40	43	20
CGGAGGCGCCGGCTCG	ref_1261_reverse	16	12	13	15	15	8	8	18	10	5
ATGTAGTCACTTCAGG	ref_1261_reverse	49	51	62	45	44	50	50	53	49	50
TGGTTCCGACTTAGCC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCATATCTCTTAT	ref_1261_reverse	162	168	236	165	182	163	181	168	210	172
CTCAATCCTTTTCAAA	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTCCACTTAATTG	ref_1261_reverse	91	84	107	76	101	75	106	75	100	83
GCGTTCGTCCTACCAA	ref_1261_reverse	38	54	42	51	48	40	40	42	52	39
TGCCTCCGCTGTCGGT	ref_1261_reverse	170	152	168	166	171	125	171	151	186	141
CTCACGGCCTGGTTTC	ref_1261_reverse	39	42	40	40	40	27	29	38	41	28
TTGGAAATCCCTGACC	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
GGGTAGGTTCTGGGGT	ref_1261_reverse	1	0	2	2	0	2	2	3	4	5
CGTGTTATTGGCCCTG	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TTACTTGACAGATATT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
CGGCATACGCGCCTCC	ref_1261_reverse	130	155	173	135	135	93	170	97	157	99
TGAGCCGGGTCATAAT	ref_1261_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCTTGCCTGACGT	ref_1261_reverse	98	88	140	123	86	130	84	98	77	89
ACTGTCACAGAAATTA	alt_3187_RC	11	13	14	14	16	17	8	12	12	20
AATTCTAAATATGAAA	alt_3187_RC	0	1	0	1	0	0	0	0	0	1
AGTCTGTCCAGTTATT	alt_3187_RC	60	73	67	60	62	57	69	43	80	49
CAGTCGCACATATTCT	alt_3187_RC	46	95	51	52	93	49	105	49	86	39
AAAGCGTGAGAACTTT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TGCCCAGTCCCAGACT	alt_3187_RC	3	7	6	7	5	4	4	7	4	2
AGAGTGTGCCTGTTAG	alt_3187_RC	8	6	7	10	6	3	8	3	7	5
TAGGTGGAAATTCCCA	alt_3187_RC	44	33	51	39	30	28	40	30	41	31
TACACGCGACGTAAAT	alt_3187_RC	38	30	53	35	36	37	47	28	37	26
TAGATCCCACTCGTGT	alt_3187_RC	11	4	10	4	9	7	6	5	6	8
ACGTATTAGAGACTCA	alt_3187_RC	372	324	402	356	322	340	337	339	333	256
ACTCCTGTCTGTTGTA	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CAGGGTGTCTACGTTA	alt_3187_RC	15	13	21	16	18	19	21	16	16	9
ATGCAGGCGGGACGGT	alt_3187_RC	28	15	30	14	40	30	27	24	18	27
ACTGGTTCGCCCTAAT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
GTCTCTTCGGCTGCCG	alt_3187_RC	68	60	99	86	65	76	77	73	68	73
CTAGAGGGTATTTCTT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
GGAGCACCTTACAGAA	alt_3187_RC	397	379	517	426	312	387	331	359	369	337
ATTCAGATCGCAATCC	alt_3187_RC	25	29	40	39	29	34	43	43	32	31
TTCATCGCCTTCTTGC	alt_3187_RC	11	21	15	15	9	13	19	23	13	18
GGAGAGCAACCAACTT	alt_3187_RC	65	82	80	75	65	71	50	54	67	52
CCGCCCTTTAGTAAAT	alt_3187_RC	149	146	180	134	162	135	134	140	169	123
AATTGCCTGTTTCCGG	alt_3187_RC	43	26	50	53	23	44	20	51	24	38
ACTATTAAGTGCACAA	alt_3187_RC	23	58	50	53	43	43	58	48	44	39
AATTTTCATTCCGTAA	alt_3187_RC	10	12	24	21	22	19	21	16	16	20
TTAACGCCGGTATGAT	alt_3187_RC	18	10	12	16	14	16	12	13	8	11
CTGGGGACACAATTTC	alt_3187_RC	8	8	4	3	4	7	2	6	3	1
CCTTTTGTTGCAAAGA	alt_3187_RC	21	25	35	24	27	17	27	20	30	19
TTGATGCGCATATTTC	alt_3187_RC	64	44	61	50	55	50	57	39	62	46
CGTACAGTCCCGCTCA	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CAGTCTTAATTTCGTG	alt_3187_RC	18	60	19	19	54	18	73	13	53	21
TTCAAGTTTGGAAATC	alt_3187_RC	27	7	16	26	19	20	14	15	23	18
TCGCATTCTTCGGTAT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TTCGTGTCCGAGACCA	alt_3187_RC	21	32	28	31	22	21	32	19	28	24
CAATGCTCGGGGTCCA	alt_3187_RC	11	14	22	8	10	8	15	10	14	17
TAACTGAACCTGCCAA	alt_3187_RC	7	5	10	4	3	2	3	5	5	4
TTCTTGCGGCTATACA	alt_3187_RC	31	26	26	18	33	24	40	28	29	29
CAAGGGCCATTTGCTT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
ACACTCTGGGGGGTTT	alt_3187_RC	11	19	11	18	11	12	27	15	31	9
CCCTGTATTGTCGACA	alt_3187_RC	13	29	2	9	23	5	17	10	23	9
GTCGTGATCCCGCGCG	alt_3187_RC	95	96	136	99	77	111	68	100	108	85
CTATCATTGACTGCTT	alt_3187_RC	9	18	11	8	11	5	21	4	28	3
TGATACTTGGGTCTAG	alt_3187_RC	52	28	55	38	60	32	38	46	46	46
TGTTCCGCCTAGACCC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TTAATTTCTTTGTGGA	alt_3187_RC	20	14	28	23	22	31	24	31	21	32
TAGGTTTGTCGTAACC	alt_3187_RC	27	35	36	36	42	27	34	25	39	30
TGCTTCTAAGTTTAGT	alt_3187_RC	43	60	64	39	41	48	37	37	67	49
CTTCGATTCGGTGTAT	alt_3187_RC	25	26	28	21	19	21	20	15	24	18
GAGCTGGTTTTGTCTG	alt_3187_RC	10	11	25	20	13	18	16	18	24	13
AAGCCTTATGTTATCC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TTAGACTGTCACAAGA	alt_3187_RC	61	57	68	59	60	54	49	59	57	53
TTGTTACCGCAAAGAA	alt_3187_RC	238	164	232	263	223	210	200	255	212	194
TGAATCGCCTCAGAGG	alt_3187_RC	35	27	24	45	27	35	26	40	36	22
AAGATGTTTGGGGCTT	alt_3187_RC	14	10	14	11	7	12	6	6	5	5
TATTGGCCGTCGGATC	alt_3187_RC	80	83	99	74	104	86	84	70	74	63
CGCGATGGTTTGGTTC	alt_3187_RC	41	39	67	50	47	45	48	42	44	50
GGCTTCAGTCCCACTT	alt_3187_RC	41	47	76	55	52	57	60	43	56	46
AGGTACATAGCTTCTA	alt_3187_RC	30	44	32	22	30	34	29	31	41	18
GCTCGTGATCGGAGCG	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CAGCTATAGGGTTCAG	alt_3187_RC	26	42	34	33	45	24	38	16	39	20
TGCCTTCTGTGCCCTA	alt_3187_RC	48	46	84	46	55	47	44	43	54	44
CGAGTCTTACTACATA	alt_3187_RC	34	38	55	47	36	44	34	41	34	50
GCCCGACAGAACGAGA	alt_3187_RC	20	23	19	32	37	25	35	30	36	25
AATCACTAAAACGTGG	alt_3187_RC	74	23	109	96	20	75	29	81	19	72
TCGGCTGGAGTTGTTA	alt_3187_RC	146	139	167	153	126	172	144	150	119	151
TGTCGGAAAGAGCAAG	alt_3187_RC	64	71	82	88	79	78	82	88	72	65
CTGTTTCTTCAATGTC	alt_3187_RC	46	51	74	51	51	57	43	39	51	53
TCGACGCATCTGGATC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CTGGACTTATTTAACT	alt_3187_RC	103	111	121	88	101	101	106	94	83	87
ACATTCAGTGATTTAA	alt_3187_RC	28	23	27	20	19	32	35	25	28	22
TCATGGCTCTTGATAA	alt_3187_RC	121	125	187	163	137	153	138	179	137	132
AATTGTCTGATGCTAC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
GCAGTCCACCTAATTT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CCTCTAAAAATGGTTT	alt_3187_RC	57	42	73	56	48	53	62	45	56	38
TTCTCCTTCCACAGTC	alt_3187_RC	8	9	12	6	7	12	10	11	11	16
AACTCCTAAGAGAATG	alt_3187_RC	8	9	4	12	18	9	18	7	15	8
TATCTCGGCGAGATTT	alt_3187_RC	74	45	62	73	47	59	44	40	60	46
ATTAAGCGGTGCAATA	alt_3187_RC	6	5	11	14	4	12	3	9	8	7
TTTTAATACGCCAGCT	alt_3187_RC	17	16	15	8	21	21	15	11	17	16
TGGTTGCGCTGTTGAC	alt_3187_RC	121	93	135	117	100	104	104	97	101	99
CTCGCGAACGCTACGC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CCTGTTTACAGCCGGG	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TTTCAAAATTCTTAGT	alt_3187_RC	2	1	7	2	3	3	2	1	0	5
GCCGGACGTCCCAACG	alt_3187_RC	103	104	167	124	112	115	112	121	119	92
GCCGAATTACGTGCCT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CGTGGTACCTCGGACG	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TCACGGTAACTTTTGG	alt_3187_RC	1	3	7	2	2	0	1	0	2	2
ACGCTGTGTTTGGGCT	alt_3187_RC	1	0	1	1	1	2	1	1	2	3
ACAACGATTTATGGCA	alt_3187_RC	61	54	70	67	46	55	47	45	47	73
TTAACATGAGCTTTGT	alt_3187_RC	112	92	107	137	108	123	97	110	125	89
CTTGGTATCTCCTAAG	alt_3187_RC	19	16	13	19	19	21	19	10	17	10
AATTGTAAGATCCGTC	alt_3187_RC	78	80	94	94	55	77	55	63	74	61
CTTGAGTTGCAGCTTC	alt_3187_RC	34	44	74	40	47	50	51	43	64	42
GCCTTTGCTTGGATAA	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
ACTGGCGATTCTCGGT	alt_3187_RC	172	202	252	218	231	167	211	166	201	158
TCAACCGCACATCTAG	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
GGTTTGGTATCCGCAA	alt_3187_RC	35	21	45	35	26	37	26	28	28	23
CAATCCTTGCTCTGTG	alt_3187_RC	11	17	11	28	13	9	13	16	16	19
TCCCGCTCAATGGTAC	alt_3187_RC	2	5	7	3	7	4	3	5	3	5
TTTTGCGCCTTCCGTT	alt_3187_RC	82	84	113	78	72	90	81	105	76	101
GCACAGCTAGGCAGAG	alt_3187_RC	8	14	18	7	18	9	21	6	13	14
ACTCATGTCCAAATCG	alt_3187_RC	2	9	2	5	3	3	11	3	6	2
AGTCATCCCACACGGC	alt_3187_RC	16	34	17	18	60	15	52	11	64	19
TGTACTTCGCATGTCG	alt_3187_RC	13	12	24	19	12	9	8	11	12	14
CTTTCAATATGCTTAT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CTGCAATCTCGGTACC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TGATGGAATTAAGGAT	alt_3187_RC	21	22	25	24	31	30	17	22	33	25
TTTTATGTAGTCTGCC	alt_3187_RC	41	24	52	30	30	65	34	38	32	31
AATCGATGGCGCCTGC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
GATCAGGCATATCATT	alt_3187_RC	73	55	59	65	47	68	52	55	44	61
CAAGTTTACTCTTTTG	alt_3187_RC	62	67	86	79	74	69	67	69	67	59
TCCTGTGAATTACAAT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TAATTCTAGATTTTAC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TAACGTTATTCACTCA	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TTCAGGGCTTGCTAGC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CGCGCATTGGTTTCAA	alt_3187_RC	44	46	53	45	50	41	57	29	54	44
TCCCCGTTTGGCGTAC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
GGTGGCGGTATTTCAA	alt_3187_RC	4	1	3	1	2	0	2	1	2	0
TGTACATGCTTGTACT	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TTTCTTTTGCTTGTGC	alt_3187_RC	23	38	35	39	36	39	45	35	44	31
GCGTTGGCATATCGGA	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TTCCTCTATTTACCCT	alt_3187_RC	33	45	54	41	40	32	48	33	49	44
CCCTCTGTTGGTCGTC	alt_3187_RC	2	7	4	5	2	4	8	3	5	3
CGCTACCTCCACCAGA	alt_3187_RC	61	73	70	69	72	49	87	58	73	48
CGGATCTCCTATTGAA	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
TCTACTCCGCTTTATA	alt_3187_RC	9	14	15	11	26	10	18	10	22	18
CAATCCTATTTTGAAC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
ATACCGCTTCAGTGTC	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CCATTGGCGATTGGCA	alt_3187_RC	0	0	0	0	0	0	0	0	0	0
CAGTTTTACGTTGTAT	alt_3187_RC	18	30	20	22	17	27	22	23	27	14
AAAAAGTTACTTTCTG	ref_1841_upstream	19	16	28	29	26	16	12	20	15	12
TAGTGTCTGGGTCTTT	ref_1841_upstream	56	59	110	83	67	90	58	111	57	87
CCTTATCTGGTCGTTG	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCCGCTTACACCT	ref_1841_upstream	46	38	61	49	30	38	41	42	28	30
AGTGAGAGGCAACGTT	ref_1841_upstream	35	19	42	48	23	31	25	25	26	30
TCAAGTTACGCCCCAG	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
CCACCTGGCGGAAAAT	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
ATATACGGACTGATTT	ref_1841_upstream	200	120	272	199	138	193	99	189	128	176
AAAGTAATGACGTACA	ref_1841_upstream	29	18	43	27	15	31	19	37	14	26
TACGCCACACTCCAGG	ref_1841_upstream	49	40	79	47	46	46	38	48	35	38
CCCTCGTCAGGCACAT	ref_1841_upstream	28	25	20	20	31	30	25	30	21	22
TAGTATTCGTTTGTCG	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
AGGATCAGCCGTTGGA	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGGTCGCTCGGTC	ref_1841_upstream	54	25	55	46	25	40	17	30	27	35
CACGCGACAGCACGCC	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTGACTGTGATCG	ref_1841_upstream	2	2	1	4	1	0	1	2	4	3
CTTCATCCCTGATAGT	ref_1841_upstream	58	36	72	65	44	41	43	56	54	51
TTCTCATCTCCCTTAG	ref_1841_upstream	24	9	19	18	19	11	19	15	14	12
TGCGTTGGTGATCTAT	ref_1841_upstream	66	41	80	60	50	82	50	63	41	72
ACCCGACTTGGGTTCG	ref_1841_upstream	7	9	18	14	2	16	8	10	8	10
CCGGGCATAATCTCAA	ref_1841_upstream	17	12	12	19	10	17	10	15	11	8
CAGCTCCCTGCATACT	ref_1841_upstream	21	8	27	33	16	13	15	24	15	16
GACTGTGGATGTCGTA	ref_1841_upstream	258	149	288	263	126	267	138	231	165	217
CGCTCGATAAGCTGAC	ref_1841_upstream	20	9	34	29	8	19	15	26	15	24
CTATCAAGAGAAGTTG	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
TAATCATAGGGGTTCT	ref_1841_upstream	49	21	39	40	16	36	22	31	34	42
CTTTTTTATGGTTACA	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
ACAAAACCCACGGGGC	ref_1841_upstream	19	8	26	16	4	14	9	10	20	14
CTTTCTCTGATATAGT	ref_1841_upstream	6	8	4	11	1	9	5	5	6	9
TGGGACTCATTAACAC	ref_1841_upstream	18	6	10	14	7	17	7	17	2	11
GGCGTGTACGGTATTT	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTAGCTTAATCCA	ref_1841_upstream	13	7	8	12	8	13	13	10	9	22
GTGTGCAATTAACAAG	ref_1841_upstream	21	11	25	13	13	15	16	15	18	21
CCCCATTACTCGATAT	ref_1841_upstream	17	19	20	13	13	14	29	13	23	17
CTTCCGAGTGCTGAGT	ref_1841_upstream	73	56	79	75	36	70	34	64	44	64
CGTTCTTGCCGGCTGC	ref_1841_upstream	28	26	40	29	19	37	23	33	31	27
CCTCATGAATCATGCG	ref_1841_upstream	81	58	94	89	40	91	52	85	60	84
GACATTGCTGTTGGGC	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGGGGCGTTGGAC	ref_1841_upstream	24	21	31	28	19	26	15	22	13	21
AAGCAACTCCCCTCCA	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGAGTGCCCGAGA	ref_1841_upstream	57	39	65	69	35	62	55	51	27	45
TCACGTATGTATTCGT	ref_1841_upstream	16	3	16	13	1	19	12	15	12	13
TATACATAATTATCTA	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
GGACTTCTGCTGAGTT	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
TAGGGATACCTGTTTT	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCGATTTCAAGAA	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCCGGCTTTTTAT	ref_1841_upstream	69	40	95	71	58	78	35	65	48	53
GTATCGCTTAAACAGA	ref_1841_upstream	55	50	81	66	48	63	47	56	39	52
GCCTACGCGGTCTTAA	ref_1841_upstream	64	45	73	67	50	56	55	54	45	57
TAAGTGAGCGGCTGGA	ref_1841_upstream	392	227	479	420	244	432	221	384	271	374
TTAAAGTGTCTATTTA	ref_1841_upstream	66	37	84	67	44	64	41	69	46	62
TTGCTCGTAGTTGGAA	ref_1841_upstream	8	9	10	7	6	9	9	5	9	7
GGCCGGGCAAGCCTGT	ref_1841_upstream	44	26	28	20	37	33	39	22	34	21
TGTCAGCCGGTATCCC	ref_1841_upstream	25	49	53	37	33	32	36	34	57	38
GACCGGCATTTAGCAT	ref_1841_upstream	35	31	48	37	23	38	36	37	18	46
TCTCTCTCTTCCATGA	ref_1841_upstream	96	38	104	100	42	71	45	82	44	67
GTGGTTTTTGGTTATG	ref_1841_upstream	16	13	26	23	9	16	10	21	9	22
TTCGTTGATGGCGATT	ref_1841_upstream	17	8	23	21	9	20	13	18	17	10
TTGCTATGAGGGGCGG	ref_1841_upstream	6	7	13	12	3	6	7	10	8	8
AGTCACGCTCACGTTT	ref_1841_upstream	46	23	57	58	28	50	29	52	29	40
TAACTGAAGTGTTAGA	ref_1841_upstream	38	21	44	41	30	40	41	45	50	37
TAGGGGTTTTCCATCG	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGTAAATGCTTCG	ref_1841_upstream	16	10	15	22	7	17	10	26	14	17
CGTCCCATGTTTCAGC	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
ACTAACCATTGTGAAA	ref_1841_upstream	3	13	8	1	20	5	17	2	19	0
ACCAACTCAGTATCAC	ref_1841_upstream	33	20	30	35	26	30	19	26	31	24
CGGCCAATGGGCGGTA	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTTTCGGGGCCAA	ref_1841_upstream	21	16	23	14	19	13	17	19	21	13
GCGGTGAAAAACCTCT	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
TATTAGACTTTAAACT	ref_1841_upstream	88	62	134	88	50	82	76	78	61	91
TTCCGCCTGTCGCAGC	ref_1841_upstream	82	49	130	88	48	93	67	94	48	85
CTGACCTTTTACTTGC	ref_1841_upstream	31	14	31	34	14	26	26	25	27	27
GCGGCTCATAGCGTAC	ref_1841_upstream	48	22	60	28	18	31	30	39	24	32
CCGGCCTTACGTGTCA	ref_1841_upstream	10	14	8	3	16	2	22	4	19	3
CTTGGAGTGCCAGAGA	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTTTAGCACGGTA	ref_1841_upstream	53	31	78	50	44	54	43	71	27	61
CCTTAACGTGCCCTCT	ref_1841_upstream	17	31	16	12	43	13	38	15	42	7
GATAAGGTGTATACGC	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
ATAATTATGCGATGGA	ref_1841_upstream	5	3	2	3	0	6	2	4	5	1
GGGGGTGGTCGGTGCT	ref_1841_upstream	137	92	170	139	92	122	88	136	106	103
ACCGAATCTTTTGTTT	ref_1841_upstream	46	28	46	37	41	37	19	35	30	47
TCCTTCGCTCACATTA	ref_1841_upstream	4	1	3	4	1	5	2	6	4	2
CATTTCGATCCGTTCT	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
TTCATGAAAGGACTGT	ref_1841_upstream	54	40	69	69	32	59	25	47	29	46
GTCCAGCTGTTCTACA	ref_1841_upstream	0	1	0	0	0	0	0	1	0	0
CCCTAGAGTGCCTTCG	ref_1841_upstream	53	37	60	57	41	43	37	50	43	50
TATGTTTCTACGCTTA	ref_1841_upstream	50	18	45	43	22	45	26	54	23	55
TCGGAGCAATTACCGT	ref_1841_upstream	11	11	25	26	11	31	20	37	11	18
ATCCTCAAATTTACTC	ref_1841_upstream	235	144	302	224	174	232	143	231	135	227
GCGCGTGACGTACCTC	ref_1841_upstream	51	41	71	38	25	68	35	58	31	37
ATTCGGAAACTTCGCG	ref_1841_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTGAGCGCCAACC	ref_1841_upstream	38	18	54	35	20	36	25	29	23	30
TAGAATTGATACAACC	ref_1841_upstream	40	27	51	43	23	31	21	41	30	39
CAAGCGCGTCACGTTT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGTTCTATCCGTA	ref_1338_reverse	77	114	103	73	105	84	104	86	128	58
GGTCTGCTAAGTCTTC	ref_1338_reverse	30	40	35	31	48	42	51	38	38	32
CACGGATACCGGTAAA	ref_1338_reverse	29	33	29	36	54	19	49	27	46	27
TGTGATAGTTTTCTAG	ref_1338_reverse	45	26	62	31	31	41	39	29	38	37
GCCTCAGTGCCCTCCC	ref_1338_reverse	43	87	50	49	82	47	79	41	90	40
ATCGAGTGCTCGGTTT	ref_1338_reverse	80	88	83	96	101	76	97	57	114	71
AGAGGTTACAAAACGT	ref_1338_reverse	61	85	91	71	72	82	72	70	93	56
TGCGTACCTCCGTTTA	ref_1338_reverse	28	36	26	25	36	17	26	15	40	16
TTCTTGAGACCTTCGT	ref_1338_reverse	43	47	38	47	40	34	60	31	59	28
GCAAACTAACTATTAG	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCCAAAGTCTCTC	ref_1338_reverse	42	86	68	54	78	65	89	51	83	57
CCGTCGAGTAGGCAAA	ref_1338_reverse	22	83	20	20	46	16	45	6	52	24
ACGCCATTAGGTCCTT	ref_1338_reverse	20	30	14	17	18	26	11	26	23	17
CTGACGCGATCCAGTC	ref_1338_reverse	19	18	22	18	12	18	17	15	21	28
TCGAACCTGGTTATAG	alt_1338_reverse	21	29	40	19	40	22	21	25	29	17
TCCGGAAATCACGGTG	ref_1338_reverse	12	12	6	9	10	14	17	19	17	13
CGTATCTTGTTTATTC	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
GACCTCTGAAAACGGG	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGGCGGCCCTAGC	ref_1338_reverse	23	32	33	20	45	28	39	24	47	16
TGTGGGGGGGCGTCGT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTTGATGGAAGAT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
AACTTGCTGCATCATT	ref_1338_reverse	6	10	12	10	16	12	15	11	9	9
TTACTGTTCCTTGATT	ref_1338_reverse	45	49	36	37	72	40	50	30	40	36
AGTTTTGTTATGCCGG	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCCCATTTCAAAC	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
ACCAATGTATACTTCT	ref_1338_reverse	8	9	14	9	17	12	7	5	17	12
CTCAGTATCGGTCCGT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CATGCGATGAGCATTG	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGTGGGTTTAATT	ref_1338_reverse	11	8	3	9	10	7	10	5	11	10
AAAACGCTCTCGGGCA	ref_1338_reverse	0	0	0	0	0	0	2	0	0	0
TCTGGATTAATTGGAT	ref_1338_reverse	19	52	30	24	24	31	34	20	51	25
GACGCTGGCTTGCTAC	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
TTAACGGACCCCCAAA	ref_1338_reverse	7	17	16	9	19	8	8	12	17	9
GTTCCCTGAATGTTTA	ref_1338_reverse	61	67	62	41	91	55	56	54	81	51
CACGACTCGAATGTCG	ref_1338_reverse	11	9	8	15	10	7	10	5	7	5
TGGTGGGTGATTAATC	ref_1338_reverse	16	24	13	20	27	17	26	21	26	27
TGCGCTGGGACCTGTA	ref_1338_reverse	42	89	63	67	108	58	87	47	108	49
CGTGAGGTACGTTCTA	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTTAGGGGCTGCA	ref_1338_reverse	15	17	21	13	16	15	16	10	20	10
TTGTCTCGACTGATAT	ref_1338_reverse	0	1	2	2	4	2	3	1	2	2
GTTATCACCTGTGCTA	alt_1338_reverse	152	282	194	159	279	161	295	135	261	146
AAGATCATCTTTTGAC	ref_1338_reverse	18	27	13	12	26	15	24	15	30	14
TTCATTCGGTTGTATT	ref_1338_reverse	12	13	6	21	17	15	6	7	17	9
GTGGTCATGTGTATTT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGTTACATTGCTA	ref_1338_reverse	14	21	12	6	19	7	13	8	16	7
CTTGGACCTTGTTAAC	ref_1338_reverse	315	475	346	326	508	281	517	241	547	248
AACGTTGCCTATCGAC	ref_1338_reverse	12	34	12	18	23	18	36	13	38	17
GGGATTCAGTGGTGAG	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGGTCCGTACGTA	alt_1338_reverse	14	11	15	12	22	8	17	11	29	11
TTTCTCTCAGGTCGTG	ref_1338_reverse	27	38	38	39	32	28	47	28	42	28
AGTATATTTCATTTAT	ref_1338_reverse	9	8	12	7	11	11	8	9	6	5
CCCAAAAGAGAGTTAG	ref_1338_reverse	57	100	75	77	113	52	122	58	99	65
ATATTGGTTTCGGACA	ref_1338_reverse	31	36	37	22	33	28	38	35	46	35
TTCTACTCGATGAGTT	ref_1338_reverse	46	80	64	54	59	50	65	54	73	54
GAACCTTGTTCACTAT	ref_1338_reverse	10	13	20	7	8	16	14	8	15	12
TTGTCGCTGTTGTGCC	ref_1338_reverse	2	0	0	0	3	0	0	0	2	0
TTGATCTGTTTGTATG	ref_1338_reverse	12	14	13	16	27	10	15	7	20	6
AAATTTCTTGAATATA	ref_1338_reverse	13	20	10	13	16	20	22	18	27	10
ATAACTTCTGGTTTCG	ref_1338_reverse	74	93	80	77	72	64	116	45	99	61
AAGATGCCGCCGCTTG	alt_1338_reverse	154	123	183	149	145	167	174	132	148	111
GCGTGTACTCTTGCGG	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CCAATTACAGTTAATG	ref_1338_reverse	21	30	14	17	26	14	24	12	27	12
AAGGTATAGAACTGCT	ref_1338_reverse	4	11	3	8	8	6	23	4	11	5
GGGGCTTGAGGTACCT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTTTCTTTGTTGA	ref_1338_reverse	125	127	105	88	116	99	129	93	133	96
CAGCCTGGCTTCCGGT	ref_1338_reverse	5	22	3	12	10	4	17	4	15	2
ATATTTATGTCCGTTC	ref_1338_reverse	26	23	30	27	30	27	23	21	30	15
ACCGCGTTTCATTATT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
AGACATAAACGTGGAG	ref_1338_reverse	28	21	20	18	15	19	18	12	30	14
CGATAATCGCGTACAG	ref_1338_reverse	128	157	124	113	217	126	204	120	172	114
TACCGATTGGCTGTCC	ref_1338_reverse	28	44	29	22	38	31	35	27	42	39
TCTGTTACGTTTTATT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CAAGACCAAATTGAGC	ref_1338_reverse	130	152	126	127	163	107	178	114	167	104
TGACGCGGGTGTTTTG	alt_1338_reverse	178	224	206	189	274	162	240	161	243	171
AAGTGCGGCAGGTAAT	ref_1338_reverse	60	54	41	40	62	40	56	40	71	41
TCCCGCTAGTGGCTGT	ref_1338_reverse	13	23	17	14	24	11	17	11	34	20
TCTTTTTTTCAAAAGT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGAGTAGAATGCC	alt_1338_reverse	57	66	74	63	85	53	86	68	90	71
TGGGAATCTCGAATTT	ref_1338_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGGTAGGGTCGTT	ref_1338_reverse	37	57	55	40	41	29	57	39	48	33
CCGATTTTTGTTCGCC	ref_1338_reverse	13	12	18	23	16	11	17	12	21	10
GTGCCGTCGGGGTCAA	ref_1338_reverse	18	24	33	12	39	23	30	27	35	25
AGTACAGCCTTTTGGA	ref_1338_reverse	37	53	40	38	34	28	51	35	45	42
CTCGTATACATCGATG	ref_1338_reverse	14	14	11	17	21	9	10	13	21	10
CAGTCTGCGGGTTATC	ref_1338_reverse	40	43	29	28	35	19	41	18	30	22
CAGTCCACACTACTTG	ref_1338_reverse	3	8	5	3	2	5	5	3	3	5
TTCTCCGCAGATACAG	ref_1338_reverse	2	3	4	4	1	4	4	1	1	4
TTCTTGGGAGGTTCGG	ref_1338_reverse	16	20	20	24	41	15	29	16	25	15
ACTGAACGTGCCGAGT	ref_1338_reverse	11	17	8	14	6	4	7	4	14	5
GATCTGTAGCTGTTAA	ref_1338_reverse	4	4	6	1	9	5	5	3	5	4
ATTAGCGCAATCACGT	alt_4000_RC	34	25	57	33	41	36	32	26	37	37
TATTGTGGTCTTACTA	alt_4000_RC	33	60	39	40	70	37	63	37	74	39
CTACTGCTGGAGTTAT	alt_4000_RC	48	68	49	41	65	34	62	36	72	36
GTATAACCGTCTCAGT	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
GCGATGACCCAGAATT	alt_4000_RC	52	77	57	74	65	57	80	36	81	51
TTGCTTTTTACGACAC	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
GCCGCTCCCTCCCACG	alt_4000_RC	3	4	9	4	12	2	10	5	8	4
TCTAATTTCATCGGGG	alt_4000_RC	60	80	73	56	82	69	60	60	78	42
CCAAATGCCCTGAGGC	alt_4000_RC	20	22	27	41	20	26	22	25	24	16
GCACCGCGTGGGTATC	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
CCGTCGTCCTAGTGTT	alt_4000_RC	12	32	7	13	14	18	36	8	37	14
AGCCTGTTAATCTAAG	alt_4000_RC	3	12	15	6	8	10	11	10	6	8
ATGAATAATCCGCCGG	alt_4000_RC	22	26	22	26	23	15	28	17	24	18
CAATTGCGCAATGCCA	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
CTGGCAAAGTTGTTGG	alt_4000_RC	134	182	183	180	187	156	153	150	183	118
TTGTGCGGGGAGCCTG	alt_4000_RC	49	58	46	33	56	38	55	36	61	37
GCTTCAGCCTCAAATT	alt_4000_RC	9	9	4	11	5	5	13	5	11	8
GCCATGCAGGGTCGCA	alt_4000_RC	139	199	171	144	203	130	221	119	210	99
AGTAATAAATCCCACT	alt_4000_RC	35	32	28	25	25	18	39	23	24	24
GAATTTTGCATGGTTA	alt_4000_RC	14	40	28	29	29	34	42	31	33	17
TTGATATAGAGTTTCT	alt_4000_RC	22	22	26	15	26	18	33	23	30	15
CAGCAAGCGCCCTTGG	alt_4000_RC	75	116	121	103	110	96	139	107	134	76
TCACACTCGATAAAAT	alt_4000_RC	51	64	49	40	70	47	54	48	59	40
TATAGTACTACATGTT	alt_4000_RC	78	90	90	82	101	79	112	69	112	71
CATTGGTTATGCCTCA	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
TCGGCACTTAGTGCTC	alt_4000_RC	21	16	22	14	16	22	29	17	28	15
CTTTAGCGAGTGTTTT	ref_4000_RC	7	22	9	18	24	7	13	10	12	11
TGGTGCCTGTTTCTAC	alt_4000_RC	87	116	89	83	115	62	127	90	129	72
TAATGAGCGCCATTGA	alt_4000_RC	103	123	117	125	112	114	116	101	134	99
ACGTTTGCGAACTTTG	alt_4000_RC	46	56	50	43	66	43	69	47	74	31
CGCGGTTCGATGCATC	alt_4000_RC	101	207	138	145	197	137	234	122	189	99
ATGGCGAGATCCAGCA	alt_4000_RC	26	25	37	26	31	14	29	24	25	21
TTATCTACTGCCTTGC	alt_4000_RC	10	23	10	8	15	5	10	9	18	9
TTAATGTTCCACATCC	alt_4000_RC	17	31	19	14	29	19	29	15	41	17
AATATTTACATCCCAT	alt_4000_RC	2	0	0	2	3	0	0	1	3	2
CAAGCAGCTTGGACAT	alt_4000_RC	8	12	12	8	10	8	10	9	15	9
GGCTTACTTCTGCTAA	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
CGGTATTCTACTCGTA	alt_4000_RC	44	59	34	46	55	34	66	46	77	32
CAGTTTGACCCTGTTC	alt_4000_RC	30	41	31	31	30	33	37	31	41	32
AACTCTAAGTTCTGTT	alt_4000_RC	27	45	39	16	53	20	54	23	53	26
CTGGTTTCGAAATTAG	alt_4000_RC	19	22	17	15	25	9	22	14	24	9
CTCACCGGTCTTAGCC	alt_4000_RC	26	22	32	20	32	18	23	25	27	4
CGCCGCCTTGGAGTGG	alt_4000_RC	30	41	27	15	42	37	47	22	54	24
AAGTTTATGCAGGTCC	alt_4000_RC	15	27	16	10	21	17	29	16	17	14
GCCCGACCTTTTCATA	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
GTACCTCTTTGCCTGC	alt_4000_RC	50	57	54	46	69	46	82	45	74	43
TATTAGCCGGTCCTCC	alt_4000_RC	55	100	119	82	93	69	107	98	119	70
TTCCTATTTAGGCCTG	alt_4000_RC	31	41	40	25	44	26	56	34	45	27
AGTACAAGGGCATGTG	alt_4000_RC	10	23	11	7	16	9	15	13	17	13
GGTTTTTTAATCATGG	alt_4000_RC	0	1	3	1	2	2	2	1	1	2
CCGTCCTTCTGCTGAC	alt_4000_RC	12	46	19	17	27	21	26	10	28	8
TGGACATCACCTGGCG	alt_4000_RC	10	15	11	11	24	11	16	9	17	12
TTGCTTGAAGGGGAAG	alt_4000_RC	5	9	8	7	8	5	11	6	9	3
CCCATCAGGTTCCAGA	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
TTCCTAGACTTAGTTG	ref_4000_RC	106	150	143	101	167	108	168	109	163	87
GCAGCATATATCCTGG	alt_4000_RC	24	41	45	29	37	20	33	28	36	38
GGAGTTCGGTCGTAAT	alt_4000_RC	42	58	55	61	55	44	54	48	49	43
GCTAATGCCAGGAATT	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
GGGAGTGTAAGTGTAT	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
AGTTATTAGTGGTCCA	alt_4000_RC	12	19	17	5	31	12	23	9	30	14
GGGGGTCAACACCGCA	alt_4000_RC	8	27	9	14	19	7	15	10	11	7
TTGCTTTTTCCGACAC	alt_4000_RC	86	122	103	85	158	87	135	100	129	101
GCTCCGGTGAAACGGC	alt_4000_RC	11	38	23	26	41	17	46	19	47	12
GGTTAGTTAATGCTAG	alt_4000_RC	0	0	0	0	0	0	0	0	0	0
AGGGTTGTATCGCAGG	alt_4000_RC	74	87	80	69	86	64	113	84	89	64
GCTCCCAAAGGGCCCG	alt_3968_fdr	8	1	10	12	7	8	14	8	10	9
AACTTCTATACAAGTA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTATGCGAGCTCG	alt_3968_fdr	212	338	314	254	349	228	341	257	391	238
TGCTCTCTGCTGTATT	alt_3968_fdr	69	101	95	89	93	81	93	66	100	71
CGCTTTGTAACTCTAG	alt_3968_fdr	8	37	18	17	33	19	23	17	24	9
TCCTTGGGAAATAGCC	alt_3968_fdr	19	30	29	26	34	17	29	31	35	26
GGGGTCCGAAGATGTG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGCAAGACCTTAA	alt_3968_fdr	14	19	27	22	27	23	17	17	20	31
CCTTAACTCAGGCGGT	alt_3968_fdr	8	5	7	11	8	8	13	8	11	14
CGTCCACGTTTCCGCT	alt_3968_fdr	9	23	14	11	13	11	10	5	21	9
GGTGTGATTGTGCTGA	alt_3968_fdr	50	84	81	65	89	49	95	47	67	46
GGATTTTTCCGTGGAG	alt_3968_fdr	161	180	192	181	205	151	186	138	181	143
TAACACGCATTGGATG	alt_3968_fdr	4	11	7	8	5	11	7	7	4	15
TGTGCCGTGTTTTGTG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCTTCGCATTATG	alt_3968_fdr	15	24	23	16	14	13	30	23	30	16
GTTCCTGTGCAACTTG	alt_3968_fdr	29	27	45	25	26	21	23	21	30	20
GGTCTGGATCGTGGGG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
AATACTTTGGCGCCTG	alt_3968_fdr	14	11	13	11	23	20	8	13	12	15
GGTCGTTCATCACGTG	alt_3968_fdr	2	3	2	2	0	1	2	2	0	0
ACTAGCACACGTTCAG	alt_3968_fdr	0	2	2	3	4	3	6	2	3	2
CCGCAAGGAAGAAGGG	alt_3968_fdr	4	4	7	3	0	2	7	6	5	1
CATCGTTGTAATATTC	alt_3968_fdr	68	63	67	75	88	69	74	78	93	75
TTCTCTATTCCATTGG	alt_3968_fdr	18	28	27	25	41	12	28	27	34	19
ATAGACCCTAATTGAA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTTTGCCCTTGAT	alt_3968_fdr	54	60	65	62	67	38	53	55	70	59
TATCTGATCAATTTAG	alt_3968_fdr	74	95	106	66	68	85	106	71	85	75
CCTATCCATTCCGCTG	alt_3968_fdr	20	27	21	22	29	14	40	24	30	30
GGGGAGAGTAGCTACC	alt_3968_fdr	26	21	29	23	23	23	31	15	17	15
AATAACGACAGTTATA	alt_3968_fdr	13	5	5	6	10	6	7	7	9	7
TTACCGATAGCCCTTC	alt_3968_fdr	6	9	10	7	20	6	21	10	18	9
CGACCCAATAAGCTAC	alt_3968_fdr	88	54	85	80	76	65	91	73	101	50
TATTGGCTGCTAAATT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CGATGCCTAAAGTCTT	alt_3968_fdr	39	44	35	24	40	26	45	27	49	30
GTTTGCATTTAAGATG	alt_3968_fdr	1	1	9	5	7	5	2	3	2	1
TGGAAAAATGTCCGTA	alt_3968_fdr	29	25	37	34	36	39	28	34	47	31
TCTGCTCATGCCACCC	alt_3968_fdr	16	24	27	34	24	14	22	11	30	14
GAGGCGTGCTCACCCT	alt_3968_fdr	30	44	31	32	45	23	46	29	38	28
GCTGTAAATGGGTCCG	alt_3968_fdr	29	36	43	48	44	38	62	30	43	26
CGAATACAGGTCGCGT	alt_3968_fdr	69	89	59	79	87	63	94	57	96	57
CACTATACGATTTTAA	alt_3968_fdr	38	43	38	50	44	30	32	38	48	23
TCGATGTATGGAAGTT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGCATCCCTTTAG	alt_3968_fdr	12	17	21	11	26	20	20	17	21	18
ATGGTGGCCGGTAACT	alt_3968_fdr	48	50	55	55	44	50	49	28	52	32
CGGTTGACACTTCAGC	alt_3968_fdr	1	20	10	6	32	9	26	6	30	3
GCATTTCCTTGGTTAT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GTTCACGTGTCTCATG	alt_3968_fdr	40	42	35	43	60	28	39	35	44	28
GGAAATTTGTCGCACA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CCTATTGGCTCCCATT	alt_3968_fdr	6	13	13	11	14	9	15	11	10	5
TTCGATTCGTCCCCCC	alt_3968_fdr	29	28	22	19	26	18	31	24	21	22
GGGATGCGTTCCACGC	alt_3968_fdr	43	25	44	16	31	26	35	27	34	23
GTTGGACAATGCATCG	alt_3968_fdr	56	73	81	64	63	53	50	59	70	53
CAGTGGTTACCCCAGT	alt_3968_fdr	45	38	56	53	54	42	49	50	43	47
GCAGGATTCAAGCGGC	alt_3968_fdr	55	55	71	50	49	53	54	57	53	49
TAAACCTCAATTTCAT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CTCAACTTTGCTAAGT	alt_3968_fdr	10	23	16	16	29	13	31	13	23	13
CTGTCCTTTAAAAGAC	alt_3968_fdr	56	59	69	46	67	56	68	51	67	44
CGTTCAACGGCTACCA	alt_3968_fdr	276	419	349	332	387	268	407	244	450	265
TCCCGTACATTCGAAG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GACCTGGTAGGGTCTC	alt_3968_fdr	62	61	70	62	76	48	83	46	73	38
CTCCACCGACCGTATT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGCCTCTCGTGG	alt_3968_fdr	2	2	0	0	0	0	5	2	2	3
ACCTCCACTATCCTCT	alt_3968_fdr	9	17	19	8	10	5	12	2	14	5
CCCGGGCAGTGCGCTT	alt_3968_fdr	25	84	49	42	84	24	96	30	105	33
ATAAAAGCAGACTGCG	alt_3968_fdr	11	18	18	16	23	12	14	16	11	11
TCTTTACGTCTCCTCG	alt_3968_fdr	31	31	24	38	14	19	23	15	24	16
ATAGTTGCGCCTGGCC	alt_3968_fdr	5	5	10	5	2	3	4	2	5	3
TCCATAGGACGAATAG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
AACCGTATTGAAGCCT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTTGAACACCGC	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GGTATTTGAATGTCTC	alt_3968_fdr	77	96	84	85	86	82	88	100	81	76
TGGCTCCGAGTGTTTG	alt_3968_fdr	18	20	23	20	26	24	29	14	19	9
CAGCAAAGCGTTGCAG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
ACAAAGAGCTTAGCAT	alt_3968_fdr	45	57	68	61	53	39	64	38	60	49
TCAAGGTCGCAATCCT	alt_3968_fdr	65	70	66	62	58	54	51	56	60	51
ATTTGAGGACTCGTGA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
ACCACACGTCACATAA	alt_3968_fdr	27	71	51	28	52	36	45	23	55	23
CCTCTTCAGATGCGCG	alt_3968_fdr	51	97	45	57	74	45	93	33	88	34
CAATATGAAGAATCTG	alt_3968_fdr	70	61	72	89	85	68	79	69	84	48
TTTGTATCTTGTTAAC	alt_3968_fdr	43	35	36	21	25	31	35	17	34	24
CTGAGGAGATGGCACG	alt_3968_fdr	39	47	45	48	36	41	47	49	39	27
ATATTAGGGCATGCAT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCCTGTCAGGGGG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
AATACGATGGGTACGA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTAAGTATTACGA	alt_3968_fdr	29	38	36	15	17	24	14	15	26	18
GAAATTAATAAAGTTT	alt_3968_fdr	19	12	14	22	24	29	21	20	26	19
GCGATGTTTTCACAAA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCTTCGCCCTCA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CATGGGTGCCTTTTGC	alt_3968_fdr	4	8	6	6	9	4	11	13	8	9
ATCATTACAGTGTTTA	alt_3968_fdr	32	33	39	31	34	25	46	26	34	26
CTGGTTCTCACTGTAT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGTTTGACAATA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CACTTCCAGTTGGAAC	alt_3968_fdr	17	15	6	10	16	7	11	7	19	7
GGGCGCGCTGCCTCTT	alt_3968_fdr	46	47	61	41	51	49	45	38	80	61
ACTTATGGCCTGCAGT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CTGAATCTTGCCCGGG	alt_3968_fdr	43	45	53	63	58	40	45	55	54	61
GCATATATTGATTGGT	alt_3968_fdr	91	108	103	105	113	91	121	86	131	80
AGGGAAAAACGCTCTC	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GGCTAAGAGCCGCCAG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCATTGAGTATTG	alt_3968_fdr	0	1	0	1	1	0	0	0	1	0
GCATTTTAAAGGAATG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCTGGGGATGTCG	alt_3968_fdr	5	3	3	3	4	2	3	1	2	3
TGGGTCGAACTGCAAT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTTTGTGGAGATA	alt_3968_fdr	28	33	29	22	43	39	39	19	35	25
ACCTTTCGTAGTGCTC	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTGCCCTTTTTGA	alt_3968_fdr	9	23	14	9	10	16	8	11	12	17
AGCCAATCCTACTCTT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
AGGATTTCTAGTAGTT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGACGTGCTAGA	alt_3968_fdr	6	9	6	3	5	2	4	3	2	3
CATTGTCATGCCGCGG	alt_3968_fdr	10	26	23	28	28	19	30	21	37	14
TCAGTGAAGATCTCTA	alt_3968_fdr	13	24	19	16	20	12	17	17	21	14
CTCCCGTGTGGTATGA	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCCCTTTTTTGGA	alt_3968_fdr	39	22	34	35	53	39	44	30	36	24
TTATTATGTTCTAGTT	alt_3968_fdr	56	51	54	48	43	52	55	35	53	39
GTGTTTCTAGTTTCAG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCAATTGTTGGTGCCC	alt_3968_fdr	11	14	15	5	19	15	25	12	15	12
CACTTTTTCTAATGCG	alt_3968_fdr	75	78	78	76	84	58	79	51	111	45
CCTTTTCTGTATCTGT	alt_3968_fdr	13	19	23	15	14	9	17	8	19	10
CGCCTCTCGCCTCTCT	alt_3968_fdr	24	44	36	29	38	19	30	32	30	22
CTATGTCTACAAAGAG	alt_3968_fdr	6	11	12	9	7	10	17	6	18	3
CGTCCTATTTTACTTA	alt_3968_fdr	13	85	13	9	82	13	75	12	89	5
ATATTCTTCGCTGTTG	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTTTCCCTGTCGC	alt_3968_fdr	9	7	9	9	6	8	6	15	8	7
CTCCATGGGACTCTCA	alt_3968_fdr	6	4	3	3	5	4	5	5	6	4
ACCGTAGGTCCAGCGT	alt_3968_fdr	0	0	0	0	0	0	0	0	0	0
TATCCGTTCCTCAGTT	alt_3968_fdr	33	34	40	39	35	35	40	24	32	22
GCATTTCTACCTCTTT	alt_3968_fdr	27	31	41	33	41	21	30	37	31	25
TTTAATTCGATCACTC	ref_5777_new	16	11	14	17	13	13	18	22	17	17
GTCATAGGTCTGCACT	ref_5777_new	19	17	13	17	24	17	29	13	25	14
GGTAGGTCGTAGGGCT	ref_5777_new	11	6	12	7	9	14	16	10	16	11
CTCGTACGGGTTAGAC	alt_5777_new	83	104	86	71	89	72	124	65	121	62
GCTACCTATTTCACTC	ref_5777_new	14	29	19	16	29	24	36	37	41	14
CCACCGAGTTATCTGC	ref_5777_new	0	1	4	2	2	3	3	2	2	2
CAGTGTACTCATTATG	ref_5777_new	16	35	32	15	32	37	25	30	25	24
ATATTACTGAGATTTA	ref_5777_new	12	5	9	10	11	11	11	6	9	11
CAACTATCCGAGTTTT	ref_5777_new	7	6	12	8	5	5	6	6	14	5
CAAAAACGGTACAGGG	ref_5777_new	25	43	30	26	36	31	41	32	32	26
ACATCGTACTATTCTC	ref_5777_new	0	0	1	0	3	0	0	0	0	0
CTATATTTGTATCTTG	ref_5777_new	47	39	60	48	43	45	42	33	59	43
CCCCCTGCATTGTTTA	ref_5777_new	0	0	0	0	0	0	0	0	0	0
TCACTCCGCCGTTATT	ref_5777_new	10	9	12	5	7	6	8	4	8	3
CTCTTGTGGGTGTTAA	ref_5777_new	36	31	38	36	33	31	39	29	30	30
CAATAATCGGCCTGGG	ref_5777_new	40	39	46	35	30	46	45	30	36	29
GTTCGAATCGCGCCAC	ref_5777_new	81	88	95	74	102	73	58	56	84	69
GATCCCGTGATTGCCA	ref_5777_new	13	20	8	10	21	11	17	15	12	14
ACAGCATTCGTGAAGG	ref_5777_new	0	1	0	0	0	0	0	1	0	0
CGAGGCTGGTTCTTAC	ref_5777_new	0	0	0	0	0	0	0	0	0	0
TATTATCGGTTACTGA	ref_5777_new	28	19	26	20	27	19	15	10	27	19
ATGACAACAATGTGCG	ref_5777_new	163	192	198	171	134	159	184	145	177	168
CTATCAAGTCCCATAT	ref_5777_new	18	31	35	24	37	20	32	26	32	29
GCGGTTTCAATACCAT	ref_5777_new	223	209	272	196	208	186	205	197	232	181
GACTTTCCGGGGTAGC	ref_5777_new	327	298	408	317	297	323	311	317	319	291
TCTATCGCGCTGTGCC	ref_5777_new	26	34	39	34	41	26	40	40	37	18
TTTTACTCCTTGATTA	ref_5777_new	0	0	0	0	0	0	0	0	0	0
TGTTAATGAGACGGCA	ref_5777_new	62	83	96	76	62	60	77	58	71	87
TGCACAAGCTATATTT	ref_5777_new	0	0	0	0	0	0	0	0	0	0
TTGTATCCTACGAAAA	ref_5777_new	37	44	50	36	51	32	39	33	46	42
ACAGCTTTCTTGAAGG	ref_5777_new	0	0	0	0	0	0	0	0	0	0
CGATCACCCGATAGTA	ref_5777_new	6	11	10	8	17	9	11	7	12	5
GTCTCCAATCAGCCCT	ref_5777_new	7	8	10	6	15	6	7	2	5	7
GGTATTCCTGTTGTTA	ref_5777_new	0	0	0	0	0	0	0	0	0	0
ACAGCTATCGTGAAGG	ref_5777_new	0	0	0	0	0	0	0	0	0	0
CTTTGCCTCACTCCCC	ref_5777_new	0	0	0	0	0	0	0	0	0	0
TGAAGTTTTGGGGCGG	ref_5777_new	0	0	0	0	0	0	0	0	0	0
TGCCGGTAATGTAAGT	ref_5777_new	19	14	25	11	12	15	23	12	23	21
ACTCCGACCAAATGTT	ref_5777_new	0	0	0	0	0	0	0	0	0	0
TAAGGTAAAAGTTTAT	ref_5777_new	41	57	42	33	51	38	57	38	70	46
CTCAATCATTAACGTT	ref_5777_new	4	5	15	7	9	7	10	3	12	5
CAGGCGCCGCATGACG	ref_5777_new	5	6	3	3	3	2	0	2	0	3
TCAATAGCTGGTATAC	ref_5777_new	61	35	57	32	56	43	49	39	70	38
GCTCGCGGTGCGATTC	ref_5777_new	19	18	18	12	15	19	17	9	15	17
TGGACGTGTGCTTGAC	ref_5777_new	86	105	102	86	77	77	79	98	100	77
TGTCTTGTTTTGTTAG	ref_5777_new	2	1	3	3	1	1	0	1	4	1
ATGCACTGTTTTTGCA	ref_5777_new	96	117	127	82	117	106	96	107	149	93
GCTGTTGTCGCTCATG	ref_5777_new	9	20	13	6	15	13	4	11	7	11
AAAAAGCTCTTATTGC	ref_5777_new	0	0	0	0	1	0	0	1	0	0
AGCATCCAGCTAAAAA	ref_5777_new	3	8	5	9	10	3	7	4	11	2
CGGGTCAATCACCCGG	ref_5777_new	147	141	173	141	153	138	148	128	155	149
CTGACCAAGTCTTAGG	ref_5777_new	0	0	0	0	0	0	0	0	0	0
ATAGGCAACGAGTGTC	ref_5777_new	11	8	10	8	11	3	12	12	17	6
AGCCCTGGCAATGGCA	ref_5777_new	0	0	0	0	0	0	0	0	0	0
GGCACGTCCCATAGCA	ref_5777_new	8	18	11	11	19	9	12	4	10	13
GCGCCGTCATACTACT	ref_5777_new	1	1	3	4	2	2	7	3	5	0
CTTCATTCTTAATAAA	ref_5777_new	7	6	6	8	10	2	7	6	11	4
ACGCAAGATAGCAATT	ref_5777_new	35	47	35	20	51	52	40	33	40	29
TTCGCCGGCAATTACA	ref_5777_new	124	100	137	96	117	92	124	105	108	102
ACAGCTTTCGTGAAGG	ref_5777_new	1015	1013	1195	941	1031	949	1029	919	1079	849
CGTAACCCGGCTGTCA	ref_5777_new	57	66	45	49	46	45	63	44	55	40
AATGGGAACGAACCAG	ref_5777_new	25	44	41	42	49	32	44	32	53	27
AACCCACTGACTGGCT	ref_5777_new	0	0	0	0	0	0	0	0	0	0
AAGTTTGCTCAGATCT	ref_5777_new	5	5	16	9	11	12	7	13	15	12
TGCTCTGGGGTTTTGC	ref_5777_new	10	13	7	13	14	13	11	9	10	12
TTGAATACTTATACCG	ref_5777_new	33	33	37	13	24	22	34	14	38	35
TGTCCTGCCCGTTTGT	ref_5777_new	0	0	0	0	0	0	0	0	0	0
AACCTTCATTTATTCT	alt_5777_new	46	19	66	33	28	45	30	44	37	33
GACCCCTTTTTAGTTT	ref_5777_new	32	48	49	23	44	41	28	22	39	26
GTTTGGTTATTTAGTG	ref_5777_new	42	36	48	40	40	45	51	30	32	41
GCTACTGGCTTTTATC	alt_5775_new	27	16	33	29	17	21	13	23	26	19
GCTATAATTGGATCCG	alt_5775_new	5	3	10	6	0	8	5	9	1	2
AGGTCAAACAAAACGG	alt_5775_new	29	16	36	33	23	26	25	37	16	24
CTAGGCAATGAGTTCC	alt_5775_new	44	23	29	31	22	33	20	23	16	23
ACCACTTCTGTGTATA	alt_5775_new	73	85	106	75	72	64	70	85	81	95
CTTCGTTTACCTCGAT	alt_5775_new	15	5	23	18	10	6	3	7	11	12
TCCTCATTTATTTTTT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CCTTCATATGGTCACT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CATTGGAACTTGGGCC	alt_5775_new	2	0	1	6	1	1	1	0	1	0
AGTTCTTGTTGATATA	alt_5775_new	90	58	115	85	70	86	64	87	52	71
GTTTAGTGGTAGCGCG	alt_5775_new	43	55	70	63	54	56	43	38	53	41
CATCCCACATCCGTCT	alt_5775_new	32	24	26	23	30	17	28	34	25	18
TACTCACCTGTATCTT	alt_5775_new	4	24	6	6	11	1	18	5	17	1
GCCTGTCCTCCCTATG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TTTGGAGTACCCCGAT	alt_5775_new	4	6	9	17	8	16	7	10	9	11
AGGTTTCCATCAGAGC	alt_5775_new	10	4	8	8	9	10	11	15	7	9
TCGGCATCACGGAGTC	alt_5775_new	15	7	23	16	7	10	13	7	6	11
TGTTGCCTCCCGCAGA	alt_5775_new	55	44	74	65	57	56	44	55	50	47
TCGCGGCCCGCCTGAC	alt_5775_new	23	26	39	31	28	20	31	22	19	36
TAGGATCGTATTTATC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CAAGGACGTGCTGCGA	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TACTCGATGAGTCGCC	alt_5775_new	84	54	97	94	70	67	55	105	65	65
ACTATCTTAGTGCTGG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TGCGTTCACAGCTTTT	alt_5775_new	13	10	23	17	13	18	18	20	8	16
AGACAGGAACCCGTGT	alt_5775_new	135	115	188	162	104	162	99	121	137	136
AGCAGCTCAGTTCACG	alt_5775_new	2	1	5	4	6	7	5	3	5	4
CGTATGTGTGGCCTGG	alt_5775_new	87	66	107	124	61	104	79	97	88	91
ATATTGGAAGGATCTG	alt_5775_new	7	9	21	5	18	15	11	14	12	10
GGCATTTGTAAGAATG	alt_5775_new	73	61	86	95	59	82	43	67	61	76
TGTCATAAGCGCAGAG	alt_5775_new	39	22	57	36	36	40	22	39	24	33
CACATCCGGTAAAGTC	alt_5775_new	9	8	9	8	7	9	12	10	1	12
CTGAGAACCCTAGGAC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TATAATTATGACAGTT	alt_5775_new	19	19	38	28	27	30	32	22	19	26
GGTTCGTATATTGAGA	alt_5775_new	19	13	20	24	14	21	20	11	15	21
TCGTTTTCGGCTACTT	alt_5775_new	76	52	98	73	43	69	51	73	54	72
ATTGGACCGAACTACA	alt_5775_new	20	10	22	22	17	17	16	18	25	18
TGTGTTTGAGTGAAAC	alt_5775_new	155	155	190	196	176	208	147	157	164	187
CTATCGATGCGGTATG	alt_5775_new	8	9	12	5	13	3	4	13	3	11
GCTACTGTCCTAGATT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CCAGTGGACCTGATCT	alt_5775_new	69	46	72	87	53	62	51	42	65	44
CAACACTTCTTACCCA	alt_5775_new	9	7	9	18	12	6	11	9	15	13
TGAAGAGATGTTCGGT	alt_5775_new	21	14	34	35	12	32	22	33	19	37
CCAAAGGGATGTTGTC	alt_5775_new	63	54	98	66	48	86	65	50	64	51
AGTTTTGAGATCTCGC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TGCTTGCCCACAATCG	alt_5775_new	6	14	4	12	5	13	3	15	8	9
GGTTCGTAACGCTAAT	alt_5775_new	50	41	70	77	32	66	55	38	37	56
CAGGTGACCGTTCATT	alt_5775_new	13	10	16	12	11	11	9	11	16	9
GCTTTCCCATTCGACT	alt_5775_new	29	25	45	31	35	22	40	32	24	20
TCACGCGCACAATATT	alt_5775_new	8	13	26	7	22	11	12	13	13	19
GTCACATTCGCTAAGC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
AATGGTCATGATTCGC	alt_5775_new	40	38	58	61	27	56	39	64	35	45
CGTATGGCTCGCGTGG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TCCCGACGTGTTTTAT	alt_5775_new	47	37	46	50	54	52	54	28	46	50
TCACCCCTCGCTACCC	alt_5775_new	177	134	262	182	103	167	121	148	164	199
CCCGAATCAAAACTTT	alt_5775_new	14	9	13	23	12	23	16	14	13	12
TACCACTGGTTTGGGG	alt_5775_new	79	55	97	65	67	68	70	67	62	73
CACGTAAGACGTCGCG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
GTCTTTACGCGACCGC	alt_5775_new	12	6	22	13	17	14	10	12	17	16
GCTGAGTTTACTGTTT	alt_5775_new	90	77	100	107	84	92	94	94	63	89
CGATGGATGATATAAT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
GGTTTGGTCGGTGCGC	alt_5775_new	20	65	25	29	77	21	84	23	78	29
TCCATGTTCTGAGATA	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CTGCCTAAGCGTCTTC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TGGGCGGCGGAGCTTG	alt_5775_new	62	45	77	50	40	61	38	52	45	56
ACGGGTTTTGCTTAAG	alt_5775_new	7	6	11	12	4	7	3	10	8	2
CTTAGGTGAAGCTGCC	alt_5775_new	51	42	66	65	33	52	64	59	58	56
CATATCATTGCCTCGT	alt_5775_new	1	2	2	1	0	2	4	3	2	4
GTTGTAACAATTGCGA	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TCTCCCCGTTACGCGG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CACTGAACTTTGATGG	alt_5775_new	36	16	44	27	14	37	18	23	22	32
TCCGACATTTTCGAGT	alt_5775_new	68	42	71	65	42	58	45	63	46	63
GTAGTGCTTTCGCCAC	alt_5775_new	7	10	15	11	5	7	8	15	12	10
CTGTACGTAAGTTTTT	alt_5775_new	11	7	8	11	5	9	5	11	2	5
GTGAAGAGTCTTTAAT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
AATTACTATTTCGGTC	alt_5775_new	162	130	197	183	121	141	127	148	123	154
GGACCAGCATCGTTGT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
AGTTTTTTCTGATAGT	alt_5775_new	81	47	95	67	57	73	58	73	63	68
TCTTCGGTTCGTGTGC	alt_5775_new	30	48	66	48	71	40	75	54	55	29
GAGGCTCCAGTAACGC	alt_5775_new	22	12	27	25	14	14	9	20	18	32
CCGCGGCCGCACAATT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
AGCTCACCCGTGCTAG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
GACTGGTTAATTAGTG	alt_5775_new	7	9	11	7	7	6	3	8	6	8
ATCTGATAAGAATACC	alt_5775_new	19	14	20	20	7	20	12	17	19	17
CGGCCGAGTAATTGTT	alt_5775_new	45	32	53	45	29	42	21	39	31	40
GGTAAGCATTGGTTCT	alt_5775_new	35	11	27	39	22	15	9	33	20	29
GTCCATCAGTCAGTCG	alt_5775_new	60	41	71	59	48	51	39	63	29	47
GTGGACAACTCAGAGT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TCGGGCGCCTTTATAC	alt_5775_new	138	117	153	137	119	112	142	123	136	109
TATAAAAGGTTAATGA	alt_5775_new	12	16	22	12	5	9	7	11	7	16
CTGAGGCGCGTGGGTT	alt_5775_new	63	53	88	65	33	78	58	64	52	61
CCCCACCATCACGAGA	alt_5775_new	61	63	105	84	49	68	58	78	48	62
TCATTCTCGAGTATGG	alt_5775_new	18	18	30	26	15	31	21	25	18	20
AGGGCCGAGCCTTGTC	alt_5775_new	10	11	12	16	4	6	6	17	8	14
GAGCGTAGCTGCCCCG	alt_5775_new	12	6	12	8	13	9	9	11	5	9
GGGTGCCTTAAAAGTA	alt_5775_new	12	11	10	17	4	12	6	7	9	18
TTTGCTTTTACCCTGT	alt_5775_new	42	16	66	60	35	39	35	46	31	42
AAGTAAATTGACGTGG	alt_5775_new	1	2	9	1	1	1	2	5	3	2
AACAATTGTGCATTCG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTTTATGCGGC	alt_5775_new	87	81	119	108	51	94	76	66	78	78
TCCACCAGGCCCTACG	alt_5775_new	26	20	37	27	21	17	13	18	19	22
CCTTAGATAGATTGGA	alt_5775_new	48	52	44	45	68	29	62	45	55	48
GCGTGTATCAGTTCCT	alt_5775_new	9	5	19	5	8	6	6	9	5	10
CGGCAGTCTAGCGGGT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
GCAGCTTGATCGTGCA	alt_5775_new	20	18	34	29	11	24	19	15	21	26
ACGTCTTTACCCTTTT	alt_5775_new	64	46	66	81	53	65	47	50	49	52
CTCCCCCCTTCAAGCG	alt_5775_new	139	155	163	167	140	107	135	136	173	133
CGACCGGTTCTGAAAC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TCAGATATTTACCACC	alt_5775_new	24	15	23	20	15	15	19	16	14	20
TAGTAGCTACGTCCTT	alt_5775_new	12	9	12	16	17	9	8	12	17	13
TTCTAACGTGCTGTTA	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TTTTGCGTAGTCCTCA	alt_5775_new	52	23	44	40	28	52	29	42	28	39
TCGAGTCAAAGCTTAT	alt_5775_new	16	9	16	13	8	11	5	7	8	5
ATCAGGCCTTTTGCGA	alt_5775_new	91	85	105	103	84	103	90	97	97	96
TTACTGACTTCCTGTA	alt_5775_new	6	0	6	6	4	3	2	1	1	3
CTGCTTAAGGGCCCCC	alt_5775_new	53	31	55	46	34	45	26	58	36	43
TTGAGGTTTGCGAACT	alt_5775_new	0	0	0	0	0	0	0	0	0	0
GGTTCGAGTAGCCCGA	alt_5775_new	24	26	47	45	36	31	16	39	11	33
CAGACTTGCTTGGTGT	alt_5775_new	12	15	18	9	11	13	7	13	13	14
AGTCATTGCATATTTA	alt_5775_new	15	8	6	15	11	17	6	11	7	11
TCTATCTCCGCAGTCG	alt_5775_new	92	67	107	118	77	77	84	68	80	87
ATACTGTTCATTTGTC	alt_5775_new	49	28	49	37	17	38	24	36	33	33
AATGACAGTACCAGAT	alt_5775_new	15	11	5	8	2	17	4	10	10	11
TTTGGGTAGGCCATTG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
GTGAGCTTTTCCCTAT	alt_5775_new	80	52	88	64	61	83	43	75	60	63
TAGCGAATAATTCCGG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TGGCGAGTCTCATCGG	alt_5775_new	17	8	20	18	11	19	11	10	11	20
TTGAATTTTCTAAAAC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TAAAAGGGGACACGCG	alt_5775_new	163	100	192	186	121	160	91	157	125	143
GAGAGTTTTTCCACCG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CGCCAGACCGACCGGC	alt_5775_new	0	0	0	0	0	0	0	0	0	0
CCCGATCCGTAGCCGA	alt_5775_new	21	11	22	22	28	13	27	22	22	24
GCAGATGCTCCCTGGG	alt_5775_new	15	7	10	24	10	14	11	5	11	10
AACCGATCTAGAACAG	alt_5775_new	0	0	0	0	0	0	0	0	0	0
TACTTCAGTTGTTGCC	alt_1093_reverse	9	10	10	11	9	8	8	9	27	6
GTTATCTCTGTCGCCT	alt_1093_reverse	7	14	7	3	7	4	4	7	5	8
CAGCCAGGATTGCGCA	alt_1093_reverse	16	45	28	18	24	15	38	20	38	10
TAGATTCACATGAGAG	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGTTACAGGTCTA	alt_1093_reverse	7	12	15	10	17	12	21	11	22	10
TTGGCAAGGCTTAGTG	alt_1093_reverse	6	20	5	4	20	5	8	7	21	5
AGTCTAGGGATGTCGC	alt_1093_reverse	9	14	12	11	23	8	8	5	24	6
CTATAGTAGCGCGGTG	alt_1093_reverse	54	72	51	44	67	50	82	46	57	38
AAACAGAGTGATCAAT	alt_1093_reverse	19	37	29	21	47	21	49	29	57	32
AGTAGGTATACCTGTG	alt_1093_reverse	4	3	7	6	6	0	13	6	7	3
GTAGGAGGTTGCCCTG	alt_1093_reverse	47	99	71	66	107	41	127	50	106	56
TTGCAGGCCCGTTAAG	alt_1093_reverse	14	10	10	15	13	11	18	6	24	13
TGATGCAGTTCGTTAT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
ATCCACGGTTATCAGT	alt_1093_reverse	51	77	53	52	83	41	92	39	77	43
GGGGTCCAGAACCCTG	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCAACGAACCATG	alt_1093_reverse	8	13	9	11	22	8	13	13	10	7
GAGATTCGCAATTCCA	alt_1093_reverse	15	24	9	13	32	16	33	13	46	18
GGATTTTGTTTTTATA	alt_1093_reverse	115	182	137	105	157	119	171	113	181	112
CTCTGGGGCACCTCCC	alt_1093_reverse	3	11	9	7	7	10	20	7	12	4
CTATACACGAAAAACC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
GAACATGTCGTTTGTG	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
GACATCGGGCTCAATT	alt_1093_reverse	10	10	10	14	19	9	13	8	15	6
TGAGGCCGGAGCTTTC	alt_1093_reverse	24	30	34	32	42	34	49	28	53	28
CTCGGGTCGCTGGTGA	alt_1093_reverse	5	22	7	3	23	3	27	4	16	5
CCGGATAGATCTCTGC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CTACGACGGTGTCATT	alt_1093_reverse	6	24	3	6	9	6	17	5	12	9
AGAGATCAAACCGCAA	alt_1093_reverse	8	16	7	13	23	7	19	5	26	6
GCATGGCGCACTATGG	alt_1093_reverse	21	34	39	30	32	14	51	18	31	23
CCCAATCTGTAGGACT	alt_1093_reverse	19	24	27	13	27	12	37	15	25	13
GGTTGATGGCAATTAA	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CCTAAATTGTCTGGAG	alt_1093_reverse	1	0	1	1	0	4	2	2	0	4
ACCATTATTCCGGCTT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGGTTCTTCACTA	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
GTCGAACTTTTCTCGC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TATCCCAGACTTTATT	alt_1093_reverse	18	26	19	21	46	23	33	15	31	20
GCTCACTGTAATGGTT	alt_1093_reverse	24	44	36	32	48	28	33	26	42	31
GAAGAGAGGCTGGGTG	alt_1093_reverse	34	45	34	33	46	23	43	19	67	24
AGTGGCATTTATAATT	alt_1093_reverse	17	29	23	28	40	23	32	19	25	13
ATTGCCGTGCACGTAC	alt_1093_reverse	1	7	3	5	5	0	4	0	5	0
TTACTGACGATTTACC	alt_1093_reverse	17	27	29	26	47	20	19	19	37	16
AGGGAACCTTCCTCCT	alt_1093_reverse	6	6	4	1	2	2	1	3	8	3
CGATACCGGCATCCCT	alt_1093_reverse	19	18	12	10	15	10	26	19	19	8
TTTCTTGTAACTTCGT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCCTCCGTTTACA	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCAGGCGTTGCCT	alt_1093_reverse	5	12	17	5	3	6	11	9	16	9
TCATACACGTTAAATC	alt_1093_reverse	8	8	4	6	3	5	10	8	9	7
TTTCATAGCTTACAAT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
ATGAGACCCCGTATAA	alt_1093_reverse	2	6	4	5	3	6	7	1	6	6
CGGTTTTAAGAAAATT	alt_1093_reverse	88	108	127	110	109	101	122	89	133	81
GCTTTCTATATTTGAG	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCACCAACGTAT	alt_1093_reverse	58	92	67	40	82	47	93	52	99	43
ACTTCCAATTCTCTCC	alt_1093_reverse	57	57	43	39	72	39	45	30	55	46
GATGTATCGTAATTCT	alt_1093_reverse	40	53	51	43	64	54	74	44	79	40
CGGCAATCCGTAACTC	alt_1093_reverse	2	6	3	5	0	3	1	0	4	2
CTGTACGGTATCAGGT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
AGTTATTGTCTATCGT	alt_1093_reverse	4	21	7	7	17	8	14	5	16	8
TTAAAAGCCATGCGCC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
AAGTCGCTGGGCGGGT	alt_1093_reverse	39	59	45	46	66	35	64	43	58	33
GTGTATGTCCTCAAAA	alt_1093_reverse	7	12	12	17	22	4	25	8	18	8
TCTTGATGCCGTGAAG	alt_1093_reverse	2	8	0	4	7	4	5	2	10	2
AAGATCAATATAACAG	alt_1093_reverse	24	47	20	22	31	21	40	21	46	24
TACATAAAGGTACGGC	alt_1093_reverse	12	12	17	7	9	2	7	5	13	5
AGCTGGGCTAATAAAC	alt_1093_reverse	1	0	0	0	0	0	0	0	0	0
CTGAAAGTAAGTCTGT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CAGCCAGTGATTAGGG	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGCTACTTTTGCT	alt_1093_reverse	11	23	18	15	25	20	15	10	39	12
TACCATTGTAGGTCGC	alt_1093_reverse	32	55	53	47	55	31	58	36	76	34
AATGTATTCCTTAGCT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
GACCACTATATCGCAC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TAACGCTGGGATATAT	alt_1093_reverse	38	90	62	61	67	44	95	41	68	37
CGTAACGTACGTGGAT	alt_1093_reverse	8	20	14	11	16	11	21	6	18	7
AGGGGCTTGGCACTTT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TTTCATCTAGGCTGGT	alt_1093_reverse	13	29	16	15	25	10	21	9	28	9
TTCAATCTCTAACCGT	alt_1093_reverse	21	31	30	24	35	11	29	18	43	15
GGTGATGGCGTCTCGC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CATCCCGACGCAGCCT	alt_1093_reverse	32	51	32	20	75	32	69	27	61	25
CACAGCCGAGGTCTAA	alt_1093_reverse	0	1	2	2	5	1	1	1	8	3
GATATGAATGGGAGTT	alt_1093_reverse	28	37	30	12	48	20	39	20	25	17
TCTTTAGTTTTATAGG	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
AAAGGTTATCATAGCC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TCTCACCGGTAAAGCT	alt_1093_reverse	27	56	17	25	33	25	44	22	53	18
TCGCATTGAGTTTCTC	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCAGGGTCCGTT	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGGGGCACCTGAA	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CTATTTGTTTTCCCCC	alt_1093_reverse	33	45	38	33	36	41	41	34	50	30
ACTATTCACGTTCTAC	alt_1093_reverse	7	5	6	4	5	2	6	4	11	3
ACAGTATTGGTGTTTT	alt_1093_reverse	4	8	6	2	14	6	12	5	9	3
GCTTCTCCTCCATTAC	alt_1093_reverse	6	13	15	12	16	11	17	8	13	5
GATGGTGTATTACAAG	alt_1093_reverse	86	214	166	111	196	127	198	116	210	115
GTCTGGTTGGGGTCCG	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATCAGGGGCTCG	alt_1093_reverse	48	59	46	45	58	39	61	34	69	34
TCGTCTCGAAGTGGGA	alt_1093_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGGACCTTGGTCA	alt_1093_reverse	5	26	20	8	26	11	26	11	18	6
TACGAATGAGCGTATC	ref_1042_negative	9	10	6	3	12	8	6	5	7	7
GTTCGGTTGCAGATGA	ref_1042_negative	10	25	15	12	18	11	17	10	22	13
AATAATGATGCCATTG	ref_1042_negative	20	32	33	30	30	37	40	37	46	24
TTACCCTACATACACG	ref_1042_negative	2	3	1	3	2	5	4	4	5	6
CGGGTTTTAGAGTACG	ref_1042_negative	8	5	7	5	10	3	9	8	9	6
ATGCTAATTAAGCTCA	ref_1042_negative	8	6	11	7	13	10	12	6	17	5
GTTTGGATGGCGGAGA	ref_1042_negative	51	70	78	61	69	55	80	51	90	48
GGCATATTCCTTACGA	ref_1042_negative	7	7	5	15	14	13	13	6	11	8
AATACTACGCAATCGC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
ATTGCTGAGTCTGTCA	ref_1042_negative	1	4	5	0	4	5	2	0	0	4
AATACTTTCTTCGGTG	ref_1042_negative	21	30	19	18	38	19	40	21	35	28
TCGAATTGCCCTAGAC	ref_1042_negative	44	67	53	48	54	35	63	35	77	47
TCTGGTCGAGTTGGTG	ref_1042_negative	78	141	83	78	134	83	126	88	129	66
ACATCTAAAAATCGGT	alt_1042_negative	43	61	57	57	82	36	80	36	77	42
CTTGAGCGTCAACGTT	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
AGTGTCAAGGCCACCT	ref_1042_negative	5	16	25	20	20	16	11	7	31	7
CCCCGGCTTTTCAAAA	ref_1042_negative	14	50	28	20	44	11	61	17	53	9
ACCAACTAGAAACGCT	ref_1042_negative	25	28	41	24	44	33	36	16	44	21
AGCGGAATAATTGTCC	ref_1042_negative	14	5	9	6	15	5	10	14	11	5
GTATTCACGTACCAAT	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
GAGTTGAGTGTTGATG	ref_1042_negative	2	5	1	7	3	1	1	3	10	4
GGGCTCAGGAGGTTTT	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TCTAGGTCAGATGCCG	ref_1042_negative	2	11	5	5	11	4	8	3	9	7
CATCTCTTTGCTTGGT	ref_1042_negative	32	45	46	39	56	40	73	34	61	21
CGAGCGTGTGTCTTCT	ref_1042_negative	6	14	7	10	14	8	4	2	17	8
TTCGCACCGCCTATCC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
CTGTGAGCGGATATAA	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TGATCAGCCTCGTTTG	ref_1042_negative	15	33	24	22	32	17	47	23	33	20
AGAGACGGTTATGCTA	ref_1042_negative	6	13	13	6	11	9	19	12	26	14
CAAGCCTCTAGAACAG	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
ACAGTATTAATAAAGA	ref_1042_negative	12	21	14	5	17	11	16	11	15	9
TTTGCTCGCGACTTCA	ref_1042_negative	43	87	52	46	57	45	45	38	74	35
ATTGCTCGATCTGAGA	ref_1042_negative	3	6	5	8	4	3	2	6	3	9
AACCTACTACAGTCTC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
ACCATCGTTCGATACC	ref_1042_negative	58	174	85	55	128	59	184	70	172	56
TGGGTACTCTTACGTC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
ACGTATTCTTTTACGG	ref_1042_negative	3	2	6	4	3	7	9	3	6	9
ATAACATGCTTCGTTT	ref_1042_negative	26	56	35	35	53	24	48	34	49	25
GGCTTAGTAGGTTGGT	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
GGCGGATGGTAAGCTG	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
CACCCACCAATTCTCA	ref_1042_negative	15	41	20	21	45	19	33	9	45	7
TTCAAGCCCTTTGAGA	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
GCCATACTCATACGAG	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TTAGATTATCCCTTGT	ref_1042_negative	22	50	35	31	48	23	53	44	32	23
GTCACATCATATCGGT	ref_1042_negative	13	19	16	12	35	11	19	13	19	12
CCTAAGTCCAGTGCCG	ref_1042_negative	20	23	17	19	37	18	43	15	39	9
ACCGATACACTTCTCG	ref_1042_negative	18	13	16	7	14	16	14	8	11	16
TCGGCGCCTAGTAAAC	ref_1042_negative	15	40	20	9	37	15	35	10	43	9
GACCCGTTGCATTTAT	ref_1042_negative	24	44	29	31	43	26	57	26	50	30
GCACCACTAGGGTTGC	ref_1042_negative	5	15	13	4	12	2	11	3	18	5
AATGTTGCTGCCCAAG	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TCTGGGCGGAGCCTAC	ref_1042_negative	2	8	10	4	9	7	15	3	8	10
CTCGCCAAGGACTCTA	ref_1042_negative	7	12	16	7	13	9	16	6	12	4
CCGAACCGACGTCAGT	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TAGTGCTGTATCTATG	ref_1042_negative	18	40	39	34	36	19	36	25	53	16
AACGCCAAACTATGTA	ref_1042_negative	7	5	4	2	5	0	6	5	18	3
ATGTATGATGTGATCC	ref_1042_negative	8	17	10	11	15	8	17	10	15	15
ATGCTAACTCTCACTA	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
AGGTCCTCGCTTTGCC	ref_1042_negative	6	19	11	13	15	11	18	9	27	14
ACTGCGTTTAGATTTT	ref_1042_negative	20	42	24	21	27	20	47	19	32	15
CTCTTCCGGCCGGATG	ref_1042_negative	42	60	39	29	55	33	65	41	57	38
ATTTGCATACATTACA	ref_1042_negative	13	20	20	11	21	9	28	5	12	12
GGGTTTGCATCTCAAC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
AGTTCGTCCCGTTAAC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
CTACTACAAGTCATGT	ref_1042_negative	30	28	23	23	21	22	26	27	32	35
CAATAAATTGGGATAT	alt_1042_negative	14	19	22	9	21	10	18	6	14	3
ATGACTTGTAATAAGC	ref_1042_negative	18	26	24	21	37	7	30	8	19	8
AACACTTTGGTGGTAC	ref_1042_negative	5	6	9	3	16	10	9	9	16	9
CGTGGTCTCTGTGGGC	ref_1042_negative	5	10	4	5	11	4	10	8	10	5
TATCTAATTTGTTACC	ref_1042_negative	5	13	4	6	14	4	5	3	9	7
TCCGTGGGGTGCCTAT	ref_1042_negative	6	3	4	1	4	2	5	3	0	2
AGTAGCTTCACTGTCT	ref_1042_negative	12	17	11	17	19	15	12	10	16	9
TATCTTGACGTCTTTC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
CATCCGACCTTGATCT	ref_1042_negative	125	192	117	95	190	96	198	95	204	79
TGACCGTTAATATATC	alt_1042_negative	21	27	24	25	43	23	33	16	47	7
AGGTTCACGTACTCGC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TATTTAGCCCCTGCGC	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TACCAATTTCTATGAA	ref_1042_negative	71	98	76	62	119	66	123	56	113	36
GAGGTTTTTGTCAGCT	ref_1042_negative	12	34	14	21	15	11	20	11	27	11
CCGTGTGACAAGCACG	ref_1042_negative	10	10	13	7	10	12	18	9	18	9
ATAATTACGAACGAGC	ref_1042_negative	8	31	18	26	26	18	26	15	23	12
GCTATATATCACGTCT	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TAATTCCTTCGCTCGG	ref_1042_negative	0	0	1	1	0	1	0	1	1	0
ATTAACTCAGTTTGTA	ref_1042_negative	0	0	0	0	0	0	0	0	0	0
TTTTTGTCTTACGGAT	alt_4246_missing	18	27	16	11	26	22	23	17	25	14
CGCCTTCCCGTCAACG	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
TGCACATCACTGCGCC	alt_4246_missing	3	16	13	4	9	3	14	4	15	3
ACCTTCGTAATCAACG	alt_4246_missing	18	22	26	24	29	21	31	19	32	13
TGGTGGGAACCCTCAG	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
TTACCCCGGAGTCCGT	alt_4246_missing	8	32	9	12	25	9	23	16	20	7
ACGAGTATTAGTATAT	alt_4246_missing	14	40	12	18	23	18	31	26	27	17
CTCGGTGCATTTCTCC	alt_4246_missing	7	10	8	5	8	3	13	7	7	6
TCTTGTGGAAAACCTA	alt_4246_missing	43	69	62	53	92	48	73	42	84	42
TGCTAGTGAGTCCTAG	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
GCTCTTTGTTTGTAAA	alt_4246_missing	14	26	18	16	40	17	33	16	27	12
AGTTGAGTGCTACACT	alt_4246_missing	14	13	16	5	22	15	22	16	26	7
TATCTCCGATCTGCTT	alt_4246_missing	7	3	5	1	5	3	12	6	3	3
CTTGTAGTTCGTTCTG	alt_4246_missing	10	19	8	6	20	9	20	7	20	11
CTAGATACTTATAGGA	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
AGCGTACTAGGGCGTC	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
AGTGTCTTCCGTTTAA	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
ATTTTTTTCGCGATCT	alt_4246_missing	23	42	22	16	47	39	32	14	33	14
TGCTCATCTGAGGTCA	alt_4246_missing	8	6	5	0	4	3	2	1	2	3
TGTTATCCCAAAGATA	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
AAGGTGTCCTGCGATT	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
TTACGTTCTTAGGCCT	alt_4246_missing	11	9	18	9	25	15	30	12	34	11
CTTATCCTCACTGGGC	alt_4246_missing	4	7	6	3	3	2	4	2	7	3
GGGGAGTTATGGGGCT	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
TGCATAGGCCTATTGG	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
ATCTACATTTCGGACC	alt_4246_missing	9	12	11	5	7	5	10	10	15	6
ATCATCCTTAACCGAA	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
CGGTACTAGGTACTTG	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
ATACTGTGTGTTCAAC	alt_4246_missing	28	37	49	39	59	24	49	24	54	31
TCAAGCTGTTGGTGGC	alt_4246_missing	10	3	5	2	5	3	10	4	11	2
CTGCGCAGGGACGGCA	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
AGACTGCCGTTGCGTA	alt_4246_missing	4	11	10	4	7	2	8	5	10	1
TCGGTCTAACTTAATG	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
GGTAACGTACGACGCA	alt_4246_missing	13	19	8	9	28	6	13	6	17	10
TCTGGCTTTCTTACTC	alt_4246_missing	0	0	2	1	0	0	0	0	2	0
TTCTTCATCGTTTTCG	alt_4246_missing	5	6	7	6	7	8	9	5	8	7
TTAGAGCACGAACTAT	alt_4246_missing	18	18	29	15	29	18	35	18	28	17
AATTTTGCTGCTGCGC	alt_4246_missing	14	21	19	19	21	13	27	8	23	14
CTGAGGGCCAACTTCT	alt_4246_missing	4	13	6	6	10	6	19	6	9	10
AACGGGCGCTAATTTG	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTTTTACAGTTG	alt_4246_missing	9	11	5	3	11	3	15	4	11	3
CTTCATAATGTCTCAT	alt_4246_missing	13	17	13	6	12	9	8	8	17	12
GGGGGCCAGATCGGGT	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
AGTCTATCATGAGAGT	alt_4246_missing	3	5	1	3	9	3	4	5	9	6
CCTGCTGGCGCCGCGC	alt_4246_missing	0	0	0	0	0	0	0	0	0	0
TCGTAGTTGGATTGGC	ref_6015_new	19	19	30	19	22	21	25	15	27	17
ACCGGTTGGTTTGCAT	ref_6015_new	54	73	41	50	71	38	83	34	85	32
GTCTTCGCTGGCCATT	ref_6015_new	11	8	13	5	14	12	13	10	13	7
AGCGGTAATGCTATGA	ref_6015_new	5	6	10	4	5	2	8	5	5	2
AGTGGTCTCCTGGACA	ref_6015_new	21	50	31	30	76	25	52	28	55	27
CTCGACTCCTCCTTTA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTTTCCGGTACTTGCG	ref_6015_new	0	0	0	0	0	0	0	0	0	0
CACTTACTTAATCGTC	ref_6015_new	19	27	22	17	19	22	26	13	25	16
CTTCTGGGGATTACCT	ref_6015_new	8	11	9	10	15	7	23	10	11	5
GGCGAAGTGTATGGTC	ref_6015_new	6	9	15	8	7	3	7	3	12	4
TGTCTTTACATTCAAT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
ATTCGTAACCACGCCC	ref_6015_new	5	15	8	4	12	11	18	6	20	8
CCCGTGGATTCGCTGA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTTCATTACAT	ref_6015_new	15	19	4	13	22	10	15	15	9	12
TTCGACGGTGGTCTCA	ref_6015_new	7	5	5	8	13	3	9	6	7	8
CGTTCTATTCGAGGTC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
ATTTTGTGCGCTGTGA	ref_6015_new	4	13	8	6	7	8	8	3	11	5
TTATCTGTGTGCTTGC	ref_6015_new	41	52	40	34	50	26	54	38	56	24
GATCTGCAACAGTGTA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TGCAATATGGAAATCC	ref_6015_new	30	45	31	27	27	33	36	20	34	31
TCCTGTTTTACTCGAC	ref_6015_new	25	64	56	39	38	23	54	31	65	24
GGTATTTACCTACCAC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TGGTAACTTTTTCCGA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTCATTTTAATATCTT	ref_6015_new	8	9	7	15	16	14	8	6	11	7
TTGGTTGTTATACGGT	ref_6015_new	29	41	29	24	32	20	34	24	48	18
TAGGCGGCGCCCACGT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTCTTGGGCCCTTAAT	ref_6015_new	61	78	66	52	96	60	80	60	105	45
TACGTAGAGACTTCAT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
AGTCGATCATGCTCGC	ref_6015_new	20	19	21	7	16	13	27	16	16	13
GTTAAAGGCTTTCTCG	ref_6015_new	22	38	38	39	46	26	35	28	37	23
ATGGCCCGCGCATTTT	ref_6015_new	5	4	4	1	5	0	5	6	6	8
ACGAACTGTAGCTATT	ref_6015_new	8	15	14	8	9	6	16	7	13	7
ACCCCGTCATCTTCGT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
AGTCCGTGCTTGGTAC	ref_6015_new	2	15	5	7	10	9	19	4	11	6
CAGGTACAATGACCGT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
CGACCACAGACTCGGC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TCAGTCACTTTATAGG	ref_6015_new	47	68	39	43	76	32	78	31	60	42
CTAGGCCCTCTTGCTG	ref_6015_new	0	0	0	0	0	0	0	0	0	0
GTCCATAGGCGCATTG	ref_6015_new	4	4	4	6	4	6	3	3	6	1
GGGACATCTACGTTCA	ref_6015_new	27	28	17	16	18	19	10	16	29	13
CCGTTCGACATCGAGC	ref_6015_new	35	23	43	29	29	24	40	24	21	23
ATTTTGCTAGGTCTTA	ref_6015_new	13	21	15	16	13	10	27	10	17	4
CGGCCCAGTCTGACGT	ref_6015_new	23	43	42	34	46	22	37	27	45	28
GCGATAGGAGGGTACT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TAGACACCATTACTTG	ref_6015_new	7	17	15	14	9	2	8	10	15	8
CCCAACGGACACGCAC	ref_6015_new	105	121	119	100	120	91	118	96	111	73
CTTTGGAAATTTAGAG	ref_6015_new	2	11	6	4	9	4	15	2	6	2
TTACAACCGGATCTTA	ref_6015_new	15	11	21	16	15	5	27	14	23	8
TCTTTATGGCGAAGCG	ref_6015_new	61	77	78	62	103	53	81	70	97	51
ACTACTCCTGTATGCT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TGAAATTGGTTGTCTT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
AAGTTTGAAGTTCACG	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTTCTCTCTATTGACA	ref_6015_new	31	35	47	38	46	33	38	25	51	37
CTAATCACATCAACAG	ref_6015_new	31	33	35	39	33	27	28	28	35	34
ATTAGGTCCTATATAC	ref_6015_new	62	111	86	80	102	70	92	67	102	87
CGTCGAGCTTAGCAAG	ref_6015_new	6	6	9	1	0	1	3	0	8	3
AGAGACTTCTGTCTGT	ref_6015_new	1	4	7	3	12	1	9	5	7	5
CCAGTCTGGCGAGGCT	ref_6015_new	7	41	12	9	40	4	31	7	33	6
GAGCATGCCGGTTTTC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TCATAAAGGTGAATCC	ref_6015_new	18	20	22	23	24	19	20	15	22	18
AATGGCGCAGAGCACG	ref_6015_new	48	49	73	55	68	55	82	61	59	69
TATCACAGTGATACCG	ref_6015_new	2	5	5	5	2	5	10	6	6	0
GGCAACTCTCGTATAG	ref_6015_new	8	14	14	10	10	9	24	16	10	6
TTGCAGCCTGCGTTGG	ref_6015_new	0	7	5	3	9	4	2	4	5	1
ACGCAACACTGCGAAG	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTTTAACCGAGTTTCC	ref_6015_new	22	24	26	20	24	27	26	30	16	18
TAACTTCGTGATACCC	ref_6015_new	5	9	5	4	3	8	7	3	5	4
ACGAGTTTCGGTTGCA	ref_6015_new	24	50	46	39	60	30	54	35	58	25
CCTCAAGTCCATTAAC	ref_6015_new	0	2	3	3	4	2	2	2	8	4
CTCGAATATTGCTTTC	ref_6015_new	3	2	1	1	0	2	3	0	1	0
TCTTGGTCACGGTGCG	ref_6015_new	0	0	0	0	0	0	0	0	0	0
ATTGGCGCATACGAGT	ref_6015_new	6	15	7	4	9	3	8	10	6	4
ACAATTCCTTGTATTT	ref_6015_new	36	27	35	25	32	23	34	20	35	26
AGGTCCGTGTTATGGT	ref_6015_new	55	54	72	65	72	49	67	42	68	57
GTGGTGGAGGACAACG	ref_6015_new	19	26	15	13	23	10	30	11	32	14
CGGGTTCGCTCTATAC	ref_6015_new	16	15	20	8	15	14	18	13	19	7
GAATCTTAGTCGGCCA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
GCGCCTATCGTCAGCC	ref_6015_new	44	45	35	39	75	30	58	24	57	22
CACATCCCTTGGGTGC	ref_6015_new	19	62	17	15	66	16	66	25	46	10
ATGGCGCGGCCGGTAC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
GTTCTCAGTGCTTTCG	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTTAATTACGGACTTA	ref_6015_new	2	42	3	3	35	4	33	0	39	1
GGCTTGTTTTTCACGG	ref_6015_new	3	11	11	5	4	7	8	6	4	3
CTTGGCCGTCAGGAAA	ref_6015_new	34	41	37	39	47	37	47	34	54	35
TTTCACATCTGCCTAA	ref_6015_new	51	91	82	72	91	64	89	67	100	62
CCACTGATACTGGAAA	ref_6015_new	2	9	4	9	9	8	12	7	15	1
GCTCGCAGTGTAAGCG	ref_6015_new	20	20	13	14	18	10	15	6	26	8
CTGGAGTCAATTCGTC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTCGTAAGGCCGTTTG	ref_6015_new	9	17	17	9	15	7	20	12	22	10
TTAAGTGGACCTATTG	ref_6015_new	26	34	29	37	29	36	35	16	55	27
TTCGTTAATGTAGGAG	ref_6015_new	22	22	20	20	13	17	31	15	31	18
CGAGGAAGAGATTCGC	ref_6015_new	3	5	4	6	4	10	3	12	8	4
CGTTATTGATTATTCG	ref_6015_new	12	20	15	14	17	10	17	14	25	13
TCTGTTGTCACTACCT	ref_6015_new	17	20	15	16	9	13	15	9	13	14
AGAACGACGTTGCCTA	ref_6015_new	8	7	9	6	18	13	19	6	5	9
TCGCACCCAAACTTGC	ref_6015_new	16	23	22	26	31	21	22	25	25	14
TGAATCCCATCGATGT	ref_6015_new	44	55	50	35	51	36	38	49	51	35
TGTGGAAGCATCTGCT	ref_6015_new	12	30	14	22	21	17	18	13	24	16
TCGTGCACGCCTACTT	ref_6015_new	6	5	5	2	4	1	7	4	7	6
GATCCCTTAGTTTACC	ref_6015_new	6	6	16	8	15	2	11	8	12	13
TCGCACTTCTAGTGGT	ref_6015_new	16	36	38	21	42	16	30	17	34	23
TTTTGCCAAGTACTTT	ref_6015_new	10	8	6	8	13	12	12	9	7	9
GCCGACCGTTCCACGG	ref_6015_new	19	21	31	25	31	16	37	20	37	23
CAAGTCTCCAGTGTGC	ref_6015_new	6	16	16	10	13	11	12	10	14	4
CTTGTAATCATTTTTA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
GATCTCTTTCCGAGGC	ref_6015_new	19	18	18	13	27	17	15	14	16	17
TCCGGTGGCGACAGGG	ref_6015_new	34	23	23	25	33	11	20	10	20	24
CGAAGAGCCTTATCCT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TTATAGCTCCCGCTGA	ref_6015_new	8	11	12	10	7	13	15	9	22	4
CCTCTTTCCCTTATGA	ref_6015_new	40	60	48	33	60	51	64	35	79	49
TTTGAGTACGACCATG	ref_6015_new	24	32	25	16	19	14	21	14	22	13
TGGGGTATATGTGACG	ref_6015_new	6	12	21	4	13	16	17	11	18	13
GTACAAACATGCTTAC	ref_6015_new	5	19	9	9	12	19	14	15	19	14
CTCAAAAATTTAGCAC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
TGCATCTTGTTACCAT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
ATCTTTTCATTATACG	ref_6015_new	11	16	19	19	25	30	19	22	22	20
TACCGGTCGCAGATAT	ref_6015_new	31	57	32	37	45	26	61	26	63	26
GCTTTTTGATGTTTCC	ref_6015_new	0	0	0	0	0	0	0	0	0	0
GTCCTCGATAAGTTGT	ref_6015_new	0	0	0	0	0	0	0	0	0	0
CACTACGCAGACGGGA	ref_6015_new	0	0	0	0	0	0	0	0	0	0
CTAGGGGGTCATTTGG	ref_6015_new	25	26	33	23	30	28	32	24	40	20
TGAGGCGATGATGAGA	ref_6015_new	43	76	88	54	86	50	85	47	84	59
CTACGTGGCCCTGCGT	ref_6015_new	48	61	71	58	71	42	62	52	69	61
GGAACAGCGCCATTCG	ref_6015_new	17	19	18	19	20	16	29	15	30	16
GGTTCCTTATCGCGCT	ref_6015_new	13	17	22	22	14	14	32	17	27	11
GAAGGAGGTTTGCACG	ref_6015_new	0	0	0	0	0	0	0	0	0	0
ACTTATATGACGATGA	ref_6015_new	21	65	72	47	70	46	55	42	57	38
CTCATAATGTTTACTG	ref_6015_new	40	48	49	33	56	47	44	37	45	46
AATATTCCCTTTTCTA	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
AGCATCAGAGTTTCAA	ref_1252_RC	23	24	17	16	24	13	28	9	14	21
TTCTAATCTAGACCAG	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
AAGGATATGATTTCAT	ref_1252_RC	17	36	22	18	28	22	21	24	27	23
TGAATACGCCTCCTAT	ref_1252_RC	4	11	11	9	14	8	22	9	7	11
TTAGTGTTCCCGTCTG	ref_1252_RC	5	4	5	3	10	5	5	3	6	5
CCCGGTAAATTCATTA	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TATGTTATACTGCCTG	ref_1252_RC	16	28	24	11	17	11	16	18	15	9
TGAATTATCGCCATCT	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
GCCAGGTGGAGGTTTT	ref_1252_RC	18	35	40	21	44	22	33	22	29	22
GCATTAGTTCAGGCCT	ref_1252_RC	13	3	9	10	16	12	13	15	10	10
ACTAGCCTTCACTTCG	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TAAGGTCATTCTCAGT	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TGGCTTCTAATTCAGC	ref_1252_RC	13	18	19	21	24	13	13	19	16	13
GGGGGACACAATGGCC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TTGTCTCAGCGTTCGA	ref_1252_RC	78	126	83	84	103	78	105	57	93	61
TGACCCCCGTCATAGT	ref_1252_RC	48	147	55	35	133	41	162	36	148	37
GTCCGTGCAGGAAGCG	ref_1252_RC	13	29	20	14	29	15	26	17	22	22
GTCTGGTTTCTCCGCT	ref_1252_RC	23	40	27	25	31	30	26	31	35	21
TTGGTACACCACATGT	ref_1252_RC	37	66	43	34	52	35	64	43	69	36
TAGCATCATCTCTCTG	ref_1252_RC	10	10	9	11	22	9	20	10	21	9
ATCGTGCATCGGCTTC	ref_1252_RC	59	62	88	55	102	66	75	61	113	45
AACCGATCCATACGGA	ref_1252_RC	12	12	17	9	14	10	14	9	18	12
CCCGGTCCCGCCTGAT	ref_1252_RC	15	14	18	27	17	13	25	18	26	29
CGTAACGCTGGCTCAT	ref_1252_RC	30	40	23	38	43	35	43	29	49	25
AGTTGAGCGTGGATTT	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TGTCCCCTTATACATC	ref_1252_RC	44	41	48	40	51	36	55	32	50	39
AGGTAATTCCTTATAG	ref_1252_RC	147	193	193	161	185	130	182	135	198	128
AGGATATGTACGCATA	ref_1252_RC	29	35	38	19	39	39	37	20	38	26
AACGTATTAACTCCAA	ref_1252_RC	37	30	48	31	37	33	32	26	46	25
CTCTTCTCTGCCGGGA	ref_1252_RC	29	25	32	24	18	38	26	18	30	15
GAGCCATGGTTGCTTT	ref_1252_RC	54	79	64	52	81	34	106	48	104	49
CCATGTTTGCAATTCA	ref_1252_RC	29	40	30	19	31	17	24	21	33	19
ACTTAGGACACATTCG	ref_1252_RC	37	23	44	21	31	22	27	22	42	24
TGACCCCTTGTCGAGT	ref_1252_RC	61	63	93	84	84	84	74	74	105	63
GGTTAAGAGATTGTAG	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
AGTGCCAAAAACATAT	ref_1252_RC	4	2	4	3	2	5	2	4	4	5
CGCTCGCCGTCTTATG	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TGAGGTTCCTACTATC	ref_1252_RC	17	29	24	18	37	20	43	20	39	12
CAAGTCCTCTTGGAAT	ref_1252_RC	34	49	39	26	43	35	37	20	56	15
ACGAGTTAGACCTGCT	ref_1252_RC	14	7	11	13	10	10	9	4	14	12
CAACGCAGGACCCGAG	ref_1252_RC	43	34	46	29	46	35	39	33	42	54
CGCCAAACGCGGGTAC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
AGTTTTTATAGTTTCG	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
GGAATTTAATACTCGT	ref_1252_RC	35	39	40	35	43	29	47	21	38	29
ACGAAGACTTGCATCC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TGCCATTTATTGTCGC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
TAGTCTTTATGCTGTG	ref_1252_RC	12	6	7	8	13	6	18	8	12	6
GTACCAGCTGTTCGCA	ref_1252_RC	31	56	51	30	61	31	52	22	63	32
AATGTATATCACAGAG	ref_1252_RC	123	122	141	95	172	94	155	96	156	113
GCACAGGTTTGCCTTC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
AGCGAGATCTGTGTCC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
AACATTTGCCATTCCT	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
CGTCAACTAGCCATAA	ref_1252_RC	78	135	94	90	98	69	123	94	122	76
TTCGCCTAGGGTGTCA	ref_1252_RC	9	16	5	6	7	4	11	7	8	11
CCCCATGCTGGTTTGC	ref_1252_RC	30	73	46	39	62	44	87	29	102	35
TGCGCTCTTATTGTTG	ref_1252_RC	48	83	68	55	73	53	80	50	101	47
CCACTGGCTTCTCTTC	ref_1252_RC	156	162	170	169	150	145	146	147	148	114
TGAACGTAAGATTTTC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
ACTAGTCTAGTTTTTA	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
ATGCTTCGCGCTGCTG	ref_1252_RC	16	15	18	9	19	8	15	10	15	10
CGAGCGCCGTCCGTTT	ref_1252_RC	9	9	11	8	11	12	10	3	13	3
GCGATACGCTGACAAC	ref_1252_RC	0	0	0	0	0	0	0	0	0	0
GCGTATTCAGTACTTT	ref_1252_RC	14	17	18	13	25	14	14	15	16	15
TTAAGTAAAGGCATAT	ref_1252_RC	15	10	13	11	17	10	11	13	12	16
TATTTGCCCTTTACTG	ref_1252_RC	9	7	13	9	13	4	6	10	7	10
GCCCGCTCACGATGTC	ref_1252_RC	35	45	55	42	45	25	48	35	50	35
AATGTTAGCACGACAA	ref_1252_RC	23	25	22	10	20	23	21	24	32	12
TAGCATAATGGTGAAG	alt_5916_new	46	83	65	58	53	49	79	68	75	61
GGGTACCCGATTTCTT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
GCATATATTACATCAT	alt_5916_new	7	8	12	6	13	6	10	15	7	8
TTGGCGAGGTGGCGGT	alt_5916_new	27	21	19	19	20	16	23	12	17	17
TTGTTGTTCCCAGCAT	alt_5916_new	31	48	48	37	44	29	41	38	60	34
CCGCGACAAGCGAAGA	alt_5916_new	5	17	16	5	16	18	16	6	10	8
TTGTTTAGTATCAGAC	alt_5916_new	50	56	52	53	57	38	88	44	69	36
GCCACTACATACGTGC	alt_5916_new	47	77	91	47	64	55	81	57	78	50
TATATTTGCAATTTTG	alt_5916_new	16	23	21	12	23	6	17	10	14	10
TTCTGAATAAGACTCA	alt_5916_new	0	0	0	0	0	0	0	0	0	0
GACCTGGCAACACGCA	alt_5916_new	24	55	42	44	47	43	39	24	44	20
GTAATTTTCGATCTTA	alt_5916_new	11	7	7	8	14	6	15	7	10	5
ATCATATACTACGGTT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
GTAGTGTTTGATAGTC	alt_5916_new	11	13	13	9	15	14	20	21	19	9
GGGAGCAGTGTTATGG	alt_5916_new	1	3	1	0	2	1	0	1	3	0
TCGGCCTTTTCAGTAG	alt_5916_new	64	92	97	62	102	59	98	64	87	63
CACTGCACGCAAGTCC	alt_5916_new	81	101	82	71	96	67	119	50	113	58
TCTTACCCCCCACTTC	alt_5916_new	36	96	46	45	96	57	97	46	81	53
CTCCTTCATTGATACT	alt_5916_new	25	41	33	23	38	31	43	22	49	25
ATGGCTCCACGTCACT	alt_5916_new	64	84	46	52	70	39	104	39	73	42
GGCACATGAGCAAATC	alt_5916_new	133	156	168	121	158	136	148	101	175	101
GATGATTGTCCTTTGG	alt_5916_new	11	14	12	14	9	8	23	8	15	12
CTGTGGTCAGAACGTA	alt_5916_new	0	0	0	0	0	0	0	0	0	0
TTTTGTCGCCCTCTTG	alt_5916_new	20	21	24	20	45	21	18	11	25	14
GTTGTCGATGGGTTTA	alt_5916_new	14	17	18	10	19	8	17	6	11	12
AAGCAATATTCCAAAG	alt_5916_new	27	40	15	17	27	10	26	14	45	13
GCTGATCCTAATCTGG	alt_5916_new	20	15	13	16	13	10	21	18	18	11
GTTCGTATAATGAATG	alt_5916_new	0	0	0	0	0	0	0	0	0	0
TATAGAGATGCCTGCC	alt_5916_new	0	1	0	1	2	0	1	0	1	2
TCAATGTTTGTTCAGA	alt_5916_new	15	31	14	19	26	15	21	21	43	14
TGGTCTGGGGAATCTT	alt_5916_new	18	15	14	12	17	8	20	15	14	9
TTTTTAATCATGGGAA	alt_5916_new	5	8	10	14	5	6	17	7	10	7
TCATATGTAGCGCGCT	alt_5916_new	27	42	32	29	36	22	39	22	33	26
GAACCGGCCGCATGTT	alt_5916_new	15	39	24	12	38	20	33	16	32	22
ATTATATGGCATTGGC	alt_5916_new	49	73	74	71	81	53	89	65	90	64
CCGCATACGTATTACT	alt_5916_new	32	47	43	37	51	36	53	33	69	45
CGTTTAACGTGGTAGC	alt_5916_new	48	75	67	79	63	65	66	59	72	37
ATTTATCCTGTGCAAA	alt_5916_new	66	104	61	48	78	52	89	63	77	63
GTTTTTTGCAGACGAA	alt_5916_new	2	3	2	2	2	3	3	3	6	2
CGTCCAGTGAGCCCGG	alt_5916_new	0	0	0	0	0	0	0	0	0	0
AGCTACCCTCGTGGCA	alt_5916_new	4	27	18	14	36	10	29	16	33	11
CTCGGTATTTTGCCAG	alt_5916_new	12	29	28	15	20	11	29	27	29	19
ATATCCAGGTCCCTGT	alt_5916_new	5	15	13	8	10	7	24	13	13	20
CCAATTGTTATATGTC	alt_5916_new	71	98	93	68	99	62	102	61	82	56
GACGGGCGCATGGTCG	alt_5916_new	128	195	160	148	173	143	189	144	225	134
TCCCTACACGTGGTAT	alt_5916_new	8	16	14	13	22	15	25	11	17	6
AAAAACAGTATTCTCG	alt_5916_new	32	41	49	32	47	25	58	40	64	31
GTTTACGAGTTGGTAC	alt_5916_new	13	23	18	20	18	12	23	19	27	9
GTAAAATTTTGGTCTA	alt_5916_new	54	91	82	52	94	63	61	69	93	43
TCCGCCTCTTTGTTAG	alt_5916_new	7	17	14	12	21	12	28	11	38	17
ATGAAGGCGCCATATA	alt_5916_new	1	5	1	1	6	3	1	3	4	3
CCTACATGAGGCCCCT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
CTTCACTAGCTCGCTT	alt_5916_new	43	47	39	37	80	23	82	37	61	36
AAGCATGTTCGCGCGT	alt_5916_new	8	14	8	9	11	8	10	6	19	3
CGAAAACCGTCACCTG	alt_5916_new	25	24	26	25	40	26	45	27	42	22
TTTTGATTGCCCTATC	alt_5916_new	9	18	7	8	9	14	16	11	16	10
TGTACTGTTTCTTGTC	alt_5916_new	26	32	19	20	22	22	30	15	30	20
AGTCTTCTCCTCGTCT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
AGGCAGGTGGCGTCGT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
CCTTCCCACTGACCAA	alt_5916_new	54	93	77	55	103	74	96	54	107	41
ATTCGCGCTACGTCAA	alt_5916_new	22	17	21	13	31	16	23	7	38	20
CATTGTCTTTGTGAGA	alt_5916_new	0	0	0	0	0	0	0	0	0	0
GGCATCCGTTCTGCGC	alt_5916_new	0	0	0	0	0	0	0	0	0	0
CCGGATTTGCGGCTCT	alt_5916_new	26	41	35	28	59	33	26	21	50	27
CACCACAAATTTGTCC	alt_5916_new	9	20	13	11	20	8	15	15	9	10
CTGCCGAAATAGGAGT	alt_5916_new	38	54	46	32	45	35	55	38	67	26
CACTTATTGCACTTGA	alt_5916_new	3	10	4	3	8	3	11	7	9	4
GTCGGGGTTACGGAAT	alt_5916_new	21	36	39	38	49	41	41	20	44	33
TCAACTTTCCAAGCGT	alt_5916_new	26	46	37	27	46	28	37	33	50	33
CGTGTCAGGGCCTATA	alt_5916_new	60	107	72	109	108	61	123	76	115	75
GGCCGATTTGGCTGTT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
GCAGGTAGTTCGATGA	alt_5916_new	0	0	0	0	0	0	0	0	0	0
TGTACCGGGTACGTCA	alt_5916_new	64	92	79	50	65	52	98	58	76	49
AGTGGAGATACGCTTG	alt_5916_new	106	140	128	103	131	107	160	92	214	105
AAACAACTTTGATAAG	alt_5916_new	76	75	75	46	93	58	83	64	87	54
GCTAGTTACTTTATTC	alt_5916_new	0	0	0	0	0	0	1	1	0	1
AGTTATCTGCCTACTT	alt_5916_new	1	3	1	1	0	0	2	0	3	0
ATCAAGCAGGACAATC	alt_5916_new	31	44	41	40	56	31	39	28	60	27
TCCGCGACTTGTGTTT	alt_5916_new	132	214	143	128	285	114	263	126	283	110
GGTCTTTCGTGGCTTT	alt_5916_new	21	24	16	30	37	19	31	22	32	25
TTGCTGAATCCTTGCG	alt_5916_new	22	52	43	39	54	35	57	35	42	36
GTATTTTTACTTTCAT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
GTGAGCCTAGACCCTG	alt_5916_new	4	18	7	15	18	9	19	8	11	9
GGCTGTGTTTCAAGTT	alt_5916_new	5	4	3	7	4	3	6	6	6	4
GATCGTCTCTGTACCT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
GCCCCACCGGGCTCAT	alt_5916_new	0	0	0	0	0	0	0	0	0	0
TTTTTAGTTTTGCGGA	alt_5916_new	25	44	28	28	38	24	45	30	55	19
CGTTCCTACCGATCGA	alt_5916_new	11	21	11	18	17	14	10	5	23	4
CAAACTCGCGCTTAAA	alt_5916_new	122	165	147	129	150	100	172	104	185	96
CGGTCCATTTGCGTAT	alt_5916_new	62	66	61	57	67	54	76	47	81	52
CTTCTTTTTTAGAGTC	alt_5916_new	50	67	51	58	56	35	57	42	72	30
CATAATTTTTTACGGG	alt_5221_upstream	4	6	7	8	16	7	14	9	8	4
TTCTCTGAATCGCCCA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCATGATTAGGATATT	alt_5221_upstream	1	1	1	0	0	1	0	0	1	1
TCCGCCATGTGTATGA	alt_5221_upstream	7	5	4	0	8	2	6	4	14	5
GATATACTTCGATTTC	alt_5221_upstream	59	117	60	67	82	67	110	60	117	56
TATGTTGCAGCTCCGA	alt_5221_upstream	64	75	52	48	73	56	95	62	103	51
ATACAAATCTTCCAGA	alt_5221_upstream	45	56	31	34	40	29	60	29	50	20
GCCGGGTTTCATCGCC	alt_5221_upstream	0	2	0	4	1	0	7	0	3	1
GCGCTGCGCCAAGGTA	alt_5221_upstream	7	17	8	6	12	9	21	7	10	2
AATACGTATATTCTTT	alt_5221_upstream	10	20	16	15	13	11	18	13	17	7
TGGAATCTACGGTATC	alt_5221_upstream	24	30	20	11	25	14	27	10	21	17
ATCATGCGGTAAGCCC	alt_5221_upstream	24	27	30	22	33	28	41	11	43	25
TACCTCTGTTGTATTT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGATAAGCTTATC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAATGACGGGACC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CGACCCTTTCTATACC	alt_5221_upstream	1	5	1	6	13	4	7	6	7	5
GCGTAAGTAACTTAGG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTTTCAGTTATG	alt_5221_upstream	3	8	5	6	12	3	1	2	7	1
GTACACACATAGCTCG	alt_5221_upstream	5	12	3	5	11	7	18	3	14	8
GCGGAGGCATGGAGTT	alt_5221_upstream	20	13	14	7	15	16	17	7	28	7
AGCGGAGCGTCCATTT	alt_5221_upstream	3	1	1	6	2	4	2	0	3	3
GCTCGCTTCAGTTTCT	alt_5221_upstream	9	31	20	7	29	18	19	12	23	17
CGGTCTTAAACGATCG	alt_5221_upstream	88	172	80	66	139	63	167	56	174	51
TGCGCGACCTGATCTA	alt_5221_upstream	30	61	33	29	87	32	88	24	93	31
AGTTGACATTCATTTA	alt_5221_upstream	1	3	1	4	1	1	3	4	4	0
TCATACAATTTAGTAT	alt_5221_upstream	5	11	7	9	7	4	12	2	10	2
ATAATCGCCCTGCAAC	alt_5221_upstream	59	101	80	48	99	77	132	52	107	57
TAGGATTAGATGCGAG	alt_5221_upstream	15	21	20	9	16	12	16	9	18	9
TATCAATCATTGGTCA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTGGTCCTATTCA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
ATGAAACCGAGTTCAA	alt_5221_upstream	2	8	7	3	10	6	10	6	21	7
CTCTACCCTTCATTCA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
AAGGATTCACCATCTA	alt_5221_upstream	31	64	42	47	58	34	64	20	58	22
TAGAGGCAGTGGCGCT	alt_5221_upstream	6	16	10	9	22	13	17	8	21	4
TTGGTTAAGGGTTACT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
GCTAATTGTGGGTGTG	alt_5221_upstream	22	63	35	28	68	18	79	25	64	25
TTATCAAATATAAACT	alt_5221_upstream	10	8	6	2	5	5	8	0	11	9
TGTTTGGCATTATTGA	alt_5221_upstream	18	14	10	16	17	9	26	16	34	10
GAGCAGCTCAGGCCAT	alt_5221_upstream	6	9	13	6	15	5	11	8	15	5
GTCTGTTTTTTTGTTC	alt_5221_upstream	32	29	23	18	41	28	31	24	31	15
TCACGTTTTGGCCGGC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCGCCGATTATCT	alt_5221_upstream	13	37	22	10	43	22	29	15	39	9
TGCGAGTTTGCGTAGG	alt_5221_upstream	16	39	18	13	38	10	45	16	24	22
GGTCGGCTGAGTACCG	alt_5221_upstream	16	34	12	22	36	15	25	12	23	7
GCGTTACACAATCCAA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAGCATCCCCTCG	alt_5221_upstream	8	32	15	8	42	20	42	18	39	14
TTGTCTATAGTATAAT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCGACTGTCGACCTGT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGATGATTTCTCAATT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
ACCCAAGTGTGAATCT	alt_5221_upstream	20	48	21	14	40	11	30	22	27	16
GTTGCGCGAGATATGG	alt_5221_upstream	11	29	14	19	29	15	37	22	35	14
CTATCTACCCTGTATC	alt_5221_upstream	35	83	24	41	70	38	80	36	60	27
TTAAAGGAACTATCCG	alt_5221_upstream	50	119	78	61	97	59	115	39	137	45
CCCTCAGAGTTCGTGG	alt_5221_upstream	18	41	31	39	42	18	43	19	46	18
TAGAGCTTCTAACATT	alt_5221_upstream	8	8	6	10	12	4	16	8	13	11
CGCATGAGTAGTCGTC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
GAATATGACCAATCCT	alt_5221_upstream	10	11	12	9	23	8	11	11	14	7
CTGTCAACATGAACCC	alt_5221_upstream	15	20	29	19	26	22	26	14	25	14
TCAGGGCGTGCTTAAT	alt_5221_upstream	2	9	7	3	6	4	12	1	7	4
CTTCTCATGTGCCTTC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCCCCATTTTCTT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGTACCGATTTGAACG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGCACGTGGGTCT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCTTGTCTGAAAG	alt_5221_upstream	13	9	4	5	11	12	24	6	16	7
ATATCCTGAACATTGA	alt_5221_upstream	9	17	7	5	12	7	6	4	18	5
CGAATCCAATATACTT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TAATACCTTATCATCA	alt_5221_upstream	13	14	8	9	20	9	18	5	12	3
ACACCATGTTCTGTCT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCGTAGGTGTTAGTTA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
GCTAACTAGCATGGAT	alt_5221_upstream	6	13	6	4	6	3	10	6	11	4
TCGCTAATTTGGAGTG	alt_5221_upstream	6	9	1	4	5	9	13	1	12	4
TACTTTATCGAAGCCA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCATCTTATTGTGTAA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCTCATCTCCCTTGGT	alt_5221_upstream	23	55	18	27	53	29	78	21	79	19
GTCCGGACCGGGGTGG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
AGCCAGGCCTTGACTG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCCGAATCCTCGT	alt_5221_upstream	8	8	2	1	4	1	5	1	5	0
AACGTGAGATGTTCGG	alt_5221_upstream	3	8	7	2	11	8	8	6	5	8
CCATAGCCCTTCGTGG	alt_5221_upstream	14	16	14	23	19	9	29	15	23	5
CCGCAATACTGGGTTA	alt_5221_upstream	15	18	7	13	22	10	21	8	26	10
GTGTTAGCACCTGCTT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCAGCCTGGCGCGTAC	alt_5221_upstream	81	204	96	99	169	116	211	82	199	84
CCTAATCGAGGGCTAG	alt_5221_upstream	13	20	15	28	22	21	30	19	29	23
TAGTCCTGTGCAGATG	alt_5221_upstream	111	165	115	108	183	92	181	100	157	80
CACATCTCCGGTTTAG	alt_5221_upstream	4	9	3	2	12	5	14	5	14	6
GTGTGTAGTCTGTAAA	alt_5221_upstream	10	20	6	11	15	9	13	2	18	11
ATATTGGTGCCCAATT	alt_5221_upstream	9	21	10	6	17	9	17	4	12	7
GGTCTTCGTCAGACTG	alt_5221_upstream	16	15	11	8	13	11	30	8	28	6
TATCAATCACTGGAGA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCGAAGTTTCTTATTC	alt_5221_upstream	7	26	5	2	14	8	18	6	16	8
GCTTTAGGATCGGGTC	alt_5221_upstream	83	102	82	54	105	78	126	55	105	54
AACACTTTTGCGAATA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CATGCCCCGGTGGATC	alt_5221_upstream	0	0	0	0	2	0	0	2	0	0
TTGCCGGATCGCTATC	alt_5221_upstream	3	13	5	6	11	3	9	5	12	5
TCTTTCACTAATGACG	alt_5221_upstream	8	21	9	4	9	9	13	5	16	10
TCATTTTTGAATCTAT	alt_5221_upstream	16	13	11	14	13	8	18	14	23	7
TTTCGCTTTGATGTAT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGACGGTAAGCCC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTGTTTCTAGTTA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTTACCTGAACCC	alt_5221_upstream	8	15	11	9	22	11	19	12	23	8
CATTGTCCCGTATACC	alt_5221_upstream	6	18	11	5	16	8	17	5	14	12
TTGTCATCTCCCAATC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGTGATTATTGTT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCATTTTCCATGA	alt_5221_upstream	4	11	2	3	5	3	3	0	10	2
GATTCGTGACAAAGTA	alt_5221_upstream	6	21	15	11	26	10	26	15	37	10
TCGATCTAACTCTTTT	alt_5221_upstream	8	15	10	7	18	8	32	5	9	11
GTGAGGCCACGAGAGT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTGATATTGTATG	alt_5221_upstream	11	19	9	7	22	7	16	8	19	3
GTCTCGACGCTTATAA	alt_5221_upstream	25	46	47	40	58	38	43	31	60	30
CTCTTCTTTTCTTTTT	alt_5221_upstream	7	39	21	21	36	22	42	17	37	14
AGGTCTATACTAAACT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
AAGAACTTTCTATTCA	alt_5221_upstream	5	16	11	7	16	4	13	7	14	5
GCTTCTATTAACCTGA	alt_5221_upstream	20	25	15	18	22	15	22	19	29	14
ACTCGTATTCTCTTAC	alt_5221_upstream	11	38	12	11	39	17	29	21	41	12
GTTCTGCTGCTGATCC	alt_5221_upstream	22	23	12	13	28	18	25	14	23	16
TTCTCTTAGCGTTTCG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TTATCGTCGCAGACAA	alt_5221_upstream	11	15	9	8	17	8	18	10	14	6
CCGCCCCATGGGCCTT	alt_5221_upstream	4	14	5	6	12	2	7	3	9	2
TGAGTCCGCGGATTAC	alt_5221_upstream	26	49	30	24	54	13	55	29	75	26
GCAGTTCGAGTCTTAG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAACCGCATGGAA	alt_5221_upstream	31	59	34	49	58	28	55	29	67	36
ATAGATTTTTAAGCGT	alt_5221_upstream	8	29	16	12	20	13	17	11	18	5
CAAAGGTGGACCAGGG	alt_5221_upstream	52	77	67	50	88	58	91	42	91	41
GTTTGCTTCCAACCAA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGAACCAAACAGC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGGCCCCTCCGAA	alt_5221_upstream	10	44	18	12	35	11	47	16	31	11
ATCACGTACGCCGGTA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGCTCGGATCCGC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCTTGGTAAGACC	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGTATTCGACCAG	alt_5221_upstream	6	11	8	1	10	2	7	6	6	2
TCTGAAGGATAAGAGT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
CTCCCGATAGCCAGTC	alt_5221_upstream	69	153	111	93	163	79	167	72	186	75
GATCCCATGATTGGGA	alt_5221_upstream	18	30	13	17	30	12	45	10	36	9
CACTATGTCTAGAGGG	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGTGTGCTCCTTT	alt_5221_upstream	2	12	6	4	8	7	6	2	5	4
GAGTGAATCAACCAGT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCATAAGGGAATT	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTGGGGGAATAGT	alt_5221_upstream	12	40	12	12	26	13	28	23	24	16
TGTAAAAATGTCTGGA	alt_5221_upstream	35	54	52	21	45	25	51	26	64	29
GTTATACCGCGGATAG	alt_5221_upstream	13	22	4	6	15	10	15	12	9	10
TGTTGGTGCGACAGCC	alt_5221_upstream	47	81	59	45	96	40	101	38	89	44
AAAGTTCGTATTTTCA	alt_5221_upstream	12	24	13	17	24	18	20	16	24	12
TCAAACTGAATCGAGG	alt_5221_upstream	5	6	1	3	13	3	15	3	8	7
CACACCCGCCCGGTTA	alt_5221_upstream	10	17	11	7	33	6	31	11	32	11
GTACTGCGAGCTACTC	alt_5221_upstream	9	20	14	12	17	12	24	11	22	10
TCTAAATTGTTCGCCC	alt_5221_upstream	7	10	4	5	15	5	21	10	13	7
TTGTGTGGCGCCGCTC	alt_5221_upstream	38	26	24	30	22	24	35	24	22	26
ACCCTCGGTGCTGCTT	alt_5221_upstream	8	11	11	8	14	7	15	11	25	13
TGGGTTATACTCGTTT	alt_5221_upstream	16	24	28	12	35	23	28	29	38	26
AATGTGACTGTCCGTA	alt_5221_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCACGGCATATAA	alt_5221_upstream	13	11	17	19	19	9	23	5	10	11
AGAAGCGATCACTGTC	alt_5221_upstream	4	8	11	12	16	3	10	10	10	9
CCTACTTCTTCGTCTA	alt_5221_upstream	35	61	20	25	52	26	63	29	66	20
GGTATCTCCTGTTGGG	alt_5221_upstream	10	10	6	3	10	2	10	3	8	2
CCCGGTTATGTTCTCG	alt_1198_upstream	7	13	9	7	10	11	7	9	8	9
ACAGTTCTTGGCCAGG	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
GCAAACCTGCTGTCTC	alt_1198_upstream	48	25	58	46	28	37	37	39	31	39
ATCCTAGAACCGCTCG	alt_1198_upstream	21	16	42	25	27	28	23	34	22	37
TGCGCAGGCTGTGATA	alt_1198_upstream	98	45	125	97	57	117	57	99	58	79
CTGAGGCGGCCCAGTC	alt_1198_upstream	20	13	25	31	17	23	10	20	16	22
GTGCGGATCTATTACC	alt_1198_upstream	54	29	63	62	27	59	39	49	36	51
TTTCATTATTTGGGTG	alt_1198_upstream	46	33	63	56	29	40	23	44	45	55
GTGTAGTTGATCTTGC	alt_1198_upstream	149	113	170	160	108	153	120	139	102	132
AACCGACATCACCCTC	alt_1198_upstream	151	83	192	163	95	159	81	147	97	150
CTCCCACAGTTCCTTG	alt_1198_upstream	66	37	59	62	33	60	31	67	60	62
GCGTTCCTTACTTATT	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
ATACATATCATGAACG	alt_1198_upstream	221	87	271	202	114	226	124	204	108	211
ATGCGCAACGTCTCCT	alt_1198_upstream	142	72	195	169	84	123	80	132	79	138
CGCTCCAAATTTTAAT	alt_1198_upstream	13	13	21	15	9	19	7	13	8	10
ATACACCATTTATTGT	alt_1198_upstream	40	24	60	59	25	53	26	45	35	41
ATACATAACATGAACG	alt_1198_upstream	0	0	0	0	0	0	0	0	1	0
GTGACGCCCCTCACCG	alt_1198_upstream	16	12	14	19	12	11	17	20	13	14
TGAGCGTCGTACCTAG	alt_1198_upstream	26	16	37	20	18	20	15	19	14	31
CTCCCTGAGCCGACCA	alt_1198_upstream	61	37	71	77	42	69	46	77	52	72
TTCAATGGTCCTTAAA	alt_1198_upstream	164	92	197	184	91	152	101	162	119	150
CCTCGTACCTACGCCG	alt_1198_upstream	81	69	111	104	57	83	71	93	64	81
TTGGAATCGTGGGCTA	alt_1198_upstream	268	168	313	287	171	281	175	289	180	265
ACTTGTGCGCACACTC	alt_1198_upstream	77	54	72	59	60	74	57	38	64	41
GCTACTATCAAAGTTT	alt_1198_upstream	99	54	148	97	65	98	55	106	83	93
GGATATTTGTTCAATT	alt_1198_upstream	1	0	4	7	2	1	0	1	3	0
TGCTGTACCGTACCGC	alt_1198_upstream	44	21	66	35	18	22	17	33	33	28
CAGGCGCAGTATGTTT	alt_1198_upstream	54	43	58	72	35	50	34	48	43	36
CGCGCGTCGGGAGTTC	alt_1198_upstream	56	25	64	66	30	47	36	45	48	52
TAGATTCTTGTTGTTG	alt_1198_upstream	35	21	36	32	21	25	17	30	23	33
CGTTAGAAAATATCGC	alt_1198_upstream	133	78	176	137	67	131	69	118	75	123
GTGGTCCAGTAAGAGT	alt_1198_upstream	3	2	0	1	3	1	1	4	2	0
ATGTTGTTCACACTCA	alt_1198_upstream	31	17	28	18	15	20	19	23	9	24
AGATACTTGGTCAGCA	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
TTATTGATTGCGGACA	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTGTGTTTTTGCA	alt_1198_upstream	313	208	368	324	221	294	221	274	232	263
GCTCGCTTGTAGATTT	alt_1198_upstream	21	11	34	29	25	30	18	24	21	21
ACGAGTAGCCGTTTCG	alt_1198_upstream	45	21	56	36	34	56	31	55	28	31
ATGTTTCGTTCAATAA	alt_1198_upstream	120	68	112	92	59	112	56	73	69	76
AGACCATTATATCGTA	alt_1198_upstream	523	312	640	531	328	504	317	508	354	485
CATTTCCTTCGTAATT	alt_1198_upstream	182	84	225	180	65	152	112	158	120	163
AAAGTCGGTCTTCCTA	alt_1198_upstream	24	15	39	13	21	19	7	31	7	16
CGCGCAGGGTCTACCA	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
TATTATTGATTTTTGG	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
GAATACTCTGTTTGAG	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
TAGATGCTCTCGTATC	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
TTGGATGAACGACAAT	alt_1198_upstream	179	89	188	175	102	137	99	153	121	167
CTAGCCCTTGATCTGG	alt_1198_upstream	253	207	306	261	211	252	239	237	218	195
ATCTATCCCTAGAGTC	alt_1198_upstream	28	24	45	32	33	39	22	41	19	31
GGGTGTCGAGCCGACA	alt_1198_upstream	139	80	194	155	81	175	81	116	77	142
ATTGACATATGGACCT	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTCCTTGTGGATT	alt_1198_upstream	34	27	33	32	30	33	37	46	27	30
CCGTTTGTTTGGAAGT	alt_1198_upstream	123	90	138	125	85	111	85	106	76	101
GTATTTGGCATCCACG	alt_1198_upstream	89	49	97	93	61	76	55	83	46	64
TACGCACTAACCGTTC	alt_1198_upstream	72	36	92	73	36	64	43	52	30	69
CCGATACTGCTACTTG	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTCCATCTATGCG	alt_1198_upstream	7	5	9	9	8	3	5	7	0	0
ACTCCAATCAGGCCCT	alt_1198_upstream	24	9	38	28	19	25	14	34	19	26
CAGCTGACTTTATGAC	alt_1198_upstream	176	106	166	134	80	118	90	146	88	135
GATAGGCCGTGGTGCA	alt_1198_upstream	4	6	7	7	3	4	4	4	4	5
CGTTGGATCTTTAAAA	alt_1198_upstream	102	45	91	88	43	84	42	58	53	69
ACGCTGGTGTTTGACC	alt_1198_upstream	35	11	36	23	18	30	17	31	24	32
TAGGCGTGTTCCCCGC	alt_1198_upstream	36	25	40	30	19	35	19	26	32	29
GCGCCTGGGGTCTTGG	alt_1198_upstream	4	2	7	8	3	5	0	2	2	3
ACGCCCTCCGTTCATC	alt_1198_upstream	12	9	27	28	15	17	12	19	11	21
GAGTGCCCTACTGCTT	alt_1198_upstream	21	10	30	28	21	21	16	30	25	33
GTTAACCCCTGATACC	alt_1198_upstream	32	16	38	14	9	35	16	30	16	21
CTGGGTTCGTTTTGGA	alt_1198_upstream	104	56	112	93	50	105	55	95	83	113
TGGAGCAATTATACTT	alt_1198_upstream	41	20	48	40	26	36	20	48	22	35
GTGTTTGGCTTGTTGG	alt_1198_upstream	119	90	125	117	86	123	119	126	86	100
TAGCTTTGCCCTCTAA	alt_1198_upstream	146	101	189	140	95	133	95	137	108	140
AACATAACTCTCTAGA	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAATGCAGGGATG	alt_1198_upstream	153	78	156	115	79	141	92	103	84	126
TTTCCGTGAGGGCCGA	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
CGCTATTTCTTGAATG	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
TTATCCTTTGTTTTAT	alt_1198_upstream	86	40	80	87	34	75	59	69	55	55
CGGCAGTGGAGTTGCT	alt_1198_upstream	89	61	141	108	72	91	57	74	73	103
ATCCCAATTTAGACAC	alt_1198_upstream	40	25	57	47	26	44	25	53	31	48
GCCTCCTAGAGAGCGG	alt_1198_upstream	0	0	0	0	0	0	0	0	0	0
TATATTTCGTAAATTG	alt_1198_upstream	195	113	282	180	107	197	118	182	112	181
TCTATGTGTTTGAAGT	alt_4645_upstream	46	60	71	68	100	56	79	50	82	44
CCCTTACAGAACAAGC	alt_4645_upstream	26	50	45	32	42	47	46	41	33	17
CGGCTGGGGGATAAGA	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTCCTGAGAATAA	alt_4645_upstream	14	19	14	11	20	16	22	9	14	7
ATAGACCTTTCAATTA	alt_4645_upstream	28	40	38	29	34	19	35	23	36	18
TCTGAACGTATTTTGT	alt_4645_upstream	55	57	58	50	61	36	57	38	54	46
GATTTTCATCCGTGCC	alt_4645_upstream	11	15	16	12	8	15	18	6	6	4
TATAGTGCACGCCCCC	alt_4645_upstream	12	55	10	8	33	17	32	14	55	14
GCGGTTTTCTTATAGT	alt_4645_upstream	49	48	52	43	57	36	48	37	53	40
CTTGAGGATTGCTGGT	alt_4645_upstream	22	23	31	18	20	22	28	26	33	10
GAGTCAGTTCTTATTG	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGACGGACGCGAG	alt_4645_upstream	3	0	3	2	3	2	0	1	0	0
ATAACGCCTATGTATT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCTGTGGTGATTT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCTGGCGTTCAAG	alt_4645_upstream	10	11	15	4	9	8	7	10	10	9
GTAACCGGAAAAGCTA	alt_4645_upstream	1	4	4	2	3	2	5	5	3	4
TTTTTGAGTTACAGTC	alt_4645_upstream	37	38	47	59	43	37	43	34	35	40
ATTGGCGTCGATTGAG	alt_4645_upstream	26	27	22	11	32	23	24	30	27	17
TATCTTCTAGCCTGCA	alt_4645_upstream	7	19	14	14	16	9	19	17	12	17
CCGTCGTTGCGCTTAC	alt_4645_upstream	0	17	0	0	14	1	19	1	11	0
TTTTCAATCAGGCAGA	alt_4645_upstream	21	15	24	21	20	14	28	12	33	24
TCCGTAACGCTTTCAG	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAATGATAATCGT	alt_4645_upstream	4	3	10	3	9	6	7	5	9	1
GGCCTGTGGCCTACAT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTACCCGTAAGA	alt_4645_upstream	6	6	3	3	1	4	4	1	3	3
GGCCGGTGCATTAAAG	alt_4645_upstream	13	15	13	8	10	11	13	5	15	6
TACGCCAATTTAATCG	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
GGTGTAGTGCGTAGTG	alt_4645_upstream	45	46	35	35	60	40	45	37	59	24
GCTTTTCCGAATGTTT	alt_4645_upstream	45	54	60	48	53	37	70	41	40	48
CCCATTAGTCGTTTGC	alt_4645_upstream	34	93	35	31	106	30	136	22	128	17
TACCGTTTAACGGGGG	alt_4645_upstream	50	44	66	84	69	54	59	55	55	67
GGCGATGACTTGACAT	alt_4645_upstream	7	7	6	5	13	6	7	6	10	5
CCGCCAGGTACTAGAA	alt_4645_upstream	1	7	4	2	7	6	4	4	7	3
CGCTTCATGCCCAGTT	alt_4645_upstream	3	2	1	1	4	1	6	1	3	0
TATTGACTACGGTATC	alt_4645_upstream	16	27	36	26	13	25	21	14	27	13
AATGACGCTTGATTGC	alt_4645_upstream	30	32	27	35	28	26	31	31	40	23
ATCCGTGGGTTCATAT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
CATCTGGCTATCTCCT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCTACGATATGCA	alt_4645_upstream	23	36	32	47	27	20	31	25	31	14
TTTTCTCAATCGTATC	alt_4645_upstream	11	4	10	11	7	8	10	5	8	7
TATAAGGGCCTTTGCT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
CGTAAGCTGATACTTG	alt_4645_upstream	13	25	15	17	18	15	22	24	33	13
AAGGCCGCATCATCTT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCATTTCGGGCTC	alt_4645_upstream	3	3	3	3	2	3	3	1	9	6
CTACTTCTGATCATTT	alt_4645_upstream	65	58	57	36	68	62	65	58	73	53
GAAACAAATGATCACG	alt_4645_upstream	18	13	15	19	24	9	13	29	21	19
TTGTACTACTTACGAG	alt_4645_upstream	56	35	44	47	47	44	54	41	50	48
GCTTTTATCTGGCGCT	alt_4645_upstream	35	20	52	29	34	23	31	29	36	29
ATTCTTGAGAGCCGTT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCGGTTGTGGCAC	alt_4645_upstream	40	43	63	49	50	34	46	35	63	52
ATTTGGCCCGTTCGGA	alt_4645_upstream	43	56	55	42	56	39	49	42	61	35
ATTCTTGAATGGCTTG	alt_4645_upstream	38	69	59	41	45	36	49	47	59	38
CTAAACACCTCTTTTT	alt_4645_upstream	26	12	24	18	21	16	25	16	31	8
CAATCGTGCTCGAATA	alt_4645_upstream	94	93	100	90	93	74	123	78	79	76
CTCGTTGACCAACTGC	alt_4645_upstream	10	17	14	11	24	7	39	12	22	8
GCACGTTTGAGTCTTT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
TTTACCTTTTGCCATC	alt_4645_upstream	12	17	14	23	15	20	19	11	18	16
TCCTAGTAGCAGTAGC	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
GAATGAATAATGCGTT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGATTCCCACTGA	alt_4645_upstream	45	58	65	45	67	50	80	39	74	44
ACTCGACAAAAGTGTC	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGACAAGCAGCAC	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
GGTATATCTTTTGCTG	alt_4645_upstream	10	12	15	9	7	12	14	7	21	14
GTTAACTGGACGGCTC	alt_4645_upstream	8	3	7	7	10	9	7	7	6	6
AAGTTTTTCCAGTCAA	alt_4645_upstream	8	12	8	9	9	7	8	9	18	6
AGGCCCCCATTTCTGC	alt_4645_upstream	31	34	42	30	31	31	42	35	42	41
CATTTCCAGGTTTTTA	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCTATTTCTAAT	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
GCGAAAAGTCTGAGCC	alt_4645_upstream	103	127	122	113	153	101	163	94	112	89
CCGTGTTTCGGCTATT	alt_4645_upstream	20	24	31	28	26	27	22	25	27	24
GTAACAAATATTGTAT	alt_4645_upstream	45	37	61	36	55	38	60	40	44	34
GTACGCTCGAGGTAAA	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCGAAAATGCACG	alt_4645_upstream	29	46	43	39	34	30	28	30	33	19
TTAGGCTCATTTTCCG	alt_4645_upstream	22	25	29	22	21	17	34	15	30	11
GTATCGTCCTAGGAAG	alt_4645_upstream	24	44	32	22	39	33	37	16	35	29
ACGACGTCGCCAAACA	ref_4645_upstream	469	553	514	448	537	465	584	376	585	381
AAGGACCGCTAATTGA	alt_4645_upstream	25	37	25	33	28	27	38	27	33	20
GTCCATCGTGGGTCCA	alt_4645_upstream	48	40	41	40	66	43	37	30	60	32
AATAGGATACATGGCC	alt_4645_upstream	4	7	10	6	12	5	10	13	6	11
CGGGAAAGGTCTGCCC	alt_4645_upstream	46	38	37	36	34	26	45	35	52	31
CCAATCATTTAGGCGG	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
CAAATAGGTTCAGATG	alt_4645_upstream	81	89	98	98	89	55	92	75	83	72
CCTCTGTATCTGGTGG	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
TCTTACAAGTTCTCGG	alt_4645_upstream	64	71	55	61	73	59	65	53	76	52
TTTCGCCACACTGATA	alt_4645_upstream	0	0	0	0	0	0	0	0	0	0
TACCGCTTTGAGTTCC	alt_4645_upstream	8	8	6	3	10	9	10	6	7	3
TGTCTCGTCTGCTGGT	alt_4645_upstream	2	2	5	5	8	8	9	3	7	5
CAAACTACATTTCAGC	alt_4645_upstream	11	9	12	11	20	13	20	6	13	12
AGTGTTAGAGAATTAT	alt_6017_new	103	147	123	106	146	101	146	102	140	87
GGTTTAACTATGCTTA	alt_6017_new	2	3	2	10	9	3	4	4	3	1
TCATCAGAGAACATTC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGATGTTCCTT	alt_6017_new	120	153	106	102	176	121	179	97	178	98
TTAGCGCCCGTTTACG	alt_6017_new	21	27	33	13	24	13	34	14	22	26
CTGCGATCGCTGGTGA	alt_6017_new	27	52	25	27	47	34	36	28	40	16
AAACGGCCAACGAGCG	alt_6017_new	72	65	67	37	64	36	76	44	66	51
GTGTCCTAAAGGGCTC	alt_6017_new	5	4	11	7	6	3	14	3	9	5
TCCTCGCAGTGTTCAG	alt_6017_new	31	34	17	30	47	15	53	27	37	15
GGCGTTAGTTCGTTTG	alt_6017_new	3	1	3	0	1	6	0	2	9	5
CCTTTTAATTTTTTCT	alt_6017_new	181	238	190	148	242	142	281	159	297	163
ATCATACATGGATGTG	alt_6017_new	26	29	18	23	34	25	22	17	29	20
TAAAGTTCTAGAACAG	alt_6017_new	0	0	0	0	0	0	0	0	0	0
TCTGCACCACGTCCCC	alt_6017_new	68	121	113	91	110	77	153	88	159	73
AACCATCGTTTAAGGT	alt_6017_new	25	24	21	15	25	15	39	19	24	14
GCTCCCACCCATAGTA	alt_6017_new	10	17	13	13	19	12	18	9	11	12
TTCAAGTAGGGCAATT	alt_6017_new	33	32	29	21	35	36	49	20	31	20
CGCGGTGCTGTCAGTT	alt_6017_new	26	39	25	22	35	25	38	23	35	24
ATACATAGCCATTTCG	alt_6017_new	0	0	0	0	0	0	0	0	0	0
TATGTCAACTGAAAGT	alt_6017_new	59	80	59	53	73	70	83	60	80	49
ATGTCTCGCGGCGTAA	alt_6017_new	1	1	6	2	0	1	2	1	2	3
CTAGGACTATGTAAAG	alt_6017_new	9	18	23	11	15	10	31	10	26	9
TTATAGGGGGGGGGGT	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GTTACGGGAGCACCTA	alt_6017_new	2	4	4	1	6	5	5	3	5	2
GAATCCAGCTTCGGAT	alt_6017_new	0	0	0	0	0	0	0	0	0	0
TGACACAAAGTCCAGT	alt_6017_new	0	0	0	0	0	0	0	0	0	0
CTGTCTGTATGATACA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GCCTGATTTTTCTAGA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GACTTATGGTATCATG	alt_6017_new	35	33	51	23	43	28	42	25	35	22
GGACTGATATGCTTTC	alt_6017_new	1	8	3	3	3	4	4	2	2	2
GTTGATCCAATGTGGT	alt_6017_new	111	124	85	94	170	93	144	95	144	72
CACAGGCTGTCTAACG	alt_6017_new	30	55	43	38	55	25	53	29	51	22
TAACAGTCCTTCAGAA	alt_6017_new	7	6	11	6	12	10	15	7	9	7
GGTGTGAACCTTTATT	alt_6017_new	9	7	5	8	12	1	7	9	13	8
GCCTTTCATCGATGCA	alt_6017_new	11	7	6	10	17	6	12	9	15	4
TTACATAGATCGGCGG	alt_6017_new	7	7	9	9	4	8	7	7	10	2
CGTTGTCGGACCAACC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GCTTGACGCCAATGTG	alt_6017_new	14	21	15	17	16	14	15	14	16	25
GCCCGGTGCTGATCGT	alt_6017_new	0	0	0	0	0	0	0	0	0	0
CTGGCTTAACCTGCAA	alt_6017_new	11	22	9	14	32	9	22	11	23	11
TATGGACCGTGTTTTG	alt_6017_new	37	45	33	33	42	27	41	27	39	29
ATCCATTCTAGCCATG	alt_6017_new	20	32	29	15	27	18	26	19	27	16
CAATCTCCTACCCTCC	alt_6017_new	4	2	6	3	11	5	10	11	14	5
CCCTGAAGTCATCCCG	alt_6017_new	0	0	0	0	0	0	0	0	0	0
ATGCAACGTCATTTGC	alt_6017_new	20	17	17	10	33	9	30	13	34	8
GTGTGGTTTGGGACTT	alt_6017_new	15	10	11	11	16	9	16	7	22	7
TGGGATTGGCCGCATT	alt_6017_new	23	35	29	24	33	22	45	19	23	19
AGCCAGTCGGGTTCGT	alt_6017_new	34	113	60	42	118	36	110	31	89	39
CGAGTTAGCGATGCAG	alt_6017_new	37	50	51	23	48	47	47	44	58	49
CTTGTGCAGCGACTCC	alt_6017_new	39	43	41	25	47	23	30	23	40	28
ATTTTGTCGTTCTGTG	alt_6017_new	20	28	24	16	25	19	31	15	21	14
CTTTGTCCTGGTTGCC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
ATAATTGACCGTGCTC	alt_6017_new	20	25	29	20	28	27	31	21	37	22
TACAAGCGAGTATTAG	alt_6017_new	4	4	5	2	6	3	4	3	5	2
TGCTATTGGTAACCCT	alt_6017_new	56	64	84	70	84	46	78	61	65	48
GCATCGTCCAGGTCAA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
TACGATCCGGGCAGAA	alt_6017_new	2	2	4	5	2	4	3	3	2	1
CTGGTTTCGTCTTTGT	alt_6017_new	40	42	39	33	49	24	47	44	56	30
TTAGCGTGTTTCGTCC	alt_6017_new	11	17	16	9	19	7	15	7	22	6
TTAGAATCAGAGTTAA	alt_6017_new	22	55	30	24	30	26	38	29	48	40
AGTGCTTCTTGATGGA	alt_6017_new	54	76	71	63	79	51	85	64	88	61
GTTACCGAAGATACGT	alt_6017_new	7	5	5	3	4	6	6	5	4	6
AGTAGCTGTTGTCATG	alt_6017_new	0	0	0	0	0	0	0	0	0	0
CTTCTAGCATATTATG	alt_6017_new	7	6	18	9	17	15	18	12	20	7
TTTTTCTTGATAGGCT	alt_6017_new	9	9	9	19	19	12	17	6	10	7
ATTCTTTCTCGATGCG	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GGCTATCCACAATCTT	alt_6017_new	29	44	41	37	46	33	51	34	46	27
GTTTGCTTGCCCTATG	alt_6017_new	21	28	31	25	26	24	30	17	20	16
GCCGTTATTTGCTGCC	alt_6017_new	4	4	4	2	10	3	5	3	7	7
ACCTACTCTGTGTTTG	alt_6017_new	0	0	0	0	0	0	0	0	0	0
AGTATTTATGAGCCTT	alt_6017_new	14	31	22	25	26	24	24	20	30	31
ATTCACTCAATTTTGT	alt_6017_new	16	16	26	10	15	15	19	13	18	8
CGGCCCTTCTCGGCCT	alt_6017_new	26	37	42	33	50	26	31	22	25	29
AGGGTCTCACCAATGT	alt_6017_new	9	7	3	4	10	5	4	12	13	8
CCTTACCGTAACTCAG	alt_6017_new	19	45	16	15	43	10	40	15	56	14
ATCGGTTTGACCGGTT	alt_6017_new	64	88	64	63	103	64	88	66	106	56
GTATGTGTTCGGGCAC	alt_6017_new	3	4	8	2	5	2	4	4	3	0
CCTTACAACGTTCGCT	alt_6017_new	50	97	56	74	118	55	138	63	126	47
CGGCATCGATGGAGTT	alt_6017_new	54	71	74	51	83	70	83	70	56	60
TCAAGTTGGTCACCGG	alt_6017_new	12	20	13	25	20	12	22	19	27	13
GTTGCAACGAAGGCGC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
ACCGCGACTAGAGTTC	alt_6017_new	15	37	22	14	19	11	32	13	36	12
CTTGTCAATCTACTTT	alt_6017_new	38	38	46	37	36	35	42	26	51	44
TTCGGCATGGGACGAT	alt_6017_new	71	79	75	64	111	65	75	62	97	51
TATAGACCCCGGTACG	alt_6017_new	8	8	12	13	14	11	11	10	17	6
GTCTTTGAAACGTGTT	alt_6017_new	17	23	23	15	32	17	25	10	31	15
TTTTTGGTTTCGGCAC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
AGTTGTAAATTTCTGA	alt_6017_new	39	65	58	40	59	46	65	32	65	26
TTTTATCTGCCTGGAG	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GTTAGCTAGTTGTGTG	alt_6017_new	17	12	20	16	25	13	33	14	32	12
ATTAGGTAGAGCTATG	alt_6017_new	6	7	7	7	6	4	16	5	5	4
GTAGGGAATATTGAAC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
ACATCGATCAGGGCTT	alt_6017_new	1	15	3	1	10	5	12	2	8	5
TTTAGCCTACCTGAAC	alt_6017_new	11	33	16	12	40	16	49	11	44	13
TGGCTACGTCTGATCA	alt_6017_new	113	125	126	109	116	120	142	103	138	102
AGCTTTAGCCGATCTG	alt_6017_new	15	11	8	13	15	9	14	6	15	8
AATTGACAACTCTAAA	alt_6017_new	14	28	24	17	25	17	27	18	28	13
GGTAGTTGGTTGATCG	alt_6017_new	22	19	18	10	20	14	17	10	20	10
TGCGAAGTGGGTTAAA	alt_6017_new	3	6	9	8	7	5	4	2	12	1
CTTAGTTTTGTTTGTA	alt_6017_new	137	203	196	137	232	138	203	131	217	114
TTATTGCAAAATCTTC	alt_6017_new	11	10	11	13	8	9	12	7	13	6
TCCAAGCAGACCACCA	alt_6017_new	15	4	10	5	14	6	11	11	13	10
AAACATTTCTTGTGGC	alt_6017_new	15	14	9	12	20	7	17	11	23	8
TTCAGTCAAGGGTCCA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
CGGGACCTGGCCTATA	alt_6017_new	30	55	28	38	48	31	35	24	44	25
CGCTAAGAAACCTATT	alt_6017_new	16	15	21	24	18	32	24	16	20	12
TGTGTGCCATCTCTGC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
TTCCTGCTGTACTAAT	alt_6017_new	0	0	0	0	0	0	0	0	0	0
TAAATTCCATTATGGC	alt_6017_new	57	54	62	46	54	51	38	35	33	41
TTAACTCGCTGGCCTG	alt_6017_new	21	36	25	27	19	17	38	20	43	20
TTATTTCCCCTGCAAG	alt_6017_new	50	65	63	63	89	53	84	52	90	45
GTAATTGCGTTTGCAT	alt_6017_new	0	0	0	0	0	0	0	0	0	0
ATAGTAGATTTCGGAA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
CTTACTTGCTCGGTCT	alt_6017_new	33	43	49	46	41	43	49	47	39	23
GCCGGGTTGCGATGGA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
AATCATAAAGGAGTAT	alt_6017_new	44	40	50	26	45	35	35	29	38	25
TCGTGATATTTTGTAC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
TTCCTTATCGCTAGGG	alt_6017_new	0	2	0	1	3	1	2	1	0	1
CCGATATTGCATGTCT	alt_6017_new	2	6	10	6	5	4	9	5	12	0
GTACAGATGGGTTCGT	alt_6017_new	43	62	44	51	74	42	63	50	56	40
TATCTCCAGTCACAAC	alt_6017_new	10	26	33	17	22	25	29	15	27	13
AGTGAGGGGGGCTACT	alt_6017_new	1	1	2	4	1	5	1	0	1	0
CCCAGTATACGCCCAC	alt_6017_new	12	11	8	9	17	8	20	13	15	11
GTCCCCGTTTTTTCTC	alt_6017_new	0	4	1	0	5	0	10	2	10	1
GCAATCTGGCATGCCA	alt_6017_new	46	82	72	61	72	51	95	54	88	42
GATCCAGACACTCTTG	alt_6017_new	1	0	3	2	6	0	3	0	1	4
AGGCCGTATGTAGTCG	alt_6017_new	3	9	15	7	22	9	18	5	20	7
GTACTGGGGTTTCTTA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
CCCAGCCGTTCTGTTG	alt_6017_new	2	30	13	4	28	15	25	8	22	6
CTTTTACTCGACGGGT	alt_6017_new	26	28	28	22	25	20	35	28	24	22
TTATAGGGGGGGGGTG	alt_6017_new	10	3	13	9	8	2	4	6	1	5
GATCGATAAAATCCGT	alt_6017_new	0	0	0	0	0	0	0	0	0	0
GTCTGGGTAAGCCTCT	alt_6017_new	48	51	55	26	59	33	54	31	48	33
TTCCTAACGAGGTTCA	alt_6017_new	39	54	55	43	35	34	44	29	54	34
ACGTATATAAAGTTGC	alt_6017_new	1	4	2	4	3	1	6	1	4	5
ACTCGTATGGAGAAGA	alt_6017_new	61	70	55	54	84	54	78	40	73	41
TAACACTTGGCCGGCC	alt_6017_new	0	2	2	1	4	1	4	3	4	2
TCACGGAAAGCCGCGA	alt_6017_new	0	0	0	0	0	0	0	0	0	0
ATTTCTCGTCCTCGGA	alt_6017_new	31	54	35	30	43	29	35	20	45	27
TGTTTTTATTAGTGCC	alt_6017_new	7	10	18	10	9	3	9	7	8	8
GAAGCTTCCAGCGATG	alt_6017_new	6	10	14	6	12	6	9	12	14	12
CAACCTCCTGCCGCCT	alt_6017_new	25	40	42	34	34	30	51	33	53	23
TTTTTATGTTACCATA	alt_6017_new	14	17	21	12	21	16	30	15	16	13
CGGTACTGGTTTTTAG	ref_6017_new	80	127	63	70	130	77	149	59	146	71
TCCTTTGTAGGTACAG	alt_6017_new	43	39	45	44	47	31	60	32	55	19
GCATCCATGTCTCTGG	alt_6017_new	46	44	35	30	50	25	47	32	40	23
ATCGATACTGTCGATC	alt_6017_new	0	0	0	0	0	0	0	0	0	0
CGGTTAGGGAATGATG	alt_6017_new	26	37	31	26	35	41	45	32	44	29
TAGTTTTTTATATGAA	alt_6017_new	1	1	2	3	5	5	8	0	4	6
TAGAGCCTCACACCAT	alt_6017_new	22	39	40	32	34	21	32	31	38	21
CATATCCCTATTTCCG	ref_5914_new	7	9	10	8	10	6	12	11	17	8
CCAAATAGTCTCGTGA	ref_5914_new	22	20	17	11	22	13	14	7	9	14
GTTAGATCCTTGCCGA	ref_5914_new	18	8	8	8	15	9	23	12	11	7
GGGGTTCCTACTCTTA	ref_5914_new	17	17	28	18	13	19	24	16	25	14
CCGAGGCATTCCGGCT	ref_5914_new	10	11	10	12	17	12	12	13	12	15
TCTCGGGTTCACACCT	ref_5914_new	13	17	13	17	16	9	16	12	7	12
CGGGCTGAACGCACAT	ref_5914_new	2	8	7	3	10	4	5	6	2	2
TTTGGTAATTTTCATG	ref_5914_new	26	28	33	28	30	26	38	32	37	27
ACCACGTTTCAATCGA	ref_5914_new	56	88	85	50	84	63	135	41	101	55
CTCAGAGAGCGGGTGT	ref_5914_new	2	2	0	0	0	0	0	2	1	1
ATTTAGAAAATATAAT	ref_5914_new	1	5	7	6	6	4	8	4	7	2
ATAACAAATCCTACGG	ref_5914_new	2	5	5	6	6	3	9	4	5	3
ATCTAGTGTCTCGATG	ref_5914_new	9	15	13	10	22	12	30	4	11	11
AACCATACCTTGGCCA	ref_5914_new	2	4	4	5	7	5	9	2	9	3
ATTATTATGGCCCTAA	ref_5914_new	12	16	11	8	13	10	19	15	14	8
TTCAGTTTCTTTCTAG	ref_5914_new	0	0	0	0	0	0	0	0	0	0
TTATTTGCATTTGGTT	ref_5914_new	28	70	49	31	55	40	59	19	65	45
TCCTACGTGGTGAGCT	ref_5914_new	27	35	27	35	43	22	27	26	30	12
ACCTGGTCACGTACCT	ref_5914_new	2	33	4	6	26	2	19	2	29	2
TCCTCGCTTCTTGTAC	ref_5914_new	15	50	14	15	41	12	48	7	42	8
CGTTCACTGGGAGATT	ref_5914_new	0	0	0	0	0	0	0	0	0	0
AGCCTACCTTTGTTCT	ref_5914_new	54	85	51	32	104	43	105	42	107	33
AAATTTTATATCTGGT	ref_5914_new	0	0	0	0	0	0	0	0	0	0
CTTGTTTGAGTGAACA	ref_5914_new	0	0	0	0	0	0	0	0	0	0
ACACTCCTAGTATGGG	ref_5914_new	0	16	1	1	13	3	15	2	16	0
GGCTCCCGGGCCTTTT	ref_5914_new	1	5	1	2	4	0	3	0	0	2
GGCCACTCAGTTCACT	ref_5914_new	32	36	24	13	39	15	37	15	35	12
GCAGTGGCGTATTGTA	ref_5914_new	6	7	5	7	11	14	14	6	15	9
TCTCGGTTAACATCTT	ref_5914_new	3	1	4	1	5	1	1	1	0	0
CTAATTATCAGCTGAC	ref_5914_new	36	40	56	36	41	44	43	32	54	30
ATTTTCGGCAGCGGAG	ref_5914_new	85	91	122	80	101	83	97	61	87	81
TCCAGGGGCGTTAACC	ref_5914_new	0	0	0	0	0	0	0	0	0	0
GAACCTTTGGGCTTGA	ref_5914_new	1	9	4	4	6	1	2	1	1	3
GGAAGAGCGTTGTTAC	ref_5914_new	0	0	0	0	0	0	0	0	0	0
GATCGGCTATACCTTA	ref_5914_new	2	7	1	2	12	2	16	2	10	2
CCTTGGGAAATGATCG	ref_5914_new	6	24	12	6	16	8	13	17	13	6
GTCAAGAAGGATGCAG	ref_5914_new	35	50	61	41	49	39	60	38	53	34
CCGCAACCGGTCCTCT	ref_5914_new	45	66	45	41	58	39	62	50	63	36
GGAATGTAGCTTGTAG	ref_5914_new	25	26	30	19	34	31	42	14	44	17
CTCTTGCAGGATAGCG	ref_5914_new	15	25	24	20	22	19	32	21	28	18
ATGGTCCCTGCGCTGG	ref_5914_new	0	0	0	0	0	0	0	0	0	0
AATTGATTGCGGCTAT	ref_5914_new	86	125	103	110	137	85	129	62	115	93
GACCGGCCCAGATCCG	ref_5914_new	30	48	38	30	25	28	40	20	45	23
TGGCTCGGCTTCTGTG	ref_5914_new	0	0	0	0	0	0	3	0	0	0
TTGCGCTCGACCTGTC	ref_5914_new	1	3	1	7	1	0	8	3	4	4
TCTTTGTGAGCCATTA	ref_5914_new	19	36	17	9	31	14	27	25	30	13
AATTGAGATTGTGTCT	ref_5914_new	6	19	13	14	15	20	22	16	23	14
AGAGACTACCTGACGA	ref_5914_new	20	28	32	21	33	24	39	21	28	19
GATTTGGGTGCGGAAA	ref_5914_new	33	44	29	41	41	31	51	34	57	31
TATTCGGCTAATCCGG	ref_5914_new	0	0	0	0	0	0	0	0	0	0
CCTCTACCACATCGTT	ref_5914_new	19	41	31	37	44	35	39	38	47	15
AAGAGAGAATTGTGTT	ref_5914_new	0	0	0	0	0	0	0	0	0	0
TAACATAACCAGTGGA	ref_5914_new	0	0	0	0	0	0	0	0	0	0
CGCGTCTTTTGTGATA	ref_5914_new	0	0	0	0	0	0	0	0	0	0
CTCTGCCTCGCCGGTA	ref_5914_new	0	0	0	0	0	0	0	0	0	0
GGTCATCTCGGAGAAA	ref_4994_fdr	87	41	117	106	28	89	51	84	48	87
ATGCCGTTTAGGATGC	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGCGCATACGTAG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCCTCTAGTCTTG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TACTTTTACTTTTTGA	ref_4994_fdr	46	22	72	51	21	52	18	55	16	43
GAAGGCCAATCGGCTT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGGTCTGGCTAGG	ref_4994_fdr	262	119	322	299	98	293	115	247	122	222
TTCTCAACCGTGCTGC	ref_4994_fdr	49	16	80	40	15	46	20	39	26	35
GCGTCCAGTGTCCCAG	ref_4994_fdr	175	67	191	185	73	171	66	165	55	161
TTCTTATATATTTCTG	ref_4994_fdr	368	166	394	343	186	326	164	340	170	283
GGATAAACTTCTTTAT	ref_4994_fdr	16	12	35	10	9	8	5	20	3	15
CAGGGCGTGAATAGAT	ref_4994_fdr	47	35	58	38	42	34	54	42	51	37
ATTTTCCAAGCTGCTA	ref_4994_fdr	143	53	164	148	58	128	66	119	57	107
CAAGAATGTTCTTGGT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCAGCTATCGAGT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
AACGCATCGCGCGTAT	ref_4994_fdr	206	69	269	244	98	196	104	195	84	177
AGTTCGTCGTTGCTCG	ref_4994_fdr	101	34	105	88	29	84	48	58	44	76
CGAGCCCACCTGTCTC	ref_4994_fdr	52	17	57	65	19	50	24	35	32	39
TGATTGTTGGAACCCG	ref_4994_fdr	22	10	19	18	3	14	4	17	6	21
TCTGCTGGCGTTTAAT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
AAGACTTCTCACTTAG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GGGAGGCTATACAATC	ref_4994_fdr	21	7	29	21	6	17	7	21	8	16
GCTCACGGTCTCCCTA	ref_4994_fdr	54	17	60	52	24	51	19	64	34	30
ATGGTCACGTTTTTCG	ref_4994_fdr	7	4	8	7	4	6	5	5	1	7
GTGTCGCCCGAAGGGC	alt_4994_fdr	327	131	423	342	142	300	124	364	151	281
TTGTGCATAGTGTGGT	ref_4994_fdr	482	263	606	531	252	496	254	504	289	440
ATTGAATGTCTTTAGT	ref_4994_fdr	41	17	48	50	25	36	24	51	18	25
TGTTTTGCCACTGACG	ref_4994_fdr	34	21	55	43	11	33	13	40	16	30
CCTGAGCTATTGCGCT	ref_4994_fdr	21	7	6	19	7	16	9	12	5	18
ATCGGGACACTCCCTC	ref_4994_fdr	22	56	34	36	62	26	53	30	64	32
GGGCTCTCCAACGTTT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTGCCGTAGCGCA	ref_4994_fdr	722	431	832	688	363	606	404	650	389	602
TAGGGATTTTTTTCCG	ref_4994_fdr	123	44	153	165	54	138	50	93	45	108
TATCGTTAGTACTGGG	ref_4994_fdr	133	46	141	144	48	109	50	108	62	133
TTTAGTCTAATTGTTA	ref_4994_fdr	22	16	28	21	7	21	11	14	13	23
CTTTCTAGGTCTCTTA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
AGTAGGTCGTCTGTTC	ref_4994_fdr	109	30	102	94	39	80	49	83	43	82
CAGCACATATATAATT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
AATTCTTTGTATCATG	ref_4994_fdr	14	4	22	18	2	16	6	5	4	16
AATATCCTTTTCTGTC	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCGCTAGCAAGAT	ref_4994_fdr	35	20	59	56	17	38	25	35	15	31
AGCCTGTGTCCTTATT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGTAGGGGAACAG	alt_4994_fdr	20	6	22	13	9	14	6	16	7	19
AAAACAGACGGATGAG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGACTTCTATTGC	ref_4994_fdr	80	48	87	97	37	76	45	79	43	86
GTAATTGCCCATTGTT	ref_4994_fdr	219	92	243	227	105	198	104	259	105	186
CAAGGGAAACCGGTTG	ref_4994_fdr	211	78	221	208	56	185	69	143	73	184
CTGTCGTACCCTCGTT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGGATCTGTCATCGTG	ref_4994_fdr	27	6	20	39	15	40	12	26	7	31
GGTTTCTATTAGCGAA	ref_4994_fdr	153	59	209	174	73	163	88	172	79	145
GGCTCGCGAGGTCTTC	ref_4994_fdr	31	17	42	30	19	28	15	34	11	28
CCTTGTATCTCTTCAG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATTGGTGGGTCG	ref_4994_fdr	82	36	79	99	33	74	23	80	29	73
GCGGTGTCACCACAGA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CAGCGGTTATTCTGCC	ref_4994_fdr	57	27	75	50	36	45	46	44	21	49
CTATTGTTTGTCTGGC	ref_4994_fdr	43	14	40	38	19	33	20	43	15	33
GACGCCACGTATCCGT	ref_4994_fdr	18	19	46	39	17	32	17	39	8	36
TATGTTATTTAAGATT	ref_4994_fdr	137	52	141	139	40	114	53	119	65	106
GTGGGGCATATCGTAC	ref_4994_fdr	54	15	46	65	22	59	20	54	28	44
CAATCGTCTGTTGTTT	ref_4994_fdr	39	17	55	58	16	63	21	54	7	53
AAGCAGAAAGCGCTAG	ref_4994_fdr	43	18	48	37	19	40	14	44	15	41
ACGATTCATGGTGGTC	ref_4994_fdr	117	43	139	132	37	103	49	114	56	102
TTCTACTGTATACCCC	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TGCACGGTATGATTTT	ref_4994_fdr	125	39	138	96	42	104	41	109	50	92
GTGCACCGTCCTTTAA	ref_4994_fdr	90	41	102	106	34	75	39	97	38	58
CGCATGGTGTGATTTA	ref_4994_fdr	128	43	154	132	59	144	73	120	48	115
AGGTCACTCGGCAGGG	ref_4994_fdr	55	26	97	72	25	54	24	68	19	38
TCCAGACACATTTCCG	ref_4994_fdr	198	76	277	209	118	168	82	191	86	170
ATCCCCAGACTCTTAC	alt_4994_fdr	391	169	427	376	168	329	174	354	187	316
CGTATTTCTCTTTCGC	ref_4994_fdr	214	71	247	217	60	189	66	202	77	136
GCATACACAGACATGC	ref_4994_fdr	16	7	27	22	6	9	12	18	7	12
AGTCTTGCAGTTATTC	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTCTGAGGACCGT	ref_4994_fdr	174	81	264	238	80	210	107	213	105	141
ATTAGTTACGCCAGAC	ref_4994_fdr	29	8	35	35	5	41	11	32	13	34
CGACTTTATTTTTGAC	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTTACGCCGTAG	ref_4994_fdr	5	5	2	12	1	4	0	7	5	7
TCCTGAACACTCCGAA	ref_4994_fdr	10	1	8	20	4	9	4	10	10	20
TATCCTCACGGTGCAG	ref_4994_fdr	148	55	166	158	97	139	95	145	75	143
ATGTGCTTGGACATGG	ref_4994_fdr	30	10	51	50	17	32	13	40	15	38
CAGGGTTGCCCATTAA	ref_4994_fdr	152	58	183	163	55	157	55	137	63	136
ATCTGACTTTGATTCG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTATTTTACCTG	ref_4994_fdr	7	2	15	11	11	11	4	15	4	11
CGACCTTAGTCTAAGT	ref_4994_fdr	227	93	279	202	99	229	95	230	123	190
TGAAGTTGTAGCAGCA	ref_4994_fdr	25	12	33	36	15	39	16	23	11	27
GCAGCCCCACCTAGAT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TCATCACGGCGCTCCA	ref_4994_fdr	18	15	14	20	17	7	14	16	23	11
ATGCCGTCAATCTCAC	ref_4994_fdr	101	43	108	99	28	90	42	100	34	93
CGGTTCTAGGTTTTTA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGCACCGAAATCGACC	ref_4994_fdr	123	105	192	175	111	153	105	175	114	117
TTTTTGTTACTTCTTT	ref_4994_fdr	163	57	168	179	55	117	70	148	59	105
AGCTTCCGAGAGTACG	ref_4994_fdr	82	53	101	89	43	94	32	79	60	75
GTTCTCTTATTTGAAT	ref_4994_fdr	181	69	262	241	86	194	76	191	69	188
CCGTGTCGTGTGTCAA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGCTCTTTGGGGT	ref_4994_fdr	263	92	327	241	83	253	104	242	123	221
TTAGCTATGCCGGGTC	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GCTAATTTATCTATTG	ref_4994_fdr	47	28	87	69	15	53	21	57	26	56
GTAAAGTCTTTCATTT	ref_4994_fdr	20	6	46	32	8	22	7	28	17	19
CAATCTGGAATACCAC	ref_4994_fdr	42	12	56	40	12	32	26	28	26	30
CGCACTAACTTGCTAA	ref_4994_fdr	138	59	216	156	72	120	69	142	59	120
TTGTGGTGACGTACCT	ref_4994_fdr	205	98	230	179	72	166	63	186	92	145
TCTGCCCTATCCGCTT	ref_4994_fdr	142	55	220	195	59	129	63	170	67	166
AGCCGTAGGCCCCCGC	ref_4994_fdr	164	67	227	210	78	195	68	199	73	162
TGAATTTGGAGGTTTC	ref_4994_fdr	267	115	300	245	103	239	109	242	112	221
TTGCGGAGTGTACTTA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTTCGCCCCTTT	ref_4994_fdr	99	64	120	103	55	87	61	91	60	104
AAGTGCCCAAAGTCTT	ref_4994_fdr	101	70	118	102	54	103	55	115	57	84
ACATTTCCGCTCATTA	ref_4994_fdr	81	34	99	89	34	73	39	68	45	57
TTGCGCCTCACTATGG	ref_4994_fdr	97	31	153	116	35	93	39	83	55	73
TGTGGTTAACGCCACA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTCGCCCCTTTA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CTAATACATGTATATC	ref_4994_fdr	100	67	129	121	52	113	47	103	63	102
GCCTGGTAAGTCCGGT	ref_4994_fdr	120	81	143	134	68	86	51	124	94	93
TGTATTTTATCAATGT	ref_4994_fdr	63	28	67	72	27	46	30	50	19	63
TGACGGATGGCAATTT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
AGGGACGTCACCCGCG	ref_4994_fdr	32	12	35	27	7	29	13	33	19	25
AATGGTTTCACGCGCT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GGTTATACCATAACCA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
AAAATTAACTCTCTAA	ref_4994_fdr	159	46	203	145	43	143	36	136	47	118
GGTTACTAGATGTGAA	ref_4994_fdr	35	17	59	51	24	46	18	39	17	29
TTATGGTCCACTACCC	ref_4994_fdr	78	49	109	88	24	62	50	64	37	68
ACACGCTCTAGATTGC	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TCGCAACCGGTTAAAT	ref_4994_fdr	72	31	106	73	30	51	35	65	23	54
AAAATGAACCTTTTGT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CCCGATACACATTAAC	ref_4994_fdr	51	54	101	81	50	76	54	74	77	67
ACGTCTTCTAGTATGC	ref_4994_fdr	76	29	91	60	35	77	38	68	27	58
TGTACCATTAGGATAT	ref_4994_fdr	230	104	280	239	92	204	95	240	101	189
CTTTGACGCTCCCTCA	ref_4994_fdr	12	4	8	8	7	5	6	13	16	2
TACCCCCACTCGGGTT	ref_4994_fdr	196	107	302	245	121	213	132	210	122	193
TGGTGCTTGCCTGACC	ref_4994_fdr	69	18	105	87	26	71	38	67	36	80
AACCTCTCCTAGCCCT	ref_4994_fdr	95	44	120	122	34	107	52	99	41	77
TTTTTTTTCGCCCCTT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTATCCTCGGATAGTT	ref_4994_fdr	93	42	104	103	51	80	59	129	60	78
CTGTTCAGGCCGTAAG	ref_4994_fdr	33	10	38	27	15	26	11	38	11	27
CGTAATCATAGGCAGA	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
CTAACCCTGGATCAAT	ref_4994_fdr	27	24	36	29	16	21	15	21	7	8
AAAAAGCCTGAATCTG	ref_4994_fdr	95	48	116	110	51	95	53	85	38	80
CAATTGTCGCCCGTCT	ref_4994_fdr	58	20	66	58	21	55	18	49	30	52
TATAGCAATTCGTTAG	ref_4994_fdr	586	229	698	608	220	566	268	537	240	496
AGCTGTAATCGAGGGC	ref_4994_fdr	127	59	208	157	64	133	75	156	93	117
GCTAGGTCTCCCTTAC	ref_4994_fdr	121	81	119	125	58	90	73	116	66	86
GCGGATTTAGTACTTT	ref_4994_fdr	62	23	81	59	27	60	29	66	32	50
GGTGTCGTAATAACAG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
AGTCAAAATCCTGGTG	ref_4994_fdr	60	42	83	70	26	70	30	69	27	77
CTTACTTGAATAATTG	ref_4994_fdr	46	30	43	52	14	31	20	48	11	20
TGCTTAAGATGTAGTC	ref_4994_fdr	69	24	82	83	28	55	32	79	31	44
TTATCCTGAATTACTT	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
TGGATCTGTTGTGCCC	ref_4994_fdr	9	6	6	10	3	10	6	11	4	13
TGGCCGCTGACCAGAA	ref_4994_fdr	39	19	37	42	13	26	15	37	15	32
TTCCGTTTATTTTTAG	ref_4994_fdr	73	35	110	84	48	78	35	72	36	79
GTTACTTGCGGTTCAG	ref_4994_fdr	0	0	0	0	0	0	0	0	0	0
GTATATTGGGTACCCG	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CAGGCCGCGAAGTGTA	ref_4994_fdr	38	8	43	62	22	46	18	50	16	35
TACGCTCATAAAGTCG	ref_4994_fdr	80	30	80	59	18	46	30	66	24	47
CCTACCTGCGGCTGTT	ref_4994_fdr	123	64	149	123	60	107	54	107	51	96
GGTCTGATGGTTCATG	ref_4994_fdr	190	63	218	173	59	160	68	131	54	138
TGCTTGACACGGGCGT	ref_4994_fdr	19	14	45	23	11	23	8	35	19	25
GGCCGATGGCGTTGAG	alt_4994_fdr	192	74	202	234	68	180	95	188	89	190
TTGCGCAAAATCGTTT	ref_4994_fdr	41	19	47	43	22	46	14	36	20	36
GTCAGGCGACAAAACA	ref_4994_fdr	37	6	38	26	5	27	9	36	10	24
ATCCGTTGCCAACCTG	ref_4994_fdr	57	29	98	82	36	57	34	73	18	56
CATCTAACGTCTTGGT	ref_4994_fdr	162	81	185	189	80	154	81	138	85	129
TGGATATATTCCGTCT	ref_4994_fdr	116	40	143	103	37	105	43	113	44	88
ATCAGTTCTATTACCT	ref_1610_negative	6	20	2	5	9	2	10	3	6	4
GCACCCTATACCCGAG	ref_1610_negative	54	79	68	61	92	50	68	51	105	50
ACCTGTGACCGGATAT	ref_1610_negative	22	40	21	19	44	19	34	14	27	18
TTGGCTTCAATTTTGC	ref_1610_negative	27	44	40	20	52	28	22	40	33	21
GCTACAGTTGGACATC	ref_1610_negative	4	16	7	12	18	9	6	11	15	4
GAATTGAGAGTGTGGC	ref_1610_negative	0	0	0	0	0	0	0	0	0	0
GACGGTATACCACGCT	ref_1610_negative	0	0	0	0	0	0	0	0	0	0
ACGGCTTTTTCTCTTG	ref_1610_negative	22	26	22	28	16	21	25	20	19	16
GCTGAAACGTCTGGGG	ref_1610_negative	0	0	0	0	0	0	0	0	0	0
CGTTCTGACGGGGTTC	ref_1610_negative	45	45	44	31	77	37	64	27	55	37
TTACGAACGCTGGAGG	ref_1610_negative	12	22	18	24	22	12	25	10	29	11
TCTGTTTCGGAGGTCG	ref_1610_negative	19	35	25	16	31	20	26	36	31	16
GATATTGGTTCCTCGG	ref_1610_negative	78	133	92	79	137	79	126	70	123	72
TAGGTGTTTTCAGTTC	ref_1610_negative	2	6	3	6	7	2	3	3	10	3
TGTACTGTGGGGTAGG	ref_1610_negative	74	89	69	56	86	60	94	50	95	61
CTTACTTCAGGTTTAT	ref_1610_negative	10	20	15	9	22	9	25	18	22	7
AAAGGTCAGCCCTAGG	ref_1610_negative	103	141	113	103	136	98	175	79	145	103
GGGGGTGACGCGATGG	ref_1610_negative	37	54	72	49	55	48	65	41	62	33
CGACAGGCTTATTGGA	ref_1610_negative	0	5	6	6	6	3	5	3	2	1
CGCTGAGACCATCTGC	ref_1610_negative	67	106	77	73	97	80	88	61	96	63
ACTTTTTCTGGGATTC	ref_1610_negative	14	30	15	24	30	23	36	20	32	17
TGTGAGTTAAGTGTCT	ref_1610_negative	26	45	38	44	54	23	65	21	46	29
GCGATATTTGCCTGAT	ref_1610_negative	17	37	21	23	38	23	41	25	38	15
CTTACCTCTCTCCACA	ref_1610_negative	9	70	6	4	101	4	95	4	79	2
TCTATTGCTCCGATCC	ref_1610_negative	34	71	44	44	50	46	59	30	73	39
CCCGCTGCTGATTTGA	ref_1610_negative	26	51	33	37	33	25	46	21	53	16
TCCGGGCCTAAGGGAA	ref_1610_negative	10	18	10	5	16	7	18	11	16	5
AGAGGGCTTGGAACGA	ref_1610_negative	76	127	94	82	117	94	117	81	147	80
TCCACTCTCACTGTCG	ref_1610_negative	51	98	70	72	120	57	74	60	103	61
GCTTCGCCTGGGTTCG	ref_1610_negative	3	8	2	4	7	2	7	2	7	2
GCAACAATCATCGTGG	ref_1610_negative	0	0	0	0	0	0	0	0	0	0
GTGACCGATAGATTGA	ref_1610_negative	121	175	143	140	198	132	180	118	203	120
ATCTATGGCTACCCGG	ref_1610_negative	23	38	26	28	40	15	31	19	40	14
ACGATTTTACTGTCGC	ref_1610_negative	0	0	0	0	0	0	0	0	0	0
GTGTATCTTGTTAACA	ref_1610_negative	0	0	0	0	0	0	0	0	0	0
GCCCTGTTGGTCATTG	ref_1610_negative	32	90	53	49	74	40	68	38	70	30
CTATGTCGTGTTGGTG	ref_1610_negative	2	9	5	5	6	10	10	3	7	5
TGCGTTTTAGTCTCAT	ref_1610_negative	13	29	24	14	21	10	22	5	19	14
GCTCAAACGCTCCTTA	ref_1610_negative	5	18	21	7	16	7	22	11	18	13
CGCGTAAACGGCTGTT	ref_1610_negative	112	155	117	102	169	102	172	103	199	81
ATGTCCCGATTTCAAA	ref_1610_negative	26	38	41	25	36	32	52	29	49	24
GTCAGGGAGTTATCTG	ref_1610_negative	39	45	28	31	44	28	58	42	39	27
ACCTTGCCAGGCGCTT	ref_1610_negative	61	77	61	79	69	43	68	39	76	37
GCCACAGCCTTGCGCC	ref_1610_negative	2	12	10	6	16	5	14	11	20	7
TGCCACAAGGCGGGCG	ref_1610_negative	48	79	49	43	91	52	106	43	110	36
TACTGTTATGTGCGGC	ref_1610_negative	12	28	11	19	24	8	21	9	14	7
CCATGTTCCTATTACT	ref_1610_negative	7	6	1	4	6	8	8	6	9	5
TGAATGCTTTAGCGGA	ref_1610_negative	38	64	78	58	73	52	67	39	97	49
TCGACCTTGGTATTTA	ref_1610_negative	31	53	46	39	57	44	67	36	63	25
TTAATACTACGCTGGT	ref_5746_new	20	38	40	24	34	23	39	24	31	29
CCCAGAGATGCAGTTA	ref_5746_new	0	1	6	3	2	3	4	6	9	0
ACATATGAGCTTACTC	ref_5746_new	10	14	12	10	12	14	17	10	10	8
ACACTCGGATTACCTT	ref_5746_new	21	62	47	32	68	27	66	29	84	25
TTAAGCGTATGCGGCT	ref_5746_new	5	11	11	11	18	11	14	14	13	12
ACTCGTGAAAACCTTG	ref_5746_new	15	28	20	18	37	11	30	17	43	11
ATAGTTCGGCCACCTT	ref_5746_new	18	17	19	13	24	12	23	14	29	8
GGTAGATTCCGTCTCT	ref_5746_new	8	14	8	8	9	6	10	10	19	7
TCGATTGTTAGGTGAA	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GGGAACGCATATATGT	ref_5746_new	25	18	28	20	40	13	31	19	36	28
ACTGAACCAGTTGCTT	ref_5746_new	43	67	39	29	69	37	69	43	56	24
TGTTAGCCTTCTCAAG	ref_5746_new	0	0	0	0	0	0	0	0	0	0
CTCACTGATCCAATCT	ref_5746_new	28	36	29	31	37	30	39	29	61	29
TCCGGGCAGAATCGTA	ref_5746_new	5	4	7	5	5	4	7	1	5	3
TCACCGCCGGAGTGTG	ref_5746_new	18	14	14	11	16	7	15	14	13	6
GCTCTACCACCCCCTG	ref_5746_new	1	6	6	5	6	4	13	3	7	5
GTGCATCCTCGTAGGG	ref_5746_new	90	91	85	76	107	64	117	76	111	68
CACTTAGTTGGGTACC	ref_5746_new	0	0	0	0	0	0	0	0	0	0
TCGATTGTTAGGTGAT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GGGCATCGTTATTGGT	ref_5746_new	14	15	12	5	22	13	17	9	14	18
TGATGTGAAACCTTGG	ref_5746_new	24	43	35	30	40	29	30	23	46	28
TAATGTTGGTTGTTTG	ref_5746_new	8	12	19	14	26	12	14	13	26	10
GACGGAGGTAGTTCCC	ref_5746_new	8	13	9	7	15	1	18	5	12	6
TGTATTTCGGATCCTA	ref_5746_new	4	0	7	8	4	1	9	2	5	3
ACGGGAGGATATCAAA	ref_5746_new	7	37	18	20	21	15	32	10	23	15
GGTTAGCGTCTGGCTG	ref_5746_new	6	14	25	19	19	16	12	14	22	9
CGTCTGGACACCGATT	ref_5746_new	27	49	28	26	37	18	48	26	27	19
GCACTTTGTGATATTT	ref_5746_new	7	9	18	7	13	2	12	8	22	7
TTAGGGGGAATTAATC	ref_5746_new	20	18	16	16	19	10	18	14	16	18
ATCCTGTTTCCAGACA	ref_5746_new	21	23	20	17	28	21	31	24	20	18
CACTATACTTCTGTAA	ref_5746_new	11	11	11	5	9	13	8	10	12	9
GCCATCTGCCCTGAAT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GAATGCGGTTTACTCG	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GGGAGCCCACTGATTG	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GGTCCCAAGGTTCTGC	ref_5746_new	42	51	38	33	47	35	65	22	72	44
GAAAATGATTTCTCAG	ref_5746_new	106	125	124	120	124	129	124	104	136	108
TACTCCTGGTGTCCGT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GTTGGCCCGAGCGGAT	ref_5746_new	63	74	79	51	72	56	82	70	79	54
AGGCCCGTATCCATAT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
AGGGAACGTCACCAGA	ref_5746_new	0	0	0	0	0	0	0	0	0	0
TCTCCGTGAATCGTGC	ref_5746_new	0	0	0	0	0	0	0	0	0	0
CGTCTATTGGCCCTAG	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GATGGGGACCCTGGGG	ref_5746_new	31	53	42	35	44	47	48	31	57	31
CCATGCTCATCACCAG	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GCGAGGGTCCAATGGT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
TAGTGCAGCAATGAAT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
CCATACGAATCGTATG	ref_5746_new	0	0	0	0	0	0	0	0	0	0
CCACGTTACCGTAGCT	ref_5746_new	36	62	42	38	67	25	63	35	62	26
CTGCTTGCGATTCTGG	ref_5746_new	26	24	16	18	36	12	37	17	24	19
CTACCGCTTGAACGTA	ref_5746_new	0	0	0	0	0	0	0	0	0	0
CTGTATTTAGGTATAA	ref_5746_new	52	42	42	38	51	39	54	25	58	36
CTAGCAGTCTCTGGGA	ref_5746_new	44	77	48	47	91	41	70	35	91	38
TCAAGGCTGGAGTCTT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GGCACTGCGTTCAAAC	ref_5746_new	100	136	100	85	118	76	111	87	128	90
ATATACCTATAGGTAC	ref_5746_new	0	0	0	0	0	0	0	0	0	0
TCTTAGGTTAGTCGTA	ref_5746_new	9	17	16	9	29	15	19	14	13	18
GGCTGGATGTGCTCCG	ref_5746_new	13	23	22	3	14	13	19	12	12	16
TTCGGTCTTAGGCCTA	ref_5746_new	0	0	0	0	0	0	0	0	0	0
GTGGAAGGTTGAATCG	ref_5746_new	19	32	23	23	43	34	26	17	33	27
CTAAACAACAGATTTC	ref_5746_new	29	42	40	49	49	32	55	43	32	33
AGCGTGCCCACAATAT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
TGGTTACTTTCCCTCG	ref_5746_new	17	42	36	20	38	28	43	32	53	24
CCTACTTTTTCTCGCT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
AATCCTACATTGCGGC	ref_5746_new	59	55	72	53	84	37	62	60	71	47
ATTTCGGGGTAGTCTA	ref_5746_new	3	6	1	1	5	5	5	4	9	2
ATTTAGACTTTCGTAT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
TGTCTTTTTTTAACTT	ref_5746_new	6	10	1	6	9	7	7	10	6	6
CGGTATTTCAAGTTCC	ref_5746_new	27	47	44	26	34	33	41	33	51	34
AGCGGCACCTCGTCCG	ref_5746_new	50	57	76	55	72	36	67	54	73	52
GATCCAGAGGACGGTT	ref_5746_new	0	0	0	0	0	0	0	0	0	0
TGTTTTGTTCCAACCC	ref_5746_new	5	14	9	8	5	7	10	4	5	2
GCGAGGTACTTTTGAA	ref_5746_new	12	1	7	7	9	0	4	1	8	6
AACAACGTTTTCGGCA	ref_5746_new	54	77	76	43	71	58	70	54	55	50
ATACATATTCGTGTAC	ref_5746_new	0	0	0	0	0	0	0	0	0	0
ACTCTATTATTCCATA	ref_5746_new	20	45	41	35	27	21	33	26	36	24
GACGTGATCTACTCAT	ref_5746_new	24	66	39	40	39	28	59	35	53	31
GCTCTTATCGGTAGTG	ref_5746_new	38	46	22	22	30	29	46	34	50	25
TGCAGCTCCTAAGTAT	ref_3746_reverse	13	2	10	9	8	15	6	11	10	18
AATGGCTAGGAAAGTT	ref_3746_reverse	91	90	96	90	107	67	99	99	121	71
CTAAAATTTATGCCTC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTACTCTAACTGT	ref_3746_reverse	227	238	315	236	228	200	240	204	281	185
TTAGCTAAGGTCACTG	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATACGGCTGCCAAGAT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTGTGCCGTCTTG	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGCCGTGCAGGTA	ref_3746_reverse	10	11	9	11	13	6	6	9	13	8
TAATTTTTACGGCTTT	ref_3746_reverse	31	30	37	43	38	36	25	38	31	39
TAACACGTCGTGATCT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTAAAACGTTTGA	ref_3746_reverse	18	13	39	12	22	30	19	18	26	13
TCCCCCCGCCGCATCA	ref_3746_reverse	1	13	1	0	16	0	10	1	10	3
TGTCTTTCACTTGCGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GGCTAACTATCGACGT	ref_3746_reverse	18	10	10	14	14	14	11	10	15	11
GGGCTGGTGAAACCAT	ref_3746_reverse	235	245	271	203	257	207	275	202	268	203
GTGGGTTCTCACTATA	ref_3746_reverse	42	50	37	35	36	40	50	26	63	48
CAGAGACAACGGTTAA	ref_3746_reverse	88	87	101	97	97	104	72	66	90	85
CGTGTACCTGTTGTTC	ref_3746_reverse	10	9	16	9	10	6	14	7	11	4
ATACGTACCATCCCTT	ref_3746_reverse	17	39	22	12	30	4	15	9	34	15
GTGTGTATCTCCCTCT	ref_3746_reverse	1	6	8	5	7	5	9	3	11	5
GATCTACTTTAGGTCT	ref_3746_reverse	104	67	119	67	74	83	63	55	79	81
CAGTCTAAAATGTGAC	ref_3746_reverse	127	118	142	99	136	118	119	100	119	111
GCTTACCGGTCTGTTG	ref_3746_reverse	154	282	167	171	252	161	290	154	239	120
AAAAGCTCACCTTGAC	ref_3746_reverse	35	63	40	21	55	26	59	39	57	28
TCGCGTACTCCGGTAC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTAAACTTTCGCCTGA	ref_3746_reverse	102	115	128	108	117	110	127	88	140	99
TTCGCTGCCACCGAGC	ref_3746_reverse	39	35	48	41	46	45	44	32	58	30
CCGACCTTGTCGTCAA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGCTATGGATGTG	ref_3746_reverse	76	105	94	62	96	93	112	76	82	72
ACAAGATGGTGCAATG	ref_3746_reverse	8	16	15	14	11	11	14	13	10	11
TGGTTCACCTCTCTCT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GTTATCGGCTAAGTCT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTATTCAGTCATTACA	ref_3746_reverse	27	37	34	26	24	25	33	18	46	28
ATTTCACCTCTTCTTG	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CGACAACGAGTATTCC	ref_3746_reverse	33	34	28	34	26	31	41	24	32	31
TCAGCTGGTATCAAAC	ref_3746_reverse	21	34	25	29	23	24	30	17	34	8
TGTGATTATGCCAGTG	alt_3746_reverse	18	19	23	25	23	18	25	22	22	22
GACCTGAATCCGCTGC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTTACGTACGAGCATT	ref_3746_reverse	51	61	56	39	57	37	97	37	67	38
GTTTCCTCATATCTCC	ref_3746_reverse	2	2	0	1	2	2	7	0	5	5
TTTGGATCAAACCAAA	ref_3746_reverse	22	21	19	17	32	24	17	26	19	23
GTCCATTCTGTCTGTA	ref_3746_reverse	88	74	102	78	88	69	93	70	93	80
AGCGTTTGTGATTGGA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTCCCTCGATTTG	ref_3746_reverse	1	2	2	4	1	2	7	2	3	2
CGCATACTTGGAACGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATTGATAGAACTTCCC	alt_3746_reverse	22	31	31	32	30	20	34	31	36	18
AACTTTTACGTTATGC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGGGACTCTAATT	ref_3746_reverse	14	18	30	25	12	17	21	21	17	16
GTCCCTTCGCATTGAT	alt_3746_reverse	22	39	34	24	40	17	26	20	26	11
CCATCCCTCTGTGGCA	ref_3746_reverse	15	14	21	8	19	17	11	7	14	18
TCCCAAGACTGGTTCA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CCATTAGGGACGGTGA	ref_3746_reverse	9	3	16	11	9	17	13	9	12	7
CCGATTAAGCTTATAG	ref_3746_reverse	41	84	53	51	72	32	77	36	72	40
TTTTCCAGGTGCCTCG	ref_3746_reverse	25	34	27	29	30	23	28	28	29	40
GTTTGTCGGGGACCCT	ref_3746_reverse	39	41	58	40	50	40	57	39	46	40
ATGCTGTGGGCCATCA	ref_3746_reverse	28	35	49	25	37	38	50	31	23	41
TCTATGGGAGTTCTTC	ref_3746_reverse	9	7	9	6	7	6	3	4	6	7
GCTTCGAGTCTTTGTC	ref_3746_reverse	32	19	25	19	33	25	28	22	36	27
TTTAATCCGGACATTC	ref_3746_reverse	80	48	75	80	46	82	59	78	42	58
GCGGATTTTTCTGACC	ref_3746_reverse	215	218	302	247	208	245	230	252	204	205
GACCACACTAGGCACA	ref_3746_reverse	19	27	21	23	27	21	31	24	45	22
ATGAATCACGCTTCCT	ref_3746_reverse	38	38	51	43	47	43	44	29	42	36
TCTCACTCGCTTCGCA	ref_3746_reverse	3	14	5	11	9	5	8	10	10	8
GGTTGCGGTGTCTTTA	ref_3746_reverse	42	47	66	41	54	46	64	40	55	50
TACCATCTTCACAGAG	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTACGCTTTATTATCA	ref_3746_reverse	17	12	23	15	19	24	37	16	25	16
TTAGGTTTCCCTGTAT	ref_3746_reverse	56	63	77	50	71	51	71	39	71	42
CTCTGAGTGCCCAACG	ref_3746_reverse	60	62	56	63	45	37	67	50	53	37
CGTGCAGTGAGTGTAT	ref_3746_reverse	35	35	30	27	45	35	43	20	59	24
GTCATCGCATGCTCGC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTCATTCTGCTCGATA	ref_3746_reverse	106	77	97	72	87	71	80	81	106	73
TTGGATCTTGATTGTC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTACTCCGAAGGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGATTAGGATGACAGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATGATCGAAAACGGAT	ref_3746_reverse	23	24	26	21	27	16	32	22	23	16
TAGGCGCAACTCTTTC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGCGATTTGTGAC	ref_3746_reverse	8	7	2	10	5	8	13	2	8	1
CCGCAACACACTTCAA	ref_3746_reverse	22	37	48	47	42	34	40	37	57	33
TTTAAGTTATGCTGTG	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCAGACTGGGTTA	ref_3746_reverse	22	16	31	23	31	18	27	20	21	24
GGACGCCTCCCTCCAA	ref_3746_reverse	23	21	26	19	32	21	27	22	20	20
GGTTTGACCTTTCGCT	ref_3746_reverse	8	5	9	5	10	5	11	4	5	6
TCGTGGTAAGTCTGGA	alt_3746_reverse	81	54	65	66	58	71	71	60	65	62
ACATGAGATTTGCCGT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
AATCGATTGTGGTTTG	ref_3746_reverse	6	11	9	5	7	13	9	8	15	8
GTAGACGGGATTCAGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTGTATCCTGCTC	ref_3746_reverse	47	37	46	34	38	36	39	24	45	34
GAAAGTTTTTTAATCT	ref_3746_reverse	64	92	114	87	86	99	86	83	111	67
TTAGGGATTGTATTGA	ref_3746_reverse	109	89	84	92	92	90	116	79	105	86
CGAGGGCCGGTCCTCA	ref_3746_reverse	18	21	18	10	18	13	18	13	14	14
CGCGGTGACAACTGCT	ref_3746_reverse	13	16	11	12	29	8	29	11	31	14
CATCGTGACGTGCCAT	ref_3746_reverse	19	37	29	24	26	28	33	25	27	32
CTGAGAGCTGGTTAAT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGTGCCTTGCTAT	ref_3746_reverse	15	34	34	14	30	18	24	13	23	14
TTACTTCGTAGGTCTA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GTCGACGGCATTTCGG	alt_3746_reverse	101	112	126	136	121	110	122	113	127	112
CATCCCATGCTTCGTG	ref_3746_reverse	10	18	12	8	8	12	9	7	20	8
TTTTTCGCATTTACTT	ref_3746_reverse	3	1	4	1	2	7	1	5	3	4
GTCTTAGGCTGGTTAA	ref_3746_reverse	45	45	66	40	53	43	58	55	63	51
TCGTTAAAATGCCCTT	ref_3746_reverse	49	24	43	31	38	22	37	24	38	31
GTTGAGTTCGGAAACC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTTCATACTCAGCGTA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGGTCTGTAAGTA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CATGCGGTAAACTGTC	ref_3746_reverse	10	16	17	12	8	19	16	8	13	4
CAATGGGTAGTTTCTT	ref_3746_reverse	113	119	125	115	107	92	134	112	120	92
CCCTAATTCGCGTTTC	ref_3746_reverse	17	24	14	15	29	3	20	12	26	10
CTCGGGATTGTTAGTC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TACTAATATCGGCTCA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGTACAACTCTCA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTAGCAATTTACG	ref_3746_reverse	20	72	28	17	67	18	73	23	84	19
ACCTCTTGTGTAGTTG	ref_3746_reverse	25	12	26	14	25	23	33	8	19	17
TTGGTCTTTTATTTGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCCGACCGGACAG	ref_3746_reverse	24	36	20	26	32	13	26	25	52	23
GTTCTGTCGGGGTCCT	ref_3746_reverse	15	8	19	23	6	10	17	7	5	6
GTTGCCTGAGTAGGAC	ref_3746_reverse	34	39	41	25	38	25	30	26	28	31
GTTTCGCGCTAGTCAT	ref_3746_reverse	16	33	17	18	30	6	34	13	39	8
GATTAGAGTGCAGGTT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TCACCAACGTCACAAG	ref_3746_reverse	26	30	38	29	35	43	29	19	32	29
AGAGTCATTTCAAGAT	ref_3746_reverse	10	7	8	6	3	2	4	5	5	7
TAATTATCCGTTAATT	ref_3746_reverse	203	159	206	200	158	162	177	162	193	169
TAGGTTGATTAGGTTC	ref_3746_reverse	12	7	9	11	9	6	11	9	18	6
AGGCAGCTCGAGTAAT	ref_3746_reverse	24	30	40	32	48	20	46	27	48	28
GGAGCGCGCTTGGATC	ref_3746_reverse	1	1	0	0	3	0	2	1	0	1
TCCTCAGGACTGTTGG	ref_3746_reverse	31	54	32	23	43	29	44	30	50	34
ACGTGTCGGTTACGTT	ref_3746_reverse	7	3	6	5	9	6	10	2	2	5
CATTGGGTGATGATGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GGATGCCAGTTAGACA	ref_3746_reverse	27	27	40	35	45	27	42	30	47	26
CCCGTATTATTTTAGC	ref_3746_reverse	35	58	51	48	71	40	63	42	64	42
TAATTTTCCCGACGTT	ref_3746_reverse	12	17	19	16	14	10	14	25	15	11
ACTGGACTCCCTGATT	ref_3746_reverse	23	25	17	17	24	13	17	13	20	19
GTTGCAATCCATTCGG	ref_3746_reverse	20	24	26	20	26	14	22	18	22	16
GAATTCAAGTTTTAGA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGTGGTCTGTGGC	ref_3746_reverse	57	67	72	75	66	41	65	59	73	56
ACCCTAGGTAACCGAC	ref_3746_reverse	7	11	4	5	7	7	5	5	12	6
AAAGCCCGTCTTGATG	ref_3746_reverse	25	26	21	20	29	6	24	16	44	24
TTACCTTAACCAGCGC	alt_3746_reverse	0	0	0	3	1	0	1	1	1	2
AGGCATTCTAGAATAA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TCCTAACCTTCATGCT	ref_3746_reverse	28	29	27	17	41	30	34	24	36	27
AGGTAACTAAGAGACT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CAGTGAGGTTTTTTCA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTACATCGGTCTACTT	ref_3746_reverse	87	65	77	70	81	66	74	77	94	55
CGCGCAAAATAATATG	ref_3746_reverse	1	1	11	6	14	3	5	3	7	7
TAGTTGAAGGGATCAA	ref_3746_reverse	10	6	8	8	13	12	19	8	7	6
TTTCAATAGTACGTGT	ref_3746_reverse	8	12	7	4	15	12	7	4	6	7
TGGGCTACCCATTCTA	ref_3746_reverse	32	52	42	37	32	29	34	30	39	26
AACGCCCATTTGTAAG	ref_3746_reverse	31	50	50	40	41	31	37	40	32	25
GTAGGCTTATATAATG	ref_3746_reverse	27	39	31	43	37	34	38	30	37	30
CTTCCGCATCAACTGT	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GCTACGACTTCAGTTT	ref_3746_reverse	6	12	6	1	7	1	6	6	2	3
AGAGATACGACTGTGA	ref_3746_reverse	38	32	43	30	28	39	30	34	29	43
GGCCATAGAAACAACC	ref_3746_reverse	124	121	175	128	167	148	185	133	158	135
GCCGACCCGCTTTTCG	ref_3746_reverse	26	24	51	34	41	33	46	32	28	35
CGGGTTAGAGGCCCTC	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
GCTGTAGATCCACTAG	ref_3746_reverse	96	100	144	113	97	87	112	78	109	75
CTTGCTATATCGGCTT	ref_3746_reverse	40	33	46	26	40	29	44	34	35	38
CGTGTCTTGATGCCAG	ref_3746_reverse	37	38	46	44	45	32	42	41	30	32
AAGTATTAGTACTATA	ref_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTCGATGCGGTCAATA	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGAAACGCTTCA	ref_2134_fdr	60	38	52	56	34	39	34	50	47	39
TTCGTATGGATCCAAA	ref_2134_fdr	21	8	17	18	17	30	20	9	21	23
ACTTACTTTAGGCTTA	ref_2134_fdr	6	5	9	4	7	9	8	7	4	5
ACTTTCATACCACTTC	ref_2134_fdr	29	36	41	40	36	33	36	29	27	36
ACCTTCTACCATCCTG	ref_2134_fdr	15	28	25	17	23	16	19	18	25	13
CATGGTGAAGCTTCCT	ref_2134_fdr	262	177	285	243	183	264	216	217	231	221
TCATATTGGCAATTCT	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGCTACGATTTTC	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCCTCAATTGCCT	ref_2134_fdr	70	46	97	77	48	61	57	70	42	61
GATTTCCAACTCTATA	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TGCATAGGTAAGATGT	ref_2134_fdr	9	6	9	9	23	12	6	14	11	10
CTCTAGCAAAATTTGT	ref_2134_fdr	20	31	31	25	21	29	35	20	17	31
TATTCATTTTGGATCT	ref_2134_fdr	18	10	8	12	9	14	10	11	12	17
CCGTTGCATGCAGTCC	ref_2134_fdr	7	5	4	5	4	6	3	1	4	1
TTCTCAGCACTGTCCT	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCCGGTGACACC	ref_2134_fdr	57	69	64	81	66	55	74	59	73	48
CCGTGGAATCGATTCT	ref_2134_fdr	4	5	4	10	15	6	11	13	7	2
CCCAGCTCAAACCGGC	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTAAGTGGTAGTA	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
GAGTAAATGTATGCAC	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
ATTTACTTGTACACAC	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
ATGATCTGCAGCGAGC	ref_2134_fdr	10	17	10	14	7	14	7	6	10	15
TCCTGGGTGGCTATGC	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGTTCCTTTTTCG	ref_2134_fdr	114	81	118	155	93	112	106	118	124	89
GACAAGAAATCCCCGA	ref_2134_fdr	26	33	33	32	32	25	30	34	35	35
TGAGTGTATCCGCTCT	ref_2134_fdr	15	19	21	16	24	16	13	16	19	22
TTTGAACGAAATTGGT	ref_2134_fdr	37	32	40	37	27	25	23	37	30	27
CCATCGGACCTGTTCG	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGTCACGCCCTTA	ref_2134_fdr	18	14	14	11	21	9	21	15	14	15
GGGAGTTAATTCACGT	ref_2134_fdr	27	19	31	16	18	19	17	10	14	14
TATGTTTTAATTTCCA	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
CCACTGACATAGCTGT	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTATAAACGTGGA	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCTTTTAATGCAC	ref_2134_fdr	31	37	36	33	36	26	32	42	38	28
TCCTGCCGCCACCGCA	ref_2134_fdr	15	17	24	21	14	17	22	15	14	13
TTATAAATAGGCTTGA	ref_2134_fdr	20	8	27	17	7	13	26	17	10	17
GGCCTGTCCAGTTTCA	ref_2134_fdr	3	0	3	7	6	2	6	3	0	7
TTGCGCTTGGCTGAAA	ref_2134_fdr	67	64	81	71	64	46	64	81	54	53
GGTGTATCCAAAAGGT	ref_2134_fdr	2	3	4	3	7	2	1	2	0	1
TTTACAGAGCACTTCC	ref_2134_fdr	81	80	117	101	81	79	105	87	77	87
CCGATTGATTCTTTTA	ref_2134_fdr	15	12	22	15	12	11	10	10	10	8
TTCTTGAGTTGGTTCT	ref_2134_fdr	38	47	42	42	30	28	45	45	37	36
ACCCGGGGCGCCCATG	ref_2134_fdr	82	63	74	80	67	62	64	70	78	63
CCGTTATGGTCCCGGG	ref_2134_fdr	5	11	6	12	5	9	6	11	6	9
TCGCGTGTATGGCTTA	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TCATATCGCACAACGG	ref_2134_fdr	62	48	67	91	76	57	72	74	69	54
CAACATCGCGGGCTGC	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
CGACTTAAGGACAGGG	ref_2134_fdr	3	6	7	3	4	7	2	4	9	7
GGACCCTCAGTTGCTC	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTCTGGTCGCCGC	ref_2134_fdr	77	56	97	83	54	79	60	81	58	84
GGCTCAAACCAAGATA	ref_2134_fdr	16	14	25	12	14	22	23	14	11	22
GCTTTATTGCTACGGA	ref_2134_fdr	0	0	0	0	0	0	0	0	0	0
TCCAACACATAACCAA	ref_2134_fdr	37	26	46	40	34	22	25	24	28	22
CGTAACATTACTATCT	ref_5486_upstream	3	8	3	1	1	4	2	4	1	1
TGCTCCTCCATTTGGC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ATACCTAAATGTCCCA	ref_5486_upstream	19	27	18	16	22	25	39	17	28	17
TGAATTCCTATCAAAT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GAGATGGTAGCGCACG	ref_5486_upstream	17	23	19	17	30	15	37	16	23	14
AGCCACTCTAACTGTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAACTACCCTTGA	ref_5486_upstream	9	26	11	16	13	14	19	7	31	2
CTTGGTTTATTGTTTC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CTACTCTTTGGCCCGA	ref_5486_upstream	3	4	7	8	10	5	10	5	10	8
GCCTCACGGCAGTTTG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGGTGTTCTCAT	ref_5486_upstream	30	46	17	30	54	28	52	17	76	30
ACCCACCCTCTAGAAC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCACGAGATCCTG	ref_5486_upstream	34	35	28	29	45	29	35	29	38	31
CCTCGTCCAGGGGGTC	ref_5486_upstream	16	36	7	7	34	7	47	12	30	11
GCCTCGGCCGGCATGG	ref_5486_upstream	30	52	42	26	49	35	40	34	47	30
GCAAGAAAGGACTACA	ref_5486_upstream	27	24	48	33	20	38	31	25	36	29
TTCCTGATTTTACTTC	ref_5486_upstream	19	19	18	22	19	6	16	17	10	19
AAACCTTTCCATTTAG	ref_5486_upstream	20	32	13	13	36	17	22	13	24	10
TTAAGCGTTCCTGCGT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CCCGGCTAGCCCCTGG	ref_5486_upstream	2	3	2	0	0	0	2	0	1	0
ACTATCTGTTTAAATA	ref_5486_upstream	21	45	18	25	38	15	31	28	38	30
ACCGAACTAGAAGTCA	ref_5486_upstream	16	17	16	9	14	8	10	5	19	13
CTAAGATCCGTTGTTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ACTAAGGGGGCATCTT	ref_5486_upstream	12	19	21	18	21	10	23	12	20	16
CTGGGAACTCCCCGAC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGTGAATTGTCGG	ref_5486_upstream	32	39	22	28	64	28	51	22	65	18
TTCGGAACTAAAGAGT	ref_5486_upstream	5	3	3	3	7	3	11	2	3	6
CAATGTTACTAGCATT	ref_5486_upstream	11	29	11	11	17	7	27	10	19	9
AGTCTTCTCCGAACTC	ref_5486_upstream	13	30	19	10	29	17	31	6	28	18
GTCCGAGGAATTTCCT	ref_5486_upstream	13	34	18	13	35	17	30	22	28	15
GTTAAGCTATTTTCCG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GAGATCGCATGTTTCC	ref_5486_upstream	9	12	8	3	12	7	5	7	7	6
TGGAGAGCCCGTCCGA	ref_5486_upstream	72	78	98	60	97	59	103	54	122	70
GAAACAGGTCTTACTT	ref_5486_upstream	23	17	17	12	31	20	19	17	15	17
CGCCAAGCTTACCACC	ref_5486_upstream	12	53	23	7	45	18	53	16	46	12
TGACTTCTCCGAATAG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCCATCAAGTATA	ref_5486_upstream	13	23	13	21	22	12	38	15	26	6
GGCCAGCTCTGCCATC	ref_5486_upstream	4	5	3	9	10	3	4	9	6	1
TGATCCGTCCTGGTCT	ref_5486_upstream	33	57	37	40	56	31	47	34	61	27
TCGCGCTAGTGCATTC	ref_5486_upstream	10	18	6	13	11	5	15	7	21	5
AGAGCTTGGTCCGGTC	ref_5486_upstream	2	1	3	2	1	2	0	2	5	4
GCAAACTTCGGATCCC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTTACAGGTGTAT	ref_5486_upstream	25	54	36	29	64	26	36	12	56	23
TCTAATCTCTAAGTCA	ref_5486_upstream	15	41	28	16	29	12	33	17	37	19
CACATCGTTCCTACTC	ref_5486_upstream	1	7	4	3	3	6	8	4	4	4
TGCTCCGCGCGAGACC	ref_5486_upstream	140	237	171	130	247	156	242	129	238	134
ACAGTGGTCGTTCATT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTGAATCTCGAAC	ref_5486_upstream	1	6	5	5	10	4	6	4	6	6
CCACGATCGCGGACAA	ref_5486_upstream	3	8	10	4	9	8	3	6	11	1
GCGGGTCTGTCCCCTA	ref_5486_upstream	14	14	5	6	15	7	19	9	14	9
GACATCCGTGTTCTGA	ref_5486_upstream	78	117	81	58	121	69	131	55	109	78
GTCTCGCCTAGAATTC	ref_5486_upstream	17	38	25	8	30	14	25	22	26	24
TTCGCTAATGAAACTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGCGCCTGACCCT	ref_5486_upstream	16	25	14	15	26	11	17	8	20	13
GCAGCTATTGGTGGCT	ref_5486_upstream	38	64	48	43	59	41	76	33	81	29
TTCACTTACTATATCC	ref_5486_upstream	12	21	17	20	30	9	24	15	17	14
GAGCTAAAGATTCTGT	ref_5486_upstream	59	92	100	56	85	69	84	64	102	57
TTGTATGCTATCATTT	ref_5486_upstream	4	4	2	0	4	2	3	3	2	7
CTTATGTTGCGTGGCT	ref_5486_upstream	9	25	9	8	14	11	21	11	21	10
CCTTCGAATATCTTAC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
AGGATCGTATTCAACC	ref_5486_upstream	25	34	21	18	33	16	36	16	31	20
GGCAATTTGCCTCAAT	ref_5486_upstream	0	2	1	1	0	1	0	1	0	1
CCGGCTTTGTTTGCTA	ref_5486_upstream	13	21	21	12	31	10	25	9	24	10
CCTCTTACCGAGGTCT	ref_5486_upstream	15	16	13	6	11	16	12	10	14	6
ACTGTTAGTCAATGGT	ref_5486_upstream	3	7	10	4	12	10	7	7	5	4
CTATCTAGGAACATTC	ref_5486_upstream	53	75	51	62	109	58	96	55	73	56
CCGATAGCTAAATTAG	ref_5486_upstream	23	36	27	27	57	19	52	31	68	21
TTTATCGTACGGCCAA	ref_5486_upstream	73	104	78	59	86	70	93	60	86	57
GATAGTTGAGTCTCAT	ref_5486_upstream	7	27	8	3	6	13	12	8	9	6
TATCTGCGTAGTGATT	ref_5486_upstream	4	13	3	3	10	7	9	8	11	6
TAAAGGGGTCTGGCGT	ref_5486_upstream	8	12	12	12	18	9	7	6	15	4
GTCGTCAGGCTACCCG	ref_5486_upstream	6	9	5	3	16	4	13	2	12	5
TTACGCTAGGAGTGTG	ref_5486_upstream	4	3	4	2	2	1	6	4	4	4
TCACTTTATCAGTTAT	ref_5486_upstream	16	10	9	5	22	9	10	8	8	9
CAACACAAGAGTCTTA	ref_5486_upstream	1	2	1	1	1	0	1	0	1	0
TTTTGATTTAAGAACT	ref_5486_upstream	28	44	26	40	61	19	60	20	54	27
GAGCCCAGGCAAAGGC	ref_5486_upstream	13	12	13	14	16	14	17	19	25	5
CGGAAGAAAGACATTG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCGTTCATGGCAT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ATAATTATTATTTCTG	ref_5486_upstream	5	10	4	8	12	2	17	4	4	5
TTTACCCGGGCGTTAA	ref_5486_upstream	11	6	11	13	16	11	15	9	23	5
TATGTTAGGGTGCAAC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCTTGGTTTGCTT	ref_5486_upstream	16	13	16	7	24	9	19	7	12	10
GTATTTGTTGTGCTGG	ref_5486_upstream	0	1	4	3	3	1	0	2	0	4
GTAGTTCTAAGGGGGT	ref_5486_upstream	30	75	59	49	83	38	69	44	74	45
CTGCGAACTAATCCCC	ref_5486_upstream	1	5	2	1	1	1	4	0	3	1
GCGTTTGTTTGTGTCT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GTGATCCGTTAGTCGT	ref_5486_upstream	45	67	54	49	75	38	79	48	77	46
CTCCCCGCCGAGGATT	ref_5486_upstream	1	26	1	2	22	0	13	0	12	2
CCAGCTTACTGTGGCG	ref_5486_upstream	11	56	32	21	52	11	48	23	51	21
ATCTCTTTTATCGCAA	ref_5486_upstream	13	23	16	13	24	17	27	7	17	9
ATCTTACTGCTCACTG	ref_5486_upstream	33	44	30	31	45	23	43	35	46	27
CAAAATACAAGAATCA	ref_5486_upstream	24	39	20	32	33	21	35	22	44	23
ATCCAAAGACGTGGCG	ref_5486_upstream	148	230	157	152	256	125	244	143	213	129
TTGTCCTCCATGCGTG	ref_5486_upstream	30	42	33	25	46	30	42	28	50	31
GTTCAAGGTCAATTGC	ref_5486_upstream	11	15	17	13	15	9	19	9	26	9
TTTTTACATGAGCGTA	ref_5486_upstream	28	60	48	30	54	33	58	36	64	35
GTTGCGGTCGTAGCGG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTTGGGATGACGA	ref_5486_upstream	4	16	12	14	9	7	6	12	17	6
ACAGCTTCTAGCTTGC	ref_5486_upstream	13	9	10	11	22	4	18	16	16	7
GCTAGGCTGACATTTG	ref_5486_upstream	2	3	3	4	5	2	3	1	6	2
GGTTTCTTTTAACGTG	ref_5486_upstream	0	0	0	0	0	0	0	0	2	0
CTGGCTCATGACCCTA	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTACTATCCACA	ref_5486_upstream	11	22	14	12	21	14	23	20	21	11
TAACGGCCTCTCTACT	ref_5486_upstream	9	7	7	5	7	2	11	4	9	5
CTGTTGCCCTTAGGTT	ref_5486_upstream	3	6	5	4	5	4	13	4	12	3
GAAGACTTGATGGTTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGCTTTCTTAAAG	ref_5486_upstream	40	67	55	55	96	53	95	48	89	59
TCCGGTGTGACAGCAA	ref_5486_upstream	24	53	28	16	37	22	43	20	30	18
GGTCCCGTACCATGAT	ref_5486_upstream	21	34	21	16	31	25	28	19	35	22
CTGGTTCGTTGGCATT	ref_5486_upstream	26	49	40	37	52	28	47	36	51	16
TACGAGTTAGTGTTTC	ref_5486_upstream	22	28	17	23	37	19	40	18	37	24
CATTTCACTCTGTGAG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTGGTCTATGTAC	ref_5486_upstream	12	33	25	10	22	12	14	12	12	6
ATTTTAAGAGCCGTCA	ref_5486_upstream	6	6	3	12	15	3	7	7	10	7
CCTCACACTAGGGTCT	ref_5486_upstream	25	34	45	27	27	25	34	27	35	29
AATCTAAGCATTGTCC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
AGTCGGTCAATTTCGG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GCATCAAACTTTACCT	ref_5486_upstream	0	1	0	0	0	0	0	2	0	1
GGTCAGGGTTCCTGTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCTGGCGCTCATT	ref_5486_upstream	35	43	37	25	67	36	75	41	59	40
CTCCCGGAAAGGACTT	ref_5486_upstream	7	7	6	6	4	2	13	4	6	5
CATAAGGAATGTCAAT	ref_5486_upstream	17	25	32	23	45	22	38	17	27	19
CTTTCGTTTGCAATAC	ref_5486_upstream	2	10	5	3	5	3	10	5	4	4
TGCCATCAACTCCTGT	ref_5486_upstream	3	9	4	3	12	5	7	5	5	6
CTTTAAGACTCAGTGC	ref_5486_upstream	1	0	3	8	5	3	3	3	3	4
TGCCCAATAAGTGTAT	ref_5486_upstream	8	38	17	21	23	20	26	10	44	12
CACGCGGGTCCACTGG	ref_5486_upstream	67	132	83	58	114	73	98	61	139	72
CTCGCCCCCTGCCAAT	ref_5486_upstream	29	37	35	23	42	30	59	24	30	13
GACTTTTACTTGCGCC	ref_5486_upstream	20	21	28	22	26	16	41	19	45	13
ACCGCAGCGTGGGGAC	ref_5486_upstream	3	8	8	10	7	9	10	7	8	3
AGTCTCCAGGCTCTTA	ref_5486_upstream	10	23	11	7	16	9	22	4	16	12
TGTATATTTCTCCGCT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CACTCCCAATTTCTAG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CACGTTAGCTTAAGGG	ref_5486_upstream	40	64	65	40	58	39	74	50	73	49
CAATTGGAACTCCTAT	ref_5486_upstream	5	12	8	5	11	6	14	6	10	4
TCAAAACTGACTCTTG	ref_5486_upstream	16	17	11	28	19	17	17	16	25	8
GAGTTTATGCAAGCAA	ref_5486_upstream	2	10	8	5	3	5	12	3	8	3
CGTCTGTATTTGAACC	ref_5486_upstream	7	13	8	13	14	3	14	8	22	4
GTTGACGCGAGCCCCG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TGTAAGTCACGCATTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCGATCCGAACTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCAGATTTTTGCG	ref_5486_upstream	6	5	3	1	7	3	4	6	7	4
TACGCATAGAGAATTA	ref_5486_upstream	53	91	61	57	78	70	87	52	97	63
CTTGATGAATCTTGTG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTTCCCGTTTGAC	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTAAATGCTTCCC	ref_5486_upstream	35	33	40	17	28	24	27	29	53	15
GTTGTCAATCCTTCTA	ref_5486_upstream	6	3	3	0	4	14	10	4	4	9
TCACTATTAGGTTGCC	ref_5486_upstream	60	54	44	33	47	33	57	33	65	40
CTAGAAACAAAGGAAT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCTGGAATTCGTA	ref_5486_upstream	41	66	60	27	65	42	53	37	65	29
AGGTCATCTATCAAAT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TATCTTTCACTTCCGG	ref_5486_upstream	30	46	48	51	64	38	50	41	61	42
ACGTGTCTGTTAGTGC	ref_5486_upstream	27	61	49	30	69	30	56	41	62	39
ATCATAGTCAGTCCAT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GCATGGCTATCTGGTT	ref_5486_upstream	7	6	0	6	10	3	7	11	12	2
TGCTTTATAGATCTCT	ref_5486_upstream	2	4	2	4	0	4	1	1	1	0
ACATACTTTGTCCAAC	ref_5486_upstream	30	33	25	23	41	16	41	27	36	20
TGCTACCTTCTCACTC	ref_5486_upstream	3	5	6	5	12	7	5	5	13	4
GTGATCTCTTGAAAGC	ref_5486_upstream	0	0	0	0	1	0	0	0	0	1
GCGGGTCTTTAAACGG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ATATGTGTGACCTCGC	ref_5486_upstream	49	95	61	65	97	59	70	43	92	48
AACTGGGCATGCGTCT	ref_5486_upstream	9	27	18	15	20	13	28	16	22	7
ATATCCTTTCCAAAAT	ref_5486_upstream	15	14	17	10	20	10	13	11	12	13
TCCACATCAGTTTTCT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGACCTGTTGATT	ref_5486_upstream	6	8	6	7	15	8	9	7	10	5
CGTCGGTTTTTTCTCG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCATCGAGAGTTA	ref_5486_upstream	7	9	4	6	3	7	6	1	8	8
GATGCGCACGGAGGCG	ref_5486_upstream	7	11	17	7	11	14	11	4	17	7
CGCAAGCTGGCGCTAC	ref_5486_upstream	24	30	24	28	27	31	22	15	35	9
GATTCATTCTGCCCCC	ref_5486_upstream	14	15	12	10	9	12	24	11	17	5
TGTCCGAGACCACGAC	ref_5486_upstream	8	13	8	3	10	3	12	7	9	9
GCTGCTTTTGGTTAAG	ref_5486_upstream	27	37	28	22	37	37	33	30	55	20
TCGGCTCGAACTCCAT	ref_5486_upstream	6	16	12	14	14	16	21	8	16	7
TTATATGTCTTAACTT	ref_5486_upstream	5	3	10	4	4	2	5	13	14	3
TTGGCAACGATCGCTT	ref_5486_upstream	12	31	27	18	24	17	24	16	36	16
GACTGGATCTCTGGCG	ref_5486_upstream	24	50	23	33	28	11	37	21	42	21
AATTATGCTTGTTATT	ref_5486_upstream	4	9	6	11	8	7	15	7	12	10
CGCTGGACTTTGAGTC	ref_5486_upstream	3	8	6	4	8	11	8	4	4	5
TGGGATGTCTCCCTAG	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TGATGTCGACGATTAG	ref_5486_upstream	2	7	4	2	2	3	4	6	12	7
CTCTGACCTATATTAT	ref_5486_upstream	2	2	1	4	1	5	0	2	2	1
TGTTTATGCCTAGTTT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTACCCTTCTGGG	ref_5486_upstream	1	2	1	2	2	0	1	0	3	2
ACTGGGAGTCCACGCA	ref_5486_upstream	12	17	20	15	28	11	16	7	26	12
CACTTTAATACGCGCT	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
CTATTGGCGAGACAAT	ref_5486_upstream	3	3	1	8	4	0	8	4	3	2
GTGGTTTATCGCATCA	ref_5486_upstream	0	0	0	0	0	0	0	0	0	0
ACCAATTGCCGGACCT	ref_5486_upstream	15	21	27	19	33	18	23	22	39	20
TTAAGCAGTTGTCTGG	ref_5486_upstream	9	27	14	14	19	17	22	13	26	11
CGGTTAAGGCCCGTGT	ref_5486_upstream	20	29	28	25	37	17	32	17	38	21
CTAACCATGTTGTTCG	ref_5486_upstream	65	141	95	73	155	94	159	56	162	54
ACCCAAAGACGTGGCG	ref_5486_upstream	0	0	0	0	0	0	1	0	1	0
GGTGGGGTAGACAGGT	ref_5486_upstream	4	6	6	2	9	1	5	3	5	2
GCGTAATAGAAGTAAG	alt_6115_new	3	2	1	7	18	9	4	8	15	5
TCACTCGTCTTACGGT	alt_6115_new	12	21	20	12	26	7	21	5	34	9
GAACGGGCATTTCTCC	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TTAGCAACCTCGTGCC	alt_6115_new	61	91	81	59	82	59	104	51	89	64
ATCACAGTCCCTAGCT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TGATACCGTTTTTCAA	alt_6115_new	32	50	44	52	41	39	51	43	56	42
AGAGTCACAGTCCCAT	alt_6115_new	14	19	13	12	20	15	13	7	11	15
CACTGCACGAATTACA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
CACACTACTCCAACTT	alt_6115_new	14	56	20	13	65	13	52	20	46	15
ATTCGCCGGCTTCAGT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
GGTTGTAGATTCCAGA	alt_6115_new	18	16	25	16	38	19	35	18	25	13
CGTTTTTCTCGATTCA	alt_6115_new	24	37	25	23	49	28	39	24	44	13
TACTAACATAGGAAAA	alt_6115_new	18	30	28	19	21	14	28	27	28	21
AATAATAAGCAAGCTG	alt_6115_new	9	17	8	9	12	10	11	7	15	9
ACCATGGGCCGCAACA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TTGGTTCTCTTCTCCA	alt_6115_new	127	129	128	105	157	137	150	115	175	97
AGAGGGACCTGTTAAG	alt_6115_new	90	110	84	90	152	81	116	83	112	70
CTATTCCTGCACCGGT	alt_6115_new	36	60	55	45	68	44	48	43	64	45
AGCTCGCGAATTAGAT	alt_6115_new	33	48	43	39	62	45	44	37	56	27
TGTGGATCCGTATTAA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TGTGAGGTGCGAGCCG	alt_6115_new	20	36	23	28	38	27	29	19	37	15
GTCCGAAAGGTGACAC	alt_6115_new	6	8	5	2	6	2	6	1	8	2
GCTTCAACATTCGAAC	alt_6115_new	11	30	33	19	28	22	15	19	19	25
GTTCCCGTGAACTCCA	alt_6115_new	159	178	144	128	194	121	165	123	194	115
AGTACGTTCCTCCGAC	alt_6115_new	0	0	0	0	0	0	0	0	0	0
GCAAGTGATTCTACGT	alt_6115_new	50	69	71	43	78	50	79	55	60	43
ACTACTATTTCAGGCT	alt_6115_new	28	50	43	38	46	38	39	23	56	25
AGATGGTGCCCAAATT	alt_6115_new	8	4	6	11	14	13	10	15	11	4
TTGAGGACAGATGTGT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TTTCCTAATACGTTCG	alt_6115_new	16	15	8	13	10	6	20	14	20	11
GTATATTCGACTCCAG	alt_6115_new	43	32	60	56	47	39	61	23	60	28
ATCAAGACGACATAAT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
GGAAACGCAACCGGTA	alt_6115_new	44	50	49	40	52	35	53	29	44	42
GATCGGATCGCGACGA	alt_6115_new	29	43	35	27	42	16	32	28	34	24
CCCCTTGGGCGCATGA	alt_6115_new	55	89	80	55	88	62	77	59	90	51
TATCTTCCTCGGAGCT	alt_6115_new	34	33	33	39	33	41	49	31	55	20
GGGGTATACCAACTGA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TCGCCCATCGTTCCTC	alt_6115_new	6	8	6	5	8	7	8	6	7	5
CCATCCAAGTCACTAC	alt_6115_new	19	16	19	21	19	8	17	16	31	14
TGTGCTTGTAGGCTCA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TGCTGCTATTGTTATT	alt_6115_new	90	112	117	93	104	102	134	82	132	59
AATGGAAGTCCGGGGG	alt_6115_new	18	20	22	20	25	15	26	14	37	22
AACAAAATGATCGAGC	alt_6115_new	12	13	18	15	18	11	15	15	23	11
GACCGTTAGCGGGCAG	alt_6115_new	0	0	0	0	0	0	0	0	0	0
AGATATGCACGATCAG	alt_6115_new	0	0	0	0	0	0	0	0	0	0
CTGCCCGATCTTGCTT	alt_6115_new	18	33	7	10	24	11	39	7	35	13
GCATAAGGCTTAGGCC	alt_6115_new	1	3	2	0	2	1	2	0	2	1
GCCCTTAATTTGGGTT	alt_6115_new	17	12	9	11	14	6	18	9	22	3
AGGGCGAACTTAGCAC	alt_6115_new	7	13	8	11	20	8	20	12	20	13
TCGTGCGTCTTTCACC	alt_6115_new	6	2	6	8	13	9	14	8	6	7
GGCAACATTGGGAATA	alt_6115_new	7	9	6	10	12	10	14	10	9	8
GGGTGACTTGCGTGCA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
CGTTTTCTTTTCTTCT	alt_6115_new	35	44	37	38	45	48	44	39	40	36
CGGCTCATCCCGTAAG	alt_6115_new	95	127	133	114	115	101	136	78	135	86
GTTCATCACTTCCATC	alt_6115_new	38	42	32	32	36	22	39	27	39	27
GTGAGCTCGTCTATGC	alt_6115_new	34	46	29	34	27	24	49	25	50	25
TGGACGTTTCAATTCA	alt_6115_new	36	37	50	39	40	35	49	39	50	32
GGTCTACCTGCGCTTT	alt_6115_new	12	53	14	15	51	21	48	8	54	16
CCATACACATTGGAAG	alt_6115_new	5	11	12	4	4	6	9	6	16	7
ATAGTCAACCTATCGG	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TGTTGAAACGGTGTCC	alt_6115_new	18	30	42	15	24	14	40	21	25	19
GGCTGCTATTACGACT	alt_6115_new	3	5	1	7	4	6	3	5	8	7
AAAAATCAATTCACTT	alt_6115_new	5	11	4	9	13	6	5	6	5	3
GATCCGTCTAGAACAG	alt_6115_new	0	0	0	0	0	0	0	0	0	0
ACGCATTGGCCCGGGA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
AATGTATTTTCCGCAA	alt_6115_new	27	34	28	33	33	28	35	30	47	31
CCCGAGTGACATTGAT	alt_6115_new	18	23	30	11	33	17	25	20	47	19
TTTGTAGGTGGGGCTT	alt_6115_new	16	19	12	17	18	10	26	8	24	19
GGTTAGGTTTGTAATG	alt_6115_new	5	2	3	9	3	4	4	5	6	1
TTCCAATCTTTGGCCG	alt_6115_new	8	17	17	21	12	12	9	7	26	12
AGCGCGGCACAACTAT	alt_6115_new	35	38	33	45	63	30	60	24	50	34
GTTTCGTGATGTGGTG	alt_6115_new	93	129	110	93	139	80	139	77	160	53
CAACGGGACAAATCCA	alt_6115_new	59	65	67	55	68	58	62	67	71	59
TGTTTGGTTAAAAATT	alt_6115_new	6	8	12	2	16	4	13	15	7	10
TAGTAGACACGTTTTT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
CAATATTTCAGGCCAC	alt_6115_new	35	44	49	32	53	44	45	22	49	35
TTGCTCCCTACTGCAC	alt_6115_new	78	105	96	81	149	63	109	70	127	74
CCCAGTGACCTCCGGC	alt_6115_new	11	14	12	5	13	10	7	11	10	7
GTGGAATTATGCAGTA	alt_6115_new	47	86	57	48	76	57	80	48	88	56
ACGCTCGACTCCGGTT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
GCTGTTCCTCGTACCT	alt_6115_new	24	36	22	26	40	25	48	23	46	25
CCCTCTCCGCCCTGGG	alt_6115_new	3	5	13	3	14	8	11	6	6	14
ATGTTGCCTGATATAT	alt_6115_new	25	30	25	29	33	31	37	22	30	19
GGGCACTCGAGCGGCG	alt_6115_new	40	54	51	42	51	34	64	42	62	45
AGTCTGCGATCTTTCT	alt_6115_new	8	13	17	11	17	7	14	16	11	10
TCTTGATCATTCATTT	alt_6115_new	8	10	17	6	18	16	19	12	13	14
CGTCCGGTGCGTGTTG	alt_6115_new	1	5	5	5	11	2	7	4	12	1
CGGTTTTTTCCCATGC	alt_6115_new	6	12	18	7	9	9	12	8	20	8
AGGATGTATATTCATT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TGTTTGATGAGGGTTT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
CCGTATTCTGACAAGC	alt_6115_new	31	47	45	43	42	23	46	37	33	29
TTACACGCTCAGAAGT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
GTTCAAGACGAGAGGT	alt_6115_new	17	26	24	25	36	19	37	21	42	24
TGGATTACGTCTATAA	alt_6115_new	7	13	13	6	20	5	11	8	19	6
AATCCCCCGAGGCAAA	alt_6115_new	18	20	16	10	25	13	19	9	22	12
TATAGTATTCGATGCA	alt_6115_new	51	63	46	33	77	32	60	46	80	40
TATACGACCTATATTC	alt_6115_new	46	65	55	54	70	49	70	50	90	37
CCCACCTGGCTGTATT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
GGTATGCATAATTGGG	alt_6115_new	23	54	27	23	43	22	53	31	68	24
TTTAACCATAGGTGTC	alt_6115_new	42	55	45	37	53	45	57	43	81	35
TACCATGTGTTAAGTA	alt_6115_new	22	41	32	13	38	23	37	13	43	23
TCCGGGGCTAATTGGA	alt_6115_new	46	55	38	39	51	38	59	42	59	26
ATTATTCGCTACAGCA	alt_6115_new	7	13	7	16	17	9	24	12	26	10
TAATATAACTATGAAT	alt_6115_new	3	4	12	4	11	6	5	4	7	10
GACCGTTTGCGGGCAG	alt_6115_new	420	600	498	436	617	398	620	356	656	377
TAATAGAGAAATACAC	alt_6115_new	19	16	7	11	7	6	21	6	16	6
CCCCGGTTGATTGTTT	alt_6115_new	14	20	26	25	30	18	25	19	37	12
AATATTCGGCATATGA	alt_6115_new	6	9	5	7	5	3	5	5	10	6
CATCAGCCATGGTTGT	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TCAGTCACACGCAGGT	alt_6115_new	15	24	32	19	34	21	21	17	35	17
ATTGGACACCCGTTCA	alt_6115_new	0	0	0	0	0	0	0	0	0	0
AAATTGTCGCCAGCCG	alt_6115_new	34	56	41	40	44	34	42	29	40	37
TCGGGAGAGCCACAGA	alt_6115_new	31	26	23	20	42	34	36	35	45	26
AAGCTATAAGTCTTTT	alt_6115_new	3	4	4	3	1	6	16	5	11	2
CACACCATGGAGGTTG	alt_6115_new	16	19	20	11	20	12	23	14	22	7
GAAAGCCTATATAATT	alt_6115_new	46	45	38	35	53	32	38	30	61	29
CGTTTTAAGGTTTACT	alt_6115_new	38	48	34	38	56	38	50	37	58	40
AAGTGTCAGTATGGAG	alt_6115_new	42	48	43	56	72	35	50	43	56	41
TATTTAGTGAGTCTAC	alt_6115_new	10	22	16	15	12	6	17	12	15	7
CCGGAGTCGGAAAAGG	alt_6115_new	61	49	54	52	65	52	65	49	61	43
GGAACCCAGTGTATAT	alt_6115_new	133	161	168	97	173	119	175	110	176	99
TTTAATGGCGGGAGTC	alt_6115_new	0	0	0	0	0	0	0	0	0	0
TTTTACATCCGCTTCC	alt_6115_new	19	33	24	16	28	18	24	12	28	19
ACGACGGACAATGTTG	alt_6115_new	0	0	1	0	2	1	6	1	3	1
ATCGTTGTTGGTAAGA	alt_6115_new	16	18	30	14	16	26	30	20	30	13
AGTTTACGCCTACTTG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGTATTGTGTATT	alt_3516_upstream	1	0	0	0	0	0	1	0	0	0
CTGGTGCGCAAATCGT	alt_3516_upstream	17	10	23	28	5	24	7	16	13	22
ATATACTGCAAGGATT	alt_3516_upstream	81	82	133	114	58	113	67	99	60	80
GCTATGCCCATATCTT	alt_3516_upstream	37	21	41	43	15	27	25	36	23	21
CTGCTCAATTGAGTGG	alt_3516_upstream	9	9	22	22	15	8	13	19	13	17
AGGCCTACCCGAGGCA	alt_3516_upstream	51	22	78	52	28	55	24	73	28	45
AGCAAGTGGGAAGAGA	alt_3516_upstream	31	20	33	30	20	32	15	29	8	25
TCTGGTACTGGCTTCT	alt_3516_upstream	51	27	72	75	26	51	26	50	37	43
CCTCAAGTTGCGTGCG	alt_3516_upstream	7	4	10	15	10	4	8	9	6	5
TTGAAAGCTGGACAAG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGGGAACGCGCCG	alt_3516_upstream	34	9	33	34	24	42	17	29	14	36
GGCCTAATCAGGCGGG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
ATGTACTTAGCTTGTT	alt_3516_upstream	84	56	126	89	59	89	56	102	58	88
CCTTCCGCCTTGGCTC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TGTTACTTTATTTTGT	alt_3516_upstream	420	144	500	470	144	370	161	419	181	408
ATCCATCCTCACTTAT	alt_3516_upstream	53	29	70	74	36	49	27	44	24	63
CATTCCTACCTAGTTA	alt_3516_upstream	30	9	28	23	13	22	13	28	20	19
ACAGTTTGTGAAATGG	alt_3516_upstream	147	51	160	143	71	120	65	114	59	111
CCGCGCTACGCGACGC	alt_3516_upstream	12	18	14	14	27	19	26	16	29	16
GCCCCCCGGCCAAGGT	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTCTTTCAACTC	alt_3516_upstream	101	33	113	105	54	105	48	85	72	65
CAATTTATGTGCTCGT	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGCTACGCTTTGT	alt_3516_upstream	356	168	418	376	167	331	179	277	170	326
GTTTCGTCCATTATAG	alt_3516_upstream	32	11	39	47	17	34	16	27	11	32
GTTTAGTGTTTTAGAT	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGGTTGTAGTATG	alt_3516_upstream	26	13	32	26	12	23	16	18	24	15
TTTTTCGTGTGGCCGC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAGGGCGAATGAC	alt_3516_upstream	27	22	52	31	11	44	13	34	13	42
CTATTAACAAGCCGAG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
GAACGTTCAGCCTTTC	alt_3516_upstream	135	88	188	166	80	158	79	154	73	145
TAAAGGCACCTTAACG	alt_3516_upstream	38	23	50	63	30	40	22	50	15	31
GAATCGCCTCTTCAAC	alt_3516_upstream	75	23	83	67	24	56	25	56	19	58
GCATACCTGTAGTGTC	alt_3516_upstream	122	76	104	104	60	82	53	74	71	82
ATCCACACTTTGCCTT	alt_3516_upstream	158	79	220	199	76	153	78	170	80	145
ACGTTCCTAAGTCTTA	alt_3516_upstream	11	20	18	15	20	11	24	5	12	10
GTTGGTGCTTCTAGTT	alt_3516_upstream	11	3	14	9	3	9	2	6	5	9
TGCTTCATTCTGGTAT	alt_3516_upstream	23	15	36	49	24	33	15	37	14	20
ACGATTAGGTTAGGGC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
GAATAGCTTGATGGCG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTTCATTTATCGA	alt_3516_upstream	71	41	76	102	33	70	29	75	51	57
CAAAACAAACGGTAGG	alt_3516_upstream	87	36	104	84	41	88	59	101	43	80
TAGCCGTATATATACA	alt_3516_upstream	141	87	187	177	108	134	89	141	94	138
TTCAGCTCCTTTAGGC	alt_3516_upstream	61	20	63	58	38	56	38	51	39	48
ACTATTCAAAAACATC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGTAACTCTATAT	alt_3516_upstream	3	3	5	4	2	4	0	2	3	3
CAGTTCTTCACAAACC	alt_3516_upstream	34	35	50	40	28	27	16	38	29	20
GATGTTTAATTACTCA	alt_3516_upstream	111	41	125	109	49	112	67	112	54	88
TGCCTCGTCCCACTCG	alt_3516_upstream	110	56	145	136	62	114	62	105	52	109
TCATGTCTTTTTTGGT	alt_3516_upstream	163	103	234	180	125	153	144	155	134	156
TAAACGTAATAAAAGT	alt_3516_upstream	31	13	21	26	7	31	10	18	13	25
TCCAAGTCACATTTCG	alt_3516_upstream	13	6	19	17	7	16	7	15	11	8
ATTGGCCTTTGCTCGG	alt_3516_upstream	3	0	4	2	1	7	2	4	1	6
CCGATTCACCGTTTGG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCCTTGTCTGCTT	alt_3516_upstream	348	195	451	423	222	295	212	390	195	365
CATCACCGTTAAATTT	alt_3516_upstream	29	13	41	39	20	24	19	40	23	36
TTTTGTGTCATAAGTT	alt_3516_upstream	49	27	40	43	17	33	12	37	20	29
GGCCCCCTCGATAATC	alt_3516_upstream	26	6	21	15	11	15	9	12	9	15
GCTGCTTACGTCAAAT	alt_3516_upstream	164	91	216	170	91	140	109	145	109	139
GTGTCACCGCGCGAGC	alt_3516_upstream	46	16	50	39	16	52	31	44	23	48
ACACCTGCAAGATCCG	alt_3516_upstream	13	15	23	25	10	22	12	25	3	24
TTACGTTTGCCCTCCT	alt_3516_upstream	5	4	5	9	3	8	8	13	8	11
CTCTGCTACTTTCGGG	alt_3516_upstream	104	57	119	91	47	85	69	93	64	83
TCGTTGACCTAATCAT	alt_3516_upstream	37	22	40	32	18	34	24	35	22	36
GGAGAAGGGCTAATCT	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCTTCATCGGAAG	alt_3516_upstream	72	62	91	85	49	72	54	64	61	68
CGGTGGTAGTAAATGG	alt_3516_upstream	107	24	96	61	39	84	34	71	45	52
ATAGCCTTACATTCAA	alt_3516_upstream	38	15	49	41	19	53	19	45	20	40
TTCCGGCTACACTGTG	alt_3516_upstream	32	50	58	54	66	37	56	31	61	30
TGACACTTGATCTACG	alt_3516_upstream	19	11	20	21	9	11	17	11	12	18
AGGTTTTTTTAACTAT	alt_3516_upstream	52	30	86	70	26	51	16	49	53	51
TTGGGGGTACTCATTC	alt_3516_upstream	32	21	35	46	12	38	19	36	15	26
AAATTGTAATTTGAGG	alt_3516_upstream	74	29	110	98	42	86	48	88	41	83
AAGCTTGATTCTTACA	alt_3516_upstream	38	19	54	36	14	41	15	42	18	38
TAACCAGCGCGTACTA	alt_3516_upstream	146	97	202	198	89	166	116	175	95	159
TGTTATAAGTAACCGC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
CCATTTATAGTCTGCC	alt_3516_upstream	43	11	45	33	15	22	16	30	14	19
ATGACACGTGACTGCT	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAATTCATTATAA	alt_3516_upstream	18	7	19	16	9	12	6	18	8	17
TCAGAATTATAGGTAC	alt_3516_upstream	42	15	43	32	18	35	29	38	21	23
GCTGCTTATCGGTGAC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
ATTTACGTGTTTGCAA	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCATCCACATGCG	alt_3516_upstream	11	20	29	23	20	6	16	21	22	16
GACCGATTGCTCTGTC	alt_3516_upstream	11	9	21	16	17	24	19	7	15	12
AGTCCAGATCATGCAC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCCATTACAATC	alt_3516_upstream	213	89	249	207	105	188	117	202	108	169
CCTTAGAATTGAAGTA	alt_3516_upstream	39	11	34	31	17	41	13	41	17	31
TCCTAGGGACGCCGTT	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
ATATCTGGATTGTTTA	alt_3516_upstream	64	35	86	80	40	77	29	60	34	62
TGCGGGAACCGCATTG	alt_3516_upstream	6	6	14	8	1	7	3	13	1	5
TAACCGCAATAGTTTA	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGAGTAGTCCTTT	alt_3516_upstream	28	9	28	21	8	17	8	17	16	16
GAACATCGTTTATGTC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAAGCGTTACTCT	alt_3516_upstream	89	32	107	72	31	76	45	100	53	88
GTGTTCTGTCTAATGT	alt_3516_upstream	49	12	58	39	26	42	17	36	23	41
ATATATGGGTACTACG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTATGCCCCTAA	alt_3516_upstream	26	15	36	41	16	44	11	18	19	35
GCCAGAACCGTTTAGC	alt_3516_upstream	15	5	9	10	4	1	2	7	10	5
GGACGCATACATTTCC	alt_3516_upstream	44	26	69	45	18	58	19	37	31	32
TAGTTATTGATTAATT	alt_3516_upstream	14	5	16	13	7	15	3	9	13	15
AGTTGGGCAGTTTTAG	alt_3516_upstream	24	11	26	25	12	21	15	18	16	7
GGATATGGTACGCGGC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
ATTATGGTTCAGTTCA	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
AGAAAATTCCCAGAGC	alt_3516_upstream	18	5	12	8	4	8	3	12	1	13
ATTAGGATGGAGAGTT	alt_3516_upstream	11	9	19	23	4	14	9	19	9	10
ATACCTTCACGGTCTT	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
GTAACTGAATCTCATG	alt_3516_upstream	19	7	30	23	11	20	5	10	19	10
TCTTGGTATTTGTGTA	alt_3516_upstream	22	12	21	12	13	19	8	10	4	14
GCAACGAAGCCCTTCG	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
CTGACAGGACACTCAC	alt_3516_upstream	0	0	0	0	0	0	0	0	0	0
GTGAGTGAGATCAATC	alt_3516_upstream	112	52	126	117	35	90	47	99	48	94
CAGACGCAAACGTTTG	ref_5553_fdr	4	13	4	10	13	13	11	7	16	4
GTAAATTTATATAGTG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCTAACGTTCTAC	ref_5553_fdr	64	71	83	65	67	67	71	58	74	47
ATACCATTGGCAATCA	ref_5553_fdr	37	61	48	51	50	52	59	32	49	39
GCCTCTCTCGCTACTA	ref_5553_fdr	15	11	13	14	22	13	16	12	14	7
AGCTTGGCTAGCGTAT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGACTGGTGTTCC	ref_5553_fdr	3	18	9	7	9	14	8	8	16	7
CACGAGTATCCTCTAT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCTATATCTTCGC	ref_5553_fdr	6	9	12	7	9	10	11	6	11	8
GTGGCGCACGGCGAAC	ref_5553_fdr	45	41	36	37	36	36	61	36	52	32
GCCCCCCGGCATCGCT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAGCCAGGATCACTGA	ref_5553_fdr	44	71	51	43	75	51	82	56	56	44
GGCGGTAATGCGGTTC	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGATTCATGGCCA	ref_5553_fdr	16	14	24	23	26	19	15	15	19	9
TCTAGAAAGTTAGCGT	ref_5553_fdr	9	7	12	6	14	11	12	11	10	12
ACTGGCTTCTTTAATC	ref_5553_fdr	26	37	49	38	40	48	39	39	34	48
GCCAGGCGGGTCTCGA	ref_5553_fdr	36	42	38	36	36	27	37	34	26	29
TCTGAGCACTCGAATA	ref_5553_fdr	24	33	33	20	27	22	19	27	22	23
TGAACTGGAGCGATGT	ref_5553_fdr	40	33	48	57	36	64	35	48	56	41
TCAGATCAATCGCAGT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGCTATGTTGTTGCGT	ref_5553_fdr	2	14	11	6	3	7	11	9	9	10
ACGTCAATAGTTACTG	ref_5553_fdr	5	1	3	7	3	4	3	10	5	6
CAATGGCCTAGATCAC	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TACCATAGACTTGTAA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGGACCCATGAAA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCGAGGCTGGCCA	ref_5553_fdr	23	20	27	24	16	21	12	13	19	21
CACCTCAGTCCAGTAA	ref_5553_fdr	46	68	55	42	52	45	42	40	52	39
CTCTGGTGATGCAGCT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGACCCGTCACTT	ref_5553_fdr	34	43	45	35	54	37	62	30	41	33
TACTCACCCACCGTCC	ref_5553_fdr	23	23	17	11	22	15	26	29	27	18
TGGATTGCGGGTATGC	ref_5553_fdr	28	33	41	27	36	30	46	41	38	45
CGTAATCTAGCTCCTT	ref_5553_fdr	12	11	17	8	16	14	13	12	16	12
GGATATAGCACCCCTA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGACTAACGGATG	ref_5553_fdr	51	79	63	51	75	46	81	43	76	53
CCCTTTTTTCCGTTGG	ref_5553_fdr	98	58	67	59	92	79	90	70	83	61
ATGATTTCCACCGGTG	ref_5553_fdr	96	100	130	109	104	103	121	96	102	85
AATATATTCTAGAAGG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTGTTTCACATT	ref_5553_fdr	4	4	5	12	3	4	2	3	5	6
AGTATAACCTCTGAGT	ref_5553_fdr	6	2	6	4	9	5	11	3	5	1
GACAGCCTTATCAGTC	ref_5553_fdr	4	7	4	6	4	4	1	3	9	1
TGCTAAATAATCCGAT	ref_5553_fdr	43	44	70	43	48	57	35	43	30	47
GTAACGGGGTGGCATA	ref_5553_fdr	94	91	97	84	90	77	93	60	84	77
AGTCTTATTTTAACTA	ref_5553_fdr	4	1	0	1	3	6	4	2	2	1
GGGGTCTGCATTCTCA	ref_5553_fdr	2	9	4	4	4	6	7	4	2	6
GGTTTCTTTAGCGGGT	ref_5553_fdr	61	63	58	71	62	47	63	58	70	56
CTTAGAATCCAGATCA	ref_5553_fdr	104	101	127	84	114	95	140	95	112	113
TCAGCCTTCTCTTGCG	ref_5553_fdr	6	14	8	7	15	11	19	12	14	6
ACTTGCCTTAATATAT	ref_5553_fdr	6	8	5	5	9	9	8	12	7	7
ATGGGCGTTCGGCTTG	ref_5553_fdr	68	52	80	69	74	48	65	48	78	62
TTCCGCGTGTTTCTCT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGGAGGCTTTTCTTTC	ref_5553_fdr	10	7	21	13	9	19	21	12	8	15
TTATCTAAGTATGCAC	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGGAAATATACAA	ref_5553_fdr	10	12	16	9	10	8	14	8	17	7
CAGCGTTCAGTCAGCC	ref_5553_fdr	1	4	1	3	2	3	5	2	10	1
GCTAGAACCGGCAACG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TTATTCCGCTTGTTCG	ref_5553_fdr	13	19	11	10	11	12	13	6	8	7
ACCGTTTTTATCGGAC	ref_5553_fdr	5	15	9	12	12	5	18	5	18	2
GGAATTGACTCGATCA	ref_5553_fdr	187	221	262	227	211	211	253	221	246	215
TAAACCGGGACAAGTC	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCATTCCGGGTCGGGG	ref_5553_fdr	7	9	12	11	9	9	14	10	4	6
TTACGATCCCTGTTTT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAACGGTTTGTTCTGT	ref_5553_fdr	11	12	10	15	11	9	16	13	16	10
TGCTTGCCTTCCAGTA	ref_5553_fdr	12	18	32	25	23	16	21	19	33	20
TTTTACTCAGTGATTG	ref_5553_fdr	6	5	6	5	9	3	5	5	7	11
TCACTCCAAGGTAGAT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAACTATAGCCGACGT	ref_5553_fdr	55	55	65	76	65	78	66	55	67	77
TGGGGAGGCTACCCGG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GACACTGCTATATGCT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGCACAGTAGGAG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TATGCATGCCATCGTG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAACCACGGATGCTTT	ref_5553_fdr	19	28	24	22	34	26	34	24	32	18
TCAATTCTATACGGTT	ref_5553_fdr	18	18	29	21	31	16	33	20	26	16
GCACCTTCACCCGTAT	ref_5553_fdr	29	16	24	24	43	18	25	27	38	21
TTTCTTTTCATAACTT	ref_5553_fdr	24	15	26	25	28	23	21	20	26	19
GATCGATTGTTTATCG	ref_5553_fdr	16	14	17	17	18	12	15	11	21	14
CACTGAGTTGCTATTC	ref_5553_fdr	6	5	8	4	4	2	4	2	5	3
TTATGCATCTGCCTTG	ref_5553_fdr	4	4	4	9	2	5	3	3	6	2
GTCTAAAATACTCTAA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTGTGCGTCACGA	ref_5553_fdr	23	30	26	29	39	22	21	21	40	33
ATGCTAAGTTTATCGT	ref_5553_fdr	14	5	15	9	12	9	10	10	12	10
TGGCAGTGACTAATAT	ref_5553_fdr	58	48	79	48	56	43	48	61	59	56
CGTTCTCAGATATTAC	ref_5553_fdr	44	42	62	53	62	57	65	45	73	48
CCTCAACATTCTCTCT	ref_5553_fdr	7	12	19	13	7	22	12	10	10	10
GCTGTACACCACGGTG	ref_5553_fdr	0	1	3	4	3	4	0	3	1	1
TATTGGGGCTCTTATT	ref_5553_fdr	9	9	4	13	13	13	1	8	11	10
TCGCCAGCTTTGTCTT	ref_5553_fdr	19	41	57	27	32	25	40	33	35	33
GATAATGACCCACTTT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGATTAGTGTGGACGC	ref_5553_fdr	12	6	8	10	14	3	15	9	20	8
CTTATTGCGTTGGGTC	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGACGAATAATCG	ref_5553_fdr	48	54	67	57	44	46	54	47	47	30
CTATCCCTGGGGTTTG	ref_5553_fdr	21	23	31	23	20	19	25	14	21	22
TATTTTCGTTTCAGAT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GCATAGCTATTCGCAA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGGTAGTCAGACC	ref_5553_fdr	26	14	20	22	16	16	6	20	21	6
AGCCCTGGTTTCGCTC	ref_5553_fdr	13	27	21	8	29	15	28	24	21	18
TTCAGCGTATCGGTTA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GAATGTGTATTGTCGG	ref_5553_fdr	50	46	49	48	44	47	41	37	51	35
TGTTACAAGTTCGATA	ref_5553_fdr	5	4	3	10	5	5	9	0	6	1
TTGGTCACCTTCACGA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CTATCGATATGTGGTT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGCCCCAAGCCGG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAGATCGAACCTTCGT	ref_5553_fdr	2	3	4	8	4	9	7	0	7	6
ATGTATACGGTGCGAG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GCCAACTTAGCCTGTA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTTACTTGCTTAT	ref_5553_fdr	69	99	104	81	93	83	101	90	93	70
TAATCCACCAGTGGTC	ref_5553_fdr	14	22	34	24	25	17	25	16	29	19
CAAATTGGACTTTCCA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTTTCTGGTCTAT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TCCTAGTATTTCATGG	ref_5553_fdr	58	35	48	38	33	40	36	27	41	34
CCGTACCCGGAGAGTA	ref_5553_fdr	40	42	45	30	42	37	55	47	45	43
TGTATTAATGTTCATG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTCATTCACTTTT	ref_5553_fdr	25	21	31	24	29	20	23	28	17	20
GTATGGGCAGTTGTTT	ref_5553_fdr	43	42	42	39	52	33	48	33	45	42
CAGCTACCTACAGCAG	ref_5553_fdr	2	5	2	9	14	4	11	10	13	2
GAATTCTCGGCTAGCT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
ATCCGCAATGTAAGCC	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
TAATTCGCAGCGTGTT	ref_5553_fdr	65	42	76	54	39	50	60	58	48	57
GCCTGTTTATCCTTCA	ref_5553_fdr	12	10	12	21	11	20	14	12	11	10
CCTTAGGGATAAGGTT	ref_5553_fdr	30	39	38	36	36	23	37	21	34	28
GCATTAATAGATTCAA	ref_5553_fdr	12	6	8	18	9	8	4	3	10	6
CATTACGATGCTGGTT	ref_5553_fdr	121	109	145	96	135	100	145	104	143	82
GCTTTTATAACTCCTC	ref_5553_fdr	4	3	9	8	8	6	13	8	8	8
TATAAGTTGCCAAAAG	ref_5553_fdr	61	35	48	43	41	47	39	49	47	31
GGACATTGTGACTGTC	ref_5553_fdr	20	36	47	23	43	26	41	34	41	34
CCGTGTACATTGTCTG	ref_5553_fdr	31	37	35	32	31	36	35	29	21	26
TAAAACACTACCTCAG	ref_5553_fdr	25	18	37	33	26	26	32	27	21	23
AAACACGCCTCCAAAT	ref_5553_fdr	16	24	26	31	34	27	24	21	27	27
CCTCGAGCCGAGGTGT	ref_5553_fdr	1	6	7	2	3	1	7	2	3	2
GTGACGCTGTATGTGG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCGATTGTTCCAG	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCTGTTACCTTCG	ref_5553_fdr	5	6	3	6	7	4	7	2	4	6
AAGTGTGGACCCTCTC	ref_5553_fdr	3	3	3	3	7	5	8	5	6	0
GCTCACGGACTGTTTA	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGCTATTTTAATT	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGCATACTGGCTGGCT	ref_5553_fdr	18	36	31	29	33	26	18	20	19	17
TATACCATGCATTCCG	ref_5553_fdr	11	11	12	7	17	10	13	12	10	6
AAGAATAGATTGCCAT	ref_5553_fdr	3	6	6	8	3	5	8	4	1	7
TCACGTATGTAGGTAC	ref_5553_fdr	1	8	2	4	0	5	6	4	1	7
CCGCAAAAGTTCCCGC	ref_5553_fdr	0	0	0	0	0	0	0	0	0	0
GGTTATTGGCGTTCGG	ref_959_RC	37	14	42	39	9	30	17	31	11	41
AAAGTTTATTCGCGTG	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TTCAGTCCTCCGGTGT	ref_959_RC	0	1	1	1	1	0	0	0	0	0
TGTACCAATTTGATTC	ref_959_RC	22	18	30	18	10	25	12	29	7	17
GCAGGCCAGTCAGTTA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GAGGAGGACCTGTTCA	ref_959_RC	16	3	18	32	3	15	6	14	5	7
CCCCCCAGTTTTTTCG	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TATATCTGGGTGATCC	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TCACACTACGCCAGAC	ref_959_RC	0	0	0	0	0	0	0	0	0	0
CGCTGCCCTGATATCA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GGATATGAATTGCTGG	ref_959_RC	14	4	14	10	4	13	0	6	2	9
TACCACAGTTGTTTAC	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GGTGCTCTGACTCAGG	ref_959_RC	13	8	19	14	3	16	9	12	7	15
GTTTGGCGGAACGTCT	ref_959_RC	15	15	29	33	11	22	16	18	7	23
TATCGCCTGACGTAAA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TCATGCATAGCGGGAA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GATCGTTGGCCGCGAA	ref_959_RC	15	4	9	7	2	8	8	11	6	5
AGAATCCGAGGGAGTG	ref_959_RC	11	6	5	16	6	8	4	7	1	12
TCTGAGGAGTGACACC	ref_959_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTCATCCAGTTA	ref_959_RC	6	1	7	3	1	4	2	8	3	2
GAGTCTCTTTCAGGGC	ref_959_RC	28	16	35	27	14	24	13	27	12	18
TTATGCGAGTAACATA	ref_959_RC	53	24	57	51	18	48	26	46	28	45
TTAATCTGTAAATCGA	ref_959_RC	68	20	60	53	14	41	29	55	28	36
TTGTTTGGTTCTCAGA	ref_959_RC	46	15	80	52	21	51	25	51	26	49
GCCCGATTTCTCCCCG	ref_959_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGATCCCACGTG	ref_959_RC	229	100	291	257	111	235	106	241	100	206
CTTCATCCCTCTGTAA	ref_959_RC	305	107	401	316	130	262	128	291	159	275
ATACGGGGAATGATTG	ref_959_RC	85	45	103	84	33	85	48	75	36	75
CAGGAAATGACTGTGA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
AGTCGCCGCAAGTATA	ref_959_RC	85	41	98	77	36	69	48	73	42	82
TTGGAGTGGCAATAGC	ref_959_RC	43	17	81	65	23	50	22	48	25	71
TGTGGTTTGTGGCATA	ref_959_RC	32	18	36	30	18	28	20	35	17	26
CGAGCTGTAAGTTTAA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GAACCGTTAGGCGTGC	ref_959_RC	22	14	27	23	8	23	5	26	10	22
GTTCCCGCAGGTTGTC	ref_959_RC	44	26	80	44	26	63	18	61	25	56
AGGTCTCGCAATTATG	ref_959_RC	5	5	13	10	4	8	7	7	9	7
AGCGACGTGCATTTTC	ref_959_RC	176	84	274	226	102	180	64	212	82	219
TGGCCTACGACCAGAG	ref_959_RC	0	0	0	0	0	0	0	0	0	0
CTGCATCTAATCGTGG	ref_959_RC	90	32	110	101	38	75	44	78	41	56
GGGTCTGCCATGCACG	ref_959_RC	26	13	40	48	16	30	16	38	25	29
CTGGCTTCTCTACTTA	ref_959_RC	10	9	18	13	6	3	3	8	3	7
CTATCGTTTATAATAT	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TCCGGAACCCATGTAG	ref_959_RC	4	12	11	4	12	5	13	7	19	11
GTCGACTGCTCATCTA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
CATATTGCGCCAGGTG	ref_959_RC	17	11	32	31	8	17	8	18	16	16
TAACAATAACACCTAC	ref_959_RC	25	26	41	29	36	31	46	23	24	33
TCGTCCGAGCCAAACG	ref_959_RC	5	1	1	3	1	1	2	2	1	0
GGCTAGAACCTCAACA	ref_959_RC	9	2	8	9	1	6	2	6	2	6
TGCTATTTGGACATTG	ref_959_RC	93	29	114	85	37	79	34	84	37	55
ATTTCAGATTCTATAT	ref_959_RC	95	37	92	93	26	94	22	77	35	80
GCCTGACGTCAATTTG	ref_959_RC	48	28	65	51	21	40	31	47	19	42
ATTGTAATATCATGAA	ref_959_RC	12	11	12	22	3	23	7	14	10	17
TTCGAGGTATGATGGA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TACTATAGTCGGGAGT	ref_959_RC	27	16	36	31	10	20	22	31	13	21
TCAAAACGGCCCCTCG	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TAGTGATAGCTACAGA	ref_959_RC	111	43	150	120	33	101	49	110	46	112
TGCACGAAATCGCGCC	ref_959_RC	14	6	18	6	5	12	8	11	3	13
TCGCGCGTCTTTGATA	ref_959_RC	5	2	2	2	3	2	3	1	0	3
GGTCATCTGCTACGTG	ref_959_RC	67	41	89	69	30	94	31	77	34	60
GGCCTGTTCGGAGTAT	ref_959_RC	8	15	17	10	14	11	11	13	18	14
GGCACGTGCCTTGGGT	ref_959_RC	76	40	83	79	31	55	32	59	32	66
CCTGATCCTACAAATT	ref_959_RC	17	1	16	18	1	21	8	16	7	16
GCCTCCTTGTTACCCG	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TACAGAGCGCTGATTT	ref_959_RC	28	13	30	27	11	20	13	29	4	30
CGCCTGGTGGAGTTCT	ref_959_RC	341	128	422	326	159	327	126	308	157	284
GGCGTGCCCTGCATTA	ref_959_RC	17	4	21	26	3	21	5	22	5	20
CTTCTTTCCACTTGCG	ref_959_RC	16	13	34	36	12	18	12	24	16	14
GCTATAATACCTTGTA	ref_959_RC	29	15	53	41	13	49	23	38	27	41
ACTTTACCTACGCCTT	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TCTTTAACAGTTATCG	ref_959_RC	21	7	34	23	8	23	9	23	10	23
TGGTTTCTGCACGCCT	ref_959_RC	69	18	71	47	36	45	27	45	23	30
CGCTGCAAGTTTTGAG	ref_959_RC	32	10	38	32	9	25	14	27	10	28
GGGCTTTACATCACGT	ref_959_RC	56	31	73	59	22	50	20	49	17	52
TAGCACTATGCTTTTG	ref_959_RC	41	17	46	44	11	43	16	24	29	22
TGTGAAAATAGACTAA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GCCTCCGGCATTGTGG	ref_959_RC	68	19	92	81	29	72	25	70	34	58
TTCTAGCCGGACCCAG	ref_959_RC	29	9	40	38	14	25	12	30	12	20
TCTCCAGATTAGACTC	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TGTCGTGTGTCTGAGG	ref_959_RC	107	42	117	133	35	84	40	91	38	100
TACACTACTGCTCCCT	ref_959_RC	103	97	93	92	84	69	76	91	81	79
ATTGTTCATGTGTTTA	ref_959_RC	169	61	180	167	57	137	57	168	57	137
TTCACTCTCGTTTACG	ref_959_RC	0	0	0	0	0	0	0	0	0	0
ACTGTCACTCTAGCCG	ref_959_RC	78	19	85	67	37	67	42	60	34	54
GATCGGCTTTGCGCTC	ref_959_RC	26	9	37	24	5	10	8	19	4	20
CCTCGGTATGGATATT	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TTAGTGATATCCTCCA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GTGACAGGTAGGAGCC	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TTAGTTTAGCGCACAC	ref_959_RC	312	146	366	335	164	270	175	252	177	233
CGGTAATACGGTGCGT	ref_959_RC	11	1	11	7	2	8	1	5	3	10
TCACTATTGAGCGCAA	ref_959_RC	6	1	4	7	1	10	3	3	6	5
GGACTACTGACCTTTG	ref_959_RC	18	4	31	21	9	18	7	26	9	22
ACGATAAAGATGACAT	ref_959_RC	0	0	0	0	0	0	0	0	0	0
GATTTATCCTCAGGTC	ref_959_RC	162	42	196	139	57	121	46	130	48	130
ATTGCCTTTTCTTTTC	ref_959_RC	0	0	0	0	0	0	0	0	0	0
CCTACTTGAATAATTA	ref_959_RC	0	0	0	0	0	0	0	0	0	0
TCGGTTTTGGATTTCT	ref_959_RC	0	0	0	0	0	0	0	0	0	0
CTCCGGTGCGTCAACT	ref_959_RC	5	28	5	6	32	9	27	8	30	11
TCCCCTGGTTGTAAGT	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGTTAGTACAGTA	alt_5392_upstream	5	3	2	1	7	3	11	7	5	5
TTTCATACTGTTCAGT	alt_5392_upstream	7	19	4	9	16	6	13	10	28	12
GCATTGTACTTCCAAC	alt_5392_upstream	2	3	4	4	5	2	7	7	3	4
ATGCTAGTTTGGGGCG	alt_5392_upstream	59	62	83	59	74	50	87	44	74	64
ATATCTCTCCCGTACT	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
ATACGGTTTGCCAAAC	alt_5392_upstream	17	20	12	14	23	13	30	10	34	17
ACTCCGCGGGGAGGAA	alt_5392_upstream	2	30	11	5	27	2	23	4	26	0
TCCAGACACCAATTCT	alt_5392_upstream	16	30	20	12	37	17	26	13	30	13
CAGGAGGATATATCCC	alt_5392_upstream	28	49	34	27	29	16	42	24	48	29
GGTGAATAATTTTATA	alt_5392_upstream	1	5	3	6	5	10	10	5	9	2
ACTAGGAGATGTGGTT	alt_5392_upstream	9	24	9	10	24	11	6	15	19	13
CTAGAGTTTATGCTCC	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCGTGGTCAGGCT	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAGGCGCCAAAAC	alt_5392_upstream	26	18	22	25	27	18	22	19	33	35
AATAGTGTAGTAGCTG	alt_5392_upstream	16	34	23	18	34	17	34	23	33	16
TAACCCATTCTGTGGC	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTCTTCGTTCGA	alt_5392_upstream	27	26	35	31	29	20	37	37	45	30
GAATAACAAGTCAGTC	alt_5392_upstream	17	25	20	25	27	18	32	23	31	15
TAGTTGGTACTTTTTA	alt_5392_upstream	40	50	36	29	36	29	43	22	57	30
CACGGCTGAACAAACA	alt_5392_upstream	488	544	607	562	589	509	620	445	582	418
CCACGTAAATAGCTTG	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTTTTCTGGATGG	alt_5392_upstream	9	15	10	10	18	11	12	18	21	10
GTTAGATCTATCTAAA	alt_5392_upstream	34	27	28	29	23	21	31	26	44	24
TAAGTCATATCTCGCA	alt_5392_upstream	10	5	9	4	9	5	4	5	9	6
TATGAACGTAAATCTG	alt_5392_upstream	7	16	4	3	16	6	5	4	1	6
ATGGGGCACCCGACAG	alt_5392_upstream	30	53	32	37	45	44	56	43	48	41
TTGAATATAAAATTAG	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCATCTGGTCACC	alt_5392_upstream	57	95	47	44	98	32	91	45	108	41
GCCGCGCGTAACCTCA	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTTAGGTTGTGAA	alt_5392_upstream	68	78	70	72	88	64	76	60	81	73
TCCCAGTCCGTTTCGA	alt_5392_upstream	96	102	93	100	119	92	142	76	141	72
TCGCCGCTCTAGGTGC	alt_5392_upstream	13	25	5	7	17	8	21	5	24	3
GTCAGTGCAGCACCCA	alt_5392_upstream	15	20	26	20	24	14	27	14	14	9
TCATTCCACTGTTCGT	alt_5392_upstream	15	21	23	15	22	10	26	7	32	10
ATGATAGTGTCAAAAT	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCTGATACATTGC	alt_5392_upstream	28	22	27	21	34	15	21	20	20	24
TGTCAACGGCGGTTAT	alt_5392_upstream	31	54	42	30	35	43	44	25	48	24
AGGGCGGAGCTGTAGC	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
GCCTATTTCGCTCTCG	alt_5392_upstream	38	60	57	36	67	35	62	37	64	28
CACGTGTGGTTAGTTA	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTCTTAGCGTTGA	alt_5392_upstream	18	11	21	14	30	14	13	13	15	14
ATTAAAACATTGCGAT	alt_5392_upstream	63	58	73	71	81	60	70	48	112	59
ACCACGGCATTAGGCA	alt_5392_upstream	15	25	9	12	13	5	18	11	15	8
TACAGCTGGGCAATGG	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTTGATTCCTTCG	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
TAACACTGGCGGGCAA	alt_5392_upstream	2	0	2	4	2	1	1	1	1	3
CGCTCGAATTCTTGGA	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGAATTCTGCGAG	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
AAGGACATGATGGTGA	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTACCAGCGCGGT	alt_5392_upstream	0	0	0	0	0	0	0	0	0	0
CAGAGCGTCTTGATCT	alt_5392_upstream	19	14	9	6	17	22	7	16	13	3
TCCGTTTCCGTTTCTG	alt_5392_upstream	23	40	26	28	40	20	54	21	47	22
TTAGTCCGCATAGAGG	ref_5937_new	52	90	77	75	60	60	75	40	90	35
ACATTCGTTGGTGCCT	ref_5937_new	18	29	38	23	30	35	32	29	28	17
ATTGATCTCACAGCTC	ref_5937_new	77	70	108	74	74	86	93	69	39	73
CGTGCATCTGTTCTTT	ref_5937_new	3	22	4	3	19	0	9	1	13	3
CATGTTTTTATCACAT	ref_5937_new	3	0	1	1	0	1	2	2	1	2
GGTCTATTGTTAGCGT	ref_5937_new	31	36	31	36	43	33	34	42	52	28
TAATGTTTTTTTCCAG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
TACCCTTTGACGCTCC	ref_5937_new	67	93	92	72	86	67	83	73	90	60
GGTTGAGTATAAGTAA	ref_5937_new	0	0	0	0	0	0	0	0	0	0
GTCAACTCTATGGTTT	ref_5937_new	1	2	1	4	0	1	0	2	2	1
CCACTCGAAAAGGCTT	ref_5937_new	13	19	14	9	19	8	17	12	27	13
TTCCCCTGTGAAGCTC	ref_5937_new	122	171	124	103	165	99	154	107	135	96
CGATCGCGCATCTCGA	ref_5937_new	53	62	51	47	51	48	44	34	58	33
GCTATGATTCTTGAGT	ref_5937_new	66	68	55	60	67	49	80	49	95	35
CTAGCGCTGAGCTCAT	ref_5937_new	5	8	3	5	6	6	8	5	7	5
TTTGCGTTGTTAGTCA	ref_5937_new	36	27	29	30	33	34	39	31	48	33
GACCACCGTCTAGAAC	ref_5937_new	0	0	0	0	0	0	0	0	0	0
ACTCTTGGTGTTACAG	ref_5937_new	11	27	21	7	9	19	26	7	21	12
AAGCTTTTCGGTTTTT	ref_5937_new	110	82	123	110	108	98	99	71	113	88
TCTTTTACTCATCGAG	ref_5937_new	10	7	7	14	8	16	8	11	16	8
CCTTTACTTTCGGACG	ref_5937_new	45	66	59	33	66	53	51	49	53	36
GGTTGGCGTAGACTGA	ref_5937_new	3	1	2	1	4	2	2	1	3	2
GCAGTGAAGCGCATCA	ref_5937_new	25	46	43	33	47	30	51	39	34	32
GTAAGGCTATCTCAAC	ref_5937_new	0	0	0	0	0	0	0	0	0	0
ATATCTGATGTTCTGG	ref_5937_new	6	9	11	11	8	9	18	11	5	7
ATTGGACTAACCGGGG	ref_5937_new	133	139	183	135	175	125	149	122	157	141
CACAATTACCGCAATC	ref_5937_new	106	122	120	94	100	104	118	84	122	78
TTAATTTCCGCGTTTC	ref_5937_new	37	39	37	35	62	29	44	32	57	31
TATAGGCTTACGGCCA	ref_5937_new	167	219	246	206	215	160	250	181	205	189
TGGCCCGAAGTATGAT	ref_5937_new	24	19	13	24	20	17	24	11	23	14
TTTCATACAACATACT	ref_5937_new	62	51	62	66	67	44	75	47	69	53
TTAATAGTTGTTGAAA	ref_5937_new	94	89	128	89	97	84	119	99	87	98
AGAAGTGAGTGCCTTT	ref_5937_new	0	0	0	0	0	0	0	0	0	0
GGTCCTGTCGTTCTGA	ref_5937_new	17	23	33	26	26	14	22	16	30	20
ATTCATCAACGCGGCG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
GACCGGTTCCTTGCGT	ref_5937_new	0	0	0	0	0	0	0	0	0	0
CCTGGGGCCCGAGTGC	ref_5937_new	1	1	2	0	1	1	2	2	1	0
CACCTAGTCGCACTTA	ref_5937_new	0	0	0	0	0	0	0	0	0	0
CATGAGATCCAGAACC	ref_5937_new	64	53	66	79	59	52	77	50	83	51
TAGTGCTAGTTAAGGG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
TTGGCGCTTATCAGTG	ref_5937_new	26	26	19	36	20	29	29	28	26	22
AGCGAAGTCAGGGGGT	ref_5937_new	0	0	0	0	0	0	0	0	0	0
TCCCCTACGCGAAGGA	ref_5937_new	35	39	33	37	42	33	45	43	33	24
AGCAGTTAAATCAGGG	ref_5937_new	13	9	10	16	12	10	18	11	4	10
ACATTGAAGATGGCGT	ref_5937_new	6	3	4	9	4	6	4	5	5	5
TTTCGGTTTCTTAAAG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
AATGCAATCAGTTCCC	ref_5937_new	0	0	0	0	0	0	0	0	0	0
GGATATGCGAGTGTCA	ref_5937_new	0	0	0	0	0	0	0	0	0	0
AGTCTCTCCCCACCGG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
TTAGTCGCGTAAAACA	ref_5937_new	0	0	0	0	0	0	0	0	0	0
GTGATACTTGCAAGCC	ref_5937_new	2	1	2	3	1	0	0	0	1	0
GGAGCCGATATGTTTC	ref_5937_new	24	34	37	28	30	20	21	30	28	34
GTTTGGACTCCGCGCA	ref_5937_new	79	81	88	68	80	57	98	67	68	68
TACAGATAATCTTTTT	ref_5937_new	16	14	23	30	24	16	16	14	15	17
AGATAATCGAGCACGC	ref_5937_new	46	46	79	48	44	52	45	36	56	56
AATTAGATCCTGTCGA	ref_5937_new	25	22	24	32	27	35	22	23	22	22
AATCGGTTAACGTGTT	ref_5937_new	19	24	42	16	24	22	25	20	34	24
GTTTTCCTTTAAACTC	ref_5937_new	19	26	29	18	24	15	29	17	30	22
ATAGTTAGAGGCAAGT	ref_5937_new	51	69	68	50	60	46	63	68	68	40
AGTTTGTCTCTACAGC	ref_5937_new	1	5	6	7	7	7	16	7	11	9
CTTACCGGCTTGCGAA	ref_5937_new	22	41	23	26	35	24	43	17	38	24
ATCGGCTTGTGGTTGC	ref_5937_new	0	0	0	0	0	0	0	0	0	0
TTGCGTGAGCTATTGT	ref_5937_new	29	27	37	33	30	36	40	38	42	24
TGACTGAACGAATTTA	ref_5937_new	27	36	45	48	44	33	58	36	53	34
ACGCGGTTGTGTTCAC	ref_5937_new	71	107	94	80	92	69	108	62	130	56
ACCCGTTTAAGTTTTG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
GATTCCAACGTGCGAG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
CTACCCACCGTCTGTC	ref_5937_new	14	30	34	29	26	30	38	20	38	23
GGGCTCAGCGATTATG	ref_5937_new	25	33	34	31	37	27	46	23	35	31
TGCGATTACAGGTAGG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
TCCTTCGCTTCTAGAA	ref_5937_new	0	0	0	0	0	0	0	0	0	0
ATAACGTTTGAGATTT	ref_5937_new	15	17	17	21	15	17	19	13	19	13
CTCATATGGTTAGTAC	ref_5937_new	25	42	43	32	54	22	38	22	44	19
CTGCGCTTCGTCTTAC	ref_5937_new	8	13	6	5	9	4	6	3	14	3
CATGAATGGTGGATCG	ref_5937_new	0	0	0	0	0	0	0	0	0	0
CTGCCAACTATTCTTT	ref_5937_new	18	64	13	19	68	18	44	20	62	17
TCCGCTCTATAGACAT	ref_5937_new	22	16	25	18	23	21	25	25	32	29
CTGGATTCATTGCTCC	ref_5937_new	3	4	14	2	6	4	4	3	5	2
TCAAGCCTAGCTACTT	ref_5937_new	12	6	9	14	22	14	18	10	23	7
TATTCTTTTTTGAATC	ref_5937_new	17	9	14	18	15	8	13	11	13	15
TGAGTATACCGTGTGG	ref_5937_new	48	44	66	58	43	59	41	54	41	48
CATCTACTAGATTTTC	ref_5937_new	21	19	30	21	21	30	23	25	23	20
CAGGGCGCTCAGTCTT	ref_5937_new	25	40	45	32	41	31	46	21	41	31
CTGAAGTCTTTGCCTT	ref_5937_new	45	52	42	30	45	32	50	31	28	30
ATCAGTGTCTATGGGA	ref_5937_new	7	2	9	6	7	11	5	7	7	3
AGATATGCTGACTTAT	alt_5949_new	36	53	43	34	58	36	46	32	44	31
GCGTTGTTGTGGCTAA	alt_5949_new	7	2	5	2	4	0	8	1	3	4
GGATGTTTTTGTTTGA	alt_5949_new	32	39	39	26	47	38	44	39	31	32
AAGCTCTGCCATCGTG	alt_5949_new	19	31	25	12	29	21	54	18	54	21
AGACAGGTCATCGCAA	alt_5949_new	17	34	28	29	24	13	33	26	33	14
ATTTTTGTAATCTTTG	alt_5949_new	24	35	31	23	17	13	24	16	36	19
AAGCGCCATCATCGCG	alt_5949_new	25	27	29	26	23	20	25	14	34	18
GATAAGAGTAGTAGTT	alt_5949_new	22	31	13	13	19	13	21	20	29	17
CATGCCGCCTTTACTG	alt_5949_new	7	9	3	1	7	4	8	2	8	7
ACATGCCACTAAAAGG	alt_5949_new	9	5	6	4	6	7	10	5	9	7
ACCTTTTCCTGTACAT	alt_5949_new	53	85	72	53	83	37	73	30	70	51
TTCGTTAGGAGGGATT	alt_5949_new	6	10	8	11	21	3	13	5	15	4
GCTGACGATATTCTAC	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TCAAGCTTTGCAAGTA	alt_5949_new	0	0	0	0	0	0	0	0	0	0
GTTTCTTGCCGTATTC	alt_5949_new	13	19	20	12	9	5	25	8	13	13
AACAGAAAGATATATT	alt_5949_new	9	11	8	14	11	9	22	10	9	11
AAGATGGTCCCCGCGG	alt_5949_new	12	7	10	8	15	2	13	9	13	9
TTCGCGCTATGGCAGA	alt_5949_new	44	44	70	51	60	31	63	42	66	44
CGCTCCATGAGTACAA	alt_5949_new	0	0	0	0	0	0	0	0	0	0
AAATTGTGAACTGGAA	alt_5949_new	17	9	18	13	18	7	15	11	24	12
AGTGACAGGTCCACAA	alt_5949_new	8	10	3	4	11	5	12	9	8	10
ATCCGACTTTGCCAAG	alt_5949_new	3	11	5	7	10	4	9	4	8	3
TTGCTTATCCCTTGAA	alt_5949_new	17	18	10	11	30	21	19	10	21	11
CATGAGAGTTCATCTC	alt_5949_new	19	24	15	19	29	13	22	25	29	16
TCCTCCAATGTGTCTT	alt_5949_new	4	4	0	1	7	0	3	3	7	2
TCGAAAGGGCCTGGTA	alt_5949_new	0	0	0	0	0	0	0	0	0	0
GTACCGGCCCTATTGT	alt_5949_new	0	0	0	0	0	0	0	0	0	0
GAGTTGGTGCCTTTCC	alt_5949_new	7	2	3	2	3	4	4	2	1	0
TAACATATGTTCCATT	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TATGTCATCAGTGCGC	alt_5949_new	20	27	22	17	15	17	17	18	21	16
TGTCGTTTAAGTAGGA	alt_5949_new	5	7	14	9	9	7	17	8	17	10
CCAACTGATAGAGAAG	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TTTCCTAGACGCTATC	alt_5949_new	82	143	83	88	155	75	137	69	165	74
AAATGTTCCGACATAT	alt_5949_new	18	31	22	14	33	25	31	16	28	15
CGGATCGGGGGTAGTG	alt_5949_new	0	0	0	0	0	0	0	0	0	0
GCAATTTCCAGGCGTC	alt_5949_new	54	51	49	48	83	50	69	57	71	27
GATGGTGCTGGTTTCC	alt_5949_new	58	82	69	67	94	66	76	35	93	47
TGGACTGTCACAAACG	alt_5949_new	20	30	25	16	43	26	37	23	41	19
ATGTTTGGATATTAGT	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TGGCACCATTTCTTGT	alt_5949_new	0	0	0	0	0	0	0	0	0	0
CCAGAGTGGTATCAGG	alt_5949_new	0	1	2	0	0	1	0	0	1	1
TGTACAAACTCACACC	alt_5949_new	2	11	6	10	12	10	13	4	15	3
CCACAGCAATATTATT	alt_5949_new	5	7	6	4	19	8	6	8	13	3
CCCTAGCAGGCTCACG	alt_5949_new	4	11	5	11	13	7	10	8	23	4
ATATTCTCTAGACTGT	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TTGCTTTGTGTAGACG	alt_5949_new	0	0	0	0	0	0	0	0	0	0
GAACCCGTGGCTGGCA	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TTGAAATTTGTTGTTA	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TGAAACCCGCGACCGG	alt_5949_new	6	7	5	8	19	5	20	12	17	8
ACCGTTCGGCACGCTT	alt_5949_new	24	37	33	37	40	25	37	32	43	24
TTTTGGAGGACCGTTG	alt_5949_new	41	61	52	35	64	23	78	48	66	25
GCTCAGTGTGTCGTTG	alt_5949_new	0	0	0	0	0	0	0	0	0	0
TCGTCATAGAATGAGC	ref_516_upstream	104	199	121	88	231	95	237	106	224	89
TCAGTCTTGCAGGTAT	ref_516_upstream	12	19	17	9	23	8	31	7	16	5
GCGGCTTGCTAGATTA	ref_516_upstream	23	31	27	22	44	16	51	15	41	18
GTGGATCAAATCCATG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTTCGATCAAAAA	ref_516_upstream	16	53	10	10	42	7	51	13	46	10
CAATGAGGAGAAGTCC	ref_516_upstream	48	78	58	37	99	62	104	37	105	45
TTTAGGTCGAAGCCGC	ref_516_upstream	14	30	18	23	67	16	66	19	69	27
CGTGGATTGTGCGTAA	ref_516_upstream	28	47	24	24	59	24	61	26	49	15
AGTGTTACTAATTGGT	ref_516_upstream	4	14	8	6	17	6	13	10	5	6
AATGAACGTCCAGGCG	ref_516_upstream	5	8	2	3	6	2	1	1	2	2
TGCCATGCTGATAAAT	ref_516_upstream	6	22	8	9	23	3	32	13	32	3
CGCACCCTAGTCATCG	ref_516_upstream	32	69	37	41	97	34	73	29	69	33
CGCTGTTGGGAGTGCC	ref_516_upstream	3	13	5	8	11	1	8	3	11	3
AATGGAAATGGAAAGT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
CAAGCCATACTCTTCG	ref_516_upstream	12	48	5	7	34	10	38	17	57	5
GCACTTGTCAGCAGGC	ref_516_upstream	1	4	0	0	2	1	4	2	5	1
GTGGGATACAGCTTAG	ref_516_upstream	12	48	21	20	65	18	39	22	62	21
GCTGCTCTTAAGTCTG	ref_516_upstream	11	30	20	9	30	17	47	25	42	13
AAGCAATTCAGCTGCA	ref_516_upstream	32	71	53	40	87	28	109	28	95	39
CTAAGATTAGGCCGAA	ref_516_upstream	37	67	45	26	65	26	69	21	94	36
GTCTTTACCTACCGCC	ref_516_upstream	2	1	0	2	1	2	3	1	4	1
GCACTCTAGAACAGTT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCACTTAGGATT	ref_516_upstream	3	12	11	5	16	5	21	9	20	9
TCCCCAACGTAAAGAC	ref_516_upstream	3	6	1	4	8	4	11	4	4	0
GCAATCTTGGGATCAA	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
CCGACTTTGCTCCCAG	ref_516_upstream	24	32	20	17	40	19	37	16	42	19
TGAATGTTGCTACTGC	ref_516_upstream	11	22	12	12	21	9	24	13	37	5
CTTGTGCGCCTTATAA	ref_516_upstream	35	66	30	16	74	27	69	28	52	24
TTGACGTACTCTTTGC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GAGATGCAAATATGAG	ref_516_upstream	20	26	11	9	33	16	33	16	36	11
ATAACCTACGTTGATC	ref_516_upstream	2	8	4	12	9	3	13	2	11	5
AGGCGAGTCTGGGCCA	ref_516_upstream	16	43	18	17	23	11	42	12	26	7
CTCACGGCGAACGAGC	ref_516_upstream	24	47	22	26	29	20	50	29	41	10
GTTCCGTCGGCCAATG	ref_516_upstream	25	83	23	39	72	33	77	15	85	18
CATACTGCGTAAGCTT	ref_516_upstream	200	321	240	187	345	181	313	195	340	181
TCTGTTGCATCATTAT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TCATAATCATTTGTGA	ref_516_upstream	1	3	4	1	9	3	3	3	5	2
TCTTTTATGCTTGTAT	ref_516_upstream	12	34	21	16	35	10	33	14	27	20
AATGTACAATGGACAA	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TCCGACTTTGGGTGTT	ref_516_upstream	5	23	5	13	6	8	16	7	29	6
GACGCCCCCGGTAACT	ref_516_upstream	5	36	18	13	38	10	33	12	39	18
CGACTCTGTTTGGCAT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TACGGGTGATTCGGTT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTCGTCACTTCTC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCCTTTTCCTACC	ref_516_upstream	25	43	14	20	35	18	41	13	39	13
ATTCAACCGCGGGATT	ref_516_upstream	29	75	51	23	52	33	53	21	72	17
CTCACTAAGATGGTAT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGAACGTGTGCAC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TACGCCAGGGTGCAGG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
CGAGCCCAAACATCTC	ref_516_upstream	21	25	20	21	28	7	40	14	33	15
TTTTTGGTGTCATATC	ref_516_upstream	10	24	14	11	24	10	27	10	23	12
AGGCACGTTTCCTAGA	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTCCCTCACTAGG	ref_516_upstream	11	23	15	12	45	12	39	8	24	8
AGATAGGTCTGGCCGT	ref_516_upstream	8	28	10	12	22	11	28	10	25	15
CGTGATTACGTAGTTA	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TATTACTACTCTATTT	ref_516_upstream	21	32	31	23	50	18	46	16	58	19
TTGTTACAGTCTTACC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCTCATGTCTAGG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GGCGAAATCGCGACCA	ref_516_upstream	30	50	27	20	59	26	42	22	50	17
TCGAGATCTACCTTCG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGAATCTTATTCT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
CAGCACCGGGAGAAAA	ref_516_upstream	27	38	17	20	43	13	33	21	45	16
AGTCTGAGGATATCTT	ref_516_upstream	11	33	14	11	23	12	25	17	27	8
ACTGTTGTTCCGTTCC	ref_516_upstream	2	5	4	3	11	1	3	0	2	3
CGCTTCTATGGCCGGT	ref_516_upstream	9	15	11	11	15	4	13	8	14	4
GAGATCCCTACGGACT	ref_516_upstream	12	19	7	10	17	6	20	12	14	14
ATTCCTGTTTTATCGG	ref_516_upstream	10	17	4	6	22	7	12	9	23	4
ACCAGCACCTGCCCTG	ref_516_upstream	4	33	6	7	34	10	28	3	39	4
CGCGCATTGATTCTTG	ref_516_upstream	2	4	2	7	13	1	10	2	5	2
TGGCCCGCGGGAATCT	ref_516_upstream	8	24	13	17	27	14	26	15	30	6
CTGTGCGAATTTCGGA	ref_516_upstream	5	7	8	3	10	8	9	6	13	3
GATTGTACATGGGTAA	ref_516_upstream	17	23	18	10	36	16	35	12	26	10
GCAGGTCCTGCAGGTC	ref_516_upstream	22	48	29	36	70	27	60	23	71	19
TGTTTGCGAACAGGAC	ref_516_upstream	14	14	15	16	43	11	32	14	27	13
GCTTTGTCAGGATTCG	ref_516_upstream	5	9	6	2	9	6	9	7	12	3
ACTATCGCCTGCGGGA	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTTGTTGGTTTC	ref_516_upstream	10	17	12	9	19	7	19	8	14	2
CCGTTGGGTAGATGGC	ref_516_upstream	30	50	33	30	54	20	33	17	60	24
TAATAAGCGCGCCCAT	ref_516_upstream	4	8	6	10	14	5	7	5	7	4
ACGATATATCCATGCT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TTATTCTCACTCGTTA	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTTCGCATCTGC	ref_516_upstream	10	39	16	8	27	6	20	11	29	11
CATAGGTCATTGTTTA	ref_516_upstream	13	26	6	2	28	8	26	10	27	7
CGAGTGTTCCAGCCTC	ref_516_upstream	5	7	2	0	8	0	10	5	5	6
GAGATACCGGACACTG	ref_516_upstream	8	8	3	13	6	3	14	3	20	8
GGGTTCAAGACGTTAG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGGGTCGAATGCG	ref_516_upstream	10	16	16	11	29	15	31	16	28	8
TTTTACGGCGTCATTT	ref_516_upstream	7	5	4	2	9	4	9	3	7	7
ACATGGAAGTACGTGA	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
AGAGCTCAAAATGCGG	ref_516_upstream	12	40	27	21	28	12	29	21	34	14
AGGGTCACCATTCTTC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTAGGACTCTAAC	ref_516_upstream	13	29	7	7	28	14	39	18	29	10
TCTTAAGGAGTAAGTA	ref_516_upstream	17	38	26	14	44	22	47	24	44	25
GTCCCCTACGTTGTCG	ref_516_upstream	27	56	19	25	60	14	61	16	60	21
GATGTCTAGGGATACC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTCAATTCCTAAG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TGAATTTGTATAGCGA	ref_516_upstream	20	36	15	11	31	8	34	14	39	9
GATCGCGTTCATCAAC	ref_516_upstream	4	11	5	8	10	10	21	6	17	4
AATGGGAGAACAGTTG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGGCCATCCAGC	ref_516_upstream	6	33	8	8	22	5	25	9	32	7
TTCCTCCCGGTCTAAT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTGTGCCACCAC	ref_516_upstream	21	45	24	18	46	12	57	15	43	16
TGTTTCGCTTGGTGCT	ref_516_upstream	9	19	12	4	13	5	19	13	20	4
ACTATCTCTTCCAAGA	ref_516_upstream	46	89	51	35	75	26	94	41	85	39
CGTGGCACATTTTTCT	ref_516_upstream	61	124	53	41	101	54	97	37	102	46
TATACATAACTGGCGT	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GGCAATTCTGGTGCCG	ref_516_upstream	3	9	2	7	16	4	17	5	7	5
GTAAAAATAACCCGTT	ref_516_upstream	2	1	0	0	0	0	0	0	1	2
TCTTTCGTTTCTGAAC	ref_516_upstream	14	47	24	18	58	17	42	10	44	7
CGGTTCGCTAGACTGT	ref_516_upstream	58	110	69	50	115	35	137	45	127	59
CACAAGGGCGTCTCTG	ref_516_upstream	14	29	27	16	29	10	36	17	33	21
CACTGGCGAAGTGTAC	ref_516_upstream	27	70	32	20	68	17	50	18	53	26
TTGACCTTTCCCGAAT	ref_516_upstream	38	60	41	31	81	40	68	31	82	36
GCGCCTTACGTCTTCT	ref_516_upstream	9	25	14	10	23	11	32	9	26	10
AAGCTGCATATGCGGC	ref_516_upstream	23	37	29	24	51	14	44	15	63	17
TTTTATTATTCTAGAC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GACAGCCATCCGTAAT	ref_516_upstream	3	38	10	7	46	7	53	10	62	6
CGCGGGCATAGTTTCT	ref_516_upstream	7	17	12	18	25	8	19	8	18	12
ATTAAGATTTCCGCGT	ref_516_upstream	5	9	7	12	11	5	11	3	10	4
CTAAGAGCGCTTGACC	ref_516_upstream	12	54	22	15	67	23	42	12	68	22
AGCTCTTGCCAGCCAC	ref_516_upstream	5	10	4	4	11	4	8	2	20	4
GAAATTTTGAAGTAAC	ref_516_upstream	12	14	8	7	20	9	18	16	36	13
AAATTTTACTTATCAA	ref_516_upstream	15	27	10	17	33	12	30	8	20	9
GTTTTTACTGATTTCG	ref_516_upstream	11	31	15	19	31	15	28	8	34	14
AACTAATCTCAAGTGC	ref_516_upstream	5	5	1	1	6	4	4	1	5	0
TCAAATATCCCATTGT	ref_516_upstream	13	34	24	12	45	16	33	10	62	18
CGCACAAATCTACCCG	ref_516_upstream	0	0	0	0	0	0	1	0	0	0
GGTCTTGCTACTGCCC	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
CTGGGGTATTCCCCCG	ref_516_upstream	0	0	0	0	0	0	0	0	0	0
GGCGATACCTTGAGAT	alt_1635_missing	1	10	3	5	4	5	4	5	6	2
TGAGTTCGCGGTACGC	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TAGAACGGCACGAATA	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CAGCCGCGGTATGTAG	alt_1635_missing	2	8	6	3	9	3	8	5	11	5
GGCACCGTCAGGACAG	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TCTTATGTATTGGGCA	alt_1635_missing	13	19	16	9	27	9	14	10	16	11
TCATTTTCGCAGCTTT	alt_1635_missing	17	34	14	15	37	22	40	15	22	16
GAATTGATCTTGACAG	alt_1635_missing	14	15	8	8	23	12	17	6	16	13
TCTTATCATAAGTCTT	alt_1635_missing	10	12	3	6	13	4	5	5	10	11
GCATTCGCAAGCGAGG	alt_1635_missing	21	39	31	37	49	39	43	24	39	26
TGACCATGATGCGGCG	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TGGAATGTTACACCGT	alt_1635_missing	2	0	1	0	3	0	4	0	4	0
CGTACTCAATAAATGC	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CAACTACTAGAGATGT	alt_1635_missing	36	43	45	33	39	30	66	32	73	29
CTAATTTCTGCCGTTC	alt_1635_missing	19	16	22	11	16	11	31	8	20	11
CCATGGCGGAGATTGG	alt_1635_missing	100	155	112	86	127	77	127	106	127	87
TGACCGGTATAGCAAA	alt_1635_missing	54	64	60	43	64	53	65	55	63	37
GAATCCCCCTGATGGT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
GTCTACTGACGACACC	alt_1635_missing	36	33	28	29	59	31	43	34	48	25
ACTCTTGTGTCAGTTT	alt_1635_missing	7	10	11	5	15	5	14	9	11	6
TTTTTACTTCGAGATA	alt_1635_missing	30	27	32	32	38	22	37	30	46	24
GGTATCGCGTTCGTCA	alt_1635_missing	6	8	7	4	8	5	5	4	10	7
GGTGACGAATATGGTT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
GCATTCATTTTCAGGT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TGGTTCAGTTATTCCT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TACAGGGTCAAAGTTG	alt_1635_missing	31	32	24	21	35	26	27	18	37	32
GAAATCGGACACTCCA	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TATTCAGTTCTGAATT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CGCGCAGTTGTCGTGT	alt_1635_missing	13	12	17	11	21	8	13	13	24	6
AATGTCCTTTGAAATA	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TGTAGCGCAATCTTTA	alt_1635_missing	31	47	43	49	48	31	55	33	50	41
TAAATCGTTGTAGGCC	alt_1635_missing	24	31	33	29	25	21	32	13	37	26
ATCTTAAGCTCTGTAT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TATTACGGTTCTCTAG	alt_1635_missing	39	58	38	33	47	39	57	32	74	21
TCCATTGGGCATAAAA	alt_1635_missing	12	13	13	5	17	8	14	12	19	5
AATGTGCGTGCCTCTG	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CAACTTTCGCGCATGA	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TGTAGGTTAATTAATT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
GTTTAAACCGCTCGAT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCTTTATCGGGA	alt_1635_missing	8	9	15	7	13	15	10	12	12	14
ATCGCGTGGCCAGTTT	alt_1635_missing	2	1	4	2	7	5	0	0	3	2
GTCATCGGAAAGGCGA	alt_1635_missing	28	34	16	14	30	20	27	24	43	16
TTGTTTTATTTCAGCT	alt_1635_missing	16	58	23	31	31	19	44	25	38	23
CTCCGTCTTAGTCTTA	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TTAGATGCCCAGGCCG	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TAGAAAAGCGTGTGTG	alt_1635_missing	9	12	4	5	6	6	17	3	20	4
AATGGTCACCACACAT	alt_1635_missing	8	23	15	14	18	5	15	5	16	4
TCCAGTGCTCAGGGTA	alt_1635_missing	44	58	52	53	98	51	64	54	98	57
ATCCGAATTCATTGCT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CCTTAAGTGCGCCGTG	alt_1635_missing	17	30	34	27	31	20	37	26	60	26
ATTCGAGGGCCAGTTA	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CTGACGGGCAGTCTAT	alt_1635_missing	76	90	79	92	91	60	118	63	110	86
TTGTATTGTCATGCGA	alt_1635_missing	16	22	15	9	25	8	31	13	20	15
TAAGCTAATGCTAAGC	alt_1635_missing	8	13	7	15	9	9	9	5	9	10
AGTATTAGGCGGTTAT	alt_1635_missing	2	5	2	3	4	6	9	2	11	7
TGGTTTATGTGGACTA	alt_1635_missing	6	13	8	7	6	4	7	9	11	9
CTATCTTATTGTTGTC	alt_1635_missing	37	38	29	27	38	26	42	27	45	28
TCTCGGGGTCCTTTCT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
GAAGTGACCGCCCGTT	alt_1635_missing	13	19	11	15	15	4	14	12	16	3
CTAATTTTAGTGTTGA	alt_1635_missing	4	5	3	4	9	4	12	3	9	5
TTCATTTTAAGGTTAT	alt_1635_missing	28	43	30	12	47	33	44	22	51	23
CGAACGCTATCGCACG	alt_1635_missing	20	29	23	24	33	15	29	13	36	20
ATTTAGAACGTCGTTA	alt_1635_missing	3	2	2	3	5	2	8	3	3	4
CGAACCCAGACCACAG	alt_1635_missing	7	25	16	3	30	16	31	19	26	7
TTGTAGGTAGGGAGGT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CGTTTCCCTTTATTTC	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CAGTCCTTCCTACATT	alt_1635_missing	88	130	96	95	167	58	156	86	164	90
ATCGCGACCGTTCGTC	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CCAATAAAGTATATAG	alt_1635_missing	9	20	5	13	18	6	25	9	17	6
GGGAGCTAGCAAATAC	alt_1635_missing	54	88	46	57	55	43	79	40	78	42
TGTCATACGTGCCACT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
GCGCCTGCTGATATTT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CTCCCCTTGAAATTGA	alt_1635_missing	9	97	6	6	97	12	98	11	105	14
GCAAATGACTCTCCCG	alt_1635_missing	39	66	34	27	56	30	61	28	68	29
GGACTCGATTCCTGGA	alt_1635_missing	42	35	47	22	43	36	49	31	43	31
TCTCTCCGTGCCAGTT	alt_1635_missing	49	115	69	43	92	47	125	61	111	37
TTCCATGTATGATTGT	alt_1635_missing	18	24	17	10	14	25	26	9	14	6
TCTTCAGTGATTGCTT	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
CATTATGTTATTGTAC	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
GTTTTCCGTTTGAGTT	alt_1635_missing	4	17	14	26	17	11	17	15	13	8
CCCTGTTTAAGCTCCG	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TTAACCCTCTGGAAAC	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
GGCGATGAATGAACTC	alt_1635_missing	25	18	18	23	23	23	42	15	29	16
CAGGGTGTAAAAACGT	alt_1635_missing	13	20	20	8	32	20	19	14	41	18
AATTAAATGTTCTTGG	alt_1635_missing	0	0	0	0	0	0	0	0	0	0
TCGGTTCAGTTACGCT	alt_1635_missing	4	26	6	7	26	5	24	7	24	8
TTCGGGCATATCCAGA	ref_4170_fdr	50	28	44	34	20	45	27	39	27	42
CACATATGCACAGTGG	ref_4170_fdr	35	30	57	63	42	50	30	49	43	59
CGTTTAATTAATTTGC	ref_4170_fdr	19	6	20	11	13	10	4	11	12	11
TTGTTAATCCATAGAT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
TGACTTCCTGGCTCTA	ref_4170_fdr	79	57	115	72	62	81	63	68	53	71
ATATATATACGGACTG	ref_4170_fdr	0	5	0	1	4	1	7	1	6	3
CATTTTCTTCTGCCTC	ref_4170_fdr	4	4	12	3	3	3	1	6	1	1
GATTACTGTTAGTGTA	ref_4170_fdr	194	104	210	140	101	158	111	140	113	125
AGTCATTTCTGTCAAA	ref_4170_fdr	0	0	3	1	2	1	2	0	1	6
ACCAATGCAGATTCTA	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CTGCATCCGGCGACTC	alt_4170_fdr	76	61	81	91	45	72	50	81	55	68
TGAGCCGGACCAGCGT	ref_4170_fdr	16	12	24	18	6	23	14	23	16	11
ATCCCGATGTTCTATG	ref_4170_fdr	84	79	91	84	69	66	84	63	68	72
TAGAAGCAAAAACCAA	ref_4170_fdr	35	37	59	49	47	42	40	44	27	54
CAAGGGTCTTTCGTTG	ref_4170_fdr	4	4	4	6	1	4	0	0	1	1
CGCGCCCAGCCTCAAA	ref_4170_fdr	30	19	29	46	29	28	31	30	37	32
CCTAGAACTCAAATCT	ref_4170_fdr	20	15	26	18	24	28	11	13	10	23
CTCTGTTCAGTGTAAA	ref_4170_fdr	321	213	357	348	222	300	240	242	224	269
TCACACAGTGTTATTG	ref_4170_fdr	87	39	83	63	53	64	50	64	57	61
GCCCTCCCATTGCAGA	ref_4170_fdr	37	15	48	47	22	46	24	22	19	38
GCGACACTACCAGAGT	ref_4170_fdr	121	99	151	125	100	103	95	89	89	103
AACGGTCAGATGTAAT	ref_4170_fdr	69	33	85	74	41	65	41	57	52	48
ATGGCAGGCTTTGCTT	ref_4170_fdr	75	35	73	55	44	58	44	62	34	64
TTCCGTAGAAGATTCG	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTTCATCGGGGT	ref_4170_fdr	18	5	6	9	6	16	5	13	11	12
CTACCTGAAGAGGGTA	ref_4170_fdr	96	67	108	101	60	90	73	98	73	73
GCGCTCTGAAATTTCT	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
AATGACGTTTTGTCCT	ref_4170_fdr	77	52	106	79	26	75	35	55	37	76
GGTCGCGCCGAAAATC	ref_4170_fdr	25	15	29	13	12	17	15	14	12	25
TATAAGCTGCGTTACT	ref_4170_fdr	114	44	129	90	80	100	71	103	69	105
TTTGAATTTTCGCGTT	ref_4170_fdr	52	30	71	42	28	55	40	41	30	52
ATAGCGTCCTGGCTTC	ref_4170_fdr	27	20	27	24	26	30	14	25	20	27
CGTTTCAAGGCCGTTT	ref_4170_fdr	86	58	73	67	50	39	53	50	51	64
TCTCCTACTTATTATG	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
CCAACGGAATTCCAGT	ref_4170_fdr	17	5	9	9	5	8	5	6	15	7
CCCATAATGTCCTTTA	ref_4170_fdr	221	352	328	299	340	259	371	302	346	255
CCGCCTTGATTGCAGT	ref_4170_fdr	134	110	164	152	98	160	109	133	106	148
ACTAATGTACTTTAGC	ref_4170_fdr	99	68	142	93	75	103	86	96	94	78
ACTCGGCCCGGACTTG	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTAGTCAATATGG	ref_4170_fdr	27	23	53	32	13	32	22	40	17	40
TCTGTATCAACCGCTG	ref_4170_fdr	5	9	7	6	10	5	6	7	1	7
GCCGCGTTCGTGGATA	ref_4170_fdr	16	3	31	16	14	14	14	25	12	18
CTTATTCGGTGATTAA	ref_4170_fdr	73	38	76	67	53	60	55	68	58	50
CTGCATCCGGCAACTC	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTTTGGGTACAA	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCTGAGATTGAA	ref_4170_fdr	92	74	118	84	63	99	52	80	60	85
TTGGCCACCTGGAAAA	ref_4170_fdr	6	4	11	2	3	6	5	6	7	4
AGGAAGGAACCTCCAT	ref_4170_fdr	168	76	176	151	77	155	90	115	79	145
TAATAGGGCACTTCTC	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGTGTATTCCAA	ref_4170_fdr	134	72	150	121	86	121	101	138	91	137
TTATGGGTTGTTGTCC	ref_4170_fdr	5	4	9	20	4	8	8	7	5	11
ACGTAGTTTTCGCGAA	ref_4170_fdr	72	28	45	34	20	47	24	36	15	33
CGTTCCCCTCCGTAGG	ref_4170_fdr	103	80	142	125	98	114	79	104	91	104
GCTCAATTCGTGCTTT	ref_4170_fdr	71	44	79	92	37	70	42	72	37	67
TGCGAACCTATTCCCC	ref_4170_fdr	11	6	4	5	6	6	6	11	5	3
TGACAAAGCAAGTGGT	ref_4170_fdr	103	65	152	133	60	96	74	111	81	101
AGTTTGTTTTTCTAGT	ref_4170_fdr	23	9	27	29	21	32	15	23	13	31
GGATTCTTGGATAGGG	ref_4170_fdr	37	20	43	26	22	21	22	29	14	29
TGACCCCCGTACTATG	ref_4170_fdr	129	58	125	125	86	132	80	111	66	98
CGACCTGGTGAGTTAG	ref_4170_fdr	23	22	29	31	13	22	17	20	17	14
CCCTGTTATACTGCTT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGGTTGGACATGT	ref_4170_fdr	21	17	36	32	27	31	11	24	19	22
GGCTCGCCCATCCGTA	ref_4170_fdr	28	16	44	43	20	19	22	30	23	29
ATTTTACCTTAACGGG	ref_4170_fdr	96	55	113	98	72	107	75	98	59	81
ACTGATCCGTATTTTT	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGGGATTCCGCAG	ref_4170_fdr	37	24	26	30	16	42	24	30	20	20
CAGTTTTTTCTATTTT	ref_4170_fdr	46	24	61	41	26	37	23	41	23	39
CTCTAGATCCAGTTTG	ref_4170_fdr	70	36	76	53	43	56	42	57	47	49
GCACTTGATCGCTTCT	ref_4170_fdr	22	12	25	29	19	17	23	18	16	15
CTGAGCCGTGGATAAT	ref_4170_fdr	54	19	59	55	31	52	31	50	49	57
GCTGTCTAAACCTTTC	alt_4170_fdr	161	84	168	145	97	163	81	147	101	125
GGGCACTTGCACGATT	ref_4170_fdr	100	100	166	140	80	119	77	110	97	100
TAGATATCTTATATGG	alt_4170_fdr	97	48	96	88	58	93	47	82	57	76
AGAAAGATCGAGGCGG	ref_4170_fdr	299	184	384	394	197	328	192	331	217	302
GGTCCCTCAGTTTCGC	ref_4170_fdr	20	11	18	21	6	7	7	21	8	19
TGCATGTCTGTTACGG	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTGTTTTTGTGAC	ref_4170_fdr	24	22	43	35	31	19	51	18	37	15
GGAATTTGCCTTCAGC	ref_4170_fdr	6	6	11	6	7	12	10	13	10	5
TAATTGATACCAGAAA	ref_4170_fdr	157	117	213	184	123	180	136	168	125	173
ATTTCCAACGTGTAGA	ref_4170_fdr	36	13	50	29	19	32	9	23	12	40
CATCGTCTAGCGCCCC	ref_4170_fdr	63	49	84	65	72	72	57	75	77	54
AATTTCTAATGACGCA	ref_4170_fdr	93	43	102	100	55	81	55	92	49	73
CAGATCCACGGCCATA	ref_4170_fdr	124	61	130	125	83	113	67	98	62	123
AACATCCACGATCGCC	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAGTTTAACCCGC	ref_4170_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGTCCGGGCATCT	ref_4170_fdr	15	22	15	19	21	20	21	26	8	10
TTGTGGAAAGTAGGGA	ref_41_missing	8	12	13	14	17	13	8	14	16	16
CCGAGACAGCTGCTCT	alt_41_missing	50	51	72	84	63	71	49	77	70	51
CTATGTATGCGCTCGG	ref_41_missing	223	138	220	208	168	172	174	176	197	176
TGAGATACTTGTTGGA	ref_41_missing	71	69	110	69	88	84	87	74	72	75
GGTTAGGTGTGTACGA	alt_41_missing	0	0	0	0	0	0	0	0	0	0
ACCGGCGTTTTGTCAT	alt_41_missing	16	14	26	13	19	19	18	19	21	8
CGACATACGGGAACAC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TCAGTTGCGACTGTTC	ref_41_missing	41	39	25	30	33	20	26	20	43	23
GGACCCGCAAACATTC	ref_41_missing	4	10	14	14	9	10	5	16	9	10
GTTGAGGCTTTGGAGG	alt_41_missing	0	0	0	0	0	0	0	0	0	0
TACGAACAGTAGACAC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TTATCAGATCTTAACT	alt_41_missing	0	0	0	0	0	0	0	0	0	0
CACTACTATTACCTAT	ref_41_missing	83	101	101	95	99	84	95	72	100	80
GCCACCTTCGTTTCTT	ref_41_missing	9	18	23	22	25	24	27	23	30	15
CTGGATATTGTCTCTC	alt_41_missing	45	26	37	49	28	35	34	32	34	37
GCTAGCCAGGAGGATC	alt_41_missing	7	22	28	16	20	20	23	17	27	15
GCCTATGTTAGCTACC	alt_41_missing	0	0	0	0	0	0	0	0	0	0
TTTTCCGTAACGGGGT	alt_41_missing	0	0	0	0	0	0	0	0	0	0
CAAGCGGAGACGATAA	alt_41_missing	0	0	0	0	0	0	0	0	0	0
ATGGACTGTTACAGTT	alt_41_missing	31	24	36	34	33	27	19	25	17	23
AAGTGCGCATTGTATC	alt_41_missing	6	10	12	13	10	9	8	7	10	11
TCTTGGTTATATTCTC	alt_41_missing	0	0	0	0	0	0	0	0	0	0
GCAAGTTCTAGGGGCT	ref_41_missing	19	19	26	15	13	14	14	25	17	19
CTACTCGTTAACGTGT	alt_41_missing	0	0	0	0	0	0	0	0	0	0
TTGGACCTACCTACAC	alt_41_missing	16	44	34	20	37	18	42	31	43	23
ACAATGTATTATAAAT	ref_41_missing	0	0	0	0	0	0	0	0	0	0
AGATTGTCCGAGTAGG	alt_41_missing	30	30	38	23	15	23	23	21	23	22
ATTCAGCATGTGTCAT	ref_41_missing	230	177	260	200	195	185	175	201	184	181
TAGGGCCTCCCGCTAA	alt_41_missing	0	0	0	0	0	0	0	0	0	0
AGTATATGATCCTTAT	alt_41_missing	7	4	9	5	4	1	4	4	4	5
ACTGGACGGCTGATGA	alt_41_missing	0	0	0	0	0	0	0	0	0	0
GACTTTTGTGCTAGGT	alt_41_missing	10	11	23	11	19	16	9	20	15	10
TTCCTCCTTTTGCCCA	alt_41_missing	47	47	40	46	36	52	38	53	48	47
CTCAAGCGCTGGTAAG	alt_41_missing	0	0	0	0	0	0	0	0	0	0
CCCACTTGTACATCCC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TTTTCGAATGCTTCCT	alt_41_missing	16	14	16	25	14	17	9	16	15	6
GAAATATTCCACTTTG	alt_41_missing	72	62	84	79	45	47	49	73	63	68
ATACCTTGGATTTGGT	ref_41_missing	30	22	19	34	18	13	28	23	22	17
CGACAAAGGGGAATTC	alt_41_missing	1	3	4	1	3	4	3	1	2	3
TGAAAGGTCAATAGCT	ref_41_missing	25	16	26	28	23	24	9	9	9	18
TACGTTTTCTTTCGAA	alt_41_missing	0	0	0	0	0	0	0	0	0	0
TATGCGCCATTGTTCC	alt_41_missing	34	33	29	39	16	28	25	26	20	38
TAAGATTCTAAGAGGG	alt_41_missing	0	0	0	0	0	0	0	0	0	0
TGAGAGTTAACACTCA	alt_41_missing	38	38	41	40	42	54	55	42	51	32
GTGCATACTCTTGCGT	alt_41_missing	23	18	17	18	15	16	23	11	21	11
GTGCGTGGCTGTGTTT	alt_41_missing	0	0	0	0	0	0	0	0	0	0
GTCAATAGCTGGGCTC	ref_41_missing	21	13	35	30	18	41	24	20	21	24
TCCTCCCAGCTGTTCA	alt_41_missing	41	41	41	34	25	33	26	31	30	35
TTGTAGTTCCTGTTTC	alt_41_missing	11	5	4	6	5	5	6	6	3	5
CCTCAGTGCTGGGCCC	alt_41_missing	0	0	0	0	0	0	0	0	0	0
TGATCCTCCTAACCAG	ref_41_missing	35	43	40	31	24	43	25	22	24	20
TTCTCAACCGACTATA	alt_41_missing	0	0	0	0	0	0	0	0	0	0
TTCAAGAGTTTGCCTT	alt_41_missing	0	0	0	0	0	0	0	0	0	0
GGCCTCGCGGGACTCA	ref_41_missing	11	7	9	10	3	12	3	9	4	5
ATGGCTAGCTCGTGTC	ref_41_missing	24	12	24	16	22	28	18	13	25	21
TCCTTCTAGGTGGTCT	alt_3117_RC	74	23	70	88	12	59	13	78	26	69
TGTGGAGTACTGCCCC	alt_3117_RC	224	31	247	231	39	198	53	205	51	161
CCAACATAATCGGATT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TATTTCGGACACGTTC	alt_3117_RC	82	9	77	82	12	81	17	83	15	72
TCGCTGGCTATCGTGT	alt_3117_RC	53	7	46	38	7	43	3	46	4	35
CCTTTATTGACTTGCC	alt_3117_RC	456	81	519	440	75	432	70	452	94	357
TGTGAGCAGCTGATAT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GCAATGTTCTGCGCAC	alt_3117_RC	149	28	199	140	39	139	33	180	31	121
ACAGTAGGCAGCCACC	alt_3117_RC	75	19	93	97	17	85	14	89	15	74
AATCCGGTGAACGATG	alt_3117_RC	102	22	166	138	21	112	23	118	21	98
TCCCGCTGAGGGAGTC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CCCGAACGCAGTATAG	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TAGATTTTGTCTTCTT	alt_3117_RC	111	22	108	102	20	109	25	125	12	97
TTGCTAGGTACGTCGT	alt_3117_RC	158	28	155	170	30	141	24	139	24	132
AGTCCCGTGCAGATTG	alt_3117_RC	138	9	151	136	23	124	23	140	27	100
TTTAAGGCTTGTCCTT	alt_3117_RC	757	87	805	746	100	635	106	679	124	604
ACGCGGATTGCGCGGT	alt_3117_RC	69	11	106	90	9	56	12	76	12	75
TGCACTTTTTGATTCG	alt_3117_RC	582	87	700	581	83	499	97	511	113	509
GCCACTAGAAAGCCGT	alt_3117_RC	83	28	127	92	12	70	13	61	33	85
ATTTTTCACATCTTGC	alt_3117_RC	395	55	541	449	70	387	72	406	88	400
ATATGGCGTCGAAACT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
AGCTTTTTTACCTATA	alt_3117_RC	193	36	192	207	36	175	24	169	27	141
TCTACCTGTGATGTTC	alt_3117_RC	28	11	34	45	7	29	10	24	9	34
TCACTTCAGACATCCT	alt_3117_RC	281	42	373	339	38	259	44	268	45	261
ACTGTCGTTTCTCGCC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GTAGATCCTCGATCGT	alt_3117_RC	102	19	117	109	12	93	12	91	13	83
CACATCACAAGGCTTG	alt_3117_RC	378	82	448	393	73	323	72	353	71	324
TGTGAAATGACAGAAT	alt_3117_RC	2	0	2	0	0	2	0	1	0	1
TGTCCCATCTCTATTG	alt_3117_RC	254	35	312	271	47	223	49	253	43	214
AGCTGCGCGGAGTACT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CTAACGAACTGTTATC	alt_3117_RC	236	37	254	234	49	231	31	217	42	236
ACGTAGCTCCCATGTG	alt_3117_RC	112	197	177	166	181	141	204	132	199	131
CTCTGCAGTCACCCAC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GTATTTGGAGATGAAT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GTTCGGTACTACTTCT	alt_3117_RC	576	101	689	600	97	490	104	541	118	507
ACTGGTTACTAGCGAA	alt_3117_RC	139	26	183	179	26	150	28	171	29	120
GCAGCCAGAATTTTCT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CGGGTCATTCGCTTCG	alt_3117_RC	657	120	848	733	109	562	118	648	95	582
ATTCCCTTAACGGTCT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TCCCGTTTTAAATTGA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GGTGTCAAGAGCAATT	alt_3117_RC	202	39	237	201	37	200	31	185	35	186
GCTCTGGAGATCGAGC	alt_3117_RC	216	28	228	173	27	200	29	231	27	173
ACTTTGCGAGTACCGT	alt_3117_RC	46	8	63	38	3	38	13	45	12	48
GGTTTTTGTGGAATGA	alt_3117_RC	251	56	296	272	45	233	60	235	56	176
TCAGGTTTCGGCATTG	alt_3117_RC	120	19	131	120	24	102	24	111	23	96
ACGTTCTACCTATCGG	alt_3117_RC	865	160	1035	912	157	823	167	902	154	764
CCGTCATCTCTTATCC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
ATTAGTAACTTAAAGG	alt_3117_RC	124	19	168	142	26	127	27	153	16	113
GTATCGAGTTGTGCTC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TACTTACATGTCCACC	alt_3117_RC	317	58	447	344	56	324	62	304	54	303
CGCTTAATATAGGTTC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CCGTTCATGAAATTTT	alt_3117_RC	162	29	200	199	38	161	31	178	34	131
GGGGGAATACTCCAGC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GCCAAGATCTTATTTA	alt_3117_RC	83	16	105	103	22	77	17	95	12	70
TCTCTCGGGGCGTGCT	alt_3117_RC	90	15	132	112	11	75	15	91	12	88
GCCAGGGTTTATGTGC	alt_3117_RC	193	49	244	222	53	192	69	206	56	186
TCGTGCTGTAGGTAAG	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TCGTCCCTAAAGCCTA	alt_3117_RC	80	19	102	77	12	103	26	67	15	87
TGGCTTTAGACTACGC	alt_3117_RC	53	33	72	60	32	56	46	69	55	54
GTCATGTTACTTGTCA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
AAATCGATCTGGGGGC	alt_3117_RC	46	2	52	31	5	28	5	41	4	41
GAGGGACGGTCTTGGA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTTATCATTTCG	alt_3117_RC	194	29	234	181	41	214	37	198	31	181
TACCGTACGCAGTGCA	alt_3117_RC	9	4	9	1	4	5	5	11	4	11
GTTCTACCATCGCCTG	alt_3117_RC	55	12	65	52	4	43	13	52	8	44
AAACTACACATCGCAT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GCCGCTACGCGATGAT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CATGGGTAATATTACG	alt_3117_RC	259	63	351	286	32	297	29	244	35	234
TTCATATCTGTGTTCG	alt_3117_RC	166	27	186	171	20	168	28	132	30	142
GGTCAGTCCGGATGAG	alt_3117_RC	384	63	518	434	67	352	60	403	57	326
GTAGACGTAATGAGTT	alt_3117_RC	111	20	123	125	22	117	18	117	22	97
GGCACCATTCTGGGAT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GCCCTATAGACATCCG	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CGTTTGTAGTCTGCTT	alt_3117_RC	76	17	97	84	22	94	15	79	10	95
ACCAAAAGGCCGAAGA	alt_3117_RC	162	22	192	193	40	162	27	165	18	186
GTTCCCTCTGTTTGAT	alt_3117_RC	35	7	61	49	6	49	8	49	13	33
ATCCTACCCCGTATGC	alt_3117_RC	95	30	105	100	29	77	25	110	30	86
TCATCGGAATCGAACA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
ACCCCCAGGTCACGCA	alt_3117_RC	38	13	63	59	9	46	13	53	13	53
GTTCTTCCCATTTGAC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCCAGCGCACAA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GTTCGACGGCCTGGCA	alt_3117_RC	64	14	93	55	12	59	7	59	6	56
AATGGGTGGGTCTCTT	alt_3117_RC	152	20	189	179	26	158	23	147	30	149
GCAGTTTGCTAGACGT	alt_3117_RC	62	6	64	55	11	59	11	60	10	36
TGCCCTTTCTTTTCAT	alt_3117_RC	156	37	194	149	25	143	25	141	15	130
GTTTAAACTGATCGTG	ref_3117_RC	492	88	580	513	93	488	77	553	95	452
AACTTCTCCTATTGGC	alt_3117_RC	94	19	129	111	21	107	12	98	24	81
TTATAAAAAAGTTGTT	alt_3117_RC	65	10	74	59	7	66	7	77	9	58
TCTTGCTATCACTTTG	alt_3117_RC	305	43	307	295	37	234	44	254	38	241
TAGTCTACAATGCCTT	alt_3117_RC	257	61	336	276	36	246	44	255	54	221
TCGTAATGTTTTCACT	alt_3117_RC	44	2	63	44	13	59	5	46	8	40
AGTATTGCTAGTCATC	alt_3117_RC	114	10	166	156	25	139	26	137	16	122
GATGGCTTCTCCGTAC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GGGACCGGCAAATTTT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
ATTACAAGGGATTTTG	alt_3117_RC	652	107	764	660	115	595	93	686	109	551
GAATTGACGTTTGACC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GCATCGCTGCATCTCG	alt_3117_RC	53	3	43	45	9	32	12	35	5	30
TTTCTGCGGGGCTCGC	alt_3117_RC	122	20	187	126	25	117	23	122	24	117
GGCTGACTGGACCAAG	alt_3117_RC	193	24	224	210	25	155	45	156	49	164
GCTTTATTGACATCTG	alt_3117_RC	177	24	181	199	30	153	36	160	39	144
TTATCTGCCCAAGCGG	alt_3117_RC	77	9	97	87	8	71	7	65	18	70
GACCTTGGCCTGGTTC	alt_3117_RC	434	95	529	413	69	461	71	441	87	377
TTACGACGTGAACCTA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TCGATGCACTTAGTCA	alt_3117_RC	9	0	12	13	1	9	1	13	2	10
GTATCGCGCGATAGTA	alt_3117_RC	24	3	40	31	7	28	4	31	2	35
AGGACCCCAAGGTTCG	alt_3117_RC	144	16	164	144	17	141	19	130	31	115
CCGGAAGGCCTAATTT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TTGCTTGCACCGTTGA	alt_3117_RC	196	37	244	215	29	225	28	181	43	174
CGGGCGCTCGGGCTAG	alt_3117_RC	1031	173	1345	1101	175	1024	201	1058	214	910
GTATTCATTATGGTTT	alt_3117_RC	641	138	832	663	116	600	148	669	129	555
TCCATACTACTGCGAA	alt_3117_RC	194	68	289	263	78	228	89	239	58	189
TAGGCGCGGTGGAATC	ref_3117_RC	56	4	58	50	10	55	5	46	10	40
TTCGTACTATGGTGCC	alt_3117_RC	27	1	22	15	2	17	7	14	4	21
CGGTCTGTGACTTGAC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GGGTACTTTGCATACC	alt_3117_RC	311	49	324	301	52	290	45	272	53	253
CTAGCCTGTTGTACTT	alt_3117_RC	222	49	269	199	44	167	50	199	58	169
GGTTTTCGTTGTTCTT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TCCCGTTCTTAAGTCG	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GCCGATGCGGAGCTCG	alt_3117_RC	282	42	298	256	35	251	47	227	38	200
CATGCCAGACGCATTA	alt_3117_RC	23	4	32	24	5	27	4	29	4	22
GGGTACTTTGCTCTCG	alt_3117_RC	410	62	549	475	65	440	100	385	65	391
CGCACGTCGTTATTGC	alt_3117_RC	312	188	400	393	215	256	176	344	187	288
CTTAGATCCCTATCAC	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TGGACACCGGGAAAAT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CTATATGTCTGTCCCC	alt_3117_RC	160	28	177	150	35	170	30	141	21	115
GGTTCGAAACGTTGCT	alt_3117_RC	191	38	232	240	36	192	42	166	26	171
TTCCGAGTCATACGGC	alt_3117_RC	85	16	116	110	15	93	23	106	16	76
GCATCATTGTTAAGGT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TGGCAGCTACGGGGAT	alt_3117_RC	292	47	402	362	64	335	57	329	48	291
TATAAATTACGTAAGA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CCTGGGGTAGCGCTTG	alt_3117_RC	106	23	89	109	18	106	27	89	27	93
GCCTATAAAAGCACAT	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
CAAACCCATAGTTCTA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
GATGGTTACCAATTGG	ref_3117_RC	1576	225	1966	1600	199	1506	231	1468	198	1246
CTTTTACGCTCATCAC	ref_3117_RC	240	29	322	259	39	225	35	248	42	218
TTTGAGCCTTCGTTCT	alt_3117_RC	841	137	1211	920	169	896	180	852	198	796
GTACCGTCTCCACGGA	alt_3117_RC	0	0	0	0	0	0	0	0	0	0
TGGGTTAGCGTTCAAG	alt_3117_RC	118	23	153	86	20	107	12	98	13	84
GGCGCGGCTATTTATA	alt_3117_RC	164	29	191	157	32	156	30	135	23	161
GCTCTCACTCTTACGA	alt_244_reverse	25	1	27	23	8	22	10	29	10	18
CAGGTATCCTGTCTGC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGTGATTTTATAG	alt_244_reverse	44	21	35	34	18	21	12	18	13	24
TAACCCAAAGGATGTC	alt_244_reverse	40	34	60	45	25	56	18	50	29	42
TGGTTCGGTGACTCCA	alt_244_reverse	37	13	45	30	24	29	18	28	23	30
GAATGCATTGCCCTAT	alt_244_reverse	136	80	178	175	99	140	101	146	103	145
CTTATACTCGCTCCTT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
AAAATACGCCCGCGCA	alt_244_reverse	23	10	7	13	6	9	4	13	4	10
TTGAGTGTCTGGAGGT	alt_244_reverse	42	20	44	62	17	45	26	53	38	33
TGGAAAACTCTGTCTC	alt_244_reverse	23	10	32	38	15	22	9	27	18	21
TATGTCCACTTTTTAG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TATACTGTTTTAGTCT	alt_244_reverse	85	48	82	84	45	81	31	68	50	71
CCTATATGAACAGTGA	alt_244_reverse	80	51	91	79	54	95	56	67	49	81
GCTGATCCACGCACGT	alt_244_reverse	16	6	23	22	3	17	9	13	14	15
CGGTTTTTATAGGCTT	alt_244_reverse	153	63	174	168	73	169	82	139	96	148
TGTTGAGTACCAGACT	alt_244_reverse	16	8	22	24	8	16	12	20	12	12
TCCACAATTCCACGAG	alt_244_reverse	212	92	224	195	101	183	112	172	92	162
GTCATGTGTTTTTTGT	alt_244_reverse	26	18	35	27	15	26	23	26	24	25
ATGGGAGGTGCCGTGG	alt_244_reverse	190	101	252	201	108	209	88	147	116	174
TTTTGTCGTATTAAAT	alt_244_reverse	11	3	6	7	4	4	6	7	6	3
GTACTCTGCGCTGAAA	alt_244_reverse	4	5	14	8	1	10	2	12	7	0
CGCGGCAGGCCTTGTG	alt_244_reverse	138	59	186	139	67	148	78	151	80	140
GGTGCTTCAGGCGCTT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CGCCGTGCATCGTTCG	alt_244_reverse	46	15	64	39	22	35	18	36	27	43
CCTTATCTTGTTTTTG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGGCTCATATTCA	alt_244_reverse	192	74	277	212	105	198	106	167	87	212
TGGCCTAATGCTTTTC	alt_244_reverse	40	20	54	36	11	42	21	41	15	26
TAAACGCAACTCCAGA	alt_244_reverse	33	14	51	28	27	26	11	31	12	29
CTTAGTGCACCTACCT	alt_244_reverse	6	17	2	4	15	4	15	9	21	7
AATTTTGTCTAACCCA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GAATTGTGTTTTACTC	alt_244_reverse	170	109	201	184	107	150	98	165	88	129
ATGTCAGCAAATCAGG	alt_244_reverse	27	17	36	36	13	31	15	22	10	27
TTATTCACCTCTGTTG	alt_244_reverse	107	48	120	83	57	96	60	89	42	92
ATCTGGTAACTTACAG	alt_244_reverse	7	4	13	10	4	12	3	9	5	5
TGCCGGATTAACGTAA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTTTTCTCCTCGG	alt_244_reverse	41	26	79	51	28	40	34	74	30	41
ATCTGCTGAATTTAGC	alt_244_reverse	71	34	87	89	40	67	46	62	32	61
GGTTACGCTGGGCGCT	alt_244_reverse	36	21	37	28	19	36	21	29	23	30
GGTTCAGTCACCTAAC	alt_244_reverse	11	5	12	11	7	11	4	14	14	10
CAGGTACATGATCATT	alt_244_reverse	24	13	31	29	16	26	11	15	19	24
ATTTCAGGCGGCTATG	alt_244_reverse	19	8	22	18	10	28	12	15	15	18
ATGTTTGTTTGTTCGT	alt_244_reverse	105	45	184	120	53	139	49	129	56	113
TGATCCGATTCCGTCG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGATCTTTAACTA	alt_244_reverse	42	18	30	45	19	34	27	38	23	26
AGCTGTGCGATAGAAG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTCAGATACTTCC	alt_244_reverse	116	67	121	100	42	115	66	84	54	103
TCTTATATCGCGGTCG	alt_244_reverse	124	48	127	126	48	99	54	97	67	94
GTTTTTCTAAGCGACC	alt_244_reverse	28	22	42	27	21	35	18	23	29	24
ACATGTTGTCGGTTGT	alt_244_reverse	93	50	108	98	52	102	65	98	44	103
ACTCTTAGAGTTCAGA	alt_244_reverse	79	39	83	74	43	59	30	74	37	44
GTGCTAGGCTAATTGC	alt_244_reverse	15	12	31	17	23	13	13	15	11	20
GCTCATAGTCTGTTTA	alt_244_reverse	13	10	17	22	11	14	19	16	7	14
AGCCACGGTTACGGAT	alt_244_reverse	20	11	28	20	15	11	13	21	19	18
GTGATTGCGGTAGTCT	alt_244_reverse	186	114	251	203	115	215	112	229	111	219
TACTCTGACTGCAATG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTTGACTGTACG	alt_244_reverse	105	43	128	100	58	85	51	83	64	84
GTAAGCTGGGCACCCA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGTGGCCTGGTCT	alt_244_reverse	31	17	28	30	12	25	12	34	11	21
GCTTTTCGTAGACGGG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTAGGTGTCTTGG	alt_244_reverse	61	51	86	84	41	67	55	78	42	70
GTGTTACATACTTCTG	alt_244_reverse	44	46	82	46	40	50	37	47	29	64
ATTACCTATTCTGTCC	alt_244_reverse	59	36	78	66	33	57	16	50	36	59
CATTTTATAGCATACG	alt_244_reverse	114	87	148	121	55	114	81	129	68	111
CTGCTGTACGTGGGAA	alt_244_reverse	36	19	28	49	32	31	27	37	14	33
TTAAGCTGCTTTATGT	alt_244_reverse	253	94	265	231	110	235	100	233	107	217
CGCACGATAATTGTTC	alt_244_reverse	39	37	39	46	19	52	32	48	18	33
GGCGCGTTCCCTAGGT	alt_244_reverse	148	64	153	125	70	140	76	144	67	112
ATGAATACTACTACAC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GCACAGCATTGGCATT	alt_244_reverse	42	16	52	37	16	32	15	26	25	31
GTTCATGTTATTACGG	alt_244_reverse	425	165	499	420	215	359	162	401	193	350
ACTCTACATCACGGGA	alt_244_reverse	1	0	0	0	0	4	0	2	0	1
CGATCTACAAATCGCA	alt_244_reverse	35	23	61	60	25	47	25	57	27	43
CCAGCAGCGAATTTGA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CGAAAAATTTTTCTTT	alt_244_reverse	122	57	167	124	50	132	56	109	59	115
TGGGATAGATGTACGT	alt_244_reverse	8	3	6	9	5	5	2	6	3	5
ACTTGCCGTCTCGTAC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCACGTAACTTGT	alt_244_reverse	15	9	17	16	14	10	15	11	18	12
GGTAATGTTCACTACA	alt_244_reverse	4	3	9	6	3	2	2	6	1	6
CATTGCCATAAAAGTT	alt_244_reverse	1095	574	1363	1103	621	1073	638	1057	682	992
CAGTATCAAACACAAA	alt_244_reverse	124	44	154	144	68	104	41	125	68	134
TTTGAGCACACTATTG	alt_244_reverse	27	13	23	18	14	22	14	13	26	17
TCCGGCAGCATCCCGG	alt_244_reverse	31	24	52	48	22	41	20	42	22	32
TCATAATTGTATGACA	alt_244_reverse	5	5	2	2	2	2	6	3	4	5
TTCTTAAGTTCTGGCG	alt_244_reverse	32	15	29	29	16	28	16	49	15	21
TAGACATGCCACTAAT	alt_244_reverse	77	56	111	107	70	105	39	94	63	94
CATTACATGATACGGG	alt_244_reverse	40	24	52	41	19	48	19	62	33	58
GACCACCGAATGATAT	alt_244_reverse	87	57	92	83	49	69	61	82	42	68
TCTTGAGGGAAAGTCC	alt_244_reverse	62	30	64	85	38	54	37	45	43	49
CGAAGTCCGGTGGTTC	alt_244_reverse	13	2	8	16	9	11	7	12	13	10
TGTCAGAGCACTAGCA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGCCGCATATTTC	alt_244_reverse	48	30	65	50	39	69	43	56	34	45
CTGCGGTATTCCCCGT	alt_244_reverse	20	12	18	9	9	7	15	9	9	12
ACTAACATACGAGTTA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCTTCACCGTTAG	alt_244_reverse	27	18	27	16	16	24	11	30	10	31
TCGTCTTTTTACCATT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GCTATGGGCAGTTGTT	alt_244_reverse	47	15	43	37	7	41	17	32	13	39
TAACCTTTTGTTACGT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTATTTACTTAGG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTATGCTCTGTGCACT	alt_244_reverse	14	6	12	9	6	13	7	17	6	6
GATTTGCTGGGTCCAC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTAACGGATGCCA	alt_244_reverse	153	69	172	147	55	110	67	130	76	129
GGAAGTGTGCTATGGA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGCGCAGATAGGT	alt_244_reverse	110	60	130	127	45	107	46	116	56	101
TCACTAACATCTTCTT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCCGCCCCACACT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGGTTTCAGCTGG	alt_244_reverse	24	12	30	24	12	19	13	19	13	20
AAGCCCAGAAGGCGTC	alt_244_reverse	75	43	78	76	29	60	41	56	35	77
TAATCAAATTTCGATC	alt_244_reverse	86	56	103	88	51	72	32	82	52	57
ACGCCGCGCGAACCCA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCGTCTTTAACGG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGTACTAGATTA	alt_244_reverse	50	37	63	49	35	56	23	55	27	47
TCGTAAGTGAGGCTTC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTCACCTCTGTTT	alt_244_reverse	27	23	29	23	21	30	15	27	14	22
TGGCCGTAGTCCGCTG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAGTTTCGATATT	alt_244_reverse	174	71	203	148	72	155	72	172	61	191
GGGGGTACATCCCGTT	alt_244_reverse	30	10	36	20	16	16	13	21	11	24
AGCGGTGACGACACTG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGAACTTCTGGCG	alt_244_reverse	70	41	114	91	28	97	39	72	54	64
TCCCATGTTATTCATG	alt_244_reverse	41	14	56	38	19	37	23	47	15	37
TACTTCTCAGTGGAAA	alt_244_reverse	98	29	72	62	45	78	45	59	38	65
CCCTCCGATTTTATTC	alt_244_reverse	262	137	337	260	107	275	119	265	136	260
ATGAAATTTGTTTCAC	alt_244_reverse	43	25	54	51	13	43	23	41	16	32
CTGGTGATTATGTTAG	alt_244_reverse	284	145	336	303	137	295	183	309	186	286
TTTCTACAGCCCATGT	alt_244_reverse	163	120	230	166	110	174	123	165	114	157
ATTTTATCTCATACGC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGTTTCGATCGTG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCCTAGTATCATG	alt_244_reverse	224	102	258	251	127	210	123	207	131	227
TCTGGGCGCATCTCGC	alt_244_reverse	31	18	43	23	15	24	11	31	14	32
CACATACTGGTCGGTG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GATTCAATGCTGCAAG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CGGGAGCCCTCTGTGC	alt_244_reverse	24	32	29	38	22	30	29	35	17	31
ACAACCACAGCTTGGA	alt_244_reverse	18	12	17	15	10	8	16	16	7	13
AGTACTTATGGAGATT	alt_244_reverse	51	23	76	29	27	42	28	61	34	33
ATGTGTTGTCGTTGGC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTGGCTTCTTTTA	alt_244_reverse	73	35	85	66	37	69	35	69	44	69
TGTTATAGTAAGGTTA	alt_244_reverse	132	51	144	135	72	131	59	121	80	106
ACTGGGTGTATCTGCG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
ATTACGCTGAATTCTG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGCATAAGGGTAG	alt_244_reverse	114	44	130	131	56	95	63	93	37	90
CACATCTGGGTACCTA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TGTACCTCGCAATGTT	alt_244_reverse	33	23	40	30	16	25	15	40	13	25
GGATATATTTTGAACG	alt_244_reverse	312	183	361	296	178	292	147	257	177	268
TTGACGTGTCGATACG	alt_244_reverse	63	33	84	70	43	62	41	62	57	70
AATAAATGCCTAATTT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
CGCGAAAACACTCCTC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
ACAGATGAGTGCTACC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGGTATCTAGCAC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TACAGTGCCTCTTCTA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTGACACCCTGACTAC	alt_244_reverse	20	12	33	31	15	32	14	17	20	29
TTGCCACGAATTCTCC	alt_244_reverse	22	9	25	15	11	23	18	10	24	23
CGCAATATCATCATTC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
AATCGCCGTAGGCTAA	alt_244_reverse	48	36	69	43	17	56	25	51	17	36
GGTGTATAGGGATCAG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GTGATGCTCCGCATTC	alt_244_reverse	68	36	81	64	46	58	24	66	41	60
TTGTTCATTGCATCGT	alt_244_reverse	62	24	48	55	14	45	16	34	15	41
CTCTCTTCCATCCCCA	alt_244_reverse	106	47	118	105	43	66	39	84	43	94
GGATTTGAAAACTGGG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
GTCACTTTAAGACTTG	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGTGACTGCTCCT	alt_244_reverse	1	0	3	0	2	3	2	0	1	1
TGCTGTGGAACAAACC	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCCGAATTAAGCG	alt_244_reverse	59	44	90	73	44	52	49	60	57	64
CGGGTCTACATAACAA	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTAATTCATTGGA	alt_244_reverse	28	6	31	29	11	48	11	40	10	38
TTCTGGGCGATTAGCT	alt_244_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTCCTACGTCTTC	ref_6055_new	17	15	19	14	32	13	31	12	33	14
GGCAACAGCAATGGCG	ref_6055_new	0	2	2	4	3	4	1	0	1	2
TCTTCTGTTCTAGAAC	ref_6055_new	0	0	0	0	0	0	0	0	0	0
GAGTGTGTCTTGTTCT	ref_6055_new	17	21	26	12	17	9	29	12	18	10
CTGGACTTGAATGTCT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
ATTATTTCCTTACAGC	ref_6055_new	78	96	91	74	103	77	120	74	113	72
AAGCATTTTTTTGCCT	ref_6055_new	5	10	10	6	8	10	6	6	5	1
ACCTCAATAGCAGGTC	ref_6055_new	0	1	1	1	3	1	0	0	0	0
GTTCGTCCGTTCCTCA	ref_6055_new	71	115	97	52	135	64	136	55	113	60
GCGTAAATATAAGCTT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
ACCGTCCGTTTTCAGG	ref_6055_new	64	132	54	56	126	69	128	62	117	52
TCAGATAGGTTTTGGG	ref_6055_new	95	207	79	84	187	73	177	77	209	97
ATCAGGTTGCTCGGAC	ref_6055_new	215	321	260	195	385	213	327	187	375	210
GGCGGCTGATCAAGCT	ref_6055_new	48	97	67	61	85	59	77	45	72	36
CCTGTTTCACCTGGAT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
ATATCAAGCCTCCTGA	ref_6055_new	0	0	0	0	0	0	0	0	0	0
GGTGGCGCTCTTTACC	ref_6055_new	0	0	0	0	0	0	0	0	0	0
ATAGATTTTCATGACG	ref_6055_new	0	0	0	0	0	0	0	0	0	0
TTACTCGATGAGTTCA	ref_6055_new	3	23	16	12	17	5	16	8	24	8
CACAGTTTTCCACGAT	ref_6055_new	104	178	160	116	175	96	180	131	212	126
GTCCAGATTTTTATCT	ref_6055_new	21	41	36	28	34	24	60	29	37	18
TTCTGGATGAGGTCCG	ref_6055_new	52	94	66	57	93	51	95	53	89	56
ATCGTCTCCCTCGAGG	ref_6055_new	59	78	66	69	109	34	69	50	117	63
GTAGCTTACTCACTTC	ref_6055_new	0	0	0	0	0	0	0	0	0	0
TGTTTTGGGGACCCTC	ref_6055_new	0	0	0	0	0	0	0	0	0	0
ACTACACCACAGGCGG	ref_6055_new	0	0	0	0	0	0	0	0	0	0
CTGTTATTCCCTCGTT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
GTACTATGATGACAAC	ref_6055_new	44	68	48	31	62	40	72	28	76	41
GCTAGGTAGGCAAACT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
TCCAGGGTGCTTCTGC	ref_6055_new	21	46	51	37	65	33	74	40	63	42
TATATTGACACATGAG	ref_6055_new	0	0	0	0	0	0	0	0	0	0
AGCACTGAGTTGGAAG	ref_6055_new	5	18	21	5	18	13	24	7	19	14
GATTTTGTCAGGTTCA	ref_6055_new	0	0	0	0	0	0	0	0	0	0
TTAATTTGTACACTAA	ref_6055_new	14	11	7	9	11	7	15	8	15	11
TCTGGTATATAGTCCC	ref_6055_new	14	16	16	13	14	6	15	11	25	4
GGTAGAGGTACATCAA	ref_6055_new	32	73	48	36	47	32	71	28	69	42
TCGCCTCACGTACCAT	ref_6055_new	4	12	7	10	21	7	18	5	17	9
TATAGTGTAGGGCTCA	ref_6055_new	22	50	43	26	55	27	57	24	69	25
CTATTCGGTAAAACTC	ref_6055_new	0	0	0	0	0	0	0	0	0	0
CACCACTTCCAAGTCT	ref_6055_new	41	70	42	38	65	31	59	38	74	23
TACACCACGGGCCCGC	ref_6055_new	16	25	24	16	51	10	35	24	23	8
CGTTAAATAGGATCTT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
GCGCCTCATCTTCTAG	ref_6055_new	0	0	0	0	0	0	0	0	0	0
GTCCGCCCCAACTCTG	ref_6055_new	29	57	41	32	63	37	61	41	63	35
GGTGTTTGAACTCAAT	ref_6055_new	3	12	8	4	4	5	11	0	14	4
TCCTCTAAACCACCAT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
TCTCTACCAGTCGTAT	ref_6055_new	1	3	1	2	1	4	3	1	7	0
CTTAGGTGTCCTGTGG	ref_6055_new	8	10	11	7	13	3	11	6	6	6
CATTGCCTACTTCTAT	ref_6055_new	1	3	3	1	4	1	5	1	4	1
ACGATCTAGAACAGTT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
AGTAAGCAAGCTGTGT	ref_6055_new	15	28	18	12	26	14	26	19	30	10
CAGCAGAGGAGGGGTC	ref_6055_new	13	10	19	12	18	10	17	8	12	10
TTATCGTTTGCCTGCG	ref_6055_new	18	17	17	8	20	18	17	12	11	14
TATCGTGCGGCTTTTA	ref_6055_new	11	17	10	9	11	12	11	7	33	2
TGTTCCAATGGCGGCT	ref_6055_new	5	13	19	13	12	19	14	12	17	8
CGCTCGCGACCGCATC	ref_6055_new	34	25	39	21	37	22	34	22	42	37
GGTCTCACTTGAGCAC	ref_6055_new	30	75	56	58	84	42	99	49	106	33
TACGCTAACTGAGTAT	ref_6055_new	1	4	3	3	4	2	6	3	0	1
TAATTCATGGCAGTCG	ref_6055_new	22	26	38	37	46	26	45	22	42	25
CATTAATGTTCCAGCA	ref_6055_new	95	155	122	93	157	89	150	78	194	71
TCGTACCTCATCACCC	ref_6055_new	27	27	16	19	40	9	35	14	39	20
GCTATGTTGGACTTAT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
ATTCGCGCACTTACGT	ref_6055_new	12	30	17	16	25	19	26	19	30	13
CTACCACACGAAAATA	ref_6055_new	24	45	29	25	35	22	47	19	41	26
CCAGCCGTATCTATTC	ref_6055_new	0	0	0	0	0	0	0	0	0	0
AGTAACCGGAAAGCCT	ref_6055_new	0	0	0	0	0	0	0	0	0	0
TGCGCTACCTGATGAG	alt_2632_RC	40	77	51	33	52	39	61	25	70	35
CGTCAGTGTTGCACGC	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
ATTTGCGGATGGGTTA	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
GACTAGGACTCATTCT	alt_2632_RC	87	155	116	113	150	73	152	98	155	92
AAGTCGGTAATTCGGA	alt_2632_RC	252	392	282	269	336	273	361	233	369	185
TAAATCTGATGCTCGA	alt_2632_RC	14	17	15	15	15	7	19	5	15	14
GTTGACTGGTTCTGCC	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
CGAGTCATATACGGAG	alt_2632_RC	9	16	13	9	22	11	12	12	27	13
TATATATTCCTCAACT	alt_2632_RC	0	6	3	4	4	3	0	7	17	2
CCTCATGTCCCCCATA	alt_2632_RC	9	47	18	17	47	13	47	13	62	14
CATGGCATATTCATAC	alt_2632_RC	9	13	12	13	21	6	13	10	22	16
CCTAGGGTCATATTAT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
TACTGATACTACTATC	alt_2632_RC	15	22	14	11	39	12	26	14	17	18
GCTGGACTGCCGCGCT	alt_2632_RC	3	2	2	5	7	1	3	3	9	2
ATTGACTTTTTGCAGG	alt_2632_RC	1	0	1	0	1	0	1	2	0	1
ACGGAGTTTCTTGCTT	alt_2632_RC	58	42	54	47	64	50	58	54	60	45
TGCCTCACCTCAGCCT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
GCAGAGTGCATTGGTG	alt_2632_RC	38	53	52	40	61	35	53	29	51	33
GCTATTTGGTTTCAGA	alt_2632_RC	22	50	38	38	54	32	63	30	48	28
TGCGGGTATATTAGAT	alt_2632_RC	6	12	18	17	13	18	15	9	22	13
CCATTTCCAAACGACT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
TCAATTCTCTGAACGT	alt_2632_RC	11	17	13	9	16	15	12	15	16	11
TATTGCTTGAGCAGCC	alt_2632_RC	7	31	23	16	28	16	33	22	27	14
CCGCCTCACGCTTTGG	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
GGAATCTGGTTTAATC	alt_2632_RC	20	25	31	9	30	17	23	9	31	12
GTGCCACCCTTCGTGG	alt_2632_RC	22	40	23	18	39	21	46	17	33	30
TGAAGTCGTTTGAAAT	alt_2632_RC	32	38	43	29	55	37	47	33	54	30
CTCGTAGAGTATAGTG	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
TATTTGTTTATTAAGA	alt_2632_RC	31	49	44	39	35	24	37	31	50	35
CCGACCCTCACAGTGT	alt_2632_RC	26	40	35	16	43	24	47	27	64	14
TACTTGACTACACGCA	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
CATGAAATTGGTCTTT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
GTCTACAGTACCTTAG	alt_2632_RC	1	10	3	4	12	5	8	4	16	4
CCGCCCCTCACAGTGT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
TTTAATGGTTTGTTTC	alt_2632_RC	26	35	34	34	23	22	32	37	39	25
AGCACAGAGCTTATAG	alt_2632_RC	41	45	62	49	55	35	48	23	54	42
ATTCCGAGTTTGACTT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
GCGGAACATCGGCACA	alt_2632_RC	46	31	60	49	56	41	59	38	51	35
ATACTGTTCTGGTCTT	alt_2632_RC	26	43	27	16	52	28	39	27	37	23
ATGCGTCGTTGTGCCT	alt_2632_RC	6	30	6	5	43	20	34	5	27	5
GCATGAGGGCCTGAGC	alt_2632_RC	59	66	60	54	78	39	65	56	75	49
GCTGGGGAGAACCCGG	alt_2632_RC	13	10	11	9	17	4	9	11	16	6
TCCTCCAATCCGGGGG	alt_2632_RC	82	110	93	93	137	77	135	80	125	85
CTATAGTTTCAGCGTT	alt_2632_RC	6	6	6	3	9	4	8	6	13	4
GCGTGTATTATATGGC	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
ATAGAACAGAGAATCG	alt_2632_RC	58	93	87	86	94	76	97	54	87	71
GTCGAGCCGCCTTATG	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
AATTCCACTCGGTAGT	alt_2632_RC	6	15	9	13	16	9	9	10	27	6
ATGATGGCACTCGCTC	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
TCTCAGTACGCCGTTC	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
AGTCGTATCACGCATT	alt_2632_RC	76	114	90	86	97	63	101	60	97	61
CACTGATCGTCTGGAT	alt_2632_RC	8	10	9	8	11	5	14	7	8	11
TCGGACTAGGTTTTTT	alt_2632_RC	30	37	33	25	34	29	50	26	43	29
GTCTTTATTTGTGTGT	alt_2632_RC	5	14	8	8	8	3	9	7	13	5
CAGCAATATCTTATGT	alt_2632_RC	4	21	10	5	24	8	20	7	13	12
TATATATATTAGCTCG	alt_2632_RC	30	44	41	36	62	34	49	25	66	30
GAAAACGTCCTAACAC	alt_2632_RC	282	345	317	274	405	260	385	276	416	223
AGCACCATCGGGGAAG	alt_2632_RC	8	19	11	12	8	8	17	11	17	8
ATACAGACCATAGCGT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTTGTTAATACT	alt_2632_RC	9	25	20	9	29	11	23	16	22	8
TGCTGGCTCACGATTG	alt_2632_RC	58	99	56	75	89	44	95	64	95	80
ACTCCACATCGCGTAG	alt_2632_RC	9	13	13	12	7	8	12	8	19	8
AGCTTCTAGGCTAAGA	alt_2632_RC	21	35	32	23	53	22	53	31	45	28
ATAACCAGCTCGAGCG	alt_2632_RC	6	18	15	15	22	12	22	5	13	11
TATAGTCGTACATGCC	alt_2632_RC	20	24	27	25	33	17	37	19	37	23
ACTTTATTCCCATAGT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
ACAGTCGTGAGTTCCT	alt_2632_RC	7	10	1	2	8	3	9	5	14	3
ACGCATTACGTGGATG	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
TGGTCGGTTGCGTCGT	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
GCTATCGCCAATAATG	alt_2632_RC	63	81	72	46	89	55	84	44	88	57
CCCTAGCAGTGAAGGC	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
TGTCAGCCAATCCATC	alt_2632_RC	13	23	18	20	21	11	30	13	29	12
TTAGCCATATGGGTCA	alt_2632_RC	12	22	28	14	32	19	16	18	25	14
TTAACTGCGCGGTTTT	alt_2632_RC	43	79	57	33	80	37	49	43	83	32
AGCACTCGCCTTATCC	alt_2632_RC	25	57	37	19	55	38	61	23	55	38
TGGTCACCCCGTTCAG	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
ATGGCCGTACCACTCG	alt_2632_RC	51	54	48	39	65	53	73	41	69	56
TAAGACCTATCACGAT	alt_2632_RC	22	25	41	20	40	29	47	23	36	16
GGGGAGCCGATGCTAG	alt_2632_RC	32	37	32	33	47	28	35	26	30	19
GATTCACAAGTCAGAA	alt_2632_RC	173	280	252	187	294	193	310	145	286	147
CAAGGAGGTCATGTTA	alt_2632_RC	104	126	131	97	108	90	134	73	109	90
TTCTTTCTGTACGACC	alt_2632_RC	7	9	8	7	16	8	11	7	10	6
CGCGGCTCGGCTCCCA	alt_2632_RC	0	0	0	0	0	0	0	0	0	0
AGTGCACATTGACGTG	alt_2632_RC	41	82	63	36	74	50	70	59	78	42
GGCGGCGTGGCAAACC	alt_2632_RC	39	63	54	42	56	28	47	40	58	32
TTGTTATGTTGAGGCA	alt_2632_RC	10	18	19	12	13	14	18	15	31	13
TCGCCATAACTTTAGG	alt_2632_RC	49	62	53	35	65	46	67	42	68	41
GCTTCCATTCCTTTTG	alt_2632_RC	15	12	15	14	11	13	12	12	21	10
ATTAGAGGCCCGTCGG	alt_2632_RC	4	10	12	7	7	1	19	10	22	9
GACCCTCCTCTCGGTT	alt_2632_RC	54	72	55	51	73	37	85	38	77	55
ACCTGTAGGACTTCAG	alt_2632_RC	8	14	10	3	7	4	21	7	14	4
TCCTCTTAACAGTCTT	ref_5913_new	0	0	0	0	0	0	0	0	0	0
CGGATTCTTGGCTAAT	ref_5913_new	96	139	121	78	159	86	145	90	161	82
TCTGTCTGCGCAATAA	ref_5913_new	0	0	0	0	0	0	0	0	0	0
GATTTTTAAGCTTTGA	ref_5913_new	11	9	10	3	5	7	10	2	7	5
GGAATAACAGAATGAT	ref_5913_new	77	105	108	68	98	67	112	67	132	87
GCCCAGATGTACCTTT	ref_5913_new	8	26	23	18	18	13	26	13	24	18
TGAGTGTGATCACTGT	ref_5913_new	6	30	10	7	21	9	24	10	21	2
GAACGTATTCGGTTTA	ref_5913_new	0	0	0	0	0	0	0	0	0	0
GGTTAGGACCTGTTTT	ref_5913_new	29	46	44	39	61	33	54	48	55	29
ATATGTGGTATTCCTG	ref_5913_new	0	0	0	0	0	0	0	0	0	0
CGTCGCATCCCTTCTT	ref_5913_new	0	0	0	0	0	0	0	0	0	0
TCCACCCGGGTTCTGC	ref_5913_new	0	0	0	0	0	0	0	0	0	0
CCTTTTGTCTACACAA	ref_5913_new	9	38	6	21	50	14	44	11	43	10
CTGCTTTATCACTCAG	ref_5913_new	35	44	38	33	53	31	47	25	45	25
ATACTCGTGAGTCACC	ref_5913_new	0	0	0	0	0	0	0	0	0	0
CTACGAGGTGTGGGCT	ref_5913_new	0	0	0	0	0	0	0	0	0	0
TTAGGTTCAGGCTTGT	ref_5913_new	16	20	16	10	20	28	32	7	29	13
ACGGATGTTGCAATGG	ref_5913_new	0	0	0	0	0	0	0	0	0	0
CTGAGTTGGGTAGCTC	ref_5913_new	3	14	8	8	5	6	6	4	7	5
CTTTTATTCTCATGTT	ref_5913_new	6	2	4	2	7	10	5	1	10	2
GCCACATGTTATCCAC	ref_5913_new	4	14	14	6	12	4	16	5	16	3
CCACACCTGGTTCCGC	ref_5913_new	3	11	6	2	10	1	11	4	7	5
TGGACCATTCTCCAGG	ref_5913_new	14	17	17	9	18	6	21	16	25	20
AAGTATTTTTTGTGGT	ref_5913_new	11	18	9	16	20	9	23	12	22	9
CTCTTCAGCTAACCGA	ref_5913_new	2	2	5	0	3	1	7	3	8	4
CCTGGTCGTCTCGTGG	ref_5913_new	20	40	14	19	35	6	56	17	45	12
AAGTAGTCGGCGTAAC	ref_5913_new	0	0	0	0	0	0	0	0	0	0
CTTAAAGTTCAAGGAT	ref_5913_new	9	15	14	9	15	18	14	11	16	18
CGGAGGTAACTCATCC	ref_5913_new	17	25	21	14	24	22	21	11	33	17
CGCTTCGTAAAACCAC	ref_5913_new	4	4	1	1	1	4	5	1	2	4
GTACGGCTCCTTGGGA	ref_5913_new	10	18	9	14	22	4	14	8	22	8
TATGCCCGCCGTATAG	ref_5913_new	14	14	11	17	29	12	20	8	15	5
GGTATCCGTTACTCGT	ref_5913_new	19	42	41	18	30	21	35	23	45	15
AGGTCCTCCAGAGGCA	ref_5913_new	53	81	49	29	81	42	70	53	78	38
TGAGCGCTCGTCTTAA	ref_5913_new	0	0	0	0	0	0	0	0	0	0
GTCGTTATCTATCTTA	ref_5913_new	52	68	58	61	68	49	61	43	45	44
TTTAACTGGTTTTGCC	ref_5913_new	1	0	3	2	7	1	3	2	3	2
TATCGGCATGTTAATT	ref_5913_new	0	0	0	0	0	0	0	0	0	0
GGGACATCTTGAAGCT	ref_5913_new	5	6	8	6	11	3	9	11	12	1
TAGCCCCTTATTAACA	ref_5913_new	38	28	25	26	47	27	48	13	39	23
GTTGGCGAAGTGTAAC	ref_5913_new	46	59	41	38	48	51	58	41	70	28
TTCGTAGCGCCCTTAC	ref_5913_new	18	31	29	31	38	26	43	15	43	16
TGAGGACACGTCGTCA	ref_5913_new	11	14	4	13	12	14	22	13	22	12
TGGCGAAACAAGATTT	ref_5913_new	17	14	10	11	9	10	13	5	11	10
AATGGTTGTAGATTCC	ref_5913_new	3	7	6	6	7	2	14	6	7	5
GTCAGTTCTGGGAAAG	ref_5913_new	13	15	13	5	30	8	25	11	22	9
TGCCCCTATACCCCTA	ref_5913_new	9	5	3	6	9	5	4	9	9	4
TTTTAACACAAACCTT	ref_5913_new	0	0	0	0	0	0	0	0	0	0
ATTTTGTCCGTCATGT	ref_5913_new	10	46	25	18	37	35	32	17	51	20
ACGCTCAACGTTACTG	ref_5913_new	17	44	39	25	46	29	50	25	64	28
GTATGCCAATTATTTG	ref_5913_new	16	17	23	24	22	10	21	14	27	9
GTGGATAAATGGAAAT	ref_5913_new	31	51	48	29	35	28	56	33	59	21
CATTTGCTACCTACGC	ref_5913_new	0	0	0	0	0	0	0	0	0	0
ACATTTTTGTTGAAAC	ref_5913_new	0	0	0	0	0	0	0	0	0	0
GCGGCTTTGCGACGTT	ref_5913_new	89	151	126	104	189	116	202	99	185	109
ACCTTCAGTGGATTAC	ref_5913_new	53	91	46	52	70	56	81	31	107	32
GACCTTTCGATGTGGA	ref_5913_new	136	147	128	114	189	139	162	107	201	112
CAGGTATCTCGGTACT	ref_5913_new	14	11	8	12	11	3	16	9	17	7
TTGTTATCGGAGATGG	ref_5913_new	9	15	10	13	16	6	13	6	15	8
ACTTCTGGGCACATCA	ref_5913_new	8	16	12	6	10	5	4	7	6	11
TGAGCAGTTGCTCAGT	ref_5913_new	4	6	3	3	8	3	9	1	11	3
GCACGCCCGTTCGGTA	ref_5913_new	19	29	29	24	31	26	37	25	28	18
GATAATTACACTGGCG	ref_5913_new	14	21	19	15	28	16	23	21	35	10
TTGTATGTGTTTTACG	ref_5913_new	49	70	66	50	69	48	82	44	70	39
TCTATCTTATTCCCAA	ref_5913_new	7	15	7	7	5	10	13	9	13	7
CCTGCATTTTTACTAT	ref_5913_new	6	7	4	2	8	5	9	3	11	2
GACCTGCTTTGTTCCT	ref_5913_new	14	18	17	13	12	11	20	9	21	8
TTTTGTCGGGCCGGTT	ref_5913_new	10	22	20	11	27	17	16	13	30	10
TTTCATATTGATTGAA	ref_5913_new	36	49	42	26	43	25	73	25	34	26
GGTTTGTCAGATAGGA	ref_5913_new	22	36	30	21	42	35	55	25	35	29
ATAACTGACCATTAGG	ref_5913_new	55	93	92	48	89	43	88	55	76	66
TACGGCTTTCTCTGGA	ref_5913_new	37	41	39	24	46	28	56	28	50	30
TCTTGTCCGCGCTACC	ref_5913_new	11	14	8	5	11	8	14	3	21	6
ACCTACATCACGACCC	ref_5913_new	0	0	0	0	0	0	0	0	0	0
CTCTAGCTCGTCTCCT	ref_5913_new	0	0	0	0	0	0	0	0	0	0
GCCGCCAATGAAAATC	ref_5913_new	30	62	34	45	64	24	76	28	74	34
TCTTTTCATCCGGCAC	ref_5913_new	24	26	21	17	31	27	26	20	27	18
AAACTTCGTAGGTCAC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TCCACTACTATTAACT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TAGTCTTATCCGAAAG	alt_5692_new	11	23	19	7	15	12	22	7	22	9
GTCCACTGTTCAAGGT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TTGTGTAGTATTACCA	alt_5692_new	24	27	17	24	26	20	29	18	31	18
GTACCTAAAGGCCTTC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ACGTGGGTACCAGCCG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
GCCGCTTATCCGTACT	alt_5692_new	53	138	81	58	123	61	153	57	149	49
ATACGATCTTCTTAAG	alt_5692_new	77	101	91	82	92	70	103	72	94	60
GAAAGCGTACCTAGTT	alt_5692_new	0	0	1	0	2	4	3	1	1	0
CAAGCTGAGACCGGTC	alt_5692_new	9	8	18	8	7	5	10	11	9	7
AGATCTGGCCGGGCGC	alt_5692_new	79	100	64	62	99	63	88	50	113	52
TCCACCGTGCACTCCG	alt_5692_new	2	11	7	5	12	2	13	3	17	3
TTTCCCTGGAGTCCGC	alt_5692_new	10	26	26	22	27	17	20	15	28	10
ATGGTACTTATTGGCC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TGTTCCCAGTAAAATG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
GTACTCCGTTCTATTA	alt_5692_new	3	9	5	4	6	5	4	1	6	3
TACTCCCTCGTTATGG	alt_5692_new	7	47	9	7	36	5	38	4	45	4
TGTGGCGATTATAGCA	alt_5692_new	14	22	14	10	24	10	27	16	20	16
CGAAGAGTGAGCCCGT	alt_5692_new	6	15	12	15	16	10	8	5	20	2
TCATACTCTTGTATCG	alt_5692_new	13	18	15	10	17	16	21	7	25	5
GCCGACCGAGTCTTCC	alt_5692_new	3	25	14	19	16	15	23	15	28	6
GGCTGTGTCAGCGTCA	alt_5692_new	21	44	36	28	33	24	29	20	37	31
AGACTGGCTCTTCGTC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ATTCGGAGCTTGGTTG	alt_5692_new	14	13	13	8	14	13	14	7	27	13
GTTCGGTAGGGTAAGA	alt_5692_new	40	76	57	39	75	43	82	33	65	43
CTGTAGATATCGTAGT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
AGACCCTCGTCGGTCC	alt_5692_new	26	61	39	29	55	39	47	25	46	25
CTTGCGGAGTTGAATA	alt_5692_new	0	0	0	0	0	0	0	0	0	0
AACACAGGCTATGACA	ref_5692_new	2	2	4	5	3	1	1	1	2	2
AAGCTAATGATGGAAT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TGGGCTCTCGACCCGT	alt_5692_new	34	45	25	23	63	40	47	16	50	21
GATCGTTTTTCCTGGT	alt_5692_new	12	5	10	10	15	16	15	5	20	11
TCGCATGCACGTAATT	alt_5692_new	47	62	52	55	60	34	84	38	88	50
ATGAATGTCAACGTCA	alt_5692_new	13	22	12	16	27	15	31	20	20	15
TACCGATCGTGCGCCG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ATGTCTATTGGCTTCA	alt_5692_new	34	53	37	36	52	37	66	32	52	21
TTCTTAGGGCAGCAGT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ATCCGGAAAAGGCCAA	alt_5692_new	3	1	4	4	4	3	5	1	3	3
CCTGCGTGGCGTGCTC	alt_5692_new	19	22	15	16	22	12	16	13	37	8
ATTTTTCCTTTTCCGT	alt_5692_new	13	15	14	13	11	14	8	10	15	8
GCCACGTCTACCTCGG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ATTTCAATTTCGTTTT	alt_5692_new	78	100	108	101	132	91	155	97	148	67
CACACTGGAAAGAATG	alt_5692_new	4	6	8	6	14	2	8	1	16	5
TAATTTCACAGATTGT	alt_5692_new	9	19	9	8	10	8	15	17	17	12
GTACCTAATGTTATGC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TTACTTATCTTTTAAG	alt_5692_new	1	3	7	1	8	4	8	1	1	3
TGTTGCGCATAGATAA	alt_5692_new	0	0	0	0	0	0	0	0	0	0
CGTAACCGTTCCTCGG	alt_5692_new	18	39	21	33	31	23	40	25	48	18
GGTCTATAAGCTGTAG	alt_5692_new	8	17	4	4	14	4	19	13	8	11
ATTTCTGGTCAAACTC	alt_5692_new	2	1	1	0	5	0	2	0	1	1
CTCATAATATTGCCCT	alt_5692_new	14	19	22	19	18	11	17	10	29	19
CATCACCCTGCAAGCT	alt_5692_new	38	73	59	38	91	42	84	37	69	34
AGCTGGATTAGCATGA	alt_5692_new	5	10	1	5	10	7	10	9	13	3
ATGCCCTGCAATATGA	alt_5692_new	9	33	13	11	14	9	30	9	13	11
TTCGTCAGCCTACACG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ACGTATTTAGCCCCAG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
GCATACACAATTCTGA	alt_5692_new	25	49	34	39	55	25	62	16	51	22
CTGCAAGCGCCCCAGA	alt_5692_new	36	59	40	38	46	35	67	32	40	51
TACATTTTACTTGGAG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
GTATCGATTGCGTGTA	alt_5692_new	4	4	5	5	2	0	3	3	0	1
TTTAGTGGCCGTAAGC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TTACGACTGATCTGCG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
CCCGCACCTATCCTCC	alt_5692_new	15	19	13	12	28	15	24	12	28	14
TTCACCCTTCCAACCT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
CGACACGTGTACTAAT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TTACCCTCGGAAGTAT	alt_5692_new	4	8	0	8	7	4	13	3	17	7
AAAAACGAGCACATTG	alt_5692_new	0	0	0	0	0	0	0	0	0	0
CGGGATCGTCATTTTC	alt_5692_new	16	22	22	28	37	25	27	28	33	13
CTTGCCGTGTATCGAC	alt_5692_new	17	24	15	20	22	12	27	9	32	13
TCTAGTGTGTGTTTGC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
GCCGAGACACGGGTGC	alt_5692_new	24	45	27	34	43	16	48	17	51	21
CTAGAAGTACTCCTAT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TAATTCTTATGTCTAT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
CTACAGTCTTCGACTT	alt_5692_new	24	40	30	28	58	23	38	23	48	27
TAAGAGCAACAGTCGT	alt_5692_new	12	19	25	16	44	16	22	14	26	15
AACGGCGCATAAACTG	alt_5692_new	6	9	11	10	11	6	14	4	14	8
ATTACGGGCTGTTTTT	alt_5692_new	0	0	0	0	0	0	0	0	0	0
AGGTGACAGAGGATTG	alt_5692_new	5	6	6	6	5	3	9	5	7	3
TAATTATAGATATGTT	alt_5692_new	23	60	46	36	78	28	82	29	53	27
GTTAATTCGCACCACG	alt_5692_new	0	5	1	2	2	0	2	1	1	1
ATCTACTGGCCATCAC	alt_5692_new	16	44	21	19	45	22	54	17	50	18
AGGAGTGGGTTTCCCA	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ATTTGTCGATTGCGGA	alt_5692_new	16	23	9	17	28	18	27	18	21	17
TAACCGCTGCCCTTGC	alt_5692_new	15	20	11	16	27	17	33	11	42	2
TGTTTTCAGGCGGATC	alt_5692_new	81	90	91	89	97	91	90	61	114	50
ATGGACGGGATGACCG	alt_5692_new	7	4	7	1	8	6	12	1	12	0
TAGCGCAGACGCCTCT	alt_5692_new	10	22	12	12	37	19	37	12	40	6
ACTGGATCGACTTGGC	alt_5692_new	8	41	11	5	42	5	51	7	38	2
CTTGAGTTAAATTTAG	alt_5692_new	17	20	12	15	42	22	13	17	22	8
GGGGATCTCAAACGGG	alt_5692_new	21	25	19	11	32	17	25	15	23	9
CGAAAGGACAGTTTGA	alt_5692_new	70	80	70	65	95	34	111	54	104	55
ATTCTCTGGACCTCTT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
CATCGATCCTCGATTC	alt_5692_new	60	87	57	59	81	48	76	50	81	36
ATCACGTGTCCGTTCT	alt_5692_new	24	27	26	17	31	15	30	13	30	25
CTTGGGAGTGATTGCG	alt_5692_new	11	31	16	17	31	10	21	6	27	12
CATCATAAGCGGAACC	alt_5692_new	14	12	10	19	17	10	13	5	11	6
CTGAAAACTTCGAGCC	alt_5692_new	9	13	15	10	10	7	13	7	9	11
GGAATAATTCCACGCA	alt_5692_new	30	45	36	30	73	39	69	40	81	26
ACCGAACCGGAATTTT	alt_5692_new	13	43	23	26	33	20	49	16	39	14
ACTTTTCTACCGCGGA	alt_5692_new	14	27	19	12	21	11	22	11	21	17
GGACTTTCCACACACA	alt_5692_new	0	0	0	0	0	0	0	0	0	0
ATGATGTTGTTGCCAG	alt_5692_new	1	1	1	0	1	3	2	0	1	0
AATTATAGATTATTGT	alt_5692_new	13	24	12	18	11	9	17	10	14	17
ATTGGCAAGATGAGGC	alt_5692_new	11	18	12	8	30	11	12	10	22	8
GTACCTAAAGTTATGC	alt_5692_new	0	0	0	0	0	0	0	0	0	0
TGGAGTATCTCTCGTC	alt_1819_upstream	9	4	16	4	6	7	13	3	7	12
ATTTGAGCAAGGACGG	alt_1819_upstream	43	42	49	53	23	47	32	41	35	39
TTGTGACGTTCGTATA	alt_1819_upstream	32	26	35	33	25	28	32	15	44	23
ATACAACGGCGTTTCC	alt_1819_upstream	15	11	27	26	16	14	13	22	28	30
AGCAACGTCTATCATT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CGATTGCTGCCTCAGT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTGCGCTATCGCC	alt_1819_upstream	264	220	302	234	229	252	216	253	226	219
GGAACAGCCCGGAGAG	alt_1819_upstream	8	30	24	19	24	20	25	14	23	10
GAAGTAGTCTTAGCTA	alt_1819_upstream	60	48	46	49	49	57	52	55	55	41
CGTAGACCCGAGCCTC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TATACGTTTACCACGA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TATATGGCCGAAAGCC	alt_1819_upstream	22	9	24	10	9	8	6	8	7	5
CTTATATTGTTTCCGA	alt_1819_upstream	10	7	22	14	16	14	17	14	6	12
GGTAGGATGCGAATCT	alt_1819_upstream	44	38	56	43	48	44	34	38	30	39
CATGTCCTACACATCA	alt_1819_upstream	104	105	154	133	104	100	103	113	79	102
TTTGTCCGGGTCAAAT	alt_1819_upstream	29	22	32	32	19	47	27	28	23	40
AACCATGGCAGGTCTA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TATATTGTTATTAAAC	alt_1819_upstream	27	15	27	20	10	13	8	15	22	18
GCTTTCCTGGAACGTC	alt_1819_upstream	17	22	29	14	26	16	10	14	23	12
CGGTTTGAAGCTGTTG	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTTTATGCCAATG	alt_1819_upstream	12	8	15	9	7	4	7	11	11	6
AGATCTTTTCTTTACC	alt_1819_upstream	36	41	43	51	32	32	45	33	45	43
AACGGTGTTGTTTAGC	alt_1819_upstream	37	19	29	17	22	23	16	28	31	26
TGCCTTGGTCCGGATC	alt_1819_upstream	3	4	5	5	4	3	6	5	7	10
GGTGATAATGTATCAT	alt_1819_upstream	10	8	10	12	13	18	7	11	11	16
TGCTGCGGCCTTTTAT	alt_1819_upstream	14	23	16	15	14	12	22	10	16	11
GTGGTCTTCCATCATT	alt_1819_upstream	13	9	17	11	11	12	20	19	22	24
ATAAGCAAATCGATTT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
AAGCGTCCCCGAAAAC	alt_1819_upstream	98	110	117	134	114	85	109	102	137	96
CGGTACTTTCGTGCGA	alt_1819_upstream	5	20	9	4	14	3	11	7	14	7
AGATTCGTACCCTTGG	ref_1819_upstream	26	18	51	30	22	31	33	29	33	42
CGGATAAACCAAATGA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCTCCACGTGAAC	alt_1819_upstream	5	2	6	8	4	8	5	3	13	12
TGACAGACCACAACCG	alt_1819_upstream	17	14	21	16	16	19	25	10	21	15
CATTATGCTCGCCTAA	alt_1819_upstream	14	6	10	24	10	11	7	19	12	21
GATGGCACTAAACTAA	alt_1819_upstream	11	7	13	11	9	11	9	13	18	9
CAGTCATTCGGTACAG	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGGGATAGATGGT	alt_1819_upstream	66	47	85	60	28	69	66	56	46	34
GGAGAGCTGACTCCGC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCAATCTTTACCC	alt_1819_upstream	34	45	58	49	42	38	51	38	54	43
ATGCGCCGGAGCTTTT	alt_1819_upstream	18	10	18	5	15	13	14	15	14	8
AACAAAGACGTTGGCG	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CTATTTTCCTCCGACC	alt_1819_upstream	66	72	79	75	71	70	66	56	63	57
ATTTGTGATCTCCAAA	alt_1819_upstream	55	17	53	33	35	43	22	33	15	46
TCATCGGGGTCTACAC	alt_1819_upstream	53	29	53	39	32	50	33	29	37	42
AATTGATCGATTCGAT	alt_1819_upstream	233	176	276	253	197	237	227	233	201	214
TCTTGTCATTCGCCCT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TACAAGCTGCATGGTT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGTTTATAATCTA	alt_1819_upstream	49	22	40	33	49	35	32	46	30	27
CCGATCTGAGCATATC	alt_1819_upstream	27	29	31	35	24	23	34	28	12	24
TATTGGTCTAACACGA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CTCTATGGCCCGGCTT	alt_1819_upstream	33	12	40	29	15	42	25	26	23	39
GGCAAAGCGCCTCTCT	alt_1819_upstream	4	2	8	4	7	4	5	7	10	7
TATTTTGGGGTCACGC	alt_1819_upstream	23	20	29	15	13	21	20	20	17	14
TCACATCACGTCGATG	alt_1819_upstream	123	111	137	116	85	106	93	102	116	95
CTTTTATAGTTGATGG	alt_1819_upstream	6	1	7	3	1	2	1	3	5	4
TCAGTGAATATCTGTT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CATACCGTTATCCTCT	alt_1819_upstream	0	2	3	1	0	0	5	3	0	2
GTATTTGGGCGAGAAT	alt_1819_upstream	26	31	45	42	27	29	34	37	34	31
CATAATGTTGTGAATA	alt_1819_upstream	0	3	4	2	3	2	6	2	4	6
TTGTTTTTGATAACAG	alt_1819_upstream	102	69	94	90	57	94	88	89	87	80
GTATCAATTGGGGTAC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CATAAGTAAATCGACG	alt_1819_upstream	26	30	30	32	26	20	34	23	29	14
GTGAGTTTACTTCAAG	alt_1819_upstream	58	45	80	46	59	79	48	60	61	65
TACCCTACGTTAGTCG	alt_1819_upstream	39	15	38	25	15	25	25	18	21	33
TAACCTTGGAATAGGG	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CGTATCGTAGGGTCGA	alt_1819_upstream	72	39	81	73	47	57	54	55	58	49
TTCTAAGGTACTGCAC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGCTGAGCGGGTT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CATCCTGGCGCCACTT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCTTTATCTGTTC	ref_4354_missing	17	14	27	25	19	15	24	14	22	21
TAAAATAGCGCCCTTT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CCTGAATGCATTATTG	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
GAAAGCCCATCGTTAT	alt_1819_upstream	39	27	43	45	21	42	29	29	26	45
TGTGGCGTCAGCGCCT	alt_1819_upstream	2	2	5	2	1	2	1	1	0	1
ACGTGCTTCGCCATTG	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
ACCAATTGCGAATTAA	alt_1819_upstream	129	108	141	136	133	105	114	134	103	109
TAAGGGCACCATGCGC	alt_1819_upstream	3	1	0	3	0	4	1	2	1	2
TCGCATGTTCTTGCAC	alt_1819_upstream	100	79	127	95	83	92	95	74	86	71
AGGTAATGTTAGGCTC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTCGGCTTAGTG	alt_1819_upstream	46	49	47	46	53	37	58	51	58	40
CTTCCAATGTTTGATT	alt_1819_upstream	95	102	115	130	94	112	83	103	108	86
ATGGCCAAGCAAGCGG	alt_1819_upstream	25	26	36	39	26	39	44	20	48	24
TGCAACCGACGTCTAT	alt_1819_upstream	3	5	11	8	10	6	10	6	10	10
AGGCCTGCCGGGTCTA	alt_1819_upstream	43	37	45	43	32	27	23	41	26	30
TTGTTCCGAAAGGCAT	alt_1819_upstream	6	7	2	9	8	9	4	3	1	5
GACTTCATCAGCCGTA	alt_1819_upstream	56	57	57	65	44	59	46	43	48	32
TCTCGGGCCCTTTGCA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTAGCTAGCTCCC	alt_1819_upstream	15	14	20	13	20	13	7	11	8	9
TCCAACGTTTTCGAAA	alt_1819_upstream	18	20	31	11	13	18	15	20	13	8
CGTTCTCATCCTAGTG	ref_1819_upstream	281	203	345	287	215	270	196	296	227	254
CAACAGGTACTCGGGA	alt_1819_upstream	6	2	10	0	9	10	10	2	11	10
TGGCGGTTTGAAGTTC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
GGGCGATGCAAACTAC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
AGACTACCCTATGAGG	alt_1819_upstream	50	55	84	67	56	45	38	66	58	38
GGTCTCAGCCAAAACA	alt_1819_upstream	23	10	25	21	21	17	16	22	20	21
CATCTGACCTAAATGC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCATCCACGTATC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGATCTACTTTGT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTGCTCCTCCAC	alt_1819_upstream	120	128	153	149	133	129	134	112	119	131
TCTTGTCGTTTCCTGA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCTGTTGCCGAGC	alt_1819_upstream	13	14	13	9	8	8	5	17	15	8
GTCGATTGGTGCTTTG	alt_1819_upstream	24	20	31	26	32	24	32	37	21	27
GGCTGGTAGTATTCTC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGTTTTGGGGTGC	alt_1819_upstream	40	44	48	49	35	52	42	30	39	50
TGTAATGTTTCCCTCA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CTATTAAGCTGTCTCG	alt_1819_upstream	9	2	8	5	5	7	2	4	4	0
AGATCTCCCGCGATTT	alt_1819_upstream	18	25	13	16	21	12	26	10	29	14
TTCCCTTGATTCCCAA	alt_1819_upstream	26	16	18	11	11	15	13	21	10	25
TCACAGACTCGGAGAC	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTATGTTCATAAC	alt_1819_upstream	3	2	1	1	1	2	0	1	0	0
AGCAATGCAGTCTCGC	alt_1819_upstream	87	69	87	96	48	88	68	64	82	68
TAGCTGAGACCTAGAG	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGCTCGTCCTACT	alt_1819_upstream	4	4	6	6	11	7	6	3	7	9
ATCGCTTGTTCGCCTA	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
TCATACAGGTCTGCTG	alt_1819_upstream	20	17	16	22	23	21	22	15	23	23
GTTTACAGACTTGTCG	alt_1819_upstream	102	74	100	91	73	96	71	91	80	89
CGTAGATCCTTCAATT	alt_1819_upstream	66	49	60	64	43	53	54	38	59	52
TGTACCATTAGCATAG	alt_1819_upstream	46	46	53	60	45	43	58	56	65	47
TGGCAGCGGTTCATCT	alt_1819_upstream	21	8	32	20	14	8	16	12	25	13
TCATACCTAGTCCCAT	alt_1819_upstream	91	76	105	85	78	71	84	87	65	70
TTCAGGCGCAGTGCAT	alt_1819_upstream	5	8	11	7	7	5	4	8	14	5
TTGGCTACCATGTATG	alt_1819_upstream	7	3	7	5	5	5	10	10	10	8
GAGATACCGTGTGACC	alt_1819_upstream	69	47	85	70	57	55	47	58	48	47
GTTCTCTTGTCCTGTT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTGTTAGTCTTTA	alt_1819_upstream	1	6	0	7	7	3	8	0	16	1
ACATGGCTCCTCTCAT	alt_1819_upstream	0	0	0	0	0	0	0	0	0	0
GATCATCGTGGCTCCG	ref_862_reverse	35	32	66	42	36	30	38	29	45	36
CAGAGCAGGCGTTCTT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GATCGGAGAAGAGAGG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ATATGCCGTTAAGTAT	ref_862_reverse	26	29	39	33	19	33	31	32	28	24
AAGTTAGCATTTCTGT	ref_862_reverse	4	3	4	5	12	9	6	4	6	6
GCAGCTCGCTTGTCAC	ref_862_reverse	16	12	24	20	20	16	24	11	26	19
ATTCCAAGCTCGTTTC	ref_862_reverse	13	10	18	8	17	11	13	10	17	9
CATTATGCCCCCATCT	alt_862_reverse	44	26	52	47	30	38	32	42	40	50
GAGCATCCGCCGTCCG	ref_862_reverse	36	33	45	21	40	28	43	34	40	30
GCGCCTGTACGTGAAT	ref_862_reverse	0	2	0	1	2	0	1	0	1	0
CTTCTTACCGCAGCAA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCTTGTTCTGAAG	ref_862_reverse	14	21	20	17	19	24	13	26	32	10
GCAGCCACATCTTGAA	ref_862_reverse	11	18	27	13	13	14	19	16	20	13
TAACTTGGTTCACCTA	ref_862_reverse	16	35	39	23	42	21	33	30	26	24
TCGCTTTCTGTTGTTC	ref_862_reverse	33	121	31	42	110	26	110	21	127	35
GCGCCCGTGAGGATAG	ref_862_reverse	40	45	81	67	54	56	73	59	53	64
TGAGGCTGTGTTTCGT	ref_862_reverse	410	347	536	436	391	401	395	365	428	354
CAGAAATTTGGGGCCC	alt_862_reverse	97	97	115	113	101	96	108	98	117	86
TTGCAGCTCTAACCCG	ref_862_reverse	54	81	99	80	99	75	88	71	90	66
AAACCGTAGACCTTAC	ref_862_reverse	12	11	12	8	14	9	8	8	17	6
AATGTGTTCTTGTAAT	ref_862_reverse	53	49	48	40	36	32	33	33	62	35
GCCACCAATTTTCGAG	ref_862_reverse	11	13	12	8	11	18	7	8	12	10
ATAATGTGTTTGGCGA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTTGCGTTATCCG	ref_862_reverse	19	26	25	24	28	24	32	27	41	9
GACTACATACCGGAGT	alt_862_reverse	39	18	22	25	19	15	26	23	33	21
CGCTTTATGCCCGAAC	ref_862_reverse	30	25	31	23	33	28	30	23	41	28
TGCGAAAGATCTTAAA	alt_862_reverse	67	52	70	40	44	49	41	45	48	38
TTATTGGCGACTGGTA	ref_862_reverse	27	29	24	18	18	24	23	19	34	16
GGCAAGGACGTGGTTC	ref_862_reverse	79	67	100	89	51	76	62	64	56	54
CGGGTGACAATGGCCC	ref_862_reverse	114	96	115	128	82	64	76	104	93	88
TAGCTCACAGATCTGG	ref_862_reverse	260	210	322	253	244	272	259	246	284	262
CACAAGGAGTAGTATA	ref_862_reverse	43	33	40	47	24	14	30	29	28	34
GAATTTTAAGTCCTCT	ref_862_reverse	12	6	12	11	7	14	8	14	3	11
TTTTTTCAGGGGCCGC	ref_862_reverse	27	22	22	27	17	20	13	22	24	12
AACACGGACTAATTTT	ref_862_reverse	0	0	1	1	3	2	1	1	3	2
CTCTCCCGCGTTTAGT	ref_862_reverse	61	82	89	75	88	66	108	59	97	57
CAGGGCGGTTGCTCGG	ref_862_reverse	88	97	105	119	69	81	89	87	80	75
CCGAATAGTTTTATCT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TTACGCTCGGACACAG	ref_862_reverse	190	176	258	206	142	191	146	188	163	142
ACCACGCTACCCGGCC	ref_862_reverse	25	34	33	31	30	40	41	28	25	27
GCTTAGAATTGTCTTT	ref_862_reverse	20	24	41	26	28	28	24	26	24	29
CATTCGGGGCCCTGGA	alt_862_reverse	127	108	145	160	104	107	120	92	116	114
ATTTGGCTCAGTTCTG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CCTACCCCTGGGGGCT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTTAGTTCCGCAG	ref_862_reverse	1	0	0	0	1	1	2	2	2	2
GACCCAGTGATAACCT	ref_862_reverse	293	296	359	277	328	294	287	256	327	263
CACAGGCTGGACTCCC	ref_862_reverse	6	48	6	3	82	4	59	6	67	6
CCCCTTCTGTGAATCG	ref_862_reverse	0	4	2	4	0	3	3	0	3	5
GGCAATACATTCATGG	ref_862_reverse	22	23	30	33	30	31	36	42	28	27
AGCTTGGTCAGATTAG	ref_862_reverse	12	10	12	17	8	13	5	14	13	17
TGGGATTTTGCTCCTT	ref_862_reverse	9	10	10	12	15	16	22	14	14	10
ATACTCTGATGCGAAG	ref_862_reverse	6	16	14	14	12	18	20	11	6	12
TTACAGTTAAAAAGGC	ref_862_reverse	16	16	40	47	18	21	28	29	23	23
AGGGCAATTGTCATAA	ref_862_reverse	80	102	127	92	108	87	85	91	114	96
CCCCCTTATAGTTCGT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCTGCCACACGAA	ref_862_reverse	36	34	53	32	47	50	40	43	40	47
GGTTCTCTGTCTTTTT	ref_862_reverse	52	38	70	52	39	60	59	61	41	66
GCAAGTCGGTCTTGTC	ref_862_reverse	6	6	6	6	6	3	7	7	5	3
ACATCGTTAACTTTCA	ref_862_reverse	50	47	54	57	41	55	49	56	46	49
TTATCACCCCGTCCTC	ref_862_reverse	19	17	17	8	16	11	27	12	16	16
ATTTATTTTGATAGGT	ref_862_reverse	121	112	201	161	133	180	133	183	118	140
CTTCCGGTTTGAATGA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TAGAATGCATGGGTTT	ref_862_reverse	21	20	32	20	26	20	38	23	27	15
TTATTAAACCATTCTC	ref_862_reverse	22	29	37	31	35	25	39	19	48	23
CCGGATACGGTTTTGC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TGTCATACACAGCTGT	ref_862_reverse	11	1	6	1	7	3	2	1	6	0
CTTTTACGGCGTTTCC	ref_862_reverse	76	54	97	98	87	89	63	68	81	78
AGGCTACCCGTCAACG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTTCCCAGCTCC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTGATTTGAAGTG	ref_862_reverse	23	21	18	21	35	18	21	12	29	24
TTGGTGTCCGTAGCGC	ref_862_reverse	11	15	18	13	11	15	10	13	3	18
ATGTAATGGTCCTTCG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTCAACATAGACA	ref_862_reverse	35	18	51	31	32	32	44	30	32	32
GGTCATGTTACGAAGG	ref_862_reverse	117	110	164	116	94	129	112	110	108	113
CATAGCCTTTTCTTTT	ref_862_reverse	165	109	191	152	120	136	144	138	124	164
GCTTTTAGGCTCTGCT	ref_862_reverse	295	327	409	393	374	343	302	334	371	324
TTTTAAATGTTGTTAT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGGAAGTTGTGTA	ref_862_reverse	26	16	25	26	7	20	18	20	19	23
CTACATCCCTATCCAC	ref_862_reverse	8	8	12	2	19	3	21	5	19	7
CCAACCCTATTCTATC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGAGTACGCAATC	ref_862_reverse	5	7	3	4	5	7	6	0	7	5
ATTATCGTTCAGCGGA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TGCACATTGGTGTTGG	ref_862_reverse	16	20	23	19	14	8	10	11	19	12
GGCACATGGGTAGGTG	alt_862_reverse	33	32	50	24	52	36	49	29	36	41
GCTTTACCGCATAATT	ref_862_reverse	65	78	78	70	112	55	81	60	84	58
GATTTGTCCGGATTTG	ref_862_reverse	77	67	69	63	58	55	62	64	67	80
GACCTGTTTTTGGTCA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ACATACTCGAAACGAG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GCGGATTGATAGAGAC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCTCGTTACATAA	ref_862_reverse	89	110	104	93	96	76	99	75	117	80
CTCCAATCGATGTAGT	ref_862_reverse	112	123	115	100	125	64	134	99	123	96
TGAATGGCGCGCATCT	ref_862_reverse	67	63	84	62	58	66	34	48	65	54
CCGTCTGGCAAGTTTG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGTGCGGCGGTTA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGGAGTCCTCAACATG	ref_862_reverse	21	30	26	14	22	23	38	26	29	23
CACCGATTGTAGCATG	ref_862_reverse	173	130	158	122	135	115	162	159	149	144
AAGGAATGGTCAAAGT	ref_862_reverse	65	43	80	48	35	56	43	66	63	53
GCCCTCAGCATCAATT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GCAACACTTTGATGTG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGGCTTATTACCTTAA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGTATGTGTCCAG	ref_862_reverse	13	14	18	17	18	16	20	23	17	16
TTGCCGCGTGCTCGGG	ref_862_reverse	12	16	21	17	13	11	12	18	14	13
TAGTTGCCAGCCTTTC	ref_862_reverse	58	50	67	67	41	45	45	65	36	54
TCGACACGCCTTAATC	ref_862_reverse	62	41	54	65	34	48	35	57	54	51
GACCGAGTGATAACCT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTTAGATCCGAAT	ref_862_reverse	47	38	65	52	41	49	34	63	49	59
AATAAAGCGTAATACG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCGCCCTGTCAAA	ref_862_reverse	45	40	35	46	38	43	38	37	32	30
TAGGTGTCAATGTGGG	ref_862_reverse	270	308	355	290	319	267	332	276	371	249
GTGCAGCAGGGTACGC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTCTTAAGCTGAC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTCCGCGGGGGAA	ref_862_reverse	55	40	60	51	49	45	41	58	40	45
GTGTATTAGTAAAAAT	ref_862_reverse	7	13	16	14	11	8	5	8	13	7
CGAATATGTCCACCGG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CTAATTGAGAGTGTCT	ref_862_reverse	139	109	139	158	141	121	146	122	136	131
CTGAGGGCCGTTACTA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TAAAGAGGTCGGATGT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCGAACACTTAGT	ref_862_reverse	33	13	25	29	19	25	28	16	16	21
GGCGAACGTCACTTCA	ref_862_reverse	113	105	134	141	108	119	87	137	118	130
GTCAACTCTTTAGGCG	ref_862_reverse	13	11	26	10	12	14	12	10	21	17
ATAGTTTGTCCGAACT	ref_862_reverse	57	74	80	58	60	60	73	58	72	62
GGCGATGTCGTTTTAA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ACTCGTCCCCTGAATC	ref_862_reverse	20	43	12	15	41	18	41	14	31	13
ATTCGCGTTATCTTTT	ref_862_reverse	11	9	10	14	13	9	11	9	6	11
CGCCTTGTCGTGGTCT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCATAACGGAGTG	ref_862_reverse	28	17	33	35	32	17	24	28	25	47
AATTGGTTACAGGAGC	ref_862_reverse	61	56	77	78	49	70	61	49	72	66
ATAAAAATCGCAAGCG	ref_862_reverse	14	5	11	8	13	11	9	13	11	10
GGAAGCGCTCTCCCCT	ref_862_reverse	22	21	30	29	21	17	19	31	17	15
GTCGTCAATTCAGTGG	ref_862_reverse	171	154	221	170	140	145	167	160	168	170
ATCTCGATACAGATAG	ref_862_reverse	12	16	16	9	9	9	14	11	16	12
CCCCCGTTTCTGAGCC	ref_862_reverse	7	5	1	8	6	1	8	8	3	5
AGGACAGCGCGGTATC	ref_862_reverse	26	24	24	25	22	24	21	7	20	18
CTGGACCTTTCTCCGA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTCGTCCCTCTAA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GTGTATTTACTTAAGT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ATGGATGGGGAGGTGG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTCTTGACAACTT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTGGGACCACGTA	ref_862_reverse	29	30	27	33	27	16	34	20	30	22
TCATTCTTCTTTCATC	ref_862_reverse	20	16	19	17	19	18	8	17	14	21
CGATGCAGGCGCCTGG	ref_862_reverse	21	20	17	7	10	18	8	6	13	10
ATGGTGTATGCCGGAC	ref_862_reverse	8	12	10	13	10	8	5	6	10	4
GGAACTATCCCATTGT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ATTATATGTTTGTTTG	ref_862_reverse	68	55	73	59	60	64	52	53	55	57
ATCTTCCCTTGCTGAC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGATCAATCCACTGCC	ref_862_reverse	20	28	22	16	25	25	20	15	26	17
ACCGTATCTTGTCTCG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ACGAATTTCCCTTCTC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGCTGCTTTTCGG	ref_862_reverse	60	63	71	47	52	44	56	57	52	46
TTAAGCAACGTTTGAG	ref_862_reverse	85	101	117	115	118	79	119	92	108	84
TGCTCGATCATGGCAG	ref_862_reverse	32	28	35	44	20	26	36	19	23	28
CTCCGACTTTTCGCTT	ref_862_reverse	18	26	23	30	33	22	30	17	38	19
CACCCCCTACGACCCA	ref_862_reverse	191	165	234	201	197	187	174	182	202	172
CTTTTCAATTCCACTG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTTAGTTGGGCTC	ref_862_reverse	6	5	13	6	3	10	6	8	4	6
TATCGCCCCTCCCGTG	ref_862_reverse	7	10	11	3	9	6	12	0	6	4
GACCAAACATTAGAGT	ref_862_reverse	69	77	105	87	96	75	91	79	99	68
ACGGTTATTCGTTAAG	ref_862_reverse	75	62	71	70	59	60	59	62	79	58
AGCTAGCTCGCGTCTA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCAATAGGTTCTT	ref_862_reverse	17	7	10	17	18	8	11	14	12	3
TCTTCTAGCCAACGTG	ref_862_reverse	45	45	62	68	47	32	46	60	63	40
CTACACTTATGATCCT	ref_862_reverse	7	0	8	3	5	4	5	5	5	10
CAATGGATAGTTTACA	ref_862_reverse	26	33	37	37	26	23	29	27	27	33
AAAAATTGTCTTGCCA	ref_862_reverse	2	1	2	5	0	2	3	0	3	3
CGCGAGGCGTCTGCAG	ref_862_reverse	10	6	11	8	8	3	5	11	14	8
AGATATTTTGGTTTCT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGTAGCGTTCCCG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGCGATTTCAATG	ref_862_reverse	39	47	53	47	35	42	29	34	31	31
AGTTTAGACCTTCCGT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CAAATTCTTTAGTTTT	ref_862_reverse	140	136	206	170	156	147	142	124	127	109
CTTGTTGACCTCCGTT	ref_862_reverse	62	58	58	76	62	54	60	61	79	50
ATCGTTAAATTACGTG	ref_862_reverse	50	42	59	33	37	43	26	24	30	33
ACATGGAAACTTGGCT	ref_862_reverse	21	21	39	28	18	29	19	24	24	34
GGGGCATTTAGCTAGC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGTGTTCCATAAC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTGATGTCCCATT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTCAATGTATTCG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TTATAACCTTCACAAG	ref_862_reverse	24	26	35	26	26	26	28	21	26	20
CGGCTAGCTCCCGTTA	ref_862_reverse	16	26	41	29	25	29	35	28	25	23
GGCGACCTGTGAGCGA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GCCAATTTGTGACTCG	ref_862_reverse	28	28	57	35	47	34	41	32	37	38
ACGTTGGACGAACCCA	ref_862_reverse	58	31	71	66	49	59	58	73	57	42
TCTGTTTGGACTTCTT	ref_862_reverse	10	10	7	12	18	13	9	6	21	11
AGTCTGTAGTGCGATT	ref_862_reverse	4	15	13	15	11	12	4	7	15	9
GGGCAAGACTTATCCT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CGTCAGTCAGACTTCA	ref_862_reverse	16	18	13	18	14	9	13	11	26	16
GCATCGTCAGTAGCTA	ref_862_reverse	106	93	117	114	104	109	140	81	96	103
TGTATGGACCCCGAAA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TACGAATCAACAGCCT	ref_862_reverse	7	9	7	13	11	9	13	6	12	7
AATAAGTTCAGGCGGC	ref_862_reverse	71	71	86	62	66	78	77	70	77	56
CCCACTACGTGAGGCG	ref_862_reverse	29	22	35	26	14	31	26	30	17	29
ACTGTGGACTGTTTTA	ref_862_reverse	21	32	29	18	34	27	28	32	25	26
CACTTCTCAGAACTCT	ref_862_reverse	28	22	37	18	26	22	22	23	28	18
TCTTAAGATGTAGGCG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGGTATCTAACCC	ref_862_reverse	1	2	1	0	2	3	4	1	0	7
TATCCGCTGCCTGCAC	ref_862_reverse	27	25	45	35	31	36	35	30	31	46
CGCGCGTTGCATAGCG	ref_862_reverse	50	41	56	36	58	28	50	49	56	37
GCGCTCTGTGGACTAG	ref_862_reverse	7	13	21	14	11	6	13	13	10	8
ATACCTGAGTTAGTTG	ref_862_reverse	17	31	23	25	19	36	25	21	41	25
TGGGCCGTTAATCGCG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
CTTACGGCTATAATAA	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTACCATATTCGC	ref_862_reverse	28	16	11	11	17	18	18	23	23	14
CATCGACAGGTATGAG	ref_862_reverse	121	80	137	111	96	97	98	107	115	125
CCAGAGTTTAATTTGT	alt_862_reverse	14	16	19	20	21	13	19	9	21	11
CCTGGATTGTCCATCT	ref_862_reverse	86	79	92	75	90	85	89	84	92	75
GTGTATACTTGGTATG	ref_862_reverse	30	47	46	47	54	37	39	31	32	21
TGAGGCACGGCTTACT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TCAACGATTGCCAACA	ref_862_reverse	7	7	7	10	2	4	5	5	9	5
CCGCTTATGGTTCGGG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GAAATGTCCGTTCAGG	ref_862_reverse	53	57	63	70	61	54	45	49	54	39
AACGTCTCCGGGACAC	ref_862_reverse	17	18	17	17	19	10	16	10	10	9
CGTAGCCTTAGAGCAC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTTGTTCTGTATC	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
TAAACTGTTAGATTAT	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GTGTAAGTCCCTACCA	ref_862_reverse	133	101	153	110	112	100	116	91	124	122
CACCGTCCAGTTTGCG	ref_862_reverse	131	125	182	134	105	124	150	133	182	137
GGTCATTTGTGTACTT	ref_862_reverse	67	38	57	52	44	46	52	40	70	42
TGCTTTCGCATGCAGA	ref_862_reverse	120	123	159	116	141	101	121	117	132	84
GACATTTGGTTAGATG	ref_862_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTTAGACTTGTTT	ref_862_reverse	9	7	20	16	11	9	16	15	10	11
TGTCGTTCTCATCCAC	ref_862_reverse	95	69	125	99	94	109	74	98	75	74
CGGGGAGTATAATGTT	ref_862_reverse	2	9	7	2	4	3	6	3	6	4
CTCACGTATGAAGAAG	ref_862_reverse	26	15	36	27	23	33	21	19	24	24
TGTCCGCTGGATTTAC	alt_5677_new	19	35	28	29	19	31	38	23	27	21
CAAGTCGTGCTTAGCG	alt_5677_new	0	0	0	0	0	0	0	0	0	0
CGCCCGCACGCTTATG	alt_5677_new	12	4	11	11	7	8	11	12	11	17
TATTCGATTGGCACGA	alt_5677_new	204	203	267	189	182	194	236	144	204	147
GCATTCCTCGGCACTT	alt_5677_new	15	18	16	22	20	22	14	12	15	15
TTAACGCAGAGCTTCG	alt_5677_new	111	96	116	98	78	104	71	98	117	75
ATCGAAGCTGAGCGGC	alt_5677_new	107	91	84	92	75	61	103	66	90	87
CATCTCCATCTGGCAC	alt_5677_new	26	20	32	24	12	36	19	19	36	18
TTACAGGTACGTCAAA	alt_5677_new	6	3	10	5	5	9	7	3	7	3
TGCTGAATCGCTTCCT	alt_5677_new	185	211	216	180	194	216	217	191	186	192
TTAACATGTGCACATT	alt_5677_new	9	7	11	18	8	11	17	6	9	4
CGGCAACGTTGGCCTA	alt_5677_new	0	0	0	0	0	0	0	0	0	0
TAACTTATAATCTATG	alt_5677_new	30	25	21	30	25	22	23	29	13	32
TTAATATTGGAGGTGC	alt_5677_new	34	28	41	29	32	26	37	36	36	24
AGATCTAACGCCCTCT	alt_5677_new	20	23	34	19	28	25	29	28	29	15
GATTTGTCCGCTTAGC	alt_5677_new	11	5	5	3	8	5	7	5	10	4
CCATAGTGCGTAATTC	alt_5677_new	0	0	0	0	0	0	0	0	0	0
CTCGTACAGTTGTTAT	alt_5677_new	14	8	18	10	15	5	14	19	8	12
TAATTGAAACAATTAT	alt_5677_new	20	9	17	13	15	15	12	11	12	10
CCGCATTGTACTAGGT	alt_5677_new	0	0	0	0	0	0	0	0	0	0
CATTCATCTGCCGTAT	alt_5677_new	27	71	33	28	57	21	70	26	88	24
TGAGAGGAGCTTTGAA	alt_5677_new	23	41	44	29	36	39	28	32	34	34
GAATATATTGGGTCTA	alt_5677_new	206	216	247	232	229	210	232	200	235	170
TGCTAATATGGGCAAT	alt_5677_new	11	30	18	18	26	15	24	15	24	7
TAGCTATTGCCATGGG	alt_5677_new	19	12	31	24	18	15	20	17	19	17
TACACCGTTCTAATCG	alt_5677_new	9	5	8	13	5	4	16	13	7	9
GTTTACGGCACCTACA	alt_5677_new	21	23	28	16	17	22	24	18	24	17
ATAGGGTCTTTTCGGG	alt_5677_new	12	15	20	16	19	18	12	13	17	13
CCTTAAAGCTTGTGTT	alt_5677_new	71	90	92	105	107	90	114	87	84	69
GGTGTACTGTATGCTT	alt_5677_new	26	24	38	33	35	27	31	18	35	42
TGTTCCAGCATCCGTG	alt_5677_new	0	0	0	0	0	0	0	0	0	0
CCTCCCCGATCTCTGT	alt_5677_new	4	9	7	2	10	2	9	5	15	4
TAATCGCCGTGGTTAG	alt_5677_new	78	109	112	108	100	91	116	98	141	76
GATTTTCCTTGTTCCT	alt_5677_new	35	44	39	62	34	32	34	38	43	35
ATTACTTCGTCTAGGA	alt_5677_new	4	1	1	1	5	3	1	4	5	2
TGCTTCCGTGATAAGC	alt_5677_new	0	0	0	0	0	0	0	0	0	0
CAGTACTTTCGCGCAA	alt_5677_new	29	49	36	36	41	35	31	39	36	31
GGTAGTACTCCGGCGA	alt_5677_new	0	0	0	0	0	0	0	0	0	0
TAGGGTAGCATAAGCA	alt_5677_new	10	18	25	20	15	15	17	12	12	8
AGAGAAAAAGGTGCGA	alt_5677_new	43	46	54	42	56	49	51	36	49	46
CGTGATCACAGTTTCC	alt_5677_new	53	66	63	58	61	50	50	45	55	52
GGAAGTCGTTTGGGTT	alt_5677_new	36	52	49	41	31	40	43	31	48	35
CCTGTTCCCCGGTCAG	alt_5677_new	16	19	18	20	17	16	20	14	14	24
TAGTAGGTTTGGAATA	alt_5677_new	0	0	0	0	0	0	0	0	0	0
AGTCATTTCTTCCCTA	alt_5677_new	22	19	38	19	24	20	16	14	15	21
TGATAAATCCTTATCC	alt_5677_new	0	0	0	0	0	0	0	0	0	0
AGTTTGTCTATGAAGA	alt_5677_new	0	0	0	0	0	0	0	0	0	0
TCGTTGCAGCAGACGT	alt_5677_new	0	0	0	0	0	0	0	0	0	0
AACGGCTGATATCATT	alt_5677_new	46	52	59	70	48	65	57	57	47	50
CATCTCCATCTGAGTC	alt_5677_new	0	0	0	0	0	0	0	0	0	0
CGGTCGGTCGCCGGGC	alt_5677_new	0	0	0	0	0	0	0	0	0	0
TCCGCTCCAACAGCTT	alt_5677_new	15	15	23	22	19	14	29	16	20	19
TTTTTGTACGCTCAGT	alt_5677_new	194	231	259	232	255	212	218	187	245	192
GACCCGAGTTACTATA	alt_5677_new	69	56	68	71	83	43	59	36	56	44
GGTCTTAGCCGTCTCT	alt_5677_new	103	111	107	112	125	97	122	93	94	76
CGATCGTAGGGTACAA	alt_5677_new	0	0	0	0	0	0	0	0	0	0
AATGCGAGCGCGCTCA	alt_5677_new	118	148	136	113	133	133	169	112	150	117
GTTTTGCGCAGTTTCC	alt_5677_new	44	59	44	39	37	37	66	48	50	40
GTACCGTATGTCTAAT	alt_5677_new	156	161	182	169	177	161	157	134	180	142
TCCTACGATGACCTTT	alt_5677_new	0	0	0	0	0	0	0	0	0	0
ACGACTATTGCCTGCC	alt_5699_new	10	10	11	8	9	6	15	10	13	18
TCCCTACCACGTGCAC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GCTTATCAGAAGGGCC	alt_5699_new	17	7	14	10	7	9	12	8	16	8
TAAGTCAGGTTCAGGA	alt_5699_new	18	22	14	9	16	15	18	11	12	4
GCGGTGATCGAGTGTT	alt_5699_new	16	9	20	14	15	11	19	20	7	16
CTCTGATGCCGAACTT	alt_5699_new	21	20	22	27	24	25	16	24	20	16
GATATAATCTATATTA	alt_5699_new	2	4	1	1	8	2	1	1	0	4
TATTACGAGTCTCCGC	alt_5699_new	3	4	2	2	4	1	2	2	6	3
AATTTACTGGCTGGTT	alt_5699_new	24	20	37	23	28	21	15	22	32	16
GTTTAAGACGACCGTC	alt_5699_new	18	18	20	15	18	14	23	15	27	12
ACTGTCAATCTTCTTC	alt_5699_new	10	7	20	11	15	12	21	7	5	7
TGTCGTTCGCTTACCT	alt_5699_new	1	2	1	0	2	0	0	0	0	0
GCCTGTATTAAAGCAT	alt_5699_new	5	7	24	14	14	12	21	11	14	13
ATCTATCGGGGCCTCT	alt_5699_new	3	7	6	3	3	3	13	10	6	11
GTGGTGCTTATGCGTA	alt_5699_new	1	0	3	2	4	5	2	3	4	2
TCGTGTATACCTTTGG	alt_5699_new	13	18	19	15	21	12	26	17	27	8
TTTAAAGCACAGGTTT	alt_5699_new	0	1	0	0	0	0	0	0	0	0
TGTGCTTTGCCTGGCT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TAACCAGCACTTCAGG	alt_5699_new	55	50	55	40	72	55	71	58	84	47
TTTTCATCGAACCCTC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TAAATACGGTAGTTGA	alt_5699_new	6	4	3	5	0	4	5	5	9	2
TGTTGTGTTCGTTTAT	alt_5699_new	43	36	35	38	45	25	51	22	33	29
GCACGGGTGGAAGTGT	alt_5699_new	22	38	26	19	30	28	32	20	38	29
TGTATAAAATTAGGTA	alt_5699_new	18	36	36	31	33	32	29	20	24	21
TTTGTATTAGGATAGA	alt_5699_new	24	25	43	28	34	25	47	25	40	23
GCTTATCTTCCTTCTA	alt_5699_new	38	30	54	44	70	49	52	44	48	39
CGCCACTACTATTCAC	alt_5699_new	6	3	2	1	6	5	3	6	3	4
GGGCTCTGGTCACTCT	alt_5699_new	4	8	6	3	4	2	9	6	11	8
TGTTCGTTCAATGTTG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CAGCAGTTGTCGTTGG	alt_5699_new	16	28	21	11	37	10	19	17	25	9
TAATATCCCTATCTCC	alt_5699_new	7	11	14	8	8	10	6	9	6	11
GCGGGATGTAATGTTA	alt_5699_new	44	45	52	39	38	38	48	32	34	39
CTGGTAACCCTAGTCG	alt_5699_new	3	4	10	5	7	4	11	6	5	8
GCTAAAGGCGTGATTA	alt_5699_new	43	78	79	78	91	65	75	44	83	53
CACGTGCCTTCCTGGC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TCTCGATGTCAGAGGC	alt_5699_new	34	32	48	21	39	35	50	28	36	19
ACGCTGGACAGTGCTT	alt_5699_new	3	6	2	6	10	7	7	4	8	4
GCCCCCTAGTAACTGT	alt_5699_new	25	23	28	21	22	23	20	22	37	22
GTGGCCACTTTCCGTC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TAGACTTGAATTTATT	alt_5699_new	16	23	32	15	17	17	36	22	36	17
TTTCTTCTTAAATCTG	alt_5699_new	12	19	17	15	16	26	14	17	20	19
GGCTGGATTGTTATGA	alt_5699_new	12	17	20	21	13	15	18	19	19	20
GACTACGCCCGTTACT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GTAGTTTAGATATGTC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CTTGGGCTATTCTTAT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CACCGTTACATCGTGT	ref_5699_new	4	8	3	5	4	7	6	7	5	5
ACGCTAATCCCCCACA	alt_5699_new	62	120	123	93	97	85	132	76	107	72
CTGGCAGTAAAAGGGG	alt_5699_new	12	17	14	8	19	12	13	12	12	13
GCGGCCTCTTGACGTG	alt_5699_new	14	20	13	15	27	12	26	22	20	10
TTATGTGCAACATAGT	alt_5699_new	14	28	14	20	22	15	29	15	31	10
CGCTCTAGTATATCCG	alt_5699_new	8	4	7	5	6	4	12	2	0	1
GTGTTTATCTTAGGTG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GGAATTTCAGGCAGTT	alt_5699_new	32	52	45	43	33	36	33	22	39	37
ATCGTGCTGTTTCCAC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CCTGCGCTTTCATCGT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TTTAACGTTCGCCAGT	alt_5699_new	8	26	21	21	17	22	28	16	19	9
CTGGAAGTATACCCGG	alt_5699_new	56	84	74	59	80	46	85	55	73	54
TTGGAGTGCCAGAGAC	alt_5699_new	10	5	11	4	15	5	4	5	9	7
AAGGTAAGTCCCGTAC	alt_5699_new	3	13	6	1	1	1	7	1	5	2
GGCATCGTCACTTTGT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TATCTTGGTGCAAACG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CTGGTATGTAAACCCA	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GTCGGTGCGCTCCGAT	alt_5699_new	34	41	32	41	33	35	51	35	40	23
TGTATCCACAATTTGA	alt_5699_new	28	39	36	22	37	28	31	18	38	18
TCAACAGAGCGGGCAA	alt_5699_new	139	125	159	126	145	121	140	122	169	129
CCCAGTCACGTTTAAC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GAGTAGTCCTTGTTAC	alt_5699_new	109	144	125	139	160	122	166	115	149	114
TCTGGTGAGGGTTATA	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TGCTTTCTCCACAATA	alt_5699_new	6	14	8	11	18	15	5	6	18	9
GAATAAGTGCTGTTAT	alt_5699_new	0	3	2	1	0	1	3	2	3	2
AAGTCACGTCTTGCGT	alt_5699_new	14	12	11	13	14	21	12	13	17	7
CTTTGTAGTACAGCGA	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GCTTGACATCTAGGTA	alt_5699_new	2	1	2	0	1	2	3	0	1	2
CTCAGCGGAAGCTTCA	alt_5699_new	30	48	51	35	57	41	44	34	61	27
GTAGAATTGCCCGGAT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TGGGTGGACGTAACAG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CGCGTCGATGTTATGT	alt_5699_new	2	0	3	3	7	6	6	3	6	2
TCTATAAAGGTATGTA	alt_5699_new	6	12	15	9	18	11	13	15	11	7
CTCTTTCTTTGCCATT	alt_5699_new	2	6	7	1	4	2	7	2	3	1
TCGTGTCGGGGTGTTT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TAATTAGCTGCCTCGT	alt_5699_new	11	16	15	14	10	14	26	17	11	9
CTTCTCGCGGAAATCG	alt_5699_new	53	41	65	40	53	48	53	42	60	61
ACACTCTAATGTCAGT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CCTGGTATCTTTTCAT	alt_5699_new	26	41	31	44	41	29	42	36	49	23
CTATAGTCCATGATAG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
AGTTGATAAAATGGTT	alt_5699_new	9	3	12	11	1	3	13	6	10	10
TTTGATACCGCTCGGC	alt_5699_new	24	27	20	27	22	15	33	21	40	23
AACTGTTCCTTAATTC	alt_5699_new	19	19	26	25	15	22	32	16	16	17
ACCGTTTTGTACTCAT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GCTTCTAGGGTACTCG	alt_5699_new	14	22	27	8	19	11	25	6	27	21
AACTTCTAGAACAGTT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CCACCAGCACTATTAC	alt_5699_new	34	56	40	55	72	43	59	46	61	40
TCGTAAGTCGATGACT	alt_5699_new	30	36	39	26	34	33	24	30	25	22
GGGTACGGGAACTCAC	alt_5699_new	28	35	26	32	33	23	36	26	26	31
GCCATGTCAGCTCGCC	alt_5699_new	71	82	83	71	98	74	81	78	99	64
AAAGCATCAAACTACA	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TCTCCTTTTGTACCAC	alt_5699_new	5	4	2	2	5	2	0	1	3	2
CGCGTATCATGCGACG	alt_5699_new	11	22	19	15	20	12	14	10	11	16
ATTCCTCCCCACCGAC	alt_5699_new	7	24	13	14	28	9	20	11	39	7
TAAGCTTTAAGCGATC	alt_5699_new	32	42	48	40	42	34	44	18	38	38
TTTGTATGCGGATGTT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TTCTCTTGGGAAGTGT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CCAGGTTAGTCCTCGG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CAATACAGAACAGAGG	alt_5699_new	14	25	32	23	22	19	16	19	18	16
CGCCTCAAACGTGTTA	alt_5699_new	13	15	20	18	24	10	17	11	31	14
AATCTTGTGTTCCAGT	alt_5699_new	27	25	39	28	37	26	38	26	36	22
TCAAGTATAAGGGAAC	alt_5699_new	18	10	8	9	9	11	16	8	22	10
ACGGTCTACCTACCGG	alt_5699_new	11	50	35	21	54	20	58	32	45	26
GGTTATGGTGAATTAC	alt_5699_new	10	10	10	9	7	7	12	4	19	8
CCAGTATAGTTTGCCA	alt_5699_new	1	7	4	2	4	1	7	4	6	5
GTAGATATTCGCCTGT	alt_5699_new	60	83	89	77	92	71	99	59	93	66
CATGGGATCTATGATT	alt_5699_new	16	14	16	7	13	17	19	19	21	10
TATAGTTCATCTACTA	alt_5699_new	5	18	17	24	12	12	21	12	20	13
GACGATGGGGCATAGC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TGTTGGGATACGTTTA	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TAACGTGCTCATGTTT	alt_5699_new	31	34	40	26	36	16	29	24	30	19
GGGTCAAGTGTACAAA	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CTGTGTTCAGACGTTA	alt_5699_new	12	20	24	30	33	15	24	13	25	23
CCTGCTAAGCTTGTGG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TCAAGTAACCTTTGAC	alt_5699_new	13	5	6	13	8	4	8	4	6	7
ACTGCTTTTGGTTTGG	alt_5699_new	53	64	54	47	63	51	76	43	88	51
CCCAGCTTATGTTGGT	ref_5699_new	56	83	66	71	98	47	101	65	85	56
GAGTAATGACCTGTGT	alt_5699_new	16	9	11	9	10	9	18	11	22	11
CCTTTGACCATCCTGG	alt_5699_new	3	14	4	3	11	6	5	2	2	13
TCTAGTTGGATAGGCT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TTAGGCTTTAATTTTT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CTTTGCGCTGGCTTGG	alt_5699_new	53	63	46	63	66	50	63	50	56	56
TATTTCGTATTATATG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GCTTATTCCATACGGT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GATTCCAAGCATTTGC	alt_5699_new	28	36	39	36	38	25	19	24	38	28
CTGAAGCCCATTTGCA	alt_5699_new	8	8	10	4	8	8	9	5	7	4
CCCTTTCTCCGTGCCT	alt_5699_new	5	8	6	5	5	1	11	2	10	6
TTCGCGTCACCACGGC	alt_5699_new	16	13	16	10	14	11	14	15	20	9
GAATTGTATTCGCAGC	alt_5699_new	52	42	52	45	37	42	44	56	33	52
TGGTCTCTGTCTGTTT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TATGGGCGTCTGGATT	alt_5699_new	31	41	38	33	35	33	39	30	28	34
GTCATTATCTTCAGTA	alt_5699_new	5	6	5	9	4	6	2	4	4	7
GCCAAGGTTTAACGAT	alt_5699_new	15	23	20	16	19	16	18	15	16	11
TCCGCGCTGAACAGAC	alt_5699_new	1	1	4	0	1	0	2	2	1	3
TCATTATCGGAGTACG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CTCAATGCTGGCGTTA	alt_5699_new	20	25	30	16	20	18	42	19	27	18
GCCCTATGGAGCTCGT	alt_5699_new	91	75	94	96	88	89	91	100	83	92
GCAGGTTTGTGATCCG	alt_5699_new	12	12	13	7	12	5	7	13	12	17
GTACCAGCATACTTGC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
ATTTCCCGCCTAGAGT	alt_5699_new	150	127	174	118	130	111	142	105	148	122
TGCGTGGATCGTTCGG	alt_5699_new	6	10	9	10	6	13	10	6	9	5
TATAAGCTGCAATGAC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GCTTTTCGTCGAGACG	alt_5699_new	1	2	3	3	2	2	1	5	2	2
GGTCACTAAATCTTTT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
ATTCGATTAAACGAAA	alt_5699_new	19	25	36	25	25	21	24	9	27	17
TAGATAACTTCTTCTT	alt_5699_new	6	8	10	5	16	9	9	4	12	12
GAGATACCACTTGGTT	alt_5699_new	23	16	23	15	16	19	18	17	16	19
TCCAGTTGTCTCTCCG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
ATGGCCCGGCGGGCGT	alt_5699_new	10	27	11	19	17	12	15	16	11	11
ATCACGAACAGGCATT	alt_5699_new	19	16	21	13	14	17	14	15	26	21
GTGCAAAGTTCAACGT	alt_5699_new	14	36	22	22	19	10	25	25	33	12
ACCCATACAGGAAGCC	alt_5699_new	21	18	38	27	21	28	25	21	29	23
CAACTTCATGAGGTTC	alt_5699_new	53	59	59	50	68	48	55	60	54	46
GGGTGGCTTTCATAGT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CATAGGTCGTTCACAT	alt_5699_new	4	11	7	6	11	2	23	11	13	4
TTTAGCAAAGTATGCT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
TTAATGCTGGGGACAC	alt_5699_new	4	1	1	5	3	3	5	3	9	3
GAAGTGCGCTTGAGTT	alt_5699_new	48	40	25	40	44	31	44	18	57	30
ATCTCCGGTCGAACGG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CCCTAAGTGCGTGTTA	alt_5699_new	3	7	7	4	6	4	13	6	3	6
GGTTAAGAGTAGGCTA	alt_5699_new	81	129	119	126	104	87	106	77	124	79
TCCGTCTGTGCCTGTC	alt_5699_new	53	86	54	49	80	54	62	53	68	44
CTGATAGTTCGGTTGC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GTAGCTTTAAAACGTG	alt_5699_new	45	68	59	68	67	53	64	67	62	38
CCTGAATATGCGCCAG	alt_5699_new	2	14	4	8	11	4	11	6	10	5
TACCGTCTTCGTTGCT	alt_5699_new	11	15	15	13	17	5	21	8	17	9
AGCGTGTTCACCAAGG	alt_5699_new	17	4	11	12	12	7	9	16	17	14
TCGGCCCCTAGGTCTC	alt_5699_new	27	33	33	22	40	28	27	33	46	33
GCCCACAGTTTTCAAG	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GAAGTCCTGTATGGAC	alt_5699_new	39	48	48	48	44	40	38	34	48	20
CTCGCAATAATTTTTC	alt_5699_new	18	30	28	18	26	16	30	24	21	25
GCGTCGAGCTGTCACC	alt_5699_new	41	49	61	42	47	50	70	31	56	57
TGCCGTAGTCCCTCAT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
CATCCGTGGGCGTCCT	alt_5699_new	3	0	2	3	1	2	6	4	3	0
AATTCCCGCCTAGAGT	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GAATCTGCGGGGCATT	alt_5699_new	142	171	205	140	125	130	177	120	160	108
CCAGGTAACCGCCTCC	alt_5699_new	7	15	9	12	15	3	15	6	24	4
CTGAAACGAGCATTAC	alt_5699_new	0	0	0	0	0	0	0	0	0	0
GGCCACCGCTATCGTT	alt_5699_new	28	37	14	21	57	17	66	15	65	14
CGGAATCACAAGTACC	alt_5699_new	30	40	29	28	34	38	30	38	45	33
GCGACTTAATATAAGA	ref_5699_new	51	54	65	43	61	33	51	49	63	35
TGTCCTCGCTCTTCCC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TCCCTACAAATCTCGG	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GGATCGGCATGTTCTA	alt_5950_new	84	90	112	82	105	93	93	78	107	92
TCGTTATGCTGGTATG	alt_5950_new	11	10	12	6	14	8	20	11	23	7
TTTCCCTCCCCAGCAT	alt_5950_new	26	18	24	26	29	12	21	19	29	14
AAGTAGTGGTACGCAT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TAAAATGCACCATTCA	alt_5950_new	4	12	2	2	8	4	8	10	15	6
GCGTGAGTGTGGGCCC	alt_5950_new	9	18	10	7	20	10	12	18	10	9
AGTTAGGTTCTCGCAC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GATATATCCCTGCCGA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TTACCTGTCTGGATGA	alt_5950_new	17	25	21	11	15	14	22	10	27	10
CCGGGCGTATCCGTAC	alt_5950_new	2	5	5	10	5	5	9	1	10	1
CTGGTATTCGAGGTGG	alt_5950_new	6	12	9	8	14	7	10	4	10	7
GATCCGATCTGCGGTC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CACAACGAGTTATTTC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GAACATTCTATAACAG	alt_5950_new	45	69	71	45	45	41	66	42	60	51
ACTCCACTCTAGATGA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
AGCCGCACCGAATCCC	alt_5950_new	4	26	15	7	34	10	44	17	52	6
GTTGCCTTTGTATTCC	alt_5950_new	3	3	7	3	4	0	3	3	2	3
TGACATCTCTTATACA	alt_5950_new	33	16	39	18	31	24	34	22	25	19
CAAACTCGGTTGGCCA	alt_5950_new	31	28	34	45	37	24	44	30	50	28
CATCGTGTCTACCTCC	alt_5950_new	26	22	29	18	23	19	28	24	28	23
TCCATTCCTGGGCGTT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTGTTTAGGAC	alt_5950_new	24	36	32	11	23	16	28	19	35	19
TCTGTTGATTTTATGG	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GTGAGTCCCAGTCTCA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CATCATTACCGCGACT	alt_5950_new	16	30	27	21	35	27	33	17	34	24
TGGACTGACTTGATCG	alt_5950_new	10	15	12	3	16	14	7	6	10	7
CAAAGTCCTAAGGAGT	alt_5950_new	5	5	7	5	8	11	8	10	9	6
CTGTGGAGCTATGAAA	ref_5950_new	42	57	46	31	70	33	77	31	66	36
CTAAAGTATCAGGGAT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TCATCAGCCGCCTCCA	alt_5950_new	2	5	7	1	24	5	7	5	5	4
TTCCTGCCAATTGTGC	alt_5950_new	5	14	8	3	18	5	17	11	18	3
GACGGGTCGTGGTTGT	alt_5950_new	35	38	31	24	50	28	38	29	39	29
GTTGTCGCTTGCATCA	alt_5950_new	80	98	97	66	95	76	137	51	106	53
GATCTGACGTCCAATT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GTAGCGGAGGATTCGA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CTAGTGGGGTATCACC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GAGCTTTTAGTGTAGC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CAAATATTTCGGCGGT	alt_5950_new	13	16	19	15	21	14	18	9	34	13
ACGATCTGGTGTTTTC	alt_5950_new	70	102	66	62	92	51	85	49	96	50
AAGCAAGTGTTGGTGG	alt_5950_new	3	13	9	5	8	9	8	11	7	5
TATTTCTAGAACAGTT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
ACTCTTACTTCAGGCA	alt_5950_new	41	72	64	42	64	57	61	57	88	51
GGTGTCCGTTAACCCT	alt_5950_new	25	22	23	24	35	31	26	21	26	24
GTGACGTTCCCATTTA	alt_5950_new	24	23	19	10	19	9	25	13	22	19
GTGCTGGTTCAACAGA	alt_5950_new	2	4	1	2	2	4	2	2	4	4
GGTGCTGGCTTAACTC	alt_5950_new	26	31	29	16	39	24	38	23	45	21
CTTATTGTTTTTCTTG	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CTTTAGAAATCAAAGC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TTCATGTCCAACCTTT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CAAAATCCAGTTAATA	alt_5950_new	6	10	9	4	7	9	9	5	5	5
AATGTGGTCATTTTTG	alt_5950_new	54	90	75	79	93	72	105	75	85	84
AATAACGATTACATCC	alt_5950_new	27	15	31	21	26	20	21	21	21	22
TTTCGGACATCCATCG	alt_5950_new	34	46	36	39	47	32	35	30	44	26
TAACACTTATTATAAT	alt_5950_new	17	26	23	22	23	21	39	24	26	9
TTTATCTCGGTGTCTC	alt_5950_new	18	10	7	8	16	11	21	6	23	8
TCCACGTGTTTCTTTG	alt_5950_new	31	23	27	28	33	21	40	19	31	20
ACTCCTTCAATTATGT	ref_5950_new	25	48	43	33	24	27	39	27	54	34
GGCAAGTATATTACCT	alt_5950_new	14	19	25	22	30	24	31	18	29	17
AACTTTAGCTTTATTG	alt_5950_new	1	3	6	4	8	1	7	6	9	4
TAGTACAGTTTCCGCA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
ACTCTAACCGTCCTAG	alt_5950_new	10	29	10	11	31	10	30	6	25	5
ATCGCGCCCTTTCAAA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GTACTTAAAGCGACCT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
AATTCCTCTTCGATGG	alt_5950_new	79	80	89	60	80	64	87	56	81	53
GTCATTTTGGGTTCTA	alt_5950_new	27	46	31	27	63	39	50	30	34	22
GATGCGCCCTTCGTGG	alt_5950_new	42	31	33	29	47	25	33	21	46	26
TCAGGTCTTGTTATGA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CGGATGGGGGTGCTAG	alt_5950_new	12	19	18	21	15	20	19	14	16	12
TGTCAGCTCGGGTCAT	alt_5950_new	22	32	47	41	21	26	42	24	24	25
TCGCTTGGCTTGTGAC	alt_5950_new	13	20	19	24	23	25	21	26	38	21
CTCTTGTTAGTAACCT	alt_5950_new	8	13	9	10	14	9	16	11	11	5
TGGCCAGTTCCTCGAT	alt_5950_new	24	34	34	20	32	26	34	14	36	16
CAATTTCCACCGTTTA	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CTACAATAGATAAAAC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CCAACATCTCTCCGTT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CCATACTCTTTTTTTG	alt_5950_new	4	10	11	11	13	6	8	8	10	8
CGGTACGTCCTGCCCT	alt_5950_new	49	77	58	43	87	44	76	33	80	47
GTACGAATGTTTTTTA	alt_5950_new	12	11	11	11	20	15	8	11	18	8
TTTTATTTGGTTCATT	alt_5950_new	16	21	21	14	28	16	20	12	22	8
TCGTCTCCGAATTTAA	alt_5950_new	3	0	1	1	0	1	2	0	5	0
TGGGACTGGAGTCTAA	alt_5950_new	13	22	16	14	21	24	27	14	25	6
GGACTTTGCGGGGAAA	alt_5950_new	12	18	14	13	12	18	12	12	19	14
CGTGTTACCTGAGTTT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TACTGGCTAATTACTA	alt_5950_new	25	17	19	7	16	17	15	18	20	11
ACCTGATAAGGGGTTC	alt_5950_new	32	37	41	23	34	37	21	34	37	29
TAGAGGTCTTCGGCTG	alt_5950_new	32	56	36	42	61	42	41	37	49	43
TTCTAGTGCCTGGTAT	alt_5950_new	2	4	6	2	8	2	5	1	2	0
TTTCGATGTTCGTCCC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GGCGGGTTTACACACG	alt_5950_new	41	58	64	47	71	41	71	30	63	44
TGCTGCATACGCCTCG	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CCTTATTACCGATTTG	alt_5950_new	0	0	0	0	0	0	0	0	0	0
GCGGTTGTAGTCTCGG	alt_5950_new	11	10	23	19	15	11	16	11	12	12
ATCGTTGTGTAACAAT	alt_5950_new	9	18	16	8	13	10	15	19	27	5
CAAGCCGGTTCCCTTC	alt_5950_new	2	11	8	4	7	4	11	1	12	2
CAACCGCAGTCCCTTT	alt_5950_new	47	94	56	55	95	41	88	53	94	37
GGAGTTGTGACCCATA	alt_5950_new	3	6	4	0	3	1	1	4	3	1
TGCCCTTAAGTCGTTT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
ATCCAAGACCACTCAG	alt_5950_new	0	0	0	0	0	0	0	0	0	0
ACGGACAACTATGTTC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
CCGCCACCGTGCTCTA	alt_5950_new	6	22	10	11	19	11	24	17	24	10
TTACGTTATAATTTGC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TAAGAAACCGTGTTTG	alt_5950_new	20	31	21	20	24	15	28	20	33	12
CGCGTGTGTGAACCCT	alt_5950_new	18	26	33	31	28	8	36	9	31	21
CGCGCGCTGAGCTCCG	alt_5950_new	18	16	16	11	28	13	26	10	26	17
GTAATCAGGACTTCTT	alt_5950_new	6	11	3	5	8	5	10	9	8	3
TGGGAGGATCTGAAGG	alt_5950_new	134	154	135	136	161	101	164	123	160	120
TTGTTCCCTAAATCCG	alt_5950_new	13	19	12	11	11	11	25	12	26	10
TGTCGGCCTATGCGAT	alt_5950_new	93	123	118	104	146	86	135	106	164	61
AATCTAGATGTTACCC	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TTAGAACTGCATTTTT	alt_5950_new	0	0	0	0	0	0	0	0	0	0
TATCACTAAACGTTGC	alt_5950_new	17	23	13	7	13	7	15	9	11	9
GCGCCTTTCGGGGTGT	alt_5950_new	2	3	1	2	5	0	3	2	2	0
TTGCTAGGGCAGTGGT	alt_5950_new	22	34	23	25	37	21	37	11	34	19
ATCGGCGTAGTCGTCT	alt_5950_new	21	36	16	33	41	22	36	31	46	19
ACCCTGCTTTAAGAAT	alt_5950_new	3	4	7	7	9	2	6	4	3	7
GCGATACCTAAGTTGG	alt_5950_new	3	8	10	9	16	2	9	7	4	1
GTTTCTTAGCTCAGAA	ref_6021_new	43	29	26	37	33	32	36	30	25	23
ACGGCTTCGACATACT	ref_6021_new	73	69	80	83	72	55	64	62	66	63
TGAGGGGCCCTTAGTC	ref_6021_new	33	19	23	26	19	14	16	22	26	16
GATTTTATGGGAAGCT	ref_6021_new	31	26	30	29	27	27	34	25	20	31
TACAAGGTAATCCAAG	ref_6021_new	18	20	21	19	21	24	12	15	17	17
ACGTGCAAGGTAACTA	ref_6021_new	10	14	11	7	11	13	4	8	14	3
TGGAGGGGAAAAGGCC	ref_6021_new	11	26	25	18	25	17	18	24	19	19
GTGAGTTGGCCTTCTT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TATCTTGGATTTGTTT	ref_6021_new	30	32	43	27	30	34	21	53	32	40
GCCTACCGGTCTTGCA	ref_6021_new	42	74	45	48	83	36	99	36	89	32
GGACATCGTATCCTCA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
AAGGAGAAGAATTCTG	ref_6021_new	21	22	16	20	12	13	13	12	10	12
ATTATCAGCGTTGACC	ref_6021_new	37	41	63	46	39	37	47	43	57	36
TCATACTATAAAGCGT	ref_6021_new	28	25	29	34	33	30	31	33	28	39
TGTTCGCTGCGTTAAC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
AGTCGGTACATTCACT	ref_6021_new	27	19	30	27	34	32	27	33	34	20
CGGATAGATTGATGAA	ref_6021_new	22	8	18	13	8	11	13	15	24	15
ATATGAGACTCCGTGC	ref_6021_new	16	7	13	5	10	6	6	10	9	11
CTTTAAGTTATTGCTT	ref_6021_new	39	41	39	33	49	38	52	37	47	25
TCCGTACCGGTCATGA	ref_6021_new	30	37	33	31	26	33	34	32	41	26
GGTCACCCCAGCCCTC	ref_6021_new	1	0	2	0	2	1	0	2	4	0
CTTCGCGGGGTCGTTG	ref_6021_new	62	65	74	56	55	52	67	61	69	49
GAAACTGGTCCGCGTT	ref_6021_new	35	19	35	37	26	34	38	34	41	36
GTCATATTTTTGTACT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GTCGTCGGATACTTTC	ref_6021_new	16	10	21	21	13	11	11	16	8	9
CCTAAGGAGTTGTTTA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
AAACCGTCGCAAGATG	ref_6021_new	45	32	51	22	45	28	36	31	41	29
CTTATAATCCGGCGTC	ref_6021_new	10	3	8	8	8	6	4	7	6	6
GTCAAACAGGTGCAAG	ref_6021_new	0	0	0	0	0	0	0	0	0	0
CGTTCCCGCGTAGCCT	ref_6021_new	66	56	80	63	54	48	55	44	88	67
CATCCGTTTTCGGCAA	ref_6021_new	10	8	7	11	6	4	7	10	7	9
ACAGTCGGTTAGCGTT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GCTTATAATCAAAGTT	ref_6021_new	20	11	24	17	19	24	20	32	27	17
CTCGGCTACTCTCCAT	ref_6021_new	62	67	59	63	70	46	77	60	65	35
GGCCCGTTCGCGGCTA	ref_6021_new	2	5	1	1	1	2	3	1	2	3
GAAGAGTTTCCAATAT	ref_6021_new	49	48	63	49	59	44	46	40	51	41
GCTCAACGTTGTACGC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GCACCGGAAACCCACT	ref_6021_new	30	25	41	23	22	30	22	24	29	25
AGGCGTGGCTGTCCCC	ref_6021_new	67	57	81	80	58	50	74	63	62	55
GCGTAGCCCAAATCCC	ref_6021_new	9	29	8	9	21	5	19	10	27	7
TTCTCTGGGGGATTGC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
CAGGGCTGTCGTAGTT	ref_6021_new	23	29	23	20	21	24	26	24	22	15
TCATATATTTTGAACG	ref_6021_new	14	20	22	13	18	16	20	14	10	10
CTCTGCTTTTGTTCGA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TTCGTGACAGTTGTAA	ref_6021_new	21	33	44	16	27	31	30	28	35	29
TGCCTATAGGCTCAGT	ref_6021_new	20	18	13	18	20	20	20	15	19	19
TAAAGTGCTCGTACCC	ref_6021_new	35	37	31	32	45	34	31	29	36	38
TGAGCTTCGTGTAAAC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
AAAATAATATGCGGAG	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TTAGTCTGACGGCGTT	ref_6021_new	75	69	99	75	71	82	79	75	75	65
ATTTAACGGTCTGCCG	ref_6021_new	14	14	26	14	12	12	9	14	9	10
AGTGTATGCCCAAGAA	ref_6021_new	6	4	8	3	5	2	13	6	5	5
GTACACTTGCGGAGTC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
AATCCGTTTTCGGCAA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GTATATCACTTACCCT	ref_6021_new	20	60	33	28	56	26	53	14	58	20
AAGATCGCGGATTACG	ref_6021_new	5	1	8	8	5	5	7	4	3	4
CGGATTTTGTAGCCTC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TTGGTTTGTCCGGTCG	ref_6021_new	60	49	77	55	54	61	59	45	67	49
CGTCCCTATTATCGTT	ref_6021_new	30	26	41	23	30	26	31	38	31	35
GGACGTGTCCTGCCGT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
ATGTGGGCTCTGCAGG	ref_6021_new	13	15	18	16	11	8	22	10	20	7
TGAACGTTCCATTGGG	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GATTCATATTAGGTGA	ref_6021_new	28	26	48	29	26	29	33	31	28	34
GGTGGTTCGTGGCAGC	ref_6021_new	43	30	32	32	15	31	23	27	49	34
TTGTTTGATTCCAGCT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TCTATGCCTTCTTAAG	ref_6021_new	5	3	7	10	11	13	8	11	7	7
AGTCTTGCACGCCAAT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TATCTCACCACTAATT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TCGCTAGAATCAAAAC	ref_6021_new	13	16	17	25	9	19	17	23	17	20
TGGCTTAAGATAGTAT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TCAAGGTTTAGCCGTT	ref_6021_new	97	96	86	95	92	90	97	118	93	96
GTCCAAGCCATACCAA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
CCTTAGGACTCCCACT	ref_6021_new	35	23	32	26	47	38	51	27	42	23
GTCACATTTACATCGA	ref_6021_new	35	28	48	43	19	27	29	33	27	27
CTGTAAAGACCTTGCT	ref_6021_new	25	33	42	34	25	32	39	25	33	31
GCTAATGTTCCGCCTA	ref_6021_new	8	8	13	16	7	5	7	10	9	4
CTGTTACATTCACCGC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GTATGTGGAGATCTCA	ref_6021_new	23	27	24	10	18	25	22	7	37	14
CCTCAGGTCATCCGTC	ref_6021_new	120	117	143	141	121	106	137	112	146	113
GTTGCGCGGGGATATT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
ATGAGTGTAGTATGTA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TGGGGGTTGGAACTAA	ref_6021_new	88	88	100	78	108	67	113	69	106	60
ACTAACGACGTATCCC	ref_6021_new	16	15	15	12	7	12	13	14	15	9
TCTCGCTCCTGCAGCG	ref_6021_new	30	69	48	36	68	40	86	20	73	45
TGTTGGTCCCCGCCGC	ref_6021_new	19	15	24	21	13	19	24	19	25	11
GCACAATCCTACGTAC	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GTAGTATGCTTCTCAC	ref_6021_new	29	27	27	37	24	33	27	25	29	23
TAGACGGAGACTTATG	ref_6021_new	0	0	0	0	0	0	0	0	0	0
CTAAGCAGCTATCGCA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TATCGCTTGACGTCTC	ref_6021_new	13	29	34	23	29	36	20	29	19	11
TGGAGTCCCATCGTTC	ref_6021_new	55	77	70	68	77	63	57	49	67	53
ATCAATGGTCGTAATT	ref_6021_new	21	16	15	17	17	16	20	8	21	7
AATTTTTCGAGTTCCT	ref_6021_new	11	17	20	20	19	12	15	19	20	17
TCCAAGTCGGTTGTGC	ref_6021_new	0	7	1	4	18	2	8	1	9	2
TGGTGAATCAAATCTC	ref_6021_new	44	52	49	46	58	33	57	46	44	40
TTTACTTTCCGAACCG	ref_6021_new	138	135	158	133	155	153	128	153	147	114
GCCTGTCAATCAAGTG	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TAGTGTGTTTTTAGAA	ref_6021_new	52	68	61	75	64	40	60	45	79	55
CTCCGGCCACCAATTT	ref_6021_new	3	18	5	8	4	4	13	7	12	4
TCGCGGTAAATTCTGG	ref_6021_new	4	9	4	4	7	9	5	7	13	4
AATGGAACACGGATGG	ref_6021_new	30	20	37	33	26	45	27	39	35	33
GATTATATTAGTTCTA	ref_6021_new	4	5	8	2	6	4	3	2	1	4
CTCTGCGCCTACGTTG	ref_6021_new	0	0	0	0	0	0	0	0	0	0
AGCGATGGATTGTATG	ref_6021_new	127	109	148	110	104	79	121	104	98	99
TCTTGTTTCGTCACTT	ref_6021_new	21	19	22	23	15	14	23	11	24	12
AGGCTCTGTTGTTGCT	ref_6021_new	114	95	135	110	103	110	116	86	107	94
TTGTAATAACCTTATT	ref_6021_new	58	31	46	42	35	40	26	41	35	43
CGCCAGCATCAACCCC	ref_6021_new	41	51	62	75	62	56	55	39	63	35
CATTACATGATACAGT	ref_6021_new	65	91	100	75	113	73	97	62	88	50
GCTGTCTCTCTCTCAT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
GCACCGCTCCGATCCA	ref_6021_new	0	0	0	0	0	0	0	0	0	0
TTACGTCTATGAGCAA	ref_6021_new	0	2	3	0	0	0	0	0	0	0
GAACTAATTCGGAGCT	ref_6021_new	14	11	13	11	15	9	5	8	15	10
CATATTGACGTTGTTG	ref_6021_new	1	2	2	0	3	1	2	4	1	1
CTCTTTCACGCAATTT	ref_6021_new	0	0	0	0	0	0	0	0	0	0
CTCTCATCTATGTTGG	ref_6021_new	19	17	18	12	8	10	9	6	11	8
TTATTTGCCCAAAAAA	ref_4201_upstream	10	30	13	12	35	27	24	16	29	13
CGCCCTCCGTTGGCCT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTGTGATTTGCCG	ref_4201_upstream	222	151	266	147	153	208	190	190	203	206
TGTCCGTTGTGGTTCG	ref_4201_upstream	80	56	101	56	61	57	59	39	59	76
TCACGACTTGCGCTAT	ref_4201_upstream	42	38	80	55	41	64	45	36	37	61
AGGAGGTACGTTAAGC	ref_4201_upstream	61	42	67	52	39	61	36	58	35	61
TATACGGTGTAGGTTC	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTGATCGTGTCTT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTCACTTTCCGAT	ref_4201_upstream	16	19	20	21	15	23	18	24	23	16
CTTTTTCCGCCTGAAT	ref_4201_upstream	13	14	28	30	16	13	24	20	19	21
CTTTTTTAATGCTATA	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCTCAGACTCTT	ref_4201_upstream	123	79	135	81	73	89	91	96	84	102
TATTTGCAATCTTGAC	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCACCTTTATCGG	ref_4201_upstream	193	215	222	153	259	161	241	156	264	141
TAACATGACTTTATAG	ref_4201_upstream	44	39	52	29	31	45	34	40	33	31
GCCTTCAATATAGATC	ref_4201_upstream	34	14	30	24	27	21	21	25	14	28
TCTCTAAGGCTTGCTC	ref_4201_upstream	39	24	34	16	22	29	29	23	38	30
TGTGGTACAGGGGGGA	ref_4201_upstream	10	5	14	3	5	11	4	3	6	10
ACCTACTGAGTGCGGT	ref_4201_upstream	18	9	18	9	10	14	9	14	11	14
CGGATCTGGCTCCTTA	ref_4201_upstream	2	21	3	2	11	3	17	4	17	4
AACGAACTTCTACCCG	ref_4201_upstream	51	28	67	51	44	44	26	54	34	52
CGTGTGGTACGCTGCC	ref_4201_upstream	73	30	73	49	46	64	61	57	62	80
CCGTACTTGGGTAATC	ref_4201_upstream	10	14	4	7	13	3	10	6	13	9
CGTCGTGACCAATGCC	ref_4201_upstream	45	75	30	24	54	19	61	16	77	19
TGGGTAAATTGCGACT	ref_4201_upstream	54	32	64	45	34	62	28	52	43	33
GGACATTTGTTTAATT	ref_4201_upstream	30	15	27	20	14	24	20	21	22	21
TACATCTCTTTGTAGT	ref_4201_upstream	45	50	66	41	53	44	39	41	27	55
ACTCAAACATCTGCCA	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
AGATGTCGTCTATCTG	ref_4201_upstream	49	44	60	49	37	52	43	41	34	47
TCGAAATAGCATATTA	ref_4201_upstream	11	10	13	7	13	8	12	11	11	14
CTGATCAAGGGTTCGT	ref_4201_upstream	87	78	123	79	75	89	64	96	67	84
GGCTTGCCTGGACCTC	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTTAACTTACAA	ref_4201_upstream	24	31	35	29	22	33	22	23	29	26
CATTTACGTGGCCTCA	ref_4201_upstream	62	44	86	50	38	59	36	34	53	57
TGGGAAGGATTTTACC	ref_4201_upstream	47	35	38	29	32	36	25	17	44	31
GAAGTAGCCCGGCTCC	ref_4201_upstream	57	46	65	48	58	54	60	56	42	42
TAGGTGTTGTCGTTTC	ref_4201_upstream	53	39	52	47	41	29	40	36	32	43
TCGGTCTCGATCCATG	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGGACGTACTGA	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTAGCATAATCTG	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAATTGCGGGACA	ref_4201_upstream	18	7	27	8	16	18	14	16	13	9
TCAGCTATTTCACGGT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCCCTACAGTGTC	ref_4201_upstream	43	42	52	35	42	46	56	40	63	37
CTTCACATATCCAGGT	ref_4201_upstream	28	15	33	20	17	32	20	20	18	24
TACAGGCAGCTTTTCC	ref_4201_upstream	35	16	41	21	19	27	19	19	28	21
GTTCTGAGCCGTAATT	ref_4201_upstream	11	11	15	10	9	17	8	12	9	10
GTCGCTGCTCGGTACG	ref_4201_upstream	6	6	14	11	5	10	5	5	10	8
ATGTTTGACTTGCTGC	ref_4201_upstream	19	15	17	18	15	12	13	10	11	12
ACCCTGGCGACCGCCG	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
AAACTATTAGAACTAC	ref_4201_upstream	16	8	15	10	13	11	11	15	13	12
CCTGGGGGGAAAGATA	ref_4201_upstream	6	6	4	2	5	5	2	4	3	5
ATTTAGTCAAGTACGG	ref_4201_upstream	196	113	188	165	145	172	156	187	142	165
CAGGTTTAGGAGGGCT	ref_4201_upstream	15	15	26	10	10	17	15	13	11	21
GAGTGGGTGGGCACTT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTAGCCGGGATCT	ref_4201_upstream	25	26	25	33	26	24	19	40	19	23
CGCTATCTCACTAATC	ref_4201_upstream	70	55	66	70	58	64	38	73	61	82
CCTTTTAGATATGTAG	ref_4201_upstream	70	49	85	41	56	74	58	56	66	78
TTAAAACTCATTAAAA	ref_4201_upstream	62	76	73	41	73	42	57	42	73	47
TGTCAGGCTTGGAGCG	ref_4201_upstream	38	35	45	32	39	25	36	22	36	27
GGCGCACTACATCGGC	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
CGATATGGCCGCAACT	ref_4201_upstream	15	4	17	12	5	9	3	14	8	14
CCTGCTCTTCACTAAG	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAACTGTTGCCTT	ref_4201_upstream	58	38	40	41	25	44	39	34	35	35
CTGCCATCGCTGATAG	ref_4201_upstream	70	80	91	68	63	85	66	74	80	76
GGCGTATATTATTCAT	ref_4201_upstream	106	48	98	91	55	80	76	77	58	67
GCGTGAGATCCTATTA	ref_4201_upstream	16	14	35	17	16	22	10	22	13	27
GTCTGTTGAAGCGTGT	ref_4201_upstream	164	110	192	111	97	160	114	118	112	151
GTTACGCAAAAATTCC	ref_4201_upstream	21	39	28	38	50	32	37	25	37	22
ATTCAGAGTCAACGCC	ref_4201_upstream	110	79	152	76	87	119	78	72	69	108
GCTTCTTTGGTACTTA	ref_4201_upstream	298	168	353	246	207	268	229	276	245	262
TGCCTGCATATGCCTC	ref_4201_upstream	111	87	123	100	77	94	89	89	104	94
GGCGAAGGAAAGATGT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTCTTGTCTAGC	ref_4201_upstream	34	30	56	34	30	35	19	21	26	25
CACTTAGGTGACCTTC	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
GATTAGTGGCGCAACC	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCTCTCCCTGTTT	ref_4201_upstream	11	15	9	12	20	11	20	5	22	13
ATGGGTATGCAGCCAG	ref_4201_upstream	34	31	42	13	20	28	40	21	31	30
TAAAGTGAATTGACAT	ref_4201_upstream	29	17	40	13	13	29	21	16	19	33
GTCTTCGCTAAGAGAT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCAACCGCGTCTT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTTATGCCGAATT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCGTTTCTCCATT	ref_4201_upstream	0	0	0	0	0	0	0	0	0	0
TTTGACTTAATAACCA	ref_4201_upstream	6	4	10	4	7	10	8	10	6	6
AGCGGTTCCTCCCCCC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
AGCACACAAATAACGG	alt_5125_fdr	14	6	15	14	6	7	14	13	14	6
GCTTTATAATTGATGT	alt_5125_fdr	9	2	7	3	5	5	1	8	2	2
TTCGGTAAGTTTTACT	alt_5125_fdr	20	17	19	22	13	18	17	19	5	15
GGAGAATGACCAGGCG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACAGACCTCAGTGGAC	alt_5125_fdr	0	1	1	2	3	3	0	2	0	1
AGCGTTTTGTCCATTT	alt_5125_fdr	9	5	11	12	10	11	9	11	8	13
TGGTCTCTGGTCCCCG	alt_5125_fdr	14	32	21	13	39	11	25	17	37	11
AGAAGAATAGTTCCTG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAGTCGAATTTCC	alt_5125_fdr	19	19	31	17	37	21	21	26	10	15
CTATTGCGATATGGTA	alt_5125_fdr	26	22	37	29	31	28	29	33	29	25
CCTTGTCCCTTCCTGT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TAGACAAGGAATTGTT	alt_5125_fdr	102	59	114	103	55	96	80	90	70	77
TACTTCTGTAGCGACA	alt_5125_fdr	113	91	119	114	78	73	84	73	105	81
TCAGAGACTAATCTTT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CAGCAATGTGGCGTTT	alt_5125_fdr	42	41	59	49	39	53	44	30	43	46
TTGTCATATTCTAGGA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GGAATTTTTGCTTAAG	alt_5125_fdr	22	16	39	26	17	24	16	33	29	24
TTGTAATCGTCTTCAG	alt_5125_fdr	49	22	24	24	21	19	22	28	22	38
TTGATGGTTGGTACCC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GATTTGCTTCTTACAT	alt_5125_fdr	98	57	94	80	60	83	52	70	55	65
TGATACTCACTGCTCC	alt_5125_fdr	29	50	39	40	56	27	37	21	64	25
CCATCCCGTATGGGGC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTAAGGTGAGACT	alt_5125_fdr	210	170	269	198	177	192	177	187	160	157
ACTAGCTTGTCTCAAG	alt_5125_fdr	2	12	7	2	8	2	5	6	8	5
GATGCGTACTTGGCAC	alt_5125_fdr	29	19	19	32	31	22	30	27	25	23
GTAGCTGTTACAGTAG	alt_5125_fdr	245	210	275	269	172	236	185	211	228	179
TCCAGCGTTCCTATAG	alt_5125_fdr	20	11	26	28	14	14	17	28	27	20
CGCGTGGGACGATTTT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CTGGACGTTCGAATAG	alt_5125_fdr	6	8	14	6	4	7	6	4	7	13
GTATGCCTGCAGAAGA	alt_5125_fdr	33	35	65	53	27	45	30	35	36	37
AGTCCCTATCAGTGGA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCAGCTAGTCATG	alt_5125_fdr	6	6	9	4	1	5	5	12	8	6
ATTTGTGGCTAAGACC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTTTCTAGTGAGG	alt_5125_fdr	15	14	24	16	6	12	12	13	17	7
GAGATAGCTTTGCCTT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGAAGCGACAGCA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGATTTAGCCCAG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
AACTTCCGTTGACGTG	alt_5125_fdr	53	42	63	67	46	50	49	56	41	42
CATTTAGGATAGTTTG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTGTTTTCGCCTT	alt_5125_fdr	25	13	44	34	14	23	14	27	26	10
GAGGAGACAAGGCATG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGTTACGGGTTCTTTG	alt_5125_fdr	88	70	101	75	73	98	69	82	82	68
GTGAGTCGCAATAGGC	alt_5125_fdr	5	1	3	2	3	1	1	2	6	1
CACACTTTTTCACAGT	alt_5125_fdr	20	19	13	19	9	19	13	25	19	19
CACTGAAGCAATGGTA	alt_5125_fdr	47	46	76	59	50	42	40	53	50	42
ATATATGTCTGTTGTG	alt_5125_fdr	19	14	26	27	13	20	15	20	24	20
TGGAATCCGACTGGTA	alt_5125_fdr	20	25	44	31	18	23	28	19	30	37
GAATACGCTAAGGCAC	alt_5125_fdr	16	9	22	12	6	14	6	9	12	12
GATTCACCGGCTTACG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CACACACAGAAATATG	alt_5125_fdr	40	35	56	67	44	37	59	42	39	36
TTCCATGGCATTATAG	alt_5125_fdr	162	122	191	159	148	149	142	158	156	193
GTTAAATCTCTTCTAT	alt_5125_fdr	53	33	63	69	36	66	48	58	55	28
GCTTTAGCTATCGTCT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGATTATCTTTAA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTGTTTTTAGTTG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTCTCGGACAAGA	alt_5125_fdr	79	64	100	70	62	86	57	63	70	70
TTCTTATGCGTGCGCA	alt_5125_fdr	125	103	148	101	85	99	106	93	109	96
TAACAACTTAGGGACT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TATAGCGGGTTCGACT	alt_5125_fdr	1	6	5	2	2	4	3	2	5	5
ATAAAAACAATAGAGT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
AGGTATGGTTCTTTAG	alt_5125_fdr	32	19	56	40	22	43	23	35	43	26
AGGCTTGGATTTGCTA	alt_5125_fdr	37	32	33	31	34	47	35	24	69	33
TTCCACGTCCAGCTTA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGGGCGTTTCTGC	alt_5125_fdr	67	59	85	80	55	74	74	59	60	71
TTTATCGTTTTGGCAC	alt_5125_fdr	87	69	108	79	65	81	54	80	84	66
TTGATCGCCAGCACCT	alt_5125_fdr	13	3	10	11	2	7	4	5	3	4
CGTCAACCAAAGCGCC	alt_5125_fdr	41	30	53	34	32	40	15	38	22	41
TCGAAGGGGGTCTTAG	alt_5125_fdr	43	48	64	47	31	30	29	37	24	41
TGTCTCTGATCTCCGC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GTCTGTCAGTTGATGA	alt_5125_fdr	7	6	12	5	8	9	12	10	9	4
TAAGTCACTTGGCACG	alt_5125_fdr	29	15	40	25	21	21	29	39	20	23
TTTTGGGGAGATGTGT	alt_5125_fdr	242	181	268	253	219	206	159	241	191	192
CTAGACACAGCCCGGA	alt_5125_fdr	18	19	29	17	24	20	20	22	27	22
CGTATCTTCTTATTGC	alt_5125_fdr	39	25	28	21	27	27	24	41	17	34
GCTTTTTGATACACCT	alt_5125_fdr	15	10	13	11	2	7	9	9	5	7
TGTTTGCTAACTCAGC	alt_5125_fdr	126	108	193	129	115	144	101	140	135	146
CACTGCCATATTTAAA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGTATAATTTCATCTA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GATGAGACCGTACTTT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GTGGATCCCTCCTCCT	alt_5125_fdr	57	41	57	46	42	72	56	40	41	48
TGCATCTCTGCGGAGC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CTTATCTAGAAACAGT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
ACACGAAGGCGCCATG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTAAATTTGCTCACTA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTCGAACGAAGCT	alt_5125_fdr	71	53	87	73	68	74	42	73	51	64
CGACCCTACATAACTT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGACGCCTCTAAC	alt_5125_fdr	47	37	74	46	32	42	35	49	24	28
CATTACGTCTCATTCC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGGTTGGGCTTC	alt_5125_fdr	26	17	27	23	19	17	16	18	13	20
ATTGCTATAGATGTCT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTATAAGTTTGGC	alt_5125_fdr	1	0	0	0	1	1	1	0	0	0
ATACCGGTATTAGCGC	alt_5125_fdr	21	22	22	19	20	16	21	11	15	13
GTGTTATCCGGGACCC	alt_5125_fdr	68	41	79	80	61	81	49	70	55	61
TGGAATCAGGTGTAAC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGCTAGCGGTGGG	alt_5125_fdr	15	12	16	12	9	16	8	9	15	10
TATTTCCCGAGCAACA	alt_5125_fdr	14	9	24	14	12	17	12	19	12	19
TCGAATATACAGATAA	alt_5125_fdr	139	90	167	125	101	136	90	130	95	107
ATAGTCATCATCTGGC	alt_5125_fdr	158	103	198	142	100	141	102	173	88	136
TACGTACGTTCGGATC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAGGATTGCACGA	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTATAGTCTTCTATTA	alt_5125_fdr	88	69	109	93	68	97	62	76	81	63
CGGTTCCACATCTTGC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
AACCTCGGATTTTGCC	alt_5125_fdr	8	13	15	17	12	2	17	17	8	10
TTATGTCTCTGGATTC	alt_5125_fdr	26	19	41	34	29	39	30	32	30	30
CGAATTTTCGTCTTAC	alt_5125_fdr	57	38	69	61	65	61	56	47	39	45
ATATGATAAACACCCC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTTGAGAGCCAGT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TACTCACGGTAAATCC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
ATCATATTTTGCTGAA	alt_5125_fdr	26	25	32	26	16	31	26	33	33	19
ACGTCAGCTCCACCGT	alt_5125_fdr	67	41	63	63	52	57	52	46	60	46
GTAGCGGACCGATGAT	alt_5125_fdr	8	6	10	9	7	9	5	3	4	9
CGTAGCCCGGCACCGT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAAGTGTTGGTGG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
CGTACTTCTCCTTAAC	alt_5125_fdr	37	31	54	59	38	37	40	22	46	42
ACTGTCATACAACGTT	alt_5125_fdr	75	57	77	55	49	72	58	52	55	69
GCCTGTTAGCAACGGG	alt_5125_fdr	25	11	26	20	25	18	18	32	17	16
CAATGATCTCCGGGCT	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGTTAGAATAGGG	alt_5125_fdr	20	12	16	19	17	8	19	21	15	14
GACCCTTGTTCCTCCC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCAGTAGTCCCGA	alt_5125_fdr	55	39	59	45	53	54	36	55	45	55
GACAGATCTAAGCTAG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
GTGCAATAAGCTGCAC	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATCTGCTCCGGG	alt_5125_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTAAGGGCAATTA	alt_5125_fdr	6	12	15	7	11	12	11	8	10	11
TGTTCTGATATCTGGA	alt_5672_new	79	64	82	54	78	56	84	82	78	50
CGTTGGTTCCCAGGAA	alt_5672_new	23	37	25	24	42	22	50	24	41	17
AGTTTATTGTCGGCAT	alt_5672_new	12	17	19	24	15	14	14	18	15	20
GCGACGTTCTTGTCTT	alt_5672_new	10	16	15	23	16	12	12	12	13	21
CCAGTGTCGAATTTGG	alt_5672_new	31	25	24	22	38	26	36	23	35	32
TAAGTACTACTGCTGG	alt_5672_new	57	75	78	67	77	72	67	81	53	60
TGGATCGCTTGAACTA	alt_5672_new	83	84	92	89	64	78	93	68	88	67
TTAACAATTTTCCGAG	alt_5672_new	7	6	14	15	8	9	17	3	15	11
AATGCGTAACCGCCAT	alt_5672_new	16	14	30	23	11	18	12	15	12	11
ATATCAGGAATCCAAG	alt_5672_new	42	20	26	33	18	25	29	36	24	15
TTTCTCGTATGGCTCA	alt_5672_new	4	4	7	9	2	7	5	5	3	3
TCCTAACATACCCCTT	alt_5672_new	12	24	10	18	23	8	24	9	24	10
TGATTCTTCTTGACCC	alt_5672_new	17	7	21	10	7	18	19	13	10	9
GCTCGATGTGCTGTCA	alt_5672_new	54	52	46	46	39	34	54	36	58	41
AACGTTCCTTGCTGTA	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GACCTTTTAAAGTCTG	alt_5672_new	37	34	32	39	33	39	43	25	53	23
CTGCCCTATAAACTAC	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GGTAATCGCTGTTTAG	alt_5672_new	2	2	2	1	1	3	9	2	5	4
TCGTATCATGGATTGA	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GTGGCTAGACGGGTTC	alt_5672_new	30	37	40	27	29	19	38	30	31	19
TATTAATCTTTGTCAT	alt_5672_new	112	100	130	94	100	101	94	123	107	80
TTACTTGTACGGTTCC	alt_5672_new	0	0	0	0	0	0	0	0	0	0
ATATTGCGGATTTTAG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GCTTGAAACGAGTCTC	alt_5672_new	64	43	57	29	39	42	36	31	41	40
AGCCGCATTGGCCGTT	alt_5672_new	29	55	39	37	33	22	37	22	40	24
GGATCCCGTCCGTCGT	alt_5672_new	0	0	0	0	0	0	0	0	0	0
CTTTTCAGGGATGTAT	alt_5672_new	13	38	37	25	36	18	26	27	35	23
TCCACCTGTAGGTAGT	alt_5672_new	25	20	27	21	25	8	26	18	21	24
TGGGAAGAATCCATGT	alt_5672_new	70	46	75	44	60	56	68	56	80	54
CGCGAGATCCCGCTTA	alt_5672_new	13	4	6	8	15	9	9	14	6	10
AACTATCGCAAAGTGT	alt_5672_new	24	24	26	32	27	23	37	27	28	13
AAAAAATCAGCCCGAC	alt_5672_new	24	22	29	29	20	36	16	29	18	16
GCTATTACTCTTTACA	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GTTCCGCCAGGCGACT	alt_5672_new	0	0	0	0	0	0	0	0	0	0
TTATTAGCTCGATGTC	alt_5672_new	52	53	61	57	48	45	47	47	48	35
GAGACACTAGCATCTG	alt_5672_new	37	27	18	24	21	27	24	30	20	23
CTCCTATACGACCTGA	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GTGACTCCGTATTCTC	alt_5672_new	38	35	34	50	34	36	26	29	37	29
CTCGGTTGACCGCGTG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
CGTCAGCTTTTGATGG	alt_5672_new	88	82	101	109	70	68	98	79	90	67
CTCCCGGTACTGCGCG	alt_5672_new	22	27	25	19	37	13	26	19	34	12
AACTTCCCCCAATGTA	alt_5672_new	9	15	11	7	10	7	9	13	12	11
TAGTATAACAGTTTGT	alt_5672_new	69	72	86	61	77	62	72	51	69	61
GTCAACAGCCTCTCAA	alt_5672_new	28	26	23	26	22	20	40	23	43	18
TCTTCCAATTTCTCGA	alt_5672_new	17	8	24	8	11	6	9	11	9	7
TGCTACGCTTTGCTGA	alt_5672_new	18	22	29	29	40	13	19	22	30	25
TTTGAGGGGAGGTTCC	alt_5672_new	81	49	70	68	108	30	50	85	33	72
TATAGAGCACCTGTTT	alt_5672_new	28	25	35	41	28	25	25	19	32	34
TATGTCGAAATTGACG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
CTTTTCGATGATCGGT	alt_5672_new	32	32	34	31	44	30	18	23	29	22
TCCAACTGTATTTACT	alt_5672_new	23	49	31	40	45	41	47	25	31	34
GCTCTTGTTATTGCGT	alt_5672_new	25	23	25	23	19	27	32	33	24	19
TGAGTTCGTTAGAGTC	alt_5672_new	7	16	13	9	19	6	20	6	22	9
GTCCGGCCTTAATAGC	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GCATTTTCTGTACTAA	alt_5672_new	8	5	8	5	3	7	12	4	7	6
TTTGTGCTGCGAGCAG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
TCTTTGGGATCATCGC	alt_5672_new	23	19	25	18	25	13	25	17	34	16
GCCCGGCAACAATGCG	alt_5672_new	22	18	14	12	6	12	13	15	15	11
TTGCATCCTCATGCAG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
TCGAAGCGTTAGCCAA	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GGGCAGTGGTAAAAAA	alt_5672_new	47	40	46	47	37	54	39	39	58	23
GCCGGACTAATCATTC	alt_5672_new	21	21	27	29	27	22	39	24	40	14
GGTGCAGCGGCGCGTG	alt_5672_new	24	35	34	18	36	35	30	30	38	30
GCTCTGCAATGTGGAT	alt_5672_new	1	0	5	3	1	1	0	1	0	0
GTTTGTGTGCCGTTTT	alt_5672_new	0	0	0	0	0	0	0	0	0	0
CGTTAGTTCAGGAATA	alt_5672_new	20	20	17	22	16	10	23	8	27	15
TGCTCTTAGGCCCTAG	alt_5672_new	16	14	19	10	19	17	15	10	9	5
CTTGTTGTTCCCCCTT	alt_5672_new	58	57	91	78	62	57	63	58	59	61
CCATTTAGCAGTAGCC	alt_5672_new	48	45	43	35	45	41	43	37	44	35
TGAGTTAATAATATCC	alt_5672_new	108	95	134	111	73	85	100	87	89	99
GCGAGATCGTATTTAT	alt_5672_new	32	32	37	49	39	34	42	25	34	29
AGGCGCGTGCTATGGA	alt_5672_new	48	46	67	65	44	54	50	56	51	35
GTGGGTTTTATGCTTC	alt_5672_new	19	21	29	23	28	16	20	16	22	18
TTTCGAATGCCTGACC	alt_5672_new	0	0	0	0	0	0	0	0	0	0
ATGTCCGTCTTCCACT	alt_5672_new	34	34	47	38	40	34	23	40	32	24
GTCACCTACAGCGGAC	alt_5672_new	23	10	13	20	17	16	16	10	18	8
TCGAGGGGTCTGCAAG	alt_5672_new	18	15	27	18	12	16	14	18	22	9
GGTTTAAACGGGATGC	alt_5672_new	34	30	40	28	48	30	58	27	35	25
TCCTTAGGAGACAACA	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GGGTATGGACTTAATC	alt_5672_new	39	46	62	38	40	40	63	37	37	41
GTCCCCATCTACGTTG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
AGTACCGGCAATGGTA	alt_5672_new	35	21	41	28	24	42	36	23	33	28
TTTATGTCTGGTTTCT	alt_5672_new	0	0	0	0	0	0	0	0	0	0
TGATTTAAAGACTTTG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
AGCTCGTGGGCCATCA	alt_5672_new	35	28	44	44	28	23	25	22	25	18
CCTTTCTTATTCGTTC	alt_5672_new	0	0	0	0	0	0	0	0	0	0
GTGCAGGGGAATGTCT	alt_5672_new	38	30	37	38	41	32	34	26	35	41
TTAGCTTTCATCCGTG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
CCAGTTTGTCCACTTA	alt_5672_new	16	19	30	21	22	31	29	27	33	16
CGTTTTTGGAACCACG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
ATCATATACATGTTAA	alt_5672_new	19	31	23	25	22	29	23	11	27	24
ACTCCAGCTAAATAGG	alt_5672_new	13	19	10	18	17	10	17	14	18	14
CGTGCCGTCTCCGCTT	alt_5672_new	27	30	27	13	21	20	27	16	12	14
TAAAATCGGGTCCTTG	alt_5672_new	0	0	0	0	0	0	0	0	0	0
ATGTTGCCGAATCTCG	alt_5672_new	14	11	17	19	17	13	18	20	16	17
ATAGTGACAAATGTTT	alt_671_RC	192	219	220	189	204	175	206	161	262	193
TTTTAGACTCGGAGGC	alt_671_RC	0	0	0	0	0	0	0	0	0	0
TCAGCAAATGTCATTT	alt_671_RC	0	0	0	0	0	0	0	0	0	0
ATGGGGTTCGGCATGT	alt_671_RC	1	0	0	0	0	0	0	0	0	0
ACTCGGAAAGATACAT	alt_671_RC	14	10	11	17	7	13	13	11	13	12
GCTTGTCATTGTGTGA	ref_671_RC	313	374	452	369	427	379	400	324	460	307
AGTCCGGTACGAATTA	alt_671_RC	37	33	44	41	51	33	43	41	40	36
ATTATTCTGCTTAAAC	ref_671_RC	112	101	150	116	99	130	114	93	103	91
GATCAAGTGATATAGT	alt_671_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTTTTGTTAAAC	alt_671_RC	14	20	16	14	24	25	14	12	24	9
CGACAGTTTTCTTTAT	ref_671_RC	31	27	36	36	34	24	36	38	27	34
CTATTTTCAAAAATTG	alt_671_RC	2	0	9	6	11	9	11	1	9	9
AGACAATACTTCTCTG	alt_671_RC	13	16	13	17	24	10	27	18	23	14
AGTTCGGTACTGCAAG	alt_671_RC	97	76	79	92	63	65	79	53	85	70
ACCTTGTGCTAGTGGC	alt_671_RC	8	14	10	8	18	7	15	7	18	3
GTTAAAGCGTTCACAC	alt_671_RC	7	12	19	9	17	7	27	16	6	9
CTTAGATCAGTATACA	alt_671_RC	25	24	25	17	17	16	14	19	20	14
GAGTCGCGTGTTGGCC	alt_671_RC	8	8	13	6	13	7	7	13	7	8
CCTTATACCGTTCCCA	alt_671_RC	14	18	29	21	22	16	21	18	24	21
TTCAGGCCATTTTGTT	alt_671_RC	45	74	65	42	38	61	51	54	57	42
ATACCGCTCGATTACC	alt_671_RC	10	25	18	13	28	18	31	12	29	12
TTCCGCGATGATTCCT	alt_671_RC	149	135	164	128	152	146	128	149	125	138
TATGGGGCTCCGTGGA	alt_671_RC	51	79	70	73	55	67	59	51	61	62
CTTTCACTCGCTTTCT	alt_671_RC	43	32	55	72	64	45	61	60	52	39
AGTATATTTCCTGTAC	alt_671_RC	36	37	40	26	29	24	51	42	36	34
CGTTGTAAGGTTTCCC	alt_671_RC	50	47	52	37	61	38	54	46	40	29
CTGCCAACTACGAGTA	alt_671_RC	0	0	0	0	0	0	0	0	0	0
ATCGCGGAAATCGGTC	alt_671_RC	0	0	0	0	0	0	0	0	0	0
ATACTTATTCGATACC	alt_671_RC	23	11	25	15	24	14	17	10	12	8
GCTCCTATTCTTTGTT	alt_671_RC	10	12	18	18	20	12	18	13	18	15
CATGCGACCTATGTGA	alt_671_RC	19	30	33	20	21	23	34	28	22	18
TGTTTTTGTCCAAACA	alt_671_RC	0	0	0	0	0	0	0	0	0	0
AATCTTCCTGGCACTG	alt_671_RC	0	0	0	0	0	0	0	0	0	0
TGCATCTTTTCAGTCG	alt_671_RC	0	0	0	0	0	0	0	0	0	0
CGGTGGCGTGCAAACT	alt_671_RC	45	42	47	53	54	43	50	35	45	31
AGAAAATCGCCTGTGG	alt_671_RC	0	0	0	0	0	0	0	0	0	0
TCCACGAGTGAACCTT	alt_671_RC	14	6	13	12	11	10	10	8	9	13
ATGGATACCATGAGCC	alt_671_RC	53	60	62	69	65	64	61	48	72	56
GTTAGGCGCCAAAGAT	alt_671_RC	7	12	19	18	16	20	19	10	18	12
ACGAACTTCTGTATGT	alt_671_RC	17	22	35	14	23	25	24	33	30	18
TCTCTTTGATTATCCT	alt_671_RC	0	0	0	0	0	0	0	0	0	0
TTTAGTCATGTTTTGT	alt_671_RC	53	56	73	62	76	57	53	66	81	57
GACTCACCCGACTGGG	alt_671_RC	18	22	30	14	18	17	15	10	20	18
GGCCGTTGACGGAAGG	alt_671_RC	1	2	1	2	0	1	5	1	1	1
TTGACTGGCCTAGCGT	alt_671_RC	0	0	0	0	0	0	0	0	0	0
ATTATGTGGAAATTCA	alt_671_RC	38	36	48	36	41	47	39	30	37	50
GTTTAACAACTCTTTG	alt_671_RC	46	25	39	36	43	38	34	41	45	28
ATTAGAGATATGGGCA	alt_671_RC	17	22	34	11	14	17	10	16	19	7
GCCAAGGCAGTATCTT	alt_671_RC	22	21	27	11	16	10	24	15	18	20
ATCGGCATTCTTGTGT	alt_671_RC	26	41	41	25	43	30	26	38	37	44
GCAACAATACTAACTT	alt_671_RC	48	38	47	40	31	36	50	31	42	32
GCTGCACCGTTTTATT	alt_671_RC	6	8	3	4	8	9	9	5	17	3
AATTCTTTGCACTCAA	alt_671_RC	27	46	38	40	42	44	27	38	59	24
CCGAGTTTCGTGGGTT	alt_671_RC	19	28	34	24	45	27	36	39	31	21
GCGTGTTTTGGCCCTG	alt_671_RC	11	21	12	19	15	11	19	17	13	13
CACTCTGCTGGGTTCG	alt_671_RC	0	0	0	0	0	0	0	0	0	0
GCACGTATAGTCATAA	alt_671_RC	73	62	78	69	76	68	99	70	66	61
CGTGTATTGTGTTGAG	alt_671_RC	0	0	0	0	0	0	0	0	0	0
TGCCAGTTGTCTCTCG	alt_671_RC	7	13	12	12	15	9	10	7	16	7
TGGAACATTCCGGGGC	alt_671_RC	65	51	56	45	51	56	50	53	45	41
TAAAACACCGACCTTG	alt_671_RC	28	16	30	30	28	32	29	13	26	24
ACGTGTCGTGTCTCAG	alt_671_RC	31	23	29	29	21	18	30	18	36	20
CTTGCTTTAGACGTGA	alt_671_RC	12	16	15	12	15	13	24	11	20	13
CGAAGCTCCACTGATA	alt_671_RC	139	154	179	162	142	158	151	152	154	130
GCGATCCCTTTCCTGC	alt_671_RC	47	54	71	43	73	56	74	52	61	58
CGTACATCGTTTGGGT	alt_671_RC	41	24	39	20	38	28	34	35	30	45
TCCCCGTTGAGTGTCT	alt_671_RC	0	0	0	0	0	0	0	0	0	0
ATAATCATGCGCTCAG	alt_671_RC	78	56	65	70	72	67	79	81	74	63
TAATGCCATATGCATC	alt_671_RC	50	78	60	45	55	49	60	51	63	38
ATCTGGAGTTATCTTC	alt_671_RC	76	64	81	60	69	49	67	68	74	48
AGTCACCGTACTAGGT	alt_671_RC	25	23	36	14	11	20	22	28	23	18
GTTGGAGACTTGGCTT	alt_671_RC	17	17	21	10	25	12	5	14	23	13
ACTGAGTTTAGGAATA	alt_671_RC	32	43	40	47	54	35	49	40	43	29
TGTACTTCCCGTTTAT	alt_671_RC	21	35	15	9	32	9	44	11	29	9
TTTGATGTTTGGCTAT	alt_671_RC	13	12	12	12	9	8	9	7	12	4
TTCGGAGATTAGATGA	ref_671_RC	278	103	317	286	109	278	134	260	129	234
CAACTCTATCAAGGTT	alt_671_RC	7	16	8	10	11	4	9	6	6	9
AATCGACGGGTCAATC	alt_671_RC	5	8	9	14	8	11	5	15	7	4
GTAGTAGAGGGGTCGG	alt_5935_new	31	14	44	28	22	34	24	25	12	29
CTATTTGTATCGAGAC	alt_5935_new	25	20	32	23	17	20	17	27	21	23
TTGTGATTTTGACTTC	alt_5935_new	69	49	103	81	55	85	52	68	34	69
CCCGCACAATGGAGGT	alt_5935_new	135	109	188	170	117	121	134	144	117	138
CCCCTTGACGACATCC	alt_5935_new	5	3	11	7	3	3	5	12	3	2
TGGGGTCTAAAATAGA	alt_5935_new	22	13	21	18	22	25	13	12	19	18
TTGCCTCCCAAGAACT	alt_5935_new	16	21	32	14	8	17	18	25	14	12
TGTTTAGCCCTCTGCC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
CTTGTATCACCGGCCG	alt_5935_new	101	92	107	115	114	99	109	117	94	89
TTTTCCATGCCCGTCT	alt_5935_new	32	20	26	30	19	19	16	15	18	20
TGCCCCATTGTTCTTC	alt_5935_new	31	11	37	22	24	33	23	38	29	16
TTATTTGTAATGGGGT	alt_5935_new	348	220	397	336	194	338	255	243	228	298
GGACACAACCCCCAAG	alt_5935_new	60	65	89	66	55	52	57	50	68	50
GACCCGATCGTAAGTC	alt_5935_new	39	41	36	51	30	30	26	32	27	29
AAGCAAACGCCCACCC	alt_5935_new	19	11	20	23	27	13	25	15	28	21
CCCAGTGTCTTGGTGC	alt_5935_new	23	37	13	16	38	30	34	24	45	13
CATCCATCTTCACGGA	alt_5935_new	35	33	36	64	36	53	48	49	38	36
CAGTAGAGATGCGACA	alt_5935_new	59	43	73	73	61	69	46	56	39	56
GGCATTGGCTAGTCGG	alt_5935_new	65	29	59	58	52	76	53	56	45	53
GGTAAGTATGCGTATA	alt_5935_new	0	0	0	0	0	0	0	0	0	0
TGGTTTAAGGAACCGT	alt_5935_new	56	51	98	71	44	49	45	70	59	57
ATGTGCGATCAGGCCG	alt_5935_new	17	18	28	31	18	27	11	28	14	23
AGGCCCCTGCTCTCCA	alt_5935_new	70	24	72	62	34	61	43	54	51	57
GTTGGTAGATTGCATT	alt_5935_new	42	29	53	25	28	32	19	44	24	43
TTCTGGGCATATGGGA	alt_5935_new	0	0	0	0	0	0	0	0	0	0
ACTTAGTCGGAGAAAC	alt_5935_new	7	10	18	12	5	9	5	13	8	7
GATACTATCAACATAG	alt_5935_new	34	23	48	33	30	36	32	27	23	28
ACATGGCACAATGCGC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
AACAGCCCGGAAGGTC	alt_5935_new	33	41	64	46	46	39	44	38	48	39
GGCATCGGTCTTTTCT	alt_5935_new	11	10	17	17	11	7	12	10	14	8
GCCGATGTCAGTTTTG	alt_5935_new	33	30	47	57	30	39	25	50	31	37
CACAGCACGGCATCAC	alt_5935_new	10	14	23	20	9	18	13	17	26	13
GGGTACAGAATGGGGC	alt_5935_new	11	12	25	28	14	28	11	9	13	26
TGACATACGCTGCGCG	alt_5935_new	100	65	112	100	81	116	83	106	84	85
GTTAACGAAGCTTTAT	alt_5935_new	102	79	114	112	37	96	67	105	71	92
TGGCAATAACTGCCGC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GGGAGGCATGCCAGCG	alt_5935_new	151	95	200	188	108	158	95	138	100	147
ATCGTTTTCTTAGGCT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
TTTATCGCATGAGGAT	alt_5935_new	76	57	95	111	43	78	45	83	46	65
GATCCTGCTTTATATT	alt_5935_new	92	64	96	102	61	91	67	76	62	84
TATTAAGTTGTACTGT	alt_5935_new	10	10	12	8	10	12	13	8	8	8
AGCATCGTTCTCATTA	alt_5935_new	42	24	35	37	25	26	26	32	30	30
TCCGTGCAATAAGATA	alt_5935_new	24	14	27	21	11	32	11	20	12	23
ATTGTATGGCTCACAC	alt_5935_new	11	7	22	11	6	10	6	10	9	6
TTCTTTCGATAAGAGG	alt_5935_new	29	30	35	31	20	48	20	23	20	23
TTTTTCTACTTCATTG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
TCAGTGTTTTTGTGTT	alt_5935_new	34	24	36	24	25	29	38	30	21	25
CTCGCAGTCTAAATGA	alt_5935_new	14	13	17	22	9	19	12	12	15	14
CGATGGAAAGCTCCAA	alt_5935_new	26	9	25	21	29	24	18	34	19	9
GGCTAGCCGCAACTCA	alt_5935_new	5	4	9	8	7	6	4	3	5	4
CTCATCTTTTGGTCTA	alt_5935_new	86	89	134	126	84	95	91	103	94	94
TAAGCAGAGTCGTTAC	alt_5935_new	95	85	123	101	83	100	72	100	86	81
CTCCTTTCCGGGTATG	alt_5935_new	51	26	61	56	29	54	42	46	29	44
TTGTTCTTAAGCGCTG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GCGTGCCTTACACGCA	alt_5935_new	43	24	47	44	37	55	34	39	28	45
CCCAGTCCAACCACCG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
TGGGCGTCCTGTGTAC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GGCTTTTAGATTATGG	alt_5935_new	95	55	112	77	42	77	59	60	53	72
CGGCGCGCAGGCATTA	alt_5935_new	168	152	196	176	157	134	154	177	174	137
TCGCGCTGGGTTCCTG	alt_5935_new	33	19	43	27	15	29	14	38	27	24
CCGTCAGTCCTTCACT	alt_5935_new	31	42	55	42	25	31	45	52	48	22
ACATAGTTTTAAACGT	alt_5935_new	291	202	334	312	255	222	233	308	233	253
ATTTTAGTGGCGTCTA	alt_5935_new	12	4	11	13	14	7	10	11	19	11
TCAATTGTGTGTGGGC	alt_5935_new	80	51	96	70	77	91	62	111	44	51
TTCTAGCTCCCGTTGA	alt_5935_new	88	63	91	96	64	53	80	103	77	70
ATTGATTTGCCGCTCA	alt_5935_new	120	95	157	117	93	146	106	128	97	118
TACTCACCTTTCTTTC	alt_5935_new	8	3	3	2	9	4	7	9	7	1
AAATTTTTCAATGCCT	alt_5935_new	10	5	13	12	5	8	1	9	3	9
TTCGTGCCGGCTTGGC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
CCTCTCTTGGCTGGTT	alt_5935_new	38	30	60	47	32	59	34	45	31	39
CCTCTAGTACATTTCT	alt_5935_new	102	105	168	134	101	103	97	108	99	124
CTGTTGCGTTGCGCTT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GGGCCCCCCTGCCTAG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
AGACCTATGAGCTCTT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
CTCAAAATTTGGCCCG	alt_5935_new	19	9	20	22	12	22	14	24	13	21
GGAATCAATGCCAGGT	alt_5935_new	190	123	234	184	117	217	142	194	168	180
ATCCTCGCATTCAGGG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GAGGCAAGTTAAAGAC	alt_5935_new	17	3	16	9	7	8	7	8	10	11
GTGAGAAGTACTGTAT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
AGCACTTGTTATATCT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
AGTGTCTCTGGAGTAT	alt_5935_new	18	13	16	16	15	15	12	15	12	12
TATGTCCATGAAAGTC	alt_5935_new	24	20	33	25	22	27	17	26	32	23
CGTCGTGAGTTGATTT	alt_5935_new	15	11	17	20	15	11	15	13	10	15
CAGGATGTAAGTTGAT	alt_5935_new	37	30	39	38	23	31	20	45	31	32
ACTCGCCTCTATTATT	alt_5935_new	38	34	53	38	23	47	39	45	38	31
CTTCTCTATCAGCATT	alt_5935_new	183	117	209	189	95	158	116	127	128	163
GATTCCGCTTTGTATC	alt_5935_new	82	53	102	93	50	81	61	94	37	82
ACAAATATCTTCGTAG	alt_5935_new	111	46	142	77	62	93	82	95	72	85
TATTGGCGCTGGTGTG	alt_5935_new	89	65	96	91	70	94	89	114	70	84
AGTTGTTCATGTTTTG	alt_5935_new	86	43	104	82	54	63	43	64	42	66
GCGGCTTTGTTGCAAG	alt_5935_new	46	31	55	48	29	46	32	40	35	39
ATACTCGGGCGCCGCC	alt_5935_new	54	47	65	47	35	49	42	53	46	35
TCGGCGTGACTATTCA	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GCTCTTACCCCCGACC	alt_5935_new	42	49	72	62	43	45	45	45	42	39
GTCCCCCGTGGTCGCA	alt_5935_new	17	9	11	9	10	15	7	17	17	8
ATTTCTGTGCTCTGCC	alt_5935_new	22	27	17	27	26	14	25	10	65	20
ACAATATGCTTGACGA	alt_5935_new	77	43	90	85	61	76	48	76	50	84
CGCTGGCTAGGTTTAG	alt_5935_new	51	35	69	60	26	45	42	53	37	40
GATTCGTGATACGTCT	alt_5935_new	10	5	3	9	2	9	6	5	9	8
GCTCATGGGCTTGTTT	alt_5935_new	40	24	57	32	32	32	24	52	22	31
CTTACGTTGATTGTCT	alt_5935_new	109	72	123	112	68	117	85	107	78	94
GTCCACCGGGGATATC	alt_5935_new	51	39	65	64	48	63	41	47	35	43
ACTTCTTTCCTCATCC	alt_5935_new	0	0	0	0	0	0	0	0	2	0
TGGTTATAGTTACGAC	alt_5935_new	47	15	53	46	25	38	30	36	32	48
GATTCCTCCTCGCCTC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
CTTCTTATTTCCCGCA	alt_5935_new	66	48	74	72	53	52	51	60	41	54
GCGCCGGTTTATTCAT	alt_5935_new	11	9	7	15	1	8	13	5	3	9
TGCTGCATTGTTAGGT	alt_5935_new	77	50	73	68	42	73	33	76	56	40
GACCGTTTATCCTATA	alt_5935_new	4	6	4	4	2	5	3	3	1	9
TGAGAGCTTCCCGCTC	alt_5935_new	13	20	34	30	9	32	32	39	19	21
GTTGTTTGCTGCGTCT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
AGCTGGACTCCTCCCT	alt_5935_new	7	10	4	2	5	2	3	9	5	6
TGCTAGGTTAACCACC	alt_5935_new	74	39	92	59	55	66	57	78	54	77
GCTACCATATGATTCG	alt_5935_new	72	55	67	66	60	56	48	48	65	62
ACTGCCGAACGCAATG	alt_5935_new	123	106	151	158	125	123	90	132	93	115
CGTGGTTTCCCCCTCG	alt_5935_new	7	7	10	12	8	8	8	5	4	6
AGTCTAGAACGCATTA	alt_5935_new	0	7	6	8	5	15	10	7	9	7
CCGTCCAGACCGGGTT	alt_5935_new	10	7	20	16	9	13	9	10	10	5
ACCGTGACATGCCCAG	alt_5935_new	14	7	26	18	15	7	7	19	18	17
CGGAGTCGGTGCAAGT	alt_5935_new	126	81	143	112	78	89	85	108	73	116
GAAGTAGAGGTCTCTG	alt_5935_new	14	10	17	14	13	13	16	12	8	16
GCCACGACGTCTATCG	alt_5935_new	2	1	5	1	1	1	2	5	3	1
CGTGGCTCTTGAAATG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GGCACTGGGTATTACT	alt_5935_new	54	40	62	70	39	57	22	44	40	69
GCGGTTATATCAATGG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
CTCCCTCAAGTGATTT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
AGGTGGAAACTAATTT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
TGTGCCATACGAAGAC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GTGCATTATTTGGTTT	alt_5935_new	20	31	33	22	16	27	14	28	23	19
TTCTTGGATTGCTGGA	alt_5935_new	60	39	69	74	47	72	27	57	44	54
GGGGTTTTTCCACTAA	alt_5935_new	43	15	43	31	23	33	19	26	28	20
AAAGTATATGTCCATC	alt_5935_new	17	11	29	7	14	20	12	21	11	8
GGAGCGATGGCTTCAA	alt_5935_new	20	11	28	32	10	17	17	14	13	27
CTTTTACCTTCCCTTT	alt_5935_new	26	14	27	14	15	20	8	18	10	20
TGCGCGTCATGTTCTC	alt_5935_new	78	47	90	77	36	71	41	74	58	72
TTAGAATCTTCGGTAC	alt_5935_new	101	76	126	118	61	95	71	81	80	80
ACCTTGGTAATAGTTC	alt_5935_new	102	86	133	92	79	69	78	78	78	78
TACAGTGGTCACTCAT	alt_5935_new	30	21	35	26	31	35	19	39	13	22
GGCAGCTTCCGACTAC	alt_5935_new	0	0	0	0	0	0	0	0	0	0
TCATCTCGGCCCTTCG	alt_5935_new	7	3	4	5	3	5	4	2	2	2
CGGGAACGACGTCTCA	alt_5935_new	33	14	37	26	26	34	24	31	31	32
ATCTGTCTCATAAATT	alt_5935_new	24	17	30	23	15	22	18	30	25	20
CGACCGTTCTTAATAT	alt_5935_new	27	37	50	25	37	32	31	39	26	21
GTATCGTTAGCGCATA	alt_5935_new	57	61	74	72	38	44	44	56	67	64
CTCTTGGTTCCCGGTG	alt_5935_new	54	34	51	54	34	49	27	49	32	35
AGTGATGCAGCACCCT	alt_5935_new	3	1	4	2	2	2	1	2	2	3
GCGCCTAAATGTCTTC	alt_5935_new	81	48	81	53	57	59	61	75	54	52
CTGGCACTATATGAAG	alt_5935_new	35	21	53	28	16	26	19	26	26	32
GGAATATATATATACT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GGGTACTCTTGCTGTG	alt_5935_new	8	7	8	3	4	3	4	4	6	8
TGACAGCTGAGATATC	alt_5935_new	56	43	55	47	42	49	34	40	32	41
AGTCGAGCTTAGGGTG	alt_5935_new	36	19	31	28	13	28	20	23	25	26
CATTGAGTGCTCGCGG	alt_5935_new	15	15	17	10	10	9	12	4	3	10
TGCACTTGTTATATCT	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GGTGCAGCTTCTATCT	alt_5935_new	45	25	51	46	33	37	28	48	39	29
GATTACTGTGTATTGT	alt_5935_new	18	18	32	23	21	27	16	24	14	24
TCCGTGAACGCAAAAA	alt_5935_new	513	337	714	577	375	551	399	583	452	521
TGCGTACTTAAGGAAT	alt_5935_new	15	11	20	14	7	10	4	12	12	13
CCTCGGTCATGTGTAT	alt_5935_new	16	10	30	19	21	16	23	16	18	14
GGCAGGCCAGTTGGCA	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GTACATATCAGATTGA	alt_5935_new	0	0	0	0	0	0	0	0	0	0
GGCCAAACGGAAGGGG	alt_5935_new	113	78	146	120	95	92	90	112	112	111
TTTCCCTGTGACCAAC	alt_5935_new	63	30	72	72	36	61	45	55	43	62
CTGGGAGTCTTCAGTT	alt_5935_new	5	16	14	13	10	13	15	11	11	12
GAACAGACCGCTTCAG	alt_5935_new	0	0	0	0	0	0	0	0	0	0
CAGCTCCGGTCCTATC	alt_5935_new	90	43	95	87	57	87	74	93	77	72
AAGTCTGATGTGGTCT	alt_5935_new	13	9	32	26	13	25	19	12	15	11
TCCTATCTTGCTAGCT	alt_5935_new	151	93	134	145	116	140	92	136	101	124
GGGCCACTTCTGACGA	alt_5935_new	10	3	7	11	5	4	6	9	7	8
TGAATAAGATCGGTTA	alt_5935_new	47	32	72	59	49	48	29	44	44	47
CATCTAGTGTACCAAA	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGGCGATCTTTGT	ref_5038_fdr	49	50	66	55	30	67	43	43	57	36
TTTCGTAAGTTTGTAA	ref_5038_fdr	19	29	51	30	27	29	30	20	28	29
CTCGAATACAATCATC	ref_5038_fdr	159	119	191	179	131	134	114	161	153	135
GAACTGCTAGGCTTGG	ref_5038_fdr	13	11	29	12	14	19	19	22	21	23
CGCTTTTGCTTTCACT	ref_5038_fdr	89	80	120	98	67	88	60	94	98	80
GACCTTGGGCGGGGCT	ref_5038_fdr	26	32	35	27	39	26	30	31	40	17
CGGTCCCGTTATGGCT	alt_5038_fdr	135	104	150	131	116	115	109	115	122	109
ATAAACATGCTGGAAG	ref_5038_fdr	94	75	128	113	75	106	83	90	71	112
ATCATTTAATTTCTTG	ref_5038_fdr	44	33	62	53	45	44	44	61	32	30
AACCTGGGGTAGTTTA	ref_5038_fdr	38	36	61	53	53	57	48	60	46	47
TATGACCAGGTATTAA	ref_5038_fdr	80	83	123	95	59	95	95	80	83	94
TATTTCCTGGGAACGT	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGATAATCGTTAG	ref_5038_fdr	7	3	8	5	2	3	6	7	6	9
GAAGTGAGGCTGCGTG	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
GATTTGGCGTCCGTAT	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTTGGCATCTACT	ref_5038_fdr	4	12	15	16	1	13	9	9	13	19
TGCTAATTAAGTATGT	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAGCAATTTCGTT	ref_5038_fdr	30	32	50	63	49	30	40	52	39	39
GGAAGTCCCTGTTCGC	ref_5038_fdr	67	56	129	102	59	63	57	79	77	81
CTTTGTAAATGATATT	ref_5038_fdr	22	22	39	33	26	21	15	30	24	27
TGTCACTTGATAAGGG	ref_5038_fdr	8	9	9	17	6	19	4	12	9	9
TAGATCAAGTGCAATA	ref_5038_fdr	0	0	3	3	0	0	2	0	1	2
GCGGGTCACGTTTTCG	ref_5038_fdr	14	13	17	9	18	17	14	17	23	8
ACGTATCGGCGTGGCC	ref_5038_fdr	59	53	63	54	61	67	47	64	43	51
TACTTCGAAAACTACA	alt_5038_fdr	147	138	211	190	153	154	146	161	199	138
GCCTCGGGTGCTTGTC	ref_5038_fdr	82	91	108	97	103	82	94	80	105	83
CATTATTATTCATGTG	ref_5038_fdr	19	21	27	29	18	19	14	16	17	14
TCAATCCCGTCTATAA	ref_5038_fdr	102	127	134	132	140	100	143	116	159	107
CTTTCGAGTTGTCTTA	ref_5038_fdr	2	4	0	2	2	6	3	1	5	1
GTCCCTTTTCTACCGC	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
GTCACTTGTTCACAAT	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
AACCATTCAGCGTGCG	ref_5038_fdr	48	34	59	62	34	51	39	48	42	38
CCATCCAGTTTCTTTG	ref_5038_fdr	1	8	12	3	5	7	5	7	9	5
GAGGCTCCGCCTTCCC	ref_5038_fdr	6	17	10	16	4	16	13	17	11	15
TATTGCTCCAGCTAGT	alt_5038_fdr	186	55	245	192	56	195	50	205	52	201
AATACTGGGTGTGTCT	ref_5038_fdr	20	33	30	31	28	33	34	32	31	19
GGTCTATTTAGTCGTT	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGGTGATACGCAG	ref_5038_fdr	28	23	15	29	18	21	25	35	26	19
AGCAACTTGTCACGCG	ref_5038_fdr	29	35	43	44	33	45	38	37	42	31
GGTGATCGTGAAATCC	ref_5038_fdr	100	96	127	141	102	111	102	122	101	98
GAGACCCTGAAGAGGA	ref_5038_fdr	53	26	87	66	57	77	63	62	57	55
TACTGCTCTTCACGCG	ref_5038_fdr	58	32	61	39	36	47	35	42	30	39
TAGCTCCGCGCTGACA	ref_5038_fdr	33	24	47	28	22	39	17	23	21	22
GCATAGTCATCATGCA	ref_5038_fdr	18	12	30	11	14	22	22	32	13	22
TCAAATAACGCAACTT	ref_5038_fdr	30	22	58	44	26	33	46	20	32	28
GGTGACGACGTAAACT	ref_5038_fdr	57	37	51	50	40	65	32	46	49	44
GACCGCCTATTATTGT	ref_5038_fdr	47	46	48	50	39	53	60	67	46	55
CTATTGAAAGGGCTGG	ref_5038_fdr	84	73	101	95	82	86	83	75	91	79
TCAAGTGGTGCAAGTT	ref_5038_fdr	29	23	36	20	24	23	33	20	25	22
TCGGTCGTTGCGTTGC	ref_5038_fdr	12	48	17	13	75	18	62	15	59	14
GCGCCGGCACGTGCCC	ref_5038_fdr	19	8	22	19	20	19	23	12	22	7
CGGTCAGCGTGCATAG	ref_5038_fdr	17	15	26	24	23	11	24	18	11	20
CTTGTCTGAACCTAAA	ref_5038_fdr	11	11	7	14	8	13	8	5	11	10
CGTAAAATTGGTGCCT	ref_5038_fdr	20	10	24	12	8	15	23	15	15	14
CTTAGGTACATCCGGT	alt_5038_fdr	58	39	52	43	51	41	44	28	32	38
TAAGTGACATTGCTAC	ref_5038_fdr	53	54	93	49	50	56	48	57	51	49
GAGTGTATTAACAGCT	ref_5038_fdr	4	2	2	4	4	1	7	0	1	3
GTAGTCTCGGAACCGT	ref_5038_fdr	44	45	40	61	34	42	33	28	55	33
ATTGTTGGTCCCGAGC	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGAGTGAGTAGCC	ref_5038_fdr	15	22	37	9	12	13	24	15	20	17
ATACCATCGCGTCGTA	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
CACTTTCAAAGAATCC	ref_5038_fdr	40	54	66	55	51	46	65	56	56	36
TAACGTACTTGGCATA	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGTGGTGATCATG	ref_5038_fdr	91	70	101	75	63	74	76	84	82	73
CTCTGCTGAAATTGTT	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGGCTTGATTCAG	ref_5038_fdr	84	52	79	83	61	61	56	61	67	79
CAAAAGAAGCTTATTT	ref_5038_fdr	0	0	0	0	0	0	0	0	0	0
GGGGATGACCCGAGAG	ref_5038_fdr	29	21	40	27	19	29	28	32	22	27
GTCAGTTCTTGGCGCG	ref_5038_fdr	20	28	35	37	20	12	27	31	20	27
CGTTAGATTTACTGCG	ref_2078_fdr	148	190	150	143	211	158	183	133	212	128
GAAATGCAGTTTGGAT	ref_2078_fdr	32	55	58	39	46	33	64	42	45	48
TATAGTTTACCTGCTG	ref_2078_fdr	16	16	17	19	29	14	22	9	26	9
CTCACATCACTAGGGG	ref_2078_fdr	36	66	65	48	74	58	97	53	79	60
CCATCTAGATGTTCAC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTGAGCCTAACCT	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTTAACTTTCGGC	ref_2078_fdr	24	20	19	17	15	20	19	9	28	12
AATTGTAGACGACCCG	ref_2078_fdr	15	14	23	15	20	5	11	6	15	8
AAACAAGCCCAAGATT	ref_2078_fdr	88	124	118	85	120	95	136	96	155	77
GAATGCAATTGGAATC	ref_2078_fdr	40	40	33	46	53	33	48	33	58	25
GGGTAGACGCGATACG	ref_2078_fdr	4	5	13	14	10	7	10	11	8	4
ATGAGAAGACGTGACT	ref_2078_fdr	23	29	30	33	27	39	35	25	29	23
CGATGAGATCCGCCCT	ref_2078_fdr	6	9	6	13	15	8	15	6	15	10
GTTAGTGTTAGTGTAG	ref_2078_fdr	15	13	12	6	11	10	13	9	17	6
TTCACCTGCTGTCTAT	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTCTCTGGTTACT	ref_2078_fdr	42	43	65	46	70	45	72	44	43	43
CACAATAATTCGGCCA	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAAGATCTCCTAA	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TATTGCACACTTTGAA	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
GACTATGCTCTACGTT	ref_2078_fdr	104	130	101	93	129	102	100	96	107	75
AGTGGTCCTAAATAGT	ref_2078_fdr	13	13	13	10	12	2	15	4	13	4
TCATTCATAGAACCAT	ref_2078_fdr	62	99	92	79	97	58	97	71	106	68
ACTGAGGGTAGCTGGA	ref_2078_fdr	46	55	57	49	71	37	54	36	77	49
TACGTCATCGTCACCC	ref_2078_fdr	214	245	302	210	252	200	255	217	289	207
CCGTGTCGGCTCGGGC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGGGCTAGTTAGC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CCTAATGTGTCCTGCA	ref_2078_fdr	42	72	46	47	59	33	57	47	67	38
TTCTAGATGGACTAAG	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
GGAGGATCGGCACTTC	ref_2078_fdr	20	23	16	11	14	26	18	14	20	21
CTCCAATCGGCGGCTG	ref_2078_fdr	56	56	68	53	51	45	56	48	86	50
GATTTCCCTCGTTGGT	ref_2078_fdr	35	32	29	23	35	31	35	24	23	17
GTGTGGTCAAGTCCAT	ref_2078_fdr	11	13	7	11	21	3	15	16	21	14
TCGCAAAATATTACTG	ref_2078_fdr	17	23	14	16	32	13	26	12	21	14
ATTACCCAGTTATGTG	ref_2078_fdr	17	23	18	15	23	13	25	14	19	17
ACGGTTTTTTCCTATG	ref_2078_fdr	62	79	63	58	82	62	75	53	67	59
TACCGCTCACTAACAA	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CTATGTGAGTCTCGTG	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGTGTTGAAACAG	ref_2078_fdr	13	10	13	9	11	7	15	10	8	8
CGGTCACTGGGAGTTG	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTTTCCGCATTAG	ref_2078_fdr	36	21	33	21	31	26	43	19	30	27
TCCGTACACGTTAAAG	ref_2078_fdr	6	6	15	12	17	10	10	9	9	8
TCGTACTATGTATACT	ref_2078_fdr	13	35	23	30	41	15	26	24	35	23
TAACAAGCCTTTATAT	ref_2078_fdr	33	44	27	36	45	32	35	28	40	32
GTTTTCTCGATCGCAC	ref_2078_fdr	26	22	21	21	32	28	30	14	31	15
GTTCCGCTTAACGGGG	ref_2078_fdr	26	25	25	21	25	24	32	16	29	18
CGTATCTTAATCGCGG	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTATGATGGTGT	ref_2078_fdr	19	21	22	20	30	24	45	22	34	23
TTCATTCTTTTTCATT	ref_2078_fdr	24	31	39	28	20	22	35	23	29	23
TGAGACGTGGAACTTG	ref_2078_fdr	78	101	98	87	99	68	100	64	110	65
TTATTGCACGGTAGAG	ref_2078_fdr	15	16	17	16	33	15	23	12	19	8
TTGACATGGGTATTCT	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGTCCTATACCCC	ref_2078_fdr	51	74	62	71	70	68	93	56	123	50
GTTGCACATGAGGGCT	ref_2078_fdr	36	44	65	47	54	38	51	32	57	29
TGTCATGTGGGGTCGA	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CGGCAAAACGTATTTG	ref_2078_fdr	1	10	3	2	4	3	5	3	6	3
CCCTGATAATTTAGGT	ref_2078_fdr	8	5	10	7	10	15	8	4	8	4
TAATAACGAACACCAT	ref_2078_fdr	59	62	62	54	49	38	59	53	55	45
TCGTAGCTGGTAGGCG	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGTCATCGTTCTC	ref_2078_fdr	18	9	17	14	12	12	6	16	18	18
AGCCATGCCATGCGCG	ref_2078_fdr	63	88	88	83	93	51	82	61	94	43
AGTGGTTAACTTTTAA	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTCTGATTACTTC	ref_2078_fdr	40	41	48	36	41	23	49	38	35	40
CGTGCTCTATGCTCTT	ref_2078_fdr	21	40	23	32	37	17	32	30	32	16
CGCATAATTTAAACAT	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGTCTCTCCCCTC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
GGTACGCGCTCGGCTC	ref_2078_fdr	27	26	30	30	42	32	53	27	39	25
TTTCGGCGTGTTTGCC	ref_2078_fdr	20	21	16	11	16	16	18	15	24	10
CCGGGTGTCAATATCC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CCGGATGTCAAGTAAT	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
AGTGACCCAAAGAAAC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
GATTCAGTCCTCACTC	ref_2078_fdr	20	17	15	14	17	18	21	17	23	19
CGCCCAGGTACTTGAC	ref_2078_fdr	26	28	26	15	23	22	26	18	28	26
ATGGTGTGTGGGCGAC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTGAAGCCACAC	ref_2078_fdr	151	159	160	160	165	121	157	128	172	101
CTAAGACATCCTGTTG	ref_2078_fdr	60	111	87	75	108	54	130	58	127	52
TTGGTCTGATCTTATT	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
CTCAATAATTCGGCCA	ref_2078_fdr	112	140	139	93	128	115	129	110	148	81
TAAAGTCCAAGTGTCT	ref_2078_fdr	10	20	5	13	10	11	11	13	24	11
ATTACCTCCTCGGATT	ref_2078_fdr	18	31	26	27	27	18	32	16	20	23
AACCGCATCGCAACGT	ref_2078_fdr	38	73	47	57	80	57	80	62	87	58
CGGCTCGGGACGTTTC	ref_2078_fdr	18	43	16	21	51	15	41	16	61	13
CATAACGGCCTAGGTA	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTCCAATAACAT	ref_2078_fdr	5	8	6	8	4	4	4	6	9	6
GCGATATTCCCGAATA	ref_2078_fdr	14	15	12	12	16	13	16	8	16	12
TTTCTTGGTGTTCTTT	ref_2078_fdr	8	16	13	7	11	6	15	13	12	9
TTGCATGTCCGTAAAT	ref_2078_fdr	8	7	6	10	12	8	9	8	11	5
AATTTGGATACTGAGC	ref_2078_fdr	26	49	22	40	57	24	49	27	35	26
TGAATTATACTCTCCG	ref_2078_fdr	52	51	59	51	58	34	46	47	70	46
AGCACCATCTACGTCC	ref_2078_fdr	24	44	29	23	38	26	41	33	31	25
CGATACTGTTACAAGA	ref_2078_fdr	12	11	18	8	5	7	23	12	14	11
GCTTTTTTAAGGTTTA	ref_2078_fdr	37	47	45	48	61	31	55	42	45	30
GGATTCTTAGGCATGT	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
GGCTATGTCGTCTTGG	ref_2078_fdr	81	87	103	77	97	78	75	89	72	67
ATGACCCCTATTTCAT	ref_2078_fdr	30	35	31	25	25	28	39	21	26	23
CGAGACAAGTTGTTTA	ref_2078_fdr	87	208	141	129	211	102	226	112	245	116
CTGCACTCTAATACTC	ref_2078_fdr	60	71	72	67	96	57	93	50	110	60
CGCTCCCGGATTTTAG	ref_2078_fdr	35	66	43	44	85	43	61	42	54	26
ACTAACGTTTTGTGGC	ref_2078_fdr	44	55	45	30	51	48	57	38	47	34
TTTGGACCAGGAATGG	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TTCATTCCGTGTTATC	ref_2078_fdr	87	115	145	107	130	100	130	101	126	88
ATAGGGGCGGTCAAGG	ref_2078_fdr	47	61	59	62	91	54	77	61	90	48
CTACCCTCGGATTTGC	ref_2078_fdr	89	154	125	91	142	94	135	80	154	93
TAGGCATGACCTTCTA	ref_2078_fdr	76	41	58	54	55	43	60	45	74	44
CTGATGAGATCATCTT	ref_2078_fdr	5	5	7	8	4	3	3	7	3	3
AATGATTGATGCCTCT	ref_2078_fdr	10	6	17	19	17	13	14	12	10	10
TTAAAGACTTCGATCA	ref_2078_fdr	17	35	37	18	28	17	22	19	27	21
GCTCAACAGGTTATAA	ref_2078_fdr	8	6	7	9	6	7	16	6	16	12
TTCAGATGTCCACGAG	ref_2078_fdr	12	29	19	15	17	7	15	17	35	13
CACAGTTTTGTCGGCC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTCCCCGCACCA	ref_2078_fdr	26	45	25	21	34	18	47	22	39	19
GTGACTACAACGTCAC	ref_2078_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGTGGTTTCGCTA	ref_2078_fdr	24	29	26	16	31	18	31	18	37	19
TTAACATAGTTCAGCC	ref_2078_fdr	16	29	14	16	33	14	38	15	39	22
CTATAGATTTACCCTC	ref_2078_fdr	8	16	13	10	17	9	12	28	19	8
TACAGCAATCTGCCAC	ref_2078_fdr	6	12	6	7	8	6	4	7	8	2
ACACTGCTCATACATC	ref_2078_fdr	90	134	84	85	151	68	152	85	173	65
TCTTTTAAGCATGATT	ref_2078_fdr	32	50	54	36	56	42	67	37	69	49
CGCCGCCTATACATAG	ref_2078_fdr	15	33	31	17	39	18	48	32	41	16
AGGCCGGATTGAGCGC	ref_2078_fdr	19	37	25	20	21	15	35	20	35	26
TTAGCGATTCCAGTCC	ref_2078_fdr	6	8	9	7	11	15	8	13	6	13
GAGTCAACGCGGGATT	ref_305_missing	83	102	100	85	111	94	104	78	104	82
TGGTATTGACACTCAA	alt_305_missing	26	50	34	33	52	31	44	43	56	38
CATGCACACCTTACCT	alt_305_missing	0	0	0	0	0	0	0	0	0	0
TATCTAATTTCGCTCT	alt_305_missing	7	6	15	8	12	6	20	13	18	7
GGTTAGGAAGGGCTTA	alt_305_missing	5	12	7	5	7	9	7	5	13	7
CATCCATACAGTTGAG	ref_305_missing	236	281	240	218	298	182	321	183	303	191
ATTTTCGTTCTGACCT	alt_305_missing	91	91	103	89	100	96	93	90	97	80
ACCTATTTGAACATTT	alt_305_missing	22	24	42	25	39	8	24	28	38	17
CATTACTCTTAACAGT	alt_305_missing	12	17	12	17	22	12	25	12	33	14
ATGCTTTATTCCATGC	alt_305_missing	4	12	10	11	15	11	9	1	11	4
GTTCCTTATCCGCTTC	alt_305_missing	10	11	23	12	22	29	12	11	25	12
ACTGATTACGTTGGCA	alt_305_missing	83	127	119	71	104	85	140	78	100	85
CCCTGTTTCTCCGGTG	alt_305_missing	17	24	21	24	37	21	32	22	33	18
TCAGGGAGGGGCCTAA	alt_305_missing	19	13	10	10	18	10	23	9	21	16
TGTAATGTAACCGTTC	alt_305_missing	14	13	17	10	17	10	24	20	21	11
CCGTGCGATCGGCATA	alt_305_missing	28	28	28	20	35	30	27	15	26	21
ACCCAGTCCTGTCTAC	alt_305_missing	59	54	57	54	65	53	62	61	60	58
AGCCCGGCGTCTCTCT	alt_305_missing	3	5	5	14	15	7	18	8	8	9
AGTACCATCGCTAGTA	alt_305_missing	0	0	0	0	0	0	0	0	0	0
GGTTGCGATCCTTGGC	alt_305_missing	29	42	24	38	27	20	41	20	23	30
TGTGCAGCCATCCGCT	ref_6083_new	20	29	36	13	39	16	39	25	42	8
TCTTTACGCAGAGAAG	ref_6083_new	0	0	0	0	0	0	0	0	0	0
AGGTGCCACCGAAGAG	ref_6083_new	0	0	0	0	0	0	0	0	0	0
CATGAACTCGCAGCCC	ref_6083_new	15	18	19	15	18	10	26	11	20	14
ATTACCGTCTCCCCCA	ref_6083_new	0	0	0	0	0	0	0	0	0	0
TCAGGGACACATTGCC	ref_6083_new	6	31	12	12	28	15	34	10	32	8
CCGCATTCGGGAAGAG	ref_6083_new	85	107	111	86	128	97	134	73	153	89
CCCAACAATAAGCCTT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
CCGCACACATGTGCAT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
TGCGCCTTGTAAGGTG	ref_6083_new	17	56	33	31	58	29	56	37	63	24
TTTATTCTTCCGGTGT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
GCGGACCGCTAGGTTT	ref_6083_new	20	20	34	21	45	25	37	22	52	32
CGGGGTTGTCCTTCGC	ref_6083_new	0	0	0	0	0	0	0	0	0	0
TGTTTACCTATGATTC	ref_6083_new	0	0	0	0	0	0	0	0	0	0
CCGTTATATATTTGGG	ref_6083_new	0	0	0	0	0	0	0	0	0	0
GATTCCCGATATAGTT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
AGTATGGTACTTCGCG	ref_6083_new	7	11	11	10	8	14	24	2	16	6
TTCCAGAATATTGCAG	ref_6083_new	20	30	20	16	32	15	37	14	37	23
GCTAGCTCTACACGGG	ref_6083_new	0	0	0	0	0	0	0	0	0	0
CCAGTCTGTTTTGTAA	ref_6083_new	29	38	30	21	44	18	42	23	42	15
GTGGCCATGCCAGGGA	ref_6083_new	14	10	8	13	10	13	12	8	9	7
CTCGTGGTCAATTTAT	ref_6083_new	18	11	14	13	11	8	17	9	16	12
TGTATTTTGCCGTTTT	ref_6083_new	20	45	27	25	35	33	51	25	71	26
GTCCGGCCGAAAACCT	ref_6083_new	43	113	30	47	116	43	122	35	99	38
GATTAATGTAATTTTG	ref_6083_new	29	47	39	18	39	34	36	24	44	28
ACCCTTAGTGGCTTTC	ref_6083_new	27	31	34	19	37	25	46	23	48	23
TACCCCCATTAGCCCG	ref_6083_new	0	0	1	1	2	4	2	1	2	0
TTGTCCCGGGCCACAT	ref_6083_new	16	15	18	14	22	10	17	12	22	25
CAGTAGCCACTAACTT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
AAGGGTTTACATTCTA	ref_6083_new	0	0	0	0	0	0	0	0	0	0
AATGTCATTATAATAT	ref_6083_new	10	11	21	18	22	11	23	10	19	9
TCCTCTGGCTAGATGA	ref_6083_new	32	43	38	32	42	31	46	33	43	30
ATTTTCTGAGTGCCAT	ref_6083_new	4	4	5	6	5	9	8	1	6	4
ATCAGCCTTAGCTGTT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
ATTTTTAAGTTGTGTC	ref_6083_new	0	0	0	0	0	0	0	0	0	0
AATCCAGTTGCTTAAT	ref_6083_new	8	24	22	17	28	14	19	9	14	17
CGAGCCTATTCAATAG	ref_6083_new	0	0	0	0	0	0	0	0	0	0
TATCATAGTCAGTCAT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
TAGTAAGTCCAGCGTG	ref_6083_new	11	17	6	14	17	9	10	10	10	6
TCTCAGAGTACCTGAG	ref_6083_new	0	0	0	0	0	0	0	0	0	0
AAAGTCTTAGTCTCCA	ref_6083_new	0	0	0	0	0	0	0	0	0	0
AATCCTAATAGGTTCT	ref_6083_new	6	8	11	4	9	7	16	5	10	7
GACTGTTCCGAACGCG	ref_6083_new	0	0	0	0	0	0	0	0	0	0
GGCGGACGGCTATTAC	ref_6083_new	29	39	46	34	34	26	46	25	42	16
GCCGCCTAAGTCCCTT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
CTCCTTTGCTAGCATC	ref_6083_new	12	55	16	10	69	19	53	20	63	16
TGGCGCGGCACGGTTG	ref_6083_new	8	22	13	16	16	5	17	11	24	13
TGAGGCGTGGAGCGTG	ref_6083_new	1	1	4	0	1	2	2	3	3	5
CGCCATTCTATTTGCA	ref_6083_new	7	7	9	10	14	7	11	5	15	4
GACCAATGGGCGTTAG	ref_6083_new	19	28	13	18	20	20	22	17	43	24
CGTTAGCCTTTCCGAA	ref_6083_new	8	19	9	9	8	11	8	5	15	7
AGGTGTCACTTGATGC	ref_6083_new	20	37	22	15	48	17	40	13	34	22
GCACGTGAAGTGTTTA	ref_6083_new	0	0	0	0	0	0	0	0	0	0
ACGTAAAATGGATGGT	ref_6083_new	9	16	14	15	25	9	30	10	19	17
TAGGATTGTTAGTTTC	ref_6083_new	0	0	0	0	0	0	0	0	0	0
TGGTCTGTTGGCTCTC	ref_6083_new	24	49	19	35	58	35	49	27	56	33
TGGCCTTCTGAATCAT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
TTGTAATTCTTGAGTT	ref_6083_new	3	4	3	2	14	2	12	6	8	3
CATTCGATCATTACCA	ref_6083_new	7	5	6	2	5	3	11	5	7	5
TGCGGTCAGAGGGCCG	ref_6083_new	15	29	10	17	18	13	28	15	31	15
TAATGGTAACGAAGAG	ref_6083_new	14	13	17	14	24	11	10	8	35	21
GTTAGAAAAAACAGGT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
CCTTTTTTCGCGGGTT	ref_6083_new	0	0	0	0	0	0	0	0	0	0
GTTCCCAGTAGTCCCC	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGGTGATTCTAGA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGGCATGGTGGTT	ref_3247_fdr	211	46	236	235	45	192	51	188	48	167
GATTGAGCTAATCCAC	ref_3247_fdr	197	36	233	216	31	187	30	210	32	178
CTCCGTTTAGTTTGTA	ref_3247_fdr	9	1	6	8	4	10	1	5	3	15
GGATACTCATAAGTTT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
TATTGATCATCAACCG	ref_3247_fdr	41	8	65	46	14	61	10	46	12	63
GATACGATATCCTCCT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTGAGTATTTCAT	ref_3247_fdr	417	86	499	427	85	392	96	408	76	340
TTAGGTCATAGGCATA	ref_3247_fdr	155	33	229	207	28	176	42	172	54	162
GCCCCGTGCGTGCGTC	ref_3247_fdr	110	20	133	122	17	92	18	88	17	92
CTCCGTAACCCGTAAT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAATTCTTTAAGG	ref_3247_fdr	50	4	80	53	9	60	7	47	4	38
CACCCAAAACAAAGTG	ref_3247_fdr	165	23	193	169	27	152	23	201	26	149
GCCACTCGGTTGCTCT	ref_3247_fdr	183	62	264	285	49	220	75	201	67	189
GTGTGACCGTTATTAC	ref_3247_fdr	176	42	242	203	36	159	34	186	42	181
GGCGGCACATTTAATC	ref_3247_fdr	207	32	287	222	45	179	33	208	30	152
TGTCACTCATTGCTAG	ref_3247_fdr	183	41	244	194	51	204	59	189	45	184
ATCCACAGTAAACCAG	ref_3247_fdr	87	18	104	87	16	91	19	72	15	64
ACTAACTGTCGCTGTG	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTGACGTTTTAAA	ref_3247_fdr	63	18	83	75	22	58	17	64	25	53
CCATCTAAACGCGCCA	ref_3247_fdr	104	22	138	101	20	102	18	90	21	91
CACATGATCCGTGGCC	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCCGGCTACCTTG	ref_3247_fdr	55	7	73	53	9	51	11	59	14	42
TCAGTACGTCAGGGTC	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCCTTTCGCTGTC	ref_3247_fdr	6	3	12	5	0	11	2	5	0	6
TTGTATTCAGCCCTGC	ref_3247_fdr	272	47	368	307	51	240	50	304	45	241
CTCACTTTCCACCCAT	ref_3247_fdr	39	10	68	56	16	42	12	59	16	43
ATTGAATCAAGATAAA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTTTTCTAGGCA	ref_3247_fdr	46	6	39	38	8	34	8	32	15	42
ACTGCTGCAATCCCCT	ref_3247_fdr	367	64	507	497	61	359	72	397	70	379
GTGCTATTTACGTTCG	ref_3247_fdr	167	32	203	194	32	175	53	161	35	144
TGTGCTCTTGAGTGTC	ref_3247_fdr	228	32	252	227	41	229	44	225	56	199
CCAACTGTATGGGCGG	ref_3247_fdr	83	16	103	101	13	83	25	93	21	80
TTCGAGCATATGCGGC	ref_3247_fdr	136	39	150	167	33	134	25	142	20	135
GAGCCCCGCCTTGTTC	ref_3247_fdr	56	18	88	92	11	69	9	72	15	71
ACCGAGTCCATGGCTG	ref_3247_fdr	88	13	80	69	21	77	14	63	11	62
TGGAGGCCTAAGCCTC	ref_3247_fdr	312	51	421	349	66	283	59	323	65	293
ACTCCCGGTGTCTGAG	ref_3247_fdr	245	60	254	247	51	192	71	234	57	200
CAAAGCAGACATTTCT	ref_3247_fdr	88	14	104	89	16	85	17	84	10	62
CGTGCCGTTTCGTAAA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGATTTGTTGTAT	ref_3247_fdr	592	123	743	669	124	566	130	575	122	557
ACCCATGGCCCATCCA	ref_3247_fdr	25	5	31	29	9	20	3	14	4	23
TAGCTAATCCGGTTTC	ref_3247_fdr	181	36	234	183	33	185	22	192	42	149
CGCTAACAGCCCTCCA	ref_3247_fdr	34	22	53	52	15	46	14	32	20	30
CTGGATATAAGTCCAT	ref_3247_fdr	18	5	18	16	1	18	4	14	0	14
ACGACTAATATTCTGC	ref_3247_fdr	376	70	431	435	63	376	86	373	75	350
CTAAGCCAGGAACTTC	ref_3247_fdr	568	114	745	616	112	576	97	571	116	543
CAGCCGATTGAAGTGG	ref_3247_fdr	18	4	14	20	4	23	5	16	3	17
GTTGACTTAAGCGGAA	ref_3247_fdr	2	2	17	14	4	11	2	14	1	21
TTCTAGCCCGAGAGTT	ref_3247_fdr	84	18	107	94	13	91	17	89	18	86
CTATTACTGGATGTAG	ref_3247_fdr	311	75	378	308	68	271	64	290	51	275
TTGTGCCACCCCCGTG	ref_3247_fdr	29	1	31	30	4	22	4	19	7	16
ATTGGCTCGACCGTTT	ref_3247_fdr	203	42	253	218	42	208	48	194	60	166
TGGTCCCCGCGTTCTT	ref_3247_fdr	40	14	72	66	11	42	13	46	17	49
ATCATTGTAATTATAA	ref_3247_fdr	71	18	102	95	14	61	15	84	12	85
TGGGTTCTAGAATTCT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
TCTATGAGACCGTAAT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GATTTCCTGGAAGACG	ref_3247_fdr	81	9	95	82	12	101	18	89	17	76
CGACTTTAGAGATGGG	ref_3247_fdr	178	36	212	168	41	179	25	181	35	135
TTACACACTTATCACT	ref_3247_fdr	301	43	311	287	42	265	65	275	50	217
ACTTAGTTGCACTTTG	ref_3247_fdr	530	115	666	552	114	519	109	518	133	485
GTACTCCTATCAATTA	ref_3247_fdr	35	3	44	43	7	40	6	27	4	32
ACAGTGGAACCGTTGA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
ATAAATCCTAGGTTTG	ref_3247_fdr	115	28	152	133	27	105	28	125	23	94
AATGGACAGGTTCTTG	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCATCCTCCCCCC	ref_3247_fdr	59	22	112	106	26	88	18	95	12	85
GGCAGGCTATGGTTTG	ref_3247_fdr	1	0	0	5	0	3	0	0	0	0
TGTCGTAGTCCATAAG	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGGCGCTTATATC	ref_3247_fdr	52	9	67	64	4	51	9	55	15	44
GGCCTTTTGGCTTTCA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTGTATTTACGTT	ref_3247_fdr	119	27	142	182	22	161	24	140	23	127
CGTTGCAGATTCCTTA	ref_3247_fdr	46	7	57	58	10	45	10	64	10	48
GAATAACAGCACGGCT	ref_3247_fdr	84	23	135	136	18	117	27	104	38	100
TTCGATTGACTCCTGC	ref_3247_fdr	51	11	42	43	9	36	4	32	10	33
CGTCACAAGTCTGTTT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCTAGCTAATGAG	ref_3247_fdr	237	40	239	265	34	210	47	218	50	187
TCGGTGTCGAGCACCG	ref_3247_fdr	249	51	288	258	51	184	57	257	84	208
CGCAAGGGCACCTCAA	ref_3247_fdr	148	41	214	159	29	165	26	175	29	153
GGATGGCCTATGTTAT	ref_3247_fdr	143	27	151	155	26	133	19	126	18	123
TCGATACCATCTGGAA	ref_3247_fdr	230	46	270	260	46	192	53	243	49	231
GCCTTTTTATTCTAAC	ref_3247_fdr	86	7	122	96	22	83	22	94	17	91
TCTTGCAGTCCAGGGG	ref_3247_fdr	175	35	208	177	36	186	27	174	41	159
GCAAATTGGTTTAGCA	ref_3247_fdr	118	14	117	108	24	88	10	109	17	106
GGTATCGTAGATCAAC	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTATCTGGTCGGT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
AGACTCTTTAATTTTA	ref_3247_fdr	224	52	241	211	34	216	36	225	30	198
TTTTTAGTTTCTGCGA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTCCCGCCGTCCT	ref_3247_fdr	48	7	55	62	11	46	12	29	10	50
AAAGCAGGGGTGTCGC	ref_3247_fdr	303	53	402	353	51	314	42	292	41	251
TGTTAGAGCGCTCTCC	ref_3247_fdr	240	39	309	284	45	251	49	211	67	216
TCATTCGGTCTAACTT	ref_3247_fdr	16	3	30	16	3	20	1	18	3	16
TTTTGTATCAAAAGTA	ref_3247_fdr	145	26	159	157	18	145	26	137	36	112
ACGCTGCTGGAGATTT	ref_3247_fdr	172	27	161	170	35	149	24	176	33	133
TCTGTTGTGTTCTACA	ref_3247_fdr	201	38	232	206	36	191	39	176	50	167
CTCGTCGCGCAATTTA	ref_3247_fdr	85	14	115	85	19	93	12	78	13	68
AAGCCTAACCTTGCAT	ref_3247_fdr	54	10	71	80	24	49	8	80	11	58
TCGGTTTCGGTTAGCA	ref_3247_fdr	15	2	13	16	1	16	4	22	3	11
TCCACTTCTCGTCTGG	ref_3247_fdr	105	25	121	86	26	94	21	96	20	91
TACTCAACGAGTGCCA	ref_3247_fdr	45	6	62	56	10	38	8	36	11	31
GTTTTAGTTCCCAACG	ref_3247_fdr	225	52	286	241	54	216	39	187	45	174
AGCGAATTCTAGAACA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGGGTTAATTCAT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTCGGACTTTTCA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GCATTGTATTGGTTGG	ref_3247_fdr	258	53	351	275	46	205	54	257	55	254
TACCAAAAAAAGGGCA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCTGTCCTCGTA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCGCCATTTGTGC	ref_3247_fdr	210	30	267	209	40	190	32	220	48	208
GAGGTCCCCCACCATG	ref_3247_fdr	223	43	273	239	41	197	54	202	59	181
TAGATCTTAATAGATT	ref_3247_fdr	490	96	606	498	108	471	102	497	112	441
AATCCCCGGGCTGCGG	ref_3247_fdr	113	12	174	126	20	114	21	128	17	94
TGGTGTATGTTAGGGT	ref_3247_fdr	116	20	155	119	23	118	21	118	33	86
GAGGTACCATGAACCA	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
AGTAGAATCCAACACG	ref_3247_fdr	190	33	237	206	31	199	46	203	33	191
CAGTTCTTCGTACCCG	ref_3247_fdr	1210	247	1508	1328	228	1094	239	1109	246	1129
TAAGAGTGAGTATTGC	ref_3247_fdr	431	108	574	529	85	453	105	484	108	382
GGTCATGGCCGGCCTC	ref_3247_fdr	199	29	272	225	35	202	34	165	40	170
CTTGCGAGGGCTCTAC	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTACCGGGTTGG	ref_3247_fdr	186	31	264	218	45	210	54	186	50	198
CGTGCTTGTTTTTATT	ref_3247_fdr	72	13	76	75	17	62	10	71	14	73
TCGCGGACTACCGCTC	ref_3247_fdr	66	9	75	63	13	45	14	69	5	60
GCCCTACGACCTTTCA	ref_3247_fdr	380	84	489	384	92	353	83	394	110	334
GTAGCCGCATAAATCG	ref_3247_fdr	117	20	120	112	28	98	16	94	18	91
TTCAAGGGCCACTGAT	ref_3247_fdr	12	2	6	16	3	7	2	15	1	9
ATCGCCAGGCGCGCCC	ref_3247_fdr	139	14	153	148	29	104	26	118	21	136
TCCGGGTCATTGTTAT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCAAGCTAAGGGC	ref_3247_fdr	0	0	0	0	0	0	0	1	0	1
AAGCTAGGGGCCATCT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CACTCCACCCTAGGTA	ref_3247_fdr	6	12	11	9	25	7	26	12	23	12
CTTACAGCACTGCTTA	ref_3247_fdr	99	24	140	121	34	81	16	95	38	101
TACCCTATTCCGGTTT	ref_3247_fdr	284	48	357	295	44	267	50	211	51	272
ATCTGATCAATTCGGG	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTATATTATGTAC	ref_3247_fdr	56	9	80	74	13	57	19	58	13	59
TCCATGACGTCTCCTC	ref_3247_fdr	3	1	7	1	2	3	3	7	1	5
CCTGTTATTTCTTTGT	ref_3247_fdr	0	0	0	0	0	0	0	0	0	0
CAAGCTCTGTAATCTC	ref_3247_fdr	107	18	117	102	23	86	11	91	21	96
ACGCCGCAAGTTTGTT	ref_3247_fdr	58	3	58	57	10	63	8	39	15	34
AGCAAGGTCCCTGGCT	ref_3247_fdr	103	24	147	138	21	139	14	118	20	124
TGCCAGGCTATGGTTG	ref_3247_fdr	132	36	171	164	31	117	29	150	34	103
ATAAACTTCGTCATTC	ref_3247_fdr	299	75	361	310	56	308	74	289	50	261
CTTACCGCCTCGGTAA	ref_3247_fdr	56	28	71	52	28	58	38	52	39	45
CTATCTGGGTATTCAC	ref_3247_fdr	524	86	610	554	97	491	109	505	102	484
GTAGGAACCGTGGTGC	ref_3247_fdr	56	18	35	42	8	33	12	39	17	45
CTTGAAGGGTCCCCAT	ref_3247_fdr	23	22	26	24	35	31	35	25	25	19
ATCCTTTGCTATTGTT	ref_3247_fdr	34	14	29	49	12	32	6	47	7	33
AACGAACGAATGTAAC	ref_3247_fdr	281	62	380	317	58	245	33	258	54	268
GGCATTCCGTTACTTT	ref_3247_fdr	437	77	557	459	91	388	87	406	81	407
GACATCGTTTTGGCCC	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
ACTCCACTATCGCCGG	ref_2569_negative	8	36	15	16	41	9	37	10	33	13
TCGTTGCTTGCGGCAA	ref_2569_negative	20	24	16	16	33	12	27	13	44	9
CACTTTGGAAGGAGGC	ref_2569_negative	5	19	1	4	6	2	10	2	11	2
ATCTGATGCTGGGTTA	ref_2569_negative	47	61	42	35	75	49	93	37	73	36
CCTACGCGAATTGCTC	ref_2569_negative	15	11	13	5	15	5	16	5	8	7
TACTCGCTCAATTACT	ref_2569_negative	17	37	17	11	35	12	30	22	26	12
ATATCTGACAGCCTCT	ref_2569_negative	16	24	16	7	31	9	42	17	34	19
TGCATAGCAATGCTTA	ref_2569_negative	0	0	0	1	0	0	0	0	0	0
TGATCTATACGTGCGG	ref_2569_negative	15	40	20	12	42	13	38	14	44	15
CCAGAAAGTCAATCCT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CCAGCTTCAAATCTGG	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CCAAAAGTCGCAGGTC	ref_2569_negative	12	15	9	7	24	10	14	11	16	4
CTTGGTCAGACTATGT	ref_2569_negative	43	50	38	21	58	30	77	31	69	23
ACCCAATCAAGGGCTG	ref_2569_negative	20	54	26	20	46	16	46	27	49	17
TCCCATGGGCTGGTTT	ref_2569_negative	23	46	12	14	26	9	45	12	44	15
CGCCATGTGCCTATCC	ref_2569_negative	48	106	79	59	137	53	135	70	134	46
CTGCTCTATAGGCCGT	ref_2569_negative	5	5	4	3	15	4	5	5	16	2
ACTTACCATCATGGAC	ref_2569_negative	8	32	9	8	48	10	62	9	59	4
GCCCCCACCCCGCGAT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CAACGACATTATAAGG	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
GATAAGCTCTATGTTC	ref_2569_negative	3	7	8	3	6	2	10	7	5	7
ACCAGCGCAATCTCGT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CTCCGTGCTCTAGTTT	ref_2569_negative	5	2	2	2	5	4	6	9	5	0
TACACTTTCAAGCTCT	ref_2569_negative	113	214	167	123	218	137	217	104	256	116
TACCCCGGCGAAAGCA	ref_2569_negative	23	52	23	28	59	17	54	17	49	23
GTGCTTCTGAGCCGCA	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
AGTGCGTATACGTCAC	ref_2569_negative	13	36	13	18	37	14	36	15	41	12
GTCCGAGGTACCCTCG	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CAATGCCTTCTTTGTA	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TTCGCGTCCCAAGTCA	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TCCGCGTACCTCCCGT	ref_2569_negative	6	12	2	4	7	3	7	4	17	1
TTACGGTGAAGCATCC	ref_2569_negative	55	63	60	39	68	40	77	36	83	32
GGCTTCATCTAGTAGG	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
ATGGATTTCATTCCGA	ref_2569_negative	6	10	10	8	16	9	7	10	5	6
TTGCTTCCTGCCGCAC	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CAATCACTATTCGGCT	ref_2569_negative	50	92	62	42	105	54	82	45	87	35
CCGCTTCTGCTGATAA	ref_2569_negative	21	29	16	21	38	18	21	19	39	22
CTCCGTGAAATTCTTT	ref_2569_negative	28	38	20	31	37	22	37	27	36	27
CTTAGGCTCATGTCTT	ref_2569_negative	8	24	14	8	21	14	21	13	21	10
CTTTACTGTCGTCTGG	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CATGTCATTCGAGGAT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TCCGTTACATTACCTT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CTATAGAAATTTCGGA	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CAACCCGGCTCATCTT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
GTGTTCTCAGTTATCT	ref_2569_negative	1	3	2	6	8	0	5	1	5	5
CAATCCGTGCGTATCC	ref_2569_negative	4	6	5	6	12	4	15	4	7	5
TGTTGTTATCTAGATT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CTTGTTAAGTCGTTTT	ref_2569_negative	26	47	28	21	40	21	36	22	40	18
GGACTTACCTTTCCTT	ref_2569_negative	3	37	1	9	36	0	25	3	26	2
CGTTATTTTTACTCGA	ref_2569_negative	9	17	13	13	23	5	15	6	17	8
ACTCACTACGAAGGCG	ref_2569_negative	28	32	31	29	38	20	42	23	50	23
CACTTGTATATGTTCG	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TGTTATAGTGGCTCGA	ref_2569_negative	11	20	12	7	17	6	17	10	18	10
GCACCGTCAGTGCAGG	ref_2569_negative	18	49	29	27	47	21	48	20	72	26
ATATGTTTATGCATGG	ref_2569_negative	10	11	10	11	23	12	15	5	20	11
GAACGTTTACACTTTG	ref_2569_negative	7	13	11	14	21	12	24	5	18	9
TACTACAAACCATTTT	ref_2569_negative	11	26	9	16	32	15	31	14	33	12
ATGAAGCACTTTACTC	ref_2569_negative	24	29	16	14	28	16	33	22	48	16
TTTGGCAAGTCAATAT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
AGTGGGGCAAGAAGTC	ref_2569_negative	5	16	6	5	10	7	16	5	12	9
CTTGCTTTTGCGTTAC	ref_2569_negative	12	27	25	19	39	17	58	11	36	16
ATGATTGCCTGACGTC	ref_2569_negative	76	162	106	94	163	77	178	67	175	82
GTTGGCTGGACTTTAC	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
GGATCAATTTTGGTCC	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
AATGATCCGCTAAGCT	ref_2569_negative	16	30	15	10	25	10	30	14	23	15
AGATCTGAACTGGGGA	ref_2569_negative	6	11	9	7	15	9	8	4	10	4
CGCTTAGAAGGTTCGT	ref_2569_negative	21	31	30	21	52	23	31	21	45	14
CTTTGTAACAGGTTTA	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TGGCTCGCAGGGTGGT	ref_2569_negative	17	33	22	15	27	20	44	23	42	21
CGCTACATCTAAACAG	ref_2569_negative	12	10	12	7	10	7	8	12	27	5
GTAATGGGTGGTTCTT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TATTCAGCATTGGACC	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CCTCTGAATACCTTAT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CATCAGTGCTATCTTC	ref_2569_negative	43	55	31	27	41	19	68	23	61	29
CAGGGTACTTCTGAGC	ref_2569_negative	0	0	0	0	0	0	1	0	2	1
TAGAGTAAAATTTCTT	ref_2569_negative	21	30	15	17	35	17	31	11	39	9
CCCCACACACCAGCAT	ref_2569_negative	8	13	7	11	20	8	18	10	16	12
GACGATATATGAGTCT	ref_2569_negative	48	109	63	49	101	60	93	33	93	43
GATGAGCAGTCCTCTG	ref_2569_negative	7	8	8	4	12	9	15	12	18	5
TCATGCATCCATATTA	ref_2569_negative	6	8	6	6	16	6	19	8	7	6
TCGTAAGGAATTAGAT	ref_2569_negative	9	19	10	4	8	15	14	9	21	13
GTTAAAGGTGTATTAC	ref_2569_negative	35	70	49	43	86	28	65	28	76	27
ACTATTGCCTCCTAGT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
AGGTCGATTGATTGTT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
GAACCAGAGGCTGCGT	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
ACGGCCTTTAACCACT	ref_2569_negative	6	18	6	5	15	6	13	4	11	4
TTACATATTTCATAGC	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TCCCACGGTTTTTTTC	ref_2569_negative	4	10	3	1	10	7	9	2	5	3
GTTTGAAAACTGGCAA	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CGGGTTAGATATCTCA	ref_2569_negative	2	5	2	1	2	3	4	0	5	0
CATGTCCTTAATCCAT	ref_2569_negative	35	42	34	34	53	44	57	28	73	49
CCCAACAGGAGGATGA	ref_2569_negative	31	47	26	23	35	26	39	22	39	23
ACTAGCAATCGGAAGA	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
ATAGGCTGTTTCTAAC	ref_2569_negative	8	16	5	7	21	7	8	10	17	6
GGGCCGTTAATTCCCA	ref_2569_negative	20	19	10	9	22	14	27	12	22	7
CAAGAGCAACTGTCCT	ref_2569_negative	100	170	151	110	194	97	202	125	193	90
GTATGCTACTTTCATA	ref_2569_negative	21	21	28	15	31	23	30	22	39	17
AGGCGCGGAACGAAGT	ref_2569_negative	12	17	20	13	23	16	32	12	19	9
CCGCATCATGAGATCA	ref_2569_negative	33	53	32	27	62	28	55	27	56	35
TGCAGCCCTTACCCGG	ref_2569_negative	11	14	11	11	21	3	20	7	18	13
CTGACTCCAAATTAGT	ref_2569_negative	49	110	57	48	99	51	92	46	112	42
CGCTTTGCATACCCGG	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
CTCTTGAGCACGCTCA	ref_2569_negative	79	143	99	76	103	84	180	70	130	43
CTTTCCTTTTGCGCGA	ref_2569_negative	6	2	3	1	4	1	5	3	4	5
CGGCTCCTATGCATTG	ref_2569_negative	10	8	6	3	11	6	15	10	13	5
TCGCACACACGCTATG	ref_2569_negative	4	5	2	5	5	1	6	3	6	3
GTAGAACGGAAATGAC	ref_2569_negative	3	6	2	1	5	4	2	1	4	1
TGTATCTAGTTTGTAC	ref_2569_negative	0	2	0	0	1	0	0	0	0	0
GACCTCTCCTTTTCAC	ref_2569_negative	0	0	0	0	0	0	0	0	0	0
TACCTTGCTGCCACCG	ref_2569_negative	2	19	9	6	13	5	14	6	15	13
ATCAACCTCCTATCGC	ref_2569_negative	8	22	22	10	32	9	26	5	25	7
AATAAGGTCAGGAGCG	alt_6125_new	6	2	5	7	4	6	4	5	2	1
TATGCTTAGCGCGCAC	alt_6125_new	5	8	5	3	11	8	11	6	14	7
AGGTGGTTGTACATGT	alt_6125_new	13	21	6	17	20	16	16	12	22	4
GTTTATCTTACGGCAT	alt_6125_new	12	19	24	17	8	15	10	13	8	12
TATGTCGCTTAGTTCA	alt_6125_new	2	2	4	0	6	4	1	3	4	4
AACTGGCCACTAGAGG	alt_6125_new	13	13	10	8	19	6	11	8	21	7
CTTTCACTGTTCGGTC	alt_6125_new	8	18	14	6	9	10	8	6	15	6
CAGAGCAGGGTCGCGT	alt_6125_new	22	35	27	28	36	31	34	28	50	31
GGCTGTGCCTATTATG	alt_6125_new	15	11	10	15	8	11	16	12	18	10
GACGTTGCGAAATGCC	alt_6125_new	3	8	3	9	4	5	8	6	3	4
CCATTTTGTCATTGTG	alt_6125_new	4	4	0	2	6	1	5	1	4	3
CCCGCATTTTTATGCT	alt_6125_new	13	25	18	21	25	20	36	15	39	13
TCCCCGGAACCTATAC	alt_6125_new	5	13	1	2	4	1	8	4	7	0
CCTGAGGTGGTCTGAT	alt_6125_new	12	18	11	10	9	10	18	4	15	3
CCGGCAGGATTAATAT	alt_6125_new	0	0	0	0	0	0	0	0	0	0
CGGTGCATTGACTGGT	alt_6125_new	11	15	19	7	19	12	18	12	18	20
TTAGTATTCCAGTGCG	alt_6125_new	0	0	0	0	0	0	0	0	0	0
CAAAGGACCTATTTTA	alt_6125_new	0	0	0	0	0	0	0	0	0	0
TATGACGTGCCGGGAG	alt_6125_new	0	0	0	0	0	0	0	0	0	0
TTACGTCCATTTAATT	alt_6125_new	0	0	0	0	0	0	0	0	0	0
GTGTACATTCATGCTT	alt_6125_new	18	12	16	18	22	11	20	9	5	16
TGCGCTCGAGGGTGTG	alt_6125_new	12	25	27	22	34	20	35	20	26	14
CTGCGTTTGTCCTCTG	alt_6125_new	19	16	18	17	10	14	17	7	12	19
ATCAGTATCGACCCAG	alt_6125_new	0	0	0	0	0	0	0	0	0	0
TTGTGTTATTTATTTC	alt_6125_new	6	4	7	14	3	5	8	9	8	3
CTCGGCTTCTACATGC	alt_6125_new	21	44	37	38	31	28	38	35	33	19
ATATGGTTGTTAGCCG	alt_6125_new	5	2	7	3	7	3	3	7	3	1
TTTATCTGCACACTGC	alt_6125_new	4	7	7	6	3	1	8	6	6	0
GAGAGTCTGTGTAATT	alt_6125_new	12	6	7	4	9	9	12	5	6	10
TATCCAATCAATGGAT	alt_6125_new	4	5	5	4	3	3	3	1	2	3
ATCAACTTACCGCTTC	alt_6125_new	1	4	6	3	3	2	9	3	8	3
GTTAACACCACGCGTC	alt_6125_new	13	8	11	11	11	7	13	8	17	11
GTGCCATATTACCCCC	alt_6125_new	2	1	0	1	1	1	1	0	5	0
TTTCTTTTAAATGGTG	alt_6125_new	20	17	15	10	22	14	17	9	13	12
GTTGTTCAGAGTGGGG	alt_6125_new	2	1	2	4	3	0	3	1	6	1
CGCGGTCGCATATCCT	alt_6125_new	12	14	9	6	8	10	9	10	7	16
TTCCTGCATTGAATTT	alt_6125_new	0	0	0	0	0	0	0	0	0	0
TTATCGTCGGGAAGAC	alt_6125_new	20	19	27	21	30	26	29	16	28	25
CAGATTTGACCCCTGA	alt_6125_new	0	0	0	0	0	0	0	0	0	0
CTATCACCCCAAAAGC	alt_5114_RC	96	76	143	127	74	104	79	89	61	86
GACTCAGTTTTCATGC	alt_5114_RC	37	28	57	30	21	38	24	32	27	31
GTACGTTAGGATCATG	alt_5114_RC	8	13	20	12	6	14	15	22	4	6
GCCCCAGCAGATTTCT	alt_5114_RC	61	24	73	57	40	54	27	58	16	37
CTCTGCGTAAAATTTG	alt_5114_RC	29	46	34	34	20	24	25	22	30	28
ACAAAAAACGTGGTAG	alt_5114_RC	819	487	1013	836	566	751	561	785	534	703
CGTTACCTTCGTTGGT	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
TGAACAGCCAACTATT	alt_5114_RC	27	45	67	43	39	52	37	41	42	41
CGGGCAAATTGGATTC	alt_5114_RC	111	62	134	118	75	105	76	87	78	88
GATTACACTGTCGGCG	alt_5114_RC	5	3	5	8	3	4	5	8	5	3
TGGACCGGTTGCAGAA	alt_5114_RC	99	47	102	100	55	92	71	88	70	73
CAACATAATTGCCATA	alt_5114_RC	5	7	6	6	0	5	2	1	9	3
TCCCGAACTATGAGGC	alt_5114_RC	21	7	31	22	17	18	13	31	14	11
GGAATGGAAGTTCGGA	alt_5114_RC	146	97	205	163	100	153	105	151	105	155
AGCCGTGCAGCACCGC	alt_5114_RC	35	12	29	27	33	23	37	26	41	20
CCTTCGGTATTTGTAG	alt_5114_RC	29	21	25	25	24	14	20	26	19	23
ATTCCTCTGTCTTAAA	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
ATGTGTTGATGAACGC	alt_5114_RC	128	108	170	133	88	139	117	149	115	128
TGTCCCGGTCCAGCTG	alt_5114_RC	89	55	83	71	52	91	56	68	55	62
TGTGGCTGATGAGTTA	alt_5114_RC	87	58	118	101	83	88	69	82	68	91
TTGTAATAGATTACGC	alt_5114_RC	19	29	29	20	22	19	22	17	26	20
TGGGACCACAGCGCTG	alt_5114_RC	47	26	54	53	38	42	38	45	25	39
AATACAAGGGCAGGTG	alt_5114_RC	16	10	21	25	6	18	12	9	13	13
TGACCTTTTGGTTGCC	alt_5114_RC	60	29	56	49	39	51	43	65	51	41
AACGGTTTGCCGTTTC	alt_5114_RC	8	7	14	14	3	10	11	12	9	11
TAGGACGGCCGTTTAT	alt_5114_RC	16	17	18	21	20	22	7	18	7	14
TCCATGCGGGGTCGTC	alt_5114_RC	30	18	31	31	32	39	21	29	25	40
ATTACTTAACGATTGT	alt_5114_RC	3	3	10	5	5	5	1	5	2	5
ATCAATGGTAGCGTCA	alt_5114_RC	36	14	29	32	16	31	21	28	20	40
CCGCCTTACTTCGTCT	alt_5114_RC	43	28	59	54	34	46	21	53	29	38
TAGTCAAAATACTTCG	alt_5114_RC	64	48	77	66	35	47	38	71	54	56
TGTCGGTGTGTTCACC	alt_5114_RC	111	52	140	120	66	98	100	91	89	87
TTAGCTGCTATTTGTC	alt_5114_RC	92	53	106	119	91	93	81	85	74	86
ACTGACGTACTTTTAC	alt_5114_RC	65	45	71	79	74	51	70	71	73	71
GCGTCAATTCCGACTA	alt_5114_RC	29	16	33	28	15	33	24	34	17	15
CTAAAAGCTCACAGTA	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
CACTTCACACAATTAC	alt_5114_RC	58	63	56	77	43	64	49	59	49	70
GTACAATCCGATCGCG	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
GGAACTTGTCCCGTAT	alt_5114_RC	138	67	164	130	66	120	78	108	88	105
CTATCAATCTTGATGG	alt_5114_RC	70	56	83	80	69	78	63	71	44	53
CTTCCCTGCGTAGTGG	alt_5114_RC	39	29	47	33	25	32	33	24	24	26
CACTCGGTTCGGCGCG	alt_5114_RC	96	152	114	132	164	91	196	127	157	90
ACAGTACTGTGACGAG	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
GTAAGGATGCACCCCG	alt_5114_RC	53	44	72	49	37	48	48	56	50	50
AGTGCACCGTCGGCGC	alt_5114_RC	73	54	77	71	53	50	65	47	70	49
GTGGTCGGAGATGGCA	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
CTATATTCAATGCGTT	alt_5114_RC	13	9	9	11	7	12	15	9	7	22
CCCTAGATTATTAGTA	alt_5114_RC	0	0	1	1	3	0	1	0	0	0
ATTACGTGCCTCGGCA	alt_5114_RC	50	37	45	38	24	40	23	24	27	62
TATCATCTCCCCGAAT	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
GATACCGGGCGTATTT	alt_5114_RC	66	43	96	95	54	66	45	68	64	49
GGGCAGCCCCAGTCGT	alt_5114_RC	91	78	116	102	73	99	70	120	77	84
AGTTGTCTTTGGAAGC	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
TAGACTTCCGGACGCG	alt_5114_RC	129	82	149	133	85	98	72	113	77	98
CACTGCCATGACGTAT	alt_5114_RC	176	200	230	212	196	137	155	184	194	192
CGATCTTATTACGTTT	alt_5114_RC	16	17	34	24	24	31	29	22	23	30
TGTTTGCTATGGTGTG	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
GATGGAGCACTATCAA	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
TCCGAGTCTGAAGGCA	alt_5114_RC	22	20	25	34	9	21	19	23	18	18
TTATTATATGTATTCA	alt_5114_RC	163	140	207	196	104	155	130	157	117	121
ATCTAGACCGTTGGAG	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
CCCTAGCGTGTATATG	alt_5114_RC	103	84	137	115	96	86	77	122	79	101
ATCTGTAACGGCTGTA	alt_5114_RC	39	34	33	34	26	30	26	25	28	33
GGCTGGATACTGTCCT	alt_5114_RC	41	40	70	57	41	46	35	46	34	47
TTCTGTTGTTAATAGT	alt_5114_RC	22	15	24	24	13	37	21	21	18	22
ACTTGGCCATGAATGA	alt_5114_RC	76	37	71	64	49	40	39	54	49	45
CTTGCTCAAACCTTGT	alt_5114_RC	71	60	88	72	41	44	43	51	50	46
TGGCCCCAGTGCCTAA	alt_5114_RC	88	56	137	72	56	83	73	73	59	70
AGCTCTAGACGTTACA	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
AACTTCGGTTTTTGCG	ref_5114_RC	29	14	25	32	22	36	30	22	27	20
CTGAGTATCCCATGGA	alt_5114_RC	11	13	13	18	3	14	10	13	10	10
TGGCCTGGATATGATT	alt_5114_RC	46	38	76	62	40	46	33	48	44	44
TTTCAGAGTGCATGCA	alt_5114_RC	48	14	56	40	26	33	46	35	35	35
TGGCATAACCTCGGAT	alt_5114_RC	68	32	74	55	29	53	29	48	24	53
CTGTACACTTTCTATT	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
GACTTGCATCTCCGAG	alt_5114_RC	23	12	35	19	14	18	14	13	13	15
TAATCCTCTGGTTGAT	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
CGAGCATGTAACACTC	alt_5114_RC	299	165	352	300	222	249	173	272	193	267
GCCCTCGGCATTTTTT	alt_5114_RC	49	46	64	67	37	54	28	54	32	49
GATCTCAATGCTACCT	alt_5114_RC	107	61	109	93	73	82	63	91	26	65
TTTACCCGTTTGTGCA	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
CCGTGTTCGGGTGGTA	alt_5114_RC	15	23	12	4	24	6	14	2	16	10
CCCCTAGCCAAGGCAG	alt_5114_RC	28	40	34	32	30	20	25	16	39	30
GTAGAGCCGAACGCAT	alt_5114_RC	12	10	17	21	4	13	10	14	8	8
GGCCAAGCGAGGTTCA	alt_5114_RC	143	115	199	162	134	132	118	132	125	150
GATGTTTTCCTTCGGG	alt_5114_RC	101	46	115	92	66	88	62	94	78	98
TGTTTGTTATACATCT	alt_5114_RC	53	38	67	61	30	54	39	52	44	53
AACGGAATATGGTCAG	alt_5114_RC	70	58	104	110	45	65	54	53	73	69
GTTCATTTTTACATTA	alt_5114_RC	64	47	76	72	54	54	59	90	42	47
GTACGGTCGATTAGTC	ref_5114_RC	42	27	60	51	34	36	24	48	30	43
ATTGTACCAGCAAAAC	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
AGGTCATTGTAAATTA	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
AAACCGTTAGTCAACC	alt_5114_RC	23	23	19	30	19	19	26	22	17	19
AATTCACGTTTCATTC	alt_5114_RC	19	24	39	21	22	31	18	29	10	34
AGGTATTTTTGCTAGG	alt_5114_RC	0	0	0	0	0	0	0	0	0	0
CTCCTTGTCGCATTCG	alt_5114_RC	64	39	73	57	55	45	71	63	57	46
ATTTGGCTGCGTGGTA	alt_5114_RC	126	77	140	148	112	96	102	112	90	120
AGTCTACAGTTATTAG	alt_5114_RC	16	10	12	20	8	14	7	18	14	20
GGTTGACCTTCCAGGT	alt_5114_RC	112	63	101	100	71	86	56	99	94	79
GTACCTGATCACTCGG	alt_5114_RC	157	122	197	162	109	172	125	185	121	146
TATGTTCGGACGCTTA	alt_5114_RC	22	21	26	23	14	19	16	28	22	14
ATTTTAATACAACGCC	alt_5114_RC	32	9	40	31	11	26	17	25	20	26
CTGTGAGTTACCGAAA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CTGGATTGTTTTACAC	alt_1861_missing	0	3	2	4	6	2	2	4	8	2
CCTTAGGCGTCAGTCA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
ATTTGCGATTGTTTTA	alt_1861_missing	10	34	22	9	33	12	33	10	29	6
TCTGGCTGTCTGATTA	alt_1861_missing	3	3	13	10	13	9	3	9	7	4
TTTTGGTAGTTACTTT	alt_1861_missing	13	23	5	14	19	6	21	12	23	8
ATGCTTCGCGTGCAAT	alt_1861_missing	6	10	5	5	6	3	12	3	14	6
TTCCGGCAGGCGCCGA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
ATCCCACCTCACCTTG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CCATCGTTGCATTGTG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TTGAACAAGTGCCGAG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
AACTGGGTATCCTCTT	alt_1861_missing	8	25	7	16	21	11	15	15	20	14
CCATACCATCTATCTA	alt_1861_missing	2	4	1	1	6	6	10	3	6	3
TTTCTGGGATCTCGCA	alt_1861_missing	6	10	5	5	8	7	14	4	7	1
GAACTATGGATCGTTT	alt_1861_missing	15	35	14	12	26	12	33	10	35	13
TATTATGAGTCAGTTT	alt_1861_missing	14	33	27	13	41	24	37	19	39	25
TTAGCTAGGCTATGCT	alt_1861_missing	1	6	10	3	9	2	6	3	14	4
CACTCGATCGTGCGAT	alt_1861_missing	7	25	9	19	43	9	37	19	32	19
ACATTTTGCCGATCCG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CACATTGCTACTTTCC	alt_1861_missing	31	52	18	23	50	18	51	27	56	27
ATGTGCTCGGTTGTCT	alt_1861_missing	0	1	0	2	1	0	4	1	1	1
TGTGCCGTGACCAGGG	alt_1861_missing	9	16	9	9	15	11	19	7	16	9
GTCGACTTATGTGTCC	alt_1861_missing	5	23	12	12	32	8	28	5	36	19
GTAGACAGCTGGCGCA	alt_1861_missing	2	11	12	6	6	7	9	5	9	9
TTCTTTCGCTCGGAAT	alt_1861_missing	3	5	2	5	6	4	7	3	14	1
TACTTAAGCCTCCATA	alt_1861_missing	4	10	3	1	3	8	8	2	4	8
TTTATGGTGCGTCATT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
ATGCATCTGACGATCG	alt_1861_missing	27	51	21	14	35	19	29	19	25	16
GTGTTACCGCATGAGT	alt_1861_missing	11	43	39	19	51	22	44	17	37	24
CCTCCACTGCACTACT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GCAACAGCGTGGCCGT	alt_1861_missing	1	7	4	1	3	3	4	3	3	0
TCAGTTTTCCTCTGTG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CAAACTTTGGGCGGCA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CTAATGTATGATGGAT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTGCGGTGGTTT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
AGTTCATGTGGATTCG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
AGGCAAGCCTATTCAA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GCTTGGTTTGCGTATA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GTTCGGGTCGCGGCCA	alt_1861_missing	0	3	7	0	3	5	3	1	2	1
AGTCCGATATACTCAG	alt_1861_missing	0	1	0	1	0	2	1	0	2	0
TTCCTAAACGACCCTT	alt_1861_missing	13	27	19	13	23	7	19	12	27	10
ACTTATCGTTGTAGCT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GAGTACCCCGTAAAGT	alt_1861_missing	4	8	5	2	11	8	4	3	11	6
CCCCACGATATGGAAT	alt_1861_missing	2	5	2	5	16	2	7	3	6	1
GGTCCTCGCTGTGTTC	alt_1861_missing	5	8	6	9	7	10	20	10	10	14
ACGTTGTAGCGTAACT	alt_1861_missing	16	16	13	17	38	15	29	8	30	18
GTTCTTTCTGGGATGC	alt_1861_missing	1	3	7	2	2	1	4	3	2	1
CGTTTCTACCTGGAGA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TTGGACCCCTGCACTC	alt_1861_missing	10	16	7	10	12	12	16	5	14	8
TGACCTATGTGGTACG	alt_1861_missing	3	8	7	8	9	13	9	2	13	4
GTCCTGCTATAAAGTC	alt_1861_missing	6	15	7	5	7	2	18	8	14	6
TATGTCTTTGTTCGCT	alt_1861_missing	2	13	11	2	10	3	10	3	7	4
CTTCACTTAGGACCGG	alt_1861_missing	6	8	5	2	10	1	13	2	9	4
CTTCTACTTTGTACTA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CTGGAAGGTAACCTGG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CCCGGTTTGCGTCTAC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GGACGCCATAGTCGTC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
ATTGCTTCGCGATCTC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TTTATCCACTCTAGTG	alt_1861_missing	4	15	3	4	6	6	8	5	4	1
TCTCGGCATCTCTTTA	alt_1861_missing	1	7	1	2	2	1	7	0	0	3
AACTACCCGGCTAAAT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GCATTGTTTATCACCT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TGATGCTTTCACGGCT	alt_1861_missing	2	5	4	4	1	4	10	1	10	0
CTTAAGGGTCTGGGAT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
AAACTACAGGTTTTGC	alt_1861_missing	6	6	2	5	5	7	11	4	5	3
CCCGATGGAAGCGCTA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GTGCATTTAGCATACG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
AACTTGACGTGCGGGT	alt_1861_missing	3	21	3	9	10	2	11	7	10	5
CTAAGACTTATGTTCG	alt_1861_missing	3	7	4	6	5	3	5	2	9	4
CAAACCATTTCTTCTC	alt_1861_missing	12	15	12	4	11	7	28	8	21	10
ATGCCTTTGGTTCGTG	alt_1861_missing	3	8	16	7	15	13	9	4	10	9
GTTCAAATTATTTAAA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GTATGTGATTAAGTTG	ref_1861_missing	12	29	18	19	31	20	36	9	49	9
TAATTGGCGTAGTTTA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TTAGGGGCTGTTGAGC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GTATTTAACTTCTGGA	alt_1861_missing	22	34	22	18	30	19	31	14	53	31
GGGCCAATCGATACGT	alt_1861_missing	4	4	4	5	8	5	4	1	10	0
GACATCATTGGACCTT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CGAGGATATGGACACC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
ATGTTCGCTAGCCGCC	alt_1861_missing	2	7	0	0	5	1	8	4	7	4
TCCGTATGACTCAGGA	alt_1861_missing	2	7	2	2	3	2	6	0	10	2
CCGAGGATGTTACTCT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TACAGGCCTTTATAGC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CGATTTTCATTACTTT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTCACCTTAATT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CACGTTTTGCATCGCG	alt_1861_missing	7	14	9	13	17	4	8	6	20	9
CGACTTAACTAAATTC	alt_1861_missing	27	51	34	26	69	28	47	20	71	32
GCCGAGGTTCTATCAG	alt_1861_missing	11	26	14	24	22	11	20	11	26	15
TGCCTTGGAGTGACTC	alt_1861_missing	4	6	0	7	13	4	7	4	11	1
GTCACCCACTGTTTGG	alt_1861_missing	9	12	5	9	10	5	10	8	16	3
TGCAAAACATATACAT	alt_1861_missing	3	16	8	5	11	5	8	8	14	5
ATATTTACTGCCGCGC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CTTTTAAGTTCTTCTT	alt_1861_missing	1	0	2	0	3	0	1	3	0	0
GTCAGAAGCTTTCACG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TTCACCCCATAATGGC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
AAATGGCTGATTTTCT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TACGCATTCTGAATTC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CTGACCTATCACTATC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GCAGGCCTTAAACTTC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CTTCTTGGTGAAAACG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TTACGGCTGCCCTATT	alt_1861_missing	10	7	10	7	16	12	17	8	16	16
ATCTCAAGTCAGGGCC	alt_1861_missing	17	26	11	12	26	8	21	9	32	9
TTCGATCCTGGATGGT	alt_1861_missing	1	4	2	6	14	3	8	2	12	3
TTTCATCTTGAACTCG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
ATGCATGGCTTGCAAA	alt_1861_missing	3	16	6	7	8	1	11	6	11	3
TTTCAGAATCTCTTGT	alt_1861_missing	13	32	21	14	19	13	29	24	15	8
ATCAGCATACTTGAGC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TGATTCGTGAAACGGT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TGTTATCGACCCATTA	alt_1861_missing	1	5	2	1	2	1	2	3	4	0
TAGTTGTGTGTGGGAA	alt_1861_missing	8	15	12	9	29	10	18	11	24	12
AATGCGAGCTCCCTTG	ref_1861_missing	2	11	5	4	13	1	17	8	8	2
GGGATCTTGGCCGTAG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GGTATCTTGTTGTGGC	alt_1861_missing	26	39	32	20	46	23	62	32	51	23
GCTCAGGTGTGACGCG	ref_1861_missing	9	17	5	12	18	9	20	9	14	4
TCTCAACATGGAGCGC	alt_1861_missing	21	17	18	27	17	23	20	16	13	19
TGGTGGTCTACCATTT	alt_1861_missing	7	7	10	5	9	6	21	3	14	7
ACCCCAAATGGCGACA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TCCGTGAATTGCCTTA	alt_1861_missing	12	15	2	6	11	9	19	12	16	8
CTACGTTGCTTCTGGG	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TAAACTACATTGTCTC	alt_1861_missing	5	9	6	2	10	5	11	3	11	3
ATCGCGATTGGAACCT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
ATAGAGGTCGGTCCCG	alt_1861_missing	5	3	4	2	5	1	5	2	4	2
TCTCCTCCTGTTTCAA	alt_1861_missing	2	1	1	0	2	2	5	1	3	1
GGGGGTTCTTCCTAGT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GACTTGCAAGGCATAA	alt_1861_missing	6	17	7	8	26	9	10	8	18	9
TCCGCTCCTTAGGCCT	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
GGTAATCTGCTTCGGA	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
CCACTTACCAGCCAAC	alt_1861_missing	0	0	0	0	0	0	0	0	0	0
TATACACCCTTTCAGT	alt_1861_missing	5	10	7	5	12	7	5	8	10	5
CCGGGGTGCTTCTCGT	alt_5957_new	151	35	183	172	37	127	43	121	41	137
CTTAGCGAGACCTTTC	alt_5957_new	260	73	372	267	64	283	85	241	79	258
ATCGATATTTCCGATG	alt_5957_new	115	33	153	123	36	134	33	115	44	109
GGGCTGTTGACCATGT	alt_5957_new	65	13	102	94	21	76	14	60	20	81
GTGCGTATTCCATTCT	alt_5957_new	272	67	353	225	70	237	59	220	62	227
TGGTGCCCACTTCCCA	alt_5957_new	1383	313	1566	1420	318	1270	324	1230	324	1213
CTCGCCCACGTATTAA	alt_5957_new	0	0	0	0	0	0	0	0	0	0
TCGAATGAATTTGGTT	alt_5957_new	559	186	708	639	183	570	154	561	169	549
TATCCGACAGCCATTA	alt_5957_new	37	8	38	23	10	47	12	30	7	22
GGCCCATATCTGGCAT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
ACTTGGAAATTAACGC	alt_5957_new	397	105	488	436	99	400	124	362	87	365
GATACGGTTTAGTCCT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
AGCACATGAATCTCTC	alt_5957_new	0	0	0	0	0	0	0	0	0	0
ACCTCATTGGGTTGTG	alt_5957_new	250	84	327	282	88	233	76	272	95	310
CCTACATCGGCCCGAC	alt_5957_new	92	20	108	92	31	69	26	85	21	76
GTTCCACTGCGTCCTT	alt_5957_new	93	32	91	89	24	72	22	94	17	74
GAAATATCTGCTACAA	alt_5957_new	0	0	0	0	0	0	0	0	0	0
GTACTCAGCTGAACTC	alt_5957_new	164	36	166	157	24	180	44	150	43	155
TCCATCAAGTGGTGCG	alt_5957_new	347	88	448	377	97	355	110	349	105	351
TGTACCTGGTGGTTGT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
CATCGGTATGCCTTCC	alt_5957_new	38	12	48	35	7	37	10	20	7	27
CTAAAGCGGTGTACCG	alt_5957_new	0	0	0	0	0	0	0	0	0	0
CTTTCACGTGTCGATA	alt_5957_new	300	75	360	250	79	306	77	249	61	248
CTTATGTATTGACCAC	alt_5957_new	62	17	76	53	15	55	13	61	19	52
GAGGTCTTAGCACTTG	alt_5957_new	77	35	120	88	21	90	21	75	27	69
GTAGCACATCGCTTTC	alt_5957_new	72	15	78	74	22	73	20	75	20	64
TTCTGAAGTCCAAGGA	alt_5957_new	48	15	59	41	14	54	14	41	13	57
AAGGTGGCCTCAAGGA	alt_5957_new	1987	492	2546	2105	596	1839	582	1905	597	1963
ACACGTTGCTTGCCTC	alt_5957_new	257	72	298	273	75	241	70	227	83	226
ATCCGTGTTACGTCTA	alt_5957_new	127	51	152	137	30	119	60	116	48	139
GTCGCACTGCAATAAT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
ACAGTTTCCTTTAGCA	alt_5957_new	106	30	128	143	30	127	28	99	23	130
GTTTACTGGTTCCCTG	alt_5957_new	235	73	306	249	80	241	95	220	84	274
CAGGCTCCGGGGCTAT	alt_5957_new	148	46	164	135	31	149	41	107	43	100
TTCAAGATCCGTTTCC	alt_5957_new	88	25	126	109	34	107	33	98	22	96
GGATTACCCGAGCGGC	alt_5957_new	68	16	69	57	13	51	16	47	10	48
ATTTACTAAGGGAGGA	alt_5957_new	192	37	243	205	61	193	62	200	46	183
ACCCGCTCGTTTGGAC	alt_5957_new	20	9	28	25	6	29	6	16	11	25
GGGATCTCCAACCCAT	alt_5957_new	274	69	308	244	56	222	62	201	49	202
GGGCACACTGCCGACT	alt_5957_new	133	29	182	181	36	153	35	175	33	155
CCTCGTTGGAAAGCCT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
TGGGATTTCTTACGTT	alt_5957_new	745	220	853	790	222	719	200	712	224	747
GTCTCAATAGTTACGT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
CCTGCTCACGCCGCGT	alt_5957_new	326	97	415	424	99	305	101	363	141	316
TTGTGTCCCGCCCTAA	alt_5957_new	80	24	109	138	33	88	33	84	27	106
GATTTTAGCCGACTAC	alt_5957_new	183	40	215	167	43	177	47	174	56	166
TATGTGCATGTCAACA	alt_5957_new	10	16	27	24	6	36	14	23	7	22
CGTGCAGACATGAGTG	alt_5957_new	0	0	0	0	0	0	0	0	0	0
ACATCATACTTGTTTG	alt_5957_new	69	18	99	72	23	58	14	60	25	82
CTGACCAAGCACGAAA	alt_5957_new	199	53	243	188	54	181	50	199	54	202
TTATCTCTTAAACGCT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
AGACCATTTTTGCGTC	alt_5957_new	0	0	0	0	0	0	0	0	0	0
GGAAAGTCGGGATTCC	alt_5957_new	90	37	143	113	44	79	25	82	38	83
TATTGTAATACAAGTA	alt_5957_new	8	2	6	1	7	4	7	3	7	5
TAAAGTCATCTATTGC	alt_5957_new	21	9	13	21	5	21	4	23	3	15
CTGACCTTACAATATT	alt_5957_new	108	34	107	113	22	86	40	68	20	71
CGTGGCTTATTAAGGC	alt_5957_new	47	13	63	78	14	54	16	60	12	51
TCGCGGTGTATTTTTT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
GTTATGTCGGAGCTCA	alt_5957_new	0	0	0	0	0	0	0	0	0	0
TTACTTACTTTTGTCT	alt_5957_new	28	23	24	32	19	23	23	15	19	17
TGTAGATGGCCAGGTT	alt_5957_new	87	28	121	92	30	86	30	68	41	84
AGTAGCCTGTATCGGC	alt_5957_new	0	0	1	0	0	1	0	0	0	1
GCAGCGAATCTTACTT	alt_5957_new	41	17	42	43	9	48	11	49	14	47
AATATATTGGATCACA	alt_5957_new	200	57	287	256	56	234	58	201	74	228
GTTTAATGTGTGCGCG	alt_5957_new	270	96	365	288	97	232	101	243	101	273
CCTCCTCCCAGCTAAC	alt_5957_new	12	6	9	9	10	7	11	9	8	10
CAGAGGCACCTTTAGT	alt_5957_new	187	63	261	194	74	186	85	192	70	198
GTCCTGTCGAGAATCA	alt_5957_new	158	45	184	163	46	146	38	144	42	180
CCCTCAACAACGGGGT	alt_5957_new	9	2	7	4	1	1	2	4	1	6
TACAATGCGTTCTTGA	alt_5957_new	131	27	163	124	26	123	27	112	40	124
GCATATTGATTAGCCT	alt_5957_new	0	0	0	0	0	0	0	0	0	0
CACAACCGCGTGTCCT	alt_5957_new	419	140	416	379	148	337	136	332	139	349
GCGCGATACGTCACGT	alt_5957_new	53	43	40	33	43	41	41	30	47	48
CTCAGGCTTTATTCTA	ref_5739_new	15	23	16	22	35	27	22	14	41	13
GGTTATCCTTTTACCA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GATGTTCACACTTCGC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GCGTTTTAACGACGGC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TCACAAGTTCTCACGC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TGCCACACTGATTTGG	ref_5739_new	7	17	8	9	17	10	8	9	15	10
CAGTATCTTCGTCCTT	ref_5739_new	0	1	0	3	2	0	3	3	2	1
TCTTTAGTTGGTGGCT	ref_5739_new	1	4	0	4	6	2	2	1	3	7
TTGCAAGTAGGGTGTA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GTGCGCAATGAAGGGT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CGATGCTTCATCCTAA	ref_5739_new	3	7	7	5	5	3	9	4	6	3
TGCTCCTATTGGACTG	ref_5739_new	4	2	1	1	2	5	4	0	2	2
TTTTAACATCATTTGG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CGGTATTACGTTGACC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TCCTACGTACCGCAGG	ref_5739_new	13	15	16	14	15	7	19	14	8	12
AACAACGTCTGCTAAA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGCGAGAGAGTCTTGA	ref_5739_new	14	22	25	13	11	13	24	8	20	18
TGTTACCTTCTGCAAC	ref_5739_new	62	87	83	65	94	78	113	45	115	44
TCCCCCTTATCAGAAT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CATTCCCAGTCTGCCA	ref_5739_new	32	56	56	40	45	33	50	33	54	35
TTCACTTTTTGAGCAA	ref_5739_new	42	41	37	36	33	51	35	33	53	21
CTGAACTTGTAGTTAT	ref_5739_new	75	83	88	67	76	54	98	71	89	70
CCGACCGGGACGTAGT	ref_5739_new	50	54	71	45	37	53	54	38	59	54
GCCGGTTAGTAACTAC	ref_5739_new	6	16	8	14	14	1	13	12	10	4
TGGATTTTTCCGCTGT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CGCTATTAGGTCCCTG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TCGTTCAATGTTCCTT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CACGAGTTCCGACGTC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TTGGCGGTATTCTCCG	ref_5739_new	65	71	79	75	81	72	61	72	93	49
AGCCCGCTTATATATG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TCTGTCGCTTCATATT	ref_5739_new	8	6	6	9	7	7	11	9	7	7
AAAACACCGCTGGTAA	ref_5739_new	10	13	6	7	4	5	12	4	10	7
GGTCGTTAATATCTAT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CGTTGTCCAAACACTT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TTTACAACTGACGAAA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GAGTAATTTGTGGGAG	ref_5739_new	24	25	21	22	21	24	27	17	36	15
ACTACCCCACCCAATG	ref_5739_new	26	35	41	21	42	23	36	25	49	21
GGATTCTTGTCACGGC	ref_5739_new	10	14	14	13	9	11	12	9	11	9
TGCGTAACGGCTTTAG	ref_5739_new	37	14	26	39	22	18	25	24	22	34
AACGGGTCCTGGTTAG	ref_5739_new	1	0	0	2	1	0	1	0	0	0
TTTGAATCCCAACTCG	ref_5739_new	11	8	12	12	14	10	16	14	18	7
TGGGGGCACTAAATGC	ref_5739_new	36	27	29	42	32	31	25	25	25	20
AACTATTGGCTCGTAA	ref_5739_new	31	36	30	25	47	33	28	19	34	16
GGTGTGTGAATTCTAT	ref_5739_new	0	0	0	2	1	2	3	0	4	0
TTCATTGACCGCAAGG	ref_5739_new	3	7	7	4	9	6	3	1	9	1
GTGAGGCTTACTATGG	ref_5739_new	58	77	61	54	72	44	73	47	69	60
TTTAAAATTAACTCTA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CGGAAGCCATACGTGA	ref_3640_reverse	24	33	39	25	37	32	32	24	35	29
CCCATTCCCCTGGGCC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGCTCCACTTGCGAGC	ref_5739_new	89	87	109	85	87	78	104	90	97	91
TAACGGGGGCATCCTC	ref_5739_new	10	9	10	5	6	13	8	10	10	6
ATCACGAACGCTACCA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CCCACTATAACCTTAA	ref_5739_new	21	26	18	13	32	20	20	14	23	16
ATCTTTCGGCCATTTG	ref_5739_new	66	89	85	76	80	73	86	77	75	63
AGTGCCGTTCCCACTT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CAGAGGCTTTGGAATC	ref_5739_new	28	28	37	29	35	16	31	28	26	28
ATGGCACACTGCTACC	ref_5739_new	10	7	13	7	20	4	11	11	27	12
AGACCGCTTATATATG	ref_5739_new	31	53	56	38	57	39	55	39	47	36
TTGCGCGACCTTTGTG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TGATCTGGTATCTGGT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TTCATTTTTCTTCGGG	ref_5739_new	29	23	39	23	34	26	32	28	33	14
TCCCGATGAACAGTGG	ref_5739_new	2	0	0	0	4	4	1	1	0	0
GGCGGGATTTATTTTC	ref_5739_new	41	47	65	47	44	50	49	36	61	44
TCTGATTTTTCTCAAT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CGCAATCGGCTAGTCG	ref_5739_new	89	125	79	72	116	90	119	71	115	78
TGACCTCCTAAGATCC	ref_5739_new	35	38	27	19	39	22	23	23	27	30
TTCTGCACGGGCGTAA	ref_5739_new	6	6	10	2	3	4	4	7	5	5
CTCTGCCAATGTCTTT	ref_5739_new	7	7	10	12	15	13	11	14	8	15
TCTAGGTTTACCTAGT	ref_5739_new	13	18	26	22	26	26	17	21	31	15
CCCGGGATACTGTAGA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CCGAGGGTTGTATTTG	ref_5739_new	12	11	13	7	14	10	18	6	12	6
CCTTTTTGGACGATCG	ref_5739_new	13	13	16	15	12	15	19	14	13	14
CGAACGATCTTAGCAA	ref_5739_new	34	35	35	30	32	20	46	27	44	29
TGCGTTATTTCGCGTA	ref_5739_new	17	26	14	9	9	15	21	14	20	14
AAACTCTTCGAGCGGG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TTCAGCGACGGGCTCA	ref_5739_new	39	41	44	43	45	34	48	32	44	44
CAAGGTTTGGAGTAGT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GATACCGACTCAAAGG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGTTCTCTAGTCTCTC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CGCACCGATCATGTGG	ref_5739_new	17	47	23	10	36	14	44	14	32	16
TGTTATTTATACTTTC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGGAGGGTAGTCCCAC	ref_5739_new	20	14	15	22	22	19	20	22	25	16
TTATTAATGTGCAGCA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CCGGGCCGTAACGTCT	ref_5739_new	13	18	14	15	22	13	13	12	15	16
TCCGAACCGGTGGGCG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGTCATTATATGAATA	ref_5739_new	14	20	24	26	23	12	13	13	15	11
TTCGAATGTGCGTTTG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TGGAATGGGCGCACGT	ref_5739_new	217	227	254	241	267	229	280	220	293	181
TTGCTTTGTTCGCAGG	ref_5739_new	7	10	21	13	9	14	10	17	15	8
GACCTGCCTTTTGATA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGAAGCATGTGCACAG	ref_5739_new	20	23	22	20	18	15	27	14	29	19
ATCCCGGTTTTGTATT	ref_5739_new	38	22	27	16	35	28	16	32	26	28
GCATGTTACAGTGTGG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GCTTACTAATACTTAG	ref_5739_new	47	58	72	65	59	46	68	57	74	40
GTACAAGTTACCTCTC	ref_5739_new	27	22	34	26	24	24	29	18	26	18
TGTACTGTATTCTGCG	ref_5739_new	10	10	8	15	15	14	10	13	24	12
GTCCCCCCCTGAAAAT	ref_5739_new	19	17	30	28	17	16	24	24	15	19
CTGGCAATCTCGCGGC	ref_5739_new	0	1	0	0	0	0	1	1	0	2
CTAGTAATGCATGTAT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CTCATTTAGAAATTTT	ref_5739_new	9	16	17	10	10	14	6	14	9	12
TTCTAGCGTTCAGAGA	ref_5739_new	15	12	15	20	18	12	30	15	22	16
ACCGTTGGTCCAATTT	ref_5739_new	16	30	21	24	26	15	33	27	29	17
ATAAGGTTTTTTTCAG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CATGGTAGCATCTTCT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TAAGAATTCAGACAGG	ref_5739_new	10	13	16	11	12	7	8	10	15	13
TGTGTCGAGTTTCGAG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CCGGTGCTGAGGTTTA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
ACTGATGATAGAGGGC	ref_5739_new	11	9	8	10	9	6	6	3	11	4
CGCGACAGGGTCATGC	ref_5739_new	24	31	25	33	25	27	20	17	23	16
GCCGATATTCTCATCG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGCGGGGCTCAGCCTA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CCCGGCTATTATCTGA	ref_5739_new	9	5	11	8	9	6	10	8	11	3
TGGAAGTTCTGCGGGT	ref_5739_new	16	2	13	14	10	10	11	16	14	8
TCCTGGCCAGTCCGAG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TCCTACCTGGTCGAGT	ref_5739_new	34	61	48	36	56	35	70	39	70	32
GCGATGTGTACTTACG	ref_5739_new	0	3	0	0	1	2	0	1	1	0
GTCTCAGCACTATCGC	ref_5739_new	29	28	27	31	32	23	29	27	36	12
CGTCGACGACCGTTCA	ref_5739_new	168	180	192	184	184	172	232	150	197	170
TGTCTAGAGAGTATGC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GGTTCAATGATTCGCG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
CTTATACATCGGCTAT	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GTCAGTTGGCACGGCA	ref_5739_new	22	16	18	9	5	10	15	17	11	15
TCGTTGGATTTCACCT	ref_5739_new	3	7	1	6	21	2	4	6	4	2
AATTGTTTTCAAATGT	ref_5739_new	16	10	16	16	21	15	14	17	16	3
CGTAATTGGTGCGGAG	ref_5739_new	37	51	58	41	41	54	43	34	56	39
GCTTGAATATGCGATC	ref_5739_new	0	0	0	0	0	0	0	0	0	0
AGGGAAATTAATCGCT	ref_5739_new	32	22	28	22	29	15	23	21	37	18
GATATAGTACTGCCGG	ref_5739_new	0	0	0	0	0	0	0	0	0	0
GCCTGGCGGGTGACTC	ref_5739_new	6	7	10	8	13	13	5	11	10	13
TCTATATATACGCCTT	ref_5739_new	69	65	70	55	72	37	62	50	53	51
TATTCGTGAATTCCTA	ref_5739_new	0	0	0	0	0	0	0	0	0	0
TCGGGACTGATCTACC	ref_5739_new	13	20	26	16	31	17	16	15	26	17
TTTTCAGGACCTAACT	ref_5739_new	108	113	118	101	154	97	152	110	135	87
GCGCCACGTGGTCTTC	ref_4116_upstream	12	19	14	13	16	15	29	21	25	12
ATGATAAGCGTGTGCG	ref_4116_upstream	37	70	41	26	99	29	92	19	97	30
AAGCTTGCTCGGGAGA	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
AATAACATATCACCGG	ref_4116_upstream	62	151	85	69	164	80	163	57	174	59
ATGATCTTCCCGGTTT	ref_4116_upstream	147	234	198	163	262	129	293	153	287	134
CCCCCAGGTTGCGGCA	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTCACTCCTTAGT	ref_4116_upstream	28	164	40	38	172	25	170	25	192	24
CGGTTTGGAATATGAG	ref_4116_upstream	8	9	15	2	7	5	18	9	16	9
CACCATCAAGGGTAAC	ref_4116_upstream	55	107	79	49	136	44	102	39	128	33
GGGTGCAATTTCATCA	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCTCTCCCCTTG	ref_4116_upstream	2	19	2	7	21	5	14	2	34	1
TCTGCTCGTGACTGTT	ref_4116_upstream	6	9	2	2	10	1	11	1	10	3
GGTCGAGTCCTTCGTT	ref_4116_upstream	2	14	9	8	20	8	20	10	12	10
CTAGCACAAAATTTTC	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTGATGCATCGGTGGC	ref_4116_upstream	30	72	38	36	79	42	77	25	88	29
TTCGATACCCGAGAGC	ref_4116_upstream	8	19	17	20	34	15	27	8	23	7
TGGCGCAACTATTGGG	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCGCCTTGGAGTG	ref_4116_upstream	21	44	20	18	40	21	38	12	40	14
ATTCACAGTCGCGAAT	ref_4116_upstream	9	28	16	10	37	5	38	7	39	12
TGATGATCAGTTTTAG	ref_4116_upstream	10	17	15	6	7	10	15	14	16	2
GCAGCAAGCGACGGTA	ref_4116_upstream	4	13	11	10	15	7	17	11	13	8
CAGACCACTGACTTCC	ref_4116_upstream	2	20	5	5	22	2	26	5	31	1
GCCCGGTTTCTTAGTT	ref_4116_upstream	18	68	33	13	58	16	62	19	65	20
ACTCGGGGTCAGCCAG	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCCCACACGTTA	ref_4116_upstream	3	28	17	10	38	15	28	6	28	11
GTGACTCCAGATATGA	ref_4116_upstream	33	93	59	45	68	33	93	40	106	36
GTATAGGTTCTCTAGG	ref_4116_upstream	1	10	2	1	6	1	14	3	5	5
ATTGTCGTATGGTTAC	ref_4116_upstream	1	3	1	4	6	0	5	5	4	3
GGGATATTTCTTTCAT	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTGAGAGACTCGT	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAGATCTCACATT	ref_4116_upstream	8	37	19	14	39	15	35	15	37	11
GTTTGTGAAAGGCGCC	ref_4116_upstream	8	18	22	6	19	4	21	5	29	7
AAATTACCATATTGGG	ref_4116_upstream	0	0	0	0	0	0	0	0	1	0
GTGCTCCCCGTCCCGT	ref_4116_upstream	0	22	0	2	12	0	20	0	12	0
TTCACTCCCATTGGTG	ref_4116_upstream	1	14	1	0	6	0	9	1	18	0
CCACGTTTTCCATGTT	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCCCGTCGTCTGC	ref_4116_upstream	4	37	2	3	33	5	27	3	31	5
TAAACATGAGTTATGC	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCGACCGCTTCTC	ref_4116_upstream	10	19	13	10	18	8	33	7	23	10
GATTGTGGTGATCGTG	ref_4116_upstream	78	178	81	56	198	59	205	74	202	63
GATGTTTCGGATATAC	ref_4116_upstream	50	125	79	34	147	40	135	44	119	55
CAATGACAGCGGACCA	ref_4116_upstream	40	78	34	24	72	31	70	29	72	14
AAGATCTTCCCGGTTT	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCGTAAAATTATG	ref_4116_upstream	35	58	39	28	53	29	57	29	56	37
CTATGTCAGCGAACCA	ref_4116_upstream	5	13	12	3	6	5	5	4	7	3
GCTGGTCTGTCCGTTG	ref_4116_upstream	12	27	7	7	32	12	17	6	32	10
AAATTGTGCTGCGTTG	ref_4116_upstream	5	15	5	3	14	8	4	6	14	2
TTTAGTGTGTCGTTCA	ref_4116_upstream	23	36	26	21	27	13	27	13	37	15
GGCAGGTCGGAACATT	ref_4116_upstream	29	61	25	39	52	14	71	32	70	22
TGCCTTTTGCTGAGCC	ref_4116_upstream	6	25	18	11	36	9	30	5	20	10
ATGCCTATTCAGCTTC	ref_4116_upstream	20	30	16	11	34	15	33	13	40	13
GTAGTGTGAAACAGGC	ref_4116_upstream	4	9	7	4	17	1	19	5	11	2
CCATTCCAAACGTTGC	ref_4116_upstream	1	18	1	0	23	2	19	0	13	0
AAAACCTGTATTAAGG	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTATTTGATTCGT	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGCATCTTCATGT	ref_4116_upstream	0	0	0	0	0	0	0	0	0	0
AAGAACGCAATCATTC	ref_5728_new	482	490	602	497	502	445	526	450	566	410
TCATTTCTAATTTTAA	ref_5728_new	47	37	34	51	35	42	46	45	47	25
TTTAGGTCCGAGGGAT	ref_5728_new	41	56	27	47	49	36	40	37	56	34
GCCAACAGTTTCACGG	ref_5728_new	20	36	25	26	23	23	37	26	39	21
TGACCTGTAATAGCGC	ref_5728_new	60	76	94	79	112	63	88	77	113	71
ACGGCCTGGAGATTTT	ref_5728_new	21	27	33	31	45	28	39	39	47	38
AATGGTCTTTATTTAA	ref_5728_new	9	6	11	14	9	7	12	4	9	5
AGACATTTTCGTAAGG	ref_5728_new	0	0	0	0	0	0	0	0	0	0
GCACCCGCTTAGTGTC	ref_5728_new	48	62	67	73	83	57	69	63	83	47
ATTAAGTGAGTGTGCG	ref_5728_new	17	7	23	7	20	6	12	5	27	12
CGCCTTTGGAAAGTTC	ref_5728_new	35	58	58	34	48	38	69	41	55	41
TTGCGTTTGTCTTCGT	ref_5728_new	3	0	5	1	5	5	6	1	3	1
TCGGTACTGCACATCT	ref_5728_new	64	105	98	77	96	65	102	77	106	70
TTTTGACCTCTTTGCG	ref_5728_new	44	59	73	54	56	60	67	47	52	41
CGTCTCGGTATTGGTT	ref_5728_new	9	5	6	13	11	7	9	8	9	4
CACCGCGCAGGAATCG	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TTCCAATCTTTTTCCT	ref_5728_new	45	38	30	32	35	24	28	37	38	34
ATCAACGGTTATTCCC	ref_5728_new	3	6	3	6	10	5	8	7	10	5
CAATTGCGCAGCTCTT	ref_5728_new	10	23	21	12	7	19	19	10	10	15
TACTTCGCAACTTAAG	ref_5728_new	20	21	20	16	34	30	33	19	23	15
GTACCTGAGGTGCTAT	ref_5728_new	0	0	0	0	0	0	0	0	0	0
CTACGTCTGGATCTGC	ref_5728_new	32	25	37	25	27	28	22	21	17	12
CTGGGATGCTTGCTTT	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TCGAGCGGGTTTTTTA	ref_5728_new	10	12	17	12	12	8	14	10	13	13
GGCTAAGTATCCCCAG	ref_5728_new	24	22	18	15	25	18	35	19	18	17
TTTGTGATCCCCACAT	ref_5728_new	4	7	15	9	9	7	3	12	10	7
GGTAAATAGTTTTTCA	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TATGGTAAATTGTCTA	ref_5728_new	25	31	36	26	38	26	36	17	37	36
GTTGCTATGGAATGGA	ref_5728_new	1	1	4	1	0	3	2	3	0	0
ATCTCTTAGCCACCTT	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TCTCTACTACATATTA	ref_5728_new	294	263	265	287	319	235	296	216	328	237
ATCAGGGCTTTCATTC	ref_5728_new	0	0	0	0	0	0	0	0	0	0
CACTTGCAAGCGGTAG	ref_5728_new	13	13	9	8	9	16	23	18	13	9
GGTGGTGGATCGTTCA	ref_5728_new	18	28	19	19	27	27	20	14	30	19
AGTGCTATCACCACCT	ref_5728_new	105	80	139	96	121	97	104	78	106	95
CGTTCTTAGTTAGTCA	ref_5728_new	48	78	64	48	91	63	61	46	71	45
CGGGATTGACCCAATT	ref_5728_new	58	59	64	44	37	40	54	41	63	41
ATGATATTGGTGCGAT	ref_5728_new	24	18	32	26	28	16	23	13	30	27
TGTATTTCCACCGCAC	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TGGTCGCCTTTAACAG	ref_5728_new	30	46	35	41	48	31	40	30	46	29
TAGGATACTACTCGTG	ref_5728_new	16	8	14	12	11	6	10	2	12	8
CCTGCTCATATCATGT	ref_5728_new	32	47	24	31	50	26	52	37	71	35
ATATAACAAAAATCAC	ref_5728_new	11	7	13	15	12	10	17	4	10	14
GAATTTCTGATCGGTA	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TCCTGTTCCTTCGTTT	ref_5728_new	0	0	0	0	0	0	0	0	0	0
CCATCCAACACTGGGT	ref_5728_new	10	14	15	10	7	6	14	14	13	12
CTGTTATAGGTGCGTT	ref_5728_new	38	40	50	52	46	38	42	36	52	29
CCAATGCATGGATACC	ref_5728_new	40	122	42	52	108	36	97	43	96	51
ACGGTTTCAGACAATG	ref_5728_new	33	42	41	34	32	40	50	15	56	17
ATCACGCTGTCACATC	ref_5728_new	75	99	83	75	75	82	92	82	104	65
CTCCGATCCAGTACTT	ref_5728_new	15	33	24	13	40	20	31	17	33	6
GACGTAGATCCCAGCC	ref_5728_new	0	0	0	0	0	0	0	0	0	0
CGAATAAAATCGGTTT	ref_5728_new	8	13	20	19	10	6	18	14	11	10
TACATAGACTCGGGTG	ref_5728_new	214	190	228	158	225	175	221	189	208	212
TCCTTGGGGTGGAATT	ref_5728_new	88	98	117	96	89	102	117	86	121	85
AACGATCGTAACGGAC	ref_5728_new	48	36	47	35	41	35	51	41	59	40
AACTTACCCTGACCCA	ref_5728_new	7	4	4	3	3	3	4	3	6	4
TTCAGGAATCTCTTCG	ref_5728_new	0	0	0	0	0	0	0	0	0	0
CAAGTATTCTGAAATT	ref_5728_new	52	46	62	39	57	45	68	51	51	57
ACGCTTGTCTCCAGGA	ref_5728_new	9	10	11	15	17	16	14	8	16	5
CAAGCCACTAACAAAT	ref_5728_new	2	8	10	6	12	4	23	2	17	2
TCTCTTTCAGAGAAAG	ref_5728_new	3	4	2	2	2	1	6	1	1	5
TTGAATAGTATCTTCA	ref_5728_new	24	31	51	32	34	34	31	33	31	20
TACTCTTTGGCGGTAC	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TGCTATGCGTTTATAC	ref_5728_new	78	83	64	72	82	57	76	62	73	68
GTTGTCGCAGATATAT	ref_5728_new	21	19	24	21	27	15	20	21	23	12
GTTCCCCCATTAGTTT	ref_5728_new	1	5	1	4	8	3	4	2	4	2
CAACACGCGGGCTTGC	ref_5728_new	67	50	66	54	64	65	57	42	63	39
TCTTCTGGCAAGACAA	ref_5728_new	7	11	19	19	7	11	15	15	27	18
GCAGTAGCGTTTCGAT	ref_5728_new	0	0	0	0	0	0	0	0	0	0
AGTCCGTGTTGCTTCC	ref_5728_new	15	14	20	27	14	19	24	15	29	18
GGGCCTTATTTAGTAA	ref_5728_new	21	30	29	23	26	15	26	17	37	19
ACTGTCATACTGCGTT	ref_5728_new	7	6	1	1	8	4	9	3	7	1
TGGGATGGAGCTATCG	ref_5728_new	19	21	19	25	18	6	25	9	21	9
TGCTACACTGTTCTTT	ref_5728_new	16	30	8	23	27	18	22	11	35	14
CACTAAGTAGCTGCGC	ref_5728_new	194	264	264	189	250	220	273	192	245	202
ACTCAGTGGTTTACTT	ref_5728_new	1	4	2	1	2	3	3	2	4	1
TTTTCTTATTTGGATA	ref_5728_new	25	24	21	17	25	15	25	29	10	18
TGAATCCCCGTCTTCT	ref_5728_new	12	38	11	12	59	10	55	12	54	12
TGAGCGCAAGGGTTAT	ref_5728_new	0	0	0	0	0	0	0	0	0	0
ATTGATTATTCTCCTG	ref_5728_new	71	70	77	77	71	63	76	62	79	64
AAGTACCGCACGCTTT	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TTATAAGTTCGCGGAG	ref_5728_new	0	0	0	0	0	0	0	0	0	0
GTATTTCTGATCGGTA	ref_5728_new	97	118	94	88	122	64	114	85	110	70
TAGCCATTAAGCTCGC	ref_5728_new	156	143	199	168	155	153	146	162	131	153
GCATGTAAGCTGTGTG	ref_5728_new	0	0	0	0	0	0	0	0	0	0
CTATCGCCGGCCCTCC	ref_5728_new	0	0	0	0	0	0	0	0	0	0
TCCTGGAGACCTTTCT	ref_5728_new	4	8	7	3	5	1	5	3	4	2
TGTTCTTTGAGCAACA	alt_516_RC	20	40	25	24	36	18	32	16	58	17
ATTCATTTCATGGTTA	alt_516_RC	0	0	0	0	0	0	0	0	0	0
GATCTCCTCTCACCAT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
ATTCAAAATCAGTGGC	alt_516_RC	38	71	52	44	65	40	74	35	86	44
AATTGCCCTGATTGTC	alt_516_RC	132	221	143	126	267	123	237	118	278	145
ATCCTTTCCTTGGGCC	alt_516_RC	39	53	45	21	61	19	73	36	64	36
CCTAAACTGCAGTCGA	alt_516_RC	16	33	20	15	43	26	35	20	44	13
GGTCCGAGGGTCGTTA	alt_516_RC	39	54	46	47	69	36	75	40	60	37
TACTGTTCGTTTCTGC	alt_516_RC	4	5	3	1	4	2	7	3	3	6
TCTCCTCGCAGTTTCT	alt_516_RC	23	35	19	24	34	20	33	16	53	12
GTGGCTATCTATGATT	alt_516_RC	7	13	6	7	8	7	11	6	17	11
TCTCGTGTATCGATGT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
GGGCGATGGACTCTGG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CGTCTGATTACAGTTC	alt_516_RC	44	82	38	30	79	38	91	44	77	29
ATTATAGCCGCCCTCA	alt_516_RC	11	44	17	15	39	17	47	29	47	18
TTTCTGGGAAGGTTAT	alt_516_RC	34	62	37	32	64	33	64	39	82	33
ACGACTCCATAGGCTT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CCTGACGCAGTTCTTG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
ACATCGTATCAATGGC	alt_516_RC	24	44	48	28	60	30	56	22	56	23
CACGGCAACAGGATCG	alt_516_RC	6	8	7	4	7	2	14	1	2	2
GTCCAAAGGTTTCGTG	alt_516_RC	15	23	13	3	23	12	26	12	25	10
GTGTCGGGTTCATAGT	alt_516_RC	2	6	2	3	8	0	2	1	2	2
ATATAGTCGAACGGAA	alt_516_RC	20	40	32	29	34	30	47	22	42	27
TGGGCTCCCTTCCTGA	alt_516_RC	9	24	13	17	11	16	22	10	30	6
CGCTCAAGGTGGAAGA	alt_516_RC	176	290	197	207	293	176	269	149	277	162
ATCAAGAATGTGTCTA	alt_516_RC	46	82	28	39	76	43	92	41	113	40
GACCCAAGAGTTGTCT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
ACTTCTCCCGAGGCGA	alt_516_RC	45	68	59	39	70	40	68	26	78	33
GGCTCAACACTTTCGG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CGAACATCTAATAGCG	alt_516_RC	9	17	8	10	16	6	21	16	18	11
TTACAAATCATTCATG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
GGTCCCCAAGTGGCCG	alt_516_RC	35	59	34	30	64	30	76	45	71	33
GTGCCATTCGGGCCTC	alt_516_RC	0	0	0	0	0	0	0	0	0	0
TCGGTGGGATTCCATT	alt_516_RC	1	4	2	1	3	1	4	3	9	3
TCAGACTCGTATTTTA	alt_516_RC	6	5	15	5	9	8	17	7	5	3
CGTATTGTGCTACCCT	alt_516_RC	7	22	5	7	7	5	12	2	11	6
GTACGGTCCTTCTCAT	alt_516_RC	22	42	20	28	43	19	39	25	42	25
GGATAGGTCGATCTGG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CCCGTCTACATGGGAG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
AGGTTTAATGCCTGTT	alt_516_RC	12	28	13	10	19	11	24	9	20	13
ATTACACGGTTGTCGT	alt_516_RC	13	25	24	23	37	22	26	23	29	20
CTACACTCGGCAGGAT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CCCTGCGCGACAGAGC	alt_516_RC	3	13	13	6	11	5	13	5	17	4
GGGCTACCGCGGAACC	alt_516_RC	6	18	13	9	15	9	21	7	23	11
ACTCGTACCTCCCCAC	alt_516_RC	2	33	4	1	26	3	42	1	35	6
GAGTGGGCGACAATCA	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CTATATGAGTGTAGGC	alt_516_RC	142	268	144	135	300	121	274	134	323	133
TTCATCCTCTTGTTCT	alt_516_RC	39	50	30	37	50	31	66	39	57	21
GGCCCTAGAGAATCTA	alt_516_RC	0	2	2	0	0	0	1	6	1	1
ACTGATGCCTGGTTAT	alt_516_RC	12	20	19	8	16	11	23	9	22	3
TTCTGTTCGTCAAGTT	alt_516_RC	24	51	24	27	61	27	50	27	49	14
TGTACTAGCACTGTGG	alt_516_RC	41	85	57	50	84	48	117	59	95	38
TTAGTCGGGTTGCTGG	alt_516_RC	43	72	47	37	70	43	81	33	70	33
TATCCTCAGCTGTCCG	alt_516_RC	53	89	53	39	118	55	126	57	99	52
GGTAGCCTTAATAACG	alt_516_RC	3	9	7	8	3	1	7	3	8	3
GAGGCTGCTAGTGGGA	alt_516_RC	0	0	0	0	0	0	0	0	0	0
GCAGGTATCCCGTCAA	alt_516_RC	22	45	24	20	49	22	32	18	45	22
GGAATATTAGATGGTG	alt_516_RC	19	21	19	19	18	10	21	17	22	16
CCAGGCCCGAGCTCTC	alt_516_RC	5	6	8	6	11	6	9	4	18	8
CCGTACCGAGTTCAAT	alt_516_RC	5	5	6	10	14	6	11	2	15	3
TATGAATTTTATCTGC	alt_516_RC	12	18	12	16	17	9	17	5	15	3
TCTTACTTGTGGCTTC	alt_516_RC	2	8	3	3	6	3	1	5	8	3
TCACCAAGTCGGTCTG	alt_516_RC	4	15	9	6	21	12	22	6	19	8
TAAGTCCCGTTTTTTG	alt_516_RC	21	42	29	27	49	20	41	14	46	21
TAGGACACGCAAATGC	alt_516_RC	6	7	9	6	5	14	12	7	10	4
CCAAAGGTCGGTGCAT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
TACTAGCTAAGCTATC	alt_516_RC	25	41	34	14	29	30	43	9	37	21
AGTCGTTGGTCGTAAC	alt_516_RC	11	12	12	9	18	4	17	14	12	8
TTGATCATGCGGCTGT	alt_516_RC	28	38	20	26	47	18	51	22	30	21
TGCCTTAGGTCTTGCC	alt_516_RC	0	0	0	0	0	0	0	0	0	0
GCGATTAGCATCGGAG	alt_516_RC	35	71	40	45	75	43	82	41	80	41
CACCGTCACCTTCTGG	alt_516_RC	7	11	9	7	14	6	12	5	16	13
CTACATGGGGAGGGGC	alt_516_RC	23	32	23	20	41	29	39	24	56	23
AGAATTCGCGTTATTT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
TTGGATCTAATGGCTC	alt_516_RC	5	16	10	11	13	16	13	6	15	7
GAGAGTGCTCCCGTGC	alt_516_RC	8	13	6	4	12	11	15	2	12	8
CTGTTCATGTCAGTGG	alt_516_RC	31	49	23	27	72	20	57	15	57	19
CCGGCGCTGCCCGTAT	alt_516_RC	0	0	0	0	0	0	0	0	0	0
TACTGCTCGCGTGCGG	alt_516_RC	35	53	41	28	53	20	66	38	71	29
CGTAAATATGGTCAAT	alt_516_RC	7	24	9	11	13	9	16	15	12	9
GATCTAAACACATTAA	alt_516_RC	2	5	1	1	4	0	5	0	5	1
AATAAGAAGACGCTTA	alt_516_RC	5	6	6	3	6	7	12	10	7	12
GGCGTCAGCCTTTGGT	alt_516_RC	15	16	10	10	22	8	29	10	28	10
GCCACCAGACCCTATG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CTGGGTCACCAGTTGT	alt_516_RC	34	87	41	50	75	33	55	35	90	33
TTGTATTTCCAGATTG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
CGTTGTTGTCCGGGCC	alt_516_RC	0	0	0	0	0	0	0	0	0	0
TACTGGCTCTCCACCT	alt_516_RC	4	11	3	5	12	3	15	2	11	5
GCGTTTTTTCACTCGT	alt_516_RC	7	8	6	7	9	2	20	2	24	12
TGGTCCACGCTGTGAC	alt_516_RC	0	0	0	0	0	0	0	0	0	0
ATCTTCAGATTAGTCG	alt_516_RC	11	38	28	16	42	23	44	21	48	9
AAACCAGGACTATCTG	alt_516_RC	33	48	40	29	69	40	61	32	61	27
TGTCCCTACATCTCTA	alt_516_RC	3	11	8	4	4	4	12	0	3	1
TGCGCCGCGCATTGCA	alt_516_RC	55	131	58	47	79	43	133	42	134	48
CGTAACGTTGAAACGG	alt_516_RC	0	0	0	0	0	0	0	0	0	0
GTCGAAGATACTATCC	alt_516_RC	11	33	15	12	36	11	43	16	37	22
TATGGCTCCGAGAGTC	alt_516_RC	11	19	11	11	21	12	18	12	26	16
TGTGCGGCCAACATGC	alt_516_RC	16	72	17	25	77	19	86	22	81	9
TATCATTGAAGTTTTA	alt_516_RC	0	0	0	0	0	0	0	0	0	0
TCGCGTATCAGCTCCA	alt_516_RC	30	32	46	23	40	32	56	21	46	22
AATCGATCGCGTCTCT	ref_2295_RC	17	14	17	19	29	13	23	12	25	14
ACTCAGCTATTTGGAT	ref_2295_RC	13	20	18	16	24	18	24	9	23	18
CAAGGATCTTCGTTTG	ref_2295_RC	24	50	25	34	34	22	50	25	32	34
TTTCGGGCTCTGCACA	ref_2295_RC	21	31	28	28	37	32	50	44	37	26
GTATCCCGCAATGCAG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
AGAACTGTTTTTGAAT	ref_2295_RC	25	39	23	33	36	21	36	22	26	21
AGGTTAGATACTCGGA	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
CCCGGAAACGCTTTCT	ref_2295_RC	88	68	119	94	92	96	107	84	100	90
GAGCACGGGAGATAGG	ref_2295_RC	27	40	40	37	39	32	32	44	47	22
CGGCACCAGTAGGGAT	ref_2295_RC	29	40	34	29	33	27	51	29	42	24
AGGGTTCTGTTGAGCG	ref_2295_RC	61	64	58	28	83	58	78	47	91	48
TTTCACTTGCTATTCA	ref_2295_RC	51	80	61	48	77	46	91	64	52	59
CCAAGTCTTAATAGGC	ref_2295_RC	9	13	6	3	16	11	13	3	9	4
AGTACGCTTCTGAAGT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GACTTTACGCCGTTTT	ref_2295_RC	30	27	40	37	42	40	31	47	56	36
TCTCCGGTACTCTCCC	ref_2295_RC	3	23	6	7	34	4	22	6	32	1
TCCATACGGTTAGCGG	ref_2295_RC	37	39	46	33	35	44	37	27	38	31
TCCAGAATCCGAGGAA	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
CGTGCCTCTCTGAGCT	ref_2295_RC	218	238	264	222	294	177	269	190	313	209
TCATCATCTTTGGTGT	ref_2295_RC	35	58	40	39	62	34	50	44	63	33
GATGCTGTGGTGTTTT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GATTATGAATTTTGAG	ref_2295_RC	32	33	38	23	37	17	33	32	40	21
GTCTTGGTCCATTGCG	ref_2295_RC	36	60	37	29	47	25	58	33	55	28
TGGAACCTCCTTTGAT	ref_2295_RC	19	15	8	15	11	18	20	7	19	7
TTCTCATAATGGCCGT	ref_2295_RC	22	21	23	20	20	19	17	20	21	15
TGCACTACGGTACGAA	ref_2295_RC	11	16	8	12	16	22	18	14	21	8
AGGTGAATAGACTCAG	ref_2295_RC	32	20	29	20	31	19	36	29	31	23
CACGGGCGTTTTACCT	ref_2295_RC	123	192	168	115	186	122	165	122	164	129
TAACCGCCTTCTCGTA	ref_2295_RC	10	14	5	8	11	3	8	1	3	5
TTGCTAATGTGGGAAG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GCACACGCAGTTGCAG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
AGTCTTTGTCGTTTCT	ref_2295_RC	25	25	24	25	18	21	24	25	21	26
TGACGGTAAGTCTCCC	ref_2295_RC	54	134	28	31	147	32	130	28	156	15
ATCTGCTAGATACCGT	ref_2295_RC	92	118	112	102	146	116	141	84	128	84
GCTAGAACGTAGGCTC	ref_2295_RC	16	25	24	24	14	13	23	15	19	19
CGCGCCAACTTCTTGC	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
AGCTAGTTCTAATTTT	ref_2295_RC	165	220	201	169	220	170	235	138	223	137
CTCATCATTAAGCGAA	ref_2295_RC	24	26	19	24	34	25	19	17	30	21
CATCTAGAACATGTTA	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GATCTACTTGCCTGCT	ref_2295_RC	153	211	169	152	197	116	248	120	221	109
TGGCACATATTGCTTT	ref_2295_RC	8	10	12	12	16	6	6	5	5	3
CACTGCGAGTTGAGTG	ref_2295_RC	3	8	1	2	11	6	7	2	3	4
ATCTGCATAAGCCTCA	ref_2295_RC	76	112	84	75	116	67	121	66	119	52
CTCTGTTCGGCTGCAT	ref_2295_RC	36	58	77	49	60	40	86	48	54	38
TCCTGCAATTTTTCGC	ref_2295_RC	6	5	11	15	7	5	14	9	8	10
ACTGATTTTAAATAGA	ref_2295_RC	13	25	20	16	28	12	18	21	24	13
AACGGCTTTATGGTGC	ref_2295_RC	94	174	87	87	173	104	163	82	160	66
CGCTGGAAGGTCCCCT	ref_2295_RC	43	58	58	59	63	41	50	57	59	52
ACGAACACCCGGTGGG	ref_2295_RC	73	83	72	64	80	49	66	57	81	62
GCTACTTATCGTCAGA	ref_2295_RC	1	0	0	0	0	0	0	1	0	0
GGCATGTTACATCCTT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GCCTGTTCCGTCGGTT	ref_2295_RC	3	2	3	2	2	1	2	3	5	1
TAGTAGAGCTTATAGC	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
CTCGCGTCTACATTGG	ref_2295_RC	15	12	5	10	25	12	20	12	30	14
TTTCGGCCTCTGCACG	ref_2295_RC	79	95	89	80	125	63	129	75	131	64
TAAGCGCTGCCCCAGC	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
TGGTCGGTAGTGCGCT	ref_2295_RC	7	25	10	16	25	10	40	7	33	14
CTCCGAGATACCGCAG	ref_2295_RC	36	39	40	38	60	37	43	34	45	25
ATTATCCCACGATGCA	ref_2295_RC	50	69	83	69	61	63	71	35	91	48
GCCGATCTGAATACTG	ref_2295_RC	73	107	78	83	115	77	91	85	123	68
ATGATCGGACCATGGC	alt_2295_RC	32	41	45	38	36	35	37	37	37	40
TCATGTCCTAACCATT	ref_2295_RC	43	32	47	29	42	31	45	32	48	39
GCCAACGTGGCATGCA	alt_2295_RC	27	26	21	15	29	25	30	26	42	22
GAGTCTCGAATGTTAA	ref_2295_RC	18	15	19	17	19	10	26	17	20	13
AAGCGGTCAATCTCAG	ref_2295_RC	10	15	28	9	7	7	22	9	11	7
TGAATCCGAGCGCATA	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GCCCCATTGGATAGGT	ref_2295_RC	36	37	34	42	50	34	45	14	54	33
CGCAGGTCTGAGAGGC	ref_2295_RC	7	22	23	24	31	14	19	21	20	19
GATAGTGAAAAGTTGT	ref_2295_RC	20	41	37	37	43	34	52	33	37	38
GAGGTGGAGTGGTTTG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
ATTATTCGCGGCGGGC	ref_2295_RC	15	14	14	14	17	14	19	8	16	19
TAACGGGCCCGTTCTC	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
TTGAACCTCTAGTGCT	ref_2295_RC	107	168	149	162	191	128	235	103	227	121
ATCCGAGGGCGTTTTT	ref_2295_RC	34	29	25	21	38	30	42	26	26	28
CTGGTAATATAGTTAC	ref_2295_RC	38	75	40	37	58	35	53	35	60	34
CTCTCCGATACTCATT	ref_2295_RC	13	18	13	12	13	14	17	6	11	6
AGACTTTGGGGCTGCG	ref_2295_RC	102	139	137	117	152	151	138	94	141	118
GGGCAATGAGAGACTC	ref_2295_RC	59	68	75	61	70	56	64	51	70	65
TTTGGTTTTATGCCAA	ref_2295_RC	29	38	61	47	51	45	57	45	67	42
TTGACGGTACTTGCAG	ref_2295_RC	20	25	13	8	19	18	16	22	26	14
CGTTGCTAAGGCTTGC	ref_2295_RC	37	32	44	49	51	28	38	33	46	36
TATCCAACTGTGCAGA	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
ATGGACCTAATTTATT	alt_2295_RC	86	87	98	83	126	91	107	76	111	90
TGGTAACCTTGCTATG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GAAGAGAGCATTTACC	ref_2295_RC	6	12	7	6	5	6	11	7	22	6
CGGTAGCGAGTGCGCG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
TTCTGGTATTCACAGG	ref_2295_RC	22	51	36	40	51	29	46	30	39	35
CCGCATATGACTGGTT	ref_2295_RC	36	59	42	33	51	34	46	30	54	30
TGGCTCATTGAGTTAT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
CCTAATCTGCTCGATT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
ATTTACGCTCAAAATG	ref_2295_RC	9	16	10	4	4	6	8	8	5	4
CCACAGAGTATTAAAT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
CCCCCCAACTTATATT	ref_2295_RC	9	15	15	11	13	8	11	10	18	4
TTTTACACGGCTTATG	ref_2295_RC	45	41	46	37	53	32	55	46	54	27
GCTTAGCGGTACATCC	ref_2295_RC	12	13	14	9	16	9	21	5	23	9
AAGGAATGCTATGATT	alt_2295_RC	16	20	27	20	18	15	38	15	31	14
GTTATACTGCGGTCTT	ref_2295_RC	96	164	139	119	170	107	158	103	158	98
ATTGGATTCGTCGCCT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
TTTGGCTCCACATATC	ref_2295_RC	3	7	8	6	9	5	12	10	6	7
AATCTTGTACCGAGCA	ref_2295_RC	44	71	67	56	58	54	76	55	78	55
TTAGATTACCAGGCAG	ref_2295_RC	39	75	49	41	79	37	56	48	56	43
CCTCTTATCTGACGGT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
CCGGGTGCTGTGCTAT	ref_2295_RC	63	112	72	69	129	44	128	48	113	52
GCACTTTTTCTAGATA	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
TATCTGTGATCCCTAT	alt_2295_RC	1	3	2	0	4	1	0	1	2	2
TATCTTGCGGATTAGG	ref_2295_RC	65	112	104	75	114	71	102	72	104	74
GATGGTGCTTTCATTT	ref_2295_RC	43	44	43	39	44	20	49	26	53	26
CCGCGATTTTATATAC	ref_2295_RC	12	14	9	6	12	4	5	1	15	8
AGGTTTCTTTCAGGGC	ref_2295_RC	15	18	21	9	19	14	18	13	19	6
TACGCCACTATCGAAA	ref_2295_RC	24	29	20	15	27	17	31	22	32	18
GTTGTGGTGAGTCGCT	ref_2295_RC	68	96	80	73	101	59	103	64	105	57
TACTGCTATTAACACT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCCAGGTGCTAA	ref_2295_RC	29	18	28	13	8	18	27	11	23	6
TGGTTAGATACTCGGA	ref_2295_RC	163	162	155	141	178	145	187	146	201	112
ACTGCCTGCTAATAAG	alt_2295_RC	135	153	122	121	155	131	190	97	173	99
TCATGTTTTGGCAGTC	ref_2295_RC	20	25	28	7	24	17	27	16	35	17
AGAAATTTGAATTGCT	ref_2295_RC	9	20	13	15	15	18	20	15	27	11
TTCTAAGTGATGCTTA	ref_2295_RC	118	138	131	100	154	95	143	80	159	106
ATCTGCTTACCGGGGT	alt_2295_RC	15	11	12	13	14	14	26	11	12	9
CTGGCAGCAGATCGCA	ref_2295_RC	12	8	5	9	11	4	8	3	8	7
TCTGGATCCATTATTC	ref_2295_RC	19	32	34	27	39	29	34	19	45	18
AGACCACCATGCCCCG	ref_2295_RC	15	26	28	14	35	14	26	11	38	9
TTGCTGTGTTTAGATT	ref_2295_RC	40	39	39	40	41	27	41	25	39	31
CTGATTTATGACGATT	ref_2295_RC	5	7	6	6	4	8	7	10	5	3
ACTGGTGGAAGGGGTG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
GCATGCTGCTTTTTTA	ref_2295_RC	68	62	64	39	62	45	82	56	69	47
TAATGGGTTTATAGCC	alt_2295_RC	111	116	119	94	103	95	111	99	126	78
AGTGAATTCGTCAGTT	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
ATGCTCTCGTATTTGT	ref_2295_RC	12	18	7	17	25	12	11	15	25	11
GCCTTCTATCAAGCGG	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
TAACTTTATGGTTTGT	ref_2295_RC	3	1	0	5	1	4	3	2	4	0
GCGTCGTGTGGATCTA	ref_2295_RC	10	33	27	23	32	17	28	11	24	17
AGAGCACCGCGGTGTC	ref_2295_RC	34	48	36	30	40	22	46	32	49	42
CCACAAGCATAATAAA	ref_2295_RC	2	4	4	2	4	4	2	2	7	3
CAACTGGGCGCATGGA	ref_2295_RC	0	0	0	0	0	0	0	0	0	0
ATAAGAATGACCTTAT	ref_2295_RC	26	32	27	18	23	18	33	21	32	11
CGGCTAGGGTTTGTCC	ref_2295_RC	17	25	13	13	28	14	23	26	31	14
TGAATCTATGTAGACG	alt_2295_RC	20	20	32	25	17	22	24	27	37	18
ATGAGGGCGTCAATTT	ref_2295_RC	53	61	58	43	43	44	81	53	71	51
CTCGGTTCTTCCTGTG	ref_1522_fdr	22	41	30	22	36	41	39	20	24	16
ACTGGCAACTGTTTTC	ref_1522_fdr	13	14	9	8	9	13	10	9	21	8
CCCGTCTCCATCTAGC	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
GCATTTAGACCGCAGT	ref_1522_fdr	47	53	68	60	58	49	54	58	31	45
ACTCCCGCTCACTTGA	ref_1522_fdr	1	3	1	1	14	0	12	0	9	1
AGGTAACATATCATAG	ref_1522_fdr	13	13	13	13	15	13	16	19	11	12
TCTATCTCCTGTACGC	ref_1522_fdr	12	11	16	12	15	13	8	18	8	10
TACCAGGTTCTCCTTA	ref_1522_fdr	54	47	55	47	39	38	49	34	47	34
ACTGACCGGTAAAAGG	ref_1522_fdr	80	79	107	90	102	105	85	86	103	92
TCCGTCTGCTACTATC	ref_1522_fdr	29	41	35	37	51	49	46	35	55	30
CCTAAGTGACGTAAAC	ref_1522_fdr	42	53	34	35	59	21	43	21	48	25
CCAGCCTTTTCACCTG	ref_1522_fdr	4	17	9	7	18	8	19	4	19	5
TATGCTCAAAATGATA	ref_1522_fdr	33	35	45	39	36	33	50	35	37	32
TCCTCCATAAAATTTT	ref_1522_fdr	6	9	4	2	9	5	7	8	6	3
CCTCGATGTGTGCCAT	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
ATATTGCTGTGTCTAG	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
TTCATCGAAGAAAACG	ref_1522_fdr	48	34	51	44	42	42	35	61	47	45
CTCTTCGCTGTGGCGC	ref_1522_fdr	124	98	128	133	110	103	97	77	114	120
CTACGACTGGTTCTGG	ref_1522_fdr	38	72	56	54	86	47	70	41	67	45
GCCCGGTTATTACTTT	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGATGGTTAGTTC	ref_1522_fdr	39	52	44	54	30	43	29	35	49	30
CCTTTGGTGTTTGGAA	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCGACTCATTCAT	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
ACTCACGCTCTGGTTT	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
TTCCATGCTATCGGAG	ref_1522_fdr	48	43	56	46	47	39	38	40	45	32
TAATCTACCAAGTTGG	ref_1522_fdr	39	31	50	34	38	31	65	39	50	32
GCTACACCGGCCTTTG	ref_1522_fdr	28	35	34	17	46	16	44	14	37	20
GGAGCCTAGGTCACGC	ref_1522_fdr	83	50	91	58	81	66	48	81	84	68
CTTACCGTAATGTGCC	ref_1522_fdr	35	63	44	40	62	36	59	33	67	33
TGGGTGCCTTTTCCAG	ref_1522_fdr	47	45	60	57	57	43	58	51	59	53
TTTTAAGTTGCTTTGA	ref_1522_fdr	107	121	140	128	128	83	144	115	140	88
GGTAGGCTTGTGCAGC	ref_1522_fdr	34	38	38	17	18	19	22	23	23	15
CTCGTGGCAACAAGTC	ref_1522_fdr	218	201	245	219	196	173	213	179	181	147
GTTGAAGTGGCATTTT	ref_1522_fdr	57	57	86	70	63	55	71	48	60	44
CACGCATGCCACATGA	ref_1522_fdr	34	25	50	37	51	19	38	22	39	37
CGCCGCTGTCTTATTG	ref_1522_fdr	7	7	2	14	16	16	17	17	20	10
TACAACGAATATCGTA	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
TGATAGCCAAAGCGTC	ref_1522_fdr	156	181	210	169	197	148	154	160	196	156
TTCCATCAGTTTTTAT	ref_1522_fdr	65	75	98	53	85	59	71	53	97	51
GACCAACGGTTAGTTA	ref_1522_fdr	13	18	19	6	18	18	17	12	14	12
CCCCCCGAAAAAGCAG	ref_1522_fdr	41	45	51	51	44	36	51	38	48	40
AGTACAGTAGAGCTTT	ref_1522_fdr	40	48	71	52	43	50	62	39	40	47
ACTAGGTAGCTTCGTC	ref_1522_fdr	23	14	18	14	9	22	22	15	10	15
CAACAGATATCGGGCC	ref_1522_fdr	81	64	79	61	76	79	45	77	57	62
TACTCGTTTTGACCGC	ref_1522_fdr	177	173	217	189	194	196	234	160	247	166
ACGGCACTCATGAGGT	ref_1522_fdr	3	5	7	6	3	5	4	2	4	2
CTTCGGGCGGGATCGT	ref_1522_fdr	16	12	23	21	13	13	14	18	25	16
TATACCCGCAGTGGTC	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
ACATGCATCCCGGTAA	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
CGACGAGGTACCATTT	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
ACGCTCATGTATGGCG	ref_1522_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGACGTGAAACAG	ref_1522_fdr	15	23	22	19	17	19	12	13	21	15
GGCTTCGCAATGTGCC	ref_1522_fdr	32	28	49	35	30	24	29	38	44	32
TTCCTCGGTGTAATAA	alt_994_negative	11	19	2	6	12	4	16	2	18	4
GGACTAGATCGCCGCC	alt_994_negative	12	30	18	16	37	11	24	18	27	5
ATTGGTCGCAATTAAA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TATTTCAATGTTTGGT	alt_994_negative	33	60	40	24	58	24	76	24	74	22
TGTACCTCTGTCATCC	alt_994_negative	22	39	24	17	56	13	53	15	59	19
GGGCCCTCGATGATAC	alt_994_negative	30	117	43	41	128	33	142	35	131	29
TGCGGATTTTCACACC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TTCAGATTCATACGCT	alt_994_negative	4	3	0	1	3	0	2	1	2	1
CCCCAAACCAGTTGGT	alt_994_negative	11	95	13	23	89	21	74	11	85	10
ATATACAGTCGGATAA	alt_994_negative	5	8	2	2	12	3	9	1	9	3
TATTGCAGACGAGTCA	alt_994_negative	5	11	9	7	5	9	13	3	18	3
GGTGGTGTCATCGTTG	alt_994_negative	9	32	9	20	25	11	23	8	25	12
TTTTCAGGCCGCGCGC	alt_994_negative	22	54	30	21	41	12	57	22	58	24
TAGAGATTCAATTTCC	alt_994_negative	11	17	6	15	24	6	22	8	39	5
CGACGGATAAGGCCGG	alt_994_negative	11	4	14	5	23	6	21	6	22	3
GCAGGTGTGTGGTCTA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
ATGGTACGATAGCCTC	alt_994_negative	6	22	8	7	22	4	15	7	21	7
GTTCTGCTTTTAAAAC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
AAATTTCGTCATGTTG	alt_994_negative	105	237	129	101	231	97	228	81	260	110
GAGTTTTGTAACAGCG	alt_994_negative	0	5	1	3	6	1	5	2	3	1
TAGATCCTTTTTTAGG	alt_994_negative	24	44	33	18	63	25	73	27	86	23
CGTGGTACATAATGCC	alt_994_negative	39	77	53	24	69	29	108	23	83	47
TTATCAGTAGGACCCT	alt_994_negative	15	46	20	21	61	24	53	20	69	19
GGGTAGAAATACAAAG	alt_994_negative	37	91	70	50	94	57	100	47	109	52
CCTCACGTATAAGACT	alt_994_negative	15	26	14	4	22	7	9	4	28	10
GTATGACTTGGTAGTG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TCGTGAGCGGTTGTCG	alt_994_negative	4	7	5	5	12	4	9	2	4	3
GGTAAAGTTGTTCGTG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TATTTCTTTGGTGCAT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CGTTTCACTGGCTATT	alt_994_negative	8	12	8	4	17	1	14	10	15	6
GGATGTCTTTTCATGC	alt_994_negative	32	86	66	57	94	44	80	54	89	49
CTCTTGCCTCAAAGTC	alt_994_negative	15	63	29	38	73	27	71	21	79	30
TGCTGGCTTCAAGTTT	alt_994_negative	4	4	7	1	17	7	6	6	13	3
GCATTCGTTTCAAATC	alt_994_negative	15	48	12	10	30	6	23	12	25	9
AATCATTTAAAATCCC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TGGCCGCCACATTGCG	alt_994_negative	7	3	14	6	20	7	15	4	13	5
TGTGTCCCGCCGCTTT	alt_994_negative	10	10	7	1	16	8	13	2	20	7
CATAGAATATTTTGAT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TGGTCTTTATTAGAGC	alt_994_negative	2	8	2	0	15	1	11	4	6	3
TACACTTTGTTTTAGC	alt_994_negative	5	18	1	3	10	3	22	5	10	6
GGTGTGGTTTGAGCGT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
ACTCCGTCTTTACAGT	alt_994_negative	2	15	2	0	9	2	15	3	13	2
TATGTACAATGATACA	alt_994_negative	61	147	100	71	164	69	207	58	196	64
GCCGACGTAGGCTTAA	alt_994_negative	1	6	2	0	7	4	1	1	4	0
ATATGCGTCTACTATG	alt_994_negative	12	31	12	12	31	9	26	5	34	16
TCGCGAAGTCGGAAAG	alt_994_negative	5	23	8	9	9	5	13	8	24	5
TCAGATTTTATCCGAG	alt_994_negative	10	32	13	4	21	11	29	8	48	9
GTACCAACAGTGTCCT	alt_994_negative	16	43	25	18	38	10	64	19	56	18
TTTTGTCTCGTCACTC	alt_994_negative	19	42	18	23	54	11	65	11	53	19
GATGCGCAGATACCAC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
ACCCGGAATGTGCTAC	alt_994_negative	14	25	8	9	29	10	39	17	40	7
CCGAAGGTCCGTAGTT	alt_994_negative	1	7	5	3	13	4	12	3	10	3
GTCCCTAATCTCCTGA	alt_994_negative	14	35	14	12	30	9	26	10	26	15
GGAGAACGCCTCTATG	alt_994_negative	0	1	0	0	1	0	2	0	0	0
AGCTCTCAAATCCCTT	alt_994_negative	11	33	15	11	37	8	30	13	25	9
CCACAGAGTCCATGGC	alt_994_negative	16	35	19	38	35	23	42	15	45	5
GCTATCTCCCCTATGG	alt_994_negative	1	13	2	1	4	1	7	1	6	1
CTAGGAGTGTAGTGGA	alt_994_negative	18	52	36	27	51	24	39	23	67	22
TTTCCCAGAATGTCAC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TATTTTTTTTACGAAC	alt_994_negative	3	10	4	4	14	2	16	2	6	5
GTTGAATCGCCCCTTC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
AGCGTTTAAGCCCGTA	alt_994_negative	12	43	12	14	29	18	39	20	46	16
TTTCTTTGCACGTCGT	alt_994_negative	5	2	3	2	3	5	8	1	6	2
CTAGATCATGGAGCCA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TCCAACTGATCGTAGA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CCGTTTCGGAGGAAAC	alt_994_negative	24	64	36	25	64	32	74	27	71	26
TTTATTCGATCCTTGC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CCTGCCCACCACTCCA	alt_994_negative	21	16	9	9	18	11	22	14	22	9
TCGTCCATTGGGTCAG	alt_994_negative	9	14	2	5	22	7	18	8	25	9
CATACGCTTTTTAGCT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
AAATCAGTCTAGAACA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GTTATGTCATTACTTT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TACAGTGTTTATATAA	alt_994_negative	5	3	2	2	2	2	3	2	0	0
TTTCTGGCTTCGCGCA	alt_994_negative	89	214	131	97	187	101	181	101	217	109
CTAATTGAGGATTATT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
ACGTCATGGGACCTGA	alt_994_negative	1	8	8	4	6	2	7	2	3	3
TGATCCCGCCCGAATG	alt_994_negative	24	47	9	19	43	27	50	10	45	19
TCCCCGTATACACGTT	alt_994_negative	1	14	1	2	17	2	25	1	14	0
GCTTGATCCCCATATT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GGAATTGTTCGTCATG	alt_994_negative	16	25	12	7	32	15	27	11	30	10
TTGGGCTTCGCTCTGG	alt_994_negative	39	58	30	28	62	23	66	30	70	25
GCTTCGAGGGTTCTGA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TTAATCAAAATAGGGA	alt_994_negative	15	33	17	24	39	14	38	11	42	16
ACCCTAGTTTCGGGCG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CACTGAATTATCCTTC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TCCTGTTCTCTCTGTG	alt_994_negative	14	24	20	10	28	7	33	13	51	12
ATGCATCCATCCCGTC	alt_994_negative	7	19	5	5	15	4	16	3	13	5
GCTGGTTTTCCGCATA	alt_994_negative	12	40	14	6	14	14	22	5	31	11
AGGCCCTCGTGTCAAT	alt_994_negative	0	8	0	5	6	2	7	1	4	3
GTGCTGTACGTGGAAT	alt_994_negative	32	83	37	42	87	30	62	24	75	32
AGGCTGTTGCAACGGA	alt_994_negative	26	56	23	28	39	22	47	18	69	20
TTTTCGACAATTATCA	alt_994_negative	7	26	7	10	22	12	23	11	23	5
ATGATCGCTCTCATAG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GCTTTGCAACGTACAG	alt_994_negative	5	12	6	7	20	6	13	7	14	4
CGGTAAACTCACGAAG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
AGTCACGCATTCTCTA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CAGACCTTGGACCCCA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TACTAATTTAATTTCA	alt_994_negative	14	25	9	17	23	17	37	17	23	27
TTGTCCGTTGGTTTAT	alt_994_negative	6	15	7	3	15	4	12	4	12	8
AGGCTGCGGCACGTAG	alt_994_negative	12	20	12	2	29	6	26	10	26	9
TATACCCGATCTTCTT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CTGTGGTCGTCTCGGT	alt_994_negative	19	62	16	26	52	18	56	25	52	11
GGGTATTCGTTTGCAG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TTGGATCTCGGCTGAT	alt_994_negative	16	36	27	13	36	21	37	9	53	25
AACATTGAGGTCACTG	alt_994_negative	0	2	6	2	4	3	5	2	5	2
CCTGCTTACCCGGCCG	alt_994_negative	11	43	14	7	37	18	57	15	56	8
TTCCTGTGCTGAGTGA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GCGTCTGTAATTGATT	alt_994_negative	10	21	7	4	26	8	25	7	22	3
GCTGTTTCGGTGACCG	alt_994_negative	7	18	7	2	24	4	15	8	12	3
TCTTGTCGACTGAGCG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GTAGTTTCAGGGGCTG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GTGTTAGTGAGCGTTG	alt_994_negative	6	13	2	3	11	5	12	6	20	2
TAAATTTTATGCGATG	alt_994_negative	3	7	6	12	5	2	15	6	14	7
TCAAACTGTTGCAGCC	alt_994_negative	8	26	16	11	45	14	29	7	18	9
ATGTACTCAGAGGACC	alt_994_negative	6	12	17	11	13	10	31	4	38	7
CATGCTATATCCTCTA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GACTAGGCAATATTAT	alt_994_negative	5	5	6	4	13	6	12	6	11	2
GTGTTCACACACTGTG	alt_994_negative	4	9	3	2	5	1	5	1	10	1
TGCTAGACGCCATGTA	alt_994_negative	3	11	6	1	10	5	7	6	2	1
ACTGGTCTGTATTTCC	alt_994_negative	8	81	15	11	69	12	62	13	61	5
GACAATTCCACAAAAA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CAGTTTTGCGTTGGCA	alt_994_negative	5	16	7	6	16	6	15	6	11	5
CGCGGCCGGAGTTAGG	alt_994_negative	13	49	15	22	38	16	40	17	42	15
TTCGCGGTCACTTGTA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CGTACCTGCTTTTAGT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TATTAGAAGTTTGCAG	alt_994_negative	23	57	26	27	37	8	49	17	47	12
GTCGAGAGATTCGGCC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GTCACAGTGGCCCCTT	alt_994_negative	49	115	53	55	102	45	123	48	112	33
GCACCATTTTATTTCC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GCCATTGTAATTGTTG	alt_994_negative	8	7	2	2	10	3	8	5	11	0
TATGGTTTAGTGCATG	alt_994_negative	25	67	20	27	69	33	61	34	73	27
TACTATATCGAGAGAA	alt_994_negative	16	31	18	10	29	15	37	13	35	14
CATCTTGGGGTATATC	alt_994_negative	1	4	9	3	2	4	9	3	10	5
TCCTTGTGCAATTACT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
AGCTCTCAAATCCCTA	alt_994_negative	0	0	0	0	0	0	0	0	0	0
CGCCATTGGGCCGTGC	alt_994_negative	0	14	2	5	11	4	18	1	10	4
CGGCTATCGATAACGC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GGGGTTCTTGGCTATT	alt_994_negative	7	28	14	10	27	8	24	12	20	11
GTTTCATGTCTCAACT	alt_994_negative	11	16	12	12	23	7	12	6	16	10
TTGGCAAGTTTTGTGT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
TTGGAACGTTCTCGCA	alt_994_negative	16	55	20	17	61	15	43	5	50	20
CCGCTATAGGCCGAGC	alt_994_negative	0	0	0	0	0	0	0	0	0	0
ACTTGTCTCTAACCCC	alt_994_negative	10	21	14	4	22	3	15	9	20	9
AGTCGGGTTGCGTACG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GTCTCGCTGTCGGGCT	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GACTCCGGGCAGTAGG	alt_994_negative	0	0	0	0	0	0	0	0	0	0
GCGCGGAAAATACGCA	alt_5920_new	130	118	127	141	153	113	155	101	160	105
CTCGGTAGACTGCATT	alt_5920_new	9	65	17	6	64	13	58	9	75	4
GCTCACAAGGTCTTAA	alt_5920_new	3	3	7	1	1	2	2	5	5	0
CGCATAAGGTATCACA	alt_5920_new	0	0	0	0	0	0	0	0	0	0
CTTATGTTTTAGCGTT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
CCCGGGTTAAGTTTGT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
AACGAGGTGCACATAT	alt_5920_new	137	26	191	122	32	130	37	122	23	85
TTCGTGGTTATCTTAG	alt_5920_new	73	114	110	58	130	83	124	78	122	61
ATGGTAGTCGTCACGT	alt_5920_new	52	51	50	35	47	28	39	31	55	26
GTTGTCAACAAATTGA	alt_5920_new	0	0	0	0	0	0	0	0	0	0
CACCGTCTGACGCGGA	alt_5920_new	17	36	30	32	51	34	35	29	37	25
TCCTACGTTGCTCCGT	alt_5920_new	25	45	42	29	37	17	67	23	42	30
CAACATGGCCCGAATA	alt_5920_new	113	119	149	121	116	114	112	132	124	87
GAAAGGGATGTCAGCG	alt_5920_new	0	0	0	0	0	0	0	0	0	0
GGCAGCCGCCTGGGGT	alt_5920_new	295	427	388	315	412	319	423	303	492	275
GAGAGGGACTGCTGGC	alt_5920_new	11	14	17	12	15	17	13	13	26	11
AGGACCATGGGCGGGA	alt_5920_new	7	5	7	11	4	13	10	7	12	7
GATCCTTATTAGGGGG	alt_5920_new	0	0	0	0	0	0	0	0	0	0
ATTCGTCTGACCGCCG	alt_5920_new	16	12	23	19	22	12	26	10	24	12
ATAGCTTGGTATGTTT	alt_5920_new	95	114	99	80	103	78	108	97	119	62
AACTGGTGATTCTGCG	alt_5920_new	101	83	83	70	121	73	86	70	89	73
CGTGTGCACCAGAACC	alt_5920_new	18	18	19	25	17	17	15	16	19	12
TGCAAATGTTCAATAG	alt_5920_new	53	82	76	64	68	55	78	50	90	48
AATCGACGATAATACT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
GACATTCAAGGTTGTA	alt_5920_new	71	76	87	66	78	69	80	61	95	59
TAAAGTCTACCGGGAA	alt_5920_new	3	0	4	1	2	2	3	0	3	2
GTGTGCCCTGGATTCC	alt_5920_new	25	31	39	21	29	31	37	29	28	23
GTCATCATCCATGTGT	alt_5920_new	55	54	82	42	50	47	52	41	46	40
ACTCCAAGTCCAGCAT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
CCGCAATAGTCTGCTT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
TCACGATTCGTTCCAT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
TCCCTGTTCTACTCTA	alt_5920_new	10	28	26	9	30	7	37	14	28	10
GCTTGGCCTTAATACT	alt_5920_new	18	12	12	21	26	15	22	16	26	10
CCACGTGAGTCCCTGT	alt_5920_new	7	16	4	8	18	5	16	5	25	3
GTTGGTATTCGTCTAC	alt_5920_new	0	0	0	0	0	0	0	0	0	0
GCCAATACAGTATGAT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
CGGCAACATCGTTTAT	alt_5920_new	39	35	39	40	40	34	33	34	43	35
GTTCCATTCCCACGCT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
TAAGGCACTTCGTGAA	alt_5920_new	43	65	53	58	42	49	51	49	55	37
AGATCGCCCCTATTCC	alt_5920_new	0	0	0	0	0	0	0	0	0	0
TTGATATCCAGCTACA	alt_5920_new	0	0	0	0	0	0	0	0	0	0
TTGTGGACGTTAGCAG	alt_5920_new	31	40	52	39	41	48	47	40	39	35
TAATGGTGCCTCTATG	alt_5920_new	6	4	7	6	4	6	3	5	5	4
TCGCTAGATCTTTTCA	alt_5920_new	0	0	0	0	0	0	0	0	0	0
GGTTTTTTAGTGGGGT	alt_5920_new	86	99	96	92	88	71	86	61	105	76
GCAATGCCATCGATCT	alt_5920_new	5	8	12	3	6	4	5	10	9	5
TCCTAGGATGTCTGGG	alt_5920_new	0	0	0	0	0	0	0	0	0	0
CTGCCTCAATCAACTC	alt_5920_new	9	16	7	8	11	14	16	10	28	6
CGTTCACAAGTCGAGA	alt_5920_new	64	65	61	67	70	36	52	54	56	43
CTGCACAGTGTGTTGG	alt_5920_new	5	7	6	10	11	7	9	6	14	5
ATACGGAGAACTAAGT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
ACCCGTCAGGTTCGAG	alt_5920_new	4	15	5	11	18	6	9	3	9	7
CGGGTATTACTGCTCG	alt_5920_new	65	61	68	56	50	65	62	63	62	56
GGACATGTCTTCAGAG	alt_5920_new	17	12	27	10	17	12	12	14	9	15
TCACCTCTGAGGTAGG	alt_5920_new	0	0	0	0	0	0	0	0	0	0
GAAAAGGAGTTCAGTA	alt_5920_new	36	36	46	35	47	30	31	36	67	28
CCTGACTAAAATCGTC	alt_5920_new	31	51	41	32	40	31	49	33	53	24
CGTGGTTGATCAAACA	alt_5920_new	177	217	208	199	231	181	220	160	260	136
CGGTTTTCGATCAAAT	alt_5920_new	260	244	306	268	287	266	305	232	278	232
CGGTTATGGTAAGGAA	alt_5920_new	0	0	0	0	0	0	0	0	0	0
ATGCATGGTTACATTC	alt_5920_new	0	0	0	0	0	0	0	0	0	0
ACATATAGTCGACGTG	alt_5920_new	12	11	4	8	9	4	13	9	14	8
GATCGTTTCGCGATAT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
CGTCTGTTATCAGTGC	alt_5920_new	0	0	0	0	0	0	0	0	0	0
GCCCTCTTCAGTTTAT	alt_5920_new	0	0	0	0	0	0	0	0	0	0
TACGACGCAAGTTGAG	alt_5920_new	30	51	39	45	34	55	55	45	65	41
GAAGATCACGTGGGAC	alt_5920_new	44	50	49	37	49	41	54	38	51	37
CTAGGTGCTTTGTGGG	alt_5920_new	0	0	0	0	0	0	0	0	0	0
GTTAAACCTCCTCTTC	alt_274_missing	26	44	26	23	33	33	48	22	51	22
GGACTCTATTACTGGC	alt_274_missing	15	14	11	12	15	10	17	10	15	10
TCTACTAGATCTACGT	alt_274_missing	12	11	15	19	7	10	11	8	6	8
TCGTCACGGATCTCGT	alt_274_missing	0	0	0	0	0	0	0	0	0	0
TGCGTCCACCCACCTC	alt_274_missing	7	15	17	24	17	12	19	8	12	19
GCTAACGGAGCTTTCG	alt_274_missing	13	3	10	13	12	8	10	10	15	8
AGTGTCCACCTGTTCG	alt_274_missing	16	32	17	20	30	16	34	15	34	27
TCGCATTACGTTTTTA	alt_274_missing	13	22	13	11	22	11	15	9	15	9
GGGCCGTTATAGATCG	alt_274_missing	54	68	66	56	61	65	79	62	77	54
GTACGCTCTGGAGAAG	alt_274_missing	16	15	16	13	23	24	23	18	16	13
TCATTGGTTAGTTCAA	alt_274_missing	18	29	35	22	35	21	40	19	26	16
GTATTATTCTAGAACA	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TTTGTGAATACACTTG	alt_274_missing	0	0	0	0	0	0	0	0	0	0
ATAGTTCCGCGGAACT	alt_274_missing	43	35	44	20	50	30	39	24	29	51
TTGTATGGAATTCTTC	alt_274_missing	37	32	45	30	36	25	33	25	28	23
ACGATGGCTTTGAGGG	alt_274_missing	21	15	17	15	21	21	13	18	32	15
GGACTCAAGTAGGCGG	ref_274_missing	15	14	12	11	20	11	16	13	17	15
AAGACACCCTTAAGGG	alt_274_missing	40	51	47	35	42	41	47	24	39	30
AAAATCTTGTACGAAA	alt_274_missing	4	7	11	6	9	4	9	7	6	2
CGTGGGTGAAGGTGAG	alt_274_missing	0	0	0	0	0	0	0	0	0	0
ACGGTTGTAATTTGCC	alt_274_missing	0	0	0	0	0	0	0	0	0	0
GCAGCATGGCCGCACT	alt_274_missing	63	46	52	38	47	57	46	59	54	38
TAAATCGAATACGGTC	alt_274_missing	0	0	0	0	0	0	0	0	0	0
AATGTAACGACGTTAC	alt_274_missing	11	11	18	15	14	18	18	20	15	19
GAAGTACGATTTACTG	alt_274_missing	0	0	0	0	0	0	0	0	0	0
AGGCTTGTCTAGGGCA	alt_274_missing	0	0	0	0	0	0	0	0	0	0
GCACTGCCCTAGGATA	alt_274_missing	10	15	15	12	9	13	14	8	18	7
TCGCATTGGCTCCACA	alt_274_missing	19	23	23	21	19	24	22	19	21	13
AGCAACGAAATTAAGA	alt_274_missing	30	32	54	31	24	33	33	23	40	17
ACTGCTTCTCAGCGCG	alt_274_missing	82	101	104	89	96	75	79	74	111	66
TTATATACCCCCACGC	alt_274_missing	0	0	0	0	0	0	0	0	0	0
ATGCTACTCGTGCGTT	alt_274_missing	0	0	0	0	0	0	0	0	0	0
GCACGTCCGTTTTCTT	alt_274_missing	0	0	0	0	0	0	0	0	0	0
TGCCACGCAGATGAAT	alt_274_missing	7	18	10	9	13	7	23	8	19	15
CCAAGTTTAATTTTGA	alt_274_missing	13	15	13	9	11	10	8	10	12	7
GACCGGTACTAACGCC	alt_274_missing	3	0	0	0	0	0	0	1	0	0
CTTTGTTTAAGTTGAC	alt_274_missing	20	16	17	15	18	14	21	14	26	10
CTAGCCATCACGGCTC	alt_274_missing	14	7	14	12	16	7	18	13	13	7
TGTCTTCTTACGCATG	alt_274_missing	15	28	30	24	35	16	21	22	38	16
TGTGTAGGGCCGCTCA	alt_274_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTGGGCTAACTC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TTCGTGGACCGCTCGT	ref_274_missing	10	14	7	7	16	10	16	10	24	8
TGGTCCGTCTAGTCCC	alt_274_missing	1	3	0	2	0	0	0	0	1	0
GGTATTGGTTCCATCT	alt_274_missing	40	49	37	34	73	42	63	46	53	26
ATTTCTCCCAAGTACA	alt_274_missing	44	51	44	45	64	45	45	49	53	39
TAATGACTGCAGTAGT	alt_274_missing	27	26	36	27	25	23	27	13	28	13
GATTATCATCCGATTC	alt_274_missing	2	12	4	4	10	7	4	13	5	2
GACGCATGCGGTATAA	alt_274_missing	33	27	28	21	19	27	30	20	38	17
AGCGGACGACGTCGAA	alt_274_missing	25	31	30	24	31	26	34	15	27	24
TAACATTCTGGTATTC	alt_274_missing	16	11	22	23	20	23	13	21	18	13
AACACAGGCCATAGGC	alt_274_missing	5	11	4	3	12	8	4	5	2	6
CCAGTCTTGTATTTGC	alt_274_missing	0	0	0	0	0	0	0	0	0	0
CATCGTACGCACCATA	alt_274_missing	4	10	5	2	9	2	4	5	4	5
TTCGCCACCTAAGTTC	alt_274_missing	31	32	25	28	32	13	33	12	30	24
ACGTAAACGGCCTTTT	alt_274_missing	9	6	5	9	12	6	14	3	10	3
CGTGTAGCAGTTCAAT	alt_274_missing	15	19	21	16	21	17	26	23	24	22
TGACCCTGTCTTACTC	alt_274_missing	37	31	18	28	35	31	36	32	45	17
GGCCCCGGCGTCTCGC	alt_274_missing	14	8	26	13	15	17	10	16	12	14
TAAAGCCTGCGTAGAG	alt_274_missing	41	35	34	44	48	31	45	32	41	36
AACGATTCATTTGCCA	alt_274_missing	15	32	16	20	11	19	26	15	25	17
ATTGCCCTTCGCCCTC	alt_274_missing	0	0	0	0	0	0	0	0	0	0
TTCTGCACCGCCCCCT	alt_274_missing	22	40	27	24	31	16	46	22	33	22
CTTCCCATGATTGTCG	ref_4649_fdr	31	26	45	36	26	32	23	33	52	35
CTTACTGATGCTAGCA	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
AATCCGCGTGTTACTC	ref_4649_fdr	3	2	4	5	6	3	3	12	5	5
CGTCTCTCTGTCACTT	ref_4649_fdr	26	20	35	45	27	35	22	33	28	26
GTGGGCGAACACGGGA	ref_4649_fdr	124	82	150	127	74	121	78	114	82	90
TTGCCTTTAGAAGTGC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTTTTTGTCCGTT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
GACCCGGGCGGTTCGT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCGATCTCGCTAG	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGGCTGAGTCCA	ref_4649_fdr	34	23	52	45	21	44	25	39	37	23
TCTCAATTTCATGTGG	ref_4649_fdr	72	52	62	57	58	49	36	51	39	52
TACGCCTATTTTGGCT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTAGTGCGCTCCG	ref_4649_fdr	23	15	23	19	15	15	16	8	21	25
CAACTCCACGGTTGAA	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCCATATTAGGAA	ref_4649_fdr	97	73	95	80	60	83	68	79	56	86
TACGCAGCCTCAGGAT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTGGGGAGTCTGA	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTTTGACGGGCGC	ref_4649_fdr	42	43	55	65	66	61	71	34	60	48
TGTGAGCTGCCAGTTC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCCTGAATATCG	ref_4649_fdr	31	14	56	42	20	19	12	31	28	35
GTTAATGTCAAGATGT	ref_4649_fdr	23	23	41	30	23	26	24	14	22	16
GGCGCCCACGCGCGTG	ref_4649_fdr	47	34	60	62	26	48	46	27	33	43
CTCGTCGCTATCCCAC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCGTCATTTGTCG	ref_4649_fdr	12	12	19	20	11	19	17	15	11	5
CCTGTTTCGTTATCTA	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTAATCTTTGTCTCTC	ref_4649_fdr	8	7	17	10	4	4	13	12	3	5
CAATTACCCTAAGGGT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAGGGACTTATAG	ref_4649_fdr	74	59	77	85	56	81	50	57	79	85
CTATTTTTGTCGGTAC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
CATTTGGACCTTGCAG	ref_4649_fdr	0	0	1	0	0	0	0	0	3	1
TTGCGTTAGACGGACT	ref_4649_fdr	15	10	16	18	21	9	12	18	8	16
TTTAACCACAGGTAGT	ref_4649_fdr	136	122	162	157	138	165	153	130	126	128
TGTTCTATGTACGCCC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTTCATTATTAATCGA	ref_4649_fdr	20	13	18	20	12	8	19	14	6	15
GGCTGCCGAAAGTGAG	ref_4649_fdr	82	58	108	74	64	81	61	77	62	85
ACACGGCGCAGGCATA	ref_4649_fdr	10	4	13	9	7	11	2	4	6	6
CCAACTCCCGCGTACA	ref_4649_fdr	12	7	7	10	26	11	6	9	14	5
TTTACGCATAGATCGC	ref_4649_fdr	32	21	62	39	34	37	26	48	27	36
TAACGTCTGCCTCTTT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCGGCGCATAACC	ref_4649_fdr	57	33	41	36	15	36	14	30	25	36
AGGTGTTAGAACGGCC	ref_4649_fdr	56	36	53	53	33	59	39	47	42	52
TTTTGGTTCCGATCTA	ref_4649_fdr	34	27	34	33	17	30	25	23	23	29
CTCGCTCAGGCCCGTT	ref_4649_fdr	14	23	21	30	9	21	11	21	19	22
CTTTGAGGGAAGGTCT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTTAATGACGCC	ref_4649_fdr	23	10	42	32	17	23	18	26	16	22
TTTTACAATGCACAGA	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
GACATCGTTTGGCTCT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCGCCGACATAGT	ref_4649_fdr	10	10	23	16	7	22	19	14	9	3
GCGGCCATAATGTTCG	ref_4649_fdr	103	94	123	134	98	101	93	99	111	92
CGTATCGATGCGGCTT	ref_4649_fdr	40	38	79	73	46	56	42	52	38	41
CAACTCCCATCATTAG	ref_4649_fdr	9	17	7	12	21	6	12	7	21	6
TGCACCCCAGCCACTC	ref_4649_fdr	14	17	23	25	16	23	14	17	21	18
TCTGTTCGACTTCAAG	ref_4649_fdr	11	9	8	9	5	10	4	3	4	5
TTCAGCCTTCGGGCCC	ref_4649_fdr	56	52	61	48	43	43	56	59	50	52
GTTTCATTTGTTATGT	ref_4649_fdr	0	0	0	1	0	0	0	0	0	0
CAGCGGTTTAGATTAC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTATACTTTTTT	ref_4649_fdr	6	14	16	13	12	9	22	17	28	10
CCTCATAGCATGCATG	ref_4649_fdr	15	8	9	10	13	13	6	8	8	7
TAGTTTGGGATTGTAG	ref_4649_fdr	25	17	28	18	23	18	20	17	17	26
GCATTTATCGCGCGAT	ref_4649_fdr	41	29	59	42	29	42	28	39	25	21
AGCCATCCACCCAAGT	ref_4649_fdr	0	0	1	0	0	2	1	2	1	1
GTGGGCCATAATCCTG	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
AGGATGTTGTGCTGCA	ref_4649_fdr	23	7	26	16	16	20	16	11	8	13
ATGCTGGGTTTTTGTT	ref_4649_fdr	26	11	39	36	30	19	26	26	22	26
TCTGTCCATTTTGGCC	ref_4649_fdr	30	35	61	42	18	33	22	29	24	32
CGGTTGCTCTAACCAG	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGACGTCCGCGTT	ref_4649_fdr	54	36	59	50	37	58	35	62	33	56
TCTGGGTTATTTCAGT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
CCGTACGCACAACATA	ref_4649_fdr	46	45	53	32	31	32	42	39	32	34
CCCTTTGGGGTGTGAA	ref_4649_fdr	29	14	30	28	18	21	19	27	26	21
GACCCTTCTGTTGCGT	ref_4649_fdr	80	66	113	94	63	84	56	98	52	93
CGCGTTTTGTGTAAAA	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
AACTTGAGTGGCCTGG	ref_4649_fdr	60	49	62	69	39	60	51	58	57	45
CGCATGTTTCAAATGG	ref_4649_fdr	134	144	163	151	112	132	136	116	134	126
TGGTTACGTGCGTCTG	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGCCATTCGAAGT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
GCGCCTTAGCAACTGC	ref_4649_fdr	49	43	67	53	45	49	39	55	58	52
CGTTAGTTTTTGTAAC	ref_4649_fdr	105	76	104	97	89	87	88	86	100	84
ACCCTGCTGAGTCAGG	ref_4649_fdr	105	71	110	121	61	84	63	82	56	94
ACCGAACATGAGCGTA	ref_4649_fdr	27	23	37	23	20	29	30	33	27	30
GGCGAATTTGGGCCAG	ref_4649_fdr	32	36	45	42	34	39	40	36	23	26
TCTCATTGCTCGTCTC	ref_4649_fdr	15	18	24	19	20	21	12	23	20	17
GCATCTGTGGACTGAT	ref_4649_fdr	49	32	80	41	55	44	50	40	55	54
CTTGGACTTGATTTGG	ref_4649_fdr	210	186	271	196	172	201	199	191	214	197
AAGAAATCCCATGAGC	ref_4649_fdr	151	124	191	169	128	149	110	154	107	141
CTCGCCATACGTCCAT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
CGTAGTAACTTATCAC	ref_4649_fdr	3	2	12	8	7	6	6	7	7	7
ACTAAATCACCCTTGC	ref_4649_fdr	76	57	85	86	62	94	64	94	52	66
TCTCGCAATAGTTTTT	ref_4649_fdr	43	22	50	56	29	35	42	31	43	31
TCTCGCTTACTGAGTA	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGGGCTTATCACA	ref_4649_fdr	23	19	35	29	27	29	24	31	24	25
CGTGATATCCAGGAGT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TCCGAAACCCGTACGT	ref_4649_fdr	20	30	29	30	25	35	29	31	25	23
ACAGTCACGGTATTAT	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTTAGTCGTACCC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
GCTCACAGGCTCCGTG	ref_4649_fdr	37	47	59	57	37	50	39	51	38	39
GCCCCTGTTGGTCTAC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
AGTTATTTGTTGTGGG	ref_4649_fdr	19	14	25	15	18	23	17	13	20	14
ACTCGCGCTTGCGGAC	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
CTACTGTCATCGCGTT	ref_4649_fdr	78	49	90	69	57	68	52	73	46	54
CGGTGTCAGGGGTGTG	ref_4649_fdr	56	67	73	75	63	54	69	71	67	61
AGTAACGGTAGTTATG	ref_4649_fdr	0	0	0	0	0	0	0	0	0	0
TCTATAGTCTTTCGAT	ref_4649_fdr	60	47	71	50	51	62	58	50	52	54
AAGTTTAAAAAGCCGT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CCTTGACAACACGAGG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GTCCAAATCAATTGTG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ATTGGATACCTTTAGC	alt_5682_new	46	42	40	39	41	42	45	43	38	41
AACCTCCACAGGTTCA	alt_5682_new	30	25	24	29	31	22	26	21	40	36
TTAACTAAATAGTGGT	alt_5682_new	32	19	31	29	22	30	34	21	29	19
TGTTACCCGTAGTTCT	alt_5682_new	5	9	11	8	7	9	5	4	8	4
GGGTGCAGTTGTCGCA	alt_5682_new	33	19	44	35	19	19	34	27	23	20
CTTTATGGGCCTCCTC	alt_5682_new	1	2	3	1	3	1	3	4	2	1
ATTGAATCTTGCATGG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TTACGGTTCTGTCCGC	alt_5682_new	10	16	16	15	11	12	15	13	16	12
TTAGCCTGGCCGTTCG	alt_5682_new	49	53	64	64	53	43	50	43	65	32
TGTTTCCGTGCTGTGA	alt_5682_new	33	36	65	45	50	38	46	51	49	35
CCGGATTTCAAATTCG	alt_5682_new	0	1	3	4	5	1	3	3	2	5
GCATTAATGTACTTCT	alt_5682_new	5	1	3	0	4	1	0	0	0	0
CCCGTCCGTGGGTGCC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TTCTAATCTGCCGCAC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GCCATGACTAATTACT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GCAGATTTTGCCTGGC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ACCTCCACGCTCTGCC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GGCTGGAACTAACCCT	alt_5682_new	7	8	9	6	13	11	9	7	7	8
TCGACGGGAAGTCTCG	alt_5682_new	13	8	8	11	16	12	10	9	21	6
CAGAGTGGTCCGCTAC	alt_5682_new	28	27	39	24	34	27	32	44	44	21
GTCTCAGTTCTATCTA	alt_5682_new	38	36	32	35	34	31	43	22	36	24
CTATCTCGTTGAGGTT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TCTTCGGTGAGCTGCC	alt_5682_new	104	81	105	90	97	94	103	84	95	78
CGGTTCTCAGGCTCGG	alt_5682_new	50	36	61	47	64	37	51	37	47	53
CGGCATCACTTACAGA	alt_5682_new	60	47	56	54	59	51	47	57	65	60
TCTGACTAGCGTCAGC	alt_5682_new	76	125	98	95	84	84	108	66	122	86
TTACATGACCCCTGTG	alt_5682_new	57	67	62	58	51	64	70	44	59	39
GCTGAGAATAAGCACT	alt_5682_new	39	26	53	37	22	35	40	35	31	35
TTCTGGATTGTTTTGG	alt_5682_new	74	71	94	70	85	73	78	61	74	71
TCCCCATCTTCGAACT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TCAGTCCGCTTGTCTA	alt_5682_new	7	16	16	13	19	7	15	9	9	15
GAGGGCTGCCTTTGCA	alt_5682_new	46	43	49	42	48	42	57	39	31	18
GGCTCGCCTCATGTAC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TACTACGACAGATTCG	alt_5682_new	0	0	0	2	0	0	0	0	0	0
CCTGGTTTTCGCCCAG	alt_5682_new	20	24	14	11	38	10	28	18	19	12
TACCAGGGAACAAGCC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CTTCCCATGCTGTGTT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
AGCATGCTTGGTATTC	alt_5682_new	75	73	70	74	77	61	69	61	67	64
TTGCCCTCGTACTTCC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CTCCCGGTCATCGGCA	alt_5682_new	13	31	10	17	22	12	34	10	34	8
TGCTCAGATACGCAAT	alt_5682_new	102	103	117	87	104	91	118	87	86	94
CGTTTAGTTAGGGTTC	alt_5682_new	42	22	30	29	43	31	32	26	29	33
TCTAGTGTCAAAATAT	alt_5682_new	14	13	20	11	9	2	10	5	14	14
TTACTATCTTCCGGCT	alt_5682_new	1	8	7	5	5	2	3	4	6	2
CGCTTGTTTCACTTAC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GACCCGGCTTTGTTAA	alt_5682_new	33	30	24	20	19	19	31	26	34	26
AGGTTCAAATTTCAAG	alt_5682_new	41	28	54	37	34	34	29	27	38	29
TGTATGTTTAGTGCAA	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CTCTGACCCCGTTAGC	alt_5682_new	20	18	28	19	14	12	15	11	17	21
CTAAGGTTAGGTATCT	alt_5682_new	41	65	51	46	44	44	59	43	60	46
CAATTAAGCTTAACTT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ACCTATCTGCTACGTC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TTCAATAGATCTATTC	alt_5682_new	15	11	29	16	22	14	14	9	13	14
CGAATTGATGAAGTGT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CACAGTAACCTATATT	alt_5682_new	48	45	39	44	47	47	44	31	50	35
GACATTGATGTACGCC	alt_5682_new	91	88	84	90	67	79	90	92	83	66
ACCAAAGTTGTATTCC	alt_5682_new	5	3	6	5	3	6	5	5	8	8
CTGCCTGACCCGGAGG	alt_5682_new	27	30	32	31	28	15	19	25	21	21
GCAAGGCATTCAAGGA	alt_5682_new	29	9	25	18	14	16	13	17	21	16
CCTTGCGAAAGTGACA	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TATAGCGGCTTCACCC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TTGGGGTCGGTCTGGG	alt_5682_new	11	12	10	2	8	4	13	7	10	7
GTTTTATCATCATCGC	alt_5682_new	48	33	50	45	36	41	46	34	47	32
CTCGTCGGACCGACTG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CGCCAATCGACGGCCT	alt_5682_new	24	45	61	41	60	37	63	38	39	53
ATTTTTAGGAAAAGAT	alt_5682_new	35	48	41	34	32	39	46	29	43	23
GTGGCTTTTATTGAAC	alt_5682_new	61	61	74	52	62	63	67	58	51	49
TCTGCGCCCGGCCTGA	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ACCATAGTGGGGTGGC	alt_5682_new	15	10	7	6	11	5	12	10	15	7
CGGGTAGAACGAGGCG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GTGCTGGTAAGCTCAG	alt_5682_new	22	23	30	37	30	21	27	27	27	25
CATACTATTCCCTTTA	alt_5682_new	25	16	31	24	12	24	13	34	20	22
GGCAGTAGGACGCTGG	alt_5682_new	43	35	51	28	36	39	31	43	47	36
GATTATGCTTTCGATA	alt_5682_new	47	38	67	57	51	56	55	55	55	57
CCGCTACTGCCTATAA	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ACCCTACCTTGTTGGC	alt_5682_new	4	15	12	9	8	8	11	11	9	6
ATTATAATTCTAAGGT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TCTTTGCATTTGGGGC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CTAGATGTAATCTTGT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TTCATGGGACGGGATA	alt_5682_new	12	6	18	12	12	6	14	12	5	13
CTATCCGCCGCCATTG	alt_5682_new	7	10	13	6	15	8	15	6	12	6
GGCATTGTCTAAAACG	alt_5682_new	30	37	34	37	27	25	28	31	33	29
CATTAGGGACCTCCGC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GCACTTGTTATCTAGA	alt_5682_new	0	0	0	0	0	0	0	0	0	0
AAGTCATTTTCCCTAC	alt_5682_new	10	11	12	9	12	9	19	16	6	8
GCCCCCCCATGTCGGC	alt_5682_new	9	19	14	14	5	14	14	12	19	21
GCATGGGATTCACGGG	alt_5682_new	138	117	151	164	121	129	128	134	129	109
ATGCGTTTAATTGAGA	alt_5682_new	47	31	57	49	33	44	47	51	48	37
GACATTTTACACACCG	alt_5682_new	36	16	32	26	23	34	19	19	17	18
GGCCCGTTTGTGATAA	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ACGATTGCCACTCTCT	alt_5682_new	15	4	14	9	6	6	12	12	13	3
TAAAGCTGGTTTTGAC	alt_5682_new	7	10	15	14	17	14	13	5	25	10
TGCAAGCGCGTACAAT	alt_5682_new	7	6	3	7	7	8	9	3	6	8
GCTGGATGACAGGCAA	alt_5682_new	124	102	131	126	118	105	124	103	122	79
CTACGCCTAATAGCGG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TGAAACACCGTGACAA	alt_5682_new	25	10	25	22	26	19	13	21	17	17
TTCGTGGCATTTGGGT	alt_5682_new	31	15	30	24	14	14	25	18	22	17
ATCACATTACTCGTCG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GTACGCTAAATAACCT	alt_5682_new	20	16	25	26	19	23	22	15	32	15
CTCGTGTTGTAAGGAC	alt_5682_new	43	29	49	38	37	41	43	28	30	35
TCTTCGCCCATTCAAC	alt_5682_new	6	5	8	7	10	5	7	10	4	7
GTGGTGGCAGGGGGAC	alt_5682_new	79	57	75	77	63	73	65	74	65	61
TAGACCCAATTAGGAG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GTATGTGCTAAAGTTT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
TTTCCTAGTGATTCAC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CGGTTTTGAATCCTAC	alt_5682_new	111	79	115	107	78	87	78	107	95	93
CCGTCAGATTGGTTCC	alt_5682_new	71	55	56	76	79	69	74	58	67	59
ATGTTGTCAAACCGGG	alt_5682_new	5	1	3	4	11	4	6	1	10	3
GCCTGGCATTAGCTGC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
AGATCGGCGGATCCGG	alt_5682_new	85	58	72	94	61	76	89	79	64	70
AGGATTACGTATGCTT	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ACGCCGCAACGCGCAG	alt_5682_new	0	0	1	2	3	1	1	0	2	1
GTCATGGTTCGGTAAT	alt_5682_new	51	61	63	70	77	67	55	68	77	70
CTATCCCGCGTAAGAG	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GGCTATCACCGTAAAC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
CACCGGTTTACATCAC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
GACCCCTATTCCTTTC	alt_5682_new	0	0	0	0	0	0	0	0	0	0
ACACATACCTCTCATT	alt_5682_new	8	12	14	11	9	10	17	8	10	9
AATTCACTATTGGTTT	alt_5682_new	197	172	227	172	193	174	180	151	193	143
TCTGACGGTCATCGTA	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GGCTTGACTACTGTGG	ref_4003_RC	56	136	69	65	128	66	158	61	121	52
GGAACTTGCCGTATGT	ref_4003_RC	31	74	42	38	53	31	77	37	104	34
ACTGGCAAGATTTCTA	ref_4003_RC	12	24	22	13	30	11	31	8	22	9
CTGACGTGCTCGAATG	ref_4003_RC	18	49	17	20	31	25	52	22	37	20
GCCGGCTGTCACTGAG	ref_4003_RC	53	98	55	37	94	47	120	42	137	44
GGCTTTACATAACGGG	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GTACTTCGGTTCAGGT	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
AAGTTACCAGCGCGTT	ref_4003_RC	4	9	7	2	11	9	11	4	14	3
TAAATTAAGGCCACGG	ref_4003_RC	28	67	25	31	48	16	60	23	68	30
TTTGTGGATACTTTAA	ref_4003_RC	7	23	15	7	12	10	27	13	24	11
GGTCTTTCTTAACTGT	ref_4003_RC	34	45	30	22	41	26	47	21	41	37
TCCAACGGGTTCAATA	ref_4003_RC	9	10	7	10	16	2	9	2	14	2
AGAAATTTCCTGGTGA	ref_4003_RC	7	12	6	12	8	10	13	7	10	4
TTGGAGTATATTAGTA	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GGCTTCGTAAAGGAAC	ref_4003_RC	147	307	169	146	299	138	296	151	330	132
GTGCATTGTCCGTAAA	ref_4003_RC	24	55	31	23	29	22	47	20	55	22
CTGTTATCGTGGAGAT	ref_4003_RC	7	20	11	9	9	7	16	9	20	11
AGCAGGTACCATTATT	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
CATCCAAGTCGGCGGT	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GAGACCCTAATCCTGC	ref_4003_RC	2	6	2	6	5	9	6	7	9	4
ACAGTATTAGACTCAA	ref_4003_RC	9	18	10	8	15	6	17	4	28	9
TTCCATATTCTCCTTG	ref_4003_RC	8	5	5	4	7	3	4	3	5	5
GGCTGGTCCGTATCGA	ref_4003_RC	15	23	17	13	16	9	24	9	28	12
CATAAGCGTTTGCCGT	alt_4003_RC	13	18	20	11	25	9	21	7	23	5
TTTCCGGCCAGCTGTC	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
AACATAGGCGCTTCCC	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GTATGGTCTTTCACGT	ref_4003_RC	17	39	32	27	32	30	49	30	35	25
GTCATCGACGGTCCGA	ref_4003_RC	19	28	33	15	39	12	43	20	44	14
TAAGCTGTGTCTGAGT	ref_4003_RC	13	18	10	12	14	18	18	12	27	11
TTCGTCTAGTATCATG	ref_4003_RC	5	8	9	7	6	3	11	6	6	5
CATGATTGTGTAAGAA	ref_4003_RC	2	1	4	1	2	2	2	2	0	1
AACAGTGCGCAGTCAT	ref_4003_RC	30	65	43	28	73	24	65	26	62	24
TTACTGGCTTCAACCT	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
ATGGCGTCCAAGGTCC	ref_4003_RC	12	21	19	11	18	8	20	15	14	6
TGAGGACTTCTTTATA	ref_4003_RC	34	55	31	31	49	39	61	26	66	36
ATAAATGTCCCTTTAA	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GGCTAGCTCTGGGCGG	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GCCGTTTGTCTCCTCC	ref_4003_RC	15	49	21	25	45	20	31	11	36	14
GATCGAATGCACCGGT	ref_4003_RC	23	29	19	18	21	11	47	19	41	12
ACGCTTTTTGTCCTAG	ref_4003_RC	9	18	10	15	20	5	24	13	19	14
GACCTCCATACGTCAG	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
TGAACTCTTTCTTTGA	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
ATAACCCGGCCTGGAT	ref_4003_RC	3	10	6	4	4	3	12	3	9	5
GATCTGACATATAAGT	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
ACTTGACGCGCTCCGC	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
TCATGGAGCTGCGCCC	ref_4003_RC	98	175	112	115	193	97	188	98	177	106
TTTTGCTACCTTGACC	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GTCCTCGGTTTAATCT	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
ACGGCCAGGGGGTTAA	ref_4003_RC	7	14	20	13	23	7	21	16	15	16
GCCCTCATAACTAATT	ref_4003_RC	19	39	26	11	26	27	27	24	34	21
TACAATCTCACTCCCC	ref_4003_RC	6	54	8	6	54	7	53	7	51	6
TTGAATGTTGCGTTCT	ref_4003_RC	47	58	56	38	52	42	65	47	82	37
GCCGGGTTCAACCATC	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
AAGGCCCGAGTCGCCG	ref_4003_RC	30	52	41	19	59	31	43	29	51	28
TGAGTTGCCTCTGTCT	ref_4003_RC	12	25	14	10	36	6	23	18	20	9
TTGCGGATAACCTTTG	ref_4003_RC	15	15	16	19	28	4	21	11	24	6
TAGACACTATTTGCCT	ref_4003_RC	4	9	1	3	5	0	5	3	5	0
TGTTTGGTGTTAGCCT	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
CTGAAACCCGCCCAGG	ref_4003_RC	23	50	32	18	55	37	54	26	68	18
CTAAAAGCAGCCCTTG	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
CTATGCTCTTTTTTAA	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
GCAGCTTCACCTACTT	ref_4003_RC	3	8	4	1	3	6	6	5	12	2
CCGGCCGTGGTCCCTC	ref_4003_RC	1	13	1	1	9	0	12	1	8	0
TGTAATATATTAGGCG	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
TCACCTAACTATACAC	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
AGTTCCTCAGTCCTTG	ref_4003_RC	0	0	0	0	0	0	0	0	0	0
TTGGTACATCCACATT	ref_4003_RC	0	2	1	0	2	0	2	1	8	0
TAGGATCTCATACCGT	ref_4003_RC	1	10	2	4	10	7	7	2	13	0
CTATAACCGTGCATTC	ref_4003_RC	1	5	1	3	4	0	7	4	6	5
GGGTTTCCTTGTGTGT	ref_4003_RC	22	56	26	19	55	25	59	17	62	17
GATGTTTCCTCTCTGT	ref_4003_RC	62	88	95	50	92	45	97	43	88	43
TGTGCTAAAAGTGGAT	ref_4003_RC	12	38	29	19	43	22	37	12	31	15
GACATTAGTGATTTCG	alt_1948_missing	24	48	22	16	35	23	47	17	34	30
AAATGCACTCCTTTGG	alt_1948_missing	10	42	7	14	35	7	34	12	47	9
GATAGACGAATTTTCC	alt_1948_missing	24	54	22	31	55	39	82	23	64	24
GTCGGTGTTAAACTCT	alt_1948_missing	10	10	6	10	15	11	16	4	9	7
TGATCTGCTAAGGTAG	alt_1948_missing	11	15	3	11	18	8	28	9	20	8
GGGATGATGCTTTCTA	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
AGCTCTATGCTAATAT	alt_1948_missing	18	21	8	11	25	7	15	12	18	8
CATTAGCGGAATCACT	alt_1948_missing	26	25	25	13	48	16	41	17	42	18
CGTTGGAATCTAGCTT	alt_1948_missing	21	31	17	17	28	8	36	10	23	12
CGTCCGGCCATTGGGA	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
CTATAAATTACATGTG	alt_1948_missing	50	69	51	47	66	43	73	33	97	27
GCGGCTGTTCGAGCTT	alt_1948_missing	21	38	18	16	31	13	41	21	39	8
TTGTGCACCCCGTGTG	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
CTATGGATATTGCCCT	alt_1948_missing	0	1	1	3	0	0	3	0	0	0
TCCGAAGGACAAGTTT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
CTTGCTTCTTGGGAGT	alt_1948_missing	4	13	5	1	6	2	10	4	5	6
TTCTCATATGGGATAT	alt_1948_missing	6	15	10	6	9	3	16	5	8	4
TTGGTTTGAGCGTCCA	alt_1948_missing	14	31	13	8	26	10	32	11	29	10
TGCGCTCATGTCTATT	alt_1948_missing	3	3	1	4	5	1	4	0	1	0
CTTGTGCCCGCCAGAG	alt_1948_missing	15	16	24	29	26	11	25	19	26	21
ATTTTAAAGTGCGTTT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
TTATGATCGAAAGTTA	alt_1948_missing	33	47	32	21	61	35	55	35	70	25
TCCGCCCTCTTGCCCT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
CATGGCATTAAGGCCC	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
GTATTTGTCTATCATT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
TGTTCCCATGTTTTTA	alt_1948_missing	9	18	10	8	17	13	21	7	24	5
GTTACTGGTCGCTACC	alt_1948_missing	2	2	1	1	5	0	1	3	6	0
TTGTCATCGTGTCTGC	alt_1948_missing	9	21	11	9	23	5	27	9	29	14
CTCTGTAAACAAGTGT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
ATCTCTCTCGACACAT	alt_1948_missing	17	37	27	25	30	25	49	21	35	19
AGGTCAGACCTAGGTA	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
ACCCGTAATACTCGAA	alt_1948_missing	1	1	1	1	2	0	1	0	0	0
CGGCAAGCTGCCGGTA	alt_1948_missing	10	11	3	5	14	7	15	7	16	8
CACTTTAAAGTTCATT	alt_1948_missing	6	22	16	14	22	13	32	9	28	6
TGTCTGAAGATTGCCG	alt_1948_missing	52	108	74	61	112	35	109	39	89	40
TTTGATACTACAACCG	alt_1948_missing	11	18	4	8	16	4	15	3	13	3
TCCGTAGATGTAATTA	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
CCTGACTTTGTCCCTC	alt_1948_missing	8	17	6	15	33	15	47	10	21	4
TATAGGACAATTGCAG	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
GCCAGTATACGCCTTT	alt_1948_missing	8	18	9	6	16	6	19	7	19	10
TCGAATCAAAGTTTCT	alt_1948_missing	6	28	14	14	24	10	24	6	14	8
TGCGTATCATCATGCA	alt_1948_missing	0	3	1	2	4	0	7	4	7	2
TGACCTCCGCGGGGCA	alt_1948_missing	5	20	13	5	20	11	18	15	26	9
CTTATTGGGAATAGGC	alt_1948_missing	26	63	48	35	52	19	64	20	71	26
ATACCATGGGTGCTTT	alt_1948_missing	1	4	1	0	1	1	2	2	3	1
GGGAAGTCATGGCTTC	alt_1948_missing	2	4	4	2	1	5	9	2	4	3
CGAAATTGATTAATCC	alt_1948_missing	4	12	4	6	7	8	8	4	3	1
CGCCAATGTCATTGTT	alt_1948_missing	1	10	9	5	10	5	12	4	17	3
GTCAACAGCCTATATC	alt_1948_missing	19	62	28	25	59	30	67	25	78	24
GTGCGAGTCTTTGATG	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
GCAGTCTCGCTTCCGG	alt_1948_missing	1	5	2	1	6	8	6	3	7	6
TTCGGCCATTGTACTA	alt_1948_missing	8	9	6	5	11	9	8	2	6	3
GGTTATTCGGTGATTG	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
TACAGGTAAGTCACTT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
AAGATGCACTCGGTCC	alt_1948_missing	2	6	5	1	0	5	0	3	4	2
CCACTCTATATGCTAA	alt_1948_missing	3	10	2	2	26	8	9	5	15	1
ATCTCAACTGGAACTT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
ATCGAGGTGTTCTTGG	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
TCTTATCCGGGCCGCT	alt_1948_missing	23	26	5	8	26	17	29	14	21	14
GTTTAAGTGGTTTACC	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
AATAGACAGAAAGGGT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
TTATCACCTCGCGGCG	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
CATAGGCGGACCATCC	alt_1948_missing	1	10	4	2	11	1	4	2	7	5
AAGTTATGGGTTCACC	alt_1948_missing	5	5	2	0	5	5	5	1	2	3
CTAGTCTCTGTTTAAT	alt_1948_missing	6	14	11	11	20	6	19	10	31	8
GTCGCACTTTTAAGTA	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
TTTTGACAAACTTAAT	alt_1948_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTTTATGCTCCC	alt_1948_missing	5	31	17	16	32	13	29	16	33	17
ATTCGGAGTCTATCCT	alt_1948_missing	18	56	28	30	48	21	54	24	53	15
CTACCGGTTGCACTAT	alt_1948_missing	6	34	8	5	42	8	25	7	33	5
CGCCCATGGCCATTAC	alt_1948_missing	4	15	4	7	3	4	8	4	11	10
CAAGACAAGCTCATGA	alt_1948_missing	9	18	14	4	22	4	18	8	16	13
TAGGTTTGGTGGGCTC	ref_1093_RC	13	34	11	9	19	13	33	15	15	11
GCATCCGTAGTTGATA	ref_1093_RC	21	57	39	13	51	34	53	17	43	13
CCGTTGTTCTTGGTTA	ref_1093_RC	39	102	56	45	99	47	80	41	101	32
AGATCCGGTCATGCGG	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TAGACTTTTGTCTGTT	ref_1093_RC	32	58	55	24	64	29	78	33	57	29
GGGAATGAGAGAATTC	ref_1093_RC	9	18	17	10	18	6	14	10	18	4
GTGGTGGATATGAACG	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TGGGTTGAACAGCAGC	ref_1093_RC	7	15	10	4	15	6	9	3	14	8
GGAAGTCTAATCTGCG	ref_1093_RC	31	55	38	31	61	35	53	28	63	21
TTCGTTCCGGAAGTCC	ref_1093_RC	110	169	119	104	151	88	186	98	160	82
ACACATGGTAACGTTC	ref_1093_RC	29	52	39	26	53	29	39	26	54	26
GATATTTTAAGAATAT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CCGGCACATGTTATGT	ref_1093_RC	65	145	94	67	174	59	183	55	166	55
TGTTTTAAATCGTATC	ref_1093_RC	0	2	1	0	3	1	5	1	2	0
TTACCTAGCGTCACTG	ref_1093_RC	5	17	10	10	24	15	11	5	14	3
CTAAGGAACGAAAGAA	ref_1093_RC	132	279	177	147	253	128	316	137	324	145
CTTGAGATTTTGCCGT	ref_1093_RC	1	6	2	2	5	2	4	3	4	4
CCTTGTACAATATGGT	ref_1093_RC	9	16	9	5	12	5	8	9	23	3
AGCGGTTGAAGATCTA	ref_1093_RC	38	66	54	32	95	46	68	33	103	32
AATTCCTGCAAGGCCT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGCAACTATATA	ref_1093_RC	45	91	73	59	87	34	105	54	94	40
CGTGAAATGCTTCACC	ref_1093_RC	13	17	9	7	13	3	21	7	23	3
AGCACAGCGTACATTA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GATGCGCGTCCATTAA	ref_1093_RC	10	26	17	9	25	16	24	15	34	15
TTTTCATATATCGCAC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GCTCGCTTAGTGTGGT	ref_1093_RC	22	55	33	29	63	37	71	30	72	23
CACTTACCCCTTGCAG	ref_1093_RC	2	4	1	1	7	2	7	5	8	0
ATCGCTGACGCGGTCG	ref_1093_RC	14	9	11	7	11	10	14	3	12	6
CTTTCAACTTGTCCTC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
AGCTTTAAGGCTATCA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CTCAATTACAACTTAA	ref_1093_RC	16	29	23	14	35	9	32	17	41	16
CTCCCAGTTAGGACGT	ref_1093_RC	10	41	11	11	35	17	37	9	33	7
TTCGTACAGTTAACGC	ref_1093_RC	3	7	3	5	10	5	9	8	9	3
ACGCCCCTACGTATGA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CCGTTCGAAGATGTGG	ref_1093_RC	14	24	14	15	22	8	36	14	32	7
GTTGACATTTCCAAGA	ref_1093_RC	33	58	31	24	77	20	50	32	88	22
CTTCTGCCGGGAATAT	ref_1093_RC	12	42	34	33	42	12	38	18	40	18
TCTATGTTGCTTCTTT	ref_1093_RC	9	19	17	9	17	5	26	7	18	12
TTCTCGCACGAAATTA	ref_1093_RC	50	95	80	61	82	54	108	38	111	54
ATTAGGGTTATTCGCG	ref_1093_RC	6	16	15	12	20	16	16	8	30	9
TCTAACACGAGGTAGC	ref_1093_RC	52	70	45	38	75	49	51	43	73	35
TCCTAAGTGCGAGGTA	ref_1093_RC	13	18	19	10	34	16	28	10	28	4
ATTGTCGTTATCAAGC	ref_1093_RC	27	54	26	24	31	31	32	24	47	26
CGAGCCTTGTGCTGAT	ref_1093_RC	11	12	8	5	22	6	18	5	18	7
GTGCAGGAGGTCCACG	ref_1093_RC	5	11	3	6	10	8	13	7	9	6
TGCAGTTGGTTACCAG	ref_1093_RC	12	24	19	9	32	15	15	6	25	15
TTTCTGGCCACTCTGT	ref_1093_RC	5	12	7	7	5	3	6	3	10	1
AGTGCCAGTTACTCAG	ref_1093_RC	29	35	34	36	58	31	61	30	56	20
CTTCGGTAGGTAAGGT	ref_1093_RC	3	7	10	3	6	5	9	10	20	6
TTCTACTGCGAACCTC	ref_1093_RC	7	24	8	8	30	7	35	10	25	11
CCTCGCCTTACCGTGT	ref_1093_RC	17	66	28	26	90	21	85	16	90	35
CCGCTACTGCAGCGCG	ref_1093_RC	9	12	10	3	25	7	17	4	14	7
TCCCGAAATTTGGCGT	ref_1093_RC	19	23	11	14	40	15	27	10	29	5
CGTGTGTAGACGTACT	ref_1093_RC	4	6	4	2	4	5	11	3	11	3
CTCACACTAACGATCT	ref_1093_RC	2	11	5	10	12	6	9	4	5	7
ACCTTAATGCCAAGTT	ref_1093_RC	4	9	4	6	10	2	5	2	5	1
GGTCTCCGTTAGCGCA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CATTTGGGTTCCCTTA	ref_1093_RC	23	63	33	25	40	31	51	21	51	39
ATTATGTGACCTTTCT	ref_1093_RC	117	160	149	119	176	111	187	110	199	89
TAGCAGGTACGTGGCT	ref_1093_RC	5	3	10	10	11	5	11	7	12	6
GTCTTGAACCCGATCT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CGGTCATGCGCGCGCA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GATGATTTTGCGCTTA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CTCTAGGTAAAGTCTA	ref_1093_RC	12	49	17	17	51	10	44	19	43	11
TTTCACGCAGTACGGC	ref_1093_RC	22	33	25	25	26	13	44	18	42	14
ACCGACCGAGCCTTCG	ref_1093_RC	0	0	4	3	6	4	2	3	7	2
AACAGTTAAACCAGTG	ref_1093_RC	30	70	31	41	53	37	80	36	79	15
TATGTTCTAGCTGTAG	ref_1093_RC	8	14	11	11	19	12	16	7	18	9
TGCTCTCAACCCCTGC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGACTGCTCCCT	ref_1093_RC	14	71	18	24	63	8	62	13	78	13
GTGTGTTGGTCATTCC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GTCTCGATATTCATAC	ref_1093_RC	13	32	19	16	31	17	32	13	31	17
CGGCTCTTACCCTGAC	ref_1093_RC	5	9	13	5	7	4	11	2	18	8
TTTAGATCTCTTAAGT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TAAACTCCCCGAGGCC	ref_1093_RC	6	63	4	4	82	3	74	7	76	2
CATGATACTGGGCTTG	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TCTGTATCGCAGTGTT	ref_1093_RC	5	14	10	3	12	2	10	6	13	6
GGTGTTTAACTTTAGC	ref_1093_RC	37	62	38	40	50	18	61	25	62	28
TTTCATTCTATCATTG	ref_1093_RC	47	91	62	48	106	56	92	62	90	43
TCCGTCTGCTTTCGCG	ref_1093_RC	5	6	0	3	5	2	3	0	8	4
TCGAGACACCTTCTTC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CTATGTTTGGGCCTCA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
ATTTTAGGATAGCATA	ref_1093_RC	5	5	9	1	14	4	6	5	9	3
CCCGGTATTTCTTTCC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CCGCCCTGAATTTCTT	ref_1093_RC	18	32	26	14	38	20	25	11	34	13
ACGATGTCCATGACAT	ref_1093_RC	62	106	79	60	121	71	100	64	109	52
TTCCAAGTTGAACCCC	ref_1093_RC	15	64	31	18	59	17	64	20	61	16
TATCCCATCTGAGCTC	ref_1093_RC	179	228	203	149	246	171	252	170	243	144
CCAGGTGTTGGGTTCA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CATAATTTCTCTGTGC	ref_1093_RC	20	40	18	22	32	15	24	19	36	16
ATCCTGCCGTATTGGA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GGTTGTTGGAATATCG	ref_1093_RC	6	14	4	5	18	4	16	6	14	9
AAGAGCACATCTTTTA	ref_1093_RC	98	158	84	101	140	88	188	88	179	98
TTCCACAATAGACACG	ref_1093_RC	41	71	49	37	68	46	88	42	70	31
TTGCCTTTATATTGCG	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GTCACAACCAGACCTG	ref_1093_RC	189	378	237	197	406	169	394	173	396	202
GGTCTCCGTTAGAAAT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GTCTGCGGTTTCTAAC	ref_1093_RC	82	158	122	98	172	93	179	70	169	89
GATTCGAGTGGTTGAA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TCGGCGTACCTTTCCC	ref_1093_RC	9	19	5	11	33	12	42	6	37	6
CTAGTCTATTTGCCAA	ref_1093_RC	6	18	10	7	10	7	23	7	22	11
TCACTTTCTTTGCTTC	ref_1093_RC	10	32	16	10	18	12	23	6	17	9
TTAAACCCATGCGTGT	ref_1093_RC	18	28	18	10	38	10	22	12	36	7
TTCCCTTGGCGTCTCA	ref_1093_RC	8	14	10	7	7	4	15	5	14	4
TTCTTTAATACCTAGC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TGCTCCTGGACTGAAG	ref_1093_RC	27	41	23	18	36	18	26	21	41	23
GCGACGTAATACGGAC	ref_1093_RC	1	2	3	1	5	0	6	2	7	2
ATCAGCAGTGCGTCGG	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
ATGGACCGAAATTACT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
ATGGTTTAAGTCGGGT	ref_1093_RC	9	25	9	11	28	9	28	5	20	7
CGTGAGGTCTTCTTGA	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
GGCTTGTTACTTATAG	ref_1093_RC	5	16	8	9	20	8	19	4	19	8
GGTTTCTTATACACGC	ref_1093_RC	30	74	39	40	64	36	84	37	91	40
TACCAATTGGTCGCGT	ref_1093_RC	10	31	14	11	16	7	12	6	29	13
CCCCGAGCACTCTGTG	ref_1093_RC	13	15	12	4	10	8	12	4	18	6
GGCTCGGTGGAATACT	ref_1093_RC	62	110	96	83	159	68	158	86	153	64
ACTCTGAGGAGAAATT	ref_1093_RC	13	22	22	16	17	15	29	17	37	16
GTTGGCGCCCTATTAA	ref_1093_RC	38	64	35	18	50	19	24	32	53	25
TTCAGCGAAGTCTCAG	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TTGGTGTTGCGCTCGT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
TCGAACGTAGAATCGA	ref_1093_RC	19	25	11	20	17	16	36	7	25	15
ACGCTTCCATAGCAGG	ref_1093_RC	4	8	2	8	12	6	4	2	6	4
GCAAAGTGAAGCTAGC	ref_1093_RC	69	88	52	57	84	59	91	45	119	35
CACTATGGTCACAAAT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CCCGCATTCCCTGCTC	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
CTCACTTTTACATATT	ref_1093_RC	0	0	0	0	0	0	0	0	0	0
AGGCTCATGATCACGC	ref_1093_RC	28	37	32	29	40	16	47	20	37	23
TTCATTGGCAAAGATA	ref_1093_RC	2	0	1	0	4	2	5	1	5	2
CGATTCCTTGCTTGTC	ref_1093_RC	30	65	42	36	65	24	64	34	53	27
AGCTCTCCGGCTTTGG	ref_1093_RC	1	9	4	1	10	13	14	1	8	3
GTAAAGGTCATGTGAG	ref_1093_RC	20	35	25	18	46	13	37	20	32	13
TTTGCAGCCCAAAATG	ref_1093_RC	3	11	5	6	5	3	3	7	14	5
TCATAATTTCTGCATC	ref_1093_RC	59	95	72	87	126	73	116	64	138	54
ATCGATGGGCGTATTT	ref_1093_RC	10	21	14	18	29	16	21	13	21	8
TGCGGGAAGCACTTGC	ref_1093_RC	48	74	51	41	72	41	79	47	104	46
TCGCCTGAGTCTTATG	ref_4684_fdr	29	22	31	22	16	27	19	21	14	26
AGCGCGGATCTCCGGA	ref_4684_fdr	13	4	21	22	10	13	8	8	7	11
AGATAGATATTACGTT	ref_4684_fdr	51	32	78	72	23	56	33	59	42	47
TGTAAATATTCAGAGT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGCCAAAGAGGTG	ref_4684_fdr	174	111	220	209	116	182	154	165	154	202
TGGCCCGTGGGTAGCT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATACCCTTTTGCGTAA	ref_4684_fdr	290	179	350	307	178	275	167	260	188	274
ATCCCAACATTGAGTG	ref_4684_fdr	42	25	53	50	31	46	29	31	37	43
CGGCCTCATCCTGAAT	ref_4684_fdr	113	49	138	105	54	97	80	124	61	81
CATTCGATCGTAGGTT	ref_4684_fdr	39	38	35	36	29	31	24	22	42	19
CTCTGTGGGAATTTTG	ref_4684_fdr	1	1	0	0	3	2	0	0	3	0
CTTCTAGAACAGTTGA	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
TCATTTGCATAAAGAC	ref_4684_fdr	411	192	458	426	240	386	212	371	273	324
GATCTAAGGGATCATT	ref_4684_fdr	32	16	28	34	13	33	14	28	27	29
TCATGCCCCTACCCTG	ref_4684_fdr	40	33	69	70	44	58	37	58	42	41
CGCCGTGGGTTAGATA	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
ACTATGCTATTGTCTC	ref_4684_fdr	57	28	84	78	25	45	21	71	38	58
GTGGCGTATAAGCGAT	ref_4684_fdr	62	32	74	48	19	48	13	48	25	48
GATAATTATCACATTG	ref_4684_fdr	79	35	89	64	37	70	45	61	32	70
AGGAGCGGCCTGCTCA	ref_4684_fdr	49	24	78	59	28	33	38	40	29	44
GTGCTTTTTTCTAGAT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
CATATGCCAATTGGAC	ref_4684_fdr	9	6	12	11	1	9	10	20	7	16
TTCCTATATGTCAAAC	ref_4684_fdr	113	82	140	114	68	104	75	104	70	113
CGGCCCTTCCACCGAC	ref_4684_fdr	41	25	37	44	29	37	33	37	30	27
CTTTACGATTTTACCG	ref_4684_fdr	58	43	86	42	38	57	50	73	37	57
TTGCTCACACCGCTTT	ref_4684_fdr	26	24	45	27	17	30	33	26	17	35
CCGGGCTACCCCCACG	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TACTCAGGCGGCTTGT	ref_4684_fdr	31	28	28	19	18	22	24	31	15	33
CCTACTGTATTAGTGA	ref_4684_fdr	9	9	18	15	7	10	6	14	10	6
TGAGCGTTCGTGCCGC	ref_4684_fdr	57	27	77	45	31	39	33	47	27	40
GAAAGGATTGCGTTTC	ref_4684_fdr	37	20	44	41	41	43	29	47	26	50
AATCTCCCGCGTCGGG	ref_4684_fdr	100	120	90	83	169	74	122	75	132	67
TGTTTTGTATGAAATT	ref_4684_fdr	67	29	72	85	64	80	35	71	45	57
ACGTAAAGGTGATTGG	ref_4684_fdr	29	11	45	27	21	32	12	24	12	26
TTTAGAACTCCCGGGT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCGACGTGATGA	ref_4684_fdr	58	31	62	62	34	38	48	53	31	49
CTCTTAATGACCATTA	ref_4684_fdr	128	62	146	120	73	122	70	149	68	116
ATAGAGTGAATTCCCG	ref_4684_fdr	134	59	181	135	70	110	72	111	60	149
TACTCGTTGCTAACGC	ref_4684_fdr	31	25	54	59	26	36	28	48	28	44
TCCACGATAAACCCGC	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TAGACACCACTGCTTC	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTCATCTCGTATTCCT	ref_4684_fdr	79	60	95	92	65	90	47	79	74	87
CTGTTAATCATGATCC	ref_4684_fdr	45	18	56	38	26	40	23	48	26	42
TTCCCGTTTTTTGACT	ref_4684_fdr	11	7	11	16	4	7	11	10	5	8
AAGTGGGTCGTAGAAT	ref_4684_fdr	53	24	52	72	26	57	42	54	36	47
GGCGGCTATGGTATTC	ref_4684_fdr	23	8	22	35	5	22	7	20	13	16
CGTCTCCCCGTTATAA	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
GCGTAAATCAACCTGG	ref_4684_fdr	105	47	131	106	44	88	50	90	49	91
CGTTTGGTGGGCCAAT	ref_4684_fdr	28	14	42	13	14	13	11	19	6	18
TGGCTGTGTACTCCGG	ref_4684_fdr	33	24	45	49	27	34	24	33	25	36
ATTATGTTCTTGCTTA	ref_4684_fdr	7	8	19	17	2	9	7	10	3	13
TGGAGTTGCCTTTCGT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTGTACGTACCCATCT	ref_4684_fdr	104	73	151	128	78	118	79	134	80	128
GCCGCCATAGATGTTC	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTATGCCGTTTGACGT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTTTATACTTGGCAGA	ref_4684_fdr	56	56	84	71	39	72	53	57	30	52
AAGCAGTCTTTAATGT	ref_4684_fdr	12	11	7	5	1	8	5	5	10	7
AAACTCTGTGTAGTCT	ref_4684_fdr	26	19	35	25	23	24	18	19	10	24
ACGAAATCTCTCATAC	ref_4684_fdr	39	39	61	73	33	53	38	52	33	55
CTGTGGCATTAGTTAT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCGTGGGTCAGTC	ref_4684_fdr	63	33	78	61	41	50	37	70	40	60
CATTAAGGCTCTAGAT	ref_4684_fdr	42	24	51	51	30	44	35	50	25	46
GTTCCGGTAACCATGG	ref_4684_fdr	116	69	118	113	59	100	71	83	65	95
TTCCTGTGATCAGATC	ref_4684_fdr	3	3	2	6	2	1	2	3	3	6
TTCCTGCGTTGGCGCA	ref_4684_fdr	27	7	20	31	15	19	14	27	6	33
TAGTGAGCTTTGCGGT	ref_4684_fdr	181	95	204	181	110	162	112	176	98	151
GCGCATAGGTTACCTG	ref_4684_fdr	0	3	4	3	0	6	1	5	2	0
TAGTCTAAGTGCTTCC	ref_4684_fdr	133	53	138	150	55	114	45	145	52	98
TCTGGTGTAACTCATA	ref_4684_fdr	122	64	121	99	56	102	68	70	58	100
CGTAGAAAGAGTAGCG	ref_4684_fdr	10	1	11	16	11	7	3	16	7	13
ACTTATTATCAATATT	ref_4684_fdr	153	103	231	236	88	180	101	160	103	155
CAGGGTTGAGTTAATG	ref_4684_fdr	16	8	10	15	10	16	5	13	6	15
GGGATGTTTGGAGTAT	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGTACGTCGTAGG	ref_4684_fdr	135	80	166	150	93	140	87	158	95	95
TAACAAACGTGCTAAG	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATATAGCCGCCGAACT	ref_4684_fdr	59	27	72	58	21	56	29	43	32	57
TAGTCCTATCGAAGTT	ref_4684_fdr	51	36	53	50	28	32	28	43	25	37
TTGGATTATCCATACT	ref_4684_fdr	42	37	78	56	38	48	52	60	35	47
TGACTTGCCTACCGCG	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGCCGTTGTTTTA	ref_4684_fdr	265	151	314	280	149	236	157	205	153	186
CCATACTAATGTCGTC	ref_4684_fdr	6	2	11	9	5	9	5	7	5	6
CCCCAAGAGGATGCAG	ref_4684_fdr	90	61	99	88	70	76	50	110	71	72
TCGGCACACCTGTTTT	ref_4684_fdr	13	32	15	8	34	8	34	16	37	13
GTCCCTACCGGGTTGG	ref_4684_fdr	81	55	99	103	71	71	74	104	67	87
GGCCTTTTTAGGACGG	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCTGATGTTGTGC	ref_4684_fdr	0	4	0	0	0	0	2	3	4	1
GGGCTCTTACATGATT	ref_4684_fdr	115	54	126	110	47	111	55	115	61	92
ATGGCTAGTTTCCTCT	ref_4684_fdr	110	46	122	111	57	105	56	106	54	84
TCAAGGTTTCCTAAAT	ref_4684_fdr	47	25	41	40	14	29	19	33	16	36
ACAACCCTTATAGCAA	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGGCAATATCCCG	ref_4684_fdr	49	39	69	52	48	57	36	73	46	60
TATGTTGCTGCTCAAG	ref_4684_fdr	212	158	313	235	122	250	167	209	160	245
CGTGGCTGTGATCCTC	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTGTGTTGCTTGT	ref_4684_fdr	115	35	165	132	52	101	49	124	62	102
TAGGCGAATATATCGC	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTAACCACGCGCT	ref_4684_fdr	24	10	25	20	21	29	11	36	16	19
TCTTGGTCCATGTCTA	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
GCGGTTACTTCTTATC	ref_4684_fdr	38	41	31	31	58	24	40	30	30	21
TCTAGAATAAGACAAA	ref_4684_fdr	11	16	28	27	14	12	3	14	9	14
TGCTACCGGGTACCTA	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TTATCGGTTCGAGCTC	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCTGACCCTTCTT	ref_4684_fdr	7	8	9	10	5	17	7	8	5	5
CCAGCCCTCTTCGCAG	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
CATTATCTTACTTGGT	ref_4684_fdr	108	55	117	107	69	107	72	129	58	105
GGCCCTGGCAAACGGA	ref_4684_fdr	8	22	16	19	13	15	14	7	20	15
AGCGGGAGATACGGCA	ref_4684_fdr	18	11	23	27	9	19	18	12	12	19
TCAGGCTTCTGCGTTG	ref_4684_fdr	29	20	44	37	13	21	32	38	14	29
CCGGTACCTCTTTCGC	ref_4684_fdr	0	0	0	0	0	0	0	0	0	0
TGGGATAAAGCGGATG	ref_4684_fdr	118	80	160	134	64	153	74	121	83	112
GGGTTTTACCGACCTG	alt_5990_new	12	25	18	23	30	24	30	12	33	11
GTAATCCTATCCGCCA	alt_5990_new	29	38	43	26	37	31	45	34	44	31
TGTTCTCCCATTAGAT	alt_5990_new	63	79	87	77	91	47	96	67	91	47
TCGGTCTGTCTCGGGA	alt_5990_new	17	20	19	11	15	9	16	9	11	17
AGTCGGGTGCGGCATT	alt_5990_new	14	15	47	24	11	31	18	30	19	28
GTTGGTGTACAGATTG	alt_5990_new	7	8	12	14	9	5	7	12	20	12
GAGGAAGCACATCTAG	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TTCTTATACAAGAAAA	alt_5990_new	13	21	18	21	18	15	18	15	15	15
ATTATTAATTACTAAG	alt_5990_new	45	41	47	33	57	49	49	46	51	38
TAAGAGTGGTAGCCAG	alt_5990_new	14	20	25	15	11	15	15	18	23	6
GTGGTCTCTATCGTAG	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TGGTTTAGGTTTTCCA	alt_5990_new	25	24	15	23	25	14	31	26	24	24
GGCACGATGATATTTA	alt_5990_new	0	0	0	0	0	0	0	0	0	0
CTGTTGTTGGTTCCTG	alt_5990_new	34	53	41	22	42	21	36	22	39	37
AACGGCCTCATTTTGG	alt_5990_new	11	13	4	5	9	8	13	6	8	9
GACGATCGGTATTGCG	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TACTCCCGTATTTCCT	alt_5990_new	25	46	25	22	53	20	61	17	49	22
TGCCATCCCGGTGTAT	alt_5990_new	18	61	29	40	46	29	45	29	55	24
ATCGTTAAGCCTCTGA	alt_5990_new	25	33	28	23	35	28	25	28	37	15
CCCTCTGTGATGTGTT	alt_5990_new	51	58	38	67	48	39	61	40	61	45
TAATCGTTCATGTGGT	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TCAAATGTCCAGCCCG	alt_5990_new	75	87	84	59	93	81	82	60	94	64
CTCATACCTGGCGCGT	alt_5990_new	11	16	16	14	27	14	20	14	25	15
GCCCTTTGTATATTTA	alt_5990_new	0	0	0	0	0	0	0	0	0	0
CACCGAAAACACCTCT	alt_5990_new	42	56	60	58	64	58	72	48	61	39
GTTGTAATTGGACACA	alt_5990_new	0	0	0	0	0	0	0	0	0	0
CTAAAATGATGGGCAT	alt_5990_new	0	0	0	0	0	0	0	0	0	0
ATCCGCGAATTGCTCG	alt_5990_new	57	84	69	56	103	62	105	63	98	78
CGTTTGCTCAGTGTAT	alt_5990_new	38	49	47	28	43	32	51	35	70	26
AGTCCACGTTCACCTC	alt_5990_new	28	34	34	26	27	20	36	21	23	18
GTTACGATCGGCTTGT	alt_5990_new	14	25	37	20	35	17	38	30	43	26
TTCTTGGTTTTTCCTC	alt_5990_new	27	47	43	20	34	35	35	31	40	35
TGACAGAGGTTTACGT	alt_5990_new	18	10	15	16	11	8	18	12	18	12
ATCGAGTAGTTTGACT	alt_5990_new	0	0	0	0	0	0	0	0	0	0
CATAGTCCTGAAGTCA	alt_5990_new	23	33	34	20	21	26	30	23	33	22
CGAGATCTGCCTGCAT	alt_5990_new	0	0	0	0	0	0	0	0	0	0
AGTGATCGTGCACCTC	alt_5990_new	11	11	12	13	7	9	13	12	5	9
GTTTATCCCTTACACG	alt_5990_new	0	0	0	0	0	0	0	0	0	0
GCCTAAAAGTCAGCGG	alt_5990_new	15	33	26	24	23	22	37	20	28	15
ATAGCTTTCATTAGAT	alt_5990_new	15	14	9	13	11	9	11	8	21	13
CATTGAGATCGCTGAC	alt_5990_new	180	200	240	207	205	167	236	157	212	164
TAAATTTGCCGTGGTC	alt_5990_new	18	28	26	24	26	28	23	17	27	14
AATCAGCCAGCCATAG	alt_5990_new	0	0	0	0	0	0	0	0	0	0
GTTCTCTGTCAACAAA	alt_5990_new	0	0	0	0	0	0	0	0	0	0
CACTGATGGTAATTCG	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TGGGGGTATTCGGTTG	alt_5990_new	49	65	48	55	62	40	63	40	68	41
CCCACTGAATACCCTA	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TTTCTGCTTATTGCCA	alt_5990_new	20	16	13	30	17	12	23	16	18	19
TTGTTCCAGGCTTTTC	alt_5990_new	28	33	34	23	23	22	36	21	47	13
TTGTACGATTTAGTGT	alt_5990_new	7	17	16	5	14	6	7	2	9	7
TAACCTCCTGTGCTGG	alt_5990_new	71	72	81	51	76	59	71	55	78	55
CTTTGATATTTCTGTT	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TTGCACCCAGTCGTAC	alt_5990_new	69	114	92	79	105	78	94	68	126	76
ATGTCGGTGTATGTCG	alt_5990_new	110	100	131	90	94	88	97	86	107	79
CTAGTTGACAGTATTT	alt_5990_new	118	133	139	132	157	124	172	110	163	106
ACTAAATCCTGGTCGG	alt_5990_new	18	28	27	23	31	19	26	14	29	22
CCGCTACATACATCGA	alt_5990_new	0	0	0	0	0	0	0	0	0	0
TAGACCTTGCATTAGG	alt_5990_new	0	0	0	0	0	0	0	0	0	0
CAATGGTGGCGATCTG	alt_5990_new	2	2	3	0	3	0	4	1	5	2
AATAAGCCGCCTTCGC	alt_5990_new	82	62	68	75	69	79	84	83	88	70
CTTATTGTAGCCGGGC	alt_5990_new	72	66	75	57	66	42	99	41	82	59
ACCACCCATATACCAT	alt_5990_new	21	26	22	18	35	23	26	21	20	18
CTCGAGGTCGTGCTAG	alt_5990_new	31	36	32	20	32	35	43	21	46	24
GTTAGCAATTCAACCG	alt_5990_new	20	30	16	19	8	16	28	15	25	14
TTTGGGAGCGTGGCTG	alt_5990_new	33	52	58	39	57	54	47	25	54	43
GTGTTTGGGCCCGCAC	alt_5990_new	240	302	280	275	278	267	295	231	341	253
TGGTTAGGAGCCCCTC	alt_5990_new	0	0	0	0	0	0	0	0	0	0
CAGCACGTTTTATGGC	alt_5990_new	82	99	74	72	89	74	95	67	119	71
TAGCGTCCGCATGACT	alt_5990_new	20	26	20	41	16	27	27	24	24	33
TTTGCTCAGGTTCACT	alt_5990_new	0	0	0	0	0	0	0	0	0	0
AGTTTGACCTCGAATT	alt_5990_new	89	104	100	106	127	82	113	77	101	84
GATGTTTAGTTGTTCT	alt_5990_new	6	23	15	15	18	17	18	15	12	16
CCTTGTGGAAGACCAA	alt_5990_new	46	55	37	24	46	32	33	23	53	21
TGTCTGTCAGCGCTGG	alt_5990_new	48	81	74	62	72	52	68	76	104	68
TACCGTCATTGGAGCT	alt_5990_new	90	84	98	65	90	72	99	56	100	63
TGGCAAAGTTTGTGGA	alt_5990_new	29	34	35	25	37	35	43	22	28	26
CTTGCGCGCGCTGCGT	alt_5990_new	28	21	18	24	22	21	17	23	18	15
CCATAGTCACACCTCC	alt_5990_new	8	12	11	6	9	11	13	7	11	5
TGCTTACCAACTTGCG	alt_5990_new	33	50	39	31	64	30	60	22	63	36
TGTGCTTGGCTGCTAC	alt_5990_new	24	38	30	19	28	32	43	20	25	24
GTTGTTCCGTCAATGG	alt_5990_new	8	9	2	6	8	7	5	7	5	7
GTTTGGCGTTAAGGAT	alt_790_upstream	14	19	13	16	20	9	18	9	19	13
GTACGTAAAGCGCAGG	alt_790_upstream	37	47	38	53	49	33	50	45	68	38
AATTCGGTTCTGTTCT	alt_790_upstream	18	40	33	16	38	25	40	23	53	19
CAGATTGTCAGCTCAA	alt_790_upstream	8	18	17	7	27	20	34	12	28	13
GTATGGCCTGACATTG	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTTATGACGTGCT	alt_790_upstream	22	40	30	37	40	25	44	17	61	13
ACGCTTAGGAGACCGG	alt_790_upstream	16	29	27	26	36	26	34	11	40	14
CGGGCAGAAGCTTGGC	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGGACTATCCGAC	alt_790_upstream	18	28	26	20	39	18	41	16	27	23
GCAGTACCGCGTGTTG	alt_790_upstream	19	34	13	11	26	11	22	17	31	15
CTCGCGGGTGTCACGT	alt_790_upstream	5	14	14	4	6	6	9	8	18	2
GAAGCGGTCCCGAGGT	alt_790_upstream	5	8	8	4	6	5	11	3	8	11
TCGGCATCCATCTAGG	alt_790_upstream	7	11	5	7	13	4	9	5	18	7
TGGCGAGTATCCAAGC	alt_790_upstream	10	9	10	10	14	9	21	4	19	8
CTCTTTCATTCATTTT	alt_790_upstream	11	15	12	13	17	3	28	22	31	5
ACTCGTAAGCCGCGGC	alt_790_upstream	6	19	11	11	23	7	16	5	16	8
CTACCAGCATCGTCAC	alt_790_upstream	19	38	22	28	44	18	36	23	36	31
TTTATCGAGACAGTTG	alt_790_upstream	1	2	6	2	3	2	2	1	5	7
AGAGTGTCCTGATTTC	alt_790_upstream	25	52	37	17	71	33	52	12	57	24
CCTCTAGGACTATTTA	alt_790_upstream	18	49	16	15	50	17	31	18	35	9
CAGGTTTACGATGGTC	alt_790_upstream	9	28	13	19	14	10	13	6	23	9
TGCGTTCGACTTTGGA	alt_790_upstream	33	54	46	43	74	43	67	27	62	40
CCGGTTGCAATAACAG	alt_790_upstream	22	66	20	32	61	31	88	18	68	22
GGTTCCTCCATGGCTC	alt_790_upstream	24	41	36	29	33	33	31	32	53	27
TCTGCTATCTATGGAC	alt_790_upstream	7	10	6	4	14	10	17	7	9	7
GAGCAGGCTTTGGAGT	alt_790_upstream	6	7	3	4	8	0	4	2	7	7
CAAGATCTAACATTGC	ref_790_upstream	32	67	31	44	49	47	60	40	72	30
TGCATGTATTCGCTGG	alt_790_upstream	9	22	8	9	22	6	13	12	19	5
AAATCCCCAGGCTCTT	alt_790_upstream	17	28	18	11	33	16	27	13	25	7
GTCTATTGCAACTGGA	alt_790_upstream	25	57	48	27	63	28	73	30	62	24
TTTTCGATGACCGGAA	alt_790_upstream	93	154	114	95	138	95	162	65	212	88
TGTTACTAAGTTTATC	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TGTCATGAGGGGGTTA	alt_790_upstream	17	27	27	20	27	25	44	24	38	21
AAGTTTTTCCTCAATT	alt_790_upstream	9	4	7	5	12	4	9	7	15	3
CGTTCGCGATTTCCAA	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGTAGTATTAGCG	alt_790_upstream	5	6	8	2	6	2	6	6	12	2
ATCCGTGGCATGTGCT	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
GTAAAGGAAACGAGAG	alt_790_upstream	0	1	0	1	3	4	4	1	2	2
CGCGTTTCTTTTCTTG	alt_790_upstream	3	11	6	5	6	2	6	2	6	2
TGTTTTGGGTGGCCGG	alt_790_upstream	51	67	55	46	77	40	104	55	101	47
CTAGGGATTTGTTGCA	alt_790_upstream	1	3	2	4	8	2	9	4	5	1
TGCAATGTGGTAATAC	alt_790_upstream	4	16	12	6	14	11	13	6	19	9
TACCACTTAATCTCGG	alt_790_upstream	37	74	48	51	87	43	90	40	86	43
ATACAGGATATTAGCT	alt_790_upstream	0	1	1	1	4	1	2	3	5	2
AAATCCATCCAGCTTG	alt_790_upstream	14	29	25	25	35	29	32	20	23	21
CACCAGTGGCTCTTTA	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
AGTCAGTCAGCGGCGA	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTCTAGTCAAAC	alt_790_upstream	148	286	147	142	300	126	300	95	320	116
GGCCTATGTCGAGTTC	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCTAGCTCGGTGT	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
AATTTTTGTACTCCAC	alt_790_upstream	26	49	46	28	51	18	58	20	65	20
CTAGACTTTTTCTCAG	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTTGGGATCTGGC	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCCCGACCTTGTG	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TTGACGTGTTTTACTG	alt_790_upstream	58	97	63	51	129	53	116	45	103	47
TTCATTGCCTTTTGCC	alt_790_upstream	64	135	95	82	179	75	132	66	157	73
CGTGCGCTAGAGTTTT	alt_790_upstream	4	3	9	4	9	3	7	2	11	0
CGTCATGGACCGTTCC	alt_790_upstream	4	11	3	6	6	8	19	0	15	4
GCGTCCAGCCTAGGAT	alt_790_upstream	16	39	17	26	40	17	35	11	46	17
ACTATCGGTATAGCTT	alt_790_upstream	9	21	11	7	20	7	19	12	23	4
CTAGCAATTATTTTGT	alt_790_upstream	10	15	9	10	24	6	14	5	24	13
GGTGGTTAGCCAAACG	alt_790_upstream	1	2	1	1	0	0	1	0	3	1
CAGCGGTCTTTCAGGG	alt_790_upstream	10	10	6	4	16	5	7	9	12	6
CTTTTCCCGATTCATG	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TTACTCCCAATCATTA	alt_790_upstream	15	59	22	15	49	15	40	13	74	17
ACGGAATGTTACGAAG	alt_790_upstream	26	41	30	15	35	16	34	24	45	13
CTAGGGCTTCCAGCCT	alt_790_upstream	17	19	22	10	13	15	25	10	35	8
AATTAGGTGGTGCCCT	alt_790_upstream	7	13	3	17	20	8	19	6	10	5
GGTTTTATCGTTACAG	ref_790_upstream	137	92	172	134	99	131	93	130	79	114
TGGGCCAGGAATGTGG	alt_790_upstream	11	17	13	8	13	10	12	2	10	7
CTGCCTGTGTTCTGTA	alt_790_upstream	9	29	7	4	22	10	32	5	32	6
CACTAACGTATGTGCG	alt_790_upstream	11	33	12	13	26	26	32	16	28	5
GTTGAATTCAGATGAG	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
GATCGTTGAAATAGCT	alt_790_upstream	13	15	18	20	20	13	15	17	26	18
GCCGACATCCGTTCTT	alt_790_upstream	14	22	11	9	15	5	15	6	21	8
CTGGGATATAAGGCAC	alt_790_upstream	107	174	126	120	214	124	227	103	198	92
ATGAAGGCGGTACGCT	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTGGCGCTCTTTT	alt_790_upstream	53	94	70	60	131	51	94	49	101	56
TCTCCTTCACAGCTTC	alt_790_upstream	0	0	0	0	0	0	0	0	0	0
TGTATCACTAAGACTG	alt_790_upstream	15	15	19	9	26	6	20	14	29	11
GTCGGTTCTTACGTTG	alt_790_upstream	8	11	13	13	28	12	19	8	22	6
GATCAATCAGATCGCC	alt_790_upstream	5	20	8	1	11	3	18	9	18	9
GCAAATTTTATTTGCG	alt_6064_new	4	13	3	7	8	2	4	6	8	1
CCGTTTTGACCTCACA	alt_6064_new	13	73	16	21	93	18	92	5	77	12
CTCTTCTGAGTCGGAT	alt_6064_new	29	46	26	21	48	27	39	24	72	20
TATAATTCCCTCGCGG	alt_6064_new	82	149	116	94	168	77	118	75	155	96
GAGATCTGGCGTATGC	alt_6064_new	55	107	83	69	106	55	134	51	112	50
AACTCCTGCTAGGCTG	alt_6064_new	7	9	11	13	14	1	13	4	16	5
GACGTACCACTTGCAC	alt_6064_new	11	27	24	12	32	21	29	6	32	19
TTTAGGATCCTAATAA	alt_6064_new	0	0	0	0	0	0	0	0	0	0
GTACGATAAGGTCTAT	alt_6064_new	61	133	99	69	152	68	134	78	141	68
CCTCTGATTTGCCATC	alt_6064_new	84	142	91	85	158	87	154	80	147	67
ATAACCGCCTCCAAAA	alt_6064_new	1	7	10	5	5	5	13	2	9	2
TGTAATTTTCTGTGTT	alt_6064_new	11	14	21	16	22	16	17	17	14	4
AGTCGCTTTTCGGTAT	alt_6064_new	12	13	12	3	15	7	22	14	14	7
CCATGCGCTTTCCGTG	alt_6064_new	23	74	20	21	95	22	74	23	79	15
CAAAGTTTATTTCGCT	alt_6064_new	26	29	23	18	31	15	28	9	35	14
GCCCTTGTCACAGGTA	alt_6064_new	0	0	0	0	0	0	0	0	0	0
GATACCATACATGTCA	alt_6064_new	31	41	29	18	43	22	46	26	76	37
GGGTCTACTCGCCTTA	alt_6064_new	7	40	16	12	43	22	35	17	29	18
CTCGACGCTATCCACG	alt_6064_new	7	5	7	6	6	4	12	2	6	2
TCATTGAACCAATGAG	alt_6064_new	0	0	0	0	0	0	0	0	0	0
GTAGTTTGCACTCCAT	alt_6064_new	38	84	38	37	95	40	109	29	89	21
TTTGCATCTCCTCGTT	alt_6064_new	0	0	0	0	0	0	0	0	0	0
CTCGGACTCCACACTC	alt_6064_new	6	18	5	11	22	16	11	7	14	7
TTAGTTGTGAACACAC	alt_6064_new	12	33	11	14	16	17	36	16	24	16
CTGTGCGTCCCTCAGC	alt_6064_new	28	66	37	28	50	35	68	40	60	32
GTCCCATTTAATCTGA	alt_6064_new	85	113	98	92	138	64	168	77	177	74
TCGTTATCCTATCCGG	alt_6064_new	8	14	11	2	16	14	20	11	16	7
CGTACGTATGGCTTCG	alt_6064_new	22	29	11	15	20	19	20	10	24	12
CGGTGGTCTAGGTACG	alt_6064_new	21	49	26	24	37	13	41	28	25	7
GCCGTGTACGTCACGC	alt_6064_new	5	7	13	7	15	3	4	6	24	7
TAAGGCTGTAATACAT	alt_6064_new	42	82	87	51	104	51	77	38	110	31
GAAGGAAAGAACCAGT	alt_6064_new	30	38	28	34	21	21	35	27	26	19
CCGTTTTGCCCTCACA	alt_6064_new	0	0	0	0	0	0	0	0	0	0
ACACAGCGGGTCCACG	alt_6064_new	28	46	23	26	47	23	43	15	41	25
ATTCAACGAACGCTGC	alt_6064_new	8	8	7	1	8	3	10	6	9	5
GAACAAGTTTTTCTTT	alt_6064_new	3	2	3	2	5	1	0	0	3	0
TCAACGTACCGTGGAA	alt_6064_new	18	45	29	21	39	30	40	18	48	26
TAGCACTTGCAACCGC	alt_6064_new	72	187	93	93	198	111	193	81	197	85
GCAAGTCTTTCTGCTT	alt_6064_new	67	84	60	52	89	38	73	52	53	62
AGCCTGCCGATTTAAC	alt_6064_new	41	59	33	32	67	51	59	35	66	25
ATGCGTGGCGCGTCGC	alt_6064_new	0	5	4	4	6	2	3	3	7	1
CCTAGTGAGACGGCTG	alt_6064_new	98	276	114	86	288	98	303	89	327	104
CTGGTCATCTACGTTT	alt_6064_new	0	0	0	0	0	0	0	0	0	0
TTCAATTTATTCCCGT	alt_6064_new	0	0	0	0	0	0	0	0	0	0
CCCTGTCCGTCGGATA	alt_6064_new	2	21	5	0	15	3	14	3	12	1
GTGGTACCCGTCCGTG	alt_6064_new	0	0	0	0	0	0	0	0	0	0
GTCTTCAACAGGGGGA	alt_6064_new	11	18	13	12	20	11	16	8	15	7
CTATTGGGCTGACACC	alt_6064_new	9	22	13	15	27	24	31	9	28	20
CCGCGTTATATCATCA	alt_6064_new	28	107	34	31	132	14	118	29	120	17
CTGGTAATGCGTTCTG	alt_6064_new	2	31	7	13	23	6	15	13	24	7
GCATGGCTTCAGGAAA	alt_6064_new	0	0	0	0	0	0	0	0	0	0
CCGAGTTATATCATCA	alt_6064_new	0	0	0	0	0	0	0	0	0	0
CAACTGAGGTTCTTCA	alt_6064_new	87	153	113	83	141	97	156	93	190	82
AAGGATTGAACTACCT	alt_6064_new	12	18	10	14	27	15	32	11	30	11
ATATTGGGCAACAAAA	alt_6064_new	52	88	72	59	92	50	107	51	118	50
AGGCATTACAAGTGTG	alt_6064_new	6	11	3	5	8	8	8	7	6	2
CGGACCGCCGAGGTGT	alt_6064_new	16	26	16	15	27	21	32	22	43	21
CTTGTTCACGCCGTCT	alt_6064_new	25	33	40	17	48	13	50	20	50	24
TTATCAGGTCTTCGCA	alt_6064_new	0	0	0	0	0	0	0	0	0	0
CGGTAACTTCTCCCTC	alt_6064_new	16	25	17	9	22	6	41	12	36	21
TTATTACTTCCTGTTT	alt_6064_new	11	14	13	12	22	10	18	8	26	7
TTACGTGAGTCGAATT	alt_6064_new	16	26	14	13	24	14	24	11	26	15
GGGCGGCGTGTCCAGA	alt_6064_new	63	99	64	45	94	65	102	59	137	47
TGATTAGACCTTTAAA	alt_6064_new	5	16	9	7	13	6	16	5	18	14
ATAATGATGATGCAGT	alt_6064_new	0	0	0	0	0	0	0	0	0	0
TTAGGCCTTCGATGTT	alt_6064_new	36	71	42	45	52	38	68	28	72	34
TCGTAGGGCGTGAGGG	alt_6064_new	26	34	33	14	25	25	36	15	35	26
TGGAGTGGTATGCCCT	alt_6064_new	20	26	31	19	26	12	30	15	48	24
TAATTGTTTTATCTCA	alt_6064_new	0	0	0	0	0	0	0	0	0	0
GTCAGTGCAGCCTACG	alt_6064_new	17	41	12	11	27	12	31	8	23	10
CCCTCCCATCATGAGG	alt_6064_new	0	2	1	2	4	1	5	5	2	2
ATATGATTCTCTGTTA	ref_4820_RC	12	2	13	23	5	8	4	15	9	9
GAGGTTAATATCTCAG	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
TTGTAGTTAGGCTACA	ref_4820_RC	91	65	136	125	59	109	64	117	58	83
TTTTGCGGCCTCCACT	ref_4820_RC	48	14	52	34	16	29	23	37	15	25
TAGCAGTCTGGTGTTA	ref_4820_RC	245	140	333	325	131	254	124	263	160	267
CGTAAATTTTCCTGTT	ref_4820_RC	4	0	3	6	1	4	1	7	6	5
CGATTTCCCTGTACTG	ref_4820_RC	48	15	47	44	21	39	33	52	25	43
CTTACAGGTGTTGAAC	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
ATATGGATCCTGCGTG	ref_4820_RC	112	70	125	131	55	91	46	102	67	88
TTCTTCCATGTCTACT	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
TTACGGCCACTTGCAG	ref_4820_RC	24	5	21	30	9	14	9	18	10	12
CTGCACCTAAGACCAG	ref_4820_RC	7	3	11	9	4	13	3	12	3	7
CGCGTTCTCTTTCCCA	ref_4820_RC	57	30	74	56	20	55	19	71	29	65
GTCTCGTTACTATCGG	ref_4820_RC	48	24	47	52	14	24	23	36	16	28
CCTCTTCTTTTAGGAG	ref_4820_RC	86	43	117	97	35	105	32	107	50	76
GTTAATCCCATATCAA	ref_4820_RC	29	20	47	50	15	31	15	40	15	31
GGTAGTGGACCTTCTG	ref_4820_RC	53	24	65	46	26	36	30	45	32	37
CTCCCCGGCTGCCGCC	ref_4820_RC	19	7	25	27	8	30	13	24	10	17
CGTATATGATTCCTAG	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
CACTTTGAGCGTTTTC	ref_4820_RC	0	0	0	0	0	1	0	0	0	0
GTCGCGCCAGTTTAGG	ref_4820_RC	15	11	20	19	14	15	13	22	21	17
TCCGCTACGGGGGCAC	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
CTATGCCTCCAGCGAC	ref_4820_RC	271	102	311	308	93	222	120	287	130	222
GCGTATGCCCGTTTTC	ref_4820_RC	44	17	49	52	29	36	27	32	32	53
CCCAGGCATCGGCGGT	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
CGGCTCAGTATTACGT	ref_4820_RC	191	100	255	207	96	208	103	205	114	187
AGCAATTGTGTATCCC	ref_4820_RC	5	3	10	5	6	3	4	3	7	7
GACAGGGGTAGCATGC	ref_4820_RC	55	33	86	100	32	83	42	86	27	65
CGTGGGTACACTTTTT	ref_4820_RC	38	16	47	58	20	47	20	35	17	35
CCGAGCACTATAGGGT	ref_4820_RC	29	14	34	21	17	25	14	24	8	18
CGTTACTTATTAATTT	ref_4820_RC	82	34	91	72	42	59	32	49	45	69
ACCGCGGGGTTGTATA	ref_4820_RC	19	10	23	23	12	19	15	23	8	17
CACTCTTAGTCTTATA	ref_4820_RC	42	33	78	66	32	52	21	67	35	56
GGAAGCTATGGTTAAT	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTTGGTCCACTT	ref_4820_RC	39	14	37	40	23	43	17	38	23	28
GTTTGCATCTCTATAC	ref_4820_RC	193	87	253	240	84	220	100	203	98	180
AACTTAAATTAGGCCA	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
ATCAAGGAGCAGAGTT	ref_4820_RC	98	33	131	121	52	99	44	103	48	74
ACTGGTCAGCGTGTAA	ref_4820_RC	77	32	106	103	47	86	37	93	33	56
TGTATTTCTCGGGGTT	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
TCAAAGCGGTGTATAC	ref_4820_RC	61	30	63	60	31	53	36	59	52	39
GGTTTGTGAACGCTAC	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
GCGGTCCCCGGGTGGT	ref_4820_RC	53	42	86	83	47	72	65	89	40	71
ATTTCTGTTGAGGCCA	ref_4820_RC	176	75	213	178	62	148	88	148	56	158
GGACGAACATCCTCCG	ref_4820_RC	257	121	362	318	117	270	121	255	132	253
AAGGCAGCTCCCGAGC	ref_4820_RC	26	26	20	24	25	12	32	33	17	20
TCGGCGGACCTGTTGT	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
AGTCTAGTGGTGTGGA	ref_4820_RC	102	46	152	107	51	103	60	96	49	102
GCTGCCACATCATACA	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
ATAAGCGTTGATGTAG	ref_4820_RC	63	26	78	66	24	67	26	44	26	64
TCGCGATCAGTACGAA	ref_4820_RC	56	25	50	56	32	42	24	54	34	55
CAACAACCGTTGCAAT	ref_4820_RC	16	7	29	26	16	24	12	19	11	17
CTCGGGGTGAAATGCT	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
AAATAGCCAATTCGCG	ref_4820_RC	554	240	628	530	227	494	239	469	239	431
CAGTTTAATCTTTTGG	ref_4820_RC	147	57	182	157	56	132	56	148	56	149
TCAGGGACACCGTCGT	ref_4820_RC	49	20	52	47	25	37	22	47	23	44
ACCGCACAAAAGCGAG	ref_4820_RC	423	198	489	384	222	356	217	412	230	362
TAAAGCTATAATATTT	ref_4820_RC	20	12	16	21	8	10	10	12	6	17
CCGTAGTTCCGTCTGA	ref_4820_RC	78	54	135	94	50	94	60	104	48	79
GGGGTATAAAATGGTA	ref_4820_RC	148	63	212	153	77	176	80	159	80	114
CGGGCGACTCGGACGA	ref_4820_RC	100	31	109	81	22	84	32	67	26	95
TTTGCAGACCTTTCCT	ref_4820_RC	14	2	9	11	2	7	4	4	4	5
AAAGCGTGTCTCAGGC	ref_4820_RC	47	8	62	63	16	49	21	53	16	60
GAGCTACGACCTATAC	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
CCGTGGGGGCTTGGTT	ref_4820_RC	26	11	36	28	16	29	16	20	22	36
GCTCACTCTCTGTGTC	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
GGTGCGGCCCATGGCA	ref_4820_RC	177	86	209	177	95	202	84	164	99	151
ATACATTTTGGTAGAT	ref_4820_RC	59	31	88	60	17	58	31	64	18	64
TAGCTGTTGTATGGCC	ref_4820_RC	86	34	120	100	28	67	47	82	53	73
CTTTTTGTTCTCACAG	ref_4820_RC	108	41	125	125	57	98	47	128	48	97
TCCGGTCCTCGTTGCT	ref_4820_RC	31	40	37	37	21	22	39	15	42	13
AACTTGATCGACAGCA	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
CCCGTAGTCCTCCCAA	ref_4820_RC	61	20	94	62	19	58	35	75	24	55
TCTGGCCTAACTTGCG	ref_4820_RC	188	90	204	191	74	165	70	147	81	143
AAGCAGTCTGGTGTTA	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
CTACTAATTCGGTATA	ref_4820_RC	50	26	50	55	23	49	17	40	13	26
CTTTTGGTGGTGGGGT	ref_4820_RC	18	8	44	20	7	20	13	29	14	18
CGCTTAGTCACGATTT	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCAAGGTCAGTC	ref_4820_RC	84	32	95	81	41	63	43	74	42	67
GTTGGTATCGCGGATG	ref_4820_RC	226	103	279	239	122	244	106	226	103	211
TACGATAATACCAATG	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
CGTGCATGGGAGTCTC	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
AGATAAGTCCTGAACA	ref_4820_RC	318	133	386	316	144	281	149	278	145	249
TGTATCCCCGTTCGGG	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
AGTCATTTTGTCAACT	ref_4820_RC	24	10	26	16	13	16	8	21	2	8
AGTCTATATAACGGCT	ref_4820_RC	721	364	827	802	345	668	348	679	335	630
ATTCGCCAACAGTTCT	ref_4820_RC	24	15	28	17	7	16	10	16	12	14
AGCGTCTATCACAGCC	ref_4820_RC	16	3	12	4	4	6	7	8	5	13
TCACCCACCGCAAAGT	ref_4820_RC	28	9	33	27	13	30	12	15	18	31
GAATCGCATGCGAATT	ref_4820_RC	138	52	145	135	52	102	52	129	65	107
GTTGGTGCTATATCGG	ref_4820_RC	53	25	65	36	24	40	25	51	26	36
TGAGCTTCAGTTGTCG	ref_4820_RC	73	27	79	71	32	82	39	58	33	56
AGTGGGCCCAAGTGTT	ref_4820_RC	24	12	37	36	15	27	22	26	20	25
GTTGCGCCTCATCTGC	ref_4820_RC	11	7	13	13	2	8	5	16	10	15
AAAAAGATCGCGGATG	ref_4820_RC	43	22	64	42	12	45	21	43	17	35
CTAGTTCATTTGCATA	ref_4820_RC	110	46	127	106	53	84	64	86	63	84
TAAGCTGTCTTCCTGG	ref_4820_RC	125	59	144	117	54	128	64	119	57	115
AGGTAGGCTGACAACA	ref_4820_RC	110	32	137	122	55	105	53	96	43	85
TGTTTTGTTTTGCATC	ref_4820_RC	89	26	88	90	37	65	40	54	35	66
GTGTAAGTCTAGCTAT	ref_4820_RC	142	77	219	192	79	180	113	184	99	145
AGACCGGTTCGTGTGG	ref_4820_RC	121	53	117	92	67	94	58	71	69	89
GTATCACATTAATTAC	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
ACGGTCTTAATGGTTA	ref_4820_RC	0	0	0	0	0	0	0	0	0	0
GTTCCTCCAGAGCGTT	ref_2950_RC	95	106	83	85	97	62	108	68	78	63
CACTAACAAGCTTCAA	ref_2950_RC	169	194	207	192	207	172	212	182	225	146
TTATCATTTGTATCAA	ref_2950_RC	7	9	19	7	15	12	7	10	30	6
TTTTGAGTTGCACGAC	ref_2950_RC	12	21	23	18	26	19	22	23	28	14
GCCCAACTTAATCTAT	ref_2950_RC	31	41	41	32	34	29	33	31	51	23
AATCTGTCTTTGACCG	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
GCCTTGCATCCATGAG	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
GTGACTACTGCGATCC	ref_2950_RC	124	111	153	112	108	99	120	99	101	121
AGGCATCAGTACTCCC	ref_2950_RC	24	36	34	33	34	31	40	25	36	23
GATCTCGCAGTTATAG	ref_2950_RC	59	60	57	52	58	39	53	36	40	35
AGCGAGTTAGCTGCGG	ref_2950_RC	11	10	15	11	14	8	14	16	14	11
GCGTGTACGCGGTCTC	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
CATGTTCTGTCCCCAG	ref_2950_RC	36	46	34	47	38	44	32	22	34	36
TATACCTTGGCCTTAG	ref_2950_RC	70	114	100	103	109	96	139	73	108	86
GCCTTGCCCTAAGTGG	ref_2950_RC	0	2	5	3	2	3	7	2	4	2
AAGTCACACTTAGGAT	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
GCACCGTACCGCTTTA	ref_2950_RC	19	26	21	24	29	22	26	20	30	18
GGTTCGTTGTTTACAT	ref_2950_RC	46	47	63	57	67	56	52	52	66	46
ATTGATCCATTTGTAG	ref_2950_RC	30	16	28	24	25	21	23	23	25	18
GCGTGGCTCCTTACTG	ref_2950_RC	125	108	123	113	101	103	144	116	103	101
GGGTGGTGTTTGGTCA	ref_2950_RC	19	25	21	18	11	17	19	13	20	11
CCTTTCAATTAACGAG	ref_2950_RC	46	50	58	33	32	33	43	40	50	34
TTGTGGGGTTGCATCG	ref_2950_RC	16	28	21	21	28	18	33	18	22	15
TTACGCAACGTAGGGT	ref_2950_RC	17	18	25	15	18	11	13	15	22	11
ACGAACGACACGGACG	ref_2950_RC	13	16	13	8	11	13	11	13	7	10
TGGGTTAAATTGTATA	ref_2950_RC	64	49	54	41	68	66	70	61	68	49
CATCCGTTCCGGGGCT	ref_2950_RC	16	20	15	17	18	19	15	14	33	10
CACAAGGTGTCGTACG	ref_2950_RC	47	77	66	51	71	53	78	56	96	55
GGTAATAAGCTTTATC	ref_2950_RC	231	235	332	250	251	220	278	209	312	223
CGCTCGTTTCCCAAGC	ref_2950_RC	83	98	102	94	111	77	119	77	120	85
TTTGTTAGTTCGGGTC	ref_2950_RC	4	6	2	6	5	6	8	4	5	2
CAGAGAAAACTTTGGA	ref_2950_RC	42	49	46	25	43	29	54	31	48	39
GGAGCATAGGCGTTTT	ref_2950_RC	79	69	85	66	88	77	84	78	104	78
GGATGGATAAATGGAT	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
CAGCCTAAGCGGTTTT	ref_2950_RC	13	56	18	15	62	12	72	15	45	12
CCCTAAATCACGTTAT	ref_2950_RC	91	99	116	93	110	92	100	72	103	83
TTTATTCAGTTAGTGG	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
CGACATTAGTGACGCC	ref_2950_RC	12	18	12	12	18	11	11	8	19	12
CATTTTTTCGACATCT	ref_2950_RC	25	29	30	21	34	22	18	28	38	18
TGTGCCCGAGTTTGTC	ref_2950_RC	41	31	45	35	39	35	44	31	48	22
TATGTAGGTCTGAGGC	ref_2950_RC	16	21	19	15	11	19	19	14	20	20
GCTGCAAGAATCCTCG	ref_2950_RC	51	49	68	50	58	64	57	48	61	54
GACCCCGGTCATATTT	ref_2950_RC	11	33	21	19	23	11	22	18	18	20
CCTTTTTAGTGCTTAT	ref_2950_RC	12	20	12	19	28	9	25	15	42	18
CTCAAGCACAGTTGTG	ref_2950_RC	29	52	47	50	43	44	65	39	58	49
TATGCCTTTTGGTTCG	ref_2950_RC	4	4	0	2	5	14	5	6	6	6
CCAAGTCGATCAATTT	ref_2950_RC	4	1	2	2	1	0	1	2	3	4
GTATCGCTCCGGTCCT	ref_2950_RC	91	85	118	77	90	109	103	93	118	87
GGAGTTGTGTCCGTAC	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
CCATCCGTTCATCCCG	ref_2950_RC	1	0	0	0	0	0	0	0	0	0
GGTTCTTCCTTTGTAC	ref_2950_RC	39	44	39	40	37	23	43	29	50	34
ATAGCTCTCTAGTGTT	ref_2950_RC	33	36	48	32	39	25	50	26	34	23
GCTCTTCGAGTACCCG	ref_2950_RC	0	0	0	0	0	0	0	0	0	0
TCCTGTTTACCGCCGC	ref_2950_RC	31	32	24	21	24	19	33	24	35	28
GATTATAACTAGGGAT	ref_2950_RC	91	113	114	77	104	88	113	76	131	80
CACCCTTGATCAATGT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCTGGAGGCTTGA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAGAGGAGTAGTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CATGGCTAATAGGTGT	ref_1117_fdr	26	21	39	21	23	26	12	20	24	22
TTGGCCAATTATGCGA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CACAACGATAATAAGC	ref_1117_fdr	7	8	21	11	15	12	22	13	11	17
GGTTGCTGGTTGCACT	ref_1117_fdr	14	25	28	24	22	11	27	31	29	21
GCATCCGTCGGGACGG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGTAGTTGAGCAC	ref_1117_fdr	78	93	88	82	99	54	110	83	87	88
CGTTTTTTTAATAGTG	ref_1117_fdr	4	3	5	5	4	3	2	4	3	5
TCTAGGGTGCCGCTGT	ref_1117_fdr	61	46	81	72	39	49	51	52	44	47
TATGAGTGCTTGTAAG	ref_1117_fdr	25	24	37	28	15	31	27	27	20	17
TGATTTTCCACTGAGA	ref_1117_fdr	28	22	20	25	27	23	19	19	37	24
TTGATTACTAATCCCC	ref_1117_fdr	174	95	192	119	88	153	99	150	142	133
GGTGGGTACTACGATA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGGACCGAGTAAACTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
AACCCGTAGCGCCGGT	ref_1117_fdr	122	99	139	115	81	96	100	118	109	109
TATATTGATAGTGTCG	ref_1117_fdr	17	19	27	27	21	25	32	27	14	20
TCAAGGCCATCCGTAA	ref_1117_fdr	60	39	72	55	48	47	52	64	56	39
TTTGGTGCGCTTGCTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTCGCCTTTGAAA	ref_1117_fdr	2	5	3	3	3	3	1	5	3	1
TGTCAGTAGCCTACTC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CATATATGTTACCCCC	ref_1117_fdr	15	15	30	17	15	20	12	10	19	15
TCTCCCTAAATTTTCT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GAAAGCTCTCAATTCT	ref_1117_fdr	53	50	81	61	48	63	52	72	53	43
ATACAAGGTGGAGGGG	ref_1117_fdr	27	20	37	29	34	30	41	37	31	34
GCTTTCCTTCAAGTTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGTGCAGATCCCC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCCCTCTGCCAG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGTAGCGTGGCCT	ref_1117_fdr	75	75	121	96	44	90	80	70	90	97
CCGTAATCGGTCATCT	ref_1117_fdr	81	52	85	78	55	75	47	40	56	55
CGTTCACGCGGTGGTC	ref_1117_fdr	33	27	37	44	33	50	36	39	30	26
GGTAGCATCCGAGTGA	ref_1117_fdr	292	237	400	306	213	273	230	297	211	253
TTTTTCGTGGAAGCAC	ref_1117_fdr	4	1	3	3	4	2	6	9	2	7
GTCCCCGTTCGATAGT	ref_1117_fdr	5	19	4	5	20	5	28	2	18	1
GCATTATGAAGTTCTA	ref_1117_fdr	16	7	15	13	9	7	16	12	11	13
GTAGGAATTCAACGAT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCAACGTGTTTGCCCC	ref_1117_fdr	1	6	2	5	5	5	7	1	4	0
TTTCAGAGGCGTTTTA	ref_1117_fdr	32	23	28	30	22	20	25	35	34	28
TTTGATTCGTGATCAT	ref_1117_fdr	105	119	125	89	101	90	118	78	105	68
CGGAGTCCATCTCAGT	ref_1117_fdr	1	4	2	4	5	0	5	5	4	2
CTAGCGACGGGATTCT	ref_1117_fdr	1	2	6	2	0	3	0	3	1	0
TCCGACCACGCAGGTG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCATTGCTGTCACTTC	ref_1117_fdr	58	65	73	75	67	56	51	60	46	67
AATGTCCGCAATGCCA	ref_1117_fdr	19	25	20	22	11	24	16	25	14	17
GCAAGTTCGCGGAACT	ref_1117_fdr	1	4	2	1	1	5	5	3	2	2
GTGAAGTCGCTACTTG	ref_1117_fdr	121	75	108	121	92	115	101	88	96	95
GGGGTTACAATAGTAA	ref_1117_fdr	27	15	32	32	28	30	22	20	19	26
CGGTCCACACGGATCT	ref_1117_fdr	4	7	8	7	5	4	11	5	5	8
TTGACATCCACCAGAA	ref_1117_fdr	22	36	41	38	34	38	36	39	32	30
CTTTAGGTAAATAAGT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCGCACTGAGCGTTAA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CCTACGCGCCGACGTT	ref_1117_fdr	83	78	129	103	109	93	85	95	82	98
TACTAGATCACAGTTA	ref_1117_fdr	14	14	24	18	13	13	10	23	17	20
ATGCGTTGTGTCCAGA	ref_1117_fdr	59	65	82	57	57	61	53	62	53	62
CGTTTGTGCATACGTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGGCATCCATCGG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTTCGCTGTTTAT	ref_1117_fdr	75	59	85	57	53	73	64	70	77	67
AGATGATTCTGGCCAG	ref_1117_fdr	24	22	28	17	23	30	15	24	16	17
TGTGTTTTATATGCTA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCACAGATTTGGG	ref_1117_fdr	53	51	70	57	60	43	50	44	56	38
TGGTGCCCGTAGTCTC	ref_1117_fdr	26	16	31	14	25	19	17	18	19	11
TCCGTCCTTATCAACC	ref_1117_fdr	3	1	5	3	1	2	4	1	1	2
GCTTTTGCGTTCCATT	ref_1117_fdr	89	67	93	75	81	72	73	69	91	53
TCAATAAGTATCCGTC	ref_1117_fdr	35	33	34	42	30	32	33	39	43	36
ATGACATCCACCAGAA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GCGGATGGATAAGTAC	ref_1117_fdr	97	69	93	91	74	75	88	69	75	51
CGAGTTACCTAAAATA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCTTACCGATGTCTAT	ref_1117_fdr	12	21	20	11	20	18	13	16	15	17
CCTACGTGCTTGAGCT	ref_1117_fdr	12	9	9	12	12	6	14	6	10	11
GCAGCCAGTTTAATAC	ref_1117_fdr	3	10	14	11	9	12	10	8	13	5
TTCATGCTGTCATCGG	ref_1117_fdr	97	57	107	86	88	84	66	88	73	83
CGGCTAAGTTTGGTGT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCATCCATAATTT	ref_1117_fdr	86	77	98	102	71	83	71	78	86	99
TGGTTATCAGTATAGT	ref_1117_fdr	24	26	25	34	14	35	22	26	19	26
CATCATGGGCTCTCCA	ref_1117_fdr	2	0	1	1	0	1	0	3	2	2
TACTGGAGTACGTCGG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGCCCCGATATTC	ref_1117_fdr	31	23	35	34	33	27	25	27	29	20
TTAGTAGGATGTCCCG	ref_1117_fdr	19	13	29	33	14	24	19	12	19	14
CTTTTCGTCGCCTTTA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTGTACCCTAATT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCAGACGCCGATC	ref_1117_fdr	104	62	110	100	75	91	64	81	101	64
GTTGATTGGTATAAGC	ref_1117_fdr	61	46	66	58	47	39	52	42	48	50
GTTGTACGGTGCGTTA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGGTCTTGTAGAG	ref_1117_fdr	0	1	0	0	0	0	0	0	0	0
TGCCCTATCCCTCACT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCCGGCTTTGGGT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CATCTATCTGTGCCCT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTAATCAGAGGGTCTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTCTACACCTTCT	ref_1117_fdr	92	148	123	95	132	89	127	93	117	92
ATATGCTGTTCCTCTA	ref_1117_fdr	71	63	72	72	58	69	41	57	64	77
GCTGTTGCTTCGGTCA	ref_1117_fdr	44	48	66	43	44	27	40	26	38	30
CATTTTTTGCCGGTCC	ref_1117_fdr	123	80	121	118	91	110	110	99	91	107
TCATGATCTGGAATAT	ref_1117_fdr	9	4	8	13	6	8	12	13	9	8
GGTAATGATCCTTGTA	ref_1117_fdr	10	25	12	10	22	11	15	7	17	7
GCACGAAGCTACTTGG	ref_1117_fdr	52	38	66	57	53	46	37	50	49	52
TGATATAGCTTCAGAT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGTCGCGGGGCAC	ref_1117_fdr	107	103	117	120	129	111	120	93	133	86
TGATTATACCTACTGT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CGGGCCAGTAACATAG	ref_1117_fdr	84	80	111	89	80	97	81	89	78	71
TGCTTACCCACTGGCG	ref_1117_fdr	148	133	176	148	149	150	150	134	148	132
GCCTTCGCGGCCACGA	ref_1117_fdr	9	16	10	18	10	8	16	10	8	11
TATCCGCTAAGCAACT	ref_1117_fdr	12	7	24	10	9	11	11	17	15	10
ATCGCAAATTGGAGGA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CACCATACGCCAAGCG	ref_1117_fdr	12	13	19	13	18	9	14	8	14	14
CTAACGAGGTCCGTTC	ref_1117_fdr	471	443	585	589	474	489	470	546	420	470
GTAGAGCCGATCTCGA	ref_1117_fdr	141	92	155	113	97	138	115	108	119	128
CAGAGTACCCTATTTG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GCGGAGATGACACGGT	ref_1117_fdr	0	1	2	0	2	0	1	4	1	2
AGCTATGGTTGGAAGG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GAGCAGAGTGGGACGA	ref_1117_fdr	37	30	58	32	48	30	35	30	39	42
CCCTTAAACAGGCTTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCTTGAATTCGC	ref_1117_fdr	31	23	43	44	29	31	33	26	34	23
TATTGTCCCACGTATG	ref_1117_fdr	9	13	12	8	11	12	10	12	17	7
GTATTTCGCTCACACA	ref_1117_fdr	22	18	30	20	13	29	15	21	18	24
AAGGCTATATGTAGCT	ref_1117_fdr	18	14	28	19	13	11	21	8	13	10
CCTGTCCTGGCCCGTA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGTTGCAAAAGG	ref_1117_fdr	27	12	25	33	24	16	27	26	19	14
CGTTATTGTGCAGTCC	ref_1117_fdr	29	25	28	25	33	17	22	25	14	18
TTATATGTCATCCATT	ref_1117_fdr	8	8	10	2	8	18	8	10	12	8
CATCAGATCGATCTGT	ref_1117_fdr	6	4	4	7	5	3	3	2	4	0
GATTTAAACTCACTCT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTGATTAACTAAT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTGAGTTCTTGCC	ref_1117_fdr	14	7	17	6	6	10	6	18	11	11
CTCGCATCGCGGCTCT	ref_1117_fdr	8	14	7	10	10	11	8	10	16	11
TGATTAACGGTTGACT	ref_1117_fdr	17	16	22	24	15	27	13	21	11	18
ACATACGGAACCCCAT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTTAAGGAAGCGGAGA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAAACCCCTTGCT	ref_1117_fdr	54	61	57	73	37	42	51	31	43	42
ATTCGTTACGTGTTAC	ref_1117_fdr	45	50	71	58	49	54	44	59	48	42
CTCGCCCCGCGTGGAT	ref_1117_fdr	31	24	29	31	26	33	32	34	31	16
ATTGTAGCTTTTCGCC	ref_1117_fdr	25	5	28	33	17	18	17	21	23	16
CCGAAGCGACCTGCAT	ref_1117_fdr	31	38	23	32	26	32	38	31	27	17
TTGCATGTAATGTAAA	ref_1117_fdr	13	13	16	13	4	7	9	14	15	12
TTCACTGCAACGTTTG	ref_1117_fdr	22	14	22	21	26	19	22	21	15	21
CTTCTAGCTGGCTAAA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCACCTTTGCCTT	ref_1117_fdr	31	35	61	53	45	52	45	49	40	44
TCTCAAAGGAGGCTCA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TATCGTGATATACGAT	ref_1117_fdr	20	18	21	18	9	11	22	11	15	15
TTGGTGTCTTCTATCG	ref_1117_fdr	40	34	54	62	37	34	42	42	30	37
GTTCCCCAGAAGCCTC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGGGTGTTGTAGC	ref_1117_fdr	14	14	16	17	14	12	9	8	14	9
GTAGCTCGTTTACCTG	ref_1117_fdr	26	32	70	37	41	32	43	37	40	38
CGTTACATGCCTTCCC	ref_1117_fdr	50	32	39	41	37	40	36	42	30	38
ATTCCGTGGTGATTAC	ref_1117_fdr	59	46	91	63	50	49	75	76	64	56
ACTGGTACTGGGGCTA	ref_1117_fdr	9	13	34	25	24	13	17	12	23	21
CGTGTGCTGCGTTGTG	ref_1117_fdr	12	10	16	18	8	16	15	16	10	18
ACTCTTCGGGGGCCGT	ref_1117_fdr	119	103	141	121	94	108	116	127	86	109
TATCCTATAAGTTCAG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTGAAGCGTAGGGGAC	ref_1117_fdr	91	57	130	123	82	101	74	92	84	84
AGTGATATTGGGATCG	ref_1117_fdr	159	145	221	172	142	159	188	143	151	120
TGCTCACATTTAAAGA	ref_1117_fdr	219	227	280	237	256	244	240	194	264	183
GAGGTCCAGAATACTG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTTCCTATTAGA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCTACTGTTTGGCTGA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CATCGTCACTGTTTGC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGAACATTTCGTTTCC	ref_1117_fdr	81	84	114	87	85	94	93	71	97	88
AAGTCAACCTATCTGA	ref_1117_fdr	17	25	20	22	14	15	20	11	21	17
GCCGCACACGTCCGGG	ref_1117_fdr	37	41	49	55	46	36	45	46	47	35
CTTGCTAAGGGCTGGT	ref_1117_fdr	42	36	46	38	27	43	35	36	28	40
AATCATCATTTGCAGG	ref_1117_fdr	37	39	69	54	34	39	43	36	40	37
AGCTTACTTTGGTTTC	ref_1117_fdr	124	83	133	104	74	98	87	96	93	86
GCTCTTTGTAAACGGA	ref_1117_fdr	22	31	34	29	27	42	25	26	34	35
GATCAGATACGTATGT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GATCGTACATATTTCA	ref_1117_fdr	24	21	25	23	36	28	23	22	31	25
ATGCCAGGTTCAGATC	ref_1117_fdr	18	23	17	26	19	25	24	18	24	22
TAGTATTTGCAACTCG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAACGTCATTGCC	ref_1117_fdr	89	79	127	108	82	82	115	123	77	103
CACATCTTTTAAAACG	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATTGTGATATCC	ref_1117_fdr	7	15	15	15	12	11	12	6	3	11
TGTTCACTAGCCCATT	ref_1117_fdr	16	11	17	13	10	11	10	12	11	10
AGGTCAATGGGTCCCT	ref_1117_fdr	9	7	11	12	11	7	11	12	20	10
GAGAATAAGGAAACGC	ref_1117_fdr	82	38	88	67	53	62	55	56	55	50
ACACCCTATGCTTATT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CATTCAAACGCTTAGC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CACGTATGACCGCTTT	ref_1117_fdr	0	0	0	2	0	0	1	1	0	0
GCCGGTCGATCCACGA	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTATTACGATTTGAGG	ref_1117_fdr	24	27	27	32	16	19	16	17	23	16
TGTGGTCATCAATACA	ref_1117_fdr	23	15	38	35	15	19	20	24	26	11
GTATCACATAGCCAGA	ref_1117_fdr	25	9	31	36	17	14	19	23	17	23
CACGCCTGGATTGGAC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
TGATGGTACCTCTGGC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTATCGAACATGCTAT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GGTGATCGCTCTTCTT	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
GTGAAGCCTGCTCGGA	ref_1117_fdr	56	47	71	44	51	42	55	48	64	38
TGCGCGCTGTAATCCG	ref_1117_fdr	68	41	74	83	40	57	37	61	53	58
GAGTCTGTCTTCCGTA	ref_1117_fdr	75	74	91	62	83	73	73	62	63	60
GCGGTTTCTTTTAATC	ref_1117_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGGTTTCGTGGCG	ref_1117_fdr	184	159	240	223	150	199	160	181	171	191
GCCAATTGCATTAGGA	ref_671_RC	2	0	2	3	1	2	3	9	6	4
AATAATAGGTATGTAG	ref_671_RC	25	14	29	18	3	25	12	27	15	23
ATTGCAAAAGCCGAAG	ref_671_RC	114	48	162	130	55	125	81	97	72	105
CCGTAAGCGACGTTTG	ref_671_RC	2	0	6	2	1	3	1	2	0	3
GTACTGGCTCTTTCTT	ref_671_RC	0	0	0	0	0	0	0	0	0	0
TCCCAGTATCAGTAGT	ref_671_RC	43	57	33	29	53	25	49	26	53	24
GCTCCGTGAATAAACT	ref_671_RC	0	0	0	0	0	0	0	0	0	0
GCTACCGGCTTCTTCT	ref_671_RC	64	27	68	64	45	75	28	60	38	56
ATAGCGTTTAGCAAAG	ref_671_RC	1	1	2	2	0	3	0	0	0	2
AACCTTCTTGACAAGG	ref_671_RC	22	11	17	35	8	16	18	16	9	18
ATCGTATTGATAGCGG	ref_671_RC	51	22	55	54	24	49	22	56	25	50
TGCCTGCATATTGATA	ref_671_RC	15	7	23	22	4	9	7	15	7	11
CGTTCGGGTGTTGCGG	ref_671_RC	7	0	14	8	3	6	9	5	3	6
AAAACGCGCAGCCTTA	ref_671_RC	0	0	0	0	0	0	0	0	0	0
GTTGTTTTCAGTCTTG	ref_671_RC	0	0	0	0	0	0	0	0	0	0
TGTAGCGACTCACTCT	ref_671_RC	56	21	66	80	36	71	33	57	35	66
ACGGATTTAGCCCATT	ref_671_RC	84	32	91	82	42	53	34	73	34	59
AGCTTTCCTGACGCCC	ref_671_RC	0	0	0	0	0	0	0	0	0	0
CATTGTTGAAGCGTCG	ref_671_RC	28	11	32	25	10	22	10	17	15	21
CTCTCCCGTACCCTCT	ref_671_RC	0	1	1	6	1	0	0	5	1	1
ATGTAAAGTCTGCATT	ref_671_RC	50	19	61	69	17	39	24	55	27	47
CCATAATTACCTTAAT	ref_671_RC	0	0	0	0	0	0	0	0	0	0
TTATTCTTCCTGCTAA	ref_671_RC	100	72	130	110	57	104	61	95	62	71
TAATGGTGTCAGACTG	ref_671_RC	13	12	18	25	5	12	5	21	9	12
TGGCACACATCGGAAA	ref_671_RC	120	46	153	112	85	118	53	122	55	95
CAGTACCAAGACTTCT	ref_671_RC	157	74	179	175	94	144	91	155	94	158
TCGGCAGGCTCACTTA	ref_671_RC	95	38	128	129	43	91	46	98	55	89
TGTACTTCACGATTTG	ref_671_RC	70	34	92	68	39	64	28	70	39	55
CTAATGGGCTGTCAGA	ref_671_RC	43	15	23	41	12	26	12	32	17	28
GAGCCGTCATGCTGCA	ref_671_RC	0	0	0	0	0	0	0	0	0	0
TTTCTCAGGGGTTACA	ref_671_RC	48	26	79	66	28	46	17	70	31	55
ATAATCAAGTCGGTAA	ref_671_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGTTCTAATCAG	ref_671_RC	0	0	0	0	0	0	0	0	0	0
CGTTATCTTTCTGGCC	ref_671_RC	58	28	74	67	28	40	26	51	32	45
TCACTAAGAAGAACCC	ref_671_RC	0	0	0	0	0	0	0	0	0	0
CACTTCTATATCTCCC	ref_671_RC	21	15	19	20	21	17	14	18	12	16
ACTCACCCTAAAGTGC	ref_671_RC	27	27	45	42	22	38	37	27	50	30
GGTGTGGTCGGGCCCG	ref_671_RC	38	21	45	32	22	25	15	40	13	23
AGGTTCAGTTCAGTGT	ref_671_RC	109	65	146	156	70	111	36	102	51	95
TAATAAGTGCAGATTT	ref_671_RC	41	22	53	45	23	30	28	35	18	25
GTCATATTTGGCGCGG	ref_671_RC	221	107	262	203	93	194	109	190	94	172
CGTCAACCGGGAAGCT	ref_671_RC	0	0	0	0	0	0	0	0	0	0
GTTGATAGTTTGTCCC	ref_671_RC	71	32	82	73	39	54	37	77	33	54
CTCTTCCGGGCAAACG	ref_671_RC	27	18	47	35	24	34	16	41	20	41
GTTTTAATTCTTTCTG	ref_671_RC	0	0	0	0	0	0	0	0	0	0
CACGTGTTATATAGCT	ref_671_RC	377	236	430	396	248	378	257	367	260	308
CACACGCTGCAATCGT	ref_671_RC	29	6	28	21	10	10	12	27	7	23
AAGATGTCAATTCCGA	ref_671_RC	0	0	0	0	0	0	0	0	0	0
CTTCTATCGGCGTAGG	ref_671_RC	29	16	37	30	16	20	6	15	15	25
GACTTCAACCTCTGCA	ref_671_RC	17	17	23	37	15	28	18	21	15	18
GTTCCAAACTCCACTG	ref_671_RC	19	9	26	23	13	14	10	19	7	17
AGCTAATTAAGCTTCA	ref_671_RC	0	0	0	0	0	0	0	0	0	0
CCCTTCAGAGCTGCAT	ref_671_RC	88	58	95	82	39	79	36	63	33	58
CGCGGGAACTCCGTCC	ref_671_RC	0	0	0	0	0	0	0	0	0	0
TTCTGCCCTTTAAGGT	ref_671_RC	254	110	266	216	115	216	140	163	148	182
TCCATTGCGACCCTAT	ref_671_RC	253	130	366	291	137	253	133	261	160	223
ATCCTCGTAACTTACT	ref_671_RC	73	42	95	90	34	76	56	71	49	47
AACTTTTATTATTGTA	ref_671_RC	0	0	1	0	0	0	0	0	1	0
TCCCGCTTGTGTTCAT	ref_671_RC	137	136	158	130	152	121	148	116	155	113
TACGCATAGGGAAGCT	ref_671_RC	238	90	234	219	95	206	104	208	107	179
AGGTAGCAGCAATCGG	ref_671_RC	13	7	25	24	9	8	9	15	6	22
AGTGACTTGCCTGAAG	ref_671_RC	182	111	256	192	89	210	95	211	114	180
TACTTGCATAGTTTGC	ref_671_RC	112	69	145	97	75	129	61	108	69	99
GCCCAAATCACAGAAT	ref_671_RC	187	112	219	215	123	184	97	196	106	183
GCACGTGCAATTTTCA	ref_671_RC	199	105	229	207	105	169	118	157	123	173
TTCGAAAGGGCGAGGG	ref_671_RC	43	29	62	59	12	50	22	41	22	32
CGGGTGATGTCATATA	ref_671_RC	0	0	0	0	0	0	0	0	0	0
GCCCTCCCGATAGGTA	ref_671_RC	90	59	117	94	61	80	40	120	49	90
GTTGTAGTTCATTCAG	ref_671_RC	27	16	33	35	11	35	24	27	25	28
CTTGGACCTAAAAAGC	ref_671_RC	0	0	0	0	0	0	0	0	0	0
TTTCGAGTTTCGTCTT	ref_671_RC	37	30	66	65	25	33	31	44	32	47
GGCTTTTATTTGCATG	ref_671_RC	56	26	45	75	39	44	36	62	37	62
GAGTGGTCACGGTTGA	ref_671_RC	213	115	268	234	127	210	132	190	129	185
GGACCTCCAGAGGAAC	ref_671_RC	183	84	187	132	95	148	83	110	110	129
TCGCTTGTGCTTAGTA	ref_671_RC	52	36	50	37	34	60	26	43	26	51
CTTAACGGCGCAGGTC	ref_671_RC	73	25	77	72	35	55	35	59	31	53
TATAGTTTTGCATCCG	ref_671_RC	0	0	0	0	0	0	0	0	0	0
CGATTAATCTGACAGA	ref_671_RC	94	50	108	103	42	77	45	96	45	71
ATTACGATTCTAGATT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCCGCAGGTAATT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CCCATTCTCAGATTGT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCGGCCAGCCCAA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GTCCACTTTTGAGTCT	alt_1093_fdr	129	104	158	126	124	91	119	128	112	86
CGGAGTTGTCTGTCAG	alt_1093_fdr	25	31	52	21	24	35	15	32	26	28
ATATCCGGTAGCGCCT	alt_1093_fdr	46	35	64	46	39	43	44	43	44	39
ATTGACAAGGTCTTTA	alt_1093_fdr	44	29	57	35	31	51	38	37	40	39
GGGGATGCTTCGCTTC	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CGAGCTCGCGTGGATT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TGACTCCAGCCAGTCG	alt_1093_fdr	54	79	86	87	85	47	89	62	70	45
ACTTGGTACATATTTG	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CACCCTGTCTGCATTA	alt_1093_fdr	35	31	33	39	47	33	38	26	35	27
TGAAGGTTATTGCTAT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGTTAACGTGATA	alt_1093_fdr	13	15	12	18	6	13	13	13	15	14
TGGTCTGTAGATTCCC	alt_1093_fdr	48	45	60	44	35	43	44	45	44	40
ACTCATCTATATAGAG	alt_1093_fdr	19	14	10	16	15	9	8	7	11	13
TCACCCTCAATTCGCA	alt_1093_fdr	65	51	86	62	45	60	53	51	52	59
TAGGGCGTGAGTCTCC	alt_1093_fdr	126	105	157	166	119	130	129	123	103	119
TTTGGCACCATGTCTA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTTGACGTCCGCGGGA	alt_1093_fdr	26	29	31	36	33	44	42	45	26	21
ATCGTCCCGCCCAGGC	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAGATTGCGCTAA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGATGTTATCCTG	alt_1093_fdr	52	52	70	60	33	50	45	41	45	34
TCGTAAGTTTCAGGCC	alt_1093_fdr	129	117	201	179	120	155	115	148	117	155
GAATTTATCAGGCGCT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
ATATGCGTGTGTTCTC	alt_1093_fdr	67	52	63	40	43	65	44	47	43	34
CTATTCCTTTTGTCAC	alt_1093_fdr	62	52	79	72	42	46	50	60	53	67
ATTCGCAATACCAGTG	alt_1093_fdr	3	3	5	3	4	4	5	1	5	4
TCGCATTGCAATTGTC	alt_1093_fdr	39	40	50	54	33	38	32	40	41	33
TTGATGATTATGCTGT	alt_1093_fdr	167	142	206	171	98	157	148	124	182	135
TATCCTGCGATCTATC	alt_1093_fdr	27	19	26	40	27	24	14	25	25	21
CCTTTCCTGCAGGACG	alt_1093_fdr	36	13	38	44	38	39	37	24	32	28
GTGTTCGATTATTTCT	alt_1093_fdr	59	31	66	60	34	57	42	52	28	41
CATATACTTAGTTTTA	alt_1093_fdr	26	17	23	27	15	26	19	20	18	23
ATTTATAAAGGTATGA	alt_1093_fdr	6	4	5	11	6	4	6	7	5	7
TTATCTCTGCACCGTA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTATTCCGCTTCT	alt_1093_fdr	22	26	36	34	24	33	29	27	20	16
GTGGGGCCGTTGCGAG	alt_1093_fdr	41	41	73	56	45	40	44	53	35	35
CTACTTCAAAAGTCAG	alt_1093_fdr	208	200	218	207	226	218	189	202	223	159
TAAACACGGGCATTAT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGCACTGAGCCTG	alt_1093_fdr	34	10	19	12	16	13	20	25	14	14
CTTCCCCCAATGTCAC	alt_1093_fdr	11	18	14	13	11	18	10	13	11	6
TCCTGGCTGGTCAGCT	alt_1093_fdr	14	12	25	20	10	9	9	13	13	9
CATGTTTGAGCATGCG	alt_1093_fdr	17	13	29	18	20	18	10	12	10	14
GATTTTAAGTCTTAAC	alt_1093_fdr	19	11	12	16	8	9	10	21	19	6
CTTTAGCAATGATATA	alt_1093_fdr	174	143	186	187	132	198	118	146	124	156
GCACGCGTCACGAGAC	alt_1093_fdr	79	46	97	100	67	68	65	95	73	89
CATTTCCTGGTCTACG	alt_1093_fdr	38	27	52	39	31	28	37	49	36	18
TAGCGGGTCCAGCTCC	alt_1093_fdr	19	24	25	21	10	20	22	14	23	19
AAATCCAAGACCTGGC	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAACCCTACCCCT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CCCCCGTTTCCTTCAG	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACTATAATACATCGTA	alt_1093_fdr	9	8	20	10	8	10	7	16	19	10
CTATCGCTTTCCCTGC	alt_1093_fdr	158	148	149	175	156	176	154	136	162	140
CTTGCATTCCGATAAT	alt_1093_fdr	210	164	272	220	192	225	176	215	184	175
TGTGTGGGATTTTAAT	alt_1093_fdr	61	39	78	77	50	59	65	57	61	57
ACCGCTTGTCGATGGG	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTTCCTATGTTA	alt_1093_fdr	31	16	25	18	24	15	29	25	31	22
ATTTTAGTTTGTGGTG	alt_1093_fdr	17	9	15	9	15	11	13	15	11	13
TACAGTTGTAAAGCGC	alt_1093_fdr	8	7	12	12	20	6	9	12	5	6
GCGTCATCTAGTCTCC	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTGGCGAATCTCG	alt_1093_fdr	34	25	53	40	27	33	29	32	35	34
GCCGTGAGCATCATAG	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACTTACAGTCACGTGG	alt_1093_fdr	68	65	71	84	71	62	55	58	62	47
AATGGCCGACCCAGGT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTCGTTTTATCGA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCTCTAGCTACTG	alt_1093_fdr	12	16	9	6	24	7	14	9	22	6
TCTACGTGATAGTGAA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GTAGACTATATTTGTC	alt_1093_fdr	22	22	40	24	25	27	23	14	23	24
TCGGGGGGCAATTGGG	alt_1093_fdr	12	4	17	13	3	23	3	8	8	11
GTTTGCCCCTTGGCTA	alt_1093_fdr	131	93	105	123	79	104	88	102	71	79
CCCGGAACTGGCCGCT	alt_1093_fdr	29	23	32	47	22	32	20	39	19	23
CGTCCGCTTAAGGCCA	alt_1093_fdr	57	35	72	52	49	56	57	45	64	63
TAGGGGCTAACATAGC	alt_1093_fdr	8	0	6	7	4	8	6	3	5	6
CCTACCAGCCGGGGAC	alt_1093_fdr	4	3	10	12	14	8	6	7	15	11
TCTGTTGCCACGACCT	alt_1093_fdr	12	29	22	26	11	21	8	18	12	27
TCGAGGGCCTAGCTGC	alt_1093_fdr	19	15	19	24	15	27	20	11	12	11
ACTAAAGCTCTATTCC	alt_1093_fdr	35	47	52	44	32	38	32	34	37	34
CGCAACCACGTTTCAA	alt_1093_fdr	35	10	31	23	25	15	18	22	24	19
CGCCAGTCTCGTAACT	alt_1093_fdr	54	31	47	47	48	46	43	54	45	44
CATTTCTCATTAAGCT	alt_1093_fdr	74	58	86	92	61	75	49	60	51	70
TCCTTTGTCCCGGATG	alt_1093_fdr	11	9	29	21	16	10	13	7	8	15
GGATGAGCATCGAGCC	alt_1093_fdr	12	14	10	11	10	12	18	10	8	7
AATCTTTAACGTTCGG	alt_1093_fdr	297	195	347	298	219	260	216	314	227	265
AGTCATCATCGGACAA	alt_1093_fdr	19	14	24	26	15	17	20	16	13	19
ATTTCAGACTCTTCCC	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTAAATTTGAGA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCCGGGGCGGCGT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TTCATTCGAGTTGCCT	alt_1093_fdr	22	20	20	20	10	17	17	12	18	14
ACTTTGTTATATCCGT	alt_1093_fdr	208	175	265	225	172	191	148	193	148	177
ACATACTTAGATTCGA	alt_1093_fdr	20	14	23	25	21	19	21	21	13	20
ATGTGGACCAGAACTA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GAACCCACTAGCCAGT	alt_1093_fdr	45	35	43	33	36	39	34	36	40	43
TACCTTTTGCTTTCAG	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCGTCCATATTAG	alt_1093_fdr	124	61	118	104	79	119	79	83	94	91
CATTAAGATTTTTGTC	alt_1093_fdr	89	93	117	130	87	107	73	102	96	102
CGCCCCCGGCGACTCA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCTGCACGGGTCT	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTCCGGTGCGTTT	alt_1093_fdr	141	100	162	144	114	162	127	139	101	115
AGGCGTTAAGGAATGT	alt_1093_fdr	129	112	153	140	130	124	119	134	125	131
TATTGGAAGAAGGTTG	alt_1093_fdr	14	9	12	12	6	9	8	17	8	4
CCACCCTACTCGACGG	alt_1093_fdr	35	51	52	42	47	31	48	32	49	28
AAATCGATTGGACAAA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGCCTCTCCTACT	alt_1093_fdr	46	73	46	46	63	53	58	40	72	36
GCCTGTGAATCTCATT	alt_1093_fdr	276	249	380	340	253	288	282	305	258	265
GAAGAGACACGCTGCA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGCTGTTCACGCC	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCGGGTTAGATTA	alt_1093_fdr	0	0	0	0	0	0	0	0	0	0
GTCTACTCTCCGTGGT	alt_1093_fdr	12	11	9	17	7	5	12	7	18	10
ATGATGGGCAAGTCTT	alt_1093_fdr	21	11	23	25	13	13	14	19	14	19
AGTAGTGCTGTGCTAC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GATTATGGCCACGTGG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TGACCCGCTTGCTCCG	alt_3829_reverse	28	34	28	22	22	31	45	21	29	19
TCGGATTCTTCAGAAT	alt_3829_reverse	153	206	153	148	166	161	214	141	231	142
GTTTCCTATGGGGCAA	alt_3829_reverse	5	3	3	4	3	2	2	7	0	0
CTCCGCGGACTCTAGT	alt_3829_reverse	64	77	73	52	76	47	93	53	84	50
CGACCCTGTACTAGGC	alt_3829_reverse	26	39	33	23	25	30	43	21	37	23
GTATTTACGGCCTCAG	alt_3829_reverse	44	31	46	34	29	34	30	33	18	40
TTCTAAGGAAGGTCGG	alt_3829_reverse	12	10	13	4	15	6	14	11	21	10
CGTCGTCCTCTTAGAA	alt_3829_reverse	7	26	18	16	16	10	22	18	19	15
GTTCTTTTTCTTCGGT	alt_3829_reverse	49	55	62	57	40	69	51	58	45	47
TCAGTATCAAGGTCAT	alt_3829_reverse	10	21	18	9	19	15	17	11	29	6
CGATTCGTTGTCGTTA	alt_3829_reverse	2	7	6	6	7	8	5	5	10	3
TGTACCGTGAATGCTA	alt_3829_reverse	25	44	21	25	43	32	43	25	38	16
CCCTCAAAGAACAGTT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CATGTTGTGTTTTCCC	alt_3829_reverse	31	38	34	24	50	41	47	31	30	35
GCGTTATTTATGATCC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CGATGTTCATCCAGAT	alt_3829_reverse	9	25	11	7	15	12	13	12	12	7
GTCTCTTTCCAGGCGC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTAGTTCTCCACA	alt_3829_reverse	23	25	19	17	19	17	25	14	21	16
TTGCACCGTTCTGCAG	alt_3829_reverse	4	4	5	4	3	4	5	2	3	2
ACAAAGCATTTTTTCA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TATTGGACCTTCCTAC	alt_3829_reverse	11	12	21	12	22	14	26	10	19	11
CCCCAGAAACCTATAT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTTGGAATTCAA	alt_3829_reverse	45	25	57	43	22	41	29	44	32	41
GTATGCATATCACTTA	alt_3829_reverse	36	40	32	20	51	20	29	30	42	27
AGTGCACCACCGCCGT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
ATCACCTCCGGGAAGA	alt_3829_reverse	39	29	32	32	41	21	41	21	41	24
TTCCCATCACACACTC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGTTCGCCCTGTT	alt_3829_reverse	6	11	8	10	6	6	13	9	12	13
GTTTGGTCATGCGTAA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
ATGATTAATGGGGGGT	alt_3829_reverse	35	27	29	14	27	27	27	22	30	17
GGTATACTGTGTGTTT	alt_3829_reverse	22	26	44	26	41	29	34	15	28	22
TATTCAGCTATGCTTA	alt_3829_reverse	2	23	7	5	28	9	22	0	30	3
TATGGGAATTCCACTC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCGTTTATCGTTT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
AACAGTGTCTTTCGCA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTTATTCTGTGTGCAT	alt_3829_reverse	29	30	22	16	29	25	32	22	25	15
GGACGAGCCTGTCTAT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CAATGACATTGTGCAC	alt_3829_reverse	5	13	4	8	8	3	6	7	14	3
GTCATGAATCAACAGC	alt_3829_reverse	6	3	12	5	6	6	7	7	7	13
GGATCTTGTTGTGTTT	alt_3829_reverse	36	44	29	48	46	31	33	37	37	34
CCATCGGCGTCCTTAT	alt_3829_reverse	10	43	14	17	51	13	34	14	45	13
TGCTAACTTTAAGAAT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGTTCGTCTGGTC	alt_3829_reverse	19	41	21	34	32	28	34	23	51	23
GTTTATTAGCCCCCAG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTAGCGCTTTGC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
AATTGGGGGCTGCCTG	alt_3829_reverse	10	10	12	15	11	11	9	18	7	12
CCACGTCATGATTGAA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTCACTGACTTTA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCCGTGTACTGCC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GATATTTTCACGTTTT	alt_3829_reverse	3	4	5	4	10	5	7	6	2	2
AATTGATACCCCTATC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGTACGGCAGCTT	alt_3829_reverse	18	9	23	9	21	9	11	11	13	5
TAGGCGTTCTTTATAT	alt_3829_reverse	5	6	3	4	9	2	7	9	6	5
GCGGCTTTATAACCTT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTATCTGCCGGAG	alt_3829_reverse	27	15	16	21	15	20	22	22	25	16
CATTTGCGTTATCGAA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
AGCCAGGCCTGATATT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
AATTTTCCTCCCGTCG	alt_3829_reverse	7	7	8	14	16	6	14	5	14	8
TAAGATGCATCGTTTA	alt_3829_reverse	48	80	80	41	43	64	65	53	84	46
GGAGTCTTATCGGTCC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GATGATGCGGCCATGC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTGTACCTAGGCACCC	alt_3829_reverse	17	31	13	15	19	23	22	11	28	14
GCTCCAAGTGATCGCC	alt_3829_reverse	23	40	37	34	50	34	50	36	49	27
CACGCAGAAGAACCAC	alt_3829_reverse	11	23	30	8	25	17	25	8	23	14
ATGAGCCCGTTCAACT	alt_3829_reverse	8	8	11	7	5	5	7	6	13	6
AATGGTTTGTACTGCG	alt_3829_reverse	22	44	35	29	27	25	35	22	32	17
ATCCGACTGGGACAGT	alt_3829_reverse	3	4	1	5	5	2	5	4	3	2
ACCAGCTCTTCGTAAA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCTCAGATACCCG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGCCAAATAGGTA	alt_3829_reverse	4	13	22	12	14	17	20	13	11	9
TCGCAACATTTGTAGC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTTGCGGAGCGTA	alt_3829_reverse	0	4	2	2	1	1	3	1	1	2
CGTTCTATTATTGTTT	alt_3829_reverse	7	7	6	4	3	4	10	4	9	2
GCTTTCATTGTGTGGC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGACCATTATCCGATT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCTCAGTTCTGAG	alt_3829_reverse	26	37	25	15	28	21	44	13	31	23
TCTCTGCATGCGCTTC	alt_3829_reverse	49	70	72	55	66	45	66	55	72	63
CCGTTTCCCTCTGCAG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGGATATTCTGCT	alt_3829_reverse	11	17	12	11	16	8	12	16	9	10
TACAATGAACGAGGGT	alt_3829_reverse	1	1	0	2	5	2	0	2	1	1
GCCCCGTGATGGGGTT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAGTGGCTCGTTA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTGACAGGGTGTCTAC	alt_3829_reverse	13	18	17	12	22	7	9	15	18	14
CACGAAAGCGATTTCG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCCCCCTGAGGTC	alt_3829_reverse	74	73	62	65	73	45	80	54	46	53
CTCCGTTAGATTTTCA	alt_3829_reverse	28	19	21	20	24	20	28	21	30	16
AAGTACCAGATGGGCT	alt_3829_reverse	24	33	21	11	19	13	15	22	18	15
GTAACGGCTAATTCGG	alt_3829_reverse	21	43	29	29	30	39	32	22	31	22
GGCGCAGGTACAAAGC	alt_3829_reverse	13	17	7	10	20	7	9	12	7	9
ACCTGACTCTTCGATT	alt_3829_reverse	25	27	24	16	29	10	31	24	31	15
TTGCCAGTTCTTCATG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGTTAAAAAACTT	alt_3829_reverse	37	50	18	32	47	32	49	32	40	31
TTGTAACCTAATGAAA	alt_3829_reverse	11	14	14	11	12	12	20	11	17	8
ACATCCTGTTCGGGCG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CAAATTTACTTAGGCA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCCAGTGCCTGTA	alt_3829_reverse	12	37	13	17	17	10	15	16	20	13
TCGGTTGCCAGGCGTT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
AAGTTAAGTTATCCAA	alt_3829_reverse	9	2	10	1	5	4	9	7	5	7
AAGTGTAACGTTAGAC	alt_3829_reverse	7	23	16	12	15	12	19	8	21	18
TATTGGCTCGCCTGGT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTATAAACTTTTTGGA	alt_3829_reverse	42	38	45	30	50	40	61	41	41	37
CATGGGAGCGAGATCA	alt_3829_reverse	24	35	28	33	18	41	39	35	35	26
CACCTGCTTTGGTATC	alt_3829_reverse	9	30	21	11	23	20	16	18	37	15
GATCCGGGTGATTTGG	alt_3829_reverse	10	10	14	11	17	15	16	9	19	15
GTGTTTTACGCCTTCG	alt_3829_reverse	48	68	49	38	73	46	85	44	82	55
GGGCACTTGTCCGCTT	alt_3829_reverse	16	27	33	40	35	22	43	26	53	26
CCCCAAGTTAAGGGCA	alt_3829_reverse	19	19	23	13	15	12	15	12	17	15
CGGAATTGGATGGAGG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TATATTATGTCAGTGC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCGCTCGTTAGAT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CATGAGAACTGCATGA	alt_3829_reverse	22	38	35	18	34	19	34	19	40	34
CTCCGTTTAATCTCCG	alt_3829_reverse	15	16	11	18	17	6	14	13	22	12
TAGAATGCGAAACGAA	alt_3829_reverse	9	5	0	5	2	7	5	2	6	2
TATTTAACCCATAACG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGGGAGCATACTG	alt_3829_reverse	6	10	10	10	15	8	12	7	19	10
TCGCTGCGTGTCATGG	alt_3829_reverse	11	13	16	8	12	13	18	12	19	6
CATTGCAATGACGTTT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCTAACGTGTGCC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATCGTGAACTAC	alt_3829_reverse	11	8	8	9	10	0	3	9	6	4
GTTGTTTGTATACCGA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGACTCAGTATTA	alt_3829_reverse	12	28	13	15	21	10	30	12	29	8
AGGGGCTGCGATCATT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
ATATGTGCCTGTTTTG	alt_3829_reverse	14	20	13	10	18	10	16	18	21	15
TCTCAATATTTCCGGA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GGGAGTCTGTGCTAAA	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GCGGAATCCGTTTATT	alt_3829_reverse	17	19	14	12	17	16	28	12	22	14
CATGGTAAGTGGGCAG	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTACATTGTTGTTGTG	alt_3829_reverse	51	72	54	32	84	51	51	51	65	38
TCCCACAGGCTTCAAG	alt_3829_reverse	7	30	14	6	20	4	18	12	15	7
TCTGGATCACGCCTAA	alt_3829_reverse	11	11	18	8	15	14	15	11	16	8
TACGGTCCATAAGCCT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
ACTATGAAATCGTCTT	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTGAAGGCCTACC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTATTTTCTGTCC	alt_3829_reverse	8	30	17	12	34	3	43	10	48	7
TTACTGGAACTCTCCT	alt_3829_reverse	60	72	62	55	60	50	80	58	75	39
CGGATATTGACCTATC	alt_3829_reverse	30	27	29	32	38	36	28	22	42	22
TTAAACGTCACTGTGC	alt_3829_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCCATAGCACTCA	alt_3829_reverse	3	54	14	8	47	4	46	3	45	5
AGTAACATTAAAGGGA	alt_3829_reverse	9	21	9	8	13	13	16	15	21	13
CGATTCTTCCTATATT	ref_1654_missing	116	45	146	148	35	115	41	102	29	97
AATTCGGTCCTGGTTT	ref_1654_missing	20	6	23	16	5	13	5	13	8	16
TTTGCAGTCGAACCCG	ref_1654_missing	0	0	0	0	0	0	0	0	0	0
ATGATTTTAGCGTACT	ref_1654_missing	48	24	69	47	28	43	26	35	20	46
GTTTTAGGCCTACTTC	ref_1654_missing	11	6	21	11	8	19	8	11	12	15
TACTTCGCCCAAGTCT	ref_1654_missing	14	8	20	17	5	6	7	13	9	16
CTTCCGTATTTACGCT	ref_1654_missing	121	31	139	120	39	114	58	116	42	98
GCTGGGTGGTCCGACC	ref_1654_missing	116	43	112	125	48	116	50	106	47	106
GTTCGGTATTAGTTAA	ref_1654_missing	0	0	0	0	0	0	0	0	0	0
TTCATGGACTTACTTG	ref_1654_missing	64	29	97	73	35	67	39	74	35	54
CCAGCGATAGACTCCT	ref_1654_missing	237	149	294	295	148	242	151	262	147	227
GACAGTGCTGGCCTCA	ref_1654_missing	106	36	128	95	39	94	45	102	42	80
ACCTAGTGTGTATATG	ref_1654_missing	43	26	65	41	26	51	42	48	23	30
CCCTGGTTACAACGGA	ref_1654_missing	214	113	255	267	111	208	94	192	93	196
GATGTTACAGTGGGCA	ref_1654_missing	75	29	64	63	29	44	20	56	33	51
TCGGTTATGGACCCTC	ref_1654_missing	131	42	176	133	51	132	47	137	61	125
GTAATGAAACGTGTTT	ref_1654_missing	8	1	4	9	1	5	7	2	0	2
CGATGACGGCCTAGAC	ref_1654_missing	22	5	28	25	2	8	3	14	6	13
ACTACTCGTGATTCCC	ref_1654_missing	78	34	68	66	28	72	34	87	26	68
CTAATCCAAAAAGTCC	ref_1654_missing	65	40	98	85	33	87	39	70	45	74
AGTTGGTTAGGGCGCG	ref_1654_missing	96	49	127	130	53	133	54	111	52	77
TGAATCGAAACGCCGT	ref_1654_missing	0	0	0	0	0	0	0	0	0	0
ATCCGTTGTGTAACAT	ref_1654_missing	38	14	51	59	18	54	30	44	25	50
TTTCCGATTACTCCAA	ref_1654_missing	31	9	19	13	12	13	8	16	4	17
TATTTCTTTTCCGGAT	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCACCATATAGAA	alt_3951_upstream	1	4	4	0	1	4	2	2	2	2
CCCCTCGATCATTGAA	alt_3951_upstream	52	54	70	54	58	47	67	46	68	37
GACAGTCATCCATTAC	alt_3951_upstream	3	13	5	7	5	9	14	2	9	10
GTTGATTCGAGTTACC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CCACTCTTCTTAGTGA	alt_3951_upstream	16	46	33	28	40	24	34	29	48	30
ATGTACTTTTGATTTC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CACGCTATTCTATGTT	alt_3951_upstream	15	16	8	10	8	12	12	11	15	9
AACAACTAATTTTGGA	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTCCCGAACTGTC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCATTATGTTGTT	alt_3951_upstream	56	89	61	54	76	60	68	57	78	68
ACTATACTGGACTCTT	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
GAAATCGCTGCATACC	alt_3951_upstream	31	44	53	31	55	30	47	35	53	20
TCTTGAGCACTTCCTT	alt_3951_upstream	25	26	26	17	20	13	26	12	28	13
TGGAATTCCTCAGCTA	alt_3951_upstream	9	15	17	9	11	8	17	12	12	4
ATTCTCGCGAACCCGC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTGTTTAAGGTTA	alt_3951_upstream	66	71	56	62	80	60	66	64	83	53
GCGGTCTGGTCGTGGA	alt_3951_upstream	35	36	27	25	39	29	28	21	30	15
CCGGGGTGTTTTTAAT	alt_3951_upstream	8	3	5	4	6	5	11	6	4	4
GATCAGAAACAATAGC	alt_3951_upstream	80	62	88	86	73	77	72	59	67	64
CGCTGTATGGCTCGTA	alt_3951_upstream	13	22	24	14	13	17	7	13	16	11
CACCCCAGACGTTCCG	alt_3951_upstream	141	144	161	141	142	149	134	128	160	140
GCCAGTAAGCCTTCTA	alt_3951_upstream	16	41	19	18	20	14	36	23	34	13
AACATTTATATCTATG	alt_3951_upstream	38	36	42	34	34	32	34	25	25	32
AACGGCAGTCTAGGTT	alt_3951_upstream	9	11	11	8	11	12	7	12	22	13
ACGGATTAGAACGCTT	alt_3951_upstream	90	101	97	77	122	77	94	88	115	69
CGTGCAGAGGTTCGTT	alt_3951_upstream	78	97	113	74	114	79	97	80	123	74
TGCGGCGCGTCCCTTT	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
GAATTCTGGTGTTCGT	alt_3951_upstream	14	25	20	13	14	18	30	17	34	12
TCGTTCTACTGGTATG	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAGGCGCGCTTTT	alt_3951_upstream	36	26	52	31	35	35	48	39	41	43
ACATCGTGGAGGTTAG	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGGTTCGCCCTCG	alt_3951_upstream	11	17	29	23	17	15	21	15	26	15
GTCCGATCCCTGTAGC	alt_3951_upstream	4	8	0	3	12	2	7	1	10	1
CCCCGCCAATCACTTA	alt_3951_upstream	1	57	2	2	44	3	49	1	43	1
CTCCTGTATAAGGCTA	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TTAAATGACCTGCGTT	alt_3951_upstream	33	32	24	32	29	21	32	18	36	32
CATTCGTGTTTACGTA	alt_3951_upstream	0	0	1	0	0	0	2	0	0	0
ATAAGAGGTTGATTGT	alt_3951_upstream	9	3	6	5	6	8	6	7	13	5
GTGGAAGGCAACAATA	alt_3951_upstream	36	30	49	39	40	35	39	31	45	27
CACTTTACTGAAATCG	alt_3951_upstream	19	21	11	22	22	9	14	22	22	12
GACGACTACCCAGCTA	alt_3951_upstream	144	207	219	160	240	147	208	151	240	147
CTACCACGTGTTCAGT	alt_3951_upstream	29	52	40	37	57	28	44	27	35	36
GTGTTGTGTCTTGAAT	alt_3951_upstream	161	215	169	161	217	148	209	137	192	124
CAATCCCCGCGAGTGA	alt_3951_upstream	1	10	8	3	18	4	14	1	16	5
GGCGGGACTAAATCTC	alt_3951_upstream	243	323	285	242	297	242	330	180	337	171
CCGCATTTTTGAGCGC	alt_3951_upstream	28	37	28	28	32	15	39	23	40	18
TGCCGTACCATGAAGC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTGTTTCCTATGC	alt_3951_upstream	19	15	12	8	22	5	23	10	20	6
CAGTGACCGTACGCTT	alt_3951_upstream	118	141	147	116	170	106	144	123	168	112
TAAAACCTTGGCCTTT	alt_3951_upstream	10	16	14	18	13	16	8	11	18	10
CGGCCAGTGCGATAAA	alt_3951_upstream	34	27	35	30	24	18	25	29	27	17
TAGGACTAGACTGGGG	alt_3951_upstream	49	73	78	64	79	46	86	53	90	58
CTCATTTTTCGCGAAT	alt_3951_upstream	21	15	14	18	24	16	11	17	21	7
ATCCACATCCTAGGTC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TACGTCCAGTTGCGGG	alt_3951_upstream	25	11	17	14	18	11	22	11	16	9
ATCACTTGACCGCCGT	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TGACGTACTACGTCCC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCCGCTGTCAACT	alt_3951_upstream	84	95	96	76	110	80	112	86	128	60
ATCGTGGTCACTGGGG	alt_3951_upstream	222	252	249	231	254	247	216	222	262	241
GGCGTAGTCTACCGCA	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TATTGTGCTTAATCAG	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
GTCTACTGCTCCATGT	alt_3951_upstream	25	46	34	35	38	27	60	31	50	24
TCTCACTACTGCCGGT	alt_3951_upstream	15	33	26	21	28	20	44	25	38	22
TCGACTTCTACCCCCT	alt_3951_upstream	11	24	13	8	28	11	23	17	35	15
AGTGCACGCGTTCTTT	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACAGTTAGTCGT	ref_3951_upstream	18	31	10	13	28	18	48	20	30	18
GAAACGGACTTTTTGC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TTGGAGCAGGCTGCTA	alt_3951_upstream	229	291	309	251	272	264	292	216	291	233
CGGCTACCCTGCTGTT	alt_3951_upstream	113	145	132	135	141	96	143	106	172	96
TGCTTAACACATAAGG	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTACGCGGTTTAA	alt_3951_upstream	28	29	40	35	35	37	34	40	40	35
TTAAACCAATTTGAAC	alt_3951_upstream	22	18	15	18	25	7	17	11	32	14
CAAGGCAGCAGATCCA	alt_3951_upstream	48	50	56	46	51	43	52	31	55	55
GAACGTATACGGCCTA	alt_3951_upstream	45	48	38	36	32	40	45	36	43	37
GAGTACTCAACCCTGC	alt_3951_upstream	47	58	45	39	70	37	62	50	56	35
TAAAGGGGTACTTGGC	alt_3951_upstream	32	27	57	47	49	33	42	23	40	32
GGTGGTATATTCGCTC	ref_3951_upstream	10	10	9	8	6	6	5	1	11	1
CAGATCATATTCTGTC	alt_3951_upstream	30	36	36	36	36	28	27	26	49	27
GGGATCTATGGTGCCT	alt_3951_upstream	8	22	12	7	24	11	18	8	9	8
ATAGTTCAGCTGTACG	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TGTGATTATGAACTTT	alt_3951_upstream	66	69	86	65	104	69	105	65	78	53
AGGACGCAACCTTCAG	alt_3951_upstream	13	8	12	10	25	14	19	4	9	7
CCAGTTAAACCCGGTT	ref_3951_upstream	89	153	137	138	173	109	153	120	178	93
ACACGTGTGGAGTCTG	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CTTCAAATTATACCAC	alt_3951_upstream	30	31	48	29	38	38	39	37	48	40
ACTCCACCCCGGAAAC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CGTGAACCATAGGGCG	alt_3951_upstream	7	9	14	6	13	14	13	5	10	9
TAGATTCACTGGGGCA	alt_3951_upstream	1	5	4	6	6	2	2	0	8	1
GAATCAATTATCGTGG	alt_3951_upstream	96	135	100	109	141	73	139	80	115	71
GCATACAGTGCGGGTC	ref_3951_upstream	295	329	340	264	347	279	355	249	371	254
GTGTGGAGACAAACCG	alt_3951_upstream	21	15	29	19	22	19	13	11	18	11
TACACTGAATCACGTA	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCGGGAGTAACAC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
CCATAGGTCAAGTGAT	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGGTGTGCTTCCA	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCAACACTCTCTT	alt_3951_upstream	30	57	45	27	40	25	28	37	48	29
TGTTAGTTGCCGTTCA	alt_3951_upstream	56	70	74	62	78	56	88	52	71	51
TATCCCCTTTCCAAGG	alt_3951_upstream	8	14	22	12	22	16	18	4	27	9
GTTGGCAAGTGCCTCC	alt_3951_upstream	44	61	69	53	59	64	60	48	83	44
CCATCACCAACAAAGG	alt_3951_upstream	5	4	2	5	7	5	6	3	10	6
AGTGCATTAAAACGAC	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TCATTCTATGTAGAGG	alt_3951_upstream	0	0	0	0	0	0	0	0	0	0
TTGGATTAGCTTGGGG	alt_3951_upstream	21	17	34	14	21	22	22	11	26	18
GCAGACTTCAGATTAA	alt_3951_upstream	14	12	13	15	5	7	11	7	9	5
TGCTCCTCACAGCGGT	alt_3951_upstream	23	26	21	15	17	11	19	14	27	14
TATGTTAGACGGGGGG	alt_3951_upstream	19	13	21	7	16	7	15	8	19	5
GTACAAGAAGGTCCGC	alt_3951_upstream	61	66	61	52	65	53	54	55	51	51
TTGAGCGTTTTTATAT	alt_3951_upstream	64	98	73	78	109	62	99	61	103	62
TCGATCCTAAAGGGCG	alt_3951_upstream	28	55	37	36	43	30	48	33	53	29
GTGCTCGCCCTCTCTG	alt_3951_upstream	64	61	72	58	81	67	57	51	72	49
GACACTGGACACATGG	ref_5927_new	18	36	19	14	35	19	50	17	53	21
GCGTTTCCCCAATGTC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TATATCAACTACCCAC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TTGTATCGCCGGGTGC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
AGTTTTACGGCAAGTA	ref_5927_new	7	26	17	8	41	16	29	18	41	14
TGCAATATAACATAGT	ref_5927_new	49	101	57	47	98	42	145	51	107	46
ATTGATTTGATCGGAC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
GCTACCCTCGCAACTT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TTTAGCTGTCGTTGGT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
CTGAAAGATCTGCCAC	ref_5927_new	19	100	36	31	86	38	93	28	96	33
GGGACAGGTAGCATGC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
AGCGCCAGAAACCATT	ref_5927_new	23	43	29	28	55	32	54	23	38	17
ATATGCTTCTTAGTCA	ref_5927_new	25	56	28	23	56	26	42	19	54	20
TGTACGCCTTTCACCG	ref_5927_new	78	142	85	63	126	66	124	59	143	59
GATTAGTCATAGTTGC	ref_5927_new	20	48	16	24	35	18	47	12	28	20
TTTACCGATTTCTGTA	ref_5927_new	9	27	15	14	20	12	12	12	34	11
TACCGTACTGTCATGT	ref_5927_new	26	81	26	31	63	22	54	26	51	22
TGCCAGTCAAGGCTCT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
CGGTCATGTCTTTCTC	ref_5927_new	14	46	43	25	40	22	41	26	57	27
ACTGCATATCTTAGTG	ref_5927_new	106	255	123	83	238	83	245	81	251	79
GCATTGATTCGTTTCA	ref_5927_new	3	6	6	6	10	2	10	3	8	3
TCGGTAATAAGCATTA	ref_5927_new	14	51	29	27	62	23	58	26	67	18
ATCTATGGTACTGTGC	ref_5927_new	1	2	5	2	10	1	3	0	3	2
ACTGCACAACCGTCAG	ref_5927_new	6	35	15	9	44	18	33	13	51	8
GTTTGCAAACTATTTG	ref_5927_new	24	60	24	19	50	15	61	24	58	15
CCTAGCTCGAGTTAGC	ref_5927_new	60	150	80	71	210	66	191	70	164	53
GCTGCCTCTGAAATGT	ref_5927_new	24	45	27	31	35	21	41	21	52	24
ACTTTTCAGTCGGTTC	ref_5927_new	12	45	24	30	48	23	53	19	48	15
GTATCTGAGCCCCATC	ref_5927_new	46	120	53	50	109	47	99	50	110	48
TACGTTTAAAAATAGT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TGGATTTATTTTTCTA	ref_5927_new	0	0	0	0	0	0	0	0	0	0
CTTTGCTGTCGATCGC	ref_5927_new	3	2	1	3	6	1	3	2	3	2
TCGGGTTAAATCCGTT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TTAGCTCTTAAGCACC	ref_5927_new	19	42	18	21	41	22	54	19	45	23
CCCCGAGACTGTGCTT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
GTCGCAGTTAAGGATA	ref_5927_new	110	258	147	121	312	123	260	107	279	104
CCGATTAGGATGATCC	ref_5927_new	38	58	42	32	63	33	53	26	57	30
CGTATCACGTGTTAGT	ref_5927_new	75	122	72	62	131	53	158	53	151	54
ACATGCAGGCCTCCGT	ref_5927_new	6	11	6	4	7	4	9	7	14	7
GGTCGGTACGCAGCTT	ref_5927_new	8	23	15	9	21	11	29	11	23	4
CAGACAAGTATTTGCG	ref_5927_new	20	132	44	32	129	35	124	21	121	37
GTCTCTGTATTCTAAC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TACTGCGCTTTGACCA	ref_5927_new	0	0	0	0	0	0	0	0	0	0
GGGGACCGTGCCTCGT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
AAATCTATCTGCGGTG	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TGCCTCTATGCGTTCA	ref_5927_new	51	158	56	59	148	49	138	44	148	46
GTATCTCTAAAGCTTT	ref_5927_new	13	17	3	14	23	15	12	9	31	6
CCTTTATGGCGCTGCC	ref_5927_new	48	98	49	56	109	47	102	44	128	48
CTCAGCACCAGGTCCT	ref_5927_new	4	6	1	1	8	2	2	2	5	0
CACGTTGTATCAGGGA	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TACTTGTATGCAATTG	ref_5927_new	20	67	32	17	68	19	53	28	78	24
GACTTGACGCCATGAG	ref_5927_new	28	38	44	23	42	34	68	23	44	16
CTTGTTGTTCTCTGGC	ref_5927_new	49	95	51	59	109	43	119	46	122	58
AGGCGTACTGGTATGT	ref_5927_new	21	46	33	18	39	20	29	16	53	17
CGGCTAAATACATTAT	ref_5927_new	27	49	28	20	41	20	47	17	52	12
CGTGAGCCACATCGGC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
GGAAGCTGCTATATAG	ref_5927_new	0	0	0	0	0	0	0	0	0	0
GCACCCTTAATCTAGT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
AAGCGCCTACTTGATT	ref_5927_new	3	12	6	5	10	7	16	2	19	5
GTGTATTGCCTAAAAC	ref_5927_new	18	20	13	8	26	8	30	11	23	5
TCGCGCGTTAACTACT	ref_5927_new	67	140	102	63	136	71	121	54	132	38
CACGATTAGGCGCATA	ref_5927_new	55	153	82	63	156	62	167	65	142	70
AAGGCTCTTATGCCAG	ref_5927_new	8	23	6	10	18	12	24	9	17	14
ATCGAGCGCTCGTTTC	ref_5927_new	20	40	18	14	38	12	62	14	50	14
GAGCCCATGAATAGCA	ref_5927_new	0	0	0	0	0	0	0	0	0	0
AACCTCTATCCCCTTC	ref_5927_new	8	44	20	11	44	15	49	14	46	18
CCTTCCGGGCATGTTC	ref_5927_new	10	21	7	6	21	10	38	14	19	5
CCGATGGATCGGCAGA	ref_5927_new	19	32	22	25	54	18	37	21	47	18
ACCTTAAGAGAGCGGT	ref_5927_new	35	68	49	37	82	40	73	26	90	23
TCGGGTTATATCCGTT	ref_5927_new	73	178	86	75	112	63	161	59	158	59
GCACGACAATCCCCCC	ref_5927_new	36	50	37	19	58	26	73	25	72	23
ATAGTGACGACACTTA	ref_5927_new	0	0	0	0	0	0	0	0	0	0
CTTCGGACCCTCCGAC	ref_5927_new	70	148	84	59	166	79	174	69	169	59
ACTTATCGTTATCGTC	ref_5927_new	4	23	12	15	34	12	30	8	18	5
TGCGACTCCGCTCCGG	ref_5927_new	43	115	54	47	92	62	97	47	101	26
TATTGCCTAATCTATC	ref_5927_new	10	24	12	20	20	18	33	14	29	12
TCTATTCGCTGTGTTT	ref_5927_new	42	85	59	36	108	60	123	49	134	33
ACATTGCACACAACGG	ref_5927_new	5	29	16	7	24	13	33	7	38	8
TTGAGAACTGGAAAAC	ref_5927_new	19	46	14	18	58	20	41	22	62	18
TATCAAAGGTCAAAAT	ref_5927_new	1	1	2	1	1	3	1	0	3	0
TTTATGGACCACCACA	ref_5927_new	35	76	43	44	68	36	91	21	71	24
CGATTCTTACCTAAGA	ref_5927_new	7	25	14	7	29	9	30	9	36	6
TGAGTCGTGCGCTTTC	ref_5927_new	44	135	63	45	96	47	113	54	120	52
GCTACACACCATTTTA	ref_5927_new	7	19	10	5	32	7	24	6	27	6
ACGTTCCCATATGTAA	ref_5927_new	7	17	5	3	9	0	14	10	5	6
GCCCGAGCGTTTAGAC	ref_5927_new	32	33	26	15	33	17	42	18	32	16
GGTGCGCTCGGTACCC	ref_5927_new	0	0	0	0	0	0	0	0	0	0
ACTATCTTTCTAATCG	ref_5927_new	0	3	1	0	1	0	1	3	2	0
CGTCATTTCTTAGCTG	ref_5927_new	0	0	0	0	0	0	0	0	0	0
GGGTTAGGCTTTCGTA	ref_5927_new	10	22	17	11	21	11	31	10	32	14
GTCTTGTTGAATGGTT	ref_5927_new	0	0	0	0	0	0	0	0	0	0
TCTCTTGTGAGCATTC	ref_5927_new	2	6	2	2	7	3	6	3	10	4
GCAAAGGCAGAGTTGG	ref_5927_new	5	16	4	12	20	10	20	8	22	4
GCGGAACCAGCGGACA	ref_5927_new	23	58	40	35	66	30	64	26	67	23
TGCGGATGCTCATCAG	ref_5927_new	2	14	7	2	17	8	16	5	12	10
TAATGATTAGGTTTTA	ref_5927_new	9	17	11	9	18	5	14	9	13	5
GGGCTAGTGGCATCTG	ref_5927_new	53	87	47	35	81	27	116	38	110	25
GGATTCGGGGAGTCCA	ref_5927_new	39	70	40	35	62	33	82	35	70	34
CATTTATGGGTATCTT	ref_5927_new	9	30	12	9	16	5	34	4	22	6
TTTGTACATCCTGGGT	ref_5927_new	14	34	23	21	37	19	43	7	47	18
CATGCTCGCTCCGGGG	ref_5927_new	48	75	31	23	83	26	63	35	70	27
TCCGCTAATCAGAATT	ref_5927_new	4	7	2	5	7	3	6	1	6	1
CTTTGATGCGGAGCCG	ref_5927_new	0	0	0	0	0	0	2	0	1	0
CACGTTGTATCAGGGT	ref_5927_new	7	14	6	12	17	10	11	7	22	7
TAGCGCTCCCTCTAAT	ref_5927_new	34	88	27	21	86	15	106	20	84	23
ATTTGTCGGTTTGCTT	ref_5927_new	9	22	14	6	10	13	14	6	21	9
GGGCAGCTTAAGCTCG	ref_5927_new	24	65	39	33	60	38	72	39	59	30
TGAACGCTCGTCACGT	ref_5927_new	24	87	36	37	88	30	66	37	74	39
GCGTTCCTACAGCTCC	ref_5927_new	14	42	34	30	40	17	38	27	53	19
ATATACTTCTTAGTCA	ref_5927_new	31	65	46	28	78	30	79	40	81	35
CACCGCTCCTCACATA	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
GGTATTAGAGTTCATC	ref_3247_RC	4450	683	5758	4789	656	4562	742	4334	693	3971
GGATTCATCTAGGCTG	alt_3247_RC	411	55	531	404	61	414	57	429	54	323
CCGAGGATTAGTACGG	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
TGTGTGCTTTGGCCCG	ref_3247_RC	651	157	838	757	199	670	182	669	178	559
CGATTCATATGAGCTT	alt_3247_RC	634	86	758	686	95	584	106	597	99	577
CCTGTTATTTTACGGC	alt_3247_RC	139	22	148	140	18	123	24	122	24	114
TGGGACGTAATGATAA	alt_3247_RC	247	31	261	215	27	244	25	226	27	235
GGTACTTACCGCTCAT	alt_3247_RC	14	10	17	15	10	8	14	8	7	5
CGACCCATAATTAGCT	alt_3247_RC	249	35	368	290	42	292	34	271	36	269
GATACAAACCAGACCC	alt_3247_RC	312	29	358	329	37	287	29	272	49	300
TAATCGTGAACTTTTT	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
TGTTCGGTGGCTCCTA	alt_3247_RC	538	97	770	610	56	586	86	615	95	557
CTTATGTTTGTGTTTC	alt_3247_RC	84	21	110	92	13	85	11	85	9	81
GCTCCGGTTGGGTGGC	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
GCTAATTTTTGAGTGT	alt_3247_RC	193	25	209	198	19	163	29	193	32	185
CCTGCGGCGAATATGC	alt_3247_RC	173	22	174	190	36	142	42	153	28	132
GGCCCTCCGAACCAGG	alt_3247_RC	483	58	577	511	75	413	68	453	44	397
GTCAGTTTGAGAACAT	alt_3247_RC	129	22	163	119	21	132	24	131	14	96
TCGTTTTGTTACCGCC	alt_3247_RC	396	39	506	385	43	386	48	366	56	361
TTCGCTATTTACATGA	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
GCGGTAACAGTCCTTT	alt_3247_RC	352	40	468	404	38	353	47	367	51	341
GACGACGGTGAACTTC	alt_3247_RC	664	90	733	625	69	604	109	500	86	526
ACCTGCTTAAGAGGCG	alt_3247_RC	192	27	231	185	31	183	40	189	23	170
TGCGGTGCGGTCCGTA	ref_3247_RC	96	33	101	79	28	72	21	84	25	64
AGGTCTAAGCATTTGA	alt_3247_RC	124	31	144	140	21	119	10	111	13	141
CATTCTGCTCGTTTTG	alt_3247_RC	334	38	398	307	42	296	63	283	56	282
ACAGGTCACCACGAAC	alt_3247_RC	667	102	909	851	102	676	114	677	114	665
ATGGCCCGGGTCCTTA	alt_3247_RC	146	11	183	130	13	115	13	124	19	136
TGTAACCCGTATATGT	alt_3247_RC	731	129	848	678	90	735	91	620	90	645
CAGCATATGGAGAATG	alt_3247_RC	275	39	348	330	43	260	32	268	42	250
CTGGTCACATGCCGAT	alt_3247_RC	99	17	132	100	14	93	14	87	6	71
TTGTGTATTCGCGTTT	alt_3247_RC	112	16	170	143	17	136	16	87	27	97
TAGTCCTTTCCTGATC	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
ATTACTCTTTTGGATA	alt_3247_RC	433	55	565	424	49	390	52	442	59	367
TGGTTGAATCCGTGAC	alt_3247_RC	292	46	376	317	32	300	40	249	44	240
TCAGGTTTGTAGTGAG	alt_3247_RC	423	52	490	495	55	439	73	405	73	385
AAACGGAACAACCCTC	alt_3247_RC	2	0	0	0	3	1	1	2	6	0
TACGTACCTTGACTGG	alt_3247_RC	14	2	19	16	4	4	7	10	3	9
TGGGTATTCGACCGGT	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
TATTTTCTGGCTTCAA	alt_3247_RC	360	51	449	410	40	354	57	333	56	317
GTGGACAATAATTATG	alt_3247_RC	13	0	16	13	1	10	2	10	3	14
TTCGGATTCCGGCTGA	alt_3247_RC	700	115	981	805	142	731	123	723	137	560
ATCGTGTGCTCTGGCG	alt_3247_RC	186	32	264	234	43	205	51	220	32	188
TACACCCGGCAGATTC	alt_3247_RC	20	4	55	36	6	29	9	42	10	31
TTGGAGGGGTTCCGAT	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
GGGTAGTTGGGTCTGT	alt_3247_RC	1289	190	1682	1470	184	1358	195	1251	190	1149
TGCTACGGAACTCTAT	alt_3247_RC	96	20	107	98	19	102	16	111	18	98
CTCTGAGGGGTTAAAT	alt_3247_RC	105	18	154	113	28	125	18	149	20	102
TTATGCGTTAGCGTTT	alt_3247_RC	615	101	821	657	65	696	112	483	84	596
CACGCTCGGTTATTGA	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
TTTGCACGCAGTTGAG	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
GGCTGAGCGTAATGTG	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
TTTGAATGCTGTACGT	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
ATTTAGAATCTTTATA	alt_3247_RC	281	47	367	314	38	283	35	291	45	289
TTCTAGAGTCCTTTGG	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
GTTTCTCATCTTTTAC	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
CCTAGGATTCACGCCA	alt_3247_RC	258	38	325	257	22	243	57	246	44	226
GCTCCTAAAAGTTCAT	alt_3247_RC	1231	158	1469	1329	186	1136	196	1179	173	1093
TCACACCCGTCATCTT	alt_3247_RC	0	0	0	0	0	0	0	0	0	0
GATAGTGTTTAGTACG	alt_3247_RC	297	60	374	344	41	310	51	311	46	271
TATTTGTTGCCCCACA	alt_3247_RC	234	21	334	275	41	240	32	233	33	221
TACCTTGCTCGCGTTA	alt_3247_RC	441	54	512	435	75	380	61	408	53	340
GGCAAGTACGGCAGTG	alt_3247_RC	268	37	404	339	43	319	51	309	43	283
GAAAAATGGCAAGTAT	ref_6089_new	10	5	6	5	7	4	9	6	14	4
ACCTCAATATTCTGCT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
CCTCGCGTCCGGTCAT	ref_6089_new	8	24	3	4	9	3	14	3	10	1
TTTCCAAAGTCCCAGA	ref_6089_new	3	7	2	8	12	10	10	3	14	3
TGTAGGAATAACCTCG	ref_6089_new	82	113	82	80	121	66	143	78	146	65
GGCCCGGCCTGCTTTC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AGGATTTCTCATTGTT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
CTTAGTCCAGGTTAAT	ref_6089_new	12	18	9	8	21	11	21	12	23	14
TATATTCATAGGGATT	ref_6089_new	9	12	9	5	8	5	11	6	12	6
GGTGTGCTTGAATACC	ref_6089_new	62	165	83	83	201	67	163	77	157	68
CTTACAGATGGTTTAT	ref_6089_new	22	28	25	25	27	15	29	15	38	20
CGTCCTTTTCGATACC	ref_6089_new	26	40	32	22	41	28	42	24	41	19
CGGTTGTGACTATTAA	ref_6089_new	15	34	26	18	38	23	42	11	49	15
GTGCGCCCACTCACCT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AAGTAGCAGTAGACAT	ref_6089_new	28	29	21	29	35	21	36	21	39	27
TGTACTAAGTGAACTG	ref_6089_new	38	71	61	50	90	56	80	45	102	42
ATGAGTATTCGCGCGC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AGCTAGTTGGGTTTTG	ref_6089_new	11	10	20	6	9	7	21	10	23	8
GATCGGGGCACTCACG	ref_6089_new	38	56	39	32	49	40	72	21	84	29
TTCCAGTGCTTACCTT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AGGTTACAGCGATATG	ref_6089_new	6	14	3	5	8	11	11	8	17	14
ATGTGAATATCGTTCA	ref_6089_new	2	7	9	5	3	3	3	5	0	1
CATGAATGTCTAGATT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AGCTCGTTTCTGACAT	ref_6089_new	17	36	18	11	26	19	29	21	35	15
CAGCGCGCTTGGCTGT	ref_6089_new	23	37	19	21	16	15	36	15	46	12
GCTAGAGATCACTGTA	ref_6089_new	0	0	0	0	0	0	0	0	0	0
GCTTTCAAATCCTACC	ref_6089_new	6	8	2	4	14	8	7	6	15	2
GCCCGTTTTCCGACGC	ref_6089_new	21	43	29	21	49	23	29	22	52	16
TAGTCTAATCTCAACA	ref_6089_new	109	142	120	89	128	82	160	59	208	102
CAATTGATAAAGCGCG	ref_6089_new	36	41	31	38	63	33	54	37	40	27
AATCTTACTTTAACTC	ref_6089_new	41	74	49	34	77	46	76	41	98	35
TACCGATGGCCGCCGT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
GTTAATGTGGCTATCT	ref_6089_new	18	37	18	10	17	10	27	12	27	11
GCCGACTCAGTGTGTG	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AACATACTTCCATGCT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AATGCTTTCCATTTCG	ref_6089_new	18	22	13	7	21	9	19	17	21	6
TGGTTTAACTAGCTAC	ref_6089_new	9	24	8	13	33	7	27	9	25	11
ATTAAACCGCTTCACC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
TAACAGACCTCCTGCG	ref_6089_new	10	5	12	8	13	8	21	9	22	7
CGCGGCCTGGTATAAG	ref_6089_new	74	80	86	73	65	59	75	84	81	63
GGTGGCATCAGTGCCC	ref_6089_new	12	21	11	11	22	5	19	2	22	10
TACCTCCGTGAATATC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
CTATGCTTTAGTTTGA	ref_6089_new	19	27	22	11	28	17	36	15	37	13
CTTACTGTTCATTATT	ref_6089_new	3	10	4	1	6	3	9	4	23	4
TTATCGTACAACGGGC	ref_6089_new	29	40	20	17	39	13	35	14	39	12
GCGTTTTCGTGCCTTT	ref_6089_new	5	16	7	4	17	8	17	5	12	4
AGTCCGAGATACCTCC	ref_6089_new	32	71	41	39	77	28	70	39	67	21
TACCTAGCATGCTCTC	ref_6089_new	15	26	16	10	28	13	31	5	27	8
GTGCCTGCATTCTCCG	ref_6089_new	0	0	0	0	0	0	0	0	0	0
ACTCTTGGGATCTGGT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
TCCCGCACCTCTTGCG	ref_6089_new	22	34	31	26	50	24	44	22	59	13
ACAGGATATACAATCG	ref_6089_new	51	93	61	66	96	56	103	58	107	56
TGGGATTGCACTAACT	ref_6089_new	9	15	8	15	22	5	21	12	17	7
CTGGTTCCGTGCAGTA	ref_6089_new	0	0	0	0	0	0	0	0	0	0
TGTCTGGTCGTTTGGG	ref_6089_new	50	57	45	43	60	43	75	38	66	29
GGTGGCCGCAAAGAGC	ref_6089_new	91	135	128	79	132	99	149	90	140	66
TTCACGTGCGCCTGCG	ref_6089_new	28	43	35	21	56	18	42	27	57	23
CCGCTGCTTACCCCCG	ref_6089_new	60	119	76	46	126	61	132	54	139	49
TCTTAAGCTAACCGGC	ref_6089_new	2	1	0	2	4	3	2	0	3	3
GCTCAAATTGAGAATC	ref_6089_new	30	55	33	35	49	29	56	28	62	19
TTAGCTATTGAAGTCA	ref_6089_new	0	5	2	0	0	1	2	1	4	3
GCCCAGACGTGATTTC	ref_6089_new	9	22	10	10	25	8	24	10	23	10
TGGGACTGCCCGCTTT	ref_6089_new	5	11	6	2	14	7	17	10	12	6
CAGCAACAAGCGCCGA	ref_6089_new	0	6	1	3	12	3	7	1	12	5
CTAGTACTAGGGGTCA	ref_6089_new	39	83	46	48	99	35	99	45	120	36
ACGTGACTTCGAGCGT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
GTTGTGCCGCAATATG	ref_6089_new	14	16	13	10	9	9	18	4	25	10
TCATAAGTAACGTCCT	ref_6089_new	0	0	0	0	0	0	0	0	0	0
CTTCAAGTTTGTTTAA	ref_6089_new	17	28	24	20	33	16	44	13	40	20
GGGAGGAATATAACAC	ref_6089_new	0	0	0	0	0	0	0	0	0	0
GGTTCAGTAGACTACG	ref_6089_new	0	0	0	0	0	0	0	0	0	0
AGCAAATCTGCTGTAT	ref_6089_new	75	139	77	67	110	69	107	64	105	62
ATTGCGAACAAGGAGA	ref_6089_new	56	89	74	59	109	55	120	48	119	52
ATCCGTATTTTAGTAG	ref_6089_new	11	38	15	19	24	9	22	13	31	7
TAGTACCGAAGTGGAG	ref_6089_new	7	9	11	9	11	9	15	6	16	6
CTTAAACGCCTTCCTA	ref_6089_new	13	33	21	16	22	23	29	20	40	17
AATGAGGATCCCACAT	ref_6089_new	20	21	16	20	28	14	30	12	21	12
AAGTCCGGCGTATCAG	ref_6089_new	0	0	0	0	0	0	0	0	0	0
TCTACCTTCGGGACGA	ref_6089_new	5	3	4	7	9	3	9	5	8	3
GATATGTGGCTCCGGC	ref_6089_new	15	20	14	13	24	13	33	13	24	12
TCCGTACGGGACCAGT	ref_6089_new	15	28	13	8	37	18	27	8	35	10
TTTGTTGTAGAATGTA	ref_6089_new	22	61	42	34	46	35	53	48	53	22
TTGAATACTGATTAGG	ref_6089_new	0	0	0	0	0	0	0	0	0	0
CGATAATGGTTCGCGC	ref_6089_new	37	71	47	31	60	34	64	34	59	33
ACTATCGCGATAATGC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
CGCCTCATGGAAGCTA	alt_5539_RC	46	33	39	24	40	21	31	22	37	28
GCCATGATAACGGCTG	alt_5539_RC	61	73	62	64	74	55	70	38	42	42
CTATAGGTTAGTCAAT	alt_5539_RC	3	6	11	5	7	6	10	5	11	2
ATTCGCACCGCTGGGT	alt_5539_RC	140	152	213	153	166	145	160	145	171	148
ACTTGTTTCTAAATTC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
CAGGGATTGGATGCGC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
GTACACCTGTGTTGAC	alt_5539_RC	235	389	343	250	366	256	390	241	402	195
CTATTTAGTTGGAGAG	alt_5539_RC	134	225	153	143	209	127	217	132	203	136
GATGTGAAACTGAGGC	alt_5539_RC	67	85	68	86	70	83	100	52	80	60
CGAGTTACATCTCGCT	alt_5539_RC	28	37	41	27	30	23	32	32	31	23
AGGAGCGGTCTACCCA	alt_5539_RC	35	60	40	27	40	21	59	36	78	24
GATGGACTCATAGTGA	alt_5539_RC	16	19	40	21	25	18	19	12	24	17
CGATGGACCGTACGAT	alt_5539_RC	37	39	46	43	28	30	49	58	37	29
AGGAGCGGTCTGCCCA	alt_5539_RC	99	98	91	98	108	87	111	114	138	90
GTCCCAATTTTCCGAT	alt_5539_RC	30	20	25	32	27	32	24	30	38	39
TATATTAGCTCGTCCA	alt_5539_RC	37	32	43	44	54	28	45	33	56	33
GAGCGACGTTGTTCGG	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
CTACTTTCCGGTGGCG	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
TCAGCGAGTCAGTAAG	ref_5539_RC	42	64	61	34	60	42	60	44	70	34
ATAGTCGCGTTATGCC	alt_5539_RC	3	7	2	5	13	3	16	5	11	5
GTAGGTGGAATGTGGC	alt_5539_RC	5	4	12	5	7	6	4	7	9	9
TACCTGATGCCCGAGA	alt_5539_RC	14	28	27	23	28	23	23	25	34	16
GATCCTCGTGCCGTGA	alt_5539_RC	49	60	80	62	56	65	96	59	73	51
TCCCTTTGTCAGTCGC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
ATTGATACCAGCTGTG	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
CAGCTTCGTCGTGGGA	alt_5539_RC	10	23	11	7	12	12	18	11	16	15
CTTCCGCAGTTCAAGT	alt_5539_RC	65	85	68	57	69	57	99	39	74	50
ATTTGATATGTTATGT	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
CGTGGTGGCTCATGCC	alt_5539_RC	15	19	12	9	16	18	16	12	23	17
TTGCGTCTAGTCGACC	alt_5539_RC	28	54	45	18	60	35	58	20	59	21
GAAGCCTCATTGTCTT	ref_5539_RC	6	4	7	8	11	4	9	7	8	9
GTAGTCGCAAACAGCG	alt_5539_RC	13	21	18	22	22	18	27	18	22	15
TCCCCATAGAGCGGCG	alt_5539_RC	34	50	38	26	42	27	51	33	30	39
TCCAATTTGAACATGA	alt_5539_RC	33	28	29	27	36	16	18	22	37	29
GCTGCACCTGAGGACA	alt_5539_RC	6	11	9	5	15	7	11	7	9	10
ATTTGCGCGCTTTAGG	alt_5539_RC	30	34	22	31	17	24	27	12	27	15
ATATTCTCCGTATGTC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
ACTTGCATTTCTGGTT	alt_5539_RC	3	4	10	4	3	1	2	4	6	1
CTCTGGTTGGGAGTTC	alt_5539_RC	38	41	42	42	43	38	45	36	48	30
CAAATGGTTACATGGA	alt_5539_RC	73	75	75	76	78	60	79	67	68	64
CGTATATTTCGAACAT	alt_5539_RC	21	14	19	22	17	21	23	13	15	21
CTGATTAAAAGTCCGC	alt_5539_RC	3	5	3	7	4	2	8	0	2	4
GGTCCAAATCTAGGCG	alt_5539_RC	8	6	5	10	9	7	10	5	5	9
TCGGCTTACGGCCGTT	ref_5539_RC	163	180	212	189	189	186	205	152	195	167
TCGAGTTATGATGCAG	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
TGTGCGGGTCATTGCG	alt_5539_RC	34	59	54	59	51	65	67	40	61	52
TATCACTTGAGCGCTA	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
TTATCCCACCGGAGGC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
TTGTCCACCCGCTTTT	alt_5539_RC	11	6	4	7	14	12	6	9	16	3
GCTAGATGTGCATGTG	alt_5539_RC	4	13	20	11	11	13	18	8	17	17
GTAGTTTTCGTCATTC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
TCGGGACTTATAGCGT	alt_5539_RC	109	118	121	99	168	106	152	108	128	102
AGTACGAATAGAGCGA	alt_5539_RC	23	34	28	33	37	26	20	22	27	22
ACCGAGCATCTTCTTG	alt_5539_RC	28	20	38	21	38	16	26	16	34	11
ATTTCCGTCCAAGTAC	alt_5539_RC	146	193	204	167	184	154	192	124	211	146
AATTTTAGTTTATAAC	alt_5539_RC	0	0	0	0	0	0	0	0	0	0
AGGTGGGCGGCGGGTA	alt_5539_RC	78	90	81	68	66	75	89	64	92	80
TTAGAGGTAACAGGAT	alt_5539_RC	49	37	46	21	39	27	49	41	45	27
AGGATTATACATATAG	alt_5539_RC	4	1	8	1	4	6	5	1	9	3
CTGTTGGCTCCGTTAA	alt_5539_RC	63	59	58	54	60	50	67	43	78	44
CCCATGGGCTACACAG	alt_5539_RC	38	41	46	50	55	32	62	33	61	30
GAAACGCCGTGTGCGT	alt_5539_RC	49	55	60	61	57	49	51	68	62	41
TTTAAATCGTATGCCT	alt_829_upstream	31	20	29	24	20	16	19	23	19	20
GTCCTTATGCGGTAGA	alt_829_upstream	6	7	7	4	7	5	6	4	9	7
GGCTGAGGTTCTCCCC	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
AAAACTCAGTGTGTGG	alt_829_upstream	5	5	2	2	5	1	5	2	1	3
AACAAAGTTTATGTTC	alt_829_upstream	37	24	37	35	43	25	27	36	42	22
AAACATTACAGGCGGT	alt_829_upstream	11	9	8	3	6	4	5	5	3	5
TCGGTCTTTGACACGC	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTCTCTCTCATCG	alt_829_upstream	2	11	6	5	13	7	13	14	8	4
CTCCGTGTCGCTTGGC	alt_829_upstream	7	4	14	11	9	5	7	10	9	9
GATGTTAATCTATGCG	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
CTTGAAGCGAACGTTG	alt_829_upstream	113	176	130	101	174	130	189	101	227	82
CTTTTTCCCTTACAAT	alt_829_upstream	27	34	49	27	35	29	36	29	45	29
AGGTCGGCCCGGCGTC	alt_829_upstream	69	77	79	73	57	67	97	53	88	68
TAAGCCCGTTGATACT	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
AGTATTCCCCATTTAT	alt_829_upstream	21	32	23	15	42	24	31	16	38	23
CACAAAACCCTGGCCC	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
CGCAGCTTTTACCAAA	alt_829_upstream	60	87	70	40	76	51	80	55	96	55
TGCGCACACTTTAGCA	alt_829_upstream	19	18	18	11	18	9	21	11	27	7
ATCGCTTTGGCCGCCT	alt_829_upstream	12	21	14	22	12	18	25	18	22	11
TTTGCAGGTAAGGCAA	alt_829_upstream	149	183	205	165	216	150	201	161	242	149
GAGCTATCACGTGTGG	alt_829_upstream	36	44	45	28	48	28	48	40	46	33
CCGTTTATTCGAGCCG	alt_829_upstream	46	38	48	42	57	20	52	45	55	27
CTTTTATCTTTCAGTC	alt_829_upstream	29	41	37	38	46	38	47	29	37	28
AAGCCCACGTGTCCCC	alt_829_upstream	10	11	20	13	13	11	16	15	17	10
AAACTTAGCCCATCGT	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
GAGGGTTCACCATGCG	alt_829_upstream	18	40	44	33	27	18	31	23	38	18
TCAGCTTCAAGCTGTC	alt_829_upstream	40	42	47	40	47	26	43	41	46	29
GTTCGTAATATTTATT	alt_829_upstream	162	199	234	187	217	167	213	187	240	158
TGTTTGGATGCAGTCA	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCTGTTTTGTTAT	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
AGGATTTCGGACGAAT	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTAGAGCAGGAG	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTCGCTTGGGTCG	alt_829_upstream	22	23	23	18	33	22	29	23	30	22
GTCTTTCAGCCGTGGT	alt_829_upstream	6	9	5	5	5	3	3	4	7	3
CAGTTCATCGAAGTGT	alt_829_upstream	93	107	89	105	116	82	104	85	160	82
GCTGTCCTAATATGCC	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTGACCTTCGGTT	alt_829_upstream	12	13	19	13	17	11	14	9	13	9
TTTGCTGATGTGGACT	alt_829_upstream	2	4	1	2	1	0	1	1	1	2
TGTCTACTTTCAGTAG	alt_829_upstream	41	31	35	32	40	31	41	26	36	23
TAAATTATCTCCTCCT	alt_829_upstream	18	31	24	24	20	21	28	18	25	12
CGTTATGGTAGATCAC	alt_829_upstream	44	67	48	56	56	46	70	52	57	51
GTTCTCACGCAAACCG	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
TAATGTGGACCACTGT	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTTTTTCCTGAT	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
TATTGGGGATACTGCT	alt_829_upstream	14	24	12	24	21	14	29	12	27	15
ACACATCACAAATCTG	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGCCTTAGTTGGA	alt_829_upstream	2	7	10	3	12	14	10	11	14	7
CTTGAGCCTGTATGTT	alt_829_upstream	4	13	1	6	15	7	10	10	16	2
GTGCTTATAGGCTTAA	alt_829_upstream	31	27	28	30	44	24	39	38	33	20
TTATTTATTGTCACGC	alt_829_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTGTCGGTCATAC	alt_829_upstream	41	50	33	30	59	41	42	33	28	37
ACGTACCAGCAGGCAC	alt_461_upstream	40	21	46	46	31	33	22	24	32	35
TCGTATGTTGCCCGTA	alt_461_upstream	57	60	103	82	51	71	69	71	68	69
CCAGTTCCCGCTACCG	alt_461_upstream	6	5	13	9	14	7	8	10	14	1
AAGTGATTATAATCGT	alt_461_upstream	27	14	33	18	19	23	11	20	15	19
TGTTATTAGCTGGCGT	alt_461_upstream	21	15	23	20	14	16	18	26	18	31
GTAGTTGCATCCCCTA	alt_461_upstream	1	0	0	0	0	0	0	0	0	0
AAGCTTGCTAACTGCC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
ATACTTTCGGAGACGA	alt_461_upstream	51	21	60	43	26	35	21	55	38	38
GATTTCCCGTGATGGG	alt_461_upstream	8	3	13	9	8	10	7	6	8	3
TCTCGACCTGAGTGCA	alt_461_upstream	103	67	138	95	79	85	81	103	86	90
TTGAAAGCTATTGGCG	alt_461_upstream	112	112	124	114	96	99	109	73	107	85
ATTCTTGCGTTTAACG	alt_461_upstream	43	38	50	34	29	38	36	35	30	41
CAGACGTGAGTCTTTC	alt_461_upstream	86	85	96	129	70	90	66	117	94	86
GCCATAGGCGGATATA	alt_461_upstream	111	94	160	106	105	121	120	122	118	95
CCTCTGCTCGCCGATT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AGAATTGTTGCGGGAG	alt_461_upstream	37	29	32	36	20	40	27	27	21	28
CCAATAGAAGGTGCTT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTAGGAGAGCTCG	alt_461_upstream	14	9	24	16	7	18	10	13	19	21
AATATGGAAAAATTAG	alt_461_upstream	6	8	9	7	6	8	2	4	4	8
CAGGTAGTTTGCAGAG	alt_461_upstream	67	45	73	66	46	67	43	58	43	41
TGTAGTGCGGGCTGAG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGCCATGCTCAGT	alt_461_upstream	31	28	24	23	26	23	27	30	27	35
CTTTTGTCTTGCCATC	alt_461_upstream	76	61	97	92	76	68	87	77	84	62
GAAAAACCTGCCCTTA	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AATGCGGTAGAACAGT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GCGCAGCTTTCGAACC	alt_461_upstream	16	12	12	24	16	21	12	20	10	9
AGGTAGTCGCGTCTGT	alt_461_upstream	21	18	38	32	19	18	29	28	32	34
TATATAATCAAACGCC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTCCGGCGGCAGT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GAATCAATGGCGTCCG	alt_461_upstream	156	87	196	153	104	163	116	147	109	134
AGACGTGTTATGAATG	alt_461_upstream	17	21	21	23	10	14	15	14	14	12
TATTGAAACAGTCAAC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTATGGTAGCGAC	alt_461_upstream	5	2	5	8	5	1	4	1	3	0
TCTCGCTGGCTTCTCA	alt_461_upstream	201	154	225	231	196	181	153	158	143	198
TCCCGGTTACCGAACT	alt_461_upstream	20	27	44	37	17	22	31	25	16	28
CCAGTGGTCGTGCACT	alt_461_upstream	100	67	107	118	74	87	78	56	86	65
TCGCAGTTGCTACGAG	alt_461_upstream	93	97	86	109	72	58	90	89	83	66
CTCTGCTGTTCGTGCG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AAATTAGGACTACCGT	alt_461_upstream	14	8	22	25	9	19	10	19	10	11
AATTGCGAGGTGCTAT	alt_461_upstream	142	100	198	145	117	118	107	164	109	110
CTGTGACCTCAACATA	alt_461_upstream	73	60	81	71	56	73	62	92	65	56
TTCTTCTCGCACCTAG	alt_461_upstream	27	43	36	38	36	33	39	30	45	29
TAACTCTACTCACGGT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GGCGAGACATATTTGT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
CTCGACTACTTCTTCC	alt_461_upstream	1	0	4	1	1	1	2	3	0	1
CATTCCGCATCTTAAA	alt_461_upstream	15	13	28	19	21	13	22	25	21	9
AGATTATTACAAAGTG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AACGAAAGACTTCAGA	alt_461_upstream	28	32	36	38	24	27	17	38	35	25
TAATTTCCTGCATACT	alt_461_upstream	32	15	45	27	21	35	19	26	27	31
GCACTAAATCGATTTA	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
TCTAAGCATAATGGGA	alt_461_upstream	14	13	26	26	7	22	11	16	16	17
TCATTAGCGATTGCAA	alt_461_upstream	34	43	47	39	43	52	29	44	32	37
ATGATGTCTTGCACCC	alt_461_upstream	57	43	52	63	39	51	54	53	41	52
GTTGAAGGTCTCTGTA	alt_461_upstream	124	88	157	157	110	138	119	111	131	95
TGAATCACCTGAATAT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
ACAAACCATGTCGGTT	alt_461_upstream	64	55	71	46	58	53	44	52	65	51
GCTCCGCCCAAGTTTG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GGCACCTGGTTGTATG	alt_461_upstream	56	38	47	45	35	38	34	44	31	37
TACATTCCCTCTATCT	alt_461_upstream	57	55	72	59	55	52	37	48	57	41
TGACCGTTAGGCCTGG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
CCAATGGAGCCTACTT	alt_461_upstream	15	12	18	34	10	27	17	19	14	17
GGCAGTCTGGATACTA	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AGATCATTCTTGGCCT	alt_461_upstream	10	4	13	6	7	10	4	3	5	2
GATATGTATTTGACAC	alt_461_upstream	54	30	53	44	37	41	41	44	47	48
GGTATCCGTTCCGGAC	alt_461_upstream	12	2	7	3	9	5	6	11	4	10
GTAGCGTGAAATATTC	alt_461_upstream	20	7	15	13	11	15	12	14	6	16
CGTTCTGGTCTGGCCT	alt_461_upstream	3	6	8	7	8	5	0	4	1	6
AAGCAGACGTTGCCGC	alt_461_upstream	66	54	66	56	49	54	57	63	53	56
TCGCCTGGCTGCATGT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
CCATGAGTAGCCAACC	alt_461_upstream	13	10	18	15	19	11	9	16	5	8
CTCCATCGTTACTGAT	alt_461_upstream	5	3	4	2	2	4	1	2	3	5
ACCGGCACTGAAAATA	alt_461_upstream	102	80	129	118	82	99	75	112	85	86
TCTTAACACGTGCGCC	alt_461_upstream	62	43	65	70	63	71	66	49	55	57
GTGACGTGGCACTAGA	alt_461_upstream	264	186	328	293	193	236	171	246	205	222
TGTACACCGGCGCAGC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
ACGGATGATAGGCTAG	alt_461_upstream	23	32	26	27	30	24	23	16	25	20
TAATCAACAAACAGTT	alt_461_upstream	6	7	8	10	4	1	7	7	5	9
TCATCTTTCTCACCAT	alt_461_upstream	94	60	105	95	47	89	59	84	62	70
CGATCTATTTCATTGT	alt_461_upstream	77	45	74	61	37	59	41	51	56	51
TCTTCGTTGTTCATCA	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAGTGTGATTCGT	alt_461_upstream	67	43	78	84	54	47	43	70	56	67
GGTGCGGGGCCTGGAC	alt_461_upstream	47	24	63	44	27	34	30	28	31	51
CGGTCTGCGGCCTATG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GGCGCTTACCCTTCCA	alt_461_upstream	101	124	133	120	111	99	136	118	147	81
GCAGGATCGGATGCCC	alt_461_upstream	43	30	36	44	38	34	30	39	22	42
TCTACTTGGTTGCTTT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GATGTGTAAGCCAAAT	alt_461_upstream	5	15	17	13	16	6	9	12	16	10
ATTTCAGACCGCTATG	alt_461_upstream	82	46	103	87	50	77	66	71	53	75
GGGTAGTAGGATCTAA	alt_461_upstream	18	11	18	18	9	13	12	10	12	14
AATTCCGTGTCCAGGC	alt_461_upstream	56	54	65	57	27	53	53	52	51	35
GTTATGCTCCTAACTG	alt_461_upstream	101	61	122	93	68	89	55	95	93	97
GAGTCATATCTGGCAT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGTGTAAGGTGGT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTCAAAAATTCCC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AGGGAATGTTTGTCAA	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCGTGCTCCGAGG	alt_461_upstream	194	121	215	169	129	194	142	177	171	196
GACTAAGTAGGTTTGG	alt_461_upstream	33	14	21	27	12	21	13	16	12	27
TTGGACTTGTGAACTT	alt_461_upstream	8	8	9	16	6	7	9	9	8	8
GTTCGTATCCTAAGTC	alt_461_upstream	20	10	23	18	10	14	17	15	16	22
CTCAGGACCTCTTAGT	alt_461_upstream	32	32	54	38	46	38	32	47	27	33
ATAGTGTTGACCTTAG	alt_461_upstream	45	18	42	32	24	27	23	49	26	33
TGTTCCTCCGTTGTGG	alt_461_upstream	3	1	1	3	2	5	3	3	2	1
GTGTTATGCTGCGCTA	alt_461_upstream	8	7	11	8	4	6	0	11	10	3
TTTGCTCCCCGATTTT	alt_461_upstream	16	33	15	22	31	16	27	14	30	10
CTAAACGAATATGTGT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AACTCTCACCGAAGCT	alt_461_upstream	11	14	10	8	15	6	8	11	15	17
AAAGCGGGACTCAACT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
ACTATTTATATCGAGT	alt_461_upstream	25	10	30	35	25	31	25	23	17	27
GCATTGATAGTTATTG	alt_461_upstream	35	24	36	27	21	22	29	31	26	35
TCTTACTCATAGCTGG	alt_461_upstream	42	41	54	34	50	29	43	27	70	35
CGGTAGGCACCTGTTC	alt_461_upstream	14	15	17	10	8	16	9	16	9	16
AGACTCTGGCCAGAGC	alt_461_upstream	9	3	6	13	7	16	7	8	3	15
GGTACTTCCTGCTATC	alt_461_upstream	4	3	8	5	2	4	1	2	0	4
TCTAGAAAGTGTAAAA	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AACGCCGATCCAATTC	alt_461_upstream	6	3	8	5	5	5	6	4	4	1
GGCGTTTGTCTCCTGG	alt_461_upstream	14	13	8	7	5	11	14	11	4	7
CCTTTAACCTTGAGGC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AAGGAATCTAAATCTC	alt_461_upstream	59	28	63	50	36	61	38	48	41	44
ACCAGGTAATTGGCGG	alt_461_upstream	107	78	108	104	72	102	52	83	84	113
TCGTTCTTAGTTTAGC	alt_461_upstream	113	99	170	169	82	137	99	129	122	98
CACTTTCCAAAGGGAC	alt_461_upstream	58	57	73	60	41	48	49	57	53	43
GTGGTTGGACGTCTTT	alt_461_upstream	305	226	406	352	264	287	232	319	289	285
CCCGGCCGTTGGTCCC	alt_461_upstream	66	80	89	76	75	51	83	69	85	51
AGCATAGCGCTTTTTC	alt_461_upstream	19	9	24	22	12	17	12	17	10	12
TCGCTATCAGAACTCC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
TTCACTCCAGAAGATG	alt_461_upstream	9	9	16	8	6	10	12	12	27	12
TTTCTGTGTACTTAAT	alt_461_upstream	8	4	15	8	5	2	8	8	13	6
GGCCTTTTTCCCTCTC	alt_461_upstream	40	40	41	50	30	29	27	36	27	31
TAGCCTATCTTGCTAG	alt_461_upstream	12	7	12	10	14	8	8	7	4	14
GACCCTCAAAGTTTGT	alt_461_upstream	3	4	5	5	5	10	5	4	11	5
TATGTTGTACCCCGCC	alt_461_upstream	22	41	41	32	41	28	30	22	29	29
GTAGTATAGCTTGAAT	alt_461_upstream	92	74	93	70	79	79	64	77	70	69
GGTCCAAATAACTGTG	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
AACCTGACAAGATTGA	alt_461_upstream	44	40	49	44	32	26	34	41	37	38
GATAGTGCCTCTTTGT	alt_461_upstream	35	19	32	26	26	25	30	24	20	23
ATTCGTCGGTATTTAA	alt_461_upstream	21	17	25	26	13	19	15	30	19	13
TTCGGGCAAGGTGTCC	alt_461_upstream	59	71	99	108	64	77	76	79	64	71
AGTCACGGTTGGAGGA	alt_461_upstream	4	3	6	2	0	8	0	6	9	5
CAGGCGCCTCATACGT	alt_461_upstream	41	18	31	31	18	31	24	28	31	18
ATGTTTCACTCTGCAG	alt_461_upstream	3	4	7	4	2	2	6	10	3	1
AAGACGAGATGGCTCC	alt_461_upstream	96	52	107	107	51	93	59	100	53	88
GGTCTGCATCATGATC	alt_461_upstream	67	55	95	74	40	47	39	62	47	52
AATGGCCTTGCAGTCT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
GCATTTTTCACTTTCG	alt_461_upstream	37	23	25	37	22	32	23	34	14	24
ACTAGTGCTAGTATTC	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
ACTCAAAGCGAGAAAT	alt_461_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGTTGAACGGTGC	alt_461_upstream	18	33	25	22	35	15	30	17	37	13
TTGGGTGCGAACCTTA	alt_461_upstream	101	90	113	94	103	115	122	88	112	82
CAGAACGTTGCTGGTT	ref_2984_missing	16	18	27	29	20	21	21	22	5	16
ATATTTCTTTGCGGCC	ref_2984_missing	0	0	0	0	0	0	0	0	0	0
CAGCCGATAGACCGCG	ref_2984_missing	19	13	19	17	16	14	9	18	8	15
GCTGGGTTCGCATAAA	ref_2984_missing	130	70	177	142	84	156	95	129	92	142
ATCGATCGGACAGCGT	ref_2984_missing	95	65	115	94	57	103	62	80	65	79
CCAAACTGGATATAGA	ref_2984_missing	276	152	366	307	200	304	166	270	174	279
AATTTTCTCGATAATT	ref_2984_missing	0	0	0	0	0	0	0	0	0	0
AGGTTGCTCGGACCTT	ref_2984_missing	104	69	153	105	85	109	74	116	102	77
GCGGACGATCTCATGC	ref_2984_missing	54	30	54	54	39	49	43	54	33	48
TTGGAGACTAAATTGC	ref_2984_missing	0	0	0	0	0	0	0	0	0	0
CCCCGCCCTGACGGAC	ref_2984_missing	12	8	12	13	8	16	5	27	12	16
GTTTCCTCTTATGTAT	ref_2984_missing	11	13	15	13	9	21	6	20	9	15
CGGTATAACTCGGCTC	ref_2984_missing	84	40	106	69	47	95	55	76	51	63
GCTACCTGGCCGTACA	ref_2984_missing	87	54	83	79	55	77	66	70	65	73
ACCGTCTTATCCAAGG	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
CTTGACGGCTGCATGC	ref_5572_reverse	5	7	13	1	5	3	3	8	7	12
ATATATGGTTTACGAA	ref_5572_reverse	56	36	52	50	39	52	41	43	28	39
AGTAGGTCCTGTGGGT	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
GCACGAGCTCGAGTGT	ref_5572_reverse	67	53	89	65	54	74	56	68	60	74
GACTGGGACTGGTTAA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
TAATGCTTTATATCGA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGTTCGCCCGTTG	ref_5572_reverse	78	66	103	84	82	115	85	82	65	80
GGCAACACCGTATCCT	ref_5572_reverse	133	121	178	147	97	140	124	133	130	127
ATCGTTGGGTGAGAGG	ref_5572_reverse	108	104	125	110	83	66	118	105	89	88
TTCATCCCCGTTAGAA	ref_5572_reverse	2	6	4	6	10	6	12	4	13	6
GCTTTGGCCTTCTTTG	ref_5572_reverse	25	18	37	39	20	27	17	45	26	27
ATAACTCCCCGGCTGG	ref_5572_reverse	7	41	8	7	39	6	27	8	26	6
ATATTAAATATTATAG	ref_5572_reverse	34	28	50	16	34	40	24	36	31	28
TTCGTAGTATACACGA	ref_5572_reverse	136	94	168	149	94	148	106	133	110	126
TGGGACTGTGTGTAGA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTTGTCCTTAGGA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTCTATCGAGGA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGGGGATGCTATG	ref_5572_reverse	28	25	49	51	27	24	34	35	25	35
GCAATGCAATCGAAAA	ref_5572_reverse	80	56	107	76	53	78	65	65	71	75
TGCCTAATGACTGTGT	alt_5572_reverse	129	129	172	154	121	146	128	127	129	119
TTGTTTTCATTACAGA	ref_5572_reverse	8	10	14	9	14	15	7	5	3	13
GGCGGCGTTTCTCTCT	ref_5572_reverse	280	102	328	226	110	241	99	244	111	235
TATGGTCTGCCGGCTA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
CCATTCTGAGAAAATG	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
ACTACCTGCGCTACAA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
CAAACCCTATCGTATT	ref_5572_reverse	99	102	106	115	130	93	103	99	92	91
AATCGAGGTCTCATCG	ref_5572_reverse	49	33	48	45	33	38	34	38	16	28
GGCGCACTACTATCAG	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCGTTCGGGTTTC	ref_5572_reverse	11	6	7	6	11	11	7	9	16	8
TATGGGATCTATCACC	ref_5572_reverse	11	5	12	4	8	11	5	12	8	3
TCATTTTCTGGTGTTC	ref_5572_reverse	5	1	5	2	3	2	3	1	2	2
CTTATGTAGGTCTCTC	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
CCCCAGGGATCTTTGA	alt_5572_reverse	248	208	312	249	231	240	240	250	266	220
GCGAAGCTAGCGGGTC	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTAAAATTTTCAC	ref_5572_reverse	6	1	5	4	4	4	2	7	2	3
CATGTCCCATAGTTCT	ref_5572_reverse	7	7	15	16	11	3	10	16	4	5
TCCAGGCCTCGTACAT	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGGGTTTCATAC	ref_5572_reverse	11	18	28	15	19	21	22	17	21	23
GCAATTATTGCGTGCT	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCCGGGTCTTATC	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCACGTTCGCCCA	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
CATTATCATGAGTGCC	ref_5572_reverse	45	38	51	47	30	39	33	47	33	40
GGGCTATGCTTCAGTG	ref_5572_reverse	48	43	67	56	38	42	40	44	56	48
GTCGTACCAGCACTTG	ref_5572_reverse	38	39	44	46	31	44	38	37	59	43
CGACCGCATCTTCTTG	ref_5572_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGCTCGTTTCAGG	ref_5572_reverse	6	3	5	7	7	3	6	4	5	7
TTGGGCAACAGGGATT	ref_5572_reverse	39	25	33	36	29	28	43	31	28	34
AAATTATGATGGTACA	ref_5572_reverse	20	14	22	23	13	19	16	17	16	21
TATCCGGAAATACCCG	alt_5747_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTTACGCCTTG	alt_5747_new	8	11	11	3	19	7	9	9	12	5
TAGGGATAGGACTCCG	alt_5747_new	174	305	188	170	311	186	347	162	354	149
CCACTTTCATGGAATG	alt_5747_new	44	62	40	39	53	35	44	34	55	17
TTGACTTAGCTCCCTT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
ATAAAAATTATGTTAC	alt_5747_new	16	19	19	15	39	16	23	10	35	25
CTTCCTGTCTTCTCAG	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GATTTTTTGTCACCCC	alt_5747_new	12	33	24	25	37	21	28	14	24	17
TGTAGATAACGATTGT	alt_5747_new	4	5	2	1	7	5	10	3	12	3
CGTATTACAACACTCG	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GTTAAGACCTATCCCT	alt_5747_new	10	16	13	5	12	6	17	5	17	10
TCACCTTATCCTCAGA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
TAGGTGCAGCGACAGC	alt_5747_new	0	0	0	0	0	0	0	0	0	0
ACCTTCACTGGGGGGA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
TATCACGATTTAGCGA	alt_5747_new	53	81	74	42	83	46	76	51	82	60
CGTTGTCTGCTGGCAA	alt_5747_new	86	140	115	81	190	87	158	83	159	89
CTTCGGGCTGTGATCG	alt_5747_new	14	28	14	18	27	15	35	18	51	10
TTTGTATCCTGTCTCT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GTAGGTCAGGTAACTT	alt_5747_new	28	65	30	35	49	31	57	44	62	30
CATTATAGCAGATCGG	alt_5747_new	51	66	61	60	60	50	89	45	86	30
TACCGTGGTTTGGGAT	alt_5747_new	6	10	7	4	11	11	10	4	8	5
TGCTCTCGTCTCAACA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
ATCAAGGTCCCATGTA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
ACGCTTTGATGTATCC	alt_5747_new	19	34	22	17	25	13	36	14	37	15
TTATTGGTTTGGCGTG	alt_5747_new	34	80	28	36	64	43	54	31	93	40
GAGCTTAGGGGGGGCC	alt_5747_new	222	351	288	254	365	226	382	234	359	236
GTATGACCCGGGTGTT	alt_5747_new	68	90	64	65	102	50	117	46	121	49
AGCTTCGTTACTCTGA	alt_5747_new	33	51	32	36	44	43	62	14	65	32
ATGCCGTGTTCGCATA	alt_5747_new	37	65	36	27	49	24	66	21	61	33
CCGGAATTTGTCAGCG	alt_5747_new	15	17	13	4	21	6	18	6	21	9
CCGATAGTGTTCTATA	alt_5747_new	2	4	1	0	5	1	0	0	3	3
TCTGTGGTCACAAAGT	alt_5747_new	13	25	12	9	24	17	39	10	43	19
CTAAATTGGTCTCACC	alt_5747_new	32	84	39	40	69	39	60	35	77	44
ACGGTCTCCTTCTGCC	alt_5747_new	24	65	29	31	73	23	88	32	105	19
TGCTCTAGTGATGGAT	alt_5747_new	19	37	24	19	28	18	40	14	31	17
GTGAGAGATCTTCTGC	alt_5747_new	5	3	8	11	9	6	10	5	10	1
GACAGGTAGGACACCC	alt_5747_new	25	50	30	24	53	20	46	12	44	24
GTTACTTCCACGGACC	alt_5747_new	31	64	38	36	73	44	55	45	75	29
TTAGTATCTCGGCCCT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
TGGGACTGGGAAATAT	alt_5747_new	8	21	16	11	31	14	27	15	16	12
GTTGGAACAAAGGTTA	alt_5747_new	39	86	44	42	78	37	88	37	95	18
CGGAAATTCGATAGCA	ref_5747_new	100	132	119	89	159	79	149	98	167	102
ACCTTCACTGGGGGGG	alt_5747_new	39	91	45	42	71	47	47	38	58	32
GCACCAATGGTTAGAA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GCCCTACCTTATTGTC	alt_5747_new	17	22	25	13	40	14	23	13	36	10
CGTCACCAAGGTAACG	alt_5747_new	0	0	0	0	0	0	0	0	0	0
CCAGGATTTTGTTCGG	alt_5747_new	29	71	48	37	107	29	63	39	78	33
TCATCGGCTTTATTAT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GTTCGTTCCCTCATTA	alt_5747_new	27	38	38	26	27	26	41	23	45	29
TCTAGCCGTCAGAGTT	alt_5747_new	13	31	8	12	30	9	29	15	32	12
TGTAGCCGCAATGGTG	alt_5747_new	24	45	27	23	38	24	36	15	52	25
ACGGTGTAGAGTGCTT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GATATAGATTCGCCTC	alt_5747_new	2	4	2	3	3	0	8	0	6	1
GAGGGGATCCTCGGAT	alt_5747_new	2	1	0	0	0	0	1	0	0	3
GGACTTAGGACTGCTG	alt_5747_new	11	12	12	16	19	12	28	15	23	6
CGGTAAGCTCGTCTAA	alt_5747_new	28	62	57	40	81	46	80	36	64	25
TAATGCCGTTGGGGCC	alt_5747_new	220	356	289	222	376	238	372	231	433	252
AGGGTCCGCACCTGTG	alt_5747_new	2	10	6	6	7	5	7	4	11	4
CTTAATAGTCGACGGA	alt_5747_new	52	121	89	56	121	53	154	56	135	50
GATTATGACCATCTGT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
TGTCTTGCTTCTGTAG	ref_5747_new	22	42	35	24	34	25	45	22	48	21
TGGTCTACCACGGTTT	alt_5747_new	25	44	18	21	54	26	46	28	44	21
TGTAGCAATGACAGGC	alt_5747_new	45	86	67	40	95	58	114	43	89	50
AAGTCACGGCAACTTA	alt_5747_new	0	0	0	1	0	0	1	0	0	0
CATCATTACAAAGTAT	alt_5747_new	40	81	47	45	107	36	111	57	99	43
CGCTAGGACGTCACGT	alt_5747_new	4	3	4	2	4	3	8	2	6	0
CGACTGCCAATGCCTC	alt_5747_new	105	159	156	109	198	111	222	114	182	104
GCGGATTTGTCCCCGT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
ACGTCTTTTTCTCTCA	alt_5747_new	27	35	40	18	44	19	25	23	34	24
TAGTATTTTCTGTCCT	alt_5747_new	0	0	0	0	0	0	0	0	0	0
AGTGCACTATTTTAAG	alt_5747_new	18	25	26	18	22	12	35	14	35	28
CGCGGGACCTCGATTA	alt_5747_new	68	77	69	45	90	48	91	64	90	52
GGCGGGGATGAATGAC	alt_5747_new	13	13	16	13	24	12	32	11	32	22
ACGCAGAATACTATAG	alt_5747_new	14	16	9	6	6	6	14	6	17	6
AGGTTAGCTATTAAAT	alt_5747_new	29	34	30	22	33	21	33	28	31	15
TTACTGTAGTTTTATT	alt_5747_new	10	16	10	9	14	3	32	5	19	11
TTTAGATTTTGCTGCG	alt_5747_new	34	68	41	39	63	22	61	32	61	27
GACTCCACCAGCTGCA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
TCCGTTTCCTTAGTGT	alt_5747_new	3	2	7	4	5	5	3	0	7	1
GTTGGGATGTGCATCG	alt_5747_new	283	512	372	281	492	289	529	272	518	256
TGGTACTCACTGCGGA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GAGGCTATGATCTCAA	alt_5747_new	0	0	0	0	0	0	0	0	0	0
GGATATGAAGGCTTCT	alt_5747_new	28	28	23	14	32	20	35	29	31	23
TTCCCATAGGTCATGG	alt_5747_new	23	23	34	19	34	29	32	22	22	24
CCATTCGGAACCACAG	alt_5747_new	17	17	7	19	27	9	30	10	30	11
TCAACCCAGCGTTGCA	ref_4000_RC	122	155	141	114	146	106	174	112	165	117
CTACGACGCTTCCCTC	ref_4000_RC	139	161	182	160	187	134	188	158	191	129
CATGTTTGTAATCCTG	ref_4000_RC	37	36	51	35	39	27	39	32	25	28
CTGATACTCGTTACAG	ref_4000_RC	0	6	7	3	15	1	8	8	9	5
ATTCCGCCATCACGCA	ref_4000_RC	74	101	102	97	89	71	96	73	81	67
GTCCACGCCATTGCCT	ref_4000_RC	12	33	13	14	22	7	22	13	19	2
TCGGCCGGCATAATAT	ref_4000_RC	17	24	24	19	22	19	24	12	25	24
CATATTACTTGTGTGC	ref_4000_RC	13	18	19	11	20	15	20	11	29	10
AACCTCTGATTGGGTA	ref_4000_RC	23	43	30	36	41	25	31	28	38	18
GCAGAGAACTTTTCCA	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
GTCGCGAGACATTTCT	ref_4000_RC	6	5	3	4	6	5	13	6	4	3
TCTTCGCGTCACGCCA	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTACATGAGCCT	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
TGCATGTTCCGAAACA	ref_4000_RC	44	38	48	41	63	41	56	34	71	30
TTACTTATATAGCTGT	ref_4000_RC	156	212	157	143	177	137	202	139	209	125
TGCGGCTGTTAACCCT	ref_4000_RC	43	50	40	41	47	34	63	39	49	34
AGACGTCTGTACATTT	ref_4000_RC	13	16	11	7	18	5	7	13	11	8
TCGCAGCATTAATCAA	ref_4000_RC	42	58	41	47	67	40	65	46	50	29
CCGTAGTTGTGCTAAC	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
TATCTTATTGCGCTTA	ref_4000_RC	8	3	6	3	7	1	10	4	6	3
CTGTCAGTGAGTGTTG	ref_4000_RC	7	16	5	10	18	8	9	7	10	11
CCTCGGTTTCGACCGC	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
GCTTGCCGAGTTGTAG	ref_4000_RC	63	98	79	84	101	64	118	82	106	60
GACTGTGTTAACAATA	ref_4000_RC	83	97	89	71	78	75	89	71	108	65
TGACCCCGGCCAGCAT	ref_4000_RC	19	28	25	22	36	20	39	29	46	26
CGAACCGCTCTCTTGA	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
AAAGGATAGTATTTTG	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
ACCTGCTTCAAGCTCC	ref_4000_RC	41	69	43	33	53	34	67	37	76	34
TCCCTGAGTTTCGGGA	ref_4000_RC	25	28	21	25	29	25	41	31	30	15
TCCTGAAAAGAGATAA	ref_4000_RC	11	31	20	18	21	12	27	11	24	18
CGCTATTCTAGGTATG	ref_4000_RC	38	40	41	35	50	43	43	33	62	32
TAGTGCGTGTGGCCTG	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
TCTACTTGGTTGTACA	ref_4000_RC	40	41	26	39	57	30	40	31	38	31
AGTTGGCGTTGTTTAC	ref_4000_RC	18	22	31	22	37	10	20	16	20	15
TTGCCGCTGTTATCCT	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
GGAAACGTTAACTACT	ref_4000_RC	74	120	112	98	113	77	107	94	139	90
GCGTATTGCTCGATCC	ref_4000_RC	17	29	23	24	21	12	23	6	25	11
TGTGAGTCCCGTACGA	ref_4000_RC	133	160	146	135	187	142	187	118	156	114
GAATTGTGGGTTGAAT	ref_4000_RC	28	28	27	31	61	20	41	30	64	20
TAAACTGATAAGACCG	ref_4000_RC	18	25	30	24	44	18	49	22	34	28
CCTTTCTTTTTTTAGT	ref_4000_RC	19	38	30	21	53	27	25	21	39	24
AGTGAAGTCTGCGCAC	ref_4000_RC	13	15	9	18	17	12	9	14	17	13
CAAGCAATTAGTGTTT	ref_4000_RC	13	18	24	13	36	11	30	14	29	20
AGACCTATTTTCTCCT	ref_4000_RC	116	129	121	95	119	87	124	84	153	100
TAATTGTTGTTTCAGC	ref_4000_RC	44	72	42	42	65	40	80	34	51	35
CTTCATTGACTAGGGC	ref_4000_RC	14	16	25	17	24	13	23	17	19	22
TTCAAACTCGTACATA	ref_4000_RC	6	15	14	15	18	14	16	10	12	12
ATGCCCGCTAATCCCA	ref_4000_RC	42	52	28	35	56	52	62	44	63	26
CAGATTCCGTATGGCC	ref_4000_RC	13	25	27	37	30	22	23	35	34	11
GCCGCGACTGCTCTGT	ref_4000_RC	34	56	52	48	45	34	44	42	65	28
CCGCCGGCGCCTGCTC	ref_4000_RC	2	20	7	7	21	4	23	9	17	3
TGTATGCAACTAATTC	ref_4000_RC	11	22	30	14	19	18	33	15	21	15
TCCTTTTTGTGCCGTA	ref_4000_RC	34	39	43	25	55	25	49	17	47	27
TCACCAAGGCGAACTC	ref_4000_RC	20	21	12	20	15	19	20	11	17	22
AAAGACAGTGCAGGTG	ref_4000_RC	71	131	103	105	113	71	113	91	122	63
GGTCCAATTGGCCTGA	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
CCCTGCTGCACAACGC	ref_4000_RC	7	14	8	8	2	7	4	10	15	6
AATCGGACGATTGGTA	ref_4000_RC	2	3	10	2	0	3	6	7	2	2
GCTATAATGGCGTTTT	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
CCCTGGGCGCCCGCGC	ref_4000_RC	59	53	67	62	50	62	70	64	72	52
TAGCTTTTCAATATTG	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
TATTGACAACATTATC	ref_4000_RC	44	42	47	58	48	31	55	42	49	35
TGCTCAATTAAACAAC	ref_4000_RC	12	20	24	15	12	11	12	15	10	14
TAAGCTAGACCTCTTC	ref_4000_RC	11	34	24	15	25	21	29	13	22	19
TACTAGCAATCTCTTA	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
CATAGACGCTGTTGTT	ref_4000_RC	7	13	8	2	14	6	7	6	11	8
AGCTGATACCTAGTAT	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
ACACTGTCAGATTTTT	ref_4000_RC	23	33	27	18	31	21	35	24	24	15
GCGCCCTCACTCGTGC	ref_4000_RC	1	3	8	4	7	6	10	0	6	2
GCAACGGTGCTCTGGC	ref_4000_RC	8	15	22	8	30	5	17	18	23	4
CGTCATTCACTCCTGA	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
TGCGTTTATCGGAACT	ref_4000_RC	12	12	15	11	17	6	11	8	22	14
ACCGAGGGTTGTCCGG	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
GGCGTGACATAAATCG	ref_4000_RC	0	0	0	0	0	0	0	0	0	0
TCTTCGTCCTTAATAG	ref_4000_RC	10	16	14	11	19	7	14	8	13	8
TTCGCCTTAGGGGGGT	alt_850_upstream	4	6	4	1	7	4	7	3	6	8
CCTCCGCAAAGTACCC	alt_850_upstream	17	36	31	21	34	21	31	15	33	11
CTACGGCTGAAGTCAA	alt_850_upstream	2	6	4	1	4	3	5	5	9	2
TAAAGAGCGTTTCTTC	alt_850_upstream	9	11	6	12	11	6	22	10	7	7
CCCGGGGCAGTTCCGT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAAGATCCTAATC	alt_850_upstream	0	0	1	0	0	0	0	0	0	1
TACTGGGAATGAGACT	alt_850_upstream	16	35	22	29	51	29	38	22	35	13
GAGTGCCCAAAGCATT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGGCCGGATATGT	alt_850_upstream	26	39	32	18	37	18	48	16	35	18
GGCCGAAGATGTGCTA	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TGACGACGTCTAACCG	alt_850_upstream	21	26	21	13	30	14	27	12	30	10
GCCGGACTTGTAGTTT	alt_850_upstream	26	32	30	26	24	11	40	17	45	9
TGATCAATAGAGGATA	alt_850_upstream	72	106	79	63	107	67	106	49	111	56
GACACGGCAATATAGT	alt_850_upstream	9	4	8	3	7	3	11	4	5	6
GTCCGACTATTTCTCT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TGACATATTAGTTTAC	alt_850_upstream	12	20	13	7	8	12	20	8	9	5
ACAATGCAACGGACGC	alt_850_upstream	18	57	26	20	40	21	39	24	38	22
ACTTTGAGGGCTGCAC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
GAGGATGAGCGCGCTC	alt_850_upstream	168	236	180	161	268	147	268	144	328	156
GAATTATTACGTTGAT	alt_850_upstream	23	23	20	22	22	20	26	18	33	10
GTCATGAAGCTATTTG	alt_850_upstream	3	2	7	5	2	4	10	7	3	8
ATGCGCACGTTGGACC	alt_850_upstream	15	20	14	17	23	18	23	10	26	8
CGTAGGAAGTTGTGAT	alt_850_upstream	30	58	34	27	53	34	50	23	57	37
TTCCGCCGGCCACGAG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCCTGTTGGCTAA	alt_850_upstream	5	16	5	10	14	5	20	10	18	4
TGCTCGGTCAGGTCCA	alt_850_upstream	4	3	3	6	7	4	5	3	2	1
AACAAGCACTACTCGT	alt_850_upstream	28	53	29	27	43	30	56	22	51	29
AGTGCCACTTAGTGTG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTTCATCCAAATA	alt_850_upstream	37	44	26	25	49	24	47	20	50	28
TGCTATGATCCTAATC	ref_850_upstream	287	386	307	278	430	247	413	238	496	252
ACATTCTAGTTTCCGT	alt_850_upstream	10	23	17	15	30	18	26	18	18	15
GGACAATGGAGTTGTG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
AGACCGCCCAGGTTTA	alt_850_upstream	1	4	1	5	2	6	1	3	4	3
GTGCGCGTGACCCAGT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TGACCCCTCTCCGTAA	alt_850_upstream	53	79	34	43	75	40	69	26	58	39
AAAGATCATTCTTTCA	alt_850_upstream	44	95	67	50	83	42	82	42	104	53
AACTGCTAGATATTTA	alt_850_upstream	11	23	10	16	19	16	27	9	24	12
CCTCCGGTCATTGTGA	alt_850_upstream	4	17	9	9	17	12	12	10	27	8
TACAGGCACCCTGCGA	alt_850_upstream	9	17	12	6	21	7	12	7	22	10
GGGTGGTGGTCCCCTG	alt_850_upstream	78	147	100	96	149	75	155	79	159	72
TCGTCACATGTTAAAT	alt_850_upstream	25	41	20	18	41	21	26	15	37	17
CTTCATCACTGTTATG	alt_850_upstream	2	0	3	0	1	3	5	3	0	1
GTTTTTCTGCTCAGTT	alt_850_upstream	12	26	25	22	47	19	53	14	42	19
CATCTCCTTTTACATT	alt_850_upstream	17	32	19	16	27	12	23	18	34	12
CAGGTTCGATCGTTGT	alt_850_upstream	25	102	30	40	100	39	104	34	109	31
GACTATGTTGTGCTTG	alt_850_upstream	9	28	14	10	22	11	18	9	42	8
TTTAATTTGTCTAAAC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTCGTTACACCGT	alt_850_upstream	75	202	112	87	167	59	209	67	201	44
CCGCGTGTTCTGAGGC	alt_850_upstream	16	36	8	8	38	8	59	7	54	9
GACTTTGTGGCCCGGC	alt_850_upstream	17	41	39	24	38	25	37	28	48	29
AGGTAAGTAGTTACGC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTGAGTCATACTT	alt_850_upstream	41	105	56	45	118	43	99	44	108	49
GTCTAATGTTCTTGTC	alt_850_upstream	40	67	33	35	65	35	72	31	86	41
CTGCTGATGTATAGGC	alt_850_upstream	33	41	35	21	40	29	25	23	44	23
TTCGTCAGACTGATTT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTAACGATCTGCTCCT	alt_850_upstream	66	98	78	79	121	49	109	68	113	44
TGGTATAAAGATGTTG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TAGTAACGGACTTAAA	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
CATCACATTTTCGTTA	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
ACATTGGACTGCTCCA	alt_850_upstream	36	71	43	44	67	27	54	31	56	33
TAGAATAGATCGACTC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGTCATTAACCAT	alt_850_upstream	9	34	9	14	30	10	42	13	43	7
TCGCACGAATCTCTGG	alt_850_upstream	18	29	15	14	27	15	30	8	49	15
GGTGCACCAAGTAGCA	alt_850_upstream	5	15	11	4	11	9	8	12	20	6
ATCCTATGTTTACCTT	alt_850_upstream	14	32	25	16	26	12	23	10	31	16
TAAACCGTAGACTTGT	alt_850_upstream	33	59	35	34	68	33	63	44	65	32
TATTTCCCATATTATC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCCTTATCCGACG	alt_850_upstream	18	29	17	9	44	8	45	12	33	11
CGACCTACAAGATATA	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGGGATGCCCGGC	alt_850_upstream	16	34	25	16	35	17	43	14	32	19
GTACGCTGCAATGCAG	alt_850_upstream	32	58	29	23	61	22	55	23	63	17
GTGGCCGGTGAGCACA	alt_850_upstream	24	26	23	19	35	19	32	15	40	20
CTGGGTCTACGCTCTT	alt_850_upstream	80	151	111	71	163	74	171	61	179	66
GCACGATTTTCTCTCG	alt_850_upstream	10	22	13	9	25	12	30	7	28	5
TTTGCGCTTCGACGCA	alt_850_upstream	56	82	69	62	103	50	107	44	98	43
GAATTTGCCCTTATGG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTGATGTATAAGTTGC	alt_850_upstream	89	182	96	76	165	83	166	74	167	81
TTCTGCCCTTCGTCTT	alt_850_upstream	18	79	20	15	76	17	85	19	86	21
TCCATAGCAGAGTGTT	alt_850_upstream	17	61	29	23	71	19	69	19	65	21
CTTTCTTTCATAATGT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGGGCATTTCCGG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGCCGGACACGAG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGATAGGTCTCC	alt_850_upstream	9	14	12	6	14	4	11	7	11	12
TTGGGACTTCGACTGA	alt_850_upstream	9	28	15	24	26	17	28	14	38	15
GACCCGAGCAGACTCA	alt_850_upstream	59	92	49	57	80	40	89	51	73	37
CATGCACTGTGAGCTC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
AATGAAGAGACATACA	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCAATATTTCATG	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTAATGGCTGCCG	alt_850_upstream	80	91	86	60	83	64	80	69	77	69
TAGCGCATCTTTAAAA	alt_850_upstream	11	32	22	13	32	11	37	10	37	16
GATTCCGGCCACGAGG	alt_850_upstream	17	33	24	14	44	19	34	29	43	14
TAGCACTCTTTTCTCG	alt_850_upstream	2	14	12	7	21	12	25	8	21	6
TTGTATGGGGTACGCC	alt_850_upstream	19	49	25	22	38	22	29	20	42	10
TTGAACTGTGTGACGT	alt_850_upstream	58	133	55	52	148	46	125	62	107	62
ATTTCAGTGCGTCAAG	alt_850_upstream	28	43	28	39	61	34	53	31	62	32
TGTGTGTGGTGTCACC	alt_850_upstream	9	30	30	8	36	15	34	15	31	16
ATCCCGTTCTGATTCC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCGTCAAGTTCGT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
AACAGTACGGGTCTAG	alt_850_upstream	7	31	12	9	25	8	22	6	15	9
GAACTGACATCGTTGT	alt_850_upstream	14	33	16	10	25	17	26	11	24	20
GCCGTAAAGCGTCTTT	alt_850_upstream	29	45	32	20	57	23	64	26	80	17
GCTATCAGTCGGTGAC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTTTACGCGAACCTAA	alt_850_upstream	46	89	53	52	97	47	110	42	102	51
TCAGTTTGCGCGTCTA	alt_850_upstream	17	47	23	23	36	15	46	16	35	14
GCCGAGAGGTTAATCG	alt_850_upstream	33	80	51	35	65	51	73	37	96	51
TTCGAGCCGTGGAGAT	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTAATCGCCATTGAGT	alt_850_upstream	25	47	23	28	45	30	49	29	62	25
GAGCATTTGTTGGCTG	alt_850_upstream	25	65	36	41	65	28	60	26	73	22
CTGGGTTGTCCGTTTT	alt_850_upstream	1	3	2	4	4	5	5	3	6	1
AGATCAATAGAGGATA	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTCTGAGGCGCAC	alt_850_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTCCGCGCCGCGT	alt_850_upstream	5	9	4	8	17	8	15	4	8	7
AGTCCCGAAGCTTGAC	alt_850_upstream	53	110	66	55	124	52	120	65	165	64
CGTCCACAGCGCCCTA	alt_850_upstream	56	107	58	53	139	51	127	51	113	30
CCTCAAATTAAACGAC	alt_850_upstream	39	61	37	37	69	28	68	51	63	28
CCACTAACGGATCGCC	alt_850_upstream	9	6	6	2	3	3	8	3	12	2
AGTATATCCCTAAATA	alt_850_upstream	36	51	31	28	73	27	65	20	66	28
GTCCAGTTATCGCGCG	alt_850_upstream	15	24	19	10	33	18	30	16	26	18
CCATGGAGTTTACACT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
GGAATGCTAGCAGCAC	ref_6025_new	46	77	61	59	57	49	74	38	82	38
CTGCCCTCTCTATCTT	ref_6025_new	48	48	58	46	57	37	66	42	73	23
TATGTCTAGAAGCTCT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
CTTATGACGGCACCTG	ref_6025_new	204	286	263	206	280	217	313	200	331	197
CCCGCCTCGTCTATCC	ref_6025_new	35	64	53	44	59	45	69	47	69	27
TTAATTGGTGTGTGAT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
CATTGCCCAAGCTTTT	ref_6025_new	2	5	2	0	3	0	4	2	1	0
GACCAATTAAAACTGG	ref_6025_new	31	26	31	23	37	32	36	24	39	19
AGTGTCTTAGTATATC	ref_6025_new	0	0	0	0	0	0	0	0	0	0
GAGTCCTCCAGGGTCG	ref_6025_new	24	43	37	21	15	19	29	21	39	19
CCCCTTGAGTTACACT	ref_6025_new	78	88	73	81	96	68	93	59	90	51
TTTATTAATTCGGTCG	ref_6025_new	1	5	3	0	3	1	4	2	3	4
GGGGTCCCCATCCTAA	ref_6025_new	30	28	26	19	31	22	21	19	37	20
CAATTTTGTCAGAGGT	ref_6025_new	14	35	32	28	32	29	40	21	41	20
AGTTTAATGGCATTCA	ref_6025_new	0	0	0	0	0	0	0	0	0	0
TTCGGCGCGCGCTTTG	ref_6025_new	26	21	29	19	36	28	26	28	32	18
ACTTTAAACTAACAAG	ref_6025_new	25	15	25	22	17	21	19	17	26	17
TTGTGACTTTATGTTG	ref_6025_new	5	14	3	6	14	3	17	2	11	9
ATGGTTAGGCCTATGC	ref_6025_new	10	6	16	11	18	6	14	11	10	12
GTAATGTTTTGGTTTG	ref_6025_new	19	24	39	37	22	23	34	23	39	22
TAATGGTATACATTGG	ref_6025_new	60	70	75	55	80	52	96	53	69	39
ATGCTTCACCATCATC	ref_6025_new	17	50	32	32	35	29	71	18	55	24
CCCGGTTATATATTCC	ref_6025_new	26	38	25	32	50	23	41	20	47	25
ATAGCTAGATTACGTG	ref_6025_new	37	55	42	41	52	38	57	40	54	28
CGCGAATGGGAAGTCG	ref_6025_new	0	0	0	0	0	0	0	0	0	0
AGGCATTTACGACATA	ref_6025_new	137	139	142	129	137	111	130	108	181	113
CAAGCCGCGTGCAAAC	ref_6025_new	5	15	13	17	13	18	22	7	19	12
TTCCGTAAATGTGTCG	ref_6025_new	0	0	0	0	0	0	0	0	0	0
GAGGAGGTTCAGGTTC	ref_6025_new	42	33	42	20	43	29	30	24	27	23
AAGTTCGGCGTTTGCT	ref_6025_new	7	27	14	20	30	24	19	17	22	16
CTTTTCATATGGCCAC	ref_6025_new	22	25	16	20	30	21	26	20	30	23
CAGTAGGTTCCATCGT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
TGTTTAGAGGAATGCC	ref_6025_new	35	45	41	47	44	41	82	44	68	43
CTTTACCGTCGACTCT	ref_6025_new	48	101	66	50	94	58	108	38	112	48
AGCCGGAGTGCTTGCA	ref_6025_new	6	20	6	6	24	9	19	8	25	12
TGGCAAGTTGATCTGC	ref_6025_new	13	22	28	13	16	20	22	18	20	21
GTTTCGACGCAGGCGT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
CGCGATGCTTCACCTT	ref_6025_new	2	5	1	0	2	0	4	4	0	2
TTTCCGAAGATCGCGA	ref_6025_new	0	0	0	0	0	0	0	0	0	0
TGGTTCTGTCTTGACG	ref_6025_new	7	9	8	7	12	3	11	5	8	7
GTGCGATATTTATCGA	ref_6025_new	47	89	52	51	86	54	77	57	79	59
TGCGAGGGCAGCCCTA	ref_6025_new	70	104	103	99	114	93	144	81	124	87
CCATGTCTGCCCAAGT	ref_6025_new	28	34	40	32	47	30	45	23	55	31
GGGTAATGTGTAGGGT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
AATCATTACCTCTTTT	ref_6025_new	0	0	1	1	0	0	0	0	1	1
TAAAAATCCAGGGGAG	ref_6025_new	5	3	1	2	4	3	4	1	6	0
ACGCCTCCGGTTGCAG	ref_6025_new	50	68	52	53	68	56	83	51	93	45
ACTTGTTGCTTCATAC	ref_6025_new	17	28	20	20	22	13	26	16	23	13
CAACGGCCGTGCTGAG	ref_6025_new	18	17	12	12	19	26	27	21	30	22
CCACATCTAAAAACCC	ref_6025_new	55	123	113	89	148	75	129	57	129	86
GCATGTGGTCAGTTAA	ref_6025_new	0	0	0	0	0	0	0	0	0	0
GACCCATTGCCAGTTT	ref_6025_new	17	33	18	19	13	20	30	31	18	14
CGCTGCTTAGTACCTA	ref_6025_new	86	153	119	84	139	87	117	83	167	78
TTCGAGGTTGTAAAAC	ref_6025_new	142	165	185	154	215	142	156	133	205	137
TCACGCGGACTTTAGC	ref_6025_new	24	61	45	30	38	30	51	25	40	32
GCGATCTCGACATCGC	ref_6025_new	2	1	3	4	1	3	1	4	8	0
CTTCGTACCATATCAA	ref_6025_new	55	77	58	67	77	56	92	57	82	73
GTGGGCTTGATTTTTG	ref_6025_new	7	20	13	13	8	16	18	7	19	8
GTACGTGCACTCTGAA	ref_6025_new	18	24	17	8	20	17	27	20	27	15
GTTCACTTATTACATG	ref_6025_new	5	7	8	8	8	7	11	9	11	7
TATTGCATCATTTATA	ref_6025_new	61	49	68	64	61	56	52	47	74	55
TATATCGGGTTGCAAT	ref_6025_new	12	4	8	2	5	3	6	4	10	4
CCGGAAATACAGACCG	ref_6025_new	86	124	142	94	117	85	142	83	140	81
AGGTATACATCAGAGG	ref_6025_new	22	26	27	27	27	15	36	15	32	28
AGCTATTGTGGGCTAT	ref_6025_new	3	1	3	2	2	0	5	1	10	3
GCTTCTCCTCGCTTAG	ref_6025_new	60	93	42	39	87	37	73	31	80	35
AGCCATTGGACTTTGT	ref_6025_new	47	77	54	35	73	39	75	35	94	45
TGATCTACGATACTTC	ref_6025_new	0	0	0	0	0	0	0	0	0	0
TTTGCCTGTCTCTAGT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
TGTTATCGGATAACTA	ref_6025_new	41	67	60	31	44	33	73	30	60	36
GCATTGTCGCTAATTC	ref_6025_new	35	44	38	34	59	33	31	20	53	32
ATAGTTCTGCTCGACT	ref_6025_new	8	14	10	6	16	6	14	6	8	7
TACTGTACATCTACGA	ref_6025_new	79	99	77	72	88	80	93	58	84	59
GGGTCTGGCCTTATAT	ref_6025_new	16	11	8	10	14	15	15	10	11	10
TTAGAAGTAACGCCCA	ref_6025_new	12	16	7	12	15	9	12	12	24	6
TAATGGGGCTATAGCT	ref_6025_new	17	29	30	33	33	46	24	32	38	27
ATATTATATGGCATTC	ref_6025_new	43	67	75	43	54	48	66	40	43	47
CGGTGTCAAGCCTGAG	ref_6025_new	49	56	42	39	44	27	57	29	49	26
GGGATCGGGCTCTGTC	ref_6025_new	11	7	5	2	7	5	12	2	11	5
CGATCACAAGTTAAGC	ref_6025_new	29	38	40	30	46	27	40	30	36	24
AGTTATCCTCCCTTTC	ref_6025_new	8	12	9	3	12	7	6	10	8	4
TCCGTGCTCGCGATGT	ref_6025_new	31	41	48	46	38	37	56	31	42	35
CCAGATGTCATTTCTT	ref_6025_new	21	44	15	16	27	18	35	21	51	10
TGAAGTGACCATACCC	ref_6025_new	0	0	0	0	0	0	0	0	0	0
GTGCATCACGGTCGTC	ref_6025_new	41	71	56	79	70	45	77	57	75	57
TTCTGGCTACAGATTG	ref_6025_new	5	4	14	14	9	6	17	6	15	12
CATTATGCTTATGTGC	ref_6025_new	45	60	45	48	58	36	40	39	61	28
TGGCGACATGGGTGGG	ref_6025_new	0	0	0	0	0	0	0	0	0	0
AATCTCCCAAGAGCGT	ref_6025_new	63	56	55	37	76	70	72	48	78	59
CTGGATTCGTGATCGA	ref_6025_new	37	46	25	27	57	30	50	29	52	24
GTAGCACGTTTATCCT	ref_6025_new	0	0	0	0	0	0	0	0	0	0
GGACCTACGCGCCCCT	ref_6025_new	74	85	99	79	85	89	77	61	99	69
CTCGGTCTTTTCATGT	ref_6025_new	6	24	6	3	27	2	22	3	24	5
CTATATACCCTTCACG	ref_4372_RC	13	20	19	12	26	8	26	12	27	9
ACGCCCCCATGACGAT	ref_4372_RC	26	33	36	14	40	26	50	26	37	23
AATCTCGCTTAACCCT	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TCTTGGACGGTGCTGG	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
CGATGTGTCATCGCTC	ref_4372_RC	54	99	76	54	123	61	111	46	102	55
AGCACATCGTGACGTA	ref_4372_RC	5	10	6	2	13	2	21	9	5	4
GCTAGATCTTTACGTA	ref_4372_RC	10	22	11	12	18	6	22	9	24	10
GATGTTAACCGATCCC	ref_4372_RC	1	3	12	0	5	1	6	2	12	6
CGTGCTTTGTAGCCTA	ref_4372_RC	3	4	2	4	9	3	7	4	5	3
TCCAACGGGGCAAGCA	ref_4372_RC	163	275	199	158	300	166	275	163	304	159
CTGTCACAGTCCGGTA	ref_4372_RC	5	4	0	4	4	2	6	3	5	1
CGGATCATATGGCACG	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
AAGTTAAAATTTCAAG	ref_4372_RC	55	116	63	49	122	48	113	47	121	51
CGTTTGGTCACGGCTC	ref_4372_RC	124	201	142	144	249	125	236	136	195	124
ACGATTTGATCGTTGT	ref_4372_RC	58	77	47	39	76	37	89	54	94	41
GCATTAGGTGGTTAGC	ref_4372_RC	1	6	2	11	6	4	10	4	5	2
CAATCATCGGACCCTT	ref_4372_RC	45	90	54	49	71	42	59	39	77	40
CGTCTTGTATAAAGGC	ref_4372_RC	44	57	36	49	66	43	73	36	58	30
TCTTTAATAGTGCGTT	ref_4372_RC	67	185	82	82	189	73	188	87	191	57
CATAGGTTAGTACCTA	ref_4372_RC	24	34	17	24	24	16	35	10	34	10
GGCTCCGTTGCTGTAG	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
GTACGAGTTGAACTAC	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
CACAATAAAAGATTAT	ref_4372_RC	47	101	67	52	99	60	106	45	97	48
TAAGTTCAGATATGGG	ref_4372_RC	68	130	92	67	132	51	149	60	172	67
AATTTTGCTTTTTGTA	ref_4372_RC	20	20	16	14	24	10	33	11	35	12
TGGGCCTATGTAGTAG	ref_4372_RC	32	43	20	25	54	25	56	15	57	18
GTTCAGGTGTGCTATG	ref_4372_RC	18	56	18	21	63	12	51	14	44	10
CGCAACCAGTTAACTG	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
CCTAGCCGTTGTTTCG	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TTCCAAAGTAATCATT	ref_4372_RC	37	95	54	36	74	42	83	41	83	29
ACCTATTCATCCATTT	ref_4372_RC	16	14	6	6	13	5	19	5	21	5
TACATGGACCCTCGTG	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
GTGTTATCCTAGACAC	ref_4372_RC	0	1	1	1	2	1	2	2	2	1
AACTGAGCATAAACGA	ref_4372_RC	3	8	6	6	10	4	14	8	10	4
CACGATATCCCCGGTA	ref_4372_RC	25	102	42	23	126	35	96	31	118	24
CTAGGGTGTTAGGTTG	ref_4372_RC	32	70	28	19	58	39	52	33	53	13
CGCCGCCCAACCTTTC	ref_4372_RC	93	163	126	127	169	116	183	115	180	99
CTTTGCCGAACCCTGT	ref_4372_RC	20	42	22	19	62	21	42	30	51	12
ACCCCTAATGTCACAG	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TCTTCCTTTATCTTAG	ref_4372_RC	10	16	4	13	7	4	13	3	10	4
GTGTGCAGTCTGTTTC	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
CTTGCATACTTGTCTT	ref_4372_RC	132	299	176	132	325	121	295	124	359	103
GATAAACTTATTTTGG	ref_4372_RC	19	27	10	15	25	15	33	9	35	14
AGGGAGTTGTGAATGG	ref_4372_RC	19	35	24	19	30	18	38	32	27	21
TGGACTGACTTGGTCC	ref_4372_RC	6	12	5	4	5	4	17	2	11	3
AATTTTGGTCCCGCTT	ref_4372_RC	26	57	34	27	61	27	51	25	65	33
ATTCTCCTTCGTTGCG	ref_4372_RC	9	9	10	9	9	6	12	5	15	6
GCGCTTTCTGCATATA	ref_4372_RC	35	53	32	33	39	34	48	19	55	30
ACTGAGATTTGTGCCT	ref_4372_RC	11	16	15	15	16	18	18	8	20	12
TTATGATTCACTCGTC	ref_4372_RC	28	57	46	34	69	32	67	38	60	28
CAAAAAGACAGCAGTA	ref_4372_RC	0	0	1	0	4	1	1	2	2	2
CGTGCCATACCACTAA	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
GAATCCTGGTGCCAGA	ref_4372_RC	47	82	56	51	74	45	73	34	104	41
CTTGCCACACTCTATT	ref_4372_RC	2	10	2	1	9	0	5	2	12	1
TCATATCCTGGCCTCT	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TGCGCCTGGTGAGTAC	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
GTCGTCCAAAATATCC	ref_4372_RC	8	31	11	7	28	11	28	15	19	5
ACCAGCAAACGTTCCA	ref_4372_RC	0	13	4	2	13	7	15	5	15	3
TAGAACCGTCTAGTTA	ref_4372_RC	6	6	3	1	3	2	7	3	7	3
GCCCACACTCTCTGGG	ref_4372_RC	38	64	32	36	50	33	53	16	54	40
ACTATCGTTCATATAC	ref_4372_RC	11	22	7	9	18	11	27	14	25	10
CCCGCGGCATAAACCC	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TGTGGGGCTCTTGCTT	ref_4372_RC	17	10	13	9	9	11	15	9	5	10
GTTTATTGACAGACCG	ref_4372_RC	63	92	64	57	87	58	102	49	119	53
TTGGATCCGTTGCCTT	ref_4372_RC	47	74	37	41	90	28	88	42	88	31
GTGAACCCTTCTTGTG	ref_4372_RC	20	20	27	8	48	30	32	23	40	14
TGAGGATAGCTTTAAT	ref_4372_RC	104	191	123	105	187	127	237	124	222	100
GGGTCCGGCTGCTCTT	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
ATGTATTTCTTCGGCC	ref_4372_RC	11	31	18	9	23	15	39	14	22	13
CCTGTAATTTGCGGAG	ref_4372_RC	2	10	4	3	15	3	16	4	19	3
TTCGCGGGAATGAGAC	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TCATGCCCCTCAATTC	ref_4372_RC	17	16	16	14	15	8	14	9	17	13
TATGCAAGATCGGGTG	ref_4372_RC	20	43	18	12	45	14	30	17	50	20
TTATTTGGAATATGTT	ref_4372_RC	4	3	5	7	8	10	10	2	12	4
AATCTCTCAGACATAC	ref_4372_RC	26	84	43	47	95	43	78	45	74	32
TTGAGCGCATGGTTCG	ref_4372_RC	33	91	61	38	73	40	73	31	69	36
TGACTGCGGCACTTTT	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
CACCGACGTTCTCCTT	ref_4372_RC	3	20	3	3	14	2	19	7	14	3
GGTTCAGTTTTATACG	ref_4372_RC	7	7	2	2	4	5	5	2	8	0
CGATGCGTATTTATGA	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TTGCGCAAATGGAATA	ref_4372_RC	20	28	15	18	28	22	34	17	45	17
GAATACGTTTAATGTG	ref_4372_RC	1	8	6	5	3	6	13	7	8	5
TCAAAATGTCATTAGT	ref_4372_RC	4	5	9	6	10	3	8	0	2	3
GAGCGCGTACAGTTAT	ref_4372_RC	35	62	39	35	56	38	60	23	77	36
GGTGATGGTCTGTTTA	ref_4372_RC	24	51	20	25	36	20	37	21	54	25
GAAGGTCAATTGATTA	ref_4372_RC	9	16	5	11	9	1	14	4	9	5
AATGGTCGTCGATATC	ref_4372_RC	33	35	31	22	44	26	32	21	53	24
TAAATAGGCCGTTACT	ref_4372_RC	53	77	68	48	83	31	73	41	95	39
GGACACTACGGCACTG	ref_4372_RC	50	80	64	46	80	54	88	42	88	47
TATCGACGTCCTGTAA	ref_4372_RC	12	12	13	6	8	6	13	3	18	6
CACCCAGACTCCCTTA	ref_4372_RC	9	20	6	11	9	13	11	3	16	8
CGCTTTACTCAACCAT	ref_4372_RC	19	61	18	25	72	21	70	21	73	11
CTGTTGTTTCCACTAT	ref_4372_RC	10	17	17	10	11	6	14	11	15	13
TTAATGCACGCGGCTC	ref_4372_RC	0	0	0	0	0	0	0	0	0	0
TTTTAGTCGGCCAATC	ref_4372_RC	12	27	18	17	19	9	30	14	36	16
GCCCTATTAAGATTGG	ref_4372_RC	23	35	23	26	64	23	43	22	50	25
AAAACGTTAGGGATCT	ref_4372_RC	29	40	27	17	42	27	44	21	39	15
TGTGCGAGTCAGTAGC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GCAGGTTCGCGCACAG	alt_5641_new	56	63	66	67	74	48	75	45	84	43
GGCTGATATCCAGGAA	alt_5641_new	6	11	17	8	13	8	10	6	15	15
CGATTTAGGCAATCTA	alt_5641_new	7	16	5	5	16	4	3	8	15	10
GAACGTCTTAGGTGTA	alt_5641_new	3	5	7	5	6	2	11	7	5	3
CTATCTTGGAGGGGCT	alt_5641_new	27	55	39	25	50	25	62	38	49	34
GGACTGTCGAGTCTGG	alt_5641_new	71	62	64	46	79	49	76	50	94	30
TACTGCCCTTACCAGC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CGCCTGATAGCGTACC	alt_5641_new	13	19	33	18	29	16	22	17	30	17
GGCCTAAGAGCTTTTG	alt_5641_new	20	32	31	19	20	19	16	22	36	19
GGTGGCCCGATCAGTA	alt_5641_new	4	7	5	2	4	5	8	5	6	4
ATGGCGGTCGTCTGCT	alt_5641_new	171	207	235	162	223	197	233	152	237	173
ATTCATACAGCCGACA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CAGTCATACCGGATGA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CAATCAACCGTAGGTA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TTTGGTCCATTGGTTC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TGGTGTCGGACCTGCG	alt_5641_new	116	176	125	118	171	113	160	110	132	115
ATCGGGCTGCGCTCTT	alt_5641_new	16	19	8	15	18	6	24	12	18	14
TGCCCAGTTGACAGTT	alt_5641_new	43	56	26	35	48	33	57	29	58	40
ATTTCGACTTGGCCCA	alt_5641_new	25	41	38	26	34	24	42	22	35	19
CTTCATAGTTAGCCTT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CTTACTCTTTTAGATT	alt_5641_new	9	37	20	12	25	14	37	11	29	15
TGTTAGTTACGCGCAT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
ACCGTCTTATACGATT	alt_5641_new	21	35	28	28	39	20	39	38	35	22
TTCATGTCTGTACGCT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CCCCAGAGCTGTAGCG	alt_5641_new	8	12	5	8	13	8	7	13	12	6
ATGACGCAGTTCGATC	alt_5641_new	7	11	8	6	11	10	15	12	14	6
TTGCCGTGTCATGCTA	alt_5641_new	3	10	3	2	5	10	6	6	9	7
TATGTCGGGTTACGGT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GCCTTGGGTACTAGGC	alt_5641_new	47	92	60	48	89	49	87	51	79	46
TTTGGACCCATGTTCT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GTCTATCGTTGATCCT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CTCACGATCGAACTCC	alt_5641_new	3	6	0	0	8	5	2	3	1	2
GCTTCTTTTCATTTCT	alt_5641_new	5	10	5	6	10	1	6	1	19	4
TAACCTTGGCGATATC	alt_5641_new	28	37	46	35	50	28	45	29	54	24
TTCCTCAGATTACTAC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TCTTGGGTCACTGTTC	alt_5641_new	3	10	13	8	5	4	3	5	15	3
TTTGTAAACCGCCGGA	alt_5641_new	14	21	17	15	13	8	18	11	32	8
TCCAGCATCTTTAGTT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TTGAATTGCCGACTCT	alt_5641_new	31	51	35	24	62	28	53	27	53	18
CGCCCCTGTAGAAGGC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TGACTTAGATATTATC	alt_5641_new	5	14	5	4	15	3	7	8	13	4
TAAAGATGCCCCCTAT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TTCGTCCTGTGTTGGC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
ATCGCTTCACCATGCA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TGGTTCACGCAGGCAA	alt_5641_new	31	38	44	28	42	33	53	33	38	29
CTAAGTCCGATCCGGC	alt_5641_new	21	10	20	16	30	12	20	11	19	17
GGATCGCAAATCGTAC	alt_5641_new	64	86	65	61	80	63	99	62	104	60
CTCTAACAGTTGGGCT	alt_5641_new	9	18	6	16	18	3	17	7	11	8
ATACGTATCAGCCTGT	alt_5641_new	3	7	4	5	6	4	16	2	6	3
GTCTACTGACAGTCCT	alt_5641_new	6	9	6	5	14	6	8	1	11	7
AAAGTGGTAATTTCTG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
ACGCTGTTAGTGTGAG	alt_5641_new	16	16	21	12	27	9	31	20	27	7
GGTCTGTTTCCTCTTG	alt_5641_new	21	17	30	29	22	24	26	17	26	13
GGTTTTCGTGGCATTC	alt_5641_new	29	69	35	45	93	51	64	48	63	34
GGGTAACGGCTTACCA	alt_5641_new	4	7	1	3	5	1	5	4	8	1
TTTCCCGTAATCCTTG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CTGTAGGGTTAAGATC	alt_5641_new	3	3	2	0	8	1	3	1	3	3
CGCGCAGTTACGGTCG	alt_5641_new	66	100	65	67	105	49	116	64	126	32
ACTTAGCGTTTGTAAG	alt_5641_new	28	43	23	28	38	14	49	19	48	23
CAAGTTAGCCCATAAG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TAGGTCTCCCAATTGC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GCCAATTTGTGCTTAG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
AGGTCATCCGCGCTTT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CAGTGTCGCCTACACC	alt_5641_new	7	13	11	5	9	4	11	5	18	10
AAGGCCTCTAACCTTA	alt_5641_new	15	81	31	18	72	17	91	13	85	17
AAATGATTATGCTTTC	alt_5641_new	28	35	21	25	35	25	32	31	32	30
AGTCATAGATCTGTAT	alt_5641_new	7	12	10	6	10	3	15	5	11	8
ACTGAGTGCCTTATGG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
ATTTGTGCGTGAATCA	alt_5641_new	10	7	17	8	14	10	21	6	16	5
TGACTTGTATCCCCTG	alt_5641_new	2	6	5	4	5	2	6	2	4	3
GCACGTAGGATTCTAT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TCGTCTGGTTTTGTAG	alt_5641_new	4	2	1	3	0	4	0	2	4	2
ACGTATTACGCCGGTT	alt_5641_new	53	74	50	61	74	40	88	53	77	37
GGGCTAACACGGCTCT	alt_5641_new	8	15	9	10	10	9	13	4	10	5
TCACATTCTTATAATT	alt_5641_new	9	21	8	6	12	6	10	17	17	6
GGATGGTTGGAATGTC	alt_5641_new	56	115	94	87	91	71	121	59	105	63
ATCGTAAGGAACTCCG	alt_5641_new	54	137	92	61	143	81	113	71	157	68
TTTAATCAGGTTTACC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
ATAGGAGATGAAGGAT	alt_5641_new	53	49	83	75	71	41	67	46	68	47
CCGGGGGATAACATTA	alt_5641_new	35	29	29	26	47	27	45	19	44	30
GTGCTCTGATCCGGGC	alt_5641_new	17	14	16	15	11	11	24	5	33	17
ATCACCTCGCTGTTCC	alt_5641_new	5	32	15	9	25	4	32	7	31	6
CAGCATTATTTATGAT	alt_5641_new	20	22	19	13	26	19	26	17	32	12
GGGAATTTAACAATTA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CAACTGTAGCATTTTT	alt_5641_new	17	46	24	26	38	19	37	18	40	20
TTCCCAGTAACTAAGG	alt_5641_new	52	76	52	42	84	52	90	39	89	41
CCCCTAACTTATGGCC	alt_5641_new	17	32	17	14	46	25	49	23	40	21
TATTGCTTATGCCTCT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CAACATGAGCCACCGT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TGCCGCTTCAGTTAGT	alt_5641_new	149	396	167	205	359	165	416	174	415	147
ATCGAAGTATTTCTGG	alt_5641_new	25	32	22	21	55	29	46	22	41	37
CTGAACTTCTCTCGTT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
AGCTCTATGTTATGAA	alt_5641_new	13	24	12	7	19	7	9	9	24	11
GGTAATGTGTCTATCC	alt_5641_new	2	6	3	2	4	3	7	1	3	2
GTTTCTTTCTGTTGAG	alt_5641_new	62	75	68	40	68	43	95	51	91	41
GTCGCCGGGCCGGATG	alt_5641_new	28	121	37	28	110	36	127	27	138	22
AGGGATCTTGGACTAG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CAATCTCGGTTGTTGT	alt_5641_new	30	61	33	25	50	24	29	31	48	34
GCCGTCTGTATAGGGC	alt_5641_new	9	29	18	14	25	12	21	12	27	12
GGACCACATAAGTTAA	alt_5641_new	79	133	115	74	153	70	156	67	138	60
TGAGAATGATTGTAAT	alt_5641_new	16	39	29	19	27	23	23	24	29	20
CATCCAAGCTGCTTGG	alt_5641_new	126	204	132	129	245	138	189	102	237	119
AGAGGCGTTAAAAGCG	alt_5641_new	26	33	38	32	45	27	38	27	47	24
AGCGTCGTGACCGACC	alt_5641_new	12	16	15	15	8	15	17	14	20	10
CCTTTCGGTTTTTAAA	alt_5641_new	27	37	26	35	47	27	33	21	39	22
CGACGGATCAGACCTC	alt_5641_new	37	37	31	39	30	31	44	25	41	24
GAGCACCCCCTGTTGG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GGGACTTATACTACAA	alt_5641_new	31	50	30	24	50	35	43	26	63	29
TCCCGCGGGGGTGCCA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CTCCCGTCCCATCCCG	alt_5641_new	8	34	26	11	33	5	41	11	32	7
ATTCAGTCCAGTTGTT	alt_5641_new	43	81	55	63	84	57	87	37	97	47
CAATCGACCGTAGGTA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
AAGACTGTGGTTGTGA	alt_5641_new	0	0	0	0	0	0	0	0	0	0
ACTTTTGCTCGACTCA	alt_5641_new	2	9	14	5	7	5	11	11	6	6
ATGACTGTGGTTGTGA	alt_5641_new	61	133	112	73	124	66	150	75	166	58
TTAGATAGGGCTTGAA	alt_5641_new	46	74	42	39	72	34	70	33	44	49
AAAACCCGGTGAACTG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TAAGGATGCCCCCTAT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GGTCAATCGCTGGACC	alt_5641_new	38	70	65	50	77	29	75	50	81	47
AAGGTTAGGGACGTGC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
ACGTGGCACCTGCGTT	alt_5641_new	5	20	6	3	17	4	23	7	12	6
ATCTTTCCGTTGTCGA	alt_5641_new	6	12	20	14	18	13	16	7	14	10
TGTAGCAGACCGAAGG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CGGTCGCGCCAGATCC	alt_5641_new	5	9	10	6	15	3	10	2	12	6
CGGGACATTACGACAT	alt_5641_new	19	23	27	29	32	14	22	12	32	23
CGTGCCTTAGGCTTCA	alt_5641_new	22	55	24	23	51	21	55	25	48	22
TTAACATTGCTAGAGC	alt_5641_new	50	99	62	65	101	53	98	59	117	43
TGCGGCCCGTCCTATC	alt_5641_new	3	15	11	13	14	5	8	8	17	7
TTTATTTTTCGGGGCC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
AGCATCTACTTGTATC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GTACTCTTATATCTCT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TCACCCAAGTATTCGG	alt_5641_new	7	13	14	11	19	14	12	16	9	7
TACGTCATCACTTCCA	alt_5641_new	38	42	42	28	40	31	42	23	51	40
TATCTCTGAACTTGAT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
CTCGAAGTAGTGCATG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TGTAATAATACTTCTC	alt_5641_new	18	24	22	26	33	18	29	12	38	16
ATGCTAGCGTTATATT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GTAACGGTGCCAAATT	alt_5641_new	57	48	51	50	78	30	49	50	64	37
CCTCGTGATAGCCACA	alt_5641_new	13	25	13	10	18	11	13	11	15	9
GGGATTCTCGCACGAG	alt_5641_new	57	57	69	56	62	54	83	56	64	40
AAAAGGGGGAGATTGG	alt_5641_new	23	30	32	19	43	16	43	16	35	27
TGTGCCTTCGCGCCTG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GCTTCAGGTGGTTTTG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GCGCCAAGTTGTTTGA	alt_5641_new	0	8	10	5	6	5	3	2	5	2
GCACGTTACGGTGCCC	alt_5641_new	33	34	39	24	56	39	41	25	51	18
TCTATATTCTACGGAT	alt_5641_new	32	63	56	43	52	46	46	25	76	23
GGGCGTTCCCAGGCCG	alt_5641_new	16	23	18	16	29	11	35	7	23	11
TGTGTGGTCGGTCTTT	alt_5641_new	7	28	9	12	20	12	28	11	26	17
ACTTCTTCTATTGCCA	alt_5641_new	24	43	33	29	48	33	43	20	42	18
ATCTATAAAAAGCCGG	alt_5641_new	11	19	25	6	14	10	23	9	21	8
TTCGTCAGGTTAGCGA	alt_5641_new	2	0	0	0	2	1	2	0	2	0
CTGAGAGTCGCTTAAT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GGGGTGGTGAGATTGC	alt_5641_new	30	25	26	21	38	22	39	24	39	17
TGGTTTGAAAATTGGC	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GCTCTTACTAGCGTAG	alt_5641_new	2	2	1	0	2	2	2	0	3	1
ATTAGTTTCTTACGGT	alt_5641_new	23	41	34	34	54	25	45	28	46	32
TCTACGGTGAGCCCTT	alt_5641_new	0	0	0	0	0	0	0	0	0	0
GATAACCTCATCATAT	alt_5641_new	27	33	35	32	41	24	48	29	53	24
GTGTCCGCATTGGGCG	alt_5641_new	0	0	0	0	0	0	0	0	0	0
TGAACTGACCTTCCGC	alt_3640_upstream	3	7	8	9	6	8	12	9	10	9
ACTCGCCCGCTGAAAT	alt_3640_upstream	39	45	49	34	40	47	50	46	41	40
TTTGCGTATCGTTTTC	alt_3640_upstream	37	25	37	44	35	37	24	28	28	20
AAAATAATTGTCATCA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGTCTCTGCGCGA	alt_3640_upstream	3	0	6	9	1	3	1	5	5	2
CCTCCGGAGCTCGTAA	alt_3640_upstream	11	15	19	18	11	15	12	19	19	16
TCTCTTACAACGGTAA	alt_3640_upstream	17	23	27	25	28	23	20	23	32	25
TTTTTCTATGGGCTGT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTATGAGAGCACA	alt_3640_upstream	21	15	26	14	21	16	23	25	16	20
CCATTGCTTTATATTC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTAACATCGATTG	alt_3640_upstream	30	18	30	21	17	19	30	21	23	18
ATCGGATCGGGGACCC	alt_3640_upstream	14	10	13	13	10	7	17	14	8	13
CTCTCACTACCATATA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGCTAGTAGCTCA	alt_3640_upstream	62	59	66	69	46	61	50	55	65	52
GCCCAGCCTCCTTCGA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTGCTTAAATGAG	alt_3640_upstream	70	73	71	75	75	63	69	55	99	45
TGTAGGTGGGGTGTAG	alt_3640_upstream	6	10	9	8	3	11	2	5	10	5
GGGATTGCATGCCAAA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
GTAACTCGGGAAGGTA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TGACTGCTACTTAGCA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCATGTAAGTTGG	alt_3640_upstream	19	18	21	32	27	32	18	23	28	17
AGACCCTTTCACCTAG	alt_3640_upstream	132	150	159	144	123	134	135	109	144	112
TTCCAGAAGGCTCGAC	alt_3640_upstream	37	36	41	36	23	26	23	30	30	31
ACACCTCTTTGGTACG	alt_3640_upstream	22	22	30	16	20	20	22	11	17	15
CCACTGAGGCTAATGG	alt_3640_upstream	23	16	26	16	23	13	26	19	27	18
ATGATCCTACATACAG	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
GATTCCGCAGTCTTGA	alt_3640_upstream	31	24	30	31	17	26	26	17	27	25
CCGACCTCAAGGATGC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
CCTAACCGCACGTTAT	alt_3640_upstream	4	16	7	17	11	14	14	16	21	13
GGTGTAACCAGGTATC	alt_3640_upstream	64	63	83	65	62	70	53	48	48	63
TCCCGGGGATAGTGCG	alt_3640_upstream	12	11	16	8	18	8	13	12	12	8
TACTTGAATGACGTCC	alt_3640_upstream	53	32	40	47	42	37	34	45	33	22
GACGTTCTTCATTCAG	alt_3640_upstream	30	29	29	28	33	28	27	23	38	20
AATGGAGTAATCGCTT	alt_3640_upstream	11	9	8	3	4	8	9	6	6	7
AATATAGTTGGCACTA	alt_3640_upstream	16	16	16	18	17	12	23	14	23	16
GTAGTCTCACATTGGT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTTTCTAGATCGC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGCTCCACGGCAT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TACGGCAATCTTAAAT	alt_3640_upstream	54	63	78	72	57	66	70	71	77	51
GCACCTCTGCCGTTAA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTAAGGTTGTGGG	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCCATGCCTAGAG	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
AGTAATGGTGGGAATG	alt_3640_upstream	58	81	104	78	61	70	63	62	71	76
GCTTAACACAGTTCAA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCTGTATCCGTCC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCTACGGCCCCGT	alt_3640_upstream	85	88	96	102	75	63	78	100	87	75
ATCAACCGGTTCTCAA	alt_3640_upstream	12	12	14	18	20	10	22	15	20	11
TCATTCAGACAGTCTA	alt_3640_upstream	26	24	30	32	12	26	22	24	32	23
TTTTTAGTTCCCACGG	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TCACAACAATAGAATA	alt_3640_upstream	41	33	61	49	40	47	38	39	49	41
CTCCCTGTGGGGTCCT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTCTTCCTGTATG	alt_3640_upstream	8	7	7	6	12	6	8	7	5	9
ATAGTCTTTCGACGTG	alt_3640_upstream	167	201	204	172	200	175	222	187	234	182
CCGCGTCCTATAGCAT	alt_3640_upstream	15	22	12	12	12	19	12	11	15	19
AGTTTAATAGTAAACG	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TAAACGACCTTGTACG	alt_3640_upstream	8	9	12	9	10	17	12	10	14	8
TTCTTTGGTTAAACTC	alt_3640_upstream	1	1	2	1	3	3	1	2	2	1
CCCGATATATAGTTTG	alt_3640_upstream	5	14	18	13	18	9	19	13	13	7
ATAGACCCGCCCGACG	alt_3640_upstream	5	14	7	9	7	11	14	6	8	8
ATTACTGTACTTTGGG	alt_3640_upstream	57	61	73	74	62	59	83	51	87	57
TCATGTTTCTCTTAGT	alt_3640_upstream	0	4	0	0	2	2	3	3	1	0
CAATTCTGAACTCTAT	alt_3640_upstream	23	16	21	27	13	24	21	21	19	23
TACCCGAGGTCGTGGT	alt_3640_upstream	12	25	13	13	27	17	28	10	30	7
CCATGGGCGTATTACA	alt_3640_upstream	4	2	5	7	8	4	9	5	7	2
TCATCCGCAGAGATCT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTATGAAAAAGCT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTTTTGTCGCGT	alt_3640_upstream	103	105	112	100	103	105	145	115	113	109
CGTCTCCTTGGCTTGT	alt_3640_upstream	46	42	56	42	33	37	53	47	35	38
CTGTAATTGGTGTCAT	alt_3640_upstream	19	18	41	32	25	30	23	26	38	25
CCTCGGGTTGAGCGCA	alt_3640_upstream	5	4	5	7	3	5	7	7	11	4
AAGCTGAATCACGCTT	alt_3640_upstream	30	15	36	27	24	13	15	17	22	30
TCCTTGCATTGCATTG	alt_3640_upstream	29	46	48	28	38	28	48	30	44	20
TTAGTGTTATGGGTAA	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACTTGCGCTGAG	alt_3640_upstream	9	25	25	33	31	17	24	19	16	14
TCGCATTACCGAACGT	alt_3640_upstream	50	31	48	43	35	32	30	36	39	33
CGTTATGATGACCGCC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAAGTCTCCTAGT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTCGTCGTGCTAC	alt_3640_upstream	19	13	13	16	11	13	25	13	17	12
GTTTGCAGCTAAGTAA	alt_3640_upstream	8	11	5	7	9	11	13	3	5	11
AGTCTCATGTGCGAAT	alt_3640_upstream	34	31	63	47	56	53	40	42	41	42
AGGGGCGCGCACGATT	alt_3640_upstream	39	33	40	28	31	27	31	30	44	24
CGAATCTTGGGAGGTT	alt_3640_upstream	54	61	57	50	45	43	46	49	51	34
TCAAATCGGTGGTTTC	alt_3640_upstream	17	9	15	14	7	7	6	12	12	12
TTACGCGGTATCTTGT	alt_3640_upstream	44	54	38	36	40	50	36	32	39	42
ATGTTATAAGGGGTTT	alt_3640_upstream	36	45	68	46	54	52	44	43	53	40
AAAGATTAGTGACACC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TGCCATTGTTAGGCGT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
TACCATGTCGGTATAG	alt_3640_upstream	24	38	42	42	33	26	34	29	44	31
AGTCTCCTCAGCGGAA	alt_3640_upstream	11	12	37	22	23	12	22	13	26	19
TCCTTGATCTAGAGTT	alt_3640_upstream	47	41	59	62	58	41	48	61	56	36
GCTACCTTAAATTACA	alt_3640_upstream	24	16	28	12	23	17	22	15	28	14
ATTTGGGTGTGCCACT	alt_3640_upstream	65	106	84	92	95	82	84	86	116	62
TTCTACAGGTATTCTC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
CCATGACGCAAACAGT	alt_3640_upstream	8	14	10	9	16	13	8	7	11	11
GGGAGCCAGAAACTCC	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
GCGGTATCGTGGCATA	alt_3640_upstream	46	45	54	45	56	29	45	40	52	28
TAAGCTCCTATCTAAT	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
GGATCACTGCAGGGTA	alt_3640_upstream	17	14	40	36	20	23	21	38	29	23
CAATGTCCGATTCGGT	alt_3640_upstream	49	64	69	67	66	53	63	60	64	63
AGTTGCCTCATTTTCC	alt_3640_upstream	38	26	33	32	25	19	41	31	28	22
CATCGGTGAGGACTTT	alt_3640_upstream	80	51	88	62	57	72	62	52	66	47
TCCGGCGGCAAATGCG	alt_3640_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTGTTACACACA	alt_3640_upstream	5	15	10	13	7	8	2	7	7	7
CATCTTCTTCTAGCGG	alt_3640_upstream	25	27	31	24	27	26	25	33	30	19
CTTGGCGTCCTAGAGT	alt_3640_upstream	1	1	0	0	1	1	1	1	4	1
TCGGTGACTCACTGAT	alt_3640_upstream	9	5	8	9	7	8	3	10	7	7
TCATTCTGTATACTGG	alt_3640_upstream	4	7	13	11	6	9	6	9	6	5
GAGAGCATGATGTGGT	alt_3640_upstream	33	38	36	33	28	28	43	31	38	24
GTTTGCGTCTTAGAGT	alt_3640_upstream	26	24	32	26	26	20	17	23	30	22
TGGTGAAACTGCTAAC	alt_3640_upstream	36	22	40	25	28	23	32	29	33	15
GATTAGTGCTTGATCA	alt_3640_upstream	42	39	44	45	43	55	49	38	37	38
TTTTCGGGGTGCTGTC	alt_3640_upstream	38	54	58	59	37	41	44	52	48	53
TCTCGTTACGTTTCTA	alt_3640_upstream	51	37	61	73	46	42	38	52	50	47
ACGTTATGCGGACTCT	alt_3640_upstream	28	25	34	24	22	22	19	27	17	20
CCAAAGCCAAAGCGGC	alt_3640_upstream	14	12	17	12	20	17	8	14	26	11
CTGGGCTTGCGAGCGT	ref_2597_missing	79	140	106	91	162	81	175	93	141	84
TCCTTTCAAGCGGCAG	ref_2597_missing	26	53	43	30	55	26	45	26	69	29
CCTTATTGTTCAGTGT	ref_2597_missing	57	79	56	29	103	48	102	44	105	32
CTCTATTACCTTGTCC	ref_2597_missing	5	8	2	2	6	2	3	3	4	1
TCTAATGGCTTCGGCC	ref_2597_missing	12	15	12	14	21	10	22	8	23	11
TTTTGTGAGATAGGAT	ref_2597_missing	53	100	55	37	80	47	73	38	92	30
AGCTCATATAGCCAGA	ref_2597_missing	15	23	13	20	23	8	22	19	20	11
CTATATCGATTCCCTC	ref_2597_missing	9	13	8	7	18	4	22	11	13	6
GCCATCGACTGCTCGC	ref_2597_missing	38	85	41	34	82	41	84	35	91	33
TGGGTTATCAGCGGGT	ref_2597_missing	15	17	16	16	19	13	24	12	33	17
TGGCGCCCTAAGCGAC	ref_2597_missing	24	33	22	18	28	13	38	12	32	15
TTCGCGCCTTGGCGTG	ref_2597_missing	9	21	11	5	16	6	18	8	21	6
CCAAGCGGTATGGCCG	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
GGTGTAGACCGTTTCC	ref_2597_missing	7	12	8	4	6	6	13	6	15	2
CTCCATAACGTGGCTC	ref_2597_missing	0	5	0	2	1	3	5	0	1	1
GCGCATTCATGGAAAA	ref_2597_missing	21	29	29	24	39	25	59	26	52	31
AAAGTGAGGCCGCTGT	ref_2597_missing	16	23	25	9	23	21	26	7	41	12
CCATTACCGATCACTT	ref_2597_missing	6	8	3	11	6	9	9	4	6	6
CTTCATTAATGAGTGT	ref_2597_missing	16	37	27	22	38	14	34	20	39	21
CGGCAATTATATTTGA	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
GATTTGGTGGGATTCG	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
ATGAATTTTATGTCTT	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
GAGTTCAAACGGCATA	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
CGTTTGACAAACGCTC	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
TGCACATACAAAACCT	ref_2597_missing	3	29	18	19	18	19	31	11	23	5
TTGTGGCCGTCTCCAC	ref_2597_missing	49	84	61	65	88	54	114	48	121	41
TCGATCATGTATCGCT	ref_2597_missing	18	25	19	9	29	11	28	14	24	10
CCAACTCGTTCGTTTG	ref_2597_missing	6	21	11	12	14	3	16	4	12	17
ACTTCTTATGATTAGG	ref_2597_missing	17	46	22	20	44	20	44	23	36	14
TCCTGTCCGGCCCAAA	ref_2597_missing	3	9	3	3	3	5	7	0	8	1
TGTTCATGCTCGAGTC	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
TGTCTAGTGAGAATGT	ref_2597_missing	4	9	7	6	4	3	3	2	12	2
TATACCCGGTGATTTG	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
TCCTAGATGATTTCAT	ref_2597_missing	5	17	7	13	20	14	26	5	22	12
TGGTCGTAGCATGTTA	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
TGATCTTATGTTACTT	ref_2597_missing	32	29	35	23	33	21	34	20	59	13
TACTGGTCCTGGGGCG	ref_2597_missing	28	43	35	27	69	22	51	20	47	24
TTAGTCGAGGTATTGC	ref_2597_missing	9	18	13	6	9	7	16	9	18	9
ACAAATGGAGTGTGTA	ref_2597_missing	11	17	5	9	12	7	13	8	11	3
ATGTTACGTTTCTGAA	ref_2597_missing	9	22	17	11	26	10	25	11	30	10
AATTCCCCTTCTGCGC	ref_2597_missing	4	7	8	2	10	4	15	8	10	0
AGTTTGCCCCTATGAT	ref_2597_missing	25	64	41	22	41	34	42	34	50	34
TAACCTTTTAGTACAA	ref_2597_missing	0	0	0	0	0	0	0	0	0	0
ATCATATCTTCATGGT	ref_2597_missing	33	29	35	30	44	22	36	24	57	19
GGGTTTACTTACGGTT	ref_2597_missing	1	3	2	1	3	0	3	1	8	0
CGTTAGCAGGTACTAA	ref_2597_missing	25	47	33	33	62	22	46	25	66	40
ACATGACACCGGGTAA	ref_2597_missing	4	12	7	10	11	10	9	3	12	6
CAATCGGGTTAGCGCA	ref_2597_missing	74	146	115	78	148	77	145	90	137	74
CGGTCGTATTATTCAC	ref_2597_missing	12	43	7	6	54	1	40	12	57	7
CCTAGTCCTTCCTATA	ref_2597_missing	3	19	2	4	20	5	16	3	19	0
ATTGCGGGTTAGTATC	ref_2597_missing	14	14	6	1	18	5	7	5	12	4
ACGAAAAAGGAAATGG	ref_2597_missing	6	13	9	6	12	8	15	1	16	8
CCAATGCAGTCGTGGC	ref_2597_missing	0	11	1	1	8	1	5	0	15	1
ATCACAATCAGTCGCT	ref_2597_missing	34	58	49	32	64	29	73	36	95	31
TCCAATATTCCTTAGG	alt_2171_RC	133	42	170	100	42	105	46	90	61	116
TGGATTCTATATAGTG	alt_2171_RC	58	23	103	77	10	52	18	65	11	66
ATCACTATCACACTTA	alt_2171_RC	61	18	75	76	35	66	13	58	16	63
ATAACGTCGGATCGTG	alt_2171_RC	278	90	321	256	93	219	92	269	107	226
GTTTTTTCTTGGAATC	alt_2171_RC	226	79	295	257	85	248	76	250	92	216
CGTAAGCGTTACATTT	alt_2171_RC	255	55	295	235	58	270	49	236	62	241
CATGTTGGTCACTAGA	alt_2171_RC	176	55	197	201	56	136	69	157	63	168
AATATGTTGAGCCATG	alt_2171_RC	253	59	301	206	84	225	63	224	85	192
CTTTTCATCCTTGGTT	alt_2171_RC	38	16	41	43	9	47	4	37	12	21
TCTTGTTGTGTTTGTC	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TTCCCGAATTTAGCAA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
GCATAATGTCCGTGTA	alt_2171_RC	66	20	63	47	18	65	13	48	18	44
TATAATCTGCAAATTA	alt_2171_RC	609	184	691	592	202	617	198	571	182	516
CCGATCTGTTGAAAGC	alt_2171_RC	166	41	175	171	46	154	54	155	57	137
CCCCCAAGTAGCCACC	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TCTTAGCTATTGAAGG	alt_2171_RC	253	103	339	281	97	211	68	230	97	217
TTTAGTTATTTTAGCA	alt_2171_RC	334	120	382	311	91	328	129	246	122	273
AGTGCGGCCAAAAACT	alt_2171_RC	237	67	255	278	65	201	84	197	86	224
ACTCAGCTGTCTGAGG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
GGACACGAGGTATAGA	alt_2171_RC	45	11	69	50	23	56	23	61	9	47
TGTCTCCCTAGTACAG	alt_2171_RC	101	50	113	102	48	97	35	98	52	104
GAAGAACGCCCTCAGT	alt_2171_RC	192	65	222	171	68	184	59	202	58	187
CTTGCCAATACATAGT	alt_2171_RC	42	10	41	36	17	36	9	27	23	32
GCCCCTGCTGCTGCCA	alt_2171_RC	61	26	75	87	23	85	31	93	25	62
GTCTCTTCACTTCCCT	alt_2171_RC	264	62	331	256	88	250	98	211	90	238
AGATATCAGAAGTACT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
AGTAACGGCTATAGAC	alt_2171_RC	48	10	55	33	15	45	14	41	17	43
CACTTTCGCCTTTAAA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CTTTACGTAGCCTAGC	alt_2171_RC	105	22	100	117	38	94	38	79	30	89
TTTGGTAATTTTTCAG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CGTGTCATCGTCCACG	alt_2171_RC	258	107	318	226	93	238	84	244	85	235
AGTACGCATGCTAATA	alt_2171_RC	231	84	347	258	84	250	87	221	109	236
TACGCGGATGAATGCA	alt_2171_RC	94	27	133	109	30	62	27	105	31	100
TATCAGGCCATTCTAC	alt_2171_RC	16	8	14	18	6	14	1	13	6	14
GTCTCGGGGCACTTCT	alt_2171_RC	691	230	849	656	223	654	241	614	287	631
CCTTATAGTCTTCGTG	alt_2171_RC	68	26	79	83	35	64	34	51	26	64
GACGTGTCCATTGTGT	alt_2171_RC	108	30	119	95	30	102	40	79	31	87
ATTCGTCAGCCATTTT	alt_2171_RC	81	13	79	68	15	68	11	69	23	76
TATCCACGAGAAACGT	alt_2171_RC	66	23	102	66	21	57	15	78	24	70
GTTTTCTTATGATGAG	alt_2171_RC	92	22	107	90	23	71	25	80	22	78
GGGTCGCCTCCCCGTC	alt_2171_RC	7	28	4	9	27	1	44	6	28	4
AGGTAAACAATGTTAT	alt_2171_RC	65	25	102	70	23	68	34	83	21	73
TCAGGTAACACGTAAG	alt_2171_RC	44	11	74	79	18	43	19	61	30	57
TCAATTTTGATTATCA	alt_2171_RC	160	62	199	155	50	127	54	98	50	155
GTGTGAAATTGATGCA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
ATACGCTTGGAGGAAC	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CCCTGTCGTTGTTTGT	alt_2171_RC	27	17	69	44	14	50	27	35	27	44
CATCGTTAGTATTGAG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CTTTCTGGTTAAACAC	alt_2171_RC	238	87	270	203	66	244	81	191	90	186
TCATAGCGGTGATTCG	alt_2171_RC	39	14	44	43	14	46	11	29	13	37
TCCCGATGTAATTTGT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
AAGTTATAAGCTGGGG	alt_2171_RC	352	94	460	403	105	346	108	303	128	323
GTCCCTGCAGACATCA	alt_2171_RC	245	59	231	202	59	164	58	186	65	155
CGTGACTTACGTCTGG	alt_2171_RC	16	5	19	22	12	15	6	14	7	14
AGTAAAAAACCATGTC	alt_2171_RC	198	63	210	209	50	173	67	164	65	165
CTTAGGTGGCGTACCT	alt_2171_RC	202	81	256	206	89	202	82	196	82	193
CGCTGCTTCGAATGCG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TTACTATCAGATGTAG	alt_2171_RC	17	8	16	16	5	17	4	20	7	26
GCGGAAATAGGCCTGG	alt_2171_RC	76	19	81	87	16	67	34	73	30	68
TAGGACATCCCCGGTA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TTGGCGATGGTTCACA	alt_2171_RC	109	44	151	111	42	105	55	116	46	111
GTCCGGGAATCCGACC	alt_2171_RC	49	11	75	61	18	62	18	50	19	61
TATAGTCTTATTCGTG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TCCTTTGGATCACTAC	alt_2171_RC	15	1	19	14	3	12	2	10	11	9
GAACGTAATTAGGCGA	alt_2171_RC	174	48	168	184	62	136	28	148	51	142
CGTGTATTACGTCTTA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TCAGGAGGACCCACAT	alt_2171_RC	43	14	36	29	7	32	16	36	16	24
TGGTTAGGATAGGAGT	alt_2171_RC	37	26	69	53	16	46	19	49	27	44
GCGCTTGGTCTGGAAT	alt_2171_RC	137	51	163	171	47	165	39	149	55	153
ATATCGGAGATCTTGC	alt_2171_RC	49	14	65	68	17	52	7	56	9	55
AGCTGTTAGTTTTCTC	alt_2171_RC	121	40	165	122	49	122	51	106	52	105
TGTTAAAATCTGGTTT	alt_2171_RC	154	63	240	175	55	181	73	158	65	183
TCTCCGATAAATAACG	alt_2171_RC	233	68	230	213	65	193	70	181	73	212
TGGGTCGCCATAGGGT	alt_2171_RC	263	74	357	262	89	268	78	261	85	231
TGTTCATGCCGCGCTG	alt_2171_RC	51	19	86	57	22	55	38	53	21	56
TTCTTGTAGTAGCGTA	alt_2171_RC	70	31	85	74	16	66	28	92	21	73
CGCTACTTTCGGTACG	alt_2171_RC	18	1	15	13	4	18	4	17	2	14
TCATGATTGTAGCTCC	alt_2171_RC	95	44	135	95	39	99	30	107	42	81
TATGCTCTGAGAAGAT	alt_2171_RC	74	18	95	49	23	73	16	74	24	68
ATTTCCAAATCAAACG	alt_2171_RC	20	6	18	6	3	11	3	15	7	7
GTACTCCAAATTACAC	alt_2171_RC	17	5	18	10	3	9	3	7	6	4
CGATTGCCACTGCGAT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TTATGGCCCGTGGAGT	alt_2171_RC	52	17	74	59	13	50	22	54	26	42
GACTTCAGAGCGCTCT	alt_2171_RC	87	17	95	71	18	66	18	71	18	91
TTGCGGACGGATAGAT	alt_2171_RC	33	16	40	47	14	35	13	52	12	37
ATGTCTTCGTTTATCT	alt_2171_RC	134	41	152	124	39	101	41	117	50	115
TTTCATTTGTGCATTT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
ACGTGAACCTAGCTGC	alt_2171_RC	89	29	99	105	48	92	33	83	29	79
ATTTCGAAAAGGGTTG	alt_2171_RC	219	57	231	168	59	150	67	191	56	149
AGACTTTTGAACAATA	alt_2171_RC	221	73	289	251	100	235	78	259	80	220
TTGGTCTGATTGCCGG	alt_2171_RC	76	30	117	92	28	86	23	78	34	74
CTTTTTGATTTTTGCG	alt_2171_RC	166	43	174	161	71	168	68	155	52	171
TGTCGCTCCTGAGCAT	alt_2171_RC	206	71	264	235	90	244	83	210	84	239
GATTACCTCTAGCCAG	alt_2171_RC	24	10	38	29	13	19	10	21	17	23
TGGATTCTAATTTTCC	alt_2171_RC	126	46	141	119	37	126	41	143	45	103
GCCTTGGATTTCATCA	alt_2171_RC	70	19	105	53	36	67	25	72	24	84
AGTCTCTGCCATTGAC	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TTTGATGTAGTGCGCT	alt_2171_RC	56	18	70	52	15	44	18	41	22	37
ATATGATGACGCATTT	alt_2171_RC	669	143	717	638	204	576	209	572	156	569
ACCCTACTTCAATTAT	alt_2171_RC	133	61	171	144	44	155	44	130	52	124
GATAGATTGCTTATTT	alt_2171_RC	561	158	643	586	148	553	189	524	203	528
GTTCCTAGGCCGGTCA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
ACATCGAATAACCTTG	alt_2171_RC	21	5	23	18	7	28	6	14	4	30
GCGCGTCTGATCACTG	alt_2171_RC	494	130	617	567	156	515	164	530	185	486
TGGCCGGAACTACCCG	alt_2171_RC	1	0	1	0	0	0	0	1	0	0
GCCTTACTGGGTCCAT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
AATCAACATTTCTTGT	alt_2171_RC	140	41	160	130	36	122	39	111	36	112
TTGCCGAGTTACATGG	alt_2171_RC	137	28	163	129	47	134	35	150	42	132
ATGAATAGTTGCAGAA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CGGTGTAAGGATAGGG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CATAGTATTAGATTCA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCGAGGTTGTCG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
ACAGCAATATGGGTTG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CTTATTTATATATTCA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
GGGCAGATTTAGGACT	alt_2171_RC	36	21	48	26	10	34	15	26	10	26
TTAAACACGGCTTGCT	alt_2171_RC	102	34	117	98	27	99	26	87	36	86
AAAAATGGCGCGCCCA	alt_2171_RC	45	7	64	37	12	40	10	40	15	47
GGTGGCGTAGTTCATT	alt_2171_RC	17	3	23	28	9	22	11	11	12	17
GGACTGAAATTTTGGT	alt_2171_RC	60	27	106	88	22	87	29	67	37	55
ATTTATCTCCTGCCGC	alt_2171_RC	145	43	169	134	40	135	49	160	62	127
TTCTAGGTCCATGTCC	alt_2171_RC	47	37	94	90	30	70	32	70	26	54
TGAGAGCCCCGCGTCC	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CCCGTCCTCTAATCGT	alt_2171_RC	4	19	2	8	17	7	17	1	18	3
CGGGTGGTACGTAACT	alt_2171_RC	74	17	72	72	28	42	15	52	19	57
TTTGGTCTTCAGGCCA	alt_2171_RC	1	3	1	4	0	2	4	5	1	1
CTGCAACCGGTAAATA	alt_2171_RC	101	39	118	117	56	83	34	86	43	78
TCGCGGAAAACTCACA	alt_2171_RC	92	29	99	79	31	81	31	89	26	77
CTCTGTAACTTCGACG	alt_2171_RC	59	22	80	44	14	41	28	48	31	34
CGCTCTCCAGTATAGC	alt_2171_RC	15	10	20	21	5	11	6	20	4	12
TATGGGATTTTGTGGG	alt_2171_RC	61	16	59	57	13	64	20	33	9	44
TCGTGTGGTCGTATGA	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
GCTGTATAATGTGATC	alt_2171_RC	46	13	52	55	16	68	13	53	12	37
AGCATTTATGTGATTA	alt_2171_RC	130	52	151	143	41	130	31	129	36	129
CTCATTGTCCCTCTCC	alt_2171_RC	25	41	22	21	23	11	27	20	25	14
GTATCAGTAGAAATGG	alt_2171_RC	66	23	62	53	22	52	17	47	35	40
GGGAAATCTTACGAAT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CACCCACGGACAGTTG	alt_2171_RC	12	9	38	23	9	28	18	21	9	13
TTTCGTGGTTTTTGGG	alt_2171_RC	342	123	453	332	102	342	116	308	128	275
TTTACGCTCAAGGAAA	alt_2171_RC	0	0	1	0	0	0	0	1	0	0
ATCACACCGCTCTCTA	alt_2171_RC	39	30	60	53	32	37	25	39	24	37
CTGACAAGAGACGTAA	alt_2171_RC	59	12	61	37	13	45	28	49	22	29
CTCTGGGCAGCGTCTG	alt_2171_RC	45	14	40	33	16	33	7	36	5	21
TGAGCTTGACTATGAG	alt_2171_RC	208	70	227	189	58	188	71	146	62	177
CTGTACATTGGTCGGC	alt_2171_RC	40	21	41	47	23	30	18	20	18	27
TCTGCGCGCCTATCAC	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
ATGAACAACCTGGCGA	alt_2171_RC	225	66	273	232	64	212	77	231	75	194
TTTAGCGGAAAGATTC	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
GCTCGAGTGGACGTGT	alt_2171_RC	53	5	53	58	23	45	11	52	23	41
ACGGTCACACGAAATT	alt_2171_RC	31	18	35	30	34	28	27	30	28	27
AACGTTGCATGGCGAG	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
ACGTAGGAGTTTCAAT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
TTGCCTGTATCACTCT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CGAGTCTCCTCCCCCC	alt_2171_RC	38	7	22	22	10	35	14	21	11	19
CAGGTTCGAATAGATG	alt_2171_RC	45	20	51	31	24	25	16	37	19	39
TCTCAGTTGGGTTATT	alt_2171_RC	0	0	0	0	0	0	0	0	0	0
CGAAATTCCTATAGTT	alt_2171_RC	25	6	21	17	9	16	8	22	12	12
TTGAATAGTTGCAGAA	alt_2171_RC	127	37	177	146	47	131	47	134	47	105
GAAACTTACGCTACTA	alt_5553_RC	171	117	183	151	127	146	116	135	137	152
TAGCCTCCGATCATAT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
TCAATAGGTTGTACAA	alt_5553_RC	4	4	12	9	4	12	4	9	9	6
TCGTTTGTGTGAAATT	alt_5553_RC	128	97	157	124	90	144	103	107	112	112
TATCACGACGGCGTTT	alt_5553_RC	60	27	64	39	24	44	48	31	40	40
CGGACAAGTCCCCCTG	alt_5553_RC	85	50	91	83	59	69	55	70	47	76
TTAGGTCGGCACTTGT	alt_5553_RC	130	81	129	108	63	115	113	93	95	96
CGTTTGTGGGTGATGC	alt_5553_RC	68	45	91	53	42	56	51	50	43	63
TTGAGGACAGTGTTGA	alt_5553_RC	13	5	14	5	9	5	7	18	9	7
GGTATCGTGTATGATC	alt_5553_RC	35	31	51	43	18	42	38	37	60	40
ATGGTACGAATCTCAT	alt_5553_RC	156	102	155	186	105	130	89	127	116	119
TGCTGTGATAAGATTC	alt_5553_RC	93	92	120	111	83	108	75	102	78	77
TCGCAACGGCTCGCGT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
CAGTAATATATCATCA	alt_5553_RC	32	27	57	42	19	30	32	31	38	40
TGAATCTCTCGGGTTG	alt_5553_RC	20	14	21	10	15	18	17	28	13	20
ACTTTGTTCTTCTTAC	alt_5553_RC	127	84	163	128	79	118	101	94	94	94
TGTTAAGAATCGCTCG	alt_5553_RC	196	105	184	151	144	144	139	173	146	151
CACGGGTTATGTTCAG	alt_5553_RC	63	37	64	47	41	49	49	55	50	50
CTACACTGTCTGCATT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
GTGACTACGAGCTCGA	alt_5553_RC	278	173	300	230	198	238	199	207	204	240
CTTTTTGTTGACTACC	alt_5553_RC	31	16	29	14	18	26	18	20	24	16
CGATTGGACTGCTTCG	alt_5553_RC	57	49	56	35	36	34	50	37	48	38
CGCGGTATGACTGCGG	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
AATGTGTCAACACCTC	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
GGGAGGGTGATCCTAC	alt_5553_RC	5	4	13	6	9	9	6	5	4	9
GAGTCTGTCTGATCCC	alt_5553_RC	28	18	23	22	17	19	17	22	21	20
CGTGGCGTCATCCCGG	alt_5553_RC	41	23	59	37	20	47	28	38	29	51
CTCTACGATTTAGCGT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
CTAGGTTTGGTTCTGT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
TGTCACTTGTGCCAGC	alt_5553_RC	221	97	259	155	142	214	120	169	139	200
GCTGTTAGTACGCCTT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
TTTGACAGGGAATATT	alt_5553_RC	26	10	18	13	12	15	14	15	13	16
TTCGCGGTAACACTTT	alt_5553_RC	192	110	243	167	111	177	110	156	137	156
TCAAGTTCATCTTCTT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
CGGGACCGCCTAAGGA	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
TCTTAAGATCTGGTCA	alt_5553_RC	86	66	97	98	64	89	84	85	82	82
TATCAGGTTTCATTTA	alt_5553_RC	42	42	53	45	20	35	22	30	32	30
CCGGTCGTCACAATTC	alt_5553_RC	28	66	32	39	74	37	71	35	71	30
TGATCAATATAGAATT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
CAAATCCTTCAAGTTT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
GAAGTGTCTCGCCTGA	alt_5553_RC	421	241	478	391	274	368	236	408	276	394
GATCTTATGCCACTCC	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
ATTAGCGTAGGGTAAT	alt_5553_RC	237	132	277	208	156	212	124	219	145	185
ACTCTTTGGATGCGAT	alt_5553_RC	16	16	15	19	22	17	17	9	17	20
CTCCCGTTTTTGTGCA	alt_5553_RC	18	144	32	22	120	26	127	17	108	22
TGTATCACGGGGCAAA	alt_5553_RC	8	8	8	8	6	4	15	9	3	3
CCGGGATTGCAAGGTC	alt_5553_RC	362	319	355	360	343	345	359	322	360	313
CACCATTCTCGGGCAC	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
AAGTGTTTGGCGGTTT	alt_5553_RC	32	28	57	47	32	52	25	31	41	47
CTCGGGCTTTCCGGTC	alt_5553_RC	73	47	101	62	61	79	48	76	55	62
TGGTACCCAGCTCGAG	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
ATACCTGTATGTGGCA	alt_5553_RC	19	22	20	18	12	18	15	13	10	9
GGTGTCAGGCGCTTTA	alt_5553_RC	56	41	60	50	39	62	46	56	38	49
GTGGCACCAATATATG	alt_5553_RC	111	75	136	83	80	84	89	78	73	83
TTTACGCGATGCTAAA	alt_5553_RC	38	49	55	62	33	39	47	49	56	42
GCCTAACGGTTTTCAT	alt_5553_RC	0	0	0	0	0	0	0	0	0	0
TATTAACTAGCCGGTT	alt_5553_RC	2	3	0	3	4	2	6	1	2	1
CCCGCAAACCGGCCAA	alt_5553_RC	4	11	9	6	15	6	8	6	11	4
GCAGGCTTGATTGCCG	alt_5553_RC	20	13	12	15	15	14	13	13	12	15
GGGGTTTTCTATCACT	alt_5553_RC	66	50	82	72	53	57	61	55	41	43
CTGTACTTATTCTGCC	alt_5553_RC	214	119	235	185	149	197	147	193	149	173
CATAGTGCATCGTGTA	alt_5553_RC	19	11	29	18	22	20	14	18	25	20
TAGTGACATTTCCGAA	alt_5553_RC	60	36	82	59	40	57	59	54	47	53
CGCTCGAATTTCTGCA	alt_5553_RC	55	28	55	47	43	52	45	49	35	46
CCATTGATGTAGGCAG	alt_5553_RC	189	136	204	163	130	182	119	203	122	158
GACCGGGGTTCTTGAC	alt_5553_RC	15	13	21	16	5	17	18	18	17	12
CATTGGACGTGTTATG	alt_5553_RC	133	109	136	119	119	104	116	131	130	112
CAGGCTATGCTGGTAC	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTTTCGTCACCG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTGGACGTCGCGT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTTTGTTTTGAT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTTTACTCTGGC	alt_2537_upstream	28	20	37	27	36	28	21	21	21	26
CGCGTTGGATTTGTTA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
CGTTAGTTTGTTATCC	alt_2537_upstream	31	33	58	35	40	44	15	34	28	31
TATGACTTTACGTCAC	alt_2537_upstream	166	90	175	175	114	187	92	168	92	136
TTGTTTTGTGCTACCT	alt_2537_upstream	84	67	113	88	66	85	67	68	63	66
CCTGCCGTAACACTAT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
ATGCCTAAATTTCGTC	alt_2537_upstream	4	12	11	5	1	14	7	11	10	9
CCTTAGTTAACTCCCT	alt_2537_upstream	5	12	1	3	7	1	11	1	5	1
CGCCTTGCGTCCGGTG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGACGGCGGTCGT	alt_2537_upstream	1	2	2	5	1	1	1	3	2	0
GGCCTTGCCGCGGTTT	alt_2537_upstream	31	30	46	21	29	28	33	21	34	16
GGCTTTAACGTAGGAA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGGTACTCTTTT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
CTGCACGTTGCTCTTT	alt_2537_upstream	20	21	25	31	18	28	15	24	19	33
GAGTCGAAACTTAATT	alt_2537_upstream	549	441	774	662	407	600	438	543	549	573
GATATGGACAGTTCCC	alt_2537_upstream	0	2	2	2	1	0	0	2	2	0
TCCTGTGAACGGTAGA	alt_2537_upstream	13	5	8	4	10	4	5	11	4	5
GTTATAACAATGACAC	alt_2537_upstream	21	12	21	15	14	20	21	17	19	12
TGCGGTACGGTCTTTG	alt_2537_upstream	46	32	49	46	40	46	27	42	41	34
ATTACATACCGGCATA	alt_2537_upstream	64	45	67	57	20	56	33	50	37	55
TGTTGGTATCTGATTT	alt_2537_upstream	22	19	44	33	26	25	28	29	20	24
CAGCTGTCCCCCCACT	alt_2537_upstream	39	68	48	50	56	34	86	33	65	33
AATACATTTGAAGTAC	alt_2537_upstream	23	20	20	27	15	25	21	21	23	26
TTCCCTCGACCTGATA	alt_2537_upstream	24	18	25	25	20	32	24	31	16	26
CCAACGTACTACGTTC	alt_2537_upstream	14	13	9	18	11	11	17	12	9	8
ATTATATGGCTTCGAT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCAGTGTACTGCC	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTAAGTTGAAGA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GGGATGATAAGGTCAC	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCCTTCACTCACA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGCAATCTTCCGG	alt_2537_upstream	30	25	50	51	33	33	28	47	31	36
CATAAATGCCTACCCG	alt_2537_upstream	112	110	135	122	98	93	111	109	96	92
TACTGTATGTAATCCG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTTCGGTGCTAGT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTAAGAAGGAGA	alt_2537_upstream	23	20	33	43	22	37	25	37	18	31
TTTATATTTGTTTCTA	alt_2537_upstream	127	126	178	168	77	175	105	157	78	141
TTGTTACAGGATAGGG	alt_2537_upstream	28	19	33	23	11	20	24	23	20	30
CCCGGAATTGCATGCC	alt_2537_upstream	2	10	2	4	11	2	6	3	9	4
GTCGTCGAACCGTATA	alt_2537_upstream	22	13	29	24	23	17	12	19	16	30
TTTTCCAAGTGAGCAC	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GATATTCTAATGCGCT	alt_2537_upstream	1	0	0	0	0	3	0	0	0	0
CACACCAAGCTTAGAA	alt_2537_upstream	52	30	70	63	34	42	39	56	30	46
TACTTGCTTTCGTAGA	alt_2537_upstream	5	13	9	14	13	10	6	3	7	10
TGCATTGTAGTGTTAT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GGTACCCAGAGGTGGA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGCCTAGATATGG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TATTCCGTTGGTTACA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTTCGCCGGTTTG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTAATCGGTCCAT	alt_2537_upstream	60	44	80	82	51	65	38	61	44	48
GTACAGTTGTTTCACT	alt_2537_upstream	39	38	61	35	40	44	28	39	28	37
GATGTAAAAGAGTAAA	alt_2537_upstream	27	10	25	17	11	14	14	28	14	11
CAGTAACCTTTTTGTA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCTCGCTCAAGTG	alt_2537_upstream	224	291	321	256	283	222	230	189	279	205
ACTCAAGCGCCTTTTG	alt_2537_upstream	81	47	68	94	58	72	55	70	58	74
ATCAGGAAGGGATGCG	alt_2537_upstream	19	3	21	16	9	10	6	8	7	10
CGATGAAATGTTTTCC	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
AGCGACATGCTTACCG	alt_2537_upstream	148	138	225	170	133	119	116	147	140	144
ACCATCCTAGGAACTC	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCTATTGTGTGCT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
AATTGTGTACTGTGTT	alt_2537_upstream	50	36	50	57	27	48	32	52	35	43
TATCGCACAGTGCTGG	alt_2537_upstream	104	77	127	116	75	89	75	88	75	75
TTCAGCCCTTTACCTT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
AGACGCTTGGTACCGC	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GGTCATATCCGTGTCA	alt_2537_upstream	13	7	16	16	9	12	12	12	16	15
GGTACTGAAAACACCT	alt_2537_upstream	65	39	50	61	23	41	37	37	46	43
TGGGCTCTGAAAGGTA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGGGTAGGACGGG	alt_2537_upstream	51	24	64	50	27	49	32	51	38	54
TCAGGCACTATTGTTT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTTAACCTGGGTTTTA	alt_2537_upstream	12	2	11	5	8	7	5	2	7	8
GTAGTTCTGCGTTAAT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
CAGATTTCGTGGATCG	alt_2537_upstream	4	4	5	6	3	3	2	4	2	2
GTACGCCGGGCACCAG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
GACATAAACCCACCTT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCAGGTAACCCCT	alt_2537_upstream	4	33	3	4	40	3	28	0	33	8
CGTGTCCTAACTCAGT	alt_2537_upstream	2	3	2	1	2	3	4	3	4	1
GGCCTTTCATGCCACG	alt_2537_upstream	23	11	28	16	23	13	17	21	23	24
TCCGCGCGTATTCTGG	alt_2537_upstream	11	8	19	18	7	12	8	7	11	12
GCCTAAATCCGGGTGT	alt_2537_upstream	17	20	20	18	15	16	8	17	15	17
CGGTACACTACACTCT	alt_2537_upstream	15	30	14	14	17	11	16	8	20	6
TTTCGTCAATTGGCAT	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGCCTGTGGATGG	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTAGGGTAGCTTA	alt_2537_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGGTATTGTATCG	alt_1786_RC	12	20	34	16	26	21	22	13	17	11
TAGTCACGGGCCGTTA	alt_1786_RC	21	15	16	18	8	12	17	13	12	11
TCGGTTTTCGTGCTTT	alt_1786_RC	25	45	43	54	37	40	52	45	39	28
ACTCTTTCACTGGTGA	alt_1786_RC	26	24	36	41	16	23	17	31	25	21
ACATCATTCCAGTTCG	alt_1786_RC	27	45	39	44	41	36	45	28	54	31
TTCGGCCTCCTCGCTA	alt_1786_RC	8	30	23	19	27	21	15	13	31	19
TGGCTCCTTTTCTGTT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CGTGTCTTCCCGTGGG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GTCCAGTCAGGTTACA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GGCTTGTCCCATCGTT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GTTGTCTGGGGTTCAT	alt_1786_RC	24	39	28	20	27	18	26	34	36	24
TTCTCGAAACGTCTGG	alt_1786_RC	45	63	64	50	70	58	72	32	82	49
TGGCCCCCGTAAGGCA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CTGGAGTAATACAACG	alt_1786_RC	12	6	11	8	9	17	10	10	4	4
TCGCTGGGCAGGTTTT	alt_1786_RC	39	29	52	34	45	36	51	30	59	31
TGGACCCCGTAAGGCA	alt_1786_RC	8	15	17	8	17	11	22	14	12	7
GGTGATCTGCCTTGCC	alt_1786_RC	5	7	14	11	6	10	10	7	15	8
TTCGCTTGGTTGCAGG	alt_1786_RC	229	289	289	242	291	243	282	213	317	184
TTATTCCCTCTCTAGG	alt_1786_RC	14	20	13	10	8	11	11	11	20	12
TGCGTACGTTGTAAAG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GGTGTGCGATTTTCGT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TAGTGAGGATATTGGT	alt_1786_RC	16	11	16	10	23	14	10	10	15	15
GCCACGCGATATTCGT	alt_1786_RC	22	32	21	21	27	17	32	19	29	10
TTTCCAAGACCCACAT	alt_1786_RC	33	26	36	34	37	35	35	26	34	31
ATACATCCTCAGAGCG	alt_1786_RC	11	17	11	13	10	5	19	5	15	8
CCAGAATTTGTTACTT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CCCGCATCACGTACAT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GGTACCTTCAAGTATG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ATAACCGTCTTCTTTT	alt_1786_RC	22	14	26	19	12	9	13	23	11	18
GCTCCGTTGCCTCATA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CAGTCCTTTTCTGGCG	alt_1786_RC	13	8	13	5	9	7	8	10	10	0
TTGTCATTAACTTTCC	alt_1786_RC	25	33	20	23	32	23	41	21	29	26
TCATAAAGCGCTGAAT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ATCACCCTGTGGCTAT	alt_1786_RC	2	8	6	4	1	5	7	4	5	3
TTATAGGCTACTCCGG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TCTACTTTATTCTTTA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GGCTGTGGCTGCTATG	alt_1786_RC	17	23	26	16	28	19	31	21	24	17
CTAATGGGCGACGAGA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CCAGGCTTTTGTCGGC	alt_1786_RC	59	70	72	60	82	58	73	61	77	53
GGTAATTAGGTCTATT	alt_1786_RC	81	102	94	92	93	87	89	89	92	72
CGGCATCGCAGCAAAT	alt_1786_RC	18	9	16	22	15	11	18	23	20	9
TTATCGGCTACTCCGG	alt_1786_RC	165	233	185	187	230	168	224	131	238	149
CTCGTTTGAAGCCTAG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TGAAAGTTTTACAATT	alt_1786_RC	7	16	13	10	7	9	5	8	3	7
CGTAGTCTCTAGGGAG	alt_1786_RC	42	44	70	52	45	45	71	34	53	40
TTTTTGGTTATTAGAC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CATCTCGCTTGTTTAC	alt_1786_RC	15	15	22	12	21	9	23	8	21	11
AGTTGGTGGTGGGTAT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TAACTTCCACTCTGAC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ATGAGCATCATATGTC	alt_1786_RC	19	18	21	21	19	15	23	25	27	16
TAGCGCATTGTTTTTA	alt_1786_RC	10	11	4	6	4	5	2	7	10	1
AGGGCCACGGCGGCTA	alt_1786_RC	66	101	72	74	75	67	83	50	93	56
ATGCAGTTGGACTCCG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GATTTTGTATTGGAGT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TCATTTTTTATCTCTA	alt_1786_RC	25	22	37	18	21	20	28	17	33	16
TCTTCTAGGTACACAC	alt_1786_RC	13	16	12	17	11	7	13	7	15	10
CTTCGGGTTTTAGGCC	alt_1786_RC	13	16	14	13	18	17	23	20	26	9
ATTGCAAGGTTATACG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TTGGGTTTTAGGCCCT	alt_1786_RC	1	9	7	8	7	5	11	7	14	3
TCTTGACCCTACGTCA	alt_1786_RC	28	49	61	43	52	37	63	33	65	27
CCCCCGGCTGTGTCTA	alt_1786_RC	7	4	3	4	7	1	5	0	8	2
ACGGGGCCAAGCTCTC	alt_1786_RC	27	23	27	25	18	14	22	18	24	11
CGCTCACTTTCTTCTG	alt_1786_RC	16	10	19	17	23	18	20	22	18	14
AGGACGTTTTCAGGTT	alt_1786_RC	95	133	127	111	133	82	120	109	119	102
GGAGAACTAAGTTCAC	alt_1786_RC	15	9	12	8	8	7	9	12	13	6
GTTTGGCTTTGTTTCG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GCTGGAACTTGTGCGA	alt_1786_RC	4	4	7	5	7	3	4	5	6	2
CTCTCTTGCTCCTAAT	alt_1786_RC	41	28	57	36	42	33	37	33	46	28
CACGTCAGAGATACCG	alt_1786_RC	18	20	32	12	20	8	11	17	8	19
AATATTAGATTAGAAA	alt_1786_RC	26	29	38	45	49	26	48	40	33	19
CGCAGGCTGCGATGGC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTTGTAATGCCG	alt_1786_RC	76	162	131	77	176	105	193	97	206	100
AATCTTTGTGGTATAC	alt_1786_RC	17	19	18	12	15	15	11	20	20	15
CGCGACCGCGGTTCAT	alt_1786_RC	11	13	14	12	10	13	15	10	13	11
CACAAGTGGCGTGATT	alt_1786_RC	35	44	64	55	49	45	70	39	60	42
GTGTATATTTTTCTTC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTTTATGAAATT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ATTTCGGTCGGATGTG	alt_1786_RC	29	24	31	31	33	16	29	35	28	30
GCCCATTTCCATCTAT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GCACACAACCGGCGAC	alt_1786_RC	4	9	3	5	10	3	10	1	7	4
CGATGGCTACGAACCT	alt_1786_RC	26	24	25	18	33	24	16	20	24	13
GTCTTAGTTTCTTGCC	alt_1786_RC	3	8	3	7	9	0	3	8	4	2
TCCATCGTAAATATTC	alt_1786_RC	8	15	19	11	23	6	13	10	20	6
ACCGTGAGCTGAAGGG	alt_1786_RC	17	22	13	23	30	17	13	22	24	17
AGCTATTTGGCAACCC	alt_1786_RC	35	37	36	32	39	26	46	27	57	41
GATGTCACAAAAAAGA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ATCATCTCATCCAGAT	alt_1786_RC	204	184	239	145	244	191	234	177	221	169
GATCGTGATATTGCAA	alt_1786_RC	0	1	2	0	0	0	1	0	1	0
TGTTTTATAGATCTAC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TACCCCTTCATACCCG	alt_1786_RC	3	1	0	2	1	2	3	1	1	3
TCTACTGTTGGCGCGT	alt_1786_RC	11	5	4	4	8	6	11	7	8	2
AGCATTTCGGCCACAT	alt_1786_RC	35	49	52	26	52	32	32	26	45	28
CACAGTCACAGCCGTC	alt_1786_RC	1	1	1	0	3	1	4	2	0	3
TCGGCTATTCAGATCT	alt_1786_RC	25	43	39	21	30	25	41	21	35	29
GATAACTCCTCTAAGG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TCGGGGATAAATTGGC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CCTCCTGTAATTGCCC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TGTTGACCGCTGCCTG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TTACATATCCCCCGGT	alt_1786_RC	9	26	17	17	23	17	27	11	31	17
TCACGATCCGGCCAGC	alt_1786_RC	48	53	45	55	56	44	46	44	52	43
ATGACTCGCTATTGGA	alt_1786_RC	1	3	2	4	0	2	1	1	2	0
TCCTTTTTCGCGGATG	alt_1786_RC	15	14	12	14	25	9	22	16	15	13
CTGGTGCGCTATCTCT	alt_1786_RC	2	1	7	4	7	5	3	1	4	0
TTCCTGGATTAGAAAG	alt_1786_RC	42	46	42	40	46	39	51	37	39	21
TGAGTCCTGTCATTTG	alt_1786_RC	27	66	25	34	34	33	42	29	65	33
TCGCCTAGAACAGTTG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CAGCGGTCGCGTCCTG	alt_1786_RC	25	32	27	29	32	18	46	28	45	18
ATTGTAAATGTTCGCA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TATCCTGGTGAGAGTG	alt_1786_RC	16	35	35	21	21	22	29	24	33	19
GCGGATATGGCTCAGC	alt_1786_RC	9	5	11	13	15	15	11	8	12	5
TTAAACTCGGCTGTTT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TGTACCACATGACAGG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ATCGTGTCCCCAGATT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GAACTCAGTACGCTAG	alt_1786_RC	27	22	20	23	30	15	27	15	24	11
GACGAGAGCCGCTAAC	alt_1786_RC	17	29	14	30	23	22	20	12	25	17
GGTAAGAGAGTAGTTT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TGGAGCATTAACAACG	alt_1786_RC	100	127	154	131	166	123	149	118	170	116
GGTGTAGCATTCCTTG	alt_1786_RC	13	20	14	18	13	15	16	21	33	15
CAGGTTTAAACGTCAG	alt_1786_RC	34	31	39	27	28	23	34	29	30	22
GCGTTTTATCACGACG	alt_1786_RC	112	124	106	64	87	66	105	89	104	87
GTACAATTCGTGCCCC	alt_1786_RC	9	17	10	12	18	10	14	6	12	14
TCCTACCCGCCGCCTT	alt_1786_RC	5	9	6	18	4	7	6	6	8	10
AATTCATACGAGGGAG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
AACATCTCATCCAGAT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGTGTATTGTAC	alt_1786_RC	12	18	24	14	14	9	28	13	16	9
TTTGTCTACGCTTATT	alt_1786_RC	33	35	46	43	41	29	50	15	52	28
TGAGGTGCCTTTCTAT	alt_1786_RC	17	20	17	20	12	15	16	17	16	15
TGACTACGTTAGCCCT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GCTCGCCATTCGGGCT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
AGTTACCTGACCGTTC	alt_1786_RC	5	7	7	7	7	7	15	5	7	6
AGCCTGCCCATGCTTG	alt_1786_RC	0	4	2	4	5	2	7	6	2	0
ATTGGTCCTGCCTTTC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TTTCTGGCGTCGGGCT	alt_1786_RC	46	54	57	37	45	37	73	42	64	52
TGTTTAGTGCTTAGAT	alt_1786_RC	2	6	6	6	7	3	4	2	7	2
GTTTATACGTATGTGC	alt_1786_RC	46	60	33	28	58	30	44	31	46	36
GCGAGGGCCGTCAATC	alt_1786_RC	12	8	8	10	8	7	14	14	7	6
AAGACTCCGATCGTAC	alt_1786_RC	14	15	24	12	20	14	21	10	22	12
TGGTATGATTTTCACT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CTAGGCGCAAGACTAC	alt_1786_RC	144	219	202	187	226	166	226	143	270	181
TGGCTGCTTCGTGGAC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
AGTCTGCTGCACTCTC	alt_1786_RC	16	12	16	7	12	17	10	13	25	16
AGCGGGAGCAACGCGC	alt_1786_RC	11	10	25	12	24	13	23	19	21	16
ATGGTGGCTCGTCCTG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CTAATAGATGCTCAGC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GCGATTGATTGTGTTT	alt_1786_RC	10	26	5	8	23	7	19	14	11	8
TATACTGGGCCTATCT	alt_1786_RC	39	43	51	36	39	30	52	30	46	34
CCCCTTGATCGTCCCA	alt_1786_RC	164	124	186	124	160	145	163	135	145	122
ATCACGAAATCGTTCA	alt_1786_RC	30	29	16	16	19	12	19	17	16	19
ACGGAAGATTATACAG	alt_1786_RC	18	15	10	13	24	18	18	12	12	11
GCTACTTCGGGGACAA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TCCACGCGGGAAAGGT	alt_1786_RC	16	19	21	13	21	19	24	26	19	12
CAGTTTCCGGAAGGAG	alt_1786_RC	6	6	10	9	9	9	7	4	9	11
GCCATGGTCACGCTTA	alt_1786_RC	2	4	4	2	5	0	1	0	3	2
AACCGATGGCAGTCAT	alt_1786_RC	0	0	1	0	0	0	0	0	0	0
TCATTTTTCAGTGGTT	alt_1786_RC	9	11	12	14	5	14	4	18	10	13
ACTGATGCTGGCCGTT	alt_1786_RC	36	34	39	30	42	23	41	30	43	34
ACGGACCGTGTTCGCC	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GCTGACACCCTGTCTC	alt_1786_RC	29	47	38	32	28	29	38	21	39	37
CGGTAAGCGGTGATGC	alt_1786_RC	21	24	17	15	44	17	44	15	33	13
GAACTCCGGCGGCAAT	alt_1786_RC	15	16	20	18	14	11	21	7	26	22
GAATTCTGCGTAATGC	alt_1786_RC	5	8	10	3	6	1	4	8	6	5
CTACTCTCCGCGCCTT	alt_1786_RC	11	12	13	10	14	4	6	8	21	6
GCCTGCAGGATTCAGT	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GTGTGCGGGACTGTGT	alt_1786_RC	6	15	4	8	16	4	20	6	18	8
GATCAATTGTTGGTCC	alt_1786_RC	8	10	3	11	5	5	9	9	10	6
CTACAGAAGTTATCAT	alt_1786_RC	6	3	0	2	10	5	3	3	5	4
AGATTCGTGCGAGGAG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
CGTCCGGAAAATCAAG	alt_1786_RC	23	38	39	43	33	19	43	23	41	23
ATCTATCTCCGTTTTA	alt_1786_RC	40	21	36	32	38	32	28	43	48	26
CCTGGACTCTGTGAAG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ACGACAGCTACTCTGC	alt_1786_RC	16	25	28	18	15	27	38	14	32	22
CGCTAGGCTCTGTTTG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
ACGCGACCGTGGTGTT	alt_1786_RC	32	49	32	41	46	32	60	44	28	31
TTTGGTCCCCCGACAA	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
TAGATAGTGTCTACCT	alt_1786_RC	39	48	40	24	35	31	44	27	47	27
CGAGCTTTCCCCGGAT	alt_1786_RC	61	104	108	94	126	79	104	80	103	77
CTCTGTTGATTACGAT	alt_1786_RC	8	5	9	14	9	4	4	10	10	4
ATTCAAGTTGTGGAGC	alt_1786_RC	10	19	12	12	21	10	25	10	16	6
TTAAGCAGGTATAAGG	alt_1786_RC	0	0	0	0	0	0	0	0	0	0
GCGTATTTTGGTCCTT	alt_1786_RC	74	95	96	72	73	65	106	54	82	67
CCAGGAGCTCGTGTGC	alt_1786_RC	2	5	0	4	1	3	3	0	6	2
ATTTGAGGACCCATCG	alt_1786_RC	55	87	78	56	87	48	81	55	85	63
CTTTATCCTTTCACTC	alt_1786_RC	47	42	60	52	50	42	55	59	59	45
TATCTAATTGCTTATG	alt_1786_RC	7	17	9	9	15	12	24	13	23	9
AGTATACATAACCCTG	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
CAGTACCCATCCCGTT	ref_5209_upstream	20	56	15	15	67	10	46	16	50	18
CAAAGTAGTAACCATC	ref_5209_upstream	12	21	28	13	17	17	21	16	19	12
CTATATCAGGCGTCCC	ref_5209_upstream	9	8	21	12	8	11	14	12	16	12
CATGTAGTTCCTAAAT	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
AGGACAACGTCTTGCG	ref_5209_upstream	12	16	15	10	15	15	10	11	15	4
CTTTTGAGTAATGAAC	ref_5209_upstream	15	30	38	32	28	26	25	25	39	27
TACGGGTGAATACAGT	ref_5209_upstream	2	4	2	4	5	3	4	5	2	2
CGGTGTTGAGTGTTAT	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
TCGGACATTCTAAGAT	ref_5209_upstream	30	53	37	34	50	31	32	31	62	24
AGTGCGCTCGGACAGC	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
CTTTATTCATTGGAGC	ref_5209_upstream	2	13	2	3	7	3	4	1	1	4
TGACGTTTTGAACTCG	ref_5209_upstream	4	4	10	1	7	3	6	1	2	4
GTAAGGACTGGTGCCG	ref_5209_upstream	54	48	55	42	63	39	51	41	56	53
TGCCCATATTCATAGA	ref_5209_upstream	86	108	106	89	81	106	90	58	98	93
AGCCATCCTCTGTTTA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCATGATCACATT	ref_5209_upstream	39	42	53	35	43	30	39	36	50	34
GTCTTAGCACTGACCT	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
CAGGATCCGTCATTTA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGTTCCTTAACGT	ref_5209_upstream	31	28	42	32	16	31	37	34	33	36
CCTCGGATTGTAAGGT	ref_5209_upstream	77	189	80	64	203	67	195	53	179	63
GGCAGACGTTTTTACG	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
GATAACACCTTGTCAA	ref_5209_upstream	22	20	16	14	27	20	30	26	22	17
GACCGTGAAGCAAGTG	ref_5209_upstream	191	191	245	175	235	190	227	200	296	159
AACGTCTCCGCTTTTA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGTAAAGTGGGGG	ref_5209_upstream	5	9	10	14	10	9	15	11	12	6
CAAAGGTTACTTAGCA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
CCGGGAGACATATTTA	ref_5209_upstream	25	42	53	38	46	36	65	44	65	41
TGATTGGTAGCACTTG	alt_5209_upstream	27	28	27	8	20	8	33	15	25	9
CGGATTCAACTTTGTG	ref_5209_upstream	0	0	0	1	2	0	0	1	2	0
CAGCCCCGATCCTCTT	ref_5209_upstream	21	46	23	19	40	28	61	17	56	13
AAGCTGGTTCAATCGG	ref_5209_upstream	21	30	38	26	16	16	39	18	33	19
ACGCCTTTCCAGTGGG	ref_5209_upstream	6	6	7	2	8	3	6	3	7	2
GCTTACTCCCGTCACT	ref_5209_upstream	2	10	6	9	29	3	30	7	15	3
CATATTCTAATGGAAT	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
TACCTTTCCTCGAGTG	ref_5209_upstream	52	56	55	62	61	48	56	48	53	42
TTTGTCTGGAATACCG	ref_5209_upstream	35	37	55	54	27	38	42	29	33	35
TCCATGCTATCAATCC	ref_5209_upstream	63	57	72	71	80	57	60	52	58	43
TCATCATCGTCGGGTT	ref_5209_upstream	15	8	12	13	7	6	10	6	13	10
ACGGTCAATCCGGACA	ref_5209_upstream	0	1	2	1	0	0	1	4	1	4
TCGCGAAATAGTGGAC	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCTTCGGTAGTTC	alt_5209_upstream	113	154	122	124	150	127	193	115	170	125
TTATTCTCGTTACATG	ref_5209_upstream	117	148	129	109	122	109	129	100	133	100
CCTCTTCCAACTAGCT	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGGCCAGTAATTA	ref_5209_upstream	165	186	242	166	148	189	193	144	228	155
GCGTTACGTTTGCGAA	ref_5209_upstream	19	23	30	13	39	19	22	14	37	23
TGTACTCATCGGCCAG	ref_5209_upstream	21	18	23	16	24	14	24	33	26	14
GTGCCCCTTGGGAACG	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
CACGGAGCTTTCAGAA	ref_5209_upstream	40	39	51	48	62	37	50	42	53	33
GATAGCGTTCCGAAAC	ref_5209_upstream	74	91	80	60	87	59	93	62	85	66
GTCTTTGTACTCTGAC	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGCATAGTCTAGG	ref_5209_upstream	11	34	6	3	38	3	29	10	29	2
GAACTGAGTGCTTTTA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTTCTTGCCAAGC	ref_5209_upstream	15	4	9	2	4	5	6	9	4	5
TATAGATGGGCCCCGT	ref_5209_upstream	31	16	34	43	23	28	21	30	22	22
CCTTGAGGTGATTAGA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTTGTAGCTCTCC	ref_5209_upstream	96	91	120	98	84	106	108	106	113	110
TATAGAGGTGGAGCTA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCGGATGCCATTA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
GTACCTTGACCCTGTA	ref_5209_upstream	103	78	95	77	91	81	97	68	99	68
TACGTCTAATTCTAGC	ref_5209_upstream	163	157	190	172	171	136	171	151	175	146
TCGAGCTCTATATGTC	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCTGGTGTTGTGT	ref_5209_upstream	29	38	30	38	30	28	43	22	51	27
TTCACATGCGTTGACG	ref_5209_upstream	24	33	31	35	34	21	34	28	28	21
GTCGGCTAATAGCTGT	ref_5209_upstream	3	9	6	5	6	8	1	7	7	6
TCGAAGTCCAGCAGTG	ref_5209_upstream	51	72	76	59	72	61	74	47	63	60
TGCCTATCGTCACGTG	ref_5209_upstream	9	13	15	16	22	12	14	12	28	10
GCCCGTTAGGCTATTA	ref_5209_upstream	34	36	57	38	31	30	48	27	44	27
TTATTTGTAGCTCCTT	ref_5209_upstream	28	20	25	20	11	22	22	19	24	22
CTTATTAAAATGGGCC	ref_5209_upstream	38	42	38	48	34	43	40	40	57	34
GACGATGCGTTAATTC	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
GGTGACATGGCAAGGT	ref_5209_upstream	26	16	20	27	20	29	27	26	36	23
GGTCCCCTGGTTGTAA	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
AGCGGTGTTTAGCGTC	ref_5209_upstream	0	0	0	0	0	0	0	0	0	0
AGCCTTTCGTCCACAA	ref_5209_upstream	55	59	51	66	67	54	75	49	80	55
ACGAATAGAAACGCAT	ref_6054_new	9	6	7	0	5	6	12	5	5	2
AATCTCCCCTCCCCGG	ref_6054_new	23	32	29	32	51	21	44	19	44	22
CTCGTTGTACCGGCAC	ref_6054_new	21	17	20	10	26	17	28	14	23	10
CTCAGTCTGCCGGGCC	ref_6054_new	23	50	57	36	78	32	79	32	101	36
GCGATCCCTGGGGTTT	ref_6054_new	0	0	0	0	0	0	0	0	0	0
CTTAGCAAGTTTCGGC	ref_6054_new	0	0	0	0	0	0	0	0	0	0
GTTCGGCCTATTAGTG	ref_6054_new	0	0	0	0	0	0	0	0	0	0
CCCTCGGCCGGGACTA	ref_6054_new	0	0	0	0	0	0	0	0	0	0
TGTGGACTCTCATCAT	ref_6054_new	22	25	33	24	32	27	27	21	48	18
TGGCCTCGATGCGTAT	ref_6054_new	33	34	31	29	55	33	44	26	61	30
GACGTGTCATGGTGCC	ref_6054_new	0	0	0	0	0	0	0	0	0	0
TGGTGAGTGCGTTCGC	ref_6054_new	48	81	70	43	95	39	60	50	72	51
CATCAGAGCTCCGGCC	ref_6054_new	61	62	65	60	83	53	81	48	82	62
GGAGGTCGGTTTCACC	ref_6054_new	59	76	69	61	70	53	75	62	79	56
AAGAGTTCACGTTTGT	ref_6054_new	13	39	19	19	31	22	36	19	33	13
TCTCCAGGGCCTCAGT	ref_6054_new	0	0	0	0	0	0	0	0	0	0
GCCTACCTCTAAATAC	ref_6054_new	5	18	9	7	15	3	19	3	22	9
CTCGGGTCCCGGAAAG	ref_6054_new	100	162	115	108	146	94	170	90	149	92
CTGGTTGGGATATGGG	ref_6054_new	1	1	0	1	0	1	1	2	7	4
CCTCCATTTCGGTTGC	ref_6054_new	35	65	44	40	47	32	67	25	74	28
CTGTTAAACAGGTCGA	ref_6054_new	0	0	0	1	0	0	0	0	1	1
TTTCCCGTCCTTATAT	ref_6054_new	46	82	60	50	106	35	95	57	97	47
TGCCTGGCTATGTAGT	ref_6054_new	43	85	40	38	75	44	62	39	73	40
GAAGTGAACCCGGCCG	alt_6054_new	11	32	13	11	21	7	15	11	15	10
TGTGATGCCCTATAAT	ref_6054_new	0	13	7	9	10	7	10	9	9	7
GCACTGGGTTTGCCGA	ref_6054_new	3	19	23	15	26	11	25	12	17	17
GTCCACCGGGGAGGCC	ref_6054_new	10	5	9	6	10	3	6	3	16	11
CCAGGTTCTGCAGGAG	ref_6054_new	6	42	7	7	43	7	39	7	38	3
AAATTCCTGGCTTCTA	ref_6054_new	42	61	45	39	50	45	72	34	72	39
TTATAGACATTTTGAC	ref_6054_new	1	2	1	2	1	1	5	2	1	1
TGCTACATGTCACAAG	ref_6054_new	16	23	11	18	21	13	40	13	31	6
GTACGTCTGAACCCTG	ref_6054_new	0	0	0	0	0	0	0	0	0	0
GGCTATGATTGTTCTC	ref_6054_new	17	26	27	25	39	14	56	30	48	23
TTGTTAGGCGGGTTAT	ref_6054_new	34	45	38	25	56	27	52	25	64	39
CTCGTATGTAAGGGAG	ref_6054_new	8	13	5	3	8	12	15	11	9	4
GCAGTCGCGCTCGCCC	ref_6054_new	10	21	14	20	13	20	17	13	22	11
GTTTATGCTAGCCCTC	ref_6054_new	0	0	0	0	0	0	0	0	0	0
GAGAAAGAGTTTTTCT	ref_6054_new	31	76	43	45	60	42	71	26	73	24
TATTTTCTCAAAGTAC	ref_6054_new	0	0	0	0	0	0	0	0	0	0
CAGGGCTGATAGAGGC	ref_6054_new	5	3	5	1	3	0	5	6	3	1
GTTAGTTTCGATTCTT	ref_6054_new	8	5	3	7	10	6	6	6	6	4
GATCCCATGCGCTCCC	ref_6054_new	8	13	12	12	12	9	20	7	9	7
GTTCGGCACATACTTC	ref_6054_new	0	0	0	0	0	0	0	0	0	0
ACAGGGTGAGGTCCGC	ref_6054_new	16	23	22	29	33	19	29	17	29	14
ATGGTACTGGTGATTT	ref_6054_new	0	0	0	0	0	0	0	0	0	0
TAGGTGCTCATGAATG	ref_6054_new	4	1	0	2	2	1	0	2	4	4
CGGTTTCATCGGGGCT	ref_6054_new	26	37	14	25	42	8	36	12	56	15
TCTTCGGCCGGGTTTG	ref_5946_new	11	7	5	7	5	2	12	8	6	9
TGTCACCATGTCTCAC	ref_5946_new	3	5	3	3	6	5	1	1	4	5
GGCTTGTAACCTTGCC	ref_5946_new	0	1	0	0	1	1	0	1	0	1
ATTGTGCTCCTCTAGA	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TTCATGATGGGTGTAT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CGCCTATTTTTTGATA	ref_5946_new	1	3	3	3	2	4	2	1	2	3
CGTTCTCCTGCAATGA	ref_5946_new	21	20	25	25	17	28	16	27	27	19
CGTCTGTCCGTGCAGG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CTTTGTACATGGTCTG	ref_5946_new	1	0	2	1	3	2	1	1	3	2
CCCTCCACTTCAAGGA	ref_5946_new	0	0	1	4	3	2	1	2	2	1
AAATCTCTAGAACAGT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
GTCGGGGCGCGAAACT	ref_5946_new	15	15	16	20	18	16	15	12	10	9
TGCGCCCAGGGACAAC	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TTACGGATTCCGCAGG	ref_5946_new	2	2	4	2	1	2	3	1	1	3
AATCTTGCCACTGTTT	ref_5946_new	1	3	2	3	1	3	3	1	1	1
GGTGTCCGGGCGTAAG	ref_5946_new	2	3	11	7	8	5	7	8	7	6
GACTCTGGTCCGGTAT	ref_5946_new	6	6	6	5	4	8	3	6	5	6
TCTAATGATAGGCTAA	ref_5946_new	7	5	9	2	4	10	4	3	5	8
CATCCTGTCCCCAAGT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
AGGGCATGTGCCCCCA	ref_5946_new	4	4	2	9	1	3	6	4	3	3
AGCATACTTCTAGCGT	ref_5946_new	6	5	2	1	2	4	1	1	3	5
AAATCAGGTCAGATCT	ref_5946_new	6	5	11	2	4	5	4	4	7	1
TTTTGGACTTCTGTTC	ref_5946_new	1	1	4	0	3	1	2	1	2	4
GGCATGCTGGGCAAAG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
ATTCTGCGGTGAATCT	ref_5946_new	5	2	2	6	7	2	1	4	5	5
AACGGGACCACTCTGC	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TCTGGCTTGGGTATGG	ref_5946_new	5	0	3	3	4	4	2	1	3	2
GTTACTCAGCAATTTT	ref_5946_new	3	4	5	1	4	0	1	1	1	2
TTGTCGAGACATCTCT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
AACGGGAGGCTCCAGA	ref_5946_new	4	3	7	11	4	3	2	2	6	4
TCAGTACTTCCACGGT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
GGTGGTCGGAACTCTT	ref_5946_new	7	10	7	10	8	6	9	8	8	8
GCTGTTACACTTAGTG	ref_5946_new	2	8	6	6	3	10	6	1	2	3
ACATCACCTATTTAAG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
AATAGGGTGTGGGAAT	ref_5946_new	8	7	4	3	4	9	5	6	7	7
TTGCGATCACATGCAT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TGCCCAGCCTGCAGAG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TTACCCTTGCTTGCGA	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CCTTAATGCGTCATTT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
GAGAACTCCATTTCCA	ref_5946_new	5	3	8	8	10	9	14	3	3	7
TGGCATGTATGTACCG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
AAATATCCACCAACAG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
GCAGTGTCCGCAACGG	ref_5946_new	1	9	6	7	5	8	4	2	2	4
AAGACCCATTTTCGTT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TGATGACACGTGACTA	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TTGTTCCTTCGCGGTG	ref_5946_new	0	1	2	3	1	1	1	4	4	1
ATCAGTTATTGTTTAT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CTTCTTGCTCCCTATT	ref_5946_new	0	2	3	2	1	1	2	2	1	2
ACTATGACTCCCTGTC	ref_5946_new	0	0	0	0	1	0	1	0	1	0
CCTGACGTTGTTCCGT	ref_5946_new	5	2	9	4	3	4	6	2	3	2
CACGCTTGATTTAGAT	ref_5946_new	19	9	17	12	7	4	10	7	13	6
TCTCTCTATCGGGTAT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CACTCTTATTGATATC	ref_5946_new	0	0	0	0	0	0	0	0	0	0
AGGAATGCCGCATTCG	ref_5946_new	5	11	4	6	1	5	3	3	5	2
ACATCTAGTATGGCGA	ref_5946_new	0	2	3	6	2	5	1	4	2	4
CAAACTTTTTCATGAG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TAAGGTGTACGTATTG	ref_5946_new	6	10	8	11	6	4	7	4	4	3
TCGTAACCTATTTACT	ref_5946_new	4	1	6	4	9	3	5	0	5	6
TCTCGAGTGGAATCCT	ref_5946_new	5	6	8	5	2	11	7	4	3	5
GTCTCGAGGCCCGTTT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CATCGAACATATTAAG	ref_5946_new	1	1	4	3	1	0	3	2	1	1
TCAGCTGAGTGAACTG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CAGTTTGCTTGTTAAG	ref_5946_new	1	3	1	1	3	0	1	2	3	0
ATCTTTCAGCAAGACA	ref_5946_new	0	0	0	0	0	0	0	0	0	0
GTACCCGCATGTCAGT	ref_5946_new	4	1	1	0	3	0	3	0	1	1
CTTAAGCTGAATGTAA	ref_5946_new	2	0	0	1	1	0	1	0	0	0
TAGGGTAACACTGGGG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
AAGTATTGTTGTCCCT	ref_5946_new	2	3	2	5	1	4	3	2	1	3
GTGCAGCGGTATTACC	ref_5946_new	2	2	5	4	4	3	7	3	10	1
TTGGTCTTTCATTCAC	ref_5946_new	0	1	0	2	6	1	2	2	2	0
GTATTGACTCTGCACA	ref_5946_new	4	3	1	2	2	0	2	5	0	2
TTGCGTATATAGTGAC	ref_5946_new	1	2	0	1	0	1	0	1	0	2
TCTCGTTATGTATCAG	ref_5946_new	0	0	0	0	0	0	0	0	0	0
GCTTCCTTAACGGTCC	ref_5946_new	0	0	0	0	0	0	0	0	0	0
TTAAGTTTAGACTCGG	ref_5946_new	37	39	39	44	36	35	39	33	54	35
CATTTTTAACCGTAGG	ref_5946_new	6	4	10	2	6	5	5	2	1	4
TTGGCTAGGTACTCTT	ref_5946_new	1	1	3	4	1	4	0	4	1	0
GTTACGTTTATCGGGA	ref_5946_new	2	2	0	2	2	3	2	1	0	3
TTGTGTCCGTCGTCCT	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CTCATTTTGTTCCCTG	ref_5946_new	8	6	6	5	4	10	6	6	4	3
ATGGGGGGGTTACACA	ref_5946_new	0	0	0	0	0	0	0	0	0	0
CAGCAGCTCGCCTAAT	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
AGCACGCAACATCCTT	ref_1841_RC	26	34	28	33	30	26	31	30	56	17
CTGTGGGGTAGGATTG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CAGCATCAAGCGCTTC	ref_1841_RC	25	17	30	22	12	14	24	20	9	18
TGGGGCAACAGGTGGA	ref_1841_RC	12	17	20	16	11	13	14	12	18	13
AGGTTGTTCAATCCCG	ref_1841_RC	99	74	84	96	55	86	75	71	78	87
AAATTTTTAGCATTTC	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CAACCATAGCATACTG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
ATGCATTAGGGTGGTA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
AAGTGTCAAGGTTTAC	ref_1841_RC	6	9	9	6	13	10	21	9	11	2
ACCTGAGATCTCGTCT	ref_1841_RC	14	8	7	15	10	5	10	9	12	12
CAACCAATGCTAACTG	ref_1841_RC	29	19	22	29	18	17	14	24	23	15
AGGTTTTAAAGAAGTT	ref_1841_RC	62	51	86	63	66	43	48	55	49	44
GGTAACACGCGGTCAC	ref_1841_RC	13	12	14	12	4	9	22	7	3	14
TTTTTGATGTCGGGTA	ref_1841_RC	54	42	66	29	36	45	36	42	44	46
TTTGGGGTGTTCCTAG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
GACCAAGTACAGGCAT	ref_1841_RC	36	35	55	43	27	30	39	44	32	27
AGTTGGTTTCTTTGTG	ref_1841_RC	13	11	15	18	14	10	4	15	11	18
ACGATTGCCTGCTGTG	ref_1841_RC	62	54	61	71	50	49	57	58	54	52
TTTAGTAACTGCCCGG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CGGCATTCGGACAGCA	ref_1841_RC	39	33	37	48	20	25	25	38	27	37
TATGATATCGCAGTTA	ref_1841_RC	9	6	16	13	4	7	16	14	9	7
CATTCTATCCTGTACC	ref_1841_RC	33	13	45	34	20	38	21	37	26	31
GCAAATTCGTTCAATG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
GTACGGTCCGGGGCAG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CCCGCCGAGATGTCAC	ref_1841_RC	48	32	70	50	42	38	27	32	26	44
CGTATCACCATCATCG	ref_1841_RC	25	25	42	32	19	25	33	27	17	29
GTACTCGAGTTTCATG	ref_1841_RC	48	39	51	55	53	36	44	53	67	40
TCCATTTTCTTTTTCT	ref_1841_RC	268	147	338	294	122	287	116	235	163	244
AAGTCGTAACACCATA	ref_1841_RC	25	17	21	17	11	24	17	22	13	20
ACTGGTTGACTCAGAT	ref_1841_RC	38	28	43	28	36	29	25	17	31	21
GAAGCAGACGGGAGAA	ref_1841_RC	15	8	26	12	4	14	10	6	8	12
AACGGGGCATAATCTC	ref_1841_RC	43	30	64	51	29	38	24	46	39	26
TATTCCAGTTCTGGCC	ref_1841_RC	3	1	4	2	1	3	6	5	1	7
GAGTTAATAATGCTGC	ref_1841_RC	11	7	18	14	15	10	10	12	10	19
CCGTATAATTGTCTAC	ref_1841_RC	21	12	10	13	6	19	20	12	13	13
ACTAGCGGAAGTTCTG	ref_1841_RC	9	7	10	14	8	5	7	14	8	11
ATGGCAGACCGGTAGA	ref_1841_RC	49	35	67	50	29	43	36	53	33	43
GTGACCCCGTATCGGA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
ATTGACGTGTGTTCCT	ref_1841_RC	197	126	208	220	139	196	122	175	150	183
CGACCACTGGAATGAC	ref_1841_RC	29	35	41	30	37	30	38	29	37	19
AAGCAGTTTGGCCTAG	ref_1841_RC	28	20	36	45	22	22	21	32	19	29
GAGTTCTTCAATTTTG	ref_1841_RC	22	31	43	32	18	23	22	34	34	27
AGAGACCCACCCATAG	ref_1841_RC	0	0	0	0	1	0	0	0	1	1
TCCTAATGTCCTGGTG	ref_1841_RC	174	134	240	180	117	164	148	123	170	164
CCTCGCTGGCACAACT	ref_1841_RC	102	68	125	114	53	102	72	88	78	76
TTGGTTCTAGAACAGT	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TGGATCGGGATTTCAT	ref_1841_RC	43	49	52	65	34	63	50	65	51	61
TTGGGACGTACGTACG	ref_1841_RC	32	18	28	35	27	38	21	26	24	30
TAAAGGGAGTTTCCTG	ref_1841_RC	20	10	23	16	12	15	9	18	13	13
CGAAGCGAACGCTAGT	ref_1841_RC	35	40	36	35	28	26	33	26	43	21
TTGCTACAGCCTCGCT	ref_1841_RC	38	44	65	47	63	54	40	49	48	29
CCATTATCGGTCCCTA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TACGATGACGCAGCTT	ref_1841_RC	17	13	17	32	8	12	13	16	14	9
CAGACTGTACTCGCGA	ref_1841_RC	5	16	9	9	13	8	5	7	16	8
GTATTAAACTACTTCC	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
GTACGTCATCTATTAT	ref_1841_RC	60	25	53	44	25	53	16	61	39	43
CGTGAAGTCGCCGCCG	ref_1841_RC	85	70	98	97	67	75	68	81	98	81
AATTACATTACGGCCT	ref_1841_RC	16	7	16	7	4	4	8	9	9	8
TTCGTACTTCGGCGTG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
AGCGCTCAACGGGATA	ref_1841_RC	139	90	129	121	94	120	97	123	112	116
GGTGCAACAGGCCACA	ref_1841_RC	28	23	40	37	22	20	37	37	23	24
TAAGCCACGACATGAA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
GGTCTCTAGAGGCGAT	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TGTTTACTGAGATGCC	ref_1841_RC	48	26	63	44	40	50	40	61	37	43
AATTTCACTAGGTTCA	ref_1841_RC	64	54	75	71	59	64	76	55	56	63
GGGATTAACGTACAGC	ref_1841_RC	27	24	32	21	25	29	17	28	18	27
TCTCAGCTGCGCATCT	ref_1841_RC	28	15	37	34	16	36	17	29	36	25
CGGTCCTTTTCACGTA	ref_1841_RC	91	166	110	86	172	51	176	81	212	71
TTGTTCACCCAGGATA	ref_1841_RC	40	18	45	16	33	37	34	27	28	21
TGTTCTCAACGGGACT	ref_1841_RC	36	46	48	41	38	39	39	46	46	36
AAAAGATTGTCGTTCA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TATCCAAGTTGTTTTT	ref_1841_RC	70	47	79	87	52	98	54	64	79	61
TTCGTTTGGCATACGA	ref_1841_RC	29	20	19	21	15	18	16	18	20	21
CCGATCTCGGTCGGGC	ref_1841_RC	67	45	91	61	47	59	55	63	45	52
GTAAACTTGCGTTAAA	ref_1841_RC	10	5	12	5	3	4	14	2	4	12
CTGGTCTCTGTCTACA	ref_1841_RC	99	82	100	72	77	68	81	91	95	82
GTTAATGTCGAAGTCC	ref_1841_RC	14	5	14	10	8	10	4	8	9	12
CGATCTGCCCTTCACA	ref_1841_RC	23	20	30	27	24	31	10	28	15	16
GAACACAATGATCTCA	ref_1841_RC	2	9	10	2	5	9	6	12	4	5
AGGTAAATATACTCTA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CGGATTCGGCAGAAAA	ref_1841_RC	55	39	66	53	43	47	45	44	43	30
CGGCACTGAGTTCCAG	ref_1841_RC	21	13	12	21	16	13	13	22	17	14
GTGCATCGTTGGGATG	ref_1841_RC	119	129	161	148	107	136	114	134	119	114
GACAACTCTAGAATTG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TTTCTGTATACCGGTC	ref_1841_RC	20	23	31	18	31	25	20	27	23	17
TTGCCACCTGTTCAAC	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CCTCGCACTGCGCATA	ref_1841_RC	5	3	12	8	8	6	5	2	3	5
GTTATTTTCAGCTCAG	ref_1841_RC	53	28	37	61	31	33	62	37	29	46
CTGCTTGACGCCCACC	ref_1841_RC	32	14	26	25	22	25	20	28	15	17
CCATCTCGGTTATCAC	ref_1841_RC	7	7	10	4	10	11	8	10	12	7
AGTCTGATGTTAATTT	ref_1841_RC	11	10	12	5	7	7	8	8	8	4
AATCAGGCAGTTGAAG	ref_1841_RC	21	26	31	19	10	21	16	25	22	20
GCTGCTATGATAAGCA	ref_1841_RC	19	21	20	19	11	21	18	11	17	10
ATAGTCGAGCATTGGA	ref_1841_RC	38	20	50	42	21	35	18	31	30	29
GAAAATATCATAGGGT	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
GCCTTTACGTCCTGTT	ref_1841_RC	3	10	13	8	11	10	12	15	15	9
AATCATAGGAGTTACA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CTCGCTTAAACGTATG	ref_1841_RC	2	4	4	5	6	3	1	3	3	3
CCCTGCCCTTCCATAT	ref_1841_RC	6	9	4	5	13	5	19	3	10	3
CCGGTGTGCATCATCT	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
GGCTACCTAGTTGAAA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TGTGCGGCGGTGGCAA	ref_1841_RC	48	37	52	47	31	43	38	39	35	29
AAACGCCCGCAGTTCT	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CTGTCAGGTCTGAGCG	ref_1841_RC	41	31	38	36	24	28	38	38	21	34
AATAAATTCATCTGTG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
AGACATGTAATGAATT	ref_1841_RC	30	25	31	32	24	31	30	31	19	28
CTTAGAAACGTCCAGA	ref_1841_RC	0	0	2	2	1	0	1	0	0	0
AAGGCCTTGTAACCTC	ref_1841_RC	25	25	42	37	39	29	31	24	36	21
CCGTCCGTAACGGCTT	ref_1841_RC	12	12	13	16	13	11	15	7	11	6
TGGGGGTAATGGTGTT	ref_1841_RC	11	26	18	15	24	28	21	11	18	22
GTCGCGCGGCATTCTC	ref_1841_RC	8	5	10	6	9	4	12	6	4	7
GCCGCTGATCGATACT	ref_1841_RC	62	46	99	66	53	48	56	55	36	52
GTATTGGCGGATAAGG	ref_1841_RC	17	15	36	25	18	18	26	26	23	25
GCGGCTTTTATCTAGT	ref_1841_RC	9	7	15	11	11	15	6	11	8	14
TAATTATGTTTTGCGC	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TAGCTGCCCCTTTCTA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
AGTTCGGCGATTCTAT	ref_1841_RC	57	39	66	46	38	46	27	47	29	47
GTTCTTTTTCCCGCAT	ref_1841_RC	15	7	9	12	12	14	11	11	8	14
CTTTATTATGGTCTCC	ref_1841_RC	17	16	5	16	8	7	8	11	9	7
TTTTTTAATCACGTAA	ref_1841_RC	31	16	34	20	14	25	13	20	14	32
GGAATGCGTTATATCA	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
GCCGTCGTCGTTCCCG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
CAATACTCCTATTGTT	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
ACCAGATGGGCAGTAG	ref_1841_RC	43	49	54	49	45	47	35	40	37	42
CGCTTACTGTAAACCC	ref_1841_RC	30	38	44	30	31	32	31	47	39	34
TTTTCCGGGCTCCGTG	ref_1841_RC	22	12	32	20	14	11	12	14	19	15
CAGAGAGTAAAATGGG	ref_1841_RC	40	29	50	55	29	36	38	40	24	45
ACTCATCAGATCACGG	ref_1841_RC	79	66	115	84	70	62	57	81	64	73
AAGAAAGAGTATAAGG	ref_1841_RC	20	21	31	35	10	30	22	26	18	16
TAGGAAATGTCATAAT	ref_1841_RC	9	8	17	16	12	16	10	20	15	13
ACGAAGTTATCAGTCA	ref_1841_RC	1	0	5	3	6	2	0	4	4	3
GCCAATCTTTAGGTAG	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TTAACGCATTTTTTCC	ref_1841_RC	29	29	37	32	33	28	30	31	35	22
AACCCTATGGCATACG	ref_1841_RC	29	21	40	37	32	35	23	19	25	37
GGTGTCCTACCCACTC	ref_1841_RC	0	0	0	0	0	0	0	0	0	0
TCTATTGTGGGGGCTT	ref_1841_RC	46	48	54	44	29	37	35	51	47	37
CATTATGTTGGTTCAA	alt_5648_new	29	34	45	33	52	26	53	35	45	24
TAGCGTGAAACCAGGA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
GGCATCCTTTTGATAA	alt_5648_new	27	37	34	26	36	27	29	18	31	17
GGAAAAGCTAGACGCT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CAGGTTTCCCGACGGA	alt_5648_new	10	18	26	12	21	19	23	14	19	20
CGTCGGTACTGTGATC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CGTCAAGACAATCACT	alt_5648_new	13	31	20	19	33	10	53	13	52	11
TATACACGACCTGTTC	alt_5648_new	34	46	37	35	51	20	42	28	40	34
TTGAGGCGCATATAGC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
ACTATAAAGGCGAAAA	alt_5648_new	11	14	15	20	18	18	24	8	19	14
GCGTGGTATAATGTGG	alt_5648_new	65	61	83	60	73	60	97	47	65	39
GTTTAGCCTGTATCGA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CCGCGAGCCTATGGAG	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CAGTATTTGAATACTC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TGTATTAACGCAATTG	alt_5648_new	5	2	5	5	2	5	10	2	6	4
GCCGTCCTCAGCCTTA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TTCATTAGCAAGCCTA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TTCGTCGAATTGGCAG	alt_5648_new	2	0	0	1	0	3	4	1	0	5
AAGTATTGCGTGACCA	alt_5648_new	27	17	22	17	30	32	26	26	32	19
GATCCTCTTTGACGAT	alt_5648_new	25	23	39	26	41	25	29	19	27	29
CCTTGAGCTCTGATCA	alt_5648_new	19	12	19	21	32	11	18	17	27	15
CATTGCGCCATTTCAA	alt_5648_new	8	1	11	3	3	3	13	9	5	4
AGGTTCAACGAATTTG	alt_5648_new	69	83	98	79	97	82	98	60	101	86
TTGGCGTACACCGCAC	alt_5648_new	14	18	15	19	25	16	12	11	22	6
TCTGCTTAGTAGAGTC	alt_5648_new	5	8	6	7	4	4	16	6	6	5
ATTCGCCTGAAGTCAT	alt_5648_new	1	1	3	4	0	2	11	2	3	2
TGTACTACTGTTGGAC	alt_5648_new	6	17	14	13	26	6	9	8	13	9
GATCAGGTGCGGCTTG	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CATTAGTAAGTAAGTA	alt_5648_new	42	36	40	41	51	36	41	27	31	23
TGGTGTGTCCCATTTC	alt_5648_new	32	29	33	21	38	25	39	35	31	26
ACACGCCCTCTCTCCA	alt_5648_new	0	0	0	0	0	1	0	0	1	1
CAGATGTGCTGTGCAA	alt_5648_new	23	44	29	39	39	28	39	34	62	35
AGTTTACATGACCCCC	alt_5648_new	8	4	6	13	3	4	5	3	9	6
GCTTTTGTCTATTGCA	alt_5648_new	32	33	21	18	28	13	26	8	27	14
AAATTATGACGATACC	alt_5648_new	108	106	116	105	106	100	126	95	116	82
ACGGTATTTTCCTTGG	alt_5648_new	60	86	80	72	56	71	63	54	76	60
CTTAAATGGGGTGTAC	alt_5648_new	28	37	41	24	31	19	36	22	24	19
AACGATCCCGCGGATA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
GTCTGACCTATCTTTC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TATACCCTGCTTTTTT	alt_5648_new	12	2	4	9	9	6	7	8	9	2
ATGATCGCTTCAACCT	alt_5648_new	29	25	34	20	17	27	34	21	33	32
TTTATATGGCAGGCAC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CCTTACTTTGCTGTCT	alt_5648_new	11	10	7	8	15	11	17	12	10	9
TGTTTTAGCTGGGTCT	alt_5648_new	15	16	21	9	18	17	22	14	12	11
TTATCAGAGCAACTTT	alt_5648_new	211	233	254	219	195	196	280	207	236	208
TTAGTATACGAGCCGG	alt_5648_new	5	13	12	8	16	5	12	9	9	8
GTCTCATGACTTGCAG	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CCCTTTAGCGACATTT	alt_5648_new	11	14	16	15	17	11	14	6	38	3
CCTTTTGCGGATGGAG	alt_5648_new	20	20	18	19	22	7	36	12	19	11
AGATGTTTTGCGTGAA	alt_5648_new	423	478	478	436	481	394	516	403	593	394
AGATTATTAGGAGATT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
AAAGTGGCCCGTGGTG	alt_5648_new	2	5	1	2	5	2	4	7	1	3
GGGCTTCCGAGTAATG	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TCTATCTTAGGTGCTT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CATACTTGTATTTTTA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TTACTTCTTTCACACC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TTTACGCAACTTTAGA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CCTAGCGATACGGCAC	alt_5648_new	12	33	16	15	25	13	27	18	20	17
GCCGCCGTACTCTTAC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
ATATTTGAGGCATGGT	alt_5648_new	133	161	181	161	146	146	179	149	168	137
AGCTTTTTACTGAGAC	alt_5648_new	24	6	9	7	15	13	14	14	13	12
ACCCAATATCATGCAT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
AAGCCTGCCTGGAGCT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
AGACGGAATTTCCAAT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
ACTTTTACTGTACATT	alt_5648_new	51	47	54	50	56	40	44	51	65	42
GCATTAAGGACCGCTC	alt_5648_new	48	65	95	42	84	65	74	45	73	54
GGCAGGGCGCCCATTA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TTAGAACCGGATCGTA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CTCCTTTGTGTCTCTA	alt_5648_new	3	9	3	10	16	3	21	4	20	2
TCGATCCGGCTACTAA	alt_5648_new	28	21	23	21	22	23	27	20	25	20
CGAAGACCATTTAAGG	alt_5648_new	22	35	11	31	26	15	26	16	27	19
CCAAGGGAACTTTCTC	alt_5648_new	8	7	8	6	10	7	8	6	10	3
GGGCTGAGCATTTCCA	alt_5648_new	54	79	84	79	79	62	71	61	90	57
CGGTCATGCGGTTGCC	alt_5648_new	31	49	37	28	49	41	41	26	53	23
CAGGAGATTCGTTGTT	alt_5648_new	6	3	2	3	2	4	6	7	9	6
GGCTCCATGTTGCGTG	alt_5648_new	101	80	113	97	87	98	82	83	63	98
CTCTTTGATCATCATT	alt_5648_new	38	34	52	36	37	41	27	32	32	18
TGACGGAATTTCCAAT	alt_5648_new	395	380	432	375	392	377	379	340	411	388
CCTGAATGTTATTGAT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TCAAAACCCTTTATAA	alt_5648_new	125	137	158	117	148	111	152	116	130	107
ACTGATGTTTCTGGGC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TTCATCGTGATTGTTT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CTCGGACCACCTCTTC	alt_5648_new	11	12	11	9	3	10	7	10	8	5
TTTTTTTACGTCTCCT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
GCTCCAGGTAGGGTAC	alt_5648_new	18	31	26	12	18	10	25	11	18	12
CGTCCCCCGCGGGGGC	alt_5648_new	138	200	159	162	188	145	209	154	204	164
TTCGCATTCCCCCTTC	alt_5648_new	7	5	4	8	3	1	7	6	7	4
CTCGCGGACTCCAATT	alt_5648_new	0	0	0	0	3	0	0	0	2	0
GAGAACGTCAGCCTGG	alt_5648_new	18	24	17	25	18	27	28	14	31	22
TGGCGGTACGGTGGCA	alt_5648_new	101	80	119	112	112	102	98	99	95	100
TCTCACCACCGTTTGC	alt_5648_new	19	23	26	19	16	13	15	19	14	13
TGTTAGGCAGATGTAA	alt_5648_new	72	95	73	62	77	70	93	59	112	86
TATAGACCCTTGCTTA	alt_5648_new	21	25	31	17	25	28	14	23	37	18
ACCGCTTCACCGTTAT	alt_5648_new	66	115	93	47	91	57	90	71	118	71
GCCGCCCACGCATACA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
AATAAGTTGGGAGCTT	alt_5648_new	27	51	47	31	51	39	42	36	46	23
CCTACTACGAAGTTCG	alt_5648_new	10	9	18	16	15	15	20	13	15	17
TGTTCATATCAAGCGC	alt_5648_new	9	9	12	7	8	14	10	4	13	7
TTAGGATGGGCGATTG	alt_5648_new	37	39	37	44	30	34	37	26	32	22
GTCTCCTCTTTCCGAC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
CCTGCCCATCCAATCA	alt_5648_new	22	45	32	32	46	22	42	28	77	23
TGCTCCCCTCTACCAG	alt_5648_new	0	0	0	0	0	0	0	0	0	0
ATTAGCCGCGCGGACT	alt_5648_new	35	35	33	30	45	27	47	37	43	48
TCCCGCCTCAGGCGGG	alt_5648_new	14	9	8	10	15	10	12	9	19	10
TTCGCCCCTCAGTCCC	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TACATGGTTGCTTGGA	alt_5648_new	0	0	0	0	0	0	0	0	0	0
TGATAGCATATAGACA	alt_5648_new	24	28	46	28	35	30	32	29	38	32
GGGCGTGAAACGAAAG	alt_5648_new	0	0	0	0	0	0	0	0	0	0
AGGCGGGCGCATGGTT	alt_5648_new	28	35	44	30	29	45	20	21	35	27
TCCATCTGCTCGCGCT	alt_5648_new	35	39	60	43	48	45	44	32	49	35
TGGTGTCCAACCAATC	alt_5648_new	4	8	7	8	2	8	5	5	4	5
TCAATTTGACTCGCAT	alt_5648_new	49	43	48	43	43	46	39	35	59	31
AATATGACGTGATTGT	alt_5648_new	9	17	15	8	14	11	17	6	21	8
GTTATAATTCTCGTCT	alt_5648_new	0	0	0	0	0	0	0	0	0	0
GGTCTGGCACAGACAT	alt_5648_new	59	41	49	39	53	38	31	39	47	22
TTTTTAATGGCTTGCG	alt_5648_new	9	28	10	8	21	2	21	6	31	10
GCCTCCTGTCCCCCAT	alt_5648_new	35	48	42	31	36	23	43	36	40	51
TCAATGCCGGTCATTT	alt_5648_new	32	63	53	56	45	36	54	51	62	33
TACCATTGTTATTCAT	alt_5648_new	35	51	45	49	61	36	56	50	44	40
CACCGAAGCTCTATCG	alt_5648_new	0	3	6	1	4	7	4	4	6	0
ACTTGGGCAAAGGATT	alt_5648_new	5	9	3	6	3	3	11	6	9	2
GTCATCCGAATCCCGG	alt_5648_new	20	33	28	15	24	19	24	17	16	14
GGGACGTCGAAGTAAG	alt_5648_new	0	0	0	0	0	0	0	0	0	0
ACGTGCCACTATAATG	alt_5648_new	25	51	27	22	30	30	31	23	36	28
TTTACTAGGCGCTTAC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CCACCTGGTTATGATT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
AACCTATTGGCGAGCA	ref_2817_reverse	36	50	26	33	36	20	44	18	40	22
TTAAAACGGGGTAGAA	ref_2817_reverse	65	93	104	85	103	94	99	71	126	71
CTGGGGTTGTTATTGC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCAGCGCTCATCC	ref_2817_reverse	11	31	28	27	20	13	36	22	30	21
ACATTGGAATATCATC	ref_2817_reverse	11	13	13	6	6	13	15	5	12	10
TAGCTCGTTTGTGTCA	ref_2817_reverse	8	17	6	5	6	6	7	10	11	8
TTAAGACTGCCGGGGT	ref_2817_reverse	122	224	126	142	235	101	225	104	215	102
TTGTATTATTATAACC	ref_2817_reverse	4	23	11	6	13	10	13	11	15	10
ATTAGAGAAGTCTACT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCTCTAACTTCTT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATCGACGGTTCCCTGT	ref_2817_reverse	46	71	64	52	96	47	67	53	65	56
CTCCCATGCGCCGTTA	ref_2817_reverse	8	35	9	12	49	13	33	10	33	9
CTCACACCGTATTGTG	ref_2817_reverse	2	5	2	1	5	1	6	4	3	1
GACGCAATGGGCCGAT	ref_2817_reverse	60	85	96	59	75	58	84	61	86	59
CTATGGGTCGCGTGAC	ref_2817_reverse	93	142	104	120	155	118	145	78	149	73
AACATATCTACCCAAA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGGTTTAGTTAAA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
GTATCAAAGGTTGTGT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTCTAGGAATTCA	ref_2817_reverse	6	7	3	5	6	4	4	1	5	0
GCTACACACGAGTAGT	ref_2817_reverse	21	33	26	14	26	30	39	20	39	6
TCCTATGATACCGTTC	ref_2817_reverse	32	37	35	32	44	29	35	32	51	17
CCTTTACACATTTATT	ref_2817_reverse	29	37	13	25	36	19	27	18	31	21
CCGCACTTCCCCGCTT	ref_2817_reverse	6	36	11	13	38	9	39	8	30	6
ATAGGCCTGGGCTTTA	ref_2817_reverse	10	12	12	17	24	5	18	6	26	14
GGATACTCGGAGCGGC	ref_2817_reverse	23	36	27	35	31	24	33	26	32	20
GATGACTACTGGGTGT	ref_2817_reverse	224	300	264	223	298	186	327	190	313	217
CAGGCAAATGTTTCTA	ref_2817_reverse	119	175	144	114	151	137	151	100	169	115
TTCCCTTCCGAAACCC	ref_2817_reverse	63	84	73	47	88	64	88	52	93	41
GGCGAACGTGTCAGAT	ref_2817_reverse	44	60	62	51	71	52	57	38	53	43
TTAATGTCGGCAGATG	ref_2817_reverse	39	34	36	26	37	29	37	29	46	28
CTTTACGTAGCTCTCT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
GCCAAGCCGAATGGTC	ref_2817_reverse	60	65	73	60	110	87	95	48	98	52
CTTGGGATGGCAGAGG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CAAAATAACCATTCGT	ref_2817_reverse	7	12	9	3	11	7	5	6	9	3
CCCATATCATCGCGGA	ref_2817_reverse	12	19	12	10	19	9	22	19	24	13
TTAAGTTTTTCTTACT	ref_2817_reverse	20	29	27	22	31	17	23	22	32	24
ATAAAGGTTACTATAC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TCATCATTATCTATGC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCGCTTTTTTCTG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGCTTTTATGTGG	ref_2817_reverse	42	44	52	48	53	33	50	38	55	36
GCTGACTATTGTATAG	ref_2817_reverse	14	37	19	18	34	17	36	9	24	17
ACATCCGGGGGCGATG	ref_2817_reverse	2	7	6	7	4	3	4	3	5	2
GGTTATGATAAGTAGC	ref_2817_reverse	29	55	54	39	54	41	75	36	58	29
TGGTTCCAAAGCGCAG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ACTCCCGGTTCCCTGA	ref_2817_reverse	12	14	19	11	20	15	20	15	11	15
GGGCGTGCCTTCTAAT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTGGAATCAAGGG	ref_2817_reverse	56	98	68	76	104	65	106	57	102	75
CCTCCACAGTATTTCT	ref_2817_reverse	1	22	5	3	16	3	9	6	17	4
TGAGCTTGTATAGATC	ref_2817_reverse	71	87	59	81	81	59	94	56	90	63
TATGTGGTTTATAATT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCGCCTAATGTTT	ref_2817_reverse	25	63	54	40	50	41	68	41	64	27
TTCTTTTTACATTGTT	ref_2817_reverse	36	56	43	44	81	36	73	37	71	37
TATGCCTGGATCACTT	ref_2817_reverse	16	35	28	24	28	19	41	18	31	17
CTCCTGCAATGGTTTC	ref_2817_reverse	5	4	4	6	6	7	5	3	9	10
AGCCTCACGGAAAGTA	ref_2817_reverse	6	7	3	4	6	4	6	3	13	3
GCGTTTTCTTCATTAT	ref_2817_reverse	40	52	31	23	36	26	32	31	40	31
GACGGACTCCAAAGTC	ref_2817_reverse	42	53	36	33	38	38	45	37	37	25
ATACAGTGTTGTCTCT	ref_2817_reverse	14	36	18	26	41	20	38	22	44	24
TAGTTCATTTTCCTTG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATTAGAATGTTTTCGC	ref_2817_reverse	2	7	6	1	5	4	3	8	9	1
ATTAGAGAAGACTACT	ref_2817_reverse	210	310	247	225	340	190	340	216	337	201
TCTCGGTAACATTTAA	ref_2817_reverse	54	90	61	54	73	51	66	39	79	42
CGATGTACGTAGGCTC	ref_2817_reverse	45	62	45	37	49	42	56	33	38	40
ACCAAATTAGTCTCTC	ref_2817_reverse	49	76	41	36	76	45	70	39	72	36
ACCCATCTACTTAGAT	ref_2817_reverse	34	46	41	39	68	39	74	35	63	37
CGTTGAAAGGCAGTTA	ref_2817_reverse	24	47	24	27	24	27	30	18	44	23
CCCCCATTAACCTCTA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTCTCACTTCTT	ref_2817_reverse	8	12	11	11	9	8	16	12	19	11
ATGCGATGATCATAGT	ref_2817_reverse	84	88	76	100	109	71	132	83	121	46
GATCCGCTCCACCTAG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
AACATATCTACCCGGT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGAGGCTTCTGCC	ref_2817_reverse	41	62	41	34	48	33	53	36	68	37
AGTTGGCACGGGCCTG	ref_2817_reverse	33	52	53	35	77	36	49	25	73	36
GTCTTTGCGTGACGAA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
GTGGACTCGCATGCGA	ref_2817_reverse	31	62	40	49	69	31	55	45	65	32
TCCTCGATCAACTGCT	ref_2817_reverse	41	55	49	46	54	26	51	38	67	32
GTCTCACGTTAAGACT	ref_2817_reverse	4	3	1	6	4	5	1	2	4	5
GATGGACTCTCAGTCC	ref_2817_reverse	118	150	149	141	155	157	166	129	156	104
ATTCTTAGGTGTAACC	ref_2817_reverse	4	1	4	6	0	0	3	2	3	2
TGGGCGGGAACTCTCG	ref_2817_reverse	4	12	5	2	9	5	8	4	7	3
GGATGCCATTTGTTCT	ref_2817_reverse	1	2	5	3	3	1	6	1	3	3
CTATGACCCACACTCG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CCAATCAATTGTTCTC	ref_2817_reverse	66	72	64	64	101	56	87	74	92	43
TTCCTTTGCGTCTGAG	ref_2817_reverse	39	53	48	29	72	46	64	44	47	38
TGAGTTTCGTGATTAT	ref_2817_reverse	7	12	9	6	8	9	11	12	17	5
TGCTTCTCTTCGAATT	ref_2817_reverse	19	26	38	27	23	35	28	24	34	21
ACCTTAGCATACCCAC	ref_2817_reverse	46	47	52	38	81	30	58	42	67	45
GGTTCCTGGAGAACAG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATAACTCCGCGCTTGC	ref_2817_reverse	2	0	2	2	5	4	1	3	2	0
GCCTGTCGAAACATAG	ref_2817_reverse	35	66	57	33	76	41	63	37	68	33
ATTTTCCTTTTTCAAG	ref_2817_reverse	0	13	1	13	2	3	5	7	4	1
GGAACAGTTAAGAGGC	ref_2817_reverse	14	46	32	27	35	40	45	19	59	24
AAGTTCACATTGGATC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCCATGGTCATAG	ref_2817_reverse	19	39	18	14	24	13	34	16	36	12
CGGATAATCCCCACAC	ref_2817_reverse	28	37	29	33	32	19	43	24	32	23
GTATAGCCGTAGAGAG	ref_2817_reverse	79	99	73	79	114	85	109	70	108	69
CCCTTACTCGTACCTA	ref_2817_reverse	4	32	4	1	29	5	49	7	29	2
CGAGTCATTGGCACTC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ACGGGCATGTAAATCG	ref_2817_reverse	20	35	30	26	53	29	37	41	34	24
GAGTATCGTGGGTAGT	ref_2817_reverse	5	4	11	3	11	5	11	4	8	3
AACAAGCGCATCTAAA	ref_2817_reverse	16	32	35	24	30	18	39	18	24	12
CCGGCCGTGTTTTCAT	ref_2817_reverse	7	27	8	3	28	8	26	5	32	7
TCTCTCGACCTAGGGT	ref_2817_reverse	8	9	8	15	13	5	14	9	22	15
TATAGTACTTCCGTTA	ref_2817_reverse	0	0	0	0	0	0	1	1	0	0
CGAAACTGGCACACCT	ref_2817_reverse	24	42	32	21	30	24	40	21	40	13
TCCACTTCGACAACAT	ref_2817_reverse	46	52	52	53	77	36	39	35	54	49
GTATCTTACTAAGTGC	ref_2817_reverse	31	46	56	31	50	31	48	26	55	34
TATCGCGATTGGGTCA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTGTCTGTATCAG	ref_2817_reverse	34	55	37	28	67	31	67	34	74	35
TACACGTTCCCCGGGG	ref_2817_reverse	1	20	2	1	23	0	19	0	20	1
TAGTCTTTCAGTGAAA	ref_2817_reverse	23	42	30	29	47	14	39	30	45	19
GGGGTTTAAAATCTGT	ref_2817_reverse	81	115	100	82	99	72	118	63	139	77
GTTTTTCACGTAACGG	ref_2817_reverse	3	9	8	6	10	5	9	7	6	5
GGAAAGTATACTAGTA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTATCATTGTGCT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CATTACTGAGAGGCCA	ref_2817_reverse	6	17	6	8	18	8	14	7	3	9
GTAGGACTTAAGGTAC	ref_2817_reverse	38	44	49	26	42	32	42	32	43	28
GGAAGCACGTAGTAGT	ref_2817_reverse	7	13	15	8	15	11	15	16	23	14
CCCCAGTCCTATTCTG	ref_2817_reverse	12	4	8	4	10	9	18	10	9	5
ACATCATATGTGTGCC	ref_2817_reverse	40	66	54	46	59	46	70	39	60	39
TAACCTGGTTCTCTAT	ref_2817_reverse	19	14	20	16	25	15	16	17	17	14
ATGCGATTATTTCGGT	ref_2817_reverse	9	7	9	4	13	9	12	5	12	12
ATTAGAGAAGACTACA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ACAACCATCCTACTCC	ref_2817_reverse	35	88	33	38	83	36	90	32	70	45
CAGTTAGATCGTGAAA	ref_2817_reverse	10	16	15	13	14	13	36	14	21	12
GGATCTATCTGTCTGA	ref_2817_reverse	32	56	58	34	44	34	49	35	59	30
CACTGCGCTGTAAATA	ref_2817_reverse	8	8	7	13	19	7	9	11	15	9
ACTGTGTTAAAATGAC	ref_2817_reverse	23	39	19	15	16	15	24	21	40	20
TCAGCTCCCCATCTTC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CGTCAAGTCAGGGTGT	ref_2817_reverse	6	14	10	10	8	12	13	5	9	6
TAAATGCCGCGCTCCT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGTGCGCCTGTG	ref_2817_reverse	16	15	19	15	17	9	27	15	15	7
TAGTGTCAATCACATT	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTGACTGTTATAG	ref_2817_reverse	99	166	120	93	136	109	165	92	162	96
TGCGTGCACCTAGATG	ref_2817_reverse	33	42	30	17	28	21	40	25	34	26
CTGGAGACGTTTCGAG	ref_2817_reverse	15	28	19	21	32	16	37	12	18	15
GCTGGTTATATGCCTG	ref_2817_reverse	9	16	11	9	14	9	16	7	13	13
GTAGTATCAAAAGGAT	ref_2817_reverse	3	6	7	7	5	5	8	5	9	3
TGCGTCGCATCTCCAT	ref_2817_reverse	14	19	21	30	18	10	32	6	18	10
TTTCTCTTAATTAGGA	ref_2817_reverse	13	9	8	14	6	8	9	4	9	8
CAGGAAATTCAGGGTA	ref_2817_reverse	33	61	45	40	42	33	53	45	52	32
TTGCAAGAGTACAAGC	ref_2817_reverse	16	37	23	23	30	23	32	26	31	11
GTAAGGCCATTCTTTG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CACTAGACCAGGAACT	ref_2817_reverse	3	1	1	0	0	0	4	2	0	1
CTCAGCCCACAATGGT	ref_2817_reverse	18	34	23	26	35	18	35	25	29	15
TACGAGTCTTTCCAAT	ref_2817_reverse	15	13	19	17	29	15	19	13	26	18
AAAAATATGGGTCAGC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGGGTTATGTAAA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TATTTCGACGGCGTAC	ref_2817_reverse	15	24	27	15	23	11	26	15	24	8
AATCGATAACTTAGTC	ref_2817_reverse	10	15	19	20	19	6	13	12	14	7
TCTGTTCTAGTAGCAC	ref_2817_reverse	38	58	64	37	56	45	66	39	86	31
GCTAACCTCGTCTCCT	ref_2817_reverse	26	77	27	25	78	26	62	17	58	21
AAAGCCTAATGGATTA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
CATACGCTTTCGGGGT	ref_2817_reverse	9	12	11	5	12	6	4	7	14	10
CGTTCTGCTTCGTGGC	ref_2817_reverse	14	25	16	23	20	14	23	19	23	10
GTGGTAGGCGCATAAC	ref_2817_reverse	181	256	195	170	266	198	285	159	259	139
AGGTCGTTGTACCTAC	ref_2817_reverse	13	57	10	7	61	13	67	7	54	10
TATACAGTCCATTGGA	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
GAGATTTTGACCTTAA	ref_2817_reverse	9	12	16	9	13	16	16	10	13	12
TACAATTTCACTCTAG	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTCAATTCCTATT	ref_2817_reverse	15	24	30	23	30	23	43	18	31	16
TACTGTCATCATCTGC	ref_2817_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCCCCCTACCTAT	ref_2817_reverse	33	55	44	25	65	24	67	20	46	23
GTGCGGGATGGGTTGC	ref_2817_reverse	66	92	85	84	79	61	105	63	91	66
ATGAGTACCTTCACTA	ref_2817_reverse	15	21	9	8	22	16	18	14	22	15
CTGCGTCCTGTTAGCC	ref_2817_reverse	4	3	5	3	4	7	10	6	10	3
CCTACTTTGTACGTTC	alt_5626_new	20	50	22	16	56	14	45	16	34	14
TAGTGGCCTCCGGGGC	alt_5626_new	6	10	2	4	5	3	5	3	3	9
CTATCTATCTCTAGGG	alt_5626_new	42	54	34	42	43	26	63	21	68	30
TTTCGATGTGGTCCGC	alt_5626_new	38	59	42	30	57	56	56	40	63	32
TATATTTGGATACTTT	alt_5626_new	22	20	14	9	28	14	17	12	28	16
CAATTATTTCCCTTGA	alt_5626_new	2	4	0	0	0	1	3	1	0	2
CGGTCGGAGACATCAG	alt_5626_new	21	23	19	20	24	15	24	16	24	11
CCATTTTTAGGTAAAT	alt_5626_new	25	21	24	19	41	19	31	16	27	25
TAGCAAACTCTGAGGT	alt_5626_new	2	7	5	4	4	2	5	1	5	3
TACGAACGGAAATATC	alt_5626_new	0	0	0	0	0	0	0	0	0	0
GCCATTTTTATATTTT	alt_5626_new	56	60	66	41	46	61	44	60	44	64
GCTATACCCCACTGCG	alt_5626_new	16	11	14	11	17	11	24	6	17	7
TAAGTTGGCGGTTTAG	alt_5626_new	14	27	14	14	19	21	18	11	14	5
CCTGGATTACCGGTGA	alt_5626_new	9	26	17	9	34	13	35	17	55	12
GTGGATTTCGAAAAGG	alt_5626_new	14	22	15	10	17	9	16	8	30	11
TTGGAGTTCGTGCGTA	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TGTTACGGCATGCTAA	alt_5626_new	4	9	4	11	6	8	20	4	17	7
TGTGGTCGAGGGCAGC	alt_5626_new	0	0	0	0	0	0	0	0	0	0
ATGATGCCTACTGCCG	alt_5626_new	15	11	15	9	17	16	20	12	14	7
GTTCGGACCGATTTTA	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TTCTGAAGAGTAGGCC	alt_5626_new	39	80	57	38	68	37	67	54	83	43
ACGTATTTTCTGGGAC	alt_5626_new	64	108	66	65	97	59	96	67	99	75
TTGAGGGGTTCGATGG	alt_5626_new	10	3	9	3	9	9	17	4	14	9
ACGCGGGATTTGTTAA	alt_5626_new	8	2	9	9	7	3	9	5	7	9
TAATGTTACGCTTATT	alt_5626_new	20	30	23	21	43	17	35	14	50	27
TCTCTAAACAGTTTCC	alt_5626_new	0	0	0	0	0	0	0	0	0	0
CACCAGGTAGCGCCAC	alt_5626_new	1	9	6	7	11	3	10	6	11	1
CTGCATCAGCTATCTG	alt_5626_new	23	35	42	27	50	22	38	24	36	25
ACATATAGGGGTGTTT	alt_5626_new	0	0	0	0	0	0	0	0	0	0
CTGGCTGTGGCATGGC	alt_5626_new	0	25	10	4	18	5	24	2	26	5
GCTATCGTAAGAATGC	alt_5626_new	4	7	3	5	5	2	0	5	4	1
GGATGATTCTCGATAA	alt_5626_new	11	24	15	22	21	18	21	12	19	11
GCCTGTTGTCCCTAGA	alt_5626_new	17	19	13	6	23	13	12	12	33	11
CTCGGTTCGAATGCAG	alt_5626_new	38	73	38	31	43	36	46	31	64	34
TACCCATTCTGGTGCA	alt_5626_new	11	26	16	20	48	13	41	16	43	19
AACATTCTGCAGTACT	alt_5626_new	11	15	8	12	14	11	15	4	21	10
TGGGTTCGACCTCAAC	alt_5626_new	6	14	16	5	8	13	11	9	14	6
CGCCATGTAAACCGGA	alt_5626_new	75	97	80	59	93	49	95	72	102	60
CGCTAGTTCGGCGACG	alt_5626_new	20	24	23	19	28	16	34	15	36	24
TATATCTAGTGCAAAA	alt_5626_new	14	18	12	9	12	8	24	6	16	8
TCATGGTGATATTAGT	alt_5626_new	24	44	44	32	65	26	55	28	55	31
GTTTCACCTTCCATTC	alt_5626_new	47	53	57	46	77	45	57	36	102	31
CTGCGTTCCCCATGGT	alt_5626_new	45	71	56	38	64	43	87	35	80	51
GATGGCGAGATGTCAG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TGTTATTAGCATTCAG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
ACAATCCAATGGTAAG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
ACGCTTTAACTCAGGT	alt_5626_new	20	29	15	12	28	11	37	12	20	21
TTTTAAAGGCCGTGCC	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TAGCACGCGGGCTTAT	alt_5626_new	33	56	38	32	69	31	67	30	52	42
CATGAGGTCTGGCTTA	alt_5626_new	85	116	90	83	125	69	131	76	109	68
AGCTTTGAGCAGAACC	alt_5626_new	0	0	0	0	0	0	0	0	0	0
GTTACAGCATTTGTTA	alt_5626_new	10	16	13	6	13	10	7	10	11	10
TATTACAGCACATTCG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TATATGTTTTCTTGCT	alt_5626_new	2	2	7	4	4	3	8	4	15	6
TCACATTAGGCCGGCA	alt_5626_new	31	40	37	33	59	28	53	35	51	39
TTCGCTACCTCCCGGT	alt_5626_new	7	11	7	11	8	7	12	10	8	4
TCCATTCTCTTCCTAC	alt_5626_new	21	58	30	29	52	23	58	31	49	35
GCTTTGTTCTTTACCC	alt_5626_new	33	40	42	32	40	32	49	16	48	21
GACTTTTTTGCAGTAA	alt_5626_new	0	0	0	0	0	0	0	0	0	0
CCAATTGCCTTAATTG	alt_5626_new	15	22	14	14	22	23	24	12	28	7
ACACCTATTTATGCGA	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TAATTAGGTTATAATT	alt_5626_new	20	33	26	26	27	27	43	23	29	25
ATCCTTTCACGGCTGA	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TCCGTGTGTCCTTATG	alt_5626_new	52	72	68	35	71	31	85	39	86	36
GCCGCGGGCCACTTGT	alt_5626_new	54	109	85	70	86	58	119	46	121	68
AAGGCTGGACTAGCCT	alt_5626_new	0	0	0	0	0	0	0	0	0	0
ACCTCTTACGGTATAT	alt_5626_new	0	0	0	0	0	0	0	0	0	0
ATGCTGATGGTTGGTT	alt_5626_new	35	58	46	32	49	32	61	39	47	25
AGATGGTGTATGTTCA	alt_5626_new	12	27	24	29	41	15	35	16	20	20
GTAGATAAGTGGAGAT	alt_5626_new	4	3	4	3	3	6	11	4	4	6
ACTGCGGTATAAGCTG	alt_5626_new	65	107	80	52	102	58	104	53	90	49
CGGTTTAGGAACGAAC	alt_5626_new	3	10	2	13	13	2	8	6	8	12
TTTTAACGACTGTAAA	alt_5626_new	131	193	132	99	123	116	192	81	177	71
CAAGTCTGATTTCTTC	alt_5626_new	2	7	5	3	12	11	12	5	9	1
CCGATCCGTTCAACTG	alt_5626_new	124	303	138	93	293	117	289	144	313	97
ATATTGTCTCACAGCC	alt_5626_new	2	7	9	5	6	3	6	2	9	5
CTTTCAAACTTGCATG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TGGGTGTTATCTGTGA	alt_5626_new	19	28	28	13	40	25	33	21	28	18
TAGGTACATTCCCGGC	alt_5626_new	0	0	0	0	0	0	0	0	0	0
TATGGTTGTGGCAAAT	alt_5626_new	37	52	28	27	43	30	72	23	63	29
GTCCAGTTTCTGGGGG	alt_5626_new	10	5	15	7	19	6	32	9	27	11
AGTGCTGGCTGTCATG	alt_5626_new	46	79	61	39	84	44	78	52	94	35
CCGAGACGATGCATCC	alt_5626_new	11	34	11	8	21	6	32	7	26	11
GATTTCGATCCGGATG	alt_5626_new	8	17	13	9	6	9	6	7	8	6
GTATGGTGTTAACTTA	alt_5626_new	18	35	22	14	19	18	36	12	31	28
TGTGCTGCCGTGTCCC	alt_5626_new	19	28	16	26	27	29	24	19	30	24
CTTGTGGCTCGCTATG	alt_5626_new	11	35	14	18	47	14	32	18	46	11
CCGGAATTTTCGGAAT	alt_5626_new	10	51	13	8	34	12	38	11	34	7
AAGGTTTACCTTATAA	alt_5626_new	9	26	17	17	30	14	24	11	17	14
TATCATGCTTGGCCTG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
CGCTGCCTTCGTTTAA	alt_5626_new	0	0	0	0	0	0	0	0	0	0
CGCCATTTCGGTTTGG	alt_5626_new	8	7	11	0	5	7	4	3	9	3
TTTGCTTGCAGCGGTA	alt_5626_new	15	31	13	13	10	14	17	18	21	17
ATAATGTCCGGGCACT	alt_5626_new	33	36	44	32	54	36	59	39	50	15
TCCTTCCATCCTCATT	alt_5626_new	27	35	33	27	41	14	31	25	37	18
ACCATCAAAATCGAAT	alt_5626_new	2	0	0	1	1	3	5	1	1	1
TTGTGTTTTGGGTTAT	alt_5626_new	0	0	0	0	0	0	0	0	0	0
GGGCGGTGAAAACAAG	alt_5626_new	131	163	161	140	175	115	208	108	212	99
TTCGCCAACCCGCACG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
AGCCGTCCTCGCTTGG	alt_5626_new	10	20	10	7	13	7	10	3	13	6
GTCACCCGGTCCTCAT	alt_5626_new	46	74	56	52	81	39	74	42	82	46
CTTGCGGTCCCATTAG	alt_5626_new	0	0	0	0	0	0	0	0	0	0
GACAAGTAAGAGCATA	alt_5626_new	22	18	28	25	27	16	15	14	18	13
GCGACATATTAATAAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGATCATGGTTAG	alt_1269_fdr	16	16	18	25	22	19	8	26	31	22
CCCATTGTGCCATGGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTGCGTTTCGCCA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGTAAGGGACACCCTA	alt_1269_fdr	13	13	8	5	2	3	7	3	9	6
GGTGGTCAGGTAAATG	alt_1269_fdr	55	61	100	92	61	65	54	63	60	66
CACCGAAAGTGTATGA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GATTGTGTGGTGGCAA	alt_1269_fdr	12	14	26	22	12	17	14	19	24	6
TGATATATCGGCCGGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCTGACTCCCTAC	alt_1269_fdr	27	30	39	41	27	40	37	24	30	23
ACTGTCGGCATCCGCT	alt_1269_fdr	29	30	39	32	33	32	31	27	34	31
TTAGGGCCCCTCCATT	alt_1269_fdr	36	45	44	29	34	34	55	38	34	41
GCATTTAGAACCGGGA	alt_1269_fdr	43	30	56	54	21	37	34	45	27	34
TTCCTTGAAGTACACA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTGACTGGTCGCA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCTCGAAATTACT	alt_1269_fdr	27	19	39	33	25	24	21	32	18	19
TTTATACATGGTTTCC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTCACGTTATTACGGA	alt_1269_fdr	23	17	19	31	13	12	26	23	18	24
GCCCTATTTGCTCCAC	alt_1269_fdr	12	5	7	4	7	5	8	12	7	2
AGCCGAGTGTTGCGTG	alt_1269_fdr	27	22	43	35	30	23	27	27	30	31
AGGGCGTATGCTTCGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTACACTTTTCCCTGG	alt_1269_fdr	0	9	1	1	7	0	4	1	5	3
GTGGATTTGCTTCAAG	alt_1269_fdr	54	49	64	48	57	52	55	63	62	37
ACATTCAATCTTGTCA	alt_1269_fdr	14	23	26	16	22	18	23	8	17	15
CCCACAGGGTTAATTC	alt_1269_fdr	89	100	111	108	99	104	112	86	94	82
CATTTGATGTTCTCTA	alt_1269_fdr	11	11	13	12	17	3	12	17	6	8
TGACGAAGCTTCTGAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
ATATAGGTCGTACGGT	alt_1269_fdr	18	10	19	28	23	15	12	21	15	15
GTGCACTTGGACAGGG	alt_1269_fdr	12	10	12	9	6	12	4	15	14	15
CTGCTAATCTTGGGAA	alt_1269_fdr	18	12	11	8	3	14	4	11	16	19
GGAAGCTGTCTCATAC	alt_1269_fdr	33	19	31	28	24	36	24	23	16	33
TCGCTCACCTTGGGAT	alt_1269_fdr	22	28	46	31	25	22	22	24	39	27
AGACTCCTGTTGCGAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGGAGCATTACAT	alt_1269_fdr	29	20	25	33	18	26	22	26	28	24
GTCCTGTCATAATGGC	alt_1269_fdr	41	30	47	41	45	42	56	30	38	61
AATGTAAGTTGCCCTA	alt_1269_fdr	39	50	59	44	52	49	51	45	53	49
ATCACAAGTTACAGTG	alt_1269_fdr	138	108	125	147	111	102	103	114	95	103
TTACCTCAGTGTAAAC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCCGATTACGGTC	alt_1269_fdr	143	201	186	172	238	138	199	144	234	146
AGATCGCAGATTCTTT	alt_1269_fdr	35	21	32	34	22	21	22	29	22	31
GTAGCGATCCTGGGCG	alt_1269_fdr	9	9	6	7	6	11	12	9	12	6
ACAGTAATCCGCTGCA	alt_1269_fdr	30	20	32	47	32	22	38	23	27	15
CTTGGGTCCCCCATGG	alt_1269_fdr	23	9	18	14	4	23	9	19	15	16
GGCTCTGTGAATTCTA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTTCGTGACCGTC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TACAGGCCCAGTTGTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTGGCGTTTGCTT	alt_1269_fdr	11	3	7	2	2	3	13	8	3	10
TTCTCAACGTAGACGG	alt_1269_fdr	69	47	64	48	44	63	42	47	48	65
TAACCATGATTGAGAT	alt_1269_fdr	22	22	36	36	22	24	21	23	18	21
GTTATCCTACTATTTT	alt_1269_fdr	116	77	172	116	114	109	117	113	94	117
CGTCGCGTTAAACTGA	alt_1269_fdr	4	0	1	0	3	0	0	2	2	1
TGGTCGCGGTGCTATT	alt_1269_fdr	15	7	10	11	13	12	12	12	16	9
AGTCAAGTCAGCGCGC	alt_1269_fdr	69	79	85	103	71	61	70	82	49	53
TAGTCCTTCATTCTGC	alt_1269_fdr	35	26	59	34	40	36	33	33	39	14
AAGTCAGATTTCGTGC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTTCCTAAGTGTT	alt_1269_fdr	6	9	11	11	7	11	6	14	10	9
TGGTAACTCATTGCGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTAGACCCTGAGCTTC	alt_1269_fdr	68	63	62	76	52	64	69	58	52	53
TTCTAGGCGAGAACTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTCGCCACTAGGA	alt_1269_fdr	15	21	23	29	15	20	19	18	37	26
TCCGCATCTCTATCTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGCCGTGTATTTG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGCAATGGTGGTGTCA	alt_1269_fdr	18	12	27	20	4	14	5	14	12	10
AATACATAGATCGCGA	alt_1269_fdr	64	53	107	96	62	67	73	72	67	71
CTAGACTTTGTGGTCG	alt_1269_fdr	27	29	51	29	45	41	31	38	36	31
TAAAACTTCTGATTAC	alt_1269_fdr	22	16	20	15	13	23	8	18	26	14
TTCGCCTACTAAAATC	alt_1269_fdr	19	16	22	18	16	10	4	16	13	21
TGTTACCGGGTCCCAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTAGCCTCTCAAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGGGCCATTAGTA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GGATCTCTCTCGAACC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTACACAGGATTATGT	alt_1269_fdr	4	4	2	4	4	6	2	6	4	6
GGTGGAAGGTCTAATC	alt_1269_fdr	20	14	39	23	27	38	28	27	28	24
GCCATATGATAATCCA	alt_1269_fdr	7	4	5	12	17	6	7	15	5	5
CGATTGGTTAGGGTCT	alt_1269_fdr	29	51	44	54	34	24	38	39	30	43
GCTCACTGATTCCTTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCCATTATCATAGTA	alt_1269_fdr	19	17	29	17	36	29	21	33	20	23
GGTAAATGCGCACCTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGACCTTTTGCGTAAA	alt_1269_fdr	11	13	21	11	14	15	14	15	23	13
GGGGGCAGTATCACCA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GATTCCTTCCGTGCCT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTGGTACCATAA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGTAAGCCCAAGTCCG	alt_1269_fdr	25	15	32	28	29	29	27	23	22	20
CTAGTTAAGTTCAGTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AAAACAACCCTTATTC	alt_1269_fdr	12	10	21	9	17	10	20	14	12	18
CCGGTTCTCACCTCTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGGGCGCCCAAA	alt_1269_fdr	18	5	9	14	17	21	13	12	22	16
CGAGTGCGTTCGATCG	alt_1269_fdr	7	2	10	9	5	7	9	4	1	3
CTGCGTCAGAAACCGG	alt_1269_fdr	259	237	347	291	248	311	259	278	273	245
TAGTATATTATCTCGT	alt_1269_fdr	1	3	1	1	3	2	1	1	0	4
AGTTCCAGGTAGGTTT	alt_1269_fdr	1	0	0	0	0	0	0	0	0	0
TTCAATACGTGTAGCA	alt_1269_fdr	21	18	27	17	20	29	15	17	22	22
CAGCGATTCGACTCGG	alt_1269_fdr	29	22	40	21	29	22	19	21	21	23
ACGGGTGCAGCTGTTA	alt_1269_fdr	23	33	50	30	40	38	46	28	31	24
GTTTGCGCATATCACC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGACTTTGGACCA	alt_1269_fdr	67	76	101	63	87	80	79	67	105	60
AATCCACACGATCAAC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGTCACGATCGGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
ACACCATGCGCAATAG	alt_1269_fdr	16	25	28	25	17	20	21	28	28	20
CCTATGCCTTGGTTTA	alt_1269_fdr	17	22	22	25	28	23	34	19	28	19
ATGTTTTGGTGACTCG	alt_1269_fdr	0	1	3	0	0	0	0	0	0	1
TTTTCGTCTGTGGTAG	alt_1269_fdr	92	79	98	111	81	85	106	80	101	81
GCACGGGTAATGATTA	alt_1269_fdr	56	51	75	65	53	48	52	49	53	48
TCTGCGAGGTTTGTGA	alt_1269_fdr	23	17	20	27	20	11	12	24	16	24
TGGTCTGCCCGTGTAA	alt_1269_fdr	27	29	33	28	22	18	31	16	27	14
CATCGTTCTCGGTGGG	alt_1269_fdr	45	27	47	58	27	30	36	46	31	36
GTTAACCAGTATACGC	alt_1269_fdr	38	46	50	41	48	42	48	30	50	44
AACTTACTGGGTTCGA	alt_1269_fdr	30	16	29	27	27	29	34	26	21	28
TCGACCGCTGTTTTAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTCACGTCCTTTCTCA	alt_1269_fdr	7	7	8	11	14	4	4	7	17	9
GATCACGTCTGTTACA	alt_1269_fdr	3	3	4	2	2	0	0	3	2	0
CAAGGACGTTGAGATT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTGGTCTGGTGCC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCTCTATGCCATC	alt_1269_fdr	15	15	20	19	18	12	13	15	15	13
CGTCTGCGCCTGACAT	alt_1269_fdr	23	18	30	22	12	22	22	14	22	15
CTGGTTGTGGTAAGTA	alt_1269_fdr	31	29	37	17	20	29	29	37	32	23
CGGACCAGGGGCCTCA	alt_1269_fdr	8	7	10	11	11	3	4	9	12	10
CTTGTTAGTGGTTCGT	alt_1269_fdr	269	240	329	311	251	275	268	250	297	237
TAGTTTCCGCTCTAAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGAAACCGTCTCAGAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGTCCGGTTTGTG	alt_1269_fdr	13	5	11	6	12	18	5	7	8	12
TCTGGCGGCTCGTGAT	alt_1269_fdr	13	15	27	16	17	17	16	10	15	18
TGTGGCTTCCGGGTTA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTGCATAGATAGA	alt_1269_fdr	12	18	14	12	12	19	7	5	6	14
CAGACTTAGGACCCTG	alt_1269_fdr	56	45	69	54	58	49	70	48	77	40
CCTACTAGAGCCGTGG	alt_1269_fdr	54	56	49	46	41	38	60	38	46	41
TACTGTCTTTGAGCCT	alt_1269_fdr	4	1	2	1	4	2	3	4	3	2
GCCCACATAATCTTTA	alt_1269_fdr	21	14	56	43	22	33	36	26	27	27
AGTTAAATTTATCACA	alt_1269_fdr	43	43	77	60	52	39	45	56	55	45
AGACCTCTTCCAATTA	alt_1269_fdr	26	12	26	25	15	14	18	19	16	24
AGTCCTCCTAATCTTA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTTACTGCATATGCAC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGTTGAATCTTAGGCA	alt_1269_fdr	7	6	7	11	5	12	6	15	7	8
AATTCTTTGGGCCTTC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTATCTGGAGCCACCC	alt_1269_fdr	2	6	2	5	1	2	0	3	1	1
TGGAAGGTTTCATGGT	alt_1269_fdr	4	5	2	4	2	3	2	6	7	5
GCAGTCCCAGTTTACC	alt_1269_fdr	77	73	71	68	67	42	61	67	62	51
GGCGGATCACGTCATA	alt_1269_fdr	11	11	28	15	13	16	9	13	23	19
CAACAGAAGGCCACTC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTTGCGTCACTAT	alt_1269_fdr	41	51	69	45	49	45	56	37	55	33
TTGTACCTTATCTAGC	alt_1269_fdr	56	44	78	81	74	58	70	70	60	67
TATATCCCTTTGGCCC	alt_1269_fdr	10	6	10	11	16	16	17	14	12	12
GTATCGCACTCCAGCC	alt_1269_fdr	24	38	25	36	45	30	33	28	30	19
TTAACTGCTGTCTGGC	alt_1269_fdr	47	36	44	45	51	45	41	40	40	45
GCAACCTCCGACGGGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CCAACATACTCACTGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGTCTTTAGGTTG	alt_1269_fdr	46	42	50	44	52	41	34	30	39	42
AGAAAAATGTTAACCT	alt_1269_fdr	7	9	14	11	13	11	5	11	11	4
TCCTGTTTCGTTCATC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTATCCCTATCATTTT	alt_1269_fdr	19	25	21	16	16	15	15	12	14	14
GCGCCTCGTCGTATTA	alt_1269_fdr	85	87	120	88	101	82	92	95	116	100
CCCGCATGAAGGTTAA	alt_1269_fdr	0	3	0	1	2	1	3	1	4	1
CTATTAAATTCCCTGG	alt_1269_fdr	5	6	9	6	3	9	3	4	7	4
TCTTATTTTTAGCCTC	alt_1269_fdr	8	5	8	7	6	9	4	3	3	6
TCGTTCTCGGGCTTAA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGACGTGGGCGGCGTA	alt_1269_fdr	18	20	36	27	18	21	17	22	18	20
ATATGTTTTATTAGCG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TAGCAGCCATGCCTCC	alt_1269_fdr	15	16	22	27	19	21	24	22	19	22
CTGGTTCAATATACCC	alt_1269_fdr	43	45	62	32	43	34	41	36	42	20
TACTGGTTAAGTCATT	alt_1269_fdr	269	274	362	356	272	267	296	278	302	273
CTATTGTATTTATTTA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGCTTCATTGGAC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CTACTATCCAATACAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCGGTACTGTTGG	alt_1269_fdr	6	10	21	12	25	18	14	17	22	14
ATGACGCTTCTCTCCT	alt_1269_fdr	20	15	16	21	22	18	14	19	18	12
TATCATGCGGCCCATT	alt_1269_fdr	6	11	14	10	14	8	6	13	8	7
GAACATTTACTATATT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GCATGGAGAACAGACT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGGATGTTCCTGC	alt_1269_fdr	10	8	18	10	6	8	7	10	14	10
GTACCTGCTTGTTCGA	alt_1269_fdr	11	7	13	8	6	6	6	8	7	6
TAACCTAGTAAGTTGC	alt_1269_fdr	48	50	47	45	44	30	46	43	59	40
CATAGTTCCCAATGGG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAATTGCGCAAAT	alt_1269_fdr	16	20	32	20	17	23	16	19	25	15
TATTTAGTTGGCTCAT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCGGTTAATTCCA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCAACTTTTGTAG	alt_1269_fdr	250	245	283	252	238	219	244	237	247	192
CGAATTGCGTTGAAAA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGGCCCTACGACA	alt_1269_fdr	25	14	31	24	19	21	19	32	29	21
ATCCCCAAGTCTCTCC	alt_1269_fdr	4	6	4	1	6	3	3	2	7	2
CGCTAATGTGGGGTAG	alt_1269_fdr	59	65	86	71	57	63	82	66	62	67
GCCCGGATACTCTTTA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCCAACAAAGGTT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCGCCCAGTGGAG	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCACGTGTGAAACCA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGACGTTAGCTTCTTG	alt_1269_fdr	15	11	26	9	9	4	12	17	16	9
ATAACTGGGTCCATTT	alt_1269_fdr	6	5	11	9	0	4	10	11	6	6
TACTTTGCCATGACGC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTCTCTCCACGAA	alt_1269_fdr	7	7	3	2	1	3	13	4	1	5
CAGTATCCTTAGAGCA	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CGCGATCTGATTAGAA	alt_1269_fdr	27	18	31	14	12	11	18	20	22	18
TTTCATTAAAGTCAGG	alt_1269_fdr	6	2	4	3	8	6	3	3	2	3
GTGGGGGTTACATGGC	alt_1269_fdr	20	10	16	20	19	17	14	20	9	14
TCCTGCCTGGGGGGTT	alt_1269_fdr	24	26	22	23	15	26	23	28	21	19
CTATACGATTCCCCCG	alt_1269_fdr	3	3	1	2	4	0	10	3	14	2
TTGTAGGATTCTTTTA	alt_1269_fdr	17	11	18	14	21	15	18	14	22	13
ATGGTCCCTGCAGGGT	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTGGTGTTATAGA	alt_1269_fdr	45	41	53	52	38	50	48	45	42	61
CCTTCTGATTTGATTG	alt_1269_fdr	3	2	5	2	7	1	8	6	6	1
TCATTTAGTGGAACTC	alt_1269_fdr	13	21	23	15	21	23	16	13	14	20
TTACCTGTATCCCTAA	alt_1269_fdr	0	0	1	0	2	0	0	0	4	0
AGGCTCAACCATATCC	alt_1269_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTCCCCAAGACAT	alt_1269_fdr	1	12	5	5	3	1	16	4	10	1
GTTAGCGGTGTTTGCG	alt_1269_fdr	51	54	68	60	44	45	46	44	68	50
TTCAGAACTCTAGGTC	alt_6032_new	30	8	40	33	17	19	13	27	12	22
CCGTTAGAAGGTTCTC	alt_6032_new	24	10	51	50	19	36	17	30	13	36
TCGGGACAGCGGGTGT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CCAGCGAGCACCGCAT	alt_6032_new	63	72	91	76	96	67	47	73	56	70
CTAGGTTTTTGCACGC	alt_6032_new	110	46	160	118	46	103	63	92	81	92
CGGTGCGATGTGCAAA	alt_6032_new	99	40	97	103	50	74	47	84	45	85
GTACCCGTGGCGGTTG	alt_6032_new	46	19	54	52	38	36	37	44	24	45
TGATTTGGCCACTTCG	alt_6032_new	137	61	203	166	73	149	59	120	62	133
CAACTTCTCTGTCCGG	alt_6032_new	22	18	27	17	7	24	14	25	11	26
GTCACCAGAGCCTCTT	alt_6032_new	56	30	94	70	25	76	37	76	41	65
TCCTTGACGGTTCAAT	alt_6032_new	21	14	33	30	14	22	17	21	12	23
TTCAGACTCTCCTAGT	alt_6032_new	112	61	140	105	45	123	54	108	54	100
AGAGCGCGAAGTGTAT	alt_6032_new	150	50	181	130	37	111	51	129	56	113
CGGCTCCGGTCTTACT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
AAGCAAGTTGGGATTC	alt_6032_new	62	22	68	74	14	43	34	59	12	70
GATAAGTGCCTTCTTT	alt_6032_new	149	59	153	176	54	142	53	139	52	124
GCTCACTCCGTATCGG	alt_6032_new	140	51	192	179	61	114	66	122	66	136
ACTATACGTTATTGAG	alt_6032_new	43	18	61	52	21	46	21	38	16	41
TACATCGTGTTCAGTA	alt_6032_new	123	50	155	114	52	101	50	110	52	93
GTGTAACGAGTGAGAC	alt_6032_new	130	70	176	152	55	132	68	149	77	114
ATGTACCATGGTAATT	alt_6032_new	840	350	1050	908	412	814	403	842	393	782
TTTCACAGGGCATCCT	alt_6032_new	7	1	4	3	5	5	0	3	3	1
TTGGTTTAGCGCCTCG	alt_6032_new	79	31	139	99	32	92	42	82	43	74
CTAATGTGGCGTTTCC	alt_6032_new	29	19	22	38	14	28	15	31	10	22
TTTTGTGGGTACCAGT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CGTCCCATTACAAATC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CACTTCCGTTGGGTGT	alt_6032_new	6	3	7	7	10	13	8	8	11	5
ACTTATGCGCGTCTTG	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TCCGGCATATCCCTAA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TAGTGCGATATTTGCA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
ACTTGTAGGGCATAGC	alt_6032_new	157	53	160	143	42	137	62	111	85	120
TTTGTCGCTGCACTTG	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TCTCAGCAGTAATGTT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TTCGGTCTCTGTGTTC	alt_6032_new	158	68	160	139	63	136	65	149	80	127
TAACGCCCGAAATCAC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
ATTAGTACTATTGATG	alt_6032_new	58	29	80	67	24	61	31	56	35	38
AGGTCTCGCCCACGGC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CAGGAATGATGACGAG	alt_6032_new	119	50	150	137	47	136	50	94	68	119
GACTCCAACTTAATCC	alt_6032_new	512	264	678	590	221	505	241	531	238	464
TTCACGTCCCGATGAA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TTTCAGGTCCGATCGG	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TTGGATGATTCTCAAT	alt_6032_new	50	23	65	58	20	57	32	47	22	32
TCAGGAATAATTGTTA	alt_6032_new	18	7	17	17	4	19	1	13	5	6
ACCGGGTATCAATCCT	alt_6032_new	10	6	8	23	11	9	6	11	11	6
TCCTATATACTAGCCC	alt_6032_new	21	14	24	23	10	25	16	31	8	22
TGTCGGCTGAACACTT	alt_6032_new	79	29	106	100	43	54	32	90	44	73
CCTTTATTTCTGCCTG	alt_6032_new	27	15	46	36	11	31	10	45	17	21
GTCAGATTGTATGCAG	alt_6032_new	0	0	0	0	0	0	0	0	0	0
ACGATGGCTGAGTCGT	alt_6032_new	87	34	120	77	33	79	27	87	27	78
TTAGATGGCATGTTTG	alt_6032_new	100	50	106	114	41	102	43	110	48	82
ATGGGCGAAACTAACG	alt_6032_new	895	377	1159	1079	404	913	366	977	375	863
ATAAAATCAAGTTTGC	alt_6032_new	100	46	117	116	53	93	41	88	50	80
TCCGTCCTTCGCTTTT	alt_6032_new	126	36	161	142	50	124	43	135	56	118
TAATATCCGCCCGCCT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CACGGCCTTAGGGGTG	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CATCAGTTCGGAGGGT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TGAATTATGCCAACAT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CTTACTGATAGCACGG	alt_6032_new	67	32	120	88	43	74	25	59	23	64
CACTGTATGCGAACAT	alt_6032_new	91	49	121	127	40	87	47	111	36	75
TGTCGCCCATCTCGCC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TACGCGGCTGTTCAGC	alt_6032_new	47	16	59	55	17	34	19	37	22	38
AAATGCGTTCGATTTC	alt_6032_new	4	1	10	1	0	2	2	2	2	0
TTGGCTCAACCTCATC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CTCTTTCTGTGCCAGG	alt_6032_new	75	23	94	83	28	51	31	54	25	65
TCTATAGGGAATATCT	alt_6032_new	78	45	115	84	42	87	43	92	38	62
TTACAGCCGTAAAATG	alt_6032_new	75	33	95	83	32	77	46	53	36	48
CACGTCTGCATACACG	alt_6032_new	215	91	257	219	91	233	84	181	82	177
CGAGATGTTTAATTGT	alt_6032_new	137	66	189	155	52	128	76	129	56	121
TGGTCCGAGTCAGTAC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CTGAGTAGGTTTAAAA	alt_6032_new	29	14	38	35	16	21	10	24	12	14
CATGGATATCTGACCT	alt_6032_new	131	43	105	110	43	121	34	79	59	93
TGCTTGAATTTCCGTG	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TACCGCACCAGTCCAA	alt_6032_new	23	13	30	25	32	27	22	20	14	17
GCAAAAATCATGAATA	alt_6032_new	13	3	8	8	3	4	3	14	1	8
CGCCTTGTCCTCTGTA	alt_6032_new	427	171	470	452	171	380	167	373	189	329
CCGTTTGGGCATCTTC	alt_6032_new	73	85	127	115	73	70	74	85	74	79
CTTCTAAATATGCAGG	alt_6032_new	48	20	50	41	22	43	19	29	21	34
TACTTCGAATGCTTTG	alt_6032_new	55	27	65	63	21	59	27	57	16	49
CCACAACTATATCTTT	alt_6032_new	9	9	18	12	6	15	8	11	12	9
CTAGTTGGATACGAGG	alt_6032_new	29	20	37	44	23	48	18	42	22	28
ATAGCGCGTCTACGAC	alt_6032_new	208	73	296	230	74	191	101	220	99	169
GTCCGTAGCCAGGGTA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TTGGTCAAGGTCATTA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TTTTCACAGAGTTCTA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
AACCCCGCAAACAATT	alt_6032_new	227	150	315	340	133	255	145	250	154	255
GAGTCATTTCTCTCGG	alt_6032_new	16	7	20	20	12	15	9	19	5	19
AGATCAAGCACTAGAT	alt_6032_new	244	112	316	304	98	252	121	227	112	249
ATCTAATGGATTGTTC	alt_6032_new	30	18	48	37	28	29	21	33	20	30
GCCTGCAATCGGTGCC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
GTACCGCTGTATACTG	alt_6032_new	8	4	12	9	3	3	8	4	2	7
CTGTGGAAGCTGTTTT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CTGCGCGTCTGTGCTA	alt_6032_new	22	45	29	23	29	21	46	20	25	22
TATGTGTCCGTCGAGG	alt_6032_new	50	24	63	54	19	47	23	56	31	52
TGCTGGACCAGTGTGT	alt_6032_new	136	54	196	138	57	135	79	119	47	121
CGGTCCCTGCCTTCCC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TGCGGCCCACGTACTG	alt_6032_new	194	63	266	209	60	185	100	173	85	168
GATAGTCGATCATTAC	alt_6032_new	14	8	24	18	12	15	10	12	10	19
ATATCTGACGAACAGT	alt_6032_new	120	41	157	121	44	145	45	101	31	83
TTGTAGGATGTCTAGA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
AGGTTCGGGTGGTTGC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
ATCTCGGCCTTGCCTC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
GTGTATTTCCGTTTTC	alt_6032_new	255	71	258	280	64	229	56	242	88	183
AACAATATTGTTTGCG	alt_6032_new	23	14	28	29	16	33	12	26	10	36
ATGAGCGAAGTCTGGG	alt_6032_new	82	36	114	87	45	65	45	82	26	64
CTCCTAACTTATTGCA	alt_6032_new	115	43	111	79	49	95	54	87	49	80
TCATTACCAAACCGCT	alt_6032_new	238	98	294	275	115	200	100	225	104	213
GTATTGTATATGCCTT	alt_6032_new	21	9	45	42	10	22	18	28	13	24
CTACTTGCGGAAAAGT	alt_6032_new	150	51	190	182	56	114	80	147	67	145
ATAGATTGACTCCCCA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CTGATTGGAACCTAAC	alt_6032_new	34	24	34	43	8	34	17	36	23	28
GGCCATCGGAATACAA	alt_6032_new	361	194	555	444	221	402	222	398	241	342
CCTGAACTGTAAGCAT	alt_6032_new	116	64	157	141	52	100	59	128	49	124
GTAAGCTCTTGTCAAT	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CTTCCGATCTTCTATT	alt_6032_new	46	26	59	47	28	38	25	42	31	37
TCTGGTCTTCCGAGGC	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TATTTGGATAGGTCTC	alt_6032_new	123	57	145	111	63	117	55	112	52	104
CAGTATCTGTGTTCGA	alt_6032_new	84	60	99	88	58	79	68	73	64	61
GACTACGACGGGTCTG	alt_6032_new	0	0	0	0	0	0	0	0	0	0
CGTACACATTCCCTAT	alt_6032_new	28	65	30	32	67	29	77	15	66	25
GGTGTCCAACTCTGCG	alt_6032_new	81	33	100	66	45	79	43	81	38	105
CCTGTCCTTCGGTTGC	alt_6032_new	69	36	85	75	36	73	30	63	36	55
AGTCCGACTTGAGCAA	alt_6032_new	54	18	51	42	22	43	21	49	21	44
GCGCGACAGTCATATT	alt_6032_new	54	24	66	70	31	51	26	52	16	41
AACATTTGGCTTAATG	alt_6032_new	9	2	11	8	1	3	1	14	4	5
GAACTTCGTTCGTATC	alt_6032_new	42	12	75	49	17	43	22	53	16	31
GTTTTACTGGCAGTGT	alt_6032_new	50	24	66	59	23	56	29	30	20	43
TCTCGCTCTAGGCATA	alt_6032_new	0	0	0	0	0	0	0	0	0	0
TTGTTTAACCCGAGGG	alt_6032_new	194	90	260	217	72	170	82	197	70	155
GGTGTTTGACTTCCGG	alt_6032_new	67	40	94	75	35	65	36	59	37	59
TATTCGTGCCCGCTCA	alt_6032_new	350	116	381	329	123	329	131	333	137	291
GTCGCCGGATTGGGTA	alt_6032_new	49	21	51	37	21	38	33	42	21	46
GAAGTCCTTTGTATTT	alt_6032_new	75	33	92	91	40	85	31	97	32	78
CAGTCTGTCCTAACCG	alt_6032_new	20	11	22	24	12	13	10	18	12	19
GTTTTTCTGTGCCTAT	alt_6032_new	2	1	5	4	2	5	3	4	0	2
TATTTCTGTTCGAGTC	ref_5667_new	20	23	17	18	21	16	21	18	19	26
GGATAGTTCACACAAA	ref_5667_new	7	9	9	2	10	2	9	0	6	8
TTCCGCCCACACCAGG	ref_5667_new	44	51	43	38	45	44	54	34	71	32
GTGGCAACGTATTGGA	ref_5667_new	16	43	32	26	46	22	39	22	39	26
GGTTCACCTCCGCCGG	ref_5667_new	5	12	17	8	20	12	18	9	5	13
TAAGTGTCCGACACGG	ref_5667_new	0	0	0	0	0	0	0	0	0	0
ACTTTAAGCTGTAACT	ref_5667_new	15	41	30	26	37	23	31	16	38	17
CCTGTATTAGAATTTC	ref_5667_new	12	28	27	18	25	20	24	15	31	20
TGGTTTCTTAACCCCT	ref_5667_new	20	19	18	9	16	10	11	21	13	13
GTGTTGTGGCCTGCGG	ref_5667_new	14	25	33	19	28	14	18	15	19	13
CAGTGATTACAGCTTC	ref_5667_new	20	22	12	8	28	18	32	18	28	14
GATGTCTCATGCAGGT	ref_5667_new	3	0	3	1	1	2	0	1	3	4
GCCAACGGTTATTAAT	ref_5667_new	23	29	33	24	29	16	38	13	35	13
AAATGAGCCGTTGATG	ref_5667_new	16	12	15	11	8	9	16	8	15	7
AACGACCTGTGCGTCG	ref_5667_new	4	7	11	9	6	3	5	2	5	6
CGGCGCCCATTGGGGT	ref_5667_new	13	32	14	13	26	13	25	15	23	10
ACAGCCATATATCTTA	ref_5667_new	0	4	5	1	6	4	4	2	5	2
ACTGAGTGGAATTATC	ref_5667_new	1	2	4	0	1	2	0	0	4	0
TAGCGAGGGCCCATTT	ref_5667_new	36	62	47	55	60	40	47	32	55	26
CCCTTAAATGTTGACA	ref_5667_new	0	0	0	0	0	0	0	0	0	0
AAGACGCGAGTTGCCC	ref_5667_new	14	7	15	5	8	9	12	6	16	9
TTAGGTTAATGTACGT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TCGGACCTTTCCTTCT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
CCGTATTTAGCGTTTC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
CTTTTAATTTGGGCTG	ref_5667_new	29	33	30	30	31	24	31	24	54	21
CAAATATCTCCTGGCC	ref_5667_new	36	39	52	37	59	31	48	30	56	38
CGCGTTAGACTAAGAC	ref_5667_new	7	16	7	9	15	10	6	9	10	8
CATACTGCGTCTTGCT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
CGGGATCCGATTGGGT	ref_5667_new	65	61	68	64	73	46	67	50	81	48
TCCCAGCCGGTTTATA	ref_5667_new	11	36	21	21	44	15	44	18	27	11
TTCATTATGTTTCAAA	ref_5667_new	1	4	4	2	5	4	5	2	6	5
GGTGTTCTCGGTCGGT	ref_5667_new	20	29	24	19	28	27	31	16	31	13
GATGCCGTTGTAGTCT	ref_5667_new	40	34	33	24	31	24	49	23	41	21
ATGTTGCACAAGGGTT	ref_5667_new	9	11	13	15	12	11	10	11	24	4
AGACCGGGGTCACTCC	ref_5667_new	32	24	26	25	40	31	28	31	36	21
CAAGAAAAAAGGGCCC	ref_5667_new	21	17	16	16	24	25	24	23	26	22
GGTTTGTTTACGGCTT	ref_5667_new	25	29	32	24	30	27	28	21	36	24
TGGGTCCAGCTTCGGA	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TTACATGGTCTAAATT	ref_5667_new	9	13	10	4	19	6	8	11	4	6
TTCCGAGGGAGAGGTA	ref_5667_new	30	23	22	31	33	29	31	19	27	26
GCTGGAATGGGTATCT	ref_5667_new	42	40	29	31	58	31	46	33	39	26
CTATTGGCCTTGTATA	ref_5667_new	40	36	40	38	63	34	71	30	62	34
GGTATGGTACCACTTT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TCTGCCCCGGGTTCTC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
CTCCTGCCTTTATATT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TAATTGAAGTAGGAAA	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TCAACCAGTATGTTCT	ref_5667_new	29	47	31	39	54	16	55	23	41	23
TGGCCTAATTTCTTGG	ref_5667_new	79	87	77	71	87	54	76	79	99	53
AGGACCGTGTCCTAAT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
ACGTTATCTATTCAAC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TTGGGCCGCTCGGGTT	ref_5667_new	17	44	27	26	51	25	43	22	43	30
CACTGACCCTTTCAAT	ref_5667_new	19	13	18	11	27	14	19	16	14	12
TGGTTCCCGTAGTCTC	ref_5667_new	24	26	25	25	15	19	22	21	23	17
TGCAGTTCTCTAGTAA	ref_5667_new	53	92	73	63	85	49	104	67	112	62
TAATTTGGTGGGTCGT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TACCCCACGCTACCGG	ref_5667_new	4	27	14	10	30	10	19	9	19	6
ACTGTCTGGTTGGTCA	ref_5667_new	28	41	29	31	53	30	32	26	32	31
TTGTGGGTTGCCCTTC	ref_5667_new	10	14	17	10	20	11	22	14	21	11
ACACAAAGGGGGGCGC	ref_5667_new	42	41	55	47	48	41	60	55	45	35
TTTTGCTGCGAAGAAA	ref_5667_new	4	7	3	11	8	4	13	4	11	5
TTTTTTGGTTTTTTAA	ref_5667_new	9	18	13	17	21	15	20	12	23	17
TAACTTCATAGTGAAG	ref_5667_new	69	70	92	62	93	73	108	82	107	67
CATATTTCGGGCATCC	ref_5667_new	62	98	65	59	85	57	86	54	70	61
AGTGTGTTGTACTCTT	ref_5667_new	97	100	91	72	108	55	108	71	123	74
GGATCTCACCTTGCAC	ref_5667_new	43	99	50	56	107	61	101	50	97	56
GACAGGGAGGCGGATT	ref_5667_new	51	44	48	44	44	43	42	44	46	30
AATGGATTATACGGGC	ref_5667_new	2	0	3	2	3	5	2	2	3	2
TTCTGTGATGTTATTT	ref_5667_new	136	131	134	148	141	125	186	125	141	97
AGGAGAGTGTAGCTCG	ref_5667_new	25	32	22	41	40	21	46	29	52	26
GGCGCGTTAGTGGCTG	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TGAAACTTATGCAGCT	ref_5667_new	20	33	37	32	36	33	34	26	42	26
TTACAGCCTGTATCTT	ref_5667_new	44	68	52	40	66	45	77	43	68	42
GCGAGGCTTAAATTAC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TCGTTCTTACACTTGA	ref_5667_new	30	33	35	23	46	23	41	27	31	20
GTTTTGCTTGTGCCGC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
ATCGTATGGTATCTTA	ref_5667_new	21	28	20	17	22	17	23	17	31	12
TTGTGCTACTCGGCCC	ref_5667_new	43	60	62	52	46	51	56	44	67	36
CATCTGTACCAGCGTA	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TTAGGCGTTCCATTAG	ref_5667_new	18	40	29	21	39	26	44	12	32	18
TGCGCCGCCTGCAGCG	ref_5667_new	15	17	20	11	28	9	20	13	27	18
TAATAATCCTGATAGT	ref_5667_new	10	20	17	16	25	16	32	19	26	25
TTATTTCGTTCTTTCG	ref_5667_new	0	0	0	0	0	0	0	0	0	0
TTCCGTTCGCCGGATA	ref_5667_new	14	22	18	12	24	16	14	17	26	14
ATCTATTTCGACTTCG	ref_5667_new	1	2	2	3	1	2	6	2	7	3
GTAAAGCGCTGACTGG	ref_5667_new	11	4	4	3	6	8	9	4	5	3
CAAGTCTAGTATTCGT	ref_5667_new	7	8	14	8	15	10	11	11	10	12
CTGAATCGCACTGCTC	ref_5667_new	30	62	56	54	69	47	77	48	64	44
TTATGAAATCTAGCTG	ref_5667_new	20	24	22	21	22	27	20	15	19	15
TGTAGTTGCATTCAGC	ref_5667_new	8	8	2	10	16	11	10	7	24	9
CTGCGGGGGCATCGTC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
ATCTTCATGTGGACCT	ref_5667_new	0	0	0	0	0	0	0	0	0	0
CGTAATCTGATGTTGG	ref_5667_new	7	9	10	7	9	6	5	4	7	5
CCTGTAGTAGCTGGTT	ref_5667_new	45	76	51	53	92	50	88	41	75	44
TCTGACCCGGGTTCTC	ref_5667_new	0	0	0	0	0	0	0	0	0	0
AATTTATTCTGCGGCG	ref_5667_new	0	0	0	0	0	0	0	0	0	0
CCGCTGAACTTTTCCT	alt_5972_new	4	15	9	3	12	8	14	4	13	8
CCAGGTCTGTTCTCGA	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TACTGCGCTTTCATCA	alt_5972_new	0	2	0	2	2	0	1	2	0	0
TGCTTCCGATGCCATC	alt_5972_new	9	14	6	8	4	4	14	4	9	5
GGTTTAGCGTCTTTGT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TAAAGTACACGAAATT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GAGCTCGTCAGTTATG	alt_5972_new	0	0	0	0	0	0	0	0	0	0
AGCATATGCTAGTCGA	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TCGTGCGTCTACGTTT	alt_5972_new	1	9	2	1	4	0	8	1	5	0
CCCAATACACAAGAAG	alt_5972_new	5	7	6	13	10	8	5	4	7	4
CGCTGGTAATCATGCT	alt_5972_new	1	5	1	7	15	8	15	4	12	8
AAGGACAAAGTTTAAG	alt_5972_new	22	61	40	36	54	36	69	34	64	33
GCTCGGGCGGACATAA	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GCTCCCTCGGCTCCCG	alt_5972_new	30	54	39	21	39	17	52	26	48	27
TCACTTATGTTGGGTA	ref_5972_new	8	20	6	8	29	11	11	4	22	7
CGCCTTCAGGTAGTGC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
CTCGATATGATGGGTG	alt_5972_new	19	24	25	10	22	9	26	12	27	16
TACATCCAACTGTTCC	alt_5972_new	7	9	7	10	10	3	15	5	8	3
GTTGATCTCACGTCTT	alt_5972_new	8	12	12	4	18	6	14	17	16	5
TGCTCTCAAGCCAATC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GCCGTTTCAATAGTAC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GTAGCCCGCTGTTGGC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
CGTCACGATTTTCCCC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TTGGGGTGCCGATGAA	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TGTTGTCAGTAGGCAA	alt_5972_new	5	22	5	5	12	5	16	1	9	5
ATCGTTTGAAGTCTTT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GTTGCATGTCTGAAGG	alt_5972_new	8	22	6	7	7	2	13	4	10	4
GGCTGGCTCCGTCATA	alt_5972_new	9	31	24	14	20	10	31	19	25	11
CCGGTCTCGACTCTCT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
ATTGGACCAGGTGCAG	alt_5972_new	7	27	9	21	33	14	26	13	25	6
AATTACGGGGTGGGCG	alt_5972_new	14	28	23	12	32	24	30	16	22	9
GTTTAGTCAGATCTGG	alt_5972_new	30	41	34	30	37	21	60	39	54	24
GCGAGGATTTTTCCTG	alt_5972_new	9	23	18	24	34	12	27	12	23	8
GCATCGTGGATTGCTC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
CTCAATAAGGCCTGTT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GCCTCGTCTTTCTGTA	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TTAGCACCAGGCAGAT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TGCCGATACCTTCTTG	alt_5972_new	24	44	30	34	22	13	35	10	26	22
AAGGCTTGTGGTGTGG	alt_5972_new	6	23	13	8	17	3	11	11	22	4
TGTGGGTGTTTTAAAG	alt_5972_new	13	10	12	12	14	16	20	9	7	10
TCACTCTGCTTGTATT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TAGATAACCACAGCAG	alt_5972_new	1	3	3	2	6	2	6	2	4	0
TACTCTTTCGTAGCTC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
AACTGAACAATTGAAA	alt_5972_new	8	13	12	10	23	11	18	12	19	5
ATCTGTCACACCTCAG	alt_5972_new	2	16	16	12	15	6	19	6	19	5
CTAGCGTCATGAATCC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GACGATAACCGTCGTG	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TCTTTCGTGTGTTATT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
CGAGTATAGCATGAGA	alt_5972_new	53	124	59	54	123	61	121	34	132	70
ACTGGAACTATGAATG	alt_5972_new	36	71	26	25	60	32	82	27	76	25
CAGCTGGAGCTTCCTC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
CTCTTTCAAAACTCCT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
ATATGAATTAGCGCCA	alt_5972_new	6	10	5	3	13	2	8	4	11	2
TTCTACTGCGTTGCTC	alt_5972_new	0	3	1	3	2	0	2	0	5	3
CCCGGTGCAGTCCGTT	alt_5972_new	7	11	14	3	13	13	18	5	14	7
TCGTTTACATACTCCT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GTAAAACGGCTAGGGT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TGGTTACTGGCCTGAC	alt_5972_new	14	20	20	11	27	13	26	14	22	17
AGTCCAATCTGGTTAC	alt_5972_new	10	15	15	20	31	22	22	25	28	15
CCGCGGCAGACTAAGT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GTCTTTCGAAATGTAT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TCACTCGTAATGTGGT	alt_5972_new	0	8	4	3	5	1	9	3	2	2
CCCTTTAGTTTAGCTT	alt_5972_new	3	8	1	3	5	0	5	1	6	0
CTTCACTCCCTATCTG	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GCGGGACTTAGGACAT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GCTATCGGAAAGCCAA	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TATATCCGCTTTATAT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GATAGCGCCGCTCCAA	alt_5972_new	18	30	19	16	40	11	43	12	41	23
AATCGTGAGCCAACCT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
GTTCCTTAATTACGAG	alt_5972_new	8	5	2	2	5	3	9	4	3	4
GACCATTGCTGCTGAG	alt_5972_new	0	4	1	3	4	4	6	0	6	1
CCTGGTACAGTTTTAT	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TGTATGCGCGACCTTC	alt_5972_new	12	38	42	27	35	18	45	12	30	13
TAACTTGTTTGATTCC	alt_5972_new	0	0	0	0	0	0	0	0	0	0
TCTGTTCGAATGCATT	ref_553_negative	26	45	39	23	43	18	52	26	56	21
AACAGTTATCCTTGCC	ref_553_negative	36	80	61	40	89	35	80	45	86	38
CAGTTACCTGATTAGG	ref_553_negative	3	5	7	3	7	0	5	2	3	1
GTTTAATGCGTTACAC	ref_553_negative	0	0	0	0	0	0	0	0	0	0
ACCCTTCGCGCACGCC	ref_553_negative	39	89	45	35	96	34	86	32	101	28
ACCCCAGAGATGTCTC	ref_553_negative	62	73	56	57	44	58	83	49	72	54
TCATCACGATCCGATC	ref_553_negative	25	32	23	18	46	19	58	24	48	18
TAGCCTTCAAATAGAC	ref_553_negative	17	44	24	22	73	34	77	40	84	19
TTAATCGTAAAGCAAT	ref_553_negative	68	87	84	74	102	72	102	59	120	50
CGTCAACACGTCGCCC	ref_553_negative	18	41	24	19	57	24	53	20	53	33
ATGAAATGGTCTTGCT	ref_553_negative	31	37	35	30	49	41	52	37	64	18
GAAGAGCCAAATATGT	ref_553_negative	5	9	6	7	10	6	9	5	12	6
ATCCCGGCGCTTTATG	ref_553_negative	18	95	23	18	73	23	96	22	93	14
GCTAGAAAACTGCCAA	ref_553_negative	0	0	0	0	0	0	0	0	0	0
TGGTCTGCCAGCGAAA	ref_553_negative	12	22	14	21	20	16	39	12	29	10
TTTGAGACTGTGATTG	ref_553_negative	3	12	9	7	15	8	19	15	15	4
TCGAGCGAATCGCTAC	ref_553_negative	0	0	0	0	0	0	0	0	0	0
GTAATCATATTCAACC	ref_553_negative	0	0	0	0	0	0	0	0	0	0
GTTCGGTCCCGGATTA	ref_553_negative	56	93	76	55	96	45	82	53	79	59
GCTGCGGTTTGACTTG	ref_553_negative	1	2	8	5	8	2	5	3	3	1
GGGTATTAAATCCTGC	ref_553_negative	105	144	140	102	139	88	151	81	153	81
TAGGAGTGTTTTGCCG	ref_553_negative	0	0	0	0	0	0	0	0	0	0
TTGAATTGTAGATTCT	ref_553_negative	27	40	35	39	48	26	45	37	30	32
AGGACCATGAGAATTG	ref_553_negative	64	86	66	69	108	53	108	48	105	70
GTTTACCGTTGGTTCT	ref_553_negative	39	58	40	24	68	47	82	37	57	31
ATGCCACTCACTCAAG	alt_553_negative	86	194	102	77	210	67	208	113	209	66
GAGCCGGGTCAGAATT	ref_553_negative	0	0	0	0	0	0	0	0	0	0
CCTCTAAGTTGCAGTA	ref_553_negative	8	11	17	14	29	7	21	15	32	11
GGTCGTCATATTTGTT	ref_553_negative	8	26	14	10	14	11	21	12	17	12
CCATTATCTGCCGATT	ref_553_negative	31	41	24	36	30	18	29	29	36	20
TGTTACTCTTGGTCTA	ref_553_negative	22	48	22	26	37	15	42	21	41	10
CACAGCTACGGTTCGG	ref_553_negative	23	36	28	18	43	19	43	41	45	31
AGTGGCTGCCCCTTTA	ref_553_negative	4	6	2	2	6	2	9	5	7	3
AATGGCTTTCAGAGTT	ref_553_negative	46	54	45	33	65	36	65	36	69	27
CTCGAATTGCGAGATG	ref_553_negative	2	3	1	5	2	6	4	2	3	2
GTTCCTATAAGATTTA	ref_553_negative	19	43	25	24	30	19	33	25	40	16
CTCCTAAACGTCACCG	ref_553_negative	36	73	34	43	67	25	77	38	82	54
CTGCATGTGCAAAGCG	ref_553_negative	0	0	0	0	0	0	0	0	0	0
TTTGCTTTTTCTTTCC	ref_553_negative	37	60	54	45	67	61	58	32	59	29
TTTAGCCCCTAAATCG	ref_553_negative	63	87	70	45	77	46	71	55	81	49
GAGGATATATTATATT	ref_553_negative	19	28	19	21	24	19	21	27	25	19
GGGCTGCCCAGGAGCC	ref_553_negative	20	28	28	24	26	22	36	27	44	30
TGTCCTCGCTTTCCAA	ref_553_negative	3	6	10	10	4	11	12	9	14	10
CTCGTGCCCCGAAACT	ref_553_negative	4	6	5	3	9	3	5	0	3	3
CTTGTTCTAGTTGATT	ref_553_negative	0	0	0	0	0	0	0	0	0	0
TGTGGTTTTTGTACTG	ref_553_negative	0	0	0	0	0	0	0	0	0	0
CTGCAGGTTCCATTGC	ref_553_negative	44	69	55	33	48	32	65	30	54	40
GGACGGGGTGCTATTT	ref_553_negative	20	21	21	26	21	15	20	15	27	13
TTATTTCTGCAGGCAG	ref_553_negative	48	74	67	69	76	45	73	46	95	39
CTACACGGCGCACAGT	ref_553_negative	8	15	10	4	11	5	14	8	19	3
TATCAGGTTCCACCTA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CATTTGTCCCGCGCTT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CCCTTCCAATCTAGGT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TATAAAGAAAATAAAA	alt_850_RC	29	43	40	33	53	29	31	33	44	26
CCGAGCGATACAGAAC	alt_850_RC	0	1	0	0	5	4	3	2	3	2
TTGATAGGTGTGGGTG	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TATGCCTTCGTGAACC	alt_850_RC	77	78	80	75	72	55	90	67	73	46
AGTAATATCTTGCGCA	alt_850_RC	51	98	80	82	88	64	110	69	95	64
GTGCCAGTTACGATTA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
GAACCCCCTTCGTTAG	alt_850_RC	19	28	22	23	27	16	27	21	30	13
GGCTTGAGAGCGGAGC	alt_850_RC	6	10	8	8	11	7	11	6	8	4
GTAAAGTCAGAACTTT	alt_850_RC	65	99	75	68	104	56	95	70	122	46
TTTATGGCGTATGGAA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TCTAGTAATTGTCTCT	alt_850_RC	8	20	12	4	19	4	11	3	16	9
CAATTGAACGTGGTGG	alt_850_RC	0	0	0	0	0	0	0	0	0	0
GTTAGCGAGTATTATG	alt_850_RC	16	19	12	10	20	13	14	14	18	17
GTGCGGCCTCTTGGAA	alt_850_RC	91	127	102	74	132	97	124	83	127	74
GGATGAAGGCGACTGC	alt_850_RC	6	9	13	8	9	7	12	5	7	7
GTCTTCAAATACACAT	alt_850_RC	9	5	3	5	3	4	9	7	5	6
GTTAAGCCCTACTGGC	alt_850_RC	10	29	31	28	43	12	24	17	31	13
GTTATGAGTTGTTACT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
ACCAGTTCGGCGAATG	alt_850_RC	0	0	0	0	0	0	0	0	0	0
AATGAATGTATATCCG	alt_850_RC	4	4	8	1	3	1	4	3	2	2
TTTCGCAAGGGTCCTG	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TTTTAGTCTTTGATTA	alt_850_RC	3	5	4	1	4	1	4	4	6	1
TCACCTTTTTACCGCA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TGCTACAAGTTTTATA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CTACCAGGGTTCTTAA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
GTGGGCTGATGGTGTA	alt_850_RC	16	24	12	8	14	10	29	12	30	9
AATTATCATTCATGTA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CGTGGAAAAGCTTTCT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TTGCCCGGTCTTCATA	alt_850_RC	1	3	1	0	0	0	0	0	2	0
GCTTGCTTTCAGACCA	alt_850_RC	5	10	13	8	10	6	14	3	3	7
ATTTTACCACCGTGCA	alt_850_RC	26	39	30	20	29	20	31	22	37	27
GGATTTGCATAATATT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CTGCCTATGTGTGTCT	alt_850_RC	6	16	20	11	22	10	24	9	19	9
GCGATATGTCATAAGG	alt_850_RC	45	64	49	70	75	68	76	50	96	49
CTATACGCTGACCACC	alt_850_RC	0	0	3	3	1	2	5	0	1	0
CAACATGTGCGCTACC	ref_850_RC	2	0	6	3	0	2	2	2	2	2
AACGCCGTTTGGCATC	alt_850_RC	30	50	38	26	69	46	57	36	62	22
AGTTGCTGGTCCGTAT	alt_850_RC	20	16	11	21	27	16	37	24	27	22
GAGAAACCTCGTGTCG	alt_850_RC	29	45	43	24	46	25	33	28	49	27
TGCAATGTTGATGTAG	alt_850_RC	2	5	0	7	4	6	8	3	3	3
GTCGGCGGTTGTAGTT	alt_850_RC	11	38	18	13	41	5	46	15	52	9
GGGGACCGCGACTTCG	alt_850_RC	17	35	29	27	19	17	32	24	44	24
GGCTTAGATCCGTTGT	alt_850_RC	10	24	15	16	31	15	18	6	34	15
ATGTATGAGTAGTAGG	alt_850_RC	39	51	51	47	42	35	48	31	57	27
AGACATTTGATGAGTA	alt_850_RC	16	18	23	13	26	13	19	9	23	14
CGAGCGCTGGCTTGGG	alt_850_RC	7	11	6	6	24	3	21	2	6	6
AGTGTTCGCATCGGTG	alt_850_RC	0	0	0	0	0	0	0	0	0	0
AGCCGAACGACGGAAT	alt_850_RC	39	43	46	41	49	35	40	32	48	31
GAGCGTTCCGCCAGGA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CTCATGGTCGTAACCG	alt_850_RC	144	196	165	142	188	139	190	166	189	135
GGATTCCGGTGTGACC	alt_850_RC	4	8	6	3	5	8	13	5	5	3
ATCTGGCCTTATTGAT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CCGGCTTGTCCTCAGG	alt_850_RC	0	0	0	0	0	0	0	0	0	0
ACCCCGTCAATAGCAC	alt_850_RC	11	31	19	14	19	12	29	10	56	10
CCTGTAATTTATAGTG	alt_850_RC	9	19	15	8	27	6	22	9	22	6
TTCCGCATCTGTTAAG	alt_850_RC	19	32	35	21	21	15	35	16	33	20
ATTTCTTATGTCACCG	alt_850_RC	9	14	13	12	8	16	13	12	13	11
TTGCGGGCTCATTAAT	alt_850_RC	157	172	180	138	200	141	206	137	184	131
GATCGTTTCCAGTCTT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CTCGGTATATTATCTA	alt_850_RC	2	5	3	5	2	1	4	0	4	0
AGCTTACCCGATTATT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CACCGACCTGTTAGGG	alt_850_RC	78	133	108	92	139	68	143	80	135	65
TCACTCCGCAAATTTC	alt_850_RC	0	4	2	0	7	2	6	0	7	0
CGTTCGTGGATACTCT	alt_850_RC	12	9	15	12	20	9	14	6	10	15
CTCAAGTTGCATACTG	alt_850_RC	0	0	0	0	0	0	0	0	0	0
CATAACAAACTGTCGC	alt_850_RC	10	16	12	22	15	4	22	14	16	14
TTGGCGGATGGTTCGA	alt_850_RC	9	14	13	6	15	9	15	11	8	6
TACTTAATGCGCAATC	alt_850_RC	5	11	7	4	7	4	6	6	9	6
GGGGAGTCCCTCTTGA	alt_850_RC	34	57	51	47	51	43	65	42	50	29
GCGCCCTTAAGTGGTT	alt_850_RC	22	22	22	20	34	18	31	15	37	17
ATCAGGCCGATGTACG	alt_850_RC	35	44	28	27	60	25	38	20	36	16
TGCTTACAGTAGAAAG	alt_850_RC	16	18	20	14	13	13	26	21	25	14
AATCCTCGAGTGCACC	alt_850_RC	24	39	29	27	40	19	30	20	38	32
CTTGAGTTATATCGTT	alt_850_RC	0	0	0	0	0	0	0	0	0	0
GCGCATTATCAATCTA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TGCACCACGTATAGGA	alt_850_RC	53	83	68	58	81	55	70	67	99	59
CTACGGATCACTGGCT	alt_850_RC	23	30	17	22	20	9	28	15	28	10
AGTCCCCTTCAAGCGA	alt_850_RC	30	30	37	23	49	30	31	29	37	32
AGTGGAGTTCGAATTA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
ATCAGGCTCCAATATC	alt_850_RC	42	56	57	48	59	38	65	49	67	39
TCCGAAGTCTTCGTCA	alt_850_RC	0	0	0	0	0	0	0	0	0	0
TACCTAGTTGGCTAAA	alt_850_RC	9	12	8	7	10	5	11	8	12	3
TAGCTAAAGAGCCGCC	alt_850_RC	29	46	51	49	68	44	47	31	64	33
CGTGTTTAATTGTATA	alt_850_RC	6	9	6	2	8	2	10	4	3	2
GAACTTGATAAGGATC	alt_850_RC	0	0	0	0	0	0	0	0	0	0
ACATCAATTCTGATGT	alt_850_RC	11	26	12	13	23	17	26	19	25	23
TACAATTCACACGATT	alt_850_RC	23	20	22	15	12	13	11	11	17	12
CTTTGGCTATCGCTTT	alt_850_RC	57	61	61	48	84	44	71	41	95	37
GCTATACCGCCAATGT	alt_850_RC	4	2	0	2	4	2	3	3	1	1
AGACTGTTTAAGTCAC	alt_850_RC	34	63	60	45	69	40	76	53	86	46
GCTATGTTAGGTTTCG	alt_850_RC	28	47	36	28	34	19	40	22	54	27
CTACCTTGCCCTTTAT	ref_3781_fdr	33	29	42	39	20	49	22	38	22	31
CCTTTATCCTAGCACA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCAAGCCGTCGCC	ref_3781_fdr	2	10	7	1	7	1	13	2	14	3
GCTACGGGTGACGTAC	ref_3781_fdr	82	61	150	110	77	105	91	98	96	120
AGTCGCACTCCCTGTG	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
CGAATTCACATGCGCT	ref_3781_fdr	79	55	100	62	58	81	46	98	63	85
GGTATATGGCAATTTC	ref_3781_fdr	35	18	36	29	15	26	16	29	27	27
CTACACTAGGATCATT	ref_3781_fdr	89	57	109	116	73	99	80	82	91	76
CACACAGTTAGAACCA	ref_3781_fdr	19	20	34	20	12	23	27	26	26	24
CTCCTGTTTTAATTTT	ref_3781_fdr	0	1	3	1	2	1	3	0	7	0
CGTCGAGGTACCGACA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TTTAACAAACGCCCAT	ref_3781_fdr	98	67	86	95	64	91	61	92	54	76
ACACCTCCCGTGGCAT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTGCGGCACAAGT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TATCTGGGCTAGATTG	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
CACAAGTCGATGCTGC	ref_3781_fdr	61	96	71	81	89	68	83	87	106	61
GAACATCCGAGCATTC	ref_3781_fdr	68	50	113	94	73	82	87	63	62	79
GGCTAACGATCGGGGT	ref_3781_fdr	11	1	8	2	5	4	5	12	3	11
CCCAATTAATCCGCTT	ref_3781_fdr	1	2	1	8	4	0	3	3	7	4
AGTCAACGTAATCGTT	ref_3781_fdr	125	79	153	123	88	106	106	110	95	115
GGCACAGTCCGCCTGA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGACTGTGAACCG	ref_3781_fdr	10	24	6	9	17	4	17	10	40	3
AGCAATTGTGCGACGT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTTTACATGCATT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCTGAGTCCGGGT	ref_3781_fdr	76	47	90	70	62	66	43	79	53	82
GGCACTGACCTTTCTA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGCTGAGTCACTA	ref_3781_fdr	22	25	26	45	28	21	15	31	18	33
AAACTGCATGCTATTG	ref_3781_fdr	102	73	125	114	62	101	74	85	89	89
AGCTTCCAGGGGTTCT	ref_3781_fdr	16	11	10	16	7	7	6	10	19	14
GAAAGTTCTTTCTTCC	ref_3781_fdr	7	2	12	9	2	5	4	8	6	4
GTGAGAGTTGATATCT	ref_3781_fdr	13	10	9	15	7	13	12	7	10	8
CCAGTCTGCCAGTTTA	alt_3781_fdr	77	45	86	97	51	77	64	78	67	74
CACCGTTCCCCACTGC	ref_3781_fdr	201	202	244	191	239	190	239	194	240	163
TTAATGAAATAACTCT	ref_3781_fdr	41	18	58	37	35	44	45	33	45	39
CGCCTGGTGGTTACTC	ref_3781_fdr	251	203	341	263	222	264	224	287	204	241
TCCAGTGGGGCCCGTT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
AAAGAGCTACCTAAGC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTTTAAGTAGGGC	ref_3781_fdr	74	49	119	76	69	56	50	77	59	68
CGTGATTTATTACTTT	ref_3781_fdr	67	27	55	61	46	43	43	56	45	41
CGCAGACCTGTAGGCT	ref_3781_fdr	31	23	54	31	27	32	29	35	19	36
ATTTTTCGTCAGTGAA	ref_3781_fdr	44	35	54	40	25	42	30	33	28	34
GAGTCGTTTACTTAGG	ref_3781_fdr	116	86	154	111	88	108	73	100	94	97
TTTTTGCGTGAGCAGA	alt_3781_fdr	27	24	36	32	38	31	18	47	22	28
AGGTAGTCACATGACG	ref_3781_fdr	31	7	37	31	21	28	25	23	21	22
ATATCTTAGCTAGAAC	ref_3781_fdr	45	44	61	39	47	32	42	46	51	33
CGAGTTGTGAAGGTCA	ref_3781_fdr	133	127	151	163	156	116	132	151	142	120
CATATATTTTGGTTGT	ref_3781_fdr	31	24	37	28	23	26	17	23	34	33
AAGCTGTGGCCGATTT	ref_3781_fdr	82	54	99	73	64	81	65	75	60	74
CCGGCTGGTAGCAAGT	ref_3781_fdr	23	44	45	29	30	24	21	25	34	27
AGGCGTGTAAGTCGTA	ref_3781_fdr	57	40	65	63	35	43	49	51	32	54
CAGACCTCTTGAGCGT	ref_3781_fdr	49	46	74	61	47	59	43	49	38	63
CTCGCCGCTCTGTGGT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTTGATGTTCTTC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTCTAGAACAGTT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
GATCTATTCTCCTCGT	ref_3781_fdr	136	71	157	111	79	92	78	87	70	112
GTTGCCCCAGGCTAGA	ref_3781_fdr	15	19	24	21	18	20	21	18	12	28
AGGTTAACCTCCTTTA	ref_3781_fdr	41	24	37	31	14	42	22	20	31	25
TTTTTCACCCGTCTCG	ref_3781_fdr	12	13	15	14	6	10	8	17	11	14
GTCCGGGGTCAAATTT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGCCTGTATAGCT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TATGCTTTATCGCAGT	ref_3781_fdr	37	39	55	40	28	39	29	39	29	24
CGGGCGCTTAGACTCC	ref_3781_fdr	36	22	55	33	15	33	24	45	32	39
ACCTTAGGAATCCCCG	ref_3781_fdr	12	12	14	12	10	5	12	7	7	4
CGATATACGCGGACAT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
AGCTAGTGTAAAAGAG	ref_3781_fdr	25	19	44	26	28	33	23	29	24	19
AACTAAAACAAAGCGA	ref_3781_fdr	33	38	51	50	35	43	34	59	45	43
AATCAACTTAGATTCC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGGCACTGCTGGA	ref_3781_fdr	145	126	203	178	117	159	120	154	99	122
CTCCCGACTTTCTTGT	ref_3781_fdr	20	20	23	22	33	18	29	14	28	19
TTTACTGTTCCATTAT	ref_3781_fdr	74	36	99	62	50	67	50	68	52	44
CTCTTTATCGTACTCA	ref_3781_fdr	216	216	216	200	250	178	226	197	209	163
CACTTGCGCTAACACC	ref_3781_fdr	66	93	93	74	88	73	69	66	79	45
CTATAAAGCTATATAC	ref_3781_fdr	26	30	53	31	29	34	31	36	38	38
GTCTTCAGACGTGCTG	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TGGAACAAGATTCATG	ref_3781_fdr	473	314	565	477	285	408	371	427	328	380
TATCTGCAGGACGACT	ref_3781_fdr	15	13	22	18	5	8	8	14	19	11
TCTCGCGCTTCGTACA	ref_3781_fdr	125	66	125	86	71	110	83	97	72	87
ATTATCGGAGTAGTCT	ref_3781_fdr	188	124	221	172	135	193	154	190	139	188
AATTGACGGTTATAAA	ref_3781_fdr	21	20	33	25	13	28	25	31	13	22
TGACAGGCTTTAATGG	ref_3781_fdr	11	15	20	16	13	10	8	12	12	5
TGAGGGATTAGTCTAT	ref_3781_fdr	125	111	166	135	102	120	127	125	119	109
GCTTCCCCACAGAATA	ref_3781_fdr	38	29	59	36	45	41	28	31	39	28
AACCTCTGGGTCCGTT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGGTACTCGACG	ref_3781_fdr	21	24	41	18	30	24	29	24	25	26
TGGGTTAAATTTCAGT	ref_3781_fdr	114	48	99	115	71	113	73	86	84	65
GTGCCGTCTTCCAGCG	ref_3781_fdr	0	0	0	0	0	0	1	0	0	0
CAACGACTCGTGACAT	ref_3781_fdr	68	65	76	84	62	74	69	64	75	68
AATGCGGTTCGATAAC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCAACGTCCGGAT	ref_3781_fdr	16	22	28	25	21	22	22	21	24	20
AGGTCGCCTAAGCGTT	ref_3781_fdr	11	4	15	9	8	5	2	12	10	6
TGAATACGGGAGCCCC	ref_3781_fdr	16	16	23	30	10	22	15	18	17	11
ACTGATTCTATGGGTA	ref_3781_fdr	65	43	48	67	47	63	45	47	44	57
ATTTCCACCTACAACA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTTGTATTTGCG	ref_3781_fdr	169	109	168	137	123	145	115	123	104	135
GTTTAACGAGATGTAA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TAGGATTTGCTCCCAC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGTCACTTATCGG	ref_3781_fdr	25	22	20	21	20	28	17	21	17	24
GACTTCTCGCCGCCCC	ref_3781_fdr	20	12	26	23	14	21	18	13	11	17
GGTGAGGATTTTTGTG	ref_3781_fdr	67	43	74	97	36	72	53	70	42	70
ACGCGCACTACTGCCG	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTACTCGCTACGTTTC	ref_3781_fdr	50	27	58	49	22	41	33	41	20	35
GGGGATACCTCAAAAC	ref_3781_fdr	8	4	10	9	7	5	5	14	6	7
GTGTTTTCCTCACTTA	ref_3781_fdr	22	17	25	30	12	17	7	16	15	12
TGCTCTCTCTGTACTA	ref_3781_fdr	22	9	21	21	17	20	10	18	16	15
ATTTCCTAATTCGTTT	ref_3781_fdr	14	12	21	17	8	20	19	17	13	19
GTATTCAGTCAGTCAG	ref_3781_fdr	105	86	104	112	91	82	84	69	72	86
ATAATTTTTCTGAACG	ref_3781_fdr	51	39	51	66	39	49	38	51	38	50
GTCGGCAGAAATCGGA	ref_3781_fdr	27	19	38	41	17	22	15	27	14	26
ATCCTCATCTGAATAA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGGGTCCTCGCTA	ref_3781_fdr	56	45	68	44	36	56	56	52	81	53
ACGTAATTTGCTCGTC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
ATATACCCCCCTCCGC	ref_3781_fdr	138	126	127	114	145	109	128	120	155	115
TGCTCTTGTATAGGCC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GACGGGCTTCACAGCA	ref_3781_fdr	40	32	48	52	25	39	39	40	27	46
AGATCCTCTCGAGATG	ref_3781_fdr	50	31	52	34	35	42	32	33	23	38
CGTGAGCATGAGACAT	ref_3781_fdr	104	69	104	94	63	81	92	75	64	91
GCTTGAAACGTGATGT	ref_3781_fdr	49	37	69	42	35	60	35	49	42	33
TCTCCCCGTGTACGTT	ref_3781_fdr	2	17	5	5	29	0	18	1	26	7
GACCCTAAATCGAACA	ref_3781_fdr	18	9	15	23	10	17	22	11	15	17
TCGCTCGTACTTTTGC	ref_3781_fdr	70	88	80	72	117	61	91	52	114	55
AACTTACTGTGAGTTT	ref_3781_fdr	4	4	6	3	1	6	2	5	2	2
ATGGTTGGTTTCTATT	ref_3781_fdr	23	20	22	24	25	21	24	22	21	18
ATCATACCCTTAGAGT	ref_3781_fdr	4	1	5	3	3	0	6	7	7	4
GTTACCGATCGCCAGA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTGCAAAGGCACG	ref_3781_fdr	50	30	63	65	41	53	23	47	44	41
CCACCTGAAGCTATTG	ref_3781_fdr	13	13	23	22	18	12	9	13	15	19
GACCTTTTTGCCGACA	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
ATAATTGACTCTGCGA	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGTCTTAATTCA	ref_3781_fdr	12	14	23	10	14	11	15	22	13	11
GATATCTTCGCATCCC	ref_3781_fdr	97	67	109	85	86	79	71	81	72	92
GTACTTGAGATTACTT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTACGGAATGGCG	ref_3781_fdr	191	142	181	196	109	171	126	166	111	158
TATAAACCTTGTCTAG	ref_3781_fdr	34	23	44	37	19	43	40	41	29	34
TTATTATAGGTAATTG	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TCACCACACCCTTTTC	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCACCCAGTTTGG	ref_3781_fdr	70	28	90	73	59	65	56	74	43	71
TAACTGGTTCAAAGCC	ref_3781_fdr	21	12	26	23	10	14	13	10	17	13
GTTCGACTAAGAGTTT	ref_3781_fdr	19	6	9	13	4	15	14	11	13	13
TCCAACCCATCGGTAT	ref_3781_fdr	28	16	41	26	26	24	37	25	26	23
TGGACCGCCTTTTTCT	ref_3781_fdr	54	45	78	65	41	69	50	59	64	63
AATATCATGATCTGCT	ref_3781_fdr	0	0	0	0	0	0	0	0	0	0
ACAAACAACCATGCTA	ref_3781_fdr	7	19	10	17	18	8	21	7	15	13
TCGGGCCATCCGCTGT	ref_3781_fdr	1	12	2	6	11	1	3	2	10	1
TGAATGGATTTAAGTA	ref_3781_fdr	19	19	27	25	18	18	18	28	18	24
GCACGCGCTTCACCGT	ref_3781_fdr	33	16	40	33	27	46	25	27	20	33
ACGGGCAAGCTCGCGT	ref_3781_fdr	24	10	18	15	10	18	15	21	14	24
GAGACAGAAATGGACA	ref_3781_fdr	147	95	144	129	104	118	93	138	73	113
GGTCTTGTAACAGGGA	alt_5678_new	17	9	20	12	8	26	5	16	6	19
GCTCGTGCACTATCAT	alt_5678_new	41	14	46	28	35	29	16	29	30	45
AGCCCAGGTCTATTGC	alt_5678_new	0	0	0	0	0	0	0	0	0	0
CGCTATAATCCGCCAA	alt_5678_new	94	52	113	106	38	89	37	98	36	95
GCCGCCCCATGATCCT	alt_5678_new	29	6	38	31	4	30	5	19	5	20
TATTGTGGCGCGGACG	alt_5678_new	49	20	62	74	34	68	34	60	36	48
CCCGATATTGCATTAT	ref_5678_new	114	67	149	123	85	129	71	133	60	139
GCGTAGTATCGCTTCG	alt_5678_new	0	0	0	0	0	0	0	0	0	0
TATTACAAAGCTGCTA	ref_5678_new	528	280	584	523	289	479	272	475	298	389
CATTGTTCGTGCTTGT	alt_5678_new	0	0	0	0	0	0	0	0	0	0
CGCCATAAAAAAGCGC	alt_5678_new	158	65	177	172	76	151	81	156	78	148
AGCATTACGCCCACTG	alt_5678_new	190	75	221	179	93	171	63	147	90	173
CAGGTCGCTTATTGGT	alt_5678_new	125	54	117	104	59	89	55	90	74	83
TTTTCACCATTGCAAG	alt_5678_new	336	190	416	398	184	385	172	354	212	307
GTTCCATGACACTTCA	alt_5678_new	397	188	453	439	226	378	235	388	230	345
TACACATGCGGCAATG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
GAGGTTCATCGACTCC	alt_5678_new	9	3	4	8	8	3	8	8	7	6
GTCTCGGAATGGCCGT	alt_5678_new	103	55	118	124	50	107	37	124	54	95
CAAGCGTACCGATGTC	alt_5678_new	9	11	11	9	6	13	2	4	1	5
CCGGGAGGGGCCTGAT	alt_5678_new	0	0	0	0	0	0	0	0	0	0
AAAGTATGCAGTACAT	alt_5678_new	56	20	56	56	23	56	25	53	41	53
GTTATTCAATTGCTTT	alt_5678_new	87	48	117	107	45	115	39	87	65	121
GGTTGCAAGCCTTAGT	alt_5678_new	0	0	0	0	0	0	0	0	0	0
GCTCCAGTGAGTAGAC	alt_5678_new	53	26	59	53	22	57	28	46	23	50
GCTACTTTGCGAGTAT	alt_5678_new	74	46	82	80	33	72	36	77	35	62
CCATTCTGTCGGTCGT	alt_5678_new	35	31	45	32	38	24	33	30	32	29
CGGTTGCTGCAGCTGT	alt_5678_new	0	0	0	0	0	0	0	0	0	0
TTCTCATACTGAAAAC	alt_5678_new	246	145	294	250	155	220	154	193	138	207
AGCTTTAGATTATGGG	alt_5678_new	124	54	142	128	62	120	59	113	76	93
TTATCTATAACTCTGC	alt_5678_new	187	94	235	194	104	207	112	164	96	177
CACCTCCTTGCTCCAC	alt_5678_new	49	27	57	46	26	48	23	45	25	34
GCCCTCACGGAACCCG	alt_5678_new	0	0	0	0	0	0	0	0	0	0
CCACGGACGGGTCTGA	alt_5678_new	79	20	93	83	31	53	31	75	31	65
CGGTCGAGCGGTCCAA	alt_5678_new	26	19	36	27	16	21	23	36	13	30
AGCTTCCCCAAGACCT	alt_5678_new	52	23	76	73	49	58	47	74	35	76
CGGCCTTCCTCTCATA	alt_5678_new	29	8	37	27	18	33	11	19	23	27
TGATATGCAAAATACA	alt_5678_new	67	32	70	63	22	48	35	60	28	37
GTACCTGGTTTAAACA	alt_5678_new	0	0	0	0	0	0	0	0	0	0
GTTCGATATCTATATT	alt_5678_new	56	38	82	66	42	53	39	60	33	49
CTTGTGAGTAGTGGTC	alt_5678_new	0	0	0	0	0	0	0	0	0	0
AAGCTCACTTAGGGTC	alt_5678_new	167	90	194	170	74	174	84	165	92	159
AGGGGCTGGACGGCGC	alt_5678_new	1	4	2	2	5	0	5	0	6	0
TCGTCATCCATGTCCA	ref_5678_new	329	228	350	359	248	277	247	327	245	273
CACTGCACCAGGCTTT	alt_5678_new	143	58	132	146	74	127	69	130	101	132
CTAAGCTGGCCAGGTC	alt_5678_new	16	12	22	15	11	15	7	12	12	22
ATCGTCCGGGGCTAGA	alt_5678_new	70	31	83	75	29	72	46	71	38	65
AGCCGGTCCACTCATG	alt_5678_new	19	27	17	20	30	21	34	20	34	13
TAATGCTCAGCCTTCA	alt_5678_new	33	11	41	35	15	14	16	21	12	25
TTCTCATAGGGTTAGG	alt_5678_new	458	224	538	483	209	477	236	468	222	402
ACGTAAGTTTCAGTAA	alt_5678_new	66	31	66	52	21	49	26	45	38	53
GTATATTTTTGATTGG	ref_5678_new	386	172	510	447	208	422	196	386	196	371
GTTATTTGCGCGTTCT	alt_5678_new	16	9	20	14	7	13	11	15	4	15
ACCGCAAAGTACAGCT	alt_5678_new	0	0	0	0	0	0	0	0	0	0
GCCTTCTTTCTCTATG	alt_5678_new	34	16	33	29	13	52	19	37	14	28
TGATCTAAGGGAGCCC	alt_5678_new	0	0	0	0	0	0	0	0	0	0
CTCCCCTCCCACGATA	alt_5678_new	25	13	51	29	7	28	20	32	10	29
TTATGGGGGCTCGCAT	alt_5678_new	0	0	0	0	0	0	0	0	0	0
CTAAAATTGTTGATTC	alt_5678_new	30	9	31	28	11	29	12	23	19	21
ACTGTGTTAGTTCGAC	alt_5678_new	0	0	0	0	0	0	0	0	0	0
CCAATTGTCGTAACTA	alt_5678_new	57	34	73	55	28	56	36	37	25	48
TGGGTGGCATAGAACA	alt_5678_new	24	8	21	23	6	27	13	13	11	27
ACCTTTGCGCTGCGTC	alt_5678_new	78	37	68	71	57	66	36	65	45	55
ATGGGAGTTTAGTCTG	ref_5678_new	74	54	92	97	55	86	54	91	49	87
AAAGTTTACGCATGTG	alt_5678_new	67	32	66	62	39	50	29	63	37	74
AGTGATTATCGGATGC	alt_5678_new	1	4	5	4	2	6	3	6	1	4
TCTATTTCTGTGAGTG	alt_5678_new	63	46	71	50	30	66	40	71	32	47
CCGGGCTAAGCACGAG	alt_5678_new	103	60	120	97	55	105	46	89	50	98
GAATATGAGAGTACGG	alt_5678_new	16	10	13	12	5	11	5	12	7	22
TGTCCGGGATTGTCGC	alt_5678_new	113	51	149	129	54	109	49	127	61	91
GTCGCTGGATTTGGTC	alt_5678_new	439	227	519	548	230	468	247	441	284	437
GACGTGTTCTAGTGGG	alt_5678_new	91	52	122	85	63	81	61	85	59	95
GGCAAACAGGGTATTT	alt_5678_new	632	254	734	705	343	537	320	518	334	515
ATGTAAGAGTTAGTCG	alt_5678_new	13	3	8	7	6	3	5	8	1	8
GATACCTCGCACGTCA	alt_5678_new	228	86	310	272	82	219	104	230	97	238
CTCGATGCATTCTGTA	alt_5678_new	29	26	49	41	24	36	22	37	23	30
GCGGGGTGTCGTCGCA	alt_5678_new	149	81	167	160	77	150	65	142	85	129
TCATGCCAATCATTCA	alt_5678_new	81	44	113	87	52	97	68	105	39	104
GACTCGCACTACGTGG	alt_5678_new	199	91	221	182	88	167	81	162	108	183
AATCGTCCGCATGTGG	alt_5678_new	14	8	22	21	15	20	7	20	11	24
TTATGGGGGCTTGCAT	alt_5678_new	210	119	298	235	121	248	119	222	114	211
CACTTTAACCGGCTTT	alt_5678_new	97	30	91	79	28	60	39	85	42	75
ACCAGGAATTTCGTGA	alt_5678_new	76	24	70	81	26	63	42	60	36	58
GTAAGTTACTTAGCTG	alt_5678_new	0	0	0	0	0	0	0	0	0	0
TCGGCATTATTAGATC	alt_5678_new	0	0	0	0	0	0	0	0	0	0
GGTAGCCCCGTGAGGG	alt_5678_new	0	0	0	0	0	0	0	0	0	0
CGGCGTGACTGATGTC	alt_5678_new	159	83	205	194	79	154	83	148	70	146
ACGGAAAAAAAGTGAG	ref_5572_fdr	41	67	42	28	72	35	43	35	53	30
TTTGATTTAGTAGCTA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
TATTATCGTCGGACAC	ref_5572_fdr	9	2	6	3	7	4	5	4	12	7
GAGACCATTACTAAGG	ref_5572_fdr	21	28	22	21	33	6	28	17	32	24
AGACTCTTAATCAGGG	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
TCAATCAGGTCTCTGA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTATACATGTTCT	ref_5572_fdr	40	68	45	31	65	41	61	33	61	23
CCCGAACAGTGCGGAT	ref_5572_fdr	16	32	19	26	27	19	38	32	33	14
CATCAGCACACAGGCA	ref_5572_fdr	10	22	21	14	31	14	30	11	37	11
GAGTCTCACGTTCGCC	ref_5572_fdr	2	11	2	5	7	8	15	2	8	6
TTTTCCTTTGTCCTGC	ref_5572_fdr	36	37	42	35	44	30	44	32	44	26
CAGATGGAACGGACAA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
ATACGGATACCATCTA	ref_5572_fdr	40	70	56	40	75	41	84	46	86	44
CCATTACTGTCGGCGG	ref_5572_fdr	21	23	16	24	37	19	39	10	34	13
CTGCCCCGGTTCCGAC	ref_5572_fdr	51	62	56	60	77	51	51	40	76	45
TTGCCTGGTTTCGAAT	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGCGTGTCGTGCA	ref_5572_fdr	25	24	40	27	20	18	32	12	41	11
GCACACGGATATCCAC	ref_5572_fdr	0	7	5	1	5	0	2	1	1	0
CGCGCCGGCAGCAACG	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
TATCTAGGATCAGGTT	ref_5572_fdr	86	146	105	97	142	97	151	105	133	72
ATCGTCTTAGAGAGCC	ref_5572_fdr	19	13	14	9	19	13	27	11	16	10
TCGTAGTAGAAAGCGC	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
TAGTAATTTAGCGTTA	ref_5572_fdr	25	21	29	24	37	19	41	28	32	23
AGCAGAATACGATTAG	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CGCTATTACTCCAAGT	ref_5572_fdr	25	23	33	24	18	21	30	14	25	20
GCATACCGCCCGCCGT	ref_5572_fdr	23	18	27	28	30	18	29	21	31	31
CCATGCGCGGAGGTCT	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
AGATCCTCTGGGTAAC	ref_5572_fdr	19	28	31	24	37	21	27	20	37	21
CTAAGGCGTCCAAACC	ref_5572_fdr	124	179	150	128	177	109	210	99	211	101
TCTTCTGATCGGCGCG	ref_5572_fdr	3	1	4	9	4	2	3	1	7	3
TCTATCTATATTGCAG	ref_5572_fdr	10	16	21	14	28	15	29	16	22	8
TCACCTAAAGCCTGGC	ref_5572_fdr	5	10	4	7	10	3	13	6	15	3
ATCCCTTGACTCGTTA	ref_5572_fdr	3	13	11	7	9	6	7	6	8	6
GTCCAAGTGGGCGGAG	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
ATAACACTTGTACCAG	ref_5572_fdr	18	32	25	22	40	26	22	16	47	19
ATATTAGGATAGTTAC	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGGGGTACTATA	ref_5572_fdr	59	77	57	38	69	30	66	61	72	46
AGGCTAATCTTGCTTA	ref_5572_fdr	9	84	12	13	97	8	102	12	92	8
GAGGCCCTCTTCTTCG	ref_5572_fdr	33	54	55	37	56	39	56	38	50	24
GCGCCCAGCACGTTCG	ref_5572_fdr	66	68	79	59	61	51	86	56	73	54
CTGGAGCCTCGTCGTA	ref_5572_fdr	15	12	13	9	7	10	7	5	13	10
ATCCACGGATTTCGCC	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTACGATCGAATT	ref_5572_fdr	14	18	10	11	13	8	7	8	7	8
GTACTTTTGGGAAATC	ref_5572_fdr	13	29	21	26	37	12	27	21	20	7
ATAACGAATTAGGTTA	ref_5572_fdr	1	1	0	0	1	2	1	0	2	2
CCCTCCCTATAGCCTC	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACGCCACATACA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTCCATCAGTTTC	ref_5572_fdr	9	33	13	14	32	17	36	14	30	13
GCGGGTGTCAGACCAT	ref_5572_fdr	6	10	4	8	9	4	7	10	11	7
CACCCTAGATTATGGG	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
AAAATGTTTTCCTTGC	ref_5572_fdr	11	14	11	13	20	25	27	15	20	15
AGCTAATTTCCCTGAA	ref_5572_fdr	28	25	23	13	23	24	31	20	35	13
ACTGCGGCAACGCCGG	ref_5572_fdr	20	28	15	16	31	10	31	16	20	20
TAAGTCTGGTAATATT	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CACAAAACGACTGATG	ref_5572_fdr	159	224	156	170	234	162	239	168	278	130
CGGATTGGTTTAAGTC	ref_5572_fdr	29	56	26	30	49	32	48	43	62	27
CATGCATGTAGGCGGG	ref_5572_fdr	23	77	38	42	58	47	45	52	52	26
CAATTCGGGGTGGACA	ref_5572_fdr	25	23	30	27	29	18	24	17	20	30
AACACCCGGGCCGCAA	ref_5572_fdr	2	1	4	3	4	2	2	3	8	4
TTGCGGTTTATCATAT	ref_5572_fdr	7	14	11	8	19	12	10	5	6	9
CTGTGCCACGTCAAGG	ref_5572_fdr	115	162	136	112	158	92	176	108	164	113
TATAGCGGGGTCGTGA	ref_5572_fdr	64	62	79	50	84	58	69	47	93	50
TGCAAATCAGCCCGTG	ref_5572_fdr	67	96	74	69	89	77	101	59	115	59
TGACATTTCAGCTGGA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CACCCAACGAACTTTA	ref_5572_fdr	75	110	85	74	125	59	112	75	114	59
GCGGTCCCTGTACGTA	ref_5572_fdr	29	28	26	28	36	16	33	27	45	23
ATGGACGTTCAGTTAT	ref_5572_fdr	7	14	9	8	9	16	9	7	9	8
CGGCTCTGACAGAAAG	ref_5572_fdr	21	24	26	18	19	17	26	17	27	16
ACTGGTGTGTTCTGAT	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTAGAATTACTTA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CCATTGTTTCGGATTC	ref_5572_fdr	13	26	15	18	10	17	12	18	17	9
TAACTGGCTCATGATC	ref_5572_fdr	9	18	12	13	20	15	18	12	12	11
GCGAAATTAGCTTCGC	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTAGGTGACTATT	ref_5572_fdr	22	46	19	20	47	35	20	13	36	25
GTAAATGTAAACAAGA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CGCATCCTATTTAGTT	ref_5572_fdr	28	27	16	22	29	22	40	16	34	22
AGTTGGACATGTGTCA	ref_5572_fdr	22	28	26	22	25	23	42	21	28	12
TACCTGTATTTGCCTT	ref_5572_fdr	0	2	2	1	5	0	3	3	6	2
AAACCGTGCCTATCTC	ref_5572_fdr	2	2	1	3	3	0	0	1	6	6
AGAGACCTTATTGTGG	ref_5572_fdr	51	67	50	48	53	42	64	46	67	29
TGTCAGGCAAGTCTTA	ref_5572_fdr	6	0	4	1	2	0	4	1	3	1
CGTCGCGACTTGCTGC	ref_5572_fdr	36	43	34	34	55	45	75	22	52	16
TACGCACCTAAGTAGA	ref_5572_fdr	16	26	30	17	28	14	34	15	28	14
TCCTGTTATTTTGCTA	ref_5572_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTCCGTCGTCTTG	ref_5572_fdr	4	10	8	14	3	2	18	2	7	3
ACGTAGTGTAGCCCCT	ref_5572_fdr	10	24	22	13	16	16	22	12	31	11
TCTAGTATTTAACGCT	ref_5572_fdr	3	4	4	3	7	3	9	6	10	1
GTGAAGTGTGCTGGGC	ref_5572_fdr	6	8	3	5	5	6	5	3	8	7
CCTTTTCCTTCTTGTC	alt_5624_new	18	34	14	18	37	12	33	17	31	16
TCACTCAACTGATCAT	alt_5624_new	10	11	11	6	10	9	13	10	15	10
GGAGGTGGTTATCTGA	alt_5624_new	22	38	50	33	48	30	38	36	37	33
TCATTACAATTCAGAC	alt_5624_new	38	39	36	17	51	23	51	24	41	28
CGCTCTTTATTTCCCC	alt_5624_new	34	43	33	30	38	24	44	36	35	31
GACATTGAGGTTGTAT	alt_5624_new	54	81	66	47	90	40	97	47	69	40
TGGCAAATTCTGCGGC	alt_5624_new	4	7	1	1	5	4	7	2	7	3
ACCAAAAACGGTTGCT	alt_5624_new	9	11	9	13	11	6	18	10	15	9
TATTGCTCTGCGTTGT	alt_5624_new	82	127	81	84	161	77	148	93	134	77
GCGCTATACTTGTTCG	alt_5624_new	17	31	24	8	22	17	26	8	39	9
ATCCCCGTACCAACCT	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TTAGCTGATTCCCCGT	alt_5624_new	9	21	13	10	30	10	43	13	41	14
TGGCGGTCGTGCCGGA	alt_5624_new	12	16	19	15	12	9	23	16	29	14
AAGACTACCCCTAGTG	alt_5624_new	0	0	0	0	0	0	0	0	0	0
ATCCATCGTTTAATCG	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TGTTCAACTCCATGTG	alt_5624_new	7	51	21	7	52	21	29	14	43	9
CCCGGCTCCTGGTCCA	alt_5624_new	0	0	0	0	0	0	0	0	0	0
CTCATGGGTCACTCTA	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TCGTCATCTTTGATCG	alt_5624_new	32	51	36	29	52	31	39	22	55	23
TGGGTATGTATTCGTT	alt_5624_new	0	2	0	0	0	0	1	0	0	1
ATCGCGGGCATCGGAT	alt_5624_new	88	139	96	88	112	85	130	86	132	90
TGTATCTGTGCTTATT	alt_5624_new	30	41	24	28	58	29	53	20	58	26
TGCCCCGCTCTAAGCG	alt_5624_new	67	79	81	60	79	57	99	41	95	68
CCACGAGTTTATTGCG	alt_5624_new	0	0	0	0	0	0	0	0	0	0
ACTCGGGATTCTCAGC	alt_5624_new	6	12	11	16	14	12	18	8	20	7
TGGTTTCCTCAACGTG	alt_5624_new	16	39	35	14	42	16	34	32	50	18
ATTTAAAGGGCGGGTG	alt_5624_new	105	137	105	97	113	106	146	83	128	77
TTTGGTCTTCTCTTCA	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TATTGCGCAAGACTAT	alt_5624_new	46	82	48	34	75	40	105	45	119	55
TCCCTCCACCTAGACG	alt_5624_new	31	47	38	20	56	27	52	13	58	30
GTGAATTGCTGTCCGT	alt_5624_new	5	24	20	2	9	10	21	6	23	7
GATGTTCCCATCCACC	alt_5624_new	18	39	20	19	35	24	39	20	39	18
CGTCCGTTACACTCCG	alt_5624_new	35	96	36	25	88	29	99	29	90	28
TATGCGATCCCGTTAG	alt_5624_new	52	89	71	41	78	40	84	54	67	51
ATGCGATCTCCATGTT	alt_5624_new	15	17	25	13	22	18	21	13	16	20
GCCCGAGCGGTGTGAA	alt_5624_new	41	49	42	28	56	34	46	23	57	33
GTCGCATCAGTATACT	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TATGCAAAGCCATCGG	alt_5624_new	14	26	25	14	15	10	23	13	30	10
GGTCTTGAACTAAGAT	alt_5624_new	39	37	44	41	66	41	62	36	56	27
TGGATAACTAAATTGC	alt_5624_new	8	15	5	14	13	7	19	11	18	7
GATTGGCCTACATAGC	alt_5624_new	31	36	32	30	49	39	47	34	41	25
TGGACGAACTGTATTA	alt_5624_new	23	42	27	16	30	19	38	26	36	15
TCTTTATGCCTGACTG	alt_5624_new	69	82	82	65	94	54	92	52	118	59
CATCCCTCCACCAGAG	alt_5624_new	17	62	27	33	53	24	49	24	41	28
TTTTGGCCTCTATTCA	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TCTGCGCACCTGCCTC	alt_5624_new	14	23	23	12	29	19	35	21	32	18
AGTTCCAGCTTATACT	alt_5624_new	25	32	14	24	43	29	41	31	38	36
CTATCTGTACCCTAGT	alt_5624_new	10	21	10	15	7	11	11	3	9	7
GTGTATTATCTCTATT	alt_5624_new	21	20	36	14	36	18	27	16	30	20
TAATATTTATAGCTGC	alt_5624_new	0	0	0	0	0	0	0	0	0	0
AATTTCTCTTCGTACT	alt_5624_new	36	48	35	25	45	30	39	39	41	36
CTGTTAGCTCCCGGAT	alt_5624_new	0	0	0	0	0	0	0	0	0	0
ACGGGTTGCTTCATAC	alt_5624_new	45	71	51	54	63	28	61	55	76	51
AGTCTAGCCGATAATT	alt_5624_new	26	40	35	22	40	17	30	16	32	12
CCTGGCATACAGTGTG	alt_5624_new	67	66	44	34	58	39	73	40	83	39
CATGCGTTTCCCGCCT	alt_5624_new	0	0	0	0	0	0	0	0	0	0
GACTAGGGCTTTATCC	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TATATACCTCGGCAAA	alt_5624_new	27	47	37	34	58	29	50	29	46	42
GATTATATCGACAACG	alt_5624_new	5	6	2	2	5	2	8	0	6	2
CGCATGAGACCAGGTG	alt_5624_new	39	87	71	46	96	54	93	55	92	46
TGCGGTAAGGTACTAC	alt_5624_new	64	93	78	61	61	49	86	41	110	42
GACCTGTGGGGTTCGT	alt_5624_new	33	43	23	29	45	28	45	22	38	22
CAGTATTCAAACTACG	alt_5624_new	93	119	92	95	143	76	140	89	157	72
GCTCTAGCCGCTCGAC	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TACGTACTATGTCTCC	alt_5624_new	0	0	0	0	0	0	0	0	0	0
GTGAGCCCCGGAGAAC	alt_5624_new	8	7	11	6	13	5	5	6	7	4
TCGTAACATTTCTAGA	alt_5624_new	0	0	0	0	0	0	0	0	0	0
CCCATTCACTTCTTTA	alt_5624_new	7	17	5	8	11	3	18	3	11	7
GCATGCGCAAAATAGA	alt_5624_new	56	98	79	50	108	60	110	52	112	45
CTACGTGTAGTACAGA	alt_5624_new	0	0	0	0	0	0	0	0	0	0
GGTGCACTTAGTAGTC	alt_5624_new	30	54	37	34	66	39	58	30	64	18
GTTGCTCAGCCGCCAC	alt_5624_new	12	13	10	14	16	10	22	7	13	9
AGTTTATTATTCTTAA	alt_5624_new	0	0	0	0	0	0	0	0	0	0
TTCCTGGGCTAAGGGA	alt_5624_new	21	46	31	32	40	20	38	23	42	12
CTACGCTCCATAAACG	alt_5624_new	94	158	103	102	201	80	218	90	193	55
ATACGTTCACTGGAGC	alt_5624_new	14	5	24	14	19	12	15	16	18	14
TTAGTATCTCGCCCAT	alt_5624_new	0	0	0	0	0	0	0	0	0	0
GTCATTAAAATTTCCG	alt_5624_new	93	137	123	97	125	93	139	84	157	84
GCCACAGCCCGGTAGT	alt_5624_new	0	0	0	0	0	0	0	0	0	0
CGAAGTGTTGTGTCGC	alt_2031_fdr	25	29	30	26	30	23	24	26	27	26
TCTCTAGATAGTATAG	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
CTTAATTACTGTCGGT	alt_2031_fdr	2	17	7	4	11	8	2	12	7	12
CTCGTTACGATTGTGC	alt_2031_fdr	27	34	34	24	32	27	39	32	45	19
CACCCCGTACCTACAG	alt_2031_fdr	11	67	21	19	82	23	83	13	73	24
CGCCCGGGTGCCCTCA	alt_2031_fdr	22	35	27	24	48	21	39	29	42	26
TGGATTTCCATCCATC	alt_2031_fdr	66	90	107	83	77	79	96	97	103	79
TGCCGTAAGGCTCTTC	alt_2031_fdr	8	2	7	7	8	10	5	10	5	4
TCTTGATTGGGTTCTC	alt_2031_fdr	33	32	42	43	48	27	40	28	49	34
TCTGTACGGCACTAGA	alt_2031_fdr	20	7	11	12	23	27	13	8	12	15
TAAGGACACTTTTCGG	alt_2031_fdr	34	38	52	37	49	31	29	26	36	37
CGTGAAGAGTTCTAGG	alt_2031_fdr	15	19	16	18	24	5	17	9	18	13
AGTCTTAATACTTGGC	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
GCGCTTTTTTGAAGTT	alt_2031_fdr	35	43	37	43	41	33	55	27	45	33
ACGCTTGCTTTTATCG	alt_2031_fdr	28	36	34	33	19	37	22	18	33	19
TTGTACCGGATGTTTT	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
CCGACCTGTTGGCTGC	alt_2031_fdr	7	8	19	13	19	7	14	19	11	15
GTTTCAAGAGGCTATC	alt_2031_fdr	9	12	12	4	11	18	14	11	10	11
GTTTGAGTACTCATTG	alt_2031_fdr	196	242	258	170	264	198	278	159	290	202
CCTATAGAGTTTTCCT	alt_2031_fdr	12	21	26	8	27	12	9	9	17	11
AGTGGTAGGTTTCCCC	alt_2031_fdr	82	89	101	92	91	89	116	67	101	66
CATTCGGGCGTCTGTG	alt_2031_fdr	0	0	3	1	0	0	2	2	0	0
GCGTTTTAATTAGCCA	alt_2031_fdr	19	22	20	11	11	17	14	12	17	10
ACCGCAGCGGAAGCGA	alt_2031_fdr	79	108	130	82	104	86	121	96	107	74
TCAGGCTACTCGGGAT	alt_2031_fdr	38	32	46	29	39	38	55	40	35	41
CTAACCTCAACTGTCC	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCTTATATTAGTT	alt_2031_fdr	14	10	12	14	15	12	26	14	15	14
TGAGGGTCCTGCAGTC	alt_2031_fdr	11	11	16	17	12	16	13	17	17	15
TGGTACATCTTTGACA	alt_2031_fdr	41	40	52	45	44	41	29	34	44	35
CGATATGGGCCACACA	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
GATGTGACGACGCACA	alt_2031_fdr	15	7	8	6	10	5	11	7	10	4
CATTACCACGCGATAG	alt_2031_fdr	46	54	73	47	59	44	69	64	65	56
TCTGCCTGAGAAGATC	alt_2031_fdr	12	22	13	5	12	13	13	11	15	6
AACCAAACCAGCGGCT	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTCGTGGGAAAAA	alt_2031_fdr	35	26	28	24	25	27	31	19	37	26
TTTGGGTTTGAATCCG	alt_2031_fdr	55	64	73	61	71	58	52	52	74	51
ACACATAGCCGCCTAC	alt_2031_fdr	11	4	14	7	8	1	2	8	9	4
ACGATTGTAATCGGTC	alt_2031_fdr	108	109	135	88	101	101	108	118	110	89
GGAACCGTGCGATCTC	alt_2031_fdr	1	4	2	1	2	2	3	3	4	5
GTTAGGTCAGTTGATC	alt_2031_fdr	34	48	48	38	39	28	38	42	46	29
TCGTTTACGCCTTTAG	alt_2031_fdr	53	47	64	52	45	47	53	46	46	49
CCGGAGATGTTTGTGG	alt_2031_fdr	94	124	90	84	132	59	132	91	143	69
GTTTAAAAGTTCCTAT	alt_2031_fdr	85	128	97	88	93	83	117	67	106	82
GGGTGTACCACAATGT	alt_2031_fdr	39	62	42	44	37	27	44	42	53	30
GTCCGTTTTGAACGCT	alt_2031_fdr	21	26	23	21	19	20	26	17	13	19
AGCGATCACTAGCGTT	alt_2031_fdr	222	234	273	226	226	223	266	195	265	218
GGTTTTATAGACTACT	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTATTTTGTCTTA	alt_2031_fdr	17	11	14	14	16	11	9	14	8	13
TCCAATCGGTGAACCC	alt_2031_fdr	5	7	11	6	8	7	6	8	6	15
CCAAGGCTAACCACTT	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
TCTCATGCACTATGGC	alt_2031_fdr	5	3	3	4	4	6	4	3	6	4
GAAACTAGCCGACGCT	alt_2031_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTTCTCTTGAGTA	alt_2031_fdr	27	30	39	23	25	30	34	27	28	31
AGTCGGACACGATGTT	ref_3332_upstream	38	45	54	52	37	35	46	42	29	31
CAACTACAGCGGAAGT	ref_3332_upstream	62	49	54	55	38	36	52	37	63	63
CATCAAGCGTCTAGCT	ref_3332_upstream	37	31	42	34	33	25	37	37	41	30
AGATGCGGGGAGTGGT	ref_3332_upstream	2	1	5	5	4	6	3	0	2	6
ACCTGGCCCTAGAATA	ref_3332_upstream	118	99	144	113	95	100	107	119	107	89
GTAAAACGTGGCTGCA	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGTATCTAATGAT	ref_3332_upstream	15	17	12	10	16	17	18	15	12	15
TTTTATTCATGCGCGT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCGATGAGGTCCCGGT	ref_3332_upstream	29	28	33	37	32	30	23	40	36	38
AACCGACCGGCCATGG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGACGCCTGATCT	ref_3332_upstream	26	33	28	17	18	28	19	19	24	22
AACTCAAACGGGATTA	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTCGAGTGTCGTCTCG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTCTATAGGTCGC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCGGATGGCTTCT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTCCTATTTCATG	ref_3332_upstream	58	60	71	41	76	43	55	38	63	44
CTTGACTCCAATTCCG	ref_3332_upstream	63	93	76	74	66	90	90	69	84	81
CTTAAACATCCCGAAT	ref_3332_upstream	19	14	23	15	10	16	15	12	18	13
TTCATGGTCTGTCGCT	ref_3332_upstream	20	22	22	16	11	18	23	15	16	23
CCAAGATTATACGTGA	ref_3332_upstream	14	20	15	15	21	12	19	10	23	11
CCTTCCGTTGGGTCGG	ref_3332_upstream	33	41	42	37	39	41	44	34	49	37
CAGTGCTCCCATCCCC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
AACGCCGTATGAGAGT	ref_3332_upstream	5	7	4	9	8	6	5	8	3	4
TTCCCACGGGTACGAT	ref_3332_upstream	174	127	147	162	149	116	133	116	112	136
TACCTTTATTCTTGCC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GGTGTAGGTCCGCACC	ref_3332_upstream	94	69	105	100	76	86	90	101	99	80
TGTGTTGATTCGGACT	ref_3332_upstream	10	15	16	18	16	7	12	14	9	12
AGCTATTTTTTCCATT	ref_3332_upstream	49	48	65	50	43	54	43	51	52	49
GCCACTAAGTTTTCTG	ref_3332_upstream	3	6	5	3	4	1	5	5	5	4
ACGAGGGTAATAGTAA	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCAAACGGTATTC	ref_3332_upstream	4	3	8	5	4	3	8	7	5	1
CTAGCCATGAGCTAAC	ref_3332_upstream	4	5	10	10	7	10	10	4	10	5
TATTCACAAGATTGTC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGTAGATGCTTCG	ref_3332_upstream	78	82	79	65	82	68	76	68	73	64
GCTGCATTAGAGGAGC	ref_3332_upstream	8	17	14	9	12	9	10	2	10	9
GGCCCGTGTCCCAGAA	ref_3332_upstream	50	50	71	39	59	52	53	57	56	41
AAATAATCGTTTCGAT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
AGCCTGTTTCGATGTT	ref_3332_upstream	52	66	67	50	60	48	55	41	71	49
GCCGAAGCAATAGTAC	ref_3332_upstream	11	5	17	7	14	13	17	12	13	15
CCAAGCGTCGCAATTG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GGACTTCCTGCGTTCT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGAAGATCTTTTC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGTATGCCCACCA	ref_3332_upstream	69	41	64	77	41	57	54	48	56	45
TCTTAGTGTAACCATC	ref_3332_upstream	12	19	23	29	26	26	26	33	34	19
TGTTTTACCACTACGC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTCTTGGGGTTCT	ref_3332_upstream	11	28	26	31	24	19	26	18	23	18
GCGTTGCGTGCGCCCA	ref_3332_upstream	44	37	46	29	32	38	36	38	34	32
AAGTAGTCATAAGTGA	ref_3332_upstream	27	11	22	25	20	21	20	18	23	14
CAAATTGTCTTTGTGT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
CCGACAATACTGCCGG	ref_3332_upstream	24	13	45	24	14	32	11	36	12	19
TGGCCGGGTACACTTG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTTAGCACGCATG	ref_3332_upstream	20	26	22	26	33	25	33	23	24	25
AGCTTTTATTATGGCG	ref_3332_upstream	95	95	102	92	79	87	82	80	93	78
TTGTGACACCTCATTG	ref_3332_upstream	41	39	53	49	63	39	42	41	45	25
GTTTTACGACGGCTTC	ref_3332_upstream	20	17	16	14	9	16	15	10	9	10
TCGGGTGCCACAACGC	ref_3332_upstream	0	1	4	4	6	5	3	5	3	4
AGCGTCGTCAAGCGTT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GATGCTCAACTATATA	ref_3332_upstream	139	108	162	149	135	124	129	107	139	131
TTGAGGGGCGTACCAG	ref_3332_upstream	13	21	11	18	16	14	21	14	26	14
GCCTTTAAGCATCGGC	ref_3332_upstream	15	16	12	17	21	20	14	13	17	9
CGGATCCTTGAGTTCT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTTGACGCCCGGC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCCCAGTTAAGTG	ref_3332_upstream	10	6	16	11	13	14	11	13	18	21
GGGTTTCGGTTTAACT	ref_3332_upstream	17	14	14	16	12	8	11	8	10	12
GTTACTGATGAAATCT	ref_3332_upstream	42	25	55	28	34	34	30	27	28	30
CAAGGGAATTTAGTGC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCGTGTTCTTCGA	ref_3332_upstream	5	6	8	2	3	2	4	1	6	3
GACCCTGTTTGTGATA	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTCCCTGCCCATG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCACGTCTTATCACGC	ref_3332_upstream	30	18	31	31	31	38	26	18	32	26
GTTAACGCATAATTTA	ref_3332_upstream	40	33	43	38	34	49	41	39	47	38
TAAATTTTAAATTTTA	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
AGACGTAGCTACCCTG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GGGGACATCGTACGCT	ref_3332_upstream	28	30	24	37	29	29	28	25	32	36
ATGTTCTTTTTCATCC	ref_3332_upstream	61	45	62	66	48	48	42	41	44	48
TCCCCATTTCGTTAGT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCAGAGGCAAGCGCTG	alt_3332_upstream	67	56	107	68	57	86	55	62	75	65
CGTTTGGTCACAGGCT	ref_3332_upstream	17	15	18	22	18	13	14	10	11	15
ACTGTACGAGTAGTTT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTCTTCATAGTC	ref_3332_upstream	12	13	10	12	12	7	17	11	20	15
GTCTAGTGGATAATTC	ref_3332_upstream	27	37	28	34	26	33	28	21	29	20
TTTGGTTTTCATCCAA	ref_3332_upstream	180	154	197	200	200	145	190	176	197	196
AATTACGTCTCTGGTA	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GTGATACTTTATTTGG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTTCGTCACGTCC	ref_3332_upstream	45	34	62	37	46	35	41	46	43	34
GTCACTACGTCGACCT	ref_3332_upstream	33	96	34	43	70	43	108	28	100	23
TATTAATTTAGCTCTA	ref_3332_upstream	16	6	3	11	9	6	13	13	10	9
TTTCTAAGCACACTAT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTAAGAGAGTTGT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTCTGATCTATTG	ref_3332_upstream	10	6	5	14	5	11	7	10	6	6
TTTGGGGCGTTTCGGT	ref_3332_upstream	17	15	40	25	14	19	33	20	24	16
GTTCAATTTCCTAGCA	ref_3332_upstream	37	28	37	38	39	42	32	40	40	27
GTAGCGGTTATCGTGA	ref_3332_upstream	18	16	28	17	24	21	15	18	23	14
TAACTGGCTTCCGTTC	alt_3332_upstream	30	23	46	43	19	30	30	32	46	40
TTATTATTCATCGGAA	ref_3332_upstream	29	62	60	43	44	48	41	47	55	37
GCTCCAAAGCCCAATC	ref_3332_upstream	85	92	118	85	113	83	99	110	97	94
AATTATCTTGGCCCAC	ref_3332_upstream	25	32	26	37	53	34	34	26	34	33
CTAATGGTGTACAAAT	ref_3332_upstream	124	141	172	160	130	145	150	140	163	119
TACAAGGCTGCTAGAC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAATTTGCATAAG	ref_3332_upstream	12	12	16	6	11	10	9	16	17	7
GTGCATCGAACATCCA	ref_3332_upstream	18	12	15	12	15	14	14	19	15	13
AACGTAAGAAGGTAGA	ref_3332_upstream	21	21	20	25	27	30	20	22	28	27
TTCTTGAGCTGTAACA	ref_3332_upstream	114	153	142	118	163	131	157	132	173	105
AGTGCGAGTTGTTGCA	ref_3332_upstream	9	4	3	5	4	4	8	4	6	1
GCGGTCCAGGGTAGTA	ref_3332_upstream	19	23	28	25	22	20	37	17	20	18
CATCCCAGTGATGGTT	ref_3332_upstream	100	103	150	98	102	87	108	95	104	111
GCATGCCAATGAACGT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTTCACGAACGTG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCCTACGTATTCT	ref_3332_upstream	35	15	34	29	27	16	15	21	17	24
CTTAAGTATCTTCGGA	ref_3332_upstream	4	5	3	2	2	2	4	6	2	8
CTATCACTCACGGTCA	ref_3332_upstream	26	16	31	22	22	14	17	15	29	22
GCAGGAAAAATAGGGA	alt_3332_upstream	14	12	19	15	29	25	11	16	21	21
CCCCTCAATATATACC	ref_3332_upstream	0	2	4	8	5	2	2	5	1	4
GATTTAGGTGTAAAAA	ref_3332_upstream	2	3	1	1	1	1	4	2	2	0
CCTTTACTTCTGTCCA	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCATTAAACCTTAACA	ref_3332_upstream	22	19	26	26	21	20	22	19	19	32
TTGTGCTTGATGCGGG	ref_3332_upstream	20	37	29	18	27	30	22	21	20	18
TATAGCACTCGTGTCG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACACGACGGTAC	ref_3332_upstream	1	6	6	0	0	4	5	7	6	7
TGTCGTATCCCTGCAT	ref_3332_upstream	67	52	68	71	64	56	48	56	69	49
ACGGTCTGCTCTAGGA	ref_3332_upstream	16	25	18	20	19	16	20	16	17	13
TATTAACACTTGCTAC	ref_3332_upstream	13	18	12	11	10	13	14	12	10	9
TCTTATCCAGCTTGTG	ref_3332_upstream	52	50	58	44	50	43	57	47	52	36
TCTATCGGGTCAGGTT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCACTTACTGCCTCAG	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCACCGATGCCGACCT	ref_3332_upstream	4	17	5	7	14	7	17	8	8	4
TATGCCCTAGAAATTC	ref_3332_upstream	34	29	39	21	28	38	30	21	26	28
TTGGTTAACCCTACAC	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCAGGTCATCATT	ref_3332_upstream	0	0	0	0	0	0	0	0	0	0
TAGGATTTCGTACGCT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TGGCCTGACGACACCT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TCTTAACAGGTATGAT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CGTAGCTATCAGGTCA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CGTTGCTATCAGGTCA	alt_2501_missing	10	1	7	5	2	3	5	10	7	5
TGGTAAATGAACGTGG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CCAACCAGACCGCTTA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TACGTGACGACAGGAG	alt_2501_missing	5	0	11	6	2	5	2	5	4	5
TCTTAAGTAAATTTTT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CTTATAGTGATATGCG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GACGCCTACGCGGTTG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GCAGATCTCCTGCCGT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
AACCCCGGGAATATTC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GCCTACCTCGGCTCCG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GCCCCCGATTAGGGTG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TAGGAGTGTGCTTGAA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
ATAAACCGCAGGAACT	alt_2501_missing	7	12	10	12	9	6	8	8	19	6
TTGTCGGCGCTAACAC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CATAAGCGAACGCACT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TAAGTTATGTCTCTGT	alt_2501_missing	9	4	8	12	7	10	7	7	4	7
CTCTACGAGACGTTGA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GGGTGACGGAGGGCGC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TGCGCGGTGCTTTATC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CTTGCGTGTCGGTGTG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GGGCGCATATGCACGC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GTTGCGCGTTGAAGCT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
ACCGGTTTATGTCTTT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TCCATCAGACCACCCC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CGGGCCGGGTATCTTC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CCCGTACAAACACTGG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TCTGTTGTTTAGTTTA	alt_2501_missing	1	0	0	0	0	0	0	0	0	0
TGAGGACCCTCGAACT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TCCTAAGCTCCACATA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
ATCTTCAGCGCCTTAT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTCGAGAATAAA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GATTTCTGGGCCGACC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TCAGAGTTCATTAAAA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
AGGGGGGGAGATCCGT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TCCATCTTACGTGGCA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ATAGCGTAGGCTATGG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TTATACTACAGTTCAT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TGACAAAATCCTTGGT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CTAGTACTAAACCATC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
ACTTTATATTGTCCTA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TTATGCCTTGTCGCAG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TTCGGAGCAGTCTACC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ACTTCCACACCTACTT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TTTATCACAGATAGCA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TACGTGTCCAGCCCTC	alt_2501_missing	4	2	5	3	1	0	3	3	1	1
ATGCTCTAGGCACGTC	alt_2501_missing	2	3	3	7	1	5	0	1	4	6
ACGAAACCACTTGCGC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TAGTCCGAGTCAGGTT	alt_2501_missing	7	10	7	10	2	9	4	4	3	6
CTTTCTTTACTGTAGG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GCGCTGCCTCATCCCT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TGTCATCATAGTAGTC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CGAAAACCCACGTCCT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TTATAATATAAATAGA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CCCGTTCCGGTTTCGC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CTCAAGTGGTGCTTTG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
AATTGTCGGATCGGTT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GTTGGTTGGATATATT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TATGTTCATCAGCTCT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
GTGACTTATCACGAAC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TGCTGTCATTCACGAC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
AATAGATTTTAATTCC	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TGCATCGTAACTCACT	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CGGCGCTGTCTGGCGA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
ACAGTCAATCGTTCTG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
CTTACGTGTCGGTGTG	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
TATACGGGGACCTGGA	alt_2501_missing	0	0	0	0	0	0	0	0	0	0
AGAGCCGTATTTGTCC	alt_5968_new	14	35	27	12	31	15	18	19	22	17
TTTGCAGGTAAGGCGC	alt_5968_new	0	0	0	0	0	0	0	0	0	0
AGGGCCCGTTATAAAA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CTTGACCTCAGTATAT	alt_5968_new	125	150	133	130	127	109	173	113	190	98
GAAAGCCACGCGGACT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
TAACAACAACACCTAA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
GTGCGTTGGTGGCGAA	alt_5968_new	49	54	48	55	59	53	54	38	53	54
GCCAACACAATATTAC	alt_5968_new	24	46	64	46	63	46	58	35	50	34
CTCCAAGGAAACAGTC	alt_5968_new	5	15	10	6	33	5	25	4	31	6
ATCTCAGGTGTATGCA	alt_5968_new	33	41	37	28	43	40	45	41	40	30
ACGCCGAGAAAACATA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
GTAGTATTTGCAATAG	alt_5968_new	67	78	93	71	93	70	82	65	98	48
TCTTCGCAGAATGCCC	alt_5968_new	40	41	46	41	49	45	36	40	39	46
GGACAATAGAGGACTA	alt_5968_new	18	22	34	19	29	17	11	24	25	22
AATAAAGCTCTCGTTG	alt_5968_new	10	10	2	8	10	11	8	9	12	11
TAAACGGCACTAGCGA	alt_5968_new	40	46	69	38	48	26	41	42	49	43
GTCGTTCGCGGGGTGA	alt_5968_new	9	12	13	9	14	10	10	10	17	11
GAGACTCGTGCCAGTT	alt_5968_new	51	43	50	44	44	50	49	32	47	37
CGCTTCTTCCTTGACC	alt_5968_new	12	13	11	14	17	5	16	16	4	10
TAGTTTTGGGAGCGTT	alt_5968_new	50	38	54	50	56	35	32	45	40	32
GGGTCGTTTCCAAATT	alt_5968_new	4	7	4	13	7	15	9	4	15	6
CCGCACGTAATTAGAA	alt_5968_new	1	4	1	1	1	0	5	0	2	2
GTCGGTGACATGAAAT	alt_5968_new	18	17	34	21	32	19	43	25	17	21
TATACAATGATAAGAT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
AACTGTCGGTTTGGTG	alt_5968_new	5	6	7	3	1	3	4	4	11	5
TTGCTTCGGTTAAGCT	alt_5968_new	10	17	19	15	19	11	13	10	10	11
GAGAGTACAAACGTCG	alt_5968_new	1	2	3	1	1	0	4	0	4	4
ACGGGGTGTAGCCCCT	alt_5968_new	5	5	6	4	2	5	4	3	6	0
TAAACGTTTGTCGGTT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
GTTCACTTAGGCTTGT	alt_5968_new	66	89	104	86	89	72	93	88	102	75
GCTGTTGTCTAGAACA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
TGCGTCGCGAGATCAG	alt_5968_new	7	4	2	9	4	6	9	4	7	3
GCCGGCGGATATATAT	alt_5968_new	44	54	41	45	53	48	64	51	56	34
TCGAAGGCTGCGCGGA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
GTCAAGTAACCTGTAC	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CCTGATTTGACCGATA	alt_5968_new	41	27	46	37	27	36	34	28	28	25
CTGCCGTGCCGCCCCA	alt_5968_new	8	17	18	9	34	13	32	11	26	6
CTCCGTTACTCTTTCG	alt_5968_new	7	19	12	12	9	4	17	6	13	15
GCAGAATTTACGCCTT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
GACATTTCAACCAACG	alt_5968_new	6	9	8	5	4	4	10	8	8	8
TGATGCCTCACGTCTC	alt_5968_new	10	14	14	9	10	9	5	8	11	6
ACAGCGATGCATAGGG	alt_5968_new	300	287	310	271	310	261	319	269	335	260
ATGTTGGATCACTAAT	alt_5968_new	6	5	7	8	14	5	11	10	8	8
TGTCAATTGCGTCCGT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CTCCGACTTACATGTT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
AAGCGGGACTCTTTTT	alt_5968_new	59	39	75	56	41	39	49	39	38	42
GCTCGAGCGTCCGGAA	alt_5968_new	11	8	8	5	8	9	8	8	11	5
TCGCATTACATTCGAT	alt_5968_new	20	25	26	28	32	18	34	17	33	21
TCTACCCTGTAAGGTG	alt_5968_new	18	24	19	18	28	11	31	17	20	7
CAGGACCTTTTCAATT	alt_5968_new	2	8	6	4	11	2	2	7	6	3
AACGCCCGGAGAAAGA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CTGTAGACTATGAGTA	alt_5968_new	12	16	17	16	8	10	15	8	16	11
TTAATGGGCGAAGTCC	alt_5968_new	27	12	17	32	21	30	25	15	27	12
CAGGACGCCACAGGCT	alt_5968_new	9	5	5	3	5	4	7	7	5	10
ATTCGGCTCAGGTCTG	alt_5968_new	41	32	54	39	53	45	44	54	46	24
CATCGATATCCGTCTA	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CCCATATGTTAATCGT	alt_5968_new	24	42	41	28	35	18	44	22	30	21
AGCAATAACCTAATCA	alt_5968_new	54	47	59	33	71	45	55	62	64	46
CCTGTTTCGTGCTGGT	alt_5968_new	64	85	74	73	78	52	49	70	85	48
CGATCGGGAAAAATAC	alt_5968_new	8	11	7	13	13	11	16	8	7	7
CTTTGACTCGTTTTTG	alt_5968_new	28	30	24	29	29	17	37	32	41	28
TACACACGTGCGGAGA	alt_5968_new	19	16	7	9	23	17	18	15	17	12
ACTTTGATATGTGCCG	alt_5968_new	28	51	48	28	37	32	45	36	41	34
TTGTCGAGGATCCTGG	alt_5968_new	15	11	19	4	11	11	7	8	16	5
AAGATTCTGCCTGTAT	alt_5968_new	23	30	38	23	28	21	37	29	25	20
GTTTTATCTAGGGAAC	alt_5968_new	0	0	0	0	0	0	0	0	0	0
ACCAACGTATTCTCAT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CAGGTTGCAGTCTTTG	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CGGGTCTTCTATCCGT	alt_5968_new	8	5	5	9	7	7	5	4	7	9
ACCCTCCCTAGTACGT	alt_5968_new	0	0	0	0	0	0	0	0	0	0
GACTTGCTGGGGATCG	alt_5968_new	11	18	26	22	23	18	16	15	14	12
TTCTCGAGGCAAGGTT	alt_5968_new	13	14	15	11	14	14	11	13	12	11
TTCTCCATCGAAGGAG	alt_5968_new	41	41	30	31	37	33	41	26	33	32
CATTCAAAGAGTCTTT	alt_5968_new	5	8	11	7	8	4	11	11	5	5
GCGCAATTGCTAGCTC	alt_5968_new	0	0	0	0	0	0	0	0	0	0
CGATTCTTATACCAGT	alt_5968_new	3	5	1	2	1	1	5	0	2	0
TTCAGTGATGGCTAGT	alt_5968_new	52	27	46	30	29	35	30	28	34	34
GCATAGTGTCTATTAG	alt_5968_new	123	145	139	106	161	118	156	112	182	104
TTCAGCGTACAAGGTC	alt_5968_new	18	18	25	16	14	9	11	5	9	12
CACGGGTCTGGCACTA	alt_5968_new	0	3	6	4	0	2	1	0	4	5
GTCAAACCAACCGTCG	ref_1787_RC	49	31	68	48	56	47	51	47	59	44
GTGGTTAAGCATTTAG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TAGAGCAACTCATATC	ref_1787_RC	8	6	7	21	16	6	10	9	17	10
ACGAGGGGTCTGAGAT	ref_1787_RC	76	63	101	76	48	71	70	85	58	82
CATGCCGAGCTTCCGT	ref_1787_RC	92	64	129	82	53	91	75	71	77	73
TTGTGGTCCCCTCTCT	ref_1787_RC	34	25	40	29	21	24	27	30	36	26
ATCTGGTTCCTGCTTT	ref_1787_RC	325	265	333	287	256	274	276	300	258	252
TGCCGTACTTTGACCA	ref_1787_RC	22	26	44	29	43	36	29	37	33	32
TTGGAAAACGGCGAAT	ref_1787_RC	24	11	12	16	6	17	5	15	9	15
AGCCCTTACGGGGTAA	ref_1787_RC	233	166	283	239	143	220	192	200	184	185
GCATGTTCGGTTACAG	ref_1787_RC	40	50	67	60	41	51	39	60	48	49
AATCCGCTGTTTTCAT	ref_1787_RC	6	9	21	28	5	18	7	10	13	15
GCATGTGGGGTATCCG	ref_1787_RC	20	39	17	17	18	21	39	18	25	21
TTTGCCGACAGCTCGG	ref_1787_RC	23	14	20	12	20	17	15	18	10	22
CGCCAGCAGGATCCCC	ref_1787_RC	107	62	107	94	59	108	41	88	55	98
TAGTCTAATAATTGTG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GGTTTGGTCTATATTG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GTCCTACACACCTAGA	ref_1787_RC	21	25	35	24	26	26	23	17	36	26
GGAATTGATCTCCTTG	ref_1787_RC	33	23	46	37	31	26	23	31	25	27
CCGGCACGTTCGGGTC	ref_1787_RC	33	22	36	31	24	27	31	24	14	27
TGCCATCGATCTATTG	ref_1787_RC	0	5	2	3	3	2	6	2	6	0
TTCTCCTCAATTTGTG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GTGGGCCTTATTAGAG	ref_1787_RC	28	24	42	35	28	27	16	24	22	26
TCTAAATCACATTTAC	ref_1787_RC	12	12	18	18	5	9	14	13	13	5
CTTATGGAATATAATA	ref_1787_RC	57	41	74	78	37	75	37	65	62	46
TTAATTCAAGCCATGT	ref_1787_RC	10	2	11	5	3	6	8	9	8	4
GACTGCTTTGGGTGCT	ref_1787_RC	13	8	13	17	14	11	10	11	21	13
TTTATAGCTTGCAGGT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
AAAGGGCTCGGATTGA	ref_1787_RC	92	51	99	94	66	81	61	84	70	74
TTTAACACGTGTCTTC	ref_1787_RC	17	13	37	32	14	21	24	19	13	17
GGACTAATGGAAACAG	ref_1787_RC	68	59	93	90	76	62	76	63	55	62
GGCACATCAACTAGCA	ref_1787_RC	95	71	114	93	74	90	84	77	71	80
GTAACTCCGGATCTGG	ref_1787_RC	38	35	50	40	27	37	29	37	43	38
GTTGAACCATTGATCT	ref_1787_RC	39	32	29	35	23	48	22	44	38	40
GAAGGTTCAGCTATCG	ref_1787_RC	1	0	0	2	0	1	0	0	0	0
GTCACTGCTCTTTATC	ref_1787_RC	69	44	74	53	51	58	58	45	56	67
TATACTTGTCTACCCT	ref_1787_RC	9	14	12	12	5	13	7	17	23	8
ACCCGAATATTAATGC	ref_1787_RC	8	6	11	7	6	3	9	4	8	8
CTAGCTCCTTCTGTAT	ref_1787_RC	35	44	45	41	36	36	52	33	34	28
CAAGACCGCATTCCTC	ref_1787_RC	23	25	25	26	16	17	15	26	16	18
TCTCCCAAGCGGCTCG	ref_1787_RC	57	49	49	43	57	54	46	45	54	49
TGTTCCTTGTGCTTTA	ref_1787_RC	29	22	51	32	26	36	35	27	34	18
CAGTGCTTCAGCATAT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCCGGGGTCGGT	ref_1787_RC	87	57	120	65	81	82	73	74	67	66
CCTCAGTATATGTCAG	ref_1787_RC	16	11	24	13	15	10	14	10	7	9
GTCGTGTTGAGGCAGA	ref_1787_RC	31	10	37	39	21	23	21	16	35	22
GTCTGTATCGTACGGC	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GTCGCCTTCTCGGGTC	ref_1787_RC	1	1	0	0	1	2	0	3	1	2
CGAGATTCTGCCATCA	ref_1787_RC	83	133	118	94	149	89	119	77	138	89
CCCGCTGCGCACCCCT	ref_1787_RC	11	16	8	10	14	10	11	11	20	8
GCAACTCGACGCTAAA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GCCATCGTGTCGAGTG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TGCAATTTACAACATT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
ACCTGGTCCGTTTCAG	ref_1787_RC	138	111	153	133	126	109	94	124	142	101
ATTGCCGAGGCTGCTC	ref_1787_RC	4	5	19	5	3	7	4	3	8	10
TTAGTGTGGAGCCCGC	ref_1787_RC	16	8	21	19	25	20	7	19	13	16
GAGTTTGTCTCGGATG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TTTGGAATAGCTTTGT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
CCGTAAGGCACTGGCT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GGGTCGACCTTCGTCC	ref_1787_RC	35	35	30	34	39	31	44	17	36	25
TTCGATCATTATTTGG	ref_1787_RC	32	6	15	22	14	17	18	10	16	19
TGACCTTCTGGCGGAA	ref_1787_RC	7	1	12	4	3	10	2	4	0	4
CCTGTCGCGCAAGAGG	ref_1787_RC	0	2	2	2	0	4	1	0	1	2
TATACGTTTTCTCCAA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TGCACTGTTCGAGAAA	ref_1787_RC	17	9	16	27	15	14	17	11	27	15
CGGATCTTTGTCCCAT	ref_1787_RC	28	19	35	28	23	27	31	33	19	19
ATTTAATGATATATAG	ref_1787_RC	47	43	59	49	28	53	55	27	38	31
ATTTTTACTTCGATGG	ref_1787_RC	194	159	228	219	136	178	140	171	181	178
ATGCCGGAGTTACGCT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
CCGTGTAGTCAGGAGG	ref_1787_RC	22	44	30	22	34	27	60	26	56	14
CGCGGTAAGTTTATTT	ref_1787_RC	868	510	1060	820	596	857	504	782	565	755
GGTCCCCATATTCGAA	ref_1787_RC	144	129	145	147	130	140	137	108	131	112
GTGGCTCTCGGAGGTA	ref_1787_RC	12	4	12	8	7	5	9	9	5	6
TCCAGTATCCTATTTA	ref_1787_RC	15	15	15	14	17	11	11	8	23	5
GGCGATTGCATTTCGT	ref_1787_RC	16	14	19	14	11	17	19	14	6	17
TAGGCTATCAGAGTCT	ref_1787_RC	20	24	52	22	28	43	25	19	35	21
ATAGACTGACGATGTC	ref_1787_RC	31	21	27	41	27	31	24	41	36	15
AAGCCTCGCTGGTTTG	ref_1787_RC	30	31	32	45	36	46	30	19	40	31
GTTGCTTTCCGCTTTC	ref_1787_RC	21	9	14	12	10	12	6	19	14	10
CCTAAGAACCTGTCTA	ref_1787_RC	32	29	56	36	64	14	46	38	47	22
TGCGGCGGAGCGTCAG	ref_1787_RC	32	21	28	23	22	16	11	30	19	26
ACGCTCTTCACGTAAT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
ATCCCATTCGATTGGT	ref_1787_RC	12	7	11	9	14	9	14	9	12	15
CGACCGCTTGAACCCC	ref_1787_RC	5	11	12	5	9	10	6	8	11	9
CACTGTATCGCCGCAT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
CGATGAACTGTGTAAA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TCCCTGTGTTAGGAGA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
AAGTCAGATGCAGTTT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TCTTACTGCTTGGAGG	ref_1787_RC	76	59	103	77	73	86	61	79	84	80
TGAATCGTATTAACAT	ref_1787_RC	62	41	66	64	38	70	41	54	45	77
TGTGCTTAGAACGTTA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
ATTGCGGACTAATGCA	ref_1787_RC	15	11	18	12	16	23	15	15	9	10
TATGTAGACTACTACA	ref_1787_RC	30	28	24	30	14	32	18	20	25	21
CGCTTCCCGATATAAA	ref_1787_RC	31	34	50	48	54	44	43	51	51	42
TCTCGTGTCTCCCCTC	ref_1787_RC	37	46	56	51	47	39	53	44	49	40
TATGTTCCCGGCTTTT	ref_1787_RC	32	30	52	33	40	33	29	35	36	29
ACAATTTCCGTATATT	ref_1787_RC	327	226	388	346	278	282	257	260	281	258
TGTTGAAATGGCCATA	ref_1787_RC	72	49	82	68	48	64	55	54	54	66
AGCAGGCTCTTGCTAA	ref_1787_RC	59	48	64	65	45	44	48	64	45	51
CTGCGCAATTGATTAG	ref_1787_RC	30	19	27	29	21	18	13	24	25	21
TCGGGGACTCGTACTC	ref_1787_RC	15	14	29	22	15	15	21	28	15	22
GGAGTGTCCATCAGTA	ref_1787_RC	86	54	107	95	48	77	57	64	60	69
TCCCTCAACGTTCCTG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TCATTTGATCGTAGAT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TGGTGTGCTATCCACT	ref_1787_RC	38	32	37	38	20	36	29	21	36	22
AACGGAACATTGAGTA	ref_1787_RC	60	68	100	77	54	58	81	76	60	60
ATAAGCTTGATCTGAT	ref_1787_RC	196	150	252	197	129	174	158	189	168	172
ATTATCCCTGTGTGCC	ref_1787_RC	12	10	6	10	12	12	11	10	6	6
TTAGATTGTATGAACT	ref_1787_RC	53	51	64	44	45	36	48	50	43	57
AGAGCGTACATAAACT	ref_1787_RC	57	47	58	67	36	58	38	54	59	41
TCCCGACCCGTGGGCG	ref_1787_RC	19	33	32	32	18	16	31	28	29	20
GCGTGTATCCATACTT	ref_1787_RC	89	54	104	92	90	72	56	103	56	93
GGTTCTAATTGGTCTG	ref_1787_RC	8	6	15	12	10	9	7	10	11	8
CACTTCACGCGAAGTT	ref_1787_RC	20	29	34	32	25	23	30	23	19	26
GCATATTTAGGATCGT	ref_1787_RC	135	81	121	114	87	101	90	119	89	100
CAGTTACGTTTTTGTC	ref_1787_RC	46	50	83	78	46	65	54	64	72	53
TTCAGGGTTCCACAGA	ref_1787_RC	103	63	112	108	70	91	68	94	65	84
TGTCGCAGGTATGTAT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
CTCCAACTATTCTCGA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
CTGTAACGATCGGGTT	ref_1787_RC	35	28	45	33	24	36	31	28	26	35
GCCACTGACCAGCTCC	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
ATTCAAGTCGACCCGC	ref_1787_RC	133	92	164	148	90	131	116	123	111	151
GTCCCTCTCCCCAGAC	ref_1787_RC	6	12	6	8	8	8	6	6	11	5
TTTCCCTGCTCGATTG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
AGAGTGAAATCGTTTT	ref_1787_RC	35	25	39	27	13	38	22	20	24	19
GACCATACCCTAACTT	ref_1787_RC	11	23	28	24	29	29	17	24	14	17
CATTGTAGCAATTTAC	ref_1787_RC	120	93	158	132	90	113	127	130	121	130
GAGCGCTTCTTGTAAG	ref_1787_RC	23	25	37	28	29	32	36	28	40	22
CAGGTGAATATGCATT	ref_1787_RC	19	16	14	15	11	15	13	14	11	11
AGCCTGTGACAGATTT	ref_1787_RC	46	34	50	43	33	35	45	33	32	31
CGCTAGCCCGTATGAG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
AGTTTTTCGCCGGCAC	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
ATATAGTTTTACACCC	ref_1787_RC	22	10	23	12	15	20	22	15	13	19
AGAGAGTTGCCTGGTA	ref_1787_RC	4	1	9	7	3	1	1	6	1	5
GTGAAAGTCCAGCCCG	ref_1787_RC	34	20	47	45	25	23	22	33	28	40
TAGCTGATGCTACAAG	ref_1787_RC	76	51	81	80	65	54	49	69	55	66
CCATGAATATCTAGCC	ref_1787_RC	125	181	143	137	167	108	163	130	175	123
GAGGAGCAATAGAGGG	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TACCACATTATCAAAT	ref_1787_RC	32	28	50	31	23	24	26	32	21	23
TCGGGTTATGGTATCA	ref_1787_RC	32	25	42	39	18	38	33	33	30	33
GCCGTTGCCCTAGCCT	ref_1787_RC	0	0	0	0	1	2	1	0	1	2
GTCCTGTAGCGCTGTC	ref_1787_RC	68	49	66	63	34	50	49	53	35	53
ACTATGCATTCACGGC	ref_1787_RC	119	90	139	140	99	122	104	111	94	127
ATCTATCGGATGAGGG	ref_1787_RC	34	25	32	31	23	33	26	25	33	26
CGACCGACCTTCGCTT	ref_1787_RC	3	10	2	3	15	2	8	4	5	3
TAATGTACTGGCATGT	ref_1787_RC	26	34	29	48	26	25	23	28	30	15
GCGGGTTTTAATCGGA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TCCGTGCGATTAGCGG	ref_1787_RC	14	13	20	20	17	16	7	20	12	16
CCTGATAGTCAACTAT	ref_1787_RC	137	103	147	96	91	97	128	97	89	118
GCGTAAGAGCTATGGA	ref_1787_RC	55	32	58	47	40	57	37	62	41	42
AGTAGTTTTTGCGACT	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GGCCTTCTACGACGCA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
TTGTCGGGTACTAAGC	ref_1787_RC	20	27	31	34	22	25	16	23	42	30
ATTCGGTGGGCGGTAT	ref_1787_RC	71	62	103	84	62	65	73	61	76	76
ATGTGAAGGCAACGTT	ref_1787_RC	53	37	65	60	40	37	40	51	51	38
ATCTGGACAAGGATAG	ref_1787_RC	21	17	30	16	10	14	5	15	19	7
ACCGTCTGGAGTGTAC	ref_1787_RC	78	66	83	86	76	59	80	61	68	57
ACGCCAATCTCCAGTC	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
ACCCGTTCCACGTTAA	ref_1787_RC	0	0	0	0	0	0	0	0	0	0
GACGCAATGTTATTAT	ref_1787_RC	67	50	64	83	64	63	49	62	69	63
CTGACTTTTAAAGTGG	ref_1787_RC	54	59	77	50	57	69	52	53	70	55
TGTAACAATACCATTC	ref_1787_RC	29	28	28	33	27	42	14	24	20	20
TCTGACTTCAGGTTTT	ref_1787_RC	15	21	36	16	21	21	25	17	18	25
GGGTCGACGATTATTT	ref_1787_RC	166	121	207	190	125	155	142	124	137	140
CTCTAACGTCTCCAAA	ref_1787_RC	14	14	34	16	18	26	22	14	13	11
CTGCCGGGCGATGAAG	ref_1787_RC	38	32	45	39	36	19	32	39	35	36
TATGCGTCCATCCACC	ref_1787_RC	31	14	25	31	31	36	28	32	29	34
TTCGGAGATCAGCTAT	ref_1787_RC	326	201	352	320	239	260	225	307	256	292
GTCTGGCACGCTTATG	ref_1787_RC	40	44	53	48	40	46	37	45	50	44
TCTGGGTCCATACCCG	ref_1787_RC	98	54	98	90	73	96	48	76	78	85
CCACGGCTTAGAGAAT	ref_1787_RC	34	27	64	52	51	43	30	37	33	32
GAGTATGATTCTAAGG	ref_1787_RC	48	34	45	42	36	43	22	38	31	35
AGGACCGGGCTGACTG	ref_1787_RC	14	4	9	11	15	12	8	12	8	6
GTTTTATACGATGCTG	ref_5125_reverse	69	60	75	78	58	55	83	57	69	68
GCCGGCTTGCTGTAAG	ref_5125_reverse	122	80	179	133	112	128	124	112	123	110
TGTCATTTCACGTGGG	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GCACCGTCTGACGTGG	ref_5125_reverse	6	1	8	5	1	4	4	5	4	3
ATAACGGCTTGCTAAG	ref_5125_reverse	57	35	64	33	30	45	45	70	27	46
GTTCCCTGACCGGGCA	ref_5125_reverse	1	1	6	2	4	7	6	4	5	1
TCAATTCGTTGGGCTG	ref_5125_reverse	0	2	1	5	4	8	0	2	1	3
TAAGCTTTAACTCACA	ref_5125_reverse	58	59	78	74	44	69	48	58	37	68
TGGTCTCACTCAAATA	ref_5125_reverse	44	41	65	32	30	51	47	41	47	38
AAGATTCATGAGAGCA	ref_5125_reverse	71	50	46	37	52	46	43	30	47	54
GAGGCGAGGATCGGCG	ref_5125_reverse	54	56	94	79	49	101	44	80	45	66
CGAGCTACCGTAGTCA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAGACAAGTGCTA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
AAATGTTGGGATTTTC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGGTGGACCCGGC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCAACATCAGATA	ref_5125_reverse	60	54	68	72	35	58	53	60	47	58
GCCTAGTTGGTACTTG	ref_5125_reverse	66	62	96	73	64	56	56	51	65	53
CCCTCGTTCGTAAATA	ref_5125_reverse	17	17	36	33	24	28	14	22	18	31
TATATGGTGCTACGAA	ref_5125_reverse	85	76	107	100	72	99	76	92	83	86
TATTATGTAGAATTCG	ref_5125_reverse	19	9	31	17	10	17	7	11	10	17
TTGCACGACCATCTTT	ref_5125_reverse	40	30	49	39	24	36	21	31	31	30
ATCTGAGTAGGCAGAC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGCTCGGGCACTA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GTATCGGCGACTGGTC	ref_5125_reverse	12	27	19	9	19	9	24	11	20	6
TATAAATTGCCTGGAT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GATTATGAGGCTACAA	ref_5125_reverse	25	21	34	19	21	19	23	22	19	15
GCACGCACTGCGGGGT	ref_5125_reverse	36	22	42	29	29	35	17	32	23	30
CCTACATTGCGTGCCG	ref_5125_reverse	41	64	33	36	57	25	70	27	57	37
AAACATTATGCAAATT	ref_5125_reverse	48	33	64	60	19	46	33	54	50	41
CCAACCGCGCAAATTA	ref_5125_reverse	0	1	2	0	1	0	4	0	0	0
GCGAGTAGAATAGTAT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GGATAAGTCAGATCAT	ref_5125_reverse	29	23	38	33	37	21	39	22	30	30
GATTTCCCTATGCGTC	ref_5125_reverse	34	29	49	57	34	39	46	42	31	36
CCGCGTCTCAGCTTTC	ref_5125_reverse	43	56	53	49	25	44	55	41	65	36
TGCTAACAGGCTATGT	ref_5125_reverse	10	5	21	6	10	23	8	13	7	10
ACAAGCCAGCTTAATT	ref_5125_reverse	9	6	13	17	10	11	10	15	14	6
AGGATTCACTCCTCTA	ref_5125_reverse	4	1	1	1	2	5	6	3	6	3
AGTTCGTAGTACATGC	ref_5125_reverse	16	15	25	18	25	19	19	14	15	7
CTTACATCTGAGCGTA	ref_5125_reverse	139	102	154	134	102	116	117	124	127	114
CGCCCTGCGCGCTTTT	ref_5125_reverse	33	22	36	42	23	33	14	25	24	27
GCGGCTAATCCACATC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GTCAACTAGGGTTGTT	ref_5125_reverse	21	25	42	28	27	36	31	21	38	34
ATGTCTGCATTACTGT	ref_5125_reverse	18	11	13	11	12	14	8	9	9	10
TTGGGATCATTCTATT	ref_5125_reverse	170	130	226	142	130	162	124	143	152	147
TGTTTATATTTCGAAT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTAGCTACCGCGG	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGGATACCATTCA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTCCATAGTCCGT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGTACTTACGGTT	ref_5125_reverse	19	69	19	22	67	20	70	9	66	14
AACTATTACATACTGT	ref_5125_reverse	13	17	18	20	12	12	19	24	6	15
GGGGCATACGCGGCCG	ref_5125_reverse	43	28	48	47	34	50	30	39	24	33
TCTCCGGTATCATGTA	ref_5125_reverse	22	11	35	18	16	16	24	25	16	22
CACGGAGAGTATTTTG	ref_5125_reverse	4	12	12	6	8	5	9	6	12	12
TGGCCTCAAATTCAGT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTGTTCACTTTCT	ref_5125_reverse	66	52	122	89	62	65	68	65	48	61
TTAGCAATATAGTTGC	ref_5125_reverse	38	28	38	27	19	30	38	36	18	26
TTAGTTAACGCACTAG	ref_5125_reverse	162	108	180	169	125	155	125	150	156	142
CTCCGGTTGTTGCGCA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCTCAGCCCGGTA	ref_5125_reverse	3	7	6	3	7	6	4	3	3	5
TTCACATTCGATACGT	ref_5125_reverse	44	35	52	47	38	47	35	39	26	42
ACTACAGGCTCATCAT	ref_5125_reverse	43	39	54	49	27	45	40	45	38	34
TAATTCGTCTTTTTGG	ref_5125_reverse	97	53	138	125	46	111	67	97	66	112
GGCGCGCCCGGCTTCT	ref_5125_reverse	116	49	123	95	59	91	48	94	57	87
TGAAAGCCACGGTAAT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CCATCATATTGAAAGC	ref_5125_reverse	4	7	4	0	0	4	0	2	2	2
CACACGCTATACTAGA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TGTCAGTGGTGTGTGT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCACGGTGGCTAT	ref_5125_reverse	65	44	42	29	40	45	30	56	42	45
TTATTCCCTTTCTACG	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTGTTTCCCCGGG	ref_5125_reverse	5	8	3	4	4	4	8	6	6	6
TAGGTCGATCTATAAC	ref_5125_reverse	7	26	9	6	15	10	21	11	19	8
GGCCGCCCTATGTGAG	alt_5125_reverse	50	43	61	47	28	34	30	45	54	27
ACTCCGTGCCGCCCCT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CCACAGGTAATTTGTG	ref_5125_reverse	16	49	32	30	51	14	44	24	39	21
GTACTTGCATCCGATG	ref_5125_reverse	26	30	46	40	38	32	34	30	30	35
AAGCAATGTCCCGGAT	ref_5125_reverse	128	58	136	97	91	105	84	98	78	110
TAACGTTCCTCAGCTC	ref_5125_reverse	24	15	23	16	19	16	21	20	16	9
TTCCATGTGAGGATAG	alt_5125_reverse	86	84	127	98	83	87	69	79	66	81
ATCAGCACAAGCGGAT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TCTTATTTAAGCTCAT	ref_5125_reverse	13	18	4	11	13	9	12	9	9	15
TCGTATCTCAACTCGC	ref_5125_reverse	29	65	48	47	80	44	50	41	73	46
TATTAGGTCTCCTCAA	ref_5125_reverse	12	5	15	8	10	10	9	11	7	8
CTCTTTGACTCCATAC	ref_5125_reverse	34	33	39	33	23	32	30	30	44	24
ATGCCGTAGCTTACAA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCCCACACGGCCA	ref_5125_reverse	18	14	34	30	19	25	13	27	18	23
GTGTACCACATTCGAG	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGTGTAGTCTTGT	alt_5125_reverse	67	58	75	63	51	65	66	67	68	70
TACTCACATAATGCCA	ref_5125_reverse	31	26	54	46	26	38	23	40	25	28
ATCTTGGTTGTCCAGA	ref_5125_reverse	52	43	56	56	64	53	41	62	43	47
AACTTTCTCAATATTT	ref_5125_reverse	52	30	73	45	31	47	29	60	38	58
CGACCGAAGTAGTTGG	ref_5125_reverse	134	149	146	165	170	133	151	131	154	115
GGGCCGGCTGTACTAT	ref_5125_reverse	47	32	48	37	36	37	33	33	28	27
TTAACCCTAAATCAAA	ref_5125_reverse	17	14	21	23	7	9	11	14	15	13
CTCGTTAGCCATGAGA	ref_5125_reverse	13	16	18	21	20	16	15	14	12	19
CCTCAATTGCACGTGG	ref_5125_reverse	40	80	48	51	54	43	74	29	79	43
GGCGTATTGCGTTTTC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
AGTCAGTACGCGCACA	ref_5125_reverse	3	12	10	8	8	8	13	4	6	4
TTGGCCTCGCCGGCCC	ref_5125_reverse	32	29	46	37	29	37	31	38	31	22
ACTCAAGCGCGTCTTT	ref_5125_reverse	176	137	207	171	120	152	172	169	151	174
ACCTATAGCAATTGCG	ref_5125_reverse	7	12	14	8	11	8	10	18	21	13
TACAGGAATCTTATTC	ref_5125_reverse	81	72	127	89	80	95	84	74	82	79
GAACGCCTGGTCCAGG	ref_5125_reverse	43	35	39	32	26	38	24	32	19	40
AGTGTCTTGGGCATGC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TCGGAAGCAGGAATCA	ref_5125_reverse	37	21	48	41	20	42	23	30	25	34
TTATCCTCATCATGGC	ref_5125_reverse	56	35	76	56	38	59	29	53	48	44
TCCAGACATCACCTCC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCCTTGAGGTGAC	ref_5125_reverse	55	41	77	70	51	57	48	60	53	67
ACATGCCTTGACACTA	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAACCCCATCGAA	ref_5125_reverse	10	11	14	15	4	9	6	10	13	6
GTCCCGTTCGTTGTTA	ref_5125_reverse	24	28	45	35	24	25	20	28	31	34
GATAAATCTAGAACAG	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGTATTTGATCAT	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGTTTAAAGAACC	ref_5125_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCGTCTGGTTATA	ref_5832_new	54	96	77	59	108	56	111	39	115	34
ACGCGGTCATCGAATG	ref_5832_new	67	112	82	57	130	50	162	55	158	69
ATACTCACTGGCGAGG	ref_5832_new	0	0	0	0	0	0	0	0	0	0
GTCGTGGTCCCCTGTA	ref_5832_new	0	0	0	0	0	0	0	0	0	0
CGGATCGACGGATCAG	ref_5832_new	40	27	38	29	40	52	35	26	36	24
TCAAGCTGCTCATCCT	ref_5832_new	36	17	32	24	27	21	19	25	29	18
TCGGTTTTTCACGTTA	ref_5832_new	2	3	2	4	3	2	6	6	4	7
AGACACGACTATGGAA	ref_5832_new	0	0	0	0	0	0	0	0	0	0
AATCAAGACCAGACTT	ref_5832_new	35	25	25	20	27	21	18	21	30	19
GGTTTGTGGCAGCTAC	ref_5832_new	86	119	107	78	113	85	128	74	134	86
TTTCTTCTTACGTCCT	ref_5832_new	84	61	75	48	59	65	67	53	58	52
GTGTAACTTCGACGTT	ref_5832_new	7	9	12	5	6	3	7	9	12	8
CAGTAATGCGACGATG	ref_5832_new	19	25	21	35	20	15	25	21	25	17
GTTCAGGATCAAGTCT	ref_5832_new	126	105	97	132	129	135	121	107	163	105
GCGGACAGCAATTTGG	ref_5832_new	2	3	8	8	6	10	2	3	6	5
AATCGGGGCATTTCAC	ref_5832_new	0	0	0	0	0	0	0	0	0	0
CCGGCTCCATAGGGAC	ref_5832_new	24	51	36	38	49	28	49	27	63	27
GTTTGTTCTCGATTAC	ref_5832_new	20	7	20	14	23	15	21	12	18	18
AGGAGTTTCGCCGGCC	ref_5832_new	17	8	14	7	6	13	8	8	13	11
GATCGTCTATTTACCA	ref_5832_new	12	17	12	11	7	10	15	7	10	3
GGCCTTAACGGCAGAC	ref_5832_new	1	4	3	5	3	4	2	3	1	3
AACGCCGCCTAATTAT	ref_5832_new	5	13	23	11	16	9	19	8	23	11
CCTGGTCTCGGGTGCC	ref_5832_new	3	8	7	0	9	7	11	6	16	6
TTTTTAGTCTGTTCAG	ref_5832_new	1	3	0	3	7	3	1	2	2	2
TCTTTTGGGTTCTTGA	ref_5832_new	44	45	49	42	47	29	32	39	46	35
CTGTAGAGCTCCATGT	ref_5832_new	41	52	42	33	49	35	49	42	44	29
TACAGGACGTGTTTTG	ref_5832_new	42	38	41	36	42	29	36	31	34	22
TGGATATCGACCCCTC	ref_5832_new	1	0	3	1	2	1	2	1	1	3
TTAGCCTCGTCTAAGG	ref_5832_new	14	18	14	8	17	6	28	14	30	20
GCTTCTTGCTTTAGCT	ref_5832_new	0	0	0	0	0	0	0	0	0	0
AAAGTTCACAAACGAT	ref_5832_new	59	45	62	48	58	51	51	57	48	48
TTTAACTCGTCGCTAT	ref_5832_new	22	21	28	12	18	16	20	14	16	9
ACAATAGTTGCGACAC	ref_5832_new	4	14	10	6	10	9	14	9	14	5
GAGTCGGGTTTATGCG	ref_5832_new	3	0	1	0	4	1	0	5	4	1
TGCAATGCGCCGATTG	ref_5832_new	18	23	29	21	30	30	29	20	29	20
TTTACCATATGGTACG	ref_5832_new	26	37	31	17	22	16	19	26	25	15
AATTATGTTCATTTGG	ref_5832_new	35	33	29	18	22	24	24	31	32	18
CTAGAACCACAGCCGG	ref_5832_new	8	15	12	8	20	9	32	4	16	8
TCGTGACCCCTTTATG	ref_5832_new	54	36	49	30	44	43	50	37	47	40
CGCGGTCGCACTGGCG	ref_5832_new	14	96	26	16	88	14	112	20	104	17
TGTGTTTTTTGCTCTT	ref_5832_new	4	3	14	8	6	5	6	11	9	4
ACCAATTAGATCTTTC	ref_5832_new	0	0	0	0	0	0	0	0	0	0
TATTGTCCCGACTGTT	ref_5832_new	40	35	39	36	36	36	52	31	47	32
CATGTAGAGTGGTTTC	ref_5832_new	6	5	11	9	8	6	4	9	12	2
CCTAACGTGCCCTCTG	alt_5832_new	1	5	2	4	7	1	7	1	10	1
TTGGCGCCAAATTGGC	ref_5832_new	5	7	6	14	13	4	10	9	12	9
AACGGCTAAAATTTGT	ref_5832_new	44	45	47	40	40	29	49	36	53	21
GTTTAAGCTAACAGAT	ref_5832_new	27	28	32	29	17	25	30	17	27	17
GATCTTGGCACTCCTG	ref_5832_new	0	0	0	0	0	0	0	0	0	0
TTTATCTGGGTCTACC	ref_5832_new	0	0	0	0	0	0	0	0	0	0
CTACTTTACTTCCCTC	ref_5832_new	0	0	0	0	0	0	0	0	0	0
AATAACTTTGTAATCT	ref_5832_new	26	40	23	39	21	24	24	15	26	39
CAGGGCTGATCTCTTT	ref_5832_new	0	0	0	0	0	0	0	0	0	0
CATTTTTCGTTCTATA	alt_5832_new	32	32	35	29	41	19	49	23	29	20
TAGAGCATCTCTTCCC	ref_5832_new	44	28	38	42	48	33	46	36	47	45
TATTGTTAAACTAGGC	ref_5832_new	36	34	54	37	47	49	61	36	59	25
CCTCCGCTCCTCGGAT	ref_5832_new	0	0	0	0	0	0	0	0	0	0
TTTCCGCTTTCTGTAG	ref_5832_new	15	17	19	6	27	15	15	11	17	5
ACAACAAGGGCCATAG	ref_5832_new	18	29	22	11	14	22	42	13	26	14
TCCTGTCGTTGTTCAC	ref_5832_new	0	0	0	0	0	0	0	0	0	0
GGTCCGAGCTCTCATA	ref_5832_new	21	35	31	13	40	23	34	17	38	21
GGAGATTCAGGTGCGG	ref_5832_new	41	53	61	43	54	63	59	55	54	34
TGTGCACTTATTCACG	ref_5832_new	15	12	14	5	4	5	11	9	9	10
GTGAATGTTAATAATA	ref_5832_new	23	24	20	20	17	17	23	24	32	17
AGCCATCGAGGCATTA	ref_5832_new	0	0	0	0	0	0	0	0	0	0
TGCATCCTGGGTCGCA	ref_5832_new	0	0	0	0	0	0	0	0	0	0
TGAGCGTTGGGATACA	ref_5832_new	25	50	35	33	30	23	41	35	47	28
AGCGGGTGGAGCAAGA	ref_5832_new	113	106	142	115	112	91	135	68	139	99
CTCTTGCCACTTCGAG	ref_5832_new	3	10	7	3	12	11	9	10	17	6
TATCGTCTCCTTTGAT	ref_5832_new	0	0	0	0	0	0	0	0	0	0
TAAGCCTTGATACTTC	ref_5832_new	7	6	7	2	4	5	2	3	10	4
GTTGCCAGTTAAACGT	ref_5832_new	20	24	31	17	17	10	19	12	23	19
TATCATATTTGCCACG	ref_5832_new	9	17	16	11	25	7	21	12	13	12
TGACTGCACTTACGTG	ref_5832_new	11	14	8	13	16	7	8	11	7	4
TGCTTAGGTATTTTGC	ref_5832_new	33	36	35	47	60	27	35	22	45	23
GTTTTGTGATGTTTCA	ref_5832_new	0	0	0	0	0	0	0	0	0	0
CCAGGCTTTCCGGCTA	ref_5832_new	9	8	10	5	5	7	12	11	14	8
TCATAATGGTGGTGCT	ref_5832_new	0	0	0	0	0	0	0	0	0	0
TGGCACTTGTAATCAT	ref_5950_new	17	10	10	15	18	22	28	10	26	11
ACTTCGGTCCTAGTGT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TCCTAGTGGCCCGAGC	ref_5950_new	17	25	19	36	27	28	28	22	37	15
ACAGGCCTTGACCTGC	ref_5950_new	22	43	28	20	32	16	42	25	31	20
GTGGTAAGCTCCATTA	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GTTACGCTGTTCCGCC	ref_5950_new	5	8	14	7	13	6	5	2	13	5
GAGTTCTTCTATTCGG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TATGACGGAGAAATGG	ref_5950_new	6	1	11	1	4	2	5	3	2	3
GTCCTCAGCTACCCTG	ref_5950_new	7	14	11	7	25	12	20	13	16	10
CTATTGAAAATCCTCA	ref_5950_new	64	60	59	55	62	65	79	44	79	43
TGTGAAGCGCATCTTT	ref_5950_new	14	28	16	23	27	20	31	18	18	6
CTCTCGGCTAGACAAA	ref_5950_new	31	34	40	26	50	42	45	32	39	27
GAGACTTTTGCTCTTG	ref_5950_new	21	16	25	10	15	14	14	15	10	9
GGGATGCACTAGCCAT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GACGCTCATGTATACC	ref_5950_new	8	10	8	9	9	11	13	5	7	4
CGTGCGACCCCTCGAA	ref_5950_new	2	3	1	6	5	4	7	1	8	1
GATCTGATAGTATGGC	ref_5950_new	7	17	14	14	11	8	12	7	15	12
TTGGCCACAGGACGGG	ref_5950_new	15	22	9	13	27	12	17	12	14	11
ACGGCAAACATGAAGG	ref_5950_new	4	1	1	0	0	0	1	1	0	1
AGGATCGGTTTTCTCG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TTCCATACATGGTTCA	ref_5950_new	9	17	11	12	9	5	13	8	13	5
GACTAACCTTGCCTCT	ref_5950_new	10	25	14	15	16	15	16	14	17	12
ATTCATGTGGATTTTC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CCCGCGCTATGACTAT	ref_5950_new	38	66	80	48	63	56	67	36	61	35
CTGCGTTATCACCGGA	ref_5950_new	52	79	81	75	76	67	98	62	98	45
ACTCGGCATTCGGATA	ref_5950_new	10	7	12	8	12	8	12	14	16	10
GGTTTGCCTTCACGCA	ref_5950_new	8	13	8	9	14	7	10	10	16	10
ATGAATACCGCTTCCT	ref_5950_new	27	37	45	40	56	33	61	24	40	38
TGACCAGATAAACGAC	ref_5950_new	43	44	39	35	55	30	54	35	48	25
CTGGAATAGTTAGTTC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CATGATTATATTTGTC	ref_5950_new	41	34	54	41	38	32	33	38	36	39
AAGCCCTTGTTATAGT	ref_5950_new	5	11	11	10	18	8	23	6	24	10
AAATCAGGGCTGACCA	ref_5950_new	0	0	0	0	0	0	0	0	0	0
ACATGTGCAATGAGTA	ref_5950_new	5	6	0	6	12	7	11	7	5	6
GCAGTCCGTGTAACTT	ref_5950_new	50	68	58	40	56	53	60	50	68	47
AACTAGCTACGAGCAC	ref_5950_new	39	74	63	33	72	29	75	40	75	48
TATGGTATGGAATTTG	ref_5950_new	8	12	19	19	15	16	14	9	16	9
CGACTGTAAGATACGG	ref_5950_new	46	59	48	36	89	57	69	38	96	42
CGCGCGTCAATGGTCC	ref_5950_new	2	0	2	4	2	3	6	3	3	0
GTCTTTGCCTCACCAA	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CTGAGTGACTGGGAAT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TATTACCCCAGAGTGC	ref_5950_new	5	29	8	6	13	10	23	5	26	5
TTAGAAACCATCCAGC	ref_5950_new	1	6	6	3	6	7	8	7	8	4
CCATGAGTGCGTTTTG	ref_5950_new	6	19	19	20	18	15	26	10	22	6
ACATGCCGGTCTCGTA	ref_5950_new	3	7	17	13	19	14	16	8	18	7
TCGCATTTTATTTGCC	ref_5950_new	23	36	34	11	28	21	41	31	39	18
AGGCCCTGCCTAATGC	ref_5950_new	9	20	19	13	20	10	14	8	20	12
ACTTATCAAGACGCAT	ref_5950_new	0	1	0	1	0	0	0	1	1	1
ATCCGGTTTAGCGGTC	ref_5950_new	6	4	3	4	7	5	7	2	4	4
CCGCCCCGACTCAAGC	ref_5950_new	3	10	12	10	8	5	6	1	17	5
ACTAATTGTTCCTCGG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CTCCCGAACGCTACTC	ref_5950_new	8	31	7	7	26	7	30	9	27	6
GTCAGCAGGCGGATTT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TACTTCTCTGAACACT	ref_5950_new	0	0	1	0	2	0	1	0	2	1
CTGCTCATCGCGTATG	ref_5950_new	5	18	9	10	20	4	19	12	16	5
TTCTCATCGCCAACCA	ref_5950_new	48	46	40	41	53	24	51	38	59	33
CGAGGCTTCTAATATC	ref_5950_new	2	3	2	0	6	2	3	2	2	1
AGTTAGCGTTTAGGAT	ref_5950_new	12	28	13	9	10	9	24	11	29	7
TCTGTCCTGGAGTCTG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GGCTCATGACAGCGCC	ref_5950_new	8	23	7	12	21	9	17	8	24	13
GTGATTTGTGATTCAA	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GTGTGTTATTGGCTTC	ref_5950_new	2	8	7	3	4	7	6	1	3	3
TTAGTACTTGTTGTTT	ref_5950_new	11	22	11	11	16	8	9	16	23	10
CCTCTCGTCGGGATCA	ref_5950_new	14	19	14	17	23	6	19	12	25	12
GACCGCCTGTCCGTGG	ref_5950_new	25	26	33	25	31	21	22	20	33	28
TTTGGCCACTCTTGTT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
ATTATCGCATGACTGG	ref_5950_new	79	120	126	79	135	76	119	77	121	71
CTATGGCATGTCCGCT	ref_5950_new	1	6	14	7	10	5	10	5	11	5
CCGTCCCTCCGTTTGG	ref_5950_new	11	50	21	21	55	15	55	18	46	13
TGGTGGGTTAGCGGTG	ref_5950_new	31	38	35	21	27	26	43	22	31	12
CCGTTTCCCATGGGGG	ref_5950_new	22	56	41	37	51	37	29	36	44	28
GACCCAACGTGACCGC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
ATTTCGCAGGCATTAG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GGCCATTGTATCACAT	ref_5950_new	88	129	144	111	116	103	131	92	139	76
ATTTACTTACTGGCCC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CCTGGTATCCGCTGTA	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GGGGCTTATGCTGTAT	ref_5950_new	10	13	4	5	6	9	11	7	12	6
GAGCGGCCTCGTAAGA	ref_5950_new	7	11	10	9	9	5	9	10	11	14
GAGTCTAGCTCTCACC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CCCATTCAATCTAGAA	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CTCCATCGCTCCCTCT	ref_5950_new	20	70	34	35	76	25	88	29	68	27
GACAATCGTTTTTTGT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CTCACAGTGCGCGGCT	ref_5950_new	22	38	19	11	40	24	37	18	39	14
CGATTTGCCTCAAGAT	ref_5950_new	36	52	45	46	47	33	70	39	64	29
CAGCTTTAATTGGCAG	ref_5950_new	78	108	69	62	92	66	96	62	95	66
TCCCCTCTGCTTGCTC	ref_5950_new	4	30	10	3	30	5	32	3	26	10
CGCTTCGCTAGCGGCC	ref_5950_new	15	12	12	13	16	26	20	19	16	16
CTAGATTGCAACCTGG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TTCTTGTACTGGTGGC	ref_5950_new	1	6	3	7	6	5	6	3	5	4
ACACAATGATCTAAAC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GAACGCCATTTGATCT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TTATTTTGTAGTCCCG	ref_5950_new	13	9	16	10	14	5	10	11	20	13
AATTAATCTCAACGAG	ref_5950_new	15	15	21	17	24	15	17	17	23	15
ATTTGTCTCAGCATTT	ref_5950_new	9	11	9	10	10	10	10	6	19	11
ACATCGGTGTATCAGG	ref_5950_new	18	27	34	24	21	19	26	27	33	26
ATCGTTAACGTAGCAC	ref_5950_new	11	4	5	9	11	9	8	9	7	7
CCTTGGTTTTGACCTT	ref_5950_new	21	21	28	17	27	25	31	19	24	18
TGTTCCATCCGATTAA	ref_5950_new	15	31	44	31	52	25	27	36	39	28
TCCGCCCATAATTTAC	ref_5950_new	22	40	29	19	34	23	50	28	41	14
ATGCGCGGAAGCCTTG	ref_5950_new	8	10	9	6	7	7	10	3	11	5
GCGCGAATTCCCGTTG	ref_5950_new	29	31	23	31	33	22	46	26	22	32
GCTAGCCATTTAAGCC	ref_5950_new	9	43	13	15	38	9	42	11	40	14
GATACAGGTGTATGGT	ref_5950_new	1	3	1	3	4	3	1	0	3	2
TCAGTTATATGTCTTT	ref_5950_new	13	10	15	6	15	5	12	5	16	11
TCCAACTACTTTAGCG	ref_5950_new	10	23	14	16	29	12	29	12	24	12
CCCCGCGTAAAATTCT	ref_5950_new	10	22	15	20	26	18	18	8	37	16
ATTCCCAGGTTAGCGG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CGGGCACATTTGGGCG	ref_5950_new	35	61	35	36	30	27	61	32	40	37
ATGATGGACAGGGTCA	ref_5950_new	14	23	25	7	22	13	27	17	26	18
GAGTCCACCGTGTATT	ref_5950_new	17	34	38	20	34	20	25	15	37	19
GGTGTGATCGCGGTCC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
CAGTTACGATCCCGTA	ref_5950_new	9	9	3	6	5	4	7	2	6	5
CCATGTTCTCCAGCTT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TATGTTATTAACCCTT	ref_5950_new	7	8	4	6	7	5	3	6	9	1
CGATAGGGTCTGTGGC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TGTGGCGGGGTTCCTC	ref_5950_new	27	63	53	57	49	41	64	28	52	34
TTACACTTCGTCTAAT	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TATTCTTTGGCGGCTC	ref_5950_new	0	0	0	0	0	0	0	0	0	0
GCCGTCGCACCGGAGT	ref_5950_new	20	25	22	15	30	19	24	10	33	16
GTAGCTGCCGAGGTCG	ref_5950_new	0	0	0	0	0	0	0	0	0	0
TTCACGACGGTCGTCA	ref_5950_new	42	83	52	60	72	48	76	47	95	50
CCCAATAACGCCTCTA	ref_5950_new	94	90	118	104	129	114	132	79	122	90
ACATCCTGGCAAATGA	ref_5950_new	0	0	0	0	0	0	0	0	0	0
AGTAGGTCTTCTGTAG	ref_5950_new	14	16	26	16	19	6	17	11	24	11
ATTGATGCGGACATCG	ref_5950_new	14	15	14	15	13	18	20	6	23	16
TTCTGAACACGTTAGC	ref_5950_new	12	12	19	17	14	13	16	15	11	9
CGTGGCGTAAGGAATT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CACCGTTTCGCTAATG	ref_4116_fdr	25	65	29	26	87	23	76	25	69	24
ATATAGTAAACCATGC	ref_4116_fdr	17	11	20	14	16	16	9	12	10	13
CCTGCAGTGTAACAAG	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGTTGCGCTGTAT	ref_4116_fdr	1	4	5	7	5	4	5	4	10	1
TGTGTTGTCCCAATTT	ref_4116_fdr	61	43	68	41	33	25	49	36	43	38
CATTCCGAGGTTCTTC	ref_4116_fdr	14	7	11	9	10	14	7	8	10	9
TCGGACGGCTGTGGAT	ref_4116_fdr	9	7	11	17	15	12	17	15	18	8
GGGGCCCACCTTGATT	ref_4116_fdr	14	24	19	13	17	13	22	13	19	11
CTCTCGACTTAGAAGA	ref_4116_fdr	14	17	20	15	26	9	20	21	16	11
CTCGAAGGGGCCTGTG	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CGTACATACATCAGTA	ref_4116_fdr	59	70	76	45	93	61	90	61	86	63
TTACACGTGGGATTCT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCTACCGTGGACT	ref_4116_fdr	3	17	13	13	12	8	19	6	12	1
CTACAGTGTAAGCTAG	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
AGGATTTAGCTTTATG	ref_4116_fdr	2	1	7	5	0	1	3	2	4	5
CGTTCGGGACGTTTAC	ref_4116_fdr	17	45	34	29	40	21	27	11	33	16
CGTCTTCGATTATGAC	ref_4116_fdr	10	3	5	7	9	7	3	5	8	4
CACCCACACGTGCCTC	ref_4116_fdr	2	51	4	2	74	4	70	8	76	3
GCGGGCATTTTTAGGC	ref_4116_fdr	15	19	15	11	15	18	16	18	11	8
TCTCTCGTAGGTTAGT	ref_4116_fdr	17	39	32	21	48	23	48	32	47	10
CACGTGGCTCTATCCG	ref_4116_fdr	26	40	37	21	26	27	27	28	32	30
GATCAAATTAGCGTCT	ref_4116_fdr	13	6	8	16	9	7	9	6	8	13
TTCCTCATTTTGCATC	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGTCATTGCTAAG	ref_4116_fdr	83	104	91	65	102	66	114	52	125	75
TTCCAGTACAGGTCTC	ref_4116_fdr	15	9	6	10	11	8	10	2	7	3
GTTATGCGTCCTTTGA	ref_4116_fdr	3	7	4	5	4	6	6	4	7	8
ATACTTGTCTCTGGGG	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCCATTCTCGTGA	ref_4116_fdr	5	0	2	1	11	1	5	3	4	5
CCAGTATTAGTATGTA	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
GTACACTACCAAGTGA	ref_4116_fdr	12	58	22	23	56	18	48	21	63	11
CTAATTGTGCTAAGCT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCCCATGTTGTCC	ref_4116_fdr	88	96	111	67	112	98	117	77	139	86
AGGTTTAGGGGGTGCC	ref_4116_fdr	6	4	7	6	4	4	5	3	7	6
GCGCGCGCAAACCATG	ref_4116_fdr	6	7	18	16	10	5	11	15	10	13
GCTGGCGCCTATCGTC	ref_4116_fdr	24	50	31	27	50	32	38	29	38	26
CACTCCTAATGCTTCC	ref_4116_fdr	0	43	3	6	59	3	52	5	69	2
TCGCTAATACTGCCAC	ref_4116_fdr	18	30	24	17	31	16	31	16	30	22
GAAAAACAAGCTCTCT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTACTTCTTTGGT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
TTATGTTTATCTCGTG	ref_4116_fdr	34	34	36	26	41	27	28	27	37	24
GGTTACACTTTCAAAC	ref_4116_fdr	40	46	33	34	37	30	38	38	32	27
CTTTTATTACGTACTT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGTCTATATTTAG	ref_4116_fdr	1	1	3	0	1	5	3	1	5	1
TGGCTTTTAAATTCCT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTTTAGCGTTGCA	ref_4116_fdr	11	19	9	6	14	9	14	5	12	6
CGTCGGGCCTTTATAC	ref_4116_fdr	2	3	8	10	3	4	10	4	11	3
TTAAAATTAGTATGCT	ref_4116_fdr	35	43	48	35	67	31	60	34	63	35
TATAAAGGTTGGGAGC	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CATACTCCCGATATCT	ref_4116_fdr	8	20	7	8	18	8	19	3	16	2
CAGTGTCGCAATTTGA	ref_4116_fdr	8	23	8	8	11	16	20	7	14	11
GAAACCTAACTATAGG	ref_4116_fdr	33	37	27	25	26	26	34	17	31	17
AAGCAATTTTAGGTGG	ref_4116_fdr	51	38	42	31	31	25	47	26	53	28
TCACTGCTACACCCGA	ref_4116_fdr	14	31	13	12	17	9	29	15	20	14
CAATAAATCACATAGC	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGGACTTAGCATA	ref_4116_fdr	18	12	17	12	25	14	15	15	16	15
GGGGTTAACCCCAGTC	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CTACAAGGGGATGGGT	ref_4116_fdr	13	14	18	7	18	13	12	9	16	3
CATGCTAGCTTGTTTA	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAATTAGCTTGCT	ref_4116_fdr	2	5	3	1	4	6	7	4	6	4
GGTGCTGCAGTTACTC	ref_4116_fdr	18	24	30	14	25	14	23	16	12	12
TGCGGCCCTTGGGGTC	ref_4116_fdr	13	25	17	9	26	19	19	14	36	16
TACATATTCTAATCGC	ref_4116_fdr	16	19	20	11	17	12	21	13	21	14
CATGGGTCTGATCTCG	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
CCTCAAGCGTGAACCC	ref_4116_fdr	1	3	2	3	4	0	2	0	1	0
TTGATTTTCGAAGGAT	ref_4116_fdr	9	19	21	16	17	22	18	9	25	17
TGCGTTCCGCTTCAGC	ref_4116_fdr	4	3	4	5	3	1	6	1	11	2
TGCGTCAATCCCTGCT	ref_4116_fdr	33	41	38	24	52	32	49	32	50	35
GGTTTGGCTAAGCAAA	ref_4116_fdr	32	41	34	22	34	19	34	21	38	30
TCTAACGTTATTACCG	ref_4116_fdr	0	11	2	3	6	1	2	2	3	2
GGCGCTAATATAATTT	ref_4116_fdr	60	65	65	58	85	63	94	60	117	45
AGTGACCGGATACGGT	ref_4116_fdr	122	146	133	127	168	130	171	126	154	124
ACTGGCGTTAGATTTT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAGAAGTAACTCA	ref_4116_fdr	49	74	53	37	60	44	73	37	92	36
TCGGTACTTCTTGCTG	ref_4116_fdr	6	31	4	9	17	8	25	7	21	4
CCCGACGTAAGATGAC	ref_4116_fdr	10	19	9	10	29	13	25	10	21	10
TGGAAACCTTTTGGCT	ref_4116_fdr	13	18	17	14	21	16	25	19	16	20
GCAATGGTCAAATGCA	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
ATACTATCAATTGGAT	ref_4116_fdr	46	43	51	21	51	31	69	25	45	24
TCATGTAGAACAGGCC	ref_4116_fdr	15	22	16	10	30	29	18	19	34	19
CTTTAGGTTGGCCCCC	ref_4116_fdr	6	10	7	3	5	7	4	5	11	4
CTTACACTTCCAATTG	ref_4116_fdr	13	19	7	11	18	8	17	15	19	5
CCTTTTGTTGTGCGTT	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTCACAAATTAG	ref_4116_fdr	0	0	0	0	0	0	0	0	0	0
TACGCTCGCTCGCGAG	ref_4116_fdr	17	11	13	10	7	9	15	7	5	4
GACGTTGGCCATACGC	ref_4116_fdr	57	56	47	41	57	46	45	54	47	49
CGTGCACAGATGTCAG	ref_4116_fdr	10	17	5	8	12	3	12	6	11	11
GTAGCCTGTCCAAGAT	ref_4116_fdr	142	146	165	120	170	141	194	116	159	121
GTCTCAAGAGTACTGC	ref_4116_fdr	39	57	53	41	64	29	54	47	58	37
ACGGCTTTGACCAATA	ref_4116_fdr	41	34	42	28	48	46	58	32	44	45
TTGATTCTTGTTAGAC	ref_4116_fdr	38	53	47	24	51	21	57	30	52	32
CCCCCGCGGAAATCTT	ref_4116_fdr	2	10	1	5	2	5	12	3	9	1
CCCCGCACTATAACGT	alt_929_fdr	13	8	17	20	16	12	15	12	20	12
GTCAAGGTCTCTAAGC	alt_929_fdr	417	199	588	549	170	419	199	408	189	401
ATTTCGCATTCGTCCC	alt_929_fdr	148	31	175	160	48	132	53	146	46	107
CTGGTCCCGTCATCAG	alt_929_fdr	171	55	237	209	73	173	64	168	60	152
GGTCGCATCGTTTCGG	alt_929_fdr	97	34	101	86	27	77	26	62	24	68
CGATTCTCTCCTTCTT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGCGCGGTCCGGC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TGAATGTCCAGAAAGC	alt_929_fdr	587	171	742	648	199	583	169	553	183	504
GATCTGCCGCGGCGAC	alt_929_fdr	115	35	155	139	32	124	36	115	39	118
CTGCCCAAGGTCCAGA	alt_929_fdr	84	20	67	77	19	86	24	75	27	75
ATTCGGGACCAGGAAT	alt_929_fdr	424	125	488	398	131	368	109	393	129	349
TCATTCTTTGTGGTAG	alt_929_fdr	104	44	158	98	42	96	46	117	37	90
GCACAGCGGGCTGAAC	alt_929_fdr	224	62	262	253	63	214	64	208	77	219
TTCCTGTCTGACCGGA	alt_929_fdr	117	49	122	150	52	115	43	126	56	123
GTCGAATGTTCTTCTC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCTGTGCCTTGGA	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GGAGGCTTTGTCTCCG	alt_929_fdr	119	38	142	142	54	123	41	95	38	113
CATTGGGCCGAATACG	alt_929_fdr	157	46	211	176	61	169	44	168	40	134
TCATGAAAGAGGGGTT	alt_929_fdr	204	46	257	232	68	199	47	191	59	174
GACTGATTAACTCGCA	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GCATATGGTATCGATT	alt_929_fdr	470	146	553	502	171	486	143	482	178	384
ATTACCATCTTAGTGA	alt_929_fdr	24	1	21	26	9	27	7	25	5	15
ACGTTATCTGGTGCTT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGTCATTTTCCAT	alt_929_fdr	4	1	2	1	0	1	3	2	0	1
TACCCAGTTTGCTTTT	alt_929_fdr	61	29	70	71	24	57	23	65	30	63
GCCTGTGTCCCGATCT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTTGATGTGGGCT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTACAGCGGAAGG	alt_929_fdr	37	19	53	49	14	44	16	46	11	30
ATGCTTCTCGCTCCCC	alt_929_fdr	56	40	70	72	39	63	42	76	50	55
GCAGTCTGTTGGGAAA	alt_929_fdr	98	32	117	95	38	76	40	95	44	114
GCAAGCCCAGCTCCCC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TGGAGGTCTAATAGAT	alt_929_fdr	442	135	604	509	148	391	158	451	154	390
AAGAAGGTCGATCCGC	alt_929_fdr	162	40	209	174	38	160	29	145	36	144
CAAGGACTCTGCAGTG	alt_929_fdr	162	43	192	130	55	151	53	133	48	124
GGGGGTCTAGAGATCC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
ACACCTAGCGTTTAAA	alt_929_fdr	282	87	338	319	109	258	86	279	107	206
CAGGACAATCCTAAAT	alt_929_fdr	132	56	209	193	49	178	59	181	51	197
CTGAATAATTTTTTAT	alt_929_fdr	123	34	157	149	40	121	44	125	25	109
CTATTACTTTGCTTGC	alt_929_fdr	4	1	15	4	4	9	4	10	5	3
GCGCCGGAGGCTGGCG	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GCACACTTTGTGTTAG	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGCGGTTACGTTC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCAAACAAATACC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTATGCCGCTATA	alt_929_fdr	416	175	556	465	158	450	162	418	180	385
ATCCTATGAGTACTCT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTATAGTCTGCGA	alt_929_fdr	44	10	45	34	17	32	17	41	5	45
CTCGTTTCTTGTCTTC	alt_929_fdr	152	46	190	176	29	152	49	166	62	130
CATTTGTGCATTAGAG	alt_929_fdr	147	40	186	159	60	156	59	141	60	130
CGCGAGTCTGAGGTCG	alt_929_fdr	135	44	181	159	39	139	58	154	60	140
CGCAGAACCCCCGTTA	alt_929_fdr	11	2	31	15	4	11	5	4	4	12
TTTTAGCGTTAGGGGG	alt_929_fdr	89	31	88	114	32	77	26	99	31	61
TGACTTGATAGCGTTT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
CACGATTCTCGCGATT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCTCCACCCCCGC	alt_929_fdr	7	19	10	8	27	5	30	4	14	4
TCCCATTTAAGGAATA	alt_929_fdr	89	22	116	102	34	85	30	78	31	86
GTGATTTAAGCGCTCC	alt_929_fdr	5	7	9	16	7	3	6	9	9	5
AGGTTACATGGACTGC	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTGTCCTTCCCGG	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GCCATTGCTCGTTGAT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTTCGTGATCCCA	alt_929_fdr	97	24	113	97	32	81	28	85	35	80
CCTGCCTTGTGTAGTT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGTAGGTCATGGC	alt_929_fdr	64	18	70	78	24	73	17	60	16	53
TATATTTTCAGGATAA	alt_929_fdr	220	68	295	263	68	200	64	251	72	207
CACTCTTCGTGATGCG	alt_929_fdr	110	25	147	132	33	120	33	118	44	91
ACTAAGAGAAACAATA	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCTATGATTACGG	alt_929_fdr	23	11	26	23	7	15	8	25	7	17
ACAAGTGTCTTCCGCC	alt_929_fdr	615	196	821	709	207	655	237	606	231	577
ATGCGCCGTCCCTAGG	alt_929_fdr	33	13	54	24	14	42	5	32	21	35
GTTCTACTTGTATCCT	alt_929_fdr	523	161	591	512	179	482	172	469	156	412
CTTGACTCCTATGCCG	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TTATCACGGTTCCGGC	alt_929_fdr	11	3	16	12	3	18	2	12	6	7
CAACCCATTTGCACAA	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTGACCAGACTT	alt_929_fdr	48	12	84	56	14	42	31	46	11	50
TATAGCGAGGTGGGTT	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGTTTCTATTGCC	alt_929_fdr	53	11	53	52	18	40	9	33	13	37
GATGAAGAGTTATTCA	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TCCCACCAGGCATCCG	alt_929_fdr	122	33	165	149	53	142	51	139	44	124
GAAGACCACTGGGGGA	alt_929_fdr	65	27	96	94	21	75	15	97	26	71
TGGCTGTTTATCTATA	alt_929_fdr	131	49	204	159	37	128	48	134	35	148
GGTACAGTTATCATGA	alt_929_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCAAATCGATAGT	alt_929_fdr	45	10	44	57	14	39	23	41	17	33
ACCATTATGTTTAGTC	alt_929_fdr	77	25	111	97	22	72	32	71	34	78
ACTGGCCGGTTAATAC	alt_4486_upstream	50	87	60	57	78	60	82	46	97	37
AGGCCCAGATGGCCAT	alt_4486_upstream	33	28	43	24	36	18	40	28	40	23
GGGAGTACCAGCAGGT	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTTCCCCCTGTGG	alt_4486_upstream	9	12	13	10	8	16	13	14	17	13
CTTTGTCCTCATTTTG	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTTGTTAGCCGCG	alt_4486_upstream	43	48	63	47	70	39	68	27	73	30
GTTCCTGCCCCGTCTG	alt_4486_upstream	0	16	6	8	23	3	25	8	22	7
TAACTGATATCTCCGG	alt_4486_upstream	12	14	9	14	14	14	16	10	22	10
GCCGCTGAGGGCTCTT	alt_4486_upstream	10	14	16	6	16	12	13	3	8	8
GATTGTCTGGGCCCGC	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
GGATAGAGAAATAGCT	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
GCACCGACGTGTGTCG	alt_4486_upstream	48	63	48	22	66	49	78	32	93	37
CAGCCCTCGTGTGGAT	alt_4486_upstream	100	231	149	145	281	129	245	157	281	106
ACCAAATCCACTTGCT	alt_4486_upstream	35	55	42	26	72	21	52	34	63	17
CTCTGCGCTAACAACG	alt_4486_upstream	22	46	35	28	43	26	36	22	23	17
GTGGTCACGTAAAATA	alt_4486_upstream	45	68	75	46	76	56	89	43	86	42
ACCAAAGTCTTCCATG	alt_4486_upstream	28	93	42	30	80	33	94	33	76	19
AGCTGCGGCGTTATAA	alt_4486_upstream	5	13	7	5	10	7	11	10	16	4
CCCACTTTACAACTTT	alt_4486_upstream	4	21	16	12	9	6	19	12	8	7
ACTGATTCCGTATGTG	alt_4486_upstream	8	13	10	20	20	16	17	13	18	12
GATGACATTGTGTCTT	alt_4486_upstream	30	26	24	15	32	24	32	21	34	18
GGGTCCGTTGACGAGC	alt_4486_upstream	90	105	101	91	120	67	112	63	127	80
GGGCCGTAGGCATGTT	alt_4486_upstream	11	19	11	8	11	10	16	10	8	5
CCTGCCATAAACGGGG	alt_4486_upstream	59	105	68	59	126	73	106	54	92	59
CGCCCAATAGGAGATG	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCCGTGGGTGGTT	alt_4486_upstream	19	30	30	20	35	29	32	24	36	15
CCTCCTGCAAGATTCG	alt_4486_upstream	8	20	5	8	11	8	11	5	25	5
ACCCACCCAGCTTGTC	alt_4486_upstream	4	6	9	7	12	7	7	10	10	7
ACTACGCTAAGGTTTG	alt_4486_upstream	3	4	4	4	5	3	6	3	8	7
TAATAAAGTGTTACTA	alt_4486_upstream	10	21	12	20	25	23	33	14	26	19
CTAGCAACTTCGTTGG	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
AGGCGGTGAATGCCGG	alt_4486_upstream	85	94	119	99	95	97	123	74	111	72
GAGCTATACACGAAGG	alt_4486_upstream	27	42	39	34	48	21	52	29	41	23
GCTTATCCGTGCATAT	alt_4486_upstream	9	13	14	10	18	7	11	11	9	6
TCGTTACGTTATTTGT	alt_4486_upstream	7	8	7	3	12	7	10	10	18	7
GGATAACAAATGCGCC	alt_4486_upstream	90	121	119	109	114	92	124	74	117	91
TTGTACTGAGGTAGAC	alt_4486_upstream	0	1	3	2	2	1	0	1	0	3
GGGAGTCAATTCTTGC	alt_4486_upstream	1	4	4	7	2	5	5	2	4	6
AAGATCTACGTTCTAC	alt_4486_upstream	2	10	13	11	12	6	21	6	12	5
CTTCAGAGCCCGGACG	alt_4486_upstream	12	20	13	21	14	20	18	19	18	11
GACCATGTCGGGTTGG	alt_4486_upstream	124	154	122	111	137	86	153	115	176	84
TCACATAATGCTTCTG	alt_4486_upstream	4	3	3	5	4	2	4	6	6	2
CTCGTCTGCTTCGCTT	alt_4486_upstream	5	18	12	4	10	3	10	6	15	5
TCTTCTTAGTTTCCGA	alt_4486_upstream	12	19	14	9	19	6	16	8	20	16
TTTCGATCAGCCGTAT	alt_4486_upstream	14	21	11	14	21	13	19	15	33	21
CTTTGGCTCCCCGCTA	alt_4486_upstream	9	31	13	9	46	8	41	7	39	12
ATTCATCTGGTATGGT	alt_4486_upstream	12	10	5	9	15	8	18	7	24	5
TGCGTGTACTTTAACT	alt_4486_upstream	26	25	26	20	25	35	38	30	32	18
TTTGGTCACCAATTTT	alt_4486_upstream	28	50	50	55	58	43	61	29	54	30
CGATCTCAGCCTTAGT	alt_4486_upstream	79	138	76	63	112	56	117	75	135	68
GTCAGCCGTTTTCAGT	alt_4486_upstream	4	22	2	10	13	2	17	1	20	3
GCACCCAAGACTGTGC	alt_4486_upstream	20	25	15	20	50	20	32	14	42	17
TAGTATGAGCGGTGCG	alt_4486_upstream	45	86	61	68	74	54	76	48	78	69
CTCCGATGCTCTCTCT	alt_4486_upstream	7	16	10	8	17	7	18	9	10	8
TAAATCTATGCATAGG	alt_4486_upstream	19	26	16	28	28	23	34	27	32	14
CGTTGGCGTTCTATAC	alt_4486_upstream	9	29	23	17	20	11	18	19	46	15
ACTAATTGTTGTTGTC	alt_4486_upstream	28	60	43	37	62	36	40	36	49	36
CACCCAACCGGGGACT	alt_4486_upstream	14	22	15	25	16	13	23	12	13	10
CGTCCCCGTAATCCAC	alt_4486_upstream	33	48	29	22	69	17	83	17	70	16
ATTCCGTGAGAAGTCT	alt_4486_upstream	10	6	8	5	12	7	10	9	8	5
TTAGCTTTCTATACCC	alt_4486_upstream	7	11	4	2	2	5	6	1	8	3
GCCGCCCCAAATTCGG	alt_4486_upstream	6	16	9	6	11	4	16	12	14	15
GCGACGTGGTTTTATA	alt_4486_upstream	8	8	12	16	16	9	22	10	16	4
AGCCATTGCATGTATT	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
TCATCCCACTGCTACT	alt_4486_upstream	6	5	5	9	7	2	7	7	5	5
ACTCCGACCATCTGTA	alt_4486_upstream	22	37	26	20	36	18	45	14	44	16
GCATGTTCCTTGTCGC	alt_4486_upstream	8	13	14	5	16	10	13	9	14	4
CAGGGGGAGTCCCGTA	alt_4486_upstream	95	99	92	87	104	78	135	73	109	69
GCTGTTGGCTTCGGCG	alt_4486_upstream	5	6	8	7	15	5	14	10	14	11
ACCTAGATAGTTATTT	alt_4486_upstream	0	4	1	3	4	0	2	2	0	0
GTTCATATAAAAGCGG	alt_4486_upstream	30	30	33	20	38	32	31	23	42	18
AACAGAGATCAAGACG	alt_4486_upstream	126	212	172	154	228	141	201	138	200	148
ACGTAATGGAACATGG	alt_4486_upstream	22	50	43	34	40	21	36	36	45	31
TCTAGTAAGGTTGTAA	alt_4486_upstream	69	126	86	88	126	81	115	62	116	55
CTACCATTACTGCCGT	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
TGGACTCCTCTTACTC	alt_4486_upstream	31	41	43	48	38	35	46	33	44	39
TAGGCGCGCTCCTACG	alt_4486_upstream	28	45	36	30	36	33	45	32	38	30
CAGCGAAGCTTTTCTC	alt_4486_upstream	6	8	10	10	12	7	9	5	9	7
GTGATAGAGGCATTGG	alt_4486_upstream	20	21	30	32	22	20	40	11	30	12
ATTAATGTTGTGAGCC	alt_4486_upstream	162	223	212	153	237	163	235	135	220	139
CTTAGTTCGGGGCTTG	alt_4486_upstream	21	45	25	26	41	30	39	23	36	12
GCCGTTACAGCGACAG	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
GCTAATCGGGGTCGCC	alt_4486_upstream	62	101	109	103	90	67	82	89	94	62
TGTTGAAATCGTGCAG	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGTACCCATTTGA	alt_4486_upstream	121	217	158	139	211	146	232	137	213	108
CCCCCTGGTCCGGTGG	alt_4486_upstream	10	9	8	10	6	3	14	3	10	3
TGATAAAGTGTTACTA	alt_4486_upstream	85	128	118	84	130	74	135	59	150	74
ATATAGGTAGGGTTGT	alt_4486_upstream	59	106	61	45	83	52	96	54	97	50
ACACTGCAGCACGTCT	alt_4486_upstream	8	15	11	10	19	14	22	12	27	7
ATGAAGTGCATCGGGG	alt_4486_upstream	6	10	2	2	6	2	9	6	6	8
GATCTCAGTTTTCGGG	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTGTGATTATCGC	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGTTCAAATCGTA	alt_4486_upstream	23	50	29	25	49	28	47	31	49	23
TCTTCGCTCACTCCTG	alt_4486_upstream	16	28	27	29	27	15	37	12	23	21
TCGTAGTCCGCGTCAT	alt_4486_upstream	2	5	8	4	7	6	10	8	6	3
TGTGTCGTCAATTCGG	alt_4486_upstream	2	6	3	1	8	5	9	1	6	6
GCGGCCCTATGGCGGA	alt_4486_upstream	7	2	10	8	8	2	7	9	13	4
TCGACGCCCCTGATCA	alt_4486_upstream	50	49	49	37	63	27	58	45	62	25
CACCCCGTCTCGACTC	alt_4486_upstream	8	28	18	12	33	7	32	12	44	5
TAATTCATGCCGGCAA	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTTATTCATTCAC	alt_4486_upstream	27	37	31	30	44	23	48	23	47	22
GCCATTATAGGGGTCA	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGTCCGCTCCAAA	alt_4486_upstream	26	30	30	19	44	20	39	23	27	31
AGATGTCTCAAACTGT	alt_4486_upstream	38	41	33	23	46	27	49	18	45	17
TCCGCGCACGAAACAC	alt_4486_upstream	2	2	4	3	0	4	3	2	3	0
GTACAGACTATGCGGT	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
GACATTCCCTTGGAGC	alt_4486_upstream	27	21	22	9	27	16	31	9	36	19
GAATGCCTCCCCGCCG	alt_4486_upstream	0	0	0	0	0	0	0	0	0	0
CGATCCAACTGCCTTC	alt_5703_new	3	16	3	1	5	5	4	2	9	4
GCTTGTCCTCTGTGCG	alt_5703_new	0	0	0	0	0	0	0	0	0	0
CGCTCTTATGTCTTGC	alt_5703_new	0	0	0	0	0	0	0	0	0	0
TTAGTATGTGAGTTGT	alt_5703_new	84	145	113	66	142	78	152	71	159	64
TTCTGCTCATGTTATA	alt_5703_new	23	44	28	24	42	32	41	31	38	15
GCGTTCCCGCGCCTGT	alt_5703_new	7	33	20	12	18	9	19	14	30	11
CAGGTATATTTGCTTG	alt_5703_new	17	26	16	15	43	18	45	17	48	14
TCCCTCTCCAGCCACC	alt_5703_new	19	15	21	20	27	28	30	19	27	13
CATTATATTACCGCCT	alt_5703_new	0	0	0	0	0	0	0	0	0	0
GGCCGGTTTGTTTTGT	alt_5703_new	7	13	17	10	9	2	17	9	23	9
CTTGATTCATCGGTAA	alt_5703_new	23	53	36	22	36	21	48	30	41	28
ATATGTGACAGTATTC	alt_5703_new	7	8	10	4	4	9	11	3	8	3
CGCCGGTTTTTACGAT	alt_5703_new	11	22	18	14	24	8	18	10	20	5
GAATTCGTGAATTATG	alt_5703_new	29	23	23	15	41	16	47	18	38	13
AAGTCTTTATTCGTGT	alt_5703_new	0	0	0	0	0	0	0	0	0	0
TAATAGCGAATACCTG	alt_5703_new	52	72	61	49	74	50	80	43	107	31
CTTCCGTCATACGGCC	alt_5703_new	86	160	122	121	161	76	146	73	145	89
AGTTCCAGACTTGAGT	alt_5703_new	18	27	17	6	23	11	27	9	27	20
TTCCGGGATAACGCTT	alt_5703_new	0	0	0	0	0	0	0	0	0	0
GGCCGCACTGGTTCAC	alt_5703_new	0	0	0	0	0	0	0	0	0	0
TAGGTGAATTCAGAGG	alt_5703_new	10	13	20	5	9	14	26	6	17	6
GCCATCGTCAAGAATT	alt_5703_new	16	30	21	18	39	34	33	18	37	34
GATGCGTCCTACTATG	alt_5703_new	33	71	57	43	68	34	67	25	83	26
ATGTTACTTATAGTGT	alt_5703_new	45	78	66	56	100	56	111	49	105	47
CTAGCAAGCATAAGCT	alt_5703_new	0	0	0	0	0	0	0	0	0	0
TTATGTGTTATGCTCA	alt_5703_new	0	0	0	0	0	0	0	0	0	0
CCCTTGTTTGACTCCT	alt_5703_new	31	40	28	20	49	15	47	19	51	28
ATTTTGCGCTCGATTA	alt_5703_new	15	20	17	16	21	19	36	11	36	21
GACTGTGCCAAGCGGC	alt_5703_new	0	0	0	0	0	0	0	0	0	0
ATGTGTCAACAACGCT	alt_5703_new	8	2	9	5	10	2	8	5	4	3
CGCAGTAATCTTAGAG	alt_5703_new	17	28	15	3	16	11	26	9	20	15
CGCATTGGTGATTGGC	alt_5703_new	12	47	31	13	41	8	26	13	36	12
AGGTTCAATGCCAATT	alt_5703_new	7	6	7	10	17	5	7	8	10	8
ATTTGCAATCTATGCC	alt_5703_new	19	24	19	19	27	20	32	25	25	14
TGTTAGTCAGTAGAGT	alt_5703_new	0	0	0	0	0	0	0	0	0	0
AGAAATGTCCCTATTT	alt_5703_new	14	13	15	13	16	9	10	8	7	13
TAGTTGATCTTATGTT	alt_5703_new	11	35	14	15	23	20	26	16	28	13
ATCCATGGCCGTAAGC	alt_5703_new	0	0	0	0	0	0	0	0	0	0
GGTCCCCAGGAGTTAC	alt_5703_new	25	46	28	19	33	21	23	33	42	17
ACCTAGTATATTTCTT	alt_5703_new	28	32	37	31	56	15	59	22	53	22
TGTTAAGATAAATTGG	alt_5703_new	6	21	11	8	9	7	17	1	15	12
AGAGCTTTTATATGTG	alt_5703_new	10	19	12	11	23	17	23	11	31	10
TGTCAACAGCACATTT	alt_5703_new	3	4	5	3	13	3	6	2	7	5
CTTCAACGTCTCATAA	alt_5703_new	0	0	0	0	0	0	0	0	0	0
GAGAAAAAGGAGCGAG	alt_5703_new	396	585	455	366	614	359	636	356	671	320
CCCGTTAGTTCATATG	alt_5703_new	0	0	0	0	0	0	0	0	0	0
ACATCACGGGTATAAG	alt_5703_new	0	0	0	0	0	1	0	1	2	0
AAGTTCCTCTTCCAAT	alt_5703_new	40	71	71	53	77	47	75	35	88	48
CAGGTTATCTTCACTT	ref_5703_new	37	56	60	53	75	40	62	47	74	43
CCACGGCCATTTGGCC	alt_5703_new	26	52	18	17	55	17	52	8	59	14
AGTAAGTAACCGTTTT	alt_5703_new	17	30	28	24	26	23	22	26	21	26
CATGGGTCACCAATGT	alt_5703_new	41	73	38	45	72	35	59	39	58	34
TCTCCCATTTGTTTTT	alt_5703_new	45	63	35	43	65	29	63	36	61	36
TGCAACTACCGGATTT	alt_5703_new	1	1	0	2	3	0	2	1	0	1
CCCAAGCGGTCATCAG	alt_5703_new	14	27	13	22	25	25	24	16	35	15
GAGTCTAGCCCCTGGT	alt_5703_new	1	0	1	0	0	0	0	0	0	1
TTCTCGCTATATAGCA	alt_5703_new	4	3	9	4	7	4	3	2	4	3
TAAGCTGTCCGTATTG	alt_5703_new	0	7	8	7	9	3	10	7	12	6
TGCCTGGCTGTACTGA	alt_5703_new	54	97	71	60	121	63	109	61	112	56
CTCATCCCGGGAGCTT	alt_5703_new	4	5	2	5	8	9	7	3	7	4
CTTTGGCTCCTTGATT	alt_5703_new	12	17	8	6	19	9	20	9	22	8
TCCCTGTGAAGAATGC	ref_5703_new	1	6	5	0	12	0	9	0	9	1
CACCAAGTGACGCACG	alt_5703_new	19	30	11	14	27	21	20	16	26	18
TGCCTCTTAATCATAG	alt_5703_new	5	23	11	14	25	10	19	9	21	14
ATATCAAAGTTATTCT	alt_5703_new	11	8	6	12	20	13	21	20	14	14
TTGCACCAGGATGTTC	alt_5703_new	1	10	5	4	8	4	5	6	8	0
TAGTCTCGTCCGTTTT	alt_5703_new	0	0	0	0	0	0	0	0	0	0
GCTCACGACGGTAGTC	alt_5703_new	0	1	0	2	2	0	5	2	4	1
TTTAAAGAGGGATAAA	alt_5703_new	3	12	5	6	11	8	13	2	13	2
AGTGGGTATAGGTCGG	alt_5703_new	12	15	18	12	10	7	16	11	11	7
CTGTGAACGGGCTTAT	alt_5703_new	8	13	5	13	8	7	18	5	9	6
TGTAAGTGACGTTTTG	alt_5703_new	4	12	8	2	7	9	17	6	14	7
GTACACACTATTTCAG	alt_5703_new	3	31	3	4	21	2	19	5	23	3
GTTTAGCCGCCCGTCC	alt_5703_new	4	11	4	1	11	4	7	2	17	0
ATACCGATGTCAGTTC	alt_5703_new	5	12	2	3	7	7	7	2	7	6
GCAGCCCGGAAAGCGT	alt_5703_new	9	10	13	19	18	4	15	9	24	12
TCTTGGTCCCGATTAC	alt_5703_new	7	5	2	3	3	2	8	3	3	2
TTATGCCTAACATTAC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GTTTTTAATAGGTGGC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CACCTACGACCGGCCA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTACAGGCCCATTACC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGTTGGCTACCACACA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GGCTACGGTCTAAGCA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
AGCTCGCCTAGAACAG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
ATAATGTGACAACTCG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
ACCTTCCCCTGTTGTC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CTCATTGGAAGATGCT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GACGAGTTAGTTTTAA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GGTCGTGGACCTTATA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GTCTCCTGCGCGGTCC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GCCTGCCGAATAATTC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CCAGCGTAGTCTCTGC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TAGTCCCTGTTGTTCG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CGAATCGCTCGCAGAT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
AGTAGCCTAGAGCCGA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGCCACGTCCACTGCG	ref_2973_missing	11	2	8	5	10	7	14	10	10	5
GACGACAAGCGTACGC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGTCCAAAACTCTATT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTTTAAATCTTTTCAG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GCGATGCTTAATGACC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTATACAGACTTTTTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CAAGTACACAGTAACG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
AATACGGGCCGAAATT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TCAAGCATGACTGCAG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GTGTATCGATAGATCC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TAGACGTGGTTCTGTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TCATCTATAAAAGCTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CACGGCCCTCCAACAC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTAACGAAATCGGCCC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TCTGTATATATGCTGT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
ATTCGTTTGCCTTTCG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CAGCCTTTACCATGCA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGATTAGCTGATGTTA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TAGACGTAGCGCGACC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GAGTGTATCATCCTAT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GTATTTCTCCCATATT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGGTTATGCTAGCGTT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
AAGTTTGGTCCGGATT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTTGTGACGGGTGGTT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGACGTATTTTTCGAT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GCTCATGCGCGTTTTT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTCACTCAATTCTGCC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGTATCAAGGAGTCAC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GTTCACTTGTTATCAA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
AGTCAACCTAGACGTT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CTTGGATGTAAGTATT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GGTTCGTCATTCGTTA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GGTATATGTAATGCTC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GGATGATTCCGGACAC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTGTTGCAACCTTCCG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TCACTCTCAAGTGTAG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GGACTCCCAGGTACTT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GTTGGACGGCAAGGTC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CGCTCACTCTCTCGGT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
ATGATCGTACTTTGCC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GGCTCGAAGCCAATTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CCGTAGCAACTTAACG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
GCATTCAGGTCGTAGC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTATTGGGCGAGTTTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGCATACTTTCAACGG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TCTTAACTACCTGCAA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TCTTGTCTAATGCGTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGGACTGCTGATATCT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CATCTCGGTCCAAAAT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
ACTGCCCTAGGCTGTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CCCAATCGTTGCTAGT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
ACTTCTTAGTCTCTTT	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TGGCGGTCGTCCATTG	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CCGCGATTACATAGTC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
ATGAACGTAGGGTGAA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
CAGTTCCTAGAGCTAC	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TTAGCTGTGGTGCCTA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
TAGTCGCTCCCTTCTA	ref_2973_missing	0	0	0	0	0	0	0	0	0	0
AGCATGAAAATTGGCA	ref_5392_reverse	51	47	53	46	36	35	37	51	54	52
CGCATCCACTGGTATA	ref_5392_reverse	139	91	191	151	116	135	108	129	115	130
TGAGGCCCCTTACTTA	ref_5392_reverse	51	49	73	53	31	61	35	49	46	55
ACGTGCAGGTTTTGCG	ref_5392_reverse	45	33	83	61	43	63	42	50	45	62
AGATTCCGGTGTCTGA	ref_5392_reverse	0	0	1	2	0	0	0	2	2	0
CGGAGTGGATACCCCC	ref_5392_reverse	42	23	36	43	27	41	21	23	27	28
GTCCTAGGTCCGATTA	ref_5392_reverse	5	4	9	3	6	6	9	5	8	10
CTCAGTCAAGGCACGG	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
CCTGATTGGTTCTAGC	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
GTACCTTCATTGTACA	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCCGTTCATTGCT	ref_5392_reverse	100	62	124	105	52	108	75	89	87	91
GCGCAGTTATCTAGGT	ref_5392_reverse	25	23	24	21	20	27	12	27	24	27
CGTCACATTCAAGTAG	ref_5392_reverse	142	127	206	173	105	165	105	158	115	170
GGCAATATAACACGTA	ref_5392_reverse	178	126	233	183	137	161	151	178	147	173
GTGCCCCCAGGACTTG	ref_5392_reverse	8	12	14	10	8	9	9	17	10	13
AGACCCAGCAAATTGT	ref_5392_reverse	28	27	25	27	14	20	22	17	24	33
CAATCATCTCACAATT	ref_5392_reverse	33	24	40	32	31	40	24	30	31	34
ATCTGATCCTTTTATA	ref_5392_reverse	11	3	14	10	3	11	11	17	9	13
CATGCCGCCAAGAAGC	ref_5392_reverse	54	39	63	47	47	52	60	57	49	45
TCGCAATTGCCACATC	ref_5392_reverse	101	90	119	85	90	102	61	82	101	62
TGCTAACCAAATCCAA	ref_5392_reverse	69	49	69	58	64	57	61	63	64	41
TTTTGCTCCGCCTCTT	ref_5392_reverse	18	7	16	5	4	12	4	6	8	5
CTGCATTGCAATTACC	ref_5392_reverse	10	5	5	10	4	6	8	12	8	8
TAGTCAAGTATTGGGG	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
TAACCACGTTATGTTT	ref_5392_reverse	127	94	135	133	97	125	122	106	125	105
CATGTGTGTATTCAAA	ref_5392_reverse	91	49	97	95	61	86	65	77	55	81
CGTCAACCCTCACGGC	ref_5392_reverse	418	358	588	514	424	423	358	468	374	393
TGATTATTACTCAAGT	ref_5392_reverse	18	14	16	18	15	15	6	18	20	18
CGGTTTGCGCTGCTTC	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGGCGCGGCGACT	ref_5392_reverse	6	9	11	5	2	2	11	3	5	9
CAATTGGCATGCCGGA	ref_5392_reverse	35	29	50	28	32	27	20	30	31	27
TATTCCTTGTCCCGGA	ref_5392_reverse	204	149	228	214	164	210	132	182	173	179
GATGTCTAAAATTATT	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
CAACTTATTCGGTCTG	ref_5392_reverse	28	13	18	15	14	13	13	14	34	14
TATTGGTGGTTGTTCA	ref_5392_reverse	28	23	34	32	24	23	14	30	33	19
ATGAGTGTTCTTTCGG	ref_5392_reverse	3	0	1	1	1	4	3	0	0	1
GATCGGTAGGCCACGT	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
CCCTACATTCGCCAAT	ref_5392_reverse	12	23	15	18	20	20	14	15	21	21
GAGGCTCGCTATATGA	ref_5392_reverse	2	3	0	2	0	0	0	1	0	1
AACTACACATTCCAGC	ref_5392_reverse	100	58	104	98	56	74	67	84	69	61
AGTCATGGGTAGTTTT	ref_5392_reverse	29	34	36	29	18	37	29	31	24	36
TTCGCCAGATGTGATT	ref_5392_reverse	77	35	63	83	40	45	42	63	46	46
GTGCTGGCTGGAGACC	ref_5392_reverse	102	91	133	122	76	91	88	76	75	85
GAGCCTTTCTGCCGTT	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
ACAGGTTAGCCCTAAC	ref_5392_reverse	308	191	337	298	213	305	225	290	202	258
AGTGCTATACGACGGC	ref_5392_reverse	18	15	24	13	16	23	15	18	14	21
GACTTCGGACCCTATG	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTTCTCGTACTGG	ref_5392_reverse	194	103	213	183	118	180	132	165	135	109
TTGGTCCACTTCGTAT	ref_5392_reverse	8	9	10	13	14	12	5	11	11	10
ACTAGAGCTTATGCTT	ref_5392_reverse	105	99	125	94	92	104	91	92	120	74
GCAATCCTTTTTCAGT	ref_5392_reverse	26	26	45	31	19	36	33	26	26	34
GTGATCCAGATTGCGT	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTCTCTGCTGTG	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
AAGGACTCGCAATTTC	ref_5392_reverse	40	23	44	43	26	32	25	36	23	42
ATATTATCATAGAATT	ref_5392_reverse	207	126	235	197	163	184	143	211	151	205
GTCTTCATGTGGCATT	ref_5392_reverse	44	17	47	49	33	38	49	43	27	49
CGTCACCCCTCACGGC	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGCTACTACGGCT	ref_5392_reverse	27	19	26	19	25	26	17	14	12	28
ATAACGATCACAAAAT	ref_5392_reverse	48	39	66	72	41	65	32	55	27	34
AGCAAAGAGAAGAGCA	ref_5392_reverse	204	101	210	190	92	160	126	180	126	157
GTTCGCCCCTATCTTT	ref_5392_reverse	51	31	53	41	34	45	35	39	42	29
ATTTTTCCTTAAATTT	ref_5392_reverse	8	15	16	14	7	9	7	10	9	11
TAGAGCTTCTCTAAAG	ref_5392_reverse	99	84	139	116	72	89	66	125	82	88
TAGTGAGCAATTTTTA	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTGGTTGTGTAC	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTGGTGGTTTCTA	ref_5392_reverse	128	79	158	120	90	81	75	97	84	101
ATTGCAATGTAGCGTA	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
TCAAACGCTACATCAG	ref_5392_reverse	87	82	140	83	71	92	88	84	80	66
CCCTCCATTAAGCGCT	ref_5392_reverse	47	34	60	61	46	56	40	51	42	38
TCCCCGTACTTTAGCT	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
AACAAATGAATCAAGT	ref_5392_reverse	9	9	18	20	7	11	9	9	8	8
GCGAAACAAAGTTTCG	ref_5392_reverse	8	12	7	8	14	2	12	4	17	8
CGTAGTAGGCCATTTG	ref_5392_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTGGGCCGTTTGT	ref_5392_reverse	9	5	14	9	4	9	14	6	9	13
TTACCTGTATTGGTTT	ref_5392_reverse	41	29	40	38	27	34	28	26	30	20
GATACTTATGTTTCAC	ref_5392_reverse	41	34	44	38	41	27	32	33	34	33
AATGATCATTGATTTA	ref_5392_reverse	12	9	16	17	5	11	13	18	11	20
AATTGGCGGGCGGTGT	ref_5392_reverse	75	62	78	75	61	69	58	56	51	56
CAGTATTTAGCCAAAC	ref_5392_reverse	68	46	82	75	73	69	64	78	76	71
CGTATCCCGTGTTACT	ref_5392_reverse	104	96	149	131	74	131	87	129	110	104
GTCGCAATGATTTGCT	ref_5392_reverse	47	32	79	47	35	36	26	47	42	34
CGCTTGAGTATATGTC	alt_5844_new	53	77	66	49	75	55	72	48	79	52
TTGGGCACGCGATTTT	alt_5844_new	7	15	10	10	17	10	20	6	12	6
TTGCCCTTTGGACTCG	alt_5844_new	352	479	386	317	393	287	590	259	539	282
TGCTGTTGTCGGACTT	alt_5844_new	46	89	67	42	83	48	87	54	86	43
ACTTTAATTGAAAGGC	alt_5844_new	17	30	14	16	28	15	28	12	35	22
CCAGTAACCTTCGTTT	alt_5844_new	4	17	13	13	11	10	12	10	21	4
GAACATGCCCGAACAT	alt_5844_new	2	1	10	2	3	2	2	3	7	0
GAAGCGCATTGTCTTC	alt_5844_new	22	22	27	16	35	29	24	15	21	16
GAAGCATTCATTTACG	alt_5844_new	77	112	92	71	126	69	125	62	132	69
CTTGGAATCACTCCTA	alt_5844_new	18	15	10	5	16	17	22	12	20	4
AATCATCCCAAACTTG	alt_5844_new	9	15	11	6	22	21	6	3	13	13
GGGAGTAATCCATATT	alt_5844_new	14	31	25	28	35	28	34	13	40	20
CAGTTCGCCCAAAAGT	alt_5844_new	0	0	0	0	0	0	0	0	0	0
ACATCTCCCGACGTTT	alt_5844_new	4	67	9	5	77	3	78	8	72	11
TTATAACTGCGTCAGT	alt_5844_new	30	59	55	24	43	34	39	27	61	28
TAACACTACAACATGC	alt_5844_new	19	20	15	12	21	18	27	11	28	11
TGACCGCCAGTCTGCG	alt_5844_new	11	23	11	15	18	15	20	11	14	20
TTCTAGGTGACCCGGC	alt_5844_new	3	10	6	7	5	1	12	4	9	6
ACCTAACCGGTACCCG	alt_5844_new	0	0	0	0	0	0	0	0	0	0
ATACCGACCGTTCATG	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TTGGGGGGCTTAAGGT	alt_5844_new	88	121	106	74	141	67	150	80	154	93
TGTCGGAGTCCCCGAT	alt_5844_new	9	3	1	2	6	3	3	3	8	3
TAACTGGTCTCCCGAA	alt_5844_new	37	33	30	28	33	26	38	29	57	24
ACGAAGCTGGGCCCTT	alt_5844_new	7	9	14	2	13	7	13	4	17	3
CTTAGGTACGCGCAAT	alt_5844_new	10	17	4	5	12	5	6	13	8	6
CGCGCTGAAGTGTGTC	alt_5844_new	0	0	0	0	0	0	0	0	0	0
GGATCTTGGAAGCGTG	alt_5844_new	0	0	0	0	0	0	0	0	0	0
CTGTATGGCTATCGTG	alt_5844_new	13	10	10	9	14	9	10	6	15	7
TTACAGTATCCGACTT	alt_5844_new	10	11	13	5	20	19	16	12	29	7
CTGCCAGGAATCACAG	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TGGATACTACATCTCC	alt_5844_new	24	39	34	12	55	18	50	25	38	21
TGATTCAGCTCTAATT	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TGATTCTTACCTGAAA	alt_5844_new	0	4	0	0	2	0	3	1	5	1
GGTTGTTGTTATGCGG	alt_5844_new	14	38	17	21	39	11	39	13	32	21
AGGGTCTTCCGGGCTA	alt_5844_new	36	78	42	35	77	26	76	19	98	36
TATGTGAGGGTGTGCA	alt_5844_new	26	39	24	25	33	25	32	24	39	25
GCCCGAACCTCTTTTT	alt_5844_new	60	106	75	54	110	68	103	63	117	57
TTGCGGGTTCCGACTT	alt_5844_new	0	0	0	0	0	0	0	0	0	0
GGAGAAGGCCGTCCCC	alt_5844_new	15	40	14	11	19	6	10	20	23	7
TGTCAATTAAGCGTCA	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TGGTCTTTCAAGTGTG	alt_5844_new	22	31	14	9	23	15	23	12	33	12
TCATTTGATATATATT	alt_5844_new	29	43	25	32	50	31	71	34	52	31
CTAGCTTTTCAGACTA	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TCCGATTGGTCCGTTA	alt_5844_new	0	0	0	0	0	0	0	0	0	0
AGGTTTTTGCTAGCGA	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCAGATTAAAA	alt_5844_new	47	97	50	40	87	74	101	57	87	47
GCTTGGCTGTTAATGT	alt_5844_new	2	13	4	6	6	5	8	8	8	3
TTGAATGGCGGCGCCC	alt_5844_new	23	17	24	14	25	16	14	11	12	13
TGCCGCCGTAGGTAGT	alt_5844_new	35	62	39	31	52	33	45	30	47	37
TACTCAACTCAAACTT	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TCCCCAGGGATAAATA	alt_5844_new	103	94	74	73	109	87	127	61	109	81
ACTTATGGGGGGAATA	alt_5844_new	13	11	13	10	12	7	14	8	26	12
AAACTACTGGTTGTCC	alt_5844_new	0	0	0	0	0	0	0	0	0	0
CGTCTTCGCCTTGGTG	alt_5844_new	26	40	40	27	36	25	45	20	50	20
TTTGATTTTGAGGTAC	alt_5844_new	25	45	31	24	52	33	38	13	32	11
AGTACCTACGAACAGA	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TAGTCAGCTCCCCCAC	alt_5844_new	7	11	2	6	15	6	9	5	12	3
CTCTACGGCTAATCTC	alt_5844_new	11	22	12	7	15	8	10	8	21	14
AGTTTGTTGTGCCATG	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TTAAAGTTCCTCTATT	alt_5844_new	52	61	62	29	88	59	84	40	93	36
CATGGAATCTAGGAAG	alt_5844_new	0	0	0	0	0	0	0	0	0	0
CACTCGCGGTTCTCGT	alt_5844_new	0	0	0	0	0	0	0	0	0	0
GTCGGACGTAAGCGTT	alt_5844_new	7	13	6	3	14	4	9	7	12	4
AATGCCTTACATCTAG	alt_5844_new	30	38	19	30	55	34	50	27	49	30
TGTCATCTCCTTCCCC	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TAGTTGCCGCCCCCCT	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TATCGGGCTTCGGAAA	alt_5844_new	13	8	4	12	16	8	15	10	13	5
TGAGCCTACTATGAAT	alt_5844_new	38	66	60	43	58	35	84	43	62	42
GTTGGGCTTGGGTAGT	alt_5844_new	38	56	56	46	64	45	87	35	106	44
CAGCCGATCGGGCTCA	alt_5844_new	0	0	0	0	0	0	0	0	0	0
GATTACCGCACTTTCA	alt_5844_new	34	33	32	16	46	21	28	25	31	11
TTGATGTCATGGCCGG	alt_5844_new	0	0	0	0	0	0	0	0	0	0
CGCTGATGAGTTTTAT	alt_5844_new	18	28	24	27	31	17	31	14	32	16
AGGTCTTCAGACCGAT	alt_5844_new	5	7	3	9	8	3	17	11	19	7
GACGCCGTAGGCGCGC	alt_5844_new	0	0	0	0	0	0	0	0	0	0
TCGTAACTGCTCACAC	alt_5844_new	60	77	56	59	97	48	95	54	108	45
CAACCCAATATGGCTT	alt_5492_upstream	13	15	14	15	15	17	14	17	19	10
GCGCTGTGCATTACTA	alt_5492_upstream	130	150	157	138	156	124	141	119	135	122
GTAAGTTGCGTAAATC	alt_5492_upstream	6	7	6	9	8	11	10	10	14	9
TATCTATACCGACATC	alt_5492_upstream	7	7	11	1	7	7	6	5	11	9
AGGGGACTGTGACGTG	alt_5492_upstream	17	11	15	11	12	13	9	4	15	13
TTTGCAGGCGCATTCT	alt_5492_upstream	8	6	13	15	8	12	10	12	16	13
GCATTCTTATACAGAC	alt_5492_upstream	20	7	14	3	11	13	11	9	11	5
TCTATATAGGCGATAA	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCCGCGGATTTAA	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
ACCTACCCGAAGGCAT	alt_5492_upstream	0	0	1	0	0	0	0	0	0	1
TTTGGCGTGCCCTTCC	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAGGCCATGCTAA	alt_5492_upstream	4	34	15	14	40	6	36	9	41	9
ACTCCACTTCGATTTG	alt_5492_upstream	3	25	0	4	42	2	35	4	42	1
GTTTCCGTTAGTGTCC	alt_5492_upstream	48	47	61	44	32	61	58	54	62	50
CCGGTACCGACAATTT	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCGCGTAAGAAAT	alt_5492_upstream	39	45	44	45	52	34	42	51	37	32
TACTTTAGTATAGCAT	alt_5492_upstream	37	41	34	28	33	16	34	37	48	25
TCCGTCCCCTCCTTAT	alt_5492_upstream	18	24	16	18	19	20	23	17	17	9
TTCAGTCTCTTGGGTG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TCATCCTCTTTAGTTT	alt_5492_upstream	3	3	3	9	10	8	4	7	4	4
GTTCTTTCGGTCTCTC	alt_5492_upstream	26	18	39	40	33	33	24	32	40	29
ACGATTTTCAGCCGAA	alt_5492_upstream	3	0	5	2	4	6	10	1	7	3
TGATTCTTCATCCCTA	alt_5492_upstream	50	43	61	52	38	70	48	61	55	48
ATTTGGGCCTCTTCTA	alt_5492_upstream	31	13	24	21	19	21	19	23	27	18
CCAGGAAACCTTTTAG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTTTCCGTGCAAT	alt_5492_upstream	32	31	36	30	47	21	49	24	33	26
CTCAGCAAGCGGTAGA	alt_5492_upstream	259	289	367	307	348	288	363	269	345	242
GCTAGCCCATCTCACT	alt_5492_upstream	79	118	145	110	124	85	110	104	118	94
TCACAGAGCGCGTAAG	alt_5492_upstream	27	34	34	26	21	33	32	22	35	17
TTTTGTGTGCCGACGA	alt_5492_upstream	2	13	9	11	6	10	21	5	21	1
CACGCCTTCTATCTGG	alt_5492_upstream	29	28	32	19	27	23	47	27	33	29
ACATAGTCGTGACTTG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
CCAGCGTGGTGCCATA	alt_5492_upstream	4	5	5	4	8	4	5	1	10	4
GCGCACTCCGTCCGGA	alt_5492_upstream	60	59	46	50	76	39	73	36	75	40
AAGGCGGGTATAATCA	alt_5492_upstream	32	27	22	37	32	30	26	18	28	21
CTAGTTCCGTCCCATA	alt_5492_upstream	13	17	24	29	28	14	25	14	18	12
ACTCGCGTGCCGTGAT	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCGTCTCAATCGC	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCTGCTATGCGGT	alt_5492_upstream	9	8	5	5	7	2	8	10	7	8
GGGAAATTCTCTCTCC	alt_5492_upstream	304	273	350	270	275	271	276	261	278	248
GTGGCAAGCCGTCAGA	alt_5492_upstream	7	10	11	7	3	9	8	9	12	8
TTGTGCAGATGCCGCA	alt_5492_upstream	51	52	70	62	55	51	61	47	75	47
GAGCGAACCTGCGTTG	alt_5492_upstream	120	140	126	102	116	118	114	96	149	103
GATGTACCATGAGACA	alt_5492_upstream	53	44	54	48	51	35	42	40	45	27
GCATGTGATCTACAGT	alt_5492_upstream	17	26	29	29	21	14	24	19	31	21
TGCCTTTTCAGTGAAT	alt_5492_upstream	3	0	9	1	9	1	4	1	4	4
CTGTAGGATACGCTTC	alt_5492_upstream	11	11	18	6	15	24	13	15	11	7
CGCTACGGAGTTAAAT	alt_5492_upstream	10	5	14	11	11	8	11	10	6	5
ATGGGCACGTGTAATT	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
CTATAATTGCAAGAAA	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTGTTTTGTTCCC	alt_5492_upstream	32	24	34	35	20	23	16	21	10	23
TGCACCTTCTCCGGAC	alt_5492_upstream	36	30	41	44	44	30	41	31	45	26
ACCTGTGATAAATTGC	alt_5492_upstream	22	31	43	25	45	29	33	28	32	25
ATTTACTTTACGTTTT	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTCTGTGCGAGTT	alt_5492_upstream	1	3	1	5	7	0	2	3	6	5
GCTTGAAGCTTATTAC	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
GATACCGGCGTTTAGT	alt_5492_upstream	4	9	5	8	5	14	3	4	12	9
GTCTGGTTATGCGCCC	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
AATGTTTCCATGTACC	alt_5492_upstream	0	5	0	3	0	2	2	2	1	2
AGATACTGGTCACATA	alt_5492_upstream	94	90	124	110	105	106	110	98	115	87
CGATCAAGCCTGCTTT	alt_5492_upstream	106	71	139	92	98	89	88	84	100	103
TTGCTTAAATTGATTC	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTAAGGCGGTTC	alt_5492_upstream	18	17	31	15	19	24	15	18	11	17
TTTGCAGGCACATTCT	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
AAGATAGTTGTCGTTC	alt_5492_upstream	93	69	92	78	74	65	80	94	80	66
AGACCGTTTGGGGAGG	alt_5492_upstream	7	10	19	13	8	10	7	11	8	13
ATGAACGTCTCCGGTA	alt_5492_upstream	42	18	61	50	23	43	33	38	45	26
ATCTTACAGCTCTTTT	alt_5492_upstream	28	22	27	29	33	17	37	22	27	21
TCGTACGAAAGAATCG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
CACCGGCCCAAGTATG	alt_5492_upstream	23	38	23	32	54	17	62	28	40	23
ACTATCAGTTTGCAAA	alt_5492_upstream	42	69	61	61	63	50	57	37	74	64
ACTAGTGCCCTATTTT	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TGTATCACAGGGCGGA	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGACCTTCACAGG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
GTCATTCTCTAAGACC	alt_5492_upstream	44	61	44	56	44	40	48	34	41	37
TTCATCGAGTTGCATG	alt_5492_upstream	6	3	11	4	3	6	4	1	5	4
TTCAACGTTTCTTTCT	alt_5492_upstream	47	36	48	39	50	33	35	41	32	41
TGTGGTCTTTGGATTC	alt_5492_upstream	25	13	14	20	13	17	12	13	24	13
ATGGGCCTTACACTAA	alt_5492_upstream	8	5	4	9	3	3	4	6	2	8
TCAGTATTGGCTATCT	alt_5492_upstream	13	17	24	29	11	17	21	16	16	18
CACCTTCCCTCTGAAA	alt_5492_upstream	12	20	23	15	13	15	9	13	22	12
CTTGCCGAGTCCTTTC	alt_5492_upstream	5	15	4	14	18	8	14	14	17	13
CCGTTATTAGCCGCCC	alt_5492_upstream	31	33	24	26	38	23	36	18	26	20
ACGTCAAACTGTCACC	alt_5492_upstream	56	57	74	60	76	57	61	56	76	50
TACCTCAACGCTCGCA	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TCAATCAAGTATGTAT	alt_5492_upstream	3	6	5	6	8	7	4	8	6	3
AACTGGCAACGCCACT	alt_5492_upstream	40	55	45	45	52	44	59	54	63	35
AAGGGATATTACCTTA	alt_5492_upstream	24	34	26	28	28	15	41	23	42	31
TATAGGTATCCATCGT	alt_5492_upstream	106	69	100	95	111	81	82	61	93	91
TAGAATCCCGTCTGGA	alt_5492_upstream	55	67	48	65	58	45	61	46	62	51
GCTGAATTTGGCGTCC	alt_5492_upstream	37	31	36	34	25	25	32	22	23	26
CTCGAGTCTAACAATA	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAAAGCGGAATGG	alt_5492_upstream	18	11	14	14	17	12	8	6	6	7
TGACTACGCCTATCGG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTGCTATGCGGGC	alt_5492_upstream	27	27	30	26	16	11	22	30	22	15
CACAATCGGCTGGTCT	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
GGACGTCGCTCTGGCA	alt_5492_upstream	49	46	73	49	42	34	45	33	45	46
GAAATAAATACTTTCT	alt_5492_upstream	7	9	10	11	10	24	9	9	13	16
GCGTGATCTAATAAAA	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTTCATTCCCCTT	alt_5492_upstream	51	82	65	40	70	39	72	46	97	43
ATTTAATTCACACACA	alt_5492_upstream	99	99	139	96	98	89	126	106	114	96
GTATGGGAGTGACGGG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCTGGCCCGTACG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
AGTAATTCGTGATTCG	alt_5492_upstream	37	26	44	29	20	24	22	36	22	17
CCGTCCTTTTCTTTGG	alt_5492_upstream	19	23	43	17	39	27	33	18	15	18
GTTTTGAGGATTTGAC	alt_5492_upstream	98	82	93	76	73	91	79	88	89	75
TCATTGTTATAGTGGG	alt_5492_upstream	0	0	0	0	0	0	0	0	0	0
TAAACTTATGCTGCGA	alt_5492_upstream	15	12	18	11	18	14	18	11	13	12
TAGGGTATCCTCCCAT	alt_5492_upstream	7	2	16	8	2	9	5	5	5	11
GTATGTCATTAACAGT	alt_5492_upstream	26	33	41	31	25	22	31	33	33	28
ACACGTGGTAGTCCAT	alt_5686_new	17	35	17	23	34	11	21	21	36	14
CCCAGGATACTCTTGT	alt_5686_new	0	0	0	0	0	0	0	0	0	0
AAACAGTGCCAACGCG	alt_5686_new	18	14	27	14	20	20	20	22	29	18
CTAGGTGGTGTAATTG	alt_5686_new	20	25	22	26	46	20	37	14	52	17
GGAGAACACTCGTGCG	alt_5686_new	28	59	43	19	54	34	71	27	54	22
CTGTCTTCTTCAAGCT	alt_5686_new	21	28	29	24	33	14	26	21	37	20
TAATCCTGCGTAAACC	alt_5686_new	24	33	20	19	26	15	29	18	30	26
ACTCAGGGCTCGTTTA	alt_5686_new	7	18	6	6	15	4	6	5	16	12
TTCGGATAAGAATACT	alt_5686_new	40	72	52	43	62	39	56	44	65	39
ATTCCTGCAGACGCAT	alt_5686_new	0	0	0	0	0	0	0	0	0	0
CGCGCGTGTGCTTTTC	alt_5686_new	0	0	0	0	0	0	0	0	0	0
CTCACTCGAATCGACT	alt_5686_new	30	47	31	26	47	32	50	26	39	14
GTCATCAGCCCGGTTC	ref_5686_new	4	9	15	8	14	6	10	12	8	4
TTCCATCAATTACTTC	alt_5686_new	25	48	28	32	50	28	52	31	35	44
GCTGAACAATCAGGCA	alt_5686_new	4	3	7	6	5	4	1	7	9	2
GGGGAGCCAGTCTTTC	alt_5686_new	5	10	6	8	13	2	10	7	12	5
CTACGTATAAGGGCAG	alt_5686_new	42	68	44	47	58	42	73	30	60	46
GACTGCCTTGTGTTCG	alt_5686_new	7	6	4	6	6	13	14	7	8	4
TTGGATCTACTTGCTG	alt_5686_new	407	529	504	410	619	405	581	413	633	389
ACTTGGACTCCTTGTG	alt_5686_new	8	20	16	12	24	6	34	9	25	7
CATACACATATGGATT	alt_5686_new	25	28	26	21	17	17	20	19	25	25
CGTAGGGTCGATACTG	alt_5686_new	42	38	53	35	42	43	49	31	52	27
TGACAGACCGGTTGCG	alt_5686_new	43	89	63	50	94	50	103	58	95	63
TTAAAGAATTCTCTAT	alt_5686_new	25	38	27	21	44	28	47	21	41	21
CTACGGGCGAAAAGTT	alt_5686_new	5	11	7	7	10	6	21	8	9	6
TGCATCCGTTTATCGT	alt_5686_new	0	0	0	0	0	0	0	0	0	0
CGAAGACATTCCCACG	alt_5686_new	48	65	62	51	70	54	80	42	77	30
AGGCAAGTTATTTTTC	alt_5686_new	26	42	37	44	39	32	45	34	40	21
ACATTCGTTGTATGCA	alt_5686_new	71	98	79	93	109	96	133	73	129	84
CATGAATTATGCCTGG	ref_5686_new	0	0	0	0	0	0	0	0	0	0
GCTTCGTCTAGCAGAA	alt_5686_new	21	40	32	18	45	30	39	29	38	19
CCGTTTGCGTTAGTTC	alt_5686_new	0	0	0	0	0	0	0	0	0	0
TTTTCGGGGGCTGGTT	alt_5686_new	2	7	4	6	8	5	4	1	6	10
GCAGTGTAATGACCTT	alt_5686_new	15	20	16	17	24	16	37	23	38	16
TAGGATCTACTTGCTG	alt_5686_new	0	0	0	0	0	0	0	0	0	0
AGCGGTGTGAACGGTT	alt_5686_new	6	14	9	5	12	4	15	6	8	11
TCACTCCTCCATACTG	alt_5686_new	2	27	2	0	16	2	20	6	12	5
TTCGTTACTGATGCGG	alt_5686_new	86	125	129	72	149	88	161	101	143	71
TTTGCGTCAATCGTTT	alt_5686_new	0	1	1	0	0	0	0	0	0	0
GAACCTTTGATCCTTG	alt_5686_new	0	3	1	3	2	4	3	3	5	3
GGTACATAATAAGTAC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CGTGTTAGCATTCGCG	ref_3117_RC	341	60	431	399	50	309	57	308	60	298
GCCACCCGACTACGCA	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
GTTACAGCGTAATTAA	ref_3117_RC	91	19	110	88	13	96	13	77	15	72
GGCTTTTGGTTTATGT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TCACGCCGACTGCCTT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTAGAAATGGAC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TCGCATGCTACAAGGG	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CTGTAGATTGACTTTC	ref_3117_RC	172	54	194	174	36	174	36	169	48	156
CATTGGTCTCGGATTT	ref_3117_RC	34	8	45	42	3	30	7	44	11	32
TCTTTCTTTCGGATTA	ref_3117_RC	386	51	469	394	63	362	72	386	65	330
TGTTAACGTCTACGGC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
AATACGCGCATAAGAG	ref_3117_RC	57	3	52	30	8	43	7	36	11	20
GAGCATTGAGGGCACT	ref_3117_RC	232	55	316	291	41	271	55	244	38	202
GGCCAGGGTTCAACGG	ref_3117_RC	266	35	284	285	35	203	50	228	44	233
CTTCAGGCTCAAGTCG	ref_3117_RC	330	49	387	310	57	292	63	340	50	271
TGGTGTGTGCCAGGCC	ref_3117_RC	69	12	65	51	13	64	15	57	5	57
GTCTTCAGTCTGTGAT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
GTTAGGAGCTCCGGGC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGTAAACGCGAA	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CTTGCGTCGACTCGCT	ref_3117_RC	160	18	180	162	24	150	23	126	27	129
TTCGGTGGCTTTATGG	ref_3117_RC	303	35	396	290	53	275	45	300	48	248
TATGTCCCCGTGGTTG	ref_3117_RC	285	52	367	282	60	297	42	265	66	260
CCATCAAGCGGGTACC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
GCGAGTAGCGCAAAGT	ref_3117_RC	1254	203	1639	1429	210	1180	202	1159	219	1117
CCTCTAGCGTACCAGA	ref_3117_RC	108	21	154	141	21	97	17	127	25	131
CTTACGGACCCTTAGA	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TCGCCTTTTGATTGTC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CCATGAAATATTCATG	ref_3117_RC	83	11	110	95	16	91	23	74	15	83
AACTTTTTAAGTATTT	ref_3117_RC	1078	155	1349	1181	148	1024	151	1071	165	941
TCATTTTTCCTCCATC	ref_3117_RC	357	43	384	386	62	298	52	322	41	256
CGATCAGCACTGCTAT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TCGGTTATTATGGTAG	ref_3117_RC	204	39	252	234	41	192	34	229	44	139
ACGTGGTTTCTTTTAC	ref_3117_RC	31	6	42	52	3	21	6	29	3	24
GGTATGGGTCGTTTAT	ref_3117_RC	291	43	388	346	51	278	54	312	73	282
TTATTGAGTGTGATTC	ref_3117_RC	591	123	728	630	134	569	117	589	121	496
TTCGTGTCTAGAGTTT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
ATTTATTTTTCGGCTT	ref_3117_RC	38	16	59	56	6	47	15	76	7	58
TATTACTCAGGGACCC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TAAAAAGGCCCCATTC	ref_3117_RC	35	1	49	42	10	27	6	31	7	30
AAGTAGCATCTAACGA	ref_3117_RC	314	33	364	348	56	355	37	314	48	241
CCAAGTGGAAGCCGGG	ref_3117_RC	24	5	46	34	4	40	7	36	5	36
TCGTTTCTTATAGTAA	ref_3117_RC	196	26	189	178	19	153	30	175	36	159
TATTTGTAGGACTACC	ref_3117_RC	110	18	137	129	19	102	14	111	12	72
GGGAGCCGTTAAAGCC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCGGTAGAGTTG	ref_3117_RC	105	14	175	94	15	95	17	116	27	85
GTGAAGGGTTTGGGTT	ref_3117_RC	738	158	954	801	129	791	151	732	146	679
GCTCTCTGATTATAGC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TTCGTATTGGATTCCC	ref_3117_RC	798	121	1050	820	138	773	143	812	113	658
TTGATTGGATTTACCC	ref_3117_RC	54	13	73	58	10	56	5	45	10	41
TAATGCAGAATTGGTA	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
AAATCATTAAATAATG	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CACACTCGCCCGCCTG	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TTCTTTATACGAGCGT	ref_3117_RC	98	12	96	76	13	75	17	103	15	71
TCGGTGGGACCATTGA	ref_3117_RC	27	7	27	25	4	30	3	29	5	20
GTCGGCCGCAGTTGTA	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
AGTCCGAGGTTAGTCT	ref_3117_RC	130	26	159	150	17	117	35	125	20	115
TTGGGTTGTGCTCCAT	ref_3117_RC	747	131	944	819	104	673	154	706	124	640
CGATGGGTTCCCGCCA	ref_3117_RC	154	22	174	139	15	173	26	125	21	124
AATTGCTTATTATATG	ref_3117_RC	143	28	171	177	24	151	14	136	31	155
CTCATCATAGTCGATC	ref_3117_RC	131	32	197	154	33	120	36	148	35	132
CTTCTTATATCCTGTA	ref_3117_RC	675	81	791	639	85	650	108	603	115	535
GCGAAAGTCTGGCTAG	ref_3117_RC	202	31	269	221	35	215	35	234	39	197
CAATTAGAGGCAAAGG	ref_3117_RC	176	17	178	137	23	145	34	155	29	152
CGTGCTTGACCATGGC	ref_3117_RC	1654	308	2123	1904	298	1536	312	1670	320	1495
TGGAAAACGTATCATC	ref_3117_RC	134	19	168	134	27	125	21	166	29	116
CTGACAAGATATATGC	ref_3117_RC	409	62	412	411	82	413	68	377	63	360
TAGTGTAATTCGTGCT	ref_3117_RC	82	14	106	65	14	83	15	53	19	78
ATCGTAATCAAGTGCC	ref_3117_RC	135	27	153	144	15	143	24	139	28	126
CGGCCTTGTCTTGGTA	ref_3117_RC	230	22	251	244	37	204	37	201	48	195
GAAGTTTTTTAAACGT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TGCGTCTTTTGGTAGC	ref_3117_RC	186	35	207	209	30	162	48	149	44	150
CTATCCTCGGTAGATG	ref_3117_RC	87	15	85	69	16	54	21	62	27	78
GTCTGTTGCCTCTTAT	ref_3117_RC	133	21	147	134	17	113	25	125	21	93
CCGTTCCCTCTGCGTT	ref_3117_RC	280	50	335	301	57	280	54	267	67	274
CTGCGCCTCCTCCTCA	ref_3117_RC	235	32	296	285	37	238	53	251	59	231
TTCGCTACGTAAGTGA	ref_3117_RC	1220	202	1426	1273	183	1165	198	1113	212	993
ATTCCAGGAAGAGGGC	ref_3117_RC	87	15	123	99	14	96	19	79	15	80
TCCCGGCTGTCCGCGT	ref_3117_RC	769	111	859	729	107	657	112	696	112	633
CTGTAAGTATTTGATT	ref_3117_RC	14	2	27	29	3	14	8	17	3	16
AAACGGAGACGGCGCT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
ATATATCCGAGATTTA	ref_3117_RC	277	43	398	325	57	299	63	301	44	248
GCTCGTCCTGCCAGTT	ref_3117_RC	233	30	318	236	43	234	56	217	44	188
GGTCCGTATTGTATCC	ref_3117_RC	58	9	72	78	10	55	10	63	7	69
TCGTGTTGCAAGCATT	ref_3117_RC	77	7	89	59	11	70	19	54	18	60
CGCTATATCGATGGCT	ref_3117_RC	370	47	413	424	71	348	55	337	47	339
GGGGGGGAGGGGTACG	ref_3117_RC	5	2	7	3	1	5	1	8	1	3
TCTACATTTCTGCCCT	ref_3117_RC	65	9	70	65	18	52	15	88	10	60
GAGGCATGATGACCTT	ref_3117_RC	704	143	850	805	133	731	121	679	128	646
CCGCTCGCTCAATATC	ref_3117_RC	36	2	64	45	4	24	8	44	3	38
CGTGGGTATTTGGCTT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
ACCTGGGTTGACCACA	ref_3117_RC	418	74	501	427	51	397	85	408	57	338
GGAAAGCAGTTTCCAA	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TAAAACTACATCTTGG	ref_3117_RC	2701	424	3458	2976	462	2689	451	2648	415	2455
ATCCGATATTGGGGGA	ref_3117_RC	279	31	337	277	44	274	39	246	54	223
CTTAATCTTCTCACTA	ref_3117_RC	745	124	920	851	102	716	117	783	130	671
GTCCATTACGATTGTG	ref_3117_RC	466	56	512	485	75	464	71	418	67	371
CGCTGCGCTACGTACC	ref_3117_RC	67	34	113	87	37	67	30	61	35	78
TTGGGTGTGTATCCTG	ref_3117_RC	194	55	289	226	29	215	37	196	35	194
GATGCATCGCGGTCTT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CTATAATCAGATTAAG	ref_3117_RC	250	42	306	240	32	259	42	245	35	207
ACTCACAAGCTCCTCA	ref_3117_RC	74	10	101	114	7	100	15	82	11	87
TATACTTCAATGTGGT	ref_3117_RC	160	26	177	166	30	155	23	131	33	148
TTGGGTAGAGAGCTAT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TCGACCTTACGCTGCT	ref_3117_RC	116	16	111	116	16	99	17	100	25	89
TAACACGGTGGCATCT	ref_3117_RC	138	28	194	174	21	157	21	150	25	140
TATCAAGATCTTTTTT	ref_3117_RC	376	57	398	370	62	372	48	348	68	340
TCCATCATTGGGTAGA	ref_3117_RC	112	30	153	119	36	118	31	125	38	85
GATTTTGTCGGGTAAG	ref_3117_RC	38	8	50	42	6	35	4	33	5	34
GTTCTGTTACCTCACA	ref_3117_RC	499	84	649	533	66	453	63	479	91	413
GTGCGTATATTTCCGG	ref_3117_RC	72	10	86	78	11	56	19	65	10	52
TCTGCCGTTCGGGTCA	ref_3117_RC	1044	188	1287	1090	148	894	194	854	187	771
TGGTCCTGCGGTTAAC	ref_3117_RC	62	12	82	77	17	59	16	62	13	53
TTTCTTCGATCCCATT	ref_3117_RC	21	4	19	22	3	10	3	18	4	11
TCAACATGTTACGCTT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTGTCTCAAGTC	ref_3117_RC	121	17	156	130	12	102	18	123	22	92
GACGGATCGTGATAGG	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
CCAGCCGTCATTTATT	ref_3117_RC	13	7	13	14	9	14	12	17	7	11
CCTTTTTGATGGTCGG	ref_3117_RC	744	141	870	860	123	764	127	744	118	681
CTGTGATGGTTTGCCG	ref_3117_RC	25	3	20	19	5	19	2	25	7	10
CCAGTCTGATATCCTT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
ATGCTTCTGCTCTACA	ref_3117_RC	808	128	1130	950	143	880	161	822	152	732
GAGCATTGAGGGCTAC	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
GCACCAAAGCTCTTAT	ref_3117_RC	331	55	423	362	64	309	62	365	72	321
AAAATCCGGTTGAGCT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
AGCCCTCGGATGTTTA	ref_3117_RC	140	29	172	133	35	131	22	136	39	119
ACCGATCATGCTGTGG	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
GCCTGGCTAAACTCAC	ref_3117_RC	503	80	704	628	107	523	83	578	57	464
CGGGAAAGCTTGTGAT	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
AGGAACTCCCCTTATG	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
GTGCTGACCGATCTGA	ref_3117_RC	215	31	299	247	54	176	44	233	43	200
TTATGGCCCTCGCATA	ref_3117_RC	0	0	0	0	0	0	0	0	0	0
TAAGCCACGTACGCCT	ref_3117_RC	327	52	355	338	61	292	88	286	55	260
CTGCCCTTAAACTCTT	alt_6070_new	17	13	25	22	16	16	16	11	14	16
AATAATGGGATGCTTG	alt_6070_new	18	18	30	37	15	13	20	24	21	23
TGGTTCGCTAAGTCGA	alt_6070_new	0	0	0	0	0	0	0	0	0	0
CGGTTTCGGGCGGTCC	alt_6070_new	83	38	97	81	46	71	52	65	57	58
ACGCCAAATATATGTT	alt_6070_new	0	0	0	0	0	0	0	0	0	0
CTGTGTTTATAACCTA	alt_6070_new	30	12	44	30	10	31	15	24	20	30
TGACTGTTTGGATATC	alt_6070_new	0	0	0	0	0	0	0	0	0	0
TCCTGCGGCCTATGAC	alt_6070_new	35	22	50	36	24	40	17	45	24	38
TTATCTGCATGGGGGG	alt_6070_new	0	0	0	0	0	0	0	0	0	0
TCAGGGTCATTGTCTA	alt_6070_new	89	62	97	57	41	57	65	68	67	53
TCTTGGTTAACAATCG	alt_6070_new	19	15	47	19	16	21	10	22	14	16
ATCACACGTTGCAGTT	alt_6070_new	0	0	0	0	0	0	0	0	0	0
AATACCCCAGTGCGTT	alt_6070_new	63	53	77	91	49	69	54	70	51	64
TGGGGATCTCATCTAG	alt_6070_new	55	44	53	59	29	54	32	44	31	58
GACTTGGCATTCTCCA	alt_6070_new	84	45	97	83	43	87	46	43	55	65
ATGGGCGCTACCTATG	alt_6070_new	11	14	26	28	14	16	21	18	17	13
ACGCACAATAGGTTCT	alt_6070_new	12	9	11	10	7	11	11	7	6	13
CGTGTACTCACGCTCA	alt_6070_new	34	16	29	34	16	23	13	28	34	28
CGGTGCCCTAAGTTAG	alt_6070_new	240	140	301	223	145	251	153	220	153	188
ACAATTTGTAGCATTT	alt_6070_new	0	0	0	0	0	0	0	0	0	0
TGGCTGTGGAGTTGGT	alt_6070_new	15	14	12	16	12	14	13	7	13	12
TTTAGACGCTTGTCTG	alt_6070_new	0	0	0	0	0	0	0	0	0	0
TGATTGCAACATCCTC	alt_6070_new	0	0	0	0	0	0	0	0	0	0
ATTCTACATTTATTCA	alt_6070_new	39	44	72	53	37	55	42	56	51	55
AAATGTGGTTGGTGTA	alt_6070_new	97	78	144	108	77	98	85	102	92	113
ATGACGTTGGGTTCCG	alt_6070_new	42	25	41	34	17	36	26	46	26	33
TTGGGGTGTTCCTTTG	alt_6070_new	0	0	0	0	0	0	0	0	0	0
GATCGCACAGTCGTTG	ref_6070_new	10	2	18	10	11	14	8	9	10	13
GGTCGAGGTTGTTGCA	alt_6070_new	427	351	477	424	398	401	378	421	429	339
GGCCCGGAAACAGAGC	alt_6070_new	128	97	160	147	86	158	95	135	80	121
TACAATGGCTTAGTTA	alt_6070_new	14	6	11	13	4	10	13	13	10	8
CTCGGATACAGGGGGT	alt_6070_new	36	32	64	37	24	43	39	42	48	48
AGCTAGTACCCACATT	alt_6070_new	0	0	0	0	0	0	0	0	0	0
AGTATGTCTGTGTGAG	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
ATCGTACGTTTGCAAT	ref_3795_missing	24	70	36	26	56	26	80	28	102	27
CCCTGTCCAAGCCCTG	ref_3795_missing	15	19	6	6	9	12	25	15	25	5
GGGAAATGCGGGAACT	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTGGACGGATTG	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
CCGGTTATTGACAAGT	ref_3795_missing	23	40	20	24	40	19	37	17	52	15
AGCGTATCAATTATTG	ref_3795_missing	12	47	17	17	35	16	29	12	51	13
AACCTCCCCTTCACCG	ref_3795_missing	3	23	0	4	24	5	13	2	22	2
ACTCATACGCAAATCC	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
GTACTTTGGTGTAGGG	ref_3795_missing	70	139	90	56	181	55	165	68	140	62
TAAAATCCCAGGTCTG	ref_3795_missing	14	42	14	16	38	15	32	11	40	7
ATTTGCGTTCGGCACA	ref_3795_missing	9	18	11	11	25	5	30	7	30	7
TAATCTAATGCTACCC	ref_3795_missing	1	3	3	1	3	0	5	3	6	0
CTTGAATGTAGACATC	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
AAATTCCGGCATGGTG	ref_3795_missing	9	10	5	9	12	8	17	7	5	10
GTTTCTGGTGACGGGC	ref_3795_missing	1	4	2	7	4	0	2	4	4	1
AACATGCGGTGTTGTT	ref_3795_missing	33	89	45	39	56	43	79	29	74	27
ACCGTTCCTTGGCGCA	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
CCGTGTAATAGTGGCG	ref_3795_missing	4	13	9	2	16	3	18	7	20	1
TGCCAGGTGAAGTAAG	ref_3795_missing	11	28	13	6	24	13	42	9	21	6
TTGATGATTTCTGAGC	ref_3795_missing	26	18	26	19	30	6	48	13	26	15
TTGTAGGCTAAAAGTA	ref_3795_missing	18	35	15	17	40	18	35	11	37	18
TTGTGATGGTTGGTGC	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
TTCCTTCAAAGGGCTG	ref_3795_missing	28	65	27	28	66	34	74	32	63	35
GACCGCCGGGATCAAG	ref_3795_missing	4	18	8	9	20	8	21	7	13	8
CCCGACACTGTAGCAA	ref_3795_missing	6	29	7	8	32	9	24	11	33	8
GAGTAATCACTGTTTG	ref_3795_missing	6	29	6	6	22	10	18	7	34	15
TACACCAGCATAAATT	ref_3795_missing	24	77	41	34	85	31	77	36	81	24
GCATGTTTTCCTTAAT	ref_3795_missing	3	2	2	2	6	1	7	2	6	0
CATGGCCTTTTACCAC	ref_3795_missing	1	1	6	1	5	1	7	0	6	0
GCAATCTAGTGGCGAT	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
GTCATGGCTATTTTAC	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
CTGAGTCCTAAATTTG	ref_3795_missing	10	8	2	5	20	8	22	1	6	1
ACAGACTGATGTGATG	ref_3795_missing	12	38	16	17	33	15	27	10	28	17
GTCAACCCTTGTAGTT	ref_3795_missing	15	54	29	18	64	23	56	14	55	23
TTCGAGTCTGTACATA	ref_3795_missing	13	19	9	13	25	6	16	8	29	8
GCTAATCGAAGCCGGC	ref_3795_missing	4	12	9	4	11	8	14	9	14	2
ACGGTGTTGTTTATTT	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
GGGTGCCCCTTTAAAT	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
CTTAGGACCTGATCGT	ref_3795_missing	7	7	8	3	7	5	9	9	11	2
TCATGCACATCCTGCG	ref_3795_missing	30	61	30	18	50	20	47	14	64	23
GTCTCATAGAGGGTAA	ref_3795_missing	13	33	10	15	33	12	17	13	25	5
TCTTCCATTAGGTCAC	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
CACTTATTTCAACCCC	ref_3795_missing	11	28	17	19	40	10	31	8	38	15
GCAAAAGCCGTGGTTT	ref_3795_missing	4	12	5	3	10	5	17	2	16	3
GAACTTCATGGCTCGG	ref_3795_missing	13	10	7	3	9	4	14	7	10	8
ATGTTGTTGTCTTAGC	ref_3795_missing	5	14	8	6	13	16	11	8	16	11
TTTAAGCTGTCTCTCT	ref_3795_missing	15	43	21	29	31	35	49	25	42	25
CAGCCACTCGGGTCGT	ref_3795_missing	24	172	37	40	131	35	148	42	146	30
TGCTCGTGTGCAACAA	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
CGAGTTTAGCCGATTC	ref_3795_missing	13	16	14	9	26	11	25	5	23	11
CGAATGTGTAGTTGAC	ref_3795_missing	5	11	5	8	18	8	11	7	19	6
TCTTTTTCGTTCCCTT	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
TTGCTTTACTCACACT	ref_3795_missing	12	21	14	11	22	12	25	13	37	10
CCAAGCTATCAGCGAG	ref_3795_missing	10	19	7	10	38	11	26	8	26	11
CCCCAAAAATTCCTCA	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
ACTTGTCAGTCAGCTG	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
ATCTGGTCTAAAGTTT	ref_3795_missing	12	35	20	15	48	19	52	22	41	10
TATCTCCATCATACGG	ref_3795_missing	6	6	6	4	9	3	14	2	6	3
ACTACTCGCCATGCTG	ref_3795_missing	20	8	28	22	7	12	7	26	15	15
ATTGATTGCTGCTCTA	ref_3795_missing	0	0	0	0	0	0	0	0	0	0
TAGGTACCTCTTGTCA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
CGCTGAATGTTCAAAT	ref_3795_missing	25	43	22	21	51	14	41	17	34	10
TAAGTCTGGTGGCTGA	ref_964_RC	47	21	49	37	32	38	23	21	22	49
ACAGTTGCTTAGGGAC	ref_964_RC	28	23	29	34	29	21	22	31	38	29
GAGACTTTTCACTTGG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GATACCGTTCAGTTGA	ref_964_RC	44	56	65	51	52	77	64	56	55	66
TCGTCCAGGGGAGTTA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GCATAATGTACATAAA	ref_964_RC	11	21	32	13	18	17	16	16	12	16
GTATTGAGTCCCTTGC	ref_964_RC	52	38	73	40	41	44	46	59	33	59
ATTATCGTCCCGCGGG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
CATCCGGCCGATGGTG	ref_964_RC	6	9	6	8	9	11	13	7	10	8
CAACTGAGTTTGAAAG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
CGCTCTGGTCCAACGC	ref_964_RC	56	48	57	41	36	50	34	42	39	39
CCAGCAGGTCAGGTTG	ref_964_RC	6	28	7	6	20	8	25	1	30	5
AATCCGTTTTCCGGGT	ref_964_RC	0	0	0	0	0	0	0	0	0	0
ATGTTTGCGGCTGGGA	ref_964_RC	55	33	66	34	54	55	31	22	35	45
GTATCTCAGTCCGTCA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GGCTTTTTATTCCCGC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GCATAACGTGGGTAGC	ref_964_RC	1	3	1	2	1	1	1	0	1	1
TCCATCTTCACAGCCC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TTATCCCGTCAATTAC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GATGGTTATCAGCTCC	ref_964_RC	84	63	125	88	54	85	67	65	57	79
AGTATCACTGTTCTTC	ref_964_RC	40	33	70	53	45	56	39	49	45	67
GTTCATCTCTAGCTAG	ref_964_RC	33	25	49	43	22	34	23	33	28	22
TGCGCCTCTTTGTCCA	ref_964_RC	33	25	36	35	18	33	15	19	22	33
AGACGACATCATCTGC	ref_964_RC	9	2	7	5	5	6	9	7	6	5
TTATCCTTTCAGTGTA	ref_964_RC	12	8	9	16	14	16	7	9	6	12
GTAAAACTGGTTTTGT	ref_964_RC	22	14	22	30	13	22	16	17	24	19
GCGCAACACGGGATAA	ref_964_RC	639	575	863	700	611	721	556	663	589	594
CTCTTTCGACTACGCC	ref_964_RC	186	178	226	220	167	171	169	156	174	157
TACTCCTAGGTGCGTA	ref_964_RC	26	21	17	21	24	16	11	17	23	19
GGTTAGTACTATGTAG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GTATTACAACGTTTAC	ref_964_RC	90	77	103	103	57	81	65	60	62	80
GCAGTCTGGAGAGGAA	ref_964_RC	58	31	58	50	35	44	39	37	45	50
TCAAAAGTATTCCAGG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GCGTCTCTTGACTGAG	ref_964_RC	6	7	8	6	5	12	8	5	2	1
TTTGGTATGTCGGGAG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TGGCTTTCATCGGTGA	ref_964_RC	96	64	117	98	58	93	70	96	60	76
CGCTGTCCCAACAGCT	ref_964_RC	0	0	0	0	0	0	0	0	0	0
AATTAAGATCAGTAGA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
ACCCGAGACTAGAATT	ref_964_RC	89	83	123	90	94	87	94	110	98	91
GGATATACTTTGGTTC	ref_964_RC	8	10	12	4	7	7	11	6	6	9
CCTATCGATGCCTTTG	ref_964_RC	8	30	17	8	15	14	20	14	28	5
TTGTGTGATAGCACAG	ref_964_RC	11	17	19	15	7	22	14	10	15	16
CTTATTCGTGGGGCCG	ref_964_RC	133	128	183	148	122	147	142	129	128	113
ACGGGATCATAGCCCG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
ATGATGAGCGATCGAT	ref_964_RC	240	166	309	254	155	226	191	236	180	195
TTACGGTTCGGCGTTT	ref_964_RC	20	13	20	10	11	13	14	10	6	10
AGCGGCGTCAACATGC	ref_964_RC	7	8	14	12	7	8	3	13	7	10
CATACCTTCTTTCATC	ref_964_RC	37	17	63	39	23	31	34	38	23	43
TTAAAACACGTTCCGG	ref_964_RC	125	63	154	113	83	101	82	100	81	89
AAGTCATATCATGGGC	ref_964_RC	4	1	5	3	6	5	4	6	0	2
TTTCAGGTACCTCGTA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GCTATTATTGACCCCG	ref_964_RC	98	64	92	85	48	70	71	88	58	77
TGATAAGCGCCTGTCG	ref_964_RC	12	12	23	17	9	19	13	16	13	12
TTAGGCTTCAGGGCTG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
CCGCCCTGGTGTCCAC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TTAGCTTGCAGAAGGT	ref_964_RC	13	7	24	31	16	17	12	19	15	22
TTCTTCGCACTTTGAA	ref_964_RC	51	32	69	45	36	45	36	63	47	43
AGGTTGGTCAGCTGAG	ref_964_RC	82	70	94	68	85	108	70	99	79	80
AGCTTCATCCGACGTT	ref_964_RC	52	46	49	54	50	50	43	48	42	34
CGGTACTTTCTTCTGA	ref_964_RC	40	34	55	49	24	38	23	30	29	27
GCCCAGAAGACGCGCC	ref_964_RC	13	7	13	19	11	10	17	14	12	10
CAGTTCGTGAGTCATG	ref_964_RC	25	29	30	37	31	23	55	25	34	26
CTTCCACCATGTGGTT	ref_964_RC	64	57	86	54	54	52	43	66	47	60
AAAAGCTTCTCTTCTG	ref_964_RC	31	21	31	25	25	38	44	33	26	26
ATTTTACGTTGGTAAC	ref_964_RC	54	43	64	72	33	43	32	47	52	44
GTATAATGGTGCGGCA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GCAGTTTAATTCTTTT	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TGAATCCACGCCAATG	ref_964_RC	60	35	76	49	49	69	48	55	47	56
CAGTTGGCTTCTCCAA	ref_964_RC	11	6	7	11	1	5	4	5	6	3
AGTTTGTGGCAAGATC	ref_964_RC	58	58	56	49	47	45	46	65	56	54
GTCATATCGCCCATGT	ref_964_RC	80	55	114	99	47	101	68	98	62	86
TGGCTTTTCTCCTTTT	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GCGGTTGCTCTCGGTC	ref_964_RC	56	50	72	59	48	54	31	58	39	53
CGCTCCTATTTGCGAT	ref_964_RC	306	197	390	317	203	253	240	298	211	253
AGCGTAGAAAAATGCT	ref_964_RC	32	8	30	42	23	23	25	25	17	25
TCATGCTTGTTATCTC	ref_964_RC	207	162	214	212	172	188	144	200	140	169
GGTGTTTTAGTGTTAA	ref_964_RC	28	27	54	25	29	29	34	44	45	32
CTGTGCGCTTTTAATG	ref_964_RC	8	4	26	9	11	6	10	9	13	9
TATCGGGTTTTTCAGA	ref_964_RC	22	22	30	30	17	25	22	24	27	14
GTTGTGCTTATCTATT	ref_964_RC	70	90	109	98	105	78	119	101	88	85
TAGAGGGCTCCACCGC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
AAGAGTTGTTCAGGTA	ref_964_RC	38	20	37	36	24	39	30	34	30	30
TGCTGGAGATAGCTCT	ref_964_RC	11	8	9	5	7	1	2	8	1	6
CCCATTAAGATTGGGT	ref_964_RC	13	8	12	4	6	6	6	6	4	14
TTTGAGTGTATTCTAA	ref_964_RC	29	14	30	24	13	24	27	23	30	26
CCTGAGGTCTATCATG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TTGAATACGCCGTCAT	ref_964_RC	7	6	16	14	4	2	15	13	8	12
AATCCATTGGGTTCCG	ref_964_RC	82	50	98	78	50	76	53	64	48	77
CTTGTATGACACACGA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
CGATATTTCTCGTGAT	ref_964_RC	23	13	32	36	19	23	19	23	24	29
CGCATGTCGTGAACCA	ref_964_RC	3	11	2	15	8	12	4	10	5	7
GATTCCACATTCTAGT	ref_964_RC	23	5	9	8	13	7	10	7	5	6
ACAGTCCACTGTATTG	ref_964_RC	135	93	140	123	105	108	123	129	101	120
CGGTGACAGCACTTCT	ref_964_RC	26	41	26	22	48	16	55	16	35	21
CCGTTCTGTAATCTCC	ref_964_RC	13	12	19	15	10	13	15	14	11	15
TCGGTCTCTTTATATT	ref_964_RC	46	33	61	65	32	55	45	30	44	36
CAGCATGTCCTCAACT	ref_964_RC	114	82	121	118	89	91	87	115	103	121
GGAAAGATCGCATCAG	ref_964_RC	6	5	11	15	7	11	5	13	14	8
TGTTGCTCTGGACAGG	ref_964_RC	20	11	19	22	15	18	13	14	20	8
TTAGTATGATTAAGGT	ref_964_RC	16	14	19	22	13	17	22	28	9	11
GAATTTAGTGCCAGGT	ref_964_RC	0	0	0	0	0	0	0	0	0	0
ATCTCTGTCTTCTCAC	ref_964_RC	107	56	119	107	51	75	60	64	65	73
TTTATTCCCTCTTTAG	ref_964_RC	3	5	12	8	4	10	3	13	5	10
CTGAATTTGCGCTTGT	ref_964_RC	9	10	17	7	7	9	5	15	7	4
TGCATTCCGAGCTGTA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
CGAGGCTGTCATGGGC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GATCTGTATACCGGAA	ref_964_RC	114	93	151	117	87	112	81	111	101	105
CGGGATTAAGCTCAGC	ref_964_RC	1	2	4	9	2	3	4	4	2	0
TCTTTTATCGTGAAAT	ref_964_RC	38	29	33	37	25	40	18	21	37	33
AACGAACTTTGCATAC	ref_964_RC	75	62	115	101	70	76	54	68	75	81
ATCTCAACAGTCTGAG	ref_964_RC	7	15	16	28	9	15	4	17	23	17
TTGTTCCTGGTGTTTG	ref_964_RC	9	12	14	8	5	16	14	14	12	9
AGACGTGTGGGCCCCG	ref_964_RC	10	9	18	16	12	12	25	16	14	18
GTTGCGAATAATAGTG	ref_964_RC	99	89	134	127	76	125	82	82	82	103
CCGTACAGTCAAACTC	ref_964_RC	18	42	18	17	33	22	29	14	45	11
GACCGTGTGATCTGTC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
ACATGAGCCGTCTGCA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TCACCAGAGCTATGGT	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GCACAACACGGGATAA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TGTACGCGGGTAATAT	ref_964_RC	19	10	39	31	15	22	10	23	14	26
AGATTTCGCTCTCTGC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
CTACTGCCTGATGAGG	ref_964_RC	65	61	71	78	63	70	80	63	76	74
TGAAACGCTGCTCTAC	ref_964_RC	40	34	43	45	23	41	39	46	19	42
GCATGAATAACTGTTT	ref_964_RC	79	60	78	94	54	64	57	69	53	69
TGCCCATGCGAGGACG	ref_964_RC	50	28	57	50	32	43	36	51	35	39
TTTTTTTGTGGGCTAT	ref_964_RC	0	0	0	0	0	1	0	0	0	0
AATGTGTCGAAACTAT	ref_964_RC	50	29	65	67	38	54	30	57	48	46
GATGGGCCGATGCGAA	ref_964_RC	58	58	78	81	55	64	57	54	51	60
TTCTCGCTCTCTGTCG	ref_964_RC	15	8	16	3	16	20	9	9	16	12
AACAACTGCAGACCCA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TCACACATACGGGTGG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TTTCACGTGCCAGCTA	ref_964_RC	121	152	177	171	148	133	151	136	165	141
TAGCCTACCATCTCAT	ref_964_RC	14	10	14	19	12	14	8	11	12	15
ATTACGAGTATAGTTG	ref_964_RC	113	105	161	136	103	179	116	144	102	127
TTGGATGTTATAGTCC	ref_964_RC	138	96	137	113	87	104	89	104	79	96
TGTGCTATATCCACCC	ref_964_RC	92	72	101	94	61	85	58	76	74	89
TCAACTAATGTCCTTT	ref_964_RC	27	29	32	29	16	20	19	34	25	23
CGGCCTAGACCACCCA	ref_964_RC	78	71	98	76	56	68	76	72	59	79
CGACTCTATTAGTATT	ref_964_RC	115	118	131	98	115	106	150	100	140	97
TTACACGCCAGCTGGG	ref_964_RC	80	48	86	78	60	64	54	50	52	72
GACCCCTAATTGGATC	ref_964_RC	18	14	27	21	21	22	17	10	15	12
GTAATCTTGGGGACTA	ref_964_RC	27	13	30	20	18	19	18	20	18	16
GAACTTAGCTTTACAG	ref_964_RC	215	131	217	179	126	170	181	185	146	180
TTAGATTTTCTGGCAT	ref_964_RC	210	178	264	250	167	195	178	200	167	190
CCGCTATACTCTCCTT	ref_964_RC	5	15	7	11	18	5	19	9	24	4
TAATTGTCGGTCTTTA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TTATAGACCGGATTGG	ref_964_RC	10	3	13	6	10	10	7	7	11	12
CATAAATGCTGCTGCC	ref_964_RC	83	49	107	84	64	88	44	78	62	70
GCCACCTCGACGCGAC	ref_964_RC	1	10	4	3	12	8	7	2	12	2
TCAGCTGCCTGAGTTT	ref_964_RC	38	33	57	59	45	40	48	58	45	38
CTCTTAGTGTAGCAGC	ref_964_RC	1	1	0	1	1	0	2	1	0	2
GTCGTCGACCCGAGCA	ref_964_RC	0	0	0	0	0	0	0	0	0	0
GTGCCATCAAGATTCG	ref_964_RC	50	25	49	43	48	35	26	33	20	39
CGCCCATGCTTAGAGT	ref_964_RC	0	0	0	0	0	0	0	0	0	0
AGGCCTAGCTCTGGAA	ref_964_RC	27	20	34	27	25	27	19	18	24	34
CGACACGCATTGTGAC	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TGTCGATGTCACACCG	ref_964_RC	0	0	0	0	0	0	0	0	0	0
TCCTTTAGAGGTAGGT	ref_2027_RC	110	85	116	111	72	94	65	92	92	98
GACATCCAGTTCCCGG	ref_2027_RC	1	0	3	2	2	8	5	10	6	7
GTACGAAGAACTTCAA	alt_2027_RC	178	118	223	201	90	184	113	183	141	156
CGGAGCAAGGGTAAAT	ref_2027_RC	30	22	51	42	17	31	26	43	29	31
GGGTCTATCAAATAAG	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
CTTAAACCTCGCGGCA	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TCTATGGCCCCGGGGA	ref_2027_RC	97	56	119	84	55	103	61	70	41	75
TATCCCGTCTTGCCTC	ref_2027_RC	12	11	12	15	5	12	22	13	12	14
CCTTCCATCACCACGG	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TGGATTCGTTTTCGTA	ref_2027_RC	65	53	110	74	68	86	45	73	56	83
GCGGGGTTCATCCGCG	ref_2027_RC	81	65	95	67	42	76	53	67	77	58
GTATCGCGCCAATATG	ref_2027_RC	32	25	37	20	31	28	10	28	18	26
CGTCATTCCGCACCGT	ref_2027_RC	15	9	11	14	9	11	14	17	11	16
TGGATGGTCGTGACGG	ref_2027_RC	49	31	71	56	37	47	54	56	46	53
TGACCGGGCGGTAAAT	ref_2027_RC	58	30	62	67	47	47	34	38	30	35
CTTGTCTCCTAGGTAC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TTCCTCGTTCCCCTAA	alt_2027_RC	98	68	105	76	41	80	63	68	90	89
ATTATTGCCGTCAAGT	ref_2027_RC	25	21	28	27	17	25	19	20	20	16
GACGAGCGCTAGCTCC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
CGGTAGGAGTGGAGCT	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
GTTCTCCTTACGTTTA	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
ATTATTTTAGAACTCA	ref_2027_RC	126	88	181	136	83	144	82	132	114	148
GACATAACGCTATGGA	alt_2027_RC	160	127	194	153	141	156	139	175	133	129
AATCCAAAATGGGATC	ref_2027_RC	21	15	20	14	8	13	21	13	14	20
ATGCGGTGACATGCAA	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TTTGCAAACCGGATTG	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TTAGTTCCGATCCCTA	alt_2027_RC	17	15	22	21	10	13	8	31	15	9
CATATCCATCGGCGTC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TCAGCACTATAGCAAG	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TCAAGTTGGAGAGACC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
CAATTAGAGTAAATCA	ref_2027_RC	1	0	1	1	1	0	1	0	0	0
CAGTTTTTTTGACATT	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
CCTATGGACTACGGAA	ref_2027_RC	30	17	40	30	16	34	20	30	35	31
CACCGGGTTTAGGCGT	ref_2027_RC	268	170	249	224	162	206	158	206	157	212
AAATCCAGAACAGCAC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TGGTTCGTAAAATTCC	ref_2027_RC	13	5	16	11	8	5	14	7	7	14
TTAGATCATCGTTGGG	ref_2027_RC	6	2	3	4	3	5	3	4	4	7
TATCCACGTCGTACCT	ref_2027_RC	4	0	1	3	0	0	3	1	3	0
AACCTTGGGCTTCATG	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TCCGGTGGGGCGGTGG	ref_2027_RC	42	33	36	33	33	31	32	36	40	36
CTAGCCGCCTGTGCCT	ref_2027_RC	16	72	17	17	77	26	72	14	86	13
CTGGCTTTATGAAGTT	ref_2027_RC	22	23	20	25	23	12	14	18	26	24
TACCCGGATCTATTGC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TTTAATAGTGATGTCC	ref_2027_RC	52	43	45	44	43	30	35	44	27	45
TCTCCCAGTCGCACTT	ref_2027_RC	24	21	31	25	30	25	18	20	21	20
TTACTTACCGGTGTCA	ref_2027_RC	16	58	15	16	36	13	64	7	64	17
TTCCAACAGTTACGTT	ref_2027_RC	72	72	97	90	64	70	83	76	92	88
CGCGGACTGACCGTAG	ref_2027_RC	64	32	46	68	55	58	48	39	47	52
GTGAGCTTACCACGAC	ref_2027_RC	4	4	8	6	6	4	8	1	4	9
TGCGTTTTCGGACCTT	ref_2027_RC	78	51	107	103	48	85	65	89	74	75
GGGAATCGGCGGCCAC	ref_2027_RC	8	0	6	9	4	9	2	11	6	3
TAATGTCTGACGAATA	ref_2027_RC	53	30	52	58	27	57	23	38	27	36
TCTTTTATTGTACAAA	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
CGCACGGGTTATTAAA	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
ATGCGCACCGAAAGCC	ref_2027_RC	60	43	69	53	37	53	47	45	35	34
ATCTTTATCCTGAGTC	ref_2027_RC	0	0	1	0	0	0	0	0	0	0
AATTGCAATCGAGATC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
CAAGCACTCCTTCCAT	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
ATAACGGTTAGCGTAA	ref_2027_RC	7	25	11	10	15	13	17	10	20	12
CACAACATGGTTTTTT	ref_2027_RC	23	15	23	15	9	23	9	20	3	18
AGGGTCCGGGCACTGA	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGTAGTCTTACG	ref_2027_RC	13	12	15	10	5	13	7	14	7	19
TGCCGTGAGTTGTCGC	ref_2027_RC	124	102	120	108	113	91	121	87	138	90
TCGCGTACACCTCTGC	ref_2027_RC	16	21	24	25	25	19	24	12	20	12
GGGTCTAATGGGTAAT	ref_2027_RC	51	29	76	51	37	54	41	55	53	48
TGTGTATTTCCGAATC	ref_2027_RC	8	3	7	5	1	2	3	2	6	6
CATGTTACTCCTATTC	ref_2027_RC	68	33	52	44	38	35	45	48	32	39
TCAGAGGAAGATTTTC	ref_2027_RC	39	39	46	48	32	45	28	49	29	37
CCATTGATGTTGCTGA	ref_2027_RC	14	11	15	14	7	9	8	12	11	17
GATTTGGTCCCGTCGT	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
GGTCTTTTTTCCATTT	ref_2027_RC	19	9	11	13	7	14	6	22	6	10
CACGGAACAGACTGTC	ref_2027_RC	32	50	56	44	33	49	36	40	29	38
TATGACCTGGCATTAT	ref_2027_RC	85	62	144	117	68	116	83	72	71	86
CCGATCATCCTTTCAT	ref_2027_RC	6	6	10	6	1	5	7	4	8	5
ATTAAACCTGGGTACG	ref_2027_RC	25	18	18	15	19	17	11	14	15	19
CAAAGGAAGCTATTTC	ref_2027_RC	142	92	158	120	72	129	82	122	67	114
TGTTATGGGAACTTCA	ref_2027_RC	138	110	189	185	99	134	106	150	106	142
GTGTGCGTTGTCTCTT	ref_2027_RC	113	117	97	90	93	89	95	103	89	83
CTTTGGAGTAGTCCGT	ref_2027_RC	1	0	3	0	2	2	4	1	5	3
TTAGCATTCCGGGTTT	ref_2027_RC	30	32	49	45	33	43	23	46	32	34
TTTTGGATCGTGTAAG	ref_2027_RC	10	22	16	19	14	11	17	5	22	7
ATGTTGCTCTCGAAAG	alt_2027_RC	174	178	241	183	141	186	152	173	153	179
TGATTACTCACAAACG	ref_2027_RC	49	50	40	46	40	43	37	46	42	41
ATATGCGGACATGCGC	ref_2027_RC	124	88	146	102	72	117	101	102	89	105
GCTACACTGCGTTTCT	ref_2027_RC	39	21	47	30	32	39	29	21	35	30
GCTGAACGGACATTGC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TCTGGGCTATCGTTCA	ref_2027_RC	39	17	56	29	39	44	30	41	30	23
TACGCCGATTCTGTTC	ref_2027_RC	186	165	191	169	133	144	148	172	180	147
ATGTAGCGATTTACGA	ref_2027_RC	26	27	36	41	26	21	32	40	26	32
TGATGATCTCATCGGC	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TAAAATCAACCTTCGG	ref_2027_RC	0	0	0	0	0	0	0	0	0	0
TGTTCGCTCATAGCCC	ref_2027_RC	122	77	128	123	88	108	78	95	86	88
TGGTAGCAAACGACGG	ref_2027_RC	46	33	58	45	27	44	23	43	33	45
GTGAAACCTCCACAGG	ref_2027_RC	92	73	143	102	85	115	89	95	73	90
AGTCGGTATGCGTGTC	ref_2027_RC	28	19	41	26	28	22	19	24	21	23
TCTGCTCAAGTGAGAG	ref_2027_RC	4	3	4	1	2	3	1	1	1	0
TATTGATTCCGGGTAG	ref_2027_RC	12	11	12	9	8	4	9	12	13	5
TCAATTAATCATGTGC	alt_1587_upstream	18	4	18	24	5	12	9	14	2	10
CTTCACTATGGGGACG	alt_1587_upstream	205	80	260	240	61	226	95	245	76	156
TTCTCCGGTACATACG	alt_1587_upstream	46	13	45	58	12	43	15	29	24	40
GCTGCTAAAGCGTACT	alt_1587_upstream	1561	539	1944	1859	589	1557	637	1573	634	1440
TCACCACGGCTGGGGA	alt_1587_upstream	22	23	31	18	22	14	8	18	8	19
GAGCATTATATGACGA	alt_1587_upstream	319	81	378	327	91	263	127	282	115	274
TGAATTCCCCTGCCGT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGGTCCTATGCCA	alt_1587_upstream	81	28	100	82	35	80	31	84	45	74
AGTGGAAATAAGGTCT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACAAGTTTCCTCTGTT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTTATAGCCCTACAAC	alt_1587_upstream	70	24	79	68	24	48	23	57	18	57
CGAAACGGTTGTCCCT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCAGGTCCCCCAG	alt_1587_upstream	204	51	239	207	66	190	70	172	75	177
GAAGTAGAAATCCATT	alt_1587_upstream	407	127	470	448	137	373	166	422	157	362
GGCATTTAATCCCTCA	alt_1587_upstream	243	106	321	265	84	257	84	252	79	207
TAGGCTGGCTTAGTGC	alt_1587_upstream	14	5	17	23	11	29	11	14	13	16
GCTCGGGCGTCACCAG	alt_1587_upstream	69	20	80	72	26	81	24	91	20	55
CATTCTTCCGTCTCCG	alt_1587_upstream	19	4	21	17	5	22	8	18	7	18
TGGTTTCGAGACGGTC	alt_1587_upstream	108	24	124	111	46	123	37	119	39	100
CAACGACTGCCATCAG	alt_1587_upstream	109	37	118	98	42	97	52	85	42	81
AACATCCGTGTAAGGC	alt_1587_upstream	14	9	21	16	9	18	7	19	13	15
GTGACGTTCCTGTCCG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
CATTTTGTTTCCGGTA	alt_1587_upstream	838	281	1046	940	326	794	288	800	306	794
TATTTTTCTTCTCGTA	alt_1587_upstream	181	62	269	229	43	187	67	211	73	148
CGGTTCTTGGCCTAAT	alt_1587_upstream	96	42	105	106	22	75	38	75	38	80
AATGTTACTTTCCGGC	alt_1587_upstream	79	19	74	72	19	56	22	65	19	48
GTTTTTCTATTGTCGT	alt_1587_upstream	0	1	0	1	0	1	0	4	0	1
CACGCATTTATTAGTG	alt_1587_upstream	16	8	16	15	14	23	10	16	8	21
ATCTCCTCTAAACGTT	alt_1587_upstream	27	5	19	23	2	7	0	15	7	15
CCTCCGAGGGGTATCG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATTCATCTTACCGAAC	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTTCCTGCCTTCG	alt_1587_upstream	67	48	90	116	48	69	60	102	83	66
GTCGGTAGGGTTCAGG	alt_1587_upstream	97	35	114	119	41	110	45	109	33	81
TTCGTTTTGGGTGTGC	alt_1587_upstream	100	57	122	91	52	99	32	92	25	87
CTTTTTTTTGTCATCC	alt_1587_upstream	38	19	44	35	15	25	15	28	18	34
GCTGCGTGGCAGACAG	alt_1587_upstream	24	6	33	30	2	17	7	25	15	16
TCAGTAAGTCTGTTCT	alt_1587_upstream	113	59	192	178	63	146	76	138	46	144
ATTCGACCGGGAGCAT	alt_1587_upstream	127	53	190	152	46	151	66	132	56	111
TACAGTTTTGATTACG	alt_1587_upstream	119	42	160	135	48	113	39	121	52	108
TGTTTTGCTCGTATTC	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCGTTTCCGTGCG	alt_1587_upstream	142	30	153	145	44	110	38	87	46	109
ACTATGAGATCGCCCT	alt_1587_upstream	214	70	261	239	79	187	88	206	81	196
GACAGCCAATTTGTCC	alt_1587_upstream	43	28	67	57	50	40	32	49	31	41
GAGGTGAGACCTACTG	alt_1587_upstream	403	161	494	417	163	358	166	316	197	314
ACTCGTATTGCTGCTT	alt_1587_upstream	40	20	75	52	18	44	16	43	15	55
GTTCTCTCATTGCTAT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTGGGGCATCACG	alt_1587_upstream	53	25	81	74	22	63	35	56	25	62
GTAATTACATCGTTCT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTGTCGTCTAACC	alt_1587_upstream	146	64	172	180	74	176	69	170	80	134
TGCTAGTTGGCACTTA	alt_1587_upstream	63	24	71	71	15	52	24	42	23	56
TAGGCCACTGAAGTAC	alt_1587_upstream	153	57	164	163	81	121	62	117	78	116
GTTTTTTTTCAAGTTA	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
ACAGGGTCAATTCTAA	alt_1587_upstream	61	19	77	45	24	41	15	54	26	41
TCTTGCGAATAAATAT	alt_1587_upstream	146	63	178	155	55	122	60	145	53	138
AATCGCTCGACTGGCT	alt_1587_upstream	1	3	2	3	4	1	1	3	4	0
AGGTCTTCTCGTGTAA	alt_1587_upstream	32	7	36	30	22	47	14	46	10	32
AACTTATGTGCCCGCT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTTCGAACCCATA	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTATCGTAGCAGCATG	alt_1587_upstream	16	10	14	12	4	22	6	15	3	20
CTTAGGTTTTTATCAG	alt_1587_upstream	452	185	605	553	158	468	196	507	213	412
TGCGTTTCCTTAATCA	alt_1587_upstream	230	91	315	236	86	215	90	224	74	220
GCGGGCATAATTCCTA	alt_1587_upstream	21	6	40	21	10	26	8	31	13	24
CCTTTACGATTGCAAT	alt_1587_upstream	42	22	61	63	11	49	28	66	28	46
TCTCTGTTTAAGTCAA	alt_1587_upstream	61	25	62	51	12	62	24	58	28	57
CGATCTTGGTATGTGG	alt_1587_upstream	25	14	27	37	15	30	15	29	10	21
AGTTGGGGTACCTCAT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGTACGAAACATG	alt_1587_upstream	36	22	34	35	29	40	31	29	34	34
CCGTGATAGGAGTTCT	alt_1587_upstream	104	23	122	93	21	90	25	81	42	67
CCCACTAGCCCAGCAA	alt_1587_upstream	103	23	138	136	33	113	49	102	36	91
TACTCAGCTTCCAAGT	alt_1587_upstream	36	16	40	32	9	27	22	22	20	35
TCCGACCTGGTCTGGA	alt_1587_upstream	32	11	49	29	10	23	7	33	11	22
CACTAGGGATTTGTCG	alt_1587_upstream	30	12	31	30	12	33	22	47	13	30
CCGGGACTATCAGGGG	alt_1587_upstream	54	17	55	69	15	43	22	45	16	51
CCTGTCTTTCGTCAGT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGTAGATTGGGTA	alt_1587_upstream	45	24	70	69	21	61	25	64	36	52
TTTTGTTTCGGGGTGC	alt_1587_upstream	139	52	177	172	56	156	51	168	62	116
TGTACCCCCCAGATGG	alt_1587_upstream	13	7	8	20	5	17	14	19	12	12
CAAAATCACTTATTAC	alt_1587_upstream	319	92	385	381	104	323	114	300	152	267
ATCAAGACGGCATCCT	alt_1587_upstream	15	9	27	17	6	15	12	23	3	19
AAGTAGTTATCTAGTA	alt_1587_upstream	174	70	240	198	48	173	66	156	64	145
TCACGGCTTGCTAGTA	alt_1587_upstream	85	27	109	92	22	115	37	73	27	59
GTCCGGAGTTTTGATG	alt_1587_upstream	50	22	65	59	16	48	20	57	23	32
CGAGTGGCCCGGTCAG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCGATAGCGCATC	alt_1587_upstream	100	35	111	115	53	111	44	95	33	83
GCCGACATGGTACAGA	alt_1587_upstream	25	10	36	21	15	22	9	27	5	19
CATTTTGTTTCTGGTA	alt_1587_upstream	0	0	3	0	0	0	0	1	0	0
TTCACAGTCTAAGCTC	alt_1587_upstream	50	20	44	48	20	37	24	39	19	33
ATATGTGAAAGCCTGA	alt_1587_upstream	275	98	313	275	101	222	107	245	77	223
TAATTGATACAGATCT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
AGTTAGCTCCTTAGTC	alt_1587_upstream	38	16	50	32	16	50	8	25	11	29
CGTACCGCTTTGCGAG	alt_1587_upstream	18	8	16	16	5	11	5	18	4	7
GGCTTTGATCGGGAAT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
GCACCATCTTCTTATT	alt_1587_upstream	3	7	2	7	5	8	0	3	4	5
GTCATCTCTTTGGTCT	alt_1587_upstream	185	78	217	183	88	167	68	160	79	168
GCCGTAGCTAGATTTT	alt_1587_upstream	123	26	111	118	37	95	43	91	36	94
AGTGCTTGGAATCTGC	alt_1587_upstream	11	5	17	8	4	18	7	18	9	13
CGTGCCTCGTCGAGCG	alt_1587_upstream	109	34	118	113	33	94	40	104	50	89
TGGCGCCCGGAACCTT	alt_1587_upstream	267	77	327	306	88	278	108	221	95	240
CCCAAAAGACGTTGGA	alt_1587_upstream	204	84	235	204	77	192	78	215	68	169
CACAGTGTGTTATCGT	alt_1587_upstream	75	50	103	100	42	70	50	89	68	69
TCAACTTAATTTACGC	alt_1587_upstream	85	48	91	88	41	69	30	61	44	71
TCGGAGATTTTCGTAT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCTTGGCCCTGTG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TATGGTTGCTGCAGTC	alt_1587_upstream	193	122	253	180	87	172	103	200	101	156
CTTCAACGCGTATGGC	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTCCTGAGCTAC	alt_1587_upstream	56	12	59	59	21	59	14	38	18	45
GCCCTTCCAGGGAGGC	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGCTTAGCATAGC	alt_1587_upstream	114	30	116	96	31	85	45	112	50	101
GAGTATCCGAAGACTT	alt_1587_upstream	78	18	65	63	29	62	18	55	29	61
TATCAAACGACTACGG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATTTACATGCTCGAGA	alt_1587_upstream	80	20	97	87	33	61	25	75	27	62
ACATTTGCTTGTATGG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGATAAAATCGTA	alt_1587_upstream	36	14	65	48	18	44	16	38	24	49
CGGTCGGTGACCGTGT	alt_1587_upstream	25	25	26	30	30	18	24	12	23	20
TGATTTAGCCAAGGTC	alt_1587_upstream	39	7	35	25	7	30	14	28	12	22
CTAGATCCCGGGTTGG	alt_1587_upstream	224	93	262	287	119	191	106	217	81	201
ATGACAGGGGTCTTCG	alt_1587_upstream	260	95	310	279	92	239	101	265	113	238
AAGCGGATCATCGACA	alt_1587_upstream	108	25	102	94	29	79	26	87	33	65
TGACGTACTGTGAGTT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
ATACACCCTCGGTGGC	alt_1587_upstream	167	81	140	115	67	114	75	97	44	106
AAGCGGACTGAGTCTT	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGCTTTCTGAAC	alt_1587_upstream	45	9	45	46	22	41	16	36	28	37
TATTACTGGTATGGGA	alt_1587_upstream	311	90	356	345	100	318	127	299	110	273
CATTGCCCAGAACCTA	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCTCGGGACATCA	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGTTTTGGGGTTC	alt_1587_upstream	93	31	88	78	27	58	25	86	27	58
ATGGTTCTTCGTATTA	alt_1587_upstream	115	57	147	126	47	144	58	118	52	120
TCTTGTGGAGGGCCTT	alt_1587_upstream	21	5	13	16	7	11	1	7	6	13
GCGCGATCAATTTGAC	alt_1587_upstream	32	6	46	37	16	43	7	41	9	33
CGTGTTGGCCGTGGTT	alt_1587_upstream	218	94	251	240	79	203	75	217	79	172
GGGTACAGACCGGCAG	alt_1587_upstream	75	12	66	50	20	51	15	71	22	60
AATCACCGTAATAGGC	alt_1587_upstream	154	38	161	136	42	122	54	133	52	116
GATATGGAGCTTTTTT	alt_1587_upstream	200	68	241	220	51	229	86	238	87	218
TATCTACTCCTCCGGG	alt_1587_upstream	16	7	41	21	11	21	5	24	17	24
ACCGTCTCCACTTCAT	alt_1587_upstream	19	12	26	21	7	28	7	16	6	16
CCGCCATCCCCAGCTG	alt_1587_upstream	113	94	151	115	81	121	78	116	89	89
AAACTTGAACGTGTAA	alt_1587_upstream	42	20	43	44	16	39	13	42	17	31
GCGCTTACAACCGGGC	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
CTAGAACTCTCTTTTC	alt_1587_upstream	3	2	2	0	0	4	2	11	0	2
CGCGACACGCGCCCGA	alt_1587_upstream	18	4	13	17	10	17	6	12	2	13
CAGCTTTCTGACTTTT	alt_1587_upstream	155	52	181	148	57	163	55	149	47	130
GGTGTGGTGTTGTAGT	alt_1587_upstream	132	44	185	183	49	143	46	136	57	121
TGCCTTTAACTTTTCT	alt_1587_upstream	56	15	53	48	16	34	19	42	15	28
GGTAGCCCAAAGCGGG	alt_1587_upstream	0	0	0	0	0	0	0	0	0	0
GTGATGCGACATCTCT	alt_1587_upstream	147	58	214	203	72	135	61	164	68	139
TAACAGTCCTGCGCAC	alt_1587_upstream	159	66	247	208	81	146	68	172	84	157
ACAGCGATTTCTCGTA	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGTAGCATAAGCA	alt_5038_upstream	32	7	55	35	12	31	22	50	27	31
AATTGGCGTTACCTAT	alt_5038_upstream	247	79	305	255	114	240	119	267	105	243
CTTTTGAGGAGTTGGG	alt_5038_upstream	14	7	26	28	11	22	18	17	9	14
CCGAGGATTGGCTTGC	alt_5038_upstream	11	2	9	8	2	8	1	5	7	9
AGTAACCTGCCAGCAC	alt_5038_upstream	61	12	75	50	19	54	30	45	23	47
GGTGAATGCAGGAGAT	alt_5038_upstream	100	37	96	101	43	84	36	80	39	100
CTTTTACAGTTGCCAC	alt_5038_upstream	295	124	357	322	131	285	152	282	124	287
TTACTGAGTAATGTCT	alt_5038_upstream	97	30	123	74	33	76	23	86	31	68
CTCGGTGCTACTTGGC	alt_5038_upstream	25	27	26	20	31	18	27	10	39	20
AAAATTTTTGGATTTG	alt_5038_upstream	77	19	74	58	23	63	28	61	22	49
GGTTAGTGACCAGATG	alt_5038_upstream	42	44	44	27	31	35	28	35	35	31
GCAACATCGTAATGGA	alt_5038_upstream	10	4	11	4	3	10	2	14	4	8
TTCCAGGTGTTATTTC	alt_5038_upstream	4	5	6	9	1	5	1	4	6	4
GTGGGCATGTCCAATC	alt_5038_upstream	66	27	69	69	23	38	20	46	33	58
GCGACACTAGGTGATT	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGTTGAAAGCACA	alt_5038_upstream	323	169	429	285	111	326	155	222	177	281
CAAATACTGAGGGTCT	alt_5038_upstream	10	19	7	8	13	6	19	14	14	12
TTGTATACGACTATCC	alt_5038_upstream	57	34	91	56	32	60	38	48	38	47
AGTTTCAAATCATTTT	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCCACATTCTTTG	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
GTAGACCTTCTCTATT	alt_5038_upstream	33	29	62	46	18	51	26	42	24	35
ACGCTTTGCAGTTGGA	alt_5038_upstream	30	14	32	27	14	39	17	22	6	33
ATGTAATAGTGCTAAG	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGTTCTAACAATT	alt_5038_upstream	9	4	17	14	5	17	6	11	4	4
ATGCTGGGCTACATGC	alt_5038_upstream	19	9	24	22	8	21	11	20	13	22
CCGCGATTAGTTTCTA	alt_5038_upstream	246	95	247	232	69	204	99	205	69	175
CTTCAGAAATTGTGGC	alt_5038_upstream	69	26	83	62	24	58	29	71	40	56
ACCTCACTCTGATACC	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TATTGGCAACGCTACT	alt_5038_upstream	17	6	23	9	5	12	4	22	7	11
GCAGTTCATGATTGTG	alt_5038_upstream	187	109	219	185	86	208	107	179	97	215
AATCCACCGCAGAATA	alt_5038_upstream	164	61	208	196	82	166	70	154	60	144
ATTGTTGGCTAGGGTT	alt_5038_upstream	119	64	151	122	64	100	63	110	45	93
TGTAATATCGGCTGTA	alt_5038_upstream	55	20	49	46	26	46	17	39	13	46
GCGTTTCTGGCCTTTG	alt_5038_upstream	100	58	111	107	43	103	63	94	44	87
TTGAATGCGAGTACTA	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGGGCTGGATCGG	alt_5038_upstream	22	12	39	26	13	30	22	23	15	17
GATTGTATGTCGGTGC	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
GGATTGATTTTATTTG	alt_5038_upstream	37	11	48	47	16	25	14	21	17	31
TTTTGTTGTTCTGTTG	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCTAAGCGTAATC	alt_5038_upstream	60	35	83	68	25	71	38	53	28	55
CGTAAAGGATCGCTCG	alt_5038_upstream	21	7	50	35	14	22	10	27	17	31
TGGACTTTCTATCATG	alt_5038_upstream	44	13	32	41	18	28	22	19	22	39
TCACTATAAAGGTTTA	alt_5038_upstream	88	49	109	69	43	92	44	87	42	88
GTTATTCTACTCAAAC	alt_5038_upstream	750	348	923	746	329	722	387	698	333	605
GCTGTTGGATACGTGG	alt_5038_upstream	246	96	244	257	106	189	98	240	109	201
TCTCGTATTTAATGTT	alt_5038_upstream	87	26	107	101	52	77	33	79	32	73
TTATTTGTTTTTTCTG	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTGGTGTAGGGGG	alt_5038_upstream	50	19	47	45	15	48	18	35	19	40
ATTGCAATTGCCAGCA	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCCCATCCCCGCT	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TCATTCATGGCCATCC	alt_5038_upstream	46	28	65	49	16	46	15	39	21	43
TCTCGTTGAAGGGCCC	alt_5038_upstream	44	15	54	48	17	36	16	39	21	38
TAGTCCGGGAATGGCC	alt_5038_upstream	203	54	206	147	85	162	82	177	57	172
TGTAGCGAACCTTTTT	alt_5038_upstream	399	157	482	387	143	392	169	408	150	345
TATTTCTATGCGTTAG	alt_5038_upstream	23	8	25	19	9	35	12	21	9	29
TTTGGTAGACACTAGG	alt_5038_upstream	15	5	24	20	14	15	8	8	7	9
CACGCCGATTAGAGCC	alt_5038_upstream	552	221	607	583	174	446	227	501	238	481
GGTCGTCTGGTGGACC	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGGTTCGAGTTTT	alt_5038_upstream	40	17	65	41	28	43	29	42	20	35
GGCTCTAGGTTAGTGT	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TACCAGTTTGTCTAGA	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
TGGATTTTTAGTTATA	alt_5038_upstream	108	44	152	143	64	97	62	135	46	111
TGCGTCATGGTATTCT	alt_5038_upstream	16	12	23	20	7	31	5	14	4	12
GTCCTTTCTACTTAGT	alt_5038_upstream	3	1	1	2	1	3	2	1	1	0
GCGATCGGTCCGGGGT	alt_5038_upstream	214	96	258	209	80	243	91	198	80	189
ATTTAGAGCCAAAACC	alt_5038_upstream	480	204	599	498	234	483	230	442	221	378
ATTAATCAAAACAGTC	alt_5038_upstream	6	8	15	32	3	16	8	10	4	17
GAAGCCAAGGGAATCA	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCTGTACCACCAC	alt_5038_upstream	31	11	36	37	17	28	8	15	11	14
TTTCAGTACATTGCTG	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
ACGTAATCGCCTGGAC	alt_5038_upstream	94	55	99	97	49	71	40	79	43	78
TGCCAAGAGAGCGTTG	alt_5038_upstream	67	31	116	94	39	86	29	58	47	78
GTCGGATTGGTAATAG	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTAAAACTCGGGT	alt_5038_upstream	117	41	153	111	55	129	51	125	44	87
ACCCTCATCATATAAG	alt_5038_upstream	487	201	538	475	188	406	212	420	234	396
GCTCGTTTAAGCTCAA	alt_5038_upstream	45	25	65	61	36	46	31	50	25	48
TCTATGGTTGTTGTAT	alt_5038_upstream	108	58	103	92	45	96	37	82	47	72
TCTCCACCAGTCCGGG	alt_5038_upstream	162	98	171	174	101	123	78	135	96	132
CGGGACTCGCCCTTGA	alt_5038_upstream	98	36	86	72	42	85	27	76	38	73
GCCAGTATCTTCAATC	alt_5038_upstream	22	13	39	41	17	22	21	24	11	25
GAAAAGGCCGTATAGC	alt_5038_upstream	156	47	171	154	61	145	51	141	51	119
GGTTTCTATTTGGGGC	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCTTATAGTTCTA	alt_5038_upstream	85	45	121	104	38	85	29	99	49	71
ATACGCCAGAGTTCGT	alt_5038_upstream	46	22	56	40	10	33	19	43	15	32
CCGATTTGAAACAGGC	alt_5038_upstream	50	21	47	41	28	39	23	46	17	40
TACTATATCAGAACTA	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGCATTTGCTATC	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGAAATTCTCTAG	alt_5038_upstream	0	0	0	0	0	0	0	0	0	0
AAGCCTCTCGATTATC	alt_5038_upstream	100	37	104	94	40	74	40	76	50	84
CTCGCGTTCTTACGCT	ref_5865_new	0	6	3	3	7	5	6	1	4	5
TTCTTTTCCTTAATGC	ref_5865_new	33	26	35	34	28	30	40	29	25	24
TACAAGGGTGGACTGA	ref_5865_new	0	0	0	0	0	0	0	0	0	0
TAGTAACTTAGCACGC	ref_5865_new	12	6	19	12	14	8	13	8	13	10
TCTATAGCCACTCTTA	ref_5865_new	20	35	26	22	32	12	33	13	37	17
GTGCAATCTGCTCCAT	ref_5865_new	2	4	2	2	4	3	0	4	2	2
TCTGAACCGGGCACAT	ref_5865_new	9	7	24	12	19	18	16	12	15	14
GAACACGCTAAATTCG	ref_5865_new	28	23	45	23	36	33	27	35	49	26
TGCGACTAATACGTTT	ref_5865_new	95	137	154	123	166	137	115	115	140	114
ATTATCATACGCAGTT	ref_5865_new	30	29	60	32	46	33	53	34	51	27
GCTCTCTTAACACTGT	ref_5865_new	5	3	4	3	4	2	6	3	7	2
TATTCTTGTCCTGGCC	ref_5865_new	14	14	15	16	17	7	15	13	18	8
GATGCGTTTACGGGCC	ref_5865_new	1	0	5	5	2	5	2	4	8	5
TCGTTGTAAGTTCCAG	ref_5865_new	4	4	3	2	2	6	2	6	5	2
GAGATGCTTCTCTAAG	ref_5865_new	0	0	0	0	0	0	0	0	0	0
AACCCTGTTGCTTCTC	ref_5865_new	62	74	47	74	69	54	59	40	74	53
CAGCTCCCGGCTGGCC	ref_5865_new	23	32	24	25	23	28	23	32	33	30
ATCGTAGATTGGAGGA	ref_5865_new	0	0	0	0	0	0	0	0	0	0
GGTTATAGCTCAGAAG	ref_5865_new	7	3	4	4	6	3	4	4	6	4
CTTTCGATAGGAGGTA	ref_5865_new	26	21	17	16	20	20	24	24	26	8
CCGGTTCTTCTGGGGG	ref_5865_new	27	43	18	22	37	21	21	27	36	23
TGTGGTCTTTCTAGTA	ref_5865_new	17	29	17	21	15	21	18	19	26	11
CGCATAGTGGGGCGGG	ref_5865_new	7	7	7	5	11	5	14	11	9	0
CGTGACGTCTTTCCCC	ref_5865_new	19	13	13	6	10	14	15	9	10	6
GCCATTAGAGGACGAA	ref_5865_new	0	0	0	0	0	0	0	0	0	0
AACCTGGTCGAAGCAT	ref_5865_new	123	88	149	104	124	112	121	95	101	93
AGGAACTCTCATTGGT	ref_5865_new	15	22	16	14	9	11	25	10	10	15
TTCATTATTCATGTGA	ref_5865_new	89	100	94	76	68	77	92	81	99	78
GTAGTTCTTCCCCTGC	ref_5865_new	0	0	0	0	0	0	0	0	0	0
GTATAACCGCAAGTCT	ref_5865_new	27	28	44	36	31	40	41	31	35	28
AGTTAACAAAATTCGC	ref_5865_new	158	175	200	174	227	131	194	159	202	145
GTTTAAATAAGATTAT	ref_5865_new	4	4	4	10	7	7	4	1	9	1
GTTAGCTGGAATCTCA	ref_5865_new	7	8	11	6	7	5	4	7	8	9
ATTCACAGAGTTGTAT	ref_5865_new	50	62	42	37	69	43	65	38	73	33
TACCACGTTGATACAT	ref_5865_new	0	0	0	0	0	0	0	0	0	0
TCTTAAACATGTAATG	ref_5865_new	77	101	103	86	97	74	74	66	106	78
TTAAAGTCTGCGAACA	ref_5865_new	13	5	17	9	14	7	13	11	26	10
AGGAGCTTACTCCCTT	ref_5865_new	1	1	0	0	0	1	1	1	7	0
CGACATCCCGCTGCGT	ref_5865_new	4	2	3	0	2	1	3	1	0	0
ATTAAAGGATAGCTCC	ref_5865_new	13	13	13	13	10	14	15	7	13	11
AGGCGTACGTCTCTCC	ref_5865_new	0	0	0	0	0	0	0	0	0	0
GCTTTTCATGGGGGTG	ref_5865_new	50	70	56	40	64	37	59	53	78	34
GGATTTCGCATTCATT	ref_5865_new	34	52	43	41	28	44	48	42	57	33
TCCGTTCTTAGCACTG	ref_5865_new	22	18	17	20	26	16	29	13	19	17
GTCTCTGCTGAGTTGT	ref_5865_new	0	0	0	0	0	0	0	0	0	0
AACTACACTGGCGCGG	ref_5865_new	18	9	18	10	12	10	10	18	18	13
CGAGTTTTATCGGCGA	ref_5865_new	0	0	0	0	0	0	0	0	0	0
AAAAGCATTTAAGCAC	ref_5865_new	32	29	23	22	28	30	29	30	34	23
TCTGGGGTGCTAGGAA	ref_5865_new	14	15	14	26	8	19	12	24	23	18
CATTCCCTATCTTCCC	ref_5865_new	230	230	211	230	275	196	305	217	306	180
CTTCAATATCGGACAG	ref_5865_new	51	47	58	48	50	40	65	39	52	39
GAATACTTTTCGGGAG	ref_5865_new	80	104	69	62	59	78	65	48	94	56
CCACAGTTCCGCGTTT	ref_5865_new	0	0	0	0	0	0	0	0	0	0
GGGGCCCAGGTATGGT	ref_5865_new	28	45	57	35	37	44	37	30	54	26
GTTTATTTATCCCGGT	ref_5865_new	71	67	78	64	61	56	57	65	79	64
TCCTCCCTCAGTATTA	alt_6020_new	28	65	25	36	62	17	65	34	54	17
CGTCCTCGGCTGAGTA	alt_6020_new	11	17	17	8	10	6	7	6	16	10
TAATTCCCTTGAGTTG	alt_6020_new	58	65	61	55	66	49	71	45	60	50
TTTCTTGTTGCCCCCG	alt_6020_new	0	0	0	0	0	0	0	0	0	0
AGGGACAATATGGGGT	alt_6020_new	38	36	54	50	41	41	57	31	60	30
ATGAGCCTCCGTCAGG	alt_6020_new	43	45	49	47	58	42	47	41	55	27
TTTGAGTCTCTCCAGT	alt_6020_new	86	132	96	84	131	75	138	79	126	80
TCGATACGCCCACTCT	alt_6020_new	266	267	299	256	286	255	261	244	355	224
CCGGCAGCAAGAAACC	alt_6020_new	94	124	116	102	127	95	118	67	118	72
CTGGTTCTCGTAAAAT	alt_6020_new	5	0	10	4	4	5	9	5	7	2
GCCTCCACAACGGGAT	ref_6020_new	25	27	23	22	35	27	15	26	31	21
CTGTCGCGGGTATGAC	alt_6020_new	64	98	89	71	106	56	94	70	85	59
CGTATATAGTTTAAGG	alt_6020_new	10	18	25	23	15	13	28	14	12	16
GGCTGTGTAAACCAGG	alt_6020_new	92	78	105	61	100	69	82	61	108	57
GGATCCTGCTGTTGTG	alt_6020_new	21	27	26	19	19	26	31	18	28	24
ACACAAGTTTGAGCGA	alt_6020_new	49	54	56	43	62	45	75	37	59	42
TATCTCTTCTGTCGGG	ref_6020_new	338	321	389	306	291	312	338	281	370	313
CCGGGGTTGATATCAT	alt_6020_new	9	11	16	3	15	14	7	5	19	8
GCTAGTCTCCCTGGAG	alt_6020_new	0	0	0	0	0	0	0	0	0	0
TCTGACATTTGACTGT	alt_6020_new	10	13	15	7	14	11	17	12	11	6
CTGCAACATATAATGC	alt_6020_new	8	11	8	7	10	5	5	4	8	6
TGCGACGTTCCGAAGT	alt_6020_new	63	101	82	69	93	72	73	74	90	68
GAATTATTGTGGAAGC	alt_6020_new	88	106	104	92	91	75	88	80	99	97
CTTTGTTACGATGTTA	alt_6020_new	33	26	34	27	29	17	23	29	37	29
TACCACTGTTCTGTGT	alt_6020_new	0	0	0	0	0	0	0	0	0	0
TATGCGTTCTTATTTG	alt_6020_new	38	21	53	56	32	40	31	41	41	33
CTGGAATTGTTGTTAC	alt_6020_new	54	63	69	54	69	48	51	54	68	43
TCGGGTTATGCGGGCC	alt_6020_new	0	0	0	0	0	0	0	0	0	0
CATTCAATATGGCGCC	alt_6020_new	336	202	399	338	262	321	230	325	230	316
GCAGAAGTACTCATAG	alt_6020_new	4	13	1	9	2	4	3	3	6	9
ATTGATTTGTGCAAAC	alt_6020_new	0	0	0	0	0	0	0	0	0	0
AGGTTGCGAACTAAGG	alt_6020_new	10	14	15	20	17	12	17	8	13	11
CTATGGCAGGATATCG	alt_6020_new	13	14	11	8	9	9	22	8	10	4
GTGGGAGGTATAAACG	alt_6020_new	21	37	31	31	30	17	25	14	34	24
CGATTCAGTCACAGCC	alt_6020_new	74	100	92	72	102	65	117	85	102	70
TCCGACCGGCCCGGGT	alt_6020_new	0	0	0	0	0	0	0	0	0	0
TTTTCCGAGTAAGGAC	alt_6020_new	10	6	10	2	9	10	13	7	11	6
ACTGATAGTGCCTATC	alt_6020_new	17	28	23	17	28	23	25	26	32	16
CACGTGAAAGATAATT	alt_6020_new	65	75	84	67	89	68	60	57	106	66
GGCGGTCACCCTCCGG	alt_6020_new	41	57	41	45	37	41	52	43	61	33
GTAACTTCTGTGTCGG	ref_6020_new	41	42	60	53	46	70	42	53	44	40
TAAATAGGGCCGCTTC	alt_6020_new	0	0	0	0	0	0	0	0	0	0
CCCTTAGTTCTTAGCG	alt_6020_new	0	0	0	0	0	0	0	0	0	0
GTTAACCTCGATACGT	alt_6020_new	30	33	30	17	28	29	28	21	37	22
GGTAGGGGCGCCGCAT	alt_6020_new	0	0	0	0	0	0	0	0	0	0
TAATCATAAAGTAATT	alt_6020_new	7	9	8	4	7	9	6	6	5	1
CAGAAATTCCGATTCT	alt_6020_new	39	31	39	42	47	28	28	32	36	28
CGGGTTCTTGACGGGG	alt_6020_new	0	0	0	0	0	0	0	0	0	0
TGATCGGCCAAAGGGT	alt_6020_new	54	54	55	52	66	48	62	42	92	39
TTGGCGGTGCTACGGC	alt_6020_new	11	26	23	16	35	23	15	22	18	19
GAAAATAGGCCTTTAA	alt_6020_new	31	32	42	35	26	30	36	30	45	28
AATTCAGTGAAGATCT	alt_6020_new	0	0	0	0	0	0	0	0	0	0
CATATATACCAACTGG	alt_6020_new	0	0	0	0	0	0	0	0	0	0
CTCTACGTTTGAGCGT	alt_6020_new	21	36	35	29	21	23	29	18	23	24
TCTATACGCCCACTCT	alt_6020_new	0	0	0	0	0	0	0	0	0	0
CCGCGGTACCTCAGCC	alt_6020_new	0	0	0	0	0	0	0	0	0	0
AACTTTATTTTGCAGC	alt_6020_new	20	15	14	21	18	13	12	14	18	16
CCCGACACAGCTACTC	alt_6020_new	9	16	13	12	14	4	28	11	10	7
CGATAGCATCCAAAAG	alt_6020_new	21	23	24	16	28	19	36	22	28	17
TGTATCGGTCATCCCA	alt_6020_new	0	0	0	0	0	0	0	0	0	0
GAGATTGCTAGGGACT	alt_6020_new	0	0	0	0	0	0	0	0	0	0
ATCAGCGGTTAACACG	alt_6020_new	0	0	0	0	0	0	0	0	0	0
ACTAGATAGTTAGGTC	alt_6020_new	14	19	13	8	27	14	16	10	24	4
GAGACGCTTTCCTTTT	alt_6020_new	22	32	34	24	31	28	24	33	35	33
CGTTTATACTCCACCT	alt_6020_new	40	50	36	25	54	27	46	29	41	18
TAATCTTTTAGAGTTG	alt_6020_new	22	28	55	36	30	17	39	17	41	18
TGTTGGTCCTATGTTA	alt_6020_new	14	22	18	14	26	14	19	17	27	15
TCGCTTTCAATGATGC	alt_6020_new	76	67	79	71	112	64	116	80	108	71
CCTTTTCGATCTAAAT	alt_6020_new	16	19	20	10	25	20	36	23	44	15
TGGTCGAATTCCCGAC	alt_6020_new	10	22	20	15	13	11	15	9	20	8
TCGTGTTAGTCCGGCG	alt_4820_fdr	64	104	52	63	102	49	96	66	119	48
CTCATACTTGTCTTCC	alt_4820_fdr	17	42	33	34	41	37	21	24	32	24
GCCGTGCTTAGGATCC	alt_4820_fdr	3	4	3	2	0	1	5	3	1	1
CTTCAGCACTGTTCGT	alt_4820_fdr	10	46	13	24	54	11	60	9	52	30
CTTCCAGAAGTACCAT	alt_4820_fdr	66	104	83	51	84	67	91	59	99	47
TGTTGGAATGGCCAAT	alt_4820_fdr	47	38	67	44	38	43	46	38	35	37
CAGAATACATTAACTT	alt_4820_fdr	11	22	23	14	35	16	30	16	23	15
CGACATTACATGGGGA	alt_4820_fdr	7	5	10	13	9	2	11	4	6	5
CTGGAACACGGTTGAC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
ACTATACGATTAATAT	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTGAACTCGGGTTGAG	alt_4820_fdr	37	37	25	23	47	25	27	17	32	33
CCCGAGCACGGAGATG	alt_4820_fdr	0	1	2	1	2	0	0	0	0	1
CTCGTCGGTGTGGCCG	alt_4820_fdr	41	42	52	37	60	54	72	43	67	35
AGATCCATAGGATTTT	alt_4820_fdr	7	18	21	10	20	10	23	13	14	13
TGCCATACATGAGTGT	alt_4820_fdr	21	36	12	21	43	21	41	18	40	14
TAGTGGTGAACTCGAC	alt_4820_fdr	5	13	12	2	2	2	6	2	8	4
AGAACCGACTATTTTA	alt_4820_fdr	17	16	17	13	24	15	27	15	23	10
CTGTTCCTCTATGGCT	alt_4820_fdr	46	69	52	39	71	43	82	48	63	30
TGGTTGCATGGCTCGA	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
GATCTTAACACCTTCA	alt_4820_fdr	35	36	31	20	35	29	51	29	48	21
AGACCGGTTACATCCG	alt_4820_fdr	46	58	48	43	74	42	43	37	58	38
TTTTCTGCTCACTTAT	alt_4820_fdr	24	34	24	20	42	18	28	26	35	18
ATGTGCCTCAGGGTAT	alt_4820_fdr	30	36	36	28	27	32	27	27	27	27
TTGGTGTATTCTTCAT	alt_4820_fdr	27	34	23	28	25	29	41	34	45	23
CAGTCATGACATTTAG	alt_4820_fdr	6	10	10	14	14	11	8	8	24	10
ATTTCCTTAGCCATGG	alt_4820_fdr	13	25	31	20	29	16	30	13	38	36
GTTTTATGTCACTGTA	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
AAATACTGTATTTTAG	alt_4820_fdr	54	69	73	71	88	65	66	66	89	61
GCCCCCTGTTATAAGT	alt_4820_fdr	17	15	13	11	13	11	21	18	15	8
ATGCGCATGTCGACAA	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGTCTGGACGCCC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
GTTGAATGTTACCTAT	alt_4820_fdr	15	28	16	9	22	15	19	8	29	14
GCTTGAATTCTGCGAA	alt_4820_fdr	57	87	62	44	54	44	66	42	64	33
TTGGACTTATTCGTAT	alt_4820_fdr	11	30	13	11	16	15	25	10	29	10
CACAGGTACCCTTTCA	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCTGTTAGCGTGC	alt_4820_fdr	2	5	1	6	12	1	8	1	5	1
TGCCGCGTTCCAGTCT	alt_4820_fdr	3	5	4	2	4	3	8	4	6	1
CATGGCTACGACGCGC	alt_4820_fdr	17	23	5	11	11	15	17	7	20	9
AAGCTTTCCCACCTTT	alt_4820_fdr	9	9	3	2	7	3	3	7	7	5
CTTTTAAGCTAGTCAT	alt_4820_fdr	216	318	252	222	321	210	356	233	347	224
ATTCGGGCGCTGTACC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTTGAACCATTGG	alt_4820_fdr	15	13	10	9	22	9	21	14	11	4
TATATCGGGCCCGGCC	alt_4820_fdr	46	43	48	37	48	40	59	38	64	42
CTCGAGTGTTTTTTTA	alt_4820_fdr	39	83	72	42	76	49	97	37	96	36
TGCAGTAGTCCTTCTA	alt_4820_fdr	31	40	39	24	31	31	29	22	35	18
CTAATGCTCCTGTTCT	alt_4820_fdr	150	167	197	154	173	130	190	157	204	162
TTAAATGATGCTGAGG	alt_4820_fdr	210	316	252	251	346	216	316	189	333	186
GCTCCATGTCTACAAT	alt_4820_fdr	29	37	25	20	39	23	30	21	51	21
TTATGCACGCTCGTTG	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CCTACAATTATATTTT	alt_4820_fdr	0	6	0	1	1	4	5	0	2	0
TACACTGCCTCTTTCG	alt_4820_fdr	10	32	12	9	10	15	16	6	27	5
ACAAGGTCGCTCTGTT	alt_4820_fdr	6	5	6	7	11	8	10	9	8	4
AGTGAGAGATCATGCG	alt_4820_fdr	28	16	21	13	28	12	20	12	21	17
AAGAGACATGGTATTC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTTAAGCGCAACCTCT	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTCTGAGTGTCTG	alt_4820_fdr	10	17	9	12	11	12	20	9	19	7
TAGGTGGTATATCGGC	alt_4820_fdr	3	6	2	1	4	2	3	1	6	7
CCCCCCGTATCAAGAT	alt_4820_fdr	9	28	17	9	19	9	28	7	11	13
GTTGACCCACCACCTG	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTTATTATCTCTC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTGAATAAATCC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTAGCAAGTCCGC	alt_4820_fdr	4	0	3	3	2	1	1	5	4	3
GTCAGGGGCATATTGG	alt_4820_fdr	3	5	1	1	4	1	8	2	3	6
CGCCCCGATCGTCCGT	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGACACAGGCTCC	alt_4820_fdr	2	9	4	3	11	2	18	10	23	2
ATTCGACTGGAGTGGG	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTTCATGTCGCCG	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
TTTGAAGGCGGGCCAA	alt_4820_fdr	45	72	46	46	73	40	72	28	73	32
AGACTCCCTTGGGATA	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
GAATTAGTTATCGTTT	alt_4820_fdr	30	35	18	11	26	16	29	16	25	12
TCTCTTCACACTGCTT	alt_4820_fdr	1	1	2	2	2	0	3	2	6	3
TCGTGAGATAGGCTCT	alt_4820_fdr	1	8	3	4	2	1	4	0	8	3
GTCTGCTGATGGACAT	alt_4820_fdr	47	63	55	43	57	42	65	42	77	40
ATTGTTCGCTTTCTTA	alt_4820_fdr	40	51	55	52	51	31	40	52	51	38
TAGTCTCACGTGTGTC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCCCTATCTTGTG	alt_4820_fdr	12	12	11	10	10	14	17	5	11	7
CTCGGTAGCAGTTTGC	alt_4820_fdr	38	47	41	12	54	30	41	22	61	28
TGGTGATCGAAATTCG	alt_4820_fdr	43	60	57	29	56	34	52	34	66	40
TAAAAGGGCGCAGATA	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CATACAGAATCCCGGC	alt_4820_fdr	23	35	18	34	31	22	25	19	34	14
CAGAGTTCCCTGTTGG	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTCCACGCTTCGGGGA	alt_4820_fdr	16	13	12	15	13	11	19	8	19	17
TTTGTTTGCGTCCTTT	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTGCATGTTTTCC	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTGCATCATTTTG	alt_4820_fdr	10	22	19	15	18	11	24	9	17	9
AAAAGACGCTACAAGA	alt_4820_fdr	22	20	26	17	31	19	23	26	28	15
ATAACGCACTCCCTCC	alt_4820_fdr	6	25	15	7	32	1	32	3	36	8
CGGTTTTCCGGATACC	alt_4820_fdr	11	39	21	18	31	21	34	18	22	17
GTTTGGATTGTGTGAC	alt_4820_fdr	42	73	60	45	70	47	69	42	85	31
CTCGAGTGTTTTTTAG	alt_4820_fdr	0	0	0	0	0	0	0	0	0	0
ACCGAAGCCTAGGTAT	alt_4820_fdr	13	25	16	13	35	12	29	6	18	11
TTTTTGTCCTTTTGCT	alt_5706_new	35	58	37	28	52	20	48	37	37	30
TCCACGGCTACTTTGC	alt_5706_new	18	48	20	21	30	20	36	11	49	13
CTTAAATAAGAATCCG	alt_5706_new	21	14	27	15	40	18	37	12	51	16
AATAGTAAATGCACCT	alt_5706_new	4	4	5	3	12	4	14	7	6	1
TACACTTTGAGTAATT	alt_5706_new	8	24	12	11	18	14	18	6	20	8
CGTGGACCTGCAAGGA	alt_5706_new	25	41	36	33	64	25	69	22	62	27
GCCAGCGTTCTGCCTT	alt_5706_new	0	0	1	0	2	1	1	0	2	0
TGCTCTTTTTGAGACT	alt_5706_new	0	0	1	0	0	0	0	0	0	0
CCTTCTCATGCGCAAA	alt_5706_new	1	3	3	2	2	1	2	8	2	3
GTCTCCCATGTACGTT	alt_5706_new	1	7	3	3	7	7	7	3	6	7
TACAGCTCCAAGTGTA	alt_5706_new	10	14	11	4	13	14	18	8	21	14
ACTTAAGTTGCACCGA	alt_5706_new	55	95	41	38	77	48	102	39	132	37
TCGATTCTGCACTGAG	alt_5706_new	0	0	0	0	0	0	0	0	0	0
AGGCCGTTCTTATTGC	alt_5706_new	36	61	26	34	57	30	53	32	66	23
CTGGAACCATCCGTGC	alt_5706_new	6	11	14	8	23	4	16	2	14	16
ACCGACCATAGTGCGC	alt_5706_new	3	14	3	5	14	5	16	11	11	7
TACGCTTCAAGGGCTC	alt_5706_new	60	96	77	53	73	50	111	32	122	56
TCAGAAAGTGCTTCCT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
CCTATCCAATTTGGGG	alt_5706_new	3	7	5	8	20	4	20	5	15	3
CTACTTTTACCGTTTC	alt_5706_new	13	21	13	5	17	8	17	2	18	10
GCAGATGGTTACCTGA	alt_5706_new	6	15	7	10	12	4	10	4	10	2
GATTTGAACTACATTT	alt_5706_new	11	17	13	6	26	10	22	13	22	5
AGTCACAACCTCCTAT	alt_5706_new	8	16	4	3	20	5	18	6	18	6
GCTGAGCTGCATCTCG	alt_5706_new	14	15	13	10	24	3	17	11	16	11
GACTCTTCATAGCCAG	alt_5706_new	6	13	11	8	12	9	7	9	18	4
CCGGTGTCTTGACATA	alt_5706_new	46	63	52	57	55	47	53	39	56	60
ACCAGCTATTCTTGGT	alt_5706_new	1	5	2	1	3	2	3	0	3	0
TTAGTATGTATTTCCC	alt_5706_new	5	12	7	10	13	5	18	8	9	9
AGTGGGCGTTTCCCAT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
CGTTTCAATGAAGCGA	alt_5706_new	8	7	7	4	16	6	16	8	18	2
AAAGGACTTGCAGTGT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
TTGCCGCATATTAGCT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
ACTGAGTTTATAGATT	alt_5706_new	22	47	29	37	53	21	41	32	57	27
AGTCCGAGGGTGATCT	alt_5706_new	8	16	10	15	14	8	18	13	15	12
AACGGTTGATGATATC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
ATTATGTTTTGTCTCA	alt_5706_new	12	23	13	11	20	4	14	9	15	9
CTAAGTGTTCTTAATT	alt_5706_new	0	17	9	6	15	7	19	8	13	2
TTAGATAATGCAACTG	alt_5706_new	5	13	4	5	17	6	13	2	14	5
GATAGGGCTGGACTCG	alt_5706_new	104	143	122	105	157	94	154	99	186	78
AATGGATGTAAACGGC	alt_5706_new	23	33	30	27	18	21	33	18	45	11
ACGGGCGGGGTAATAG	alt_5706_new	0	0	0	0	0	0	0	0	0	0
GTCACTCCTATACGGA	alt_5706_new	29	95	44	23	90	42	105	16	105	17
TGCCACTACAATTGCG	alt_5706_new	16	32	16	19	38	17	47	14	26	16
TCGGCACTTTTTCTGG	alt_5706_new	23	29	23	12	19	18	38	26	22	14
ATGGTTTACCCCCATT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
TTGTTTCATCAATGCG	alt_5706_new	28	55	24	20	45	20	46	37	29	19
CTCTACCGCCAGTTTC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
AACCCTTGTGTTGCTT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
AAAGGCGAACTTTCGG	alt_5706_new	58	75	52	46	74	45	67	47	77	34
TAAAGCGAACCAGAGG	alt_5706_new	1	3	1	3	1	4	1	1	4	1
AGTTGGGCGTAGGTCC	alt_5706_new	53	126	75	57	104	55	118	60	123	45
GGGATATCGTTTGATC	alt_5706_new	3	2	2	0	3	0	4	2	4	2
TCTTGATTTCTCCAAA	alt_5706_new	20	42	28	16	50	20	50	25	56	14
ATAGGCCACTTGATGC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
GTCCGGCTTTGTGAAC	alt_5706_new	17	19	18	4	24	5	16	7	30	15
TCATAAAGTCGTTCGC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
TTTAATGACTCCGCCG	alt_5706_new	18	29	31	22	32	17	33	13	33	20
ATCTACCGGGTGGGGT	alt_5706_new	9	21	14	10	25	10	21	8	30	17
CTCATCCTCGCTAGGG	alt_5706_new	23	36	29	30	42	21	36	18	42	21
AGCGCGCCGTATTTTT	alt_5706_new	55	86	59	58	91	47	93	54	91	39
AGGAAGTTTCTGAGGT	alt_5706_new	18	32	13	14	41	13	37	17	37	25
CGCTCAGGGGGTCCCG	alt_5706_new	5	2	1	2	2	0	2	2	3	1
CATTAAATCAGGAGTC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
AGCGCTGACGTAAAGA	alt_5706_new	2	14	3	4	5	5	7	0	13	2
GCGAAGGCTGCAGATA	alt_5706_new	20	53	23	13	38	16	45	21	48	15
AGTCGTAGAGAATGTC	alt_5706_new	46	48	43	46	60	49	52	27	86	27
TGTTGCCCACGCCGTG	alt_5706_new	14	29	6	13	30	11	26	9	22	12
ATTTGTAGCTTGAGTT	alt_5706_new	18	34	21	14	26	12	34	20	33	12
TAATGGTATCTATCGC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
GGACCGTACTCGTTCG	alt_5706_new	31	51	44	37	73	32	61	36	79	30
CATCGAATTCGCAGAG	alt_5706_new	0	0	0	0	0	0	0	0	0	0
GCGGTCCTAGCGATGA	alt_5706_new	5	11	8	7	11	11	20	4	12	5
CCCTTGTATCGATGAT	alt_5706_new	117	201	161	124	216	101	242	125	232	116
TAATTGTACCAGTTCT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
CGCGTGTGGACCAAAG	alt_5706_new	55	75	52	63	87	46	95	40	93	47
AAGTAATGTCTGACGA	alt_5706_new	13	22	13	15	27	11	17	11	21	11
CTCATTTTATCTGCCG	alt_5706_new	14	18	14	14	28	15	31	7	30	9
GAATCCGCCCATCACG	alt_5706_new	25	32	24	15	38	19	40	18	39	17
ATTAAAACTACTAGGC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
AAAATTCTACCTATCG	alt_5706_new	5	3	5	2	9	4	14	1	11	1
TTCGGATGAACTTGGT	alt_5706_new	4	10	9	7	20	7	11	4	14	6
CCATCTTGTTATCTGC	alt_5706_new	39	90	65	50	97	42	79	28	107	32
GTCTCCCTGATCAGGA	alt_5706_new	13	77	28	20	84	23	86	16	88	28
CTGCAATTTTAAGCGG	alt_5706_new	43	66	40	45	70	30	71	40	89	50
CTCATTGGCAGCGCAG	alt_5706_new	0	0	0	0	0	0	0	0	0	0
CACTCGGGACTAATTA	alt_5706_new	25	52	28	25	57	16	48	27	48	16
GGATTCATGGTATCCT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
ACGAAGTGTGACGTTT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
GCCATTTCCGCTTCGA	alt_5706_new	10	6	2	2	6	3	2	4	4	3
AGTTTGTTGGTTATCT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
CTAATTCTTAACGTAC	alt_5706_new	7	21	12	5	13	7	21	6	25	9
CGGATTAAAAGCCGCT	alt_5706_new	0	0	0	0	0	0	0	0	0	0
GCGTCTTACTCCAGAT	alt_5706_new	41	108	47	42	80	47	97	30	120	36
AGTTCTCTACCGACGG	alt_5706_new	80	161	85	82	148	84	167	71	153	85
GTCCTATGGATCTCTT	alt_5706_new	1	2	2	3	1	1	7	3	6	0
CTCATCACTTGCATCT	alt_5706_new	20	28	16	16	42	19	23	14	27	10
AGTTCCTAACTCGGAT	alt_5706_new	17	26	17	15	40	21	24	16	40	20
GCATGTTTTTAACCCC	alt_5706_new	0	0	0	0	0	0	0	0	0	0
AGGGTCTCGACACGGG	alt_5706_new	34	43	39	34	54	34	63	26	56	25
TGCAGCGTTCGTATAG	ref_5716_new	82	165	86	95	141	87	158	74	155	86
CTGCCTCCGTAATACC	ref_5716_new	10	30	34	20	27	27	17	14	31	13
TATATGCATCCTTGGT	ref_5716_new	3	3	3	1	4	3	3	0	5	3
AGTGTGGGTAGTTAAA	ref_5716_new	0	0	0	0	0	0	0	0	0	0
CCGTGGCCCATGTTAC	ref_5716_new	0	0	0	0	0	0	0	0	0	0
AGTAACCCCGTGGCTA	ref_5716_new	21	51	43	26	37	19	47	23	56	27
TGCACTCTATCTAACT	alt_5716_new	2	3	6	5	5	0	4	0	3	2
TAGTGGTCTTCTTATA	ref_5716_new	50	61	69	43	76	46	65	41	81	54
CTCAAAATCACGCCGT	ref_5716_new	0	0	0	0	0	0	0	0	0	0
CCGTCCTCAGATCTAC	ref_5716_new	8	15	7	7	8	6	6	8	7	10
TCCTTCTTTTTCTGCA	ref_5716_new	0	0	0	0	0	0	0	0	0	0
ATTTGTTAAGTGAGTT	ref_5716_new	10	30	16	21	30	11	46	16	20	17
GCGGTATCATTTGTAC	ref_5716_new	15	34	14	11	23	11	33	10	35	10
GCAGACATCTAAGGCA	ref_5716_new	32	35	36	42	81	37	83	34	80	32
GGCTTGTATAATGGGA	ref_5716_new	16	14	21	14	12	8	20	6	15	1
AATAGGTATTCTCAAT	ref_5716_new	10	5	6	4	13	3	9	5	9	2
TAGATTCCTCTTGTGG	ref_5716_new	19	27	31	18	23	24	32	21	38	30
GATTTCCTTGGTTCCG	ref_5716_new	13	12	21	10	26	8	19	16	18	4
GTCCTGTACATCAGTT	ref_5716_new	23	33	41	25	48	23	36	18	62	12
CCCTCTTTTTCACGGT	ref_5716_new	4	8	4	3	9	3	17	3	18	1
TCACACATTCGTGTCG	ref_5716_new	7	27	18	9	27	19	24	12	18	8
AGACTACTTTTCGGAC	ref_5716_new	0	0	0	0	0	0	0	0	0	0
TTCTCACACCGTTATA	ref_5716_new	23	45	34	23	51	20	36	10	60	30
TCTTGTCGAACCATGT	alt_5716_new	20	38	28	24	26	13	50	13	39	24
GTTATAGATCTGCCCC	ref_5716_new	23	17	13	11	27	20	29	17	34	17
CACGGTTTAATCTTGT	ref_5716_new	6	17	6	1	6	3	12	4	11	0
ATCACGGCCAGAAATC	alt_5716_new	168	189	180	155	223	149	204	139	194	131
GGGTGTGATGTTGTTT	ref_5716_new	8	27	14	10	9	12	16	8	13	7
GGCTACATGTTACACT	ref_5716_new	8	12	16	9	17	9	6	13	8	6
TCGTCTAGTGGCGTTC	alt_5716_new	84	117	95	83	128	86	137	65	164	85
CGATGTTCATCCTCCC	ref_5716_new	0	0	0	0	0	0	0	0	0	0
CTCGAGGACGCCACCG	alt_5716_new	31	23	37	30	34	18	37	33	46	15
CAGGGCAATATCCTAT	ref_5716_new	12	24	22	23	15	15	23	23	30	19
CAATTTTTGCCTTGAC	ref_5716_new	6	18	12	5	16	8	18	6	14	4
CCAAGTAATCAAGTGG	ref_5716_new	94	168	115	107	122	115	164	97	172	102
GTGTGAATGGTTAGTG	ref_5716_new	17	51	37	13	40	22	35	13	44	13
GCGTTATTCTTAGCGG	ref_5716_new	0	0	0	0	0	0	0	0	0	0
TTAAGCGAGCTCTACG	ref_5716_new	0	0	0	0	0	0	0	0	0	0
TAGAGCGAATGAAATT	ref_5716_new	4	11	10	4	21	6	13	5	20	13
AACGAGGTGTTTCATA	ref_5716_new	0	0	0	0	0	0	0	0	0	0
TATTAATAGGCTATAT	ref_5922_new	46	52	58	53	62	47	37	53	65	48
GCTCGTAGGGTTTGCT	ref_5922_new	0	0	0	0	0	0	0	0	0	0
TGCTGTTGGCTCCCAA	ref_5922_new	0	0	0	0	0	0	0	0	0	0
ATTAACTGCTCAAAGT	ref_5922_new	123	138	198	158	172	161	151	135	183	139
AGCCGTAATCTTAAAC	ref_5922_new	19	22	22	22	10	20	21	16	31	16
CCCGAGTGGCACTTTG	ref_5922_new	9	22	9	8	24	13	21	8	28	15
ATCTCGACACGCCGCG	ref_5922_new	24	32	27	30	25	30	29	23	26	20
GGATTTGTTCATAGTT	ref_5922_new	135	131	132	110	142	129	150	108	127	81
TAACTGGACAAAAAGA	ref_5922_new	7	9	6	5	6	6	8	6	6	5
TCTTCTTGCACCGGAC	ref_5922_new	2	4	4	4	3	6	4	3	3	2
GGATAGGGGCAGACAA	ref_5922_new	16	18	18	15	16	26	26	26	12	16
TGATTGCTCACAGCGT	ref_5922_new	51	56	40	36	47	46	42	56	55	46
TACGAGATTCTACCCA	ref_5922_new	4	3	4	6	4	7	1	8	7	4
AAGACGGCGTAACGCG	ref_5922_new	8	13	12	9	13	9	7	7	7	15
GCCGCGAGCCCAAGCT	ref_5922_new	62	85	78	64	73	61	83	69	105	61
TGATTCGTCTAAGAAA	ref_5922_new	21	15	17	18	16	8	37	14	14	16
TCGAGCCGGTTGCCCC	ref_5922_new	0	0	0	0	0	0	0	0	0	0
GTCAGGTGTGTTACTG	ref_5922_new	25	30	25	29	35	20	37	36	35	23
GCGCTGTGCTGAGTGA	ref_5922_new	44	44	53	42	29	40	46	44	54	41
TCTATACATGGGTTTG	ref_5922_new	0	0	0	0	0	0	0	0	0	0
ACACGTTCCTATTTCC	ref_5922_new	16	8	9	7	27	8	16	8	17	10
TTCGGGCTCTAAGTCG	ref_5922_new	0	0	0	0	0	0	0	0	0	0
ATTAATTTCAGCGTTA	ref_5922_new	15	17	22	13	14	24	12	10	20	9
AACCCCATGGCTAAGT	ref_5922_new	4	7	11	3	8	13	10	4	9	4
TTTGGCTCTGTAATCA	ref_5922_new	0	0	0	0	0	0	0	0	0	0
GTTATCTTTTGGAGGT	ref_5922_new	0	0	0	0	0	0	0	0	0	0
TGCACGTTACGTTCGG	ref_5922_new	2	6	4	2	3	2	8	3	6	0
CCTTTTATGAGGATTC	ref_5922_new	50	54	49	49	51	42	46	58	44	47
CGTCAAGAAGTTCGAG	ref_5922_new	53	59	72	76	65	67	44	43	74	59
GAGTAGTGGTTGGCTT	ref_5922_new	149	175	171	128	135	127	175	161	169	104
CACTTTTGTACAGTGA	ref_5922_new	73	71	52	56	70	56	78	75	65	45
TGAGGCTATCACAGCA	ref_5922_new	33	47	48	44	49	34	58	48	42	28
CACCCTGTGAGCGTGA	ref_5922_new	11	13	14	13	7	8	10	17	10	9
AGGACGATTATTAGCT	ref_5922_new	151	134	172	143	135	146	146	120	143	111
AGTAAACCTAATTTTT	ref_5922_new	0	0	0	0	0	0	0	0	0	0
TCTTATTGGTGCTATA	ref_5922_new	0	0	0	0	0	0	0	0	0	0
CGTCCTTTTGCACTGA	ref_5922_new	15	16	15	11	11	22	18	18	13	20
TGTAAACGTGTTTGTA	ref_5922_new	0	0	0	0	0	0	0	0	0	0
GAGCTTGTCAATCGAC	ref_5922_new	2	4	10	1	3	2	7	4	4	5
GTGTAGCTGCCGCGCC	ref_5922_new	32	27	39	45	40	26	37	38	49	30
AGAACCCGTAAAATTT	ref_5922_new	47	67	60	71	77	46	89	50	83	47
TTAGTAATCGTCTACC	ref_5922_new	35	29	33	33	23	33	31	17	23	32
TCGGTTTGTCCGCGTT	ref_5922_new	0	0	0	0	0	0	0	0	0	0
TGCCACATTCCGACTT	ref_5922_new	9	11	18	7	19	12	12	15	18	15
GAGTCACTCACGGACG	ref_5922_new	0	0	0	0	0	0	0	0	0	0
TGGAAACTTGATGTGA	ref_5922_new	25	26	46	24	29	27	40	25	26	23
CATCCCAGGGGTATAT	ref_5922_new	25	32	31	35	46	29	36	20	49	20
TGTTGTATTGTTTTGC	ref_5922_new	34	53	52	57	49	45	46	48	43	54
TCGAGCCGGTTGACCC	ref_5922_new	49	66	73	42	65	45	66	63	72	50
TCGTCTACTCGTGAAT	ref_5922_new	15	34	27	20	40	32	52	27	40	19
CTGTACAGTTGCAATT	ref_5922_new	0	0	0	0	0	0	0	0	0	0
TCACGTTTATATCACA	ref_5922_new	24	19	20	23	22	24	25	27	20	8
TCGTTAGTGCTTGTTA	ref_5922_new	54	70	57	50	71	43	66	45	88	42
CTTAGCGTTCGGCGCT	ref_5922_new	82	127	94	82	114	94	146	84	126	76
CTAGAAGTTCTTCCGA	ref_5922_new	0	0	0	0	0	0	0	0	0	0
TGGCTACAGTTTCTGT	ref_5922_new	15	18	15	21	20	12	22	13	34	20
GACGTGACAGTTCCGG	ref_5922_new	30	16	10	26	25	23	30	22	22	10
TTGTCAACCCCGTCGA	ref_5922_new	2	28	4	6	27	2	33	2	31	2
TCAATATACGTTTTTT	ref_5922_new	54	51	50	47	62	53	55	49	66	43
GCCTATTAAGTCATCC	ref_5922_new	17	19	12	7	23	9	16	4	23	7
GTATCTTTATCTCGTG	ref_5922_new	6	14	6	2	5	13	6	7	7	1
TCGTCAAGACTCGCTG	ref_5922_new	0	0	0	1	0	0	0	0	1	0
ATTGAGTCTTCGCCTG	ref_5922_new	8	9	4	1	12	9	13	4	17	6
AGTTACGACTTCTTAT	ref_5922_new	59	39	68	58	49	49	66	51	46	46
ACATGCTCCTTGTCAC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCTGATCAAAGA	alt_862_reverse	37	27	42	42	25	29	39	27	18	30
CTTTTAGATCATTGTT	alt_862_reverse	19	26	19	31	20	21	20	31	31	18
CACGTCTACCCTACTC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TATCCGTATCGCGATG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GAACTACGGTGAATCG	alt_862_reverse	65	55	81	79	65	57	46	37	58	60
GGATGAGGTGGTCACC	alt_862_reverse	7	7	8	12	16	5	6	15	16	12
CCGTCTGGATATCAGT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCTCGCGGTGTA	alt_862_reverse	31	23	32	22	34	35	31	37	34	28
ACTTGGTATCGCTCTG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGCTAGCCAGTCT	alt_862_reverse	44	47	63	57	35	42	27	48	41	48
CTGTCGGTTATAAGGA	alt_862_reverse	30	16	35	29	16	12	18	20	23	24
TTATGGCGTGATAAGC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCTGGGAGCGCAC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GAAATAAAACAAAGAG	alt_862_reverse	6	1	7	7	2	3	2	4	4	5
AGGGTACCCCTGTTCG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CAGGGCAACCAATCGC	alt_862_reverse	0	2	1	0	0	0	2	1	0	0
GCTGAAGGGATCCTAA	alt_862_reverse	206	157	241	213	168	190	183	193	172	180
ATTTGCATTCGACGAT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCATCTCCTTCATACA	alt_862_reverse	15	9	14	12	15	15	14	11	8	14
AATTCCGGGGGCTCCT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GCGCATGCTTTAACTT	alt_862_reverse	34	36	36	37	33	47	33	38	41	44
ACTTCTGGTGCGGTAA	alt_862_reverse	21	21	53	35	16	26	41	30	22	28
ATGTGCTGTCGGGATG	alt_862_reverse	43	55	56	50	51	53	58	54	72	44
CTGGGCAAAAATCAAG	alt_862_reverse	6	9	3	7	2	5	1	4	5	3
TTTCTTGCATATTCGT	alt_862_reverse	13	8	8	7	9	9	8	8	7	11
AGAGTCCGCTAGATTA	alt_862_reverse	34	20	45	31	25	25	21	27	26	23
TGCCCGGCATATAATG	alt_862_reverse	28	17	44	41	33	25	37	18	16	23
TTTTTTTTTTGCTGCT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GCCAACCTGCTTGGAT	alt_862_reverse	114	127	158	111	143	102	116	115	126	118
GTATGTAGCGCGCAAA	alt_862_reverse	7	10	13	8	10	8	9	4	17	4
GCTGTAATGCTAGTCT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCAGATCACTGGAATC	alt_862_reverse	84	53	96	73	73	71	68	72	82	60
TGATAATACGAAGACC	alt_862_reverse	95	63	102	114	85	78	63	97	109	102
CCGATCTCCAGCAAGC	alt_862_reverse	1	1	4	0	2	0	2	0	2	1
TCGAGTAGACCTGTAT	alt_862_reverse	22	17	26	25	23	30	19	21	26	29
TGTGTAGTCAGCTAGA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CATGACCTCTAAGGCC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGGTTGTTTTGCT	alt_862_reverse	31	11	24	19	28	15	17	15	29	23
TATGACAACTCGGAAT	alt_862_reverse	47	43	65	57	65	48	43	33	38	38
TTTGGGGTCTAGTGAG	alt_862_reverse	24	9	19	15	14	15	15	15	16	11
CCATTTCTTCGGTGGC	alt_862_reverse	51	45	80	55	37	51	49	53	51	45
TCCCGCTGTTACTTCA	alt_862_reverse	108	155	155	125	158	103	161	103	170	118
TAGAATCCCTCGTTCT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GTACACGCATTCACGT	alt_862_reverse	22	13	16	21	13	29	10	12	17	19
CCATCCGGATCGCTCG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTCGATGTCGCTA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTTGTTGAGCACC	alt_862_reverse	90	122	142	100	117	86	122	118	117	112
CCCAGTTCGCGTAGTT	alt_862_reverse	38	42	35	40	32	35	35	31	56	41
TTCATCGGGCAATTCG	alt_862_reverse	29	34	46	42	23	22	26	24	26	45
GTATCTCCTACTTAAC	alt_862_reverse	41	35	46	53	53	46	44	47	37	51
GTGTATAAGTGAGTGG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGCTAGCGAACTT	alt_862_reverse	43	42	68	56	45	41	46	36	43	43
CGTTACCGCTACGATG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GGTCAACTTCGGCCGG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTGAAGCTGCACC	alt_862_reverse	77	66	92	79	71	64	58	79	70	92
TTGGACAGGCTCTCCT	alt_862_reverse	37	28	32	31	32	36	36	30	26	26
TTATGCACGTCCCTAT	alt_862_reverse	37	25	54	31	29	39	24	25	30	42
ACGCTGAATCCAGTAG	alt_862_reverse	51	39	55	32	39	40	36	34	47	44
TAAGTCGTTTGGTTGC	alt_862_reverse	206	170	233	214	193	198	187	177	189	173
CAGTGTATCTTTACAC	alt_862_reverse	45	49	76	57	51	47	47	42	54	42
ATATTCTTAATGTCAT	alt_862_reverse	65	58	93	65	71	82	55	72	70	70
GGCCTCGACTCATGTT	alt_862_reverse	16	15	20	18	11	16	12	14	7	11
TTCGAGCTACAAAATA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TAACCATTTTGGCGGT	alt_862_reverse	122	91	144	121	104	128	86	120	95	93
CTTGTGACATTTTCAA	alt_862_reverse	13	5	18	19	8	10	21	13	8	3
ATTATTTAGTCTCGCC	alt_862_reverse	11	14	21	13	9	10	12	15	23	16
TTGGAAGGATTATTCG	alt_862_reverse	10	6	13	7	5	9	8	4	6	10
AACGCATGTCCACTCC	alt_862_reverse	62	57	82	60	76	66	67	54	82	61
AGCAACGGCCTGGATG	alt_862_reverse	32	32	27	17	19	28	24	30	38	31
CCCCGAATCGGGCTGC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAAGTGTACTCGT	alt_862_reverse	5	5	10	14	21	18	9	9	17	11
AGAGCCTGAGCTGGCA	alt_862_reverse	41	39	69	33	38	46	42	43	36	39
TTATGGCCGGTTCCTT	alt_862_reverse	57	41	58	58	38	58	48	50	41	54
TGGAATCTTCTTGGTG	alt_862_reverse	95	92	128	86	71	92	84	90	81	98
CGGACTAAGGCGCGTT	alt_862_reverse	4	1	3	3	0	3	3	0	1	3
GTTTCGTCGGCTGATT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTAACTATTCGC	alt_862_reverse	25	15	27	18	28	25	16	26	28	17
GTAAACAGGGCTCTTT	alt_862_reverse	87	47	95	101	67	64	54	66	60	87
CCGAGTTCAGTATCTA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTGCCAACTCTTT	alt_862_reverse	58	47	58	56	59	62	73	49	62	62
CTCGGCCCAATGCCCT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTACGATATCGAT	alt_862_reverse	7	6	4	12	7	4	7	10	4	2
CGTGTTATTCGTGCAC	alt_862_reverse	76	66	67	53	72	67	57	51	67	63
GCCGGCTGATCGGGTG	alt_862_reverse	42	45	80	67	54	51	47	75	62	54
TTTTTTTTGCTGCTTC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GCTCATTAGCCCACAC	alt_862_reverse	7	10	17	10	5	10	8	8	12	12
TCTATCATATCCGTAA	alt_862_reverse	6	6	18	12	11	8	19	15	14	10
CTGCCGTTTTTTAAAT	alt_862_reverse	21	31	20	25	40	13	19	14	46	6
TTTTAGGTAACCTTAC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
ACAACGTAGCCTTCCG	alt_862_reverse	23	29	28	30	35	30	40	28	31	26
CACAAAGCCGTTGCTA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TGGCATTGTTCGGAAG	alt_862_reverse	31	25	27	24	31	31	26	22	23	25
CCTTACCTGTCACTGT	alt_862_reverse	10	60	15	21	51	18	63	9	63	14
GTGGATCGGCATGTTT	alt_862_reverse	162	111	194	146	123	166	176	129	155	117
GAAACGGCCGATTGGT	alt_862_reverse	50	53	55	46	52	48	44	52	46	46
GGAGTACAGGTCTTTT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCCCTGATCAGGG	alt_862_reverse	88	69	98	58	76	71	83	72	86	67
GGCGTTGTAGGTCCCA	alt_862_reverse	52	34	30	29	19	30	30	35	27	28
CGTTCTTTGGGCATGA	alt_862_reverse	15	19	22	25	12	18	16	22	25	18
TGCGCCCGACTCGCTC	alt_862_reverse	84	65	75	68	85	49	81	52	75	57
TGTTCACGGTACAGTG	alt_862_reverse	0	1	0	0	3	3	2	2	0	1
GCCCCACCCATGATTA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTTTTTTTTCTGC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAGTAGCCTTTTC	alt_862_reverse	76	72	93	81	84	87	90	85	69	81
GCAGCGTGGCGGCTCC	alt_862_reverse	19	18	36	24	18	23	11	10	15	15
CCTTCGCCGCATGAGA	alt_862_reverse	5	7	13	4	19	8	12	6	7	2
GATTCCCCAAGGGCAC	alt_862_reverse	25	28	57	36	22	32	24	41	30	28
GCTTCTGGCCAGCCGA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGGAGCAGCGGAA	alt_862_reverse	5	6	7	2	5	3	1	7	4	4
TTCGCTACTCAGCTAC	alt_862_reverse	8	7	10	12	8	4	4	12	12	11
ATAAAATGGTGATTTA	alt_862_reverse	48	33	62	45	27	38	40	36	48	39
GTTCATGAGGTCTCAT	alt_862_reverse	0	2	3	1	1	2	0	0	2	3
TGTGGGTTCGCGATTC	alt_862_reverse	51	58	84	64	68	66	52	53	51	81
AAGCTTAAGACATTCC	alt_862_reverse	27	7	15	9	8	11	17	12	6	12
AATGGTGGTTGAAAAC	alt_862_reverse	87	72	100	79	77	91	60	81	84	65
AATTTAGCCGGTCAAT	alt_862_reverse	67	56	73	57	86	50	47	45	59	50
TATGTTTATGTCTCTG	alt_862_reverse	162	93	179	145	115	154	113	136	109	160
CCAATCTGCCACTGCT	alt_862_reverse	43	44	57	45	62	42	48	33	43	39
CTAAATGTGGAATAGT	alt_862_reverse	84	78	120	106	76	112	85	81	82	74
CATGATATCTTTCAGC	alt_862_reverse	46	41	56	66	39	40	53	35	46	51
GAGTTTCTTTCTTGCG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TAACGTAATGATGTCT	alt_862_reverse	202	170	220	167	161	152	177	180	156	193
GTACGCGGGACAGAGG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
AATCTGTTCATCCGTC	alt_862_reverse	20	20	24	21	22	13	18	19	21	19
ATCCGCAGATAGCTCA	alt_862_reverse	30	34	60	41	42	35	35	36	28	28
ATTCTAATGACCGCAA	alt_862_reverse	78	65	86	60	54	79	72	87	60	76
TAATTTCACGATGCCC	alt_862_reverse	10	3	11	4	6	12	7	9	12	8
GTCGTCAGATTACAGA	alt_862_reverse	10	7	7	7	6	8	9	8	8	8
AGCCCTTGTTTTACTC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACGGTACATGAG	alt_862_reverse	4	9	16	7	9	10	6	9	17	5
CTTCGGCTTTCCACTT	alt_862_reverse	4	20	13	5	16	7	9	14	10	6
TTAGACGGGCAGTATG	alt_862_reverse	10	16	15	10	13	6	9	7	9	6
TAAATGTATGTAGTAT	alt_862_reverse	86	72	95	70	94	90	80	87	90	61
CGTATGCATTATCACG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCACCCTTTACATCGG	alt_862_reverse	126	150	145	136	146	173	118	130	121	93
TCAATGACTACGCGCA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CTAAATTGCGGTTTAC	alt_862_reverse	8	5	4	13	5	8	8	6	8	8
GGTCCGACTGACGTAT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CTGATCGAGGTGATGT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTCCGCGAACTAC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTATTGCTATTAT	alt_862_reverse	18	19	22	39	9	25	29	24	34	29
GTAACCTTCTCAGATT	alt_862_reverse	86	57	97	79	65	64	84	58	80	71
GTTAACGGGCCCGGTC	alt_862_reverse	19	14	27	31	9	16	16	20	20	17
GTTGTTTTCTGCGGTT	alt_862_reverse	8	7	16	11	5	8	6	9	6	9
GGTACCACCTGCACTA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCCTTTCGACCCG	alt_862_reverse	8	12	13	10	17	6	7	7	4	3
TCCCTTAGCCCCATAT	alt_862_reverse	452	454	564	449	508	416	469	449	479	396
TGCTAAGCTGTGCCTT	alt_862_reverse	0	0	0	1	0	0	0	0	0	0
CAGTCGTGCGCTCCTA	alt_862_reverse	69	68	75	106	58	72	85	90	69	76
CCATCCAATGATACTT	alt_862_reverse	14	16	17	25	22	29	12	23	23	20
TGCGTGGTATACTATG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
ACTCCGCCGTCCACTC	alt_862_reverse	12	18	20	17	15	14	18	13	14	12
GTAGTCTGCTTGGCAA	alt_862_reverse	6	20	10	8	11	10	8	16	7	4
CCCCCTTTCACCCAGT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CGACGCTCTGGTGTGC	alt_862_reverse	8	23	17	8	22	18	35	7	19	20
AAATTCTAGTGCGAAT	alt_862_reverse	63	60	96	55	58	51	58	53	52	39
GTAGGGCTAGGGGATT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
ATCATTTCCCCGCTAA	alt_862_reverse	66	79	92	67	80	58	77	59	82	59
GCCGTCCCGTTTGGGG	alt_862_reverse	24	28	34	23	34	28	33	34	36	22
GATTCAGACCATCAGT	alt_862_reverse	51	57	47	53	30	36	37	39	41	44
GTTAGAGCTGATCGCT	alt_862_reverse	172	161	183	171	160	151	173	141	201	147
CTTAGCTTATGCCGCA	alt_862_reverse	104	73	129	86	78	113	100	111	89	92
TCGTTGTTCTGGAACA	alt_862_reverse	41	41	51	35	43	41	44	50	56	30
TAAGCAATTAACCTAG	alt_862_reverse	94	55	87	87	33	89	80	71	67	57
TTGTCCGGTGTCCTTA	alt_862_reverse	29	28	37	42	27	24	24	26	35	24
ATTATCTTAGTTACCC	alt_862_reverse	61	52	94	58	65	54	55	62	56	60
TAAACTACGATAATCA	alt_862_reverse	36	33	43	34	25	27	23	41	31	31
CGGTTACTGGTCGGAA	alt_862_reverse	1	5	6	7	2	8	3	7	6	5
GTAACACTGGTTTTAA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CATGGGTGAGTCTTGT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGGTGCAGCCGCC	alt_862_reverse	12	25	20	14	13	17	25	21	23	19
ATTAGGAGCAATCCTG	alt_862_reverse	7	13	19	7	2	3	7	12	9	3
TCTCGTACTCTCTGTT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCTTTTACTTATG	alt_862_reverse	30	26	37	33	45	21	32	20	42	28
TCGGGATCCCGCGTCT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCTCAGGTTTTGCTGC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CTCAATTTCGAAGGGT	alt_862_reverse	30	20	36	32	29	36	27	22	34	28
ACTCTGAATACTTGTT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TCATGGTATGATGCAA	alt_862_reverse	31	32	40	41	19	36	31	46	43	36
CAAAGAGATTGTTTAG	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
ATCAAGTATTATCGAT	alt_862_reverse	1	2	6	0	1	2	0	3	4	4
CAGAATGCAAAACGTT	alt_862_reverse	31	58	38	35	38	39	47	30	44	24
GCCCCGGTGTTGCGTC	alt_862_reverse	6	1	5	0	7	1	5	2	1	0
CTCTCGTTGAAGATTC	alt_862_reverse	50	36	62	50	48	37	38	47	44	64
TTGGTCGGCGGGAGGT	alt_862_reverse	9	6	12	5	10	13	11	15	5	5
TTTTTTTTTGCTGCTT	alt_862_reverse	128	107	121	132	77	93	97	118	91	90
TGTTACGTCTATTCCA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTAGATTCTATTC	alt_862_reverse	12	20	10	9	15	5	18	11	19	9
AAGTTTGTGACCATGC	alt_862_reverse	49	51	41	40	39	40	46	41	36	39
GACCCATGAATTTGTC	alt_862_reverse	32	28	49	47	30	47	23	28	23	27
CGCAGTTTGCTTTGTG	alt_862_reverse	1	2	2	2	1	1	0	6	3	2
ACTGCTTCCCCTAAAG	alt_862_reverse	20	68	20	15	70	19	77	13	60	13
TGTCCGCGACCAGTTT	alt_862_reverse	44	33	56	47	48	37	45	47	53	44
CCTCCAACGTCTCGCG	alt_862_reverse	73	63	95	77	82	81	65	64	55	78
GCAATGCACCAATAGA	alt_862_reverse	32	30	36	43	40	35	25	31	35	21
CACGGACCATACGTAT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
TGCTAAGCCGCCGAAA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCGTTGGGTTCCT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGTTCCCATAGGT	alt_862_reverse	37	28	39	37	32	25	33	28	39	52
TCGGTAAGAAAGTCTT	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CACTCCCGGGACTGTT	alt_862_reverse	11	9	10	14	15	14	12	5	9	9
GTCTTGCATTCAAGAA	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGTGTAGCCAGCT	alt_862_reverse	29	29	30	36	39	25	29	23	22	35
TCACAACCCAAGGGCC	alt_862_reverse	81	61	86	83	83	86	68	79	85	51
CTCCTTTGGCGCTATT	alt_862_reverse	5	9	12	6	7	6	16	11	8	6
TTATCTGGTAAATCGC	alt_862_reverse	8	6	14	11	8	10	4	16	11	12
CAGGAGGTCTGGTGTG	alt_862_reverse	7	9	10	5	12	7	10	8	12	3
TCGTGATCCGGCCCAA	alt_862_reverse	23	18	25	22	12	36	19	30	19	23
CAAGGCCGCCTTTATT	alt_862_reverse	3	5	8	1	5	4	10	6	4	1
AGCATAGGGTTTCATT	alt_862_reverse	10	5	19	17	9	12	9	8	8	10
AGGTAACTTCTCCATC	alt_862_reverse	12	21	28	12	21	26	19	25	28	21
CATTTAATTCTGTTTT	alt_862_reverse	47	39	74	66	37	68	42	64	63	56
TTGGCCTGTCGCTCGC	alt_862_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTCAGGTACGGGT	alt_862_reverse	43	71	63	49	56	67	111	42	80	37
ATGAGAAGTCGGTCCT	alt_862_reverse	143	124	175	136	124	133	115	149	142	162
TGGTATGTGTAAGATT	alt_862_reverse	9	10	16	11	12	15	11	11	5	7
ACGCTGATGTCGCATT	ref_3970_fdr	36	21	39	39	21	33	24	26	25	21
GATTCAGCGTTTTCGT	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
ACACCGTCGCACTCCG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTATGTTAGCGGA	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCTGTGACGCGCA	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
AAGAATTGGTTCGTAA	ref_3970_fdr	64	49	90	58	44	60	56	72	57	50
CTGCTCAAATGACGAT	ref_3970_fdr	77	89	100	89	85	79	111	88	79	86
ATCCTGAAGGCCTGTG	ref_3970_fdr	5	5	17	5	9	8	7	6	8	9
CCGGGCCCGGCGGCTA	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCATCCAGGGCTG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCGGATCCGAGAC	ref_3970_fdr	51	60	68	59	78	44	63	56	61	42
CAATGAACGGGATCCT	ref_3970_fdr	57	41	61	42	35	48	36	43	40	43
TCTTTACGCTCCTCGC	ref_3970_fdr	2	1	0	4	0	1	3	1	1	3
CGCGATATCGTTGAGA	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGTGTAACTTCAT	ref_3970_fdr	50	38	53	50	35	58	42	51	33	43
CAATCTGTTACGTAGA	ref_3970_fdr	16	10	13	6	7	8	9	8	7	6
ACTAAGTCTACGCACC	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGGTTGTGCGCT	ref_3970_fdr	7	8	12	5	7	9	8	3	5	9
ATTATAAAATGATTGT	ref_3970_fdr	19	11	31	18	14	22	17	18	25	19
ATCCTCCTTATCAGTC	ref_3970_fdr	19	29	29	15	15	28	15	14	13	12
CTTTCCTTTTTCTTTT	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTACCTTAACGCC	ref_3970_fdr	67	67	83	64	83	73	65	65	60	63
TGAGAAAGCCCTATTT	ref_3970_fdr	38	23	54	39	35	47	34	32	35	34
ATCGTATAGGTTCGTT	ref_3970_fdr	75	81	117	102	62	93	64	87	94	78
CGGAGTATATTTATTC	ref_3970_fdr	130	92	120	133	102	126	104	108	102	113
AACGACTCCGATATGG	ref_3970_fdr	9	2	5	4	4	4	6	4	10	3
ATGTTTTATTCGCGCA	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
CTTACTTCAGTTTTGG	ref_3970_fdr	1	3	1	2	0	2	4	0	2	1
CATCTACCGGTATTAG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
TTACGCATTTGAAGGG	ref_3970_fdr	3	7	4	3	6	3	6	4	3	4
TAAACCATTGCGCCCA	ref_3970_fdr	181	160	229	205	145	177	147	155	131	165
TAGCCAACAGGGTGCT	ref_3970_fdr	34	29	53	45	27	41	39	33	32	43
CATCGATATACTTCAC	ref_3970_fdr	22	18	20	18	13	4	15	17	17	9
CCGACGATACGTGCCT	ref_3970_fdr	17	7	13	3	9	8	13	14	11	3
CCTACTGAGCATATAA	ref_3970_fdr	42	31	47	39	34	45	35	32	43	38
GAAGGATACCGACAGT	ref_3970_fdr	10	9	8	8	10	11	2	13	14	6
AAGATTAGGTTATTTT	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
ATAAAAGACCCGATTC	ref_3970_fdr	21	17	22	24	17	18	10	23	12	16
AATCGACTAAGAAGCA	ref_3970_fdr	85	62	107	76	63	94	76	69	55	69
GATCGCTAAGTTCAAC	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTTGAGTCGGACT	ref_3970_fdr	26	29	22	23	27	20	24	35	30	17
GGGTCGTGGTGCGCTG	ref_3970_fdr	47	24	39	34	32	30	30	36	35	30
CCTGACACTCTGGGGG	ref_3970_fdr	1	1	2	0	3	3	3	4	4	3
GCGATGCGGACCAAGC	ref_3970_fdr	26	12	31	24	15	8	19	13	20	11
TTCACTGGTAAGTAAC	ref_3970_fdr	13	16	17	18	6	14	13	11	13	8
GCACTCTGAAGTTTTG	ref_3970_fdr	58	64	94	83	70	75	57	59	65	56
CATTCGCATTCACTCG	ref_3970_fdr	4	4	9	4	3	9	2	2	2	3
GCTATAAATGACTTAG	ref_3970_fdr	3	5	5	2	6	3	6	5	5	8
GTTTGCCTTCGACCTG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTAACTTTATCTG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGACAGGTTGTCC	ref_3970_fdr	20	17	28	29	13	28	19	25	18	20
AAATCGTTCTACGGTC	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
CTATTGACGTAGTGTA	ref_3970_fdr	115	104	126	130	100	109	89	90	113	94
GTAAGTGATTAGGCAG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTCCATTTGTGTC	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATCGCCCCCATG	ref_3970_fdr	123	80	157	127	80	113	101	146	81	117
AGTTCACGGAGCCTTA	ref_3970_fdr	35	25	32	40	30	30	23	28	23	23
CCCACACTTTTTTTCG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGTGTGATAATAG	ref_3970_fdr	30	22	31	24	30	23	32	15	20	22
ATGGTAAGACAAGATT	ref_3970_fdr	15	8	2	10	3	4	5	4	2	6
ACGCACTCCACTCATG	ref_3970_fdr	0	0	0	0	0	0	0	0	0	0
GACATCAGGATTATCG	ref_3970_fdr	17	17	29	19	8	25	14	16	14	10
ATTGTGTTATTCCGGT	ref_3970_fdr	86	90	110	94	51	85	75	73	73	54
TGTTCCGTAATCCGCT	ref_3970_fdr	9	12	17	10	16	11	19	13	9	10
TCTGCAACGTCGACAT	ref_3970_fdr	52	22	90	71	58	46	55	53	36	53
TAGAGTCTTGAGAGAG	ref_3970_fdr	55	48	80	59	49	71	54	67	58	48
GCTATCTAGCCACGTG	alt_3336_missing	2	1	2	2	2	1	5	3	3	0
ATTGTTAAACTTGGGG	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
TTCGTCGTGTCTCAGC	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
TCCAAGGTTTACACTT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GTGTCGCCGGGTCTAT	alt_3336_missing	13	30	22	15	37	20	39	16	40	13
AGTTTTTGCCGCATCG	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GATCTCTTTGTCTCTT	alt_3336_missing	24	32	47	40	45	36	35	33	40	37
ACTCTAGGGGATAGGA	alt_3336_missing	3	17	9	8	8	10	9	10	9	5
CAATCTTCAAAGTCGT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
CCGTATGCTAATTTAT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
CCAGCGTAATAGGTTC	alt_3336_missing	1	7	5	6	11	5	10	4	20	6
TCGTATGTACATTTTG	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
TTACCCGCCCTCAAAT	alt_3336_missing	28	40	53	29	41	29	47	30	39	43
GTGTATTAAACTTTCG	alt_3336_missing	14	25	22	12	26	8	19	11	28	8
TTGTGAGGATTGGCTT	alt_3336_missing	15	19	7	12	23	12	24	16	21	9
TTCAGGCCCAGGTGAA	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
CAACAGTGTACTAAAA	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GTGCTCTTCTGATGGG	alt_3336_missing	26	32	33	22	43	32	38	25	59	19
CCTAAGTGTTCACAAT	alt_3336_missing	18	31	39	23	29	25	50	17	30	25
TCGTTCTTTTTTGCAG	alt_3336_missing	6	14	12	8	10	4	10	4	10	5
CCCTTTGGTGACAGAG	alt_3336_missing	4	15	13	4	12	10	17	6	13	3
TCTTGTCGCTCTACTT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
ACTAGGGATTTTATCG	alt_3336_missing	48	76	96	38	81	67	91	40	86	56
TGTTGCTAAGATATAT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
ATGCGGTGGCTGTGCT	alt_3336_missing	7	13	8	11	12	5	17	9	18	7
GATAGCCCAGCGACCT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GTTCATGTATGTGTTT	ref_3336_missing	7	8	4	6	18	4	11	10	13	5
GTCCCTTTAGGAGGGT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
TCATAATGTGTATCCG	alt_3336_missing	1	10	5	4	7	3	6	4	5	2
GCAACCCGCTAGCAAA	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GTAGCTTTGGCCAACC	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
ACACCGCGCTTTTTTC	alt_3336_missing	9	14	4	5	12	6	17	4	26	6
TGAGTTTCTGTCGGGT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
CACGAATGGCAGCGTT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GCATCGCGACAATTTA	alt_3336_missing	29	57	46	28	46	19	52	41	59	24
GCAGAAAGGTTCTCTA	alt_3336_missing	15	45	27	28	43	26	30	28	36	25
ATGTAGAATTTTGGCC	alt_3336_missing	5	8	11	3	6	3	12	6	9	6
ATATGGCTTTGTTGAA	alt_3336_missing	14	33	31	21	26	17	28	12	36	19
TCTTTGCCTCGCGACG	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
TGTCGTTTACGCGATC	alt_3336_missing	95	115	100	66	113	66	119	76	146	70
TGCAGCAACTATCCTA	alt_3336_missing	15	58	26	27	42	16	48	12	53	30
GTTAGGTCCCGGCCAT	alt_3336_missing	5	19	11	10	16	7	31	10	19	10
AGTACTCTTCTCTTGG	alt_3336_missing	6	8	10	9	6	8	12	6	18	5
AGTCTTACTTAAGAGA	alt_3336_missing	12	9	9	7	13	11	15	6	18	5
CTAATCTGAGCATTTT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GGTCGATCTCGTTTAG	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
TAAGCCCAAGTACGCT	alt_3336_missing	4	12	6	8	10	6	8	4	6	3
TGCCACCGTCGATTCT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
TTGCGGAAATGTACAC	alt_3336_missing	9	10	7	11	4	4	7	5	10	4
AATCAGGAATATGCTC	alt_3336_missing	7	9	11	12	10	5	4	7	11	4
ACGCGACGATTTACCT	alt_3336_missing	9	8	11	9	8	11	7	7	10	3
TCGCTGCTCAACCGTT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
ATTCATGGGTTTAACT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GAGTTCCAACATTTGT	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
ATTCGGTATTTACTAT	alt_3336_missing	7	5	6	2	4	5	10	6	6	2
AATAGATACGAGGATG	alt_3336_missing	1	1	1	0	1	2	3	1	4	4
CCTCAGGTGTGAGCGA	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GCTTTTATGCAAGCTC	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
CTCCGGTATCTTTGAA	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
GCGGTTACCAAAGAAA	alt_3336_missing	0	0	0	0	0	0	0	0	0	0
ATTAAGGAGACGCTCC	ref_5316_fdr	472	167	509	331	182	400	200	351	232	356
CCGCGGCCGCGAATGG	ref_5316_fdr	2	2	7	3	0	2	0	1	1	2
TCCCGACGTCAGGATC	ref_5316_fdr	0	0	1	4	0	0	0	1	0	0
TGGCGTTATTAAAGAA	ref_5316_fdr	76	39	126	73	50	85	42	83	72	81
CTTGTCACATTGACCG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGTACATTCCTCA	ref_5316_fdr	72	16	77	38	23	49	17	62	28	65
ACGGAGACGCTAAGAT	ref_5316_fdr	19	14	14	19	9	9	5	11	5	13
TGTGTGGAGATGTGGG	ref_5316_fdr	66	32	64	45	29	49	14	62	25	51
ACGGCCGAATGGTTTG	ref_5316_fdr	6	8	21	8	10	8	5	7	6	9
TCGCTATAAAGCCAAA	alt_5316_fdr	45	47	51	53	48	50	51	54	37	37
GTATTGGGCTGCAATA	ref_5316_fdr	46	18	61	37	24	38	24	30	21	44
ACGGCTTTGGCGGGGT	ref_5316_fdr	65	38	80	55	24	69	28	56	32	52
GGCAGGCGCCTCCCCT	ref_5316_fdr	48	38	74	45	37	48	40	44	24	57
TCTTTGCGTTTGTATT	ref_5316_fdr	19	1	12	5	4	12	3	6	4	10
CAGGGCGATATTCACA	ref_5316_fdr	116	47	155	126	73	119	61	106	64	132
TCGCTCTGCTCTAATA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
GACCCGTACTTCAAGG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CTACCCCGGTGTCTTT	ref_5316_fdr	14	6	23	8	10	11	6	6	10	14
GGTGGCCCTTTCAGTT	ref_5316_fdr	30	16	35	30	15	34	15	35	9	24
CAATCTGTTGTCCCTC	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
GTTACTCGCCCGTAGC	ref_5316_fdr	33	34	41	27	33	47	42	28	32	39
CAGGGAATGAGCTCTT	ref_5316_fdr	37	18	40	33	19	30	19	28	8	34
CGCGCATTATCATCGG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTGCTCACTTTA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTGGCTCATTAGC	alt_5316_fdr	184	90	176	118	92	173	111	139	78	141
CAAGACAGTCGGTTGG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCGTGTGATAGCT	ref_5316_fdr	125	49	114	105	37	96	47	89	69	90
TCCCAAACATGACGGA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TATGCGCTGGATTCTT	ref_5316_fdr	88	32	100	63	34	82	38	72	36	75
TAAGTCTCACTTCTAA	ref_5316_fdr	12	5	14	10	9	12	6	12	3	21
GTGGGCATCGTCTGGG	ref_5316_fdr	166	75	190	131	70	170	69	147	61	127
ATAATAACCAATGGAT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCAAATGGCTTGT	ref_5316_fdr	78	30	64	39	29	49	36	56	38	46
CGGTAAGATTTATATC	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CGTTGAACGCCTGGTT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGCGATCATTGCATCA	ref_5316_fdr	66	20	84	53	26	83	25	57	22	69
GCAATTTGGGGCATCT	ref_5316_fdr	89	38	101	84	37	81	44	61	44	88
CAGTATTCTCTATTTG	ref_5316_fdr	19	17	22	12	6	16	8	22	9	22
GCTATTTTTACGATGG	ref_5316_fdr	77	27	106	44	20	58	20	56	36	55
GTAATATTGGCTACGG	ref_5316_fdr	68	24	66	40	29	45	22	49	29	65
ACGATACTGTACCCGA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTGTGTGGCAAT	ref_5316_fdr	75	41	82	54	43	51	37	66	39	59
GGACGGCTTTGTTTGT	ref_5316_fdr	26	15	34	26	1	33	8	21	18	24
AGGTTATCAGTTCTAT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTTTTGTGAAAAA	ref_5316_fdr	12	24	13	10	21	15	23	19	29	15
AGCAGTTGTCAACAGC	ref_5316_fdr	69	32	92	87	30	66	42	77	37	75
ACACCGCCGGGGGCTG	ref_5316_fdr	81	32	93	65	32	72	43	69	35	68
AATAGTTTCTGTAATT	ref_5316_fdr	80	27	87	57	41	67	32	67	54	69
ATTTTCAGTTTCGTTG	ref_5316_fdr	137	54	174	94	33	101	61	131	58	96
AGTCTTCTATGCTTCA	ref_5316_fdr	162	65	206	132	76	157	67	152	73	130
CGGTACGTGACGAGTG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCCTGCACCTACT	ref_5316_fdr	99	34	93	53	46	78	30	84	42	75
CCTTTGGTACGTCGCT	ref_5316_fdr	16	10	12	13	7	13	11	11	6	19
CTTGCGTGTACCAGGT	ref_5316_fdr	1726	648	1894	1190	598	1605	733	1298	757	1414
CAGGATTGCTACACGT	ref_5316_fdr	46	13	43	28	11	34	22	39	24	28
AGTGTTCCTGTACATC	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
ACGCGGACTATGTCAT	ref_5316_fdr	62	20	68	41	20	41	27	52	37	55
GATTATCCTGATTTGA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TCGTATTTTGACATAG	ref_5316_fdr	22	3	25	17	8	18	11	19	8	16
GACTTTTATCTTAGCC	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCGTCTTAATGCA	ref_5316_fdr	15	7	32	15	13	18	8	13	10	10
TTATCCATACCTGATA	ref_5316_fdr	45	12	50	16	20	42	15	30	22	36
AGGCTTAGTAGTTAAG	ref_5316_fdr	115	40	126	86	54	83	51	80	44	88
GTTTTGGTAACACATC	ref_5316_fdr	10	4	11	13	6	13	4	9	7	12
TAGGTTTAGGTCACGG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGGAGTTGTACCA	ref_5316_fdr	15	2	6	10	8	12	3	9	3	7
TCACCTGTGTAGTGTA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTGTTCCTTTTGT	ref_5316_fdr	86	33	78	60	29	58	23	60	43	65
TTCATCCAAGGTTTTC	ref_5316_fdr	298	123	340	258	126	303	150	251	165	261
GTTTACGGTGACGATT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGGCATCTTCCCT	ref_5316_fdr	17	10	28	16	7	19	18	28	9	13
GTTGACGCACACGTGT	ref_5316_fdr	37	21	45	26	22	40	15	41	10	26
CCCGATGTTACCCCCC	ref_5316_fdr	40	27	69	33	20	44	30	55	42	37
GTTACACGAGATGTTA	ref_5316_fdr	45	18	48	37	13	54	18	46	19	42
CGAGGTGATGTTCGGT	ref_5316_fdr	36	12	43	17	3	25	19	24	15	21
TGTAGGTCGTGCCCTT	ref_5316_fdr	87	19	96	43	29	70	33	52	31	64
CTTTCTGCAGACTTCT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTATACAGCCGGA	ref_5316_fdr	215	93	207	173	93	167	120	180	117	192
GAGTTGCATGAGGATT	ref_5316_fdr	81	52	111	71	38	91	33	61	51	73
GACTTCCCTCTTTTTG	ref_5316_fdr	31	18	59	32	19	31	19	44	26	31
CACAGGTCCTGATTAT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGTTCTCCTCTTT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGCCGTTCGGCTT	ref_5316_fdr	191	78	205	132	77	196	96	133	90	155
CTATTTTGCCGGCCGC	ref_5316_fdr	132	77	130	114	67	94	60	86	67	93
TTGATTATGCACGTTG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGTCGGCTGCACG	ref_5316_fdr	53	35	51	46	31	52	34	45	23	60
GGGGGTCCATCATGCC	ref_5316_fdr	8	5	9	14	4	6	3	10	3	9
CAATGGATAGTTCTCT	ref_5316_fdr	47	25	50	31	32	27	23	37	24	43
ACTCCTTCATTCTTCG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
ACCATATATAAGTTGA	ref_5316_fdr	54	24	58	41	21	42	20	42	26	59
TCAGGTTAACAGAGAG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCATTAGGCCAA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGCAGCTAGACTC	ref_5316_fdr	28	49	29	28	47	23	62	27	66	19
CCCGTATTCTCTATAA	ref_5316_fdr	153	67	182	141	67	144	96	129	70	136
AAATATAGTGGCTTGG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
ATTACATGGATACACT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
ATTACCTGCCTACTTT	ref_5316_fdr	148	56	155	95	64	105	63	103	45	112
CGTCCAAGTCTGGGAA	ref_5316_fdr	53	18	52	38	24	42	27	42	23	36
TAACAACAATTAAGCA	ref_5316_fdr	100	36	131	100	58	107	61	85	56	82
TTTCCATTTCCACCTT	ref_5316_fdr	91	34	125	68	44	105	44	86	61	97
CCAACGTTGTAGGCTA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TTGTACCGTGTTTTCG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TGACCTCTGACGCGAT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCGAGTATGCGGT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGGTATTGGTATA	ref_5316_fdr	47	28	50	45	24	42	27	34	27	39
AAGACGTCCGCCAGTA	ref_5316_fdr	63	23	52	51	21	46	27	42	14	34
AGACGGGATGGCGTCT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCCAGTCTTTGGT	ref_5316_fdr	55	21	58	38	14	32	13	41	12	38
GTACTCGGTACGTACT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAGCATTCGCTTG	ref_5316_fdr	74	27	70	49	27	42	28	56	37	59
GGATTTCGGTTTTCTA	ref_5316_fdr	24	2	20	9	12	18	7	9	12	19
ACGCTCCGCATGGGGT	ref_5316_fdr	165	66	163	134	61	119	81	128	52	134
GTGTATTAGCCATCTT	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGAAACCGTTCCG	ref_5316_fdr	4	9	20	12	10	7	6	12	9	6
TGAGCCAAGATCGTAC	ref_5316_fdr	44	21	51	48	30	29	24	39	36	43
TGCTTGCTAATTTTGC	ref_5316_fdr	547	279	613	434	270	536	248	428	262	446
CTGCATCATTAGTGCT	ref_5316_fdr	79	54	103	81	46	125	53	102	60	98
CATTAAAGAGTCACGA	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
CACAAATACTGAGCAA	ref_5316_fdr	210	72	242	175	108	187	78	198	91	181
TCAACCGGCAGGTTTG	ref_5316_fdr	11	8	25	11	10	26	7	18	11	18
ACATCACAATTGTAGC	ref_5316_fdr	67	13	58	49	27	50	16	46	28	54
ATGTCGCGCTCTACAC	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
GCACCTCCAATGGCCT	ref_5316_fdr	47	13	39	23	18	35	24	28	11	24
GTTATCTGTGCGTCTG	ref_5316_fdr	66	46	65	29	28	65	28	54	31	55
TATTATAACTTTCTGG	ref_5316_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGACAAGGGCATT	ref_5316_fdr	66	28	66	56	29	63	24	48	29	44
CAGAATTTTCCGCTAA	ref_5316_fdr	7	5	13	5	2	8	1	6	3	9
GTGTGTGTGGTAGCCA	ref_5882_new	18	25	22	16	15	15	15	16	28	18
TTCCCTCTGGAGGCTC	ref_5882_new	93	118	113	98	116	76	147	66	149	67
TAAAGCACAGCTCGAT	ref_5882_new	0	0	0	0	0	0	0	0	0	0
ATATCTAATTGGTCCG	ref_5882_new	3	13	8	14	8	10	17	6	7	7
ATTAGATAATCTAAAG	ref_5882_new	7	2	4	4	3	8	3	5	4	4
ACACTTGATTTCTTGC	ref_5882_new	30	50	43	45	58	40	34	29	28	21
CGTTAGGTCTCCTCCC	ref_5882_new	10	23	21	12	20	19	31	11	21	21
CAGTTACCCAGGTTCG	ref_5882_new	0	0	0	0	0	0	0	0	0	0
GACGGAGGAGCCAAGT	ref_5882_new	27	33	33	29	33	41	42	24	36	24
CATTAACCTATGGTCT	ref_5882_new	27	30	37	48	39	33	34	22	37	25
TCTCACAGCCCTAGTT	ref_5882_new	84	87	109	86	72	68	78	59	86	57
ACATAGCGACCCGTTG	ref_5882_new	18	27	19	31	18	14	28	17	26	26
TTTTGATGTGGAGGCA	ref_5882_new	18	15	17	5	13	13	14	8	12	8
AGGCCAGAGTGTCATG	ref_5882_new	177	260	235	194	204	188	261	150	251	196
TGGCCTGACGGATCGT	ref_5882_new	447	416	550	447	425	431	467	415	425	378
GATCATCGGAGTTCCA	ref_5882_new	6	16	19	21	14	13	16	16	6	14
TCTACTGCCTTGCGCA	ref_5882_new	0	0	0	0	0	0	0	0	0	0
ACACCCTTCTCACTTC	ref_5882_new	69	78	82	83	76	76	111	48	84	58
AACCGGAAAGGGTGTT	ref_5882_new	3	3	3	5	2	5	9	2	7	3
TGAACAGATTAATGGG	ref_5882_new	7	6	11	6	11	7	9	6	7	5
CGTTGTATTGATGGGG	ref_5882_new	0	0	0	0	0	0	0	0	0	0
GCTTCACGGATCCTGG	ref_5882_new	24	23	24	29	21	25	27	26	22	23
ATCGTCGCCGCCATAG	ref_5882_new	0	0	0	0	0	0	0	0	0	0
TTCATGGGCTTGTGTT	ref_5882_new	0	0	0	0	0	0	0	0	0	0
GGATTAACGTTTAATT	ref_5882_new	36	43	56	56	55	56	45	46	63	46
AGGATATGCTCCTACT	ref_5882_new	0	0	0	0	0	0	0	0	0	0
ATATTTGCTTGTCGTT	ref_5882_new	19	15	18	11	16	10	14	20	19	8
TTTACTGCCTTGCGCA	ref_5882_new	277	278	368	268	333	276	321	261	324	269
TTGCAAAGATCTTCGG	ref_5882_new	54	57	77	72	62	65	71	74	66	51
CTCCACTATGCAAGGA	ref_5882_new	0	0	0	0	0	0	0	0	0	0
TATTCTCTTCGTTCGT	ref_5882_new	53	54	64	65	57	62	65	51	54	52
TGTCGCTGTACGCTAA	ref_5882_new	28	35	43	32	27	29	43	19	28	22
CCCCTGTAGCCGATCT	ref_5882_new	3	1	1	1	2	2	0	2	1	3
CCGTCGCAACCGATAC	ref_5882_new	87	161	87	91	188	92	193	76	201	67
TCTAGCTATAGAACAT	ref_5882_new	31	56	39	30	42	34	46	27	55	31
TGCCTAAGGTTTCCGA	ref_5882_new	13	9	6	12	11	4	5	6	5	11
GTTTTATGGTGAGAGG	ref_5882_new	32	36	49	37	37	35	39	27	33	36
TAACACGCTTTTTGTG	ref_5882_new	19	53	46	29	53	20	48	40	50	35
GTTCGGTTATTTCTAT	ref_5882_new	125	155	168	113	165	117	149	132	159	111
CCAAAATGCGGTGCCT	ref_5882_new	20	26	13	24	27	18	26	12	28	13
GTCACTCCACGTGATC	ref_5882_new	10	14	8	8	7	7	9	3	10	3
GACGCCGAACACGTCC	ref_5882_new	0	0	0	0	0	0	0	0	0	0
TATAGGTAAAATTAGA	ref_5882_new	17	24	15	17	21	28	14	19	35	8
AGGGGGCTTGGTCCGT	ref_5882_new	61	69	81	60	60	62	63	59	67	52
CGATTTATTTTGATTT	ref_5882_new	62	50	79	78	39	62	47	65	73	69
ATGTTCCCCCTGTTGT	ref_5882_new	0	0	0	0	0	0	0	0	0	0
GGCTTGTTCTGACACT	ref_5882_new	66	56	67	72	64	56	62	47	64	57
GGCGAGCTATGTGAGG	ref_5882_new	16	19	22	31	18	22	23	20	20	10
CCTCAGAGTCAGGTGA	ref_5882_new	11	23	15	15	18	8	13	11	16	6
CATACGTTCGATCACT	ref_5882_new	30	36	31	32	34	35	48	35	34	27
TTTTTACTTTAACACA	ref_5882_new	7	7	7	3	9	1	9	3	5	5
CCAAGGCTAAATTCCC	ref_5882_new	0	0	0	0	0	0	0	0	0	0
CTACGATCAGCATTGC	ref_5882_new	47	42	56	51	46	53	38	47	44	41
TGTTGCGACGGAATTT	ref_5882_new	0	0	0	0	0	0	0	0	0	0
CTTGTCCGCTTGTTTT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CCTGTAAGACTGGAAT	ref_1851_RC	12	9	16	5	13	15	14	14	15	11
TCCCGCGCTTTTCGTC	ref_1851_RC	46	35	41	27	24	31	48	25	46	32
TATCTGTGAGTTTTAC	ref_1851_RC	29	35	35	34	29	13	35	38	42	19
TCTTTATCCTTCCATA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
AGCCTGCCTTGTAAGA	ref_1851_RC	38	33	49	27	54	35	64	36	51	31
TCGTATCTAGGGCGCT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CTCACTTTTCTAATAT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CATCCTTATCTTCGAT	ref_1851_RC	19	31	26	14	29	15	26	18	29	21
AAAGACCAATTGTGAA	ref_1851_RC	39	41	36	22	40	29	45	18	34	39
TTCCGGCACAGTGCGT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CCCACATTACGCTAGA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TGGCGCCAAGATCGGA	ref_1851_RC	37	20	26	27	24	35	26	26	32	22
TAGTTAGGTTAAATGT	ref_1851_RC	37	72	51	32	57	30	51	43	64	40
CGATTTGGCCATAACA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TGTTGGGATATGAGAG	ref_1851_RC	33	38	47	15	45	31	48	23	44	28
ACGTGGTGATGGTGTT	ref_1851_RC	46	71	40	35	55	32	69	41	45	33
ACACCTCTTAACGGTG	ref_1851_RC	39	51	56	48	66	38	47	41	57	48
CAGGACGGTCCATTTC	ref_1851_RC	41	56	68	63	47	50	76	53	71	55
AGTAAGGTCCCTCTGG	ref_1851_RC	14	11	10	17	12	13	16	8	14	12
CTATTTTTCAGGGTTG	ref_1851_RC	56	62	72	94	70	55	66	52	90	63
TTGTTTCCGTAACTGT	ref_1851_RC	13	11	13	10	14	16	12	14	13	13
ATACACCTGGTCGACT	ref_1851_RC	13	23	11	9	16	4	14	12	19	8
CGTAGGAGGCTACAGC	ref_1851_RC	5	6	4	13	11	6	6	4	5	10
TTTCTTCACTGTCCCA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TTGCTTTCGACCATAC	ref_1851_RC	6	21	14	17	24	9	15	13	27	13
TTTGTTATTTCGCATG	ref_1851_RC	34	41	37	40	46	26	42	36	42	34
TCTGCTGTTAAGCGTC	ref_1851_RC	3	6	6	5	3	5	6	5	5	4
CCGAGAAGCTTGGCGC	ref_1851_RC	121	104	138	79	119	116	104	110	113	84
CATTAATTATTCCTGT	ref_1851_RC	5	5	9	6	3	1	2	3	6	1
GTATTCGGAGGACAGT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TATTTCGCTGACTACT	ref_1851_RC	25	44	47	30	43	37	48	32	48	23
TCCGGGCGTTCATAAG	ref_1851_RC	12	13	16	14	24	11	14	11	14	11
CGCACAGCCTGGCATT	ref_1851_RC	17	23	13	18	20	11	19	11	41	11
TACACGTACACTAGAG	ref_1851_RC	4	7	4	3	5	3	7	3	9	1
TCTTCACGACATGCAC	ref_1851_RC	6	12	15	6	13	12	13	9	13	5
TTCCCGTCTGAACTTG	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
GCACGAACTTGTAGCA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
AAATTGCGTGTTGCTC	ref_1851_RC	9	11	13	9	11	6	15	9	11	7
GTACTCCTTTTACCAG	ref_1851_RC	2	3	4	2	7	3	3	4	6	1
TGATCATCGTCCACGT	ref_1851_RC	34	24	35	19	30	28	25	37	22	16
CTGCCGCCGACGACTC	ref_1851_RC	9	18	21	19	25	16	26	17	46	8
CCACGTTTAGTCATCG	ref_1851_RC	94	123	124	115	136	109	145	106	173	120
CAGATCCCAGTAGATA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
ATTAACTTGTAGCGAT	ref_1851_RC	17	26	25	24	29	20	16	21	31	21
ATCGCCCATCAAGTAT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TAAACTACGCCCAAGG	ref_1851_RC	19	22	38	25	28	16	31	22	22	14
GAGCAGAAGTCGTTTT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
GCCGCGCAATTGGTGT	ref_1851_RC	83	103	107	85	101	68	82	51	109	69
TAATACCCGAAATTTA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TGCTCTAGTCGGAGCG	ref_1851_RC	72	66	92	69	56	79	92	81	83	50
CTATTGATGCTTCTCA	ref_1851_RC	82	98	100	74	90	61	105	67	101	58
TGCATGATCGATAACG	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
GGTTATTTCAAAAGTA	ref_1851_RC	24	31	45	28	29	31	29	30	42	15
CAACCGGCTTTGATGC	ref_1851_RC	52	113	66	64	105	44	125	55	111	63
GATTATCGCATGGGCA	ref_1851_RC	13	15	22	21	19	7	26	16	12	15
TGGAACAGCAAGCGAG	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TTATGCGCTTGGCATA	ref_1851_RC	40	51	57	57	65	61	69	41	76	35
ACATTGTACCGTGTCG	ref_1851_RC	20	34	15	11	36	21	33	13	27	16
CCGAGTGACGGTGGAG	ref_1851_RC	26	26	26	26	35	23	37	34	41	13
CACACACCAGCGACTG	ref_1851_RC	11	16	19	17	20	17	19	14	25	15
TTCGGCCTGAACCGCC	ref_1851_RC	82	86	95	69	77	64	78	53	93	54
GCTCACATGGTTGAAT	ref_1851_RC	20	43	23	23	25	17	30	20	34	20
GGTCTCGGTTTGCAGC	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TTTGAATGTCTCTATA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CAGGTTAGAAGCAGGG	ref_1851_RC	6	8	7	10	3	6	8	3	10	4
TCTGGATTAAAGAATT	ref_1851_RC	9	18	8	13	17	13	10	6	3	8
AGCTACATCACGTTGA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CCTACGGCATTGTGCA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CCAAAGTCCACTTAGT	ref_1851_RC	14	18	21	12	23	18	18	17	35	22
TATGGCACCGCCAGCG	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
GTGAAAGTTGAGTGAG	ref_1851_RC	15	10	16	7	6	5	13	10	14	2
TATGTTTCATTCCTCG	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TGTTCAATGCATTGGT	ref_1851_RC	53	86	84	70	73	54	96	57	71	45
TGCTCGCATTGGAGTG	ref_1851_RC	52	57	76	45	56	55	80	54	72	48
ATATCGTAATGATCTA	ref_1851_RC	5	4	14	14	6	6	5	4	7	3
CTGAGTATGCTAAGGT	ref_1851_RC	96	168	134	111	146	114	153	102	179	89
TCACACCTCGGAGGGA	ref_1851_RC	5	9	11	2	3	5	8	2	12	8
CCAGTGGGTAGTCGAT	ref_1851_RC	64	62	52	86	72	64	63	56	67	51
ACTAACGAGGCTTGCC	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
GTCTGATTAGAGCATC	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CTCATACTCACGGTGG	ref_1851_RC	12	16	9	12	12	12	15	8	16	9
TTTTCCCACTCGTGTT	ref_1851_RC	29	32	23	25	26	22	21	17	28	25
ATCGGTTGGAGAACTC	ref_1851_RC	4	2	4	4	3	4	2	4	9	4
CCAGTACCGGGCGACC	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
GCGAGCCGAGTATGTG	ref_1851_RC	72	110	86	73	113	71	130	88	122	61
GTAATACATCGGTGTT	ref_1851_RC	40	52	59	54	71	42	70	43	57	52
GAAGGAGTTCCATTCG	ref_1851_RC	72	99	83	75	76	62	91	78	126	70
GATTCGGTTCCGGGCG	ref_1851_RC	58	51	61	54	48	46	39	52	66	47
CGATTATTATCTAACG	ref_1851_RC	23	37	29	21	35	28	38	21	29	21
GCTTTGGTTGTTTTTC	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CAAAGACTTTGCGGAG	ref_1851_RC	15	18	30	15	17	13	15	20	28	15
AACTTTACCTCTCTTG	ref_1851_RC	10	17	8	13	18	9	20	23	17	12
TCGGTTAAGAATACTC	ref_1851_RC	29	44	24	13	43	34	47	16	46	11
CCGCACCCCACCTGTT	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
CCTAATGTGTGTGGAA	ref_1851_RC	22	24	28	26	32	18	44	20	33	19
TTATCAGTAACCCCAA	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
AAAGATACGCGAGTGT	ref_1851_RC	32	32	18	25	29	25	32	31	43	26
TGCAGATACCCAACCC	ref_1851_RC	14	14	26	11	13	15	20	7	31	11
TCAGTTACTTACAGAG	ref_1851_RC	0	0	0	0	0	0	0	0	0	0
TGTCAAGGGAAGTTCG	ref_1851_RC	44	43	38	46	51	41	63	49	69	46
TTAAAATTGCCCCAGA	ref_4820_reverse	8	7	9	5	16	4	8	13	7	10
TTGCCGTGCGATTCCA	ref_4820_reverse	20	20	18	14	16	23	31	15	29	14
TACTTTTCGAGCCGAG	ref_4820_reverse	6	4	6	4	4	4	2	3	4	3
TTTGCAACGTTCATGT	ref_4820_reverse	8	19	10	12	17	16	20	5	9	7
CTATTGGTGTGTCATC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
ACGAATTACAGTTACG	ref_4820_reverse	41	62	63	50	94	48	69	51	82	56
TCTTCGCCATCGCTCG	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGGTCAATCGACC	ref_4820_reverse	28	22	39	23	42	22	28	30	21	27
CAAACAGCAGCCCTAA	ref_4820_reverse	4	5	10	1	3	1	7	4	5	4
AAATGGAAATCTATCA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTGTGTTCCCGTA	ref_4820_reverse	23	43	42	24	39	24	31	28	69	24
GTTAGCCCGGTACTAT	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
AGCAGACTTAGTCGTA	ref_4820_reverse	40	68	44	48	50	32	54	38	65	35
ACAGTTCGTGTCCATC	ref_4820_reverse	126	229	173	134	214	166	197	121	214	126
ATGCAGTCCAGTGCCA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
CTTGACTCATCTCTCT	ref_4820_reverse	49	62	69	47	79	51	56	45	53	49
GCATAAAACAGTTCAG	ref_4820_reverse	29	41	28	28	35	32	37	24	38	20
TAGCGTCTTTAAATGG	ref_4820_reverse	7	8	4	13	5	6	10	7	10	7
ACTTAATGCAACCTTT	ref_4820_reverse	33	38	54	42	53	44	52	55	46	37
TTGCATCAGCCTATTG	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
ACTTAAGAAATGTAAG	ref_4820_reverse	15	26	28	23	32	19	38	20	25	15
AGGCTCTAGACGCTCA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTTATATACATCA	ref_4820_reverse	3	2	3	2	0	2	1	7	3	3
TCTTGTTAGCGGTGTG	ref_4820_reverse	1	9	5	1	6	4	2	5	1	2
CTACCTTCTCTGTTAC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TATTACACCCCAGACG	ref_4820_reverse	36	38	40	27	49	30	68	26	50	29
ATCAACTTCAGACTTC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTCTTTCTGCTCC	ref_4820_reverse	52	44	62	64	38	45	45	44	42	44
ATGACACGTGCACTTG	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGCAGAGGACTAA	ref_4820_reverse	66	79	113	75	97	69	112	71	80	81
ATGCGTGGCCCACTTC	ref_4820_reverse	2	4	2	1	1	7	4	1	4	5
GGTGTTAACTTCGGTC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
AGTCACTTCCATTAGT	ref_4820_reverse	81	144	104	81	126	89	166	83	143	77
CACTCTCACTCTATGG	ref_4820_reverse	2	9	3	2	12	1	5	2	12	2
TATTTTACGTCGGAGG	ref_4820_reverse	24	43	40	34	29	27	34	32	28	25
AGTCACCTCACCTTGA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAATCGTGTCTAG	ref_4820_reverse	3	8	5	2	8	8	9	5	8	4
GTGCGCATCGTTTAGG	ref_4820_reverse	38	33	31	25	38	37	26	31	40	43
ACTATCGTTATGTACT	ref_4820_reverse	35	31	36	42	32	39	36	29	33	29
TATATCATTGGAATTT	ref_4820_reverse	53	69	45	36	40	37	44	33	62	35
GCAGGCAAGATCATTC	ref_4820_reverse	32	30	35	28	35	35	33	37	35	27
GCCCATTGCAGTTTCA	ref_4820_reverse	1	2	1	0	2	1	2	1	4	1
GCTCCGATTTCCGAAG	ref_4820_reverse	6	16	17	12	18	11	12	11	11	11
TTCTTTTTTTTTTCGG	ref_4820_reverse	9	6	9	7	13	5	4	6	17	5
AACGTGACGTAGAAGC	ref_4820_reverse	51	40	47	50	41	51	60	45	43	44
TTTCCACTTCGGGGAT	ref_4820_reverse	27	28	33	25	25	25	17	31	34	28
AGTTTTTTTAGAGGGC	ref_4820_reverse	45	43	42	49	48	27	63	28	68	42
GATGACTTGCTAACAT	ref_4820_reverse	18	14	23	17	15	24	24	19	25	15
TGCTCCTTACCACCAA	ref_4820_reverse	49	109	89	79	96	62	120	66	119	63
CCGTGTTGGAGTAGCA	ref_4820_reverse	15	27	19	23	15	17	23	16	34	20
TTCCGCTCTTGCTAAT	ref_4820_reverse	98	113	102	99	123	99	123	97	125	83
CGCTTTTTATGCGATA	ref_4820_reverse	0	1	1	0	2	3	1	0	1	0
TAGCTCGTGTCCCTGG	ref_4820_reverse	13	8	12	7	12	10	6	7	6	5
GTCACCAGCCTTGAGA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
GTCCACGGGGCTTAAT	ref_4820_reverse	38	59	52	55	64	49	56	32	60	42
GCTCCCTGCATGTCGC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCACAATAAGATT	ref_4820_reverse	45	66	61	43	68	38	74	40	69	27
TCCGAATTAGAAACCC	ref_4820_reverse	41	52	44	40	43	44	56	43	59	42
ACATGGGACACGGAGT	ref_4820_reverse	1	0	0	1	2	0	1	0	2	0
TAATTACCAGTCTGTA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCCTCGTAGTCTT	ref_4820_reverse	20	22	28	21	35	17	28	24	22	16
CCGAAAGTTTCCGCGG	ref_4820_reverse	38	49	42	32	49	32	42	38	67	31
CGCTAGGTACCTACTT	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCCTACAGTTCTG	ref_4820_reverse	15	20	18	10	28	14	27	4	28	19
TGTGCTTGTTGCCTAC	ref_4820_reverse	26	52	28	24	52	31	39	27	60	26
GGGGGTTAATGACGTT	ref_4820_reverse	59	56	69	46	73	66	61	81	68	53
GTTTCCTTCAATATTT	ref_4820_reverse	2	1	0	1	1	1	1	2	1	1
TTTTTAGTTCTTCTGG	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTTGTGCCGTGTG	ref_4820_reverse	2	0	2	1	3	3	2	3	1	0
TATAAAGTTCAGTACT	ref_4820_reverse	8	8	9	5	6	15	14	11	12	4
TGTTTAGTATACGACA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTTGGAGCTTTCC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGCTAGGTACTGC	ref_4820_reverse	70	84	92	61	88	83	100	65	138	80
AGAATTGCACCCACCG	ref_4820_reverse	21	19	43	31	17	25	32	31	23	25
GGTCTTTATTCATTGA	ref_4820_reverse	6	9	3	3	2	0	7	3	1	4
CATCCATGGTTTACTG	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGCCTGTAGTATA	ref_4820_reverse	59	104	57	76	107	69	101	62	131	58
TGTCGCTATAGCTGGT	ref_4820_reverse	3	9	10	13	6	6	6	7	12	4
TGTTGAAGGCCCGACA	ref_4820_reverse	19	28	27	31	14	23	23	20	22	18
ACCTGTATGTTTAGAC	ref_4820_reverse	48	63	58	52	66	43	70	33	46	41
AGACACGTGGAACATC	ref_4820_reverse	19	10	24	23	28	22	22	23	25	13
TGGATTAGGCTTAAGT	ref_4820_reverse	4	8	6	7	15	13	23	11	11	7
AACCTCTCCTGAGGCT	ref_4820_reverse	16	17	13	16	18	6	18	15	20	10
TCCTAGCAGCGTTGTG	ref_4820_reverse	15	7	13	10	10	11	16	4	18	2
TTTGGACAGTCTGCGT	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TGCATACTGGTCAACG	ref_4820_reverse	23	31	26	41	40	30	41	19	29	21
CCAGAAATGGCGTTGC	ref_4820_reverse	63	57	77	65	62	57	68	52	59	54
CTGAAACCCTTCCTCC	ref_4820_reverse	10	8	18	7	17	9	15	12	8	5
CTAACTGCGAATTCCG	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
CCACGATTCAGCACAA	ref_4820_reverse	43	66	50	50	92	62	78	47	70	49
GGGCTAGCGCTCAATA	ref_4820_reverse	29	29	29	18	35	22	42	22	40	27
CAAAGCTTTGATCGCG	ref_4820_reverse	9	12	17	18	18	22	27	22	16	14
CTTTTCTGATATGGTA	ref_4820_reverse	38	54	51	49	66	43	43	46	64	45
TGGCCCACCAGAGTCG	ref_4820_reverse	36	36	45	34	52	41	44	27	31	30
GGTGCTTACCGACGCT	ref_4820_reverse	43	67	57	47	80	51	72	38	70	34
ATATGGTTAATCGAGG	ref_4820_reverse	31	36	48	31	36	29	37	47	58	27
CATATATCCGCTTCAG	ref_4820_reverse	188	224	253	196	232	197	246	183	243	189
AAAACATTCCCATGTT	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TCGCAGTAACTTGGCT	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTCGGCATCATAC	ref_4820_reverse	44	56	81	58	76	70	58	49	84	39
TTCTCGAGTGGCGCAC	ref_4820_reverse	54	51	56	29	45	35	46	29	49	32
CTACTCGTAATGTCAC	ref_4820_reverse	19	20	10	10	9	11	19	18	19	14
CTTTGCCTGAACACCC	ref_4820_reverse	13	18	19	17	22	17	16	11	24	10
GTCGTTACACGCCACA	ref_4820_reverse	27	26	21	19	32	19	27	20	27	21
TAGAAGCAATTCACAC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCCATAAGCCCCT	ref_4820_reverse	16	12	19	13	14	16	18	17	22	11
TGTATGGGTGTTTTGA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
AAGATTGTAATAACAT	ref_4820_reverse	17	21	21	27	15	22	24	13	34	21
CCCGCCGACCCGGGTC	ref_4820_reverse	25	39	21	21	30	16	28	19	45	21
CAACCTCATAGGTGAA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTGTTACAGCCGC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TGATCACCGTCTCGTG	ref_4820_reverse	3	5	3	6	8	4	4	3	7	6
CCCTGGCGACACTTTG	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
GATATCGTTTGATCAA	ref_4820_reverse	39	38	39	26	33	35	27	21	45	27
TGTCCGCCTCACGGTC	ref_4820_reverse	129	173	154	97	166	112	171	142	162	129
CCTCGGATTCTGGTCA	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
GTATACGACATGCGTC	ref_4820_reverse	0	2	1	0	1	2	1	0	0	0
AGTGCAACTGTATTTC	ref_4820_reverse	9	21	16	14	15	9	23	9	24	11
CGTTTTTGCGGGCCTC	ref_4820_reverse	14	17	24	25	27	29	17	18	30	15
TCCTCAGTGCAGTCTT	ref_4820_reverse	4	6	6	7	6	7	10	3	9	3
GACGTACATTGTAAGC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTCCCTTTCCTGC	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTGCGTAGGCTTG	ref_4820_reverse	27	44	55	44	44	39	75	32	48	39
GGCGCCTATACACAAG	ref_4820_reverse	28	50	52	45	57	42	47	37	47	28
TATAACTCATGTGCGT	ref_4820_reverse	0	0	0	0	0	0	0	0	0	0
TACCTATGTTCGAGCC	ref_4820_reverse	12	10	26	12	17	12	25	16	14	10
TGCCAGTACTTACGGG	ref_4820_reverse	25	21	16	13	19	26	27	22	26	12
ACTCAGCACACCATGC	ref_4820_reverse	1	5	3	2	12	3	10	0	9	2
TACGTGGTATCAGGAT	alt_6034_new	68	47	66	58	58	54	77	46	56	57
CAGGGTAGTTCGGCCC	alt_6034_new	50	50	57	54	42	37	45	45	68	29
CCAGTGAGTTAACTAT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
ATCACAATGTTTGACA	alt_6034_new	23	25	26	27	37	26	26	33	25	27
TAATCCAAACTCACCT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
ACCATCCAAATCTGGG	alt_6034_new	0	0	0	0	0	0	0	0	0	0
CCTTAAGTGGCTTCGC	alt_6034_new	0	0	0	0	0	0	0	0	0	0
ACCCTTTCGCCGATCT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
TTGTCGAGGTCTTCGC	alt_6034_new	0	0	0	0	0	0	0	0	0	0
GGCGCAAGGGCTTCTA	alt_6034_new	124	151	183	165	169	136	208	149	173	137
GGTTATCAGTCCATAT	alt_6034_new	27	34	41	28	38	39	39	33	46	25
GGCTCACAACCCGTTT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
TCCGAGACCATTCGAA	alt_6034_new	37	51	43	36	53	27	42	44	65	26
TACTTAGAGCTTGTTC	alt_6034_new	39	31	31	34	33	33	35	31	35	39
CAAGTGTTTAATCGCC	alt_6034_new	15	36	25	14	26	21	31	28	28	16
CGCCTTAGCTCGCGAT	alt_6034_new	2	0	6	0	4	6	3	1	6	4
GGCCATGCCTCATTTC	alt_6034_new	0	0	0	0	0	0	0	0	0	0
CTAAGTCGTAATAGCA	alt_6034_new	36	62	46	49	44	42	61	33	51	35
TCATTTAGACTCAGGC	alt_6034_new	8	7	9	10	8	3	5	9	6	5
TTTCTTTGGGAGTAGG	alt_6034_new	22	33	56	38	37	32	33	29	33	23
CGCTTACGATTAAACT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
CAAGAGGTTGATCCGT	alt_6034_new	26	36	30	25	22	16	32	29	32	30
TACTAGCGCATTTTAT	alt_6034_new	22	43	33	26	38	29	31	36	30	29
ATTCTCGTCTTCTGCC	alt_6034_new	30	24	37	23	22	26	17	20	19	19
CTCTACCTAAGAGTCC	alt_6034_new	25	26	22	30	21	13	31	29	28	30
CCCGGAAGTCAACCCA	alt_6034_new	51	39	70	61	42	47	60	47	62	28
CCTTATATGACTCACT	alt_6034_new	29	27	35	20	29	34	34	38	38	30
TTAGGCCGCCTCGACA	alt_6034_new	0	0	0	0	0	0	0	0	0	0
CTTCTCGTCTTGCCTC	alt_6034_new	3	3	4	5	2	4	8	3	5	5
TGCGCCTTCAGTACCA	alt_6034_new	73	101	108	75	104	82	89	80	93	77
TAGGGCATGCTTATTC	alt_6034_new	46	30	61	47	38	47	42	52	39	33
GCGGTAAGTAAAGGCG	alt_6034_new	12	12	12	20	7	16	11	11	19	9
GTGGAGGGCAATCTAT	alt_6034_new	7	7	10	4	8	8	12	4	6	10
ATAATGCACCTTTTCG	alt_6034_new	62	69	91	71	63	69	70	75	78	80
ATACACTTGCGCTTCC	alt_6034_new	22	31	40	17	23	23	29	24	30	24
CCGCTCGACCCCAGGA	alt_6034_new	62	74	97	74	52	66	63	60	72	70
CGATCTGTCGTTTAGT	alt_6034_new	61	74	60	44	70	57	64	46	63	45
CTTCCAGTTCCCAACT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
AAGAGTTCCGGTGACA	alt_6034_new	9	14	8	8	14	10	11	9	9	11
CACCGGATGAACGTCT	alt_6034_new	18	35	36	18	38	26	27	28	41	18
CTGCCTATGTCGTGAC	alt_6034_new	0	0	0	0	0	0	0	0	0	0
AACGCATCCGATAAAT	alt_6034_new	40	31	28	55	31	23	20	33	34	20
GCCGCAGATATCACCT	alt_6034_new	46	37	59	39	46	38	51	51	55	47
AATTGATCCGTTTTAG	alt_6034_new	22	26	20	27	19	14	10	23	13	12
TAATAGCAACTCATTT	alt_6034_new	13	18	38	22	21	21	30	28	26	9
TTGTTCGAACGGGTTT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
CGTCAGCTCAAACGCG	alt_6034_new	35	37	21	37	38	22	46	18	28	22
TTCGGGCATAGGGAGC	alt_6034_new	13	9	10	17	13	12	10	9	8	6
CGCCATGTGGACCTCA	alt_6034_new	50	42	55	37	56	48	62	43	55	39
GTGCGGCCGGTTATCC	alt_6034_new	6	22	14	18	18	5	18	11	25	5
TCAGCATTGTTGTCCG	alt_6034_new	14	19	23	13	24	9	24	14	33	20
ATCCGTCCAAGGGGTT	alt_6034_new	13	18	12	5	15	13	17	18	14	12
TTGCACTTTCCCTTGT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
TTTCAGCCAACTCTAT	alt_6034_new	3	8	4	9	6	4	5	5	7	3
AGGCCCCAGTGGCGAC	alt_6034_new	0	0	0	0	0	0	0	0	0	0
GCGGGCCAGGGGGGAA	alt_6034_new	6	5	3	4	5	1	4	3	2	3
TGGTCAACTTGGTATC	alt_6034_new	89	94	122	88	93	87	98	89	104	60
GTGTGGCAATAGTCTC	alt_6034_new	147	153	172	143	153	150	154	129	160	160
GTGTTAGGTTGTAAGG	alt_6034_new	75	67	76	60	79	67	95	67	80	71
ACGCTAGGCAGGTGGG	alt_6034_new	35	22	37	26	29	31	35	25	36	31
TGCCAATCGATCCTTC	alt_6034_new	9	16	11	16	14	13	7	9	20	3
GCGCTACCGCTCGACG	alt_6034_new	3	8	16	10	10	6	3	10	18	7
CTAGGCTGTTGTCTAG	alt_6034_new	0	0	0	0	0	0	0	0	0	0
GTACTTCCAGTGCCCC	alt_6034_new	12	5	17	9	15	5	22	12	10	9
TGTGCCGTGGGGTATA	alt_6034_new	8	5	7	8	4	8	7	2	11	8
TCATGTCTTCCGTAGC	alt_6034_new	56	75	67	61	75	49	56	51	56	59
AGTCTAGAGGTTAAGA	alt_6034_new	0	0	0	0	0	0	0	0	0	0
CAGGCTCCGTCGCGGT	alt_6034_new	20	19	21	17	24	9	28	14	25	17
ACGAACGGAATTAGGT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
GTTTATCGTTGTGGTG	alt_6034_new	0	0	0	0	0	0	0	0	0	0
TCTATTTTCTAGACTA	alt_6034_new	0	0	0	0	0	0	0	0	0	0
TCTCGCGCCCGCATCA	alt_6034_new	18	34	37	22	30	32	34	21	27	22
TCGTGATGAACCACTC	alt_6034_new	29	25	30	27	20	33	22	11	32	30
ACATAGCGTCCTCCTT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
AGCAATTCTCTAGGTA	alt_6034_new	49	37	62	54	45	54	36	52	53	34
TTCCAAGGTACATCAG	alt_6034_new	8	4	11	4	11	7	7	7	8	9
AATTCCTTCTGACCCT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
GTCGGACCTCCGGGGG	alt_6034_new	84	81	95	91	77	74	83	76	85	83
GGCGTTTCTGTGTGTT	alt_6034_new	141	139	148	135	160	108	131	116	137	109
GTAGCCATACGTTCGC	alt_6034_new	11	10	6	15	21	3	12	14	13	15
GAGTTTTTCGAGGTGA	alt_6034_new	7	13	13	12	7	19	5	6	11	6
CAGTGCTTGGCATGTT	alt_6034_new	0	0	0	0	0	0	0	0	0	0
GTTAGCGTCTCCAATC	alt_6034_new	0	0	0	0	0	0	0	0	0	0
TTTTTCTCATTTTGAA	alt_6034_new	39	49	53	37	43	47	50	47	39	36
AGTAGCAGGCGTGCTA	alt_6034_new	56	40	58	49	49	54	56	41	41	36
GGGGAAATCCTGCCGG	alt_6034_new	0	0	0	0	0	0	0	0	0	0
CTCCTTTGATAGCAAT	alt_6034_new	80	97	81	65	97	64	70	79	99	48
CATCATAACCCGTCAC	alt_6034_new	8	13	12	4	10	8	9	12	18	5
GGAAGCGGCATTAGAT	alt_6034_new	46	41	56	57	45	38	34	51	46	42
GCTTGGATTACCTTGG	alt_6034_new	23	29	21	23	32	29	40	16	33	13
GTCTCCGCCACCAACT	alt_6034_new	27	17	30	21	13	14	17	12	19	16
CGCTTCTAGGCCGTCA	alt_6034_new	8	4	8	3	3	2	9	5	7	5
TATTCATCGCAACGGG	alt_6034_new	0	0	0	0	0	0	0	0	0	0
ATAGGGCAGCACGGAT	alt_6034_new	23	24	36	29	29	29	27	29	27	27
TACAACATAGGCATAA	alt_6034_new	0	0	0	0	0	0	0	0	0	0
GCCTCTTAACTTTATT	alt_6034_new	2	1	2	0	2	2	1	1	1	1
TCCTCGATTTTCAAAT	alt_6034_new	41	32	55	35	39	39	38	46	33	31
TGTTTCGTGCGTACAC	alt_6034_new	46	63	55	38	70	38	52	41	36	32
GCTCTCAGCAAGGCAC	alt_6034_new	8	4	9	10	12	2	7	5	6	7
CCTTTCGCTAGTTTTG	alt_6034_new	9	28	22	15	25	20	30	19	20	15
ATTTACTCCCATGTCT	alt_6034_new	21	20	12	17	23	12	21	9	30	14
CGGGTTCCGGAACAAC	alt_3356_fdr	245	101	305	250	73	249	85	213	106	227
ACTTGTCATCCCAGAT	alt_3356_fdr	112	30	137	120	37	87	31	88	30	74
CCAGTAGCATCGCCTT	alt_3356_fdr	7	12	6	18	16	9	13	12	13	4
AGACGCTATCATCCCT	alt_3356_fdr	37	23	58	42	17	41	16	52	19	47
GGAACCGCTGCCGTCT	alt_3356_fdr	104	35	135	112	35	101	47	90	47	77
CCTCAACACTAATTCT	alt_3356_fdr	39	19	44	45	28	41	21	37	17	30
GTTGGTTTGGAGACGT	alt_3356_fdr	100	53	110	119	40	96	43	94	38	106
TTCCCGGGTCAGTACC	alt_3356_fdr	141	104	220	183	126	146	110	200	121	170
TCGTCCCTGAGATCCT	alt_3356_fdr	119	49	134	118	33	102	49	100	37	122
GTACGCAATTTCATGA	alt_3356_fdr	30	2	27	21	9	26	11	37	17	26
ACTGGTATGGATAATC	alt_3356_fdr	66	21	84	48	27	64	37	66	28	68
CGTGGTTTCCGTCGTA	alt_3356_fdr	130	51	174	175	70	132	60	130	73	121
CGTCAGTAACTTCGCT	alt_3356_fdr	25	6	9	18	6	9	4	17	11	11
CTGGGGGTGGTTGGCT	alt_3356_fdr	392	187	550	423	174	423	165	431	189	422
AATGCTTTCTCGTTTC	alt_3356_fdr	406	131	524	458	131	396	140	414	130	365
AGAAGTGGTCCCTGTC	alt_3356_fdr	4	6	10	19	1	7	1	8	1	3
TGCTGACGAGTCATAC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTACTCAATGTGC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGCTAGCCATGGT	alt_3356_fdr	149	63	169	149	67	124	57	142	66	136
TCATAGATCTCCTATG	alt_3356_fdr	16	6	23	18	9	18	7	15	10	12
GGACTTGATGCTCCTA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTACCTTTCGCTA	alt_3356_fdr	75	26	83	93	29	69	31	91	29	78
TGGGGTTTTACTGGAT	alt_3356_fdr	39	12	59	41	23	42	21	39	13	38
ATCTGAAGTGAGGTCT	alt_3356_fdr	58	11	86	80	26	43	23	59	11	75
AAGGGTTTCCACATAT	alt_3356_fdr	142	43	139	120	56	122	42	126	42	100
TCCAATATTATCTTTT	alt_3356_fdr	576	164	668	575	191	510	197	497	183	525
GTGTTCCGCACTTAGT	alt_3356_fdr	129	59	136	124	55	112	57	136	42	118
TTCTGCTGAGACAACA	alt_3356_fdr	14	9	17	33	6	28	10	16	10	24
CTGCTCCGCATTTCGC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTGTCTAACGTCG	alt_3356_fdr	185	79	255	219	69	208	74	187	91	182
GACAACCTCTAGTTGC	alt_3356_fdr	27	10	59	40	21	42	15	32	10	41
GTTTGACGGATGCATA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGATTATATGGAC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TTGCACTAATAGCTGT	alt_3356_fdr	103	39	119	109	40	70	41	103	43	106
ATATGAGTATATAGCA	alt_3356_fdr	6	4	5	1	1	6	4	10	3	1
GTGAATTCTGTTTATG	alt_3356_fdr	51	10	75	67	23	55	14	61	32	57
TATGGTTACACTTAGT	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
GTATGAAATTCTGGGG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
GGCACGAGCTGGGTTG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
ATCCGGTGATAATTAC	alt_3356_fdr	125	58	107	109	62	120	57	87	66	89
TCAGGTCGAAAAACTA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
AATACTTATTGCCCAA	alt_3356_fdr	15	7	27	35	9	16	9	26	7	15
TCTCGTGCATGTCCGG	alt_3356_fdr	158	70	201	190	47	136	61	155	43	160
CTGCCGATTTCATTAT	alt_3356_fdr	123	38	153	120	35	104	44	118	44	110
TTATTGATTCGCCTTG	alt_3356_fdr	22	5	27	23	6	19	5	30	13	25
CGCGGGCGGTTAGGTG	alt_3356_fdr	261	117	287	269	95	249	80	240	135	239
TATGAGCCGCGATCAC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTATACTTAGACG	alt_3356_fdr	66	19	84	56	31	59	25	41	36	59
GGTTAAGCTCTTTTTA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGCTACTGGGGCCGCT	alt_3356_fdr	27	7	28	21	14	22	13	25	14	20
TGGGATAACTGTAGCC	alt_3356_fdr	10	5	15	9	7	11	2	4	0	8
TTTCTGTGTCCGAGTG	alt_3356_fdr	54	26	47	37	19	54	26	57	17	56
TACTACTCCATCTGCG	alt_3356_fdr	2	5	6	6	3	5	5	4	7	6
TCAGCAAAGGCGCCAG	alt_3356_fdr	404	117	445	391	156	397	124	367	155	396
TCGTCAACGACAACCA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGCAGTACAATGT	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
GACTGACTTCTTTTTA	alt_3356_fdr	99	47	98	105	42	95	39	105	30	63
GACTCAGTGCCCCCCC	alt_3356_fdr	0	0	0	0	0	0	0	1	0	0
ACGCCATAACTTTTGG	alt_3356_fdr	138	69	155	148	71	168	60	158	80	144
CCTTGACATTATGGTA	alt_3356_fdr	16	5	26	17	6	27	8	22	7	7
ATAGGGAGGTCTGGTT	alt_3356_fdr	47	16	60	44	12	26	9	46	19	50
TTCACGGTATATTTGC	alt_3356_fdr	73	24	91	64	27	54	25	64	27	45
GCGATTGTATTCCGAG	alt_3356_fdr	76	41	86	83	38	75	35	57	35	71
TACAGGATCCAGTTAA	alt_3356_fdr	234	64	262	263	82	231	99	223	93	242
ATCCATGTCGCACTTC	alt_3356_fdr	75	23	100	71	32	81	23	78	24	70
GGATAAGGGACACAGT	alt_3356_fdr	41	17	44	38	11	32	18	35	14	38
GAATTTAGTATAGTTC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TGAAACATTAGTTGTG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CTCCAAATATCACCGA	alt_3356_fdr	135	34	140	111	54	118	69	114	49	113
CGAGGCGCCTTTTGCT	alt_3356_fdr	70	19	83	70	18	60	34	54	25	59
ATTTCACTGTAAAATG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCCTTCCGCGGCA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGATTCTCGACGGGAT	alt_3356_fdr	49	24	46	47	22	51	21	41	15	53
GACTCAGTGACCCCCC	alt_3356_fdr	33	9	48	34	17	28	7	43	16	32
GTGTGTGTGACACTGG	alt_3356_fdr	8	3	9	6	1	4	3	2	5	5
ATCTCAACCGGGAACC	alt_3356_fdr	38	14	61	49	13	35	16	43	19	35
GTTTCCGAAGCGCTTC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
AATGTCGAAGAGGAAC	alt_3356_fdr	26	22	51	30	10	31	17	29	15	37
TTTCCTGTGTTGAACT	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
AACCCAGCCCACCGCC	alt_3356_fdr	116	50	116	100	39	96	44	93	37	78
TCTGGCGAACTATGTT	alt_3356_fdr	31	11	26	20	10	21	5	22	5	21
TTTCGTTCCCTCGATC	alt_3356_fdr	72	21	78	75	31	76	35	64	28	63
ATGATCCCTAGGATAG	alt_3356_fdr	51	18	52	51	16	40	24	48	10	26
CTCGACTTCGTGGGTC	alt_3356_fdr	25	16	32	29	10	28	17	35	28	28
GATTTAACCTTTATTT	alt_3356_fdr	86	43	119	114	48	97	40	89	32	74
TCTGCTTTCTCTCCGG	alt_3356_fdr	18	7	19	9	3	13	8	17	4	13
TTCATATCTTGGACTG	alt_3356_fdr	24	12	29	24	11	27	6	16	15	14
ATGGTAAGTCTTTCTC	alt_3356_fdr	238	66	279	266	79	226	82	207	98	198
GAAATGCAGCTATGGA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TGGCACCTGCCATATA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCGACCAATAATG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTCATATTGCTTA	alt_3356_fdr	247	81	279	259	71	241	71	213	87	210
TCAACGGGAGGCTCAA	alt_3356_fdr	80	29	79	88	32	67	31	69	32	66
TTGATCAAACGCATAC	alt_3356_fdr	87	41	104	93	27	78	43	70	35	74
TCTCGAGAGACGCTTC	alt_3356_fdr	191	66	211	200	73	181	72	177	76	150
TGGCGTATAATACAAG	alt_3356_fdr	6	0	5	6	2	11	2	6	7	7
CTGTGTTGGTTCTTTT	alt_3356_fdr	483	150	636	528	137	543	156	478	169	457
GTACATCGCTTTAGGA	alt_3356_fdr	36	15	62	56	10	30	21	38	23	37
CGGTTGCCGGGCACTT	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TTGAATCGAACATCGG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TATAGAGGCCACTTTG	alt_3356_fdr	152	69	210	171	46	145	62	166	68	149
TGTGCTCGGTTTATGC	alt_3356_fdr	123	43	155	139	53	107	61	130	70	99
TGGTGCGTATGCGTGC	alt_3356_fdr	137	50	151	151	55	131	48	108	59	111
TTGGAGCCTTAAAATC	alt_3356_fdr	41	14	47	34	5	40	16	23	16	41
CACGCGGATAGGTCCT	alt_3356_fdr	67	21	100	74	33	79	32	75	28	55
ACTATTCCGCAGTTAA	alt_3356_fdr	94	31	87	112	37	117	30	97	50	92
CACTAATCGGAAATTA	alt_3356_fdr	35	19	38	30	21	25	9	29	16	33
CCTCCTCGTCATCTGG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CATCTTTTAACGACCA	alt_3356_fdr	14	8	18	14	9	16	5	13	3	19
TATAGAGTCCACTTTG	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
CGACGCAGTGTCCCGA	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGCCAGCTTGCTT	alt_3356_fdr	129	62	171	160	58	145	50	143	66	124
TAGGTCACTTCGTTAC	alt_3356_fdr	12	8	15	19	4	20	1	17	6	13
GTTATAATCGGATCTC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
TCCATGCTCCATTCGT	alt_3356_fdr	12	14	24	23	5	21	1	22	11	10
TCTTGTTAGCCGCCAT	alt_3356_fdr	2	0	3	2	0	2	2	0	0	2
GGTGATGTCTCTTTTC	alt_3356_fdr	0	0	0	0	0	0	0	0	0	0
GTACACTCACGGCCCT	ref_1709_fdr	5	43	6	4	47	4	43	5	47	5
GAAATGGACGGGCTCT	ref_1709_fdr	56	36	54	36	30	42	56	36	55	45
TGTTCCCCGAAGCGGC	ref_1709_fdr	46	58	57	59	51	36	65	41	71	48
ATCGCCCTTACGTTTT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CCGTCAATTCCCCACT	ref_1709_fdr	4	14	14	6	8	8	15	9	16	5
TGCCTAATACTTTGTC	ref_1709_fdr	90	119	84	103	95	75	121	71	124	65
GTTTTTAATATGCCAT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCTAAGGGGGCGC	ref_1709_fdr	50	34	67	56	69	46	70	32	56	38
AACTTTTCAATGCGGG	ref_1709_fdr	30	34	28	26	39	20	26	32	28	23
GACTCTGGCAGGGCAT	ref_1709_fdr	12	15	10	15	24	4	4	6	14	4
CACCCTAATTCGTCCC	ref_1709_fdr	3	7	7	9	4	4	12	1	7	4
GTCTTGTTAATTTGGA	ref_1709_fdr	13	19	23	17	18	15	21	13	11	16
TGCCGTAGACTCGCTT	ref_1709_fdr	78	81	60	49	69	60	94	52	79	50
TATGCGTTTTCTATAA	ref_1709_fdr	23	19	20	19	21	12	13	10	25	17
AGTTCAGACCACAGTA	ref_1709_fdr	15	21	26	21	29	22	25	24	29	18
ATCTTGTTGAAACGGC	ref_1709_fdr	59	54	68	54	70	55	88	66	65	59
AGGGCGCATGTTAATT	ref_1709_fdr	65	47	52	47	48	36	50	41	57	42
TCACAGATGTCTGGGC	ref_1709_fdr	5	11	2	12	4	10	8	16	6	23
GCCACCAGCCTATGGC	ref_1709_fdr	2	0	1	0	0	3	0	0	0	0
ATGTCTCCGTGACATA	ref_1709_fdr	31	19	34	27	38	16	35	27	38	22
AGTGTTTTAGTCTACC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
AATCGTTGTCAATAAG	ref_1709_fdr	15	16	25	22	23	23	20	10	23	25
GCTTACCTGGTCTGAG	ref_1709_fdr	0	7	0	1	5	1	10	0	12	0
ATTGCCGTCACCACGC	ref_1709_fdr	31	37	45	54	38	38	50	47	43	41
GAGATGTTGATGGATT	ref_1709_fdr	2	2	11	3	10	11	10	7	13	9
CTCGTTATAGAAAATT	ref_1709_fdr	9	10	6	4	5	7	8	5	9	8
CAATACCTCCTCATTA	ref_1709_fdr	66	82	63	53	76	52	97	49	93	48
GTCTTACAGCAGCGTC	ref_1709_fdr	112	118	134	110	135	101	117	81	156	104
TTTCTTCCAGGTATGT	ref_1709_fdr	109	81	140	103	96	118	100	92	100	91
GTACTGATAGGGGCTG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TATCCCTCGGGAACTG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CTTCAAACTTCATCAG	ref_1709_fdr	30	25	36	25	30	29	19	33	21	26
AGACCAAGTCACTCAC	ref_1709_fdr	7	9	6	8	12	4	6	2	8	2
TTGTATGTTGTTTATT	ref_1709_fdr	73	65	104	78	55	73	85	89	69	87
GTTAGGTCCCCCCGCA	ref_1709_fdr	47	37	38	48	56	41	50	33	56	33
TGCTAACGTTTAATGC	ref_1709_fdr	4	2	8	6	2	2	4	1	1	3
TGTGGGGTTGGTCCTG	ref_1709_fdr	77	68	70	51	62	60	73	55	71	60
TTAGATCTTTTCCCTG	ref_1709_fdr	34	40	45	37	40	37	27	28	44	35
TCTATGTTTTTTTTTT	ref_1709_fdr	56	68	86	74	74	69	61	52	98	59
GGATGATAGCGAAAGT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCTGTACGAAGGT	ref_1709_fdr	7	15	12	9	12	25	19	12	13	14
TGGTCGAGGGAATGGC	ref_1709_fdr	22	27	27	27	15	17	22	18	31	9
CCGACCCCTCGCAGGA	ref_1709_fdr	168	231	217	158	249	136	277	143	245	147
TTCCTTTTTACATGAT	ref_1709_fdr	0	1	3	1	1	1	1	1	0	2
CTGTACTTGCACATGA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTTTGGTATTTT	ref_1709_fdr	41	33	46	22	36	37	28	32	37	36
TCTATATTTTGCTTTC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
ATAAATTACGCTATCT	ref_1709_fdr	111	126	164	156	119	131	152	124	140	119
ACATTCAGGTGATGCA	ref_1709_fdr	24	22	49	27	45	22	50	32	47	36
CTTTGTGGGCTGTACG	ref_1709_fdr	76	113	104	116	123	78	106	113	122	74
TTCAACCTCAAAATAC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTTTTGGATATGG	ref_1709_fdr	94	157	140	117	163	91	148	115	148	111
AGTTCGATAATCAGTC	ref_1709_fdr	69	86	70	75	93	81	75	66	95	59
TTAATTGGGAACGATG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGAGACCGGGCAA	ref_1709_fdr	3	1	1	1	4	0	2	0	0	0
CTGATTTTCTGTCTAT	ref_1709_fdr	15	19	20	14	16	15	11	7	24	13
ATTAGCCCATGGGAAG	ref_1709_fdr	45	37	51	41	48	30	54	24	44	31
ACCCTATCCCGGAAGC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTTAAAATATCAA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CGACAACCGACAACTC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCTTTAACAAGAG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCCATCGAGTGTG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CTAACTTAGAAACTTC	ref_1709_fdr	38	60	66	45	47	35	56	47	50	47
CGGCTACCGCAAAGGC	ref_1709_fdr	1	1	0	1	4	0	4	1	7	1
TTCATGTGTGAATAAA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GGAACTTTGGATACGT	ref_1709_fdr	23	27	21	11	27	15	30	10	32	20
GTTAGACGATGGACTG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAGAAATCAGGAC	ref_1709_fdr	4	4	6	1	5	2	5	3	3	3
TGTTGGCGTCCCCCAC	ref_1709_fdr	20	16	38	20	23	14	16	16	18	21
GCACTCACGTAATCTC	ref_1709_fdr	56	55	50	52	67	56	60	55	51	54
TCAGATTTTACCTGCG	ref_1709_fdr	54	72	61	57	76	50	60	49	80	50
GGATTTATCCTTCGTG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GTATGTTTTCATCTAT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CCATTCGTTTGGATTC	ref_1709_fdr	6	5	10	10	15	18	17	5	14	9
GCAGGCGCCCGTTGGT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TTACGATTTCACCCCG	ref_1709_fdr	10	18	5	8	11	7	17	5	13	12
GCATGGATACATAGTA	ref_1709_fdr	3	10	6	5	8	5	10	8	8	6
GAACCTGTTTAGACCG	ref_1709_fdr	41	42	35	19	48	22	57	26	47	26
TCTACGATCCTCCTGA	ref_1709_fdr	10	19	6	8	17	8	9	17	18	12
TACACACGGCCCAGAA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGTTTTGTTTTTA	ref_1709_fdr	82	95	97	70	76	67	76	81	95	62
AATGTGGTAGCTACGT	ref_1709_fdr	13	15	19	14	21	15	23	17	16	17
GTATGGCCGAACCGAT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTAGGGGGCAAAT	ref_1709_fdr	35	22	38	20	26	36	43	27	21	21
TTCGTACCGATCACAG	ref_1709_fdr	14	14	12	13	16	9	27	21	24	7
TCGTAGGTGCGTGGAG	ref_1709_fdr	13	20	29	16	12	21	23	19	15	20
CTTCCTTGCCTCGCGG	ref_1709_fdr	31	38	28	37	31	21	34	29	31	22
AAGCTTCCGGTGCCGT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
ATCTCATCCGTGAGGC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
ATACCCCTCACTCCTA	ref_1709_fdr	15	18	23	20	24	25	22	25	26	16
TCGCAATAGCGTTCGT	ref_1709_fdr	48	96	93	74	73	71	75	68	78	64
CTCTACCAATGAGGTT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TACCCCCGGCCCAGAA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
ATATAGACTACTCCGC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTTCCTCTGTAG	ref_1709_fdr	8	10	10	5	8	6	14	6	8	6
ATCCTTCCGCCATAGG	ref_1709_fdr	28	33	44	32	36	33	28	19	30	31
CTTGCGAGATCTTTGC	ref_1709_fdr	91	93	134	95	104	96	105	96	104	98
AATGCGCGATATATGG	ref_1709_fdr	46	70	74	54	50	39	46	46	68	41
CCCACCTCAACCTATT	ref_1709_fdr	0	2	0	0	5	2	3	0	1	1
GAGGTGACGATCCGGA	ref_1709_fdr	28	19	36	31	37	33	37	28	39	39
TAAAGGGATATATCAG	ref_1709_fdr	10	5	10	6	4	8	6	8	10	6
CGAGACGTCAGCGTAA	ref_1709_fdr	44	41	48	44	32	24	34	55	40	38
ACCATTGCTCACCGAA	ref_1709_fdr	34	50	44	42	45	40	57	31	72	50
CCGTCCTAAGATAAGG	ref_1709_fdr	221	253	263	230	270	207	327	227	295	224
CGGGGAGTATAGGTTC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TGCACTAATCCAATAA	ref_1709_fdr	5	4	7	5	4	4	6	0	8	4
CTATTCCAGCATGAGG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GATTTCCTCCAGCAGT	ref_1709_fdr	172	140	225	196	139	185	143	162	150	173
CTCAGCTATACGTCTA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TGCAATTGTAAGTCGT	ref_1709_fdr	108	149	146	120	143	135	177	137	173	84
CACGTTAGTATCCCAC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTGGACGGGGCTC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TACGTGGGCAGGAATT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGACAGACCCCGG	ref_1709_fdr	27	24	31	22	16	18	21	15	23	12
CTTCAGATTTCATGTG	ref_1709_fdr	75	72	76	61	68	51	78	43	73	59
GAGGTGACAGTGTAAA	ref_1709_fdr	28	37	39	36	38	32	48	26	46	33
GTTGTATAGCTTTCTG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
CGCACGGCCGTCCTAG	ref_1709_fdr	34	62	60	49	59	34	44	45	59	35
GTAGGGTGAAGAGACT	ref_1709_fdr	8	23	33	18	27	10	22	5	27	11
CAATCCCGGGCTGTAC	ref_1709_fdr	38	76	49	30	63	29	68	29	74	27
GCACTACCCTCAGCCT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCTTTGTAAGGGA	ref_1709_fdr	8	17	14	6	16	16	24	10	12	6
GTATTTTCGTTATTCT	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
AATCCAGGTATTTTTC	ref_1709_fdr	3	5	3	3	1	7	8	4	8	2
TGCCCCTATGATGCTT	ref_1709_fdr	26	35	25	34	45	17	40	23	39	24
TATAACGGGTCTATGA	ref_1709_fdr	17	26	19	33	33	19	24	24	33	24
CTCATCGTATCCTTTG	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGGGCTGCGTGAA	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GGTTAAGGAGTTCTAT	ref_1709_fdr	16	13	25	12	9	13	14	19	14	13
ATGTAGATTGCGGCGT	ref_1709_fdr	26	21	28	27	23	22	23	27	21	26
GGTTTTATGCAGAACC	ref_1709_fdr	0	0	0	0	0	0	0	0	0	0
GATGTTCGCGTTTTCT	ref_4832_upstream	348	171	386	361	164	336	139	328	132	264
TGGCATTCGGTGTTAT	ref_4832_upstream	19	21	33	14	15	24	19	21	24	26
GGCAAGTTAAATTTTG	ref_4832_upstream	223	120	280	228	126	218	115	222	129	178
CGGGTCTAACACAGTT	ref_4832_upstream	24	12	38	24	12	20	23	25	17	28
CTCCGCCAGACATTAG	ref_4832_upstream	44	29	78	33	31	52	37	63	36	43
TTCTGACTTCCGACCT	ref_4832_upstream	120	79	141	150	82	104	73	107	96	125
GTGGCCGCTCTAGCCA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATCCACGTCCGAATTT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATACATTTTCGGCTAC	ref_4832_upstream	56	51	65	57	44	49	52	41	43	40
GTTTAGCCTGCTCAAC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
GCAGCTCCCATCCTTC	ref_4832_upstream	92	50	81	107	57	88	61	79	69	62
CGTCGGGTCCCCCTTA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGCCAACCTGGAT	ref_4832_upstream	118	89	140	114	94	136	86	111	87	102
GCCTCTTCATCTCTGG	ref_4832_upstream	90	74	122	91	70	89	69	66	62	86
ATTCCTACCCCTTCGT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATATATACTGTG	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTACTACCTGTTG	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ACACTGTAACGCACCT	ref_4832_upstream	226	148	240	187	151	199	130	184	150	197
CAGAACCGGACCTGTA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TGTGAATGTTCATTAT	ref_4832_upstream	2	1	0	3	0	2	3	2	0	4
GTTTGAGGGGCCTTAT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCAGTTCCGGCTG	ref_4832_upstream	279	163	312	270	200	249	193	271	180	242
CTGCGTTATCCACTGC	ref_4832_upstream	145	82	187	137	94	131	109	107	86	137
GTGTCCGGATGTGTAG	ref_4832_upstream	99	52	115	84	65	92	73	103	61	107
TGATGTTCCTGGCATT	ref_4832_upstream	76	54	64	60	48	74	49	65	36	65
GTCCCGTCGCTTGTAG	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TACCGCTTGTGTATCC	alt_4832_upstream	59	87	83	81	87	53	95	71	105	57
TGGTTGTATATGAAGG	ref_4832_upstream	110	63	94	115	70	89	66	113	70	73
GGGTTCTGTGATGCAT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGGAATTCTATCC	ref_4832_upstream	19	10	25	18	10	15	8	16	5	21
AGGTTTCCACTTCTTG	ref_4832_upstream	60	28	56	64	33	61	33	56	34	60
CGATCCGTCTCTTGCC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
AATGAGAGTCCCATTT	alt_4832_upstream	258	146	307	240	166	223	187	269	152	253
CTTGCTGTTCTCGTGG	ref_4832_upstream	12	9	14	11	7	21	8	8	12	13
GTCATTATTGTAATAC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCATAGGAACACTTAT	ref_4832_upstream	17	9	30	28	3	16	11	16	15	20
CTGGTCTGCCCCCCTA	ref_4832_upstream	35	19	41	49	28	44	25	51	21	31
CTTCTCGCCCAAGCAG	ref_4832_upstream	140	115	182	122	91	119	122	156	119	130
TGGTTTTCGGGTCTTT	ref_4832_upstream	1	1	0	0	0	0	0	0	0	2
ATTTCGGCACTGGTCG	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTACTATGAGAGG	ref_4832_upstream	107	72	92	85	73	82	65	103	85	83
GAGTGTTTCACGACCC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
AAACATTCGTTCTATG	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCCACAAGGCCTGTGG	ref_4832_upstream	99	67	115	88	60	82	54	59	50	74
TGGCTCTGCTGGTTTC	ref_4832_upstream	54	23	51	41	26	45	27	37	33	34
CTGACCCGCACGGATT	ref_4832_upstream	4	7	10	13	0	7	5	7	3	9
CGTCGGGTCCGCCAAT	ref_4832_upstream	20	14	24	24	10	21	10	21	9	30
GGATGTAGTAACCCCC	alt_4832_upstream	71	43	69	57	29	67	45	66	38	52
TCAATGTCTGATCCCA	ref_4832_upstream	122	68	167	137	72	136	83	100	88	121
GCATGCTGTTGTAGGA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
GGATCTAATGGTGTAT	ref_4832_upstream	16	3	23	17	8	14	13	18	14	17
AGATGCCTGAAGGGAA	ref_4832_upstream	22	8	22	13	6	17	8	16	5	9
GTCCCGTCTCATTCAT	ref_4832_upstream	28	26	33	31	26	26	25	30	27	15
GTTGCCCATCGAAGTC	ref_4832_upstream	403	239	481	402	267	402	247	391	264	344
CCGCGGTCTGGGATAG	ref_4832_upstream	5	7	19	14	6	9	9	5	4	8
CTCTGTTTAAATTGTG	ref_4832_upstream	18	10	29	24	11	15	12	14	7	19
ATATTGATTGAACGGG	ref_4832_upstream	62	40	78	80	35	59	43	43	38	60
ATAGCTCGTTCTTAGG	ref_4832_upstream	47	39	72	73	30	62	25	70	34	65
GTTTTAGCCTAATCTT	alt_4832_upstream	55	76	99	64	69	70	84	57	96	55
TTGGATCGGGTTCTTC	ref_4832_upstream	10	6	11	8	3	6	7	3	5	3
CCGAGGTGGCAATGGT	ref_4832_upstream	2	7	8	2	4	1	5	1	2	1
AACTAGCTTAACACTG	ref_4832_upstream	360	208	437	378	220	351	234	341	199	366
CACTATATTTCCGTTT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTAGTGGCAACCT	ref_4832_upstream	15	14	16	14	10	12	7	8	13	9
GGGAGTCGTTATCTAC	ref_4832_upstream	238	117	269	231	132	210	123	172	138	189
ATCTGGTGTTGTGTTT	ref_4832_upstream	152	100	204	185	110	155	112	161	115	131
TCTTCTGTGACAATTC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTAATAAGTTTGA	ref_4832_upstream	14	12	12	8	8	12	12	13	10	11
CGTTCGTGTGCATGTG	ref_4832_upstream	130	119	168	129	103	133	108	130	115	110
GGTTCTAACCGTGCCC	ref_4832_upstream	19	21	22	24	24	17	20	19	24	12
CAGGTTAACAGCTCCC	ref_4832_upstream	288	281	398	344	272	311	273	295	273	302
GAGTATCGGCTGTAAT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGTCCGATCGATG	ref_4832_upstream	191	135	218	172	142	158	137	154	127	191
AACTTTATCGGAGATA	ref_4832_upstream	66	22	81	52	37	56	34	52	28	31
AGCACCGCATTTTAAT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGGCTCGCGTCCC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTATGGTTACCCC	ref_4832_upstream	180	96	234	190	109	166	89	144	107	128
TCAGGGTTGATTCGCG	ref_4832_upstream	115	81	158	150	95	113	98	118	95	106
ATGCGCCCGATCCATG	ref_4832_upstream	53	21	56	53	34	48	24	56	35	42
CTCATGTTGTTGGGCT	ref_4832_upstream	21	8	10	10	11	17	18	6	10	8
TATTTCTATAATAACT	ref_4832_upstream	182	79	209	191	80	160	105	179	89	156
TTTATTCTATAGGCTT	ref_4832_upstream	95	48	118	84	41	84	61	69	54	97
TCAATTGGGTCTACTT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCTGGTACATCGT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGGGCGGCAACTT	ref_4832_upstream	325	163	357	317	193	272	192	257	181	254
ACGCTAGCGTGGGGCG	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TTTACGCATTATTTCC	ref_4832_upstream	4	1	5	4	3	2	1	3	1	1
AACTTTTAGTATATGT	ref_4832_upstream	10	17	26	11	9	19	7	11	11	10
CCGACTCACGCCTTTA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCCAATTCACTCTCAT	ref_4832_upstream	29	22	26	28	30	29	33	21	27	18
GCCTGTGCAACTCAGC	alt_4832_upstream	78	112	113	129	120	84	123	105	100	82
TCATCAAGTCGTGATG	ref_4832_upstream	235	141	235	230	135	200	151	209	117	210
CTCGACGCAGTGCAGC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
CCCGGTCTCCGGTGGT	ref_4832_upstream	33	20	27	36	37	22	30	33	47	27
GCGCGCATACGCATTT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGTAGTCGTATT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
AACTTCCGGTTTTCAA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGGCCGTAGTACG	ref_4832_upstream	42	26	41	26	25	30	32	26	29	27
TCCGACTTTCGAAAGG	ref_4832_upstream	61	45	72	71	49	45	20	66	39	61
TTCGGATTACCATGCC	ref_4832_upstream	187	127	222	173	109	175	123	173	146	168
TGTTGTATCCCTATGC	ref_4832_upstream	30	25	37	36	27	38	23	36	15	41
ATGGGACTATATCGCG	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
GCACACCCCGAGATCG	ref_4832_upstream	0	0	1	0	0	2	3	2	2	1
TCTTTACGGCTTATCC	ref_4832_upstream	21	6	17	17	14	16	15	17	20	20
CCGTCGAATAGAACAT	ref_4832_upstream	123	73	120	112	88	117	77	120	84	91
TCGAACTCATGCGATA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCGATGTCGACGATAT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
GAACGCCGTTTTTTCG	ref_4832_upstream	62	32	65	42	34	51	40	56	27	50
GCTCTCTGGGGCTTTT	ref_4832_upstream	79	38	104	68	53	73	62	73	39	42
CTATGCAGCCTACCAT	ref_4832_upstream	45	40	55	54	38	44	31	53	30	57
AACTGTAACCGAATGT	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATACATTCGTTCTATG	ref_4832_upstream	470	262	491	385	252	435	274	351	305	403
CTCCGGCGCTGCTCTG	ref_4832_upstream	23	13	19	28	16	12	12	21	14	15
AACACCCTTCTTACCA	alt_4832_upstream	51	55	70	57	52	56	46	47	44	61
GCCCCGCTTTATTTGG	ref_4832_upstream	66	50	98	78	40	61	40	55	45	60
GTGGTTATGCCCATGT	ref_4832_upstream	35	16	58	29	19	31	21	25	36	29
TCTTATATTACTACTA	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
AACTACTAATTCCGGG	ref_4832_upstream	39	34	54	47	28	45	21	41	28	35
GTTAAGTATTGTCGAG	ref_4832_upstream	7	1	5	4	1	5	1	9	4	4
CAGCAATCAATGGCCG	ref_4832_upstream	223	94	273	208	108	198	84	192	93	201
CCCGCCACCATGGGCA	ref_4832_upstream	38	16	36	22	19	32	17	39	33	29
CGGGACCCCAAGCTGC	ref_4832_upstream	83	44	134	105	35	94	43	94	69	92
ATTTCTAGTTCTGCCC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCCAACTGCTTTTTCG	ref_4832_upstream	47	25	40	40	41	47	41	37	30	35
AGCGCCCTCATTTCGC	ref_4832_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCTGTTTCATCCG	ref_4832_upstream	23	8	25	15	6	9	9	13	10	18
TGTGTCTGGTTTTGAT	ref_4832_upstream	13	10	24	12	13	15	15	44	10	26
GTATTCCTCTTCGTTG	ref_4832_upstream	52	20	43	34	23	40	17	50	31	58
GGCGTTTTGAATATTT	ref_4832_upstream	170	127	229	181	120	164	124	192	139	166
CCCTATAGCCCTGGAG	ref_4832_upstream	204	85	242	192	110	185	110	201	111	197
CCGTTTCTTTGAACCA	ref_4832_upstream	426	254	477	361	251	386	262	384	247	379
ATCTGCCTTTACAATA	ref_2573_missing	67	90	87	61	105	62	92	61	115	54
GCCCCAGGTATCAAGG	ref_2573_missing	33	46	38	34	65	33	50	27	65	35
TTGGCGAGGATATACT	ref_2573_missing	19	39	27	19	33	27	31	21	27	19
CTCGGTTACCTAGAAC	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
TGAACGTCGTAGTTGG	ref_2573_missing	17	15	26	14	22	24	19	12	17	15
GGGAGTGACCAGCGGC	ref_2573_missing	46	67	68	63	67	66	78	52	97	68
ACGGTATATAGACTTG	ref_2573_missing	9	16	13	18	17	21	22	8	20	10
ACAAATATCCCCTCTT	ref_2573_missing	34	38	34	37	42	36	52	28	49	38
AGCAACCGGCTATGCG	ref_2573_missing	46	221	67	60	240	65	222	63	250	37
CCTTAACTTCCGTTAC	ref_2573_missing	1	4	8	3	8	2	9	4	7	12
CCGTTATGCGCTGTGG	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
GAAATATGAAGTGACA	ref_2573_missing	46	63	56	56	75	67	61	49	58	50
TGGCGCTTTCGCTGGT	ref_2573_missing	172	230	231	211	202	194	245	182	254	173
TCGTGTTGCAATCCTG	ref_2573_missing	24	23	21	19	24	21	30	10	30	16
TAAGTGCACTAATTGC	ref_2573_missing	17	12	13	20	11	13	24	13	14	5
CACCGGTGTCCAGAAG	ref_2573_missing	9	18	9	9	21	5	17	9	23	5
TCCGTTTGTATGACCG	ref_2573_missing	7	4	15	4	10	5	10	8	7	3
CTCATTCGCCGGAGCA	ref_2573_missing	5	8	5	4	5	5	12	3	9	8
GTTTTTGATAGGTATT	ref_2573_missing	25	47	28	17	22	23	47	27	32	29
CATACCGCTCTTACTA	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
TAGTGAGTAGCGGGAG	ref_2573_missing	18	20	18	9	19	16	20	14	32	17
TCATCTGTGTCAATAG	ref_2573_missing	74	90	77	74	114	60	105	66	100	66
CTCCATCAGCAGGGGC	ref_2573_missing	26	37	28	26	36	28	29	33	34	28
TCTCTGACGTTCGGAA	ref_2573_missing	18	32	41	16	38	24	45	21	28	9
CTTTTATAGCGTGGGA	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
TGGCTTTCCTCATTCT	ref_2573_missing	6	6	2	4	6	4	3	5	0	1
TACGGTAATTGTAGCG	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
TAATATCTTTCGGCAA	ref_2573_missing	8	9	10	17	14	12	11	6	11	8
GCATCTGCGTTATTCA	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
TCAAGGATAGAGCAGC	ref_2573_missing	24	33	36	30	48	33	65	40	36	22
TAAAAGATGCCAACGA	ref_2573_missing	58	43	60	54	36	58	45	30	50	47
AGGACCACTTTTTGTT	ref_2573_missing	24	30	26	32	61	29	40	18	43	17
TCAGCGTGGCGACTGA	ref_2573_missing	32	50	48	37	64	36	54	54	56	45
TGACATTGGCTTTCTC	ref_2573_missing	7	10	8	10	17	11	16	6	21	8
CGTTGCAGAATGTTTG	ref_2573_missing	0	0	0	0	0	0	0	0	0	0
TGATTCATGTTTTACC	ref_2573_missing	9	17	18	11	20	16	11	12	16	11
CCGCCTGACCACAAGG	ref_2573_missing	9	7	5	1	6	8	11	4	12	3
ATCCCCTTGAGTGCGT	ref_2573_missing	33	72	37	34	60	37	60	49	76	25
TGCACGAGACTCTAAG	ref_2573_missing	6	21	15	8	17	4	12	5	11	3
GTGCCCTCAGGGTTCA	ref_2573_missing	55	63	71	50	48	39	59	39	61	47
ACTAACCTTATACGGT	ref_2573_missing	5	16	9	7	14	8	10	9	16	10
TCTTAGCTTCGGGCCC	ref_2573_missing	21	25	26	20	24	19	21	8	26	22
GCGGAGTATCCAGCTA	ref_2573_missing	5	10	18	11	7	7	7	4	7	5
GTGTCTCCCTGCTAGG	ref_2573_missing	32	50	38	29	41	22	62	31	48	26
ATAACCTGATTCTAGG	ref_2573_missing	2	6	0	0	3	3	2	8	1	3
GGCATATACTTTCTCG	ref_123_missing	54	82	61	35	86	75	82	45	86	46
ATTAATTATTTACGGT	ref_123_missing	20	20	24	20	23	23	21	25	21	21
ATTCGCGGCTTTAATG	ref_123_missing	36	43	37	35	50	30	45	34	51	40
TTGCATAACCAATTAT	ref_123_missing	6	4	9	6	13	2	8	8	10	8
ACGCTTCAAATGGAAC	ref_123_missing	43	53	47	42	76	37	63	52	66	33
TAGGCTTGGCCGACTT	ref_123_missing	49	63	54	36	62	63	68	46	67	46
CATTTCGGCTGAGCAT	ref_123_missing	22	25	24	18	22	17	26	17	14	18
CGTTTTGGTCGCCGAA	ref_123_missing	65	79	76	84	69	71	89	50	92	52
AGTCTTAAAGTAGTCG	ref_123_missing	123	181	109	129	175	108	148	95	191	106
CGGTTGAATGAATTTG	ref_123_missing	5	5	1	1	4	6	3	6	4	1
ATCGCTCTTAGGACTG	ref_123_missing	9	17	3	11	23	7	19	10	14	8
ACCGTTGTCTACCGAC	ref_123_missing	0	3	1	1	7	2	8	1	6	1
TTGAGTCTCCACTGCT	ref_123_missing	0	2	1	0	2	0	0	0	3	0
CGCTTCCTCCTCACCC	ref_123_missing	109	177	133	105	200	121	177	95	194	103
CGACTTGTACTAGGCA	ref_123_missing	32	56	45	32	61	29	64	36	54	37
CGCCGCTGTTATTATG	ref_123_missing	3	14	5	7	13	4	12	9	12	6
TTCGTGAAATAATGTC	ref_123_missing	46	64	46	36	55	49	62	46	55	32
AGACGCAAATTGGTTC	ref_123_missing	0	0	0	0	0	0	0	0	0	0
CGCGTCAATTGAACCC	ref_123_missing	0	0	0	0	0	0	0	0	0	0
CAATCTATAACCAGTT	ref_123_missing	14	33	37	25	25	23	35	22	46	27
CGGTTAAGCAACACCT	ref_123_missing	19	22	27	22	29	17	36	19	35	16
TCGCGCCGAGCGGCGT	ref_123_missing	41	48	46	35	54	46	46	40	56	34
TTTTGAGCGAGCGTGA	ref_123_missing	29	35	26	32	39	31	40	13	24	18
GAAAAACCTGCGATTT	ref_123_missing	10	24	14	15	11	9	18	9	13	14
TCGCTTGTGGGTTGTT	ref_123_missing	22	68	36	29	59	27	57	23	60	21
CGGAGCATATCCACAT	ref_123_missing	50	40	38	35	45	37	49	34	49	28
CAAGGGCGTCATTATC	ref_123_missing	15	16	10	13	21	13	17	12	18	9
GGTCGTGGAGCTAGCT	ref_123_missing	12	16	16	8	15	20	18	3	6	14
AGACCCATAATCCTTG	ref_123_missing	38	57	37	38	38	27	58	37	49	19
CACTCGCTTTCAGGTC	ref_123_missing	49	87	42	39	72	46	91	25	94	33
TATCTCGCGTATTACC	ref_123_missing	0	0	0	0	0	0	0	0	0	0
ATAGTCTGCCGTTCAA	ref_123_missing	0	0	0	0	0	0	0	0	0	0
TACAATACTACCAGGC	ref_123_missing	0	0	0	0	0	0	0	0	0	0
CTACGTTATCTTAGGC	ref_123_missing	14	18	9	8	16	11	11	11	19	11
TATCAAGTGCACTGGC	ref_123_missing	15	20	19	15	36	14	14	12	37	17
ACTAACGGGCTTTTGG	ref_123_missing	0	0	0	0	0	0	0	0	0	0
CAAGCTCAACCCCTAC	ref_123_missing	38	62	40	25	61	26	67	18	67	37
ACTCGTGCATTTAACT	ref_123_missing	12	13	9	7	27	6	15	7	13	9
CCATTCGTCGACTATC	ref_123_missing	7	17	15	6	12	7	19	13	24	8
TGGAACGTCCGCCGAG	ref_123_missing	5	7	15	5	12	8	14	8	13	8
GGTCAGAGCGTACGAT	ref_123_missing	82	136	83	77	123	76	132	46	105	70
TTCGGCTTCGGCATAC	ref_123_missing	0	0	0	0	0	0	0	0	0	0
CCTATGAAAGGACTTT	ref_123_missing	12	12	15	19	13	15	18	7	23	12
TTCAAGAATCGCTTTA	ref_123_missing	22	28	20	29	19	22	32	13	29	13
TGTGCCTACCTCCTCC	ref_123_missing	0	0	0	0	0	0	0	0	0	0
CACTTAGGCCCCAGAT	ref_123_missing	353	451	381	360	511	352	521	285	520	322
TGGCTGGCTCAGCCTT	ref_123_missing	54	82	55	50	68	55	85	44	81	41
CCTTCTTATGTGTGAC	alt_5709_new	0	0	0	0	0	0	0	0	0	0
GAAATGGCCCCAACAT	alt_5709_new	91	98	149	107	116	97	125	101	122	101
ACGGCCGAGAGTGCGT	alt_5709_new	8	12	10	7	8	4	17	8	12	8
GTAAGGGGCAATTGAG	alt_5709_new	76	73	86	74	108	64	102	87	96	84
TCTTTTGGCCAACTTT	alt_5709_new	76	94	83	76	118	74	77	66	95	87
GCGGAACTAATTCGAC	alt_5709_new	17	33	32	29	25	33	23	25	22	23
AATATATAACTACATT	alt_5709_new	16	15	14	8	16	17	10	13	9	13
ACTCGCGCTGGTTGTT	alt_5709_new	40	35	39	29	41	18	43	18	42	31
CTGGTTGTTATCTCAA	alt_5709_new	105	114	143	110	122	126	132	91	127	105
AGGCCCCATATGCGCT	alt_5709_new	156	128	180	137	152	122	160	123	138	115
AGGTTGTACTTGTAGG	alt_5709_new	3	10	11	13	7	8	12	6	12	8
TAATTGTGCATCCTGC	alt_5709_new	47	36	44	21	50	49	37	37	40	32
CATCTTGGCTAATCCC	alt_5709_new	18	15	15	10	12	9	9	7	19	11
TGTGCGTCGTTTAGGA	alt_5709_new	49	62	63	44	59	38	79	48	65	36
GACTAGGATCACTACG	alt_5709_new	0	0	0	0	0	0	0	0	0	0
ACGTTTGTGGTTCTTG	alt_5709_new	0	0	0	0	0	0	0	0	0	0
CCCTGTAAATGTATGT	alt_5709_new	23	35	27	26	28	28	22	32	30	25
TCGGTTATCTAACTCC	alt_5709_new	61	66	96	67	63	50	85	51	92	74
GAGTGTGGGTTAATAA	alt_5709_new	45	44	60	44	53	39	55	41	51	40
CAGTCGGCCATATTCT	alt_5709_new	33	29	35	32	19	25	33	20	33	28
TTTTTACGCCGCAACA	alt_5709_new	0	0	0	0	0	0	0	0	0	0
TACCCCGTGTCTGTTG	alt_5709_new	12	26	21	15	29	12	16	12	18	14
CTTCGAGGCCACTGCT	alt_5709_new	0	0	0	0	0	0	0	0	0	0
ATTATTTGGGTTCTAA	alt_5709_new	0	0	0	0	0	0	0	0	0	0
CGTTTCTAGTATGTCA	alt_5709_new	29	11	24	26	20	17	22	17	17	13
GCCGTCCGGTCCACCC	alt_5709_new	2	3	6	4	2	5	4	0	9	4
CAGAGGTTCCTGGCAC	alt_5709_new	20	35	33	16	18	19	29	22	28	24
TTGGGTTAATACGGAG	alt_5709_new	24	37	46	34	46	43	45	29	44	40
TCCTAGCTGGAGGGGG	alt_5709_new	24	15	19	15	23	15	13	22	28	16
TGTCCTTGTATCCAAA	alt_5709_new	26	31	29	23	28	30	34	27	28	14
TTACTCACGGCCTTCC	alt_5709_new	2	2	0	2	2	7	1	1	5	0
GAGCGGGTTGTGTCGT	alt_5709_new	39	24	37	20	28	29	31	27	17	30
TTTTGTTATAAGAAAT	alt_5709_new	9	8	12	4	8	3	11	9	15	7
TCATCACTTATGTAAA	alt_5709_new	5	15	16	9	8	12	12	12	13	13
GCCGTATATTAGTGTC	ref_5709_new	49	87	77	75	89	50	84	75	84	66
CCGGTTGTCGTGAGGT	alt_5709_new	0	0	0	0	0	0	0	0	0	0
TCGTGTTAGCTAGTAA	alt_5709_new	15	14	15	14	10	14	14	8	16	17
AAACTTACTGCCCTGC	alt_5709_new	0	0	0	0	0	0	0	0	0	0
CGGGTATCCAGCGTTG	alt_5709_new	18	34	33	17	31	25	35	17	31	33
GGTAGCACGGGTAGTC	alt_5709_new	42	57	45	31	32	47	53	36	66	42
TAGCATGTACCGTATG	alt_5709_new	0	0	0	0	0	0	0	0	0	0
CCATAAAAGAAGACGG	alt_5709_new	43	40	50	50	57	38	52	48	50	33
CCTGCTGTGCTTCGTT	alt_5709_new	18	35	26	37	32	20	34	18	36	11
TGACTATCGGACGTTC	alt_5709_new	1	0	0	4	2	0	3	1	0	2
CTACTCACGTTTATTG	alt_5709_new	2	5	2	3	13	1	5	0	8	4
ATTAGGAATCGGGCGC	alt_5709_new	56	73	62	66	61	80	53	51	86	49
CTGGAAGAAAGGGTTA	alt_5709_new	26	32	46	34	29	29	31	35	43	23
ATTTTCGTTTTCGTAG	alt_5709_new	101	136	147	110	126	94	122	89	150	107
GTCTGCATCCGAGATG	alt_5709_new	0	0	0	0	0	0	0	0	0	0
CGGAAGAACTGGCTTT	alt_5709_new	134	132	174	115	150	126	182	127	173	119
TCTGACATGGGTTCGT	alt_5709_new	12	32	29	28	36	26	23	23	34	22
TCCGTCTTTTTGATGT	alt_5709_new	30	49	35	21	46	28	53	36	49	25
AGCTCTGTTACCCGCT	alt_5709_new	15	13	28	23	23	19	19	17	8	11
TCGCCGCGGCTATCGA	ref_5996_new	14	12	12	12	16	7	21	12	17	6
AGAGCGGGTAGTGACA	ref_5996_new	6	19	17	10	29	24	20	14	30	15
CTTTCTTCACTACTTC	ref_5996_new	15	24	16	17	13	7	17	17	19	11
ATGGGCCGCCGTGTAA	ref_5996_new	61	98	86	62	100	58	124	70	126	56
ATACTGTAGATTCGGA	ref_5996_new	38	48	36	37	54	32	63	25	54	30
GTCAGTTTAGGGGCTG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
AGCGGGGGCGGAGTCA	ref_5996_new	0	0	0	0	0	0	0	0	0	0
CAGTTCAAGACCAAGC	ref_5996_new	5	2	2	3	3	2	7	0	1	8
CTTCCGTAGAGTCTTC	ref_5996_new	0	0	0	0	0	0	0	0	0	0
GTTAACCCTAATGCAC	ref_5996_new	22	62	27	18	50	24	59	32	55	28
TCCATTCCTCACTCAT	ref_5996_new	6	14	8	7	17	4	22	10	12	10
ACATGACGATTGGATT	ref_5996_new	37	56	60	39	81	39	91	45	72	35
ACACTTAGTTGCCATT	ref_5996_new	0	0	0	0	0	0	0	0	0	0
AGGTGATTATCTTTAG	ref_5996_new	6	10	14	4	15	18	15	6	12	6
TCTTGTGTCCAATCAG	ref_5996_new	15	18	12	14	15	11	9	8	19	15
TAGGTTTTCACCTAGT	ref_5996_new	51	69	40	34	75	34	83	33	58	28
GTTGGTCATATTGTCA	alt_5996_new	2	3	0	2	2	4	11	1	10	2
CCTAATTTCGTTTCGA	ref_5996_new	0	0	0	0	0	0	0	0	0	0
GGGTAGATTAGTGCGA	ref_5996_new	26	37	34	26	47	27	42	16	42	22
TCTGCGACGTTTTCTA	ref_5996_new	19	36	31	31	38	35	46	23	39	29
ATAGCGCCAGCTTCGT	ref_5996_new	5	13	17	8	17	9	17	11	20	8
AATACGTAATGCGCCT	ref_5996_new	46	63	71	47	91	35	64	46	109	41
AAGCACGTTCTACCCA	ref_5996_new	0	0	0	0	0	0	0	0	0	0
GAAATATTTGTGGGGC	ref_5996_new	24	44	47	26	29	25	46	26	34	30
AAGTCGCATACTTATT	ref_5996_new	48	84	56	43	77	59	87	47	91	43
TTTTGGATAAAGAGCC	alt_5996_new	17	19	23	15	18	15	30	17	25	12
GCACTTTGCGGGTCCG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TAGTCCCCCCCTCGAA	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TTGGTCTAATCGACCT	ref_5996_new	35	74	51	50	65	39	82	53	90	27
CATTGATTCTCGAATT	ref_5996_new	15	34	21	22	36	14	32	12	41	15
TCTATGTCCACTCATA	ref_5996_new	3	1	2	0	6	1	2	3	1	2
AGCGCGCTACGGATTA	ref_5996_new	8	18	6	12	16	13	20	7	16	8
ATTCCGTGTAAAGCTT	ref_5996_new	115	187	157	114	197	135	225	154	228	135
CCACAACTCTTAAGCT	ref_5996_new	6	10	8	6	8	6	7	3	20	2
CAATTTGGATTCGCTT	ref_5996_new	3	6	5	7	4	1	12	2	2	2
TGTATTATTAGAGGAC	ref_5996_new	12	23	22	19	15	11	33	9	23	11
ATCTTAATATTTTTGT	alt_5996_new	28	25	38	42	27	34	33	30	48	26
TGCCGCAGTGGTGGGA	ref_5996_new	15	21	5	10	18	5	18	4	23	8
TTACATGAGGCCTGCC	ref_5996_new	0	0	0	0	0	0	0	0	0	0
CTGTTGACGGCTAGAA	ref_5996_new	0	0	0	0	0	0	0	0	0	0
GATTTACGGTTGCATC	ref_5996_new	50	67	49	55	63	45	62	46	67	45
AGGACTTTCTTAGCGT	ref_5996_new	6	24	9	6	15	9	20	10	15	14
TGCGCATTTAGTCCCG	ref_5996_new	0	1	0	4	2	2	1	1	2	0
TTAGTACTTGCTAGTC	ref_5996_new	20	39	37	37	40	30	31	30	42	30
TTTAATAGGTTATATC	ref_5996_new	2	3	0	2	2	0	2	0	4	0
AGTACCGGCGCCCTGG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TCCATTGATACGGAGG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
CGGGAGGGTTGAAAAT	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TTAGTACGGTTGCACA	ref_5996_new	17	31	34	30	52	23	51	16	45	24
GGCACAATTCCGTCAC	ref_5996_new	48	80	51	54	56	55	76	48	71	28
CAGGCTCCCTTAATCC	ref_5996_new	2	2	3	4	4	7	1	5	4	0
CTGTTGGTTGGGTCCG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TGCTCCCCTGTGCACT	ref_5996_new	0	0	0	0	0	0	0	0	0	0
GGATAAAGTCCCGGAA	ref_5996_new	0	0	0	0	0	0	0	0	0	0
CTGACTACGTACATTG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TCCTATCTCAAGTGCG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
ATCGTGATAGCTACTC	ref_5996_new	10	20	15	13	20	8	22	12	14	14
GCCCCCAGGTCGTCTT	ref_5996_new	45	109	79	84	85	57	93	50	99	57
CCTCGCGAGTTGCTGG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
CAAGCGTGGGATGTTC	ref_5996_new	32	68	66	27	71	42	68	49	70	40
AACAATCCTACTCACA	ref_5996_new	3	5	10	8	5	6	5	5	9	3
ATGAAGCTCACACTCC	ref_5996_new	0	0	0	0	0	0	0	0	0	0
ATTCAACCGTTTTATC	ref_5996_new	21	31	24	11	25	16	29	17	32	16
GGCTCGGTTATTTTCC	ref_5996_new	0	0	0	0	0	0	0	0	0	0
GTACATGTGCGTTTAT	ref_5996_new	51	67	43	44	57	54	50	32	69	46
GCTCGAAAGCTATTAG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
ATTCCCCGAGCGGTCA	ref_5996_new	5	4	5	4	7	3	7	7	14	3
GCCTCTAGTCCAATAG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TCTGTAAAATGTAGTT	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TTCGCGTACTTGTCTG	ref_5996_new	0	0	0	0	0	0	0	2	1	0
TGCATATATGTTAATC	ref_5996_new	1	3	0	1	4	0	3	0	10	2
GACATACAAGTTTATG	ref_5996_new	1	5	3	3	3	3	5	7	6	7
TTCATTTAATTCTTGC	ref_5996_new	0	0	0	0	0	0	0	0	0	0
AAGCGCCTCCTGGGCG	ref_5996_new	9	5	3	4	14	4	6	9	11	4
TCTCCCGGTATCAACC	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TTACCGCGTATTTTCA	ref_5996_new	0	4	1	6	1	3	7	1	6	4
GCACCTGGCGTTTTTA	ref_5996_new	16	22	16	16	21	12	11	20	16	12
ACTCTTAGTGCTGTTT	ref_5996_new	14	20	16	7	18	14	19	10	29	10
ACGTCGTTCTTTATGT	ref_5996_new	28	42	21	16	30	14	42	27	52	19
GACCAAGATTATTGGG	ref_5996_new	2	6	4	3	3	4	6	4	9	1
GTCCTTGTGTGTATAT	ref_5996_new	0	0	0	0	0	0	0	0	0	0
ACCAGTTCGAAGAGGC	ref_5996_new	11	8	13	8	6	12	19	11	12	10
CGTAAGTCTACTCTTC	ref_5996_new	1	0	0	0	1	0	0	0	0	0
GAATAGCTTTTACGGA	ref_5996_new	11	23	8	14	18	6	17	8	10	6
ACTCCTGGTGTTTGGG	ref_5996_new	14	33	9	3	20	12	18	11	38	4
TTTTTCCTTACCGGAG	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TCCTATAGTTACACTC	ref_5996_new	1	17	9	7	21	6	36	2	28	2
TCTATTGACGTCAGGC	ref_5996_new	5	7	7	5	4	2	4	2	8	5
GAACGGAGTCAATGTC	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TACAGCATAAAACTGC	ref_5996_new	3	12	16	9	22	12	19	8	15	2
GCCGAAATGCGAACAG	ref_5996_new	7	6	3	4	6	3	9	3	11	8
GCTCGCGTTTTCAAGT	ref_5996_new	60	83	51	79	98	77	114	52	104	52
TCTTTCGTGTCCCTCC	ref_5996_new	5	1	3	5	8	4	11	4	7	3
AACTACTTCATATGCT	ref_5996_new	13	16	8	14	16	3	10	8	14	8
CCTTCCGAAGATATCG	ref_5996_new	4	4	5	3	1	12	0	4	0	7
CGCTCTTTGATTTGCG	ref_5996_new	13	16	15	13	12	11	13	10	22	13
AGGAACTTTTTGGATT	ref_5996_new	1	11	11	6	9	8	10	6	5	2
TACTATGCTCCATGGG	ref_5996_new	5	5	1	3	0	5	2	4	1	2
TCAGACTCATCTTCCT	ref_5996_new	0	0	0	0	0	0	0	0	0	0
ATGTGGCGTGAGGTTG	ref_5996_new	11	16	6	9	13	18	15	5	22	14
GATGGTGTATCTAGTT	ref_5996_new	0	0	0	0	0	0	0	0	0	0
TCCAGCATTTCAATTC	ref_5996_new	10	16	15	13	21	8	25	17	19	12
GGGGCGGGTTCGGTAA	ref_5996_new	34	66	56	38	52	36	55	41	58	39
TAGTCCCACCCTCGAA	ref_5996_new	38	37	31	20	47	27	51	33	57	26
AGCACGTGTCTGCATA	ref_5996_new	0	0	0	0	0	0	0	0	0	0
AACTCAGAATCCTGTC	alt_3829_upstream	3	6	8	1	6	4	4	3	4	4
GAATGGTAGATTTTGA	alt_3829_upstream	23	31	26	32	33	29	39	21	42	21
AGTTGCAGGGTAATTA	alt_3829_upstream	21	29	19	12	25	16	18	16	22	14
GTGCTAGGGAGCAGGT	alt_3829_upstream	12	14	17	14	16	7	16	5	18	2
GTGACAATCCTTTCAG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGACTCTGTCCTT	alt_3829_upstream	3	4	8	7	11	10	14	4	6	1
ATCGTGTAAACGGACA	alt_3829_upstream	1	7	1	5	6	3	5	1	10	2
TGGTACGCACTATCAT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
AAACCTCTCGCTTTTT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCCGACGCAACCGCTT	alt_3829_upstream	23	33	30	15	36	20	30	9	34	16
ATGCCCTTAGAAACTG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TCGAAGCCCGTACAGC	alt_3829_upstream	24	32	15	17	27	10	32	16	37	33
TCCATCTTAATTAGGT	alt_3829_upstream	18	25	32	16	38	10	31	19	39	26
CCTAGTGGTGGATAGT	alt_3829_upstream	46	89	77	68	85	49	75	53	104	58
TACGTCGCCACTTTTC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CATGATGCTGGCTTGA	alt_3829_upstream	17	21	11	13	29	16	20	12	42	12
ACGATTTAAAGGATAG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CATGATCATATTACCA	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAGCTTTCATTTG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCTTACGCTTACC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCCTTTTACGCTG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CAACTCGTATTCTGGG	alt_3829_upstream	27	24	20	14	25	15	29	18	17	19
GGGCCTCTGACTCGGG	alt_3829_upstream	28	45	35	36	46	39	50	18	45	29
CGTCCGGCTCCCCGTG	alt_3829_upstream	0	12	3	2	9	5	11	1	13	4
CCCAATCAATGTACTT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTTTATTTTGCATTCT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TACCCTTCTCTATATC	alt_3829_upstream	54	69	66	52	104	57	75	48	85	44
GCTCACCAGTCGCTGA	alt_3829_upstream	14	41	23	22	39	11	34	21	43	23
AAGTTTTAGCACATAT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CGGCGCATTCTCAAAC	alt_3829_upstream	27	33	17	17	40	19	18	27	48	23
CTATTCACCTAGATTC	alt_3829_upstream	5	8	5	8	9	9	12	10	11	12
ATACAATGTACCCTAT	alt_3829_upstream	13	25	18	9	32	14	25	16	23	13
ACCGGACAAGTAAGGA	alt_3829_upstream	4	4	2	2	1	1	1	3	4	2
GGGACTAGGTTACATC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTACAGAATACGT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGATTTACTGAAG	alt_3829_upstream	29	55	41	28	50	22	65	32	58	20
GCCATGGGTATCTATG	alt_3829_upstream	48	83	57	47	104	44	92	43	123	42
GATGGTGAATGGGGTC	alt_3829_upstream	10	11	20	12	13	10	13	13	20	11
TATTCGGGTTTAAGGT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGCGCGGTGGTCG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TATATGCGTCAGACAA	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTGGTTGTTGTCA	alt_3829_upstream	13	23	18	13	20	8	21	14	17	8
ATATCTTAACGCGCCC	alt_3829_upstream	62	183	71	62	176	64	175	46	184	63
TGGATTGTCGTGTCAT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGGGCCCCACGGC	alt_3829_upstream	67	98	97	65	128	79	101	84	98	64
GGTGCGGAAGTCTAGT	alt_3829_upstream	8	9	4	4	6	7	8	2	8	5
CTCGTTATTTACTTAG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTAGTATTGTTTT	alt_3829_upstream	5	2	3	2	7	4	6	7	1	2
CCACGGGTTTTAGACT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
GCGTAGGTGCATCGAA	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTAAATATTCGCC	alt_3829_upstream	140	184	167	140	170	124	204	130	196	109
CGCGGAAGTATCACTT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGTACCGAAACTA	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTGTTTGGCCTGC	alt_3829_upstream	22	25	25	16	24	16	26	8	30	16
ATTTGGGGTTCTTTTG	alt_3829_upstream	15	14	11	8	12	6	20	8	11	15
CTTCTCACCTGATGTT	alt_3829_upstream	8	25	9	24	29	15	19	14	21	22
TCCGGTACAAATGTTA	alt_3829_upstream	11	31	20	26	27	10	33	10	22	14
TCAAGTATCCTTTTTG	alt_3829_upstream	30	33	35	30	35	28	57	32	54	23
GCTCCTCATCTGCTTT	alt_3829_upstream	10	24	16	16	33	11	31	16	28	16
TTTTTGAACGAGTCTC	alt_3829_upstream	21	40	33	23	46	18	46	24	42	24
TCTCGGCTAGTCAGCG	alt_3829_upstream	13	11	12	6	16	8	8	12	18	13
CGATAATCGCGAACCT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCAATTTTTCTCA	alt_3829_upstream	11	10	15	1	16	4	11	3	10	9
TTGCGTTACCTCATGC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCAATCGTAATAC	alt_3829_upstream	13	22	13	7	19	6	13	9	23	6
ACAGGTCCCTTCAAGA	alt_3829_upstream	6	21	16	9	14	7	13	16	17	6
CTACCAGGCATCATGT	alt_3829_upstream	20	39	24	22	46	16	29	7	24	7
ATAGTGCCGCGCGCTG	alt_3829_upstream	7	12	3	13	4	1	12	3	16	3
ATACAATGCAGTTTGC	alt_3829_upstream	23	41	23	22	36	21	31	22	43	22
CCTCGGATGATTGTAT	alt_3829_upstream	3	8	9	9	15	11	11	7	7	7
TGGCATTAGGTGATCT	alt_3829_upstream	10	21	6	26	18	9	14	7	20	7
ACCTGTCCACCTCACC	alt_3829_upstream	23	42	21	16	38	16	47	17	60	17
GTGATCAATGTTTTGC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CAGTCTCAACGGTGTG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CTGCAAAACATTCATC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATAGATGCCTAAATAG	alt_3829_upstream	30	66	33	23	59	29	60	40	62	23
TTTGGTGTTAACATTT	alt_3829_upstream	4	8	4	2	8	6	4	3	8	5
CACTTCGTTTAACTAT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTGGATATTTCA	alt_3829_upstream	6	0	3	3	5	5	5	7	3	1
GTTCTGTAGTATCAAC	alt_3829_upstream	30	39	25	21	46	15	36	21	41	16
TGCCACAAAACTAATA	alt_3829_upstream	14	19	13	23	15	16	18	8	22	7
AGTAGGCGGTACGTTA	alt_3829_upstream	17	25	34	23	29	15	30	17	18	11
TGGGTGACATTGACAT	alt_3829_upstream	11	39	12	7	18	15	21	8	23	12
CGCCTTGCTACGAGGC	alt_3829_upstream	26	32	31	31	42	19	35	20	35	20
ATACTATATCTAACGG	alt_3829_upstream	39	39	32	25	36	23	36	16	32	25
CCACGTGAATTGAATA	alt_3829_upstream	8	5	2	5	18	12	9	3	16	3
TATGAGGAGTTACTGT	alt_3829_upstream	31	45	38	35	44	26	58	40	91	30
GTTCTGCTTGCGGAAA	alt_3829_upstream	7	16	23	15	12	13	24	12	20	11
TCTTAGCGGGAATCTG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCCGATGGCCTAT	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGTGCATGTGCG	alt_3829_upstream	29	41	37	32	31	19	42	25	44	25
AGACATTCCAATGCTC	alt_3829_upstream	11	14	21	12	9	12	21	11	15	10
TTGTGCACTATATCAA	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
AATTCGGGAACTGTTG	alt_3829_upstream	13	30	28	32	35	19	39	12	29	18
CTAAGCGGGAAAAGCC	alt_3829_upstream	64	108	64	67	82	57	91	43	86	54
TCCTTCATCACCTGTG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CTACGAATTCTGGATC	alt_3829_upstream	6	11	10	5	8	5	12	8	20	5
GATTGCTCCTCGTTTA	alt_3829_upstream	7	23	15	13	17	7	16	11	20	8
GGCTTGGCCTTAGTTT	alt_3829_upstream	0	0	0	0	0	0	0	1	0	0
AGTCTGTTTCCCTATC	alt_3829_upstream	0	2	4	4	5	1	2	4	6	1
TCGTCGTATCTTTATC	alt_3829_upstream	8	12	11	5	9	11	20	7	10	11
ATCAAATAGGTGGCTT	alt_3829_upstream	8	18	13	13	18	10	17	9	15	7
TCTGTATTCTGTACCC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGCGTCATTTCTT	alt_3829_upstream	5	11	8	4	9	5	14	6	9	5
TGATGGTACGCTTTTA	alt_3829_upstream	8	2	5	6	7	1	9	1	9	2
ACTACAAGTTGTGCTT	alt_3829_upstream	4	15	12	14	10	8	11	6	9	2
AGGGAAGATGGCTGTC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCGTTGTACGTGG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTAGTTATTTCAA	alt_3829_upstream	57	44	67	74	49	50	41	59	50	63
TCTGTTATGTCCCTTT	alt_3829_upstream	13	18	15	15	21	9	23	9	19	8
TCGTGGAAGCCACCTG	alt_3829_upstream	19	44	25	31	55	33	74	29	62	18
AACCCTCTCGATATTC	alt_3829_upstream	6	6	8	9	6	6	9	4	6	7
TTCCTCTTATGGCGGT	alt_3829_upstream	28	29	24	28	24	22	25	21	36	18
GTTCCGTCCATATTAG	alt_3829_upstream	5	7	8	5	7	13	3	4	9	4
TTGAAGTTTTCGGGAT	alt_3829_upstream	3	3	6	1	1	5	7	1	6	5
AGTTCCTCTTCCTATG	alt_3829_upstream	11	16	11	11	15	7	9	10	15	10
ACAGTGCCGCATCCTG	alt_3829_upstream	0	1	2	4	2	3	1	1	6	1
ACTTACCAACTCATCC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TAACTGCCCCAGTCCT	alt_3829_upstream	3	4	5	4	2	1	9	2	4	1
ATGTAAGACAGTCCTT	alt_3829_upstream	26	37	29	31	26	24	27	26	36	12
GCCCCTTACTTTCCCT	alt_3829_upstream	11	22	11	12	16	12	19	10	22	9
GCGGTTATGTTATCAG	alt_3829_upstream	3	2	4	2	1	3	4	1	1	0
AGACTTTGTAGAGAGC	alt_3829_upstream	16	37	26	29	21	15	38	15	41	18
CGGGGATACTTCTTAG	alt_3829_upstream	27	27	35	15	29	23	32	21	25	12
TCGTAACAGACCTGAC	alt_3829_upstream	24	57	31	17	39	31	53	17	59	27
GGACTCTCATTTCTGG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTACGAGTGTCTATGG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGACTCTCGGGAG	alt_3829_upstream	12	40	38	21	46	22	43	19	52	21
ACGCTCCTTTTCATAT	alt_3829_upstream	10	7	14	8	10	3	9	10	23	4
CGTGTGGTGCTCGATG	alt_3829_upstream	5	13	5	3	12	4	13	4	10	3
AGGCTCGATTCGTATT	alt_3829_upstream	3	2	4	5	4	6	2	3	6	1
CATACAGGCATTCTCG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGAACGCTCAGCC	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATCCGATCTAGC	alt_3829_upstream	9	18	17	13	12	9	23	14	16	11
AGCGTTAAGGTTCAAC	alt_3829_upstream	50	79	63	59	92	41	90	56	83	41
CACCAGTTTACAATGG	alt_3829_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGTATATTAACTC	alt_3829_upstream	10	17	15	19	7	14	19	15	26	6
TTACGATAAGTTAAGA	alt_3829_upstream	0	3	1	3	1	0	0	1	2	2
CTAGCTTGATACTCCT	ref_618_fdr	9	21	9	6	19	7	28	5	26	6
GCTTGGATTAGCGGCC	ref_618_fdr	101	57	97	81	61	83	60	70	75	98
AACTGCCGCTGTGGTT	ref_618_fdr	16	16	29	26	18	23	15	27	30	22
AACCGGGTCTTTAGAA	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
GCTAATCGATGTGCTT	ref_618_fdr	138	85	174	166	104	163	84	157	76	114
TAAGGCGTTTTAGTTC	ref_618_fdr	160	81	159	144	74	151	119	139	94	142
TGGTTGGGGCTACAGT	ref_618_fdr	98	82	137	79	60	75	100	85	73	86
GGATGTCTTCTGGACC	ref_618_fdr	100	48	106	86	47	81	75	79	39	86
GTAACGCACCTTTCTT	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
CTACAGTTCGGGGGTG	ref_618_fdr	41	35	63	61	39	60	32	46	36	51
GAGTTGTCTCTGGTTC	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTACGTGCTAATC	ref_618_fdr	14	9	14	19	7	15	10	12	12	14
CCCTTTTTTAAGAAGG	ref_618_fdr	117	37	91	88	64	100	53	68	41	87
TTCGTTTGCCTTGTAT	ref_618_fdr	277	144	333	255	147	267	126	268	150	252
GAAACGCACTTTACCC	ref_618_fdr	16	16	29	29	25	15	13	25	13	14
GTGTGTGTTCACGCTA	ref_618_fdr	56	53	88	74	39	80	59	77	39	72
TCCGAGCGATGATAAA	ref_618_fdr	68	47	62	52	56	46	39	41	38	44
GTATGGGCGGTCTGGT	ref_618_fdr	55	37	84	65	34	60	41	42	42	72
CGAGCTACATGCTATT	ref_618_fdr	46	34	68	61	50	54	47	53	44	56
CGTACTTTTGTGTGGC	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATGTGAGTTGTG	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
AAGGGGAGCGACGTAT	ref_618_fdr	63	41	103	85	40	65	58	56	42	62
TGTTGGGAACCTTAGG	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
AATGTTCCATCTCTAC	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTCCTGCTACAAG	ref_618_fdr	215	151	259	194	108	204	115	171	142	170
ATCCGTTGTCTAGTTA	ref_618_fdr	105	74	131	138	69	119	62	114	75	103
CAGCTATTTGCTTCGG	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
GCACACTATTTGTAGT	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
TCTGACTGCGTGACAT	ref_618_fdr	313	207	336	325	226	284	210	306	255	274
GTGTCATTGATTGTAT	ref_618_fdr	186	125	230	190	133	181	144	185	156	153
TCGGCCACGATTCCTC	ref_618_fdr	90	45	95	83	49	67	51	66	50	70
CGATCAACCCCTTTAA	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
CCATTAGCGTACAGTA	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGAGCAGAAGTTA	ref_618_fdr	4	2	8	6	1	1	2	7	1	5
GGTCTAGTATTCCTTT	ref_618_fdr	17	9	27	11	8	11	11	11	11	15
GCAATGTTTCCCGTAG	ref_618_fdr	25	17	30	19	22	27	29	26	16	11
ACAGTGACGTAATTAG	ref_618_fdr	41	26	62	44	21	29	22	48	12	45
TCACACTTGCAAGTAC	ref_618_fdr	91	57	103	106	81	84	81	106	94	91
CCTAAGTTTTCTGCTA	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTAGCTGCTTACA	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGTTGCACTCTAT	ref_618_fdr	50	28	69	50	33	41	33	47	39	50
TTAGGACATACGTACC	ref_618_fdr	82	125	101	67	143	56	131	59	120	58
TGTCCTGGGAACTGAT	ref_618_fdr	69	60	93	66	38	76	52	70	40	67
TTCGATATCCTTGCTC	ref_618_fdr	39	18	37	15	19	23	19	24	12	14
GATTTTGTTGAGGTTT	ref_618_fdr	239	144	261	193	132	179	146	180	150	171
AGTTCTTCTTTGTAGG	ref_618_fdr	4	3	8	7	7	15	5	13	7	13
GAGGCCACAATTTAGT	ref_618_fdr	58	38	83	54	26	46	43	38	46	66
TTCGTCCAGTAGGGCT	ref_618_fdr	6	7	6	7	4	5	2	2	2	3
CATGCCGCACTGCTCG	ref_618_fdr	2	4	8	3	1	5	4	0	4	7
GGGACCTAATCGCGCC	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGATCGACAGTCG	ref_618_fdr	30	18	39	32	15	24	32	31	13	24
CTTGTGTACGCCACTG	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCTTCGTTTTTGA	ref_618_fdr	34	18	25	26	16	25	10	30	18	25
TTGTTAGCTACTTACA	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
TCGACAGATTTGTCAG	ref_618_fdr	55	36	43	56	29	45	28	39	30	52
TCTTGACTTAACCATT	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCTCTTTAATGT	ref_618_fdr	50	29	45	42	29	33	20	41	23	35
CCGGTCTCTTGTATGA	ref_618_fdr	90	107	95	75	142	93	134	104	159	77
CTCTCTACTGTCTTCG	ref_618_fdr	123	45	105	86	50	85	47	88	62	94
TCGAGTCACTGGCTCC	ref_618_fdr	59	36	81	80	35	57	43	59	60	58
GGACCGACCTTTGCCT	ref_618_fdr	71	76	96	74	84	78	76	72	87	74
TTGATGCTTCCATACT	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
GGACCGCCCTTTGCCT	ref_618_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTAGGCTTAACTT	ref_618_fdr	134	76	157	131	73	111	96	110	109	130
TCTATGCTTAGTCTAA	ref_618_fdr	39	12	33	27	14	19	20	16	21	20
TAAACATTTCTTTATT	ref_618_fdr	11	6	16	7	9	14	19	15	14	13
TATACGGGAACGGATG	ref_618_fdr	20	13	31	29	15	19	14	17	10	26
GCTCACCGTTTGGTAT	ref_618_fdr	17	23	16	13	18	17	15	8	16	13
TTAATCATGGGCCTCA	ref_618_fdr	2	2	3	3	5	5	3	2	2	5
TTCGTAAGACTCCCTC	ref_618_fdr	20	15	26	21	19	11	16	9	21	17
GCCACACTTTTTGCAA	alt_3359_upstream	19	50	16	18	63	10	49	21	56	19
TGCTGCTGTGTTTGTG	alt_3359_upstream	22	50	19	15	43	29	44	21	50	28
CATGTTCTTTCGACTT	alt_3359_upstream	6	6	8	4	10	5	11	4	7	6
CTCCCTGCACTCGTCT	alt_3359_upstream	46	74	49	44	96	36	76	41	101	42
TGATAGGACTGGCACT	alt_3359_upstream	34	46	46	31	77	23	58	31	76	27
GTGAGATGCCGGCGTA	alt_3359_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGTGGGTAGCGAA	alt_3359_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGCTGCGAAACAG	alt_3359_upstream	3	4	0	2	1	4	3	1	4	1
ACAGGACATGCACTGG	alt_3359_upstream	4	26	8	7	21	4	17	6	20	7
CCAATGTAAAGGTTAC	alt_3359_upstream	17	19	31	26	24	19	31	20	20	16
TACTTTCATACATCGT	alt_3359_upstream	22	28	23	27	19	25	22	18	16	15
ACATACAAACTCTTTA	alt_3359_upstream	22	41	24	30	41	38	50	29	31	23
ATTCTCATAAGACGCA	alt_3359_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTGCCCGGAGGAT	alt_3359_upstream	46	59	51	48	74	37	75	34	67	31
TTCCTGCACGGTGTCC	alt_3359_upstream	134	223	208	147	281	133	228	143	264	170
CTGAATTTCACCGTCC	alt_3359_upstream	5	18	21	9	19	4	19	5	19	8
AAAGTCCAACCGCCGC	alt_3359_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCCTGTCTCTTGG	alt_3359_upstream	28	45	32	43	40	34	48	19	36	30
AGGCGAGGTGGTTCGC	alt_3359_upstream	22	45	29	22	47	26	42	36	53	25
CCGGCATGCCTCATCC	alt_3359_upstream	0	0	0	0	0	0	0	0	0	0
CTATGTGTTTGATATC	alt_3359_upstream	22	56	32	27	58	24	68	19	57	25
TGCGATAAGTTGTTAG	alt_3359_upstream	5	4	7	16	14	6	14	6	11	3
ATTATTCCGACTAGGT	alt_3359_upstream	46	60	61	51	67	34	80	62	80	38
CCGTTCTTCTACGGTT	alt_3359_upstream	68	104	69	54	110	49	102	56	104	49
AGCATCTTATCGTTAA	alt_3359_upstream	41	60	66	42	53	42	65	43	62	37
GGCCATTCTAATGATT	alt_3359_upstream	31	28	18	26	47	27	39	22	33	28
TTATGGACTTTACATC	alt_3359_upstream	17	18	17	10	14	11	25	8	24	17
GTGTCCCCAGCCACCG	alt_3359_upstream	24	62	58	31	74	28	63	38	63	44
GATTTGCAATCTACGT	alt_3359_upstream	4	3	9	5	7	5	7	8	8	1
TGCAGGATATGGTTTT	alt_3359_upstream	11	19	11	11	12	5	28	5	13	9
TTATCGCTCTGTCGCG	alt_3359_upstream	9	6	6	9	10	7	7	4	8	4
CTGCATTGCACGTTAG	alt_3359_upstream	1	4	1	3	7	1	4	2	3	2
GGTGTTCGGGCCGAGG	alt_3359_upstream	62	70	56	55	95	49	84	55	110	64
GCGGTAGATCCCCAAG	alt_3359_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTTCGTGCATCTT	alt_3359_upstream	45	60	38	36	55	25	65	35	62	30
CTTTCGCTTCAGAAGG	alt_3359_upstream	1	3	1	0	2	1	2	2	1	0
TGTGGATTTATGTTGC	alt_3359_upstream	48	103	51	46	92	41	99	54	89	58
CTTTGACCATTACTTG	alt_3359_upstream	56	120	71	47	102	54	126	40	125	56
CTGCAGGTCCTATTTT	alt_3359_upstream	5	17	10	5	17	4	6	8	11	6
TTTTATCTGATCGGTT	alt_3359_upstream	40	86	50	54	75	54	64	39	85	37
TTACTCCCGTCAGTTA	alt_3359_upstream	0	0	0	0	0	0	0	0	0	0
AAAACTCAGTTGGTCG	alt_3359_upstream	36	65	42	37	62	33	50	22	61	32
TAGCACTATGAATTGC	alt_3359_upstream	14	18	17	12	25	7	22	9	23	14
AGCCGTGTCATTCCTC	alt_3359_upstream	1	2	5	0	2	0	4	2	6	0
TTAAATTGTTATGTTC	alt_3359_upstream	32	57	43	42	45	38	71	28	67	20
TACTGACCACAGTTGA	alt_3359_upstream	6	34	20	14	37	17	34	15	37	21
ATTTTCAGTACTCGTT	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
CCGCACTTCTAGGGGA	alt_3359_upstream	20	50	18	24	51	26	28	19	53	24
GGGGATTAGAGCACAA	alt_3359_upstream	5	15	11	7	16	12	8	8	18	2
TAACAAGCTCTGCAAT	alt_3359_upstream	15	25	18	12	29	14	23	14	25	12
CCTTTGTATGACCGAT	alt_3359_upstream	1	20	7	4	24	4	12	4	27	2
TTGACATGCTGAACAG	alt_3359_upstream	53	72	33	26	78	41	75	24	76	30
GATATACATCATGGTG	alt_3359_upstream	108	106	116	86	149	103	135	80	121	92
GGTTGTGATGCAATGG	alt_3359_upstream	111	193	133	113	204	97	202	108	202	106
ATGTGCCGCCACCTCG	alt_3359_upstream	95	169	120	79	181	64	189	90	149	78
GGCAGAAACTTTCCGC	alt_3359_upstream	7	5	5	13	12	5	11	4	13	6
GCCGCGGGAATGAAAT	alt_3359_upstream	3	5	6	1	4	1	5	2	5	4
AAGGCCCTGCAAACTT	alt_3359_upstream	1	6	6	0	4	4	5	4	5	3
TGGCCTAGAAAGGTCT	alt_3359_upstream	6	19	7	9	13	4	14	10	18	6
GATTCCCCCATCTTTA	alt_3359_upstream	6	20	14	9	21	6	27	16	19	5
CAAGACATTAAAGCAT	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
TACGTTAAACTGTTTG	ref_4486_reverse	32	46	44	38	79	34	51	23	47	33
TTCCAATCGATCACAC	ref_4486_reverse	64	76	82	66	96	65	81	59	67	57
GTCTGCATTTCTACGG	ref_4486_reverse	7	16	5	8	15	12	9	16	16	16
TTCTTCATTTCACTCT	ref_4486_reverse	2	1	0	0	0	0	2	3	0	1
ATTCCCTTGATGCACG	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
CACAAAGAGCGGATGG	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
CTTACTTGGATCGTTG	ref_4486_reverse	14	24	12	5	24	11	33	11	30	9
GATCGGATTAATCTGG	ref_4486_reverse	47	59	46	40	38	37	38	30	56	29
CGGTAGGTTATTTGCA	ref_4486_reverse	10	16	12	12	13	7	11	9	20	12
TGTGTGCGGGCAGTTG	ref_4486_reverse	6	8	15	4	12	6	18	12	10	12
CCACAAACTACCTCTT	ref_4486_reverse	24	38	30	22	35	18	38	25	47	32
TGACTCTAGTATTGAG	ref_4486_reverse	5	8	15	6	14	13	16	6	12	3
TGCATGCTTATACACG	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
CGTAATACCGACTTAG	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
AGTGGGTCTTTGTTCC	ref_4486_reverse	75	79	73	63	75	62	95	67	113	60
AGACTGCTTCGAGTTT	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
ACTCATAAGCATTACA	ref_4486_reverse	50	97	78	90	86	74	94	58	103	84
TCGATGTTCAATCTTG	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGTTAGATTGAGA	ref_4486_reverse	26	42	45	28	41	30	45	26	27	24
CGCTGATATGCATGTG	ref_4486_reverse	5	13	20	18	28	18	11	14	20	17
CACCCAAACCCTTCTG	ref_4486_reverse	26	33	25	25	32	30	37	21	43	21
GGTCTCACGTCACCCT	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
CTATGTATACCGGGAA	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCCGAAAGGGATT	ref_4486_reverse	0	5	0	0	3	0	1	1	5	2
TTGACTTAGCAGTTTG	ref_4486_reverse	6	8	3	9	6	3	7	1	7	3
GGTGTATCTGGACTCA	ref_4486_reverse	17	32	18	32	26	14	25	12	36	9
GCGCAATTTCGCCAAT	ref_4486_reverse	41	49	34	41	61	37	48	49	47	34
CTCTATTGAAGATGTG	ref_4486_reverse	41	45	37	34	47	36	51	30	49	31
TTCGTGGTCATTTTCA	ref_4486_reverse	134	167	179	142	210	128	173	125	176	129
TGCAGTTTTAACACGA	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
AAACGATGATGTTTGC	ref_4486_reverse	43	47	40	41	44	34	66	41	62	40
TGCACCGATCGGTAGA	ref_4486_reverse	28	42	24	22	40	25	30	20	38	16
TCTGGCTTTGCGATTG	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
TTACCCTCGCGGATTT	ref_4486_reverse	8	14	23	14	12	16	22	17	15	11
GGAGATACCTCGACGG	ref_4486_reverse	12	25	26	8	23	12	14	12	32	16
AGTAGGCTTAGCTTTT	ref_4486_reverse	10	18	19	20	14	15	19	12	14	22
GCTACGCCCTATTATA	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
TAAGAACCACGTCCAC	ref_4486_reverse	3	5	8	3	11	2	8	8	11	7
TACTATGTATAGGAAA	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
CGGCAGTACTTTTTAA	ref_4486_reverse	0	0	0	0	0	0	0	0	0	0
TACCCGCTTTCTTAGC	ref_4486_reverse	13	16	15	17	19	13	27	12	21	6
AAATAGAATGATCACG	alt_5715_new	28	17	56	34	15	36	18	32	23	24
GGGCGGTGCTTGTTTT	alt_5715_new	4	0	7	5	3	7	2	11	2	2
TAATTACCAAAACTTG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GACGGCGCTCTGGGGT	alt_5715_new	25	16	26	21	14	19	14	19	8	23
CGATTTATTTTTGTTC	alt_5715_new	110	71	146	105	48	108	76	97	64	78
TTAGCTAAGACCAGCA	alt_5715_new	28	20	43	38	16	19	20	30	19	19
CTTATGGATATCATTC	alt_5715_new	0	0	1	0	0	0	0	1	1	0
CAATCTTCGCAGCTGC	alt_5715_new	53	40	71	75	35	65	36	57	41	55
AAACTCTGGCGGTCGG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AAGCCGTTATCGCCCC	alt_5715_new	0	0	0	0	0	0	0	0	0	0
ACTGCATTCTCCGTAC	alt_5715_new	23	11	27	20	9	12	10	26	10	27
CTCAGGGTGTATTCGG	alt_5715_new	176	125	209	153	126	159	121	179	131	146
GGCTTCCCGTACTTAC	alt_5715_new	12	30	22	8	18	7	31	9	23	11
GTATTCCAATGATCGG	alt_5715_new	11	5	21	11	6	10	7	10	6	6
ACGATCCGTCGGTGTG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TTTTTAGATAGCTGCG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CCGGATCCACCTGATG	alt_5715_new	46	34	49	28	33	27	34	47	35	34
GTAGAACCGTACGCAT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
ATGTTAACGTTCGATG	alt_5715_new	32	18	41	32	25	29	24	30	14	20
ACGGCCTTCTAGTTAC	alt_5715_new	4	9	6	4	4	3	2	5	2	6
CTCGTGTTTGTATACC	alt_5715_new	9	6	22	9	6	8	6	6	7	12
GTACTAGACCATCTAA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TCCACCCCGCTGAGAG	alt_5715_new	39	24	41	34	28	43	36	38	36	32
TCCTGGAATGTTGCAA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TGCATCATATAAGAGT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CAGGGGTGCCTTTCTA	alt_5715_new	82	73	113	111	58	106	65	98	79	89
ACCATTGAGTTACTAT	alt_5715_new	4	4	5	10	6	3	10	7	9	5
AAATGGTAGGTTCGTT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TCGCTAGATTACTTGA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TAACTCGCGCTTCTAC	alt_5715_new	2	0	0	3	1	4	0	3	0	3
TAACCCGCTCTAGAAC	alt_5715_new	0	0	0	0	0	0	0	0	0	0
ATATTTTACTCAATTT	alt_5715_new	29	37	66	56	32	56	33	44	30	42
TCGTGCTGCGCATTAT	alt_5715_new	40	46	87	75	41	63	41	57	49	65
GATACTTTCGTCTGGT	alt_5715_new	66	38	76	88	50	58	43	62	43	55
GTACCGACGTGCTTGC	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TAGCTCGGTTAAACCC	alt_5715_new	64	54	79	75	46	64	47	60	42	46
GTGTCGGAGGTCTATA	alt_5715_new	44	20	56	57	23	39	23	29	43	33
GAGACTTGGGCTCCTT	alt_5715_new	42	13	34	28	20	21	25	30	28	26
AAGCCACTCCCAACGG	alt_5715_new	6	6	1	0	9	1	3	3	6	3
TTCGCCTTACAGATAA	alt_5715_new	29	18	26	18	19	22	14	32	24	25
GCGATTTTCACTCATG	alt_5715_new	67	51	94	64	68	73	43	58	62	56
TATGATAGGTAAGGTC	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CTTCAAGTGACTCGTT	alt_5715_new	404	250	464	404	269	365	277	369	280	321
AGGTGATAGATGTAGA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TCCAGGGGTCTGTTTC	alt_5715_new	44	28	51	39	45	37	40	46	26	40
TATTGTTGTGTTGTAG	alt_5715_new	96	78	104	73	61	80	62	107	75	73
CTCCGTTACCATAGCC	alt_5715_new	14	12	23	25	13	14	9	17	10	15
TCAATTTCTTATTTGG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TCTATGCACCAGTCTG	alt_5715_new	5	3	5	8	5	5	5	4	0	4
CAATCGTTTTAGGAAT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AAATCGGACTAACATG	alt_5715_new	12	17	22	28	10	24	8	25	10	20
GTTACTCGCACAGGTT	alt_5715_new	39	25	40	20	15	26	22	21	21	34
TTTCATACATTCTATC	alt_5715_new	38	26	57	49	27	47	27	37	28	33
CTTGCTTGGCTTGGAG	alt_5715_new	114	90	132	114	88	103	85	88	88	91
TGTTTACTTTAAAGGG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AATTATTTTATCCCGT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GGGATTTGAGGAGTAG	alt_5715_new	75	45	77	69	47	62	51	61	54	48
CGGTGTCTCGGATGAA	alt_5715_new	50	23	43	40	27	30	25	31	22	30
TTTGTTCACCTATACA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AGATTGGGGGATCTCT	alt_5715_new	50	19	53	44	26	61	26	51	25	37
TTCACACGGCTTCGGA	alt_5715_new	4	4	1	5	3	9	3	7	2	2
TCGGTCGCCCGCATAG	alt_5715_new	66	104	91	92	122	87	130	84	106	94
TGGCGGTGTGATGTTG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CCCATTCGTTTAAAGT	alt_5715_new	42	29	36	50	39	36	47	27	33	35
GCGATGCTTGCGTTAC	alt_5715_new	13	10	23	22	13	13	16	19	15	17
GGCCTTGCATCAGTGA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GTCATCGAACTTTGTC	alt_5715_new	24	13	13	20	12	15	13	15	15	18
TAACGTGCACGGGCAT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CATCTTGCTGGCCTTT	alt_5715_new	14	3	13	10	0	10	13	2	9	7
TCTCTAATTCCGGATT	alt_5715_new	37	22	43	41	30	48	38	48	30	34
CTCTATATCTATCCCC	alt_5715_new	31	23	41	44	16	43	34	42	22	30
GCGACTGAGTTCGTGA	alt_5715_new	26	21	51	32	34	24	20	34	27	32
AACGGAAAGAATCGTT	alt_5715_new	116	99	174	117	101	127	77	113	107	123
TGTGCACCAGTTCTGC	alt_5715_new	11	5	14	11	7	9	8	10	9	12
GAAGGAACCGACTAGC	alt_5715_new	64	45	74	64	48	55	44	61	47	50
AACGGCACTTGACCTA	alt_5715_new	24	23	33	31	16	16	14	26	19	28
GCTGCAAGGGACCATG	alt_5715_new	2	0	5	2	1	1	3	1	0	2
CGCCGTGAATAGACCG	alt_5715_new	47	36	82	60	59	58	31	66	47	65
TGTGATCTGAGATGCT	alt_5715_new	10	11	13	7	4	8	13	10	10	6
TTTAGTTAACAACTAT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GATACGTAACATCACT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TATGGGCCTACTACGG	alt_5715_new	49	31	44	52	31	33	29	37	40	29
TCTTGAGGGCAGATGC	alt_5715_new	203	101	207	225	119	184	138	182	126	184
TAACAACTGAGTTCAC	alt_5715_new	88	56	107	100	71	70	63	80	62	80
GGTGTGGTTATGGCGT	alt_5715_new	76	63	95	66	51	89	65	62	68	59
CGAGGCGGTTGGTTTA	alt_5715_new	63	44	68	80	52	56	27	48	43	57
CACTGTATTCTATGCT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GTTGAAAAGTTAAATG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
ACTTACCTCTCATACG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AAGTTTACAGGTCGGC	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GTTGATTGTTGTTTTT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AGCTACATCAGTGCCT	alt_5715_new	114	77	120	123	83	100	64	97	70	89
GTGAATGTGCCTGTCT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CTCGGATCCCTCTGAT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
ATAGACCTTCTAAGTT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
ACCTACGAAGGCCGTA	alt_5715_new	12	14	15	8	11	14	17	16	13	18
TCCTTATATGAAAGGG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AGTATGTGACTTGCTA	alt_5715_new	11	5	4	12	5	11	6	9	6	9
ATATTGATGCTTCTGG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
ATATTTGTAACACGGA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GCCTGTTCTGTCATAC	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TGCATAGGGATCAACA	alt_5715_new	158	95	227	157	97	153	102	103	102	131
CCGGGGCCTCCTTCCC	alt_5715_new	10	30	22	22	27	9	24	19	35	15
CCGGTACTCAGTTCCC	alt_5715_new	41	44	43	41	35	39	36	35	50	28
TTATACGCATACGCTA	alt_5715_new	23	13	27	22	13	25	27	12	22	13
CTGTCACTACGTTCTG	alt_5715_new	90	80	79	85	60	86	60	73	54	80
GGTACATGTGATTCCT	alt_5715_new	14	14	25	17	15	26	14	9	13	22
AGTTATGGCGGCTTTA	alt_5715_new	4	6	3	7	3	4	2	15	5	8
TTTGGTCTCAATTAAT	alt_5715_new	21	13	25	31	8	34	15	14	17	23
GACGTTCTGTTGAGCA	alt_5715_new	6	3	11	13	3	3	5	4	5	3
CCGCCACGTTTTTTAG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CCGGGAAAACCACTGA	alt_5715_new	6	6	12	4	8	7	15	9	12	7
ACGTCCAAGTCATACG	alt_5715_new	19	10	19	14	11	13	9	18	9	10
TAATAGCTGTTATTGA	alt_5715_new	38	27	42	59	15	44	29	47	28	32
CACCATCCAGACTTAT	alt_5715_new	13	10	20	7	23	4	14	16	19	10
TTACGAAAGGGGTCGG	alt_5715_new	33	26	31	37	22	34	23	33	25	23
CTCCTGGTGCAACGGA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CAAGTGATGGTTCGTC	alt_5715_new	22	21	42	40	19	37	22	34	16	29
CGCGTCGGTTCGTTGC	alt_5715_new	54	53	67	50	43	49	43	51	58	53
CGATTTCGAATCCTGA	alt_5715_new	87	41	105	83	57	89	58	81	70	71
ATTACTTCCGCATCCT	alt_5715_new	15	8	23	20	15	19	9	27	9	17
TCATTGTCCGCGGTAT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TAGAGCATCGTCTTAT	alt_5715_new	19	9	27	18	6	20	19	18	10	23
ATGGCGGCAATGATTG	alt_5715_new	72	37	119	109	44	90	48	87	41	59
CACGCCTAAGTTTGGG	alt_5715_new	24	25	26	11	22	17	27	18	17	17
CTGTTGTTCGGTACCA	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CATTCCTTACTGGGTG	alt_5715_new	0	0	0	0	0	0	0	0	0	0
GGCCGTGTACGTTGAG	alt_5715_new	14	5	18	15	13	14	14	14	10	14
TGGGGTATTTCTGAGC	alt_5715_new	114	78	135	142	95	104	64	126	87	104
ACTTGTCTCCTTTTTT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
AAGGTCTTCGCTCGTT	alt_5715_new	62	38	95	85	47	72	45	55	39	48
TGACACCCATCAAGTA	alt_5715_new	37	21	51	41	41	28	26	32	33	21
CCTTTCCGTTCTTATG	alt_5715_new	21	16	33	24	11	27	15	23	20	32
TAGCCAGCTTCTTTAT	alt_5715_new	0	0	0	0	0	0	0	0	0	0
CCGCTGAAGTCAATGG	alt_5715_new	24	48	34	43	67	32	49	38	38	20
GAGTGTGGTTTTGTCC	alt_5715_new	6	3	6	11	5	7	3	7	5	3
CAGACCCATTTTTCAC	alt_5715_new	17	11	18	15	14	17	25	12	11	17
TTTAGCCGCGATTCGT	alt_5715_new	18	17	42	21	22	22	17	21	23	28
AAAACGCCCAACTAGC	alt_5715_new	55	23	62	54	33	44	29	52	35	33
TTCGGGGAGACCCACT	alt_5715_new	86	54	106	84	41	94	57	50	63	78
ACGGTTCCATTCCCTA	alt_5715_new	50	56	74	51	80	59	59	45	67	73
AGTTTATCAATTAGTC	alt_5715_new	0	0	0	0	0	0	0	0	0	0
TGACTGTCCATGTTTC	alt_5715_new	41	24	38	45	32	32	20	58	31	41
TCCCGTCGGGAGATGA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CAATTGGTGGTACATC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
ATTAAGTCTTTTTAAT	ref_2272_upstream	14	21	12	16	8	18	18	10	18	8
CGGTAGTTATCCAACA	ref_2272_upstream	21	12	15	7	15	14	23	8	12	8
GACACAGAGCTGCCTA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
ATGGACGTGATTTCCC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCGGTTGTTGCCA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTCAACGTTACGT	ref_2272_upstream	2	5	2	6	7	5	9	2	14	2
TTAAGCTTGTAACGCG	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CAGGTCCTGAGTCCTT	ref_2272_upstream	12	8	15	10	10	9	10	5	21	4
TTCTAAGATATAGTGA	ref_2272_upstream	30	45	37	33	42	30	51	36	31	17
AAGAAATCTCTTTGTT	ref_2272_upstream	52	56	57	49	58	57	77	52	63	35
ACCAGATGGATATTCA	ref_2272_upstream	8	29	12	14	14	15	30	13	21	9
TATTACCACGCTTCGC	ref_2272_upstream	1	0	2	2	2	0	3	4	1	3
AGCATCGCTTGGCACT	ref_2272_upstream	30	42	46	31	44	25	47	33	54	30
TCAGTGCATCTTCAGC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
AGCATCATGAGGGGCT	ref_2272_upstream	25	35	23	10	25	23	30	21	36	15
TGTAATGCTGCGAATA	ref_2272_upstream	8	10	12	13	13	12	15	14	11	8
ATGCTAAGGGCAATAC	ref_2272_upstream	20	17	22	24	17	10	23	10	24	17
TTGTTGTGTATATATC	ref_2272_upstream	7	10	9	5	11	8	13	7	22	9
TTGTGTGCGACACTAT	ref_2272_upstream	26	38	34	27	36	21	30	22	29	27
TGCAGGCCTCTTACAT	ref_2272_upstream	13	9	5	8	11	5	10	14	13	8
TGAACGTAACCCTCCA	ref_2272_upstream	28	40	34	31	57	25	38	34	46	27
CACCAATAACCCGATG	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCGCCACCGACTA	ref_2272_upstream	74	123	92	119	124	87	124	98	134	91
ATTTTAAGTTCTATTG	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
ACACTGTGGGTATTGC	ref_2272_upstream	24	25	33	28	33	15	34	24	22	27
TAACCCCTTCTTGCAT	ref_2272_upstream	20	57	42	27	54	21	61	15	49	23
GACTTCCGTGTGGTTC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTTTTGGACCGGT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTATGCTTCCTTC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCACGTTGGGTCG	ref_2272_upstream	4	4	2	3	6	5	10	2	1	6
GTGGGGTTTTAAGGAG	ref_2272_upstream	20	27	22	18	52	30	40	33	23	12
TCCAATTGGCGCTACA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TACTCTATGCACTATC	ref_2272_upstream	95	92	80	90	113	66	95	88	101	76
CACGCAGAGTAGTGTG	ref_2272_upstream	9	29	16	19	29	15	34	11	32	9
GGGTGCGTGGTCGGTC	ref_2272_upstream	0	3	4	2	1	1	4	1	1	1
ATGTGACGGGGGGGGC	ref_2272_upstream	3	8	5	5	4	4	2	4	2	5
CTTTCAGTACGCATGG	ref_2272_upstream	63	60	76	82	92	63	67	50	81	61
GCTGAACACTGACTAA	ref_2272_upstream	43	79	43	47	75	36	71	30	62	26
CTAACCGCGCGCGTAA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTGGCCGGTTAG	ref_2272_upstream	71	92	78	63	84	73	88	54	96	42
TGACCTCGTTCCTCTA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCGGGTACTTATT	ref_2272_upstream	7	22	21	9	22	16	20	13	14	9
GGCTGTTATTTTTCCG	ref_2272_upstream	17	27	23	22	27	13	29	8	24	17
CTACGGGCTCGCTTCC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTATATGTTTGCT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTACTTGCTCTTA	ref_2272_upstream	38	38	34	22	53	14	50	35	48	19
GGGGATCATCCGTGAA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGCCTCACCTCCA	ref_2272_upstream	42	41	54	32	46	33	59	19	42	33
TGATTAACGCTCACAC	ref_2272_upstream	37	45	42	25	37	30	34	26	63	31
ATGTGATACATTGCAG	ref_2272_upstream	52	64	66	47	58	47	75	64	83	55
CTACATATGTCTGAAC	ref_2272_upstream	6	8	13	7	19	15	21	9	11	6
TAGATTTCTCGTTCTT	ref_2272_upstream	16	13	25	12	16	13	15	15	16	10
TGGCCGACGATACACT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
CTAAAGTCTTATCACG	ref_2272_upstream	20	21	20	12	25	11	27	18	22	16
TCTTTCGTTTATTCAT	ref_2272_upstream	41	58	67	57	72	54	81	50	78	50
TTCTTTTAGTCAAGCT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTTCGGGCACCCG	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TAGTAGGTGCCTTCAG	ref_2272_upstream	1	0	1	0	0	4	3	0	1	0
GTCTTATATGCTTCGC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGCTAATACTAGG	ref_2272_upstream	62	90	67	49	68	45	90	37	93	46
GAGGCACTGAGACGTA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
ACAGGATTTCCTCTTC	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TATTCATCGATTTCCT	ref_2272_upstream	3	3	5	0	6	2	4	4	1	2
AGAAGTAATTGGCCCC	ref_2272_upstream	44	41	44	33	44	44	53	30	45	31
CAAGCACCAAGAGGTT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCCTCGAGACCGC	ref_2272_upstream	0	0	0	0	1	0	0	0	1	0
TTACTCGGGACTTGCG	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
GGAACCAGGACACTAA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TATGACGGGGGAGTCC	ref_2272_upstream	98	140	124	118	125	114	135	105	130	82
AGCATTGGAACCTGAT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTCTAAATTAATA	ref_2272_upstream	11	30	18	25	26	13	19	15	26	23
CACGTCTCATTGTAGA	ref_2272_upstream	64	75	72	60	70	82	78	68	89	57
CAACTTTGATTCGCGC	ref_2272_upstream	28	36	53	28	49	24	43	47	50	29
TCGATGACTTTAATGA	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCACGCCCCTGTA	ref_2272_upstream	27	29	20	14	25	17	33	15	34	15
GACCTGTTCCAGGTGG	ref_2272_upstream	1	3	1	0	3	4	4	1	4	1
GTTCCGTTTTTTATGT	ref_2272_upstream	67	80	98	83	82	60	80	54	77	52
AGACAGCATCAGTTCG	ref_2272_upstream	32	46	52	45	58	45	62	36	57	33
GATTTAATCTCGTCCG	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TAAACCGTTTTAGCTC	ref_2272_upstream	10	11	9	8	11	6	9	12	16	9
ACCTTTTATGCCCGGC	ref_2272_upstream	12	22	16	6	21	10	14	8	19	7
TCCGGGTTATTTAGAG	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGGGGGTGATTCC	ref_2272_upstream	30	32	27	18	28	18	30	24	31	26
CCATAGTGATGCTTGC	ref_2272_upstream	8	14	19	12	22	19	33	15	26	9
TAGATACATATGCAAA	ref_2272_upstream	25	39	17	15	25	25	31	12	29	14
CGCGTGGACAATCATT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
GATGCCCAGTCTCAGG	ref_2272_upstream	58	77	56	53	69	40	105	61	86	44
CGCGGATTTACTCTTG	ref_2272_upstream	3	3	4	2	3	2	1	4	9	3
AAGAACCCTTTATCAA	ref_2272_upstream	13	5	8	5	8	9	12	9	8	10
GGGTCTTTACTTACTT	ref_2272_upstream	0	0	0	0	0	0	0	0	0	0
TATAGGGTTCTCATGA	ref_2272_upstream	9	15	16	18	7	16	12	8	18	7
ACCACCGTGTTGGCAG	alt_3730_missing	0	0	1	1	0	0	1	3	0	1
AAAACCAAGGCAGCGG	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TCAGGTTGTATATCAT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TTGCAGGAGATCAAGC	alt_3730_missing	48	53	44	42	54	41	66	44	54	26
CGCAGATTCTAAAGAT	alt_3730_missing	21	56	41	25	56	28	60	30	76	26
GGGTAATTATCAAACC	alt_3730_missing	12	14	23	14	19	9	14	3	11	11
CTTGTACTATATGCAT	alt_3730_missing	12	17	10	10	17	7	14	10	18	7
GTAGCGTTCGCGCTCC	alt_3730_missing	158	240	204	184	196	174	265	161	252	147
GCAACTACCCATTCTC	alt_3730_missing	22	48	34	23	30	32	37	32	66	25
ATTTTTTAAAAATACT	alt_3730_missing	7	15	8	10	14	14	19	9	21	8
GGAACAGCGGTATAAT	alt_3730_missing	26	38	35	37	56	35	55	39	65	24
ATTCTATCATTGTTCA	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
GGATCCGTTTTTCGCT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
GTTCGTTGGAAGTCCG	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
CTTAGTCATGAGGCAG	alt_3730_missing	34	38	36	27	37	37	35	28	54	25
ATGATGTTAAAGGGGT	alt_3730_missing	24	27	15	18	23	13	20	14	26	16
TCATCTCGCCATTGAA	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
ACCGGTCTGATGCGCA	alt_3730_missing	3	34	6	4	25	4	23	1	33	4
TGTCAGACCAATCAAT	alt_3730_missing	7	20	10	7	19	4	9	11	11	7
AACCTGTAAGACTCCC	alt_3730_missing	5	16	10	4	17	3	21	8	21	11
ATTGGTTGGCGGGAAG	alt_3730_missing	6	10	5	3	13	6	6	2	10	5
GCGGGGTCCTTGTGGT	alt_3730_missing	26	35	30	19	31	26	39	22	57	22
CGTTTACCACACTTAC	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
AATGACGAGTCGCCCC	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
CACTTTTTATATGGAG	alt_3730_missing	46	82	51	49	69	50	97	46	95	36
TTATGCCCCAGGAAGT	alt_3730_missing	32	42	21	18	44	20	53	24	50	23
TTTGCTATCTTTGGTC	alt_3730_missing	46	54	57	36	69	37	84	33	74	37
TGTATACCGCCGTCCT	alt_3730_missing	24	36	31	19	43	27	40	28	40	26
ACCCTCATGATATTTT	alt_3730_missing	8	5	3	8	9	12	13	5	9	6
ATGTATCTCCGGAAGG	alt_3730_missing	11	22	20	8	25	13	20	13	21	14
TGTTTCTAACTTGAGG	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
GTTTTTAGTCTCTTGT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TTCCCATAGGGCCCAA	alt_3730_missing	35	78	40	33	64	23	84	31	88	22
GTTATCTGAATCTGTT	alt_3730_missing	4	14	5	4	9	7	9	10	9	3
TTACGTTTGTATATGC	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
ATCTTCTATTACGAAT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
CTTAAAACCATAGGTC	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TAATTACCGAGTATGG	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TGTTTATGATTACCTG	alt_3730_missing	5	9	4	2	16	8	12	7	10	6
TTAATCTGATTATCCT	alt_3730_missing	61	66	92	62	93	59	118	51	111	49
CCGAGTTTAAGCCTAA	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
AGCTAGCAGTGCGCGG	alt_3730_missing	14	35	22	16	39	15	19	15	29	8
TAAGGATTTCACCATT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
GCCTATTACTTCATCT	alt_3730_missing	69	102	81	66	84	62	85	63	98	63
CTATTGGCCGCGCTAG	alt_3730_missing	28	19	22	14	31	20	28	14	30	7
AGCGTCCACATTACCC	alt_3730_missing	16	22	23	13	25	14	19	16	30	13
GGGTCATAATAGCGTG	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TATACACGTGCTTGCT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
CTTGGTACTTGATAAC	alt_3730_missing	30	55	34	33	53	31	54	38	77	24
CCATCGTAAGGTTTCC	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TACAGCATCCCAACTA	alt_3730_missing	5	11	14	5	11	4	11	8	8	2
ATCTTCTTCTGTGTCG	alt_3730_missing	18	24	16	13	35	28	26	22	26	18
GTGGTAAGTCTGCAAC	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TTGAGTTCACGGGGAT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TGCCCTGAGCATGCCT	alt_3730_missing	0	0	0	0	0	0	0	0	0	0
TCGTACCGACAGCTAT	ref_2558_upstream	90	112	102	68	105	60	122	63	122	59
GGAGTCTGACGCCTGT	ref_2558_upstream	10	11	16	11	7	14	8	9	14	11
TGGTCAAAAGTCATAA	ref_2558_upstream	41	57	66	40	57	44	47	30	55	39
TAGCCCAGAGAAGGGC	ref_2558_upstream	104	123	89	78	123	81	143	84	131	80
CGCAGTGTCCTCTTCA	ref_2558_upstream	66	48	50	57	61	50	70	47	63	63
TTAGTTTTTAATTGTG	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATCGGTGCCAAG	ref_2558_upstream	16	30	15	18	20	13	30	12	17	10
AACTGTCTAGTATAGT	ref_2558_upstream	16	23	16	14	24	11	23	20	18	13
GGGTAGCGCATCCATC	ref_2558_upstream	7	7	15	9	8	6	18	5	11	8
ATCAACGATTCACCAT	ref_2558_upstream	12	29	26	23	25	13	20	15	25	12
CCCGCCCATTAAGTTT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTGGATTGAGATA	ref_2558_upstream	5	8	2	8	11	4	3	2	9	7
TTTCTTGATAGTAACA	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TGTACTCTAGACTAAT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
CATTCGGCGCTTCGTG	ref_2558_upstream	63	69	65	43	95	60	94	45	97	58
ATTTTATTACCTGATA	ref_2558_upstream	17	47	16	18	43	12	34	26	49	9
ATTTGAATCGACGGGC	ref_2558_upstream	22	15	16	28	10	15	22	18	27	22
GTTGGGTAGGCCACTT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GATACTGCCCTACCCT	ref_2558_upstream	27	45	34	28	53	32	60	33	50	15
TGTTCCGTCGCCTGTA	ref_2558_upstream	3	3	4	1	2	1	8	1	0	0
CAGCCACCATGAGCTA	ref_2558_upstream	3	16	8	5	22	10	21	5	21	10
ATTGGCTAAACAGGCC	ref_2558_upstream	11	5	4	8	6	7	4	4	7	4
TGAAGTAACATACGAA	ref_2558_upstream	11	24	23	14	14	11	16	13	15	14
TTTATTTGGGTCATGA	ref_2558_upstream	38	49	35	48	43	41	54	32	64	36
TCTACTGGTCAATCCT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TGTTATCTGAACACAG	ref_2558_upstream	2	5	6	7	3	0	5	2	7	4
TCGAAGCGTAATCACT	ref_2558_upstream	19	19	21	17	21	8	37	17	19	15
GGGGGGTTCTGCGGCT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TTGATTATGATGGGGA	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCGCACGTTCCAA	ref_2558_upstream	2	0	2	3	3	3	4	1	3	3
GCGCATAGTGTGTCTA	ref_2558_upstream	35	75	43	26	78	21	62	44	81	40
CGACACGCCAGGTTTA	ref_2558_upstream	30	39	32	31	34	28	44	45	52	28
TCTTTGTATTATTTTT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TTCAATCAACATCCGG	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TTATATCCCCGGCCCG	ref_2558_upstream	11	12	5	6	22	8	9	15	10	11
ACGGGGGATGGGATCG	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGAACCGCATCCT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GACAATCTGTTAACAC	ref_2558_upstream	7	24	8	12	7	8	18	10	27	6
TTCACTAAGTATTGGT	ref_2558_upstream	24	16	18	7	39	15	16	14	33	8
TGGTGTCCAATTGTTT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGCGTCCGCGTAG	ref_2558_upstream	40	61	34	49	52	38	55	37	81	34
CTTGTGCGGTCTATTG	ref_2558_upstream	26	54	46	40	67	48	57	37	60	38
CACATTTTTGATTGGA	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGGAAGGTATTAT	ref_2558_upstream	15	19	22	27	32	19	31	24	28	20
TGTCCTGCATTTTACT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTCCTTCTCACTT	ref_2558_upstream	0	9	3	5	7	5	4	8	4	6
ATATTTCTTGTTCAGG	ref_2558_upstream	29	43	34	27	40	24	48	28	40	36
GCCTTCCTTTATTGGT	ref_2558_upstream	7	9	8	6	6	2	2	5	10	2
ATAAACCAGTGGCGAT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCGAGCCCCTCCG	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
CGAATTTGCGCCTTGT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TCACATTGAAATCACA	ref_2558_upstream	1	2	3	2	4	1	2	1	0	4
GCGTTCGTCAGTTTTG	ref_2558_upstream	20	37	28	17	32	20	44	18	32	21
GTCGTAAAGCATGCCT	ref_2558_upstream	9	4	5	13	6	11	12	17	12	3
AGATAGACCGAGCCTA	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCCATGCAGAGGA	ref_2558_upstream	14	33	29	15	21	19	29	17	23	20
GGCATGCGTACAATAT	ref_2558_upstream	17	37	20	14	30	11	34	26	30	18
GTGTTCTGCCGTATTC	ref_2558_upstream	52	63	79	71	73	60	71	65	69	53
ACATAGTAGTATAGTC	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
AACTCGTTTGACTTCT	ref_2558_upstream	31	55	38	22	48	26	53	25	48	35
AAATTTTCCGTTTACA	ref_2558_upstream	10	11	6	8	11	5	16	10	11	9
AGGGCCGCATGCTTTT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCGTTCCCACAA	ref_2558_upstream	17	27	13	18	22	19	17	12	32	4
TTTCGGCCATATGCGG	ref_2558_upstream	12	34	17	11	26	24	30	16	28	15
AGTGATGTGAGTACTT	ref_2558_upstream	30	56	66	38	57	41	57	29	53	32
CAATCGTAGTTTCTAA	ref_2558_upstream	47	104	80	74	99	79	103	60	82	38
TCCTTTTATATTACGC	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GGGATCGGCAGCGACC	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTTATGTACATAT	ref_2558_upstream	30	31	31	32	47	42	41	29	38	42
TGCGCGCGTCTATATT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCCCGTCGTATCC	ref_2558_upstream	0	23	0	2	25	2	37	0	31	0
ACCGGTAGGAACTCTT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGATGACATGTAG	ref_2558_upstream	11	16	13	14	24	19	28	12	18	6
TCATCCGGTTCACTAT	ref_2558_upstream	35	66	30	27	67	14	88	35	78	19
ACGTAGATCCTCTACA	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TGAGACTTACAGCTTC	ref_2558_upstream	12	22	13	17	19	8	12	10	21	10
GCGATTCGCCCAGATC	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
CATGTTCCCCTTGATA	ref_2558_upstream	4	5	5	3	5	3	1	6	1	1
CGCTGCATCCTTCTAG	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TAAAATATGTCGCGGG	ref_2558_upstream	18	13	14	15	18	20	15	12	16	11
ATTTAGATTTTCTGTC	ref_2558_upstream	45	45	43	44	51	46	52	40	46	43
GTCAGTATACATTTAG	ref_2558_upstream	10	10	8	5	6	3	19	5	6	7
CCTGCTCAATAGCTGC	ref_2558_upstream	32	51	29	24	43	43	39	28	49	34
TTTATAGCCAGGCAAA	ref_2558_upstream	28	48	56	29	46	48	58	29	50	25
AAAGCGGGCCACCCGG	ref_2558_upstream	7	9	3	1	5	1	10	5	5	2
ATATTCATATTATATT	ref_2558_upstream	9	11	1	7	7	7	5	3	5	2
CCTCTATTTTCCAGGT	ref_2558_upstream	7	32	11	13	31	2	35	18	35	15
TTGCAATAGTTTAAAA	ref_2558_upstream	7	3	2	4	15	1	9	4	6	2
ATAGCTTCTACTTGAC	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TGTAATCTCAAGCCAC	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
AATGTATTATTCTTCG	ref_2558_upstream	47	63	62	57	44	57	60	56	47	32
GTGTATGTGGGTGCTT	ref_2558_upstream	0	1	1	1	4	2	5	2	5	3
GTGGGTTTGCAAAGCT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GTCATCCTCAGTTCAG	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
GCGTATTTTTTACCCT	ref_2558_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTCACTTCCTTTT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GAAAATATTGCTCTTT	ref_3187_upstream	107	62	127	70	65	80	65	77	84	104
CTACTTATTTTGCATT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
CAAACTAACTTTTCCA	ref_3187_upstream	34	15	41	22	20	18	25	23	19	29
GAGTTCCTTTAGGTGT	ref_3187_upstream	43	32	58	32	35	38	40	42	30	58
TAAGAACACGACTCTT	ref_3187_upstream	7	3	3	3	2	7	1	3	4	4
TTCAACTTTCACTGCC	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
TCATCCTCTCTGAGGT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTGCGCTGTTTGA	ref_3187_upstream	47	24	59	35	19	55	17	37	24	39
CTCGAGTCTATATACT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
CCTTAGACGTAATTAC	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTCATCAGTGTCG	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
TGAGGGCAGTTTTCAC	ref_3187_upstream	23	10	33	11	6	16	17	14	5	13
AGCATAATGGATACCG	ref_3187_upstream	2	2	0	1	5	1	1	3	1	6
GGGAGAACCCTGATAT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGTGTTTTTTTGG	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GCATGGCCTGTAGACA	alt_3187_upstream	534	202	618	377	176	522	202	405	198	462
TGGCTAGTCGTGCAAC	alt_3187_upstream	169	108	165	113	128	106	113	137	152	164
CAATAGTCATCGGACA	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCGATATTCGTGC	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATTGTCGGTAGT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGGCATGGCTATT	ref_3187_upstream	188	87	223	135	99	162	103	142	91	188
ATAAGATCTACACAGT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GTATACTCATGTACTA	ref_3187_upstream	11	9	15	6	6	11	6	9	6	17
CGTCAGGAACAACCCA	ref_3187_upstream	40	12	41	22	22	22	18	20	19	40
CGGTCCAGTTCGCGTA	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGTTAGAGACTA	ref_3187_upstream	55	24	58	38	28	38	34	36	43	36
GTACCACTTGCGGGTA	ref_3187_upstream	22	9	24	12	14	7	14	23	10	6
TTACCGCGCTGGCCCT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
AATATGTTTCCTACTG	ref_3187_upstream	21	10	19	12	18	18	14	15	15	20
ATTTTTTAGTCCAGCT	ref_3187_upstream	27	7	19	13	7	22	12	16	8	21
TACTGTACGTAGTTAG	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
TAATAGGCTTTTCTTC	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GCCACACCTACTTTAG	ref_3187_upstream	45	27	52	26	29	34	35	33	36	40
CATGGACAGCCTTTGC	ref_3187_upstream	45	17	44	31	23	38	24	40	35	37
TTCGTAGGTTCTTTCA	ref_3187_upstream	141	73	175	106	72	122	78	125	71	135
TGGTTCCAAGCGGTCG	ref_3187_upstream	42	17	57	27	17	32	18	34	33	36
TTAAGTCTCACAGCAT	ref_3187_upstream	156	85	168	124	84	149	87	139	86	131
ACACGGGCTATATTCA	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
GATGGTTCACCGTTGT	ref_3187_upstream	57	22	39	28	19	40	25	32	13	39
GCGTAACGGTGTATCG	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
CACTATGAAAAACGAG	ref_3187_upstream	57	49	58	57	63	58	68	33	72	44
CGAACGCTATTATGAT	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTAACCTCCCGGC	ref_3187_upstream	59	40	71	43	48	66	56	59	47	66
CTAGATCCATTGGTTT	ref_3187_upstream	66	38	105	51	64	66	60	77	54	74
GCTTCCTTTGTATCAT	ref_3187_upstream	49	23	62	44	24	46	46	55	31	51
CTTGCGCTACTCCTGG	ref_3187_upstream	156	95	164	132	134	133	111	136	106	126
TTGAGCCGGTAATCCA	ref_3187_upstream	78	43	114	61	57	58	45	66	37	65
TCATCGAGGTACTGTA	ref_3187_upstream	13	2	16	8	4	15	1	7	7	7
CCACGAATAGGGCCAG	ref_3187_upstream	19	3	17	12	10	11	10	18	9	13
CGACTAGGTATAAGTG	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
CAGTCTCGACAATATC	ref_3187_upstream	0	0	0	0	0	0	0	0	0	0
AACTAGAGCTGGCGGC	ref_3187_upstream	200	124	231	148	139	174	129	147	157	182
CATCCTTGTTCGTCTT	ref_3187_upstream	117	85	147	97	98	110	95	132	91	100
GTTCTCTATCTTGTCG	ref_3187_upstream	88	36	62	50	38	73	47	70	44	72
TTATATGCACCTCTAA	ref_3187_upstream	112	67	142	99	79	102	80	87	78	118
GGTAGGCTTCTACCCC	ref_3187_upstream	8	9	6	4	8	7	7	9	5	10
CCAATGCCGGCTGACA	ref_3187_upstream	10	12	10	5	21	10	29	3	19	2
CCCCAAGGGGGTGTCC	ref_3187_upstream	55	22	53	28	26	44	19	31	21	38
GTGTTCTGCTCGCTTT	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGGTTGAGAGAGC	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
ATAATCCACTGCGAAG	ref_3685_upstream	9	10	3	8	17	8	20	3	15	9
CCCGCACTTATATTCG	ref_3685_upstream	19	121	18	20	135	19	139	9	156	14
TATTAAAGATTGCTTA	ref_3685_upstream	26	38	17	16	42	21	43	18	41	15
TGCTCCTGTCGCCTCC	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTCTATATCTGTC	ref_3685_upstream	1	5	1	6	3	2	3	0	4	0
TTTATTTCTACTCCGT	ref_3685_upstream	26	60	35	24	58	30	58	26	60	19
CTGGACGTTCTTCGGG	ref_3685_upstream	18	37	19	11	25	11	20	11	27	13
TGGTCTTTGGTATCTT	ref_3685_upstream	13	22	12	8	18	8	19	10	21	8
GACTTACCTTTCACCT	ref_3685_upstream	0	4	0	0	3	0	2	0	2	1
CACCTTCTTCTTGACC	ref_3685_upstream	21	38	30	23	47	19	53	16	48	19
AACCCCTGGCAGTTAA	ref_3685_upstream	12	36	28	13	42	10	40	12	48	18
CCCGCACTTATATACG	ref_3685_upstream	0	0	0	0	0	0	0	0	1	0
GGCCGCCAGTAAACTA	ref_3685_upstream	2	9	8	7	12	4	7	5	11	7
TGGTTGCAACCCCCAC	ref_3685_upstream	19	42	35	23	49	22	38	10	40	25
GTATTCGAAGGCAGTG	ref_3685_upstream	23	32	23	21	31	15	35	21	25	13
TGCAACGGCTCACGAG	ref_3685_upstream	1	4	2	1	1	0	6	1	5	1
GATCCCTTCATTGCAG	ref_3685_upstream	31	50	36	36	64	43	75	38	63	31
AGCCTGCCGTGGACCG	ref_3685_upstream	11	33	13	10	31	11	32	12	23	18
CTGGGCCATACCCACA	ref_3685_upstream	71	139	86	61	136	73	116	63	110	54
CAGGTAGCCAACTCCC	ref_3685_upstream	14	62	32	12	53	23	44	10	58	11
GTATTGTACTTTTTTG	ref_3685_upstream	1	3	1	1	3	1	7	0	4	0
CTTAATGCCGCGTATG	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGCAATACAGGTG	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
GAGGGTAAGGTCCATG	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCGGATATCTCTG	ref_3685_upstream	21	36	24	22	36	33	32	31	43	13
ATTAGTTTTGCTGTTT	ref_3685_upstream	17	33	26	13	34	18	26	17	26	15
CTTTTCCCAGGTATTG	ref_3685_upstream	67	122	92	74	110	67	121	66	132	56
AGATGGGAGGGTATGC	ref_3685_upstream	28	37	27	21	51	35	47	18	51	43
GGTGGTTAAGAGCTTA	ref_3685_upstream	3	4	2	4	4	0	5	1	5	1
CCCCCTCCGGGCGGCA	ref_3685_upstream	2	13	1	4	15	2	14	3	12	1
TGTGTGGGGTTAGTTG	ref_3685_upstream	19	37	24	27	46	26	50	20	52	33
CGACATACAGAGCCAG	ref_3685_upstream	8	17	11	13	16	8	20	11	29	8
TCCAATATCAGTTTGG	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
TCCACGCTTTCGCTGC	ref_3685_upstream	2	5	3	4	5	3	16	4	11	2
GATGTCGTCCTCTTCT	ref_3685_upstream	3	7	6	3	12	1	5	5	5	0
TTGTACGACGAACAGC	ref_3685_upstream	9	9	5	8	12	12	20	11	22	9
TACGTTTTAGCTTTTG	ref_3685_upstream	10	18	11	7	18	11	12	7	19	7
TCCCACGTCTTTTGTA	ref_3685_upstream	14	41	22	10	38	19	26	13	42	13
CACAAATATCAACAGC	ref_3685_upstream	21	59	19	16	33	14	41	14	39	22
GTCAAGGCGAGGGGTT	ref_3685_upstream	8	11	10	8	10	8	15	5	12	8
GAACCAAGTTTCTATC	ref_3685_upstream	15	50	23	25	41	21	41	18	52	18
CATGGTGCCTGCCACA	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
AAGTATGCGATCACGA	ref_3685_upstream	97	191	156	103	165	103	195	79	173	105
TAGACTACATAGTATT	ref_3685_upstream	31	63	43	41	55	36	61	24	68	26
CTGGTTTGCTTGGGCT	ref_3685_upstream	119	196	123	100	179	115	185	100	194	85
CACATGTTAATGTGCG	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
GACGTCGGAGCGGGTA	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGTGAGTTTGTGT	ref_3685_upstream	30	55	25	21	49	15	53	10	43	16
GGTCCCCCGCTCATAG	ref_3685_upstream	7	16	9	10	22	12	17	5	21	5
TCTTCAATGCACTGCA	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGATTACAAGATC	ref_3685_upstream	7	18	12	17	18	7	27	14	17	10
CATTGTTTCGTGAGTG	ref_3685_upstream	10	6	6	3	5	2	10	7	15	5
TAGAATTTCCACTGAG	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
TACCCAGCTCGTGATC	ref_3685_upstream	25	50	29	14	78	24	66	16	86	27
AATGTAATGCCGTGGT	ref_3685_upstream	6	14	5	12	10	5	11	8	8	4
TTAATCCGGGCTGTGT	ref_3685_upstream	3	16	7	5	22	6	26	5	23	4
ATACATCCTCGTATTT	ref_3685_upstream	6	13	6	8	20	9	17	7	18	3
TCTATTAAGGCCGTCT	ref_3685_upstream	12	44	9	7	34	7	46	10	34	12
CAAGGGGCTGTCACAT	ref_3685_upstream	24	62	41	54	56	38	82	38	77	27
GACCCTCGATGGGACC	ref_3685_upstream	0	2	0	0	0	0	3	0	1	0
TTTCGCCTATTTAAAT	ref_3685_upstream	9	23	14	7	21	5	30	11	22	7
TCCTGCACCTCACCTT	ref_3685_upstream	14	36	20	8	44	20	38	15	48	19
GCTTAATAACGGTGTT	ref_3685_upstream	0	6	4	2	9	3	4	0	2	1
TGATGTTGCTGTGCCA	ref_3685_upstream	20	35	25	25	38	23	47	17	54	21
ACTTCGCCATATACTG	ref_3685_upstream	17	30	16	14	22	11	38	19	48	11
GACCAGAGTTCAGGGC	ref_3685_upstream	52	92	81	52	127	56	131	42	110	43
ACAAAACATGTGGCTT	ref_3685_upstream	1	5	12	4	7	4	3	3	6	1
TCTCACTATAGCAGTG	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCTTCATGGCTGA	ref_3685_upstream	11	10	9	4	8	4	6	11	1	2
TGGATCTGAGTGCGCG	ref_3685_upstream	40	66	52	39	61	29	69	37	62	36
GTTTGTGTTCTCTCTC	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTGAAGTAGTAAA	ref_3685_upstream	0	13	2	5	12	2	5	1	12	3
TCTCCTGGACGACTGT	ref_3685_upstream	20	33	22	15	42	13	34	28	18	16
GGGGGAATTTCTGATG	ref_3685_upstream	11	21	7	8	28	14	34	14	9	11
TACCACTTAACTCACC	ref_3685_upstream	0	17	1	1	11	1	6	0	10	0
TACTTCACTGTTAACC	ref_3685_upstream	25	39	28	32	37	22	46	14	54	26
TGGGGGAGTTTCTATT	ref_3685_upstream	0	0	0	0	0	0	0	0	0	0
AATACATGTGATTCTG	ref_3685_upstream	3	3	6	3	3	1	11	2	1	4
TCCGGACCCACAGTTG	ref_3685_upstream	69	136	103	88	144	78	157	82	130	65
ACGAACGTAGTCGCTT	ref_3143_upstream	33	30	43	38	30	37	28	27	18	35
TAAAGTAATCTATCTT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGTGCTCTATGTC	ref_3143_upstream	147	118	182	145	92	127	116	145	121	113
AAAAAAAGCGTTTACA	ref_3143_upstream	189	147	231	181	136	187	168	180	174	127
CTTGACCATATCTTAC	ref_3143_upstream	33	17	21	21	19	18	19	23	28	26
GCTTATAATTTTCGAC	ref_3143_upstream	21	27	35	21	18	24	24	16	15	22
CAGGTGACGTTTGGTT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
GCGTAGCTTTTCGCGG	ref_3143_upstream	14	19	21	14	8	11	20	10	17	6
CTTTCCTTCCTCTCTG	ref_3143_upstream	54	32	60	34	38	43	43	35	25	36
CAACCGTAATGCAAAG	ref_3143_upstream	15	18	14	13	15	12	13	10	14	6
TTTCTGCCCGCACCCC	ref_3143_upstream	216	186	288	233	206	236	199	217	209	213
GGTCTTTTTTGGTGTA	ref_3143_upstream	110	96	109	108	79	96	82	93	79	76
CAAGGGTCTCTTTACT	ref_3143_upstream	1	2	2	2	1	2	2	3	1	4
AATCCTCTTTTCTTCG	ref_3143_upstream	72	51	80	76	48	65	49	48	52	75
GCACTTACTCACGGCG	ref_3143_upstream	3	2	2	0	0	2	4	2	1	1
GTTCTCCGGTCAGGTG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGCCGTTTGAGTA	ref_3143_upstream	16	21	28	15	19	17	14	17	14	14
TACCAGGCCCTTTACT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTTACAGTTTCGTCCC	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTGGTAATGACT	ref_3143_upstream	17	14	32	18	15	20	11	19	16	16
TACCGACAGTACTTTA	ref_3143_upstream	32	24	43	36	30	31	25	35	29	33
TGCGTCTTATAGAGAC	ref_3143_upstream	5	7	9	4	5	7	2	2	4	7
GCCGATTAGTCTGATA	ref_3143_upstream	56	74	94	86	77	53	78	66	77	60
TAGAGCTTATATAGAA	ref_3143_upstream	15	14	14	11	9	7	21	7	5	13
CCACGCAATGTTTCTG	ref_3143_upstream	22	38	43	37	31	36	24	43	35	36
ATCTTTGCATCAATCA	ref_3143_upstream	9	8	7	7	8	7	8	5	10	5
ACCAGGCTTTATTTCG	ref_3143_upstream	43	57	55	43	60	36	57	47	68	45
TATCTCTCGCGGGATC	ref_3143_upstream	53	34	85	56	49	76	36	53	34	57
AAGCCCCGGATTTTAT	ref_3143_upstream	32	19	33	37	29	29	18	39	26	37
TACTAGCGGTGCACCG	ref_3143_upstream	15	17	20	15	12	20	10	18	16	14
GTCAAAATCTACCGCA	ref_3143_upstream	8	14	13	13	16	15	13	15	23	12
TACTCTTATGCGTTCT	ref_3143_upstream	127	96	161	120	84	118	78	121	98	128
CTGTACTGGGCTTTGA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
GTACTCAGTGTATTCG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCCTTGGTCCTGC	ref_3143_upstream	16	29	41	23	14	21	25	28	27	30
CGAGTTAAGGGGACCA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTCACTGTATCAT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TATATTACACAAGGCT	ref_3143_upstream	25	37	38	21	26	32	30	23	33	21
CACTTACATGTGTGCA	ref_3143_upstream	49	41	54	45	29	44	41	44	37	49
TTGATTATTAGTGATC	ref_3143_upstream	16	20	33	41	16	20	22	17	18	23
TTGCTAAGGGCAGGAT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CTCATACATCTCGATA	ref_3143_upstream	36	29	40	32	43	22	40	44	31	39
CTGGGTGTTTAGTTTT	ref_3143_upstream	4	11	13	4	7	9	8	9	12	8
AGAAAGCTCCGAATTC	ref_3143_upstream	66	48	70	75	42	63	53	74	50	62
TTATAGGCCGCTTCGG	ref_3143_upstream	218	166	261	216	150	194	180	218	170	216
ATTGATTCACTTTCGG	ref_3143_upstream	24	18	33	30	13	20	19	24	17	14
ACGATATCCTGTTGAA	ref_3143_upstream	12	7	13	13	13	10	10	7	11	9
CAAATCGGAAAGCTCT	ref_3143_upstream	84	75	105	102	64	96	68	77	78	82
AGGTCGTAATAATATC	ref_3143_upstream	22	18	20	22	20	24	20	23	17	15
ATGTCCGACGACGCTG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTTAGAGCGTTC	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
AACTTTTTCTACGCTA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGATTAGGACGTGCCG	ref_3143_upstream	112	82	162	147	122	136	127	109	123	118
AGGCTCTTGTTTAAAT	ref_3143_upstream	57	46	91	65	49	57	44	65	43	57
GCTGCAGGACGGTTCC	ref_3143_upstream	27	16	26	17	13	24	17	15	30	19
TTATCTTCTTGCGCCG	ref_3143_upstream	65	44	84	60	55	54	49	68	48	63
GGTACTCTTTTCCGGT	ref_3143_upstream	22	15	11	12	15	11	10	14	10	24
TGTGAGTTTATTTTCG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTAGCCGACCTA	ref_3143_upstream	27	18	40	29	26	25	30	30	30	26
CCACACTTTCTGGTAG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCCGTTCGTCCTC	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
AGAGAATACGATGCTT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
GATGTAGTAGGATCTT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCTGGTACCCTCC	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCACGTAGGCGCT	ref_3143_upstream	6	19	10	1	13	10	13	5	14	3
AAAAAAGCGTTTACAG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTTCAGAATAAA	ref_3143_upstream	9	2	8	5	8	6	6	3	2	2
GCAGCGGATCGCAGAT	ref_3143_upstream	164	133	240	215	164	192	158	184	163	160
GAGAATGTCTATGTTG	ref_3143_upstream	8	13	7	7	8	7	9	8	6	6
AGATAATCGTGTATGG	ref_3143_upstream	73	46	100	70	65	65	64	62	68	56
AGGATGATTGCCGTAT	ref_3143_upstream	69	59	90	73	55	83	74	81	66	81
CAGAGTCAGCGTAAGC	ref_3143_upstream	13	9	28	19	24	13	14	19	23	12
AATCAAGCGTTCAATC	ref_3143_upstream	28	25	49	29	21	36	20	25	33	33
TCTTGAGGTCTAGAAC	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTCGTTCCGGTCC	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTAACTCGGGTAG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTACATCACTTCGTAA	ref_3143_upstream	57	38	53	62	53	58	41	54	54	55
GTATGCATCCGTCGCC	ref_3143_upstream	26	15	23	17	18	19	18	18	23	15
AAGTTGAATAGTGGAC	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CCTACGTTGGTGTATG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTGGATGGATATT	ref_3143_upstream	22	11	30	18	10	11	23	19	11	22
CTCATTCTCCCGTTTG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
ACACGTTCCATTTATT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
ACACTTCTAATCTTGG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGGGTTGGCGTCT	ref_3143_upstream	23	30	27	21	14	23	28	14	20	18
CTGGTGACCGCGCAAT	ref_3143_upstream	81	55	93	86	60	85	66	88	77	69
CATTAGCAGAGAGGTT	ref_3143_upstream	0	1	0	0	1	0	0	2	0	0
CCACGACTCCGCCAGA	ref_3143_upstream	31	22	44	39	27	26	20	37	20	24
ACCGCCCTTCTCATAA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTATTGCAAGCTT	ref_3143_upstream	15	34	23	21	34	14	43	32	26	29
TGTGGAATGTATCTAT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TTGACATCATCGACGG	ref_3143_upstream	62	34	62	74	52	49	48	61	52	48
GTGCAGTCGGACGCCT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TAAATCGAGGTTAGTA	ref_3143_upstream	103	99	117	109	95	111	92	105	106	79
AGTTGTCGAAATTTTT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CAAACACAATCGGTGA	ref_3143_upstream	54	51	75	74	42	53	55	54	67	40
AGCACTTAAGTTGTTG	ref_3143_upstream	33	22	51	42	24	18	23	33	27	21
TGCTTGATAATAGGCC	ref_3143_upstream	104	67	105	85	61	99	90	71	74	82
TTATAGTGCATTGCTA	ref_3143_upstream	45	36	45	34	32	37	32	44	48	36
CCGGAATAAAGTTGTG	ref_3143_upstream	8	25	13	18	22	20	33	21	33	9
ACTATATTTTAGGGTC	ref_3143_upstream	119	100	145	136	116	119	111	91	85	96
CCTGGATCTCCCCTGT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCTCTGCCCAACG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TCGTACCGAGTGTTTA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTACCGTGTCTAG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCTTCGATCGGAA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CATCCTCGTTACTTTC	ref_3143_upstream	31	13	26	23	18	16	11	18	13	17
TCGAGTTCGACCTATG	ref_3143_upstream	39	41	63	44	47	37	49	50	47	65
CCGGGTATGTGTTTGT	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
GGTATGCGAATAGGTC	ref_3143_upstream	31	41	47	38	28	40	40	34	30	35
GTTTTGATATTCGAGA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
AATACCATGGTCCCCG	ref_3143_upstream	27	20	31	19	13	17	13	21	15	22
GACATTATATTCAGTA	ref_3143_upstream	9	1	5	3	5	6	7	7	1	3
TGTCAAATTAGTATTC	ref_3143_upstream	57	61	78	70	58	82	72	75	55	73
ACCGACCTTCTCATAA	ref_3143_upstream	65	81	84	89	84	66	91	47	79	63
AGTAAGGGATAAATGA	ref_3143_upstream	43	24	33	18	15	30	21	21	15	14
TTAAGTTTGGCTTTTT	ref_3143_upstream	76	42	92	80	45	76	43	62	46	60
ACCTGTTAGCTGCTAG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CTAATGCACGATGTGC	ref_3143_upstream	53	60	73	52	50	58	70	45	65	54
AGCACTCGTTATGTAC	ref_3143_upstream	10	10	14	14	10	12	10	14	11	9
CTCTTCTAAAACTGGG	ref_3143_upstream	115	80	130	130	78	104	98	119	126	103
CTCGATTCTGGATGAA	ref_3143_upstream	34	30	57	42	51	34	42	38	37	40
CGCTTAATTATGCTTG	ref_3143_upstream	55	42	51	30	34	46	39	33	60	51
CCGCCATTCCTCTTCA	ref_3143_upstream	52	50	71	66	49	59	63	44	62	50
TGCCTTCTTTGGATGT	ref_3143_upstream	24	25	28	25	21	26	19	39	24	20
CTAAGTTCTGCTTCAA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
TGCACGCTCCGGCATG	ref_3143_upstream	22	18	38	20	17	15	17	20	14	14
GATGGGAGGAAATGCT	ref_3143_upstream	35	42	44	22	20	26	30	36	24	28
GAATCGGTCCATTAGG	ref_3143_upstream	70	54	79	63	54	52	46	55	51	56
CATGACGTACTTCAAG	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCGACCCCCATCA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
GACTAACGTTGCATTC	ref_3143_upstream	9	7	9	10	3	12	2	2	4	6
TAGCATGTGTTAAGCA	ref_3143_upstream	92	54	106	99	58	102	73	84	77	69
CACGGACAGTCACCCC	ref_3143_upstream	123	78	122	99	87	94	88	95	86	86
CTGTGGTTCCAAGCTT	ref_3143_upstream	7	4	4	3	5	16	7	8	4	5
AGTCGCAAGTGGGTTC	ref_3143_upstream	33	57	40	39	39	46	48	48	45	41
TTCCTACTTAATCGTG	ref_3143_upstream	14	16	25	15	13	16	11	13	12	12
GTGTGCTTGTTAGGAA	ref_3143_upstream	0	0	0	0	0	0	0	0	0	0
ATAATCTTACTGGGTC	ref_3143_upstream	11	15	13	14	9	17	15	10	10	14
CCGCATTAAGCCGTGT	ref_3143_upstream	5	4	8	16	6	8	15	6	9	15
TTTCTCGCCTTGCGAC	ref_2542_missing	5	11	9	7	9	10	15	8	2	12
GTATTAATCATAAGGT	ref_2542_missing	1	6	4	1	4	4	1	1	1	1
TCCAGGACTTTATTGC	ref_2542_missing	7	9	5	4	8	2	7	7	6	6
TTGTCCAAGCCCGACC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
CGCATCACAGGTGTTC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
AGGCATGGACTCACAA	ref_2542_missing	3	7	4	2	6	6	5	1	6	6
GGTTATTGAGTTACCC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTAGATCTCGTA	ref_2542_missing	16	12	27	18	23	14	28	22	21	9
GGGTAGTTTGGTCAGG	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TGGTCATTTTTGAACT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TCTATGAATTGGTGTC	ref_2542_missing	1	6	2	2	0	3	0	4	0	2
ACCGGCGCCAGCCCGG	ref_2542_missing	0	1	0	1	0	0	0	1	0	0
TATTCAGGGACGCCCC	ref_2542_missing	7	5	3	2	8	3	5	3	3	7
AGTCGAAATCTCTCGC	ref_2542_missing	18	25	23	30	34	34	37	20	31	23
CTTCCAGTAGACCAAG	ref_2542_missing	11	17	26	12	17	16	26	15	19	9
TAATGTCGGAGGCAAT	ref_2542_missing	20	15	15	12	20	11	15	15	15	21
GCAATTAAACATACCA	ref_2542_missing	10	7	9	14	9	7	5	7	13	3
TTCAATCAGATACAAG	ref_2542_missing	20	28	16	13	34	13	28	19	26	24
TGAATATAGGCATGGC	ref_2542_missing	34	31	43	18	39	29	26	23	34	24
GGCTAACGAGACGAGA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
AATATGATTTTATCCA	ref_2542_missing	7	6	3	5	8	2	12	3	9	3
GATTGCCTACTCGTCG	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
CCTGGTTCATATACGG	ref_2542_missing	23	28	21	16	32	23	36	19	35	12
TGGCCTTGCAGGTATC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TATTTTTGACTTGCTG	alt_2542_missing	3	3	0	2	1	1	5	0	1	2
TCCGGGCCCTAATCAC	ref_2542_missing	7	12	16	12	8	8	14	15	12	8
TTATCCTAAGATTACG	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTGGGGCTTCGT	ref_2542_missing	5	14	8	6	16	10	11	11	11	7
GGATCTTTAATAACTC	ref_2542_missing	3	13	8	4	4	2	6	4	8	4
TTAGAGTACTTAATCT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TGGTCTAGTACTGTGC	ref_2542_missing	1	0	0	1	1	0	1	1	1	0
TACCCATTGTCTCTGT	ref_2542_missing	1	7	6	2	2	2	3	1	6	4
AAACGGACGTGTTCCA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TCTAATTGTAACACTT	ref_2542_missing	10	6	10	6	14	5	13	7	13	14
GTAGAAAACGCAAATT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
AGTCTCCAATTGGGCA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
CTCCATCGTAACTTTA	ref_2542_missing	1	6	3	2	3	1	7	0	8	1
GAAATAAGGGAGCAAA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TTACTCAGTTTGTCAG	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TGGTGGTCATTGAGAA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TGTGCTGTCCTGTAAT	ref_2542_missing	8	14	15	7	23	5	12	17	17	9
CAAACTCTCATCGCAA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
GCCGAAGCGGTTTGCA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TAGTGGAGGATTTAGT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TACAGAGCGGTTTTAC	ref_2542_missing	13	8	11	11	5	6	13	8	13	7
TGTTCTGATCTATGGT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
GTAAGGAGTCACCTGA	ref_2542_missing	1	4	5	15	1	2	6	4	5	4
AGTCGCTCAATCGAAC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TCCGTAGCGCTGTGAC	ref_2542_missing	5	6	10	5	4	2	8	8	5	5
TTTTACGGGGTATGAT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
ACTTACATGGTATTTG	ref_2542_missing	4	10	5	3	4	7	6	3	13	2
CTCTTGTGGGTGATTT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
CACTTCTTGGTGTAGG	ref_2542_missing	60	68	61	60	76	52	51	55	70	67
GTAATAACGCAATTAT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
GCCTTGGCGTGCTCAC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
GACTACCAGCCTGACT	ref_2542_missing	6	8	4	1	0	2	1	4	6	1
GGCATAGATGCGACAT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
CTTGTAGATTCCGGGT	ref_2542_missing	5	3	5	3	5	9	5	5	16	8
TTTCTTTGTTGTCGCT	ref_2542_missing	0	0	0	0	2	2	1	1	0	0
TTTCATGCATTCGTCC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
AATGTCTGGTCTCGGC	ref_2542_missing	8	2	2	0	4	3	4	5	5	4
TTTAATGATGAGTATG	ref_2542_missing	5	4	7	10	8	5	7	3	3	3
TTCTTATATTGCAATT	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
GCCTAAGCGCTCATCA	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
CCTGAGGCACTGCCGT	ref_2542_missing	8	11	10	7	9	6	9	12	16	4
GTCCGCTTAACTACTA	ref_2542_missing	2	6	2	5	4	2	7	4	11	1
CATGATGGCTTTCTCT	ref_2542_missing	13	10	12	11	14	15	27	18	13	17
CTGGTCCAGCACCTCC	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
GCCTCGCTAAGTTCGC	ref_2542_missing	4	0	5	1	0	1	0	2	1	3
GTGGTCTCCGCCATAG	ref_2542_missing	5	11	17	14	14	15	15	8	15	7
ACGTCTGTACATTACA	ref_2542_missing	12	15	16	10	13	17	13	12	26	10
TTTTTCAACGCTTGAG	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
ATAGACGGCAAGAACG	ref_2542_missing	0	0	0	0	0	0	0	0	0	0
TCATGTTACAACGCAC	ref_2542_missing	31	51	32	40	31	15	33	29	53	27
ACTATGTCTTGTCTTC	ref_2542_missing	23	23	17	13	25	22	14	24	9	20
GCGATTTGCTGGGTGC	ref_2542_missing	3	6	8	7	12	2	11	8	11	1
TTATTATACATTACAA	ref_2542_missing	2	8	3	3	2	5	2	3	1	1
TTTCTCGATATCCCCA	ref_2542_missing	0	4	2	2	1	3	3	3	0	4
TCCGCCCTCGTAGACC	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTGTATCGGCGCGAAC	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCGGGCTCCCTGA	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
CGATGTGCCTAGCATT	ref_5092_fdr	416	479	499	420	537	468	543	428	541	415
TTGTCGTAGGATGGTG	ref_5092_fdr	29	23	25	15	28	22	23	19	25	22
ATGCTTCACGTGTTTG	ref_5092_fdr	7	6	12	4	7	8	6	12	4	11
GGTCTCGGAATCCGAA	ref_5092_fdr	46	53	57	44	54	46	40	57	51	49
ACAGTGAATAGGATCA	ref_5092_fdr	7	14	17	14	10	8	12	3	19	5
AAGCAGTGGATCATTC	ref_5092_fdr	107	134	132	124	119	97	129	92	132	121
TCGCAAGGATCGTTAA	ref_5092_fdr	117	93	126	84	123	86	116	85	120	84
TACATTCGCGCGTGGG	ref_5092_fdr	14	14	9	13	14	14	13	11	23	11
ATATCGCATGACGGAT	ref_5092_fdr	66	65	69	60	48	63	58	64	68	58
TCTACACGCTAGTGTG	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCAAGTACGTGGA	ref_5092_fdr	200	207	227	213	201	160	211	162	190	167
CCCTTAGTTTACTATG	ref_5092_fdr	11	9	8	5	8	5	2	7	8	9
ACGCCCCGTATTCGTG	ref_5092_fdr	44	80	53	47	73	44	70	47	66	37
TTAACTGCCGGGTCAC	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
ACAGAGGATGATACCT	ref_5092_fdr	75	68	89	53	72	60	107	77	101	62
TATCACTTATACTGTA	ref_5092_fdr	42	38	45	35	41	38	54	28	53	28
CTACGGAAAAAGCGTC	ref_5092_fdr	16	17	27	37	29	20	21	24	26	21
TACAGCTATTTATGGT	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGATGCGTTGTAC	ref_5092_fdr	34	43	47	38	36	42	50	29	38	34
CATGGTGTTGAGGGAC	ref_5092_fdr	35	28	41	24	32	23	27	26	17	25
TTGTGCTCTGTGTTAA	ref_5092_fdr	25	51	50	36	55	30	53	30	46	32
CAGATCATACGTCGTT	ref_5092_fdr	37	34	44	35	59	33	53	21	55	31
AATCTCGTCTCTTACA	ref_5092_fdr	33	29	33	30	27	19	22	23	34	22
AAGGCGTGCCCGGTTA	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
TCGATCGTACGTCTTG	ref_5092_fdr	8	28	26	23	26	20	23	27	19	25
TATCACATCAGTGTCT	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
CATAGCTCTACCTCGT	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGCGTCATTGGCT	ref_5092_fdr	33	62	48	59	40	49	41	51	67	34
GCACGTCACTTGATAA	ref_5092_fdr	34	27	38	21	23	24	23	20	23	32
GTTTATTCTCAGGACA	ref_5092_fdr	10	18	13	11	10	7	23	11	9	6
AGAATTGACACGCCTT	ref_5092_fdr	28	33	36	34	46	28	33	24	45	29
CCGTTCATGAACATAG	ref_5092_fdr	2	2	2	5	6	2	3	2	3	1
GCCTCCTATGGCTCTC	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
CTTACGTGGTAGGTAG	ref_5092_fdr	47	49	50	33	49	57	45	39	38	42
CTGTACATTTAAGTAC	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTAGTCCCGTAAG	ref_5092_fdr	23	44	37	24	42	31	24	26	57	41
GCGTTGCTGGGCTGCT	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCAGAGAATCAGG	ref_5092_fdr	43	45	61	20	45	38	60	59	43	43
GGGATGTTCCTGCTAT	ref_5092_fdr	18	16	27	19	17	12	26	12	21	13
GTATCTGTCTATTAGT	ref_5092_fdr	4	3	4	1	7	3	1	3	2	3
TAGCGGTCAGGTCAGA	ref_5092_fdr	54	55	80	45	64	60	77	54	67	47
CAGCCGTTTTGTTCAA	ref_5092_fdr	13	48	13	8	37	15	57	12	57	9
GACCTATAACAATTTC	ref_5092_fdr	68	73	79	61	82	73	80	70	59	48
ATTAATCGTATTCTCC	ref_5092_fdr	18	36	23	22	18	19	6	19	25	16
CTAGCAGGGCATGGTG	ref_5092_fdr	33	32	42	26	40	52	41	34	36	30
GAAGTGCTGTTATCAA	ref_5092_fdr	20	16	39	20	26	21	15	25	28	21
GATAGTACAGACATAC	ref_5092_fdr	4	21	12	8	22	16	7	15	17	5
GAGGGTTTAAGCGAGC	ref_5092_fdr	45	46	43	41	35	45	33	22	51	41
TGCGGATGTCCCTCTT	ref_5092_fdr	58	33	55	39	33	40	28	27	36	26
GGTAGTCAGTCGCGCA	ref_5092_fdr	64	58	80	66	63	50	54	59	51	55
AATAGAAAGTTTGATT	ref_5092_fdr	13	13	22	10	23	7	13	9	12	12
CCGGATCATGTCGCGC	ref_5092_fdr	56	65	83	73	82	56	72	66	66	62
GACGCACACTCCGGCT	ref_5092_fdr	31	96	38	23	108	26	118	20	97	24
TTCACCGCTGCCACAT	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
CTATTGGAACGGCTAT	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
ATTATGTTTGGACTTT	ref_5092_fdr	19	29	34	29	31	24	40	20	36	21
GGTGCCGGTTATGGTA	ref_5092_fdr	40	56	59	46	47	55	48	38	48	40
TGTAGTTGAAGTAGGT	ref_5092_fdr	80	80	110	80	75	91	49	74	102	66
GACATTTAGTTTTGCA	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
TTCTATAACCAGCTGC	ref_5092_fdr	20	25	23	20	22	22	24	17	21	28
GGAACTCAGCGGCCTT	ref_5092_fdr	44	32	43	33	42	31	29	28	41	39
GTCCTTATCATTGGGT	ref_5092_fdr	37	36	46	30	26	27	25	29	37	23
TGGCTGCTCCATGTGG	ref_5092_fdr	24	18	19	15	17	12	11	13	7	10
CTTGGCGTTGGGCTGT	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
GCCCACCCCGGCATTG	ref_5092_fdr	21	12	16	20	19	20	20	25	20	26
TATGGAGCGGCAGCAA	ref_5092_fdr	23	20	33	19	21	16	23	22	24	25
TAATATAAGATTGGTA	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCACTCCTCGATA	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
TACAACCTTAATTATA	ref_5092_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTGGTCCGTACG	ref_5092_fdr	263	266	327	212	257	252	313	178	316	245
TGGTATGCGACAGCGT	ref_5092_fdr	3	0	2	3	0	0	0	2	1	0
AAACTACATAGCTGTT	alt_6009_new	45	69	41	48	60	37	41	33	73	36
TATGTAGCCCTCCCGT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TCTTTGAATTCATCAA	alt_6009_new	19	24	26	15	29	19	23	20	30	21
ACCATGGGATTATTAA	alt_6009_new	4	0	0	3	0	2	4	2	2	1
CTAAGATTATTTCAAG	alt_6009_new	14	19	14	11	22	13	16	7	16	11
GGGCTGGTGTTTTCCT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TCTTACACCACCCTTC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GTTATACTGACGTTTT	alt_6009_new	60	79	53	58	85	54	92	51	77	64
CGGAGTCTTTTGGTCT	alt_6009_new	12	15	9	16	19	20	27	19	16	12
TTACAATCTAGACACG	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TTCACGACGAATTAGC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TCGCGCGTAGCTCTCA	alt_6009_new	14	29	29	18	43	28	33	16	40	16
TTTGTAAGATATGCAT	alt_6009_new	45	98	74	57	94	53	92	59	100	48
CCGCCTAGTTGACAAA	alt_6009_new	25	36	19	20	46	15	47	28	53	12
TAACCGCGTGGTTCTA	alt_6009_new	130	179	148	134	216	116	186	147	220	136
GTATAAGCGCTGCCGC	alt_6009_new	90	103	130	106	97	84	116	106	132	91
CCGGACTGTATAACCT	alt_6009_new	2	7	5	5	6	0	15	2	11	0
ACCAGCGCGCACACCA	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CCACGTATAGCGCCAA	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GCATGAACTATCACAA	alt_6009_new	36	50	55	50	56	47	66	45	68	48
GTGTCAAATATAAGGG	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TAAATTCACCTACCTG	alt_6009_new	5	41	2	1	32	3	34	2	35	4
CGCGCTTGGTCCCGGT	alt_6009_new	81	110	100	110	97	73	108	95	116	72
CCTACAATTGATTCAT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
ACAAACCAGTTTGGGA	alt_6009_new	17	29	24	29	28	17	39	14	46	13
TTGTATGCAATACAAC	alt_6009_new	12	31	27	27	34	20	27	30	30	35
GTGTATGGGCCTCTTC	alt_6009_new	32	48	53	29	64	50	59	37	54	42
GCCTTCATCTCATGAT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CGTGCGATCTTCGGGC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CTCAGCCCCATAATTA	alt_6009_new	0	0	0	1	0	0	0	0	0	0
GTATAGTCTGGCCCTA	alt_6009_new	7	3	3	5	6	4	8	0	6	6
TCACCTTACGACGCAC	alt_6009_new	1	4	4	1	2	1	5	1	9	4
GATTGACTTATTTTCG	alt_6009_new	118	157	141	104	148	117	185	106	180	90
GGGTATCTTAACGCTT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GAGGGTTACGCTATTT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TTCGATCAGGGGTTGG	alt_6009_new	1	12	10	8	10	6	13	3	20	1
GTCTTCGTCCAGTCCT	alt_6009_new	43	94	71	73	97	63	108	62	101	57
CGAGATCAGTGTTGCC	alt_6009_new	7	3	8	6	9	5	4	8	9	2
TCACAGATTTCATCTA	alt_6009_new	25	30	31	23	34	29	41	26	23	29
CTTAAGGTTCGTTACG	alt_6009_new	0	0	0	0	0	0	0	0	0	0
AACATCTGGTTTGGGT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CACCGTTATCGTAACG	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TCATCATTGGGTCGGA	alt_6009_new	8	10	17	10	9	9	12	10	12	8
CTCTACACCCGCAGGC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TATCTGGGGGTTTTCG	alt_6009_new	6	8	5	4	10	5	7	7	7	5
ACATAGGCCTCGCTTC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GGATGAGTATCTTTAT	alt_6009_new	19	43	24	13	32	36	42	28	34	26
CCATATAAGTCTCTCA	alt_6009_new	9	12	10	15	16	6	15	7	6	8
CGTTGAGAACTCAGAC	alt_6009_new	19	36	19	23	29	28	39	19	39	13
TTGCTGGTAAGTCTTG	alt_6009_new	36	45	58	36	57	40	59	39	44	24
TCGTCCCTGATTGCGA	alt_6009_new	15	15	19	10	18	6	18	6	19	4
TTGCCTAACAGTAAAC	alt_6009_new	13	24	20	11	16	10	23	9	24	15
TAACGATGTTGGGTTA	alt_6009_new	11	12	3	8	8	3	4	6	4	9
TCTGAAGGACACCAGG	alt_6009_new	4	1	5	7	5	0	7	0	5	2
CGGCTACACCTTGCCG	alt_6009_new	5	6	9	11	23	10	10	5	10	8
CGTCCCTCACGCCCAT	alt_6009_new	33	44	41	34	56	36	69	27	65	25
TCTGATTGTTCTGTTA	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TTTCATGGAGCGAATC	alt_6009_new	11	16	11	18	5	13	12	4	21	8
GTGAGTTCTCTTATGT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
ACCTCAATGAGATACA	alt_6009_new	16	31	23	19	32	12	22	12	29	14
GCGTCTATCAGACGTA	alt_6009_new	46	54	46	60	62	38	59	34	58	21
CTCCCAGCCTTCTTAT	alt_6009_new	37	59	44	45	93	31	73	34	86	34
TCAAGTTCGGTATCAA	alt_6009_new	9	10	11	4	8	4	5	9	14	7
GTAGGAATATTTTGTC	alt_6009_new	2	2	1	0	2	3	4	2	3	2
AAACTCTGACTTGGTA	alt_6009_new	7	19	9	5	8	8	10	6	11	5
GCATGAACGGATGTCA	alt_6009_new	0	2	0	2	3	0	2	1	0	3
TAAGGGCTTACACACT	alt_6009_new	20	12	17	16	23	19	18	18	21	10
AGTTATAATAATACAC	alt_6009_new	10	7	8	8	6	5	14	4	11	9
TGGGCACGTAAGCCAT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GTTCGCCTACGGTCTT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GGTGTTAAATTTTTGC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CGTGCATCCCTAATGG	alt_6009_new	4	3	6	4	9	4	11	5	8	3
TCTAGGGAGGAGATGG	alt_6009_new	4	9	5	4	2	6	7	5	6	6
AACCGTTTGTTAATTT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CGTCTTCTCTTTAATT	alt_6009_new	121	145	152	109	169	117	189	123	161	89
CTTTTACGAGTGGCAG	alt_6009_new	2	5	5	2	4	3	3	0	3	5
CATGCTTCGTTATCAC	alt_6009_new	7	11	11	6	9	6	6	1	3	4
CGTGATGTGACGTGGG	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TCGCATCCGAATGCCG	alt_6009_new	70	98	91	70	91	62	91	71	96	54
TACATGTTTGATGCCA	alt_6009_new	25	46	43	28	39	38	33	24	53	32
GTCTCCGCTCTCGCAT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GTTCGTGGTGGTACGG	alt_6009_new	24	19	18	16	39	23	30	23	31	19
CTCCTTCTGTCTAGAA	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CTAACCTTGCCTCTGC	alt_6009_new	17	35	35	21	27	41	33	23	43	29
ATTGTCTTACTAATGG	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GGAAGAAGCCGAATAC	alt_6009_new	13	13	17	7	8	13	8	10	16	5
ATTGTAAACTGTACAC	alt_6009_new	48	70	54	50	78	36	73	50	79	34
ACTCATTGCACGCTCG	alt_6009_new	3	6	3	2	0	1	3	0	5	4
TTGCATTATTTTTGTT	alt_6009_new	3	7	3	5	7	1	7	3	3	4
GGCTTGGTGCTCTATC	alt_6009_new	54	110	80	67	109	73	85	61	127	57
AGAAGCTCGCCGAGAT	alt_6009_new	1	2	0	3	3	1	0	0	0	2
TCAGCTCTAGGTCGTC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TGAACCTCCCCACAAG	alt_6009_new	21	41	39	32	42	23	46	23	53	23
CTATTCGGCCCGTTTC	alt_6009_new	38	55	55	65	77	29	83	56	54	55
ATCGATGGTCCGGTCA	alt_6009_new	11	15	12	15	21	11	21	7	13	11
TTGGCTCGGCCGACAT	alt_6009_new	8	12	11	8	11	12	8	9	13	12
GTGTATTTAGATTCGG	alt_6009_new	12	37	29	22	29	15	21	18	38	27
CTGAGATGTCAGAGTT	alt_6009_new	36	41	33	41	36	27	47	35	48	32
GCCACAGGTCCAACGA	alt_6009_new	33	41	24	15	44	22	34	24	48	21
TCCGTCTTTGGCCATA	alt_6009_new	3	6	1	5	5	4	7	1	12	4
CTAGAGTATTTAGGCT	alt_6009_new	16	18	28	6	24	17	25	10	23	19
CATGTTCGGACGTGGG	alt_6009_new	11	27	15	17	13	14	29	20	12	13
AATCTTGGTACATCTA	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TATCATGATTCTTATA	alt_6009_new	5	9	8	6	9	6	13	7	12	5
CTTTGCAGGAAAGAGA	alt_6009_new	51	72	56	45	63	51	59	37	56	42
CCCAATATCTGTCTTC	alt_6009_new	0	1	0	0	3	0	0	0	1	0
GCCTGCAGAGCGCTTA	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TATAGCCAAGACTTGT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
CCACTCTATGGGAAGT	alt_6009_new	38	58	51	52	62	44	67	47	77	31
AAAATATTTTTTGATC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TGAGATTGCTCCTAAC	alt_6009_new	0	0	0	0	0	0	0	0	0	0
TTGCTTAGGATCTTAT	alt_6009_new	43	59	55	42	51	34	68	37	68	34
CTTGGAGTATCAGCGT	alt_6009_new	0	0	0	0	0	0	0	0	0	0
GTGTGCCCGCGCTATA	ref_4079_fdr	54	43	70	51	31	37	29	46	35	52
TTAGCCTCCCCCCTGT	ref_4079_fdr	56	51	76	54	37	50	43	67	50	51
TTCTATACCCAGTGAC	ref_4079_fdr	7	0	0	3	3	1	0	0	0	4
TTTGGTTAGATTATGG	ref_4079_fdr	23	13	31	22	6	18	18	27	11	16
AGTACTTTCTGGATTA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
GAATTTCCCGTACAGC	ref_4079_fdr	35	22	52	43	33	40	46	30	43	45
TTAAGGCAACTGAGGA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCTGGCTGCTCC	ref_4079_fdr	3	2	9	2	3	2	4	2	1	0
TGGAGACGAGCGGGAC	ref_4079_fdr	33	15	37	27	17	29	18	26	22	19
TGTGGCCGGATACTGG	ref_4079_fdr	52	54	59	59	49	45	39	45	50	45
TTTCTAAATGCGGTGT	ref_4079_fdr	111	82	85	88	70	76	76	82	65	74
CGATACCTGGTTCTCG	ref_4079_fdr	27	22	32	31	32	17	20	30	24	20
CTAGCTGTCATGTATA	ref_4079_fdr	5	3	8	13	14	11	14	4	7	8
TGAGCTGACCGGACAT	ref_4079_fdr	47	33	60	75	36	47	41	56	51	33
ATAACTATTGAGATAT	ref_4079_fdr	33	37	41	40	29	33	25	31	31	33
CGGTTGTGATATTTGA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGTCTAGGGCACT	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCGCAACAAGTTG	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
TCAGATTGCTCAGTAT	ref_4079_fdr	21	19	26	17	24	31	19	22	22	25
TGCAACCGTTTCCCTT	ref_4079_fdr	7	15	10	7	7	10	11	9	6	4
ACGCGCGCCGTAGCCG	ref_4079_fdr	4	1	3	1	1	2	2	4	2	4
TCGCGCTGGAGTGGCA	ref_4079_fdr	95	67	92	95	78	108	62	78	82	75
GCGCTCGTAGGGCCGC	ref_4079_fdr	166	113	164	153	110	147	91	149	101	156
GATCTGTTCCAAGGCC	ref_4079_fdr	9	3	5	5	3	6	8	8	3	4
TGAGGAACCCTCCATC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
ACAGCATGCCTGTGTT	ref_4079_fdr	14	28	29	20	20	24	23	18	19	27
TCGAGCAGCATACTCT	ref_4079_fdr	13	21	24	16	26	21	21	6	22	20
TTCAAGGGCATTGCCT	ref_4079_fdr	28	15	26	20	14	32	31	12	20	25
TATGTCCCAAAGGTGT	ref_4079_fdr	105	73	110	109	63	70	72	58	84	66
TTAAGACAACTGAGGA	alt_4079_fdr	264	263	402	350	229	304	227	299	228	318
CGTTTTATCAAGAGAA	ref_4079_fdr	93	70	112	91	82	115	73	99	84	85
TGGTATATGTTTTATG	ref_4079_fdr	1	8	13	6	10	3	1	6	3	4
TGAACGAGCGTTCCTG	ref_4079_fdr	15	5	11	10	8	12	19	9	13	13
TTCATCCCCCCCAAGA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGTTTTACGGGCG	ref_4079_fdr	27	13	37	31	23	30	24	41	20	34
CGCGGTTACGGCAGTC	ref_4079_fdr	70	57	80	67	42	66	35	66	41	65
GGCCCGACATGCACCA	ref_4079_fdr	51	46	47	60	44	71	55	58	53	72
GGCGTATCTCTACAGA	ref_4079_fdr	33	24	56	36	31	43	40	32	30	43
GAATCGGCCTCAGGGG	ref_4079_fdr	24	18	31	33	20	31	15	15	18	19
CATGTCTACGTATGTA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
GAACGGGCACCTGTCC	ref_4079_fdr	32	21	28	20	6	18	24	13	15	24
TCGACTGGTCAAAGAC	ref_4079_fdr	100	134	114	87	115	95	118	79	121	85
GGGTGCGCAGAGCCTC	ref_4079_fdr	15	11	31	20	8	15	13	24	7	21
CCAGGGCAGTGGCTGT	ref_4079_fdr	13	17	31	18	19	21	17	20	23	19
TTGTAGGCAGAATAGT	ref_4079_fdr	56	34	64	55	48	57	33	59	39	43
TATTACGTGGACGAAG	ref_4079_fdr	143	87	161	126	94	108	121	110	80	118
CCGATTGAGAAGCGGC	ref_4079_fdr	36	24	42	24	17	19	24	24	23	33
AACTCCCCGTAGGTTT	ref_4079_fdr	2	56	7	2	48	2	58	3	52	0
ATTCACGCTTTAGTAA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGTCAAACCAATT	ref_4079_fdr	8	17	5	5	12	6	17	6	21	6
CGTCCAGCATAGCATC	ref_4079_fdr	36	38	76	56	37	48	36	48	36	49
AATTTCCCTTAGTAAG	ref_4079_fdr	5	3	11	6	4	7	12	4	2	1
ATATCCGGGCGCACCA	ref_4079_fdr	16	11	24	18	17	20	21	19	21	21
AACTCGGTAGGACCGT	ref_4079_fdr	49	41	45	38	41	39	39	44	59	34
TCGGCTCTGGTATCAG	ref_4079_fdr	30	31	56	50	37	34	24	39	30	41
CTGAGTCCCAGACTTA	ref_4079_fdr	51	69	74	60	47	65	43	64	47	42
TCGCGCAACGACTCAA	ref_4079_fdr	35	28	27	44	28	43	27	30	30	38
TTTGTGTTCTCGCCTT	ref_4079_fdr	25	17	21	19	18	25	18	20	11	23
GACAACAGCTATCTTG	ref_4079_fdr	54	58	99	49	47	70	52	57	62	76
AGGACTGTTTCCACTA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCGGTTTGCTTC	ref_4079_fdr	53	39	69	55	44	72	32	60	49	48
GGTTATTAAGAGAGCC	ref_4079_fdr	33	37	31	31	34	28	13	30	22	38
CTGAGCCTCGCGTTAA	ref_4079_fdr	23	37	54	34	24	31	29	38	35	42
TCTTAACTAAGATGCA	ref_4079_fdr	81	46	72	67	69	50	51	60	47	66
ACTCTCCGTCGTTTTA	ref_4079_fdr	94	316	104	81	385	76	352	67	340	71
TGACGTGCGCGCTATT	ref_4079_fdr	37	23	36	25	20	33	41	29	25	33
GGAACGACCTGTTAGC	ref_4079_fdr	5	6	9	8	3	7	4	7	5	4
TATACCCTCGGCCATA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTGTGCGCTTAGG	ref_4079_fdr	5	7	3	2	3	4	2	4	7	7
CTTCGCTGGGCCCGAA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGGTCCAAACGAA	ref_4079_fdr	41	16	56	54	21	29	33	44	25	40
ATTAGTTCCTCATCGT	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCGCCAACCTTAA	ref_4079_fdr	11	12	23	9	14	22	14	16	7	22
TTTACTAATCTGTAAA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTTAAGGATCTCA	ref_4079_fdr	250	175	311	278	191	275	212	220	217	140
TCCCTTGACCAGATGT	ref_4079_fdr	6	13	13	6	6	6	11	10	19	3
TAGATACCAGCATCAC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCGTTAACTTCGC	ref_4079_fdr	19	20	16	21	30	13	41	13	27	18
CTGGACTCGCCAGCTC	ref_4079_fdr	3	8	10	9	8	6	7	9	7	9
AACTTCGCCATTTCGC	ref_4079_fdr	49	24	47	57	20	46	19	40	21	40
TGGACACTGACGCTGT	ref_4079_fdr	30	21	47	27	30	23	26	28	23	27
ACATGCTGAGTGGTAT	ref_4079_fdr	36	17	44	21	16	17	23	22	27	32
CTTTCTCCTTAGATCC	alt_4079_fdr	140	102	156	140	104	135	122	125	139	135
GCCTTAAAGTCAGCCG	ref_4079_fdr	26	13	27	41	17	27	26	24	15	19
GGCTGATGTAAAGACG	ref_4079_fdr	75	56	78	72	62	76	52	64	54	50
AAATTGACGACTGTCC	ref_4079_fdr	9	7	13	7	6	3	3	8	5	6
CTTTCCGTCTTGTCCC	ref_4079_fdr	8	6	18	16	14	10	12	10	9	9
TCAGATCATGCTGCTT	ref_4079_fdr	4	8	8	5	3	4	5	8	7	6
TCTCATTGTTCACCGT	ref_4079_fdr	17	22	32	21	15	20	17	23	15	14
CATGCTCTTTTTACAA	ref_4079_fdr	28	16	33	25	13	23	14	16	19	15
TCTTAATCCCTTTGAA	ref_4079_fdr	10	16	17	10	11	21	12	12	19	10
CTCCGACATCTCGCTA	ref_4079_fdr	0	0	0	0	0	0	1	0	0	0
TCAGAGTAACACAGCC	ref_4079_fdr	21	18	27	27	32	25	26	25	21	29
GCCTCCGTCCTAGCTT	ref_4079_fdr	59	73	75	92	55	64	58	73	65	64
CAGGCAAGACGCATTA	ref_4079_fdr	43	28	45	38	26	43	38	47	37	39
AACCGGGGATTGTATA	ref_4079_fdr	11	18	8	13	21	6	15	9	16	13
TCTGTCGATATATGGT	ref_4079_fdr	121	78	167	157	93	142	94	133	105	139
CCTTCTCTTCCGTTAC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTCATCATGTGCA	ref_4079_fdr	7	6	16	11	13	9	8	14	10	11
GAAAATTGTATGGCTG	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
ATATGCCCTCCAGGAT	ref_4079_fdr	11	1	17	6	3	2	3	6	4	6
AGTATAGGCCGCTCGG	ref_4079_fdr	66	45	92	63	47	68	48	81	53	72
AGACGGGTTTCAATCT	ref_4079_fdr	18	14	21	16	15	29	17	16	18	14
CGCCCGGTGACCGAAC	alt_4079_fdr	0	2	1	2	2	4	5	3	3	4
AGTCATACGGCGCAAT	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTACCGGTCTTGTCGG	ref_4079_fdr	0	0	0	0	0	1	1	0	0	1
TGCCTAGATTCGTGAT	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGGCTTGCTTTTT	ref_4079_fdr	25	9	26	21	15	19	22	23	16	24
CACTATTGCACCACCT	ref_4079_fdr	39	35	62	46	51	58	42	49	41	41
CGTACGATTAGCTCTT	ref_4079_fdr	55	53	72	65	52	49	37	69	46	57
GTTCTCGGGGGCTTAT	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
CAGGCGCGGGCACATC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
GAAGGTTCAGGAGGCG	ref_4079_fdr	4	1	6	4	5	2	3	4	4	3
TACCGTTGCCACCTAA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
ACATTCGACCACATTG	ref_4079_fdr	9	12	2	7	5	9	5	9	4	2
GCTTCAAGGTCCAGAC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
AACATGCGGCTTGATA	ref_4079_fdr	48	29	60	48	21	31	23	28	32	32
TTCGTGCACTATCTTT	ref_4079_fdr	9	7	12	11	8	9	8	15	8	9
GCGATATCAGAATCTC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
ACTCTCAGGACTCAGG	ref_4079_fdr	69	38	83	48	39	47	48	51	45	65
AGCAGTCAGCCATCTA	ref_4079_fdr	12	6	9	7	1	10	8	3	6	7
TTAATGCTGCTAGTAC	ref_4079_fdr	9	7	14	13	8	9	10	10	12	11
TTCCGGGACCGAGTGC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTCTTATCAACAA	ref_4079_fdr	29	19	34	19	12	26	17	19	29	21
ATTCTCGTTAACCTTG	ref_4079_fdr	31	23	48	40	29	37	41	40	26	42
ACACCCGTTTGATTAT	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
ATGTATGGGCGGTAGA	ref_4079_fdr	128	94	141	124	77	102	103	138	81	98
CCCTTCAGATGGCTAA	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCTGTGTTTTGCG	ref_4079_fdr	22	22	40	33	14	30	18	17	11	27
CCAGCTGGACGGTATT	ref_4079_fdr	1	2	8	3	3	4	2	6	5	1
GGATCTGATAACCTAT	ref_4079_fdr	45	27	52	48	28	46	34	39	43	39
CACACAATCCGATCAT	ref_4079_fdr	12	10	11	15	19	9	12	7	11	11
TGCTTTCAAACCTATG	ref_4079_fdr	49	44	68	47	44	60	51	52	41	38
GAGACTCTTTATGTTT	ref_4079_fdr	193	122	246	193	127	203	153	184	118	187
ATTATCCGGTCGCATC	ref_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTTAAGTAAGCTG	ref_4079_fdr	20	29	23	15	16	24	21	14	18	17
TTAGTTCCATTAAATC	ref_4079_fdr	10	5	17	20	10	17	8	18	10	13
TTTGAACCGGCATTAT	ref_4079_fdr	43	37	54	48	32	44	49	48	28	51
CAGCTCGAGAGTACCC	ref_4079_fdr	44	51	61	41	78	39	70	47	69	43
TGTCGAAGCCTTTTGG	ref_4079_fdr	48	28	47	45	23	41	22	32	44	26
AAATTGCAACGTGTCG	ref_4079_fdr	23	12	33	39	21	28	18	22	9	21
TTCTAATACGTCAATA	ref_4079_fdr	72	70	95	81	43	66	43	50	62	61
ACAATCTTTTGGTTAC	ref_4079_fdr	48	35	44	63	23	47	50	41	41	45
GCTCACGGTTCTTCGT	ref_5979_new	38	22	36	27	27	15	30	19	22	21
TTACTTGGCTCCTTTG	ref_5979_new	26	32	31	19	35	31	27	24	37	24
ATGTCATTTGCGGAAC	ref_5979_new	43	50	42	33	44	38	42	40	39	35
TTGTTCGCACGTAGTC	ref_5979_new	16	27	19	13	24	9	25	19	27	9
ACTGAATAAAGCGCAC	ref_5979_new	55	62	63	38	75	46	58	48	62	41
GCAAATTCGTTGAAAG	ref_5979_new	24	52	45	25	44	45	48	35	55	30
TGGCGATCTGGATACT	ref_5979_new	15	28	28	26	22	17	19	19	20	19
TTTGCTTCGTTGATAT	ref_5979_new	33	50	43	54	40	44	56	43	41	35
CTGCACCCCCATTGAG	ref_5979_new	18	32	31	17	29	27	27	30	34	15
GGTAAGATGGTCGAAG	ref_5979_new	38	44	49	35	31	40	43	30	46	23
GGCGGCATGTGGAATT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CCTCCGTTTTGTTAAT	ref_5979_new	32	20	36	22	29	21	25	26	20	26
TATATCGAGCCAGCCG	ref_5979_new	35	36	40	39	41	33	43	36	29	27
TCCTGCGACATGCTTG	ref_5979_new	0	0	0	0	0	0	0	0	0	0
TTGTATGAGATTTCTT	ref_5979_new	28	22	43	25	38	27	46	27	34	26
TTCTTTTTCACATGGT	ref_5979_new	12	19	23	15	18	14	28	8	27	17
ATACGAGGAACACGCT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CGCTATTATTGACAAG	ref_5979_new	16	15	17	15	21	14	16	12	17	7
ATCAAATGAGTACTTG	ref_5979_new	8	13	11	8	10	6	8	4	12	3
TTAACTGTCACTTTTT	ref_5979_new	22	19	25	21	21	22	25	17	35	14
TACGTGTGCATTGATC	ref_5979_new	88	98	90	73	89	69	119	101	89	73
AAGTGTGAGCTCCCTG	ref_5979_new	11	10	21	14	8	7	12	9	22	9
GGTGGTCGGCTATCCT	ref_5979_new	17	26	24	11	13	17	25	16	15	12
AATGTTACATATCTGC	ref_5979_new	23	49	44	43	38	29	50	37	55	41
GGTGCCTCTCAATCTT	ref_5979_new	57	59	78	58	77	57	50	54	78	66
TGTGGCAGCTCGATTC	ref_5979_new	57	61	59	40	53	53	60	26	61	41
GTCAGATATATGCGTT	ref_5979_new	17	19	24	11	31	25	28	21	27	16
TGGCATCGGATGCTAC	ref_5979_new	31	43	34	22	33	32	31	32	53	31
ACGCTCCGTGACCTTC	ref_5979_new	38	61	44	41	59	38	54	41	58	40
GCCTGGCCACCTTTAT	ref_5979_new	16	28	20	13	27	10	26	9	32	11
ATTGTATTGAATTTTC	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CCTGCGGCCAGTGTTC	ref_5979_new	0	0	0	0	0	0	0	0	0	0
AATTGCCAGCTTTGGC	ref_5979_new	8	1	9	4	6	4	6	6	9	3
TCATAGATTAATTCTC	ref_5979_new	0	0	0	0	0	0	0	0	0	0
AGGCTCTGGCCTCGAA	ref_5979_new	7	7	5	8	5	6	9	3	8	1
CAGGAGGTGTGAGACA	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CAAAATCCGGCCCGTT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
GCAGCGTTTTGCCGTG	ref_5979_new	136	198	152	134	208	132	169	129	232	121
GCACGTAAGGAACTCC	ref_5979_new	60	86	67	74	69	50	80	55	82	66
GGTATGTAGATCCCTC	ref_5979_new	0	0	0	0	0	0	0	0	0	0
GGTCGCGTTATTCAAC	ref_5979_new	18	25	26	14	17	14	20	17	25	14
GATCCATATAGAACTG	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CTCGGAGATCCCATTA	ref_5979_new	28	28	32	14	44	21	18	33	38	21
CAAATTTGGACTGTCA	ref_5979_new	14	27	19	20	36	15	25	13	24	17
TTTCTTATCAAAGATT	ref_5979_new	4	5	0	0	1	1	1	3	5	2
TATCCGCGTATGCTTT	ref_5979_new	2	3	1	1	3	1	2	5	2	7
GTTACTAATTTAAGTC	ref_5979_new	1	1	1	1	2	0	0	1	2	0
ACGACTTTGCTGCTTT	ref_5979_new	46	74	47	39	52	45	51	45	58	35
GACCACTGGCATATTC	ref_5979_new	35	46	48	47	46	29	52	24	45	32
TAGTGGTGAGGACGCC	ref_5979_new	13	20	22	14	21	17	16	17	19	18
TGTAGTGTCGCTAGCT	ref_5979_new	68	119	90	81	107	87	121	73	123	63
CGGCTCCCCGTCATTG	ref_5979_new	0	0	0	0	0	0	0	0	0	0
GAAAAGGTCCACCAGA	ref_5979_new	102	125	106	119	181	85	158	102	134	93
CTTTGCCGTCAGGAGT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CTCCTATATTATTTTT	ref_5979_new	82	87	75	68	79	78	62	46	86	72
GCACCGCAGCTGTCAT	ref_5979_new	6	10	2	2	5	6	4	6	5	4
GCTACGACGTTTCTAC	ref_5979_new	17	14	22	13	26	18	20	17	21	12
AAGGTTCATTCCCGAT	ref_5979_new	15	26	19	11	14	19	19	15	25	12
CATAATACCGTCCTGG	ref_5979_new	18	29	26	13	21	12	28	16	27	7
TTCGCGCGATTTTGGC	ref_5979_new	10	11	10	6	5	8	14	7	14	7
ATTCTGGAACTTTGTT	ref_5979_new	8	20	15	10	19	12	8	19	17	11
ATTCGATCCTCATCCT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
TTACTATTTGATTTCT	ref_5979_new	89	107	104	87	101	89	107	77	131	88
TCCACCTTTGGTTAGT	ref_5979_new	30	43	34	44	49	37	53	27	68	21
GGTGGATGGAGCGTCG	ref_5979_new	17	20	11	22	20	15	16	12	26	11
GTCAGGACTTACCTCT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
TAACTCGAAACGCGAG	ref_5979_new	50	55	44	41	56	32	37	49	58	41
ATGGTAGAAGTATGCT	ref_5979_new	50	48	39	42	38	43	45	33	53	32
CTGCATCTTATAGACG	ref_5979_new	10	21	14	22	30	15	33	23	33	22
GAATCAAACCTTGAAC	ref_5979_new	42	58	62	30	63	39	59	43	62	33
CTTAATCGTCGCTTGG	ref_5979_new	29	44	18	18	30	23	28	24	35	25
ACGTTCTATCATAATT	ref_5979_new	18	23	31	34	26	28	21	29	53	24
CGGTCTCCAAATTTTT	ref_5979_new	38	91	18	22	105	23	111	24	107	19
CAGAACTCATGTCGAT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
TTGGAGCCCCTATGAC	ref_5979_new	24	22	20	15	22	21	24	11	35	20
TTTAATTGGCCTCAAA	ref_5979_new	28	32	17	23	41	30	40	30	35	25
AGTGGACCTTGGTTCA	ref_5979_new	52	59	62	54	63	54	67	44	72	60
TTGGATGACAGCTGCG	ref_5979_new	0	0	0	0	0	0	0	0	0	0
ACTTCGGAGGCGGCTA	ref_5979_new	21	33	31	26	42	32	45	33	31	41
CCGTCGAACATTAAAA	ref_5979_new	20	127	35	22	134	27	128	21	137	10
GTAGGGGGTGTGGGAC	ref_5979_new	27	47	36	36	54	35	51	39	36	31
AGTACTGATGTATGTA	ref_5979_new	17	28	14	12	19	18	27	19	23	15
CTATAAATTTCGTTTA	ref_5979_new	41	33	48	24	42	24	43	26	43	28
TTTAGGGCATACGTAT	ref_5979_new	22	61	37	24	41	30	42	31	44	22
TAATTATGTAGTACTA	ref_5979_new	108	139	125	110	149	88	130	99	132	109
CTTTTCGGGCGAACCT	ref_5979_new	14	7	6	12	11	9	20	3	16	9
AGGGTTGTCATAGCCG	ref_5979_new	143	203	150	140	180	135	172	130	198	123
GTGATCCGATCAAGTC	ref_5979_new	20	22	28	15	27	14	39	18	19	20
CTTTCAAGTTAGCCTT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CTCGCTATATGATAGG	ref_5979_new	0	0	0	0	0	0	0	0	0	0
TTTCTGACTCCCTAAG	ref_5979_new	70	91	66	68	90	53	97	78	91	65
GTCTCAGGTACTAAAT	ref_5979_new	0	0	0	0	0	0	0	0	0	0
CGAGTGTACGACGTCT	alt_2171_reverse	13	14	16	15	18	13	24	17	19	18
GGCGTATCACTCGACA	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCTCAGCCGCGCA	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
TAACGAGTGTCAGTTG	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
TGATAATGGGTATCAG	alt_2171_reverse	64	61	81	60	64	58	53	49	66	58
GTTCAAATTTTAGAGC	alt_2171_reverse	17	24	20	14	9	16	8	14	15	20
TGGCGTTACGGCGCAT	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTGATTAGCGGTA	alt_2171_reverse	41	31	40	38	41	32	44	37	34	30
GCAAGCTATGCCTAGC	alt_2171_reverse	3	5	5	3	4	0	1	1	7	3
GAGCCGTTTGTTGCTT	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
GCCACATATGGTAAAG	alt_2171_reverse	47	67	67	53	69	57	74	48	73	61
ATCTTTCTATAGGAAG	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
GATCTCCAATGGCCAG	alt_2171_reverse	35	27	32	32	32	27	36	46	52	33
TGAAAAACCTAGGGCT	alt_2171_reverse	46	38	64	31	46	40	52	39	41	38
TTATTACAATCAGGCA	alt_2171_reverse	13	3	11	5	9	4	7	10	3	11
CGTACTGATTATCCCC	alt_2171_reverse	32	45	38	28	52	39	58	34	45	27
CCCACTTACGTGACAG	alt_2171_reverse	16	9	32	28	4	20	8	24	4	24
AAGGGCCTAGTTAGGA	alt_2171_reverse	156	126	160	130	127	157	153	184	170	104
GGTTCCTATTATTATT	alt_2171_reverse	148	144	188	157	186	133	141	128	151	130
CACGTTTTGACAAAAA	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGACCGTCTTTTG	alt_2171_reverse	15	15	14	14	13	11	14	9	12	10
TCTTCCAAGGTGTTAA	alt_2171_reverse	29	27	43	22	43	27	37	26	40	32
AACATTTCGAGTTTCC	ref_2171_reverse	38	21	47	32	24	33	30	26	22	19
TCTTTGTGTCATACGT	alt_2171_reverse	9	7	20	10	10	14	11	9	15	10
AGTGGAAATCAAAGTA	alt_2171_reverse	41	55	70	45	53	54	53	49	77	47
AATGCATAGGAAGCTT	alt_2171_reverse	22	28	16	25	19	22	18	23	22	18
TTCCCAGTGCATGGGT	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGTTCTGGATAAA	alt_2171_reverse	41	41	63	42	55	41	48	39	44	26
GCATATTTACCACTCC	alt_2171_reverse	21	62	28	18	55	27	66	19	61	16
CACTGTACCTTTCCCT	alt_2171_reverse	85	57	87	85	74	58	84	59	65	68
GTGTACATGCGATCCG	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
CAACCGCCGAGTAATC	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
AGTGGTAAACGAGCTC	alt_2171_reverse	16	21	24	22	25	24	27	22	19	19
TCAAGGTGATCCATTT	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
AAACGTGTTACTTCGA	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
TAATAGTGCTCCTTCA	alt_2171_reverse	52	56	47	28	31	60	48	33	55	36
TGTTAAAATGATTACG	alt_2171_reverse	4	2	1	1	2	5	2	4	4	2
GGTTAGGCAGAGAGTT	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGACCTAAGATTA	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
AATGTGGTCCATCGAA	alt_2171_reverse	24	29	26	23	24	35	28	16	31	17
CGTTCGCCGCTAGCTA	alt_2171_reverse	1	6	2	1	7	2	4	2	2	0
AAAGGTGTCGTGGATT	alt_2171_reverse	22	27	34	34	29	36	31	29	35	30
ATTCTCATTGGTCGTA	alt_2171_reverse	22	22	26	3	23	25	17	22	18	16
GGTTTGACCTGAGTGG	alt_2171_reverse	42	49	58	49	51	47	46	38	52	50
ATTTTTGTGTTGGAGC	alt_2171_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCTTCAGTATTAT	alt_2171_reverse	19	21	22	19	16	25	15	21	22	14
ATACGTGTTACTTCGA	alt_2171_reverse	61	79	77	70	81	77	78	60	102	64
TGAATTAATTTTCCAT	alt_2171_reverse	38	47	50	40	37	57	47	22	32	46
TAGATCGATGCGATTC	alt_2171_reverse	67	69	77	67	72	30	72	64	91	64
GTATGTTGCTGATAAT	alt_2171_reverse	12	9	13	15	7	10	12	5	11	6
AATTCCGCCTGCGCAT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTTGAGAGCTCTATAG	ref_1402_upstream	40	62	42	43	79	41	65	38	79	41
TTATATGTGGTTTAGT	ref_1402_upstream	6	33	14	16	25	17	26	15	21	12
CATGTTGAAATTATAA	ref_1402_upstream	3	14	3	8	8	5	5	4	8	0
TCTGGGCCCCGGGTTA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGATATTTTTAAGCTC	ref_1402_upstream	10	5	9	3	3	10	9	2	3	2
TACGCATGTGGACAAT	ref_1402_upstream	96	144	90	96	149	104	162	81	149	90
CGTCCTCGATTGGGCA	ref_1402_upstream	14	12	17	18	21	2	22	16	30	10
AGATTCCTCTGTGATT	ref_1402_upstream	15	21	12	20	28	19	21	24	31	18
GATCTCGTGAACGAGG	ref_1402_upstream	20	18	16	15	17	12	21	12	17	12
TGAAGATAATCATGTA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCACAGCGTACCCCTA	ref_1402_upstream	6	6	3	9	9	2	6	6	16	1
CCCCTATAAGTGTTTA	ref_1402_upstream	3	11	4	7	13	8	19	11	16	9
TTCTTGGTCTTAACCC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGGTATCATAAATAAT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATCTCATCTTCC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCTGCGCATCAAA	ref_1402_upstream	17	38	28	14	41	24	39	17	40	21
CTTATGCCAACTTGCC	ref_1402_upstream	1	15	5	4	11	1	18	1	9	2
TTGGTCCTTATACTGT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTCAACTTGCGTG	ref_1402_upstream	24	30	35	23	39	20	35	27	36	23
CCGCATTCAGGTAGGA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CACGGCAGACTCACAG	ref_1402_upstream	17	26	20	21	24	24	21	19	25	14
CAAAGGCTACCCTGCG	ref_1402_upstream	1	4	2	2	4	3	1	2	5	1
CGCGGATCCTCTACCC	ref_1402_upstream	18	13	15	8	18	12	12	10	15	13
TCTTCGTCAATGGAGC	ref_1402_upstream	7	13	12	9	13	7	17	5	9	10
CTCGCTTTCTAAACAT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GATCGAGCATTTACCC	ref_1402_upstream	9	10	8	5	7	6	7	11	5	5
CTATAATTCGTTAGTT	ref_1402_upstream	5	5	5	5	2	3	10	3	5	4
GTCCCGATTGCACGTA	ref_1402_upstream	3	14	10	4	11	0	5	4	5	1
TAACCACCGCCTTTTC	ref_1402_upstream	8	9	8	3	14	9	11	11	17	13
TTAAGGGGTGCCAATG	ref_1402_upstream	38	53	37	40	45	27	51	35	50	26
TGTATATGGTAGATTT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
ATTCACCGTGCGAGGA	ref_1402_upstream	7	13	11	8	9	10	10	2	14	2
TTTTTTGTTGGCCACA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTCGGGTCATTAT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
AAGACAGTAAGTTTGC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
AGGACAAAGCTCTACA	ref_1402_upstream	27	47	18	19	25	26	25	26	37	21
TTGCGTCTTGATCATC	ref_1402_upstream	14	36	16	19	19	14	34	15	27	10
TAGTTTGTCGATTTAA	ref_1402_upstream	1	5	4	3	4	3	1	1	2	1
TTCATGCGTTATCTAT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTTATCCACTTGTTCG	ref_1402_upstream	10	8	14	9	14	11	23	12	20	7
TTTCGAAAGTGGCACA	ref_1402_upstream	0	3	8	2	7	3	12	2	6	7
GACTGTTTATTCATTA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CATCATTTGAAGAAGG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGAACACTTTCTC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CAGACCCCCTCCACGG	ref_1402_upstream	12	11	6	12	10	4	13	6	8	11
ATACCACTCGTGTACC	ref_1402_upstream	37	39	26	41	71	28	46	30	53	19
TCTCACATATCCCAGT	ref_1402_upstream	64	100	99	78	112	71	137	83	102	53
GTTACACCATATCAGC	ref_1402_upstream	25	70	40	35	54	32	58	19	68	23
TAATCTTGTATAAATC	ref_1402_upstream	5	5	1	2	1	3	6	5	7	0
GGGGCGACGCTCGTTG	ref_1402_upstream	24	30	46	23	41	30	35	18	43	29
CCCTGAATGTTACGCT	ref_1402_upstream	12	26	23	18	23	15	23	13	38	10
TTTGCGCAATTGCCAT	ref_1402_upstream	16	26	18	20	18	11	19	12	18	14
TAGGAGTTGGTTGGAG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGGCTGTTAACGT	ref_1402_upstream	3	8	4	3	3	4	5	4	5	3
TAATTGATCCAGTCGT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CCAATCTAGCATGGAC	ref_1402_upstream	19	25	32	15	40	23	31	22	36	13
CGGGAGGTGTTATCAG	ref_1402_upstream	30	28	23	24	35	22	41	18	43	21
CATTCGGCTTTACACG	ref_1402_upstream	43	91	61	55	70	63	73	56	91	49
GTTACGTTTGTCTACG	ref_1402_upstream	48	81	56	33	70	57	91	42	99	38
GCGCTCCAGATAGGCA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCCGGCCCCCATA	ref_1402_upstream	1	5	1	0	6	2	2	0	6	0
GCTCCATGTGCAAGTG	ref_1402_upstream	0	1	1	0	1	2	1	0	2	0
TCTCCAAAAGGCGAAT	ref_1402_upstream	16	9	12	6	15	6	11	7	6	4
TCCCAGCCGGTATAGG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGGGAATTGCCTCGGT	ref_1402_upstream	11	14	24	20	18	24	16	14	21	9
CTTGTGCTTTGTTTTT	ref_1402_upstream	17	35	23	19	38	23	35	22	45	27
TATCCAAAGTCAGGCA	ref_1402_upstream	18	34	20	24	32	25	40	18	44	14
ATGTCCCGATTCCGCG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCGCGTGTTCCAT	ref_1402_upstream	23	28	23	23	18	15	25	16	33	12
TATACCGCTGTTTATG	ref_1402_upstream	9	14	20	16	31	11	24	6	21	14
TATTTACTAATCTAGA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTGGGCTATTTTG	ref_1402_upstream	30	80	60	53	101	36	80	42	79	40
TTTCTAGGCCTATAGT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCGTACTGATTGC	ref_1402_upstream	90	156	131	101	164	86	161	82	143	77
TTAGTACTAGACCTGG	ref_1402_upstream	110	148	146	77	146	110	135	96	175	91
ATGCTGTATAACGTGA	ref_1402_upstream	19	23	12	18	18	15	22	18	24	13
TGGTCCAGCTTACATC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCACTTAAACTAGGGC	ref_1402_upstream	17	13	18	11	29	11	20	13	29	16
AGTGCCGCGGGTTGCT	ref_1402_upstream	25	62	43	22	59	27	55	24	57	26
AATCGATCGAGCTCCT	ref_1402_upstream	49	54	51	53	65	46	63	42	77	41
CTATTACGCCCCTGCC	ref_1402_upstream	21	26	29	19	28	23	32	20	44	22
AAATCCTGGTAATTAC	ref_1402_upstream	39	51	26	39	35	37	25	26	52	13
TTACTTATTGATTGAG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
AAGCTTTGGTTGTGTG	ref_1402_upstream	44	77	44	44	70	36	67	20	75	32
GGAGGCGATATTCCTT	ref_1402_upstream	3	8	7	11	12	6	10	3	9	3
TTGCCACAACCTACAG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTCATATCTTCTTCAT	ref_1402_upstream	9	19	16	16	19	25	25	12	12	17
ACGGTACACCATGGGT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CACGCATGCCCACACT	ref_1402_upstream	48	58	67	66	62	57	64	63	83	45
ACATCGTACTGATTGC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTCATTTTATACCTTT	ref_1402_upstream	20	25	24	17	22	23	26	12	22	13
ATATGGGCATGATCTC	ref_1402_upstream	3	5	5	6	5	1	2	3	9	1
GGTTCATCGACGGGCT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTTCATTTATGGTCAC	ref_1402_upstream	36	83	45	38	74	39	71	41	68	39
TAGCCTGAAGTGCTCT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCTTGGGGAATTT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TACGTCCGTAGGCCTA	ref_1402_upstream	1	2	4	2	1	1	6	1	5	1
AGCAGCCTGTCCTTCC	ref_1402_upstream	6	10	5	5	4	8	11	9	4	5
TACCGTTATAGGGCGT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CAATCAGGTGTCAGGT	ref_1402_upstream	13	18	12	11	19	7	12	8	15	4
GTAGTAATTCCCATAA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CATACGCTGTTCACTT	ref_1402_upstream	24	25	18	35	37	18	32	25	34	20
CATAGTACGCCAGTCG	ref_1402_upstream	17	48	29	31	30	18	45	26	31	29
TTAAGTATGGTGGCAG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTCGGACCTTATT	ref_1402_upstream	17	44	27	14	38	16	32	19	28	15
GCTTATATGTACCGAG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCTTGATATGTCT	ref_1402_upstream	5	8	3	1	18	2	12	4	13	3
TTAATAATGCACTGGA	ref_1402_upstream	2	0	1	3	3	1	2	1	1	0
TCTTCTGGACCGCGAT	ref_1402_upstream	0	13	8	12	9	2	13	9	3	3
TTCTGCGATAATTGAC	ref_1402_upstream	17	43	19	17	54	15	43	19	39	10
CCCATCTTTAAACTTG	ref_1402_upstream	10	20	26	15	23	13	23	13	32	6
TCCGTACCTAGGACAG	ref_1402_upstream	9	20	6	10	26	14	18	11	27	10
GTAATGGGTGGCCCTC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTTTCCCATATCG	ref_1402_upstream	9	5	13	7	13	12	13	6	12	5
CAATCGGCTTTACACG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTATTAATCCGCCATT	ref_1402_upstream	46	71	56	53	70	44	79	43	79	52
CATCGATCCATCGTCA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCTTTCGTTGTCG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGGTCTGGGCGTC	ref_1402_upstream	6	11	6	2	14	8	13	8	7	9
CAGATCAGGATATTGG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGCATTTGCTCCT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CAAAAATGTTCTAGAA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTCGACGGTTAAT	ref_1402_upstream	4	8	12	7	6	1	9	7	11	5
AGGCCCGGAATTGTGT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTATTTTCCGCGACCC	ref_1402_upstream	63	112	81	66	85	82	115	51	109	66
TCTTGTGGGCGTTTGA	ref_1402_upstream	17	11	11	7	20	11	19	7	21	13
GGTGGCCGGGGGCCGC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGGTCCGCTTAA	ref_1402_upstream	7	13	8	9	10	9	8	7	11	9
CTCTTGAGTGCATCAC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGGTGGGCTGAGC	ref_1402_upstream	38	46	42	37	61	36	53	22	63	20
CGTTAGGGCTGAGTCA	ref_1402_upstream	11	17	13	7	25	9	10	9	19	10
AGTCCCCCGTCTTAGC	ref_1402_upstream	6	11	7	5	14	1	20	3	14	3
CTATTTTCCGCGCCCC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTTAACCTAGAAC	ref_1402_upstream	10	22	13	16	25	5	19	11	26	13
ATAACTTGGTATGTTC	ref_1402_upstream	1	2	2	0	4	2	1	1	6	0
TCGAGTCGCGAATACG	ref_1402_upstream	22	27	17	8	26	8	15	11	15	9
CAACAACCGCTCATGC	ref_1402_upstream	9	21	10	3	22	9	22	8	25	4
CCAATCCAGGTTTGCG	ref_1402_upstream	0	6	2	0	7	3	10	2	4	1
TCCATCCGAGTTACGT	ref_1402_upstream	19	56	29	17	36	23	57	20	39	31
TTTTATAAATAGGGGG	ref_1402_upstream	11	11	9	4	14	8	8	6	9	5
AGAGCGGCTAGGCTCG	ref_1402_upstream	2	13	3	0	12	5	9	0	17	4
ATGTCTAGCCTGAATC	ref_1402_upstream	9	16	6	2	9	2	7	6	11	10
TACAGAAGTCGGGCTG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCAAGCGATACTG	ref_1402_upstream	39	62	51	25	53	53	65	26	60	36
CTTAATCAGGAACGTC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGCGAAATCAAC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCTTCCGAAGGCG	ref_1402_upstream	125	178	134	113	179	103	166	96	176	122
ACGGAAAATGAGACGG	ref_1402_upstream	10	26	14	19	21	15	29	13	25	23
GCTGGGGGTATAGAGA	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GGCATGTCCCACGCTG	ref_1402_upstream	5	4	4	5	7	5	5	2	5	5
ATAGTACTAGACCTGG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTATCCGGGGCTG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATAATGACCCTA	ref_1402_upstream	2	6	2	4	5	5	7	2	5	0
ATCTTCTGAAGTCGGG	ref_1402_upstream	20	18	20	20	21	20	19	16	28	8
TAGGCTTCCGAAGGCG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTGTTTCGAAGT	ref_1402_upstream	25	44	38	22	38	25	55	32	29	26
GCCAAAATCGGTTTCT	ref_1402_upstream	21	34	23	20	23	21	29	30	29	19
GTGGTACGTGGAACTG	ref_1402_upstream	10	24	14	13	20	16	39	23	25	10
TGTTCGGCCACTCGGC	ref_1402_upstream	4	11	6	5	8	8	13	8	10	8
CGTCCCATGGCTCGTC	ref_1402_upstream	201	257	262	157	251	209	302	164	323	202
GTGTGTCTTGGGAGGT	ref_1402_upstream	3	14	5	7	13	4	9	4	15	7
CCTGACGCCGGTTCTG	ref_1402_upstream	6	5	1	4	11	1	18	5	12	1
ACCTTCTCTGCCGCTG	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTCGTACGTAATG	ref_1402_upstream	25	29	31	23	28	25	36	16	36	22
ATTGAGTGCTCTCTTC	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
TAGGGACTGTGGATAG	ref_1402_upstream	15	14	11	19	18	12	16	15	17	11
ATTCCCTATTAAGTGG	ref_1402_upstream	15	17	13	3	21	5	24	4	15	10
GAAAGTATGTATGTTT	ref_1402_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCGCTAAACGCTT	ref_1402_upstream	71	102	88	63	99	62	127	54	138	56
GAGTTGAGCTCACATG	ref_5887_new	13	14	10	10	14	7	14	6	19	10
TGGCAGTAAGCTCGGA	ref_5887_new	17	16	21	22	35	24	34	26	24	23
TGGGGGGGTCTGCCTC	ref_5887_new	0	0	0	0	0	0	0	0	0	0
CGGTGTGTGTTAGGTC	ref_5887_new	49	74	68	49	64	56	65	42	83	36
AAAGGCCAGTCAATCC	ref_5887_new	9	6	7	10	11	3	10	9	14	6
GTGTTCGGAAGGACGT	ref_5887_new	28	60	36	45	56	36	47	36	50	31
CGGGAGTCAGGTGTGC	ref_5887_new	2	6	7	8	12	6	2	8	6	8
CCGGTTCGAGTTCTGG	ref_5887_new	13	31	9	4	28	11	17	12	27	7
CCCTCTTAAGTATTTG	ref_5887_new	1	1	0	2	1	5	6	3	4	3
AGGGTCATGCGGCAGT	ref_5887_new	18	20	26	20	41	28	35	14	25	17
TATCCGCACTTCTTGT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
AACTTGTGCCTTAATG	ref_5887_new	89	119	103	99	118	69	118	87	124	76
TACGGGTCGTGCTGTT	ref_5887_new	11	14	16	12	20	22	27	15	34	15
GTATGAGCGTTGGGGC	ref_5887_new	6	13	14	11	15	9	23	15	14	6
TTTACGCACTTCTTGT	ref_5887_new	0	0	0	0	0	0	0	1	0	0
AGTTAAATCTAGGCCA	ref_5887_new	27	55	36	22	39	30	51	24	44	20
TGATCCTCTCTTTCTA	ref_5887_new	0	0	0	0	0	0	0	0	0	0
TCAGCCAGGCGGGGTA	ref_5887_new	10	11	2	4	12	3	6	8	15	5
GGGAACTTTCCGTTAC	ref_5887_new	38	52	48	35	64	40	33	30	46	34
GTTGGTTCGTGGATGA	ref_5887_new	38	53	76	51	54	43	68	33	74	40
GGCATCGCCATAGCGG	ref_5887_new	23	35	29	34	44	27	29	19	43	36
TTTACACCTTTTTGAC	ref_5887_new	71	119	72	58	124	65	146	59	155	55
CTTATTAATCCGTGTT	ref_5887_new	16	24	18	20	28	17	29	13	28	8
TGTTCTCGAGACAAAA	ref_5887_new	10	19	12	8	21	16	10	17	28	8
GTACGGCTATTATACG	ref_5887_new	72	78	72	58	90	57	73	69	78	48
AAGAAAAACTGCTGAT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
GACGGATCGACCGTAG	ref_5887_new	3	2	2	3	6	5	5	2	6	4
GAGTCGCAGGAGCAGT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
CGATCTGTACTTGTAC	ref_5887_new	10	7	14	8	6	10	14	3	12	6
AATTCCTATTCGTGGT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
CTAAGTGTTGGCGAAG	ref_5887_new	20	32	32	27	34	22	28	27	34	9
TCACTGGAAAATGTGG	ref_5887_new	5	3	3	0	11	5	3	1	3	1
AGCCACCGTGTCCTCT	ref_5887_new	9	32	14	19	42	29	32	19	38	9
TGGGCTTCAACGAAAT	ref_5887_new	35	52	32	35	59	38	52	48	49	30
CCGCCAAAATTATAAT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
GCCTGGCACGGATGAG	ref_5887_new	31	36	32	36	46	38	43	30	41	30
GAGATGTTATTCTTGT	ref_5887_new	43	49	52	29	42	29	46	20	46	26
AACTTGCTGAGAGGCT	ref_5887_new	8	7	11	7	8	4	6	3	8	4
CTGGGCTTTCCTCTGT	ref_5887_new	60	80	77	56	87	57	104	57	88	58
TTATGTAGTTCCACCT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
AAGAGTAACCGATCCT	ref_5887_new	82	89	90	83	72	87	116	96	99	64
TCTGAAAACATGCTAA	ref_5887_new	75	92	85	80	104	74	88	66	87	76
CGATGGATTGTACGTC	ref_5887_new	25	33	42	18	24	17	27	19	24	26
ATAGGGATCCGCTTGG	ref_5887_new	17	24	19	14	44	39	25	26	33	25
AGCTTTCATTGTTGCA	ref_5887_new	11	25	19	8	12	14	24	18	20	14
GAAAGTTGCCTTGGGA	ref_5887_new	35	31	27	20	41	26	41	31	33	31
GACCCACCCCCGCAGG	ref_5887_new	0	0	0	0	0	0	0	0	0	0
GGTCCGGTGTTGTGTC	ref_5887_new	23	96	25	26	103	28	93	20	95	24
GGTCGTACCTGTGATT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
TTATTCACAATTTAGG	ref_5887_new	10	8	9	23	32	11	18	11	16	11
TACTGAGGCTCGTTTC	ref_5887_new	61	49	59	58	83	48	85	40	90	46
TATGGCCCCAGAATCG	ref_5887_new	11	11	6	2	3	4	1	4	2	5
AGTGTGCACTATGGCA	ref_5887_new	4	16	3	10	9	6	12	6	12	3
GGTTACTCTCGTATTT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
TCGAGAGCTATTTATT	ref_5887_new	27	41	38	20	36	41	34	26	33	28
TACAAATTATTCCGGT	ref_5887_new	14	12	17	6	10	9	17	10	16	8
GCGAGCGGCCCGGCTA	ref_5887_new	33	55	60	49	57	39	52	37	46	44
CGATCCTGTTGGTCGC	ref_5887_new	17	22	14	19	21	15	17	14	30	9
GGTCGCGTCACCTGTA	ref_5887_new	0	0	0	0	0	0	0	0	0	0
GTGCATCTTCTACTCC	ref_5887_new	95	100	101	89	146	77	99	94	115	96
TTATGACAATTGTTTG	ref_5887_new	18	40	39	37	49	32	37	22	50	23
CCGACTGTCTGCCGTA	ref_5887_new	2	0	3	4	1	0	1	0	0	0
CTTTTTTATGCCGGTC	ref_5887_new	4	8	6	9	15	8	15	12	15	3
CATGTCTTAAACTATA	ref_5887_new	1	2	2	0	2	1	3	0	2	0
TTATCAGCTGCCAAGA	ref_5887_new	0	0	0	0	0	0	0	0	0	0
ATTATTCGTATCGTCT	ref_5887_new	48	35	49	35	34	29	32	40	46	37
TCTATTGTGTGTGCAG	ref_5887_new	9	15	7	8	20	10	25	8	21	14
CGATGCAGATCAATCT	ref_5887_new	11	8	19	11	13	15	13	14	17	17
CGATTATTTCCATATC	ref_5887_new	18	21	16	16	30	11	25	21	25	28
GGTTTTTGGCCTATAG	ref_5887_new	0	0	0	0	0	0	0	0	0	0
ACTGCTGTCTTTGTGG	ref_5887_new	5	6	12	6	7	5	8	3	7	3
TACCCGATGGTTAAAA	ref_5887_new	5	4	3	1	3	4	6	2	11	1
TCGCTTCCCTGTCATC	ref_5887_new	0	3	1	2	3	2	4	1	4	2
CCTCCCTGGATCGTTC	ref_5887_new	0	0	0	0	0	0	0	0	0	0
ATGGTTTTATCTTAGA	ref_5887_new	8	18	12	6	16	8	3	6	9	11
TATTGGAGTACTTTGT	ref_5887_new	43	42	35	27	64	35	58	29	40	34
AGCCTGCCGACTGAAT	ref_5887_new	6	11	5	6	7	2	13	11	17	5
AATGCCGGTCCACTCT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
AGGAGATCTTCTAATC	ref_5887_new	0	0	0	0	0	0	0	0	0	0
AATGTGTCGCCCCGCA	ref_5887_new	10	15	12	10	15	7	12	9	4	3
CGAACGCCGATAAACA	ref_5887_new	7	21	9	12	17	4	21	6	24	8
GCTACACCCTGTTGTC	ref_5887_new	11	21	13	18	16	6	20	8	10	10
TCATGCCTCTCCTTGG	ref_5887_new	0	0	0	0	0	0	0	0	0	0
ACGATTGGCGTTTTTC	ref_5887_new	0	0	0	0	0	0	0	0	0	0
TTTCCGCACTTCTTGT	ref_5887_new	357	375	430	399	402	356	383	417	402	330
GCCGCCTGCACGTATC	ref_5887_new	9	11	11	12	11	8	10	5	13	10
GGAGCCGCTGGTTCCT	ref_5887_new	21	13	31	19	21	11	24	24	37	18
CATGTTTAAGGAAATC	ref_5887_new	42	58	58	43	68	53	75	41	78	38
TTCCCGCACTTCTTGT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
CCTTCAACGTTTTTAC	ref_5887_new	2	8	6	2	4	4	2	0	3	1
TACTTTGGTTATCCGC	ref_5887_new	0	0	0	0	0	0	0	0	0	0
CCGATGTTTTCAGCGC	ref_5887_new	0	0	0	0	0	0	0	0	0	0
CGTAAGTTGTCCCGCA	ref_5887_new	1	3	1	2	7	1	8	1	9	4
TTCAGGTGGTCCATAC	ref_5887_new	30	36	45	25	55	35	44	25	43	27
GCCACTTCTCATGTCA	ref_5887_new	18	50	24	28	45	16	40	13	55	27
CCATTTGTGGGCGTCT	ref_5887_new	10	42	20	25	37	19	49	20	40	19
TCCCCACTGTCTTCGC	ref_5887_new	1	1	4	3	1	0	3	1	2	0
AAATGACATTCGTTTT	ref_5887_new	0	0	0	0	0	0	0	0	0	0
CTTCACGCCTCTGCCG	ref_5887_new	12	24	14	15	23	13	25	9	20	6
CCCGTGCATGCTGTTT	ref_5887_new	35	42	42	37	42	34	46	38	37	24
ACAATAAACCATTCTG	ref_5887_new	0	0	0	0	0	0	0	0	0	0
GTGCGGCGGGGGGAAT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
ATCAGGTTCAGTTTAG	alt_5727_new	12	6	6	8	17	11	13	7	14	8
TGCTTGGAACGTATTT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
AGGTTCATGGGTGTAG	alt_5727_new	29	53	31	44	54	21	57	32	38	30
TGCCAGGAGGCCTTCC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TCTCCAAATTCGGTCC	alt_5727_new	16	28	9	13	27	17	21	7	21	8
CAGAGGTGAATCTGAT	alt_5727_new	27	39	36	29	29	34	34	21	45	22
AGAGCCGCAAGCGGGT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
ATGGTTTGGATGTCTT	alt_5727_new	4	10	10	8	12	7	9	6	8	1
CCGGGTCTACTACCCT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TTAAGCGAGATGTGCG	alt_5727_new	86	101	116	99	103	76	134	76	127	70
TCGTCCTGTGCGTAGT	alt_5727_new	21	29	34	32	32	43	35	26	37	27
TAGGGGGTAATAGCCT	alt_5727_new	61	104	96	75	84	61	80	52	105	72
GTCTCCGTACACTTAA	alt_5727_new	68	119	98	72	130	50	130	62	130	45
CTTAAGTCGGCTATAT	alt_5727_new	9	35	20	27	29	13	28	22	28	15
AACAGTATTTGTACTG	alt_5727_new	0	5	2	2	2	0	3	2	3	0
GTCCTCAGCCCTGCGA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CAGAACCAAAGGCATA	alt_5727_new	39	89	71	38	110	44	83	35	133	41
CTGATCTTCCCAACCC	alt_5727_new	9	15	15	22	18	11	14	13	17	14
TCTCTTCGATTTACAT	alt_5727_new	30	32	25	26	34	13	27	13	44	42
ACACCTCGTCAGACCA	alt_5727_new	71	153	109	94	149	82	151	68	174	61
GTGCATGGTAGATCTT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
ATGTTTGAGTAGCACG	alt_5727_new	2	2	0	1	1	2	2	1	1	2
TGATTATTATTAGTTA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CGTGGAGTACCTTCCT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
GGACTTAATGTCCACT	alt_5727_new	8	9	5	4	13	10	15	4	8	12
GGTTATCTTCCGTGCT	alt_5727_new	22	13	25	18	22	14	20	14	22	17
TGCTTCTCTCTATATC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
GTAAATCGCCAGTCAG	alt_5727_new	20	23	20	28	25	10	30	14	43	11
GGTCATGCCCGCTTGA	alt_5727_new	18	23	23	24	17	18	29	19	17	19
TTCTTTGATACGTGTC	alt_5727_new	5	12	9	7	13	11	9	6	5	3
AAGCCGCCTTATTTTG	alt_5727_new	0	8	5	11	19	5	17	9	12	4
CAGTATACAGCGGCAC	alt_5727_new	15	7	14	6	12	11	11	7	12	7
TATATCGGTTATCGAA	alt_5727_new	6	8	1	3	4	1	2	2	1	1
GTTAGGTTAGAAAAGC	alt_5727_new	96	103	103	71	84	72	109	70	102	71
GACGAGGGAGACCACG	alt_5727_new	0	0	0	0	0	0	0	0	0	0
GGTTGTAAAACGGACA	alt_5727_new	20	22	23	22	31	32	30	23	32	23
TCCATGTAAACTTGTT	alt_5727_new	30	23	21	15	26	19	31	16	40	11
GCTCACAGACCCGTCA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CCGCTATAGCGAGTAG	alt_5727_new	16	26	23	12	28	19	27	26	27	7
TCAACCGGCACAATGG	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CCCCTCTGTCTGCCCG	alt_5727_new	5	10	12	8	8	3	17	11	13	9
GACTATATTGTCCCGT	alt_5727_new	11	18	16	14	18	12	10	17	13	9
GGGCTTAGAGTAGTAT	alt_5727_new	32	47	34	21	55	23	28	23	44	32
TCCGTTTTTATATTTT	alt_5727_new	34	49	46	46	52	35	44	20	48	36
GACGCCGCATATATCT	alt_5727_new	18	28	18	17	25	20	48	24	27	25
GACAACTATAACATAT	alt_5727_new	19	42	19	13	43	29	35	15	28	27
ACTTAAATGCTCACAG	alt_5727_new	18	43	33	26	41	22	39	30	44	16
CTTCAAGCCCCCAAGC	alt_5727_new	47	55	57	47	51	48	57	36	55	40
AGGATAGGGCCGGCGG	alt_5727_new	13	15	17	20	19	9	22	16	27	19
TTGTCATTCCCCCCGA	alt_5727_new	26	44	34	19	41	22	35	16	39	20
TTGGCGCTTGACTCCA	alt_5727_new	56	72	64	42	60	48	80	24	79	47
TTGCTACCTGTTATAT	alt_5727_new	22	34	32	21	36	13	34	23	29	33
ATCGGATTAGCACTGC	alt_5727_new	63	85	57	70	70	43	71	41	74	48
ACACGGACTGTGCTTA	alt_5727_new	72	121	92	67	111	81	136	83	124	71
ATGCACGTTCGGCACA	alt_5727_new	5	13	15	20	12	11	11	9	13	11
CCCATCTTCATATGGT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TTGCTAACTGGTAGTC	alt_5727_new	50	76	52	65	76	44	92	56	77	46
CCGAACTCGATCTGTT	alt_5727_new	63	123	68	51	117	55	127	56	128	48
CCCTATCCTTTTCGCG	alt_5727_new	39	49	36	48	47	28	52	41	56	35
CGAAAGCTATCACATT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TATCTTATCATCGATT	alt_5727_new	104	163	100	107	109	94	140	83	138	105
AAAAGCTTGACCGTGG	alt_5727_new	62	65	53	47	66	40	59	52	68	30
ACCCCTCGTTATCCAA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TTGCCACCTGCAATGG	alt_5727_new	7	16	10	6	14	6	15	7	15	12
TTCACTAATATGGCCA	alt_5727_new	14	12	21	12	25	15	27	13	28	17
TGCCGGACATAGCTCT	alt_5727_new	26	34	20	18	23	13	27	22	31	16
GAAAGGTATGTCTGTT	alt_5727_new	67	78	83	55	84	61	85	49	69	43
CTGCGCCAGGTCGTGC	alt_5727_new	8	12	14	14	13	8	10	5	11	6
GTGGCTCACCTTGGGA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
GGAGCGTATCAGTCCG	alt_5727_new	26	42	41	42	49	35	34	34	51	25
TATCCACGTGTACTGG	alt_5727_new	28	33	15	30	30	12	22	18	39	21
TGAGAGACCTCTGCCC	alt_5727_new	3	13	6	5	10	2	16	6	25	6
GTAGCCTAATCACGCC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TTCGGGCTCCCACGTA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CAAGGTCCACCGGTGT	alt_5727_new	13	34	30	24	29	20	33	34	43	13
ACTTTTGGCTATAAGG	alt_5727_new	12	14	5	10	10	8	12	3	8	13
AAGAGTTCAAAAGGCC	alt_5727_new	35	42	41	25	39	32	44	31	40	30
TACTTGGTTGTTGCCT	alt_5727_new	20	28	16	18	25	9	26	16	21	13
CGGACACCTTTTGTGG	alt_5727_new	21	21	20	14	19	16	34	11	37	11
CCGGTTAGCTCATGCC	alt_5727_new	30	119	45	32	109	22	104	24	115	28
CTATTGTGACGGGGGT	alt_5727_new	67	106	87	57	95	68	89	64	120	51
TTTCAGCTCCCGGCTC	alt_5727_new	18	24	18	24	20	15	29	12	27	16
CTGGTCACAGGGCCCC	alt_5727_new	46	59	35	35	70	41	44	32	43	28
CACTGCGCTAAATTAG	alt_5727_new	18	22	31	19	20	22	31	25	39	25
AGCCACCCGTTTCTGG	alt_5727_new	15	27	22	15	37	16	34	9	35	9
TACGGGAAGTATGTTA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CCAGGTCTGTAGGCGC	alt_5727_new	7	36	5	9	37	2	38	3	36	4
TCACTACAATCGTGCT	alt_5727_new	0	0	0	0	0	0	0	0	0	0
ACGTACAACGATGCGC	alt_5727_new	0	1	5	4	6	4	5	2	4	1
TTGCTATCTGGTCGTG	alt_5727_new	8	14	12	5	10	4	13	3	9	8
TAGCCTGTTTAAGCTA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
ATCTTTCCGGGATCAT	alt_5727_new	83	72	68	67	93	60	95	56	88	66
GTGCCTTATTTATTGC	alt_5727_new	11	16	16	10	19	7	18	8	16	6
GTAAACACGGTAGATC	alt_5727_new	28	38	42	37	26	35	37	18	44	24
ATATTACCCATAATAC	alt_5727_new	8	17	18	10	15	9	13	19	10	8
AGAGTTGGCCTTTACC	alt_5727_new	51	85	61	72	94	53	81	53	99	57
AAATGTACGTTCTGAA	alt_5727_new	119	161	170	114	154	128	185	145	187	110
AGTTCAGCCCCCCATA	alt_5727_new	5	5	5	2	2	4	5	4	4	0
TCGGGAAACGCTAATC	alt_5727_new	12	32	16	24	31	17	41	17	39	9
GTAGCTGGGATGCACT	alt_5727_new	18	30	37	37	45	21	44	26	39	28
GAGTATCCCAGAGAAC	alt_5727_new	21	38	10	22	30	26	26	13	34	13
TTTTAGGGGTCCCCGG	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CTACTGGGCTATGTAT	alt_5727_new	3	2	6	0	5	1	4	3	2	5
ACTTCTAGATGTTCTG	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TGGGGACCGGCTGTAT	alt_5727_new	23	37	26	28	42	36	35	24	30	26
AAAATAACTCTACGTA	alt_5727_new	25	38	29	28	33	45	58	28	35	23
CGCATTGCATAATAGC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
GTATCCTGCAGTGTCT	alt_5727_new	1	6	1	2	3	1	3	1	3	1
TATTGTGCCCTTAACG	alt_5727_new	2	2	4	4	1	0	4	4	6	1
TCCATTCCTTTCTGCT	alt_5727_new	56	72	68	50	66	47	72	51	79	43
CGGAATCGTGGTTACA	alt_5727_new	41	66	63	44	66	47	62	41	53	37
TTTATTCGCCATAGTA	alt_5727_new	5	12	21	10	14	6	14	17	18	15
TATGAGCCTTGTACTT	alt_5727_new	48	67	50	42	87	58	70	48	72	43
CCGGGTATTATGGCAC	alt_5727_new	11	23	13	14	27	10	28	17	32	8
ACGGCCTATGTCGTGA	alt_5727_new	17	14	15	11	24	19	17	20	23	16
GAATGGCCGGCCATTA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
TCGTTCTTGCGCTATG	alt_5727_new	13	18	17	11	10	15	14	9	17	11
CTTATATTTGAATTAC	alt_5727_new	20	48	27	34	61	38	39	32	62	33
TTCATTCCTTTATTGC	alt_5727_new	77	93	67	91	100	75	86	61	89	72
AGTCAGTTATATAACA	alt_5727_new	61	45	65	51	67	49	87	49	80	52
CATTGGAGAGTAGGGC	alt_5727_new	81	93	82	66	118	81	96	46	124	44
GTGTTTCATTACCGCC	alt_5727_new	32	53	56	37	65	39	46	39	54	47
AGGACTTGTTAATCAC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CCAGGGTTACTCATAC	alt_5727_new	79	146	108	101	160	62	145	81	168	59
CCCCTGGGATCGCAAG	alt_5727_new	11	13	12	12	17	11	26	3	9	13
TGATCATATGATCATT	alt_5727_new	44	61	64	65	66	44	59	45	89	35
TTGTTTAGTTACATTG	alt_5727_new	24	31	25	16	51	14	39	24	38	15
CCGTAAGAATGGCGGG	alt_5727_new	0	0	0	0	0	0	0	0	0	0
ATATCCTAGGTAATAT	alt_5727_new	21	20	24	16	23	14	23	16	10	13
AACGACAGAGCGCTCG	alt_5727_new	11	16	26	13	37	21	30	14	23	18
CTTAGCTAGTCCTACG	alt_5727_new	10	8	7	5	11	9	12	8	23	7
TGTTTTCCGCGACAGA	alt_5727_new	84	80	84	62	73	81	89	45	94	60
CACCGCATGGGGTACA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
AGGCGCCCCGTTCTTG	alt_5727_new	37	63	52	45	47	46	52	48	60	33
CCTCGTGCTGAGTCCA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
GGGTTACCGGAAGTTC	alt_5727_new	51	67	70	51	93	49	65	55	77	51
AGATAAGCGGCCCGTT	alt_5727_new	8	16	17	18	11	9	13	11	14	8
CCTAAGTCTTTCTCGG	alt_5727_new	12	23	12	11	27	11	31	9	33	10
ACCCGATGGGCCTTAT	alt_5727_new	9	19	10	12	20	9	17	11	21	7
TGGTCCTCATCCATAG	alt_5727_new	19	39	25	34	39	18	26	18	35	18
GATCGCTCCGGAGTAG	alt_5727_new	29	60	27	30	49	26	64	27	43	13
TTCGGCCGCGTGTCGG	alt_5727_new	0	0	0	0	0	0	0	0	0	0
ACGGTGGTATTTAATC	alt_5727_new	16	40	35	29	40	19	54	25	45	15
TCGATTACCGTGTCGC	alt_5727_new	38	40	41	36	50	36	43	32	39	21
GTTCCACTAACAGTAC	alt_5727_new	36	29	30	31	41	23	25	33	37	14
GGATTGGGCTTGTTCG	alt_5727_new	16	26	20	14	18	15	15	28	36	19
CTCGTTATTGAGGCTA	alt_5727_new	11	27	21	17	33	23	17	16	17	12
CACTACCGCAAGTCAT	alt_5727_new	23	31	21	20	31	10	35	23	39	27
ACGTTAACTAAAATGT	alt_5727_new	36	47	46	48	49	39	52	38	47	42
ATATCTCACAGTATAT	alt_5727_new	17	25	26	5	18	18	23	14	14	11
TCCGGGAAGACTGTAT	alt_5727_new	2	12	3	4	10	7	19	1	15	1
CGTTCTAAGGAAGACG	alt_5727_new	15	8	21	14	21	18	15	4	11	12
ATATTAATATGAAGGT	alt_5727_new	62	79	93	56	88	50	60	44	92	45
CTCACTTATCCAACCC	alt_5727_new	0	0	0	0	0	0	0	0	0	0
AATTTACGTGTTTTAG	alt_5727_new	17	15	10	13	10	5	12	10	29	13
CTAATGTCGCTTAAGA	alt_5727_new	40	42	40	35	36	29	34	30	37	35
CCTGGGTGTATAGTGA	alt_5727_new	97	125	116	94	128	79	123	95	154	94
GTGATAAGTATCTGAA	alt_5727_new	25	38	31	20	32	18	28	23	34	27
ACCGTGAGATAACGTA	alt_5727_new	72	92	115	77	108	82	113	83	120	77
CCGAGGCAAAGGACAG	alt_5727_new	27	43	31	33	41	25	34	43	50	37
CCGATGCACTTCAATA	alt_5727_new	0	0	0	0	0	0	0	0	0	0
CGCTCCAGAATAGCTT	alt_5727_new	15	13	7	5	15	9	19	7	9	5
TGGCCGCTAAAACTGA	ref_1416_RC	71	76	87	70	67	81	80	59	71	82
TCACCGTGGTTTGCTC	ref_1416_RC	5	10	7	3	13	1	6	4	8	1
CTCTCAGTAGTGTCAG	ref_1416_RC	3	9	6	6	4	5	9	5	8	8
TTTTAGATTGCGAGTC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CGGTTAGGATCCGAGT	ref_1416_RC	10	8	9	11	7	4	11	8	10	11
CTAGTCCGCCTTTAGC	ref_1416_RC	93	122	149	111	124	107	124	91	130	92
CTACAGTGTAGCACGG	ref_1416_RC	0	0	0	0	5	1	1	1	2	1
TTTGTATTTTCCAGGA	ref_1416_RC	143	101	163	141	112	133	144	123	142	140
GATGCAGCCCTACGTC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ATGGCAAATGTGACCT	ref_1416_RC	22	27	31	24	25	36	17	31	17	27
GTCTGACATTGGAGTG	ref_1416_RC	16	16	21	22	21	15	18	14	19	15
CATTGTCTCACAGTAT	ref_1416_RC	18	23	19	20	16	11	13	5	11	14
CACACTTGGCAGGCTC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ATGGAGTTCACGCTAG	ref_1416_RC	35	19	38	23	22	29	24	35	23	20
GTCATCTCTAGAACAG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CGTTGGCATCTGGTCG	ref_1416_RC	6	2	5	6	3	3	0	1	4	3
ATTCACAAGCAATAGT	ref_1416_RC	39	25	35	45	19	27	37	32	37	20
ATTTGCTCGTATCACT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GGCAACTGGCGTGGTG	ref_1416_RC	30	33	40	34	36	37	35	28	42	22
CTTGTGCATCCTATGA	ref_1416_RC	9	5	14	16	6	9	13	8	12	9
TAGTTATACTTACGAG	ref_1416_RC	3	11	5	5	14	4	9	5	19	2
TACCCATCTTTCGTAC	ref_1416_RC	3	8	9	7	5	16	7	11	12	7
TATTAGTCCTACTCTT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TAGCTTAACGCGCTCC	ref_1416_RC	28	39	43	32	40	46	35	34	27	32
ATGACTAGCACCTTCG	ref_1416_RC	36	39	31	19	47	18	56	22	54	40
GAGGTTACGGACTCGA	ref_1416_RC	16	8	29	25	24	23	15	16	12	13
TCAGGTTCCTAAGTGT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TGCTCTCCGTACTCAG	ref_1416_RC	10	6	13	7	9	7	12	7	4	6
TCAATCGTTTTCACCA	ref_1416_RC	22	10	28	27	29	21	12	14	13	10
CGCTTTGCCATTTAGG	ref_1416_RC	29	16	27	18	19	25	13	25	14	18
GGATCCCCCGGCTCGA	ref_1416_RC	0	0	0	1	0	2	0	0	2	1
GTTTCAGCTGCTAGGA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
AAGCTTGTTTCGTCCT	ref_1416_RC	114	91	155	125	106	104	74	116	103	115
TAATAATGCTTCAATT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTGACCGGAGTTACTA	ref_1416_RC	46	41	63	47	34	33	48	46	38	35
AACCTCTCATTTTGTC	ref_1416_RC	39	45	66	33	41	56	37	43	53	38
AGTACACTAACAGTTG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TCGCGACACAAGAGAT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GAACTCGCCACACTTC	ref_1416_RC	8	13	10	11	8	12	9	11	9	9
GGGCGAGTCGGTCTGT	ref_1416_RC	4	11	5	6	8	5	19	4	13	5
TGCGTACTGAGACTGG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ATCCGGGCGTACCGTG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CATTCATCGGTCTTCA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TATGACCGGAAAGATC	ref_1416_RC	36	32	35	43	34	27	34	28	42	27
AGAGAACTCATTGCAT	ref_1416_RC	10	6	16	16	7	14	7	5	18	17
TAAAATAAACCTTTGC	ref_1416_RC	94	72	128	146	86	102	83	95	73	99
CGTTGCACTACATGGG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TGTGCGCAGATTCCTG	ref_1416_RC	11	12	8	13	11	12	16	11	14	11
TAATGAGCTAGGTCAC	ref_1416_RC	269	239	345	252	262	288	242	276	267	264
GAACGGGTCACGTGTC	ref_1416_RC	166	139	211	173	165	171	155	141	165	158
TCGCAATTTTTTATTT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
AACCGCAATATACGTT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
AAGGTGTTCCGGTTAT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TGAATACGTGTAGCTG	ref_1416_RC	122	97	182	142	118	114	109	129	138	119
GGGCCTCGATCCGAGT	ref_1416_RC	154	77	128	139	93	103	96	135	95	128
CTGGGACATTGCTGTG	ref_1416_RC	22	11	28	16	18	19	19	17	14	15
TACCCTGGAACGCGCA	ref_1416_RC	44	37	65	61	66	47	32	58	47	46
TAAGCGTGTCTCAATG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GAGCGGTATGCACCAA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ATGGGGTAGTTGCGGC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTGCGTATTGTCGAGA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GTTAGGAGAGTGGCGT	ref_1416_RC	6	1	2	1	2	2	1	4	5	6
GCTTTAGCTCTGTCGG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTCGACCGGAAAATTG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GTGTTCGTATTAGCAT	ref_1416_RC	9	11	14	18	8	12	18	10	16	10
AGCTTCCTGCAATTAT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTCGACAGTATTAGTT	ref_1416_RC	25	29	34	38	24	18	29	36	34	33
TGCTTCCTGCAATTAT	ref_1416_RC	284	269	345	323	275	295	247	226	264	277
CTTCCGCTCGGAAAAA	ref_1416_RC	21	16	23	26	19	32	16	24	26	29
CTCGACTCCGCATCAC	ref_1416_RC	0	2	1	3	3	1	2	0	0	1
CTAGGGATGACTATTT	ref_1416_RC	3	0	8	2	5	6	7	7	3	9
GTCAGCAGCCGAGCTC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TCTCGCTCGCCGAGTT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TAGCAATTTTGCTCTG	ref_1416_RC	45	49	78	47	42	39	50	54	48	65
GTAATTTTTGACAGGT	ref_1416_RC	30	37	42	27	34	23	22	33	33	20
ACTGAGGGTGTCTTTG	ref_1416_RC	10	7	15	18	13	16	15	10	12	15
TTTATCGCCTTCGGTT	ref_1416_RC	31	26	34	20	19	25	31	24	22	11
GGGCTCCGACGCTACT	ref_1416_RC	28	9	16	25	16	16	16	23	17	12
TTCTTAAGGAGTTGCT	ref_1416_RC	19	21	20	20	11	17	16	22	21	15
TATTAGCAAGTTTGGC	ref_1416_RC	16	7	20	10	16	10	16	14	8	13
GCCTCTCCCTGGCCTA	ref_1416_RC	29	31	48	29	32	31	35	26	24	28
TCGTCTCACGAAGTTT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CGGGCGAATGTCATTT	ref_1416_RC	135	127	168	129	113	120	120	126	120	117
ATGATTTAACGTAGGC	ref_1416_RC	33	34	37	32	16	30	27	18	32	19
ACTGAAAGCATAAGTC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GGACTCGCGGTGTCCT	ref_1416_RC	1	0	0	1	0	0	0	0	0	1
CAGCGTCCTTTTAGAC	ref_1416_RC	36	29	27	34	32	26	22	30	35	29
TGTTTCTAAATTGTCT	ref_1416_RC	90	79	110	88	62	116	79	72	75	87
TTTCAACGCTCTCTTC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CGGCCATGGAAAATTC	ref_1416_RC	29	24	53	36	33	16	20	34	19	33
TATGCATAGATCCATG	ref_1416_RC	25	26	38	30	31	37	35	29	22	37
GTTCACCAGTTCGCCT	ref_1416_RC	4	2	4	5	5	0	2	8	3	3
TGAGATATGGTAATGC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ATATCTCTATATGGCG	ref_1416_RC	11	15	26	22	16	21	13	14	13	23
TACGTTTATTAGCTGA	ref_1416_RC	23	14	25	25	14	25	15	16	19	13
TGGAACCACTTTGTCG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TGCTTCTCGACTGTCG	ref_1416_RC	69	68	71	49	32	55	66	38	53	48
GGGTTCAATCTTGCGA	ref_1416_RC	36	45	41	35	45	29	55	31	47	29
CCAATTCGGTTCTAGA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
AACCCTCAATTGCATC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CACTGTAACAATGGGG	ref_1416_RC	14	6	8	11	11	11	8	9	1	12
GTTTTCTCGCTCTATA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ACTATCAGCGATTAGT	ref_1416_RC	6	4	2	7	2	2	2	0	2	1
GGGCAACCAGATTGAG	ref_1416_RC	59	61	80	46	55	34	37	64	57	43
CAGCGCGTCGTAAATT	ref_1416_RC	4	5	8	3	8	2	1	9	6	4
CTTGCCTGTGTTCATC	ref_1416_RC	0	9	9	5	8	6	8	10	9	3
TGAGCGTCGAAAGGGG	ref_1416_RC	11	11	14	8	8	15	8	8	6	18
ACTTTTTTCTGCCTCT	ref_1416_RC	80	53	95	76	49	75	41	60	57	68
GGTTTATTGACCTATC	ref_1416_RC	36	23	40	26	26	40	31	24	38	30
GCACGGTCTGGCACTC	ref_1416_RC	58	59	43	43	72	45	71	50	64	41
ATTTCACCCCATACAG	ref_1416_RC	9	7	0	8	5	4	4	10	4	7
TAAGTTGTCGAACAAC	ref_1416_RC	23	23	37	19	26	41	23	33	17	22
GGGCAATTCGTCCGTA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TGGTCGTCTCGACAAT	ref_1416_RC	24	16	31	17	16	17	13	16	23	20
AGGAGGTTAGGATATA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ATGTTCTACGTAGTTA	ref_1416_RC	3	3	5	6	4	7	5	6	5	3
GGTCATATGTCTCGCC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TCCGGTCTCGGGAGTG	ref_1416_RC	2	5	1	2	8	4	4	0	5	0
TATGTTGCTGCCCGGC	ref_1416_RC	23	16	21	24	13	15	18	19	15	12
CATAATTATATCCTAG	ref_1416_RC	3	4	3	2	4	2	3	3	5	1
CGTAGTGAGACTATGG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
AGGACGAGTTCGAGTC	ref_1416_RC	316	257	393	345	253	288	265	292	284	252
GCCTCGTCATCCTGGT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTTTAAGGTCCACTCT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GAGTGAGTGTGATGGG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTGGAGTAGGCGTGTA	ref_1416_RC	37	29	45	22	27	36	29	36	38	25
ATTCGGCGATATGCTC	ref_1416_RC	1	3	4	3	8	3	3	3	10	3
AGAGCGGTCGTTTACG	ref_1416_RC	2	18	17	13	10	11	18	11	17	9
TGGCTGAGACCTATAC	ref_1416_RC	18	13	27	16	15	19	13	11	22	12
TTGTCGTGGGTACAGG	ref_1416_RC	9	11	20	10	8	8	9	8	13	16
CTAGTCGCGTACCACG	ref_1416_RC	14	4	12	6	11	10	6	6	11	11
GAATGTTCGCCCTTAT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTGAACAGAATGTCCT	ref_1416_RC	50	23	44	33	26	26	33	33	29	22
GTCGCTCTTCCTGGGG	ref_1416_RC	32	27	50	23	39	33	32	25	34	31
CTCTCTAGCTTACGCC	ref_1416_RC	13	7	12	13	8	6	11	13	7	4
GGGCTCGCCGTTAACA	ref_1416_RC	55	71	85	61	64	59	86	44	77	30
TGTTAGTGAGTAACGA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
AGTCTGGTTCTCTAGC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCAATACTCTAA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GAATCCTCTAGAGAAC	ref_1416_RC	2	0	1	1	2	2	0	1	0	0
GGGTTTCTCCGGCGGT	ref_1416_RC	26	23	30	28	23	45	28	23	28	19
AAAACACCTTCTCTTT	ref_1416_RC	45	26	47	47	36	42	32	38	35	33
CTTCTTTCCGGTTCTG	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GTGGGGTAGCGTCCTC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
AACACGCAAAAAGTCT	ref_1416_RC	49	33	90	65	46	67	43	43	60	60
TGATAGTCTATAATGT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GGTCGGTGTGCTCGCC	ref_1416_RC	12	9	10	21	16	16	16	9	19	15
TGGCTCCTTCAATGCT	ref_1416_RC	53	40	61	51	39	56	61	62	54	55
TTTATCCAACAGCTCC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
ACCGCACAACTCTGGC	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CGCATCCTCCTGATGA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CTTGCGCGTTTCAGGC	ref_1416_RC	100	63	113	107	70	73	81	76	74	90
CCAGGGATCGGCCTTT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TCCGTGGACGTCCAAT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
CCACCTGCGATAAAAC	ref_1416_RC	3	3	6	6	4	6	7	2	4	1
AATCTTCTCATTCTGT	ref_1416_RC	42	38	49	40	33	34	25	32	19	27
AGGTATCGGGCTCATT	ref_1416_RC	184	148	259	230	180	188	174	187	153	170
CTCCGTTTTGTAAGAG	ref_1416_RC	34	21	37	32	25	28	32	21	30	20
CCTGGTTGGGCGTTCG	ref_1416_RC	24	23	38	33	30	35	19	16	24	16
GATAAGGGGTGTGATA	ref_1416_RC	53	62	58	66	50	59	73	53	48	60
TACCTCGTCTTTTTTC	ref_1416_RC	76	43	77	72	43	62	52	65	56	54
GGCATAACTTATTCTT	ref_1416_RC	34	23	43	17	17	30	37	28	26	21
AGAACTTCTGTGCTCA	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGAGCGTGGAAT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
GTCTTATTTGATCCTT	ref_1416_RC	0	0	0	0	0	0	0	0	0	0
TAATTTATCACGCATC	ref_1416_RC	43	37	45	44	41	42	30	35	41	33
GCATTCATTCTTTGAG	ref_1416_RC	43	42	62	45	35	38	23	39	34	34
TCACGAAAAATACATA	ref_1819_RC	13	7	12	6	6	7	5	5	2	9
GGGATTTTAAATCGGC	ref_1819_RC	323	227	372	380	247	314	175	255	264	259
ATACATGTCAGCTGGG	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TGCTGATGTTGCCAGT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
GACCACGTACTCAGAC	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
GACATTAAGTCCTGAA	ref_1819_RC	2	1	4	2	0	4	3	1	5	3
CTTGACTTCCCTCCGT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
GCATTACACGTTTTAT	ref_1819_RC	53	34	44	52	20	39	25	37	28	27
ACGTGTCCAAGGGTCA	ref_1819_RC	58	31	60	52	29	53	37	38	44	43
TATGTAGACAACGCTG	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TAATTACTAAAGGGTC	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TCATCGATGTTTATAA	ref_1819_RC	2	7	13	7	8	13	7	3	10	11
TTCTGTCAGAGCAGTT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
GATTTCATAAAGTTCT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CAGTGCTCATGTCAGT	ref_1819_RC	22	19	24	26	22	13	19	11	15	20
TTATTCGTACTATGCG	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CAACTAACACCGAAGC	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CGATAGTGTTGATGCC	ref_1819_RC	27	20	27	26	24	23	27	36	14	17
TTGTCATTGTATCATT	ref_1819_RC	6	6	10	10	6	7	5	11	8	8
TTTCGCATATTAAACG	ref_1819_RC	26	14	46	34	33	43	15	31	33	22
AGTTTCATTGGGACTA	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
ACAGACGCATAGGGTC	ref_1819_RC	14	7	10	21	16	15	10	21	14	16
GCACTCCCCCCGACCG	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CGTTGAGTAGTTGTGT	ref_1819_RC	26	14	20	14	17	14	11	14	16	19
TTGCGTAGGAATATTA	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TCGTTAGCTACATACA	ref_1819_RC	10	9	19	14	7	12	11	12	8	16
TACTCGTTCCGGTTTT	ref_1819_RC	15	17	22	20	15	17	13	21	20	13
GGCTGTTGTTTGTTGG	ref_1819_RC	78	74	104	98	63	52	64	79	88	87
TCCGTGACTGGCAGGG	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
ACCTGATTGAATATTC	ref_1819_RC	2	6	4	10	3	4	8	5	6	5
GGCTATCGACTGCATT	ref_1819_RC	38	20	49	29	27	35	33	33	34	34
TGCTCCAGGCGCTGTA	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
ACGATGATATGATTCC	ref_1819_RC	101	71	150	120	58	95	66	90	54	89
TTGTATTGAGGCCTTC	ref_1819_RC	86	41	96	59	38	85	57	65	44	62
TCGTTGTACACCTTGG	ref_1819_RC	8	9	6	6	3	10	6	1	13	2
TCATTGTTTCGTCTTT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TGCTGCTAGTTGGCGG	ref_1819_RC	137	100	201	158	110	151	131	152	115	125
TGAATAAGGATGCCAG	ref_1819_RC	27	14	26	28	14	27	27	25	20	23
TCTTTCTGTTCAACTA	ref_1819_RC	61	55	76	66	47	68	47	43	45	51
CCCGTGTGATAGGACC	ref_1819_RC	43	21	47	43	55	43	42	40	29	29
GCACGTAGTCCGTACA	ref_1819_RC	3	1	11	5	11	6	6	6	4	5
CTCAGGCTGGATTCCA	ref_1819_RC	11	15	11	11	12	7	8	17	13	10
GGGCTGGTAATTCCAT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CTTGCGCATTCGCAAG	ref_1819_RC	19	19	12	22	10	17	13	21	8	13
TTTGGTCTCTTGCGCC	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTTTCTGTTGTA	ref_1819_RC	32	25	37	31	16	36	31	37	33	24
CGTGGAGACTTGTAGA	ref_1819_RC	31	19	44	35	22	30	17	27	25	44
CCACGACGGCAATAGT	ref_1819_RC	81	69	99	84	72	71	64	82	71	76
CATTCGTCAAGATATA	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TTGGTTGACTGCTGCT	ref_1819_RC	13	29	21	16	21	17	16	15	37	12
CTGATCCCGCGTGCTC	ref_1819_RC	61	33	80	47	50	59	30	63	45	47
TTCCATGCGTGGTTAC	ref_1819_RC	249	173	297	309	195	254	179	261	156	232
GTGGATCGAGTTCGGC	ref_1819_RC	100	69	118	111	86	96	59	72	85	71
ATAAGAGTGACGGTAA	ref_1819_RC	18	17	23	19	23	20	15	14	24	22
ATAGTTAAGACAGCGA	ref_1819_RC	16	7	14	22	12	12	18	14	13	16
CCGAATTTCATACAGA	ref_1819_RC	19	25	23	11	20	17	22	12	18	12
ATTGGTAAGTGCAGAC	ref_1819_RC	31	24	63	57	39	57	39	48	39	43
GTCATGCTGATCCTCC	ref_1819_RC	89	83	123	86	69	79	53	78	83	73
GTAATCCAGGTGTATG	ref_1819_RC	170	140	202	204	140	171	165	175	157	172
CGTCGTTGTATCTAAC	ref_1819_RC	6	4	4	5	9	7	4	4	3	9
CAACGCCATCGGGGTG	ref_1819_RC	11	9	24	18	18	19	3	11	13	17
ATGGTTCTCATGCACG	ref_1819_RC	1	0	1	2	0	0	0	1	0	3
TTCTTACCCTAATCAC	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CTATGTGAGTCCCCCT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TTACAGTCTTAGCTCT	ref_1819_RC	11	9	7	11	7	7	5	5	4	6
TCTCCGATGACGGGTT	ref_1819_RC	2	0	0	6	1	3	1	1	2	0
GCCCAGTAAACTTTTT	ref_1819_RC	45	33	40	38	25	32	30	42	33	38
GCCATCCCTATCTTTT	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
GGTCCTAAGTGCTTGT	ref_1819_RC	47	53	70	52	54	56	58	58	44	57
CGTAGTACCGGTATTA	ref_1819_RC	4	3	9	10	7	1	1	3	2	5
CCAATCGTATTTCAAG	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CGTCTGTTGGGCACCG	ref_1819_RC	60	64	78	90	52	86	66	74	68	61
CCATCGGGCGACTCGC	ref_1819_RC	6	5	6	8	9	2	3	4	12	5
GTATCAGGGAGCAGGG	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
GTCATTTTGGCAATTT	ref_1819_RC	119	88	145	122	93	106	76	120	98	94
TCGGGTATTCTTGATT	ref_1819_RC	34	20	41	36	21	34	17	19	24	17
CTGTAGGCTCATAGAG	ref_1819_RC	98	91	108	103	78	63	65	116	94	81
GACATTTGCGTTGTTC	ref_1819_RC	6	6	5	3	1	5	3	4	4	0
GTTTTTTCTTGTGGCC	ref_1819_RC	77	42	96	86	50	93	47	77	56	88
TGGCTATCTCCTCTTC	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
CTATTCCTGACCATGC	ref_1819_RC	0	0	0	0	0	0	0	0	0	0
TACCAATCAGACTAAT	ref_2171_reverse	73	100	102	110	71	71	102	91	93	99
CACCAGTGCAACCCGG	ref_2171_reverse	68	93	74	53	87	54	94	53	110	55
AGCATCCCAGCATTTG	ref_2171_reverse	76	70	81	78	75	70	65	78	80	79
CCTGGTCTGTAATACT	ref_2171_reverse	10	20	19	20	22	10	21	19	20	11
GTAGCGTGGCCGTGGA	ref_2171_reverse	47	22	56	49	46	55	29	41	46	41
GCGTCAGACTCACCTT	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGTATCCGCTTCT	ref_2171_reverse	24	37	45	35	38	38	20	25	35	27
TCGGATCATGGCGTTC	ref_2171_reverse	39	29	46	41	40	37	30	33	27	33
ACCAAATTAATCCAAT	ref_2171_reverse	38	64	57	43	52	40	66	38	60	37
TTTAGGATAACTCCGA	ref_2171_reverse	91	94	113	87	88	85	91	78	127	72
GTATACATCTGCTAAT	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCTAATGTTGAGG	ref_2171_reverse	6	6	4	4	12	7	2	7	2	4
TCCTTGAATCGTGCCG	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
CACTTTCACACGGGTA	ref_2171_reverse	8	12	19	19	12	15	13	14	12	12
GCAATGGACCCTTAAC	ref_2171_reverse	2	1	1	2	2	6	0	1	2	0
TAAAGACACCAGCCTC	ref_2171_reverse	22	27	40	19	24	24	20	13	28	22
TCACAGGCGTTGCCAA	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTTCTTCCCGTTT	ref_2171_reverse	107	91	106	128	87	82	87	125	91	89
TTCGCAATCATTTAGG	ref_2171_reverse	18	12	25	28	11	28	14	16	11	25
GGCTAACAAGCAGTTT	ref_2171_reverse	25	21	17	27	27	25	13	13	29	12
CCGCATTCCAAGCTAC	ref_2171_reverse	91	109	119	140	115	106	117	100	138	92
GAATTATTCAGCTACT	ref_2171_reverse	29	33	37	29	31	40	25	28	34	25
GTTGGTTTATCTTAGG	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
CTTACCAACACATATT	ref_2171_reverse	100	105	143	125	128	110	121	112	138	76
TTCGCGAGTGTCGCTT	ref_2171_reverse	9	8	6	13	8	8	5	6	11	9
ATTTCTGAGCCTCTAC	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
GAATGCCTGCTCAAAG	ref_2171_reverse	9	9	23	13	13	14	13	13	20	16
ATTAGCGATACCCCTA	ref_2171_reverse	53	64	68	47	53	54	54	42	66	48
TCATTGCGGCAGATCC	ref_2171_reverse	56	77	108	49	79	63	103	64	62	58
CCTCTAATTCCATTGG	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
GGAGGGTCCCCGATAC	ref_2171_reverse	25	22	22	18	23	13	12	10	17	13
CCAGTGGGCTCATTTG	ref_2171_reverse	9	20	20	7	21	9	19	14	15	11
ATGAGCGGGTTATCCA	ref_2171_reverse	1	0	0	4	0	0	2	0	1	4
TTAATTGTATCCTACC	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
AGGGAGCGGCTTAGAA	ref_2171_reverse	23	31	34	47	28	28	36	34	33	35
GATAGTTGGTTACCTG	ref_2171_reverse	26	35	29	23	39	30	33	30	37	18
CGGGTTCTCGCGTCGC	ref_2171_reverse	0	0	0	0	0	0	0	0	0	0
CTAATCGCAGGGCCTA	ref_2171_reverse	108	105	152	110	123	96	127	130	107	116
CAACTCGGGGTATAAG	ref_2171_reverse	17	11	15	18	15	15	25	10	25	17
TTCGAAGTGGCTGTTG	ref_2171_reverse	56	56	46	44	33	45	68	38	56	33
CGGGCCTTAGTATCGG	ref_2171_reverse	6	4	7	4	8	6	3	5	8	6
CTGAGCTACCATCATC	ref_2171_reverse	3	4	3	6	3	4	9	2	3	5
GGAACTTTGCGTTATC	ref_2171_reverse	22	9	21	13	18	13	14	19	20	9
GTCTTGATTGTCGCCT	ref_2171_reverse	130	105	162	121	114	111	101	111	117	110
TCAGTTTAGTTGCTCA	ref_2171_reverse	34	50	39	41	34	37	40	36	37	37
TCCTCTCATGTACCCG	ref_2171_reverse	82	67	66	72	68	75	98	67	94	68
TGCCCTTGGCTTTATC	ref_2171_reverse	27	41	46	34	22	41	42	37	41	23
TTGTGCCTCTTACTTG	ref_2171_reverse	17	24	27	37	20	20	19	24	17	24
CCTTATGCAAAATGCT	ref_2171_reverse	24	33	18	13	16	10	35	19	29	19
GTTTTCACTGTACTTG	ref_2171_reverse	8	21	7	17	17	4	19	10	23	11
TTGACGTCTGGTAAGT	ref_2171_reverse	6	8	14	14	13	6	15	10	8	5
AAGCGGAAGTACGACC	ref_2171_reverse	109	83	115	94	129	85	103	96	95	82
CATTCACTCGGAGGCG	ref_2171_reverse	10	12	16	18	16	8	7	15	8	9
TGCGGGCGTTCTTTAT	ref_2171_reverse	8	11	15	11	16	17	12	10	17	12
TGGCTGCAGTGACTGT	ref_2171_reverse	20	28	32	32	23	30	20	23	29	26
AGCACTCGGGTCTATA	ref_2171_reverse	49	56	28	71	49	54	52	50	59	49
TTAACAGGAACTTTCG	ref_2171_reverse	29	21	49	49	24	50	32	32	19	31
CCTTGTGTCGCTGTTC	ref_2171_reverse	6	7	8	1	4	8	6	2	5	4
TGTTTAGGATAGTAGT	ref_2171_reverse	112	97	146	108	80	116	110	91	102	73
AGTCTGTAAGCATTAT	ref_2171_reverse	34	65	50	48	51	44	67	51	61	39
TCGGTGCCGTAGCCCC	ref_2171_reverse	44	30	43	47	33	38	30	30	41	33
GTGCGAGTAGCGGTAG	ref_2171_reverse	44	22	38	42	33	34	30	30	40	35
TCAATAGCTCGGTGGT	alt_1201_negative	30	38	40	26	52	19	56	27	51	27
GCTGAGTAACCCTTCA	alt_1201_negative	9	9	14	9	21	7	19	8	25	7
GCAGCCACCTTGAGCG	alt_1201_negative	2	1	0	1	6	0	0	0	1	0
CGATAGTAGGTTGGTT	alt_1201_negative	32	73	45	56	76	35	88	31	70	22
CATGTAGACGATCTGG	alt_1201_negative	75	120	85	72	125	80	121	74	158	74
CCTGCGCTGCCTTCCT	alt_1201_negative	12	9	7	4	7	6	13	6	16	4
AGTGTAATGTGATCGT	alt_1201_negative	2	2	7	1	4	2	5	5	3	3
TTCTGGGATTAGTTAG	alt_1201_negative	12	19	5	19	25	4	13	6	24	4
TTTGCAGACTTCACTC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CTCATTGCTTGAGTGA	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TGGCTATTTTCTTGAT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
AACTGAATTCTCGCGG	alt_1201_negative	11	16	8	5	18	10	22	4	24	14
GGCCGGAGAAAAATCA	alt_1201_negative	17	22	10	20	22	12	23	8	13	7
ACTCTTCATCTATTAC	alt_1201_negative	6	36	8	12	31	14	32	9	32	12
TGTCGATCTCTGTGCT	alt_1201_negative	14	32	15	6	35	14	40	10	26	7
ATCCATAATTCTGCTA	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TAAACTGCTTGTGTAG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
ATTTGAGTATTTCATG	alt_1201_negative	5	11	7	8	13	7	15	6	19	6
TCAGACTTCGCTTGAA	alt_1201_negative	6	9	13	2	10	6	10	5	17	4
GGTGCGGGAATTTTGG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TTTCCTTTGGGTTGAA	alt_1201_negative	5	15	8	3	8	10	12	6	16	5
AAACTCGAGCGGACGC	alt_1201_negative	7	20	7	6	21	10	17	6	18	14
GGTGTTCTCGCCGGTT	alt_1201_negative	30	44	32	16	34	15	39	20	42	17
TAGAGATTCGTGTCTC	alt_1201_negative	16	42	22	10	30	11	24	15	48	17
TTATAATTGGCAATTT	alt_1201_negative	8	16	13	7	7	5	18	5	17	6
AATCCGAACCGGATTT	alt_1201_negative	15	28	13	12	17	13	37	12	21	4
CGCATAGAACTTTCAA	alt_1201_negative	13	38	19	16	35	19	62	20	33	19
ACGCTATAATTTGCGG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CACACCGGCTTGACGA	alt_1201_negative	114	204	160	136	258	110	187	121	240	124
GCCATTGTGGGCTGGG	alt_1201_negative	11	27	14	7	16	6	36	15	22	13
TCCGCTAGCGACAGCG	alt_1201_negative	6	20	17	4	21	5	18	3	22	15
CCGTCATTCCTCCTCT	alt_1201_negative	49	68	54	43	92	36	88	38	74	37
GCAACCCGGCTTGTCG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
ACTCGTGGACGGGCAG	alt_1201_negative	6	16	8	9	16	7	15	6	21	7
TGTTTATCGCACATGC	alt_1201_negative	8	15	5	3	9	5	9	3	10	3
GTCGCACCCAGCATGC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GTTGGTGTACTGCTGA	alt_1201_negative	10	24	19	25	28	17	35	22	33	16
GTTCCTCTGGTTTTGG	alt_1201_negative	53	127	57	61	147	57	126	47	135	52
TACCTTCAATCCACCT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TATTTTATCGCTGATT	alt_1201_negative	30	50	44	31	46	39	52	39	57	26
CTTTTAATCTGGACGG	alt_1201_negative	73	121	75	64	125	61	148	61	131	45
TTTCTTGCATGTTGAC	alt_1201_negative	30	71	36	35	66	38	72	36	77	26
CCATCTCAATAACTCG	alt_1201_negative	2	9	4	3	17	0	7	3	11	4
GATTCACGCAATTGCT	alt_1201_negative	12	10	6	3	23	11	16	5	16	12
TTTGGTCGCGTTGTAC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GGTTGATTCTTTACAC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
ACTCTAATCGTTTGTG	alt_1201_negative	41	69	24	22	62	30	55	22	57	26
TCGGCCATTTTGGGCT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GGAAGCATATCTTGTT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TGAACCTCGCGTTCAG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GTTCATTTTTTCCAGG	alt_1201_negative	2	12	9	21	11	8	18	7	22	7
GCTCTCCATCGCACCG	alt_1201_negative	30	57	27	26	56	28	66	23	45	11
TCCTACGCCATACAGC	alt_1201_negative	5	14	16	7	17	7	14	8	18	7
GCACCTTCAACTCGCA	alt_1201_negative	15	18	11	13	10	7	24	8	21	8
ATGAATGCTAGGGTCA	alt_1201_negative	19	32	20	32	43	17	29	23	52	20
ATTCATTGTCGTCACA	alt_1201_negative	3	6	3	5	5	2	4	2	9	1
TGTCAATATCCTTAAT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TCCGTTAGACAACCCG	alt_1201_negative	21	77	27	22	96	30	68	26	88	21
GCCGTCGTCTGTTGTA	alt_1201_negative	7	31	20	15	28	12	24	16	30	12
GCTCGAACTGATAGAT	alt_1201_negative	43	99	55	42	91	49	93	49	88	39
TTGTTAGCGCTTCGGT	alt_1201_negative	21	33	19	18	27	19	35	21	35	16
ATCAATTACCTTCGCG	alt_1201_negative	11	15	6	5	16	5	27	5	12	4
AGGCATCGTCTCTTCC	alt_1201_negative	24	37	30	30	50	16	53	19	44	23
TAATGATATTCGGCGC	alt_1201_negative	135	276	190	153	278	154	318	183	325	116
AGGTTCCATTCCAGGC	alt_1201_negative	6	13	9	1	11	10	17	1	13	6
AAGGAAGTTACACTAA	alt_1201_negative	28	72	33	41	64	24	86	27	73	25
CCTTGTCCTGAATCGT	alt_1201_negative	2	6	5	3	10	4	9	3	4	2
ACGCTAATGTGCGCAT	alt_1201_negative	10	20	11	7	20	12	26	13	23	5
TGCCGCCCCTCGGGGG	alt_1201_negative	31	44	22	21	41	22	57	19	58	21
TATCGCCAAACCTCGC	alt_1201_negative	12	12	9	11	14	6	20	5	7	7
TTATCATCGATACCTA	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TTAGCCTGAGACCCCG	alt_1201_negative	22	46	39	36	66	42	65	32	68	26
GACCAGTGTATTGAAT	alt_1201_negative	8	18	7	4	17	11	26	6	29	10
CAAACTGTAGCTAATG	alt_1201_negative	20	22	22	16	31	15	38	19	34	12
CCCCCGGTACTTCGGA	alt_1201_negative	9	15	7	6	11	2	22	5	14	5
CTACTCCGTTTCCGTA	alt_1201_negative	39	135	54	39	143	29	140	37	146	32
GTCCCGTGTTCCCGAA	alt_1201_negative	20	19	8	7	31	21	23	19	35	16
CCTTGCATGAATTTTC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CATCTCGTCCCGGTAA	alt_1201_negative	70	111	105	65	136	81	156	75	150	67
CTTTTATGTAGATGAC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GTCGGGACACGTTTTG	alt_1201_negative	5	5	4	9	11	7	14	8	11	4
GTCTATGGTGCAAGAG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TCTGTGTAACGTGGCA	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TAGCGGTCTCGGTCCA	alt_1201_negative	2	7	13	6	7	14	14	13	10	10
TATTCTTGTCTGGCAG	alt_1201_negative	10	24	13	7	16	8	14	8	19	8
CGGGGAGCACAGCACA	alt_1201_negative	8	21	11	8	13	5	11	8	10	8
GGTGCGGGAATTTTGT	alt_1201_negative	8	30	18	13	22	15	16	12	16	6
TTGCTGTAATTGATTG	alt_1201_negative	41	96	49	34	73	47	75	30	114	31
GGGCATGTGTTTTATG	alt_1201_negative	9	6	6	6	7	3	10	4	9	0
TGCTGCTATGTTTCCT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GTATCCTCGTTTCTTT	alt_1201_negative	57	69	44	35	54	33	61	44	50	39
GGTTGCAAGGGTAGGC	alt_1201_negative	41	60	50	30	78	29	79	37	89	35
TTTTAGGGTCCGATGA	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GTGGGGCGGCAATCCG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CAACGCTAGGGCAAGA	alt_1201_negative	4	7	4	6	10	2	5	3	7	3
CTAGTATTGACAATAT	alt_1201_negative	3	14	2	1	15	4	10	1	12	6
TCTTAACAATATACAG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CGGCTTCCCTCTTTGC	alt_1201_negative	24	26	17	12	27	10	37	12	28	12
CCCACAGTTATTCCAT	alt_1201_negative	2	6	2	0	6	8	6	3	11	1
TATAAGTTAGTTATGC	alt_1201_negative	3	17	10	3	6	5	16	5	17	2
CGAGTGGCAATCTTAA	alt_1201_negative	9	6	4	3	9	6	8	2	11	4
CCCGTTGGTCTTCAGA	alt_1201_negative	14	43	27	18	32	10	40	13	49	12
GGTTTCCCATATCTGC	alt_1201_negative	26	57	36	18	46	29	77	18	72	14
GGAGTGCTCTAATCTC	alt_1201_negative	26	43	27	22	50	16	45	23	38	20
ATTCGAGGTTAATACA	alt_1201_negative	15	38	23	19	26	14	31	15	32	14
CAGCAATGGCGTTTTC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TGTTTAGCGCTATACT	alt_1201_negative	19	43	12	13	24	21	41	15	32	14
GTTCCCGGGATTCCTC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CTATGGGATTCTGACT	alt_1201_negative	33	54	31	20	50	30	61	12	66	12
TTAGTCAAAGAACCGA	alt_1201_negative	0	1	0	0	0	1	1	0	0	0
ACAGTTTGCGGGGCCC	alt_1201_negative	42	83	60	58	82	58	101	32	92	38
TTTCTGTCTTTATTCA	alt_1201_negative	18	49	34	15	50	29	57	24	57	18
GTCCGCTTTCTTACGG	alt_1201_negative	11	36	26	12	35	15	45	28	45	16
ACAGGAAAATGTCCTG	alt_1201_negative	20	29	18	10	20	9	29	17	33	11
AGAGCATCCGTCTAGG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TCTACCGCATTGAAGG	alt_1201_negative	8	7	15	10	10	3	12	9	13	7
CCCATACGGGTATAAG	alt_1201_negative	20	30	25	14	28	13	27	14	27	11
TTTATAGACACCAAGC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
ACTCTATATTCCTATT	alt_1201_negative	11	39	19	17	33	14	23	20	22	9
TTGCCTCGCGGATCCT	alt_1201_negative	6	9	12	6	12	6	10	3	11	5
CAAGTGCGGGGTCTTT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GCATTCTTTGACTTCA	alt_1201_negative	3	13	8	3	6	2	13	4	7	6
CCATCTCTTCATCGTA	alt_1201_negative	47	105	57	53	80	41	99	54	97	45
TAGCGCCTTTTTAGTT	alt_1201_negative	5	20	13	12	14	3	10	1	20	6
TTTGTCCCAATTATCT	alt_1201_negative	46	135	73	64	139	43	121	52	172	55
GGTACTGCTGGGTATG	alt_1201_negative	2	3	3	5	1	0	4	3	1	1
CTGGGGCGGCAATCCG	alt_1201_negative	202	429	239	242	410	207	427	201	434	240
GCCATTCTATATCTCT	alt_1201_negative	12	36	26	17	55	14	42	17	55	13
CTTTTACGTCTGAAGA	alt_1201_negative	10	15	10	9	11	11	14	14	20	8
CGACCTAAGATGCGAG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CTCGTTTCGAAAGACC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TGCCCTTAAGCTTGTC	alt_1201_negative	4	3	1	3	7	2	10	4	7	2
GTTCGTTTCCCTGTTA	alt_1201_negative	21	42	35	20	43	20	36	13	38	15
AGTTGCACCATCTCGG	alt_1201_negative	34	74	44	29	92	45	74	40	89	35
CTTGTGTTAGGGACAT	alt_1201_negative	32	59	31	39	68	21	62	27	69	23
TATGTGTTGGGTTCCG	alt_1201_negative	21	50	49	40	88	37	63	36	66	25
ACGACCTACTTTCAGG	alt_1201_negative	13	33	24	22	38	18	39	12	52	17
TCTAGGAGTACTCGGG	alt_1201_negative	1	10	2	0	16	0	6	4	12	0
TGCTGGGGGATTCTTG	alt_1201_negative	17	47	28	18	53	22	47	22	59	26
TATTTCCACCCGAGTG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CGCTTCGATGGGTATG	alt_1201_negative	1	0	1	0	0	1	0	0	1	1
CCGCCCTTATCAATGC	alt_1201_negative	31	51	43	34	38	35	57	24	67	20
TCCTCTTTTGGGTCAC	alt_1201_negative	6	17	12	9	23	7	23	8	20	8
GGTTCCGTTTGATATT	alt_1201_negative	6	27	15	10	30	12	24	10	31	11
CTAACACGATCGCCGG	alt_1201_negative	3	2	2	0	4	1	0	2	1	4
CTATCCTGGAGCTCAT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CCCCAATTCCTCACTT	alt_1201_negative	13	18	11	8	15	6	15	3	20	5
CCATCTCTTTCGCTCA	alt_1201_negative	7	15	12	19	33	8	22	9	30	6
CCTTGAATTCCTCTCC	alt_1201_negative	2	27	6	2	19	4	22	2	24	6
GCCCACGTCTTGTCAG	alt_1201_negative	2	2	4	2	11	7	11	3	15	4
TGAGAGACGTTTTTTT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TGGTTCTCATTTTTGT	alt_1201_negative	54	99	61	46	142	50	105	55	126	48
ACCATCGCTTCGCATA	alt_1201_negative	10	13	14	12	20	7	19	2	20	6
AACATCGGAGAAAGTA	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
AATGCGTAAATTATCT	alt_1201_negative	8	16	4	5	13	11	9	4	13	11
GGCCGCAGTCTAGTAC	alt_1201_negative	11	18	7	9	30	9	25	9	41	6
TTGTCCCGACTTTGTG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CACCTCACAAATCGTC	alt_1201_negative	6	15	16	8	9	7	23	7	17	7
GATTTATGTTGATTCT	alt_1201_negative	65	90	75	51	66	60	82	54	88	49
TGAAGCTTATATGCTG	alt_1201_negative	7	10	5	6	7	4	13	7	13	8
TGAATACCCCACTGAC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GGGGATGTTGGAAATG	alt_1201_negative	12	18	8	11	36	6	39	16	22	5
TGACGTCACTTTGACT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TGTGCCCGGTGACTAG	alt_1201_negative	35	120	43	40	105	54	111	36	132	35
TATGTGCTCGGGTGTT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GGACCGCCTTTATGTC	alt_1201_negative	4	22	7	5	15	11	19	4	20	5
ACCGTTAGACAACCCG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
GTATTCTATGCCCTGT	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
TCACAGCTTGCGCTTT	alt_1201_negative	65	94	51	80	127	54	123	46	113	47
GTTCTCGCATCTCAAG	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CCTTTGGACGCCCCCC	alt_1201_negative	0	0	0	0	0	0	0	0	0	0
CCTGCGGGCTTTTTCG	alt_1201_negative	10	15	7	7	17	6	16	6	14	5
TTAACTAACAGCCTTT	alt_1201_negative	27	40	15	13	33	9	28	12	41	14
TCTTTCGTGACGGGTT	alt_1201_negative	21	45	32	23	49	26	58	18	51	21
AGTCGGCAATTTTGCC	alt_1201_negative	8	28	8	11	10	14	18	18	10	5
GTCCCCGGTGTGTGGG	alt_1201_negative	4	63	16	14	58	9	45	14	43	13
TTGATAGGAGCTACCA	ref_2169_upstream	227	248	250	196	288	238	287	170	268	160
TCTAATAAGAGCCAGC	ref_2169_upstream	51	49	50	53	38	40	55	34	47	44
TGTTTAACCTGTATAG	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGGTCGTCTCGCG	ref_2169_upstream	18	27	35	22	23	12	24	25	28	18
TTTTCGCTGCTAGGTT	ref_2169_upstream	31	58	47	33	57	40	38	36	44	45
ATTGGTCACTCTCCAG	ref_2169_upstream	30	39	45	34	39	26	50	34	43	32
CTCTAGCAGCAGCGCG	ref_2169_upstream	12	23	14	12	14	17	14	15	16	6
AAATTCGAACCGGCTC	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTATTAACCCTCG	ref_2169_upstream	10	20	22	9	10	9	18	14	12	11
TTGGTATGGTGCGACC	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCCGCTAGCTGCC	ref_2169_upstream	14	23	17	21	19	17	19	17	16	20
CCACTAAGCAGCTGGG	ref_2169_upstream	24	38	31	30	43	24	40	19	61	29
GTGCGTCTGGAAACAC	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
AATGATTGGACGAGTC	ref_2169_upstream	72	94	75	71	78	51	67	51	91	49
CTCAGTTTTAGGGTAT	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTGACCGATCAAT	ref_2169_upstream	29	52	46	39	82	35	61	43	59	22
TGACCTCGTTTGCTCG	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGGCTTTGTTAGG	ref_2169_upstream	31	39	27	34	38	27	49	44	39	30
TTTAAAATAGAGCTTT	ref_2169_upstream	177	197	219	172	190	140	171	174	180	141
CGCATCGAATACGTGC	ref_2169_upstream	63	63	62	63	96	70	86	53	83	56
TTCCAGGTAGAGCTTT	ref_2169_upstream	49	84	66	61	96	55	111	44	110	42
ACAGCAAACAATGGCA	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
CGGACGACGGTCCCAC	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
GAACTGCATGTGCCTC	ref_2169_upstream	56	46	46	47	71	46	61	41	60	34
TCTTGTTTCTTACATC	ref_2169_upstream	15	19	18	11	22	17	18	13	35	12
TTTTATTCTTGTGGAG	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTCAACTCCGCTT	ref_2169_upstream	26	30	28	18	22	14	29	26	19	28
TCTGGGCAATTGTTCC	ref_2169_upstream	40	48	78	34	60	36	62	44	68	30
TTTTGGTCGGAGGTCC	ref_2169_upstream	34	26	31	20	29	19	31	21	33	14
GTATTTTAACTGCGTT	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTTCCTATTTATT	ref_2169_upstream	31	48	59	44	60	25	53	25	42	36
CGGGATGTGTTCTTTT	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
ACGGTAAATCACGGAA	ref_2169_upstream	14	28	34	19	28	11	28	19	22	7
TCGTGGAGCTATGCCA	ref_2169_upstream	33	26	35	22	30	21	29	25	39	22
TGGGGCACGGTCACAC	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGATTAGGCAGTA	ref_2169_upstream	102	98	111	98	105	101	125	81	113	78
TATACTGGTGTCCCGG	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCAAACGTACTTC	ref_2169_upstream	34	41	25	24	38	34	49	40	35	34
TTCATACAAGTGCCTA	ref_2169_upstream	40	52	50	49	56	50	77	51	50	46
CCAATGGTGAATATAC	ref_2169_upstream	67	91	78	62	111	66	106	75	101	64
CGTGCCAGCTGTTCAC	ref_2169_upstream	35	46	40	34	55	31	47	47	64	38
CTTGGATGCCTTGTAA	ref_2169_upstream	25	19	23	21	29	26	28	24	30	20
TTTTTGTCAGCATTTT	ref_2169_upstream	23	33	23	23	28	20	29	18	35	19
CTTTCTCAGTGTGGTT	ref_2169_upstream	22	23	36	33	25	12	21	22	17	15
TATAGTCTTATCTAGA	ref_2169_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTGGCTACACTGT	ref_2169_upstream	18	29	18	22	23	16	17	14	20	16
GCCGCACTTCCCGGCA	ref_2169_upstream	51	86	80	65	73	53	97	77	86	62
TGCCGCGAACTTTTTA	ref_2169_upstream	27	25	27	26	38	24	40	18	41	21
TCGCTTGCAACATGTA	ref_2169_upstream	68	83	65	61	83	60	77	65	110	65
ATAGAGGTTGCATGTT	ref_2169_upstream	10	20	19	26	21	13	28	18	37	14
CACGTGCTTCGCCGGA	ref_2169_upstream	5	12	5	9	4	9	10	11	11	7
CTTTTGTCCCGTTACA	ref_2169_upstream	1	2	1	3	4	0	2	0	2	0
GCAGCGAGCGTCAAAG	alt_5749_new	7	21	27	39	25	23	30	15	26	11
GGACACCGAGGCGCTA	alt_5749_new	0	0	0	0	0	0	0	0	0	0
GGCGGCACGTCGATAG	alt_5749_new	10	9	16	17	11	15	11	11	5	12
GCAGCCTCACTACGAG	alt_5749_new	0	0	0	0	0	0	0	0	0	0
ATCGGCCATTTATGCG	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TGGTACCGTAGTAGAG	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TGCGTGGCACCGCTTT	alt_5749_new	105	85	109	92	67	88	93	80	65	98
AGAATCCTTAGCATCC	alt_5749_new	104	73	134	116	75	99	91	110	81	108
CTACTCCATTATCCCC	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TGGACGTTGCTCTACG	alt_5749_new	8	4	4	5	5	12	6	8	2	7
ATTGACTATCTTTTCT	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TGGTACAACCCCTTCT	alt_5749_new	23	22	35	16	25	17	32	27	14	15
ATGAGAGAGGTTAATT	alt_5749_new	15	13	19	23	20	15	24	15	15	16
CAATCGTATTCAGTTG	alt_5749_new	0	0	0	0	0	0	0	0	0	0
GCTCGGTAATTATGAC	alt_5749_new	17	21	36	41	21	22	23	30	30	21
GACCTTCGTCTATTGA	alt_5749_new	0	0	0	0	0	0	0	0	0	0
AAAGTTACGACGGGCT	alt_5749_new	72	76	111	97	62	99	61	97	64	76
CTTGTTATAACTTACC	alt_5749_new	9	24	8	6	22	2	19	3	28	3
TCGGTCGTAATCAGAA	alt_5749_new	22	12	29	18	20	21	20	22	31	26
TTATCCCATCCACTTT	alt_5749_new	77	44	107	85	75	74	77	64	70	80
GCGTTTGCATTCCACT	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CGCAGAGAATGATCGA	alt_5749_new	79	67	92	89	48	73	70	75	78	53
GGAGTTGTGGCACACC	alt_5749_new	25	23	29	41	26	32	27	33	42	25
CAAGCTACGTCCTTGA	alt_5749_new	539	396	589	503	419	444	428	465	436	453
TAAATGCGCCGAAGTT	alt_5749_new	62	37	72	71	58	53	50	74	49	52
CTTTCATGCCTTCTTT	alt_5749_new	0	3	1	0	3	2	4	2	5	1
AATGTTTCCAGCCCTT	alt_5749_new	166	174	236	211	157	164	156	177	150	170
TCGGTTACAGGCGAAT	alt_5749_new	39	32	39	24	35	35	33	37	16	24
ACCTCCCAGTTTTTAC	alt_5749_new	7	15	4	6	16	5	15	6	17	1
GGATACAATCGGACGG	alt_5749_new	39	43	61	55	31	64	52	47	56	45
CGGCCCCTGGAGCGCG	alt_5749_new	123	125	183	118	96	98	128	91	102	138
GGTGCGTAGTTGGGTG	alt_5749_new	71	77	106	62	82	65	80	84	60	75
GAGTCCCGCATTTGAC	alt_5749_new	36	32	34	32	34	30	31	42	29	43
CTACTAAATCTCATGC	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CTGACTGAATCAGGTG	alt_5749_new	27	21	35	26	11	27	15	25	21	26
GCGTAGTGGGCGCGCG	alt_5749_new	43	25	48	59	23	35	30	33	29	34
TCGTATAGAGACGTTT	alt_5749_new	25	33	53	34	27	31	32	40	27	32
GACGTTTGTCATGGCG	alt_5749_new	13	6	15	6	16	7	9	7	6	10
AAATGGACACCACGCC	alt_5749_new	0	2	2	5	8	7	3	0	1	5
TATCGTGTGCTTTTTC	alt_5749_new	90	42	80	86	32	87	39	85	47	73
TATCTACTATACGCTC	alt_5749_new	35	27	36	30	30	35	39	36	21	29
GAGTGCTTATCAGATT	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CCCGTTAGAGGCCGGA	alt_5749_new	0	2	0	0	1	0	1	2	3	0
GTATGTTCCAGGATTT	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TCTTTCCCCGGCTTCG	alt_5749_new	45	54	47	48	76	54	62	30	59	45
AATGGCCAGGACTATC	alt_5749_new	50	17	62	46	30	36	41	60	32	41
GGTCGTTTGGGCAGAG	alt_5749_new	17	9	17	6	4	20	11	13	11	4
CGGGGGTTTGCGTCGT	alt_5749_new	14	9	22	16	9	20	25	19	5	16
TGTCAGTCCATTCCTA	alt_5749_new	120	114	146	121	95	104	113	134	78	115
CACATATTGGTTCCAC	alt_5749_new	42	25	39	42	29	42	16	30	44	30
CTTGATACCTATGTGC	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TGATAGTGATTTTACT	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CACGATATCTGCGATC	alt_5749_new	34	21	30	27	14	16	25	19	14	35
GTCGGCGTGCTTTAAG	alt_5749_new	81	83	108	114	63	93	85	103	71	90
CGGTAAAGGCTTGAGA	alt_5749_new	7	1	4	6	10	6	3	9	5	9
ATCACACGCCGCAGAC	alt_5749_new	64	50	93	62	51	69	42	74	56	54
TTCACCTCCTTCGCGC	alt_5749_new	5	8	14	14	5	13	16	10	13	9
AGTACGGCAGGCACGC	alt_5749_new	33	23	27	30	21	20	16	37	24	27
AACTGATCCATTTCTT	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CTCACCTTAAGGTTTC	alt_5749_new	0	0	0	0	0	0	0	0	0	0
GTCGTAGAGCACGTAT	alt_5749_new	15	10	23	19	25	23	15	16	5	10
CGAGGCTGCTGCAACG	alt_5749_new	0	0	0	0	0	0	0	0	0	0
GTGTTTTCTAGAACAG	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TCACGTATGGCATTAC	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CCAAGCAATTTTTCGC	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CAAGCGCTCTAATATT	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TGGATGTACAAGTTAC	alt_5749_new	23	16	27	26	11	21	18	21	15	20
CATTATCCTCTTGTCG	alt_5749_new	0	0	0	0	0	0	0	0	0	0
ATGATCTCTCGGACGT	alt_5749_new	14	10	16	27	14	20	13	20	15	20
TCATTGCTCGTGCTCA	alt_5749_new	0	0	0	0	0	0	0	0	0	0
CAGCGTGCGCTATTTA	alt_5749_new	0	0	0	0	0	0	0	0	0	0
TCTCAAGTACCGATGT	alt_5749_new	14	31	18	8	22	7	28	11	25	10
GGGCGCGTTACACGCA	alt_2989_RC	168	213	171	187	222	169	235	150	245	157
CATCCAGCCGGTCATG	alt_2989_RC	52	128	81	66	127	59	123	59	123	51
TAAGATAGTGTAGTTG	alt_2989_RC	32	44	46	35	80	42	52	34	56	28
GCTGACCTTTGTTTTA	alt_2989_RC	8	18	16	13	14	7	23	6	27	14
ATGGCTGCATTTCGTC	alt_2989_RC	17	24	20	15	33	18	33	16	18	15
AGACACTCCTCTTCTT	alt_2989_RC	4	36	0	2	42	1	42	3	35	1
ACTTTTTTAGTACAGG	alt_2989_RC	74	93	62	52	84	52	117	57	84	37
TAGGCTTGCGCTTTTG	alt_2989_RC	9	16	6	8	7	6	9	5	20	5
TCATCTCTCGGGTCTG	alt_2989_RC	38	72	62	77	75	51	61	73	93	44
GAGAGCAATGTCTGTA	alt_2989_RC	15	24	19	14	20	16	41	7	28	17
AGATTTCTCGCATGCT	alt_2989_RC	33	64	57	47	85	48	94	48	92	30
ATGGCTTAGTTTATCA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TGCATTCCGGTCGCGG	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
CTCATTACGTGCCGCC	alt_2989_RC	26	40	31	26	32	15	37	18	32	18
GCGGACCCTATGGAAC	alt_2989_RC	9	19	5	9	21	4	11	10	10	7
TCCTTGCCCTCGTGTA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TTTCATAGCCGGGGTT	alt_2989_RC	90	177	88	109	191	102	185	91	214	97
CGCATCTTTGCCCCTT	alt_2989_RC	5	14	6	14	16	13	17	6	20	5
TATCGGGTTTTGGGAT	alt_2989_RC	4	15	7	4	10	12	7	3	9	10
GACGTTCTTGCTTGTT	alt_2989_RC	91	166	130	103	186	117	217	104	177	78
GGTAGTGGTCAAAGGC	alt_2989_RC	28	39	35	37	39	25	41	33	37	24
GCCGGTAGCGTTGGTT	alt_2989_RC	90	169	111	84	177	92	163	90	170	88
GTCGTGGTGGCGCTTT	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TGTATGTATTGCTTTG	alt_2989_RC	127	222	146	133	233	139	248	109	255	128
CATGCAGCATACGCTG	alt_2989_RC	24	61	46	32	59	29	63	26	77	30
AAATACGGTAGGGATG	alt_2989_RC	6	13	2	2	2	7	5	8	11	3
GCCGGTTAGTAGTAAA	alt_2989_RC	14	27	25	11	29	16	31	13	41	10
GTAACATCCGAGAACG	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TGTACTTGTACCTCGG	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TCCATGGCTTCGGATG	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
GGTCATTCGTCTTATC	alt_2989_RC	0	0	1	2	2	2	1	0	2	0
CGCGACCCGGCCTTCG	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TATTTCAGATTCCGCA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
GGCGAACATCTTAGCA	alt_2989_RC	15	27	19	12	36	18	38	13	26	13
GATGAATATACATTAA	alt_2989_RC	60	93	83	81	109	70	95	68	121	60
CTATGATGGAAGCCTC	alt_2989_RC	12	23	9	8	19	9	12	17	12	11
CGAGGTCCACGCTTGT	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
AATGCCTCTTGCGGCA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
ACTACTGCGTAGCACT	alt_2989_RC	7	12	15	11	17	7	9	8	15	8
TCTTTGTCCTGACCGA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
CTGTATTCGCATCTAT	alt_2989_RC	130	202	166	128	203	128	238	118	218	120
GGATACTTCGTGTCGT	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
CATTCTTATGTTATCT	alt_2989_RC	15	12	11	9	8	11	11	9	12	2
TTACGATTGAGTAAGC	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TCTATTCGGCCCAGAA	alt_2989_RC	0	9	4	7	10	6	14	2	8	5
CCGGCACATGGCCGCC	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
TAGAATCTGGATACTG	alt_2989_RC	20	23	22	14	28	16	42	20	37	21
CCTGTTGGTTACCGAA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
AGAGTTCCACAGATTC	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
ACGTGGTGTATGGTGA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
GGTTCGGTTCTTAGTC	alt_2989_RC	23	32	38	19	37	29	49	23	39	25
AGGCGTCCCATTCTCA	alt_2989_RC	65	121	102	68	121	72	113	62	116	65
CCAAATGACCGGCGGT	alt_2989_RC	38	153	26	21	170	24	173	19	153	30
TGGTACACACCCTTTC	alt_2989_RC	11	105	29	19	143	23	109	29	125	21
AGGTATTGTCTCGGTA	alt_2989_RC	33	62	43	53	62	36	61	36	56	29
AAAACTTGGACCTCCT	alt_2989_RC	95	127	111	98	147	88	159	75	147	79
TATAAGTGCCCCCGCC	alt_2989_RC	44	37	35	48	61	29	56	36	58	25
AGTTGTGTGTATTCTT	alt_2989_RC	14	19	12	11	29	14	18	16	22	3
AAAGAAGGCCCTCGGG	alt_2989_RC	11	8	11	8	13	10	6	3	7	7
AGGACTGTCCCGGGTG	alt_2989_RC	31	59	42	38	51	23	74	34	73	35
CCGATTCGGTTTCTGC	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
AAGGCGAAGCTAAGCA	alt_2989_RC	0	0	0	0	0	0	0	0	0	0
ACCGCATGTTCCTCGC	alt_2989_RC	5	6	10	2	6	4	7	5	12	4
CGGCTTGGTCTCCTTC	alt_2989_RC	56	93	72	39	89	59	62	38	81	44
TTCGGCGTTTCTGAAA	alt_2989_RC	26	36	26	21	42	38	52	22	59	15
CGGTCGCGTCATCGTG	alt_2989_RC	32	35	32	32	35	23	54	25	29	31
TTTACTTGCCTGCATA	ref_5820_new	26	75	31	35	103	33	82	23	102	17
CAGTGGCACCGAATTC	ref_5820_new	17	36	18	23	30	19	16	13	24	25
TAAGTCGACTAAACTG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
CGCAGCCACTAGGTCA	ref_5820_new	7	15	13	11	21	8	21	3	18	7
CGATATGGATAGTCCA	ref_5820_new	4	4	3	3	5	0	2	3	0	4
TGGATGGTCGTAACAC	ref_5820_new	12	17	10	8	8	4	8	6	16	9
CTCGTTGGCCTAATTT	ref_5820_new	31	37	42	26	35	32	48	19	56	27
GGGCAGTGTTATCGTT	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GCTTTTAAGGTTTCTA	ref_5820_new	17	27	22	19	25	11	23	19	17	11
CACCTTCACCTACATA	ref_5820_new	9	14	13	9	16	4	12	15	17	12
TCGGGCGTCTGTCTAG	ref_5820_new	12	49	25	22	40	27	31	17	39	15
GCATTTGTACTTGATT	ref_5820_new	30	66	50	40	85	44	78	34	86	38
TACGTGGGCGGTTGAC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
CTCTGTGACATGCCCA	ref_5820_new	272	445	306	261	502	218	482	250	525	233
TTGCGTGTGGGCTTCT	ref_5820_new	5	23	20	12	25	13	19	11	15	12
CATGTCTGCGGCCGTA	ref_5820_new	35	24	25	21	32	19	45	17	35	26
CCGATACGAACGTACC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
CTTTGTGGAAGTTCGG	ref_5820_new	8	9	7	4	13	14	17	7	10	9
ATAGCCCGATCTATTC	ref_5820_new	33	43	39	37	58	39	66	41	72	25
ATTGATTATGAGTTCA	ref_5820_new	26	29	23	27	49	32	38	30	35	16
GGTCTCTCGTCTCCGA	ref_5820_new	21	63	48	34	56	31	59	26	63	25
GACAATCCTACTGCTC	ref_5820_new	13	14	18	8	18	10	23	15	16	9
ATGATTTCATGCTTTG	ref_5820_new	5	5	9	4	5	5	4	2	5	1
CGGGTTACCAAGCCAT	ref_5820_new	46	78	45	54	82	37	83	46	63	47
TGTAGCTTCTAGAACA	ref_5820_new	0	0	0	0	0	0	0	0	0	0
ACTGATCCGACTTGGC	ref_5820_new	52	82	53	62	93	52	104	45	100	44
AATCCCTGAGTCCTAT	ref_5820_new	28	51	27	24	54	24	42	22	56	36
TTCCTATATTGAACAC	ref_5820_new	6	9	8	6	16	7	11	7	10	3
CGACCATTCCCGGGAT	ref_5820_new	33	61	30	28	55	18	60	32	49	25
TCTTCGCAACACTATG	ref_5820_new	39	86	69	43	126	47	91	47	96	58
CCCAAGGCAGCCGGCT	ref_5820_new	0	0	0	0	0	0	0	0	0	0
CGGGGGACGGCCAAAT	ref_5820_new	127	241	194	162	251	136	257	144	257	126
TAGGGTCAGTAGCGGC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GGCTCTCAATCAAGTC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
AAGGCAATGGCTCATG	ref_5820_new	8	9	8	11	13	13	10	10	18	11
GTCTGTGAGATTTACC	ref_5820_new	15	20	24	32	29	23	46	17	27	17
GCAACGTCTTTTAGTG	ref_5820_new	25	77	27	29	61	20	76	19	94	15
AAGTTATTCCCATAGC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TAACAAAGTTGCGCGC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TCCGGGGCTATCTAGA	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GCGTCTTGTTTTTTGT	ref_5820_new	14	14	15	11	14	12	12	13	15	6
CTTGTGCCCCCCTTAT	ref_5820_new	16	28	22	18	26	17	36	19	42	12
CCCACGACACATTCAC	ref_5820_new	35	64	47	40	62	43	55	39	79	36
ACGGTTTATTGTGGGG	ref_5820_new	4	15	6	12	10	6	17	8	12	5
TTAATGGCATGAGTAA	ref_5820_new	12	15	19	14	19	18	23	12	28	6
AGCGAGTTTCCCCCCC	ref_5820_new	15	14	11	8	10	10	5	14	12	13
TAGGGCCTGCTTGGTA	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GCATGATTGGTGCTCA	ref_5820_new	45	108	68	52	97	56	76	46	106	42
CGGACTTGGTGCACAA	ref_5820_new	6	24	11	19	20	12	29	10	38	10
TATTGTTTAAGGATCT	ref_5820_new	8	7	7	8	7	9	9	7	10	5
AGCTCTATTGTCCAAT	ref_5820_new	30	50	43	23	46	35	56	21	53	23
AATCTCAGAGCGCCTC	ref_5820_new	6	11	8	7	16	10	12	3	14	8
AGCATTTTTGTCATGA	ref_5820_new	16	36	16	28	34	22	29	9	26	30
ATGCGGTCATATCCTT	ref_5820_new	23	24	26	29	27	8	27	20	31	13
CGTTTTCGTTGGATCA	ref_5820_new	7	12	9	13	8	4	18	12	14	5
AGGAGTCCATGCAACG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TCCCTTTTCGGCCTAC	ref_5820_new	6	13	13	13	6	9	16	7	17	12
CCGGATAATGGTGCTG	ref_5820_new	4	7	5	0	2	5	4	7	3	2
AGGAAGCACGCTTTAC	ref_5820_new	94	142	109	71	189	103	149	121	150	103
GGTACAAAAAATGTGA	ref_5820_new	3	11	12	10	9	10	15	0	13	10
TTAATTAGGTTATGTC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TAATACTATCTAATGA	ref_5820_new	18	25	14	17	28	16	41	16	34	13
TCTACCACTCAGGCTC	ref_5820_new	83	134	104	95	122	73	156	56	146	83
GGGTGCGAAATAGTCG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
CAAGACGCCTTCAGCG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
ATTCCATTTCCAAAAT	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GTCTATCGTTTTCAAG	ref_5820_new	65	127	84	60	149	92	150	93	152	74
AAGCGTCCAGTCGGAT	ref_5820_new	64	105	83	66	118	84	146	55	127	73
TTCTAAAGGGGTAATG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
CCCTTTTGAACGGAAC	ref_5820_new	40	76	55	47	71	36	69	45	71	30
TTGTTTCAGGTTCCTC	ref_5820_new	5	10	9	6	8	3	6	2	12	1
GTAGCCCTTAAGGGCC	ref_5820_new	2	7	6	6	16	15	9	5	9	10
ACGCTACAGCCGTGCC	ref_5820_new	13	48	21	26	42	24	35	18	45	15
GAGTTTGTATTTAGGC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TACCATAATTGATCAC	ref_5820_new	44	86	56	39	86	58	91	36	85	33
GATTCGGATGTTTGCC	ref_5820_new	55	110	86	69	106	64	96	57	126	54
CGCATTCTTTCATACT	ref_5820_new	14	18	24	18	17	20	26	13	33	19
TTACTCCTGTTTAATA	ref_5820_new	34	64	41	33	78	46	56	25	63	32
TAGATTTCGAAGTACT	ref_5820_new	10	30	22	18	26	6	28	10	33	17
CCACGTACCTGGGCCA	ref_5820_new	13	33	14	15	20	11	26	14	32	6
AGCAAGCTTAGATCGC	ref_5820_new	0	0	0	0	0	0	1	0	0	0
GTCGTTTCTAGACCTG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GGGTTCCAGCGGGTGG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TAAGCCCCTCGCAAAC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GCACTGTTGGCCTTTT	ref_5820_new	58	78	50	45	79	29	77	45	91	55
AGTCGCTGGTTGCCGT	ref_5820_new	21	42	27	19	42	20	43	23	39	15
TGTGTTTTGTCCGAAG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GGTCGAATGAATCTGG	ref_5820_new	21	46	23	22	46	20	49	21	48	26
CACAGGGAGGTTTATC	ref_5820_new	17	70	32	26	53	23	73	33	71	15
GACGTACATTTGCTTT	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TTGATGTGTTTGTTAT	ref_5820_new	16	33	16	13	17	13	27	11	17	12
CAATGGCCCGGACTCT	ref_5820_new	13	8	6	8	13	10	19	9	26	13
TAATCGTAATTCACTA	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GTATGATGCTGTATAG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
TTCGTAACCGTGCAAA	ref_5820_new	19	16	9	5	14	12	19	13	11	8
GCCGGCTGTTTTGACG	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GCTGATATGGGTGTGT	ref_5820_new	1	5	1	1	4	1	8	3	7	3
CCCGACCTTGATCCCA	ref_5820_new	45	98	47	62	102	39	88	37	103	42
CTGGTCTTTGTATTCG	ref_5820_new	10	21	9	9	22	13	32	18	27	7
TGTTTTTCAAATCCTT	ref_5820_new	40	56	58	38	69	41	59	39	80	35
ACCGGGTTTAAAGACT	ref_5820_new	8	16	7	5	12	6	9	6	17	5
GCGGGGCGCAGCCTTC	ref_5820_new	4	1	3	2	5	2	5	4	2	2
TTTTATCGGATATAGC	ref_5820_new	17	37	19	19	25	20	31	27	35	22
TTGCCGTACCTACTCT	ref_5820_new	60	97	50	60	82	44	136	44	101	41
GGGTTCTAGGAAGCCG	ref_5820_new	79	141	111	84	174	96	192	62	153	88
GTACAGTGTTCCTCCG	ref_5820_new	35	58	30	40	58	21	52	16	94	25
CATTTTGGCTCGGCCG	ref_5820_new	11	27	15	8	20	6	10	12	10	9
ACGCATAGTTCCCCCT	ref_5820_new	14	22	19	14	28	8	29	10	23	9
AAACAGTTCCGATTGC	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GTTTTTCAGGTTGTCG	ref_5820_new	13	14	15	9	17	12	13	6	18	5
ATTTGCATGCTTTGCA	ref_5820_new	0	0	0	0	0	0	0	0	0	0
GGTCACCGGCTGTTTG	alt_6033_new	21	30	39	40	34	22	28	38	46	40
GCCGTTAAATGTCCAC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GGCTCGGAATTGCAGC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GCCCAGGTTGATGTTG	alt_6033_new	41	39	56	54	42	37	42	35	40	36
TGTTGTCCGAGCGCCT	alt_6033_new	2	1	7	3	3	2	2	4	2	1
TCTGCTAAGAGCCGAA	alt_6033_new	53	68	62	62	42	57	38	50	41	69
ATTCAAACTGTACCTT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CGAAAGCCAGGAAACA	alt_6033_new	9	7	13	13	2	20	4	10	5	12
CGTGCGTTACTTCGAT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CCGCGTCTGTCAATTG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CGAGCTGTATCCAACG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
AAATTAGATGCTTCCA	ref_6033_new	225	186	261	260	188	218	193	213	205	235
TTCAACCACTTTGTTT	alt_6033_new	9	12	14	18	14	9	13	16	18	12
AACTGTACGCCGCATC	alt_6033_new	29	17	32	13	20	14	19	17	26	27
AGGTTAGTAGGTCGTG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
ACCGGAATCTATCCGA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TTATACGCAGAGCTAA	alt_6033_new	27	18	33	23	25	29	25	32	15	11
GACGGGACCTATTAAG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CTTAGGAATTTTTCGG	alt_6033_new	34	25	30	49	32	33	34	27	26	33
ATGGTTATAGGTTGCT	alt_6033_new	106	81	89	81	79	106	96	100	83	80
CAGTACGATTTTTGTT	alt_6033_new	8	12	6	3	7	7	6	3	2	11
TAACCCTTATAGGTTG	ref_6033_new	80	68	99	105	85	62	81	95	86	78
CCCATAACTGTACGTC	alt_6033_new	0	2	4	5	3	0	6	1	10	7
CGCGCAGTCCTGCCCA	alt_6033_new	31	29	55	42	44	49	36	48	31	42
TAGGGAAATTTATTGA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CTTCAATATTTCTGGT	alt_6033_new	32	16	34	32	21	18	9	18	15	29
GGAGAATTAGCCAGAG	alt_6033_new	73	52	99	83	60	61	55	71	44	74
CTAGCCTCATTCCTAT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CGACAGGCAATCATTC	alt_6033_new	100	84	140	114	86	107	73	113	81	78
TCGCGTCATGTCGTAC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TCGAGATGGAATCTAC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GCCTGGCATCGCTTAA	alt_6033_new	12	14	20	18	13	21	24	25	37	24
CTGTAGTTTCTCCCTA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TGATATTACCTTACCG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GTATATCAGAATCAGT	ref_6033_new	61	51	82	81	46	64	68	59	47	64
TCTAGCTATTTACAAG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TGCCGCGGTCTTGTTA	ref_6033_new	65	84	94	90	101	80	89	78	112	60
TAATAGGAACTCACCT	alt_6033_new	36	50	50	39	45	36	49	47	45	33
AATGTTCGAACCCCGC	alt_6033_new	7	2	8	4	2	5	4	3	2	1
AGCGTCGAGCGTTTTT	alt_6033_new	22	25	50	33	33	19	37	27	29	21
GCGGTATAGTATCGTC	alt_6033_new	47	40	68	48	38	38	40	41	29	36
GTAATAACGAGTTGGC	alt_6033_new	203	142	232	178	157	210	157	185	149	161
AATGGGTCCGTTTAAC	alt_6033_new	52	64	93	70	60	59	71	51	45	47
CTCATTTCGGTGGCGC	alt_6033_new	89	88	126	96	80	90	84	110	86	77
GCTTGTTCCAGACTTG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TTTGGCTCCCGACAGG	alt_6033_new	6	9	7	7	1	8	1	10	1	4
TGCCGTGTTCCAATTT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CATTTGCGCCGCCATA	alt_6033_new	37	30	43	29	28	30	26	18	29	25
GCTGTTAGTTGCGTGT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
AGTCATGGATGCACAG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CATCGTATTGAAGCCA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CCTCAGCAGACCATGC	alt_6033_new	15	70	30	35	68	23	53	25	78	16
TTACAGACCTGGTTTC	alt_6033_new	1	0	1	0	0	0	2	0	0	1
ACTGCAAACCAGTGCG	alt_6033_new	63	42	56	45	30	38	42	48	36	39
TGTAATACGATACCTC	alt_6033_new	9	1	7	7	9	10	8	6	3	7
ATCTTGAGTAGTCACT	alt_6033_new	120	100	155	104	115	97	108	96	93	93
AAAATCTAGGCCCCCG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
ATGCTCGGCATGACGA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CTTTTTTCTTTGGAAG	alt_6033_new	91	78	92	77	73	90	82	81	74	70
AACCCCTTAGAATTCC	alt_6033_new	3	3	4	8	5	3	8	4	7	2
ACCCTTCTAACTGTTA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TTCTGGTGGTATGATA	alt_6033_new	9	7	11	5	5	5	3	10	4	3
AGCTAGAATAACTAAA	alt_6033_new	25	21	45	25	27	23	22	36	12	24
CTCACCCCAGAGATTA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TTGGGAATCTGGATTC	alt_6033_new	10	7	6	6	3	8	7	11	8	9
GAGCCCTGGTATTTTC	alt_6033_new	46	26	39	49	31	46	42	51	36	38
GTAGCTACCCGAAAAA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TACGTAGGTCTGCCAG	alt_6033_new	50	42	60	48	30	54	36	35	39	38
TTTATGCTCAAAGTGG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
AGGCGGGGACCTGTTG	alt_6033_new	70	78	109	107	79	94	49	78	48	87
GACTTTCGTAATGTAT	alt_6033_new	23	5	11	10	13	11	12	4	8	13
TTTATATGGTATTCTG	alt_6033_new	66	36	101	106	43	84	55	71	66	60
AGTCCAACAGAGCCAT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TTCATGCAAGTTAATT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TAAAACGCGGTGAATC	alt_6033_new	102	87	122	102	95	88	92	108	107	91
TAAGGTCGCAATAAAG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TTTCCGTATCAGTTAT	alt_6033_new	108	81	110	86	72	101	78	78	86	81
GAGTTTCAACGCTTTT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CGCTTCGTGCTTTGGT	alt_6033_new	15	13	25	19	29	23	22	26	18	24
TCCACAACCGATTGTC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TGGGACTTCACCTCCC	alt_6033_new	11	14	16	13	8	8	5	11	15	12
AACGTCTATAGGGATT	alt_6033_new	8	6	8	7	1	12	7	10	7	7
CCACCCATTCCCGATT	alt_6033_new	22	21	16	16	20	27	29	20	29	12
TCGTTTTAACGTGACG	ref_6033_new	217	142	258	224	150	197	185	194	190	169
TAGCAGATGTTTCTGG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GGCATGCTTGTCATTA	alt_6033_new	45	41	48	47	32	58	43	48	43	43
TGGATATTACATGGCT	alt_6033_new	46	32	81	69	41	55	29	67	37	55
TCGGTGGGTTACTTCC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GATAAAAAGTTTTGCC	alt_6033_new	3	4	4	7	4	4	6	11	3	5
TACTTAGATTACCCTT	alt_6033_new	47	46	59	42	47	40	44	52	34	47
ATAATCCGGGCCGTTA	alt_6033_new	15	16	33	27	14	19	27	22	17	16
GGTACAAGACCCTTTG	alt_6033_new	35	23	54	29	21	26	18	36	26	26
CAGCGTCCTTTTTTTA	alt_6033_new	32	30	38	32	25	35	33	30	33	27
CGTTGTAACGCGGATC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CGAGTGCCTGTGGACA	alt_6033_new	67	61	96	93	81	92	71	79	77	75
CAGACTTCTGGTTTTT	alt_6033_new	46	27	65	49	41	49	30	39	28	45
GCGCCGGCCGTAAGAT	alt_6033_new	56	55	83	66	72	62	61	52	57	50
TACGTAGGTCTGCCGG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
ATGACGGCTGAGGCCG	alt_6033_new	19	9	37	21	24	37	13	15	17	22
TCTGATCCCCTGCTCT	alt_6033_new	40	26	57	43	34	47	27	50	39	42
TCGCCCCTCACTTCGT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CATTTAATCATTAGCC	alt_6033_new	19	14	32	20	16	12	12	21	11	16
AGACATCTACCTTAGC	alt_6033_new	17	21	21	22	17	19	6	30	19	36
ATTTAGCTACAGTGTT	alt_6033_new	27	19	34	34	30	22	30	25	37	20
GTGTAAGTACCGTGCA	ref_5745_new	103	98	136	143	77	97	89	118	92	119
TGCCACGGCGTGCTTG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CATTAGCCGAATGTAC	alt_6033_new	2	8	7	7	10	8	6	6	8	3
AGATGCATATTTATTG	alt_6033_new	14	21	32	16	12	19	14	19	14	20
GAATCACGGACGTCTG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CAAGTGCTCGTGCCAG	alt_6033_new	27	29	24	23	20	19	13	24	17	11
CGCCCGGAAATGCACC	alt_6033_new	16	10	21	17	12	15	13	17	12	14
GCCTCATGGGTTTTAC	alt_6033_new	116	99	156	122	112	108	110	98	100	101
TCACTCCGTTGCTAGT	alt_6033_new	38	73	48	31	58	30	74	42	68	30
GCTAAAGACTGCCCTT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GCTCTTATGTTTTGTC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TTGTTGCACCATGCAT	alt_6033_new	143	120	135	131	93	109	118	109	109	91
GTAAATTTGGTCTGAG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TGTCTGTGCACTCTTG	alt_6033_new	21	19	18	14	12	20	14	17	12	4
ATAATGGCCCCAGGCC	alt_6033_new	16	12	19	13	6	14	4	9	10	6
TATGAACACCCCAGCC	alt_6033_new	33	35	45	45	22	31	31	26	30	36
CCAAGGTGATTCTCTT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
AGTGTTTCGGGCACCC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
ATTTCTGAGATTCCTC	alt_6033_new	3	2	2	5	0	2	1	5	3	4
CTATGCCAAAAAGCTG	alt_6033_new	1	0	0	2	1	0	2	2	1	0
TAAGATTTATTCCGAC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CTGCCCCTTGGCCCCG	alt_6033_new	154	110	166	168	130	135	115	133	142	117
ACGAAACGCTGTTCCC	alt_6033_new	18	10	24	26	24	20	18	29	13	19
TTATGGTCTATAAGTA	alt_6033_new	26	16	36	33	18	27	22	21	18	23
ATCAAATATTCCTGTC	alt_6033_new	11	8	15	11	3	7	10	10	11	16
CTAGATAATTTTTGGC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GTCTTAAAGTATGCGG	alt_6033_new	17	13	30	23	13	22	18	16	11	30
TATGGTTCTGTTCGCA	alt_6033_new	42	31	51	40	35	44	43	26	30	42
AAATTTCGTGATTCTA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
AGGCCCTAATTTTCAT	alt_6033_new	20	8	21	19	13	16	19	18	17	14
GACACCCCTAATCGCT	alt_6033_new	82	54	114	112	62	65	62	72	86	63
GCCGCTTCTATTGCTG	alt_6033_new	36	43	60	47	34	43	36	50	64	23
TGGCGCGCAGCGCCGC	alt_6033_new	27	19	29	21	23	19	17	22	18	26
TCCCTAGACCACCAAC	alt_6033_new	81	65	88	87	75	82	71	76	95	63
CTATTGTTGATGTCTC	alt_6033_new	35	19	47	38	16	35	21	33	16	37
TCGGGCACTCTCAATC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TCCGGATCACTCCCAG	alt_6033_new	11	3	14	6	7	11	6	12	14	4
GAAATACCGAAGTCAT	alt_6033_new	6	1	6	1	3	1	2	3	0	0
GTCGGTTAGTCGCTTG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CGACATACCTGCAACG	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TATTTTCTCTCCGTCA	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TGAAGTGGATAGGCTT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CCACTTTTTAAGTCAC	alt_6033_new	10	16	17	20	8	6	7	10	6	5
ATCTTGCCGGGGAGGC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GCGCGTCCTTCATATT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
GGCCTGATTAACCGCC	alt_6033_new	14	10	14	19	15	18	21	14	19	18
CCTATGTGTTCTGCCA	ref_6033_new	102	104	126	121	108	98	106	104	100	89
CTGCGTGGTATGGCAT	alt_6033_new	16	21	24	17	8	16	10	6	11	19
CGGCCGGGGGATTCGT	alt_6033_new	21	30	43	34	30	48	17	28	44	33
ATCTGGTATGCTAAGT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
AAGTTCCTCCAATTTC	alt_6033_new	18	11	20	19	7	7	9	12	8	11
TCTTCCGAACTTCAAT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TCGCCAGAGACTGAAC	alt_6033_new	8	12	11	7	17	4	18	7	10	5
CCAGTTAACGGACAGC	alt_6033_new	0	0	0	0	0	0	0	0	0	0
ACCACAAGTCTTTTTC	alt_6033_new	70	52	58	75	77	67	87	62	74	62
TCTCCGTACTTTGATT	alt_6033_new	95	72	112	96	75	86	105	91	84	81
TATTACAGTTACAATT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
TAGGCGGCCGCTTATT	alt_6033_new	23	21	35	23	15	28	14	17	9	15
CCCACCGCACTCGGGT	alt_6033_new	115	116	146	135	137	125	128	133	134	113
ATTTCTTGTTATCTTT	alt_6033_new	56	26	62	57	42	44	32	48	46	49
TGGCGGTGACGAGGGT	alt_6033_new	0	0	0	0	0	0	0	0	0	0
CACATAGCAGTTAGGA	alt_6033_new	74	67	90	79	56	65	73	72	74	60
TCAATGTGCGCATTCG	alt_6033_new	14	16	12	15	6	14	13	23	9	10
TGTGGGCTCGGGTGCC	alt_6033_new	17	16	42	32	21	27	26	39	17	22
GTGCTCGTATGATTAA	ref_3951_upstream	10	17	11	11	8	7	15	7	21	7
ATAATTCTACAACGAG	ref_3951_upstream	22	31	25	20	36	16	38	17	30	27
GTATTGCCATATTTGT	ref_3951_upstream	16	28	18	12	30	14	24	9	22	9
ACTTCCGGTGAGTCGT	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
AAGCGCGTCTGCGGGA	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTCTTTAGCGTAA	ref_3951_upstream	16	32	22	20	32	14	29	13	25	15
GAAGGCGTGCGCATTC	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCGCTCATCGGAT	ref_3951_upstream	11	8	10	9	18	7	24	9	15	4
TTCGCTCGGACCACTT	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTTACTGTCATT	ref_3951_upstream	1	0	2	0	4	2	6	2	5	1
ATTACGGGGATTCTGG	ref_3951_upstream	13	25	18	17	26	14	21	4	25	9
AGACTCGGCTTATATA	ref_3951_upstream	15	39	25	21	40	31	51	28	48	14
GCTAGCAATGGTTAAA	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
TCTGACATAACATTAA	ref_3951_upstream	2	3	2	0	2	1	6	1	5	0
GAGCGATGGCAATTCA	ref_3951_upstream	11	38	28	24	33	22	22	25	29	22
AATAGCTTATCAGAAA	ref_3951_upstream	4	18	3	2	9	3	9	3	17	4
GACCCACATGTGTTGC	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
CGGTAAATCACTGTCT	ref_3951_upstream	15	49	20	6	71	7	55	10	75	11
TAGGAGGTATGTGAAC	ref_3951_upstream	9	11	6	4	16	6	19	11	12	9
AGTCACATCCGCAGGC	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAATTTGTTGAAA	ref_3951_upstream	12	26	12	10	22	10	20	21	21	9
ACTCGCTTGTGCTTGT	ref_3951_upstream	33	71	29	37	73	26	87	27	84	42
TGAGCGGATGGGTGAG	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
TGTGATTAGCTTATAA	ref_3951_upstream	3	11	2	6	9	9	6	3	13	5
CCGTCAAAAAAGTCAT	ref_3951_upstream	14	84	21	18	73	25	101	25	86	16
GTGATGTTTTGGGCTC	ref_3951_upstream	9	29	23	19	24	11	33	14	19	13
CCTAGTAAGTTGGCCA	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAGGACTATTTGG	ref_3951_upstream	1	2	3	2	3	1	1	0	3	0
GTCTATTTAGTATCCA	ref_3951_upstream	11	32	7	7	24	5	17	8	13	6
TCGTTCCTCTAGAACA	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
ACGCACGGCGTTCCCC	ref_3951_upstream	23	49	64	45	59	26	57	23	71	40
ACTTCAGTTTTTCTCG	ref_3951_upstream	14	14	9	20	21	11	19	14	23	13
CTGGCTATCTATGGTT	ref_3951_upstream	36	104	59	50	111	39	99	39	98	54
CTCTCCCGTTTTGAAA	ref_3951_upstream	73	335	68	84	349	79	339	70	353	75
CTTCGTGCAATTCATC	ref_3951_upstream	38	72	42	33	59	38	77	23	76	28
ATCGCGTTTTGCGTTC	ref_3951_upstream	22	34	44	16	43	28	41	35	52	18
GTAATCCCCAATTTTC	ref_3951_upstream	7	4	5	1	2	4	5	3	5	2
TTTACGATGGTCCGAC	ref_3951_upstream	40	73	57	43	58	35	79	24	77	30
GCGGATACAGCGTGCA	ref_3951_upstream	18	19	21	10	22	16	24	14	38	11
CTAATTCGCCTTAAAC	ref_3951_upstream	23	39	21	26	36	20	58	18	56	22
GCTAAGGAACAAACGG	ref_3951_upstream	13	11	14	14	27	11	18	9	24	10
CTTGCTTGGTACAATG	ref_3951_upstream	25	28	12	18	34	13	28	16	25	11
TCGTTGGATCTCTCAT	ref_3951_upstream	2	8	4	2	4	1	6	0	1	1
ATGCTTTCTTGTTTCC	ref_3951_upstream	17	32	20	23	35	13	30	10	44	17
GCTATCGAGCGGCACG	ref_3951_upstream	3	11	7	7	11	3	13	4	7	4
TGTTACACCTGCATTA	ref_3951_upstream	20	33	38	23	42	15	31	22	33	15
CATACTTTTGTGATGT	ref_3951_upstream	37	88	54	44	68	30	81	52	89	47
CCTCTTACTTTAAGCT	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
GTATCGGGCCTGACAA	ref_3951_upstream	4	12	5	6	9	5	6	6	9	3
GCAGTCGCCCCGTATC	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
CATCTCAGCTGGGTTC	ref_3951_upstream	8	6	9	3	8	2	4	4	10	0
AACAGACATTATTCGC	ref_3951_upstream	25	72	54	34	75	40	63	40	74	31
TATTGTTTGATCTTTC	ref_3951_upstream	7	8	12	6	8	1	9	10	12	4
CTGGATGCCTCATCAA	ref_3951_upstream	21	30	26	33	32	17	37	30	36	19
CTTGTAACGAGTCTGA	ref_3951_upstream	2	0	2	0	0	1	3	3	2	0
TCAAAACGTATAACTT	ref_3951_upstream	4	6	5	4	7	4	7	2	5	6
AAATCAAGGCATAAGC	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
CACGCTCCCCTCCTAC	ref_3951_upstream	0	6	0	0	6	0	4	1	2	0
TGACTCTTCGTTTCGG	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
AACATATGGCTCTGGC	ref_3951_upstream	23	42	23	29	45	21	42	32	51	20
GGAGATCGATGGAATG	ref_3951_upstream	36	69	38	48	57	33	61	42	73	18
CGGTCGGGATAATGTG	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
GTTCACAACTTGGATA	ref_3951_upstream	7	7	15	12	8	13	6	6	5	8
AGGCACCTGATCCCGG	ref_3951_upstream	2	6	4	5	6	3	10	1	6	3
CTTTGTTCCGCGTCGT	ref_3951_upstream	49	56	54	58	75	42	83	49	46	47
CTAATATCGGAATTGT	ref_3951_upstream	13	20	20	9	38	10	16	14	25	12
TTAACATCTTTTCAGT	ref_3951_upstream	17	37	17	17	27	12	24	10	35	12
AAGGCGTCGGAATACT	ref_3951_upstream	7	13	15	4	15	10	11	10	12	8
CAGCCTTGGTCACGGC	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGAATGGGCTCCG	ref_3951_upstream	6	8	11	3	6	2	7	6	3	3
CCGTCCGATCTCATTA	ref_3951_upstream	0	21	2	3	21	2	17	4	17	2
CAGCTGTTCGATAGTT	ref_3951_upstream	12	29	11	12	26	12	23	10	30	15
ATTACCCTTGTCAATA	ref_3951_upstream	56	96	74	53	107	59	116	49	109	45
TATTCATATGTCGGCT	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGTTCCAGGACCC	ref_3951_upstream	6	18	11	17	10	13	17	12	25	12
GGTCTCTTCACATTAG	ref_3951_upstream	11	5	9	5	18	12	11	7	20	14
TTGGAGTAAGTTCATG	ref_3951_upstream	35	48	33	32	40	24	68	31	57	21
TAATAGGTCAGGTTTA	ref_3951_upstream	5	20	18	7	21	10	22	9	34	15
CACATTGTCTGCACGT	ref_3951_upstream	21	41	21	18	66	20	43	19	42	14
GGCACCACTTCACAAT	ref_3951_upstream	9	14	10	6	24	7	19	13	17	8
TATGGTAAAAGTACTT	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
GGATGATATCTCTTAG	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
AACTAACTTTCCATCT	ref_3951_upstream	0	0	0	0	0	0	0	0	0	0
TATTCACGTAGTCTCG	ref_3951_upstream	16	28	24	24	27	17	25	21	15	14
GCTTCTATGACTGAGG	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TTTGACCTGAGGCCCT	ref_2029_fdr	566	186	639	621	183	532	189	541	215	559
CGCGGAGTATACAAGA	ref_2029_fdr	220	56	279	241	56	208	66	218	60	187
CATTCTCGCTCAAACA	ref_2029_fdr	105	34	104	133	40	100	31	97	42	93
CCTCATTGTATCTGTT	ref_2029_fdr	2	2	7	4	3	4	3	4	3	7
TCCAGGATTCTACTCG	ref_2029_fdr	11	8	16	14	5	14	7	15	4	11
ATAACTATCTTATTTC	ref_2029_fdr	114	23	125	92	28	87	25	93	23	83
TTTTCTTTTTTGCCTC	ref_2029_fdr	156	35	180	132	51	127	25	132	42	132
GACCAAGTGGTCGTCC	ref_2029_fdr	144	38	159	145	44	147	40	142	43	129
GGAACCTGGTTCTAGA	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTATCCGGTGTTG	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCAATGCCTGCTATAT	ref_2029_fdr	267	88	304	290	100	261	92	277	85	233
CCTCTGAAGGACGCCG	ref_2029_fdr	234	82	318	258	70	228	103	275	93	193
GCAACCGTTCGACTCA	ref_2029_fdr	62	54	72	64	56	43	53	45	52	49
CTGGTTCCTACCAATA	ref_2029_fdr	83	31	98	103	27	88	25	88	35	90
CACGCACACGTTCAGC	ref_2029_fdr	218	89	258	201	93	171	69	206	82	210
GTTTTTCCGCGCACGT	ref_2029_fdr	84	27	94	83	21	82	24	77	30	59
CTTGCACCCACCTTTC	ref_2029_fdr	229	75	279	290	68	270	97	222	73	209
CGTACGAGCCGTGAGA	ref_2029_fdr	33	14	53	38	10	31	13	49	11	40
ATCTGCTCGACGGGTC	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CTCACAGGTAAACCTA	ref_2029_fdr	7	2	13	1	0	12	1	8	2	7
AGTTTCACCCTTCAGG	ref_2029_fdr	106	34	115	110	27	107	44	100	42	81
TGGCATTGACCGTTCC	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CTTGAACCGGTCCAAG	ref_2029_fdr	125	47	144	121	57	107	42	144	45	106
GTGATTACTATCAGCG	ref_2029_fdr	55	25	117	77	11	73	25	75	35	70
TAGTACGCTTCATCCA	ref_2029_fdr	57	16	43	34	16	46	16	51	6	40
AGCGGGAGCTCCAGGC	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
GCGCGATATCCTTTAG	ref_2029_fdr	24	4	33	34	9	28	7	31	13	35
TTCAGGGTTAATGCAC	ref_2029_fdr	75	24	79	83	29	76	35	54	33	49
CTCGCTTGGTTATTAT	ref_2029_fdr	47	9	41	48	12	38	20	39	10	27
TGGATTACGGATGTGT	ref_2029_fdr	26	13	46	34	8	34	17	32	10	35
TGAGATCGCGCGTGCA	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGATTATGTAAAA	ref_2029_fdr	48	17	53	46	19	57	21	45	11	52
CGTTGTTATTCGGCAT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGTCGTGTTCGTT	ref_2029_fdr	87	39	109	103	42	74	41	92	44	80
ATCGAAAATCCCGTCA	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGGTCTAATAGAA	ref_2029_fdr	96	39	132	118	21	116	37	78	34	109
AACTTTAAATATGTTA	ref_2029_fdr	44	11	81	44	25	37	20	52	16	55
CTTCGCATAGAGTTTA	ref_2029_fdr	32	20	47	54	17	50	30	40	13	25
ATGTTATCATTAAGCT	ref_2029_fdr	114	38	138	119	41	110	36	83	68	87
CGTCATAAGGCAGGTC	ref_2029_fdr	308	124	358	305	118	300	101	321	130	260
GTCATTATTGGGGGTA	ref_2029_fdr	93	31	122	118	43	112	34	119	35	102
AGTAATCGGTTTGCAT	ref_2029_fdr	23	6	25	12	7	23	7	14	2	12
CGCATCGTTATTTCTA	ref_2029_fdr	51	12	52	56	17	30	20	51	17	53
TTTGCCCTGAGGCCCT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTACAATTGGGAG	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGGACCCTCTTTG	ref_2029_fdr	13	5	27	23	8	30	9	21	9	27
GCTGGGCATTCGTATG	ref_2029_fdr	73	21	75	75	16	73	37	66	28	62
TCTGTTTGCCACAATG	ref_2029_fdr	588	170	693	621	228	464	197	550	195	473
CTAAGTGCGCCGGGCC	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGCGATTCAAGGC	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATATGCTGTCACCCAG	ref_2029_fdr	101	22	131	104	33	95	39	108	23	97
ACCTCTTGCCGTATTG	ref_2029_fdr	29	8	42	30	11	22	15	24	12	28
GTCTGACCAGGTAATT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTGTGCGTTACAT	ref_2029_fdr	120	57	144	123	37	108	49	107	39	105
ATACGAGATAGTAGAG	ref_2029_fdr	145	51	174	163	35	170	63	188	86	128
GTGTTGTCCTGGAGCA	ref_2029_fdr	354	119	445	398	151	345	148	366	154	328
TATGACCTGAGGCCCT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CTCCGAGTTCCGGCTT	ref_2029_fdr	96	25	106	120	38	95	25	84	29	91
ATTGATGTTTAAAATT	ref_2029_fdr	236	78	277	241	80	288	69	251	75	236
TGTCGTCTGGCGCCGT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTGACACAGTAGT	ref_2029_fdr	87	30	70	67	35	68	37	62	29	51
CAGTTTATGCCGTGGA	ref_2029_fdr	81	30	125	135	32	106	32	98	31	105
TGGGCGTTTTTCCGAC	ref_2029_fdr	31	9	41	31	10	23	14	28	11	27
GGCAAATATTACGCTT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTGCTTTTAATCG	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CACTTATAATGACAGT	ref_2029_fdr	49	15	51	37	19	28	17	45	9	51
TTATTTTAACGTGGTG	ref_2029_fdr	162	61	200	176	70	147	64	153	82	153
ATTCGACCCACATAAT	ref_2029_fdr	28	5	36	38	12	25	16	32	19	25
GACCACCCAACTAGCT	ref_2029_fdr	129	54	171	144	37	132	54	120	56	111
TACTGGAAGCTTATAG	ref_2029_fdr	127	55	126	106	44	127	31	111	37	92
GTTTTATTGAGTCCCA	ref_2029_fdr	128	56	171	128	66	134	55	115	63	133
CGCGCGCATATCAGCA	ref_2029_fdr	64	25	85	65	37	53	32	54	29	46
CTCCATCGGGCGCCTT	ref_2029_fdr	5	2	9	6	8	9	3	10	5	9
CTAAGCGCTTTTATCG	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
AGGTATCTTCATAGAT	ref_2029_fdr	10	6	17	16	4	13	1	15	9	12
TAGAGAGGTACGGTGT	ref_2029_fdr	72	30	120	91	41	66	38	79	22	78
TTACAGTTTTGAGTAA	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
CTCTAGAATTTTGCTT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCAAAGCCTGCTATAT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGAGACTACGTGT	ref_2029_fdr	148	59	212	212	55	171	60	160	54	129
ACTTGCTGAGTTCCTC	ref_2029_fdr	127	34	180	150	44	121	53	120	57	123
TATCGCTTTTCATTGC	ref_2029_fdr	111	37	119	122	42	113	47	114	41	84
GAGATTGCGTCAGATG	ref_2029_fdr	25	10	41	34	12	46	10	25	7	32
GAAAGAGATGTTATAT	ref_2029_fdr	236	61	268	240	69	226	69	230	82	175
CTTGACGCCCGCAGCA	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
ACCTCATCTTTGCCCA	ref_2029_fdr	118	37	202	191	47	157	54	147	67	128
ACCAGCAAAAGTCAGT	ref_2029_fdr	6	6	8	7	5	4	6	15	7	9
CTTTCGTTTAGGAACA	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
TATGTCTCTCTTCGTA	ref_2029_fdr	104	41	109	103	37	85	30	89	38	97
GTGATACTCAGCTCTG	ref_2029_fdr	229	71	275	257	88	205	102	237	86	210
TAGTCATTTCTCCAAT	ref_2029_fdr	283	76	317	273	119	255	104	260	102	246
CCCCGGTGTTAGCAGG	ref_2029_fdr	51	79	71	69	78	54	93	45	79	39
TTCTGCCATGTGTATA	ref_2029_fdr	22	9	19	31	4	21	9	9	7	13
GGACAATACTGATCAC	ref_2029_fdr	171	32	207	197	44	158	67	141	62	157
GGGAGTGCATGAGGTT	ref_2029_fdr	213	75	278	263	84	230	79	235	95	193
TTAAGATCTTCCTTCC	ref_2029_fdr	124	37	144	129	30	122	33	132	38	118
CGCCCTTCTTCCGGTA	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
AAGAAGCCGGTGTTGA	ref_2029_fdr	93	16	134	86	30	89	33	101	39	83
TTCCAAACTGCGGCAT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTTTACGGATAT	ref_2029_fdr	80	28	103	90	26	78	29	86	39	78
CAGCTCCTTAAGATCT	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
GACCGGGAACGCCCTT	ref_2029_fdr	24	6	16	15	5	13	5	17	4	22
CCACCATCACCCTAAT	ref_2029_fdr	1	5	1	0	1	1	2	1	4	3
GGGGCCGCTTCATTGC	ref_2029_fdr	121	50	198	159	45	157	57	140	56	124
CAGCCACGTATCTTAC	ref_2029_fdr	32	31	36	31	22	29	44	40	33	30
TTATAATCTCATTTTC	ref_2029_fdr	127	47	152	120	43	138	56	141	52	81
TCCCACTCAAGCTGTA	ref_2029_fdr	34	17	48	51	13	41	15	36	8	28
CGTTAGTGGATCCGGC	ref_2029_fdr	34	19	36	45	17	27	12	27	13	25
GGGTTGTGATTATTTC	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
GGCTACCACTGCATGA	ref_2029_fdr	70	34	99	92	29	65	30	78	29	64
ACCCAGCTCGCTGCCG	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTAATCGTGGTAG	ref_2029_fdr	0	0	0	0	0	0	0	0	0	0
GAATTTTTATTACTTG	ref_2029_fdr	48	30	76	45	12	55	11	44	13	41
GACATGACCGGATAAA	ref_4574_reverse	89	87	104	93	119	81	116	85	110	93
ACTCATGGTTTCTCGC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCTTTCATGCCCG	ref_4574_reverse	30	36	44	41	31	31	38	36	25	25
ATTCATATGGTAACGG	ref_4574_reverse	6	11	19	10	22	7	15	6	13	9
TTGATTGCCGATATGG	ref_4574_reverse	53	64	58	75	72	41	93	50	81	47
AATTATCCAGTAATTG	ref_4574_reverse	12	22	18	25	19	16	19	14	10	14
AATTCCATGGGCCGCG	ref_4574_reverse	26	28	52	35	32	28	29	33	34	27
GGTACCGTGCGTATAT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
AAATGGTGTCCGCTAC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCAAAATGTCAGA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CATTGCGACTACGAGT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
AGATATTTGCTTTACG	ref_4574_reverse	12	6	9	8	8	9	8	9	12	11
TGGTACTATCTAGTCC	ref_4574_reverse	33	26	36	30	24	38	43	45	41	29
TCGTCCGGATATCATG	ref_4574_reverse	55	51	63	59	57	25	66	38	62	46
TTTCTGGGTTTCCGCG	ref_4574_reverse	88	81	126	100	75	117	100	90	108	88
TCCAGCTGTCCAATGG	ref_4574_reverse	23	12	15	14	17	18	14	11	22	25
GGAAACACATGCTCTC	ref_4574_reverse	13	15	24	19	11	20	15	12	12	21
GGAATGGTTCTCGCTG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGCTTTAGGGAAT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
AGCATTTCAAGCTGGG	ref_4574_reverse	54	56	47	51	49	45	47	45	49	45
GCTTTTCCATGGCGTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGTTTAGGCGTCA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
GGAAAATTACTGTCTT	ref_4574_reverse	16	7	22	21	18	18	13	13	17	14
AGAGAGTCCGTCAATA	ref_4574_reverse	3	1	3	1	1	1	6	1	2	1
CCTTCATGTCTGGCAG	ref_4574_reverse	35	28	31	28	28	21	30	31	39	22
CTTTTGACTGGATACG	ref_4574_reverse	16	15	17	28	20	18	19	17	20	10
TTTGTTTGGCTTGTCG	ref_4574_reverse	34	22	32	28	23	22	27	26	26	26
GTCTCGGACATGGGTG	ref_4574_reverse	60	39	63	65	55	69	51	57	38	34
AGCGCCTTTATACGTA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CACCTTTTGACGTGAC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAGTTACGTCCCC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCGTGCAATCGCG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTTAGACGCTGCT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CACTTCCATTACATGA	ref_4574_reverse	13	10	12	7	17	14	17	12	16	13
CTCGCTGCGATGGTGA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
ACACCTTGTGTGTCTA	ref_4574_reverse	6	1	5	3	3	4	4	2	2	2
ACGGTTAAGGTGCAGC	ref_4574_reverse	17	18	22	18	20	18	20	14	23	12
TTATAGCAAGCGATAT	ref_4574_reverse	137	133	156	125	122	124	140	145	151	107
TTTACCATGTTCATTG	ref_4574_reverse	10	15	19	25	8	9	22	17	17	7
TTCACCGGTTGATGGT	ref_4574_reverse	2	2	3	3	9	4	6	5	5	6
GCGCGTTCAGATTTTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TTAAACAAGAGTACAG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TGACAATAGACCCTGA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCTCTGTTACTTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTAACCAGTTAGT	ref_4574_reverse	11	13	12	14	11	8	19	11	13	9
GTACATTCGCCCGTAT	ref_4574_reverse	12	55	20	16	39	11	70	16	79	17
AGGATGATTGTAGGGT	ref_4574_reverse	16	23	35	29	17	13	24	23	23	9
GCACTAAAGGATATTG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
ACCTGGCTTTACGTTA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTTGGGCAATCCG	ref_4574_reverse	12	6	9	12	11	9	2	6	14	8
GCTCTAGTTTGGTTAA	ref_4574_reverse	2	8	4	8	10	3	9	3	6	6
GGCAACATAAAGTCTT	ref_4574_reverse	24	20	26	25	20	25	22	16	23	25
TTTGCATATTTTAGGA	ref_4574_reverse	32	35	45	38	30	28	33	35	29	28
TTCGTGGTTTTGTTTA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCAACGGCGCAAT	ref_4574_reverse	9	14	13	15	11	23	15	3	11	6
GAAGCCAAAGTGCATC	ref_4574_reverse	49	45	50	43	49	41	44	28	39	32
CGTGTTTAGCTATATC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTAATACACTCGT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTATGTAATGTGA	ref_4574_reverse	12	16	15	22	18	18	24	20	24	30
AAATTTCGGTTCAGTT	ref_4574_reverse	23	17	29	21	17	26	23	14	28	24
CTCAATAATTTCAAGC	ref_4574_reverse	6	8	11	3	6	6	4	5	4	5
TATTCGTCGAGCTAGG	ref_4574_reverse	79	65	68	56	71	45	65	47	78	41
TTGCATGTCATGTTAC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTCGAAGTTTTCT	ref_4574_reverse	29	33	27	33	35	44	43	17	32	20
GACTATCTGACCGGAT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCTAATTCTCTACTTG	ref_4574_reverse	54	61	59	60	50	52	53	60	66	50
CCCTAGCTGTGTTCCG	ref_4574_reverse	2	1	6	0	1	3	1	1	1	0
AGTGGAGACTCCTTTC	ref_4574_reverse	56	43	55	64	62	33	50	70	54	49
CCCATATTCCTCGGTG	ref_4574_reverse	9	14	14	8	8	15	7	13	16	9
AGGAAACGCTTGCCAT	ref_4574_reverse	15	11	13	14	11	10	7	10	17	9
ATAGGCATTACTATTA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TGGATCCATAAGTCGC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
GGATTCAGATCTACCA	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
GGGGACTACCGTGTGA	ref_4574_reverse	1	0	0	0	1	0	0	2	0	0
CCTGTAAAAATTTCCT	ref_4574_reverse	4	10	9	16	6	10	4	2	7	5
CTTATAAGTTGGCTTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CCCACAGTTTGTGTCC	ref_4574_reverse	20	28	27	21	42	24	20	23	26	10
TCGTGGAAGAATGTTC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTCGGTACCTTTG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
AGTACCGGCATCCGGG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CCTATTATTATGCGTC	ref_4574_reverse	0	3	0	0	0	0	0	0	0	1
TTGCTCTATACTTGGT	ref_4574_reverse	58	66	62	68	53	61	81	64	62	53
CTTGCTTCTGTTCCTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCATCCAAAGGTC	ref_4574_reverse	1	2	4	1	3	2	5	1	3	2
ACACTCCTATTAGTGT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CAACTATTTGTATTAC	ref_4574_reverse	122	109	164	121	100	93	99	127	108	108
ACTTGCGGTCTTCATC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CAGCAGTTATGTCGCA	ref_4574_reverse	28	47	41	26	69	23	50	27	57	14
ACGTTAGGATTCATAG	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
GTAGAATGGTGTTTGT	ref_4574_reverse	30	40	65	40	28	36	43	29	38	36
CCTTCCGTTAAACTTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCCGGACATGGTC	ref_4574_reverse	17	22	27	31	30	27	26	23	18	19
GCCGCCCTATAGTAGC	ref_4574_reverse	21	13	27	19	13	13	23	22	18	25
TTAATACCGTGTTATA	ref_4574_reverse	48	76	107	70	94	61	97	49	96	60
TTAAGCGTTACTCTTG	ref_4574_reverse	24	25	18	18	16	21	21	24	29	19
GCTAGTTACCACCCGT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGGGCCCTGGTGC	ref_4574_reverse	19	18	34	35	19	23	18	32	28	22
TCGGCTTCCCGCAGCC	ref_4574_reverse	18	15	16	22	15	18	20	19	26	21
TGTAGTCTGCATTTAT	ref_4574_reverse	8	11	6	8	11	3	9	10	7	3
ATTACTTTCGCGCCTT	ref_4574_reverse	4	5	8	14	1	6	3	12	13	11
GTGTCGTAAGCGTTTG	ref_4574_reverse	61	76	78	68	73	73	69	54	77	48
GGGGTTGGCTCCACAG	ref_4574_reverse	26	29	38	27	18	25	33	29	23	20
CACTCACAGGGACGTA	ref_4574_reverse	16	21	26	28	12	14	27	24	23	25
TACTCAATATTTCGTT	ref_4574_reverse	11	3	18	16	10	16	11	16	10	13
TTGAAGAATTGTTGAA	ref_4574_reverse	7	0	1	3	3	5	2	4	6	2
CCCGCTTCTTCGTAGC	ref_4574_reverse	40	38	43	36	37	38	39	21	45	29
TTACAAATTAGAAACT	ref_4574_reverse	102	84	106	98	112	76	90	67	111	106
GAAGCTCGTAGCATAC	ref_4574_reverse	46	44	49	62	52	34	53	35	60	47
TCTAATTTTTCAGCGT	ref_4574_reverse	20	18	21	14	10	10	19	13	11	5
GGACCGCTCTTCGGCC	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
GGTTACACGGATATTT	ref_4574_reverse	105	80	107	106	95	99	95	87	94	72
TGAATCTTCTCCTTCA	ref_4574_reverse	3	0	0	1	1	0	0	3	1	0
TTACCAGCGCCGCAAA	ref_4574_reverse	15	19	15	19	16	19	25	14	30	22
TAGAACCTACAGTGTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
TCTAACAAGTTTTCCT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGATTCTCACATT	ref_4574_reverse	31	30	32	34	41	38	35	30	30	18
CCTTCGGTTAAAGGAT	ref_4574_reverse	61	80	84	90	81	52	82	64	86	44
TCCTGTCTTAGTCTCC	ref_4574_reverse	13	6	12	16	13	5	13	7	15	5
CAATTTCATAGGTCTT	ref_4574_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGGAGTGGAAGGG	alt_6128_new	3	2	6	13	3	6	1	3	4	2
CGGCCCTTTTTAGAAT	alt_6128_new	2	9	4	4	0	2	2	1	6	1
TTCATTGCTGTATTGT	alt_6128_new	2	2	5	6	2	7	2	5	3	3
GGAAGCTACAATATAC	alt_6128_new	107	74	115	97	79	96	71	90	90	79
CATGGGTACCCTAATT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GGCAGTCGTCGGGCGT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
AGGTTCTTCACTGTTT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
CTCTTGGGGCTGGGCC	alt_6128_new	148	103	215	160	128	156	129	152	115	165
CGTCGACTCTATGATC	alt_6128_new	0	0	0	0	0	0	0	0	0	0
GCTAGTTCTTGCTCGC	ref_6128_new	267	249	336	260	267	231	294	241	276	257
CTGCCAGAATCTAAGA	alt_6128_new	0	0	0	0	0	0	0	0	0	0
TATGTCTTGGAGAAGA	alt_6128_new	52	38	79	55	53	48	47	72	37	47
AAGTTGGGTCGTGTCC	alt_6128_new	0	0	0	0	0	0	0	0	0	0
ATTTACTTCTGGCCCC	alt_6128_new	0	0	0	0	0	0	0	0	0	0
ATGTATCCTCTGCTAT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
TCTTGCCTTCATATAG	alt_6128_new	55	65	80	64	49	52	45	51	40	47
TCGGTTTTAGTCCCGA	alt_6128_new	2	8	13	6	5	9	8	4	7	9
GAATCAAACTTCATAG	alt_6128_new	109	69	97	111	92	90	86	90	76	93
CTCGTTTGTGCATACC	alt_6128_new	31	25	37	25	34	22	37	22	34	30
GTGTTTGTTTCGCGTT	ref_6128_new	220	184	257	217	179	213	198	210	209	200
AGCATGGCATCGGTAT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
CAATGTCATTGTGTTA	alt_6128_new	8	11	17	17	13	13	9	12	11	10
CGGGGTACGATTAGGC	alt_6128_new	5	4	3	3	7	5	8	6	10	2
CAGAGCAGACCCTGCT	alt_6128_new	2	1	5	3	1	0	2	0	2	3
TGCCTAGCCACTATCA	alt_6128_new	31	44	57	42	65	61	58	42	46	43
AACAATCCTAACCTTT	alt_6128_new	6	5	10	2	3	14	3	9	15	6
CGGTAGTAATACTCCG	alt_6128_new	25	21	35	24	24	38	21	27	38	32
AGTAGTTTGGACTTGG	alt_6128_new	48	33	40	45	50	43	35	46	40	26
AATGACTATGCACACG	alt_6128_new	72	60	91	56	46	62	44	72	47	47
CGCATTGCCATTTTTA	alt_6128_new	38	19	36	25	26	28	21	24	24	35
AGAGGTTGGCAGGTCC	alt_6128_new	116	112	136	140	103	105	96	137	114	122
GCACACCAGGTGGACC	alt_6128_new	71	48	80	70	40	51	49	72	46	60
ACTCGCGTCGCCCTAG	alt_6128_new	0	0	0	0	0	0	0	0	0	0
GGTGTCATTTATCTAT	alt_6128_new	35	17	32	30	23	31	27	30	23	25
TGTAACTTCTTTTCAC	alt_6128_new	72	46	76	79	44	64	61	69	69	54
TCGTAAGGGTACCTCG	alt_6128_new	0	0	0	0	0	0	0	0	0	0
CTTATGGCCCCAGACT	alt_6128_new	35	23	39	42	19	25	23	25	34	27
ATTTTGTCATCACTTT	alt_6128_new	57	47	76	49	51	48	25	63	53	44
ACGCTTTAAGCTTATT	alt_6128_new	17	5	16	17	9	12	12	12	9	10
GATAGATAGTTCCAAG	alt_6128_new	0	0	0	0	0	0	0	0	0	0
GCCATGAAGCTGTTCA	alt_6128_new	8	7	9	5	6	4	7	9	5	6
GATGAATCCCCACCGA	alt_6128_new	12	12	9	12	8	10	9	11	8	9
AAAACCTATGTCTTTG	alt_6128_new	0	0	0	0	0	0	0	0	0	0
TACTTCTTGGGTAAGA	alt_6128_new	140	98	198	180	121	183	142	148	127	149
ATTATGGCTGCTAGAA	alt_6128_new	245	169	304	244	150	212	170	234	161	191
TAACTGGACTTAAACG	alt_6128_new	48	35	57	43	32	47	39	37	44	56
GCTGCTTACATTGAGC	alt_6128_new	5	6	4	6	6	9	11	2	4	3
ATAACCTTTGGTGTGG	alt_6128_new	20	21	14	19	17	18	23	17	13	14
TTACGTAAACTTAGGA	alt_6128_new	0	4	3	2	7	1	4	4	0	3
GTGATGGGAGTTCACA	alt_6128_new	0	0	0	0	0	0	0	0	0	0
CCCGGGGTGTATTCGG	alt_6128_new	12	18	17	14	24	10	21	11	20	11
CGGTGCCGCCATAACT	alt_6128_new	43	29	55	43	20	47	23	45	25	36
AGAGGTCGGGTATAGC	alt_6128_new	10	14	22	10	10	11	11	21	7	9
GGATGAAATACAGCTG	alt_6128_new	8	5	10	6	4	8	4	7	3	8
ATTATTTCCCATGCCA	alt_6128_new	0	0	0	0	0	0	0	0	0	0
GTTCTTCCCAGTAGTC	alt_6128_new	31	20	49	41	31	30	33	31	19	19
AGTACCACGTCAAGCC	alt_6128_new	9	4	12	6	5	9	7	4	5	6
CTTTGGCGTATCACGT	ref_6128_new	8	7	10	15	12	6	9	8	13	6
TTGCGACATCTGTAAA	alt_6128_new	0	0	0	0	0	0	0	0	0	0
TTGTGTTTTTCGTGGG	alt_6128_new	353	282	443	391	300	394	285	330	331	336
TCTCTGGATGGCGTGC	alt_6128_new	2	4	2	1	1	1	0	2	1	0
CGCGCAATATTAAGTG	ref_6128_new	71	66	85	54	52	60	60	74	58	64
CTCATTCAATCATGCT	alt_6128_new	7	2	3	3	4	6	1	3	7	4
GCTATCCTATGTTAAC	alt_6128_new	70	40	74	56	51	43	45	43	47	48
TCCGTTTGCAGTGCGT	alt_6128_new	0	0	0	0	0	0	0	0	1	0
GGGATCTCTTCTCTAG	alt_6128_new	0	0	0	0	0	0	0	0	0	0
ACTTAGTCCAAAAGCG	alt_6128_new	2	2	4	0	3	1	3	1	4	1
GTGTTGTAGGCCGGGG	alt_6128_new	24	21	34	21	30	15	23	23	37	19
GCGCAAGTGCCCCGCA	alt_6128_new	13	16	21	11	6	15	12	17	16	11
TGGGTCAGGTTGTTTT	alt_6128_new	21	20	25	23	24	18	32	34	32	23
ACCTTAAGTACCTGAC	alt_6128_new	36	45	50	33	52	55	50	53	52	35
AAACTGCAATGGTATC	alt_6128_new	0	0	0	0	0	0	0	0	0	0
TTAGAGTAAGCCTTTG	alt_6128_new	2	3	8	4	0	6	4	5	6	8
GAGGTGGCTTCCCGGG	alt_6128_new	22	21	39	27	37	33	23	33	16	29
TATGACCTCCTCGATT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
GGCGCGCGCTTTTACT	alt_6128_new	34	38	29	32	27	35	32	52	23	45
CCTGATCAAATTCTGT	alt_6128_new	41	22	46	29	18	31	29	39	34	28
GGAGGCGTTCGCCTGC	ref_6128_new	292	238	325	310	277	249	268	242	292	221
TTCCCTATCCTGTCGC	alt_6128_new	0	0	0	0	0	0	0	0	0	0
ACGGCGTTCACCTGTG	alt_6128_new	0	0	0	0	0	0	0	0	0	0
GTACTGCGATTTCGTG	alt_6128_new	103	87	161	112	104	131	106	110	109	115
GTATACCATCCTTTAG	alt_6128_new	41	33	44	52	30	46	35	41	46	48
ACTCGAAGAGTGAAGA	alt_6128_new	46	42	53	61	45	49	38	45	48	24
CCTACCCATCGTCTTT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
CTGCCGCACGCAGGAC	alt_6128_new	180	136	219	182	123	163	145	146	168	165
CAGCGATCATTCCTAC	alt_6128_new	97	89	131	85	81	104	113	82	118	96
GGTAGGTACCTTCTAT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
GTCCTAAGCACGGTCT	alt_6128_new	35	33	43	22	24	33	31	20	36	35
GATGACTCACCTGCGT	alt_6128_new	0	0	0	0	0	0	0	0	0	0
CGTTTCGAGATCATAT	alt_6128_new	62	54	84	83	44	47	36	60	44	75
CTGGCACTATTGCGTT	alt_6128_new	148	144	250	209	147	173	159	165	153	151
CGTCCCGGACGTGTTC	alt_6128_new	18	21	18	38	22	29	17	26	16	21
CGGCTTAAAATCCTCG	alt_6128_new	92	58	108	103	86	85	64	104	73	83
ACCAATTTTACGCAGT	alt_6128_new	42	33	39	38	34	27	34	38	35	30
ACCGGGGTAAACTTTG	alt_6128_new	58	56	59	76	54	45	41	56	46	44
TTGAGAATCGCTCAGT	alt_6128_new	42	33	65	55	34	41	42	42	40	53
CCTTTATCAGCTCCGA	alt_6128_new	9	10	7	9	18	5	13	6	2	12
GATGCTGGCTTTACGC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGTTTATGCTGAC	alt_5163_fdr	165	219	215	167	211	141	242	135	236	149
ACGTGCCGCCACCTTC	alt_5163_fdr	41	28	31	39	40	28	24	24	36	37
GGGGCAAAACCACCGG	alt_5163_fdr	0	7	0	1	1	0	6	2	2	0
TATTAGTACCTACTAG	alt_5163_fdr	42	63	44	39	55	37	56	38	57	31
TATCAGGGATAACAAT	alt_5163_fdr	95	115	109	127	108	87	122	82	111	69
CGTCAAGAAAAATTTT	alt_5163_fdr	6	10	8	12	11	6	17	9	12	9
CGTGCGCTCCTATAGC	alt_5163_fdr	8	4	9	9	6	5	9	4	6	9
CTGGTCTCAGAGACCC	alt_5163_fdr	68	76	62	67	94	51	73	64	84	50
GGCTAATTCCCCTTAT	alt_5163_fdr	76	90	76	74	111	87	96	87	99	72
GGAGCTGCTGTATCGC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTCGGTTTCTTT	alt_5163_fdr	38	48	69	52	46	30	41	39	43	30
CTCTACTCCGCTAAAA	alt_5163_fdr	11	29	34	19	39	17	38	21	32	9
CTTGTCTCTTAGTTAC	alt_5163_fdr	23	26	20	11	24	18	25	17	25	14
TGGCGGAAATTGTTTA	alt_5163_fdr	47	40	54	34	35	33	46	23	41	33
CTTTTGCTCTTCATAT	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCGCTACCTCATT	alt_5163_fdr	38	78	55	43	62	37	68	43	49	38
TCTATTGATATTCGGC	alt_5163_fdr	78	94	88	57	111	65	93	66	98	74
GTGCACTCCCACTGAT	alt_5163_fdr	3	17	13	12	21	5	11	12	19	5
TCCTCGAACCGTTGCA	alt_5163_fdr	105	131	100	104	186	99	148	86	175	87
GTTAGAAGTGTTTCGT	alt_5163_fdr	111	143	132	113	130	119	161	115	160	117
CGTTTGCGTATAACGC	alt_5163_fdr	15	12	10	12	13	12	20	9	22	15
CTCGCTTGAAGGGGTT	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
TATTTTTGCTAAACCG	alt_5163_fdr	23	31	28	24	31	27	30	21	30	23
TCGATGTGTGAAATTA	alt_5163_fdr	6	8	13	3	14	9	8	8	8	8
AGAGCAGTCCTGCCAA	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
GCGCATGTAACTTTTA	alt_5163_fdr	46	53	41	43	42	49	40	38	40	20
TTGTCCTGGTTTTTCT	alt_5163_fdr	39	48	50	45	49	41	49	33	39	36
TTCCCAAGAATGCATC	alt_5163_fdr	2	3	10	1	6	3	4	1	2	0
GGCCTTAACAGTTTCG	alt_5163_fdr	57	92	101	56	106	74	96	73	109	59
CCTGGAAACCTTAACC	alt_5163_fdr	53	87	65	63	67	57	103	48	69	65
CCATGAGAATGATACC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
GTAGATCGCCGCGAGT	alt_5163_fdr	29	38	44	27	42	21	45	17	27	31
CGAACTGTGCATGTAT	alt_5163_fdr	34	28	26	25	35	21	33	22	47	23
ACCTCTGCGTACATAT	alt_5163_fdr	29	38	30	29	43	22	36	22	47	24
TTTCACTTTTCCGCTC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
ACACATTTCCATCGGT	alt_5163_fdr	0	2	1	1	7	2	3	2	4	0
TTGATATTTCGTTCCA	alt_5163_fdr	58	54	60	59	69	51	68	63	94	35
GGCCGGACGCAGGGTC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCTCCGATTTTGG	alt_5163_fdr	31	59	54	29	75	39	63	43	59	35
ACCGGAGGTTCGCTTG	alt_5163_fdr	47	58	53	36	72	37	66	27	56	41
GGTTCTTCCGCAAGCT	alt_5163_fdr	4	20	17	13	12	9	20	9	18	10
TTCCGCAGTGGCGACG	alt_5163_fdr	68	86	67	74	84	63	74	64	75	63
GTGTGTGTACTTAAGC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
TTATGTCTCGTGCTAT	alt_5163_fdr	30	31	37	33	28	27	23	23	40	16
GCACAAACTACATTTT	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
TTATTGTACGTTAGTG	alt_5163_fdr	16	35	36	15	37	16	42	12	30	12
TTTGAACGTAGTTCGG	alt_5163_fdr	45	37	39	28	62	29	46	31	39	23
AGTCGGCGTCAGGCCC	alt_5163_fdr	220	205	280	220	234	215	249	185	280	199
CCAATTTATTTAACTC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCCCGCTTGCTCA	alt_5163_fdr	31	55	33	43	37	29	46	20	45	20
ATTGACTTGGGTGAAC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTTCCGTCTGAA	alt_5163_fdr	35	50	57	35	40	38	29	37	36	36
GTTTAGCCTGTTTGCT	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTTGTATCGTATC	alt_5163_fdr	4	7	4	0	6	3	7	1	5	2
GACTTTGGGCTGAAAT	alt_5163_fdr	71	113	107	85	95	91	133	90	111	84
GAGGCCCAGGATCATG	alt_5163_fdr	6	4	8	6	7	3	10	1	2	4
ATTCTTTTCCTCATAC	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
CGGAACATTTGCACTA	alt_5163_fdr	21	25	23	26	39	16	28	21	24	23
GCTCACTAATTCTGTC	alt_5163_fdr	7	20	14	12	17	16	22	6	40	12
CTCTTGTGGGATGTTT	alt_5163_fdr	54	99	95	77	82	69	86	70	89	74
CCTCAGAGGGGATAAG	alt_5163_fdr	28	32	37	40	40	29	29	36	41	26
ATCTGTGAACTAAGAG	alt_5163_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCACTGGCTTTGC	alt_5163_fdr	10	17	16	11	8	9	8	11	16	11
GCGCCAGCGTATATTA	alt_5163_fdr	4	5	13	3	5	5	11	12	6	4
GACTTTACGAGTTTTT	alt_5163_fdr	22	36	16	22	21	18	20	12	30	28
GGGTACGTAGTTGTTG	ref_223_reverse	25	26	23	28	19	14	30	18	34	18
TTTCCTTATACTATCT	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
GTGATCCCCGTCAGGT	ref_223_reverse	9	42	13	18	62	19	72	15	76	14
AATCAGTGTCCACTCG	ref_223_reverse	8	9	8	9	10	6	5	8	12	10
GGTTATGCTAGTGCCC	ref_223_reverse	7	2	6	4	2	8	3	5	9	2
ATGTAGCAGCCAAGTT	ref_223_reverse	23	37	30	19	23	26	24	28	30	16
CAGCGGCCACATGCAG	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTCGGTCGGATTT	ref_223_reverse	7	21	9	6	17	11	19	7	24	1
CAGGTTGCGTTAAGTC	ref_223_reverse	102	134	135	151	130	121	121	94	157	112
CTAGCTCAGTTCTACC	ref_223_reverse	25	59	38	22	62	21	43	15	69	19
GGTATTTTGACTAAGC	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
GCTCACATTATAGTGG	ref_223_reverse	47	48	51	41	54	45	66	29	50	46
CCCCTGCTGGCCTCTC	ref_223_reverse	31	33	36	39	26	25	34	29	31	37
ACGCTAGTCCTTTCAC	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTTTGCCTTAGGG	ref_223_reverse	8	8	8	8	10	12	14	5	14	8
TGTGGACTCTCGTGAA	ref_223_reverse	8	15	10	6	12	12	12	8	20	7
CATGTCCCCGGCTGTG	ref_223_reverse	5	5	8	4	9	5	7	4	5	6
AACAGTGAAACCTTAC	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTACAGATAGGGT	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
TACCGTCCTCGCCTGC	ref_223_reverse	1	2	1	0	0	3	1	0	0	0
ACGTTACGTGTAGACG	ref_223_reverse	0	0	0	0	0	0	0	0	1	0
CCGCTCCTTTTCTTAC	ref_223_reverse	4	2	6	11	1	2	3	4	8	6
TATCATAGCCGTATCT	ref_223_reverse	2	1	4	1	0	1	1	0	3	0
CCCAAGATTGATGTAC	ref_223_reverse	19	20	16	11	12	4	21	16	18	19
CCGACGGCTTCCACGA	ref_223_reverse	158	188	188	140	149	157	166	105	187	123
TGTATCCGGTGAGAGT	ref_223_reverse	25	20	24	18	41	15	30	17	22	14
CTGGACCTCAACGCAT	ref_223_reverse	53	73	83	64	77	67	74	59	60	51
GGCTGCCCGGAGCTAG	ref_223_reverse	19	15	17	16	15	14	15	8	19	10
CTGTGCACAGATGTTT	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCAGATATCCTGG	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGTGTTTGTACCA	ref_223_reverse	30	47	38	32	55	33	45	41	61	26
AAGTCCTCCCGGGCAG	ref_223_reverse	8	12	8	5	10	10	8	11	8	5
TCCATATGGGTGTTTT	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
CTACAGCCTCTTCTTT	ref_223_reverse	38	59	33	36	55	48	54	32	65	35
TCTGGGGTTAGATCGC	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
TCTATTAGATGCGTAC	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
CGATGTAGTGTTGTAC	ref_223_reverse	12	7	5	7	10	12	15	10	11	6
ACCCCTGTAAAGTGAG	ref_223_reverse	0	3	6	2	4	5	0	0	6	0
ATCAAGCCGAAAAGCA	ref_223_reverse	72	71	86	95	82	82	78	68	74	62
GCTCATTTTCGATTTT	ref_223_reverse	34	41	40	43	44	39	32	23	39	36
CGGGTGTTGGGCCGGG	ref_223_reverse	35	31	36	34	34	35	21	28	49	28
GCGAGGGGCCCACCTG	ref_223_reverse	230	257	235	212	205	202	239	199	185	203
GCTCGCTCATTACTGG	ref_223_reverse	19	29	25	24	23	15	21	20	33	24
CGATGCACTGGAATAG	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
TGTATATTACACTTAT	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
CCCAACAAACTTTTAA	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
TCATTTTGGAATATGC	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
CTAAGTCGAGTCAATG	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
ACGGATACGTCGGTAT	ref_223_reverse	2	1	1	0	0	3	3	1	0	1
GTCCATTTGAATATTC	ref_223_reverse	21	33	19	26	22	18	31	20	29	18
ATGCGTGGCTGAAACT	ref_223_reverse	32	45	49	44	36	52	51	28	47	39
CTCGTCGTGTCTACTG	ref_223_reverse	15	18	17	19	15	8	24	14	29	17
GAATTTACTGCTGTCA	ref_223_reverse	1	0	2	4	2	0	2	1	2	3
CTGTACTTCCTACTTT	ref_223_reverse	59	41	65	50	33	56	37	39	60	43
CGCGTCCAACTGGTAC	ref_223_reverse	22	34	25	33	27	22	37	27	35	29
GTCCGTCAGGCCTGCT	ref_223_reverse	12	25	24	18	26	23	14	20	22	15
GTCTGAGAATTTGAAG	ref_223_reverse	20	16	12	16	17	13	14	16	26	11
GAGATTCTAGTGCTCA	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCCTCCTGCCGCT	ref_223_reverse	46	57	43	39	54	38	59	39	41	32
GGTGTACCTACTTTCT	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCTATATGCCTAC	ref_223_reverse	32	37	20	26	37	13	35	31	33	23
TGATTTGTTTTTAATT	ref_223_reverse	8	11	11	16	9	11	18	7	12	9
AGTCATATACCCCTTT	ref_223_reverse	32	36	46	37	44	33	52	38	45	50
CCTCGCAATTTTTATG	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGACAGCTTCTCA	ref_223_reverse	2	5	7	4	6	7	2	5	1	6
TACTGACGACACGTTT	ref_223_reverse	23	26	32	24	18	21	24	22	28	20
CTGTTCGTATTCAAGA	ref_223_reverse	23	14	19	16	24	15	23	24	29	17
GGCGTGACTTAACGGC	ref_223_reverse	1	0	0	0	0	0	0	0	0	0
CTCAACTAGACGTCTA	ref_223_reverse	181	208	210	151	228	189	214	160	238	171
TAGGAATTATGCGTGT	ref_223_reverse	18	18	20	17	10	12	27	19	17	20
CTCAATCCTTGTGAAC	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGGCAGCGTACCT	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
GCCCAGGTAGCTCCTA	ref_223_reverse	0	0	0	0	0	0	0	0	0	0
CTACCAAGGTTCGACG	ref_223_reverse	18	28	25	28	33	14	35	19	46	12
AGTATTTTTTTGGTCA	ref_223_reverse	19	29	17	23	35	15	44	21	30	25
CTGCTCTGTAGTGATG	ref_5114_upstream	222	138	281	262	133	225	175	228	155	196
TTCCTTCTGAGTTAAA	ref_5114_upstream	143	88	132	170	67	149	82	109	81	120
TTTTTCGAGCTAGTTG	ref_5114_upstream	148	76	172	157	71	115	64	128	80	121
TTGTCAGAAGGCTCTG	ref_5114_upstream	107	75	107	120	44	99	62	83	62	82
TTTTGTGCGTAATTCC	ref_5114_upstream	187	131	238	232	116	188	107	188	126	200
TAGGCCGACATGTTGG	ref_5114_upstream	21	7	13	7	6	12	10	11	5	9
AGTGTTATCGGCTTGC	ref_5114_upstream	36	16	70	64	28	44	22	41	28	45
TTCAGATGCGTGACTA	ref_5114_upstream	53	16	57	37	20	40	33	46	32	44
GTAGTGTCGTGTTCGT	ref_5114_upstream	1	6	4	2	1	5	3	4	2	3
GTCTATTAGTCATATA	ref_5114_upstream	76	31	65	58	41	62	29	45	28	60
GGTGCCAAGACAGGAC	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
CACTCTATCTCCGCCA	ref_5114_upstream	36	24	51	48	18	29	20	35	19	38
AGAATGATCTGGGGGT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCGTATACAGACC	ref_5114_upstream	22	17	26	41	17	31	17	21	13	25
CCGTTTGTTGTCACTG	ref_5114_upstream	39	23	42	32	29	43	30	59	24	28
CTGTAATTAGTTAGAG	ref_5114_upstream	123	73	157	146	76	112	79	134	99	93
TGTCAGCTTCCGGTTT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAGTCATGGTTGT	ref_5114_upstream	165	93	213	164	112	167	88	136	95	141
AAGCTGCGTTGGTCAT	alt_5114_upstream	105	65	111	97	48	88	45	89	60	86
GGACTGGTCCATTCAG	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTCATGTACGTCC	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGGTCACACGACA	ref_5114_upstream	51	21	70	75	32	49	25	70	26	62
TAGCATCGTAATACCG	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCAGTGTACCTTG	alt_5114_upstream	36	15	36	21	19	32	24	38	16	23
GCGTATTGTATAGTCT	ref_5114_upstream	26	11	28	30	16	26	18	20	16	35
GCTTCCGTGACCTGTC	ref_5114_upstream	87	45	87	91	43	72	46	91	45	72
ATTTCAGTCCAGCGTA	ref_5114_upstream	38	29	40	44	19	39	26	34	16	42
GTAGATCCAAATAGAT	ref_5114_upstream	23	8	20	27	14	20	17	16	12	14
TGTGTAACCTCTAGTA	ref_5114_upstream	96	62	138	127	81	95	74	119	65	92
TTGTCAGCCAGGATTA	ref_5114_upstream	74	39	103	75	48	75	46	72	49	64
TTTATTCAATCATACA	ref_5114_upstream	27	27	30	39	19	33	18	24	11	37
TCACACTTGTATGTGG	ref_5114_upstream	59	28	57	58	52	54	40	68	28	62
GATAGAAACACCCGGA	ref_5114_upstream	118	77	165	129	73	126	78	117	59	105
CTCAGTCCTAAGGTCT	ref_5114_upstream	321	217	389	312	176	339	222	345	227	302
TTATCCCTCAGATCCA	ref_5114_upstream	79	33	92	79	46	65	59	72	43	62
TCCTATCTCATGTTTT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
GTAATAGTATGATGTT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGGGGCTGTGTTC	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGTTATTATCCGG	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATCTATCATCGACTCT	ref_5114_upstream	12	12	33	38	14	29	13	17	18	19
TTTCCATCAAACTCGG	ref_5114_upstream	25	11	27	32	23	25	31	32	32	25
GCTCCTGCATTATGGT	ref_5114_upstream	202	108	266	181	91	165	104	184	104	167
CCTATTGTGATTTTTT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTAAACGTGCGCC	alt_5114_upstream	59	28	67	56	33	60	32	54	31	64
CCGTGTTTACTTGCTA	alt_5114_upstream	14	63	13	14	54	14	40	18	52	13
GGTCCCAAGCCTCTGA	ref_5114_upstream	57	25	75	51	23	34	34	47	23	51
CCGGAGGTCTGGGGGT	ref_5114_upstream	27	51	52	34	46	22	51	36	46	19
AATGTTTTCTCAGCCA	ref_5114_upstream	55	46	74	82	33	51	38	53	39	51
GGTCGTTCAGCGTCTG	ref_5114_upstream	234	202	255	195	181	183	186	177	229	175
TATTTATAGGAGTTGT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
TTTCATTACTAATCTC	alt_5114_upstream	273	134	288	295	111	282	146	273	133	247
CGGTACATGGATCTGC	ref_5114_upstream	32	16	38	28	20	22	18	37	16	23
GCCAGAGCTCACACCG	ref_5114_upstream	31	18	32	42	19	28	30	35	26	24
ATCGTCTTTAGGTTTA	ref_5114_upstream	315	176	374	295	176	268	166	310	187	248
CGTGAATGGTCCGTAC	ref_5114_upstream	15	12	22	18	7	12	10	18	18	12
GCTGTGGAGGATTACT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
GTTTACACCCTCCACT	ref_5114_upstream	4	0	3	10	3	8	3	5	9	5
CGGTCGCAAGGAGTTC	ref_5114_upstream	83	29	76	54	44	74	34	53	27	51
CCCGCCTTCACTGTCT	ref_5114_upstream	270	151	328	284	132	224	137	241	166	222
TAATATTGCTCCGGGT	ref_5114_upstream	54	27	92	82	36	58	23	65	38	56
AGATATGAACTATTTG	ref_5114_upstream	46	25	66	51	25	58	29	51	25	53
AGTGTACGTTGATCTG	ref_5114_upstream	44	25	55	33	23	42	23	44	20	36
TTTTTCGCCTTTGCTC	ref_5114_upstream	111	52	117	101	63	92	57	97	73	74
GCGTAACTGCTAAATC	ref_5114_upstream	79	56	110	92	49	87	49	85	27	82
ACTGTTGGGGTCGGAT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCTACTCATAGT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTATATGCTCTCT	ref_5114_upstream	4	0	9	1	4	2	4	4	3	0
TAAGTCCTTAATTTAG	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
AGTCCGAATCAGGTTA	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
TCATGCCGTTATATTC	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
CGAAAAACCCATGTTT	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTACATTTTTTTA	ref_5114_upstream	39	21	37	51	13	35	18	32	27	45
TTTAAATCTCCGAGCA	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
TTATAACTCTAATTAT	ref_5114_upstream	51	23	65	70	25	51	29	56	29	47
TATTTCAGATACGCCA	ref_5114_upstream	528	194	633	546	228	483	214	513	269	446
TTTTAGTCGCTTAAGT	ref_5114_upstream	122	69	153	140	74	112	80	126	84	102
ATGGGCCTGGCAGCTG	ref_5114_upstream	339	178	414	347	153	314	201	295	178	294
GTGTAGAATTTGAACC	ref_5114_upstream	32	21	56	47	21	39	20	40	24	24
GAGAATAAATTCGTCG	ref_5114_upstream	17	7	31	21	11	17	17	16	12	15
TGCTAGACGATGCTTA	ref_5114_upstream	35	20	31	38	16	33	27	38	33	50
TTTCTTATTCTGCGGA	ref_5114_upstream	274	162	384	318	162	301	170	302	147	284
AACTTCTTGACGTTGC	ref_5114_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTCTGTAATGCGA	ref_5114_upstream	41	24	46	48	22	30	14	25	20	26
TTATGCCCTTCTACCC	ref_2099_reverse	29	26	27	26	29	21	44	22	22	16
TTACTTCAACCACTTC	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGCTGTAGAAGGT	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
ACAGTATATCGTCGTG	ref_2099_reverse	9	23	21	11	21	10	19	10	13	9
AGCTGCACCTCCTTTG	ref_2099_reverse	42	47	39	30	23	34	31	37	45	28
AAAAGGTGTGTATCCC	ref_2099_reverse	4	4	6	8	8	7	10	3	7	11
CTATGAGAGCGCTTCT	ref_2099_reverse	32	51	35	46	44	41	34	35	58	31
TTGATATACGTCTCGT	ref_2099_reverse	39	53	68	53	64	33	62	46	68	31
GTCGAATCTTTTGGCC	ref_2099_reverse	2	10	6	5	8	1	15	4	16	3
CATCTTGCGGTCACTT	ref_2099_reverse	0	3	2	1	2	1	3	3	0	1
TGACAAACCCTGGAGC	ref_2099_reverse	35	51	37	27	36	26	33	31	36	25
AACTTACTCATAGTCT	ref_2099_reverse	3	8	12	3	9	5	9	3	16	10
CCGGGACCGATGGTGG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCTTCGTGGATTC	ref_2099_reverse	80	80	67	60	100	70	90	69	94	70
GTCGTGGAGATTACAT	ref_2099_reverse	4	7	6	9	6	6	9	5	8	2
CCTGTCTACGTGCCAA	ref_2099_reverse	5	8	14	6	17	5	16	6	14	11
GAATGGGTGACCAGTC	ref_2099_reverse	23	20	32	27	27	17	23	17	25	15
CGGGGGAGGAAATAAG	ref_2099_reverse	22	36	35	27	25	28	42	14	33	29
CTCAAAGCTAGGTGAG	ref_2099_reverse	34	35	42	31	33	30	33	27	50	27
CATGCACGGTCGAGAT	ref_2099_reverse	8	7	6	4	6	4	2	1	7	2
TGATTCGATTGTATTA	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCCAATACCCCTC	ref_2099_reverse	47	71	60	54	67	58	76	45	74	41
TCGTGTAATCGACGCG	ref_2099_reverse	31	35	26	21	25	18	41	10	37	22
TACTGTCCATTAGTTA	ref_2099_reverse	18	32	24	20	24	13	28	18	29	18
TACCTGGTCTATATGT	ref_2099_reverse	7	15	8	8	19	9	13	6	23	8
CCGTCACGACCCTTTT	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCATGCTAATCGC	ref_2099_reverse	34	45	38	36	32	17	34	23	31	30
ACGGTCCTTTAAGCAT	ref_2099_reverse	71	90	69	83	73	55	104	61	75	65
TACGGTGCTCAGTTCG	alt_2099_reverse	39	73	50	44	72	40	62	33	72	36
GGAATCTGCTTTATCT	ref_2099_reverse	35	47	42	38	46	44	56	33	59	33
TGTAGTAAACTTTCCC	ref_2099_reverse	31	44	34	34	41	23	60	14	42	21
CTGCCAGATAAAGCGG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
GTATGTGTCCACTCCG	ref_2099_reverse	34	61	33	32	42	25	50	27	57	30
CATGCGACTTCGGTGC	ref_2099_reverse	6	4	6	5	7	4	9	6	5	5
TTTATCGTACTCGCAC	ref_2099_reverse	7	11	4	2	8	7	5	11	6	8
TCTTTCTAAGTTTCGT	ref_2099_reverse	12	25	22	27	20	21	18	12	30	11
CACGAGGGGGGTGGAA	ref_2099_reverse	21	7	15	8	10	12	13	13	17	9
GCTCGGCCCTGTGGGG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGGTCTGCGGTAC	ref_2099_reverse	63	55	80	67	62	67	76	59	71	52
TGTGTTTACCTGATAA	ref_2099_reverse	109	220	192	141	166	154	208	112	236	112
GTTTAATTTTGAGCTG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
CCGGCCGGTCCGTCAG	ref_2099_reverse	4	22	3	13	22	6	14	5	16	8
TCATTGGCGAGGGCCG	ref_2099_reverse	72	95	93	70	94	79	104	70	83	82
GCTTTGGACTCGCGTA	ref_2099_reverse	149	221	186	173	205	165	217	128	218	157
TTATCGTTAGATTTCG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
ACCGGAGACTCTTCAG	ref_2099_reverse	35	60	47	25	58	31	40	33	40	21
TGAGTGCGCGTTCGTG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
TTGGAGACTGATCCCG	ref_2099_reverse	41	56	51	32	88	47	76	48	71	53
TTGTCTGGCGCATGGT	ref_2099_reverse	9	2	7	3	2	0	5	2	3	0
AATTTCTTCAGGTGTG	ref_2099_reverse	16	22	12	20	20	12	31	10	28	14
GCGTGTTCGTTATCTA	ref_2099_reverse	35	85	41	45	57	31	52	38	51	45
TTTATTTGAAACAATC	alt_2099_reverse	70	99	104	99	144	82	126	66	102	75
ATCGGAAAAAAGTCGG	ref_2099_reverse	33	50	48	33	25	38	44	27	49	29
TTTTACAACGACCTGT	ref_2099_reverse	12	11	10	6	7	4	9	8	9	6
ATTTTATCGTTTCTCT	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
ACCAGCCTTCCTTGAG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
CATTCGCACCTAGTGC	ref_2099_reverse	32	49	47	50	57	16	43	23	60	27
ATCCAGACGTATCCAG	ref_2099_reverse	14	5	16	12	12	7	4	7	19	6
GGTTTTTCTCGAACTA	ref_2099_reverse	26	33	31	21	31	23	39	21	37	23
CCCCGTGGGTGTATTG	ref_2099_reverse	7	22	10	9	22	6	28	5	24	7
TAGTGGCTCTCCGGTG	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGGCGGTGCCATT	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTTCTCCAGAGAC	ref_2099_reverse	122	152	113	114	124	129	145	95	132	99
AACCTCCATGATTATC	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTTAGTTTACTAC	ref_2099_reverse	42	46	45	41	70	45	61	50	63	33
TGATAGAGTCGGTGTG	ref_2099_reverse	25	29	36	25	38	31	42	37	50	31
AGGGGATAGTCTTCAT	ref_2099_reverse	60	85	81	69	78	87	92	70	97	47
ACCGTCCATGCTCTGG	ref_2099_reverse	69	83	72	50	84	61	85	49	76	51
AGTACTCTTGTATACG	ref_2099_reverse	20	26	23	23	46	36	32	28	49	22
TTTTACCGTTATGCGT	ref_2099_reverse	70	103	80	51	79	50	75	53	92	43
CCTGGGAGTTCGCTAT	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGTACAAAGCAT	alt_2099_reverse	95	165	132	102	151	109	139	103	157	87
AGCATTTCTTAGATTA	ref_2099_reverse	13	20	24	26	18	25	36	24	22	15
TTGGGATACCGATGCC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
GATGGCAGTAATTGGG	ref_2099_reverse	121	132	110	103	133	87	152	78	155	92
GGCGGTCAAGTCTAGA	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGGCTACCGCAAG	ref_2099_reverse	1	18	4	6	5	4	6	3	4	2
AACGAGTGGCGTCGCG	ref_2099_reverse	37	34	25	29	45	20	43	32	39	20
CCGTCACGCCCCTTTT	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTTTAACGTGTTG	ref_2099_reverse	42	37	39	28	47	23	48	28	54	28
TACTAGATTTAGTAGC	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATCGTATTCAAA	ref_2099_reverse	0	0	0	0	0	0	0	0	0	0
ATTTACTGACCCTTAA	ref_2099_reverse	28	23	38	27	35	31	47	24	35	30
CGAGACAGCGTGCGGA	ref_2099_reverse	259	286	331	277	302	266	327	224	340	219
CACTCCGCAGATCTTG	ref_3516_RC	0	0	0	0	0	0	0	0	0	0
TGAGCGGGCTAGGCGA	ref_3516_RC	52	29	55	52	36	62	36	43	31	50
TTTATATTGACTTGAA	ref_3516_RC	41	25	51	40	13	34	13	37	20	34
CTCGTTTTGCAGCAAG	ref_3516_RC	760	376	982	754	382	756	412	703	389	707
CTTCAGTCTCCATCTG	ref_3516_RC	165	63	189	165	97	138	99	148	79	140
TGTCTCGAACCAATGT	ref_3516_RC	21	4	31	18	2	24	19	16	9	19
TTTTCTTTGGCACACA	ref_3516_RC	45	29	64	42	18	44	21	30	27	45
TCAATGTATGCGTGCT	ref_3516_RC	33	29	36	38	20	38	28	38	17	44
AAGCCCATGAGAATTT	ref_3516_RC	51	14	69	39	21	38	20	51	18	43
GTGGGTTATAGACAGC	ref_3516_RC	0	0	0	0	0	0	0	0	0	0
TAATTTATGCCAAGTT	ref_3516_RC	44	9	54	50	17	46	16	32	19	43
CCCCGGTGTAACTAAG	ref_3516_RC	47	70	78	64	69	63	76	70	74	55
CGGTCGGGTTCTCGTC	ref_3516_RC	84	33	108	95	38	69	38	96	46	89
GGTGTAACTGCGGGTG	ref_3516_RC	133	75	144	155	75	122	59	134	80	111
CCGTTTTCATACTTGG	ref_3516_RC	20	12	39	24	22	20	18	25	18	30
ATCCATCGACTGATCC	ref_3516_RC	20	28	23	28	35	19	38	26	36	27
CAAGCTCTTTTCATAG	ref_3516_RC	34	9	34	34	9	36	19	28	16	25
TTGTCCAGACGATGGG	ref_5951_new	16	32	18	17	26	19	30	15	22	24
GTATGTTGCGGTACCT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
GGGCGTAGCTCGACTG	ref_5951_new	96	147	99	96	133	80	151	94	145	87
TCGAGATCTACCGTGA	ref_5951_new	0	0	0	0	0	0	0	0	0	0
GTCCAGCGATATGTCC	ref_5951_new	0	0	1	0	2	1	1	1	1	1
GAACAGGTTCGATGGA	ref_5951_new	30	38	26	28	29	20	41	23	39	18
TAATCCCCGGTTTCAA	ref_5951_new	5	15	6	10	18	7	18	4	20	8
AGCGCGCTCAATTCTT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
CACTGATGCTCATATG	ref_5951_new	5	14	9	6	8	11	12	7	13	8
TCGGTACGCGCTTGTT	ref_5951_new	22	30	21	25	32	18	52	13	36	16
TTTGATGTCCTACGAT	ref_5951_new	22	35	22	30	46	14	24	17	38	14
ACCTTACAATGTTCAG	ref_5951_new	0	0	0	0	0	0	0	0	0	0
CCTGAAACAGACGTTA	ref_5951_new	34	55	47	23	48	43	49	26	45	26
TCCAGCTCTATTTCTT	ref_5951_new	0	9	2	3	13	0	14	2	17	3
CTGCTATACTGTTCGG	ref_5951_new	14	21	14	15	27	17	34	12	32	12
ACGCAACAGTCATCAG	ref_5951_new	53	91	80	69	103	68	98	62	114	58
CGAATGTATTTTGCAG	ref_5951_new	36	56	39	38	54	41	64	47	71	41
TCCTGTAAACCTATTT	ref_5951_new	1	12	11	4	12	6	8	3	16	9
TGGGAGACCGTGAGGA	ref_5951_new	11	21	27	26	41	18	29	27	33	20
AAAGTAACGTATTCTT	ref_5951_new	3	12	12	6	5	3	4	6	9	15
TTGTCAAGCAATTTCT	ref_5951_new	1	0	1	1	2	4	0	1	2	1
TAGAGAAACGAATGCT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
GAATTTGGTGTTTACG	ref_5951_new	16	14	13	20	18	12	17	10	28	10
TGTCTTATAGTACGTC	ref_5951_new	11	30	22	24	36	18	34	17	39	13
ATGTTTCGGCGTACCA	ref_5951_new	4	27	23	22	25	17	24	23	31	8
TTGGTCTTTAGTGCTT	ref_5951_new	30	51	34	28	43	25	46	17	53	15
GATGATATTGGTTTTC	ref_5951_new	5	5	5	3	5	4	9	6	5	9
ATAATCCGAATGGATT	ref_5951_new	50	89	68	58	79	54	67	49	100	51
TGGTTGCTGTTTGGTG	ref_5951_new	5	13	8	10	14	10	12	12	12	9
AGAGTTGATGGTCTAG	ref_5951_new	0	0	0	0	0	0	0	0	0	0
TCAAGGCATTATGCCT	ref_5951_new	31	85	53	43	62	52	93	39	79	29
TCCATTTTGCGTGGAT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
TAGCTCCGATCGCCTG	ref_5951_new	0	0	0	0	0	0	0	0	0	0
TGCATCCACCGATCGT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
GGCGCACATTATAAGG	ref_5951_new	7	18	20	6	15	18	16	5	16	8
CCCTCAATTCGCACGA	ref_5951_new	50	126	86	71	124	70	109	73	144	51
GTCTCTACTTCGTGAG	ref_5951_new	2	4	7	9	9	8	14	2	12	4
CCCATTGGTGGGGCGA	ref_5951_new	0	0	0	0	0	0	0	0	0	0
GATTTCTATGTGCCTG	ref_5951_new	39	58	30	28	52	24	54	28	54	34
GGACGGAACCCTAGCA	ref_5951_new	102	121	110	84	135	95	157	91	166	100
TTTGGACATAGTTTTT	ref_5951_new	0	1	0	1	0	2	1	0	0	0
CCATCTATCATGAATT	ref_5951_new	18	26	26	17	34	25	30	23	29	16
CAAATGGCTAGCTACG	ref_5951_new	21	29	31	18	33	18	31	19	29	23
TTGCGCGAGTTGCACA	ref_5951_new	0	3	3	3	0	2	1	0	2	3
CCAGTGTTGGTCTGCT	ref_5951_new	22	48	37	40	49	44	41	25	68	23
TTTGCCATCTCCTGTA	ref_5951_new	9	37	16	7	34	8	35	14	45	10
GGTGATCCAGCTGGCA	ref_5951_new	31	48	39	28	42	28	42	28	49	27
ACAATTGTATACCTCG	ref_5951_new	12	19	7	12	22	8	17	11	22	9
CTGTGAGCCATGCACA	ref_5951_new	89	121	86	66	113	85	152	66	135	71
TTATGGATCTCCCCCC	ref_5951_new	12	23	17	15	21	14	17	5	22	9
CATATCAATGTGTAAA	ref_5951_new	8	12	3	8	4	8	15	10	10	7
ACAGTCCCTGGCTCTT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
GAGTACGCCTGCGGGA	ref_5951_new	0	0	0	0	0	0	0	0	0	0
AGAGTTGGTCTAGAAC	ref_5951_new	0	0	0	0	0	0	0	0	0	0
TATCTAACTATGGGTA	ref_5951_new	9	14	7	12	20	12	15	11	13	8
TGCCGGTAAGGGCAAT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
GGGCATATAGTATATG	ref_5951_new	121	185	149	117	202	105	207	114	187	110
GAAACCCCGGAGCCGT	ref_5951_new	6	19	17	15	11	12	17	15	21	18
GAAAGTTTCGACTTGA	ref_5951_new	34	40	32	30	43	24	46	34	47	19
GTTACATGAATAGCCG	ref_5951_new	0	0	0	0	0	0	0	0	0	0
AAGGTGTACATAGCAG	ref_5951_new	0	1	5	1	2	2	2	2	8	3
ATAGGATGTATCTAGC	ref_5951_new	27	74	43	30	84	37	83	34	99	20
AATAGTTTATTAATGT	ref_5951_new	46	90	79	53	84	56	80	70	90	54
AAGGTAGGCTGTGTGT	ref_5951_new	19	35	15	14	25	15	32	10	36	13
AATGGTGGGACGGCAG	ref_5951_new	17	25	14	12	22	11	11	12	30	12
CACGACTCAATCACGT	ref_5951_new	47	44	44	46	69	36	66	43	66	32
TGGAATTCTCAGCCGA	ref_5951_new	101	126	145	106	147	101	144	108	184	116
TTCTGAGTATTATGCC	ref_5951_new	34	46	26	22	40	16	40	30	55	24
TGTAAGGGGAATCTTA	ref_5951_new	0	0	0	0	0	0	0	0	0	0
CGAAAGCGTCATCTTT	ref_5951_new	19	10	7	5	15	11	17	9	13	8
CTCTGCCTGTTTGTTT	ref_5951_new	50	45	48	44	64	33	44	31	59	45
ACGCCACACTAAGGTG	ref_5951_new	37	93	49	34	93	34	86	34	88	24
CTTCATCAAGATTACC	ref_5951_new	3	7	11	6	2	4	8	2	7	8
CGGTGGTGGTTATATT	ref_5951_new	0	0	0	0	0	0	0	0	0	0
TATCCGAACGACCCGG	ref_5951_new	36	51	56	54	95	42	73	38	65	33
ATATGCAACCCTGTTT	ref_5951_new	17	31	37	26	46	24	36	31	52	17
TATATTTACGTTTTCG	ref_5951_new	11	15	13	5	21	8	16	4	15	8
ATCTTCTAGAAAGAAC	ref_5951_new	0	0	0	0	0	0	0	0	0	0
TCCTTTTCTTTGGTTT	ref_5951_new	22	43	13	14	32	15	48	19	51	17
GGAGTTCTACACTTAT	alt_964_fdr	235	136	283	222	148	205	160	213	169	200
TTGGCTGAAGCTGCTC	alt_964_fdr	67	25	58	58	32	56	43	45	52	45
ATCCGTTTCGCGCTAT	alt_964_fdr	22	22	33	24	24	24	22	31	17	32
GTAACCTTCTCCTCAC	alt_964_fdr	22	7	18	17	10	9	14	17	9	16
GCCCCCTCGCCTGTGT	alt_964_fdr	0	0	0	0	0	0	0	0	1	0
GGAACATATTAAGCAT	alt_964_fdr	89	44	142	86	49	88	54	80	62	82
TAGCCGGTAAGCACTA	alt_964_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTTTTTGCCTTGC	alt_964_fdr	2	0	3	4	1	6	0	2	1	1
TCTTTAAGTGTGTGAA	alt_964_fdr	141	111	146	130	97	139	103	134	98	104
ACCATGTTTCCTACAA	alt_964_fdr	31	29	39	31	20	32	27	44	29	31
AAGCCAGTATTGATGC	alt_964_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGATCTTAGACTC	alt_964_fdr	11	5	18	18	8	19	8	16	8	11
TAGTGCCCCCTTTAAG	alt_964_fdr	87	67	131	94	65	94	82	96	77	79
TAAATCCCTTCCGTTT	alt_964_fdr	76	45	91	90	61	64	48	51	42	78
CAACAAGGGCTCTGCT	alt_964_fdr	26	14	48	35	14	37	18	33	24	31
ACAGGCCTTATTTGCG	alt_964_fdr	19	35	14	17	38	17	29	19	37	11
GGTGTGTTATAGTCAT	alt_964_fdr	0	0	0	0	0	0	0	0	0	0
TCGATCTCCTTCCTAT	alt_964_fdr	249	137	286	272	134	244	140	282	162	241
TGTTGAGGAGCGCCTG	alt_964_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGTTTATCGGGTA	alt_964_fdr	0	0	0	0	0	0	0	0	0	0
CCAAGCCCCGATATTT	alt_964_fdr	0	2	0	1	4	4	1	6	6	2
TATAGCACTAAAGATG	alt_964_fdr	0	0	0	0	0	0	0	0	0	0
GTACATCATCGCAACG	alt_964_fdr	25	16	26	35	19	22	13	32	21	24
TGCCGGTTAGATAGTG	alt_964_fdr	40	23	24	23	32	38	31	21	13	24
TGCCAGAGGCAAGAAA	alt_964_fdr	125	75	154	132	77	99	69	118	79	98
CCATGCTAGTGGACGA	alt_964_fdr	40	32	57	53	35	52	48	43	38	44
TCACTTGTTTCCTATC	alt_964_fdr	93	67	101	85	68	110	73	77	61	78
TGCTATGTAAACATCC	alt_964_fdr	43	35	72	60	29	59	31	40	39	67
TCATGTCCGACGCATC	ref_6005_new	0	0	0	0	0	0	0	0	0	0
CGTGGTGTAATGCCCC	ref_6005_new	1	4	9	4	2	3	0	0	7	1
TTTCTTCACGACTTCT	ref_6005_new	14	15	17	18	12	10	19	10	22	13
TTTGGTATTGCGCTCG	ref_6005_new	6	0	1	1	0	0	0	1	1	0
GTGCCATATTTAAGTA	ref_6005_new	69	83	82	81	68	58	87	68	86	53
GTCATCTTGGTGTCAA	ref_6005_new	33	23	41	33	31	30	36	40	48	36
TTTTGTAGTATATAGC	ref_6005_new	31	56	35	31	40	39	38	36	46	31
CGACTGTTCGTTTTTT	ref_6005_new	0	0	0	0	0	0	0	0	0	0
AGGCCGACTAGCAAGT	ref_6005_new	9	7	6	13	13	10	16	3	11	6
TGCTATTCCTGTAGAA	ref_6005_new	80	76	88	63	76	73	84	73	103	62
TATCTTGACTCGGTAC	ref_6005_new	0	0	0	0	0	0	0	0	0	0
TACAGATTAGTGTTTT	ref_6005_new	7	21	12	17	9	16	7	6	20	7
CTGTTACCCCTGCGTG	ref_6005_new	0	0	0	0	0	0	0	0	0	0
TGCACTGTGGGTTTTT	ref_6005_new	0	0	0	0	0	0	0	0	0	0
GACCGTTGGGTTGACA	ref_6005_new	1	0	0	0	0	0	0	0	0	0
TACAGGATACCTACGA	ref_6005_new	0	0	0	0	0	0	0	0	0	0
AATTAGCAGGTCTTGG	ref_6005_new	9	14	8	7	11	8	6	4	8	10
ATTTTACTATAATGTA	alt_6005_new	78	120	102	83	126	82	114	83	139	99
CTGTAGTCCCACAAGT	alt_6005_new	29	52	39	38	46	49	50	33	44	30
TAGCCTCCCTGAATTT	ref_6005_new	65	84	83	66	90	58	110	74	116	66
TGACCCATTTTTGTTA	ref_6005_new	11	11	13	10	11	27	16	7	18	9
ACTCACTGTTCGCCGC	ref_6005_new	29	23	40	35	41	25	31	22	42	26
AAGTTGCGCTATGTTT	ref_6005_new	17	15	11	9	13	13	12	7	15	12
TTTATACACTTCGCAA	ref_6005_new	26	19	35	23	18	21	31	23	27	29
CGAATTGATCTGCTAT	ref_6005_new	54	76	84	65	61	63	105	61	96	61
GCTTTTCCCAGATAAG	ref_6005_new	35	41	51	39	52	35	38	35	49	39
ACAGTAGAGTTAACGC	ref_6005_new	51	56	74	54	60	51	67	55	86	65
AGGATGAACCTTGGAC	ref_6005_new	51	72	56	43	55	38	48	49	55	39
GCCTGCTTTGTTTTTG	alt_5787_new	8	26	19	14	23	16	23	13	35	14
GTGGACGAATGTTGCT	alt_5787_new	166	214	200	161	237	155	219	132	240	155
GGTAAGTTTTCAAACT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
ATAAGGTCGCACCGAT	alt_5787_new	23	23	18	24	31	14	39	21	36	16
TTTATTAATCGTGAGT	alt_5787_new	4	6	2	3	7	8	6	4	5	1
TAGTGCGAATCTCGCT	alt_5787_new	93	115	113	90	137	71	134	77	139	82
TACCTGAACGAGCAGA	alt_5787_new	12	26	24	20	28	15	38	19	41	7
AATAAAGCGCGGTCCA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
ACTACTAGCAGAACTC	alt_5787_new	90	106	80	76	128	86	107	58	128	85
CTAATCTGGACTGGGC	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GACGGATGTATGTACG	alt_5787_new	17	19	16	28	27	11	31	19	28	17
CGGCCAAACAAGGCCA	alt_5787_new	24	53	30	18	69	23	63	17	63	18
GGTTGACACCGAATAC	alt_5787_new	3	0	4	4	3	3	1	7	3	2
AGATCTTTAGGTGAAC	alt_5787_new	8	13	17	7	6	11	16	2	9	14
TGGGATATTTGCTTAA	alt_5787_new	15	42	23	20	13	20	24	17	29	25
GGAGACGCATTCGTCA	alt_5787_new	64	73	70	49	71	46	71	61	64	51
GATCGTTGACCGTATG	alt_5787_new	13	23	19	6	25	19	28	9	24	18
CTTCGGCAGTAAGCTG	alt_5787_new	11	16	13	7	15	4	9	7	8	10
CGTAAGATAGCCAGAT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TGCAATCTCTGGGCCG	alt_5787_new	64	60	94	66	55	49	80	56	77	52
TTGGGCCTGTTGATTT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TCAGCAGAAAACCGGC	alt_5787_new	42	42	52	30	45	35	55	32	50	47
AGTACGTCTCGATTCA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GGGTGCTAGCCCGATG	alt_5787_new	14	9	17	6	13	13	17	13	14	6
TTCGACGAATTTTCTG	alt_5787_new	28	34	29	25	32	27	26	23	25	16
GCTCACAGTCCGGGCC	alt_5787_new	12	8	11	10	16	9	10	15	20	5
ACATTTAGCGATTATA	alt_5787_new	126	189	136	100	177	130	157	113	182	117
CAGGCAGCCCCCATAT	alt_5787_new	4	4	2	1	1	3	1	3	2	2
AGGTGCCGTATCTAAC	alt_5787_new	16	21	18	16	31	18	32	19	23	13
GCTTATGGTCCCCTAT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GCACTCTTTCTCGCTT	alt_5787_new	140	175	138	123	186	108	155	131	177	135
AAGGACGCAGCAGGGC	alt_5787_new	15	12	28	15	13	13	14	13	28	11
TTCTCGTTAGGTATTT	alt_5787_new	49	53	47	32	53	42	48	36	71	46
CTAGCTACCCAAGAGC	alt_5787_new	16	18	22	21	24	21	31	9	26	15
TAGGTTCTCTTGGATA	alt_5787_new	29	34	40	41	36	24	36	14	41	14
CTAATTTGCATAGTTA	alt_5787_new	10	20	10	11	22	11	20	8	15	16
TGGCAGAGTAAAGTAA	alt_5787_new	3	3	2	2	9	0	5	0	8	1
CTTTTAATCTACTATC	alt_5787_new	72	104	87	62	98	57	98	60	99	55
GTTATAAAAGAGAGAC	alt_5787_new	8	8	8	6	4	5	10	3	12	10
AGGCTTTTATCTCTAA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GAAGATCTAGAACTTT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GCATGGTCTATCTGTG	alt_5787_new	2	11	7	5	11	6	13	5	21	6
GGTCGACCCAATGTAC	alt_5787_new	28	25	30	28	41	11	28	17	33	11
GTCATCTCGCTGCCAA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GGTTTCGCCCTGATAC	alt_5787_new	2	1	4	3	6	7	7	5	3	4
TGACAGTACGTGCGGG	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TTACAAGACCGAGCGA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TTGACAGGCTGATAAC	alt_5787_new	21	19	14	21	22	17	26	13	27	11
GTTGATATTTCTAGGG	alt_5787_new	23	23	19	20	25	12	28	21	26	21
GTTGCGAAGACAAAGG	alt_5787_new	74	115	88	71	142	74	130	61	135	63
AGGGCTCACTACATGC	alt_5787_new	15	29	28	22	36	22	36	15	35	18
GCCACACTCTCACCGT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TATTATCTGGCTTCTT	alt_5787_new	16	15	25	22	42	19	23	19	25	14
GGGCACGCATCGTAAC	alt_5787_new	25	27	18	28	22	16	26	15	31	19
TCCTCGTGGTTAATGC	alt_5787_new	29	35	32	30	50	33	44	21	43	22
TAATGTTAGTTTCTGC	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TCGTATGCTACATCTA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
CCTGGCCTAGTAGGGT	alt_5787_new	3	18	4	2	8	2	11	4	8	0
ATGCGCCCTCACTACT	alt_5787_new	34	39	28	25	39	34	41	45	46	23
CACACGCCGGTGCTGG	alt_5787_new	23	44	40	35	53	30	33	38	61	37
TGAACGGAATGTAGCT	alt_5787_new	41	63	37	39	49	29	40	39	61	30
GACTTTTCAAAGTTTA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GGGCCCCTTCAATTTG	alt_5787_new	0	0	0	0	0	0	0	0	0	0
ATTCGGCGTCGCTCAC	alt_5787_new	9	15	23	14	15	7	16	11	14	11
AGGGACTTATACCTAC	alt_5787_new	0	0	0	0	0	0	0	0	0	0
AACCATGGATTTGGGT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
CTTAAAGCTTCAGGTT	alt_5787_new	0	1	0	0	0	0	0	0	0	0
GCCCATACAAGGGATT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GCCATACGGTTAATGG	alt_5787_new	28	87	24	19	82	27	75	21	96	22
TCTCCAGCAAAGTTAC	alt_5787_new	25	62	28	34	61	36	68	21	52	39
AAGTTACCCCGAGGGG	alt_5787_new	12	19	20	15	13	14	30	13	15	8
TGCTGACTACTGTAAC	alt_5787_new	16	16	21	14	32	17	25	23	26	16
CCGTACGTGATGGTTA	alt_5787_new	24	40	30	22	49	26	33	26	37	24
TTCGTTATAAGCTAAC	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TAATTGCCGCCATCTA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
CTGCTAAGTTCTCAGC	alt_5787_new	1	9	2	6	5	3	3	4	10	2
CTGCTGGCTAACGTAC	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TTACAGGTTGTGTCGC	alt_5787_new	4	6	0	2	3	1	0	5	2	5
GATCTAATTGAGAGTT	alt_5787_new	24	30	30	33	15	15	21	22	46	18
ACTGGCTGCCATTTTA	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GAGCCGTTGGTGAGCT	alt_5787_new	12	25	14	11	20	9	18	14	30	7
CGGCGCGCCTTGCACG	alt_5787_new	8	20	17	3	11	6	7	6	15	7
GCCACGCTCTCGGATT	alt_5787_new	48	75	78	49	60	57	80	46	81	50
TTGTCATTTAATTTTG	alt_5787_new	26	30	16	20	27	11	21	13	34	14
TTCAGGCCTACCGCTA	alt_5787_new	29	37	34	37	46	24	41	28	60	27
CTGCATACGACCGGGT	alt_5787_new	12	28	18	19	37	13	31	14	27	16
GGACCCTCTAGTTAGG	alt_5787_new	2	2	0	4	6	5	3	8	1	1
TTCGGTTCCAGGTTAT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
TTGCTAAGCTAACGCG	alt_5787_new	49	77	76	41	82	54	78	49	78	50
GCGGCGGTTTGAGTGT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
CGACAAGAATCTTTAT	alt_5787_new	2	2	2	1	6	1	2	1	3	0
CATCTTGTCGCATACT	alt_5787_new	42	61	71	36	68	31	76	41	56	43
GTTTGTACCTTACAGT	alt_5787_new	1	6	0	3	4	0	4	0	3	0
AACGATTATATGCATG	alt_5787_new	14	7	8	11	12	8	14	6	10	3
GAGATCCTGAAGGTTC	alt_5787_new	5	3	11	0	9	4	10	3	5	1
AAGGGCAGTCTGACTC	alt_5787_new	63	58	60	57	56	54	68	51	92	32
AGAGATACTGTTATCC	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GGTGGCCGATGGTAAT	alt_5787_new	27	26	18	24	32	20	32	23	27	20
CCGAGAGTCCTTTTGG	alt_5787_new	3	2	2	4	4	0	5	1	4	0
ATAAGAATCGTTAAAT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
GAGGCGGTAATAAAGT	alt_5787_new	14	10	15	12	15	23	15	15	14	13
TCCTACCGTCCGTAAT	alt_5787_new	50	74	50	67	74	48	81	55	92	48
CAGCAGGGTTTATCCT	alt_5787_new	2	2	7	4	11	3	10	4	9	7
CCACAGTAATCCGCCT	alt_5787_new	9	10	14	5	21	10	10	10	20	9
GAAGAGAGTGCCCGCT	alt_5787_new	0	0	0	0	0	0	0	0	0	0
CTACGAACGCCGCGTA	ref_5055_fdr	11	7	8	8	5	3	6	9	9	3
GCCTAGTAACCGTCCA	ref_5055_fdr	76	90	83	61	54	65	68	49	64	82
ACGTCTGGGGAACCTG	ref_5055_fdr	90	70	94	70	79	77	68	61	80	63
AAATTGTCCACCAGAA	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
TATTTCTTATACCCCG	ref_5055_fdr	454	372	533	423	385	440	392	400	393	424
TCCTGCGTACCATCTT	ref_5055_fdr	38	25	42	36	44	36	36	32	52	41
GCCATCCGTGACACAC	ref_5055_fdr	31	18	29	19	15	18	13	15	18	15
CTTCATTAAAATTAGA	ref_5055_fdr	48	57	60	34	51	50	40	40	57	42
TAGTTTCCGATATTGC	ref_5055_fdr	44	44	49	30	21	27	33	29	23	30
GAGTGGGTTGTTGAGC	ref_5055_fdr	67	62	79	64	50	59	44	50	60	52
GCATTTGGCACCGCAG	ref_5055_fdr	55	42	59	58	46	48	36	40	54	41
TCCGATAAACGACCAG	alt_5055_fdr	34	25	22	22	15	16	20	15	26	26
TGTAATCATAATAAAG	ref_5055_fdr	3	3	9	3	4	3	5	7	4	7
ACTGCGATTAGAATGC	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCGTCGCATGTCA	ref_5055_fdr	216	181	310	210	162	238	196	179	220	212
TTCAATTACGGTCGGA	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTTGACTAGGTGG	ref_5055_fdr	10	6	11	7	13	9	7	13	15	4
GAGAGCTCTTTTGTTC	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
CGACATTGTGCCTACT	ref_5055_fdr	76	61	95	50	68	53	64	63	74	71
GTGTTCACGAGCCGAA	alt_5055_fdr	231	181	275	209	179	212	200	218	214	201
ATACTCGTGCATTTAA	ref_5055_fdr	49	32	55	45	60	39	42	32	49	40
GCGCTGTCAAATACTT	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
ACATTCTAGAGTCGTT	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCATGTTCATAGG	ref_5055_fdr	9	11	26	19	11	17	20	14	13	15
TCATGGGGGCCTTTAT	ref_5055_fdr	37	44	77	54	50	48	46	45	57	61
ACCTAATTATCACTTA	ref_5055_fdr	24	23	35	30	23	25	39	25	16	25
ACTATCTAGAACAGTT	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTGCCCGTCACG	ref_5055_fdr	8	12	7	7	7	10	4	4	7	5
AGGGGGCATATGATAA	ref_5055_fdr	156	105	188	156	118	124	122	160	167	132
TGTTAACGAAGTCGAT	ref_5055_fdr	94	76	106	70	51	88	78	65	78	64
TTCGTACCCGGTATCT	alt_5055_fdr	17	17	13	26	5	14	4	6	14	8
TATCCAGGTGTGGATT	ref_5055_fdr	319	266	360	269	255	302	264	246	278	259
GGAGAGGTGCGACCCC	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCATGTTCGTCTT	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTGGATCTGTATT	ref_5055_fdr	26	24	26	21	18	27	25	17	23	14
ACGCTCTTGTTTAGTA	ref_5055_fdr	39	42	61	60	42	52	56	41	64	60
AATCTACTGGGTAGAC	ref_5055_fdr	47	56	55	38	43	50	39	49	51	47
ATTCCGTGTAGTACTT	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
TTCGACACGCCATCCC	ref_5055_fdr	134	89	164	129	105	131	103	131	114	108
CATCGGGCGTTGCCTC	ref_5055_fdr	13	3	7	8	11	4	10	8	8	8
CCAACTTTGTTACGTG	ref_5055_fdr	111	134	175	113	118	147	161	129	129	114
ACCTTTTAGGCCCGTG	ref_5055_fdr	67	40	88	69	58	67	64	71	55	52
CCTATTGAGTGAGTCA	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
CTATGCCGCTTATTTC	ref_5055_fdr	33	50	49	33	67	36	63	33	96	45
GTTATACGTAGCTTCC	ref_5055_fdr	9	19	15	14	13	15	12	5	13	14
TGAGGTAGGGCGTGTG	ref_5055_fdr	4	10	12	2	10	5	4	7	3	6
TGAGACTTCTGGGGCG	ref_5055_fdr	46	27	45	35	32	43	29	32	30	31
GCGAGATACCAGTCTT	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
ATAGCATAAACCGCAC	ref_5055_fdr	34	36	48	27	33	36	37	29	16	28
CTTTCCAATGCCAGGC	ref_5055_fdr	14	8	22	16	12	20	22	14	11	17
CGGAGACCAACAGGTA	ref_5055_fdr	0	0	0	0	0	0	0	0	0	0
TCCGAGAGGATAAGAT	ref_5055_fdr	66	40	75	50	40	42	42	55	43	54
TAGAGCCCTACATAAC	ref_5055_fdr	92	75	106	96	101	107	88	91	71	75
AGGACGTGTGTATAAT	ref_5055_fdr	30	44	33	33	41	21	49	32	36	20
ATAGGGCCGTTATGCA	ref_5055_fdr	71	62	96	79	61	64	93	66	90	67
CAGCCAGAACTGGCTT	ref_5055_fdr	0	2	0	0	1	0	1	0	0	0
CGCTCGCCCAATCTCG	ref_5055_fdr	96	95	93	85	80	89	93	77	90	68
GAAGATCTTTCGCGGC	ref_5055_fdr	11	9	11	13	2	10	6	8	11	14
GTGAAACGATTATTGC	ref_5055_fdr	128	106	165	116	98	143	112	132	119	137
ATAAGTGCCCGGACAT	ref_5055_fdr	4	10	24	12	10	3	10	9	5	6
TTGTACATTCTTGTCA	ref_5055_fdr	20	10	33	25	21	30	20	15	20	28
AACAGATTGCTGGACC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
TTAAGGGTGTCCTGGA	ref_3482_missing	49	46	65	48	38	33	51	51	40	44
TCGTGTCTTTCTAGAC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
AGGACCCTTGCAGTAT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
AGAGTTGGCTTAGCCC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
ACCTGTACCCTATCAG	ref_3482_missing	63	76	90	68	70	55	77	65	84	59
ATTGTCTACTTGCACA	ref_3482_missing	12	9	5	14	15	10	4	11	8	9
GACTTTTTTCATCGGG	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
AATTACTGCAGGTTGT	ref_3482_missing	27	23	41	28	26	44	19	27	23	22
CATGAATGCTAATTGC	ref_3482_missing	1	0	3	0	3	0	3	2	0	3
CTGTATTGTGGGTACA	ref_3482_missing	47	41	63	40	55	33	51	39	61	35
TCAAAAAATCTTCTAA	ref_3482_missing	59	53	59	71	69	61	60	59	44	59
CTTAGAGTGCTGTTTT	ref_3482_missing	2	1	4	1	0	3	1	4	0	0
TATTCTGAATACCGCC	ref_3482_missing	24	12	27	15	19	13	14	13	13	13
CCATCACAAGGTTGGG	ref_3482_missing	69	59	73	63	65	59	66	80	56	84
CGCAGAACGGAAGGCG	ref_3482_missing	12	9	13	11	12	15	8	8	9	10
CTTTAGCCGCTTTTCC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
GCTTACACCTTCTGCC	ref_3482_missing	31	20	51	27	39	31	32	33	35	34
TCCTCCGTTGATGTTC	ref_3482_missing	75	65	88	64	57	66	79	66	64	55
CCCCCTATCAGCTTGC	ref_3482_missing	42	65	47	50	77	45	60	51	74	38
TCTTCTCATAGCGCGC	ref_3482_missing	30	36	53	54	34	50	23	37	35	38
CCACTCACCTTCAACA	ref_3482_missing	12	22	24	17	23	20	27	18	31	12
CGAGCAACGATTGCTG	ref_3482_missing	36	28	33	27	21	38	35	23	33	21
ATCCGGTACCGATGTA	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
CTGATCCCATCACTTT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
CGTTCCAGCCCCGTCT	ref_3482_missing	34	28	35	45	36	39	40	38	35	39
TCTGGATTTCGGTTAA	ref_3482_missing	1	0	1	2	1	1	1	1	0	0
AACGTGACTGGGTTTG	ref_3482_missing	4	1	7	3	4	4	2	4	7	9
GTTCCGCATGTATTTT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
CGTCGGATAAATAAAA	ref_3482_missing	26	13	20	24	14	22	25	33	15	16
AGGCTGTCCCCTAATT	ref_3482_missing	39	61	57	50	58	50	50	47	47	44
ATCGCGCCAGGCTCAG	ref_3482_missing	24	23	33	38	22	32	35	26	39	25
ATAGTCGAAGTCGGGT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
TGCAAGCCAAGCCGGG	ref_3482_missing	8	13	12	12	8	3	4	6	5	12
AGAGTTGGCTTAGACC	ref_3482_missing	85	70	98	81	89	78	74	79	68	58
ATTATCCACGCTGATT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
CATGCCGTTGGGTCCC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
GACTTGCGTTCAAGTT	ref_3482_missing	7	10	10	10	8	9	4	10	12	14
ATCAAATGTCTTCTTC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
TCAAGTCTCGTTTGCA	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
ACGGGGACGATGCCCC	ref_3482_missing	70	67	69	72	68	48	73	80	46	57
TCGAAGCTAGACAGAA	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGGTGTCATTTG	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
GCCTATGTCATTGCGG	ref_3482_missing	26	18	24	20	16	18	20	20	15	12
GTGTCTTTTTCGAGAT	ref_3482_missing	9	7	11	3	5	4	5	6	7	7
TATATACTTTGTATGA	ref_3482_missing	11	21	20	16	9	16	21	10	12	22
CGCATTCGAATGCCAT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
TGCGCCATCTCGGGAC	ref_3482_missing	361	359	464	388	357	390	314	356	372	344
GCCTAATTGTTAGTGT	ref_3482_missing	174	163	184	187	144	132	176	159	172	118
TACACACGCGCGCATT	ref_3482_missing	2	2	4	4	10	5	3	4	3	1
GCTCATGGCGGCCTGT	ref_3482_missing	35	24	37	25	17	27	7	22	17	30
CTAGACCGCAAGCTTC	ref_3482_missing	97	103	130	107	93	130	104	110	70	94
ACAGTCCTCGGCAGTC	ref_3482_missing	17	26	17	28	14	18	17	14	23	22
GCCCCCCGCTTTCAGT	ref_3482_missing	2	18	3	8	8	2	8	5	17	8
TCTAATTGGATGCGCT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
CAACGTTGCTCTTAGA	ref_3482_missing	6	5	10	7	2	6	1	2	5	8
CATCGTACATTAAAGC	ref_3482_missing	23	15	21	14	20	16	20	19	24	14
CTCCCTATCTACGTGC	ref_3482_missing	15	76	14	12	69	16	98	8	79	13
TAGCACCTAACGAGCT	ref_3482_missing	26	15	32	27	27	32	21	19	29	21
AACCTGATTCAGTTTA	ref_3482_missing	57	51	83	51	42	48	47	48	57	44
GATGCATTATGGGCGC	ref_3482_missing	6	11	12	14	11	10	9	14	8	9
AACTGAGAGTCAACCA	ref_3482_missing	4	2	13	4	4	2	6	1	4	2
AAGCGCCCTGTCATTT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
AGTTCCAAATATGACG	ref_3482_missing	30	24	36	23	9	11	20	20	18	16
ACCCGTCTTTCTGGGA	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
TTCCTCGGACTCCTAG	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
TGAGAACACCCAACAC	ref_3482_missing	142	147	189	183	160	159	161	174	136	138
TGCCTCAATTACCTCA	ref_3482_missing	130	101	172	131	129	104	146	115	126	123
CTGCTCACGTCTGTTT	ref_3482_missing	3	6	3	6	5	2	4	2	9	5
AGGTTACTCCGGTATT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
ACAGGGACTTTCAGTT	ref_3482_missing	22	18	14	16	37	12	17	19	18	20
AGATTTATGTCTGTCT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
TCCTTATAGGCTGCAC	ref_3482_missing	30	21	34	25	14	28	22	20	16	23
TCGCCCTAGCGCCTAC	ref_3482_missing	37	29	24	30	29	29	16	23	17	28
ATTTACAGGCCTCATG	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
CCTTCGCATGCCTATC	ref_3482_missing	17	58	35	35	62	34	59	30	63	34
GGGCACCTGATCAATT	ref_3482_missing	125	101	154	145	110	118	121	133	132	105
GAGACCACACTCGCGG	ref_3482_missing	3	0	3	2	0	2	1	0	3	2
AATACATCCAGGTATT	ref_3482_missing	8	8	5	6	4	5	0	2	4	3
CCCCTCGTGCTAGTGG	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
ATGCCAGGCACTCGAT	ref_3482_missing	58	39	54	39	40	29	36	47	47	42
GTGGGTCCTATCAACT	ref_3482_missing	48	50	54	49	38	31	48	27	57	42
TCTTACAGCCCAGAGT	ref_3482_missing	4	15	10	6	2	5	6	4	5	7
AGTACGAGAGGAATCT	ref_3482_missing	347	240	427	358	231	310	244	327	255	285
CACATTCTTTGACTGT	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
GCATACTTATTTAGTA	ref_3482_missing	47	42	44	51	42	46	36	37	42	44
AACGGACGTGGCTTAG	ref_3482_missing	15	7	10	18	13	13	15	14	13	15
GAGAGTCGTCTGTCTG	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
ATAGGTGATCGCATAC	ref_3482_missing	85	68	88	68	55	78	53	69	65	55
GAGGACCAATATTGTC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
AACTGGCGGTGTCCGA	ref_3482_missing	25	13	16	7	5	13	16	10	11	11
CGCCAACCCCTATTGA	ref_3482_missing	34	89	61	31	119	49	93	43	111	30
GCTCCCTGGATGCTTT	ref_3482_missing	8	6	9	20	9	21	19	7	18	10
GGAGTCTACGCATCTG	ref_3482_missing	26	23	28	21	20	25	18	21	16	26
GCTTCCAAGGGCTTTC	ref_3482_missing	0	0	0	0	0	0	0	0	0	0
CGGACACTTCGGACAG	ref_3482_missing	11	2	9	11	3	7	5	7	8	9
GGCGAAATATTTCCAT	ref_3482_missing	87	53	90	81	73	55	67	66	70	70
GACCTTTATGGCTTGG	ref_3482_missing	91	96	162	109	111	124	105	124	120	98
TTATCGCCGGCCGCCC	ref_3482_missing	18	21	16	34	23	20	18	17	16	20
ACCTCTAGTAATTTGA	ref_6095_new	19	33	22	20	47	28	40	21	40	25
ACCGAAGGACGACCGG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TGTATCAGTACCAAGA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TTCCAGGAAACTTACT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TATATAACTGTTCGCG	ref_6095_new	3	18	5	8	7	6	13	3	14	6
GGATATTCCACGGAAC	ref_6095_new	3	7	2	4	10	7	4	5	11	7
TTGGGAGTGATTCATT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GGATCCCACAGTGGGT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GAACGTACTTAGTTAA	ref_6095_new	55	41	45	43	55	35	40	45	42	38
GCCTGGGCCTCTAATA	ref_6095_new	91	97	123	95	93	73	115	98	128	126
TGCTTGTTCCTTGATA	ref_6095_new	36	34	28	53	33	30	32	24	59	30
CCGCGTGTCCCTCTTT	ref_6095_new	12	76	16	24	85	20	72	14	99	13
GATTTTCAAAGTAGGG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GTGTCAGTTGCGGATT	ref_6095_new	3	33	28	12	16	5	17	9	18	18
ATGTCAAAGCCAGCTG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GACTCGTGTCTGATTT	ref_6095_new	14	12	20	14	32	11	17	15	13	10
GGACATGGAGGTTCTC	ref_6095_new	4	4	10	5	5	4	7	7	10	3
TCAGATGACCGTGTCT	ref_6095_new	15	7	9	14	13	7	17	10	16	9
TATAGATTTGGTCACT	ref_6095_new	15	18	17	9	12	13	17	5	16	7
TTATATTTTTGTTTAG	ref_6095_new	11	22	21	17	15	17	11	16	24	16
GCTTGTGATTTTGTAA	ref_6095_new	6	10	3	7	11	7	8	5	9	7
TTGGTGTCCGTATACT	ref_6095_new	16	25	20	17	18	10	15	12	22	17
TTTACCGCCCTAGGGT	ref_6095_new	131	158	155	141	189	141	173	123	174	123
CAAACGAACGTTCATC	ref_6095_new	24	34	38	38	26	27	27	35	33	20
CGTAACTTTCATTTTG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TTTTCCTCGATTGTGC	ref_6095_new	2	5	12	13	7	5	8	7	4	7
GTATCTCAAGAGAAGA	ref_6095_new	0	2	1	0	1	0	1	1	1	1
CGCTAGTACTTCGCAT	ref_6095_new	20	20	21	24	22	14	30	21	24	11
TCAGCATTTGCAGGAT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
CAACGTCTAGAACAGT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TCTTGGGGTTTTTGTT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
AAAGTGGTTGTCTCCT	ref_6095_new	25	26	45	31	42	28	38	19	44	16
CGGAATATTGTGTTGG	ref_6095_new	99	117	113	112	132	89	102	99	142	88
CGCCCGAACAAAGTTC	ref_6095_new	10	16	6	4	4	7	5	2	6	5
TCAATGTTGTCCTCGC	ref_6095_new	7	3	5	5	7	4	7	6	7	5
AAGGTCTATGCGAGAT	ref_6095_new	1	2	3	6	3	5	5	4	4	3
TACGTCCTCTTCATGA	ref_6095_new	48	64	43	53	66	46	67	36	67	51
TCTCGAGCGGTTGTTT	ref_6095_new	7	4	11	3	6	2	11	6	12	5
GCCGTACCTGTAGCTA	ref_6095_new	2	5	3	4	12	2	8	3	9	2
ATTTGGGTTTGGATTA	ref_6095_new	37	54	53	35	39	38	52	30	47	44
GAACGAGTTCATAAGG	ref_6095_new	8	11	13	12	13	15	9	7	20	11
GTTTTTTAAAATTTCC	ref_6095_new	8	11	8	8	7	3	4	8	7	5
GGCTACGCTTTTGAAA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
CTATATCCATGTTGCT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GCTGTAACTCATTTAG	ref_6095_new	18	21	6	9	10	17	17	15	12	4
TGACGGCCCTGCGATT	ref_6095_new	5	8	9	2	3	11	2	6	3	2
CTGCTTTATCCGTGGA	ref_6095_new	38	27	31	31	33	24	37	21	31	29
GCTGCTCATGCTCCAG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
ATTTGGTGGCTCCTTC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
ATATCCGTTGTTCTTT	ref_6095_new	31	13	25	24	24	19	14	20	17	22
TGATTGGGGCGACAAG	ref_6095_new	12	11	8	7	6	6	5	7	9	4
CCCTTTTGCCGGATCG	ref_6095_new	64	78	84	63	71	68	82	47	74	70
TCTCATCTTGCCATGA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TGATAAGCCATGACTG	ref_6095_new	5	12	10	8	13	11	7	6	14	7
GCGCCTTTGTTCGAAA	ref_6095_new	32	24	24	25	34	17	30	18	28	18
CATGGCCGGCTATTTC	ref_6095_new	3	2	2	1	1	1	2	2	5	1
CGCTCGACTGGTGCTT	ref_6095_new	7	41	7	6	46	2	43	6	50	7
AGGAATTACTTGGCAG	ref_6095_new	24	27	35	31	40	40	43	22	36	37
GGAGTCTAGTGGTCTT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TTGTCGTTGTAAGTTC	ref_6095_new	62	70	81	55	58	45	76	34	85	43
CCGGTTCTGGCTGTCA	ref_6095_new	6	9	15	5	5	3	9	11	13	4
GCTAACCAACTCTGCG	ref_6095_new	9	15	13	10	12	10	17	16	14	13
GGTATCCCCCACGCCA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
CTCCGTGATGGAGGCT	ref_6095_new	19	18	18	9	13	11	15	9	20	7
GCTATTTGGCTCGGCG	ref_6095_new	51	65	59	52	65	41	57	45	57	47
GCGCCCACGTTCTGTC	ref_6095_new	11	13	13	6	11	7	14	3	10	2
CAGATCAGCTGAGTTT	ref_6095_new	8	5	6	12	11	5	4	13	15	4
ATCTTTCCAATATTAG	ref_6095_new	12	22	18	11	28	16	26	27	32	22
TGTAAGTACGAAGTAT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
ATCTTGGCGGATATGC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GCTGTTTCTCACCGGA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
CTCGTATGGAGTATCT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GTCAATCCTTATGGGG	ref_6095_new	21	26	20	29	20	19	21	22	14	23
AACCCATCGTACGTAG	ref_6095_new	16	17	17	8	16	17	17	10	17	12
GGCATACCGTTTTATT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GTTGGGTTGTGCGGCT	ref_6095_new	20	40	30	19	28	22	41	32	34	19
TCGAGCCCGGAACTTG	ref_6095_new	64	67	60	51	58	52	57	46	66	54
ACTACTGGTGGGTAGT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GTCTCCTCCGAATCGT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
CGCTATGCCGTTTCTT	ref_6095_new	11	15	8	14	23	15	17	13	13	9
TCTGGTCCTTTGTTCC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TTCGCACAGTGTACAG	ref_6095_new	77	90	95	60	91	68	87	65	117	67
ATCCAGCATATCGATT	ref_6095_new	14	15	19	15	26	15	11	17	16	18
AGAATCCTAGGTCAAC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
AGTATCCCCCACGCCA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
CTAGGAGGTATTGGAC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TGAGGTTATACGCGAT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GGTGGTCCGAACTCGG	ref_6095_new	23	31	26	32	19	23	30	14	25	21
CCCTTGGTTTGCATAT	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TCCGCTTTTCGCCTTC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
ATTTATCTGTCCTCAG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GGGTATGCCAATGACG	ref_6095_new	63	60	75	67	78	49	90	66	72	48
TACGGGGCTGAACTTG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TACACCAACCTATAAA	ref_6095_new	15	30	20	27	35	14	35	23	34	17
TTGCTTTCCCTCTTAC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GTACAAGTTCGCGGTA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TCACGACCGACAGTTA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TTTCACGTCAACATAT	ref_6095_new	7	9	19	16	15	7	17	5	14	10
TTTCTCCCTGCTACAC	ref_6095_new	8	5	7	3	11	2	7	6	14	9
TAGTACCAATATCGGG	ref_6095_new	0	0	0	0	0	0	0	0	0	0
CATAAGGTAACTCATC	ref_6095_new	0	0	0	0	0	0	0	0	0	0
TCTTAGTTAGACATTG	ref_6095_new	14	16	13	17	6	12	13	10	19	13
TCAGGCGACGAGGTCG	ref_6095_new	39	48	49	28	45	33	39	38	55	38
TTGTTCTGTGATTTTC	ref_6095_new	37	29	40	48	32	42	45	44	46	42
GTGGTACGTAGTATAA	ref_6095_new	20	15	13	11	16	15	16	6	7	9
CATGGGCCAGTAAAGA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GCCTTTTTCCGCATGG	ref_6095_new	15	5	3	3	3	11	11	16	8	7
GTCCTTTTGAGGAAAC	ref_6095_new	11	19	29	19	28	22	21	16	15	14
TCCTTCTCCAGCTTTA	ref_6095_new	0	0	0	0	0	0	0	0	0	0
GGCTTGTGGGCCTGAC	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TACTTATGGCGGGCTG	alt_5740_new	5	4	5	1	8	12	3	7	4	6
CCGCACTAGACGCTTT	alt_5740_new	77	85	75	71	97	67	101	67	83	74
GTAACACTCTCACACC	alt_5740_new	8	31	16	14	44	10	36	19	39	10
TGGTCGGGCCTCTAAG	alt_5740_new	1	2	4	3	3	0	2	7	4	3
TGTTGACTTGGCGCGG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
AGCCACCTCACTACGC	alt_5740_new	3	19	10	6	17	7	12	14	13	9
GACTTGACCCGCTCCG	alt_5740_new	11	20	22	14	25	9	29	21	40	14
TCATTTATCAGGGCGG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TGTCTAGTGCACTTGC	alt_5740_new	0	0	0	1	4	0	1	0	1	0
TACTGCCAGTGTCCTG	alt_5740_new	28	27	19	30	31	23	27	25	35	21
TCAAGTAGGGCCTCGC	alt_5740_new	17	17	22	23	22	15	20	21	25	15
CAACAACCGGCCACCT	alt_5740_new	0	0	0	0	0	0	0	0	0	0
ACAGTATCTAGAACAG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CACCCGAATTTTGTAT	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TGTCTCATAACCACTC	alt_5740_new	85	83	99	75	115	54	84	71	92	55
ATCACCGTCGCCCATC	alt_5740_new	8	14	11	5	19	8	17	6	19	6
ACCGGCTACTTTTTAT	alt_5740_new	2	10	3	3	5	3	7	1	7	0
TGTGCAATCCAAGCTC	alt_5740_new	15	18	14	13	21	13	18	12	31	18
GGTGCTACGTTACCCG	alt_5740_new	21	27	20	27	37	14	36	18	34	21
GGCTTAACAAGACTGG	alt_5740_new	37	50	40	21	64	35	62	52	69	26
ACCCTTTTGCAGGTCG	alt_5740_new	46	105	69	46	97	51	58	38	88	57
TTCCGGGCATCTGTCA	alt_5740_new	4	5	6	6	2	3	6	4	4	4
CAGTCATCCATCAGCG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CTCCGGCCATAGAACT	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CCCGACACTATAACCT	alt_5740_new	7	19	1	5	17	6	18	7	20	4
CGTACGAGGTAAGGCT	alt_5740_new	22	37	20	19	22	25	16	15	24	13
TATTCTTTTGACCAGC	alt_5740_new	17	30	22	16	23	35	24	18	28	15
CTTGTCAATTCACTTC	alt_5740_new	2	8	0	3	5	2	16	1	5	1
CCCGTAACTTGATAAT	alt_5740_new	1	3	3	2	4	0	3	0	0	0
GACTATCAGGCCCGCC	alt_5740_new	17	20	21	8	23	22	20	7	20	16
CCCGCCCAATCTTGCT	alt_5740_new	20	16	18	16	21	24	23	11	10	15
ATGGCTGTCATTTAGC	alt_5740_new	69	85	79	70	91	51	125	67	112	69
ATTCACAAGGTAATAT	alt_5740_new	16	13	24	6	15	12	29	12	26	18
ACCGGCAATCTAATCG	alt_5740_new	15	26	8	4	19	4	25	6	30	11
TACGGCGAAAACCCCT	alt_5740_new	10	12	11	12	22	10	20	15	24	9
GTGAAGCGTCGTTTCT	alt_5740_new	39	44	29	23	43	23	31	18	46	24
CAGGCGCCTGGTTCAG	alt_5740_new	5	8	8	9	13	2	11	6	11	2
GGGCCTTCCTTAGGAA	alt_5740_new	22	27	22	27	40	18	39	21	41	24
TTTGTCTTCGCCGTGG	alt_5740_new	6	18	8	10	19	7	11	15	13	7
TCTTTCTTCGATCGTC	alt_5740_new	55	84	101	76	69	76	95	75	113	61
TTGATGCAGCATTGCA	alt_5740_new	4	9	9	5	12	4	21	9	9	6
CCTTCTTTATGGACTG	alt_5740_new	58	94	71	62	91	65	80	71	120	47
CCTCTGGTAATGCGAC	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TAGTGGGATCCGTTTC	alt_5740_new	14	19	14	4	9	14	16	9	4	13
TATTCGCGTCCTTTCC	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TAGGTCCATCTTCGCT	alt_5740_new	74	135	92	80	127	83	140	83	134	72
AATTTCAGTGTAAGGG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CTCAGGTGGTTTTAAG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CATAGATTGTATCTAG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
ACGCTTCTCGCTTTAC	alt_5740_new	22	37	27	26	43	19	39	24	43	12
CGGTGAATAGGCTGAT	alt_5740_new	8	14	13	8	8	9	7	6	15	7
TGTCCCGAATCGGCCT	alt_5740_new	15	19	8	14	20	9	12	11	14	6
GGTCAGTTAGCTATCG	alt_5740_new	35	26	30	29	25	17	32	18	41	7
CGCCGCTGAGTATAGG	alt_5740_new	118	173	173	155	184	145	171	129	184	99
CTTTTATAGGTCCACT	alt_5740_new	11	17	8	16	13	5	17	11	15	10
GTTCTCACCCTCTTGA	alt_5740_new	139	209	160	145	216	144	240	129	249	135
TATGTACTGGTGGCTG	alt_5740_new	5	6	7	6	8	6	8	9	3	6
TTCGGATACTACTCTC	alt_5740_new	28	62	32	31	65	22	64	41	68	13
GGTTTGGGGAAATATC	alt_5740_new	16	25	15	25	26	19	38	12	18	14
TTCCATGTCCGGATTT	alt_5740_new	96	123	103	95	148	92	131	75	141	110
TCGGATAAAAGGGGAG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CTCTTCCTCAAAGCTC	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TTCGCTATTTAGGCTC	alt_5740_new	7	11	9	4	6	3	14	10	15	1
TATTATCACTTCGCTA	alt_5740_new	0	0	0	0	0	0	0	0	0	0
AATCGCAGCACTCTAT	alt_5740_new	0	0	0	0	0	0	0	0	0	0
ATCCCGTATCGTGTCC	alt_5740_new	9	28	15	14	38	17	49	14	34	26
GACCCTGTATGGCGAT	alt_5740_new	44	44	43	33	28	26	63	31	48	41
ATCCATGTCCGGATTT	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TGTCTTCCCAGCTGCG	alt_5740_new	13	19	23	24	26	22	32	11	27	22
CTCGGCCAGAGATCGC	alt_5740_new	14	31	20	15	28	10	42	14	21	16
CCCCGTTCCCCAGTCC	alt_5740_new	8	23	14	6	17	17	22	9	20	12
TGCCCAGTTACTTATT	alt_5740_new	9	14	8	11	10	13	9	2	12	2
GACGTGGGCGATTACT	alt_5740_new	13	30	35	26	26	18	28	21	27	19
CTTCGTTAATGCATTA	alt_5740_new	90	104	99	92	132	75	132	71	116	77
GCGAATTCCGTCAATT	alt_5740_new	22	23	26	21	24	19	42	16	25	22
TCTTACTTCGTAGAGT	alt_5740_new	13	34	13	11	38	9	29	14	29	18
TTTTGTGGTGGATCGG	alt_5740_new	2	2	0	1	3	2	1	2	4	0
AGAGTATGCTCAGCCT	alt_5740_new	2	7	5	1	6	1	6	2	1	2
TATTTTTCGTCTAGGG	alt_5740_new	58	80	72	64	73	58	78	54	83	48
TGGATTGTGTGCATGA	alt_5740_new	24	33	24	30	47	31	42	20	45	22
ACCCATCGCCCATTGC	alt_5740_new	6	8	15	15	18	6	7	8	13	7
TGGCTTAAGCCGTAAG	alt_5740_new	2	0	0	2	0	2	3	2	3	2
TGACAGGCCTACCACC	alt_5740_new	3	7	1	5	3	3	4	3	3	3
GAGTCTGTATCCCGCC	alt_5740_new	3	4	4	6	5	5	7	2	11	3
GGGGCGCTCATGTCTA	alt_5740_new	0	0	0	0	0	0	0	0	0	0
GTGTCTGCCTGGATCG	alt_5740_new	29	44	27	29	29	26	32	26	37	19
TAATTAATGGGATAAC	alt_5740_new	62	54	41	39	64	47	81	32	59	33
TTCCGGGCAATGATCC	alt_5740_new	3	4	7	5	8	6	12	3	11	6
TAAGAGGGTCTTGAGT	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CATATGTCGGCCACGG	alt_5740_new	6	10	10	9	7	7	8	16	11	8
CGGTGTTCCCAGGTTA	alt_5740_new	5	9	12	5	8	7	8	6	4	9
GCGCCGGGTTATGCGC	alt_5740_new	6	12	11	10	14	2	18	4	13	5
TCGTAGCAACGTGTAA	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TATTAACTAGGTGTCA	alt_5740_new	20	12	14	10	24	12	13	10	16	10
TCTACAATGAGCTTGA	alt_5740_new	14	26	24	23	32	12	18	21	40	17
ATCACCGCTCTAGGGT	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TTTTGTCGCTCGGCAT	alt_5740_new	21	19	19	21	13	19	11	20	23	13
CATCACGCATCGATTT	alt_5740_new	1	4	0	0	5	5	5	2	2	1
CTAGGGTCAGTTGAGG	alt_5740_new	6	12	4	6	9	3	15	5	10	3
GTCTTCCTGTTACGTG	alt_5740_new	2	6	3	2	0	1	1	0	1	1
GAATGTACGTAGCCTA	alt_5740_new	26	58	34	25	37	33	42	36	54	28
GGGTCGATGCGGACTC	alt_5740_new	39	71	37	54	58	48	59	43	68	43
CATGAGCCGTTGGAAG	alt_5740_new	21	25	16	29	18	16	29	21	32	10
GTGATAGAAACTCGCG	alt_5740_new	74	106	73	80	102	73	118	79	131	71
GACCCTGGTTGTGTAC	alt_5740_new	5	11	5	3	16	6	9	3	16	12
GATTCAGCCCAGTTAA	alt_5740_new	0	0	0	0	0	0	0	0	0	0
GTTCTCACACTCTTGA	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CTCATGTGCGGAACCG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
GGATTAAGGTCCTCTG	alt_5740_new	15	33	22	26	26	10	24	11	45	15
TCCCTAAGGGTACATT	alt_5740_new	31	41	25	25	41	23	52	30	49	27
TTGATATGACGGAAAC	alt_5740_new	13	19	13	10	12	8	8	7	21	3
ATGAATTTAAGAGCAA	alt_5740_new	0	0	0	0	0	0	0	0	0	0
GACCATGATACTAGCC	alt_5740_new	21	33	26	20	29	23	28	28	25	16
TTATGAAACCGGTCTG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
GCAGTTATCTGAGTCG	alt_5740_new	3	14	10	6	6	6	14	4	9	2
GTCCTCACCTCTATCG	alt_5740_new	12	19	14	9	26	12	26	9	26	7
CGCTTTCTTGAGTATT	alt_5740_new	0	3	4	0	5	0	1	1	1	0
ATTATGTGCTGATATA	alt_5740_new	5	4	2	1	0	1	3	0	0	1
GCCTACTCCCTGGTAA	alt_5740_new	14	24	14	14	24	7	30	12	23	9
AGCTTTGTATGTAAGG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
ACCATTGTGGCGGCGT	alt_5740_new	10	9	15	15	19	11	19	12	15	3
AGTTCGTTTCATGTTC	alt_5740_new	129	186	138	121	181	108	213	106	201	119
CGTACATGCCTAGTAA	alt_5740_new	28	28	33	22	43	20	37	31	43	12
GAGCGGATTAGTATCT	alt_5740_new	5	12	7	6	9	8	6	6	17	6
TCCGTAATTGGTATAC	alt_5740_new	60	81	61	42	75	40	84	47	105	37
TGTCCATACTGACTGC	alt_5740_new	2	5	7	15	12	5	9	8	7	10
TTTGTGGCGCGCATTG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CCTGCGGTCATACTAC	alt_5740_new	10	23	8	7	33	10	23	6	23	8
TGAAGATGCTTCAACA	alt_5740_new	15	15	8	18	16	20	14	9	23	13
TAATGTTTACATCTAG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CATTCTACCGTGTCTG	alt_5740_new	0	0	0	0	0	0	0	0	0	0
CTCTGGCCTCTGCAAT	alt_5740_new	3	9	1	1	13	3	20	1	10	4
GTGGAACTTCTAGAAC	alt_5740_new	0	0	0	0	0	0	0	0	0	0
TGTCCCGTTGTCTTTT	alt_5740_new	35	42	45	38	48	32	53	37	41	33
GTCCCAGAATGACAGG	alt_1841_reverse	62	56	62	54	49	28	58	52	55	41
AAGGCACAATCCTAGG	alt_1841_reverse	13	11	30	8	12	8	17	11	19	7
GTCGTAGTGATATAGC	alt_1841_reverse	121	137	152	130	124	109	155	133	142	121
ACGCGCTTTCCCTCGA	alt_1841_reverse	38	35	33	31	41	32	45	34	31	42
TTTAGTAACAGCTTGG	alt_1841_reverse	40	33	52	38	40	30	43	51	52	27
GCTCCGTTCGCCAACG	alt_1841_reverse	6	6	3	11	5	6	6	5	4	6
ACATTAAATCTCTGTT	alt_1841_reverse	62	66	75	60	63	65	82	59	76	43
GTCAGCCTACTGCCAG	alt_1841_reverse	1	5	6	5	14	6	4	3	6	4
CGGTATTAGCAGTATA	alt_1841_reverse	10	8	13	20	17	19	12	19	20	18
GCTGCAGCTTTTACAT	alt_1841_reverse	22	25	19	14	15	22	43	22	30	14
CGGCATTATTCGTTAC	alt_1841_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGGCTGATCTTTC	alt_1841_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGTGATGACTCCC	alt_1841_reverse	0	0	0	0	0	0	0	0	0	0
ATCCATGGTATTCCGG	alt_1841_reverse	80	86	131	102	141	110	112	111	105	77
TACTTCCAGCCTAGCC	alt_1841_reverse	31	26	34	25	25	30	23	17	25	29
CGATTAAGCCACCTTA	alt_1841_reverse	47	57	83	46	49	44	72	51	63	50
GCGTAGGTAATACCAG	alt_1841_reverse	9	3	6	4	4	4	10	5	5	4
CTTAGTCCAATCACAT	alt_1841_reverse	1	5	2	2	6	4	3	6	3	6
TTGCTGAACCCCTTCA	alt_1841_reverse	0	0	0	0	0	0	0	0	0	0
GCTGTTTATGTGTGGT	alt_1841_reverse	12	8	15	18	16	11	15	9	14	6
ATGCGCTTCTCCCCTT	alt_1841_reverse	30	46	23	25	57	28	62	31	57	32
AAGCTCGCTGCTATTT	alt_1841_reverse	125	100	129	121	112	102	142	91	120	102
TCTCTGCCACTAGGAA	alt_1841_reverse	27	27	36	23	29	24	38	27	47	11
TAGACTGCGAACTGCC	alt_1841_reverse	23	18	31	27	19	30	34	30	34	24
GCCCACTAGGGAGAAA	alt_1841_reverse	70	77	115	69	86	57	70	53	100	56
ATTTCTCTTTGTTCTA	alt_1841_reverse	9	4	7	14	8	10	6	10	7	10
GTGGTCGAAGGGTCAT	alt_1841_reverse	39	36	84	45	56	53	48	42	62	28
TGTCGGTCCTGCTGCG	alt_1841_reverse	13	5	7	3	8	2	4	8	9	4
AATGCCCTTTACTGAA	alt_1841_reverse	67	45	83	69	60	48	52	61	53	71
TTATACAGTTTAGGCA	alt_1841_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGCCCTTACGCAT	alt_1841_reverse	10	15	23	17	20	11	17	8	9	10
GTGACAGACCGTGTGG	alt_1841_reverse	60	65	71	71	75	82	65	55	80	48
GCCCAATCGCGTCCTC	alt_1841_reverse	41	51	60	43	39	45	58	39	54	35
CCAGGTTCTGTGACTT	alt_1841_reverse	25	37	41	39	40	38	47	28	46	24
TAACCGATCTGTATCT	alt_1841_reverse	18	22	25	40	26	18	33	20	35	22
CTATAGACCGTATCCA	alt_1841_reverse	18	24	14	13	24	6	14	19	18	13
GTACCGAAGTGATCAT	alt_1841_reverse	191	193	226	168	205	173	216	204	197	149
GTGAGACTGCGCGTGA	alt_1841_reverse	64	85	83	77	76	67	85	46	99	61
CCTGTCTTGATCTTAC	alt_1841_reverse	15	36	29	30	28	28	47	16	36	15
AGCTGTTATCGCACAC	alt_1841_reverse	51	31	55	49	45	50	63	57	36	51
GGTTCAGTATTTCTAA	alt_1841_reverse	61	59	77	52	54	46	55	52	58	54
GTTGTTATGTCTCCTC	alt_1841_reverse	104	82	113	98	69	89	97	96	90	94
TTTGGCCCGTATGTCA	alt_1841_reverse	48	43	60	46	42	52	38	43	50	44
GTTGTCCGTATTGGGC	ref_5754_new	18	40	29	22	49	19	46	21	56	15
GACCAGGGTTTTCAAA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GCTGGTTAAAAAGCGC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
CGTCGGATGGCCTTTG	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GTTACACCAATTCCAC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GCTCCTCTTTTCTCTT	ref_5754_new	0	0	0	0	0	0	0	0	0	0
TCGAACTCTATGATAC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
AAGCATTTGTACGTTA	ref_5754_new	2	8	12	5	9	5	12	2	9	2
AATTATCCACCCAAGC	ref_5754_new	23	34	19	16	26	20	26	28	27	12
GATAGCCCGCGCAAGT	ref_5754_new	42	80	46	42	84	41	90	33	78	40
AACTGTATTTGGGTCC	ref_5754_new	1	4	1	0	8	1	3	7	2	0
TCCCCAGCCGCCCACT	ref_5754_new	29	44	29	25	46	22	34	27	49	25
ACATTTTTAGGTAGTA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
CTTTCGGTTATCTAAA	ref_5754_new	11	14	8	7	23	9	39	17	31	10
TTAATTTTAGGTAGGT	ref_5754_new	14	27	24	17	18	18	27	10	27	15
CTGATGAGCATCGATC	ref_5754_new	20	45	35	25	56	18	61	23	53	19
TTGCTTGTTTCCGTCG	ref_5754_new	13	29	14	11	22	16	30	9	43	15
CCCTCATGTTTTTAAG	ref_5754_new	5	33	6	8	31	6	28	8	33	10
TTTCGATTTACTCGCA	ref_5754_new	36	64	36	29	91	41	80	40	77	26
TACAGATCTATACGTC	ref_5754_new	4	3	8	7	6	11	9	4	11	2
CTAGGCAGTACGCCTA	ref_5754_new	11	21	15	6	34	14	41	10	21	9
TCACCATGTTCTATGC	ref_5754_new	1	3	3	2	3	2	6	1	4	4
TCGGCAGCCCTATCGA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GGCTCGGCTTCTCCTG	ref_5754_new	0	0	0	0	0	0	0	0	0	0
CGTAGCTCGCACCCAT	ref_5754_new	46	92	52	56	90	54	96	60	118	69
ATTCTTAATTATTCAA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
TCCCAAAGCAATTGAG	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GTACCATCCAGGATAG	ref_5754_new	3	24	12	13	16	9	12	7	14	5
AGATGTGGCGCTCCTT	ref_5754_new	7	16	12	5	8	10	24	16	15	11
AGGCAAAGTCCGGCAC	ref_5754_new	18	34	29	29	39	18	35	27	55	17
TGGGTATATATTACTT	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GTAATTCGGTTTCTGT	ref_5754_new	36	33	27	29	52	26	44	24	43	25
TGGTTTGGAGGTTGTT	ref_5754_new	13	29	14	13	35	12	36	23	19	18
CTTCTGGTGAGTTTTG	ref_5754_new	16	36	17	13	32	20	18	10	24	11
GGGTTCAAGGATATAT	ref_5754_new	9	19	13	3	13	8	16	5	21	8
TTGGCCCATCCGTTTT	ref_5754_new	0	0	0	0	0	0	0	0	0	0
CCTTGCTTATATTGTA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
TGCTATGTCGCCCGCC	ref_5754_new	52	81	71	63	85	70	107	50	101	44
ACCAGTAATTGGCCTT	ref_5754_new	10	22	8	17	20	14	25	14	31	12
TAGGCGTACTCAGCCA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
ATGATATTTTTGTGAT	ref_5754_new	10	12	9	5	12	11	9	3	20	5
CTCTTTGGCCCAATCT	ref_5754_new	13	31	19	4	27	15	28	9	35	13
ATTTTTCTTTAGCTTA	ref_5754_new	42	51	44	30	48	30	51	27	58	30
TCTTCTGGTACGAACA	ref_5754_new	26	46	49	33	46	25	44	27	57	36
CGTTCAGGATTCTGCC	ref_5754_new	38	58	41	38	70	39	61	40	85	34
TCCATACAGCCGAATG	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GTTCTCTTGAGGCTAC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
TTTCATCCCTCTGAAT	ref_5754_new	19	14	14	10	25	15	18	11	24	4
TGAGTCAATGATGATA	ref_5754_new	9	19	17	8	35	23	30	10	33	18
CTGATCAGGCGTTCCA	ref_5754_new	21	35	15	20	29	9	33	16	60	13
CACTGACAATCTAGAA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
AGCGTGTTTTCGACTA	ref_5754_new	0	0	0	0	0	0	0	0	0	0
AGGTACCAGCTGGGGC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
ATGTGGTTCACCAATC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GACTAGCATAGACTCA	ref_5754_new	3	45	9	10	53	9	67	4	56	5
GCCTTCATCGCCACAC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GTCTTATCTCTACATC	ref_5754_new	13	15	12	13	26	12	23	10	28	12
GGGAATGGTTTCTCCT	ref_5754_new	0	0	0	0	0	0	0	0	0	0
ATGTCCCTCTATAAAG	ref_5754_new	8	5	5	8	13	3	9	3	6	7
GGCTTGCCGTTGGCAC	ref_5754_new	3	11	7	8	9	4	11	5	17	4
CGATTACGTTAAGGCA	ref_5754_new	9	15	15	8	16	13	10	11	17	10
TAAGTGTCTCGCTACT	ref_5754_new	21	38	18	12	42	13	44	20	36	10
AAGAACGGAACCCCAG	ref_5754_new	29	52	40	33	65	27	62	17	54	36
CGCTGAAATGGATCGC	ref_5754_new	5	16	4	11	18	6	18	10	19	9
TCCGATTAAAGCTCCT	ref_5754_new	83	95	62	56	99	60	99	50	109	53
TTGCGCGCAGCTTTCT	ref_5754_new	28	30	39	23	38	27	34	31	55	21
GCGTTGAGTTAGTAAA	ref_5754_new	1	2	6	4	6	1	2	1	5	4
TAAATGCTTGTGGCAA	ref_5754_new	27	104	42	32	109	44	121	47	117	28
CTCCGGGCTGAGCAGG	ref_5754_new	0	0	0	0	0	0	0	0	0	0
TTAAGGCCATGGACCC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
AACAAGTTAGAGGACG	ref_5754_new	0	0	0	0	0	0	0	0	0	0
GCGCGACCCAAGCTCG	ref_5754_new	9	25	20	20	34	14	19	11	43	14
TGGCTGGATGATGGGT	ref_5754_new	0	0	0	0	0	0	0	0	0	0
CGTCTTAAGGATGCTC	ref_5754_new	7	7	8	3	15	5	26	7	15	10
CATAGGAACAAACTCG	ref_5754_new	13	25	16	16	26	7	17	10	23	17
CCCGGGCATGAGTGCG	ref_5754_new	16	30	11	4	39	12	35	10	44	6
TAATGGGCGGGGTCTT	ref_5754_new	7	11	9	8	18	8	17	6	14	16
TTTCACCATTCGTTGG	ref_5754_new	13	21	17	14	22	9	40	8	18	6
CGACTCCTTTTGTAAC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
CATGGTTCAAGCTTTA	ref_5754_new	30	54	37	39	67	36	69	42	59	45
ACCTGGTCTGGGAAAG	ref_5754_new	9	4	3	3	4	1	9	5	11	1
TGCACCTATCCCTCGC	ref_5754_new	11	40	15	19	44	14	29	10	39	6
GTAAGTAGTAGCATTC	ref_5754_new	0	0	0	0	0	0	0	0	0	0
TTAATTTCGAAAAGAA	ref_5754_new	38	74	61	44	71	52	72	31	78	49
GGCAACTCTAGGTTGA	ref_5754_new	20	55	26	15	47	14	28	23	38	22
TGTCGCTCTCTCAAAC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TACGGTTCTTTGGTGT	alt_5771_new	24	41	49	31	45	37	46	32	47	26
TTGCCATGCCAGGCTC	alt_5771_new	6	6	5	5	15	5	12	7	14	7
CTATTATGTTGATTGT	alt_5771_new	42	43	49	31	33	26	29	36	33	40
CATCAGAGGGCGACTA	alt_5771_new	5	45	10	12	33	5	46	4	42	2
CCGTTGTTTCTAAGTG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TGTTCTTTGGTATCGC	alt_5771_new	30	34	22	20	24	16	35	26	37	17
TGTGGTTCTAGTGTAC	alt_5771_new	11	19	13	10	7	4	20	4	18	4
AACCAAATTTTGCGTT	alt_5771_new	13	15	14	16	15	6	28	5	24	8
CCACCTTCCGTACGTT	alt_5771_new	37	57	54	53	52	37	53	38	66	34
CTCTGACGACGCGATT	alt_5771_new	37	47	46	30	46	24	37	35	49	47
AAAGTAGAACCTGGAG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
CTAGGTATTCTTAGTC	alt_5771_new	1	2	0	1	6	1	5	1	6	1
AATCTTGTCCGGTGTT	alt_5771_new	43	50	43	46	57	30	50	33	46	25
GCGTCTACTGCGAACT	alt_5771_new	0	0	0	0	0	1	2	0	0	0
TCCAGCATACTTATGT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
CAACTGCATTATGTTA	alt_5771_new	0	0	0	0	0	0	0	0	0	0
GGGCCAGGACAATCCA	alt_5771_new	22	14	26	21	29	10	25	21	29	21
TGCTACACGACGGACA	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TGTCACTTTCTGCGGG	alt_5771_new	29	69	66	37	65	44	66	45	71	43
AAACTGAAGCGTTCTA	alt_5771_new	11	15	7	13	17	13	17	9	19	9
GTGTTTGGGCACCGGT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TCTCGGCTTAGCGTTC	alt_5771_new	42	52	40	50	60	26	42	25	45	27
TATGCTCACCTCGAGT	alt_5771_new	4	14	2	3	17	10	10	1	7	2
TGTACGTTTATATTAC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
AAACAATCGTTCCATG	alt_5771_new	27	29	34	36	33	24	47	30	27	30
ACAATGTTAAGCTACC	alt_5771_new	23	28	26	18	32	20	27	10	35	14
CATCTCCATCTGGTAG	alt_5771_new	0	0	0	0	1	0	1	0	0	0
TCGGTCTTTCGGGCCC	alt_5771_new	27	36	13	28	39	21	45	21	32	19
GGATTGGGGAGGGCAT	alt_5771_new	14	13	28	11	14	18	18	11	12	11
TACAGGTGTTTCTAGC	alt_5771_new	0	2	1	4	13	3	0	2	8	1
TGAATACCTCTAGATG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
GCCTGCTCATAACCTA	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TAACGCATACAGTTCA	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TGAGGGGTTTGCCTGC	alt_5771_new	58	86	87	68	108	51	96	65	108	70
TGTGATTCTTCACGGC	alt_5771_new	2	5	9	5	2	3	6	3	4	0
AGACGTATTAATTCAC	alt_5771_new	46	35	30	30	39	20	40	31	38	17
CTAAATTCCTAATCCG	alt_5771_new	5	3	6	1	6	3	6	1	1	1
TAAATGTTTCTCGATC	alt_5771_new	14	26	26	22	26	25	29	17	28	15
GGTAAATTTCAACTCC	alt_5771_new	44	40	43	32	45	33	35	23	44	26
GGGCTCTGAGCTTCAC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TCCGATGCCACGAGCG	alt_5771_new	25	44	40	29	45	24	40	29	52	31
GCGTTGTCCTAGACGC	alt_5771_new	4	12	2	1	4	3	5	0	11	3
GCTAGTGGTACGTCGC	alt_5771_new	9	11	16	10	20	15	12	12	10	5
GTATGTGAGCTTCCTG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
GTGGTGTTTTTGCCAC	alt_5771_new	59	83	57	64	79	47	69	49	60	62
TTGACCCTTCCTTGGC	alt_5771_new	19	19	29	13	19	24	27	13	20	17
ATAGGCAAACGGTACT	alt_5771_new	22	41	28	27	29	25	29	19	38	18
AACGATCGCTCGGACA	alt_5771_new	0	0	0	0	0	0	0	0	0	0
GCGCCCGCTTCGCCTT	alt_5771_new	18	31	29	37	29	28	34	17	34	17
TTTATGGCGCAAACTC	alt_5771_new	24	47	39	21	31	25	28	28	32	29
TCAGATGCGTTAATAC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TCTGCGTCATAGCTCC	alt_5771_new	4	3	6	5	3	3	9	8	15	6
CCGGTTTGACCTTGCT	alt_5771_new	39	67	36	21	56	33	65	21	77	28
TTAATTTTTCAATAAG	alt_5771_new	30	39	41	37	56	26	56	26	47	31
TCGTTTTCCCCCCCAG	alt_5771_new	27	22	32	21	25	18	39	23	38	21
GATGTATGTTCCGGGG	alt_5771_new	31	29	22	25	17	26	27	19	30	21
ACACGTTTAGATCGAT	alt_5771_new	28	49	40	35	46	38	39	16	62	14
TTGGATCACAGCGACC	alt_5771_new	17	17	14	13	16	16	23	12	17	6
TGCTAGCGGTAACGTG	alt_5771_new	25	43	40	25	41	30	35	33	46	34
CCAGTGCTCCAGTTCG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
AGCGCTGGAGTTAAAC	alt_5771_new	28	55	40	45	55	29	52	34	56	24
CTTTGTTCCTTTAGTT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TAGGTTTGCCCAAGAT	alt_5771_new	13	21	26	14	26	14	29	19	31	15
AGCACCTGCCTGACTT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
GCTAACCAACGCCGTC	alt_5771_new	2	6	10	7	8	6	8	8	13	7
TTTTCCTTCTAAAAGC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
GTATCCAGCGAATCCT	alt_5771_new	19	16	16	16	13	17	30	19	16	14
ACCGCGCGCTGTTTTC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TGTTGTGCGATAAACT	alt_5771_new	79	99	103	88	95	99	86	67	118	61
TGAACTGGCTAGCGTC	alt_5771_new	6	8	8	8	3	4	2	4	13	7
CTTAGCTCAGTGCCTG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TGTAGATCTTTGTTCC	alt_5771_new	8	8	20	10	2	11	18	11	13	7
ATTGCTCATGAGATGA	alt_5771_new	5	7	6	10	2	5	5	2	5	7
GTAGGCATTTTTTAAG	alt_5771_new	26	19	19	12	20	19	24	18	21	17
AATACGGCGATTTCGT	alt_5771_new	33	37	38	41	44	38	27	24	34	32
CGTTTGCATTATATTC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
ACGACTGCCCATGTCC	alt_5771_new	18	18	23	17	26	23	30	14	38	13
TTTGGTAATTGACCGT	alt_5771_new	90	111	105	67	128	82	104	80	107	55
CATACTGGCGTAATAT	alt_5771_new	5	11	9	3	15	4	10	5	6	4
TATCTAGAGCAGTTAG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TACTTCGGTTAAGCGG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
CCAATGTGCGTATGTG	alt_5771_new	40	76	55	59	77	40	71	42	78	55
TATCCCATTTGTCGAA	alt_5771_new	3	3	3	6	9	2	4	7	13	5
CCCAGTCTGGTCAGTC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
ATTCTCGCCAATGGGT	alt_5771_new	0	0	3	1	0	0	0	0	0	0
CACGGGTTCTCTAGGA	alt_5771_new	19	30	27	24	38	27	32	26	25	24
CGCCATATCACTCGAT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TCCTGACTTGTCTTTG	alt_5771_new	26	38	25	43	34	19	42	24	45	14
AGATTTGGGCTCATAC	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TTCAGTCCTACAAACA	alt_5771_new	16	15	21	15	21	12	20	14	24	14
GGTTCTGATTACGGGT	alt_5771_new	3	4	5	4	2	0	5	6	7	3
GAGGATTTAGTGGTTA	alt_5771_new	38	44	28	31	37	31	41	32	35	25
TTTAATTGATGGTTTG	alt_5771_new	8	16	12	8	10	12	22	11	15	5
AATTACGGCATGTGTC	alt_5771_new	45	42	63	29	45	45	57	43	34	38
TGTTCGGGATGTTTAT	alt_5771_new	4	6	9	7	12	8	9	7	10	6
CCCAATGCTAGTATTA	alt_5771_new	56	70	44	40	69	40	76	41	77	24
CGCAGTAATCTGATCG	alt_5771_new	42	50	31	37	38	28	40	32	46	35
CGCCCAATGCAATCGG	alt_5771_new	20	16	20	19	27	24	32	12	15	16
TTTCAGGATTGTACAC	alt_5771_new	10	28	17	18	25	16	29	13	33	12
GTCCTCAGGGGTGGCT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
ACCGTTTCCGCCTCGG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TGCCCAGCTCGCCTAC	alt_5771_new	105	129	126	125	129	102	145	88	140	110
GTGTCTGTCACCTTGG	alt_5771_new	4	3	2	2	2	2	2	0	1	1
ACTCCACATATCCGTG	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TAAGATTGGGTCCTTT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
ACTCCGTGTACTTGAT	alt_5771_new	0	0	0	0	0	0	0	0	0	0
AAAGTATCCCCTTTCC	alt_5771_new	6	12	13	7	7	8	14	3	11	4
TGACAGGGATATTACA	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TTGTAAACCTATTCGC	alt_5771_new	10	23	17	15	15	16	18	12	18	16
GAATTGTTTTGGATAC	alt_5771_new	31	46	31	40	33	15	38	22	38	24
GCACTTCCTTTTTGTA	alt_5771_new	0	0	0	0	0	0	0	0	0	0
TGCAACCTCGAATACT	alt_5771_new	83	95	101	84	104	70	104	76	96	57
GGGGCCCTTTAAGTCT	ref_618_upstream	18	2	12	7	5	7	9	15	5	8
TAGCTCTTATCGTGAC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GAACCGCTCTACCTAG	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GCACGGTGTGCGTCAG	ref_618_upstream	46	21	59	40	21	52	17	23	20	45
TTAAGTTTCACGATAT	ref_618_upstream	99	33	147	118	53	109	69	104	51	91
CACATACCTTGCAATA	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCATTCTTGCCGG	ref_618_upstream	34	7	23	30	8	13	16	22	13	20
CCATCTCAACCTAGTG	ref_618_upstream	40	25	56	47	28	32	23	40	33	23
TCTCCACATCATACCT	ref_618_upstream	89	20	90	63	22	71	27	72	39	54
TGGTCATTCGGGGTGC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTATTATTCCAGT	ref_618_upstream	213	70	268	200	80	209	102	146	83	188
AGTAAAGGCTTTCGCA	ref_618_upstream	33	12	46	27	8	29	15	38	14	22
GAGTACCTGTCAAGTG	ref_618_upstream	19	8	21	14	6	22	9	21	11	16
AATTGATGTTCTAGTT	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GCCATTTAAACCCTCA	ref_618_upstream	63	37	90	78	47	101	45	91	55	95
GTTGCATTTGTCTATT	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TGATTCCGCCCGCTAT	ref_618_upstream	60	37	113	70	50	64	32	91	41	86
GTAAGCCCTAGGTTAT	ref_618_upstream	146	63	188	145	65	141	57	147	66	138
GCAGGGAAGCATTAAA	ref_618_upstream	24	13	35	40	6	22	13	13	11	16
GATTCTAATATATGTA	ref_618_upstream	221	80	239	214	99	244	80	197	104	182
TACACTGGGTTGAGTC	ref_618_upstream	125	42	135	92	40	95	42	81	42	84
GAGCGCCTAAAGAGTG	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCACCGCGTTCGC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
CTTACAGGGTGTCCAA	ref_618_upstream	5	3	9	8	4	3	0	4	6	4
TCGTTGGATAACCCTC	ref_618_upstream	40	26	56	71	34	56	24	43	16	47
ATGGCTGTGAGACGGT	ref_618_upstream	39	24	60	45	20	51	21	38	25	37
GAGTTTTGTCGTACTT	ref_618_upstream	15	9	13	6	10	7	6	10	9	7
TTTATTGTGGTAAACG	ref_618_upstream	28	13	36	37	17	33	18	37	17	29
TCGAGACGTGTATGTC	ref_618_upstream	16	13	27	24	6	32	10	22	9	26
CCAGAGGATGCATTGC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTAGTCACGCGAG	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TACAGGAGTTTCCATC	ref_618_upstream	120	39	140	135	76	132	73	105	60	124
TACTACTCTCGGTCAT	ref_618_upstream	147	91	176	158	77	160	86	157	92	113
TGCGTTCAATAAGGGA	ref_618_upstream	34	11	27	19	9	30	10	19	8	22
TGTGGTGTACGCTCCT	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGTCAGGTAGCGC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
CATGCTGTGCCATCTT	ref_618_upstream	25	17	24	28	25	26	25	26	22	22
AGATATATTTTTTCTC	ref_618_upstream	137	54	160	148	66	155	64	158	75	117
TGCCGTGTTACTGTTC	ref_618_upstream	28	9	27	30	12	29	10	12	14	19
CTGGGTCATTGATGGG	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCTGCGGTTTCCG	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
ATATTATAACCTAAAT	ref_618_upstream	217	85	243	227	85	194	78	188	79	179
GTTAAAAAAAGCTAAT	ref_618_upstream	94	41	113	80	43	75	50	74	32	83
AATCAGTATGACCCCT	ref_618_upstream	87	31	112	100	33	78	34	83	31	81
CTTAGCTTGGTCGCAA	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TTCTATTTTGTACGCG	ref_618_upstream	31	19	31	39	29	34	23	27	14	20
TACAGTCTTTTGTAGG	ref_618_upstream	90	33	93	91	38	89	38	69	44	78
CCGCGGACATTCGGAT	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTGTTATGTTTTC	ref_618_upstream	18	5	14	17	12	23	7	7	7	17
TGACCTCCGGAGGCTA	ref_618_upstream	64	26	71	55	26	44	22	65	33	39
GTTTGAACGTTTCCCT	ref_618_upstream	139	56	119	120	66	120	65	107	48	127
ATGCAAAGCCCACAAT	ref_618_upstream	73	26	101	100	39	94	35	80	30	109
TCCCACTCCGTCGGGA	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GTGTATCCCAAAAGCT	ref_618_upstream	118	56	173	130	51	133	60	126	48	101
ATCAGTCGCCCTACAC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGGTTCTTAAGCC	ref_618_upstream	159	66	194	172	76	146	84	155	78	142
TGTTGATCAGCTTATC	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCTGAGCTTACCA	ref_618_upstream	16	2	20	15	5	14	4	10	6	9
AAACGCAGATAGGACA	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
GAGCATAGCTAGCGGA	ref_618_upstream	155	50	149	151	43	122	57	125	65	119
GTCTTAACGGGACTTG	ref_618_upstream	3	1	3	4	0	6	4	8	0	3
CGCTACGGGCTGTTAT	ref_618_upstream	0	0	0	0	0	0	0	0	0	0
CATACATTACCCCATT	ref_5419_RC	30	58	44	42	63	33	57	35	69	35
ATTTGCCTCTCTGTGT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTTATCCCCGTT	ref_5419_RC	1	8	7	8	9	2	6	6	16	5
GAGTGGCTCATTTCCG	ref_5419_RC	109	110	133	101	113	79	99	87	120	91
TGACTCCTATTCAATC	ref_5419_RC	11	10	9	5	14	5	10	6	11	9
GCGCTGCATGCATTGT	ref_5419_RC	76	113	92	72	109	77	121	69	116	61
GATGCGGGTTCTCATT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CGTAAAAACCGTACGA	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CTGTGTTGGATCCTTC	ref_5419_RC	25	27	32	26	34	18	39	24	22	20
AATGTAAGCTTGGCGC	ref_5419_RC	3	7	6	8	9	8	11	4	8	7
CTCTCAGGTCGTGACT	ref_5419_RC	49	59	50	35	58	44	45	49	69	38
GTGCGCAGGTCCTTTT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
ATCAAGCTGAACGGTT	ref_5419_RC	82	105	102	67	92	71	96	80	74	58
CGTTTTTTTCCACCTG	ref_5419_RC	10	16	12	8	10	15	13	10	14	6
CCGTAGTGAGAATGTT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TAGGGCCTCCACGGAA	ref_5419_RC	19	26	15	20	16	28	9	16	11	14
GTGAGAATCGTTTATC	ref_5419_RC	76	82	96	70	68	70	93	63	104	69
TAACAATCATAACGCC	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
AGTCACCGTATACCTT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
GCCAACCTTTACTCGG	ref_5419_RC	12	42	26	21	43	20	41	20	42	16
GTTAAGACGCGCGTTA	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
GCTCACTTGATAGCTC	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTCAAACTGGGG	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TTGCGGGTTGCCTGGT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
ACGGTCCACCATGATG	ref_5419_RC	5	3	9	6	7	5	7	4	9	6
ACGAAAGTTGTTTGTG	ref_5419_RC	124	149	142	111	181	100	155	91	179	110
GTTAATTTCTCATATT	ref_5419_RC	3	2	1	3	4	2	0	2	2	2
AAGAGTACGGCGGGAC	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CGCCATCTCGTGCTAA	ref_5419_RC	10	14	17	19	12	19	15	19	11	6
CATCAACCTATTATAT	ref_5419_RC	28	24	36	27	42	19	34	19	37	25
TCACCTCGTGGACTCC	ref_5419_RC	11	30	11	12	17	14	19	9	19	9
CTAGAGGAACACTGAA	ref_5419_RC	15	40	41	11	23	23	47	28	31	20
ATCCCCCAAGGGGTGT	ref_5419_RC	85	56	76	52	69	41	71	50	56	39
TTAGATCACTCCCACG	ref_5419_RC	17	27	20	15	32	9	38	10	42	12
ATCGCGGTCTTAACAT	ref_5419_RC	12	15	12	6	17	8	10	4	9	8
CGTCGGGTCCTTTAGC	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
ACATAGGATCATTACC	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TTTTACGTTGTGCGTT	ref_5419_RC	7	9	8	8	7	8	7	8	9	8
GTGGTTGTGCGCGGTT	ref_5419_RC	76	117	78	76	122	72	131	85	124	59
ACTCATGCTGTTGGTG	ref_5419_RC	5	4	4	2	4	0	4	3	4	10
ATCCATTATACCGCAT	ref_5419_RC	158	198	177	191	213	149	201	152	236	152
CGATTCCGGACTTCAA	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CTCCTTCCACTGCCAT	ref_5419_RC	23	39	38	23	40	21	36	20	37	24
GGAAATCTCATTAGGC	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TTTCATGTTCTTTTAT	ref_5419_RC	5	10	9	17	11	8	15	7	15	6
CCTTTTAAACTTGTCA	ref_5419_RC	16	43	48	46	55	23	60	29	51	24
ACGTGCCTGCCAGCTT	ref_5419_RC	11	20	18	13	8	11	15	8	15	8
CTACTCCTCGGGCCGG	ref_5419_RC	1	7	3	3	6	3	2	6	2	3
AGTTGTATCATTCCTT	ref_5419_RC	17	14	18	12	22	3	21	19	14	9
GTATATCGGTTACTAT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CACATTACTCCTGCAT	ref_5419_RC	13	23	15	11	21	22	22	24	16	18
CGACATCGTAGATACT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
GATACGACTGTTTCAA	ref_5419_RC	74	90	110	76	102	75	94	94	125	90
ATTATGCACTCTTTCA	ref_5419_RC	75	82	84	62	90	54	90	54	113	57
TTTGTCAACTCGTCCT	ref_5419_RC	36	53	37	22	26	23	32	28	27	24
ATGGCATATGAGCAGA	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
ACTGATTTGCTTTATC	ref_5419_RC	23	18	16	22	18	20	28	23	19	18
AATTTTTAGTCCGTGG	ref_5419_RC	38	39	39	27	29	27	41	29	43	21
AGCACCGTCGAGTACA	ref_5419_RC	9	7	4	5	14	8	5	4	16	3
CTCGATGGGCGTAGAA	ref_5419_RC	172	158	198	173	166	147	175	122	209	139
AGGGTTTGGGAGAGAA	ref_5419_RC	30	14	23	13	23	13	25	22	20	15
CCCAGCCCGGAACTTG	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TTTAGCGCTAGAGCAA	ref_5419_RC	12	13	16	10	5	6	18	11	7	9
TGGCTACTCCTGATTC	ref_5419_RC	23	30	27	29	24	22	30	15	25	38
GCATATTTGGCTCTCC	ref_5419_RC	78	98	88	100	125	70	102	75	120	79
GGCTGTTCGTTCTATC	ref_5419_RC	12	13	22	13	15	8	18	8	18	14
AAAAGTATTAGATAAG	ref_5419_RC	47	61	52	49	59	36	49	42	70	46
CCTGCTATTGAAATCT	ref_5419_RC	13	25	29	15	14	30	13	12	28	14
GGTTTTCCGTGGTGAA	ref_5419_RC	3	5	9	6	7	2	8	4	5	8
TTTATTTGTCATTCCG	ref_5419_RC	4	11	12	4	11	9	15	11	8	10
GTTACCTATCCGCAGG	ref_5419_RC	22	18	26	9	17	15	20	13	31	8
TGTCCTCGAAGTCTAG	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TTTTCATTTCCGGTGG	ref_5419_RC	130	102	128	95	126	121	125	108	115	109
ATTGTGGAGGCTTATA	ref_5419_RC	18	20	23	21	29	22	19	15	27	11
ACTGGTACAACCATAA	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
GGCTGCGTTTGTTTTT	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TATCACAAAGCAAATT	ref_5419_RC	32	25	43	38	34	18	37	26	27	26
ATTCAAGCGTTTTATG	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TGATTATGGCAAATTC	ref_5419_RC	22	42	45	26	25	37	46	22	42	39
AAGAGTGCTTGGCGTT	ref_5419_RC	6	9	9	11	8	6	4	7	12	2
TTTACGTCCTGTACTA	ref_5419_RC	5	12	8	5	8	3	11	14	10	7
CATCCCACGCTCTTAA	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
CCGTCTCTACGCGCAG	ref_5419_RC	48	59	34	34	65	31	76	31	66	36
GATTCCCCGTTACCTC	ref_5419_RC	0	0	0	0	0	0	0	0	0	0
TTTCGGCCCAGTCTAG	ref_5419_RC	90	107	103	97	92	86	115	76	118	86
GGATTCTTGAATTGGT	alt_399_missing	0	0	0	0	0	0	0	0	0	0
CTCTTCGCGATCCCAC	alt_399_missing	43	32	48	31	36	34	22	33	27	33
TATCGCTTCTGCCGTT	alt_399_missing	4	2	1	3	4	3	2	3	4	6
GTCGGCTTCCCTCCAC	alt_399_missing	167	157	234	198	180	186	192	191	194	137
TTGATTTAATGTAGTG	alt_399_missing	26	27	23	13	14	26	26	15	16	15
CTAAATTATTGGGTTC	alt_399_missing	18	24	33	20	19	30	33	30	38	32
GAATCCAAGCACCGCC	alt_399_missing	0	0	0	0	0	0	0	0	0	0
CATTTTGACGTCAGTG	alt_399_missing	49	32	32	39	28	45	51	53	53	40
CTTGTAAGTTTCTGGA	alt_399_missing	0	1	1	0	0	0	0	1	4	0
AGCCTTGGCACTGAAA	alt_399_missing	0	0	0	0	0	0	0	0	0	0
TAGCTAGCTTCTTTAT	alt_399_missing	31	44	19	34	29	21	23	29	33	16
CCGAATCCCCTGCCAC	alt_399_missing	275	268	366	328	284	293	329	279	373	240
ACCGGAACAATCGAAT	alt_399_missing	40	65	49	43	85	40	58	48	75	41
TTTCGATGGCTTAAGT	alt_399_missing	4	1	1	3	1	2	7	2	1	4
GCGACATCTTGATACT	alt_399_missing	13	11	14	16	10	15	13	11	4	14
CAAGTTGACCCTGACG	alt_399_missing	56	65	60	63	41	56	70	49	77	43
GAATGGATGGTCTACA	alt_399_missing	2	0	4	0	0	0	0	2	3	3
GCCAAATGCTCGTCCG	alt_399_missing	23	17	23	18	19	24	19	17	16	14
ATGCGCGAATATGTCC	alt_399_missing	23	34	38	23	24	33	26	23	26	25
CTCGGTTCAAGAGTGC	alt_399_missing	24	28	14	14	22	18	20	16	25	9
ATTCGGTGGTGTATTA	alt_399_missing	32	27	22	27	23	36	29	21	31	25
GCTATATCCCCCTGAT	alt_399_missing	12	4	8	6	9	8	9	7	11	13
GACCCCCGGCCTTGAA	alt_399_missing	16	12	21	11	14	14	21	5	11	5
TGCTTCCGGATCCGAA	alt_399_missing	61	37	54	51	37	48	40	51	37	53
TACATTTCAGGCGGTA	alt_399_missing	37	35	36	43	38	43	32	36	41	27
GGCTCCTGAGTACCTC	alt_399_missing	50	30	49	45	48	37	46	50	51	32
CGGAGTTCTGCTTAAT	alt_399_missing	0	0	0	0	0	0	0	0	0	0
TACTGCATGATTACCG	alt_399_missing	96	75	98	96	76	91	83	72	82	80
ACGTTTGCGAAGTGCC	alt_399_missing	19	16	27	15	15	23	16	14	18	13
TAGGCCAATTTGGGAG	alt_399_missing	7	7	9	6	9	6	10	5	8	5
GCGCCTAGCTACTTGC	alt_399_missing	21	21	13	20	23	8	14	20	9	13
TATTCTCCGTCGAATC	alt_399_missing	44	35	29	33	27	25	38	26	39	29
AACTGGCCGTATTGTA	alt_399_missing	67	59	69	79	70	75	78	73	78	80
CACAGGTTTGGGTGAC	alt_399_missing	71	76	61	65	52	58	80	55	71	54
ACAGAAAACATGAGGT	alt_399_missing	17	11	20	20	13	12	13	23	21	20
ACGGTGTCTGACATGC	alt_399_missing	0	0	0	0	0	0	0	0	0	0
TTCTGTTCAGTCTTGT	alt_399_missing	0	0	0	0	0	0	0	0	0	0
ACCGTCTTTTCCTTGC	alt_399_missing	20	27	31	37	27	28	19	22	30	14
AGATTCATATATTAGT	alt_399_missing	23	16	32	16	26	20	23	26	18	28
AACTTACTATTTTTCT	alt_399_missing	0	0	0	0	0	0	0	0	0	0
GGCCTCGATCCGAGCT	alt_399_missing	0	0	0	0	0	0	0	0	0	0
GGCTGGCACTTATACG	alt_399_missing	61	65	84	74	80	63	79	80	85	67
GCCCTGGGGTGCGAAA	alt_399_missing	71	68	87	90	63	83	79	77	76	66
TCAACCTTACTCGTTG	alt_399_missing	48	66	59	46	61	53	66	42	45	42
GGCTGTCAACCATCGC	alt_399_missing	5	6	9	7	4	8	3	2	3	4
AGTCGTATTCAACTAA	alt_399_missing	0	0	0	0	0	0	0	0	0	0
GCGCCACCACCTGGGT	alt_399_missing	23	21	28	10	18	11	19	16	19	16
TATTTTTAGATCACTC	alt_399_missing	3	3	4	1	7	2	2	1	4	5
CGTAGTGTATTGGAAT	ref_903_negative	176	19	204	191	16	200	19	161	17	157
GTAACAAGTGTACTTT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
ACGTTTTTTTCTAGTT	ref_903_negative	837	73	969	861	78	750	82	722	73	743
CAATTACGCCAGCACT	ref_903_negative	1650	127	1953	1774	118	1496	142	1514	126	1487
GATCACTCGTTAACAC	ref_903_negative	3330	264	4025	3369	266	3160	299	3143	277	2874
GAACATCAAGTTCGAC	ref_903_negative	2792	215	3386	2936	205	2709	255	2568	225	2390
ACATCGAACCTAGCGC	ref_903_negative	613	41	844	643	59	539	55	588	74	543
TTCCCCATCTTTTGTA	ref_903_negative	373	57	498	400	50	357	58	361	59	345
TCGCTTGTTATATTTA	ref_903_negative	159	23	198	164	24	156	21	153	11	149
GTAGCCACGTGCTAAT	ref_903_negative	1237	122	1576	1613	111	1325	124	1281	113	1259
GAAATTTTGTGGGCTG	ref_903_negative	1401	133	1749	1410	116	1225	120	1310	91	1258
GCTGGACTACTCTAGA	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CTTAATCGCTTTGCGT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CATCCAGCAGGGGGTT	ref_903_negative	185	18	292	209	19	223	26	201	17	191
ACCTCATCATTGGGTT	ref_903_negative	1866	178	2259	1858	150	1725	157	1679	173	1651
GATTGACGCTCCCGGT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CTTTTTAGTATTCGCT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GTAAAGAACAATGTCT	ref_903_negative	848	61	1041	856	54	834	90	800	81	832
TGTACCTCGTCGAACG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TGATGACGAGGTATCC	ref_903_negative	962	75	1139	1007	69	941	89	951	99	865
CGGTCTGCAATCCTAT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CACAGATATTCGCAGT	ref_903_negative	1	0	3	1	0	7	0	0	0	1
CTATCATTAGATGGTG	ref_903_negative	367	29	388	379	16	393	37	355	38	313
TTATAGTTTACAGTCT	ref_903_negative	418	37	530	436	42	432	47	425	24	379
GAGCTATTCCCGCATT	ref_903_negative	1733	155	2082	1853	173	1552	198	1706	189	1590
TAGCATCTCGCACTAA	ref_903_negative	132	9	131	91	10	91	7	100	9	84
GCTATACGCTTCCCAC	ref_903_negative	199	25	227	195	23	210	20	197	20	165
CATTTTAAACCAAGGG	ref_903_negative	3528	317	4170	3695	278	3328	303	3422	311	3194
CTCTGGAATTGGCCCA	ref_903_negative	1708	140	2158	1844	130	1618	169	1656	169	1608
ATTCCATCCAAGTCCG	ref_903_negative	187	16	205	214	15	196	23	191	20	181
ATCTTTGGTTGTCCTG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CTGGGTTTAGTGGATG	ref_903_negative	1220	88	1369	1172	116	1130	129	1080	103	1038
AGTCGTTGTTCTGTCG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GATATTCTACCATTTG	ref_903_negative	6736	528	8300	7115	612	6573	597	6525	520	6341
GTCTAACGCTGTTTGC	ref_903_negative	2067	145	2299	2145	179	1901	160	1931	172	1826
TATTATTAATTTCCGC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CGAGCTGTATTAATAT	ref_903_negative	334	23	378	341	32	305	33	324	31	279
ACCCGCTGGACCCAAG	ref_903_negative	943	91	1114	1014	65	880	101	863	71	785
AGTCCGTTCACCCTCG	ref_903_negative	183	20	216	182	16	181	11	198	11	153
TCTAGCTCTGTAAGCC	ref_903_negative	100	11	136	116	16	113	10	90	18	88
ATATAGGCGCTCCTAT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GCCCTGTTTCTTTTCC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CGCTGTCCGCTCTACT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GCAGGCAGGTTCTCGA	ref_903_negative	453	36	546	488	38	465	34	395	28	422
CGGCTCGCGTTGTATC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GTGTAGCTCATGGGTA	ref_903_negative	0	0	0	0	0	0	0	0	0	0
ATTGGGGTTTCAGACT	ref_903_negative	247	17	285	245	24	244	31	202	17	212
CTCTTCTCGTCGCCTG	ref_903_negative	649	61	815	665	66	622	54	579	57	521
AGTTTAGTCATAGTAG	ref_903_negative	1386	123	1692	1372	157	1387	146	1334	125	1237
GGAAGTAGCAGCAACG	ref_903_negative	1051	98	1485	1177	90	1174	128	1123	105	1031
TGATAACGTAAGTCGG	ref_903_negative	1965	183	2484	2008	136	1969	182	1547	156	1629
AGAACGGATTAGGCGT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CATATAGCGATCGCGG	ref_903_negative	6	7	5	3	13	2	11	2	7	0
GCTATAGGGCACAATT	ref_903_negative	547	40	679	555	50	525	59	572	34	536
TGGCGCATGCAGTATG	ref_903_negative	1316	91	1622	1338	103	1300	115	1190	102	1121
TAACCGTTCACTGGCT	ref_903_negative	481	38	617	425	44	438	44	413	30	428
GGTCTGACCGCGTATT	ref_903_negative	1475	124	1713	1512	134	1278	127	1371	111	1280
CCGCTAGGCGTTTGGA	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TACGTCGGTTCGTTGC	ref_903_negative	1468	108	1619	1404	116	1370	142	1343	132	1302
GAACTTACCTGCTATC	ref_903_negative	31	20	46	40	33	48	30	31	28	31
GCCCACACTTGTTTGT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TGCACAACGGTGTACT	ref_903_negative	0	0	2	1	0	3	0	4	0	0
CCCCGACAGCCATCCG	ref_903_negative	172	20	214	187	11	166	21	177	18	147
CTCGGTACTAACCTGA	ref_903_negative	315	31	367	316	30	307	36	303	43	255
TTGCTCATCCTAGAAT	ref_903_negative	367	24	397	368	32	311	43	309	32	317
GTCATTCTCTCTCGTA	ref_903_negative	1088	107	1168	1144	102	1027	105	1002	90	984
TTAGTTAATGGGCGAC	ref_903_negative	2436	165	2972	2448	188	2303	191	2326	169	2235
TTGCATCGGGTCACCT	ref_903_negative	2550	204	3235	2832	223	2554	219	2641	201	2275
TCATTAGCCCGCCCTA	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TCCCGCGGCGAATAGT	ref_903_negative	135	26	163	145	45	136	41	145	37	134
CTTGCGATATTTCCGT	ref_903_negative	149	12	163	172	12	136	21	145	12	159
CTCGGCTAATTATTGG	ref_903_negative	359	17	389	342	26	372	22	330	31	308
TCATTAGCCCGACCTA	ref_903_negative	406	59	569	509	74	478	37	443	71	405
AGTGTTTCATACCTCC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TATCAGATTGACCATC	ref_903_negative	960	75	1134	1081	80	914	97	1019	83	902
GGAACATCTTGTGTTA	ref_903_negative	0	0	0	1	0	0	0	0	0	0
CTCAATCACGCATTGG	ref_903_negative	431	28	542	501	38	415	35	416	34	412
TGGCTCCGGAGTCCGG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TTGCTGGTATGGAGTT	ref_903_negative	6894	636	8201	6852	510	6810	600	5159	636	5693
GGGGTACGCCAGAAAT	ref_903_negative	507	56	664	600	57	508	45	565	50	520
TATAAAAAGCCTGTAA	ref_903_negative	737	60	922	767	51	689	73	659	61	692
CAGAGCATTCTGGGCT	ref_903_negative	274	34	319	280	29	255	30	241	26	219
CGCGCCGGCTGACACC	ref_903_negative	156	86	199	179	87	140	74	139	67	141
GCTTTCTAGCCTTAAG	ref_903_negative	3234	286	3905	3338	311	3160	295	3132	303	2896
TAATTGTGCTCTTTGC	ref_903_negative	982	72	1199	1048	84	988	78	969	73	844
TTAGGTGTTCAGTCCC	ref_903_negative	260	16	276	242	17	239	19	216	10	243
TTCCTGATTTTCGGGT	ref_903_negative	2499	187	3009	2633	202	2334	212	2273	188	2207
GTGAGGTCTTAAGCAC	ref_903_negative	897	67	1134	890	53	933	78	837	80	728
TTGTGAAATAGTCCAC	ref_903_negative	631	64	734	705	46	629	41	555	61	567
CTCCTGGTCCCTTGGG	ref_903_negative	589	50	683	596	64	480	56	568	55	567
TAATCAACTGTTACAA	ref_903_negative	2099	146	2424	2064	142	1962	190	1886	194	1710
ACACCTTCCAAGTGCC	ref_903_negative	172	18	153	155	18	154	19	114	28	143
GCATGCGTTTCACGCC	ref_903_negative	161	18	201	176	7	127	12	134	10	165
TTGGCTTCAGATCGAG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CAGCGAATAATTACTA	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TAGCATTGTTGAAGAC	ref_903_negative	1283	117	1562	1492	129	1296	137	1270	114	1141
GGCTATTCGGCCTCCT	ref_903_negative	598	54	694	598	44	550	50	578	61	558
CAGTTGGAGATTTCGT	ref_903_negative	439	47	551	520	43	423	54	451	47	387
TTCCAGTCATAGGCTC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GGGCTGCTCGCTATTT	ref_903_negative	1265	116	1668	1471	131	1325	143	1357	126	1274
GGTCTGCGACGAGATG	ref_903_negative	47	5	78	53	1	47	3	45	6	46
TGCTTAACACTTAAAC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TGAGGCGCCGCGAGTG	ref_903_negative	649	74	802	814	62	632	69	670	53	598
ATATCGGTACCTCTCG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GGGACACGCAGCTTGG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CTACTCCTTTCGGCCG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TGCGCTCATAATTTTC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GTTTCTGCAGGACACC	ref_903_negative	570	52	739	609	44	578	47	539	54	562
TAAAAGTCAATTTTAC	ref_903_negative	26	2	37	30	2	29	3	28	1	39
GCCATCACTGATTGTA	ref_903_negative	273	20	331	343	24	252	18	283	33	234
CTTTTGGATTGGGATC	ref_903_negative	354	28	393	374	24	294	31	322	36	307
TGCGATAGATCTTCTG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TTGTTTAGAATGCCGT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GTAGGGGTCTCTACTA	ref_903_negative	8	0	12	13	0	9	1	7	1	14
GCGCTGCAGCACTTGA	ref_903_negative	0	0	0	0	0	0	0	0	0	0
GCGTGGGTCGACGTAG	ref_903_negative	235	50	306	281	96	247	63	261	89	247
GTGGTCAACTTTTTGT	ref_903_negative	787	70	973	895	70	744	83	818	98	646
CGTCATGTAGTTAGCG	ref_903_negative	629	57	746	674	54	635	50	600	47	543
GGTCCGATAGCGTAAT	ref_903_negative	2720	199	3278	2795	245	2562	274	2776	203	2551
TCGGGCAAATCTCGTG	ref_903_negative	382	40	483	364	34	361	36	334	36	337
ATTGCTAGGATTAAGG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CTTCACTGGTGATACT	ref_903_negative	1056	97	1406	1107	124	992	111	1051	123	957
GTATTCCGTGTAGATT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
AGGGGACATTTTCTCG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
TGATGATTTTGGCATT	ref_903_negative	1312	110	1631	1316	107	1307	126	1241	138	1113
TGGCTTTTTTCGTTGC	ref_903_negative	754	65	917	844	68	693	53	767	57	681
TCTGCTGCGCCACTTT	ref_903_negative	6334	555	7891	7088	527	6226	538	6455	543	6048
TCTAACAGCTGGTCTT	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CCCGTGCTTAACCTAT	ref_903_negative	8449	666	10128	8993	675	8639	710	7968	705	7615
CCATGTAGGCTGGGCG	ref_903_negative	0	0	0	0	0	0	0	0	0	0
CCCTACAGAACAGGTT	ref_903_negative	381	31	358	369	45	320	42	381	44	296
CATTCGCGCCCTGCCG	ref_903_negative	276	23	338	257	24	272	18	259	23	273
AAGTGTGTTTACGTTT	ref_903_negative	220	27	278	253	33	249	32	256	29	216
CTGCCGGGGCTCTCAC	ref_903_negative	184	18	229	188	20	190	24	169	15	139
CTAGGATTCAGTTCGT	ref_903_negative	716	83	849	752	73	708	70	677	60	690
CTCTGCTTTCATCTGT	ref_903_negative	2908	273	3468	3073	253	2788	257	2764	245	2446
CTGCGTTTGTTACCCA	ref_903_negative	663	55	818	645	54	626	53	606	48	550
GTTCCGAGGTTTCCTT	ref_903_negative	319	19	427	384	22	317	21	337	34	273
AGCCGTGCAGAGAGAC	ref_903_negative	18	17	34	33	24	16	23	29	35	16
CTTGTCGAAATTACTT	ref_903_negative	1958	134	2138	1934	180	1632	196	1729	178	1738
AATTTAAAGGTACCTA	ref_903_negative	0	0	0	0	0	0	0	0	0	0
AATCCTTCTCCGTATC	ref_903_negative	0	0	0	0	0	0	0	0	0	0
ATTGCCCGACCCTCGA	ref_1720_upstream	16	12	21	15	16	16	17	11	18	6
TCTTACGCTCAAGATC	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
AGTAATCCTCGGTGGG	ref_1720_upstream	54	77	93	85	78	62	84	73	73	70
GTTGCCGCCCTGACTC	ref_1720_upstream	22	13	36	25	18	26	24	13	26	15
TCTATGCTCTTAGTTT	ref_1720_upstream	48	41	60	47	55	33	52	37	42	45
GCGCACATTATTCTTT	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
CACATCGAACGCCATC	ref_1720_upstream	58	42	61	56	53	66	50	61	67	47
TACCTACAATCAGCGG	ref_1720_upstream	11	11	19	13	15	14	15	13	13	8
ATTGAGCGCCAAGGGG	ref_1720_upstream	5	7	5	30	18	6	8	8	6	8
TTTACGCGGCGGTACA	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
GCAATCGTAGGTAAAT	ref_1720_upstream	22	10	27	20	8	34	5	11	5	16
GGTTTGTTAGTGTTTT	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
GACTAGTTACCGGTTC	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
GCGCATTGGATATAGC	ref_1720_upstream	96	115	95	90	105	96	114	99	123	63
GACCCATCCCTCCTGT	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTGCTAAACATTA	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
CTACCGTATTGGTCTC	ref_1720_upstream	13	14	20	10	14	4	15	13	8	7
TCGATAATACATAGTC	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAACATAGTCGCA	ref_1720_upstream	29	21	34	19	28	12	29	17	19	19
GCTTAGAGGGGGAATC	ref_1720_upstream	27	39	34	46	30	29	46	17	28	25
CGTGAAGCCAGGCGGA	ref_1720_upstream	416	422	495	455	459	393	459	376	470	357
TTGCATTGCGACGCCT	ref_1720_upstream	68	91	107	105	85	83	81	75	101	77
CCATTTCCGTTTCTCG	ref_1720_upstream	43	59	52	49	45	57	39	52	56	30
TTAGTGCCTGTAGGTG	ref_1720_upstream	26	31	30	41	34	40	51	39	38	32
GTTCTTTCCGATTGTG	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
ACATTGTAGCGATAAC	ref_1720_upstream	16	16	21	21	14	19	13	16	15	9
AATTGAAGTTGTCCTC	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
CATGATCGAACCCTTT	ref_1720_upstream	50	50	61	45	42	50	41	54	51	47
CATGAAGCCAGGCGGA	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
CTCCACTCCGTTAATG	ref_1720_upstream	9	12	5	10	10	8	19	6	16	6
CATCCCTCGTTAACCT	ref_1720_upstream	20	23	23	13	26	19	32	23	19	23
GGGACTTCTATGCTTC	ref_1720_upstream	17	18	25	18	21	16	29	24	23	29
TTGTGTCCTGTATCCC	ref_1720_upstream	8	16	14	5	9	9	13	7	12	6
ACAGAGCCGCGACGTT	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
TACCCTCTGCCTCCCG	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGCCCCTCTGCTC	ref_1720_upstream	18	24	35	19	19	26	16	19	26	18
ATCAATGTGTGCTTTG	ref_1720_upstream	19	28	22	19	25	24	32	24	27	17
GCTCAGGGTGCTCTTT	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
TGGATTGCTTCGCTCT	ref_1720_upstream	29	28	59	51	49	29	29	38	36	35
TATTACATTAAGCGAA	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAACTTTATCGAC	ref_1720_upstream	45	53	50	39	48	45	49	45	59	34
TAGGTGATCAGATTCG	ref_1720_upstream	27	28	35	17	30	45	32	26	31	28
TGTGTGCTCCGCTGTT	ref_1720_upstream	4	11	4	5	0	6	4	5	4	5
CTCTGCGGAGCTTGGA	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTATTTAATCGAC	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGGCTGAGGTTCG	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAGGTGTCATCCC	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGTTTATGGTGTT	ref_1720_upstream	56	84	67	67	55	60	57	56	64	50
CTTAAGCTTTTCGAGC	ref_1720_upstream	104	108	153	136	127	97	115	108	102	109
ATATAGGTGTCCCATG	ref_1720_upstream	39	27	42	35	34	29	31	28	28	23
CGAACCCTGGACACAG	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
TAGACAACTTAAGGAA	ref_1720_upstream	12	17	11	14	13	12	6	9	13	11
TTACCACCAAAGCCGT	ref_1720_upstream	5	8	14	5	11	12	12	6	12	12
TGTCACTTTCACCGCA	ref_1720_upstream	28	29	35	37	43	35	62	30	37	37
TCAGCCGTTCTCGAGT	ref_1720_upstream	0	0	0	0	0	0	0	0	0	0
CTTATTAGGGTTACAA	ref_1720_upstream	25	33	26	23	30	18	33	20	47	18
ACCGGAGGCTGTCTCA	alt_3746_RC	7	14	3	16	23	11	20	7	18	12
TTGTAATGCGTACGGT	ref_3746_RC	68	129	93	85	137	71	172	80	116	81
GGCACGCGAGCTGGGG	ref_3746_RC	5	3	5	5	7	8	4	3	6	8
GGTCGATCTCAGAGGG	ref_3746_RC	17	27	12	7	43	15	33	13	31	12
CTCGGCGCAACCCTGG	ref_3746_RC	2	7	3	2	9	3	7	2	12	1
ATCTTGACTTAGCTCC	ref_3746_RC	64	90	62	60	71	59	104	47	94	50
TAGGTCCATGTCTTCT	ref_3746_RC	59	87	75	54	58	52	71	56	76	57
ACTTTCTCCCGGCCGG	alt_3746_RC	19	94	35	35	87	41	89	19	81	18
TGTCTGTACCAGCTAG	ref_3746_RC	3	2	3	2	3	3	2	0	7	1
GCATTAGGCCAGTATA	ref_3746_RC	8	18	9	15	16	12	22	7	20	17
GTTTCATTACCTCGCT	ref_3746_RC	14	32	20	24	29	18	40	19	24	19
CGAAATTTTGCTTGAT	ref_3746_RC	139	180	153	111	231	107	191	116	192	106
AATTGACTTCCGGAGC	ref_3746_RC	18	20	23	14	17	10	22	10	28	10
AGCATCCGATTGGCTG	ref_3746_RC	15	23	8	14	17	11	22	12	22	19
CGGCCGCCTACCTTTT	ref_3746_RC	1	9	7	4	8	2	6	1	10	0
TTAGTAGCTTTTCCTT	ref_3746_RC	6	23	15	16	19	13	17	15	13	11
ATGTGCGGTCGCTTTA	ref_3746_RC	16	32	22	24	33	21	32	21	33	19
TAGCGTGACACTAAAT	ref_3746_RC	49	70	52	48	70	61	74	34	50	34
CACTACGTTTGTAAGG	ref_3746_RC	6	5	6	4	8	5	5	7	8	9
GAGCCGGTTAGACCCT	ref_3746_RC	51	52	35	36	55	38	46	41	55	41
TATCGATGGTCAACGG	ref_3746_RC	40	79	58	50	75	29	59	45	66	44
AAATTTACCGCGGGAA	alt_3746_RC	21	35	14	25	34	22	30	20	42	23
TCCTATTAGGTGTTAT	ref_3746_RC	22	35	30	22	30	16	30	19	34	18
AAAAGAATTACGCAGG	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
ATCTCTCCGAGGAGTG	ref_3746_RC	58	98	74	66	101	63	93	58	112	51
CATATATAGTACCTTG	ref_3746_RC	59	101	66	59	89	43	91	48	92	48
TTTGTTATACCGCTAT	ref_3746_RC	35	50	40	37	51	22	48	37	42	28
CCCGCATGACGTCAAC	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
AAATCGTATAGGAGTA	ref_3746_RC	7	8	3	5	5	4	19	3	7	3
TTCTTTCTTTCGTCTA	ref_3746_RC	33	66	44	29	51	27	67	19	69	25
TAATAATTGGTGATCC	ref_3746_RC	62	71	68	58	84	46	96	47	108	54
CAATTGGCGAGCTCGC	ref_3746_RC	71	145	95	71	112	84	142	82	143	87
CGAACTGGATTTTATT	ref_3746_RC	182	254	221	155	272	173	260	149	258	158
ATTCACTTTTACAATG	ref_3746_RC	9	9	10	4	14	4	13	8	10	13
ATCCCGGAGCATACCT	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
ATGATCTAGTACTTAT	ref_3746_RC	44	52	47	42	68	37	67	31	72	27
AAATGTGAGTGGCTCT	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
GGGACTGTCGGCAACG	alt_3746_RC	160	215	220	174	255	177	231	135	256	166
GATTTTGCTATACTAC	ref_3746_RC	54	78	59	46	90	34	91	32	73	41
ATTCGTAGCTTGTTTC	ref_3746_RC	51	88	65	56	70	46	82	41	88	60
TTTACGCCTACTACGT	ref_3746_RC	3	17	10	11	14	12	20	9	15	7
ACTAGCACTTTTAGGC	ref_3746_RC	13	23	18	16	17	14	36	14	24	6
TTGGATAGGTCCAGAA	ref_3746_RC	20	27	13	15	9	18	25	8	29	13
AACGTTCAGTGGCCGA	ref_3746_RC	28	31	25	22	41	21	42	21	27	24
CTCCGCACAACTACTA	ref_3746_RC	71	103	93	68	75	62	106	69	87	67
GCCCGGCCCGGGAGAA	ref_3746_RC	19	18	20	21	24	16	15	28	32	21
TTGCCCATCGACGAGT	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
ACTAGGGTGTGGTTCA	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
ATCTTTTTTGAAGATG	ref_3746_RC	17	23	13	12	18	10	24	16	16	13
TCTCCGTCTAGTGTCG	alt_3746_RC	4	17	11	9	5	3	12	1	12	4
GCGTGTCCTTTCGCTC	ref_3746_RC	6	4	10	3	10	5	6	6	6	2
CTTGATCAACCCAATG	ref_3746_RC	63	83	63	55	72	39	76	37	85	55
GGTTGTCCGCAATACC	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
TATGTTTCACCCTGGG	alt_3746_RC	72	114	88	73	105	70	134	64	99	49
TCGTATTGCAATTTAC	ref_3746_RC	35	53	36	32	44	23	59	22	56	31
ACAAGGTACATGTGTC	ref_3746_RC	5	6	16	3	8	3	11	10	7	7
ATAGAAGTCTGGATAT	ref_3746_RC	12	28	17	14	16	16	31	11	31	12
ACTGTAGTTTGGTACT	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
GGTTGGCCTATAAGCG	ref_3746_RC	54	62	48	44	57	41	67	39	69	34
AATTCGATCGACGCAC	ref_3746_RC	6	21	13	8	13	10	33	13	9	9
CAGACATGGGAAACTC	ref_3746_RC	42	75	62	45	94	64	77	46	100	37
CTTCTTTCTCTATTCC	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
GTCGTCCCGCCTCATT	ref_3746_RC	30	31	27	21	42	15	41	17	37	23
GTCTTATTCGGTACTT	ref_3746_RC	13	8	7	7	22	5	13	8	24	8
ACGCTCAGCTGGTTCG	ref_3746_RC	8	6	4	2	6	6	10	4	7	3
GCCGCCGAAGCTTTTG	ref_3746_RC	64	180	111	69	191	72	206	78	205	63
AAATCCAATCGTTCAA	ref_3746_RC	27	34	33	34	36	31	41	25	56	26
TGTACAGTGCCCCGAA	ref_3746_RC	7	12	8	4	21	6	14	2	18	6
AGTATCGGTAATTTGT	ref_3746_RC	43	77	54	48	56	46	65	42	83	35
CTAAAGTTAGTAGTTT	ref_3746_RC	6	3	4	5	5	7	7	5	1	2
ATGTCTGAAGGATTAA	ref_3746_RC	0	0	0	0	0	0	0	0	0	0
CAGACACCCGGCCATG	ref_3746_RC	2	6	2	1	3	1	3	2	0	0
TGTGACAACTCGTACT	ref_3746_RC	22	31	36	28	49	17	44	18	42	17
ACCTGATGGTTTCCCT	ref_3746_RC	5	10	8	5	10	5	11	4	5	4
GACCTAATTCGCGAAT	alt_5762_new	16	52	26	25	58	23	63	18	51	21
TTTGTGCTTTCTGTGG	alt_5762_new	55	165	72	86	152	61	129	81	157	74
TTGGATGATTATCTAC	alt_5762_new	0	4	5	0	3	0	4	6	5	0
AGATCTAGGTGGGTGA	alt_5762_new	30	59	40	31	67	33	53	24	70	23
ACGCTCGATGTGTGGG	alt_5762_new	19	33	18	16	47	16	42	12	26	12
TCTTTTCTTAAACCTA	alt_5762_new	23	18	14	14	28	18	26	8	35	15
CGACTGGGCAAATCAG	alt_5762_new	45	124	56	47	127	51	167	62	126	46
AACGGCTTTTGTACCG	alt_5762_new	0	0	0	0	0	0	0	0	0	0
ACGTGCAAAGTGCGAA	alt_5762_new	0	0	0	0	0	0	0	0	0	0
ACCTCCGTCACTGTCT	alt_5762_new	29	67	26	34	73	27	58	31	55	28
TATCTCCGTGTTGGTT	alt_5762_new	0	0	0	0	0	0	0	0	0	0
CATGTAGTAGAAGCCT	alt_5762_new	0	0	0	0	0	0	0	0	0	0
GATTTGTGGGCCCACA	alt_5762_new	135	209	158	114	219	130	221	121	259	107
CCACCTGCGTTTTACA	alt_5762_new	18	34	18	15	29	17	31	15	45	23
ACAAAGATTCGCGTTC	alt_5762_new	19	20	14	14	35	17	32	23	42	18
AGTTTTCTTTTGCAAC	alt_5762_new	29	84	44	28	91	51	88	44	73	46
TTTTTTTATCCTCTTA	alt_5762_new	59	107	79	45	84	41	77	43	106	51
TTGTATTATCCGAATA	alt_5762_new	8	18	12	7	18	10	19	6	11	2
GAGCCTCGAGATTTAG	alt_5762_new	10	24	13	10	23	6	34	18	21	20
TGAATATAGGAATTTT	alt_5762_new	7	14	10	8	16	11	20	10	12	5
TGTTAGAACAATTGCT	alt_5762_new	0	0	0	0	0	0	0	0	0	0
ACTCTCAGAGTCTGCG	alt_5762_new	1	1	3	0	1	0	0	0	0	1
TATGCCTCTTTCGGAC	alt_5762_new	0	0	0	0	0	0	0	0	0	0
ATAAAGGATTGGGGTC	alt_5762_new	31	57	34	42	51	36	66	35	63	21
GACTTCGATTCAGCTG	alt_5762_new	24	35	23	21	36	14	60	23	50	24
CCTCGGTGTCTTGTAA	alt_5762_new	29	42	9	15	38	9	49	13	37	16
CTCTGGGGCGATGGCC	alt_5762_new	0	0	0	0	0	0	0	0	0	0
CCATCCGGACCCCGGG	alt_5762_new	11	38	34	29	50	14	60	18	60	17
GACACCACAAACGGGG	alt_5762_new	12	17	15	13	15	13	29	11	22	11
CTATCCTAGTCTAGTT	alt_5762_new	0	0	0	0	0	0	0	0	0	0
TATACGTCTCTGGTCT	alt_5762_new	42	84	42	37	60	36	59	27	74	33
ACCGGCACTCACCACG	alt_5762_new	7	16	7	5	18	4	19	6	29	4
GTCTCCTTGGAAGATC	alt_5762_new	65	129	88	51	144	78	132	59	147	63
ATTTAGGCTGTTTGGA	alt_5762_new	2	4	8	1	3	4	13	1	12	5
GCTTATGGTGTACGCC	alt_5762_new	62	105	56	40	116	48	96	74	123	51
CCTTGGCGTTGGCTAA	alt_5762_new	17	25	25	12	35	15	37	12	35	7
CTCGATCGGTTTACCC	alt_5762_new	25	46	48	27	50	34	56	45	67	34
TTGGATTGCGGTTGTG	alt_5762_new	0	0	0	0	0	0	0	0	0	0
AGCGTAGTGCTAAAGA	alt_5762_new	16	37	33	22	25	32	42	18	45	17
CGTTTTGGGAGTTTTT	alt_5762_new	17	32	25	18	30	8	28	13	26	18
TACGCATAATTCAGAC	alt_5762_new	51	95	71	51	96	56	108	35	102	35
CAATAAGTTGGAGATA	alt_5762_new	22	31	30	15	46	21	41	20	51	13
TTACGGTAGCGGATTT	alt_5762_new	5	14	17	9	14	7	19	11	12	7
GGGGTGATTCCATCGC	alt_5762_new	26	39	28	33	50	27	60	30	70	22
CCCCGCGGCTAGGGCT	alt_5762_new	0	0	0	0	0	0	0	0	0	0
TCCATAGACGTGAAAA	alt_5762_new	5	11	5	11	13	4	16	6	15	8
AGTCGTTTCAGCATTA	alt_5762_new	19	37	26	15	41	18	42	17	39	13
CCAGACGACCTATTCG	alt_5762_new	20	28	25	19	35	16	40	18	38	25
CTTTGTAGCATCCGGG	alt_5762_new	1	2	1	1	3	1	3	1	4	1
GCATTCATATGTACGA	alt_5762_new	13	39	12	25	32	8	28	13	41	16
GATTTGTGGGCCCTCA	alt_5762_new	0	0	0	0	0	0	0	0	0	0
CAGGTGTAACTTGAAG	alt_5762_new	12	16	18	12	22	10	29	7	28	17
AGCTTTCTGATTCTGA	alt_5762_new	10	9	11	6	13	5	13	9	17	13
GAAAGTCTGGGTCTTA	alt_5762_new	41	100	60	74	98	35	114	41	96	48
ACGTTGGGTTTCGTCT	alt_5762_new	33	85	35	29	58	30	72	25	74	35
TCGCCAACTACTATGA	alt_5762_new	0	0	0	0	0	0	0	0	0	0
AGAAGGGCGGTATTGT	alt_5762_new	8	34	16	11	26	11	22	16	32	9
ACTACTAAGGTGGTCA	alt_5762_new	0	0	0	0	0	0	0	0	0	0
CCGATTGGCACCGCGT	alt_5762_new	12	30	16	12	18	25	39	5	28	10
GGGGTGCAATCTGGTG	alt_5762_new	13	32	26	13	52	16	42	20	30	13
TTTTGCAGCGGGAACT	alt_5762_new	8	24	7	1	19	11	26	4	26	19
TTCTAATTTTCAGAGC	alt_5762_new	11	19	6	8	16	6	23	6	15	10
GTAGGTTATGGATCAT	alt_5762_new	15	32	23	22	19	19	45	15	37	14
CTTCGTAAATCTTGAT	alt_5762_new	15	31	12	12	24	8	22	10	25	14
GGGACGGTTGTCGTGG	alt_5762_new	0	0	0	0	0	0	0	0	0	0
GGGCAGTACCTGACCT	alt_5762_new	25	49	30	23	46	15	44	30	51	21
GATTCCCTGGAACTCC	alt_5762_new	10	19	5	20	18	12	22	9	19	12
TTCCCACATGTGCGAA	alt_5762_new	33	60	27	30	67	21	61	31	79	29
GGCGCTGGCACTCCTC	alt_5762_new	6	12	3	5	8	4	10	8	5	3
GGATAATCTGTTAATT	alt_5762_new	29	38	24	21	41	17	43	21	33	19
TTAAGGCATGCGTCCT	alt_5762_new	0	1	0	0	0	0	0	1	2	0
CATCACCACACGATCA	alt_5762_new	10	17	15	8	14	11	23	5	15	9
TTGATGTATTTTAGGG	alt_5762_new	68	141	105	76	177	81	182	89	193	75
ATTACCGTTTACAGGG	alt_5762_new	3	3	6	0	7	1	0	0	4	3
TTCAATTATCGAGCCT	alt_5762_new	1	3	0	1	4	1	9	3	5	0
AAGCGCTTCCGGCAAT	alt_5762_new	0	0	0	0	0	0	0	0	0	0
ACTAGTGCTCCACGCG	alt_5762_new	0	0	0	0	0	0	0	0	0	0
AGTGTTACAGGGTTTT	alt_5762_new	24	59	26	25	52	18	49	28	64	15
AGTCGCGGCCCCGATT	alt_5762_new	2	9	7	4	9	7	15	4	18	7
TTTCGTCCATGGTCAC	alt_5762_new	40	50	30	30	63	25	74	30	54	15
TATTGCATCAGCGTCT	alt_5762_new	65	106	64	65	122	77	121	56	112	39
GGAGTCGTTCATCCAC	alt_5762_new	0	0	0	0	0	0	0	0	0	0
TGTCGTGCCCGAGGAT	ref_1514_upstream	70	53	64	70	68	66	69	64	71	46
ACCCGAGAGTGCTTTG	ref_1514_upstream	130	135	142	125	146	124	147	95	173	109
CGAGACTCATTGTGGT	ref_1514_upstream	6	12	7	3	7	4	6	11	8	5
ATTGGGGTGCAACCCA	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGACTCAGCTTGG	ref_1514_upstream	28	26	28	30	48	21	26	18	22	22
TGATGTCCATTTTACG	ref_1514_upstream	5	6	6	3	4	5	5	3	5	2
CATAAGTGGAATCCGG	ref_1514_upstream	57	50	58	51	43	46	38	54	54	46
GTGATCGCTGACATAT	ref_1514_upstream	31	46	50	43	29	33	36	50	48	36
CATAGCGACATAGTTC	ref_1514_upstream	55	48	45	45	56	45	71	27	71	19
TTTGGCAGTCTTGCCT	ref_1514_upstream	11	16	12	18	22	7	24	9	13	11
GGTTCAATAACTGTTT	ref_1514_upstream	25	36	26	20	20	16	21	18	32	24
TATGGATAATGCCTCG	ref_1514_upstream	59	55	55	52	56	46	81	51	66	46
TCGAGCCGCCGTGTCT	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
CGAATGTACTCGCTCT	alt_1514_upstream	41	53	57	53	65	46	51	47	54	34
CTTAGGTCAGCACGGG	ref_1514_upstream	6	10	8	3	8	4	5	8	10	7
CTAAATTGACCCAATC	ref_1514_upstream	9	13	10	9	9	10	13	9	11	12
ACTAGCGTTCCTTTCA	ref_1514_upstream	58	69	72	66	69	58	72	52	60	57
TTAGTTATGTACACCA	ref_1514_upstream	38	44	58	39	45	44	50	41	44	27
TCACCCAAGACGCAGC	ref_1514_upstream	10	17	14	17	16	30	17	20	33	9
ACTTTAGTTTGTCTCT	ref_1514_upstream	25	42	34	38	38	46	62	43	33	33
TTTATTCAGGCCGTGG	ref_1514_upstream	25	19	29	14	23	23	23	23	24	11
ATGATCCATGTTCGGT	ref_1514_upstream	35	37	49	25	37	29	29	49	41	26
TTAACCCGAACAACTT	ref_1514_upstream	13	36	24	21	29	26	24	21	24	17
TTGTCTCGTCCTCATA	ref_1514_upstream	52	72	67	43	79	58	80	48	82	40
ACCACAGCAATGCCCC	ref_1514_upstream	33	47	47	29	43	29	54	21	49	21
CTGTATTATAGGATGC	ref_1514_upstream	27	40	29	25	33	20	25	22	29	19
TTTGGGATGTTGAATC	ref_1514_upstream	250	296	253	198	226	223	250	244	298	238
TGGTTCTTGACATCGA	ref_1514_upstream	32	55	60	53	75	49	63	50	71	34
GTATTTCAGGACGTCA	ref_1514_upstream	17	18	14	14	18	18	21	16	15	8
ACTATCTCTAATCGGT	ref_1514_upstream	81	68	76	58	96	73	86	63	90	63
GGTTCCGTACCAGATC	ref_1514_upstream	0	5	6	9	4	3	6	3	4	0
ACACTCCTCTTTCTTT	ref_1514_upstream	3	3	6	0	17	2	9	2	13	2
CACCGGCACCTACTGA	ref_1514_upstream	20	36	21	23	42	28	34	23	33	21
TTCGTCACTTAGTCCA	ref_1514_upstream	8	11	22	11	10	19	16	15	15	13
TTACTGCCTGAATTTA	alt_1514_upstream	110	128	120	120	101	85	123	119	106	91
TAGCAGGGGCTTTGAT	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
CGGTATTTGTATGCGC	ref_1514_upstream	3	9	14	7	9	4	10	15	12	9
ATTACCTGTCCGCGGC	ref_1514_upstream	106	130	102	113	140	96	140	95	142	92
TACCATTTTGGTCGAC	ref_1514_upstream	22	56	33	31	46	22	41	25	40	38
ACCTCCAGCTCTATTT	ref_1514_upstream	0	0	0	0	0	0	0	0	0	3
TCCCTTACCATTTATA	ref_1514_upstream	14	12	16	11	12	13	19	11	21	9
TTCAGGCAATCAAATA	ref_1514_upstream	120	171	159	142	187	127	158	130	207	127
GAGATAAGGAACCTCG	ref_1514_upstream	4	5	6	6	0	3	6	6	5	3
GTCTAATATGATATAC	ref_1514_upstream	7	15	14	11	7	13	12	10	8	9
TTTGTTATATAAGATT	ref_1514_upstream	5	11	8	11	11	4	20	8	8	7
TTTCTAATCATGAATA	ref_1514_upstream	27	18	24	19	28	10	20	17	29	25
CAGATCGCTTGTCGAG	ref_1514_upstream	23	15	19	18	14	11	20	14	16	15
GCAAACTCTGGAATAT	ref_1514_upstream	16	27	37	21	25	12	25	16	22	15
CCCCTTATTGAAGCTT	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGTCTGTAGTCAC	ref_1514_upstream	18	14	23	19	6	14	19	18	25	16
CAGCAGCCTGTTAACA	ref_1514_upstream	4	10	8	5	7	3	9	2	18	6
CACTCTCCCTATGCCC	alt_1514_upstream	8	65	17	10	61	7	45	13	62	5
CCGAGTCAAGCCGTCC	ref_1514_upstream	19	11	17	8	13	20	17	20	16	15
AGGCCTCTTCATAATA	ref_1514_upstream	95	103	96	101	76	94	97	81	94	90
ACTGAGGCAGTCTTGA	ref_1514_upstream	23	38	31	26	35	26	29	33	32	21
GGAGGCACTTTATGGT	ref_1514_upstream	33	60	44	35	64	42	56	62	57	50
AGGTTTCGGTCTCTGG	ref_1514_upstream	11	4	12	19	10	6	17	9	17	10
GACATGATGGGAATGG	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCATCACATCGAA	ref_1514_upstream	3	2	10	3	3	0	3	4	3	3
GTAAAACAGACATCTT	ref_1514_upstream	21	27	14	14	28	26	32	22	34	20
TTGGGAAGGTTTCTCA	ref_1514_upstream	97	120	131	116	133	85	141	95	127	112
GTTGCGGGAACGACTT	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTGGTGTGGCACG	ref_1514_upstream	36	49	43	35	57	40	37	33	45	34
CATCCCCGAACGGTTA	ref_1514_upstream	31	48	34	37	63	27	58	27	70	26
CTTCTGCTTATTGTTT	ref_1514_upstream	8	19	16	7	10	7	14	8	17	11
AACGAGTAACTAATGA	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTCTAGTCAAGG	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTAAGTCAATCAG	ref_1514_upstream	44	56	37	51	36	37	55	33	53	36
CCTTCAACAACCATGC	ref_1514_upstream	13	35	39	19	39	24	41	38	36	21
GGCTTCCCCTAAATAC	ref_1514_upstream	38	59	44	30	55	38	70	28	65	35
GGTCGCCTTGTTTATT	ref_1514_upstream	54	66	53	54	90	28	81	38	79	51
CTTCCTGTACGTTAGT	ref_1514_upstream	29	29	36	24	51	20	35	25	37	14
TGGTCAATCCTAGACC	ref_1514_upstream	12	19	16	12	10	11	12	9	23	8
ACACTTTTTTCGGTAG	ref_1514_upstream	92	92	116	115	102	122	101	115	135	95
TATATCGCCACAGTTT	ref_1514_upstream	120	153	164	136	172	131	157	115	175	113
AGTTTTATTATTTGTG	ref_1514_upstream	169	264	239	237	227	197	274	188	282	197
CGCGGCTTTCCCGCCC	ref_1514_upstream	0	0	0	0	0	0	0	0	0	0
TACGTTAAGTTGGTAC	ref_1514_upstream	12	5	8	6	7	6	11	1	6	1
TTGCGTTCACGTTCGT	alt_1514_upstream	88	96	123	117	104	94	105	71	123	71
TGGAATCTCCTGCTTG	ref_1514_upstream	1	4	2	5	1	5	4	3	2	1
ACACTTGAGACATCCA	ref_1514_upstream	145	140	178	137	145	123	142	131	141	114
GCCGCGGCGGGAATCC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCAGACATCGAAC	alt_1261_upstream	17	19	32	22	31	24	26	16	35	10
AGACTACCTTTGGGAT	alt_1261_upstream	160	169	180	144	169	138	189	138	173	160
TCAGGTGGAACCCCGG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGCTATATAACG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGTTCTACGGGC	alt_1261_upstream	7	19	16	11	17	9	11	10	14	13
TACTCGGTTAACTGAC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTTTCCGTGCAAG	alt_1261_upstream	15	15	12	12	12	8	11	18	16	11
TACAGGTTAAGCAAAC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCACTTCTGGGG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTTACACCCAGCATAA	alt_1261_upstream	8	10	5	5	14	5	16	6	10	8
ACTCCCGTATAAAAGT	alt_1261_upstream	2	14	3	3	11	0	16	1	15	0
TGTGCTGGTACAAAGT	alt_1261_upstream	33	37	54	27	40	32	44	37	43	33
AGTTTGAATGGATTTA	alt_1261_upstream	19	30	23	31	14	16	43	22	28	23
TTGTCAGCGTTGTTAC	alt_1261_upstream	5	11	6	5	5	4	6	8	16	4
CGTCTTTCGTTTGTTT	alt_1261_upstream	22	31	40	39	40	20	25	29	40	12
GTCCTTTGCTCATTCG	alt_1261_upstream	23	23	15	11	16	16	16	14	21	20
AGCGAAAGCCTCCAAA	alt_1261_upstream	7	17	8	13	10	4	16	12	13	6
ACCATCTTTATGTTAT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTGGACCATGTTCCTT	alt_1261_upstream	18	43	30	26	29	27	48	27	48	34
GACCGCCCCAAGGGCG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TAACACCGTTGTCACG	alt_1261_upstream	7	12	13	19	11	9	18	8	20	11
GGCCGGCCCTAGCCTG	alt_1261_upstream	4	9	6	11	5	3	7	10	7	8
AGGGACGTCTATTTAT	alt_1261_upstream	73	89	84	93	73	84	102	77	77	72
TCTTTTGTGCGCCCGC	alt_1261_upstream	3	10	6	7	9	5	8	11	7	4
TTATAGTCTGCAGTGT	alt_1261_upstream	8	2	6	10	8	1	8	3	8	4
CAGGCCACTTTAGGGG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GGAGCTTTGCCCAATG	alt_1261_upstream	9	8	14	2	8	2	8	5	10	16
CGACGTTAAATTTCTT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTGTCTTTACTCG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGATGAATCGGTA	alt_1261_upstream	35	40	36	36	51	32	29	31	40	31
TCGAATTTCATTGCTC	alt_1261_upstream	29	39	41	34	30	38	29	28	30	29
CTTGGTCAACCCGTTG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGGCGATGAGTCT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
ACAGGTAACTTCTCTA	alt_1261_upstream	40	49	48	35	67	36	40	35	52	32
ATAACGAAACTAGGTT	alt_1261_upstream	57	74	72	48	63	68	56	60	78	49
AGGTAGTAATACGTGT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGGCCATCCCGGT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATTTTCTATGGT	alt_1261_upstream	62	98	80	70	83	70	96	81	61	73
GCCTATCATAACGGAT	alt_1261_upstream	1	4	1	1	1	5	3	4	6	2
AAGTTTCCTTTTTGTT	alt_1261_upstream	26	29	26	24	24	35	36	25	37	21
GAGGTGTTATGACCAT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
AATGTAGGATGCATCT	ref_1261_upstream	14	15	21	10	16	20	25	12	13	12
TTAGTGATGAAAGATA	alt_1261_upstream	118	142	151	97	104	111	142	79	137	101
CTCTGGGTGTCTTCTG	alt_1261_upstream	7	8	4	11	6	4	14	4	9	11
AATGCGTTGCAGTGTA	alt_1261_upstream	4	3	3	4	2	4	7	1	3	5
CAGTCTCCCTGGATGA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAGTTGCTATTTT	alt_1261_upstream	31	28	28	20	35	30	27	13	23	32
CCTTTATCGGGTTTGA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTCTCAGGTGGCT	alt_1261_upstream	18	11	11	9	12	11	11	11	9	7
TGCTGGCTTTGTAACG	ref_1261_upstream	264	261	339	274	279	291	318	239	346	223
TTTTCAGGGGGTCCTT	alt_1261_upstream	41	40	45	45	28	36	38	30	56	40
ACGCCGTTGCTTTTTA	alt_1261_upstream	16	25	31	29	45	18	23	23	37	21
GGCATCGGTATATGTG	alt_1261_upstream	9	17	12	8	15	9	21	6	13	8
TGCGATAACTGACTAC	alt_1261_upstream	4	7	2	8	11	3	9	9	11	1
TGTTCACCTGTTCTCA	ref_1261_upstream	53	96	53	68	117	45	103	46	126	51
CAAACTTGTCTGGACC	alt_1261_upstream	87	106	116	91	91	88	110	84	114	96
GGTAAGCGTCGCACCT	alt_1261_upstream	18	22	19	16	23	18	32	14	26	15
CATAAGTGTTACCTAG	alt_1261_upstream	9	12	4	7	10	5	10	4	15	8
GCTCGACGCCAGCTCG	alt_1261_upstream	54	46	58	40	36	55	45	35	43	39
GTATGCTTGTAATTGG	alt_1261_upstream	1	1	0	1	3	5	2	0	4	2
TTTAGATACCTCGATC	alt_1261_upstream	20	27	29	25	28	18	24	18	27	27
TGTGATGGATCACTCC	alt_1261_upstream	24	11	19	7	28	18	21	17	29	9
GAGTGTATAAGGAGGC	alt_1261_upstream	15	23	29	18	30	15	18	11	16	22
TATGTTTGACTAATCG	alt_1261_upstream	4	8	8	6	7	5	11	11	9	13
ATTCCATACACCAGAG	alt_1261_upstream	0	3	1	0	0	1	0	0	1	2
TAATGCGCAGCGCCGG	alt_1261_upstream	28	32	33	27	42	29	37	23	46	26
AGGAATATAATGCATA	ref_1261_upstream	14	6	10	22	19	5	6	13	16	12
CGTGGCCATTGATGCC	alt_1261_upstream	6	21	9	10	19	14	17	12	18	9
AGCCTGTCGAGTTAGT	alt_1261_upstream	15	32	34	19	31	23	33	26	36	12
CTCATGTATAGTACAG	ref_1261_upstream	61	87	97	84	69	58	97	60	103	48
GCATCGATGTGTGCTG	ref_1261_upstream	225	236	277	217	270	226	280	223	308	180
ACTAAGGTTATCACGT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTTGAACTGCCCC	alt_1261_upstream	10	11	8	13	17	9	16	8	17	5
TCTAGCATGTAAGGAT	alt_1261_upstream	15	41	18	23	38	19	37	24	47	23
TAGTATCGGATTTGCT	alt_1261_upstream	5	1	0	0	2	5	2	1	5	6
GCGCGTTACGTCTGAT	alt_1261_upstream	11	10	12	11	14	8	10	16	10	17
TTCTACAGGAAGTTTA	alt_1261_upstream	5	4	7	12	5	7	4	3	6	5
GGCATCCTTCCATTTC	alt_1261_upstream	19	19	14	21	9	11	11	9	21	8
TAGGTACCTTATGCTT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCGAAAGGCCCCTTTC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
AATTTAATTTATTTAA	alt_1261_upstream	0	5	4	9	7	6	8	1	5	7
AGCTTATGGTATCTTA	alt_1261_upstream	77	126	133	101	93	101	125	101	120	93
ACGGCGGTGATTTTAT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCTTATTCTTCCA	alt_1261_upstream	43	68	44	58	66	44	57	52	50	57
AACCCAGTCATAGTAA	alt_1261_upstream	0	4	2	0	2	3	1	0	1	0
CACGGGTTGCCGCTAT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CGTTAAATATAAGTGA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGTGTGACCGCG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
AAATGCCTGAACTATC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTCTGACTTTGTG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTTATACCCTATCCTA	alt_1261_upstream	153	197	209	153	215	125	206	125	212	117
CAACTTTATTTTATAG	alt_1261_upstream	2	6	0	6	1	3	13	1	11	2
AAGATCGAGAGCCCAT	ref_1261_upstream	239	334	359	290	311	272	349	240	372	241
ATAAGAATAGCTCTGT	alt_1261_upstream	45	50	43	35	44	31	47	37	49	31
CCTTTCGATAAGATTT	alt_1261_upstream	5	3	7	4	6	3	5	7	10	1
TCTTTGTCCGAGGTCC	alt_1261_upstream	8	14	5	7	8	4	11	2	7	8
GAATCGCCTATCGTAA	alt_1261_upstream	77	82	92	70	95	78	101	64	99	53
CACTGACTGTTACTCG	alt_1261_upstream	8	13	7	8	12	4	21	13	12	8
TATTCCGATCTAGAGT	alt_1261_upstream	13	8	12	16	9	7	10	7	13	13
TATATACTCACATGAA	alt_1261_upstream	148	278	146	115	316	120	305	99	298	113
ATACAGGCCGCTTTGA	alt_1261_upstream	55	76	89	53	81	70	79	65	90	62
TAACGCTCAGGCGGCC	alt_1261_upstream	35	31	37	20	27	31	43	26	45	38
ATTGCATCATTGTCTT	alt_1261_upstream	190	199	214	164	209	156	193	154	217	143
CGCCCCACATTCAGTT	alt_1261_upstream	0	3	2	0	6	3	2	5	4	1
TCCTCTGCCGGGTTAA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
AGTCCGCTCATAGACC	ref_1261_upstream	24	31	32	15	36	25	37	27	29	19
CTCAATGAAGCGATCG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGACATGCAGGTT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CAAGCATTTGCGTTGC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTCTTTAATAGT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTATTTCAATCTCTTC	alt_1261_upstream	5	5	4	4	4	5	12	6	5	5
GGCTTATTTAGCCTGT	alt_1261_upstream	13	21	17	6	20	15	14	13	14	17
GATCGGCAAGAATTAA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CGTGAGCAGCCAAGGT	alt_1261_upstream	11	9	12	13	12	6	10	9	17	12
CTCTCCCTGGCTCTCT	alt_1261_upstream	21	33	27	29	39	21	40	36	31	22
GTGGGAACCCTCTAGA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGAACGTTATGATGGC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CAATTGGTGTGCATCT	alt_1261_upstream	32	42	41	28	39	32	46	28	48	40
CTCAATTATATGTCCC	alt_1261_upstream	26	21	17	17	27	18	22	20	26	19
CTTGCCCCTAACCAAC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCTCCACGTCAAT	alt_1261_upstream	9	23	18	18	9	11	27	15	27	14
CGCTTGCCTCCTATTA	alt_1261_upstream	3	1	5	4	2	1	1	3	2	8
ACGGTCGATGACACTG	alt_1261_upstream	40	28	21	24	25	27	36	18	40	20
ACTATGTCGCCACTTG	alt_1261_upstream	11	9	9	15	7	5	8	7	14	4
CACTATACCTGTTGCC	alt_1261_upstream	14	34	25	21	26	16	44	19	24	14
GCGTTGTTTATTTTGT	alt_1261_upstream	0	0	0	0	0	0	1	0	0	0
CACTCCTGTAAGCTGT	alt_1261_upstream	32	29	27	26	30	36	44	30	41	30
GGATACACTGTTTATC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTAATAGAGGAGCATC	alt_1261_upstream	41	60	51	39	34	41	53	27	55	41
GACATGTTGGGGGTAG	alt_1261_upstream	174	198	179	171	177	155	215	178	198	156
TGTTCAATTCGCGGCC	alt_1261_upstream	29	42	53	41	44	34	51	35	47	44
AAGTGTCTCTTGACGC	alt_1261_upstream	27	28	36	20	26	22	36	18	30	30
GTGCTCGTTCTGTACT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGAACGTATGTGC	ref_1261_upstream	35	32	40	30	40	23	38	26	45	26
ACCCATAGGTAGGCTC	alt_1261_upstream	66	84	78	81	84	65	75	64	78	67
TGTGCTATGATTTCCT	alt_1261_upstream	0	3	3	1	1	2	1	4	0	1
TGAAGACTTTGGTCCA	alt_1261_upstream	18	23	17	21	38	21	21	12	29	23
GAACCAAAGAGAGCTT	alt_1261_upstream	66	90	90	64	81	79	87	67	90	61
GTGCTGGTCACGGCGG	alt_1261_upstream	13	8	10	9	9	13	8	8	7	8
TCAGTGCCATCTTCGG	ref_1261_upstream	15	12	10	9	11	8	13	5	13	3
TTTTTTTTCTGACCGG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTAAGAATCCAGT	alt_1261_upstream	2	2	2	3	4	1	2	1	0	1
TTCTTAAACTGTATTG	alt_1261_upstream	15	11	7	14	13	9	14	14	12	11
GAAACTTGCATACACG	alt_1261_upstream	6	4	12	5	4	5	10	4	16	5
GTATTACACACACCTT	alt_1261_upstream	3	4	2	4	5	1	1	0	3	3
CGGTGCGACTGTTCAA	alt_1261_upstream	13	32	16	6	28	8	18	9	32	12
ACGGAAAATTTGTTTC	alt_1261_upstream	3	1	8	2	4	2	8	8	4	5
ATACTTCTGTCATTTA	alt_1261_upstream	30	48	70	44	46	53	49	37	50	40
TTGGCATCTGGATTAT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
ATATGATTTACCTATT	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GCACTAGACTAAAAGA	alt_1261_upstream	26	21	30	21	41	24	30	16	40	31
GTATTTCGATCAGGAA	alt_1261_upstream	10	6	5	8	9	7	8	3	15	2
GTGTACGTGTATACCG	alt_1261_upstream	10	18	10	6	24	10	21	14	25	8
TTCGTACCATCGTGCT	alt_1261_upstream	83	138	122	115	145	107	148	86	149	78
ACATGGGAGGTCTGCC	alt_1261_upstream	42	42	47	42	52	31	49	44	58	41
TCCCACTGTATCCGTA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CGTATCGCTGATTAAG	alt_1261_upstream	9	9	24	18	19	10	14	9	17	11
CGCCGCGTTTGCAGAA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
AGATCAAGGCAGTCTC	alt_1261_upstream	19	21	26	21	21	20	21	20	27	19
TAGCTGCTCCGTCTGT	alt_1261_upstream	9	11	16	12	13	7	13	12	8	5
TCACAGGGAAGCCGAA	alt_1261_upstream	21	29	25	26	31	25	15	24	18	21
GATTTTGCCCCGTAAA	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TAAAATAAGATCTTTG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCCAGAGCATCTA	alt_1261_upstream	14	10	18	12	11	12	20	12	14	6
ACTCCATCCTTCACCT	alt_1261_upstream	51	68	45	51	71	51	85	44	76	42
TCGAGCCGGGGAAGCC	alt_1261_upstream	21	52	37	29	63	37	54	36	57	34
GCCTTTTGGTGGCTAG	alt_1261_upstream	10	28	23	11	26	20	26	8	29	12
TCCCCTTACGTACAAT	alt_1261_upstream	46	64	37	47	68	32	60	51	64	44
AAATCTTTTTCCTACG	alt_1261_upstream	13	12	14	16	9	12	20	13	20	14
TTAATTTATACTTCAG	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTCATCACTGGTCTGC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCCGAAGGCGATA	alt_1261_upstream	66	45	65	74	70	75	53	61	63	52
AACCCGAGAGGTTTAT	ref_1261_upstream	52	66	59	66	78	62	75	57	62	52
ACACACTTTCCGGCGC	alt_1261_upstream	17	13	13	4	13	14	7	5	10	6
AATATAGTACACGACT	alt_1261_upstream	73	83	76	66	96	47	113	53	100	61
CAACGACAGGTTAAGT	ref_1261_upstream	5	12	11	7	9	8	6	10	8	11
ATTGTAACGCAGGTGC	alt_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGTCATCTTCAAT	alt_1261_upstream	69	75	91	64	65	84	91	81	94	75
GGGTGATGATGTCTTT	alt_1261_upstream	43	35	41	37	38	31	36	32	41	35
TGATTAATCTTCCGAC	alt_1261_upstream	16	6	11	12	7	16	22	7	16	13
CCATTACTTTTCGAAT	ref_919_RC	116	75	103	83	97	102	64	92	71	96
TGCTCATCTCCTCTTG	ref_919_RC	0	0	0	0	0	0	0	0	0	0
GTTATGGCACCTGGCT	ref_919_RC	54	30	71	50	34	37	47	58	25	46
TTTCTGGGCCTCGTAC	ref_919_RC	170	108	225	196	89	166	102	163	117	173
GGCTTTTATTTAATAA	ref_919_RC	49	31	73	82	22	58	18	54	26	52
TATTGTGTTATATGTT	ref_919_RC	50	43	81	57	38	46	33	46	26	38
GCCAATTACACCGTGT	ref_919_RC	29	18	40	30	16	35	20	37	32	46
TGCAACTGGCGGTTTG	ref_919_RC	323	206	365	312	184	303	182	319	186	252
AACAGACAGTTTTGTG	ref_919_RC	16	15	16	18	18	12	19	11	24	14
CAGTCCACTACTTTCC	ref_919_RC	8	9	6	7	9	7	3	7	6	7
CACCGCATTCACGGCA	ref_919_RC	21	13	25	26	13	15	12	17	12	17
ACGAATTTTGGTTGTT	ref_919_RC	0	0	0	0	0	0	0	0	0	0
CGATTTAGCACCTAGG	ref_919_RC	0	0	0	0	0	0	0	0	0	0
GCAAGAGTACGACCTG	ref_919_RC	40	22	41	30	21	37	24	28	25	30
CCCTATAAGGGTATTA	ref_919_RC	47	15	50	42	28	48	23	38	23	34
TGCAGTGGACTTTGGC	ref_919_RC	138	81	185	134	90	111	85	132	107	116
GTTATGGGGTGAGTCA	ref_919_RC	43	25	36	35	15	42	26	51	21	29
GTTGATGCCTAATGGA	ref_919_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGTTATGTTAAT	ref_919_RC	287	164	339	297	187	281	217	293	191	280
TTCCTTTACCATAGAA	ref_919_RC	0	0	0	0	0	0	0	0	0	0
CCTTCCACAGACCATA	ref_919_RC	70	108	64	76	80	69	108	63	68	52
GTAGTCCTAATCTAGG	ref_919_RC	76	47	87	83	69	73	71	51	66	80
CGCGACCATTTTTTGT	ref_919_RC	24	9	53	33	14	39	12	17	12	37
CTCGATCATTCAGGAC	ref_919_RC	0	0	0	0	0	0	0	0	0	0
CTGTGCCACACGGGTC	ref_919_RC	0	0	0	0	0	0	0	0	0	0
CTGCTTCCGTAATGCG	ref_919_RC	107	64	140	111	60	107	78	88	58	64
GGCGTTGCCTGCGTAC	ref_919_RC	0	0	0	0	0	0	0	0	0	0
TAGTCTACGGGTCTTC	ref_919_RC	41	19	58	43	19	35	27	23	24	27
ACTTGATCCTTCTTGG	ref_919_RC	0	0	0	0	0	0	0	0	0	0
TTTCGTAAGCAGCCTC	ref_919_RC	118	62	180	130	94	134	91	121	93	131
TAATGCGATAATCCGA	ref_919_RC	37	13	43	28	29	24	17	28	14	35
CGGCCTATCATATTCG	ref_919_RC	93	60	121	91	53	80	50	90	62	87
TCTGATGGTGCACTCG	ref_919_RC	143	71	199	146	96	131	91	129	103	123
GGTTCTGCACCAAGGT	ref_919_RC	11	3	9	4	8	11	4	11	4	9
GCGGGGGGAGTTCATA	ref_919_RC	149	69	172	151	77	134	86	139	91	140
TTTTTAGCTTTCTCTC	ref_919_RC	65	22	74	58	33	46	30	54	25	64
ATCTTACGACGCTATA	ref_919_RC	141	84	192	156	98	142	84	123	97	110
CGTTCTTGTGGGATTA	ref_919_RC	19	12	27	19	13	17	13	21	7	14
ATACGTTTCATCACCT	ref_919_RC	25	8	19	19	7	15	7	15	7	11
GCACGTGTTAATTGTG	ref_919_RC	40	21	34	26	18	34	35	29	23	32
TTGTGTGGGAGTCCGC	ref_919_RC	15	4	16	17	9	13	13	22	11	12
ACAATCGGTAATGTTC	ref_919_RC	0	0	0	0	0	0	0	0	0	0
CTGGCTTTATCCGTTT	ref_919_RC	89	54	152	128	58	103	54	122	48	95
TAAATATAAATGCTCC	ref_919_RC	103	40	129	93	46	74	55	83	49	90
TTAGACCGGTCGACAT	ref_919_RC	43	59	53	50	62	43	63	31	73	40
CTTATCACCGCCATTC	ref_919_RC	0	0	0	0	0	0	0	0	0	0
GATCATATGTTTTACT	ref_919_RC	33	18	56	54	26	48	32	31	13	38
CGCTTAGACATTCCTA	ref_919_RC	63	34	80	63	47	68	34	64	36	47
TTCTTTTGGCTATGGG	ref_919_RC	81	52	114	115	59	78	58	82	51	73
AGTCGATACCTATTAT	ref_919_RC	8	6	12	5	6	5	6	12	5	8
CCCTGCTTATAGCTGA	ref_919_RC	23	14	34	24	9	23	25	27	19	31
TAAAAGCTCGTCAGAT	ref_919_RC	9	14	19	23	8	13	14	13	14	8
CTTTCCCTTTCTGAAT	ref_919_RC	10	6	10	17	8	13	6	7	4	5
TGGTATCTATAGCCAG	ref_919_RC	0	0	0	0	0	0	0	0	0	0
CCAGCCCACTGGCTTC	ref_919_RC	30	34	29	29	27	23	25	18	29	17
TTTGCACGGATTAGTG	ref_919_RC	33	24	60	32	36	41	20	24	21	26
GTTTAGTGTCTTCCCA	ref_919_RC	34	18	34	34	30	31	14	33	27	38
ACGTTAGCACTAGCTT	ref_919_RC	117	56	156	133	69	120	78	113	71	115
GGGGTACTTTGCCGCC	ref_919_RC	56	36	50	56	41	66	21	54	40	47
GCCGTGACCTGTTTTT	ref_919_RC	0	0	0	0	0	0	0	0	0	0
GTGCAAGATTTGTGAC	ref_919_RC	93	50	100	91	52	95	62	96	68	73
TCAAAGGACCACCTTA	ref_919_RC	0	0	0	0	0	0	0	0	0	0
TATACGTAATGCTGCC	ref_919_RC	72	35	97	68	37	49	33	65	46	60
GGGTAAATGTATTCTT	alt_6022_new	52	36	62	55	32	57	36	67	50	45
CGGAAGCTAGCACATC	alt_6022_new	12	6	11	6	5	3	8	1	4	5
CTGCTCGATATGGTCT	alt_6022_new	0	0	0	0	0	0	0	0	0	0
GCACGAGCTTCACCCT	alt_6022_new	93	93	140	90	95	136	73	92	79	104
CGTACACGCTTGCAAC	alt_6022_new	12	13	15	20	16	13	16	17	16	13
TCGCTTCGCTAATCCT	alt_6022_new	214	177	234	237	162	181	173	168	207	169
CGTTTTGACCCGATGC	alt_6022_new	72	38	82	62	37	35	34	64	60	66
ATTCGGTTGTTCAGGA	alt_6022_new	6	13	6	4	4	2	6	8	6	6
GCTCACTGATGCGCGC	alt_6022_new	96	87	117	79	63	75	89	73	79	95
CGTATGCATATCCTAT	alt_6022_new	71	64	76	67	46	69	56	81	60	65
GACTAGGGAACTTGGG	alt_6022_new	26	21	25	34	20	14	26	13	22	22
CCATTCAACATCGACC	alt_6022_new	42	33	35	49	29	41	30	36	38	25
TGCATCTTTCGGTCGT	alt_6022_new	36	30	39	31	36	41	32	31	39	39
ATCTCCACATTCGCCA	alt_6022_new	20	23	27	28	24	24	25	18	29	32
GTACAATCCAATGCCC	alt_6022_new	41	53	44	32	73	34	71	39	70	29
TTTTATACCTCAGTTT	alt_6022_new	14	19	22	17	20	21	7	16	11	14
ATAGAGTGGTAGAGAG	alt_6022_new	0	0	0	0	0	0	0	0	0	0
AATTTTTCCGCTTCGC	alt_6022_new	8	6	16	11	5	10	8	14	2	10
AGGTCCGGATGTGAAA	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TTCACTACCCGGTCTT	alt_6022_new	35	29	34	39	35	33	24	37	33	26
TGGGTATGGACCATGA	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TCTACATGGATCATTT	alt_6022_new	240	160	271	233	184	232	174	241	207	211
CTCGGACCGGAACCCA	alt_6022_new	210	203	237	204	199	176	235	225	209	176
GGCCCCGTGCGGCGAC	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TCATACCTTGATTAAC	alt_6022_new	61	42	81	62	53	59	80	45	46	53
AATGATTCCGACTCAC	alt_6022_new	30	27	46	36	35	37	18	23	22	27
ACCAGTATGGGAGTCA	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TTCTTTGTCGTACTAC	alt_6022_new	150	154	175	151	136	148	137	138	157	122
CGAGGATTTCCGTGTC	alt_6022_new	0	0	0	0	0	0	0	0	0	0
GCATGTAAGTCTTTGT	alt_6022_new	39	29	43	37	29	31	27	32	30	37
CATCGGGCTTAAACAT	alt_6022_new	40	28	38	39	24	27	37	41	33	32
CTGCTACGGAAAGCAA	alt_6022_new	84	63	113	81	62	85	76	83	73	89
TTAAAGCCTGGCTGCG	alt_6022_new	27	24	30	19	19	31	30	29	28	26
TAGTTTGTATGAGTAA	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TGCGGTAGGATATAGA	alt_6022_new	14	9	15	13	14	12	18	11	11	13
TAGAACCCTTACTTCT	alt_6022_new	19	7	29	12	16	22	16	18	13	16
CTAGGTCATCTTTATA	alt_6022_new	12	13	15	14	19	15	14	13	10	15
GACTGCCTCACACACC	alt_6022_new	32	14	37	31	25	23	12	17	16	22
TCTCTGTAGCGCAATG	alt_6022_new	38	27	64	44	38	39	31	45	27	38
GGAGGTTGGTAAATAT	alt_6022_new	20	20	25	17	14	25	7	21	13	25
GCTGGGATGTTGCATT	alt_6022_new	50	30	53	44	41	35	47	52	44	28
CTGCACATCGATTATT	alt_6022_new	134	109	151	135	103	111	105	140	109	92
GACCGTTCAAGTTGTC	alt_6022_new	48	38	48	33	36	28	52	31	35	45
AAAAACAAATGGGAAT	alt_6022_new	37	31	77	85	43	51	54	60	47	50
TGCTGTTTCATGTAGG	alt_6022_new	165	135	211	164	131	162	116	159	104	144
ACCCAATCTGCGCAGA	alt_6022_new	0	0	0	0	0	0	0	0	0	0
CTTACTCCTATCGGTT	alt_6022_new	89	78	97	105	72	89	89	65	73	68
CAGCTGGCGGCCCTCA	alt_6022_new	0	1	0	0	0	0	0	0	2	0
ATCCCACTGGGTTGAA	alt_6022_new	134	84	165	150	79	142	87	137	107	108
TGATGGTGGCTCGTGG	alt_6022_new	49	35	60	56	37	44	42	38	37	42
CCGGGAGCGATGTTTG	alt_6022_new	9	6	4	13	8	6	7	8	6	3
AACCACAGATCTGACT	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TCCCGAGCCGCTCTTC	alt_6022_new	35	28	59	35	38	39	41	38	33	29
GACTTACACTCACCCC	alt_6022_new	9	25	16	14	30	5	34	5	24	17
TCATTGCTTGACGTGT	alt_6022_new	92	50	88	82	70	67	71	57	54	44
CAGCTGTTAACCAATA	alt_6022_new	72	52	83	70	61	61	48	63	53	59
GTAACGTGAAGAGTCT	alt_6022_new	393	289	454	410	303	359	250	377	301	335
TCGACCTGGTGCCCTC	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TATTTCATATGGGTTA	alt_6022_new	54	50	85	63	42	42	32	52	54	54
GTCGCTGTCACTGTGA	alt_6022_new	59	64	85	68	51	59	54	72	58	80
GAGCACCGTACCGCTT	alt_6022_new	57	34	68	59	41	57	38	45	46	63
TGTGTTATCGGAAGCA	alt_6022_new	51	36	53	61	38	53	36	47	38	27
GCGGGCGGCCGGCACT	alt_6022_new	0	0	0	0	0	0	0	0	0	0
AGTTCTGGAACTCTAG	alt_6022_new	21	13	28	24	22	21	19	16	18	20
TAAATCCTATCATTGC	alt_6022_new	10	6	14	17	6	8	11	9	10	9
ATCCTTTTTCATCGGA	alt_6022_new	26	17	33	24	18	22	14	22	17	15
CTACCGCAAAATCTTC	alt_6022_new	105	79	138	122	90	111	102	117	100	122
CTTTCTTGCGTAAAGT	alt_6022_new	17	20	34	22	31	15	24	26	33	30
GCAAACGCTGACGATA	alt_6022_new	0	0	0	0	0	0	0	0	0	0
ATCGCCCACTCCATCT	alt_6022_new	18	6	10	12	6	15	16	8	15	13
GCAGTAGAAGCCAATC	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TATACGACGACCTGTA	alt_6022_new	57	42	73	59	33	67	49	68	59	50
CTTGCGAATCTCCGTA	alt_6022_new	168	124	215	125	129	136	147	149	137	126
GAGAGTTCGAGTCAAT	alt_6022_new	0	0	0	0	0	0	0	0	0	0
TGTCGTCTTACTTAGG	alt_6022_new	97	61	77	54	77	78	53	74	56	66
CAGAAATTGCCGGCTT	alt_6022_new	2	3	7	5	2	1	1	4	3	4
GTACAGGTCTTGTAAA	alt_6022_new	0	0	0	0	0	0	0	0	0	0
AGCGCCTCGTTCTGGC	alt_6022_new	48	33	38	44	54	45	41	56	51	40
TCGGCCCACCTGTGTT	alt_6022_new	0	0	0	0	0	0	0	0	0	0
AGCTCATTGCTTTTCC	alt_6022_new	19	13	26	18	20	15	21	16	16	18
TCGGAGATATCCGTGA	alt_6022_new	29	24	26	32	10	20	21	28	23	20
CACAGTTCAATTTTTT	alt_5696_new	0	0	0	0	0	0	0	0	0	0
TCCTGGGAAAACTCTG	alt_5696_new	418	241	527	467	253	410	267	396	257	376
TTGGCGACGATATTCT	alt_5696_new	102	49	105	98	56	70	36	74	64	75
TTACTCGCCGCTGGCA	alt_5696_new	0	0	0	0	0	0	0	0	0	0
CGGTCTTTTGCATATG	alt_5696_new	15	5	26	22	10	22	9	15	14	21
CTTGTTATTTACAGTT	alt_5696_new	163	126	192	197	124	170	144	134	128	161
TGGTCAGGACACGGGG	alt_5696_new	12	3	18	9	7	11	8	10	9	9
GTTTTAATGTTTCCAT	alt_5696_new	0	0	0	0	0	0	0	0	0	0
GGCCTTTCGTCGTTTG	alt_5696_new	24	25	37	31	25	31	33	19	24	27
ATCCCAGCAAACTTAG	alt_5696_new	13	5	27	23	10	14	9	21	12	14
TCAGGTACATCTAGTT	alt_5696_new	17	26	21	32	40	25	17	30	19	17
TTATGGGGTGGTAGCC	alt_5696_new	26	21	38	42	21	38	26	32	21	28
TGATAGGTCGTCTGAC	alt_5696_new	39	25	43	38	23	24	25	51	40	23
GTGCAATCGGTCGAAT	alt_5696_new	27	19	31	40	30	27	23	31	31	30
GGGATCTCCGCAGGTA	alt_5696_new	0	0	0	0	0	0	0	0	0	0
GGCGTCCGGCATTATG	alt_5696_new	37	28	51	43	26	45	32	36	25	38
TGCTTTTCGCCTGTAA	alt_5696_new	46	41	59	67	38	59	36	40	44	54
GTCAAGTTATAGCTTT	alt_5696_new	240	157	324	240	169	241	150	203	176	213
CATTGTTTGCTATGCA	ref_5696_new	0	0	0	0	0	0	0	0	0	0
AACAAGTGCGCATCCC	alt_5696_new	8	14	7	16	12	6	10	7	5	9
GTGGCTAATTTGGTTA	alt_5696_new	0	0	0	0	0	0	0	0	0	0
CCCTAAGGGATTACAT	alt_5696_new	54	31	56	47	23	39	26	47	22	33
TGTCGCGCGTGCTTAG	alt_5696_new	52	47	66	62	38	49	41	55	29	45
GCCCAGCGTATTGTAG	alt_5696_new	7	2	13	11	8	9	5	5	5	7
TGTGTAATGCGAATTA	alt_5696_new	111	73	132	104	69	110	70	98	76	75
TTCCCTACCCTCAACT	alt_5696_new	15	20	20	15	17	16	21	10	14	13
ATGCTTTGTGAATATT	alt_5114_upstream	21	30	39	24	14	38	26	31	34	27
TTTCCGTATCACACAC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTTAGTATTACGG	alt_5114_upstream	52	49	65	58	37	62	51	54	54	49
GTAGCTGCTCTCTGCG	alt_5114_upstream	43	31	51	60	23	54	31	49	42	47
ATGGGCTGGGCTCGTC	alt_5114_upstream	105	76	144	107	91	121	107	128	87	94
CTCTATTTAACTGCGG	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCGAACCGGCAAT	alt_5114_upstream	155	123	148	165	128	141	128	140	134	121
CAGCTTCGGCGGATGG	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GACATGAATAAGGTGC	alt_5114_upstream	45	23	60	48	26	39	36	37	33	40
TTGTATGCACTTGTGG	alt_5114_upstream	57	56	65	50	57	72	60	56	51	46
TTGGTGTGGTGTGTTT	alt_5114_upstream	47	40	49	40	29	31	27	35	26	29
CGGTGAACACCCGAAC	alt_5114_upstream	112	78	140	119	66	100	77	95	77	89
GCATATCCCTGTCCAC	alt_5114_upstream	88	72	109	115	90	79	100	92	103	93
GGCCTCTACAGTGTCC	alt_5114_upstream	13	9	19	10	10	13	5	16	5	13
CAGTGAACACCCGAAC	alt_5114_upstream	32	26	28	31	23	26	17	25	32	25
GCGGTTGCTTGACCTG	alt_5114_upstream	32	31	42	31	19	23	23	38	37	28
TTGGATGGCGTCGCGC	alt_5114_upstream	16	5	19	14	12	16	9	14	5	8
TCTTGGACTCTCGGGC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGCTCTAGATCC	alt_5114_upstream	40	54	81	71	63	62	62	63	62	49
TCCAATCCCGTCTGGC	alt_5114_upstream	122	117	149	116	98	96	102	66	102	81
TAAACCTCATTTATAA	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGGAACACTTATC	alt_5114_upstream	45	32	68	50	37	44	36	52	44	38
AACTATATAAACGTCG	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GGAACGTAACTAGCCG	alt_5114_upstream	186	136	237	204	143	191	141	184	183	183
TAGCCTTGGGTCACTG	alt_5114_upstream	62	46	99	79	67	63	44	69	53	63
GATCTATGATTCTCGG	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
AATGCGGTATGTGTAC	alt_5114_upstream	76	70	97	80	61	67	63	83	56	68
TAAATCGACTATATGG	alt_5114_upstream	48	24	59	43	23	43	24	54	39	34
GACCGCGGCGGAGGCA	alt_5114_upstream	56	42	116	77	64	77	74	78	65	61
TATAAGCTCCAGTATC	alt_5114_upstream	234	194	279	279	208	237	190	261	206	256
CCTGTGTTTGAATTTA	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCCTTGGATCTAG	alt_5114_upstream	16	3	22	20	9	8	8	15	18	10
ATGCAATTCGCTCATT	alt_5114_upstream	49	48	66	58	37	58	37	60	54	44
TTGTGCTTGGTGTTTA	alt_5114_upstream	57	78	89	65	85	51	70	70	82	56
TGCCTTAGCGGGATGC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
CACCACAATGTTGTTT	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GTATCCCATTAGCTCG	alt_5114_upstream	153	120	181	164	144	135	161	136	117	113
ACTCAACCTGCAAACC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GCCTATGGCATTTTGC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATCGATGGTATGCGAG	alt_5114_upstream	22	19	35	35	12	26	17	22	15	23
AGTTCGCAAGGTCCCT	alt_5114_upstream	13	12	24	22	22	19	19	25	18	21
GTGGCGCATCTTGCCC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGATTGTTTATGC	alt_5114_upstream	54	39	54	51	47	46	37	40	41	36
CCGTTTTTTGCAGTAG	alt_5114_upstream	216	425	367	309	459	258	477	241	469	223
CTCAGGGCCTTGTCTC	alt_5114_upstream	68	62	89	106	52	71	73	73	78	80
TTGTCTATGAGTGGGC	alt_5114_upstream	19	22	26	10	13	20	8	23	20	16
CCTACAATTCTTCCTT	alt_5114_upstream	59	51	79	59	41	67	41	66	35	54
GTACCAAGCATTGGCA	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GACGAAGTGATGGTGG	alt_5114_upstream	163	80	203	165	107	184	96	165	119	192
ATCGTATACTTGCTCA	alt_5114_upstream	188	142	244	216	163	175	167	180	162	167
GGTCCTCCTTGCTCTT	alt_5114_upstream	193	135	219	223	125	175	148	186	159	173
GGCGACTGGATTAGCA	alt_5114_upstream	307	171	347	369	178	274	162	316	176	269
CTCGTTGTCGGCTCTT	alt_5114_upstream	42	32	55	49	32	40	31	30	49	55
TGGCCTTTCGCAGGGC	alt_5114_upstream	150	116	183	184	92	179	88	147	98	141
TGTCACAAGGGTCTTC	alt_5114_upstream	77	71	96	71	47	90	77	70	67	104
AGCTATGACTACCCTA	alt_5114_upstream	35	39	54	47	58	53	52	48	71	35
CACCATCCGTCAGACG	alt_5114_upstream	23	20	27	22	23	21	31	25	30	26
ACTATGCTGGCCTCGA	alt_5114_upstream	42	46	72	37	38	51	28	55	41	38
GAAAGACTGCACATTA	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
AATCATGAATCCTCTC	alt_5114_upstream	20	12	20	15	11	11	9	17	14	17
AAGTCTATGTACAAAC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCGCGTTTCTCCT	alt_5114_upstream	53	33	47	35	26	40	20	47	42	30
CAGGTCCATGTCTTTA	alt_5114_upstream	31	39	40	32	38	25	51	28	70	17
CAGGCGAGTCCTCGTC	alt_5114_upstream	21	8	17	25	24	14	15	18	9	23
GGCGCTTAACTCGCAG	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATTAAATTATGACTAT	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTCTCGCCTTCCT	alt_5114_upstream	35	16	30	24	17	25	16	26	17	23
CTGGCTAGGAACTTGT	alt_5114_upstream	116	83	123	116	111	106	68	108	87	83
TACACGTCTTCCCATG	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGGCGACTTTATT	alt_5114_upstream	26	17	26	35	11	19	10	23	22	23
GAGAGATACTGTATCG	alt_5114_upstream	52	48	56	61	36	51	40	48	39	52
TATCGGTCGTATTCAT	alt_5114_upstream	100	80	102	89	55	75	62	73	89	48
GCCAAATAATTAAGCA	alt_5114_upstream	147	119	157	144	122	140	110	134	119	141
TGGTGCGCAACGTGGG	alt_5114_upstream	62	72	88	74	63	48	61	87	85	78
ACGGAGACCGTTTCCG	alt_5114_upstream	12	17	18	10	9	5	11	13	7	7
CAGTTGCGCAAACCAC	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
AATGTTTGTTAGATTA	alt_5114_upstream	81	56	80	88	73	76	50	93	70	63
ATTTTGGCGCCGTATA	alt_5114_upstream	40	28	61	46	23	34	38	44	41	40
TCGTCCTAATCGTTTA	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGCCTTATATTCA	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
GTATACCCGCACGCGA	alt_5114_upstream	55	39	84	76	50	55	54	68	45	55
GTGTCTTTCTAGTAGT	alt_5114_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTAACCGCCAGGT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGGAATCGAATCG	ref_1116_upstream	48	55	71	61	65	51	54	45	73	36
ATTGCTTGCGTCCACC	ref_1116_upstream	8	3	11	3	1	3	8	7	7	7
GTACCCCAGGAGTAAC	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGTTAATCCTGAA	ref_1116_upstream	87	76	103	74	64	73	69	58	76	64
CGTTGTTGCTTTTCAG	ref_1116_upstream	26	16	26	34	19	21	15	18	19	27
ACGCTTATGTACGCTA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCTTTTGGTTAGT	ref_1116_upstream	21	23	19	19	18	18	21	16	28	18
GCTATAGCTCCAGCAG	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
TCGAAGTTCTACGCAA	ref_1116_upstream	27	29	30	20	28	30	26	20	40	20
GCAAGAGCAAACGAAG	ref_1116_upstream	15	18	28	22	17	16	28	28	23	31
ATTGGGTATCGGCCCA	ref_1116_upstream	57	51	68	62	43	53	55	65	59	32
GAGGCCATGTCACGGA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GTAAACCTAGGGTCGT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
AGCAGTTAATTAGGCT	ref_1116_upstream	9	10	18	15	13	9	17	12	18	20
AAAGAAGTAGTAACCT	ref_1116_upstream	10	4	4	1	5	1	2	5	4	2
GCGTTCTCGAATCTTC	ref_1116_upstream	63	62	84	85	94	79	78	54	60	45
GGTACGTAACAATGCG	ref_1116_upstream	80	70	94	80	68	75	77	67	83	69
TAAGTTATCAACGAAG	ref_1116_upstream	153	148	162	183	170	165	197	162	167	150
ATGACCTGTGACTAAC	ref_1116_upstream	52	34	55	34	37	35	41	51	35	30
GCTATTCTCTTTGCAT	ref_1116_upstream	62	61	75	65	39	58	55	58	75	56
CATCGCGCCGTTTTGT	ref_1116_upstream	65	54	79	69	46	68	61	55	66	56
ATGCAGTGGTCACATT	ref_1116_upstream	14	10	8	6	4	9	6	7	12	5
GACCCCTTGCCATACA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
AAAATTGTGGCACGTC	ref_1116_upstream	225	204	277	238	189	236	174	238	221	205
GTTACCTGTTCTTCCA	ref_1116_upstream	11	25	13	17	27	14	20	13	21	10
CAAGCCACGGCAGTAC	ref_1116_upstream	8	29	9	4	35	6	38	2	36	9
TCTGTTTCGGGTATGG	ref_1116_upstream	15	18	38	15	21	18	24	23	17	15
GCCTTTGCCGCCTCAT	ref_1116_upstream	24	24	26	31	24	19	26	20	20	25
CAGGGGAAGTCAGTTG	alt_1116_upstream	43	78	70	49	70	59	59	44	68	34
GTCTATCTTCTCGACA	ref_1116_upstream	20	32	36	26	26	22	20	21	23	20
TCGATCCAGGAATGCT	ref_1116_upstream	20	13	19	19	16	21	12	16	10	18
CAGTCAATGTTGTGTT	ref_1116_upstream	22	26	25	24	34	20	30	29	28	17
TCTTAGCAATACTGTA	ref_1116_upstream	25	20	36	37	37	42	50	23	33	26
TGCTGCCGTTGAGGAG	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GACTTGCTCCCGCCGC	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
TGCATTTGTTAGGGGG	ref_1116_upstream	7	6	5	6	2	9	4	3	2	3
AGTAACTTATAATGAC	ref_1116_upstream	42	59	68	53	65	30	50	44	83	50
CTTAACCTGGAGAGTG	ref_1116_upstream	53	56	61	38	42	52	60	52	46	38
GTTGCTGTTGACCATT	ref_1116_upstream	51	61	66	55	74	45	66	44	58	48
CCGACTTAAGGATACT	ref_1116_upstream	68	53	87	82	62	64	63	58	66	61
ATAAACATATCAGAGA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GCAATACCCTTTTGTG	ref_1116_upstream	178	166	177	181	161	154	195	162	198	172
GCAGGCCACTCCCATG	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAGTGGGTACTGC	ref_1116_upstream	81	85	127	98	103	103	74	78	77	70
TAGGGGACTGGTGTGG	ref_1116_upstream	48	37	59	55	58	39	52	36	55	44
CTAGAGTTGTAGTGAC	ref_1116_upstream	31	30	22	27	31	24	31	29	50	22
GGCACTTGTTCAACCG	ref_1116_upstream	154	148	165	125	201	121	160	151	171	112
GTTCAGCTCGAAATTT	ref_1116_upstream	22	18	18	19	19	15	12	19	21	8
CTTGATAATGGTGTCA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCCATGAGATTCT	ref_1116_upstream	2	6	2	1	2	7	3	4	2	1
TGTGCCTGCAGTAATA	ref_1116_upstream	65	69	85	53	64	57	52	56	78	67
ATATAGAAGCTCTGGT	ref_1116_upstream	93	65	106	93	72	99	86	97	89	74
ACTTATCGTTCTAGAA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCGGTTTCCTATA	ref_1116_upstream	62	41	95	74	44	59	60	68	56	65
CGTGATAGCTTTACAC	ref_1116_upstream	32	23	32	26	22	20	23	18	26	19
AACAGTAATGCGTCCT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGTGGTGGGATAC	ref_1116_upstream	4	2	12	5	3	6	6	5	4	5
TTTCTTAGTTATCTGT	ref_1116_upstream	49	37	61	49	63	51	57	57	49	38
GTATTGGCCATTAAAC	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTTTTGGTGCGA	ref_1116_upstream	17	28	14	15	14	13	25	13	11	10
TTTTTGGGCAGGTCGC	ref_1116_upstream	67	54	82	61	77	63	74	58	64	46
GTGTTTAGAGAATGTC	ref_1116_upstream	2	5	2	0	4	6	1	2	0	4
TGCCTTGTTTTTGCCG	ref_1116_upstream	66	78	90	72	57	86	94	70	54	49
TGATAAAGAACTTCTT	ref_1116_upstream	208	142	264	174	149	178	167	185	173	170
ACCCGAAGTAGATCGT	ref_1116_upstream	24	26	28	16	15	23	28	21	17	29
TCTGGATTATTGGAAT	ref_1116_upstream	55	60	59	40	48	54	44	43	46	56
GCAATGATACCGTTCA	ref_1116_upstream	16	9	15	11	22	10	6	7	14	13
TTTGCGGGAAATCTCT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
AAGGTTAAGGCAATGA	ref_1116_upstream	24	23	42	34	19	34	22	34	18	25
GAATCTATTCTCCTCA	ref_1116_upstream	2	5	2	1	2	0	5	10	2	3
GATCAGCGGTTTCCCG	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCCTCTCTTATCT	ref_1116_upstream	29	46	35	20	56	23	62	34	52	22
CTGGTTCGCGATAGTG	ref_1116_upstream	54	55	50	61	83	46	64	52	85	55
AATTCCTCCGCTCATA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
AGGCGTGTTAGATGAT	ref_1116_upstream	79	67	77	88	57	66	89	67	71	54
GATCTCGGTCCCATAT	ref_1116_upstream	92	74	112	106	77	83	84	84	88	71
GTCGCATTATATTCCC	ref_1116_upstream	5	11	12	7	9	8	17	7	9	2
CTCGAGTGATCCGGAT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
CAACAAGGCACCGAGT	ref_1116_upstream	79	62	99	84	81	81	78	102	66	86
GTACCCTTGTTTCAAG	alt_1116_upstream	72	64	72	55	63	50	60	65	55	65
TCGGTGTTTTTGAAAT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GAGCCAGCTTCCGACG	ref_1116_upstream	25	27	36	29	33	26	39	22	36	17
ATCGTATACTTTCGTG	ref_1116_upstream	32	33	23	29	28	34	29	18	40	19
GCCAGCAGTGCTGTTA	ref_1116_upstream	15	51	17	17	43	17	41	9	47	6
GGCCATATCTCCTTAA	ref_1116_upstream	71	55	89	104	76	73	57	74	66	79
CGCATTAGGCCTTGGC	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
TTGTATCATCATTATA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
CTCAACCGCCTCACGT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
CAAGCGCTTACCTACG	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCTATGGTGAGAT	ref_1116_upstream	77	56	72	55	64	66	74	71	67	48
CATGCGCTTACCTACG	ref_1116_upstream	216	283	220	164	274	164	266	161	299	157
CGGCATGACACCACCC	ref_1116_upstream	2	0	7	1	3	4	1	5	5	4
GGGAACCTGGGATTAG	ref_1116_upstream	66	70	93	52	64	60	66	77	61	76
AAAGTTGGTTCGTTTA	ref_1116_upstream	21	20	32	30	23	15	30	19	26	18
TCGATATAATGCCTCC	ref_1116_upstream	77	57	137	122	78	88	92	77	81	86
GGAATTTTATAATTTC	ref_1116_upstream	57	55	53	63	35	55	50	46	40	56
CGTGCGTTTTGAACTA	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GGGAGCTGGAGCCATC	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTTTTTGGTGCG	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
ACAAGCCTTCACAGTG	ref_1116_upstream	24	24	29	30	23	17	30	34	38	24
TAGCATCTACTATCCC	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
GTTCAGCTAATGTTGT	ref_1116_upstream	28	37	44	28	41	25	43	20	42	26
GGAGGTTTCAGCGCAA	ref_1116_upstream	12	19	28	25	16	17	22	10	14	24
CTCAACCGGCTCACGT	alt_1116_upstream	221	407	339	323	365	256	389	291	401	247
ATGGTTAATATCAGCT	ref_1116_upstream	51	43	77	48	51	52	44	52	62	46
ACGTGAGAATCAACGC	ref_1116_upstream	16	16	23	8	18	15	20	7	11	8
CTCGTCGCCTAGGTTT	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
AAACTGTTTTTATCTC	ref_1116_upstream	0	1	0	2	0	0	1	0	1	0
CAATGCTGCACCTACG	ref_1116_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGATCGCAGATTT	ref_1116_upstream	102	71	83	90	55	75	92	73	66	67
GTTGATCGTTCTAGAC	ref_1433_fdr	15	23	27	9	17	23	18	18	17	22
TTTCGGGTTATGTCGC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGTGGTCCAGACC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
AGACGAGGTTCTGTGG	ref_1433_fdr	19	5	13	14	16	11	11	14	10	8
TGTGTCAAGCTCCATC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CGGATTGAAGTCGAGT	ref_1433_fdr	61	33	92	54	48	51	40	50	30	52
AGTGTGCTCTGGGCAG	ref_1433_fdr	35	36	55	41	41	43	34	44	26	37
TTGTCAGCAAATTTTC	ref_1433_fdr	544	318	669	584	341	496	303	542	327	474
TCAGCGGGCCATCGTT	ref_1433_fdr	54	38	63	53	28	48	41	61	37	58
TAATGAGGTGAAGGCC	ref_1433_fdr	13	6	26	25	19	11	15	20	14	19
CCGGCGCCGTTTAGAT	ref_1433_fdr	57	43	72	73	38	49	53	42	47	46
CCCCGTCTCGTACCAC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTAGCTCTGATCA	ref_1433_fdr	107	86	109	112	70	97	84	91	75	101
CAACTGGAAGAAATAT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CAGGCTAATAGACAAG	ref_1433_fdr	10	6	3	8	5	7	4	7	2	6
TTGGGCGAGAGTAGAT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CCGGGTGTGCGATTTT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TTCACAGGGCGCTTCG	ref_1433_fdr	38	20	39	24	16	27	25	49	16	36
CTTTGTACCGCTTGCA	ref_1433_fdr	15	8	31	17	8	25	18	16	7	13
CCCTCCTTTTTAAAAA	ref_1433_fdr	47	28	87	58	46	38	42	60	41	51
CTTGGGTTGTCATTGG	ref_1433_fdr	19	22	27	21	22	28	19	21	20	15
GTGTCTTTCTTACGTG	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
AACGTCTTTGTGTGTC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TACCCCAGCTACTTGG	ref_1433_fdr	10	11	16	10	8	14	6	6	6	9
CCCTTAGTTATCATAT	ref_1433_fdr	6	10	12	9	8	10	17	6	9	6
CATCCAAGTTCAGCGA	ref_1433_fdr	19	17	30	24	16	22	12	24	10	29
TAAGCTCACTTCCGAT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGTTCTAATCTCC	ref_1433_fdr	22	9	20	22	10	20	7	16	12	19
GTACACAGCCAACATT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TCGAATCGTCCGCTAC	ref_1433_fdr	23	22	17	15	20	16	9	22	12	15
CCGCGTACTGACGTTC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
AGATGTTCGATCAGAA	ref_1433_fdr	84	46	140	97	74	92	68	83	75	92
AACTTGCTCTTAAAAT	ref_1433_fdr	23	10	27	22	17	25	9	23	17	19
TTGGGGGGTGTATCTC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTTGATGCGTGG	ref_1433_fdr	14	5	20	11	7	8	8	14	5	19
AAAGCATAGTCACATG	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
AGTATATCTTTCCGCA	ref_1433_fdr	35	30	49	35	21	25	25	22	21	16
TGGTTCAAAGTATACC	ref_1433_fdr	63	54	98	113	60	81	81	80	68	70
CTTGTGTCCCCTCAGC	ref_1433_fdr	35	31	31	37	30	30	33	43	41	33
AACCGGTCCGTCTTCA	ref_1433_fdr	10	21	21	22	14	12	12	11	23	12
TGATCTGTGGATCTGG	ref_1433_fdr	66	52	86	72	39	71	54	72	51	56
TGGAACTCCATGAATG	ref_1433_fdr	133	88	163	136	63	127	80	123	82	114
TGTAGGGAGTGAATTG	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTAGTAAGCCACG	ref_1433_fdr	53	28	61	55	37	54	33	42	44	49
GTCAGTTTTTCGATTT	ref_1433_fdr	37	25	44	27	31	26	20	27	30	47
TGTTCCGCATGGATTC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCTAAAAGATATT	ref_1433_fdr	66	46	72	50	51	45	39	56	48	67
CCCGTGATTTTGGCCA	ref_1433_fdr	23	15	37	25	14	18	17	40	17	13
GTTCATATCTTCATGC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GGTCAATCGTTCCAGT	ref_1433_fdr	4	3	2	3	2	3	2	5	1	1
CGGCCGCGTATAATCC	ref_1433_fdr	13	21	14	10	16	19	21	14	30	14
TGCGTAGGGTGCCGTA	ref_1433_fdr	51	31	65	57	35	60	30	58	48	49
AATGAAATTCCGTGGT	ref_1433_fdr	3	2	6	6	1	4	2	1	1	4
TTTGTACGTTGTCTCA	ref_1433_fdr	15	13	37	28	13	15	14	28	15	18
ACGTCTAAAAGCTATT	ref_1433_fdr	6	10	21	11	11	17	13	11	7	5
GTCATCCATAATGGGG	ref_1433_fdr	56	28	57	58	28	49	37	54	41	33
GTTAATACGGTTCAGA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GGACGGGGGTTGCCGA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CTGGAAGGTAGTATCT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CAACTGCGACCGCCTC	ref_1433_fdr	67	41	80	63	36	46	63	53	43	48
TTATGTAGGCCTTGGA	ref_1433_fdr	10	8	16	15	13	10	8	12	7	12
GTAATCCGCCCGGACG	ref_1433_fdr	9	1	18	14	7	13	10	10	7	8
GCGTCCATGCGATGCG	ref_1433_fdr	91	69	141	115	84	117	74	106	105	96
GGCTAAACGTTCCACT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GCTATATCTATCTGTT	ref_1433_fdr	99	60	100	83	60	71	66	89	46	82
CTAGTTCGGCCATGGA	ref_1433_fdr	69	40	62	49	24	53	33	48	29	31
TGGCCGTTTTTTAAGC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGAAGTTCGACTG	ref_1433_fdr	7	5	8	7	7	6	1	6	9	4
TGGATCGAGCGACTTT	ref_1433_fdr	4	10	7	6	4	4	9	8	5	12
TCTGTCCCGGGTGATA	ref_1433_fdr	25	14	19	19	17	18	12	25	17	19
CGTTCCTTTACGCCTA	ref_1433_fdr	539	366	653	524	387	485	441	511	443	400
TTGACCTTACGTTTGC	ref_1433_fdr	1	3	3	1	4	4	0	0	6	0
ACCTTCTTGTAACTCT	ref_1433_fdr	16	13	18	21	17	25	10	16	18	20
GACGGCAACACTTGTC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GGATCCAGCTTTGTGA	ref_1433_fdr	10	19	16	25	30	25	15	34	14	24
TTAACTTCGCCCGATC	ref_1433_fdr	155	80	179	140	80	121	77	113	79	139
CCTCATACGAATTCAC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CATCGATCGGAATGTT	ref_1433_fdr	27	16	33	20	13	27	11	16	23	13
GTATTATTGAGTGCGG	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CACCTGATGTAAGATC	ref_1433_fdr	40	37	73	52	43	65	28	48	29	42
GGACCTGTGTAATGGT	ref_1433_fdr	20	15	21	21	9	26	19	13	15	14
CTCCCTGCTCCTTAGC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CATTCACCGCCCATAG	ref_1433_fdr	21	7	14	23	2	10	4	6	5	9
TCAGTGGGCCTCCCAA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TCCATAAGTACCGTCA	ref_1433_fdr	19	11	26	20	18	18	10	24	19	17
GGGGAACTTGTAATCT	ref_1433_fdr	129	69	141	127	66	98	81	127	74	112
CCGTCAGGAAATAGAT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TAACGTGAGCTTGGTA	ref_1433_fdr	23	22	33	23	15	14	11	20	15	18
GTTCAAATGTAAAGGC	ref_1433_fdr	96	56	90	81	48	76	52	59	65	77
GTGGTTACCCCTCTAG	ref_1433_fdr	164	106	183	170	105	138	106	136	107	164
GTACGGTGCCTGCCGA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTCCCTCATGGGC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTCCGTTATCTCT	ref_1433_fdr	16	9	19	14	13	18	11	19	13	13
CTCTGCTGTCATATGG	ref_1433_fdr	12	11	21	23	19	17	19	15	14	17
TTTGTTCTTGTAAAGA	ref_1433_fdr	40	25	44	32	35	34	27	35	29	31
ATTGGCGCAAGCCAGT	ref_1433_fdr	41	19	46	57	25	35	31	44	31	38
TCTTTTAATCGAAATT	ref_1433_fdr	43	26	42	44	37	32	24	29	20	39
GTGAAGAGGTGGTTTA	ref_1433_fdr	37	14	45	34	22	35	22	33	27	20
TAAATAAAGCGAAGCA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCTAGATCCTACC	ref_1433_fdr	12	15	23	20	17	26	21	24	31	14
CAAGGGGACTTGACGT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
GACCAGACACTCAGCA	ref_1433_fdr	120	57	114	103	61	85	80	85	88	75
GTGCCGTTTCCTTCAA	ref_1433_fdr	46	29	43	49	29	40	27	45	26	32
TAATGTGGACATTATG	ref_1433_fdr	1	2	1	1	2	1	0	3	3	4
GGTGCTGTCCGTAATA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TATATGTCTTGTCTAA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCGGGATCGTGGG	ref_1433_fdr	28	23	28	23	14	23	16	21	17	21
GGGTAGTGGCTTTATC	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
AAGCCGCTCTCGGGTC	ref_1433_fdr	135	93	150	149	98	123	98	139	116	115
TATATTTCATTTTACT	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGATAGCGCGGCA	ref_1433_fdr	3	0	8	3	1	5	2	2	3	3
ACGATGCATTTTAGCT	ref_1433_fdr	4	5	5	4	3	1	3	2	4	4
CCGAGCTACGGTTTCC	ref_1433_fdr	8	4	9	9	5	9	3	10	3	5
CGCGCTCCATCAATCC	ref_1433_fdr	22	14	33	26	19	25	13	27	15	20
CCCAGGGGCTCCGTTC	ref_1433_fdr	26	13	23	20	19	22	19	22	19	28
AGCTCGCCGGAGCGGA	ref_1433_fdr	253	162	277	260	154	217	184	232	223	195
TAACACCGTAGGTCGA	ref_1433_fdr	8	4	9	3	1	6	2	7	0	7
TTCTGGTGATCGCGTG	ref_1433_fdr	42	17	20	27	20	42	25	27	28	14
CATGAACAGCGTATCA	ref_1433_fdr	211	115	251	191	135	180	121	189	152	183
CTTGTTGGGACAAGTT	ref_1433_fdr	74	54	126	89	55	73	56	73	71	69
ATTTATCATCCTTTTT	ref_1433_fdr	32	15	32	44	18	29	18	38	18	24
AGACATTCCGATTTTG	ref_1433_fdr	124	83	159	153	80	135	79	142	96	138
CTAAGATTTAGGTACG	ref_1433_fdr	197	119	216	224	136	192	149	159	140	178
GATGTGTGCTCCCGGC	ref_1433_fdr	37	14	21	30	27	23	19	24	23	22
TAGTTTACATGCTCAT	ref_1433_fdr	20	27	44	18	19	19	20	17	31	29
TAAATGCGTACTTGGG	ref_1433_fdr	9	4	4	5	1	8	2	2	6	2
CCATTTATTTGGCGGC	ref_1433_fdr	328	231	386	342	205	338	227	302	255	305
GCTGACCCGCTGCTAT	ref_1433_fdr	13	6	15	6	7	7	6	14	8	12
GCGCTCAACTTCTTGT	ref_1433_fdr	26	7	19	30	10	18	10	19	11	17
ATTTTGCACGCATCTC	ref_1433_fdr	36	35	69	44	43	19	23	35	15	28
TACTTTTCTAATAGCA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTTATTTCTCACG	ref_1433_fdr	61	30	54	45	36	52	25	49	38	38
TAGACGATTAATCTGA	ref_1433_fdr	46	21	43	45	34	37	21	47	49	36
TTCGCCAGTAGAGTAC	ref_1433_fdr	148	142	179	163	117	146	153	136	114	131
TTCGCTACTTATGTGA	ref_1433_fdr	0	0	0	0	0	0	0	0	0	0
CTATCTCAGGCGTCAA	ref_6049_new	0	0	0	0	0	0	0	0	0	0
TAAGCAAGTATTCAGT	ref_6049_new	0	0	0	0	0	0	0	0	0	0
AGGCCCTCCTCAACCG	ref_6049_new	0	0	0	0	0	0	0	0	0	0
AATCCGCAAGGCGCCA	ref_6049_new	68	72	100	83	76	60	68	67	65	72
TTGTCTACTCACAGGA	ref_6049_new	0	0	0	0	0	0	0	0	0	0
TAGTCGCTGCTGCGCG	ref_6049_new	0	0	0	0	0	0	0	0	0	0
ACAAAGGGATATATTA	ref_6049_new	25	24	40	28	30	34	35	19	38	23
CCTTTTTGTTCTGCGC	ref_6049_new	1	4	4	2	2	4	0	2	3	0
TTTACTATCGGTTAGG	ref_6049_new	14	27	33	25	19	17	33	17	24	25
AGTCGGGGCTTTCCTA	ref_6049_new	81	78	69	59	85	54	92	48	117	50
GAATGTGATTAGCTTG	ref_6049_new	58	77	63	54	75	53	95	60	73	50
TTTATCAGCTATTAGC	ref_6049_new	0	0	0	0	0	0	0	0	0	0
ACGCCTTCTAAATGTT	ref_6049_new	21	13	21	10	18	15	22	21	18	16
CTCATCTATACCACGT	ref_6049_new	0	0	0	0	0	0	0	0	0	0
TGTAGCTGCATGGCCA	ref_6049_new	0	0	0	0	0	0	0	0	0	0
TCCTGAATTTCGTTTT	ref_6049_new	26	41	46	49	68	48	58	42	45	48
GGTCATGGTAGCTCGG	ref_6049_new	0	0	0	0	0	0	0	0	0	0
GCCGAGGCTTACCTTG	ref_6049_new	1	24	3	5	22	2	19	1	21	0
AAGGGGCGTCGTGATA	ref_6049_new	0	0	0	0	0	0	0	0	0	0
TAATCTCGTGTTTCAT	ref_6049_new	23	29	16	19	26	24	40	22	30	22
CTCCACGCCTTGGTTT	ref_6049_new	0	0	0	0	0	0	0	0	0	0
CCTTGGGCAAATTCCT	ref_6049_new	13	16	19	21	19	10	17	17	12	10
CCGGGACATTTCGGCA	ref_6049_new	101	123	92	103	128	86	115	70	126	98
TTCGGGGCTGAGCTTG	ref_6049_new	27	44	37	25	40	29	41	29	46	16
TTAGGCCCCTCCCTGC	ref_6049_new	91	113	114	85	118	76	112	91	129	74
GGCCCGCTGAGCGGTC	ref_6049_new	8	20	17	10	7	17	14	7	8	13
GTCACGTAGGCCATCG	ref_6049_new	73	81	104	66	97	67	102	63	91	67
GCCCGTATGGCGACTG	ref_6049_new	19	33	16	12	31	12	23	11	31	8
ACTAGCAATGCCTTGG	ref_6049_new	21	13	14	32	24	10	29	22	22	17
CATTCCAGCGATATAG	ref_6049_new	0	0	0	0	0	0	0	0	0	0
GGATAGGATCGTAACA	ref_6049_new	2	4	0	1	0	0	3	5	1	1
TTCTTGTAGTCAGTTG	ref_6049_new	0	0	0	0	0	0	0	0	0	0
CCAACAATAAGGGCTC	ref_6049_new	16	21	32	16	20	11	25	15	19	17
ATATTCGGGTCAGAAT	ref_6049_new	98	106	107	94	96	78	109	81	129	60
TGACTTCACTGTTGTG	ref_6049_new	33	50	62	59	64	54	42	43	46	34
GGGGTGCTGCGCTTTT	ref_6049_new	26	34	17	20	20	27	27	15	30	9
GTGGATATAGTTTACA	ref_6049_new	23	42	24	13	22	24	43	19	42	15
CCGCTCATTGGCTTCT	ref_6049_new	1	4	3	3	3	0	3	0	8	3
TCGAGAAAGTTTTGGG	ref_6049_new	76	120	101	80	177	70	188	84	186	64
CTAACGAACCTTGAAC	ref_6049_new	44	62	63	36	74	37	73	22	84	38
AAGTCGACGGTATGTT	ref_6049_new	11	18	10	18	14	13	10	9	17	5
ACGCCCGTATTCATTG	ref_6049_new	5	7	11	7	7	11	5	7	7	5
ATTACACCCTGGAAGG	ref_6049_new	43	78	64	51	56	50	75	40	59	58
AGGCTCCCGAGCGAGG	ref_6049_new	58	68	66	52	51	65	69	57	66	51
TTTGCCTGTCAGGCTT	ref_6049_new	156	254	177	166	226	154	244	134	244	158
AAGCCCATTCTAATAT	ref_6049_new	0	0	0	0	0	0	0	0	0	0
ACTTGCTTTGGCAGCG	ref_6049_new	0	0	0	0	0	0	0	0	0	0
CTCGTTGCTCTACTAG	ref_6049_new	28	57	38	25	54	16	62	24	68	18
TACAAGTCATGGTTGT	ref_6049_new	14	24	22	20	18	16	15	25	17	6
CCTCGGTTCTGTGGCG	ref_6049_new	6	15	6	5	9	7	9	4	13	2
TGCCTCGCGGACGATG	ref_6049_new	25	28	30	30	30	20	25	19	37	24
GGTGCCGATAACTGAG	ref_6049_new	6	7	4	3	10	8	8	7	3	4
ATTCCGGTGAAGTTGA	ref_6049_new	0	0	0	0	0	0	0	0	0	0
GGGACCGCTGCGTACC	ref_6049_new	2	1	6	2	5	1	3	1	3	2
CCCGCTAGAGCCTGGA	ref_6049_new	13	9	19	15	18	9	26	11	20	12
CTCTGGGGGTATCACT	ref_6049_new	14	19	11	9	15	6	19	9	14	5
TCTCATCCACCAGTTT	ref_6049_new	0	0	0	0	0	0	0	0	0	0
AAGTCGACTAGTAGCA	ref_6049_new	0	0	0	0	0	0	0	0	0	0
GTCACTGACTACCAAG	ref_6049_new	18	31	28	29	22	20	19	18	28	18
TCTAGTTACCCTGATC	ref_6049_new	0	0	0	0	0	0	0	0	0	0
GGCAGACAACGCATTA	ref_6049_new	17	29	12	24	23	24	24	16	28	13
CTACCCAACGGTTTGA	ref_6049_new	5	16	14	10	10	4	25	9	14	10
ATGTACCTGGAATGTT	ref_6049_new	15	26	15	21	28	23	31	7	24	7
AGCGCAGGGCGCTTTC	ref_6049_new	9	15	5	6	7	7	14	10	9	8
ACCGCTCCCTCAGCAA	ref_6049_new	22	44	25	21	30	26	45	17	50	18
AAGCAAACGCATGTGC	ref_6049_new	72	79	83	92	118	71	81	90	96	69
CAGCGCGAACTTTTCT	ref_6049_new	0	0	0	0	0	0	0	0	0	0
GCTCCGGACTGATGGC	ref_6049_new	57	64	64	50	77	51	61	50	48	58
TACGCAGTCCCGCGTA	ref_6049_new	64	69	66	45	91	63	82	37	83	63
AGGATCAATATTGTGC	ref_6049_new	97	126	104	80	127	88	132	67	160	90
ATCATTGTAAAGGCGG	ref_6049_new	66	78	78	72	87	71	81	62	87	54
GAGCATTGTATAATTA	ref_6049_new	41	35	51	33	44	34	51	31	58	30
TTTCGTCCTGAATACG	ref_6049_new	10	9	22	22	23	16	22	7	10	15
GCGACCACCTCTTGTT	ref_6049_new	18	26	15	13	19	14	23	19	22	13
AATACCTAACAATCCA	ref_6049_new	0	0	0	0	0	0	0	0	0	0
GTTCCCACTTCCTGCT	ref_6049_new	0	0	0	0	0	0	0	0	0	0
ATTTCGGTTGTTTGGC	ref_6049_new	0	0	1	0	0	1	1	1	6	1
TGATCTATAATGTTCT	alt_3685_upstream	8	22	10	9	32	17	21	7	30	13
AAGTTCATCAAGCTAG	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGTTTTTACTGGG	alt_3685_upstream	5	8	5	6	15	8	14	2	18	6
GCGTGACCACCCATCA	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTGAGCTCCCATA	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTTCAGGACATA	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CCACGACCAGCCCACA	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
TACTCTTTTTTATGGT	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CGAAACAGCTACAATA	alt_3685_upstream	25	47	18	18	52	16	42	13	30	23
GGTTGTGATACAGTTG	alt_3685_upstream	19	55	24	23	59	21	56	23	59	25
GCGTCCGCCTCTATGC	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
GATACAAACAGCGAGT	alt_3685_upstream	1	6	2	1	7	4	5	3	7	1
TCGTATCGGTCAGCGT	alt_3685_upstream	0	4	1	0	2	3	3	1	1	5
CGTGGCTGCCTATTTA	alt_3685_upstream	22	38	34	17	41	26	44	26	47	12
ATGTAGGTTTACTCAA	alt_3685_upstream	39	93	50	37	87	44	115	41	99	39
TCCCGAGCACAGCCAT	alt_3685_upstream	22	17	12	16	30	17	28	9	24	16
ACCTATTCGGAGCTGC	alt_3685_upstream	35	36	25	28	56	20	64	20	58	19
TGAGCTTATCCATCTA	alt_3685_upstream	5	6	5	8	5	4	9	0	12	1
CTCAGACATCCTCGGG	alt_3685_upstream	2	2	3	2	2	0	2	1	3	0
AGAACGTGGTATCTGT	alt_3685_upstream	17	28	30	22	38	15	34	10	50	18
GTGAGGTTGGATCGAG	alt_3685_upstream	22	43	27	14	46	19	48	19	49	15
TACTCACCTGGTGCGC	alt_3685_upstream	0	12	1	0	9	0	9	1	16	0
GCTCTCTTCCGCTCCC	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTCCGCAAAGATG	alt_3685_upstream	2	10	4	3	5	1	13	5	2	4
GTTCCCGTCACTAGCG	alt_3685_upstream	54	132	37	55	154	48	170	59	176	51
CATTATGTTGGTCAAC	alt_3685_upstream	32	70	49	30	89	37	82	23	68	32
GTGGCGATCAAATTCC	alt_3685_upstream	2	4	2	5	6	1	3	0	4	0
AACGCAGTGAAACGTG	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CGAAGATTGGAACGGT	alt_3685_upstream	45	80	46	40	72	40	82	37	95	48
GGATTGCCGCGCAACA	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
TATAATTTTATACTTG	alt_3685_upstream	18	40	25	22	35	21	43	16	44	21
AAAATCGGCCGCCCCC	alt_3685_upstream	5	7	10	3	8	4	12	5	22	10
ATCTGCTCCGTTTAGG	alt_3685_upstream	14	15	23	7	27	8	21	5	29	15
TGAGCCTTGCCTCAGA	alt_3685_upstream	6	15	11	9	10	2	27	3	20	6
ATATGGGCGGTCTTAA	alt_3685_upstream	11	25	15	4	29	15	41	11	17	14
CATACCCGCTTGAATA	alt_3685_upstream	35	65	32	37	72	19	71	25	78	22
AAAATTGATCGACCAT	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
GATGTACGCGACTTGC	alt_3685_upstream	19	29	16	8	28	20	37	7	38	9
TAATCTTTCTAATCAT	alt_3685_upstream	77	182	107	76	161	86	151	76	162	58
AGGGAACAATGAACGA	alt_3685_upstream	19	39	28	32	51	28	29	25	51	19
TTCACTCTCGCCTAAG	alt_3685_upstream	16	48	31	17	42	20	30	21	37	13
GAATCATATCGAGTGC	alt_3685_upstream	15	33	16	10	21	11	35	16	33	8
GCGTAGGCGTTACATT	alt_3685_upstream	44	103	43	46	101	52	112	42	94	35
CTACCTAGATGGCAGA	alt_3685_upstream	32	78	46	49	76	45	73	35	90	19
CGTTTCTGGATACTCT	alt_3685_upstream	6	17	6	4	9	7	17	4	15	6
ATCTGCGCAGAGATGC	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTCTCAATTAATC	alt_3685_upstream	1	3	0	0	2	0	6	0	3	1
GCCTAGCTTTCAGACC	alt_3685_upstream	19	37	19	12	40	17	38	18	43	17
GCCGATAGCCAATCGT	alt_3685_upstream	21	47	32	33	45	24	61	15	70	17
GTAGACGTATACCAGG	alt_3685_upstream	28	57	35	26	60	31	56	40	73	15
CTGACTTCACCGATGT	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTCTCGGCTGGAT	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCCTGTATGTCTA	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGCTATCCTAGGC	alt_3685_upstream	2	5	3	4	5	7	11	1	13	4
GATCGGGCCTCCGGCG	alt_3685_upstream	8	13	12	10	5	10	12	2	10	3
AGTACCTCATCTTGAC	alt_3685_upstream	13	27	13	14	31	15	29	15	18	12
TCGCTGGAGTGTCTGT	alt_3685_upstream	4	4	4	2	5	4	7	2	8	1
TTTATGATCCATTTAA	alt_3685_upstream	7	5	8	3	12	7	3	3	14	8
AGCCACTAATGCCCAT	alt_3685_upstream	18	52	18	15	45	18	44	10	55	13
TGTTTCCATTAGTTGC	alt_3685_upstream	14	19	22	14	27	10	33	19	38	16
ACAGCGGGCTGTGCAG	alt_3685_upstream	20	28	18	7	41	14	26	19	36	18
GATAGGTTGCTCATAA	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGCAGTTGCTCCT	alt_3685_upstream	12	37	20	16	28	24	37	28	50	17
TCTATGGTGATATACC	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CACTCCCGATATACGT	alt_3685_upstream	0	2	0	0	1	0	7	1	4	0
CGTTTCACTTTATTAG	alt_3685_upstream	9	15	20	18	24	11	21	15	26	19
ATCCATTGTTAGCCTT	alt_3685_upstream	12	17	15	14	24	18	34	16	18	16
TAGCGAATTCGCAGGT	alt_3685_upstream	79	146	82	62	118	66	140	51	151	64
CGCTGGTTTGTTATGT	alt_3685_upstream	19	50	25	26	42	20	60	31	54	27
GCAGCCGGGTATGACA	alt_3685_upstream	6	6	2	4	8	7	12	2	13	1
GGATGCACATCCGCTC	alt_3685_upstream	6	16	9	10	20	5	22	8	18	8
CCCTTCTAGCGAGCAA	alt_3685_upstream	3	8	7	4	8	6	11	3	5	4
AAGTGGTGCAATGTGC	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCACACATCTTAA	alt_3685_upstream	12	22	7	5	11	6	14	6	21	4
CCTGCATTCGGTCAGC	alt_3685_upstream	4	9	4	2	8	2	10	2	5	3
CAAGCCAGACCAGTGG	alt_3685_upstream	4	10	2	2	4	1	9	2	9	2
ATGAGCCAGGAATTTA	alt_3685_upstream	4	10	7	1	26	11	12	2	15	1
TATGGTGGCGGTTTGT	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCATTTCGGCATT	alt_3685_upstream	21	23	23	11	23	13	21	14	32	9
CCGCGCGACGGTCTAC	alt_3685_upstream	10	31	5	8	27	5	11	10	29	4
TACTATCGTCTGCAAG	alt_3685_upstream	7	22	10	14	24	9	36	10	25	4
AACGGTTTGAGATCAT	alt_3685_upstream	34	54	31	23	50	27	58	21	43	14
GCTCACTTGGTATCAG	alt_3685_upstream	4	22	6	2	21	11	20	4	16	4
TTCTCTTTTTTGTTCA	alt_3685_upstream	11	37	23	25	34	14	33	23	29	24
TCTGATCTTGGTTCTT	alt_3685_upstream	21	31	21	17	40	15	31	19	37	7
GTTACTAGGTCTCGGT	alt_3685_upstream	13	18	13	14	15	7	17	13	10	5
TCTTCTGCTGGATAGG	alt_3685_upstream	39	67	49	38	68	32	66	25	89	41
GCTTTACTGCCTTTGC	alt_3685_upstream	43	82	42	36	75	41	100	29	114	35
CTGGACTGCGGGGAAA	alt_3685_upstream	5	11	9	6	21	14	18	5	16	12
ATTCAGACGCGCAATT	alt_3685_upstream	24	83	36	28	84	32	95	23	85	22
ATGGTCAGGGCCCAAA	alt_3685_upstream	14	12	12	12	24	16	19	6	28	13
ACTGTACGGATTAAAG	alt_3685_upstream	6	19	7	2	17	8	14	10	15	5
CCCATGTCTCTTAATT	alt_3685_upstream	3	17	15	11	23	7	17	8	24	2
GGAGCGTGAGCCTGAT	alt_3685_upstream	25	24	19	17	28	12	28	25	35	25
ATTGCACTTAACTAGG	alt_3685_upstream	4	2	5	3	10	1	2	2	8	4
GCTTTTATGGTTACCG	alt_3685_upstream	2	4	4	2	5	2	1	0	5	1
CACGTCAGTGTGGACC	alt_3685_upstream	36	91	53	40	82	41	94	33	111	41
TGATCTTGGTGCTGCT	alt_3685_upstream	12	23	11	18	25	9	25	13	20	10
CAGTTCTTCCGCAGGC	alt_3685_upstream	29	55	43	42	79	25	68	19	55	30
CTTTTCTGAGTTCGGG	alt_3685_upstream	32	82	33	22	63	23	68	20	59	24
AAATACATCGTCGAGA	alt_3685_upstream	52	114	57	64	148	48	129	56	121	67
GGTCCTCATCCATCCG	alt_3685_upstream	50	73	51	40	98	39	90	31	79	39
TGGTACTTAATCTAGG	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCGATTACCATGC	alt_3685_upstream	1	1	0	0	3	0	6	0	3	0
ATTCTACGTCGGTTAA	alt_3685_upstream	7	32	17	14	25	9	30	12	25	6
GTCAGCTTCACTGCGT	alt_3685_upstream	4	12	5	4	10	6	9	1	10	2
CACTTTGGTGAAATAT	alt_3685_upstream	0	1	6	2	0	1	6	0	5	2
ATCCCTCTTGCGGGGT	alt_3685_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTGCCTCTTGTCG	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
TGTGCGACGGAGAGTC	alt_2037_negative	50	68	66	42	119	47	112	67	105	57
TACAATTTTCCGTATT	alt_2037_negative	21	46	27	23	44	17	41	15	45	16
AAATTTTGTTTTAACT	alt_2037_negative	19	24	16	13	33	20	30	17	20	9
TTGCACCTTAGTGTTA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CACATATGCGATTATG	alt_2037_negative	11	34	10	19	23	9	38	20	32	12
TTGAATCTTGCGGCTG	alt_2037_negative	1	0	0	0	0	0	1	0	0	0
TGAATCCAGCAATGAT	alt_2037_negative	13	26	18	15	20	11	17	7	21	11
ATCATGGGACAGATCA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GGAACCAGTAGTCTCC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GTGATAGCGTGACTAT	alt_2037_negative	6	9	12	2	14	2	17	2	13	5
CTTATTTTTGCTCGAC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CGTGCTTGTATAACGA	alt_2037_negative	2	12	10	5	11	4	15	4	14	8
GATCTTAGAGCCATGC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GTCCGTTCACTGATAC	alt_2037_negative	11	46	18	14	40	4	41	7	55	11
AGGACATGCGAGTGTA	alt_2037_negative	11	9	6	3	22	8	14	7	19	2
TCGAATGCTTCTGAGA	alt_2037_negative	53	100	60	42	93	58	126	50	128	44
CGGGTTCTGCGAATGG	alt_2037_negative	33	47	33	36	36	39	38	25	53	29
GTAACTACACGATGTG	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CGATAGGGCTACTGTA	alt_2037_negative	44	83	50	45	94	27	78	34	97	29
CATTTGGTGCATTACT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
ATTGTCGCCTACTATT	alt_2037_negative	26	55	34	21	43	22	39	26	58	23
TAGTGCTTCGGACCCC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CCCAGCGCTCTCGATT	alt_2037_negative	15	34	23	17	35	15	40	13	47	10
ATAGGATATGTATGAC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
ATTTTTGCCGCCTCTT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
TAGGGTACCTTTGGAA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
TAATGTGCAGCGTGTC	alt_2037_negative	11	26	17	7	24	5	24	8	17	13
AGTTTAAGCCTTATCG	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GTGTTGATTGGAGTCT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GCGGAACGCAGAAGAT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CTCCGGGCCCGGGAAA	alt_2037_negative	5	8	5	3	8	2	5	3	4	2
CTGGGGACCCTATTCA	alt_2037_negative	35	22	29	37	42	31	34	28	43	20
AGGAAACAGGCGAGGA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CTCGTTTATAGGTAGA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GGTAGCACCACTGACT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
ACTTTTACGCGACCGC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GGCCGTTCAGGTTCAC	alt_2037_negative	21	32	33	26	54	27	62	23	54	25
CTCGTCTGGCTCAGTT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GATCCATCGTACTATC	alt_2037_negative	4	54	10	12	52	7	64	9	44	6
TCTCTTTCACGGGATG	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
AGTCTCTACGATGATT	alt_2037_negative	45	54	50	31	72	38	83	32	56	30
AAGCGGCGTAAAGCCC	alt_2037_negative	26	63	40	53	78	29	47	30	61	27
ATCCCGTGATTCATGG	alt_2037_negative	2	9	2	4	9	5	5	8	8	3
GATACTGGTAGCTACA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CTTCTTCATTATACAT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
TCGCAATTTGGCTATG	alt_2037_negative	10	23	29	13	21	15	27	12	42	12
GGATGGTTATTCAGGT	alt_2037_negative	5	13	7	0	7	11	12	2	10	8
TTTTAATGTCCATTAA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
TCGCCATGATCCTTTT	alt_2037_negative	2	5	2	4	4	3	1	2	5	1
ATGCCAAATGAAGGGA	alt_2037_negative	7	19	10	5	16	8	17	7	13	5
GTACCCTTGTTCAATC	alt_2037_negative	1	8	5	2	2	3	6	2	4	2
GACAGTGAGAAACGCT	alt_2037_negative	6	4	3	3	6	3	3	1	9	1
TTCAATGCCACAGATT	alt_2037_negative	91	196	119	113	163	68	187	115	186	89
TATTCGGCCTTATGTG	alt_2037_negative	30	42	28	25	70	22	72	22	57	30
CTATCGATGTAGTTTG	alt_2037_negative	26	52	38	26	47	28	47	25	78	31
AACCTAGCGTATAAGT	alt_2037_negative	6	25	9	5	21	6	13	3	28	6
AATATAGAGTTTCTCC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CAGGACAACGGTCCCA	alt_2037_negative	9	16	8	11	26	8	24	8	26	4
GTGCTTACTATCAGGA	alt_2037_negative	15	27	9	15	39	9	31	14	39	16
GATTCATAGTCTTTTC	alt_2037_negative	20	47	26	20	35	30	42	22	39	25
CCGATAAAATCTCTAC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CCGTAGCGCGTTACAG	alt_2037_negative	58	57	42	36	65	27	52	37	94	27
GCGGCTCGTGTCGTGC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
AATGTTTCCACCCGAA	alt_2037_negative	2	3	2	2	9	0	6	1	6	2
GTGCTCGTGCAATGCG	alt_2037_negative	28	54	28	34	59	29	58	20	66	24
CGGTTTTTAGCCGGTC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GTTGAGTACATATTCA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GTAAGTGAATCTGCGT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CTACTCTTTAGTTTCG	alt_2037_negative	15	17	10	15	26	8	19	9	19	8
ATCATCAGCAATGCGA	alt_2037_negative	22	37	25	14	36	15	36	16	30	16
TGTGGCTTCAAGAGTC	alt_2037_negative	31	32	20	16	30	22	41	16	40	11
CCTACACAGTGCGCCA	alt_2037_negative	6	11	12	9	18	5	19	10	8	6
CACATGTGGCCCACCA	alt_2037_negative	4	22	7	11	23	6	29	5	22	6
TATTTACTGTATGCTG	alt_2037_negative	36	89	45	32	87	27	100	48	78	40
ACTGCATTCTGAGGAG	alt_2037_negative	26	75	35	38	58	43	69	31	74	29
AGAGTGTCTAAAAAGG	alt_2037_negative	13	28	15	10	21	12	20	13	41	15
TTGTTAGGTTGGCACT	alt_2037_negative	1	0	2	2	6	1	5	0	4	0
TTGCAGGTTCCTGTGT	alt_2037_negative	3	2	0	1	1	2	3	2	4	4
CCCGACGATAAGTTTA	alt_2037_negative	60	100	66	35	101	46	100	44	96	41
CGTCCCCACCCACTGA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
TCATTTCTGTCCTCTA	alt_2037_negative	18	22	20	11	16	11	22	19	18	11
GTCTGAGCTCGGATCT	alt_2037_negative	2	7	3	3	6	4	8	3	6	1
TGTTATTATCCAGTAT	alt_2037_negative	0	10	7	3	7	3	7	3	10	0
ATCTTGAATAACAAGC	alt_2037_negative	33	65	59	30	63	28	70	34	75	33
TTTATATCGGGATACT	alt_2037_negative	10	19	10	11	21	4	16	11	19	2
ACATCGATTATTATTA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CAGATCGAGGTCGCAT	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
GTCTGTCGTGACCTGC	alt_2037_negative	6	13	5	8	10	6	16	2	9	1
ACGTGTCCACCGCAAC	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
TTAAGCGTTTGCCATG	alt_2037_negative	12	30	13	9	18	16	40	15	28	12
TTTCGTTCACAATGAG	alt_2037_negative	15	32	20	21	36	12	39	12	24	19
TAGCGCCTCCTTGGAA	alt_2037_negative	0	0	0	0	0	0	0	0	0	0
CACAGCATGCATTCGC	alt_2037_negative	3	6	3	1	4	5	4	1	9	0
TATCGAAGAGCCCTTG	alt_2037_negative	5	7	1	3	7	3	8	5	7	4
GGACTCAACATACCGA	alt_2037_negative	5	7	6	3	13	5	16	6	14	7
CTCCTACTGGTCAGAA	alt_5752_new	63	38	58	54	32	56	29	45	24	59
GGTTCGCTGTAGTTTG	alt_5752_new	44	32	52	35	32	37	28	37	38	25
TCTGATGTTGATCGTG	alt_5752_new	14	21	26	16	29	15	18	13	28	8
ACCTAGACAGTCACTG	alt_5752_new	3	1	3	2	3	0	2	3	1	1
TGGATCATGACTTTCG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TGTTCCTGACACCGCG	alt_5752_new	48	31	72	53	38	57	50	48	27	33
ATGTATTAGGAGCCGG	alt_5752_new	35	41	46	46	45	51	34	49	29	49
ACACGACGTTAGTTTA	alt_5752_new	7	6	7	6	7	10	5	9	3	9
TTAGTTTATTTAATGC	alt_5752_new	22	15	31	16	19	26	15	26	16	19
AGAGCCTTCTTACGTT	alt_5752_new	17	14	46	21	22	25	22	27	19	28
TGAGGTACTAGGCTGT	alt_5752_new	75	40	60	69	27	73	47	60	44	56
GGTGATATTTACTGGC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TTTGAGGGTGTTATTG	alt_5752_new	160	98	193	162	89	158	118	155	126	118
TAACCATATCCCTGCT	alt_5752_new	21	6	21	23	12	21	15	27	13	20
TACTCATCTCAACCGC	alt_5752_new	3	1	3	2	0	3	1	3	1	2
GACTTCATCTGATACC	alt_5752_new	155	62	178	161	85	146	90	131	84	109
CCTTTTATACTTGACT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TTTCTCAGTCGCGATT	alt_5752_new	81	59	120	105	79	82	49	86	68	84
TCGGGTATCCTGCTGG	alt_5752_new	52	23	48	56	30	54	20	34	19	48
GGACCCGGCTTCTTTT	alt_5752_new	27	30	51	44	28	30	25	30	26	37
AAGTAATCGACTCCGG	alt_5752_new	56	39	57	44	36	44	30	56	41	48
CGGAACATTGTCTTAG	alt_5752_new	83	55	105	67	61	88	60	82	58	70
TATAGAGTACCCGCTA	alt_5752_new	36	17	28	23	17	30	18	28	23	23
TTAGGGATAAATGTGT	alt_5752_new	34	30	44	26	33	21	22	34	30	27
ACTAGGTCGGTTAAAA	alt_5752_new	72	49	92	78	49	55	36	74	46	57
CTTGATGATGGGCGGT	alt_5752_new	152	79	161	153	79	145	90	112	86	122
GGGAGGTGCATAGTCA	alt_5752_new	33	23	56	35	21	40	28	29	24	50
ATATCGTGGTGCAATC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GTTACGCAGCGTGGAC	alt_5752_new	110	88	152	122	94	117	87	111	121	111
ACAGGGACCTGCCAAT	alt_5752_new	24	17	30	33	20	28	28	26	17	22
AACGTCGCCTAGGGGA	alt_5752_new	138	101	216	182	95	137	128	144	98	125
GACACGTAGTTCGTGT	alt_5752_new	79	70	119	104	69	92	64	80	67	76
TCTGGAAACAGGGAGC	alt_5752_new	14	20	10	14	10	14	18	11	20	10
CCTGTTTTTTCAAGCG	alt_5752_new	50	38	54	57	33	48	43	49	39	35
TGTGACGAGCGATTGC	alt_5752_new	21	18	28	38	16	36	17	16	10	21
CCCGAGGGCTTTCCCG	alt_5752_new	34	17	54	35	19	39	23	29	27	33
CGTGATCCTCAGTGGT	alt_5752_new	19	15	23	26	15	18	13	13	19	24
TCAATTCTTGATGAAA	alt_5752_new	11	9	17	23	13	11	10	14	10	9
TGCCATATCCGCGTTA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
ATGGTGATGACTTCAA	alt_5752_new	11	9	18	10	2	9	3	8	9	8
GACATTCTGGTTGTGC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CGTTTTTGCAGGTCAT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
AATTCTAGCTTTATCA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CGAAAAGATAGCCGTT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GGCATACAAGGGATCA	alt_5752_new	9	12	16	7	6	14	9	10	3	5
TGGTCCATCCTTGGGT	alt_5752_new	83	61	99	100	65	70	54	83	66	76
TTATACCCTTTTACGG	alt_5752_new	55	28	63	44	30	42	25	40	23	48
TACGGTGGGGACTCGT	alt_5752_new	13	9	26	11	14	12	5	10	7	15
TCGTTGTCAGCTGAAA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TGCCCCTCGTAAATTC	alt_5752_new	51	31	75	68	33	46	39	53	20	47
TTTTCCTGTAGTTTAT	alt_5752_new	5	3	7	0	1	5	2	3	2	5
AGTTCGGGTACTAGCC	alt_5752_new	2	4	5	2	1	5	5	3	3	2
GTGTTTGGACGGAAGT	alt_5752_new	16	8	28	17	9	16	17	10	19	15
GCGCCATGGTTTTTTC	alt_5752_new	138	83	136	129	106	121	88	127	99	127
GGGATCGACTGGGCTG	alt_5752_new	33	38	49	42	32	39	52	33	60	24
CTGTTAATGCATGTGT	alt_5752_new	20	16	37	22	12	26	12	24	16	34
TAATTGTTAACGTGCG	alt_5752_new	15	4	27	10	17	11	13	20	10	11
AATCCTTACATATTTC	alt_5752_new	87	46	89	82	42	75	60	67	40	64
GAAGAACTCGCTGGCA	alt_5752_new	255	174	317	305	139	269	198	231	182	242
AAGTCCGTTCCGTCTG	alt_5752_new	4	1	5	3	5	3	2	6	1	4
CTTTAATCTTTGCCTA	alt_5752_new	43	18	43	51	24	41	25	45	29	30
AGGCAATGCCATACCC	alt_5752_new	7	1	7	5	10	6	6	5	0	7
TAATACGCGGAGCTCT	alt_5752_new	67	47	80	47	41	50	33	60	41	53
TTATAACTGGGCGCCA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CGCTTTTGAGCACCTG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
ACGGCCCGGATTATCT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TATTATTTAACTGTGT	alt_5752_new	1	1	1	1	1	9	3	5	1	2
GCCGGGCTTTGGTGAT	alt_5752_new	25	14	27	37	26	42	21	19	23	29
ATTGGATTTCTCTACC	alt_5752_new	35	24	47	22	29	49	45	37	55	48
AGGCGGGTCTGAGATC	alt_5752_new	263	161	329	278	155	290	173	243	171	241
ATCTTCCAGCTCCGTT	alt_5752_new	85	45	89	74	59	66	55	54	44	63
GGCCTCCGTGTCAGAA	alt_5752_new	106	68	108	92	58	95	52	84	58	69
GTGCCCAGGTGATCTT	alt_5752_new	88	50	130	91	57	92	47	69	63	69
TGATGCCTCATAGCAA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TGCGTCCTTTGTATCC	alt_5752_new	91	87	121	123	79	115	99	92	87	90
AATTAGTCTTCCTGTA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
AAGCTAGCAGGGAACC	alt_5752_new	54	56	85	49	32	72	44	56	57	56
TTATATGTGAATTGTT	alt_5752_new	14	9	10	16	10	19	11	10	5	13
TGGGGCATACATTTAC	alt_5752_new	185	103	235	179	112	152	108	170	116	170
ATCAGCCTGCGGAGCG	alt_5752_new	84	32	119	86	57	83	65	88	67	90
GTCGCTGTTAGTACCC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TTTTGCTCTAAGTCTC	alt_5752_new	12	7	17	7	10	5	12	8	7	17
TTCTGTTCACCAGCAT	alt_5752_new	12	12	20	18	16	16	15	26	13	13
TGAATCTTTCCGCCTC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
ACGGCGCGATAGGGCC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GCCCTTTTCGGGCTAG	alt_5752_new	80	67	111	94	59	92	81	99	80	82
GTAGCACCTGACTAAC	alt_5752_new	35	28	47	36	21	45	25	30	29	33
TTTCTATTTATAGTTT	alt_5752_new	25	19	30	20	18	14	27	19	22	22
CTCGTTGGTCTCGGCT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CGTCGCGCATCAGAGC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
ACCATGGAGCTACCCA	alt_5752_new	9	4	19	18	13	11	8	6	8	19
TTATTCGTAATCCCCT	alt_5752_new	25	16	37	36	26	36	26	25	11	23
AACTCCACCTTTAACC	alt_5752_new	34	17	51	27	26	33	36	27	33	21
TCCTGCCGATTCGACG	alt_5752_new	23	18	31	23	13	23	15	22	9	21
AACGAGCTTCTACTGG	alt_5752_new	48	37	82	54	31	50	49	50	43	41
CATGCTGCACCTTGAT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CACCGCCGTCATCACA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GCTCGTACAGTCCACC	alt_5752_new	41	19	48	57	27	48	36	31	32	31
GATGTAATATAAAGTA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
ATTTCTAGCTTTATCA	alt_5752_new	149	107	185	180	142	151	105	134	127	121
CGCTGCCTTCGAGTTG	alt_5752_new	47	35	85	61	45	48	50	63	50	40
CCCAACTTTAAGGCGG	alt_5752_new	46	19	75	48	34	50	25	53	46	67
TCGCGGGCGGCACCTG	alt_5752_new	66	25	64	69	36	52	21	34	45	49
GGGGCGCCGTAACTCC	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CCCCCACATTGGGGTT	alt_5752_new	36	28	42	47	32	43	18	22	26	39
GTGGCACCCCTTTCCA	alt_5752_new	140	94	196	167	70	140	77	131	103	158
TACCAGATCGTCTAGA	alt_5752_new	8	5	12	5	0	6	7	10	4	8
GATCGTTAAAGACCAG	alt_5752_new	37	22	38	30	29	17	34	29	33	36
GGTCGTGAAGCCGGTG	alt_5752_new	94	60	131	122	78	101	61	96	70	96
TTCGTCCGAGGTCATT	alt_5752_new	159	129	210	175	95	142	147	131	103	147
TGTTTAATCCGCACTG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TGCACTACAGCGTTTT	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CGCGCGATAGGGGCTG	alt_5752_new	17	11	22	21	9	13	11	18	11	17
AGCCATTATGTGAAGC	alt_5752_new	28	17	19	20	6	19	16	19	8	17
CTCGTACACTGGACTG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TTCATCTTACAATCCT	alt_5752_new	44	23	32	44	34	40	21	41	25	30
GCGCGTTCTGCTAATT	alt_5752_new	70	43	74	68	40	68	40	72	48	63
ATAGATGTCTGTTTCC	alt_5752_new	26	11	25	41	23	25	20	28	27	24
CTTTGGAAACCATAGG	alt_5752_new	168	113	178	155	125	147	133	132	151	131
ATTTCTAGCGGTTTCG	alt_5752_new	25	14	25	23	21	17	13	26	29	27
GTAAGTTGGTCTGTTA	alt_5752_new	10	14	27	20	5	23	12	17	16	27
ATTAGCATCCAAGTTA	alt_5752_new	36	16	55	31	22	45	25	29	24	28
TCTCACTTGGCCGGCG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GCATAGCTTCGTGCCC	alt_5752_new	13	18	19	15	14	21	6	28	17	11
CGTCCTGACCAATAGG	alt_5752_new	42	45	66	48	42	44	57	55	61	50
TTGTTGGGGGGATTCG	alt_5752_new	21	13	29	28	15	34	13	35	19	25
GGGTAGCTTTGATCTC	alt_5752_new	105	72	133	119	70	93	73	116	88	100
CCGTGTGCATCTCAGC	alt_5752_new	204	133	260	240	154	185	149	234	157	205
CACTATTTTTGTGACC	alt_5752_new	25	26	19	22	15	24	26	22	26	23
CCTTGACGTCCTGTTT	alt_5752_new	0	3	0	1	2	4	1	1	0	1
CCGGCGGATTTTCGTA	alt_5752_new	14	29	25	23	31	21	43	26	42	24
CTGGTTACGCAATATT	alt_5752_new	12	11	34	13	9	18	12	12	19	18
CGCTTAGTGCTGGATT	alt_5752_new	23	13	22	25	8	23	19	10	12	13
GCCAGGGATCAAATGG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TCCTGACTCCCTTGTG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
TCCGTTATCTGAAATG	alt_5752_new	39	14	38	32	15	21	19	30	14	25
ATGGTTAAGCCTCACA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
CCGAACTTTAGTTCCA	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GTGCAATCCGTCCGAG	alt_5752_new	0	0	0	0	0	0	0	0	0	0
GACATACTATCTGGTA	alt_5752_new	19	15	20	21	12	14	21	20	14	18
TTTAGGGCTTGTGAAC	alt_5752_new	19	16	15	30	17	15	19	14	16	18
ATGATAAGCTAAGTTA	ref_1433_upstream	12	11	18	14	7	13	9	8	7	7
CGAAACTTCTTAAACG	ref_1433_upstream	20	22	25	27	24	27	22	37	24	25
GAGGACATTGTCCGCT	ref_1433_upstream	153	120	129	115	94	117	132	121	96	113
ACGACAGTGTGGGCAT	ref_1433_upstream	25	25	25	30	12	18	29	15	19	17
ACTTCAGTGGACGCTC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CATAAGTATTACGATC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCTAACTGTTCTTTGT	ref_1433_upstream	13	22	37	29	19	17	27	36	17	22
GGGGTCGCATTCAGGT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TAGGGGCGACCGCCAC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CTCAACAGGATAGCTC	ref_1433_upstream	41	42	43	30	34	29	35	33	32	32
CCCTGGTCTGTCAGGG	ref_1433_upstream	15	17	28	19	11	14	13	14	23	14
GTTCGATCGAACGTCA	ref_1433_upstream	38	36	35	28	53	24	31	44	36	25
TAAGTGCACCTGATGA	ref_1433_upstream	228	204	274	222	245	222	219	220	269	177
AACAGAGCATTCAAAG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCCTATTGTGCACTTA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCCAGATCCCATAGAA	ref_1433_upstream	33	26	34	37	31	20	30	28	26	14
GATCTCATGTAGCTCT	ref_1433_upstream	4	3	3	4	8	4	3	2	5	1
GCCAGCTTTTAGGTAG	ref_1433_upstream	1	9	8	6	15	10	13	5	18	7
GAACACTCGGAATCTA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TATGCACGTGGACATG	ref_1433_upstream	144	115	154	142	107	112	130	136	141	127
CTCTGGTATGCCCCGT	ref_1433_upstream	15	23	26	14	37	9	26	21	23	19
CGTATACTAGATCTAG	ref_1433_upstream	5	7	2	8	10	5	7	3	8	7
TTCAAATTGTAGCTCC	ref_1433_upstream	169	128	219	162	131	159	150	175	165	147
AGACCGGTTAATTGGT	ref_1433_upstream	41	31	30	28	27	21	35	32	29	13
TACACGTTACCACCGT	ref_1433_upstream	4	13	15	14	17	12	13	8	13	8
TTCTGTCAGTTTGTTA	ref_1433_upstream	53	46	70	67	52	58	73	57	58	51
ATCTCAATTGCCCGGA	ref_1433_upstream	17	5	15	11	11	15	14	26	13	14
TTGATCATTCTTCCGC	ref_1433_upstream	39	34	45	45	28	43	29	28	43	32
TTGATTTGTATATCCT	ref_1433_upstream	17	24	28	13	16	24	13	13	16	13
TCCTGCATGAATCCTG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGACTTGCCATTTTAA	ref_1433_upstream	70	57	97	102	58	76	58	104	52	66
ATCATGTGTGCATAGG	ref_1433_upstream	51	48	63	61	53	70	65	47	62	45
TTTCGTTTATTCTAAA	ref_1433_upstream	0	3	6	7	3	6	1	3	8	4
GGGCTATTATGCTATC	ref_1433_upstream	24	29	22	17	15	26	17	22	27	9
CGCTCTTCGCGACCAG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCGAGGCCCGGGACTC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTTTCGATAGTGC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TACTATGCGGTGCTGT	ref_1433_upstream	67	73	79	72	63	73	93	80	94	72
TTGCTCGTGCTCTACA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGTAATCGGCGTCCAT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCTCTTAGCCAAC	ref_1433_upstream	29	19	26	18	27	27	15	21	32	28
CGAGTATTACCCACAT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCGGTTTTGGTCT	ref_1433_upstream	9	10	9	11	8	17	7	7	9	17
TGGGATATCTTCGGTA	ref_1433_upstream	1	2	0	7	1	6	4	2	1	3
CAGTTAATCGAACGTC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGGTACAATGTTT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCCAGAATAGATT	ref_1433_upstream	48	42	50	50	30	42	44	48	52	24
GATAATTTCGCTCTTT	ref_1433_upstream	47	27	43	35	17	33	34	38	18	36
ATGTCATATCCACACG	ref_1433_upstream	82	70	91	109	50	72	78	52	70	85
ACGCATTACATCCGTC	ref_1433_upstream	45	29	41	28	23	14	26	25	36	20
AGCTCGGGATCGGTAT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCATCACAATACT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CGTATGCTCCATCACT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCGCCGTTGTAGC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCTATGGGCAAATCAT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTCTCTTGGGCCT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCGGAGCGGCTCT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTTTCGGTGCCT	ref_1433_upstream	84	68	105	99	83	102	69	99	65	87
AGAACCACACGACGCG	ref_1433_upstream	9	25	12	20	26	16	23	22	23	20
GGAAGTGCTTCCATTT	ref_1433_upstream	73	47	73	73	57	64	52	66	58	75
TAGCTCCCCCCTGATA	ref_1433_upstream	32	42	41	26	35	28	42	39	36	22
GCTCGGTATAGGTGCG	ref_1433_upstream	4	5	13	8	8	2	4	6	6	6
TTCGTGCTCCGCTTCG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCATTAATTAATTCTC	ref_1433_upstream	3	1	6	3	3	1	1	3	5	6
TCAGGATTCTCGTGGT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTAAGAGGCGATC	ref_1433_upstream	17	23	28	17	18	22	23	17	19	20
ACAGGTTCTACAGCTC	ref_1433_upstream	43	44	57	53	54	34	55	35	71	38
GCAACCGTTCATCTCG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TACATTTACCGACCAC	ref_1433_upstream	82	84	100	92	93	76	90	83	96	76
TTAGGACCGTGGAGGT	ref_1433_upstream	15	18	31	26	17	28	14	21	24	34
GTGCGTAGGGCTATAA	ref_1433_upstream	42	53	71	42	53	46	42	42	51	50
CGTCCATCGCGCTAAA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCAAACTTTACAT	ref_1433_upstream	4	14	3	3	17	3	18	5	23	1
CGTCGGCTCCACAATT	ref_1433_upstream	88	64	133	89	86	96	93	96	96	86
CCACTCGTCAGAGTCA	ref_1433_upstream	1	6	6	5	5	2	11	5	11	9
AGTAAGTTAATATAGT	ref_1433_upstream	69	37	70	60	46	44	35	35	53	49
GGGGTGTGGCTGCGGT	ref_1433_upstream	31	29	41	32	33	22	44	28	51	28
TACTACCTGGATTTTT	ref_1433_upstream	71	94	96	111	95	90	83	86	90	76
AGACGTACATCAATGT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCGGCCTGAAGCC	ref_1433_upstream	6	9	7	2	11	4	7	1	3	3
GAGTATGTCAAGGTAT	ref_1433_upstream	35	38	51	39	34	46	37	31	38	28
TCAGTCCCTACGATCA	ref_1433_upstream	58	61	70	55	50	57	71	57	51	65
ATCGTTAATCACGCCC	ref_1433_upstream	40	37	50	40	41	51	36	46	32	41
GCCTGTAGAGCGATCA	ref_1433_upstream	10	15	19	13	10	12	13	15	12	18
GATACGCTGAGGCTCA	ref_1433_upstream	126	117	155	130	125	119	130	119	105	121
GGCGTAAGTAATAGCT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
ATTATATAGGTGTTCT	ref_1433_upstream	13	22	27	18	22	12	23	28	35	16
GTCGAACGCGACTTCT	ref_1433_upstream	19	23	32	26	19	25	17	19	26	31
CGGATGCTTCATACGC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCTCCTCTTACAT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
AGCGGATCTTGCACTC	ref_1433_upstream	27	13	23	35	26	17	32	29	16	25
TGAGCTGTACATCTTT	ref_1433_upstream	24	11	42	34	18	20	25	21	27	25
ATAGAACCGCATCTGA	ref_1433_upstream	34	37	38	27	32	28	41	29	29	23
ATGCTATTCAAGCTAG	ref_1433_upstream	8	9	8	11	12	7	7	9	6	8
TTAGTACTTTTTTGCA	ref_1433_upstream	27	29	23	24	24	18	33	15	23	18
TAGGTATAATCCCCTG	ref_1433_upstream	7	5	4	4	6	3	5	2	8	4
ATCCACTAAATTCGAG	ref_1433_upstream	35	15	16	18	22	20	18	21	25	15
TTCCTGTATTTTTACG	ref_1433_upstream	11	16	13	14	8	12	15	15	8	16
CCTCATACTATTACTT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TCCACAGTATTTCTTC	ref_1433_upstream	4	4	6	6	2	1	10	7	4	8
TAGAGCCCAGACTTCG	ref_1433_upstream	7	5	16	11	7	8	11	10	9	8
AGAACCATGCTGTTAG	ref_1433_upstream	40	36	33	34	43	22	41	27	41	25
CGCACTCTGGTCATCC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTTGTACTCATAT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCTACTCTACACT	ref_1433_upstream	16	21	16	18	26	17	18	7	26	18
CTTCATCCTGCTTCTG	ref_1433_upstream	38	49	58	54	47	56	33	49	52	42
GGCGTGCACCAAAATT	ref_1433_upstream	19	21	19	16	16	19	17	12	21	29
GTGCACTACAGCGCAT	ref_1433_upstream	41	36	48	31	43	39	31	37	52	35
AACTTCAACTTTGGGG	ref_1433_upstream	121	102	161	159	117	102	106	104	98	132
TGAGGCAACCTATTCG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGTAATTTACCCATCA	ref_1433_upstream	4	1	0	2	1	5	2	3	1	1
GTGTGAAAATTGGTGT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTGTCTCCACGC	ref_1433_upstream	739	646	966	796	702	765	644	708	685	663
AGCCTTCAGCGTCCTT	ref_1433_upstream	84	119	117	85	95	85	117	82	135	70
CAACAGGGCGTCTACA	ref_1433_upstream	26	17	29	20	22	13	25	16	17	12
ACCTGACGTATGGTGT	ref_1433_upstream	1	2	3	1	1	2	1	1	1	3
GTTCGTGCACTCAGTA	ref_1433_upstream	41	44	39	64	37	43	37	58	55	37
ACTTTCGTATGGCTCT	ref_1433_upstream	75	77	86	78	51	60	62	73	53	59
ACGTAACCGTTGTCTA	ref_1433_upstream	100	92	121	125	100	96	110	91	90	80
ACTTCTTTGTCGTGGA	ref_1433_upstream	31	17	25	28	27	19	21	24	28	27
ATGTCGAGTTTTTATC	ref_1433_upstream	43	42	40	49	37	55	37	45	39	54
CAATACGGTCCATAGA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CATCTACTTTCGGTAC	ref_1433_upstream	53	39	62	70	47	37	59	54	53	53
CTGCCTGAGACGCTTC	ref_1433_upstream	1	1	5	6	2	2	8	5	1	3
CAATTCGTAATTCGAC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GACGTATGCAGTGGCT	ref_1433_upstream	42	29	50	39	43	33	49	38	34	35
GCTAGATCCTTCTGAT	ref_1433_upstream	27	16	33	25	37	25	28	24	25	23
GTAAGAACTGGCGCGT	ref_1433_upstream	5	3	0	4	2	3	1	2	5	5
TGTATCAGTTTTGATT	ref_1433_upstream	27	34	47	30	24	33	29	28	40	40
CTGGCGATTGCCCGCT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCACCATCTTTTC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CAAATCACTCCTGTTC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CAATTTTCTATGGTAC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CTATTAAGCGTACGCT	ref_1433_upstream	6	5	19	7	9	2	9	5	8	11
ACTCTTTTCGTGCATA	ref_1433_upstream	10	11	16	1	10	14	11	8	19	6
ATAATTGTAGGGGTTC	ref_1433_upstream	12	15	22	19	15	26	19	19	17	14
TACAACTAACTCACTG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGCTAACTGATT	ref_1433_upstream	130	132	157	133	127	114	119	120	142	112
GTCTCGCCCCAAGCTG	ref_1433_upstream	62	63	117	96	66	77	82	80	81	72
CCGTAGGTTGCTGCCC	ref_1433_upstream	76	79	95	90	77	91	54	64	82	53
ATCCATCGGGCTATGG	ref_1433_upstream	115	105	130	139	102	113	91	82	114	106
GCATTTCTACAAGTAG	ref_1433_upstream	0	3	3	4	5	4	1	0	1	3
GGTGTAGCTGTCGGCC	ref_1433_upstream	5	10	13	14	12	5	8	5	13	8
TCGAGAACATCTAGGG	ref_1433_upstream	19	28	20	13	14	13	16	15	18	8
GAAACGTTTAATACGA	ref_1433_upstream	20	11	14	7	18	22	17	15	22	16
CTCCCGGCATCGACCA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
AATAATGATGTGTTAC	ref_1433_upstream	12	10	20	18	25	10	19	14	17	4
GTCTTCCTTTTGTAAC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCTACAAGCCTCC	ref_1433_upstream	95	99	103	75	90	79	87	65	87	77
TTCCGATAATAGGACT	ref_1433_upstream	0	0	1	2	1	0	2	3	3	3
CCCCTTATTAGCACCG	ref_1433_upstream	81	108	123	104	91	106	99	100	118	91
CTCCTAGAGAACGTCA	ref_1433_upstream	19	9	18	14	12	13	14	19	14	15
AATGTCTACTTGTTCG	ref_1433_upstream	4	10	4	2	8	8	7	11	8	4
GCCTGTTTGTGCATCT	ref_1433_upstream	106	155	167	135	187	97	184	126	144	108
GCATTTCTCGGAAGTT	ref_1433_upstream	32	25	30	22	24	23	16	18	26	20
CGCTCATTCTAAGGCC	ref_1433_upstream	52	31	59	58	47	53	38	51	42	43
GGAGCAAGGTTAGTGG	ref_1433_upstream	35	26	28	14	17	30	19	22	43	16
CCGTTGATTATGAGAT	ref_1433_upstream	77	51	108	68	59	56	62	85	71	47
TCGCTTTGTCCTAAGG	ref_1433_upstream	53	45	73	50	48	50	54	37	66	43
TTAGGTTATGCAGATA	ref_1433_upstream	6	6	14	10	11	14	4	9	10	7
GACCCCGGCTGGGTTA	ref_1433_upstream	52	21	51	43	29	44	29	35	40	39
CTGTAATTGTTTGCGG	ref_1433_upstream	33	14	31	27	22	29	30	21	22	22
CTCTGGTGTATCGGGT	ref_1433_upstream	0	1	3	1	0	6	2	2	2	5
AAGCCTCCTGTCGGAT	ref_1433_upstream	15	14	20	25	24	6	22	18	24	14
TCCAATATACTTCCCC	ref_1433_upstream	14	12	16	12	12	10	11	9	23	13
GCCATCCCAGAAGTCT	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGTCGGGGTGCGG	ref_1433_upstream	22	23	23	23	25	17	25	32	27	12
GGTCCTGATACTTCCG	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAAACAATCGTCG	ref_1433_upstream	190	181	250	235	169	187	191	201	185	167
TTTTTCCCGTTGAGAA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CCTATAGTTACGCACA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCACTTCCGTACC	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTTGGTACTCGCA	ref_1433_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCCTAGGTAGTAT	ref_1433_upstream	15	22	18	25	22	14	27	9	17	20
GATTTAAGCGTCAAGG	ref_1433_upstream	47	40	51	40	33	31	42	39	34	38
GTCACCCGGGGCTTCC	ref_1433_upstream	8	5	11	18	14	8	17	8	11	4
TATATATTATATCAGC	ref_5817_new	21	22	13	9	32	15	14	13	14	18
GCTTAAATGCCTAATC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GTTTCACATCAAATCA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
AGTCTTAATTTGACTG	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GCAGACATTTCCTAAC	ref_5817_new	3	9	4	3	6	3	15	1	6	8
GAGTGGCTGTCAACAG	ref_5817_new	4	4	9	4	9	7	10	4	9	6
TTATACGAGGACGCAT	ref_5817_new	11	12	10	4	10	11	10	15	15	11
ACTGGGTGTTAGTGAC	ref_5817_new	8	3	12	13	12	13	10	8	10	9
CTAGCTTTGCGGTGTT	ref_5817_new	9	27	31	19	38	10	23	22	35	14
TAAACCTCCAATCGAC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
CATACGCAATAACTAT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
AGAATGCAAGCAGAGT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
CGGAGATCTGGTTCTA	ref_5817_new	24	19	24	8	18	8	20	18	16	13
GATTGAAAGAGGAGGC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GGCCAAAACTATGAAC	ref_5817_new	9	17	15	13	16	9	7	9	16	12
CCCCGTTACTGGTGAT	ref_5817_new	10	3	7	4	5	2	6	9	6	1
TACCTCGCGTTGTCTC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TAGGAAGTATTCCTGA	ref_5817_new	9	27	25	15	38	14	22	21	25	12
GTTTCTGATAACGTTA	ref_5817_new	48	53	56	54	59	42	64	33	65	40
TTGGGCTGATCCCGCG	ref_5817_new	89	73	128	85	90	84	90	91	90	81
CGGCCGGTCTCTAGTG	ref_5817_new	51	42	30	37	40	46	62	35	45	23
ATCGAAGAAATATCGC	ref_5817_new	24	23	30	18	30	17	24	19	32	8
CCATTTAACTCTATAA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
ATCCGCTTCTCGTTTT	ref_5817_new	18	26	24	21	18	27	14	22	32	17
TCATATTTTTCCTAGG	ref_5817_new	4	8	3	3	1	6	3	6	4	7
ACCGTTGTTTCACTGT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GGTACCCGGCAAAGAT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
ACCGCTAATGCTGCAG	ref_5817_new	13	14	29	10	25	14	23	27	13	14
TGAGCGTGAATAGTAA	ref_5817_new	18	6	8	10	12	7	12	16	13	3
TTCTAAGATGCTGTCT	ref_5817_new	12	5	6	14	11	8	4	4	5	6
GCCTGTCTCCTCCAGG	ref_5817_new	111	157	140	132	156	102	195	95	152	82
AGGGATTCTTACCGCC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
ACACTCTCGCGGATCA	ref_5817_new	5	16	5	3	12	6	7	8	13	3
AGAACGACAGATCACG	ref_5817_new	26	33	21	32	34	25	38	23	29	23
CGACCGGTTCCATTCA	ref_5817_new	19	18	9	11	12	10	10	11	14	13
GGTCGCCCAATTTTGC	ref_5817_new	7	3	5	9	5	4	6	4	4	7
GTTGGTTGATTTTATG	ref_5817_new	12	5	3	4	3	3	5	2	10	4
TTTTGGTGTATCATCC	ref_5817_new	10	10	15	12	9	10	13	17	17	9
ATTAGTCCCTGGGTAT	ref_5817_new	8	8	5	10	4	8	6	7	11	5
GGTAGTAGGAGTTGCA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GTCGTATACGTCATCT	ref_5817_new	20	24	22	10	13	23	14	11	22	11
CGTCCGCCATGCCAGA	ref_5817_new	8	5	16	13	11	13	4	8	7	9
TTCGTGACTGGACGAC	ref_5817_new	14	27	22	25	23	16	34	14	28	11
TACAAGAATATTAGGA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
CACTTGCATTCCGACT	ref_5817_new	11	15	14	13	22	9	18	14	22	6
TCTGTGCACGGGTGCA	ref_5817_new	1	8	4	1	4	4	2	3	5	1
TAATATGTAGTTGTTG	ref_5817_new	6	16	18	7	12	17	14	13	10	10
TGTCATGTACATTATA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TTAATCTAGAACAGTT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GTATTAGATTGTCTAT	ref_5817_new	11	13	12	4	15	8	5	8	7	10
CGGAACCCCACGAGCC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
ATAGGATAGGTTAGAA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
ATCGACTGCTAGCAGC	ref_5817_new	31	30	18	24	41	18	45	20	31	15
TAAAGTTCCTCGAGGG	ref_5817_new	0	0	0	0	0	0	0	0	0	0
CCATTTAAGCCCTTAA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TAGCAAAGCGCGGGTG	ref_5817_new	12	26	17	12	21	23	24	14	16	14
CTATAGTCATAATCAC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
CTTCTGCGCACCCATA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
ACGGGCGTGTCTTTGG	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GATATGACAGCATAAA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TTTGAATTTGCAGCGC	ref_5817_new	23	23	21	28	22	23	22	23	26	16
AGATGGGATCACAGAG	ref_5817_new	49	37	63	53	60	39	62	38	67	30
TCGGATAGCGGCGTGT	ref_5817_new	8	17	6	5	9	13	6	4	11	9
TCGGGCTCATGGGCTT	ref_5817_new	32	46	41	36	53	28	44	33	39	34
GCGGTGGTCCTGGCTC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GACTGCATTGTTGACC	ref_5817_new	1	2	3	0	2	3	2	0	3	1
CTTATAGTCCAATAGA	ref_5817_new	34	57	56	42	59	36	58	33	56	36
GTCACAGTCGATGTCA	ref_5817_new	3	0	2	1	2	0	2	0	3	0
CTAATTGCTGCTGCCC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
CACCTATCTCTCCCGT	ref_5817_new	19	25	15	10	28	21	16	8	26	8
CATAACGTCTTCGGAC	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GCTGCTCACAGGTTAT	ref_5817_new	19	27	23	25	20	17	31	23	25	21
CCCGCCACGTAGGGTG	ref_5817_new	78	104	91	88	153	93	121	69	136	73
GGACTTATAAGTGAAT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
AGTTGCAGTTATGATA	ref_5817_new	14	12	11	6	11	11	11	13	8	8
TGGAGGACAGTGCCCA	ref_5817_new	13	21	16	13	27	18	24	8	23	15
GGCTGGTGTGACAAAG	ref_5817_new	0	0	0	0	0	0	0	0	0	0
AACTGTCGTGTACAGC	ref_5817_new	37	53	62	31	53	49	52	40	54	27
GGTATTAGTCTGCAGG	ref_5817_new	13	28	22	15	20	13	20	15	15	9
TCCAGACATCGCTATT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TGTTATCATCGAGGGT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
GATGTGACTATTTGTC	ref_5817_new	3	7	7	4	7	3	9	1	7	6
AAGCGTGTATAGGTAA	ref_5817_new	13	19	15	13	20	21	23	14	19	20
TGGGTGCAAGCCGGGA	ref_5817_new	3	3	6	3	3	4	1	4	3	4
CGTGTCGGTTCGTCAC	ref_5817_new	14	4	17	10	13	6	17	21	15	11
TCTCTCGCGCCGTTCG	ref_5817_new	7	8	4	7	5	6	9	5	12	2
TGATTCCCCCGGACCT	ref_5817_new	8	8	7	15	6	5	8	20	17	7
AGCGGGGGTCTTACCG	ref_5817_new	9	18	9	14	26	8	32	11	32	11
TCTTCGGTGGTTGCTA	ref_5817_new	19	27	45	27	42	31	37	37	38	27
ATCACGGATACTAATC	ref_5817_new	7	12	8	6	8	5	9	16	8	13
TTTCCATACGTATTAA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TTAGACAGGATTGTAT	ref_5817_new	46	58	50	52	49	37	58	55	65	43
AATGTCTCACGTCCTT	ref_5817_new	16	25	25	17	22	14	20	14	36	29
GCAACGCTTAAAGTGG	ref_5817_new	3	9	7	3	15	1	8	4	4	2
AGTCTTCCACCATGGC	ref_5817_new	10	5	10	12	14	7	12	9	7	9
TCCGGGGTTCATACCT	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TGCGCGCCACGCTATC	ref_5817_new	46	43	52	43	48	27	45	32	47	24
AAGAGCCATTCAGAAA	ref_5817_new	6	13	6	10	3	8	10	3	7	2
TCACACACGGGCAGTA	ref_5817_new	0	0	0	0	0	0	0	0	0	0
TCGTACGGGCATTTTG	ref_5817_new	0	1	4	1	2	1	2	3	0	1
CTGTTGGAGTACAAAC	ref_5475_missing	4	0	1	0	2	2	0	0	1	1
CGAGCGTCATGCTTTT	ref_5475_missing	37	61	31	34	66	44	63	21	61	39
ATGATATCCTTCGGTG	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
TCCCGGGTTCATATAG	ref_5475_missing	9	20	7	12	15	8	18	2	8	4
ATTTTCGTGCTTGGGA	ref_5475_missing	24	54	29	15	41	22	37	13	33	16
GAACGATAAGGTAGTC	ref_5475_missing	4	18	21	13	36	8	39	14	27	20
TTCCGTCGGCAATTGA	ref_5475_missing	15	38	35	28	44	22	37	26	48	22
TTACGACTTCGTTTCT	ref_5475_missing	28	43	21	30	36	34	37	26	40	21
GGGGTAAGGTTCGTCA	ref_5475_missing	7	13	7	7	13	7	14	13	23	5
TAGATACTCTTTTGTC	ref_5475_missing	63	89	54	36	94	59	93	48	86	41
TTCGGCTATCTCCCGA	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCTCGATATTTT	ref_5475_missing	17	28	19	18	25	9	19	21	21	11
CACTGACGGAGTTATT	ref_5475_missing	43	66	58	32	67	42	72	32	67	49
AACAGTCTAGGTACTC	ref_5475_missing	6	13	5	14	14	8	16	4	18	2
GCACAATGGAGCAAGG	ref_5475_missing	12	15	5	2	18	6	19	3	21	7
GTAATCTTCTCATAAA	ref_5475_missing	9	6	8	5	10	3	6	4	11	6
ATTACGTTGGTCGGGC	ref_5475_missing	7	15	12	4	19	11	13	11	13	11
ACTCTATTGTACTTGT	ref_5475_missing	19	29	31	16	21	9	33	14	19	15
TGATTGGATGGGCACT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
ACAGGCCCTGCTGGTT	ref_5475_missing	32	42	29	34	41	19	45	24	40	14
ACTAATCCTGATGTCA	ref_5475_missing	28	54	42	37	46	33	63	32	65	36
GCCGTCGTCCACCAGT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
CGTGCAAGAATCTAAG	ref_5475_missing	39	97	51	47	114	39	92	43	97	33
TGGACCACTGCTTACA	ref_5475_missing	61	109	70	52	113	43	129	54	146	48
CCCTGAAGGGGTAACA	ref_5475_missing	45	101	82	51	82	59	102	60	82	38
AAATTTCTAACTTGTG	ref_5475_missing	32	34	30	35	52	33	56	24	59	21
GACTCGAGTCATCTTG	ref_5475_missing	24	18	20	13	27	9	18	9	24	16
TTCAGGTGTTTCGTGT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
ATGTATGAAATCAGCG	ref_5475_missing	31	61	37	20	45	32	63	41	52	31
TACTCACTCATATGCG	ref_5475_missing	18	45	16	17	55	13	47	22	60	18
AGATGGACTGTTCAGT	ref_5475_missing	37	30	28	26	47	26	57	23	50	23
CCGAATAGTTTGGTAA	ref_5475_missing	16	22	18	12	24	10	20	9	31	7
GCCGTCCGTATCACGT	ref_5475_missing	166	303	203	185	334	184	303	158	332	177
TTCACGTGGCTCCTAG	ref_5475_missing	33	77	55	35	62	28	61	39	78	41
TAGCATAGCCTCGGCG	ref_5475_missing	13	25	12	22	26	18	28	21	27	11
GTCGGCTTCAGGCGCA	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
GTGTAACTCTAGAACA	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
TCCTTCTGTTGCATCC	ref_5475_missing	10	15	9	8	14	12	14	5	16	4
GATCGTGTCCACTGTT	ref_5475_missing	0	2	0	0	0	0	3	0	1	0
CTCCAAGGGTGTATAA	ref_5475_missing	138	238	179	119	279	160	274	145	239	105
TTCCCTTTTTAGAGCG	ref_5475_missing	20	37	19	18	38	15	40	21	42	19
TTATTTTAAGTCCTTT	ref_5475_missing	39	57	68	34	68	36	46	41	70	28
AAATCTAGTTGCGGGA	ref_5475_missing	7	13	3	7	10	8	13	5	8	4
GGGTGGATAATCCGTG	ref_5475_missing	16	28	32	18	24	13	26	10	27	20
GCGAGTGCCGGTCACG	ref_5475_missing	5	6	9	1	8	3	8	1	12	7
GGCTAGAATGTTCCAG	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
AATTATACGTTTTTAA	ref_5475_missing	104	155	111	101	136	74	153	105	165	93
CAGCCTGATCCGATCA	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
AGTTCCAAGTTCCGCC	ref_5475_missing	26	26	13	31	25	11	22	24	30	13
CGTCGTTCACCCTTTC	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
ATCCGAGTTTGGCTGA	ref_5475_missing	20	34	24	18	30	17	27	13	22	14
CGGCAAGTCATCGATT	ref_5475_missing	8	40	21	21	24	13	26	21	32	14
GTTTACCCATTCTTCG	ref_5475_missing	11	12	9	15	22	15	10	11	11	7
TGAACTTACCGGTCCT	ref_5475_missing	1	13	2	3	12	4	13	6	16	5
ATTGGCATGCACGCAC	ref_5475_missing	7	13	5	8	18	9	8	2	13	3
CAATCGTGCCCCGGTA	ref_5475_missing	13	24	18	7	22	11	22	11	29	14
CCTGTCACTCTCGCTG	ref_5475_missing	2	4	1	1	2	3	5	2	7	0
TGACATTTACATCTCA	ref_5475_missing	53	20	85	81	32	65	19	68	25	51
GTCGCCGGCTATGCAA	ref_5475_missing	25	63	44	23	81	18	63	24	82	14
AAGAGGGTAATTCTTA	ref_5475_missing	11	12	8	6	4	7	7	10	14	7
CTGCCCGGGTGCTGTT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
CGTTTCGTAACTATTT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
CGTTAGAGGCCTCCCC	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
TTCATGCCCAACATAG	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
CGTGCTTGTGTTACCG	ref_5475_missing	31	86	42	39	81	49	81	25	70	31
CTCAACGTGCAACCTT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
CTAACCGCTTGGTCCT	ref_5475_missing	19	67	28	38	72	30	70	32	65	42
CTCGTGATTGTACCCT	ref_5475_missing	9	19	15	12	24	9	19	11	18	10
TAAGTCCCATTATGTT	ref_5475_missing	19	34	11	15	30	18	21	5	25	13
GTTCTCGCCCTGTAAA	ref_5475_missing	35	65	44	39	64	44	70	38	58	25
GCAATTATGAGTGCTC	ref_5475_missing	46	50	39	31	61	65	78	37	69	33
CGGGCAGAAGGGTGTC	ref_5475_missing	3	14	10	12	8	6	5	4	16	7
CTGTTATCTCTGCTTT	ref_5475_missing	6	13	9	6	17	3	21	4	7	6
TTGTCCGTATGTGTCT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
TCTTCATTAGATTTTC	ref_5475_missing	13	12	5	8	9	9	13	12	16	6
GGTCTAATACAGGATG	ref_5475_missing	6	14	5	5	13	5	13	9	9	1
GTACACCTATTCTTTC	ref_5475_missing	7	15	5	4	18	4	10	9	13	9
GCAATTCACTTACCTT	ref_5475_missing	0	12	0	1	24	0	14	1	21	0
GGCTGACCTAGTTGTG	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
CCGTATACCCCTATAG	ref_5475_missing	29	50	32	33	60	22	58	32	46	28
ATATATCGTGAACTTA	ref_5475_missing	25	52	34	40	67	35	58	34	51	29
CGCGCTCAGTCTAGCG	ref_5475_missing	29	48	23	20	31	24	48	24	45	23
TGGTATTTCAATCCCC	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
CACAAGAGAGCGATGT	ref_5475_missing	15	13	16	11	15	6	10	5	22	7
TTGTTCATTTCAACTA	ref_5475_missing	2	16	12	6	14	7	20	8	26	9
TATTCTTTTCCTATAT	ref_5475_missing	82	131	102	78	111	101	98	97	120	76
ATGGATATGCGGTGCG	ref_5475_missing	8	12	9	8	12	7	7	6	14	14
AAGGCCCGCCTGAAAT	ref_5475_missing	16	37	21	13	19	15	17	8	31	11
TGTTAAATTGCGTCGG	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
GAGAAAACTAGGTGAG	ref_5475_missing	24	31	30	25	36	30	42	16	40	21
TATCGTAATTCTGGCC	ref_5475_missing	10	27	19	18	23	10	19	10	17	17
TTGTCTTCAAGGTTCG	ref_5475_missing	18	33	32	31	64	23	52	23	38	19
GTATTCTTCTCTGTCT	ref_5475_missing	33	22	24	26	34	17	39	39	19	17
GCACGACTGCTACGAT	ref_5475_missing	56	72	62	45	72	41	76	48	92	35
CCGCTCAGAAGCTATT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
TTACCGTACGATTTGA	ref_5475_missing	6	8	6	3	17	4	13	7	21	5
GAAAAGCTAACGACAG	ref_5475_missing	13	17	19	21	25	11	23	14	20	8
TCAGTTTTATCATCTT	ref_5475_missing	31	41	44	27	51	22	47	29	33	20
CCGTGACGACCGTGTG	ref_5475_missing	28	50	23	25	45	22	62	17	72	22
TAAGTTTGTCTTCTCT	ref_5475_missing	103	137	124	93	132	92	126	83	150	94
CCCATGCGCAACTGCT	ref_5475_missing	27	62	37	36	68	37	69	41	80	32
GGTAAGTTAACTCCTT	ref_5475_missing	0	0	0	0	0	0	0	0	0	0
TCGTTACTTAAAGTTT	ref_5475_missing	6	11	11	4	10	4	6	5	9	8
GTTCGCTCTCAATTTC	alt_5939_new	6	8	9	5	9	4	12	6	12	9
CATTACAATCCGCCTG	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TTAAGGACCTAAGTGA	alt_5939_new	43	44	46	23	59	25	61	26	41	27
AGTTGTTATTTATTTT	alt_5939_new	0	0	0	0	0	1	0	0	0	0
ATGAATACATTTTTAT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CTTTAGGAAGTGGATC	alt_5939_new	28	58	32	23	52	25	49	25	45	24
TAGTTTACTGTCAAAG	alt_5939_new	171	244	229	153	289	168	286	141	293	159
AAGTATTCGTCCACCT	alt_5939_new	6	3	6	6	5	2	1	4	4	1
CAGCTTGTCTATTGCC	alt_5939_new	10	44	10	14	50	9	40	5	47	12
CCCTCAGGGCTGTCCC	alt_5939_new	2	8	7	0	10	4	10	1	8	5
ATGACAAGGCTTTCTT	alt_5939_new	10	11	11	14	20	15	22	8	20	6
TTCCAGTTCTGTGAAG	alt_5939_new	0	0	0	0	0	0	0	0	0	0
AAGAATTTTGGTACAT	alt_5939_new	8	13	9	6	10	6	6	7	19	3
CAATTCTTTGAACAAC	alt_5939_new	13	17	8	13	8	10	14	4	20	7
GCTGGGAATGTTTCCC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GCCGCTTGAGAGGCCC	alt_5939_new	18	21	25	18	22	17	22	30	30	10
GAAAGGGTTCTGGTTC	alt_5939_new	2	2	3	2	6	2	6	2	3	0
TAATTGCGGCTAAGTT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
AACGTTAAGCAGTATT	alt_5939_new	38	70	39	30	71	40	67	36	47	36
GGGTCATCTACATTGA	alt_5939_new	19	23	20	10	20	8	29	19	24	10
CCAACCTTTGCTTATG	alt_5939_new	3	60	11	13	27	4	62	4	63	6
ACAGGCTACCTTCTAC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CGGCCACGACTTCAGA	alt_5939_new	2	12	2	6	12	2	15	6	9	1
GTAACAGATTATCTAT	alt_5939_new	29	35	47	27	48	21	47	24	44	20
ACGCTCGCTTGCCATT	alt_5939_new	26	56	38	14	46	27	47	39	49	34
CTCAATTACCGGTCGA	alt_5939_new	16	32	23	18	45	18	48	24	55	20
ATATCATCAGGGGGTA	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TGCCAGTCAAAGCCTA	alt_5939_new	9	13	17	11	15	7	10	11	11	4
AGCAGATGGAATTTAA	alt_5939_new	22	32	14	23	31	19	32	16	34	23
ACGAAATCTTCCGCCT	alt_5939_new	7	11	10	8	8	6	10	4	9	3
AAGATTCCTAAATTGG	alt_5939_new	0	0	0	0	0	0	0	0	0	0
ATGAAGGATGCTTATG	alt_5939_new	5	5	4	3	15	4	4	4	10	2
TGGGCGATTGAGTAGT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CTAGCAATTATATACT	alt_5939_new	12	30	22	16	37	17	33	21	39	16
TTGGATCTTCTTCTAG	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TTTCGACTTATGGGCA	alt_5939_new	7	15	4	6	18	8	11	10	14	10
CTGCCCGCCCCGTGAG	alt_5939_new	10	13	16	6	20	8	20	9	23	14
CCAGGCGCACTTCGGC	alt_5939_new	1	1	0	2	4	1	8	0	5	0
TTTTAGCTCCGGCGTC	alt_5939_new	33	40	36	31	55	30	65	19	45	23
GCCCCCAGGTTGATTC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TCACAGGCTTTGGTCT	alt_5939_new	3	3	0	1	2	0	2	0	4	0
TATAAATTAGGGAATG	alt_5939_new	51	65	44	48	75	48	88	44	101	38
TCTCTGTCTGGGATTC	alt_5939_new	13	36	23	20	34	17	50	23	44	23
GCGGTGTCGAAGATGT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TCTGTGATGGGCGTCC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CAGTATCTCAAGACGT	alt_5939_new	6	8	11	11	13	12	17	9	18	7
TGTAATGGTTACCTGT	alt_5939_new	26	42	34	26	61	33	64	31	40	19
TTGATATCCCTGGAAA	alt_5939_new	9	20	13	7	18	13	15	7	28	12
ATTGGAAAAGCATGGC	alt_5939_new	61	85	47	63	82	62	116	52	97	56
GTGAACTTCGCTATCA	alt_5939_new	92	135	92	74	148	94	121	77	132	70
ATGCCTTTCTTCAATG	alt_5939_new	36	31	56	35	35	19	41	21	48	33
TTGGCGCGGTCCTCCA	alt_5939_new	18	31	21	18	26	10	22	23	31	24
CCCCAAGTCCTACGTT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TGCTTTTCACCTCAGG	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GGTTTGTAGTCAATTA	alt_5939_new	56	90	46	65	101	68	110	53	90	63
TTTATAAAAGTGGTTT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
AGTGCTGCGGATAAAT	alt_5939_new	29	54	45	24	71	34	63	38	60	29
CGTCCGCTTCGCGGCC	alt_5939_new	11	13	14	6	20	15	23	10	16	13
TCCCCAAAATGCTTCT	alt_5939_new	11	21	5	7	25	9	29	10	33	16
TATTTGAGGTCGCCTG	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GATTTGCCGATAGTAC	alt_5939_new	8	6	3	3	9	6	2	4	12	3
TGTTATGCGCCCTCCG	alt_5939_new	23	40	24	40	52	22	54	25	43	26
CTGTCTGTCTAGAACA	alt_5939_new	0	0	0	0	0	0	0	0	0	0
AGTAAAATCGGCTGAT	alt_5939_new	4	9	7	4	3	3	5	4	1	6
ACTGCTTTTCCTGTTG	alt_5939_new	9	15	9	5	19	4	15	12	16	7
TTGGCTAAATTTGTTC	alt_5939_new	14	29	10	16	25	9	27	9	23	14
AATACCCCCGCCGTAC	alt_5939_new	11	33	11	11	32	11	29	10	34	9
TTAACCTTCTAGTGGG	alt_5939_new	36	73	68	41	58	37	66	21	78	34
TGATTGACTGCTGAGT	alt_5939_new	86	163	108	112	153	99	136	80	168	88
TATTCCCTGCAATCCG	alt_5939_new	13	14	17	4	17	6	17	7	14	16
ATTGAGTATGCACCGA	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TAGACTCCGTGAGTGG	alt_5939_new	19	62	25	22	78	22	62	23	64	16
GCTTGCCTGGTAGGGG	alt_5939_new	21	21	13	26	26	16	17	12	21	11
TTATCGTCTCGGACTT	alt_5939_new	24	73	36	40	61	23	51	35	54	33
TTTATTTTGAATGCCC	alt_5939_new	9	21	14	12	12	11	18	8	27	6
CCGTACGTAATTGAAG	alt_5939_new	0	0	0	0	0	0	0	0	0	0
ATCGTACAATATAGGT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GCTGGCCAGAATCAAA	alt_5939_new	4	3	4	4	7	2	11	3	13	4
TGCGTCCTCGGTCTTT	alt_5939_new	11	38	8	9	15	13	15	6	24	12
GTTCCCGTCGAAGTTT	alt_5939_new	12	55	14	10	36	8	52	16	49	9
TACAAGCATCTGCTAT	alt_5939_new	7	12	6	10	9	4	10	1	7	5
ATGGGGCAACCTTTAC	alt_5939_new	5	13	5	7	16	2	13	6	8	5
GGAGGCCTCTCTGCCC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CCTTCTATACGACACT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
ATCTCGCTTACTGAAC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
TAGATCGACGCCTACT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CTTGCATCTTTTTCTC	alt_5939_new	6	1	7	4	5	2	3	1	9	1
CGGAGATGGTTTTTTG	alt_5939_new	34	40	33	50	41	33	37	24	54	33
AGTGATCATCTAAAAG	alt_5939_new	36	49	43	33	76	43	71	44	67	26
ACCCTCTTCCCCTAAC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GTGTACGTCTGTCGGT	alt_5939_new	9	15	22	12	20	11	14	9	6	10
GGGCTTGTCAATCAAC	alt_5939_new	18	27	29	20	33	19	23	13	34	11
TGTTATTTCGTCGCGC	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CGGCCTTTACTTACTT	alt_5939_new	11	23	17	12	34	14	22	15	28	10
TGAAGGCCGAGGGTTA	alt_5939_new	25	21	18	25	26	27	31	21	37	26
GTTTCGAGTCCAAAGG	alt_5939_new	2	2	1	0	0	2	2	0	0	0
CTTGCTAGGTGTCTGA	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GCACTACCTATTTGCT	alt_5939_new	27	65	35	31	70	27	51	23	59	28
GCGATGTAAAGGTGCC	alt_5939_new	21	16	32	14	32	16	24	15	25	11
CGTTTACCAGACGACT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
CATCGTAGTTGGCTTT	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GTTACCGCACTCCAAT	alt_5939_new	7	16	9	11	15	11	15	11	24	6
TACAACATACGGACTA	alt_5939_new	5	10	5	6	12	2	5	9	13	2
TGAGATGCCTCTATCA	alt_5939_new	0	0	0	0	0	0	0	0	0	0
GTTCGTAGCACATTGT	alt_5939_new	15	12	14	14	16	6	10	7	10	6
TGTAATATTCGCTACG	alt_5939_new	24	34	33	25	42	22	46	23	36	17
CTTATCTGTTTGGTTC	ref_5791_new	0	0	0	0	0	0	0	0	0	0
ACACACGAAGGTACTG	ref_5791_new	13	13	11	16	19	11	17	12	18	16
GTTTGCCCTACTGTCA	ref_5791_new	0	0	0	0	0	0	0	0	0	0
TCTTGGATCATTCGGT	ref_5791_new	47	84	90	69	58	44	73	49	64	53
CAGTCTCTGGCTCACC	ref_5791_new	20	31	20	28	32	26	32	14	28	11
GTATGGCACTGACCAT	ref_5791_new	4	7	4	3	3	5	3	1	11	5
GCCATTATCGGGCCTT	ref_5791_new	8	8	14	6	7	4	6	4	4	2
GACCAGCTAAAACACT	ref_5791_new	9	16	13	8	10	14	9	9	9	9
CGGGGGTCCGCTCCCC	ref_5791_new	10	20	13	15	11	13	12	12	25	11
TCCGGGTATCGACGAT	ref_5791_new	0	0	0	0	0	0	0	0	0	0
GGTGAGGACCAATCAC	ref_5791_new	22	38	34	26	34	23	47	36	44	29
GACGTTCCGTCATTTG	ref_5791_new	9	9	10	12	16	15	16	13	20	10
GTCAATCCTGCTTTTG	ref_5791_new	184	251	263	192	299	171	276	200	227	168
TTTGATAATTCTTGGT	ref_5791_new	6	12	9	15	12	11	4	7	14	8
GACCTGACTGTTCTTC	ref_5791_new	0	0	0	0	0	0	0	0	0	0
TAATCTCCACTTGCAT	ref_5791_new	69	72	85	41	95	54	71	42	80	67
AATCGAGTTCTCCGGC	ref_5791_new	21	32	26	25	36	22	28	23	35	23
TAGTAAACTAGGGGTT	ref_5791_new	6	17	9	15	13	13	15	6	9	5
CGTATTCCTTCCGCTT	ref_5791_new	18	31	21	31	33	26	24	26	26	25
ATCACTCGCTCAGACG	ref_5791_new	12	20	12	10	27	3	23	13	24	3
TTTGGTTGGAAGCATT	ref_5791_new	10	34	15	20	21	16	18	18	19	21
CTGACTGTCTTCCCTG	ref_5791_new	5	12	11	7	19	11	18	15	10	6
CGGTCGGTGTAGATAT	ref_5791_new	0	0	0	0	0	0	0	0	0	0
TCGGCACTAGCGTGGT	ref_5791_new	18	22	12	15	23	21	23	12	22	23
GAGTTTTGGAAACGTC	ref_5791_new	21	19	27	17	17	14	27	20	26	20
CAATGCATGTGATCCT	ref_5791_new	0	0	0	0	0	0	0	0	0	0
CAGAACGTTCATCACG	ref_5791_new	30	37	60	33	43	34	43	32	50	30
GTACCGAGTCATAAGC	ref_5791_new	40	30	41	38	50	30	48	30	46	27
AGTGATCAGGTCTCCC	ref_5791_new	99	126	91	89	122	90	155	88	123	81
ACTGATTTGTGGCCCC	ref_5791_new	150	203	154	128	198	119	192	138	198	130
CGCACAAGTGTTTCTT	ref_5791_new	95	110	129	118	123	96	130	99	121	93
CCAACCGCTGTTTTTA	ref_5791_new	9	48	15	18	33	9	46	12	39	16
TCTCTCAATCTTGTTA	ref_5791_new	2	1	4	0	3	2	2	0	1	1
GCGGCTGACTTTTTAT	ref_5791_new	2	5	1	6	5	1	6	2	5	0
TACGCGGTCGGTGGGA	ref_5791_new	21	21	15	22	25	25	20	15	19	22
TTTTAGTGCACGCGAA	ref_5791_new	17	14	17	13	25	14	17	11	18	10
GGATATCGCTATCTCA	ref_5791_new	76	94	107	73	102	77	110	77	110	73
CCGCTTTACTCTCCGC	ref_5791_new	12	18	5	7	7	7	15	8	13	1
CCAATAGCGCTCTGTG	ref_5791_new	25	55	39	25	74	22	76	28	67	24
GGTTTGTTAGCATGTC	ref_5791_new	97	102	108	89	114	90	122	84	127	73
CTGTTGCAGCCACTCG	ref_5791_new	0	0	0	0	0	0	0	0	0	0
AGTATCGTATGTGGCA	ref_5791_new	6	19	8	6	12	11	14	6	10	3
CGTTATCAAAAGTATC	ref_5791_new	20	39	36	25	37	42	66	21	54	30
TGCCGTGCGCGAATCT	ref_5791_new	4	7	3	6	10	1	5	1	6	3
GCTGAGGAACTCTTTA	ref_5791_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTTTGTCGTTG	ref_5791_new	3	1	4	2	8	5	2	8	9	8
ACTTTCAGCGTGTGCC	ref_5791_new	8	2	8	7	9	6	10	5	17	5
CGGGAATAGATGAGTG	ref_5791_new	13	20	16	12	17	8	31	11	19	5
TAAATCGGTCTAACCT	ref_5791_new	11	6	18	11	19	6	11	7	8	11
ATTATGTATAACGAGA	ref_5791_new	19	27	34	29	47	23	37	18	46	23
CCTCTAGACTCATCTA	ref_5791_new	0	0	0	0	0	0	0	0	0	0
ACCGCGATAACACGTC	ref_5791_new	11	4	12	5	4	12	10	7	7	4
TACTCCGAGTGGGAAA	ref_5791_new	8	5	9	1	3	6	5	4	8	3
TGCAGTTTTCCAGCAG	ref_5791_new	100	114	132	96	148	113	159	82	142	91
GAGCCATGTAACATCT	ref_5791_new	14	15	21	23	15	19	16	18	15	16
CATTACCGTTTGCGCA	ref_5791_new	10	12	6	11	14	7	5	8	17	11
AATTTAACTCCGATAG	ref_5791_new	16	21	18	11	23	18	22	9	26	13
TTAGTCACCTCAATAC	ref_5791_new	22	23	28	22	24	17	20	26	21	18
GTACTCAATTCCGGTA	ref_5791_new	41	27	35	25	45	18	41	36	49	29
GCCCCTCCCGCATTGT	ref_5791_new	0	0	0	0	0	0	0	0	0	0
CAGTTAGTCGGCTGGA	ref_5791_new	11	10	12	6	18	5	16	9	16	11
TTCATACGAAAAAGCG	ref_5791_new	0	0	0	0	0	0	0	0	0	0
TGCCGCCTATGCGCGC	ref_5791_new	15	27	9	12	17	14	18	16	25	9
ATTTTGTGTGCTCGGA	ref_5791_new	6	5	9	11	4	8	15	5	14	8
AAGACAATGAAATAAC	ref_5791_new	0	0	0	0	0	0	0	0	0	0
CGAACCCCTAGCAAGC	ref_5791_new	13	25	27	31	27	36	43	16	34	13
TCGGCAGCTCAGCACT	ref_5791_new	51	71	73	62	57	60	58	53	78	46
GTCAGTAATGCTCACG	ref_5791_new	20	17	27	27	44	18	37	27	32	19
GATTCGATTATAGATA	ref_5791_new	22	27	18	14	18	11	32	16	26	17
ACCGTACCTAGCTCTA	ref_5791_new	10	13	8	3	11	6	16	5	13	8
GGCTTTGCTCTGTGAT	ref_5791_new	17	30	35	25	26	24	44	22	38	14
AACCCATGGTCCCCGT	ref_5791_new	1	0	4	0	7	1	4	0	3	0
TCCGGGCTTCGCGAAC	ref_5791_new	17	12	10	16	17	14	10	25	19	10
TGAGCTAGGTGGTTAC	ref_5791_new	4	6	13	10	13	2	10	10	12	7
TTTTTGTTTGCCCAGT	ref_5791_new	6	13	13	12	8	7	14	8	13	1
CCTACGAATTAACACG	ref_5791_new	0	0	0	0	0	0	0	0	0	0
AGGTCGGCTCATCGGT	ref_5791_new	0	0	0	0	0	0	0	0	0	0
TTTTGCGCCAGTATTG	ref_5791_new	5	7	7	4	7	2	4	9	8	2
TATCTGGTGTACACCG	ref_5791_new	10	15	4	7	11	6	5	11	14	4
AGGTTGACCAATACTT	alt_5061_fdr	13	29	28	18	22	17	28	25	25	20
TCAGCTACTGGTTATA	alt_5061_fdr	19	22	15	25	26	15	24	8	20	18
AGGCTGCTGTTATGGT	alt_5061_fdr	22	26	35	31	22	22	18	19	32	22
AATTACTAGTCACAGG	alt_5061_fdr	30	55	35	36	51	34	33	31	72	36
CCCACCTCGGGAAATG	alt_5061_fdr	15	12	11	13	22	11	28	17	24	14
TTCTTTACCGACTTAG	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
GTATGTCGTTACGATA	alt_5061_fdr	15	25	18	26	23	15	17	18	27	11
GACTTAGTGTTTGTAT	alt_5061_fdr	103	167	129	106	158	101	157	112	189	113
CACTACATTTCCATGA	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCTATTGGTCAGT	alt_5061_fdr	408	444	457	405	501	386	486	362	518	337
GCGTAGATGTTAGTTT	alt_5061_fdr	8	12	20	10	25	13	12	7	10	9
ACAGTATTGCACCACA	alt_5061_fdr	20	20	17	26	23	12	23	16	20	16
AAACTCCGTAATGCTT	alt_5061_fdr	33	43	54	32	38	41	36	32	41	46
GGGTTCTTGAGACTAT	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTCACGCCGGCAT	alt_5061_fdr	120	119	141	129	142	151	123	119	141	108
CCTCCATGTTACAGTT	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAGGCCAAGTTGT	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
GCACAGAACGATATAA	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTAGTTCGGCCA	alt_5061_fdr	21	31	29	22	32	22	28	32	27	23
CCTAAGGCTCATGAAT	alt_5061_fdr	2	5	8	2	3	4	4	1	8	3
AGAACCATGCAATCTT	alt_5061_fdr	41	37	46	38	33	35	45	43	53	39
CCGTTTCTGTTATTCA	alt_5061_fdr	3	5	7	2	8	5	5	8	4	2
TAGTAAATTCCTGAGT	alt_5061_fdr	22	18	27	24	16	12	32	25	20	16
CCATTTTTGTCTTCAT	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
AGTACTAGAGCTTCCA	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCGGTTTGCAAGG	alt_5061_fdr	22	44	28	30	45	18	43	21	48	22
TTTTGACTTCTTCTGC	alt_5061_fdr	44	56	45	34	43	35	67	37	50	40
ACGAATGGAAATGCGC	alt_5061_fdr	4	8	8	13	7	6	9	3	9	6
GAGCGATTCAAATGGT	alt_5061_fdr	21	25	27	24	17	24	28	16	16	11
AACTACCCATGCATTA	alt_5061_fdr	4	5	7	7	10	4	8	5	10	8
ACTCCACTCATTCCGT	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTCAAACCGATAC	alt_5061_fdr	175	179	179	174	189	161	180	150	209	174
GGGGAAAGGTTATTTA	alt_5061_fdr	11	19	11	11	9	12	17	12	14	12
CATCAACGAGCTACGC	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGCAGTAAGTGGA	alt_5061_fdr	9	16	13	13	25	14	15	16	13	11
ACAACTCCGAGTCGGC	alt_5061_fdr	30	33	26	18	20	21	28	29	30	23
GCCGAATGTTCAGGGT	alt_5061_fdr	38	45	46	49	72	39	72	48	65	33
GTAAGTTGTGCGCCAC	alt_5061_fdr	8	7	14	2	6	4	8	3	1	3
GCTTCGTTGTGTTTTC	alt_5061_fdr	37	39	42	23	35	44	47	35	41	23
GCCCCGCTCGGATACT	alt_5061_fdr	77	71	108	88	55	74	71	53	98	52
CGACCCTAGCCCGTCT	alt_5061_fdr	48	73	76	58	72	69	72	51	60	64
TCGTAGTAAGCCGTAC	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
TTACCTGCTAGGAGAG	alt_5061_fdr	7	44	12	9	34	10	26	3	39	9
CCTATCACGGGCGTCC	alt_5061_fdr	5	10	6	3	8	6	11	3	10	1
TTTTCAAATATTATCA	alt_5061_fdr	102	122	143	121	110	108	135	101	140	105
CACCGGTAGACCACAC	alt_5061_fdr	19	35	14	13	39	6	38	10	29	12
ATTTCCAAACGTTACT	alt_5061_fdr	36	36	30	21	26	23	29	28	30	41
AAGTAAGGTGCGGCGG	alt_5061_fdr	20	30	24	13	30	24	16	18	40	28
GATTAAAACCGGCCCG	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
GTATCACAGTCCGAGC	alt_5061_fdr	17	31	33	20	26	17	38	30	26	25
CTACCGGGATTCTATG	alt_5061_fdr	107	104	117	99	91	100	101	94	96	80
GTCCTATAGGGGATAA	alt_5061_fdr	68	88	90	73	84	69	90	67	77	64
GCATTCCCCTTTCTAT	alt_5061_fdr	0	1	0	1	4	3	4	5	4	2
ATCTACTTCGAGTTGG	alt_5061_fdr	24	21	25	26	25	33	37	28	32	22
TTATCGACGCTTTCCC	alt_5061_fdr	9	15	25	19	27	11	4	13	21	10
CCGTCAGGAAACACCT	alt_5061_fdr	6	20	15	14	7	9	23	3	19	8
GTGGAGGTCTCAAAAA	alt_5061_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGTACTCATCGCC	alt_5061_fdr	27	20	29	24	40	21	36	27	30	20
CGCGCACTGAGGACCG	alt_5061_fdr	33	35	37	37	35	25	43	38	54	26
TTTTTGATGGGCCGAT	alt_5061_fdr	29	26	44	39	28	46	41	34	39	31
CCGGGAATTTCCTGGT	alt_5061_fdr	6	14	10	9	11	6	13	13	17	4
CATACCTTGATTTTTC	alt_5061_fdr	14	18	12	14	13	10	26	6	12	7
ACCTACACTTGCAAAC	alt_5061_fdr	56	91	56	57	92	42	90	51	104	46
CTGGGTTCTAACAGTG	ref_455_RC	18	22	22	23	23	18	20	21	19	15
AGAATGCATTCGCGCA	ref_455_RC	11	15	16	14	11	24	13	23	11	23
TTATTCAGATTATCCT	ref_455_RC	2	1	5	1	0	0	1	2	3	3
GCAGGCCGCGATCTGT	ref_455_RC	27	21	27	17	23	32	21	28	24	14
TCCCACATAATTTGTA	ref_455_RC	36	33	33	32	28	26	30	26	42	23
TTTATAGCGCTAACTC	ref_455_RC	86	56	112	80	69	77	77	62	79	70
TGGATCATGCTGTCCT	ref_455_RC	20	14	18	12	14	10	6	14	8	6
TCTTGTTCTGGTTAGC	ref_455_RC	0	1	3	3	1	4	2	3	2	0
TGGTCCTGGTAGTCAC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CGTCTACGTAAGCATG	ref_455_RC	64	52	88	81	59	68	43	56	57	54
CCGAGGGTTCGTGTCA	ref_455_RC	24	29	53	26	26	21	24	29	24	18
GCTAACTGTAACTATC	ref_455_RC	34	27	29	26	21	20	36	29	26	21
GCGTCCTTCGGATCGC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CTGCTGACTACTGCGT	ref_455_RC	13	20	18	15	25	9	22	3	27	10
TGAGCGCTCATTAACG	ref_455_RC	47	40	62	73	56	30	48	40	56	43
CATGCGGGGCGTCTAT	ref_455_RC	30	27	36	20	17	20	33	27	30	21
GGGGGAGGAGCACACC	ref_455_RC	32	34	42	21	40	32	37	31	39	39
GTTGTCGTTGGCGCTC	ref_455_RC	141	154	165	161	121	141	99	127	147	124
CATCGTCGAATGTGTT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
ATGTGGAACAATCACA	ref_455_RC	269	296	300	276	273	232	262	230	317	231
TTACAGTCCTCTGCTT	ref_455_RC	37	31	53	38	28	32	29	38	18	38
TACTGTGATTAAGCCA	ref_455_RC	46	46	46	63	62	52	56	39	46	55
GTCATTGGAAGCCCGC	ref_455_RC	14	17	13	13	15	8	7	13	9	12
CCTTGCTAATTATTGC	ref_455_RC	31	23	31	41	26	26	21	32	33	26
CTAAAGGCCACTTGTA	ref_455_RC	18	31	19	21	15	14	22	16	23	22
GCTACTCCGGGCCAAC	ref_455_RC	30	29	40	33	30	31	34	29	24	26
ATTTTGTGTTGTACAT	ref_455_RC	148	149	154	144	146	107	147	105	152	109
TTTCGGCAGGTTTTTG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
TTACAGGTCACTCTTG	ref_455_RC	17	23	23	13	20	13	17	30	18	25
AGATGGCTCTTTTCTA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
AGTGGGGGCGATCGCA	ref_455_RC	5	3	16	11	6	8	11	8	6	10
GCTCCGATGCCTTTTC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
AATATATGTTACCTGC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CTCCCTCTGAAGACCT	ref_455_RC	17	22	11	10	19	22	28	19	21	18
GTCCTTTCTACATCGT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
AATGGGGACTAGCTGC	ref_455_RC	5	25	20	20	31	9	18	14	16	16
TCAGCATGTTTCCACT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCCGACAGTATA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CCCCTGGAGGCCGTAG	ref_455_RC	19	14	11	17	9	16	20	15	19	15
TGCTTCTAGTTGTAGT	ref_455_RC	31	25	37	32	36	25	22	29	32	28
CGCACTCTGTGCGAGT	ref_455_RC	15	13	22	18	16	16	19	12	19	19
CTCTTATTACTGATCG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CCATGCTTAATTATAA	ref_455_RC	43	55	53	47	63	38	48	46	58	42
AGTGTAGTGAGGTTTG	ref_455_RC	75	89	96	85	72	104	83	86	99	86
GTTATTAAAAACATTT	ref_455_RC	54	32	65	40	38	53	36	43	48	50
TGAGCAAATCCATGAT	ref_455_RC	136	143	150	138	86	109	149	119	122	116
TACGTAAACTGGTTGA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
AAGTATACACTGGTCG	ref_455_RC	52	38	71	57	55	51	37	52	58	43
CGTTGTTTGCTCTATT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CTTTGTGAGTATGGTA	ref_455_RC	8	12	17	18	8	9	19	8	17	3
TCGCACCAGTGTTCTG	ref_455_RC	142	144	160	119	150	128	130	142	168	122
CTCAATGCGTCAAGCC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
GCCGAGTTCGCCTCAC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CCCGCTAGACCTCCCC	ref_455_RC	5	5	2	3	8	4	10	1	8	0
TGTTTCATAGTTTCGG	ref_455_RC	59	57	76	89	65	53	59	72	49	72
TTTTTTCTAAGTACTC	ref_455_RC	35	28	63	43	47	36	42	51	34	30
ACGTATATACACCATC	ref_455_RC	20	7	19	14	16	18	19	19	18	11
CACCTCTGTAACTACC	ref_455_RC	0	0	0	1	0	0	0	0	0	0
CGGGTTTGGGGAAATC	ref_455_RC	24	17	35	28	29	30	12	24	25	29
GTCAGACGGGTGGCCT	ref_455_RC	29	21	25	25	21	14	18	23	13	15
ACTCTCCGTATTCGTC	ref_455_RC	1	18	3	1	27	2	24	6	21	1
TATCAGCACGCGGTGT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
AGACCTTCCTTGTTGG	ref_455_RC	9	6	7	10	3	9	3	3	10	8
GACGCTTTATCGTTTT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
GAGCTTTTATTGGGCC	ref_455_RC	0	3	0	3	1	0	2	1	1	0
GGAAACTCAGGTTAAC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
ACCGTCTTGTATAGTC	ref_455_RC	37	26	38	50	35	34	45	39	34	37
CCTACTCTTCCTTTTG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
GACTGCGGCTTGGTAT	ref_455_RC	2	2	5	6	4	2	0	0	3	1
TTTATTGTCATCACGG	ref_455_RC	8	2	5	10	11	12	8	8	9	6
CCTTCCGTCAGTGCCA	ref_455_RC	20	24	47	28	25	30	27	36	31	20
GTAGCACCTGTTGTCA	ref_455_RC	25	33	45	31	38	31	35	26	30	37
AGCCGCGCATCAGCAC	ref_455_RC	24	34	49	33	38	34	35	27	33	41
AATCCTGAGATTAAAG	ref_455_RC	79	49	79	65	71	78	64	58	60	64
CTAGGTTCCTGCCGCA	ref_455_RC	65	45	62	58	49	56	47	52	51	58
CTGCTTAGCGATAACT	ref_455_RC	53	73	64	62	58	64	67	66	60	63
ATTCGTTAGCCACGCC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CACCTATTCTACCTTT	ref_455_RC	60	65	78	61	71	40	67	58	69	63
TCACTCTGTTCTGGCC	ref_455_RC	8	3	8	10	6	7	8	3	8	7
CTATAGTCTGTAAACG	ref_455_RC	33	35	24	32	37	29	49	29	37	28
CGACGGGGTGCTGCCG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CAGTTAGCGTCCGTGT	ref_455_RC	17	19	20	21	21	10	14	10	24	13
CCCGATCTACAGGATA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
ACTTGCTTCAGGGAAG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
GTAGGTGCATCCGGAC	ref_455_RC	60	46	64	54	48	59	54	50	61	43
ATCTTACTGTGGCGGT	ref_455_RC	65	52	59	55	58	46	57	59	63	72
AAATCTATCAGGTTTG	ref_455_RC	62	43	93	54	52	58	39	59	42	55
GTCTCTCGGGTGGACC	ref_455_RC	74	64	105	85	66	79	51	73	83	78
CGAGCCACTGTTACAA	ref_455_RC	3	7	5	2	4	4	4	5	3	1
TGAAGTTCAGGAAAGC	ref_455_RC	10	6	9	5	7	12	10	9	9	3
GGTGTAATTGTTCGTA	ref_455_RC	4	8	5	6	7	8	5	3	4	7
GGAAATTCTGGTCCCG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CGCGATCTCGTCTGGT	ref_455_RC	41	26	59	46	34	37	25	41	38	40
TGTTCCGTGGGACCAC	ref_455_RC	17	23	20	17	18	19	23	22	22	17
GGAGCTCTGATAGAAC	ref_455_RC	113	111	136	111	120	95	129	102	100	121
ACCAGTCTCTCCGTGG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CTGCTCTAGGCCTTTC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
TCTAATAGCGCTTAAG	ref_455_RC	14	18	21	20	17	16	14	13	22	9
AAGCATCGGGAGATTC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CGTCGTTTGCAGATCG	ref_455_RC	68	68	73	70	61	55	72	82	59	66
ATTAACTCTCAATCTC	ref_455_RC	5	3	6	8	3	5	6	5	3	5
CCTTTTTCAAGCTCGT	ref_455_RC	0	0	2	5	5	3	0	0	1	3
CTATTGCTCTGATTTC	ref_455_RC	30	24	33	23	17	18	15	17	16	25
GAGTGTTCCCTTATAT	ref_455_RC	32	28	33	30	21	30	21	24	39	29
ATTTTATACGTAGAGT	ref_455_RC	15	8	11	12	15	13	7	7	12	6
TCTAATTTTATCGTGA	ref_455_RC	377	343	497	426	365	364	352	388	347	340
GAAAGTCAATGTTCTT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CGGCTTTTCATGCATT	ref_455_RC	26	15	19	23	19	15	20	18	26	18
GCCCCGCCATATGGAC	ref_455_RC	0	2	2	7	3	2	1	1	4	3
CAGTTGTGTCCTCTTG	ref_455_RC	100	102	130	107	94	88	101	91	120	76
TCATGCATTTGTCACG	ref_455_RC	78	66	73	53	56	60	63	77	63	53
TCAATAATCTTATGGT	ref_455_RC	23	24	35	15	29	29	21	26	19	23
TTTTCTCGGCCCTTAA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
ACGGGCTACACACATT	ref_455_RC	62	41	67	57	55	53	46	36	50	43
ACTCGGAAGGTAAGCT	ref_455_RC	69	58	80	59	46	62	42	62	66	55
GTGGCGGCTCGTTGCT	ref_455_RC	0	0	0	0	0	0	0	0	0	0
TAGATCTTCGCCTCTA	ref_455_RC	7	6	13	6	15	6	13	10	16	7
AGGGCTTTTCAGTTTA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
ATATTCACATAGAAGC	ref_455_RC	59	62	60	66	41	60	51	65	54	48
GCTCCAGAACATCTAC	ref_455_RC	25	32	37	37	36	30	42	27	33	22
CATAGTTATACCCAGT	ref_455_RC	35	41	43	52	41	48	41	37	50	36
CCATATCTAACTACCC	ref_455_RC	0	1	2	3	1	2	2	3	6	3
CCACCGTGCGGCAGCA	ref_455_RC	4	10	8	9	10	9	13	11	10	8
GTACACGATAATTACT	ref_455_RC	43	57	61	45	54	48	72	39	58	47
GTAACTGTCTAGAACA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
ATCACAGTTATGTAAG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTATTCTTGTCA	ref_455_RC	57	44	78	45	54	45	36	44	47	44
GTAATAGCACGCCGGT	ref_455_RC	7	7	7	1	8	6	8	12	1	5
CCTAATGGCAGCGGGG	ref_455_RC	0	0	0	0	0	0	0	0	0	0
TGTCTAGTCCTTATGC	ref_455_RC	0	0	0	0	0	0	0	0	0	0
TGGTCCTGGTGTGTGT	ref_455_RC	81	77	117	80	81	86	81	85	89	80
ACGTCTGGTCGGCCTA	ref_455_RC	0	0	0	0	0	0	0	0	0	0
CAGTCGGTACTATTTG	ref_455_RC	22	26	17	30	16	20	19	25	25	13
AGTCAGTCTGCGGTGC	ref_455_RC	18	21	37	29	31	25	15	22	25	17
GCTTGGTTACAACCAG	ref_455_RC	47	48	75	43	47	30	52	53	44	44
TCTATTGTTCGCCTCT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
TTAGTTCTCTAGTGTC	ref_5692_new	27	34	38	28	31	22	45	11	41	8
CTCTCGCTGTGCTGGC	ref_5692_new	13	18	4	5	16	6	13	7	14	8
TCTTTCTACGTCTTTC	ref_5692_new	10	16	31	13	15	8	30	10	29	8
TAGACTGCGGTGGCCA	ref_5692_new	8	17	11	7	8	4	15	4	9	6
CATATCGTGTAATGCG	ref_5692_new	0	0	0	0	0	0	0	0	0	0
GAGTGATCAGTCTTTT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
TAATTATGAAAATGCC	ref_5692_new	22	22	29	19	30	11	33	13	33	18
TGTCTGCTCACTCGCT	ref_5692_new	57	82	64	52	101	66	99	43	95	51
TCTAGCGGTCAATGCG	ref_5692_new	25	55	36	30	54	24	59	37	64	21
GTCTGTTAGTAGGAGT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
GCTCGTGAGTTTGATT	ref_5692_new	11	19	11	8	17	12	12	9	23	10
TCAGTTCAGTCTTCGA	ref_5692_new	19	29	26	27	40	24	48	20	39	19
ATCTCGAATGGGCCGA	ref_5692_new	27	43	37	24	41	29	49	22	43	24
TCCCCTTTCTTCGTTT	ref_5692_new	34	88	45	47	81	43	74	62	92	42
TCCGCTCGTGAATTTT	ref_5692_new	10	14	16	6	12	9	16	14	8	9
CGTATCCCGCATAGAT	ref_5692_new	51	63	60	40	64	25	77	33	53	52
TAGCTCATACAAGTAG	ref_5692_new	14	16	17	12	13	6	19	13	14	7
CCGTATATCTCATCTT	ref_5692_new	24	25	21	15	32	21	29	14	34	17
TGTTACTAATTGCTAG	ref_5692_new	14	11	14	9	22	10	12	4	13	5
TTCGATATGTTTTTAG	ref_5692_new	19	35	34	16	44	19	54	16	41	9
TGCATTTCATGGTATA	ref_5692_new	11	11	14	13	24	7	15	7	15	2
AGGTTGGAAGTCGCCC	ref_5692_new	1	2	0	0	0	0	0	0	0	1
TAACCTTATTTCTAAG	ref_5692_new	111	161	133	100	176	106	198	93	196	114
TACAGCGGTACCGATT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
GTAGGTTTAGCGACAT	ref_5692_new	4	7	8	7	10	10	9	5	17	6
TGTCGTCCCATGGTTA	ref_5692_new	0	0	0	0	0	0	0	0	0	0
GAAGTATTGATGTCCG	ref_5692_new	56	95	92	66	80	77	106	65	124	75
CTCTACGGGTACGCGG	ref_5692_new	43	64	52	45	68	34	66	40	78	40
TTTTCACTAGAGTAGG	ref_5692_new	17	33	21	34	30	36	34	17	48	28
AAGGAACAACCGGGAG	ref_5692_new	0	0	0	0	0	0	0	0	0	0
TCCCAGTTCCCAGTTT	ref_5692_new	0	3	2	0	2	1	2	2	0	0
CGCAGCAAGTCCGACT	ref_5692_new	17	35	15	14	43	27	28	18	35	19
CCGATTGAATCGATAT	ref_5692_new	17	18	26	26	31	14	21	20	29	11
AATACCCTCTTCAAGT	ref_5692_new	6	3	8	5	9	5	11	2	6	5
CGTGGTACCTATTTCC	ref_5692_new	0	0	0	0	0	0	0	0	0	0
TTTATTCGGTGGCCGG	ref_5692_new	43	69	53	46	63	30	87	41	66	47
AATGTTACGGCACTCC	ref_5692_new	4	10	9	1	6	0	12	3	15	4
GGGACAACTGCTAATT	ref_5692_new	17	37	25	22	28	24	19	15	35	20
CTTGTCTCTATATTGG	ref_5692_new	68	82	78	47	78	63	105	57	83	49
TTGTGAGTCGTTTAGC	ref_5692_new	39	69	23	33	78	32	82	32	74	25
AGCACCCTGGATAGGT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
ACCTTCTATTGAAAGC	ref_5692_new	7	10	5	5	13	2	10	2	9	3
TGCACGACTAACCTCG	ref_5692_new	8	8	6	4	16	4	11	8	6	6
TGACAAAGACCCGAGC	ref_5692_new	5	11	4	5	16	13	17	12	20	11
CATATATGTGTGTGGC	ref_5692_new	100	215	120	110	196	109	183	84	210	73
TCATTTCTCCAGCCCC	ref_5692_new	12	9	17	11	4	6	15	4	3	6
GGTCCTTGTAGCCAGG	ref_5692_new	0	0	0	0	0	0	0	0	0	0
ACATAACCCACTTGTA	ref_5692_new	1	6	3	6	13	1	17	0	8	0
ACCGCAAGGCTCCCGT	ref_5692_new	3	7	6	2	7	1	15	9	12	2
AGTTGCGAGACTTTAT	ref_5692_new	3	7	7	5	9	3	6	3	9	1
GTCGACTATATCCAAA	ref_5692_new	21	36	29	29	36	30	44	38	47	23
GCAAACACAAGTCTGG	ref_5692_new	1	2	0	2	2	1	8	4	1	1
CCATCCGACAATAGCT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
AGACTCAATGGCCTAG	ref_5692_new	4	13	13	7	14	12	18	16	17	14
CATCGTCTCGTCCGAG	ref_5692_new	17	30	27	12	30	16	32	21	44	13
CTAATACACATCCGCT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
CGCATTCAGTATACAC	ref_5692_new	30	62	31	30	60	32	61	24	61	20
AAACATTCCGTATTAT	ref_5692_new	6	3	2	1	12	6	4	7	10	2
CTTTCGTATCTATTTA	ref_5692_new	0	9	2	2	5	3	6	1	7	2
CAGCAATCTTGGAGCG	ref_5692_new	14	24	8	9	12	9	12	9	23	10
GGAACTCTGGGGTATA	ref_5692_new	10	29	23	25	40	10	37	19	30	19
GAATTTTGTGCTTTCT	ref_5692_new	24	49	33	24	47	24	30	22	48	15
GAAGCGGTAGGTCGGT	ref_5692_new	23	29	22	20	29	11	30	10	42	15
CAAGCTTGGGTTTGCC	ref_5692_new	11	38	16	11	42	19	49	19	37	12
TACGGTCGAGGTCTAC	ref_5692_new	1	13	6	1	10	4	9	2	6	2
ACGATTCCGTCTTCCT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
CGCGCTTTCTGACTCC	ref_5692_new	72	119	89	68	124	69	147	51	129	68
ATGAAAGACGAGTACA	ref_5692_new	7	20	20	9	21	20	25	10	18	22
CACATGGGCAGAAGGT	ref_5692_new	6	11	13	9	15	12	11	3	15	5
GGTTATCCCACACGGT	ref_5692_new	5	10	9	3	9	7	11	8	9	6
TTCCGGCTACTTTAAA	ref_5692_new	24	43	32	25	45	20	23	22	32	20
TGCGCTACACGCCTAT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
GCCGGTAACTTTTGCT	ref_5692_new	10	42	25	14	36	19	29	8	28	17
TAAGTCTCTTCTTGGG	ref_5692_new	70	110	71	51	119	50	120	42	130	59
CTATTCGACCTATAGC	ref_5692_new	7	4	9	5	14	5	10	11	12	8
AAACACGAAGATTGCT	ref_5692_new	18	27	30	24	52	21	36	30	31	18
TTCTCTACCGCTTTGC	ref_5692_new	23	78	50	30	65	26	54	39	87	34
CAAAAGCGGGAAACCG	ref_5692_new	8	12	7	12	13	8	8	6	10	7
TCTGGTAAATATTGAT	ref_5692_new	6	17	10	7	17	9	9	7	9	9
GAGCGGCCGATTCCTT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
GCCACACGGAATCGTC	ref_5692_new	0	0	0	0	0	0	0	0	0	0
TAATGCGGTTGTAGAT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
GCTTGGCCCTTGGGCT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
AAACCTTATTTCTAAG	ref_5692_new	0	0	0	0	0	0	0	0	0	0
AGTTCCACCTTACCTT	ref_5692_new	1	10	0	1	14	2	19	1	13	2
GGAGGTTTGTGCCTTC	ref_5692_new	1	0	0	1	1	1	1	0	1	1
ACAGTCACGGTCGCTT	ref_5692_new	4	6	0	7	3	1	3	3	8	0
GCTTTGCGTTTCACTT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
ACCGGATATTAAACCG	ref_5692_new	15	25	20	19	38	16	41	19	29	10
GGGTTCTGGTTATCTG	ref_5692_new	46	78	49	49	88	45	91	46	80	49
GAGCAGCAATATCTTT	ref_5692_new	17	47	45	29	55	32	46	28	49	19
TTCGCGATCTGCCAGC	ref_5692_new	18	32	9	21	26	12	33	21	31	14
GCGGATACTTAGGATC	ref_5692_new	14	51	37	23	33	25	37	21	45	23
CGTTCGGAACACACCT	ref_5692_new	0	0	0	0	0	0	0	0	0	0
TGATTGTGGTTTTCCA	ref_5692_new	6	10	9	4	12	6	8	5	13	3
ACAGTAGGTGTATTTC	alt_378_upstream	33	37	45	37	59	37	56	23	53	28
CTGCGGGTGGCTTGGT	alt_378_upstream	97	159	128	95	129	115	135	109	159	86
ATATGGTGCCCGGTAA	alt_378_upstream	39	49	46	35	44	37	46	36	43	23
ATCGTCGGTGAGGCTG	alt_378_upstream	9	13	26	17	17	9	28	15	22	10
CTACGCGTATTTTAGC	alt_378_upstream	15	13	15	23	29	11	20	12	21	10
ATATTTCTCGGCGAGG	alt_378_upstream	85	109	74	80	90	69	104	61	95	68
TTCGGAAATGGATTCT	alt_378_upstream	13	21	16	12	26	27	21	7	19	15
TAGGACTCAATCTACG	alt_378_upstream	37	69	43	43	42	42	56	32	52	36
CTACTGCCGGTCATCG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGTCTCCCGGCGC	alt_378_upstream	45	44	54	37	43	48	52	39	47	40
GGGCTTAGGCTAATAG	alt_378_upstream	30	34	27	37	33	20	50	19	39	21
TAAGCAATCGTGCGTT	alt_378_upstream	14	38	34	26	28	25	53	15	43	20
CAACTTGTTGATATAT	alt_378_upstream	63	89	77	71	90	47	94	53	77	38
CCTTTCGTGCCGCGGT	alt_378_upstream	10	14	11	11	18	12	10	12	17	10
AATTTTGGAGTTAACT	alt_378_upstream	3	4	5	2	2	1	0	0	3	0
AATCGTATTATGACCC	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTCGTGGCGGACA	alt_378_upstream	40	61	43	37	42	32	49	33	52	31
CAATTCGAGGGGTCAA	alt_378_upstream	13	13	7	5	10	9	12	9	15	10
TTCTACCAATGGTGCA	alt_378_upstream	20	29	28	27	29	25	34	22	39	28
ATTACCTCATTTGTTT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCGTAGATCCGTT	alt_378_upstream	190	246	207	209	249	190	241	178	330	181
TTCCTGCAGTCGTAGT	alt_378_upstream	66	96	73	81	87	60	99	66	78	58
AGCTTGAGGGTGCGGC	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTTACACACGTTA	alt_378_upstream	14	24	28	10	29	13	33	19	35	14
CGGTCCCGAACGTCAC	alt_378_upstream	7	4	13	8	7	9	5	8	14	14
GACGTCTACTAATTTG	alt_378_upstream	27	49	39	27	46	26	60	32	51	18
AAAGCGTACGTCTGGG	alt_378_upstream	8	9	11	21	20	10	38	14	20	11
CTGCCAATACGGCTAG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
GCGAGTTTTTGTTATC	alt_378_upstream	54	59	67	61	85	61	60	36	87	45
CAGCGCAGTATACCTG	alt_378_upstream	6	6	9	5	11	5	10	6	10	4
TCGCGCCTAGTGAATT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGGAGTGACCCT	alt_378_upstream	21	31	29	20	25	16	31	18	29	21
CTATGCAAGTTCTTAC	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
ATTACCTTCTCAGAAC	alt_378_upstream	5	7	5	5	13	4	10	2	6	2
TCCCACAGGTGAGCAG	alt_378_upstream	29	32	34	26	27	20	33	26	29	25
CAATGTGGTCCATGAC	alt_378_upstream	33	48	42	33	43	38	46	47	54	51
CTCAAATAGCACGCTG	alt_378_upstream	11	27	15	13	34	16	37	17	24	14
TGTATAGTTCTAGGAT	alt_378_upstream	7	13	13	11	18	14	19	10	16	8
CTGTATCGCAAGTATG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGAATAAACTTAT	alt_378_upstream	32	45	34	33	31	27	39	23	45	33
GGACGATACAGCTTTC	alt_378_upstream	145	198	194	173	203	154	187	154	213	156
ATGCTATGTCCAGGGG	alt_378_upstream	25	32	36	33	37	30	18	23	29	21
CCCCAAAGCAAGTTCC	alt_378_upstream	7	5	9	8	13	8	7	11	8	10
ATAGTGACTCTCAGGT	alt_378_upstream	9	4	12	5	21	11	7	12	5	3
AATACAAGCGCGCGAT	alt_378_upstream	57	52	64	51	59	57	61	44	64	56
TCAGTGCGTTCACCTT	alt_378_upstream	14	23	11	10	33	11	24	12	22	12
AACTGATCTCTACACT	alt_378_upstream	34	79	39	47	70	43	74	54	87	33
TGTGTTTTCTACCATC	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCCCTGCCTGGTT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTTCCCGGATTGC	alt_378_upstream	9	11	13	6	15	13	5	10	24	8
TCCTATTATAAACTTC	alt_378_upstream	2	4	2	2	3	2	5	4	1	7
TGTGCCTCTGTATGCA	alt_378_upstream	12	17	12	12	25	9	11	14	22	9
GACCCTTAGGCACAGA	alt_378_upstream	57	85	91	61	95	77	86	45	97	70
ATCACAGGGACTCAAG	alt_378_upstream	39	44	37	16	37	27	31	23	40	25
GACGGCAGTTACGAAC	alt_378_upstream	15	23	28	13	15	11	27	16	27	8
CTCAACCTGGTCATAC	alt_378_upstream	12	17	8	5	23	12	15	10	12	9
TAGATCTTCGTTGTTT	alt_378_upstream	38	34	27	20	51	24	34	29	26	15
TGCCTTTTGTGTAAAA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTGCTATTAATAT	alt_378_upstream	29	52	33	32	44	36	55	34	51	31
CTACTGGCTGGACATA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TCGAACGCGAGCTAGT	alt_378_upstream	22	16	18	15	35	11	24	15	25	11
GTCGCCCAAATTGCTT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTTGGCGGTTTGG	alt_378_upstream	10	9	8	17	19	15	14	5	16	7
CGTCCGCTGATGCTTT	alt_378_upstream	16	21	21	16	26	15	38	32	38	10
CAGTTAGCGCTCAAGT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCATACCCCCCCG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCACGTAAACATC	alt_378_upstream	42	62	57	49	82	56	67	53	85	35
ATCAATGTCATGTTGC	alt_378_upstream	68	92	76	61	90	48	96	62	73	67
GATCTCTCACACTACC	alt_378_upstream	37	46	36	42	45	29	51	29	58	27
TAAGTGTATCGAAGTT	alt_378_upstream	36	53	58	36	55	32	53	38	48	39
CTGTAGCCCGGGCGAA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAGGGATTTTATG	alt_378_upstream	22	27	12	14	16	10	48	25	24	22
CCGCACGTTATTGGTT	alt_378_upstream	15	41	17	20	60	19	53	10	61	15
TCCGGTATTCCTGCAC	alt_378_upstream	5	7	11	4	4	2	6	1	5	3
TTGACGTGGCTGTCTT	alt_378_upstream	3	4	8	9	11	12	7	1	5	10
TATTATACTTAACGTT	alt_378_upstream	48	89	85	63	79	56	102	55	77	56
CCTACCAAAATTGTTA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGTTGGGCGTTAT	alt_378_upstream	15	25	25	11	26	21	21	9	24	4
TAAGTTTGGCGCGCTA	alt_378_upstream	6	4	2	6	4	3	11	0	6	2
AAGATTGCGCACATCT	alt_378_upstream	17	20	15	27	23	27	23	15	22	27
GGTTCCGATCTCTTGG	alt_378_upstream	42	44	49	28	43	29	51	29	37	18
GCTTCCATAGAGCGTA	alt_378_upstream	30	33	27	27	47	18	40	26	45	17
TCTAGTAGCTTTTTTT	alt_378_upstream	8	18	15	12	29	14	14	16	14	10
GTTTGCGCCCAAGTAC	alt_378_upstream	15	28	30	16	30	14	24	36	28	19
TCATTCCTTTACGGTC	alt_378_upstream	25	28	30	25	30	32	25	27	27	19
GTGCGTATCAAACATT	alt_378_upstream	5	6	7	6	13	5	9	5	15	9
TCCTGTCAGCAATTGA	alt_378_upstream	22	18	34	19	27	16	26	19	24	15
CTATTTCGGAGATCCA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
ACACTATGCTTTCTAT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
GTACACGGCCTGTATT	alt_378_upstream	5	7	6	3	5	3	7	8	6	2
CGGGATTTGATAGGCT	alt_378_upstream	77	78	98	81	89	79	110	83	119	88
ATGTGGTTGAAACTGC	alt_378_upstream	44	51	76	62	57	58	62	50	56	32
TTGTTATACATTGCAA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGCGTCGGTGGG	alt_378_upstream	62	63	92	60	77	49	68	46	58	58
TTGGGATGGGTAGAGT	alt_378_upstream	41	55	56	34	51	35	53	21	64	24
CGGGTTTTCGACTTCG	alt_378_upstream	111	133	128	109	140	102	130	84	141	97
ACTCAGTCTGGACCGT	alt_378_upstream	7	15	16	14	17	9	17	11	23	4
AAGCTTTATAAAGTCT	alt_378_upstream	0	3	1	3	2	1	2	4	2	0
TAAGGGTTATCATAGT	alt_378_upstream	9	13	17	18	14	13	11	15	16	11
CGTCTCTTTCATCCTG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAGGAAAGGGGTA	alt_378_upstream	31	26	32	24	28	21	36	27	31	16
TCTTTATTTCTACCTT	alt_378_upstream	61	94	78	64	91	47	80	55	97	54
TAATTTAATCCCATGC	alt_378_upstream	99	107	138	113	136	89	129	91	133	97
CAGGGCGCCTAAAGTT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCAACGGTACAC	alt_378_upstream	16	22	14	11	20	6	15	12	22	7
ATGGTGAGTGCTTATG	alt_378_upstream	26	61	45	38	66	29	63	32	56	42
GGTATAGCTTTACTTA	alt_378_upstream	8	8	9	8	7	6	11	3	8	9
CAGTTGCACATTGCGA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
CACTGGTCTGGCACAG	alt_378_upstream	15	16	12	9	18	6	13	4	6	10
ACCTTTACCACCCCTA	alt_378_upstream	34	32	29	30	59	27	39	30	39	31
ACTGTATCGAGACTCG	alt_378_upstream	37	61	38	33	50	34	64	28	43	35
TTTCAAGTGCTATTGG	alt_378_upstream	9	18	14	10	13	3	15	19	10	3
TGCCGGATCTTAAGTT	alt_378_upstream	12	10	8	10	20	7	15	10	11	7
TGTATAGTCCGCGCGG	alt_378_upstream	25	39	20	14	19	22	16	16	26	8
CCTAGCGTTTATCCTC	alt_378_upstream	6	31	2	9	29	5	32	3	31	3
TGCTGTCAAGCAACGA	alt_378_upstream	30	27	29	25	28	16	33	23	33	19
AGTACAGGTCAGTGAG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
CATTTCCTACGTAGAC	alt_378_upstream	17	26	8	10	9	12	17	12	22	7
CTGGTTAATCATTTTC	alt_378_upstream	28	37	36	33	37	25	49	38	40	20
TTCACATTTTCATAGG	alt_378_upstream	15	14	21	14	23	13	21	17	12	13
GCTGCGGTCCAGATCG	alt_378_upstream	24	31	24	16	18	16	34	19	23	19
TCACCTTGGCATGTCT	alt_378_upstream	8	16	20	10	29	12	18	8	24	7
CGCCTATGGTTCGGAT	alt_378_upstream	3	15	8	10	20	8	16	5	19	4
GTCACGCTCGTGTCGG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCGGTTCTGTACG	alt_378_upstream	102	107	107	89	112	67	115	86	127	79
CTTTTTCGTCTTTGGT	alt_378_upstream	6	2	5	1	7	1	7	3	3	6
ATGAGCGCGAGGTCCG	alt_378_upstream	20	35	37	31	35	18	31	23	31	25
AGGACGCATCGGGGCA	alt_378_upstream	6	4	3	2	4	3	3	4	5	1
CCCCTGGAACAAGATT	alt_378_upstream	10	10	7	14	16	4	13	11	17	5
CCGATAGGTCCTACGG	alt_378_upstream	12	19	18	15	18	12	19	10	27	13
GCACGATCAGCGTTAT	alt_378_upstream	0	1	6	1	1	0	1	3	2	2
GGCGGTTAGAGCTGAT	alt_378_upstream	12	13	22	10	16	15	9	14	18	13
CGTCCCGATAGCTAGA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
AGCGATTAGTTAATGA	alt_378_upstream	18	40	22	18	28	15	30	14	30	18
ATCATCCACCCTTCTG	alt_378_upstream	35	40	33	38	46	34	40	27	44	26
ACGTGACGCATGGCAT	alt_378_upstream	17	17	22	16	22	17	27	19	19	24
ATGGGCTAGGGTCTTA	alt_378_upstream	24	53	46	19	39	21	36	32	36	31
GTGCGTGTCAATCTAA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTCCCTTATTCA	alt_378_upstream	28	67	43	25	56	40	55	28	50	47
CATTCAGTTATCGGGT	alt_378_upstream	63	59	67	67	72	59	71	72	90	60
CTAAATTGTTTCTTTT	alt_378_upstream	57	96	72	73	91	48	102	91	99	84
CCACGTAGGTTTTTAC	alt_378_upstream	6	8	9	4	6	7	32	7	12	5
GGTCCTTATTTTTCCA	alt_378_upstream	23	30	27	19	33	30	33	22	43	25
ACCGTGCTCTATTAAC	alt_378_upstream	4	4	8	5	11	6	11	5	8	3
CGAGGTTGCAGTTCTC	alt_378_upstream	8	10	5	16	4	8	4	4	8	7
GTTATTGCATGTTAAC	alt_378_upstream	25	24	24	15	27	17	29	9	15	16
GTGGGGAATAGGCGCT	alt_378_upstream	11	15	22	18	20	13	16	6	20	9
CCCGTTCACTCGTCTA	alt_378_upstream	5	8	7	4	6	6	6	3	2	3
GCGTCGGTACAACGTT	alt_378_upstream	5	7	4	2	9	6	3	6	4	7
TCAGTCCGTGTTCTGG	alt_378_upstream	22	30	27	28	38	14	23	21	34	21
TCTTGTAGGGAGGCAC	alt_378_upstream	32	43	60	35	63	43	61	32	70	28
CTTGCATAACGAAATT	alt_378_upstream	32	23	27	29	19	35	30	27	27	21
TAATGACCTCTCAGCC	alt_378_upstream	16	25	14	21	20	22	30	21	18	22
AAATTTAATCCCATGC	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTTATAATTCAGT	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
GCCATAGTTCCCCCCG	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
TACAACTCAGTCATTA	alt_378_upstream	0	0	0	0	0	0	0	0	0	0
AATGACGCCTATTGGT	alt_378_upstream	13	18	10	13	13	12	18	10	15	2
AGTGCAGCCATTTTCA	alt_378_upstream	4	3	5	5	0	3	0	3	3	3
GGTAATATTCGTGTCG	alt_378_upstream	18	27	42	18	33	11	27	21	35	19
AGCTCGTACCCTATAG	alt_378_upstream	10	11	12	13	21	8	26	19	16	11
CCGTTCCATGTTATTT	ref_940_fdr	37	45	52	52	38	28	51	36	48	22
CCCACGCAGCAGTTTT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGCTTGTTACGGT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGTGATCTGTCTG	ref_940_fdr	37	38	39	51	25	35	45	26	37	41
ATCGACGTCAATTACG	ref_940_fdr	9	10	9	13	13	7	13	12	9	6
GGCCACTACCACATCG	ref_940_fdr	16	21	17	30	12	14	19	15	22	6
GGCTGTCGCTGTTCCC	ref_940_fdr	10	18	27	13	19	15	20	15	19	16
CGTTACGGCGTACTAC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TATGTCTTAAGCCTCC	ref_940_fdr	18	12	28	41	16	34	15	29	24	18
TTTCTTTTAAATTCGG	ref_940_fdr	18	8	15	15	17	21	24	19	15	11
ACGCTCTCGTAGCATT	ref_940_fdr	51	45	63	54	71	48	57	56	47	47
AGTAATGTTTTCCGCG	ref_940_fdr	27	23	27	25	34	24	30	28	38	21
CGCACATCGGGTAGGG	ref_940_fdr	14	20	35	25	28	17	17	18	23	25
CACTTAAGCAATGTCC	ref_940_fdr	16	23	32	21	20	23	22	25	19	22
GGGAGCATGACAAAGT	ref_940_fdr	61	62	58	49	38	52	44	47	39	52
GTATAACGCCGTGGGA	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTCTTTTGGATAT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GTAATTTGGTTACCGG	ref_940_fdr	47	61	81	42	44	61	48	59	45	40
AAACTATATATATTTG	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCTAATCGTACAT	ref_940_fdr	46	39	56	41	50	43	43	33	24	22
CCCTATTAAATTAGTG	ref_940_fdr	131	120	131	124	115	105	135	87	124	113
TAGGAAAATTGTTACC	alt_940_fdr	8	11	13	17	16	24	12	6	9	9
GGAGGGCAAGCCTTCC	ref_940_fdr	20	20	32	27	23	14	25	13	23	17
GATCGGAGGCATATTC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTTGGGCGCTGG	ref_940_fdr	129	106	144	140	112	130	96	123	95	116
CCGAGCGCACTGGCTT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
AACAAAAGATGTTTGT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGGGAATGCTGAG	ref_940_fdr	5	3	8	12	1	4	3	9	2	3
GTATAGATTCACACTT	ref_940_fdr	10	5	2	6	3	10	5	4	4	3
GGTCCAATCGGTCGTT	ref_940_fdr	76	86	97	92	94	82	91	96	73	75
CCTTTATGACATGTAG	ref_940_fdr	37	29	26	25	38	27	22	11	24	18
TACAAGCGAAGACAAC	ref_940_fdr	30	20	33	29	22	22	16	9	22	20
AATGGTATTCAGGGTT	ref_940_fdr	28	24	36	27	19	29	23	24	16	23
AGCATTTCTATGTCGT	ref_940_fdr	23	20	32	19	21	31	22	24	20	25
TGCCGGTTCACGTCTT	ref_940_fdr	20	13	16	13	8	7	9	14	23	10
CACCACGCATTCAAGT	ref_940_fdr	12	21	11	16	11	14	20	13	19	7
TCACGTTCGTGCGCGG	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
ATATTTCCAACGATGC	ref_940_fdr	48	40	59	62	38	66	50	61	54	48
GTAAGATATACGCTCT	ref_940_fdr	30	31	35	34	37	24	34	15	35	24
CGAGGGTGTCATCTCC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTTAAAGCTCTCA	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCTTCAAAGATAT	ref_940_fdr	54	56	51	43	46	58	49	39	55	38
CTAAAGTTTGTGTACT	ref_940_fdr	55	42	42	45	46	48	40	44	45	31
ACCGTTACGTTTTGTT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGTCGTACCGTT	ref_940_fdr	16	15	19	18	17	14	11	10	12	16
CCATTTTGCGATCCAC	ref_940_fdr	50	43	53	51	46	33	44	63	43	34
TCTTGTTATTATCAGT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TAACATTTATCTATGG	ref_940_fdr	3	1	8	1	2	3	5	2	5	3
AACGCCATATGGGCAT	ref_940_fdr	67	54	78	35	72	43	37	52	49	35
TTAATGTAGGGGCGTC	alt_940_fdr	29	14	23	26	26	26	22	20	29	28
AATACACAAACTTCTG	ref_940_fdr	13	20	18	13	11	13	8	16	9	12
TTAGCGCAGAAGATGC	ref_940_fdr	34	49	40	58	43	37	38	36	38	37
CCTGTAGATTTTGTGC	ref_940_fdr	6	20	12	3	12	2	13	5	13	5
CCGCCCCGTGCAGTTT	ref_940_fdr	268	278	327	286	312	262	248	268	307	199
TGGACAAGTAGCTGTA	ref_940_fdr	19	26	35	30	29	30	21	27	27	19
TAGGGATTGGGCCCCC	ref_940_fdr	8	14	7	15	9	12	24	4	22	6
CTGCGAATATGAGGAT	ref_940_fdr	19	26	45	26	26	26	16	26	21	32
ACATTGACCGGCGTTG	ref_940_fdr	21	33	44	36	25	41	47	33	37	29
CCCAAATCTGTTCCGG	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGCTTTATTTGAA	ref_940_fdr	18	20	31	15	34	19	25	20	25	20
CCATTACTGGATCGCG	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTATTTATGCCTT	ref_940_fdr	24	20	43	33	22	17	24	25	20	20
CGGCCTGAATCACACA	ref_940_fdr	20	16	20	20	16	20	21	23	17	19
GTCACAACCGGCGAGG	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
CGACGCACTACCACCT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTCTGAACCATTT	ref_940_fdr	28	30	21	21	18	35	17	30	36	35
TAATGTTTGAATCCAT	ref_940_fdr	32	35	36	42	43	44	43	45	46	33
TTACACTATGAAATAC	ref_940_fdr	29	26	52	54	35	37	40	41	46	30
TCAGCGCGCATATAGT	ref_940_fdr	82	90	85	93	109	65	103	68	97	55
CTCATCCTGGTCTAGA	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCCGGACTTAGAA	ref_940_fdr	13	15	10	4	11	17	9	9	12	4
CGCCCAAAAGGACTTG	ref_940_fdr	20	20	33	29	14	26	28	39	23	21
GCTATTGCCTACTTTC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCCTTGTGATGGC	ref_940_fdr	26	23	44	37	28	23	25	15	18	33
TGGAGTTATGGTTCGT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTAGCCACTGCCT	ref_940_fdr	89	111	121	111	116	91	94	85	111	78
TATAATATTCCGACGC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
ACATGCCATGCCCCAC	ref_940_fdr	16	25	40	26	23	25	33	20	35	32
ATTTAGAGTAATGTAT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TCACATCGTCTACTGG	ref_940_fdr	27	22	32	32	41	19	41	22	27	18
TTATTGGTCTAGAACT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GCACGAGTTCGACTGG	ref_940_fdr	4	4	1	8	5	4	6	4	2	3
GATTTCATGAAAAGAG	ref_940_fdr	12	10	17	5	10	13	7	7	6	9
CTCACACACAGAGTGC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
AGAATCGTATCGGAAG	ref_940_fdr	10	6	10	9	8	11	9	13	8	8
GATCCAGAATCATCCT	ref_940_fdr	36	33	39	44	30	41	46	36	47	32
ATCGTGAAGCGTCGAG	ref_940_fdr	29	39	46	43	38	27	39	45	39	29
GTCACCGGGTTTTCAC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
AATCGGTGTATTTAAA	ref_940_fdr	15	13	12	9	9	11	7	12	12	5
CTCAGATGGCTGTCCT	ref_940_fdr	45	58	59	59	53	51	46	50	36	38
GACTTGAGAAATACCC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTAAGACCCTTGC	ref_940_fdr	16	31	11	16	20	9	26	14	23	9
TCTCCTCGGGTATTTC	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GTGCAAAGCCCAAGCC	ref_940_fdr	5	11	2	7	3	8	11	13	7	7
ATATGATTTCCCCAGA	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TGACTTTTTGATCCGA	ref_940_fdr	64	44	83	74	47	73	67	59	53	65
ACTACACTGTACGGTG	ref_940_fdr	9	2	12	5	1	6	6	6	4	6
CTAAGAGCAAGCGATC	ref_940_fdr	84	112	136	88	103	88	117	88	94	88
CAACGGGAATCATATT	ref_940_fdr	15	25	28	17	19	21	25	15	21	21
CCATATTGGGACGGAG	ref_940_fdr	68	69	77	64	73	56	72	72	66	52
ATCGGTAGCATCTTAG	ref_940_fdr	38	25	46	50	30	34	32	34	31	26
AAGGGAAAAGTAGATA	ref_940_fdr	48	53	68	50	45	53	56	71	51	45
ACATTGTGGTAATGAG	ref_940_fdr	3	11	9	11	6	4	9	13	9	11
TTTGAATCACAGACAT	ref_940_fdr	13	9	15	8	15	12	10	12	12	14
CCGAAACTGTAGTGAT	ref_940_fdr	17	24	41	36	27	42	26	28	18	23
GCCATCTCTCTATTCA	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCACTAGCCGCCG	ref_940_fdr	23	18	19	12	17	14	19	19	29	13
ACTCAAATCGGGCATT	ref_940_fdr	19	16	27	36	12	13	23	20	29	24
GAGTTGTTGTTCGAAT	ref_940_fdr	48	44	55	75	52	46	70	42	59	57
TAGCCAGCCGTGCTTA	ref_940_fdr	55	56	69	36	49	42	66	40	38	56
GCTTATGCACATCATT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GGACGCATTATCGTTC	ref_940_fdr	65	46	67	42	60	52	58	55	63	43
AAGTGCGACCCTTGCA	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTCCTCTGCCCG	ref_940_fdr	63	26	60	41	28	33	43	39	41	40
GACTTGAATCCTTCCC	ref_940_fdr	10	8	14	19	7	7	13	18	3	16
TTCCCCTTTACTCACC	ref_940_fdr	6	20	6	5	24	7	24	11	27	2
CTTATTTGTTCAAATT	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
GCATCCCGGCAGCTTG	alt_940_fdr	1	5	2	4	0	2	1	0	2	1
AGTAGTCTGGCCATTA	ref_940_fdr	51	56	78	60	63	62	66	50	90	64
CGGGCTTCCAAACCGA	ref_940_fdr	95	64	82	97	92	59	109	82	83	77
TCAATGGTCATTCCTA	ref_940_fdr	67	61	97	66	47	54	65	58	47	72
TTACGGTTGTCTTCAA	ref_940_fdr	0	0	0	0	0	0	0	0	0	0
TGATGCCCGGCCGTCA	ref_940_fdr	116	169	109	111	176	93	144	87	174	84
AGGACGATGACGAATT	ref_940_fdr	138	152	165	130	122	99	118	113	138	117
TCTTTATAGTCTTGGT	ref_940_fdr	3	1	2	3	6	4	6	6	2	7
CTATCCTACTATTCTA	ref_940_fdr	38	33	55	43	38	48	64	44	35	48
CTTCAACGTGTTATCA	ref_4446_upstream	40	61	42	37	63	29	69	26	67	26
GGGGTTGCCGGTTATC	ref_4446_upstream	39	50	33	24	57	31	66	32	57	29
CCTCTGCGAAACCGCG	ref_4446_upstream	15	22	18	13	22	15	38	13	27	14
ATTCACACTCTCGGAA	ref_4446_upstream	24	28	22	18	27	14	49	22	39	8
CAAGTTTCGCACTGGA	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTACTATAGGCTTTTG	ref_4446_upstream	10	36	14	10	21	12	27	9	27	7
GTAAATTAGTTGGTCG	ref_4446_upstream	14	34	38	23	33	15	41	16	37	27
CCGATTATCTCGGGAA	ref_4446_upstream	6	9	7	8	16	8	19	9	22	10
TAGGCACTGTCCGTTT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCTGCTCCTGTTG	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTCTCTGTATTG	ref_4446_upstream	9	23	10	12	34	5	17	9	9	8
TAGTCATCTTGAACAC	ref_4446_upstream	24	64	38	27	82	23	58	36	60	39
ACCTGCAGGTTTGCGT	ref_4446_upstream	23	31	22	16	43	21	52	18	54	28
TTATCGCCGAGATTTT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
ACAAATCCCGTTTTTC	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTATATAGGACCAGTC	ref_4446_upstream	106	200	124	100	188	96	224	109	191	86
GTCTATGCGCCTTTTT	ref_4446_upstream	0	0	1	1	0	0	0	1	0	0
TTGCTGCTGTTACCAA	ref_4446_upstream	11	15	10	4	14	9	17	8	7	10
GGCTTGCTTAGTATGC	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
GCAGATGTCTGCGAGT	ref_4446_upstream	32	40	28	33	42	37	45	20	56	28
AGATGGTTCCCACGAT	ref_4446_upstream	58	73	56	64	62	45	58	42	78	38
TGGTGGCGCACTCCAG	ref_4446_upstream	148	205	179	160	234	119	249	141	241	129
GCTAGGGTGTACTCGG	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGGTGCTCTGGTC	ref_4446_upstream	4	23	12	3	8	5	15	2	12	7
GAAGCTGATACCAACA	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCCGCGCATCAGC	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCCCACTCCACCT	ref_4446_upstream	30	48	47	39	51	38	61	46	56	43
TGGTTGGTCTGTGGTA	ref_4446_upstream	161	243	169	137	273	148	281	137	282	156
TGGATGTCGGTCCCGA	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TCGCACCTATTTCGGT	ref_4446_upstream	16	39	33	33	52	17	33	24	37	20
ACCTTTTTGGGAACCC	ref_4446_upstream	73	107	83	62	86	67	91	63	123	63
GGGTAGCATTTCTCAG	ref_4446_upstream	17	39	41	33	30	24	46	26	51	30
AAAGGGGTTTGCTCGC	ref_4446_upstream	22	17	10	23	26	19	26	11	29	18
CACTCGCCTGACGATA	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
AGCCGTTCTGCTACAG	ref_4446_upstream	9	22	24	15	24	7	19	7	27	9
CCCAACTTTTGGTGTT	ref_4446_upstream	17	28	14	12	34	19	29	13	44	14
ATCGTGCGTTTACTGA	ref_4446_upstream	0	2	0	2	1	1	0	0	0	0
GTCTTACGGAAGCAGC	ref_4446_upstream	5	15	1	5	7	5	8	4	4	2
AAAACGGGTCTGTATT	ref_4446_upstream	16	29	25	18	28	31	34	15	40	17
TCCTCTGATTTCCGTC	ref_4446_upstream	19	11	18	8	13	12	17	7	21	17
TTACTTTGGGTCAGAA	ref_4446_upstream	19	44	30	10	23	18	35	13	27	14
TGCCTAGTTCCCGTCT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TGAGGAATACACATTG	ref_4446_upstream	12	22	23	19	34	10	30	22	32	12
CGCATGTTGTGGGCAG	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TAACTCCTGTTAGGGC	ref_4446_upstream	9	13	13	7	7	7	11	5	15	10
GAGGTAATTGGTTTAA	ref_4446_upstream	58	125	85	84	124	60	136	69	155	58
GCGGCGATGTATTTTT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATCCTACTAACG	ref_4446_upstream	29	32	25	24	39	21	47	27	52	27
TGTAGCGAATTAGCAG	ref_4446_upstream	17	28	37	25	41	23	35	22	46	21
AGTAGTAGCTGTGGAA	ref_4446_upstream	1	0	2	5	2	2	1	2	3	4
TGAGATCAACGTATGT	ref_4446_upstream	26	37	20	14	60	14	31	22	47	14
GAACTAGGCTACCCTG	ref_4446_upstream	19	21	13	8	19	7	16	14	15	11
ATGAGATTAGATGTGC	ref_4446_upstream	11	35	15	16	18	18	26	17	31	9
CCATCAAGTAATTACG	ref_4446_upstream	8	5	11	8	16	11	8	6	16	5
CTCTTTCGGCCAGAGG	ref_4446_upstream	4	5	4	9	7	3	4	4	9	0
CCGTTCATGTTACTGC	ref_4446_upstream	11	53	15	22	67	18	81	14	66	13
GGTCCAATTTGCTAGG	ref_4446_upstream	10	18	15	13	25	10	20	11	23	10
GCCCCTACGGTGCGCG	ref_4446_upstream	18	27	30	12	32	17	24	19	38	13
ATGCTGTTTTTCTGTT	ref_4446_upstream	2	0	0	0	0	0	0	0	0	0
GCGCCTATCACTCTGT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCGTTTGTATCCT	ref_4446_upstream	8	3	7	4	8	5	20	9	17	5
TTCTACTACGTTACAC	ref_4446_upstream	0	6	5	4	2	3	6	0	6	3
CAGAATAAGGGCCGCT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTAATTCCACCCG	ref_4446_upstream	42	77	45	41	49	43	53	50	71	26
TTCGTCGGGTCTTATG	ref_4446_upstream	24	32	31	37	50	24	46	26	33	30
TTGATGTTTTATACGA	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGCGGTTTAGAT	ref_4446_upstream	4	10	15	3	6	8	12	7	17	6
CGTGGTTAGCGTTCCA	ref_4446_upstream	10	33	17	12	27	12	24	11	23	14
TCTCGTTTTCGGCATT	ref_4446_upstream	4	13	5	9	12	8	18	8	7	7
TCCCGAGAACTCACTG	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
CTAACTTGAAAAGGGT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTCACCAGATCGA	ref_4446_upstream	6	14	9	9	10	6	18	3	20	4
GGCAATGTGTCCCAAC	ref_4446_upstream	10	16	12	5	15	10	11	4	22	6
GCGTGTGTCACGGCGA	ref_4446_upstream	50	97	84	78	99	45	88	65	95	52
TGTTCGCTTCTCTTTC	ref_4446_upstream	14	26	21	19	11	12	22	11	28	18
TAAATGTGGGTTCGCC	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGGGATATTAGAT	ref_4446_upstream	2	2	6	4	5	5	4	3	8	1
CTGTACATGACGGAAG	ref_4446_upstream	14	20	20	18	11	15	16	8	20	14
GCTAAGCTCCTCGTAT	ref_4446_upstream	23	52	35	26	53	30	66	21	54	22
GAATCCGTGCGCACAT	ref_4446_upstream	1	3	5	3	9	0	10	7	7	2
TCTTTAATTTGACTGA	ref_4446_upstream	5	9	13	4	10	3	5	6	17	4
ATCACATCTCTTAATG	ref_4446_upstream	4	18	17	8	17	9	15	11	19	12
CCTGTCATGCATCCTG	ref_4446_upstream	9	21	14	16	20	8	22	23	15	13
CATGACCTCTTGTAAC	ref_4446_upstream	27	48	29	25	50	21	28	21	48	30
CAAAACTTTTGATTTA	ref_4446_upstream	4	5	8	6	7	6	8	5	14	9
AGTGTGAGTGAGTTCA	ref_4446_upstream	55	101	59	53	92	52	136	54	130	50
GGCTTCAACAACTGGG	ref_4446_upstream	35	53	23	40	56	37	77	24	46	22
TTCTCTACCTCAATAA	ref_4446_upstream	15	28	30	24	28	26	39	15	35	22
ATTTTAGCGGTCACCG	ref_4446_upstream	50	85	67	55	104	54	123	46	95	49
TTGCTTTCGCGAGTCA	ref_4446_upstream	54	114	82	52	108	59	107	51	121	49
ATTTTCCCTCCCGCGC	ref_4446_upstream	0	3	2	1	1	0	0	0	4	0
GAGGAGTTACTCTAAA	ref_4446_upstream	6	3	7	4	9	3	12	3	14	4
CGTGGTTCGGAATTAT	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
TGATTCTATCTGGTAA	ref_4446_upstream	13	33	24	17	39	14	45	20	32	23
GTGTCCATATGGATGC	ref_4446_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTCGACAACCAGA	alt_6124_new	108	102	106	78	88	80	119	79	127	61
GTTTAGCGCCCGGTTA	alt_6124_new	10	13	12	11	16	9	11	6	11	12
TTCTTCTTTCCGACAA	alt_6124_new	63	57	56	58	54	48	78	59	84	43
ATTGATAATGTCGCAA	alt_6124_new	11	15	19	9	17	11	20	9	13	11
GGTTCCCGGCTAGTAT	alt_6124_new	2	10	1	5	5	3	3	5	9	1
GTGCAATCTGCTCTCA	alt_6124_new	8	17	5	8	13	16	14	7	19	14
ACGATCTCGTTAAGTG	alt_6124_new	3	1	0	0	1	1	4	1	3	1
CGGGTATTCGCGATGA	alt_6124_new	8	10	6	11	7	9	11	8	15	4
TGTTCTTGATATCGTG	alt_6124_new	176	174	167	177	179	150	193	135	188	118
ACTTATGGCATTTTAT	alt_6124_new	66	62	84	47	49	66	54	36	56	46
ACAGCCCCGTTTGCAT	alt_6124_new	13	31	9	8	23	4	26	9	26	8
AATCACAGTTGGTGGT	alt_6124_new	45	70	72	50	48	44	70	49	64	47
CATCTCAATGTGTGTG	alt_6124_new	32	37	55	26	52	41	46	32	50	33
CTCTCATGACAACCAG	alt_6124_new	8	9	6	7	11	9	21	8	9	6
ATATTTCCGCCTCTTG	alt_6124_new	0	0	0	0	0	0	0	0	0	0
GGCTAAAGATATAGTT	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TATTTAGTTAGAATAA	alt_6124_new	13	8	22	18	29	16	21	12	16	18
TGATCGGCCTGCAACT	alt_6124_new	25	19	40	25	23	21	24	25	21	27
AGACTTGTCGCTTGGT	alt_6124_new	61	102	96	75	83	85	90	84	73	75
TTTCGGTCAAGTAAGA	alt_6124_new	28	29	40	25	49	27	41	20	27	22
CGCTGCTCCCGCACAT	alt_6124_new	6	15	15	17	15	13	16	13	17	12
GTCCGCTGCGACTATG	alt_6124_new	60	62	69	59	71	53	47	53	59	60
AGTTAACTGTACTTTT	alt_6124_new	1	1	0	1	3	1	0	2	1	2
AATACATCGGCTTTGG	alt_6124_new	12	7	12	10	14	8	14	11	7	12
CAATGTGATCTTCATC	alt_6124_new	76	51	77	60	71	75	62	59	70	71
CGCAATGCAGACCATC	alt_6124_new	135	200	151	155	214	163	208	141	216	135
GTAAAGGTCAGGAGTC	alt_6124_new	86	100	153	134	93	121	88	121	108	95
TCACAGGCCGCAACAG	alt_6124_new	63	86	97	89	97	80	107	79	96	61
GGCGCGTACTCACGTC	alt_6124_new	165	175	184	154	159	120	195	142	176	134
CTCCTTGCTTTTGTAG	alt_6124_new	78	103	125	90	113	81	116	98	148	65
AGCTTATATCGTACGG	alt_6124_new	51	29	39	29	40	35	30	29	31	23
TCAGAGTAAACCGTGT	alt_6124_new	9	8	12	10	12	5	11	9	13	6
TGAGCTGCATAATATT	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TAAGTTTTAGTGTATT	alt_6124_new	32	41	25	33	36	18	23	26	29	24
TATGATACTGAACCAC	alt_6124_new	205	220	278	219	244	177	249	227	249	185
TGTCTATGGTTAAAGC	alt_6124_new	64	57	71	51	74	58	77	58	86	66
CGCATGGAGTGGAGTT	alt_6124_new	6	9	6	7	7	4	4	5	10	5
TCAGTCATTACGCTGC	alt_6124_new	188	198	199	165	185	193	229	173	233	165
CATAAAACCATCCATA	alt_6124_new	0	1	2	1	0	0	0	1	1	0
AACGACCCAACCTGAT	alt_6124_new	59	44	58	39	34	41	40	39	63	30
ATTGGTTATCCTTGTT	alt_6124_new	0	0	0	0	0	0	0	0	0	0
ATCAACGTGAGCAGGC	alt_6124_new	45	36	47	34	47	38	43	31	49	35
AAAAACACGTCCGCCA	alt_6124_new	0	0	0	0	0	0	0	0	0	0
CCGCCGTGACCAACAG	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TGATACGTAGAACCTG	alt_6124_new	28	22	33	34	54	30	37	37	65	21
TAGTGTCTCTGTTAGT	alt_6124_new	13	18	12	10	14	8	12	11	29	9
TTCACATTACCGGTGC	alt_6124_new	14	13	21	11	19	10	20	10	13	16
GCCTGTGCACTCCGTC	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TATCTATCATACGCAG	alt_6124_new	5	18	12	8	7	13	8	11	20	5
TAGTTCCTGATCATGA	alt_6124_new	86	99	120	75	93	79	84	80	80	91
GCACCTGCTGAGGGGC	alt_6124_new	22	30	14	26	24	18	18	16	22	8
GCTGGGGACTACCCGC	alt_6124_new	47	67	53	58	66	63	59	46	67	24
CGTACCCTGTACTTGT	alt_6124_new	26	22	16	20	26	15	16	16	19	10
TCCGGGCGGGGTTGGC	alt_6124_new	6	8	3	7	4	5	7	11	7	2
TCCCCGACTTCCTTAC	alt_6124_new	0	0	0	0	0	0	0	0	0	0
GTCTCGATCGGTTATT	alt_6124_new	72	93	92	85	82	87	107	74	85	74
CGCAGCAACTACTATA	alt_6124_new	5	16	20	12	30	13	14	18	19	19
GGTTGCGGGTCTGCCG	alt_6124_new	45	44	48	52	55	45	50	51	64	38
TTTATCGCCGCTGGTT	alt_6124_new	1	6	3	7	9	7	7	2	4	8
ACCCCCGCCTTGAATA	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TTCATTTTTATCATAT	alt_6124_new	55	42	52	43	65	51	52	70	47	45
CTCTCATATTCGTTAT	alt_6124_new	13	14	13	20	19	5	13	11	16	12
CATAGCGGCTAGGGCT	alt_6124_new	6	4	3	2	4	9	9	8	4	4
ATTTGTTTGTGTGATT	alt_6124_new	42	33	59	40	53	39	31	33	41	43
TGCAAGGTCACAGGAT	alt_6124_new	2	1	0	2	4	0	3	2	2	0
CTTTTTTCCACAGTGC	alt_6124_new	12	3	12	13	9	7	15	12	4	12
AAAATCGGTGACTGCG	alt_6124_new	28	32	33	28	29	29	31	30	32	32
GTTAACTACTCGCTAA	alt_6124_new	2	0	0	0	0	0	0	0	0	0
TTAGTCTCGGAGGGTT	alt_6124_new	9	11	10	13	10	9	11	5	9	3
GGTCAAGTCAATGCAA	alt_6124_new	203	226	241	173	191	206	250	159	269	170
AGACACTTAATCGGGC	alt_6124_new	65	61	81	69	55	55	64	36	55	43
CACGCCTAGCATATTA	alt_6124_new	10	17	15	21	3	8	15	4	13	7
TTGTGTACAGTCATGC	alt_6124_new	32	38	22	24	28	24	31	18	30	26
TACTTTTATCGGTTTT	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TAAAATGAAAGCGTTC	alt_6124_new	10	7	20	10	12	10	9	8	5	15
AGGTTTTTTGGTTAGC	alt_6124_new	73	74	55	58	58	62	76	45	87	52
TTTTTTCACAACAATG	alt_6124_new	66	52	74	60	66	59	62	65	56	41
ATCACTTGTATCCCGT	alt_6124_new	105	105	113	89	100	89	77	98	95	92
AGAATCAGCACTACTC	alt_6124_new	15	9	20	13	10	9	21	15	16	12
GCCTCCTCCCTGCCTT	alt_6124_new	45	49	52	37	39	46	47	40	56	47
CGGTTTCATAACAGTA	alt_6124_new	19	16	36	24	17	22	21	29	21	23
TTCGTTATACCTGACA	alt_6124_new	6	12	10	3	9	9	4	6	10	8
CTCCGCTAGTGGATCT	alt_6124_new	8	7	3	11	8	6	3	7	4	7
GTATTTGGGCCGTTTA	alt_6124_new	25	19	22	20	13	19	22	20	19	22
TTTGCGACCATGTCTA	alt_6124_new	65	69	94	70	71	46	67	36	73	56
ATGTGACAGAAATGAA	alt_6124_new	9	24	18	21	15	14	13	6	14	4
GTCCAGGATATTTGCC	alt_6124_new	0	0	0	0	0	0	0	0	0	0
GTACAGTCAAGAAGTA	alt_6124_new	0	0	0	0	0	0	0	0	0	0
ATATTTAACTGCCATT	alt_6124_new	10	15	8	9	12	15	8	5	14	11
AAGCTAGCTCGTACTG	alt_6124_new	1	6	8	12	7	4	10	3	3	6
AGAGGCAGTTTTGGCC	alt_6124_new	74	65	63	73	71	73	68	56	67	61
CCTTCATGTTAGTAAC	alt_6124_new	1	2	6	5	3	2	7	2	4	0
TTCAGTTAATATGTAA	alt_6124_new	22	19	35	21	24	20	21	27	21	19
TCTGGCGTGCTTTTTA	alt_6124_new	42	49	44	43	41	45	53	44	55	41
GAAGCCGCTTAATGTG	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TTCTGACCTACTGTTC	alt_6124_new	26	26	18	34	46	21	27	19	32	18
CGTCAACATTTCCAAA	alt_6124_new	0	0	0	0	0	0	0	0	0	0
TGCTGCCCGTGTGGAG	alt_6124_new	63	42	73	59	68	55	64	72	76	59
ACCTTTTTCTGACCGT	alt_6124_new	74	101	79	82	69	64	77	71	95	71
TCTCATCAGACCATAC	alt_6124_new	0	0	0	0	0	0	0	0	0	0
ATGGTAGTGACTTACC	alt_6124_new	2	12	1	0	7	9	19	3	7	1
TCCCTCGGCACGAATC	alt_6124_new	0	0	0	0	0	0	0	0	0	0
AGTTCAATACTCTTGC	alt_6124_new	11	12	25	21	20	14	14	12	20	16
GTTTGATTAAGGATGA	alt_6124_new	122	158	136	141	142	132	164	116	165	116
ACATTTTTTGTGGATC	alt_6124_new	15	9	13	7	9	6	26	7	8	8
TGTCACCAGTTCCTAT	alt_5627_new	11	4	9	5	2	6	5	3	5	5
ATTCTTTGTAGATACG	alt_5627_new	0	0	0	0	0	0	0	0	0	0
AGCTATCATGGGTGAG	alt_5627_new	307	150	337	268	174	271	150	230	139	201
ACATTTCGAATTTTAT	alt_5627_new	0	0	0	0	0	0	0	0	0	0
CAGACTCTATCCTCTC	alt_5627_new	0	0	0	0	0	0	0	0	0	0
GCCGCTACTGGGTTGA	alt_5627_new	42	78	77	75	93	51	88	65	88	53
AGGCCACTTACGTCGT	alt_5627_new	20	9	14	26	20	14	24	25	23	26
CATGCGGGGCAGCGCC	alt_5627_new	72	29	59	56	41	67	47	62	53	59
AGTGGAAACTGACTAG	alt_5627_new	0	0	0	0	0	0	0	0	0	0
CTTCGAGTTGGCCCGC	alt_5627_new	4	14	8	4	6	8	3	9	3	7
CATTATACGTTTCATT	alt_5627_new	36	29	51	38	23	33	29	40	29	31
TTGTATCTACTAGCAT	alt_5627_new	40	23	46	32	35	33	37	28	26	34
CCAATGTTCTGGGTAG	alt_5627_new	24	26	27	19	25	17	23	22	22	19
GTTTGCTAGACCGTTT	ref_5627_new	54	39	41	53	20	61	27	46	30	47
CTTCTCGCATGAGCTA	alt_5627_new	40	29	68	41	31	40	38	39	34	46
CGGGTGTGACCTACTC	alt_5627_new	0	0	0	0	0	0	0	0	0	0
TTGTAAAAGCTTGGTT	alt_5627_new	77	87	104	97	80	79	93	96	83	71
GGGTACGAGTTACCGC	alt_5627_new	30	18	30	26	16	23	19	20	16	18
GACCACAGGCGAGATT	alt_5627_new	0	0	0	0	0	0	0	0	0	0
ATATATGCTTGATACT	alt_5627_new	90	98	130	140	94	99	103	112	95	102
GCGTCGATTTAGGCTC	alt_5627_new	36	31	59	40	21	39	33	43	37	35
CCGGACCCCTACCTTC	ref_1261_upstream	9	22	7	10	15	7	17	10	17	6
AATATTACTACTGCCT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGACCTGAGCACG	ref_1261_upstream	72	60	83	85	66	90	79	81	82	74
GATAAGCGTCTAGCTT	ref_1261_upstream	15	16	18	11	19	19	18	11	15	11
TGAGTCAGCCTTGCGC	ref_1261_upstream	55	73	69	48	57	59	66	45	83	56
AAATCCCTGGGGTCTT	ref_1261_upstream	9	8	10	10	18	6	12	8	11	5
TACAAGATTACCTAAT	ref_1261_upstream	157	142	178	159	152	168	141	133	171	138
TTCTCAGGCTAGCTCC	ref_1261_upstream	4	5	7	5	6	2	9	2	12	3
TGAAGTTTTTTGGGTC	ref_1261_upstream	12	9	13	11	15	15	15	13	14	10
GACAAGACGTAACGGT	ref_1261_upstream	24	27	48	35	48	41	48	32	29	33
TTAGGTCCCGCGGGAG	ref_1261_upstream	11	11	13	21	19	13	15	16	18	12
GACAGTGCCGATTAGC	ref_1261_upstream	35	27	35	25	16	23	35	31	16	29
AGTAAGTAGAATCACT	ref_1261_upstream	88	88	105	86	64	69	95	44	88	68
CATAGAAATAGGCGTC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
AGGGAGCGTCATGGAC	ref_1261_upstream	53	38	39	32	43	38	36	37	33	48
GGGCCCCACAGGCATT	ref_1261_upstream	20	21	38	30	28	30	32	25	36	18
TTTATTGTCACGTGGT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTTTCCATTGGGT	ref_1261_upstream	9	9	4	11	13	2	14	8	6	4
TACTTCTCGTGGGCTT	ref_1261_upstream	15	13	20	10	12	13	9	10	12	9
CGCATCTCCAGTGTAC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTTGCTCGCTGG	ref_1261_upstream	73	53	53	58	53	62	40	44	63	47
TTATTGGTCGCGCCCA	ref_1261_upstream	11	10	8	5	6	5	16	7	8	13
CACTATCACCGTCTGT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTTAGTCGTAAAA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACGGGTCAGCCT	ref_1261_upstream	18	26	16	28	21	21	35	21	34	23
GAGCATGTCTGTGTAT	ref_1261_upstream	27	34	33	26	26	31	33	29	43	14
CCTTAACTACTTATCT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGTATCATGCTGC	ref_1261_upstream	43	35	39	38	34	35	39	29	32	33
ACTACATCCATTCGTC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCCTTTCTCTCAT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTAGCCCCGAAACGCT	ref_1261_upstream	64	46	80	63	52	54	53	75	84	56
AACACAAGCCCAGACC	ref_1261_upstream	18	22	19	7	14	11	15	17	19	12
TTGGGTGGACTTACGT	ref_1261_upstream	51	43	45	42	58	42	54	26	54	34
TTCGTTCGTCGTTCTT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GATATAACTCAAACGG	ref_1261_upstream	18	24	26	27	28	30	16	15	29	24
CGGCGTATTAGAGGCT	ref_1261_upstream	29	44	40	21	55	28	61	29	62	32
GGTGATATTCGGACAA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TACTATACAGCTTTCG	ref_1261_upstream	8	7	13	5	6	5	15	6	11	4
ACTGTCTAGCTCCCTC	ref_1261_upstream	29	39	32	23	28	23	23	29	33	19
AGGGACAATTGTCCGC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGGCCTTTACAGC	ref_1261_upstream	33	35	28	26	41	22	32	37	37	28
GATGCCAATCTATCGA	ref_1261_upstream	16	24	19	21	14	9	15	22	17	21
ATATCACTCCTCAGGT	ref_1261_upstream	22	37	25	16	43	20	44	14	50	14
CGATTTGTTACCGGCA	ref_1261_upstream	14	16	21	22	9	16	25	20	22	15
TTCAGTTGGAATTTAC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCTAATACACAGG	ref_1261_upstream	37	43	27	27	36	27	50	35	41	37
GTGACGTGTGTACCAA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGTTTTCATTTAA	ref_1261_upstream	48	71	60	47	50	50	55	44	69	51
TTGCGGTGGGACGGTT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCGAGAGGCAACCCCC	ref_1261_upstream	36	33	51	38	33	26	35	34	38	33
TGCGGGCAACCGTATT	ref_1261_upstream	5	9	7	3	2	6	7	10	1	7
CTTTATGCAAAATTGG	ref_1261_upstream	31	34	39	31	41	29	31	23	27	34
AGTTGTCTGTGATCGA	ref_1261_upstream	34	52	42	23	26	37	40	19	32	20
TACCATGTCCTGTGCA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGCCCTTCGCTTC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTTCAATTGCATAAGA	ref_1261_upstream	203	232	247	153	233	194	228	157	223	151
TGATTTTGTTTTGTTT	ref_1261_upstream	21	21	20	17	21	27	31	25	23	16
TATATCAGCATTCGAC	ref_1261_upstream	57	43	64	45	59	56	55	58	62	52
CATATGAAGTCTGAAA	ref_1261_upstream	37	27	33	38	46	29	43	30	36	34
CCTCTTGTGTCGTTCA	ref_1261_upstream	5	5	9	5	12	7	9	5	11	7
CCCTCCGCGTTTCAAC	ref_1261_upstream	29	29	40	23	22	28	16	18	38	22
AATTGAGGCCCACGGC	ref_1261_upstream	3	10	6	3	12	6	9	9	13	5
ACTCCGTGAATTGTCT	ref_1261_upstream	7	3	7	3	1	4	8	2	5	2
TGTCGCAGGCTTAAAT	ref_1261_upstream	23	22	29	26	21	19	32	24	32	17
ATGCTTCGTTACAGCC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GATGTAAGCCTTTGCT	ref_1261_upstream	10	23	16	13	16	12	23	11	22	12
CATATCGGTGCAGGCT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CACTCATTACGTCTTG	ref_1261_upstream	10	11	10	13	12	12	9	13	18	5
GTATGTTTGAGCACGT	ref_1261_upstream	4	3	1	10	11	6	4	2	7	6
TCCATGGGATGAGCTC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TAGGGGCAAACCTTGT	ref_1261_upstream	0	2	2	3	2	5	5	6	2	2
TGGTCTCTTTCAGAAT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGCATGAATTTGT	ref_1261_upstream	43	48	59	52	45	40	48	43	58	43
ATTTTTGGGACTTACT	ref_1261_upstream	10	9	8	2	3	2	4	2	6	3
CCATCTAATTCTGAGT	ref_1261_upstream	32	69	51	36	75	44	77	49	57	39
TAGTCCCGGATTGGTT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTCGATGTGGGAGTAT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TACTTATTTTACATTT	ref_1261_upstream	41	38	52	36	57	43	40	36	39	47
ATAGACGAAATAGTGC	ref_1261_upstream	1	5	2	3	3	1	2	0	4	4
CTCGCGTGAAACTTAC	ref_1261_upstream	2	14	5	11	14	5	21	8	16	7
AAATCTCGGGGAATGG	ref_1261_upstream	17	17	25	12	15	15	20	21	8	14
AATTCAATATCTCTAC	ref_1261_upstream	25	30	45	43	21	32	30	26	23	37
TTGGCACCTGCACAGT	ref_1261_upstream	51	56	59	60	60	57	69	53	77	47
AGTAGGTTCTATCGCT	ref_1261_upstream	58	62	87	79	61	70	67	50	77	63
CGACTGCTTGCAGCAA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCTACAGACGAAC	ref_1261_upstream	0	0	0	1	1	0	0	1	2	0
GCAACTGATCGTGACA	ref_1261_upstream	33	29	28	35	36	27	26	24	29	21
TAGGGGGGTTTTGTCA	ref_1261_upstream	12	20	15	23	21	11	23	16	15	11
GCAAAATTTTCATATC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTGCATAATTGATTTT	ref_1261_upstream	67	72	82	59	58	66	69	57	67	65
AGCTTTTGGAATCCTG	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGTGCAGGTCCG	ref_1261_upstream	97	98	90	80	83	83	99	80	114	67
ATCGTGGAGTTATTAT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTATTGTCTTGCTCAG	ref_1261_upstream	63	63	81	63	74	59	79	62	82	56
CGCTGGCTTTGTAACG	ref_1261_upstream	1	0	1	0	0	0	0	0	0	0
TGAAGGCTGCTTTATA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
AATGTGTATGCAATGA	ref_1261_upstream	3	4	2	4	7	3	6	6	7	3
ATTTAGATCTCCTATG	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACTGGTATCACC	ref_1261_upstream	42	47	52	33	42	36	50	34	45	42
AGTGGTATAGGTGATC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGCGCATTTCCCG	ref_1261_upstream	22	7	9	17	18	14	13	17	21	18
TCTGTATGTTACGAGC	ref_1261_upstream	117	117	158	124	150	124	116	120	160	110
TAAGCTGCTGTGTGAC	ref_1261_upstream	59	93	95	59	109	53	114	56	120	58
CAAGTAGGGGCGGCCC	ref_1261_upstream	24	46	29	31	33	30	40	32	30	32
ATAGGTGCAAGATGGC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCTTGAACAAGCC	ref_1261_upstream	33	15	28	35	27	25	17	30	33	33
GCGTTACTGGTGCCTG	ref_1261_upstream	29	28	38	25	41	32	32	26	39	33
CTTACAGTTGGAGACC	ref_1261_upstream	30	50	28	25	49	27	37	19	52	24
GAACTCATAAATTGAG	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTCGTCTCCCCG	ref_1261_upstream	63	49	63	61	52	58	54	38	60	52
AGTGACTTCAATACCT	ref_1261_upstream	83	100	144	75	112	75	96	90	96	66
TAATTACCCGCTCTGT	ref_1261_upstream	123	117	183	137	124	157	143	129	150	145
CGGGCCTTTGCCGGCA	ref_1261_upstream	27	34	18	28	30	37	28	39	34	25
TCACCCATGTGGGAGG	ref_1261_upstream	44	55	64	55	51	43	63	47	72	60
TCTTGATTTTTGCGGT	ref_1261_upstream	28	38	33	33	43	30	48	31	48	32
TTGTTCTCTGCTCTCT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
ATGTATCAGCGAGTAT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGAGTCCATTAAC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GCGAAGCGGTATCCAG	ref_1261_upstream	28	29	44	33	34	37	32	36	29	39
GACTTCCATTCACTGG	ref_1261_upstream	20	10	17	7	17	14	8	12	16	7
TGTCTTGTTATCTCTG	ref_1261_upstream	37	42	38	44	43	46	43	44	43	27
AGCCTGCCGGTGGAAG	ref_1261_upstream	26	32	18	27	32	23	23	18	28	25
TCTTCTTCGTAGTAGC	ref_1261_upstream	4	5	6	5	2	2	5	8	2	3
CACGTGGTAGTACTAG	ref_1261_upstream	14	13	19	14	18	12	18	10	25	16
GAGTGGTGTATAGTGA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTATAATATAGTA	ref_1261_upstream	29	33	32	31	26	19	33	35	33	32
TTACACTTTAATATAC	ref_1261_upstream	9	7	5	12	16	5	15	6	15	10
TTATTCATCATCGTAG	ref_1261_upstream	12	20	14	15	15	18	14	11	19	20
CTGGAGCTGACAGTTT	ref_1261_upstream	222	227	252	201	226	177	294	191	259	170
TTCAGATTCGTGCCAC	ref_1261_upstream	21	42	36	41	21	27	24	29	26	23
TATCTTGAGCCCTATT	ref_1261_upstream	46	29	78	61	51	55	50	49	54	43
CTCGCACTGGGCGATT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCCGGCCCCGCGT	ref_1261_upstream	93	76	89	92	88	86	99	83	85	71
CCTAGTCTATTCCTGG	ref_1261_upstream	1	5	3	8	8	11	7	4	7	2
TGCCACTTACGATCCG	ref_1261_upstream	0	0	0	0	0	1	4	0	0	2
GCTGCCTTTTAACAGC	ref_1261_upstream	34	26	26	26	38	20	20	19	37	22
TTTTCTCCTAACTACA	ref_1261_upstream	42	35	72	47	41	55	49	44	34	47
AGGAATTTTCGCCCAG	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CTACTACTACCTTTCC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTGTGTTAGGAAT	ref_1261_upstream	92	104	106	104	134	92	122	84	120	82
TATCCTTTCGCCTGTG	ref_1261_upstream	5	3	7	7	5	8	11	8	9	15
GCAAGAGTATTGACTA	ref_1261_upstream	38	34	36	27	35	27	32	36	47	29
TAGCCATTAGATGGAG	ref_1261_upstream	4	7	9	4	1	3	6	6	3	7
AAACTGTCATTCCCTC	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGTCAGTGTCGTT	ref_1261_upstream	45	45	60	49	47	46	47	41	49	40
GTCGGGGATGTATGTA	ref_1261_upstream	17	11	35	14	22	14	22	17	20	16
CATCAAAAATAGCGTG	ref_1261_upstream	43	32	49	51	58	44	49	53	37	40
CGCCCGCTTTCCATGG	ref_1261_upstream	67	50	69	85	54	66	75	64	66	53
TGGAGTCAGAGTAGAT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CACATTGCCCGGCTAT	ref_1261_upstream	6	3	10	2	6	1	12	5	2	2
TCCAGTAGGTATGCTA	ref_1261_upstream	56	58	68	42	60	43	64	51	67	51
AAGCGCCGAACATCAT	ref_1261_upstream	12	6	5	20	16	14	10	14	18	9
TTCGATAAGTCGGACA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCTTCGCTCTCTA	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
TGTGAATCGCGCGTAG	ref_1261_upstream	40	30	49	30	29	27	32	23	44	19
GGGCCCTCGAGAAAGT	ref_1261_upstream	113	100	117	110	82	96	110	82	111	78
GGCGTTACATGTGGCT	ref_1261_upstream	6	13	5	8	10	7	7	12	4	5
TAACACAGATATCCCC	ref_1261_upstream	16	8	13	11	10	17	11	8	13	9
TCACTGTCACTTGGAT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCCGTTGTACGTT	ref_1261_upstream	0	0	0	0	0	0	0	0	0	0
ATAATTCCTGCTGTCT	ref_1261_upstream	329	219	376	334	285	283	286	280	291	310
TTCAGCTCCAGTCAGA	alt_5731_new	4	12	7	4	5	7	11	2	1	2
GGTGGACGGTTATAGT	alt_5731_new	23	40	40	25	43	31	59	32	43	21
TCCGCACTTACGTCGC	alt_5731_new	12	28	18	18	15	14	20	5	20	7
TAACGGTCTACACGTG	alt_5731_new	6	14	8	5	11	7	22	10	10	3
CTGGGCGCGACGGGAT	alt_5731_new	36	59	33	38	54	31	66	40	50	37
AAAACTGTTTTAATGG	alt_5731_new	43	55	48	42	69	33	62	43	73	37
CACTCGAACAGTAGGC	alt_5731_new	62	79	90	57	106	64	94	54	142	53
TTTGGCATCCCTATAG	alt_5731_new	9	18	11	10	22	7	14	10	23	23
ATCCGAAAACAGCATC	alt_5731_new	42	72	57	57	70	65	74	41	71	52
TCCGATACGGACGAAT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CAGTACGAAGTGTCAC	alt_5731_new	17	29	11	7	28	11	26	7	23	13
CGACTATTGGATTTCG	alt_5731_new	29	54	19	30	38	20	39	20	37	8
TTGGGCTACACGCATA	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CAGTTCCAGCTTCGTC	alt_5731_new	18	23	26	17	44	21	43	10	30	15
AGGATTGGAACCGAAG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
ATGATCAATACTAGGT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TGGGACCATCAATCCT	alt_5731_new	5	4	3	5	7	2	4	2	8	3
TCCTTGATAACGATCC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TGTAAGTGTGTTCGCC	alt_5731_new	2	2	0	1	1	0	3	1	6	4
AGATCCTATGGACAAA	alt_5731_new	8	24	31	23	13	12	26	11	31	19
GGGTTTAATTCAGAAT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CAGTGCCGGCCTTGAC	alt_5731_new	3	15	7	8	14	4	15	4	25	7
CGATGCGGCCATGTTA	alt_5731_new	101	121	120	122	120	106	119	98	131	97
CCGAGCGTAACATCAT	alt_5731_new	12	7	14	10	9	7	20	6	7	6
TGTATACATTCGCGTA	alt_5731_new	22	37	37	29	44	26	59	30	45	29
TAGAGTAGGTGGTGCC	alt_5731_new	7	20	16	14	17	5	17	10	21	6
CGCTACTTAAAGGTGC	alt_5731_new	31	37	31	22	52	24	51	18	57	26
TTTATTCTCAATGTTC	alt_5731_new	0	1	2	0	1	4	1	1	1	0
GCGTACATTCGGCTTA	alt_5731_new	8	8	11	12	3	4	17	3	9	4
TTAATTAGTGTTCCCC	alt_5731_new	3	0	3	2	4	4	3	6	5	2
CAACGTATCACATGGT	alt_5731_new	31	36	38	38	57	31	43	32	47	34
GATCGCAAGGTAATCC	alt_5731_new	36	48	36	31	43	36	52	32	40	19
ATCGGAGATATGAGCT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CCCCGATGGTTAGCTC	alt_5731_new	0	1	0	0	1	0	1	0	1	1
TTCCCTACCGGCCTTG	alt_5731_new	9	14	2	10	10	8	8	7	11	4
ATGATTTAACTCTCAC	alt_5731_new	15	20	14	12	32	5	17	14	21	12
TCACCTTGATTTCGGG	alt_5731_new	22	59	40	30	49	33	58	27	59	22
ATGAATGAAGACATCA	alt_5731_new	19	52	18	27	36	34	55	25	68	28
GCATCCGAGAATGATG	alt_5731_new	28	35	17	27	27	22	31	14	33	13
AATGCGGGAAGCTTCC	alt_5731_new	23	48	23	26	43	23	51	27	42	25
CAGCGTAACTCTCGTG	alt_5731_new	195	276	182	176	315	167	281	159	303	155
TTTTCTACACTAGCGC	alt_5731_new	2	7	3	3	4	7	11	0	12	0
TACGTTAGCTATGTGG	alt_5731_new	14	13	11	12	7	3	9	9	21	8
CTTCACGATTGCTCAG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
ATCTATGTCCAAGCAT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GATGCCTTGTTGGAAG	alt_5731_new	28	63	38	44	49	13	48	30	58	20
GATTTCTGATGGTGCT	alt_5731_new	23	45	37	27	26	17	48	15	48	16
GGGTACAGAGGTTATA	alt_5731_new	0	10	2	5	10	5	4	4	4	4
CCGATAGGGCGCGTCG	alt_5731_new	56	99	69	50	131	59	102	61	132	45
GGAACATAAGGGCTCA	alt_5731_new	22	33	18	18	59	15	47	8	74	20
AGGTGTCTTCTGCGGA	alt_5731_new	7	19	10	6	11	5	13	6	19	5
TCACGGTCTTCTCATG	alt_5731_new	69	183	89	68	150	67	198	80	194	58
CCAAGCGATTCACCCG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GACATCGATTTGTTAG	alt_5731_new	29	51	34	39	60	32	73	25	78	23
ATTCGTTCATGATTCG	alt_5731_new	46	91	67	46	111	50	117	54	88	50
GGCTTACGTATCTAGA	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TAAGTCTAACGTCCAG	alt_5731_new	3	7	8	7	9	3	14	3	6	3
AGCTGCTGATTGTTAC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GTTAAGCTAGGACGAG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TGCGAGCCGCCCGCAA	alt_5731_new	29	59	27	39	59	31	63	28	48	35
AACACACGGACATCGT	alt_5731_new	7	34	15	10	28	8	16	11	21	11
TAGTACCCAGTTCTAC	alt_5731_new	13	23	25	12	29	10	32	13	28	11
CCTGTTTCATCTCCAG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GCGTTCGCTGATTGAC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
ACGTTTGTGGAGTATG	alt_5731_new	21	31	23	16	30	24	36	14	34	25
CCGCCGGCAGGGTCGG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GGGTAAGGGAGGTTAT	alt_5731_new	11	28	23	19	14	13	11	29	13	10
CTGTAGCGGTAACAAG	alt_5731_new	1	1	0	2	0	0	2	0	0	3
GTATTGGTATAGTATC	alt_5731_new	38	83	48	49	63	38	82	33	63	44
TAAGTTTGGTTTATCT	alt_5731_new	1	9	6	4	9	6	5	4	7	5
TAATGGACCGGTTGCA	alt_5731_new	0	4	0	0	1	0	4	0	2	0
ATTTACCGACTTACGT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TGTTTTTTATGGCTTG	alt_5731_new	20	29	24	29	48	23	32	21	32	27
GATTATGCACGTGACT	alt_5731_new	83	181	98	90	246	81	223	84	230	79
AACTCATTACGTCTCC	alt_5731_new	23	34	30	20	49	23	43	19	48	24
TGTTATGCCACCCCGC	alt_5731_new	16	12	13	9	23	11	10	7	17	8
AATCTCTTAACAATGT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GGATCTTCTAACCAGG	alt_5731_new	10	16	13	15	18	6	13	10	19	9
GCGTCCTGATATTTTG	alt_5731_new	3	11	17	8	12	10	11	11	18	6
AGTTATCGTTAAATCG	alt_5731_new	3	3	14	7	9	6	17	5	13	5
CGTGTTACCGGGATTA	alt_5731_new	6	17	8	6	10	9	15	7	16	4
TCCGTAACTGTACGTA	alt_5731_new	21	37	24	20	36	23	34	13	39	22
CCAACGGGCGTCCCTA	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CAGGAGATCTGCCTGT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CACACACGGTGCCTTT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GGGCTTGCGCCGGTTG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GTTCAGTCGCATAGGA	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CTAAAGCGTTGTACCA	alt_5731_new	0	0	0	0	0	0	0	0	0	0
GCTAGTAGCAATAGTT	alt_5731_new	27	36	32	12	43	10	42	20	31	28
AAACATTCCCCTGCTA	alt_5731_new	1	3	1	4	8	3	4	3	7	0
AAGCCCCGTGGCGTAA	alt_5731_new	16	16	15	6	15	8	21	18	10	4
TTATGGAAATACCTAG	alt_5731_new	27	40	25	20	43	12	45	19	40	22
GGGTTTGATTGGACCC	alt_5731_new	25	43	29	36	39	31	39	23	38	31
ATAATCACCTCAATCC	alt_5731_new	91	132	110	82	155	78	157	80	152	68
ATCGTGCGGTATCGTT	alt_5731_new	16	22	15	13	32	9	21	7	20	13
CTTATTTAAAACTGTA	alt_5731_new	17	15	12	13	27	13	29	15	18	15
ACTTCTAAAAACGGTA	alt_5731_new	30	20	19	13	15	13	20	18	24	13
TATTCTGGCCAGCTTA	alt_5731_new	29	30	24	30	36	15	51	20	45	24
CTCGAATTTTTACTGC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CGTTTTGTCTTGACTC	alt_5731_new	4	12	3	3	7	7	9	5	5	4
TAGATTCGATTATACC	alt_5731_new	31	53	47	26	29	31	56	37	50	31
TACTAACAGGTCATTG	alt_5731_new	25	43	28	26	56	29	46	19	49	15
AATATAAACATCTGGC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CCCATCGGTCTTTCCC	alt_5731_new	16	32	12	4	32	6	32	9	29	6
GTCACGGCCCTTACGA	alt_5731_new	13	37	27	14	25	17	25	26	39	27
CTCGAGGGATTATATT	alt_5731_new	14	16	6	19	8	8	19	13	11	12
CATAGCGTGTATTCCA	alt_5731_new	12	24	25	11	25	20	41	16	28	14
GCGACTTTCGGTCCTG	alt_5731_new	26	44	29	17	28	27	37	31	46	20
ACGAAGCTAATCCTTA	alt_5731_new	112	128	150	98	139	97	140	102	152	93
ACTCTTCTGTCTACCT	alt_5731_new	19	41	20	36	36	20	41	21	54	16
CTATCTGTCCCAACAC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TTTGTTAACAGGGGCA	alt_5731_new	5	22	19	9	15	14	20	9	20	10
CAAATCCTTCCCGCTC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CACTTGTCAGGTCCTA	alt_5731_new	18	25	19	18	24	15	34	19	28	18
AGCTTGGAGCATTTTA	alt_5731_new	117	188	130	101	180	137	195	115	209	113
ACGCTGACGTCTACAC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CGAAGTACTATGATTG	alt_5731_new	3	12	2	7	4	6	17	5	10	3
TGGCATATTTGTATAG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CATCGCTGAGAGTAGG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
AACCTAGTCGGTACCA	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TTTTGAGCTCTGTTCT	alt_5731_new	82	142	87	73	114	74	120	78	135	63
AGGGTTCGTTTCACGA	alt_5731_new	14	32	28	18	34	16	35	19	29	36
TGTGTACATTCTGGGC	alt_5731_new	24	41	23	28	41	33	47	26	42	29
TCTTAAGTTTGTCGTT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TTGATCCTTCGCCGCG	alt_5731_new	10	17	5	6	9	11	15	2	13	14
GTATAGGACTTTGAGC	alt_5731_new	19	40	22	19	32	19	30	16	38	27
TTAACCAGTAGTGGAG	alt_5731_new	9	18	25	26	41	15	25	14	17	14
TTTTCCGGGCGGCGAC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CCGACTAACAGTGAGG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
AAAGCGAATATTTCGT	alt_5731_new	22	45	43	24	54	34	51	32	66	28
AAGCCGCTTCTTTCGG	alt_5731_new	18	39	29	27	34	24	33	13	37	16
AACGCCTCATTCGGAC	alt_5731_new	12	17	14	20	21	9	29	9	15	10
TTTTTCACCTTTAATC	alt_5731_new	42	54	67	28	61	47	77	60	70	38
ACCGGTACGTAAGTAA	alt_5731_new	8	17	19	15	27	9	29	6	21	6
TTGTCCTGAGTACCTT	alt_5731_new	3	9	3	6	9	3	14	7	7	4
CTTTAGGGATGCGTAA	alt_5731_new	20	31	34	29	42	19	30	18	28	9
CACGGCAATTTCAACC	alt_5731_new	53	74	46	33	61	38	78	46	70	37
AGCCTGTTCACCGCGC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
ATGCGTGGGAGATCTT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
ATCAGGGACCTTTTTT	alt_5731_new	174	174	173	146	171	140	167	139	217	147
GGGTATTGGTAGCGGC	alt_5731_new	76	94	70	59	100	69	94	58	94	65
CAATGCACTCTGCGGG	alt_5731_new	1	11	2	1	6	6	2	3	11	3
TCTAAGACTGGGCTCG	alt_5731_new	27	79	34	36	74	44	63	31	73	22
CGTGTTCCCTCCTAAA	alt_5731_new	0	5	8	7	9	2	10	2	4	2
CGTTGGCATCGTATAT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TCGTGGGTATGCGTTT	alt_5731_new	14	10	6	13	14	10	20	12	23	12
CCAACGATCAGTCGGC	alt_5731_new	3	15	5	9	19	2	15	5	21	9
GCGACACCAATAAAAT	alt_5731_new	95	123	98	105	137	71	106	62	132	74
GTTCTGGACACTATGT	alt_5731_new	11	18	19	14	30	13	20	8	31	10
AGGTGGTACGTTCTCG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TGAACCGGGCTGCGTT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TACATGAGACATATTT	alt_5731_new	0	0	0	0	0	0	0	0	0	0
CCGTATTTTAGTTCGA	alt_5731_new	5	18	6	16	17	5	21	6	19	10
TATTAAGTTACGCGCG	alt_5731_new	8	11	4	15	9	9	20	7	13	6
TTAGTAGATCCTATGT	alt_5731_new	14	25	18	7	20	7	19	10	12	12
AGTTTTTTCGGAACTG	alt_5731_new	56	148	60	62	112	50	135	83	104	47
CGAGGTTCTGTTAACA	alt_5731_new	37	35	32	32	54	21	46	28	49	26
CCGGTGGCTGTAAATA	alt_5731_new	25	54	15	18	55	20	50	15	50	14
GCGCGGAGAGCTTGAG	alt_5731_new	0	0	0	0	0	0	0	0	0	0
TAACGGTCCTACTCTA	alt_5731_new	36	43	34	28	49	24	46	26	49	25
TCGTGGTAATTAAATC	alt_5731_new	0	0	0	0	0	0	0	0	0	0
ATACATGTTTTTCAGG	alt_5731_new	6	6	2	7	7	9	6	4	3	4
CCTGTCTGCATGTCCC	ref_3426_fdr	34	13	69	35	16	37	25	51	25	34
CTTGACTAGATCGGTG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CGCTAAGCAGCCTATC	ref_3426_fdr	19	6	27	20	5	32	4	25	5	16
GGCATCATCTCAGTCT	ref_3426_fdr	324	46	414	333	49	304	65	364	79	299
CCGATGAATCCTCCAA	ref_3426_fdr	72	34	114	120	50	73	51	105	46	67
ATCGATCTAGTGGCCT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGTCGCCACGTTT	ref_3426_fdr	239	38	322	287	60	282	49	260	43	230
CAAATACTCCTTGGAC	ref_3426_fdr	156	41	157	139	40	151	54	151	46	131
ATGAAAGTCAGGCAGT	ref_3426_fdr	75	21	78	91	26	73	9	89	35	73
CTTATATCTTATGGTC	ref_3426_fdr	295	58	362	307	52	264	60	276	52	258
TGAAGGTTTCGCATCT	ref_3426_fdr	183	41	208	160	23	125	25	185	38	143
AGCTATATTATGATCT	ref_3426_fdr	446	68	525	498	81	386	101	375	74	425
GTTTTAGGTCTTTTGT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTTGGAGTCTAG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
AGCACATTACTCCCGA	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGATTCGCTGTACTCT	ref_3426_fdr	127	22	165	150	21	114	44	122	30	115
TAGCTCCGACCTATGT	ref_3426_fdr	25	11	29	25	15	19	7	28	15	20
ATGCCCTTGAGGATTT	ref_3426_fdr	168	35	185	178	44	186	46	205	39	154
TACATGTATGGTCGGT	ref_3426_fdr	239	40	293	261	57	233	60	239	69	230
CGTTGACTGCCGTTTG	ref_3426_fdr	259	52	346	294	62	277	60	267	51	256
TTACCGCCAGGGCCGT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTTACTTTGTACT	ref_3426_fdr	178	38	218	153	34	163	47	165	43	165
CCATCTTATTTCACAG	ref_3426_fdr	203	27	267	219	48	170	45	194	37	198
TCATAGGCTGTCGCGC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TCTGATGCGGTCATAT	ref_3426_fdr	28	0	23	25	1	25	2	13	4	20
CGTTACCTCTCAATAA	ref_3426_fdr	83	34	135	117	31	81	39	79	50	70
TCACTACGCCTTTGCG	ref_3426_fdr	27	5	42	36	14	36	12	32	6	21
TCAGTGAATACGTCGT	ref_3426_fdr	100	18	131	77	10	83	33	102	20	79
CCCTGGGCCCCGGATG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCCGTTGTTTTAA	ref_3426_fdr	56	8	84	62	14	49	9	52	17	71
GACGGTCCACATGGTA	ref_3426_fdr	75	20	91	98	17	81	10	68	14	61
GGATTTCGGTCATTCT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGCAGGCTAATAC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CATCTCCTCGCCCCGG	ref_3426_fdr	174	31	217	149	41	138	35	172	35	139
CGAGCCCGACTCAGTA	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTAGCAGTGTCA	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GGCTATCCTTACAGCT	ref_3426_fdr	636	125	790	723	139	553	131	652	141	585
GTGCTTCCCTCAGTTG	ref_3426_fdr	45	14	53	42	25	46	15	53	22	39
ATTTTTAGAGATTAGC	ref_3426_fdr	45	1	56	60	3	50	6	58	9	34
CGTCGCTGTCTAATCC	ref_3426_fdr	100	11	88	104	18	84	13	81	22	80
CGACGTTGTCCGTTTA	ref_3426_fdr	267	50	285	243	46	207	59	245	64	195
AGATGCCGTATTCCAG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TTACGTCTCTCCTGCT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CAACTAGCGTTTCAAA	ref_3426_fdr	331	50	406	323	58	307	75	319	85	297
CGGCCGCTAAGTGATG	ref_3426_fdr	221	104	336	326	77	210	90	241	76	209
TGCCTTGTTTCCACGC	ref_3426_fdr	164	28	240	192	45	203	33	183	38	158
GCGGCTGGTTTATCCT	ref_3426_fdr	419	70	456	433	82	391	97	377	78	361
GCTACCGGTGGCCTGG	ref_3426_fdr	17	1	30	22	7	7	6	19	3	27
TTGTAAACAATGGCAC	ref_3426_fdr	15	1	12	10	7	13	1	5	4	15
TCGTCCGATCTGGTTA	ref_3426_fdr	535	99	621	542	73	437	86	373	101	426
TTTATGCATTGTGGGG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TGGTATTTCGATCCCA	ref_3426_fdr	64	11	74	85	12	68	10	54	13	75
GCTTTTGCGAGCTTTC	ref_3426_fdr	15	0	15	16	2	12	3	23	5	11
TATTTAGTTTTAGGAT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTCGCAGACTAGC	ref_3426_fdr	179	31	226	172	32	157	33	203	42	141
TAATAGCTTTTATGCC	ref_3426_fdr	64	10	36	49	18	39	9	37	10	40
AGGCGTTCGGCTCCGC	ref_3426_fdr	215	49	212	201	52	187	64	201	64	163
GCTGGGGTTTAACCTC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
ACGAGCTGACGCTCCC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCCTCTTCCCAAG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GTCTATCATATCCATG	ref_3426_fdr	41	4	22	25	7	8	3	12	5	19
TGCACACGCCGGTATT	ref_3426_fdr	311	55	312	306	75	259	50	339	59	236
GCCTTCGTCACGTCCT	ref_3426_fdr	190	29	215	199	31	196	37	166	37	169
CTAGGGCGACAAATCC	ref_3426_fdr	181	53	282	239	46	219	49	198	50	161
CTGGTTCCTTGCCTAT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CGAATCGGCGTTCTTC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGTTTTCTGTCCG	ref_3426_fdr	466	102	617	513	88	455	97	490	97	386
GGTTGTTGTTCGTCAG	ref_3426_fdr	87	15	87	75	21	68	15	78	18	60
GTCCTTGTTGTGACTA	ref_3426_fdr	147	15	179	155	23	154	40	125	24	120
GGCGGTGCATGTTAGC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
ACAAGACAGATTTTTG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
AACTCAAAAGACGACT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCCGCCCGACGC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
ATACGTTATTGGTTCG	ref_3426_fdr	602	124	727	676	117	496	138	622	112	553
GTTTGCATTAGCATCT	ref_3426_fdr	670	113	815	695	142	631	143	655	182	599
GGCTTAGTCCGTCCTC	ref_3426_fdr	108	22	139	107	23	77	14	96	25	71
CAGGAGTATTCGACCT	ref_3426_fdr	7	2	18	6	0	8	6	10	3	4
CCAGACGTAACAAGTT	ref_3426_fdr	0	0	0	2	1	0	0	0	1	0
TAACGGCTTTACGGTG	ref_3426_fdr	100	14	120	105	12	98	18	95	18	62
TTAAACTGCTTGGGTT	ref_3426_fdr	395	87	486	447	71	362	87	404	89	360
AGAGTTTAGCGCCTAG	ref_3426_fdr	51	16	75	41	13	43	6	50	11	63
TAATTTGTCCGCGATG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTTCACTATACG	ref_3426_fdr	21	4	16	19	5	14	6	12	3	11
CTAGGGAGTCAGATGG	ref_3426_fdr	212	58	249	232	46	192	57	195	57	222
TCAGTCTAGAAATTGT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CCCCTTGAAGTGGTAA	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGGGTCTGCATCC	ref_3426_fdr	6	1	3	0	0	3	1	1	0	0
TGCCGCACTCCTTCCT	ref_3426_fdr	53	10	62	58	15	36	25	51	13	35
CACGTATCGTGGAGTA	ref_3426_fdr	222	38	287	268	49	187	40	218	40	181
ATATGTGTTTATGTCG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GCTAACAGGGGTCGGG	ref_3426_fdr	134	21	169	161	27	140	21	144	30	93
GGTGCTTGCCCCCTGG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCTGGAGTGATCA	ref_3426_fdr	730	155	980	778	128	686	154	749	129	663
TACAGAATCGCTGCTG	ref_3426_fdr	98	25	150	115	10	117	17	57	18	108
CGACTAACATGGGTAC	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CCTCACTACGGTTGCG	ref_3426_fdr	180	54	245	205	52	184	59	206	49	136
ACGTACCCCCGTCTTG	ref_3426_fdr	80	67	144	134	97	84	111	113	99	83
CGTACTTCTGTTCTTA	ref_3426_fdr	114	18	115	111	27	115	23	92	32	98
CCCCCTTGAACCCTGA	ref_3426_fdr	56	12	55	62	7	38	6	56	5	40
ACTGACGTTGAGCGTT	ref_3426_fdr	535	113	669	617	111	473	113	548	115	428
TCCGCACTCATCAGCT	ref_3426_fdr	491	109	614	569	100	479	117	465	110	438
GAATTCTTAGGCGCTA	ref_3426_fdr	165	33	210	210	37	180	24	191	39	157
AGGCGCTCTTTGCGTC	ref_3426_fdr	84	10	106	91	21	89	26	74	15	62
GTTACTTGGACCGCTG	ref_3426_fdr	17	3	11	23	5	19	2	8	11	23
CAGTGAACTTGCGGTG	ref_3426_fdr	114	23	140	138	32	99	22	113	15	84
AGGCCGCCGTCCTATT	ref_3426_fdr	27	11	33	36	10	33	11	37	17	30
TAGTTGCCCTTCTGTG	ref_3426_fdr	183	40	289	340	61	255	53	263	54	214
TGGGTACGGTGGCGGA	ref_3426_fdr	109	26	138	135	24	114	22	122	19	84
TTTAAAGTTAGCTTTA	ref_3426_fdr	204	47	273	231	51	194	48	175	57	188
GCAAGGTGTTGGAAGC	ref_3426_fdr	406	74	535	445	89	394	91	387	108	375
ACCCGTGCATTAGGTC	ref_3426_fdr	258	66	362	285	49	260	51	263	40	224
TCTGGGGCGACCCGTT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGATTACTATAG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TAGTTTCGCTAAACTT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CCACAAGTGGTCTATA	ref_3426_fdr	209	70	276	279	65	219	55	210	66	195
GCAACTCCCCCGCCAT	ref_3426_fdr	192	52	307	224	64	203	76	210	64	218
ATTCACGTTTTTAAGT	ref_3426_fdr	77	6	92	76	7	85	7	65	8	76
TCCACCTATTGTTCAA	ref_3426_fdr	4	0	3	10	1	8	5	8	3	8
CACGTATTGTGTGTTA	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
AATCGGAGCTCCAGTT	ref_3426_fdr	189	38	208	185	38	199	40	173	44	165
CCCGACCACTGCTTTC	ref_3426_fdr	22	10	23	22	3	15	7	20	12	19
ACTGGCCGATCAAGGT	ref_3426_fdr	373	84	479	437	73	411	68	393	62	347
ATAGCTTTAAAGAATA	ref_3426_fdr	184	62	250	187	46	203	48	190	58	191
TGATCGCTAAGAGGGG	ref_3426_fdr	153	29	193	186	23	161	23	160	28	113
TCGTCCGGCCACGACG	ref_3426_fdr	43	12	35	38	12	29	17	29	7	46
TTACTACTGTGCAGTG	ref_3426_fdr	295	77	310	319	63	260	59	294	47	249
TATGAATCAGGATGTT	ref_3426_fdr	209	51	269	262	39	207	47	226	40	180
TCGGGAGGGATTTTGT	ref_3426_fdr	86	13	130	130	23	95	34	89	21	71
CAGTGTTTAGTAGACC	ref_3426_fdr	152	40	237	255	43	191	45	205	37	151
GCCCAGAGACTCTTGT	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGCCTGGTTCCCA	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
CTCATATTAGTCGTTT	ref_3426_fdr	14	20	17	9	21	10	12	10	19	17
GTGCGTTCTAGTCCGG	ref_3426_fdr	57	14	52	62	13	63	11	31	19	49
TGCCGTATTTTCGCAG	ref_3426_fdr	0	0	0	0	0	0	0	0	0	0
TACTTAAAGTGACATT	ref_3426_fdr	371	83	470	450	77	353	70	410	80	325
CGAGAAGCCTTGGTCC	ref_3426_fdr	453	88	567	566	93	462	104	457	85	444
TGTCTCGTGCAAGTCA	alt_4684_reverse	74	55	74	53	30	78	52	80	48	45
GGGCCTTTGTTCAACC	alt_4684_reverse	32	28	54	46	36	51	27	25	29	35
CTATCTGTTTGTAGTC	alt_4684_reverse	20	13	16	23	14	16	8	7	16	14
GGTTTCTTAATTTTGG	alt_4684_reverse	17	7	15	14	9	18	13	11	10	4
AATCGATTTTCATAGA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TAGTATCGTCCGCCTT	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GGCGAGCCTGTAATGC	alt_4684_reverse	21	21	42	26	28	32	26	25	22	29
CGTTCATACTGGTGGT	ref_4684_reverse	134	116	146	132	129	163	137	133	131	129
ACGTAACGTCCTCCGA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
CGAACCTCATACTAAA	alt_4684_reverse	45	52	63	44	57	45	50	38	63	36
TCTGTACCTATACCTA	alt_4684_reverse	32	22	30	17	22	33	17	25	19	24
TGCGCGGGCCTGAGTC	alt_4684_reverse	17	14	28	16	14	19	28	26	14	16
GAGGCTATGGCATTCA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGGGTTCTGGTGG	ref_4684_reverse	2	0	9	4	2	3	4	2	2	8
CTTGTCAATTCCGGCC	alt_4684_reverse	51	39	79	55	41	40	43	53	52	54
CAGTATTAAGATTGGT	alt_4684_reverse	21	16	23	14	19	19	24	16	22	22
CAGGGCAGCAATTCAG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGATTAAGTATCCAAC	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
ACAAAACTATCTTGGG	alt_4684_reverse	46	33	63	71	38	64	47	62	52	61
TCATATTGGGTCCATC	alt_4684_reverse	5	4	5	4	2	4	4	3	1	5
TCGAGGGTATTCACTT	alt_4684_reverse	69	51	83	50	52	78	46	71	53	52
TTTCTGCGTTTTTCCC	alt_4684_reverse	49	33	47	45	27	46	21	35	27	44
CCATGTAACTTTCCTA	alt_4684_reverse	22	14	19	15	13	17	9	14	9	11
TCTTACTCAGTGTGTA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GTATTAAAAAGTGATA	ref_4684_reverse	18	12	29	24	7	23	15	16	17	12
CCGTCTGTACGTGGTT	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCTGCCCATGGAC	alt_4684_reverse	241	145	257	184	167	198	150	229	189	209
TGACTCATATGGTCAT	alt_4684_reverse	66	45	64	75	53	89	45	74	47	69
GATAGAGTATGAAAGC	alt_4684_reverse	39	32	47	40	25	46	34	28	31	33
CTCTCCTACAATATAC	alt_4684_reverse	9	9	5	20	19	6	12	10	5	6
CCAACCACGTCTATGA	alt_4684_reverse	2	4	6	5	7	5	7	5	10	4
CGATTGATCTTTTAAG	alt_4684_reverse	29	32	33	29	27	27	25	25	25	28
TTTTGTAGTCCTCGTA	alt_4684_reverse	45	29	44	48	32	21	32	38	35	46
ATCAAGCCTTAGCAGT	alt_4684_reverse	175	120	225	157	122	197	153	157	147	153
TACCTATTTCGTGCTC	alt_4684_reverse	61	50	132	103	53	90	62	74	64	74
CGAGTCACTGGCTGGG	alt_4684_reverse	17	9	14	30	18	20	17	16	13	15
TGAATCGCTTACGGCA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TGGTATATCTAGAACA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCGACCACATGAC	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TCCATCAATTGGCGTT	alt_4684_reverse	50	35	63	39	48	44	36	55	57	30
CGCGAGAGTTATCTGT	alt_4684_reverse	87	54	110	103	55	101	51	88	57	80
GAACGTTGGCGCCTAC	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGACGATTGACTT	alt_4684_reverse	14	8	20	17	22	20	19	11	16	17
AACTTACATTTCCGAT	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TAATATTGTCGGGTTT	alt_4684_reverse	146	80	143	138	78	128	98	100	91	131
TTGCGGTCAAGACCGT	alt_4684_reverse	386	258	431	323	231	354	284	275	264	323
GGGTCTTACGTTCGAA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTTCCTGAGTACA	alt_4684_reverse	131	140	160	156	111	134	123	135	137	147
TGTTGCGACACACGCT	alt_4684_reverse	13	12	21	13	12	15	14	19	11	14
TATCTTGAATATCTGG	alt_4684_reverse	20	21	40	24	11	18	24	31	8	23
TGAAGTCCTTTTTTGA	alt_4684_reverse	125	91	172	146	112	103	122	155	110	128
TCTTCAGAGGGCGCGG	alt_4684_reverse	61	43	51	56	48	48	50	61	51	57
ACGTCGTATCACCGGG	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCCCTTGACAGTG	alt_4684_reverse	9	19	13	1	12	15	16	15	11	11
TAGTAAAGTTGTAGAA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGAGAGCTATCTA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTAATAGGTGATG	alt_4684_reverse	10	6	3	2	5	10	5	4	9	3
CTGACACATTTATATG	alt_4684_reverse	21	17	39	15	27	27	23	35	19	26
CTTCTCCCATATATGA	alt_4684_reverse	35	14	23	15	21	22	20	20	32	12
CCCCTTTCAATCAATA	alt_4684_reverse	14	14	11	14	8	7	17	5	11	4
TTACGCTGCGTAATGC	alt_4684_reverse	181	143	233	168	136	159	148	183	136	159
TGTGGGAATTTTCAGC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TCATAGAGACTGTAGA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TGATACTCATGGCAGG	alt_4684_reverse	55	38	58	49	53	53	41	65	49	50
TTTGGCTTTCTCGGCT	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TAATTCCTCCGGTCTA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GCTATTATCCTCGAGC	ref_4684_reverse	131	126	158	164	113	155	125	129	130	181
CGTGTATTGCTCCGGA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTTAGTACGGTCG	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TCATGTTCAATTGCTC	alt_4684_reverse	27	24	37	12	29	16	25	19	34	31
AATCTTTACTACTCGC	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTACGCGAGAGCT	alt_4684_reverse	162	98	173	164	106	140	105	160	116	136
GCTCCGTCGGTACCGT	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTCGTCTATGTTA	alt_4684_reverse	30	36	39	39	47	46	24	26	32	33
CGCATGCTTCCATGTA	alt_4684_reverse	12	11	22	13	14	14	8	8	9	9
GTTTTAGTACTGTCTT	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GACGTAATGGAAATTT	alt_4684_reverse	4	3	16	0	1	5	7	4	2	7
TCGTGCTCTCCCCTTG	alt_4684_reverse	93	98	104	106	93	98	107	83	135	85
CGTCCGTTAGCCTGGC	alt_4684_reverse	80	58	86	76	51	77	67	78	68	67
CGCGGCCTCCATAGTT	alt_4684_reverse	19	18	23	8	25	14	14	11	16	12
TCTACTAATATGTGAC	alt_4684_reverse	25	12	34	16	16	18	9	20	14	24
TGGGCTCTCGTTCTAG	alt_4684_reverse	33	24	51	38	42	37	22	29	18	32
AATTTTCAGTGTGTAA	alt_4684_reverse	50	29	52	36	61	40	47	31	42	38
TAGTATTTTATCCCGC	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTCTGACCAGGAC	alt_4684_reverse	39	44	38	34	46	33	33	23	45	35
AACGTCTTTGGCTTGG	alt_4684_reverse	39	31	50	25	33	36	37	43	41	41
AATTTGAGCGTCGAGT	alt_4684_reverse	7	2	18	14	9	9	17	5	9	12
TGTTGGCTGTTTCCCC	alt_4684_reverse	55	51	69	62	43	50	49	54	39	58
GTGGACAACCGATAAA	alt_4684_reverse	53	39	77	49	45	45	49	49	47	58
ACTGGAAATGCCGGCT	alt_4684_reverse	10	18	22	10	9	15	17	12	15	16
AAGCCTGTAGATATTT	alt_4684_reverse	60	54	109	55	51	67	78	79	57	53
AGACTGTTAGCTATTA	alt_4684_reverse	86	65	79	62	59	67	66	65	73	56
CTGCAGCTGGAGTTTA	alt_4684_reverse	17	16	22	14	12	9	18	13	14	11
GCAGAAGTATTCTAGA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
AAAAAATAATTAAGCA	ref_4684_reverse	51	38	62	51	31	63	40	54	39	55
CCTCGCTCGCCAGGTC	alt_4684_reverse	29	30	29	26	42	26	33	22	27	26
TAGGTCGGCACGATTT	alt_4684_reverse	37	23	41	35	30	46	40	40	34	26
TATCAGAGCTCGAAGG	alt_4684_reverse	66	49	63	52	62	68	56	39	63	51
CCGCCTGGAGTCGGGG	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTATCGGTTGGTG	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGACTTAAAGTTG	alt_4684_reverse	88	56	97	94	91	84	77	66	69	63
TTCTGTGGTGTCCCCA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
CATTATCCTTGGCCAA	alt_4684_reverse	19	29	53	35	31	48	25	31	31	40
TTACGCTTATGCGTCA	alt_4684_reverse	18	13	19	13	18	21	13	10	9	20
GGCAAGCTAGTAGTAT	alt_4684_reverse	3	4	1	2	0	2	1	5	6	5
TTGTAGCCAAATTCTC	alt_4684_reverse	32	24	38	26	33	44	38	36	23	27
CACTGTAAGTTGGGGG	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCGTTGCTTGTCT	alt_4684_reverse	5	2	6	2	4	5	4	8	8	4
CACCTGAAGAAATGCT	alt_4684_reverse	75	33	82	70	48	74	48	67	49	64
TTGTGGATTGATTACG	alt_4684_reverse	55	71	99	84	75	82	85	62	74	62
GGTGTTAGTACGTTCG	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTCACATACTTTG	alt_4684_reverse	6	2	9	5	8	7	4	7	7	3
TTATGTAGGGCTTTGC	alt_4684_reverse	36	26	43	28	24	31	30	20	24	25
GCCCGTCTGTTGCGTG	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCTGTCCGTTTAA	alt_4684_reverse	42	51	43	47	34	48	56	45	47	35
CACCTACGAGCAGCAC	alt_4684_reverse	31	27	50	34	39	36	30	41	33	33
TTCACTCTTCACGCTA	alt_4684_reverse	0	0	0	0	0	0	0	0	0	0
TAAATCTCATACGTCA	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
GTTGCGCTTCAGTGCT	alt_1139_missing	35	74	64	49	71	47	80	39	58	34
TATACGTCAAGTACAA	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
ACAACAGCATCGTCTA	alt_1139_missing	7	24	6	11	17	6	8	7	19	4
TATTACTTGGAGTTCC	alt_1139_missing	7	4	9	9	5	1	9	1	3	3
TCACGTATAACATCTC	alt_1139_missing	24	33	26	27	45	26	55	35	41	19
CATCTCGGAGGTATAC	alt_1139_missing	19	48	22	10	26	21	29	8	32	18
CCGCATAGCCGTTTGT	alt_1139_missing	2	2	2	1	3	1	5	0	2	0
CCTTGATCGCTACTTG	alt_1139_missing	8	19	10	10	29	12	25	10	27	11
GGCACCAGCCACAGGC	alt_1139_missing	2	4	8	3	1	5	4	4	2	5
AAGTATAGTTCTCTGC	alt_1139_missing	14	25	27	26	23	25	32	10	40	20
GATCGCCTTTGACATC	alt_1139_missing	52	57	55	34	43	34	61	25	75	37
CTTTTGTCTACTTCGA	alt_1139_missing	8	16	17	7	17	9	15	12	21	8
CTTAGGACCCTAATTT	alt_1139_missing	50	68	60	63	73	68	84	50	70	38
CCGTGGGGTCTCTAGG	alt_1139_missing	9	14	12	12	24	10	6	19	20	9
GGCTCTGACCTATTTT	alt_1139_missing	54	75	71	54	64	63	72	42	69	51
TATCACGCTTATCCTA	alt_1139_missing	22	40	46	26	42	33	43	34	41	25
GATTCCTCTTAGCCCG	alt_1139_missing	0	8	8	6	5	9	5	5	8	8
GAACTATGGTTGATCT	alt_1139_missing	16	14	21	21	20	8	14	16	24	11
GTCTTCGAATGTGCTA	alt_1139_missing	8	5	10	17	13	4	13	12	5	19
GGGCGATTGTAGTAGT	alt_1139_missing	21	42	25	41	34	32	29	17	31	16
CACGAGCATCCCGAGT	alt_1139_missing	14	12	7	8	11	7	24	9	16	8
TTTGCCGTTCCCGCCG	alt_1139_missing	15	12	13	9	26	12	11	6	19	8
CTTGCTCCTGTAACCA	alt_1139_missing	14	31	19	14	36	17	36	17	35	22
CTTGCGCTCTGGTCGT	alt_1139_missing	16	29	25	12	29	13	22	10	22	20
CTAATGTCGCGTTGCA	alt_1139_missing	14	18	10	7	11	11	16	10	21	9
CGTCTCTGGAGTATAT	alt_1139_missing	22	26	24	17	27	19	31	24	29	24
ATTCCTTCGCCAGGAG	alt_1139_missing	54	57	66	64	51	47	85	57	64	55
TGCCACGTCTTAGTTT	alt_1139_missing	4	2	1	1	5	2	5	1	3	4
GCATGCCTCCCCCCTG	alt_1139_missing	0	2	1	3	3	2	3	0	4	4
CGTCCTTCGTTTGTTC	alt_1139_missing	10	13	18	9	10	7	10	4	22	9
AGGAGTGCGCTCGATC	alt_1139_missing	50	103	82	82	85	70	89	70	91	57
TAGTTGCTACGCCATA	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
GTGGATACCGGATGTC	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
AAAAGAGTGTGTTAAC	alt_1139_missing	17	34	17	15	27	23	32	10	38	11
TGCCATTTTCTATGGC	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
GGTCGGCAATTATTAG	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
TGTGCAACCGAGACGA	alt_1139_missing	21	28	43	28	34	19	21	24	32	19
CATCTGCCTTATGAGT	alt_1139_missing	3	6	5	5	6	2	8	1	7	3
GGATTCATGGTTTGGG	alt_1139_missing	6	7	7	5	9	4	9	3	13	6
GTGTGTATATGGGTGG	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTATGGTAGTGC	alt_1139_missing	27	63	30	32	63	28	62	24	75	23
AAACTCTATCTTCTAT	alt_1139_missing	45	35	41	33	29	27	31	26	32	25
ATCGCCCGTGAACAAG	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
CCCATTGGTGTCTCGG	alt_1139_missing	13	12	15	11	21	18	14	13	24	13
TATCCTAGGTCGATGC	alt_1139_missing	17	20	16	12	13	9	15	16	22	12
GGCTTGGGAAAAAGAG	alt_1139_missing	21	32	35	24	22	28	34	18	28	22
TCTCCACCCTTTTGCG	alt_1139_missing	2	8	6	7	8	3	10	5	13	5
GGCGATACTTTTTAAC	alt_1139_missing	46	75	67	56	89	45	84	45	69	33
TTCAAGCATCCCACCA	alt_1139_missing	0	0	0	0	0	0	0	0	0	0
CTCGTGTAGATAACGT	alt_1139_missing	44	63	38	40	57	43	67	34	60	25
CCTCAGATGCATTCGT	alt_1139_missing	3	7	6	8	5	8	12	4	16	10
AGCACTGGCACTGCTC	alt_1139_missing	40	60	35	35	50	42	50	28	51	31
AATAGCGCAGCTTACA	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTGCCAATAGTTA	ref_5221_reverse	19	22	18	20	21	24	31	24	22	25
AGCCATTCTTCCTTGG	ref_5221_reverse	20	24	25	15	13	9	17	23	9	13
AATGATACAAGATTTT	ref_5221_reverse	20	28	29	17	14	28	15	23	17	13
TGCTATCCCCTGTTAG	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
CCCCAGCATCCTTGTT	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
AGATTCATAAATCTGT	ref_5221_reverse	19	9	17	23	16	10	11	10	10	12
TTTCGTCATCAGAGGT	ref_5221_reverse	52	41	48	48	39	35	29	31	29	27
TCGAGGCAGGGGGGCC	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTTCGGATTGGC	ref_5221_reverse	17	14	16	15	14	17	14	12	13	14
ATGTGGTTAGAGCTTC	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
GATCTGGTCAGGCCAG	ref_5221_reverse	498	341	614	463	345	448	372	432	386	467
CTGGGCTGAGCCTATT	ref_5221_reverse	13	14	26	29	25	24	29	22	16	26
CGCCCCTGTTGTTAAC	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTAGGTAGCGTAG	ref_5221_reverse	188	152	224	222	166	212	182	183	172	180
GCATACACGCTTGTCC	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
GTATTCTGTCCTCGTG	ref_5221_reverse	290	235	344	307	224	307	237	259	271	235
GGTAGGTGGTGTTCTT	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
GAATGCGTTCCTGTGC	ref_5221_reverse	43	33	57	43	36	46	35	43	43	55
GTTCCTGAGCTCCATA	ref_5221_reverse	39	29	61	41	22	26	30	39	31	40
GCCACTACATACGGGT	ref_5221_reverse	19	19	23	25	25	16	19	20	21	23
TTGAGACCCAGCTTAG	ref_5221_reverse	26	24	41	31	23	41	36	39	39	30
CCACGTTCCTATCCGT	ref_5221_reverse	3	6	4	2	17	3	21	3	21	3
GCTTCATGGCGGCCTC	ref_5221_reverse	2	1	0	4	0	0	0	1	3	1
ATGATCAGTAGAAAGC	ref_5221_reverse	99	64	118	76	59	98	57	77	72	77
GAGCAGTTTTAAGAAT	ref_5221_reverse	232	187	308	241	223	250	195	218	178	212
CTACTTTCCCAGGTCC	ref_5221_reverse	6	4	10	9	13	12	6	5	8	14
GCAGCAAGTGGGGGTC	ref_5221_reverse	13	19	26	8	15	17	17	22	9	10
TCGAGTTTTGCCGCTT	ref_5221_reverse	9	9	20	8	10	12	11	7	13	12
GTCCTGTTTTAATCTA	ref_5221_reverse	76	55	94	75	73	87	58	78	66	64
AAACCAAAAGAATTTA	ref_5221_reverse	94	77	126	98	87	106	96	92	97	88
GTGCCATGTAGGGGGT	ref_5221_reverse	19	6	15	14	6	12	12	10	35	11
TTCGACAAGATATTGC	ref_5221_reverse	43	23	58	50	39	38	30	40	48	37
TCACCTTCCGAGACAT	ref_5221_reverse	13	10	12	16	4	12	8	15	12	11
ATTGCGAATGGGAGGT	ref_5221_reverse	5	7	5	10	6	5	5	1	2	7
GGCTACTCACTGCTGG	ref_5221_reverse	3	2	1	3	0	6	5	3	6	2
ATGGCATCGAGGTTCG	ref_5221_reverse	57	23	61	47	28	44	24	53	43	30
ATCAGTCCGTTGAATA	ref_5221_reverse	112	97	144	124	123	110	81	120	93	103
GTGGTTAACAGGAATC	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTCCCTTGTAACG	ref_5221_reverse	17	18	16	12	13	18	16	7	5	23
TACCTCAGGATTCGGT	ref_5221_reverse	28	18	38	30	24	33	31	43	19	36
ATCATGCTGCTTTACG	ref_5221_reverse	48	37	72	68	48	61	40	67	41	51
CTTGGATAGGTAATTC	ref_5221_reverse	24	40	35	34	34	27	27	33	27	17
ATAATAGTTGGTCTAT	ref_5221_reverse	11	22	28	12	23	16	17	11	22	11
GGGAAACAAGGGTATA	ref_5221_reverse	28	11	35	16	12	17	12	20	21	13
GTCGGTGATACGAATT	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
ATCAGGTTTCTTGCTA	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
GCCAAGGAGTGATTAC	ref_5221_reverse	18	19	30	20	16	22	31	28	19	25
GTTACGAGTGTTAGAA	ref_5221_reverse	19	20	26	21	19	20	18	28	14	15
ATTTATTTTTTTTGCT	ref_5221_reverse	72	29	101	67	43	79	42	80	50	73
TTATTTTCGTTGTCCC	ref_5221_reverse	85	59	103	85	69	105	74	96	71	70
TAGGTCAAAAAATTTT	ref_5221_reverse	152	92	150	143	109	127	95	145	120	114
AATGCGGATGTTGCGA	ref_5221_reverse	2	4	8	5	2	3	4	3	4	1
TGCATTTTGATATCCA	ref_5221_reverse	127	102	160	166	73	142	100	111	108	129
GTGCGTCCTTTTTGGG	alt_5221_reverse	54	49	82	55	55	64	47	46	35	64
GAAGCCTACCTGCTCG	ref_5221_reverse	19	13	22	28	17	22	24	15	23	16
GTTAGGAAAGTTATTA	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
CCCAAAAACAGCCGGA	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
ATTTATTTTTTTGCTT	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGTCTGATCTGTG	ref_5221_reverse	68	60	98	110	80	62	60	75	83	81
CCAGCGTCTTCGGCTC	ref_5221_reverse	62	80	97	76	64	57	53	87	74	77
GTAGATCGAGCACGGG	ref_5221_reverse	88	62	115	83	62	77	73	84	52	76
ATGGTATCTATAATCA	ref_5221_reverse	5	3	3	5	3	3	1	7	6	1
GCCATCAGCTATGTCA	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCAGCTCGTAATC	ref_5221_reverse	93	69	112	96	72	75	58	63	60	99
CAAGGTAGGATTTCTT	ref_5221_reverse	55	35	61	56	41	48	44	48	42	32
GTCGGCGTAAAAGATT	ref_5221_reverse	2	1	3	9	7	2	2	1	1	6
TTTGCTGCCTGGGATT	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
TTAATACGGGAATGTG	ref_5221_reverse	22	23	35	40	22	26	17	22	20	22
CACAAGACGAAACGAC	ref_5221_reverse	13	27	16	9	31	7	17	8	28	14
TATTTTACATCATTGG	ref_5221_reverse	71	39	63	63	59	53	52	54	47	52
GGAATTCATTAATGTG	ref_5221_reverse	22	25	31	34	18	30	14	18	16	24
GCTAATGCTGCGTTCC	ref_5221_reverse	376	257	474	381	273	348	308	357	334	298
TGGCCGGAAAGCCGTG	ref_5221_reverse	83	52	86	67	52	73	57	66	43	63
CGGCACATCGGGGTTC	ref_5221_reverse	19	14	28	24	6	27	9	26	11	27
CCTGTCTTCCATGTCG	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
GCGATCCTGCCAAGAT	ref_5221_reverse	207	159	297	237	146	230	179	208	160	208
CGTGGCGGTTTCGGAT	ref_5221_reverse	18	9	21	24	5	9	13	10	14	13
TCCATATATCATCACA	ref_5221_reverse	7	4	11	12	3	7	11	8	5	9
CGATATGCCTTATGGC	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
CAACAGTACTTCTCGA	ref_5221_reverse	49	51	69	63	41	90	65	66	54	62
TGCCTCCTATCGGTTC	ref_5221_reverse	31	26	37	32	13	25	24	34	22	24
TTAGCGCCATTGAAGC	ref_5221_reverse	10	8	25	12	4	7	21	7	10	11
TGTTGGCCGTACTTTG	ref_5221_reverse	7	6	7	9	5	7	4	5	10	7
ATGACGTATTAATTTA	ref_5221_reverse	37	33	53	50	37	41	39	49	39	40
TTCAAAACATTTTGCT	ref_5221_reverse	10	19	16	24	11	20	14	32	19	25
GAGTTCTCCTTGGTAT	ref_5221_reverse	43	31	44	53	40	43	38	27	48	40
TAGCGGATGCACTGCT	ref_5221_reverse	64	51	101	77	64	75	63	83	68	84
GCGGACTATTTGTTTG	ref_5221_reverse	4	4	3	3	1	0	0	3	6	4
GGAAATGTCCAGATGA	ref_5221_reverse	42	31	30	45	24	37	20	26	33	31
GTATCAGTTAAGACTT	ref_5221_reverse	48	57	48	47	44	50	58	40	43	51
ATATCTCTGTATCACT	ref_5221_reverse	18	14	24	15	6	14	9	15	12	16
CCGCCCCGCCACTCTA	ref_5221_reverse	22	17	27	23	18	18	11	19	20	26
AACGCTAACTCTTCAC	ref_5221_reverse	7	5	11	8	6	10	8	9	6	7
CCCTTAAACAAATAGA	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCATACCTTCTAG	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
GGGTATACGTAGTACG	ref_5221_reverse	31	17	21	27	12	15	11	23	24	21
ATCGTTGACAAATTGA	ref_5221_reverse	111	72	103	93	80	90	71	78	75	76
CATTTGTGTATCCATT	ref_5221_reverse	39	29	58	31	27	46	54	45	33	31
ACCTCGTTTAGTTTGC	ref_5221_reverse	0	0	0	0	0	0	0	0	0	0
ATGTATCTATGCGCTT	ref_5221_reverse	20	24	34	37	19	19	20	30	31	19
TTGCACTTTTCCCACC	ref_5221_reverse	36	23	41	33	30	32	28	34	36	43
TGCGGCGGGTATACGT	ref_5221_reverse	63	55	71	64	60	64	62	60	56	58
TATTAGCATTTTTTAA	ref_5403_upstream	29	19	39	43	20	51	21	36	19	35
GCCCTCGCGGTGTTCA	ref_5403_upstream	34	23	28	39	13	38	14	33	18	39
CAGTCCATCTCCATAC	ref_5403_upstream	19	9	24	15	15	15	8	16	13	16
TAGTGACATTGATAAG	ref_5403_upstream	14	10	30	28	18	36	24	25	21	19
GGGCCTTTGACCCCAC	ref_5403_upstream	5	4	5	3	5	4	10	2	6	3
GGCTTCAACTAATTTA	ref_5403_upstream	36	26	43	34	22	29	20	40	21	35
CACGAGTTGTCAGTTA	ref_5403_upstream	49	32	55	64	33	52	25	69	34	58
CTCTGTGGCCACCATT	ref_5403_upstream	39	23	56	49	21	48	19	40	22	34
TTTACGATTGATGTCT	ref_5403_upstream	37	24	43	40	22	29	32	35	21	33
GACAGTGTTTAGGCTT	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
TTCACGTCTGGGATAC	ref_5403_upstream	48	35	52	67	27	56	36	51	40	42
GGGTATGTGATAGCCA	ref_5403_upstream	40	20	44	49	30	58	38	52	46	39
CCTTCATTGTTGCGTG	ref_5403_upstream	9	5	12	12	4	4	5	8	6	5
GATTTGTCGGGACAGA	ref_5403_upstream	157	82	218	190	93	163	102	164	93	179
CCGATTCGCGTACGTT	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
ATTGAAGAATATTACT	ref_5403_upstream	15	8	18	20	17	16	14	17	10	18
TTGTCGCGGCCGTGTG	ref_5403_upstream	80	45	99	76	50	82	59	70	68	61
TTAACCGTCCGCATGA	ref_5403_upstream	108	49	93	94	61	83	43	79	53	63
GAGGAGAGGATTACGC	ref_5403_upstream	193	88	212	173	85	167	95	180	101	152
CAAAGTTGAATAATGG	ref_5403_upstream	108	54	163	119	52	124	61	118	44	100
TCTTATCATACTGACG	ref_5403_upstream	7	11	6	5	8	3	13	3	8	4
GCTCCATTATATCTTA	ref_5403_upstream	9	3	15	11	4	8	3	17	2	8
CTCCATTCTCCAGTGG	ref_5403_upstream	9	18	10	26	17	15	13	22	15	19
GTGTAACCCGAGGCCT	ref_5403_upstream	34	20	45	34	22	28	32	24	18	27
AACGTGTTTTTACCAA	ref_5403_upstream	3	2	0	0	2	2	0	2	2	2
ATTCTGCCAGGGGACT	ref_5403_upstream	46	25	46	37	19	44	12	45	22	33
GGCCCTGTATTCCGTC	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCATAAGGAGAAA	ref_5403_upstream	75	36	75	66	28	69	45	60	51	53
TATACCCCTTTGCTCT	ref_5403_upstream	23	32	43	34	17	18	29	34	31	32
TCCGCCTTGGAGCCAG	ref_5403_upstream	417	263	519	488	242	426	269	402	287	391
CTGTTCGACTTGTCAC	alt_5403_upstream	40	38	51	52	36	36	37	37	22	66
CTGATGCTTCGTATGC	ref_5403_upstream	106	52	90	91	59	72	59	87	78	77
ACTTTAAGGGCTCTGC	ref_5403_upstream	21	5	13	21	6	13	10	16	3	16
TGCTTAACGCTTTAAA	ref_5403_upstream	80	61	106	109	66	86	69	95	54	80
GACGAGCTGATTATAA	ref_5403_upstream	102	43	103	82	51	73	50	80	54	73
CAATGGTTCGGAGGTA	ref_5403_upstream	184	104	203	163	97	163	95	159	111	139
TTCGGAAGAACTCACA	ref_5403_upstream	26	23	37	45	24	15	19	30	23	20
GCCCGGCTACCCAATG	ref_5403_upstream	73	55	118	92	73	74	71	62	71	64
CAGCGCCGTTATGTGT	ref_5403_upstream	217	134	256	226	145	193	182	224	148	185
TAGAGTCTGGCTGTGG	ref_5403_upstream	0	1	1	2	1	0	0	1	0	3
CGTCGAACCAATGAGA	ref_5403_upstream	1	1	3	3	5	1	5	1	2	2
TCGGACGATTTGTTTA	ref_5403_upstream	19	13	23	21	15	15	15	19	13	16
CAGTTCAAGGGAGTCC	ref_5403_upstream	37	18	48	39	24	27	22	40	22	28
GACAAAATTTTCTGAC	ref_5403_upstream	20	13	26	18	9	22	14	17	8	14
CCGGGTCGCCTCGCAA	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
GGCAGTGACGATTGGG	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
AGACAGGTTTATAGGC	ref_5403_upstream	12	9	23	14	9	18	11	18	10	21
CTTATACTGATACCCT	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGTCCAAATTGTG	ref_5403_upstream	33	23	32	31	20	26	14	30	41	28
GTTTTCGGTCTTTGCA	ref_5403_upstream	33	28	49	45	29	35	16	30	21	33
TCAAGAGAAAAAGCGT	ref_5403_upstream	17	10	27	48	11	38	18	24	12	26
TCCGTCATGTGTCTTG	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTAGTTCTGCCTG	ref_5403_upstream	28	8	22	22	12	19	11	16	7	20
GGTGGTCTAGGGCTCA	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTCATAGCACAC	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
GCGGTAATATTAGTTA	ref_5403_upstream	52	28	59	58	20	29	30	53	31	49
GGTGAACTTAGGTGCC	ref_5403_upstream	47	40	77	49	52	57	31	59	30	40
GGGTTCCATATTATCT	ref_5403_upstream	15	8	18	16	13	21	13	11	12	11
CCACTATTGCCGTCAA	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
GCAGGATTATGTTCCG	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTATCGTCAACGT	ref_5403_upstream	69	52	78	82	48	69	64	81	42	61
TAAGTACGCTGATAAC	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
TGATTCGTCCACTCAA	ref_5403_upstream	146	102	150	132	102	133	105	97	100	116
TTCAAACAGGTTCGTC	ref_5403_upstream	25	15	45	44	19	35	16	28	13	32
CATCCCTCATTCGATC	ref_5403_upstream	20	50	26	12	47	19	38	25	47	25
TGGTATTATGACCTCT	ref_5403_upstream	44	28	61	59	27	45	22	49	18	36
ATCTCCGGCCTATCGT	ref_5403_upstream	30	14	36	31	18	30	25	19	7	27
TGGTTTTTGGCCTAGT	ref_5403_upstream	17	9	11	27	6	18	6	19	11	16
TGATTACAATGCGTTT	ref_5403_upstream	103	47	84	97	54	94	56	83	53	81
TGGGCTTTGGTGTGCG	ref_5403_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCTTGTCTACACG	alt_5403_upstream	111	145	165	120	158	107	169	103	197	108
GGTTCCGTCCAGGCCG	ref_5403_upstream	22	5	17	26	12	18	12	19	21	13
ACCAGCGAGTTTTTGT	ref_5403_upstream	6	1	8	11	5	8	3	7	1	8
CTGGGTTTTCATTTCT	alt_5645_new	0	0	0	0	0	0	0	0	0	0
CAGATTCCAGTTCTAC	alt_5645_new	2	0	0	0	0	0	0	0	0	0
AAGGAGCATTCTCGCC	alt_5645_new	44	57	53	29	36	43	46	38	31	38
GGGAAAACCGGTCGGG	alt_5645_new	11	17	10	8	21	8	13	5	21	6
GGGACCCTCAAACTAG	alt_5645_new	31	40	47	33	31	33	41	29	34	36
AGGGTTTAATGTCTGT	alt_5645_new	79	76	82	70	75	76	83	70	81	64
TTCCGCTCGCTCCCGC	alt_5645_new	31	33	44	31	38	35	49	24	36	19
CCGAGCTCACTCAAAG	alt_5645_new	50	226	82	48	241	53	287	53	298	52
TGCCAGGACTGCTTCA	alt_5645_new	58	69	85	81	83	46	99	66	81	55
TCAAGCTCCAACGTAT	alt_5645_new	35	27	50	31	28	26	37	24	30	16
GTTGCGAGGTGGAGTA	alt_5645_new	71	86	90	76	86	74	101	88	94	53
TAATCTACGGCGTATC	alt_5645_new	57	56	66	62	66	72	69	49	72	56
TTCGTGCGATCCAGCA	alt_5645_new	8	8	11	3	13	8	15	6	8	7
TCCAGGCTCTTAATGG	alt_5645_new	13	14	5	11	17	5	10	11	18	9
ATCTTCTGTTTGTGTG	alt_5645_new	24	35	27	18	20	29	30	25	48	18
TACGTTTTGGTCATTC	alt_5645_new	0	0	0	0	0	0	0	0	0	0
CCTTGGGCGTGATCTT	alt_5645_new	8	7	13	9	14	4	6	12	8	8
CTTCCTTACATGCTTG	alt_5645_new	0	0	0	0	0	0	0	0	0	0
AGAGGAGCCAGGGCGA	alt_5645_new	108	128	162	139	158	135	143	118	161	105
GGTCAGAAAACCGATT	alt_5645_new	14	24	19	22	26	15	22	17	26	16
TTTTGCTTCCGCGGTC	alt_5645_new	21	18	17	34	22	33	28	17	24	28
TATAGTTTCTCGGGAA	alt_5645_new	49	84	55	45	52	42	74	48	68	48
TTGCACATCAAACCTT	alt_5645_new	13	9	7	14	7	6	9	8	14	7
ACCCCGTATGCAACTC	alt_5645_new	0	0	0	0	0	0	0	0	0	0
TTTCCGCCCGGTCTGC	alt_5645_new	0	0	0	0	0	0	0	0	0	0
CTTGGCAACTCTTGAG	alt_5645_new	54	52	51	46	58	47	76	36	59	48
TGCGCTCCAGCCCCCA	alt_5645_new	51	49	58	40	45	33	46	44	50	35
GGTTAGCAAAGGCCAT	ref_5645_new	13	19	23	17	17	18	19	21	20	11
GATGTTCCTCTCGTGG	alt_5645_new	58	77	94	73	69	57	95	43	76	75
TACTTTGTTTTTGTTC	alt_5645_new	48	51	62	50	53	55	52	42	47	37
GGGGGTCTAGTGTATT	alt_5645_new	32	44	23	30	35	29	39	37	50	15
GAAATGTTCGGCCACG	alt_5645_new	7	11	12	13	17	16	10	14	9	13
TCTCATCACAGTTGCA	alt_5645_new	12	16	23	10	19	22	19	15	16	6
GCTCTCTTTCTTAATA	ref_5645_new	39	63	72	54	88	41	92	47	79	49
GACGCGCCCGTAAACC	alt_5645_new	93	86	101	95	84	86	90	77	113	72
GGGTACAGTTCGACCG	alt_5645_new	45	35	51	46	58	30	77	36	55	30
TGGTTTGCTGGATTCA	alt_5645_new	44	45	53	59	60	52	66	40	70	44
CTAACACACATACTCA	alt_5645_new	31	40	44	43	65	32	44	49	48	29
CCTTTCTCGCGTCACG	alt_5645_new	50	81	53	63	64	62	51	63	60	51
TGTTTTACTCCTTACT	alt_5645_new	7	19	7	11	6	9	5	10	16	8
CCACCGCCACGCCAAT	alt_5645_new	18	32	30	32	36	21	32	22	40	17
CTACTGCCGCGGGGGG	alt_5778_new	121	191	191	149	177	112	165	120	146	117
AATCTCTTAACACGGT	alt_5778_new	49	49	68	47	53	42	43	41	53	38
GATTAGATAATTCTTC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
ATACATAGCACATACC	alt_5778_new	2	5	9	5	3	9	6	4	7	4
TGAGTTTCAGCTACGT	alt_5778_new	101	113	137	100	113	102	115	98	137	113
CTCGTTTTTGTTCAGT	alt_5778_new	83	145	122	108	139	95	142	102	142	85
AGAACGGGAAGCTAGA	alt_5778_new	27	17	21	18	12	21	20	20	20	15
CCATAGTTTATCGGTC	alt_5778_new	68	59	60	71	95	47	85	55	89	39
AATCTTCTGTCCATGA	alt_5778_new	65	64	87	69	67	68	69	67	72	53
CATGACGTCTGGGCAC	alt_5778_new	66	58	62	70	67	44	65	59	61	49
GTAGTAATTGCGGGCT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CTGCTGTCACAGGTAT	alt_5778_new	4	8	6	4	7	10	5	4	7	3
GCTCCCGGGAGTCAAT	alt_5778_new	0	1	2	2	3	3	3	0	0	6
ATTGCCTCGAATCTGC	alt_5778_new	17	18	34	18	22	22	27	24	18	31
TGCGGCACGGTTCTAC	alt_5778_new	57	42	60	62	46	34	41	42	34	31
AACTTCGATTGTAGGT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
GGCGACAACGCTTTGT	alt_5778_new	126	153	165	142	152	137	179	105	146	122
TTCGTAAGGTATTCTG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
AGATGTCAGCCTAAAT	alt_5778_new	55	61	106	75	56	67	49	67	71	53
TTTTCTCTAGTTGCCG	alt_5778_new	2	2	7	6	3	3	4	3	6	3
GTCTGAATTTTGCATT	alt_5778_new	38	44	44	33	45	31	34	43	30	29
CTAACCTTGTGGCTCT	alt_5778_new	12	18	34	18	22	14	22	27	20	21
TGGGATTCACGCACAA	alt_5778_new	32	27	45	22	34	38	28	37	36	27
CTAAAGCGCTCCTGCT	alt_5778_new	9	10	21	15	11	18	16	24	11	11
GCTCACTACCGTATGC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
GGAGCGCGGGGATTTG	alt_5778_new	21	17	36	21	23	25	28	23	26	24
ATTGCGGCTGCATGAC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
AGAGATGTAGAGCTTA	alt_5778_new	0	0	0	0	0	0	0	0	0	0
TTTAGGTTTAACTGCG	alt_5778_new	35	46	40	29	43	29	55	20	49	30
ATCCGCACGCTTGGTA	alt_5778_new	14	23	25	31	13	18	11	20	23	17
AGTCCTTAGCCGAGCA	alt_5778_new	21	40	34	37	39	31	35	18	42	39
TCGTGCCTTGCTGTGG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CACCTAGAATGGACCC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
GTTTAAACAGGTGCTG	alt_5778_new	31	30	35	25	31	24	40	38	31	19
TTGCCAGGCGCACAGT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
ACGCTTGCACTTCCAA	alt_5778_new	99	123	109	88	103	80	92	85	107	87
AATTGGAGTTAATGAG	alt_5778_new	98	99	125	97	94	100	96	111	121	114
ATTAGGGCGTTACTAA	alt_5778_new	0	2	1	1	1	7	2	1	1	1
TAATTCGTTCCTGACT	alt_5778_new	14	14	10	14	17	8	9	14	10	18
GTCCTTTGGTCCTCTT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CTGAGTGCATCTTGCG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CCATTGCGGTAATGTC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
GACTGAGCGCTTTAGT	alt_5778_new	17	19	21	24	18	19	14	18	23	19
AGTTGCTGGCATAGTG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
TACCTCTAAGACTTGC	alt_5778_new	59	47	57	49	48	54	51	38	49	29
ATGGTTTATGTACGAA	alt_5778_new	5	5	4	5	5	2	3	0	7	7
ATCAATCTAAAGATCC	alt_5778_new	61	59	98	53	63	55	78	56	58	56
ATCGGGCGCCCAACTT	alt_5778_new	51	50	55	58	63	42	63	31	60	48
TTCATGGTTTCGAAGC	alt_5778_new	49	31	35	26	34	23	27	32	26	27
CTGATTGTCTGGAAAG	alt_5778_new	41	65	48	62	90	49	64	33	46	39
CATAAAGACTTCATGT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CGCTTCCCCAGTTCAG	alt_5778_new	5	18	8	7	9	5	26	6	7	8
TCTCGTATGCAACAGT	alt_5778_new	27	45	39	28	41	35	39	24	42	36
TGTTAATCGCTCCGGG	alt_5778_new	29	33	39	33	32	36	38	38	40	20
GCCGAGTTTATTTCCC	alt_5778_new	72	263	89	75	247	77	230	87	247	72
ATGGTTATACTTTTTC	alt_5778_new	290	268	407	321	294	331	321	327	337	236
CTTATCAGGCATAGCT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
ATCGTGCGTGCTCTTT	alt_5778_new	12	9	11	2	3	6	8	7	9	7
TCGGTATTCACGTTGG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
TGTCTGTTATGGGCAT	alt_5778_new	14	14	10	6	18	2	11	12	12	10
CACCGCATTGGCTACC	alt_5778_new	34	87	59	55	85	33	80	32	81	46
TTCATGATTTTCCCTG	alt_5778_new	18	16	26	12	16	12	18	11	10	14
ACGTGCTCGACCATTT	alt_5778_new	31	25	32	34	33	28	17	24	31	19
CGAGTATTGGCTTTTT	alt_5778_new	38	40	55	32	34	35	44	32	38	34
TCCGTAGCAGCGACGC	alt_5778_new	23	13	14	13	16	16	14	10	19	11
GACCGTTGGTTACAGT	alt_5778_new	16	6	12	10	7	11	9	7	11	4
CCTAGTCACGTGAAAG	alt_5778_new	83	106	111	86	83	91	85	85	93	77
GTTCTGTAGTATTCTG	alt_5778_new	58	80	87	85	76	58	76	60	98	51
TTCGACTGTGTTGTTT	alt_5778_new	25	15	12	17	13	7	10	10	18	15
TTGTCACTGTCTCGGT	alt_5778_new	98	90	109	95	102	83	92	103	130	70
CCCTCTCATGAGTAGT	alt_5778_new	33	33	41	31	40	39	50	29	62	42
GTGTATATGTAGGAAT	alt_5778_new	39	41	51	30	40	44	49	40	56	31
TTAACCCGTATTAACT	alt_5778_new	117	84	121	100	73	107	85	83	108	81
CTTTCATCTTGATGAT	alt_5778_new	106	62	105	78	81	92	70	80	80	78
GTACGCCGGACCTAGG	alt_5778_new	12	4	10	11	16	8	9	7	11	7
CTCTTCCCCGGTGCAC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CCGTAAAGATAGCACA	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CGCAGCTTTCTATGCT	alt_5778_new	88	112	112	108	84	84	106	78	75	83
CATTCACACGTGTGCT	alt_5778_new	21	25	29	27	19	13	25	18	17	14
CTCATCACTGGTTACC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
AGTCTATGTCTTCATC	alt_5778_new	70	62	95	62	63	74	67	60	85	61
TATCTGGGAATTGCGG	alt_5778_new	23	26	44	36	23	21	17	28	23	12
TTGGCGCGGTTACGGA	alt_5778_new	4	13	18	12	12	19	13	14	9	9
GGGATCCTCCTGGAGA	alt_5778_new	12	12	14	14	10	13	12	7	4	9
GAGACAAGCTCATCAG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
ACTGTGTGTCGCTAGG	alt_5778_new	30	40	25	19	26	19	14	32	36	23
TATTGTTAGACCGCCG	alt_5778_new	44	25	53	26	23	27	41	24	33	25
ACTTGGTGAGCGCAAG	alt_5778_new	27	24	31	27	20	35	31	34	48	20
AAAATCAAGCATCGCC	alt_5778_new	36	44	53	58	52	45	35	55	49	44
TGTTAGCTTCAAGCGG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
GATCAGTGGCTTCGGC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CCCTGTAGCTGGGCGT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
AAAGATTGTCCCAGAC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CAATGCAGTTGGGTGT	alt_5778_new	9	17	11	13	15	9	14	11	16	10
ATGCGGCCTTTGACGA	alt_5778_new	0	0	0	1	0	2	1	2	1	0
GTCCACGTTTAACGGC	alt_5778_new	11	7	8	13	7	13	10	11	14	7
GGCATACTGTCCCGTT	alt_5778_new	5	8	10	5	7	8	11	10	7	13
GTAAGGCTCGTAGTTG	alt_5778_new	2	5	3	2	2	4	6	6	5	3
GATAGTAATTATAGCC	alt_5778_new	28	36	23	21	26	19	35	24	44	19
ATCTTGGCATACGTTT	alt_5778_new	113	113	134	106	136	105	105	101	153	97
AGTGCTAGGGCGTACT	alt_5778_new	24	18	19	22	24	20	34	20	22	18
CGAATCTATGTGATAT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CCTGAGGGTGATGCTG	alt_5778_new	84	64	90	88	64	81	67	78	61	63
CCCGGTCTCTTCGGCG	alt_5778_new	45	57	60	53	50	44	64	47	61	33
ACCTGCGCATCTTTCA	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CGTTTCACGTTTATCG	alt_5778_new	0	0	0	0	0	0	0	0	0	0
TTCACGTCTCTAACAC	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CTGGACTTAGCTACTT	alt_5778_new	11	18	23	24	22	15	16	16	18	14
CCAGTATTTGCCCGCT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
CGATTAATGTGACTCT	alt_5778_new	580	552	668	605	603	536	559	578	581	558
CACGGGGCTTCCGGCT	alt_5778_new	26	9	20	16	28	21	14	13	8	12
CTATTTGCGCGTCGCC	alt_5778_new	29	25	38	23	39	24	42	24	40	28
GAATTAATGCTTCCGT	alt_5778_new	103	124	126	132	117	115	139	115	142	93
ACTGAAAACCCGGTGA	alt_5778_new	50	35	40	35	43	38	38	47	49	28
AGATTGTAAGTTTAGT	alt_5778_new	71	59	67	86	78	57	60	67	67	63
GGGAGGTTACCACCAT	alt_5778_new	73	59	93	78	64	70	63	62	75	59
TACCAGTCAGACCTTT	alt_5778_new	0	0	0	0	0	0	0	0	0	0
TTTTATATGAATGGTA	alt_5778_new	64	61	62	58	66	50	61	44	72	32
CTGTGGTGCATAAGAC	alt_5778_new	2	10	3	2	3	2	7	2	5	2
TGCGCATCGGGAATTC	alt_5778_new	30	28	34	32	35	22	31	37	23	33
CATCTTTAACTGCAAT	alt_5778_new	30	34	42	36	27	37	48	38	35	29
CTGTAAGGGCCGATCT	alt_5778_new	46	51	72	58	49	54	64	44	52	41
CTTCGCATGAGACAAC	alt_5778_new	44	70	48	65	51	35	61	58	66	47
GTATTGACATCATAGA	ref_4242_missing	12	34	12	18	36	21	24	13	20	11
TTTGAGTCCTATAGTG	ref_4242_missing	36	69	42	27	70	39	84	31	89	26
CACTCAAGAAGACTGT	ref_4242_missing	1	9	2	1	7	1	8	2	8	0
AATGACGCGGCCCCAT	ref_4242_missing	24	40	35	26	45	27	37	25	53	29
TTAGAGCTGTCAATTC	ref_4242_missing	2	5	4	8	5	3	3	3	6	3
ATACGTAGCTTCGCCC	alt_4242_missing	90	120	109	88	142	81	148	63	152	77
TTGCGTCCCACTATTA	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
GGTAGCATACATATGC	ref_4242_missing	46	75	49	38	66	35	85	47	67	55
GGCTCCGATATTTTTT	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
AAGCACGTAACCCCTA	ref_4242_missing	36	54	48	39	60	32	61	27	73	21
GAGGGGCGATTGCTAA	ref_4242_missing	16	24	25	9	18	13	18	12	30	15
GGAAATCATTACCTAG	ref_4242_missing	33	70	47	47	64	28	75	42	80	32
CTGTCACCTTTTAAAT	ref_4242_missing	25	60	33	24	76	25	60	19	53	16
TGACAATAGTAGTTGT	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
AATTATGATTGGCGTT	ref_4242_missing	338	510	386	336	554	328	551	324	544	300
GTGTATTGATTACGGC	ref_4242_missing	6	8	0	3	8	9	10	2	9	5
GTAAGGCGTCAGAATC	ref_4242_missing	8	23	15	17	28	15	14	10	20	5
CCTTCAGAGAATAGGT	ref_4242_missing	65	115	87	69	120	74	116	69	126	62
AGTAAGCGCATGGCCG	ref_4242_missing	15	17	13	22	18	13	18	15	25	9
ATTAGGGCGTCAACTA	ref_4242_missing	18	29	20	12	32	14	27	7	37	20
TAAGTAGTGCGAGTCA	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
AGTGTATGGATTCATC	ref_4242_missing	0	8	3	2	6	6	5	2	5	14
TGTCCCAGCGAGCTCG	ref_4242_missing	28	30	26	33	44	24	25	19	29	26
TGATCCCATACCGGGA	ref_4242_missing	10	11	9	8	9	13	16	11	10	5
TTGTACACGGGGATGT	ref_4242_missing	10	24	11	11	15	3	20	10	27	11
TCGTACTTATCGATAA	ref_4242_missing	26	27	21	14	21	17	21	11	26	17
GGCATCGGAGCTATCT	ref_4242_missing	38	55	44	27	59	24	43	36	62	26
CCATATTGTAAGATAT	ref_4242_missing	2	2	4	3	11	5	6	2	6	3
AATTCGTCTATCCTAC	ref_4242_missing	16	8	13	12	24	8	16	11	24	19
AATTATGAATGGCGTT	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
TCGGTTCGAAAGCAAG	ref_4242_missing	68	93	65	42	101	66	108	64	106	45
TAAGCAATCAATTTTT	ref_4242_missing	27	38	30	28	57	26	44	30	34	30
CCAGACACGTTATGTT	ref_4242_missing	17	42	22	20	41	13	42	19	57	23
AAATATGATTGGCGTT	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
TAGCTGATCTTGGAAG	alt_4242_missing	37	63	43	35	66	26	67	48	85	32
GGAACTGTGAAAGACC	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
GCGTCGTAACCTTGAC	ref_4242_missing	5	15	4	6	22	5	8	5	11	3
GTTGTATTTACTCTTC	ref_4242_missing	8	15	18	13	25	12	10	9	14	8
TTCAGTTGAGGCAGTT	ref_4242_missing	0	0	0	0	0	0	0	0	0	0
TCTGTGCTGGTACCGC	alt_5845_new	0	0	0	0	0	0	0	0	0	0
GGTAATGGTATTTTAC	alt_5845_new	12	37	25	10	28	10	28	11	17	18
TTCGCTGTTTGTTCGA	alt_5845_new	10	11	10	5	22	7	18	7	23	3
GTCCACTATTTCTACT	alt_5845_new	19	46	27	24	48	24	34	15	45	10
TACTTCATTACACTTT	alt_5845_new	0	0	0	0	0	0	0	0	0	0
AGGTTTGGAGTTCTCT	alt_5845_new	0	0	0	0	0	0	0	0	0	0
CTGCTCATGGCATCTT	alt_5845_new	3	5	2	5	6	6	3	2	5	2
CTTAACGGGTACTTTG	alt_5845_new	24	47	37	23	37	22	28	15	40	22
TGAACTGTTGGATGAT	alt_5845_new	6	13	12	9	20	11	16	6	12	1
GCCGTCAATTAAGACT	alt_5845_new	25	22	20	19	30	15	27	23	32	14
GTTTGTGGTATGGCGA	alt_5845_new	46	48	45	42	66	32	62	48	53	34
ACAAAAGAGTAGTTCG	alt_5845_new	28	62	37	30	56	27	60	27	84	26
GTTAAGCACTCATCTT	alt_5845_new	65	83	79	77	93	65	75	58	118	58
TTTGTGCGACGTATCC	alt_5845_new	0	0	0	0	0	0	0	0	0	0
TTTGATAAAATTAATT	alt_5845_new	14	31	22	17	32	21	37	18	37	9
AATGGACGATTATGTT	alt_5845_new	39	58	43	40	64	52	65	45	78	32
CCTTGACGTGGTACCG	alt_5845_new	0	0	0	0	0	0	0	0	0	0
CTGCTGAGACCTGTAT	alt_5845_new	12	12	6	7	19	10	19	7	25	7
TCTTTCGAACAAACCA	alt_5845_new	0	0	0	0	0	0	0	0	0	0
GTTTGTGCAAAGGGGC	alt_5845_new	8	12	8	6	11	13	23	9	9	9
TGGTCACAAACGGCGA	alt_5845_new	0	0	0	0	0	0	0	0	0	0
GCAACCATGTAACCAC	alt_5845_new	22	45	39	22	42	25	55	24	64	19
TACGCAACCTGAATAC	alt_5845_new	0	0	0	0	0	0	0	0	0	0
ACGCATATATCGAGCC	alt_5845_new	0	0	0	0	0	0	0	0	0	0
GCGTGTCCCTCATTCG	alt_5845_new	257	325	231	189	397	200	362	182	381	195
TCCGAAAGCTGTCCCC	alt_5845_new	0	0	0	0	0	0	0	0	0	0
CTCGATCTTTGCTACG	alt_5845_new	25	33	24	17	41	38	42	19	38	24
AAGCTACCTTCGAAGT	alt_5845_new	22	31	28	17	31	17	38	19	43	14
GCATTCTTACATCGAT	alt_5845_new	34	60	37	37	60	26	44	34	55	34
TATCTCTCTTTTTAAC	alt_5845_new	50	72	60	61	62	51	84	52	77	61
TTAGTCCGCGTTCACG	alt_5845_new	29	66	48	34	70	35	62	37	80	43
GTATTCAACCATTATA	alt_5845_new	0	0	0	0	0	0	0	0	0	0
TTGTTGCTTCATGTCG	alt_5845_new	114	148	140	110	202	146	189	126	204	111
TCGGTACTTGTACTTG	alt_5845_new	0	0	0	0	0	0	0	0	0	0
TGGGTTACCATCCTGG	alt_5845_new	1	2	4	5	5	2	5	4	2	4
TGTGCCCGCGGCTCGC	alt_5845_new	5	16	8	7	6	5	7	2	10	4
ATCGTGACTCTTTGAT	alt_5845_new	43	79	53	42	98	51	85	56	85	54
TCGATTGGGTATAATT	alt_5845_new	68	100	95	51	111	71	84	59	125	76
TTGGTATTAGTTGAGT	alt_5845_new	11	10	11	6	7	9	12	8	14	8
GACGGGAAGTCGTCCC	alt_5845_new	0	0	0	0	0	0	0	0	0	0
GACTGCTTTCTACGTT	alt_5845_new	36	53	46	32	69	28	69	24	56	32
AAGTGGCTACTCAGCC	alt_5845_new	0	0	0	0	0	0	0	0	0	0
CGCTGGTGTGTTGTTG	alt_5845_new	35	82	29	40	72	45	80	40	89	34
ACAGTAGTACAGTCAC	alt_5845_new	33	46	50	31	62	35	57	30	54	32
TCGTACGTGCTTGGCG	alt_5845_new	7	5	9	4	9	8	16	3	8	3
TAGGCGCTCGTCCCTG	alt_5845_new	18	28	26	18	25	14	26	12	30	12
ATTTATAATGCATGGT	alt_5845_new	0	0	0	0	0	0	0	0	0	0
GCGGGGCTGAGGAAAG	alt_5845_new	68	85	79	51	60	55	92	56	76	52
CATAGTGATCCTCTCA	alt_5845_new	2	4	3	6	3	2	8	8	5	3
GTGTGAGTATCAAATT	alt_5845_new	16	41	20	32	33	16	25	18	34	20
GGTCCGGCTATTGGCG	alt_5845_new	90	124	81	65	137	87	135	65	127	70
TTCAGATGAGTGCATT	alt_5845_new	0	0	0	0	0	0	0	0	0	0
ACACCTTCCTTGCACT	alt_5845_new	49	87	45	38	80	40	79	42	81	42
CTGCTTTGCATCAGTA	alt_5845_new	73	147	85	81	115	63	137	78	159	64
AGCTTTGGGCTAATGT	alt_5845_new	12	17	19	14	25	14	25	13	18	7
GTGAATGTATCGCTTT	alt_5845_new	23	52	29	26	38	24	43	14	49	26
CATTTTAGCTAAGGGG	alt_5845_new	11	26	24	17	31	13	23	10	22	18
TTCGGGTCCGTACAAC	ref_5991_new	87	143	141	81	152	70	142	72	170	85
CTTCCTCCATATATCT	ref_5991_new	3	0	2	2	1	0	1	0	1	1
TTGGAACTAAGAACTA	ref_5991_new	40	46	33	27	49	23	59	33	53	29
GAGGCTCACATTCTAT	ref_5991_new	126	264	208	148	257	134	289	135	274	125
TTGGAAGCTTTTCCTA	ref_5991_new	11	21	16	10	22	16	14	4	20	8
TCTCATGAATGGTAAC	ref_5991_new	15	17	13	11	14	13	21	6	28	18
CAATCAGACGCCGCGT	ref_5991_new	32	60	34	20	59	18	31	28	47	35
GTGGGCCATATTTTAC	ref_5991_new	0	0	0	0	0	0	0	0	0	0
ACTGGGCTATGCTGCG	ref_5991_new	39	55	40	31	37	28	53	20	52	25
AGGAAAAGAGGCAAAG	ref_5991_new	15	15	12	11	20	19	16	12	25	11
CCGTTGTTCAGAGATA	ref_5991_new	8	19	3	2	9	2	17	2	12	0
ATAACAGTGTACGACT	ref_5991_new	17	26	16	13	28	14	27	19	32	24
TGAATGTATTATCGCA	ref_5991_new	9	30	19	25	24	21	30	12	37	30
GACCGGCGAATGCAAC	ref_5991_new	6	17	5	8	15	7	16	5	13	4
AAGTGTTCGGTCTTAT	ref_5991_new	0	0	0	0	0	0	0	0	0	0
CTGTTTGGGTCAGTGC	ref_5991_new	0	0	0	0	0	0	0	0	0	0
GCGCTTGAGCTTATGG	ref_5991_new	30	36	25	30	45	21	50	29	47	21
CCGGTGTTAAGGTCGT	ref_5991_new	21	55	42	32	60	36	60	25	57	20
GCGGTACACCAGGGTA	ref_3247_upstream	18	14	30	35	8	19	6	39	5	23
ACACAGTTCTAGAAGC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTGAATCCTGTGC	ref_3247_upstream	123	47	110	115	67	107	47	107	56	91
AAGTCTTTTCCTCTGG	ref_3247_upstream	118	29	126	119	41	97	37	124	31	99
TGCCCCCGGCTTTACA	ref_3247_upstream	63	20	93	92	17	76	35	94	31	58
GCCACTTCAATCAGAG	ref_3247_upstream	137	44	159	174	31	153	41	121	38	139
GTCAAAACGTGCAGGC	ref_3247_upstream	12	2	22	13	1	16	10	9	2	12
TGAACTGTGTACGTTC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGACATTCGACTAACC	ref_3247_upstream	340	126	460	428	118	404	144	414	163	326
GCCTTCGCATGCATGT	ref_3247_upstream	39	17	56	40	19	54	17	55	19	48
TCTTATCGCTATGAGT	ref_3247_upstream	52	13	75	61	18	52	17	59	24	43
TCCTCGACGGTTTATT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAATACATTTGTT	ref_3247_upstream	1	0	2	4	2	1	2	1	0	1
GTCCGGTTGCCATCAA	ref_3247_upstream	37	10	38	28	10	27	13	23	12	26
ATGGAGATTACTCTAG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGATTCCTATCAC	ref_3247_upstream	85	29	128	109	29	100	40	89	32	60
ACTCTCTGGTTACGGT	alt_3247_upstream	201	53	224	196	58	172	57	176	64	151
AAAACTAACGTAGCGG	ref_3247_upstream	41	8	33	31	10	35	7	20	5	29
GAATTAATAGGGGCCG	ref_3247_upstream	40	14	53	35	21	37	15	40	12	45
GGACAATGTGAACGCG	ref_3247_upstream	48	15	65	68	17	58	16	62	17	53
GTTCACACCGACATCG	ref_3247_upstream	101	31	136	130	33	107	35	94	39	97
ATGATCTTCGTGTTTT	ref_3247_upstream	220	49	272	224	53	218	66	222	66	199
CTTATCCAGTTTACCA	ref_3247_upstream	122	46	159	143	33	112	61	126	56	116
GTGCAAGATCAGATCC	alt_3247_upstream	230	59	312	263	58	250	67	268	72	221
GGGAGTGTATGTTTCG	ref_3247_upstream	68	23	82	65	24	73	23	68	36	50
TCTCACGCCCTGCAAT	ref_3247_upstream	137	52	132	128	40	124	34	104	38	108
GGTCCGTTAGCAAAGA	ref_3247_upstream	365	113	404	404	109	358	138	357	117	329
TAGGGGTCCACACAGC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GACGAATTTTCAGCTC	ref_3247_upstream	42	8	35	34	11	22	10	31	2	38
CGGCCTTTGAGCTTTT	ref_3247_upstream	21	19	35	42	13	25	16	39	16	22
CAGCGGCCACATGTTC	ref_3247_upstream	106	24	145	118	46	77	28	114	31	96
ACTGACCGATAGAACT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTCCCTCTTGCCC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCACATTCCACG	ref_3247_upstream	65	28	68	61	20	53	37	44	33	46
ATGAAGTCCAAATATG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGCGCCCATTCTG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCGCGCCGCGTTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTGATATCGTGCG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTTACCTCCTTCTCAC	ref_3247_upstream	81	23	84	73	16	64	22	104	26	76
CGAGAGATATAGGTTC	ref_3247_upstream	18	4	12	21	4	15	1	5	2	9
TTGTTGCCTACCAGGT	ref_3247_upstream	135	31	171	139	31	131	38	121	38	106
TAATGAGGCATTATCA	ref_3247_upstream	42	14	62	54	14	32	11	36	9	38
CGATGTAAGGATTTCT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCACGCCTCTCAAGAT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTTCCTCATTTTC	ref_3247_upstream	17	7	29	24	7	19	1	19	7	15
TTTACGACGGATCCTC	ref_3247_upstream	146	31	206	178	58	167	64	155	56	113
ATACTGTTTCGAACAC	ref_3247_upstream	163	99	234	218	93	169	94	168	111	151
ACTTGTGGCTGTGTCA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGATGTTCCTCCG	ref_3247_upstream	266	67	332	252	86	219	90	247	65	234
AGAGTGTATTGCTGAC	ref_3247_upstream	28	13	40	33	9	47	15	24	6	45
TTCTTTAACGGGGCGT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTTGGGTGACCTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TATCTGCCGTTTCGGA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCCCCAGTAGTAG	ref_3247_upstream	290	92	387	301	96	262	90	278	81	274
GCCTATCCCTTAAGAC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCGAGTTATTCGC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCATCATTCTCTC	alt_3247_upstream	267	63	431	394	61	348	60	402	87	284
TGCTATCGCCAATGTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GCATGAATTGTTAGGT	ref_3247_upstream	7	0	11	14	3	6	3	8	8	6
AAGTGTATCCTGGTGC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTAACAAGCCCCG	ref_3247_upstream	137	31	150	124	42	100	31	95	31	118
TCACGTCGTCTAACGT	ref_3247_upstream	187	68	193	168	69	150	83	171	66	140
GCCACGCTTGATATCA	alt_3247_upstream	103	57	132	120	55	101	47	116	56	96
CCTCACCACTTGGCGA	ref_3247_upstream	103	28	103	147	36	103	41	106	36	68
GCCGTCTCGCATAATG	ref_3247_upstream	113	47	153	117	42	105	41	102	38	101
TTTTGTATATGTTTGC	ref_3247_upstream	37	5	56	36	10	50	8	33	7	24
TGTGATCGCAATATAC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTCTTTTTCCATC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
AATGTTCGGCTATTGT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGTATACAAATACCCA	alt_3247_upstream	311	47	441	368	64	360	54	337	57	314
GTTTGGGGCAACATTT	ref_3247_upstream	22	12	28	36	8	21	9	28	8	25
GCGATCATGTCAAAGT	ref_3247_upstream	328	110	420	363	90	314	129	346	120	307
GCCCGCAAATGGCACC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGACGCCGGACGA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGAGCCAGGCGTT	ref_3247_upstream	52	13	69	59	21	67	15	47	21	51
AGGTCCCGTTACCGAG	ref_3247_upstream	26	9	31	26	5	23	4	16	12	22
CTACTCCCGCGTTGAG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAGTATGCCAGGG	ref_3247_upstream	111	36	121	106	31	101	28	97	29	96
TTTTCTATCCCAATAG	ref_3247_upstream	90	31	128	93	26	88	24	89	51	67
CGTAGTGTTCACTGAG	ref_3247_upstream	20	5	25	14	5	15	5	21	8	22
TTCCTCCCTCTGGTTT	ref_3247_upstream	45	20	58	50	29	41	30	43	13	67
TTTGTTGTCCATAATT	ref_3247_upstream	122	39	181	134	52	121	54	97	58	104
TCCGGCAACGCACTCA	ref_3247_upstream	208	59	251	218	70	204	64	192	68	184
CCGGCGCTTATATTTC	ref_3247_upstream	162	64	220	214	70	187	66	169	67	157
GCACTTATAGTACCTA	ref_3247_upstream	6	3	5	4	2	7	6	7	3	5
TCGATGTAAGTCGTTA	ref_3247_upstream	51	23	83	62	21	52	14	40	15	49
CTGCAGCGCTCTAATA	ref_3247_upstream	37	22	71	44	7	38	15	37	14	31
TGTAGGTCCCTGTCGC	ref_3247_upstream	20	13	16	15	18	18	22	17	18	11
CTCTATGGGTGCGATC	ref_3247_upstream	93	29	101	99	28	89	30	79	22	70
CATCGGGAAAGTATGT	ref_3247_upstream	401	127	448	385	126	350	125	371	145	331
GAAGCTGATATGCTGC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGCCTAGCGCCGT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCCAGGTACGTGTAGT	ref_3247_upstream	395	170	419	396	190	366	195	334	239	340
GAACTCTATCCATATT	ref_3247_upstream	9	4	24	24	5	18	8	24	2	18
CTATCAAAGAGCGGCC	ref_3247_upstream	136	58	206	162	48	181	57	138	57	119
CTTGCTATATTAATCA	ref_3247_upstream	11	5	18	20	2	12	6	14	6	12
TATTCGCCCCTCTATT	ref_3247_upstream	357	113	473	378	86	323	115	330	117	303
CTAGCCACTTACACTA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
AATCTTACTGTCCCGG	ref_3247_upstream	180	63	206	194	62	169	57	158	66	165
ATTTGTTAGCCCTCTG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTAGGTGTAGCTGTAC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCCGTTGCAGAGC	alt_3247_upstream	194	40	243	248	33	170	33	191	55	197
GTTGGGTTACAATCGT	ref_3247_upstream	161	71	245	183	60	179	63	202	73	186
GGCCTTCCGGAGTAGA	ref_3247_upstream	84	27	107	107	17	85	20	94	34	94
CCTCCCGCCCCGCAAA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCTTGTACCGGAC	ref_3247_upstream	22	5	27	35	10	20	6	20	6	18
AACTTCCGCCCGGCAG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCGGTTGTATGTC	ref_3247_upstream	102	55	142	111	46	92	49	113	54	93
AAAATCTGGCTTCGCT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CACTCTCTCATGTCCC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTAGTGAATTTGCACT	ref_3247_upstream	246	74	300	276	81	237	89	261	90	255
ATGACCGGAGTGCGTT	alt_3247_upstream	71	14	87	82	25	61	26	66	23	71
ATTCAAACTCTATTCG	ref_3247_upstream	34	18	68	67	12	33	13	54	20	54
ATAGCTTATTCTTACG	ref_3247_upstream	159	40	198	148	50	138	38	157	55	136
TGTCCATGTACCGTGG	ref_3247_upstream	95	38	119	104	43	92	30	93	43	74
GTACGCATTTGTCAAG	ref_3247_upstream	28	18	39	26	11	34	7	26	11	27
TGTCGCTAGCACCGTG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGTCATGTGATTACGC	ref_3247_upstream	54	22	58	52	15	56	20	51	12	48
CTCCGTTTAAACTAAC	ref_3247_upstream	99	35	109	97	27	78	30	114	34	79
TGGACAAAATTGTGTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTGGCCCTTCTAT	ref_3247_upstream	22	2	14	35	5	17	7	32	12	9
ACTTATTGTGATGTCA	ref_3247_upstream	1	1	2	2	1	1	0	1	0	1
GAACGATACACGGCTA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACATGTGTCTATCTTA	ref_3247_upstream	47	26	76	55	20	51	13	59	17	54
ATTCGTGGTTAGGGCT	ref_3247_upstream	55	17	50	61	11	53	17	45	15	64
GATTGATAATAACCCC	ref_3247_upstream	210	44	206	169	54	164	57	159	44	138
TGTACAGTGCTTACGA	ref_3247_upstream	10	2	16	15	1	13	3	9	5	9
TAAGTAGGAATCAGAA	ref_3247_upstream	273	81	304	294	65	271	81	265	94	256
CGTACCCTTAGTGTAT	ref_3247_upstream	140	47	192	184	67	153	59	163	57	153
GTGTCAGCATGTGCCG	ref_3247_upstream	129	49	183	159	42	151	59	158	67	124
TCAGTTCTCTCCTGTG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGATTAGTCCGTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTGTAGGTGCGG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGAGTTCTTGGCT	ref_3247_upstream	88	22	114	108	35	79	50	119	47	69
CCTGTCGTTGGACACG	ref_3247_upstream	109	34	126	122	33	118	28	106	42	102
CTTGGAAATTTATATA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTTTGTTAACTAA	ref_3247_upstream	14	6	13	29	14	22	11	23	11	12
TCGCGTCGTGGTTAGT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TAGGATGACGCGGGAC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCCATGTGTTAC	ref_3247_upstream	265	83	345	300	79	272	99	245	91	213
TCATCATACGCAGATG	ref_3247_upstream	121	44	155	121	43	103	42	109	33	113
CTGTTCAGTGATCCGC	ref_3247_upstream	27	13	34	34	8	30	20	17	12	26
TTTCTTCGCTTCGGCG	ref_3247_upstream	62	9	79	46	14	53	19	49	17	42
TTATCTATGACTAAGT	ref_3247_upstream	54	13	60	45	18	44	5	37	11	38
TTAAGACCCCCTCTAC	ref_3247_upstream	15	4	10	12	2	8	2	2	4	8
TTAAACTGTATCCGTG	ref_3247_upstream	90	32	131	110	34	99	29	100	31	82
TCTTTGCGACAGTATC	ref_3247_upstream	48	7	35	27	18	42	15	26	15	27
CTGTGCATATAGCGGG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCATAAACAGCTGTTA	ref_3247_upstream	311	90	355	330	69	268	105	270	75	275
ATACGGAGCGTGGTAT	ref_3247_upstream	13	3	15	14	3	9	4	4	2	16
CTGAGATGCGCATTGT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACGACAGTCAATGAAT	ref_3247_upstream	45	14	47	47	26	40	13	33	21	49
AATAAATCCACTTTCA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGCTATAAGCTGTGAT	ref_3247_upstream	32	3	18	22	12	27	12	19	12	21
CTTGTTCATTATGGAG	ref_3247_upstream	42	14	59	61	11	39	14	38	22	42
CATTCCTACCATGTGC	ref_3247_upstream	609	242	793	728	251	613	266	693	267	562
CCTAAACGTCATATAC	ref_3247_upstream	14	10	18	13	21	17	11	20	18	16
ATTAGGAGACGTATAA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCAATACTACGGATTG	ref_3247_upstream	275	109	394	301	99	260	87	287	121	262
GGGCTTAAATTTCATA	ref_3247_upstream	8	1	7	5	7	9	1	4	0	13
TCCTCTGTCACGAGAT	ref_3247_upstream	162	53	194	182	75	152	68	154	49	159
TATCACACGATTTTTG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
ATACCGCTTGCTACCG	ref_3247_upstream	78	32	107	83	23	59	28	87	29	63
TATGAATCAGACATAG	ref_3247_upstream	104	32	154	128	29	99	26	129	38	99
GTATTATGGCTATTTG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GACAGCTTCTTCGGCT	ref_3247_upstream	76	23	92	93	27	66	26	72	27	70
GGGGATTATCGTTTTC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGATTTGTCACCTACG	ref_3247_upstream	229	78	277	222	90	188	101	214	95	180
CGTACCTTCCATGCGC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCTATCCTACGTTCTG	ref_3247_upstream	102	30	129	132	43	107	34	112	32	112
TCGTTTTATTATTATT	ref_3247_upstream	292	80	391	331	102	298	77	316	88	255
ACGGTGAGGGCTCTAT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTCGTCATAGTCG	ref_3247_upstream	1	0	0	0	0	0	0	0	0	0
GATCGCCATCATACTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TAAATTAATAAAGTAC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TAAACAGCCGTTCGGG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTCGTCAAAGTCG	ref_3247_upstream	55	81	77	67	91	66	84	60	73	79
TATATACGTTATGGTG	ref_3247_upstream	77	24	115	81	31	95	30	73	30	90
GCATGGTTTCCCTCTG	ref_3247_upstream	49	8	38	40	16	52	13	32	14	23
CAGGGCACTCCATGTC	ref_3247_upstream	22	13	32	40	11	41	15	22	11	22
GTACGGAACCTCCAAT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTTAAAACCCTCT	ref_3247_upstream	71	29	88	64	17	51	31	49	19	48
CCGCTACAGTCCCAGC	alt_3247_upstream	259	79	386	315	70	285	98	301	105	242
TTCCTTTCGAACTGTA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GATGAGATCTTTGGTA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGTCAGTATGTGTGGT	ref_3247_upstream	147	30	139	143	46	124	47	114	42	105
AGGATATCCAGCGAGT	ref_3247_upstream	296	90	331	345	116	278	96	302	114	275
GTACTAATTCAATTGA	ref_3247_upstream	151	25	168	162	50	157	42	128	52	138
TCTGTGTCGCCTTCCT	ref_3247_upstream	73	18	77	57	18	62	22	66	29	57
CTTGTAATCCAAATTT	ref_3247_upstream	263	85	328	298	79	244	73	298	83	296
TTTCGGTAATATCTTG	ref_3247_upstream	92	36	112	77	28	72	42	94	21	84
GCTTTATCTTCTGTCA	ref_3247_upstream	29	15	43	38	17	29	11	36	3	29
GTTAGTCGTAGCATTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGGGGTCATACGT	ref_3247_upstream	65	23	80	69	16	65	24	68	16	59
ATAACGTATGTCTAGA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
AAGATGTCCGTAGTGG	ref_3247_upstream	269	87	310	265	74	236	78	229	78	228
GGTCGTAATCCCTTTA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGCCACACACGGTATC	ref_3247_upstream	123	56	183	166	32	135	36	137	37	112
CGTTTAGTTAGCACTA	ref_3247_upstream	35	5	39	25	16	26	7	24	10	32
GGTTCAGCAGAGGACC	alt_3247_upstream	129	29	173	172	28	145	30	171	29	153
TTGCTACATCCCGGTT	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCATATGCGTTCTCCT	ref_3247_upstream	32	4	37	29	6	21	6	22	12	24
GCTCTTCCCTTTCAAT	ref_3247_upstream	169	36	198	177	40	144	41	161	56	127
TGGATTACTATTATTA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CAGGGCTTGCCGTTGC	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTATCCATCAGTTCTA	ref_3247_upstream	23	4	20	17	3	17	4	13	4	22
ATTTGTTTAGGTAGTG	ref_3247_upstream	33	12	44	42	19	36	15	52	9	29
CCTCATAAATGCGGTC	ref_3247_upstream	37	17	62	59	20	53	20	40	15	54
GCGGGCCGGTATGCTC	ref_3247_upstream	24	6	30	27	6	18	6	22	12	23
TTTTAATCCAATCGAA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCACCTTGCGCAG	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
AAATCCTTTAGAATTA	ref_3247_upstream	115	27	157	128	35	119	43	107	33	97
GTTTCGGATGAGCCAA	ref_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGTGAGTCATTCAGTG	alt_1709_reverse	13	28	20	26	33	10	23	29	23	15
TGTAATTATGCTTTCT	alt_1709_reverse	10	20	11	5	25	11	20	10	22	10
CATGCAATGTGAAGTC	alt_1709_reverse	12	21	22	10	29	9	20	13	27	17
ATATAGCACCAGATCT	alt_1709_reverse	14	22	18	24	20	8	19	13	20	15
AGGAATTTCTAGGAGC	alt_1709_reverse	9	34	12	17	26	13	26	24	27	14
CGGACCTTCCGACTGC	ref_1709_reverse	15	16	10	18	26	14	26	8	24	9
TAATCTGTGAAAATGG	alt_1709_reverse	8	16	7	6	12	6	11	7	13	10
TAAGCATCCTAATTCA	alt_1709_reverse	17	22	14	15	30	16	28	15	23	10
GCTTTTCCTGAGAATC	alt_1709_reverse	24	29	19	27	36	10	39	14	45	21
GCGTCGAAAGTAACTT	alt_1709_reverse	0	0	0	0	0	0	0	0	0	0
CAGTATTATGCAGCAA	alt_1709_reverse	12	18	15	19	20	18	14	9	21	10
ACGTTGGGATATTCAT	alt_1709_reverse	11	23	12	9	19	11	14	7	16	11
ATAATACTACGTCACA	alt_1709_reverse	9	23	13	10	30	9	29	12	21	8
TTGTACGACTAGAGAC	alt_1709_reverse	3	6	6	3	12	2	13	11	8	4
GTTCTTACATACAATG	alt_1709_reverse	0	1	2	1	2	1	5	1	0	0
GCATCGGCCATTCTCA	alt_1709_reverse	14	11	8	7	12	7	14	5	19	9
AGCGCTCGCTTCCAAG	alt_1709_reverse	12	42	38	23	40	20	50	14	38	20
TAGCCTGTCGCTTCAC	alt_1709_reverse	80	149	106	51	149	76	155	55	179	87
TTGAATGTAGCTGTAT	alt_1709_reverse	37	63	46	31	54	49	60	30	84	32
TTTACGTCGATTTTTT	alt_1709_reverse	28	61	47	23	62	27	52	26	41	35
GAGGTCTGTGTACACT	alt_1709_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGATCTGTCGTCA	alt_1709_reverse	117	218	119	143	211	105	229	102	235	96
TATTGAAGACTCTGGA	alt_1709_reverse	24	33	27	8	30	19	26	16	42	17
GAGTGCACAGTCATTG	alt_1709_reverse	7	4	5	2	6	1	4	0	7	3
TTTTCATCGCCCGTTT	alt_1709_reverse	429	780	500	461	731	392	781	417	856	393
TGTGCTCCGCAGCTCT	alt_1709_reverse	14	23	15	13	29	11	19	10	24	16
TACACGGATGTCATCC	alt_1709_reverse	56	105	60	51	119	56	111	53	118	57
TGTGAAGCGAGGAGAC	alt_1709_reverse	26	39	43	31	46	29	41	20	44	19
TAGTATTCTTCGTAAA	alt_1709_reverse	0	0	0	0	0	0	0	0	0	0
CTATGCCAATGATTGG	ref_1709_reverse	56	94	63	54	114	39	107	35	106	41
AGTCCCAACTACATAA	alt_1709_reverse	32	77	23	38	58	34	82	35	70	23
AGGGTAGCTGTGTACA	alt_1709_reverse	20	33	26	20	38	25	48	22	36	19
CTATGTCACATCACGG	alt_1709_reverse	25	31	21	23	40	30	43	21	31	25
TATTATCCTAATGGCG	alt_1709_reverse	16	29	16	19	35	11	24	12	26	18
ATTCTCGAGCAATTAT	alt_1709_reverse	39	50	54	40	58	47	68	38	80	35
GGAACCCGTCTGGCGG	alt_1709_reverse	15	40	15	17	36	7	33	7	39	14
TCTCGGGAGCAATAGT	alt_1709_reverse	9	10	13	10	13	7	17	8	14	12
TGTTTGTATGCGAAAG	alt_1709_reverse	24	30	23	35	31	20	56	8	51	25
CGATCACATCTGGCAG	alt_1709_reverse	49	63	43	51	61	52	75	42	92	31
AAATGGTCCCTTATGC	ref_1709_reverse	89	110	91	63	129	62	128	57	139	79
GTCCAGTATCACCCTA	alt_1709_reverse	13	36	15	14	41	24	35	11	31	21
TAGAACTGCGTGAGTT	alt_1709_reverse	22	28	20	12	10	14	30	16	28	18
CACTAAAGGCCCTGGG	alt_1709_reverse	26	71	57	51	81	39	94	50	79	36
ACGAGATGCCGGATGT	alt_1709_reverse	7	9	14	7	10	5	11	8	15	5
TAGCTTTGTCTGGAAT	alt_1709_reverse	15	26	11	17	36	21	28	14	47	17
CCTGGAAAATCAGAAC	alt_1709_reverse	12	20	20	12	19	15	17	10	28	14
TTTGTGTATGCTCCCC	alt_1709_reverse	5	20	6	11	23	4	24	13	25	10
TCCTATGACACTAAGC	alt_1709_reverse	33	115	45	50	103	47	112	55	109	39
ATTATCTATTTTCGGC	alt_1709_reverse	42	49	38	36	63	43	54	36	68	36
ATTTCATCGCCCGTTT	alt_1709_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGGTTGTAATAAT	alt_1709_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCGTGTCGGATAC	alt_1709_reverse	11	47	11	11	45	7	44	10	50	8
TTTTCATCGCCCGTCT	alt_1709_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTAGCAACGAGCA	alt_1709_reverse	12	23	11	12	12	10	13	8	18	11
CACTTTGCGTCGTTTA	alt_1709_reverse	46	87	56	42	97	53	86	36	99	31
TACTGATTAACCCACT	alt_1709_reverse	22	48	35	33	58	22	69	26	49	27
CACCTCCGCTCCTCTG	alt_4264_reverse	32	76	48	53	60	38	60	55	71	29
GGCACCCGAAAGGTGC	alt_4264_reverse	12	15	18	17	22	23	24	17	24	13
ATTCTGTTCCGTGCAC	alt_4264_reverse	50	89	65	59	83	50	105	53	106	46
TTGCTCTTCTGTGTCA	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTGTGTCCGATTG	alt_4264_reverse	81	87	78	59	89	71	116	62	115	64
ATTAGATTGAGAGGAT	alt_4264_reverse	26	46	29	30	26	21	46	34	52	30
TAGACGACCTATAATT	alt_4264_reverse	8	31	19	13	11	17	18	5	17	13
AGTCCGGTGGCATGAC	alt_4264_reverse	50	73	67	38	71	64	89	38	99	32
GGGTTCAAAGACGTAA	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
TCACTAATGCCCTACC	alt_4264_reverse	3	5	6	3	7	5	3	1	8	0
CTGTTAGACGAGCGTT	alt_4264_reverse	39	69	41	28	58	25	58	39	82	21
AAATTAAGTCTCAGGC	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
GATAATCATCCCCTAT	alt_4264_reverse	60	72	74	46	83	48	95	51	82	53
AACCAGCCTAACTTCC	alt_4264_reverse	13	27	19	9	26	12	18	10	18	3
TAAGCAGCGCGCTAAT	alt_4264_reverse	7	24	10	13	12	18	23	10	21	10
CTCCGATGGTAGTGCT	alt_4264_reverse	2	18	13	9	15	4	20	3	21	9
TATTCGCAGGCCCAGT	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
GTATTGTAAAAGTCAC	alt_4264_reverse	84	167	99	96	126	110	147	91	162	88
GTCCGAGTGGTCATTT	alt_4264_reverse	41	58	33	36	43	21	44	22	60	16
GTGGTGGTGACGCTCT	alt_4264_reverse	36	58	44	36	30	45	60	32	55	32
TATTTTTTGTTCGGTG	alt_4264_reverse	37	66	49	76	76	46	71	45	81	43
CGTCTTTCTCACGGAT	alt_4264_reverse	8	21	30	13	18	17	29	11	12	17
TGGGGACCCGGACGGT	alt_4264_reverse	45	45	32	27	59	30	52	20	49	32
TTGGAATTCTTCGCCA	alt_4264_reverse	114	114	120	78	128	83	156	67	112	90
TTGTCGGGTCATCCAC	alt_4264_reverse	20	29	25	32	31	32	31	27	51	18
TGGCTTCATGTTTTTC	alt_4264_reverse	73	92	88	67	98	72	88	72	117	50
TACGAATCGTCTCGAG	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGCTATCCATCAC	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
CCGGGGGCGATTATAT	alt_4264_reverse	69	129	89	87	110	81	112	61	110	74
TGGCACTCTAAATTTT	alt_4264_reverse	45	52	37	34	66	37	56	34	44	30
CATCGACCCTATGCTA	alt_4264_reverse	0	2	0	0	0	0	0	0	0	0
TAAGGTTACAATTCAG	alt_4264_reverse	34	59	28	38	36	30	36	29	43	26
TCATACTGTGGTGACT	alt_4264_reverse	54	72	69	64	75	52	87	44	94	60
TTGGTACTGGGTTGGA	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCTACCAGGTGCA	alt_4264_reverse	0	0	0	0	1	0	0	0	0	0
CTTTTTCAGATTAGTT	alt_4264_reverse	134	216	153	128	219	137	203	129	194	120
CCTGGGTGCGAGTTTC	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
GCTCATCCACCGACGT	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
TCTGACCTTAGTCGGT	alt_4264_reverse	93	168	96	103	173	77	160	91	199	75
CGTGCATGGTTCATCT	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCTAGCGGTGAGC	alt_4264_reverse	20	60	33	28	43	22	49	27	50	28
TTAACGGAGGCCGGGT	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
TGACACTTTACGTAAG	alt_4264_reverse	21	29	20	27	42	19	28	17	30	15
CACTATCGTGCCGTGT	alt_4264_reverse	50	69	54	54	71	36	61	54	75	50
GCCCGCTTTCATACCG	alt_4264_reverse	28	28	32	20	22	21	53	20	45	23
TCCACTATTGCTAGGA	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTGCTTACGTTTG	alt_4264_reverse	23	49	30	24	37	17	45	23	23	31
GGTGTTGGTGATCAGA	alt_4264_reverse	23	28	43	21	48	20	55	23	41	28
ATCGCAGGGTTGAGCC	alt_4264_reverse	38	51	58	32	71	42	61	31	57	34
CTCAATCTTCATGGGA	alt_4264_reverse	11	22	11	13	11	13	9	7	17	13
GGCTCGTTAGCATTCT	alt_4264_reverse	2	1	2	0	4	1	3	1	0	2
TTGCCTTAGGATATGG	alt_4264_reverse	27	46	32	32	47	26	37	20	39	15
TAGTTTGGATCTTCTT	alt_4264_reverse	124	163	108	112	184	119	166	111	143	94
AGCATAAGGTCTCCCG	alt_4264_reverse	25	37	31	15	40	24	34	24	33	22
TTAAGACTGGCTATTC	alt_4264_reverse	33	34	36	28	30	24	56	27	54	32
CGACGCAATTCTTATT	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
CCACTATGTTACGGTC	alt_4264_reverse	0	3	4	2	7	4	5	4	3	0
TTCTATTCCGGTCGAT	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCGAGTCGTTATG	alt_4264_reverse	17	17	19	15	23	10	21	20	30	7
GCTTGCCGAATTGCCT	alt_4264_reverse	71	113	96	61	123	64	126	61	145	55
CACATTCTCTATAGCC	alt_4264_reverse	10	25	7	10	16	10	13	11	15	11
CATAGCACGTGTATTG	alt_4264_reverse	50	72	62	55	78	37	76	43	80	46
GAAACCTAGCCTGCGA	alt_4264_reverse	18	30	23	24	36	22	32	17	21	15
GTCGCCGAGATGCCCT	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
TGCACATTTTTTACTC	alt_4264_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTTGTCAATGGTC	alt_5767_new	13	20	9	15	12	2	17	9	24	10
TCCGGAAATCTACGTT	alt_5767_new	18	34	26	22	47	18	34	19	32	23
TACGTCTTGTGGCCGC	alt_5767_new	0	0	0	0	0	0	0	0	0	0
TCCTGTAGTCTTTATT	alt_5767_new	40	79	60	48	63	36	76	45	63	44
CCCGTACCATTGACTA	alt_5767_new	0	0	0	0	0	0	0	0	0	0
CCACTTTTCTATTTGT	alt_5767_new	0	0	0	0	0	0	0	0	0	0
CTACTGACGATCTCAC	alt_5767_new	35	61	46	34	46	31	59	27	46	37
CGCCGTGCTGTTCCCG	alt_5767_new	28	34	36	34	30	23	40	25	39	19
GTTTGGCAGCAACAGA	alt_5767_new	0	0	0	0	0	0	0	0	0	0
TCTTCCATGCTACACT	alt_5767_new	9	20	14	10	22	7	13	8	10	4
GCTTTAAGGAGTTGAT	alt_5767_new	146	156	171	156	166	120	176	129	190	109
GACCTAGCAACTTCGG	alt_5767_new	0	0	0	0	0	0	0	0	0	0
ATTCAAGATCATTAGG	alt_5767_new	27	44	35	32	35	20	28	34	28	34
AGAAACTGTTGGTATC	alt_5767_new	116	158	144	124	161	92	142	87	159	123
TACATTTCCGCCATTG	alt_5767_new	117	140	172	125	155	118	150	119	175	100
AGGCCATAGCATTCTA	alt_5767_new	0	0	0	0	0	0	0	0	0	0
GTATATATCTTGTTAC	alt_5767_new	22	21	21	11	22	14	17	10	31	13
GTCTACCTGTTTTTGT	alt_5767_new	27	38	33	29	43	33	50	41	63	17
CTGTTTTTCGCCCATG	alt_5767_new	103	114	117	105	128	94	137	92	121	111
GGCTGCCTTTCTCACG	alt_5767_new	0	0	0	0	0	0	0	0	0	0
GAGGATACCGCCAGGT	alt_5767_new	30	32	36	35	22	24	27	22	35	24
TTCTGTTTCTTGTGGG	alt_5767_new	35	48	49	30	45	46	55	37	42	51
GGGTGGTCGTGTGCAT	alt_5767_new	0	0	0	0	0	0	0	0	0	0
ACGTCCACTTGTCTTC	alt_5767_new	11	22	10	3	23	5	17	2	11	6
GGTATCGGTTCAGTAA	alt_5767_new	0	0	0	0	0	0	0	0	0	0
TTCCCAGACTGTAGGC	alt_5767_new	8	9	7	7	8	1	7	2	10	6
GCTTTCTCTCAACGCG	alt_5767_new	11	25	20	19	32	20	15	8	36	10
CTCATCTGTATCGGCA	alt_5767_new	82	141	96	82	156	80	153	76	159	59
CATTGGATCGGGATGA	alt_5767_new	23	32	18	17	26	25	24	13	31	16
TTTCCGAGCGTAAAAT	alt_5767_new	17	31	20	16	13	13	15	23	14	16
TACTTAAGCTTCGTGT	alt_5767_new	45	73	59	50	88	37	84	46	85	47
GGGGCTCTGCCCATAT	alt_5767_new	33	60	37	31	53	29	61	30	59	31
TCAGAACGGTCTGTTC	alt_5767_new	7	7	8	5	12	2	16	3	19	8
GCGACCACGTGTCTTA	alt_5767_new	40	45	41	32	47	35	43	38	41	30
TCTTCTGTTCCGCTCC	alt_5767_new	17	28	18	15	24	13	27	24	20	14
CGGACTACCCCCGTCT	alt_5767_new	2	2	1	1	1	0	2	0	3	0
ACTATTAGATGGCGTA	alt_5767_new	161	171	188	148	205	143	200	144	235	144
GTTACAGTCGTTCCAA	alt_5767_new	47	63	46	41	71	37	70	34	78	42
CGACTTAGGCTTTCTA	alt_5767_new	158	179	168	172	187	142	222	122	191	125
ATGGGTAATGACGCAC	alt_5767_new	9	12	10	9	12	7	19	10	10	5
TCGAAATAAGTCTCTG	alt_5767_new	57	113	74	58	105	59	125	63	121	56
TCGCGAAAAAGTCCTT	alt_5767_new	6	4	6	9	8	3	12	9	11	5
GATTGCTAATTTGTTT	alt_5767_new	57	70	72	51	65	29	57	41	77	50
CATTACGATCCTGTAT	alt_5767_new	52	43	54	51	57	38	59	30	55	41
GCGTGGCTTGTCTAAG	alt_5767_new	41	63	56	41	60	36	58	35	54	32
TAATCTCCTACTGGCA	alt_5767_new	6	5	4	11	10	4	12	4	7	6
ATTAGATTTAAACGCA	alt_5767_new	1	1	2	2	4	2	3	3	4	1
TGGTTCTGAACTTTGC	alt_5767_new	28	108	45	45	129	23	120	40	112	36
CTCCTATTATAGATGT	alt_5767_new	4	9	13	4	5	1	6	6	4	1
TCATCATCTTAGTCGT	alt_5767_new	48	76	60	54	82	52	81	43	80	64
ACCATTGAACAACAAA	alt_5767_new	43	54	48	49	64	21	55	33	53	43
TTCATCTTTTCGCCTG	alt_5767_new	25	31	31	30	32	28	28	34	27	17
TCCACCAATTGATATT	alt_5767_new	25	27	32	14	48	18	27	27	37	13
CAGGTCGCAACGTGTA	alt_5767_new	6	6	6	5	10	3	17	6	8	3
TTTGGTTCCTAGACCG	alt_5767_new	197	289	241	222	327	158	321	197	313	153
GCTTGGTCATGCATTC	alt_5767_new	15	10	7	4	16	7	10	6	9	8
TCGGACCCTGAAGCCG	alt_5767_new	21	42	23	25	29	22	33	22	28	21
GGTTCGCACGTGTCCT	alt_5767_new	16	22	16	13	24	13	15	17	15	9
GTTAGGCCCCGCTATA	alt_5767_new	46	40	44	34	40	37	54	47	43	32
GACGTTTGAGGGTATT	alt_5767_new	0	0	0	0	0	0	0	0	0	0
TCGCTACTGTCTCTGC	alt_5767_new	10	15	20	17	27	11	32	19	25	9
GCTTAGGTGTTTACAT	alt_5767_new	17	33	21	15	18	20	33	17	32	18
AGACATGCTCGCGTCT	alt_5767_new	139	148	136	98	143	108	137	99	151	129
TGGCCATAGCATTCTA	alt_5767_new	115	175	127	109	198	109	164	116	182	130
GCGTTCGATGTTCTTT	alt_5767_new	7	8	8	5	6	5	15	6	4	7
GCGTTTACACATCCTT	alt_5767_new	30	45	52	26	61	32	53	22	68	18
TGTCCTCCCAGGTCCT	alt_5767_new	37	53	40	37	58	32	44	36	57	31
CTACCACGCTACGGTA	alt_5767_new	21	34	29	20	49	24	38	17	40	18
GGAGTCAAACGGACTG	alt_5767_new	0	0	0	0	0	0	0	0	0	0
ACGGTCGGGTCGTGGG	alt_5767_new	22	59	27	22	46	11	58	11	48	13
AACGCGCCGGAGGGCT	alt_5767_new	89	97	95	96	100	82	105	75	91	81
TAACTTTAAGTCGGGA	alt_5767_new	7	6	7	6	3	4	8	4	8	3
GCTGTCTCATGGAATT	alt_5767_new	36	33	39	20	50	15	32	18	34	20
TAGGCAGGCTCGTTTT	alt_1218_reverse	13	24	38	21	17	21	16	18	28	16
TTTTTCGCTCTGTCGG	alt_1218_reverse	40	48	29	38	38	36	36	38	47	29
TGCCATTCCCGCTTTG	alt_1218_reverse	29	30	39	30	46	29	47	21	52	13
CATGCCTCCTGTTCTA	alt_1218_reverse	24	32	23	27	34	22	17	21	32	17
GTCTCGTATGTTGTCC	alt_1218_reverse	66	41	49	47	71	49	70	40	66	43
CACGCTGACTTGGTAG	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
GCGTATAATATATTAT	alt_1218_reverse	9	10	8	9	22	8	9	13	8	3
CACACTCGTTTAATTG	alt_1218_reverse	45	60	58	57	84	46	79	40	84	63
TTAGCGTAGTCCTAGG	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
ATTACTTGATTGTGAT	alt_1218_reverse	69	81	101	82	70	56	64	63	77	44
TTAGACCAGTCGTGAC	alt_1218_reverse	22	41	41	34	42	35	58	20	43	26
GTATTCTCCTTGCCAC	alt_1218_reverse	11	21	11	10	19	12	19	8	14	10
TAGAGGTAGTGCCGCA	alt_1218_reverse	95	112	98	101	109	92	103	98	127	90
GAACGAGGGGAGGAAT	alt_1218_reverse	28	25	27	21	29	12	19	25	41	18
CCTTGTTTAATACGTG	alt_1218_reverse	17	40	31	25	41	28	45	19	44	21
TTTTTCGCAGCGGCTC	alt_1218_reverse	19	27	28	19	20	21	31	20	21	20
CTGTGTCTTTCCCGGG	alt_1218_reverse	7	5	1	0	2	2	1	3	3	1
TGCGTGGCGGTCATGA	alt_1218_reverse	45	37	73	59	45	50	46	45	61	50
CAATCTCTGAATGTAT	alt_1218_reverse	23	39	40	29	44	22	38	31	37	22
CACGTATCTTGTTCCC	alt_1218_reverse	5	3	7	9	7	5	10	4	9	5
TCTGTGCGGTATGGCA	alt_1218_reverse	156	215	187	163	190	141	193	121	203	132
GGAAAGTATCGCCTGA	alt_1218_reverse	10	16	18	14	28	19	22	11	10	12
GAAGATCAATGGGGGG	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
AAGCAGCCCGTTAGCT	ref_1218_reverse	150	186	209	170	215	159	204	134	191	141
GGAGGCCCCGCTTTAC	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
GTCGAGAATCGATTAT	ref_1218_reverse	95	84	98	84	84	68	91	62	111	61
TCTTAGAAGGCGAAAG	alt_1218_reverse	6	12	18	6	16	15	17	10	11	7
TACGGTAGTTCGCGTT	alt_1218_reverse	7	14	9	15	10	10	15	6	11	10
GCATCTGGCACTACAT	alt_1218_reverse	92	98	90	70	114	90	106	100	109	62
GCAATAAGACCTAATG	alt_1218_reverse	28	22	43	30	30	27	38	16	33	28
TCCGTTGGTTAAGTTG	alt_1218_reverse	27	45	29	35	35	18	47	33	56	28
CTCAGCTCTTTACGGA	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGTTGCATTTCGG	alt_1218_reverse	88	90	95	81	67	55	82	70	90	50
TTGAGACTGCTGTAGT	alt_1218_reverse	39	46	49	22	51	34	41	37	42	19
TCTTACTACCGAATGC	alt_1218_reverse	30	44	33	27	45	25	24	18	27	19
GGTATGTTTCAATGAA	alt_1218_reverse	2	3	7	2	6	1	1	3	3	6
CCGATAATACTCTAGC	alt_1218_reverse	13	21	16	10	20	16	31	9	25	15
TTATAGCGTTGCTGAA	alt_1218_reverse	20	29	30	33	38	30	37	23	39	28
CCGGTTTTAACTTTTA	alt_1218_reverse	8	11	12	11	10	10	10	19	13	10
CGCTCTTGCTGTGCGT	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
GGTGAGGGGTCTTACC	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGTATAACTTGGT	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
TGATGGTTTACTATGG	alt_1218_reverse	28	30	42	42	33	35	38	25	37	32
GGCTTGGGTGTGATTC	alt_1218_reverse	38	82	65	61	56	40	70	41	61	36
GTATTTGCTGGTGTCG	alt_1218_reverse	25	29	20	25	24	22	26	27	23	19
ACTAATTACACCTTCT	alt_1218_reverse	49	33	37	44	44	28	46	23	54	41
GTATCAAAGATGCGAC	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTAATCATCTCTT	alt_1218_reverse	4	10	14	13	9	9	7	5	6	6
CATCACGCCCAGTATG	alt_1218_reverse	94	151	113	127	186	107	179	92	177	98
TTTTCGCCGTATGGTA	alt_1218_reverse	21	25	21	29	37	19	45	25	37	22
GATTATAATTTTAAAC	alt_1218_reverse	20	26	24	28	38	21	32	31	35	26
ATTTCTATTGTCATGT	alt_1218_reverse	47	67	73	43	65	35	60	55	70	42
TTGTGTCATCATACAA	alt_1218_reverse	37	64	42	38	64	38	56	47	58	37
TTGGTATCTTATTGGC	alt_1218_reverse	3	1	1	3	1	2	4	0	4	0
GTAAGCTGCTGCGTTA	ref_1218_reverse	78	69	87	67	57	54	63	57	88	67
TGATTTCAAAGGTCCG	alt_1218_reverse	3	7	1	7	6	4	2	2	4	5
CCTCTCACTATTATTC	alt_1218_reverse	20	46	32	35	42	29	35	26	42	20
GACGGGCCGATCCAAC	alt_1218_reverse	2	1	6	2	7	0	8	4	6	1
TCGGTTTCCTCTAGAA	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGGGGATAATCCC	alt_1218_reverse	3	9	10	4	7	4	7	3	6	11
AATCCGTGGTGGTCCT	alt_1218_reverse	26	17	37	23	19	19	26	22	36	14
CCGAGTAATCTGCTGG	alt_1218_reverse	2	7	4	1	5	3	9	0	8	0
GTTTCTGTATATAGCG	alt_1218_reverse	18	18	14	22	20	11	22	11	16	15
TAGCGAACTCCTTTCC	alt_1218_reverse	69	73	69	68	74	61	79	56	86	53
ATTGTAGTGTCTTACT	alt_1218_reverse	58	68	65	65	73	41	72	65	89	64
GGATTGTTCAGCTTTG	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
AACATGCGTCCTTCTG	alt_1218_reverse	50	31	44	28	51	58	36	47	62	41
TTATGGGCTCCGAGCG	alt_1218_reverse	7	8	4	6	11	5	11	8	8	3
TGTGGATGATTTGAGA	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGATGTCCCATCC	alt_1218_reverse	20	14	17	16	14	15	25	12	26	10
ACATGCAACTATTCTC	alt_1218_reverse	35	20	33	24	44	25	29	32	32	26
AGAGAAGGAGTTCGTT	ref_1218_reverse	19	28	22	33	31	29	26	24	33	21
CATTGCCCGAGACGCC	alt_1218_reverse	12	8	1	3	6	8	10	12	12	6
GGGAGTAAAATCTACC	ref_1218_reverse	4	6	10	4	8	4	6	7	9	9
ACTAGTCTACACTGGT	alt_1218_reverse	0	0	0	0	0	0	0	0	0	0
CGGATCGAGTCATTTT	alt_1218_reverse	2	13	2	1	13	3	8	0	5	1
GAATCGCTGCGTGTTG	alt_4428_missing	0	0	0	0	0	0	0	0	0	0
GTTTTCCTGTAGATGC	alt_4428_missing	0	0	0	0	0	0	0	0	0	0
CTGTTTCCCTGCATAA	alt_4428_missing	29	36	44	35	36	21	37	28	41	21
GTTTCCCATGTTCGCC	alt_4428_missing	32	64	40	42	61	40	54	39	65	37
AGATTGGTCCTATTTC	alt_4428_missing	71	69	72	51	63	57	80	58	69	50
TGACTGTATTGGCTAT	alt_4428_missing	50	55	62	79	63	65	72	44	60	48
AGCCCTATGGTGTGTC	alt_4428_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTCTCGACCTTA	alt_4428_missing	111	113	100	97	108	105	117	81	128	79
AGAGCCATTTAGCTAT	alt_4428_missing	60	84	81	85	102	65	95	68	93	63
CCCCCTTACTCGGCTG	alt_4428_missing	117	254	138	102	243	107	236	94	293	88
CTACCGTCCGGTCTGT	alt_4428_missing	17	16	16	11	30	21	16	12	25	9
TGAACCAAGATAAATT	alt_4428_missing	4	8	15	9	5	9	5	10	6	5
ACCCAAAAAGGCTAAG	alt_4428_missing	38	45	42	38	58	59	42	38	46	46
ATCTTAAGCGTACGTT	alt_4428_missing	10	12	9	6	10	6	12	4	5	8
CTACCCACTGGGCCAT	alt_4428_missing	19	50	19	12	29	15	30	19	50	22
TGCGTACAACACGGCC	alt_4428_missing	47	50	55	48	57	44	59	36	49	29
TGGTCTCCCCAGAAGC	alt_4428_missing	0	0	0	0	0	0	0	0	0	0
ATTGCGAGGCACGGAC	alt_4428_missing	14	11	19	14	18	14	17	10	14	15
TCCGGGACCCCGAAAT	alt_4428_missing	90	167	151	106	149	104	143	103	165	81
CCTTCAGCACAAAATT	alt_4428_missing	0	0	0	0	0	0	0	0	0	0
GATAACTGTCACAGCC	alt_4428_missing	10	14	10	9	10	10	19	13	19	6
CGATCTTATACGGGCT	alt_4428_missing	10	11	8	10	10	6	9	6	10	5
TATCTGGCGCTGTCTT	alt_4428_missing	26	37	32	33	33	23	23	29	42	29
CAGACTGGCCGTCATA	alt_4428_missing	15	30	19	28	35	26	27	27	31	12
TGGAAAAATTGCTAGG	alt_4428_missing	129	139	163	116	161	107	157	128	167	110
CATCCCGTCAGTTTCT	alt_4428_missing	11	13	13	7	19	9	16	6	22	12
TGACTTTATTGTTTTC	alt_4428_missing	25	27	25	29	21	26	26	18	19	21
TCGCGAGGTTTTTTTA	alt_4428_missing	73	71	67	70	70	64	82	54	70	43
ACGCCGCGATTGCCCC	alt_4428_missing	37	61	53	35	48	41	45	30	76	47
TGACGTGTCTATATTC	alt_4428_missing	18	48	34	21	37	26	42	28	49	29
CACGCGTACCCGATCG	alt_4428_missing	26	33	18	28	20	25	27	13	27	27
ATGGTACCGTTCCCCG	alt_4428_missing	0	0	0	0	0	0	0	0	0	0
GCGAGCATGCTTCGTG	alt_4428_missing	16	25	25	20	25	12	17	24	24	12
CCTGACGCAATAGCAA	alt_4428_missing	27	28	27	25	16	21	32	18	29	20
GGGTTGGTTTTGTTCG	alt_4428_missing	14	19	14	11	21	10	7	12	13	10
AAGTCCTCTTCGCCGC	ref_1097_missing	0	0	0	0	0	0	0	0	0	0
CACTGCAGCAGTACGG	ref_1097_missing	12	2	19	9	5	10	4	5	9	11
GCCACGCAGTTGACCA	ref_1097_missing	41	39	68	75	41	43	40	47	48	50
CACCGACTGATACCGG	ref_1097_missing	53	29	57	44	35	48	33	47	28	52
TGAGTGCGGGCTTATC	ref_1097_missing	0	0	0	0	0	0	0	0	0	0
GAATTGAGGGCACGCG	ref_1097_missing	55	36	48	64	27	49	28	41	39	45
TAATGTACGCGATCCA	ref_1097_missing	11	9	16	22	10	13	6	12	11	18
CTTTCTTTATCTCTCG	ref_1097_missing	0	0	0	0	0	0	0	0	0	0
CTCCATTGTGCAGTAT	ref_1097_missing	18	11	25	23	14	20	9	11	24	19
GATGATCTATCTGTTC	ref_1097_missing	0	0	0	0	0	0	0	0	0	0
GTGAATTGGGGAAACC	ref_1097_missing	60	44	68	62	43	74	40	45	37	56
TATTTGTTGTTCGCCC	ref_1097_missing	35	43	47	43	29	43	19	44	45	45
TCGTTGCTGTGTGTTG	alt_6054_new	3	6	5	8	8	2	7	0	9	0
TCTTTCGTGCCTCGGG	alt_6054_new	12	16	11	10	18	18	16	15	22	9
GGAGGGTATGTATCTA	alt_6054_new	47	69	42	43	77	41	55	41	65	29
TTGTCTATCAACGCGC	alt_6054_new	21	38	29	25	52	20	27	20	44	21
TACAACGCGGGCGATG	alt_6054_new	18	37	24	20	37	17	35	20	35	24
TAACGTGAATCCTTGT	alt_6054_new	4	2	0	4	0	3	5	5	1	3
ATTCCAGATGAAACAT	alt_6054_new	36	31	20	24	50	24	23	20	42	13
TAGTCTGAGGTCGGCG	alt_6054_new	27	36	32	12	45	25	52	11	35	13
GAGATTACGATTGATA	alt_6054_new	10	19	14	9	19	14	24	12	26	11
TTAGGCGCCAGTGGCT	alt_6054_new	0	0	0	0	0	0	0	0	0	0
CTCCTTGCAGAATCAA	alt_6054_new	2	3	0	0	1	0	4	1	2	0
ATCCCACTGCGGTTGC	alt_6054_new	0	0	0	0	0	0	0	0	0	0
AATATTCCGAGCTAAT	alt_6054_new	22	25	26	41	32	26	45	28	39	29
ATGTAAGGTATTTATG	alt_6054_new	61	106	67	58	149	51	126	42	128	59
GACGAACATGCCATAA	alt_6054_new	0	0	0	0	0	0	0	0	0	0
TATCTTCTGAAATGAC	alt_6054_new	0	0	0	0	0	0	0	0	0	0
TAGGGATTTTGCTAGC	alt_6054_new	11	22	18	20	30	8	19	18	36	14
TAGCATGGGATAATCC	alt_6054_new	6	13	12	12	18	9	22	20	10	6
AGCATCTTCTTGAGTT	alt_6054_new	45	89	70	56	88	64	87	48	107	46
AGTCTCGATAACGGCT	alt_6054_new	31	31	25	28	47	13	40	29	32	27
AACTCTCCATCACATG	alt_6054_new	4	18	9	8	28	7	20	6	17	6
TCGGGGTGCCGAACCA	alt_6054_new	19	29	14	15	28	12	33	22	31	20
AAGTTCCTGCTTGTGA	alt_6054_new	0	0	0	0	0	0	0	0	0	0
CTCCATATAACTTTTG	alt_6054_new	21	17	28	23	36	24	28	18	36	21
GAGAATATGCTAAAAC	alt_6054_new	165	277	204	154	306	185	275	169	302	145
GCTAGGCCTAAGTTCT	alt_6054_new	70	105	87	59	116	51	105	57	101	57
GTAGCATTTTAGCAAA	alt_6054_new	98	155	135	80	180	102	148	86	166	97
GTAACCAAGCGGCATA	alt_6054_new	40	87	66	52	93	62	100	45	96	48
CTCTTGCGGTTTTTAA	alt_6054_new	3	7	5	8	15	12	10	7	13	9
GTTAGCCGCGCGCTTC	alt_6054_new	3	5	3	2	5	1	2	2	11	3
TAAGTACCCCCTCATA	alt_6054_new	0	0	0	0	0	0	0	0	0	0
CGTGTCGCTACTGTGA	alt_6054_new	19	33	25	10	42	17	49	25	28	18
TTCCTCTCGAAAACAA	alt_6054_new	0	4	4	1	1	1	1	4	5	2
TTCTCAGTCAGCTTAG	alt_6054_new	44	88	36	26	76	46	73	34	85	37
GGTGTGCGATTGCAAC	alt_6054_new	35	51	36	26	57	38	59	37	66	32
GCTGCTTCCGTCTTCG	alt_6054_new	0	0	0	0	0	0	0	0	0	0
GGGTTAGGTTCACTTT	alt_6054_new	0	0	0	0	0	0	0	0	0	0
TATTTATTATGTAAGC	alt_6054_new	9	9	11	7	9	8	12	6	10	5
TTCCCCGAACTGTAGC	alt_6054_new	0	0	0	0	0	0	0	0	0	0
CTACGTCTGATCTATA	alt_6054_new	181	336	234	183	375	215	352	191	391	163
TTTATATCCAAACATC	alt_6054_new	68	107	81	59	137	60	117	61	132	59
ATTCCGGCTTACAGTT	alt_6054_new	17	10	7	13	14	11	17	4	14	12
GTAGCTCTCTGACAGA	alt_6054_new	63	135	82	66	146	52	133	63	135	63
CGTGCCCCCGAACAGT	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTTTGTTTTTCAC	alt_1246_fdr	1	2	9	3	3	1	4	1	8	5
TTCTGCATCGTATTTC	alt_1246_fdr	11	7	10	16	9	11	9	4	17	5
AGGTCTACTAGACCAA	alt_1246_fdr	96	126	76	75	163	83	132	78	151	93
TCTGTCATAGCTTTTC	alt_1246_fdr	25	38	33	38	52	37	41	33	57	27
GCGTGTCTTAGTGCTA	alt_1246_fdr	25	42	35	22	50	25	46	22	53	27
ACCTCAACGAAGGGTC	alt_1246_fdr	31	55	37	42	52	31	39	32	54	28
CACAGGTATGATTCCA	alt_1246_fdr	21	31	18	27	17	8	26	15	31	19
GTATGTAGAAAGCACC	alt_1246_fdr	5	9	11	5	7	5	6	5	1	4
TGTTCCAGCACTGTTT	alt_1246_fdr	20	19	20	12	13	14	15	14	18	9
TGACTATGTCCACTTT	alt_1246_fdr	31	34	49	34	32	29	42	33	36	26
ACGTCATCGCAAGTAC	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
GAACCTTATCCTTCCT	alt_1246_fdr	107	161	151	146	161	137	151	141	174	115
CTTTGTGAAGCATCAT	alt_1246_fdr	22	17	31	23	31	20	32	17	35	18
CTTTTGGTGTGAGGCA	alt_1246_fdr	17	20	20	12	28	18	29	10	32	13
TATTATTTTAGGCCGC	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGAGAGCACCATG	alt_1246_fdr	7	8	9	4	4	4	7	4	11	5
CTTTCGGAATTACTTG	alt_1246_fdr	53	88	75	54	72	53	76	40	102	55
GCATACATGGAGTTCA	alt_1246_fdr	7	11	11	13	4	11	18	7	14	4
GGTTGCTTGACTGCTT	ref_1246_fdr	66	75	62	57	94	56	75	50	63	45
AACTTCGATCCTGGTT	alt_1246_fdr	25	33	22	21	26	23	37	17	25	17
GGTTGAAACGGTATTC	ref_1246_fdr	3	5	4	6	8	6	12	7	12	3
AAGTTCATTGTCGGAT	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGACCAGTATGTC	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
GTCAAGGAGGTTCGAA	ref_1246_fdr	147	170	175	149	181	153	189	135	195	113
CCTGTCTAGAACAGTT	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTACAATCCCTAA	alt_1246_fdr	77	63	90	56	61	61	85	67	98	53
AATCAGTCTGTCGTAA	alt_1246_fdr	4	6	9	5	7	4	5	9	3	9
AATCGTGTGCTAAGCA	alt_1246_fdr	1	4	1	3	3	5	3	3	4	2
TGACCTCCACGGCTCT	alt_1246_fdr	109	180	153	110	190	127	142	108	159	113
GTCGGCTTTAGTCGCC	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
TATGTTCGCTATGTAG	alt_1246_fdr	36	42	54	36	51	27	56	37	42	37
TCAACTACGGGGTAGG	alt_1246_fdr	19	38	22	19	36	34	44	22	26	31
CTTGTATTAAGGAGGC	alt_1246_fdr	15	29	17	20	26	15	26	21	23	24
GGTCAATACGGCACCC	alt_1246_fdr	23	30	40	29	37	28	33	32	42	32
CCCAGAACCCAGGTGT	alt_1246_fdr	37	80	50	31	60	33	66	35	76	28
TAGGGTGCTGTCACGG	alt_1246_fdr	33	42	47	35	46	25	32	36	44	32
GTTTAACGTTTCACTC	alt_1246_fdr	9	31	16	15	26	13	29	12	30	15
TCTTCAATAATGTTTG	alt_1246_fdr	25	42	40	29	34	49	36	32	33	35
GTGTGCCTCTCTATGT	alt_1246_fdr	16	20	23	25	17	20	22	16	16	15
GACTCCTTTGCGTTAT	alt_1246_fdr	46	81	76	56	73	46	101	63	74	55
TGACGCTCCGTCGTCG	alt_1246_fdr	23	51	15	23	28	13	47	13	42	11
TACCGTTTAATGCTAC	alt_1246_fdr	37	41	30	35	33	17	40	23	58	18
CAGTCCGCTACCGCTT	alt_1246_fdr	11	23	10	17	18	15	21	13	17	11
GAGTTAGCTTCGTTTG	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
CTACGATCCCCGTATC	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCTCTTGCCTGTG	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCCCTGGTTTTGG	alt_1246_fdr	49	54	48	34	54	43	59	52	66	36
TCGATTTCAACAATCT	alt_1246_fdr	68	47	52	57	72	41	57	44	70	36
TCCGCCCAGGGCTCTT	alt_1246_fdr	23	32	28	17	17	20	42	15	22	26
CTTTTTCCAAGTAGGC	alt_1246_fdr	45	51	59	55	63	47	57	44	50	67
ATTCCCCTACCGTTCT	alt_1246_fdr	51	96	78	68	107	71	111	55	93	64
TAGTACACAACTTTTA	alt_1246_fdr	133	132	131	130	139	115	151	93	166	95
ATCATTCTCAGGTCAT	alt_1246_fdr	114	118	148	63	119	113	117	109	139	92
ACCACGTGTGTTTACT	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
AGACATTTGGGCCATA	alt_1246_fdr	0	0	0	0	0	0	0	0	0	1
ATTGCTATCTACCCCG	alt_1246_fdr	16	52	28	19	77	31	73	21	74	15
ACCCAGCACTTATCCA	alt_1246_fdr	78	120	105	88	138	77	94	69	123	77
GACCGGGATATCTTGA	alt_1246_fdr	67	92	110	68	83	67	82	88	112	55
TGGGAAGACCGGTCCA	alt_1246_fdr	16	13	17	14	14	10	21	15	18	11
CATCCCCGGTCTTAAC	alt_1246_fdr	12	32	27	29	45	25	50	19	42	13
CTTATTGGGGGCAGGC	alt_1246_fdr	83	110	80	101	119	78	94	78	124	64
TATAAGTGCGGTTTCA	alt_1246_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGAGTTACATCTC	ref_1246_fdr	8	6	10	15	17	12	6	2	9	7
GGGTTTGCTTTAGGGG	alt_1915_missing	6	4	7	14	15	3	6	4	6	6
CACATTGTGACATGGG	alt_1915_missing	26	16	26	24	22	15	18	22	26	19
ACAAGCATGTGGGTAA	alt_1915_missing	11	8	13	8	6	10	19	9	9	23
CAGTTAAGCACCGTTC	alt_1915_missing	123	144	168	144	148	100	145	106	146	108
GTCGGTCCTGCTCATA	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
CGGTGGAGCTGAATAT	alt_1915_missing	21	22	25	26	22	18	17	18	18	19
GGGAACTGATGCCCCT	alt_1915_missing	45	39	56	41	40	63	63	59	36	42
CTATAAGGGGGTTCCA	alt_1915_missing	11	6	6	14	17	11	8	11	12	5
CAGAGGCAAATTTACT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
TCCATTTCACCTCGCT	alt_1915_missing	151	187	199	162	175	154	172	174	168	135
AGGGTAGGTTGCAGTG	alt_1915_missing	70	67	95	86	79	83	82	80	65	69
CCTTCTCCCGATCGCG	alt_1915_missing	98	105	113	102	96	80	104	81	107	69
TCCGGTGTTTTTTGGT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
TATCCTGTGCTTTTGG	alt_1915_missing	8	13	12	13	13	3	19	4	19	6
TTGCGTGTCTCTTGTT	alt_1915_missing	39	46	32	46	22	36	50	29	43	24
AAGTTACAAGTGCAAT	alt_1915_missing	23	27	46	39	35	33	54	34	41	30
CAGGTATGTTTATTAA	alt_1915_missing	41	31	55	39	53	34	30	54	38	32
CACTCCGTCCTCGGTC	alt_1915_missing	2	9	9	10	14	7	13	6	8	6
TTGTTCCCGATTCCAT	alt_1915_missing	97	83	120	86	84	97	85	89	104	103
CGAATCTGCGATCTGT	alt_1915_missing	97	71	103	71	66	69	71	67	101	75
AATCAAAACTCTTTTC	alt_1915_missing	74	54	85	60	61	55	61	73	61	63
ATTGATTCAGTTGATT	alt_1915_missing	83	57	100	74	73	66	73	73	72	57
GAAGCATTGAATATGT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
CGAACCTAGTCGCTTC	alt_1915_missing	81	72	92	82	95	83	83	77	114	72
TTCATGAGGCAACAGG	alt_1915_missing	98	95	125	83	104	74	83	93	126	58
TTTAACTACTGGGGAG	alt_1915_missing	186	227	214	236	230	183	226	195	209	180
CGCTAGCCTATATTGT	alt_1915_missing	18	23	38	29	25	25	28	23	31	21
GGCAGTGTATTGTAAG	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
TAAGATGTTACCATTA	alt_1915_missing	7	2	8	8	6	5	4	3	4	6
GCTAAGTACAATAGAT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
TCTTCGATCGCTTAAT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
AAACGTGGGTCTAGGC	alt_1915_missing	56	44	56	41	50	31	54	61	46	30
GGTCAGATCTGTGGGG	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
TCTCGGGGCATGCTCC	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
CATATTTTGTTCGAAG	alt_1915_missing	1	7	4	0	4	7	1	2	8	3
AGTATGTACACCCAAG	alt_1915_missing	7	4	7	6	4	3	5	12	9	8
GTCGATGGATCTGTCT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
CGGCCAACCTATTCCC	alt_1915_missing	2	7	7	17	9	0	3	3	5	5
AGGGGGCACTTTTCCG	alt_1915_missing	30	49	50	40	62	21	52	43	69	39
TCAGGTGATCCTTTTG	alt_1915_missing	4	7	6	7	4	6	5	5	8	5
GTCATTTATGCTGAGG	alt_1915_missing	0	0	1	0	0	0	1	0	1	1
AAAATGAGAACGAGCC	alt_1915_missing	126	115	148	119	114	93	87	100	108	100
TTGGGGGCGGGCTGGG	alt_1915_missing	38	44	60	57	45	53	52	41	49	51
TTGCTACTAGCCAATA	alt_1915_missing	51	108	91	79	91	74	134	74	110	74
ACCCTGTTATTCCGAT	alt_1915_missing	3	3	9	7	7	4	7	4	2	1
TTGGTCCCCCATCCCT	alt_1915_missing	44	33	50	41	28	50	45	28	39	32
ATAACGATGCTTTTGG	alt_1915_missing	26	37	39	20	23	22	29	19	50	30
GACTGAGTTCGTATTA	alt_1915_missing	31	22	28	33	40	33	28	26	39	27
GAGTCTCAACACCATA	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
GGCCCGTTAGGTCTGT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
ACTGTTAGTTTCAACA	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
GCTCCGGTTATCAAGC	alt_1915_missing	265	240	276	235	234	227	284	197	303	195
GATTAAGCGCCGTGCC	alt_1915_missing	4	7	3	7	4	2	9	5	2	2
AGGGTGTGGCGTACTT	alt_1915_missing	0	4	3	0	4	9	4	4	4	1
CTCTCCAATTAATGCT	alt_1915_missing	92	118	96	102	97	101	108	82	95	69
AACGGGCCCCGAGTTT	alt_1915_missing	137	117	136	159	127	138	131	134	111	107
ATGCGTTGCTGTTATT	alt_1915_missing	6	3	6	7	4	2	5	7	6	5
GGTCCATTCGCCTAGC	alt_1915_missing	11	29	19	24	34	16	24	28	31	20
GACACACATCAGCATG	alt_1915_missing	122	148	139	139	147	103	138	123	165	128
CTTCATAAGGTATCTC	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
TCTTTGTAGAGGGAGC	alt_1915_missing	32	38	44	53	48	42	34	35	44	35
GGTCACTCCACCTCTG	alt_1915_missing	2	3	2	0	8	2	5	0	3	0
CGTTTCATTTTGTGTA	alt_1915_missing	11	10	18	11	5	18	15	10	20	11
AGGTGGTGCCAGTAAA	alt_1915_missing	11	7	16	13	13	11	3	16	9	15
TTGCACCTTACTGGCT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTGCGCTGAGTT	alt_1915_missing	0	0	0	0	0	0	0	0	0	0
CATATGTCCTCCGTTA	alt_1915_missing	6	7	16	4	7	12	13	12	12	8
CGGCCGGTGTATTGCT	alt_1514_fdr	192	116	239	198	109	196	154	208	168	188
ACGTACTGCGAGATCC	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
ATATCAGTTAATCAAG	alt_1514_fdr	32	25	36	28	12	31	33	30	23	23
CCAGTGTTGAGCGTAA	alt_1514_fdr	100	119	106	128	161	92	156	96	181	77
CTTACTTCGCCTCTAT	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTTCTCACACTG	alt_1514_fdr	27	35	31	29	32	22	25	20	23	32
TGAGTCCGCTAGGAAA	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAAGACATTATGT	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
CATTCGTATTTCCATG	alt_1514_fdr	65	40	78	87	33	59	61	55	42	56
GGTGCATCTAACCTAT	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGGGTGTTTGCCC	alt_1514_fdr	15	21	26	21	21	19	20	18	24	12
ACAGCTACGATCCGAT	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTATGCACCTAGT	alt_1514_fdr	23	14	10	13	9	11	12	10	13	7
ACTTTGGTTCCATAAC	alt_1514_fdr	44	26	46	36	23	47	33	47	32	39
CATTTGGGTACAATCA	alt_1514_fdr	103	55	107	110	77	74	64	85	86	89
GTGTCGAAGTACAATC	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCACTGCCATTCG	alt_1514_fdr	16	24	19	28	11	11	16	17	16	14
GGCCACAATCCGATGG	alt_1514_fdr	10	5	8	5	4	3	2	9	8	4
ATATGTGGTTCGGATT	alt_1514_fdr	32	36	42	36	29	27	29	36	25	34
TTTCCGGCAATACCGT	alt_1514_fdr	11	11	26	17	18	20	11	22	16	18
CCTTCTAATAGTAGTG	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCCGTTAGGAGAA	alt_1514_fdr	53	20	38	57	30	24	42	38	21	31
CATTCGGGGGTACGTA	alt_1514_fdr	18	11	21	19	10	17	8	12	11	13
GGCCTCTTCCCACGTA	alt_1514_fdr	9	7	5	7	6	7	6	4	4	6
TTCTCCTACAAACCAG	alt_1514_fdr	53	33	75	54	33	33	46	59	42	34
GGCATATTTTCACTGC	alt_1514_fdr	67	40	85	69	51	75	60	62	56	59
TTTCGAGTGTAGTCCA	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTGGGACTGACTA	alt_1514_fdr	49	28	52	52	33	48	38	48	35	39
ATATCCTTTTGCTGAC	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCTTCCCGTGCG	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTCGTTATTCAAG	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
AAATCAGTTAATCAAG	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
CAGACAGATCATCCAA	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
CGACTAGTATTGGTCG	alt_1514_fdr	94	84	133	129	78	92	86	93	69	90
CTATTACAATTGCCAG	alt_1514_fdr	69	54	76	78	56	79	87	73	78	68
CTCCTGTAACATAAGT	alt_1514_fdr	31	27	36	35	34	37	25	31	30	27
GGTAGTTGTACGGCCC	alt_1514_fdr	17	9	21	22	10	9	15	12	8	17
CCATGCTCTCGAGGAG	alt_1514_fdr	185	101	193	174	122	165	131	165	121	149
TAGATTTAATTCTCCT	alt_1514_fdr	21	15	28	19	13	24	10	24	28	20
GGTATTCTCATCCGTT	alt_1514_fdr	99	70	128	88	84	96	91	65	104	91
TCCGTAGCGCTATGTC	alt_1514_fdr	46	32	50	33	43	29	42	25	42	36
CGTCAGCATTCAGTGT	alt_1514_fdr	2	5	8	8	8	4	6	5	8	5
TACCCACATGGAAATT	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
TACGGTTGCCTCTGGC	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
GGGATAATGTCGGACC	alt_1514_fdr	25	26	49	53	15	31	21	23	18	40
TAATTTCCGATAAAAC	alt_1514_fdr	85	64	88	78	60	78	67	79	60	84
TTGATATATCCTGAAG	alt_1514_fdr	1	5	5	4	4	3	4	4	0	4
AATCTAAAGCCTTGGG	alt_1514_fdr	21	13	28	12	20	15	14	29	15	23
ACAAAGACGCAATACT	alt_1514_fdr	19	13	24	33	18	24	9	13	13	22
CTCTATTTAGTTACGC	alt_1514_fdr	5	5	4	5	2	5	4	11	3	7
AGCGTGCCGCCTCAAA	alt_1514_fdr	49	47	76	76	32	53	49	63	43	49
GGTCTAATACATATCA	alt_1514_fdr	35	26	41	43	23	31	21	44	26	40
GTGGTCGCGTTAGCAT	alt_1514_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTCTCCGTTGGCT	alt_1514_fdr	24	15	14	18	19	23	11	15	8	18
AAGTGTTGACATCGGG	alt_1514_fdr	48	31	47	54	35	47	28	49	36	44
CTTATATAATGCGTAC	alt_1514_fdr	0	1	3	3	2	0	3	3	2	2
TTACGTAGTCGTTGTT	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
AACTGTGCTCATTTGG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TATATAGTGGTTGCAG	alt_4440_missing	1	7	6	2	11	3	7	3	11	3
CCTCTTAGGGAATTTG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TACCTGGTATATTTGT	alt_4440_missing	2	3	3	2	21	3	10	1	16	4
TCTCTTTCTCACTCTG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TTAACTCTAGACACCT	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TTATCAAGGCGCTCGT	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
AAACAACAAACAATGT	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
CCGTTTTAAAGTGAAA	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
CCTGCCCTTCCACAGT	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TCATATCGTAGCGTAG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TATGTGTACGTGTGGC	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
CCGTGGTGGCCTATAA	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
ACAGAGAATCACTCCT	alt_4440_missing	3	18	5	6	11	6	15	13	12	8
AACGTATGTTATGCAG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TATTTTTGAACCTTAG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TTGTTACTGGATACAC	alt_4440_missing	7	15	12	4	35	12	19	11	11	4
TTAATTTTCGGTCTAC	alt_4440_missing	5	10	5	2	21	9	14	5	16	6
TGTCCTACGACTTCGC	alt_4440_missing	1	1	1	0	0	0	0	0	0	1
CTAGGCTCGTTGCGCA	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
AGTGTCACACAGTCAC	alt_4440_missing	3	2	4	8	7	2	7	1	8	3
GGACTGTATAGGAGTG	alt_4440_missing	0	15	3	2	6	2	16	4	23	3
TGCACCAATTTTCCTA	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
AGTTCTAGGGTAACAG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TTGCGTAATAATGTGC	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
ACCGCTAGTCGTGCTT	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
TTACATTCCCTTCAAG	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
GCCACATGCGCGTGCA	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
GGATGCACACGCAAGT	alt_4440_missing	1	10	7	3	10	4	12	3	20	2
GTTAAACCCCCCTTGG	alt_4440_missing	1	9	2	2	6	3	11	0	7	3
CTTGCTCAGCGAAACG	alt_4440_missing	1	0	1	2	3	0	3	0	3	0
CGTTTTTCGAACTATC	alt_4440_missing	0	0	0	0	0	0	0	0	0	0
CACCGTGTTCTTAGTC	ref_919_upstream	29	53	26	20	26	20	40	13	40	27
AGGATGTGTTGCTGTT	ref_919_upstream	72	70	97	90	59	76	60	74	55	60
GGTTATTAAATATGAC	ref_919_upstream	14	17	20	23	20	16	15	25	11	18
CGGCCTGACCTAATTC	ref_919_upstream	2	8	2	1	5	3	5	1	5	3
CGCATTTGGATGCGCT	ref_919_upstream	65	82	87	60	82	44	100	49	77	49
CTTTTCACTTGGTTGC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTCCTCACTCTCT	ref_919_upstream	121	93	138	122	100	89	105	129	109	124
TGTGTATTTCAAAAGG	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCAGTCGCCTTTT	ref_919_upstream	43	22	42	47	20	35	35	40	37	34
TTGTTCTGCGCAATGT	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTGTCCACAACAT	ref_919_upstream	59	55	87	77	49	69	47	64	41	55
TTAGGTTTCTCGTCCG	ref_919_upstream	15	8	13	15	12	16	10	12	16	21
GGCCGGATGTCCGCCT	ref_919_upstream	25	14	30	27	21	25	21	27	27	10
CCAGGCTGTTCTTCAG	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTTAGTCGGACTA	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TGATGCAAGATTCTTA	ref_919_upstream	23	18	28	21	7	23	17	23	14	22
TATCCTTCCGCCTGGC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GCCATGGTCCTCCGTG	ref_919_upstream	4	4	14	14	7	5	4	6	4	8
CGTTTGCCCGGGTGGA	ref_919_upstream	22	10	19	12	12	18	7	7	10	21
TCCCTCGGTTGCTTTA	ref_919_upstream	60	42	69	49	49	47	52	46	43	51
ATCTAATTAATATAGC	ref_919_upstream	123	86	137	140	73	133	99	121	86	108
CGGGGACATATTGTCT	ref_919_upstream	13	9	17	19	11	12	4	13	7	13
CTATAATGTTTCCGGT	ref_919_upstream	43	36	47	45	44	24	49	26	41	31
GCCCTAGTATTAATTG	ref_919_upstream	26	19	29	20	13	21	22	18	12	19
GGGGGCAATTTCAACC	ref_919_upstream	105	77	97	91	81	91	82	85	83	89
TTTTAGGCCCCCCTTT	alt_919_upstream	54	32	79	64	25	54	35	50	39	56
TAGGGGTTATTGTCCG	ref_919_upstream	68	42	55	73	51	57	50	56	43	69
CACTTCCCAATACAGT	ref_919_upstream	28	35	40	37	29	24	36	22	37	25
CATTGTTAAGCACTGT	ref_919_upstream	4	8	11	7	7	7	2	7	7	4
CTCGCACTTGGTGTGG	ref_919_upstream	15	14	12	18	17	11	15	15	18	10
TTTGGAATTCCACCAG	ref_919_upstream	63	40	66	69	50	46	39	53	50	61
ACGGACCATATACCCA	ref_919_upstream	36	21	27	35	22	29	22	27	28	27
GCCCTTACGTCCACAC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTTCCAGAACGA	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTTTCGTCCAATC	ref_919_upstream	22	16	25	18	25	29	16	24	18	16
TCGGCACATTCCTAGC	ref_919_upstream	8	4	11	7	8	5	8	7	11	7
TGCTGTGTTTGGAGGT	ref_919_upstream	129	91	131	120	106	127	80	127	117	110
TCATATCATATCCGTT	ref_919_upstream	75	63	104	85	61	68	72	82	58	73
ATTGGGGCCTTATTCA	ref_919_upstream	225	184	258	249	206	247	184	259	208	237
AACTCGTTTGGCTTGC	ref_919_upstream	6	6	12	14	11	6	10	8	5	7
GCTAAGCAACGGATCG	ref_919_upstream	158	133	194	168	126	154	141	161	137	125
GCTAACCTCGATCGCC	ref_919_upstream	45	33	60	42	32	69	36	53	44	53
TACTGCTCGTTTGCTC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTTTTTTTGCCA	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTTCTATCACTGA	ref_919_upstream	25	30	39	28	55	31	40	39	37	22
CTGGTGTGTTGGTTTT	ref_919_upstream	47	39	49	45	33	55	40	52	33	41
CTGTCCTTGAATTGGC	ref_919_upstream	9	24	21	16	26	22	32	12	36	9
TAATTGTGCTCATATA	ref_919_upstream	76	58	89	76	45	86	61	71	54	72
TATAGGACCCTAGAGA	ref_919_upstream	22	20	22	17	7	19	12	20	17	19
ATTTTTCTTGGCGGAG	ref_919_upstream	42	35	60	43	38	60	34	46	36	38
ACGGTGCACTCACGAA	ref_919_upstream	20	17	34	18	12	16	13	25	14	21
TGTCGGGAACGCCTTT	ref_919_upstream	138	78	167	136	96	151	98	122	97	140
CAAATGATAAGCTTCT	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GGTAAAAAGCTGGCTA	ref_919_upstream	103	45	86	86	54	73	55	54	57	74
ATTGGGGGCTTATTCA	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
ATGCAGACCTATGTAC	ref_919_upstream	22	73	25	28	78	15	56	20	71	15
CTTTTTGTCACTGTCT	ref_919_upstream	16	12	17	12	15	12	20	12	17	15
GCATGTTCACCCTCTG	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTCTTAATATTAT	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGGCCTAGTATT	ref_919_upstream	72	84	96	87	64	78	53	78	67	69
ACCAGGACCTCCTATA	ref_919_upstream	26	21	21	21	30	20	32	32	36	24
GGACGTAATGTTTCTT	ref_919_upstream	42	22	40	37	15	31	16	33	28	29
TTAGCCGGTATGATTA	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTCGCAACCTGG	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGGTAATGGTGCC	ref_919_upstream	217	159	256	212	163	232	149	180	154	227
GATGCCGGGTATCGTG	ref_919_upstream	16	13	20	16	16	14	18	15	18	19
GATCCCCTATTACATA	ref_919_upstream	21	17	21	25	13	12	17	20	22	15
CTCTGGGGACGGATGT	ref_919_upstream	9	7	19	11	15	8	14	4	11	9
TCTCGCAGCATTTGTT	ref_919_upstream	73	63	87	94	73	77	62	87	73	60
CTTCAAACTTGGGTAT	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTGTGGTTATGCG	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TATAGTTAGTATCATT	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
AACGTAAGTATCCGTT	ref_919_upstream	22	12	23	19	12	15	12	22	15	22
GTAGGGTTTTGTACTC	ref_919_upstream	124	76	134	139	78	85	85	108	86	116
AATAAACAAAACCCTA	ref_919_upstream	9	9	14	12	10	11	8	18	10	12
GTACGTTTCACAGCGC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
ACCAGACTGCAAGGCA	ref_919_upstream	24	27	26	21	23	22	26	19	21	11
TATTGCCGGAATTCAT	ref_919_upstream	50	34	57	41	39	54	27	55	40	51
ATTATAAGGCCATCTT	ref_919_upstream	104	97	154	125	106	139	120	115	115	92
GGCTGGACTAAATTAT	ref_919_upstream	52	21	74	54	29	39	32	41	26	46
CCCTGTCCGCTATCTT	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTCATAACAGCTC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
AGCGATTGTCTCCCTG	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGCACTAAGTTAG	ref_919_upstream	2	6	2	1	1	2	3	4	2	1
GCGGCATCCGTCGGGT	ref_919_upstream	16	3	13	23	15	27	9	19	5	11
GACCCGATTAAAATCC	ref_919_upstream	64	58	86	78	47	58	75	39	59	60
TCACACTCGTCGGATT	ref_919_upstream	1	6	7	8	3	3	4	5	6	4
TAAATAGCGAGCTGCC	ref_919_upstream	122	80	161	135	86	130	89	121	95	94
AGTTCACCCAACGGGA	ref_919_upstream	32	33	30	26	26	26	23	38	17	27
CAGCCCAGTAGGGGCC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TACCTGAACGATTCCC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTTTCCAATCAAC	ref_919_upstream	13	11	14	8	5	9	4	7	5	14
GCCCATCAATGTTGAT	ref_919_upstream	24	18	30	41	25	18	19	39	22	46
AATTCGGGGTTTCGTT	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCCTGCTACCAGC	ref_919_upstream	13	62	26	17	25	18	53	19	41	13
TCCGGTCGTATTCTGT	ref_919_upstream	7	6	12	4	4	9	15	5	4	8
TTACCCAGCTTAGTCG	ref_919_upstream	3	1	0	5	1	4	4	2	1	1
GAGAAAATCAGAAACC	ref_919_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTATCTGTTTCTT	ref_919_upstream	11	1	4	3	3	9	10	7	8	8
GTCCCCTGAGTTTTAA	ref_919_upstream	32	28	38	35	16	16	24	22	22	27
ATCTAGTTGAAACGTC	ref_919_upstream	7	7	6	4	4	1	4	7	12	3
TTGTGGTTCCTATTTG	ref_919_upstream	13	8	7	13	10	3	2	4	9	7
AAGTTTCCCGGACGAT	ref_919_upstream	22	26	37	23	22	35	29	28	30	21
CTCCTTTCATGCTTTC	ref_919_upstream	43	24	42	28	33	20	39	26	34	26
TCATTATTGTTTCCAC	ref_919_upstream	14	5	11	14	7	18	6	9	9	9
CCCATGGGCCCGTATT	ref_919_upstream	206	142	240	174	144	159	131	167	136	155
GGGTGATTATAAGATT	ref_919_upstream	10	7	23	12	14	16	16	13	14	10
GGTTGGTACGGTGAAC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GATGCCTCAGAGCCAC	alt_5092_RC	29	37	37	40	44	33	38	34	41	36
AGTTTTCAAAATCTGG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
AATCGGCGGATACTTG	alt_5092_RC	166	205	214	177	188	177	195	186	204	159
CTTGTAGTTGAGAAAA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTATTTATTGTC	alt_5092_RC	46	50	76	62	84	56	52	58	82	45
CTTGTGGCACTAGGTG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
TTTCTGTACGGTATCG	alt_5092_RC	10	23	7	7	9	10	17	5	16	9
AATTACGCCCGCCAGT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ACCATGGCACGCTACT	alt_5092_RC	8	14	10	10	4	9	11	6	5	8
AGTTGGGCTACTCTAG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ATGTCACGACAGATAG	alt_5092_RC	44	36	44	54	43	36	56	48	39	37
TTGCCATCTTATATGG	alt_5092_RC	66	53	60	66	57	52	52	56	50	52
GAATTCTCAACCTTTG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ATGAGGAATGATCGCC	alt_5092_RC	3	3	6	5	3	4	7	5	7	5
TTATATTGTTTTAGCT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ATTATTGATGTTTTCA	alt_5092_RC	27	31	44	39	33	30	20	35	26	22
TGGCTTCCCTCCCTCG	alt_5092_RC	67	75	102	63	71	56	51	49	95	61
AATGGCGAGTCAGGAT	alt_5092_RC	5	5	15	8	3	7	6	10	7	11
TCACCTTGTAGACACC	alt_5092_RC	54	56	64	47	52	50	60	60	74	39
CCTGCGTTATCAAAAG	alt_5092_RC	10	10	16	16	16	10	16	10	16	10
TATCGGCAGAATTTTG	alt_5092_RC	1	5	2	2	2	3	1	1	4	1
GAAGATGGTAAGGCAG	alt_5092_RC	262	231	321	231	228	262	293	226	290	220
CACAGCATAATAATTA	alt_5092_RC	56	43	50	35	51	41	52	34	45	39
TCTAGGAGAGTTCTAA	alt_5092_RC	5	12	6	6	12	1	17	4	6	0
AGAATTTTGCGGCTTA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CCTCTGCACCGCTACG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GAGCCATTTTTCACTC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTTACTACGGCG	alt_5092_RC	34	52	52	49	42	41	45	36	52	45
GAAGTATTAGATACTC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
AGGTTAGCAGGACATT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
AGGTCACGGTGGGTTT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GCAATCCCTAACGCGC	alt_5092_RC	12	14	11	10	13	1	11	5	19	8
ATTTCACAGTTGTTAC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CACATATTCTGCCACG	alt_5092_RC	31	29	31	34	17	26	15	26	32	13
CCTGCATCAATGACTT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GTGATCAACATTTCGT	alt_5092_RC	19	5	7	15	7	5	17	3	11	8
CCGGTTTATGGTTTTT	alt_5092_RC	64	72	74	72	87	65	80	76	89	65
GCATCAGCATTTCCCG	alt_5092_RC	8	14	17	9	13	8	15	6	18	7
CTGGCTTAGAGTTCGT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTAATTACTAGC	alt_5092_RC	9	11	13	9	15	13	11	8	11	8
CTCAGTACCCTGGGTG	alt_5092_RC	17	13	12	12	9	9	17	14	13	9
TTCCACGCGCGGACCG	alt_5092_RC	5	9	12	14	5	4	10	9	9	7
GCGCCATTTCTGGTGA	alt_5092_RC	130	150	145	149	151	130	124	120	159	124
CCAACCCGCTCATACC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GTTTATATAATTTGCC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ACAGTACTTGCCTCTA	alt_5092_RC	24	31	43	26	22	22	37	26	49	19
CGGTAGCCCTATCTAT	alt_5092_RC	8	21	11	11	20	7	13	4	19	7
TATCTAATCTTATTAT	alt_5092_RC	52	34	71	57	34	36	57	49	44	51
ACGCATGTGGCTGGAG	alt_5092_RC	70	76	74	78	80	78	79	67	79	70
TTGACATTCGTTGCAT	alt_5092_RC	39	56	59	47	65	47	71	42	73	37
GCAAAGTATTATCTTG	alt_5092_RC	9	9	7	8	11	4	10	7	17	4
AGATCTCTTCTGACCA	alt_5092_RC	12	19	26	20	25	19	22	14	24	12
GAATATAGCGGTGCTC	alt_5092_RC	50	52	48	44	38	41	45	43	49	33
TCCGAGACTAAGAATT	alt_5092_RC	7	5	8	14	14	6	14	6	11	7
TACTTTATCCCGGTGA	alt_5092_RC	2	3	3	1	0	6	2	2	4	4
CATTATGATAGCACGC	alt_5092_RC	43	43	71	35	48	44	62	30	57	40
CTTGTTTCAATTAATC	alt_5092_RC	108	114	142	114	136	115	154	112	139	100
GAGACCTAATATCCGT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
TAGCACACTCACGGCG	alt_5092_RC	0	0	0	0	1	0	2	0	1	0
TCCGACGTCTGGCCAG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GATGGAGTTAATCTAG	alt_5092_RC	2	3	4	1	1	2	2	4	2	0
CTTACCGGCTTGGACT	alt_5092_RC	10	16	12	8	13	6	9	6	10	3
TTATGGAAACGAATAT	alt_5092_RC	11	32	36	18	42	26	50	25	43	16
GGCGACTTCACTGGAC	alt_5092_RC	74	73	93	70	77	72	85	61	83	75
GCCTGGAAATCGTCAA	alt_5092_RC	2	14	4	4	14	6	9	7	16	8
TAGGTATTCAGTGTCC	alt_5092_RC	13	2	19	8	10	5	11	5	3	5
AAGGAGCTCAGTACTT	alt_5092_RC	3	4	7	7	8	5	5	7	7	4
TACTTTTGCCGCTGTC	alt_5092_RC	1	2	1	1	0	1	5	2	2	1
CTTTTGTTAAGTTCGC	alt_5092_RC	6	13	13	10	16	9	10	8	12	6
TTGTTTTTAATTATTG	alt_5092_RC	1	1	0	1	0	0	0	0	0	0
ACGGGGCTTCGTTTTA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
AAGATGTATAAAGCCT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CTCGGCATCAATGCGA	alt_5092_RC	88	93	117	97	92	68	69	75	98	71
CGATGTATCGGCTGGA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
TCACTTAAGGCAAGCG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CTTGGTCAATGTTATT	alt_5092_RC	39	49	48	40	34	38	44	51	61	33
GGAACTACTTTAAGGG	alt_5092_RC	46	40	67	44	56	43	62	49	47	37
TGGGGTCCATAAAGGG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGACTCCATGGA	alt_5092_RC	10	9	9	13	11	12	13	13	10	9
TAATGTTCTCCACCAT	alt_5092_RC	5	9	15	12	7	7	12	7	17	6
TTCAACTTACTACCAT	alt_5092_RC	42	46	58	49	48	50	50	44	49	46
CAGAGAGTGGATCTCG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GTTTATATAATTTGCA	alt_5092_RC	23	22	27	19	22	18	30	15	30	13
ATGATTCGAGCTTGAG	alt_5092_RC	24	38	20	31	28	27	27	28	28	29
TCTTGCCTATAGGTAA	alt_5092_RC	27	48	33	30	52	35	40	26	58	13
CCCCTACATCTTTGAA	alt_5092_RC	24	24	35	20	34	18	34	39	39	23
TCCTTTTTGTGATGAG	alt_5092_RC	47	28	48	52	40	38	34	39	49	41
GTCTTTTTTAGCGAAG	alt_5092_RC	3	7	7	4	5	1	3	8	11	1
ACAACGCGCCGTTAGA	alt_5092_RC	48	81	70	79	76	60	95	48	85	66
GAGCTCTCTGGTTAGA	alt_5092_RC	8	6	17	6	11	11	10	4	8	3
TCGCACACGTATCGGG	alt_5092_RC	32	35	25	29	31	28	34	25	26	36
ACTTGACCCATTTAAC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CCCCGTGTATCTAGCC	alt_5092_RC	14	10	15	11	16	10	11	10	12	13
TTATGGAAAGCCCTAT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GGGATGCTTCTGCTCC	alt_5092_RC	12	9	8	7	5	11	16	15	12	13
AGTATTTTGCGGCTTA	alt_5092_RC	76	90	89	72	118	89	105	80	107	68
TCGAATACTTCAAATA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GCCTAAACCTGGCGAA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CAGCGCATATAGCAAC	alt_5092_RC	25	25	42	43	40	50	19	31	30	30
CCTATAGGCTCGTTCT	alt_5092_RC	329	336	357	290	349	263	378	266	348	245
GGGGTTATAGCTTCAC	alt_5092_RC	10	12	16	11	14	9	17	14	11	12
GCCACGCCGACTTACG	alt_5092_RC	3	7	3	4	6	5	9	2	10	3
GGACCAGGACGTTTTT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
TGGGCTCATTGTAAAC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ATGGGACAGTTTACCG	alt_5092_RC	15	27	25	19	36	24	16	25	23	15
CAGTCTGTCCTATGAC	alt_5092_RC	14	26	36	22	30	18	20	18	33	13
TAGTGCTTTGCCTTCT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
AGCTGCCACCTTGCTG	alt_5092_RC	6	6	8	9	5	9	6	8	10	8
TATCCCATTTCCTGTA	alt_5092_RC	61	63	57	42	69	51	46	59	73	63
GGGCCATTGCTGGAGT	alt_5092_RC	92	117	153	103	122	112	167	108	137	98
TGGTTCGTAGTAATCT	alt_5092_RC	20	32	21	17	24	17	22	20	27	20
GCGTTCAAGCCTCAGA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ATGTCTCCGGCGAACG	alt_5092_RC	9	9	11	9	10	5	21	8	15	7
ATAGACAGTAAGATTT	alt_5092_RC	42	36	46	32	36	26	37	26	49	25
CTAGACGCCTCGTGCA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ACGAGGTCGTTTTCCC	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ATGGACGGGCTGTCCA	alt_5092_RC	15	16	18	14	13	8	16	11	17	12
TTAGTAAATCTACAGT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
TGGCAACTTCTAATCA	alt_5092_RC	85	93	106	80	71	90	67	75	72	71
TAGCTATATTAGCCTT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
CGCCATTTTGATTTGT	alt_5092_RC	9	25	15	11	27	8	26	12	32	13
AATCATCTGGCAGCGT	alt_5092_RC	30	14	27	40	25	23	26	21	29	18
AGCCCATAAATGTCGC	alt_5092_RC	31	43	67	53	40	46	53	37	38	50
GGTTGTCGGTGGTCGG	alt_5092_RC	74	81	92	99	81	76	86	83	108	75
GCCTTCGTCTTGAAGG	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
GCGCAGGGCAGATCAA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
TGTCCATCCAGAGAGC	alt_5092_RC	16	8	16	15	7	9	7	9	13	7
CTTGTCTAGTACACAG	alt_5092_RC	61	130	107	74	135	67	120	43	133	55
CGTGGCCCAGTTCGAG	alt_5092_RC	30	59	60	35	46	50	46	31	53	45
CTTAGTCCATTACTGC	alt_5092_RC	33	23	35	24	42	19	37	24	18	15
ACAACTGCCTCGGTGA	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
AGTGTAATATTACCCA	alt_5092_RC	7	4	5	5	8	7	6	2	10	3
CATAAATTTTCAAATT	alt_5092_RC	27	24	37	34	30	28	24	33	26	21
GATTGACGAATTTTCA	alt_5092_RC	16	21	11	17	15	15	13	13	12	7
ATGCTGCATTCTATAA	alt_5092_RC	176	199	203	175	193	150	229	182	203	153
CTTTGTGCCTTCCTAG	alt_5092_RC	65	76	98	78	93	78	125	78	95	90
CTCGACCAAATTGCCT	alt_5092_RC	0	0	0	0	0	0	0	0	0	0
ACTCAAGTATTCAGTA	alt_5092_RC	12	9	12	10	6	3	14	15	8	9
ATTGCGCCCTAAACTA	alt_5092_RC	48	56	51	50	50	46	41	33	60	31
GGAAGAGACTCATTAA	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGGTTCGCATGT	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
GACAACTCATTCCTGG	ref_3315_fdr	296	190	401	319	201	303	199	285	190	280
ACTTACCCCACGGGGC	ref_3315_fdr	74	179	91	86	172	72	151	82	190	72
ATAATGACAGTGCTCC	ref_3315_fdr	55	34	63	51	35	48	24	43	42	46
CGAAAATAGCGCAGGA	ref_3315_fdr	241	117	281	225	157	226	148	208	153	195
CGGAATAACAGATTTG	ref_3315_fdr	7	5	5	3	1	7	9	5	3	10
ATTGCTCGAGTGATCA	ref_3315_fdr	82	58	87	72	36	69	52	61	57	45
CAGTACGGGAAATCTG	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
TTGTAAGTAGGCAAAA	ref_3315_fdr	45	27	35	28	23	28	26	38	29	22
CATTTTATCCTTCAGT	ref_3315_fdr	55	63	86	87	66	64	61	62	70	66
CCTTTGACCACGGCAC	ref_3315_fdr	58	68	88	70	67	50	88	48	78	44
AGGATCTTTATATACT	ref_3315_fdr	60	39	71	49	23	51	33	52	35	42
CTTTTGACTAAGGTTC	ref_3315_fdr	10	9	10	8	5	10	5	11	7	14
TCTCGTGGACTTGATC	ref_3315_fdr	15	11	14	13	7	8	4	12	9	10
TTAAAGAGCTGTTTAC	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
CGCACAGAGTGTAACC	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
ACGGTGGCTTGCACCT	ref_3315_fdr	137	90	168	143	84	135	119	129	99	120
CCCGCAGTACTGGTTT	ref_3315_fdr	49	24	48	49	28	47	20	47	34	26
AATTTCGAGAAGCAGC	ref_3315_fdr	68	51	101	90	45	77	53	72	47	74
TTCTCTAACATTATTT	ref_3315_fdr	27	14	15	30	18	18	14	26	10	17
TGGCCGCTTAGGCCGT	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
GATCTTCACACTTTCC	ref_3315_fdr	33	39	33	41	40	29	51	39	43	24
TCATTGGTATAAAGCC	ref_3315_fdr	62	58	80	54	70	49	49	53	44	64
GTAATATTGCCTGAAT	ref_3315_fdr	66	44	51	44	28	46	34	44	24	39
TTTGCATACAGTTTTA	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
CTGTACAGTCTGCCCA	ref_3315_fdr	3	11	6	8	6	13	5	13	4	12
ACTCTAATTTAGGGGA	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
CCAGATTCCTGGAAGC	ref_3315_fdr	32	24	33	25	27	13	25	28	22	27
ACATTGTACTCACATA	ref_3315_fdr	21	10	16	19	21	22	21	25	19	20
CGTTTAACCAGCTTTG	ref_3315_fdr	46	36	67	50	45	36	38	51	43	38
CGAAAAGTTGGGTAGA	ref_3315_fdr	36	36	61	47	25	42	26	32	31	25
AAAGAACATGAGTCGG	ref_3315_fdr	178	159	231	189	134	192	113	156	114	182
GGGTTCTTAAGATTAT	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
ATCAAGTTCAGATGGG	ref_3315_fdr	96	64	132	93	70	104	71	106	82	94
GTGCAATGAGTCCCAC	ref_3315_fdr	116	73	124	114	92	107	54	99	91	104
CCCCCTATGCCAAATG	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
GGTATGGGCCCCGGTC	ref_3315_fdr	57	44	63	70	50	48	53	73	42	63
CTAGAGTAATCCATAT	ref_3315_fdr	97	75	114	95	76	105	64	103	81	70
TCCTGTAGTCTTTGCT	ref_3315_fdr	678	558	766	682	479	627	523	596	537	559
GACTTAAACGTCGAGA	ref_3315_fdr	19	14	27	27	22	20	17	28	14	16
CATTACAGGTTCCCTT	alt_3315_fdr	518	290	644	516	309	452	318	458	356	443
GGCATTGGGATTTCCC	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
TACTGTCATATGAGCG	ref_3315_fdr	98	61	115	98	81	74	65	81	88	90
AGTCAACTTGTTTCAA	ref_3315_fdr	96	93	144	116	131	123	92	113	102	74
GCCCCCGTAACACATC	ref_3315_fdr	8	8	1	5	13	5	9	1	10	9
AGTGTGATGCTCGATC	ref_3315_fdr	53	66	63	53	40	52	58	61	40	44
TGCTAACGCTTTATAG	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTGGCCAAAGGTT	ref_3315_fdr	477	426	569	490	400	466	399	390	436	427
AAAACACTTTTATACG	ref_3315_fdr	19	5	17	12	8	16	8	10	19	5
TGTTTTTGTCAGCGAT	alt_3315_fdr	144	109	228	160	112	165	105	174	140	159
CGTTAGTCGTTCTGGT	ref_3315_fdr	20	10	23	15	9	6	12	7	11	11
TCACATGTATTCATTT	ref_3315_fdr	49	21	55	47	35	41	34	54	32	53
GTGTAAGCGATACGCT	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCACTGCCCTTAA	ref_3315_fdr	59	29	56	64	36	40	17	43	48	49
TATGAACCGGCAGAGC	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
TCAGTGGGAATGAACT	ref_3315_fdr	148	97	184	169	113	132	125	147	108	128
GAGGGACTCACCGGGC	ref_3315_fdr	38	37	46	36	30	45	31	34	23	23
AGTTCATTCTATTGGT	ref_3315_fdr	88	78	112	109	72	89	64	90	68	105
GGAAGGCACTCCCCTT	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
ACACAAGTTTGTCGAT	ref_3315_fdr	7	1	5	4	9	1	5	4	5	1
CCCTCCAATCATCTTT	ref_3315_fdr	25	21	22	31	33	28	16	33	33	24
CAGCATGTCAGACGAA	ref_3315_fdr	2	2	2	11	0	1	3	9	6	9
GCGACAACTTCGACAT	ref_3315_fdr	68	44	100	75	54	62	58	73	66	69
TCCTACTCTAGCGACT	ref_3315_fdr	11	6	27	11	17	5	4	10	15	16
CTAGTTTTTGTGTCTA	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTTCCATGCAGGC	ref_3315_fdr	190	122	253	245	115	219	118	184	142	189
CCAAGGTTTCCTGCAG	ref_3315_fdr	6	8	6	7	6	7	8	7	6	8
GAGTGCAGTGCTGAGC	ref_3315_fdr	15	4	15	10	7	10	9	13	10	9
ACGTGACGTACAGAGG	ref_3315_fdr	149	84	179	143	90	132	88	132	106	117
GTCTATACGTCGGCCT	ref_3315_fdr	30	7	31	28	18	26	13	29	16	32
CAATAATTACTTCTTT	ref_3315_fdr	123	67	152	99	54	87	84	105	72	107
GGTTGACACATACCAG	ref_3315_fdr	36	31	50	43	28	52	29	43	20	41
TTTGCGTTTTCTTGCA	ref_3315_fdr	100	51	103	92	58	76	53	62	66	64
TTCATAGCGACGGGCA	ref_3315_fdr	30	18	46	36	15	32	25	26	20	23
GGTCAGAGTTTTCTTA	ref_3315_fdr	6	17	5	4	19	2	17	3	23	5
TGCATGTGCCAGTTAA	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
GACAGCCCCTCGTGGC	alt_3315_fdr	109	74	127	87	77	99	103	80	82	75
CTATGAAACCTGCTAT	ref_3315_fdr	164	97	160	137	91	134	111	125	99	132
TGTGGTCGACAACGCC	ref_3315_fdr	51	53	77	54	51	36	54	80	40	46
TACGGCGGCTACCCGC	alt_3315_fdr	259	232	344	285	267	304	259	280	275	228
CAGTGCCGTTCGAAAT	ref_3315_fdr	84	52	86	67	62	72	43	52	53	53
GTCTCCAGTATTGAAG	ref_3315_fdr	20	17	16	17	15	12	8	24	8	20
ATCTCCGAACTCAAAA	ref_3315_fdr	76	40	101	60	42	67	52	54	49	61
AATATCAATCCACTGG	ref_3315_fdr	13	13	21	26	11	27	10	29	17	19
GAATTTCTCAAGGCAT	ref_3315_fdr	22	14	32	21	16	18	17	23	21	26
TAGATAGAGTATTACG	ref_3315_fdr	72	42	65	55	30	51	33	39	41	46
AGATATGTTGCTTGCT	alt_3315_fdr	108	42	113	95	42	93	56	93	72	92
CACTCGATCTCGCCCG	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGTTTAGCTTGTT	ref_3315_fdr	4	2	2	1	0	0	1	2	4	2
TCCTTTATGCGCATCT	ref_3315_fdr	126	76	134	106	66	110	90	122	115	88
GGGATACCCGGCCAAC	ref_3315_fdr	180	109	229	152	102	183	126	167	121	164
ACCCACTGGTCTATTG	ref_3315_fdr	122	105	124	111	122	114	104	114	90	110
AATGCCATTTAAACGT	ref_3315_fdr	177	148	206	226	127	177	151	184	143	165
CTAAATAAGTCCCTGG	ref_3315_fdr	92	56	93	117	53	62	63	95	74	78
AAGGGATGTGGCTAGC	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
AGCGGAGTAACCCATG	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
GAAAGAACGGAGTGCG	ref_3315_fdr	236	161	300	278	173	221	179	261	192	211
AGTGTGAAACTTGATA	ref_3315_fdr	0	0	0	0	0	0	0	0	0	0
TCACAATTTGCTCTCC	ref_3315_fdr	20	17	16	26	11	11	13	13	8	25
GTCACTTATTCAAGAC	ref_3315_fdr	8	1	5	10	5	9	13	6	4	9
TGGCTTCGACGGGGCG	ref_3315_fdr	38	20	20	27	21	23	27	26	21	19
TATGACCCGGCAGAGC	ref_3315_fdr	78	30	73	52	45	59	33	72	35	70
TATCAGTTCAGTTAAT	ref_3315_fdr	142	94	173	134	86	112	88	125	111	118
AGGCTGGTGTGAGACA	ref_3315_fdr	106	52	114	134	86	101	67	71	88	79
GATTAGGTAAGTCTTT	ref_3315_fdr	28	22	37	40	28	23	20	37	36	31
AGTACCATTGATGCAG	ref_3315_fdr	227	140	232	211	133	222	166	187	169	164
TATGCAGCGCTGTTGA	ref_3315_fdr	32	21	31	40	23	25	17	28	20	20
GAGGAGTATCAATGCT	ref_3315_fdr	60	63	82	71	42	74	69	64	47	54
AAGGTGCATTCTGCAT	ref_3315_fdr	47	43	60	65	41	40	47	44	58	45
GCAGGTCATCACATAT	ref_3315_fdr	430	380	506	438	349	363	359	362	362	323
TTTTAACTTCTTTCCA	ref_3315_fdr	62	41	82	78	44	72	49	71	67	72
ATTGTTTGCTACATCA	ref_3315_fdr	81	51	82	56	37	79	47	74	68	56
TGCATGCACAAAAAAG	ref_3315_fdr	40	26	42	38	27	50	21	24	26	36
TGGCTTGTCCAACGCC	ref_3315_fdr	41	26	49	38	33	29	31	45	32	35
CGTTCGTCCTGGTTTT	ref_3315_fdr	87	52	131	98	75	106	67	101	62	112
TAAGAACCGATACGTT	ref_3315_fdr	112	86	106	106	75	84	67	85	101	82
ATCTTTGAATCTCCGC	ref_3315_fdr	49	37	77	61	39	52	44	48	42	50
CTGCGGAGGCATATAC	ref_5201_fdr	20	23	30	26	25	21	27	18	28	20
TAGTTACATGACCGGA	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
ACCACCACTCGATTGA	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
GAATGGGCAGATTCTA	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGCATGGCCCTTT	ref_5201_fdr	41	22	62	30	31	34	31	35	32	40
TGGGTTAGGGCCAACC	alt_5201_fdr	29	39	34	49	46	30	37	44	35	29
ACAGTGCTTTGCTCAT	ref_5201_fdr	58	70	54	61	71	43	68	38	66	36
AGAGAACATACAACCT	alt_5201_fdr	23	21	20	22	20	27	24	20	17	13
TTCGGTTTTTCGTATC	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGAACTTTAGCTG	alt_5201_fdr	18	27	20	17	21	13	20	30	17	10
GCGTGTTAAAGCGTGC	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCCTCAACTCCTG	ref_5201_fdr	18	52	15	17	28	13	39	12	35	17
ACCCAAGCCAATTACC	alt_5201_fdr	33	30	22	30	41	31	28	23	34	24
AAGATTTGCGCGCAAA	alt_5201_fdr	21	21	31	23	15	18	16	18	19	20
CGTTCACATACCGTTT	alt_5201_fdr	83	90	114	110	92	85	86	92	94	88
GTTTGCACTCGCCCGC	alt_5201_fdr	10	14	10	13	16	4	15	2	20	8
TCTGGTCCATTTATTT	alt_5201_fdr	33	39	46	40	52	29	44	37	40	32
TGTTCAAGATTTTCTT	alt_5201_fdr	90	90	99	108	81	103	83	83	117	76
TCAGTATCTTTAATGC	alt_5201_fdr	9	5	9	14	13	9	9	11	12	11
GATGCTTTATCCGAAC	alt_5201_fdr	46	52	55	42	50	48	73	46	52	52
TTATAGCGTTTTCCAA	alt_5201_fdr	7	15	14	18	11	13	10	8	9	9
TCCCCTTCTAGGCTAC	alt_5201_fdr	5	7	7	6	15	12	8	11	11	3
ATATGGTTCACGGTAG	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
ACGATTCGTTGATATG	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGATAACCGTGCA	alt_5201_fdr	1	8	1	1	11	2	9	0	14	0
GTGGACATAGGTTCAT	alt_5201_fdr	10	12	14	5	10	8	9	7	4	9
TTTCGGTCTGTAGATG	alt_5201_fdr	19	25	20	25	17	13	23	13	24	10
TTCGGTTTGGGTTTTT	alt_5201_fdr	11	6	10	3	4	3	7	5	5	7
CATTTAAGTTTGTTCA	alt_5201_fdr	92	106	133	92	96	100	114	68	85	79
GCATGAATAGAAGTGT	alt_5201_fdr	4	3	3	7	6	4	4	5	7	0
TTGGGCTTGTTGGCTC	alt_5201_fdr	191	163	195	180	183	178	175	165	183	152
GTAAGCGTCTAATCAG	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGCCTCGTTGCC	alt_5201_fdr	66	90	94	77	96	66	112	75	101	65
ATTAACCAGTAACAGG	alt_5201_fdr	31	47	41	46	40	42	37	48	34	21
TGTTTTCATTTCAAGC	alt_5201_fdr	19	13	29	35	19	23	27	16	25	13
ATCTGCGGCAGGTCAC	alt_5201_fdr	8	9	17	13	14	8	13	16	16	8
CTGTTTATATATGCGC	alt_5201_fdr	17	11	6	14	15	6	15	6	11	10
CCGTGGTGCAATCGTC	alt_5201_fdr	10	9	12	11	5	6	12	7	10	9
TGCATTACAACTTGGC	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
GGAATCCGACGTTTAC	alt_5201_fdr	40	22	56	46	36	32	38	44	29	41
TTCCCGGTTGTTGCCA	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
GCCAATTTCCCGTGTC	alt_5201_fdr	140	388	174	168	464	103	456	140	480	108
GAAACCGAGCCAGATC	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGTCAGGTTAATA	alt_5201_fdr	74	71	91	72	50	70	66	75	63	47
CGTACCGGAGTAAGCC	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGGCTGTTGCTGG	alt_5201_fdr	135	122	176	146	134	130	148	133	167	97
GCATGCATTACCCGCT	alt_5201_fdr	32	32	47	31	29	22	33	43	23	27
CGACCCAGAAAGAATT	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
TCGCACCCCCTGATCT	alt_5201_fdr	32	29	32	25	22	26	25	19	20	22
TGTGTGAACATAGGAG	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
TGAACCTATTCTTGAC	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCAGCTTTCAGCC	alt_5201_fdr	252	258	329	283	258	246	266	223	273	214
ACGCAGGCAGCGGCTA	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
CTCAAATTCTCTTTGT	alt_5201_fdr	2	5	5	5	4	1	6	1	6	1
GGTGATGAACGGTCAA	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
ATCAAAGTGCAGAATC	alt_5201_fdr	14	24	12	28	15	20	17	18	29	11
CGGGGGTGAGCGGAGT	alt_5201_fdr	13	23	21	17	15	12	15	18	22	9
TGCTGCCCGCTCAGTA	alt_5201_fdr	4	1	7	2	3	4	5	2	1	0
CCTCCGGTTAGCCACT	alt_5201_fdr	25	21	33	25	23	15	28	20	17	20
TGTGTGGCCGTACATT	alt_5201_fdr	57	87	86	69	60	57	72	54	57	55
CTTTAATCCCACACCA	alt_5201_fdr	95	134	148	120	123	87	115	112	149	82
GGAACGCCTTGCAAGT	alt_5201_fdr	36	49	51	45	42	54	53	39	51	35
CAGCGACGAATAAGTT	ref_5201_fdr	21	28	16	14	41	12	33	16	37	9
GCAAAGAACTTGGTAA	alt_5201_fdr	1	2	5	4	6	7	5	3	4	3
TGGACTGCACTTTGGC	alt_5201_fdr	43	56	58	59	52	40	51	59	52	39
CCCAGTGCCATGAATG	alt_5201_fdr	48	45	57	47	58	40	64	41	64	41
CCTAATGTCGGTAACC	alt_5201_fdr	18	13	22	18	9	6	17	15	13	21
TGTCATTATTGGACGG	alt_5201_fdr	68	91	83	80	68	78	74	78	79	53
AAACGCGCTTGGTTTC	alt_5201_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCTGCTAAGACAA	alt_5201_fdr	54	53	60	67	43	64	53	59	60	41
TCGTCCCTTCACTTCT	alt_5201_fdr	35	26	51	46	33	25	35	34	32	38
CTTGAAGAAAGTCTTG	alt_5201_fdr	34	63	70	52	50	51	45	53	48	47
CTAACATTTCTGTAGC	alt_5201_fdr	78	49	70	94	79	78	62	61	69	64
GGTCTCTGCAGCAATT	ref_5743_new	274	182	314	294	196	192	215	252	172	228
TTCGTTCCTGTTCGCG	ref_5743_new	52	38	60	44	29	40	37	45	43	41
ACATTTTTCAGTTGTA	ref_5743_new	225	141	237	211	134	211	125	202	156	160
AAATCCCGGTTCGTCC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
ATTCCGGCGTGTTTCT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TATAAAGTCCTGGTTC	ref_5743_new	152	94	186	132	105	135	98	129	130	111
CTTTTGTATTTCCTGT	ref_5743_new	37	16	39	40	21	36	22	33	28	15
AGTATCCTGCTCCAGT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
ATTCTTAGGTCCTTGT	ref_5743_new	13	6	23	23	8	12	10	28	15	15
AGTAAAGTTGTTGGTA	ref_5743_new	0	0	0	0	0	0	0	0	0	0
GTATAGTCCGCAGGTG	ref_5743_new	140	103	135	146	97	111	114	137	92	114
TTATAAACCTCTTGTC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TGTGCATGCGGGTGGC	ref_5743_new	21	18	38	46	13	36	22	40	27	33
TAAGGCTCTTGGTGAG	ref_5743_new	36	29	59	36	32	42	29	38	41	39
TGGTCCTTGGTCCACT	ref_5743_new	191	113	212	164	159	158	162	142	146	183
CATGTCTCTTCATGTT	ref_5743_new	34	30	51	56	34	39	26	44	22	41
AAAGAGGGGTCCTTAC	ref_5743_new	66	105	104	71	92	69	89	80	116	62
GTTTGGCAGCGACTTT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
GAGAATGGGGGGTCAT	ref_5743_new	51	25	56	49	31	39	43	40	43	41
TTGGGGTTGCGGTGTT	ref_5743_new	38	31	54	51	30	37	37	44	21	38
GTTCTCTTATAAACTA	ref_5743_new	20	22	45	29	24	27	25	20	23	26
CCAATATACAACGACC	ref_5743_new	3	1	2	1	3	2	2	1	2	2
GCATCTTATTGTCTAT	ref_5743_new	89	60	113	82	78	68	70	72	67	76
CGTATGCACCATGTCA	ref_5743_new	20	15	32	48	25	22	20	25	32	26
GGTCGATGCAAGGCAC	ref_5743_new	5	4	7	4	4	5	8	8	8	4
AGTGAGTTCAGAGAGC	ref_5743_new	50	61	83	71	51	59	58	54	59	64
CGTTATGACTGGCAGT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TATCTTATGGTTTGGG	ref_5743_new	19	8	20	9	6	9	4	16	11	11
AGCCCCGTCATGGCTT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
ATCGTTCCGGCACCGG	ref_5743_new	37	33	46	35	37	34	20	31	26	32
CCCCTCCGTGCCGTTG	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TGACTTCCTCTCGTCT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
GCGGTGTATTCTTCTG	ref_5743_new	15	12	26	11	11	13	12	13	16	8
CCCTGTTAGATTAGTT	ref_5743_new	101	72	102	104	67	105	74	99	72	84
CACAAGTTGATAACCA	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TCACTATGTAATTATC	ref_5743_new	36	34	53	51	42	46	38	35	43	31
GCCTTGCTCTTGGCAC	ref_5743_new	20	10	9	13	9	10	8	12	11	10
TTTGTCTATCCCTTCC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TATCTCAGGCTATGTT	ref_5743_new	60	39	70	78	44	49	41	54	35	54
TGCTATCGTTCCACGC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
CGTTTAAGTGATTGAA	ref_5743_new	45	20	44	31	34	29	28	48	38	36
TGAATTGCATCGCCGT	ref_5743_new	21	32	57	35	24	28	25	38	22	24
AGAATGCGTCATCTTT	ref_5743_new	61	39	53	49	28	39	22	62	26	43
GTAGTAAAAATCAACC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
GAATCGCACGCAACGA	ref_5743_new	14	9	16	12	3	10	10	14	13	11
AGTCCAGTCTTCTTTT	ref_5743_new	32	18	23	36	22	25	18	20	31	28
ACCCGCGGCGGCTCAC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
CACCTTTAGCCCGTTT	ref_5743_new	128	73	135	117	81	96	92	93	90	86
ATCTACCGTATGGTTG	ref_5743_new	0	0	0	0	0	0	0	0	0	0
AAAGCTTTGCAGAGTA	ref_5743_new	0	0	0	0	0	0	0	0	0	0
GGAGCTCTTGATCGTT	ref_5743_new	74	53	109	77	56	72	70	83	66	58
ATTTGCGGTGTTACCT	ref_5743_new	221	120	258	219	129	206	160	189	142	170
TCTCCATTCCTTGTAT	ref_5743_new	17	13	12	16	4	15	6	10	10	14
TTCGTTCGACCTTGTG	ref_5743_new	12	9	21	9	11	14	10	11	20	13
TCGCTGCTTCACCTAC	ref_5743_new	62	37	69	66	24	41	51	29	69	48
TGTTGAACGTTTTTAA	ref_5743_new	34	31	27	35	37	27	31	27	34	23
TGTGGAGTCCTGTCGA	ref_5743_new	4	6	7	5	5	5	10	12	6	5
AGTTTGTTCGCTTTTT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
CCCTATGCGGGGTTTT	ref_5743_new	32	27	38	48	23	23	38	18	24	18
GCTGTTATTCACGTAA	ref_5743_new	13	3	21	18	12	19	11	25	11	16
GGAACTAGCGTTTTTT	ref_5743_new	81	61	95	93	56	88	62	91	51	80
CATAACCGTCATAACT	ref_5743_new	61	53	70	61	29	46	51	53	52	55
TCGGTTAGGGCTATTA	ref_5743_new	128	87	157	132	92	136	81	130	92	117
TCGGAAATTGTGTCAT	ref_5743_new	88	58	99	82	78	88	58	73	90	76
GTAGCGTGTATGCAGG	ref_5743_new	25	14	17	21	16	24	24	24	23	20
ACCTATAGCATGCTAG	ref_5743_new	68	48	85	59	55	68	47	62	81	48
GTCTTCTGCTATCGTC	ref_5743_new	52	35	67	50	54	51	57	64	48	35
GCGAGCACGGTGACGT	ref_5743_new	164	124	222	191	128	174	162	147	146	140
ACTCTGATTCATGTTA	ref_5743_new	130	86	148	142	86	101	103	105	85	98
TCCACTATAAGTTTTA	ref_5743_new	62	32	80	45	32	42	27	42	32	46
AATATTCAAATAACTG	ref_5743_new	233	165	245	221	142	201	137	199	161	197
TCGTTAATTATTGTCC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
GTGGGACACATTCGAT	ref_5743_new	54	39	68	63	40	42	46	50	44	46
TTCGGCCTAGAGTATG	ref_5743_new	6	12	17	8	16	18	19	14	12	14
ATCCGAACGTAACCTG	ref_5743_new	59	52	91	83	71	56	52	78	66	64
TCGATTGACCGATCAG	ref_5743_new	154	92	168	172	99	133	123	134	90	139
CACGGCGATCAGATTT	ref_5743_new	61	31	70	62	35	64	33	64	54	52
ATTGCGTTTTCCATAT	ref_5743_new	0	0	0	0	0	0	0	0	0	0
TGTACAGCAGAAAAAC	ref_5743_new	23	17	39	21	20	22	20	18	26	18
CTGTGTACCTTGGACC	ref_5743_new	18	12	17	13	13	9	9	13	20	10
CTTCGCATCTAGATGC	ref_5743_new	0	0	0	0	0	0	0	0	0	0
CAAAATCACGTTATGA	ref_5743_new	64	41	93	76	44	74	43	37	36	54
TGATCCTTATAGTGTA	ref_5743_new	22	19	33	37	24	32	24	29	16	21
ATAGACTACGTCAGTC	ref_5743_new	128	94	156	152	88	116	87	115	89	114
TCACTCATAACTGGAG	ref_5743_new	42	35	40	32	45	41	40	39	42	26
AATTATCGAGCCTACT	ref_263_missing	14	21	29	20	22	10	28	16	26	12
TGTGGTGGAGGTACTT	ref_263_missing	26	26	23	19	23	14	23	11	29	14
TGATCGCTTCACTGGC	ref_263_missing	23	35	26	22	34	30	40	31	43	11
GCATCCAGTAATTATG	ref_263_missing	0	0	0	0	0	0	0	0	0	0
TCGCTGGCCACGCTCG	alt_263_missing	117	171	152	124	178	137	171	118	203	116
CCTCCGTACATACTGT	ref_263_missing	0	0	0	0	0	0	0	0	0	0
CGGAAAAGTTAATTGG	ref_263_missing	7	13	11	5	13	11	12	5	19	10
GTGCAAATCACTCAAA	ref_263_missing	0	0	0	0	0	0	0	0	0	0
CCCCAACCATTCTTAT	ref_263_missing	33	50	62	50	61	39	59	26	63	38
ATCGACATAATAAATT	ref_263_missing	15	24	14	8	17	9	20	16	13	14
TTGGTTTATCGATTCA	ref_263_missing	3	5	2	4	5	4	3	4	7	8
GTATTACTGGAGGTAC	ref_263_missing	41	55	25	19	37	13	48	33	48	24
TTTACCATGTAGGTTT	ref_263_missing	19	28	23	18	29	16	30	17	36	17
GCACATAATACCACGT	ref_3933_upstream	1	0	0	0	0	0	0	0	0	0
GATCACGCCCCGAGGC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCGGCTGCAATCA	ref_3933_upstream	35	39	34	30	51	31	51	34	44	30
GGACAACAGTTAGGTA	ref_3933_upstream	4	11	8	8	12	12	6	4	10	6
CGTCGGTTTGCGTCAC	ref_3933_upstream	23	37	21	18	35	15	37	16	31	16
CTGAAATAGGGTGGTG	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCAACAGGCGGTC	ref_3933_upstream	2	4	1	0	4	7	3	3	3	2
TTCGTTCAAATTAGTG	ref_3933_upstream	13	21	17	23	21	6	17	7	15	7
GGGCAGGTTTCATTTT	ref_3933_upstream	14	17	19	16	24	15	14	17	20	18
ACCTCGCTTCATGGTG	ref_3933_upstream	13	24	21	13	28	10	18	23	29	19
CCAATACTCTTTAATC	ref_3933_upstream	1	1	0	0	0	0	1	0	0	1
TCCGGACCTTGGTCGC	ref_3933_upstream	24	30	19	14	33	20	35	25	44	16
TTCCGGACGGAGTCTT	ref_3933_upstream	7	5	2	8	8	12	6	6	12	10
TCCTATTGGTCAACGT	ref_3933_upstream	15	62	22	28	65	12	55	18	59	15
ACGGTCTTATGTCTTA	ref_3933_upstream	15	13	15	8	13	8	12	10	11	9
CAATTTTAATTTTATC	ref_3933_upstream	8	10	15	13	10	6	8	8	11	10
CTCGCCATGAACGTAC	ref_3933_upstream	27	19	25	15	38	21	33	17	17	30
CACTCCCTTCGTTTCT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TACACTGTCCTATCTG	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTTGATGATTCTT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GATTACCGGGTAACTT	ref_3933_upstream	9	15	14	10	11	7	16	4	15	13
CTTGTACATACTTCTG	ref_3933_upstream	23	16	17	19	28	13	23	9	18	12
CATGGGCAACTTCGTA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGTAGGCTGTGGG	ref_3933_upstream	16	27	12	5	25	9	17	16	27	14
GTATAGGGATAAGTGA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCGTATCGAAATA	ref_3933_upstream	11	31	7	8	38	14	33	6	27	12
AAGTTGCCCAAAGGCA	ref_3933_upstream	77	88	104	81	93	74	101	85	93	75
CCGAGTTCTTGCGGGT	ref_3933_upstream	99	115	127	98	107	74	114	81	146	79
TTTCGATCTCGAGTAG	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTAGTAATTATCT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TGTACTTCGAGCTCTG	ref_3933_upstream	13	26	25	16	23	17	36	12	26	17
CTAGAGGTTTAAGGTG	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGTATAAACTGCG	ref_3933_upstream	12	14	17	19	22	14	18	8	17	4
TCCTGCGCTTAGCGTT	ref_3933_upstream	4	13	4	8	5	2	12	6	10	5
TGTTATAGATTTTCGA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGGATTTGATATAGAC	ref_3933_upstream	157	240	205	170	204	190	231	172	247	145
GTGTACATCTTTTGAT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTACGTTACCCCT	ref_3933_upstream	12	20	20	18	18	6	21	11	26	10
GTTTATGCTAATGAAC	ref_3933_upstream	1	5	3	5	6	6	4	3	8	3
GGAAGCTTATATGTTC	ref_3933_upstream	51	59	50	51	60	57	53	39	83	55
TGACCAGGATTATAGA	ref_3933_upstream	12	27	28	12	28	20	23	17	23	17
TTTTTAAAAAGCTCCG	ref_3933_upstream	7	7	3	3	6	1	5	3	5	1
ATCGTCACCCCGGTTA	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCAAGGTCACTTG	ref_3933_upstream	37	42	40	43	45	22	48	28	60	25
TTGACTGGTCTTAACC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TTTACCGGTTGCTGTC	alt_3933_upstream	25	58	34	25	53	40	49	35	51	18
GATGCAACCACGATTA	ref_3933_upstream	34	22	32	27	33	14	35	18	36	21
TGTTTTGACGGTGGTT	ref_3933_upstream	27	23	34	25	31	31	41	33	39	33
GTGATCCGTTGTTCGT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
CATTTATGTCCGGGCC	ref_3933_upstream	37	48	24	22	37	24	29	30	40	24
CTGGAGGACATATAGC	ref_3933_upstream	16	32	39	32	24	20	33	23	33	24
TCGTCTTAGTGATCAT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TAAACGCCTCCTTCTC	ref_3933_upstream	7	10	8	4	11	2	3	6	12	7
TTACGTCCATTGTCCC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGCTCCTCACGGC	ref_3933_upstream	3	3	0	1	4	1	0	2	3	0
GGAATTATTTCGCCCT	ref_3933_upstream	22	29	21	35	20	19	21	31	40	19
GTTCGTAAAAGTTTTA	ref_3933_upstream	19	36	27	19	21	29	46	18	27	25
AGATCCGCTTCGATAT	ref_3933_upstream	14	13	15	10	16	10	12	12	11	6
AGTCTAGGACAAACCA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGTGTATCCGTATATT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TCACAAGCTGCGGATC	ref_3933_upstream	51	79	65	62	90	60	64	37	83	34
TAGCCGGTCTGGGCCC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
AACAATAGATCCCATA	ref_3933_upstream	50	66	76	48	72	58	74	58	89	43
GGGCCTATGATTCCAA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
CACTTGCGTACGAACC	ref_3933_upstream	25	41	21	32	32	19	35	33	22	31
TTTCAGACCGTTTTGG	ref_3933_upstream	19	34	19	19	19	21	47	9	38	19
CTGATCGCTCCTTACC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGTGGGTGCCTCT	ref_3933_upstream	9	13	21	6	14	20	18	21	22	9
ACATAGCCCGTGCTCG	ref_3933_upstream	43	56	59	54	73	53	54	51	85	46
TACGATATTGGCTTGT	ref_3933_upstream	13	28	13	20	28	11	23	22	20	7
ACAGTCAAATTCGCGT	ref_3933_upstream	8	8	6	6	7	8	9	9	13	8
GGCCGTTTGTATTTGT	ref_3933_upstream	32	33	21	21	31	22	20	35	29	20
TGAAAAGAGAGCTCGG	ref_3933_upstream	51	66	57	46	60	42	45	28	60	40
GTCGGAATCCAGAACT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGTCGCTCCAATT	ref_3933_upstream	7	7	4	12	8	9	11	12	4	8
GCGGTATAACCCTTTA	ref_3933_upstream	15	24	10	8	25	12	22	12	21	8
GTGTGTAATATTCGCG	ref_3933_upstream	21	19	13	13	26	11	29	16	24	13
TCAGGAGAGGCTCACT	ref_3933_upstream	44	55	57	41	55	37	61	48	63	45
TTGTGCTTGGTAGCTC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TTGATGGTCGGCTTCG	ref_3933_upstream	74	85	109	68	84	93	112	67	99	70
CAAATTTTCCGCTGAC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TATAATCATAACGATG	ref_3933_upstream	18	18	21	16	20	10	24	13	30	13
TCGAGCGCCCTTCAAG	alt_3933_upstream	62	95	90	57	86	54	86	70	100	60
TTGCTAATGTCATTTT	ref_3933_upstream	32	49	42	30	38	36	35	27	26	28
GTGCCTATGATCCTCA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
CTTCACAGCTTTTATG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CCTCAGCTACGCACGG	ref_3933_upstream	23	23	29	23	44	16	33	19	39	21
CTTCTAGTATACATCT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGATGTGCTATTGACA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
ACCTGCCCGTTCCGTG	ref_3933_upstream	8	19	10	11	15	19	18	11	19	7
TCCTGCTATTAACTTA	ref_3933_upstream	14	20	12	12	10	11	12	3	18	10
ATACGTGTGGCGGCCT	ref_3933_upstream	7	4	6	5	4	4	5	9	9	9
ACGCGTGCTCGTTTTT	alt_3933_upstream	6	2	6	8	4	4	2	3	13	5
ACATTGGCTTGCGTCC	ref_3933_upstream	12	8	15	23	8	15	17	11	16	6
GTTTTACGCTATGGTT	ref_3933_upstream	3	11	12	10	10	3	15	4	10	1
AATCTCTAATTTTTTA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
AATCCCTCCTGCCCAG	ref_3933_upstream	61	68	79	57	62	45	65	51	56	57
AGCACTACGTGTCCGA	ref_3933_upstream	9	13	12	6	11	10	5	4	8	10
TACTTGCTCATATAAC	ref_3933_upstream	13	20	8	11	15	12	9	16	22	11
GCTATGCGTTGTGACT	ref_3933_upstream	5	8	12	6	9	8	6	7	11	7
CTCTGCGAATTTTACT	ref_3933_upstream	5	12	8	5	9	7	7	10	12	4
ATCTCTATCATATATA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
CAACTATACGAGGTCT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGGATTTGATATAGCC	ref_3933_upstream	0	0	0	1	2	0	0	0	0	0
CCGCGCGTGGAATATT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
AAAGATTTCACTAGAT	ref_3933_upstream	44	51	47	39	48	39	43	45	65	33
TACTGTGTCGAGTCCC	ref_3933_upstream	32	44	43	31	47	27	39	36	42	43
CAGGTTTTAGATATGC	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGTATGAATGTCCAAA	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATCGTTCTTTTG	ref_3933_upstream	11	18	19	13	20	6	20	16	14	19
CCTTTCCTAGCATAAT	ref_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCACGTCGTCCTCCAC	ref_3933_upstream	68	83	106	70	78	71	96	67	78	76
CTCTGTGTCTTGTTTC	ref_5724_new	54	46	42	38	36	40	48	37	54	42
TCGAGCTTCATCTAAA	ref_5724_new	2	8	9	4	10	4	14	8	10	5
CTGTCCCATTCCTTGA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
ACCTGAACGCCCTTTC	ref_5724_new	0	0	0	0	0	0	0	0	0	0
TCTGCTCATAGAATTG	ref_5724_new	52	59	67	48	60	59	74	50	55	57
CAGATTAGGGGATTGC	ref_5724_new	117	141	127	129	177	117	153	118	164	102
TTGGAAAGTTCGTGCT	ref_5724_new	82	95	83	83	95	90	91	71	91	71
AGACGGCTAGTTGCTA	ref_5724_new	56	59	35	38	39	49	29	39	52	32
TCGGGCCAATTAATAG	ref_5724_new	22	14	23	16	29	16	32	19	26	17
GAGCAGCCCCGTTTGC	ref_5724_new	40	43	44	44	46	25	36	23	38	27
TTCATTTATTGCTCGC	ref_5724_new	39	57	87	71	77	48	54	54	83	56
GCGTCTGTAGTTTGTT	ref_5724_new	23	14	28	29	33	24	36	20	24	24
CAGTACCGTATTTGTG	ref_5724_new	73	99	98	69	121	93	111	70	112	71
GCAAGGAATATCCTGA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
CCCACGGCCATGCCCT	ref_5724_new	38	38	45	44	46	42	37	19	36	25
CAGCTTCTCGGTGAGC	ref_5724_new	4	11	15	5	6	5	10	2	13	10
TTCTGGCTATATAGGA	ref_5724_new	18	17	18	12	18	15	13	16	21	16
CAGGGTCACTATACAA	ref_5724_new	22	36	28	27	23	18	21	16	20	19
ACTTGGGAGTCGTCCC	ref_5724_new	28	19	15	30	21	16	26	18	28	13
GCATTTGTTGGAACGG	ref_5724_new	94	157	140	118	162	133	157	96	151	101
ACCCCATCGCGGTCAC	ref_5724_new	3	12	12	8	9	2	6	5	5	13
TATAGTGGCCGGGTCT	ref_5724_new	36	25	23	33	45	26	41	32	42	34
TGCTATGCGGATCAAG	ref_5724_new	49	56	71	72	53	49	50	53	78	55
TTCCCTGTATTTGGCC	ref_5724_new	14	24	11	14	28	16	20	26	19	25
GGCAGGCCTGGGAACC	ref_5724_new	0	0	0	0	0	0	0	0	0	0
ACGACGACACTGGCTT	ref_5724_new	15	18	9	23	33	19	21	12	25	13
CTTCTTGCCTATGGCA	ref_5724_new	23	23	20	20	20	21	22	20	31	13
GAGCGGGTGCTGAGGG	ref_5724_new	0	0	0	0	0	0	0	0	0	0
GTTTCCCGGGTAAGCT	ref_5724_new	0	0	0	0	0	0	0	0	0	0
TTGGAAGGGAGTAATT	ref_5724_new	43	44	54	44	47	37	49	26	48	45
CTATCTATTAATCCAA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
AGGGGGCATGGCTTGC	ref_5724_new	25	27	28	26	31	32	32	17	34	26
TGGCCCAAAGTTAAAA	ref_5724_new	12	17	14	21	20	14	13	14	19	19
CTTACTTCATTATGTG	ref_5724_new	36	35	50	30	42	31	31	39	41	45
ATGGAGATTGTCTAAG	ref_5724_new	22	19	21	24	26	13	19	27	32	13
CCGGCTAGAATTTTCT	ref_5724_new	59	55	68	51	56	54	53	50	78	49
TATGAAGCGCAATCTT	ref_5724_new	36	58	47	31	39	49	49	44	58	44
TCTAGTGCAAGTGCGC	ref_5724_new	26	27	29	20	20	13	19	14	24	10
CTTTATTTGGTTTTTT	ref_5724_new	47	42	43	50	43	42	58	38	58	39
TGGCCGGCAAAGCGCT	ref_5724_new	28	35	38	31	45	27	31	36	27	30
AATATCTAGATGCACT	ref_5724_new	0	0	0	0	0	0	0	0	0	0
AATATATCGTTCCGGA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
TTCGGTATTTTTTCTA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
CGTTCCAACTAATGCT	ref_5724_new	44	46	49	33	42	41	56	41	47	36
ACATATGAATTATCAT	ref_5724_new	0	0	0	0	0	0	0	0	0	0
ACGGCCGACTCGTTAA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
TTCCCAGCGTGCCATT	ref_5724_new	31	17	24	33	32	17	21	21	30	23
GGGTTCGGATCATGCT	ref_5724_new	13	14	15	14	10	16	18	6	18	12
CTCCCAGGGGCATAAG	ref_5724_new	21	10	13	21	11	15	13	11	19	14
TTCGGCTGACTTGCGT	ref_5724_new	5	24	8	6	22	12	14	6	14	7
CTCACGGTTTTTCGGC	ref_5724_new	12	9	3	13	15	10	16	6	10	1
TACGGTACCTGCGTAC	ref_5724_new	0	0	0	0	0	0	0	0	0	0
ATGGCTATGTGTTATT	ref_5724_new	12	7	4	5	6	8	14	8	15	6
TGGCCATCTTTCCGTG	ref_5724_new	0	0	0	0	0	0	0	0	0	0
GTGCTGGGTTTGGGGT	ref_5724_new	12	17	13	14	9	6	10	2	10	8
ATTTTAGCCAAGACCA	ref_5724_new	8	8	11	20	14	5	13	14	10	5
CCGCCAGCGTTTGGCT	ref_5724_new	19	18	22	22	10	9	21	21	21	9
CTTGGATGTTGTGGTA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
TAGATGGTCCGGGAAT	ref_5724_new	0	0	0	0	0	0	0	0	0	0
CCAATCGGCTGGATCC	ref_5724_new	11	94	14	15	72	19	71	11	71	10
AACGTGGCCTCCCGCA	ref_5724_new	2	2	1	1	1	0	1	3	1	1
TCCTTAATGATAGTTC	ref_5724_new	18	17	30	18	22	20	22	31	34	14
GCATGGAGGAAAATTT	ref_5724_new	16	9	12	7	11	13	3	8	18	7
ATTCGGGCTCGCAACT	ref_5724_new	12	11	5	5	5	3	4	12	9	4
ACCTAGCCACTTATGT	ref_5724_new	23	36	19	32	51	21	42	24	48	25
TCTATGCTAAGCCCGT	ref_5724_new	7	5	14	9	11	6	5	7	15	17
CGCGTTCGGCCCTATA	ref_5724_new	38	31	30	33	33	26	41	32	37	25
AGCCCTGTCCTGTCTC	ref_5724_new	33	70	67	41	70	24	77	35	92	40
ATTATCATTTATAGGT	ref_5724_new	34	76	52	69	60	57	65	46	79	37
TTCCTTGTTTCTCTTT	ref_5724_new	44	39	60	37	49	44	43	49	41	40
CTTATCTACCTTCGAG	ref_5724_new	31	62	51	38	49	33	45	18	52	27
TTAGTTTTAGTGCAGC	ref_5724_new	76	88	97	78	83	66	94	68	100	80
TTTGGAAATGGTCAGT	ref_5724_new	6	6	4	6	1	2	0	1	1	3
AGATGGTTGGACATTA	ref_5724_new	0	0	0	0	0	0	0	0	0	0
TATATATCGTTCCGGA	ref_5724_new	632	746	715	544	610	580	677	511	789	513
TGTATAGACACGGTCT	ref_5724_new	34	56	53	38	39	33	38	45	63	34
GCATACTGCAACCTCA	ref_5724_new	3	7	2	4	6	2	1	3	3	6
CTGATGTCATTCCGCG	ref_5724_new	75	98	97	98	90	78	80	67	122	68
GTGGGCTTACCTAAAG	ref_5724_new	9	8	10	6	17	11	25	10	17	13
ATTGAATAACCCCGAC	ref_5724_new	35	38	52	33	54	42	43	27	44	51
CGCAGAGTGCTTTTAC	ref_5724_new	20	36	26	16	13	13	32	17	30	13
ATACCTTGGACAAATC	ref_5660_new	58	101	90	79	67	68	116	44	107	56
AAATGTTTAACCGGGA	ref_5660_new	27	17	23	26	25	12	24	23	31	27
AATAAAATACATTATA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
ACTTGGCTGTAATCAT	ref_5660_new	18	14	15	13	22	12	17	13	25	17
CAACGCGATCCTTTCA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GGTCGGCAACACGTGA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CCGTTAAATCGAGGTT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TGAAATTGGATCCTCC	ref_5660_new	30	39	31	46	50	30	34	39	40	26
CTGGTAAATTTCCACT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TCAAAGACTCACTTCC	ref_5660_new	8	7	2	10	4	1	2	1	8	0
ACAGAGCTTGACTGTG	ref_5660_new	22	28	36	25	38	14	34	17	33	24
CGTCCTGGTATGCATT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CGTACTATTGTAGTAT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
AATCAACGTTATGGGA	ref_5660_new	24	29	22	17	23	10	19	12	12	15
TCACGAACCGCGGGCT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CATGTTTGTTAAGTTC	ref_5660_new	27	32	27	36	49	37	46	24	50	33
GTACGCGGTTTGCCGG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GCTGGGACCTTTGTGT	ref_5660_new	1	1	5	2	2	3	4	1	6	0
AGTTATGTTCCGCCCT	ref_5660_new	13	20	29	11	15	17	16	16	24	24
GGCTTTGGTTGAAGAG	ref_5660_new	22	30	29	25	29	23	24	17	18	11
GCGTCAGATAGCAGTC	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TGTCATCGCTATCAGT	ref_5660_new	44	42	46	33	37	39	49	30	35	26
TTTCCCCGTCATCTCT	ref_5660_new	1	8	1	1	16	3	13	1	15	0
GACTACGTGTTCAACT	ref_5660_new	211	302	276	219	268	186	328	219	358	199
GTACCCGCTTTGCTGG	ref_5660_new	1	2	0	0	2	1	3	0	3	2
TCGAGTGCACATCGGT	ref_5660_new	40	54	36	36	52	34	75	41	77	24
GCTGCTTGCTTTACCT	ref_5660_new	20	21	23	18	26	20	25	19	35	25
AAAGGGTATGGTGGGA	ref_5660_new	12	10	9	10	15	4	15	10	16	8
AATTTTTCTTTGGGCT	ref_5660_new	5	0	5	1	2	6	3	2	3	2
TTACTGCCATGGCAGA	ref_5660_new	112	132	107	89	130	94	114	104	128	89
GCCCACATTGTCAGCC	ref_5660_new	5	4	1	3	6	2	2	1	3	2
TGTGACTGTGTTCCAG	ref_5660_new	29	39	23	32	30	17	29	22	29	27
TGGTCACCTCCCATCC	ref_5660_new	61	30	35	53	16	41	26	46	22	26
CTCCGATATCACGGGC	ref_5660_new	15	17	15	19	21	18	21	14	18	12
ACCTTTACGCAAGCCT	ref_5660_new	12	17	9	9	15	12	23	10	17	10
CGCGTTCAACTTTATG	ref_5660_new	27	48	31	18	38	27	54	36	44	24
TTCGTTGCTCGATTTT	ref_5660_new	20	20	15	15	29	19	18	24	29	14
GCTCCTCTATGTTCTG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TCTCCAGGCCGATATC	ref_5660_new	11	16	3	8	9	3	8	14	9	6
TGTGCATTGGTATTTG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CGACTTCGAATAATAC	ref_5660_new	3	4	7	4	7	4	14	6	5	3
AGCTGTTTTTATTTGT	ref_5660_new	55	56	42	61	50	57	52	37	61	46
GTGGACCGGGATTGTA	ref_5660_new	7	28	24	17	26	15	19	18	22	16
GTCGTTTACATCCGAG	ref_5660_new	28	41	52	42	50	42	43	39	41	28
AGACGCTTAGTTCGCT	ref_5660_new	73	120	111	97	122	91	127	83	141	70
TAGTCTGTCATATCGA	ref_5660_new	3	3	2	3	7	2	1	2	6	2
TCGCCGCCCTAGCGGG	ref_5660_new	4	3	0	2	2	1	3	1	5	4
CTTCATCCGCCGACGA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GGCGTAATATATGTAG	ref_5660_new	24	41	37	26	54	31	35	31	36	30
AATCTCGGTTCTCATA	ref_5660_new	7	8	11	3	18	12	7	14	4	7
GCGGTTTATACACCGC	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TGGTGCCTTGAAAGCG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
ACACATGACCAACAGG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TGTTTAAGTGCCCTCC	ref_5660_new	5	10	9	9	8	9	9	6	11	7
ATCCTATCCAACGTTC	ref_5660_new	2	10	3	7	9	5	5	8	7	1
TTTCTGTTGTGCCTTA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
ACCATCCGTTAGTAGA	ref_5660_new	5	19	7	2	14	9	17	3	9	11
TGTCTTCGCCCTCCTC	ref_5660_new	53	31	27	32	33	40	29	37	24	32
ACGGATCGGTGGGCTC	ref_5660_new	12	26	17	14	12	12	23	12	19	12
CCGCGCTAGTTATCAG	ref_5660_new	1	13	5	4	10	1	9	1	7	3
CCTGCCTTAGGCCCTC	ref_5660_new	21	31	12	15	22	12	24	11	16	13
ACTTCCTTTAACGCAC	ref_5660_new	1	3	0	0	2	4	5	2	5	4
TCCGGCTATGCTATAT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GACTACGAGTTCAACT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CTTCTCCATGTCGGTC	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CTCTAAGGTTCTATAC	ref_5660_new	17	39	27	29	31	15	21	19	26	21
TAATCAATTCTAATCT	ref_5660_new	6	10	2	20	3	6	9	2	9	5
GGAAGGGCTCCCTCGT	ref_5660_new	33	45	39	34	49	31	54	25	54	42
TTTAGTGATCCCAGTC	ref_5660_new	22	18	22	18	28	15	33	13	15	15
TTGCTAACCGGGTCTG	ref_5660_new	28	27	39	26	35	17	54	29	32	8
GGGTATGGTTCTGTTA	ref_5660_new	17	22	18	23	26	24	17	26	24	19
CAACGCCGCCTCATGT	ref_5660_new	4	9	1	2	7	4	4	3	9	2
TACCGACGGAGAACTT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CTGTTAATCTTGCCAA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TCTCGTCCGCTTTAAA	ref_5660_new	14	32	18	20	21	18	28	27	29	22
TAAGCCTCGGCGCCAG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CCCCTAGGGTCATAGG	ref_5660_new	6	11	5	12	12	17	21	9	22	4
CAAGAGTGCAATAATA	ref_5660_new	33	58	33	28	54	18	53	21	56	37
GCACTAACGTACCATA	ref_5660_new	12	29	20	19	19	12	18	14	20	13
ATACCAGCCCGTGGGT	ref_5660_new	6	7	12	13	4	14	11	6	6	12
TATTGGTCTAACATTA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CGTACTTCTCAATGTT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GAGTTCTCTTCGTAGA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CCGGCTACGTATTGGG	ref_5660_new	1	22	3	1	14	1	25	2	28	3
CTGAGTCTCAATTCAT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CAGTCATTCAACTTAG	ref_5660_new	132	213	152	127	228	131	210	125	262	104
GCCGTGCCCATTCGCG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TCCTGCCCTCATGCCC	ref_5660_new	5	7	9	5	5	4	3	2	9	1
GGCACAGTCGAGTTTT	ref_5660_new	48	64	48	40	58	33	46	35	57	27
GCGTTCGGCGCGAGCC	ref_5660_new	38	34	45	36	23	28	36	32	43	31
TCGGGAATGATCGGTG	ref_5660_new	28	29	23	19	39	28	32	15	43	27
AGTTAGCTAACGCACC	ref_5660_new	5	12	8	7	9	16	7	6	16	10
GCCTCTGACTTTATAT	ref_5660_new	17	19	16	17	10	11	13	12	24	9
ATTTCTGACGTGAATT	ref_5660_new	6	7	8	5	10	6	8	7	10	10
AGGAGTATCTTGACGT	ref_5660_new	13	16	11	19	24	17	23	24	24	10
TCTTACCTCGGTACTG	ref_5660_new	2	18	4	3	19	1	14	1	22	3
ACTCAAACGGCTCGCC	ref_5660_new	6	6	3	3	4	2	7	8	9	6
TGCAGAGGCCACTTAC	ref_5660_new	19	17	20	21	46	32	44	28	27	26
CTATCTACTATTCCCT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GTTTCTCCCACGGCAT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CTTGCAAACACGGGGG	ref_5660_new	75	88	99	85	95	76	84	85	102	64
AGATCACACCCTGCGA	ref_5660_new	44	52	47	45	67	34	56	39	52	43
GGTGGTGAGATATAAG	ref_5660_new	16	37	38	18	43	38	38	34	50	28
ACCTGGGCTTGGGCTC	ref_5660_new	0	0	0	0	0	0	0	0	0	0
CAATTGGCATACTCGT	ref_5660_new	28	42	46	43	63	29	48	30	44	36
CTCATCCCTCCGTCCA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GACACTTGCTGTCTAA	ref_5660_new	85	124	99	80	139	74	102	69	119	78
TGGTTTCTTGGGTGCG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
GTTGGTAAGGTCAGTT	ref_5660_new	8	16	8	6	7	7	21	7	11	4
CTCACAATGGCTCCAA	ref_5660_new	0	0	0	0	0	0	0	0	0	0
AGATTTAGCGTGACGT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TAACCTGGACGCCCCG	ref_5660_new	2	11	8	3	1	8	9	3	6	3
GTTAATCGGCATTGAG	ref_5660_new	0	0	0	0	0	0	0	0	0	0
ATAGGCACCGGTTCTC	ref_5660_new	52	70	70	45	72	39	73	56	67	43
TCGAGGTTCTTGGTTC	ref_5660_new	14	26	13	10	14	16	21	13	24	10
AATTCCCTTGCAACAT	ref_5660_new	0	0	0	0	0	0	0	0	0	0
TACATATCCATTGCCA	ref_5660_new	9	16	4	8	8	5	2	6	12	6
TTGTACTGTCATTATA	alt_5954_new	2	5	0	1	3	0	2	2	1	0
GTCTGTCCTTCTACCA	alt_5954_new	0	0	0	0	0	0	0	0	0	0
ACAATAACGTCGTGGT	alt_5954_new	16	59	16	15	65	11	46	15	40	11
ATAGACAATCTGACAT	alt_5954_new	2	14	7	1	13	2	7	4	8	3
GACTTGTCTGTAATGA	alt_5954_new	3	12	3	1	9	3	5	0	10	1
TCGCTTATGTACGCAT	alt_5954_new	3	10	5	3	8	5	7	3	8	5
ACGATCCGTATGCAAA	alt_5954_new	37	50	30	30	57	29	54	19	57	19
TTTGTTGGCCAACATC	alt_5954_new	5	5	8	3	13	1	16	4	8	6
CTATCGATCTGAATCT	alt_5954_new	17	56	36	28	51	27	78	35	68	35
TACTCTGACTAGCGGG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TCCTCTCCTGTGTACT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CACCTTTAGCCCTTCT	alt_5954_new	10	24	13	16	26	8	25	13	27	12
CTTTGACTCGCAGAGT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CTCTTATTGATGTGAG	alt_5954_new	13	32	12	15	35	16	30	11	26	15
CCTCTTCAAAGGTGGG	alt_5954_new	7	62	12	13	73	3	48	3	50	9
TCCCCTAGTATAGACG	alt_5954_new	116	308	113	105	353	84	324	85	367	74
TCGAGTGAAAGCGCGC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CTAAGCTGATATACGT	alt_5954_new	13	36	24	31	32	12	42	14	31	19
TAGCTCAATACAGTCC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CCTTCCTCCATGGGCT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
ATAGGGGGTTAGGACG	alt_5954_new	14	44	33	28	47	11	51	21	54	18
TCCAGACCCATACAGC	alt_5954_new	70	181	84	88	194	57	208	77	208	49
TAAGCCTGCCAAAGAT	alt_5954_new	5	5	5	4	7	5	4	2	8	2
CTATGTCATCTTGAGC	alt_5954_new	25	48	10	23	49	25	55	25	50	17
CAATGTAGCTTAGGTG	alt_5954_new	0	1	0	1	0	0	2	0	6	1
TCCAGCGGTCGCCTCC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CCCTCTATCCCGTCGA	alt_5954_new	0	0	0	0	0	0	0	0	0	0
GTGCTCCAGTCAAGTT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CGAAATTGCCTGTGTG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CTGGAATGCATTAGGC	alt_5954_new	21	47	22	21	46	17	44	7	44	11
TCTTGTGGAACCTTGC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
ACTTGCCCGTTTGTTC	alt_5954_new	12	48	12	13	48	22	44	17	49	15
TTACCTTACTTATATA	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TTTTTTTTGTGGTTTT	alt_5954_new	0	0	0	0	0	0	1	0	0	0
TCTAGCGAGATGTTTA	alt_5954_new	0	0	0	0	0	0	0	0	0	0
GAATTGGTCAGAACTA	alt_5954_new	13	40	19	12	44	15	36	17	36	10
TGTCTACCTCACTTCC	alt_5954_new	24	31	29	27	50	24	46	27	40	20
CAGACAGACTGCATTT	alt_5954_new	2	15	7	9	12	3	15	3	8	3
CTTTGCCAAAATTGGA	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TTTAAATGGCTGGTTG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CGGCGCTTCTCATGCT	alt_5954_new	24	54	23	24	41	26	64	18	50	32
TAACTTGGGCTCGGCT	alt_5954_new	6	27	12	11	30	27	21	14	27	14
TTTTTTTGTGGTTTTT	alt_5954_new	3	10	4	1	3	5	8	5	2	0
TTGGTACATTCAAAAT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TTCCATCGATTGTGCC	alt_5954_new	47	96	54	47	96	35	89	50	108	34
GAACAGGAGTCCAGCA	alt_5954_new	51	120	67	66	126	65	137	77	147	60
TCAGTCTGGATCAGAA	alt_5954_new	2	15	7	7	10	2	11	0	11	3
TCTTCTCCAGGGCGTT	alt_5954_new	12	14	17	9	20	12	15	11	25	11
CCCCTTTATTAAAAGA	alt_5954_new	6	17	9	8	15	8	19	0	23	4
ACTTATCTTTTTAAAG	alt_5954_new	19	44	15	19	37	13	48	16	29	21
AATATTCTCTATAATT	alt_5954_new	71	157	81	82	147	68	169	66	183	72
ATGTGGCCGCTCACCT	alt_5954_new	45	138	72	59	131	56	147	76	117	53
TTATTAACCGTCATTT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
GATGGATTATATCTTA	alt_5954_new	6	13	10	13	27	8	17	5	11	13
TTCGCCATCAGTCCTT	alt_5954_new	11	15	17	25	27	18	35	18	29	9
TTGATGAGCATACAGG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CGTGCTTTTCCTTTTT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CCCTCCGGCGCCGTTA	alt_5954_new	8	22	9	9	21	10	29	5	17	9
CCCCGGGTTATATTGG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
GGTTGTGCATTTTCTT	alt_5954_new	7	20	7	2	13	7	10	10	21	10
ACGTGTCAATTTGCTA	alt_5954_new	12	10	11	20	14	10	20	8	8	15
TAAATTGCGAAGCTCG	alt_5954_new	13	17	9	15	22	10	27	14	20	8
AGTGGCGAGTTGCTTC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
GTCGTCTTATTCAGAA	alt_5954_new	3	10	5	10	9	2	14	5	9	3
CTGTATGCGCTGTTTA	alt_5954_new	11	15	12	10	22	9	26	8	18	2
ATTCTAAACGTAGTTA	alt_5954_new	1	16	14	4	21	4	11	6	20	10
TCACGGGAGTCTCGAC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TTGACGCTCTGCGGCG	alt_5954_new	2	4	6	5	7	1	11	2	11	0
GGCTGTATAGAAATTC	alt_5954_new	3	11	9	5	15	15	14	4	12	6
TATGTAACCACTTGGC	alt_5954_new	17	62	35	33	79	30	91	22	64	28
ATTTATCTCGTGTAAG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TGTAGTACGTAACCTA	alt_5954_new	15	38	22	15	37	19	24	11	39	12
GAGGTCCGCTTTGATG	alt_5954_new	22	49	35	19	57	24	37	22	42	30
CGAATTCTTCGGAGGA	alt_5954_new	17	51	19	13	28	14	33	8	45	3
CCTGCTTTCCATGTCG	alt_5954_new	30	34	15	15	35	21	35	22	37	20
CAAACTTACGTTTCTT	alt_5954_new	30	79	36	29	85	32	80	25	97	24
CGGCAGCCTTGTGTGT	alt_5954_new	11	17	17	8	18	7	22	8	18	3
GGCTTTTTTCCCGAAC	alt_5954_new	5	9	2	2	10	4	13	2	9	2
TTAGCAACGAGTAATC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CCAACGTATGCACTAG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CACCTGCTAATTCACT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CTGCATTTATGCCGAA	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TGGTTTTTAGCTTCAG	alt_5954_new	1	3	3	2	3	1	2	4	3	2
GTCTATAGCTGACACG	alt_5954_new	18	27	29	8	39	17	24	14	44	10
GACTTACGATGAGCTA	alt_5954_new	43	127	74	42	99	56	111	37	145	46
GTGTTGCAGAAGATGT	alt_5954_new	6	18	7	8	27	3	27	7	21	7
CGTTCGCGTAGGGGTT	alt_5954_new	19	29	18	15	27	17	39	26	43	11
CACAGAGAGCCACGTC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TAATCTTTGCATAGTG	alt_5954_new	11	36	13	9	34	13	44	9	34	11
CCACCCGGCAGATTGA	alt_5954_new	0	0	0	0	0	0	0	0	0	0
CATCCGGGATAGCTTA	alt_5954_new	5	13	6	5	9	3	4	2	21	12
AGCTTAAAGAAAGGGT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TGCACGTAACAGTGAG	alt_5954_new	3	17	8	5	18	6	10	8	8	2
GAAATTCTCGACCGAT	alt_5954_new	4	22	9	6	14	2	11	8	14	5
CTGCTGCGCCTCATAT	alt_5954_new	4	8	10	1	15	3	15	5	9	8
TCGCTATTAGGCGGTG	alt_5954_new	0	0	0	0	0	0	0	0	0	0
GGTAAGCGCGTTTTCT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
ATTGTACCATGTTTCG	alt_5954_new	35	73	44	33	81	44	93	34	94	41
CTATGTGTCGCGTCAA	alt_5954_new	18	43	25	14	35	19	36	12	46	17
TTTGATGGTTTCTGAG	alt_5954_new	16	27	26	17	38	18	21	13	38	4
CTTTTCTCGGCCTCCT	alt_5954_new	0	0	0	0	0	0	0	0	0	0
ACTGCCTACCGAGTGG	alt_5954_new	0	3	3	0	2	0	4	0	2	0
GGGCGGAATTACGTTT	alt_5954_new	9	11	7	8	11	14	14	5	22	11
TGAGCACAGATGCATG	alt_5954_new	32	64	46	28	85	31	63	29	80	26
CATTATAACCACGGTT	alt_5954_new	17	41	30	17	37	13	46	15	40	20
CCCATTGGCACTATCC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
AGGCCGCCTCTAGAAC	alt_5954_new	0	0	0	0	0	0	0	0	0	0
TTTACCACAACGTCGG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
CCGGCCCCCTTGAGAC	ref_5703_new	2	5	2	0	9	2	12	5	10	2
TTATGTCCGAAGACCT	ref_5703_new	17	22	14	10	25	14	14	16	34	17
TGGTTATCCACCGCAA	ref_5703_new	23	41	26	28	64	34	39	33	36	23
TGTGGGATGTCGTATT	ref_5703_new	0	4	2	1	1	5	4	4	6	8
TGCAGCCACTGGTGAC	ref_5703_new	6	29	18	17	23	3	20	9	27	14
CCACATCTCCCCTATC	ref_5703_new	4	17	5	3	15	1	21	3	20	2
TCCCCTATTGGCCGTG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
ATCATTTTTCTTAAAA	ref_5703_new	103	189	111	102	195	89	196	117	175	94
GTCCAACGTTAATGTT	ref_5703_new	9	16	7	11	27	11	17	6	26	20
TAATCAATTAGTTTTT	ref_5703_new	0	0	0	0	0	0	0	0	0	0
CTAAATCGAGTTCTGG	ref_5703_new	0	0	2	0	2	0	3	0	3	0
TGCTATCAAGATCTCT	ref_5703_new	20	26	27	18	42	19	34	17	22	15
GGTTATTACGTTGGCG	ref_5703_new	21	35	28	18	33	25	30	22	22	17
ATTCCGCAGCATGCTT	ref_5703_new	16	45	22	23	42	13	41	15	45	21
TTGTATTGATCTCGAG	ref_5703_new	18	22	16	26	23	13	28	17	39	17
TCTGCACGCCAACATT	ref_5703_new	1	5	4	6	6	2	9	2	3	1
GATTGGTCATTGGTGC	ref_5703_new	12	22	15	18	24	18	23	10	29	17
TGGACGGGACGTCCGC	ref_5703_new	0	0	0	0	0	0	0	0	0	0
GTTTGGCGTGTGTGAT	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TACTCATTAGGAAGGT	ref_5703_new	17	26	28	17	26	12	44	14	29	7
GTAAATGTGCCTTTCT	ref_5703_new	85	125	97	92	133	84	131	69	154	60
TAAACACGTCCGGAAT	ref_5703_new	7	12	10	9	12	9	17	10	19	6
AGGCCTAAGGGTGGTC	ref_5703_new	68	116	124	61	138	76	126	72	112	72
ATTATTTCGGTGAGGA	ref_5703_new	0	0	0	0	0	0	0	0	0	0
GCGTGAGCTAGGTCAA	ref_5703_new	0	0	0	0	0	0	0	0	0	0
CCCTGTACCGTCTCGG	ref_5703_new	27	87	56	30	78	39	107	25	83	28
TGTGATGTCGGTCCAA	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TAACAGCTGAATTAGG	ref_5703_new	14	19	1	12	17	8	14	10	21	6
GTCTCCGCATGTTTAT	ref_5703_new	14	28	37	17	18	24	35	8	25	18
GTTTCTTCCATGTTAG	ref_5703_new	121	160	167	139	204	115	172	127	206	124
TATCCGCGGCTCCTAC	ref_5703_new	13	33	12	13	28	10	43	18	33	13
CGCGTTAAATTGGCAA	ref_5703_new	36	78	67	41	82	56	84	43	72	40
GTTCTTCTCAGTGGTG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TGTCGTCGCTCGTTAG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
CGCACGGTTGTTATGT	ref_5703_new	6	15	5	11	20	4	20	3	11	5
CTCCCTTACCCAGCCA	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TGGCGGTCTGATCCAT	ref_5703_new	7	4	6	9	2	8	5	1	2	2
CGCAATCTGGACACGT	ref_5703_new	0	0	0	0	0	0	0	0	0	0
GGCCAATGTTCAATCA	ref_5703_new	11	17	13	2	13	6	15	10	25	11
GTACGGGTTTGTGTTT	ref_5703_new	12	19	16	14	14	6	20	11	29	10
ACACCGTGGTAGAAAG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TCGTGGTATGTTCACG	ref_5703_new	27	29	34	23	22	25	36	13	35	12
AGGACTCTCCTTTTCC	ref_5703_new	70	100	60	74	106	65	115	49	104	45
TTCCTACTGCAGTAAT	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TTTGACGTAGGGACGG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TGTAGCACTCGCGTAG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TTGTATGTGGGTGCTT	ref_5703_new	14	38	24	19	48	10	39	17	41	12
CAGCTTCAAGTTTCGG	ref_5703_new	5	47	8	11	43	11	53	6	59	9
AGCCCTGCCATTGGAC	ref_5703_new	54	87	69	57	108	50	97	44	101	37
ATTTACGACCCCGCTT	ref_5703_new	9	13	17	11	29	19	18	9	14	10
GTCATATAGCTGTGTT	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TTAGGTTCCGTCTCCG	ref_5703_new	32	39	24	21	37	22	28	23	32	16
AGCTTTACGTCGATAA	ref_5703_new	14	33	24	13	47	16	36	15	37	14
AGGTCGGGGCGCCGAT	ref_5703_new	28	41	48	30	50	35	55	23	48	20
GCCCGCTGTGGGGGTT	ref_5703_new	14	14	17	13	29	12	21	16	15	15
GGTCGACTTGGGTATG	ref_5703_new	35	106	41	28	117	27	112	30	132	31
TTGCGGCTCAAGGAAG	ref_5703_new	0	0	0	0	0	0	0	0	0	0
TATTCGCCTCTGGGTC	ref_5703_new	23	28	25	6	22	28	36	11	39	18
GGTAGTAGCCGTATCT	ref_5703_new	44	73	65	70	81	44	77	45	83	51
GACGCGAAGCCCTTGC	ref_5703_new	45	50	38	35	57	24	44	37	58	26
GTCGTAATCTGTTCTC	ref_5703_new	80	107	89	72	113	89	103	73	118	60
ACTGGAGTATTTTATC	ref_5703_new	0	0	0	0	0	0	0	0	0	0
GGGTCTGCATAAGCAG	ref_6020_new	16	9	22	18	11	17	25	11	21	13
CAGTCAGCGGTGGTTC	ref_6020_new	16	26	16	22	36	11	39	18	36	23
TCATGTTTAACCATAC	ref_6020_new	37	33	50	40	54	44	55	39	47	33
TATCCGTGTACAGTCC	ref_6020_new	76	82	63	83	106	54	88	70	80	82
AATGCTACGCAGAGTA	ref_6020_new	118	123	137	114	135	104	128	92	107	88
GGCGCATTTTAAGGGT	ref_6020_new	0	0	0	0	0	0	0	0	0	0
AGTAAGGCGGTACTGA	ref_6020_new	15	11	13	15	23	10	23	9	21	5
CCGTCATATGGTACAC	ref_6020_new	16	46	25	21	42	8	37	16	47	10
GGAACCTTCAGGAAAT	ref_6020_new	0	0	0	0	0	0	0	0	0	0
TTCGATTGCGTTATTC	ref_6020_new	29	21	27	19	27	10	32	18	27	20
CTTGCGTCATACCAGT	ref_6020_new	52	91	64	81	91	67	72	54	103	62
AACGGGTCAATGTTCG	ref_6020_new	0	0	0	0	0	0	0	0	0	0
ACTATTAGGCCGATAG	ref_6020_new	0	0	0	0	0	0	0	0	0	0
ATCAAATATAGACACT	ref_6020_new	32	38	43	39	36	31	33	28	34	23
TCTGGAGGTCCTAATT	ref_6020_new	0	0	0	0	0	0	0	0	0	0
GCATGTCCATTTATTG	ref_6020_new	69	84	86	66	103	70	85	69	93	45
GGGGACATGGTACCTC	ref_6020_new	0	0	0	0	0	0	0	0	0	0
GATTCAATTCGCCATG	ref_6020_new	1	5	2	3	1	2	2	2	7	0
GATCTCGTATACGGGG	ref_6020_new	75	83	87	78	94	77	72	64	103	61
CGCCAAAGGGAGCGGC	ref_6020_new	36	37	39	38	40	41	45	33	48	36
CGAACTTACGTAAAAG	ref_6020_new	35	27	24	37	38	26	16	29	36	30
TTCACTAGCCTGACAC	ref_6020_new	10	11	9	8	6	4	5	3	8	5
CTGAGGGCCAAGGTGA	ref_6020_new	0	0	0	0	0	0	0	0	0	0
TACTCGCCTTGCATTT	ref_6020_new	176	275	228	192	267	184	301	193	256	150
CCAAGCATTTTACCTG	ref_6020_new	3	8	5	3	5	2	7	8	12	5
GTAAACCTAGTGTACC	ref_6020_new	0	0	0	0	0	0	0	0	0	0
GCCTAATGCGTTATGC	ref_6020_new	60	78	75	58	118	66	93	61	90	48
ACCTGCTTGTTATTCT	ref_6020_new	0	0	0	0	0	1	0	0	0	0
TCGATCTACTCGCCAT	ref_6020_new	8	14	4	9	6	3	12	4	9	7
CCCTGTCAGGTTTGTA	ref_6020_new	0	0	0	0	0	0	0	0	0	0
ATTCTAGACTTGGCTA	ref_6020_new	0	0	0	0	0	0	0	0	0	0
GTTTGTTAGTGCGGTT	ref_6020_new	9	21	19	11	13	16	20	12	22	14
TTTGGACCAGGTTCCG	ref_6020_new	48	81	57	64	54	48	90	52	58	47
TGTTTTAGATATTACT	ref_6020_new	8	5	5	5	7	9	7	5	12	4
CCTAATCGTCTTTTGT	ref_6020_new	33	39	47	30	40	30	39	30	41	41
GTGGTAGATTTCAGAG	ref_6020_new	12	6	11	4	19	9	14	8	16	8
GGCGATTAGGTCTGCC	ref_6020_new	0	0	0	0	0	0	0	0	0	0
TAGGTGTGCTCAGTTG	ref_6020_new	0	0	0	0	0	0	0	0	0	0
GTATTCGTTATTGCGC	ref_6020_new	3	8	6	4	2	1	7	3	4	7
TTCTGATTTAGCGACG	ref_6020_new	26	46	27	20	48	27	38	18	38	24
GCTAGCAGCAATCTAC	ref_6020_new	19	10	18	26	19	18	10	14	28	20
GCGATTTTCTGAATTT	ref_6020_new	84	115	124	85	107	97	104	102	113	76
CGCGCTACTTTAGATT	ref_6020_new	12	24	18	16	25	16	19	10	25	12
GGGGAGATCCAATTTT	ref_6020_new	60	38	62	53	35	44	52	46	44	45
GTGTGGCCCCGCAGGG	ref_6020_new	13	17	13	10	14	11	22	12	20	5
CGTCTGCACCACTATT	ref_6020_new	0	0	0	0	0	0	0	0	0	0
CTCTATGCGTTATCAC	ref_6020_new	24	24	24	26	47	23	39	19	23	21
GGTGCAGGTGTTAGCT	ref_6020_new	28	32	28	22	29	32	41	41	38	20
TGTAGATTTGTATTTT	ref_6020_new	167	181	227	168	184	148	206	131	200	136
CGTTGGTGTAGAGACA	ref_6020_new	130	166	171	157	154	127	191	115	186	124
GAACTTTAATTATGCC	ref_6020_new	0	0	0	0	0	0	0	0	0	0
CGGGGTCCTTGGGCCA	ref_6020_new	35	36	35	35	40	39	41	33	52	25
CCGATGCATTCAGCTG	ref_6020_new	14	23	28	20	28	16	30	24	33	16
TAGAACTCGCATTCTG	ref_6020_new	3	5	4	3	1	4	7	4	6	3
TGGCTTGTTTTTGGCT	ref_6020_new	59	78	66	45	56	44	34	46	66	32
TTGCTCCATGATTCTT	ref_6020_new	0	0	0	0	0	0	0	0	0	0
AATATACCACGCGAGT	ref_6020_new	53	58	76	56	72	39	63	57	82	57
CGCTGGAGCCCATGAC	ref_6020_new	13	41	28	19	24	23	34	19	38	20
CTGTAGGCGGCGGTTA	ref_6020_new	25	34	18	18	27	16	28	8	15	25
AGCTCGGGGTGATTGC	ref_6020_new	0	0	0	0	0	0	0	0	0	0
TTACTCCTTTTTTTGT	ref_6020_new	0	0	0	0	0	0	0	0	0	0
AACCTTTAGGTACTTT	ref_6020_new	31	38	35	22	40	26	34	36	32	34
GTTACGGATCTCAAGG	ref_6020_new	0	0	0	0	0	0	0	0	0	0
TAACGTTAACATCGCA	ref_6020_new	67	58	75	64	74	56	61	59	64	57
TTCATCAAGGCACGAT	ref_6020_new	150	172	162	150	179	145	213	126	163	136
AGGGTCCATGTATGCC	ref_6020_new	29	68	31	20	62	25	85	25	70	23
ACTACCGATGGTCTTT	ref_6020_new	23	23	17	24	20	22	22	14	39	21
TGAGTGATTCCACAAT	ref_6020_new	15	14	25	14	34	11	23	14	23	12
TGCCCGTTCGCACGCG	ref_6020_new	71	71	75	82	75	70	70	58	65	72
TCGATACACGTGACGA	ref_6020_new	24	24	47	18	34	31	35	33	27	28
ACTCTTGCTCAGTTGG	ref_5796_new	16	5	17	19	16	8	12	10	13	20
TATTGTGGCTAACCCG	ref_5796_new	479	406	623	528	403	519	415	493	422	468
ATGGTAAGTATCGATC	ref_5796_new	11	10	10	13	6	10	12	9	9	8
ATCAGCCGTTGTAGAG	ref_5796_new	74	71	106	69	93	50	91	72	68	60
GGGGCTACGTGTTATG	ref_5796_new	12	11	21	6	11	16	8	17	9	8
CATTCTTCTTACGTAC	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TAGAACTCGCCCGGTA	ref_5796_new	0	0	0	0	0	0	0	0	0	0
GACACCTTGAAACTAT	ref_5796_new	0	0	0	0	0	0	0	0	0	0
GGCCAGTGCTGTAGGC	ref_5796_new	0	0	0	0	0	0	0	0	0	0
AACACTTGAAGGTTTC	ref_5796_new	13	8	6	5	6	15	12	10	11	7
AACTGCGGGACAAGAC	ref_5796_new	61	39	49	45	40	53	52	49	52	53
GGGTTAATCTAACGGA	ref_5796_new	0	0	0	0	0	0	0	0	0	0
ACTACTTACGCACGGC	ref_5796_new	0	0	0	0	0	0	0	0	0	0
ATGAACCATAGGCATC	ref_5796_new	0	0	0	0	1	0	0	0	0	0
TGTGCGAATTCAAATG	ref_5796_new	62	56	92	64	65	64	68	50	74	66
GGTCTTTGTATTGTAG	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TCTTATTCATATCGAC	ref_5796_new	80	64	99	67	54	79	58	81	54	88
TAGCCACCGAATAACG	ref_5796_new	71	48	82	50	76	61	44	61	56	61
TCGTGGACTTCTCTTG	ref_5796_new	53	26	48	53	41	48	37	46	48	45
AGTTCGTGCGGCAAGG	ref_5796_new	83	52	90	74	65	69	77	83	67	75
ACGCATTGTGCTTGGT	ref_5796_new	0	0	0	0	0	0	0	0	0	0
CTAGCCTCAAGCGACA	ref_5796_new	0	0	0	0	0	0	0	0	0	0
ATAAGGGCTGATTGCG	ref_5796_new	37	36	40	20	28	25	22	31	43	40
AGCGACTACACGGCTG	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TCCGTTTAAACAAGAG	ref_5796_new	0	0	0	0	0	0	0	0	0	0
CCGTCAGACATAGTCA	ref_5796_new	0	0	0	0	0	0	0	0	0	0
AATCTGGAGTTCTTTC	ref_5796_new	23	22	35	33	24	38	34	29	25	30
ACAGGCTTATTGGAAT	ref_5796_new	0	0	0	0	0	0	0	0	0	0
GCGTTTCAACTGCATT	ref_5796_new	14	10	14	12	27	20	9	19	14	16
TTTATGTATTTATCAT	ref_5796_new	3	2	1	2	0	2	1	2	6	1
TCGGTTATGTGAGCAT	ref_5796_new	35	31	42	20	23	30	22	46	27	22
TATCTTCGGGATCCTG	ref_5796_new	13	8	16	15	11	10	11	16	20	17
AGCACCTCCCCATAGT	ref_5796_new	0	0	0	0	0	0	0	0	0	0
AACCCATAAATCCGCA	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TATGGCGGTCGCAACA	ref_5796_new	8	5	5	6	1	7	8	7	5	4
TATTGTATCAGGTATG	ref_5796_new	31	19	39	42	27	34	33	36	26	38
ATGTAAACTCCAAACA	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TTTGGAGTCTTAGTAG	ref_5796_new	26	45	53	30	38	35	52	25	33	31
TGATCTCGTCTTTCCA	ref_5796_new	12	15	33	20	11	21	12	22	18	15
GCCCCACTATCTAGAG	ref_5796_new	0	0	0	0	0	0	0	0	0	0
AATGCTGGCTCCTTGA	ref_5796_new	245	141	259	204	135	197	144	193	155	203
GCGGCCAATGGCTCTG	ref_5796_new	120	84	157	104	105	91	103	93	81	105
GTTGTCTTTGCTGTCG	ref_5796_new	16	8	25	18	16	15	12	10	10	22
TACCGAGTTAGTACCT	ref_5796_new	62	58	71	58	43	56	66	27	68	47
TAGTAATTTTTGCTAC	ref_5796_new	5	3	13	2	3	7	7	6	8	5
TACCGTTGCGACGTTG	ref_5796_new	60	36	71	41	51	41	44	41	48	64
ATTTTTATGAAATGTT	ref_5796_new	34	28	39	14	35	31	19	15	29	28
CAACACTACGCCCATC	ref_5796_new	5	8	6	11	13	3	9	3	5	4
TCTTTCCCTGTTCTAT	ref_5796_new	0	0	0	0	0	0	0	0	0	0
CCGCGCTTCATGGGCC	ref_5796_new	509	327	591	468	320	442	354	447	355	435
ATAGGGAAAGCCTCTG	ref_5796_new	0	0	0	0	0	0	0	0	0	0
GTCTGCACTGGCACTA	ref_5796_new	17	18	23	31	12	14	16	17	16	21
TTTCCCTGATTTTTGC	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TTGCCCATTCCATACT	ref_5796_new	51	38	56	58	42	48	38	51	41	48
GTGGCTGTCATCGAAT	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TCACGTAATTGCTGGT	ref_5796_new	11	16	23	9	17	16	13	9	13	14
GTCCGTGTATCTCACC	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TAAATATCTTCTAGTG	ref_5796_new	0	0	0	0	0	0	0	0	0	0
CCGGCTGTCCTTTAGT	ref_5796_new	32	29	35	28	31	30	36	40	31	21
TAATATAATGAGCTCG	ref_5796_new	134	112	143	98	100	115	128	110	141	106
TATGTGCCGCTGCTAC	ref_5796_new	61	62	95	61	40	64	49	54	57	68
GATTAAACCTGTGGTT	ref_5796_new	0	0	0	0	0	0	0	0	0	0
TCCTTAAGGTTTCGGT	ref_5796_new	211	167	287	198	156	218	199	231	169	201
TGTTAGCACTCTTGAA	ref_5796_new	0	0	0	0	0	0	0	0	0	0
CTCAGAGGGGCATTAA	ref_5796_new	11	11	24	9	13	12	17	12	5	13
GTCAGTATTCAGTTCG	ref_5796_new	12	18	10	11	11	17	7	16	26	15
TGATAGCGTTCTCCGT	ref_5796_new	38	25	28	31	19	21	19	20	25	34
ATCGAAGATGTTTCTC	ref_5796_new	2	3	11	8	4	5	8	7	6	10
AACTGACAACTACTTA	ref_5796_new	61	45	66	44	38	56	44	41	50	40
CTGTTTATGGTCAAAG	ref_5796_new	5	5	7	12	8	10	6	5	5	9
AGCATCCAGTGCCCAC	ref_5796_new	74	50	80	63	53	49	55	60	59	72
GAAAATTACCGTCGTC	ref_5796_new	0	0	0	0	0	0	0	0	0	0
GTACATTCTCTGCGTA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CAAACAGGCAACTCGC	ref_18_missing	6	5	5	6	8	8	10	16	11	4
GCTTACCCCGACATAA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CAGGAAGAGCCTGCAG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CTCGATTCTAGAAGCG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTTAGACACGGT	ref_18_missing	8	18	11	8	8	5	10	7	8	10
GAGGGACAATTCAGGA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CCAGCCCCACTGTCCT	ref_18_missing	1	11	7	7	8	6	16	7	7	3
ATTTTCCCTGACTCAA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
ATTGCGGACCTTCCGT	ref_18_missing	5	2	5	5	5	1	1	1	5	2
TTGCTCATGAGAGGAC	ref_18_missing	2	0	0	1	0	0	2	0	3	1
CGTTCCATCTCAAGGA	ref_18_missing	11	29	13	6	25	9	22	6	22	7
CTACCGGCAGGTAGCT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GTTTATCCCTCTCCGA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTGATGACGGCG	ref_18_missing	30	29	27	33	46	38	39	22	51	31
CAGCTTCGTGTCGTGG	ref_18_missing	33	45	31	37	29	29	33	28	35	16
TTACGATCGTAATACG	ref_18_missing	12	16	11	14	10	10	8	12	21	11
TCGGTCCCGTTGCCGG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GCAGTTAAGGCCCCGT	ref_18_missing	9	3	9	5	11	6	7	3	7	8
TTATGGTTGTCTCAAG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CAATTTCTGGAATGCA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TGAAACATAGGTTAAA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GGTCTTAATTGTGATG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CTCGTAAGGGAATCGC	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CCTAACTACCGTACGT	ref_18_missing	3	3	1	4	0	3	2	6	10	0
CCATGGCGGTGTAGTT	ref_18_missing	7	4	13	7	12	6	3	14	12	8
TCTGAGTATTGATCGC	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CTGGTGTTATGGATTC	ref_18_missing	6	6	7	4	7	10	5	6	3	8
CCTCCTGTCTTAGCAA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TGATGCGTGTGGGGTG	ref_18_missing	2	4	4	3	5	2	10	5	7	2
TAAGTCAGCAACAGTT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
AAGTCGCATAGGCCCT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CGTGCCAACGTTCACC	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GGCATTCGCTAGCGAT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TCGAGAGGAGCTGGAA	ref_18_missing	19	16	13	14	18	15	24	18	11	25
GTCTAAAGCCTAGAAT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TCCAAGCCAGAGTCTC	alt_18_missing	31	8	12	10	15	13	18	14	23	11
TGCCAGTACCTGCTCG	ref_18_missing	44	64	75	68	61	47	75	56	66	61
CTTCACTTGCATAGTG	ref_18_missing	7	4	8	2	4	7	7	2	3	3
GATTACGCAGCACCTT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CGTAGGCCTATACAGC	ref_18_missing	0	0	0	0	0	0	0	0	0	0
ATTAGGACGTTTTCCG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TGTTCTCATGTTCTAG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CACAACTGGTTCAGCC	ref_18_missing	17	31	20	17	55	14	18	15	20	12
TACACTTTCGTCCTCG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CTGGCTATTTAAACTT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GAAGGGTAGTGCTTGT	ref_18_missing	19	20	16	11	38	13	29	17	24	8
TTGACGAGGGTGACTG	ref_18_missing	6	13	10	8	5	5	17	2	4	7
TCCCACGGGCCACTAG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CTATCGTGGCAGTTCG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GTAAAGTTGAGGGCGT	ref_18_missing	6	6	11	5	5	10	8	1	13	4
ATGTTGTTGTACAAGT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TGCTCGAATTATGTTT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GGTTCGCAGTGTGTGC	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TCTGTCCATGCAGGAT	ref_18_missing	0	0	0	0	0	0	1	0	0	1
GTATAGCCCTAGTAGA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GAGAAGCTGCTAGTTT	ref_18_missing	0	0	0	0	0	0	0	0	0	0
CCACGCGATTACTAGG	ref_18_missing	8	16	10	2	10	5	8	11	11	7
TATGGCTTAGTTATGT	ref_18_missing	14	12	18	11	19	12	20	10	14	10
AGCGCGCACGGCGCAC	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TCTAGGAGACGTCAAG	ref_18_missing	0	0	0	0	0	0	0	0	0	0
GGGGTGAATACGCTGC	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TGGAATCCGGTAATCA	ref_18_missing	0	0	0	0	0	0	0	0	0	0
TTGCCCACGTAATATG	ref_5539_RC	20	28	33	26	16	19	27	16	29	17
TGTTTCGCTTGTCCCG	ref_5539_RC	18	14	24	22	17	21	17	19	16	17
ACATGAGGTTCCAGCT	ref_5539_RC	10	8	7	9	6	11	6	7	14	2
GGGTGCGCCGCATAGT	ref_5539_RC	13	13	10	10	9	9	10	9	9	10
ATATTCGTCGAGTGGC	ref_5539_RC	27	20	18	17	28	20	16	20	22	10
TATGTGTAATTTTGGG	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
CTCGGGTACTTGTGCC	ref_5539_RC	13	20	18	33	17	12	19	19	24	18
TATCATGTCTGTTTAG	ref_5539_RC	47	59	63	43	41	65	41	44	68	32
TGGCCTGCTTATGTGG	ref_5539_RC	83	106	148	101	124	99	117	98	109	87
ATGTATTCGTGTTTGT	ref_5539_RC	101	76	109	92	65	65	86	66	85	51
GCCCATTGTATGATTG	ref_5539_RC	2	12	15	10	17	16	10	10	14	10
TGCGTTATTTATGGTC	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
TAATCTTTGGTATCGT	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
CGGTGGTAAGTAGCAG	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
GTGCGTCTTCAGCTAT	ref_5539_RC	40	47	37	25	41	31	27	42	45	49
GGGAGTGAGTTAACTT	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
GGGCAGATCCCTAAGG	ref_5539_RC	60	49	58	49	44	41	40	39	50	44
TACTGGTCCACGAGAT	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
CGTGCGCCCGAGCACT	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
TGGAGATCAAGTGACG	ref_5539_RC	40	36	43	59	41	36	36	38	59	46
TCCGAAGAAGCACCAA	ref_5539_RC	71	48	65	55	53	50	37	44	55	51
GAGGTGCCGTAAGTCA	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
ATTCATCCCACCCCTG	ref_5539_RC	2	12	1	2	12	1	6	2	14	1
GCGCGGGGCAATGGTA	ref_5539_RC	33	37	48	32	32	29	38	33	42	40
CCTAGGATTGTAGACG	ref_5539_RC	30	35	28	32	29	21	39	25	36	24
GACCTGGCTCTGACCG	ref_5539_RC	46	39	55	49	44	42	48	39	44	40
GCTCATTATGTAGCTT	ref_5539_RC	8	3	7	6	9	4	4	8	5	9
ATTCCTGCACCCTCAC	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
ATATAGAAGGAACGTA	ref_5539_RC	15	18	24	24	24	25	22	12	23	20
GTGAACGGGCATCCTC	ref_5539_RC	5	9	6	8	3	7	7	2	7	11
TGATACTTTCCTGTCC	ref_5539_RC	33	48	56	59	41	55	55	29	48	39
ACAGTGGTTCGGTGTC	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
TTCAGCCGGGTTATAA	ref_5539_RC	6	14	14	18	11	10	14	7	13	12
CTTACCCGTATTGCGC	ref_5539_RC	20	20	15	17	24	14	20	19	38	11
TATTTTCATATCGATC	ref_5539_RC	0	0	1	0	0	0	0	0	0	0
CGTTCAGAGTGTGGGT	ref_5539_RC	23	12	23	18	16	22	26	21	12	11
GCACTTTTGCAACTGG	ref_5539_RC	61	81	91	86	73	70	78	66	67	67
ATTGTTCAGAATAGCG	ref_5539_RC	19	19	20	19	18	13	27	10	19	17
GGATGTCTATGGCAAA	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
TGTGCGCGTTTTCTCT	ref_5539_RC	15	12	20	18	18	15	13	15	13	17
TCACGGGATTGTTCCG	ref_5539_RC	25	24	35	35	18	26	37	22	28	30
CAAGTATAAAATAATT	ref_5539_RC	127	109	127	106	112	116	129	95	89	91
GGGTTTTCAACATAAA	ref_5539_RC	42	43	40	28	28	51	48	30	34	29
TCGCTTTTCGGAATCG	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
GTGGGGTTTTTTCAGC	ref_5539_RC	18	18	9	7	16	11	19	7	19	8
TTCCTCGTACCCAGAA	ref_5539_RC	21	16	19	17	19	8	23	14	13	13
GGCTTGAATTAAATCA	ref_5539_RC	17	9	21	14	12	12	12	11	13	11
CCCCGCTTTCTCATTA	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
CTGGCCATTTCATCTT	ref_5539_RC	58	60	75	55	63	63	62	59	72	54
TTAAGGTATTTTGCCC	ref_5539_RC	136	161	190	144	158	139	183	153	153	121
GTTCTGATATGCGAGT	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
CCGGTCACGGTTATTT	ref_5539_RC	27	34	41	26	31	33	35	32	34	24
AAAGTCTTGCCCGGAA	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
TTGATCTTCCAGCTTC	ref_5539_RC	1	0	1	0	0	0	0	0	0	0
GTTTATGGCACCTACC	ref_5539_RC	0	2	0	0	2	0	1	2	0	1
CGGTTATGTTTTGCAA	ref_5539_RC	52	64	86	74	75	68	58	61	84	66
CAAGTCCTACCTTGCT	ref_5539_RC	0	0	0	0	0	0	0	0	0	0
TCTATGCCACAGTTAT	alt_929_RC	36	12	40	42	17	26	15	31	12	28
TCGATGGCTGTCTTTT	alt_929_RC	149	68	138	126	74	103	88	79	87	88
ACCCCTGTGTTTTATC	alt_929_RC	264	163	320	343	185	274	198	274	171	262
GCCGTCCCACGCTTAT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TATGGGGCCTCTTGTC	alt_929_RC	57	21	79	74	18	50	19	54	22	49
AGGGATGTCTGGTACC	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TCTACTGAACAATTCG	alt_929_RC	70	26	81	57	17	49	28	50	21	44
TACCTCTAGTTGGCAG	alt_929_RC	169	76	236	189	90	184	70	187	75	162
CTAGCGAATACCAGGC	alt_929_RC	249	97	294	244	89	218	98	209	96	204
TTGTCTTGTTTCCGAT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TTAAATTTCAACCAGA	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TATTGCGGTGAAGCAT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
ATTGCACACATACCGT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
GGTCGCAAATTGCACC	alt_929_RC	0	0	0	0	0	0	0	0	0	0
GTGGGTGCATACTAGG	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TCGTCTATGTTCTTTA	alt_929_RC	117	35	119	124	36	88	43	117	48	98
AGATAAAGAGCCATGG	alt_929_RC	98	38	146	111	56	99	45	103	71	117
CGATATTCATAAGACC	alt_929_RC	17	3	17	15	8	20	11	11	7	11
TATTTCTTGTGCCGAA	alt_929_RC	0	0	0	0	0	0	0	0	0	0
CGGACTAGCCTTTTTG	alt_929_RC	32	6	50	39	16	36	13	25	24	37
AGTAATCGTATGTCTT	alt_929_RC	0	0	0	1	0	0	0	1	0	0
ACGTTCGGTCGGTTAA	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TCCTCGATGAAGTCTC	alt_929_RC	75	37	96	96	42	74	36	88	50	52
AATAGACCGCCACTTA	alt_929_RC	47	25	61	44	17	38	31	42	16	49
CGAAGGGTACCAGCAC	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TAGAACTACGAGAAGA	alt_929_RC	79	38	97	71	30	70	28	71	41	59
CTCTTAGAACTATACA	alt_929_RC	0	0	0	0	0	0	0	0	0	0
ATCATGGAAGTGTTCA	alt_929_RC	486	228	571	507	177	457	224	488	226	401
ATGATCCTAAAATCCG	alt_929_RC	122	53	177	130	27	153	67	134	54	118
TTTCATGTCTGTCGGC	alt_929_RC	0	0	0	0	0	0	0	0	0	0
GTCCGATTTGCACGTG	alt_929_RC	0	0	0	0	0	0	0	0	0	0
ATATAGTCTCAACATG	alt_929_RC	0	0	0	0	0	0	0	0	0	0
GGAGCCGTATTTGGTA	alt_929_RC	33	13	32	31	12	21	11	18	10	17
TTCACCTTCCAGAGGC	alt_929_RC	0	0	0	0	0	0	0	0	0	0
GCTGTTGTTTCACAGG	alt_929_RC	169	89	237	211	100	182	86	201	91	193
CTTCCTCCTTGCCAAC	alt_929_RC	79	30	77	71	28	58	25	74	35	67
ACATTGACACACTTTT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
CCGAGAGTGTCGGCTT	alt_929_RC	103	43	116	99	35	107	42	99	53	95
GTGGCTCAAGGCCTTC	alt_929_RC	18	5	17	19	11	7	7	13	9	10
AAATAGTATTTCCGCT	alt_929_RC	59	27	61	64	41	73	38	60	32	49
GGTCCATATCTTTTTA	alt_929_RC	0	0	0	0	0	0	0	0	0	0
CCTCATAAGAAGGAGT	alt_929_RC	54	20	70	41	31	48	24	40	26	46
GATACTTGTTTTTCTG	alt_929_RC	285	96	359	324	80	276	103	259	91	230
CAGCGTGGGCTTTTGC	alt_929_RC	2	0	10	10	0	10	3	3	2	5
TGTGGTCAAAATTGTT	alt_929_RC	248	103	253	232	115	219	91	215	96	209
TCTCGCAATTGTAGGA	alt_929_RC	193	73	220	222	69	192	60	180	70	168
CATACGGTGGCTGTGC	alt_929_RC	18	4	16	4	4	9	14	16	8	15
CGTGTATTGTGCGTCG	alt_929_RC	557	237	746	664	268	550	261	680	234	524
TCCTGTTAACTGGGCG	alt_929_RC	32	14	41	27	20	23	18	31	25	34
TTATCCAGAGGGCTTA	alt_929_RC	329	126	394	331	175	294	163	313	154	297
TTCGTTGTCGTTTTCA	alt_929_RC	400	151	428	400	176	308	176	376	134	343
TCAATGTACGTAATCA	alt_929_RC	19	7	26	44	18	18	11	29	7	28
CGGCGTGCCGAGCTAT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TGCGGAACGGTTCTTG	alt_929_RC	12	9	8	5	7	10	5	8	7	11
AGTATACTCCCGTAGG	alt_929_RC	32	72	26	21	75	13	81	24	70	21
TACTTCTTTCGAGGTA	alt_929_RC	132	40	161	109	48	140	58	129	67	102
TCGGGTTTGTTAGTGG	alt_929_RC	179	82	244	195	81	185	93	167	92	151
GTGGCTAAAAAACTCC	alt_929_RC	28	37	37	36	26	30	31	36	20	33
CATACTTTTACTCTGC	alt_929_RC	63	26	83	75	29	71	24	67	30	66
TACATTTTTAATTTGT	alt_929_RC	3	5	9	11	2	10	8	6	10	10
CTAGATGGTCCTGGGT	alt_929_RC	140	76	167	155	88	144	80	105	86	134
TGCTGGATCTAGGTTC	alt_929_RC	22	21	35	32	19	28	26	20	27	30
AATAATCGTATGTCTT	alt_929_RC	1035	380	1474	1096	467	1068	437	1043	466	900
TGCTGATCCTGCTTCG	alt_929_RC	0	0	0	0	0	0	0	0	0	0
CCTGTCGGCTTACATT	alt_929_RC	59	31	82	57	40	37	38	55	34	42
TTCCGCACTATATTGT	alt_929_RC	54	23	75	70	21	60	17	63	23	54
AGGCCGTCGCTTGACC	alt_929_RC	113	56	134	120	38	129	49	114	66	86
TTTCTGCGTCTATAGC	alt_929_RC	33	17	39	38	25	43	16	40	25	41
TTATCTTCGGGGTCTT	alt_929_RC	164	68	169	129	54	115	75	103	63	136
TAACGCTGCTTTCGAG	alt_929_RC	247	92	298	246	92	211	110	229	103	204
GGGCTAACGTTACGAA	alt_929_RC	156	74	172	210	76	148	62	176	62	132
TATTAGTCGCGAAGCG	alt_929_RC	69	27	55	69	28	57	24	49	33	51
GCCCGATCCTTCTTGG	alt_929_RC	108	40	123	110	52	113	39	100	44	104
ACTCCTAGCGACCCGG	alt_929_RC	83	41	110	86	38	98	35	88	44	90
ACCTGCCGTTCGCACA	alt_929_RC	250	94	320	292	109	283	114	265	99	210
GTCGGCCACGTCTATT	alt_929_RC	22	10	31	24	19	33	28	26	19	25
TACCCTGTATTGTGTT	alt_929_RC	46	24	61	50	16	42	18	35	29	36
CAGTTTGGCCAATAAG	alt_929_RC	0	0	0	0	0	0	0	0	0	0
ACCAATATGTCTCATT	alt_929_RC	26	13	58	37	9	23	20	39	12	42
TATTCTCGCAAGCCTT	alt_929_RC	50	13	70	67	23	56	34	41	21	44
CATGGTAAAACCGCGT	alt_929_RC	146	68	151	137	62	124	64	140	70	105
AGTACTTCTGTACACT	alt_929_RC	37	35	26	33	25	28	31	30	19	25
GATACTATAACGCCCT	alt_929_RC	187	68	210	218	56	152	59	193	69	142
TGGGCTAACTAGGCTC	alt_929_RC	65	68	76	77	52	52	60	66	88	58
TCTTTTCGCGGATGGA	alt_929_RC	26	12	14	18	10	14	11	21	6	20
TGCATTCATTGGGTTG	alt_929_RC	80	63	101	96	50	91	42	81	26	66
GCCCATTTCGCCTTGT	alt_929_RC	119	60	162	134	40	132	70	124	40	106
CCCAGCACTATTGCGC	alt_929_RC	68	70	86	100	91	70	74	90	66	65
TAGTGAATTCCATCCG	alt_929_RC	0	0	0	0	0	0	0	0	0	0
CTATGCGCAGTTGCTT	alt_929_RC	177	103	217	180	86	157	94	184	97	141
TGCTTTTTCCTTCTTG	alt_929_RC	85	35	143	114	38	92	35	105	48	108
TATTGTGTCAGCTCAT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TCTAACAGTGGTGCTT	alt_929_RC	146	63	181	161	82	155	86	152	93	121
GGAAATTATTTTTAAC	alt_929_RC	119	51	146	130	49	116	46	133	40	110
TCTTTTCTCCATACTT	alt_929_RC	0	0	0	0	0	0	0	0	0	0
TGAAGCTTTATATTCG	ref_13_RC	7	19	15	18	14	12	18	19	32	13
TGCCACAAGCTTTGCG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TTCTGGATTAATCCGT	ref_13_RC	14	17	17	10	16	12	10	17	16	11
ATAGTATCGGGGCACC	ref_13_RC	20	18	22	20	26	21	14	19	11	8
TACCTAGGCTTTGTAG	ref_13_RC	17	31	23	26	32	26	35	23	26	13
AGCTTGGAACTCCAAG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TTCTGTAGCCGTAAGC	ref_13_RC	0	0	0	0	0	0	0	0	0	0
ATGATGTTGTATAATC	ref_13_RC	4	4	12	9	5	6	6	6	8	8
GGCGTCTTCTAAGGCA	ref_13_RC	5	7	8	2	3	8	5	6	5	6
AAAAATGCCCCATACG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
GGCTTAACAACTTGCT	ref_13_RC	187	194	213	177	206	161	183	153	180	125
ATTGACCACAGTTTGA	ref_13_RC	21	28	37	25	43	17	29	16	40	31
GTTAGTTCGTACTCGT	ref_13_RC	120	131	125	111	137	117	118	80	134	92
CGTCTCGATTGTTGAA	ref_13_RC	9	18	9	7	11	5	15	6	10	9
CCGGGAATGGCGGTAT	ref_13_RC	55	54	60	65	36	58	46	46	51	43
ATTTGTTACGACCCAG	ref_13_RC	32	28	36	29	24	21	43	31	33	31
TGAAATTTGGATGTCA	ref_13_RC	0	0	0	0	0	0	0	0	0	0
GTTATGTTTATGAAGG	ref_13_RC	46	56	45	48	33	43	50	45	62	32
CGGGATTATCTGTACG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
GTTGCTTCCTTCGCCA	ref_13_RC	23	18	34	41	26	24	20	32	19	31
TTGTATGAGAGTTTAT	ref_13_RC	3	10	2	2	12	6	6	2	5	3
CAATCTCGTTGTTGTA	ref_13_RC	44	52	56	32	53	44	54	50	60	35
CCATCATGCGCGGTCA	ref_13_RC	15	21	22	21	19	29	20	21	20	20
TGTGCCCGCATATAAA	ref_13_RC	36	27	42	36	40	36	43	37	26	25
TCATCTCCGGGCTTTA	ref_13_RC	83	110	108	102	123	81	125	89	122	120
GGACGTAAGGGACTGG	ref_13_RC	18	23	11	15	23	15	23	18	11	11
CTCTTAGGGCTGTATC	ref_13_RC	50	52	64	40	60	48	55	41	60	45
CCATTTTGATTGTCAT	ref_13_RC	107	75	100	75	84	94	103	89	82	91
GTACTAACTTAAGATT	ref_13_RC	6	3	2	1	7	3	2	1	6	1
CGCGTAGCTAATCAAT	ref_13_RC	78	66	102	83	83	69	94	91	94	76
TTTTTAATGTAACATT	ref_13_RC	2	0	3	2	3	2	2	3	3	3
TAGTCAACTTCGGGTT	ref_13_RC	41	42	35	34	51	27	43	32	50	31
GGAATGCGCGTCTTCT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
AATATTTTAGTCTTGG	ref_13_RC	33	66	62	63	63	50	57	40	50	42
AAGCTCGCACGTACCT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
AATCCCAGGGGGACAG	ref_13_RC	207	151	311	219	181	195	192	193	166	170
TTGCTATAAATTCTTC	ref_13_RC	8	8	12	10	8	4	4	9	10	6
GCTTGATAGTAATCAT	ref_13_RC	10	8	15	10	5	11	15	12	10	10
AGGTCTTGCATTGAAG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TCGTTCTCTGTGACGC	ref_13_RC	16	13	46	16	18	15	12	23	40	23
TTATGATTTTTTGGTT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
GTTGAGTATCTCTATG	ref_13_RC	61	64	76	47	71	53	74	64	85	54
TTGCGTGTCTCACTTC	ref_13_RC	25	33	30	35	28	25	37	32	38	21
ATGGCCGACTCTCCAT	ref_13_RC	17	11	19	28	16	19	16	18	23	13
TCTTGTATCCCCTTTT	ref_13_RC	13	28	18	11	29	26	27	25	48	18
ATGAGAGTCGGCGGCG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TCCGCAGAGGGAGACC	ref_13_RC	49	68	70	62	47	50	79	58	81	60
TCAATACGTTGGCCAC	ref_13_RC	24	21	30	21	13	20	24	12	27	11
TTCAATCTGTCAGCCG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
AGAGTCCGGCGGTATC	ref_13_RC	0	0	0	0	0	0	0	0	0	0
GACCCTATGGAGGCGT	ref_13_RC	5	7	8	3	4	5	12	6	7	4
TCCAACCCATTGTGTA	ref_13_RC	12	6	10	19	13	13	14	13	14	14
TCACTCCGAATTAATG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TCTTTCGGCTGGCTTT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
ATTTTGTTATTCCCCG	ref_13_RC	47	36	39	36	37	39	52	38	41	29
GGTTACCCGCGGGCAT	ref_13_RC	287	305	376	292	335	267	324	259	300	226
TACCCGTTTTTTTCTA	ref_13_RC	4	4	6	4	6	3	4	3	6	3
GCTGCCGCACCATTTT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
CCTGGGTATTCTGTTA	ref_13_RC	3	16	3	3	7	3	8	4	8	3
TACCTTTATCCCCTTG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
CCTCGTTTGCATCCTC	ref_13_RC	40	68	74	45	57	45	69	29	67	37
CCGGTCGGATCCGATG	ref_13_RC	0	5	0	0	7	0	11	0	7	0
TCCTCGTTCGCGACCT	ref_13_RC	16	9	12	13	15	16	27	11	11	11
GTTTGCATTGTTCATA	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TGTAACATTTAGTCTT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TGGTAACCCCTGTAGT	ref_13_RC	10	25	18	16	16	15	28	21	22	12
CGCTGATTTGTGATGT	ref_13_RC	134	175	153	117	197	122	138	128	194	147
TGTTTGTCTAACAAGT	ref_13_RC	11	14	14	21	15	17	17	17	14	18
TCTCTATGCACTATAC	ref_13_RC	0	0	0	0	0	0	0	0	0	0
GATTTCGCTTATATCT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
ATGCCATCTGAGATTC	ref_13_RC	0	1	0	0	0	0	2	1	2	0
CTCCAACAAGCAGTCT	ref_13_RC	20	37	23	21	28	22	30	17	37	20
GAAATATTGTTCTTGG	ref_13_RC	0	0	0	0	0	0	0	0	0	0
AAAGCAAACCCTCGCA	ref_13_RC	0	0	0	0	0	0	0	0	0	0
AGCTTACGAGATATTT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
TTGAACCTTGAGACTC	ref_13_RC	126	123	153	114	136	109	140	130	158	104
TACTGGTGAACGATCT	ref_13_RC	0	0	0	0	0	0	0	0	0	0
ACAGTTTGATCAGTAT	ref_13_RC	44	66	60	32	63	47	46	51	55	45
GGTAGTAGACCATGAT	alt_3356_reverse	59	60	62	51	62	51	58	44	68	45
AAAATGATGCTCGTTT	alt_3356_reverse	1	0	1	2	7	1	3	0	1	2
TCAACTTTGTCTTGTT	alt_3356_reverse	10	14	13	9	17	11	14	12	17	15
AGGTGGTCCTCCTCCA	alt_3356_reverse	8	12	13	14	14	10	13	10	12	11
GGTCTACAGGTACCCG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
GTGATCCCTTAGGCTG	alt_3356_reverse	21	16	14	13	24	17	23	23	38	17
GGTGCCGTTTCGAAGA	alt_3356_reverse	9	10	13	12	8	5	6	11	17	8
GGGTCTATGACTTCTT	alt_3356_reverse	16	17	21	12	21	9	37	22	14	12
GGCGACCGCCCCCGTC	alt_3356_reverse	24	39	25	23	44	20	55	17	41	21
CAGAGGATGTGCCGTG	alt_3356_reverse	12	22	25	7	11	17	22	10	11	9
ATTGATGACAAGCGTA	alt_3356_reverse	23	24	34	25	25	22	27	20	26	28
CGTATTCTAGAACAGT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCAGCGATATTTC	alt_3356_reverse	33	52	45	45	66	32	64	27	55	41
CGGCTAGGGATAAAGA	alt_3356_reverse	15	12	13	7	9	4	12	4	9	14
CCCACTGGTAGGGAAC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAATCTCTCATCG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGGAGTCAGGTTTATA	alt_3356_reverse	7	14	9	5	6	6	12	4	9	5
CTTCTTGTACATCTTC	alt_3356_reverse	9	13	9	4	14	9	10	14	15	10
CGCTACCAGGCGGAAT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCAGTCGTATCAA	alt_3356_reverse	31	61	72	52	64	31	54	32	61	38
CAGGTTCGGATCACGA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGCTACATTCATG	alt_3356_reverse	45	37	55	51	52	31	54	44	38	33
GCCACGGATCAATATT	alt_3356_reverse	25	71	35	38	81	28	75	27	70	34
TTTCACAAGAGATCTA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CGACTTCGCCCCACCT	alt_3356_reverse	13	19	5	9	12	11	14	8	17	8
TCCGCCTTATTGCCTG	alt_3356_reverse	6	12	14	9	14	6	10	10	16	9
GGTCCTCACTTCCAAG	alt_3356_reverse	17	15	14	21	28	17	21	12	20	5
ATCAATGCACGTGTCT	alt_3356_reverse	17	16	24	14	29	11	32	15	26	23
GCAGCATACCGGGCAG	alt_3356_reverse	7	12	8	11	9	6	6	7	9	7
GGCGGGTCGGCAACAA	alt_3356_reverse	16	17	21	15	20	15	17	7	16	7
TTGTCAGTGAGCCATT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TACCCCACTTTTGGAG	alt_3356_reverse	35	49	47	31	33	30	28	24	34	31
CCTTTGTCTACTCCTG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGATTTTCATTGA	alt_3356_reverse	50	59	59	43	60	44	76	37	65	40
ATCTGCTAAACATTGC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
AATGCCCCCGTGTGCA	alt_3356_reverse	22	46	21	24	38	22	29	20	50	22
AGGCAATAATCTACCC	alt_3356_reverse	20	36	36	30	40	36	35	34	46	31
ACTTGGATGCACCTAG	alt_3356_reverse	71	101	81	74	107	54	80	56	116	75
TTGGCCGATAGACCCC	alt_3356_reverse	19	24	18	17	20	22	16	21	24	15
GAATGAGTCGGTGTTC	alt_3356_reverse	9	7	9	11	3	14	13	5	13	10
ATACGCTTTTTTTGGG	alt_3356_reverse	35	27	14	15	26	14	27	21	19	15
CACATTACCAGTACAT	alt_3356_reverse	272	368	386	278	391	285	394	274	452	253
CTTGTAATAACCCAAT	alt_3356_reverse	7	3	4	9	8	7	9	6	7	12
AACTTTGTTTCGGTTA	alt_3356_reverse	4	8	7	8	4	9	10	8	8	6
TCCGCGTTCACTTGTC	alt_3356_reverse	9	2	6	7	2	1	5	4	6	3
TCTTAGAAGAACGTAC	alt_3356_reverse	6	15	10	16	12	11	19	16	19	8
CTGGTTCTTCAGTGCG	alt_3356_reverse	27	22	32	26	23	16	38	28	21	17
CGTGCCGTTAAGCTAT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCTTAAACTTATTTAT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGGTACTCAGTAAGGG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTGTATTTTTGTA	alt_3356_reverse	17	13	17	6	10	6	13	14	13	13
CCGTGTCACAAATAAC	alt_3356_reverse	18	19	19	14	18	15	21	20	26	13
AATCATTGTCCCATTA	alt_3356_reverse	58	68	86	60	91	56	95	60	88	61
CTAATTTGTCAAGTTC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTTATGACCGTGC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCGATGGTGGATTGCC	alt_3356_reverse	11	7	18	19	13	18	24	16	12	20
AGCGACGTATTGCCAG	alt_3356_reverse	80	100	99	87	107	98	113	90	125	106
CCTTTTGTATTTACTG	alt_3356_reverse	60	62	52	61	75	50	83	47	90	41
GTTAATAGTCGATCCC	alt_3356_reverse	21	22	24	22	29	22	25	21	28	15
GTAAAACTGAAGGTCA	alt_3356_reverse	17	8	9	9	12	7	4	9	13	11
AGGTAGCTTACCACTC	alt_3356_reverse	2	6	5	8	13	4	8	5	6	3
TTCGCAGCGGTTTGGA	alt_3356_reverse	22	15	26	18	16	18	20	10	14	9
TTAAAGGCTAACCGAA	alt_3356_reverse	9	7	8	7	8	6	12	6	8	9
ATCAGTGCTGAACAAC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CCCGTGTCTATGGCGT	alt_3356_reverse	6	9	5	11	14	9	16	9	16	6
CGCCGTCTAGTTGCAG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CATACGGTACGAAAGA	alt_3356_reverse	17	26	28	29	26	25	22	28	38	27
ACACGACTCCGATCCC	alt_3356_reverse	21	31	16	21	34	16	32	23	26	30
GACAACCAGCTCTTCC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGATAGGATAAAA	alt_3356_reverse	7	6	11	11	14	6	10	13	16	7
ATTGTTTTTTCCTTTT	alt_3356_reverse	46	42	42	45	43	42	55	53	52	46
TTACCTTCAGCTGGCC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CATGTCGCAATGCCGT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTACATTGGGGAGTAC	alt_3356_reverse	50	52	57	52	61	40	61	50	67	43
TCTTGTCCGGTGGTCC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGAAAGCTGATGG	alt_3356_reverse	11	21	23	22	19	20	24	10	13	22
AATAGCTTACAAGTGC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTTCGTTTTATCA	alt_3356_reverse	31	28	26	22	21	18	44	22	31	21
CTCTTAGTGTTACCTG	alt_3356_reverse	9	13	7	14	21	6	21	7	16	8
GGGTTCTAGCTCCTCC	alt_3356_reverse	0	4	2	1	6	1	4	1	3	1
ACTAAAAATTGCCCTT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	1
GTCAAAGTCGTCGAGG	alt_3356_reverse	19	37	31	30	52	26	39	32	44	27
TATATATGTAACGCTT	alt_3356_reverse	26	28	32	30	30	23	29	33	22	20
GCGTCTGTCAGCTCGT	alt_3356_reverse	9	14	9	9	8	3	6	10	7	2
CCCACTTTTAGAACCT	alt_3356_reverse	7	20	6	10	20	4	18	10	12	7
AAAGTTTCTTTGTATT	alt_3356_reverse	46	49	59	35	80	36	55	28	64	42
CTTCCCTGCAGGCGTT	alt_3356_reverse	9	5	20	10	9	8	12	9	13	5
GGTGATATGGTTGGGT	alt_3356_reverse	24	20	31	20	17	20	30	21	32	20
CCGACTACGCAGAAGG	alt_3356_reverse	12	6	8	5	10	8	15	8	12	8
GGTTAGGCTCTTGGCG	alt_3356_reverse	11	12	8	8	10	5	12	4	15	8
ATGTAATGTGCCCTTC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTCTTGGAGCTC	alt_3356_reverse	32	29	39	36	39	29	46	40	50	36
CCTGCTCCATCTATCA	alt_3356_reverse	26	56	38	34	73	38	56	30	49	31
GGGTAGTCTTATCATT	alt_3356_reverse	40	38	36	26	34	34	56	20	53	19
CTTCACGCCACGCAAT	alt_3356_reverse	34	49	54	47	48	49	50	50	60	48
GTCATACAGACTGTCC	alt_3356_reverse	5	8	2	6	9	4	4	2	7	2
GATCCGCGCCGGGAGT	alt_3356_reverse	86	102	97	92	87	58	125	62	106	75
ATACTTTCTCTAATGG	alt_3356_reverse	3	8	13	9	10	5	10	9	7	8
ATCTTCCGTGTAGTCA	alt_3356_reverse	7	9	11	3	4	2	4	1	3	2
GACGTTTCGGGTCGAT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
GGGATTATTATCGGTT	alt_3356_reverse	37	31	51	48	36	39	37	28	55	31
CGTGTACTGTGATTCG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTACGAGGAACGG	alt_3356_reverse	7	10	13	8	11	13	16	9	16	14
TAGCTTTGTGCTGTGA	alt_3356_reverse	21	23	23	18	16	24	29	25	28	22
TTGTTATGGGAAATGG	alt_3356_reverse	1	10	9	4	5	5	11	4	6	5
GTACTCACTCTTTCGC	alt_3356_reverse	2	12	4	5	9	10	8	9	13	6
CTCTGTTCAGCAGCAT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTATCGATAATCTAAT	alt_3356_reverse	36	35	38	32	35	39	40	34	56	29
CATATAATCTGGCGCA	alt_3356_reverse	40	40	45	51	40	31	40	34	45	28
AACTTAGGCGTTGATC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCGGCGCTGCTAT	alt_3356_reverse	25	35	37	34	26	33	40	26	34	25
TCGCACGGCACTTTTT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
GGTATACTCTCATGTC	alt_3356_reverse	28	25	45	20	32	27	38	21	35	25
GGAATTTAATCTCGGA	alt_3356_reverse	14	15	13	21	24	11	13	18	15	10
TTGCAATCTTTTTTTC	alt_3356_reverse	16	15	32	19	17	11	23	24	12	16
TGCGTATGGCGCCCTT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAGCAAGTGAGTT	alt_3356_reverse	15	28	25	23	26	22	26	21	25	25
ACTACGATACGGATCA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTCGGTTGCATTT	alt_3356_reverse	9	12	7	8	7	6	7	10	7	3
TGAACCGGATGAATCA	alt_3356_reverse	14	16	17	14	14	20	16	11	13	8
TACATTACAAGATATG	alt_3356_reverse	23	27	34	35	31	34	38	50	39	23
GGTTCGTTAATGTAAG	alt_3356_reverse	30	38	28	26	29	27	59	23	50	21
GCACCGAAGCTTCCCG	alt_3356_reverse	5	16	8	11	6	7	13	5	13	9
CAGTTTAACCTTTAAT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CCAATTGGATAGGCTG	alt_3356_reverse	20	23	24	28	24	17	23	19	26	12
TTTTGACCGTTAGTTC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTGATTTGCCTGG	alt_3356_reverse	17	20	34	23	33	20	39	17	21	21
GTAGCACATACCTTGT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAGGTTGAGTGAC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCTTACATTGAAA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCCTCATGTCAAT	alt_3356_reverse	17	31	31	27	26	20	31	36	43	13
TAATGCAATCTTCCGT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTCATTGTTGGAG	alt_3356_reverse	13	16	9	14	21	12	23	9	21	5
TGTCCCGCCCTACCGC	alt_3356_reverse	16	33	19	25	29	22	23	24	43	21
ACAGCCTCTACGAATA	alt_3356_reverse	17	41	26	32	44	31	36	18	38	47
TTCAGCTCTTCGTGTC	alt_3356_reverse	58	47	60	45	60	54	56	47	69	53
ACCGCTTTGATTATTT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CACCTGTGGATTGACT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CAATTTTCCTTGTATC	alt_3356_reverse	14	18	19	14	24	14	27	21	18	13
CCAGCCGTGTCCGGTG	alt_3356_reverse	9	42	24	11	45	12	42	13	46	9
TTCAACCGCCCGTGTA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTCCAATTAAATTGGT	alt_3356_reverse	6	10	12	10	9	5	13	9	11	4
TGCTGCTTTCCCTGTT	alt_3356_reverse	15	10	17	8	17	10	6	6	13	13
TTTCGCCCAACGCCAT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAATTTGTTTCTT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
ACATATTCAAGCTCAT	alt_3356_reverse	4	7	6	1	4	4	5	5	7	4
CCTCATTTCCGCCTTT	alt_3356_reverse	46	36	42	30	44	29	38	33	37	32
GTATAAACGTTATGCA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
ATAATTCACTTGCATT	alt_3356_reverse	3	2	2	0	3	7	9	5	5	5
AAGTATTCGATCCCGC	alt_3356_reverse	33	52	37	38	50	40	51	31	47	29
CCTAGCGCTTATTTGT	alt_3356_reverse	33	43	46	29	66	29	56	35	36	29
GTATGATTAGGCCCTC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAACATGGAGTCG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TATTTACTAATTTCGG	alt_3356_reverse	2	7	4	3	7	3	10	3	16	3
TACAGCTTCTACTGCA	alt_3356_reverse	16	26	17	18	35	8	23	22	28	15
GGCCAGTTTACGCCCG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTGTCTCCGAGCT	alt_3356_reverse	12	10	6	8	9	9	6	10	9	6
TTTTTCATAGAATTAC	alt_3356_reverse	25	24	25	21	25	14	27	16	39	12
GTGTACGCGAGGCTAA	alt_3356_reverse	11	13	19	6	13	6	17	7	12	9
GTTAATTGCGCCGGCC	alt_3356_reverse	8	26	25	12	16	19	29	17	18	19
GCGGTATTAGGCTCTC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTAATGGCTTCCGCAG	alt_3356_reverse	7	5	13	4	6	6	7	12	3	3
CTCGACCTGGTCCGTT	alt_3356_reverse	0	5	0	2	0	3	8	0	3	1
TTTGCTACTCGGATCC	alt_3356_reverse	30	39	40	26	51	41	45	33	41	32
CCGTGATTGGCAGGCG	alt_3356_reverse	6	6	11	15	17	14	11	10	9	9
ACAAAAAATTGACCTT	alt_3356_reverse	0	0	0	0	1	0	0	0	0	0
TGCTTTTGGATTTCCA	alt_3356_reverse	9	8	9	10	16	5	13	12	18	12
GATCGTTTTGATCCAT	alt_3356_reverse	42	73	59	43	51	56	48	43	52	43
GTTCCACAGATAAAAT	alt_3356_reverse	39	52	52	35	51	38	46	31	53	35
TTCCTGATGTTACTCT	alt_3356_reverse	34	51	36	31	42	26	48	33	48	34
GGATCAATCAGATTAA	alt_3356_reverse	12	9	16	9	7	7	17	10	17	6
GGTTGAACGCTCCTCA	alt_3356_reverse	62	65	70	72	78	53	100	72	108	57
GCACTCGGACATACCT	alt_3356_reverse	4	16	13	6	25	7	19	5	15	6
TAGGCTAGACGATTTA	alt_3356_reverse	11	8	14	11	10	9	18	12	14	6
GTCTACTAGGTTTGTA	alt_3356_reverse	8	17	24	10	34	16	19	13	37	16
AGGTTCATTGCTATTT	alt_3356_reverse	65	62	78	43	68	49	67	51	80	50
ATTTCATATTGGCTAT	alt_3356_reverse	13	15	15	9	19	25	25	18	22	17
TGTCTCATACAGTGGA	alt_3356_reverse	12	22	11	7	12	13	21	8	14	15
TGTTTTTTCCGCGCAA	alt_3356_reverse	37	37	34	30	41	35	30	43	40	16
ACTAAAATTGACCTTG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCGCCACACGATAAAT	alt_3356_reverse	51	71	82	53	58	41	84	49	75	65
TACCTAAACAGTAGTT	alt_3356_reverse	38	47	50	44	59	38	47	34	58	32
TCTATAAGACGCTAGA	alt_3356_reverse	2	2	5	2	5	3	4	6	8	5
GCGCCAACTGAAGTTC	alt_3356_reverse	11	24	23	20	22	14	23	3	27	17
ATCAAATGTAACGGGA	alt_3356_reverse	77	75	66	66	81	54	73	48	77	61
TCTCTGAACGACACTG	alt_3356_reverse	48	42	51	41	33	28	54	44	52	35
CTAGTTACTACGTAGT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTCGTCAACCCGA	alt_3356_reverse	12	18	19	18	8	22	29	21	23	6
GCAATAATAGGGTTCT	alt_3356_reverse	30	39	46	40	35	36	44	23	50	34
ACGCGCATTGGATACA	alt_3356_reverse	5	14	13	19	14	14	24	14	21	9
TACGATTGCAGAGTCC	alt_3356_reverse	32	33	22	22	24	15	31	28	35	18
AACGCTGTGGAGCGAA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
AGGTACTGTCATCTTT	alt_3356_reverse	9	5	15	6	10	9	26	11	18	13
TTGATGCGCGTATGTG	alt_3356_reverse	29	35	28	22	35	31	39	16	42	23
ACCTGAGCGCCCGATT	alt_3356_reverse	26	26	22	23	19	26	24	14	20	24
GCCACCGAAGCGCACT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCGCAGCGAATTCCTC	alt_3356_reverse	89	118	103	95	126	85	133	104	146	77
TGAGTTCAATGGCCCT	alt_3356_reverse	15	18	29	14	13	10	15	13	23	16
CTTTCTAGGCGCCCGC	alt_3356_reverse	65	61	61	73	76	52	80	51	90	51
GTCTATTAACTTGGGG	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGCCGTGGGTCTA	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TGCCTGTACTGACCGT	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCGTGGCGTGTCC	alt_3356_reverse	0	0	0	0	0	0	0	0	0	0
AATATAAGCCAACACG	alt_4926_upstream	17	30	17	12	18	15	21	25	24	21
TTACTCGCCGAAACAG	alt_4926_upstream	74	69	77	67	75	60	76	67	69	56
TTTCTTCTTTTGATCG	alt_4926_upstream	63	41	65	58	41	58	45	76	41	57
CAAACATTCTTTTTTT	alt_4926_upstream	21	16	22	23	19	19	15	16	13	19
ATAGTGAATCACGAGT	alt_4926_upstream	7	3	3	9	5	12	8	11	3	7
GAATTCCAGCCGTCCC	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTGTATACCAGTT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TAGCAATAACATTTGT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TATCTAGCCTATCATC	alt_4926_upstream	15	10	11	18	11	15	20	5	12	12
CCGACATGGGCTTAGC	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
ATTTACTATCTTATCC	alt_4926_upstream	74	47	60	81	74	69	65	64	52	64
CGCAATTAAATTAGCT	alt_4926_upstream	23	43	49	38	46	38	46	41	38	35
TCCACTTTTGGTGTCA	alt_4926_upstream	91	81	135	86	73	57	72	71	95	95
CTGTTACTGCTGTCGT	alt_4926_upstream	7	6	6	11	4	13	2	12	7	6
TCCACCGAGTGGTTTG	alt_4926_upstream	106	108	127	85	112	95	102	109	117	88
GAGATTTGCCATCTCA	alt_4926_upstream	28	33	29	22	27	30	25	28	27	20
TTCTAATTTGGATAAT	alt_4926_upstream	30	24	45	48	24	33	28	48	29	20
ATTTGTCTGCCCGGCG	alt_4926_upstream	85	60	83	79	51	83	53	71	72	75
CGAATACGATTATGAG	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCATCGTTTTTAT	alt_4926_upstream	114	65	95	82	56	74	77	70	60	82
TCTACAGCGCCAAGCA	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TACAGGCGTTGCCGTT	alt_4926_upstream	9	11	16	10	11	9	5	9	10	17
TTCACGCACAGCTGCG	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TCACTCATGGAGAGGA	alt_4926_upstream	66	61	76	96	53	83	54	87	62	67
CTTTACGGTTAACCGT	alt_4926_upstream	101	62	93	79	73	85	80	76	65	63
GTCAACTGCATGGTAG	alt_4926_upstream	13	11	16	6	8	14	11	7	13	3
ATTGTTTGGATTGACG	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCTTAGATTCTAA	alt_4926_upstream	21	22	19	19	16	13	20	17	28	12
CTTTGTCGTATGCTAT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCCCTACATGCTG	alt_4926_upstream	38	29	46	26	41	54	24	30	44	26
TGTTGTGTTTCTATCC	alt_4926_upstream	17	8	21	11	8	3	10	14	15	10
CCTTATCAAGCTAGGC	alt_4926_upstream	7	4	17	11	6	8	10	6	13	11
ATGCAGAACTGCAACT	alt_4926_upstream	17	25	31	20	16	21	20	18	16	16
GGCCAGATGTATACGA	alt_4926_upstream	6	6	15	11	5	13	11	6	15	7
TTCATCCGCAATCTCT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
GCGTAAATAGGCTCAA	alt_4926_upstream	9	12	8	18	14	6	13	12	13	7
GAATTCCAGTACAACC	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGATCAGGTAAGT	alt_4926_upstream	0	5	0	0	5	0	1	0	9	1
TTAAGCAGGACCAAGA	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCCCGACTTCGTA	alt_4926_upstream	83	63	89	77	79	80	58	66	99	68
ATCATCCTTATAATTA	alt_4926_upstream	38	38	63	60	56	44	62	44	65	28
GCGATAACACGTCGTC	alt_4926_upstream	28	19	27	37	20	27	18	23	27	31
GCTTCTCTACTGGTGT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
CAAACGTCGCCCATAT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGTTCGGATGCCA	alt_4926_upstream	12	14	7	26	16	22	11	15	19	21
CACCTAATAGTCCCTG	alt_4926_upstream	28	36	36	34	32	24	26	22	41	37
AGATTGTTAAGTCCTG	alt_4926_upstream	36	15	26	27	31	37	28	32	20	20
TATCTTAGTCGCCTGG	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGGTTCAGATGC	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGTGCCGCCAAGT	alt_4926_upstream	140	88	182	162	96	144	112	150	131	102
CACAGCAACGGTTAGC	alt_4926_upstream	19	23	22	13	17	23	15	29	15	16
ATTCGGGCTTCGCGCC	alt_4926_upstream	33	26	36	33	20	25	34	27	30	21
GTGTCGTTACAAATAT	alt_4926_upstream	34	40	53	35	22	41	39	31	35	43
AAGTTGGCAGCTGTTG	alt_4926_upstream	32	22	31	23	24	25	20	28	25	25
TCTTGTGTAAGCTTGT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTACGTCTTCGTC	alt_4926_upstream	94	62	119	75	53	70	69	104	64	78
ACGGGTGTCCGGCGAG	alt_4926_upstream	26	25	33	32	19	28	26	31	21	28
GATCCACACTCTTCCT	alt_4926_upstream	39	27	33	44	29	25	31	44	36	33
TTCAATTCTTAGTACC	alt_4926_upstream	21	37	27	32	48	23	35	38	34	23
TTTTCCTTGTCGGAAG	alt_4926_upstream	227	245	271	217	234	213	284	209	294	181
TGGGTTACTCGCATTT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TACTACCCTTAATGTT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
AGCCTGACCGAGCCTC	alt_4926_upstream	47	56	70	58	52	57	65	54	56	41
TCAAGTGGTGCGTCGT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
GGACACTTAGGTTTCT	alt_4926_upstream	38	32	42	47	33	44	33	43	37	38
TCCTTTTAGGGACAGA	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
AACCCTATGATTCCAG	alt_4926_upstream	33	23	31	31	33	32	17	22	16	27
ACTTGATGTTACGTCT	alt_4926_upstream	25	20	45	33	24	29	29	21	27	26
GGGAATTGGCTTTTAA	alt_4926_upstream	102	56	109	98	73	90	70	95	88	83
AGACTCTTAATAGTAA	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTTTCTGCTGGGG	alt_4926_upstream	48	51	61	56	43	56	44	49	37	54
TAATTGAAGGGGTGAG	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTCATTGTGTAG	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
ATACCAAGATATTTCT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTAGAAACGTTTA	alt_4926_upstream	30	60	48	42	47	44	48	31	43	37
TTCTGGGGCTTGGTGC	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTCAGCTGGTGT	alt_4926_upstream	15	16	20	19	12	21	13	18	10	20
CAAGTATTTATACTTA	alt_4926_upstream	14	25	25	22	24	16	11	24	17	19
CGTTAGTACACCTTTG	alt_4926_upstream	6	15	11	15	15	10	12	7	12	8
AGTTGGATAAATTGTT	alt_4926_upstream	28	27	34	34	24	29	37	34	34	22
GGTTACGCTTACTCTC	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGATATCTTTTAT	alt_4926_upstream	0	0	0	0	0	0	0	0	0	0
CGGACATTTATCAGTT	alt_4926_upstream	97	76	75	90	64	71	72	80	90	92
CCTTTAAGTGTGTACA	alt_4926_upstream	81	164	107	108	150	98	118	87	146	77
GAGAGCCCGGGTATTT	alt_4926_upstream	8	8	17	7	7	11	3	10	6	10
CTGTCGCTGTGGGAGC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CGGCCCCGCTTGAGAG	ref_3554_RC	25	20	32	31	33	29	40	22	32	19
GTCTCTCTCTTTTTCT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
GGGCATCGGAACCTTT	ref_3554_RC	7	23	8	19	8	4	23	17	17	10
GACCTACCTATCATCT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TTTGTTCGTCAATACT	ref_3554_RC	51	65	67	57	63	49	84	54	69	46
TCAAATGCATCCTCCT	ref_3554_RC	110	119	138	97	102	88	145	87	151	100
TTGCTAGGATTTCTAG	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ACCTCATTATAGGAGA	ref_3554_RC	4	9	7	5	9	7	9	2	3	4
GGTAAGCGTCTAGGTT	ref_3554_RC	214	239	262	195	245	192	235	199	289	184
ATTCTCTCTGTTCATG	ref_3554_RC	21	14	16	21	20	17	23	21	30	12
AGTCTAATTGCATTGA	ref_3554_RC	51	50	64	44	50	38	61	46	59	39
ACACTTTCATCGGTCC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ACTCTCGTCCTTTCGA	ref_3554_RC	16	23	16	17	21	14	19	12	15	13
GCCGAGGGCCTTCTCG	ref_3554_RC	1	0	1	1	1	2	0	2	2	1
CAAGAAACGCGGTATG	ref_3554_RC	22	34	34	24	41	33	32	31	39	35
CTTAAAAGTTGCTCAA	ref_3554_RC	13	21	9	22	26	5	23	9	15	14
TCGCCTCCAGCGCCTC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ACCTCCTAGTGCAGAC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TCATCCCGTGTGCCTC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CGATTTTCCAAGCAAA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TTTGCTCATAGTATAT	ref_3554_RC	3	7	4	3	5	3	2	2	4	5
AAGCTCTAGCCCGCTA	ref_3554_RC	15	20	19	15	21	14	18	13	29	12
TGACTTCCCATTAGAT	ref_3554_RC	0	2	3	1	1	4	1	3	2	1
GGTGGCTCTCTTCCTA	ref_3554_RC	33	50	31	28	45	33	49	42	37	35
CGAAGGTAATTCGACC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
AACACGCCTAACCCCC	ref_3554_RC	34	44	31	35	35	27	36	37	46	22
TCTGATATGTCTTTGT	ref_3554_RC	52	46	71	41	50	24	45	53	64	46
CTGTCTCCAGTCGATT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TTCTAGTCTCATTCCG	ref_3554_RC	63	69	70	62	85	62	87	60	96	57
GCAAAACGTCGGACGC	ref_3554_RC	7	10	5	7	10	4	21	7	10	8
ACTAGGGGTATTTTTC	ref_3554_RC	21	28	30	26	19	31	30	23	25	21
TATTGATTTGGTTTTA	ref_3554_RC	7	15	18	11	8	10	14	6	14	11
CTAGCGATAGGCGGGC	ref_3554_RC	6	8	7	3	5	4	7	5	8	6
CCACTGTAGTATAGAT	ref_3554_RC	42	97	51	50	95	56	80	49	96	49
GCGTTCTTTGTTCCAC	ref_3554_RC	16	25	32	20	20	15	16	8	24	23
CGTATCTAGGCGGCCC	ref_3554_RC	12	13	19	11	19	25	14	11	24	19
CTGGAGATTCGGGACT	ref_3554_RC	16	15	31	23	31	12	16	18	33	19
TACGTCCGCCGCAGCC	ref_3554_RC	10	17	10	11	15	5	13	11	17	13
TCGCTCCATCAGTGTT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TCAGTTCTGCCTAATT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TACTCAAATACATGTC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ATTCTCCATCCTCCCG	ref_3554_RC	7	4	3	7	5	1	5	6	10	5
CGCGATGTTCGGGATA	ref_3554_RC	35	43	54	56	48	41	47	39	44	26
CTCGTTGCTCCAGTCC	ref_3554_RC	16	24	23	27	21	12	23	15	30	17
GCGGAATTTTTTATGT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TGGTTAGATTCATGGC	ref_3554_RC	60	61	82	52	52	61	61	57	72	53
CACTTCTCGTCACGCA	ref_3554_RC	4	4	6	2	9	5	7	4	6	1
CTTTTAAGAAGGCAAC	ref_3554_RC	14	10	9	8	8	5	13	11	8	9
TGGTGAAGCGCCGCTC	ref_3554_RC	21	26	28	21	20	19	20	16	21	19
AGTTAGATCCCGACTA	ref_3554_RC	37	49	27	23	68	52	47	34	44	26
CGGCCTCCAATCATCG	ref_3554_RC	7	3	7	9	10	5	5	4	7	6
TGTCTTAGGTCAGTCA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CCAGATTCTGGGGAGG	ref_3554_RC	5	7	5	6	10	5	3	6	6	6
CTCCGAGCGACAGGCA	ref_3554_RC	17	21	19	24	15	17	21	17	27	15
TGCAATCGCATTCATG	ref_3554_RC	3	2	2	1	2	4	0	2	4	0
ATGCTACGGCGTTCTA	ref_3554_RC	20	16	19	18	18	15	21	13	21	18
ACCCATTTTGGTCCAA	ref_3554_RC	11	14	5	6	21	10	10	9	21	11
CCAGCCTGTTTATTGC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CCTCAGTGTGCCTGGT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CTACCGGCTCATGCTC	ref_3554_RC	25	44	45	25	34	19	31	29	32	29
AGTACGTGCCACCTAA	ref_3554_RC	14	14	18	6	21	13	20	10	22	8
GCTGTATCGATAATTA	ref_3554_RC	12	6	12	14	7	6	9	3	3	10
TTCGCGCCGTATCGCT	ref_3554_RC	31	29	41	39	37	47	38	29	43	40
ACCTCTGTTCGAGTCC	ref_3554_RC	17	22	13	13	24	11	14	16	24	16
AGCCATATCTTCTCGC	ref_3554_RC	16	16	16	17	20	12	15	13	25	7
AGTACTAGCTGTCGTC	ref_3554_RC	148	186	162	147	183	130	220	156	236	120
GTGCGGCAGGATACAC	ref_3554_RC	10	17	9	12	17	7	6	12	11	9
TGAATTGCTCTAAGGG	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
GGCCCCGATAGCTTGA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
AAGCTAATACGTATAA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TATGGTTTCAAATTAT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
GCGTTGCGGGAATTGC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CTGGATTACTAACCAT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TCTTCTATGATATGTA	ref_3554_RC	26	23	15	24	32	22	37	22	33	14
GTCGCCAAATCCCCGT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
AGGTTTATTGTATTTT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TAACTGATGACAAACT	ref_3554_RC	71	75	75	67	58	70	77	67	83	65
ATTCCATAAGTGGGCT	ref_3554_RC	58	63	82	57	78	63	95	75	65	49
AAGGGCATCCATAGGG	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TGTAGTAGGATCTCAC	ref_3554_RC	36	48	39	33	29	38	41	36	38	19
TTTGAGTCTGCCCAGT	ref_3554_RC	16	39	31	32	41	31	40	27	18	26
CCCCAACAGGTTTCCC	ref_3554_RC	2	2	3	0	0	1	4	0	3	0
TATGTAGATGCGCTTA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TGAATATAATGCGATT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
GTTAAAACGATCTATG	ref_3554_RC	91	91	114	91	100	86	128	80	132	65
CTGCGCTCACCTATCT	ref_3554_RC	18	31	17	29	32	24	37	14	32	18
ATCTGTTATACTGTGG	ref_3554_RC	2	8	6	2	0	3	3	0	2	4
ATGAAATGATCTCCTT	ref_3554_RC	19	14	20	20	14	17	22	17	23	13
GGTAGTTGCAGCTGTA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TCTAGATCACCGTGAC	ref_3554_RC	2	1	2	4	3	1	2	1	2	1
TATGAGCGTATTGTTT	ref_3554_RC	46	55	70	52	51	29	53	51	52	37
TATGTGTGCATAGCTT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ACCGATGAGTGGACAA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TGCACCACTGAATCCG	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTGCTGCGTATG	ref_3554_RC	25	46	35	20	42	20	44	26	34	10
GTGACAGTTCTTGACC	ref_3554_RC	51	79	82	69	85	60	91	68	97	52
CCTTCTATTAAACTTA	ref_3554_RC	34	58	41	53	67	50	66	38	84	43
ACTTCACGGACACTGA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TTCAACCTTTCGTTAT	ref_3554_RC	85	97	100	96	96	84	100	99	109	85
GCTGTTATGACCTATC	ref_3554_RC	23	25	25	20	18	17	21	17	23	13
AAATTTAGACCGGTTC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CGATGATTTCTCTCAT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ATTTCACAGTTTCTTT	ref_3554_RC	54	78	84	73	53	52	94	55	74	49
GCTCTGGCTCCAGACA	ref_3554_RC	129	139	150	131	159	123	146	113	161	137
TGACTACGTTTGGTTT	ref_3554_RC	35	45	61	26	33	37	50	34	54	35
TTTAGGATAGCTTCGC	ref_3554_RC	10	8	3	7	8	6	2	2	6	7
TGAGTGTAGTTTCGCC	ref_3554_RC	201	89	199	185	107	148	116	147	119	154
ATCGTCACCGGTTGTA	ref_3554_RC	5	10	9	4	4	3	6	4	10	9
GCTTCAAACAATCCTG	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TATTCCTTATTGTTCT	ref_3554_RC	33	27	42	32	32	40	47	18	27	22
TTCCCAACGCTGTTAA	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
GTTGTGTTGGCCACAA	ref_3554_RC	13	32	19	20	21	21	17	21	21	19
GTATGACCGCAAATAA	ref_3554_RC	1	3	1	1	1	2	1	0	3	3
TTTTCACAGGATCTAC	ref_3554_RC	22	32	37	21	25	20	28	26	38	21
AGTCACCTTTTGACTT	ref_3554_RC	4	19	2	4	8	7	15	2	13	2
CATAAAGGATTTTGGT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CTGTCCCTTTTTTAAC	ref_3554_RC	4	12	13	7	12	2	9	6	3	8
CTCAATCGGTTATTCC	ref_3554_RC	9	16	6	5	19	10	9	13	15	10
TGCCTTTTTGTTGCAA	ref_3554_RC	22	34	26	20	18	15	43	10	23	17
CAGTTTACGTTTCAAC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ATAGCACTATATGTGC	ref_3554_RC	9	5	6	4	5	7	12	9	5	2
CCGCACTTGTTCCACC	ref_3554_RC	67	66	68	49	62	60	66	50	77	48
CCATACGTTCCCCGCT	ref_3554_RC	13	65	19	21	52	6	72	22	52	14
CAACATAATTTTTGAT	ref_3554_RC	0	0	2	0	0	0	0	0	0	0
CCAGCTTACACCAGTC	ref_3554_RC	0	6	6	3	4	2	8	2	6	2
ATCAAAAGAGCTGGTC	ref_3554_RC	18	26	36	13	28	28	20	18	44	21
GCCTCACAACTTACCT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TGTGAGTTTTCCCTCG	ref_3554_RC	9	11	14	13	16	14	17	9	24	24
TCTAACGCATTTCATC	ref_3554_RC	107	121	136	142	140	94	123	107	143	107
AATGGCGTACTAGGTG	ref_3554_RC	1	2	8	4	2	4	2	5	4	0
TATCTAGTCGAATTCC	ref_3554_RC	0	2	0	0	1	0	2	0	0	0
TCCTGTTACATTTGCT	ref_3554_RC	44	42	56	45	35	33	53	32	47	32
CTCTTACGCTCATTTT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TGCAGATTGACGCAGG	ref_3554_RC	24	33	31	27	34	28	34	14	29	26
TACGGTCAACGTATTT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
GCGGTTATCTCTAGCA	ref_3554_RC	20	21	29	9	21	16	29	24	20	12
GAAAACGTATTTTGTG	ref_3554_RC	48	51	64	48	62	33	55	39	61	55
CTCGCTCTTTTTCTTG	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CCCCCCAGTTACCGGT	ref_3554_RC	31	43	50	44	50	47	67	30	56	22
GATCCTGTTGTGAAGG	ref_3554_RC	5	13	13	13	14	8	16	8	16	10
GCCGGGGAGTACAGGG	ref_3554_RC	16	14	21	19	20	16	16	14	27	16
GTGGTTTTTCTCGTCT	ref_3554_RC	16	14	37	26	19	20	20	11	22	12
CGGACTACGTCTTCCG	ref_3554_RC	43	40	56	51	51	36	45	43	60	40
CAATGCTCTTCGGAGT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
CACGACTAGGGTTGAC	ref_3554_RC	65	60	53	75	76	57	77	60	94	54
CGTCTCACTCGGTTTT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TTGCACTGCGCAAGTC	ref_3554_RC	16	22	19	11	21	21	21	10	19	25
GTCAGGCTTACAGACG	ref_3554_RC	5	9	8	6	12	8	10	13	21	5
CTACTCGACATCTCTC	ref_3554_RC	37	54	75	41	41	50	54	48	53	49
CCATTTGTGATCAACA	ref_3554_RC	3	4	2	1	2	1	5	1	1	3
ACTGAATCAGAAGGGC	ref_3554_RC	47	68	54	52	67	71	100	48	69	39
AGGTTAGGTATCTTAG	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
TCATCTTTCTTCCAAG	ref_3554_RC	13	9	14	11	19	11	6	5	12	11
TTTACACGTCTCGTTT	ref_3554_RC	7	17	13	12	16	6	8	11	11	6
GCCCATGCGCCGTTAA	ref_3554_RC	99	155	130	138	140	87	125	104	136	94
ACTTCACGGCCTACAT	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
ATTCGTCAGTGCCTTG	ref_3554_RC	17	18	23	19	20	13	20	13	11	21
TCTAATACTGTTCCAC	ref_3554_RC	19	21	14	10	37	12	26	13	25	11
TTCACGCAACCTTGTG	ref_3554_RC	3	10	5	4	7	5	7	8	7	5
TTCCTAATTCTAGAAC	ref_3554_RC	0	0	0	0	0	0	0	0	0	0
AGCTTCCCGCTTGTTT	ref_5634_new	0	3	0	1	2	2	1	0	1	0
CCGGAGCGCAAGACTA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CTCCTGCGGCATTCTG	ref_5634_new	6	7	5	3	8	6	6	3	14	4
TCTTTTACTTCTGCTC	ref_5634_new	1	1	2	1	3	1	2	0	3	0
AAAGCTAGAAATGGCC	ref_5634_new	2	3	3	4	11	0	3	4	5	4
AGTACTCATTGGTAAT	alt_5634_new	10	17	5	22	19	14	27	12	20	9
TCGGCACTGCTTGTAG	ref_5634_new	1	0	1	2	2	1	2	1	6	0
TCTATTAAATAATGTA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CCCCTGCTGCTTGTGA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
ACACGCCTTACGTTAA	ref_5634_new	22	19	25	18	32	10	15	17	24	17
TCCCGGTACGCAGCAT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
ACTCACGTCTATGCCC	ref_5634_new	2	2	1	1	4	0	2	0	2	0
CCCTGACAAGCAGTAG	ref_5634_new	0	0	0	0	0	0	0	0	0	0
TAATTATGATTGTCAG	ref_5634_new	2	6	3	2	2	1	1	0	7	1
ACGGAGGATCGTAACG	ref_5634_new	0	0	0	0	0	0	0	0	0	0
AGCTACCCGTTCCTCT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GCGGCCTCGAATTACT	ref_5634_new	7	7	6	6	10	3	5	5	12	9
TGGTGCTGACTCCGAA	ref_5634_new	5	3	2	1	3	2	3	2	2	4
CGTAAATTTTTTGTTA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CGGCCAAAGGACATCC	ref_5634_new	0	3	0	0	2	0	4	1	3	0
TCCTCGAATCGGGGCA	ref_5634_new	2	7	3	3	5	2	11	3	6	1
GGTGTCGCGTGCACGT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GCTCGCTGTTGGATTT	ref_5634_new	6	3	1	0	3	1	3	2	2	1
ATTAAGCTTAGCCATG	ref_5634_new	0	0	0	0	0	0	0	0	0	0
TGTAGACACCTAACGT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GGTCTGGATGGTGCGC	ref_5634_new	1	5	2	0	6	0	5	1	3	2
CATACTGGCAGATTAG	ref_5634_new	14	14	14	12	25	17	15	12	13	8
AGCTCGCGTGTAATCT	ref_5634_new	9	12	17	7	13	8	28	9	22	13
GGGTGGTTTCCGAGGA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CTCGTCAGTTTTGTAT	ref_5634_new	5	3	2	0	3	1	7	5	3	2
CCGGTCTGGTATCCCC	ref_5634_new	1	0	1	1	0	0	0	0	0	2
TGCCCGTTCTGACTGT	ref_5634_new	1	4	1	1	6	1	5	1	6	0
TCCCTTTGGTTCACGA	ref_5634_new	7	5	5	3	7	1	2	4	5	0
ATTAAGGCTGCGATTC	ref_5634_new	11	23	13	11	13	20	32	18	27	15
TTACTCGCTGCTCTCG	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CACACACCCTTCAGAT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GGTCCGATGGGTGCAA	ref_5634_new	22	51	24	23	30	23	31	22	30	15
AGCCTATTCATCAGTT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
TTTTCCTACCTTTTAT	ref_5634_new	1	3	4	3	4	3	10	2	4	0
GTCGCCGTAGTAAAGT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GTCCAACTTCCCTGGT	ref_5634_new	5	4	2	6	5	2	6	3	7	6
GTTAATCAAGACGATC	ref_5634_new	7	7	15	2	2	3	5	4	10	4
GCTTTCCAATCTCTTT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GGAGCATCTTAAATTC	ref_5634_new	8	13	7	6	10	4	14	8	10	15
TTTTGAGGCAAGAGGG	ref_5634_new	1	3	2	1	2	6	4	0	2	3
TCTTTAGGCCGTTATG	ref_5634_new	7	6	7	9	15	11	14	6	22	5
GTGGCCGTCACCGACC	ref_5634_new	3	6	6	1	14	4	15	2	10	6
CCTTCCCTCTCAAGGC	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GTACACCGTTTTGTAT	ref_5634_new	0	3	2	4	0	2	5	1	1	1
AATTTAGCTGATCATC	ref_5634_new	1	2	3	1	4	4	5	1	2	4
ATTCTACTCGCGAGAT	ref_5634_new	2	5	4	4	2	1	9	3	15	6
GGTCAACTCACTAGCT	ref_5634_new	6	9	6	3	4	7	5	3	6	2
CAGGCGCCTGGTACCG	ref_5634_new	0	0	0	0	0	0	0	0	0	0
TCAACTTTTCGAAGCG	ref_5634_new	5	19	6	4	21	9	14	7	16	10
GCCTTAACGTGGTCTG	ref_5634_new	3	16	8	10	17	8	5	10	13	6
ACGGTATCCAGGTTTC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TCACTAGACAATTTAC	ref_5634_new	14	35	15	23	22	16	24	15	35	19
GGCTTCATTTGGCAAG	ref_5634_new	3	3	4	1	3	4	2	1	5	4
AATACCTTTAGGATAA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
AAATCGACAGTTCGCC	ref_5634_new	0	0	0	0	0	0	0	0	0	0
AACGTCCTCGTTCTGG	ref_5634_new	0	2	2	0	6	3	3	2	1	2
GTGTAAGGTGGTAGGT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
TGCACGGAGCAATCTA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CTCGTCTTTGACCACG	ref_5634_new	14	34	10	12	24	14	21	18	26	17
CACTCCGTGGTTCAGT	ref_5634_new	0	1	0	1	1	0	0	0	1	0
CTTGATCAATGCTTTC	ref_5634_new	0	0	0	0	0	0	0	0	0	0
GTAGGTGCGCTGTAAA	ref_5634_new	8	12	5	3	9	5	6	10	9	7
ATTAATGACTCTGTAG	ref_5634_new	4	2	1	3	8	5	5	1	6	5
AGCATTTAATAGAGGG	ref_5634_new	19	19	20	22	19	21	47	18	31	17
CCCATGGAATCTTCGC	ref_5634_new	0	0	0	0	0	0	0	0	0	0
TCCGAGTTTTATTTGG	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CTTTGCCTTCGGATGG	ref_5634_new	8	4	4	3	4	1	13	3	10	6
CCCTGCTGTCAATTAA	ref_5634_new	5	17	7	7	16	5	19	4	17	6
ATTATGCGTTTGGTTG	ref_5634_new	2	0	5	2	2	1	5	0	6	0
GGAGCCAGCTATTGTT	ref_5634_new	1	9	8	4	12	7	4	4	10	6
CTCTTATACTTTATGG	ref_5634_new	7	12	11	1	9	7	9	5	12	0
ATAGCCTTGCACACAA	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CCATCTACGCGAGTTT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
TCGGACTTATAACGTG	ref_5634_new	0	0	0	0	0	0	0	0	0	0
CGGCGAATATTCTTGC	ref_5634_new	2	2	0	1	5	0	3	0	2	1
CCTTTTGAGAACGAGT	ref_5634_new	8	24	12	7	10	11	10	7	17	14
TCTTATCCTGGGATTG	ref_5634_new	1	8	1	5	1	4	2	3	7	1
GCAGACGGAATGTGAT	ref_5634_new	0	0	0	0	0	0	0	0	0	0
ACATTATTTTTGGTAG	ref_5634_new	3	7	2	8	6	4	6	4	7	2
GGCGAGTTTGGGTGCG	ref_5634_new	7	12	14	5	11	9	10	6	18	16
GGTGCTTACACATTCA	ref_5634_new	0	3	0	1	6	0	3	0	1	2
TTGCGTTATCGAAATG	ref_850_fdr	126	88	131	138	106	125	109	120	130	118
ACGCTCAGTGCCATGG	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
CTATTGGCCTTAAGAG	ref_850_fdr	79	97	103	68	86	59	101	52	79	63
GCACTACCCGTCTAAT	ref_850_fdr	0	2	1	2	3	1	3	0	2	0
CCCAATGATTCGTAGT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
CTTTAACTAGACACCA	ref_850_fdr	79	68	95	85	72	80	84	72	73	66
TCTGGGCGACGACTTA	ref_850_fdr	161	128	194	142	135	150	162	150	144	159
CGTACTTAAGCTCCCA	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
GGCCACCACCTAGCAC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTTTACATCCCAA	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
CACGTAGCCTTAATAC	ref_850_fdr	19	18	10	10	15	9	13	15	19	11
ATTAGCCCTGTCCACT	ref_850_fdr	14	21	27	14	19	20	17	16	21	15
CCGTGATAGCCTCGCA	ref_850_fdr	107	87	132	111	121	103	128	113	110	118
GTATTTCCCTTTGCTT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
CATTGATGTCTCAATC	ref_850_fdr	21	26	33	22	25	35	23	29	26	24
GTATTTACCCATCCAC	ref_850_fdr	6	12	10	14	7	4	15	8	10	11
CATTATCCTTGCGGCC	ref_850_fdr	4	20	11	13	8	13	25	10	12	9
GTTCACGCTACCTTGA	ref_850_fdr	17	11	25	33	25	16	27	29	22	15
TACTAAGTTCGAGTGC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTGGGGTTTCTC	ref_850_fdr	21	17	21	16	27	11	22	19	15	15
TTTCACTCGCGCCTCG	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
ATACAGATCATATGAT	ref_850_fdr	14	9	17	10	5	3	5	9	9	5
GATCTTCGTCCAGGAT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
CCTCTCTAACAAGATG	ref_850_fdr	17	17	10	9	18	9	14	8	21	9
CGGGCATTTAGGGTTC	ref_850_fdr	32	22	32	45	27	27	17	31	21	16
CTTTAATCGTCCTATT	ref_850_fdr	64	82	91	50	65	52	53	65	65	63
TCTCATCTGAAGCCTC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
ACGCATTATCATCTTA	ref_850_fdr	55	62	69	67	44	52	56	54	61	49
CCTACGGTATGCCCGT	ref_850_fdr	94	84	119	100	104	74	87	93	102	99
GAAAGATACAACAATT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
TGACATAATTGGAATT	ref_850_fdr	181	105	189	153	110	137	108	115	77	133
TCCCATGCTCATCCTT	ref_850_fdr	8	10	8	3	9	11	13	5	10	4
CCGTAGTGGATCCGTG	ref_850_fdr	37	39	50	30	32	43	39	40	25	33
TTGTTAACTGGTTTCT	ref_850_fdr	317	252	356	295	245	300	267	279	270	271
CCGGACCTCGTGTGTT	ref_850_fdr	31	117	46	28	103	33	141	22	139	28
TAATGTGTCTGCCGTC	ref_850_fdr	35	35	53	40	34	47	45	35	40	41
TATCTTATCTGTCCGT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGTTCCTCACGGC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGTAATGAATCCG	ref_850_fdr	7	13	21	24	21	21	16	16	17	11
CCAGTCTTCACCTAGT	ref_850_fdr	8	55	10	8	53	4	59	4	53	4
TTCGTTCGTTCTAAGT	ref_850_fdr	58	58	83	62	65	66	76	57	76	47
CCGGAGATGTTATCCA	ref_850_fdr	47	40	59	40	35	31	46	28	43	44
TTGAGCGGACCTTTTC	ref_850_fdr	132	151	195	156	185	139	176	167	151	139
TACTGCTATGTACCGG	ref_850_fdr	64	49	81	59	87	81	67	57	64	72
GTTGGTCCCCGGCCCT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
GGCTACTCAGTGGGCG	ref_850_fdr	1	3	2	4	2	1	2	2	2	0
GTGTTCTAAATCTCAT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTCAGTGTTTTC	ref_850_fdr	28	28	37	24	23	26	30	28	29	34
CGCTAAGACTGCTTGT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
ACCTATGATCGGACCT	ref_850_fdr	29	26	33	32	18	21	33	29	31	36
TGAATTTTGTTCGATC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAAACCTATATCT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGCTACAATTCTT	ref_850_fdr	26	14	23	19	18	31	8	12	10	18
AGCGTGATAGACTCAC	ref_850_fdr	46	20	39	54	37	40	33	34	30	41
CTAGCTTCGCCCTTCA	ref_850_fdr	10	19	23	8	20	11	10	12	34	13
TGGATTAATTTCATTG	ref_850_fdr	9	10	11	7	9	12	8	4	9	8
CAACGGCCAGAAATTT	ref_850_fdr	28	38	38	35	34	22	35	22	42	12
CGTATTCAACCCCATG	ref_850_fdr	97	92	119	111	66	91	96	107	84	99
CCTTGGCTTCTGCTAC	ref_850_fdr	20	63	15	15	69	12	62	10	86	25
CAAGACCACGTGCGTC	ref_850_fdr	22	8	14	9	18	11	17	22	12	7
TACATACGAGAGATTC	ref_850_fdr	5	1	2	5	7	7	5	3	5	2
CGCCGCTATTCCGCCC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTTACATTATAGG	ref_850_fdr	55	55	62	46	49	53	55	45	65	63
CGCTGATCCCTGCGGT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
TCCATTATTACTTCTC	ref_850_fdr	43	31	77	46	45	46	33	55	45	47
TTTATAAAACGCAGGC	ref_850_fdr	11	8	6	7	8	10	17	2	5	8
CTGGTACTCCCGTAAC	ref_850_fdr	34	52	30	32	71	24	63	28	72	30
AGCGAGCTTTTGCCCT	ref_850_fdr	18	17	26	12	17	11	16	12	6	18
CTTCAGGGGCGGCGTT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
CAACCGGACCCCCTGG	ref_850_fdr	15	13	17	16	7	12	15	21	10	14
AGTCGTTCTCTGAACT	ref_850_fdr	33	21	26	25	26	22	20	22	20	5
GTATAGTGCTGTACCA	ref_850_fdr	37	43	56	46	41	38	22	34	52	21
TTTCACTCGTCCTGGA	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
GAATATACCATCTGGA	ref_850_fdr	14	15	11	10	10	14	19	8	10	22
ATAAGGGTCTAGACCT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGGGGAGGGACGG	ref_850_fdr	12	9	21	22	15	11	12	15	15	12
TTTACTGAATCGTTCT	ref_850_fdr	93	65	122	112	85	102	74	102	90	72
AGTTTGTCAAATCTGG	ref_850_fdr	27	31	36	25	13	20	24	17	37	26
TACCGTACAGTTCTTC	ref_850_fdr	8	9	16	10	10	9	4	8	22	10
GATGTTTTGGGCGAGT	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGTTGAAAAAGTC	ref_850_fdr	11	10	15	11	14	11	15	10	10	7
AAGGTGTGTGGGCTGC	ref_850_fdr	53	55	65	53	57	56	57	57	64	64
AAATGCATAGTTATCG	ref_850_fdr	25	25	36	32	19	25	36	26	20	16
GTAGAGGCATGGATAC	ref_850_fdr	64	51	87	63	59	74	48	82	64	67
GTGAATCGTAGCCTGC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
AGGAGCCTGTCACTGA	ref_850_fdr	7	8	12	10	11	6	18	11	6	8
TTGCATTTAGCGCTTG	ref_850_fdr	36	29	25	20	27	19	28	26	36	24
GGGCCTCCGCATTACC	ref_850_fdr	43	59	65	65	49	52	40	65	47	46
GCCGATTATTTCATAG	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
ACGCGGTAGGCAGTGT	ref_850_fdr	109	84	133	105	115	104	102	108	128	103
GTCTTAATGAGAATTC	ref_850_fdr	73	68	74	85	82	77	69	53	75	72
CAACTCGGAGTAATTG	ref_850_fdr	13	19	20	15	16	21	17	20	21	29
TACCGTGATCAGCGCC	ref_850_fdr	63	50	71	54	66	45	43	55	55	41
TGATTTCGGGCACTTT	ref_850_fdr	5	11	10	9	13	8	12	3	9	11
TACTACGTCGATCGCT	ref_850_fdr	52	38	59	51	47	37	57	49	49	56
CAGAAGGAAACAGTGG	ref_850_fdr	49	62	45	64	45	40	50	51	38	48
ACTGGTTTCGGTAGAG	ref_850_fdr	83	77	103	79	95	64	85	85	94	67
CGCATCCTGCATCGTA	ref_850_fdr	89	80	101	94	95	65	71	63	85	70
TATCCTTACAGGCTTA	ref_850_fdr	56	52	67	58	70	57	71	48	65	52
CGTAAATGCGTATACG	ref_850_fdr	15	20	20	33	9	31	12	16	22	21
TATTGAAGCCATTGGT	ref_850_fdr	11	8	9	14	9	7	6	10	6	5
CCACGAGTTTGTCTTA	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGATTGTCCACGA	ref_850_fdr	15	38	10	16	33	19	36	16	18	9
GCCGTCTATAACTGTT	ref_850_fdr	16	23	23	21	26	12	27	22	20	19
AGCGGAAAATGGATTC	ref_850_fdr	44	33	64	55	32	49	39	48	63	46
GGGCAATCTTACTAAC	ref_850_fdr	22	27	31	26	35	27	31	25	30	27
TAGCGAGCCTTAGTAG	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
TCCACTCTATCAATTC	ref_850_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTGGATAAAGGTG	alt_5181_RC	239	137	253	232	141	216	135	210	127	204
CTTACCTGCAAGTTAG	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TAGTGTACTTGATAAC	alt_5181_RC	9	5	5	4	3	4	1	5	2	3
AGAGCATCCCATCCAA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TGTTGAAGTCTTCCGA	alt_5181_RC	115	59	136	81	61	95	60	90	53	99
TCACAACCTCATTACC	alt_5181_RC	50	34	61	46	24	40	39	39	38	25
CATAACGCATTACATA	alt_5181_RC	53	48	57	52	51	40	46	41	43	44
ACTAGGCCTGGCTTGC	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TCAACATTTCTCATTT	alt_5181_RC	49	28	64	46	12	39	33	33	32	50
TAGTGCGATGGTCTCT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
CCACCAGGAATCGGTC	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
CCCGATTTACCTCGAT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
GACATTGATGTTACGT	alt_5181_RC	145	83	154	118	52	107	62	98	72	112
ATTATTGCACGTTATA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TTGCGCCCCATCCTGG	alt_5181_RC	19	13	19	23	7	14	12	25	14	17
GTCTTTTGTGTGGGTC	alt_5181_RC	41	9	30	13	23	27	20	31	14	33
GTCCCGTAATGTCGTC	alt_5181_RC	211	84	240	181	120	190	112	165	101	200
TTGGTCTCGACCACCC	alt_5181_RC	60	28	51	47	38	53	20	71	40	33
GTATTCTCGGTAGACA	alt_5181_RC	118	68	158	137	74	122	73	90	64	111
ATTTACTTGATCCTGT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
GGCAAATAAGAAGTAT	alt_5181_RC	92	61	93	67	47	62	63	73	46	76
TAGCCTGTTTTCGATT	alt_5181_RC	30	11	26	20	16	24	16	24	17	10
GATTTAGTTATCATTT	alt_5181_RC	15	11	20	13	6	13	6	10	8	9
TTGTTCATCTAGAACA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
AGGACATCCAGCGTGT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TGCAAACGCTTCCATC	alt_5181_RC	72	43	82	67	57	69	58	77	40	68
CCGGAACAATCTAACA	alt_5181_RC	42	22	42	57	28	42	25	38	28	41
GGTATTTACCCTGGTA	alt_5181_RC	43	20	53	57	20	40	30	19	37	25
TGATAAAGGACCCATC	alt_5181_RC	14	5	25	15	11	5	5	11	8	13
AGAAGACTGCTAGCGG	alt_5181_RC	5	7	15	12	4	12	5	11	11	8
ACATCTCCATGATGCT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
AGATTAGGTAGGCCTA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
CCAGGTCTTCCTTCTT	alt_5181_RC	13	19	14	22	27	9	21	13	19	13
CTTTTAAATTCTTACG	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
CATCTTGCGCGCTCAA	alt_5181_RC	1	0	0	0	0	0	0	0	0	0
GGCTGCACTTTATAAC	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
AGGGTGGGAATTCTAT	alt_5181_RC	41	29	45	34	18	41	24	27	21	39
CGAACTGTCGTCACTG	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
ACTCTGAGACCGTATT	alt_5181_RC	3	1	2	8	8	6	1	2	4	5
TCCAGCTTTCAACGTT	alt_5181_RC	30	25	29	32	15	20	21	31	27	19
TCGGGGGTAATTTATA	alt_5181_RC	116	44	125	101	40	93	69	90	60	94
GTGTGGCTCGCTGTAA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
GGAATGTTTGGCTACT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TGGTCTCGCTCTACCG	alt_5181_RC	185	114	228	197	99	220	113	222	136	171
CGTATTTTCACACAGT	alt_5181_RC	17	15	22	15	11	24	12	16	13	17
ACAACGGGCCTCAGGT	alt_5181_RC	27	18	37	24	18	24	17	25	17	30
CTCTGAAATGTGCATG	alt_5181_RC	8	3	10	2	6	3	5	1	6	6
CCCCAGCCGTTCGCTT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
ATTTGTATGGAACCGA	alt_5181_RC	53	32	71	48	40	36	33	63	33	47
TTAATTTTGTTTCCAA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TTTAGTTCGGGTCAAC	ref_5181_RC	182	116	246	146	125	161	141	187	121	180
TATAGGTGAGTACTGC	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
CATCTTGCGCGCGCAA	alt_5181_RC	393	222	502	355	239	391	265	396	257	370
TCCTAAGGGATAACAC	alt_5181_RC	59	30	63	55	49	46	25	56	39	65
TACAGCCTGCTACGCC	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TTCATCCTAGGGACTA	alt_5181_RC	4	2	0	1	1	6	1	3	3	1
ATGAACCGGTTTGCAT	alt_5181_RC	268	135	286	236	165	229	140	246	172	232
ATTAACTCCGACTAGA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
GCCGCTGATCCTCCCT	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
CTTGACTCTGTTATTG	alt_5181_RC	42	30	46	35	30	44	27	28	32	33
TCATATATATGAGTTC	alt_5181_RC	12	8	16	11	5	12	9	6	8	2
ATGTGGTAGATGTCCC	alt_5181_RC	28	3	18	16	8	13	6	9	10	13
CAACTATCCGTTGAGA	alt_5181_RC	85	42	79	66	49	65	40	68	44	51
GGTCCAGTCGTCGCAG	alt_5181_RC	39	13	37	28	15	34	16	31	24	31
TCTTATGGGCTGCGCT	alt_5181_RC	42	40	55	49	22	49	21	37	13	43
CTTTCCTAAGTGGCTG	alt_5181_RC	25	12	31	24	13	24	24	18	21	16
CGTTGGCTGGGCGAAT	alt_5181_RC	98	59	110	87	44	106	47	88	53	86
ATGTAATAGCGAACTG	alt_5181_RC	95	51	129	78	56	75	54	88	69	84
TAGCACATAGTACCGA	alt_5181_RC	55	39	69	64	26	83	30	55	47	49
CGTCTAGTTGCGTCTC	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
CGTAAAGGCCTTCATA	ref_5181_RC	105	60	117	100	46	102	49	81	56	82
TGGGACCGACGTAGTG	alt_5181_RC	115	60	135	88	65	106	75	98	68	96
AGGTTTTCGACTAATG	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TGAGATCTGGGAGTCA	alt_5181_RC	39	13	35	35	30	49	25	43	25	39
GCACTGAGCATGTTGA	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
TGGTTAGGAGGCTGTC	alt_5181_RC	203	118	264	249	137	230	142	206	167	214
GCCTCCGACGTTTTAA	alt_5181_RC	49	29	50	40	30	39	18	26	34	30
TCTATTGCTTCAGTGC	alt_5181_RC	0	0	0	0	0	0	0	0	0	0
ATTTATAACTCGCATC	alt_5181_RC	16	8	16	11	13	12	5	22	4	13
TAGATTTCTTACTGTG	alt_5181_RC	4	6	8	4	2	5	7	6	1	9
CTTCGGTGCCTAATCT	alt_5181_RC	41	25	37	38	25	31	33	27	33	41
CGCGTTGTACGCAATA	alt_5181_RC	83	54	81	76	40	65	47	85	43	80
TCTCTATAGGGGATCA	alt_5181_RC	53	50	65	58	61	48	40	52	49	51
AACTCTCGCAGCAGCA	alt_5181_RC	109	60	136	110	64	109	60	85	84	102
GAACAGCTTAGTAAAC	alt_5181_RC	160	67	190	138	106	152	120	137	98	171
ACATGTACCTCCTGCT	alt_5181_RC	8	5	7	7	3	3	5	6	5	6
TACGGCGTTTGGATAA	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
AAACAAACCACACGCT	ref_4446_fdr	129	202	159	158	197	145	196	139	224	122
CGCTTTGTCTCGCTAA	ref_4446_fdr	64	54	61	49	50	63	58	47	71	59
TCAACTGAGCGGGTCA	ref_4446_fdr	16	34	15	17	28	25	22	22	28	20
TCATAGATTGGCGACT	ref_4446_fdr	62	77	87	67	93	52	93	52	97	62
CCTGCATCGCCCTATG	ref_4446_fdr	51	48	61	49	61	42	44	25	62	47
AAACTGTGCGTTTCTC	ref_4446_fdr	9	10	12	12	13	5	11	18	9	11
CTCTGCTCCGGGTGAT	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGGACCCGCTTT	ref_4446_fdr	17	29	31	38	23	30	45	27	30	19
GACACGACGTCTCAAC	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCATATCGTCTGG	ref_4446_fdr	19	26	20	17	28	26	24	18	21	8
TCGTTATTTCTTTACT	ref_4446_fdr	28	40	51	33	41	31	46	21	46	32
TTTTGGATCGGAAGTA	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTGATATAGCCGG	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTCCATTGCTAAG	ref_4446_fdr	8	15	17	6	7	5	10	5	13	2
ATTCCATACGGTATGG	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCAATGGTCTAGC	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGCCTCGGACGGG	ref_4446_fdr	18	13	16	15	22	16	15	29	32	18
TTTCAGTTCTGAGGTC	ref_4446_fdr	34	40	44	43	45	28	36	29	63	28
TCTTGATTCTCGCAGG	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTGCTCGTAGGGT	ref_4446_fdr	5	4	1	1	4	0	5	0	9	2
TTGGATAAGAGCCTCC	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
AATTTTCTCCCAGTGG	ref_4446_fdr	11	13	17	14	13	9	19	7	12	9
AGGTGGTGGTAGGTTT	ref_4446_fdr	21	33	36	24	31	29	28	33	31	26
CTCCACTCCAAACCGT	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
AGATATAAGTCTGTCG	ref_4446_fdr	36	36	40	34	43	19	44	35	44	28
CGGGAAGGTACGATCG	ref_4446_fdr	5	10	6	3	11	5	10	7	10	4
TCAACCTAGGGCGGAT	ref_4446_fdr	28	31	20	23	28	28	27	24	29	20
GCATATCCATTGAGTG	ref_4446_fdr	9	12	15	10	9	11	10	10	20	21
GGCGTTTGTTTTTGTA	ref_4446_fdr	15	21	26	23	16	17	21	9	23	17
GCCACGACGTCTCAAC	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGCGCTCCGTCAG	ref_4446_fdr	127	101	137	131	105	131	103	108	123	108
GCGTTGCTAACGGTGC	ref_4446_fdr	6	10	8	5	8	11	9	2	15	3
TGGGTATACCACCTTG	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCTTGGAGGTTTT	ref_4446_fdr	14	9	15	8	9	7	8	5	11	3
GCTCGCTATCTATTAG	ref_4446_fdr	5	9	10	12	13	9	24	6	13	7
CATCATGTTAACGGCC	ref_4446_fdr	20	10	16	25	13	20	16	9	25	16
TTTCTCCTTACTTCCC	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
GTTCGGCCTGAATATT	ref_4446_fdr	1	7	10	4	6	4	3	0	8	4
TGTAGTCAGGCATTCC	ref_4446_fdr	49	68	69	56	76	64	76	59	60	42
GACCTTGTACCCAACA	ref_4446_fdr	37	55	53	59	53	44	57	46	54	35
TATTGATCGTTGTAGT	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTGGAACGAGCTT	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCGCGAGGCAGTT	ref_4446_fdr	55	57	94	61	77	69	78	63	87	51
CTCGGTGTAGTCAATC	ref_4446_fdr	47	50	78	68	58	37	44	51	74	41
ATCTTACTGTTTTACC	ref_4446_fdr	8	5	13	6	7	6	8	4	6	6
TTTTTCCTCGCTCAAG	ref_4446_fdr	6	5	10	8	7	6	6	4	7	4
TACTTGGTTGTGTTAT	ref_4446_fdr	36	36	40	29	53	32	43	34	48	26
ATTTGCTCTCGTAACT	ref_4446_fdr	19	36	24	28	49	30	35	21	41	23
CGTGTTTCCTCACCTT	ref_4446_fdr	8	14	8	8	19	6	19	3	14	9
CGCGTGCGTCCTGTTG	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGATGAATACCTC	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAGTAGTGCGTAT	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
CTGAATATAACTTTGA	ref_4446_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCTCTCCGGCCAT	ref_4446_fdr	31	44	56	34	49	31	49	58	38	37
GGCCTAAGTTACCGAC	ref_4446_fdr	16	11	20	29	11	12	23	17	20	4
GTTTGTCTCTTCATCT	ref_862_upstream	31	31	43	30	28	31	30	34	35	32
GGCGGTCTTCTCATGT	ref_862_upstream	8	15	10	11	9	7	5	7	8	8
GCAGGGTCCACGATTT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGTGTGAACAGTT	ref_862_upstream	15	16	11	12	10	10	19	11	15	10
CAGTTCAGCTCTTTTC	ref_862_upstream	89	90	119	81	77	60	86	101	81	82
AACGTTATTGTCCTCT	ref_862_upstream	31	24	33	31	30	32	21	32	27	39
TCATGCTTGTTTTTTA	ref_862_upstream	8	11	15	13	12	12	17	15	11	14
GTGTGTCTTTGCCCTC	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GTACTAAGGGTTATAC	ref_862_upstream	32	42	45	34	40	27	30	29	38	34
CTCCCGTGCAGATAGA	ref_862_upstream	2	6	7	4	12	1	9	7	4	4
AAATTGTCTTGCCTCG	ref_862_upstream	12	18	13	14	9	13	9	12	17	13
GTAGATTCCCCATGAC	ref_862_upstream	8	21	9	8	11	8	11	7	13	2
TGTGACCGTAAGTGAA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTAAGGGTGCCTA	ref_862_upstream	11	13	29	12	16	15	11	12	17	8
ACTTTGCGCTTTATCA	ref_862_upstream	25	10	27	31	10	24	23	21	20	28
TGCCCCGATTCTTTTC	ref_862_upstream	10	7	9	11	5	6	3	15	5	5
AATAATGAACACGTCA	ref_862_upstream	170	145	197	178	139	163	133	175	144	149
TGATGGCTTTTCGCAC	ref_862_upstream	217	201	255	244	189	194	182	193	181	167
CGACCCAGCGTCGCAA	ref_862_upstream	148	106	126	128	115	93	114	125	86	117
TCGCTATTCAGTACGT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
ATCACATGTAAAATCA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTACTGGGCTAAT	ref_862_upstream	5	11	7	2	5	3	6	5	4	4
CGTACTTAAGCATGGT	ref_862_upstream	4	5	16	6	4	4	3	1	7	2
ATAATCCGCCCGGCTA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CGTGAGTAGCTTAATT	ref_862_upstream	67	75	74	63	57	61	69	61	56	56
TATTATCTCCCGATCT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTGTAACGGCCTT	ref_862_upstream	27	15	29	21	18	20	24	19	31	20
CGATAACTACGCCTCT	ref_862_upstream	12	1	0	10	9	4	2	7	7	4
TGTTTTATGGTACTCA	ref_862_upstream	57	82	49	55	70	52	79	61	77	39
GATGGTGTGGCATGAA	ref_862_upstream	84	109	113	98	74	96	92	89	87	76
CGCATGTTCACAGGTC	ref_862_upstream	95	68	107	82	84	76	73	88	75	94
GAGTTTGGATCGGTCT	ref_862_upstream	7	7	4	9	9	4	7	4	3	4
GGCGTAACACACATGT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCGTAGTACCGCC	ref_862_upstream	12	20	20	16	16	12	12	18	15	13
GTAATGCGTCTACCCC	ref_862_upstream	11	20	20	17	5	7	11	8	16	8
ACATTTTGCCATTCGG	ref_862_upstream	18	27	39	22	23	23	20	20	27	29
CGAACATCCAGTTTCT	ref_862_upstream	19	28	36	33	28	24	20	30	30	26
GGAATCGGCTTTTCGC	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TCACATCATTGGGATC	ref_862_upstream	167	151	174	140	149	130	140	127	173	129
ATTCAAAGGAAAGGGG	ref_862_upstream	15	13	25	17	10	15	20	8	25	13
TCATAACAAATAGTGA	ref_862_upstream	15	28	24	28	15	19	21	18	25	24
GGTAATGACCGTCTTA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
AACTGCAGTTTTGTTA	ref_862_upstream	12	12	18	11	21	12	19	17	13	13
ACCGACCTCCAATCAA	ref_862_upstream	14	10	28	15	27	17	20	20	12	18
GAAAGTTTAGACATCT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGAGACATTCGCT	ref_862_upstream	41	29	44	42	35	40	35	42	40	41
TACCTGGCCCATGGTG	ref_862_upstream	27	10	15	23	15	7	16	10	20	16
GTTTTTCCCATCGTAG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGTCAATTTTTC	ref_862_upstream	61	47	60	46	50	62	51	39	63	42
GGGAATATGGTAACTG	ref_862_upstream	24	19	57	22	36	30	30	29	24	22
CTGCTGGTAGATGAAG	ref_862_upstream	53	41	50	51	47	34	34	32	31	49
TCCGCAATGTGTGATG	ref_862_upstream	40	36	55	30	26	30	43	38	51	42
AATAGCCGCGCTCTTG	ref_862_upstream	1	1	0	2	0	1	1	2	4	1
TGCTACCTCCAGCTCG	ref_862_upstream	38	37	55	35	39	38	34	32	53	44
CTTTTAAAGGCGTGGC	ref_862_upstream	9	22	8	8	13	9	15	8	16	11
CAGACTATCACGTGTA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGCATTCTATCCT	ref_862_upstream	5	11	2	8	10	2	19	6	19	2
CGCCAAGTAAAGATGC	ref_862_upstream	156	76	166	140	70	130	83	141	77	114
TCCTCATCATTCGGGG	ref_862_upstream	16	11	19	6	17	12	17	7	13	8
TCACGTTACCCCTCGT	ref_862_upstream	11	14	10	7	14	12	11	18	24	15
CTCGCTGTGATTTATT	ref_862_upstream	21	21	20	20	18	10	20	14	20	15
CACAATGTCCGTACAC	ref_862_upstream	35	29	32	27	27	24	27	23	30	29
TCCGGTCAATTCCGGT	ref_862_upstream	43	47	53	39	42	40	64	36	46	36
TCATTATGCCGCGAAG	ref_862_upstream	240	209	264	213	216	221	242	230	212	215
CGGGCAGCTTTTGGCC	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
ACCAGCTGACTACGGG	ref_862_upstream	18	54	23	31	52	18	72	32	62	16
AGCTCGTAGTAATCGC	ref_862_upstream	9	5	5	6	6	8	3	9	6	6
TTTTGGAGCTATCCGG	ref_862_upstream	40	24	44	41	34	29	32	35	30	21
TCAGTCTTCGCATACC	ref_862_upstream	28	49	41	47	43	31	46	32	35	26
ACAACTTGATCGTTTG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGATTTTCTTATC	ref_862_upstream	55	53	62	40	41	41	28	33	44	48
TTAGAGTCCCACACGG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGGTAAAGTCGTC	ref_862_upstream	178	143	215	175	148	197	165	163	159	166
TACTGTTATTCGCAGT	ref_862_upstream	22	11	16	19	10	15	19	10	15	11
ATGGGAGTTGAAGCTT	ref_862_upstream	4	7	10	9	5	11	10	7	13	2
TACTGACAATAGTGCA	ref_862_upstream	36	55	42	43	46	43	40	37	42	30
TCGTGACTTGTAGCTG	ref_862_upstream	34	37	42	46	29	30	37	30	35	35
GCACCAGGATGATAGT	ref_862_upstream	75	69	88	70	62	67	79	71	88	67
CCTGGAATGGAGATAT	ref_862_upstream	219	166	249	205	197	202	187	212	203	201
TCCTTGCTGTTTATTC	ref_862_upstream	12	12	10	7	10	5	14	8	24	11
GGTGTTCTCTAAGCAC	ref_862_upstream	22	23	15	22	21	16	26	25	24	20
CCACGTCAATTTATAG	ref_862_upstream	12	27	13	13	20	14	19	10	16	15
GGATCTCACATCATGA	ref_862_upstream	65	76	93	78	62	74	88	79	58	78
AGGCTCTCTTGAAATG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCACATGTGTTAT	ref_862_upstream	13	17	33	24	23	12	24	23	32	16
AGCTAATATCTCCATT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGGGCTCTGCCTT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GACTTTAATAAAGTGT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGTGTCAAGGTAA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
ATGTGTCCCTTAGACA	ref_862_upstream	48	38	37	36	41	37	22	28	33	37
TTCAGACTGAGTCCGG	ref_862_upstream	19	23	21	15	17	11	25	14	20	14
TTGTCCTATCATCCTA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TTCACGTAATATTGGG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTACTTCCGATAG	ref_862_upstream	49	43	59	54	57	50	55	52	44	43
TGTGGAAGCTGCCACA	ref_862_upstream	86	113	99	81	90	81	89	73	87	70
AAGCGTAAGCATTATC	ref_862_upstream	6	0	4	0	4	4	6	7	2	3
GGCAAATTCCTTACAT	ref_862_upstream	110	79	140	116	74	97	97	116	74	110
ACCCTTGGTCTACTCG	ref_862_upstream	81	77	86	68	80	78	80	73	70	64
CCGAGTCAACGCTGAG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGTGTAACAGATC	ref_862_upstream	17	18	17	9	7	12	13	11	13	6
TCCCTATCCCATACTT	ref_862_upstream	12	15	22	15	13	14	22	6	17	10
GGTTGCTCCTCCTGGT	ref_862_upstream	31	24	30	29	27	20	36	16	28	18
CACAGACTATGATTTA	ref_862_upstream	14	19	19	12	13	10	19	8	16	8
GGTACCAATGCTAGGT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCTCGGATTGGAT	ref_862_upstream	113	123	133	115	118	94	111	100	136	94
CCCCTGCTTCGCACAC	ref_862_upstream	203	185	218	204	215	165	198	204	213	182
TCCAGTCCTTATGCCT	ref_862_upstream	1	9	8	4	12	3	19	4	13	3
AAAACTTCACGGTTGT	ref_862_upstream	91	66	88	58	58	69	79	63	80	66
TGTCGAGGTCTTTTCG	ref_862_upstream	41	55	42	45	40	41	42	43	49	32
GTCTTCCGTCGTTTTG	ref_862_upstream	136	151	179	160	151	147	146	145	172	130
CCGTGGTGTTGAACAA	ref_862_upstream	26	47	27	34	47	19	52	17	63	16
GGCTCAACAGTGCCAG	ref_862_upstream	33	43	51	37	42	25	34	19	57	32
TATCGGGCGTCGGCGA	ref_862_upstream	3	1	4	3	4	0	2	4	0	5
CCCGTCGCATGCTATT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
CTAGTTCCCCGGCTTT	ref_862_upstream	33	68	36	39	64	32	58	33	63	34
TCTCCGATGCATTGAA	ref_862_upstream	27	22	26	15	15	14	20	27	28	14
ATGGGGGTCATTGCAC	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GATTTACTTTCTGCTC	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
AACCTCAACTCATACC	ref_862_upstream	55	87	74	62	68	42	75	45	78	51
GCGTTGCATGGCTGTC	ref_862_upstream	13	12	8	6	8	9	9	3	15	15
CGCCCAAATGTGCCGT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GGCCACACGGGCATTC	ref_862_upstream	35	38	43	46	72	26	44	43	46	37
AGCGTAGGCTCATGTA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTTTCCCACTTAT	ref_862_upstream	3	7	4	6	3	3	6	7	4	4
CCCAGGAGAGATTATC	ref_862_upstream	12	17	15	8	20	12	15	12	9	13
AGTAGTTCATTCATGA	ref_862_upstream	14	12	17	14	13	12	21	7	20	11
ATTGACTATCGAGTCG	ref_862_upstream	63	59	98	76	69	66	74	57	50	70
CCTCCTCGCAATATCT	ref_862_upstream	2	2	4	4	0	2	0	1	2	3
CGATGGATTTTGGTTG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGTCGTCGTCAGG	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
ACTGCGACTGCACTAA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTGTTCTAATACA	ref_862_upstream	10	16	12	13	10	12	17	7	14	5
GTTTATGGTACGCCTC	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCATGTCGTGTTC	ref_862_upstream	138	114	149	124	92	118	126	97	112	92
TCCACTTGACTCGCGA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTACTACTTTTTT	ref_862_upstream	139	137	185	160	158	138	142	136	135	106
GGCTATCCTTGTGTTT	ref_862_upstream	36	24	32	32	39	29	36	34	43	37
TCCTTACCAATTTAAT	ref_862_upstream	6	4	3	6	5	5	3	4	5	3
CGGTCGGTATGTATAC	ref_862_upstream	39	31	43	44	28	33	34	42	44	33
TGCCGGCAATGCCTAC	ref_862_upstream	33	49	35	34	48	40	46	40	48	37
GAGCCTGTTAGCGTTA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGGTCGATGGCAA	ref_862_upstream	4	44	11	2	29	11	40	10	46	11
TACTAATGAGACCTAG	ref_862_upstream	2	0	4	1	0	1	4	0	2	4
TTTCTTACTTGATATT	ref_862_upstream	37	29	34	38	28	41	29	25	34	26
TCATCAGGAACCCTAC	ref_862_upstream	42	51	42	36	31	38	42	23	53	25
TCGATATCCGACCGGT	ref_862_upstream	14	6	21	15	8	8	9	8	14	18
GTTCATCCTCGCATTG	ref_862_upstream	8	6	15	8	1	10	17	12	7	10
GTGGTATGCAATGCCA	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GGTCATAAGGATTAGG	ref_862_upstream	0	6	6	2	8	5	4	1	8	7
GTTTTGCCTCGCATAC	ref_862_upstream	36	37	57	57	38	32	41	58	40	54
GCCTTCCTCCAAGCCC	ref_862_upstream	18	14	24	19	23	19	27	28	25	20
TACCTTTTCAAGTCTA	ref_862_upstream	3	10	6	8	4	3	7	2	5	2
TTAGTTATTTTTGGTT	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTAATCACGTCCT	ref_862_upstream	3	3	8	5	6	3	9	8	3	3
TAACGGACCGTGACTC	ref_862_upstream	0	0	0	0	0	0	0	0	0	0
TATTATCCATCATAAA	ref_862_upstream	17	8	25	17	17	16	18	19	19	22
GGTCGTCCCCTTATTT	ref_862_upstream	42	40	37	32	35	33	27	29	45	32
GTCGCCGTGGCCAGCA	ref_862_upstream	63	66	68	69	50	56	60	55	74	49
AATAGGCGTGAACCTT	ref_862_upstream	42	50	68	40	55	57	65	40	57	43
AGCTTAATCCATGTAT	ref_862_upstream	20	28	22	12	14	19	19	12	22	17
CCGTGGTGGTCATCTT	alt_5476_missing	2	9	6	0	8	0	4	0	0	1
GTAGTTTTACGTTATT	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
GGCATCGAGGTATAAT	alt_5476_missing	5	6	12	13	11	9	10	5	22	12
GTTTTGGGTTCATTTG	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
ATCAATTATACGTTCG	alt_5476_missing	12	14	22	12	25	16	22	4	34	13
TCTTAAAGTAAACTCC	alt_5476_missing	8	9	3	8	5	4	3	6	6	4
CATATTCTCTGTAGCC	alt_5476_missing	13	15	31	16	33	14	24	18	23	7
AGTTTACATGTAACTT	alt_5476_missing	8	17	14	13	8	15	18	15	17	9
GATTATAGGGATGGCG	alt_5476_missing	10	14	12	17	10	10	16	8	18	5
TCATTATGCAGATCAA	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
TCGCTCCGTTCAATTT	alt_5476_missing	4	1	3	3	2	1	5	7	6	1
CAGCCCTTATACAGTG	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
TTCATAAGGGTTTCAT	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
TCTCAGCATCGACTTG	alt_5476_missing	16	21	17	13	19	9	22	10	22	17
GGGGAGAAGCGTCAGT	alt_5476_missing	107	165	136	136	133	90	150	98	174	96
GTCAACGACGTATCGC	ref_5476_missing	7	24	3	7	12	3	9	4	22	7
TACCGGACTACTGTTG	alt_5476_missing	3	3	9	3	7	2	11	0	8	1
GTTTCACAATTTGCTC	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
GCCAGTATTTTTGCAT	alt_5476_missing	6	4	1	1	4	3	6	5	5	3
CCGCCCATCAGGCATA	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
TCTCCCTCGGCCATTC	alt_5476_missing	4	3	13	7	3	5	6	5	5	3
TGATGTTGCTCGCGTT	alt_5476_missing	17	12	16	13	14	23	23	9	22	21
AAACCGCTTTTAGTAT	alt_5476_missing	8	14	13	9	14	6	17	12	11	7
CTCGCATTCCCAGTGG	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
CAACGTGCGCCTGTGC	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
TCGGGGCGGTTATAAT	alt_5476_missing	6	10	5	5	12	3	4	2	6	2
CAGGTGACCGCAATCA	alt_5476_missing	14	27	22	14	27	18	20	13	22	16
TAAGGAGGGTTGCACT	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
GTAGTTAGCGGTGCAC	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
GAAATCTATACTTTAA	alt_5476_missing	21	22	27	17	34	21	18	14	32	24
ATCATTAATTTACTTG	alt_5476_missing	4	13	12	4	15	7	8	13	9	10
GGGGAGAAGCGTCAGG	alt_5476_missing	3	2	0	1	0	2	5	4	3	4
TGCATGGCTCTCCCCT	alt_5476_missing	3	6	2	4	10	7	3	1	11	2
TCGCCCTTGCTTTTGC	alt_5476_missing	15	8	14	12	17	9	11	7	16	10
ATCGATGAGGGCTTAT	alt_5476_missing	7	9	7	6	6	9	8	12	8	6
CATTTACTCTTTGAGG	alt_5476_missing	21	34	37	18	41	7	35	28	38	24
CAACCATGACCTGTAT	alt_5476_missing	8	11	5	23	18	7	8	18	15	8
GCTCCCCCGGCAGGAA	alt_5476_missing	6	18	9	10	24	8	21	14	21	5
CTTGTCTATAGTATTC	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
AATTCACCATTTTATC	alt_5476_missing	5	2	4	2	5	5	2	4	2	8
TTTTTACGTTGTCTCC	alt_5476_missing	0	0	0	0	0	0	0	0	0	0
TCCTCGGTAGACTATA	alt_5476_missing	7	20	11	5	16	6	17	3	18	8
GTTCATTTTCGTGCTG	ref_5019_RC	41	44	42	50	30	27	39	45	39	24
CCCTGAATTCTCTGTC	ref_5019_RC	22	44	39	35	50	28	50	27	40	25
TTGAGCATTAGCACCA	ref_5019_RC	16	26	23	24	21	20	23	21	31	11
GCAACGGGATACGGAT	ref_5019_RC	77	76	79	73	75	69	70	86	77	48
TTACTGATTATGGGGC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TAGCCCCTCGTGGGAC	ref_5019_RC	57	62	74	58	56	57	46	61	54	51
CCGGCAGGCCCTTAGA	ref_5019_RC	109	119	103	87	132	74	115	67	137	78
TACAAGCTCGAAATTG	ref_5019_RC	8	4	9	10	3	11	8	5	10	7
CCATCGTTTTCTCTGC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TTATCCCGGTTTTGAT	ref_5019_RC	22	14	20	25	24	30	26	18	12	26
TAGCTCCTCTTAGAGT	ref_5019_RC	17	16	20	22	26	15	34	22	23	20
TGTTTCCCTATCCGGC	ref_5019_RC	33	31	35	26	37	29	46	26	33	35
CCCGGCGAGGGTAAAG	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TCGACCGTTAGATCAT	ref_5019_RC	216	308	304	248	289	236	295	238	326	212
TATTACTAGGTGTGTA	ref_5019_RC	13	12	13	13	21	8	12	13	10	7
GACCGCCGTAGGCACA	ref_5019_RC	40	21	39	39	38	29	37	31	52	21
ACTTCCAGGGACTCTA	ref_5019_RC	2	5	4	4	5	1	12	5	5	5
GGGTTCCACTAACTAT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TTTATAGGTCTCAGGA	ref_5019_RC	4	14	11	8	12	15	15	8	10	8
GCAATCGTGAATGGGT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
CTATAAGTGAGGTACA	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TATTATTCATAGCGTG	ref_5019_RC	17	28	14	19	9	11	17	15	23	13
CTCTATGACGTTGCCA	ref_5019_RC	1	2	8	1	4	1	3	4	0	0
GGATCTTAATGAATGG	ref_5019_RC	40	35	32	31	25	35	27	28	48	22
CAGTCGTTTTGTACTA	ref_5019_RC	7	9	12	6	6	4	2	7	4	5
GGCAATGGTTACCGCC	ref_5019_RC	33	23	48	33	26	30	31	23	40	30
TTTGGGTTCCTCGAGC	ref_5019_RC	11	6	6	14	14	10	8	8	6	12
CGCAACAGTGCGTCAA	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TCCGATCGTCACTACC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTAGGCGAGGCT	ref_5019_RC	49	36	47	39	50	47	52	38	41	36
CCGCTTGTTATCGGTG	ref_5019_RC	10	14	14	11	17	13	16	10	14	5
AAATCCACGGTTCCCA	ref_5019_RC	57	47	35	38	54	38	56	43	42	45
ACCGCTGGTGATCCGC	ref_5019_RC	56	47	44	39	47	43	59	42	52	23
TTCCCGCAATTGCCAC	ref_5019_RC	87	143	112	83	129	85	121	93	151	101
ACCACGATGGTTCACA	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TATGTATCGTATTGAG	ref_5019_RC	7	10	6	9	3	5	6	8	6	6
GGGGTCTTTCGACACT	ref_5019_RC	40	41	35	34	37	27	33	38	37	28
TCCATATTTTGCGTTC	ref_5019_RC	17	28	39	21	22	15	24	24	27	10
TTTACAGTCGCTTATT	ref_5019_RC	38	30	42	41	18	35	21	30	17	31
AGGTACGAATTGACGA	ref_5019_RC	1	12	8	5	7	4	8	10	9	12
GATTCGCGTTCATCCC	ref_5019_RC	51	66	75	54	62	45	42	52	69	37
ATTCCCCGTGCGGCCT	ref_5019_RC	8	9	15	15	17	11	11	10	15	17
CAATCTTCTCCTTCAT	ref_5019_RC	43	46	61	38	51	38	51	51	56	45
ACGAAAATTCTCGTGT	ref_5019_RC	7	7	5	7	9	4	11	5	12	7
AGAGTCTTCGGGCTAT	ref_5019_RC	23	12	31	26	26	20	21	10	19	16
TCGAAACTAGCCGAGG	ref_5019_RC	113	143	191	125	159	110	152	122	162	108
GTAAGCCAGGGGTTAA	ref_5019_RC	15	16	16	17	13	19	23	9	16	16
ATTTTAAACCGAAAGG	ref_5019_RC	14	11	8	5	10	11	12	9	14	10
TAGGTTGCCTTGGTCT	ref_5019_RC	26	39	36	27	41	28	36	33	63	27
TGGATTGGTTCTACTA	ref_5019_RC	55	53	52	45	60	60	83	50	69	47
GGTCTGGTAGATCGTG	ref_5019_RC	16	25	24	17	28	23	31	18	36	18
TCCTCAGGCAATGAGG	ref_5019_RC	31	35	30	39	37	30	34	27	34	19
GTGATCTTACCGAGCC	ref_5019_RC	78	75	104	71	77	78	74	61	102	78
TAGGGGGGGGTACACT	ref_5019_RC	22	34	30	16	25	19	31	22	31	12
CCCCCTTGTTGTTTGC	ref_5019_RC	28	58	39	24	54	37	59	24	60	25
TTTCGATACAGACTGT	ref_5019_RC	9	18	11	10	11	11	12	11	26	7
CCAGGCGTACAGCTGC	ref_5019_RC	21	30	30	30	24	28	27	19	27	28
ATTACATATCATGACT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TACGCCTGGTCGACTC	ref_5019_RC	58	73	67	74	68	57	88	57	76	55
ACGCTGCTCCTTTGTT	ref_5019_RC	42	39	56	46	32	48	36	35	31	24
GGTGCCGTCGCGACGC	ref_5019_RC	25	15	31	20	19	26	20	24	27	21
GGTGTGTTTTGTATTG	ref_5019_RC	13	30	22	21	22	18	18	14	26	6
ACGTCTCTCCGAGACA	ref_5019_RC	157	185	195	160	208	167	218	151	232	163
CTGGCCGAGAATTAGT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
AGGCGGTCGTACTGGT	ref_5019_RC	8	13	16	14	14	11	10	11	11	9
ATGGTGTTAGGTTCTG	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
GTGTACATGATAACCT	ref_5019_RC	9	8	10	11	6	4	15	5	5	5
AGACAGGTCTTTTGGC	ref_5019_RC	1	5	3	0	6	3	4	1	4	2
ATTATTCTTTTCATGT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TCGCCCAGCACTTGCG	ref_5019_RC	8	6	8	5	14	9	15	11	4	10
GTCTTGAGAACCTTAA	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
GTAATGAAAGGTCAAT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
GGAACGAGCTACTATT	ref_5019_RC	30	41	44	26	38	33	39	28	48	19
AATAATATGCTCGGCT	ref_5019_RC	42	25	53	45	34	28	45	34	41	28
TCTTCGAACTAAATTC	ref_5019_RC	23	33	37	26	30	18	35	26	47	30
GCATTCCCGATGATCA	ref_5019_RC	5	31	18	18	47	8	23	18	35	5
TAACTCTGGTCGGTTT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
ATTGTACGCTTTATTG	ref_5019_RC	12	11	5	6	6	8	7	4	8	7
GTGACTATTGGTACAA	ref_5019_RC	6	14	13	12	4	7	9	9	5	3
GGGTATTCCGTGTAAA	ref_5019_RC	10	15	16	11	20	9	15	15	18	17
CGGTACAAACCTTATT	ref_5019_RC	57	74	66	47	83	33	73	56	78	49
GTCGTGACGATTGTAG	ref_5019_RC	10	11	12	19	26	15	16	16	19	21
GAAGGTACAGGGGAGT	ref_5019_RC	26	38	36	40	32	30	51	30	36	40
GGTGCTAGTAATAGGG	ref_5019_RC	72	53	73	76	55	55	61	66	53	54
ACTTGTCATCTCATAT	ref_5019_RC	0	3	6	3	4	4	0	4	2	2
ATGGGTGTCTTCTGAG	ref_5019_RC	2	7	2	3	8	9	2	1	8	7
CTGTTTTCGTTGCATG	ref_5019_RC	23	16	33	32	22	17	17	29	36	28
GCCGCTGAGAGCGTAC	ref_5019_RC	39	63	65	40	71	52	71	34	79	45
GCTTCTTTTTATTCCC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
ATTCCACAGATAAGAG	ref_5019_RC	29	28	48	44	42	32	29	30	29	37
GAACCTTTGCCTTTCT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
CTTAGCCTCAAGGATT	ref_5019_RC	42	49	56	36	59	43	30	38	58	29
TCGTATTCTCCCTGCT	ref_5019_RC	37	42	44	35	54	41	49	41	43	42
CCCTTCTGTAAAACGT	ref_5019_RC	7	24	21	9	23	9	21	15	23	12
TACCGGTTTAACCTCA	ref_5019_RC	14	31	19	17	41	16	25	9	29	11
GAAGAGAAGTTTTGTT	ref_5019_RC	13	16	18	15	15	16	19	14	16	15
TGTCTTGATGCGCAAA	ref_5019_RC	2	4	6	4	5	6	3	5	4	2
ACGTCCGATTATTCCG	ref_5019_RC	19	20	14	17	19	15	15	19	23	13
TCCGACTGCAATGGCA	ref_5019_RC	48	30	43	46	32	36	33	36	35	28
CATCAGTGGATTAGAC	ref_5019_RC	37	45	59	47	39	43	46	28	42	43
AATCGTTTGCGTGTTA	ref_5019_RC	60	81	73	55	83	65	90	51	92	35
TCTGTAAACCCATTGG	ref_5019_RC	11	22	10	7	17	10	15	8	18	7
ACTTGTCTCTTGGTCT	ref_5019_RC	14	6	2	10	8	5	14	7	10	6
GTCGGTGCCGGTGTCA	ref_5019_RC	20	15	18	13	15	12	15	19	11	9
ACTTCTGTTCACATTG	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TGAATATCGCCTTTCC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TGCTAGTCCTTGTTAT	ref_5019_RC	9	10	3	8	7	11	15	1	16	10
GCCTAGTACTAATATG	ref_5019_RC	5	6	5	7	3	7	11	4	5	4
GGTCTTGTGTCGACTA	ref_5019_RC	16	19	16	14	26	18	23	16	20	16
GCGCATTCATGTTGCT	ref_5019_RC	22	32	27	20	28	19	27	16	17	17
GGGCACTACCACATCG	ref_5019_RC	77	89	92	81	75	53	70	50	84	85
TGTTCGTTGGCGTATA	ref_5019_RC	16	20	23	13	18	7	23	15	13	11
GAGGACCCCTGTACTC	ref_5019_RC	24	28	21	30	43	23	47	37	41	33
CTGCAGGGGCATTGCC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
GTTTCCATTTGTGCAT	ref_5019_RC	30	37	35	21	27	19	27	26	33	23
ATCCTGTCACTTACGT	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
GGGTACGCACCATTTG	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
GGACATCTGGTAAAAG	ref_5019_RC	85	97	76	80	93	87	82	74	110	71
ACGAGGTGAGATGTCT	ref_5019_RC	5	11	11	13	11	12	9	11	17	10
CATCTTACTCCGAGTC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
CCTTTAGTATATTTAC	ref_5019_RC	0	0	0	0	0	0	0	0	0	0
TGCTTTTTTCGCGACC	ref_5019_RC	45	61	58	57	67	46	68	48	86	56
CTGCCCCTGGCATTTA	ref_5019_RC	14	25	15	20	19	26	31	22	22	15
GCAAGGTTCGACTTCT	ref_5019_RC	72	82	84	92	70	79	89	71	103	72
TTGTGGCCCCGAGTCA	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGGCTTCTGCCTG	alt_1787_upstream	61	96	77	80	83	66	85	59	104	42
CACGACGATTCCATTT	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
ATCGACGGATTTCACA	alt_1787_upstream	13	10	7	4	14	11	23	10	18	9
ATGTTGAGGAAATGTA	alt_1787_upstream	26	32	36	28	27	36	41	27	36	19
AGACCATCTATTTAAC	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
CCCACGTATTTGAGTA	alt_1787_upstream	20	32	30	16	34	27	33	23	38	12
GGGCGTCGGTGAAGTC	alt_1787_upstream	0	4	2	3	2	0	3	2	7	1
CTCCTTCGTCCGCCCC	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
TCTCATCGTAGGGGGG	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTAATTTCAATAA	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGGCGCATACATC	alt_1787_upstream	8	7	7	2	8	1	6	6	7	5
CATTGGTACTTCTACG	alt_1787_upstream	2	4	7	6	7	1	9	7	11	4
GCAACTTTTTTGTATG	alt_1787_upstream	4	3	3	2	3	8	8	1	0	6
AGAGAATTGGCGCTCC	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
TAGGACTTCGGTCCTG	alt_1787_upstream	84	82	96	65	93	63	90	67	96	70
TCGGCTATGAGAGTGT	alt_1787_upstream	12	12	12	10	18	11	20	9	9	6
GTGCGAGCCGGCGTCG	alt_1787_upstream	72	81	78	82	86	74	110	54	95	68
CTCGTAGCTCACTTGT	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
GCTGATGTTGATTGCT	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
AACTTAATGGTCGGAT	alt_1787_upstream	56	62	54	54	59	46	63	67	81	55
CTAATCACTGCATTTC	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCTTGATGAAGTA	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCAATGGTAAGGC	alt_1787_upstream	6	7	1	7	4	2	8	3	9	1
AATATGACCAGCATGT	alt_1787_upstream	16	29	41	27	37	31	28	17	35	16
CTGAATGTTTCTATAC	alt_1787_upstream	14	8	20	11	22	6	17	10	15	8
GTAAAAACGTGTAGTC	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
AGAGTCAGACCTGCCG	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
AGAGGTAGCTACTCCG	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTTCGAATAGGTT	alt_1787_upstream	50	63	60	56	50	60	80	54	76	45
TCTATCGGTCAAATGT	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTAACATGCATCT	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTTCTTGTTCGGT	alt_1787_upstream	27	44	40	42	44	37	38	38	35	34
GTGGCTCACACCTTTA	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
AGCACACATTGTACGT	alt_1787_upstream	19	28	17	16	24	24	24	21	22	16
CACCCATGTACTATCA	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTCTGGTATATG	alt_1787_upstream	38	37	58	46	44	40	42	42	47	41
AGCTCATATTTGATAT	alt_1787_upstream	47	47	67	39	50	36	39	43	52	39
CGTCGTTCTAAACCGC	alt_1787_upstream	3	5	6	6	10	1	12	9	7	3
TTGCGGCGAAGGGTAC	alt_1787_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGCCTCCCGTTTG	alt_1787_upstream	25	31	29	29	53	26	32	29	37	23
CGAACGACTTGACTTT	alt_5996_new	34	58	28	33	51	27	62	31	74	39
TTGGGCTAAGTTGCCA	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TTCCTATCTTGAAGTC	alt_5996_new	1	8	2	1	4	4	7	1	1	2
GAATGTTTATCGGGGT	alt_5996_new	0	3	5	0	5	3	7	5	7	4
TATGTGGTCGTTGATA	alt_5996_new	33	65	56	37	56	41	66	21	67	31
CTAAGTTGGAATGCCC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TATGAAGTAATAATTA	alt_5996_new	1	6	2	1	15	8	6	3	8	7
ACACTTACAATTATTC	alt_5996_new	33	48	45	21	49	37	42	23	59	29
ACGCTGGTGTTATAGT	alt_5996_new	17	25	19	12	33	15	26	10	25	12
ATATGGGCCTGTTTTT	alt_5996_new	19	30	31	17	21	27	21	13	36	22
ACTTAATACCGTCGAA	alt_5996_new	51	108	50	35	100	49	101	44	119	41
CCTGCTAACTTCACCC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
GTGCAGATGCTACCTG	alt_5996_new	2	6	4	5	3	3	3	6	7	3
GGGCTGGGATTGCCAA	alt_5996_new	31	40	36	22	48	30	39	23	36	28
CTCCCACCATTACAAC	alt_5996_new	27	50	32	21	45	24	40	18	58	28
TCCCTCCAAGCCCACA	alt_5996_new	7	20	14	6	17	10	14	7	13	14
CCTGTGCTCAACCGCC	alt_5996_new	21	25	25	23	37	24	27	16	37	20
TGTGTCGCAGTCATCA	alt_5996_new	53	68	77	56	85	71	85	43	96	32
TTAGTTCGTTAACCAT	alt_5996_new	15	30	20	15	32	14	36	14	30	27
GAAATCAGGTACAGAA	alt_5996_new	29	37	31	25	33	15	44	27	46	11
TTCCTATCTTGAGGTC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
GCTTGGCAAACTTCAA	alt_5996_new	15	34	26	9	28	13	27	8	30	17
ACTTCCCACAATTGGG	alt_5996_new	4	13	6	2	4	5	13	5	11	5
ATGAGTGGTGGTTACT	alt_5996_new	19	32	25	20	39	23	49	25	51	12
GCCAAGTCCGGGTCTC	alt_5996_new	0	3	2	8	5	0	8	3	3	3
GATACTTGCTAGATCT	alt_5996_new	9	27	29	25	29	17	31	22	22	9
GTGTCAGGCTAAGCGA	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TACATACATGGAGCAT	alt_5996_new	17	12	18	13	35	13	23	10	19	7
GGAATTTTGTCACAGG	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TTACAGGACGTTGTTC	alt_5996_new	19	27	18	15	21	11	33	13	23	16
AATCGGACATGTTTAA	alt_5996_new	0	0	0	0	0	0	0	0	0	0
AGATTAGCGATCACCT	alt_5996_new	19	38	30	31	34	24	34	31	43	31
AAATCATGCTCGACTT	alt_5996_new	110	169	139	99	167	97	173	113	187	111
TGTAATCGAGCAGTAT	alt_5996_new	24	36	48	32	42	23	59	27	48	18
TGTGTATTTAATCATT	alt_5996_new	9	16	4	3	12	7	12	6	18	10
GCTGATGGCCCCACGC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
GCCTCCATGTGGTTGG	alt_5996_new	163	238	207	159	259	121	221	135	236	167
GAGGTCACCGCAAGTG	alt_5996_new	35	58	50	34	71	38	69	40	84	31
TCCGATTGCGTACGTA	alt_5996_new	11	10	11	12	6	16	15	8	18	12
AGATGTCGGCGCCTGG	alt_5996_new	64	105	98	82	108	74	109	65	96	77
ACCTCTTCTAGCATGG	alt_5996_new	5	4	4	2	6	3	10	6	2	6
AGGACTCCTTTTTAAT	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TCCGGTCTCGGATTTA	alt_5996_new	35	57	35	28	66	32	55	31	53	29
TTTGCTTTTCACTTCA	alt_5996_new	43	37	38	23	31	27	39	34	45	25
TCTGCTATGTTTCATT	alt_5996_new	27	61	39	27	55	20	66	26	59	29
TAAGGCTATGACGCTA	alt_5996_new	24	24	25	22	32	17	28	12	27	14
CACCGGAACGAGCGCC	alt_5996_new	11	65	5	9	59	12	44	11	49	15
TATTCCTCAAATAACG	alt_5996_new	9	13	17	12	17	13	17	6	15	6
TATAAACTGACTCAGT	alt_5996_new	27	59	43	28	40	38	52	36	77	27
CCAAACCCGTTTTAGG	alt_5996_new	24	71	39	33	46	32	47	34	51	38
CGGCTAGTTACACCTG	alt_5996_new	1	8	5	7	8	3	8	2	15	5
CCGTAGCCTGGGGTGC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
CGTCTGTTACCGTGCT	alt_5996_new	7	30	6	8	33	4	36	6	35	5
CCCGCAATTGTTTGTT	alt_5996_new	28	39	25	21	35	26	20	19	31	24
ATGTATACCCTACGCT	alt_5996_new	21	40	18	6	27	15	26	13	36	13
TCTGCTTTGTCTGAGC	alt_5996_new	45	91	77	49	76	58	95	60	112	55
TTTGGCTACTTAAGAT	alt_5996_new	23	31	39	20	32	35	58	17	49	16
AAAGTTAACATATGCC	alt_5996_new	16	19	20	17	23	25	27	13	43	18
CGGGCCAGCTTAAACA	alt_5996_new	3	11	5	4	5	8	5	4	9	4
GTCGTTTATCCCGACC	alt_5996_new	25	39	43	28	67	35	63	29	54	24
GACAATAATAACTCGT	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TCAGAACGTTCAAGGT	alt_5996_new	32	44	36	16	48	29	54	25	44	23
AGTTATTGATATATGG	alt_5996_new	40	84	53	66	66	50	111	48	103	52
TCCCTTCTGACCGCTC	alt_5996_new	35	108	80	54	110	55	89	52	125	43
AACGCCCTAGCTAACG	alt_5996_new	0	0	0	0	0	0	0	0	0	0
GTATGCTGTTGCTCCC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
CGCACTTCTCTGGGGT	alt_5996_new	0	0	0	0	0	0	0	0	0	0
CTAGAACCAAGGGGCT	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TGCAATTTTTACCAGC	alt_5996_new	10	16	16	21	21	13	13	12	22	13
ATCAGCGGACTTTACT	alt_5996_new	6	2	1	1	4	1	2	5	3	0
CTCAATACTAAGATAG	alt_5996_new	4	16	7	5	16	5	12	4	15	3
ACACTGCGAAGACATA	alt_5996_new	56	89	80	77	98	52	106	73	102	56
CCGTTCATTTTAAATC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
CCTCATACAGATTCGC	alt_5996_new	0	0	0	0	0	0	0	0	0	0
TCGAAATCAAGTGTTT	alt_5996_new	10	13	6	6	15	7	19	7	15	6
GACTACTATGCCTCTA	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
GGTGCCGTGCAGATTT	alt_4264_fdr	140	46	154	157	51	113	65	115	51	121
TTCACTAGACATAGCC	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCGTAAGCTCATA	alt_4264_fdr	64	31	90	77	50	69	36	71	40	54
TCCCCTCCCCCGGGTT	alt_4264_fdr	41	16	63	52	14	47	19	42	12	37
CCTTAATTCTTTGTGG	alt_4264_fdr	0	3	4	1	5	5	4	3	4	4
TTATGATGTACGTGTT	alt_4264_fdr	110	41	150	99	42	105	59	81	65	76
GGCACCTAACTGAAAA	alt_4264_fdr	197	76	269	232	79	186	87	201	92	179
TTAGTCAGTTAAAGCT	alt_4264_fdr	6	2	5	5	0	4	4	8	4	10
CATCGCTGTCCCAAGG	alt_4264_fdr	339	136	366	350	143	334	116	321	150	343
TTAATTAGATTCTGAC	alt_4264_fdr	76	37	99	95	25	77	35	62	30	71
CGGGCTTCCGATCACT	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCAATGTCTTCAT	alt_4264_fdr	50	20	63	60	17	36	22	38	27	36
ACCCGCGTTGGGTTAT	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTTTCTTGTGAA	alt_4264_fdr	85	14	123	92	39	67	24	68	25	85
GTCTAGTGGTGTATTC	alt_4264_fdr	111	34	133	130	42	79	54	106	47	86
TATAGCCACGGCTAAT	alt_4264_fdr	57	24	91	53	36	61	38	90	32	59
AAGGTAACTTCCCCGG	alt_4264_fdr	3	0	1	0	1	0	1	1	1	3
CGTTTTTTAATCTTGG	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
CTCAATACTGTGAGCC	alt_4264_fdr	38	23	56	54	20	35	19	38	24	50
CCCTTTATACTGCTAT	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCTGCCATGAAGC	alt_4264_fdr	75	61	100	83	61	64	74	68	66	88
CGTCACTGCAGTCGTA	alt_4264_fdr	204	92	247	253	81	156	100	206	93	157
TGACGACGGGGGTAGT	alt_4264_fdr	120	49	125	113	54	114	41	88	41	102
CAAAGTCCACATTTAG	alt_4264_fdr	159	60	187	182	62	172	55	158	65	144
CTGTCAAAGAAAAGCA	alt_4264_fdr	85	33	78	79	38	64	27	61	41	62
CGTTACTTTCTGTCAC	alt_4264_fdr	93	35	87	75	36	72	38	76	42	93
TTTGTTATAAAATTGC	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
CCAACGGCCCCTCGTA	alt_4264_fdr	3	6	2	1	5	3	2	1	9	2
GGCCGCAGGAATAGTC	alt_4264_fdr	21	9	22	25	9	19	4	14	11	18
GCCGGCTCTGGCCCTT	alt_4264_fdr	97	34	130	114	40	106	57	85	42	102
TGCGATTAGTTGGCGT	alt_4264_fdr	32	15	44	43	20	37	15	31	17	32
TCCTTGTCAGGTTTGA	alt_4264_fdr	39	9	47	30	20	37	8	23	19	22
GGGCGGCATCTGCGTG	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGGTTTCTCCCAT	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
AACGGTTCCATACTCG	alt_4264_fdr	258	131	357	307	125	251	123	292	129	237
TGCGCCCCACTCTAGT	alt_4264_fdr	374	164	464	407	154	347	191	343	148	318
CGGCATAAGGGGTATG	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
TAACTAGTTTACGTTT	alt_4264_fdr	284	95	349	315	121	284	102	293	107	262
CTTGCCGTTTATGGTG	ref_4264_fdr	46	31	66	40	20	46	14	29	33	36
TCGATCTATCTTATCC	alt_4264_fdr	2	0	1	0	0	2	1	0	0	0
CTGCCTCGTGTCAGTT	alt_4264_fdr	68	41	62	86	27	59	40	67	35	69
CGGTATATAGATCTGT	alt_4264_fdr	58	13	55	61	13	39	18	61	27	42
CCGTTAATAGGTGACA	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
TATGTAACACGTCTCG	alt_4264_fdr	0	0	0	0	0	0	2	1	0	5
TCGGGCGATGGGTATC	alt_4264_fdr	23	23	31	29	12	45	9	28	17	28
CGTGCGAACTCCCAGA	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
CTGCAATTCAGGTGGC	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCATGCGTAGGGT	alt_4264_fdr	59	35	56	62	26	57	17	66	18	65
AGCACTCGATATAAAT	alt_4264_fdr	45	14	43	41	17	49	29	43	13	41
TACCCCTGTTTGTTTG	alt_4264_fdr	168	54	233	183	59	200	84	181	90	170
ATCTAGTCATATTGCG	alt_4264_fdr	10	11	12	13	7	10	9	9	12	11
AAGTGGCTAATTGTAT	alt_4264_fdr	0	0	0	0	0	0	0	0	0	0
CACGTTGGGATGCACA	alt_4264_fdr	294	136	385	351	135	334	138	326	154	263
TCCCTTCGCTTGTTCA	alt_4264_fdr	224	83	247	220	95	211	81	182	103	214
TGGGGAACCATTGACC	alt_4264_fdr	19	13	47	28	19	40	14	19	8	43
ATCGGAGGTCTCTAGT	alt_4264_fdr	49	18	67	56	19	48	30	59	25	38
CATTTTGGTCATAACC	alt_4264_fdr	55	26	77	60	24	60	40	76	22	74
ATCCGTAACCGGTACT	alt_4264_fdr	66	39	62	72	34	61	36	53	25	53
CGTACAATCAGATTTG	ref_1819_upstream	15	13	23	21	11	18	10	18	9	20
GTTTGTCTCGATCTAG	ref_1819_upstream	141	98	114	137	101	143	106	125	116	115
CTGAATTTTCTTAATG	ref_1819_upstream	36	29	50	34	20	40	32	47	36	37
GTCCACGGACCCCCTA	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
AACCAAGGTTTCCCGC	ref_1819_upstream	61	31	47	38	38	41	40	46	20	32
CGGGTAAGTTGCACTT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TACCTGCTGATACGTG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
AGGACATGCTGTATAC	ref_1819_upstream	57	69	93	59	52	58	53	71	39	52
TATCGCCTAGAAGTTG	ref_1819_upstream	108	63	145	93	81	89	56	101	72	99
ACACACACTGATTGTA	ref_1819_upstream	28	18	51	34	28	38	21	26	28	35
CTCGGATGCCCCATCA	ref_1819_upstream	63	68	77	73	56	71	62	58	58	48
TCATATCCATAATCTT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TCAATTGTTTCAAGCT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GGGACGGCTTGGGCCT	ref_1819_upstream	34	27	65	47	25	47	26	44	22	46
TCTAGATTGCCCCACC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTCATGCGCGAGTTCT	ref_1819_upstream	88	82	78	84	77	97	82	88	78	73
ATAGGTTGCATTCAAT	ref_1819_upstream	53	36	67	56	33	50	42	42	26	54
CTGGTATGTCAAATGG	ref_1819_upstream	28	18	40	40	15	37	24	63	17	41
GTATTCTATGCTGCGG	ref_1819_upstream	13	9	19	15	13	14	8	11	8	7
TCACGTGACAAGCCAG	ref_1819_upstream	91	68	98	111	61	92	55	74	76	100
GTCTCTATTCGTGGGG	ref_1819_upstream	44	39	82	65	27	69	39	65	36	59
ATCTTCAACTGTTATT	ref_1819_upstream	11	8	13	11	6	3	5	9	4	7
TTATCTAGTACAAATT	ref_1819_upstream	19	27	22	25	16	13	19	20	13	22
GGCGTTAAGTTTCATG	ref_1819_upstream	1	3	1	1	0	1	1	0	0	0
TTTAACACCCTGCAGT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GACATTATGGAAGCCT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCAAGTGCTGGTC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
CCATCACGGGCGTGGT	ref_1819_upstream	3	2	2	8	3	5	1	8	1	5
TAATGGTAGATAGGGA	ref_1819_upstream	109	71	110	142	68	123	80	123	71	94
TTCTAGTGCCCCGAGT	ref_1819_upstream	29	22	28	19	21	25	23	25	18	32
TTCCGCCCAGTCGGGT	ref_1819_upstream	47	29	35	42	19	38	25	41	27	46
TGCCAAGGGTCATTCC	ref_1819_upstream	62	57	88	89	67	60	58	75	67	64
ATTTGCAGATTCACTG	ref_1819_upstream	29	26	36	44	25	37	21	28	29	26
AAGAGTATACTGATTT	ref_1819_upstream	34	14	41	36	16	27	17	19	24	22
TCATGCGGCTCTATAC	ref_1819_upstream	35	34	37	42	29	31	42	29	40	34
GGTCAAGAGCCCTTCG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGTTCATAATCAT	ref_1819_upstream	11	7	8	12	6	11	12	7	8	5
CGTCCGCATGGCAGAT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GTTACGTATAATCATC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCTCTTTTGCGAA	ref_1819_upstream	28	7	23	9	15	11	16	13	15	16
ACAGCATTTTTGCATC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GACATCTTTAGCTACT	ref_1819_upstream	30	14	33	26	12	14	21	24	19	24
ACCTTGAGGAGCGTCG	ref_1819_upstream	2	0	3	3	3	0	1	2	3	3
GAGGATGTATTGCGAG	ref_1819_upstream	24	23	23	26	14	29	21	17	20	33
GGTGGGCCAGCATTCG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TATTAGGCAACGTGCG	ref_1819_upstream	11	22	23	14	14	16	14	8	8	14
GTTTAAGGTGACAAGC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GATAGTGTTTCAACAA	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GTTACCATTAGTAGAC	ref_1819_upstream	6	3	5	2	1	5	3	2	1	5
GAACAGGTCATGTTGT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCGCCCTTAACTG	ref_1819_upstream	75	62	92	91	63	74	68	80	60	78
TGCACGAGTTTGGCGT	ref_1819_upstream	33	29	35	34	41	47	33	38	30	42
ATTACGAAAATGCTTT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTTCCAGCTTACT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
CCCATACGCTGGCCCA	ref_1819_upstream	132	90	134	123	91	139	79	122	94	124
AGCACTCTGACTCTGA	ref_1819_upstream	70	37	62	77	55	48	85	72	68	59
GCTACTAAATGCTTGG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GATGCCTCCACATGCG	ref_1819_upstream	2	5	10	5	11	4	6	10	6	6
TTAACCGCCATTCATT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCTTGTCACGCGT	ref_1819_upstream	17	10	23	14	12	16	10	13	7	13
TTATGTAAACATTCCT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
AGACCTTCAAAATCTG	ref_1819_upstream	3	0	1	2	0	5	2	3	1	2
TTGGGACATCGTATAA	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTGACGGATGGAGTTC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
CCGTACGGCACTTGCC	ref_1819_upstream	30	49	30	39	48	23	53	31	49	28
ACGTTCCGCTGACTGG	ref_1819_upstream	58	39	43	36	49	47	31	37	34	53
TGAATAATCTGTGCGG	ref_1819_upstream	29	12	19	22	18	19	17	21	24	8
GTCTAGTTGTTAAATT	ref_1819_upstream	12	16	18	22	15	27	20	18	10	16
ATGTGTCTGTAGCGGA	ref_1819_upstream	242	153	301	248	186	200	191	186	159	210
TTTCGCACCGATATCT	ref_1819_upstream	7	8	14	6	7	15	6	4	11	15
TAGTAGGGAACCACTG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTAAGGGGCATCG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGTTCTTTATTTC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAAAATTGTGGTA	ref_1819_upstream	14	12	18	20	20	28	11	27	21	25
TTTTGCTACAAAATCT	ref_1819_upstream	49	22	55	35	34	33	28	48	40	37
CCTCACGACAGTTTTC	ref_1819_upstream	16	13	19	11	9	11	10	14	9	20
TCTGAGCTTAGGGAAT	ref_1819_upstream	70	38	94	85	40	72	50	63	56	66
TCCACCTGGGTATGTG	ref_1819_upstream	36	12	28	23	20	22	19	28	17	29
CCCGGGATATTTGCTG	ref_1819_upstream	48	21	52	40	24	33	42	39	15	33
ACTGTCCTTGATATTG	ref_1819_upstream	33	41	53	44	36	38	35	49	29	36
TACTTAGGCGCGCGTC	ref_1819_upstream	20	19	33	27	13	14	13	16	22	25
TGCTAATGCAAGCTGT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
CATGGGTTGATTAGGG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCCGTAACGGCGC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCGCGGGTACTAG	ref_1819_upstream	17	26	19	16	29	17	35	21	29	14
TAGACAGGCGTTACAT	ref_1819_upstream	13	4	10	12	7	15	6	16	19	10
TTTGCCTGATTTTTGG	ref_1819_upstream	14	8	20	11	10	11	14	9	11	10
TGTACAAACGGGTAGC	ref_1819_upstream	38	15	31	33	15	27	23	33	19	33
ACATCCCAGTTGGGCC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCCGCGTCAGATC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TCTCATCTTTCATCCC	ref_1819_upstream	20	17	38	27	16	25	16	26	21	27
CGAGTATTCACCCATT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAGCACCATAAAT	ref_1819_upstream	6	1	11	8	3	14	8	9	4	9
GAACCCCGTGAAGAAG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
ACAGCGAGCGTGGCTA	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCTTTGTCGTTT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGGATTTAGGAGT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GGAGAGTCGTACGGCT	ref_1819_upstream	140	75	180	136	78	134	77	137	101	129
TAAGTAAGGAATAGGC	ref_1819_upstream	29	25	64	26	17	33	24	46	25	34
GTGTAGATAGGCCTAT	ref_1819_upstream	2	5	2	1	7	2	10	9	7	4
GCAGGGCTGATTTGGT	ref_1819_upstream	9	5	9	13	5	7	6	11	5	4
CTCAGCCCTCTTTCCT	ref_1819_upstream	11	12	12	10	8	6	10	6	20	4
TCCAATGAAGGCGCGT	ref_1819_upstream	12	6	22	15	13	11	17	7	8	6
AAGCGCACCCGCATGC	ref_1819_upstream	34	31	48	43	21	33	35	30	37	41
GGCCAGCACCGATAAT	ref_1819_upstream	50	19	50	35	28	25	27	38	33	43
CGGCTACCTCGCATAG	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGCTTCTATGGCA	ref_1819_upstream	126	80	134	117	74	115	82	108	94	90
CGTTTTTTATCAAGCC	ref_1819_upstream	10	3	17	9	6	8	7	12	6	10
GCCTGCATATTTGACA	ref_1819_upstream	11	7	11	8	14	10	7	20	7	7
ATCCAACATTTATGAC	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAAGTTCTCTACT	ref_1819_upstream	10	11	7	10	4	4	17	18	7	13
AGCCAGTGAGCACGTT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTTCAGGGGTGAA	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
GATAGTTCGCCTCTCG	ref_1819_upstream	19	8	24	10	16	18	19	18	17	14
AATTGTGTCGGGCTTC	ref_1819_upstream	33	24	50	58	33	33	41	33	22	39
CGCTTGGTAGTCAAGG	ref_1819_upstream	77	62	95	79	48	83	73	59	72	67
TCCAACGACCTCTCGT	ref_1819_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCGGAGTTAAGTA	ref_1819_upstream	10	5	3	6	4	6	5	9	6	11
TTGCAGTCTGCGATCG	ref_913_negative	2	5	6	4	11	12	4	2	6	3
GTGGAATCTATACCGG	ref_913_negative	5	14	4	11	12	6	6	11	15	9
TGTTCTGGCTCGCTTT	ref_913_negative	59	68	63	57	89	54	102	53	108	54
ATCAGGGTCGCCTGAT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GGTGTGGTGATTTCTT	ref_913_negative	6	11	7	11	13	9	27	10	20	8
CCGTGTTGCCCGCTCT	ref_913_negative	2	8	2	1	4	3	4	3	9	5
ACTCGGCTCAGGTATA	ref_913_negative	5	4	4	5	2	4	7	5	9	3
CAATGGAATCTCACCT	ref_913_negative	30	46	26	39	46	21	52	33	49	19
TCATTATTTATACTAG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TAACTGTCTCGTAGTA	ref_913_negative	40	42	31	32	32	27	61	26	40	30
ACATCCGTCCCATGTT	ref_913_negative	3	8	5	2	12	7	12	5	4	1
TATTGGTCTGCGCTAG	ref_913_negative	9	22	11	11	17	12	21	8	17	14
CTCCATATGTATTTCT	ref_913_negative	14	22	12	11	16	11	10	20	27	12
CCCAGGTGCAGGCAAG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TCGCGGTTACAGATCC	ref_913_negative	0	0	0	0	0	0	0	0	0	0
AATTGGTTATAGATTC	ref_913_negative	4	1	2	2	7	2	3	0	2	2
TCACGGATTACCTTCG	ref_913_negative	8	29	11	9	32	9	22	5	21	6
AGTCCGGCATCGGAGT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TTCTTTACACCAGGTT	ref_913_negative	9	21	19	10	29	16	13	14	15	18
TGCCACCAACGAGCAT	ref_913_negative	16	15	12	11	12	15	8	6	11	6
ATAATCTTAAGCTTTC	ref_913_negative	17	26	18	13	24	10	27	23	20	16
TAAAAAATTTGGGTGT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TGGCCTCCTTATGTCT	ref_913_negative	25	33	22	23	44	24	39	18	36	17
AATACTATCATTAGTC	ref_913_negative	5	17	5	11	15	6	14	12	18	8
TTAAAAATTTGGGTGT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TTCTCTTCCAGATGCC	ref_913_negative	11	21	18	5	12	10	12	12	15	8
ATCGCGATTCACTATG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CTCACAGAGTCCTGGC	ref_913_negative	58	81	66	54	71	51	73	49	98	44
GGATTTCATATGCAAC	ref_913_negative	10	13	15	8	19	12	26	17	16	11
ACCCGAGTGTGCCGTT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GGAAGTGACCCAGCTT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TTGATTTTCTGAGTGG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GTTTAGGATGCGTTCA	ref_913_negative	4	8	10	7	4	5	11	4	7	7
CCAGGTTCATTCACAT	ref_913_negative	15	23	23	13	36	15	22	15	30	11
CACGGCCACGCTGCTG	ref_913_negative	29	35	45	26	44	24	58	21	44	37
GTGGTCGCTTTATCCT	ref_913_negative	94	100	120	84	137	100	126	88	133	86
ACTTATTATCCCCATT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CCGCTGCCTCCACAGG	ref_913_negative	7	4	3	11	12	3	12	4	12	3
GCGACAGATCTTACGG	ref_913_negative	59	70	75	81	74	60	96	59	92	48
ACCGTGGGATCGCTAC	ref_913_negative	14	22	8	12	17	13	22	12	18	8
CGACATTTGGGTGTTT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CTCGCTCTTGAGAGAA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TCTCTAGTGGTGATCC	ref_913_negative	3	5	3	8	4	3	9	5	10	4
GGAGGCTGTTTATGCT	ref_913_negative	60	71	74	44	91	67	87	68	108	52
GCCATCTTAAGCGCGG	ref_913_negative	1	3	1	2	0	2	2	2	1	1
GCGAGTATATGAATTG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CTCCCACGTCATCGTG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GGACGGAATAGTTTGG	ref_913_negative	77	138	104	97	130	75	131	66	154	64
TCTCTTTAACTTTCGG	ref_913_negative	26	42	13	25	45	19	22	17	44	19
AAGTCTTACGTAAGAT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TGACCAGTTTACGGAA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TCGAAAGTAGGGGGGT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TTGCGTTTTATTAACG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
ATTTATCTACTGTAAG	ref_913_negative	111	131	119	115	178	80	172	106	140	74
CGCATTCATCGCCTAG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
ATTGGATCGTTGTGAC	ref_913_negative	2	6	7	4	2	6	6	4	8	2
TCATAGATTTCGTTTA	ref_913_negative	15	40	27	24	47	24	47	24	60	24
ATAAAAATTTGGGTGT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TCGGCGACATACAATC	ref_913_negative	34	53	44	42	45	31	66	31	82	43
CCGATTTTATCCTACA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GTTCCATTACAGGGTA	ref_913_negative	5	2	1	3	5	3	2	2	3	1
AATTCGGCTTATGTTC	ref_913_negative	2	7	4	5	13	6	12	5	12	7
TTTTCAGGTGACTAAC	ref_913_negative	8	14	9	6	12	6	15	4	14	6
CAATCGACTGCTACAG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TCACTTAGAAATTCTG	ref_913_negative	39	79	39	39	79	47	70	37	92	29
GTCAGAGAATCTCTTT	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CTGCGTCTGTTTTCAG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CCTTTTGTCTAGAACA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GCATCAAGGTATAATG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TGTCTTCCTGCCGGAG	ref_913_negative	11	20	15	18	19	9	27	14	20	13
GACACATCTTGCTGGA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TTAAAATTTGGGTGTA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GAATCAACCCCTTCCA	ref_913_negative	2	14	10	5	12	7	12	8	4	1
CTGCTGCACGAGTATT	ref_913_negative	38	55	52	34	46	50	64	30	71	27
GTGCGCCGCCTTCGCA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CAAAGGTCGTTCTTTT	ref_913_negative	14	36	29	19	26	24	27	16	37	28
TAATGTTTTCTGGCGG	ref_913_negative	20	31	29	18	35	33	26	17	32	25
CTCTTCGAGCTGGACA	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GCAGTCAGCGTCCGTT	ref_913_negative	68	145	105	93	144	67	141	69	150	90
CCCCTAAAGAAATTTG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
TTGCCGCGAAGGCAAG	ref_913_negative	36	52	32	24	47	18	58	21	62	22
CTTGGGTACATCTTTG	ref_913_negative	52	74	41	43	83	48	75	41	80	38
TAAAGAGTGAAGTGGG	ref_913_negative	28	55	39	28	32	23	54	30	69	28
CCCGGGTGCAGGCAAG	ref_913_negative	220	513	269	239	580	202	546	246	521	202
GCTATACGTGGTTCGG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GTTCTCGAGCTCGCCC	ref_913_negative	0	0	0	0	0	0	0	0	0	0
GGCTCGTAACACTCGC	ref_913_negative	0	0	0	0	0	0	0	0	0	0
CATGCTCCCCAACTTG	ref_913_negative	9	13	6	7	25	2	21	12	25	7
TACGTGCGGTTCGTCA	ref_913_negative	181	230	171	136	191	140	233	107	225	100
AAACATACTACAAGCT	ref_913_negative	8	16	20	18	16	12	18	11	18	13
GTATTATTCCTGGTTT	ref_913_negative	18	14	17	27	26	13	18	16	29	19
TGTCGCGTCCCCGCTG	ref_913_negative	0	0	0	0	0	0	0	0	0	0
ATTGGGTGCAGAGTCA	ref_913_negative	42	57	38	42	55	33	47	27	54	33
GTTCACGTGGCCCATT	ref_913_negative	26	42	27	23	30	15	32	24	51	16
AGGTGCTTGAGGAGTT	alt_5773_new	34	72	53	59	62	40	57	41	60	40
GATTGTCACCCCCTGA	alt_5773_new	14	26	15	18	21	21	28	5	20	9
AGTTTCATCGGGTCTT	alt_5773_new	6	4	4	3	10	7	12	8	14	3
TAACACTGATACAGGG	alt_5773_new	27	44	50	33	72	33	45	31	57	28
CCTGCTCTGGTACCTC	alt_5773_new	0	0	0	0	0	0	0	0	0	0
CCGCATTAGTGTCCGC	alt_5773_new	36	55	49	38	62	24	73	30	73	29
CTCATTGTTTTAGTTC	alt_5773_new	73	103	82	69	118	67	160	51	152	63
GTCTGCCAGAGTCGGT	alt_5773_new	17	23	23	19	29	11	22	19	23	18
TTTCGATACGTGTGCC	alt_5773_new	62	97	87	46	107	50	104	50	95	43
AGTCTCTTAACTCGCT	alt_5773_new	28	47	23	20	43	24	36	23	48	26
ATTCACAGCTGATTGT	alt_5773_new	8	28	11	12	18	15	22	6	14	14
GCCCGTGTCGGAATGG	alt_5773_new	33	54	34	26	46	25	72	24	61	20
CATCTTGTCATCTCAC	alt_5773_new	7	11	19	11	25	5	15	9	18	6
CTTTCTGTTGGATGAC	alt_5773_new	10	8	5	5	7	2	8	5	8	9
CTTTTCATTGTCCGTC	alt_5773_new	49	58	48	43	59	51	80	40	69	34
CTTATTTGGGTCCGAT	alt_5773_new	50	91	37	52	90	44	95	43	89	22
CTTCTTTTGTGCGCTC	alt_5773_new	16	34	19	15	27	19	22	16	21	14
CCTAACTGCACTAGCG	alt_5773_new	9	21	16	12	30	18	27	9	16	13
ACCAGGTAGTCTTGTC	alt_5773_new	13	23	20	19	33	14	36	24	24	15
GGGGTACTCCGGCCCG	alt_5773_new	27	36	26	33	29	34	51	31	42	25
GACGATCAACTGCACC	alt_5773_new	0	0	0	0	0	0	0	0	0	0
ATTTATCTTACGCTCT	alt_5773_new	6	6	1	6	6	6	6	4	8	6
GTGTGTATTCCAGGGG	alt_5773_new	55	106	65	52	79	53	86	51	116	40
GCGTAAATTTTCTTGT	alt_5773_new	7	15	13	7	12	10	20	7	18	6
TACTTTTGGCCCGGGA	alt_5773_new	132	199	174	141	255	122	276	143	246	118
ATCTTCAGTGTTCGCC	alt_5773_new	14	27	15	12	25	19	39	19	32	17
TGGCCGGATCCCCTGG	alt_5773_new	29	63	60	42	49	35	54	37	56	30
TTCTTAGGACATGCAG	alt_5773_new	0	0	0	0	0	0	0	0	0	0
GGTTGTTTGCTTACTT	alt_5773_new	40	53	42	37	70	34	58	30	61	26
ACACGTGCCCTCCTCG	alt_5773_new	13	16	6	9	22	8	18	10	25	9
TCAGTTTCGTTCGGGA	alt_5773_new	61	75	51	42	66	46	80	41	99	43
CACAAAAACCCGTAAT	alt_5773_new	26	19	21	11	37	14	38	15	28	8
TTTCGTACTACGTTTC	alt_5773_new	34	57	47	50	70	40	64	46	46	22
CTGCGTCAAAATGGCC	alt_5083_fdr	6	4	13	4	5	2	0	2	2	8
CGGAGCTTGAACTCCT	alt_5083_fdr	22	17	39	27	24	13	10	18	24	16
TTATGTGACCTATCAC	alt_5083_fdr	31	31	46	39	27	25	33	30	29	31
ATGCTATCCTGGCTGG	alt_5083_fdr	64	37	81	60	53	71	53	69	43	49
AATGCAGCTAAGTGTA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGGGTCTATACT	alt_5083_fdr	52	27	83	51	60	49	41	36	42	35
CTCTAAGTTTCATCAG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
AACAGTATCTTAACGT	alt_5083_fdr	36	48	49	34	38	38	36	31	45	29
GGTTGTGCGGCTACCC	alt_5083_fdr	10	15	12	11	7	6	17	11	8	5
ACTCGGTAACGGGGAC	alt_5083_fdr	46	21	57	33	27	43	27	46	35	44
ACCCAGAATATACAAC	alt_5083_fdr	1	4	6	11	4	3	7	2	4	6
TACTCCCGCCACTACA	alt_5083_fdr	213	119	241	214	130	188	138	228	117	153
CTTTCCATTCTTCCAA	alt_5083_fdr	22	21	13	17	7	21	16	16	18	26
GCCCGCGGCTATTACT	alt_5083_fdr	185	111	229	191	117	164	120	169	143	146
TACACGTGATATAGTA	alt_5083_fdr	66	54	79	93	53	73	54	68	66	62
ATCGGTCAACCCATTC	alt_5083_fdr	13	8	13	15	7	11	12	8	6	12
TCAGAAAGCTACGAAA	alt_5083_fdr	11	13	10	11	11	8	9	10	8	10
AGTTATTGGACGTGGT	alt_5083_fdr	18	18	17	21	14	16	18	24	20	20
CCTTTATTTTATCATG	alt_5083_fdr	54	43	83	65	46	52	34	63	49	57
GCATGCTTCTGCATCG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGTATATGCCGCT	alt_5083_fdr	81	63	99	70	56	89	70	99	67	84
TCGTCCTAATTGCGAG	alt_5083_fdr	16	7	15	11	11	18	4	12	6	13
GTAGGCCCATGGCGTC	alt_5083_fdr	14	11	22	23	7	27	17	27	18	10
GTTTTTACGGCGTCAG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GAACCTCGTTCACATC	alt_5083_fdr	37	30	50	29	29	24	27	28	29	28
CCTCAGGGTATGCCGC	alt_5083_fdr	15	10	18	29	9	22	10	20	21	20
CTGCTTTATGAAGTTG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GATTCTTTTGTGCTTA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTCGAATTTCGG	alt_5083_fdr	29	29	48	36	22	36	24	33	19	26
GTCTACGTCCCTTTTT	alt_5083_fdr	25	15	22	21	21	12	16	22	18	22
GTCACACCTCTGCTGT	alt_5083_fdr	15	9	16	10	10	7	11	19	6	11
GTCCATGTAGGAATCT	alt_5083_fdr	19	9	12	6	6	11	5	11	8	5
AGATATGCCGCTGCAA	alt_5083_fdr	70	58	93	87	78	78	67	81	65	67
ATTCCACTAGGCGTTG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGGGTTATTCTAA	alt_5083_fdr	47	38	39	50	27	49	31	35	44	41
CTCGATTCAACGCTAT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTAACGGTACAACATC	alt_5083_fdr	13	10	22	12	9	21	17	10	12	14
ATAGCCGTTACCTCGG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CTCGAGAGATTAGCAG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GATGTGACCGCCTCGC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGTTGCCGTCCT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTCATTACATCCTGGC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGTGGGTCCCTGA	alt_5083_fdr	10	12	20	11	7	15	13	15	12	7
TGAACCCCGGGGGTTA	alt_5083_fdr	9	4	5	7	10	4	13	9	7	9
TTCGTTCTACTATCTA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCACTCGTGTTAT	alt_5083_fdr	74	64	80	67	49	80	68	76	59	61
CGGCTAATTCGAGGCG	alt_5083_fdr	22	12	19	20	5	13	16	18	14	15
GTTTCTCCCTCGTCCT	alt_5083_fdr	2	8	2	1	5	4	3	2	4	1
TTGGTACGATGTCTAG	alt_5083_fdr	9	5	5	5	6	6	4	5	6	9
GAATTTTCTTAACCTC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCATTCCTACCCCCTT	alt_5083_fdr	33	22	53	42	46	44	36	32	40	40
CATGGTTATGAATAGA	alt_5083_fdr	61	44	74	62	28	72	34	51	58	45
CAACCTGATTAACGTC	alt_5083_fdr	18	13	22	23	17	22	22	17	26	20
ATCGGTTACTTCAACT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTATGATATTTTGCAC	alt_5083_fdr	41	22	66	47	18	46	35	41	36	30
ACTGGGATATCTTATC	alt_5083_fdr	22	16	29	23	20	17	14	26	10	15
GTTTCCCTGTATTTGC	alt_5083_fdr	60	57	96	70	63	55	65	53	48	58
TTTACACGGACATTTC	alt_5083_fdr	29	25	39	29	24	26	28	28	29	29
TGGTCAGAGTTGCTGT	alt_5083_fdr	80	62	94	109	77	90	70	68	57	64
ATGGGTATTGCCAATA	alt_5083_fdr	131	74	115	128	66	114	79	110	65	98
GCTAGATTGGACTGAG	alt_5083_fdr	41	19	37	38	32	33	32	30	29	22
GTACTCGTGTTAACCG	alt_5083_fdr	40	40	33	34	25	34	21	28	32	25
CAGTTGCTAGGTTATC	alt_5083_fdr	5	5	11	5	5	9	5	4	8	9
AAAGACGGAGCCACCC	alt_5083_fdr	88	66	101	70	81	74	43	80	62	74
GGGGAGGCGTCATCCT	alt_5083_fdr	18	17	30	17	14	26	20	19	14	22
TGTATTTGGTTGGTGG	alt_5083_fdr	217	137	255	219	172	221	155	208	144	173
ACCGGTTTGGTTTCCT	alt_5083_fdr	69	43	67	72	35	70	61	76	51	69
CGGTCGCCCTAGAGCC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCGAATAGTCTCGCAA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CTTGAGGCTCTATAAT	alt_5083_fdr	34	19	29	19	16	22	26	23	15	16
TGTTATCTCAAGGAAG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCAAACAGGGCATTCC	alt_5083_fdr	14	10	14	15	14	14	14	13	8	10
GGTTTGGATTTGCCAC	alt_5083_fdr	27	33	27	31	24	39	10	29	24	24
AGCCGTTCGGCCAAGC	alt_5083_fdr	14	26	27	22	14	17	22	19	19	15
AGCAACCAGTGTTCTG	alt_5083_fdr	2	3	5	0	5	3	3	4	4	1
GGTCATTCTCCATTGA	alt_5083_fdr	21	17	18	20	24	28	14	15	20	29
CTCATATATATGCGGT	alt_5083_fdr	8	9	11	11	5	9	3	12	7	14
GCGCGCATTCTAGAAC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TGCACATCATATTCCC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
ATACTGGGTACTTCGC	alt_5083_fdr	29	30	52	37	24	44	25	29	27	40
CGGCAGTTTGTCTCAT	alt_5083_fdr	12	4	17	19	10	13	10	14	14	13
CCTATCCCATCGCCGA	alt_5083_fdr	50	32	34	47	28	31	31	36	41	28
CTGCTATCGTTGCCAG	alt_5083_fdr	1	2	4	1	1	2	3	1	1	5
GAAATCGATTAAATGG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGCATATTCCTTCTAA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCTTCCACAAGCG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCGTATTCAAGGAGCC	alt_5083_fdr	31	22	48	38	25	38	27	34	31	37
CGGAGATATGCCTTGT	alt_5083_fdr	19	25	23	17	16	24	15	10	24	22
CATATCTGTATAAGGT	alt_5083_fdr	30	26	35	33	19	22	22	32	30	39
ATACGGTCGTTGAATT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTCACTCTCTCTAAGT	alt_5083_fdr	70	54	92	83	53	71	55	72	74	65
GGTTGTCTCTATTTTG	alt_5083_fdr	87	55	135	108	56	99	55	100	63	84
CTACGACTACCGAGTT	alt_5083_fdr	9	17	20	12	12	16	13	17	14	22
CCCGGTGAGGCTTTGA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TGGACGATGAACCTTT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCAATGACTAAGGTAG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGGCGGGTTTCGA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTGCGTTGTGAC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCACCCTGTTCGCCTG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGAACATAGACAG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTCAAACCGAGT	alt_5083_fdr	38	16	42	39	19	28	19	30	28	26
TGCGATCCATTCGCCG	alt_5083_fdr	9	8	5	10	13	5	11	7	7	8
TCACGGTGTTACCACT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CGGTGAGTGTTATTCT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GCATCAGGTGATGGGT	alt_5083_fdr	25	14	24	34	11	16	9	23	10	9
AGTGATCAAAGACTAG	alt_5083_fdr	117	81	205	134	113	114	103	120	91	134
TGCTACCCGATGTTTC	alt_5083_fdr	2	3	2	1	2	0	4	1	5	1
AGTAGTAATTCGTGCA	alt_5083_fdr	86	64	94	107	73	100	62	66	56	80
GGTTACACCATCCTTT	alt_5083_fdr	17	15	14	16	15	13	13	17	15	15
TCAACCGCATCAAAAT	alt_5083_fdr	15	21	25	18	27	20	19	28	23	12
TGGCAACACCTTCGTT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGTTTCATACGAT	alt_5083_fdr	14	15	20	18	12	23	14	14	14	15
TCCGTTTTGAACATTT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTGATAGGCTTGC	alt_5083_fdr	15	15	19	16	8	19	15	12	19	13
TTGCTTTCCTCAGCGA	alt_5083_fdr	70	47	84	69	35	51	40	51	50	50
CGAGCTGCTTCAGTCA	alt_5083_fdr	10	9	10	10	6	6	3	6	10	11
TATTATCCACAGTTTG	alt_5083_fdr	10	13	8	13	2	7	8	12	6	10
GCCCGATCCTGGTTTG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TGCGGCACCTGTAGTG	alt_5083_fdr	20	17	33	33	19	29	26	26	26	22
ATCGGTCCACGATGAG	alt_5083_fdr	34	24	57	51	26	41	33	46	29	35
CCGGAATATGAACTGC	alt_5083_fdr	1	3	2	2	2	3	3	5	1	1
GCCTGCATGTCTGTTT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGCATACCGCACA	alt_5083_fdr	31	22	40	33	20	35	27	43	25	24
GTTTCGGATCATTTAT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GTACTCTGGCAGACCA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTGATGCTTGGTT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTCATTTGTATG	alt_5083_fdr	61	32	74	45	45	55	40	65	44	49
TAGAAGCCGCCGGGGG	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTCCGTCCAGTTT	alt_5083_fdr	16	25	30	28	21	21	18	20	22	24
GGAGTAAAGCCGGATT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGCTCGATGCGGT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGCATTATGTTATTCG	alt_5083_fdr	49	37	81	56	38	73	49	36	40	53
AACGCGCTGTCGGGAT	alt_5083_fdr	5	8	13	8	6	13	5	7	8	13
TTATACCTAGATGGAT	alt_5083_fdr	8	7	9	9	4	3	3	10	6	7
AGGGCCCCCGAATCCT	alt_5083_fdr	362	241	476	381	247	387	282	330	325	328
CAGCCATTGCTTAAAA	alt_5083_fdr	24	21	27	19	20	20	14	11	15	16
CGGCAATTTCCGGTAG	alt_5083_fdr	26	11	22	17	17	21	12	14	9	21
CAATTTATGTGCCGGG	alt_5083_fdr	184	148	243	226	172	193	142	195	148	200
GTGTCCAGGACTGGGC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCAATTCGTAGGTTAT	alt_5083_fdr	17	10	16	13	10	25	15	19	11	18
GTACTAACGTTCAGCG	alt_5083_fdr	11	3	14	8	12	20	8	20	9	12
GGCCGGGAGCAGCGGG	alt_5083_fdr	10	5	21	13	9	6	6	17	4	4
AGGGGCCTGTCGTATA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTTGCGTTTAGTC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTTACATTTTATG	alt_5083_fdr	250	163	266	217	158	206	141	250	185	204
TTTCTATTGATACTAG	alt_5083_fdr	12	6	8	20	7	4	9	6	13	6
GCACCCTTCCGGTCTC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GGTTGCAGGCATATTA	alt_5083_fdr	25	30	47	48	24	31	19	39	25	29
ATCCTTGCCAATTACA	alt_5083_fdr	33	23	39	33	21	26	13	19	27	33
ATGCTTTGACTGTACT	alt_5083_fdr	1	1	6	1	0	5	4	5	2	2
TTCAGGTGCCTGATAC	alt_5083_fdr	24	29	45	45	32	33	37	36	22	32
TTTGTCTATTTATCGC	alt_5083_fdr	5	15	12	4	17	6	13	4	15	8
ATATTCTCAAATATCT	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCACCCCTTCCTC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
GAAGATAGAACGCTTC	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTATGGCGATCCT	alt_5083_fdr	77	57	99	82	61	74	65	71	46	63
CGAGACGTGTAACTGG	alt_5083_fdr	19	18	33	26	34	30	16	22	25	24
ATCAAGTCGGGCGTTA	alt_5083_fdr	1	1	2	1	0	0	0	1	1	0
TTTTCTAGATATCTCA	alt_5083_fdr	0	0	0	0	0	0	0	0	0	0
AGCCTCTCGAACACCG	alt_5083_fdr	7	8	11	10	15	15	17	15	12	8
CGACAATTTTAGATAT	alt_5083_fdr	65	31	50	56	23	48	25	58	29	28
GTTTGGTGCTTTTAAG	alt_5083_fdr	230	188	308	243	210	220	194	222	231	202
ATTTTGGAGTTGAAAT	ref_3351_fdr	14	18	29	13	13	14	15	27	25	24
TTATACGTACATTCCC	ref_3351_fdr	13	45	13	15	40	13	33	11	46	9
GCGGGTACGCCAACGG	ref_3351_fdr	36	30	45	49	29	35	22	34	34	33
TGATCAACACCCGTTC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCACCTTTATAA	ref_3351_fdr	22	14	36	22	16	10	18	24	22	15
TTGTGCATCGCCTCCT	ref_3351_fdr	11	8	17	15	17	17	15	14	15	14
GTCAGTGTTCGTTTAA	ref_3351_fdr	7	4	4	4	4	6	7	7	3	2
GTTTTATTTATCATTC	ref_3351_fdr	67	45	93	74	54	54	56	79	61	57
CTCCAAATCTAGAACA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
AATTTTTGCCGTGTTC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCACAGGGGAGCA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCCGTTTGACTAT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGAACAAGAACACAGG	ref_3351_fdr	197	163	248	196	175	187	150	178	174	160
TCTGCGGTGGGCTCGA	ref_3351_fdr	38	45	59	50	42	49	45	44	32	47
AACTCTCTGTGCAGTT	ref_3351_fdr	30	26	38	30	25	25	31	20	24	27
TCGCCCTTAATATCCC	ref_3351_fdr	100	78	94	88	49	64	82	72	71	75
TGCTACATACTTTTCA	ref_3351_fdr	18	14	27	17	17	18	11	25	20	14
ACATGTCGCAATTTAA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCCCGGAGACGTG	ref_3351_fdr	18	17	21	50	29	35	32	25	18	14
GGTCTTCTATTTTCCT	ref_3351_fdr	33	17	34	24	25	28	16	21	20	30
TATGATCCGGTCTGCC	ref_3351_fdr	75	60	81	84	65	64	71	73	55	64
ATTCCAATCTCTACAA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCCTGGCTAAGAA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TATGAGTCACTTTGAA	ref_3351_fdr	31	29	37	32	30	41	20	24	29	27
GTTTGATGGCACGCGA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
GATAAATTTAATCACG	ref_3351_fdr	35	25	45	30	27	46	28	49	38	37
ATAATTCATTGATCAT	ref_3351_fdr	301	229	331	354	274	289	260	288	258	271
CGAAGTTGCCGAACAA	ref_3351_fdr	27	13	24	13	18	13	17	17	7	20
AGAGTTTTAGCCAACA	ref_3351_fdr	54	35	58	61	53	53	48	69	62	53
CCTTTTACTATTATCC	ref_3351_fdr	19	19	14	21	21	14	18	20	19	14
CACCTGATTTGTTGAG	ref_3351_fdr	8	12	18	15	9	7	9	6	12	5
ACTGCAGCAGCATTTG	ref_3351_fdr	9	6	10	8	4	7	8	11	16	9
ATTTTTTCCGTTGCGA	ref_3351_fdr	165	146	193	177	136	172	135	138	151	159
TGTAATCTCCTGTTCA	ref_3351_fdr	84	50	107	98	57	93	64	80	50	69
GCTTAGTGGTTATTCT	ref_3351_fdr	16	14	15	12	17	7	14	19	17	10
TCCAATGGTTCCCGAG	ref_3351_fdr	31	13	20	18	12	9	14	19	15	14
ACACTTTGTCTAAAAG	ref_3351_fdr	100	68	122	88	76	80	94	92	72	74
CACACGTAGAATAACG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CATAGCCCATTCGTCC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCTTTGTAATCGG	ref_3351_fdr	27	30	34	41	32	26	25	27	27	18
GAATAACCCCTTATCG	ref_3351_fdr	4	5	5	5	0	4	6	5	3	2
GTGTTTGGTCCTTTCT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CGAGCCTTACGTATCG	ref_3351_fdr	14	14	16	13	8	12	13	17	11	8
AGCCTTCTGCAGGGGC	ref_3351_fdr	11	25	11	11	17	10	24	9	17	17
TCTATGGCTTCCTACG	ref_3351_fdr	377	300	448	370	265	366	303	316	286	284
TCCATCCCTAAGGAGG	ref_3351_fdr	30	27	24	25	23	28	29	30	23	11
TTTTACTTGGTAACGT	ref_3351_fdr	57	39	66	69	61	46	53	54	39	48
AATTTAATACACACGA	ref_3351_fdr	9	11	11	13	16	18	12	8	10	8
TGGAGGCATTCGCGAT	ref_3351_fdr	18	10	19	14	19	14	11	14	15	23
CGACCCATCCGGGGAT	ref_3351_fdr	18	8	15	12	8	12	11	12	8	13
ATTCTACGATAGCCGT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
ATACTATGTCTGGGGT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TATTAGGGAGAGCGTC	ref_3351_fdr	80	81	109	78	86	94	88	76	110	78
CACGCTTTAGCAGTGG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAAATTTTCCTGA	ref_3351_fdr	130	112	139	134	113	108	135	128	127	101
TTATTGCACTAATCTA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTACCTCGCCCAG	ref_3351_fdr	26	19	25	24	24	23	31	25	23	19
AGGAGGTTGTGGAGTG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGATGATTATGCT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TCAAATCGGTTACAGC	ref_3351_fdr	9	13	18	10	11	12	16	9	12	10
GCGCGTTCTCACCTTA	ref_3351_fdr	13	28	28	27	33	26	18	22	25	8
ACTGATTAAGGTGCTC	ref_3351_fdr	9	11	18	16	13	6	15	11	11	8
ATCAAGGGCTGAATAC	ref_3351_fdr	4	7	3	0	2	1	2	1	6	1
TGCCATAACTTTCATT	ref_3351_fdr	20	17	27	26	27	33	23	31	28	27
CCGGTCAAACTCTCAC	ref_3351_fdr	0	22	5	6	18	2	10	3	15	1
GTGAAGGCGAGAAAAC	ref_3351_fdr	35	28	27	25	17	27	26	23	39	23
ATCTGGTATCCACACT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CACACCCCGTCAGACG	ref_3351_fdr	3	51	2	2	35	4	49	5	51	1
AGCTCTCTTTGCATCA	ref_3351_fdr	16	4	17	19	17	10	13	12	9	12
TGGTGTTTGACTTGTT	ref_3351_fdr	22	23	22	29	14	17	19	19	26	25
AAATTATGCCGGGGGT	ref_3351_fdr	2	3	7	6	3	2	5	7	7	9
CCGGCCTGCATGCAAA	ref_3351_fdr	29	31	31	33	22	34	37	23	27	26
ATGGTGTATAATAGCC	ref_3351_fdr	38	29	25	41	21	40	42	40	34	34
TCATTACAGCTGTGCG	ref_3351_fdr	49	47	59	56	43	42	74	69	74	50
GATTGAAACGTCCCTT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCGGCGTTGACAG	ref_3351_fdr	61	84	78	83	74	66	93	75	63	63
ATCCCGAATATTATTG	ref_3351_fdr	18	19	29	32	12	19	10	15	30	21
CTATCGATACTACTTG	ref_3351_fdr	14	13	21	23	17	16	8	14	11	10
ACCATCCTCCCCAATT	ref_3351_fdr	16	20	27	9	20	18	31	15	20	15
TCCCGATCCATTCTGG	ref_3351_fdr	10	14	16	11	17	17	17	9	19	7
TTCAGTCGGCGGAACT	ref_3351_fdr	28	15	14	14	22	21	18	15	12	15
TGCCTAGTGTAAAACC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCCACATTTAATT	ref_3351_fdr	53	47	53	44	30	45	45	45	57	49
CTTTTGCACAAACACT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
ATGTAACGGTGAGCTC	ref_3351_fdr	9	7	5	5	9	10	12	13	11	18
TTTTGGTGCCTGTCTC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCCGCGTCAATT	ref_3351_fdr	20	23	18	23	8	12	10	18	14	9
TAGCATGTTCGACTTT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTTTATGTGGTCGTGT	ref_3351_fdr	38	25	38	27	27	32	30	39	26	42
CAAAGATTCTGCCCGG	ref_3351_fdr	14	9	20	14	10	13	8	6	23	5
GCTAACCCGCAAGCGT	ref_3351_fdr	148	183	182	169	215	141	197	178	196	147
TAATCGTGCTTCTGAG	ref_3351_fdr	48	57	69	40	59	42	55	53	56	55
ACCCATACGCCGAGCT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTTGCCTCAAAAG	ref_3351_fdr	3	1	5	6	2	4	2	2	5	2
ATCACTGCCAATTTAT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CTGATGCCCTCCCTTT	ref_3351_fdr	85	48	63	51	43	64	43	63	41	60
TCGGGGGCTTTCGTCA	ref_3351_fdr	5	10	9	9	8	10	14	8	9	8
CACTTCTGTTGGTATG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGGAGTTTGCTGGCTC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTATTTTAAAACA	ref_3351_fdr	182	155	244	211	196	205	197	163	186	182
ACAATGCGGATTGGAA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCCCGGATGGGCT	ref_3351_fdr	21	14	18	18	10	15	12	12	14	15
GCGCTTTATAGCAGAT	ref_3351_fdr	25	32	36	44	23	27	27	23	32	37
TGTGCGCAGTTTAGCG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTAAATTGCAACCGCC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGCGCCCTATCTC	ref_3351_fdr	26	12	24	17	22	13	17	12	14	26
CAATGGCGAGTACGTT	ref_3351_fdr	103	70	127	92	109	114	96	102	93	83
TTTCTTTCACGACGGT	ref_3351_fdr	98	70	81	56	53	78	70	54	67	64
CTGCTAACGGTTTAAT	ref_3351_fdr	218	152	199	200	174	169	163	175	167	138
TTGTTACCCTGGACGA	ref_3351_fdr	53	37	57	59	34	54	40	38	40	42
GTATTGGGAGCCGTAC	ref_3351_fdr	14	16	27	27	21	21	29	28	25	21
CGTTTACGCCGCGAGA	ref_3351_fdr	67	46	87	59	52	66	41	40	41	63
TGGATTTGTTTCAGAA	ref_3351_fdr	4	7	10	5	6	4	3	13	8	13
ATCGGCCCACTTTGTG	ref_3351_fdr	16	14	11	11	9	6	3	14	6	10
ACTCGCAAGCGCTGCA	ref_3351_fdr	34	12	35	16	19	32	29	27	19	18
CTCTGACTACGTGCCA	ref_3351_fdr	160	152	174	155	161	170	156	128	189	151
GGACATGAATTCGTCG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
ACAATGGTATTGTACC	ref_3351_fdr	3	8	4	6	3	1	8	2	3	6
GTATAATAGTCATGGT	ref_3351_fdr	16	9	20	17	15	7	14	13	8	9
AGAGTCCGGGTTATGG	ref_3351_fdr	71	48	90	83	71	71	58	85	81	56
TGCCAGTAGTCTAGAG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
AGACCCCCGATGTATT	ref_3351_fdr	28	12	35	32	22	21	30	26	14	28
GCTGAATACCTAATGG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
AGCAATAACAGTTGAC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CGGGTTTGCGCCTTTC	ref_3351_fdr	14	23	9	13	27	15	43	13	40	17
TTATCAACCGTCTGAC	ref_3351_fdr	46	50	36	46	47	33	37	53	48	33
ACACGGCCTTTCTTAG	ref_3351_fdr	9	9	10	12	5	8	9	3	6	4
ATATTATCTCAATACG	ref_3351_fdr	11	17	8	15	14	19	21	19	18	11
CCCGTGGTGTCGAGGG	ref_3351_fdr	117	97	150	145	145	129	98	111	149	89
CATACGTCCTATATGT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
ATCAACCCCATTGGGA	ref_3351_fdr	42	36	69	49	44	45	39	51	45	41
CGGACATATGGTAAAA	ref_3351_fdr	11	18	26	14	11	17	16	14	17	9
ACAAGAGCTCCCTTTC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTTCCGTATTGTA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCTAGGTGGCTTT	ref_3351_fdr	267	217	289	291	245	283	228	273	258	241
TTTGCTCTTTTCGTAA	ref_3351_fdr	61	42	65	54	45	59	52	48	46	43
ACGTTATGTCGTCTCC	ref_3351_fdr	99	68	107	109	79	116	90	105	91	89
TTATAGTTCAGTAAAT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGCAAGGGCCCAG	ref_3351_fdr	9	2	3	1	0	4	1	3	2	0
ACTTTTGCGTTTAATG	ref_3351_fdr	36	20	35	20	27	31	26	22	35	29
ATGTAGTATTTGGAGA	ref_3351_fdr	21	17	48	32	16	32	39	39	31	28
GTCGCTTCCGCGCTAA	ref_3351_fdr	8	8	9	1	2	7	6	5	12	1
GGCACTTTTCTCTGGC	ref_3351_fdr	42	36	52	56	23	32	32	53	39	33
TCTTCTTCCTAACGCA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TGTAATGACCTTAGGT	ref_3351_fdr	3	10	3	9	5	12	8	7	2	9
TGACTCTTGCGGTAAT	ref_3351_fdr	22	16	26	25	19	16	27	23	19	26
ACTGTAAAGGAAGCTG	ref_3351_fdr	2	3	3	2	3	1	2	0	2	2
CTTTGCTCGCACTCTA	ref_3351_fdr	22	17	25	17	21	17	18	24	24	17
ATGGTTGGGGTTTAGA	ref_3351_fdr	18	17	18	15	12	17	9	12	7	16
CATAGTATTCGAGTTG	ref_3351_fdr	32	21	26	15	23	21	28	13	19	23
TAGGTTTTCTTGCGCT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCAATTTACAGTGTTA	ref_3351_fdr	426	382	535	477	391	450	467	413	468	401
CAGAAGTCAGCCTGCT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CTATGGACATACCTAC	ref_3351_fdr	9	11	11	7	9	1	14	4	15	6
AGACATAGGCTGTTTT	ref_3351_fdr	103	59	110	111	82	97	64	91	101	106
CCAGGTGTAGCGTCGG	ref_3351_fdr	10	3	8	10	1	2	11	7	8	9
TTGACTCACAATGTTG	ref_3351_fdr	163	132	239	199	135	189	150	176	152	144
GCCTGTTAGGGTAAAG	ref_3351_fdr	6	13	13	6	22	9	17	8	13	7
GCGGGCCCCGGTAGTT	ref_3351_fdr	54	71	77	63	36	83	46	66	53	56
TCGTGCTTGGCTTCTC	ref_3351_fdr	5	9	6	17	9	14	11	8	12	5
AATAGACTCTCATTGG	ref_3351_fdr	22	19	24	27	27	15	22	19	20	18
CAAAATGTTACGCGAT	ref_3351_fdr	42	37	38	41	43	42	43	33	39	41
TGCGCATATAGGCCTA	ref_3351_fdr	7	3	8	3	3	8	5	2	8	1
GTATGGGCATTTGTTT	ref_3351_fdr	153	85	156	145	131	112	108	102	115	119
CCTTATGTGTAATTGT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGCGCATTTGCTC	ref_3351_fdr	12	14	21	11	19	19	21	16	15	11
TGATGCAAGTCCGGAG	ref_3351_fdr	54	40	66	59	59	75	47	67	57	62
CGTGGATTCCAAACCA	ref_3351_fdr	33	25	35	24	18	19	23	27	17	22
TCCTGAATGCTATGAG	ref_3351_fdr	365	271	429	374	329	293	315	343	307	287
GAGTAAGTGGTTTACC	ref_3351_fdr	24	11	26	23	27	15	24	23	22	24
GTATCTTACGCTGTCT	ref_3351_fdr	0	1	5	3	0	1	2	0	2	1
TAATCTCTGTCCTATT	ref_3351_fdr	10	9	13	12	7	8	7	10	13	4
TATATTGCGTCGAAGT	ref_3351_fdr	169	134	196	164	152	153	146	125	149	132
TGGCCGATCGTGGCCT	ref_3351_fdr	27	25	22	33	28	21	28	32	31	23
GGCTCAGAGCTCTGGC	ref_3351_fdr	2	5	3	2	5	4	3	1	3	0
TACTGTTGATTGAGTG	ref_3351_fdr	18	24	29	32	15	26	30	28	21	16
TAAATTGCAGGCAGGG	ref_3351_fdr	42	25	40	36	27	35	28	46	38	36
TCGACTATCGTCTTCC	ref_3351_fdr	51	40	75	64	38	60	52	62	52	52
TCTTTCCTGAATTTTA	ref_3351_fdr	3	4	6	2	9	2	3	9	4	1
GTCCAGTAATGTGTTC	ref_3351_fdr	135	97	146	159	132	127	96	108	117	128
ACCGCCTACATTAGTT	ref_3351_fdr	13	4	11	6	8	2	5	6	11	9
ATTGAGAGTACCTGGA	ref_3351_fdr	58	60	68	65	61	71	69	59	61	53
GTAATCCAGGTCCTAG	ref_3351_fdr	60	63	81	78	67	67	64	75	46	63
TATGGCTACCGGTTAT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCCATAATACTAAATC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
AAATAGATATTTCCGA	ref_3351_fdr	42	44	47	57	26	45	43	34	29	35
GTTTGACTTTCGAAGT	ref_3351_fdr	12	23	22	15	17	15	14	13	6	18
TGAGGCGCTTTCTCTT	ref_3351_fdr	10	17	19	8	12	18	10	17	11	17
GAATAGTGTAGATTCA	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
CGCACTTCAAAAGGTT	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTCACACACTCGG	ref_3351_fdr	34	35	33	31	30	26	41	42	47	17
CACGGGAGAATGCTGT	ref_3351_fdr	10	21	11	8	5	20	9	8	5	16
TTTTTGCGGTGTGTGG	ref_3351_fdr	8	10	8	5	8	8	4	8	9	6
ATAGGCATGTGCTCAC	ref_3351_fdr	10	15	7	6	4	7	6	7	8	10
TTTAGTGTGTGCCTTT	ref_3351_fdr	24	23	50	26	20	32	33	42	32	23
CGTGTATGATGGGTAC	ref_3351_fdr	39	48	80	52	56	53	49	48	45	44
CCCGTTGTGTTACTTT	ref_3351_fdr	5	4	8	4	6	4	5	1	5	6
ATTCTACGCACTCCGT	ref_3351_fdr	45	51	48	36	44	45	49	41	54	29
GCGGCGTATTATCGCG	ref_3351_fdr	32	30	43	30	28	40	32	36	28	40
CACGTTGGCGGAGAGC	ref_3351_fdr	4	1	3	3	2	2	7	4	0	4
CTCCGATTGTTAGGGT	ref_3351_fdr	41	38	49	40	31	37	38	39	37	26
TCTGTTAGCCCCAAGG	ref_3351_fdr	87	64	105	94	76	70	82	84	63	82
CCGCTCTTCGTGATTC	ref_3351_fdr	17	14	18	20	12	11	11	14	6	12
GTTTATTCATCCTAAC	ref_3351_fdr	14	23	27	13	12	11	18	16	16	14
AGTGTATATTTGCGCG	ref_3351_fdr	8	15	16	14	16	14	14	13	15	7
ATTCAGAAATGTTGAA	ref_3351_fdr	32	24	25	26	23	28	24	28	15	25
TGGTTGGTATTCTTTG	ref_3351_fdr	25	22	25	30	16	23	20	17	20	24
AATGTTGGTGTATTCG	ref_3351_fdr	13	19	13	13	16	28	19	6	24	18
CTAGCAGTATACTCCA	ref_3351_fdr	22	22	18	15	23	16	29	26	23	21
GCGGTAGCATGAGAAC	ref_3351_fdr	36	33	39	23	49	34	28	41	45	34
AGACACCCGACTGTGT	ref_3351_fdr	102	97	112	110	101	86	73	106	93	89
TTGGGACCTATATTTG	ref_3351_fdr	61	49	72	72	60	74	62	64	58	64
ACAGGAAAAAACTATC	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAGTCTGCGTGGT	ref_3351_fdr	50	39	39	38	31	45	33	42	36	36
TATCTTTTTACCCTCT	ref_3351_fdr	4	7	9	7	3	5	3	8	4	10
CTCGTAACAGCGTCGA	ref_3351_fdr	25	19	32	36	20	26	34	42	27	23
TTTCCTTGGGACTTTG	ref_3351_fdr	91	69	117	100	82	90	103	76	70	74
TACCTCTTTTGAAGAG	ref_3351_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGTCTATCCTGTT	ref_3351_fdr	41	44	79	65	52	50	53	44	81	50
TTGATTTCCTCCTCCG	ref_3351_fdr	43	38	44	43	33	45	51	50	33	44
TCCGCGCATGGATAAG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TGGACGGACGAGTGTT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TAGCTTGCTCGTGTGG	ref_2501_missing	7	7	10	9	5	10	11	9	9	8
TGCCTCCAAATATTCT	ref_2501_missing	0	1	2	2	0	1	3	0	1	1
AGGATCTGCGTTCCCG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TGTGTAGGCACTGGCA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TTCTCCTCCTGCTAAG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CACCCGTCACCGCCCG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
AACGTTTGTCGCCCCA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CAAGGTCTATTGATCA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TATTATTCGGGAACCC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ATGAACATTCTCTAAA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TATAGTTTTTGCAGTC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CGTTCTAATTTTTGTC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ACTTCACTCACTCTCG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GCCCTGAATGCCAGTC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ATATAGGCCCGGATTG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TTTTTGGCTCCGCTAG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GCACTCGGCAACCTTC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ATTGGGTCCTACCCAG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ACGGTGTTTTTACCTT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
AATCTACCGTTCTTGT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CCTAGTATATTAGGTG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TGGTGGTATGTCGATC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GCGAGCTTGATCTCAC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CACTAAGCCGTCGATT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TCAATGAGCAAGGGCC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GCCTAATCTCGCATTG	ref_2501_missing	14	5	9	10	7	4	4	9	2	9
TACGGGAGCGTGCATA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ATTTCTGAGCATGCGC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TCGGCCCCCTATGTTA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GGACGTGCCGGAGTCA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TGAACCGGATATGTGC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GATGTACACCCCGGGG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CTTACGGTGCGCCTCT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CGGTTGTTTTGCTGTC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TGTTCGGATTCGCATA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TCCTTGTGCCGCTAAA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CATCCCCTTTCACCGC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TTTTTGAGGCCTTGGT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GCTTAAGTTCGGTATG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
AGGACCAATCGCGCTT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GTTTCACGCGGTAGAA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
TCTGCAATTTTTCTAT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
AGTAGATTTTATTAAA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
GGGAAAGGGATATGGC	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
AGACAGGGGTGATGGG	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CGTAGTCTTGCACAGA	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
ACTCCGTAACCCGTCT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CAGCTATGTTCATCAT	ref_2501_missing	0	0	0	0	0	0	0	0	0	0
CATGGCACCAACTAGC	ref_2501_missing	44	26	69	52	30	52	34	58	24	41
CGTGCATTACACTTAG	alt_3974_missing	0	0	0	0	0	0	0	0	0	0
GCGCCGTGGGGTTAAT	alt_3974_missing	140	128	191	165	133	157	139	170	162	115
CGTTTGTGACAGCTCA	alt_3974_missing	15	16	28	17	14	15	22	14	11	7
TGTTTTCTATGGCTCA	alt_3974_missing	38	39	47	55	58	54	41	31	43	46
TCTTTTCATTTTTTCG	alt_3974_missing	21	17	32	24	9	23	15	16	16	22
TAGGCCATGAGTTCTC	alt_3974_missing	10	9	17	14	6	12	13	8	10	5
TATGGATCATGGGGCA	alt_3974_missing	0	0	0	0	0	0	0	0	0	0
TGCGTTGTAATCGTGT	alt_3974_missing	8	19	15	11	11	9	12	7	7	10
TGGGTGCATGTGTCTT	alt_3974_missing	0	0	0	0	0	0	0	0	0	0
TACCGAGACTGTTTGT	alt_3974_missing	2	3	4	1	4	3	1	4	0	2
TTTAAGAGAGGTTGCC	alt_3974_missing	109	94	134	133	91	123	131	122	106	99
TAAGTGAGTGCCTCTA	alt_3974_missing	134	157	205	153	106	157	146	126	152	143
AGTGGTACTGTGTGCC	alt_3974_missing	25	24	39	32	31	31	17	33	22	30
GTGAAATTTAGGTTAG	alt_3974_missing	44	31	48	35	24	34	19	34	30	17
TGGTAACGAGAAACGA	alt_3974_missing	0	0	0	0	0	0	0	0	0	0
TTCTGAATGGAAACAC	alt_3974_missing	42	36	79	38	35	41	55	23	44	34
GCGACACCCCTCTCAC	alt_3974_missing	3	17	5	4	18	1	18	0	18	2
TGCCCGTCGTCTATGT	alt_3974_missing	48	47	47	51	68	41	51	45	75	49
GTCCAGATAACTACCT	alt_3974_missing	3	2	1	6	2	2	4	6	1	6
CGGGTAAATTTTGGTC	alt_3974_missing	24	12	25	21	10	32	18	20	18	28
TCACCGTTTTTTTGGT	alt_3974_missing	69	36	35	49	46	45	47	39	48	35
AAATTAGAGCGCGTTC	alt_3974_missing	39	37	67	52	35	49	42	58	42	60
CTGTATCAGGTTATTC	alt_3974_missing	44	28	42	34	37	36	30	31	29	29
GAGTGCAACGGGTGTG	alt_3974_missing	34	34	38	27	22	28	21	28	36	28
CATTATATTACGGCCC	alt_3974_missing	13	15	13	22	10	11	9	13	13	10
GACGTCATCGTATATT	alt_3117_fdr	66	16	79	52	16	58	20	63	17	40
CTTTCCCTCGCAGCGC	alt_3117_fdr	27	108	57	68	91	64	94	52	100	47
GGTTGTAAATTTCTGT	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
ATTTACGGTAGGCATC	alt_3117_fdr	103	45	151	143	50	137	42	115	33	104
TCCCAGAGATAATTGC	alt_3117_fdr	101	32	116	108	35	102	23	102	43	91
ATTGATAACACGTGGG	alt_3117_fdr	352	118	443	445	123	350	133	345	128	334
ACATCACCGGCACCCC	alt_3117_fdr	135	54	159	160	34	153	64	125	44	116
ATATTTGGTACTCTTA	alt_3117_fdr	9	1	9	9	1	13	6	6	3	11
ATATCCGCAGGTGCGG	alt_3117_fdr	91	20	109	112	39	82	28	88	35	104
CACCGTAAGTAGCCAC	alt_3117_fdr	54	20	56	77	31	52	33	53	28	37
TATCGCGTTTGTCATT	alt_3117_fdr	1	0	0	0	0	0	0	0	0	0
TACATTTGCTGTCTGT	alt_3117_fdr	83	27	124	116	38	82	24	72	34	76
TCGTTTTTTCTAGGAT	alt_3117_fdr	266	110	346	318	122	297	111	286	104	257
TACTTCAACAGTAGTT	alt_3117_fdr	46	12	51	43	24	51	24	44	12	33
CCTCCGGTAAGGTCAC	alt_3117_fdr	56	23	75	71	13	52	21	53	16	53
ACCTCACTCCAGTTCC	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTTGCTATAGTT	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCACTCGATGTCC	alt_3117_fdr	111	40	169	117	33	121	42	105	38	106
GCCTGAGTATCCGCTG	alt_3117_fdr	118	28	148	131	28	105	41	123	44	104
CTGATCAGACCTCTCT	alt_3117_fdr	65	24	79	76	15	66	18	91	18	65
TAGCGCGTTTGTCATT	alt_3117_fdr	166	47	199	185	46	173	54	182	53	157
GGTCCGGGCTACTTTA	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCTGCCCTCCGCT	alt_3117_fdr	94	26	97	96	16	85	17	60	13	62
TCAGACCTTACACGCT	alt_3117_fdr	295	85	373	337	60	281	101	318	82	268
CCCCGCAGAACGACTA	alt_3117_fdr	122	60	156	121	41	120	48	113	57	92
GTCGCTCATAGTTTCA	alt_3117_fdr	22	7	31	25	6	27	14	24	7	14
GGTTGCGATTGAAGGT	alt_3117_fdr	22	3	25	23	6	23	4	8	3	14
GGTTTCATGCCGGGGG	alt_3117_fdr	21	4	28	30	5	20	11	17	6	19
AATTCCCAAGACTCTT	alt_3117_fdr	168	48	184	161	47	133	38	143	50	140
GTTCTGCGGCACAAAT	alt_3117_fdr	71	18	85	70	14	58	15	56	28	61
TGTAGCGTGATCCACT	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCTAATAGCTGAG	alt_3117_fdr	176	66	195	158	57	145	43	137	60	154
TGGTCATCCTGTGGCG	alt_3117_fdr	310	94	390	315	106	276	80	275	98	241
ACAGATTTTGCCAAGG	alt_3117_fdr	168	44	197	185	44	185	52	178	61	147
ACTAACATTGGCTGCC	alt_3117_fdr	159	48	152	175	33	147	38	137	43	112
CGCGGGCCTCTGTCAA	alt_3117_fdr	20	11	11	21	10	19	8	12	8	23
TTGCTGGCGTCTCCCT	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
GGAATAATTTGAGAAG	alt_3117_fdr	37	10	46	33	15	44	12	42	8	31
CATCCGTGGGGATGGA	alt_3117_fdr	144	48	195	196	41	158	40	147	51	138
CAAAGCGTATACGTAA	alt_3117_fdr	8	2	11	9	2	12	1	10	2	6
TTTCGTTGCCACAACA	alt_3117_fdr	5	5	4	2	0	7	2	8	1	5
TTCGGGTGGGTGTACG	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
TATCAACCAGTCCTTT	ref_3117_fdr	7	1	7	5	0	4	1	5	3	2
GTAACTATCAACATGG	alt_3117_fdr	273	64	298	326	69	234	65	255	62	235
GGTTTACCGGGGTCAG	alt_3117_fdr	167	68	188	155	57	133	69	161	68	143
AGTCCGGTAAATCCAT	alt_3117_fdr	108	22	106	123	32	81	42	91	38	76
TCGTTTAATAACTGTC	ref_3117_fdr	471	137	538	493	123	419	116	460	114	347
GAGATTGATAATATTT	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
CGTACAGGAACTTTGA	alt_3117_fdr	23	12	29	16	8	17	10	19	6	23
AGCACGGCCAAGGTTT	alt_3117_fdr	41	4	41	19	4	37	2	28	6	27
GGGTGAAAAGCTGTTG	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
TATACGATTGTGTGGA	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
CAACTATACGGGAACT	alt_3117_fdr	106	23	92	95	21	93	34	72	21	68
CTTATTGCACGTACCG	alt_3117_fdr	217	62	309	229	69	249	92	247	69	230
ATGCTAATCCGTAGAT	alt_3117_fdr	78	18	84	77	25	57	20	58	22	65
GCTCAGTCTTGGTCTT	alt_3117_fdr	54	12	49	44	17	36	14	59	19	46
TGACTTTGCGCTTAGG	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
GAACTCGCGTTATGAA	alt_3117_fdr	767	198	816	809	235	681	227	689	255	601
GGGTGGTGGACGTATC	alt_3117_fdr	88	18	97	90	21	94	23	75	31	74
GCATCACTTGCGATCG	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
ACGTCTCCTTATAGTC	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTGCTCCGGGTTT	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
CGATTGATTATTGATA	alt_3117_fdr	301	82	312	296	103	270	78	282	96	238
GCTCACAGTCTTCTTT	alt_3117_fdr	273	99	280	276	98	239	99	278	100	214
AAATCTGACGATGTTA	alt_3117_fdr	0	0	0	0	0	0	0	0	0	0
TGTGAAGTGCTAGGTT	alt_3117_fdr	60	38	83	57	35	57	40	48	34	41
ATTATCTGTCAATGAA	alt_3117_fdr	62	16	90	77	21	49	19	79	23	51
CATCCCAGCCCTATCT	alt_3117_fdr	228	85	335	280	78	246	83	272	78	197
CTGGCACCTATCGCCC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
ACGCAGACATGTCACT	ref_2205_fdr	39	26	45	56	42	36	28	47	32	33
GAGTTCTGCTCTTGAC	ref_2205_fdr	304	204	362	320	181	292	185	266	200	260
CTATCGACCTTCAGAG	ref_2205_fdr	28	19	47	44	17	35	20	42	21	28
CCTATTGTCATTGTAA	ref_2205_fdr	60	50	72	65	37	65	60	68	51	54
GAACTTTGAAGCGTTG	ref_2205_fdr	222	156	253	221	120	197	168	190	130	191
AGCTACCAATTGTCGC	ref_2205_fdr	15	7	25	22	10	15	14	18	15	7
TCACCGGCGGGCAACT	ref_2205_fdr	2	16	6	9	21	6	13	12	12	12
TGGCCACGGGTCTTGC	ref_2205_fdr	20	24	41	29	18	30	19	30	22	32
CTACACTGCCGGATAA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTCAGGGAAGCTC	ref_2205_fdr	275	153	346	303	186	268	179	275	187	264
CTTGCCTGCTATAGTG	ref_2205_fdr	75	67	110	92	87	86	100	100	87	88
ATGATTGGGAAGTAAG	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CATCGCTGCTTATTAT	ref_2205_fdr	34	26	58	37	24	30	11	39	25	34
CAGATCCTAAATTCGT	ref_2205_fdr	393	250	492	439	269	367	231	347	259	326
TACTTTCGAGGGGGCC	ref_2205_fdr	136	82	147	141	74	121	66	110	60	111
TGGCGGTCCTCCGGGG	ref_2205_fdr	38	20	45	40	15	39	26	33	15	35
ACGATTAGTTTTTCCT	ref_2205_fdr	25	17	28	29	16	36	24	19	23	24
CTGGTAGAAATATTTC	ref_2205_fdr	105	47	99	75	37	81	49	74	48	62
TCGATTCATGAGCATA	ref_2205_fdr	18	13	20	19	14	16	10	13	19	10
GTCTCCTTGTGACTTC	ref_2205_fdr	6	8	16	12	10	6	5	9	10	5
CTTCACGGATGTGTAT	ref_2205_fdr	208	126	257	235	143	174	159	174	139	184
GATCTCGGGGGGCCTA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TGTAAGGTACTGAGCG	ref_2205_fdr	20	11	35	19	11	18	11	25	13	17
GGTTTTTGCGTAACGT	ref_2205_fdr	80	66	90	73	65	75	55	68	49	70
AACACTAGGAGATTTT	ref_2205_fdr	54	27	65	45	23	43	32	51	31	46
GGCACCCACATTGGAA	ref_2205_fdr	26	12	18	23	13	21	20	20	15	21
GCGCTCACCTCTGTCT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCTATGGACCTTT	ref_2205_fdr	61	51	86	74	38	61	36	46	50	58
CGTCACGAAGGCTTTC	ref_2205_fdr	32	20	60	51	24	35	25	43	24	36
AAGGGAAATCGCGTGG	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTACCGTGGTCAC	ref_2205_fdr	2	13	7	6	13	9	13	5	8	5
GGCCCTTTGCATGCTT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TAATGGCTGGTACTTT	ref_2205_fdr	32	17	35	37	22	28	22	34	20	29
TATTATACATTTCTTG	ref_2205_fdr	32	22	34	27	20	43	9	28	21	32
TTTACGGGTGACAGTC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGCCCCATTACTG	ref_2205_fdr	7	6	11	15	13	4	6	9	5	6
AAATTCCAGGTCCTGC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TATGTCTAACAGCATT	ref_2205_fdr	12	14	19	17	12	16	12	17	14	10
CCTTAAGTATCTTTTT	ref_2205_fdr	27	18	33	19	17	37	19	24	32	26
ACCTTATTGGATTCAG	ref_2205_fdr	230	165	282	235	170	252	181	206	172	240
CCGCATTTGTGTAGCG	ref_2205_fdr	83	95	95	68	79	92	72	66	71	63
GTGTTTTTGCAGTCTT	ref_2205_fdr	57	24	79	65	38	61	49	75	40	53
CGAGTCCACATAGGAT	ref_2205_fdr	20	14	15	11	13	15	5	9	7	12
TGCGGCTCGCCACATG	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAGTGTCTGTGTG	ref_2205_fdr	57	37	73	44	37	40	46	42	60	57
TCGAACTGTGAGGGAA	ref_2205_fdr	65	48	116	70	56	81	62	84	42	58
TCTGTTCGGTTCGTAA	ref_2205_fdr	172	122	271	194	118	199	113	148	137	153
ATACCCCTCGCCATGT	ref_2205_fdr	28	15	24	34	21	14	13	34	19	31
TATCGTCTCATACCCG	ref_2205_fdr	9	1	6	1	2	6	0	4	0	3
ACGAATGGAGTTATTG	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGCTCGGCTGAGT	ref_2205_fdr	31	23	54	46	22	50	36	39	22	38
ACCACGTTGCGGGGTA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGAACCGTGGAG	ref_2205_fdr	346	192	406	359	234	324	227	308	228	346
GGAACCTTCCTGGGCC	ref_2205_fdr	13	14	12	12	7	10	7	9	14	8
TAAGGGTCCTTATACT	ref_2205_fdr	66	53	65	67	38	63	43	72	39	41
TCGTCCGCTTGTCTTT	ref_2205_fdr	64	84	115	96	59	86	80	80	88	77
TCAGTTTCTCATCGAA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
GGTTACTCTCTGCATT	ref_2205_fdr	47	17	43	62	34	44	23	40	34	48
CATTACTTCCCGTCAT	ref_2205_fdr	2	7	4	0	7	3	5	5	7	5
CCGCCCTCGCAATCGT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
ACCAAGTCCGCCAAAT	ref_2205_fdr	9	12	10	7	6	8	5	8	9	1
CTCGTATAGACTCTAC	ref_2205_fdr	66	48	76	84	41	84	45	48	45	78
TGCCTGCTTTGGCAAA	ref_2205_fdr	108	63	142	135	81	106	61	105	74	106
ACGTTCGCCGGTGATT	ref_2205_fdr	121	93	166	159	77	146	64	154	81	95
ATTTAGCCCGTAATTC	ref_2205_fdr	100	52	121	106	65	78	52	97	68	65
TCGTAGGTGATATCAG	ref_2205_fdr	26	19	20	12	15	12	13	14	7	21
TCCAGGATCAGGTTGA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TCGGATGTGTAGCTTC	ref_2205_fdr	25	11	24	23	10	28	14	16	12	14
GGCGTCGGGCGATTCC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGCTCACTTATGT	ref_2205_fdr	103	69	133	107	77	101	74	108	71	83
TGCTCACACCTGATAT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTCCTATGGGCCT	ref_2205_fdr	0	3	0	1	2	4	1	2	0	1
GCAGTTCGCGTTTATG	ref_2205_fdr	28	18	46	32	26	29	21	25	21	27
CTTTTCTGTGATTTTG	ref_2205_fdr	111	55	127	101	70	108	66	80	58	97
CCTACTCCTGTTTACC	ref_2205_fdr	12	48	21	17	69	16	56	13	54	11
TTGAGGTCATACCGCT	ref_2205_fdr	34	29	45	39	22	50	35	28	29	34
TTCGTTAAGTTATCCG	ref_2205_fdr	148	115	188	139	83	145	123	85	115	91
TTGATTCTGTCGTTCC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
GGGAATCACAGGAGAC	ref_2205_fdr	83	71	124	91	61	111	45	107	65	95
CAGCATAGCGTATCCG	ref_2205_fdr	13	10	16	18	12	8	7	20	13	20
TTTACCTTGCAGACGG	ref_2205_fdr	918	490	1162	927	577	840	577	870	643	752
CTGTTTACACAATTTT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTTATCCGTCATG	ref_2205_fdr	48	24	67	36	18	55	25	52	30	46
ACAATTTGCAGATCAG	ref_2205_fdr	126	80	148	110	73	102	80	109	92	86
CATTCAGCGAATACGA	ref_2205_fdr	172	95	233	219	121	173	115	187	112	148
TGACTGGACCATTAGG	ref_2205_fdr	12	11	26	17	15	19	12	20	10	22
TTCCGGGAAATTTATT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
GACTAAGCTGATCCCG	ref_2205_fdr	9	4	11	14	4	9	10	9	6	8
TCGATATGCTTGTGCC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
GAATTGTCTGTGCTTC	ref_2205_fdr	63	67	83	105	58	78	44	83	56	69
TCAGCTAGTCGTCGCG	ref_2205_fdr	35	32	36	41	24	26	39	32	18	28
AACCCGACAAGTCATA	ref_2205_fdr	18	2	14	13	6	18	14	7	4	14
TAAGGTAGGTAGCGCA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
AATGTGACAATGATCT	ref_2205_fdr	108	59	83	102	52	86	56	74	58	100
GTTGGCCAATATATAT	ref_2205_fdr	89	57	97	73	56	69	44	89	46	47
GCTTTCACTTTTTTCG	ref_2205_fdr	77	53	77	91	55	76	45	74	44	54
GTGCACAGGCGTTCAT	ref_2205_fdr	13	14	29	27	10	15	20	19	17	23
AGTCTGAAGTGGATTC	ref_2205_fdr	185	135	203	207	106	180	133	158	124	166
TCGAGTATTCACTTTT	ref_2205_fdr	63	50	99	82	57	80	40	69	56	80
TTCGTCAGATCCGTCT	ref_2205_fdr	10	10	23	14	9	19	5	18	9	13
CCCCAGTCCCGGGAGC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGCGCGTATTGGG	ref_2205_fdr	21	12	19	19	9	18	8	14	12	19
GTTTCCCATGCTGTGT	ref_2205_fdr	11	8	12	7	5	7	5	4	9	2
AGGGGGTTAGCGGAGG	ref_2205_fdr	48	27	81	55	39	49	43	56	42	43
GGTCACCTCTGGGAAT	ref_2205_fdr	10	4	14	24	15	8	12	17	2	10
GGGGTAAAAGAACTAC	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CCGACCTCGCAATCGT	ref_2205_fdr	161	104	214	175	116	139	125	136	119	156
AACCCTCCACTTGTGC	ref_2205_fdr	11	59	21	23	71	10	64	16	88	12
ACCCGTAAAAGAGCCA	ref_2205_fdr	13	4	18	9	4	5	1	14	7	12
ATTAGTAGTCCTTGTG	ref_2205_fdr	55	33	74	54	49	58	57	82	30	71
TTTACATTCCACGTGA	ref_2205_fdr	17	7	14	6	3	5	12	12	4	7
CAGGACACCTCTCCCG	ref_2205_fdr	136	142	131	123	156	116	149	99	156	107
GGTAAGCTTCCCTATT	ref_2205_fdr	116	49	109	92	69	81	72	88	72	81
TGCCGTGGTCTACATA	ref_2205_fdr	44	32	39	36	28	48	30	39	45	29
GTCCTTTGCGCATATC	ref_2205_fdr	88	55	102	100	60	82	47	75	70	82
AATTGTAACCTTTGGC	ref_2205_fdr	26	24	37	37	17	40	14	30	19	28
GGTATAGGTATACGGA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGTTGATTTCACT	ref_2205_fdr	367	170	370	328	217	319	200	272	199	277
ACTCGGCACGCTATTT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGGGTTTTATCTA	ref_2205_fdr	11	4	10	9	13	8	7	6	9	8
GGGAAGGGAAGCGCTA	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCATCCAGCAATC	ref_2205_fdr	45	37	64	71	25	39	44	64	31	53
CTTTCGATATACGCCC	ref_2205_fdr	0	1	0	0	0	2	0	1	0	1
ATATTTGTTCGTCACT	ref_2205_fdr	26	12	34	29	12	22	16	34	21	27
GGTTCTACAAGATGAT	ref_2205_fdr	19	16	22	17	14	18	12	11	23	14
ATTCTCTTTAGTGGGT	ref_2205_fdr	51	33	71	63	34	43	28	51	29	47
TCAATGTCTCGTTAAT	ref_2205_fdr	22	10	31	30	8	19	19	21	16	23
CTAGCCTGCAACCATT	ref_2205_fdr	4	5	7	6	2	3	3	4	5	6
TTATTCGATCATCCAT	ref_2205_fdr	40	24	40	63	34	36	26	41	29	39
TCTACTAATTTCAAAC	ref_2205_fdr	85	50	139	102	55	100	71	97	59	81
ATTTCTTGAATCCTAC	ref_2205_fdr	9	2	8	5	7	9	6	5	6	6
CCCACTGAAAATGAAG	ref_2205_fdr	17	21	32	37	20	35	32	29	22	25
GTTTCCATAAATCTCT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTCAAGGCAATCG	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCACATGCACCTG	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGCGCCCGCTACG	ref_2205_fdr	75	61	94	87	63	58	80	85	82	63
CGCTTTGTAGTGTTTT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CTCGATAGCAACGACT	ref_2205_fdr	237	141	295	251	155	240	174	243	149	233
TTTCGGGTGGATTCCG	ref_2205_fdr	61	23	86	59	23	41	38	46	38	47
TAGGGTCATGTGCTCC	ref_2205_fdr	56	37	76	47	41	52	43	49	35	46
ATGAGCAAGCCTTTAT	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
AGTATCACATCGCCCC	ref_2205_fdr	6	33	14	5	24	8	34	11	17	7
CGAGCTATGTTGACGG	ref_2205_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGCTGCTCTTTGG	ref_2205_fdr	54	41	72	79	30	60	51	60	49	51
CACTCGTACCGTGGTA	ref_2205_fdr	26	23	16	24	12	18	19	15	15	20
TAGACACCCATCCATT	ref_2205_fdr	15	23	20	13	10	16	15	13	23	9
CAGTTTTTTTCTCTCC	ref_2205_fdr	113	53	158	123	82	113	58	109	63	120
ATCAAGTCAATTGTCT	ref_2205_fdr	208	137	277	233	167	201	165	208	146	217
CGCTGGATCGCTAAAA	ref_2205_fdr	7	7	7	6	0	5	2	9	7	9
TAAGGCGGAACGTACA	ref_2205_fdr	11	6	12	15	6	9	7	17	7	12
CGGTCATGTTATGTTT	ref_2205_fdr	60	33	60	45	35	43	35	47	36	45
AATCCGCTGGACTGTC	ref_2205_fdr	59	63	71	57	32	35	35	60	42	40
TAAAACACGTCACCAG	alt_3673_reverse	94	111	98	84	135	88	107	95	128	89
CATCTTGCCCTCAAGC	alt_3673_reverse	21	32	18	15	15	15	28	9	19	18
GTCTCACGTAAGGTAC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTCCCATAACGGC	alt_3673_reverse	10	4	8	9	8	4	13	4	7	2
TATGTCGGCATGTTGG	alt_3673_reverse	7	6	3	3	4	4	14	6	8	5
GACTTGTTTAATATAT	alt_3673_reverse	36	41	46	36	54	32	59	30	42	36
TGTTGCTGCTGCTTTT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCCCAGCGACAGCTCC	alt_3673_reverse	2	3	1	2	4	1	3	3	9	4
AAAAGGTATCTCCATA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
AATTATGGTTTTGTGT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGCGACTCTCATT	alt_3673_reverse	17	21	17	21	26	5	18	18	23	18
GGTGAGCGCGACTCAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATACCTACATATCAAG	alt_3673_reverse	79	110	88	79	117	74	107	86	128	71
AACCCGCATTTCACGA	alt_3673_reverse	72	74	73	79	59	64	87	71	80	51
GAGTTTAGCATGCCGT	alt_3673_reverse	49	54	44	37	62	42	64	42	62	38
CAACTTCATCACTATC	alt_3673_reverse	7	25	11	10	12	15	24	14	9	9
GCCGTACCAATCAGAT	alt_3673_reverse	0	10	2	2	4	4	1	1	9	6
TACTCTTTTCTTGTTC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTCGATGTTTGCT	alt_3673_reverse	39	105	62	60	93	37	73	66	91	48
CCGCGCAATAGGTTGC	alt_3673_reverse	36	64	38	57	45	25	78	33	75	34
AGCACTCATCGACTCC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
AAGTGAACCGATCGAA	alt_3673_reverse	18	33	32	23	31	20	27	22	36	10
CGGAAAGATATATCCG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGCTAGCCTGATA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGTTAAGTGAGAC	alt_3673_reverse	10	8	12	13	22	7	13	6	9	8
TTTCTATGGCCGTAAC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTTATGATTCCATTAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGAAATACGCATG	alt_3673_reverse	13	15	11	13	24	12	11	15	19	14
CCTCGGCTCGTTTATG	alt_3673_reverse	19	52	33	16	65	16	48	17	60	22
CTCTGCTACAACATTT	alt_3673_reverse	31	47	32	27	27	26	33	24	42	32
GCGCGTCTTTTTGTGG	alt_3673_reverse	3	3	5	1	5	6	6	4	3	1
TCGCATTCTGGGATTC	alt_3673_reverse	25	45	34	32	33	24	55	28	53	22
TAGTCTTAATATTCAA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCCCGTGTGTTAA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGTATGATGAGTCCGA	alt_3673_reverse	31	26	30	25	42	29	42	31	38	23
TACTCGGACCATTCCA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATTAACGCATATAACC	alt_3673_reverse	42	53	46	37	66	36	57	26	66	28
TTAACTTTGGTAAGGG	alt_3673_reverse	25	30	29	18	45	21	29	24	37	18
ATGCGTCTATCCCGGG	alt_3673_reverse	7	7	9	6	7	2	8	12	7	1
GGTTGCGCTGCCTCAC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ACGATTTTTTTTGACT	alt_3673_reverse	54	48	59	37	75	45	68	49	64	51
TTAGGAGTGCATCCTT	alt_3673_reverse	11	44	19	20	29	25	25	9	27	17
TTTCTACCTGGTCAGA	alt_3673_reverse	30	27	34	36	46	16	23	24	44	25
GAACACACACTGTTCT	alt_3673_reverse	36	61	53	45	65	45	74	39	69	42
GCGAGACTATCAGTTT	alt_3673_reverse	9	15	8	13	10	9	15	5	10	11
ACTCGGACTGGCTGTA	alt_3673_reverse	8	7	7	5	2	4	11	5	9	11
TAAAACTGGCGAGCGT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGTAGTTTGAGTA	alt_3673_reverse	21	49	30	25	44	30	40	19	39	18
TAGTTTTGCGGCGGGG	alt_3673_reverse	57	91	65	47	81	52	79	60	97	63
CCAGATTTTCGGTGGT	alt_3673_reverse	19	24	27	22	17	16	39	32	28	14
TCGTGTTATCAACTTG	alt_3673_reverse	15	32	33	16	25	23	22	21	30	10
ATTCGGTCCCTTCATT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCGTAGGGTTAATGTG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTACGTGTGGTTT	alt_3673_reverse	9	27	20	20	29	12	35	10	30	16
ATCGGAACAGACGGGT	alt_3673_reverse	18	14	22	9	19	14	18	7	26	16
GGCGGGCTATCAACTT	alt_3673_reverse	41	62	41	37	48	33	39	39	66	28
AATTCTCAAAGGGTCT	alt_3673_reverse	33	48	44	48	46	35	53	37	62	47
TTCGTTTTTAAGTCTG	alt_3673_reverse	9	14	16	6	7	4	10	3	14	7
TCTTTTGAGAAGCTCC	alt_3673_reverse	9	5	4	2	4	4	5	5	5	6
TCACCAGAAGGGTTTC	alt_3673_reverse	11	19	18	7	24	9	25	12	20	10
TCTTGATACCTCGTAT	alt_3673_reverse	17	36	25	24	29	15	38	18	37	15
GTCTATTCTTTGTCTT	alt_3673_reverse	44	68	58	45	71	34	55	36	51	36
TCAACTGGTGCACAGA	alt_3673_reverse	22	43	32	27	49	12	40	28	36	21
CATGCCCACTGCGAAA	alt_3673_reverse	8	19	6	4	16	7	25	8	21	4
GCCTTATACTGCCATC	alt_3673_reverse	6	11	5	10	8	6	3	4	12	1
TTGTTCTCTACGTGTG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGCCTGAACATTC	alt_3673_reverse	6	10	3	12	7	10	13	8	9	6
TGCAGTCTCATCCTTA	alt_3673_reverse	25	50	43	41	51	35	50	22	54	46
CGTTATTCGTGGAGGG	alt_3673_reverse	18	19	17	20	26	25	25	19	23	16
CAATACCTTGGTCTAA	alt_3673_reverse	13	18	20	8	38	12	30	9	25	7
CTGCAATGTTCCGCAC	alt_3673_reverse	21	37	24	32	29	22	38	27	39	24
CAATACCTTAGTCTAA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGACGGAATCACC	alt_3673_reverse	45	91	73	59	95	51	93	57	94	48
AATCGGGAGAGAAAAG	alt_3673_reverse	61	64	73	59	68	52	79	42	72	42
TTCGTCTAATTTTATA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GCAACTAAAGTATGAA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGTCGAGTTTATA	alt_3673_reverse	39	130	55	47	134	40	135	46	133	41
GCCGAGTTGATGAGAA	alt_3673_reverse	17	15	18	20	23	11	16	9	27	12
GGGGCCCCTTCTCCGC	alt_3673_reverse	1	1	0	2	1	2	4	3	1	1
ACGAGCCCCGGCTCGT	alt_3673_reverse	6	10	8	2	8	3	10	8	8	7
ATCTTCTTCATTTGCC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTCGACACGTCCA	alt_3673_reverse	18	59	17	20	56	16	62	12	52	12
TACTGCTCAAAGGTGA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCTGTCAATTGCA	alt_3673_reverse	80	120	83	66	116	63	135	52	97	55
GAGACGCAAGGCAAGT	alt_3673_reverse	12	17	15	13	16	9	9	14	23	13
GAATTATGACTACTCT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCTCATGTGAATG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTCGAATCGCAAT	alt_3673_reverse	30	35	26	24	35	19	36	14	53	21
TGTTGCGGAGAGATTG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CAGAATCCCGTACGTC	alt_3673_reverse	18	14	17	14	31	16	25	21	31	7
CTATTTCTATTTTGCG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GATGTCGTTCTTTCTG	alt_3673_reverse	56	62	63	55	85	60	60	34	89	50
GGAGATTCCTACGCGA	alt_3673_reverse	5	6	6	3	5	2	6	3	7	0
ATGACAATGGGGCGAT	alt_3673_reverse	16	21	23	17	18	14	22	15	19	15
GGCAGATAGGTGGCAG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ACGCTGTACTTCCCAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTGGACACTGTAGCTC	alt_3673_reverse	1	4	1	1	3	2	4	2	4	4
TCGTGATGGGGAAGTA	alt_3673_reverse	6	13	10	7	10	13	13	7	10	11
ATTCTATTACAGCATG	alt_3673_reverse	55	79	71	63	75	55	86	55	107	64
CTCGATCAATGCTCGG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGCTGCGTAGTTGAGG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGCACTTGCAAGGATC	alt_3673_reverse	28	74	49	37	73	33	58	33	60	32
GGCGTATTTCGCCAGC	alt_3673_reverse	66	86	82	71	104	62	110	62	100	74
TCTTAGATGTACCAGC	alt_3673_reverse	23	35	25	21	37	23	41	24	41	6
CCAAGCAAAATATTGT	alt_3673_reverse	4	15	4	11	14	8	9	15	13	7
TTGCTCGATGACAGCC	alt_3673_reverse	17	23	23	9	20	17	16	16	19	9
GCGTTCCAAATTGGGC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATTAAAGGAGGCGGCC	alt_3673_reverse	123	163	145	95	135	110	161	102	165	101
TCTCGTCCGACGTCCA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TCGGCGTTTAGCTTCG	alt_3673_reverse	26	36	34	28	41	38	47	28	52	23
TATGCATGTGTCGTAC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGTATGTGGTTTA	alt_3673_reverse	42	112	54	36	94	56	84	60	90	41
AGATTCTAATGCATCC	alt_3673_reverse	7	5	8	13	11	12	9	3	10	5
GCCCTCTGTAGGATTG	alt_3673_reverse	17	23	12	13	18	11	13	16	18	13
GCTTTATGTCTTACCG	alt_3673_reverse	78	130	77	54	126	62	121	58	143	51
GTAAGTTCTTCGCAAA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGCATCAATCTTTTCA	alt_3673_reverse	25	23	29	28	24	18	27	18	50	24
CGACGATGTCGGGGTG	alt_3673_reverse	16	24	16	15	22	14	17	4	9	15
GTACGTATACCTTTGT	alt_3673_reverse	35	41	33	33	45	25	52	30	37	29
TACCATGGGTGCGATA	alt_3673_reverse	1	4	6	4	5	3	15	4	5	4
TAATGTTTGATTGATG	alt_3673_reverse	318	405	392	310	456	291	475	278	495	265
AGGTTCTTATTATTTG	alt_3673_reverse	14	14	20	15	3	13	13	10	29	7
GAACTACCGTCTGCTC	alt_3673_reverse	10	6	18	14	6	17	13	7	11	7
CGTGCATTTCACATGT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTGCGATATTCT	alt_3673_reverse	108	145	147	132	211	122	205	114	161	88
CGAGTACCATATTACG	alt_3673_reverse	48	72	64	60	104	39	90	50	120	53
CTTGCTAACACCCAGG	alt_3673_reverse	1	2	2	4	3	5	3	1	5	2
TTGAGAGTCCACACTG	alt_3673_reverse	47	97	74	66	70	40	84	52	93	47
TCTCCCCATAGTGTCT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TACACTCGTACAATAT	alt_3673_reverse	25	33	32	27	35	17	32	34	42	25
TTCTGACAAGGCATTT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CGACTCCCCGCAGATG	alt_3673_reverse	0	4	0	1	13	0	5	0	2	0
CTAGATTGATGGTAGA	alt_3673_reverse	0	3	2	0	2	0	3	0	0	1
TGTGGTAAATCTCGAC	alt_3673_reverse	7	12	14	17	12	12	6	4	16	9
CCATTAACTGTCTCAA	alt_3673_reverse	2	7	7	8	10	3	14	8	11	5
CTGGTCCGCTCAAGCC	alt_3673_reverse	0	8	6	2	11	6	7	2	2	2
TCGGGGCACCTCTTTT	alt_3673_reverse	11	13	10	14	21	14	18	6	19	10
CGTGCTGCAGTCGCCC	alt_3673_reverse	10	18	5	9	17	6	6	10	15	8
CCTTCGGCGTTCATGT	alt_3673_reverse	6	21	7	16	23	5	20	7	24	9
TCTGCCACAGTCTGCA	alt_3673_reverse	105	176	141	116	147	115	177	106	161	113
AGGGTCCAGCGACGTC	alt_3673_reverse	51	53	57	51	67	38	61	44	58	46
CAACTTACCTATCTTA	alt_3673_reverse	4	5	1	0	3	0	1	1	2	0
CGTACAATAATCATTC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TGATCGGCTTGCTATG	alt_3673_reverse	34	37	26	23	34	25	24	16	25	19
CTACCCCAGCAATTTG	alt_3673_reverse	14	35	18	12	37	17	31	14	27	9
GCGGATAAAGGGTGAA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAGTTATTCGCAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GGGTAGCGCCGCCCCT	alt_3673_reverse	6	8	10	8	8	7	21	5	12	3
CTTCCGGAGGTGCGTC	alt_3673_reverse	8	8	15	17	13	4	20	4	9	7
TTTCTTCGGCAATTTT	alt_3673_reverse	40	46	52	29	52	47	60	24	59	25
GTGCCTCACCTGACGA	alt_3673_reverse	40	63	39	39	72	34	44	47	72	37
GGTAACTTGGGAACGC	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGAATAACGCTAT	alt_3673_reverse	26	20	18	21	17	17	25	9	24	16
GTATTGAAATGGGATG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCGTTATTTTATG	alt_3673_reverse	7	22	32	19	30	9	32	17	23	18
TCTTTATAGCGAATGA	alt_3673_reverse	10	15	16	8	11	13	16	6	12	14
AGAAATGGATGTTAGG	alt_3673_reverse	18	22	26	16	25	18	21	17	22	18
GTTTATGTTTGCGGTT	alt_3673_reverse	8	19	16	21	18	9	14	14	18	13
TATGTAGACGGCGTAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGTTAATTACTC	alt_3673_reverse	5	21	14	18	21	19	22	11	18	24
CACAGTAAACGTCTTA	alt_3673_reverse	15	20	12	13	19	5	20	12	15	14
CCCCTGGCGAACTTCA	alt_3673_reverse	20	43	28	29	45	23	37	18	45	22
CACAAGTGAAACAACT	alt_3673_reverse	6	11	5	4	11	4	10	2	15	12
ACAGATGAGCTTAATA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
ATACTGTGAACAAAGC	alt_3673_reverse	7	4	2	7	10	2	8	9	9	7
GCACGGGTGGTGGTAC	alt_3673_reverse	27	45	29	21	34	34	48	30	41	19
GCCACCTGATCTATAC	alt_3673_reverse	26	49	43	39	51	30	47	26	49	31
GATATTTTGGAGTTCA	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCGTATCTCAGTG	alt_3673_reverse	17	20	23	25	25	24	26	23	29	16
TTTTTGACAGTGCGGT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
AAATGCACGGCTCGTG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTACTAGTCCGAA	alt_3673_reverse	41	64	59	34	74	42	74	35	50	47
TTGCAAGGGATGTTCG	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGTATCTATTGG	alt_3673_reverse	6	18	20	11	15	16	23	11	29	6
CCATTCTGTTCACAGG	alt_3673_reverse	28	44	52	42	66	28	59	37	44	40
ATACACTGGGTACTAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGCTTCTGTACGG	alt_3673_reverse	16	19	10	10	16	12	28	6	23	11
TATGCGTTCGGGTCAG	alt_3673_reverse	26	43	35	30	57	44	57	32	45	33
CGTTTATTCCCCGGAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTTCTATGTTAAT	alt_3673_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCTCCACTTCGAG	alt_5632_new	7	20	10	14	12	17	20	7	14	14
AGGGGGACCTATGCTT	alt_5632_new	4	4	9	1	3	0	3	5	7	1
GGCTGGCATCCTCTGT	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TTTAGTCAGGGTAAAA	alt_5632_new	51	55	73	47	63	42	76	31	70	35
CTGGCAAGTCGCCCAG	alt_5632_new	11	7	14	4	13	5	10	7	18	10
CGAACGGACGCCCATC	alt_5632_new	0	0	0	0	0	0	0	0	0	0
ATGGGAAAGTTCACGG	alt_5632_new	146	177	198	181	191	171	198	153	213	146
AAGACTTTGCGAATTT	alt_5632_new	4	7	6	6	7	6	8	5	12	5
ATTAAACTCGATTTTG	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TGTAAACCGACTGTTT	alt_5632_new	0	0	0	0	0	0	0	0	0	0
GGGTTCACCTCTTAGT	alt_5632_new	48	81	65	55	66	40	88	40	91	43
CGTATCCGCGGCTCGT	alt_5632_new	68	76	93	94	105	64	95	78	119	78
GGGCGCACTCGACAAT	alt_5632_new	19	20	25	11	28	24	22	16	28	11
TGGTTGTTTAGTACGT	alt_5632_new	2	3	5	0	3	0	2	1	4	0
GTCTTACTGTCCTAAG	alt_5632_new	8	11	11	5	15	4	8	11	12	6
TGTTCCGCACTCTCTG	alt_5632_new	5	8	3	5	3	3	9	7	6	3
GCGTCTGGATCGCGGT	alt_5632_new	19	35	27	22	29	17	32	20	52	18
AAACAGGCGTCGTGCA	alt_5632_new	26	29	20	19	36	11	38	11	26	18
ATTTATGCATCCTGGT	alt_5632_new	34	38	44	44	54	35	55	22	65	31
TCCTGTGCTCCCTTGC	alt_5632_new	0	4	2	1	3	0	2	1	2	0
GCGCCAATGGAAAGCC	alt_5632_new	24	37	26	23	43	25	29	29	41	29
ATCGCGATTCGTGATG	alt_5632_new	67	151	110	91	142	78	150	101	151	75
AACACTACAAGTTTTC	alt_5632_new	15	31	25	12	25	21	33	16	23	20
AACCGAAACAATCGAG	alt_5632_new	34	37	37	36	56	27	33	27	46	35
GTGAGAGTAGCGCGGG	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TGAGCTTGCTACCTGG	alt_5632_new	0	0	0	0	0	0	0	0	0	0
ATGATTAGTATATAAC	alt_5632_new	3	18	8	3	19	10	10	2	16	5
TGTCTAGTCCTGCTGT	alt_5632_new	25	45	24	25	50	30	49	27	48	22
CAGCCGGCAGGTCTAT	alt_5632_new	0	1	1	1	8	0	1	0	5	3
GGCTCGTGCTGATGGG	alt_5632_new	46	62	55	54	58	51	72	36	68	39
CAGTTAAATAAGGCGT	alt_5632_new	0	0	0	0	0	0	0	0	0	0
CTGCGTTGTTACTGAC	alt_5632_new	0	0	0	0	0	0	0	0	0	0
GTTGCTACGGGCAGAA	alt_5632_new	0	0	0	0	0	0	0	0	0	0
GTCCGCCTCTGAACTC	alt_5632_new	7	15	30	8	24	15	17	12	24	22
GTCTTGTTGCGAAATC	alt_5632_new	41	57	34	37	48	29	67	36	63	33
GTGCGGACTTGGTTAT	alt_5632_new	30	47	20	30	67	25	48	29	52	25
CTTTTGCTGAAGTTAG	alt_5632_new	30	40	32	29	60	36	55	36	65	35
GACATCATTAATTGTT	alt_5632_new	14	11	12	6	20	8	20	18	19	6
AACCTTTGGAATCCTC	alt_5632_new	11	14	19	13	15	10	16	11	17	6
GCCTAGCACGTAATGT	alt_5632_new	0	0	0	0	0	0	0	0	0	0
CATTGGTAGAAACTCG	alt_5632_new	40	57	34	37	67	58	57	42	75	38
CGGGATTGCTGCACTC	alt_5632_new	0	0	0	0	0	0	0	0	0	0
CTGTCTGAAACGTTGT	ref_5632_new	86	121	130	100	167	92	159	79	145	64
TGCCAGGCGAACGCTT	alt_5632_new	11	16	13	8	18	10	17	8	20	5
GGGTATCCAAGTCGCA	alt_5632_new	0	0	0	0	0	0	0	0	0	0
CGCAATGCCGTCAGTT	alt_5632_new	17	18	17	25	20	11	33	13	33	14
CTTTATCGAGCTCCTT	alt_5632_new	57	70	45	47	81	49	69	42	76	36
TTCAGCAGGGTATGGG	alt_5632_new	1	0	0	0	1	1	1	1	2	0
GTCCGATGGCAGTGCA	alt_5632_new	7	9	10	4	14	6	9	6	20	6
TCTTTGATTCTTCTCC	alt_5632_new	24	21	25	22	27	19	19	17	31	12
TGGCCTACATGAAATT	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TAATTTGCCCGGCAAC	alt_5632_new	7	9	9	1	15	2	9	6	7	3
TGAACATTGCTAGGTA	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTTGAGTTCTC	alt_5632_new	6	4	5	7	13	4	13	5	2	6
GACTTGCCGGTGTACG	alt_5632_new	20	18	23	16	26	15	23	15	29	15
CATCGGCGGCTCACAA	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TCTTACGCCTTGAGGG	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TGTGCTACACCTGTTT	alt_5632_new	17	34	16	18	37	11	53	21	53	29
TGCTCGGTTTAACGTC	alt_5632_new	0	0	0	0	0	0	0	0	0	0
TATATACCGTCTGTTT	alt_5632_new	30	38	35	16	35	17	44	19	45	11
TTACCTCTCAGGATTC	alt_5632_new	38	50	33	49	60	30	71	44	72	54
GATAATCTCCTGAGAT	ref_3303_fdr	107	67	123	98	77	98	79	104	96	94
CGTGTCATAAGGCCTC	ref_3303_fdr	22	16	40	23	18	19	7	15	11	15
GTTAGTCAGCACTGTG	ref_3303_fdr	64	70	96	87	88	99	73	92	74	79
GTGCACTGATAATGAA	ref_3303_fdr	104	72	125	101	82	127	62	78	75	67
CGTGGTCCGTTTACGG	ref_3303_fdr	37	40	51	51	42	30	40	48	52	35
CCGCTGACATGCATTT	ref_3303_fdr	73	43	66	60	45	66	42	51	38	71
ACGGGACCCCCGCAGT	ref_3303_fdr	58	28	52	49	38	45	31	57	52	46
ATTGTGACAGCGGAGG	ref_3303_fdr	3	1	2	5	2	4	1	3	2	3
TCGCAGTCCCAATTTT	ref_3303_fdr	195	131	214	198	116	139	152	147	143	140
TAGTACCTTCCTCGTC	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
CGTAGTACTGGCTCTT	ref_3303_fdr	60	41	78	76	48	57	49	62	50	47
TGGTTCCGCGTTTTAA	ref_3303_fdr	9	8	6	15	5	5	8	7	11	9
CTCCACTTATTTAAGG	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
GACATGGCCGATGTCT	ref_3303_fdr	90	46	115	106	54	83	53	76	45	84
ATAAAACACCTTGAAA	ref_3303_fdr	90	78	110	85	53	61	63	94	63	87
ATAAGGAAGCCACAGT	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCTCATGTGAAGC	ref_3303_fdr	249	135	265	213	149	209	149	219	142	207
TCTAAACTATCGGTAG	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGAGTAGCACCCT	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCATGCCCGGGCC	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAAGATCGGCGGT	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGAGGCTTTCCGG	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGTCAGGGACTAA	ref_3303_fdr	49	23	66	44	33	41	30	41	42	51
CATACCATTCGTTTCC	ref_3303_fdr	334	215	397	301	229	312	248	320	247	298
GTGTGAGCTTTTAATA	ref_3303_fdr	9	5	10	2	2	0	5	5	5	3
TTTATCTCCGCAGGTT	ref_3303_fdr	7	5	8	5	2	4	5	3	5	2
CGCGATTCTTTCTCAC	ref_3303_fdr	84	55	104	98	45	86	56	70	65	83
TCTTCACCTCTCCAGA	ref_3303_fdr	59	27	52	63	36	47	14	58	43	55
GCCTGACATAGATGCT	ref_3303_fdr	14	5	21	23	11	21	13	18	11	9
TTCCCACTATTTTACC	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGGGACGGTAGGT	ref_3303_fdr	224	111	276	263	150	249	148	227	164	215
ACATAGGGCAATTCAG	ref_3303_fdr	85	52	97	106	49	74	55	63	61	71
CCCGGTATCGTGGCCT	ref_3303_fdr	172	88	180	162	98	156	105	130	110	141
GTGTGCGATTTGTTCT	ref_3303_fdr	21	15	23	31	26	16	13	20	19	22
TCCTTCAGGCGCGCGA	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGCAAGTCATTAC	ref_3303_fdr	81	60	119	103	76	85	65	85	72	96
GGTGCCAAACCGTGTG	ref_3303_fdr	63	36	71	56	40	47	36	54	73	55
CGGTGATATTCCTGGG	ref_3303_fdr	5	4	1	2	3	2	5	6	3	4
TCTTTGAGATGCACCG	ref_3303_fdr	108	72	135	123	43	113	77	84	77	94
GTCCTTTACTTTCATG	ref_3303_fdr	7	4	9	8	5	7	8	8	1	5
ATCCCCGGACCCTTGC	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCCTACAACGGG	ref_3303_fdr	17	13	11	8	23	16	17	12	18	7
GGCAGCTTACTCGCTC	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTCAGTACAATTG	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
TTAATCGCCAGTCCTG	ref_3303_fdr	12	13	17	11	10	20	12	18	6	11
TGGTTAACACACTGTC	ref_3303_fdr	9	12	8	5	15	7	15	9	14	7
TACGGCTCACCTTTGA	ref_3303_fdr	40	34	51	51	40	45	47	51	38	49
GTTTTCTGGAATTTGT	ref_3303_fdr	23	30	35	50	14	29	19	24	37	19
AACTTAATGCGGGGGA	ref_3303_fdr	24	13	28	34	14	39	20	29	18	15
TATTGCTAACGCGCAT	ref_3303_fdr	20	9	21	15	7	5	12	8	11	16
CCTTGTCTTATCGACT	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
GATACGTTTAGTACTT	ref_3303_fdr	13	9	13	9	7	9	6	7	7	13
GTGCGGGTTTAAAGGC	ref_3303_fdr	48	39	79	58	42	51	48	49	37	49
GGATATAACAAAGTTT	ref_3303_fdr	49	54	65	65	38	49	51	46	49	60
AACTCAGTTTTTTCCC	ref_3303_fdr	18	15	20	14	23	11	22	16	33	9
CTTTTGCTCAAGGTTC	ref_3303_fdr	77	36	86	78	36	61	58	59	58	66
CTGTAGGTTCGAGTTG	ref_3303_fdr	56	75	39	47	80	36	77	45	108	40
CGTCGTGGCATTTCGT	ref_3303_fdr	167	158	223	197	160	195	168	188	161	177
TTGCCTGCCGCTTCGC	ref_3303_fdr	97	90	115	109	78	84	86	98	77	100
GGGTCTTAAGAAGCGG	ref_3303_fdr	50	53	94	73	42	63	36	60	39	77
GCCATCGAAGGTGCAG	ref_3303_fdr	72	64	86	113	64	79	60	65	88	82
TGTTCCTCGTGAGTCT	ref_3303_fdr	175	144	209	143	131	137	144	170	144	131
GCACGCGCATAACTCC	ref_3303_fdr	23	48	45	30	67	28	44	29	49	21
CATTGTGTTAGATCTA	ref_3303_fdr	25	29	35	39	28	30	26	40	30	29
TAGAACCGGATAGATG	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTACGTGGATAGG	ref_3303_fdr	34	26	37	28	28	41	27	42	30	37
CGGCTGCTGGCACAGG	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
AGATGGATAATGTGTG	ref_3303_fdr	100	74	113	116	81	106	86	106	93	86
ATCGGTTAATTAGCTT	ref_3303_fdr	53	31	73	34	29	50	35	34	48	37
CAGGCTTCCTACGCGC	ref_3303_fdr	66	57	97	76	44	67	34	62	43	64
CTGCCGGCTGACATCT	ref_3303_fdr	29	17	28	25	15	25	26	28	17	29
GCCAAATACCGGGACT	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCATCTCTACGGG	ref_3303_fdr	5	8	11	4	1	9	6	7	1	12
TACTTTTTACATGCCA	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
CCTAAGCCAGAGTCTC	ref_3303_fdr	14	11	20	8	11	24	17	26	19	20
TTATCGATGTCCGCTT	ref_3303_fdr	4	12	8	12	1	16	12	6	10	11
CTGCTTACCCACTGCT	ref_3303_fdr	27	28	31	20	19	24	19	31	33	18
AATTTCCGCGGCTTAG	ref_3303_fdr	148	81	171	138	122	160	92	136	81	142
ACAGGTTTGCCTGCCG	ref_3303_fdr	122	82	130	104	112	118	91	117	92	99
TGCGCATTGGTAATAT	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTAGCAATAGCGA	ref_3303_fdr	0	0	0	0	0	0	0	0	0	0
GACGTTCCCCTTTCTC	ref_3303_fdr	12	9	12	5	11	5	17	9	14	7
CCGCGGTCACCATGTT	alt_3976_missing	2	0	1	4	0	5	0	3	0	0
ACTTTCGGCCAGGAAT	alt_3976_missing	375	39	494	466	47	358	39	384	45	323
CGAAAGGACCCGATGT	alt_3976_missing	1378	163	1873	1726	150	1382	148	1486	163	1215
GTAATGTGCCTTCTTA	alt_3976_missing	966	88	1276	1152	96	953	96	1049	91	881
TCCATACTTCGGAATC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TACTTCATTCGGCTCA	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TAGTTAGCTTCCGCCC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TATGACGTTGCTGTTC	alt_3976_missing	269	36	324	274	34	272	21	243	24	215
CCGTTTCCATATTGCT	alt_3976_missing	156	26	205	201	10	131	18	175	19	118
CCGCTTGTTGGCCTTT	alt_3976_missing	132	13	169	145	13	123	16	88	8	101
AGTTCGGCCGTCTTTG	alt_3976_missing	250	12	275	258	22	231	25	260	28	217
ATGGTCACGTTTTCCA	alt_3976_missing	999	86	1414	1201	107	1011	89	1001	120	933
CTCCAGGCACGTTGCG	alt_3976_missing	614	79	794	706	81	557	75	681	95	510
GCAGTCTTATTTGATG	alt_3976_missing	1267	136	1580	1373	142	1158	144	1173	135	1018
AATACGTCGAGCGTTG	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
ATTAGTGTGCTAGTAA	alt_3976_missing	87	13	93	106	13	83	9	73	9	72
TTGGTTCCGTAGGCAT	alt_3976_missing	835	83	1066	939	87	774	82	810	85	684
GTGGAACGTGATCCTT	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
CTGCGTGTGCTTTATG	alt_3976_missing	954	97	1134	1011	106	841	115	888	81	777
GCCTCGTTGTCCCTTG	alt_3976_missing	408	32	504	429	34	401	41	375	56	369
GCGGCCCCGTTATTTC	alt_3976_missing	257	33	344	296	21	229	28	250	17	267
CTTTTTCCGTGCTGTC	alt_3976_missing	370	32	434	371	31	327	44	276	32	283
AAATCCCGCTTTCTAA	alt_3976_missing	983	108	1231	1076	111	943	102	1024	95	886
TGGCACCCTGTCTCAA	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TTTATTGCAAGCTCAT	alt_3976_missing	979	111	1336	1047	91	1048	94	781	113	800
GTCTCAAGAACGTTAA	alt_3976_missing	570	59	700	653	54	529	47	578	69	533
GTGGATTTAACACTCA	alt_3976_missing	2474	276	3110	2682	270	2325	255	2488	276	2149
CGGAAGATTAAAGATC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
CCTGGACTGTAGTCCC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCCCCGGGGAGG	alt_3976_missing	41	11	57	58	5	46	12	51	10	55
GGCTCAGTTGCGTTAG	alt_3976_missing	501	59	673	524	60	484	43	527	45	454
GGACTAGGCAAGACAC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TTGAATATTACTTTCA	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
CATGGCCGTAGGAATG	alt_3976_missing	270	29	345	283	19	262	29	272	19	247
TAAGTTCTTTAAATTT	alt_3976_missing	472	55	580	590	50	441	52	500	39	423
GGCATTCTAATTCCCA	alt_3976_missing	1369	154	1774	1545	127	1275	152	1364	158	1187
CCCTTATTGGGTCTAT	alt_3976_missing	230	12	271	246	27	204	22	230	28	180
GCATTCCAGATCTGCT	alt_3976_missing	218	22	286	225	26	182	19	204	24	163
CCCCGAAGCGTCCATG	alt_3976_missing	2844	261	3347	2994	278	2701	317	2543	306	2374
AGACAAGCCTGGTACC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
CGTCCATCTTATGAGG	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
GTCTTCGAGGCACCAG	alt_3976_missing	3414	354	4490	3872	351	3357	332	3515	339	2992
ATCGCGTATTTTCGTA	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
CCCCATACGGTTATAG	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TTTTATTATCTTCGAT	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TGGTATGTGATCCAAC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
CCTTGGGAAATCCGAG	alt_3976_missing	1667	189	2009	1790	186	1509	204	1614	172	1404
CAAGCAAGGAGGTGCT	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TGAACGTTTGAATTTT	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TATAATCGTTATAAAT	alt_3976_missing	638	60	752	666	54	561	50	627	62	529
TAGGATCGGTCCCTAT	alt_3976_missing	236	21	304	234	17	178	36	203	19	204
AGGTTTGCCGCACAAA	alt_3976_missing	1126	134	1467	1290	106	1034	133	987	127	912
CCTACCCGCTGGACCC	alt_3976_missing	64	7	125	127	22	82	11	95	14	78
TTCCGCCCATCCTATA	alt_3976_missing	1011	78	1321	1169	88	940	87	962	114	848
TTGGGACTTTCACCTA	alt_3976_missing	621	62	765	676	48	575	74	593	50	477
GCATTCGGTCCATGGC	alt_3976_missing	139	8	200	202	17	119	13	138	9	114
TCCACTGGTCTTGCGG	alt_3976_missing	570	56	699	649	68	561	53	543	57	486
CGGTTTCACTCGTATT	alt_3976_missing	109	10	98	124	17	90	5	104	9	79
TACTAACATCTTCTCC	alt_3976_missing	2777	258	3299	2967	255	2556	282	2685	240	2341
TAGGTACCCGTTGGCC	alt_3976_missing	0	0	0	0	0	0	0	0	0	0
TGTTGATTTGCGTAGG	alt_3976_missing	680	76	871	696	70	605	89	617	76	513
ACTGCCAGTACCCAGT	alt_3976_missing	1233	215	1669	1540	229	1241	242	1364	284	1153
TGCACATTCCGTCCCA	alt_3976_missing	1372	106	1709	1437	115	1285	140	1274	122	1139
ACGATGATACTACGCC	alt_3976_missing	1406	157	1763	1616	151	1259	169	1395	180	1230
TCGCGGATGTAGCTTT	alt_3976_missing	1039	109	1351	1208	92	1023	123	1079	119	944
TCCCGCAAACTAGGTA	alt_3976_missing	743	148	968	911	163	716	174	822	210	598
ATCCAAAATTAATCTT	alt_3976_missing	743	75	900	822	81	659	61	704	74	672
ATCAAATTTACACGCG	alt_3976_missing	2152	218	2614	2463	222	1890	246	2127	227	1959
GAGTCTCACCCACCCT	alt_3247_upstream	314	54	372	361	59	329	56	300	48	259
AGTGGACTTAGATAAT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGATTCTGATGATTCT	alt_3247_upstream	1516	248	1848	1575	218	1328	228	1399	237	1270
AGCTTCGCCTATTTTT	alt_3247_upstream	199	31	265	215	30	216	30	211	20	209
CAATGGCATATGTCGC	alt_3247_upstream	246	36	316	269	42	247	47	250	40	245
ATCGTAGTTCCCTTTG	alt_3247_upstream	3	4	0	12	6	7	3	4	3	6
ATGTATAAACCTTATG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTATAGAAGTGTGTAA	alt_3247_upstream	11	3	19	13	4	15	2	16	4	9
CCCATAGATATTATGC	alt_3247_upstream	24	7	29	33	2	21	8	19	6	18
CGAAACGTCGCCTGGT	alt_3247_upstream	55	27	48	64	16	45	27	43	20	46
TGATACGTCACGAGTG	alt_3247_upstream	627	83	704	675	100	610	94	611	97	538
ATTCCGGAACGGATTT	alt_3247_upstream	1215	196	1555	1254	233	1188	215	1246	200	1132
GAGAGTAATTCTGAAA	alt_3247_upstream	418	69	474	481	66	426	120	434	66	383
TAGTTGGTAACATTGA	alt_3247_upstream	70	9	71	84	14	86	18	93	15	63
GGGTCCGCGCCTATAG	alt_3247_upstream	183	34	216	199	24	148	27	190	37	164
ACCAAACTCGTTTTAT	alt_3247_upstream	98	8	84	84	15	62	3	83	6	51
CCCCGCCTTAATGTCG	alt_3247_upstream	17	6	43	31	6	17	7	25	12	26
CGCGAGCTTCAGCTCT	alt_3247_upstream	88	13	105	98	15	103	20	102	11	95
GGTTTCTATATTGCGG	alt_3247_upstream	127	26	137	133	20	110	19	100	18	99
GTCTTCGTTGACTAGC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TATTGGATGTTGGGCC	alt_3247_upstream	511	73	621	461	104	439	101	479	78	399
TTGCAAGGCGCTTGTG	alt_3247_upstream	27	4	23	26	2	14	9	23	5	22
AGTTTGTAGGACCGCT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GATGGACGGGATGTAA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTACCCCGGCTTAGCG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GGCACACTGCCATAGC	alt_3247_upstream	21	13	25	21	19	21	18	14	21	15
TATGGGTTCGTTTACT	alt_3247_upstream	124	14	175	153	24	135	25	149	29	130
AGTTCCTCGGTATGGA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCAAACACTCCTT	alt_3247_upstream	112	24	89	78	23	74	21	82	28	93
CGAGGCTGAGAAATCG	alt_3247_upstream	23	1	26	19	3	41	2	28	2	20
TCACACGGAGTCGAAT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGCAAACACTTTC	alt_3247_upstream	517	101	718	637	108	552	111	542	100	483
AGCACTTCGCCTCTTG	alt_3247_upstream	516	101	624	509	95	486	98	484	105	469
ATTAGTAGCCAGCAAT	alt_3247_upstream	232	31	260	232	30	199	36	233	31	193
GTTTCTGGTGGGCATC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTCCAATCGTTCG	alt_3247_upstream	260	44	340	298	36	278	50	238	45	244
AAATGCGCGGCGTGCG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGGCGCCCTAATACGC	alt_3247_upstream	1691	248	2144	1925	228	1627	285	1655	302	1554
AGGACTTCGCGTAGTC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTCGCGGTCCCCA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGATAATTGAGGTCTC	alt_3247_upstream	18	7	40	31	3	23	5	22	6	19
CTAACTTCAAACGCCA	alt_3247_upstream	42	8	48	50	6	47	7	56	8	29
GAGAGTGGAATTTGCA	alt_3247_upstream	138	33	231	192	45	200	24	195	31	172
ATTTTCGGTTAGCCGA	alt_3247_upstream	95	20	119	111	12	97	11	89	13	69
CACATCCCTTATGTGA	alt_3247_upstream	181	33	239	197	42	173	24	187	44	172
CTTTATCTTTGAGCGC	alt_3247_upstream	37	13	51	45	15	47	10	60	6	33
ACTTAGTACTAGCCGT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGTGAATAGTTGTTCA	alt_3247_upstream	458	68	495	484	87	367	79	415	76	347
TGCGCTGGATTCTAGT	alt_3247_upstream	320	47	411	357	63	346	63	321	85	301
ATACTCGTACCTTTAA	alt_3247_upstream	157	33	176	169	26	151	25	188	16	124
ACAGGATCTTATCCTG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACGGCATTGGTTATCC	alt_3247_upstream	149	30	207	188	18	150	44	164	29	174
GAAGGCTCTTCCAGCG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTGCGAGCCTACT	alt_3247_upstream	264	39	328	327	40	268	65	253	59	238
ACAAAACGCACAGACT	alt_3247_upstream	79	10	78	84	12	60	18	70	22	76
GCGATAGGGAGCTGCA	alt_3247_upstream	274	32	367	303	42	246	42	325	46	276
GATCTTGTTGCTTTTG	alt_3247_upstream	88	19	133	96	8	91	15	90	10	88
CAAAACCCTTTGATAT	alt_3247_upstream	355	55	406	358	58	308	64	309	57	303
GTGCGGGTGCTCTAGC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGACCTCGCATGT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CAGTTTTTCCTTACTG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTCTAGCCATGTGCGT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGCAATTGTCCTG	alt_3247_upstream	160	30	188	167	32	182	40	143	23	162
GGGGTAGGACCTCGTT	alt_3247_upstream	182	36	197	183	43	190	32	179	35	148
CTAAGAAAATAGGGTA	alt_3247_upstream	1208	176	1328	1139	157	1061	183	1056	160	965
TTGAGTACGTCGGATT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTAACCTGACTCTACC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGTAAGACCTATT	alt_3247_upstream	70	19	98	94	14	90	30	80	11	76
GGCAACCATTTGGACC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTACTATTCCTAT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGTAAGGAGTAAT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCTCATTTGTGCCTGC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CGCAGTGACAGATAAT	alt_3247_upstream	359	64	443	393	71	306	61	375	68	338
GTGCAAGTGCAGCCAG	alt_3247_upstream	298	58	438	371	64	322	58	335	66	297
GTTGGATGCTGGGCTC	alt_3247_upstream	51	7	60	63	7	49	8	46	7	53
AGGCAAGGGCTCTTCT	alt_3247_upstream	116	16	99	84	14	85	22	93	18	72
TAGTGTTAGGAAGCCG	alt_3247_upstream	223	45	264	274	33	250	43	181	42	240
CCCGCCTGGTTTAAGC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GATTTCGAGCATTATC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACTATTGGTTCTGGCA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACGAAAAAATGTATAC	alt_3247_upstream	129	14	168	151	26	116	23	142	33	118
TATCTAAAGATTAACC	alt_3247_upstream	240	30	263	272	34	228	30	205	25	221
GATTACTATATGCAGA	alt_3247_upstream	190	24	253	223	39	209	46	214	40	172
ATGCATTTAAAGGTCG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTGTGACAACCGT	alt_3247_upstream	229	63	259	271	68	216	50	249	51	194
TCATTACAAGATGATT	alt_3247_upstream	490	104	672	558	84	492	115	547	99	481
GAATCACGCTCCCGGC	alt_3247_upstream	513	75	598	534	92	469	96	515	71	443
ACTGATTTTGTGGCCT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGGCGCCGTAATACGC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGACATAACGCGC	alt_3247_upstream	110	17	146	142	23	121	17	106	34	124
TTCGCTCGGGTGGCTT	alt_3247_upstream	637	99	739	668	103	544	93	601	107	540
TACGAACATCACCATC	alt_3247_upstream	323	51	410	317	54	270	56	316	59	278
CGCCAAGAAGCACGAG	alt_3247_upstream	588	78	682	588	82	529	80	633	90	545
ATCATTCTCTTCTTTC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTTCATGTTTGGCCAA	alt_3247_upstream	0	0	0	0	0	1	0	0	0	0
TCCTCACTAACAGCTA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTGCACAATAATT	alt_3247_upstream	6	2	11	7	2	7	2	7	0	5
TTGACTGGCTGGGCAG	alt_3247_upstream	537	87	662	603	98	593	109	593	124	440
GTCCTTACTTTGTTGC	alt_3247_upstream	513	71	633	504	59	486	94	398	74	419
AGCTGCCGAATATATC	alt_3247_upstream	1	0	0	1	1	0	0	0	0	1
GAGATTTTCAAGAAAG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TGGCATCGGGGTACCG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGAGGGTACGAGA	alt_3247_upstream	281	54	380	350	45	366	52	330	47	291
CTACCCAGTTTCCGCT	alt_3247_upstream	310	50	390	382	53	294	57	297	41	261
AATTTCGCACGCCAGA	alt_3247_upstream	301	52	404	350	45	337	52	319	66	324
CGGATTACGCCCATGA	alt_3247_upstream	208	46	270	226	59	210	41	207	42	172
AAGACAGGCTCGGAGA	alt_3247_upstream	135	19	175	114	15	114	11	111	15	106
TCGGGAGCTACTGATT	alt_3247_upstream	330	42	324	343	42	260	52	326	49	250
TCCGGATATTTTAGAA	alt_3247_upstream	192	26	220	207	23	153	33	190	26	148
GCTGCATCGGCGGCCT	alt_3247_upstream	128	27	179	142	27	137	12	159	22	152
TACGTCTTCTGATGGT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGCGGTTTTAATT	alt_3247_upstream	199	27	202	221	36	160	25	194	18	150
TACTACATCCTGCGGG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCACTCAGCGGCC	alt_3247_upstream	247	51	289	287	48	259	58	286	61	223
TATTTATGGTACATTG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGGTATCCTTTAT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTCTGGGTAGCCA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TATTGCGCTGCCATTG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GCGGGTCACCACGTGG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTATACACTACCATCT	alt_3247_upstream	517	95	679	596	111	556	101	513	73	525
CCATCGAGCTCGGTTT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTGAAGGTCGCCT	alt_3247_upstream	103	9	130	94	12	93	9	93	18	89
CGTGCCTAGACTTCCT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCCAGTTCTTTTT	alt_3247_upstream	351	46	384	314	44	310	68	313	75	277
TCTCGTTGCTAATCCT	alt_3247_upstream	164	37	245	171	28	167	27	199	29	160
TGATCGTCAGATTTGA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCTTACATACAAA	alt_3247_upstream	431	62	516	377	63	406	64	381	54	362
GACCAATGCGTCTACT	alt_3247_upstream	732	150	857	795	142	702	157	755	121	652
ACCTTTTGCGCGCCCT	alt_3247_upstream	911	157	1190	1087	172	971	155	959	158	917
CCTGTTTTTGGACTTT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTGTGTACCGGGG	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GCCATAGATTTGTTAT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
AGTACCTGTCGCGGCG	alt_3247_upstream	65	12	75	80	11	48	5	58	9	60
AGTGGCCCTGACGTAT	alt_3247_upstream	654	90	784	737	120	650	118	633	91	636
AAACGATTATCTAATT	alt_3247_upstream	364	52	457	386	48	357	54	341	57	365
CCCTAGGGGGCTTCGA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
TCGGATTAATGTCATT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTCACGCCGAGGG	alt_3247_upstream	726	97	887	736	131	722	108	694	130	663
GGATGTTAGCGAATGC	alt_3247_upstream	176	26	235	204	29	193	32	211	25	164
CTACAGGCCGAAGACA	alt_3247_upstream	261	31	323	278	34	257	42	303	42	226
TTCAACGCACCTTGCC	alt_3247_upstream	284	44	327	261	44	263	53	245	43	218
GAGATGTGTCTTGGGA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CTCATTAATTCACGAC	alt_3247_upstream	104	11	153	118	16	114	23	104	21	113
CCGGACATAAAGCTGT	alt_3247_upstream	12	21	12	13	26	15	36	13	38	9
TCCCATGCGCCGGTTT	alt_3247_upstream	60	7	61	48	7	53	13	51	16	47
ACTTAGTATTTTTTCC	alt_3247_upstream	98	19	118	95	21	93	11	97	12	91
GGGTTCTTGACGGGCT	alt_3247_upstream	8	4	10	9	3	11	3	8	4	9
AACTTACTATCTTGTT	alt_3247_upstream	437	64	526	451	73	381	51	440	82	377
CGTTTGAGTCCCAATT	alt_3247_upstream	364	75	513	420	79	369	67	419	60	381
AATATTACTCGCTGTT	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATTTATTTCGGG	alt_3247_upstream	62	5	61	37	6	57	13	63	24	68
CTTTATGGTCCCCCAA	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
CAGCCAGAGGAATCTC	alt_3247_upstream	180	40	222	203	39	157	54	174	35	171
CGTTTTGAATTGTACC	alt_3247_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGGGGTTGTACGG	alt_3247_upstream	435	60	500	440	81	366	85	385	84	380
CTTCTCCACATGTTTC	alt_3247_upstream	41	17	53	40	7	26	10	33	8	30
ATTCATCTATCACCTG	alt_3247_upstream	1077	190	1431	1260	184	1172	179	1166	200	978
GCCCATATGGTCATGC	alt_3247_upstream	33	10	37	20	6	23	4	24	6	22
ATTGTATCTTTGGGAC	alt_3247_upstream	409	76	496	447	72	377	71	420	78	386
GAATATACTGTTCGTA	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TCTACCCGGCCTGTGT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
GCGTCTATGGGCTCAG	alt_5316_RC	38	29	26	32	25	29	31	37	30	31
CCTTTTTATGCTATGT	alt_5316_RC	41	48	45	33	32	27	43	40	52	26
GCGGCTACGTCTCTCG	alt_5316_RC	18	27	20	15	29	22	30	23	25	13
TGTAAATTTTTTTGCC	alt_5316_RC	31	56	62	43	63	39	52	30	47	40
TGTTGCAGTTATTCAT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
GCCTGTCCATCGTGCA	alt_5316_RC	31	48	52	39	50	27	45	40	66	33
CTATACGATAGGCCGC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGGGCAAGGGAT	alt_5316_RC	21	10	8	9	12	14	18	11	12	5
CCCAGCCTTTGTTAAC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
ACTTAACGAGTTCTAG	alt_5316_RC	8	25	27	8	27	20	21	21	21	17
CGCCTCATGCAGCCTC	alt_5316_RC	1	0	1	2	1	2	0	0	0	0
GGTCCACTGCAAAGTC	alt_5316_RC	30	37	37	31	33	30	34	26	32	27
GGTACTCGGTAACCTT	alt_5316_RC	12	15	8	20	13	8	9	10	8	17
AGTACTCGGTAACCTT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
ATCTGTCTTGCACAAG	alt_5316_RC	33	60	54	52	69	48	69	37	53	54
GTATTGACATTTTAGT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TACGCTGCTCATGAAA	alt_5316_RC	28	29	42	27	36	29	42	36	44	28
CATTCGTAAAGATTCT	alt_5316_RC	21	29	23	23	32	14	30	27	23	17
TTTATTCCCGGGATGG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
GGCTGTATCTATTGGG	alt_5316_RC	1	2	0	1	5	2	0	0	1	1
CGATGTCTCTGCATTG	alt_5316_RC	96	142	104	86	148	98	134	87	128	76
ACGCACCGTCCGTCTA	alt_5316_RC	109	135	106	76	137	99	143	85	164	85
ACCTAATACATCAACA	alt_5316_RC	146	218	206	175	243	185	262	142	244	166
ATAATCGAGTGCTATT	alt_5316_RC	19	22	28	20	32	16	24	22	30	15
TGTCCTGGCCGCATGC	alt_5316_RC	1	1	5	0	1	2	5	0	3	0
GGATCCCTGCACTCGA	alt_5316_RC	85	93	99	75	95	85	97	68	115	65
GGAATCCAGACTATGC	alt_5316_RC	3	0	5	3	3	0	2	3	1	0
AACTCCCGCGCTCTGT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
GTTTTCCGTGTTAGCT	alt_5316_RC	8	17	7	5	8	8	11	9	6	6
ATGTGCGCTTTTGATT	alt_5316_RC	27	27	26	24	38	30	22	15	23	24
GGCGCTTTATTGAGAA	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
GACGACTTAAGCTTAT	alt_5316_RC	128	127	141	87	114	99	138	93	125	96
GTTAATCGCACCAGCC	alt_5316_RC	25	33	37	30	32	31	37	32	56	30
AAGTTACTTTCAAGGT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TTGCTCTAGAACAGTT	ref_6027_new	0	0	0	0	0	0	0	0	0	0
ACGCCAGCTGCAACCT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TAGTGGCGTAGGATGG	alt_5316_RC	2	4	5	8	5	2	6	1	4	3
ATGGTGTCTTTAATTC	alt_5316_RC	19	25	29	19	20	16	29	25	18	24
ACCGCCTCGGCTTTTT	alt_5316_RC	13	14	17	11	17	14	23	14	16	17
CTGCTCTATCCCAGTT	alt_5316_RC	22	48	37	36	50	22	48	33	45	31
CATCCGCGAATGTTTT	alt_5316_RC	48	80	73	53	85	69	89	63	81	47
ACAGGTTGTCTTCCTC	alt_5316_RC	10	14	8	5	9	6	20	11	18	5
TAAGCTCCATGTGCAC	alt_5316_RC	2	7	7	6	6	1	7	3	8	2
GGGGTTTGCCGAGTCG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CAGTGAGTCTCGTACT	alt_5316_RC	20	31	25	25	30	29	36	30	38	18
TCCATGTCGGCGGTGT	alt_5316_RC	10	13	20	17	9	16	15	9	13	11
CTCTATAGATTTCCAT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TGGTGCGAGATTAAGA	alt_5316_RC	14	27	25	23	21	23	25	29	26	19
TTTGGTCTAGACCTCT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CAAGCGTCTCCTTGTA	alt_5316_RC	38	49	45	33	56	32	57	37	60	47
TCGAGCGACATGATAC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
ATCGTTGTTATCTGCG	alt_5316_RC	24	30	25	19	33	22	29	8	30	26
ACCCTGAAATTACAGG	alt_5316_RC	23	38	29	24	32	26	38	22	25	25
GCCGCGAATACTTTTC	alt_5316_RC	10	12	17	18	12	8	15	14	25	15
ATCATTCTTTGACCGA	alt_5316_RC	6	5	1	5	5	1	6	1	0	0
AGGCCTTATCAGGAGG	alt_5316_RC	45	58	45	43	55	46	63	41	55	31
TGGTAGGGTTGAATTT	alt_5316_RC	99	103	135	104	126	75	143	75	128	99
TTTGCCCAAACTTAAA	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CAGGAAACTTCAATAT	alt_5316_RC	31	34	32	32	34	31	21	18	31	19
GAATACTCTCACCAAT	alt_5316_RC	24	37	22	13	16	21	23	16	22	15
CGAGCATGTTGCCCAA	alt_5316_RC	57	48	66	37	53	44	63	33	57	48
CATTGTGCTTAGTATC	alt_5316_RC	1	1	1	2	2	1	4	3	1	1
AAGCAATCGTAGCAGG	alt_5316_RC	34	18	22	25	20	33	31	34	42	25
GTTTGCTTCGTTAACA	alt_5316_RC	6	8	14	4	12	3	8	6	12	8
AAATACCATACGCCTG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TCCGCCCCGCAATCCG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
AGTCCGTGCGTCGTTC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TGTATCCTCCTACCGC	alt_5316_RC	84	112	71	60	96	55	107	55	104	57
GTACTTCTTCAGTATG	alt_5316_RC	54	57	65	51	77	49	62	58	55	54
TGTGTGTTTGTATTAG	alt_5316_RC	11	15	11	5	15	7	16	11	10	15
GGGTCGGTTGTGCGCG	alt_5316_RC	6	25	15	10	20	11	22	17	18	15
AGCGTCCTCGTCAGAA	alt_5316_RC	4	5	7	9	6	1	6	3	4	7
ATTTGCTCTTTTTTAG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CATGGTGACTCATTTT	alt_5316_RC	36	33	33	37	32	31	28	20	45	41
CAAGACTAGCCGTATT	alt_5316_RC	54	57	72	45	73	41	68	55	74	49
TCTTCACCCGTCCGTT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
ACTAGCGACAAGATAC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TAACGTTTCCGAGTTA	alt_5316_RC	26	31	40	40	30	22	26	14	39	25
TGCATACCGTCTTTAG	alt_5316_RC	34	61	48	35	71	39	71	35	90	33
TACGCAAGTCTCCCTT	alt_5316_RC	42	55	38	36	51	36	51	30	64	26
TACCCAGTACTTTTTA	alt_5316_RC	29	60	37	30	50	25	44	40	50	35
CATCTCCCGTTAATGA	alt_5316_RC	25	40	18	21	42	18	25	13	41	14
TAACCGTGAATCCTGT	alt_5316_RC	89	78	99	83	98	90	90	73	110	83
GATAGAACTTGGCGCT	alt_5316_RC	54	84	77	69	80	84	85	74	62	60
CAAAATTCAGTTGTAT	alt_5316_RC	24	29	28	18	36	31	23	21	32	10
CCTCTATGCCCGTTAT	alt_5316_RC	1	10	2	2	9	8	12	3	10	1
GTGATTTTTTCAGAGT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TGGTACCACCGGGAGC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TTTTATTGAGTTAATT	alt_5316_RC	33	35	32	38	36	18	44	22	39	35
GTTCCGGTTACGGATA	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TAACAACTTTTATTAG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
GCACTTCTGGCTCGTA	alt_5316_RC	7	6	9	4	9	2	12	7	3	4
CTTGTATGTATGAACT	alt_5316_RC	11	39	33	16	28	18	29	15	22	12
TTATAAACTCACTTCA	alt_5316_RC	22	34	23	19	30	19	35	15	19	10
GTCACGACCCCGCGCA	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CGACGGCCCGCTTCCC	alt_5316_RC	28	28	38	26	30	23	28	18	24	15
CCTCTTATGCCGAATT	alt_5316_RC	30	52	39	29	49	28	36	30	53	35
GTCTGCTCTACCTTGA	alt_5316_RC	17	27	26	24	43	19	35	16	43	14
CACGTTGTTATATGAG	alt_5316_RC	90	100	96	73	105	71	105	76	91	49
TTTCTGTAGCATGTTC	alt_5316_RC	41	63	70	46	62	48	82	57	80	41
TCTCATCTCGGTTCGC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TGCGTGTAATCCATAG	alt_5316_RC	25	39	41	41	43	39	28	26	29	36
ACATGCTGGTTTTATC	alt_5316_RC	265	269	307	247	306	265	315	221	335	242
CTTCTGCTTGTCTCTC	alt_5316_RC	6	9	8	2	9	7	5	5	17	9
GACAGTTTAGGTCAGC	alt_5316_RC	2	3	1	9	5	2	4	3	4	3
GAGCACGTAATGGTGA	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TGCTGTGGCCTAACGA	alt_5316_RC	21	35	29	41	36	19	31	28	36	22
AAGTCTGCCCCTGGCC	alt_5316_RC	5	13	10	6	11	11	11	12	15	14
ATCACAAAATGTTCGC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TTTAAAGATTTTGTTT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CCGTGATACCGCCCCG	alt_5316_RC	73	73	103	71	84	80	91	67	88	79
TTCACCCCTACGCTCT	alt_5316_RC	53	57	62	56	71	44	72	46	66	49
ATTTGTCATCCACGGG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
ACGACTTTCCGGCGAC	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
GCATATAGTTTCCCGG	alt_5316_RC	36	34	56	30	43	37	37	38	38	33
TATAAATAGACATGCA	alt_5316_RC	13	12	13	17	22	16	21	15	20	14
GATGCAATAATTTTAT	alt_5316_RC	22	23	39	31	45	58	30	27	32	29
AAAGGCACGTTGGGTT	alt_5316_RC	2	1	1	2	2	0	2	2	2	3
TACGCTGATGCCGGAT	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TGACACGCATTAGTTC	alt_5316_RC	204	268	286	243	297	181	275	226	297	202
TCATACCACGTTCTCT	alt_5316_RC	74	93	74	61	83	67	99	59	85	64
CTTAAGAACTCGCAGC	alt_5316_RC	39	55	64	49	64	47	76	45	73	38
AAAACCCGGAGACACC	alt_5316_RC	79	67	68	43	75	54	69	58	75	41
TTCCATAATGCAGGAG	alt_5316_RC	35	39	50	40	42	38	44	38	40	38
TATTGTGGCATTTACC	alt_5316_RC	36	29	29	11	34	30	30	14	39	24
TCGTGATTTATGTGTG	alt_5316_RC	8	5	6	10	11	7	22	10	11	9
TCTTCGCTTATTGCAG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
CTTATATGGTCTGATT	alt_5316_RC	0	6	0	2	1	0	1	1	1	2
TTATCTCCGTACAGTA	alt_5316_RC	8	15	10	13	12	14	13	11	14	18
GGTCCTGACACGCGAT	alt_5316_RC	20	17	27	25	38	21	28	18	33	23
CTAGCCTGTAACGACG	alt_5316_RC	115	206	168	114	191	102	205	109	213	107
AATCATGTGCGTCTCT	alt_5316_RC	55	87	80	59	83	73	77	51	71	58
AAAGTGACTTGGCAAC	alt_5316_RC	74	74	114	72	100	76	121	73	87	72
TGGGCTCTTGATTTCG	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TCATAGGATCGTCTGA	alt_5316_RC	29	32	37	33	56	27	47	28	56	28
GTTCTGTTGGGGTGGA	alt_5316_RC	4	24	8	14	23	15	21	16	19	9
GCCACTGCTGGTCATT	alt_5316_RC	21	21	20	19	21	19	29	14	21	25
GCGGACGGAGATGGGA	alt_5316_RC	0	0	0	0	0	0	0	0	0	0
TTGCATGTTGTCGTTC	alt_5316_RC	10	8	6	8	11	9	6	4	6	5
GAAAGTTGCGTTTTTT	alt_2272_fdr	43	58	61	42	55	41	57	42	55	45
GTTGCTTGGCTTTTCT	alt_2272_fdr	117	139	114	110	128	99	144	92	163	102
CCCCACTTCATCTGGG	alt_2272_fdr	12	41	22	18	46	14	38	14	53	9
CACCAATCGTTTGCGT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTGATATTTGTAA	alt_2272_fdr	18	24	25	23	21	21	35	20	36	20
AATCTATGTGCTAGAT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCGTGATCAGGT	alt_2272_fdr	28	35	32	34	24	25	34	24	39	28
CATCTGCAGAAGCTGG	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TGCATCATAAACTCAC	alt_2272_fdr	15	23	14	15	20	10	24	14	27	8
TTTTGGGAGTTAGGAG	alt_2272_fdr	12	16	23	11	17	18	21	15	25	8
GGTTTCTTCTCTTTCT	alt_2272_fdr	40	31	37	41	36	41	43	42	37	41
GAAAGTTTGGTGTTCG	alt_2272_fdr	26	35	34	26	51	22	26	18	34	27
GCCAGTTGTATTATTC	alt_2272_fdr	2	2	2	1	9	4	5	1	5	0
AAAGGCTCCCAACCTA	alt_2272_fdr	13	11	9	12	24	13	24	9	19	8
TTCTCGTACTGATGGA	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTACTGCTAGCA	alt_2272_fdr	7	17	12	9	5	8	10	4	15	4
GGGAAGCGTACCCGCT	alt_2272_fdr	35	44	53	31	49	38	37	28	56	28
AAGATAGTTAGACGGG	alt_2272_fdr	35	29	23	33	41	29	41	30	29	19
TTTCGAGCCCATGATT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
GGTTAGATGTCCCATT	alt_2272_fdr	56	67	60	57	74	43	73	42	67	45
TTTTATCCGATTCGAG	alt_2272_fdr	22	36	16	14	28	24	34	18	35	21
TCGTCTTATTATATAC	alt_2272_fdr	33	47	54	43	42	42	47	37	75	44
TCGGCTATGAGAGTCT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
GAAGCATGGACGCAGC	alt_2272_fdr	69	89	98	93	90	73	93	78	89	71
TAGGGAGTACCTAGCA	alt_2272_fdr	29	50	53	39	52	26	47	33	56	39
GCCAACCTGACTCATG	alt_2272_fdr	25	70	31	22	64	26	64	21	77	27
AGAGAGCTTACCGACT	alt_2272_fdr	17	24	28	26	19	10	26	17	36	10
CTATACGCACGGTTGG	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTGAGGCTTCTC	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGTGCTCATCTTA	alt_2272_fdr	7	6	12	8	9	4	13	8	4	4
CGATACGGTCCATCTT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
GAACTCGAAGGTACGA	alt_2272_fdr	10	5	5	9	6	7	4	5	10	8
AGTGCCGTCGCTGCGT	alt_2272_fdr	0	1	0	0	0	0	1	0	0	0
CACGCTGTTTTTAACG	alt_2272_fdr	22	36	23	21	29	27	27	21	51	24
TGCCCCGGTTAAGAGT	alt_2272_fdr	3	1	8	2	4	1	4	4	9	3
CTATGTACTCGCCACG	alt_2272_fdr	23	17	29	23	17	21	21	18	21	18
GCGCTTGCTAAATCTT	alt_2272_fdr	3	10	3	4	11	6	7	4	4	5
CCCCTCGTGCGGTTAA	alt_2272_fdr	12	14	10	13	14	4	18	7	14	4
GCGTCTATGGTAACTT	alt_2272_fdr	13	23	11	21	14	10	22	9	22	17
GGACATGCACTTCAGT	alt_2272_fdr	121	130	141	113	143	132	178	99	164	127
TCGCAGGGCGGCCTGT	alt_2272_fdr	97	108	129	126	133	89	123	102	161	89
GTACCAAGTGAGGTAG	alt_2272_fdr	3	4	5	7	9	3	3	3	9	6
GTTACCCCTCCTCCCT	alt_2272_fdr	7	10	14	4	9	4	8	6	6	8
GCTTAACTGATCAGCG	alt_2272_fdr	5	4	3	6	5	9	9	4	5	3
TCTTGTTGATTGCGTA	alt_2272_fdr	17	22	31	20	21	17	28	20	28	7
ATTTGTAAATTAGGTT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
ACTACATTCGCTTAAT	alt_2272_fdr	12	16	14	13	27	10	17	15	27	15
AGTTTCCTTCGGGTCT	alt_2272_fdr	4	11	14	6	11	6	16	6	10	14
TGATTACGGACTTGGC	alt_2272_fdr	78	115	77	68	104	67	92	64	102	67
TGAAATCAGCCTTTGT	alt_2272_fdr	27	29	27	31	32	22	35	26	36	19
GTACAGGAGCCCATGC	alt_2272_fdr	11	14	15	20	34	8	21	31	21	12
TACTTTGACCACATGA	alt_2272_fdr	12	20	27	15	28	23	26	13	36	20
TCAGCGTAATTGGTTC	alt_2272_fdr	41	39	37	37	60	27	51	21	36	27
AGCAAGGTAGCCTCCC	alt_2272_fdr	43	75	62	53	66	41	62	37	72	46
TTCTGGTGTATCCCAG	alt_2272_fdr	22	23	19	8	20	15	21	21	36	25
CTCTTTGTTATTGAGG	alt_2272_fdr	88	124	128	86	116	85	149	89	140	80
CGTTGTAAGTAGACCT	alt_2272_fdr	39	69	74	65	84	50	76	52	68	49
GCCAATGAGCCGTCGT	alt_2272_fdr	3	6	2	3	5	1	11	3	2	1
CATCTGAAGTAACCAA	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
GACCTGATGTGTTCCC	alt_2272_fdr	20	26	21	26	27	26	25	12	35	20
TTTCCTGACTGAGATC	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGTTAAGGGCTAG	alt_2272_fdr	16	16	17	7	18	13	20	12	12	10
CTAGGATTTAGTATCC	alt_2272_fdr	17	30	26	30	38	22	28	18	37	21
CCTGGGGGTAGTCCCT	alt_2272_fdr	55	51	51	36	69	23	71	46	65	34
CACTTATTGCAAATAG	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
AGAACAGCACCATGAC	alt_2272_fdr	27	22	20	21	18	16	15	19	14	18
GCAGGCTTAGTATGTG	alt_2272_fdr	76	90	96	73	120	69	105	61	101	63
GTCGGCACATCGGTCT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCATTTATAGGGG	alt_2272_fdr	3	1	2	1	3	1	1	1	2	1
TAGCACGTCACATCCT	alt_2272_fdr	75	73	76	64	71	69	62	61	82	61
CCGAATCATTTTATGT	alt_2272_fdr	59	123	88	81	119	67	115	93	116	53
GAATTTTTGGCGATGT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
GAACAGGAGCGTTGCG	alt_2272_fdr	4	10	13	12	17	12	15	9	18	5
TGCCCCGGGTGGCTAT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
CAAATTTCTATAAGCC	alt_2272_fdr	62	75	79	78	75	68	106	72	83	62
ATACGCGATAGTGCTG	alt_2272_fdr	4	5	0	1	1	5	9	2	3	5
TAAAGTTGCGTCCTGT	alt_2272_fdr	4	5	8	3	2	2	2	1	4	2
GGGGTTAACTGCCATC	alt_2272_fdr	12	23	7	12	11	8	16	15	14	13
TCACATGTGTGACAAC	alt_2272_fdr	1	14	5	1	3	0	3	2	2	1
AGGGAGCGTCGCGACC	alt_2272_fdr	15	15	37	30	24	19	36	30	26	19
TCGGTGGTGCTCGACC	alt_2272_fdr	7	4	11	3	13	4	7	9	21	6
GCTCAGCGGATTTGCT	alt_2272_fdr	18	16	27	22	13	14	21	19	27	13
TATGGGTGGGTGCTTA	alt_2272_fdr	9	38	16	9	63	11	49	11	63	7
TCCGTTTTTTAGTGTC	alt_2272_fdr	5	13	11	2	13	3	16	12	11	13
GGTGTACAGCTTAGGT	alt_2272_fdr	40	66	42	38	64	30	50	33	52	25
TGCTAGACATTAAGGC	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTGTTAACAAGAG	alt_2272_fdr	11	16	25	25	23	13	22	20	19	14
TTATGAACTGGGTTTT	alt_2272_fdr	82	93	127	98	113	80	97	60	102	81
TCATTACTTCATTTTC	alt_2272_fdr	15	10	13	20	11	19	8	17	18	24
CGTAAGGCCCGACCTG	alt_2272_fdr	3	6	8	4	10	1	11	7	5	1
GTCTATAGGCCATCGA	alt_2272_fdr	50	44	43	40	49	43	48	48	44	29
AGGGCAATTTGACGGC	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGCTTTGTGGAGT	alt_2272_fdr	27	53	31	25	52	36	47	19	62	20
CAGCCGAGATAATGCA	alt_2272_fdr	42	103	46	40	91	33	116	41	111	41
TGTACTACATTGCCCC	alt_2272_fdr	10	8	12	4	13	8	7	13	4	5
ACTCGATTCAGTTATG	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
GAAGCCAGGTTGGATG	alt_2272_fdr	21	20	29	14	23	19	15	17	21	17
TTCCGCACTCGAGGAC	alt_2272_fdr	58	69	70	46	49	56	60	57	84	55
GAAAGATCCCCAACTA	alt_2272_fdr	6	7	13	4	6	10	6	3	7	4
GGTTCTCCTAAAGGGT	alt_2272_fdr	5	1	4	5	1	3	1	8	2	4
TTGTGAGAACGGTATG	alt_2272_fdr	8	18	9	14	17	9	13	13	29	11
GTTCGGTATTCTGGGT	alt_2272_fdr	9	8	9	6	9	6	9	10	7	7
CCCGCTCGCCTATCAT	alt_2272_fdr	4	13	6	2	15	2	14	4	9	0
TTTAGACGAAAGATGC	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGTGCGAAAATAC	alt_2272_fdr	131	167	145	122	173	123	175	105	178	106
CTGCGATTATTAACAT	alt_2272_fdr	45	57	59	53	69	50	56	47	49	37
TGTCGGTTTAGTAATT	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
AACAGCTTTCACATAA	alt_2272_fdr	53	89	84	77	92	68	90	63	107	55
TGTCTTCCTAGTTTTC	alt_2272_fdr	1	0	2	1	0	2	1	0	2	0
GTGAGTATCAGACCCG	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
TCCCAACATACCTCTC	alt_2272_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTCATCATAAGTG	alt_2272_fdr	30	27	37	26	44	20	37	30	49	24
GGTAACTACTAGAAGT	alt_2272_fdr	3	2	1	2	0	3	0	1	5	4
CTAATCATTTCATTCC	alt_2272_fdr	20	32	37	25	29	22	21	25	29	21
TATATCTCTGATTTCC	alt_2272_fdr	83	105	105	96	91	83	116	78	99	84
CAGTATGAGAGGTTCC	alt_2272_fdr	12	11	14	9	11	11	10	8	15	8
GTCCATCTTGAGACTA	alt_2406_upstream	86	150	109	94	125	62	125	87	121	83
ACCCAGTTTGGGTAGT	alt_2406_upstream	0	0	3	1	7	0	1	0	2	0
GGCGTTCAGTGAATAG	alt_2406_upstream	17	23	17	10	17	16	22	8	31	14
CTCTTCCGCTCCTTTG	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
GATTAGTTTCCGCCCC	alt_2406_upstream	18	16	9	12	14	7	27	5	24	9
GTCCCCTTTTTTTAGT	alt_2406_upstream	4	14	1	6	15	1	5	2	9	0
ACCTGAATTGTCATTG	alt_2406_upstream	19	47	34	26	59	25	39	23	41	25
GGCTTCTATACGTGGC	alt_2406_upstream	40	38	32	31	56	23	65	25	52	31
TTTTTAGATGTTTTGT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
AGAGCGCAATATCACC	alt_2406_upstream	24	28	30	30	27	19	40	22	49	26
TGCCTTTGATTCGCGG	alt_2406_upstream	41	49	27	30	62	30	65	29	46	24
CCGTTTGGATATCCAT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
GGCTCATTGTTTCAGG	alt_2406_upstream	22	35	24	25	46	15	36	20	44	25
GAGTTTGCATCTTATC	alt_2406_upstream	17	21	29	24	19	20	25	13	36	13
ACGCTTTGCCCAGGAT	alt_2406_upstream	20	27	22	13	13	23	26	14	24	15
TTTGGGCGACCTACAC	alt_2406_upstream	12	19	10	13	12	10	20	15	19	12
TCAGAAGCTTTAGTGT	alt_2406_upstream	3	5	3	4	5	5	12	2	5	4
GCGGTACTAGCAAGCA	alt_2406_upstream	6	9	6	5	9	2	4	3	7	2
AACACCCCTCTCGTCT	alt_2406_upstream	12	29	16	21	49	14	38	10	49	19
CTCGGCTGTCACGGGG	alt_2406_upstream	0	4	2	3	4	3	4	1	2	1
GTTAACAGATCAGATT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGTCGTCCGCGCC	alt_2406_upstream	16	28	14	12	25	15	28	11	36	17
ATGCCTATATTAAGTG	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
TTTCATATTTGTTTCA	alt_2406_upstream	151	186	193	176	217	134	201	176	193	162
TCTCTGTCGCTGGCCA	alt_2406_upstream	4	4	2	4	3	2	3	0	5	0
GTGGGTTCCTACGCGG	alt_2406_upstream	9	19	18	15	25	20	35	10	26	9
CACCTTAAGGGCGGGC	alt_2406_upstream	115	140	151	107	143	99	165	103	161	100
ATAGATATGCCCAAAT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
GTGAATAAGCCGTTCC	alt_2406_upstream	68	84	66	39	82	55	95	44	109	63
TGACCCCTGTATTTCA	alt_2406_upstream	11	5	7	8	6	18	12	11	18	8
CTATTTTTCATAAGGT	alt_2406_upstream	17	21	15	12	21	13	34	12	24	12
CCTGTAAGCCGAGGCC	alt_2406_upstream	5	13	9	8	13	6	22	6	4	5
TTTAGCCATGTAGCCA	alt_2406_upstream	12	18	13	17	13	11	28	13	22	11
CCATCACATTACTAGC	alt_2406_upstream	12	15	10	11	13	8	9	6	8	7
TGCGCGTGATCATTCA	alt_2406_upstream	5	5	3	1	2	1	5	2	0	2
GGCACTATTGTCCAAG	alt_2406_upstream	12	23	22	16	21	8	21	11	32	11
GATCTCTTATTCACGA	alt_2406_upstream	27	47	37	30	39	43	55	35	50	28
TGTCCAGCGGTCCGTC	alt_2406_upstream	25	37	32	35	58	39	59	34	55	36
CGTCTTTGAAGCGGAA	alt_2406_upstream	2	4	5	6	4	2	6	1	6	1
AAGTCACTGGGTCACG	alt_2406_upstream	41	82	46	46	63	42	62	33	71	44
ATTTTAGAGTTCGGAG	alt_2406_upstream	3	3	5	3	4	3	3	2	3	2
CTGACGTTCTGAGTAT	alt_2406_upstream	15	14	11	14	32	13	25	19	20	16
GAATTCAGGCGCCATG	alt_2406_upstream	13	12	16	8	8	12	9	6	28	13
CTTATAACTGTTAACT	alt_2406_upstream	51	78	59	58	64	36	79	37	98	41
GCTTTTATTTCTACTG	alt_2406_upstream	49	78	39	50	75	23	59	37	69	28
TTTTTGACGCGACTAG	alt_2406_upstream	2	2	2	2	4	1	2	2	8	2
AGCGCGACACGATGGT	alt_2406_upstream	15	27	20	12	20	19	23	15	26	14
TGGTCGCTTCGTAATT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
TTGCAAATTTATTCGC	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTTGGTTCAATG	alt_2406_upstream	10	24	13	5	11	9	31	5	21	11
CTGTTCGCGCAGGCTC	alt_2406_upstream	13	12	27	7	21	9	25	14	18	14
GGTGTCGCCGATCCTT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
GGTACGCCTCGCATGT	alt_2406_upstream	104	133	107	92	156	109	164	90	187	106
ACCGCCTACCAATAAT	alt_2406_upstream	22	29	32	30	34	18	47	18	43	19
GACTGAGCATGATATA	alt_2406_upstream	36	55	51	33	63	26	58	34	75	25
TCGTTGCGATTCTTAC	alt_2406_upstream	9	11	15	11	24	9	20	8	16	8
CGGGTGGTCGTGGACT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTACATTGTCAAT	alt_2406_upstream	33	44	28	18	49	27	69	30	50	32
CACATCGTTGGATATG	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
CCATTCCTCGGCCTAC	alt_2406_upstream	73	106	73	71	87	59	111	54	112	55
GTCAGCACTGGAAAGC	alt_2406_upstream	59	117	93	62	135	64	163	67	134	80
CCGTTTAGGTGGGGTT	alt_2406_upstream	8	17	7	9	10	2	14	7	17	7
TTCGGCAACTCGGGTC	alt_2406_upstream	18	25	15	20	35	14	34	19	34	13
ATTTTCGGCCGATGTG	alt_2406_upstream	44	69	50	64	100	61	93	55	83	62
TGGCGGACTCTATCCT	alt_2406_upstream	30	57	29	37	41	25	56	23	55	21
TACGGAATTGTATTCA	alt_2406_upstream	29	43	45	26	51	32	71	33	64	31
CAGTTGCGCAGCTGGA	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCCTATTGGCCGA	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCTTATATATTTC	alt_2406_upstream	14	24	28	15	27	20	23	13	28	22
TGTCAATATGCTCTTC	alt_2406_upstream	13	21	18	17	12	17	22	13	19	16
CGGGTTATTCTGGCAT	alt_2406_upstream	9	9	3	3	7	4	9	1	6	3
TGGCTCTTTTCGACCA	alt_2406_upstream	24	45	26	23	34	22	33	19	41	24
CATGATCACCCCAGGT	alt_2406_upstream	34	41	30	34	43	26	53	27	55	30
TAGGGATTGCGTACCT	alt_2406_upstream	31	117	35	32	120	36	97	24	121	24
GTGATTGAGTTATTGA	alt_2406_upstream	24	23	21	15	35	20	35	17	37	4
CCTTCAAACGCTCTAA	alt_2406_upstream	7	9	8	11	5	9	17	4	20	13
TCGCTCCTTGGGGAAG	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCTCATTGAGTCG	alt_2406_upstream	14	13	10	9	21	4	23	6	27	8
TTTGCAGTTTTCTTCT	alt_2406_upstream	18	27	31	40	25	11	19	18	26	13
ACCTTTTGTACTCCAC	alt_2406_upstream	6	32	9	4	36	4	42	12	47	7
TCAGACTCCTGCGGTT	alt_2406_upstream	11	18	16	7	16	14	15	6	17	4
TGGCCGACCCTACTAC	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCCCCCAGTCTCG	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGATGTTAGTTAA	alt_2406_upstream	21	45	46	34	42	19	51	12	63	22
CGACATTTAACTTGCG	alt_2406_upstream	26	26	25	26	44	27	37	24	21	14
GTGCATATCGCGCCAG	alt_2406_upstream	18	47	37	43	38	31	33	18	43	42
AGTGGTGGAATCGAGA	alt_2406_upstream	22	32	21	16	25	25	34	14	37	12
GTTTGTTTTTTGTAAC	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGTCTGAATTACT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTCGTTCAGCGGT	alt_2406_upstream	51	120	70	50	134	55	124	64	128	42
TCCATATAAGTTATCA	alt_2406_upstream	14	18	13	4	23	7	22	10	13	15
CGGAGTTTATAGGAAC	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
TTAATCGATCTCTGTC	alt_2406_upstream	13	25	26	32	25	23	36	19	29	10
TTTTTTGCTCGATTAT	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
CATGGTTTCAAACACT	alt_2406_upstream	5	12	6	4	9	2	17	3	15	3
GTACTGGGCGGCATTC	alt_2406_upstream	3	8	10	8	7	2	11	4	8	2
TTCCCTGGAAGGGCTG	alt_2406_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGGATACTCGCTG	alt_3238_reverse	24	38	30	19	48	26	35	17	43	13
CTGATGTAATGTATCG	alt_3238_reverse	12	6	9	7	7	7	8	5	13	11
ACTTACCATTTATGTG	alt_3238_reverse	3	32	3	1	40	0	31	2	45	3
CAGTGCTAAATCTTTC	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
AAAATGGCGCCACATC	alt_3238_reverse	14	12	20	34	27	17	18	19	26	17
CTTCTTTCTTGCTGCC	alt_3238_reverse	100	168	108	98	180	75	165	100	174	81
GCATCATGGTTATGCT	alt_3238_reverse	1	4	1	5	2	1	7	6	7	8
TACACGTCGCTGGACC	alt_3238_reverse	47	66	56	42	68	36	80	49	79	32
GACGCGCCGTCTTAAC	alt_3238_reverse	3	11	3	1	6	2	8	3	11	0
GGCACAAATGACGCAT	alt_3238_reverse	37	41	44	36	59	28	54	28	63	26
CCAGGTAAAACTTAGC	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCTGTTTCGATGG	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTTATCCTCCGAG	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
CTGATCGGTGCTCTTA	alt_3238_reverse	4	20	9	8	13	3	19	5	11	5
CTGCTCGTCGCGCTTA	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
ATATACATGCTGGGCT	alt_3238_reverse	67	125	109	76	166	69	136	88	142	72
GGTGTGTTTCTTAACT	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTTTCCGGTCTCT	alt_3238_reverse	46	65	49	47	67	48	63	38	66	49
TAAGTACCGCGATCCA	alt_3238_reverse	25	31	28	24	27	13	40	16	26	7
GCATTCGCGAGCCTAC	alt_3238_reverse	1	7	6	7	6	3	9	2	4	4
CGTTACCTTTTGAAAG	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
ACCTAGTCGGTACTGC	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
GTTATTAGCGTGCTTC	alt_3238_reverse	10	13	10	6	11	12	14	4	11	5
CTTGATGCAATTTTTT	alt_3238_reverse	1	4	2	0	2	0	1	0	2	1
ACATAGAGGGCGGTTG	alt_3238_reverse	9	34	17	17	39	17	28	14	27	8
GCTCATAGTCCAGCAC	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTTAACCTTTGGC	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
CATCGGGCTCTTGACG	alt_3238_reverse	41	58	37	33	67	35	70	41	70	32
TGGGTGGCACTATCGG	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
CCTCATGCGATGATTT	alt_3238_reverse	26	41	39	31	44	18	49	19	22	20
TTATGTTGACCACATC	alt_3238_reverse	3	11	3	2	4	5	1	1	7	2
CCCCGCATTCAGGTGT	alt_3238_reverse	3	5	2	3	6	2	17	3	9	0
TTTTACCAGTACACAC	alt_3238_reverse	1	15	1	1	13	5	16	1	15	0
CCGTGAGACGTTCAAG	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTGGGTGATTAGT	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTTAAGTCTGATT	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
TTAACAATTGACCGGT	alt_3238_reverse	20	61	40	33	76	22	51	28	68	22
GCTCCAGACTATGACG	alt_3238_reverse	115	195	136	116	199	105	192	91	199	87
CTGTTGCGGGTCTATG	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
AGCGGCCACTTTTGCT	alt_3238_reverse	2	14	2	3	7	2	16	6	7	4
CCGTATATGCTCTATA	alt_3238_reverse	1	10	1	5	11	3	7	2	10	2
GCTACCCAGACTCACG	alt_3238_reverse	14	55	34	16	47	13	47	15	40	23
GTTACAACCATCCCTT	alt_3238_reverse	30	61	30	34	48	25	57	41	52	33
GAGCTGAGTGAATTCA	alt_3238_reverse	0	0	0	0	0	0	0	0	0	0
GGATGCCGCTCCCTTT	alt_3238_reverse	4	7	7	1	12	3	9	4	16	1
TATGCGTGGCAGCTAT	alt_2754_RC	8	7	9	14	9	5	7	12	9	7
CATGTTGCTGCTCTCG	alt_2754_RC	78	80	101	92	65	66	71	68	72	74
TATGGTAATTCTCAGC	alt_2754_RC	5	4	6	18	1	7	2	7	5	4
GCTAACTTCAACTGCG	alt_2754_RC	7	16	18	11	18	10	11	14	19	9
TGTTCGAATGTAATAC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GGGTATCAGTTACGTT	alt_2754_RC	2	2	6	5	4	7	3	1	3	1
ATTATCACAAAGCGTT	alt_2754_RC	3	4	18	13	14	10	8	11	7	18
GCCCCGCTGAGCTGGT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
AAACGTGTTAAGGCTT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
AAGTTGCTACATTTCG	alt_2754_RC	10	15	20	27	16	11	17	13	12	10
GGCCATGGCCGCTCAA	alt_2754_RC	39	37	55	50	40	36	41	42	48	34
TAATCTTCTAGGGCGG	alt_2754_RC	25	19	33	17	17	21	36	16	34	13
ATTTCCCTGCAACGTT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ATTGTGTATGCAATAA	alt_2754_RC	78	55	71	67	61	83	59	47	82	70
ATCCTAATATATCTTT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CGCCTTTACTCATTAA	alt_2754_RC	26	41	65	44	36	32	47	27	40	35
CAGTCTTATCGACCAT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ACGGCGTCTATTTCTG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TTTATTTTGTCAAGAG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TCCGGCGGTACTGTCC	alt_2754_RC	33	53	57	33	49	40	45	34	55	26
TACCAGCATGGGAAGG	alt_2754_RC	5	10	9	2	7	6	13	0	4	8
CTGGCTAGAATCAGCT	alt_2754_RC	20	30	39	34	32	21	15	21	19	21
ATCACTTCTGATTCAT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TTCGAAAGTCGCTGAA	alt_2754_RC	53	57	74	55	58	51	53	50	57	50
TCCTGTACACAGGGTA	alt_2754_RC	33	40	42	27	32	29	40	29	33	23
ACCAGTTTACCAAGAA	alt_2754_RC	5	10	7	2	5	2	3	6	7	5
GGCTAATCTCTTGGTA	alt_2754_RC	26	29	35	29	26	33	49	27	30	27
TTTCTTTCTACGTCTA	alt_2754_RC	14	19	21	11	26	21	19	22	20	20
TACACTAGACAATTCC	alt_2754_RC	16	12	15	11	21	8	27	11	17	5
GTTGCCCGTTATCGCG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CAGCGGATTGCTACGT	alt_2754_RC	4	7	3	3	9	6	4	4	4	0
ATGCTGCCCCGGTTCA	alt_2754_RC	44	72	67	70	53	56	61	56	64	55
GTTGTAGTTTCGCGAG	alt_2754_RC	257	243	319	273	275	252	304	261	303	245
TTGTCCTCCCGTTGTT	alt_2754_RC	13	19	11	6	20	9	22	6	16	12
CGACTTGAGGCCTGTT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TGGGGCCGACCCTGGC	alt_2754_RC	3	5	8	5	5	9	3	6	8	8
ACTTGGTGGTCATCTT	alt_2754_RC	57	36	69	49	46	65	53	52	64	57
TGCTTTGATTAACTTT	alt_2754_RC	11	15	8	10	7	9	11	11	11	5
GTTGAGCTGATGATGT	alt_2754_RC	1	0	0	1	0	0	0	0	1	0
GGTGTTGTACAGTTGT	alt_2754_RC	144	113	141	116	148	122	161	108	149	115
GCAAGCTTGCGGCCGC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ATTCTATTTTTAACCC	alt_2754_RC	0	4	2	2	4	3	2	7	3	2
TGTCCTAGCGCAATAG	alt_2754_RC	18	28	33	18	25	16	18	15	29	15
AATAGACGACCTCAGC	alt_2754_RC	16	14	15	13	12	13	11	12	19	9
ACAATACTATATTCTT	alt_2754_RC	60	68	99	72	78	74	102	74	63	66
CGGTGAACAGTACTGT	alt_2754_RC	97	83	86	89	104	76	90	73	110	74
CATAAAGTCTGGCCAA	alt_2754_RC	10	8	16	13	13	5	14	10	18	11
ATTATCTATAGGCCAT	alt_2754_RC	4	7	4	5	9	1	5	5	3	5
TAGAAGGTTGGCGTAT	alt_2754_RC	1	6	10	4	1	8	3	5	7	3
CGCATGACAATATCAA	alt_2754_RC	20	26	31	41	19	22	34	28	29	18
AGATGTGTTGTTACGA	alt_2754_RC	20	18	26	17	18	9	21	20	17	18
ACATTATACGAAGTTT	alt_2754_RC	9	4	6	3	4	4	1	5	1	2
GACGATAGTTGCACTC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CATAGCAATTATGCCT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CCGTTACAGGCCTGCG	alt_2754_RC	8	4	13	7	7	5	6	9	11	9
TGGCTTCACGTGTTAG	alt_2754_RC	11	27	18	15	28	10	17	17	18	15
CCAGTGCGGGCGTTCT	alt_2754_RC	120	102	159	118	128	83	140	105	152	95
TGTATAATTGCGCGCC	alt_2754_RC	16	20	24	26	15	12	25	8	6	14
GGAAGGCTTTTATAGG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ATAATCCCATGTAAGT	alt_2754_RC	27	17	18	13	28	13	17	14	18	18
TCTGTTTTTCGTAGTG	alt_2754_RC	13	11	21	12	17	11	13	14	13	9
GGCTGTAATTTCTCCT	alt_2754_RC	49	29	30	28	31	31	44	39	33	29
GTCACGTCATTTGGGC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTCCGGGTGGGG	alt_2754_RC	318	294	415	388	327	379	359	338	329	316
CGGGTAGACGTACAGT	alt_2754_RC	6	8	9	9	12	9	9	7	11	1
GTTAGGGAACTCTCTT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GCAATAGCGCTTCCTT	alt_2754_RC	14	28	24	12	22	15	13	20	25	12
CCGGGTCGGACCGTAA	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CTTATCCGTTTCGCAA	alt_2754_RC	57	67	51	38	66	39	64	36	72	35
TAGTATGTGTTAAAAG	alt_2754_RC	70	83	64	73	50	62	81	51	91	48
GAACCCGTCCATGGCT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GTTAGTGTCATCAGAG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CCAACTCGTACCCGCG	alt_2754_RC	27	26	38	42	29	28	25	24	34	24
GTGGTTAAGCGCATAT	alt_2754_RC	65	55	71	59	59	78	66	61	73	66
GACACTTTGCATTTGC	alt_2754_RC	5	5	10	9	10	13	9	11	11	8
GCATCGGTACTAAAGT	alt_2754_RC	7	13	10	15	19	8	15	14	17	10
AAAAGCGGGTTGCCTT	alt_2754_RC	9	22	19	18	11	12	25	10	21	12
TTATCACGCGGCGTGT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TAGTAACAGGCACCCA	alt_2754_RC	131	114	126	127	138	125	120	116	134	102
CTGTTTCTGGTACGTT	alt_2754_RC	36	38	54	36	37	35	47	44	54	45
ATTGTTCAGACTGGAC	alt_2754_RC	12	25	36	20	18	19	24	27	31	18
TTCTTTACGTGTGCTT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TACCCTTGGCGGAGTG	alt_2754_RC	69	62	87	78	67	70	72	60	61	80
CGTCCAGAGCCAACTG	alt_2754_RC	125	134	143	137	124	120	155	103	165	88
TATAAGAGGCTACCGT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GCCCCACGTGCGTTAT	alt_2754_RC	31	37	41	33	32	42	36	26	40	19
TACTGGATTCTGTCTG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GGTTACTCAGTCATCG	alt_2754_RC	7	14	14	5	8	9	8	11	14	10
GCTCCAGGCATAACGT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CGTGCGATACCCAAGA	alt_2754_RC	74	76	76	54	68	63	78	72	103	74
GGGGTTGCTCTTTTCT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GCCTCGGGATATCGTT	alt_2754_RC	17	9	19	13	12	11	17	9	11	11
TCGTGTCTTTAATCGT	alt_2754_RC	11	12	13	11	16	12	14	8	16	8
TTCGTCGTGTACTACG	alt_2754_RC	4	6	4	4	10	5	7	3	6	2
ATTATCTAATTCTGAT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CAGCGTCTGTATGGCA	alt_2754_RC	23	20	30	17	24	23	19	18	32	21
ATGTACGCAGATAAAA	alt_2754_RC	133	145	201	149	131	130	152	145	149	134
TCGTGCACAACCTCGC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCAGCATTTGAT	alt_2754_RC	14	12	25	26	13	27	12	15	17	13
ACCGCTTATTACCTCC	alt_2754_RC	32	33	35	37	41	26	54	28	36	27
TTCCAATACCTTCGGC	alt_2754_RC	34	27	31	24	20	25	18	29	31	23
GCCTTTCCACAGGGAG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TCGGCAAGGCAATTGG	alt_2754_RC	15	20	20	13	30	29	16	18	14	21
CTCACTTGAGAAGCTA	alt_2754_RC	7	3	11	13	7	5	8	12	12	15
AGGGATTTTAAGTGCT	alt_2754_RC	37	48	51	56	39	40	36	36	34	24
TTTCGTTCTCGTGCGC	alt_2754_RC	33	35	43	44	34	28	34	25	29	27
TTCAGGCCCGCTCATA	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TGTTCCGTCACATAAG	alt_2754_RC	18	17	24	17	16	26	22	23	18	24
AACTTTTATAGTCTTG	alt_2754_RC	53	62	48	57	30	42	44	37	41	47
CCTCAGCAATGTCTAA	alt_2754_RC	8	20	8	12	16	5	8	6	12	7
TCACCAGCCTCTTATC	alt_2754_RC	19	32	18	27	12	21	10	21	13	25
CACGCTCGCCCGTTAG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GGCAGGAACGGAGGCC	alt_2754_RC	2	7	3	7	4	2	1	3	0	0
CGTTCGTATTATTTTT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GTGAATTCACGTTTGC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GTGGTCCGTTGATTCC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ACGATAAGCATGCTTA	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ACCCACCTACACAATA	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GATCCCGGTGCGCGGC	alt_2754_RC	12	33	21	14	44	14	42	16	58	16
ATCTGTGTATCTAGAT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TGTAGCACCAACTGTT	alt_2754_RC	26	37	37	36	29	28	46	36	32	19
ACTCTGGTATCTGATA	alt_2754_RC	17	20	17	8	13	10	13	12	13	8
TGACCTCAACGTTGTT	alt_2754_RC	15	11	23	10	9	13	12	7	15	8
TGGTTTATGATTGCCG	alt_2754_RC	14	11	15	11	6	4	13	14	8	6
CCAGATCCCGTTTCTA	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
TCTGAATACCGCGGCT	alt_2754_RC	64	39	51	42	46	44	49	44	36	41
TTCTCGCATTATGGCG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ATGCGCGTTTCCTTTT	alt_2754_RC	51	40	59	49	65	37	68	56	49	59
GCGGCTCGCTTCTAGC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ACAACTACATCTCATT	alt_2754_RC	19	28	26	24	32	23	28	24	41	12
GTTTAAGCCAGGACCC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ACGGTTCTAGTCCAGG	alt_2754_RC	61	70	87	56	55	65	63	56	67	52
AGTGTTAGTCTATTTA	alt_2754_RC	6	5	9	6	2	4	5	0	9	7
GGATTCGAGGATTGCA	alt_2754_RC	24	17	34	21	21	13	27	20	22	17
CCGATTTCACGTGCAC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
ATCCACTGCCTGTTCG	alt_2754_RC	1	0	5	1	3	5	2	3	1	2
TAATGTTGAATTATAT	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
GGGCAAACTCTTCCTT	alt_2754_RC	11	10	15	15	9	13	10	22	17	9
TTTGGACCTTGAATGC	alt_2754_RC	58	67	60	49	61	39	49	41	64	49
GTTGTATGTTTTGCAG	alt_2754_RC	90	103	135	100	96	99	127	103	126	102
ATGCAGTATAGTGCTC	alt_2754_RC	10	9	14	8	15	10	10	17	12	7
CTCTGTTCAGGAAGAA	alt_2754_RC	80	85	121	93	99	75	89	93	112	74
GCTATTGGGGTCCTGT	alt_2754_RC	0	3	3	4	0	0	0	2	3	2
TATCTGTCCCTCCTCT	alt_2754_RC	9	26	18	13	28	10	31	21	24	12
CTGGTACTCTATGATT	alt_2754_RC	7	7	12	7	12	17	8	18	6	12
GGGTCGTTAACGGTAC	alt_2754_RC	144	188	176	140	157	125	146	133	191	118
GCCGTCCTGTTCTTTT	alt_2754_RC	62	74	92	85	92	68	90	76	83	55
GATTCTGGTAGATGAC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CCTGCGAAATATATCC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CGTGGCCCTAGCTTTC	alt_2754_RC	47	60	68	41	35	57	52	53	57	55
ATTGCAGGAAGTGTTT	alt_2754_RC	7	5	12	10	5	10	7	10	8	4
AAGGCAATGCAGGCGT	alt_2754_RC	8	5	10	9	6	8	5	7	13	7
TGCGGTCCCGGGCGTC	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
CGTGGATTGCGTAGTC	alt_2754_RC	4	4	10	8	17	3	4	8	11	2
GAAATCCTGGTATGCG	alt_2754_RC	0	0	0	0	0	0	0	0	0	0
AGGACACAGATTATGC	alt_2754_RC	0	0	0	0	0	0	0	0	0	1
AACTCCCGCCATTTGG	alt_2754_RC	12	21	9	12	17	8	16	11	22	10
ACCTTCGGACAACCCT	alt_964_reverse	14	10	25	18	7	10	17	12	12	17
AGGAGATCGTCAGCGT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGGATCATTGGAT	alt_964_reverse	219	155	303	213	144	222	169	223	167	202
TTTTCACCTTGAGAGC	alt_964_reverse	31	22	26	27	28	28	22	24	14	24
TACAACAGTCACCATA	alt_964_reverse	98	87	138	131	85	119	91	113	89	104
CCTCAAGCGATTCATG	alt_964_reverse	25	16	27	28	19	34	21	28	22	36
ATCATAACTTACCACA	alt_964_reverse	4	12	11	9	18	6	26	9	22	7
TCACGCTCTAATTGCT	alt_964_reverse	107	54	127	95	59	78	41	77	53	64
TTTTCACGGCCCATGG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGGCCCGACTCTA	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
AATTCTAGTATACGGT	alt_964_reverse	7	11	10	7	5	6	4	6	4	8
AACCACTGGACTGATT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTTCAGTCTATGT	alt_964_reverse	13	11	18	17	15	26	22	19	11	13
CAGCAGAGCGCGCATA	alt_964_reverse	136	88	153	150	91	153	113	130	96	100
GTTAGCGTGGCTGGAT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTGGGTAGTAGCG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
AAATGACTACAATGCC	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTAAGCTGCGCG	alt_964_reverse	23	11	34	33	10	24	19	21	28	20
TTATATGAGGATGGGC	alt_964_reverse	166	107	168	159	85	132	99	111	83	121
TCGCTGCGTCATGAAT	alt_964_reverse	242	121	288	258	120	251	139	192	140	225
AAGATTCTATTGCCCG	alt_964_reverse	7	3	8	4	2	8	1	6	4	2
CAGCCGTAAGCTCGAG	alt_964_reverse	204	163	281	219	149	204	164	209	160	183
TCAAAGGCGTTTACTC	alt_964_reverse	119	88	132	130	80	104	68	103	69	106
GTCGTCCAACGTAGTA	alt_964_reverse	65	34	62	64	41	67	40	59	42	59
GGTCCTTAACATTATA	alt_964_reverse	73	70	89	94	65	69	51	64	79	86
TTAGCGAAGCCGAGGT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGTGAGGTTCCTG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TTAGATTTTCCCGGTG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TGTCGCGGTCAGTCCG	alt_964_reverse	10	7	18	15	9	9	8	12	11	9
CCAGTCTGGGAATCGA	alt_964_reverse	13	21	18	14	12	16	17	10	14	11
CCTTATGATGGTTGTT	alt_964_reverse	66	39	65	51	54	70	42	61	47	39
CCGGTGGATCTTTCTT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTGCCAGTTATTA	alt_964_reverse	26	25	37	24	31	35	22	26	24	23
TCGCTGACACTTTCTA	alt_964_reverse	15	10	25	15	14	11	24	15	10	11
CTTTATCACCATTGCC	alt_964_reverse	49	45	48	52	50	45	33	56	51	51
TATGATGGATTATCTT	alt_964_reverse	20	16	31	21	17	19	11	22	17	26
AGTTAAATTAGGTCCC	alt_964_reverse	28	43	40	28	40	33	45	29	48	22
TGTTCTTGTCCATCGC	alt_964_reverse	13	12	28	17	17	19	7	14	13	23
CCTCGAGTATTGAGTC	alt_964_reverse	96	82	112	85	95	83	77	88	96	91
AAATTTTGTTCAGGGT	alt_964_reverse	9	7	16	10	5	13	3	12	5	8
TTGCGGATAGCTCGGT	alt_964_reverse	122	64	141	124	67	120	81	97	99	124
TTGAATTGCCTTTGTG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGAGTTCCATAGA	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTAGACCGTTCAA	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGCACGTGTTCAC	ref_964_reverse	42	30	50	41	42	38	48	50	36	39
TCACTAGAACTATACC	alt_964_reverse	99	66	123	87	72	74	76	93	72	73
CTCTAGGATTAATATA	alt_964_reverse	78	50	137	96	61	79	78	72	57	89
TGGTAGGAACGTACAT	alt_964_reverse	80	61	94	77	65	76	68	78	54	45
CAACTATCTCCCGTGG	alt_964_reverse	114	92	132	127	119	130	125	102	108	105
GAATAGCCCTTACCAG	alt_964_reverse	3	2	4	6	6	0	1	1	0	3
CATTTGTAGAATTGGT	alt_964_reverse	66	52	94	62	51	72	54	75	69	59
GCAAGCATAGGATCCA	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
AGGAAAGATCTCGCCG	alt_964_reverse	117	72	164	102	93	129	76	139	74	105
TCCGCCCCTTGGATTG	alt_964_reverse	81	45	84	72	41	53	54	56	57	40
ATAGGCTTGCCTGATT	alt_964_reverse	43	17	27	23	25	24	21	18	23	17
AATGCCTATTTGCTAT	alt_964_reverse	77	52	66	71	36	54	34	49	34	49
TGTCCCCCCATCGCAG	alt_964_reverse	55	27	62	50	39	64	35	58	50	33
TCCGACTCCGTGACTA	alt_964_reverse	14	14	13	28	18	10	8	18	16	21
ATTCATGGTTATAGGT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGTTCAGTATGAG	alt_964_reverse	46	42	60	58	34	47	33	87	31	54
AATCGTGATATTTCGT	alt_964_reverse	60	40	73	69	36	70	51	62	54	69
AAATGCGATTGGTATT	alt_964_reverse	81	64	129	97	51	77	65	70	40	77
TCTAGGATGGGTTCTT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTGACCATCTGTA	alt_964_reverse	76	46	67	82	65	80	48	74	53	66
GAGCGCTTAGGCTGTC	alt_964_reverse	35	24	45	33	20	33	17	26	11	28
TTTGAAGTGGGGGCGC	alt_964_reverse	18	16	29	13	12	12	6	22	14	11
ATTACTTTATGTATCG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
AACAAAGCTGGTGCTA	alt_964_reverse	144	83	181	152	100	154	114	122	100	140
TGCACCTTATTCGTCC	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
GGAAGAAAACACGTCG	alt_964_reverse	10	10	13	14	11	12	9	8	12	13
TGGCCCGACTCATCAT	alt_964_reverse	61	43	70	71	67	61	56	72	63	61
ATAGATAATGGACATT	alt_964_reverse	137	87	172	140	88	171	91	159	114	111
TTTATGCCATTTCTTG	alt_964_reverse	44	53	59	52	38	51	36	45	20	47
TGTCAATACCGTGTGA	alt_964_reverse	183	124	207	177	109	150	122	185	96	158
ACGTTTCTCGGAATCG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGCGACGCTCCCG	alt_964_reverse	18	25	26	13	14	20	29	16	14	15
GGCTGGGGGCGCACTA	alt_964_reverse	230	141	254	232	172	226	169	235	160	197
TCCTGCATACACCTGT	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
CATCTCTTATTCATTG	alt_964_reverse	155	114	172	157	113	140	111	128	123	138
CTTGTCATTTATAAAT	alt_964_reverse	29	15	38	27	18	23	26	32	24	14
ATTCGATATTGGGCCC	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCTTTTGTCGGGG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TTGGAAAAGGTGCTCA	alt_964_reverse	72	49	90	65	46	59	52	57	42	73
CGCTTTATCTTACCGG	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCAAAGGCATCAT	alt_964_reverse	81	62	88	84	48	84	52	80	55	74
TTTCCCTTATTGAGCC	alt_964_reverse	14	6	23	18	5	13	7	10	4	13
TCCAGAATTGTATACT	alt_964_reverse	5	5	8	11	8	4	8	8	7	6
AACGATAGTGGTGGCC	alt_964_reverse	30	27	33	25	11	37	11	31	13	34
CTATTGCTTGATCATC	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
TTCTACAGCATGCTAG	alt_964_reverse	98	64	125	92	95	102	82	96	89	83
TCGGGTAGGGGCGCGG	alt_964_reverse	18	6	12	14	14	9	10	13	10	9
TCCCCCCTTTGTCTAC	alt_964_reverse	0	0	0	0	0	0	0	0	0	0
CTGGAACCGTTTTTAC	alt_2817_RC	157	223	196	160	216	149	232	153	239	141
GTGAGTTTATCCATAC	alt_2817_RC	39	22	25	21	21	29	23	14	37	17
TGAGGTAGGTCCCCTG	alt_2817_RC	69	116	111	70	106	70	122	90	127	60
GTCATCTCATCTACCA	alt_2817_RC	4	10	1	3	6	3	3	2	11	4
TCTGAACACTGATGGC	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
GTCGCTTGCTCTATGT	alt_2817_RC	7	12	19	18	26	6	24	8	24	7
GACTCGCGCGCTTGAT	alt_2817_RC	17	42	28	33	34	27	29	23	38	29
GAATGTCGTAACAACC	alt_2817_RC	10	18	12	10	25	10	12	2	19	8
GGTTACCTATCTCGTC	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
TTTGCCGGCCTGAGGG	alt_2817_RC	25	24	23	13	31	26	25	4	26	13
TCCGCCTCTTTTTATT	alt_2817_RC	15	39	25	15	40	15	35	23	49	19
TTTAAGAAGCTCACTC	alt_2817_RC	0	0	1	1	1	3	0	2	0	0
TTGTGGGAGCTGTTAT	alt_2817_RC	7	7	5	5	9	5	9	3	14	4
CGGTTGTAGACGGAAA	alt_2817_RC	1	1	1	1	2	3	2	0	2	1
CGTAGCCTGGGCGGGT	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
AAGGAGTGTCAGTTTA	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
GGGCCAGGGCCCTTCG	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
AGCGTAGTAGTTCCGT	alt_2817_RC	6	13	10	10	6	7	19	8	12	12
TCTTGACTCTGGGTTG	alt_2817_RC	67	91	71	70	121	58	91	55	110	50
GCCTAGGCGTATTTCT	alt_2817_RC	114	158	130	107	176	95	146	93	161	107
TCTCTCGGTACTGCTA	alt_2817_RC	14	15	12	17	20	12	34	6	11	14
ACTTTACGGCACTACC	alt_2817_RC	48	40	48	34	34	42	38	20	34	32
ACATTGTCCATGCCCT	alt_2817_RC	39	62	54	41	61	34	60	38	62	37
TTGGATATTTTGAGAA	alt_2817_RC	40	62	63	41	63	45	75	43	74	46
TCGATGTGGGGTGCTA	alt_2817_RC	19	37	27	23	37	19	46	15	30	15
CGGGTGTTTGACCGGG	alt_2817_RC	115	136	114	85	123	86	129	80	141	90
ATTAGTTTCTCCGTGG	alt_2817_RC	7	7	11	3	6	5	8	0	11	4
AAGAGTCCACCGCCAT	alt_2817_RC	41	44	40	46	50	37	47	41	50	43
GCCTCGGAGCCCGCCC	alt_2817_RC	49	60	72	52	74	52	77	41	76	49
AATGGACGGTAAGAGG	alt_2817_RC	7	5	9	9	6	4	5	7	10	13
TTACACTTAATATCAT	alt_2817_RC	4	6	8	7	6	5	3	0	8	7
GAATTAGCTCATTAAG	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
GCCATGGGTTTTCCTA	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
ACTTATCCAGTGAGGG	alt_2817_RC	19	38	31	27	24	24	26	25	27	27
TGAGGAGACTTATAGG	alt_2817_RC	26	30	19	21	25	23	35	14	32	17
CAGAGGTTCGCCGGAT	alt_2817_RC	49	97	84	70	135	75	144	77	89	71
GAGCGGCCCTATTTAT	alt_2817_RC	8	3	14	7	12	11	17	6	12	8
CATGAAAGCTAATCTT	alt_2817_RC	53	60	58	36	72	48	74	48	90	49
GCCTGCTTAACTCCGT	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
ATACCCCACGTGCGTT	alt_2817_RC	22	35	23	18	43	32	43	13	34	33
ATCCCGCCGCAGTGAT	alt_2817_RC	18	41	26	32	52	25	49	32	61	25
GTTTTCTAATCTTGGT	alt_2817_RC	196	252	246	184	250	187	289	158	238	170
CTAAGAGGTACTGTAT	alt_2817_RC	12	24	20	11	24	13	19	16	27	18
GCCCTTGGTGGATAAC	alt_2817_RC	32	64	42	41	58	37	55	28	58	22
CCGTGGCTTATTCGGA	alt_2817_RC	2	11	2	4	3	3	4	1	5	2
ATAATAACTGGAGAGC	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
GCCTAGTCTTCATTAT	alt_2817_RC	18	36	25	38	31	19	39	16	36	18
TAACCGTTCGTGCTCC	alt_2817_RC	124	187	147	144	184	111	221	119	218	108
AGTTGTGTGTTGTTAT	alt_2817_RC	5	20	8	7	21	6	13	12	16	4
GCAAATGGATGGGGTC	alt_2817_RC	26	16	20	15	16	19	19	19	25	11
CTTCCAATGTACATCG	alt_2817_RC	71	74	68	52	78	53	73	51	83	56
AGTAAAAACTCAGTTT	alt_2817_RC	2	1	3	4	4	2	1	0	6	0
TCTTTATCTAGTCTTG	alt_2817_RC	12	18	9	13	19	11	19	8	12	7
GTTGACTGTAGTGCTC	alt_2817_RC	19	22	19	15	21	15	25	9	19	18
GGTTCGCACTGTATAC	alt_2817_RC	23	36	21	17	27	23	43	32	45	15
GGCATGTCATACGTAG	alt_2817_RC	100	164	121	115	173	86	191	88	171	106
CTCCCGATTTTAATGC	alt_2817_RC	11	78	29	25	84	25	64	21	70	21
TGCGACAAAAATCGTT	alt_2817_RC	44	47	38	38	61	32	76	42	83	45
TCTAGGCCACACACCT	alt_2817_RC	164	218	196	174	188	161	235	140	233	115
GTTAATCTGTAGCAAT	alt_2817_RC	71	90	86	56	83	61	97	56	88	63
AGGGTCCTGAAGTATT	alt_2817_RC	2	0	5	0	4	3	2	1	6	1
TAAGGTGATTTAGATT	alt_2817_RC	15	22	19	18	15	10	23	12	30	10
AGTCCCATAACGCCAA	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
TCGTCCGCTGGGCAAT	alt_2817_RC	78	104	99	66	81	81	99	63	134	78
AGTAAATCTCCATTGG	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
ACTAGGCAGGCCCGAG	alt_2817_RC	104	151	129	96	149	102	169	84	200	103
TGCCAAGGTAGCGTGG	alt_2817_RC	82	159	90	83	143	68	174	78	160	72
GCACGACAACAATAAC	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
TCACCCCAGATTGACA	alt_2817_RC	11	38	20	30	24	14	47	17	36	28
GGTCACGCGCGTGGCT	alt_2817_RC	23	17	33	15	42	20	24	20	25	18
CCTTGGCACAGTGGGG	alt_2817_RC	22	26	23	18	30	12	43	8	26	12
AGTCGCTACCCCCTCT	alt_2817_RC	4	25	17	13	12	12	17	15	33	10
TTCCGCTTAGTGCTGC	alt_2817_RC	0	0	0	0	0	0	0	0	0	0
TTTGAAACCGTGTTTT	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
CACATTTATTCCTGCT	alt_223_fdr	72	30	78	75	13	55	20	85	19	69
ACCGATTTTCCAATTC	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
CAATTTTTACGGTGCA	alt_223_fdr	10	10	17	13	8	18	8	15	10	13
TTGTGGTGGGGAAATG	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTACCATGGATAT	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTGCACCTTTTTA	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCAGCTTGATCTT	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
GTATAGTATAGACGGA	alt_223_fdr	325	99	374	346	96	308	133	313	116	257
GGTGTTGCCTGCCTCT	alt_223_fdr	161	73	205	193	66	158	74	185	64	144
GCGATATTAGGCGCAC	alt_223_fdr	299	113	392	304	146	252	153	307	141	268
CGCATATTAATTGTGA	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCCCGTTCAGGTA	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
CATGTTGGCTTTTACC	alt_223_fdr	319	110	376	316	99	312	128	275	98	256
TAGATCATAACCTTGT	alt_223_fdr	320	116	373	356	102	306	142	299	92	265
CAGACTTTTTTGCGCT	alt_223_fdr	22	8	41	18	11	21	6	18	13	23
ACTAGATGTGTTGCAC	ref_223_fdr	477	163	540	462	200	407	200	411	185	358
AATCTAGTTCGTCCGT	alt_223_fdr	23	6	31	25	4	28	20	29	12	23
TAAGGTACGGACGCGC	alt_223_fdr	64	18	54	30	21	47	17	27	18	34
AAAACGACACTATCGA	alt_223_fdr	1	0	3	2	2	2	0	2	0	1
ACGCTGTTTAAATATC	alt_223_fdr	209	85	247	207	72	153	98	170	83	146
CTGCCGACTATTGATT	alt_223_fdr	192	84	196	175	84	146	82	168	90	125
TTAGGTGAACGGGACA	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
GAGAACTGAAATTCTT	alt_223_fdr	18	11	28	23	8	18	4	22	12	25
TGAGTTATTGAAATTC	alt_223_fdr	72	30	81	83	22	72	28	92	31	71
CGCGGGGTCCTACCTG	alt_223_fdr	25	9	19	31	13	29	6	23	16	35
ACACAGAAAAACCAGG	alt_223_fdr	48	30	75	55	9	35	15	41	17	48
CTGGGGATATGCTTGA	alt_223_fdr	288	84	348	285	107	299	118	253	123	256
GCTGAATTTTCTCTTC	alt_223_fdr	226	54	280	270	75	249	84	247	83	221
CCAGCCTTTCTGGACA	alt_223_fdr	2	12	5	5	28	10	26	6	28	5
TTACATTCTATTATCT	alt_223_fdr	679	199	828	705	233	649	228	649	240	593
AGAGACCTGGTTTGGA	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCCAGATTGTTCG	alt_223_fdr	168	104	222	206	86	195	85	184	88	170
CATTAACTTTGTCCTT	alt_223_fdr	50	9	47	39	17	30	11	27	12	43
AAAAGTAGAGCCTATA	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCTAATGTACGA	alt_223_fdr	114	37	165	133	42	127	47	121	44	127
CATAGAATTCGGCGCT	alt_223_fdr	96	35	141	123	47	109	46	96	34	99
GAAGTACGACAATAGC	alt_223_fdr	97	35	135	137	33	89	41	78	36	86
CCTGACCAGACATTGT	alt_223_fdr	94	73	106	83	63	73	67	97	73	76
TTGTGGGCTATGGAGC	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
ATATGGCTTCGAGTGC	alt_223_fdr	1	0	3	1	0	0	0	2	1	1
GCTGTCAGATCTGTGC	alt_223_fdr	40	57	34	38	72	29	48	43	65	25
ATGCTTTTCACGTTAG	ref_223_fdr	109	72	146	136	80	118	96	105	97	98
CGGCAAAGTTGCATAT	alt_223_fdr	10	5	8	18	5	14	7	9	5	7
GGTGCACGGTCGTAGA	alt_223_fdr	466	142	556	478	154	424	179	456	153	431
CCTCTGGCCTCCCTGT	alt_223_fdr	220	74	253	284	80	209	99	202	99	205
CGGGATCTCATGGGGT	alt_223_fdr	40	48	140	135	36	114	36	130	43	72
GCGTAAGATGTTTCGC	alt_223_fdr	176	65	204	196	62	175	50	175	59	136
CCGTTCAGCGTAAGAC	alt_223_fdr	0	0	0	0	0	0	0	0	0	0
CCAAGTGATTTTGCCA	ref_223_fdr	1	2	2	1	3	2	7	5	5	2
TCTGACGTCTATTTGT	alt_223_fdr	9	6	12	14	0	6	3	12	6	12
TGTACATGACGGCTTG	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGCTGTCATGTGG	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
GATGTTTCTCGTATGG	alt_3022_fdr	28	18	48	32	27	32	19	30	10	27
GTTCAGTTTCATGGCA	alt_3022_fdr	33	28	42	34	40	42	34	38	24	39
CGGGACATAGATATGC	alt_3022_fdr	3	5	5	3	16	0	14	0	13	1
GGGCTGCAGCACCTGC	alt_3022_fdr	44	24	48	44	36	47	28	39	18	30
TGCTTTTCTGCACTTA	alt_3022_fdr	122	73	163	114	70	83	65	80	79	91
GGATTTGGCACTGACG	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTGTAAGTTTCAT	alt_3022_fdr	18	16	13	19	7	11	12	11	9	5
ATGTATAGCATTGAGC	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGATGTGGTAACG	alt_3022_fdr	11	12	23	29	6	20	13	21	10	15
CCACGAACTCGCACGT	alt_3022_fdr	3	3	6	9	2	6	2	3	7	3
AGCCTACGCCTGTATA	alt_3022_fdr	1	0	0	0	0	0	0	0	0	0
CCAGGCCAACATTCCG	alt_3022_fdr	4	8	11	10	10	11	9	3	8	7
ATAAGTCAGTTTGAGC	alt_3022_fdr	76	52	105	77	71	94	68	79	74	71
CGTGTTTTAGAAGGTA	alt_3022_fdr	48	25	37	50	32	31	21	44	31	34
AGCCAACGCCTGTATA	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
AGGAATATAAGTCTGT	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
TCATGACTGAATACGA	alt_3022_fdr	12	7	6	9	8	8	14	8	8	18
GTCAGCTAGCAGGATT	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
GAACCACTTGCTAAGT	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
ACTAAACCATAAAGTT	alt_3022_fdr	31	24	33	25	17	20	19	26	14	30
TATCTCCGCGGGCATG	alt_3022_fdr	42	36	42	45	39	51	23	43	31	42
CCTTGATCCCGACGCT	alt_3022_fdr	72	52	94	88	72	77	75	65	75	78
AATCGGCCGGACTGCC	alt_3022_fdr	1	9	3	4	6	4	6	3	4	1
ACCCGGATTCGACTCT	alt_3022_fdr	92	141	104	72	147	77	138	73	170	67
TTTCCCGAGAACAGTT	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
ATATCTTTAAGACATT	alt_3022_fdr	7	2	7	9	0	4	1	2	4	3
CAACATGGTCCGGCTT	alt_3022_fdr	15	8	25	13	13	17	13	19	11	18
TGTTGAAGAAATTTCG	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
CATCAAATATATTTGC	alt_3022_fdr	38	36	57	46	29	46	34	34	52	31
CTATTTCGTGTTGGAG	alt_3022_fdr	10	6	18	20	4	18	10	17	4	13
AGTCAGCTTAACACCA	alt_3022_fdr	211	152	212	222	142	178	138	134	148	164
TTGCGATCATAGTCTT	alt_3022_fdr	47	37	73	44	30	39	47	63	42	37
GTAAGCTGGCGGGGGC	alt_3022_fdr	31	8	39	21	20	27	23	12	22	28
AGGACTCGCTCTCTCC	alt_3022_fdr	10	10	15	16	9	11	9	11	11	8
GCCCCCTGGGTTACTT	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTAAGGAGGCAGC	alt_3022_fdr	31	37	74	54	38	47	33	38	45	44
AAGTATTTATTACTGG	alt_3022_fdr	90	62	139	110	66	101	66	91	56	95
AGTTATGTTAGGGTTT	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
ATTATGGCTGTACGGG	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
TTGGATTCTTGCCCAC	alt_3022_fdr	7	6	4	7	13	5	2	10	3	5
CGCAGATTTGGATGAG	alt_3022_fdr	27	28	38	17	28	32	19	23	17	29
CGCCCCGGGCTCTCTT	alt_3022_fdr	40	19	49	44	17	39	23	38	26	22
GGAGATCACTTTAATA	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTCCGCTACCGAG	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
AGACCTCAAGCAGCAT	alt_3022_fdr	122	78	142	138	102	123	106	153	80	125
CAGCTGAATGTCGCTC	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
TTACTCGCCTGGAGTT	alt_3022_fdr	27	16	35	22	25	20	6	30	17	22
TAGTACGCTGTTCGTA	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGTCAGTTTCTCG	alt_3022_fdr	11	7	13	21	7	11	11	22	13	6
GCCATATGTATGTATT	alt_3022_fdr	0	0	0	0	0	0	0	0	0	0
CCATATAGCGGTTACG	alt_3022_fdr	1	5	3	2	0	1	1	1	2	4
TTAGCAGCGCGCTGAG	alt_671_upstream	5	3	2	3	1	2	1	2	1	4
CGCGCGGGGACGACAT	alt_671_upstream	44	37	57	61	35	55	41	71	27	35
ATGAACTCTGATTCGT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGCTCTAACACAG	alt_671_upstream	106	107	84	94	105	83	108	89	86	84
CGCAAACCCCGCCTGA	alt_671_upstream	6	10	11	16	23	12	17	9	18	11
TGGCCGCCCTAGCTAC	alt_671_upstream	56	41	59	46	44	57	49	45	33	37
CGTTACATGTTGGACC	alt_671_upstream	67	65	108	74	68	74	90	66	80	73
TATTGTTAGCCATTAG	alt_671_upstream	48	43	67	51	39	60	38	33	56	36
AAACTCAGGCCACTCT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TTAAGTACTCCTCCCT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCGGTACGATGT	alt_671_upstream	26	39	36	24	33	38	53	34	37	22
CTCAGCACAAACTACC	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGACCTATTGCTC	alt_671_upstream	37	32	54	31	29	27	38	32	31	31
CAGACCTGAGGCGAGG	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGAGTCACACAAA	alt_671_upstream	5	14	21	7	8	13	10	10	12	13
GTCACATCCTCAAGTT	alt_671_upstream	12	11	13	22	20	19	16	9	17	17
GTCAGCATTGTCTCAG	alt_671_upstream	6	11	8	9	17	14	14	9	9	9
TGTATACGAGTATTTC	alt_671_upstream	31	31	39	26	35	33	25	29	38	25
CAAATAGTGCTAGATA	alt_671_upstream	12	7	8	11	9	12	9	7	9	6
CCTGTCAGAACACCTT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGGCAATGTGTGC	alt_671_upstream	0	2	4	0	4	2	0	0	0	1
TTGGGTAGGCACTCCC	alt_671_upstream	1	1	0	1	6	3	0	1	1	0
CGCCCCTATTATTGGG	alt_671_upstream	29	23	41	29	30	26	24	30	27	21
CCAGATTCCTTTACAA	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
AGTATCCTTGTGTGCG	alt_671_upstream	20	17	18	20	26	16	26	19	34	17
ACACTCGCTCATGCAT	alt_671_upstream	34	80	36	35	73	35	87	32	112	44
CGTAACCGTATGACAT	alt_671_upstream	41	34	47	41	28	39	29	41	37	30
CTATCGGTTTATCAGC	alt_671_upstream	15	10	19	13	11	12	20	14	20	11
TGTTTAATCCCGCGCA	alt_671_upstream	19	17	29	18	20	17	23	21	17	20
TTACTCGTTTTTCACC	alt_671_upstream	15	11	22	18	8	8	11	10	6	14
AGCGCCTTGCCTTGGT	alt_671_upstream	26	24	45	41	25	35	33	36	21	22
GAGTTTAAGCATTTCA	alt_671_upstream	7	6	13	12	7	8	8	4	13	5
GCTGGGGGGGTCATGC	alt_671_upstream	62	48	76	52	53	51	41	55	54	48
AAGGAGAGGGACGAGC	alt_671_upstream	252	267	343	287	243	298	264	252	281	248
AGATCGATGCTGCCTT	alt_671_upstream	25	36	29	26	37	24	40	22	47	35
TGATCCATGTCCTCAT	alt_671_upstream	44	33	49	55	29	48	49	46	53	31
TGGTGTTCTCATCACA	alt_671_upstream	105	75	137	80	92	104	92	79	97	74
TACACGCCTATGGGAA	alt_671_upstream	5	11	11	8	13	7	14	11	11	9
CGAGTTTCGATGAGGG	alt_671_upstream	112	44	100	86	68	103	72	87	74	70
TTGAGAGATCTCATAT	alt_671_upstream	18	11	19	20	6	17	17	13	12	9
CACCGTGCGTCGTAGT	alt_671_upstream	38	14	35	31	28	32	32	28	46	28
AATGGTCCTGTAGCTA	alt_671_upstream	45	33	33	35	17	48	32	32	24	32
TGCTGCCAGATGCATT	alt_671_upstream	33	12	22	24	28	18	17	18	29	32
CTAGGCTTCACTGATA	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
CACATTTTCTGATCAC	alt_671_upstream	30	20	45	23	18	30	21	26	19	13
CTGCCGGTAATCGGGG	alt_671_upstream	110	92	138	120	114	88	94	103	73	117
GCCGCGGCGGGTGCCA	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
ATACCTCCTACAACGT	alt_671_upstream	90	86	133	110	87	91	105	111	116	109
CTCAGTCCTCCAACCT	alt_671_upstream	12	20	10	3	35	7	21	17	32	8
ACGAACGCAGTGATTT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGCATTTCAGTTT	alt_671_upstream	77	55	107	57	66	59	93	65	70	62
TTGAAATCAGGCGCTA	alt_671_upstream	8	13	19	14	15	15	12	19	15	13
TCCTTACATAAGTCGG	alt_671_upstream	33	31	33	28	28	32	31	41	25	29
CCGACCTACGTTTCGC	alt_671_upstream	7	19	9	9	17	11	28	8	23	13
GTGACCCCGTCGCGGC	alt_671_upstream	21	46	27	28	59	23	55	27	51	27
GCTGTACACGACATGC	alt_671_upstream	6	3	7	4	6	11	0	4	6	2
GATTCGCATTATGCGG	alt_671_upstream	5	16	6	5	0	7	7	7	8	7
CTTGATCTAATAATGG	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCGTGACTTCTTC	alt_671_upstream	59	35	78	38	38	49	43	32	37	47
GGTGGGTAACAGCGTA	alt_671_upstream	8	11	20	10	15	12	14	17	6	14
ACTCTTTTGGCCGGAT	alt_671_upstream	20	17	25	13	19	22	20	21	23	19
AGACGTGTACTGGCAG	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGTAAGTTTCTCG	alt_671_upstream	19	15	29	22	20	11	21	9	21	20
TTTACAATGTCTCAGT	alt_671_upstream	57	43	78	67	49	56	50	62	55	61
TCAACATGCTTTCGCC	alt_671_upstream	42	35	53	33	42	40	59	35	40	48
GGATTAACGTCTAGGT	alt_671_upstream	91	72	92	70	69	75	81	75	85	52
GATGTTGCCCACACGG	alt_671_upstream	118	117	150	125	129	120	105	121	107	142
TATCTGTCTCGACGGT	alt_671_upstream	49	49	80	52	35	63	46	45	62	50
GGTGCAAGTGTAACGG	alt_671_upstream	21	8	13	16	17	16	9	13	16	10
TGTATGTCCTTGCGCC	alt_671_upstream	45	31	38	34	45	37	45	30	43	43
TTATGCTACCGTTTGG	alt_671_upstream	10	24	8	9	16	13	16	11	22	4
CTGCCGAGATTTCAAT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCAAGGCTACAGT	alt_671_upstream	104	93	131	106	107	123	111	85	94	98
TGAACTGGTGCCTAGA	alt_671_upstream	31	39	40	62	37	50	37	45	40	53
ATTAACGTGGACCCGT	alt_671_upstream	8	4	8	3	6	13	9	5	9	14
AGACTTCTCGTACCGC	alt_671_upstream	14	14	25	17	12	22	16	11	21	21
TATAGATCCAACACTA	alt_671_upstream	119	96	118	121	86	112	96	105	103	89
CCCTCTCTGTTTTCCG	alt_671_upstream	61	70	72	60	61	58	57	67	71	35
CTTGATGCTCTTTTTT	alt_671_upstream	196	143	225	159	165	171	159	178	162	166
GGACTGTTGTCAAGTC	alt_671_upstream	84	80	103	92	83	99	89	86	95	68
CATTATGCACCCGTGA	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTGCTTTGGGTC	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
AGAGTTTCGATGAGGG	alt_671_upstream	0	0	0	0	0	0	0	0	0	1
CATACTTTTGATATCT	alt_671_upstream	44	29	31	20	26	29	27	22	30	19
CGTTTTATCATGAATT	alt_671_upstream	1	0	0	0	1	0	1	1	0	0
TAGTAGTCAGTCGCGA	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
CGCACTCTCTGATTGG	alt_671_upstream	188	196	237	228	213	198	206	166	211	170
GCATAGCGAATTTCCG	alt_671_upstream	20	15	20	8	11	18	14	16	24	18
GACACATTGTGATCTT	alt_671_upstream	83	74	79	101	56	62	89	71	65	57
TGCCGTCGATTTTACG	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
CGTATAGAACTGCACG	alt_671_upstream	37	39	56	36	34	51	51	39	42	36
TTTACCACGCTTACTC	alt_671_upstream	69	50	75	86	66	65	78	61	79	78
TGATGCTTCGTGTTAT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TACTTATGCAGTAATA	alt_671_upstream	35	25	42	33	41	24	28	32	36	24
ATCCCCCCTGTTGCTT	alt_671_upstream	32	25	29	27	23	15	19	28	24	24
TGTTGCTGACCTACAG	alt_671_upstream	73	87	79	67	84	66	91	60	82	58
AAGGAGAGTGACGAGC	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
CGCCATCGGACATTTT	alt_671_upstream	19	59	28	18	65	14	51	19	53	22
CATGAAGCCTGAGCGG	alt_671_upstream	154	134	191	144	121	160	131	137	138	140
TCCTATGGTGTGTACC	alt_671_upstream	10	5	10	9	7	7	10	7	2	5
GCCAAGATCTTATTTC	alt_671_upstream	16	21	30	34	24	25	21	22	20	16
GATCCCCTGGTTATGC	alt_671_upstream	15	14	12	7	13	10	17	8	12	11
TCCGGTCGTTGCCAGG	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TTGCACGCCCGTATAT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTCTATCCTAGGC	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
GCTCATCGCCTTATGG	alt_671_upstream	15	28	11	15	9	25	9	20	14	11
GACTCTGCAGATCCAT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TGAATCTAACGGTTCA	alt_671_upstream	33	18	39	30	28	36	22	38	35	24
GTTGCTGCGAACCGGA	alt_671_upstream	11	4	11	9	11	9	3	9	5	15
ATGATACTCTGAGCCT	alt_671_upstream	42	41	48	28	30	42	39	32	38	33
TCTGTGCCGCGTTGGA	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGCTTATTGAAA	alt_671_upstream	29	36	36	31	31	45	40	28	53	27
CTTTCCGACCGTTAAC	alt_671_upstream	2	14	3	4	14	6	12	2	8	4
CGGGTACTCGGACGTA	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
ACAAGGCGAATAACGC	alt_671_upstream	6	11	16	7	10	13	3	5	10	10
ATGACACACTCATTGC	alt_671_upstream	2	7	11	5	12	3	9	4	17	5
GACATCGACTCCGCGC	alt_671_upstream	54	30	57	52	32	39	40	33	42	40
CGTCTTGGGTTAAGGA	alt_671_upstream	134	106	127	103	87	129	102	106	88	103
TATAGAATTGCGGTAC	alt_671_upstream	30	21	40	26	22	30	23	21	20	26
GATAGGTTTCCGTACC	alt_671_upstream	18	5	20	13	12	15	9	18	12	8
GAGGTGATTTACCTGA	alt_671_upstream	35	55	44	35	34	24	41	29	25	38
ACTTGGACGGGTTTTT	alt_671_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTGCGAGTGACTG	alt_671_upstream	37	26	38	34	32	35	37	21	45	28
ATGCCATTTATGTGGG	alt_671_upstream	44	37	65	45	68	49	50	54	46	40
ATATATGATTGGGCGG	alt_671_upstream	9	8	11	12	13	17	13	16	13	10
GATTAAATATAGGTGG	alt_671_upstream	30	17	27	34	20	28	23	18	24	20
AGGTCTTGTTCTGATG	ref_1403_negative	17	37	18	21	41	16	51	17	35	21
GCCTCCCATTCATGAC	ref_1403_negative	6	18	7	6	7	2	15	11	16	3
GATTTGCGATGCCCTG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GTTATGGTTCACCAGT	ref_1403_negative	16	20	16	11	17	15	15	12	15	11
CCATTGCGAATTGGTT	ref_1403_negative	9	13	7	6	6	2	7	2	8	13
TTCCGTCCCTTTACTA	ref_1403_negative	5	6	7	6	11	4	6	3	11	3
TAGCACAATTGCATGC	ref_1403_negative	15	19	10	14	27	13	20	13	17	7
TCGTCGTATTATCAAT	ref_1403_negative	5	20	9	11	16	8	14	5	19	7
CTTACACCTACCATTG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TCGAAGGTCTAGGGTT	ref_1403_negative	12	28	18	18	36	17	30	23	29	13
TTAACCAATAAGCAAT	ref_1403_negative	2	16	4	9	8	2	12	1	12	5
AAATATGTTCAGCTCT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GGATACGTGATTCGCA	ref_1403_negative	38	61	49	35	82	37	68	44	67	35
AGGAAGTCTCCGAGTA	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
CGCAAGAACTGATCAA	ref_1403_negative	8	11	11	5	7	8	8	4	15	5
CGGCGGCGGGTTTGCT	ref_1403_negative	32	77	29	31	83	32	82	28	82	22
AAAGTCCCGGAAATTA	ref_1403_negative	45	49	50	37	49	24	53	38	51	24
TGTTGGGGCTGGGCAC	ref_1403_negative	14	42	11	30	32	20	63	26	39	22
GCACAGGTCTTGGCGT	ref_1403_negative	8	33	17	14	25	19	29	18	21	13
GTGGCCCCCAATGGTG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TGTTATCTCTTCTGGG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GCCGTAGTCTTTGTAG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GTGGCTTTAGTGTTGG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TACAGTTAGATCCGGT	ref_1403_negative	0	4	1	3	6	2	2	1	3	5
ATGCTTTTTGCATGAA	ref_1403_negative	2	7	4	2	5	2	6	2	4	2
TCAACGGTGCGAATAC	ref_1403_negative	3	8	6	11	6	3	15	4	5	8
ATGCACTCCGTCAAAT	ref_1403_negative	113	154	97	86	208	83	197	84	226	74
GTGCAAGGATAGGTGC	ref_1403_negative	25	33	20	20	34	17	39	14	34	17
TGTGGAGCAAGTTACC	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
CAATTTTTATATCCTC	ref_1403_negative	29	24	31	31	37	30	34	26	37	18
ATTCTAGAAGTTCACT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GAACTGTTACATGGAC	ref_1403_negative	25	48	43	27	48	37	38	32	48	39
GACATTGCCAGCTACG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GGATTGCCTGCTAGGA	ref_1403_negative	13	27	15	12	16	14	18	9	15	3
CTTAGTATATTATAAT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GTCTGCAGTAATGTTT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TTGTACAGGCGGAATC	ref_1403_negative	8	12	12	9	11	6	10	10	9	9
CCTCTGATTCAGTGTC	ref_1403_negative	36	98	23	44	74	22	86	24	98	20
TTACGGCGCAATACCG	ref_1403_negative	13	25	23	20	35	11	41	18	26	13
AATTATGATTTGAGTG	ref_1403_negative	4	15	6	3	6	11	16	4	20	6
GTGCTCACGTGTTACA	ref_1403_negative	30	42	20	34	48	22	38	22	48	25
ATTAGGGCGAACTTTT	ref_1403_negative	28	33	34	26	38	15	32	24	39	20
ACTCCTACTGAGAACG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TCGCGACTAAGATAGC	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
CTGTCCTGGCGGAACC	ref_1403_negative	107	151	96	77	175	92	192	102	156	91
CAAAGTTCCGCATTCG	ref_1403_negative	18	48	24	21	40	23	35	10	35	15
TTTTTAAGAAATTAAA	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GTTGTTGCATGTAGTG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TATTGTCACACATCTG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TCGGCGAATAGGGTAA	ref_1403_negative	16	24	25	16	25	18	21	9	31	21
TTTATGGATATTCTCT	ref_1403_negative	11	11	5	8	14	4	20	7	21	4
GTGCTAACCATATCCT	ref_1403_negative	13	18	20	10	23	5	30	7	17	10
GATAGGAAATGGTCTG	ref_1403_negative	14	14	13	16	17	7	8	9	24	7
CTAGCTTGCTCGTTCT	ref_1403_negative	3	7	8	9	11	6	6	4	8	5
GATTTATTAATCGTGA	ref_1403_negative	8	22	20	11	28	12	29	20	14	8
ATAGCGCGGGGGTGGC	ref_1403_negative	53	84	70	61	81	54	57	48	69	42
CATTTCTCGCTCTTCC	ref_1403_negative	15	16	15	17	19	22	9	13	24	7
CTCTTTGGACCTATAC	ref_1403_negative	1	5	3	5	7	4	9	3	12	4
CATTTAGCTCCGCTCA	ref_1403_negative	71	118	75	83	106	80	129	72	130	69
AATTCGGAAGATTGCG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
AATTCGGAGGTCAGTC	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GCTTTCGAGCTCAAGC	ref_1403_negative	0	0	0	0	1	0	0	0	0	0
ACGTCTATCTTGGACA	ref_1403_negative	7	15	14	10	8	4	19	9	19	8
CACAGGTGTGCTCGCG	ref_1403_negative	16	16	16	9	38	8	27	14	27	7
CACGTTGCCGTCAGAT	ref_1403_negative	17	38	24	20	39	22	36	27	44	16
TTTACAACTTGGCCCG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TATGTGCTTCCGACCT	ref_1403_negative	15	31	21	13	32	15	28	15	22	12
GGTATATATGATCCTT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
AGCGCCACTTTAGCAC	ref_1403_negative	2	4	1	1	1	1	1	0	2	2
TTCGGTCTCACCTGAG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
CAGCTCCCTTGCTAAC	ref_1403_negative	8	19	7	3	21	5	15	4	24	7
GCTTTAATGTTAGTCA	ref_1403_negative	24	28	21	14	14	13	43	12	18	13
GCCCTGCTTCGTGCCA	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TGGATTTGAGCGCGCT	ref_1403_negative	4	7	5	0	2	1	2	1	3	3
GATGGTATAACAAATT	ref_1403_negative	7	15	7	9	11	8	11	9	15	11
TGTTCTATTATTTAAA	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
TGAGCGACTGTGTCAT	ref_1403_negative	6	10	8	7	4	4	11	6	14	6
TGTCTGAGTACATTCG	ref_1403_negative	2	1	3	1	1	0	0	0	4	1
CGTGGGTACTAATTGG	ref_1403_negative	5	15	6	2	14	2	11	6	15	10
GTATGGCTATATTTTT	ref_1403_negative	59	74	60	62	82	52	87	39	80	43
ACAGTAATTAGAATGT	ref_1403_negative	3	5	4	7	5	4	4	3	8	2
GCAGTCCCAAAGATGT	ref_1403_negative	0	1	0	0	0	0	0	0	0	0
GTGTGTTATTCCTTAG	ref_1403_negative	4	15	7	10	8	4	8	5	7	7
CTTGGACTTTGTTCTT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GGAGCCGTATATGATG	ref_1403_negative	2	8	7	1	6	0	6	3	5	0
TTTCGGGGGGTTCATG	ref_1403_negative	26	55	38	35	41	32	59	37	46	22
GTAGAAGCATTTATGG	ref_1403_negative	8	12	15	13	13	9	18	5	20	8
TGTCCAGGACGTCTAA	ref_1403_negative	102	196	115	118	142	83	157	77	188	87
GTTAGACGGGCACCGT	ref_1403_negative	6	16	12	11	16	6	19	6	15	11
TTTTGTGTACCTTAAA	ref_1403_negative	25	52	27	28	44	27	54	29	71	19
TTGCTTCTGAAGCTCT	ref_1403_negative	8	20	10	18	23	11	27	9	27	12
ACGGAGTGAGAAAGTT	ref_1403_negative	42	95	46	40	78	38	60	49	80	39
CGTTCCCCTTTTTAAC	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GTTCGGCCTAATTAGC	ref_1403_negative	4	9	10	7	15	5	6	5	8	3
CATTCGACGGGTCATA	ref_1403_negative	21	44	16	12	38	20	29	13	25	17
CGATGTGTAACAGTTC	ref_1403_negative	1	6	3	4	4	6	6	3	6	4
TGTATTTAGTTATTCT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GCCAATTTGACCACCG	ref_1403_negative	1	5	4	2	3	3	5	2	5	2
GGCATTTTTTTACAAA	ref_1403_negative	16	33	23	15	27	14	24	14	29	14
CCCGCACTATTCGCGC	ref_1403_negative	3	6	3	6	9	2	13	6	13	9
TCAACGTGCCACCGTT	ref_1403_negative	0	1	0	0	0	0	0	0	0	0
AGTACGTGTACGTATG	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
AAGAGTTACCGGTCTT	ref_1403_negative	0	0	0	0	0	0	0	0	0	0
GATAGGGCGCGGACTC	ref_5972_new	2	9	7	6	9	5	16	8	15	5
TTCAGGCGAGTTTGTC	ref_5972_new	61	140	81	67	140	72	156	96	143	51
ACCTTCTACGTCCTGT	ref_5972_new	7	26	7	9	25	11	18	5	24	8
CGTGTTTGTTTCGTAA	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CCAGTCCTTAAGCTGT	ref_5972_new	2	16	6	5	14	2	7	2	17	3
CGCACCGGATCAGTTG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TCCGTTGTCAATGTGG	ref_5972_new	7	23	15	7	24	7	27	8	26	13
TACGTCTCCGTCTCTC	ref_5972_new	21	35	23	28	33	14	33	20	33	15
AATGTCAATCTGACCT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CACCAGTTTACGTCCT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TTTCAGGGGTCCAATG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GCGGTATGGCGCCGGT	ref_5972_new	27	32	31	25	42	18	42	25	50	24
CTATTGAGGCATGACT	ref_5972_new	25	21	20	11	33	15	32	20	36	13
CAGTGTACTAGGGCCA	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CATGGATCCTTTCATT	ref_5972_new	3	14	4	5	11	5	12	1	6	1
GTGGTCCCTTGTAGGC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TAAACTGATATGCCTC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TGGATGGAGCACATAT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GGTAGTAATTAGTTAG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GACACGATTCTTGCGA	ref_5972_new	13	17	11	7	15	10	13	3	21	13
GGCCGTGATACCTCTT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CCATATTGTCTTAGTA	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CACTGCTTGCATGCGT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GCTACACTATTTTCGC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TAGCGATGTTCGAAGG	ref_5972_new	9	8	5	7	15	8	19	13	17	13
GATGGACGCCATTCTA	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CGCCCTTGTTTGCCGG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TAATTTTTGCCGTCGC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
ACGGCTTACTGTTTAG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GTGTCTTGGATCTAAA	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TCTATTCCTTCCCGGT	ref_5972_new	9	13	14	18	17	12	26	9	15	5
GTTCCAATTGCTAAGC	ref_5972_new	31	55	59	42	80	26	78	29	74	31
TGTAGGTGCTCATACG	ref_5972_new	5	20	10	10	14	13	12	6	17	5
ACAATGGTCCTCTAAT	ref_5972_new	0	1	0	0	1	0	0	0	6	1
GGTCAGGCAACCGGTG	ref_5972_new	4	3	2	0	3	2	3	1	5	5
CGTTTGCGCTTGTTAA	ref_5972_new	0	0	0	0	0	0	0	0	0	0
AACTTCATCTGTGAGT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TCTTACTTGGTTCAGC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GTCCTCCTCCACAAAG	ref_5972_new	18	39	24	16	47	19	51	18	40	11
CCCTTGTTCTACCGCC	ref_5972_new	1	4	2	2	0	0	2	1	2	0
CATAAGCTACGTAGGG	ref_5972_new	14	12	17	6	36	12	23	6	17	9
TTAAGTGGATAGTATA	ref_5972_new	25	41	19	22	33	18	50	15	49	6
GCAGGGTGTGCACTCG	ref_5972_new	5	11	5	6	20	2	8	2	19	6
TTTCAGACCTTCCTCC	ref_5972_new	21	31	18	13	38	18	36	21	25	16
TGGCCGTAGGCCGTAA	ref_5972_new	11	22	12	9	20	7	24	7	35	11
CGGTTTTCGCGCAGCC	ref_5972_new	10	9	15	6	15	6	6	6	11	2
CTACAGGCACTTTATT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
AGAAGTAGTGGCTGAG	ref_5972_new	11	27	9	11	14	12	27	11	22	7
GTATCATGTGGTCGAT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GGATATCACGAAAGGT	ref_5972_new	16	25	9	11	11	14	22	15	22	9
CGTATCTTTTGGGTAG	ref_5972_new	13	38	17	18	35	10	50	11	31	20
GAGCAGGATTTTTTTA	ref_5972_new	2	6	2	2	4	1	1	0	6	1
GACTCCCATAGGCTGT	ref_5972_new	5	4	4	2	4	4	10	2	14	1
GTTTACCAGAGGTGCC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CACGATGGATAGGGGG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GCCTCGCTGTAGAAAG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
TGTCTCAGACGTTATG	ref_5972_new	9	18	20	7	19	10	26	6	17	12
GCTAGTCCCCATAGGT	ref_5972_new	5	9	5	8	16	4	9	6	16	6
ACAGTTTTGCCCCCTG	ref_5972_new	5	6	1	3	3	4	4	8	10	3
GTTTGGAATTTTAAAA	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CCTAATATGGGATGAT	ref_5972_new	0	0	0	0	0	0	0	0	0	0
CCTTATTTTCTCATCG	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GGCCAAGTTCGCACTC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
GTATCTAGTCCGTACA	ref_5972_new	5	21	9	9	10	11	29	4	17	8
ATTCAGGTCTCGTGCC	ref_5972_new	0	0	0	0	0	0	0	0	0	0
ACGTTACCGCCGGATA	ref_5972_new	32	59	32	44	62	26	49	44	57	28
ATGCTTCCTCGCATGT	ref_5972_new	34	37	28	21	35	17	47	24	47	19
CTCCGCGTATGACTGG	alt_1700_upstream	10	19	11	11	7	6	23	9	9	13
TATTATGTTTATGAGA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAAGCCAGTCTTT	alt_1700_upstream	79	72	97	74	61	66	87	91	79	63
TGCCAAAGCTTAATGC	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GACCCTTGTTTCTTTC	alt_1700_upstream	74	35	80	62	69	64	64	74	74	52
ATTATGGTTATCAATA	alt_1700_upstream	50	43	70	43	38	36	41	50	45	48
CTTGCTATTGGAAATC	alt_1700_upstream	1	0	5	4	7	4	1	2	1	6
TGAAGCATCTATCGAG	alt_1700_upstream	48	41	69	30	30	42	29	44	43	43
CACGCATCCACAACGT	alt_1700_upstream	31	29	39	29	31	26	20	30	21	22
TAGGGTATGGTATGAT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
ATGACTTCCAACCCTG	alt_1700_upstream	82	62	111	111	74	99	74	92	77	78
CACCCACATGTCACAT	alt_1700_upstream	1	11	4	2	4	7	6	5	8	2
CGAGCAGGATACAGTG	alt_1700_upstream	88	66	84	83	69	71	71	71	71	70
GCCGGTGCCCCGAGAT	alt_1700_upstream	1	7	2	1	3	5	5	7	2	2
CAGGGGGTGAAAACCA	alt_1700_upstream	15	14	19	17	18	19	9	22	19	15
TTATAATGTCTAACAT	alt_1700_upstream	12	13	17	13	14	20	33	24	20	6
GGTCTGTGTTAGTGGG	alt_1700_upstream	5	6	10	10	6	4	4	5	5	7
TCTGAACGGGCGCCCG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGCATTTTTAATGTTT	alt_1700_upstream	12	4	21	11	7	6	10	12	5	1
CGGCTCTCTGCGGATT	alt_1700_upstream	59	46	54	45	60	49	50	44	52	49
GTATTAACTTGGAGTT	alt_1700_upstream	89	68	98	74	54	61	75	73	86	74
CCATTTTTGCATCCCA	alt_1700_upstream	36	28	42	28	20	34	26	37	25	23
AACTTATAGCTCGGAA	alt_1700_upstream	15	25	44	23	13	19	20	13	19	13
TATTTGTCCCGTAAGA	alt_1700_upstream	0	1	0	0	0	0	0	0	0	0
ATTGGGCTCGCGAGTT	alt_1700_upstream	17	23	22	33	14	21	20	17	15	17
TACGACGGGTGAAATC	alt_1700_upstream	31	34	53	39	24	39	29	37	26	36
CCCTCTGTCTCTTTGC	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
ACAACGTTTTATAATT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGTCCTCCAGATT	alt_1700_upstream	55	27	57	39	37	32	39	40	24	43
ATCCCTAGACCGTATA	alt_1700_upstream	16	13	8	9	9	8	13	9	6	9
AAACGATATAGAAAGT	alt_1700_upstream	62	67	106	104	58	75	70	70	76	66
TATTTTGTCAGGAGAC	alt_1700_upstream	34	16	45	32	26	43	45	31	29	36
CTAGTAGTACATCGAA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTGAGTTGTTGGTAGA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTGCAAGTCACCA	alt_1700_upstream	0	3	2	0	2	0	0	0	0	0
TGAGTCATTAGTAAAG	alt_1700_upstream	3	0	2	2	2	4	5	2	2	5
CTTTGTAATACATCGG	alt_1700_upstream	32	25	63	42	28	29	30	24	31	34
TGGGATCCGAGAAAGC	alt_1700_upstream	68	53	60	54	46	45	49	61	38	52
TTCTGCCTCTGTGTTT	alt_1700_upstream	139	148	243	177	144	176	198	189	180	160
GTCAATTTAACGCGTA	alt_1700_upstream	9	7	8	9	5	14	5	8	14	6
GTGTTGCATAACCAGA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CCTATTGGTTTTGGAC	alt_1700_upstream	18	40	26	21	46	19	42	17	41	12
TCATTATCGGCTTCCT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGCCTTGTTAAAA	alt_1700_upstream	3	12	11	8	7	6	10	7	11	4
TCGTTTATTGCCGTGG	alt_1700_upstream	82	80	85	90	80	68	70	76	95	60
CTAAGATTATTGTACT	alt_1700_upstream	19	29	16	25	26	27	29	34	28	20
ATCGGTATTTAATGTA	alt_1700_upstream	61	52	92	75	53	63	75	73	62	50
ACATCAGACTCTGGTC	alt_1700_upstream	4	5	4	4	7	0	3	3	3	4
TACTTTCTAAGCGATT	alt_1700_upstream	22	18	35	23	25	10	26	21	34	27
CGGCAACTGAAACCTT	alt_1700_upstream	11	10	10	11	8	12	15	6	8	8
CGTTGGTTGTTAGTCC	alt_1700_upstream	130	91	144	124	93	110	120	112	89	89
TATATCTAGGTAGGGA	alt_1700_upstream	44	65	92	78	56	83	72	70	57	54
CGTATTTAGTGGCCAT	alt_1700_upstream	18	11	16	24	16	27	17	18	24	17
TATACCGTTACGAAGA	alt_1700_upstream	24	19	26	23	22	26	26	29	24	22
TATGTTATCTGAAAGA	alt_1700_upstream	12	3	16	15	10	12	13	11	14	9
CATCAAAGACGCCTTA	alt_1700_upstream	13	16	19	21	19	17	18	15	12	22
TTCAGTATGCCATGTT	alt_1700_upstream	7	6	4	7	3	4	0	5	2	3
TTCGCTAAGGATCGAA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTGACTTATGTTTCAA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TAACTTGTCCCGTTTG	alt_1700_upstream	15	11	21	18	9	13	21	20	19	10
GATCCCTTCTGTAGCG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTGCCCTAATCG	alt_1700_upstream	24	18	22	26	11	13	17	22	20	23
AAGGTTTCACATAGGA	alt_1700_upstream	14	8	24	20	11	17	14	14	12	19
AGACTGTCGGGGAGAA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CGACAGATCCGTGCGG	alt_1700_upstream	79	60	99	70	92	72	64	67	74	67
GGCACGCCCGGGATCG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTGAAGTCCTGTGGTC	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGTACATTCGGGA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
AGCATCAAATGGCTCA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
AAATGTTTATCACGAT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAGGTTTACTCCG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTGTCCACACGCA	alt_1700_upstream	17	15	27	21	13	13	7	16	14	12
TCACAGTGCCCTATAT	alt_1700_upstream	73	58	93	67	40	64	73	60	68	65
GGGGTGCCTGATTTCA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTATTACCCATTTACA	alt_1700_upstream	23	27	44	35	32	27	16	22	23	31
CGTCAAGTTCCCGGAT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TAAGTCACTCGGGTTT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGCGAAAGACCTTTAT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
AAGCATTTATGCAGAA	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGGATCACCTAGC	alt_1700_upstream	76	57	63	66	51	69	61	84	76	71
AATTCTTGCCGAGTCT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GCGGCGCTGGCCACTG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
ATGCATGGCCACATCG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTATACAGGCCTG	alt_1700_upstream	60	57	90	56	46	42	51	56	56	54
ATGGCTGTAGAATTGC	alt_1700_upstream	19	15	14	8	8	14	8	23	10	11
CACCGTCTGCAGTCTC	alt_1700_upstream	8	16	6	8	28	5	21	3	15	5
AGCATCGTTCAAGCAT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTATACAGTCCTG	alt_1700_upstream	0	1	0	0	0	0	0	0	0	0
GTTCGCATTTAGCAGA	alt_1700_upstream	15	19	23	16	15	17	17	14	15	12
TTCTGCTCAGTTTAAT	alt_1700_upstream	6	9	11	4	2	4	4	8	7	8
GCATGGCGTTACAATT	alt_1700_upstream	104	71	112	104	94	99	76	83	81	88
TTAGATACCACCTTGT	alt_1700_upstream	31	27	41	26	27	20	32	15	28	30
GTTATATCTGCTGATC	alt_1700_upstream	68	51	95	63	60	66	96	75	78	75
CGCGCCTCTCTCCCAC	alt_1700_upstream	59	48	67	68	37	48	62	59	52	39
CATCACACGGTGCATT	alt_1700_upstream	8	13	15	9	14	16	11	15	18	16
AGTAGCTACACTTTTA	alt_1700_upstream	5	5	5	7	3	6	2	13	1	10
GTTGCTTTATTTGGGT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CCATCAGTGCGCGCAT	alt_1700_upstream	3	17	12	7	16	6	15	9	27	3
AGCGGTTCAGCGAGAT	alt_1700_upstream	60	33	84	59	44	56	54	60	41	42
CAACCTGCCTCCGGTA	alt_1700_upstream	6	12	4	9	12	11	8	12	16	10
AGGGCTGAGTCTGATT	alt_1700_upstream	4	2	2	2	8	2	0	3	0	2
TGGTATACAGAGTCCG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
AGGGCACCCTTTGTGG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGTACCGTGTCTG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTTCTTACTAGAA	alt_1700_upstream	39	25	43	29	42	35	41	31	41	30
CACAAATCAAGACCAC	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TTATAAGTATGCGAAT	alt_1700_upstream	70	67	88	81	54	58	57	64	58	56
TAACCGTTTAGTGTCG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTGCTGTCGTGCA	alt_1700_upstream	46	48	54	55	43	33	37	41	52	32
TTACCGCAAGATCTGC	alt_1700_upstream	39	46	53	43	28	37	32	55	33	38
TGTTACTATTCTCCGA	alt_1700_upstream	75	57	82	56	60	73	57	79	57	66
CTCAGAAAGGAAGTCA	alt_1700_upstream	30	22	32	26	24	28	22	17	24	21
TCAATAACCAGTACTA	alt_1700_upstream	5	4	0	4	2	5	2	4	4	3
CGCATATTAACGACGG	alt_1700_upstream	58	27	55	59	30	32	39	42	38	42
TAAGGCCGGAATAGGG	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTATCCTCAGCTT	alt_1700_upstream	42	22	25	36	26	30	21	44	32	34
TTTAGTCTACGACGCC	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGTACGAAACCGT	alt_1700_upstream	4	8	9	6	10	9	6	3	5	5
GACGGTCTTCAAAGCT	alt_1700_upstream	23	31	41	31	17	36	25	27	22	30
CCTACAGTTTCATTAT	alt_1700_upstream	3	4	0	1	4	3	5	0	8	2
ACTGTGGCTGCCGTTC	alt_1700_upstream	12	9	22	17	3	17	20	20	18	9
CAACTTTTTATACTAT	alt_1700_upstream	43	41	54	52	37	46	35	34	42	29
GTATGAGGCATTCTGC	alt_1700_upstream	57	46	61	61	69	53	51	44	58	53
CGTGGGACTTCAGCGA	alt_1700_upstream	3	4	5	4	2	2	1	0	5	4
CGAACTCGATAATGAC	alt_1700_upstream	28	19	44	41	41	42	38	29	31	37
TTTTTCCTCATAATCG	alt_1700_upstream	14	16	15	16	16	8	8	12	19	19
TTAAGGTGAGATACAT	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GAATGTTAAGCCAAGC	alt_1700_upstream	0	0	0	0	0	0	0	0	0	0
GATAGCGGCCGATTTA	alt_1700_upstream	74	45	62	55	55	72	53	76	54	70
GTCCGCCACGGGCTTT	alt_1700_upstream	1	4	1	0	0	0	1	0	4	0
CAATCTGATATGGTCT	alt_1700_upstream	41	33	33	23	28	45	32	40	39	23
TTTGGAGGATTGGCCG	alt_1700_upstream	55	54	72	60	53	58	47	57	48	40
CATGCTAGACCAATCA	alt_1700_upstream	21	13	28	24	18	13	8	17	13	21
TTCATACTACCTTGGA	alt_1700_upstream	76	57	65	74	64	67	64	67	47	49
TTAGCTAGTACCTCCA	alt_1700_upstream	0	15	2	4	12	1	26	2	19	2
CCGCCCGGCCGGCTGT	ref_1616_RC	22	29	33	30	28	22	30	22	21	18
TGGTATATATCAAGTA	ref_1616_RC	69	91	76	66	95	77	88	61	89	67
ACTCACTGGAGCCCGC	ref_1616_RC	61	77	90	71	101	73	91	67	100	84
GAGATGATCAGTTATC	ref_1616_RC	25	30	31	29	38	25	26	16	34	22
CTCGATGACGACCTCT	ref_1616_RC	40	43	38	44	52	42	35	30	46	31
TTCATCCGATTCGTGC	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
GAGCTAAACTAATAGT	ref_1616_RC	36	41	35	29	41	34	34	17	40	26
TTAGTCTTGCATCTTA	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
TCGGCTATCGCATTTT	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
TGGTAGAAGCACCTTG	ref_1616_RC	40	31	35	34	35	27	26	33	36	39
TGTAAGTCACAGTGGT	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
GGTTAATCTTTTTTGG	ref_1616_RC	90	103	114	95	132	81	134	70	105	69
GAAAATGCTTTAGACG	ref_1616_RC	15	32	15	21	26	20	29	17	20	14
TGGTTCTAGGCTTCAA	ref_1616_RC	11	20	16	11	13	15	22	12	20	14
TTGGATACTGCGTTCC	ref_1616_RC	109	171	138	88	94	103	139	75	156	87
TGGTATATAGCTTAGG	alt_1616_RC	39	46	37	45	53	41	58	47	56	51
AGTTTCAGAATGAGGG	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
TGCGTAGGTTGTGGGA	ref_1616_RC	19	21	28	19	13	11	28	15	28	15
CTACGACACCGCACCG	ref_1616_RC	5	7	8	7	8	4	7	7	14	3
ACAGAGTGTTGTGTCC	ref_1616_RC	48	78	61	57	63	56	59	61	81	46
CAATACATTTTCCTTA	ref_1616_RC	19	22	15	12	6	11	14	9	14	14
CAGCCCGTTCATCAAC	ref_1616_RC	12	14	13	13	9	9	7	16	17	9
TTAATTAATTGTTGGC	ref_1616_RC	74	83	101	93	92	86	101	103	109	72
CAAATACATGACAACG	ref_1616_RC	25	20	23	20	30	21	16	24	34	18
TTTGTAAAAGGTGAAA	ref_1616_RC	1	4	2	1	5	5	3	3	2	2
AGAACGACTGTAGTAC	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
AACGTCATAATCAGCC	ref_1616_RC	28	40	34	31	31	31	39	34	36	30
GTCTGTCCCTGTCATG	ref_1616_RC	155	216	179	159	196	185	200	135	233	131
GTTAGCCATCCGCACA	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
GTGTCAGGTGTGACTA	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
GTATACGTAGGCGCGC	ref_1616_RC	45	72	26	48	71	43	68	36	91	44
CCATAACTTTGTGACC	ref_1616_RC	74	80	68	59	93	69	92	65	82	63
TCATCACCTCACACGT	ref_1616_RC	7	8	9	1	6	2	7	7	4	3
GTGATGTATCCACCTA	ref_1616_RC	21	41	28	13	24	25	33	22	42	24
TTCATCAAGCGGTAAA	ref_1616_RC	6	21	14	15	12	10	10	14	10	9
CGCATGGGGACCCATG	ref_1616_RC	7	11	24	8	16	12	25	10	15	7
CCTCGTTTGTTGTGAT	ref_1616_RC	35	44	31	31	28	24	33	44	38	31
AGTGGTACTGTTAAAA	ref_1616_RC	4	3	7	5	5	5	6	0	6	2
AATCTATTGGCTCACC	ref_1616_RC	0	0	0	0	0	0	0	0	0	0
GGCACGATGCCAGCAT	ref_1616_RC	56	58	44	43	54	56	50	52	56	51
CCCGTCGCTTTGCCCT	ref_1616_RC	13	24	22	20	43	16	28	17	31	9
AGATTACGTCATAACA	ref_1616_RC	19	18	34	21	13	25	14	25	30	26
CCTTCGATGTGGCTTA	ref_1616_RC	4	9	4	2	7	3	13	6	5	7
TCCTTCGATGTCACTT	ref_1616_RC	2	5	7	8	8	0	6	9	5	6
CGCTATCCCTTCGTGC	ref_1616_RC	37	105	43	41	133	40	135	36	125	32
CTGCTGCATAAACGAC	ref_1616_RC	32	36	52	30	35	10	25	34	35	25
TTGGTAATTTGGTGAT	ref_5645_new	0	0	0	0	0	0	0	0	0	0
TTTAAGTTTATCAGTG	ref_5645_new	34	45	53	34	61	23	40	38	50	34
TTCATGGCCAGAATAG	ref_5645_new	237	283	294	213	308	223	292	237	304	204
GTTGTGCTGTTGTCGC	ref_5645_new	0	0	0	0	0	0	0	0	0	0
TGTTAGATGATTCCGG	ref_5645_new	24	29	29	23	31	23	31	24	32	19
AAATTGCGACAATGAG	ref_5645_new	0	0	0	0	0	0	0	0	0	0
TTAGTTCAGCCTCCTG	ref_5645_new	21	14	21	19	21	5	11	9	14	19
AAAGGTTCGGAGGGGT	ref_5645_new	28	28	17	24	34	21	36	29	44	25
ATAGATCGTTTGTTTC	ref_5645_new	36	31	44	26	27	29	31	22	28	36
CACACATATTTACACC	ref_5645_new	27	46	32	17	39	26	33	31	47	25
AGTGTGCGAAACTCAG	ref_5645_new	3	5	4	10	7	11	12	7	13	3
AAGCTTCTTGGTAGCA	ref_5645_new	110	144	136	100	136	98	159	99	146	110
TGAGTATGTCTCGCAA	ref_5645_new	22	23	27	16	26	23	30	18	29	22
TCGACCTGTCCGTGCA	ref_5645_new	83	188	109	102	172	67	163	92	192	76
TTGGGTCATGCATTTA	ref_5645_new	15	26	10	7	19	10	24	5	26	14
CCCAAACAGGTTCGGG	ref_5645_new	11	19	8	13	15	11	7	7	28	13
GTCGATGGACGCACAC	ref_5645_new	24	21	42	22	35	14	29	24	35	21
ATTGTTCATGCCGGGA	ref_5645_new	0	0	0	0	0	0	0	0	0	0
TTTGTAAGTCTGATGC	ref_5645_new	8	7	6	3	6	2	9	2	2	2
GGCGGGTGCCAAATAT	ref_5645_new	0	0	0	0	0	0	0	0	0	0
GGCAAACAGAGGTAAG	ref_5645_new	30	54	56	55	62	55	61	53	72	43
CTCCCTGTAGCTCCTT	ref_5645_new	17	15	19	9	30	13	27	14	28	12
GAATGTTACACTTCGG	ref_5645_new	26	33	37	28	25	19	39	12	24	18
GTAGCACTATACTCGA	ref_5645_new	0	0	0	0	0	0	0	0	0	0
ACAAATCCGGCAGAGC	ref_5645_new	46	34	37	28	49	37	32	23	39	28
TAATGTCATCTGTCTC	ref_5645_new	5	4	3	6	7	1	4	1	11	1
CCTGCAATCCTATACC	ref_5645_new	3	9	9	3	14	8	1	5	7	5
TTTTTGATGGCTTTCT	ref_5645_new	330	316	373	278	368	274	345	309	374	273
GCTTCACCTGGATGCT	ref_5645_new	90	129	137	103	154	93	151	105	147	82
GATACTACCAGGTTGA	ref_5645_new	31	42	40	29	48	23	45	31	35	33
CATTGGTCCGTCCCCC	ref_5645_new	14	16	13	9	25	20	21	15	27	15
CCCAGTCCTGTGTGTG	ref_5645_new	86	90	60	73	118	73	77	61	128	58
CTACCTCCAGCGGTAC	ref_5645_new	11	15	12	16	18	11	11	5	8	6
GTGACCACCGGTTTAC	ref_5645_new	0	0	0	0	0	0	0	0	0	0
CATGTTTGAAACCTAC	ref_5645_new	85	138	133	85	146	91	184	108	134	99
GATGGCCTCGTGACAA	ref_5645_new	43	48	52	33	27	48	48	43	41	27
TGTGCTCACTTTACCT	ref_5645_new	5	9	15	1	15	8	7	1	11	8
TCGTTTACGTTGCTGA	ref_5645_new	54	82	64	52	82	51	76	55	79	51
TGACTTACATCAATCT	ref_5645_new	50	70	81	60	76	38	63	49	87	51
ATTTTGCAAATGTATG	ref_5645_new	0	0	0	0	0	0	0	0	0	0
TCTCTTCATAAGATAC	ref_5645_new	6	19	13	8	22	6	19	8	28	9
CCATATGCATTTGCTG	ref_5645_new	0	0	0	0	0	0	0	0	0	0
TTATGTCATCTTCTCA	ref_5726_new	38	24	33	32	24	31	23	30	22	22
GCTTGCGGATTTGTCG	alt_5726_new	108	119	115	107	91	108	116	117	106	82
GCACAGCACTTTTCTG	ref_5726_new	4	3	11	12	7	4	7	7	5	8
TGGTGTCTATCTATGT	ref_5726_new	21	19	27	15	18	26	35	12	29	19
GCCCATTAATATCATC	ref_5726_new	5	2	2	7	3	3	5	2	5	7
GGGGGTGGCCGGCTTG	ref_5726_new	73	55	69	67	50	56	70	63	67	46
ACTCCTGAATGCTATG	ref_5726_new	69	67	76	65	104	71	68	78	85	62
ACGTATACCTCCCTGT	ref_5726_new	3	18	3	1	19	2	8	1	15	2
TCGAGATGTTTCCTAG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TGACCGTAGTCTTCTT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CTACGTGTGAATGCCA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCCTCTAGGCTCGTTA	ref_5726_new	31	43	46	41	48	45	52	43	38	31
CCTAATTTCAGCCTAT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
ACTGATATTGTTTGCC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GATCCGGGATAGTTCG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CACAGCGTTAGGTCTA	ref_5726_new	35	35	41	39	59	39	41	36	50	20
CGTTCAGCTATGTACT	ref_5726_new	16	25	28	25	24	16	40	20	41	20
ATCTTTTGGTACATTC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TTATGCTGTATAAGGT	ref_5726_new	39	26	45	33	27	30	34	45	37	29
TGGCAGACTCAGTACA	ref_5726_new	12	12	12	12	14	8	19	10	14	10
ATATGGGACCTTTTAG	ref_5726_new	12	13	8	10	7	7	10	7	9	4
TGTTAACAGGTTTCAT	ref_5726_new	4	9	16	16	8	11	16	5	11	6
TTCCGTGCACTTCTCG	alt_5726_new	130	140	150	132	143	113	123	118	156	117
CATTCGGGGGTGGACA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GCAAATATTGTGTTCC	ref_5726_new	17	13	21	15	9	13	9	14	10	6
CATTCCGGGCATGCGG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GCAGATCGGGAGTATT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TGCATTGTGGGATCAT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ACATGGCGGTTAAACT	ref_5726_new	85	70	106	95	55	103	75	85	60	90
ACAAGTTGTACGGCAT	ref_5726_new	16	18	15	21	12	11	16	15	19	19
CGATTGGAATCGTCTT	ref_5726_new	15	37	37	22	31	28	39	29	34	19
GCGCGAGTTTCTCGGC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCAGTTGACATACCCG	ref_5726_new	18	37	24	27	37	26	29	18	35	16
ACAAGTCAAAATTCGC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCGTGCGTAGTAAACA	ref_5726_new	14	16	24	15	20	12	26	18	24	11
ATGGAAAGTTGGATAC	ref_5726_new	14	19	30	20	25	19	14	17	20	21
GCGTGGTACCGTCGGT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ATTTCGCAATCTGTGG	ref_5726_new	73	74	66	64	64	70	74	45	66	31
TCTGACTAAAGAAATT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CAAACGGGGCAAGAGT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TGCAGTCACCTTTCGT	ref_5726_new	63	82	79	75	68	53	85	53	93	54
AGTTTTACTTACAGGT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CTTTGTATCGATTGTC	ref_5726_new	20	22	36	22	24	27	28	28	18	11
TATTGTACATTGCCGT	alt_5726_new	30	42	28	15	26	31	40	21	39	23
CGTTATGGTAGCATAA	ref_5726_new	92	105	101	96	92	76	83	85	115	66
GCGAGTACCAGATCTC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ACCGCGTATGCTTGAT	ref_5726_new	9	7	6	7	10	9	12	5	12	8
TGTTGACACCGATATT	ref_5726_new	11	13	7	5	12	6	9	9	8	11
TCCTACTGCGGTTTCA	ref_5726_new	3	5	5	4	6	1	3	5	8	3
GTGCAAGTCTTCGCAT	ref_5726_new	8	11	7	9	20	14	13	7	9	6
CGAGTTCCACGTATCA	ref_5726_new	24	31	21	33	25	35	29	24	41	27
CGGCCTGCGTTACATC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCACATCTATTGGCAC	ref_5726_new	21	22	12	25	12	10	18	15	17	7
CGTAGCACGTCTACCC	ref_5726_new	19	55	18	16	62	18	41	19	44	17
TTGCCAAAGAAAGGTG	ref_5726_new	45	38	61	35	64	45	57	39	36	45
CCGCTGAGACCCCAAT	ref_5726_new	6	7	10	8	3	5	8	6	8	2
CGACAGGTATCTTTGC	ref_5726_new	16	12	18	17	17	27	27	16	23	12
TAGCGAAGGTTCTATG	ref_5726_new	18	12	12	16	17	12	7	9	18	10
GTGGACATCTATATCC	ref_5726_new	9	16	12	11	4	4	11	18	7	11
GATTGCCCATCGGTTA	ref_5726_new	26	17	43	17	19	23	20	25	29	24
AGATCACCATTATACG	ref_5726_new	13	20	11	21	9	17	13	16	16	19
GGATCGAATTCTTTAG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GTCGTATAGTGGTTTA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CATTAGTTCAAATGCC	ref_5726_new	2	6	6	5	2	1	4	2	3	3
TTAGCCTATGAGTGCC	ref_5726_new	3	11	13	8	9	6	5	8	13	7
GGATAGTTCCTGGGCA	ref_5726_new	21	26	42	19	25	33	23	21	23	20
GGTCGGCCATAACCTT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TGCCTTGAATCAGCTA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ACCGGTTCAACAGCGG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
AAAACGAGTCGGCCTA	ref_5726_new	82	81	104	83	75	63	91	80	99	79
GTTCAGACCTTATCAT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCATATAAGCTGTGTT	ref_5726_new	16	24	16	21	13	6	18	14	11	17
GTTTTGTGTACCCACC	ref_5726_new	24	64	61	40	62	42	41	50	75	44
GGTAAATGGATTCTTT	alt_5726_new	26	29	27	32	29	44	53	26	37	33
CAGACCGTTACACTGA	ref_5726_new	0	0	0	0	1	0	0	1	0	0
TGCGGTTTCTGAAGGC	ref_5726_new	82	84	103	76	85	81	102	101	74	77
CTTATGCTCATCCGCA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GGCCTGACGTGTGCAT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GTACTTACTCTCTGAA	ref_5726_new	30	53	34	27	48	24	47	26	32	21
CCCACTGAAAATGTTT	alt_5726_new	95	98	133	114	78	113	103	106	114	111
ATGGTCTGTCCGGTCT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ACGTACTTACATGAGT	ref_5726_new	4	12	10	5	12	2	15	7	18	7
GGCCGTAATATCGTAC	ref_5726_new	30	39	34	41	52	36	48	44	43	27
ATTCAGTTGGTTAGCT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TGTAATAATGGCTATT	ref_5726_new	0	2	6	0	3	0	1	0	2	0
TCGAATGCACCTGTCT	ref_5726_new	12	14	6	14	9	11	17	7	13	5
TCACCTGTGAAGTGCC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ACTCCTGCTTATACGG	ref_5726_new	4	6	8	5	3	6	7	5	6	7
TGCGCAGAGATTTACA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GGTTCTTTCAACCAAC	ref_5726_new	34	48	38	45	46	35	56	31	47	33
TGTCACACAGCGTCAA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ATTCAAGTGGTGTTCG	ref_5726_new	5	2	8	4	8	5	3	4	9	6
GTTTTCACGAAGCGCG	ref_5726_new	44	31	34	40	24	40	42	35	38	34
GGTTGGTTAGTACATA	ref_5726_new	54	55	71	69	48	46	51	55	46	40
GCGGCGGATCACGGCG	ref_5726_new	75	63	60	49	50	45	34	43	62	50
TGTTCGCGATAGTTCT	ref_5726_new	0	6	8	2	7	5	7	6	2	0
TATTCTAATTCATGTT	ref_5726_new	21	9	23	10	10	16	21	16	15	14
CGATCATCATACTCAG	ref_5726_new	10	9	24	9	13	13	13	18	9	12
GATACACCCTGTTCGT	ref_5726_new	16	31	20	13	36	17	47	17	29	14
ACCTAGCTGTTGTAGG	ref_5726_new	21	16	13	12	21	17	14	11	13	14
TCATCCTTCTTCGTAG	ref_5726_new	9	5	6	9	6	3	2	4	8	8
TTCTGTTTTGTTATAT	ref_5726_new	4	3	6	3	4	4	4	3	3	4
TTATGACCATAACGGT	ref_5726_new	8	19	17	9	11	5	16	6	16	4
GCTCTTCTCTGTAATT	ref_5726_new	0	7	10	7	7	4	5	4	2	1
GTTTTAGATCTGATTT	ref_5726_new	10	8	20	8	11	16	9	12	11	7
CTGAAGAGTACAGCCT	ref_5726_new	53	46	48	63	51	36	69	45	40	38
GCCACGGTTTCTTATG	ref_5726_new	35	31	30	33	33	31	37	27	49	27
TGGGTCGTGCATGTTT	ref_5726_new	47	53	57	38	66	43	46	52	71	37
TGGCAGATGTCTGAGT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TGGGGATTTCAAACTT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCGTATGTTATGCATA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GGGGCGCCGGGTCCTT	ref_5726_new	21	33	29	24	23	20	28	16	36	18
TGGAGGTCCACTTCGG	ref_5726_new	9	11	17	12	11	12	7	10	12	7
CCTAATGTTTTCCGGT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCGCCGCGTGTTTGCA	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CTGTTTAAGCTAAGGA	ref_5726_new	10	25	20	23	24	18	17	18	21	15
GTGATAGTTCTCATCC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CGATGACTAGAAATTT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TAGCCAATATCCTTTT	ref_5726_new	110	107	138	91	117	95	134	70	132	86
TCTCTGCCCAATTCCC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CGCGTATTCCGCTGTC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TTATCCACTACGAATA	ref_5726_new	28	17	17	29	22	17	21	18	16	10
GGTCAAGCCATGAGAA	ref_5726_new	31	31	41	49	47	49	50	27	36	36
TCTTATGCAGCACACG	ref_5726_new	17	29	37	23	27	21	18	15	35	25
CGTCTAATCCGCGGCT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TCCAGAAAGCTATTTA	alt_5726_new	35	40	47	28	39	33	42	45	47	30
TTGTTGGGCAAGCAAC	ref_5726_new	17	17	14	24	21	21	19	16	20	14
GGTTCTTCTCGTGAAG	ref_5726_new	12	15	15	24	14	25	19	7	14	11
TGTACCCTCGAAGCGA	ref_5726_new	26	42	28	31	43	27	41	32	41	35
CCCGGGTTGTAAGGCC	ref_5726_new	20	31	34	20	26	23	50	25	32	20
ACCGTCGAAATACGAC	ref_5726_new	16	13	13	18	22	22	16	17	17	12
AGTCAGGCTTGCCCTT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GCATAACTCGGCTTAA	ref_5726_new	125	118	142	139	164	101	179	104	164	99
TTCCTGTACGAGGACT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GTCTACTCCCTTGGGC	alt_5726_new	18	57	15	9	62	9	61	6	51	15
TTTGCCATGTGCATCC	alt_5726_new	208	193	265	187	227	206	236	190	213	177
TGCTCCATTGCAATCT	ref_5726_new	65	47	73	66	76	73	53	55	65	55
TTAGGTTCAGTTATGT	ref_5726_new	26	24	25	23	22	27	26	21	30	18
CTCTCGGTATCCCCCT	ref_5726_new	1	3	1	3	3	0	3	3	1	3
AGAATTGTCCTCCATG	ref_5726_new	25	17	22	17	20	15	18	28	25	13
CCTCTAGATAGTACGG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GTTCATGAAACTGAGT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
AAGGTCATTACAATTT	ref_5726_new	21	22	24	16	15	9	18	16	20	17
CCGCACTTGGTCGATT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GCATGCGCATTCATAG	ref_5726_new	12	11	22	24	11	18	23	13	16	12
AAGTTTCGCTCACTTG	ref_5726_new	4	12	3	3	6	3	4	5	4	7
GACACTATTTTTTTGA	ref_5726_new	7	7	6	13	9	5	9	9	8	0
CTCGCACGATTACTCC	ref_5726_new	22	17	25	19	38	26	26	23	23	23
AACCGTCACGAGTAGA	ref_5726_new	127	148	166	142	161	136	176	117	152	127
CACCCCAATGACTTCC	ref_5726_new	47	46	52	32	44	35	54	34	35	31
CTGGATCACCAATTCT	ref_5726_new	23	14	27	14	11	13	22	18	21	14
GCGGAGAGGCACTCTG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
ATGGTGTTCTCCTCGC	ref_5726_new	9	11	14	11	7	8	10	9	7	15
TTTACAGCTTTCATCT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CACCTGGAAGCTTGTG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CCACCCAGAATATTTT	ref_5726_new	14	57	11	11	54	13	63	6	57	4
CGTATTGTGATGCGTT	ref_5726_new	139	174	158	162	171	144	201	153	164	115
AAGAAGATGTGCATCT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
TTTGGCTGTCTTGGAG	ref_5726_new	18	23	20	13	17	5	21	19	19	6
TTACCCCGCCCCCTGT	alt_5726_new	16	19	15	13	15	22	14	16	25	20
CTCGGAAGAGTCTTGC	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CTTAGTGTTAAGACGT	ref_5726_new	16	14	26	23	27	18	19	19	20	15
CTGTTTTTTTGCGTTC	ref_5726_new	22	35	36	46	37	36	40	22	37	24
GTTACATCGCTTATGA	ref_5726_new	9	17	15	21	19	10	10	15	8	19
TAGGGATGCGCCTATG	ref_5726_new	45	42	44	34	33	24	35	29	48	29
GTTCGGCAGCCGTTTG	ref_5726_new	0	0	0	0	0	0	0	0	0	0
CCCTTTGCTGGAGCTT	ref_5726_new	0	0	0	0	0	0	0	0	0	0
GCCTCATATGTGACAC	ref_5726_new	35	36	64	44	34	34	55	32	52	22
CAGTCTGAGCCCGTCT	ref_5726_new	6	12	5	8	16	11	10	7	10	10
GTTCTTTATAGGTTGA	ref_5726_new	19	13	9	5	18	13	16	9	12	12
GATGGAGTTTGCAGCT	ref_5726_new	20	19	17	19	16	15	24	19	15	19
TACGGAAGTACAACCT	ref_292_fdr	55	27	75	60	33	64	34	49	30	51
GGTTGAAATTGTAGGA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTTCGATGGCTTT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTACGCAGGGTC	ref_292_fdr	31	13	36	38	24	20	16	43	31	28
ATTCCTAATTGGTCAT	ref_292_fdr	8	8	5	7	1	6	5	4	9	2
GGTGCGCCTTTAATCA	ref_292_fdr	126	58	156	107	60	102	58	128	65	107
CAGGAGTCAAGTTTCG	ref_292_fdr	277	138	310	314	156	244	165	280	141	248
GGTAGCGAAATATGTG	ref_292_fdr	37	17	43	35	21	23	12	28	19	17
ATAGTCTCGTTCTGGG	ref_292_fdr	82	56	117	88	45	85	52	87	51	85
ATCCCAACGGCACATT	ref_292_fdr	169	64	188	163	82	142	99	138	74	138
TTTGGAATAGGGGGTG	ref_292_fdr	85	42	81	102	57	96	44	95	48	92
CGCTCGTTAGTATTAC	ref_292_fdr	612	393	730	641	388	630	402	577	363	526
ATACTGATCGTATTTA	ref_292_fdr	35	32	46	46	24	32	37	41	27	37
TCGACCGGCGTATGGT	ref_292_fdr	27	17	31	24	17	26	20	22	15	23
ACTAGTTCGGGTTGGA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
AGCATGCAGAAGCCGC	ref_292_fdr	14	8	11	12	1	10	11	15	13	14
CTTGGATTTAACCGTG	ref_292_fdr	68	40	77	72	49	88	49	69	53	69
AACTTCGACAGCACTG	ref_292_fdr	76	52	115	104	43	91	45	81	58	69
TAGCCCAGTTTGTCAG	ref_292_fdr	107	73	128	97	76	126	82	91	68	96
CAAAGCGTCAGGCATA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
CAGAATCGTCGACCGG	ref_292_fdr	40	14	45	31	20	49	23	27	14	40
CTCCGTTATGGGAGCC	ref_292_fdr	79	37	121	78	45	76	51	71	44	78
CTTTCGACGAAGAACC	ref_292_fdr	226	110	308	230	129	226	126	185	106	205
AAATCGCAACACACGT	ref_292_fdr	193	123	242	210	132	176	104	234	115	201
CTTGTAGTAAATCGAA	ref_292_fdr	119	57	145	129	66	108	48	108	51	87
TGCACGCCTTCGTGGT	ref_292_fdr	32	24	23	40	34	34	27	43	27	25
TGCGTTTATTTAACTG	ref_292_fdr	6	3	5	9	3	9	3	7	0	4
TGGGGCTGGCACTGTT	ref_292_fdr	85	49	108	94	40	85	62	87	51	68
TCCCCTCTACTCCACA	ref_292_fdr	160	94	248	216	84	175	100	196	101	154
GAGTCTTAGGTGTTTT	ref_292_fdr	75	47	96	79	48	68	55	48	41	72
CACAATCTGCTTTGCA	ref_292_fdr	30	22	27	34	29	25	18	49	29	38
TTAAGCTGAGATCCTG	ref_292_fdr	131	67	167	149	78	132	88	163	85	137
TCATTGCCGCTATCGC	ref_292_fdr	26	25	49	48	16	31	32	27	39	25
GTCACTGGCAATCCAC	ref_292_fdr	111	88	138	131	69	126	82	134	78	114
AGCCGATCGGTTATAC	ref_292_fdr	15	7	22	20	13	26	12	23	12	14
AACGGTTAGTTGTTTA	ref_292_fdr	35	22	34	32	13	26	12	23	20	34
CGACGTTTGGCCGTTT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
CTCACTCTGTCGGCAT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGCTATAATGATC	ref_292_fdr	19	4	33	22	4	20	9	12	8	16
TTGATTAGTCGTAGAT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGTTTACAGCATA	ref_292_fdr	32	24	41	41	19	28	21	31	18	25
GTATTTTTCTAACCTA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GGTGATCTCAACTTCC	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCATCATTTTGG	ref_292_fdr	77	40	91	87	51	77	32	62	38	47
CGTCTCGACGCACATG	ref_292_fdr	219	102	295	254	124	211	127	250	101	231
TATTTCCGAACGGACA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGCTTTTTAATAA	ref_292_fdr	74	30	92	60	36	77	38	57	45	59
TCGCATAGCACCAAAA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
CAAAAGTTGCCATCCT	ref_292_fdr	28	18	42	32	18	22	18	30	23	15
CTCGGCAGGGCGGACC	ref_292_fdr	184	83	241	172	83	163	82	195	104	173
TATCCTGCGTTCGTGC	ref_292_fdr	142	70	152	121	67	122	78	123	70	122
TGAGAACTCGTCTGCC	ref_292_fdr	230	94	229	217	108	189	115	209	109	197
TCACAACTCGAAGGCC	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTGCATATATGAA	ref_292_fdr	15	5	22	10	8	7	4	13	8	10
TAAATGCGTCTACACG	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TGACGTGCGCCTTGTA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
AGACTTTTAGTTCACT	ref_292_fdr	50	40	87	66	57	57	32	71	34	72
TCGATATGGCTAGTTT	ref_292_fdr	108	70	163	127	57	120	74	125	86	102
ATCATGGTCGTTGGCT	ref_292_fdr	10	32	12	6	17	6	19	13	17	10
ATATTCTACCGGCGTG	ref_292_fdr	36	21	34	26	20	32	10	42	21	22
CGGGACTTCTTTTTAC	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAGTGAAAGAAAA	ref_292_fdr	71	30	90	71	51	86	40	57	47	61
GCTTACCATAAGGAGC	ref_292_fdr	27	28	35	35	31	24	24	26	11	24
GGCAGGACTAGACGTC	ref_292_fdr	24	11	44	29	15	22	17	24	12	26
GCTCCGGTCTACGCGA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
CGGATGGGTTGCCGGT	ref_292_fdr	76	39	91	73	33	76	37	56	40	58
ACATTTCGTGGTTATA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
CGGGACCCTTCATTGC	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GATTCAAGGGGCTGTC	ref_292_fdr	107	63	165	147	62	117	83	133	67	122
ACAATTTTGGGGTCGG	ref_292_fdr	78	31	101	105	41	76	37	69	50	64
ATGGCGTTGTCATATG	ref_292_fdr	71	34	68	77	36	58	37	59	37	65
GAGACGTTCCGGTGTT	ref_292_fdr	82	44	83	70	38	75	54	73	41	67
CACTATTCCTCCCGCG	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GGGAGATACTGAACGA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGAGACCCATGGT	ref_292_fdr	5	2	15	7	11	12	4	17	8	6
CTTTTTTACTGAATCT	ref_292_fdr	2	4	4	7	2	5	2	5	0	5
TGCTTCATCCCCTATT	ref_292_fdr	51	29	71	46	37	53	34	55	26	47
TCACCACTTGTGGTTA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
AGTAAAACGTACGTCA	ref_292_fdr	181	118	236	178	109	161	107	151	117	148
TCCGCCTGCTCACCTG	ref_292_fdr	89	51	97	94	46	70	64	80	60	92
GAAGTGGTCTCCAAAA	ref_292_fdr	130	67	140	133	61	150	71	135	69	108
ACTCGTGATTATGCAC	ref_292_fdr	40	22	55	24	26	40	13	30	20	23
TTGGGACTGGAGAATA	ref_292_fdr	3	4	4	2	0	0	3	3	1	3
CGTCCGGCCAGGCGGT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAGACATCCTTTG	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCATATCTGCGG	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GGGACATAGTGAGGCA	ref_292_fdr	67	47	110	79	48	77	41	82	36	66
ATGACTTTGACGTCCA	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTCATTAATTTTC	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
ATACCAGCCATTACTA	ref_292_fdr	146	88	182	182	90	142	91	183	88	144
CTCGGCTTCATGAGCT	ref_292_fdr	40	17	56	49	27	47	22	54	25	40
GAGGTATGCTGATAAT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCGGTACCACGG	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TTACTGTACTGCCATA	ref_292_fdr	52	40	73	81	35	62	33	72	46	47
CTGTTATCGGTTATTT	ref_292_fdr	89	46	95	100	66	96	61	94	57	78
AACGTATCTTTTAGAA	ref_292_fdr	138	85	173	159	79	115	66	136	63	95
CCATACCAGGAAGCTG	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCTGCGTTAGTAT	ref_292_fdr	56	34	62	54	29	60	36	44	37	49
ACCTACTACATAATTG	ref_292_fdr	74	46	102	104	65	70	43	87	43	75
GCACCGTGTCGAAAGT	ref_292_fdr	34	11	36	23	17	23	11	20	20	20
ACAACAGGACCATATG	ref_292_fdr	5	4	7	8	2	9	1	5	7	7
TACAGAGTGGGGCGTT	ref_292_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTTAATATATGTC	ref_292_fdr	95	52	124	128	56	123	65	103	85	73
CTCCCTATTTCCGCTC	ref_292_fdr	20	17	19	28	20	15	15	19	27	12
TGGGCTGGAAGGGCGT	ref_292_fdr	180	108	239	212	76	177	120	201	118	171
GCCTCTGCACCGTTCC	alt_1762_fdr	50	35	81	64	35	51	57	61	37	50
CTCTAGAGTGACATGC	alt_1762_fdr	5	1	5	5	4	2	6	4	2	6
ATGCCGTTTTGTTTTC	alt_1762_fdr	55	25	72	79	35	59	28	75	44	48
GATATGAACTGAATAC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GCTCACCATCTGGCTT	alt_1762_fdr	8	2	5	5	2	5	7	6	8	7
TTACAACAGGGCTTCT	alt_1762_fdr	13	5	6	13	4	10	6	7	15	6
CCTATTGGCGTCTCGT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TGTATTCGGCGCTCTC	alt_1762_fdr	105	48	170	132	54	103	85	133	81	108
CTTCGCTGGCGCGCCA	alt_1762_fdr	75	43	95	86	32	61	36	74	55	62
AGTTGGTTGTGGCTCG	alt_1762_fdr	42	17	53	41	20	32	21	35	38	40
TGGGCTCTGGTGGTAT	alt_1762_fdr	113	79	144	117	57	107	76	124	101	86
TATAAAGTCTCTCGCG	alt_1762_fdr	125	77	126	118	87	108	65	110	74	93
GGTCCGCCCATGGGCC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GAACGCGACCCACTAT	alt_1762_fdr	85	44	85	85	67	69	67	76	74	68
CTCTTCAAAACTTGCC	alt_1762_fdr	217	139	313	267	121	210	141	232	117	210
TTCTGTAGCCTTGTGA	alt_1762_fdr	265	166	302	229	142	206	185	180	155	181
AACTTATTTCGCCATG	alt_1762_fdr	7	7	13	7	3	5	2	4	4	4
GAGGTTACGGCAATGT	alt_1762_fdr	77	33	86	68	51	60	53	76	46	58
GCGTTAAAGGAACATT	alt_1762_fdr	23	12	19	34	8	29	15	18	21	33
TTATTGGGGTGCTGGT	alt_1762_fdr	9	7	21	25	13	12	11	12	13	12
TTGTCTTACGTCCTCT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGTTCAGTCGCCC	alt_1762_fdr	324	159	383	316	153	343	184	336	193	279
ATTAAGCACGTATTCA	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTCGGTATCGTTA	alt_1762_fdr	81	45	74	52	40	60	38	69	48	51
AAATTTAGGATGTCGA	alt_1762_fdr	0	0	1	1	0	0	0	2	0	0
CCGGGCAAGATCTCTG	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
ATCATCTCACATGCAA	alt_1762_fdr	139	74	207	146	100	130	100	128	123	122
GCTGATCAAATCCGGC	alt_1762_fdr	30	47	35	34	74	28	60	32	56	23
ACGTGGCTCTTTCTTG	alt_1762_fdr	113	64	170	155	66	121	63	112	65	112
TTTGTGTGGTATAAGC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CCCCTCTATTCTTAGG	alt_1762_fdr	0	1	6	4	1	2	1	2	1	2
TGGAACACCGCAGCTA	alt_1762_fdr	171	78	225	197	100	173	93	143	97	167
GCGAAGTCTAATAGTG	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCATCGCCAACGG	alt_1762_fdr	30	29	46	41	30	41	21	47	27	30
GGGTAGCACGAGTCCA	alt_1762_fdr	20	8	22	29	13	18	9	12	11	15
TGCGATTTGTGATTAT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TAAATACTTTGAGCGG	alt_1762_fdr	38	20	29	30	23	41	19	24	18	23
GGCTTCATTTTGACTG	alt_1762_fdr	57	28	70	53	34	42	33	60	26	49
AGTGTTCGCTTGATCG	alt_1762_fdr	32	18	36	36	21	34	24	32	21	36
CCTTACATAATCTCAC	alt_1762_fdr	16	13	19	23	9	15	14	16	10	7
TGGTCATACGCGCTTT	alt_1762_fdr	41	33	58	51	37	46	36	32	34	41
AAAAGCATATAGTCCT	alt_1762_fdr	31	17	37	43	17	39	19	28	19	25
AACGATTGATATTACA	alt_1762_fdr	12	5	11	16	6	10	6	8	8	13
ACGAGGGACCATTGAA	alt_1762_fdr	1	0	1	1	4	1	2	4	1	1
TTTACTTTGCGTACGC	alt_1762_fdr	248	164	284	229	146	240	153	178	156	184
GCCTGCGTGTCGGACC	alt_1762_fdr	133	75	166	126	70	107	99	104	61	101
TTTCCAATTTCGACGG	alt_1762_fdr	21	9	18	27	4	15	5	21	2	12
AAATGCTCTAGGGAAC	alt_1762_fdr	19	32	46	36	19	28	11	21	28	23
CACATCACCTCTGACT	alt_1762_fdr	12	2	8	8	5	8	3	6	11	6
ATGTGCGGGAAGGGAG	alt_1762_fdr	28	18	46	40	16	30	12	32	20	32
TTTGTGTGGAATAAGC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GGGCATGGGGCTCGCG	alt_1762_fdr	28	20	34	31	26	35	23	36	30	26
GCATAGTGGGCTAGGG	alt_1762_fdr	85	41	117	100	61	90	54	91	61	100
GGTGCGGGCCTTAGGT	alt_1762_fdr	81	57	122	103	49	92	57	103	41	95
TTAGTGTGGTATAAGC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGGACCCGACTAT	alt_1762_fdr	52	37	57	62	33	46	32	44	31	38
TAGATTAACTGTAATA	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTAAGAACAAATC	alt_1762_fdr	332	155	463	375	190	317	187	354	211	327
ACAATCGCGTATCAGT	alt_1762_fdr	117	84	166	147	86	130	98	124	103	113
GTTCTGACGGGAACGA	alt_1762_fdr	8	3	8	11	11	8	6	4	7	8
GCTTCACTCTTATTCT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CGATTATCCTTTAATA	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTGCAGTCCGTAT	alt_1762_fdr	25	13	21	25	14	18	18	28	20	18
GTGTAAAGTGTACATC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TTAATTTCTGCCAGAC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGGAAATAATCT	alt_1762_fdr	14	16	24	24	16	25	8	24	11	18
GTAATGATTTCGTCAC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTTGCAAGTGAT	alt_1762_fdr	101	78	132	103	47	106	62	105	57	79
GTCCGAATTGGTCCGC	alt_1762_fdr	14	16	21	12	10	12	7	15	10	9
TCACTCCCCGGTAACG	alt_1762_fdr	0	5	1	0	1	1	4	0	4	0
GTATGGGCCCTGTCAA	alt_1762_fdr	47	15	66	52	24	54	30	27	25	40
GCGGGGAAGTCTCTAA	alt_1762_fdr	8	2	8	8	7	11	11	9	5	11
AACACATCGAATTCTC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTCTTTTGCTGCG	alt_1762_fdr	31	17	48	35	20	31	31	42	22	26
TACAACATAGCCCACT	alt_1762_fdr	84	31	86	94	72	68	46	68	57	57
CACCGATCCGTATTGG	alt_1762_fdr	46	33	51	54	34	44	36	39	33	38
TATGATGGATCAATCT	alt_1762_fdr	73	64	77	85	61	74	55	81	63	82
TTGAACGCACATTTGG	alt_1762_fdr	95	72	130	95	58	86	64	74	62	83
TCATAGGGCTGTGCTT	alt_1762_fdr	35	19	41	37	14	54	16	35	34	29
AGTTAGGGGCGTTACG	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TAATTTGTATCCTGGA	alt_1762_fdr	8	4	18	6	6	17	12	9	5	10
TTACGCCGTGCAACCA	alt_1762_fdr	53	45	92	80	34	70	42	65	32	48
ATTCATGTCGGCGCTT	alt_1762_fdr	143	61	166	181	83	134	92	152	74	113
GCTATGCAGCTAAAAG	alt_1762_fdr	15	11	15	19	11	17	7	15	6	7
GGCCTTTGTTTTTTAG	alt_1762_fdr	52	25	71	73	45	53	25	40	22	35
GTATAAAAAGTTGGTC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTAATGTCTTGTC	alt_1762_fdr	18	10	32	20	13	30	16	19	10	20
ACGCAGCGAGTTCTAG	alt_1762_fdr	69	28	72	68	46	62	32	50	47	51
TGGTTTGTATGTCTAA	alt_1762_fdr	84	39	84	97	39	92	50	82	55	72
TCGGTTGGTTCTGTCT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTCCTCGGATCAA	alt_1762_fdr	151	84	199	173	94	157	97	159	117	148
ACCTGAACGGAGGCCT	alt_1762_fdr	372	229	443	387	220	336	198	337	205	358
TAGGCTTAGACACGTC	alt_1762_fdr	48	35	52	56	35	72	27	46	35	48
GTTTATGTTTCATCAC	alt_1762_fdr	54	56	77	65	38	54	30	55	51	54
TGTCGTCTCAGCCCCT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CACCCGACTTTAACGC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTGCCAATATGCA	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGCGAAGTGAGCC	alt_1762_fdr	96	52	118	88	55	88	56	85	73	76
CACCCATTATCATTAG	alt_1762_fdr	89	44	90	102	70	82	53	69	53	77
CCGAGTTGGGGATAGG	alt_1762_fdr	31	18	48	31	31	40	27	36	25	44
CCCTCCGATACTTTGT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
TCACCTCAAGCTATGC	alt_1762_fdr	4	1	1	1	3	4	2	5	4	3
CGTATAAGAATAGTTG	alt_1762_fdr	123	73	182	148	68	160	108	137	96	116
ATTCATGTCAGTGTGG	alt_1762_fdr	27	31	40	31	23	29	28	30	37	27
TTTGTGCGGTATAAGC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GGGTCTAAAGTTTGAT	alt_1762_fdr	24	19	41	29	14	39	18	22	18	19
TCAGGCCCCATCCCCC	alt_1762_fdr	69	38	105	92	39	61	36	69	18	46
ACCTCTGTTTTTCCTT	alt_1762_fdr	50	28	83	44	20	66	19	66	26	43
ATGTGTGAAACCCCGG	alt_1762_fdr	9	16	5	16	3	9	7	15	3	14
CCTCTTTCGGGTTCAT	alt_1762_fdr	75	45	99	79	41	60	47	60	50	52
AATCGAATTGGGACTC	alt_1762_fdr	9	1	4	6	2	5	7	8	8	6
CTGTGGAATCCGTTGC	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
GCATGTGCGAGTAAGT	alt_1762_fdr	0	0	0	0	0	0	0	0	0	0
CATCTGACCATGATAA	alt_1762_fdr	77	42	86	77	61	74	50	60	61	55
GTTTGGTTATCTACAG	alt_1762_fdr	38	22	56	40	21	44	27	52	17	33
GGTGTAAATGTTAAGG	alt_1762_fdr	226	125	283	300	162	240	158	224	159	203
TTTTAAGGTGTTTAAA	alt_904_upstream	37	20	67	49	21	41	22	48	23	32
GTCGTTGCGTTTGTGA	alt_904_upstream	231	104	241	202	91	204	98	201	78	141
GTGTCTCTTTATTGTA	alt_904_upstream	217	93	239	216	92	195	89	216	131	194
CCTTTTTTAGCGATTG	alt_904_upstream	98	37	117	110	46	74	58	65	47	79
TAAAGCTTCTTAATTC	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TATGCCTATCTCAGTG	alt_904_upstream	75	62	117	105	61	100	50	100	54	79
CACCCAGTGAGGTCTG	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
AGATATCCGCAACCGA	alt_904_upstream	77	37	83	85	36	99	34	117	31	83
TTTGTATTCTCTGCTT	alt_904_upstream	41	20	73	48	22	49	18	54	23	38
GGTACTCACTTTCCGG	alt_904_upstream	91	33	93	96	34	79	34	86	28	71
GGCCGTCAACACTTCT	alt_904_upstream	94	35	114	82	30	70	27	106	29	93
CTCCACTTACATCTCT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
ATGAACATCATCACAC	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGACTAGACAGTA	alt_904_upstream	25	16	36	24	4	17	10	21	9	20
TCTGCTTCCGTTAGGG	alt_904_upstream	225	88	287	227	89	228	89	223	116	199
GTTATATAATACTTTT	alt_904_upstream	225	99	263	202	94	186	89	228	108	202
CTTGATTACTACTAGA	alt_904_upstream	245	97	313	267	83	233	98	234	133	223
TCCATTTTCTGAGTTT	alt_904_upstream	164	71	206	196	58	154	45	145	51	147
TTTCTGCGCTTTCTCA	alt_904_upstream	39	17	33	23	12	30	15	32	23	21
CATTTTCCGAGGGCGA	alt_904_upstream	324	138	409	373	124	322	133	345	130	337
GACACGTCAAATCTTC	alt_904_upstream	195	91	193	210	120	162	97	198	87	187
TGTTTACGAAGAACTC	alt_904_upstream	77	34	117	101	29	105	39	92	39	48
ATTAGTTAATATACAG	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGAATTACCTTTT	alt_904_upstream	319	144	374	361	142	309	147	297	171	296
TTAAAACCAGTGTCGG	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGACTCGCTACTA	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
GATCGATACACATTTG	alt_904_upstream	155	56	217	177	71	171	68	138	59	130
CCAATCTGGCATTCAA	alt_904_upstream	144	60	153	192	74	147	62	140	77	110
TCCCGGGTTCTCAATG	alt_904_upstream	69	27	64	53	27	51	31	53	31	62
ATCTTACTCGGGACTC	alt_904_upstream	347	93	333	325	118	265	127	318	119	256
TCCAGGTTGCACTTCC	alt_904_upstream	122	70	134	111	57	99	65	116	76	122
CTCAGTGATTAGGGAC	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
AAAACAAGAGAGTTTT	alt_904_upstream	361	148	504	429	158	349	135	325	179	320
ATGATAGTAGACCGTA	alt_904_upstream	249	95	276	253	106	232	105	221	97	249
ATTTAGCGGCCGGGTC	alt_904_upstream	68	33	102	108	36	82	38	88	31	72
CTAACTCTACGTAACA	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCAAGAACGGCTG	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAGCCACGTCACA	alt_904_upstream	158	85	209	171	84	185	85	150	96	161
CTATCGTCAATTATCC	alt_904_upstream	65	36	75	78	20	75	36	67	31	70
GGGTTTTCACTTGCAT	alt_904_upstream	409	154	513	439	178	454	189	422	186	404
GCCGCTTCCTTTGCGC	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGATGCTATCCG	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCTTCCCGCATCC	alt_904_upstream	206	135	260	186	110	215	117	188	138	168
GGTTCCCTTCGAATAA	alt_904_upstream	44	18	37	35	20	43	18	45	15	34
TTCCGACTCAATTGGA	alt_904_upstream	27	17	30	30	12	39	11	29	9	30
CCGAGACCCATTTCAC	alt_904_upstream	26	15	18	23	13	18	24	18	16	23
CCTAAATCCGTGGGGG	alt_904_upstream	59	51	73	66	59	50	71	56	85	41
GCTCTTCGGATACATG	alt_904_upstream	133	52	173	161	64	142	52	128	58	133
ATCTACGAAGGGTCCC	alt_904_upstream	8	6	12	12	5	6	9	16	9	8
CGAGTCCCTATTTCGT	alt_904_upstream	971	433	1156	1003	438	922	425	908	470	848
ATCAGGGAGACGATCG	alt_904_upstream	13	5	22	15	7	16	6	8	3	15
GCAATCATCACTATTC	alt_904_upstream	20	5	25	21	10	24	6	20	9	16
AGTGTCATCCTCTCGA	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCATTTTGGTTCG	alt_904_upstream	176	75	199	186	83	130	79	174	106	146
AATTTAACATTCCTGG	alt_904_upstream	51	31	75	66	36	46	32	44	33	51
CGAGTCACTATTTCGT	alt_904_upstream	0	0	0	0	0	0	0	1	0	0
TCAGATTCTTACGTAC	alt_904_upstream	140	79	190	162	62	137	90	145	73	123
AGCCGCCAGGATTCTT	alt_904_upstream	38	8	27	26	7	20	9	23	11	23
ACTGCAAAACCATGCT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TGCATACCCTGGATTT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
CGACATTCGGCCGGGT	alt_904_upstream	0	0	0	0	0	1	0	0	0	0
CCTTGGTTCTCTAGTC	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTGAGACGCACAT	alt_904_upstream	24	14	29	42	12	30	12	27	18	26
TATCATCAAGGTTACA	alt_904_upstream	24	4	28	24	11	32	8	16	10	20
TTTCGAAAGATGTGTG	alt_904_upstream	57	24	56	54	29	30	27	40	24	34
TCTTGTTACTATCGAA	alt_904_upstream	123	50	111	98	46	93	51	88	58	74
GTAACGTGAGACTCTT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTGCACTTTTCT	alt_904_upstream	58	42	68	62	22	44	36	67	25	44
CTAAGGTAATATGTAT	alt_904_upstream	112	58	143	108	37	112	58	116	53	129
GTAGTTGGAAGCTTTT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGCTATAGTTGGT	alt_904_upstream	129	46	153	144	59	114	51	110	57	102
GAAACTGGAAGTTTTC	alt_904_upstream	728	324	789	726	294	639	342	677	393	616
ACGCATCCACACTCAA	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGCGATTTACTGG	alt_904_upstream	76	31	76	79	35	75	28	58	24	49
CATCGCGACAGCGAGA	alt_904_upstream	37	17	60	49	25	32	23	38	36	56
TTGGTCAATGCACAAG	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
AGGGACGGTCCCCCCC	alt_904_upstream	2	1	1	2	1	1	1	4	1	6
GAGGTCTTCGTCTCTG	alt_904_upstream	146	57	205	175	89	161	76	151	85	139
CCAAAGTGGAGAGGTG	alt_904_upstream	121	48	134	143	41	112	59	133	54	110
TTCGGCTCTAAACCCG	alt_904_upstream	16	7	16	16	3	26	13	18	11	15
CTAAAATCCGGATTCG	alt_904_upstream	166	70	213	166	59	150	84	187	73	165
TGCGAATTATCATAAG	alt_904_upstream	36	18	69	29	20	39	20	36	22	37
AACTCCTGATACCCCT	alt_904_upstream	30	19	18	25	10	21	11	32	15	22
CGTTTGCTATTATCTA	alt_904_upstream	61	27	71	69	33	57	24	66	33	58
CAATAACTCGTTGCGG	alt_904_upstream	122	48	178	162	81	143	58	135	58	121
CGGAAGGGGTCTCGCG	alt_904_upstream	278	127	402	316	119	285	117	315	101	264
CACCGCATCTTTACGT	alt_904_upstream	67	43	104	87	51	85	47	68	36	63
TGATCGTTCCCTTTCT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTGAGCCAATCAG	alt_904_upstream	26	12	25	24	25	21	22	21	15	20
TAACCCTGTAATCTCC	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCCCGCTTCTGGA	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTAGAATTATTAT	alt_904_upstream	77	37	102	79	40	95	51	82	62	73
CTGTACTGTAAGAATT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
CATTACAAAACGAGTC	alt_904_upstream	156	76	256	180	84	168	81	193	100	173
TTTTGTCGCGAAACGA	alt_904_upstream	16	15	30	30	9	17	10	30	8	28
CCCAAGCCCTATCTGC	alt_904_upstream	1	5	5	0	7	3	2	1	10	0
TTCAGAAGACAACTAC	alt_904_upstream	47	20	81	41	18	37	23	46	27	41
AGCGAGCTTTTGGTTT	alt_904_upstream	0	0	0	0	0	0	0	0	0	0
TACTATGTTTTGGGAT	alt_904_upstream	60	27	82	58	28	54	48	50	31	52
TCTTTATGCCAACTGA	alt_904_upstream	100	31	109	70	31	68	31	83	30	64
TAGTGTTGCGCCTCCA	ref_6080_new	22	3	27	16	6	22	11	20	16	14
TAGCTCATAGTTGTGT	ref_6080_new	71	44	90	76	45	58	50	74	64	73
CTATTCTACAATAGCG	ref_6080_new	163	112	190	158	124	146	117	140	102	140
TGTCACATCGTTGTTT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TAATTCCACAGGGTGT	ref_6080_new	23	15	33	31	20	20	17	28	29	19
CGTGTATAACTTTTTT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TTTTGGTCAACCTGTA	ref_6080_new	89	98	96	65	85	70	92	58	111	73
GTAATGAAATCCCCCC	ref_6080_new	17	5	21	23	15	15	9	21	8	14
TTTGTCAGTCTATCGC	ref_6080_new	57	26	67	66	51	36	33	44	52	39
TGTTCTTTGCCTGTCA	ref_6080_new	0	1	2	1	2	2	0	3	2	3
GTATGGGTTGGACGTC	ref_6080_new	101	75	120	108	64	93	83	98	62	93
TATGGCCCGGCTGTGT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
GCCCCTTCATCACTCG	ref_6080_new	122	76	152	122	97	142	104	132	75	114
GTTTCTGCCACGTTTC	ref_6080_new	24	15	39	30	13	26	25	21	19	30
CGCTGTCTTATACTTT	ref_6080_new	82	42	77	48	52	42	52	64	46	60
TTAGCGGGTTGAGAAG	ref_6080_new	13	7	16	12	3	8	13	7	7	12
CCTACATTAGCTCTGC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
AGCTTAGTTGCTAAGA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TTTGTTATTTTGGATC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CTAAGGATTAAACCAC	ref_6080_new	31	20	64	35	13	28	14	43	27	28
CAATGGTTGTTCCAGG	ref_6080_new	171	110	219	194	131	167	120	156	147	173
TATCGCAGTGATACGG	ref_6080_new	24	14	25	27	10	16	17	15	20	12
ATTTTTGACCAATCAG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
ACTTGTCCGCATGGCT	ref_6080_new	36	19	51	43	21	39	19	35	24	35
CTATGTTCAAGGTTTT	ref_6080_new	41	22	37	40	21	31	27	24	20	28
GACTGTCCAACCGCAT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
ACGTAGTGTATTATGT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TTTAACGGACTACTAT	ref_6080_new	50	21	55	41	27	35	15	33	37	47
CGTGCGTAAATTAAGG	ref_6080_new	3	3	9	9	2	8	2	11	2	6
CGGTCTGCTATCTTAA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
ACTTCCTAAGTAGAGT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
AGATAGGTGCGCTATG	ref_6080_new	18	18	20	15	13	17	12	22	10	26
TCGTATTGTAGTATTA	ref_6080_new	67	38	77	59	33	60	44	47	37	47
ACAAGAAGAATGCGTG	ref_6080_new	37	22	57	41	21	23	14	40	30	28
CGCCGTCCAACTTTGC	ref_6080_new	41	48	31	35	54	41	49	36	60	31
ACCGGCATAGGGGTGG	ref_6080_new	13	8	24	31	7	10	15	14	16	13
TTTCATACCGACCGAA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
GGGCAGACACATACCG	ref_6080_new	36	29	54	33	28	48	13	41	33	30
AATTCGTTTCGATAAC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CATTCTTGTCCGGGGT	ref_6080_new	161	96	217	152	111	155	101	160	116	157
GTTCAAGACCTTACTC	ref_6080_new	137	81	166	127	80	139	92	101	81	105
CTTTCACTAGGGTTCT	ref_6080_new	137	84	169	139	102	114	90	112	101	123
TGGGAGGTGATTGTGC	ref_6080_new	36	36	45	33	29	41	24	60	29	33
CAATTGATGGCTGCGA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
AGTGTTCTGAGACGCC	ref_6080_new	131	108	197	159	119	162	100	153	113	130
GCCGTCCTTAGAATCG	ref_6080_new	17	14	26	26	13	22	20	12	15	23
CTTCCATTAGCCTCAA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CTCTCTGAGCCCTGAA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
AGCTAATTTGGGTAAT	ref_6080_new	37	28	56	35	18	38	24	35	34	33
GGGCTGCGCCCGGGCG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
AGAAGAGGAACTTTTC	ref_6080_new	52	34	52	50	28	40	23	37	37	40
GCGTTTGTCGTAGCAG	ref_6080_new	77	36	74	76	59	75	53	58	62	66
TCGGCCTGGTTTCGGT	ref_6080_new	13	6	5	7	2	12	4	3	5	6
TTCGCTTACAGGATGA	ref_6080_new	8	5	5	3	3	8	7	3	6	8
TGCAACTGGATACTCG	ref_6080_new	107	76	138	118	74	92	79	119	53	76
TCTCAACCCGTTTCGT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
AATTTCCATTTTTCCA	ref_6080_new	6	1	4	9	3	10	4	4	1	7
GGCGTCATATAATGGA	ref_6080_new	56	35	62	54	23	54	40	43	21	45
GTGGCTGTAAGTTTAA	ref_6080_new	41	33	56	46	32	41	35	50	44	51
ACTACCTCGCCCCGGC	ref_6080_new	104	72	129	120	63	86	53	90	54	86
CATAGAAACGTTTATG	ref_6080_new	38	24	41	48	22	30	15	26	29	42
ACGGAGGGAGCCTTCA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
GTATAGCGTTAATGAA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TGTAATCGTAACAGCA	ref_6080_new	22	13	31	26	24	27	16	40	28	17
CTTCGTCTGTTGCGAA	ref_6080_new	11	2	6	6	9	6	6	8	8	3
AGCTTGTATCCGCAAC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CGCGTGTGTGTTTTGA	alt_6080_new	14	8	20	19	12	18	10	11	11	21
CTGGCCTTATCGTTAG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CTCGAAAGTCTACGTA	ref_6080_new	42	30	39	50	17	53	42	35	30	37
AGTCTGGGTTAACCGT	ref_6080_new	64	59	77	61	48	70	54	59	57	71
AGCTAATTTTTGGTTT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CGGCCGCATACTCTGC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CCGCTTTGTGTTACGG	ref_6080_new	28	10	21	20	8	20	14	14	17	12
TGAGAACGACAAGCAT	ref_6080_new	14	14	21	26	10	15	10	9	18	21
GCTCACTCCCTACGGT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
ATCCCGATTCAAGTAA	ref_6080_new	21	11	29	13	6	12	5	18	10	12
CCCTTGTTCTTCAAGT	ref_6080_new	94	95	153	109	58	96	81	124	84	100
TTGGCGTCGTCGGGCT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CCGAAGTTACTTGCAT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TGCGTCACAGATTACT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CTTTGAGTCTGTCGAC	ref_6080_new	10	10	17	12	16	16	8	12	18	12
GTCCTAGTAGGTGTTT	ref_6080_new	29	18	25	20	11	18	16	19	22	21
TTACCATAATGACTGG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
GCGATAGGGTCTCGGT	ref_6080_new	94	70	107	83	46	73	62	83	51	88
GGTCAGTGAACCTTCG	ref_6080_new	36	17	51	35	8	20	18	23	15	21
GGCGTCCGCGCATCGC	ref_6080_new	50	23	57	38	27	44	38	45	31	32
CGGATTTTCGTAGGAC	ref_6080_new	88	42	115	115	64	73	80	93	66	77
CAGTCAAACTCGTTAA	ref_6080_new	24	9	17	14	7	13	20	18	16	18
TTTTCCCACTGACTTG	ref_6080_new	31	11	22	18	14	11	13	17	18	21
ACATGGCATTCATTAA	ref_6080_new	0	0	0	0	2	0	0	0	0	0
GCCAATCCAAGTAAGT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
GGTTAAGTCTACTCCT	ref_6080_new	2	2	4	3	0	6	4	5	0	3
CCTTGATCCGAACCTC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TGGATCCTTTTTGGGC	ref_6080_new	8	6	11	11	11	8	6	7	9	8
CGCAAGGGTTGATTTG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CATCAACGCTTATCTG	ref_6080_new	10	15	8	13	8	11	5	6	10	7
TACAAATCGGGTGTAG	ref_6080_new	13	4	15	15	13	9	10	15	8	13
TATACTGATTTATACA	ref_6080_new	7	6	13	9	8	10	6	6	7	8
ACAACGTCGCGTTATG	ref_6080_new	30	18	26	33	17	18	13	22	26	12
GTCAGGGGCTCCTATG	ref_6080_new	104	58	119	111	79	113	81	88	56	94
AGGTGCGAACATTGTT	ref_6080_new	7	4	11	11	4	7	6	12	7	7
TACGCTTAGCTTTCGA	ref_6080_new	114	56	121	113	70	128	66	108	45	110
TGGACGCTACGAGCGG	ref_6080_new	12	16	28	31	11	16	17	31	18	23
GGTGGCACCAAGTATT	ref_6080_new	144	96	187	153	88	151	92	126	102	147
TACTCGAGGCGACTGA	ref_6080_new	99	62	93	97	62	65	56	87	64	74
TTGCTCCCAAGCCTCT	ref_6080_new	61	32	77	58	50	57	43	60	51	57
CAGTTGGTTCTAGGTG	ref_6080_new	42	36	43	51	38	41	41	41	39	42
GCACTAGGGGCTGCCC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CCCTATTTCGGTTCGA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
ATTCATGGTACTCTCC	ref_6080_new	38	43	57	33	41	37	32	34	25	33
CTGATGATCCAGATGC	ref_6080_new	29	12	15	17	12	23	13	10	12	15
CTAAACCTTTCTTGAA	ref_6080_new	31	18	23	19	21	30	17	43	23	26
AGTGCTTGCCTAGCTG	ref_6080_new	82	59	104	78	67	75	59	93	71	69
GAGGGGAATTCTACTT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CGTCTTGTATCAGGCC	ref_6080_new	50	36	78	48	48	51	28	83	40	45
CGTCTCTACTGGGATT	ref_6080_new	50	36	71	49	32	53	37	65	24	38
TGCGGCCTTGCATATG	ref_6080_new	47	24	47	31	37	21	25	41	40	35
CTGACAATTGGGTTCT	ref_6080_new	107	75	119	84	72	100	65	100	82	78
TCAACTTCCATATCTC	ref_6080_new	48	40	47	44	34	44	37	45	31	38
CAAGCCCGCTCTGCTT	ref_6080_new	0	0	0	0	0	0	0	0	0	0
CCAGATCCGAGATTTA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
ACGCACAACCCATATG	ref_6080_new	17	13	24	23	20	23	24	20	22	29
TGGTTGATAGGGCTTG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TTGTCCAGCGTTATTC	ref_6080_new	0	0	0	0	0	0	0	0	0	0
GTTACGGATAACCATG	ref_6080_new	25	22	39	15	29	22	16	15	42	27
CCCCAGATGCAGGCTA	ref_6080_new	0	0	0	0	0	0	0	0	0	0
AATATATCCCTCTGAG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TTATAAGTTGTTGGGC	ref_6080_new	46	28	61	51	36	52	35	44	42	44
TAAGACTATTCGGATC	ref_6080_new	30	17	23	40	18	20	17	27	9	17
TATCTTACCCACTGTG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
TTGTGAGATACATTCG	ref_6080_new	1	1	1	1	1	1	0	0	1	0
CCAGATTGTAAATTTG	ref_6080_new	17	13	19	20	15	15	19	11	17	12
TTTAGAGCGTGGAATT	ref_6080_new	25	18	31	24	20	24	22	32	21	23
ATTTGCTTGCAACACC	ref_6080_new	112	59	112	111	36	89	77	84	60	81
TCGCCTGGTCGCACGG	ref_6080_new	47	24	45	21	24	21	21	30	24	16
TACACTTTGACACATG	ref_6080_new	46	47	90	64	26	55	42	57	45	64
ATTGCCCGCATAAACA	ref_6080_new	69	50	89	80	59	78	57	74	63	73
AGAGTTTATTCCCGCC	alt_6080_new	43	26	58	47	27	57	25	38	32	40
GCTTTTTATTCAGGGG	ref_6080_new	0	0	0	0	0	0	0	0	0	0
GGGCGGCCTTCCTTGT	ref_6080_new	5	3	13	7	0	5	4	3	6	8
ATGCAAGTATTTCAGA	ref_1363_upstream	658	346	744	654	357	590	429	536	391	546
GTCGTCTTTTAGGTAG	ref_1363_upstream	36	20	49	42	27	29	20	40	12	33
AGATTAGCCTTTCGTT	ref_1363_upstream	123	81	167	130	79	89	53	96	79	112
CATCCCGTGGGTACGT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
CGAACACTGAGGCTGT	ref_1363_upstream	218	132	301	280	123	241	139	201	137	223
GAATCGTACGTTTTTC	ref_1363_upstream	60	56	84	59	64	48	37	61	65	69
ATATTCGGGAGTCCGG	ref_1363_upstream	20	10	19	13	6	12	6	18	7	14
TCGTGTCGCCGCATAT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTACTATTTTTCT	ref_1363_upstream	178	97	232	201	108	178	99	214	99	137
TGTCGGCGAGGAGTCC	ref_1363_upstream	174	93	175	189	86	155	106	143	109	141
TTTGTCTGCGAAGCTG	ref_1363_upstream	92	36	81	99	52	62	35	63	49	46
ATGCACCAGAATGTCT	ref_1363_upstream	45	15	42	24	14	30	18	28	22	40
AGCGTCTAACCGCGAT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTGATGATGCCTT	ref_1363_upstream	20	12	17	23	19	27	13	35	21	14
TTTTTGGCACATAATT	ref_1363_upstream	88	58	108	90	37	94	49	108	77	86
GCGGAAAAGATGCGGC	ref_1363_upstream	109	67	128	120	93	127	72	127	83	103
CCAAGGCTTATCCCTC	ref_1363_upstream	18	7	18	25	11	21	19	18	13	24
GTGCCTTCCCGTTCCA	ref_1363_upstream	68	33	83	86	43	63	31	71	45	68
CTAAAGATTTATTTAC	ref_1363_upstream	34	20	44	41	24	36	29	30	17	48
GTGTACCTGGTCTTTA	ref_1363_upstream	11	9	14	13	10	12	9	15	10	17
AGAATCTAGAACAGTT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTTGGTGCCTCAA	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
TCATATATCACACACC	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTCACTATACCAT	ref_1363_upstream	29	17	34	23	9	25	11	17	13	26
CCTCAGAATAGGGACT	ref_1363_upstream	54	31	58	52	26	43	29	38	27	49
ACACTACGTGGGACTC	ref_1363_upstream	40	36	53	56	29	28	31	39	25	42
ATGAAGGTCATGGGAA	ref_1363_upstream	237	136	316	259	130	211	127	230	147	235
TACTCCTTACGTGTGT	ref_1363_upstream	18	17	11	15	15	18	11	19	18	24
GACGCCAGTTTGCGGT	ref_1363_upstream	18	5	26	23	15	17	7	7	11	13
GCCAAGCTTTCGGTTA	ref_1363_upstream	66	40	77	85	54	82	50	56	43	66
CCAGGAACGACGGTTC	ref_1363_upstream	98	80	136	115	72	96	88	94	87	97
CCTGATTAGTCCTACC	ref_1363_upstream	62	47	107	109	75	76	62	75	65	74
CAGCTATTCGAAACAG	ref_1363_upstream	13	13	8	9	10	11	9	6	19	10
CCTTCGGCCCATCAAA	ref_1363_upstream	68	63	121	85	64	87	55	85	78	63
TTAGTTGATCAGCGCT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGCATGATAGAAT	ref_1363_upstream	39	33	73	67	30	45	43	45	42	39
ACGACCCTTCGTTGTC	ref_1363_upstream	41	28	66	57	18	56	28	36	15	41
CAATCGGCTTACATCG	ref_1363_upstream	3	2	2	3	1	4	2	3	2	3
GTAAGTGCACTTGGGT	ref_1363_upstream	38	23	36	36	16	33	19	20	26	34
CGTTCACTCCTTAAGC	ref_1363_upstream	18	14	20	17	13	12	19	19	14	9
CGGCCATCATCCCGGG	ref_1363_upstream	362	181	413	370	162	292	176	369	187	300
AGCGCCTCGGGTCATT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGAGAGTTGTAGA	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
GACCGAGGCCCTAGTA	ref_1363_upstream	16	7	14	19	5	11	5	13	8	10
GTGTAACGGGTCTTAA	ref_1363_upstream	8	4	7	5	0	2	2	4	2	4
GTCTCAGTCATTGCTT	ref_1363_upstream	21	11	24	18	19	14	15	12	21	19
CGTTCTATACCTGTTG	ref_1363_upstream	4	2	3	4	0	5	0	4	6	3
CCCTCCCGCATAAGAT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCACGAAATCTAT	ref_1363_upstream	4	1	2	3	6	4	1	4	3	7
TGGACGTGTAGCAACT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
AGACATTTTTTCTTTG	ref_1363_upstream	217	100	229	196	104	206	103	179	115	168
GAGTAGCACCTCTAGG	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
CGCACCGATTTTTCAT	ref_1363_upstream	7	1	14	7	6	10	5	9	13	9
TCTTAGCCGTTTGCGG	ref_1363_upstream	47	42	54	38	47	53	32	56	41	43
ATCCTTGGTTCCTTCG	ref_1363_upstream	1	1	1	0	0	0	1	1	2	1
AGTGTCAATTACTGAT	ref_1363_upstream	29	17	38	19	17	24	12	30	24	38
GTCGCTGCTGGTTCTT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
GACCCCATGTATTCCC	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
GTCTACCTAGTGGGAG	ref_1363_upstream	101	53	108	93	54	73	50	89	49	86
CGTCATAGCCGTACAT	ref_1363_upstream	64	37	97	72	30	78	36	64	49	49
GTACTTGAACCTCATT	ref_1363_upstream	28	12	39	33	16	17	18	24	26	18
TGGGTGCAGGCATGAG	ref_1363_upstream	141	78	176	136	77	130	94	118	97	125
TACACGTTTCTTGGAT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
TATTTCATCTGTAAGC	ref_1363_upstream	89	70	78	88	57	55	40	93	64	83
CCCGGATATTATCTGT	ref_1363_upstream	16	14	33	24	18	15	18	22	17	25
AGGTCCTAGCCTCAGA	ref_1363_upstream	88	57	118	104	88	92	66	88	65	79
TTGAAAATACAATATA	ref_1363_upstream	103	52	93	94	57	69	60	85	59	75
CTCACAATTAGGATTT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCCGGCGCACAGG	ref_1363_upstream	4	0	6	3	0	3	6	2	2	3
GCGTTTCATAGCGTTA	ref_1363_upstream	63	27	65	52	38	56	51	53	44	43
TTGCTGTACAGTACAC	ref_1363_upstream	52	37	74	76	45	65	37	62	39	71
GAAGCCCGTAATTTTG	ref_1363_upstream	45	40	76	52	24	45	39	53	32	37
TCGTCTAACTGCTTTA	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGCGTACGTACTC	ref_1363_upstream	58	27	53	44	31	20	29	36	34	39
CAGCTACAGTATAACT	ref_1363_upstream	16	5	18	7	13	22	6	15	16	14
CCAGACTTTTCTCGCT	ref_1363_upstream	51	39	74	56	35	54	38	43	54	59
GCCCAAGCTTACAACT	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
CCCCTCGCATTGTCTG	ref_1363_upstream	61	37	61	44	45	60	46	47	39	49
CACATCCTAATCGCCT	ref_1363_upstream	32	16	58	36	19	23	20	30	28	16
TCGAGCGACCTGCTAA	ref_1363_upstream	45	34	53	49	22	43	37	38	26	30
GAAGGCTCAGCCGTGC	ref_1363_upstream	5	4	3	5	3	7	6	8	5	8
TGTAACTCTTGGATCT	ref_1363_upstream	120	69	175	164	107	130	83	131	82	131
TCCGTTCCGATTGGGG	ref_1363_upstream	194	119	266	207	129	184	111	182	135	179
TTTTCTGCCAAGATCT	ref_1363_upstream	195	88	252	191	97	190	87	172	119	162
TTTCCAATTGTAACGC	ref_1363_upstream	7	5	6	10	5	12	5	10	7	6
CGAAAATCCGGTGAGG	ref_1363_upstream	48	19	49	38	29	18	34	35	19	34
TGTGAGTGCCCGAACT	ref_1363_upstream	132	69	174	136	85	147	73	125	108	136
TTCATCCCGTATACTT	ref_1363_upstream	32	17	33	39	21	25	25	34	23	19
GCCACCATACAGCTAA	ref_1363_upstream	64	38	88	66	41	62	60	59	55	67
CCGTTAGTTCAGCTGG	ref_1363_upstream	33	13	27	25	11	26	16	30	17	15
CTGTTGGCTTTCCGCA	ref_1363_upstream	74	51	114	91	35	91	66	91	43	65
ACATTGGATAAGTGTC	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTTACATTGACC	ref_1363_upstream	88	46	101	79	50	72	49	100	54	78
TGCTTGATCCTCTGGG	ref_1363_upstream	185	99	228	219	103	196	109	196	117	171
GTATTGTCTCAGCTTC	ref_1363_upstream	219	164	302	243	157	243	143	230	165	194
TACCGGCGGGTTCAAC	ref_1363_upstream	32	32	50	35	21	41	23	43	18	29
TGGGGAAATATTGCGG	ref_1363_upstream	64	28	80	57	22	51	24	64	38	46
ATCGAACAAGGATGTA	ref_1363_upstream	16	4	13	18	7	17	9	12	7	11
CCGAATCTTCGTAACA	ref_1363_upstream	99	39	100	84	38	72	43	64	58	82
AGGCGTGCTTATTTAT	ref_1363_upstream	41	19	41	42	18	32	15	39	12	33
TACGTTATGTGTGTTA	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCGTACCTCTTAG	ref_1363_upstream	73	49	76	52	47	60	34	68	34	44
TTGATCTCGGACCCGG	ref_1363_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTTGTTTCTATTG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTCTCAGGAGGCT	alt_2205_upstream	14	2	28	30	18	11	11	19	8	22
CTTCATGTGATAAATA	alt_2205_upstream	0	0	1	0	1	0	0	0	0	0
TTACCCATGAGATTCC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGTGCTGTGTAAT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCTTATGCTACGT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GTATGGTTATGCGAGA	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGTGTATAACATG	alt_2205_upstream	6	0	1	2	0	3	0	4	4	2
AATAGGATCTATTCTA	alt_2205_upstream	65	25	68	46	35	45	31	44	26	54
TCGTATGCGGGTTCAT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TATTCGCTTCTCCGTG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GATGTAGTCAGCGGCG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCACGCGATTTTC	alt_2205_upstream	64	31	82	64	36	60	34	43	34	60
GGCACTTCATTGGAGG	alt_2205_upstream	62	28	60	57	36	62	25	51	34	42
AGTAACCACGTAAGAC	alt_2205_upstream	21	14	20	32	18	25	4	24	17	21
AGCCCGTCTCGGCCAG	alt_2205_upstream	12	15	18	27	7	14	6	8	12	19
ATGATTCAGATTTGGT	alt_2205_upstream	79	48	110	97	31	79	55	75	69	94
TCTATGGTCACTCTGC	alt_2205_upstream	19	14	42	20	20	36	17	39	18	23
TTATGTTTATTTTTCA	alt_2205_upstream	130	95	172	154	70	128	74	109	92	97
TCCTTCGTGGCTAACG	alt_2205_upstream	25	24	18	28	19	27	26	18	37	14
AGGGAGAGTGCGACTC	alt_2205_upstream	25	5	34	36	17	30	21	32	10	25
GTTGGTGTTATGCATG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
CACCGGTAAACACTGT	alt_2205_upstream	30	35	44	35	49	30	54	30	47	21
CCTCCACATACCCGCC	alt_2205_upstream	96	93	123	107	69	104	103	86	107	93
GGCATGTAGTCGTTCT	alt_2205_upstream	16	3	25	15	12	16	7	24	9	11
CTATGGATTCACAACG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTTTGATCTTGGG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTCTAGAACTACA	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GCGCAATCACGATTAC	alt_2205_upstream	274	139	346	294	156	246	144	259	145	249
CTCCCCTCAGCGGATC	alt_2205_upstream	30	47	61	50	43	29	32	36	31	35
TTTGATGCTTGGTTCG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GCGTACTTTGGTTCCC	alt_2205_upstream	71	47	79	66	36	62	48	62	36	58
CACAGATACCAGGATA	alt_2205_upstream	104	51	122	116	76	97	65	105	62	102
TGTTTCATTGGCAATC	alt_2205_upstream	55	29	88	65	26	44	32	49	42	44
AGCTAAGTGTACTCAG	alt_2205_upstream	27	11	36	38	11	24	14	26	12	32
TCAGGATTCGTTCCGA	alt_2205_upstream	48	19	38	44	20	47	15	28	24	31
TGTTTCTTTAGGCCAT	alt_2205_upstream	107	62	123	117	65	105	68	101	62	117
CGAACAGAGGTGGTCT	alt_2205_upstream	17	19	19	16	11	17	20	20	15	10
TGTATTTCAGAGCAAT	alt_2205_upstream	42	25	56	58	32	51	30	52	22	37
GGAATATGATCACCGC	alt_2205_upstream	0	0	2	0	0	1	0	0	0	0
TACATTGACGGTCAGA	alt_2205_upstream	69	40	96	60	30	72	38	62	45	67
TCCGAGCAGACGGCCA	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
AATATTCTTTATCGAA	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGAGTACTATGTA	alt_2205_upstream	37	23	44	30	19	30	26	32	26	29
AGCCCTGCTTAGTTGT	alt_2205_upstream	54	32	76	73	37	60	46	70	42	63
TATTGGAGAAGCGCGC	alt_2205_upstream	52	29	61	52	23	47	33	59	27	51
GGCTTTTTTACCTTTA	alt_2205_upstream	10	10	25	13	4	14	10	19	5	13
TTTGCCTTGTTAACTC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
AGGCCCAGAACACTTC	alt_2205_upstream	41	25	52	44	20	57	25	44	31	25
GAAGGTTTGCTGCAAC	alt_2205_upstream	166	117	211	200	76	189	118	160	91	171
GACCTTTTCTCGATAC	alt_2205_upstream	53	27	63	41	26	38	34	45	43	45
GTCAGCTCTCAAACGC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TATGTGCCTTTCTATA	alt_2205_upstream	24	8	37	28	12	27	3	26	16	23
GCACATGACAGCCGAC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTTTTCAAAACCG	alt_2205_upstream	14	6	17	17	9	10	10	29	8	16
GTTTAAACTGATTTGT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TAAAAGAGTACTTCTC	alt_2205_upstream	37	36	34	25	38	28	47	41	37	28
GCGTCGCACGTTGGGT	alt_2205_upstream	122	74	123	147	68	121	87	112	49	97
TGTATAAACCAGAAAA	alt_2205_upstream	87	49	105	95	38	84	58	75	30	88
GACTTCAAACCGTCAT	alt_2205_upstream	13	7	19	16	11	20	11	16	12	12
CTAGATATGTACCTGG	alt_2205_upstream	2	0	4	1	0	3	0	2	1	1
CTTGTCTTTCCGGCGT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGCACAACTTGGG	alt_2205_upstream	10	3	13	12	1	7	3	4	1	6
CGCTCGGTTTACTATT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
CGGACTCAATAGTTAC	alt_2205_upstream	299	170	346	333	173	318	194	313	183	264
GGCGCGTTAATTTTCC	alt_2205_upstream	56	15	50	45	16	38	14	31	17	30
CTAACATGCTATAGCA	alt_2205_upstream	147	103	202	170	84	139	114	147	110	131
GTCTGGCTGGCGTAGT	alt_2205_upstream	72	47	72	66	42	73	37	67	47	62
CGTTATATTTTAGCGT	alt_2205_upstream	0	2	4	6	2	1	0	3	3	7
CTCCCACCCATTATTC	alt_2205_upstream	65	45	66	85	36	46	37	70	37	53
AGATACCGCATATTAT	alt_2205_upstream	118	56	121	97	57	107	74	119	63	97
TATCCAACAACGGCTA	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAAGTCTCGCCGT	alt_2205_upstream	64	44	94	99	39	77	55	60	43	66
TATCCTTCGCTGCGGC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
AAATAAGCCTAGGAAG	alt_2205_upstream	7	1	2	3	1	4	1	2	1	6
TCGTGCATAGTCCCAT	alt_2205_upstream	17	11	30	36	14	18	5	20	7	13
TATCCGCATCGGATCT	alt_2205_upstream	39	9	31	42	22	25	26	38	27	23
AACAATCGGCCAAGGA	alt_2205_upstream	99	50	101	103	55	105	39	114	47	88
CTTCTCATGTCACGGG	alt_2205_upstream	10	1	10	11	7	9	6	8	3	10
ATCCGTAGCCGATTTA	alt_2205_upstream	10	4	16	12	6	14	10	13	13	12
ACGCCTCTGACATTGT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
ACGCGCATCCTGAGCA	alt_2205_upstream	50	28	58	40	21	52	23	47	17	49
TTCGGGTCCTTGCTCT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GTTGAAGTGCGGTTTT	alt_2205_upstream	137	85	171	158	80	131	81	112	76	133
CTGTGTCGGGGTGTAG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTTACTCGCCTCC	alt_2205_upstream	21	12	30	23	12	22	11	20	16	22
AGAGGCGGGTTGCAAA	alt_2205_upstream	15	11	15	12	6	17	6	18	11	8
AACTGGGGTGCGCCTG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GTACCTGAGTATTCGC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTCTTTCTGCTA	alt_2205_upstream	18	13	10	16	20	7	18	21	27	11
TAACTGTCACTTAGTA	alt_2205_upstream	107	76	144	122	58	77	57	77	60	98
ATTTGTACAGAACAAT	alt_2205_upstream	112	55	97	107	51	113	69	107	57	86
TCCGGAGACCACCTCT	alt_2205_upstream	198	115	268	218	117	232	134	167	127	199
GAAGATCGTTTAGATT	alt_2205_upstream	18	5	24	24	6	15	3	16	6	6
ACATCGGTACGCGCCG	alt_2205_upstream	16	7	19	11	13	16	15	16	11	14
ACAAAATATTAGTCTG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCCTCTCGATTCT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GTCGGCTGCCGTTGTC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCTCGTCTTAAAC	alt_2205_upstream	25	7	38	30	9	29	21	21	18	19
GCAAATGGCCTCCCTT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCGCCATGGAATC	alt_2205_upstream	6	4	11	6	3	5	5	7	6	4
GTCTGATCCTACGTCT	alt_2205_upstream	156	92	184	163	83	154	73	148	75	148
CTAGTTGGGATCAATA	alt_2205_upstream	79	57	88	93	68	95	71	77	55	76
TTGCACCGTAATAATA	alt_2205_upstream	51	32	86	69	24	44	33	55	43	53
AGATATACATCGAAGT	alt_2205_upstream	12	12	22	25	12	21	12	24	6	17
TAGAATTCTAGTCGAG	alt_2205_upstream	58	36	43	66	32	48	21	66	20	44
CTCATGTCGAATGCAG	alt_2205_upstream	70	41	91	87	42	66	50	60	52	63
AAGAGATGTGATCCGC	alt_2205_upstream	13	11	20	21	9	13	13	15	8	19
GTCTTCTCCAATCGGC	alt_2205_upstream	67	30	108	77	50	73	47	63	47	60
CTCATCAGAACACCAC	alt_2205_upstream	262	141	310	294	151	242	160	292	158	231
TACAAGGGATGGATGA	alt_2205_upstream	38	21	56	44	18	44	25	51	28	36
CTCTGGCACCTTGTTA	alt_2205_upstream	125	75	155	138	64	117	69	116	76	92
TTGGCCAAATACTACG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCTTTGCTTTCTC	alt_2205_upstream	25	16	45	28	9	31	11	31	12	20
TTTGCTTCTTTTACGC	alt_2205_upstream	334	220	385	383	192	308	200	323	178	283
AAGGCATCCATGGGAC	alt_2205_upstream	100	47	78	116	56	72	48	83	53	84
TCGTTACATTTACCAC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
ATCACCCTGGTTGGGT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
AACTGTATCTTGGGTC	alt_2205_upstream	109	62	151	151	47	129	56	105	59	96
CTGACTTTGCTATCGA	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGGGATACTTAGA	alt_2205_upstream	74	50	96	83	40	66	43	105	62	69
TGACGTGAGTGATCGA	alt_2205_upstream	8	5	15	15	7	13	5	15	7	12
AGTATTCATTAGGTCG	alt_2205_upstream	82	44	109	93	53	120	47	79	55	76
TAATCGATCCCCGTGG	alt_2205_upstream	2	5	1	1	3	1	6	2	5	3
TAAATTACAGTGTCTA	alt_2205_upstream	37	17	54	36	21	29	17	31	14	29
CTCGGGGATACTACCA	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTGGACTGTTACC	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGGCTTTTTGGGG	alt_2205_upstream	39	24	51	32	22	36	20	49	22	26
ACTCGGTATTTGACGT	alt_2205_upstream	224	115	226	166	112	190	110	198	109	169
TGAGGGTATGTTAGTT	alt_2205_upstream	434	215	501	441	199	432	262	313	217	319
GTTTACGAGACTCTCT	alt_2205_upstream	73	20	81	55	30	63	25	49	32	38
GTATCTGTGAGCCCCT	alt_2205_upstream	245	176	386	299	151	275	179	282	187	253
ACCGTGATGCTTCTGA	alt_2205_upstream	10	18	26	21	8	20	12	29	13	18
AGCTACCAAGAATATG	alt_2205_upstream	44	15	40	50	20	39	27	34	18	33
CGTATGAATTTTGTCC	alt_2205_upstream	17	9	19	24	15	17	8	21	15	15
TCTTCACTACACTTTA	alt_2205_upstream	7	1	4	2	1	5	2	5	0	1
GCCCAGTGTAGTATTC	alt_2205_upstream	40	21	42	47	26	36	21	40	26	34
TGTTGGTCATTTGGAT	alt_2205_upstream	56	28	52	48	19	47	25	39	29	34
TAAAACAGAGGCATCT	alt_2205_upstream	27	16	20	33	24	37	20	37	23	23
CCCAGACGTCCCTAAC	alt_2205_upstream	36	17	36	16	13	25	12	23	19	35
AATATGCAGTACCGAA	alt_2205_upstream	26	20	47	53	26	48	24	27	25	40
TTTGACGTTTGAATTC	alt_2205_upstream	15	5	26	20	5	16	17	17	17	10
TTCTTGCCACAGAATA	alt_2205_upstream	158	97	225	235	117	188	126	182	131	164
TAACCGAGTGACCTCC	alt_2205_upstream	120	84	181	178	73	138	93	125	83	126
TGATGTGCCTTCTTTA	alt_2205_upstream	78	47	91	88	36	81	43	100	45	80
CCAACTAAACCCTTGG	alt_2205_upstream	27	40	46	50	33	35	27	52	32	30
GTGGGTGAGCAGTAAG	alt_2205_upstream	74	47	115	101	49	82	54	83	73	82
AACTGCTTATCCATAG	alt_2205_upstream	43	17	56	34	17	34	21	41	16	28
GTGCGTCCACATGAGG	alt_2205_upstream	1	0	2	3	0	3	0	2	0	0
TGCATGTTTTAGCATC	alt_2205_upstream	60	18	55	63	21	64	22	43	43	46
GAGAAACTATTGGGTG	alt_2205_upstream	371	164	406	401	193	363	164	348	209	325
CCCCAAGAACCCGGGA	alt_2205_upstream	55	26	62	49	21	47	29	41	37	33
TCCGGAGCCCACCTCT	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGGCAGCTCAAAG	alt_2205_upstream	9	5	12	5	3	8	8	8	5	8
AATTCTCGGAAGATGG	alt_2205_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGACTCTATTCCG	alt_2205_upstream	40	15	44	22	20	30	19	35	22	33
CGTTTGGTTCAGACAT	ref_2989_upstream	124	87	173	128	69	138	83	113	84	117
AGGATCATCTTAATAC	ref_2989_upstream	568	251	671	616	225	528	223	525	276	465
GCTTGTGCTTCGCTCT	ref_2989_upstream	99	39	164	130	36	78	41	96	36	102
GCATACGTCTTAGGGC	ref_2989_upstream	5	1	12	9	7	5	3	9	5	9
CATGGTCTCTGGTTTG	ref_2989_upstream	574	231	813	631	251	537	230	589	247	507
TCCCGCCAGATCCTCC	ref_2989_upstream	52	28	77	64	50	73	43	49	35	60
TCTTTTCGTGAGTTTC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
TATTGGGCTTGAAATT	ref_2989_upstream	35	10	50	43	11	34	18	51	20	36
AGGCCTAATTACTTGC	ref_2989_upstream	226	70	237	207	75	181	68	203	74	177
TACTGGGCACGTGCAC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CACTTATGGCCCATAT	ref_2989_upstream	39	9	23	22	11	27	16	19	7	20
AATAGTTACTTATTGT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGAAGATGGATTG	ref_2989_upstream	49	11	38	40	12	23	14	29	10	33
ACACTTCGCCGCGCAG	ref_2989_upstream	12	1	13	9	5	6	9	10	8	10
ATGCTGCGGGTGATCA	ref_2989_upstream	160	46	196	150	61	153	70	162	67	134
CCGGATTAAAGATATT	ref_2989_upstream	16	14	13	13	14	20	17	20	10	14
TAATGGCGGAACCTGA	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CGGACGATAAATTGGA	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
TGTGAAACAAGTTCCC	ref_2989_upstream	61	23	87	59	21	69	22	52	28	69
AGCAATCCTCGATCTG	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTGGGGATTATAC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTTTCTTTAGATT	ref_2989_upstream	55	19	70	57	24	62	27	47	27	61
ATAGCAGATCAATTCC	ref_2989_upstream	50	12	66	48	22	53	21	55	36	34
GGGTCCGGCACATGAT	ref_2989_upstream	36	14	44	41	17	35	11	29	17	34
GCGCACCTAGCTACTG	ref_2989_upstream	321	151	423	370	185	337	151	280	187	295
CCACTTTTGGTTAGCT	ref_2989_upstream	52	35	60	64	27	65	24	40	23	59
CGTACACAGCCGATCT	ref_2989_upstream	13	8	10	15	8	9	5	19	5	7
GCTAAGTGCTGTTTAC	ref_2989_upstream	99	50	151	153	56	108	46	98	51	119
TCCTAGAACAAGGTCT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GATGGCGCCGTTTCTG	ref_2989_upstream	162	60	200	193	77	173	82	170	76	169
AAATCAGGCAAACACC	ref_2989_upstream	97	35	146	98	30	98	47	100	40	95
GTAAGTTCCGAATTTT	ref_2989_upstream	194	76	197	182	71	172	78	179	75	166
GATGCTTAAGGATCTC	ref_2989_upstream	77	42	86	92	26	71	25	73	41	79
ACTGCCTTTTTACTGC	ref_2989_upstream	37	9	34	41	11	26	13	30	18	22
CCTTCTTCTTTGACAT	ref_2989_upstream	64	33	78	69	48	74	27	57	41	49
TTCTCACAAAGTTCAT	ref_2989_upstream	278	114	304	298	125	276	118	282	108	265
ATGGGCTCGACGTTGG	ref_2989_upstream	106	60	142	123	36	118	60	81	57	110
GCGCATGCCGCGGCGC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
ATTACAATTAAATTCA	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTTATATTCGAAT	ref_2989_upstream	64	48	83	86	48	58	45	74	56	38
CACTGTCACCTTCCTG	ref_2989_upstream	13	10	24	23	10	16	14	13	8	12
CTGGTATGGGTCCCCG	ref_2989_upstream	36	27	37	60	26	29	17	42	25	34
GATTCTACCACGACTT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTTCCTGTCGCTG	ref_2989_upstream	143	66	178	158	76	141	55	151	58	122
GGGTCTTTAGGAGGCC	ref_2989_upstream	340	147	403	375	124	340	160	318	166	309
TCGTCCCGTCTAACGT	ref_2989_upstream	29	22	43	36	23	23	14	18	20	13
GTCCACCGAGGGGATA	ref_2989_upstream	18	10	34	20	16	16	9	17	6	17
AAGCAAGCTTGCCAAA	ref_2989_upstream	38	17	61	36	22	40	10	33	21	34
GTTTGATCGACGCATC	ref_2989_upstream	110	47	105	91	59	102	46	77	53	100
ATCTTTTTATATATAT	ref_2989_upstream	47	15	59	51	15	50	17	23	18	35
GCTAAACATCTATACC	ref_2989_upstream	39	16	52	36	18	32	17	34	4	34
ATGGTAATGTCTATAT	ref_2989_upstream	40	19	42	37	17	42	18	37	27	45
ATTTCAAGATGTCCCC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGGAATTACGCCT	ref_2989_upstream	154	58	197	180	83	147	71	160	83	161
GTAGTCGTCGCATGGA	ref_2989_upstream	2	0	2	0	1	1	1	4	0	0
TCTCTGTCCTATTCGG	ref_2989_upstream	33	14	39	47	18	26	15	37	8	34
AAAGCAAGGTGCCTGA	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
AATTCGGTACCATAGC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GAACCCCGTCGCGGTC	ref_2989_upstream	12	5	11	9	11	6	6	15	14	9
CTTGGTGTAAATGCTC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CAAACTCTCAAGGGTA	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCGGGGTACATTTTAT	ref_2989_upstream	31	3	27	26	9	14	10	23	15	23
GTAAAGAAGCGAGCTT	ref_2989_upstream	191	105	260	228	84	203	100	204	94	189
TAGGGTTAGTTATTGA	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CACATAGCTATACACT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCCCACTCTAGAG	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
AGGTACTGCCTTCCCC	ref_2989_upstream	27	22	40	31	20	28	24	22	24	30
AATTCGCTTCCTGAAG	ref_2989_upstream	57	30	63	46	21	48	26	41	20	35
GTCCTCTCGAATGATT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GTACAATTACTGTTGG	ref_2989_upstream	97	46	121	85	49	100	37	94	45	99
ACCAACCTCATCCCCG	ref_2989_upstream	48	37	51	50	30	42	37	53	40	37
TTTGCTAGTCCTTGGC	ref_2989_upstream	90	42	111	66	44	73	45	81	49	74
TGCCCAAGTCTACGTT	ref_2989_upstream	18	10	21	17	9	12	17	17	8	21
GCGCACTCAGACTGCC	ref_2989_upstream	110	38	112	96	46	80	47	94	31	92
GGGTTACTTTCTTTTT	ref_2989_upstream	8	1	3	7	4	4	2	7	2	10
GCACTCACCATTCTGC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTCGATCAAGGAGCAT	ref_2989_upstream	16	3	15	7	8	8	4	17	7	10
GTCCCTAACGCCTTTT	ref_2989_upstream	55	22	64	56	23	51	15	47	13	47
TCTGCCTGGTTCGCTA	ref_2989_upstream	121	40	155	111	40	88	52	96	60	99
ACCGTCCCGGTTCTTT	ref_2989_upstream	97	35	107	88	44	75	58	95	63	71
TCGTCGCCTTGTCATC	ref_2989_upstream	99	51	137	102	57	104	48	70	42	89
CGAGGCCTAAAGATCC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
AATACGATATCTTGCC	ref_2989_upstream	29	11	47	40	17	22	12	43	15	36
GGTTCTACTTTAGCGT	ref_2989_upstream	18	9	31	22	10	23	6	20	17	21
ACACCATCAGCTATCA	ref_2989_upstream	0	0	1	0	0	0	0	0	0	0
ACACGATAGATGAGGA	ref_2989_upstream	84	34	114	105	28	82	30	101	36	91
ATAACAGGTTTTATGC	ref_2989_upstream	143	43	211	172	73	139	72	171	70	140
GCGCGGTCACCTATTG	ref_2989_upstream	159	86	185	168	69	137	76	147	67	139
TGAGGCCTGCCTGCTC	ref_2989_upstream	19	12	18	22	7	21	6	20	6	18
AACGCTATTCGTAGTA	ref_2989_upstream	123	55	158	147	64	114	56	131	54	101
GATTTATATAATTCAC	ref_2989_upstream	95	58	107	92	61	93	47	83	51	88
TTGTTAGTGCACGAAC	ref_2989_upstream	103	51	154	128	65	126	49	107	61	108
CCCTCCCTGGCATTCG	ref_2989_upstream	84	21	75	77	28	75	43	79	38	66
TAAGGACCGGGTCAAC	ref_2989_upstream	42	31	65	83	33	50	24	45	27	52
GCTTTACTTTACGTGT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCCCGACCGACCC	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTATGGTGCTAG	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTATAGTGCTAG	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTTTGATTAATT	ref_2989_upstream	80	20	66	55	24	48	28	55	38	62
TTCTGTTGAGTGGCAC	ref_2989_upstream	21	15	18	33	11	33	6	13	11	20
TCCGGCACGTTTTGGA	ref_2989_upstream	22	15	52	36	11	54	20	25	16	36
GGCTGTGACTTGGGAT	ref_2989_upstream	18	5	16	12	8	14	4	18	7	8
TGCACGCTGCCGCTCC	ref_2989_upstream	16	2	16	19	7	13	4	9	3	11
TCATCGAATTAGGTGT	ref_2989_upstream	50	28	54	48	27	42	28	42	24	56
GATATCTTGTATCGTT	ref_2989_upstream	85	38	91	89	32	72	19	81	23	72
TCATTGTTCTTGCTGC	ref_2989_upstream	52	19	58	48	23	52	21	50	33	41
TTTCCCAGCCTTTAAA	ref_2989_upstream	104	39	127	131	59	94	57	111	52	123
ACGTTTTGATTCGCCT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTCGGTCTATGG	ref_2989_upstream	518	214	645	568	262	451	231	487	204	461
TTCCTTTTTCCCTAAG	ref_2989_upstream	66	11	65	53	17	50	20	71	29	66
AGCTAGCCCATTACAA	ref_2989_upstream	103	45	105	86	43	89	61	74	51	85
CTCTTGTGTATAGATG	ref_2989_upstream	137	63	187	164	64	128	63	133	48	128
CTACTACCACACTCTA	ref_2989_upstream	42	16	44	48	25	33	32	38	25	31
AGGGGTCCTTAACGCA	ref_2989_upstream	91	37	111	84	23	87	28	92	37	85
ACAAGCATATTCTGTT	ref_2989_upstream	732	271	800	674	286	654	295	647	300	593
TGATCTGTTTCTTGTC	ref_2989_upstream	133	31	153	161	43	120	36	134	46	103
GGCCGAAATAACTACC	ref_2989_upstream	407	131	495	453	138	383	128	403	190	360
CAAACGCCGCTGCCTA	ref_2989_upstream	34	24	49	46	18	37	19	37	33	25
TAAAGGTACTGAACTT	ref_2989_upstream	189	111	278	273	81	215	90	210	93	191
GTACATTACTTCGCGG	ref_2989_upstream	75	31	62	57	33	72	29	52	35	56
ATTGTATATTTTACTT	ref_2989_upstream	392	137	463	413	144	363	133	360	121	325
GTTTTACCTGACCCCT	ref_2989_upstream	45	15	59	48	20	34	17	32	27	40
AGGGACACTTTCGTGC	ref_2989_upstream	26	14	25	25	11	30	15	28	19	22
TAGCACCCACCTCCTC	ref_2989_upstream	218	60	248	229	68	155	83	161	73	170
GTGATCGTTTTTGCTG	ref_2989_upstream	162	66	205	171	79	163	79	139	82	144
CTTGGTCGGTTAGGAA	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
AGGCACGGAGGCCCTG	ref_2989_upstream	264	98	341	313	99	262	127	238	119	246
CGGCGGCCGGAACGAT	ref_2989_upstream	21	26	27	24	15	29	33	34	19	27
ACGTCCCAGAGCCTCT	ref_2989_upstream	32	18	40	28	19	26	12	28	11	23
TTAGCGCATTGTACTA	ref_2989_upstream	271	133	285	233	107	238	133	235	100	197
TTGATTTTCTGAAACC	ref_2989_upstream	0	5	0	1	5	2	3	1	9	3
CTGTAAATGGAAACTG	ref_2989_upstream	49	28	55	51	25	46	27	61	26	56
TCGGGTCATTATTAAT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTCATTCGTGTTG	ref_2989_upstream	117	77	182	161	92	143	78	129	74	127
GGAAAAGTTCTTTTGG	ref_2989_upstream	58	16	51	60	19	54	17	38	31	31
ACCATCTTAAGCTCGA	ref_2989_upstream	67	26	87	96	31	81	32	55	27	66
CCAGTGCCCCTCACCG	ref_2989_upstream	20	137	35	31	161	19	128	18	121	19
TACTAGCTGTTCGATA	ref_2989_upstream	17	13	18	17	10	19	13	10	16	19
CCGTCCATCTTGTCGT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
TTATTGATTTCTGATC	ref_2989_upstream	73	13	93	83	31	71	26	85	32	44
GGGTCTACTTTAGCGT	ref_2989_upstream	89	23	126	75	36	80	37	80	27	74
GAAAAGTCCATGAGAG	ref_2989_upstream	8	4	15	10	1	7	9	11	7	6
TCGAGTCGGCATAAGC	ref_2989_upstream	104	25	116	92	39	79	26	57	31	65
GTGTTCTTCGGCTTCT	ref_2989_upstream	34	15	56	34	12	36	15	29	11	40
TTCGTTCGTTTCTCGC	ref_2989_upstream	47	9	49	53	12	41	12	46	14	35
GCGTCGTGTAAGACAC	ref_2989_upstream	17	4	13	14	5	14	11	14	4	11
AGCCTTGTGTAAAGCC	ref_2989_upstream	507	215	650	555	255	465	237	487	279	473
CTTTTTAACATAACGT	ref_2989_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTTCTGAGTCACC	ref_2989_upstream	31	5	23	32	11	33	16	31	11	30
TCCTGGGAATACCCAT	ref_2989_upstream	35	35	33	33	32	26	33	22	32	18
GTATGATTAGTAGTCG	ref_2989_upstream	26	7	35	22	11	28	14	31	17	24
GTGGTTATACAGCGTG	ref_2989_upstream	10	9	11	16	7	11	7	14	4	8
CAGTCAGTGGCCTAAC	alt_3781_fdr	3	4	9	4	6	2	0	5	6	4
TAGGTGTGCGTGTAAT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTGTCAAGTTTCC	alt_3781_fdr	64	55	96	66	62	51	48	52	45	53
CTACAAGTAGAGAACT	alt_3781_fdr	43	15	31	30	22	30	17	23	27	27
TCCTCGGGGATGTTAA	alt_3781_fdr	276	169	343	271	205	267	208	249	201	247
AGGCCTTAAGAATACG	alt_3781_fdr	313	260	372	325	247	326	249	353	272	283
TGTCCATCGTGATATA	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CTATGCCCCGTCTGAG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCTGCATACCGCG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGGGGAACACACT	alt_3781_fdr	119	52	125	111	68	102	59	97	80	90
GCGTATCATTTCTGCT	alt_3781_fdr	0	0	0	0	1	1	0	0	0	0
CTACCGAGACTATGGT	alt_3781_fdr	7	6	6	9	2	6	2	5	2	7
AGGAGTGTGGTGGTTC	alt_3781_fdr	54	33	74	66	40	50	31	57	45	52
TGTCCTTGCTTCTTAC	alt_3781_fdr	23	15	28	28	11	11	18	11	15	23
CGTCATTACACGGCTC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGTCGGATCGAAC	alt_3781_fdr	3	18	4	8	6	7	12	5	14	8
AATCTCAGCGCTTTTC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TACTGCAAATCGTTCT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTTGCAGAGCGTT	alt_3781_fdr	21	10	26	21	13	31	14	26	15	12
TCTAGCTATTCTGTTT	alt_3781_fdr	41	30	41	55	23	41	29	39	36	26
GCGGTATGGTTGTATC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
ACCAACTAAAGGAAGA	alt_3781_fdr	4	1	3	3	2	5	3	3	2	9
TGGCGGGATTGCGGTT	alt_3781_fdr	37	26	45	33	14	27	33	34	21	36
CGGAATTGTCTTTATA	alt_3781_fdr	37	28	40	28	23	18	26	27	21	22
CAGGATTGGGCCAGCT	alt_3781_fdr	37	21	51	49	19	38	23	43	20	26
CCTCTCGGTACGACCG	alt_3781_fdr	17	15	20	26	35	14	18	15	32	25
GGTTCCTTCCACAGGT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTAGTGCTTTGGATCA	alt_3781_fdr	10	3	10	10	10	14	8	10	10	8
CGTCAGATCCGAGAGT	alt_3781_fdr	7	8	8	6	7	8	8	6	8	2
ACGTCGCAACCCATAT	alt_3781_fdr	38	38	53	45	64	42	34	53	51	37
CTCTCAGAGCGGCTAC	alt_3781_fdr	48	25	65	47	41	49	44	51	42	37
TATCGTCCAATTCCGG	alt_3781_fdr	51	25	49	53	32	27	24	38	26	40
TTGGTTCTCACTTGTG	alt_3781_fdr	79	63	79	68	44	46	50	48	53	50
ACCGATCGGTATTATC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTTCAAAGAATTCTCC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
ATGACCGCACGTAGCT	alt_3781_fdr	46	20	40	25	14	32	32	30	22	34
AATTGCCGTCTACAAT	alt_3781_fdr	12	11	22	10	10	10	10	11	7	13
GTAGGCGATCATTGGA	alt_3781_fdr	7	3	9	9	7	5	4	6	7	12
ACCCATGAACGTATTA	alt_3781_fdr	19	24	24	22	21	24	15	28	15	20
GAAAGCTTCTGATGGC	alt_3781_fdr	74	59	92	80	37	55	59	76	49	80
TTCTCGTATATGAATC	alt_3781_fdr	23	17	29	25	16	19	12	26	22	24
GTTTTATGGAAACGAG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGGCTTTCTTTAC	alt_3781_fdr	80	52	94	88	57	65	50	72	57	74
TCGCTTTGAAGAGAAG	alt_3781_fdr	45	18	50	27	21	31	25	49	36	29
TTCTATTACGATTAAC	alt_3781_fdr	38	4	29	23	21	22	15	32	26	28
TGTAGGACTATGGTGA	alt_3781_fdr	8	5	12	14	5	9	3	10	4	4
CTGGGAATTTTGTGGC	alt_3781_fdr	28	24	19	30	15	20	15	23	24	38
TGACTGAGCCCCGGTT	alt_3781_fdr	46	46	69	67	29	44	38	83	42	66
GTTTACTCGTGGCCTA	alt_3781_fdr	11	11	19	9	7	19	8	9	10	2
TGAGGTAACCATCTAT	alt_3781_fdr	127	82	137	135	96	96	87	118	91	116
CATTATTGGTCATACG	alt_3781_fdr	17	12	25	16	18	22	11	17	12	19
TAAGCGGGCCAGTTTT	alt_3781_fdr	62	51	89	63	54	63	63	68	42	61
TCATGCAACGAATTAA	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGACTTCTTAAGC	alt_3781_fdr	149	111	170	164	123	143	124	146	127	114
CTCTAGATGGTATAAC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
AATATACGATGTTTAC	alt_3781_fdr	17	11	36	19	13	11	15	18	9	18
TTGCTCTACAAGGCCT	alt_3781_fdr	153	105	185	166	90	151	110	168	128	164
ATCTTTATGGAAATGT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GAACTTCCTCCAGGCT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCTGTTCCCATTT	alt_3781_fdr	11	14	7	11	7	8	8	9	12	6
GTGCCGATTTAAGTCA	alt_3781_fdr	44	46	46	60	28	26	23	31	42	42
GGGGTTGTGAACTTCG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGGTCATAACATT	alt_3781_fdr	135	64	174	128	79	128	72	112	59	116
TTTATGACAGATTTCG	alt_3781_fdr	103	70	131	115	72	105	90	115	81	131
GCTAGATAGTGCGTAC	alt_3781_fdr	30	31	28	24	36	35	32	23	40	15
TCTCCTCTCTCGATAA	alt_3781_fdr	2	0	2	2	1	1	5	1	2	1
AGGTCACCCGCTCACG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GCACATAGGTATATGG	alt_3781_fdr	8	5	9	12	4	6	6	4	6	2
TCGCGGTGGAATGTCA	alt_3781_fdr	135	70	137	132	77	109	77	102	84	98
TAACTATGGGTAAACG	alt_3781_fdr	99	55	91	84	72	71	47	84	62	73
TACGACACGCAGGTTT	alt_3781_fdr	91	50	123	103	50	83	67	62	63	72
GTCGGGCTAAAACCGT	alt_3781_fdr	62	42	85	75	51	61	47	56	51	68
CCGGGTGGTGAAATCG	alt_3781_fdr	45	43	61	45	28	53	29	51	32	38
CTTTGAAGGCAAGGAT	alt_3781_fdr	165	103	210	170	109	147	127	173	142	114
AGTGGCATTTTTTGTG	alt_3781_fdr	74	62	89	75	69	68	60	79	50	62
TCCTCCGCTGTGATGT	alt_3781_fdr	145	112	138	123	102	107	96	142	114	94
CAGCCGAGCTCAGTGA	alt_3781_fdr	34	65	66	56	38	52	49	59	30	55
CGGACGGTGTATTCTA	alt_3781_fdr	22	9	27	12	12	25	14	23	9	20
CCTCTCTAATCCTATG	alt_3781_fdr	289	139	299	276	178	246	152	247	169	243
AACGTATTTGAGCTGT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CAACGACATTGTTTTT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CAGCGAGTAGGGTTAT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
ATACATTGTCATCACC	alt_3781_fdr	145	108	117	139	111	88	122	122	116	113
ATTTTTCATTTTTACC	alt_3781_fdr	384	181	500	424	201	381	185	340	187	365
TTGGGCTGCCTCAGAC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGTACCAAACTGG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTGTTAAATCCGC	alt_3781_fdr	34	34	61	38	35	48	38	48	39	51
CTGCCATTTTAGGATT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CTTATGGTCCATCTGG	alt_3781_fdr	57	50	61	62	45	72	44	58	31	60
ACCCGTGCCCGCTCGT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TGGCTATACCCAGTTT	alt_3781_fdr	289	174	394	381	191	306	217	273	224	274
TGATTAGGTCAAGCGG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GGTGAAAGTGTTCTTA	alt_3781_fdr	85	54	103	96	52	82	42	91	45	78
CTTTGTTAATAATCGC	alt_3781_fdr	169	115	170	149	113	156	113	154	115	149
ACTACATGGCAAGCGT	alt_3781_fdr	13	6	21	14	11	16	9	19	15	12
GACGGGCTTGCTGGCT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGCCGTAGTTAGT	alt_3781_fdr	132	79	155	126	92	134	88	122	93	109
CTTTGGCGCCGTTGTT	alt_3781_fdr	111	87	146	117	67	109	84	107	84	96
TCGCGTAATTGGGAAA	alt_3781_fdr	36	27	46	38	30	33	20	40	25	44
TTTCTTAATTGGCTGT	alt_3781_fdr	574	289	615	562	299	576	351	488	276	437
GCCTCTGAGCGAGAAC	alt_3781_fdr	23	17	29	30	15	19	16	17	16	24
ACACCCTAGTTATGTT	alt_3781_fdr	51	34	66	68	33	56	35	54	32	53
TCCTAAGCTTTCGCTT	alt_3781_fdr	4	13	12	4	5	1	1	4	10	5
AATGTGAGGCAATGAA	alt_3781_fdr	64	44	77	69	41	64	45	53	45	39
ATAAGTTAGCCAAGAT	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTCCTCTTCAAAG	alt_3781_fdr	26	16	31	36	14	26	16	28	14	35
CGAGGTGGCCTACGTC	alt_3781_fdr	20	12	26	24	9	29	9	29	17	14
AAAGTCCGCTTACAAG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGAACACCAAACT	alt_3781_fdr	28	23	27	29	12	20	18	23	27	24
CTGGTAGTGCATGCTA	alt_3781_fdr	59	43	63	46	39	43	30	48	44	55
TCACTACCTTTCCTGG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TTAGACGCAACTCTTT	alt_3781_fdr	50	30	74	75	39	53	51	60	44	63
TAATCTCATCGAGCCA	alt_3781_fdr	39	12	48	9	30	25	20	45	18	28
TCCGGTTTTCCACAAG	alt_3781_fdr	86	52	77	57	52	72	41	49	61	57
GATGGCCTGGGTCCCG	alt_3781_fdr	56	47	86	61	54	83	60	59	51	50
TGTCTCGATAGTGTCT	alt_3781_fdr	231	189	309	294	172	243	194	253	185	224
GAAGTCGCATATCTCT	alt_3781_fdr	10	7	26	19	15	28	11	19	12	14
TTTTGAGGTCCATTTG	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
GTATATGGTTTAGGTC	alt_3781_fdr	48	25	50	46	28	41	39	48	23	34
CATCGATGAACCCTAA	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
CCATACTACAGGTCCC	alt_3781_fdr	67	68	90	72	45	73	55	68	46	76
TAAGTGGTCCCTAGTC	alt_3781_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCCTGCGAGTTTG	ref_5745_new	52	24	85	54	30	41	25	58	27	36
GACTGATCCCTATAAA	ref_5745_new	44	21	49	32	9	36	28	38	16	36
TCTACTTCGGTTCATT	ref_5745_new	5	3	15	5	2	4	3	10	7	4
GATGTCCCGGGTAACT	ref_5745_new	33	12	49	34	19	29	15	30	13	26
GATGTGCTAGACAAGC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GCGTGTTGGGAATCTA	ref_5745_new	6	5	11	6	5	8	7	8	10	9
GATGAGGTGTTTGTAC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TCCTCAGTTCGAGCAT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CAGTGTAATGTGGTAC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CGAAAATGTCTGCTTA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TACGACTAATTGAACC	ref_5745_new	48	19	60	46	27	43	16	47	17	57
CATTTGTACACTCAAG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CAATGGGCACCCTTGT	ref_5745_new	207	71	297	239	93	194	89	244	84	219
TTTGGAGAGTGAACAT	ref_5745_new	14	2	29	11	9	18	10	19	7	20
GCTTATTTCGAGGATG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TTATTAAGGCGCTTAC	ref_5745_new	11	5	17	25	8	8	4	8	4	17
TAAACATCTTACACTT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TCAAGGATTTCCTAAT	ref_5745_new	18	8	18	18	7	9	2	12	7	10
ACTATATCTCACCCGT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GGCACCAATTGCTATA	ref_5745_new	153	64	156	158	37	108	58	119	56	119
TAATTGCTCGATGTAA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GCCCCTTATCGATATA	ref_5745_new	7	2	6	12	4	9	4	12	7	6
CCTTGCCATGCAGAAG	ref_5745_new	14	6	22	11	5	18	10	22	12	7
CATTCATCATGTTGTA	ref_5745_new	156	50	170	180	60	143	76	178	55	150
CATCTGTGTTCCACAA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TTCTCGGACGCTTCTA	ref_5745_new	15	6	22	18	11	15	2	16	9	14
TGTATGGTGTTGCGTG	ref_5745_new	50	27	46	54	21	47	17	48	20	32
TGATGTTTTTATATCT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CATGTTATTCCACGGT	ref_5745_new	63	14	71	63	23	56	28	61	30	51
GCTATGGTGCAGCGAC	ref_5745_new	56	33	78	55	25	55	29	59	30	67
TCTGGTCTACCTGTCA	ref_5745_new	41	22	59	49	38	39	20	36	34	37
CACCGGTCAAACAGTG	ref_5745_new	9	8	13	13	13	7	14	15	12	13
TGCGCACTGTGTAGCC	ref_5745_new	83	44	106	108	60	94	45	83	55	101
CCAAATCCTTCCCATT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GGGGACCAAGTGCTGA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TACGGCAATGTCTTGT	ref_5745_new	50	19	55	52	20	54	17	53	20	56
GCACACGTCACGATGT	ref_5745_new	50	27	66	55	26	50	24	54	14	45
GCCCCACTTCAAGCGA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TGTCTCCGTACCGATA	ref_5745_new	214	96	249	199	98	160	96	176	110	176
TGTCGTGGCCCATCCC	ref_5745_new	6	6	22	11	3	13	2	5	5	8
CTTATCGGGATTCTAG	ref_5745_new	185	79	279	227	92	214	86	221	120	189
CCAGACCATCTAGTGG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GTGGATGACGACACTT	ref_5745_new	3	0	3	1	0	4	0	0	0	1
CTGTTCCTCGGGTCGT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
ATCAATATCAATTGCA	ref_5745_new	32	15	38	35	15	32	20	23	13	30
TTAAGCGGTTTAACAG	ref_5745_new	15	9	18	32	5	14	12	13	6	30
TTTCATAGTAGCATGG	ref_5745_new	233	129	330	260	103	257	150	202	120	212
GTCAGCCACCCTAGTC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
AATTACTCTCACCAAG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
AAGCGCCAGCTCATTG	ref_5745_new	40	11	25	30	20	29	6	28	10	25
GGATCTTCTGTCGAGG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
AGTCTATTTAATCGTT	ref_5745_new	20	13	26	24	9	17	12	22	13	25
GGACACGTAGGTTACG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GTATAATATTCATGAA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
AGGGATTGGTCGATCC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CTATGCTGCGGAGTAT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
ATTTTCTAGCATTTCT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TTCGGCTTGCGCATGA	ref_5745_new	21	15	26	23	9	21	10	31	13	30
CTCTCTTTAATGCGGT	ref_5745_new	23	14	30	23	13	25	7	20	6	9
CATTCTAACGGGTAAA	ref_5745_new	66	19	68	52	23	42	33	62	35	47
TTAGCATTAGGACTCT	ref_5745_new	35	12	41	33	19	33	16	29	15	29
TCTCATGGGGCGACAA	ref_5745_new	73	28	101	71	21	68	31	50	25	62
TGGGGTAAGTCCACGG	ref_5745_new	130	53	159	135	55	127	61	118	84	119
GGGTGCTTTGTTGCAT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TCGAAATGCGAATCTA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TACTTCAACTATTCGC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GATGCTTACTAGCACC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CGATTCAATGTCACTT	ref_5745_new	30	20	40	36	14	39	11	39	20	35
TCACCTAATCGTATGC	ref_5745_new	71	31	49	49	31	39	23	73	32	35
GGATTCCATAGCAAAC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CAGTTAGGAGCATTGG	ref_5745_new	70	33	68	56	23	53	26	62	28	52
CTGATACATACGCGCG	ref_5745_new	149	64	231	156	72	130	77	161	85	121
AACACATGTCTTAAGC	ref_5745_new	58	28	59	75	26	55	31	68	29	51
TAGGGGGGATCTGAGC	ref_5745_new	147	74	180	157	54	125	63	141	62	127
TTACTAATAAATCCTT	ref_5745_new	57	13	46	40	16	31	8	48	17	48
GCGTGTCTTAGATTGC	ref_5745_new	10	10	25	21	8	18	11	19	9	25
CCGCATGGCGCCTCCC	ref_5745_new	14	22	20	11	14	17	20	15	25	11
GTACAGTGTTAGCATG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TCGACCGTACACCCTA	ref_5745_new	9	15	24	18	11	4	5	16	14	12
GCGGAGCCCGTCTCGT	ref_5745_new	13	6	14	7	10	5	8	12	6	7
CATTCGTCAGACACAC	ref_5745_new	14	6	25	20	3	21	14	24	8	20
CAAGGGATCAAATAGT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TCAGACATCTCCGCGT	ref_5745_new	18	12	25	30	20	26	16	13	21	16
AGCCCTGATAATAGCC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CTGCATGTCCATCAAG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CTATCGTCATTAGCGT	ref_5745_new	63	46	98	72	36	68	34	74	49	61
CTCGCTCATAAGCACC	ref_5745_new	42	25	45	37	21	46	23	36	23	26
TGTGTTATCTTTGTAT	ref_5745_new	8	2	8	7	3	8	0	5	4	6
TCTTTGGTTCTGAAAC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GGGCTTTTCTAGAACA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GGGAACTTTGTAAAAT	ref_5745_new	39	15	66	60	18	39	19	40	28	42
CGAAGTGGCGACATGT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
AATACCTGTCCCACGG	ref_5745_new	78	45	108	96	39	69	37	89	53	64
ATGTTCTCGATAATAG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TTATAGCACGGTGTAC	ref_5745_new	75	47	125	97	47	109	48	80	46	88
GATGCGAACCACTATA	ref_5745_new	59	24	65	53	19	62	25	50	22	56
GAACGTTCGGAGCTTT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GGCATCCGTGCACCCG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CTTACGTAACCCACCA	ref_5745_new	24	14	22	22	12	23	4	22	12	15
TTCTTTTCATCGTCGG	ref_5745_new	4	0	10	5	0	3	0	4	2	6
TGTCAACTTCTGTTCG	ref_5745_new	5	8	6	3	17	4	11	7	9	5
CCCAAACTTACGTTGG	ref_5745_new	85	28	117	89	29	57	42	61	46	68
AACGACTTCCGTTGTT	ref_5745_new	30	5	29	18	8	16	10	18	10	19
TTCGAGCTTTTATTGC	ref_5745_new	30	20	37	34	18	39	11	27	23	36
AAATTGGTATGGTCTG	ref_5745_new	57	25	73	73	19	39	30	49	32	51
AGTTAAGAGGAGTGAT	ref_5745_new	38	13	41	27	14	44	21	36	9	17
CGTTCTTTTTGCTGTT	ref_5745_new	321	165	366	294	148	274	133	301	129	265
CTCCTCATCTTTTCGC	ref_5745_new	0	0	0	0	0	0	0	0	0	0
ATGCGGAATATCGGTA	ref_5745_new	41	35	79	64	27	54	34	61	33	54
TGTTACTTGCATATGA	ref_5745_new	449	194	589	512	182	484	214	414	230	400
GCTCGCCCGCTACCCT	ref_5745_new	2	2	4	5	1	1	1	2	0	4
ACAGACTAATATGGAC	ref_5745_new	17	4	15	13	7	10	10	10	1	13
CTCGCTTACACATTTT	ref_5745_new	13	3	11	6	4	10	10	15	2	11
AGGTCCATCGCACTCC	ref_5745_new	22	10	32	25	10	25	5	27	15	21
CTCTCTTCGAGTATGG	ref_5745_new	56	24	71	80	35	59	18	60	24	55
ACTGTGACGGGTACTT	ref_5745_new	54	20	77	63	27	54	24	61	38	59
TAATGCAGCTGACTCT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TCGTGCGGTATGCGAT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
ACTTTTCAACCATACG	ref_5745_new	32	18	47	28	20	33	12	22	19	25
GTTTGTGCAGTTCACG	ref_5745_new	168	70	233	194	80	178	91	160	80	139
CCGGCCTCTGTTAGGG	ref_5745_new	3	10	8	5	7	5	6	4	11	4
TTGGGCTCATTTAAGC	ref_5745_new	44	23	52	51	20	45	25	48	28	49
TCATGGAGATGGTTCA	ref_5745_new	78	23	98	73	33	95	40	85	43	71
TGTGTTTTTGCCATTT	ref_5745_new	59	23	81	45	24	58	22	60	23	53
CGGGGTTGAATTGTCG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
CGGGATTAAGCGTAAG	ref_5745_new	13	6	17	16	3	11	4	8	4	11
ACTTATCTTCATCAAA	ref_5745_new	0	0	0	0	0	0	0	0	0	0
AAACTAATGGGCTCTG	ref_5745_new	8	4	13	6	2	10	2	8	2	4
CTAGTTATGCGTAAGG	ref_5745_new	48	20	40	40	29	38	23	36	33	41
CATGTTGTGTCAGAGG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
AAACGTTATGCGCCCG	ref_5745_new	35	17	38	39	16	32	14	42	22	44
GTATGGTTGCATCTCT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
TATGCCTAATAGTATT	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GACGTCCGTATTTCGG	ref_5745_new	45	16	49	43	24	36	26	36	22	50
CCCAGGGATGAGAGCT	ref_5745_new	13	4	25	13	6	8	4	9	9	11
GCTCGGTAGCCATCTT	ref_5745_new	46	18	69	44	18	38	21	42	25	30
TACGACCCATCTTCCG	ref_5745_new	0	0	0	0	0	0	0	0	0	0
GGTATCATCCGTGTTG	ref_5745_new	40	27	64	44	18	37	24	45	16	41
ATGTTCTTCCCTAAGT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CATTTTTTTATCGCAG	alt_1116_fdr	35	43	70	53	55	43	35	57	43	34
TAAACTTGAGATGGAC	alt_1116_fdr	48	42	66	60	38	37	37	45	38	40
TACCATTGGAGCGATG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGACTTCAAAGCA	alt_1116_fdr	2	3	0	2	0	1	0	2	0	1
GTCAACAGTTTCTGGC	alt_1116_fdr	43	21	44	22	23	26	39	24	39	21
CCGCAGGAGTAATCGC	alt_1116_fdr	20	13	25	19	16	14	22	14	25	16
GGGTTCTATGGGATTC	alt_1116_fdr	11	7	19	19	18	29	20	19	20	15
AGTTTTCAGCTTAGTC	alt_1116_fdr	75	92	106	100	65	92	73	67	94	83
GCGAGACTAGGTAACA	alt_1116_fdr	22	6	20	15	9	8	9	13	13	14
GAAATAGCACCATTTC	alt_1116_fdr	19	9	30	32	17	27	27	22	31	16
TCCATATGAAACGTAC	alt_1116_fdr	58	43	84	63	48	61	62	64	62	64
ATTGTGATGACATGCA	alt_1116_fdr	6	4	21	14	9	9	11	12	7	6
ACACCAATTCATGGAT	alt_1116_fdr	41	34	42	38	40	41	35	28	33	25
CACACCCGTGGCATAG	alt_1116_fdr	1	4	1	5	3	1	4	2	1	0
TTAGATATCTTCCACA	alt_1116_fdr	74	79	113	94	49	95	65	73	98	71
GCAGACATTGTTAACG	alt_1116_fdr	79	76	93	102	69	75	56	64	83	64
AGGGGAGTTTGGTTGT	alt_1116_fdr	3	6	8	3	1	4	7	8	9	9
TTCGAATGTCTTCAGT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGACTGCTTACGC	alt_1116_fdr	70	73	86	71	68	67	59	61	64	51
GGGACCTGATACCATA	alt_1116_fdr	102	98	137	142	106	114	102	107	93	115
GTCACACGGACACGGT	alt_1116_fdr	8	8	12	12	10	15	15	10	10	7
TTAGTCTATTGTTCGG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CACTGCAACGGAGCTT	alt_1116_fdr	13	23	13	21	10	13	22	15	15	17
AACCCACCCTTTAGGC	alt_1116_fdr	5	1	8	3	5	0	4	2	4	5
TAGCGTTACCCGCTGA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGCCAAATCTCTA	alt_1116_fdr	14	10	15	18	13	11	14	14	15	11
GAGAACTTATCGGGCC	alt_1116_fdr	9	5	4	11	1	1	3	6	3	2
ACCATCAATTCAGCGC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GGATCTGTGAAGACGA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATTCATACAAGCTATG	alt_1116_fdr	23	19	29	24	34	22	14	17	24	23
GAACTACCTCCCTAGT	alt_1116_fdr	6	6	4	4	11	9	7	14	5	7
TGTCGATGGTTTTTTC	alt_1116_fdr	77	52	93	69	65	53	55	51	49	58
TCTTTGTCGGATCCTC	alt_1116_fdr	16	6	10	9	6	13	13	18	7	12
GAACATCGGCAGCTAC	alt_1116_fdr	20	11	20	20	13	18	26	23	10	20
CAGCTGACAATCAGGT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTCGCATATTTGT	alt_1116_fdr	8	1	3	3	2	2	2	2	0	2
GTGGTAGTTTACATAT	alt_1116_fdr	7	5	7	6	3	8	3	3	5	5
CAATGACGTCTTGCGT	alt_1116_fdr	25	14	16	21	17	14	24	24	14	15
GGAACTTTGCTGGCTT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CAGGCTCTACTGTGAG	alt_1116_fdr	21	24	26	19	20	13	21	12	25	18
GGGCGCAGTTTTCAGT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGAATTGCCTATT	alt_1116_fdr	11	4	13	10	15	17	11	13	14	19
TGCCGTCCGCTACTGC	alt_1116_fdr	17	16	9	11	12	16	25	7	14	7
TTAGCAGCGCGGATAT	alt_1116_fdr	223	233	332	295	237	282	239	230	242	246
ACGTCTGTTTATCATC	alt_1116_fdr	104	84	137	147	84	92	100	97	101	96
CAGCGCGTTACCTCTC	alt_1116_fdr	14	15	19	15	11	6	17	18	17	15
TGGACTGGTTTTTAGC	alt_1116_fdr	42	48	71	67	45	52	39	67	39	43
AACCTGTTCGCAATCC	alt_1116_fdr	26	35	57	42	40	33	26	30	23	30
GATAAGGGGTGGAGCA	alt_1116_fdr	16	24	18	28	5	21	14	21	16	20
ACATATGTCCTTCCGA	alt_1116_fdr	116	89	138	120	73	76	91	106	112	99
TTCTAATCGATCCCTA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCATCGTTTCAGC	alt_1116_fdr	101	88	118	101	98	102	74	114	85	104
GTATTCTGGGGTAGGT	alt_1116_fdr	15	13	12	22	9	12	2	15	8	16
GAGCGGTTGGCTAGTC	alt_1116_fdr	59	87	95	71	68	74	64	57	64	79
GGAGTTAATTCTAGAA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GCCAAAAAATTCAGTC	alt_1116_fdr	15	34	18	17	33	16	26	18	28	22
CGACGTCGTCTAGTGC	alt_1116_fdr	33	71	40	35	87	28	87	21	98	18
CCTCATGTCAGTCTGG	alt_1116_fdr	69	47	62	74	49	74	50	57	53	65
CGTGTCCCAGTACAGA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TAAGAGGGTACGTGTG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGTGCGATGTTTG	alt_1116_fdr	37	18	27	24	23	18	16	18	29	20
CGTCAGAACAATGGGC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTCCAAACAGTGT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCACTTTTGTCAAAGA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GATGCTGTTCTCGTTA	alt_1116_fdr	85	44	117	90	73	62	51	68	66	68
ACCGCATCCTCACCCT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTGTTGGCAACTA	alt_1116_fdr	88	64	128	93	88	87	72	88	81	76
CGATGAGTCGCCGAGT	alt_1116_fdr	39	35	57	38	46	22	31	38	34	18
ATCTGCGTACGCGCAT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGGTTTGTATTCA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCATGCGAAGAGC	alt_1116_fdr	56	42	67	65	54	47	42	47	59	43
TTGAGTTGTGGAAACG	alt_1116_fdr	38	31	39	36	23	38	32	34	19	25
TTTTACATTTGGGGGT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGTATTTCAAGAA	alt_1116_fdr	55	34	71	37	57	59	60	44	36	45
GTTCTTCGCTTGCCCG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CGCCAGATACAATTGG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCGCAGTACGCAT	alt_1116_fdr	36	30	42	50	34	47	43	42	31	42
AGCACTAGTTGCTCGG	alt_1116_fdr	3	9	11	0	5	5	13	7	6	0
CTCCTATAAAGTGGTG	alt_1116_fdr	9	12	11	6	8	9	7	5	7	8
CGGTGGATCTAAGATG	alt_1116_fdr	25	20	40	23	20	21	12	26	17	17
TCAGCGGCCCATATCG	alt_1116_fdr	3	3	6	2	2	3	9	4	5	2
ATCTGTCCGGCAATCT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GAAAAAAATCGGACTA	alt_1116_fdr	4	0	5	4	1	2	4	3	4	2
GCCAATTATTCTCAGT	alt_1116_fdr	12	14	10	19	17	16	22	17	22	19
TCTAGAGGTTCTGGCC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTAGGGCATCGCT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCGTACTTGAATCTTT	alt_1116_fdr	17	16	12	21	21	18	14	12	18	9
GCACAATTTCATTGCA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCATTCAGCCTCCCTC	alt_1116_fdr	42	55	51	52	70	44	68	50	59	43
CGCGCTGTTGGGTCAC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
AATCTGCATTTAGTTG	alt_1116_fdr	7	4	18	11	4	13	7	8	3	5
GAATTTCTTTCGTATT	alt_1116_fdr	13	12	42	38	13	22	19	21	16	23
CGAGAATTATTCACCG	alt_1116_fdr	15	12	18	23	17	13	21	13	20	16
GGTTATTGCGGCTTAT	alt_1116_fdr	63	47	87	67	51	56	41	53	43	45
CTGATGCATGCCGGAG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TACTAATCGCCAGTAG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTTTGAACTCTGA	alt_1116_fdr	17	14	19	22	19	15	31	13	22	11
TCGTCTCGGGCGCCTG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTTATCTGGGTGCCCA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGCATTTGTGATGCAA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTCCAAGCGCTTA	alt_1116_fdr	37	28	53	50	32	39	34	33	26	32
GTTGTAGGGGATCGCT	alt_1116_fdr	24	15	12	16	6	15	9	13	7	9
ACAATGTAGACGATTT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGAGCTTTTTCGT	alt_1116_fdr	39	31	52	47	38	44	30	30	40	37
CTACAATAGGGTCTCG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TAATCCCGGTCTGAGG	alt_1116_fdr	59	72	86	73	52	56	68	73	68	47
GACAACGGGGTGTAAT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGCAATTGTTCATCCT	alt_1116_fdr	24	28	43	40	23	28	30	33	21	28
TCTTGTGTCGGGAGTC	alt_1116_fdr	24	29	27	27	30	38	22	35	32	23
ACGGTCTTGCGATATC	alt_1116_fdr	27	21	16	18	32	12	22	9	37	16
TTGTAAGTGCTAACAT	alt_1116_fdr	14	36	34	30	20	20	24	15	30	25
TGAACTTCACTCTGAA	alt_1116_fdr	27	33	48	28	26	25	21	39	17	25
ACTGGGGAATTGATTA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CCCACGTAACTCAACT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CTTCATGTAGCTGAAG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTCCTAGTACCCC	alt_1116_fdr	21	18	20	19	24	15	17	23	10	24
ATTCCCGTTCGATTGT	alt_1116_fdr	1	1	0	2	2	0	3	4	4	1
CCCACACTTTCCCTTT	alt_1116_fdr	2	13	10	7	11	3	14	9	12	7
GACGTACTACACTAAT	alt_1116_fdr	17	19	29	22	15	20	25	32	28	21
GGTGGCCAACACTGGC	alt_1116_fdr	7	6	1	1	4	3	0	1	7	2
CTTGCCGCATCAGTTT	alt_1116_fdr	4	4	7	9	7	10	8	1	7	4
CGTCATCTATTGTCTG	alt_1116_fdr	39	24	32	49	20	30	26	35	34	24
AACCATAGGGGTAGAT	alt_1116_fdr	9	14	12	9	13	14	10	22	9	9
ACAACTTCGCCCCCCG	alt_1116_fdr	5	3	9	7	6	4	4	9	6	3
GGTGAGTGCATCTTAG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCCACTTTTCCAC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
AACTTCATTCCACATC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGCCGTCATTCTT	alt_1116_fdr	39	33	66	48	40	54	40	60	51	55
TGCTTGTGTCCGCGCT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
AGAGTTGCGCTCCAAC	alt_1116_fdr	9	9	13	3	9	11	1	8	11	9
TAGTTCCAAATATATA	alt_1116_fdr	9	4	19	8	8	7	11	7	7	5
CCCCCGCCCTAGGCAC	alt_1116_fdr	8	3	3	2	8	8	5	10	13	6
ACGTCTTGATGCTAGG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CTTATGATTTATATAA	alt_1116_fdr	71	63	72	78	45	53	67	74	42	45
GTGCTCGTATATATAG	alt_1116_fdr	36	25	42	24	29	26	34	35	26	31
GTCACCGCCACCACAA	alt_1116_fdr	53	109	37	24	126	31	106	30	137	34
TTTTTAAGGTTGCATT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGTGACTATCCAG	alt_1116_fdr	124	97	133	106	95	120	113	131	98	96
ATGCTCGGACTAGGGA	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCACGAGCTGCGCGCT	alt_1116_fdr	110	72	147	123	92	86	88	89	82	87
TATACAATTTTGCGTT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTATCGATCACCTGTG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGCGGCGTCTCAC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTTTAATTGCCCA	alt_1116_fdr	221	188	284	237	235	216	192	221	215	221
ACTGTGATTACTAGAG	alt_1116_fdr	26	8	37	14	21	28	18	21	17	21
CTTTCTCTTCTCGCCA	alt_1116_fdr	11	3	1	12	7	5	5	7	4	3
GTTCCGAGTCGAGCAC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
AAATGCTATGTGGCCT	alt_1116_fdr	19	16	25	22	15	22	8	16	18	21
CGGTTGTCGTGTATTC	alt_1116_fdr	2	0	2	0	4	2	3	1	4	3
TATGCCGCCACTTTTT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTGGATGAGCTAT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTCAACCTATGCGAGG	alt_1116_fdr	9	19	12	13	18	12	26	13	27	3
CTAGCCTCGGGCAAAT	alt_1116_fdr	20	24	34	38	19	23	35	27	20	17
TGTTAATCTTCCACAT	alt_1116_fdr	23	15	26	23	5	24	10	19	16	18
TTGTACTTATCGCAGT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
AATCTCGATCCAGCCG	alt_1116_fdr	3	8	7	8	5	1	6	4	3	2
GATTCATCAACCTGGG	alt_1116_fdr	87	80	122	96	71	91	94	119	72	75
CTAAAATCCAACCGGT	alt_1116_fdr	115	94	170	142	90	139	111	112	126	135
ATACTCTGGATAGAGG	alt_1116_fdr	2	4	1	2	1	5	1	3	1	2
TATAATGGGTATTTGG	alt_1116_fdr	64	40	78	40	38	44	43	47	39	52
TAGGCGAACAGCGCGT	alt_1116_fdr	19	22	30	26	18	24	20	19	17	17
TTTGTTGGGGAAGTCT	alt_1116_fdr	30	32	37	36	18	22	31	27	18	26
TATCCAATTGGCGAGT	alt_1116_fdr	41	27	58	32	29	46	33	40	24	25
CACCGTCCTGGCCTAT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCCCAAGCTAGGG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTTAATGCGCCTCCTG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTCATTTTGCAC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TATTGCGTGTGCTTCC	alt_1116_fdr	38	19	34	28	34	35	25	40	26	37
TCTAGCTGTCGCACAT	alt_1116_fdr	29	42	48	49	39	53	34	27	30	35
GGCTATTTGGTACGTA	alt_1116_fdr	41	28	32	37	32	26	29	27	32	24
CTTACGTACCTCTTAG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGTCAGTTTACGG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGCCCGTCAGCGG	alt_1116_fdr	26	21	19	24	18	14	17	15	12	25
CCCCGCGCTCTGGACA	alt_1116_fdr	10	17	20	18	21	17	17	14	9	14
TCGCACCTTTATGCGG	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
TTTCAATGACAGTGGC	alt_1116_fdr	49	36	64	62	43	46	53	47	51	37
TTTTAACGGAGAGTAA	alt_1116_fdr	7	8	3	5	8	2	11	10	7	8
TGCAAATCGATATTAT	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCTATCTTTTGAA	alt_1116_fdr	1	2	0	1	1	0	0	0	0	0
ACGCGGCACAACGGCG	alt_1116_fdr	24	22	24	25	13	30	31	21	22	23
TGGTGGCATTTTTCTA	alt_1116_fdr	27	11	26	27	16	23	23	18	23	23
GACAGTTTGAAGCAAG	alt_1116_fdr	0	0	1	1	1	1	0	0	1	1
TTATAACCCCCACAAC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTGTCATAATGG	alt_1116_fdr	20	23	43	36	21	29	25	25	21	23
CCGTCATTCATGCTTG	alt_1116_fdr	3	21	2	4	25	2	36	2	23	0
TAGGCTCGAATGACAC	alt_1116_fdr	14	6	16	16	4	12	19	19	12	15
TTGTGGATTGCCTGAG	alt_1116_fdr	23	9	17	14	13	18	16	13	14	9
GTTCATTGATCGGCAC	alt_1116_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCGCACCGGCTCT	alt_1116_fdr	114	85	136	107	84	104	101	116	91	116
GTATAATACATAATTT	alt_1116_fdr	36	40	43	36	21	26	32	55	35	38
GGCTCTGGTCATCCCC	alt_1116_fdr	16	16	18	26	12	18	20	11	20	14
CTCGATCGATGCGTAT	alt_1116_fdr	87	57	65	54	53	43	57	40	65	43
CGTGGCTGTTGATTGG	alt_1116_fdr	28	24	48	32	38	27	17	42	34	33
GTAGCGTCTAATACAG	alt_1116_fdr	33	26	30	28	26	28	23	29	24	25
GACTACACACGAATTC	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
TCCTACGTGTTACCGC	ref_2295_fdr	25	22	25	25	52	30	46	31	35	32
GCAAGCTTCTGTTATG	ref_2295_fdr	11	7	19	14	14	6	10	11	8	12
CGCTGCGTTTTTCCGG	ref_2295_fdr	52	32	47	40	44	31	31	52	32	32
TAAGTTAAGACAAGAT	ref_2295_fdr	61	68	65	68	63	81	73	39	81	46
AATATATCATTTTTTT	ref_2295_fdr	84	54	98	68	66	79	59	84	90	58
TGGTAGGTCACGAGGT	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
GCTTGCGGATTGAGTT	ref_2295_fdr	45	43	74	45	70	56	69	51	61	77
AGAGTACGGGTCTTTT	ref_2295_fdr	20	15	18	15	19	11	13	10	21	13
TGCGGCAGGTCGGGAT	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCGTCTATTATTG	ref_2295_fdr	18	17	16	15	20	17	26	16	21	19
AAACCTTTGTGGCTGC	ref_2295_fdr	51	37	58	54	47	40	47	42	43	43
GTCTTATATTTCTGTC	ref_2295_fdr	15	21	28	19	15	19	25	17	19	12
TCTGACGGAGACGCGC	ref_2295_fdr	1	1	5	0	3	2	6	2	8	1
CATCCACAGGTCTGAT	ref_2295_fdr	30	20	28	20	26	26	21	19	31	24
AATGTATGACTTTTGT	ref_2295_fdr	43	46	62	44	51	52	41	35	40	41
CCGGTTTCCGGCTTCA	ref_2295_fdr	25	33	29	26	21	34	29	23	12	29
ACTCGGACGAGCTTAC	ref_2295_fdr	276	276	365	284	262	290	265	268	253	231
TCTGACGGTCTGTAGG	ref_2295_fdr	16	24	31	26	38	25	18	27	41	27
GTACGCAATAGGTCGC	ref_2295_fdr	15	18	11	15	24	14	11	28	32	5
TCCTCGGGTAATATTA	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
ACACCTTTTACAAAGA	ref_2295_fdr	0	0	0	0	1	0	0	1	0	0
GCCAGGCATCCCGCTT	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
GCTACGGCACGGAACG	ref_2295_fdr	5	9	6	5	4	6	1	5	7	9
AAGGCATTCCTGTGGT	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGCAGTATTCGCA	ref_2295_fdr	8	11	19	16	10	10	17	11	13	20
TCATGACTTTCCGCCG	ref_2295_fdr	8	3	7	3	6	3	7	9	9	8
AAGGCCGTCGCACCAC	ref_2295_fdr	38	37	51	41	36	36	31	51	47	39
GTGTGTCTGCTACTTC	ref_2295_fdr	116	111	119	151	110	103	105	106	113	126
GCTGGTTGAAATTTGC	ref_2295_fdr	79	64	89	65	70	70	70	51	83	60
TCTGGTGTGTTCCTGG	ref_2295_fdr	16	11	22	21	24	13	18	21	18	23
TAGGTATCGGCTATCA	ref_2295_fdr	3	2	1	4	2	4	6	4	0	0
TGTTCGGTATGGTGTC	ref_2295_fdr	41	33	45	40	36	45	47	43	30	33
ATTATTACTGAAGCTC	ref_2295_fdr	8	7	13	9	13	12	17	8	14	7
GTCTGGAACCTGACAA	ref_2295_fdr	42	36	39	26	30	35	34	27	35	29
CTCGGGCACGCGCCAG	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
AAGCCACAGGGTAAAT	ref_2295_fdr	14	9	12	15	14	7	18	7	13	11
TGCCATTTTTCGACGT	ref_2295_fdr	7	14	11	5	9	5	4	14	13	3
TTGTTTATTGGTTATG	ref_2295_fdr	9	10	11	9	11	6	9	12	10	9
ATTACATTGGGGTAGA	ref_2295_fdr	7	6	11	8	6	6	19	5	8	16
GTCGGGACATTGAGGC	ref_2295_fdr	18	9	19	20	18	22	14	19	18	14
CGCGACGTTTTATTCA	ref_2295_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTATCGCATCGGA	ref_2295_fdr	46	40	38	35	21	40	47	35	49	31
TCGCATAATTAGCTTT	ref_2295_fdr	83	78	80	58	63	60	50	66	60	48
CGCCTAACTCCTGGGT	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
GCACAAAATCGCTCAG	alt_829_reverse	85	74	96	84	107	100	66	71	75	64
CTTGCATCAAAGGAGC	alt_829_reverse	303	272	347	289	269	307	269	271	282	241
TCCGAAGATTTTCAAC	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
TTCAACCGAATCGATG	alt_829_reverse	62	68	65	83	35	58	70	51	62	77
CGCGGGTAGCTTGAAT	alt_829_reverse	35	23	36	24	29	32	25	23	25	37
GCTCGCTACGTGGCGT	alt_829_reverse	50	43	64	39	40	35	40	29	33	40
CTAGTAGTACGCTTAC	alt_829_reverse	18	24	26	27	29	22	25	17	21	18
TGGCGTTTCAACCCAG	alt_829_reverse	19	17	24	19	14	15	22	15	15	18
TTAGGGATATGGTCCC	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
CACTAGGCTCCGATCC	alt_829_reverse	23	36	35	31	35	27	34	16	34	24
CTAAATCCGCGCGCCA	alt_829_reverse	29	22	21	18	22	15	21	10	13	19
AGCGATATACTTTTGT	alt_829_reverse	33	34	50	42	37	44	22	32	48	34
TGTGCTCCCCTTGCCC	alt_829_reverse	75	75	97	80	126	68	106	50	104	60
AGACGGCAGAATGTAG	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCGTTCGGGGGTT	alt_829_reverse	18	36	31	27	20	26	31	25	28	29
TGCGGGTGGTATGCAA	alt_829_reverse	20	21	34	30	19	27	17	24	17	25
TTTGTTCACAGCCTCC	alt_829_reverse	30	37	71	47	30	34	52	46	39	46
GTTACGCATTAAAGGT	alt_829_reverse	27	28	22	18	22	21	26	22	30	19
GGCGCGATTTGCAAGT	alt_829_reverse	27	19	27	19	18	26	19	22	21	23
CCCGCCCTATTTTCAA	alt_829_reverse	103	72	111	90	80	85	89	71	92	75
TACAAATAGATTCCTG	alt_829_reverse	112	91	134	114	95	103	96	105	107	106
TAAATGTCCCCCTTTG	alt_829_reverse	151	116	152	142	128	131	133	139	129	129
AAATTTGGTTTAGTTA	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
AAAACTGAGACGTGCG	alt_829_reverse	1	2	6	0	3	2	2	1	1	2
GAGTAACCTCTGCATA	alt_829_reverse	18	15	15	16	11	14	11	11	29	17
TTGGGAGAGCTTGAGT	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGATCACTTTCAA	alt_829_reverse	60	47	73	59	58	44	44	60	46	49
GGATCTCCTTTTTAGA	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
ATAAAAATGAAATATG	alt_829_reverse	45	28	32	26	31	25	24	16	15	29
GTTATAACTCAACAGA	alt_829_reverse	29	23	37	26	29	28	13	31	25	22
CATAACGTGCACTGGT	alt_829_reverse	57	53	60	50	50	55	61	73	55	54
CAGCCTCCTACTGGTC	alt_829_reverse	1	0	2	1	1	0	2	3	6	1
CTCACGGTGACTTCTG	alt_829_reverse	0	3	1	2	4	3	4	3	2	4
TGAGTTCAATTTCGAG	alt_829_reverse	16	13	11	10	8	8	11	10	17	12
AAGTTTGGTACCGGAA	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTAGTTGGCAACG	alt_829_reverse	41	25	42	32	42	39	44	24	35	30
GGGCTCCTTACTTAAT	alt_829_reverse	79	60	93	64	62	67	65	60	66	74
CGTAGAAGAACAGATC	alt_829_reverse	14	17	17	13	12	9	16	12	9	23
TCCGGAGCCCGCTGAA	alt_829_reverse	78	42	81	54	59	65	66	56	63	44
ATATATCAGCTCTAAT	alt_829_reverse	14	24	23	18	24	17	13	21	21	16
TGTCGAATTCTGTGCT	alt_829_reverse	90	62	91	96	43	75	64	68	63	73
TCCCGATATTCTGTGA	alt_829_reverse	16	42	8	24	36	12	29	25	33	13
TTGGTTTCACACGCTT	alt_829_reverse	27	42	39	26	23	42	31	30	25	31
TCTTTATGTGCATCTA	alt_829_reverse	35	13	28	25	29	12	22	16	24	26
CAGGATTCAGCGGATC	alt_829_reverse	8	6	3	7	5	4	9	1	7	4
TAGTCATTTTACGTTC	alt_829_reverse	36	41	49	39	26	30	28	35	24	27
TGCCGCGTTCTTCAAG	alt_829_reverse	24	15	21	19	15	19	28	26	19	16
AACAATTGCTTCCTCG	alt_829_reverse	45	43	37	58	45	39	46	40	38	36
ATTCAGCTATAGTTCG	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACAGTTGCAAGT	alt_829_reverse	8	12	9	8	3	6	14	3	15	6
CTTTCATACCGCTATT	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTGAGTCATCTTA	alt_829_reverse	150	104	147	129	96	161	100	135	126	123
CAAAGGTTAATTGACG	alt_829_reverse	62	61	88	69	70	72	78	65	75	54
AAGTCCGTATTTAGCA	alt_829_reverse	17	27	14	6	21	12	14	20	19	19
ATGTTGCGACTATAGA	alt_829_reverse	5	4	3	4	1	5	3	2	2	6
CTATTCAGGTGGGAAT	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
GGCGAGGATTATGTCT	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
TATTTATGGTAATCCA	alt_829_reverse	11	9	23	10	12	19	11	9	13	15
GCCCTGAATAGGGCAA	alt_829_reverse	38	19	28	29	20	21	22	26	30	33
AGATAGCATGCTCCTC	alt_829_reverse	17	25	18	20	15	15	23	16	13	11
AACAAATTTGCTCTTC	alt_829_reverse	31	19	40	21	16	25	35	25	29	26
GAAAAATTTTACTCTC	alt_829_reverse	12	11	17	10	13	12	9	16	11	15
TTTTGCGGCCCGTTCC	alt_829_reverse	49	38	45	45	36	34	36	58	26	40
CTTGCATCAGAGGAGC	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTCCTCGTCGTCA	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTCCTCCCGGCTA	alt_829_reverse	20	26	24	20	26	29	19	29	34	20
AGAGGAGCTTTCCATA	alt_829_reverse	185	200	273	203	167	196	200	195	245	165
GGTCATTCGGTTCCTG	alt_829_reverse	67	80	71	70	76	74	72	53	65	51
CCACGGCGATGAGTAA	alt_829_reverse	48	64	51	53	50	58	48	59	53	48
TAGACCCAATGTGGAA	alt_829_reverse	14	9	11	12	17	9	7	14	16	14
TATGGAAGTATTTTGT	alt_829_reverse	86	73	117	92	87	86	67	71	71	78
CATCTTTACCCATGGG	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
TTAAATGCCTAGTACT	alt_829_reverse	53	34	52	46	53	42	47	51	51	31
CGTCTATTGTCGCTAC	alt_829_reverse	0	0	0	0	0	0	0	0	0	0
TGGGGACTGCATGCCT	alt_829_reverse	30	21	23	17	15	17	22	13	21	14
GAGGCACTTTTTTACG	alt_829_reverse	46	44	70	72	37	56	50	55	61	56
GGTGGTCTCGGGTGTG	alt_829_reverse	141	140	163	141	105	166	146	128	130	151
TTCACTCCAATCGTTT	alt_4770_missing	20	7	21	31	22	17	21	20	18	25
GTCAATACGTGATTTT	alt_4770_missing	30	16	22	28	10	19	10	18	9	21
AACCTGAAAATGATCG	alt_4770_missing	175	62	180	153	79	138	84	135	73	151
GTGATTTTCGATAGCT	alt_4770_missing	119	61	146	121	57	98	77	123	67	113
CTTCTGCTTTTCCCAA	alt_4770_missing	0	0	0	0	0	0	0	0	0	0
TCCACTTAATGCCGTT	alt_4770_missing	78	50	98	85	37	61	38	65	44	70
GACGCATTAGGGCACT	alt_4770_missing	46	26	66	46	16	43	21	48	30	48
CCTATGTGTCCTCTCG	alt_4770_missing	51	46	62	56	41	43	45	55	46	51
CGTCCGGCAGCTCCTC	alt_4770_missing	122	36	141	106	64	77	43	93	39	96
ACTCCATAAGGCGTTT	alt_4770_missing	0	0	0	0	0	0	0	0	0	0
GAGCTAATATGGGGCC	alt_4770_missing	36	13	34	40	11	27	14	27	16	30
TCTTAATTAAGTTTTG	alt_4770_missing	0	0	0	0	0	0	0	0	0	0
CTTTTTGGTTCCCGTT	alt_4770_missing	205	91	269	242	132	206	135	204	130	209
ATAGCTTCCTGGGTAG	alt_4770_missing	16	7	24	30	9	23	10	11	12	22
TCGCGTCACAGCCGAA	alt_4770_missing	0	0	0	0	0	0	0	0	0	0
AGTGTCGGTTGTTAAC	alt_4770_missing	0	0	0	0	0	0	0	0	0	0
GGAGGTTCCGACTTGG	alt_4770_missing	87	39	104	58	35	75	33	63	30	52
GGTAATTCTAAATCTA	alt_4770_missing	76	35	92	85	47	67	51	80	57	74
CGTGCCCGTGTAATTG	alt_4770_missing	51	21	68	72	26	56	29	29	24	44
TCACCTGGACTGCCAC	alt_4770_missing	0	0	0	0	0	0	0	0	0	0
GTCAAACGTACTCTGG	ref_4770_missing	165	83	228	191	100	179	82	189	98	168
GGGGTATAGGGAAGAT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTACGTTCCAC	alt_5960_new	7	2	2	2	2	2	2	3	3	3
CGAGACAATGGGGGTC	alt_5960_new	7	7	9	5	7	12	15	5	5	6
CTGACCCGAGCATTAG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TTCTTTATATGAGTGC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TTACTTTGCACATGTG	alt_5960_new	15	14	9	6	17	7	20	10	11	5
GGGGTTAAATAAGTAT	alt_5960_new	30	39	29	27	34	26	22	16	24	30
TTATTTACTATCGGTT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TCGGTCTGTCATCCAT	alt_5960_new	7	6	9	6	6	13	14	6	12	5
GTAATTCTTATATCAT	alt_5960_new	1	0	2	0	1	3	3	3	3	0
ATTGTCACACAGGATG	alt_5960_new	8	14	7	10	9	5	10	7	13	3
AACCTTCATAGCTCCT	alt_5960_new	231	279	250	235	296	209	279	189	291	177
GTCAAGGAAGAAACCT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
ACGTTCTGTCTAATTG	alt_5960_new	12	19	20	19	20	13	26	13	32	11
TGATATTATAGCTTTC	alt_5960_new	55	54	53	53	59	37	64	43	45	38
GTTCCACCCTCCATCT	alt_5960_new	5	0	9	5	6	2	9	4	6	4
GCAAGTAAGGTGTAAA	alt_5960_new	1	4	4	0	1	3	1	0	2	3
TCCTCTATGGGGCAAG	alt_5960_new	26	28	36	21	37	26	23	22	33	18
GGTGACTGCTTTCGAG	alt_5960_new	67	69	65	46	64	45	83	59	76	38
ATGGGGCAATCCCCGC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TTATTTCCTCGATTTG	alt_5960_new	11	20	23	19	39	18	28	22	32	19
CACGATGCATTCGCTG	alt_5960_new	23	27	35	29	34	18	22	24	29	23
CATTACTATCTTTGAT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GACTGCCTCCGTGCCC	alt_5960_new	11	16	19	24	24	22	18	8	23	26
CGGACCTTTATGTCAA	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CCTGACATGCTTCTCA	alt_5960_new	27	57	32	31	41	25	55	12	54	20
ATACTTTTAAGCAACG	alt_5960_new	34	45	44	37	27	28	48	39	46	17
TCCGATCTTTCCATTT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TCTCATCGGTGTTTGC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
AATGATAGCGAGGGTA	alt_5960_new	21	13	11	12	9	11	12	14	10	13
TCGAACCCGCGTCTAG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
ACTCCTTTATGTATTA	alt_5960_new	40	60	55	39	59	36	70	37	73	35
TGGGGATACCTTTATA	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TGTGTCCATGAAAACG	alt_5960_new	27	43	21	25	43	23	23	31	53	18
GTCTGACACTACGAGG	alt_5960_new	12	17	15	12	20	15	18	16	22	11
TCAGGTGACTATCTCT	alt_5960_new	5	13	11	11	20	4	14	15	12	9
CGTTGCCGTCCGATAG	alt_5960_new	23	17	11	9	24	10	18	20	14	17
GCCGACTCTTAGCGTA	alt_5960_new	26	36	32	16	31	22	42	22	20	20
CGCACTTTGGGCGCGG	alt_5960_new	17	23	24	11	18	7	22	24	25	11
TAGCAAGAAGGCCCTA	alt_5960_new	20	35	23	25	45	15	35	17	38	32
CCCGCCATTTTATTCA	alt_5960_new	23	35	26	19	35	33	41	22	45	10
AGCATACGTTTATACA	alt_5960_new	8	9	19	7	12	9	13	8	13	8
TGGGATCGCTTTTTGT	alt_5960_new	17	28	12	21	18	22	28	12	15	10
TCTCATATCTTGTCCA	alt_5960_new	14	16	20	16	16	21	21	17	19	23
CCTTATATCACGTGAA	alt_5960_new	0	0	0	0	0	0	0	1	0	0
CTCGCGATCCGCGTGG	alt_5960_new	13	25	22	34	21	20	39	23	29	15
ACGAAAATGTCCGGCT	alt_5960_new	99	103	104	100	114	88	103	114	103	90
ATGGTAGCTAGTGGGG	alt_5960_new	4	2	3	2	3	5	10	4	7	1
CTACTTGTATTATTCC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GTTAGTTGCGAGTGCC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GTACCCGTTGTCCTCG	alt_5960_new	18	22	12	18	14	16	34	11	20	14
TTACAAGCCAAATCCT	alt_5960_new	90	117	98	87	112	74	113	95	112	77
TCGGGACATCCTAACG	alt_5960_new	50	51	61	52	63	37	62	43	68	45
CCTTGTTTTTTTCAAA	alt_5960_new	16	24	21	19	29	19	29	19	22	12
GGCGTTGCGCATGTCC	alt_5960_new	129	151	170	138	126	113	150	111	159	109
TGGTAAGTCTAAGGCC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TAATTTCAGCTCAGAC	alt_5960_new	0	0	4	0	3	2	5	0	4	1
TACCCGGCATCACAGC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CTGTCGATGTTAACAG	alt_5960_new	26	37	28	26	37	17	23	20	22	25
TGCACTCAGGTTAGAT	alt_5960_new	33	38	38	28	43	14	28	22	46	10
GTTTCAAATTGTTCCC	alt_5960_new	52	70	66	47	76	57	82	50	78	57
TGGGGTAGTTAACGTG	alt_5960_new	5	16	19	12	18	12	16	13	13	9
GAAAGAGTGTGGACTG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CATGTTTATCGTCTCG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GAATAGAAGGTTATCC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CGTTTCGACTTTCGTT	alt_5960_new	88	99	102	88	100	63	99	66	104	79
GTGGGCGTATTTTTTA	alt_5960_new	9	16	19	19	18	18	28	15	18	17
GCTGTTTATGCAACCT	alt_5960_new	13	29	23	18	26	20	32	20	32	14
TGAGTGTCTACTCCCT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GTTCACGTTCCTTCGG	alt_5960_new	34	49	44	31	51	35	36	25	65	21
TACGGTTAGCCGGATC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GGGCATAGACCTTTTA	alt_5960_new	21	41	33	26	49	33	43	22	53	29
ATTCGACAAGAAGGGC	alt_5960_new	15	13	18	10	17	24	13	12	20	16
AATGTTTCCGCGTCGT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CTTCGTGTAATTTCGT	alt_5960_new	40	48	38	45	49	35	52	43	58	42
CTGCCTCTTCGCGCTT	alt_5960_new	5	5	6	3	7	5	7	2	8	3
TCTGTATTAGTGCTAT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
ACAATGGATATAACAT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GTGTAGCATGAAAAAG	alt_5960_new	1	3	3	0	3	4	2	5	4	5
TCTATTCAAGCATTTT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TCGGTTATTAAGTTTT	alt_5960_new	8	14	22	15	23	12	5	12	18	17
TCACCGTGCAAAGAAA	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CTGCTTCTAGTATCGA	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TGGATTTGCGGACATC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCAGGTTTGTC	alt_5960_new	70	91	102	58	93	85	85	68	102	68
CGGTGCTGATGAGAGC	alt_5960_new	36	67	53	39	69	27	61	50	63	24
TGTAGGCTTCATAGAG	alt_5960_new	23	46	18	28	42	16	39	34	42	30
CGACTTGACGGATACA	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CGGTTGCCATGATATG	alt_5960_new	2	8	3	1	1	1	4	7	0	2
GGGATCCTCCTTGGTG	alt_5960_new	51	48	39	35	54	23	53	27	53	25
AAGTGCAGCAATTTTC	alt_5960_new	8	15	12	12	12	12	15	15	7	5
CTTCTAAATATGGCAT	alt_5960_new	3	18	8	7	7	7	13	11	11	11
GTTGTTCGATTGATGC	alt_5960_new	16	40	23	20	24	15	33	15	34	13
ATTCTGGGTATTGGTC	alt_5960_new	10	11	12	9	12	15	12	9	17	7
TTCATGTAGACCTGCC	alt_5960_new	53	92	62	55	55	51	89	47	71	38
TGTATCCAGGCGGCGT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
AGTCAGGGTAAAGATC	alt_5960_new	1	1	3	1	0	0	0	1	1	2
GTCGCGGCTTTAGTGG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
ACTTCCTGTGACGGCC	alt_5960_new	11	17	17	15	20	12	20	9	29	19
TGATTCCGTATCAGGG	alt_5960_new	16	23	22	14	21	14	22	14	32	21
GTGAGTTTCACCCTCC	alt_5960_new	15	11	9	7	18	7	13	4	15	3
ACTATGGATATAACAT	alt_5960_new	71	88	82	71	58	65	80	70	84	70
GTTACATGGCCCCACG	alt_5960_new	53	59	61	49	63	56	66	61	65	46
GCGCAAGTGCGATTTT	alt_5960_new	87	117	94	87	97	70	110	70	126	78
TGCCTAGCCTCACTTA	alt_5960_new	31	55	42	26	47	26	39	21	43	19
CTTCTTATTCAAGGCG	alt_5960_new	3	4	7	10	6	7	10	6	5	8
AACACTGCTTGCCAAA	alt_5960_new	11	31	17	17	28	24	35	12	24	13
TCCGAAGCTATTCCAT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CCTGAGCACATCTCGC	alt_5960_new	30	24	39	16	42	23	41	37	34	30
AACGGCCAGATATCGT	alt_5960_new	21	22	6	14	34	13	25	10	25	8
GGCCTCTCTGGTTGAA	alt_5960_new	66	69	66	60	52	75	73	74	84	64
GTGTGTCGGCTAAGTA	alt_5960_new	19	27	23	14	20	11	28	18	29	15
TCCCATGGCATTCCGG	alt_5960_new	50	38	67	39	50	47	50	25	54	43
AGCGCGCGATTAGTCG	alt_5960_new	13	13	16	16	23	23	19	23	18	17
AATTTATAGGCTAAGG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GTCTGTTTAGTGTTCA	alt_5960_new	11	20	10	13	14	9	10	5	19	10
TGTTTTTCGCTCATTA	alt_5960_new	58	85	81	77	93	44	85	48	91	67
TTTTCCTATGGCACTA	alt_5960_new	50	50	53	38	36	36	60	36	61	28
CGGGTCTATACCGTCT	alt_5960_new	8	10	7	2	3	5	16	6	14	6
GCTTCTTAACATCAAC	alt_5960_new	17	27	25	20	24	17	32	18	32	14
TCGAGGATTGCCTAAC	alt_5960_new	26	37	30	29	37	32	46	31	51	24
CTCTGTTTTCCGTGCG	alt_5960_new	28	66	28	25	31	27	39	28	48	18
GAAGCGCCAATGATAG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
ATCAGTCTGAATGTAT	alt_5960_new	13	34	22	23	22	17	34	11	22	22
ACATTCAAGTTGTTTG	alt_5960_new	13	11	14	20	15	13	9	8	22	14
GCTAGTCAGCAATGCA	alt_5960_new	27	41	17	26	33	20	27	35	40	25
TGTCGGCGCGGGCTTG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GTGGACAAAATTTACG	alt_5960_new	78	114	108	113	119	91	166	81	160	105
ATAAGCAAGTCTTTAC	alt_5960_new	45	38	33	30	58	19	52	38	52	33
TCAGAGATGTCAGACA	alt_5960_new	12	5	9	6	6	9	5	2	22	4
TAGAACCTCGTCTGTA	alt_5960_new	36	64	50	43	52	32	57	39	51	44
TCAGGATCCGTTTTGA	alt_5960_new	35	29	39	39	37	50	35	44	40	34
TTCCTCGTAGCCCTAG	alt_5960_new	7	17	20	10	19	12	14	9	20	12
TGAACAAATTTATTTG	alt_5960_new	7	4	4	3	3	4	7	6	9	7
GACCCAGGTTTTATTT	alt_5960_new	15	33	16	9	16	16	20	17	26	13
GCGCCTTCTTTTATGT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TATATATGATGCCGAG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
GGAACATCTTTTTTTT	alt_5960_new	10	5	16	17	10	8	17	11	19	15
TAGGATCACTAACGGG	alt_5960_new	5	2	2	1	1	5	3	0	3	0
GCGGATTCCCTACTAA	alt_5960_new	26	30	19	20	27	15	20	19	24	8
CTCGTGAAAGATCTGG	alt_5960_new	120	126	122	97	147	95	128	79	130	88
TGGGTATGGTTAGTGC	alt_5960_new	4	6	4	0	2	2	3	5	6	2
CCGGTTGATACGCCAA	alt_5960_new	79	127	71	69	118	73	134	86	137	50
GGGAGATCGTAGACGT	alt_5960_new	2	2	1	2	1	1	0	0	0	0
ATAGAACTGTCCTTTC	alt_5960_new	0	0	0	0	0	0	0	0	0	0
AGTCCAGGTTTACTTT	alt_5960_new	40	54	81	70	69	40	91	67	73	59
GGTTGCACAGTTCTGT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CCTGTCCGGAATCTAT	alt_5960_new	29	52	42	20	51	23	48	23	52	28
CGTTTATACCGTAGTG	alt_5960_new	2	9	2	7	7	8	9	7	5	2
ACTTTCACGGGAGAGT	alt_5960_new	0	0	0	0	0	0	0	0	0	0
TCATATTAACCTCGTC	alt_5960_new	24	16	22	17	20	10	14	15	20	14
TGGATACATTGTCCCG	alt_5960_new	0	0	0	0	0	0	0	0	0	0
CATTATACCTGTCGAG	alt_5960_new	52	80	73	51	82	70	78	47	94	61
TAGTAGTCGTATGAGT	alt_2027_RC	15	12	30	23	11	16	14	16	14	21
AATTATTCTTTGGTAA	alt_2027_RC	7	5	9	15	8	9	2	10	3	8
TTTACCGACTTCGGTC	alt_2027_RC	89	46	114	110	42	72	44	104	49	78
TGGCCTTATACTTCCT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GTGAGCGTCGTTCCAC	alt_2027_RC	11	17	16	9	20	11	22	22	24	10
TCATTATTAACGAACC	alt_2027_RC	75	54	92	74	52	49	50	64	54	67
CTCACTAATTTTCCAC	alt_2027_RC	16	9	13	13	7	9	15	3	16	7
GATATTTGCCAGCAAA	alt_2027_RC	11	13	16	13	8	16	14	15	11	7
CATGCGAATGAGGCCC	alt_2027_RC	86	51	88	68	48	80	49	54	45	87
TTATGCGCTTGTAGTC	alt_2027_RC	19	3	16	18	18	27	9	21	10	10
CACCGTTTTTCTGGCC	alt_2027_RC	95	117	131	88	109	81	79	91	87	80
GTATGGGTGGGCTCCC	alt_2027_RC	251	176	329	281	185	273	183	264	196	258
TGAGTCATATCCTTTC	alt_2027_RC	35	21	36	42	15	34	12	21	8	33
GTCCGAATCGGGGTAT	alt_2027_RC	24	6	28	20	18	29	7	23	12	17
CCGGCGTGGACTTATA	alt_2027_RC	61	48	69	61	38	55	36	53	41	45
GCCAGGAATTTCTCCC	alt_2027_RC	14	15	25	15	14	27	26	22	15	20
TTTACGGGTCATTGAG	alt_2027_RC	63	52	125	76	50	85	59	75	52	80
TAACCCCATTGCATTC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GTAGTTATTCAGTGCT	alt_2027_RC	28	14	29	26	20	30	24	20	29	25
ATCGGGTTGGGTAGTT	alt_2027_RC	22	13	24	18	13	15	17	23	18	23
GCCTCTAGAACAGTTG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
TGAGATCACGCGTTTT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TTAGGCCTTTTTTTTC	alt_2027_RC	16	10	25	18	10	25	18	24	7	21
TAGACTGACTGACGAG	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GACGCTACGACCCGAT	alt_2027_RC	7	2	18	7	6	13	4	4	6	10
TCGTATGGGTTCTTGA	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GATGGCGAGTTAGATG	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GGCATGACCTGCCCCT	alt_2027_RC	62	47	63	53	48	59	26	55	50	59
GGGCCTTTAAAGCTAA	alt_2027_RC	153	82	159	131	81	119	88	109	103	116
CAGATGCTGCATATCC	alt_2027_RC	11	4	7	14	3	14	4	8	4	6
CTGGATCAAGTGTAGC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TACAGGGTGTTCTGGT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CGGCGTGATGGTCGAC	alt_2027_RC	19	13	42	17	15	21	16	15	13	29
GGTGCATTCTGTCTCG	alt_2027_RC	159	124	215	149	105	149	108	125	126	143
AGGCCCTAGTTTTTCC	alt_2027_RC	73	47	101	95	37	68	37	64	60	84
AAAGAATAAATATCTC	alt_2027_RC	255	136	268	210	114	242	160	203	146	215
ATAGATATTTGTAATT	alt_2027_RC	89	55	138	112	64	89	56	122	63	71
TGTCTTCCCCTTCTCT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GCCAATGTGCTGCATA	alt_2027_RC	147	89	184	127	92	138	103	125	78	99
ACCCAGGGTCAGACGC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TGTTAGTAACACACTT	alt_2027_RC	119	80	140	116	80	91	90	125	83	110
GGCTTGAGGACGCCAG	alt_2027_RC	79	42	84	71	47	56	41	49	47	47
AGCGTATCCTATAAGT	alt_2027_RC	8	5	5	8	5	4	3	11	5	6
CTAATTCCTGGAGCCC	alt_2027_RC	64	37	59	57	37	71	40	69	39	49
TTGAACCAGATGGCCC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CGTACTGCTTTTCACG	alt_2027_RC	27	9	22	29	9	24	19	23	16	16
CACAACTGTGCTCGCG	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TACTTGCGGTCGATAA	alt_2027_RC	40	15	43	28	17	30	16	11	11	26
TCTTTTCAAACCAAGG	alt_2027_RC	101	65	154	100	77	95	66	98	49	94
GACGAATGATTCTCAC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CAACATGGTCATTGAT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GGCTTGTACATACCCA	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
ACTAAGCCACGAACTG	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
AAGCCTTTCCGAGGTA	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TTTCAAATCGAGGATC	alt_2027_RC	67	37	88	67	47	80	46	63	46	67
TGTTCTGGCCTTCAGC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTCTTATGCGAT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CCACTATTTCTTTCGA	alt_2027_RC	33	31	52	37	21	29	25	39	23	38
GTCGCTTATGTCGATC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CAATTCTTTTAGTTAG	alt_2027_RC	151	92	168	124	69	107	71	126	94	118
GTGTTATCCTATACTC	alt_2027_RC	33	19	50	39	23	22	25	22	25	40
GCCTTCCCGACTACTT	alt_2027_RC	2	2	4	3	6	5	5	5	3	5
TAACAAGGCAAGCCTG	alt_2027_RC	239	182	344	274	182	290	165	272	176	261
GTATACTGAGTCCCTT	alt_2027_RC	110	74	166	133	79	121	77	115	65	99
ATCCCTGCTGAGGGTG	alt_2027_RC	32	33	43	38	37	43	27	31	38	38
GGGTGAGGGAGTCTTC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
AGGCTAGTAGGCAGTG	alt_2027_RC	64	33	61	58	26	46	24	54	46	50
GATTGTACGTCGTATC	alt_2027_RC	126	63	108	99	64	105	77	88	72	70
TGCCGTCTTTTTCCTC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TCCTACGTATCTGGTC	alt_2027_RC	116	55	119	101	61	105	71	111	68	99
TGTACGTGCGTTTACT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TCGCAATCCGATTTCG	alt_2027_RC	37	15	42	29	24	30	23	36	26	29
ATGTCTGCCGTGACCC	alt_2027_RC	47	55	59	62	60	40	50	50	57	28
ACGACCTGGGTTCCGT	alt_2027_RC	71	41	80	75	48	86	54	55	57	65
ACGTCATAAGGGACAC	alt_2027_RC	21	13	20	18	10	14	10	22	13	18
GATTGTAGTTTAAAAT	alt_2027_RC	8	6	11	10	5	6	12	9	10	16
CTATATCCGGTATCTC	alt_2027_RC	9	1	3	6	2	9	3	2	2	7
CTGTATATTATTACGT	alt_2027_RC	61	30	54	48	24	78	22	51	36	64
ATCGATCGATTTATTA	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CGTTTAGTTTACCATA	alt_2027_RC	41	24	52	32	40	39	33	37	28	31
GTGCTCCAACAGGGTT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GCGCCTAGTAACGTAG	alt_2027_RC	12	15	11	5	19	11	5	7	15	11
TGTCGCGGTTGCGTAT	alt_2027_RC	25	9	21	14	10	14	15	19	15	24
TTCGAGTCCTCTTTGT	alt_2027_RC	71	22	47	54	36	58	28	46	31	36
TGTCTGCGGACTTTAC	alt_2027_RC	41	19	34	44	19	29	27	31	21	27
CGGCAGGATCTGTACA	alt_2027_RC	46	21	62	49	34	48	18	44	35	39
TTTTATGGTTGGTGGC	alt_2027_RC	278	154	345	297	179	262	170	253	160	245
TAGGGCCGGGTCACCG	alt_2027_RC	111	57	136	95	72	107	76	93	71	93
CCTCGTTGTTCCAACC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TACGGACATCTCGGAG	alt_2027_RC	9	8	21	19	5	20	6	13	8	14
TTCTTGCCTCATACGA	alt_2027_RC	66	42	73	52	47	46	52	49	42	46
TTTAACCATATATAGA	alt_2027_RC	194	169	250	196	172	143	166	155	198	166
CATAGTTTGTGGCGCT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CATACTGGTTGTATCT	alt_2027_RC	21	17	35	24	17	27	15	31	25	19
TCTGCGTTCGTCCCCG	alt_2027_RC	119	80	124	135	96	106	79	96	94	87
CCTTGGCCTGTGTTGA	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
AGCCAGCCTCGCGTCT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GCAGGTCAATCTATAA	alt_2027_RC	15	10	14	17	6	9	10	15	11	6
AGTGGCGCAACAGTCT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TTAAGAGGTTACGGAC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TTGTTAACTTGTCGTT	alt_2027_RC	575	286	684	555	307	564	308	495	297	467
GTGACCATATTTCATG	alt_2027_RC	97	41	116	121	64	104	72	117	75	73
GGTTTCAAAGGCACTT	alt_2027_RC	12	3	14	10	12	6	17	13	7	12
GCGTTATGTCTCAACG	alt_2027_RC	46	29	57	38	25	43	25	42	26	32
TTTTGCTGGGATCTGT	alt_2027_RC	153	102	178	165	94	147	107	116	128	143
AGGTTTGAGCGTTCAT	alt_2027_RC	10	3	17	14	5	8	5	7	8	12
AACGAGGTAAGACACG	alt_2027_RC	484	274	573	476	243	489	249	448	267	461
TCAGTCCCTCCGTTCT	alt_2027_RC	45	25	38	26	32	19	37	34	37	20
CCATGGTCAGAGCGAC	alt_2027_RC	46	37	69	48	35	59	27	46	31	45
TTTCAACGAAATCGGG	alt_2027_RC	141	79	182	144	75	139	72	145	82	114
GAGCGAACGGTACATA	alt_2027_RC	41	21	44	47	32	39	23	48	31	30
GCCCTGATTGTGTTAG	alt_2027_RC	51	34	53	42	32	40	39	45	34	52
CACAAGTTGTATTCTC	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GTCGTATACTGAACAG	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTTTCGGCACCT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TATGAATATCCAGACC	alt_2027_RC	75	31	80	57	44	55	45	53	36	55
TGGGTTGATTTAGCGA	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GCACCCGTGGTAACTG	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TCCCTGAAGATACCAT	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
TGGAGGTCGATCGGTA	alt_2027_RC	235	101	254	243	95	204	121	204	137	185
CCTGAATCTACCAAGA	alt_2027_RC	15	19	16	21	16	23	20	19	17	20
GGGCTCCGCTTGGGGG	alt_2027_RC	0	0	0	0	0	0	0	0	0	0
GCTCTGTGACAATTTC	ref_4684_RC	57	41	57	63	45	42	55	52	65	65
AAGTTGATGTTAGATC	ref_4684_RC	13	10	10	9	15	11	21	4	6	10
ATGATAGGCCCAAATT	ref_4684_RC	29	42	37	22	36	35	34	37	30	37
CTTAGTTTCTGATGTG	ref_4684_RC	46	75	49	38	55	59	79	43	65	50
TTATTTGATTGTTAGT	ref_4684_RC	10	37	16	7	29	10	36	5	40	7
GATTTGATGTATTGTT	ref_4684_RC	26	23	28	28	30	28	22	27	52	21
CTTCATACTACCGACG	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TACACATGAAGCGGTG	ref_4684_RC	33	47	41	37	38	30	40	29	38	22
TGCTGGATAATCTCGC	ref_4684_RC	119	104	115	96	85	97	86	75	115	68
GATAATTAGATTTTCG	ref_4684_RC	28	40	38	30	35	24	35	39	36	29
ACTCTTGAGTCCACGG	ref_4684_RC	43	34	42	44	50	39	44	35	36	35
TACAACCTGATTGTAT	ref_4684_RC	8	17	11	11	12	5	16	6	8	3
ACAGTACGTAAATCGG	ref_4684_RC	29	38	29	40	59	24	56	35	60	37
ACGTGCCGGAAGCTAT	ref_4684_RC	14	12	12	10	18	4	15	8	10	10
AGTGTTCTTCGCTCTC	ref_4684_RC	19	18	14	19	7	17	13	10	14	14
AGGAGTGGGGTTATCG	ref_4684_RC	4	8	3	8	8	5	4	7	6	5
CTAATACCGCTTACAA	ref_4684_RC	34	53	33	28	34	30	32	35	33	33
TTCCGCTACTGCCCAC	ref_4684_RC	31	47	50	37	38	37	50	28	39	27
CTGAGGATATTAGAAA	ref_4684_RC	47	53	74	69	53	59	55	46	77	51
CCCCCGCGACATGGTT	ref_4684_RC	18	39	23	13	41	18	29	20	40	18
ACTTGGCAGAGAGTTG	ref_4684_RC	34	21	28	27	32	22	28	22	23	20
CCCACCGATTGATGTT	ref_4684_RC	71	99	74	54	122	49	108	60	115	53
AACCGACCCCCACTAG	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
AATGTTAGGGCGACGT	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGCCGGTGCTGT	ref_4684_RC	4	1	3	5	4	2	2	4	6	1
TTTACAAAATGTACGT	ref_4684_RC	74	79	113	97	83	82	97	59	73	66
AGGTGTGGCTTTAATT	ref_4684_RC	180	192	179	175	154	198	192	183	191	145
TGACACCTTGATCTTC	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TTGTTTACCCTCATAC	ref_4684_RC	28	31	36	30	26	22	25	27	37	24
GGATTCTCACCACGTG	ref_4684_RC	92	88	104	97	81	82	86	69	95	77
TTCAAGCTAACCCGGT	ref_4684_RC	100	75	113	101	90	96	90	83	90	88
TCTTTGTAGACGGTCA	ref_4684_RC	63	64	61	72	78	59	92	66	62	51
ACTAATTTTCACAAGG	ref_4684_RC	55	50	51	60	58	40	43	31	38	36
TTACGCTCCTCTTAAG	ref_4684_RC	47	49	41	34	38	37	74	38	74	42
TGGTAACTGATGCCCT	ref_4684_RC	1	7	2	1	0	2	3	0	5	1
CCTTTCTAGTTCCCCC	ref_4684_RC	99	121	114	77	99	88	102	74	116	92
CTCGAACGTTAGGACT	ref_4684_RC	19	21	34	27	28	31	28	13	22	24
TCTCAATGTCTAACCA	ref_4684_RC	86	72	78	57	69	66	75	55	74	67
TCACTGCGACATCTCT	ref_4684_RC	0	0	0	1	0	0	1	1	1	0
TTGTCACGGTAGAACG	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TGAAGGTTTTGACTGG	ref_4684_RC	245	236	243	258	268	253	239	194	299	173
TACGCTGTGACAGGAT	ref_4684_RC	27	13	24	19	15	16	12	22	21	20
ATGTCAGTCTGGAATT	ref_4684_RC	16	21	22	14	13	22	17	15	19	12
ATTCGGATCTCACTCG	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
CGTCTTGCTAAACGGA	ref_4684_RC	89	75	91	86	72	98	84	79	99	57
TAGTAGTCCCGACTCC	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TATCCGGTGGATTGGT	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
GGCACAGATGAGGATG	ref_4684_RC	18	24	18	19	19	12	23	10	20	14
TGTATTAAATCCCTTT	ref_4684_RC	41	46	56	59	45	32	52	25	50	30
TTAGCTATTTTCTATT	ref_4684_RC	23	35	35	20	36	38	45	30	29	21
TATAGTTCCTACGGTC	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TTATCATCAGCCGCAC	ref_4684_RC	13	27	16	28	26	16	20	14	17	16
TAGCAATTTCCTCGTC	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TATTCGATTCTTCAAT	ref_4684_RC	13	13	7	7	12	6	9	10	17	7
GGCCTTGTACAAACTC	ref_4684_RC	68	74	75	77	69	77	74	65	76	77
ACGTGCCGCCGAATTA	ref_4684_RC	9	41	25	20	31	24	31	16	26	10
GTCTTTGTGTAAAAGT	ref_4684_RC	33	25	25	26	39	19	41	25	40	17
CCTGATTTATGGCCGA	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TTCATGGGCTACTAGA	ref_4684_RC	45	52	52	72	45	33	72	48	45	62
GAGAGCGTGTCTCTGC	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
AATCCGGGTTTCAGCA	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
CTTCTCCGCTAGAGTA	ref_4684_RC	70	112	75	84	83	85	101	66	137	53
ATTGTGATCCCTGACC	ref_4684_RC	41	53	32	40	45	31	44	37	44	34
TTTTGATTCTTATCAA	ref_4684_RC	60	58	65	57	48	68	57	46	46	50
CCGTTTTGCTTTGTGG	ref_4684_RC	4	7	1	2	5	2	5	2	3	1
GTAGAATGGCACACGA	ref_4684_RC	55	49	64	73	51	49	45	44	63	47
TTCGATCAGATCCCGC	ref_4684_RC	97	128	151	116	116	102	114	117	145	125
GCGACATCTTAGACCC	ref_4684_RC	10	7	9	14	16	7	19	5	14	1
TCTTCGGCCGAATATC	ref_4684_RC	43	53	63	63	46	52	44	58	39	46
GTGCAGACTGTATTTG	ref_4684_RC	49	93	72	50	61	48	63	40	72	45
ACAATACCCTGGATTT	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
TGTGCCCGAGCCCCTT	ref_4684_RC	39	41	34	37	38	33	43	30	28	29
TTCACGACTCCAAGCG	ref_4684_RC	67	84	62	75	87	74	80	79	73	64
TTCCAGTTCCCTCTAG	ref_4684_RC	59	61	66	92	81	57	66	62	60	37
AAAAGAACTCTTGACC	ref_4684_RC	39	44	69	29	41	42	60	28	55	45
CTTCACATCACTTTCG	ref_4684_RC	179	193	200	192	193	160	191	171	256	158
CAACGCTCTTCGAACT	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
ATTGTTCAATCCCTAC	ref_4684_RC	0	0	0	0	0	0	0	0	0	0
GCTTTCGCTTTGGTCC	ref_4684_RC	28	48	54	43	33	30	39	40	38	29
ACTTCCCCCAGCGCAT	ref_5999_new	0	6	11	4	4	4	6	3	8	1
AGTTCCTCAGATTAGT	ref_5999_new	42	60	38	39	54	27	59	28	70	25
TGTTCCGGACTCTGTC	ref_5999_new	87	109	111	105	126	59	108	90	147	54
CTCGTGTGAGCGGTCC	ref_5999_new	15	29	17	18	40	16	33	17	37	17
TTTGGGCTATAAAGTA	ref_5999_new	0	0	0	0	0	0	0	0	0	0
ACTGCGTTCACAATTA	ref_5999_new	8	13	5	14	14	11	24	9	24	11
TTTCTCATGTACAGCG	alt_5999_new	61	117	77	36	113	55	128	78	103	59
GAGCACTCCTGTTTAA	ref_5999_new	6	10	4	7	4	4	3	2	6	3
GGTTGGACCGTGCATG	ref_5999_new	7	9	6	4	18	5	7	3	7	5
CGGGTGATCATGAGGT	ref_5999_new	25	22	31	16	21	22	23	22	28	23
CCTCTGTGGTCTGTCC	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GGTTCGTTTCTGAGAT	ref_5999_new	27	43	57	39	48	48	58	24	58	25
TATGGTAACGTGATTT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
TGTGATAACTTAGTCT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
AGGGCTGGTTTCACTC	ref_5999_new	5	1	1	0	2	4	1	0	2	0
GTTATGCGCGGTTCGT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
ATCGTCGGGTGCGTGT	ref_5999_new	12	18	16	6	20	13	20	4	16	7
TTTGCTACCCTTTGGA	ref_5999_new	1	3	2	3	3	0	0	3	4	3
CTGCCTAGCTTGAATC	ref_5999_new	2	12	11	9	11	6	8	4	11	2
ATGAGTTTGAGATCGG	ref_5999_new	7	9	10	9	7	9	11	6	13	5
ATATCCGTGTTGTAAC	ref_5999_new	27	42	30	25	28	18	29	20	44	28
GTCACTTATTGGGTTT	ref_5999_new	38	55	53	36	69	17	53	34	61	35
GTATCGTGGAAGGATA	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GCTCCGTCTGAAGATA	ref_5999_new	17	25	19	16	36	13	24	19	22	19
TAACGCATATTCGCTA	ref_5999_new	11	24	23	14	30	15	27	7	23	16
CTGACATCTCAGACGC	ref_5999_new	71	87	87	60	95	72	78	60	83	73
CTTGATGATGAATAAT	ref_5999_new	74	74	75	59	85	57	91	48	104	73
GTTGTCCGGCCGGGAC	ref_5999_new	13	39	31	27	35	18	37	23	38	17
TTGGTGTGTGCTTAGG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
CCTAATCGCTGGTTGC	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GAACTATCTTGCGTAA	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GATACGGCTAATACGC	ref_5999_new	3	2	2	3	3	4	7	0	4	2
TTCATATTGGAAACAT	ref_5999_new	5	13	9	11	6	5	13	7	13	9
AAATCGGGCATAGCTC	ref_5999_new	36	39	36	35	43	25	49	23	50	29
AGGTTGTATACGTACA	ref_5999_new	3	5	2	1	4	2	2	2	3	1
AGTAGAGCGCACTTTT	ref_5999_new	2	6	6	1	2	8	5	2	4	2
ACAGACTCACATTACG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
AGGCGTGCCTCTATCT	ref_5999_new	13	14	27	17	25	18	29	15	21	18
TACTGTTTTTTGGCTG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GCCGCCTCTGTATATA	ref_5999_new	0	0	0	0	0	0	0	0	0	0
TGTCTTGTATAAACGA	ref_5999_new	1	1	0	1	0	0	1	0	1	0
CCGATCCCAGTGTCAG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
CCAGCTGAGATACTCG	ref_5999_new	52	78	80	47	108	47	90	64	96	51
GCTTTATTGCGCAGTC	ref_5999_new	0	0	0	0	0	0	0	0	0	0
TAGCCACTTGATTAAT	ref_5999_new	31	64	46	36	67	29	73	37	67	39
TGGAATTACGACCGGT	ref_5999_new	39	65	34	33	74	45	82	33	67	37
TCTATAGAATTGTTGC	ref_5999_new	19	39	28	25	43	26	35	22	34	20
GTTACTTGCTCCGCCT	ref_5999_new	58	100	77	76	107	55	99	74	95	67
CGCCTACGGCGTACTT	ref_5999_new	2	28	17	10	31	13	8	12	29	8
GTTTGAATTTATCCTG	ref_5999_new	8	6	10	4	13	5	12	9	7	7
CAGTTCCGTGTATTGT	ref_5999_new	2	3	0	0	5	2	6	2	4	3
TAGTCGTGAAGGTGTT	alt_5999_new	11	10	11	9	8	9	18	4	12	4
GTCGGCATCGTCTCAT	ref_5999_new	1	12	3	6	9	5	6	5	2	2
TCCTGTGCCAGCTGAT	ref_5999_new	65	91	65	65	77	67	84	56	108	71
CTGTTAGCTCAGGCTG	ref_5999_new	9	16	12	8	16	9	24	11	24	11
TGTGAAGTCCGATTTC	ref_5999_new	0	0	0	0	0	0	0	0	0	0
ATCGTTCGGTTTGGTC	ref_5999_new	5	9	7	4	6	5	11	4	5	10
TCTGTCTAGCAGCATC	ref_5999_new	48	58	62	35	77	36	84	36	78	45
TCGATGTGGATCGTTA	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GTCCCCTATCTATTTA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GAGTTTGCAGCCTGAG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
AATCTTGGTGCTGCGT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GACCCCCAAATTGAAT	ref_5999_new	14	18	26	17	27	18	29	15	16	13
TAAAGTCCAGACTACT	ref_5999_new	15	12	11	10	24	13	18	7	18	8
ATTAGGCGCATTTCTA	ref_5999_new	0	2	0	1	2	0	1	1	1	1
GAATGGCAACGATCAA	ref_5999_new	4	9	13	5	11	10	13	5	10	6
AACAGTGCGTGTTATT	ref_5999_new	2	7	5	4	1	4	3	6	11	1
TGGTCAGCCACGCAAC	ref_5999_new	7	7	4	5	7	4	10	3	13	5
CATTCCCGCTCTGCTC	ref_5999_new	17	19	21	13	19	13	26	13	29	12
TGAAAACTCAAGTTCG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GGTTTGACTTACAGAT	alt_5999_new	11	15	10	14	13	10	15	12	15	15
CCGGCTTGTGGGTGGG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GACAATTCACCGGCTC	ref_5999_new	0	0	0	0	0	0	0	0	0	0
ATGGCTACGTGCGTAG	ref_5999_new	27	26	18	13	13	16	24	19	20	12
AGTCTCAAGGCTTATG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
AATTTGTTAATATCAA	ref_5999_new	34	34	32	26	38	37	33	21	40	21
CTCAATAGGTATAGAG	ref_5999_new	39	74	63	55	79	50	89	52	68	44
CTTGTCCAATACTCGG	ref_5999_new	3	5	6	7	13	9	12	3	22	7
CTCGATTAGAAATCTG	ref_5999_new	21	26	26	17	35	21	49	20	32	28
TGCAAGGGTCAGACAT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
TTTGACCACTGTCTCG	ref_5999_new	36	57	47	39	67	37	59	24	62	38
AAATGTTAAAGCCACT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
AGATTGACCTTTCACC	ref_5999_new	25	22	26	25	21	22	31	26	29	20
GGCCTCCATATATTGC	ref_5999_new	20	23	20	26	29	15	44	10	30	15
CTATCTCTTAAGTAGG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GATTATAACTGTTTTT	alt_5999_new	83	102	113	93	96	65	78	83	98	84
TCTATCTGCCGGAACC	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GACGCCCGACTCAGAT	ref_5999_new	10	17	19	11	30	16	16	12	20	4
TGCGACCGTTGAAAGC	ref_5999_new	11	21	10	19	10	8	18	11	10	11
CAGCAGGTTTTGTAGA	ref_5999_new	3	5	6	6	7	3	8	1	10	3
TATTTGACGTATGAAG	ref_5999_new	43	67	68	48	107	44	101	42	74	57
TTGCCAAGATTTGTGC	ref_5999_new	10	21	16	13	27	21	21	13	37	9
ACGGTAGCGCCTCGTG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
TTAATGTAAGATTCGT	ref_5999_new	38	67	47	38	49	41	54	48	66	45
CAGTTCTAATAGTGCT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
AGCGAAATGTCGCAGC	ref_5999_new	25	14	14	7	21	12	18	13	26	22
TCGCGGATTAGCGCCC	ref_5999_new	15	23	17	17	28	7	25	12	19	12
TTTTCAGTAATTAAAT	ref_5999_new	27	25	23	21	24	16	33	15	28	16
AATGCTCCTTTCCCTA	ref_5999_new	161	176	183	190	183	157	208	128	206	124
TTTTCGAACTCGATAG	ref_5999_new	4	7	4	3	4	2	5	3	5	2
GAAGGTTAATGTTCAT	ref_5999_new	17	9	7	7	17	12	16	20	15	9
TTTCGTGCAACGTGCG	ref_5999_new	10	17	11	5	8	8	14	7	21	14
CGAAAGTCTGTATGGC	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GTCATGAATTGTGACA	ref_5999_new	0	0	0	0	0	0	0	0	0	0
CTCGGCAGGTTTGCCG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
TTTGGTGAAAATCTAT	ref_5999_new	0	0	0	0	0	0	0	0	0	0
GAGTCTGCTATCTTTG	ref_5999_new	24	25	36	22	29	20	42	24	51	14
TAGACTACGCCTGTGG	ref_5999_new	0	0	0	0	0	0	0	0	0	0
ACTGGTCCCACATCCT	ref_5959_new	5	15	8	7	9	8	6	6	12	6
TCCCGGGCGGTCGGGG	ref_5959_new	102	167	111	110	179	85	181	87	168	99
TTCGCCGTTACTAGGT	ref_5959_new	55	113	63	49	97	52	97	48	99	50
AATCCAGCCCCCTATC	ref_5959_new	8	23	21	13	19	14	21	11	32	12
GACATAACTGTAACTG	ref_5959_new	26	49	30	31	40	22	39	21	40	26
TCCTGCCACGGTACCC	ref_5959_new	0	0	0	0	0	0	0	0	0	0
AGTTCATTTATATAGT	ref_5959_new	4	3	7	2	6	5	9	4	7	3
TGACGACTCGGATTCA	ref_5959_new	8	13	6	6	13	10	32	9	16	6
CCATATGCCGGTCCTC	ref_5959_new	0	0	0	0	0	0	0	0	0	0
TTGATTCGGTTTGATA	ref_5959_new	27	43	30	24	53	24	44	35	44	8
CTGCGATTCCTGCATA	ref_5959_new	8	12	14	7	12	9	8	9	23	8
TCGTCGTTGCCGTAGT	ref_5959_new	71	105	117	78	113	67	108	61	151	73
GACGTCTAGCCCTAAG	ref_5959_new	208	300	209	167	318	166	330	176	389	166
CAATGAGGTCTGTACG	ref_5959_new	0	0	0	0	0	0	0	0	0	0
TTCGGTCGATGAGCTC	ref_5959_new	7	26	17	13	16	14	16	5	36	8
TGAATTTGTCTGCCCT	ref_5959_new	79	142	89	92	123	83	143	81	179	77
TACAATTTTTTCTGCC	ref_5959_new	0	0	0	0	0	0	0	0	0	0
CGGGCTTTTGTTACGC	ref_5959_new	7	19	20	7	16	10	13	6	25	9
GTCGGGACCGGAACTA	ref_5959_new	30	50	32	42	50	38	57	35	45	30
GGACTTCAAGTTGGCT	ref_5959_new	42	66	64	45	84	49	66	46	88	29
GTTGGTAATGCAGCCA	ref_5959_new	0	0	0	0	0	0	0	0	0	0
TTCCCAAATCGCAATT	ref_5959_new	29	51	37	26	40	32	56	26	51	27
ACTACTTATAGATCTC	ref_5959_new	115	191	148	118	182	109	226	100	171	87
CGCAGTTACTAAGCAA	ref_5959_new	12	21	8	4	22	5	17	4	14	5
TTCGGCGCAACTTCCG	ref_5959_new	0	0	0	0	0	0	0	0	0	0
CCTGTTCAGGTTCGGT	ref_5959_new	34	55	45	44	85	43	93	25	86	33
TCCATCCTCACTGCCG	ref_5959_new	23	70	44	29	88	30	88	29	110	18
TGATATTATGTGTCTT	ref_5959_new	8	8	9	8	11	3	12	6	9	6
GCAGGTTTTTTTAACC	ref_5959_new	39	59	36	31	58	46	52	25	45	28
TTATGCGGTCTCATTT	ref_5959_new	0	0	0	0	0	0	0	0	0	0
TGTTAAACCAGCGTAA	ref_5959_new	36	51	37	36	49	33	58	35	61	25
GTTCGGAGCAAGTTCC	ref_5959_new	44	57	40	32	55	45	77	41	69	26
CCGAGCATTTTTATCA	ref_5959_new	101	163	119	84	130	101	164	76	155	86
GCCATGCGTGATGCGG	ref_5959_new	8	4	1	2	9	5	12	4	12	2
TTCTGTGGTCTCTGTG	ref_5959_new	19	41	27	27	59	33	54	27	44	16
ATTTGTGGGCGATGAC	ref_5959_new	0	0	0	0	0	0	0	0	0	0
CCGTTACGACAATTTT	ref_5959_new	2	5	1	5	2	1	4	2	2	1
TTTTCTTATGCAACCC	ref_5959_new	39	40	22	30	35	28	47	27	38	24
TTCTTAGATACTCCAG	ref_5959_new	7	18	3	6	22	10	23	8	16	5
CGGTATTAACTTTTAG	ref_5959_new	0	0	0	0	0	0	0	0	0	0
GTTGCACCTTAGTCTT	ref_5959_new	0	0	0	0	0	0	0	0	0	0
CAGGGCAGGGATACTG	ref_5959_new	21	32	19	27	35	12	38	17	41	19
TAATTGAACAGGTGAC	ref_5959_new	24	49	18	20	42	30	52	21	39	28
GTGGAATTGGTGTTTC	ref_5959_new	0	0	0	0	0	0	0	0	0	0
CTATTCAGGCGGTCCT	ref_5959_new	22	34	30	17	35	24	38	12	44	20
ACAGGATGTTAACTGC	ref_5959_new	33	68	47	45	50	47	69	34	65	38
TAGCTTACTTGGTTAG	ref_5959_new	19	25	24	9	36	15	38	16	22	14
ATTGCCCCATGCAGGA	ref_5959_new	27	42	40	29	45	34	56	34	50	27
AGGTTGCCGGGTATTT	ref_5959_new	24	33	29	24	43	21	35	28	46	10
AGAACCCATGATCACC	ref_5959_new	52	94	61	75	87	62	96	66	89	77
TTTTGAAAGTCGCGAC	ref_5959_new	15	28	16	9	27	10	20	15	14	10
GTCTGTTCGTTTGTCA	ref_5959_new	3	11	3	1	2	1	1	2	3	3
GCACTATCGATAGTCT	ref_5959_new	74	98	88	82	147	81	139	72	121	73
GATAAATAGCCCATCA	ref_5959_new	8	10	7	12	10	3	14	5	17	5
CCCAGCGATTGTCTTA	ref_5959_new	80	178	70	83	199	72	205	64	207	54
ATACGGTCCAGAACCT	ref_5959_new	44	78	37	32	79	35	61	31	75	40
AAAGGCACGAGCCAAG	ref_5959_new	121	205	156	141	205	106	233	125	258	126
AATCCTTCTTTGGGAG	ref_5959_new	26	41	27	16	44	20	32	19	48	25
TCAATTGATCTGTGTC	ref_5959_new	38	72	40	31	64	22	52	36	74	40
GCCCTACGAAGCTCCG	ref_5959_new	0	0	0	0	0	0	0	0	0	0
GTATGTTGGAAAACGT	ref_5959_new	22	36	29	15	36	16	26	18	43	15
TACATCCTGAGAAAAA	ref_5959_new	0	0	0	0	0	0	0	0	0	0
ATCTTCATTGCAATCT	ref_5959_new	32	25	30	22	49	25	46	17	33	20
TGCATGTCGTTCGCCG	ref_5959_new	53	64	44	41	62	39	57	45	67	38
GGGTGGCCGCGTCTAT	ref_5959_new	26	37	33	24	50	27	34	24	55	18
CAGACAGGTTTGCTAC	ref_5959_new	2	9	6	2	3	3	7	6	16	8
CCGCGGTTCCTAGCAT	ref_5959_new	0	0	0	0	0	0	0	0	0	0
GACTGTATCTATCCTT	ref_5959_new	12	43	14	18	28	14	36	17	36	13
TGCCACGGATGCTTGC	alt_5959_new	12	39	14	20	43	20	43	13	33	17
TGCTTAGAGGATAGCG	ref_5959_new	0	0	0	0	0	0	0	0	0	0
CCCGCTATTTGGGTTC	ref_5959_new	33	64	45	27	54	33	55	35	47	32
ATGATCCAGTATTATC	ref_5959_new	0	0	0	0	0	0	0	0	0	0
TAAATGCCTTGGACGC	alt_5718_new	240	370	367	332	388	304	377	285	416	260
GAGCACACAGTGAGGT	alt_5718_new	30	51	66	44	64	32	56	30	53	26
TATCAGCCCGAATTGT	alt_5718_new	3	14	7	16	11	9	11	7	16	10
TCGTGATTTGGTTGGG	alt_5718_new	17	25	15	15	18	18	17	13	17	20
GAGTGGCAATTTATTG	alt_5718_new	0	1	0	0	2	0	1	1	2	0
TCCTCTTGAGTAGGTT	alt_5718_new	20	32	19	12	16	11	25	12	27	22
AGTGGAAATTTTTGTG	alt_5718_new	122	128	151	121	129	96	137	93	143	112
CCCCTTTGAAATCAGA	alt_5718_new	65	99	69	86	116	80	92	62	130	70
GCGTTGGTTTTGTACG	alt_5718_new	49	49	58	43	46	36	53	30	45	28
CGAAGTTGGGACATCA	alt_2112_reverse	37	37	39	36	26	40	34	33	47	38
AGGTTTCCGGTTACTT	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
GTTGGTGGGACCGTTT	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
GGACCATTTCCCGCGT	alt_2112_reverse	43	21	44	28	36	21	24	18	30	35
GGAGCACCAGTGAGCT	alt_2112_reverse	92	107	134	115	97	114	115	103	109	91
CAGGGGGGTCACGTTT	alt_2112_reverse	66	29	100	68	44	67	42	66	41	70
TTGATCGTCGGGTCCT	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCGATAATTTCAC	alt_2112_reverse	40	27	41	30	31	30	35	15	35	34
AATATCTTTCGATACT	alt_2112_reverse	27	55	57	41	52	34	36	53	34	44
CTCATGTTTACCGACC	alt_2112_reverse	10	15	12	9	23	12	22	5	15	6
GGCAGTTGAGTACCTG	alt_2112_reverse	24	22	25	24	27	15	21	27	28	15
CCCTAGGTCAGCTGCT	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
GATGGGCCGGCTGGAG	alt_2112_reverse	85	64	101	105	82	85	75	111	77	89
GCTCTATTACCTCCTC	alt_2112_reverse	4	10	10	9	11	7	10	9	7	9
GTCATGTTTACTAATT	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAGCAGGTATGTA	alt_2112_reverse	78	54	122	97	67	67	50	86	84	81
CGCCGGTATCACCCAC	alt_2112_reverse	37	32	30	45	53	34	32	26	39	26
ACGACGCTTCCCGAAC	alt_2112_reverse	24	121	47	42	124	36	129	35	118	31
GCGTATCATCTATAAC	alt_2112_reverse	17	17	29	16	10	20	25	15	15	12
CACTCCGGCCACATCT	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
GATTGGCGAACCGTGA	alt_2112_reverse	27	15	34	25	27	25	24	14	16	17
ATGATCTGCCTCCGAC	alt_2112_reverse	137	107	187	156	149	158	125	152	145	132
CAGTTCACAAATTGTC	alt_2112_reverse	21	8	16	15	14	20	10	7	10	5
CCATAACTGTCGTTGT	alt_2112_reverse	545	402	642	556	439	514	500	489	499	480
CGTAACTGTTCGCACA	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
ATGATCTGCCTCCGCC	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTCCGTAGTATTG	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
TACGTTTAAACTTGTG	alt_2112_reverse	43	35	71	56	50	41	47	45	65	31
TTTTCACCCCTATTCA	alt_2112_reverse	177	160	250	205	183	175	180	165	198	154
TTAAGTTACCTCCATC	alt_2112_reverse	46	33	58	59	49	40	49	45	49	38
TCCGGGAACATCTGAC	alt_2112_reverse	31	29	46	43	23	22	25	37	31	29
AAATTGCGTATTCTCA	alt_2112_reverse	43	38	49	33	18	27	21	36	29	22
AACGGAGACTGTGTTT	alt_2112_reverse	103	113	124	112	104	111	133	97	108	100
AATGGGTTATTTACAT	alt_2112_reverse	94	80	96	94	78	94	62	73	76	76
CTTTCTGTGGTCAAGC	alt_2112_reverse	34	56	48	41	69	47	42	34	66	50
AATGATTATATACCTG	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
TGTCATTATAAACCTT	alt_2112_reverse	41	35	55	31	32	23	33	35	29	39
CCCAGCGTCTGTGCGG	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
GCAACTAATTCAGCCG	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGTAAATTCCTCA	alt_2112_reverse	20	19	32	19	17	18	25	18	30	20
ATCATGCATCATCGTG	alt_2112_reverse	7	17	11	14	9	5	17	12	10	12
TTTGTCCCGTCAGTCT	alt_2112_reverse	119	126	108	119	124	116	133	105	117	88
AAAAACGATTTGTACG	alt_2112_reverse	22	28	26	34	22	28	32	30	34	27
TCTAATTAGGGGGGAA	alt_2112_reverse	85	85	90	93	64	75	105	98	83	88
TATTTTTCTATTATCA	alt_2112_reverse	58	59	65	66	52	49	56	43	66	48
AAAGTCGTTGCTTGTT	alt_2112_reverse	0	0	0	0	0	0	0	0	0	0
CACTGGTAATTCTGGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CATTACGCATACGAAG	alt_5878_new	24	44	39	17	41	22	43	16	39	27
TTTATCAAGGTTCTTC	alt_5878_new	80	84	99	52	67	77	88	64	81	62
GTGCCATTTTCTGCTC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CTTTGGCACCCTTCCC	alt_5878_new	20	26	30	26	30	28	25	33	27	18
TTCGCCTGTTTGCTAG	alt_5878_new	15	43	22	20	49	18	40	30	42	11
TGACTCATGCTGCAAT	alt_5878_new	28	41	27	37	23	17	28	18	20	28
GCGGACGACCAGGGCC	alt_5878_new	9	6	6	3	5	10	6	7	6	5
TTAACCGTCCCCACTA	alt_5878_new	37	70	61	38	76	43	83	44	86	20
CCTCTTGGTTGCATAG	alt_5878_new	23	40	41	22	36	29	47	34	53	17
GTCCCATGCCATTCTG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTGCATTTCTTGCTCG	alt_5878_new	7	8	1	7	5	3	9	3	12	3
CTATCTCTCGAAAATA	alt_5878_new	45	83	57	53	76	50	80	48	71	36
GTGCTATTTGCAATTT	alt_5878_new	53	58	51	36	60	39	60	40	86	47
CGATGCCAGTCTACTA	alt_5878_new	36	60	44	37	45	32	49	45	59	28
TCGGGTGGCTCTCGGA	alt_5878_new	31	43	41	52	45	28	35	35	50	26
CACTTTCCGGAGACCG	alt_5878_new	7	10	8	7	5	14	9	1	7	7
GTACATGCACCCGACC	alt_5878_new	14	20	28	16	32	15	30	14	21	10
TTTGCTAGAAGTCCTT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTATTCTTCATTTCTG	alt_5878_new	59	85	69	62	60	60	69	49	91	45
TCGTTTCCATACGTCG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TATGTGGTGACCGTGG	alt_5878_new	172	193	208	186	250	166	228	155	240	171
TTGGAGCGTGAACCCT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TTGACATTGTTCCTTT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTCCTCAGCAAACTCA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GAAATCTTTGCTTATT	alt_5878_new	53	68	56	51	60	59	66	64	57	49
AGGTACCAACTGGGAC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CAATATTGGTCTAAGT	alt_5878_new	40	54	43	55	54	35	73	35	49	49
CGTGGCCCAATAGTGT	alt_5878_new	33	34	27	26	31	27	38	16	37	19
TCATCTTCTATGGTGT	alt_5878_new	1	1	0	1	1	0	2	2	1	0
GGCTTGTCTGTCTTTT	alt_5878_new	29	52	24	34	39	23	42	29	35	17
TTGTACAGATACATCC	alt_5878_new	58	77	85	57	76	63	83	56	66	70
GCAACGTACTGCACGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGTATCTTGCATTTGG	alt_5878_new	33	63	56	42	46	50	51	47	74	35
CTTTTACGCCACGCTT	alt_5878_new	11	9	6	6	6	4	7	5	6	5
TTAAATAGGCCGGTTA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TAAACACGTTTCTCAA	alt_5878_new	23	24	36	26	23	27	31	18	25	22
GTAAACACTTTCAGGG	alt_5878_new	2	5	4	4	3	3	7	2	2	6
CACGTTTGAAAGGATG	alt_5878_new	15	18	26	13	20	10	22	18	33	25
TAGGCTACCTGGTCTC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TCGAAGCAGTACAATC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GCCCACGATGGACGGA	alt_5878_new	10	11	8	6	14	2	5	4	17	9
TGAAGTTGGATCTGTT	alt_5878_new	26	33	43	22	41	34	36	31	39	29
GTTGTAGGCTGAAGTC	alt_5878_new	36	54	49	42	41	45	49	35	52	47
CATTAGAAAAGCACTA	alt_5878_new	7	25	16	7	15	12	14	7	17	7
GTGACATCCAGGACAC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CGTTGTGAGACTACCG	alt_5878_new	4	20	14	8	8	10	15	13	21	6
AGATTTGTAATTTATC	alt_5878_new	25	20	22	11	22	14	13	16	20	19
TTGGCGAAATTAAGTT	alt_5878_new	7	11	11	10	11	8	14	9	8	12
GTATCTGCCGTCCAGC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GATTTTTCGGTTGGAA	alt_5878_new	6	15	18	8	14	18	21	18	7	14
GTATTCTCTCACAGGG	alt_5878_new	45	53	57	46	33	37	42	49	68	23
CCCATTTTTATGTAAC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTACTGACGCCGCCTC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GAGCTATGGAGCGTGC	alt_5878_new	53	59	43	50	56	43	43	55	55	56
CGTGTTTTTTGTGAAT	alt_5878_new	9	11	12	16	10	10	11	8	9	5
CCGTTATGGTATTCGT	alt_5878_new	11	23	21	20	25	14	30	21	24	14
GCCTTTCATTTTTGCA	alt_5878_new	5	4	0	4	5	4	8	3	1	3
TTGATCTCAGTTTGTT	alt_5878_new	16	4	11	14	16	12	11	11	9	8
GCTGACCGTAATCCGG	alt_5878_new	24	44	34	27	26	35	31	27	31	21
CAACTTCGCTCGGTCA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TGCTCGGTCTGGCGTA	alt_5878_new	17	24	24	42	23	12	26	18	20	15
TTCTGTCTTACCTTGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
ATGCTTAACTTGGCAA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TATTCTGGTACCTTAG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGAACCAATACAAGAT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
ACATGGTATAGGTTCC	alt_5878_new	32	35	43	29	37	46	32	24	34	30
ACGCAAGGTGGGAGTA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TTACGCGGCCTCATCT	alt_5878_new	36	41	43	40	41	52	50	49	46	35
GTCGCTGTTCGTATAT	alt_5878_new	16	20	15	7	22	9	21	8	15	14
GAAGGCTAAGGCTGAT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CACGCAGCGTGTGTAA	alt_5878_new	6	18	10	6	10	7	21	9	19	4
CGAGAGAAGCTCCCCC	alt_5878_new	94	87	86	61	89	73	73	68	85	76
CCGTGTACTGTGGCTC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGGCGCGGAAGTAGAC	alt_5878_new	35	30	37	30	27	32	33	27	32	27
AGGGTTCACCGTAGAG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGAAGTAAGTC	alt_5878_new	10	10	8	9	4	4	6	7	8	9
GTCGCGAATACACCTA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TTGCTCTGCCTTTTCT	alt_5878_new	32	38	52	37	44	36	58	38	55	32
TTTTCAGAAGCTCTGT	alt_5878_new	28	29	33	19	26	25	29	14	25	14
TTGCAACTGGTGATCG	alt_5878_new	15	8	10	3	16	7	11	8	22	9
CTCACCGTGTTTGACA	alt_5878_new	32	43	42	26	53	24	47	24	59	29
CTTGCGTCGCCCTCCT	alt_5878_new	15	19	12	20	14	19	15	11	15	15
GGTTCCTTTCTTGCTC	alt_5878_new	1	0	1	9	3	1	3	3	0	0
AATTTTATTCTGTGAG	alt_5878_new	27	45	39	38	50	27	46	30	39	25
TTTCCCATATCTCTGA	alt_5878_new	17	13	11	18	6	9	18	10	10	7
CATACTATGCCGTACC	alt_5878_new	36	38	46	50	43	31	45	41	43	34
TTTTGGTCTGCACAAG	alt_5878_new	11	15	16	19	19	10	16	7	31	16
TACACCTCTAGAACAG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGACCAATAGCTATGA	alt_5878_new	8	6	7	4	9	9	11	6	4	6
TTCTTTCCAACGTCAG	alt_5878_new	35	27	40	35	36	27	37	31	40	29
TGCGCAATAAAGATAG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CAGGTTTGCTGTCAAA	alt_5878_new	44	48	40	39	48	41	41	29	57	26
TTCCGTCTGAGCAATT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TCGTTCCCGAATACCC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TCCCAGCAAAGTGTTC	alt_5878_new	56	76	47	50	72	50	74	47	70	45
ACCTGATGCATTGCTC	alt_5878_new	0	1	3	1	2	3	3	0	1	2
CTACATGGCTTAATAC	alt_5878_new	9	5	6	9	9	6	12	7	8	11
TAGCTCCACAATAGTC	alt_5878_new	38	54	44	27	63	37	52	41	44	35
CTATGATGCCATAGTA	alt_5878_new	14	9	14	15	22	19	16	13	15	7
TTTAATCGTTGATAGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
AACGCTGTCGGTTAAA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CCGCTGTTATATTCAA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CGTTGCATGCGTTGCG	alt_5878_new	24	36	49	21	48	23	40	15	48	32
CTGTCGTCTTTACTTT	alt_5878_new	11	14	19	18	14	22	22	13	28	18
GCCTTGCTCGCATAGG	alt_5878_new	17	19	14	6	14	7	23	18	25	11
AGTAGATGGCATTATC	alt_5878_new	6	10	8	6	4	6	10	2	11	2
TACAGTGAGAGGTATT	alt_5878_new	124	217	190	170	229	134	207	134	235	132
TCCGATCAGTACAGGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
ATACGTCGTGCAAACT	alt_5878_new	88	141	119	105	135	92	122	98	148	80
CAGCTTTCTCGATTGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGACCCCTTGTGCTTT	alt_5878_new	28	49	34	40	46	23	46	33	48	28
CTAGGTATGCACTACG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TGCGTAGGCAATCTGT	alt_5878_new	8	8	15	7	11	7	7	9	11	3
TCTGCTTCTGCTCAGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TTATGCTATGGGTGTT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TTTCAGCACCAGTGTC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
AATGAACATCGCCACG	alt_5878_new	13	8	7	5	10	9	13	4	14	16
CTAAGCTGATTTTGGT	alt_5878_new	9	15	13	20	20	9	13	13	18	7
TATCGTTCCGGAACGA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGGGATGCGACAACTA	alt_5878_new	17	21	17	23	12	4	14	9	10	5
TGTCGGATCGTACGGT	alt_5878_new	27	27	17	26	14	19	35	25	28	13
AAAAATGCGCGCTTGG	alt_5878_new	32	31	34	36	30	23	39	31	36	38
GTACCCTTATACCGTC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CTACTCAGGTGAAACT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
AACGCGAAATCATTGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGTTCTCACTACATTG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GCCGGAGGACTTAAAT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CATCCAGCAAGGGCGC	alt_5878_new	9	12	14	9	13	6	17	8	12	9
TTAAGCGATTACATGG	alt_5878_new	65	100	117	68	69	71	108	69	93	72
GGCATATGTACCGCCG	alt_5878_new	36	41	31	34	52	31	49	36	31	35
CTAATCCCCGTGTCGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
AAGTCCGTGGACGCCC	alt_5878_new	13	14	14	6	16	11	21	17	13	23
GTTGGGACATGCTAGT	alt_5878_new	42	49	53	30	54	36	33	28	45	46
AGCGTGGACTGGTTTG	alt_5878_new	52	69	76	58	56	42	88	59	61	36
TACCTAGGCCATTGCC	alt_5878_new	57	31	38	24	48	23	41	25	43	27
TTTTTTGGTGTAGAGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GGCATGGGCACGTGGC	alt_5878_new	29	28	35	22	25	21	29	33	18	15
CCCATCGCCTAGGCTT	alt_5878_new	5	2	9	5	7	0	4	4	6	0
CTTTATTAAAGGCTCT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTGACATCTTCGTCTG	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTCATTTGAAGGAACC	alt_5878_new	8	23	14	12	23	21	22	18	28	20
AATACTTCACTGCCTT	alt_5878_new	7	16	16	14	16	12	7	5	16	12
TGGTATGCCTGAACTT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
ATCCATATTAAGATCT	alt_5878_new	55	31	58	60	55	36	51	52	60	43
GGGACGCGAGTCGGTC	alt_5878_new	32	58	49	53	44	41	45	37	70	36
GATCTGGTGCATGTGA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
ACCAGCTACTGCTTAC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CGAGTGACTGAATACA	alt_5878_new	70	80	76	83	66	56	78	56	77	63
GAACTTTGAAACGTAA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TTCCTCCAAGGGAATA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTGTAAACACGGCCTT	alt_5878_new	116	128	153	147	163	134	154	122	165	128
CCAAGAGGGGAGGGCG	alt_5878_new	2	1	14	6	4	11	5	7	6	1
CTCCATTTTGATCACT	alt_5878_new	16	25	14	20	30	10	29	18	22	22
ATTGGGGTTAGTATCT	alt_5878_new	16	11	15	4	13	18	11	5	6	16
GTAATGCGTGCACATT	alt_5878_new	37	44	59	52	52	60	54	56	66	44
ATGTCTAACAGTGGGA	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CGTTCTCAGATTGTAT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
GTTGCTCTTTGGGCAC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CCAGTCTACTCCACTT	alt_5878_new	15	16	7	12	27	6	24	15	12	10
AATGTCCGTCTAGAAT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TAATTCTCGATGCAAT	alt_5878_new	5	7	7	4	5	6	12	6	7	6
CGGTTCGGGCGCCCAC	alt_5878_new	7	14	20	7	12	6	20	10	17	14
GTGCTCGACGTATACA	alt_5878_new	9	14	14	8	16	10	17	6	24	11
TTCATATTTCATGTCT	alt_5878_new	9	4	8	11	16	4	7	7	13	5
CTCCCCCCATCGAGGC	alt_5878_new	8	11	11	8	16	10	21	6	28	7
TTGGTCCGTCATTAAG	alt_5878_new	20	30	31	40	33	24	39	33	48	21
CGGCGCTAGTACTGCT	alt_5878_new	3	0	6	3	2	4	4	3	3	4
CTCAATGGCCGTTGGT	alt_5878_new	0	0	0	0	0	0	0	0	0	0
CCCGAACCTACTACGC	alt_5878_new	0	0	0	0	0	0	0	0	0	0
TTCGGACCGTGGTGTC	alt_5878_new	47	44	54	36	60	39	41	35	44	38
TTGCTTTAGTTTCAGA	alt_5878_new	28	20	18	14	15	27	33	23	22	17
CATCCTACATATCATC	alt_5722_new	51	43	61	58	40	28	37	44	40	52
GGCTGTTGATTAGCCT	alt_5722_new	0	0	0	0	0	0	0	0	0	0
ATCCTCTTTAACATGT	alt_5722_new	12	10	18	9	7	10	5	16	11	11
CTTCGGCTCCACTCAG	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TGAAGTATTTTATTCG	alt_5722_new	5	2	6	5	6	1	5	8	6	3
GGCTCACCGAGGGTCT	alt_5722_new	13	12	19	16	17	16	15	9	11	17
GTCAGTAATTTGTGAG	alt_5722_new	9	17	12	10	13	10	9	6	16	11
CACCCTTTATTGTTTT	alt_5722_new	14	4	4	13	10	8	11	11	8	13
TTCAGTCTTTGTACTT	alt_5722_new	17	15	16	8	9	10	11	11	14	12
GGACGGCTCTGTGGGA	alt_5722_new	18	9	12	9	8	8	12	9	10	9
GTACATGAGCTAATCT	alt_5722_new	0	0	0	0	0	0	0	0	0	0
CTAGCGCTTTTTGTTT	alt_5722_new	18	20	35	22	41	29	25	30	20	25
TTGCCCGAGGCTTTAA	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TAACTCGAAGTTTACG	alt_5722_new	83	69	102	84	64	77	74	74	78	62
GGTCCGGAATGCAATG	alt_5722_new	41	39	41	31	40	55	31	49	35	40
TCCAGGGGATATATGC	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TCTGATCATAATTTAT	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TCAGTTTTTCTATCTT	alt_5722_new	8	7	17	8	6	6	11	7	9	5
CATATTTTCCGCGCTT	alt_5722_new	7	14	14	19	6	11	8	12	9	5
CTTCTAATTGTTGTCT	alt_5722_new	18	32	25	30	28	14	29	24	31	22
AATCTGAGAGATCGAG	alt_5722_new	94	68	77	89	70	87	66	78	67	66
CAGCTGTTGTGCTAAC	alt_5722_new	0	0	0	0	0	0	0	0	0	0
GTGTACCCGGGTTAGA	alt_5722_new	23	19	13	23	22	19	14	14	9	14
CAATGTTTTTATCAAC	alt_5722_new	5	3	2	4	3	4	3	2	1	3
TGTTTATTTGAAAAGG	alt_5722_new	0	0	0	0	0	0	0	0	0	0
GAGTGTTGTCGAGTCT	alt_5722_new	19	27	30	25	26	23	28	17	18	25
ACATCATTGTTATTGA	alt_5722_new	40	40	48	41	33	34	38	43	31	33
AACTGTTCAACTACTC	alt_5722_new	13	13	16	20	17	13	19	10	18	6
ACATATTTCCGAGTAA	alt_5722_new	0	0	0	0	0	0	0	0	0	0
ACAGAGCTAAATTGCG	alt_5722_new	48	32	64	61	35	55	38	49	54	43
TTTTAACGTGCTCCTC	alt_5722_new	5	6	17	19	10	8	2	11	9	8
TATACGCCTCTTCTAC	alt_5722_new	9	11	22	23	13	17	16	10	18	14
ACACTCATAGAGGAGC	alt_5722_new	0	0	0	0	0	0	0	0	0	0
AAGGAACCTTCTGGAT	alt_5722_new	1	6	7	4	6	2	5	7	5	0
CATGGGGCCCGTGCGC	alt_5722_new	9	2	5	3	10	4	7	9	3	3
TGGCTCCTGGACCTTC	alt_5722_new	0	0	0	0	0	0	0	0	0	0
GCCTTGTACCGTTCCG	alt_5722_new	58	65	58	52	62	65	41	42	49	45
ACAAATCACGGCCCCT	alt_5722_new	26	20	40	32	24	22	14	33	26	20
TCATTCAGCTCCTTCG	alt_5722_new	0	0	0	0	0	1	0	0	0	0
GTTCATCTATATTTTT	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TCCGGTTTGTGTTAAG	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TACACGGTGACCAAGG	alt_5722_new	42	29	38	43	43	41	33	42	30	47
CGGTTGCTTAATCATC	alt_5722_new	36	33	62	47	36	42	31	41	32	43
ACCCGTAAGGCTTCGC	alt_5722_new	1	9	3	2	0	2	10	4	4	4
CATGGACAACGTATTC	alt_5722_new	40	16	47	54	25	41	50	37	24	29
GTTAAGGCATAGTGCA	alt_5722_new	23	24	22	19	13	22	22	21	16	21
TTTCGCGATTGCGTGT	alt_5722_new	15	23	26	15	20	14	7	13	6	11
GAGTGTTTTTCAAGGT	alt_5722_new	0	0	0	0	0	0	0	0	0	0
GTCAATCAAATCTAAA	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TAAATATCTCCACTTC	alt_5722_new	25	10	23	27	18	11	13	16	21	14
TCGTGCTCACTTAGTG	alt_5722_new	13	27	25	23	25	17	24	25	38	20
CATTACGAAGGTTATG	alt_5722_new	0	0	0	0	0	0	0	0	0	0
TTTGGATAGCTTGCCC	alt_5722_new	16	10	9	14	17	6	8	14	12	9
CGTCAGCTCACATTCC	alt_5722_new	15	12	24	18	12	16	23	13	13	18
CATTCCTAAACCTCTA	alt_5722_new	11	25	17	17	12	21	15	17	3	14
TAAACTGGTCCCCTGC	alt_5722_new	16	12	11	22	16	17	5	20	17	11
CCCCGCCGTCTTACCA	alt_5722_new	2	7	2	2	6	1	7	4	11	2
AATCTCGACTTGCCTG	alt_5722_new	0	0	0	0	0	0	0	0	0	0
GTACCGTGGGGGCTCT	alt_5722_new	0	0	0	0	0	0	0	0	0	0
GTTCAACTTTTATTAG	alt_5722_new	0	0	0	0	0	0	0	0	0	0
GTAATTTGCCATACGA	alt_5722_new	8	14	23	12	20	7	17	16	10	11
TCATGGTCTCTCATTC	alt_5722_new	32	26	40	42	17	33	22	21	23	24
GAACAGCATGCAAGGT	alt_5722_new	80	58	78	91	56	74	74	79	67	88
CTTTCCATACACATCC	alt_5722_new	67	81	83	66	87	48	99	61	69	46
CGAGCAGCGTACGGTG	alt_5722_new	27	27	44	31	35	30	26	43	25	31
CAGCGGATTGATCTGG	alt_5722_new	5	0	6	4	6	5	2	6	9	4
ACTGGCCACAAACCTG	alt_5722_new	53	39	60	74	50	54	35	57	68	40
CAGATCTTCCTCGAGG	alt_5722_new	2	5	7	9	4	7	2	13	3	1
GTCGTTTCTGTTCTCT	alt_5722_new	58	55	65	76	45	75	45	60	51	63
TCAGGGCGCGTTTTTG	alt_5722_new	61	36	63	58	43	47	43	41	34	32
AGCCTCTCCTCTCGTG	alt_5722_new	34	46	54	41	39	31	43	41	39	37
TGCTTTCCCGGCAATC	alt_5722_new	51	64	63	48	57	45	59	51	56	44
CGCACCATTGTCAGTA	alt_5722_new	21	25	25	27	29	27	32	36	32	18
CACCCAGGCACTCTTT	alt_5722_new	5	9	5	4	9	4	4	4	6	3
TTTCTTAGCGCGTACC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CCTCCAGCTCATTTCA	ref_5860_new	5	17	13	12	20	5	28	10	34	6
TTATTTGAACGGATCC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TGTCTCGGCGTTAGGA	ref_5860_new	80	61	73	67	56	59	69	61	66	57
TGCAAGGAAACCATGC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
ACTGGTCTTCTTGACA	ref_5860_new	10	12	17	13	38	12	21	12	17	9
TTTGGAAGTCAATCCG	ref_5860_new	0	0	0	0	0	0	0	0	0	0
AACTGTGGCTCGAAAT	ref_5860_new	50	63	62	54	48	52	54	43	49	36
TTCAGATGTTCGCATA	ref_5860_new	16	27	19	19	14	11	23	18	19	18
CGCCGCCATGGCTGTG	ref_5860_new	19	19	31	21	15	19	17	28	20	15
CGAACCTCCCTGCAGG	ref_5860_new	69	86	77	81	103	62	96	53	73	50
CGAGCTTCCGCGTCCC	ref_5860_new	24	35	24	18	20	29	32	21	26	16
CAGGTAACTCAGGTAA	ref_5860_new	31	28	33	39	36	28	26	19	34	31
CTCCTTGGCGCGTAGA	ref_5860_new	20	21	33	18	19	12	28	18	14	28
CTCCTCTGACGTTATA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
GCGATAGACTCTCTCG	ref_5860_new	17	10	5	15	13	4	18	8	9	7
GGGGTACATATTAGCG	ref_5860_new	28	51	55	35	43	56	48	42	33	35
ATTCTTTCATTATATT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TGGAGATATCGTTGCT	ref_5860_new	16	14	26	19	28	20	27	30	31	15
CCATATTGATCATTCG	ref_5860_new	208	248	294	204	275	186	260	220	295	211
TTTGATCGGTTTACTT	ref_5860_new	104	121	150	115	124	108	96	110	114	108
TCCAACAAAGCACGGG	ref_5860_new	50	48	61	52	39	38	46	47	54	52
TCAACGAATTGGGGAC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TTCATATACAATACCT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TTTCTCGTTCATGTCT	ref_5860_new	90	86	97	82	79	78	83	79	75	51
TGTCGAGTCATGATTT	ref_5860_new	0	0	0	0	1	0	3	2	0	0
AATGCCCTTAATTTTG	ref_5860_new	80	78	128	74	85	81	97	75	72	81
GGTGCGTAATACCTGC	ref_5860_new	30	56	20	46	43	40	46	28	36	26
CTCTTATCACTGTTGG	ref_5860_new	10	8	15	10	10	8	7	15	18	9
TGTACCCTTTCTCGCC	ref_5860_new	85	76	73	82	94	67	98	51	80	59
GCGGTTTATTGGATTT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TGTTTAGGCAGATATC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TTCATCTATATCTACA	ref_5860_new	52	47	76	66	47	58	61	50	57	44
CGCGCCAAGTTATCCG	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TTTACAGGCTCGGCTA	ref_5860_new	2	4	3	3	2	3	8	3	5	2
ACGTACGTGCTTCTCT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CTGGTAGGTGTGGGGA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CTTTCGGGTTTTTCAT	ref_5860_new	17	8	17	17	13	11	12	5	14	8
CACTTAGACCATCTGG	ref_5860_new	18	20	11	15	21	12	19	21	20	11
GTGTCCCACCTCTGGA	ref_5860_new	5	10	9	15	12	7	10	9	15	7
GTTTGAGTTTCTCATA	ref_5860_new	17	13	19	9	30	12	12	13	14	12
CGTGCAACAGCAACCT	ref_5860_new	6	7	8	3	12	5	1	4	7	7
AAAATTATTGCTTCGC	ref_5860_new	11	8	15	8	10	12	11	13	18	15
TTTTTTTTCCCCCGCC	ref_5860_new	137	140	150	109	152	110	147	103	154	91
TTCGCTCTAGCGTTAT	ref_5860_new	11	5	17	15	7	9	12	7	15	10
ACGGCGATTGCTCTGT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
AGTTTTTTGTCGCGGT	ref_5860_new	12	23	20	9	20	15	20	20	23	15
CTCAGCGGGATTTTAG	ref_5860_new	22	26	30	14	17	24	29	10	33	14
ATGTCTAGTACGATAA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
GATCCCTGAGACTGCT	ref_5860_new	13	14	16	12	12	5	19	14	8	11
ATACTTAGTAGTACCA	ref_5860_new	8	11	16	18	11	9	13	7	21	8
AGTGTATCTTCGTGGA	ref_5860_new	3	6	5	5	3	3	9	6	2	3
ATCGTCGCGCTCTAGT	ref_5860_new	117	125	160	135	157	113	163	104	139	110
TGTCGTACTGTCATTG	ref_5860_new	12	34	30	12	37	15	48	11	45	22
CAATTCCCGTGCCATT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
ACTTTGCATGCCTAAC	ref_5860_new	44	40	56	45	34	31	33	37	50	42
GGCGCCAACGCTTACC	ref_5860_new	31	24	38	34	29	34	25	22	37	21
TATGCTGGGGTTCACT	ref_5860_new	14	12	19	15	10	11	16	10	11	12
TATTCGGGTACGTCGG	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CCTCTGGTCCGGCTAC	ref_5860_new	48	45	46	28	45	24	43	26	35	41
TCCGTGTAAATAGGTT	ref_5860_new	30	36	36	35	30	32	40	9	51	20
GCCTCTACGTGCTATT	ref_5860_new	12	8	9	14	13	6	13	21	13	7
CTAAACTTTTTACTCC	ref_5860_new	14	13	20	8	5	10	6	9	9	5
AACTCATACGACGTAT	ref_5860_new	90	75	95	102	103	107	108	83	107	71
GGAGGTACTATGCGTC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TTTATGCCCATTTGGT	ref_5860_new	23	16	27	22	25	20	34	21	26	29
GGGCAGCCTGTAATCC	ref_5860_new	18	20	22	20	12	16	18	10	14	17
GTAGTCGTTCAGCCCA	ref_5860_new	10	12	13	13	13	16	17	16	12	6
CTCATCATAATCCACG	ref_5860_new	8	4	10	8	7	6	4	5	5	7
ATCTCATGCGCCTGAC	ref_5860_new	73	68	66	67	77	58	74	58	87	60
TGAATACCCCATCCGC	ref_5860_new	34	40	51	40	37	26	34	33	41	29
CGAACTTTGCCTAGTT	ref_5860_new	88	98	119	97	116	78	127	89	111	99
TAGCCCTAGCTCTTTC	ref_5860_new	9	20	14	13	22	6	20	8	8	11
GCTCGCGGATCGAACG	ref_5860_new	18	12	18	20	18	15	15	13	16	13
TATCGCATATTATGGA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CGCATGTTGCGACCAA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TTTCCGTTCGCTATTG	ref_5860_new	29	43	26	19	41	39	47	19	43	29
TTCACCCCGGTTTAGA	ref_5860_new	23	36	35	25	36	21	20	29	37	20
TGATTAAGCTTTTCCT	ref_5860_new	207	238	286	235	258	198	270	184	241	180
TATATCCCATAAAGCA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
ATATTTCGGTATTATC	ref_5860_new	16	17	41	26	26	18	28	28	19	14
TCTCTGTTATTGGGCT	ref_5860_new	15	14	18	15	21	17	19	11	22	14
CCTGAATATTTTAGCG	ref_5860_new	26	24	27	26	21	41	24	35	26	22
GCTGTGTCAGTTACCG	ref_5860_new	82	75	95	63	72	76	76	88	94	74
GGCTTGTGCTTGTGTT	ref_5860_new	7	18	6	12	8	8	18	6	12	9
TACTCCGCCAACGTTC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
ACTTTCAAAGATCGTC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
GATGAGAGTATAATAT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CGTGCTAGGCGTGCCG	ref_5860_new	17	28	21	21	10	10	17	15	24	16
TCCGCGTATTCTTAAG	ref_5860_new	0	0	0	0	0	0	0	0	0	0
ACATTTTCGGTTCTTG	ref_5860_new	156	185	213	149	189	147	174	153	215	127
ACGGCGATTGCTCACC	ref_5860_new	10	19	13	14	15	18	19	11	18	14
TGCTCAACTTATTCTC	ref_5860_new	24	15	27	19	35	20	17	25	22	16
TAGGTTCCACCCTGGT	ref_5860_new	14	13	9	17	15	13	11	12	17	8
CATAGGTACCGTTGGG	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TTATTGGGTCCACATT	ref_5860_new	4	6	6	5	3	1	4	7	6	3
CCGAAGTGTGTCTTTT	ref_5860_new	21	20	27	26	26	26	38	25	45	18
GGTAATTTTCATCGAC	ref_5860_new	137	107	152	149	142	134	134	137	104	149
TTTTCTCTTTGGACTC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CATTAGCATGCCTGCG	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CCAGAATATTTTAGCG	ref_5860_new	0	0	0	0	0	0	0	0	0	0
AATATGTCTGGTTGAG	ref_5860_new	84	94	118	97	100	72	94	87	95	72
TTGATTAAAGTGGATA	ref_5860_new	16	11	10	10	9	9	3	8	9	9
CCTAGCGTATCGTCTT	ref_5860_new	11	11	23	13	21	14	32	8	11	12
GATGGGCCTCTTGTCT	ref_5860_new	237	246	278	270	272	232	307	239	290	221
CTTCCCGTGCTTTTTT	ref_5860_new	6	10	6	7	15	13	4	9	12	10
CTTCCTTGAAAAGACC	ref_5860_new	22	24	27	26	15	2	21	6	16	13
TAATAAATCATTACTT	ref_5860_new	56	33	54	54	46	46	32	36	50	51
GGCCAGAGAACTAGAC	ref_5860_new	58	81	64	71	69	52	68	46	73	48
CTAAAGAGTATTTTTT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CAGATAGTCTTTAAGA	ref_5860_new	28	65	37	31	65	32	36	34	38	24
CGTGCTACGTGTGCAT	ref_5860_new	14	10	15	14	16	15	19	5	11	8
CGATAACTAGGCGTTC	ref_5860_new	21	34	30	13	37	30	42	37	38	17
GGGGATTCTGGTCTGT	ref_5860_new	3	0	1	0	0	5	2	1	3	0
ATGACAGGTAGCGTCC	ref_5860_new	19	13	22	16	10	12	14	19	24	13
ATACAGCATCGCAACG	ref_5860_new	83	102	123	114	122	87	101	108	93	69
CGCGATTAGATCATTC	ref_5860_new	39	41	53	39	30	37	47	41	63	28
GCCCCGTGTAGTTCTT	ref_5860_new	23	29	20	29	32	25	23	22	23	19
TAATCAGGGATACGCG	ref_5860_new	4	5	2	2	4	5	2	2	3	2
CTTACTTGTGCGATAG	ref_5860_new	46	68	46	60	88	52	57	45	96	44
CCCACGTACATGCTTC	ref_5860_new	17	20	30	32	23	17	30	16	18	17
CCTCTATTCAAATCCT	ref_5860_new	102	132	147	108	145	108	98	113	144	107
ACCACTTATTTTTAAG	ref_5860_new	4	4	0	3	2	3	4	7	0	1
TAGAGGCACTTGTAAC	ref_5860_new	15	35	30	19	30	14	24	17	35	22
TGTGCGGGCACTTGGA	ref_5860_new	121	104	141	121	105	124	105	138	136	90
GCTGCGTATGGCCATA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
TGACCGCTATAAGTTT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CCGCGGTTGTGTGCTG	ref_5860_new	8	18	18	10	15	8	23	7	29	9
CTGCGCACTGCCAGGC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
GGAAAGGTTCACGGAT	ref_5860_new	73	91	87	69	89	69	81	58	76	63
CCATTCTACTCATGAC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
GCATTAGAGGCTGGGT	ref_5860_new	6	3	8	6	10	5	6	6	5	6
CTTTTTCTCGTTTTCA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CAAAGTGCTAAGTGCT	ref_5860_new	23	29	23	22	42	24	34	19	35	20
GTACGGCAGTGTTTCT	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CAAGAGAGTCAGATCG	ref_5860_new	24	44	37	37	44	31	40	28	55	27
TGATTAAGAGGTTCGT	ref_5860_new	3	2	9	3	2	4	2	2	2	5
GCCCCGTGATGCCTCC	ref_5860_new	52	61	53	48	78	33	51	38	57	48
GATGTATCCGATCGGT	ref_5860_new	21	30	25	16	37	17	30	20	33	19
CTGCGTGGTATCATGC	ref_5860_new	51	50	83	63	42	61	33	55	56	54
ACGTCTCGTATTGTCG	ref_5860_new	26	18	37	21	28	24	34	37	28	27
TTTTGTCTCGAAGCGA	ref_5860_new	0	0	0	0	0	0	0	0	0	0
CTCCCTCCGGTTAAAG	ref_5860_new	1	2	3	0	0	0	0	0	0	0
TATCCGAGAGTCCCTT	ref_5860_new	15	19	22	20	21	11	16	14	19	14
TTTTGCTCGTATGAGC	ref_5860_new	0	0	0	0	0	0	0	0	0	0
GGATTGGGTAGGTCCG	ref_5860_new	80	74	79	99	69	69	82	76	91	80
ACTGGGGTTGTAATCA	ref_5860_new	24	23	28	31	30	29	29	25	24	20
TTTATCCCATAAAGCA	ref_5860_new	195	238	268	198	210	196	215	204	250	195
TCACGCCGGGCCGAAC	ref_5860_new	66	53	60	71	55	45	55	60	66	58
TTTTACTACATTCCGC	ref_5860_new	65	81	84	75	94	101	65	84	58	63
CCGTATTAAGGGGTGG	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCGCGTACGCTTG	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
CTTAACGCCTTCTGGT	ref_3117_reverse	45	66	56	54	47	57	55	47	41	49
TCATTTTCTTTGGCGA	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTGCGTTTAGAGC	ref_3117_reverse	11	8	12	9	13	12	8	6	7	10
CTGAGACATGGGTATA	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGCCGTTTCCTTA	ref_3117_reverse	30	50	43	21	48	47	46	40	58	22
GTCATTTTTCACTCTC	ref_3117_reverse	77	56	78	56	62	64	86	65	60	40
GTTAATAAAGTCTCAT	ref_3117_reverse	222	193	267	222	193	213	253	215	238	188
GATGTTTGTTTATCCT	ref_3117_reverse	12	2	9	8	2	7	5	5	4	2
TATAATTTACGTTTAA	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
GATATTCAACAATTCA	ref_3117_reverse	11	6	10	17	6	12	10	6	11	14
GCGAGAACACGTGCTC	ref_3117_reverse	14	8	11	14	8	15	12	18	8	12
TACATTATAGGGTTTT	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
GTGATACACGCCTCTT	ref_3117_reverse	30	48	27	23	33	28	25	30	20	17
AACAAGACATTGATTT	ref_3117_reverse	79	69	107	90	82	84	73	82	92	91
ACAGTCGGGCGGCGTT	ref_3117_reverse	28	26	28	30	8	19	18	20	25	14
TCCCGACCATTTTTGG	ref_3117_reverse	86	87	106	98	101	97	97	79	101	85
GACCCTCGTGGGATTA	ref_3117_reverse	25	27	39	37	26	42	22	35	30	40
AAGGTGACGTCTTAGA	ref_3117_reverse	78	70	134	102	92	105	64	81	97	79
TTTTGTTACGGTACTT	ref_3117_reverse	39	51	49	53	61	52	42	38	41	40
ACTCGTGCGTGGTTGT	ref_3117_reverse	233	247	276	219	258	209	306	181	278	177
CCCCGAGTTACTTATG	ref_3117_reverse	18	19	14	7	19	13	23	18	20	7
CGTCCCTCAGGGGCTG	ref_3117_reverse	17	17	15	15	8	16	8	14	9	11
GTTTAGTATCTACGCT	ref_3117_reverse	14	8	17	7	12	5	8	12	9	11
TTGCGTTTCTTGCCGG	ref_3117_reverse	6	8	16	13	12	9	16	15	13	13
CAGTCGCGCCATCGTA	ref_3117_reverse	51	25	45	62	46	60	39	65	32	53
CAGGCTGTACACAATC	ref_3117_reverse	85	63	113	95	68	85	82	58	85	72
CCATCAAAACCCCACA	ref_3117_reverse	7	8	8	13	11	6	4	8	10	7
CTCGACCATCTGTGTG	ref_3117_reverse	21	104	27	30	88	24	75	16	93	24
ACTTCTTAGCTGACTT	ref_3117_reverse	8	15	13	11	15	11	12	4	13	7
ACACGAGGGATTCTAC	ref_3117_reverse	52	30	56	57	45	34	42	30	46	44
TCGCTGTTGCCATTGG	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
CATCTTCGTAAGCATG	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGGCGTTGTCTTG	ref_3117_reverse	131	166	144	187	182	127	160	118	191	129
CTCCAATTGAAATTGA	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
AATTGTAGATTTATTC	ref_3117_reverse	5	3	9	10	7	5	3	7	8	9
TGCAGCGCCCCATCGG	ref_3117_reverse	117	96	118	138	108	103	131	106	103	114
TCCGGTATTCTAAATT	ref_3117_reverse	10	16	11	6	7	12	2	12	8	8
AGAACATTTTATATTG	ref_3117_reverse	47	55	75	51	41	44	47	66	51	59
AGCGTAAGTGCCGCAC	ref_3117_reverse	155	126	179	136	137	126	147	168	152	130
TACCTTAGCCGGTATG	ref_3117_reverse	25	34	25	28	28	26	27	28	28	24
CATGTCTCCCAAGCAG	ref_3117_reverse	100	69	104	125	86	82	88	64	90	107
TTTCGCAATTTGGGTG	ref_3117_reverse	64	91	93	63	50	74	63	56	83	63
GTCGTCTCCTCCTGAA	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCTATTGATCTGC	ref_3117_reverse	47	41	73	46	57	55	44	41	41	43
AAAGGTTTTTTAGGTA	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
TGTACTAGACTGTGGT	ref_3117_reverse	52	68	74	80	59	39	66	73	69	71
CTCGCCATTAAGTACT	ref_3117_reverse	0	0	0	0	0	0	0	0	0	0
CCTATTTGATGGGTCT	ref_4642_upstream	16	36	29	18	48	21	32	14	31	20
TTTTCGTGTCCCATGT	ref_4642_upstream	28	47	34	33	30	31	35	31	34	20
TTGATAGTAACATAGA	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
TTCAAGTTGGACACAT	ref_4642_upstream	1	4	2	6	2	3	3	5	6	2
CGGGCTGGAGCTCCTC	ref_4642_upstream	26	47	37	20	46	27	68	34	40	17
CGAGGTCCACCGCCTT	ref_4642_upstream	0	2	7	2	1	2	5	2	2	6
CCGTCTTTATTAAGGT	ref_4642_upstream	69	105	84	73	123	62	91	62	102	60
TCTTTCATTGGGTAAT	ref_4642_upstream	15	15	19	11	17	13	26	5	20	18
CCAGTATAAGCCATAC	ref_4642_upstream	0	7	5	6	4	4	2	5	3	2
ACTGTGCTCGCGAATT	ref_4642_upstream	15	22	17	17	27	12	19	17	12	22
CTTCGAACTCCGACGG	ref_4642_upstream	1	2	1	2	7	2	0	4	1	0
TAAACCGCGCGATTCC	ref_4642_upstream	13	20	30	14	21	15	23	19	31	20
CGAACGCAGGTATGGG	ref_4642_upstream	17	23	23	12	33	14	28	20	23	15
CTTCCTCCTAATTTGA	ref_4642_upstream	13	14	13	14	17	3	10	7	19	9
GGCTGGCCTCACCTGG	ref_4642_upstream	3	1	6	2	5	5	3	4	4	5
CCTCATTGAACCTTCC	ref_4642_upstream	30	58	43	58	76	37	49	35	73	39
TATGAGGTTCGTGGTT	ref_4642_upstream	1	0	1	0	0	1	2	0	0	0
GAATAATCTCTGCTCA	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTCTCGCCCGCTG	ref_4642_upstream	12	12	18	8	17	7	16	11	19	7
TTGTCTGTGAAGGTCC	ref_4642_upstream	0	1	3	1	1	2	2	0	4	4
ACTCCTTTTTGATCTG	ref_4642_upstream	2	3	1	0	3	0	3	1	3	1
ATTTGGTCATGTTTAG	ref_4642_upstream	31	63	38	33	48	38	46	21	57	34
GCTTCAGTGGCTGATT	ref_4642_upstream	17	30	28	26	42	20	34	13	43	15
AGGCCAGACGGCCTGC	ref_4642_upstream	5	18	14	13	22	4	17	12	13	9
ATGTCGTCTCTTTCAA	ref_4642_upstream	3	0	4	1	1	2	2	2	1	2
TCGCCAACGCACGTAA	ref_4642_upstream	4	3	3	12	7	4	5	3	8	6
CCTGAAGAGTTTTGCA	ref_4642_upstream	25	32	32	21	29	20	39	26	37	28
CACCTGTAGATTGATG	ref_4642_upstream	41	71	40	30	55	43	68	37	52	43
TGTTGATAGGGTTCGG	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
TTATGAAGGTCTTTAT	ref_4642_upstream	29	57	48	32	43	50	45	31	63	36
GTTCACCATCTTGTGC	ref_4642_upstream	19	32	29	24	38	23	25	33	36	30
CTGTTGAGGAGTGTAC	ref_4642_upstream	200	270	232	205	288	171	307	171	317	190
CGAAACTAATTATTCA	ref_4642_upstream	29	31	33	29	37	23	46	31	40	17
TCTTTTTCGGGTTCTT	ref_4642_upstream	2	0	0	0	2	1	0	1	0	0
TTGATGTTCTTGTGTG	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
ACCAATTTCCTGGCAG	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
CAAGAGTTGAGCCGCC	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTTAATGTGGAC	ref_4642_upstream	25	56	42	29	59	36	51	42	53	21
CTCACGGTCAGCTGGC	ref_4642_upstream	22	59	19	14	63	20	55	11	72	11
ATGTCTGCTCCGTTTT	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
GTCAATAATCGCCACT	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGAACCTGCCTGT	ref_4642_upstream	27	32	17	16	16	21	39	18	27	15
AGTTTAAGCAGATCAC	ref_4642_upstream	75	94	98	66	102	78	97	71	106	53
CCCGCTCCTCACCGAA	ref_4642_upstream	4	12	4	8	7	4	6	7	14	4
TCGGACTTATTCTCTT	ref_4642_upstream	17	24	6	21	16	20	20	16	23	7
ATGCGTTCCGGTGGCA	ref_4642_upstream	16	11	11	18	33	11	15	11	14	13
GCCAAAGATGGGCCTG	ref_4642_upstream	9	16	12	13	15	7	20	12	17	9
CTTCTTCACGTCCAAG	ref_4642_upstream	27	23	33	13	41	17	33	20	30	17
CCGAGGCGTGGGTTTT	ref_4642_upstream	17	27	39	33	40	26	34	25	44	18
CGTAGTCCAGCTGTGT	ref_4642_upstream	11	20	14	10	14	10	11	10	25	8
TACCTATGGCCCTGGG	ref_4642_upstream	37	45	57	38	61	43	60	37	59	31
CTCAGATTGAGTCAGG	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTGCCGGCATAGC	ref_4642_upstream	7	5	8	9	7	8	7	6	7	4
TAATGTGTAAGTTCTT	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTACCTGTTATGT	ref_4642_upstream	1	8	1	0	9	0	9	3	13	0
GCTCTTGGACAATTGC	ref_4642_upstream	0	3	3	4	7	2	3	0	11	3
TGTTCAACACGCTCCG	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGGTAATCTCTTC	ref_4642_upstream	160	178	181	176	192	166	200	185	235	178
TAAACTTGTTTTCGCC	ref_4642_upstream	8	7	11	7	8	6	16	6	13	7
AACAACTGTAAACTAG	ref_4642_upstream	44	80	59	42	78	44	98	36	82	37
CGCCCCCACCGATTTG	ref_4642_upstream	4	22	24	15	22	8	16	12	28	11
GTCCCTCAATGCACTG	ref_4642_upstream	3	13	3	6	6	2	9	1	13	7
TAAATCGCTTGTCTGT	ref_4642_upstream	2	12	11	3	17	7	4	9	4	9
AGATCTTTGTACCCAA	alt_4642_upstream	25	37	28	18	29	22	41	31	31	18
CGGGAGGACACGATTC	ref_4642_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTTCTCGTTCAAG	ref_3640_reverse	101	97	122	95	87	110	121	115	118	102
AACCCGTTTCACTGAG	ref_3640_reverse	17	11	20	17	15	18	22	11	7	13
ACTACACGTGGGTACA	ref_3640_reverse	124	116	154	137	114	124	107	114	121	129
GCGTTCCAAAACGTTT	ref_3640_reverse	46	36	67	58	45	45	47	52	41	46
CGATTCGCGATTGCTC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
ACATCTGCTAAAACTT	ref_3640_reverse	48	33	45	41	32	32	42	43	38	30
GATCCACGGGTGCTAT	ref_3640_reverse	78	77	84	64	55	66	78	62	83	72
GTACGGCTGAATCTAA	ref_3640_reverse	171	120	200	168	126	148	133	176	159	163
TTTTCATGGTGTGATC	ref_3640_reverse	53	54	63	65	38	53	50	61	50	63
TATTTTGTGACATTTT	ref_3640_reverse	6	11	12	5	5	7	5	6	10	10
CATGTCAGTGGTCGTC	ref_3640_reverse	663	592	857	744	627	666	619	668	630	641
CCACCTCCCAGTTTTC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TACCTCTGGCGACTTG	ref_3640_reverse	18	24	23	18	20	19	22	16	19	16
CACATCGCTCTAATCG	ref_3640_reverse	6	8	15	8	14	9	6	6	13	7
GTTGAATAAATTGTAA	ref_3640_reverse	47	42	53	55	21	50	55	32	47	42
AATTATATGAGACCCA	ref_3640_reverse	30	35	28	33	28	33	28	23	26	25
TTTAGATTTCGTCTTT	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
CCTATAACCTCCTATT	ref_3640_reverse	24	20	25	21	29	23	25	20	32	13
CGTCTCGCTTTTTTTT	ref_3640_reverse	15	27	22	14	25	9	19	16	27	9
GCTCTTTGAGCCTAAT	ref_3640_reverse	155	129	248	160	174	178	136	173	173	143
TCGCTGATTCGTCGTG	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
ATACGAGTGTCCGCCC	ref_3640_reverse	9	18	20	18	21	17	9	23	12	10
CGGTTATCATAATTTA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
CCCCACATTTGGCGCA	ref_3640_reverse	4	3	4	1	1	0	4	5	1	7
ACAATGCATGAGCACG	ref_3640_reverse	12	15	24	16	14	17	7	17	11	19
TCGGGCGCGATGTAAA	ref_3640_reverse	14	2	17	11	7	9	7	9	10	6
GCCTTGTAGTCTTCGC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTGCGCCTACACTTGG	ref_3640_reverse	0	1	4	4	0	1	0	0	0	1
ATCCAGAACTGTTTTT	ref_3640_reverse	54	66	70	67	78	64	69	66	67	60
TGTCGAGTTGCCTCAG	ref_3640_reverse	47	43	61	52	43	52	34	35	43	49
TAGAGTCACTGGACTC	ref_3640_reverse	28	19	41	31	31	21	35	22	32	28
CGGTTCCAGTATTTAA	ref_3640_reverse	38	44	61	41	44	45	42	44	47	43
GTCAAATATCGGTTTA	ref_3640_reverse	29	25	29	29	25	21	31	25	29	14
CTTCCCCGTTCATCCG	ref_3640_reverse	4	17	6	15	17	7	17	9	13	5
TTAGCTGCGCTCGGCC	ref_3640_reverse	56	66	67	71	63	67	74	68	69	58
TTTACGGGGACTTCCA	ref_3640_reverse	178	177	223	175	158	155	189	175	172	157
ATGGTTAGCACGCCCA	ref_3640_reverse	52	48	51	54	59	55	48	51	71	45
TGCCCGGATGTCTAGC	ref_3640_reverse	79	61	113	92	75	82	68	92	56	86
GACCGGTAAGTAGTTC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGTTTTTGGCGCT	ref_3640_reverse	4	2	9	6	15	11	8	3	8	6
GCTTGCAGCATCATTT	ref_3640_reverse	71	76	84	85	60	63	73	56	67	45
CTGCCGCTGCGCGACG	ref_3640_reverse	117	76	129	127	122	94	105	99	121	109
CCTTACTTACGTCAGC	ref_3640_reverse	94	90	87	83	75	87	99	81	81	85
TCGGTAAACTACAGTC	ref_3640_reverse	26	26	37	25	19	31	19	34	20	24
CGGTCAGGCGCTAATG	ref_3640_reverse	23	19	21	21	33	20	22	19	29	20
GTCCCCCTTTACTGCC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
GTGACCCTCCTCTGCC	ref_3640_reverse	67	64	93	87	68	67	69	68	74	66
TTAGGGTGCGTCCCTT	ref_3640_reverse	42	20	59	39	27	29	37	42	46	42
TACTCCTAAAACCGGT	ref_3640_reverse	26	36	40	25	25	17	25	24	23	16
GTATCGCACCTCAGTT	ref_3640_reverse	81	63	96	90	77	82	70	76	72	66
GTGGTTTCGGCACCAT	ref_3640_reverse	172	153	217	158	167	172	154	180	183	171
CGAGGAGAACAGTTGA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCGGCACCCTTAC	ref_3640_reverse	114	98	151	118	119	111	130	114	106	116
TCCGGTTTCGTAGACA	ref_3640_reverse	51	48	68	73	34	54	61	52	50	55
CCGGTTATATTGGCCA	ref_3640_reverse	88	76	103	83	71	88	73	93	84	83
TGCGTGCAAGTCAATC	ref_3640_reverse	83	61	92	87	55	70	72	74	61	53
TGATTGGGCCGCCCGT	ref_3640_reverse	17	21	25	30	18	22	22	16	23	18
ATCTATGTATAAAAGC	ref_3640_reverse	23	34	41	39	30	30	21	28	25	24
AATACACGAAGATTCT	ref_3640_reverse	36	41	53	58	39	52	50	51	38	26
TTTGATTCAACCATCC	ref_3640_reverse	40	36	38	55	42	61	44	50	44	48
CTTCGTTGTACTGCCA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGGAAAGTTTTTC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTCGAAAGATATT	ref_3640_reverse	24	16	43	37	30	37	17	29	17	22
CTCGCACCCCTATAGT	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCAATCGGGTTAA	ref_3640_reverse	39	29	34	37	29	29	31	30	40	33
GTGCAGCGGTGTCGGA	ref_3640_reverse	23	15	19	19	20	16	9	13	20	17
TGCAGACAGCTCTTCA	ref_3640_reverse	20	7	12	10	13	12	17	23	8	13
TACGATATGTGTCCTT	ref_3640_reverse	35	35	47	40	39	38	31	38	41	30
TCTTAGCTGGGAAGCG	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TAACCTGCGTCTAGTA	ref_3640_reverse	26	45	39	33	53	22	22	21	44	12
TATGCGGACCCGGTCA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
GGTAGACACGGGACGT	ref_3640_reverse	23	27	27	26	18	27	30	24	28	41
GTTTTACAAGCGATGA	ref_3640_reverse	60	42	79	49	45	51	40	59	60	47
GTTTATGTTGCGTACT	ref_3640_reverse	0	0	0	0	0	0	0	1	0	0
CTGACAGGCAGACTTG	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCGTCCGCTGACT	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCGCCGCTCCGCG	ref_3640_reverse	28	53	37	34	44	31	60	27	59	22
GCTAATCCCTGCTTCT	ref_3640_reverse	23	16	19	23	17	11	17	17	10	19
CCAATAATTAAAGAAA	ref_3640_reverse	54	39	63	58	42	32	66	41	52	41
CCATTCTAGGGTTACG	ref_3640_reverse	35	35	56	30	27	40	21	42	29	34
AGTCGGCAATTACATT	ref_3640_reverse	80	42	73	67	55	55	54	56	38	60
GTATCTCATGTGGAGT	ref_3640_reverse	40	21	63	36	36	44	26	31	36	39
TAAGTTCGCCGACTGT	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
AGCGGAAGTCATTTTC	ref_3640_reverse	1	2	4	1	2	2	1	5	1	2
TCCCTTACACCATAGT	ref_3640_reverse	16	10	25	22	10	16	20	11	16	24
TCCGGGACTTGTTTCA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTGTTCTGTCTTA	ref_3640_reverse	73	63	86	89	95	61	64	91	79	73
GCAGTTAATTGCTAGG	ref_3640_reverse	21	18	19	20	10	24	15	16	9	16
TTGATTGGGGATGCTC	ref_3640_reverse	72	60	66	52	51	55	61	58	53	58
ATGCAAAGCCAGTTGC	ref_3640_reverse	14	6	10	23	9	12	7	8	10	18
TTTCGAGTTACATAAC	ref_3640_reverse	10	5	11	10	5	5	2	11	4	8
GTTCTAGTGTAATCCG	ref_3640_reverse	54	70	81	66	70	60	56	62	64	53
ACCGGCACCACGTTCT	ref_3640_reverse	100	84	112	103	78	82	73	97	74	82
TCGATACAGTACTTCT	ref_3640_reverse	123	82	146	134	96	108	97	89	137	107
CTCTTAAGGTAACCTC	ref_3640_reverse	4	11	9	4	11	10	10	8	7	7
TACCAATTTGATTGGA	ref_3640_reverse	28	22	40	25	36	21	26	19	38	20
CGCCGGGATTGAACAA	ref_3640_reverse	84	58	93	84	56	63	64	64	66	72
TACGTGGACTACGTGG	ref_3640_reverse	55	46	61	57	37	45	45	38	55	28
CTATCTGCGCATCATA	ref_3640_reverse	23	23	22	22	26	15	14	22	27	8
TAACAACTGACAAGTC	ref_3640_reverse	134	103	167	133	127	117	102	103	99	130
TACCAGTTCGATACGG	ref_3640_reverse	8	1	12	7	16	9	10	6	13	11
CTTAAGCAGTCTGCGG	ref_3640_reverse	11	10	8	10	9	14	16	17	10	7
CACAAATTGATTGACA	ref_3640_reverse	54	40	43	55	48	49	44	45	51	48
GCACTGATACTTCATA	ref_3640_reverse	33	30	39	36	24	33	28	34	27	24
CAAGGGATTCGTAGCG	ref_3640_reverse	5	4	7	8	7	9	8	13	9	8
GTGTGATTTTCGGCTG	ref_3640_reverse	56	52	68	46	76	40	40	37	40	33
CTTTTCACATGTAAGT	ref_3640_reverse	78	61	77	83	60	67	58	54	61	42
CCTAAACCCCCGTGCG	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
CATACCGTTTCTTAAC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
GAAGTTTTTCCAGGGT	ref_3640_reverse	91	72	77	64	64	66	80	76	64	63
GAAACACACCATTTTT	ref_3640_reverse	12	14	17	35	21	19	25	23	17	21
CAACTCGGAATTGTCA	ref_3640_reverse	19	23	26	27	20	19	19	21	23	23
GATATTAACGGGATGC	ref_3640_reverse	6	7	10	7	7	6	4	4	3	7
GAAGAGGCAACCTGCA	ref_3640_reverse	33	35	41	58	35	27	40	34	38	43
TTAAGGCTGTGGATAG	ref_3640_reverse	72	82	135	83	85	76	77	95	75	80
GCGCTAGTCCCTCACT	ref_3640_reverse	36	23	34	32	34	27	32	19	27	21
TGAGTCATTTTTTACT	ref_3640_reverse	34	37	51	31	34	39	37	28	26	37
GTAACTGGGCTAGATC	ref_3640_reverse	44	37	56	42	35	30	39	31	44	57
CTTTACAACTCCCTTG	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGCCACCTGGCTC	ref_3640_reverse	64	51	71	78	40	49	53	66	54	58
GTAAGCATCTCCGAAC	ref_3640_reverse	64	42	78	76	48	71	52	47	49	60
GTAGCACTTCCGGCTC	ref_3640_reverse	0	0	0	2	0	0	1	0	4	3
GGAAGCCGTTATCTTC	ref_3640_reverse	56	52	80	43	41	41	43	47	35	41
CCTCACATGCCCCTTA	ref_3640_reverse	58	61	87	54	57	64	38	67	60	61
ATCGGTGTCTCCCCTA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTCTAACCATGAG	ref_3640_reverse	270	218	338	285	231	279	225	269	239	255
AATGTTTGATATGGTA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
AAGTAGGTTAAATCTC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TATGGATCCGCAGGTT	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
ACTATTACACTTTCAG	ref_3640_reverse	2	7	7	3	6	8	7	6	3	3
AGTGTGGTTAATTGGG	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTTGGTATAGCTT	ref_3640_reverse	118	72	130	89	85	74	86	92	97	66
ATGGAGGGTCATTTTC	ref_3640_reverse	71	43	86	63	62	70	69	59	76	64
TTCCTTGTGGTTACCG	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
GCGGGCGTTGGGATCT	ref_3640_reverse	74	65	93	78	85	68	65	88	75	61
GCCTGACGGTGCAGAA	ref_3640_reverse	32	38	45	52	45	35	54	36	48	33
AGTCGCAGCGAATTTA	ref_3640_reverse	18	11	22	11	13	8	11	10	7	13
GGGTCTTAAAATTCTT	ref_3640_reverse	24	22	31	42	12	29	17	13	23	22
TATTCTCATACGCAAC	ref_3640_reverse	30	30	48	38	32	26	32	24	27	39
CCTGGGTGTGCCAGCG	ref_3640_reverse	12	3	9	15	9	1	5	9	11	10
CTTCGCTCGGCGGCGC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCCGCGGTGTCCC	ref_3640_reverse	24	23	22	17	22	19	16	14	13	6
CATACGTCCCTTAAAC	ref_3640_reverse	28	40	39	35	39	31	39	33	31	26
CGTGCTCTTGAAGGCA	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
GGATGTTGGCTACCAT	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGTATAAATCCCC	ref_3640_reverse	0	0	0	0	0	0	0	0	0	0
TATATACTCTATGAAC	alt_4553_fdr	11	6	9	16	10	8	10	10	13	2
CTCTGTCGGTAGGCAG	alt_4553_fdr	3	8	2	6	8	5	8	4	7	2
CGGAAACCCAATCTGT	alt_4553_fdr	48	56	55	41	80	34	61	42	77	35
AACGCTTCACCCTTTG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TACCAATGACGGCAAT	alt_4553_fdr	41	51	48	46	41	43	46	43	44	38
CTTATTAGTTCCATTC	alt_4553_fdr	12	22	23	23	23	22	23	21	28	16
TCTTTCTATTTAGCAC	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
ATGATCGAGTAAGGAG	alt_4553_fdr	1	5	2	0	0	3	2	1	2	1
ATTGGCCGGATATTCT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTCCACCTTATCAAGT	alt_4553_fdr	87	92	98	88	102	73	114	96	120	54
CCTCGTTGATGCGTTG	alt_4553_fdr	12	27	24	14	17	14	24	11	18	14
ACCTCGATCAAGCATC	alt_4553_fdr	8	8	12	7	7	11	13	8	13	6
ATCGGCCATTGTTTCG	alt_4553_fdr	37	45	39	29	60	33	41	41	47	27
TAAGGCGCGTTTTCAT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTCTATTTCGTAT	alt_4553_fdr	6	12	15	11	15	2	14	20	16	13
GTCGTGTGTATAATAA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCGTGCCATTTTT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TACGAACTATTTGAAC	alt_4553_fdr	74	107	83	70	100	92	86	65	110	76
GTATGCCCCTGTACGT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAATCCTTCTGTG	alt_4553_fdr	17	22	18	25	23	21	19	13	33	13
GTAACTTAGGCTATTT	alt_4553_fdr	27	27	27	17	39	24	24	17	24	21
GCAGGGGGCGGACATT	alt_4553_fdr	66	66	79	55	73	56	80	56	89	54
TTCGTCCGACGACGCA	alt_4553_fdr	13	29	14	8	13	19	16	12	27	18
GAAGACTTGCACTATT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCCAAGTGAAACA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCAAGTGAGATAG	alt_4553_fdr	36	56	52	55	68	49	54	45	58	39
CTTCAATGTCCTGCGG	alt_4553_fdr	20	8	21	14	25	7	16	17	26	18
CACGCTCAGCATCCCG	alt_4553_fdr	39	64	71	58	45	56	65	55	67	37
TGAGTAGCGTCTTCTC	alt_4553_fdr	2	3	5	3	0	2	5	4	1	8
AGATGGTAGCTCATAT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TCGACCATCGGACCGG	alt_4553_fdr	26	26	34	39	51	26	54	25	44	29
CAGAATATGTTTAAAC	alt_4553_fdr	7	3	5	4	7	4	7	4	8	6
TACACCAGTGTTAGCT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GGCGTTCTAGGGTATG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCACCGTATTACA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTTTCCGGTCATT	alt_4553_fdr	51	63	47	47	63	37	71	34	45	33
CCTTATTAAATGTAGG	alt_4553_fdr	33	39	31	20	39	26	51	27	55	25
AATAATTGCACTACAT	alt_4553_fdr	2	8	3	5	6	4	7	2	16	1
CTGGCTCAACTCCGGG	alt_4553_fdr	4	11	4	6	7	1	13	6	10	2
TTTGGAGTCGTTTTCG	alt_4553_fdr	16	35	36	22	33	26	45	17	42	24
CAGTTCTTGGTACAGC	alt_4553_fdr	19	29	23	26	20	21	35	21	28	17
TTTTACGCATTGACGG	alt_4553_fdr	220	313	259	247	289	230	295	204	340	213
TAGGTTCAGAGTTCAC	alt_4553_fdr	74	81	73	73	114	61	93	61	104	55
TCGAAAACATGTGTCT	alt_4553_fdr	6	3	3	4	3	2	4	4	3	3
TCTGATTTACTGGTGA	alt_4553_fdr	21	43	14	17	28	31	19	34	27	16
TGTTTTCCATGGCAAT	alt_4553_fdr	16	26	26	18	33	34	33	14	32	21
GGGCATTGGTCAGTGT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GCCACGCGCAAAACTG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CTAGAATCTGATAGGA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GTTCAGCCCGCAACCA	alt_4553_fdr	10	20	20	22	15	15	16	11	21	11
TCTCGTTTATCGATAC	alt_4553_fdr	34	31	30	29	29	24	20	22	47	31
TTCGTATAATTAACAT	alt_4553_fdr	37	70	30	35	51	29	54	25	30	33
GCACTGCTGCCTAAGA	alt_4553_fdr	37	43	39	37	59	36	31	36	31	31
GGGGCCGCTCTTGAGT	alt_4553_fdr	5	6	17	10	10	9	15	10	13	5
CGCATCGTGACGGGCC	alt_4553_fdr	49	49	49	43	39	43	57	34	45	46
CTATTTACATATTTGC	alt_4553_fdr	6	12	9	7	5	9	8	8	7	2
AGAGCATCTGACAAAT	alt_4553_fdr	58	78	60	52	74	61	68	70	75	58
TAATTGCCTTCGCTGT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCGGTAAGGTCTG	alt_4553_fdr	13	19	25	21	20	18	24	8	22	10
GGGTACGGCGTGGCTT	alt_4553_fdr	34	56	60	38	52	31	48	30	48	37
TTAACGAATTTCAGCT	alt_4553_fdr	5	6	4	9	7	5	6	5	4	6
TTGGACATATACAGAG	alt_4553_fdr	40	74	67	53	78	48	65	42	64	38
CTAGGTGTCATTAACG	alt_4553_fdr	6	9	2	5	7	6	4	6	12	8
CCCGCGCTTTTTAGCT	alt_4553_fdr	17	21	19	11	19	22	31	9	12	10
TAATCTATTCTTATGA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCGCGGGCTGTTG	alt_4553_fdr	38	50	46	32	35	35	47	24	36	28
GCTCATGGTGCGATGA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCACGGCAGAGCG	alt_4553_fdr	31	28	41	33	33	30	27	33	32	27
TTAGTGTGTCAATTTA	alt_4553_fdr	11	18	13	3	14	11	25	9	16	12
TGCGGGGCCTAGATTA	alt_4553_fdr	26	33	61	35	43	39	45	23	38	31
ACCCATTCGTGTACAT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCGGGCTCCTGAG	alt_4553_fdr	15	24	17	13	28	13	23	10	32	14
ACAATAAATCGGCTGT	alt_4553_fdr	10	12	28	14	9	12	22	8	26	10
CACCATTGATATTTCT	alt_4553_fdr	37	43	37	25	43	29	36	14	43	30
CCCTTGCTAAGAACGG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CGTACAGTATGGTCTC	alt_4553_fdr	31	50	25	25	47	30	57	27	55	35
GTAGACACGGCGCGTG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTTACGTCAATAC	alt_4553_fdr	72	143	109	98	143	71	148	89	162	78
ATTGAACAAGGGGCAT	alt_4553_fdr	35	34	26	19	38	20	29	28	36	25
CTTTCTGTATCGTTCT	alt_4553_fdr	23	19	37	19	22	24	21	22	24	15
ATCGTCTGTAACATGC	alt_4553_fdr	4	8	8	7	14	10	7	6	15	4
GTAGAATTCTGGTTCA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
ATTGATGTATTTTATG	alt_4553_fdr	48	66	53	41	59	58	64	49	74	46
ATACTCTTAGCTGATC	alt_4553_fdr	8	12	7	12	8	7	10	6	8	9
TCTGTGTCACTCCAGT	alt_4553_fdr	3	7	2	5	3	2	11	2	3	2
ATAGTGGTGAGGCCGG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGAAATGAATTTG	alt_4553_fdr	92	104	112	108	114	98	121	96	121	61
ACCAGCAACGTCGCAT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CGTACGCTTACAACGT	alt_4553_fdr	8	19	16	9	8	14	7	12	6	9
GTTTTCACTACTTCTA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGAATCAGGGTGT	alt_4553_fdr	8	15	18	11	10	8	9	13	7	13
AGCCACGGGTCCTAAA	alt_4553_fdr	3	1	1	3	1	1	1	2	1	0
CTATCGGCACGCAACA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGTTAGCAGTAT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCCTTCTAATTAG	alt_4553_fdr	7	22	18	23	22	12	27	22	31	21
GATTCGGGCTTGACGT	alt_4553_fdr	11	26	23	19	16	18	22	22	19	15
ATCGTCTTTCTCTGAA	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CAATGTGCCCCACATT	alt_4553_fdr	83	83	84	75	101	98	83	81	104	69
TATCAATTATTCCGAG	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CCAATGGAGCGCCATT	alt_4553_fdr	11	13	24	9	13	11	7	11	24	10
TAGTCGTGCGCTATGC	alt_4553_fdr	8	15	11	9	5	8	10	2	6	8
TTTCGCGTAACGCCTG	alt_4553_fdr	63	80	85	62	87	73	92	60	91	69
GCCTTGGGGGCTAGAG	alt_4553_fdr	49	57	47	41	49	49	57	42	74	37
GCCCTGCGTCTCATAG	alt_4553_fdr	65	125	71	65	101	63	127	81	119	55
TCCTACCACCTCGTCA	alt_4553_fdr	1	2	0	0	0	0	0	0	0	0
CCCACATAATTCGACC	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GTATTCACATTTCCGA	alt_4553_fdr	25	42	41	31	27	32	28	26	43	29
CGTACTACCTGGGTTG	alt_4553_fdr	1	11	8	10	11	6	12	7	12	5
TGAAGCTCTCGTCCAT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
CGACCGTGCCATTTTT	alt_4553_fdr	0	0	0	0	0	0	0	0	0	0
GCATTAACGCATGTGG	alt_4553_fdr	20	31	26	23	21	21	27	41	35	22
GACCTACACATCCCGC	alt_4553_fdr	4	11	13	5	17	6	20	11	20	6
CTTGATAGCATATGCG	alt_4553_fdr	6	24	15	26	26	12	22	18	31	19
CGTTGAGTCTATTTTC	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
TACGGATTTAAGAATG	alt_5055_upstream	51	60	37	33	38	35	38	38	47	44
GAATTTGGAGCGTTTT	alt_5055_upstream	20	23	39	25	32	43	32	32	17	23
TGTCATCATCTCAGTA	alt_5055_upstream	19	26	32	35	20	12	34	21	30	15
ATCTCCAAGATGTACG	alt_5055_upstream	98	128	131	108	111	103	129	73	128	98
GGGGCTTAATGTTAGA	alt_5055_upstream	7	15	10	12	10	13	14	11	11	17
GTGCCTAAGATTTCTG	alt_5055_upstream	5	15	6	4	14	11	7	8	14	11
CCCATCTAGGACGTGG	alt_5055_upstream	18	24	23	23	20	20	29	10	22	14
GATCACGTCGGTTCAG	alt_5055_upstream	10	9	12	9	7	5	11	8	11	11
CCCGGTGTCGATATCG	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGTTTTTTCTGAA	alt_5055_upstream	10	8	4	5	5	6	9	7	9	5
GAATCCTGTTTTTTAT	alt_5055_upstream	18	9	19	17	8	15	9	14	22	12
ATCGTGCGCTTCCGAG	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGGCGGCGGCAGG	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
ACAAGTATGGAGGACA	alt_5055_upstream	24	13	22	26	20	25	17	25	20	26
CTTTTCGTTTATCTCT	alt_5055_upstream	66	61	69	63	58	55	45	51	57	50
TATGACTGGGCGTCAA	alt_5055_upstream	43	42	50	40	57	53	57	39	64	42
ATACTAATGACTATGC	alt_5055_upstream	15	25	14	19	20	9	33	15	35	12
CGCATAATATACATAC	alt_5055_upstream	22	12	23	19	21	18	28	18	24	13
AGTGTTGTTATGTATA	alt_5055_upstream	36	49	30	36	57	30	48	42	54	26
TCGTTTGCTGCAGTAT	alt_5055_upstream	25	27	27	23	31	29	42	24	29	15
TGGAGCTGTCAGCCCC	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTCCTGGTCGGCA	alt_5055_upstream	14	16	15	13	17	10	10	11	10	7
CGACCTTACGATACCC	alt_5055_upstream	13	27	27	25	46	16	43	21	29	17
CGGTTTTTCAGGAGGC	alt_5055_upstream	8	50	6	6	53	5	75	10	56	8
GCGCCCCGCTTATTAG	alt_5055_upstream	4	3	6	3	2	3	3	2	3	4
ACATCTGGCTATTGAT	alt_5055_upstream	23	34	42	24	35	32	32	27	42	18
GATCCGCATCGGCTGC	alt_5055_upstream	88	100	117	116	91	86	80	86	97	87
TGTCGGGTCATACATT	alt_5055_upstream	9	20	28	11	12	16	14	21	22	14
CTGCAGTGCGTACGTT	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGGGATGCGCGCT	alt_5055_upstream	0	0	0	0	3	1	2	1	2	1
AGCTGGTAGCGCAGTA	alt_5055_upstream	9	16	19	17	24	16	33	21	24	19
CTTATTACGTTCCCGT	alt_5055_upstream	19	21	15	16	20	17	29	17	19	16
AAGAGTGTACTTCGCG	alt_5055_upstream	63	87	88	53	59	63	76	62	95	45
TCCCTCAGATAAAGGG	ref_5055_upstream	151	146	180	141	204	158	166	121	178	122
GGGTTTAACGCCCACG	ref_5055_upstream	90	66	110	99	84	78	63	96	90	89
AATCAGTCCGGAAAAT	alt_5055_upstream	86	94	70	60	74	59	101	67	79	61
TTCGATGTTAATTCTC	alt_5055_upstream	143	181	186	181	213	144	191	148	206	144
CCCCAATTTGGTTTTT	alt_5055_upstream	4	13	9	10	13	7	18	8	9	8
CTGAGCTTCAGTGGTC	alt_5055_upstream	55	70	70	47	71	56	54	39	56	57
TTAGTCCGTCTTTTTA	alt_5055_upstream	60	78	54	56	70	63	78	55	68	71
ACTCCTCTCTGCTAAA	alt_5055_upstream	34	44	59	56	49	50	47	30	55	36
TGGACATGTCTGGAGG	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
GAGCCGGTTGCGGTCT	alt_5055_upstream	11	13	7	11	16	3	14	4	12	7
CCATGAGGATAATTAA	alt_5055_upstream	49	54	56	62	66	33	50	38	55	55
ATGCGAAAAGCTCAGA	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCTCTCTGGCCAG	alt_5055_upstream	11	18	18	11	12	11	12	6	11	14
TCTCCGTCCGGGAGAG	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGCCTCTTCAGAT	alt_5055_upstream	0	0	0	0	0	0	0	0	0	0
TCACGCCGCATCTGTT	alt_5055_upstream	25	28	39	20	31	13	33	24	37	23
GCGGTTACATATTAGT	alt_5055_upstream	13	19	16	14	7	7	11	8	8	10
CACAGATACATTCGTG	alt_5055_upstream	24	60	31	24	41	24	48	18	49	23
ACTCGAGCGAGGCATT	alt_5055_upstream	9	8	12	14	10	10	8	4	15	12
ATAACGTAGTGGTGGA	alt_5055_upstream	56	72	72	57	65	57	75	53	61	47
CGTTTACGCCTCGTAG	alt_5055_upstream	2	2	4	3	3	2	2	2	2	1
AACTTTCCGCATTCGA	ref_5092_upstream	1	0	1	0	1	1	0	0	0	1
TTTTGGCATGATACAG	ref_5092_upstream	26	20	26	16	15	29	23	13	31	8
GGACATTATTTAGTGA	ref_5092_upstream	13	12	17	11	11	7	23	6	16	9
GCTCACCTTTGGGCTG	ref_5092_upstream	20	28	26	6	24	27	35	19	24	27
TTTTCGGTGGTCAGGC	ref_5092_upstream	9	20	18	12	17	19	24	24	22	21
GGCTTTCGACGTTCTA	ref_5092_upstream	18	12	9	9	15	10	20	9	18	9
CCCTCGTGATAGTTAT	ref_5092_upstream	7	16	6	3	16	5	8	5	13	4
AATATGGTCGGCCCGG	ref_5092_upstream	47	51	51	39	36	35	57	33	32	43
CGCCTTTTTCACTACT	ref_5092_upstream	5	18	5	4	10	5	8	3	10	9
GTAGACGGTCGCGCTT	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGCTCGCACCCAT	ref_5092_upstream	19	25	24	12	38	17	25	10	38	18
CTTTTACTTGCCCTGC	ref_5092_upstream	20	36	29	36	47	28	39	21	43	25
TCGTTCTCCTGTAGCT	ref_5092_upstream	1	14	3	2	3	2	16	4	11	4
ATGACGCAACTTCAAG	ref_5092_upstream	17	15	15	19	17	13	20	9	15	11
GCTCTACCACTCAGGA	ref_5092_upstream	18	24	19	12	10	17	24	18	16	17
TTGACTGTGGGGGTCT	ref_5092_upstream	12	15	8	9	28	13	19	14	21	13
TCTCGCATAGTGTCGT	ref_5092_upstream	54	72	74	63	66	51	79	59	67	53
GAACGGTAGCAGTCTG	ref_5092_upstream	0	2	1	1	2	0	1	1	2	0
TCGGGGCTGTCCTCTC	ref_5092_upstream	7	19	17	9	19	15	9	8	13	10
GAATAAGGGATCATCT	ref_5092_upstream	4	2	6	4	3	6	10	5	6	10
ACAAGCGTTGGTTGGG	ref_5092_upstream	17	25	29	21	41	24	32	20	29	16
TTTTATCCGTTTGACC	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGATCGTTGCGGA	ref_5092_upstream	14	11	12	10	17	14	21	9	31	17
GCTTGTCCATTTTGAT	ref_5092_upstream	29	28	20	19	26	18	23	20	24	16
TTTAATTGCATCGTAT	ref_5092_upstream	10	11	4	5	8	7	8	6	4	4
TTGCTAAGGTTAACAA	ref_5092_upstream	27	28	34	31	39	27	32	19	24	12
GGGTGCGGGTGATCTG	ref_5092_upstream	72	103	84	63	70	66	97	75	88	62
TCTCCATCCCGGGTGG	ref_5092_upstream	18	23	16	15	19	15	12	12	21	21
GTTATCAAGGCTGAGG	ref_5092_upstream	9	13	9	5	5	9	12	5	11	4
ATTCGGTCCTCCTATA	ref_5092_upstream	34	35	35	34	32	24	42	27	36	30
ATCCCGATAGTAAGTT	ref_5092_upstream	3	12	5	0	6	8	5	7	13	3
CTTTTAGAGTTTGTTT	ref_5092_upstream	20	24	26	17	36	17	30	16	20	15
TGGGCTTGCCATTATG	ref_5092_upstream	94	142	123	99	136	87	126	101	152	94
CCTGTGATTTCCACAG	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
ACGAACGAGCCTGCCA	ref_5092_upstream	76	76	87	64	82	84	71	84	88	52
CTCTGGTTACACTGAC	ref_5092_upstream	7	15	10	11	13	9	10	8	12	10
TTTTTAGGGCCTCTCT	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
CACTGTATCTTCTTAC	ref_5092_upstream	25	26	33	25	30	29	29	19	49	30
CCGCGCTGCTTATAGT	ref_5092_upstream	3	3	0	1	4	3	4	2	10	8
TGTGCGTTGCGGATTG	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
GTACCACTCTTAACTG	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATAGGCCTGTCA	ref_5092_upstream	16	14	15	19	23	9	26	19	25	12
ATGCCCCTACCCACCA	ref_5092_upstream	42	44	37	46	33	45	46	35	50	43
AATTCTGCACTTATCG	ref_5092_upstream	3	8	6	9	0	0	9	2	5	2
TGCGACGACTTCTACA	ref_5092_upstream	20	40	33	27	40	25	32	29	33	19
GGGATAAAGGCATTGC	ref_5092_upstream	36	36	43	22	26	30	32	21	25	20
CAGACAGAAAATTTTG	ref_5092_upstream	11	38	16	23	29	19	32	13	31	11
CTTGGCTACTCGCATT	ref_5092_upstream	29	36	32	34	41	23	31	22	42	18
TCTGGTACCTAGTGTC	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
CAACAGAGCTAGGTTG	ref_5092_upstream	8	13	15	10	17	12	13	10	10	12
AGAAGCCAAACGGCCT	ref_5092_upstream	4	2	6	4	3	2	2	2	3	2
TACTCGCTCCTGCTTC	ref_5092_upstream	10	10	9	8	10	10	15	4	13	5
CCGGGATTTCTGGGCT	ref_5092_upstream	43	89	36	23	108	38	117	39	113	34
CCGGCCCTGAGTCACC	ref_5092_upstream	0	0	0	0	2	3	3	0	2	1
CTGGGAAACCGGAACC	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACATTATTAATC	ref_5092_upstream	26	27	23	18	28	16	34	21	30	16
TTCGCCTTCAAGAGGT	ref_5092_upstream	50	58	58	52	68	56	62	43	86	61
TAGGTCTTCACCTCGG	ref_5092_upstream	38	54	62	26	56	52	57	43	77	37
GCTGCCTATACAAAAC	ref_5092_upstream	17	19	11	4	21	14	21	17	33	9
TGGACCGGCATAAAAG	ref_5092_upstream	10	15	13	12	7	9	13	2	12	11
CTTACCTAGGGCTTCG	ref_5092_upstream	27	62	28	43	58	31	62	40	68	30
CTTCCGTGTTCCTTTA	ref_5092_upstream	6	10	11	5	7	8	6	8	15	12
CGCAAGCTTACCTTCC	ref_5092_upstream	4	21	11	6	17	8	17	1	22	5
CTGACCGAGCTACCTG	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCAATGCTGATAT	ref_5092_upstream	19	26	14	18	9	22	28	25	29	19
GAGAGCCCCTTCTGTA	ref_5092_upstream	3	7	7	4	3	5	8	5	12	7
AATGCTTCAAGCCGGT	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
CATTCGTTTCATCTGT	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTATCTTATCTCG	ref_5092_upstream	14	24	15	8	18	4	34	13	10	7
GGATGACCGCTCAGAA	ref_5092_upstream	28	31	20	27	21	31	19	33	37	20
GGCAACCCCATTCCGG	ref_5092_upstream	23	29	49	27	46	31	41	33	56	36
ACACTATTTTGACAGT	ref_5092_upstream	14	20	10	13	11	13	20	7	14	18
CTGTTGTATAATGTGG	ref_5092_upstream	63	76	66	61	62	62	86	51	87	51
ACGTTTCGAGGATATA	ref_5092_upstream	12	9	9	10	7	4	8	15	16	4
CACCCTACTTATATGT	ref_5092_upstream	16	25	23	9	25	14	22	16	18	15
TCCTTCTACAGCTTAC	ref_5092_upstream	11	29	25	19	30	31	22	27	30	17
TAAGTTCCTGGTTCCT	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCAACGTGTATAA	ref_5092_upstream	17	15	25	10	19	19	20	18	25	17
CCCTGACGAAGCTCCA	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
CAGCAGCACAGGAACC	ref_5092_upstream	8	5	8	2	4	2	6	1	5	2
TGCACCTTGCTTATGT	ref_5092_upstream	60	68	69	58	96	74	90	47	98	43
AGTTTCTCCGTACATT	ref_5092_upstream	0	0	0	0	0	0	0	0	0	0
CAAAACCGCTTCGACT	ref_5092_upstream	74	117	66	54	82	56	76	54	105	48
GGATCTTAACCTGCTG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
CATGCCCTGGCGCGCA	alt_5783_new	25	37	13	16	26	22	30	8	32	19
TTCGGTAGTTGTTTAT	alt_5783_new	24	29	22	18	46	16	29	15	37	13
CATTCTGTATAGTCCC	alt_5783_new	7	4	1	4	6	1	6	1	5	3
CTGAATAGGTTTTCGT	alt_5783_new	8	22	14	7	14	9	18	6	19	4
TGCCCACGCTCGACTT	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TATGATTTTATGCAAT	alt_5783_new	15	16	8	8	32	4	24	15	24	9
TTGTACAGGTAATTCA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TTACGCTTCCAGTTTC	alt_5783_new	3	14	9	9	6	5	8	11	17	5
CTGGACCTTCCGGAAA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TAAGTGCTATAACGGG	alt_5783_new	20	29	15	18	37	27	44	23	33	17
AGTGCGTTCCCCGGTC	alt_5783_new	3	5	2	0	6	1	2	3	3	2
AGGGCTAAGTCAAGTT	alt_5783_new	0	0	0	0	0	0	0	0	0	0
GGTCATCTTGGCGATT	alt_5783_new	62	135	74	58	105	54	141	64	144	59
GTTAGTGTGCGTGCAG	alt_5783_new	6	19	14	5	17	4	11	5	8	3
CCACATAAGGGGGCAT	alt_5783_new	17	47	23	27	59	16	35	27	57	17
GAGCGGGCTGTCAACC	alt_5783_new	34	57	34	35	51	22	68	25	59	30
CTATACTGTGGATATC	alt_5783_new	14	20	21	17	14	14	31	20	31	12
GCATCATTTCGATCGC	alt_5783_new	8	17	8	6	19	10	20	9	21	17
ATAGCCATACGTCGAA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
CGTTGTCTAGAACAGT	alt_5783_new	0	0	0	0	0	0	0	0	0	0
CGAGCATGGATCGGAG	alt_5783_new	25	44	35	19	52	30	28	26	47	27
CGCTCACGTGAACCAT	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TAGGTATGTTATAACT	alt_5783_new	0	0	0	0	0	0	0	0	0	0
CTCTGAACATCGCGGT	alt_5783_new	9	26	14	9	23	9	22	14	21	22
CTCGTAATTGGTTCTC	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TAGTCAATTGTTGAGT	alt_5783_new	12	19	26	15	37	8	38	16	37	10
CTATCCCTAATATGAT	alt_5783_new	10	18	16	9	30	11	23	10	26	5
TTATTCGATCACCAGT	alt_5783_new	14	17	25	18	26	13	19	25	37	11
CAAGCTGATTTAATAC	alt_5783_new	0	0	0	0	0	0	0	0	0	0
GAAATAGCTGAGCCAC	alt_5783_new	3	12	9	5	14	4	17	4	17	5
TACGTTTCAACCCTCA	alt_5783_new	21	44	23	13	68	16	48	20	45	16
GTTCTGTGACAGAGTA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TCTATCATGATAAGCC	alt_5783_new	11	5	5	2	8	5	8	2	8	7
CCTCATGCGCCTAGAT	alt_5783_new	2	4	0	1	2	1	4	0	9	0
AATCAATTGTCGGTTT	alt_5783_new	24	39	24	18	42	26	73	17	54	14
GACCCTCAGATTTCAG	alt_5783_new	2	2	3	1	4	2	5	0	5	0
GTATTAGTCAGCGGCG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
GACCGTTGTCTTACAG	alt_5783_new	87	200	103	112	226	84	223	78	242	91
GATGAGCCGACACAAT	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TTATTTCTTCTCTCCA	alt_5783_new	24	28	24	23	18	16	25	14	29	15
ACGTAGAACGTCTGTT	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TTTGCAAAACCGTGAT	alt_5783_new	49	91	55	42	96	40	96	38	96	40
CCCCAGAGGAAACTCG	alt_5783_new	18	46	33	28	53	12	62	19	48	19
GCACCCTCACCTCTAG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
AGGAAGAGTTCTCGCG	alt_5783_new	6	19	5	4	14	7	12	6	18	8
GATTATGTAGGATCCC	alt_5783_new	18	14	10	13	17	7	14	2	19	9
TCATATCTGACAACCG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
ACGCGCCTTTTTCTAC	alt_5783_new	15	25	23	10	29	14	28	6	33	18
CAACATCTGCTCGTGA	alt_5783_new	38	93	67	46	116	49	103	50	114	39
ACCGATTCCGTGGGCC	alt_5783_new	38	92	38	38	71	35	78	48	72	27
ACTGTAGGTTTGAAGA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
AGGTTTTTTTGCCGAA	alt_5783_new	11	21	17	14	21	9	21	13	22	6
CTATCTGGTGGTACGG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TCCAAAACACATTAGT	alt_5783_new	4	0	5	2	3	1	4	0	4	4
TGGCCTTGATGGTACT	alt_5783_new	84	152	106	74	160	96	190	74	153	70
CCTGAATCCCATCGGG	alt_5783_new	9	14	9	11	15	8	12	8	14	9
TATGTTAAAGTTGAGC	alt_5783_new	17	45	20	13	39	17	34	17	46	12
ATAATTCCTCCGGCCA	alt_5783_new	1	15	5	11	16	8	14	6	15	6
TTAGAATTTCGATTTC	alt_5783_new	18	41	40	16	48	26	59	26	57	27
CGATACGAAGCGGAAA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TTCACACTGAAATTTC	alt_5783_new	0	0	0	0	0	0	0	0	0	0
ACCTTGTCCCTTTAGT	alt_5783_new	8	33	18	12	27	7	43	17	45	13
AACCACACTTGATGTA	alt_5783_new	11	31	12	15	23	9	28	7	42	10
GTTAGTGACTACTGGC	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TTTTGGAGTGAATAGG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
CGACTGTTGGAGAAAG	alt_5783_new	4	10	8	6	7	0	15	3	19	2
AATGCCGCTCAATTAA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
TTATAACCGCACCTGA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
CGTTTGCCAGGTGGCT	alt_5783_new	41	80	33	25	74	25	101	29	66	22
GGCGGTACCCTAATAG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
GATATGTCTTATGTAC	alt_5783_new	13	43	10	14	32	18	31	12	52	12
GATGTAATCTGGACCT	alt_5783_new	10	17	12	9	9	8	5	9	20	3
GATTGCATTCAAGCGC	alt_5783_new	4	17	5	10	11	11	13	9	15	4
GCTACAATATTATGCA	alt_5783_new	6	16	8	2	16	12	8	10	12	4
CAGTTGATTTTGCTGG	alt_5783_new	0	0	0	0	0	0	0	0	0	0
GTGCTCATTTGTTTAG	alt_5783_new	18	16	17	14	19	16	21	8	27	14
GTCCTTTTAGGCCCAA	alt_5783_new	0	0	0	0	0	0	0	0	0	0
GAATAGCCTCCAACAC	alt_5783_new	49	160	84	69	190	54	169	61	168	53
CGTACCTGTTGCTTTA	alt_5783_new	29	70	39	28	67	23	59	25	73	31
CGCAGTCTCTGCTTGG	alt_5783_new	24	103	33	29	86	23	90	41	107	27
TTTTGTGCGCTGTTTA	alt_5783_new	8	6	5	7	11	1	10	4	5	2
TTTCAAGTATAATAGC	alt_5783_new	18	33	18	16	37	21	51	14	45	11
GCCCATATTACGCCGT	alt_2371_missing	57	78	91	69	103	53	90	71	96	61
TAGGTAGTGACTCATA	alt_2371_missing	81	72	98	106	59	74	90	69	84	65
GTGAACGCTACTAAGT	alt_2371_missing	13	8	9	11	12	13	12	10	10	14
TAACAGCGCGCTTATG	alt_2371_missing	7	8	12	9	3	9	9	10	6	8
CTCAGCCTTGTAGCGT	alt_2371_missing	0	5	2	2	9	0	8	1	7	1
TATTATCACCGTCGCC	alt_2371_missing	25	19	29	30	31	35	27	24	30	26
AGCAGTATGTCGGCTG	alt_2371_missing	212	167	250	198	158	190	178	194	188	182
CTTTAGCGGGCGATCC	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
TTTTAATGCTAAGGGC	alt_2371_missing	58	46	52	47	51	59	50	55	51	39
TCTGAAGGGAGATGTC	alt_2371_missing	15	20	9	16	18	12	17	9	11	13
CTTGTTATTTAACGTA	alt_2371_missing	30	42	45	33	42	36	49	29	27	27
CTTTCTTTACTAACCG	alt_2371_missing	118	112	153	115	119	109	127	125	120	123
TAGCTACTTGCTCGTG	alt_2371_missing	18	25	34	22	17	26	15	19	23	16
CAGCGGGACTTAACTC	alt_2371_missing	29	17	21	14	26	22	19	11	20	17
TGTTTCCAGTCCTTGC	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
TCTTACAGCCATCCGC	alt_2371_missing	2	0	0	0	1	0	0	0	3	0
GTCTGGACCGTTCCCG	alt_2371_missing	66	52	77	60	55	44	53	50	40	55
CCTAAAGATAACTTGA	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
GTCGGCACAGCTGTTC	alt_2371_missing	71	67	73	59	57	62	63	69	74	51
AACGGGATGTACCTGC	alt_2371_missing	18	20	20	23	24	9	22	15	34	15
GAGCCTGCTATCATAG	alt_2371_missing	16	20	21	21	19	31	19	19	11	18
TGCCCTAGCCTCGTTC	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
GTTCAAACCTTGAGAA	alt_2371_missing	210	180	239	230	210	179	188	197	198	195
GCGGCTATGGAGGCGG	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
AGCCCTCTCAATACTC	alt_2371_missing	1	2	2	4	1	4	5	1	3	3
TGGAGCACTGGTACCT	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
TGTGCACGCCCTACAC	alt_2371_missing	37	29	33	26	39	27	30	27	38	31
TTTTCGGCTTCTGGTC	alt_2371_missing	9	6	10	11	6	5	8	4	11	7
TTGCCTTGTTGTGTAG	alt_2371_missing	8	15	14	9	13	9	6	7	16	11
ATAGTGGTCTCGTGGC	alt_2371_missing	21	26	37	29	22	19	39	30	26	24
TGATCGTTCCCGGTTT	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
CGTCAGCGGTGGGGCC	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
TGCTGATTCATGCTTT	alt_2371_missing	55	38	54	36	27	42	45	39	40	34
TATGCGAGCGCGTGCG	alt_2371_missing	47	49	59	42	40	48	53	44	38	40
TCAGCGATCAATGAGA	alt_2371_missing	20	19	23	25	24	21	27	16	26	25
GTAGTTTTTGCTAAAG	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
ATGAGGTCCGCTTGGC	alt_2371_missing	11	10	17	7	9	12	5	10	5	6
CCGTGTATTTAATTGC	alt_2371_missing	17	33	26	27	27	29	52	23	28	27
GCTCAACCTCGGGTCC	alt_2371_missing	41	40	42	44	23	23	36	31	35	44
TAAAAATATGTATCAT	alt_2371_missing	138	108	156	121	111	97	124	101	129	96
TATATTAATGTCTTCT	alt_2371_missing	34	23	41	42	25	44	27	38	30	36
GTGTGGTTAATTGTAA	alt_2371_missing	88	55	85	61	53	62	80	55	56	59
TGTGTATGATGTATAA	alt_2371_missing	41	41	48	42	55	34	48	42	41	26
GCCCATTTTGATTACC	alt_2371_missing	13	11	13	17	13	16	13	21	17	7
GTAGCGGCATTGCCAT	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
CGGTTGACCAGGCATG	alt_2371_missing	65	119	51	40	100	35	116	28	100	43
GATAGTCTATAGGGAC	alt_2371_missing	85	87	117	101	102	84	99	86	104	70
GCCGGCCAGGTTATTG	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
CGTTATTAAACCGAGT	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
TCCTTTCAACACTTAA	alt_2371_missing	6	12	11	9	3	6	9	9	8	6
CCGTTTCATATCGAGC	alt_2371_missing	15	14	13	2	16	9	15	12	8	1
GACCGCATGAGAGAAG	alt_2371_missing	10	10	20	9	8	12	16	16	12	8
TGTTACTTTCTATTCG	alt_2371_missing	29	18	38	21	18	29	24	28	15	22
CCCCAGGCCTGCATTT	alt_2371_missing	47	40	44	36	33	35	43	40	38	22
GGATTGTACACATCTG	alt_2371_missing	44	33	53	61	53	32	42	37	40	33
GGCCACGATTGAGGCT	alt_2371_missing	10	17	10	9	9	4	10	8	11	7
CGGATTACCCTCAAGC	alt_2371_missing	29	37	45	41	33	36	33	37	34	32
ACGAGATTTATAGAGC	alt_2371_missing	52	51	52	45	50	50	53	49	57	39
TTGCTCGAATTTCCGC	alt_2371_missing	14	13	15	12	14	20	10	6	16	15
TTACCGTCCTGCCTGT	alt_2371_missing	36	36	53	49	53	52	41	43	46	39
TATCTCTTCGAGTCGT	alt_2371_missing	9	14	17	6	7	5	13	11	10	8
AAGCAATTCGAGGCGG	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
CTCCCCTGATTCTGAT	alt_2371_missing	16	149	16	27	179	15	203	12	184	15
TCAAAACAATCTCGAT	alt_2371_missing	55	33	60	40	44	36	46	38	51	38
TTTATGCGGTGCGCAC	alt_2371_missing	49	56	42	40	49	30	53	24	59	49
TATCGTAGCTGGTCAC	alt_2371_missing	6	1	1	2	2	3	4	5	4	1
GTGTTGGAGCATTAAG	alt_2371_missing	34	28	37	43	20	25	45	24	37	17
AATCCCTCGAATAACG	alt_2371_missing	50	44	64	56	34	63	35	60	55	51
TACCGTATAGAGTGGC	alt_2371_missing	29	42	44	39	32	26	42	21	35	20
ATGAGGAACGCGCCGC	alt_2371_missing	22	9	27	15	12	18	13	16	23	16
AATGATAAGTCTTTAT	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
AAGGTTCTTTTAATTA	alt_2371_missing	49	38	62	57	44	39	58	52	40	60
TGCCTCATGCCCTTAT	alt_2371_missing	271	270	308	239	281	261	270	275	285	250
AATCTAAACCTATTTT	alt_2371_missing	72	43	69	64	60	61	63	65	52	38
GCTTGAACGATCAAGT	alt_2371_missing	16	32	32	23	26	16	27	14	35	22
CCACCAATCCGCTGTC	alt_2371_missing	23	54	34	27	36	18	32	37	46	20
GCATATTTTGTTTCTA	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
TTTCGCGTTAACTTCC	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTAAAGTCGCTA	alt_2371_missing	139	119	134	129	124	104	132	124	110	88
TATCCCTCTATCAATT	alt_2371_missing	37	33	41	30	24	44	32	32	52	22
CTCCGTTCAGCTCCAT	alt_2371_missing	197	207	231	186	177	185	230	155	213	186
TGTGTGAAATTCCGCG	alt_2371_missing	33	20	17	25	29	29	21	18	24	28
CAGTCTCACGGGTTCT	alt_2371_missing	17	18	29	15	14	12	17	11	17	11
CACTCCGAGGTGTTTT	alt_2371_missing	7	4	9	8	8	7	1	12	15	3
TGGGCTGCGAATCCAG	alt_2371_missing	29	22	31	23	18	23	23	12	30	20
AAATCCACGTATGCTA	alt_2371_missing	0	0	0	0	0	0	0	0	0	0
AGCCGTATAGCATTGG	alt_2371_missing	55	66	86	50	64	64	66	57	89	66
TAAGCCAGCGACCTGG	alt_2371_missing	19	14	14	6	7	11	26	5	15	8
GTGTGCTTTGAGTCGG	alt_2371_missing	33	29	37	33	31	21	24	15	31	24
GTCCCTCGGGGGAAAA	alt_2371_missing	29	15	40	29	24	25	33	19	23	39
TAGTTAACTATGAAGG	alt_2371_missing	33	28	54	38	24	24	36	28	30	38
TCCTCTGTGTCTGTAT	alt_2371_missing	15	21	22	6	24	9	18	8	18	8
ATTCGTCTATTCCCAC	alt_2371_missing	76	89	93	93	78	94	98	69	104	77
GTTTCACACTTACTCG	alt_2371_missing	5	7	5	7	4	5	14	7	6	8
TTCAAGTGGGCTTTCT	ref_565_fdr	28	34	36	42	31	35	51	41	42	43
CAGGCTGCTATGTTCA	ref_565_fdr	31	42	35	30	37	30	37	31	46	48
CTACACAGCACACTAT	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
TATTACGCGGGACAAA	ref_565_fdr	23	32	23	30	20	18	27	30	20	22
GATTATACCTTCGCCG	ref_565_fdr	13	31	15	25	21	7	13	18	22	19
GTATTGTTGCGTTTGC	ref_565_fdr	13	17	13	12	15	16	12	7	15	10
TGGGTTTGGGTGTTGT	ref_565_fdr	33	55	41	27	63	33	55	29	79	23
GCATGCCTTCCACCGT	ref_565_fdr	37	57	47	56	48	45	53	40	56	32
CGGGTAATCAAGAGGT	ref_565_fdr	54	61	66	48	58	49	42	58	58	49
CTTAGTGCGGCTCGTG	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
AAGATTAACGCATTAT	ref_565_fdr	90	87	95	88	89	79	87	70	88	70
CTACGCCATTGATACG	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCCAATGTATGCA	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTAGATCTCGTCC	ref_565_fdr	31	56	48	42	45	36	67	21	59	21
CGTGGCTAATCAGCTG	ref_565_fdr	5	16	13	12	15	5	18	6	5	8
CTTAATTATCTAACTC	ref_565_fdr	15	15	24	21	15	18	16	16	25	14
AACTCTGTCCTAGGCT	ref_565_fdr	15	20	37	10	44	24	29	29	26	23
CTATTCCATTATGCCT	ref_565_fdr	40	49	43	48	40	41	36	30	42	28
CTAGAAGTTTAAGGCT	ref_565_fdr	52	83	60	40	62	48	84	51	85	43
GTCTCGCAGGCTTAAG	ref_565_fdr	12	9	15	27	15	8	22	6	16	11
GTGAGATAGGTGGGGC	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTATTCTCTAGTG	ref_565_fdr	54	57	46	40	57	47	63	55	66	47
TGAGAACGAGCGTCAT	ref_565_fdr	140	169	135	144	182	141	199	128	190	140
CTATGAACTTTCAGAA	ref_565_fdr	64	87	92	70	98	54	96	66	126	69
GTAGAAGCACTTTCTT	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
CTATAGGAACGTGGAT	ref_565_fdr	108	108	110	76	105	94	127	84	128	81
TATAGCGTCCTACTTT	ref_565_fdr	22	31	25	30	37	19	40	26	39	20
CCTATGTTTGTAAAGA	ref_565_fdr	42	84	68	48	92	37	95	46	92	48
TGAAAACAACGTCATC	ref_565_fdr	20	23	16	13	16	11	23	14	15	4
TGATTGGTGAATTGGA	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
CGGCATAGTCGGTCTA	ref_565_fdr	55	59	62	57	85	65	67	41	84	51
TGTATACTCATAAGAT	ref_565_fdr	30	26	23	22	32	22	42	20	52	26
GACCTCTCCAATCAGC	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTCGGCGGTCGAC	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
AGCCCGTTGCCTACGA	ref_565_fdr	68	87	68	66	103	52	119	60	90	42
TGTAACTGGGTCTCTT	ref_565_fdr	31	35	56	37	38	39	55	54	32	33
GTCCACAGTGGTGCCC	ref_565_fdr	18	19	21	11	15	16	23	17	18	10
CACCCACCTTTCCTCC	ref_565_fdr	21	30	35	26	18	22	22	22	26	12
ATACTCAAAGGTTTAG	ref_565_fdr	16	22	17	17	15	17	13	14	32	20
ATCTGGCTTTTCGGCA	ref_565_fdr	23	29	48	31	46	25	37	38	28	24
GGTAAATACATTTTCG	ref_565_fdr	24	25	26	19	21	25	20	24	25	12
CATTATTGACAGTCCT	ref_565_fdr	50	49	58	51	68	41	57	42	70	34
TCCGGGAAAGCATCTG	ref_565_fdr	20	21	24	23	32	18	27	39	34	28
AGTCCTACGCTTCCGG	ref_565_fdr	26	15	25	32	22	17	23	16	29	22
CACTTTTCCACATAAT	ref_565_fdr	0	0	0	0	0	0	0	0	0	0
TCACAGTCTTCATAAC	alt_1433_RC	43	47	41	40	51	27	45	39	42	31
TGTACTTAGGTTTCTG	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
TGCTATGCCGGGTCGG	alt_1433_RC	89	114	139	96	85	98	105	87	109	117
TCACCCAAACTATTAG	alt_1433_RC	114	100	100	87	123	108	150	79	123	103
GGTGCACTGATATGGA	alt_1433_RC	161	217	271	165	190	181	221	189	212	143
GGCGGTAGAGTATCAT	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
GGGATTTGGGTGTTTT	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
TGAGTATACTCATGGT	alt_1433_RC	4	0	4	5	2	4	6	3	4	0
CTTTTGCCGGGTTGGG	alt_1433_RC	4	7	3	4	2	6	4	3	4	0
TAACAGTTAAACGCTT	alt_1433_RC	90	99	86	91	114	94	88	98	112	83
GGATCATGTTCAACTT	ref_1433_RC	22	20	27	21	23	22	20	15	25	18
TGTATGTTTTTATGGA	alt_1433_RC	51	53	52	26	35	25	54	37	67	29
TTTCTTGGCCCACGGG	alt_1433_RC	14	9	16	15	14	12	6	7	19	7
GTCCTTACCGCGCTGG	ref_1433_RC	254	260	298	211	305	211	287	222	309	194
ATACCTATATCCTGCC	ref_1433_RC	115	90	113	119	121	98	102	105	126	100
ATCTTGCTCTTGTCGA	alt_1433_RC	88	91	92	76	104	65	89	71	81	65
CTGAACATTGGTATAA	alt_1433_RC	153	165	177	138	168	148	176	136	176	140
TTATCTTCGTTCTTTA	alt_1433_RC	7	8	10	10	10	7	5	3	8	10
TGGCATCTGGCCGCCA	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CCGCTTGGTCAGCTCG	alt_1433_RC	15	14	12	10	21	13	9	16	15	6
CTCGCTAAGTTCGTCT	alt_1433_RC	15	32	25	19	24	15	32	15	27	19
TGAATTCACATACACC	alt_1433_RC	26	40	41	30	35	23	34	34	46	34
TAGGATCTGTCTACCA	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CTCCAAATCATAGCAT	alt_1433_RC	54	92	82	60	61	56	79	53	65	53
TGAAGACATGCCAGGG	alt_1433_RC	14	14	19	36	18	22	31	21	27	28
GGGGATCCCTGGTTGC	alt_1433_RC	15	11	22	12	18	20	22	14	14	17
TACGGAGTACTGCCAT	alt_1433_RC	73	90	82	86	84	57	91	69	79	64
ACGAGGCGATGTACGA	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
GGCTCGCTACTTATAG	alt_1433_RC	63	93	81	69	85	71	106	61	124	58
GTGACGTCGATGCTGG	alt_1433_RC	120	84	140	95	102	104	123	89	144	97
TCAGCTAATGCAACTT	alt_1433_RC	11	10	14	16	6	2	15	11	9	11
CTGTATGTGTTAATCC	alt_1433_RC	4	9	8	6	6	3	8	4	3	2
AATCAAACTACATGCC	alt_1433_RC	8	8	6	6	8	11	8	14	9	3
GTTAAAGCGCCTTTCG	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CTTGTAATTTTCGTTT	ref_1433_RC	55	45	49	52	36	47	42	40	42	47
TACGCTCTGTAACTAC	alt_1433_RC	145	226	208	184	263	149	223	146	224	147
CGCATAACTGTTCAAG	alt_1433_RC	71	67	60	66	54	56	71	45	61	48
GCAGGACTCACAGGTT	alt_1433_RC	13	26	36	21	14	27	25	23	27	23
TCCTAGCGTTTTAGTT	alt_1433_RC	28	46	51	26	42	39	57	31	45	26
CTATTCGTTAGGGCGC	alt_1433_RC	20	25	26	25	19	26	34	20	34	19
TCCCACAGGAGCCCCC	alt_1433_RC	38	39	63	42	51	52	60	64	60	34
ATTTGCCTTATATATG	alt_1433_RC	13	11	15	17	26	19	11	9	19	11
TTGCGTGCTGGCTTTC	alt_1433_RC	35	43	33	25	29	25	32	30	31	29
TAGCCATTCTAAATCA	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CTACCTAAAGTGATGG	alt_1433_RC	83	103	114	70	84	79	85	82	95	67
TCGATCCGCGCCATGG	alt_1433_RC	49	46	69	50	47	67	42	48	54	53
GGTTCAGGACTGTTAT	alt_1433_RC	7	3	6	5	3	2	4	1	1	4
GAGACATGATTTACGT	alt_1433_RC	47	27	68	42	45	42	46	35	49	35
TTCGCAGACTCTTTTT	alt_1433_RC	3	3	7	2	3	6	6	6	5	6
TGAACTTCTTTCCGAG	alt_1433_RC	16	25	18	15	17	14	19	22	20	14
AGACGTTTTATTTACA	alt_1433_RC	48	70	68	61	81	58	85	70	93	62
TACGGATGCCTCTTCT	alt_1433_RC	77	48	62	70	70	47	54	43	88	53
GAAATGTATGAAGGCT	alt_1433_RC	6	30	13	13	25	12	22	10	19	11
ATCGGGGATGGAAATT	alt_1433_RC	136	146	125	131	137	120	158	124	113	112
TCCACGTGGCACTTAT	alt_1433_RC	82	123	123	96	106	72	99	75	110	84
TTAGAGATTAAGGGGC	alt_1433_RC	19	22	14	2	17	16	17	16	26	15
ATACGGCCCCCAAGGT	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CACTACGCTCTTAGCG	alt_1433_RC	0	0	0	1	0	0	1	0	1	0
AAGGGTCAAGATCGTT	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CCCTTTGGACAGACCC	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
TTTGCATGACGCCTGT	alt_1433_RC	95	92	106	95	99	108	123	80	114	83
GTGGCTGGGCCTCAGG	alt_1433_RC	56	49	66	54	58	49	62	39	55	37
TAGGTTAGATAGGGCT	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
GCCACGCCTATACATC	alt_1433_RC	19	29	22	26	31	19	37	16	32	21
CGGAGGGCAGGACAGT	alt_1433_RC	17	17	16	19	19	15	21	15	11	12
TGAATCTCATATGACC	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CGTTCAGTGTAGTCTA	alt_1433_RC	3	8	4	3	2	5	2	7	5	8
AACGGATTCCCTCCTT	alt_1433_RC	2	6	3	7	3	4	3	4	7	3
CGTCTTCGTCGACCGG	alt_1433_RC	20	23	30	29	11	22	25	18	12	21
CTGGATGTTGTCGATT	alt_1433_RC	12	22	21	19	30	7	18	13	18	19
ACTCACTGACTAAATC	alt_1433_RC	13	37	22	21	43	7	44	11	45	15
CAAAGGCTTTCGTTCC	alt_1433_RC	64	80	75	91	98	76	83	79	86	65
GAGTATGCGTTTTCGT	alt_1433_RC	9	12	12	5	7	7	6	8	7	7
CTCGACCCTTGTTTCC	alt_1433_RC	11	19	21	16	17	21	22	13	13	15
CATCACGTCGAGTACC	alt_1433_RC	23	23	25	22	22	18	32	17	20	21
CCTGTCTGTCTATGTC	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
TTCTCACCGTGTTGAG	alt_1433_RC	29	38	37	35	49	28	42	39	40	22
GTGTTACCCTTACGGA	alt_1433_RC	1	1	3	3	4	2	0	1	3	4
ATGCATCTGTCCCAGG	alt_1433_RC	15	17	20	11	13	15	18	7	18	10
CGCCACGGCCTTTGTA	alt_1433_RC	89	129	90	85	110	80	121	95	154	61
AGTCCGGGAGGGCTAA	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
ACAATTTTTCTTGCTT	alt_1433_RC	0	1	3	0	2	0	2	1	1	2
CTAGAGAAACTGGGGT	alt_1433_RC	16	20	26	27	23	16	20	30	23	11
AAACTGGACGGTCATA	alt_1433_RC	48	76	76	58	62	55	55	46	60	47
TGAAAGGCCGCCCACG	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
CAGTCCGTTTTCGGCT	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGGCATCATCGG	alt_1433_RC	6	6	4	8	2	3	4	7	7	1
ATGAGTACTTGTTATA	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
TCAAAGCGTCTCAATA	alt_1433_RC	46	68	60	57	55	46	47	44	65	52
TTCAGTACCCAATTCT	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
TACCTACCACTAAAAA	alt_1433_RC	0	0	0	0	0	0	0	0	0	0
GACCGCTACATTTGGA	alt_1433_RC	4	8	16	7	16	9	17	6	19	7
CTCACCATGGTCTCGA	alt_6018_new	26	38	41	38	43	38	35	18	39	28
TGACGCTCCCAACCAA	alt_6018_new	1	2	3	2	7	2	11	6	11	2
ACTCTCGTGCCAGCCC	alt_6018_new	7	10	10	7	8	12	18	8	14	8
GGGCAACTAGACATAT	alt_6018_new	0	0	0	0	0	0	0	0	0	0
ACACCTGATACGGGTG	alt_6018_new	2	1	2	0	2	1	3	2	4	0
TTCGAGGAGCCCGGAT	alt_6018_new	13	10	5	5	5	6	3	7	13	5
TAGGTTACTTTGGGTC	alt_6018_new	0	0	0	0	0	0	0	0	0	0
CATGTTGGAGCATTTA	alt_6018_new	0	0	0	0	0	0	0	0	0	0
TGAGTACCGTTTGGGA	alt_6018_new	3	8	6	5	2	5	5	0	1	3
AATCAATGAATATCCC	alt_6018_new	3	8	8	5	9	7	11	10	16	10
TGTTGACCGGAGTAAA	alt_6018_new	0	0	0	0	0	0	0	0	0	0
GTAAGCGCACGATTAG	alt_6018_new	10	10	1	2	9	3	8	5	4	3
ACTCCATGGTCTACGT	alt_6018_new	0	0	0	0	0	0	0	0	0	0
GCGTCTAAATCGATAA	alt_6018_new	38	36	46	30	50	34	52	34	57	34
TGGATTTGCCTTAGCC	alt_6018_new	41	50	33	38	52	42	54	34	55	30
AGCCACGAAGGTTTAT	alt_6018_new	0	0	0	0	0	0	0	0	0	0
CCTTCGCTTCCTCCCG	alt_6018_new	0	0	0	0	0	0	0	0	0	0
CTATACAGCAACTAAG	alt_6018_new	15	32	10	20	38	23	32	20	24	12
TAGTGCGGCATACGAG	alt_6018_new	1	2	3	1	1	2	0	4	1	3
TGCCTTAGACTTTCTT	alt_6018_new	5	15	5	5	10	7	10	2	15	2
GGCATGAATTGCGCGT	alt_6018_new	0	0	0	0	0	0	0	0	0	0
ATACCAATATTTTTAT	alt_6018_new	0	0	0	0	0	0	0	0	0	0
CGAGCCTGTTTGATTA	alt_6018_new	3	11	5	2	13	3	6	4	10	2
CCAGATATGAACGATC	alt_6018_new	20	15	10	10	23	5	14	10	13	4
TATCACCTGCGGATGG	alt_6018_new	0	0	0	0	0	0	0	0	0	0
GATTAGCAGGTGTCTT	alt_6018_new	52	74	89	57	91	63	112	34	105	75
AGACACCGGTCACTTC	alt_6018_new	2	11	5	0	13	0	12	2	2	3
GAACCACTCGGTCCAC	alt_6018_new	14	19	10	8	13	15	14	10	15	9
CTTTTCCCAGGTTTTC	alt_6018_new	22	18	11	15	16	15	18	15	16	9
TTGGTGGGCATCAGAT	alt_6018_new	2	9	8	3	6	3	7	3	7	3
TGCCGTTATAGACAGC	alt_6018_new	0	0	0	0	0	0	0	0	0	0
GCAGTTAAATGTAGTC	alt_6018_new	16	18	8	15	17	11	17	11	24	13
GATCTTAATGAGACAT	alt_6018_new	10	9	13	17	20	7	22	11	10	9
ACAGTAGAACAATACT	alt_6018_new	0	0	0	0	0	0	0	0	0	0
ATTTTCTTGCAGCGTG	alt_6018_new	6	7	8	10	8	10	12	10	10	7
GATCACTCACGAATAT	alt_6018_new	19	11	25	14	14	11	13	13	10	14
ACTAATCATGTTATAG	alt_6018_new	67	93	77	76	119	52	104	55	116	52
TCCACTCAGTTGGTTC	alt_6018_new	0	0	0	0	0	0	0	0	0	0
GAGACGTGGGATGAAT	alt_6018_new	59	80	52	44	60	37	74	46	88	50
AGGACGCATTGTATAA	alt_6018_new	3	11	4	12	4	7	8	7	13	7
CTGCTGCCTTCAGGGA	alt_6018_new	19	20	29	18	36	12	22	35	28	15
TTCCTGACTCGTTATT	alt_6018_new	11	28	11	4	37	9	19	8	23	3
CATTTAACCGGTCATA	alt_6018_new	0	0	0	0	0	0	0	0	0	0
ATTCGGAAGTCTCTCA	alt_6018_new	0	0	0	0	0	0	0	0	0	0
ACCCACTAATGTGCGT	alt_6018_new	4	10	5	5	3	3	5	7	6	2
ATCAAATTATATACGT	alt_6018_new	12	11	6	5	7	9	11	8	13	4
TTTCACCGATTCCATT	alt_6018_new	12	3	4	3	7	2	7	5	8	6
GATTAGGTAATGTGAC	alt_6018_new	4	14	11	9	20	16	12	15	14	12
GTTGGTGAGGACGTGG	alt_6018_new	30	36	29	29	52	36	56	38	48	22
AATGAGTAGACATAGT	alt_6018_new	35	42	35	36	44	33	63	36	58	38
GACGAAATAGGAGTTC	alt_6018_new	22	30	18	10	17	13	33	22	17	10
TATTGCTAAAAACGTA	alt_6018_new	0	0	0	0	0	0	0	0	0	0
TCTATTAACGGTCGTT	alt_6018_new	6	10	4	7	9	7	4	4	4	7
CTCAGCGGCTTTCGGT	alt_6018_new	12	8	13	8	11	5	16	3	8	5
CAGTAAAAAGTTCCAA	ref_6018_new	13	26	23	20	34	18	25	23	30	11
GCCGTTTGGTCCTGAT	alt_6018_new	14	43	32	20	27	20	46	18	43	18
CCAACCTAGGTCGTGC	alt_6018_new	0	0	0	0	0	0	0	0	0	0
CAGCCCAGTCTCGTCG	alt_6018_new	0	0	0	0	0	0	0	0	0	0
CGGCTATACTCCACTC	alt_3878_fdr	18	19	17	6	21	11	19	8	14	12
TTAGGCTTTTTTGTGT	alt_3878_fdr	92	128	117	123	148	149	134	96	147	66
AATTTTGGGAGGGTCA	alt_3878_fdr	6	6	2	5	4	3	7	2	4	4
TGGGAGATCGGGTCTT	alt_3878_fdr	52	47	57	49	42	44	46	33	40	32
GAGACCTACGAGTAGC	alt_3878_fdr	12	8	11	22	14	26	25	17	19	17
TGGCGCCGCTCTTGAC	alt_3878_fdr	40	34	51	33	43	26	38	33	47	25
GACGGGATGTTCTTCC	alt_3878_fdr	37	28	62	25	28	28	26	22	27	28
GGTGAATTATCACACG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACACATGCATTGCTGC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CTACGCGGCCGAAAGG	alt_3878_fdr	19	22	30	15	30	27	31	21	21	26
ATTGAGGGGCATAGGG	alt_3878_fdr	9	15	18	10	11	11	12	8	13	8
TCTCGTTTTTCGGAGC	alt_3878_fdr	14	14	15	12	28	18	21	13	18	10
CATACCCATACGTCGC	alt_3878_fdr	21	26	21	17	24	13	34	11	45	11
ACGATTGGTTTGCCTC	alt_3878_fdr	10	10	12	10	9	6	11	14	17	3
ATTCTTTTTCCCGGCT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGACCTTCTCTCG	alt_3878_fdr	15	19	22	22	10	12	16	8	12	15
AAGGTCGCGTGATGGG	alt_3878_fdr	125	117	135	117	109	107	117	141	133	99
CGCATAGTTATTTTTA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ATTCATCGACCGTTTC	alt_3878_fdr	5	7	2	4	2	4	5	3	10	7
GGTTTTGTCCTCCACC	alt_3878_fdr	7	1	5	4	0	4	1	3	5	2
ATATTAACATGTCACG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GTACCCCACACTTCGG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TGCAAAGCAACTCCGC	alt_3878_fdr	17	12	13	11	22	24	12	6	19	10
TTGGGTAAAGGACATG	alt_3878_fdr	29	26	27	18	27	21	25	21	35	12
GCGTATGCAAGCTTAT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCACGGGAGCCTA	alt_3878_fdr	11	7	7	8	11	8	13	9	21	3
GGCTGATCGATCATGT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ATACTGTAAAAGGTTT	alt_3878_fdr	68	71	74	75	84	67	86	57	80	49
TGTTACTGTGTTTCGA	alt_3878_fdr	9	9	8	11	19	11	9	14	16	12
TCGAACGTCTTTAGTA	alt_3878_fdr	50	58	42	46	50	35	47	26	54	32
ACTCCTCTGGCCGTTG	alt_3878_fdr	0	32	4	0	27	7	38	1	44	2
TGCCTTAGCTCCAAAT	alt_3878_fdr	44	55	65	45	76	44	73	56	64	50
AGATGTTTCATCCGTT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTCGAGCAACTAC	alt_3878_fdr	33	40	35	49	39	34	36	46	48	43
AAAATTTACATTTGAG	alt_3878_fdr	12	13	17	15	24	11	11	9	12	12
CTAGGCCTTTACGCCG	alt_3878_fdr	4	4	9	14	7	8	6	9	4	6
CTTTATTCTCCTGGTG	alt_3878_fdr	86	87	91	59	61	76	91	69	68	56
GAATCGAACTGTTAGT	alt_3878_fdr	27	65	32	30	67	22	70	36	64	30
TCTAGCAGTACGCCAG	alt_3878_fdr	9	16	18	21	12	9	20	13	24	10
GTCCTTTGGTCAGGGA	alt_3878_fdr	37	52	57	44	40	51	64	40	60	39
CCGCTGAGATGGTCAC	alt_3878_fdr	22	19	22	18	13	23	21	12	11	22
TACTTCTGTTTGCATG	alt_3878_fdr	6	12	11	10	17	10	10	6	16	7
TTTCCATCTTGCCTCC	alt_3878_fdr	53	59	44	45	53	48	70	45	70	30
ACTGTCACGAGTGTCG	alt_3878_fdr	17	26	17	17	26	12	17	12	20	15
GCTTAGTAGGCGTACC	alt_3878_fdr	6	5	10	3	8	2	7	5	11	7
ATCGTCTTATTAAGAC	alt_3878_fdr	12	17	7	12	13	10	14	8	17	15
CTGCAGCGTCAATCGC	alt_3878_fdr	47	60	61	41	48	60	45	41	82	31
GCCCTTGAATATTTTT	alt_3878_fdr	1	8	3	4	4	4	2	5	7	3
GTGTTTTATGCCACAC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TAACTGGCTGGCATAA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTGCAGTGTGTCG	alt_3878_fdr	3	3	3	4	6	2	3	3	3	4
TCTCCCAAATGTGTCA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATGATCTGGAGG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCCATTGCTTTAA	alt_3878_fdr	12	17	14	11	8	16	11	11	12	17
CCAGGTCATCGGGGCT	alt_3878_fdr	268	308	348	282	325	294	370	253	346	234
TCAGCCCCGGAGTCTA	alt_3878_fdr	21	43	43	25	39	27	42	32	41	25
TACGAATACGATCTGG	alt_3878_fdr	46	26	48	36	25	26	33	28	33	38
TCTTGTGTTTTATTCA	alt_3878_fdr	10	10	10	13	13	12	9	11	14	8
TCGCAGTTATGCTGGC	alt_3878_fdr	5	11	9	8	10	5	8	3	11	6
AATGCGTTGGGTTACC	alt_3878_fdr	31	21	29	38	36	30	32	43	29	25
GTGGAGTCCCGTTAGG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CACGTTTTTTCCCCGG	alt_3878_fdr	5	8	3	3	12	7	7	3	15	7
ATCGAACAGAGTGCGG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GGTCTCGACTGTTAGT	alt_3878_fdr	9	7	10	10	12	5	12	15	13	3
TGGTTCGTTTCCCACC	alt_3878_fdr	58	74	77	69	77	58	74	58	73	63
AGCGGGCACGGGTGGG	alt_3878_fdr	37	37	40	40	39	41	33	32	61	34
ATTTTATGCTCGGCGG	alt_3878_fdr	2	3	5	2	6	3	2	3	9	2
TCCGCGTTCGATTGAC	alt_3878_fdr	33	34	48	37	29	39	41	36	40	38
CATTTGATGAATGCTC	alt_3878_fdr	30	51	52	42	37	45	59	45	48	45
CTTTCATACAGCAGGG	alt_3878_fdr	4	3	15	4	9	6	9	11	10	4
TTTGGCGCGACGTTTT	alt_3878_fdr	244	224	268	254	250	244	252	191	284	205
CTGACAGGAGTTTGTC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCGTTACTGGCAG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ATTACGGCCTTCACTA	alt_3878_fdr	9	7	5	14	2	7	5	2	12	3
TGTATCCTTATAAAGT	alt_3878_fdr	0	2	2	2	0	1	3	4	2	2
CAGGATAATCCTATTA	alt_3878_fdr	56	59	71	69	64	62	90	51	67	38
GTGGGATAGTTCAATT	alt_3878_fdr	33	37	58	39	24	32	33	28	45	27
GGTATCTCTCCTTCTA	alt_3878_fdr	53	39	69	46	34	40	55	32	39	43
CTTGAAAAAGGATCTC	alt_3878_fdr	20	54	42	42	29	32	37	38	63	32
CAGTGACTTATAGATT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCACATTCAAACTCTC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GATTCCTGCGTTCATT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GATCTAACTTAAGTCA	alt_3878_fdr	11	7	17	10	17	8	13	10	14	10
AAAGCATATTACGCTA	alt_3878_fdr	10	10	17	3	13	9	6	13	6	2
AGGTGGTTTCTGTCTT	alt_3878_fdr	30	34	36	45	25	19	35	25	42	22
TAAGGCAGGATACCAT	alt_3878_fdr	5	0	1	1	0	1	2	2	0	0
CTGAAAAGCGGGATTA	alt_3878_fdr	20	31	26	16	14	15	33	19	21	17
GTCTGAGCACGGTTGC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TGCACGATTTCATTAG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CACGTCGTCGTTTCTG	alt_3878_fdr	21	41	32	20	38	27	38	21	56	22
TTAGCCTAGCCAGAAC	alt_3878_fdr	24	33	35	29	34	26	37	19	49	10
CGTACACGATCCAGCT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
AGATTAGCATGTCAAT	alt_3878_fdr	51	37	49	55	57	40	29	40	49	24
GTAGGTCAATAGGAAC	alt_3878_fdr	35	55	39	37	56	32	40	30	60	25
TTGGCATCACGGGCGC	alt_3878_fdr	7	15	17	13	17	13	12	14	14	13
ATGCTGATTATTTTCA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GAGATTTGTTAGTCCT	alt_3878_fdr	5	11	11	5	4	6	10	8	7	10
CAGTCATTGGCGTAGA	alt_3878_fdr	6	6	3	3	4	4	1	4	4	1
TGTAAGGGTTGGGTTC	alt_3878_fdr	86	107	110	102	106	102	121	89	123	76
TGTTTTATAAATACGT	alt_3878_fdr	11	43	41	33	42	26	30	25	24	21
AAGTCACAGAGTAATC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGTAGAACTTTGG	alt_3878_fdr	18	24	18	21	38	19	30	14	31	14
ATCGATCTCTGTTGGA	alt_3878_fdr	0	1	0	1	0	0	2	0	1	0
AACCTGGCAGCCCTAA	alt_3878_fdr	37	37	44	33	51	29	51	23	30	41
AGGTTACGCCGCTATT	alt_3878_fdr	13	23	22	9	29	15	16	16	18	16
ATCTGGCCAGGTAGTA	alt_3878_fdr	173	208	190	160	180	163	208	148	225	140
TCTGTGTTAGTTCATC	alt_3878_fdr	8	17	11	5	8	7	12	6	12	8
TTATCGTCTCAATTCT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TAATTGCGTCTTTCGA	alt_3878_fdr	66	79	80	56	69	52	81	70	66	56
ATATCCGCAATACTTT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGCGGGGTTCTGC	alt_3878_fdr	2	20	7	5	27	1	19	3	29	6
GAGGTATGCCCGCGTC	alt_3878_fdr	20	13	16	22	10	8	10	12	10	16
TGCACGCCTGATTGGC	alt_3878_fdr	18	21	31	34	27	24	25	15	27	21
GTCTTTATTCTGGTGA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGTGGACCTCACA	alt_3878_fdr	10	14	14	22	10	7	6	8	16	8
ACTAAAACCTATCCCA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCCGATATATCCT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCCTCGCTATAAA	alt_3878_fdr	1	14	7	7	9	6	5	3	17	5
AAGGCAGTATTATCAG	alt_3878_fdr	20	24	24	17	13	24	16	10	30	14
TACTCGATTTCTATTC	alt_3878_fdr	14	16	24	12	11	16	8	16	19	13
CATCTTCGGATCCTAT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTTTTGTAGTGAA	alt_3878_fdr	30	61	41	16	58	38	62	41	62	39
TGCGAGTCCTTCTATC	alt_3878_fdr	34	42	36	30	31	36	51	41	53	40
CGCTGCCCTTTTCATA	alt_3878_fdr	18	16	18	26	11	13	14	11	16	14
CCACATTCAAACTCCT	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CACTCTCGCGGCCTTG	alt_3878_fdr	18	17	14	11	26	18	16	7	26	11
GTCTTTCCGTTTCGCG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGGTGGATTTTCT	alt_3878_fdr	5	6	6	5	7	3	6	7	16	1
TATGGCTGGAGTCTAG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACGCCTGCACGCGCAT	alt_3878_fdr	80	127	119	92	106	89	93	86	98	78
CGTATCTTATGCTGAT	alt_3878_fdr	27	31	41	30	29	39	41	25	48	18
ACACCTTTCATTTGTC	alt_3878_fdr	42	35	51	33	47	28	27	34	29	35
AGTATCTAGTGCTACC	alt_3878_fdr	46	60	55	47	64	53	55	40	64	43
TTTATATTCGCTGAAT	alt_3878_fdr	12	8	7	5	5	9	7	7	8	13
AAGTGACTTGGTGAGC	alt_3878_fdr	17	9	18	9	7	10	4	7	5	19
TAGCATTCTCCAATTG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTGTAAGCGGTGC	alt_3878_fdr	8	20	4	2	12	3	19	7	19	3
TCTCCTCTCTAGACTG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GTAATCGTGAGTGTTT	alt_3878_fdr	2	9	8	10	10	8	21	8	12	4
TTGCCAGGGACGCTTT	alt_3878_fdr	7	14	8	4	13	7	10	5	12	4
GGCGGGCAACCAGACG	alt_3878_fdr	46	28	44	38	38	41	65	38	62	49
CTCCCGTTCTTCTAAT	alt_3878_fdr	11	25	11	7	20	19	21	11	31	12
CAAAAATACCCGACCG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
TCCAATGGCTGGCGAA	alt_3878_fdr	30	36	29	30	24	38	30	32	23	39
ATGACTTACTGCGTGC	alt_3878_fdr	18	26	28	17	40	20	43	20	35	28
TCTCCCGTCAGACCAT	alt_3878_fdr	4	18	3	5	15	5	23	5	22	6
ATAAATTGGTTTACTG	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAACGATTTACAC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTCTCACTTCTTT	alt_3878_fdr	35	41	50	42	29	29	37	41	29	29
TGATTAGTGATCCTCG	alt_3878_fdr	41	40	48	25	40	31	38	18	38	29
GGAATGGGCTTCCGCG	alt_3878_fdr	53	43	40	40	52	37	49	36	78	35
CGCACCCATCTCGCAT	alt_3878_fdr	7	13	19	10	13	14	19	11	14	11
AGCCATTCAGAAAGAA	alt_3878_fdr	31	35	35	24	37	27	34	21	37	19
CGCTGGATCTTGTTAC	alt_3878_fdr	21	19	29	16	22	8	39	26	26	14
ATAACGGGGCTTACCA	alt_3878_fdr	3	3	8	5	4	5	5	2	12	1
TCCCGTCAGTGGCTGC	alt_3878_fdr	19	20	24	19	15	11	23	15	30	20
CTGCAGTATTGGGTCA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTTTTTTTCTCCA	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGTGCGTAGTCTC	alt_3878_fdr	45	51	44	30	42	36	49	41	39	38
AACGCTTGTGACCGGC	alt_3878_fdr	0	0	0	0	0	0	0	0	0	0
ACTATTTAGCATGTAA	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CCATCTAATTCAGTAG	alt_2047_RC	13	91	27	19	62	16	64	22	72	19
GCGATAAGGCCGGAAT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CATTGGGTCACTCAAC	alt_2047_RC	37	61	46	51	63	30	62	34	57	31
TAGAAGCGTGTAGGGC	alt_2047_RC	59	73	59	58	95	65	106	54	105	43
CTACAGTTGTGGCTAG	alt_2047_RC	21	42	29	22	18	20	24	17	28	20
CCGATTCATCGGGTTG	alt_2047_RC	4	9	7	2	13	4	13	4	14	6
CGTCTTTACGGATGTC	alt_2047_RC	31	37	32	34	43	27	66	24	53	30
AGTACCCATTCCAGTA	alt_2047_RC	5	8	13	8	15	10	15	13	12	10
GCCACTTTACTGTGTA	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CACGGTCTACTAATTG	alt_2047_RC	43	104	28	41	84	38	89	23	102	23
TCTACTCATGTTATGT	alt_2047_RC	23	34	26	25	41	24	35	25	45	29
CGCCTAAGGCGGGATG	alt_2047_RC	31	30	18	26	42	33	38	20	60	36
AACTTTGTTAATCCCG	alt_2047_RC	14	19	13	10	17	12	17	6	9	13
CGTAGCATAATTTAAG	alt_2047_RC	8	18	8	14	12	7	13	6	18	7
TTTCCTCGGCACATTC	alt_2047_RC	13	15	10	9	10	9	15	5	13	18
AACAGGATCCTCTTTG	alt_2047_RC	37	66	51	52	67	39	70	52	58	51
TGCTTGGCGTGACCAT	alt_2047_RC	26	41	36	20	53	28	56	32	45	24
GTGTTGAGGTTCCACG	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CTACGTACTCCTGCAG	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
GGAGGAGTAGCACCTG	alt_2047_RC	126	201	192	146	221	149	252	114	228	147
TCAGGCGAACGTTCGT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CAACGGCAATGCTTTT	alt_2047_RC	27	38	34	29	40	20	45	33	35	33
GGACTTACTCAAGTAC	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
GGTTCCATAGAGGCCT	alt_2047_RC	36	59	59	50	61	44	50	51	60	65
CTCCCCTCGTCTGTAT	alt_2047_RC	2	47	9	3	48	4	69	9	78	13
AACCTTACGTCACGCA	alt_2047_RC	23	20	22	18	28	16	17	15	28	15
GGGACCTTATTAATTT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
TCGTTATTTTCAGATC	alt_2047_RC	12	25	18	15	16	13	28	10	27	7
ACCGTACTCTTTAAGT	alt_2047_RC	17	37	32	21	45	26	31	17	28	24
ACTCGGGCCTTAAAAA	alt_2047_RC	10	18	5	7	12	6	22	5	14	4
GTCGATGGTAGCGTGT	alt_2047_RC	26	24	28	30	25	29	31	25	38	30
GACGGTCTGATCTGAC	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CTCAAGACTTCTGGAG	alt_2047_RC	10	23	14	9	33	13	26	15	25	11
ATTCCCGACGCTCGTC	alt_2047_RC	8	25	11	8	19	7	24	22	29	12
CCAGTTGTGTCTTTAG	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CCGTAGGACGGAGCGC	alt_2047_RC	42	44	31	18	50	16	56	20	65	17
TCACGTGTACCGTAGC	alt_2047_RC	28	45	38	26	47	32	53	25	41	37
TTAATGGAAGGGCGTA	alt_2047_RC	48	68	47	34	36	33	68	30	57	36
CGGGTATCTCCTTAGT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
TCTTAAGCGGTATGTT	alt_2047_RC	18	28	30	23	49	23	35	15	36	23
TACGTAGAAAGCTATG	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
ACCTCGCTGCATACAA	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
AATCGACTCGAGATGT	alt_2047_RC	2	10	8	1	11	1	11	3	5	4
CTGCTCACCTCGACTC	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
ATGTTGCTGCTATTTA	alt_2047_RC	14	21	17	15	28	18	32	13	22	14
CTCTAATACCCGTGTG	alt_2047_RC	2	6	2	2	9	3	7	5	10	4
TTCGACAATAATGTCT	alt_2047_RC	26	39	29	28	20	33	46	16	35	17
TTATGCGTATTGAAAA	alt_2047_RC	3	6	5	2	3	4	2	2	2	1
TGGAGACGGTCATGTT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
ACTGCGACGTAGTTTA	alt_2047_RC	6	19	14	14	16	13	13	16	25	9
AGAGAATGTACCGAGT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CGCCTCTTTTTGCATC	alt_2047_RC	23	16	23	18	23	14	22	30	27	19
TCACTCGTGTTAAAGT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
TTGTTAAATTAGCCGT	alt_2047_RC	9	24	10	12	21	13	26	14	22	7
TGTTAGAAAAATCCGC	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
GCACAGGGCCAGCGCG	alt_2047_RC	25	36	42	33	48	22	42	32	56	28
CGCATGAATCGGGAGA	alt_2047_RC	25	57	39	34	63	32	42	37	65	37
CCCCAGCAACATTTAG	alt_2047_RC	49	64	60	55	63	51	75	42	91	43
CTTTCGGAACCTCCAA	alt_2047_RC	14	16	16	13	25	14	17	10	23	7
TATGATCGAAGTCGAA	alt_2047_RC	21	47	30	27	43	26	46	28	37	30
GGCCGCTATCCCGTAT	alt_2047_RC	5	4	9	9	13	7	17	7	22	7
ACCGGCGTCTCGGAAT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
TCCCAAGTCTTGCAGT	alt_2047_RC	16	65	33	38	50	33	44	23	63	19
GTGATACACGGATAAC	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CTAGGGCCTATTGTTA	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
ATTATTGGCGAAATAT	alt_2047_RC	11	19	19	9	20	9	16	9	23	13
CCCAAATAGATCTCCA	alt_2047_RC	41	55	44	35	79	25	68	16	67	30
GATGTAGACCGACTTC	alt_2047_RC	37	42	33	29	52	27	44	26	44	25
GTGTGGTTCACCCGAT	alt_2047_RC	4	17	18	23	20	24	18	11	20	11
GCTACCTCATGTAACC	alt_2047_RC	2	6	3	1	7	4	3	2	10	3
CCACGCTGTAATGGGC	alt_2047_RC	18	75	29	23	86	23	95	17	114	23
GTTACCTGCATCTTAG	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
TTCCCTAAGACAGTTC	alt_2047_RC	46	55	52	39	65	41	60	43	70	41
CATGCCCCAATGTCTT	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
TTCTCTCAACAGTACA	alt_2047_RC	7	8	7	5	3	2	12	1	8	1
GGCAAACTAATGCGGC	alt_2047_RC	18	16	20	12	16	13	24	12	19	12
GACACGAGTCCAGACC	alt_2047_RC	10	18	18	19	22	13	14	13	25	25
TTTGCTAGTTCGTTTC	alt_2047_RC	8	9	7	6	14	5	8	6	11	6
TTCCGTAGATCTACTG	alt_2047_RC	66	81	81	60	86	46	94	50	85	71
GTATCTCAGCGCTGGG	alt_2047_RC	9	27	21	2	18	10	24	19	17	14
TCAAATTATGTTCTCA	alt_2047_RC	43	66	45	34	57	46	58	37	65	26
TTCCTGCCAGTCATCC	alt_2047_RC	15	17	11	6	9	12	19	20	17	14
ATTAGGGGCCAAGGAC	alt_2047_RC	18	16	28	19	31	24	26	15	17	20
ACGACAAGAGGGATCC	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
CTTCATAGTCAGAGAA	alt_2047_RC	25	34	27	19	32	24	38	24	28	25
CCTAATCACCCGGGTC	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
TGTTAGCAGGGAACGT	alt_2047_RC	22	29	21	16	36	19	18	13	30	20
ACGCTGACTTGCATAA	alt_2047_RC	0	0	0	0	0	0	0	0	0	0
ACTTATGTCACGTCGA	alt_2047_RC	4	4	9	0	5	4	5	3	4	2
CCGGCTCCCTACACGA	alt_2047_RC	42	49	50	31	85	48	56	49	69	30
TACCGCGTTGCGATTA	ref_2040_fdr	12	3	4	2	2	3	5	3	3	7
CTTCCGTGGCAGAGTG	ref_2040_fdr	25	24	21	22	17	22	24	21	25	14
GTCTATCTCAAAGCGT	ref_2040_fdr	32	22	34	28	34	32	31	41	36	21
TGAATTAGGGAATTAT	ref_2040_fdr	8	16	16	26	22	10	15	18	22	27
CCCGTTCTATATGACG	ref_2040_fdr	74	94	92	89	102	69	93	56	97	86
GGGCACGTAGTATACT	ref_2040_fdr	11	16	23	19	25	22	22	13	22	19
CTGTTACCGTAACATT	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
GAGTGATCGTCGTTAT	ref_2040_fdr	29	28	31	22	19	23	26	32	22	12
ATGCCGGTTATTCTTT	ref_2040_fdr	17	12	18	18	12	20	10	14	17	17
CGATGGCCCGTTGCAC	ref_2040_fdr	51	58	87	70	64	57	58	69	76	80
CGAATCGCGGTTAAAT	ref_2040_fdr	3	5	9	5	9	4	12	7	8	8
GTTGGCTAATGTGACG	ref_2040_fdr	72	87	84	55	92	69	113	61	96	56
TTCGCAAGCGTGTTTT	ref_2040_fdr	2	5	6	6	6	6	6	6	5	5
GATACCAGGATTTGCT	ref_2040_fdr	58	56	60	44	75	47	56	42	69	62
CAAGGTGCACTGAGCT	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
TCCGGTGTCTTAGGCC	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCGGCCGGCACTG	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGGCCTTTAGTC	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
TTAACCTTGGGTACTA	ref_2040_fdr	41	55	49	48	61	42	54	40	70	40
GTCCCTACCTTTGGTG	ref_2040_fdr	0	3	1	0	6	0	4	0	5	0
TTTCTCTTTAGGTCGG	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
CAATCGAGGTTTTGGT	ref_2040_fdr	29	42	41	42	45	35	40	41	43	32
ATGATCAATCGTTCGA	alt_2040_fdr	279	220	310	279	220	239	213	270	255	254
TCATAGCTAACGTTCT	ref_2040_fdr	60	54	44	43	50	31	45	36	45	43
GTACATGGTACTATCT	ref_2040_fdr	1	0	0	0	0	0	0	0	1	0
CGGATCCATTTCGCCG	ref_2040_fdr	6	11	11	9	8	9	8	8	9	6
GATATTATCGGTAGGC	ref_2040_fdr	14	30	31	21	18	23	17	16	20	13
AGTACACTTCAGCTAT	ref_2040_fdr	9	10	9	7	12	5	17	4	22	3
CTTCTATCTCACTATT	ref_2040_fdr	81	70	100	89	70	80	88	86	97	64
GTTGTCAGCACTCCAG	ref_2040_fdr	16	24	16	27	26	14	17	11	23	12
CCGTGCTTACCTGCAC	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
CAAATGGGAAACAAAC	ref_2040_fdr	82	110	97	78	119	95	108	111	138	99
CCGTTCATGTTAAGAA	ref_2040_fdr	21	83	42	20	83	24	87	37	103	25
CTCAATTGCCGGTTAA	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTGACGTAAGTTT	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
GGTATCTATTCCGATA	ref_2040_fdr	53	70	66	69	64	60	56	57	72	59
GTACGATTTAGCCCTT	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGCTGTGCGCGAT	ref_2040_fdr	5	1	8	2	2	5	5	6	2	1
CTTAGCTTCTGTGGAT	ref_2040_fdr	1	1	1	0	0	3	1	0	0	0
TTAGCCAGTTAGCTTT	ref_2040_fdr	63	76	66	52	61	53	90	57	65	45
GTGGTATCTTCTCTTG	ref_2040_fdr	67	42	69	53	59	41	55	45	49	54
ATTTTGGATTGTCCCC	ref_2040_fdr	0	0	0	0	0	0	0	0	0	0
CATTTTGCTGGCCTGG	ref_6028_new	64	67	117	85	61	60	62	68	63	66
GTCCTTAGCCATATTC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TTATGCAACCCTTCAA	ref_6028_new	0	0	0	0	0	0	0	0	0	0
ACATAGGACGGTCCTT	ref_6028_new	0	0	0	0	0	0	0	0	0	0
AGAGTGCATGTAGTAC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
CTATCGCACAAATTTG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
ACAAGCCACTGGTCTT	ref_6028_new	5	7	8	7	19	9	5	5	20	8
ACCATGTCGGATTTAC	ref_6028_new	11	14	9	11	22	9	10	6	14	5
GATTTTTATAATCGTC	ref_6028_new	22	26	29	21	17	19	15	9	14	20
GTGTTGAGTTTCCTTG	ref_6028_new	31	42	31	22	29	26	38	25	35	18
ATCTGCTTATTGTATT	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TCGGTATCCCTCAGTG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TCGTAGCTGCAAACCT	ref_6028_new	19	13	19	21	16	15	14	21	19	12
CGTATCGCTCGGGAAA	ref_6028_new	0	0	0	0	0	0	0	0	0	0
GTGGCCCTTCTCGTAC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TGGAGGGGTACTGCTC	ref_6028_new	29	35	58	36	42	29	44	27	35	30
GCCTGATTTGAATACA	ref_6028_new	15	17	25	26	19	24	24	17	17	24
AACCTCGTATCGTGGA	ref_6028_new	18	26	24	10	25	12	37	17	32	15
TTTGGTGACTTGGAAG	ref_6028_new	44	79	85	61	73	65	113	58	97	50
TACACTGAGGTTTTTC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
ACGACGCTGTGTTGGA	ref_6028_new	20	25	17	21	12	17	18	24	23	12
CCGTCTCACGTGGATT	ref_6028_new	29	24	22	26	25	24	18	28	37	26
AGGCCTTGAACATGGA	ref_6028_new	31	21	23	21	26	23	31	27	37	28
ATTCTGCGAGTTGTGA	ref_6028_new	44	72	53	42	33	45	65	33	61	44
TACGTTTGATCTCTTT	ref_6028_new	15	11	12	19	7	9	8	11	11	3
TAGGACCCGCCAACTT	ref_6028_new	7	12	17	18	10	14	17	8	17	14
AGCGTAGCACTACCGC	ref_6028_new	30	29	27	32	20	26	37	28	22	20
TGTTCAGAATCTACTT	ref_6028_new	11	13	19	13	9	16	13	10	9	11
GATTGCGTCTGAGATC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
GCTATTTCCTTTTTAG	ref_6028_new	87	91	100	89	82	94	109	101	109	75
ATTCGGGCAGTTTTAC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
GAGCAACCTACGGTCT	ref_6028_new	34	36	35	28	28	19	23	22	23	28
TAGCGTTCATATAGTT	ref_6028_new	9	12	17	8	9	11	12	10	12	16
TCTGAAATAGGCGTGG	ref_6028_new	38	57	61	43	55	54	56	49	47	38
CATCCAGCTATGCAGC	ref_6028_new	5	8	11	7	11	8	12	3	11	12
GGCAAGAAGTTGTATG	ref_6028_new	150	179	246	187	203	165	184	152	179	154
GCGGGGTCGAAATAAG	ref_6028_new	90	98	116	81	114	79	93	67	91	69
CACCGGGACGTAATCG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
GGTTATACGGGAATTA	ref_6028_new	67	67	67	66	78	70	77	62	75	52
TTTCAGGTTAAAACTG	ref_6028_new	35	51	50	59	45	54	67	41	58	54
GTTTCGGGTCTCCGTT	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TCTGTAGAATGGTCCG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TTAGCTAGTGTTTGGC	ref_6028_new	5	8	5	5	7	6	12	5	10	4
TCGTTGAACTTCCGCG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
GCATTGTTTGCATGTG	ref_6028_new	37	32	33	34	36	29	28	28	27	26
CAGGTTTTACCGCTAC	ref_6028_new	13	13	10	5	11	6	10	7	10	7
TTACAAGTGCTTCGCC	ref_6028_new	26	48	48	33	38	29	51	22	44	26
CTTCCTACTGAAGCAG	ref_6028_new	53	58	58	53	50	39	53	47	70	42
CCGTGCGCTGGCATCC	ref_6028_new	0	0	0	0	0	0	0	0	0	0
AGGTCCGTTGACGGCA	ref_6028_new	18	20	18	19	19	27	28	12	25	20
AGCTTTTTCTCGGTGA	ref_6028_new	19	18	21	10	26	13	24	27	19	24
GGGCGCTTATTATCGT	ref_6028_new	7	13	14	5	12	5	13	4	6	12
ACCTCCATCGCCCTCG	ref_6028_new	28	71	30	35	54	29	60	33	47	23
GTCTAGTTTCACATTA	ref_6028_new	18	23	24	25	16	13	23	22	17	15
GTTTTTGTCACACGGT	ref_6028_new	18	16	13	22	22	17	17	14	16	14
AGTCCTCATCGGCACA	ref_6028_new	0	0	0	0	0	0	0	0	0	0
AGTGTGCATGTAGTAC	ref_6028_new	282	360	399	334	404	312	450	293	451	300
CAATTTCAGGTTCTCT	ref_6028_new	24	33	29	41	18	34	30	25	27	26
CTTGTCCATAATTTCT	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TTTCGTAGCACAACGA	ref_6028_new	0	0	0	0	0	0	0	0	0	0
CGGCCTCCGGGATGAA	ref_6028_new	1	0	5	1	3	3	2	3	3	4
TTTGGTTTATTATTGG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
CCACCGTATATTTGTT	ref_6028_new	59	65	57	47	67	51	51	39	72	44
AACCTCGCCAGCTCGG	ref_6028_new	33	26	26	36	25	35	31	29	39	26
CAGTAACTTTTTCCTG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
ACCTGTGGGTCCGCGG	ref_6028_new	42	55	41	45	60	51	47	46	55	40
TGTAACTTCGTTTCCT	ref_6028_new	0	0	0	0	0	0	0	0	0	0
GCCTGTGCCGAGAATA	ref_6028_new	112	133	149	137	136	129	170	114	144	112
GAATGGTCGATTCAGG	ref_6028_new	31	28	47	54	37	48	48	46	45	42
TGGCTGAAATTTCTTA	ref_6028_new	12	11	9	16	6	13	12	9	18	9
ACGTGGTATATGTCTA	ref_6028_new	0	0	0	0	0	0	0	0	0	0
GTAATGACTCTACAGT	ref_6028_new	265	273	341	271	311	227	347	245	340	271
TGCCCTACAGCGTCTG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TTCGAGTTTTTGCCCA	ref_6028_new	0	0	0	0	0	0	0	0	0	0
ACCTGGTCCAGGAGTG	ref_6028_new	38	43	55	43	55	49	60	40	67	33
CAGGAAGCCGTACTTC	ref_6028_new	64	56	82	64	78	82	68	71	67	58
AATCACTTGCCGCTTC	ref_6028_new	17	28	22	29	19	19	25	11	20	25
ATTTTCTTCGTTTGAC	ref_6028_new	25	27	37	36	24	32	30	25	43	24
TGTGCGTTGCCATCAT	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TCTATTCACTAGAAAA	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TAAGTTACATTACTAG	ref_6028_new	53	45	63	68	67	42	52	58	46	45
AGGAGGTAGGTGCTTG	ref_6028_new	94	82	115	126	102	91	114	90	127	76
ACCGGGATTATTTTGG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
CTGTTCAAATCCATTT	ref_6028_new	46	52	48	45	50	45	38	40	61	54
CGAGTTTATATGGCGG	ref_6028_new	5	1	17	6	3	8	5	5	8	8
CATCGTTTTCGCTTTA	ref_6028_new	10	8	7	10	5	8	10	4	4	12
GCCGCCTTGTCGCGTT	ref_6028_new	0	0	0	0	0	0	0	0	0	0
CTTGCAAATTTGGTGT	ref_6028_new	25	28	35	17	28	12	36	18	26	18
GCTCCTTTGTTAGATG	ref_6028_new	134	169	163	144	149	125	155	126	174	132
TACTATTCACTGGCCG	ref_6028_new	8	9	5	3	11	6	7	6	3	9
TATACAGCATGCTATC	ref_6028_new	46	39	37	43	36	24	49	35	34	48
TCGTAAGGTATCGAAC	ref_6028_new	82	124	127	83	93	82	110	72	124	83
GTAGCCTGGGAAATAT	ref_6028_new	19	12	13	12	17	13	16	14	10	9
CATTCGGCAATCAAGC	ref_6028_new	5	7	4	5	5	5	2	1	5	2
TAGTATTTCATGAAAC	ref_6028_new	3	6	8	6	5	3	10	5	8	6
CGCTTTGGTCCCTGGA	ref_6028_new	6	7	4	11	8	2	7	7	9	4
CATTCCGGCTACTCTG	ref_6028_new	19	18	25	22	16	15	29	19	20	24
CTGCGCGGAAATATGT	ref_6028_new	76	59	103	59	50	98	76	69	85	73
CACCAACGTCTTCTTG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TTTGGCTGTGTCCAGT	ref_6028_new	1	2	2	0	1	2	1	1	0	2
TGAGGATGCGCAGACT	ref_6028_new	13	4	11	5	6	12	15	13	5	13
GTCGCGACAACAAAAT	ref_6028_new	8	12	13	18	3	12	6	4	6	3
GCGCTCACGGTCATAG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TGGGTTTATACGAGTT	ref_6028_new	16	19	9	13	9	14	10	9	17	5
TATGGGTTCTTTTTTA	ref_6028_new	13	19	18	11	13	31	16	16	24	14
AGTGTCCTGCAGTCAA	ref_6028_new	8	4	9	8	7	8	9	10	4	7
ACTCTGAGTAACATCC	ref_6028_new	33	51	45	62	74	44	57	40	41	41
AGTAATAGATACCTGG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
ATGATCTTTTGGTATG	ref_6028_new	41	38	56	36	27	34	41	33	38	30
GTCGTTAGCCTTGAGT	ref_6028_new	112	124	105	105	111	76	98	106	124	96
TTGTAATGTCTGGCAA	ref_6028_new	10	11	9	8	16	13	15	14	14	9
GTACAGCGACTTAAGG	ref_6028_new	2	11	10	6	8	5	8	8	10	2
TGGGTTGTGGCATAAG	ref_6028_new	0	0	0	0	0	0	0	0	0	0
TAGGCTTCTGCCACAA	ref_5869_new	0	0	0	0	0	0	0	0	0	0
TTGTTAGCGGTGGCAT	ref_5869_new	30	42	32	28	53	36	38	33	30	29
CATGGAATTATGTGTT	ref_5869_new	30	55	42	34	49	36	35	24	40	35
GTGTCTTTTGTATTCG	ref_5869_new	13	16	8	11	26	9	22	12	20	5
GGGCTCTAACAAACTC	ref_5869_new	22	19	29	20	14	18	30	12	17	14
CGTACGATTCAGCTCG	ref_5869_new	76	97	96	92	108	75	99	96	111	67
ACGGGTTTGCGCTACC	ref_5869_new	11	12	11	23	16	12	28	18	20	9
TGGACAGAGAGATTCT	ref_5869_new	153	160	195	186	182	164	190	157	187	169
CCGGCAGGCTTAACTT	ref_5869_new	12	16	12	11	10	8	16	10	8	13
GAAAATGATCGCGCCA	ref_5869_new	32	26	30	30	29	28	21	23	23	17
TCAGCTCTTCCCAGGT	ref_5869_new	0	0	0	0	0	0	0	0	0	0
GTCTAAGGCCAGATAT	ref_5869_new	8	15	10	9	11	5	24	10	23	4
ACCGGTGTTACGTCTT	ref_5869_new	3	4	9	10	5	7	5	3	13	17
CTAACCATTTTGTTGT	ref_5869_new	0	0	0	0	0	0	0	0	0	0
CGCCATTGATTCACAG	ref_5869_new	0	0	0	0	0	0	0	0	0	0
AAGGTTTTCCAAACGC	ref_5869_new	92	111	109	97	110	119	107	100	106	90
AGTCCATATTGAACTG	ref_5869_new	1	5	1	3	0	1	1	4	2	1
TTTTAATGAGACATCT	ref_5869_new	191	215	245	194	236	235	245	200	258	179
TAACTACCTTTGTAAC	ref_5869_new	0	0	0	0	0	0	0	0	0	0
TATTCTAGGCGCTCGC	ref_5869_new	19	24	22	16	19	15	21	18	16	15
GGTGACTTTTTGACCT	ref_5869_new	0	0	0	0	0	0	0	0	0	0
CCAGTTTGGCACCGGG	ref_5869_new	65	98	101	72	94	54	103	73	101	57
AACGTTGAACCATCGT	ref_5869_new	0	0	0	0	0	0	0	0	0	0
AATGCGCGTGGTACGT	ref_5869_new	25	28	28	28	25	23	34	28	22	25
CAGACACCATTAATCC	ref_5869_new	52	86	45	57	82	44	90	37	85	51
GCCAAACTTCTTTTCT	ref_5869_new	0	0	0	0	0	0	0	0	0	0
GTGATACTCCACTAGC	ref_5869_new	18	20	18	15	21	9	23	21	28	17
CAGTTGGTTGACGTTC	ref_5869_new	4	6	1	2	6	3	4	3	7	7
CTCCATACCGCCTACA	ref_5869_new	2	4	7	12	7	0	7	5	7	6
GATATATCGTCTGTAA	ref_5869_new	0	0	0	0	0	0	0	0	0	0
AGCTATATTTATTTGA	ref_5869_new	0	0	0	0	0	0	0	0	0	0
TGTTTTTCATGTCGAC	ref_5869_new	95	81	111	88	95	88	96	100	97	83
TGCTTGTATGAGTTCT	ref_5869_new	4	19	12	9	13	5	15	4	12	7
TCAATTTGGTTTTGGT	ref_5869_new	4	3	2	0	0	1	1	3	3	0
AGGGTTTCACCGGTAG	ref_5869_new	0	0	0	0	0	0	0	0	0	0
CATATTGAAATCTGTC	ref_5869_new	82	63	65	77	84	53	73	64	73	64
TACGCGGCTTCCCATA	ref_5869_new	5	6	6	9	4	3	5	7	3	5
CGCGCCGATGTAACCC	ref_5869_new	50	71	55	53	69	66	82	70	87	51
TGAAGCGTCCATTACG	ref_5869_new	13	20	20	24	27	21	30	16	28	24
GGATCAGCGAGTGAGC	ref_5869_new	0	0	0	0	0	0	0	0	0	0
TACGCTCCGATAATGG	ref_5869_new	26	29	29	27	37	26	33	31	34	28
ACCGGTTTGGACATGG	ref_5869_new	18	20	23	7	22	9	26	10	25	18
TACAATTCGCGTGGGG	ref_5869_new	0	0	0	0	0	0	0	0	0	0
CGTATAAGCTTGTACT	ref_5869_new	43	79	56	51	77	46	58	43	59	48
CGAACTTCAACGGACT	ref_5869_new	93	91	134	125	108	87	116	103	132	99
GGATACCTGTAGCCGG	ref_5869_new	40	81	69	66	85	63	86	49	83	55
TATCAAGCATTCCTGC	ref_5869_new	21	21	28	18	27	21	18	21	31	16
CCCCATATCGAGCCGG	ref_5869_new	36	41	46	41	43	39	57	39	46	33
CTTGAGAAGGACCTGT	ref_5869_new	35	32	36	29	28	23	41	28	49	28
TAAAAAATTTAACAGT	ref_5869_new	29	29	29	23	46	35	44	37	34	22
GGATGTCTTGACATGT	ref_5869_new	77	89	98	96	94	68	115	82	120	72
ACTCATTTGGTGGCGG	ref_5869_new	61	63	55	45	71	57	60	60	67	57
CAGGGTTGCTCTTCGG	ref_5869_new	0	0	0	0	0	0	0	0	0	0
ACCTACACAGCACCTA	ref_5869_new	38	62	36	49	44	43	63	43	73	35
GAGTGAACTTGCGAGC	ref_5869_new	8	15	10	9	13	11	12	3	12	16
GCTAGGCTTTCACTGT	ref_5869_new	3	7	6	9	8	3	8	2	8	8
TCTGGGACCTTTCGGC	ref_5869_new	9	20	31	20	24	20	35	13	23	18
ATCCATCGTAGTGGTC	ref_5869_new	0	0	0	0	0	0	0	0	0	0
TAGCGTTACTCGTAAT	ref_5869_new	0	0	0	0	0	0	0	0	0	0
ATCCATGGCAACTTTC	ref_5869_new	14	15	19	14	20	7	11	10	15	13
GCTGGTATGTTAGAGG	ref_5869_new	2	11	9	4	9	5	9	12	10	7
CAATCTCGAGATCTAG	ref_5869_new	18	30	25	23	33	25	25	28	31	15
GGCCTAGGATTACACA	ref_5869_new	35	36	47	38	41	37	45	39	56	34
CATCTGAATTTGTGTC	ref_5869_new	18	17	14	14	17	16	18	9	18	13
AGAATGTTCTCTCCTC	ref_5869_new	39	46	40	50	35	34	48	33	36	43
CGCGCGCGCAAGTTGA	ref_5869_new	11	14	33	16	31	19	22	18	15	21
CGGGACTATTGTTCGC	ref_5869_new	3	7	6	6	5	6	10	7	5	4
TCTTTTGTCTATCGCG	ref_5869_new	7	10	10	3	8	10	3	12	9	8
ATGTGCAACATCGCAA	ref_5869_new	0	0	0	0	0	0	0	0	0	0
GGTGATACATGGTGAG	ref_5869_new	0	0	0	0	0	0	0	0	0	0
AACCGTCTCGGACGCG	ref_5869_new	0	0	0	0	0	0	0	0	0	0
ACCGGGCGCACCGGAG	ref_5869_new	34	51	43	37	52	32	41	27	47	34
CAATATAAGCCCTCCT	ref_5869_new	0	0	0	0	0	0	0	0	0	0
GGGCACATTCTTACTG	ref_5869_new	0	0	0	0	0	0	0	0	0	0
TTATCCTTGCTACTGC	ref_5869_new	62	87	71	40	74	54	79	43	110	60
ATTGCTCTAGTTTATC	ref_5869_new	0	0	0	0	0	0	0	0	0	0
CCAAGTGTCCAATCAA	ref_5869_new	0	0	0	0	0	0	0	0	0	0
CAACGATTGGCCATCC	ref_5869_new	5	19	13	8	17	9	21	10	29	4
GGGTTTTGTAGTATCA	ref_5869_new	93	129	137	92	110	113	127	86	125	89
ATCGGAGGATATTTCG	ref_5869_new	18	18	17	17	18	12	19	13	23	12
TAAGTGTTTAGGACTC	ref_5869_new	10	6	7	7	3	2	10	7	7	3
ATTCTTACGCGCTGAC	ref_5869_new	5	6	6	5	5	2	5	4	3	3
TGAATGTCGTGGATTC	ref_5869_new	119	161	164	150	173	124	170	125	178	111
GTTGCTCGTGTTCTCA	ref_5869_new	124	188	149	113	128	129	185	123	160	121
TCCTTCACTTCGCTAG	ref_5869_new	16	29	26	10	34	20	22	23	25	18
GGTTAACTACCTGGCG	ref_5932_new	2	8	10	5	4	4	9	8	8	4
TTGCTACAAGCGTCAA	ref_5932_new	105	112	138	119	150	99	122	106	141	111
TAGCATACTTCATCAG	ref_5932_new	2	8	5	4	5	5	2	5	4	7
GAGTCTACGGGTAGCA	ref_5932_new	15	13	9	16	24	19	12	10	8	11
TACTATCCGGAAAACG	ref_5932_new	41	40	30	26	21	29	30	14	41	25
CACCGGCATATTTCTG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
GTATGATTTATAGCCG	ref_5932_new	3	5	7	4	4	4	7	1	7	8
CCACCGATTATATAGG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
CACGCTTGATAATCGT	ref_5932_new	2	4	9	7	2	1	6	4	4	2
CTACCGATCGACTCTG	ref_5932_new	24	27	11	27	21	8	24	14	30	10
ATCACACATACCTAGA	ref_5932_new	0	0	0	0	0	0	0	0	0	0
AATACGGTTTAGAGGC	ref_5932_new	45	37	37	58	40	20	49	43	43	26
AAAAAATCGATGTGGA	ref_5932_new	0	0	0	0	0	0	0	0	0	0
GAGGTCCAGCGAGCCA	ref_5932_new	7	4	9	4	10	3	8	12	5	4
CGCTCATTCGGACAAG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
AGTCCTCAACTATTGC	ref_5932_new	3	3	7	4	1	3	5	1	4	4
GCATTGGGTTCAGGGC	ref_5932_new	19	19	18	19	16	18	20	19	19	25
CTTCTCGGGTTTCTGT	ref_5932_new	0	0	0	0	0	0	0	0	0	0
GCATCATGCTTGATTG	ref_5932_new	33	30	22	30	28	21	32	21	27	20
GTTCAGGCGTTGTTGT	ref_5932_new	0	0	0	0	0	0	0	0	0	0
AGCGTTGCCTCGATGA	ref_5932_new	33	45	37	44	33	29	42	39	43	34
ACAGCCTGATATTCGC	ref_5932_new	9	19	14	16	34	14	34	12	29	21
TAAGAGTTGTCCGGCG	ref_5932_new	13	14	16	6	10	10	9	10	7	6
CGGCTGATTCCTGCCT	ref_5932_new	5	25	7	11	18	8	18	13	17	8
TTACTTGGAAGTGCAG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
CACGCTTCCAGTTCAT	ref_5932_new	8	30	17	22	21	14	15	22	15	17
CCCTCTTAGGATCCAT	ref_5932_new	0	0	0	0	0	0	0	0	0	0
ATGATCCTACTTGTGC	ref_5932_new	0	0	0	0	0	0	0	0	0	0
GTTGTCTGTAAGATAG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
GGGCCTTCCGTTGGCA	ref_5932_new	28	25	37	32	33	23	28	17	29	30
CCTAGTCATCAACTGT	ref_5932_new	7	20	11	4	14	3	20	9	23	5
ATGATAATAGTACCTG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
AACGTCGCGGAATCAG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
GCTCACTAATCCCACA	ref_5932_new	15	15	13	13	22	10	16	12	11	11
GCATTAGATGCACAGG	ref_5932_new	14	22	23	20	18	29	9	21	30	10
CGTTTGTAGCCCAAGG	ref_5932_new	9	2	3	0	4	6	4	1	3	3
AAAATAAATCAATGGA	ref_5932_new	13	20	18	16	21	10	21	22	15	17
TTCCACGTTGGGTTTG	ref_5932_new	32	30	40	27	33	19	27	32	36	22
TGGTTGATTAATTTAG	ref_5932_new	21	17	36	20	21	36	28	22	30	25
CATATCGGAGGGGTGT	ref_5932_new	10	7	14	13	9	2	7	9	10	6
TCCTAGTCGAACAGGC	ref_5932_new	1	4	1	3	6	2	1	1	6	2
ATTTCTATTCGGCATT	ref_5932_new	105	94	104	112	86	68	96	73	121	64
ATATATTATAATCGCC	ref_5932_new	9	7	3	9	14	9	11	5	5	5
AGGTCCCGTGCGGCAA	ref_5932_new	3	5	7	7	11	8	11	7	7	6
GGTTGAGAGTAATTCG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
TCGCAACTGTGACGAA	ref_5932_new	29	31	37	36	59	41	45	21	41	33
TTTTTCCATTTTCTTT	ref_5932_new	51	46	79	65	51	48	58	65	48	53
GTGTGGATATACTGAT	ref_5932_new	37	49	52	41	44	37	33	40	42	37
GGTGGCCATCCGGTAG	ref_5932_new	0	0	0	0	0	0	0	0	0	0
TTGCAAGGGATATTGG	ref_5932_new	13	33	22	27	28	21	29	14	31	28
GATGCCTGTAGTAAGT	ref_5932_new	26	22	30	23	30	28	28	27	36	20
TAGTTAAATACCGGAA	ref_5932_new	4	3	4	1	4	3	3	6	7	2
ATCGTTTGCTTTTCCT	ref_5932_new	12	10	9	8	9	9	11	8	12	8
ACGGGATTAACTTAGG	ref_5932_new	10	3	2	2	1	5	5	0	3	2
ACTCAATGTATAACCA	ref_5932_new	5	5	4	5	4	4	4	3	3	2
ACAGTCACCTGGGAAC	ref_5932_new	0	0	0	0	0	0	0	0	0	0
GTCGGGTCAAACCACG	ref_5932_new	15	11	14	9	8	11	6	5	13	14
TTTATTACAAGCCAGC	ref_5932_new	14	17	21	18	23	15	22	22	21	14
CCTGCATTTACTTCAA	ref_5932_new	6	27	10	10	18	11	18	8	23	6
AGTAGTAAGCGGCGAC	ref_5932_new	3	6	9	3	6	10	7	3	8	9
ATTACGTAGCGCTTGC	ref_5932_new	14	15	18	13	15	4	10	16	15	7
TTAAGGATCTCTTTAG	ref_5932_new	55	55	48	43	52	60	59	40	85	46
GATGGGATGTGACTGG	ref_5932_new	50	47	58	46	57	74	58	52	51	29
CCCAAAAACGCCCTCC	ref_5932_new	6	9	7	10	9	7	16	5	15	15
CTAGGGTTTCATCTGC	ref_5932_new	16	16	12	9	24	14	24	15	29	14
ATTCAAATTGTGAGCT	ref_5932_new	26	20	21	25	15	14	21	15	21	18
CTTTTCTAAAAGGTTA	ref_5932_new	0	0	0	0	0	0	0	0	0	0
TGTATAGCCTTTGCGC	ref_5932_new	53	65	101	91	77	70	68	65	67	54
TTCTCGTTTGGGTTAT	alt_1643_fdr	11	7	18	10	11	6	13	11	21	14
CGATTATCCGTCTGCT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
ACGACTCAGCATTATT	alt_1643_fdr	25	18	25	27	15	21	26	23	20	12
CTTTATTCTGCACAAG	alt_1643_fdr	98	93	116	101	84	87	91	85	95	92
TCCCAAAGGGTATGGT	alt_1643_fdr	25	46	33	26	25	27	38	27	40	20
ACCGGGTAAGTTCTCG	alt_1643_fdr	3	1	11	6	6	10	4	4	2	2
TGAGCTACCTTATGGG	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTCCGTTGCTCAT	alt_1643_fdr	16	12	18	21	11	15	13	12	14	15
AGCCCCTTATGCAGTA	alt_1643_fdr	4	7	14	7	2	1	8	7	9	7
CTAACTGCGCTCAGTT	alt_1643_fdr	30	25	45	45	33	30	30	24	43	25
TCCGGATGTTGTAATC	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGGTCTTTATGCC	alt_1643_fdr	176	183	239	165	207	188	193	163	238	143
CGCCACGTGGGGTGTC	alt_1643_fdr	69	74	69	87	66	51	61	70	68	54
GCATTTCTGTATGCGA	alt_1643_fdr	7	1	4	1	7	4	6	8	4	7
CAGCGATATAAATGCA	alt_1643_fdr	58	33	68	60	46	61	48	44	59	47
AAACCTTGCCTTTCAT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGGATGATGTGTT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTTTTCGTCCCCC	alt_1643_fdr	290	289	395	337	284	336	292	280	344	297
GACCGTTTCGTCTTCA	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTGTTGCCATGGG	alt_1643_fdr	37	46	61	45	58	38	40	44	44	38
TTATGTCTGGCCCCGG	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAGTATGCGAACC	alt_1643_fdr	10	19	23	20	16	16	15	15	25	15
CCAATGTTTCTAGATC	alt_1643_fdr	5	12	14	6	7	8	9	7	7	8
TGTCCCATACGTCGCG	alt_1643_fdr	4	3	6	5	8	5	9	2	5	6
TGTTTGTGGCATCCGT	alt_1643_fdr	30	31	30	34	28	29	28	38	36	34
GAGTAACCTCTAGATA	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTGACTTAACTCG	alt_1643_fdr	2	2	5	1	0	3	1	3	3	1
GCAGCGTGGGTTTTAT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCATGTTGCTTAG	alt_1643_fdr	42	40	48	38	44	41	36	42	36	38
CCAGGGGGAGTTAACT	alt_1643_fdr	1	1	7	1	2	4	2	2	7	6
CCTCCTCACGCGCTCC	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
AATGCGGAATCGGGGG	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TTACCGAGTGATTAGA	alt_1643_fdr	133	185	166	154	184	133	168	119	181	119
CATCTTCTGTGGTCGA	alt_1643_fdr	44	22	39	38	36	34	34	38	35	38
TCAACTATTCCGATTC	alt_1643_fdr	70	64	73	81	50	62	72	72	56	50
CTACTCAGGACCACGT	alt_1643_fdr	191	281	255	235	295	193	288	196	272	175
AGTTACCGTGCACCCG	alt_1643_fdr	18	16	35	29	23	33	28	22	13	24
AAGGTTTTGCGAGTAC	alt_1643_fdr	151	122	185	157	134	149	132	141	137	124
CCATCTTTTGCAGTCT	alt_1643_fdr	48	39	61	46	35	44	28	47	64	42
CCGGGCTGCCGAGCGT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCTTCCGTCCAGC	alt_1643_fdr	37	33	45	32	38	34	31	34	31	28
CGCGGGAATTAAGCAA	alt_1643_fdr	131	75	134	96	83	86	75	119	78	92
TTTTCATACACCCCTA	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TATGACCCTTCCCTGA	alt_1643_fdr	16	23	37	25	34	16	24	17	22	25
AAAACGGTTAAGTTCC	alt_1643_fdr	57	48	79	65	54	53	46	67	50	50
ATGTGGAGAATGAGGC	alt_1643_fdr	41	24	49	47	30	50	26	33	28	26
TGCAGCACTACGTATT	alt_1643_fdr	11	20	20	11	16	11	18	15	8	12
TTAATTTCTGGGGGCG	alt_1643_fdr	67	41	74	63	46	86	31	43	41	52
GAAGTAGTTCGAGTAT	alt_1643_fdr	21	21	34	31	16	30	23	16	30	22
CATTTCGTCTCTACCC	alt_1643_fdr	9	30	8	7	36	7	29	8	29	5
TCTGTTCTAGTCTCCT	alt_1643_fdr	17	11	15	17	17	14	13	18	14	9
TTCATATTACTCTACT	alt_1643_fdr	40	41	57	58	49	57	34	56	38	34
TAATTCGATCTTTGGT	alt_1643_fdr	13	5	14	9	5	10	5	8	8	9
CAGAATGTACTCGGCA	alt_1643_fdr	80	72	88	78	69	78	75	56	58	79
TTACACTCGAGTTCCA	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTGGGGGTTACGA	alt_1643_fdr	41	33	49	35	38	43	41	42	40	34
TGCGGGATGCGCTATT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTAGCTGCGACCT	alt_1643_fdr	61	50	71	66	78	61	51	64	65	63
TTGCATTGTTCTTACC	alt_1643_fdr	45	55	48	50	73	33	75	48	60	30
CGTTTCCTAGTACCTT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
ACTTATGCCCGGTACC	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGGCACGCCCGAG	alt_1643_fdr	35	41	49	54	33	47	42	48	48	55
TCCTCGAGGGGCGATA	alt_1643_fdr	120	138	105	82	167	84	155	83	171	73
CATATCTAACGTCCCT	alt_1643_fdr	13	13	16	18	14	10	17	16	15	10
AAAATAGCTGGATCCA	alt_1643_fdr	171	132	223	175	148	185	144	158	158	126
CGTCAACGGTAGTATT	alt_1643_fdr	42	38	42	40	43	52	47	26	39	28
TCTACGAACCCTTTCC	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
GCATGGATTCCATTAG	alt_1643_fdr	7	0	1	0	0	0	0	0	0	2
GACCTTACGTGATTGG	alt_1643_fdr	29	25	41	32	25	29	31	22	31	27
TTACGCCCCCGCTTTC	alt_1643_fdr	46	54	58	43	53	44	56	50	56	52
GGTTGCGATAGTACCC	alt_1643_fdr	17	15	13	16	20	3	10	17	14	20
GGTTGGGCACATCGTG	alt_1643_fdr	0	1	0	0	1	0	0	0	0	2
AGTCACTACGGCCGTA	alt_1643_fdr	29	29	35	29	24	15	19	29	23	23
TTGGTACTGGCATACG	alt_1643_fdr	15	17	20	22	14	17	13	9	11	15
TTACACTGGGTTATTC	alt_1643_fdr	20	18	24	16	18	15	17	18	33	14
TTCTTCGAAGATGGAT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGACTTCCATCTT	alt_1643_fdr	0	0	0	0	0	0	0	0	0	0
CAAGTTTCACTTAGTT	alt_1643_fdr	26	23	27	24	23	29	21	21	31	20
TGCAAATAACCAAATT	alt_1643_fdr	6	6	16	12	8	4	14	10	10	4
TCACAGTTTAGCTTTA	alt_6112_new	0	4	2	1	5	6	2	0	3	5
GCGCCTCTCCTACGAG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CGTTTGGTCACTCCGT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGTTTTCGAGGGTGAC	alt_6112_new	94	148	134	121	174	105	183	118	171	74
TGTGCTCTAGTATGAT	alt_6112_new	7	10	7	11	5	9	6	3	4	6
TACCATTGTAGCGGTT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TACTCACCATGTCTCC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TCTAGAAGGATTGCGG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGCTATTTTTTGGGGT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TTACGACGATTGACCA	alt_6112_new	70	95	83	72	89	64	98	68	89	79
ACCTGGGATTGGAAGT	alt_6112_new	12	8	12	11	20	9	8	20	23	9
AGCACTATAAACTCTT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CAGGCCCTTTCGGATG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TACTCTATTGCCTTTT	alt_6112_new	13	27	22	15	30	14	27	28	24	16
TAAGTAGGTTCTGACC	alt_6112_new	1	5	6	3	3	1	4	3	6	2
GAATCGCTGTACTGTA	alt_6112_new	6	5	10	10	6	5	16	6	14	8
AATACCCACTTTCTTG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TCATCAGTGTTATAAT	alt_6112_new	17	25	19	27	32	17	28	16	32	19
ACCTTGTTGGCTATTC	alt_6112_new	7	12	13	7	19	16	15	16	24	15
AATGCGAAGCCTTTTA	alt_6112_new	18	14	16	10	17	7	15	8	14	7
TGGAGTTCAGTCGCCG	alt_6112_new	5	4	4	5	2	5	6	6	8	3
ATTACTTTCTCTGGCT	alt_6112_new	19	30	14	21	29	24	21	14	27	17
TATCGGTTCAGTGATA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGCCGACGGCGTTGGT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
ACCGTCTCTGGACGGG	alt_6112_new	39	56	41	35	41	29	50	32	40	27
TATATTCCTTAGTAAG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
ATGCGTTTACCCACTA	alt_6112_new	2	5	1	0	3	1	0	1	1	1
AATCGCCTAATAAGGC	alt_6112_new	13	10	16	12	10	10	17	10	11	6
CCGCCTCCCGTGCATT	alt_6112_new	31	46	40	21	36	29	34	18	40	14
ATATAGTAAAGGGGTG	alt_6112_new	4	8	6	4	6	5	6	4	10	7
CCACGCTGCGTGTAAC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CGTTTGATTTTCAAGA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
GTCTATCTCTCTTCGC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGCACTATAAACTCTT	alt_6112_new	49	76	75	74	93	44	70	50	66	50
CGTATGGGGGCTTGCG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGCTTAAGATAGTGAG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
ATAAGATCATTCCTCG	alt_6112_new	24	27	26	31	31	33	30	20	26	23
GGTACATCAACGGGTA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CATACTGCTGAAATGA	alt_6112_new	19	14	24	17	34	14	19	15	20	15
GCCTGCTGGGAGTTGG	alt_6112_new	7	9	10	6	8	13	13	13	10	9
TGATCCGGGCCTAGCG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
GGTAGATCGTTTGGCA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGTAGGCGATAAACGT	alt_6112_new	22	37	23	29	31	17	28	30	35	29
AATCCACCCATGTTTA	alt_6112_new	4	5	11	2	5	11	4	4	15	3
ATCATCATACAGTCTA	alt_6112_new	21	35	20	18	37	31	24	15	38	26
GCTCTGCCACTTCTGT	alt_6112_new	43	58	45	30	51	35	61	21	71	33
CTTGAGGACGCCTCGT	alt_6112_new	33	40	58	36	50	34	36	49	36	37
TGATGAATATAAACCA	alt_6112_new	27	41	49	35	54	44	43	30	59	33
GCTTTCTTACTTCTGG	alt_6112_new	7	12	15	3	4	10	14	4	17	6
GTCATCGTTCGCACAC	alt_6112_new	53	76	69	73	93	37	74	56	64	49
GCCCCATACCAGGCCT	alt_6112_new	4	8	7	9	12	5	8	5	5	6
ACGAGTTTTATTTGAT	alt_6112_new	14	12	19	23	31	17	19	22	19	14
AGGATGCATTGCAGTA	alt_6112_new	7	2	4	6	6	7	5	1	6	5
TTAGATACAGCAATAC	alt_6112_new	31	49	28	25	27	15	26	21	35	18
ACCTACACTAAAGTCC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CATAGCGTGTTCTTGT	alt_6112_new	2	14	4	8	6	0	5	3	5	4
TTGACGGTCTCCTGCG	alt_6112_new	7	50	12	15	42	11	48	15	65	7
ATTGGCGAAGTACTCC	alt_6112_new	36	33	32	24	46	27	41	26	48	24
CGCCGGTATGGCTTTA	alt_6112_new	6	23	20	19	23	7	28	20	22	5
CGGGCAAGATATTCGA	alt_6112_new	23	22	31	25	24	34	30	17	37	21
TCTTTTGGTTCAGCTA	alt_6112_new	14	25	12	15	19	14	14	12	25	9
TGGCATTAGTCCTCAT	alt_6112_new	4	6	5	5	11	8	3	7	10	2
CTACTTATTGTGGTTA	alt_6112_new	16	17	20	14	20	14	26	21	14	14
TATTTTGCGTTTACCA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
AATCCCTAGAACAGTT	alt_6112_new	0	0	0	1	0	0	0	0	0	0
TACCGTGCGCACTTTG	alt_6112_new	6	10	14	9	9	6	12	6	5	2
GCAGAAACTCAGCCAC	alt_6112_new	9	12	19	15	25	17	25	16	17	10
AAGTCTCATGCCCAGC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
ATTTGCATATCTCTCC	alt_6112_new	239	226	277	232	284	214	294	192	286	205
ATTCAGCAGCGTAGGC	alt_6112_new	10	22	24	14	16	17	16	10	19	10
GCGAGAAATCAGGTTA	alt_6112_new	52	59	70	55	68	60	81	45	80	58
TGCCCAATTGCATATT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CTCGATAGATACATAC	alt_6112_new	26	49	40	31	76	28	75	22	72	32
CTAATCTACCGGGCGA	alt_6112_new	52	97	73	70	84	39	84	56	82	53
CCCCAGGGTTGCGTGT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CAGGCATCTCATGTTT	alt_6112_new	133	234	173	160	141	132	251	116	283	136
GGTCTAACCTGCGATC	alt_6112_new	64	78	68	85	105	73	78	72	76	59
ATGATCTGCCCGAATT	alt_6112_new	41	28	53	32	30	24	32	27	43	19
AATCGGTTCAGTGATA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
GTTGTAGTAGTTGCCC	alt_6112_new	81	93	89	96	108	64	108	72	108	61
CATGACGACAGCCTTC	alt_6112_new	4	8	4	10	11	5	7	4	3	2
TCATATGTGGCGCATC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGTCTGCATATTTTCT	alt_6112_new	84	51	88	76	52	66	72	79	58	71
CATTCGCGGACATACC	alt_6112_new	16	22	21	11	19	12	22	13	22	13
TCCAGCTTGTGGCGCT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CCTGGTCTTGTCTCCC	alt_6112_new	29	28	31	35	45	27	32	26	38	22
CTTTGTTAGCAGATAT	alt_6112_new	11	10	19	2	11	9	11	8	12	12
AGAGTTCCCTGAACCT	alt_6112_new	10	14	11	15	19	13	15	13	14	8
TAAATGTCTCTAGATC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TATATACGTCATTATT	alt_6112_new	60	79	77	64	52	47	71	63	67	39
TTAGTTTGATACGTAG	alt_6112_new	11	18	16	19	21	13	21	7	26	16
CCATACCTGCCTTGAA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
AGTCCGCTATGGTCAT	alt_6112_new	102	117	105	86	142	83	155	67	156	75
CCAGAGCATTTGGGGA	alt_6112_new	14	16	8	7	14	10	10	5	17	15
GGGTTTACAATAATGC	alt_6112_new	26	24	31	41	35	21	33	25	46	23
GGAAGGTATGCTTCCC	alt_6112_new	10	12	10	8	18	9	19	8	13	16
GCGGTCTCCCAGCTTG	alt_6112_new	15	25	23	15	10	20	15	12	25	8
GTTTCCATTCCGCGAA	alt_6112_new	12	17	16	12	15	21	15	8	17	9
GTTTGCTTTGTTTGCG	alt_6112_new	15	18	16	15	25	6	25	8	26	15
CTGTAGAGAGGTGTTG	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TATTTGATCATTCTGC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CCATCTCGGCATTCTG	alt_6112_new	26	64	47	28	65	44	89	27	71	24
ATATCTGGCTCGGCGT	alt_6112_new	0	0	0	0	0	0	0	0	0	0
ACGTTTGCACACCGGA	alt_6112_new	35	67	57	59	68	60	79	49	85	43
TGGTTCGGGGTATCAC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CCGTAAGTATGCCGCT	alt_6112_new	1	8	3	0	6	2	15	4	8	2
GATTGCGTTATCGTAT	alt_6112_new	16	19	12	15	11	15	15	14	25	13
CCAACTATGTCATTTC	alt_6112_new	12	3	12	6	11	2	7	2	11	3
TCTTTGGCTCATGACC	alt_6112_new	12	20	11	4	13	4	9	14	17	12
ACAACCGCTTACTCAA	alt_6112_new	0	0	0	0	0	0	0	0	0	0
TGAATGTAGAGGTAGT	alt_6112_new	6	8	4	5	8	2	7	3	6	3
CTTCTGTCATGTTAAA	alt_6112_new	8	6	8	15	15	8	14	8	8	1
GATTCCCCGTCAGTTG	alt_6112_new	10	90	22	8	78	16	77	10	81	10
GCACACGATTACAGTA	alt_6112_new	20	55	27	20	60	17	66	23	61	12
CAGCGCCGCGTTTTCG	alt_6112_new	30	85	26	36	111	32	102	30	115	17
GACCTCATCGACTGGA	alt_6112_new	10	22	17	13	23	8	27	9	24	27
AGAATTGGACAACGAC	alt_6112_new	0	0	0	0	0	0	0	0	0	0
CTAACCCTTGGCATTC	alt_6112_new	6	11	5	1	8	7	4	7	5	5
CTCATGAATTTTGATT	alt_6112_new	11	12	11	5	5	7	10	11	10	7
CCTGTACGTCACGGCT	alt_5721_new	13	15	39	20	24	26	21	27	22	14
GTTTGTTTCTTGCGTA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
AGCTAATCTGCTCCGA	alt_5721_new	54	72	73	55	89	54	82	68	81	51
GAGTTGTTAGGTCTTA	alt_5721_new	20	17	25	18	21	19	23	21	21	14
TACGATGTTACGCGGA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GTTGTACGTCGATTGT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
ACAGAAGTGCGGGCAA	alt_5721_new	21	16	18	18	19	15	20	19	21	21
GAGGTCTTGAAAGCAC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TCCAAACCCCCCCATG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
ATCCACTTTTTCTGCC	alt_5721_new	1	0	0	2	0	0	1	0	1	0
GCACCGTACATAGGTG	alt_5721_new	44	33	49	41	38	33	37	45	44	24
GTCCGTACGAATTGGT	alt_5721_new	130	145	175	129	138	142	167	121	154	90
TTTACTTAACATCCGT	alt_5721_new	34	49	50	44	50	47	38	43	48	27
TTCTACATTGCCAGCG	alt_5721_new	13	21	24	13	20	17	11	8	23	16
CAGAGAAGGCTTCTCC	alt_5721_new	43	55	44	35	55	33	70	32	49	38
CCCTGATCATGGTTAT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TGTCCTTTAAGAAAGC	alt_5721_new	21	25	46	29	30	27	35	27	41	24
CCACTAATCAACTTAC	alt_5721_new	80	109	109	98	146	82	156	94	111	62
GAGTTATCCCGTCGGG	alt_5721_new	39	49	53	60	55	40	58	44	50	33
ATCTTGTCCCATCGAT	alt_5721_new	59	58	73	42	65	45	61	43	49	63
ACGTTGCACTTCTAAA	alt_5721_new	7	15	19	7	6	7	13	8	8	12
CCTGTGCACGCTTCGG	alt_5721_new	9	6	3	12	4	7	10	10	10	10
AGTTTAGCGTTGCTCA	alt_5721_new	11	22	21	16	19	14	21	13	34	17
TCCTCCTGACTCAGAG	alt_5721_new	52	71	73	61	75	54	58	50	55	44
GAACTCCGTCCCATGG	alt_5721_new	13	19	14	11	15	14	17	8	14	7
AGTTTAATGCGCCCGA	alt_5721_new	14	16	22	22	24	15	23	18	11	13
ATTGCCACGCTTACGC	alt_5721_new	1	2	3	0	1	1	1	2	0	4
GTGACCGCAACAATGG	alt_5721_new	60	35	56	44	34	44	45	50	56	45
TGCGTGCTGCTTTTTG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TCTATATGCAAATCAT	alt_5721_new	48	67	59	69	64	46	53	70	68	51
GTGACTTGGCCAGCTC	alt_5721_new	70	92	70	77	85	84	90	86	97	59
CGAACTATGTGCTTGG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GAGGTGTCAGCTACTC	alt_5721_new	9	10	18	15	16	15	18	10	19	15
GCCCATGTCTTTCTAT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TGGTCCCTCATTCAAT	alt_5721_new	3	4	4	5	2	0	1	5	8	4
TAGCAGGGAATTATTA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TATTTTCCAAGTCACC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
AGCTGTAGAGGGTCAA	alt_5721_new	51	56	57	47	56	40	58	41	40	34
TAGTCTACCTGGGTAG	alt_5721_new	44	46	50	55	58	33	41	43	44	38
GCTGTGGTTCGTGCCA	alt_5721_new	44	40	45	32	37	42	51	42	40	34
CCGTTTTTGAGTTAGG	alt_5721_new	23	38	30	30	34	26	33	30	31	31
TGGTCAACCTTCCTGG	alt_5721_new	16	16	25	20	20	23	28	18	20	14
ATGAGACACTACCCAT	alt_5721_new	4	18	4	8	16	4	20	4	8	7
ATGTGGTTTACCCTTT	alt_5721_new	13	21	30	12	26	11	17	16	13	8
GGTTGAATGGGCCGCT	alt_5721_new	11	16	13	15	18	18	12	18	18	16
TAGGGGCGACTCGTCG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GAGTCTTATATCAATT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TCAAGGTTTCGCCCGT	alt_5721_new	1	7	10	6	13	1	9	7	3	5
GATCTGGTCGAATGTT	alt_5721_new	60	67	71	59	67	56	93	73	69	47
ACTACCCACACGTTCT	alt_5721_new	32	37	30	29	40	22	27	20	31	22
TTTTGTCTGTAACATT	alt_5721_new	24	24	25	31	35	22	32	36	30	20
GAAATCCCCAGGCTGG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CATGTCTGCACGCCGA	alt_5721_new	23	15	23	28	23	12	27	22	29	20
TGCGTAACGAAAATAC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CCCGCACGGAATTGAC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TTCGTTAAAGTATAGC	alt_5721_new	24	25	35	22	25	32	30	15	25	20
TAATTCTATCCATAGC	alt_5721_new	5	4	10	7	1	7	4	4	2	5
TATTCTCGCTTCGGTA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CTCAACGCCTCAGGCC	alt_5721_new	61	54	73	60	72	59	77	66	70	70
TCAACTGGGTACTGAC	alt_5721_new	26	40	40	42	52	29	41	41	39	35
TTCTTCACAGCTTCCT	alt_5721_new	2	4	3	2	6	5	2	2	2	2
TTTTCTCTGCCTGAAC	alt_5721_new	9	14	9	13	8	7	16	8	17	9
CTTTTCCCCATGATAA	alt_5721_new	3	8	4	2	9	4	21	4	16	2
CATGGGACTCTCGTAT	alt_5721_new	13	26	26	18	13	29	16	16	27	20
GGGACCAGATAGCAGA	alt_5721_new	25	27	38	23	39	25	26	26	28	17
CACTTCTTCGAACACA	alt_5721_new	37	33	21	23	34	24	24	21	27	32
TGAATCTTGGATACGC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CTGTTTCGTGTTGCTA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TCATCAGCGTCATAAT	alt_5721_new	13	39	37	30	31	34	39	34	40	21
GTGTCGACGACGTTTG	alt_5721_new	10	11	17	19	11	17	15	15	10	10
TTTTAAGTCAAAGTAT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
ATATGGCAGAGACGCT	alt_5721_new	9	13	7	13	9	5	9	3	1	12
TTACGTCTCCGTAAAT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TGCTCTCCACGCCTCT	alt_5721_new	31	36	33	28	37	18	39	36	30	19
ATCGGGCTCAGGCTGG	alt_5721_new	16	24	30	21	19	24	29	22	27	30
GCTTAGTCGAATTACC	alt_5721_new	32	42	31	34	41	30	30	25	30	27
TTTTTTTCTTCGGTCT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
AGATCGTTCCTCTGGG	alt_5721_new	59	74	77	57	78	62	68	61	68	51
CATACAAAATTTATCG	alt_5721_new	7	11	22	18	14	13	21	9	16	17
ACTACATTCTTTCCTA	alt_5721_new	31	26	47	27	31	29	43	25	21	29
CAAACACCCAAAATCG	alt_5721_new	64	78	102	69	96	92	97	73	81	70
TTCTATGGCCATGTTG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TAGCTAGGGTATTTTG	alt_5721_new	53	65	64	72	66	50	81	44	72	49
TTCCCCTGCGCTGCTA	alt_5721_new	24	14	12	10	18	14	14	13	10	2
ACACTGAGCGGTAAGA	alt_5721_new	33	34	29	42	22	23	30	17	20	20
ATGATAACCAGCGACC	alt_5721_new	13	13	10	7	10	17	13	11	8	11
CCTCTGCCCTAGGAAC	alt_5721_new	19	42	31	44	40	16	40	21	45	45
ACGGGATTGTCCGGAT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GAAACAAGAAGCCGGC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GTGGCAGGGTTTGGAT	alt_5721_new	24	37	35	37	31	28	34	24	24	21
GTGTGGGCAACCTCCC	alt_5721_new	32	38	43	38	30	22	34	34	38	30
TCGGTAAACAAATTTG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
AACGCTGGTCCACCCC	alt_5721_new	46	51	59	38	42	37	67	45	45	39
TGGTAGCATGAGGTTC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CTGTGCGGGGAGGGTC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TTCATCCCGGTAATCG	alt_5721_new	70	91	101	73	75	64	98	75	73	49
TTTACTGACGGAGCAC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CCATGAGATGAGTAGG	alt_5721_new	20	21	23	11	33	18	33	10	27	7
TAGAGGTCAGCAATAA	alt_5721_new	13	21	29	22	27	28	26	22	7	22
TGTTCGAGATACTTGT	alt_5721_new	46	60	59	45	56	58	66	56	52	37
TGTTGGCACTTCTCTA	alt_5721_new	18	22	28	24	23	10	19	19	21	16
GGTGATAATGTGTTTT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CCTTTACAGAACGCGG	alt_5721_new	11	4	7	3	7	11	9	3	5	7
ACGAGCGATCGATCGG	alt_5721_new	73	99	114	103	115	88	96	83	94	73
CGGAGTATAGTCATTT	alt_5721_new	107	141	118	91	123	107	148	96	145	93
TGTTTCCCTAAGACCG	alt_5721_new	30	20	39	40	28	28	39	30	28	21
GGGATATCCGCATACT	alt_5721_new	9	18	11	15	8	9	13	13	15	7
CAAGAGGGTCATAGCT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TCGATTTAGTCTCATT	alt_5721_new	96	116	123	137	117	90	135	90	153	96
ATACCGTTTTCTATTT	alt_5721_new	38	16	53	36	24	36	33	25	28	21
CAGCCGTAGTAGGCTT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CGGTGTCGTACGCGAT	alt_5721_new	29	34	35	36	52	37	35	44	41	30
ATTACAAGTTCTTTTA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TATTGTGGCGATGCTG	alt_5721_new	29	23	22	24	17	17	31	13	34	16
TGTTTATAAGTGTCTG	alt_5721_new	6	9	9	8	18	14	6	11	16	6
CGTAGGGTATTGATCG	alt_5721_new	11	20	19	17	27	22	13	17	22	14
TTCTCTCGGTACGTCA	alt_5721_new	17	19	28	15	24	26	34	13	24	15
TAAGGTCGTTACTCCC	alt_5721_new	0	11	0	0	6	0	3	0	11	0
ACCTATTTATTAGGAC	alt_5721_new	3	2	5	1	3	0	1	2	5	0
CCTTACTGAGCTTTTT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TATTCAAACGGTGATC	alt_5721_new	90	88	100	97	101	105	77	81	99	63
CTATCCCGTCGTTCAC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GTCCCCTTCGTTTCCA	alt_5721_new	13	22	10	16	16	13	7	10	13	6
CACACGATAATATCAT	alt_5721_new	8	7	6	8	7	3	15	7	9	8
ATTGATACTGTTGTTC	alt_5721_new	13	23	14	16	22	16	23	17	14	16
GGGTTATCTTTCAAGT	alt_5721_new	8	17	19	13	19	10	16	8	26	10
GACTATGTGAACATTG	alt_5721_new	36	28	49	26	36	27	44	30	35	33
GATACCCTAACAAGAC	alt_5721_new	4	3	8	4	1	3	7	4	1	1
GACCCCAGTGTATTTC	alt_5721_new	65	86	104	91	85	65	89	75	76	79
GTAACCCCTATGACTT	alt_5721_new	39	23	33	29	28	36	32	29	32	32
CCTGAGCGATGCCGGA	alt_5721_new	30	35	27	34	33	33	32	24	22	36
TGCCGCTCATGGACGG	alt_5721_new	17	14	8	13	9	12	22	16	24	20
CACTGATTGTCGTTCA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TTCTTTAGCCCTGAAG	alt_5721_new	20	20	32	28	16	23	25	13	24	20
ACTATGTGGCGCTTGG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CGTTTATACTTAGGAC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CTGGTCTGATTCTACA	alt_5721_new	68	53	47	45	49	31	64	46	51	26
TTCAGTCTGCTTCGGG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TGCTTAACCAACGCAT	alt_5721_new	10	8	12	14	12	8	11	8	12	4
CTGCCGACATGACCGG	alt_5721_new	9	15	6	7	4	12	11	10	9	7
CATCGTTCTTGGCCAC	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GAGAAAGGAGCCCAAA	alt_5721_new	157	153	163	136	139	119	141	151	133	111
TTAACTGCCTCATTGT	alt_5721_new	27	17	27	27	33	21	21	34	36	25
TGGGTAGGTAGATATA	alt_5721_new	24	17	9	13	16	16	31	11	22	18
CAACCTCAGCTCGCCT	alt_5721_new	6	8	12	6	18	6	10	12	10	8
CCGCGATTACTGATGC	alt_5721_new	12	29	18	17	17	27	34	13	23	22
GACCTTCAGCTAGTAA	alt_5721_new	10	11	11	7	11	10	16	6	10	9
AATGGAGTTATTGGAT	alt_5721_new	2	5	7	4	1	1	7	4	7	1
TCTGAAGCAATCGTGA	alt_5721_new	115	137	177	155	122	110	147	126	125	120
CCGTACATTAAACCGG	alt_5721_new	18	53	15	24	48	22	32	28	32	21
TATTTTTTTTGATACC	alt_5721_new	63	60	65	49	69	45	53	48	68	40
ACCTTTGTGTTTATCC	alt_5721_new	5	14	16	7	10	9	7	11	11	4
TCGTTAACACGCTCGC	alt_5721_new	5	2	6	7	2	5	5	5	10	7
CCTCTTATGCTATGTC	alt_5721_new	19	27	40	26	27	24	23	24	21	24
GGGTGCCATAAAAACG	alt_5721_new	7	9	15	6	16	12	16	8	11	10
TCTTCGACTCTCTTAT	alt_5721_new	13	6	13	6	9	10	9	9	7	2
CTAATGCACTACTTTA	alt_5721_new	64	84	72	71	59	39	61	68	79	64
TTATTCATTGCTTATG	alt_5721_new	10	14	14	11	9	10	12	7	13	7
GGATTCTGCCTAGTGC	alt_5721_new	6	11	8	3	17	3	15	6	17	2
TCTGAGCATTTAAGCA	alt_5721_new	64	65	83	63	74	55	74	49	73	52
CCAGCATAACCCTTGT	alt_5721_new	4	6	12	10	9	9	8	5	8	4
CAGGGGCCTTTAGGCG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GGCCTAAATGTAGTCA	alt_5721_new	44	40	44	43	39	41	25	30	33	36
GCACATTGTTGTTTAT	alt_5721_new	82	76	107	99	90	80	100	80	106	67
GTTGCCATGCAAATCT	alt_5721_new	25	44	59	37	59	46	55	44	58	54
TCTTTTACGTCCGTTG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
ATCATCTCGTTACCTG	alt_5721_new	69	70	61	79	84	61	91	61	79	55
CTCCTGTCTCTTTCGC	alt_5721_new	25	22	16	24	21	14	8	12	17	25
CGTGGTTTGCATAGGC	alt_5721_new	16	13	12	20	14	16	18	13	11	10
CGAGTTCCCGAAATCA	alt_5721_new	17	23	25	21	27	20	24	20	28	12
TGACTTCTAATGTTTG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
ATGCTTAGTGAAAATA	alt_5721_new	54	69	74	46	64	67	95	46	85	58
ATCCATGTTTTGGGGA	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TTGTGTTACCATTTCT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TTCTCCGTGTCATGTT	alt_5721_new	28	32	26	41	33	38	48	27	36	24
GGCCCCACGTCTAGCC	alt_5721_new	15	12	15	8	10	6	10	7	6	3
CGTTCTCTCTAACAAT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
AGCAGGTCTCGACTAC	alt_5721_new	33	33	17	23	29	21	24	25	31	24
CAGCTACCCTTGGTGT	alt_5721_new	2	12	3	3	9	7	15	9	11	6
AGAGGGCAGTCGCTCC	alt_5721_new	10	11	11	10	15	8	4	9	9	8
TTTCTTGTTGTAGATC	alt_5721_new	61	50	58	66	63	47	46	37	40	48
ACCACTTCAACTTGAT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CTTGACTCCAGGGTAG	alt_5721_new	29	32	36	30	39	30	32	34	32	21
GTGTTCCGAAAAATCG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GCACGATCTCAGCGAG	alt_5721_new	23	22	26	25	20	24	22	20	20	17
GGTTCACGGCACAGCG	alt_5721_new	36	25	23	28	37	21	40	22	25	26
GAATCAAATTACGTTT	alt_5721_new	62	82	66	66	60	54	67	59	57	53
CTTGTGATTTGTCGCT	alt_5721_new	42	67	68	63	53	64	86	47	87	45
TAGCTCTGTCATGAAC	alt_5721_new	0	2	4	1	1	2	6	2	6	2
TCGTTTCTCCTCTCGC	alt_5721_new	40	18	23	28	22	15	17	20	27	25
GTCGTCGCGACCCAGC	alt_5721_new	24	18	29	22	8	16	28	25	29	21
TCATTTCGTTGGCCCT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TATATCGTGTGACCCA	alt_5721_new	126	102	114	92	124	101	103	106	111	93
TCTAAGGACCTATCTT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
CGTTGCGCGCTTGTAG	alt_5721_new	5	9	6	3	16	1	12	1	14	0
GTGTAGTTTGGTCTTG	alt_5721_new	5	8	5	9	12	3	11	11	13	6
CCGAGTAGTGACAAGA	alt_5721_new	49	46	48	33	37	51	49	43	48	17
TATTTTTTTGATACCT	alt_5721_new	0	0	0	0	0	0	0	0	0	0
TCAGCTAGTTACCACG	alt_5721_new	2	2	2	7	7	7	10	8	8	3
ACAAATGGCCACGGTG	alt_5721_new	0	0	0	0	0	0	0	0	0	0
GGTATCAAGGTAGCAA	alt_2241_missing	38	30	46	34	40	39	18	26	36	26
TCACCTTGCATCTGTT	alt_2241_missing	8	10	15	6	10	5	10	14	13	6
GGTTCCGACCTGACTA	alt_2241_missing	54	50	82	89	75	61	57	59	65	57
ACGTCGGACCATTCTC	alt_2241_missing	31	30	51	33	27	23	32	22	25	31
CTAGTTTCAGCCACGA	alt_2241_missing	8	6	13	11	8	4	12	17	6	15
ACATAGTACACATTTC	alt_2241_missing	2	4	5	5	4	2	5	2	8	3
ATCCCTGTATTGGCTG	alt_2241_missing	16	16	13	12	6	10	10	6	10	20
GTTATTCTGAACGCTT	alt_2241_missing	0	0	0	0	0	0	0	0	0	0
TCTGCTGTATGCGAGA	alt_2241_missing	235	223	256	194	206	210	225	205	234	213
CTGTGGAAAATTCCGC	alt_2241_missing	0	0	0	0	0	0	0	0	0	0
GCGTCTACCGCATATT	alt_2241_missing	0	0	0	0	0	0	0	0	0	0
CTGCGACGTCCTCCTG	alt_2241_missing	10	7	8	9	6	10	4	7	3	5
CTATTTCTCTGACCTT	alt_2241_missing	0	0	0	0	0	0	0	0	0	0
GTTCGACCCTCCGGTC	alt_2241_missing	130	117	153	116	129	119	107	130	133	109
TTTTTTCTGTTTTTCA	alt_2241_missing	3	2	4	2	8	8	5	6	4	5
GTCGTAATCTAATTAC	alt_2241_missing	70	67	107	92	60	77	77	80	68	72
ATTGGCGGCGGGTAGA	alt_2241_missing	0	0	0	0	0	0	0	0	0	0
GACGGTAGGAGAGATA	alt_3673_upstream	21	41	36	33	32	25	42	23	40	22
TCGATTACGGTATTGT	alt_3673_upstream	70	71	68	44	70	46	73	43	91	40
TGGAGGGCATTGCGAG	alt_3673_upstream	43	76	50	36	58	46	59	47	69	33
GCCCACATCTGCGAAC	alt_3673_upstream	226	422	267	214	414	211	513	177	477	203
AATTTGGCGGGCACAC	alt_3673_upstream	36	27	42	27	44	33	38	37	51	30
CTTTCAACTCCCACAG	alt_3673_upstream	39	90	67	37	77	58	104	37	100	44
GTCGTTCCTGAAGTCG	alt_3673_upstream	3	7	8	9	10	3	8	7	11	4
ACATCACGGTTATCTC	alt_3673_upstream	164	268	241	206	268	187	320	180	365	178
GCACACTAATACAAAT	ref_3673_upstream	50	81	55	50	95	50	96	45	77	55
TGCCTCGCATCGACCT	alt_3673_upstream	14	32	26	26	43	16	41	26	34	15
GTTACGTACAATCTCG	alt_3673_upstream	38	62	42	51	58	40	58	40	74	33
GACTACCTTTACCGAT	alt_3673_upstream	34	52	38	31	48	27	51	30	54	18
TTCTAGAAAGGTATCT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GAGTGAGTCCCGGATT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTCTTATGTAAGT	alt_3673_upstream	9	12	8	16	16	13	22	13	20	15
GCCAACATCTGCGAAC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
AATTCACATTGTAGGC	alt_3673_upstream	8	7	5	2	9	1	6	4	2	7
TCTTCTAGGATCGTCC	alt_3673_upstream	5	3	5	7	3	8	8	1	4	5
GGTGCGTAGTAACGCT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GTCAGTCTTTTAGCCG	alt_3673_upstream	16	25	25	10	26	10	24	14	34	11
TAGGCAAGCTAGCACC	alt_3673_upstream	32	22	29	19	35	16	31	17	26	7
GAACCGGGTTCATGGG	alt_3673_upstream	34	51	37	30	43	33	52	27	46	23
ACCGTCAACGATACCG	alt_3673_upstream	16	21	27	14	30	15	22	19	31	22
CTTCCTCCGGAGTTAA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGGCGGCGTCTGT	alt_3673_upstream	8	19	16	16	17	14	16	7	12	7
TGCCACCCGATAGCTC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTGCGGAATGTTT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
CAACCCTGTATCAATC	alt_3673_upstream	7	12	10	9	10	6	12	5	11	4
AGGAGCACTGAAATAC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
AGCAGGTTGGTCGTAA	alt_3673_upstream	43	89	73	57	80	65	101	62	98	54
CTTACTGGCTATCCTC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
AGGAGCTGGGCCGGTA	alt_3673_upstream	25	38	36	27	33	29	40	23	31	28
GCGTGTGTCAGTTCGA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
TTAACATAGCAAATGC	alt_3673_upstream	12	24	15	8	11	14	14	7	10	14
CCAAGTAGTAACGATT	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TACATATTTGGAAACC	alt_3673_upstream	14	34	8	16	30	14	26	15	38	21
GTCACCTCGGTGGGGG	alt_3673_upstream	21	22	19	24	32	7	24	17	31	12
TCGGGTCTGTTTAGCT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTGGTTTAGGACA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGCAAGTGTGCGA	alt_3673_upstream	34	50	44	36	70	32	64	45	84	40
TTAACGGCGCATCTTG	alt_3673_upstream	21	15	21	22	21	17	19	11	20	19
TCAGAGGTTTGGTGGA	alt_3673_upstream	41	95	63	42	83	67	100	43	113	49
GGCGTAATAATGCTTA	alt_3673_upstream	10	16	16	10	35	10	27	14	35	8
TGAAGCCTCGTGCTAC	alt_3673_upstream	37	46	36	35	61	23	45	35	63	28
TAACCATTTGACTTCC	alt_3673_upstream	8	9	6	9	6	4	12	10	5	2
GAGAGTGCGGGACTTC	ref_3673_upstream	51	84	47	53	49	47	67	41	76	38
CCCCAAGCTTAGAGTG	alt_3673_upstream	10	15	5	2	22	9	21	8	27	7
AATCTGCGTCTCTTGC	alt_3673_upstream	3	5	8	6	9	4	5	2	6	4
GCACAGATTTTTAGGA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GGATTGCACTTCGGCA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GTCCCTTGCGTACGAA	alt_3673_upstream	16	35	25	15	25	13	24	16	36	19
ATACCAATTCGGATAA	alt_3673_upstream	26	39	35	34	50	35	49	25	44	13
CACGTATCCGGGTCCC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTCCTCAGGGTCC	alt_3673_upstream	83	73	110	71	104	62	95	80	98	82
TCTACCTCTTGCCGAC	alt_3673_upstream	22	33	14	15	29	26	36	20	41	23
ACACAGTGTGTGCGCC	alt_3673_upstream	30	42	35	22	52	24	66	27	67	29
TTTACTGTGCTCATTG	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GTCATCGAATACTTCT	alt_3673_upstream	64	114	98	70	123	72	121	90	135	72
TTAGTTTTAGTCACCC	alt_3673_upstream	22	37	29	25	42	22	27	13	40	16
GTATTAGTGCTTACTT	alt_3673_upstream	26	55	36	19	56	20	47	30	66	41
TGGCGTCAGTGGCTCT	alt_3673_upstream	97	79	89	71	92	65	111	76	98	67
TACGTAGAATGGCAGG	alt_3673_upstream	9	18	15	10	14	8	19	10	11	11
TTATTTGAGGCCTCGT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GGCGCCCGGCTTGTGC	alt_3673_upstream	6	15	5	8	13	5	10	4	17	6
CACCGTAAAGTACTTA	alt_3673_upstream	7	22	4	8	22	2	21	5	22	4
ATCCGGTTAGTATGGA	alt_3673_upstream	11	14	11	9	12	6	17	11	12	8
TGCCCTTGCGGGTTAA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
AGCTGGTACGAGGTTG	alt_3673_upstream	6	5	4	5	14	7	15	7	12	3
TCCCGGCAAACCGTTT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGCCCTGTAGATT	alt_3673_upstream	36	32	41	23	46	18	41	32	42	24
GTTCCTTATATGTACA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACGTCTATTCAT	alt_3673_upstream	1	2	2	0	5	0	2	0	2	2
ATTTGCTTTTTATAGC	alt_3673_upstream	26	36	28	32	45	36	41	25	36	13
TGGGTCATAGAAATGC	alt_3673_upstream	97	131	112	97	141	105	173	108	149	90
GCTTCCTACGTGCTCA	alt_3673_upstream	26	37	39	24	46	25	46	33	47	20
ATCACGAGTGCGTTAC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTGTGTGAAGGAA	alt_3673_upstream	37	54	35	28	66	35	79	35	60	29
TGACTTTGGTTAGTTA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
TATGTGAGTCGTCTTA	alt_3673_upstream	23	54	39	44	34	30	46	31	46	38
GGAAGTTCTCGTAAAT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
CTAGAGCCAGTTTGAC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTACGCGTAAGT	alt_3673_upstream	23	38	45	37	39	36	37	34	41	21
CAACCCCAGTATCCCA	alt_3673_upstream	183	212	191	166	206	176	260	151	277	143
GAGCTGCGACTGATCC	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTGAGGACGTGC	alt_3673_upstream	35	48	34	31	43	27	59	30	54	43
CAGGCGTATCATGAGC	alt_3673_upstream	15	24	20	17	27	15	19	13	16	7
TAAGGGCATTAGTAAA	alt_3673_upstream	36	69	53	38	67	32	65	33	76	35
ACTTAATTGGGACCTC	alt_3673_upstream	17	46	32	33	38	29	43	28	35	28
CCATTAACTATATTGC	alt_3673_upstream	21	25	19	28	33	16	25	14	33	17
CCACCCGTGTCTACTT	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
TGTCGCGAATCGCTAA	alt_3673_upstream	9	6	6	2	4	9	9	9	5	7
CGCAACCTAGACAGCG	alt_3673_upstream	24	43	30	36	51	25	46	27	35	27
TAGGTACAAAAGACCG	alt_3673_upstream	54	70	73	64	77	51	72	57	89	59
CCGGGTCGCGATAGGG	alt_3673_upstream	15	30	17	9	36	8	25	18	42	7
ACTCAGTTTTTCGTGA	alt_3673_upstream	0	0	0	0	0	0	0	0	0	0
GGCAAAGTAAATTTAC	alt_3673_upstream	35	31	36	27	22	30	24	19	40	21
ATCCATATCAGTTTCT	alt_3673_upstream	15	39	35	22	52	28	54	18	39	24
TGATCTTCTGTTGTAT	alt_3673_upstream	63	93	83	78	105	67	89	43	84	47
CTTTAATATACCAAGG	alt_3673_upstream	26	31	34	20	25	21	28	17	48	11
GGTAGCGGAATTTTTC	ref_979_negative	427	292	513	432	297	403	274	408	322	391
CGTGGGGAAGCTGGTA	ref_979_negative	0	0	0	0	0	0	0	0	0	0
CTGTCCCACATACCGT	ref_979_negative	41	42	52	49	35	42	43	55	26	34
AGATCATGGTTAATCT	ref_979_negative	16	13	17	8	10	11	9	20	15	17
ACCGTTTGCACCTCTT	ref_979_negative	41	31	73	62	47	61	45	55	43	38
AGACGTTCGCTCGAGG	ref_979_negative	0	0	0	0	0	0	0	0	0	0
CGTATCACCTCCACGA	ref_979_negative	173	153	203	191	175	157	147	166	153	145
TCGGTTTCCGTTTTGC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
CTGCAGTGCGGAAGTC	ref_979_negative	11	12	14	25	5	20	15	11	15	10
TTACGGCCACGCAAAT	ref_979_negative	21	19	28	31	14	18	22	15	17	21
TGCGGTATATTCTCTT	ref_979_negative	46	37	48	45	34	41	35	42	28	47
TCTTTCGTCATCCCCT	ref_979_negative	88	75	105	92	69	97	87	50	80	81
TGGTGTTGTATTATTG	ref_979_negative	0	0	0	0	0	0	0	0	0	0
AGGGAAGTGGAGCCTA	ref_979_negative	4	11	17	7	2	4	10	9	8	7
GTGCAATACTCATTCT	ref_979_negative	12	11	16	12	10	15	10	16	21	13
GCTTACGAATTAAGTT	ref_979_negative	31	38	28	27	17	25	22	24	18	15
CATGACGGGAAGCGCG	ref_979_negative	59	52	63	76	54	70	60	57	41	62
TATATTCGTACTCGAC	ref_979_negative	80	64	102	85	67	95	50	85	54	100
GCGCCAAGTTGCATAC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
CCGTATTTTCCTTTCT	ref_979_negative	4	13	12	7	9	3	4	2	6	6
ATGAAACGTTATGGCG	ref_979_negative	14	10	17	6	11	11	8	12	11	16
TATCCGCTGCGGTTCT	ref_979_negative	28	29	31	31	14	22	13	31	19	13
AAAATGCAAGTAAGGA	ref_979_negative	0	0	0	0	0	0	0	0	0	0
GTGGTCCATTTGTACG	ref_979_negative	160	152	229	170	161	175	156	163	186	146
TTGACTATAAGTTATT	ref_979_negative	112	92	101	99	86	105	74	90	77	85
TTTTCAGCGTGTCTTT	ref_979_negative	43	36	64	74	35	40	34	51	39	47
ACGCTGGTAATATATC	ref_979_negative	152	96	205	177	156	181	131	209	127	164
CATTATCTGAGCCTTG	ref_979_negative	28	29	36	27	19	17	14	26	11	22
GTGTGGGACTTTCGGC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
AGCACTGCGGGTGGCT	ref_979_negative	21	22	31	37	24	34	29	29	16	17
TTTAACGTAGCCATCG	ref_979_negative	0	0	0	0	0	0	0	0	0	0
TAAGTCTCGTTATGGT	ref_979_negative	0	0	0	0	0	0	0	0	0	0
CGTAATATTCATAACG	ref_979_negative	111	63	114	86	50	100	58	101	69	87
CCTTATATGCTTTGCC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
GCGCACTGCCCCAGAC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
AGATGAGAGTTACGAT	ref_979_negative	0	0	0	0	0	0	0	0	0	0
TTGACTCGCGTTACAG	ref_979_negative	0	0	0	0	0	0	0	0	0	0
TGTACCACTAGGCTGG	ref_979_negative	0	0	0	0	0	0	0	0	0	0
CAACGGCCCTGATTTG	ref_979_negative	58	21	79	63	15	78	15	57	27	49
GTCCCTTCACTCTGAC	ref_979_negative	91	55	104	81	52	92	67	89	83	91
CATCCGTCGGGTATTA	ref_979_negative	0	0	0	0	0	0	0	0	0	0
CCTCCACTCATCTTAG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
GTGCGCAATGCTGCAC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
ACTTTCGTCAAATCTT	ref_979_negative	30	21	36	28	22	38	19	23	13	19
CAACAACTCTTTCATT	ref_979_negative	6	8	10	11	11	13	9	7	11	6
CCGAAGCTCTTGCTGT	ref_979_negative	8	7	3	13	0	1	4	6	6	5
ATTTGTTGTAAGCGAT	ref_979_negative	0	0	0	0	0	0	0	0	0	0
GGGTTCTGTTTTAGGT	alt_979_negative	7	3	12	13	22	13	5	12	12	7
GCAGTCACGATTGCGC	ref_979_negative	2	0	1	0	3	2	1	1	0	3
TTAGGTTTACATACTG	ref_979_negative	28	20	36	38	29	19	14	32	23	19
TACTCATATTAACCAG	ref_979_negative	24	13	39	20	15	14	19	15	9	29
TCAGTCATGAGGCAGT	ref_979_negative	22	12	24	13	10	17	18	19	15	15
ACGGCGCACCCCTTTA	ref_979_negative	2	6	5	5	9	6	6	6	4	8
ATGCATGGTTGGGTGT	ref_979_negative	13	9	20	11	11	18	11	14	10	18
TATACCGGACTCAACT	ref_979_negative	0	0	0	0	0	0	0	0	0	0
GGTACTCGGACCGCCT	ref_979_negative	70	54	68	70	51	60	53	49	62	61
GCGTGAATTGGTCATT	ref_979_negative	93	68	104	93	71	92	69	80	66	76
CCGTGAAATCCGTGAC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
TTAAAAGCACAGCGTT	ref_979_negative	0	0	1	0	0	0	0	0	0	0
GGGTACGCTTTTCCCT	ref_979_negative	0	0	0	0	0	0	0	0	0	0
TATGTGTCTGGATGAT	ref_979_negative	31	22	41	33	27	20	28	25	24	32
TGGTCTAGTGGGATCC	ref_979_negative	71	54	71	79	46	57	50	70	58	55
CGTACAGGGCGTCCGG	ref_979_negative	72	52	99	67	43	75	66	69	65	68
CCCGGGTCCCTTGTTG	ref_979_negative	15	39	20	26	35	17	35	9	29	13
GCCCCCTAATCGTCAC	ref_979_negative	37	14	35	31	18	27	19	30	16	21
CGTGGGTCGCACGCTT	ref_979_negative	34	26	38	31	19	31	21	34	26	24
GACTTGCGGTGAGATG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TTCTCGGCTGGCAAAC	ref_979_negative	37	20	51	43	24	25	47	41	20	41
ATGGGATATATTCTAT	ref_979_negative	0	0	0	0	0	0	0	0	0	0
GTTCCAGGTGTTTCTT	ref_979_negative	42	45	39	37	57	33	43	35	53	44
TTATGAATCAGTGTTC	ref_979_negative	0	0	0	0	0	0	0	0	0	0
TTAATTATTCATCATC	ref_979_negative	89	48	126	69	64	71	58	79	72	85
TATTGGTTCCTTGCTC	ref_979_negative	65	55	62	80	63	76	49	64	58	53
ATCTCTCAGGTCATTG	ref_979_negative	90	56	83	92	57	67	81	88	57	75
TAGGTTCATCGCGGGA	ref_979_negative	15	6	10	14	19	23	21	12	10	13
GGGTAATATGTTACCA	ref_979_negative	4	7	13	13	9	8	5	10	12	5
CAAGTTTGTCTTCTCG	ref_979_negative	0	0	0	0	0	0	0	0	0	0
TACCCACAAAGGTTAA	ref_6045_new	3	7	7	8	10	5	8	4	15	3
GGAACTCAACTAAAGG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
TTAGCTGATGCTTTTT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GCGTGTAATACCGCCG	ref_6045_new	1	3	4	0	6	4	4	2	4	2
TTTGTTACAATGCTCT	ref_6045_new	66	106	96	71	80	77	89	75	97	60
TTTAACTAGACCGTAG	ref_6045_new	12	18	12	23	12	11	15	8	18	6
CTGATACACATCCCCA	ref_6045_new	4	26	1	6	34	4	39	7	51	3
GCGCTATAGGTAGTTA	ref_6045_new	9	18	6	4	14	6	10	5	16	5
CTTATAATTTCCTCTT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GAATTCAGGCTTCAAC	ref_6045_new	3	2	1	7	9	3	3	2	4	0
TTCATGATGCGATGTA	ref_6045_new	21	15	25	23	26	11	25	11	27	12
CTATCGTGCTCCTTCC	ref_6045_new	26	29	33	29	39	32	45	20	29	21
TGGCATAGTGCTTTGC	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GTCGGTTTCGTGTATG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
ATGCGCGGCAAGGATC	ref_6045_new	14	14	7	5	19	9	16	3	11	7
GTGGAGATGTCAATTG	ref_6045_new	2	2	0	1	0	1	1	1	5	1
CGCAGCTTCGTTCAAG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
ACCTCAATCCCGTCAA	ref_6045_new	4	1	3	1	4	3	5	2	1	1
AGTGGAAATTACTCGC	ref_6045_new	52	77	50	56	80	51	73	34	74	43
TGTACATACGTAAGCA	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GTTCTCAGTCGGTTTC	ref_6045_new	16	9	10	13	12	7	10	2	9	9
TTTCGGGTGGGGTCTT	ref_6045_new	10	19	12	19	20	12	35	12	20	10
GTGGCGTTTTTTCTCT	ref_6045_new	11	27	29	33	30	32	23	25	36	23
TGGGCCGTCAAGACAA	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CGCAATACATTGGATG	ref_6045_new	2	7	3	4	2	3	6	1	4	3
CTCTTATTTACGTTAG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CGATCAAACCACCTAT	ref_6045_new	14	19	18	22	30	15	34	10	23	12
GGGGCGCGGGCCCAAT	ref_6045_new	31	27	35	26	31	26	28	9	34	24
TTACTTGGCCCGTTAA	ref_6045_new	8	15	8	15	13	18	23	13	16	12
TACCGCCGAAATCACG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
AAGGATTTTTTAGTTT	ref_6045_new	10	18	16	9	15	8	25	12	22	13
GTGCCTAACTGAGTGC	ref_6045_new	21	41	24	30	67	28	55	27	51	33
TTAATAGTCGTCTCTA	ref_6045_new	43	63	59	41	73	31	63	38	66	40
TTCTGGTAGGTTTTAA	ref_6045_new	0	0	0	0	0	0	0	0	0	0
ACGTCTGGGCAAAGTT	ref_6045_new	25	42	24	37	43	28	34	28	49	26
TATAGTTACTAGGGAT	ref_6045_new	46	73	51	48	60	45	63	30	72	33
AACTCCGGCAGGGATG	ref_6045_new	6	8	7	7	4	12	8	8	11	6
CTTTATGCGGCCCTCA	ref_6045_new	6	21	8	9	11	13	13	4	13	8
CCAGTTTGCTAGTTAC	ref_6045_new	27	53	37	27	52	26	65	37	65	19
TCGGGTTAGTTTTCTT	ref_6045_new	17	19	18	14	38	20	31	13	33	22
AAAAACCGTAATCCTC	ref_6045_new	8	19	9	3	32	14	21	4	18	8
GTCCGTATCGTCTTGT	ref_6045_new	21	37	18	12	38	17	28	6	27	16
ATATGATTATTACCGG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
TGAACCTTCTCATGGG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
ATAAACTGTTTTTTGT	ref_6045_new	25	27	30	31	24	17	29	20	28	16
GAAAGGCGAACTAATC	ref_6045_new	18	32	27	21	30	21	32	27	21	17
ACAACACATCGCCCTG	ref_6045_new	14	31	27	23	34	37	30	26	23	28
GCAACTTTTTGTTTAT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GCTAATAGTATGGGTC	ref_6045_new	10	4	11	3	11	4	9	5	13	4
GATGTCGTATGGCTTT	ref_6045_new	18	24	14	27	15	30	38	13	21	13
CCGGTTTGGTTCTGCT	ref_6045_new	18	13	16	20	13	15	25	13	16	10
TCTGGACCCTTAAATG	ref_6045_new	13	22	11	11	37	16	25	8	27	4
CTGGCAACTTCTTTAC	ref_6045_new	11	13	17	15	13	17	24	10	19	4
TGTGTACGGCTCGAAG	ref_6045_new	20	33	28	29	37	24	31	18	43	15
CCCCTTGTCGCCCAAT	ref_6045_new	18	21	15	28	12	13	21	15	28	9
TTCCCCTGAGGCTTAA	ref_6045_new	0	0	0	0	0	0	0	0	0	0
TCATCCTGCGGGGGTG	ref_6045_new	8	5	8	6	12	7	11	10	10	6
CCGGACACGCTGGTCC	ref_6045_new	34	41	26	23	40	28	40	36	54	25
GTTTTTGAGCTCGTTC	ref_6045_new	12	16	6	9	12	9	15	6	22	12
TTTACCTCTGCGTACT	ref_6045_new	26	43	25	26	41	24	33	12	42	20
TGTGCCATGCGACAAG	ref_6045_new	50	70	70	62	93	59	102	46	99	58
CCCACAGTCCTGTTAC	ref_6045_new	15	30	21	16	27	26	42	17	27	14
CACCAGGATAATGTCG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CCTGGTGTAGTCATAT	ref_6045_new	21	27	29	27	28	21	29	21	28	16
TGGGGGCGGCTGTGCA	ref_6045_new	52	82	50	53	79	36	83	44	77	47
TGAGTTTCTGTGTTGC	ref_6045_new	34	40	29	17	46	19	37	26	41	20
CTGGGCACTCTGTGGT	ref_6045_new	20	28	28	33	40	16	51	24	37	16
GCATCCTGCTAACGTT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
ACTATTACGGACCTTG	ref_6045_new	27	33	32	27	47	18	45	29	38	21
TCGCCATGTTTTTCCA	ref_6045_new	3	10	5	8	9	2	5	5	12	4
GTTGGCCGACTCCTTT	ref_6045_new	13	21	25	16	16	11	16	13	23	13
CTGTCAGTCAGACAGA	ref_6045_new	6	12	1	5	7	2	6	7	9	6
CAGGCCGCGGCCATTT	ref_6045_new	16	38	21	20	34	18	28	22	27	18
ATCATGTCTGTAGGAC	ref_6045_new	29	39	28	15	39	27	53	14	43	11
ATATCGGCGCCTCCGG	ref_6045_new	10	5	8	14	6	12	6	11	13	11
CCACTCTCACTTTACA	ref_6045_new	25	50	39	32	53	27	55	25	57	27
TTTTTATATAAGGGCC	ref_6045_new	0	3	0	2	3	2	3	1	1	1
TTTACCCTCCTTCTAT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
TTTAAACATCAAACGA	ref_6045_new	24	34	35	34	41	28	56	31	52	31
AATCTTGGGCATAAAG	ref_6045_new	14	16	9	10	33	12	28	13	21	19
GCGCCCTTTTAATTGT	ref_6045_new	8	8	3	5	11	8	6	9	7	13
ACCTACCGTGCGCGGG	ref_6045_new	16	36	7	11	30	13	34	13	32	15
GGGGCGCTGTTTCATC	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CCAGCCGGTTTGGGTT	ref_6045_new	5	7	0	1	10	1	3	2	4	1
AGTAGGAATTCGCCAG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CTAGCGCATAACGTCT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CTGTTTATTCACGTGC	ref_6045_new	0	0	0	0	0	0	0	0	0	0
TCTTCAGCGTGCACCG	ref_6045_new	2	2	1	4	2	0	0	0	4	1
CTGTTTATTCACGTAC	ref_6045_new	0	0	0	0	3	3	2	1	2	0
CGCGGACGGATCATTC	ref_6045_new	4	7	11	10	9	10	14	8	20	5
AAGTGTATTAGTGCTC	ref_6045_new	4	9	7	7	4	3	9	1	5	4
TGTGTGCTTTGAGGGT	ref_6045_new	32	67	58	40	46	49	66	25	57	47
GCTTAATCGACACAAT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CCTGTGAGTTCGATTT	ref_6045_new	4	5	4	1	6	5	6	2	4	0
TCTTCAGGCCCTTCAT	ref_6045_new	35	37	36	35	35	41	48	27	41	26
ATTCATTGCTCTAATC	ref_6045_new	0	0	0	0	0	0	0	0	0	0
AGTATTAAATAGTGTG	ref_6045_new	4	7	3	5	5	5	2	4	10	1
AAATCCTCATAGGGCA	ref_6045_new	7	12	12	9	9	2	10	6	14	5
GGGACTCGCGTGTGGT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GTCAAGTCGAGGGTTG	ref_6045_new	17	32	26	21	32	23	30	18	39	8
TACTCTCGGTCCACTC	ref_6045_new	5	20	10	6	21	6	18	4	22	7
TAATTGTACTCTATCG	ref_6045_new	26	48	43	37	33	33	45	31	38	31
CTGCTAAACGAGCATT	ref_6045_new	2	9	7	5	12	5	5	5	10	2
CTGGCCCACATGGTAT	ref_6045_new	42	36	36	38	45	37	60	40	51	33
TGAATTTAAGATTGTA	ref_6045_new	11	22	13	15	17	5	20	14	14	12
CGTTCCCCCAGCGTGA	ref_6045_new	25	40	46	36	34	31	32	33	51	28
GCTTTGTTTGCGGGAT	ref_6045_new	1	3	5	3	6	4	7	0	6	5
CCAAGGTTTATCATTT	ref_6045_new	0	0	0	1	0	1	1	0	0	0
CCGCTGGGATGAGTAA	ref_6045_new	16	23	23	22	36	23	20	21	30	12
ACCCCTGGCCGTTAGA	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CGCAAAACAAGACGCA	ref_6045_new	40	44	57	31	54	38	43	37	54	49
TCTTCAAGTGCTATGT	ref_6045_new	0	7	11	2	15	5	3	6	7	3
CCGCAAGTTGTTCATT	ref_6045_new	52	47	64	41	59	30	57	40	63	42
TTTATGTATCATGCCG	ref_6045_new	86	98	110	98	92	76	106	79	100	80
AGACCTGATGCAAACC	ref_6045_new	25	28	33	21	25	20	30	18	29	18
TTGGTTTGAACCAGCA	ref_6045_new	0	0	0	0	0	0	0	0	0	0
AACTTGCCATTACTCG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GTGCTACATGTGCGGG	ref_6045_new	38	52	56	49	49	39	47	33	44	30
AGGATACTGGTGTCCC	ref_6045_new	15	19	24	27	26	24	46	26	25	19
TAAGCAGTTGTGCAAT	ref_6045_new	11	20	13	11	24	10	18	5	24	14
CTGCCGATATCCCAAG	ref_6045_new	17	30	31	28	33	18	44	34	36	19
CCTTGCCTAAGGTAGT	ref_6045_new	11	34	8	13	31	12	34	9	28	8
CACGTCAGTAGCGGCC	ref_6045_new	5	5	10	6	3	5	13	6	8	4
TTATCTATAAGTCAAC	ref_6045_new	44	47	32	48	50	30	54	43	50	34
ACTGTGTTACCTGCCC	ref_6045_new	7	19	11	3	21	10	17	7	9	8
CCGCGAACCTTTGTCG	ref_6045_new	37	111	59	73	117	38	97	51	91	48
TAAATGGCCAGGTACA	ref_6045_new	0	0	0	0	0	0	0	0	0	0
GGCTTCGTCGAACCAT	ref_6045_new	2	5	1	1	1	1	2	0	1	1
ATTCGCAAGTTTCCTT	ref_6045_new	0	0	0	0	0	0	0	0	0	0
TTTTATTAACATGCTC	ref_6045_new	0	0	0	0	0	0	0	0	0	0
ACCTTGCGCTTGATTC	ref_6045_new	0	0	0	0	0	0	0	0	0	0
CCGATAATGCATGGGT	ref_6045_new	70	83	78	73	87	43	78	63	92	72
TGCGTTTTCGATCAGG	ref_6045_new	43	60	57	55	60	40	56	47	52	46
GTACGCATAACGATAG	ref_6045_new	0	0	0	0	0	0	0	0	0	0
ATAACCGAACGTCGGA	ref_6045_new	24	26	23	14	27	16	38	12	29	11
TTTATGTTAGATGCGC	ref_6045_new	13	12	8	14	8	10	8	3	17	8
TGCAGCAGTTGTGGGT	ref_6045_new	7	21	11	38	16	8	10	11	14	14
CTCTCTGGGGGGGTGC	alt_1903_upstream	17	19	10	27	24	18	38	18	26	21
GGCATCTAATATGTCG	alt_1903_upstream	17	20	20	20	25	12	21	23	17	13
ACTTTTGCAATCGCTT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CCTGATTCTCGTTGCG	alt_1903_upstream	8	19	11	9	7	11	12	7	13	6
ACATTCGTATATGTCA	alt_1903_upstream	30	49	19	21	39	22	34	26	38	37
TCCGTGGGTGAAGTAT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTCGTACTTCGAG	alt_1903_upstream	23	34	22	18	38	17	43	11	44	21
TGCTTTAGCCAGTCAA	alt_1903_upstream	5	5	7	6	13	4	3	11	5	4
GTTCATCCATACGTCC	alt_1903_upstream	22	28	22	20	49	17	25	25	28	25
GATTGGGTATATCGTA	alt_1903_upstream	4	1	7	2	8	2	5	2	7	4
ATTCTTTACGCTGGCA	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGTAAGGTATCAA	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GACGGGCCGGAGATGA	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCCCATATGGTCT	alt_1903_upstream	2	16	6	4	25	2	18	3	16	3
TAATCGCGGCACTCGC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTTTGCAGCTCAT	alt_1903_upstream	49	93	55	56	75	45	80	46	81	35
TGATGATCTCTATATT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CAGTCCAAGTTATTTT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTGGCTAGATGT	alt_1903_upstream	2	17	6	15	15	4	4	9	8	5
GGAAGTTAGTCTCCTT	alt_1903_upstream	9	10	18	12	16	14	22	10	14	8
GCTGTTCCGTCACATC	alt_1903_upstream	9	9	6	4	9	8	10	7	4	5
GCATGTTGGTGAATGC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
AGGCATACTCGATAGC	alt_1903_upstream	19	24	18	20	48	19	36	16	34	32
TCATAGGTTTATTTTC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTGTCTGTTAGGC	alt_1903_upstream	3	12	13	6	19	8	18	8	14	11
CCATAGTTGCGGTCTT	alt_1903_upstream	8	19	4	5	14	5	14	4	16	5
TCGAGTGCTTGGCTGG	alt_1903_upstream	2	10	4	6	15	2	17	3	21	2
AATTCTCAATCACTCT	alt_1903_upstream	25	47	27	27	56	38	55	31	50	23
TGCTATAATTCTTGAT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GATTCCCCGTAACTCA	alt_1903_upstream	10	24	6	12	17	5	32	7	24	9
TCTTCTTGTCCCCAAC	alt_1903_upstream	18	43	16	8	20	17	18	15	26	14
CCCTCTTTGGTCGCAT	alt_1903_upstream	43	106	40	35	92	31	105	42	96	50
CAGTCAGCTGATCTGC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTATTAGTGTTGC	alt_1903_upstream	41	68	47	32	80	32	88	36	78	37
TTGGGGCTTATCGGTT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTGACCGCCACTGGGA	alt_1903_upstream	157	290	193	169	247	169	287	122	281	155
GGGACCGTCGTCTTGA	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
TTACGAAATTAGCCAT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GTAGACCAGTGCATTA	alt_1903_upstream	21	27	16	11	24	11	26	13	35	13
GTATACACAGTTTGGG	alt_1903_upstream	29	28	43	24	29	33	36	20	31	19
CTTTGTCCCATGTTTT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CAATATCAGTAGGATA	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GAACGTGTAGACTTTG	alt_1903_upstream	16	38	16	18	41	15	29	18	32	13
GCCTCGCTTCGGCACT	alt_1903_upstream	15	44	20	19	36	19	36	18	43	23
GACATCTAGAACAGTT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGTCTGCTTTGAC	alt_1903_upstream	1	8	1	0	8	2	10	2	12	0
CCTGGTAGCTCTCTGG	alt_1903_upstream	28	53	27	28	47	27	57	19	64	26
CTTTATTAATTTTGGT	alt_1903_upstream	28	23	34	24	40	20	42	22	46	25
CTAGTGCCGTAATTTT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAATCTTTGACTG	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTACCTGTTTTGC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTAATAGAGTTCTGGA	alt_1903_upstream	104	226	103	91	233	109	193	120	241	91
CGCTCAATGTTCGCCT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
TTCCAGCTAACTCCAG	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GAGTATGTTAGAGTAT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGGATGTTGGAAG	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
ATGAATCCCGACAATT	alt_1903_upstream	15	25	24	19	31	20	26	14	23	22
GACAGGGTGTTATCTC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTTGACTATGGATAAA	alt_1903_upstream	7	16	16	13	15	13	16	11	25	11
TGCACCTCGTAGGATT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTCCAAATCAGTCCCC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGCGTGATCCTAG	alt_1903_upstream	9	18	12	14	32	18	14	6	24	4
CGAAATTTATTTGTTT	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGTGGGTGGTTAT	alt_1903_upstream	71	134	109	104	153	84	147	73	151	82
CGCTTGGTTGAGCTTC	alt_1903_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGGTTGATGATAT	ref_1903_upstream	5	6	4	10	5	4	12	2	7	2
CTCTTTGTGATGTGGT	ref_1616_upstream	37	29	41	52	43	19	43	36	49	35
TCATTCTTATATAAGT	ref_1616_upstream	13	22	17	12	19	9	27	15	20	8
AACCTCACCACTGCCA	ref_1616_upstream	41	42	51	37	44	34	44	56	47	44
GTTGAGATCATAACGA	ref_1616_upstream	15	13	17	10	5	15	17	6	13	6
GCAGCTTACAGAGATA	ref_1616_upstream	80	66	74	68	80	57	111	35	94	53
TCTACTCATGGGCGGT	ref_1616_upstream	17	26	24	34	25	25	26	26	29	19
GTCGTGTAACTTGAGT	ref_1616_upstream	6	7	3	9	5	4	6	8	8	7
CGCCAGCATCCTGTGT	ref_1616_upstream	14	19	29	25	15	27	24	13	29	17
TTCAGGCTTCCAAGCT	ref_1616_upstream	23	21	15	19	13	15	28	12	12	15
GATAACGTATTACAAT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGGCCTCTCAATA	ref_1616_upstream	72	60	97	81	112	58	88	75	96	64
CACCATCATTAGTTCG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCTATGCGCTAGA	ref_1616_upstream	67	106	117	80	117	85	120	67	87	65
CACTTTGCTAGTTGGC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTCTACAGATTGG	ref_1616_upstream	5	9	3	3	17	6	12	4	14	4
GCAACAGGATATACCG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTCGGTGATAAGT	ref_1616_upstream	8	4	7	3	5	5	5	5	13	7
ACCGATAGGCACTGTA	ref_1616_upstream	29	40	35	30	34	30	54	34	50	39
AGCGCTTATTCGACCG	ref_1616_upstream	24	26	17	26	33	22	29	22	35	12
TTTTCGTCCTGAGTAA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CCGGAAATAGTGCGCT	ref_1616_upstream	6	42	13	7	57	10	48	14	59	12
CCACTCGAGAATTCTC	ref_1616_upstream	34	49	68	40	61	23	57	48	55	24
GAGGTTTCATGACGTC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
GCGTACTCGCGATTAA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGCCCCCCAATTT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGTTCAGTGATGG	ref_1616_upstream	263	252	267	250	286	265	253	234	253	234
TATGCGGAGCTCCGCA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CGACTATCAGTCATCT	ref_1616_upstream	39	37	29	35	43	29	42	33	45	23
GGTAATTGAATTGCTT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTCGTCGTTCTG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TAATATCTTATTGTCT	ref_1616_upstream	30	32	52	40	29	43	35	38	38	26
AATGCAAATGGCCCTT	ref_1616_upstream	12	24	15	14	22	10	18	13	32	13
CAAAAGTGGGTTCAGA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTTGGAACAACCA	ref_1616_upstream	20	19	23	23	17	16	21	10	24	15
TAGGAATATCTTAGGT	ref_1616_upstream	69	77	67	75	67	77	78	43	79	77
TAGGACGGCCGGTTAT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CAATACGCACGTACGC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ATACTTCTTCGCTTCA	ref_1616_upstream	14	10	16	15	16	10	15	12	20	12
CATGAACACCTGCTCC	ref_1616_upstream	4	8	6	4	8	6	6	3	10	9
GGCCCAGGGCTTTTAG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
GGAAAGATTGAGTTAG	ref_1616_upstream	50	47	60	42	45	46	54	27	47	32
TACGCCGCGTTCATGT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
GTTAACTCATGTCTAT	ref_1616_upstream	3	2	4	4	4	1	2	0	5	2
GCAAGGCGCACAGCGT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TACAATGTCCCTTTGA	ref_1616_upstream	8	10	8	5	16	9	9	10	5	4
CCTTGTAGCTTCATTG	ref_1616_upstream	66	83	105	71	97	73	97	62	102	59
ATTCCCGATCCCACGC	ref_1616_upstream	10	39	12	13	44	8	40	10	46	12
CGTTGTTTGTGGCTAC	ref_1616_upstream	3	16	16	17	18	4	31	8	41	8
GCTCGGTACGTTCAGG	ref_1616_upstream	10	23	14	13	20	9	8	13	15	7
GTTCTTTCTCCACTTC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CACGTTCATTTAAAAG	ref_1616_upstream	81	119	96	88	74	76	108	81	105	64
TGAAGCCGCCCTCATG	ref_1616_upstream	5	15	5	4	9	3	10	6	11	4
CGAGGTCCCGAATGAT	ref_1616_upstream	23	24	39	25	37	20	31	23	30	23
GGGACCCGCCCGTGAT	ref_1616_upstream	2	2	3	5	12	6	10	1	3	3
GGAGTGCCGTTTTCAC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CCTTACCAATCTTGAA	ref_1616_upstream	4	7	6	5	5	6	6	1	13	5
CTGTCCCAATAGCTTT	ref_1616_upstream	18	30	18	20	23	16	25	12	23	19
GACTGCCTCCAAGGTG	ref_1616_upstream	43	50	74	49	61	51	59	45	68	45
AGGGACGGCATTTTCA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CGGCGTACAACATCTT	ref_1616_upstream	26	25	34	22	30	17	38	25	31	30
TAAACAGAGTTTCAAG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTTTTCACGTACT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTGCATAATCGACTTC	ref_1616_upstream	14	7	19	14	14	6	13	8	14	9
CATAATGGTGCGTGTT	ref_1616_upstream	21	22	25	17	24	20	32	21	30	24
ATTGATGTAATTTAAC	ref_1616_upstream	3	3	2	1	4	4	1	5	2	5
CACCCACCAAGGACTA	ref_1616_upstream	2	2	1	3	2	2	5	5	2	4
ATCTGACGGTCTCCGT	ref_1616_upstream	7	0	4	6	1	1	1	3	7	7
TTCGACAATGAGTGGT	ref_1616_upstream	57	75	57	52	67	46	67	45	76	59
TTGGCGCATCAACCTC	ref_1616_upstream	11	18	10	7	11	10	13	12	18	17
TTACGCGCAGTCAGCA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTTCGTCGGCGCC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CGATCTCCTTTCTTAG	ref_1616_upstream	117	116	131	130	141	127	140	101	146	122
AAGAGCGTGTCAAATA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGACATTCTGCATGAT	ref_1616_upstream	105	110	142	89	139	102	148	93	130	70
TTAATCTAGGCCTTTA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TATGGCTCTCATCGAG	ref_1616_upstream	16	27	24	29	28	27	18	22	26	16
CAAATTTGGTATATCC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TCAAAACTCCTTCGAC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGACTTCCGGCAAACG	ref_1616_upstream	24	27	36	25	37	33	40	23	23	24
TATGTTTTAATATGTC	ref_1616_upstream	119	122	139	145	129	99	140	109	153	108
AAGCTCTGTTAGTCTT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
AACACCGGTTGTGGTT	ref_1616_upstream	4	6	6	5	9	6	8	6	14	8
AAGTTATAATTGAGAC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTCAATCCCGGTGCAA	ref_1616_upstream	8	23	16	18	15	12	17	9	18	10
TTAATGCTGCGCCCGG	ref_1616_upstream	33	46	41	31	35	22	31	24	34	19
CTGGAATCAAGTTCAG	ref_1616_upstream	108	111	143	107	103	79	135	100	150	98
CTTTCGTTCCGTCTAC	ref_1616_upstream	31	28	24	19	26	18	25	10	32	16
TTGACCCCATGGAAAG	ref_1616_upstream	19	13	30	15	21	9	13	17	26	11
TGGACACAGTAGCATC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCTAAGCCAAAAG	ref_1616_upstream	56	52	42	45	46	44	37	33	57	44
CGCTGGCTTAATGCTT	ref_1616_upstream	68	112	89	84	112	78	93	71	118	66
TAATCGACCCAGCCTA	ref_1616_upstream	11	9	21	11	12	8	18	14	30	14
TCATAGGCTTAAACGA	ref_1616_upstream	146	247	197	158	221	132	252	174	231	119
TAGTTCGAGCATTCGT	ref_1616_upstream	5	9	6	7	17	15	25	5	30	11
GAATCGCGGAATGTTC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
AATATTTGATTCTCCT	ref_1616_upstream	38	50	73	72	55	46	46	40	53	44
CCCTAGCACGTTCATA	ref_1616_upstream	20	30	27	30	33	19	21	31	36	21
GGATTTGGGTTGGGAA	ref_1616_upstream	13	3	3	3	1	7	5	8	8	5
TGACGCGATGCTAGGT	ref_1616_upstream	208	264	259	265	248	225	247	236	283	214
ACGCATTTAATTGGCC	ref_1616_upstream	32	22	43	30	46	31	43	32	50	21
CACTGCCCTATAACAC	ref_1616_upstream	75	125	102	80	115	63	126	91	140	70
ACCTCCTGTATGGCGT	ref_1616_upstream	7	6	5	6	6	5	7	3	4	2
TAGTGTCCTACCATCT	ref_1616_upstream	3	5	10	3	1	4	2	3	10	1
TCGCCCTTGACATCCG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
GTATAATATCTTATTT	ref_1616_upstream	20	16	22	25	18	13	12	24	24	21
GGATAACTGCTACGGT	ref_1616_upstream	98	121	120	114	129	114	117	110	117	90
CGACTTAGGCGGACTT	ref_1616_upstream	38	32	43	31	49	44	48	39	40	35
GTAGATCTGGTATACT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGGCTACTCCTAC	ref_1616_upstream	36	75	58	52	80	34	80	41	85	36
ATCTCCTCAGTTTTTA	ref_1616_upstream	75	85	94	66	65	62	76	66	68	52
CCATCTCACGGTCTCA	ref_1616_upstream	1	1	1	4	0	1	1	1	0	1
CACCACGTAATCTAGG	ref_1616_upstream	17	22	19	17	14	17	35	20	16	9
TTTGGGCACATTCACA	ref_1616_upstream	16	23	34	33	35	29	40	24	30	32
CCTTACATTTTTGCCG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
AATTGCTTGACTCCGC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
GACCCCCCGCCATTCC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TACTTCACGCTTTCAT	ref_1616_upstream	118	130	137	116	140	115	139	89	144	100
TTTTAGGGTGGACCTG	ref_1616_upstream	22	23	26	27	34	18	36	27	32	22
CGTAATTACTTAATGC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CTATACTACTTTGTCC	ref_1616_upstream	23	6	35	28	15	27	22	7	21	20
TACATCGCGTTCCACT	ref_1616_upstream	14	19	39	16	27	26	21	26	34	25
ATCTCGAAATTCGAGA	ref_1616_upstream	4	11	9	7	9	2	3	3	5	7
TTTTTGTGTGGCCCCA	ref_1616_upstream	72	101	90	62	90	73	95	68	95	83
CTGTGAGCCGGGCTAT	ref_1616_upstream	68	69	56	51	69	57	68	63	71	56
CTTGCTTAGCAGGCTG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CGGTTTCCGACCAGAC	ref_1616_upstream	0	11	2	3	3	9	2	4	5	2
CAGTGCTGGCTATAAT	ref_1616_upstream	5	13	5	2	7	3	10	8	10	4
CCTTGGTACTGCGTTT	ref_1616_upstream	3	0	5	1	3	8	4	6	2	0
TCGAGGTTCTCTTTCC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TTGAAGTCTTACCTGT	ref_1616_upstream	14	48	10	9	55	7	51	7	57	15
TTATGCTGCTCGTCTG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCTAGGTGCTGAG	ref_1616_upstream	37	46	50	35	54	27	63	37	53	33
CTTCTTCCTGACATGT	ref_1616_upstream	126	132	144	120	138	120	133	121	124	115
AACACTATAGCCCATA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
AGGTATCTGGTGATCC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAAAAGCACCTTT	ref_1616_upstream	19	19	30	20	17	17	24	24	30	14
CTTCTATCTGTTGTGC	ref_1616_upstream	15	16	14	14	19	13	20	11	23	9
ACGAGTCTGCGGCCCT	ref_1616_upstream	31	22	32	19	20	26	33	23	27	20
TTACTTGTCTGCTTTA	ref_1616_upstream	1	2	0	0	0	0	0	1	0	1
TTCCCGTCCCGGTGTT	ref_1616_upstream	36	69	45	41	51	40	64	31	51	29
TTGACCCGCGTTCACG	ref_1616_upstream	34	46	40	30	31	30	58	42	55	42
TCGAACACGCAACATC	ref_1616_upstream	200	230	225	195	256	177	236	169	263	191
TTACGTATCGGTCTCG	ref_1616_upstream	1	1	1	0	1	0	2	0	1	1
CTGGAGGACAGACAAT	ref_1616_upstream	2	6	5	7	4	4	4	5	6	2
TAGCGTCCTACCATCT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ACATTTTTTGTGGGAC	ref_1616_upstream	20	20	15	25	31	13	28	11	22	10
GCGACTCCTCTGTTCG	ref_1616_upstream	20	13	18	28	19	13	16	19	17	18
TCACCTGAGTAGTGTT	ref_1616_upstream	13	12	8	10	13	9	12	9	15	8
TTCCTGAGATGCGCGT	ref_1616_upstream	60	78	79	86	62	75	70	61	86	69
TTCTACTCGTAGTTGA	ref_1616_upstream	15	20	24	12	15	16	18	11	16	14
CGGGCTTTCATACTCT	ref_1616_upstream	30	25	31	19	26	19	26	19	30	27
CTTAGTACGATCACGA	ref_1616_upstream	20	23	27	25	10	20	20	12	22	22
CCCTCGTTGCTCTAAT	ref_1616_upstream	5	15	10	12	16	7	21	13	17	12
AACCATGGCTGAAGTC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
GATATAATTGTTTCTT	ref_1616_upstream	3	2	1	3	1	1	2	0	1	2
GTATAACCAGTCAGGC	ref_1616_upstream	21	23	38	28	16	13	39	19	22	22
TGCTCTGGCCTTGTCA	ref_1616_upstream	11	10	7	10	8	13	11	10	16	10
TCAACGAATAAGGCAT	ref_1616_upstream	10	19	21	16	25	12	19	18	29	24
CTACTGCGAACATAAA	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTAGTGAAGAGCG	ref_1616_upstream	4	7	9	4	10	8	5	2	9	7
GCTTCGGTGTGCCCAC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CGTCAATTCCGGGTTG	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TGATCGCTGCTTCATA	ref_1616_upstream	14	10	12	11	16	12	12	14	18	12
CTTTTGGTTTGCAGAG	ref_1616_upstream	13	19	17	23	17	14	17	12	10	15
GCCTGTAGAGTGGGTT	ref_1616_upstream	17	18	7	15	16	14	24	16	16	13
AAGTACTATCTTGGCT	ref_1616_upstream	26	34	35	29	28	21	38	39	49	28
ACCACATTTATTTTTC	ref_1616_upstream	8	14	8	8	8	11	13	3	19	20
CCGGCACCGCTTAGAG	ref_1616_upstream	2	8	5	5	6	3	9	3	8	2
CTTCGTCTCCAGTGTA	ref_1616_upstream	0	6	5	6	10	1	6	3	7	4
ATTATATGCTATTGCG	ref_1616_upstream	21	15	22	15	8	20	16	14	25	14
ATCTACCTGGGTTCCC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
CACATTCTTAGTTGGG	ref_1616_upstream	9	11	11	7	24	18	8	16	23	12
TTTTTTCGACAGAGCA	ref_1616_upstream	36	47	44	31	40	32	33	19	32	34
GCCCCCCCGCCATTCC	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGGCGTCCCCAGT	ref_1616_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGTTGGCATCAAA	ref_1616_upstream	14	7	21	14	13	12	20	15	13	2
GATCCCGCGCAATGTT	ref_1616_upstream	44	30	32	38	19	28	33	20	39	27
CAGTGAGGCTTCGCCA	alt_5065_fdr	38	16	41	23	26	22	27	32	19	22
TTAAAAATCGCTCTAC	alt_5065_fdr	111	95	114	132	84	112	94	104	87	74
CGCATCACGAACTGGC	alt_5065_fdr	22	15	27	23	15	15	22	29	19	24
ACATTGTATTATATTA	alt_5065_fdr	103	72	130	121	95	98	90	84	92	89
TGCACGCTCATTTACT	alt_5065_fdr	138	79	187	133	87	122	90	127	83	114
TCTCACGGTCCTTCAG	alt_5065_fdr	24	22	31	26	41	17	30	19	30	25
TCTATTGCGCCTCACC	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
TCACCGTCCTAGTGCT	alt_5065_fdr	9	13	22	24	19	21	22	12	16	12
TTCGTTGGAACGTCCC	alt_5065_fdr	4	9	2	9	10	1	10	1	5	0
ATGTCCGAGATAGACC	alt_5065_fdr	174	154	231	244	129	195	175	181	198	175
TCAATCTGGTATGGTC	alt_5065_fdr	54	38	62	47	43	48	34	61	39	43
GAAAGTTCCGAGCCGG	alt_5065_fdr	12	7	4	11	9	13	7	13	10	16
CCTTCGGCGCGACTCG	alt_5065_fdr	45	23	44	42	26	45	34	33	29	41
TTCTTGTGCTATGTAT	alt_5065_fdr	26	11	40	19	24	23	15	27	17	24
TCTCTGGGCCGTGCCC	alt_5065_fdr	37	55	44	53	47	35	36	42	47	30
GGTCATACACGTGCGC	alt_5065_fdr	57	42	62	50	47	35	43	48	43	32
ACCTCCTCGCTTGCTC	alt_5065_fdr	9	19	26	14	13	19	24	14	17	13
GACAGCTCTGAAATAT	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
CAAGTGCCTGGATCTG	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
ATCATATCACGACCTT	alt_5065_fdr	4	0	0	5	1	6	2	6	0	4
TCATATTCGTTTTCAT	alt_5065_fdr	57	32	96	51	62	59	35	70	45	53
AGAGGTCATACATTAG	alt_5065_fdr	46	36	41	46	39	37	37	46	41	35
CCATGAGTACCGGCGG	alt_5065_fdr	35	21	34	28	27	33	15	27	24	27
TCCCTCAAGTTTCTAA	alt_5065_fdr	170	141	256	197	182	150	159	165	166	188
GCACATCTGACAGTGT	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGATGACTGGAT	alt_5065_fdr	29	28	31	29	11	37	17	24	20	19
CGATACCTACGCTGAT	alt_5065_fdr	25	28	27	15	19	24	24	20	26	20
GTGCCCTAGCATAGTT	alt_5065_fdr	29	44	67	43	47	43	53	62	47	47
CCATCTGGTTGCTGTT	alt_5065_fdr	2	6	3	3	6	4	3	2	4	4
TTTCGTGTGTGGAGCC	alt_5065_fdr	22	29	49	29	21	34	24	36	25	30
ATGACCGAAAACGGGA	alt_5065_fdr	153	136	221	154	134	151	120	166	116	145
GATCATGGGGTTTCAT	alt_5065_fdr	8	12	11	8	10	12	5	12	3	13
TTTGGCTTTGTAACAC	alt_5065_fdr	31	10	30	23	15	29	22	29	23	25
AGTCAGTCTCGTGCGT	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
TCTATAGGGATCTTAA	alt_5065_fdr	75	67	102	81	66	80	57	90	52	81
TCTAGTCATGTTAATG	alt_5065_fdr	3	4	5	5	5	7	7	2	1	1
TCGCCATGCTCAACGT	alt_5065_fdr	22	14	21	14	17	31	28	23	14	9
TTAGTCATAACGGCCC	alt_5065_fdr	24	25	30	32	10	35	18	20	24	30
CCTTCGCTCATGTTAA	alt_5065_fdr	54	38	67	55	41	33	40	48	52	49
AGAGTCCAGGTAACAA	alt_5065_fdr	46	38	37	47	31	34	34	36	33	36
ATATTGCGCTATTTAG	alt_5065_fdr	14	15	18	11	10	10	10	10	25	12
GCTAATCTGGCTGTGT	alt_5065_fdr	85	46	92	78	44	66	47	68	57	60
CGGATCTTCGGGTGGG	alt_5065_fdr	138	94	171	145	99	151	97	133	88	132
TCCCATGTAACTGTTC	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTGATAGGTCTCC	alt_5065_fdr	28	27	54	38	25	39	42	27	34	30
AACCTCTTACATGCGG	alt_5065_fdr	25	12	18	26	12	17	15	18	10	12
ATTTGGTTATCTTTCG	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
ATAAACGTCACGTTCT	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
GTCAAGTTTGACCTTG	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
GTCCATGGCTGACCAT	alt_5065_fdr	79	75	136	103	74	88	66	67	75	68
ATTACCCTTAGACCGA	alt_5065_fdr	19	5	14	15	10	17	13	12	8	22
ACCTGTAGGTATTGGC	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCTCTTGACGGTT	alt_5065_fdr	15	12	14	13	12	16	10	15	11	6
GCAGTTTCGCAGCTCC	alt_5065_fdr	267	193	272	274	193	276	196	263	172	218
TCCCGACAGGGAAGTG	alt_5065_fdr	117	101	177	121	88	120	95	122	88	119
CAATGGGCTCTGTCGT	alt_5065_fdr	20	5	20	16	3	9	7	14	7	12
GCCTCTGAACTCGTTG	alt_5065_fdr	10	14	17	13	17	12	12	17	11	6
CCACTGTGTCACAAGT	alt_5065_fdr	18	13	26	27	17	18	14	26	15	10
GTGTGATACAAAACTC	alt_5065_fdr	23	22	28	19	26	13	16	19	10	26
GGCTGAAAATCGTCGA	alt_5065_fdr	72	43	84	70	44	66	49	63	43	66
CCACGTTAGAGCATCT	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCTCATGAGACAT	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
TCACAGCAGTAAGTAG	alt_5065_fdr	55	35	79	66	29	54	42	45	29	50
ATGATCCGGTTGTCAC	alt_5065_fdr	66	44	69	78	51	61	38	59	54	61
GCCCCCCACTATGTGT	alt_5065_fdr	169	130	183	150	117	136	124	145	154	150
CCCTAGGCGTACCTTG	alt_5065_fdr	19	17	32	25	16	39	17	19	15	23
AAATAAGGCGGAGGTG	alt_5065_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTTTCACTCTATA	alt_5065_fdr	52	22	62	59	34	57	28	61	40	38
CTGCGTTATATTTGCA	alt_5065_fdr	53	46	94	82	51	60	41	42	65	52
TGAAAAGCAATACCCG	alt_3406_fdr	12	16	21	14	19	17	20	20	22	26
TTCTACTTGAACCCAG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
ATGAGGATGAAAATGC	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
ACGGAGATACTGCACC	alt_3406_fdr	10	29	18	11	11	9	20	13	18	16
TTCACTCTTGACCACT	alt_3406_fdr	34	49	46	42	49	49	47	39	47	26
CATTGAAGGGACAGCT	alt_3406_fdr	34	46	39	20	43	20	31	26	27	19
CTGACAGATCGAGGTC	alt_3406_fdr	22	25	23	21	36	18	32	17	43	13
GTCCTTCTAAGACTTT	alt_3406_fdr	7	11	19	11	18	12	16	7	16	2
AGACACCCGATATTAA	alt_3406_fdr	8	14	11	3	6	2	6	5	10	4
TAACGGATGAGGGTGA	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
AAATAGTTACCTTTTG	alt_3406_fdr	28	37	32	26	52	31	36	34	54	22
CCCAACCCCTTGGCGT	alt_3406_fdr	30	97	71	52	95	49	89	43	114	53
CCTAATCCTTTTCGGA	alt_3406_fdr	13	18	22	15	25	15	29	11	23	16
ATTTTGTTGATCAGGC	alt_3406_fdr	20	27	28	34	25	17	22	24	21	24
CACCCTGGCTGACCGG	alt_3406_fdr	51	62	40	53	63	49	53	42	64	38
ATCGAATTTCGTTCCA	alt_3406_fdr	35	53	39	32	35	27	34	20	47	34
AGTATCTTTACCGGAT	alt_3406_fdr	4	7	11	5	10	8	7	8	7	10
AGGCAGCCCCGACGTC	alt_3406_fdr	0	3	1	2	2	1	4	2	7	1
TTTTCTTTGTATACGC	alt_3406_fdr	18	22	26	15	22	18	22	19	25	19
GTCCAAGAGACCCTTG	alt_3406_fdr	36	39	52	45	39	30	35	30	47	29
ACGAACAGATTTATAA	alt_3406_fdr	70	81	119	71	111	83	97	69	127	67
GCGTTTTCGGGGTTCT	alt_3406_fdr	83	102	99	78	111	67	79	82	99	66
ATCGGTAACATTACCA	alt_3406_fdr	21	15	22	7	23	12	8	12	14	5
CGTGAGCTTTTCTTTC	alt_3406_fdr	54	60	60	55	109	53	75	59	113	42
TATGTCCAGGTCTCCT	alt_3406_fdr	3	4	2	4	4	4	5	2	2	3
CTGAGTTGTCGCTCAT	alt_3406_fdr	18	19	20	16	19	11	16	11	21	17
CGTGCATCCTCAGTAC	alt_3406_fdr	5	8	6	8	4	5	4	10	15	2
GCTGTTCAATTGTTTC	alt_3406_fdr	41	58	43	64	65	51	68	36	57	48
GTCTGGAGTCGGATCG	alt_3406_fdr	23	24	29	20	30	12	29	21	42	15
CTTCCCGATGCAATGT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTATTGTCGAATC	alt_3406_fdr	6	4	6	7	8	6	5	5	9	6
CACCATCCCTTTTTTG	alt_3406_fdr	17	33	19	32	41	18	35	18	23	21
TAGGAGGCATTTATCG	alt_3406_fdr	40	52	46	36	48	28	56	39	48	37
AATGAACAGAGTCGGG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
ATTACGCATATGTCAT	alt_3406_fdr	85	83	75	70	75	53	78	44	89	46
TTCCGACTGTACATTT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TCATGGTGTCTTGGCT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
ACGTCCGTAGTCCTTC	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GCCACTGCAGCCGTAT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
CGGAAAATTATTCATA	alt_3406_fdr	123	189	193	150	194	161	182	150	207	163
TAGGCTTTTGTTAAGG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGCAACCGGGAGTAGG	alt_3406_fdr	13	16	21	26	19	17	23	18	26	9
CCAATTGATTGTAGGG	alt_3406_fdr	50	210	51	67	203	52	201	49	221	53
CTCACGTCCTAGCGTT	alt_3406_fdr	4	10	1	6	2	6	6	5	12	5
GCATGATACTTCGGGT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TATTTTGCTTCGGGTT	alt_3406_fdr	50	60	88	62	61	46	78	69	85	32
TGCTACTTGGCCTACA	alt_3406_fdr	148	188	180	137	201	144	191	145	213	128
GCTACGCGCCATTTAA	alt_3406_fdr	31	43	36	40	64	29	50	19	45	36
GTCAAGTCCGTTCAGA	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GAATGGACGGTGGCGT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGATGGCTTTTTGCTA	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTTCAGTATCAGA	alt_3406_fdr	30	27	31	30	29	20	41	28	29	34
GGGCTTTCCGCTATTT	alt_3406_fdr	1	3	4	4	2	1	4	1	2	2
CTGGCGTATTGTTAAG	alt_3406_fdr	24	48	30	36	60	44	38	35	58	18
GCCCGCTCGGGGCATC	alt_3406_fdr	49	58	41	44	49	55	68	45	57	38
TAGGCTTACTTCTCTC	alt_3406_fdr	11	7	7	10	15	3	10	6	8	5
TCCTGTACAAGGATCG	alt_3406_fdr	18	31	12	13	17	15	24	18	10	12
GCAAACCAGTTCGCAT	alt_3406_fdr	12	20	14	11	10	8	17	10	11	13
GAGACTCTCTATGATC	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTTTATGTGGGC	alt_3406_fdr	41	70	84	58	56	58	59	54	60	41
CATCAGCGCAGGCCCC	alt_3406_fdr	20	47	34	19	41	19	37	17	39	15
AGCCTCATTGTTCGCT	alt_3406_fdr	4	7	7	4	4	7	8	7	1	3
CTAGTTCGAACCTACA	alt_3406_fdr	0	0	1	0	0	0	0	0	0	0
TTCAGCGTGTCGAGTA	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GGATACACTCTGCATC	alt_3406_fdr	42	78	50	43	72	35	74	41	82	44
GCAACCAGCGCCCGTG	alt_3406_fdr	128	124	139	119	141	88	134	114	138	93
GTCCGGTATCTTCCGT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTGGGGCTCGCG	alt_3406_fdr	22	25	32	30	30	36	28	21	38	21
CCTCTACCCTACAAAG	alt_3406_fdr	31	76	44	48	74	32	74	46	91	34
GCCCCGAGCGCTCCAC	alt_3406_fdr	13	14	26	16	25	20	36	25	48	18
CCCGTGCGAGTCTTAT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGATCACAGCGTACTG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GATGTATTCCGGGAGG	alt_3406_fdr	52	50	67	62	32	49	55	42	43	34
TGTTTAAACTGGTATC	alt_3406_fdr	52	51	61	40	63	37	61	45	85	39
CCCGTCTTCCTGATTT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTCAAACGCCTC	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
AAATCACTGATTTAAG	alt_3406_fdr	35	32	41	25	42	33	37	25	33	22
ATGTCTCGTTTGTTAC	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTACATACGGGTC	alt_3406_fdr	86	112	114	115	100	92	124	79	113	97
TTTCTGCATACGGCTC	alt_3406_fdr	98	147	124	87	119	108	129	80	176	100
ACCGACGCCCGCGGCT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGGGACTCTTGG	alt_3406_fdr	31	36	35	43	38	44	39	25	45	38
TCCGTAATTCGACACA	alt_3406_fdr	33	40	36	19	37	21	40	21	52	20
GCCAGTAGCCGTCATT	alt_3406_fdr	56	69	44	48	64	44	62	42	70	44
GGAAGTCTTACTCTTG	alt_3406_fdr	26	33	25	36	28	15	35	19	37	22
CACCATGTGCCAGCAC	alt_3406_fdr	6	5	5	8	10	1	10	4	9	7
AGGGTAGCGTTCTTGT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TATAAGCCCCCAGATG	alt_3406_fdr	137	153	135	110	145	115	145	107	163	99
TGCCAGTCTGTCCCAA	alt_3406_fdr	15	12	14	16	12	8	8	9	17	5
GAAGCTCTTGTTTCTG	alt_3406_fdr	9	17	9	14	22	19	20	13	18	13
TGATTTAATGCTTTCT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TGTCCTATGTACTCCC	alt_3406_fdr	7	76	6	9	69	3	69	2	90	3
CCCGAATTAGTTTGTA	alt_3406_fdr	7	23	13	14	32	20	32	16	32	14
GATGTTCTCAGTACCT	alt_3406_fdr	4	2	2	2	4	3	5	0	1	2
GACTCTCTTTACTGGT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TAGATCCTATTGGTCG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTTCAAAGACGG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTATATATCTTTA	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
ATAAACCTTTGGATGT	alt_3406_fdr	35	34	47	40	65	29	60	32	32	28
CTTCAGTAATCATTGC	alt_3406_fdr	111	120	105	115	131	110	139	67	151	86
TTACATCACTCACGTC	alt_3406_fdr	22	24	21	16	33	16	34	27	22	20
TATCACGATTGTAGCT	alt_3406_fdr	17	40	12	21	29	19	24	15	29	17
CGTAGACTTTGTGCGT	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GAGGTTCCGCGAAGGC	alt_3406_fdr	21	18	22	11	28	23	20	23	23	6
CTGGCACTGCGCAGCT	alt_3406_fdr	57	86	60	52	83	50	77	43	99	48
GCCTATGATCCGGTCG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTTCGAACCTACA	alt_3406_fdr	154	256	222	180	292	166	283	165	278	153
TCCTTTGTGCCTCCTC	alt_3406_fdr	8	18	16	16	15	15	11	6	11	5
GCCCTGTTTTTTTCTG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCCGTCAACAGCG	alt_3406_fdr	29	40	48	37	55	27	44	30	51	34
AGGTCGGTCAGCTTGT	alt_3406_fdr	71	104	77	67	87	61	112	62	96	65
CTTGCCGAGGGAGTCT	alt_3406_fdr	64	88	59	54	74	55	80	59	74	62
TCGTACTCTTGTAGAC	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
GCTGATCACTACTTGC	alt_3406_fdr	10	15	6	7	13	5	14	3	11	8
GTTTTATCCACTTGTC	alt_3406_fdr	131	149	165	124	177	84	160	118	161	96
TAATCGGTAATTCGAC	alt_3406_fdr	68	73	81	57	75	60	86	63	88	62
CTACATTCAGCCGCGA	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTCAACCCGACG	alt_3406_fdr	10	25	12	15	8	9	15	7	15	7
TGGCGCGGCTGTTTTG	alt_3406_fdr	19	41	25	30	36	28	36	27	27	23
GCGGCTCCTTGTCCGT	alt_3406_fdr	17	18	15	11	11	20	29	12	19	9
GCTGATCTAGGTTCTT	alt_3406_fdr	4	6	4	7	12	3	11	3	12	2
GATCTGTAGTATTGAC	alt_3406_fdr	21	19	27	13	18	21	21	15	28	11
TCCATGAGTCCCGGTG	alt_3406_fdr	116	134	118	126	128	100	128	106	144	104
GGCTGTACCGATATCT	alt_3406_fdr	82	89	112	83	118	88	92	62	106	71
TAGGCTGTGGTATACG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
CAAATTATCTAGCTAC	alt_3406_fdr	9	4	14	7	6	6	9	9	7	9
CTATACGGCGACAGAG	alt_3406_fdr	0	0	0	0	0	0	0	0	0	0
AGATATAAAACCATGG	alt_3406_fdr	2	2	3	6	5	6	1	3	2	3
GGAACTTACGTGCCCC	alt_3406_fdr	19	20	25	25	30	20	31	18	29	16
TTGTGAAGACGAGTGG	alt_2913_RC	19	31	26	22	29	18	35	9	26	31
CACTCCGCTTGTCGGA	alt_2913_RC	72	155	98	101	127	92	147	101	141	87
TGACAAAGCGGGCAAG	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTGTGCACTGTA	alt_2913_RC	18	22	22	12	26	17	23	17	33	17
CCTCGTGCTCTACGAA	alt_2913_RC	75	162	92	82	137	65	146	90	128	86
TCGATGTATTTTGCTA	alt_2913_RC	22	28	16	21	27	25	31	13	44	32
GCGACACTCCCAGTAT	alt_2913_RC	13	128	15	16	173	10	162	9	200	9
CAGTTGTGTCGTATCG	alt_2913_RC	0	3	4	2	6	3	8	3	9	5
GACCACTTTGTCGATT	alt_2913_RC	5	6	8	2	2	8	2	6	1	8
CGGTTTCTGACTGAGA	alt_2913_RC	109	132	121	98	114	96	144	97	124	92
CGGTTACCGACTCATC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
ATACACGCATTCTACC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
ATCCTAGGCTCCATAC	alt_2913_RC	29	40	24	18	53	17	62	21	64	14
TTTCTTAAGGCGACTT	alt_2913_RC	34	39	30	21	33	28	42	36	45	28
GCGTTTTCCTATGCGA	alt_2913_RC	8	14	13	13	13	13	16	14	18	7
CTCACAGATATGTGCC	alt_2913_RC	14	13	11	10	15	10	20	11	18	8
ATTCCGGTTTTATGGC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTAGACTATCCC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
TATCAGCAGCCAATGA	alt_2913_RC	31	47	41	40	47	29	34	44	55	37
TTCATACTCGGCATAC	alt_2913_RC	0	0	0	0	1	0	0	0	0	0
GTTTGTATTTAGTTTG	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
GCAGCTCAATCTATCG	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
TAAACATTGCCTCCTC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
CGAGCTTAACTGCCTA	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
ACCTTATGCTGCGGGA	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
AGCGGCAATATTTATT	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
TCTAGATTAGTGGACG	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
GGTTCAAGTTATACAA	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
GATTTGGGTCGTGATT	alt_2913_RC	20	31	24	14	37	13	22	15	30	13
CACTTGGGCTACAGGG	alt_2913_RC	3	7	8	9	8	5	12	4	9	3
TAGTGGGTATACGGTG	alt_2913_RC	91	121	91	91	120	80	139	67	135	85
CATTATGTCCCCCTTC	alt_2913_RC	16	22	23	15	26	15	23	14	28	20
AACATCCGATCGCTGC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
CCTTCGCGTAAAGTCT	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
CCCCCGCGGAACTCTT	alt_2913_RC	11	21	9	14	22	18	22	7	30	11
TTCGGGACTATTAGAC	alt_2913_RC	23	35	42	26	40	27	63	32	46	21
GTTAGGACCCCCCACT	alt_2913_RC	88	90	113	97	102	86	88	77	96	80
CAGTCTCAACTCTTGC	alt_2913_RC	18	44	17	21	61	13	59	30	58	21
CGGGCCGACTTGAATT	alt_2913_RC	48	109	60	52	98	47	93	39	107	39
ATCGGTAGATTTCAGA	alt_2913_RC	37	37	38	20	31	23	46	25	40	25
CTCCCAACGAGGTAAG	alt_2913_RC	5	2	4	2	2	2	2	3	6	1
GACTCAAACGGGGTGA	alt_2913_RC	13	16	29	10	22	12	17	8	28	16
CTTGTATAATCATCGG	alt_2913_RC	5	9	8	10	14	8	13	7	10	6
GGTATGAGTGTAGTTC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
TGGAAAATCCGTTATG	alt_2913_RC	9	23	12	9	14	16	11	14	14	3
TTTGTAATACGCCCAT	alt_2913_RC	13	23	16	14	14	13	25	7	16	18
TAACCTCGGGGTAACA	alt_2913_RC	0	0	1	1	2	1	2	0	1	0
TCGAAATTCGGGTTCT	alt_2913_RC	27	40	30	34	38	34	41	22	38	29
TACGTTTTCGGTGCCC	alt_2913_RC	6	4	3	0	5	6	9	10	2	1
ATCAATCCGGATTTAT	alt_2913_RC	8	21	9	11	18	9	17	10	26	11
GTAGTATCGGACGTTT	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
AGGCAATCTAGAACAG	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
ACTTTTAGGGTGACCG	alt_2913_RC	13	20	36	19	39	19	33	11	22	19
AATTGGCAAATACACC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
CTAGTTTTCATTTCGG	alt_2913_RC	15	15	12	10	24	11	17	12	28	12
ATGAAGTACCGCTGGC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
CATCCTGCAAGACACC	alt_2913_RC	12	25	15	16	14	11	14	13	10	10
GTTGTATCGGACGTTT	alt_2913_RC	18	31	13	25	39	23	27	15	22	15
TCTGACGGTCTACGCC	alt_2913_RC	11	21	17	7	25	5	21	8	17	8
ATGCCATCCCTTAAAA	alt_2913_RC	20	47	42	37	49	23	45	26	56	26
ATTAGTAAGGCGTTCC	alt_2913_RC	59	77	61	40	66	54	92	38	71	64
ATCATTTTCTCTCCTC	alt_2913_RC	44	65	60	60	57	58	65	57	62	57
ATCGGATCAGGAATCT	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
GGTAACGCATCGCCAC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
CTAGAACTTGAAGCCT	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
ACCGGGAGTAGACTGG	alt_2913_RC	9	9	6	6	15	4	15	8	14	8
CAGTTCGGATTCAACG	alt_2913_RC	35	59	47	35	44	28	64	27	55	32
GTCATACTTATCAATT	alt_2913_RC	5	8	4	4	4	4	6	5	5	5
GATCCTGATTCCGTTA	alt_2913_RC	15	4	14	7	6	6	10	3	4	10
ATGCTAGAATATTCGA	alt_2913_RC	35	63	38	34	58	12	76	21	82	27
GCGTTGATAATTTCCG	alt_2913_RC	46	64	41	54	69	63	50	45	74	43
AGCATCACACAAGTCA	alt_2913_RC	2	7	5	5	5	7	9	2	12	1
CCCTGGTTTGCCTAAT	alt_2913_RC	8	13	12	6	8	3	9	4	12	5
TGCGGCGTGAACGCGT	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
ATAAGCGCGTACATCC	alt_2913_RC	79	89	89	89	94	76	106	78	101	78
GCGCCGCTGTACCGTT	alt_2913_RC	51	57	45	47	62	65	72	48	56	36
CCCTGTATTAATCGCC	alt_2913_RC	39	48	49	48	55	43	44	45	57	40
GTGTCGGATCCTGCTA	alt_2913_RC	10	27	18	13	27	20	34	11	20	13
CCTGCGAGCATACCAG	alt_2913_RC	2	2	2	3	5	3	4	2	5	2
CATGCTTACTGCGTTA	alt_2913_RC	35	46	36	28	43	34	41	22	48	43
AGATTGGTACCATTCC	alt_2913_RC	0	0	0	0	0	0	0	0	0	0
GTAACAGCCCGCAGAA	alt_2913_RC	4	9	4	4	3	2	18	4	9	5
CGCGTGATGCGTCAGG	alt_2913_RC	29	37	34	20	44	30	35	18	50	20
GAGCGTCACGTTATCC	alt_2913_RC	31	41	18	17	27	26	40	18	36	17
TAAATTCACAGATCCG	alt_2913_RC	34	36	33	34	40	30	25	44	17	34
TACAGGGTCGTGTGTA	alt_2913_RC	1	16	6	3	13	3	16	3	16	9
TGTGTCGTCTAATTGG	alt_2913_RC	1	11	5	2	10	6	8	1	5	11
GGACATGCCATAGCTC	alt_4649_upstream	77	44	85	83	44	89	48	58	38	59
AGTAATCTCTATGCCA	alt_4649_upstream	17	2	13	22	9	18	10	20	10	17
GATCGCATGCTGTCAA	alt_4649_upstream	39	25	58	45	28	39	19	42	31	35
ATGGCTACTCGTTATT	alt_4649_upstream	77	44	111	101	57	82	58	93	46	92
TTGCTTTGCCATAGTT	alt_4649_upstream	3	1	3	3	3	0	4	3	2	1
GTTTTATGAGTTATCC	alt_4649_upstream	295	133	323	318	155	257	182	243	159	224
TGTTATTCATAATTTG	alt_4649_upstream	29	13	50	37	16	28	16	35	25	29
CCCGTCCAGGGTTTCA	alt_4649_upstream	14	12	17	14	16	10	11	9	18	14
AGTACTCGGTAGTAAA	alt_4649_upstream	78	32	96	101	52	92	56	66	67	78
GCCGCTGGACTGATTT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
CAATGTCCCGGATGCA	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTAACCACGAATG	alt_4649_upstream	118	78	136	141	69	139	72	137	76	127
TTACCCATTCATTGTT	alt_4649_upstream	25	23	26	26	15	26	19	22	21	22
AGACACACTCCTGTGG	alt_4649_upstream	3	9	3	4	4	3	7	5	11	2
GCCATCTTGAAGTGTA	alt_4649_upstream	22	25	35	22	33	35	31	33	20	18
GTTATCCGGTCTCCTG	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTTTTCGCGTTTT	alt_4649_upstream	16	7	18	11	5	12	9	12	8	15
GGCATGTTGCCATCAT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCATGCTGACTTT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TAGACAGGGGCCTACG	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TACCCGATCGCATTGT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
GGGTATGGTCCGATAA	alt_4649_upstream	53	26	46	40	24	31	14	42	29	26
ATGTGTAACGAACCGT	alt_4649_upstream	29	21	50	22	13	30	15	19	23	24
TTGCTACAAGAGGACT	alt_4649_upstream	83	35	103	80	53	77	53	78	55	76
CACTCTGAAATATGGA	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
ATCCACCATTTACAAT	alt_4649_upstream	5	4	6	4	2	5	6	2	3	4
TGGCGTTTTCGGTATT	alt_4649_upstream	272	163	295	259	168	247	177	253	188	234
GGTGTATTGAATGCTC	alt_4649_upstream	59	30	57	49	37	49	24	46	39	42
GATTCACATATGCCCG	alt_4649_upstream	108	54	140	109	68	126	68	81	84	111
ACTCTTACGCAGGCCT	alt_4649_upstream	40	25	41	41	18	39	21	24	18	30
TTCAGTCCGAGTTTAC	alt_4649_upstream	27	20	47	34	11	31	9	14	14	13
CCTCGCACCACCTTCT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGTCTTGATTTGG	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
GGTGATGGCCGTCGTC	alt_4649_upstream	19	4	17	13	10	20	11	15	6	9
ATCGGTGATATTGAAA	alt_4649_upstream	9	4	8	7	4	10	4	3	6	7
TATGAAGGCATGGTCG	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
CTGTATACGGGACTGG	alt_4649_upstream	70	45	81	67	60	79	52	57	60	67
GCATCTCCTTGGCGTT	alt_4649_upstream	70	66	82	68	56	51	53	56	50	65
CATAGATAGCGCACCG	alt_4649_upstream	49	35	64	72	42	56	48	45	44	48
ACTCATAAGGAGTTTT	alt_4649_upstream	54	24	54	65	21	61	25	62	18	34
TATACCCAAGCAAGGA	alt_4649_upstream	89	63	108	121	53	97	61	91	70	101
TTAGTGTGAACGGGAC	alt_4649_upstream	2	3	4	4	4	0	3	2	4	3
GAGCTCTATATAACTT	alt_4649_upstream	13	5	15	19	7	7	5	14	11	7
CACTTGCCACAACCCC	alt_4649_upstream	45	42	59	52	51	48	36	54	35	55
CCGTTTGAGTCTCTCT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TATAGGGCCGCTAATG	alt_4649_upstream	30	15	20	28	18	31	21	20	17	29
ACGATCACGTGTTAAG	alt_4649_upstream	12	10	11	9	7	8	6	11	8	9
GATCTGACGACCCCTC	alt_4649_upstream	35	14	41	41	23	41	22	41	29	41
GATTTCTAGATTTTCT	alt_4649_upstream	4	4	4	4	6	1	5	7	6	4
CTCCCTGCCGTTTCCA	alt_4649_upstream	12	46	20	18	43	16	31	19	37	11
GAAACAGATGCGTCAC	alt_4649_upstream	177	98	232	210	112	201	99	148	92	179
CACAACGCTCGCTTAA	alt_4649_upstream	14	8	10	12	9	7	3	9	15	7
GCCTCTAGTACGGGAA	alt_4649_upstream	17	7	15	19	7	20	7	12	11	11
AATACCCATACTGTCC	alt_4649_upstream	168	126	197	182	138	174	119	162	138	166
ACCCGCGCAAAATATT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTGGATCACGTCT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TACTGGCCATCCGAAA	alt_4649_upstream	24	19	33	29	7	33	18	26	17	26
CCAGGCTACCCTAGTT	alt_4649_upstream	74	83	123	106	118	99	109	85	118	90
CATGGCGTAGATAGCT	alt_4649_upstream	141	59	93	120	48	100	38	101	65	95
TATTTCTATTGTGCGC	alt_4649_upstream	83	50	124	82	63	75	61	77	82	75
TTCTTAGACTCTGAGG	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
AATTGGCCTGAATCGC	alt_4649_upstream	50	24	40	49	18	30	21	40	21	36
GCTATTGGGGGGGTAT	alt_4649_upstream	103	62	152	111	68	130	58	121	80	126
GCAGTCTACCGCAGAT	alt_4649_upstream	48	52	56	53	42	37	43	41	51	39
TATAACGCATCTTAGC	alt_4649_upstream	50	46	60	61	35	45	49	59	43	47
CTATTTCCTTGTTGGC	alt_4649_upstream	56	43	81	81	30	49	40	56	35	54
GTCTTGCACACTAAGT	alt_4649_upstream	21	16	17	17	9	22	11	9	5	19
CTTTCTCTTTTCCAGA	alt_4649_upstream	4	6	5	8	2	4	4	7	2	5
TAGGGTGCCAGTTTAA	alt_4649_upstream	24	25	27	32	15	18	17	37	19	24
GTCTAATGTGAGGTGT	alt_4649_upstream	48	46	78	64	56	59	37	59	36	56
CTTGCTTCTGGACCGC	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGGCGTCGCGGGG	alt_4649_upstream	34	18	28	26	23	23	15	19	17	22
CTGCGCAGGTTATCGA	alt_4649_upstream	151	58	161	126	75	117	78	107	78	112
AATAACGGCATATTGA	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTATATTTATAAG	alt_4649_upstream	32	12	29	26	29	20	26	25	20	25
AAAATTCGTGTTGGCG	alt_4649_upstream	190	117	228	187	91	171	122	179	109	159
AGCGAGAGTGCGCACT	alt_4649_upstream	56	24	75	57	21	59	33	42	37	33
CTAAATTGAGATGAAA	alt_4649_upstream	62	28	58	51	39	65	33	61	47	58
TGAAGTAGGACATTGT	alt_4649_upstream	9	4	20	26	16	20	8	11	10	18
TGGACACGATGAGTCC	alt_4649_upstream	77	58	100	76	30	72	55	55	54	70
GTCAATTGCTCGTTCA	alt_4649_upstream	101	66	115	129	62	111	87	97	87	100
TCGCCTTTGATAGAGT	alt_4649_upstream	33	30	43	47	39	38	21	36	45	29
GTGGTTCTCGCGCATC	alt_4649_upstream	43	35	75	54	20	38	35	42	30	45
TGTACTATGAGGAGTA	alt_4649_upstream	81	49	81	69	45	55	47	72	31	57
CGAAATCGATACCCAA	alt_4649_upstream	243	181	303	288	164	245	167	242	190	227
CGCGCTTCTCTTAGCA	alt_4649_upstream	37	26	46	46	21	31	25	35	24	28
GCCTTTAATACACCCC	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCTTGATAGGAAC	alt_4649_upstream	54	55	68	67	46	45	50	83	35	49
ATGGTCTTCCTCCTCT	alt_4649_upstream	29	5	28	28	16	22	7	25	12	9
CGAGTCCCCCATTGTT	alt_4649_upstream	83	59	98	83	49	85	46	85	59	75
CTTCCGTTCGTGCTTT	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTAACTTCCAAGG	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCACCGTGTTTTG	alt_4649_upstream	14	18	25	24	11	14	18	17	16	16
TCAGACTCAACAATAC	alt_4649_upstream	33	46	61	50	44	37	62	56	55	43
TGCGCCTCACCGACAC	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGAGTCAAATTTA	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTCGAACCCGTCG	alt_4649_upstream	0	0	0	0	0	0	0	0	0	0
TATATTCCATAATGGA	alt_5742_new	3	4	4	2	3	7	3	9	3	4
GTATGATCACATGCCA	alt_5742_new	44	48	61	65	59	46	44	60	47	52
GGCGGAGTTTGTCGTG	alt_5742_new	0	0	0	0	0	0	0	0	0	0
CCTGTGCTATAACTCC	alt_5742_new	0	0	0	0	0	0	0	0	0	0
CCGAGCTAGATCTGAT	alt_5742_new	0	0	0	0	0	0	0	0	0	0
GTACCACGTCTCGTGG	alt_5742_new	0	0	0	0	0	0	0	0	0	0
ATGTCGGGTTTCTGCA	alt_5742_new	109	71	128	104	85	91	71	96	84	96
CTTCTGCGGTCCCCGA	alt_5742_new	0	0	0	0	0	0	0	0	0	0
GATTTCTTTGATAAAA	alt_5742_new	17	10	14	7	7	17	5	8	8	11
ATGTTAATTTGTAAGC	alt_5742_new	1	3	9	5	5	2	3	1	6	4
GTTAATGCTTGCCTAT	alt_5742_new	10	13	8	10	13	8	9	10	11	7
TAGGGCTCAGTTAAGA	ref_5742_new	639	533	764	689	535	593	506	637	594	582
GCATCCCAGCTGTCTA	alt_5742_new	23	23	19	17	26	20	25	15	14	20
TGAGCTTACTCTAACA	alt_5742_new	39	31	58	55	35	52	26	40	33	30
CAATGTATGCGGACCG	alt_5742_new	27	32	35	43	37	35	37	31	37	37
AGCCGGTTCATGCTTC	alt_5742_new	2	2	1	3	5	2	2	2	3	1
TGCTGCATCTTGGAAC	alt_5742_new	78	87	97	117	79	69	86	99	77	64
TAAAGCTTGGCTAATC	alt_5742_new	0	0	0	0	0	0	0	0	0	0
CACATTGCCTCGAAGT	alt_5742_new	20	25	35	32	23	19	20	24	31	21
AGAAAAAGTGTAATAC	alt_5742_new	0	0	0	0	0	0	0	0	0	0
TAGTTTCATAACACTC	alt_5742_new	17	12	17	19	10	15	16	18	11	17
AAACTGTCCAAACATA	alt_5742_new	14	13	20	8	10	10	9	12	16	16
ACCCGATACTTATTGT	alt_5742_new	25	22	18	31	24	18	19	17	18	18
GGCGATTCGGGAGCCC	alt_5742_new	0	0	0	0	0	0	0	0	0	0
TTTACTAGAGGTGTGC	alt_5742_new	0	0	0	0	0	0	0	0	0	0
ATCTGTCGTGTGGCAG	alt_5742_new	0	2	4	0	1	1	2	3	0	1
ACACGCTTCTTGGGGT	alt_5742_new	49	57	54	41	29	53	53	53	36	47
CGACGTGGGATTTCAG	alt_5742_new	16	24	18	16	17	18	10	19	19	9
CATGGTGTTTTTACGT	alt_5742_new	23	11	28	18	26	23	17	18	23	12
GTTTAGATCGGGCTAT	alt_5742_new	38	19	33	32	19	40	16	18	22	28
TTATCGAGCCAGGAAG	alt_5742_new	77	56	120	80	77	81	72	82	79	79
TAATCATGCGAGCCTC	alt_5742_new	20	33	31	36	29	30	28	21	34	29
ACGGGGAGTTCCACAA	alt_5742_new	16	11	20	15	6	10	14	18	15	16
TCACAGCGGTTCCCGA	alt_5742_new	0	0	0	0	0	0	0	0	0	0
CCGTCCATCCCTTCTA	ref_5742_new	17	15	14	12	28	7	20	11	37	9
CACCATAGGTTTGCCG	alt_5742_new	46	26	73	45	31	47	43	50	40	61
CTACGATGGTTACAAG	alt_5742_new	0	0	0	0	0	0	0	0	0	0
ACTTTAGCCAATTAGA	alt_5742_new	61	39	58	51	51	51	55	59	45	40
GTCTGGTTCAGAAGGC	alt_5742_new	0	0	0	0	0	0	0	0	0	0
CAGGTTTGTCAACCAT	alt_5742_new	0	0	0	0	0	0	0	0	0	0
TTCGTTCGATGAGACC	alt_5742_new	0	0	0	0	0	0	0	0	0	0
AGGTCATTCAGCTAGG	alt_5742_new	15	9	16	5	6	8	4	6	3	7
GAGGTCTTCTTCTATG	alt_5792_new	146	153	197	178	140	133	150	138	146	129
TGCTGTTCGGCCATGT	alt_5792_new	88	78	93	78	86	89	95	72	83	65
GCAGAGGTTCGCCTGA	alt_5792_new	44	57	62	47	49	40	33	40	40	31
ATCATGATCAAGGCAT	alt_5792_new	60	57	81	78	72	75	76	52	66	58
GAGCGTAAGGTCTGGC	alt_5792_new	29	29	33	37	28	32	48	32	33	26
CCGGCAATCCTTTTCA	alt_5792_new	0	0	0	0	0	0	0	0	0	0
AACCCAAACGCACAGC	alt_5792_new	50	38	57	55	48	41	41	41	41	47
CTCGTTTAGTTGTTCG	alt_5792_new	10	35	20	20	23	25	28	24	27	14
GTAAATACTTTGCCTG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TTAAATGATTACTTTC	alt_5792_new	43	32	43	36	30	34	35	31	35	30
TATCTTTATCTGGTGT	alt_5792_new	10	12	15	14	13	13	11	12	8	6
ATGGTGTCGGCGACGC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GTATGCTTTTCCGCCT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
CGCGGCCCATGCTAGG	alt_5792_new	31	26	34	30	27	25	21	23	22	19
CATATATTTGTATGCA	alt_5792_new	85	63	83	80	54	58	83	61	62	62
ACATACGACCTAAATG	alt_5792_new	51	34	69	57	41	55	48	41	56	36
CCGTGTTTTCACGGGT	alt_5792_new	17	20	23	32	20	21	23	25	39	15
CCAGGATTAGCCGCTC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
CATGATTAGTCAGAGC	alt_5792_new	6	8	5	8	6	8	6	10	4	4
GTCACTTACATTCTAG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TCCGCAGGCTGGTCCG	alt_5792_new	1	0	1	0	3	0	0	1	0	1
GTTGATCCGGTTACGT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
CTCTTGGGTAGTGGTA	alt_5792_new	5	3	7	4	5	8	2	5	9	0
AGCCTCTTGAAAATCC	alt_5792_new	10	6	12	8	13	7	10	9	9	4
GCCAATGTTTCTCATT	alt_5792_new	51	68	42	61	50	53	55	67	73	41
TGTAACATTCTCGGTT	alt_5792_new	28	12	15	19	24	16	23	16	33	9
TCGGTACCGAATCTTG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
CGATTGTTCATCACAG	alt_5792_new	28	25	35	17	20	20	28	15	28	14
ACGGTAGTTGCCAGGA	alt_5792_new	5	14	14	11	13	9	13	11	20	8
ATTTATCCTACACGCT	alt_5792_new	28	34	35	28	25	16	15	25	29	32
ATGCCGTTAAATTGTC	alt_5792_new	150	138	170	172	142	139	130	148	148	123
TCACTAACCATCTCAT	alt_5792_new	47	38	75	63	46	41	50	53	40	61
ACCCGCCTACATCAGT	alt_5792_new	7	5	6	13	7	6	11	11	9	8
CGGTGAACTGTATAGT	alt_5792_new	34	51	33	46	44	28	38	39	48	38
TCTGCGGGCTATTTTA	alt_5792_new	71	65	101	72	79	72	85	84	80	68
CATTGTGAATTACACG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TTTGCGTGGCGTAGCC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TTTTCACTTGTCCCTT	alt_5792_new	11	23	20	13	23	16	15	14	17	14
CTCTTCTGATTCGCAG	alt_5792_new	46	49	57	44	41	35	36	36	44	46
CACTTACTAGGCCTCC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
CGTACGACAATGTTCT	alt_5792_new	26	21	20	20	17	24	19	18	21	22
TTCTCGTATCTACTAG	alt_5792_new	29	27	34	31	32	27	43	30	33	32
GTACTTCGTAATTGTT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TCCTAGTGCTCAACAC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
CATTAGAGTCCCGGAT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TCAGAATCGGTTGTCT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TGGCTTTGTAGCGTGT	alt_5792_new	55	64	64	60	60	54	61	44	66	56
GTGACATTACGTGCGG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GGGGCTGACCCTTACT	alt_5792_new	40	39	44	23	41	23	42	36	34	35
CATCGTCTCTGATGTT	alt_5792_new	7	3	12	6	9	9	7	4	6	6
AACGGTCGCGCTTTGT	alt_5792_new	23	18	17	27	21	6	15	12	30	13
TATGGCGTTTACGTTG	alt_5792_new	17	18	12	6	15	19	13	16	20	14
TCGGAGCCGGAATCCA	alt_5792_new	19	32	23	23	22	16	25	26	24	32
AAGTTTAAGTCGGATT	alt_5792_new	35	11	30	27	20	23	29	23	10	18
ACTTCCCGGGCTCATG	alt_5792_new	42	50	66	49	66	56	65	47	61	43
GTTAAAACTTTGCCTG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TTCCATGCAGCGTTAA	alt_5792_new	0	0	0	0	0	0	0	0	0	0
CCACAACTGAAGATCC	alt_5792_new	19	27	16	21	28	13	38	29	24	11
AGCTGGCCATATGTCT	alt_5792_new	8	11	15	12	11	9	13	11	12	12
GGTGAGAAAGCAAGTA	alt_5792_new	15	7	13	14	5	12	9	15	11	12
ACACGCTGGAGGAGGC	alt_5792_new	20	18	29	33	19	18	10	16	24	19
CCCCCCCGCGTCGTAC	alt_5792_new	26	26	30	23	37	25	33	23	24	20
CAATCTGTCTCCGGCG	alt_5792_new	41	46	44	35	64	41	31	51	27	38
GAGGCGGTGTGGTCAA	alt_5792_new	0	0	0	0	0	0	0	0	0	0
ACAGCGTTCGGGAACT	alt_5792_new	85	64	89	80	93	57	60	100	60	71
TTATAAGCGAGTACCA	alt_5792_new	36	19	31	30	28	33	34	26	35	22
TGTATTACACAGATGG	alt_5792_new	117	91	192	155	150	127	135	130	151	101
TCAATTTCCTACCAGC	alt_5792_new	34	27	39	20	22	29	21	26	26	36
ATTGTAAAGCTTACGC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GCCTAGCAGCGTTTGG	alt_5792_new	7	21	11	6	10	8	9	15	10	7
ACCAATATGACCTTCA	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GGTCCTCTAGCCGGGG	alt_5792_new	37	27	29	41	35	36	28	25	24	20
AGATCTCTGTCACGAG	alt_5792_new	42	36	50	53	61	36	46	37	49	39
TTGGGAATGTAGCGTA	alt_5792_new	12	11	11	12	11	8	10	10	21	8
CTCGGTACTGGTTACT	alt_5792_new	22	15	18	13	18	20	19	20	20	16
TCCGTTACAGCTCGTG	alt_5792_new	6	8	12	10	10	5	14	13	10	10
TTTATTGGCGTTTCTC	alt_5792_new	65	32	64	54	59	59	54	61	62	44
CTGAAGCACATCTAAC	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GTACGGTCCATCCGTG	alt_5792_new	44	19	27	30	29	32	36	23	28	22
ACGTAGTTGCGAGTTA	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TGTGCCTCTAGATCTT	alt_5792_new	83	120	97	80	104	96	113	95	117	75
GCAAAGTTGCAGATGG	alt_5792_new	47	54	61	70	48	69	66	51	48	40
CTACCTGATCAGCCTA	alt_5792_new	4	6	3	5	2	4	3	7	6	2
GTCCACCTGCAGCTTA	alt_5792_new	22	11	12	14	28	15	22	11	17	17
CATCGATTCTACTTGT	alt_5792_new	9	13	10	9	5	6	14	3	15	7
CACGATAAGGACCGAC	alt_5792_new	11	7	9	13	13	9	7	3	9	16
TTCTTGTCTTTCGGCT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GCGTCTTTCCAATAAC	alt_5792_new	4	13	12	10	2	14	7	11	8	4
TTGCTCTAGAAGTTTG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GCCGCATGACAGAATT	alt_5792_new	56	52	82	71	60	56	56	48	53	64
AGTGGCTACTCTTGGC	alt_5792_new	33	40	48	43	35	49	37	50	36	31
CGTCTTAGTAGTCGGG	alt_5792_new	154	168	184	178	173	137	169	162	195	138
TAGGCTCCATGAGTTT	alt_5792_new	9	15	17	11	17	1	14	12	9	8
CCCCCCGCGTCGTACG	alt_5792_new	0	0	0	0	0	0	0	0	0	0
GATCGCCACTTGCAAG	alt_5792_new	14	16	17	18	18	8	9	12	16	8
CCAGGTGCCCTACCGT	alt_5792_new	38	30	35	30	40	25	24	30	42	25
GCTTTTCTTATCGGAG	alt_5792_new	63	68	61	69	69	65	45	77	63	55
ACAAGAAGTCGGGATA	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TTGTGCGTTATGAACA	alt_5792_new	76	78	99	69	96	61	84	84	98	63
GGGTACATTCCGTCAT	alt_5792_new	0	0	0	0	0	0	0	0	0	0
TGGCCTCTGTACGCGC	alt_5792_new	42	54	69	53	49	53	59	59	67	64
GCCGGAAATCTAGAAC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
GAGTTCTTAAGGATCC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TAGTGTCTGGCACTTG	alt_3795_missing	10	21	12	4	21	7	18	4	20	3
GGTTAGATCCTGGTTT	alt_3795_missing	5	11	5	2	12	7	6	7	12	5
GTTCTTAAGGGTGGTA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
GATCTTCACCATGGCT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
AGGTCCATCAATTGCG	alt_3795_missing	3	3	5	0	1	1	3	0	2	0
CATTAAAGCGGTCGGC	alt_3795_missing	19	29	7	12	30	14	23	11	39	12
GTTACCATTCTAGAGA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TATTCCGTGATTGTAC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TGAACAGAGCAGGTTT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TTCCCCTATCAGACCT	alt_3795_missing	13	66	14	11	67	12	43	17	69	14
CCGTTCGGATGAAGAT	alt_3795_missing	12	29	18	10	26	14	24	11	26	8
TTCCTTTTTCTTTAGC	alt_3795_missing	4	3	5	4	8	3	9	0	10	5
TTGGCACCTTCTGGCC	alt_3795_missing	42	88	48	41	109	38	123	36	149	39
ACCCCGTAATCGCATC	alt_3795_missing	14	28	17	7	24	17	30	10	40	7
AAGAGTCCAAAACTAA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TCTGTGTGGGTTAATT	alt_3795_missing	10	16	10	7	22	13	20	12	33	8
CATTATTGGATTGCTG	alt_3795_missing	32	59	22	32	73	23	86	28	76	28
TCAATGCCCATTCGTG	alt_3795_missing	6	25	11	9	23	11	19	8	39	3
GGTAGAACAGGTGGGC	alt_3795_missing	7	30	31	15	35	21	38	20	29	8
TTACCTTCGGGCCGCA	alt_3795_missing	4	6	3	4	16	1	11	7	20	7
GCCTCCCTCGCCGGGT	alt_3795_missing	15	120	17	18	113	23	119	20	103	15
GACTTTTGCACGTGCT	alt_3795_missing	3	15	6	2	12	7	24	5	23	1
TATACTTTAACGTCTC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TTTACATCCCCCCTAA	alt_3795_missing	24	31	27	15	41	11	44	20	35	19
ATTATTTCATGTTCCC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
GCGTCGTAGGTATCTT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
GCCGTATGAATGGCTT	alt_3795_missing	10	16	11	9	28	13	18	14	28	9
CCTTAGCTAGGGGAGA	alt_3795_missing	6	15	13	5	15	12	22	3	24	14
TTCCGCCTTTTTGCAG	alt_3795_missing	12	17	14	6	11	6	22	3	18	8
TTACTGCGGATGATTT	alt_3795_missing	12	13	10	9	25	11	14	16	27	7
TAATGATTATGGCTCA	alt_3795_missing	10	21	10	8	17	12	34	4	35	14
TCTTGTCCCAGCTCGA	alt_3795_missing	47	108	55	49	101	47	109	39	118	44
CTGCTCCCTTGCTACT	alt_3795_missing	21	45	27	21	45	24	41	18	39	24
TAGAAGCTCAACGGGT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TCTTATAGAATTATGT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
CAGTCCTTATGCTCGC	alt_3795_missing	5	15	1	1	11	4	7	4	15	4
TGATTGTCGCCCGCAA	alt_3795_missing	7	9	12	11	21	5	20	8	25	4
ATTACAGTTCTCCTCG	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
GTATCCGGAACCCCGA	alt_3795_missing	2	16	9	8	21	2	23	9	13	7
CGGCTGGTTTTCAGCC	alt_3795_missing	8	26	6	6	17	8	28	7	20	8
CTTCTACTAGCGGCCC	alt_3795_missing	24	45	27	23	56	25	47	22	47	23
GTGTTTTCCCAGTTTT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
CTCCCGATTTATATTA	alt_3795_missing	12	23	16	9	33	7	32	9	33	12
GGCGTCCAAGCACATC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
GGTGAAATTTGAATGT	alt_3795_missing	10	31	11	7	22	10	19	9	13	14
ACTGCCACGCGGTTCA	alt_3795_missing	39	79	32	37	82	36	104	23	100	25
TACGACCGAGGTCCGC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
CCTTACTCTGTGACTT	alt_3795_missing	6	41	11	5	30	2	37	7	34	4
TAAGGAACGTTTTTTA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
AACTGATTCAACAGCA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TAACGCGCTTTGTTAG	alt_3795_missing	30	64	29	41	58	32	57	24	45	23
GGAGCAACCGCAGGCT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TAATGGTATATGGCCG	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TTCATCCATACTTCGA	alt_3795_missing	4	1	3	1	4	2	4	0	1	4
TTCGTAATCTCTTCCC	alt_3795_missing	28	48	20	14	48	21	44	22	39	14
AGGGTGCGCTCAAGTT	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
CTTGCTACTTCTAGGA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
ACGGTGGAATTGGGCT	alt_3795_missing	33	95	45	25	91	41	74	26	87	33
CACAGCGAGTTCAGTT	alt_3795_missing	6	12	8	8	24	6	25	9	12	6
ATTTAGAGATTACTTC	alt_3795_missing	9	5	5	4	1	2	12	1	10	7
CGCTATCCACTAATGA	alt_3795_missing	7	32	13	15	35	11	24	6	30	6
TGAGATGTTCGTTTTT	alt_3795_missing	20	44	34	19	42	28	41	21	50	17
CGTACACAAGACTAGG	alt_3795_missing	15	33	17	7	35	11	33	12	42	7
CCACATGGCAGCTCGC	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
ATGCTTAGGACGCCCG	alt_3795_missing	11	24	11	10	11	10	31	18	22	14
TGGTTCGTTCACCTTG	alt_3795_missing	9	11	2	4	22	3	17	3	16	2
AGGTCCATTCATAGTG	alt_3795_missing	17	40	29	15	60	18	52	24	33	12
CACATGTTTGTACAAT	alt_3795_missing	4	20	14	7	20	11	11	9	30	3
CTTTAGATTCATGTTG	alt_3795_missing	8	18	8	3	13	4	8	6	8	1
TTCGAGCATGTTGCCA	alt_3795_missing	0	0	0	0	0	0	0	0	0	0
TGAGTCCAGCGTCGGT	alt_3795_missing	14	25	14	12	24	10	23	16	29	12
GGGTTTCCTGAGCTAG	alt_4632_fdr	52	61	64	60	49	53	71	64	54	56
TGGACCAGGGTAGCCC	alt_4632_fdr	85	93	124	124	79	67	98	109	102	85
TGATTACCAACGTGTC	alt_4632_fdr	30	23	22	36	21	25	29	28	35	28
CCGTGGCTGGTGCAAT	alt_4632_fdr	31	47	45	38	40	32	54	26	47	34
TCTTTAGCTCTGCTGT	alt_4632_fdr	166	309	281	215	273	188	245	178	256	173
GGTAAATTTACTTGCA	alt_4632_fdr	571	503	711	604	560	535	477	573	539	525
TTGACTGTTTAATTAT	alt_4632_fdr	145	123	156	129	137	97	137	98	138	108
GATTGACTCAACTATT	alt_4632_fdr	58	42	71	59	47	45	54	37	64	48
TGGCACTGCTTGGTAG	alt_4632_fdr	13	4	12	9	9	9	8	4	8	1
TGGCTCCTATCGCTCG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTAACTTCCTCTTTGA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGATCGGACGTCC	alt_4632_fdr	19	15	11	16	12	28	15	18	11	12
AGGTTTACGAGTTAGG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCTAATATTAATC	alt_4632_fdr	9	8	9	14	12	8	10	9	6	10
CGTCCTAACGCTACCG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
AACGGATGTTCCATTG	alt_4632_fdr	6	17	25	18	19	9	19	19	12	12
GTATTCCCTGGATGTC	alt_4632_fdr	36	32	25	31	28	31	27	21	25	26
TTTGAGCAAATTTATA	alt_4632_fdr	15	7	19	15	11	14	13	18	10	10
AATTCCCCGCTGCTTA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
CATGCTAGACCTTTCT	alt_4632_fdr	17	17	15	13	17	9	13	11	15	12
GCACTCATATGCCAGA	alt_4632_fdr	46	35	64	56	57	45	46	55	44	43
CAGTGTCGTTACCTAC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCTTCCGTCACGC	alt_4632_fdr	24	23	24	20	18	19	16	16	29	22
GTGTCTAGCGAAACAT	alt_4632_fdr	21	16	24	23	22	24	21	15	34	19
AACTCTCGCTTCAGTC	alt_4632_fdr	5	14	5	7	7	9	6	9	11	10
GAATAATTCCTTGCCA	alt_4632_fdr	10	6	11	11	8	14	9	11	16	7
CCATGGCGACCCGGTC	alt_4632_fdr	10	5	6	10	5	7	11	6	4	4
ATGCAAAGCGGAGGGA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GCTACCTTTACGCTGT	alt_4632_fdr	35	38	61	47	31	35	36	34	29	26
CATCACTGACTGCCCG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
CGCTATCGCTTTTTTT	alt_4632_fdr	82	76	105	82	72	71	69	79	64	76
GACTTAAGAGCTAGTC	alt_4632_fdr	33	87	49	40	82	39	80	41	77	47
CGCCCCGTCGCGCCCC	alt_4632_fdr	3	5	5	4	4	3	5	0	5	2
TTGCTCATCATATACC	alt_4632_fdr	3	9	4	8	7	6	9	7	5	10
GATGCCTCGTTTCTGA	alt_4632_fdr	51	39	48	49	45	40	30	45	53	38
TTATGAAGCCCGGTTC	alt_4632_fdr	8	12	13	11	9	7	11	9	4	5
CGGATATGTATACCTC	alt_4632_fdr	6	40	13	18	24	13	25	20	38	13
GGCCAGCTCACCTCAA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCGGGCATTTGGC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
CTAATGAGTATAATGC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
AACTCACAACCCGTCG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TACACGCTCATGGCGC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCACCAGACGATTGGC	alt_4632_fdr	111	134	129	86	149	103	151	109	135	89
GCAACTCCCGATCCTC	alt_4632_fdr	30	35	53	28	41	38	28	35	32	25
CGCGTTTTGGTGTCCT	alt_4632_fdr	21	19	24	30	30	20	23	18	22	22
TTCTGTAGGGGTTGGC	alt_4632_fdr	12	12	11	9	5	6	15	13	6	8
TCGCACGAGGATCGAT	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCCACCTATTGGAGCC	alt_4632_fdr	10	19	19	22	30	11	20	11	29	9
CCATCATCTTTGAGAC	alt_4632_fdr	6	1	4	2	1	1	3	0	1	3
GTGCGCTCTTCCAATT	alt_4632_fdr	4	6	5	5	6	3	7	3	6	4
TACTACGGACCAAGCT	alt_4632_fdr	20	22	35	23	32	24	33	27	26	35
GGGTCCGTCGTACCCG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGTGATTTTTCGG	alt_4632_fdr	23	28	31	25	11	25	27	21	16	21
CGGGTACATGTATATG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGTTACTAATGTA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTCAATCAGTATG	alt_4632_fdr	15	41	24	20	26	26	21	23	30	13
CCTTCCCCCATAGACT	alt_4632_fdr	35	28	35	33	22	24	26	28	21	22
GGGCCTGATTCGCCGA	alt_4632_fdr	354	327	457	410	299	354	333	364	305	311
TTGCACCGTGTTTGTA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GTATGCGCTCGATTGT	alt_4632_fdr	25	43	33	29	32	24	34	28	40	26
TGGTTTCTGGAACGCA	alt_4632_fdr	69	92	84	97	92	89	78	87	94	65
CATATCTTTGTGTGGC	alt_4632_fdr	29	39	32	43	31	22	34	36	33	42
CTGAGCAGCAAGTTAA	alt_4632_fdr	32	28	37	40	32	26	47	26	38	24
ACGAGCGGTCAATACT	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
CACGTGCGAAATAGTG	alt_4632_fdr	51	66	59	49	50	56	58	45	65	45
CGGAAGATACGCTTTT	alt_4632_fdr	6	0	3	1	1	0	7	0	1	0
CTCAGGCGGGGCAGAT	alt_4632_fdr	5	13	8	3	8	8	7	9	7	7
TAGGTTGCCAGGCCAA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGTATCCATCTT	alt_4632_fdr	55	55	79	51	42	64	70	66	54	41
TTTCTGGGTAGTTCGA	alt_4632_fdr	434	395	546	455	373	431	405	371	407	380
GTCTTGGTACAGTCCC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTGGTATTGCGTT	alt_4632_fdr	38	32	27	40	29	39	45	33	29	29
AGCGGTAACCGCAAGA	alt_4632_fdr	6	9	3	3	3	3	3	2	4	2
AATGTGACTGGCATTC	alt_4632_fdr	19	19	8	10	17	12	12	8	12	8
ACGTCACCAGCCCTGT	alt_4632_fdr	5	3	0	2	2	1	0	3	2	4
TGACGGATCTCGTTAC	alt_4632_fdr	81	62	102	88	86	77	72	65	69	60
CAGCTAAGGACTAGCA	alt_4632_fdr	203	217	263	217	184	198	222	193	208	169
AGCGTGCAACCCTGGC	alt_4632_fdr	0	3	0	1	2	0	2	3	0	0
AGCATAATCCCTACTT	alt_4632_fdr	66	48	71	64	41	52	63	49	47	48
TGATAGGTTCGCTCCA	alt_4632_fdr	5	9	7	11	4	8	9	8	3	6
CTCCTCCGGTCCTCGG	alt_4632_fdr	20	26	28	17	30	19	32	9	41	17
TGTCCGCCCCGCGTCT	alt_4632_fdr	29	12	25	17	15	17	16	24	17	23
ATCATTTTCCTGACGC	alt_4632_fdr	44	57	56	51	56	42	58	36	51	33
ATTTAGGACTTGTCGC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TGACGTTTCTTATTGT	alt_4632_fdr	4	2	11	4	5	5	11	9	7	6
AGACGTCCTGCACAGA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TACCCCGAATGCAAAC	alt_4632_fdr	22	46	44	33	57	34	54	20	52	23
TATGATATTTAAGGCC	alt_4632_fdr	92	85	87	80	80	86	94	101	87	85
TTCCTGGTGACCGATG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
ATTCAGAGCACTCTTT	alt_4632_fdr	27	19	53	38	49	48	43	45	41	42
AAGCTGTTGTCTCTTT	alt_4632_fdr	2	4	1	5	2	3	3	1	1	2
CATGTGCTGGCATGGC	alt_4632_fdr	49	58	46	43	56	58	51	59	57	37
CCATTTCTTTGTTAAA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTGTAGATGACTC	alt_4632_fdr	15	10	23	16	18	18	14	13	15	19
GTTAGGCTTCGTGCAG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCGTTTTCGATTA	alt_4632_fdr	34	44	59	60	60	29	66	39	58	42
ATGATTTTTCCGTTCT	alt_4632_fdr	56	24	74	67	38	52	30	69	33	56
TGGATCAATCATCGTT	alt_4632_fdr	94	78	130	133	112	82	79	119	139	103
CCGTGATACGCCTGTA	alt_4632_fdr	7	16	8	12	17	9	17	16	18	15
CGTCGAAGTCGTCGGC	alt_4632_fdr	7	7	7	2	6	4	11	5	12	7
GCTCCTGTTCGGATGT	alt_4632_fdr	71	60	75	62	58	52	75	71	67	63
TGGTGTCATGTTGCAC	alt_4632_fdr	62	49	65	43	57	36	51	44	59	55
CGATTAATTCTCGCTC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TACACAAGGGTCCTCT	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GTTAACTATTTTCACG	alt_4632_fdr	40	19	46	39	29	26	30	30	41	26
ATGTCTGTATCTTAAC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTTCTACGGGCAG	alt_4632_fdr	6	5	9	7	13	7	11	10	8	11
CCCTGTACTCGTACAC	alt_4632_fdr	21	13	16	8	11	10	7	11	19	8
AAGTCCGCCATATCTC	alt_4632_fdr	6	4	6	6	8	10	5	7	3	4
CCCGAGGTCGCGCCCT	alt_4632_fdr	11	9	14	13	13	10	17	7	10	13
GAGGATGCGCGGGTAT	alt_4632_fdr	31	24	37	35	20	36	27	23	23	36
CATACTCAGTTGTTAG	alt_4632_fdr	46	46	46	45	51	43	42	37	60	26
ACCTGGTATTTTGTGT	alt_4632_fdr	129	107	146	142	134	111	146	110	163	92
CCTCGATAATCCCGCT	alt_4632_fdr	10	3	4	10	5	9	4	6	4	13
TGTGTATTTAGCTTTC	alt_4632_fdr	37	23	30	29	31	32	36	22	33	29
GCTCGGGTGTGGGTGC	alt_4632_fdr	78	62	80	73	73	62	74	68	62	44
GGGTTCCGTGCCTGTA	alt_4632_fdr	9	11	12	6	15	14	15	2	20	7
GACGTGTAGTGTCCTC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GCATTTATGTAAGGGC	alt_4632_fdr	10	16	17	13	16	11	16	8	13	7
AGTCCTCGGCAGTTTT	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGACTTCTGCTGC	alt_4632_fdr	30	23	48	38	37	30	32	32	28	23
TGTCCCAGTCCTTACA	alt_4632_fdr	1	1	6	6	1	4	3	1	2	1
CTGGCTACGCTCAGCT	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GTGAATAAGCGGTACG	alt_4632_fdr	17	12	14	14	12	7	14	15	10	11
CGGCTGATATGCTGCA	alt_4632_fdr	43	40	49	38	37	36	43	46	44	46
ATCACGCAGGCGCATA	alt_4632_fdr	57	59	80	84	60	76	60	66	64	57
GGCTATAGGTTTTCAT	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TCGAGATGTCGGGCAC	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCCCTGTCCGAAA	alt_4632_fdr	11	8	20	17	16	15	7	17	18	15
TGCACAGCCCATTACA	alt_4632_fdr	18	29	26	27	35	16	28	15	26	23
TACAACGTCTATAAGA	alt_4632_fdr	3	5	3	6	4	4	6	0	2	4
CGGATTCTTAATCTCT	alt_4632_fdr	90	79	87	88	95	94	76	98	92	55
GGGATTCATTGGTTCG	alt_4632_fdr	13	17	13	12	6	14	13	9	17	16
AGGATAGAGCATGGGT	alt_4632_fdr	11	7	17	24	13	20	16	16	12	6
TACTATGGGTCTTACA	alt_4632_fdr	28	30	44	44	36	33	40	37	45	28
ATCTTCTGTGGGCGCT	alt_4632_fdr	1	1	7	4	1	3	2	1	6	1
GGTAAAATTACTTGCA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTTAAGAATTGTA	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GACAATAACCGGCACC	alt_4632_fdr	6	12	11	6	6	6	16	12	14	7
AATATGCGCTTCCCGG	alt_4632_fdr	19	28	17	22	23	15	20	18	10	21
CGGATCCCCTCTGCTC	alt_4632_fdr	71	48	90	70	65	53	66	53	67	58
CTCCTAATACACAAGA	alt_4632_fdr	5	6	4	2	9	2	4	8	4	5
CATAGGCGGTAACCAT	alt_4632_fdr	38	33	46	40	30	32	42	33	45	27
ATGATTAAAGGAAATT	alt_4632_fdr	58	24	69	43	27	50	19	72	37	44
CTCCCACACGGCTGCG	alt_4632_fdr	13	42	16	10	59	20	50	15	39	22
CCAATAAATATATCAC	alt_4632_fdr	29	25	27	21	36	22	24	13	30	27
GTATCCGCGCACCAGG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GAATGGAACTGGTACT	alt_4632_fdr	114	103	129	127	92	100	120	117	96	93
GCGATAACGGTCTTTT	alt_4632_fdr	7	4	10	11	7	10	8	8	6	8
CCAACGGTTAACGCCG	alt_4632_fdr	13	30	23	29	30	21	16	24	20	19
TACGTACTACATTGGC	alt_4632_fdr	85	84	85	73	61	63	87	64	77	58
AATGACGCTTAAGGCA	alt_4632_fdr	26	30	65	32	37	47	31	26	45	24
CCACAGAATAAATGCG	alt_4632_fdr	0	0	0	0	0	0	0	0	0	0
GCGATGAAGGTTAATA	alt_4632_fdr	11	12	15	8	15	5	17	9	16	5
TCTATCGGCCGTAAGA	alt_2208_fdr	11	7	23	10	8	8	5	15	16	15
CGGTTAACGCAAGTTA	alt_2208_fdr	7	2	11	1	1	9	1	6	7	4
AGTACCATTACATACG	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
CATACATAACTGTCAC	alt_2208_fdr	205	173	257	205	184	218	191	185	182	213
CTTTTCTCTCCGTGCA	alt_2208_fdr	102	70	90	80	66	74	73	82	86	59
CGTGCCGCCACACAAA	alt_2208_fdr	23	17	34	29	17	25	20	33	37	23
AGTTGAATTGTGTGTC	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGTTCGCGCTAAA	alt_2208_fdr	74	61	89	67	53	53	47	44	35	65
GTAGGAAATATGTCGG	alt_2208_fdr	166	77	197	129	97	164	100	142	106	156
TGAAAACTTTGTTAGC	alt_2208_fdr	168	143	216	187	122	187	171	167	150	139
GACCTCGACTGGTCCT	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GTCCACTATTTTCGGG	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTCGTGTTAATTA	alt_2208_fdr	56	58	74	65	47	63	53	51	58	53
TCGATTACGCAGGCCG	alt_2208_fdr	43	24	43	33	28	36	25	21	32	36
CCTGCATTTCGATTGC	alt_2208_fdr	61	40	60	63	49	61	54	47	44	56
CGGTGGTGTTTTAAGG	alt_2208_fdr	246	165	303	258	165	250	187	228	222	240
AGGTTTGTCTGATTAA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GACTGGCCTTGGAGCA	alt_2208_fdr	58	42	70	55	52	69	60	53	47	43
CTCAATAGGTTTATGC	alt_2208_fdr	59	34	61	52	28	61	34	57	50	30
TCAACTACAATGTGAT	alt_2208_fdr	17	10	7	12	6	5	10	10	14	12
TTACTACCGAACTTAC	alt_2208_fdr	173	179	248	219	202	173	213	182	208	202
GACCAGAGATGTGCGT	alt_2208_fdr	4	3	1	4	4	5	3	4	2	6
CTACTCTCTCCGCCCT	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGTTTTTCACCCG	alt_2208_fdr	34	30	43	42	24	38	37	31	35	30
AGCAATGGTGAGGGCG	alt_2208_fdr	5	4	11	5	2	7	2	3	4	4
AGCATACTTCAATAAG	alt_2208_fdr	23	21	27	22	25	26	26	18	21	28
CAACCCGACTTGCATC	alt_2208_fdr	37	21	54	43	27	32	11	25	19	32
AACGTACATGGTGATA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
ATATCTTTTTAATTTC	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCTCATATTTATC	alt_2208_fdr	20	6	11	20	12	11	12	14	15	11
TTCGTCTCGTGCCAAG	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCCGCTTGTCATC	alt_2208_fdr	5	3	8	7	5	4	4	5	6	1
GCGAGATCACGGTCTA	alt_2208_fdr	91	48	110	107	66	76	61	86	51	78
GGATGCGTTCCACGTT	alt_2208_fdr	48	52	48	62	46	56	51	51	39	38
CAATTACTAGGTCACT	alt_2208_fdr	34	32	35	31	31	43	42	30	36	30
CTTGGAGCTATTTCGG	alt_2208_fdr	4	3	4	4	3	7	6	9	3	6
CTCGAGCATGTCTGAA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GTATTCACACATTCTT	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGACAAACCTGTC	alt_2208_fdr	83	57	83	84	53	72	53	71	61	67
AGATCTCTGTGACTGA	alt_2208_fdr	10	10	9	7	11	16	11	7	14	8
TGATTTGGGTTGTTGA	alt_2208_fdr	15	34	17	18	31	21	50	15	36	24
GCTCCCTGGAATATAC	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCCCTGTTCTGTG	alt_2208_fdr	22	21	16	18	12	7	14	13	20	7
GCCGCACTTTTATACA	alt_2208_fdr	74	69	61	77	55	63	57	67	62	59
GGTTTATAGTATTTGC	alt_2208_fdr	21	11	17	13	18	14	15	18	18	15
AGTCTACTTTTTAAAG	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCAATGATTTGAC	alt_2208_fdr	39	44	76	51	44	52	46	64	61	33
CTAAGTGGCCTGCTAC	alt_2208_fdr	24	19	13	26	11	13	12	13	21	12
CGCACAAGCTGGTTTG	alt_2208_fdr	19	11	42	19	19	20	18	26	17	23
CACCAACGACCCCCGC	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTACCTTGTAACC	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCCTAGGCGTACGCTC	alt_2208_fdr	53	40	69	55	43	58	49	52	49	44
CTAATCTGGCTAGGAT	alt_2208_fdr	44	40	39	44	35	38	31	47	27	37
TGGGCGCCTGGCGTAG	alt_2208_fdr	66	45	83	87	46	51	44	82	54	71
GATTTCGGGGGGATCT	alt_2208_fdr	42	25	40	38	25	40	19	39	32	33
TAAGAAGACTTCCGAA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCTTAGTCGGGCC	alt_2208_fdr	35	40	36	31	32	31	26	34	19	36
CTTATTAGAAATTAGT	alt_2208_fdr	9	6	10	12	16	4	7	7	8	5
CCGTTCGTTACCTAAT	alt_2208_fdr	45	28	39	25	37	31	32	30	36	22
TCGGCAAATATAGTAT	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
AGTACACGTTTTGGCT	alt_2208_fdr	42	39	72	68	48	78	56	71	49	44
ACTCTATTGGAGTCTG	alt_2208_fdr	100	83	110	114	85	96	72	85	58	94
CTGGTGTGATCGAGTC	alt_2208_fdr	65	45	73	55	45	50	43	53	49	49
GAAATCTAATGCCCCT	alt_2208_fdr	60	41	58	38	37	55	35	50	38	34
ATCCACTGATTAAGTG	alt_2208_fdr	75	56	72	81	42	70	60	60	55	68
CCCCGGCGGCTAGGCC	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
AGATGGACGCGCAAGT	alt_2208_fdr	18	10	28	31	15	17	19	15	18	16
GTGCATTTCGTTTTAA	alt_2208_fdr	1	3	1	3	0	0	1	2	1	2
AGCTATCCTCATTCCC	alt_2208_fdr	32	14	45	36	17	40	26	35	32	33
CTTTTGAAACCTTTTT	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCTCGGGTTGATA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTGGGAGCTACCC	alt_2208_fdr	31	21	29	28	18	21	17	26	22	29
TCGTCGGACAACATGT	alt_2208_fdr	53	44	59	50	44	52	46	29	35	53
TATTGTTATTTCCTTA	alt_2208_fdr	71	55	103	84	67	81	56	77	57	76
ATTTGTCGTTTCGGAG	alt_2208_fdr	36	13	23	24	21	13	19	21	30	18
CCGACCTCAGACTTGC	alt_2208_fdr	26	20	47	39	26	28	22	31	19	26
TAAGGTAGGGCACTCC	alt_2208_fdr	20	8	16	15	15	12	5	12	13	9
TTCTGCTGTCCTGTAC	alt_2208_fdr	81	69	105	91	65	75	76	62	83	57
TTCGCGACCACGGTAC	alt_2208_fdr	11	13	16	16	9	19	11	6	19	23
GGTTTGCTGAATGCAG	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
CATCAGCTTTATATTT	alt_2208_fdr	25	16	21	22	20	18	16	25	11	23
GAACTTGCTACAGCTT	alt_2208_fdr	13	6	20	9	7	11	12	14	13	11
TGCCGCTGTTTGACAG	alt_2208_fdr	8	20	21	15	16	10	7	20	15	16
TAGTGGGGTAAGGTTC	alt_2208_fdr	31	27	49	36	19	48	26	27	14	33
AGTGCCTGCCCCCGTT	alt_2208_fdr	39	31	44	42	33	48	33	37	47	31
GCCGCGCGTCTTGCCA	alt_2208_fdr	2	5	5	7	3	9	3	1	2	2
GTTACATTGCGGCACA	alt_2208_fdr	130	100	143	128	115	103	113	118	89	108
CGATCAGTTCGCTAGC	alt_2208_fdr	11	5	12	6	9	13	8	10	3	17
TGACTGCTGTGGGGCC	alt_2208_fdr	28	17	35	15	15	28	11	22	18	23
CCTACCCAAGACTTGT	alt_2208_fdr	40	32	56	22	33	29	35	22	30	32
AACATCATTTTCATTT	alt_2208_fdr	16	16	19	25	8	20	11	12	11	10
GCATCTACGCTTTGTT	alt_2208_fdr	16	20	24	21	12	17	18	17	15	13
CAACCGTAATTAGTGT	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TCGGACGAAATTATTC	alt_2208_fdr	41	17	36	33	26	34	28	24	29	31
GCTGCTATTGGGTGAG	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GAACAAGAGCCCTATA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCGCGCATTTGTG	alt_2208_fdr	42	32	39	46	40	29	32	46	30	39
CCCCACGCCCTATGAA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
CTTAACTTTTCGGCAG	alt_2208_fdr	69	34	73	55	40	41	37	51	41	42
TAAAACATTCTAGAAC	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GCATGCTTAGATCGGC	alt_2208_fdr	23	18	31	23	18	21	20	15	15	31
CAGGTGCTTAGGCTAA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
TTATGTAGGCTGTCTG	alt_2208_fdr	26	13	31	19	17	24	19	22	19	25
TTGCAATCTTTGCAAA	alt_2208_fdr	58	63	68	58	68	51	60	37	46	51
TGTGGCCATAACAATT	alt_2208_fdr	10	6	12	6	4	12	7	10	4	20
GGCGTATTACGTATTC	alt_2208_fdr	0	0	0	1	3	1	0	1	3	0
CTTTTTTTCAGTACAA	alt_2208_fdr	0	0	0	0	0	0	0	0	0	0
GACCAGTTCGTGGCTT	alt_2208_fdr	14	6	22	14	9	8	17	9	12	7
ATGCCTCCGTATGGCT	alt_2208_fdr	3	7	16	7	4	7	5	5	2	2
GCCGTTTTAATCCCTC	ref_5201_fdr	6	9	5	8	15	8	18	9	9	5
ATATCTGACCACCGCT	ref_5201_fdr	113	234	136	113	197	96	199	95	229	86
TGCGATTCTAATCACC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CGTAGTTTTGATTCTC	ref_5201_fdr	45	78	45	52	83	21	74	38	71	26
TCCGACTGACGAGATC	ref_5201_fdr	5	19	6	8	25	11	16	10	21	5
GACGTGTCGTTTGGAC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCTCGGCGCTCTG	ref_5201_fdr	9	10	7	6	11	5	8	3	10	3
TGGGATAACTACACGG	ref_5201_fdr	3	6	3	6	4	2	6	3	9	2
TGTAGGGCACCAATTC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCTCGGCACCGCC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTAACGATTGATT	ref_5201_fdr	8	10	7	8	10	4	17	7	12	3
CGTTTCGTCCTTGAGG	ref_5201_fdr	8	10	4	5	12	5	5	6	13	7
AGCTCTGGATAGGCCG	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCTGTGCATTTAA	ref_5201_fdr	25	54	22	15	42	14	55	16	65	20
CAGCTAATCACTTGCT	ref_5201_fdr	57	96	48	52	75	25	84	39	83	39
TACGCCCCCATCCTTT	ref_5201_fdr	3	8	4	3	9	1	6	5	9	0
ACCGCGTGTTACACAC	ref_5201_fdr	12	24	5	6	20	8	19	12	33	9
CTGTTACGCCCGTTTG	ref_5201_fdr	163	325	183	148	318	132	311	141	327	149
CGAAGAGAAAATGAAT	ref_5201_fdr	80	95	88	75	92	65	75	64	100	71
CCCTGTTTCGATTGGT	ref_5201_fdr	1	7	4	2	4	0	7	0	6	1
TAAGATACCTTGCGGA	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCGTAACAACCCT	ref_5201_fdr	33	43	38	31	62	24	47	23	55	26
CCCGGGCGTAACTAGC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTATAGCGACTGC	ref_5201_fdr	43	57	44	41	66	42	42	29	40	21
ATGTGACAAGGTTTGG	ref_5201_fdr	3	11	2	10	11	2	12	4	12	3
GTAATTACCCGACGGT	ref_5201_fdr	18	36	16	14	23	17	25	10	31	9
AATAGGAGCTGTCTTC	ref_5201_fdr	54	105	77	76	113	59	113	52	105	63
GCAGTGTACTGTGTAG	ref_5201_fdr	35	63	27	31	68	30	76	37	71	31
CGCGTAAGGCCAGTTC	ref_5201_fdr	30	53	53	32	59	36	65	34	53	30
ATTGGTTTTCATTTCG	ref_5201_fdr	58	120	79	78	129	56	139	58	124	62
ATATCTGACAACCGCT	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CGCGATACATGGTTTG	ref_5201_fdr	51	65	59	64	72	51	68	46	86	38
CCAAAAGGGGAATACC	ref_5201_fdr	19	28	17	25	26	20	40	23	27	17
AACTATTGTGCTCATT	ref_5201_fdr	14	27	16	15	24	13	30	11	27	13
CTTGTCTACCCCTACA	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
ATGCACATATTTTCAC	ref_5201_fdr	7	22	18	17	17	11	13	13	19	16
ACTGGGGCATACTCAA	ref_5201_fdr	14	20	22	32	20	19	37	21	31	12
GTCCGTGGAATTCCAG	ref_5201_fdr	4	5	3	5	11	6	11	3	5	4
TACTAGACCCCGTCTC	ref_5201_fdr	15	28	8	10	37	10	29	16	45	9
CCCTTCTGCCGACCAG	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
TTAATTACGCGCTGTC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCACGGGCCTAAA	ref_5201_fdr	72	91	72	64	82	58	89	52	121	58
CAGTCTGCTGTCGGCA	ref_5201_fdr	24	42	30	26	48	41	62	21	44	33
CTTATCTATGGATTCC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGTGTTCACGCTG	ref_5201_fdr	127	236	132	138	212	132	247	126	220	129
CATCAACAACTTACTA	ref_5201_fdr	12	23	12	1	22	14	14	13	33	4
CCTTAACGTTCAATGG	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CAGAAAGCGTGACCTG	ref_5201_fdr	6	6	4	4	3	3	11	8	4	4
AAGGGAGAGTATGCCA	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
GGGACTCATCTCCCGC	ref_5201_fdr	14	7	7	9	14	8	12	11	12	6
CAAGGAAAATCTGCTC	ref_5201_fdr	10	16	10	10	43	13	22	9	32	8
TTGCGACGCTATACTC	ref_5201_fdr	6	29	19	12	22	18	40	22	30	11
GTTCTATGTGATCATC	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CCTGATTTTTAATTGA	ref_5201_fdr	3	8	8	1	2	12	8	4	4	2
GGTTATGGCTGAACCC	ref_5201_fdr	219	236	237	232	263	219	234	186	281	170
TATTTGTCCTCGGAAG	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
GCGACCTCTATGTTGT	ref_5201_fdr	34	46	39	36	33	28	40	17	43	36
GGCCGACTGCCGTCTG	ref_5201_fdr	10	51	14	11	59	19	43	9	54	12
AGTTTTGCATAGGCAT	ref_5201_fdr	3	6	7	3	9	2	7	3	17	7
CACCAGGTAGATCGTA	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CATAGGGTGAATATGT	ref_5201_fdr	7	3	1	2	3	2	6	6	7	3
CGCTCAAACGGTCTCA	ref_5201_fdr	26	81	50	40	81	29	74	50	91	43
TTGCCATAAGGTGGGG	ref_5201_fdr	2	5	6	3	6	3	6	1	4	1
GTAGGGTGTTTTATGG	ref_5201_fdr	2	14	13	8	11	10	14	5	22	8
GCAGCGGGTCTATTTC	ref_5201_fdr	1	3	4	3	5	5	7	0	3	0
TTTTCTTTGCAGGTCT	ref_5201_fdr	155	164	175	142	138	150	173	152	171	146
TTATTCGTTACGCCGT	ref_5201_fdr	23	36	23	26	29	20	36	23	33	16
TAGATATATTTATGTC	ref_5201_fdr	15	19	15	17	25	13	16	16	13	12
ACCCAGTCAGTCTTCA	ref_5201_fdr	0	0	0	0	0	0	0	0	0	0
CTATAAGCATTAAAGA	ref_5201_fdr	4	3	1	1	2	4	2	1	1	1
AAAGCCTCGTAGGGGT	ref_5201_fdr	36	90	79	67	109	59	78	41	92	49
GGGTGGATGCGTATCG	ref_5201_fdr	16	24	20	20	22	9	24	11	29	18
CTGTTAGGAACAGTGG	alt_5870_new	17	8	26	8	12	17	14	10	16	6
AAGAGACTGTCGCTGT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GCGATGATGGTCGTCA	alt_5870_new	95	106	145	109	95	102	72	90	74	105
GTTTGATTCCACGCCA	alt_5870_new	115	90	148	101	99	114	123	109	84	117
TAGTCATACGCTATAA	alt_5870_new	57	40	65	36	37	46	44	38	41	38
ATATTCCGTTCTCTTC	alt_5870_new	6	6	0	5	2	4	2	4	4	4
CATTTTGTACCGCCTA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TAATTTGCCCTAGTGG	alt_5870_new	66	57	75	85	60	73	56	56	63	48
TACGAGCGAATATCCT	alt_5870_new	48	32	62	48	37	53	58	52	45	45
GCTGGGTTCCAGTTTC	alt_5870_new	61	64	67	48	54	70	63	67	64	59
CGATCTGCAGCGACCT	alt_5870_new	20	9	24	22	26	24	19	15	17	20
CAAACCTACAGCTTTT	alt_5870_new	15	23	28	17	16	22	31	23	19	16
AAGTAGGCAATCTGAT	alt_5870_new	8	4	12	6	8	7	6	15	6	12
AGCTGCCCTTTCGGCG	alt_5870_new	65	42	84	43	36	49	54	43	37	36
TAAGGCTACGGGTAGA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GGATCGGGATCCCCTC	alt_5870_new	13	7	8	11	10	11	8	6	4	11
GGATATAATCAATCGG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TTTAGAAAACCCCGTT	alt_5870_new	8	4	9	4	2	9	8	11	10	7
TTTAGCGGAACGATGT	alt_5870_new	68	44	65	45	39	62	41	59	47	57
ATTACCGGGAAGATTC	alt_5870_new	0	0	0	0	0	0	0	0	0	0
AGTAATGTTTATGTCG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
AAGAGGTAGTGCTCGT	alt_5870_new	34	35	32	35	28	33	26	28	22	26
TCGCGCTCGTTTACTT	alt_5870_new	21	27	25	26	13	30	16	21	18	22
AATTAAACGCTCCTGA	alt_5870_new	48	49	65	44	51	49	51	37	68	54
AATTACTTCTACTGCG	alt_5870_new	23	25	20	13	25	16	27	15	31	22
TAGGCGTACACTGAGA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TTGCCCCGCTTTCTGG	alt_5870_new	97	101	114	69	83	98	91	91	99	81
AGAGCGGGTCTGGATC	alt_5870_new	18	14	16	11	17	21	9	14	11	15
GGGTTTTTGCCATTCT	alt_5870_new	166	112	182	122	149	146	116	136	108	129
TTTCTAGTGTCCCCGT	alt_5870_new	15	29	27	15	36	16	27	16	35	16
GCGAACTCCTCCAGTG	alt_5870_new	24	18	27	17	23	29	33	20	31	18
GTATGTGTAAAACAGC	alt_5870_new	0	0	0	0	0	0	0	0	0	0
ACCTTACGGCTGATGA	alt_5870_new	12	5	9	9	5	13	13	6	8	5
CTAGATTTGAGTAGGC	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TGCGCTAAGGTCGCAA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
AACTTCGATATGGGGT	alt_5870_new	30	29	39	36	38	27	21	35	41	19
GAGTACACGTGAAGTG	alt_5870_new	5	5	2	2	2	1	5	3	5	5
GCGGTAGAGCACCGGC	alt_5870_new	17	50	18	20	49	22	41	13	39	15
GCTGGCCTTTGGAATA	alt_5870_new	40	42	75	43	50	43	53	45	47	35
TTAAATGCATTCTACT	alt_5870_new	54	40	59	49	43	57	59	54	49	52
CCTATTCTAGTCAGTT	alt_5870_new	44	46	41	25	46	45	42	41	35	29
TAACCCTTTTGAGGTT	alt_5870_new	412	315	492	328	368	340	356	340	353	301
ATTAGTTCCCACCCTT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TTCGTTTCTCATATCG	alt_5870_new	30	24	41	22	40	35	30	34	30	35
ACGTGACGTCGCGCCT	alt_5870_new	34	24	22	33	30	28	23	22	30	25
TCGCATTATCATCATA	alt_5870_new	19	14	25	18	17	26	19	20	28	23
GCACGAGATACAATGC	alt_5870_new	38	41	62	44	37	48	34	49	41	45
AGCATCTCGTCCTGTT	alt_5870_new	47	33	48	41	21	35	47	41	40	31
GTAATGGCCGTGACAG	alt_5870_new	5	1	3	6	4	1	2	4	1	5
CGTTAATTCTGTTAAA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GAGGCCCATAGTCGGT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
AACGCATGGCGCCTCC	alt_5870_new	13	7	8	4	2	11	6	4	6	9
TCGCGCGGGAGTATCC	alt_5870_new	0	0	0	0	0	0	0	0	0	0
CTATAACTTTAACGTC	alt_5870_new	42	53	62	35	52	49	59	48	47	51
TTTCGAGACCCGCGGC	alt_5870_new	3	5	3	2	4	1	0	3	5	0
GATTCCTTGTGACCGA	alt_5870_new	42	32	46	39	43	47	33	30	34	27
TTAACTTCCGATTTTA	alt_5870_new	2	2	4	0	1	1	1	1	1	1
GGAGCGGGTTTTGATT	alt_5870_new	35	9	28	20	26	14	23	23	13	28
ATGTAATCCCTGGCTC	alt_5870_new	10	8	16	13	15	8	16	12	6	11
GTCACCGCAATGCATT	alt_5870_new	76	68	101	48	52	78	69	71	80	48
ATGTTCCAAGTAGCGT	alt_5870_new	29	23	32	28	22	18	23	10	17	16
AAGATTAATGGAGGGG	alt_5870_new	163	120	221	182	121	194	178	156	183	169
GTGCCGCGCGAGGTGT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
AGGTTTTCATCGGTTT	alt_5870_new	42	27	55	42	46	39	35	60	48	38
ATATCACTAACGGTTA	alt_5870_new	34	25	33	37	24	28	17	27	30	37
TAAAGTTTGGGAATCT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GAGGGACGGTAACTAA	alt_5870_new	26	18	22	16	19	21	17	19	33	17
ACTTGCTGCATAGCAC	alt_5870_new	9	4	6	5	1	4	3	5	6	0
TTTGCAGCTGGGGTTA	alt_5870_new	159	114	194	104	98	134	98	96	100	111
CCATAGGCCCTATGCC	alt_5870_new	6	29	10	4	23	7	27	6	22	9
CTCGACGTGTATGCAG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TCCCTCTGACGCCTGT	alt_5870_new	15	26	22	13	30	17	18	16	38	13
CCCACAGGTCTGGGCG	alt_5870_new	40	23	36	26	31	33	32	26	28	32
GTAGAGGTTTAGCTTG	alt_5870_new	21	11	20	16	12	16	15	16	20	14
GCACGTTTGGCATTCT	alt_5870_new	6	2	1	8	8	7	1	1	3	2
GGTTGCACTCTGGGTG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
CTTGGTCGCTTCTTGA	alt_5870_new	103	87	116	83	55	59	65	98	92	62
CTATTATCGCGCAACG	alt_5870_new	16	16	15	21	16	22	19	13	20	14
TCAGTCATTCAATCCG	alt_5870_new	39	46	49	28	24	34	45	21	25	36
GAGTCACTACTTAACG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TCTCTACGCCTGAGTT	alt_5870_new	21	15	26	16	16	17	18	15	14	18
AGGTGCCGTATTTATT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GACAGATTTGTTCGCC	alt_5870_new	56	28	39	42	38	47	39	35	32	40
CCGTCTGAGTTCTGTC	alt_5870_new	2	8	2	1	4	6	5	2	7	7
CATGGCACCTAACCGT	alt_5870_new	236	193	269	199	177	213	175	207	176	211
CCTGCTCCTCTTTCGG	alt_5870_new	161	110	159	136	124	130	106	124	131	121
GCGAATCGAACACTTC	alt_5870_new	35	26	32	25	25	33	20	33	30	33
ATTAGGCAAGCACGTC	alt_5870_new	57	50	76	45	40	40	51	47	41	40
TGCGGTCTTGGGATAA	alt_5870_new	0	1	3	5	3	4	1	0	1	2
TTATGTACGTTTTCTG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
CCGTGAAAAGGTACTT	alt_5870_new	6	18	10	3	9	5	19	5	17	6
ACATGCGACTACCCTT	alt_5870_new	2	2	3	1	2	4	3	6	6	3
TCGCCATTTTGCTTGG	alt_5870_new	87	65	106	86	69	79	63	71	89	76
TTGCCATCGGCAATCG	alt_5870_new	141	112	162	130	125	117	136	132	105	124
GGGGCACGCAATGAGT	alt_5870_new	41	37	56	35	36	16	37	45	21	40
AAGGGCTTTCTGCGAC	alt_5870_new	0	0	0	0	0	0	0	0	0	0
ACCCCTCCTTGCCGCT	alt_5870_new	79	70	90	78	63	69	76	94	78	61
CGTCGGCAGCGTTCAT	alt_5870_new	32	33	40	28	17	33	24	20	26	30
TGGTAATCAGGTCGGT	alt_5870_new	3	5	8	4	5	8	2	2	2	9
CGAAACGGCTATTTAT	alt_5870_new	15	6	12	10	9	20	13	9	10	11
CTCCACAGTTTACTCA	alt_5870_new	61	51	72	31	48	78	52	53	42	47
ACGTGATAGGAGGCTG	alt_5870_new	33	23	36	23	30	30	30	22	22	32
CCTCCAGCTCACGTTT	alt_5870_new	12	17	15	9	20	10	8	8	16	14
TACCGAATACTAGGAC	alt_5870_new	65	59	93	52	72	70	71	49	64	57
TTGCACTTGTGGCGAG	alt_5870_new	0	2	1	2	2	1	0	1	2	2
ACCCCTCCGGGAGGAC	alt_5870_new	46	36	51	36	28	38	27	33	36	36
GAGCCGCATACCTTTT	alt_5870_new	56	49	59	55	58	57	60	34	64	36
GGGGAGATTTGAGGCT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
CTATTTTTCTGTGGAT	alt_5870_new	95	66	92	84	63	70	72	85	72	78
GCCTTAGTTCAGCCTT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
CACTTTATTGAACTGT	alt_5870_new	8	3	14	16	7	5	12	6	12	11
GGACCTGTTTAAGGCA	alt_5870_new	60	34	60	32	40	52	41	35	35	35
CACTTGCAGTCCGCGT	alt_5870_new	16	10	15	13	12	12	17	6	8	9
GCAGCAGGGACGGTAG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
CGGACTCTTTGAGTGG	alt_5870_new	23	21	37	30	16	21	29	28	16	34
AAAGCATCGTATCTCA	alt_5870_new	81	51	81	49	61	54	76	65	80	70
CCGCCACTGTGTGATT	alt_5870_new	141	63	93	91	78	82	89	83	80	82
TTCTCAAACAGCGAGT	alt_5870_new	102	101	108	92	89	86	78	77	99	73
TTTTTCATTGAATGGG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
CGCTCTGCCAGAGTGA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GCGAGGCCTTGATGGT	alt_5870_new	10	12	14	17	13	20	8	17	14	19
CCCGTCACCGTTGGAT	alt_5870_new	1	21	4	2	14	1	13	3	16	0
TATTACACCCTTTTCG	alt_5870_new	30	25	37	33	19	34	28	15	27	23
CACCCCGTACCTATTT	alt_5870_new	12	17	15	9	30	7	23	14	24	15
ATACAATGTTGCCTTA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TGGCGCTAAGATGCCA	alt_5870_new	14	13	22	10	10	6	10	11	6	11
CGGCAGGGCGCGATCG	alt_5870_new	56	22	46	41	45	40	29	27	33	30
TTCGATAAATTGTGTG	alt_5870_new	63	65	101	76	55	65	55	50	53	60
CCATAAGGCGTCTACG	alt_5870_new	20	21	27	13	24	8	15	18	18	16
CACTGCTGGACTAGTT	alt_5870_new	31	17	36	22	22	23	12	27	24	29
CGGTATACGCGATCGT	alt_5870_new	2	3	9	7	3	10	4	7	7	2
CTTCGATGGGACGCAG	alt_5870_new	69	48	78	54	52	42	46	62	71	43
GGCATGGGGTGTCACA	alt_5870_new	9	9	9	13	5	10	10	11	6	10
TCGTGGGCAAGGGATA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GTGCTGTATATCGGGT	alt_5870_new	9	6	17	6	8	5	2	14	5	8
TCCGGCCTAGTGTATA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GTCTATCTGCACGTGA	alt_5870_new	11	8	10	11	9	9	10	12	12	7
TCCGGTTTGCCCGCTG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TGTGTCAGAAACCATC	alt_5870_new	27	17	17	11	24	21	25	21	15	30
ATACTTCGTCTTATTG	alt_5870_new	0	0	0	0	0	0	0	0	0	0
GCCTGGATAAACTATA	alt_5870_new	44	46	62	49	46	52	57	48	48	55
GTTTCCAGCATCTCCC	alt_5870_new	6	5	4	4	5	3	2	3	4	5
ACGTTTACGCTTCAAT	alt_5870_new	49	33	62	46	51	53	44	59	57	42
ATCGCCTTGGCTAGCA	alt_5870_new	20	23	31	24	21	22	25	19	32	25
CGTCTATCGGGTTCTT	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TTCAGGTGTTATGCTA	alt_5870_new	0	0	0	0	0	0	0	0	0	0
TTTCTCTTTAGCAGAG	alt_5870_new	26	14	21	20	23	20	23	30	20	15
CACGAATCCGTTTCAT	alt_5870_new	15	18	30	14	17	25	12	19	15	20
GTTGTACTACTGAATA	alt_5870_new	27	26	48	28	38	22	30	24	35	21
GGTTACGGTACGTCTT	alt_5870_new	19	20	30	18	27	23	24	21	20	21
CCTTCTCGGTTCACTA	alt_5870_new	13	12	39	20	27	22	13	22	26	24
TTGGGTGTCTCAGCGC	ref_5997_new	29	33	19	11	44	21	40	16	55	22
GTGGCGTGTTCTTTCT	ref_5997_new	4	10	6	4	6	1	10	2	16	11
GAAGCAGCCACCTCTA	ref_5997_new	15	12	22	19	17	11	21	12	15	9
AGATCCGAAGGATGAA	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TCCATGTTTGCAAGTT	ref_5997_new	8	9	17	17	19	18	18	17	20	4
TTATTTTAGAAGCCGT	ref_5997_new	85	107	105	77	102	73	118	80	110	59
CTGGTACCGACTAAAC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CCCGGCATGTAAGATG	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CCTTAATGGAACACGA	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TCATGTTCAAATTTGT	ref_5997_new	22	16	27	25	26	19	32	18	29	10
CTATAGGTAATGACCC	ref_5997_new	0	4	1	0	1	0	5	0	1	0
TTTCCTCGATTTCATT	ref_5997_new	7	18	27	22	20	22	26	24	19	15
ACAGTTCATTTCAGGC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CTACCGGCGGATGTAC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TTGTGTGCAGCACGAA	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TCTCGTGCTGATGGCC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TCTGTGATGTGGCTTT	ref_5997_new	9	12	14	4	6	13	15	3	11	7
CTACTCGAGTGGCCCG	ref_5997_new	36	30	37	19	37	23	41	20	27	19
CACCGTGACCCAAAGC	ref_5997_new	8	15	13	7	11	7	28	7	19	9
TTCGCCGGGAGTCAAG	ref_5997_new	3	5	7	1	6	2	7	1	10	5
CTCTTCCATGGATCTG	ref_5997_new	11	23	20	23	14	13	24	21	13	16
GATATTCGGGCTTTAC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TACAGTGGGCGTGATA	ref_5997_new	3	6	4	1	6	0	5	2	4	2
AAAAACCGCTTAATAG	ref_5997_new	33	28	30	30	27	30	27	24	33	31
GAGTTTTTAAATAACT	ref_5997_new	16	17	23	16	17	19	24	23	17	21
ACTTTGCGGATTGTAA	ref_5997_new	12	21	24	17	30	19	21	20	16	10
GTTGAAAGATTTACAC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CTCTGTGGGTTAATTG	ref_5997_new	25	28	23	20	26	23	20	9	22	21
ATCCGATGTCGACCTA	ref_5997_new	0	0	0	0	0	0	0	0	0	0
GGGTCCGGCCTTTGAA	ref_5997_new	0	0	0	0	0	0	0	0	0	0
GACCGGTTGAAGGTAC	ref_5997_new	47	46	41	41	49	43	60	41	65	29
CATGCGGTCTACGTCG	ref_5997_new	7	5	7	9	13	10	7	16	17	17
TGAAAGAATTGTTTGA	ref_5997_new	1	1	5	4	1	2	2	3	6	2
ACACACCTTTACACAC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
GTAATAACCCGTTTGA	ref_5997_new	7	15	11	14	10	14	24	10	14	18
TCGATCCCAGAATCAT	ref_5997_new	52	63	90	65	70	60	72	50	82	51
TTGGCGATCCGCGTGT	ref_5997_new	21	31	29	24	37	29	24	22	22	25
GAATTGGAGTCAGGAC	ref_5997_new	0	2	1	0	0	1	3	1	1	5
AGACCTGTGCCCATTG	ref_5997_new	0	0	0	0	0	0	0	0	0	0
GTGGCCTGTGTGCCAG	ref_5997_new	11	16	15	8	27	13	28	11	22	12
ACATTTATACCAGTGT	ref_5997_new	7	15	19	7	16	5	7	6	12	7
GCCAGATTAATCCTTA	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CCTCAGACCTGGCTGC	ref_5997_new	82	104	124	71	123	80	126	81	120	84
GTGAAGTCTAGAACAG	ref_5997_new	0	0	0	0	0	0	0	0	0	0
ATCACTTCACTTTTTT	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TGGGGTTGCCTTCATA	ref_5997_new	0	0	0	0	0	0	0	0	0	0
TTCACGCAGCATTCTC	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CGTGTTAGATTCTCCC	ref_5997_new	25	35	30	34	52	35	67	20	40	26
TTGTCAGGGGTTTGTT	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CCAGATACATAGACTT	ref_5997_new	2	5	4	6	3	6	8	3	5	2
GGCTGATGCAGGTTTT	ref_5997_new	13	10	15	8	14	12	15	9	11	15
TATATCTACTTTGCCA	ref_5997_new	15	7	6	7	11	5	7	5	10	4
GGTTCCTCTAACGGCT	ref_5997_new	0	0	0	0	0	0	0	0	0	0
CAAGTTTACCCATTAG	ref_5032_fdr	54	50	65	52	46	69	47	51	35	45
TGAACTTATACCTTTA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATCACTTTACCAACAG	ref_5032_fdr	33	30	49	55	42	44	52	44	56	37
TCAAGTGCCGTATCGC	ref_5032_fdr	114	72	129	120	76	116	102	100	93	91
TTCGAACAGCTGTGAA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GAATGGTTGGTATACT	ref_5032_fdr	19	13	28	28	18	22	16	28	27	27
GCCAACTCTACGTCCG	ref_5032_fdr	96	90	102	78	78	90	95	80	86	91
CCTTTATTATAAGGGA	ref_5032_fdr	2	2	0	7	3	8	4	4	4	4
TGGATAACGGTCCGTC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTTAAAATCTGCT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTGCATGCCTGGCTCC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CAACTCTTAGGCCGGG	ref_5032_fdr	30	20	29	25	20	24	19	23	24	12
GTCACCTCACGGTTTC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CATCGATGTCCGAAAC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TATGTCGCGTGGTTGT	ref_5032_fdr	62	35	64	73	46	55	40	60	49	52
TGATTGCACATACATC	ref_5032_fdr	209	183	301	255	191	209	219	184	217	192
GGACGTAGGCCGCGTA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TACGAAGTTCGGTATG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGAACGTCTGTAA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCCTCATTTTTCA	ref_5032_fdr	74	74	82	68	50	55	70	65	72	76
AAGAAACTGAAACAAG	ref_5032_fdr	182	123	199	190	133	179	142	177	136	166
TGCCTCGTATTGTCGT	ref_5032_fdr	7	6	5	11	7	9	9	6	10	12
TCGTTTTCTAAGTGTA	ref_5032_fdr	1	3	3	7	3	8	2	3	1	3
ATGGTGTAGACCCTTT	ref_5032_fdr	70	60	84	88	55	65	52	79	52	66
CCAAGCCTGCCCCCTT	ref_5032_fdr	38	166	46	57	191	28	192	44	168	29
GGAAGTTCTTGGCTTT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CTCGATAAGTAGATCG	ref_5032_fdr	23	27	24	28	28	16	16	25	32	23
TTTATAGTTAGATCAA	ref_5032_fdr	64	43	93	81	49	72	48	69	72	68
TTTCGTTCTGCCACGA	ref_5032_fdr	100	55	112	96	78	92	62	71	78	79
TATTATTTATTGCTCG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATCCGTCTTAGATGTT	ref_5032_fdr	51	41	56	62	38	43	50	80	39	40
GTTACATCGATGTCGT	ref_5032_fdr	177	112	222	157	144	179	127	173	125	140
TGTCATCTTATTCGGA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCAGATAGGGTGT	ref_5032_fdr	33	33	53	47	54	34	37	33	34	35
GGAGCGGCCCCGCTTG	ref_5032_fdr	18	27	36	28	18	24	15	24	17	28
GTAAGGCGGCCCTTAA	ref_5032_fdr	9	12	10	11	7	7	9	9	8	10
CGAGTATGTTAACTAA	ref_5032_fdr	2	0	3	0	0	1	0	3	1	1
CACGGGCACGGCGTGT	ref_5032_fdr	21	15	29	21	22	18	19	21	13	18
TTTTGTTCGATCGTGG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCCCTATTGGTC	ref_5032_fdr	28	48	43	34	40	29	38	28	36	27
TTCTTCTCTAGTCGTT	ref_5032_fdr	38	28	50	60	25	35	33	47	30	30
ACCTGGTGTACTAATG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGTTTTACCTGTT	ref_5032_fdr	146	115	170	108	115	143	125	166	94	119
GGCTATTGTGCAACAC	ref_5032_fdr	13	15	22	20	11	11	13	11	17	16
GTACCGCTGCGGACTT	ref_5032_fdr	19	1	17	13	6	19	14	9	7	15
CCGCAGCGTGATAGTC	ref_5032_fdr	13	13	19	14	7	12	11	10	9	12
GGAACGTATTTCACAT	ref_5032_fdr	73	47	78	80	56	72	59	55	51	56
ATCTCTAGAACAGTTG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATACCCCATCTTTTTG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTATCTTATGCAC	ref_5032_fdr	91	86	129	99	72	103	69	82	81	91
CTAGCTTTCCCCAATA	ref_5032_fdr	42	48	40	48	69	30	72	38	67	26
CGGTTTTGTACACCAG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CATCGACCGTTAGGGG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATTCACCCTCTTGTAT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CTGACGGTTGTATCCT	ref_5032_fdr	32	11	48	47	28	35	24	36	35	42
CCCCTTGGCCTATTCT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TAAATGATCTATCCTG	ref_5032_fdr	12	0	8	12	9	5	7	3	6	8
CCGATTGACAGGAGCT	ref_5032_fdr	24	37	41	26	39	34	40	20	30	31
CTTTTTCGTGAAGTAC	ref_5032_fdr	27	21	32	20	19	28	28	19	25	19
CGTGCGGGCCAAGGTA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGAAGCAATTTAG	ref_5032_fdr	97	77	150	131	69	102	65	101	80	99
CATACACACCAGATTG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTGCCTGTCAATT	ref_5032_fdr	32	35	26	27	28	22	20	11	27	26
TGGTGCAACTAACTTG	ref_5032_fdr	51	54	70	61	62	41	49	62	51	56
TTTGTGAAGGAAAGCT	ref_5032_fdr	186	169	220	207	156	200	155	194	181	200
GTGTAGCGTAGACCCC	ref_5032_fdr	38	20	30	38	21	29	24	22	24	28
AAGTCCGGTTGTCCAA	ref_5032_fdr	61	55	78	70	41	78	77	77	75	69
CGCTCCCAGCTCGGGC	ref_5032_fdr	3	4	6	6	6	6	11	5	4	11
CATCTTGGCGATCTAT	ref_5032_fdr	13	14	17	19	10	18	11	14	11	15
GTCAGCATTTTTGGGC	ref_5032_fdr	24	25	34	21	20	26	37	27	25	40
GCAGATCCGCATCACT	ref_5032_fdr	42	26	58	40	25	24	27	28	41	36
TACTCCGGCACACCGC	ref_5032_fdr	21	20	26	21	20	15	15	21	21	13
CAGTCAGGTTCCGGCT	ref_5032_fdr	31	25	40	38	24	28	30	28	23	23
TTTATCAATAACCCAT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GACCATTACATGTGTC	ref_5032_fdr	13	17	29	13	18	16	24	12	23	17
CCAGTTTACAGCGCCA	ref_5032_fdr	20	24	18	10	17	13	14	20	25	23
CCATTCTATTCTGGGG	ref_5032_fdr	8	8	8	10	11	9	5	6	8	7
GCTGATTGTTAGTAGC	ref_5032_fdr	93	78	124	78	80	78	94	83	79	77
TAATTGGGGTCCTTGT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTACGGTCCTTGAATT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTTTATTAGGAGG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ACTTAGTGATACCTCT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TAAAATGGCGGTACCT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGTGCCTAACTAC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGTCTGAGATCAG	ref_5032_fdr	4	2	4	3	5	3	2	1	2	4
TATACGGGTATTTTAA	ref_5032_fdr	138	106	149	147	110	128	126	126	103	123
CCCCCAGAGGCTATAA	ref_5032_fdr	48	38	63	55	33	47	30	42	38	47
AATCTATGGCAGAGAC	ref_5032_fdr	30	21	38	39	21	27	16	28	23	20
CGAACACATGGAGTGA	ref_5032_fdr	9	21	15	16	14	11	5	17	9	10
GCCGTCGTACAACTCG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CTAAACTGCTTTTCAT	ref_5032_fdr	78	67	81	90	100	83	79	79	86	76
GTTCCCTAGCGATTAA	ref_5032_fdr	39	39	63	62	31	41	32	45	27	35
GACACGGCGTCATTTG	ref_5032_fdr	13	10	10	4	11	4	6	13	10	6
CCCACCAAGTATGGTG	ref_5032_fdr	21	19	28	19	13	16	20	17	9	17
TGTAGAAAGGTCCTTT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TAGAATCGCAAACAGA	ref_5032_fdr	18	17	48	24	25	26	29	33	25	29
CTATCTCTTGGCTCTC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CTACATATCGCTCTAT	ref_5032_fdr	4	2	3	2	5	1	3	1	1	4
AGAGAGCTGTCTACTG	ref_5032_fdr	90	51	101	81	59	58	76	70	62	76
AAGAGGGTACCAGGGA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TAATTAGTTGCTCAAT	ref_5032_fdr	36	38	29	39	23	25	29	23	34	29
CTTTTGACAAGGGCAG	ref_5032_fdr	63	45	56	60	47	48	37	40	38	47
AAGTACAGTTCGGTAC	ref_5032_fdr	52	44	50	49	50	29	37	48	33	42
GGCGGTAGCTCGCGTT	ref_5032_fdr	21	11	22	16	24	15	13	17	22	28
AATCATCGGTGTGGCA	ref_5032_fdr	92	63	112	85	76	86	60	75	68	80
ACTACGAATGCAAATG	ref_5032_fdr	130	114	142	137	112	135	121	103	118	119
GCATATCCGGTTTGTC	ref_5032_fdr	14	12	17	13	13	21	14	17	11	7
TTTTCACCGTCATTGC	ref_5032_fdr	66	46	63	56	55	54	49	48	52	47
AGCCTCACCCCGCATG	ref_5032_fdr	18	25	53	33	32	22	28	30	23	15
TGCATATGCTCAGGCA	ref_5032_fdr	199	135	220	218	162	157	162	153	162	165
CTTTGAAGACGCCTGG	ref_5032_fdr	77	76	94	87	63	84	67	76	59	52
ACTCGGGTTTGTCCAG	ref_5032_fdr	47	88	102	70	97	68	97	66	119	72
CGGTTTTGTACTCCAG	ref_5032_fdr	207	175	231	205	174	138	215	174	203	201
GAATTTGCTAAACCTG	ref_5032_fdr	52	53	82	72	50	65	65	59	43	61
AGGGGGTATTGCAGGT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCATCACCATAAT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TCACACTAGGACACCT	ref_5032_fdr	22	21	26	28	22	26	22	26	20	28
TTATAGCGTAATGTTA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGTTGTAAGATG	ref_5032_fdr	22	21	30	26	23	13	29	16	19	22
GTATGCCCCAGCAGCG	ref_5032_fdr	104	55	107	80	64	76	91	79	68	87
GTAGGAGCAACCGGCA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GGAATCGGGAACTCCT	ref_5032_fdr	2	2	1	2	1	5	2	2	2	3
ACTCCCTTAGGTTTGA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
AGCACATTAGGTGGCA	ref_5032_fdr	32	35	38	35	32	35	30	24	22	42
TTTCCGACTGAAGCCA	ref_5032_fdr	19	19	37	33	25	28	32	27	18	21
ACTTTACGCTGTATGT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGGGCGTTTCAAC	ref_5032_fdr	9	12	10	1	12	9	9	5	29	7
GGTAGTAGCCACCCGT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GCACAGGGCGGTATTC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GTCGCCTATGGGGCGC	ref_5032_fdr	30	35	49	66	34	42	44	45	30	36
TGCTGGGGTTTGGTTT	ref_5032_fdr	23	14	19	17	15	17	21	14	17	12
CAACCAGACATTGCAG	ref_5032_fdr	50	45	38	48	41	45	37	36	47	51
AAATGTCCTACGTGGT	ref_5032_fdr	27	19	35	22	18	22	32	15	24	25
CCATAGCGAACTTATT	ref_5032_fdr	27	15	23	24	25	26	16	29	23	20
TAGTGGGCAATTCGAT	ref_5032_fdr	79	62	120	121	91	79	92	72	57	74
ACTGTCTTCCTGTCTT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTCACGTACCATT	ref_5032_fdr	45	39	42	37	30	22	30	41	23	26
CCTCTCTCGTTGTCCC	ref_5032_fdr	11	22	12	8	37	9	22	6	28	5
GATCTAGTGTGGTCCA	ref_5032_fdr	36	21	37	18	23	23	26	22	14	30
CGTACCTAACTAAACA	ref_5032_fdr	27	18	27	16	22	27	14	23	25	17
CGGGTCTTTTATTCAA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
AGCCAAAGTAAGCGTT	ref_5032_fdr	58	44	59	62	61	40	57	44	49	59
AATATTGGGTCCACCC	ref_5032_fdr	46	37	51	49	70	46	55	44	44	48
ATCGTCACCTTTTTGC	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTGTACGGCCCG	ref_5032_fdr	66	42	82	52	63	67	53	56	59	51
CTGGACCGTGTCAACG	ref_5032_fdr	1	23	7	10	20	11	21	6	26	12
TAGTATCGATCATTTA	ref_5032_fdr	11	12	29	21	15	11	17	23	15	24
TGGCTTGATTTGTCAG	ref_5032_fdr	71	55	99	78	46	57	58	73	62	67
TTCTTAGAGATGCCAG	ref_5032_fdr	35	49	51	43	43	33	34	31	45	34
AAGTCTCGATGTCGTG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GCATTCTCTTCTGGTT	ref_5032_fdr	43	47	63	85	48	46	60	44	48	58
TTTAGAACCGCCCTCT	ref_5032_fdr	246	156	220	250	187	190	184	214	191	187
CCCCCGCTCGATCGAC	ref_5032_fdr	73	71	73	68	75	62	70	66	60	64
GAACCATTTATTTCTG	ref_5032_fdr	24	18	33	34	19	26	34	18	20	25
GCACCGGGCCTTGCTC	ref_5032_fdr	7	1	10	6	6	3	3	1	5	4
CGTTAGTAAAATTTTA	ref_5032_fdr	333	213	347	355	268	344	283	330	308	310
TATTAGCATTTTTGAT	ref_5032_fdr	84	100	115	101	54	77	85	47	87	62
CCGTCAAGGACACTTG	ref_5032_fdr	3	7	6	16	5	7	9	7	7	9
CACTCCGCACATTCAT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TGCACCTGGAATTCGA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CCGACACTATGGCGCC	ref_5032_fdr	55	25	54	47	26	42	18	49	24	40
CGTCTGCCTGGTAGAT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TACAGCGCGAGTTTAG	ref_5032_fdr	47	38	62	40	38	60	30	36	46	40
GCCCCGTGGTACGCAT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTGGCCTCCGCAA	ref_5032_fdr	31	22	45	39	23	25	37	31	36	33
ATCGGTTCCGGAGCGC	ref_5032_fdr	63	53	75	58	59	72	51	51	50	59
GCCTCCCGCTTCTCCG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGCTTGTTGGTTG	ref_5032_fdr	50	58	78	57	57	53	61	65	79	50
ATGTTACTGGGCGTTA	ref_5032_fdr	22	18	11	22	18	25	11	25	21	24
GATTAGAGCAGTGGGT	ref_5032_fdr	37	32	45	49	40	43	39	53	44	28
TTATTTGCTTCTCTTT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
GACATCGCTTCATCCA	ref_5032_fdr	24	22	43	28	38	34	27	37	38	18
CAATTCTCAGTGCTCG	ref_5032_fdr	38	42	37	34	25	46	34	34	26	23
CCCGAAGAGCGAATAA	ref_5032_fdr	144	126	159	169	124	150	111	146	110	142
GTTACAGGTTAAGTCT	ref_5032_fdr	38	40	51	51	30	39	45	42	39	47
ATATCCGCAGTTTCAT	ref_5032_fdr	3	4	4	5	9	5	4	3	1	3
CCTTCACAATCCATAA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TATTGACCGTCATTAA	ref_5032_fdr	27	19	30	30	21	23	17	28	25	30
CCTTGTTATCGGTTTA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TCAACCTGGACCTACG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGTGATCAGAGCT	ref_5032_fdr	139	92	124	127	91	121	104	136	93	122
ACTACGCCAATCCTTG	ref_5032_fdr	37	29	43	37	37	25	33	29	31	30
AAGGTTTATGGACATA	ref_5032_fdr	174	140	218	168	165	173	157	187	143	161
CTTCTTGCTTATTTAT	ref_5032_fdr	26	14	35	29	23	33	28	28	21	12
CTCTTAGTAGCGGCTT	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTCGATTGGTCT	ref_5032_fdr	65	31	74	63	37	46	47	47	41	50
GGGCGATTTAAGGCAG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGGTAAATAGCGG	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGCAATTCTACTC	ref_5032_fdr	39	34	26	41	34	36	46	36	47	38
TCGAAACATATCCAGT	ref_5032_fdr	41	30	42	33	21	28	24	38	19	36
ATGTATAAATCTGAAA	ref_5032_fdr	49	32	57	54	40	48	31	40	45	46
TCAGGATACTCGTGCT	ref_5032_fdr	5	6	13	3	27	10	10	8	6	13
AATCCGAGAAGCCGGC	ref_5032_fdr	96	71	93	96	80	90	73	91	88	65
CAACTGTCGATCGCCG	ref_5032_fdr	100	78	119	105	85	84	72	92	85	98
TTTATGTGGGTGCACC	ref_5032_fdr	35	27	39	35	30	25	25	26	15	23
CCCCCATTGTCGTCCT	ref_5032_fdr	34	36	40	50	26	29	27	44	35	40
GCAATCGCGATCAATA	ref_5032_fdr	22	22	16	25	29	30	13	23	18	21
TGCGGCTTTGTTAACG	ref_5032_fdr	259	267	343	297	250	257	267	247	308	240
TAGTGAGTATCTTTAC	ref_5032_fdr	9	26	20	8	11	12	24	10	12	11
TCGTTCAAATGTGCTG	ref_5032_fdr	25	28	32	43	39	21	29	42	38	22
TCCGGGGGTAGCTGCA	ref_5032_fdr	22	12	18	9	18	16	8	20	14	7
CTTTTTTTGTGGTTTA	ref_5032_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTGTTATAGTCGG	ref_5032_fdr	102	87	105	87	92	104	69	89	108	72
CATCTGCCCGGCTCAC	alt_4264_upstream	41	15	54	49	20	52	21	41	34	29
TTAGGATCATATCAAT	alt_4264_upstream	145	68	163	123	64	100	73	93	72	101
TCGTTCAGTTTAAGTC	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGCAGGTGTTTCG	alt_4264_upstream	110	63	147	127	89	119	85	110	88	124
TATTTGTTGTCGGGCC	alt_4264_upstream	74	41	83	80	40	63	40	69	49	81
CCACAAGCTATACAGG	ref_4264_upstream	135	104	193	208	115	136	116	153	103	132
TATTTGGTATATTCTC	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
TACCCTTGAGCCAGGC	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CGTCATGTGTTCCCCT	alt_4264_upstream	82	43	89	94	25	75	42	69	43	83
TAAAACATCTGATTCT	alt_4264_upstream	196	74	260	187	102	201	76	204	78	188
TAACTGTCATGCCGGA	alt_4264_upstream	299	126	337	301	153	302	144	271	155	269
GAGTAACTCTCCACCA	alt_4264_upstream	25	15	24	35	11	33	12	33	23	22
GAGAATCTTTTATGGC	alt_4264_upstream	130	43	117	105	54	96	53	94	66	116
GCCAGCCGTAGTGAGT	alt_4264_upstream	21	20	26	25	25	15	23	15	26	17
CCCCCTCGACAGTTCG	alt_4264_upstream	207	139	206	199	192	199	188	181	177	146
CGGCAGTTCTTTTTTT	alt_4264_upstream	97	52	143	138	56	114	54	139	66	102
GAGTGCCAACGACGAC	alt_4264_upstream	33	13	27	25	7	19	6	12	8	24
GCTGCGTGTAGTTCTG	alt_4264_upstream	101	55	138	93	51	93	68	98	74	101
TTCAAATATCTCTGCT	alt_4264_upstream	135	85	177	128	80	110	86	106	70	111
TTTAGACCTTCGGGTG	alt_4264_upstream	82	60	111	110	72	102	59	85	74	95
GGCCCCCCGCCACGTT	alt_4264_upstream	84	74	131	94	61	83	57	115	61	86
TTCCATCTATACCCAT	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CTACGACCGGTGTCTG	alt_4264_upstream	48	39	79	55	62	90	42	69	48	62
ATCCTTACAGCTTTAG	alt_4264_upstream	37	24	60	41	20	37	18	29	18	28
TCTTAGACATCTTCTT	alt_4264_upstream	61	29	69	67	24	47	40	66	33	71
AAGTGTAATACACATG	alt_4264_upstream	65	25	80	54	30	52	30	57	35	56
TGCTCGGTCTGTCATG	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
TATATGGAACAAGGTT	alt_4264_upstream	20	33	25	17	34	19	36	13	28	14
TATTTGCGATAGGATT	alt_4264_upstream	76	36	64	58	37	53	33	61	42	57
TTTGTATTAGTGTTCT	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTCTTCTTACGTT	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGATATTGTAATT	alt_4264_upstream	73	47	97	68	62	64	43	59	45	56
TGTCTTGGTGTCACGC	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
TAAGACTACATCCTTA	alt_4264_upstream	18	9	31	9	9	25	10	21	9	17
AACTCAATCTTTGTTT	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CTGATGGGCTGGAATT	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
AACCTGGGATCTAGCT	alt_4264_upstream	50	27	61	41	44	65	37	48	35	43
GTCTCCTCAAATATTG	alt_4264_upstream	62	38	67	70	56	56	52	67	43	60
TTCAGGTTACGTTCCC	alt_4264_upstream	35	28	52	33	36	44	28	42	27	35
ACTCGCACAATGGAGA	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CCGGGTTATCCCTCTC	alt_4264_upstream	64	38	68	66	25	60	23	49	34	55
CTCCAAAATGCGCAAT	alt_4264_upstream	13	5	4	11	3	9	3	8	5	5
AAGTACGGGTCCCCTA	alt_4264_upstream	12	10	15	15	23	11	13	9	18	14
AGGTGACCCGTCTTCG	alt_4264_upstream	34	29	47	41	15	45	22	36	21	46
CTAATTCTCCGCGAGC	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCGTACCCACGAA	alt_4264_upstream	39	20	53	38	23	47	34	49	30	33
TTTACTTAGCCTTGGT	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGGATCATAGGTA	alt_4264_upstream	12	3	4	7	3	6	3	9	4	8
TAAGAGGCTCCTTTAC	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
AAGCGCCAGATTAGGT	alt_4264_upstream	69	40	68	70	37	59	43	50	41	53
ATCACGGATGATTGTA	alt_4264_upstream	40	27	41	37	15	40	20	37	19	35
TGCATCTGGGTACATA	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGAACTACGTACA	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTAAGGTCAGAAT	alt_4264_upstream	61	38	59	58	37	67	47	53	39	60
GTTAGCTAGAGATTCT	alt_4264_upstream	64	36	77	74	38	56	46	57	39	77
GAGCTATTCACCTGGA	alt_4264_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCTTTCGACTTGA	alt_4264_upstream	14	10	14	12	8	16	6	6	8	16
GCAATGTTGCCTGGGT	alt_4264_upstream	18	19	29	27	14	19	15	11	13	18
TGAGTGAGGGATATTG	ref_3351_upstream	45	21	73	78	34	56	27	52	37	61
TCACCTTCACGATGTC	ref_3351_upstream	37	5	15	15	11	15	11	29	14	29
TCATGAAGCGACCATA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGTCCCTGCTCT	ref_3351_upstream	50	24	67	52	27	51	15	59	22	52
GTACCTAGTGTCTATC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGATGTTGATTCGGTA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
ACTTAGGCTACCGGGG	ref_3351_upstream	595	236	667	662	238	540	271	620	301	521
GGCCTCACCCTCGGGA	ref_3351_upstream	47	18	67	53	16	60	27	48	25	48
GATTCGTCTTCCAATA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGGTACGATTACG	ref_3351_upstream	143	114	162	139	91	136	108	124	108	100
CTTACGTGTGACATTC	ref_3351_upstream	50	21	50	40	16	37	15	39	9	35
TGTAACGAGCCGTGGG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GACAAGGCCCAGGGCT	ref_3351_upstream	21	6	29	29	7	18	5	31	8	30
CGCGCTTAGAGTCAAG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
ATTGGAGCTTTCAACA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GCACGCTGTCAGCAGG	ref_3351_upstream	20	11	43	22	13	30	12	26	17	20
AAGTATGATTTCATGC	ref_3351_upstream	335	102	404	352	94	339	127	329	126	338
AGGATCCATCCGGTAC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CGATATCTCGTTTGTT	ref_3351_upstream	224	64	262	261	75	229	88	202	95	212
GTCTGTACGCGAATCG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTTACCAGATCT	ref_3351_upstream	183	68	224	162	44	179	72	189	70	168
GTCGTTTTTTTGTGCA	ref_3351_upstream	35	19	47	42	13	37	32	47	18	33
GCATTACTCGGTCTCC	ref_3351_upstream	112	28	133	84	34	98	26	83	40	92
GCTTGCCAGACGAGCA	ref_3351_upstream	86	35	113	103	26	78	34	67	41	69
CGGTATAATGCCGATT	ref_3351_upstream	107	41	110	121	44	92	40	85	38	87
TCCAATTAAGGTTTAT	ref_3351_upstream	140	62	181	175	67	153	74	187	69	130
CAGAGGAACCGTTAGA	ref_3351_upstream	54	24	75	56	27	59	31	52	34	64
TGCGGTTGATAATGTT	ref_3351_upstream	107	35	155	117	44	102	46	113	47	95
GGGTCTGGTGATATAT	ref_3351_upstream	42	8	38	33	19	29	6	33	15	38
CAGCTTCCCAGAACGG	ref_3351_upstream	10	2	20	21	3	7	5	13	5	13
CGCGCTATGAGCATTT	ref_3351_upstream	254	93	383	321	98	287	106	311	155	233
TCAGTCGTAGCGCAGA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
AATCATGAAGCAAGGA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGGCCTTCGCGCG	ref_3351_upstream	59	45	103	79	46	69	34	56	52	70
TTATGTTGTGCACTAC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGAACAATTTCAT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTGTATGGTACCG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CTATTGAGCCTGTTTG	ref_3351_upstream	95	38	116	111	50	111	40	99	37	90
TATGTGTCCGCAATAC	ref_3351_upstream	299	114	357	310	108	269	142	225	134	258
AGTACATATATATTGA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGTTTTCATGGCA	ref_3351_upstream	291	92	343	297	80	248	87	236	92	221
CGTTTTCTATTCACTA	ref_3351_upstream	87	37	125	88	33	103	43	86	49	69
CGTGCCCAAATAAAGA	ref_3351_upstream	101	63	153	119	54	108	54	123	56	115
CAACTGTATAGGATCT	ref_3351_upstream	19	4	14	25	10	20	15	25	7	22
AATACAACCCTGCTCC	ref_3351_upstream	96	35	100	87	29	96	40	103	50	68
GCCAGCCAGGTGTGGG	ref_3351_upstream	10	24	19	7	19	9	16	16	15	5
GCCCTTTCGTCGCAAC	ref_3351_upstream	27	11	17	16	8	27	9	16	5	21
GATGTTGAGCTGGCAA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCCAGTAATCTCT	ref_3351_upstream	67	33	68	44	21	80	35	49	33	56
TCTCGGCTCCGTGACC	ref_3351_upstream	1	1	2	2	0	0	2	3	1	2
GAATTTTATACGTTTC	ref_3351_upstream	101	32	143	142	34	119	27	109	27	129
CCTGCCTATATAGGCC	ref_3351_upstream	112	48	159	105	61	111	50	124	77	105
CGCTAGGGGCGTTATG	ref_3351_upstream	7	3	14	9	3	16	2	10	3	5
AGTTACCCGTCGGCTC	ref_3351_upstream	79	23	82	98	30	73	35	75	39	59
TGGCAAAGTTTTAATA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
AGATGCCCCATCCAAG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCCCTCATGGATA	ref_3351_upstream	21	11	19	29	12	22	12	18	12	14
CATACTGATGGTTTCA	ref_3351_upstream	64	22	93	105	25	59	30	59	33	56
AACGGCCTAGCAACGT	ref_3351_upstream	11	3	19	16	1	14	6	16	7	11
ACTCATTCTCCCTTTT	ref_3351_upstream	10	8	14	17	7	12	0	12	9	7
ATACCTACACCTAATA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTATGGCTCTGAA	ref_3351_upstream	219	67	325	251	87	237	88	184	93	179
CTAAACCGTATGTTAA	ref_3351_upstream	50	31	67	54	28	53	27	49	15	45
AGAGCTTCTGCCTCTG	ref_3351_upstream	90	39	102	112	27	77	32	86	37	70
GAGAAACTTCTACCTG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGCCATGTTACGTACC	ref_3351_upstream	17	16	27	27	12	13	9	19	2	11
CACTTAACGTCATTTT	ref_3351_upstream	49	16	37	37	21	40	14	40	19	39
ACTTCTACAGCACATG	ref_3351_upstream	34	11	28	37	12	31	10	24	18	19
AATGCGTTTGATCTGT	ref_3351_upstream	56	18	92	66	38	79	27	68	34	57
TCATTTGGCGCTACTG	ref_3351_upstream	217	63	230	224	58	189	64	152	62	154
CCGGACCATCCTGGGC	ref_3351_upstream	7	36	14	13	26	5	36	9	28	2
TGGTGCACGTGCGCCC	ref_3351_upstream	107	53	153	146	34	117	33	128	58	96
ACGCACCATTTGAAAA	ref_3351_upstream	14	10	13	11	6	9	6	13	4	17
GTCAGCAATGTAAAGT	ref_3351_upstream	2	2	2	4	3	4	1	3	0	0
ATTTCTTTACTTCTAC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGTTGGCGCGCTT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GATCCTCGGCCTCTGA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CGTGAGCTTAGTATCT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCGGGCAGCGATT	ref_3351_upstream	140	74	208	162	70	146	85	174	60	146
TGATGGCTAACTACTC	ref_3351_upstream	41	22	61	39	9	43	16	37	17	53
CGTGTACTACTCATAG	ref_3351_upstream	153	83	192	169	85	147	87	146	80	154
TAGGTATCGTGCTTTA	ref_3351_upstream	151	54	139	133	73	123	44	98	50	138
ATTGTTGATTTGGTTA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GACTTTACACGCTCAA	ref_3351_upstream	7	3	6	5	2	1	5	4	0	5
GATTTTCTGTGTTTGA	ref_3351_upstream	108	18	119	94	26	98	26	88	37	81
TCTGAACTCCGTGTTA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CTCACCGCCAGGTTGG	ref_3351_upstream	14	19	24	16	26	8	18	24	24	21
CCGCTGAAGCTCTTCT	ref_3351_upstream	79	39	103	116	42	96	33	88	27	87
TTTACATCTATTCTAG	ref_3351_upstream	528	203	666	595	245	558	233	499	240	479
TTTCCTGCCTTGGCCG	ref_3351_upstream	194	59	247	195	78	144	65	181	98	179
GAGAAGTGGGTTAGCG	ref_3351_upstream	45	13	70	47	15	33	17	39	18	29
CAATTTCAGGACAGGC	ref_3351_upstream	90	28	139	101	33	82	22	89	37	80
TAGCCGATCAGCCGCC	ref_3351_upstream	110	59	124	111	51	99	55	104	41	109
GAACGACCGGCAGTTT	ref_3351_upstream	111	41	149	116	47	101	49	123	54	103
GAACGGTCGAGTTCCG	ref_3351_upstream	1	0	0	0	0	0	2	1	0	1
ATGTTCATGTGATCGA	ref_3351_upstream	254	100	322	244	97	225	101	248	91	230
CTTGGCTCACTTCCTC	ref_3351_upstream	93	29	99	90	35	74	34	72	39	80
TTTTGCGTATCCGGCT	ref_3351_upstream	188	76	223	216	74	133	86	189	87	160
CGATGAGGTATATGCA	ref_3351_upstream	62	24	76	57	25	68	29	58	30	66
CCTGACAAGTACGTCC	ref_3351_upstream	9	25	12	11	29	12	27	11	30	9
TGTTATCTTTGTTTGC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TTAATTCTCTTCTCTT	ref_3351_upstream	114	18	140	114	26	97	24	121	28	96
TTACCTTGTGGTTACC	ref_3351_upstream	157	51	174	164	77	158	50	147	46	140
TAGCTTGCATGCGACC	ref_3351_upstream	1146	439	1506	1266	435	1168	500	1228	471	1045
CTGACGTGGCCGTATC	ref_3351_upstream	91	40	97	84	32	85	30	77	23	74
GCCCAAAACGCTTAAG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGTATATGCATTC	ref_3351_upstream	39	12	39	41	19	36	13	27	10	32
AGGGGAGACAGATAGT	ref_3351_upstream	7	2	11	8	1	3	1	3	4	9
CTGCAGTAGACGATGT	ref_3351_upstream	85	26	76	71	31	76	42	77	33	56
TTACCTTTCTTTCCGG	ref_3351_upstream	49	14	46	42	24	48	8	47	27	43
GCTTACTTTAAGACCA	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGTCGTTCGCTTG	ref_3351_upstream	27	12	42	39	8	25	13	22	27	26
TGGGCAGGGCGTTACT	ref_3351_upstream	8	0	2	8	0	1	1	5	0	7
TAATGTCTTTGATTCC	ref_3351_upstream	167	56	194	181	68	156	63	163	69	141
GGCCTGTAAATACTTC	ref_3351_upstream	23	3	17	20	7	15	9	13	3	9
CGAGTTCACGCTGTAC	ref_3351_upstream	38	23	61	44	12	36	17	61	17	50
ATTCCTCTCCAATTGT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGCGCATCACAAA	ref_3351_upstream	5	2	8	10	3	7	2	3	1	2
TTGGATGTCCTTTGGT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
ATCACTGGGCCTACAG	ref_3351_upstream	624	219	827	743	231	671	224	719	258	585
AAAGCGTTGGGGATCG	ref_3351_upstream	50	23	67	59	21	38	20	53	14	38
CACACTTTCCGCTTGC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGTGTATGTTGGT	ref_3351_upstream	61	22	77	68	27	56	39	53	22	54
ACTGTTTTCCTTTCAC	ref_3351_upstream	100	42	118	101	30	83	40	98	38	74
TAGTTTGGATATTTTT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
CGCAGTATAAGTACTT	ref_3351_upstream	33	7	18	31	7	20	18	15	11	17
CTTGTGGTGGCCTATC	ref_3351_upstream	48	14	56	56	23	47	14	54	20	53
GAGAACGCTTGTGTCT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GTAATTGGATCACTTT	ref_3351_upstream	48	21	56	57	23	41	19	49	12	50
TACTGCGATTCCTTTT	ref_3351_upstream	133	62	154	150	53	149	51	146	47	121
GGTGCCCACTACGTTA	ref_3351_upstream	35	11	59	54	25	41	33	46	22	43
GGGTTCTCTTTATATA	ref_3351_upstream	2	0	1	2	1	0	0	2	0	0
CCTAAGGTTTTCTATT	ref_3351_upstream	71	23	69	71	36	57	37	46	26	53
AAAAATGTGGTCCTGC	ref_3351_upstream	169	73	213	174	54	165	78	187	71	141
CGTGGTCCGTGTGAGA	ref_3351_upstream	43	28	50	47	18	44	13	46	26	52
ACGCCTTGTTTGATTG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCTAGTACGAAGC	ref_3351_upstream	124	32	146	133	33	126	41	114	42	124
AGCTGGCTGTCGTAAC	ref_3351_upstream	179	68	291	195	54	180	85	178	74	174
TCTGGGCTTTTAAACT	ref_3351_upstream	49	16	33	27	8	27	11	32	20	28
TTCGTCGGAAGCCCGG	ref_3351_upstream	54	20	44	50	22	45	15	48	26	40
ACTATTTCTTCTGATT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
AACGCTATGGGACACG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GAACCTCGGAATGTGA	ref_3351_upstream	47	23	49	44	25	44	29	48	21	47
TTGCGTCTATTCGACG	ref_3351_upstream	56	22	71	51	26	67	17	47	23	55
CTCAGACCCTAGCTAG	ref_3351_upstream	25	14	37	39	20	25	9	44	13	29
TAATCAGCGGGTTAAA	ref_3351_upstream	78	24	84	88	27	98	36	55	39	63
GGGAGTTGGAACGGAC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GCATCAACGTAAGAAA	ref_3351_upstream	24	7	41	46	16	25	10	35	11	22
TCCTGGGGATGTTGAA	ref_3351_upstream	269	108	361	293	88	296	93	273	126	255
GTTGATAGTCGCAAGC	ref_3351_upstream	280	93	361	314	112	269	92	257	72	260
AAACGATTGCGAACTT	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
TTAGACAGGCTGACAG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGATTTCGGTAAA	ref_3351_upstream	289	99	359	256	100	270	88	263	89	239
CTATTCACTAGTCTCG	ref_3351_upstream	122	53	142	110	67	110	63	140	53	123
GTCGAGTGTGTTTAGC	ref_3351_upstream	10	6	18	11	2	13	6	10	4	7
CGTAGCCTGCCAGCCC	ref_3351_upstream	43	72	54	58	81	49	86	40	92	48
ACAAGGTGGTTATGGA	ref_3351_upstream	88	47	135	110	32	86	27	100	37	89
CTATGCTCAATGCCTC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTTGCACGTTCTT	ref_3351_upstream	195	74	270	207	66	147	97	182	91	164
GCCCACAGTAGGGCGT	ref_3351_upstream	11	2	8	16	2	12	2	7	6	8
CCAAAGCCTTGCTTGT	ref_3351_upstream	37	48	66	46	51	42	43	40	44	31
TCGTGAAACCGTGCGT	ref_3351_upstream	105	43	104	92	31	80	26	92	46	79
GGACTGGCAGGCATAC	ref_3351_upstream	9	2	9	6	3	8	3	15	4	3
GGATTTTTTAATCTGC	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
GGACAGCTCCTCTGGA	ref_3351_upstream	81	40	100	86	23	80	42	69	47	78
GCCCCACTTCCGTGTG	ref_3351_upstream	70	28	85	58	26	69	24	50	29	59
TGTAGATTCGGATAGG	ref_3351_upstream	42	17	50	41	10	31	16	43	17	29
ACCTTTATTCTCATTG	ref_3351_upstream	0	0	0	0	0	0	0	0	0	0
AAGAATCGTCGTAGTG	ref_3351_upstream	85	33	89	93	31	72	33	74	33	66
AATTAGCGTATAGTCG	ref_3351_upstream	49	11	61	53	23	52	20	54	35	29
TTTTTTAATTTTCGAC	ref_3351_upstream	146	39	187	150	41	127	28	149	50	129
ACGTTTACTGTGGTTA	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GCACTACACGTAACCT	ref_6014_new	104	179	105	86	160	70	173	83	194	82
CAGTATTGTATTACCG	ref_6014_new	12	18	13	5	13	10	11	8	19	6
TCCGACCCACACGAGC	ref_6014_new	0	0	0	0	0	0	0	0	0	0
TTGCCGGATTGCCGTG	ref_6014_new	39	68	50	40	85	37	88	55	101	36
AGTCTCAGGTGTGTTG	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GGCACCCGTTCACTCT	ref_6014_new	17	17	18	12	16	10	28	19	22	14
CTTCCATCTAGCCCTA	ref_6014_new	15	18	12	14	19	15	21	14	34	15
ATAGTCAAACCGTCGC	ref_6014_new	13	9	10	10	26	10	12	2	17	18
TTACACCGTGGGCTTT	ref_6014_new	6	21	14	11	12	10	17	6	19	7
TACATCATCGATGCCG	ref_6014_new	16	27	35	10	37	14	27	17	24	20
TGCTAGTGTTACGAGT	ref_6014_new	28	52	35	29	57	36	51	17	56	22
TAGCAGCAGAAAAGGT	ref_6014_new	6	4	2	6	4	1	5	3	7	3
TGTAGAGCTGCAATCT	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GTAGCTACGTGAACTT	ref_6014_new	59	92	45	36	94	51	112	39	102	43
GTAGTCAAGATATTAC	ref_6014_new	0	0	0	0	0	0	0	0	0	0
TACCTTTACTTGTACA	ref_6014_new	0	0	0	0	0	0	0	0	0	0
CGCTTCTCTTCACGCT	ref_6014_new	63	76	46	47	94	52	91	44	78	58
AGGTATAGAATTCGAT	ref_6014_new	19	30	19	7	29	14	27	21	20	12
CTCCTGCCGTGATTTC	ref_6014_new	1	7	3	3	18	5	16	4	8	6
AGGAAGTTATTCCTTA	ref_6014_new	3	13	3	0	10	1	7	4	10	2
GCCTATTTAAAATCCT	ref_6014_new	0	10	10	3	1	3	12	3	6	4
CGGCCGTTCAACTGAC	ref_6014_new	2	9	1	1	10	1	7	2	6	5
CCTTTCGTGGATGCAA	ref_6014_new	1	6	2	1	2	1	5	2	6	1
GGGGCCGTCGGTATCG	ref_6014_new	0	0	0	0	0	0	0	0	0	0
TGTATCTCGGTACCGA	ref_6014_new	0	0	0	0	0	0	0	0	0	0
CCTCGCTTCCCATCCG	ref_6014_new	9	17	13	14	5	13	14	6	15	9
CCGTGTTTAGTTGCTT	ref_6014_new	7	12	9	5	18	13	20	4	17	8
CGTACAATTTATCTCC	ref_6014_new	8	9	9	6	7	4	5	3	10	3
ACCCACGTCTTTAGTC	ref_6014_new	0	1	0	1	1	0	1	0	1	0
CGTGAGTAGCGATGTC	ref_6014_new	36	52	44	51	61	46	63	36	44	41
GCGCGGCTCCATTCGG	ref_6014_new	32	22	27	19	38	24	45	18	34	17
TGTCCCCCGGACCCTC	ref_6014_new	19	50	26	31	62	28	68	30	78	24
CTTAGTATCCACCTCA	ref_6014_new	25	46	32	26	48	30	50	27	63	20
GACTTGAATAACACGA	ref_6014_new	38	99	68	44	104	56	93	63	97	52
TCTTTTCGGTCCTGTA	ref_6014_new	0	0	0	0	0	0	0	0	0	0
AAGGTGCGCTATCGGC	ref_6014_new	67	79	56	55	90	31	106	40	81	59
ATTAGATCTCATTCTC	ref_6014_new	10	7	6	11	9	10	16	9	13	8
ATCCGCCGTACTACTC	ref_6014_new	10	12	8	6	23	6	25	4	26	10
TTAAACGACGTTTCCC	ref_6014_new	4	11	5	3	19	7	18	4	19	3
TACTCAAACGTAAGAG	ref_6014_new	5	17	12	5	20	13	17	11	20	11
ACCCTTACAAGTCTTG	ref_6014_new	47	80	47	35	86	40	65	38	78	28
GTAGATTCATGCTGCA	ref_6014_new	11	13	11	13	15	8	13	13	29	7
GGACTCCCTTTTCGCT	ref_6014_new	0	3	0	3	4	2	6	2	7	5
TTTCAATCGCCAACCC	ref_6014_new	30	52	31	26	53	23	50	27	53	21
TCAATTGGCCTGTACG	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GAAAGGCAGTTAAGTA	ref_6014_new	20	18	6	10	21	7	15	10	17	10
AACTGTAGACCATAAG	ref_6014_new	0	0	0	0	0	0	0	0	0	0
TATTAGCAGAATTAAA	ref_6014_new	2	4	8	5	3	2	2	4	10	2
CTCGCTATCCTTCGGC	ref_6014_new	5	15	11	3	17	8	29	3	16	7
AGAGCTACGGTATTTC	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GGGCCCACGGCGTCAT	ref_6014_new	10	16	15	7	6	7	17	4	13	9
CCAGTTGGGCGACGCC	ref_6014_new	3	3	2	2	1	0	2	4	0	1
CCCCATTTTGTCGTCC	ref_6014_new	0	12	1	0	13	0	16	2	11	1
CGTTTCCACTTAAATA	ref_6014_new	36	80	45	45	78	47	68	44	102	43
GGAAAAGGCCATTTGT	ref_6014_new	112	138	115	101	158	108	174	93	152	82
AGGATGGTCTACCGTT	ref_6014_new	7	32	15	12	21	15	15	16	19	10
TAAGTCCCGGTTTGGG	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GCGCGCCCAAACCTTT	ref_6014_new	30	61	38	29	68	34	61	40	67	39
CGTCCGTCTAATTCCT	ref_6014_new	8	9	8	6	2	7	9	4	5	9
ATCTTAGCGGAGGACC	ref_6014_new	18	23	18	18	24	16	26	24	33	13
CTACAACCATCGCAGG	ref_6014_new	1	6	3	1	9	5	11	6	17	1
CTACGATACACTACAT	ref_6014_new	23	25	13	13	16	22	18	17	25	15
TGGCGTTGTCTTTTGC	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GTACTTTGGTCGCTTT	ref_6014_new	50	91	63	72	102	52	97	57	94	46
TTGTTCTGTCGAAATC	ref_6014_new	16	30	12	9	15	18	16	9	25	11
CCGAATCAGGATGGCT	ref_6014_new	7	53	8	5	33	9	31	5	37	5
GCACTGGCATATGATG	ref_6014_new	38	56	52	45	68	34	61	20	74	22
GTTACACTGCGTTGTT	ref_6014_new	7	28	11	7	20	7	21	7	28	1
TTTCCAGATGCCACAT	ref_6014_new	12	18	8	5	14	6	8	11	12	5
TTTTTTGAAGTGTGAG	ref_6014_new	0	0	0	0	0	0	0	0	0	0
GGACAATGCCATGGTA	ref_6014_new	9	15	14	4	18	7	22	9	18	10
GCCAATTCCAGGTTTG	ref_6014_new	0	0	0	0	0	0	0	0	0	0
TCATTTTTCTGGTTTT	ref_6014_new	119	145	124	115	163	72	125	95	124	107
TTAACTGGGTTTACAT	ref_6014_new	10	22	13	5	9	8	15	6	13	11
GGTATCCGCAATGGAG	ref_5392_RC	174	204	181	149	183	132	193	121	206	136
TCTATTTTTCTCGGAT	ref_5392_RC	21	18	22	12	19	19	33	19	24	11
TACGGGAGAGTCTCAC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
AAACTCGTCGCCTTCG	ref_5392_RC	12	16	13	15	17	17	21	12	10	12
GTGCTTACATAGAGAG	ref_5392_RC	15	37	17	11	27	8	20	23	35	9
CTTTTGGAAAGTCTCA	ref_5392_RC	2	10	8	2	14	3	12	9	6	5
ATCAGGGGAGTCTCGG	ref_5392_RC	12	10	13	9	9	11	12	7	19	3
GTTCTCCGCTTCGGCA	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
ACGTCCGCGACCATAG	ref_5392_RC	25	26	20	17	21	7	22	2	18	9
GTATTCCTGGGCCGCA	ref_5392_RC	53	62	67	34	79	39	78	37	60	29
AAACTGATGCGTTCTG	ref_5392_RC	14	12	6	10	11	3	14	9	21	4
CAGCTGGTTTGTAAGG	ref_5392_RC	38	52	51	47	65	35	71	39	95	33
CTATGCTTGTGATTTG	ref_5392_RC	38	59	59	42	63	37	73	46	90	48
CGCTGGTCCAGGGAGA	ref_5392_RC	13	10	9	8	17	6	18	4	6	5
CCGCTGATGTCTCGTC	ref_5392_RC	2	13	0	1	7	0	13	5	13	1
GTTTTCAAGAGTAGGT	ref_5392_RC	10	7	6	8	11	5	13	4	10	4
AGCGTATTGTCCCCGG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GTGAAACTGACCGGGG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
ATTGTGTTTCTGCTGC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TTTGTCGGCCCAGTGT	ref_5392_RC	8	5	19	6	15	8	10	8	13	5
ATGCACCCATGCTTGG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TGGAGCCATCCTTGCT	ref_5392_RC	32	57	47	26	41	29	45	20	39	22
TAGTTAAGAGGTTTTT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TATTCCTGATGTGTCG	ref_5392_RC	11	22	25	14	19	16	26	23	42	20
ATCCTGTTCAGTGTCC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
CATTGTTTGGTGGTCC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
ATACTATGTCGAATGT	ref_5392_RC	32	47	53	27	53	45	57	35	51	21
CTGAGCGAATGCCAGC	ref_5392_RC	40	55	46	44	65	39	53	31	84	40
TCTGGCCTTAAACTGT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GTGTTAGCACGGTGAA	ref_5392_RC	8	30	25	16	33	14	31	9	23	16
GCGGGTCACTCCCTAG	ref_5392_RC	12	47	19	16	33	12	42	10	40	15
TGTCTCGCTGCATAGG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GGTCTCCGCGAGATTT	ref_5392_RC	25	26	22	14	31	24	21	20	29	25
TCGATTTAGCGACTTG	ref_5392_RC	9	7	15	17	8	10	18	12	16	8
TCCGCGATATGGCATC	ref_5392_RC	21	13	17	26	21	13	17	16	23	10
CTTTGTCGTGCTCACC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TGCGTACGGGTGAAGG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GGGTTTTCGATATTTC	ref_5392_RC	47	67	61	68	84	46	77	52	58	46
TCACCATCCCAAGAAT	ref_5392_RC	12	32	11	10	18	12	25	9	22	10
TGCTGTCCCCGCCAGC	ref_5392_RC	148	215	166	143	239	135	211	151	232	118
CAACGTATTCAGTATT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
AAAAAAGGATCATCAG	ref_5392_RC	57	49	57	49	55	40	47	47	53	42
GCATACGCTTTCGGGA	ref_5392_RC	46	79	57	50	77	39	77	39	73	37
TCTTCATTATGTTAAC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TTCCATAAATTAACCG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TGTTCTCCAAAAATAT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GTATGAGTGGGCGTGG	ref_5392_RC	29	30	22	12	35	15	28	19	38	16
GCGGTTCTAGAAATGC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
CCTTATGAGTAGGATT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TAGCCTTCAGTATCCC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GACAGTTCCCATCTGA	ref_5392_RC	3	1	0	0	1	0	0	0	0	0
TGTTCCATATCTGTAG	ref_5392_RC	7	11	5	8	13	6	13	5	22	9
CGTGGGCAACGTATTG	ref_5392_RC	55	77	57	45	85	55	79	50	71	38
TCTATCTAAGGCCCTC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TGGCCCCGGACAATAC	ref_5392_RC	3	7	2	1	5	3	5	1	4	2
TTGATCGCAGGTTGTT	ref_5392_RC	10	17	20	11	21	6	12	18	20	13
ATTTCGCTTATCTAGG	ref_5392_RC	2	22	5	6	9	8	14	6	11	5
TTTGGGAGCACTCCGT	ref_5392_RC	18	39	28	30	41	30	34	31	40	24
CGAAAAAAGAAATTCG	ref_5392_RC	15	15	11	19	16	16	19	13	17	10
TCCCATCACGAGCGGA	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
CGCACCATATCGAAAG	ref_5392_RC	2	18	5	5	23	2	18	2	19	3
TATCGCCGAGGTACCC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TCGCGAGGTTGTTTTC	ref_5392_RC	20	23	40	20	31	20	31	24	46	11
AGGCTATAGCAAACGA	ref_5392_RC	8	25	11	10	20	10	22	11	9	13
CAGCCCTCGTGCGCTG	ref_5392_RC	1	3	6	6	5	4	6	4	9	2
CTTGTGGTTCGTTGCA	ref_5392_RC	209	281	224	191	274	141	288	178	333	165
ACTAACGGTTCTGCTT	ref_5392_RC	0	0	0	0	0	0	0	0	1	0
AATTGGCCATGCATTG	ref_5392_RC	30	35	24	18	38	20	40	25	46	13
CTGCCTTGTCCGTAGT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
ACCAGGCCGCGATAAT	ref_5392_RC	14	26	13	19	15	19	22	17	27	12
GGACCCCGTCATTTGA	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
ATTTGGTCTCTGGACG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
AACATTTGCACAGTCG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TAGGCAAAGGGAGGTC	ref_5392_RC	42	48	48	41	63	41	53	39	51	32
CGGTCCGTCTCGTTGC	ref_5392_RC	75	89	77	59	113	59	109	62	120	61
GCATCATTTCTTTTGA	ref_5392_RC	63	104	63	53	125	67	110	63	105	70
CCAGAGTTCATGCATG	ref_5392_RC	13	30	9	14	27	13	34	7	25	13
TCATGTGGCAGGCCGT	ref_5392_RC	67	79	78	61	92	56	88	49	94	55
CTTCAAAGTCGGATAT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
AACATTCCCTCCCGTA	ref_5392_RC	3	5	5	2	11	3	4	6	3	3
AGCGACTATGTGAAGC	ref_5392_RC	19	29	17	14	34	21	32	15	19	15
CTTGATCATGTTTCGG	ref_5392_RC	11	14	17	13	17	12	11	7	10	9
TATTACGTAGTGGAAG	ref_5392_RC	0	0	0	0	2	2	2	1	2	0
TTAAAGCAAAGAATCC	ref_5392_RC	11	14	13	16	11	9	23	13	14	12
CGACTGCTTTTATCTA	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GTTTATCGTTACGGTT	ref_5392_RC	11	13	24	17	20	22	18	13	15	14
TAGAACAGATATGCAT	ref_5392_RC	75	142	117	81	153	95	147	72	145	71
CCTTTTATTACGCGCC	ref_5392_RC	62	109	70	58	95	87	89	75	132	60
GAACGTGCGTATCAAT	ref_5392_RC	11	21	14	9	25	20	25	10	32	16
GCACACCAAGGTACTT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GGTAACTTTTTTTCTT	ref_5392_RC	47	59	64	52	94	52	86	45	71	42
ATTCGCTGCTCTCAAT	ref_5392_RC	30	27	23	27	44	13	37	29	36	25
AGGCCAGGAACCGGAC	ref_5392_RC	20	18	16	19	28	16	20	15	22	15
CTCTAATTTTACTGTC	ref_5392_RC	13	12	13	15	26	23	23	21	29	14
CTTCCATACTTATTCG	ref_5392_RC	89	150	100	92	123	70	141	78	122	75
GGCTGCTATGCCGTAC	ref_5392_RC	11	11	11	8	12	5	16	6	15	11
GTTATTCTAGGTGTTT	ref_5392_RC	50	76	41	48	67	27	79	42	63	27
TGTCATTGCTAAGTGT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
ACCTTACGCAGTACTG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
AGAGCTCGTATCAATC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
CCAGTATACGATCCTA	ref_5392_RC	0	3	2	2	3	0	0	1	2	0
CTCTTATCATGCTTCG	ref_5392_RC	27	36	39	39	47	13	45	30	39	24
CGGACTACCGTGGATA	ref_5392_RC	8	16	9	3	12	5	16	2	12	5
TTTATGCGCTTAAGTA	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGCACACACCTT	ref_5392_RC	6	5	9	5	5	9	5	9	12	3
TTTAAGAGATACCATC	ref_5392_RC	14	14	14	11	11	6	6	7	17	6
AGCATCTTGCCATCTT	ref_5392_RC	6	13	8	6	16	5	17	15	20	10
CTTTCTAGGTTCTATT	ref_5392_RC	18	28	16	9	21	13	21	15	30	13
GGTAGTCGCCATTCAC	ref_5392_RC	35	16	28	47	19	25	15	49	19	26
GAGTTTGCTAATTTAT	ref_5392_RC	32	38	38	47	55	36	45	36	60	31
GATGCTAAATAAGGGC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TACAGGTTTCCGTGGC	ref_5392_RC	25	58	37	26	31	23	44	17	46	21
TATTTCGCATGCGAGG	ref_5392_RC	52	63	40	41	64	41	73	48	55	29
ATCGGCCTCCACTCCT	ref_5392_RC	136	179	209	159	208	138	229	136	240	127
GCATTCGCGATATGGG	ref_5392_RC	0	0	0	1	2	1	0	0	2	0
GTATTGGTCTTGACTG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TAACTATTGTACTTCA	ref_5392_RC	22	49	34	26	41	31	46	40	53	30
ACTGCCCTACTAGCTA	ref_5392_RC	85	177	112	87	212	82	186	83	204	79
CGCATTTCGTGTCCGA	ref_5392_RC	15	27	16	29	32	13	40	19	19	9
ATTACTTAGGGTGAAT	ref_5392_RC	31	42	40	18	54	23	43	28	33	17
GATCTAACGGCAAGTG	ref_5392_RC	18	36	29	21	35	24	39	15	40	17
GATGCTTGCCTCAGGG	ref_5392_RC	18	12	15	12	15	13	12	7	14	7
ATCGGCGTGATATTTC	ref_5392_RC	18	33	38	28	30	23	33	16	34	35
CCTGTCACCGTAGGGT	ref_5392_RC	25	71	40	22	51	27	64	29	54	24
ATTCACAGCGTTGTCA	ref_5392_RC	4	4	15	5	13	2	16	5	14	9
AGGAACAGTTGGTTTC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
AGCAGCAAGAGTCCTC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GTGGTCCGGTCGAGCA	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TCCAAACTCCTTGAGA	ref_5392_RC	59	86	61	53	91	39	99	38	113	35
AAGCGCTTCTTCCGGA	ref_5392_RC	62	102	89	70	119	52	110	57	114	61
ACTTGTCCCGTAGGAA	ref_5392_RC	39	75	43	48	72	45	69	36	71	48
GACCATGCTCTCCCGG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GGTTCTCGCTGTCTGC	ref_5392_RC	6	7	7	7	9	10	8	5	10	5
TCCATATAACCCTTGT	ref_5392_RC	3	8	10	2	5	4	9	6	8	2
TAGAGCATAACGGTAT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TCTTTCGCCCCTTCTT	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
CATTGGTCCGATTAAG	ref_5392_RC	8	22	16	21	21	16	25	24	30	18
TAAGAACGTGTTTAGT	ref_5392_RC	7	8	9	2	13	3	8	6	7	8
CAGTGGGCGCCTCGGC	ref_5392_RC	35	58	39	36	54	32	68	36	65	35
CACATTCTGTGCTTGC	ref_5392_RC	38	63	37	25	61	45	52	43	59	33
CCATCTCCTTTTTGTA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TGCATTCCGTAGGTGA	ref_5392_RC	24	36	30	22	27	11	33	17	33	25
CCGGTCATAGGGTTAA	ref_5392_RC	0	0	0	0	0	0	0	0	0	1
AGGTAGCACCTGCCGG	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
TGGTATCAAGAACTCG	ref_5392_RC	25	55	35	41	50	35	43	35	47	30
TTAAAGATTCGCCCCC	ref_5392_RC	13	15	14	13	32	11	17	20	23	16
GGTAGCATGGGTATTC	ref_5392_RC	13	39	17	28	24	22	35	12	48	16
ATTTCAGACGCTCAAC	ref_5392_RC	7	9	16	10	12	5	17	12	25	10
CTTTTTAATTCTCCTG	ref_5392_RC	74	94	95	75	110	89	120	77	136	73
CTAGCGAATTCGCGAT	ref_5392_RC	48	43	44	39	43	20	53	43	70	24
GACCCTGCTCTCCCGG	ref_5392_RC	25	95	41	34	99	39	113	34	101	36
TGGGTTTTGTCCATCC	ref_5392_RC	0	0	0	0	0	0	0	0	0	0
GGCCCGGTCGCCGCCT	ref_5392_RC	9	18	9	10	28	8	22	7	33	6
CAATGGATTTCGGTCT	ref_5392_RC	50	61	54	30	67	54	77	36	56	52
CTCATTCGTTCGGCCC	ref_6033_new	95	99	126	104	106	67	105	86	79	97
TCAATGGCTCTCCAAC	ref_6033_new	39	53	54	37	48	44	66	42	52	34
AGCGCACGTCTACTGT	ref_6033_new	27	38	33	31	29	30	34	28	39	35
AAGAACCCGTCCTCGA	ref_6033_new	1	7	12	6	9	7	9	8	8	9
GAATTCATTAGAATAG	ref_6033_new	3	4	3	4	0	1	3	1	5	4
CCTGATTTTTGGCCCT	ref_6033_new	0	10	2	6	11	2	9	1	13	0
GTTATACCCTATCACT	ref_6033_new	24	18	19	14	15	17	19	13	20	8
AAAGTAGCTGGCGACT	ref_6033_new	68	79	84	65	68	58	66	75	85	57
TCTGCGACATGGTATT	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TTATTATGAACAGGCA	ref_6033_new	105	118	123	115	119	114	127	114	145	110
AAGATAATTTCATCTA	ref_6033_new	91	64	85	79	64	63	88	71	66	72
CACTTCAGTCTCGACA	ref_6033_new	22	23	20	14	24	8	27	18	23	13
GAAGTCGCCAGACTTG	ref_6033_new	48	30	46	31	30	42	35	33	52	33
CTCAGTTGTCAATATT	ref_6033_new	13	10	10	10	12	13	12	14	10	8
CTCAAATGTGAATTTT	ref_6033_new	7	14	12	13	5	17	17	6	8	9
ACAGGCGTTATTAGAT	ref_6033_new	31	34	41	42	31	28	35	31	39	27
GAATCTTCTGGGTGCA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TGAGGGCGCCGATCGT	ref_6033_new	11	6	5	7	8	10	9	9	9	11
GTTCATCCTGGATGTC	ref_6033_new	38	54	50	52	28	37	61	41	40	39
CTGTCGTTTTGCAAAC	ref_6033_new	2	1	0	0	3	1	3	2	0	0
ACCTATCTAGAACAGT	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GTTTCCTCAGTGTGTT	ref_6033_new	5	9	8	10	13	13	5	8	13	13
TAAGAATCTGGCGCCG	ref_6033_new	52	55	73	52	52	45	59	57	56	48
TATGAGCGCGTAATAA	ref_6033_new	6	6	15	12	14	8	9	4	8	6
TATACTGACTCCATCC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
ACGGTAATCCCGGTGG	ref_6033_new	5	4	15	9	4	6	5	4	10	9
TAAGCACGTGCTTTTG	ref_6033_new	7	9	4	4	12	4	8	5	5	2
GTTAATACCATCATGT	ref_6033_new	53	72	72	57	72	62	71	57	84	44
TATATCAGTCCGGTTT	ref_6033_new	26	16	26	21	16	22	25	27	27	18
ATGTATCCCCGGGAGC	ref_6033_new	45	61	44	29	69	45	59	35	67	46
TATATACATTGTCGTT	ref_6033_new	16	30	34	20	24	24	34	7	33	17
ACTCACAAGTAAATCT	ref_6033_new	31	21	39	39	22	27	20	40	36	30
CGGGAGTCCTAAATAT	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TGGCACCGTTATGCCG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
AGTAGGCGCGTATTGA	ref_6033_new	75	82	89	78	77	73	86	90	68	60
AATATAGGATCTCTCA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GCCTTCATGATAACGA	ref_6033_new	38	37	28	27	38	29	26	29	37	23
GTTTATTTCGCCTAAA	ref_6033_new	3	10	2	4	10	1	7	5	8	5
TCCATGTAAAGGGGTT	ref_6033_new	24	22	20	10	18	13	21	11	9	17
TCTATGTACATTGTAC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CCTTGGCACGGGTAAG	ref_6033_new	40	35	46	35	37	39	46	43	53	28
TTTTTACAACCGGTGC	ref_6033_new	49	47	64	50	49	61	46	43	51	43
TTTCCTTCTGGTTCGA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CGTCAAATGGTGTGCA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TATATCGGAGTCTTAG	ref_6033_new	12	23	22	14	32	13	27	3	14	16
CAGTAAAACGATTCAT	ref_6033_new	29	29	30	35	31	32	31	22	45	33
ACAGTCGAGATACTGC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CACTGTATGTATGGTT	ref_6033_new	22	19	20	14	27	20	18	7	16	18
ATGTTTGTCTACGACC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GTATTGCTGCAGCTCG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GTTTACAGTCTCATTG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CGGGCTGATACCCTCG	ref_6033_new	66	104	86	98	88	82	77	57	75	59
CGTTATCTTAGTGTTT	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TGAGGTTGGCACTGAC	ref_6033_new	15	9	9	6	10	12	16	10	19	5
TTTAGGTGAAGCTATA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TGTTATCGGCCCGCCA	ref_6033_new	56	61	92	56	54	62	57	49	66	71
GTTATATAGCCTCAAA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CCGCCCACTGTCGATT	ref_6033_new	2	13	8	1	13	4	21	3	16	2
GTATGCTTAGCTAATA	ref_6033_new	71	51	50	45	62	58	69	51	53	54
TTATATGAAATGCTTC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TATATCGAATGCATTT	ref_6033_new	79	90	90	71	68	81	82	62	91	66
TTTGGCGAGGAAGGTG	ref_6033_new	28	20	33	20	24	37	17	26	20	21
TGCTAGGAGTATATTT	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CTGCTCACGCTGGTAA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GTAGGGACGATAGAAC	ref_6033_new	25	45	46	27	56	29	30	35	34	22
TATTAGGCTCCGCATA	ref_6033_new	14	14	11	16	19	13	16	14	24	7
TCCGTATTAGTTGCGA	ref_6033_new	29	39	52	38	42	39	64	31	44	42
ATTTTTACTCTATGAG	ref_6033_new	32	38	35	39	51	27	36	24	43	17
GCGAGATACGTTAACC	ref_6033_new	27	35	27	35	25	33	50	30	48	24
GCGCCTTAATGGGGGG	ref_6033_new	36	35	58	39	52	38	38	45	38	38
TGCTCGTACTCGTACA	ref_6033_new	50	55	66	56	52	48	46	48	56	49
AGGACTGCGGGGGACT	ref_6033_new	6	5	11	7	6	8	2	6	10	5
GTTCATTACATCCGGC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GCTTAATTCGGATTAC	ref_6033_new	7	3	10	9	8	6	5	2	6	3
ACATATAGTTACCCTC	ref_6033_new	19	28	29	19	29	25	25	17	24	25
TACTTACTTACGCTTT	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CGATAATTCTTACCGT	ref_6033_new	4	5	5	0	1	4	5	3	10	3
TATCTTAGTGGGCGTA	ref_6033_new	48	42	48	33	51	38	52	39	40	42
GAACCTTATTTTTTAG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
CGGTGTACCCCATTAG	ref_6033_new	38	44	45	47	63	37	46	34	65	31
GCTTGCCGTACTTCGT	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TGTAGGTTTTTAATAG	ref_6033_new	15	6	15	15	20	13	26	12	27	13
CAGTTTGTATCCGTTA	ref_6033_new	12	14	27	24	24	13	21	15	24	18
TAGTCCACCGCGATCA	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GCGAGGGGAGGTGACC	ref_6033_new	127	134	172	128	142	129	176	105	163	111
AACGCAGCAGGCCACA	ref_6033_new	4	3	2	3	4	7	2	2	4	3
TCCACGCTTCGAGCTT	ref_6033_new	12	18	4	16	11	5	14	6	9	8
GACGTTTCTGCATAAT	ref_6033_new	212	154	254	149	182	152	162	158	170	155
GCCACATCGATGGTTC	ref_6033_new	49	62	58	55	57	35	60	39	39	45
ACAACGAGCAATCCAT	ref_6033_new	20	17	15	17	24	15	31	20	25	28
GGCTTCTAAATTTTGC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TTCTGTCTCCACCTAA	ref_6033_new	12	26	17	8	15	20	18	7	22	7
CGCAAATACTGCCATC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TGGTACACTTTTTTTG	ref_6033_new	8	24	12	19	16	15	34	7	31	10
AATGAAACCCGCTGAC	ref_6033_new	27	44	29	28	37	30	38	19	31	37
TGAATCCATGTTAGAC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GCCTGGATGGCACGTT	ref_6033_new	14	14	21	19	23	8	26	13	23	17
AGTTAGAAGTACTGTA	ref_6033_new	10	15	12	10	14	13	19	11	12	10
AGTTTTGTGTGATTGC	ref_6033_new	22	29	40	21	27	36	30	27	43	25
GGGCTGTCGTCATTTC	ref_6033_new	11	9	17	14	6	14	10	17	12	11
TCGTGATCGGTTAGTC	ref_6033_new	77	75	98	70	78	75	66	63	84	53
TAGGTTCAGCCCAACG	ref_6033_new	17	28	29	37	38	19	41	27	29	19
CAGTTTCTTGCAGTGC	ref_6033_new	17	31	26	26	31	16	27	21	44	21
ACTACTGACGGCTCTT	ref_6033_new	14	16	16	12	13	20	11	18	10	11
CGTGTCGGATCCTAAC	ref_6033_new	0	0	0	0	0	0	0	0	0	0
ATCCCCATGACTACTG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
GATAAAAAGGTTTATT	ref_6033_new	4	1	9	6	6	4	8	4	1	4
AGCAGATGAACTTCTG	ref_6033_new	0	0	0	0	0	0	0	0	0	0
TTCCCGTAGTCGGGAT	ref_6033_new	10	19	11	9	8	17	16	11	11	11
AATTCAGTTCCACTCT	ref_6033_new	30	40	25	37	46	26	34	27	29	29
GAACTAAGACTGCGGC	ref_6033_new	10	13	8	1	7	3	4	0	6	2
AAACAAGAGCCAGTCA	ref_6033_new	3	10	12	9	11	9	10	6	3	15
TCTTTTCGGTCAACGT	ref_6033_new	68	63	95	76	95	67	94	78	104	77
GATCTTTAACCGAGGC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
AGTGGTGCGCATCGTC	alt_5634_new	10	13	8	5	10	7	10	11	10	5
CTTTTCACCATAATTC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
GAAGAAGCGGTTTTAA	alt_5634_new	8	19	13	10	22	16	18	10	16	12
CATACAAATTCGCGAT	alt_5634_new	0	4	3	3	2	1	5	1	7	3
GTCTCGCATAAAGATG	alt_5634_new	6	6	15	5	6	4	3	4	3	1
TTCTGGTCTGGGGCCA	alt_5634_new	0	0	0	0	0	0	0	0	0	0
ACGTCGTTCCTCTTTC	alt_5634_new	7	10	5	9	3	3	10	1	8	2
TTCACCTGGGTCACCT	alt_5634_new	0	0	0	0	0	0	0	0	0	0
GCCTTCTACTAAATTG	alt_5634_new	4	11	8	8	11	7	8	4	19	7
CAGTTATGTTTTCTTA	alt_5634_new	1	1	0	4	6	1	1	0	2	4
CTTGCGTATCTAGAGG	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TTCAACGAGAATTACC	alt_5634_new	4	3	13	6	6	4	7	8	18	2
TCCTTGTTAGTGTGAA	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TTCGCATGGAGGAAGG	alt_5634_new	3	6	5	5	6	5	6	3	8	8
TTTCACTGAATCTCCA	alt_5634_new	0	0	0	0	0	0	0	0	0	0
GTACGCCCTCAAGATA	alt_5634_new	12	11	11	2	10	5	10	6	10	5
CTTTGCCTTAGTAGCC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
GCGACGTCCCCTGGTT	alt_5634_new	0	1	1	0	0	1	1	2	1	0
ATCTCGTCGCTGGCGC	alt_5634_new	0	5	5	5	5	1	4	4	8	8
TGTGTGCTTATATAGG	alt_5634_new	9	13	12	4	10	5	2	4	9	2
GCGCAGTAATACTCTT	alt_5634_new	9	14	9	12	15	11	13	18	12	11
TTTGTGTATGGTGCGG	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TTTATTGGGCTGGCGG	alt_5634_new	9	17	23	13	14	10	11	8	12	6
GGGACAACATAATTCC	alt_5634_new	1	6	8	6	0	2	2	3	3	1
GGTCATCTTTGTTTTG	alt_5634_new	26	23	28	37	22	27	23	25	30	21
AAGCGACGGCCGTATC	alt_5634_new	4	6	8	6	4	3	4	2	13	6
GTCCAGTGCCAATCCT	alt_5634_new	0	0	0	0	0	0	0	0	0	0
AATTTCTCTTGCAGGT	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TTCGATGTCTTCCGGC	alt_5634_new	0	0	0	3	1	0	0	2	0	1
AGCCACTAGAGGAGTC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
CTTAGCTGTTCTTATC	alt_5634_new	7	27	14	10	26	8	26	6	19	16
GTTCCGATGGAGCCTA	alt_5634_new	2	4	1	1	4	0	5	3	4	1
TGTCGTCATCGGCTTT	alt_5634_new	5	2	5	1	4	13	6	6	4	4
TGGAAAAATCTTGAGC	alt_5634_new	6	7	10	8	19	5	7	6	10	10
CGTGTATTGGCCGAGC	alt_5634_new	33	47	40	33	54	44	50	32	57	25
GCAAATAACTAACGAA	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TGACACCAACTGCGTT	alt_5634_new	8	18	11	10	21	10	12	6	16	9
TAGTCATCATTCAATC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
GGGTGCGTCAACTGTG	alt_5634_new	8	14	11	9	16	6	20	5	20	6
CGAGAGTATTTGAATC	alt_5634_new	2	3	8	0	2	4	8	3	5	1
CTAGATGATCAAATCG	alt_5634_new	4	6	3	3	9	4	6	3	4	3
CCTCGCGCAAACCTAA	alt_5634_new	6	4	1	0	4	0	4	1	7	1
TTTTACTCGGTTGCCC	alt_5634_new	2	5	5	5	13	6	11	3	9	7
CTACGTTGACATCCGA	alt_5634_new	0	3	1	1	1	4	2	0	0	0
ATTTCAAGTAGGGTAT	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TCATGGCTGCCCCCCT	alt_5634_new	2	6	8	6	4	2	3	10	5	2
CAAATCCGCCTTCTCT	alt_5634_new	0	0	0	0	0	0	0	0	0	0
GCCGCGCGGCAGTTAG	alt_5634_new	0	0	0	0	0	0	0	0	0	0
AACAACTCTCTCCGGG	alt_5634_new	10	20	16	8	18	12	18	17	6	10
CGACCAATATTGCATC	alt_5634_new	1	3	10	2	6	2	3	4	4	0
GGTGGGCTTTAGTTAC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
GCAATAGCTGCAAACT	alt_5634_new	3	3	0	6	2	2	3	2	6	3
CTCGATCGCCATTCGC	alt_5634_new	0	0	0	0	0	0	0	0	0	0
TAAGGCTTCATCCCTC	alt_5634_new	10	20	9	20	21	17	29	8	23	18
TCATGTTGGATCGTTT	alt_5634_new	16	24	15	6	11	12	21	13	18	6
ATCTACTCGGGGGTAC	alt_5634_new	3	7	13	11	7	7	14	11	8	7
CGCGGCGGTTGACGTT	alt_5634_new	9	9	7	5	14	8	19	4	14	5
TGTCGGTTCTGTATAT	alt_5634_new	1	2	1	4	4	1	3	6	2	3
TCATTTATTAATCATG	alt_5634_new	7	14	11	7	18	9	21	10	12	14
TATTTACGTGCTGTGT	alt_5634_new	4	8	7	1	4	3	4	9	7	5
TATTTTTAGTTTCGTT	ref_5731_new	19	12	9	13	20	10	21	14	18	14
TATCTATGACTGGGGG	ref_5731_new	5	7	6	3	11	8	8	9	6	4
TGTCAAGCTGTAATTA	ref_5731_new	0	0	0	0	0	0	0	0	0	0
CCGCGCAGCGTCATTT	ref_5731_new	16	26	22	11	42	14	30	20	18	14
ATTATGCCTTGAAGCC	ref_5731_new	24	27	16	25	41	14	32	21	29	16
TCTTTGCAGCATAGTT	ref_5731_new	7	7	8	9	7	10	11	3	14	9
ATTTGTTTAGGCTTTT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GCAATTGAAGGAGAGT	ref_5731_new	33	73	41	30	49	30	58	30	46	27
TCTCCGTTCACGGCGG	ref_5731_new	0	10	3	1	3	2	8	0	4	4
AGAAGCGCCTGACATT	ref_5731_new	1	2	1	1	6	3	3	0	1	5
CAGAGCGGTTCGCATT	ref_5731_new	13	28	14	15	17	11	34	14	23	9
CTACATGGCGCAATAC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GGGCCTTCAGCCCAGG	ref_5731_new	23	43	44	26	52	38	54	35	48	34
AGTCGCGCTCAGTTAA	ref_5731_new	1	5	4	5	6	5	5	1	9	6
TTATTTCGATCCCCCG	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ACGGGGTTTGGACTGG	ref_5731_new	11	7	23	12	20	11	23	19	29	14
GTCTCTGAACTCGCGT	ref_5731_new	22	26	27	17	26	13	31	23	39	25
TACCTACCCTGGTTCA	ref_5731_new	3	12	7	3	16	8	18	5	27	5
TTACTTTGACCTACTT	ref_5731_new	10	17	9	10	14	7	18	12	19	7
GCTGCCGTTCATGTCA	ref_5731_new	6	10	6	4	11	6	5	8	4	8
TGCGGCCATATGACTG	ref_5731_new	9	31	4	10	20	13	32	13	38	5
ACCTCTAGAACAGTTG	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GTAATAAACAGTTTTC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TTTACTCAGAATCCCT	ref_5731_new	7	12	7	16	13	14	9	12	11	12
TTACTATATGAGTTTT	ref_5731_new	12	11	10	7	16	4	9	8	16	4
CATGTGCTATTATGGC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ATGATGGGAACTGGTT	ref_5731_new	15	39	23	18	22	12	31	8	29	19
TTCGTGGTTGTTTTTT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ATCAACCTCTTCCACT	ref_5731_new	24	36	21	14	41	14	52	21	41	21
TTAGACGTTGACATGT	ref_5731_new	17	28	28	26	39	29	48	19	33	22
TGCGCGTCAGTTTGCC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ATATTCGTCACACTGT	ref_5731_new	78	100	77	78	94	74	116	63	91	47
CTCTGTTCGAGGAATT	ref_5731_new	65	74	77	67	102	48	99	72	81	56
ATCCTCTTGTATCTTT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
CTTATCTATTGGGTAG	ref_5731_new	44	70	43	36	83	42	68	46	96	41
GAATCTCCTGTATTGT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TGCGATATCCCTACCT	ref_5731_new	4	5	5	3	7	2	8	3	5	2
TCAAGCTTTGGACCCC	ref_5731_new	10	10	5	7	13	6	8	6	5	3
CCATTCTCACATCTCC	ref_5731_new	10	19	9	9	18	2	16	9	23	6
CACTGTGTAGGGAGGC	ref_5731_new	39	50	33	26	39	20	47	28	35	20
CGGCAGTGGTCTAGAA	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ATCTTCGTTTTGTAAG	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GAAGGGGAAGATTCTC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ATTTCATCGCAGGTCC	ref_5731_new	27	30	22	29	38	23	27	15	30	28
TTCCAACGTGCGACTA	ref_5731_new	34	49	32	26	48	30	55	39	66	22
TAAGGTTAAATCTCCT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TAAAGATCGTGCCGAT	ref_5731_new	22	19	21	11	29	21	40	27	29	11
GTAATACTTCGATGTA	ref_5731_new	38	52	58	41	67	50	64	39	70	37
CATAGTAGTTCTCGGT	ref_5731_new	15	38	20	20	32	17	28	21	30	10
GGGGACGCTTAATGTA	ref_5731_new	2	6	5	4	8	4	4	2	7	2
CATATTTTGGGATTTA	ref_5731_new	18	16	25	12	19	9	21	14	18	20
CCCCGCCGTAGATTAT	ref_5731_new	7	29	8	8	24	1	39	6	25	8
TGTGGCCTGTCGATTG	ref_5731_new	79	115	57	71	104	52	108	68	116	52
ATGATTGCTGGGTGTT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GTTAACTTTCGGGGGG	ref_5731_new	29	33	52	17	29	23	40	21	42	19
GCCAAGGTCTGCTGTT	ref_5731_new	4	1	5	3	2	2	1	3	8	3
GCTTACAAGAGGGCTC	ref_5731_new	25	41	44	28	32	36	57	36	64	33
ACGCTTCATTATAGTG	ref_5731_new	2	2	1	1	3	2	0	3	6	4
CACACTCTAGAAAGGA	ref_5731_new	0	0	0	0	0	0	0	0	0	0
CTCGTTCTACTTACTC	ref_5731_new	5	15	5	7	18	3	15	4	9	3
ACTGTGGAAAGCCCAT	ref_5731_new	2	10	9	6	5	15	7	3	10	2
CCCCGTTGGTTGTTTC	ref_5731_new	15	55	19	24	46	20	51	19	50	12
AGAAACGGGCTGCACT	ref_5731_new	31	26	29	16	19	15	29	14	30	19
ATTGATCGAACTCGTT	ref_5731_new	18	39	26	19	40	31	36	17	44	23
TTGTGGCCCGTAGTCG	ref_5731_new	70	106	92	76	95	79	117	72	106	67
GGGGCAGCTTCGGTAT	ref_5731_new	33	40	45	49	46	36	74	35	71	28
AATCGCACGGTTAGTT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
AACTATTGCGTCACTT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
AGCTTATAATCAATTC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GATACTCCTTGGTTCT	ref_5731_new	4	5	8	3	5	1	4	6	10	3
ATAAGGTACGCATATG	ref_5731_new	9	14	11	6	16	8	18	14	20	7
TTATGGCACGTCACTG	ref_5731_new	10	16	9	7	9	4	11	5	18	3
CAAGCCTCCCAGTTAG	ref_5731_new	21	38	24	28	34	22	45	25	28	20
ATGCTTGCATACGTAC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ATTTCGATTTTCCCAA	ref_5731_new	21	46	46	28	52	32	54	31	33	37
GGCCCCAGGGAGAAGC	ref_5731_new	5	11	6	5	5	8	8	5	11	6
ATGGTTTCAGCGTTTG	ref_5731_new	7	5	17	9	14	8	21	13	15	5
GGGTCATCATTTCTCA	ref_5731_new	0	0	0	0	0	0	0	0	0	0
AAATTAATCGTTGTCT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TCCCTCCGACAGTTCA	ref_5731_new	43	57	48	27	64	42	57	34	49	34
TTCACTCGATTTCTAT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ATACACCCCAAATTTT	ref_5731_new	36	89	55	59	72	47	85	54	87	53
TGCGTACTTTTTGGTC	ref_5731_new	91	139	87	80	146	107	169	90	152	71
TTTTTACAGCGCTTCC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GCGTCGAGCCCCTACT	ref_5731_new	4	7	3	3	6	4	4	2	11	3
AGTTTCGCGAAATAAA	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ACTAAGAACTAATATC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GCCTCTGTGGGGCACC	ref_5731_new	7	19	16	23	25	16	31	8	26	14
GGTGGCTGGTCTCGTT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
AACCACTTATACCTCG	ref_5731_new	37	65	58	50	91	39	88	39	83	30
CTGTAAATACCGGATA	ref_5731_new	32	52	54	32	38	23	59	19	41	22
ATAACGGTTATTGGAT	ref_5731_new	18	22	22	13	35	20	28	16	25	19
ATCGCCCGTACGTGTC	ref_5731_new	5	11	5	3	20	1	17	2	15	8
GCGGTTTTTTGGTAGG	ref_5731_new	20	20	26	16	26	10	31	18	25	23
GCCGATTCCTGCTTAC	ref_5731_new	10	6	7	3	10	4	5	8	9	6
CCTCAAATCTATCCGA	ref_5731_new	19	36	22	29	35	21	40	22	32	24
GCCGCCCAATAAAGAG	ref_5731_new	0	0	0	0	0	0	0	0	0	0
CACGGCCTACGGCTTG	ref_5731_new	3	1	3	3	3	3	2	0	3	2
CTAGTATCCAGGACTG	ref_5731_new	5	12	4	4	9	6	4	1	11	4
TCAGTGCGTTCTATTC	ref_5731_new	31	75	44	35	62	32	66	33	89	27
AGTTTGTGCTTCTGGA	ref_5731_new	31	30	28	19	38	13	53	20	55	22
CAAGCCAGAATGCATT	ref_5731_new	20	24	24	15	28	19	36	18	27	16
GGCCTCTTAATCGGAC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GAAGTTGGTCCGCGAC	ref_5731_new	51	75	56	49	71	60	93	54	91	55
CGCGTCATAGTCTATT	ref_5731_new	37	46	25	28	73	23	56	29	55	18
GTACTTTAATAATTTT	ref_5731_new	15	25	12	14	33	10	25	15	23	12
GTCTCCTCTACTTGCA	ref_5731_new	12	31	12	11	40	13	27	11	28	13
CATTTATCGGACGGGC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TGTGTGGCATTAAAGT	ref_5731_new	24	43	34	25	47	37	49	26	42	26
CATGGGAAAGGAAGTA	ref_5731_new	6	8	7	1	12	4	11	7	6	7
GAGTGGTTAGGAACTT	ref_5731_new	45	112	63	57	120	51	103	57	136	63
CAGATATCGTCGTGTT	ref_5731_new	14	44	18	22	33	23	32	24	33	13
GCCTAAGAGACTGTGA	ref_5731_new	43	80	39	43	78	50	74	33	84	44
TTCGAGCCCATTTGAA	ref_5731_new	0	0	0	0	0	0	0	0	0	0
AGGCCAACTCAAGTTA	ref_5731_new	26	38	34	22	48	21	65	28	54	19
TGTGACGTGCTAACAG	ref_5731_new	16	35	34	17	41	15	25	28	36	26
GAACAACGTTCGGGTC	ref_5731_new	3	2	3	1	2	2	3	2	1	0
TGCATGCTGCGTACCC	ref_5731_new	7	4	15	5	5	3	12	7	7	8
AGTCTCCGCCACCGGT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GTATGGGCCTAAAATG	ref_5731_new	0	0	0	0	0	0	0	0	0	0
ACGAATTTCCTATGTC	ref_5731_new	68	105	93	95	93	56	108	67	112	74
ATCTCTAATTCTTATT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
AGCGTACTTTTTGGTC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TTGGTAGATCGTGTAT	ref_5731_new	12	32	17	21	20	23	28	14	30	5
GCAATAAAATTTGGTG	ref_5731_new	46	75	63	43	79	47	66	41	76	29
CAGGGTATGTAGCGGC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TGCATTCGCGGCTCTT	ref_5731_new	14	16	9	6	14	8	17	11	10	8
TCCACGGTTTCTGGCT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TCTGCATCATCAGACA	ref_5731_new	12	22	11	7	12	12	16	13	18	11
CTCTGACATTGTCGGG	ref_5731_new	2	8	3	2	2	7	6	5	11	4
TCTATGACCAGAATAT	ref_5731_new	0	0	0	0	0	0	0	0	0	0
TTTTGCCTAGTACTCC	ref_5731_new	0	0	0	0	0	0	0	0	0	0
GAAAGATCCGGGGGTA	ref_5731_new	6	12	12	7	19	16	22	14	16	10
TCTATCTGGTTTTATG	ref_5731_new	5	4	4	3	6	5	5	3	12	5
TTGGATTTACGGGTTA	ref_5731_new	26	32	22	21	41	20	59	24	50	16
GTCGCGCTCGCACCTC	ref_5731_new	15	16	17	7	17	14	18	8	15	11
CGCAAAATCTTGAGGT	ref_5731_new	83	141	86	90	146	72	120	58	126	64
GAGAGAACAGTGTTTG	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
TTACAGGAGTAGTGTC	alt_4391_missing	10	16	13	8	9	5	12	8	13	8
GGGTTATGCTATATCT	alt_4391_missing	10	21	17	9	22	11	23	8	25	9
ACAGTACCCTGCTTAA	alt_4391_missing	4	9	5	8	5	3	8	5	8	6
TAGCGCTGGGTCAGGT	alt_4391_missing	11	31	16	16	16	13	10	5	16	9
GGCGGACAGTCCTGGA	alt_4391_missing	25	50	42	35	47	29	35	21	40	17
TTTTTATCGTTCTAGG	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
TATGTGAAATGCCCCC	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
TAAAGCTAGCAAACAG	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
TGTAAGGGGATCACTG	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
GAGTTTTTGTTCGATA	alt_4391_missing	2	5	0	3	5	0	4	2	4	4
GGGTCGTTAGTTCAGA	alt_4391_missing	37	47	29	29	48	37	48	18	55	32
CGACTTTATGGACTTG	alt_4391_missing	22	38	17	29	37	21	34	24	36	20
AAAGCATATACCTTTC	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
TCGGTCCCTCAACCTG	alt_4391_missing	30	72	20	32	77	25	58	17	80	22
GGCTAGGATTTCTGTC	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
CAGGCGTTTTGGAAGT	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
AAGTCGATGGTATCGA	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
AACCCAGAGATTTGTT	alt_4391_missing	41	67	56	46	66	42	63	46	73	35
ATGGGTCACTGCCCCA	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
CTGGGCGGCCGGTGTG	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
GCACATCTCTTTTGTA	alt_4391_missing	8	20	13	9	21	12	12	15	15	18
GAAGCCTTTTTTCTGA	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
CCGAATACGTCTAGTT	alt_4391_missing	0	2	1	2	4	0	0	1	4	1
CTAGCGTGAGCATTAA	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
GGAGATCGATGTGTAT	alt_4391_missing	10	16	12	9	10	13	20	6	15	3
TTGGTGGGTTGCTTGG	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
TTTCCTGCTACACTGT	alt_4391_missing	11	8	10	9	16	5	12	13	13	10
CCGCGTGTGCACCATG	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
GTAAGTTTACATTGTA	alt_4391_missing	0	4	0	2	3	0	3	1	1	1
GTCGGTTTTTGGCGAC	alt_4391_missing	5	11	8	8	13	5	12	2	9	4
AATGTCTACTTGCTAA	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
CGGTCCTCTCCATTTG	alt_4391_missing	10	15	8	12	18	9	22	15	21	6
GCGCCTCTCGTTCGCA	alt_4391_missing	0	0	0	0	0	0	0	0	0	0
TTTCAGCGTCGACGTT	alt_4391_missing	13	14	16	9	15	13	22	13	15	4
CCGACACTCCCATGGC	alt_4391_missing	17	46	27	13	56	14	61	17	51	9
ATATAGCATTTATTTC	alt_4391_missing	67	75	79	48	72	54	97	48	97	49
GCTGGAGACCTAGCTG	alt_4391_missing	30	52	33	26	53	30	52	21	57	22
GCGATTTGAGTTAGAC	alt_4391_missing	14	30	16	27	39	14	29	20	36	17
GATCGCTTGGGGTCGC	alt_4391_missing	12	20	4	8	14	9	25	10	27	7
TTTTCAAGTAGCAATG	alt_4391_missing	4	8	1	1	1	0	6	2	13	5
TTCTCGGGGTCGTTTG	alt_5827_new	44	67	41	49	50	46	59	36	65	40
GCGGGTTTGCTTTTTA	alt_5827_new	23	22	17	24	12	19	21	19	23	16
TTAACGCTCGAAGGCC	alt_5827_new	10	16	15	13	11	14	16	11	16	10
GCCAGCGCTCTAAGAT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GATTAGTATGCAACCA	alt_5827_new	0	0	0	0	0	0	0	0	0	0
AAAACTGAGCTCGCGA	alt_5827_new	12	16	19	9	17	15	17	13	7	16
TCTTATTGCCGCCCGC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TAAAACAGATCAAGTG	alt_5827_new	10	11	13	5	14	5	14	9	9	12
TTCATTCTACCTCGAT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
CAATATACGAATGGGG	alt_5827_new	43	54	74	39	56	42	53	37	69	40
GATCAGGCATCGGCCA	alt_5827_new	3	10	10	5	3	5	11	7	4	8
GTGCTCGCGTCTTACG	alt_5827_new	26	35	40	37	37	40	30	43	34	26
CGGCAGGACGATAATT	alt_5827_new	54	47	67	37	75	51	68	54	63	49
TACTCGCCTCACGTTT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GAAGAAGAAATTTCTG	alt_5827_new	75	92	120	82	79	70	103	95	84	75
ACGTCACCTATTGAGG	alt_5827_new	16	36	21	17	29	30	29	16	26	13
TCAACTGCTTTCTGTC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TACATTTTGTGCGCGG	alt_5827_new	22	22	24	20	23	21	17	12	26	21
AAGATTCACTTTTAGG	alt_5827_new	3	20	17	14	9	15	20	17	12	2
AGGTAATAGCAAATTT	alt_5827_new	62	89	90	69	80	72	89	57	80	56
GTTAGATAGCTCCTGT	alt_5827_new	63	71	87	58	81	70	64	43	97	59
TTCGCGCAGAACTTTT	alt_5827_new	12	21	21	15	24	32	15	9	26	20
TCCCGTTTGTAAGTTT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GGCAGCAACGTCGTCG	alt_5827_new	8	9	3	2	7	8	4	5	7	4
TATTTGCAAATCTAAG	alt_5827_new	137	183	174	155	186	140	204	121	183	114
AGTCTCATTCTAGTCC	alt_5827_new	8	21	21	15	15	11	10	12	17	12
TTAGCAACATCGGAAG	alt_5827_new	11	8	9	8	10	9	8	7	2	8
TAAGAGCGCTTTGTAT	alt_5827_new	15	10	12	19	17	12	14	21	20	15
GTTACTTGGTTCAATC	alt_5827_new	19	41	35	26	40	27	35	29	23	38
CCTCTGCTGAGAGGGT	alt_5827_new	31	32	30	24	27	30	29	21	41	27
TCCACTAACTATTTTG	alt_5827_new	18	25	26	24	28	14	30	12	28	22
AAGTCTTGCACTTTCG	alt_5827_new	48	46	63	62	64	50	71	49	58	58
CGTTTTGTACCCAAGT	alt_5827_new	43	41	38	35	51	35	55	42	55	18
GGGGATAAGCCGCTTT	alt_5827_new	53	65	62	50	60	60	61	47	48	59
GCACCAAAACAAAAGG	alt_5827_new	10	15	5	9	13	6	12	10	8	6
GCTTCGTCGTTCCTGT	alt_5827_new	9	2	7	6	3	5	5	3	9	0
GTCAAGGCGGCTTACA	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TAGATTGTCTCCAATA	alt_5827_new	20	38	35	29	29	19	30	22	33	19
GCTTCTTTTTTTACTG	alt_5827_new	14	15	20	24	22	11	30	19	26	20
CCTTGTTATTTATTAA	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TTGTCAGTTTTCTTAT	alt_5827_new	30	27	40	30	53	26	37	37	45	30
AAAAAATTCACCGTTT	alt_5827_new	234	220	312	234	250	237	248	219	233	239
GCGTCCGTGTTCGCTC	alt_5827_new	11	15	18	10	11	8	16	7	15	11
GCCGGCCCAACCGTCG	ref_5827_new	57	118	100	60	138	81	162	74	133	61
GCGGGCTTTCTAGTGT	alt_5827_new	18	35	21	23	21	22	32	25	21	22
CATTATCCGGGTATCG	alt_5827_new	332	406	368	329	346	330	409	284	419	291
GAGCGAGTGAGCGGAG	alt_5827_new	24	37	25	32	43	35	39	22	42	25
CGTACATCCCTCTCTC	alt_5827_new	5	11	5	3	10	1	10	0	12	1
GTTCATACGCGGTTGA	alt_5827_new	39	61	58	43	44	38	51	45	56	33
AATTTCACCCCATTCC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
AACCTGGGCTAGCTTG	alt_5827_new	36	36	34	31	35	36	31	26	51	27
GACTGCCCATAGTGGT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GTACAATTATGTCGCG	alt_5827_new	3	11	11	20	9	12	6	6	9	13
CGTCCGGCTCACTTAA	alt_5827_new	335	361	416	360	354	268	386	357	408	267
CCCCTTACGGAATATC	alt_5827_new	18	21	26	35	38	23	23	22	31	25
TGGCGTAGATTTATTC	alt_5827_new	0	0	4	4	1	2	3	0	9	0
CCGATTTGAACGCCAG	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GGTATGTGCCGAACAG	alt_5827_new	373	422	429	364	399	340	468	360	456	290
ACCCCTACTGTTGTAC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
AGCGACACATCTACGC	alt_5827_new	8	8	11	10	10	7	12	7	10	4
CCGCGTTGTCATTTTA	alt_5827_new	45	88	79	65	93	35	102	47	84	46
TCGTCGCTCAGACGGC	alt_5827_new	9	14	10	16	7	9	10	23	15	14
CGTATAACATCAGTAG	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TACTTTTAACCGATTC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GTTCGGATTGTTTTCG	ref_5827_new	228	253	303	229	298	244	287	227	273	237
TTCTCACTTTTACGGT	alt_5827_new	23	33	51	21	31	29	32	23	37	24
CTCTTGAATTTCGCGC	alt_5827_new	19	15	15	14	16	7	15	15	28	13
GGTCAATCTTTTTTTC	alt_5827_new	27	39	63	37	43	43	38	44	33	29
GGTCTTTCGTGACTAA	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TCTCGGACGCCGGGGA	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GTTTGCAGTTTGGCCA	ref_5827_new	48	59	77	61	66	40	57	55	56	41
ATAAATGCGTTACAGT	alt_5827_new	8	9	15	8	13	10	17	10	9	9
CCAGGAAAAAGTATGC	alt_5827_new	19	19	8	7	17	11	24	6	19	4
TTTTAGGTTAGCTACT	ref_5827_new	232	266	248	209	274	205	261	207	281	189
TCCGTCCCTCCTTCCC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
AGCGAAGGGAGGTTTA	alt_5827_new	67	64	67	54	72	60	68	50	73	47
TATTAGTTGTCTTCAC	alt_5827_new	8	9	20	11	8	7	13	3	14	9
GACTCGAGCTTGAGGG	alt_5827_new	20	25	27	22	20	30	25	15	24	21
ACTTATCGAACGGGAT	alt_5827_new	20	17	19	22	20	13	22	17	14	26
GTTTTCGTTGTAGCTC	alt_5827_new	41	59	64	51	46	56	81	40	76	50
TTCCATCCCGTACTGC	alt_5827_new	6	23	9	6	22	14	26	8	21	5
CTAGCTACCGCCAGTT	alt_5827_new	5	7	10	12	3	6	11	6	7	3
TGCCCTGTCCGCATAG	alt_5827_new	58	110	70	66	93	64	90	55	86	61
AAATTGTTCGACTTGT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GCTAGACCGGGTGGGC	alt_5827_new	10	13	11	6	20	12	14	7	10	5
GCACTTCTGCGTTGGT	alt_5827_new	3	3	1	6	1	2	2	1	3	5
CGCAATGTACTTTGAG	alt_5827_new	2	0	5	0	2	0	0	0	0	1
GTAACCGACGTGTCCG	alt_5827_new	141	185	166	148	175	144	201	157	208	134
CGCCTTAAATGCCAAA	alt_5827_new	40	31	48	27	43	37	43	29	42	39
TGTCGGTACGTACACC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
CTGCCTGGTAGGACTA	alt_5827_new	0	0	0	0	0	0	0	0	0	0
AAGTAATAATATTCTC	alt_5827_new	51	60	79	61	43	64	50	51	59	58
AGAACGGGACTGGCCG	ref_5827_new	0	0	0	0	0	0	0	0	0	0
TAGTTTCTCTCGTTAT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TGCAGAGTCTTGCCTT	alt_5827_new	109	128	127	116	139	90	154	92	146	83
CTGCGGGGCCTACGTC	alt_5827_new	61	121	81	74	115	81	132	62	117	75
TGTTTTTCATGTTGAT	alt_5827_new	23	27	29	20	23	24	22	21	30	12
GGTTTCTCTAATCTTG	alt_5827_new	248	312	289	261	307	274	308	228	314	239
GATTTGTCTACATTAA	alt_5827_new	40	54	46	35	53	28	55	30	54	26
CCGTGTTTTCTCTATC	alt_5827_new	36	48	36	48	39	37	37	35	50	40
CCTGATCTCTATGGGG	alt_5827_new	0	0	0	0	0	0	0	0	0	0
GTAGTGCTGTAGAACT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TATGCCCCCGGGCTTC	alt_5827_new	30	26	44	47	35	33	37	32	43	28
CCTCTTTATCTCCATC	alt_5827_new	14	14	31	27	13	14	24	36	21	17
GTTTCATAGCGTGTCC	alt_5827_new	0	0	0	0	0	0	0	0	0	0
CGCGTTAGAACGTCTA	alt_5827_new	7	8	4	4	10	0	1	4	5	3
CCGTGGGGCGGCTACG	alt_5827_new	0	0	0	0	0	0	0	0	0	0
CCTGGTCCTCGACATG	ref_5827_new	0	0	0	0	0	0	0	0	0	0
CACCCGAATTTCTATT	alt_5827_new	0	0	0	0	0	0	0	0	0	0
CTGGAAATGTTCGGAG	alt_5827_new	120	147	155	122	136	120	147	111	152	115
ACTAAATGCCTCTTCA	alt_5827_new	39	29	52	34	30	33	42	33	42	26
TAGCACTGGGTCATAG	alt_5827_new	0	0	0	0	0	0	0	0	0	0
AAAGATGCTGGTGTTG	alt_5827_new	0	0	0	0	0	0	0	0	0	0
TTAGGGTTCTTGAGGG	alt_5827_new	17	17	28	16	22	10	17	13	22	12
CGAGGACAGCATACAA	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
TATATACTATGGTTCA	ref_5061_reverse	5	5	3	5	4	2	7	2	1	3
ATAGATGAGAAAGGGA	ref_5061_reverse	37	40	32	38	30	20	51	29	39	33
TTGATATGCTTCATGA	ref_5061_reverse	44	45	43	46	50	31	46	28	59	30
AGGGATAGTTTAATTA	ref_5061_reverse	37	23	35	45	37	22	26	36	32	39
TTCGTTTTGGTGATCG	ref_5061_reverse	77	117	141	89	111	84	121	74	101	105
AGAACTATCCAGGGCT	ref_5061_reverse	277	315	329	258	344	283	374	229	303	242
CGCATCTTGCTTACCG	ref_5061_reverse	3	5	2	3	4	3	4	3	5	0
CCGTCCTCTATTCCTC	ref_5061_reverse	37	31	51	44	44	37	49	32	46	34
ATTTCCAGAGTCAGCG	ref_5061_reverse	71	96	79	70	93	66	90	60	79	59
CACTGGCGCTACTGTA	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
CACTTGGAAGGTATTT	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
TTCTACCGTCACTTTC	ref_5061_reverse	24	21	32	26	29	17	21	19	33	16
TCATTATTCGTGTACT	ref_5061_reverse	92	104	103	72	94	62	89	57	120	73
TATGCCACAGGCTCAT	ref_5061_reverse	38	43	61	34	58	26	50	32	48	36
TCCTCTCAAGCAGACC	ref_5061_reverse	14	23	18	14	7	12	16	16	15	8
GGCCCAGAACAACTGG	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCGTGACTGATAG	ref_5061_reverse	15	11	6	10	22	11	17	12	14	13
GAAGCAAATGTTTTTT	ref_5061_reverse	16	38	31	30	29	19	37	24	33	26
GTCTGTTTACTGAGCA	ref_5061_reverse	104	163	170	130	165	136	176	107	188	108
TCGGTGAATCTCAAGG	ref_5061_reverse	208	217	219	176	256	163	215	200	274	102
GACTCTTTCCTTACTG	ref_5061_reverse	3	7	6	6	5	13	7	3	8	3
GGCGTTTCCCGCTAGT	ref_5061_reverse	73	103	117	107	97	87	107	81	104	83
TCAACTATGCAGCACT	ref_5061_reverse	56	71	59	63	66	66	68	75	62	55
CTGCCGTCTGAACGCT	ref_5061_reverse	7	20	12	19	18	14	17	12	28	6
TGGCCCTAGGGTAACC	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCCTCCTGGACAA	ref_5061_reverse	13	17	13	14	16	12	9	12	19	10
TGGGCTAAAGAGTAAG	ref_5061_reverse	51	65	76	45	61	44	53	52	59	57
GCGGTTATCTGTCTGA	ref_5061_reverse	82	113	106	77	105	86	130	85	112	76
AGGGTATATAAACTTA	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
CATTGCAATACGGGCA	ref_5061_reverse	56	45	55	45	50	48	56	46	52	43
ATATAAGTATCTCGGA	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
AATTTGCTTGGCCCCC	ref_5061_reverse	65	95	83	56	87	58	81	69	113	62
TGTAGTGTCTCGGCGA	ref_5061_reverse	14	24	17	22	17	14	24	12	15	8
CGTGCAGCTCCGGGCT	ref_5061_reverse	10	10	16	9	17	11	9	19	19	10
CCAGACCTTGCTGGGC	ref_5061_reverse	38	180	60	51	195	40	191	60	194	31
CCCCGGGAGATTCTAG	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCTCCAGGGCCTC	ref_5061_reverse	4	6	12	13	5	8	11	9	9	6
TAACATTAAACGGCCC	ref_5061_reverse	30	34	34	35	21	34	30	21	21	22
TGATTGGGGAGGTTCA	ref_5061_reverse	28	42	22	22	30	24	31	19	20	20
TCCTCTTAACCTTACG	ref_5061_reverse	24	24	35	32	29	21	36	14	31	24
CTACGGGCCGATGGGG	ref_5061_reverse	97	109	135	97	113	112	116	92	124	76
ATTGGTATTACCGGAT	ref_5061_reverse	30	64	29	40	45	41	40	35	41	30
TTATCCTTAAATGAAC	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
TGATTGCGTGGGTCAA	ref_5061_reverse	22	12	21	25	27	19	16	11	24	12
GGGACAAAGATAGCGT	ref_5061_reverse	47	51	57	58	53	43	46	39	74	42
GTAGCGAGGGAGTCTT	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGGAATCATTCTC	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
TACATTAAAAGGTTCA	ref_5061_reverse	16	34	31	30	18	34	24	23	20	17
TAGGTCATGGGAAGGT	ref_5061_reverse	5	6	4	8	5	6	3	10	6	1
ATTGAGGCAACTACCA	ref_5061_reverse	32	77	57	50	40	55	61	36	60	32
AGAACTACCCAGGGCT	ref_5061_reverse	0	0	0	1	0	0	0	0	0	0
GTATAGACTGCAGTGT	ref_5061_reverse	102	134	145	107	154	82	160	110	159	74
ATGATTCCGCTATTAA	ref_5061_reverse	87	108	106	101	94	80	98	90	113	89
TAACTTAGGGTTTCCG	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAAGTCCTGAATT	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
ATATGAGTATCTCGGA	ref_5061_reverse	5	8	12	7	9	11	14	9	13	7
CCTTCGGCTATTTGTA	ref_5061_reverse	13	15	19	17	19	12	24	17	15	10
ATATAAGGTCAATCTC	ref_5061_reverse	40	49	46	52	57	39	65	47	64	42
GCCCGGATTCCCATTC	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
CAATCCATGAGATCTT	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
CCCTATGTAGCGGCCA	ref_5061_reverse	0	0	0	0	0	0	0	0	0	0
TGATTAATCCCAGCGA	ref_5061_reverse	4	6	6	2	4	5	5	5	12	6
CCATTGCTGTGCAACA	ref_5061_reverse	37	73	49	57	87	35	82	43	91	42
TATATCTCTCTAGTGT	ref_5061_reverse	4	4	4	3	7	4	2	2	7	6
CAACCTAACTTCCGCG	ref_3781_reverse	7	10	16	11	11	10	12	14	9	8
TGGAAGCGCATCCCTT	ref_3781_reverse	4	4	5	8	9	3	6	10	3	3
AACGCTCAGCGTTTGG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATATATCGGTTCTCCT	ref_3781_reverse	42	42	68	54	65	51	45	35	48	44
TCCTGCCTCTGGCTTC	ref_3781_reverse	33	35	33	33	33	37	31	35	31	29
CAGGCGACCCCCCATA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTAGAGTACCCCCGCA	ref_3781_reverse	11	22	7	10	20	8	22	7	11	6
TCGTTGTAAAGCATTA	ref_3781_reverse	19	24	16	21	13	11	28	5	20	17
AACCATATGAAGGGTC	ref_3781_reverse	5	3	4	3	7	5	3	5	8	3
CATCACACCTCGTGTC	ref_3781_reverse	619	789	780	620	825	663	943	533	937	575
GCCTGGCTGTCGGCTG	ref_3781_reverse	15	13	20	14	15	12	13	7	8	13
AACAGGTACACTCGTC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TACAACTGCGCTCCGA	ref_3781_reverse	2	4	7	5	11	4	6	5	4	4
CACCAATGCCACTAAA	ref_3781_reverse	27	22	15	15	17	18	14	22	33	13
GTCGACATTCCGTTTC	ref_3781_reverse	48	46	56	45	48	39	47	30	48	40
CAACACACCTCGTGTC	ref_3781_reverse	0	0	0	0	0	0	1	0	0	0
GGTAATGACACTACCA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GGCATGGGTCCATGGA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACCACAATGGTAAGAT	ref_3781_reverse	4	10	6	6	15	8	11	2	6	5
TATGTTTCTTGGACCA	ref_3781_reverse	21	20	19	13	18	11	21	20	19	14
GCACAACACTATTATC	ref_3781_reverse	40	48	51	54	51	32	47	45	55	33
TTGTACCCAACCCACT	ref_3781_reverse	50	41	47	70	56	46	48	38	50	43
GGCCAAAGATTAAAGG	ref_3781_reverse	29	23	28	18	17	21	28	16	29	21
CGGGAGTGCTATGTCC	ref_3781_reverse	25	22	27	23	19	34	25	22	27	27
CGGGCCTGTCTTACAC	ref_3781_reverse	5	6	6	5	2	2	3	5	3	0
GGATGGCCGGTCGTCT	ref_3781_reverse	20	23	20	23	21	27	26	19	22	21
CTTCGGGCATGATTAG	ref_3781_reverse	53	49	50	46	43	50	46	43	64	46
TGACACTAAATGACGC	ref_3781_reverse	92	92	108	104	88	93	85	90	98	81
TTATTAATGTCTACTC	ref_3781_reverse	14	19	35	19	14	13	13	15	15	12
CCTAGTTCTACTCTTG	ref_3781_reverse	31	42	23	24	55	16	62	18	55	22
TAGCCTTCCGGCGCGC	ref_3781_reverse	8	12	9	8	6	7	13	4	14	13
CGACGGTCGCGCAAAG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TACCCGCTAACGACGA	ref_3781_reverse	21	29	46	38	42	22	29	22	40	30
TTCCGTATACGGTTTT	ref_3781_reverse	0	4	6	3	11	0	4	2	7	3
AAATTGCTTGATCTTG	ref_3781_reverse	26	28	27	28	17	28	23	11	32	18
TTCCGTTTGTAGCAAT	ref_3781_reverse	22	40	39	40	37	35	29	25	40	23
TCGGAGCTTGTGTATC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTCCCTAGTGGTA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCAATTGCTCTGT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTGGTACCCATTG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TATATATTGATTTTGG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTATGGGGCTCAGACA	ref_3781_reverse	15	15	15	15	18	19	22	16	23	18
CACTTTGATTTGTTTC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GATTGTGGCACCGTTT	ref_3781_reverse	32	44	46	26	48	42	42	30	45	35
GCGCGCAAAATGACCG	ref_3781_reverse	38	28	56	46	31	34	22	38	35	48
TATTCGTCTCCAGCAC	ref_3781_reverse	4	8	3	2	7	3	8	2	2	1
CTAAGCCTGATCCATC	ref_3781_reverse	76	68	101	70	95	75	94	76	99	71
CTATTTTAACGGGTGG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACAGAAATCATTTGCA	ref_3781_reverse	17	17	13	17	11	20	12	8	9	19
CAGTGTCTCAACCAAG	ref_3781_reverse	16	25	30	31	38	30	38	24	33	19
GCTTGAGCATTAGCAG	ref_3781_reverse	30	35	34	30	58	33	37	36	29	39
CCTCAGTCCCCGAAGC	ref_3781_reverse	12	25	20	22	14	18	25	17	32	12
TCAGCTCACGTGCCCA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGCGGTTGGATCC	ref_3781_reverse	27	34	40	19	40	21	22	22	30	23
CACAGTGTTGTCGGTT	ref_3781_reverse	27	18	28	24	25	21	19	11	19	17
GCGCGGTTCCCTTATG	ref_3781_reverse	38	40	38	49	52	26	55	31	57	33
CATCACACATCGTGTC	ref_3781_reverse	0	0	1	0	0	0	0	0	0	0
CTCCGGTTTCTAGGTG	ref_3781_reverse	7	7	5	4	11	7	1	1	5	4
GGTCCGGTTTATAATG	ref_3781_reverse	11	9	10	3	11	6	9	4	6	5
CCGATGTAATTATGAA	ref_3781_reverse	53	47	60	45	62	51	66	52	47	41
TGTTTTCTAGAACAGT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GCAAATCCAGGTTGCA	ref_3781_reverse	63	45	58	58	63	42	54	52	93	42
ATGTCGCATGCGGCAA	ref_3781_reverse	26	24	41	32	41	29	37	25	39	37
TTCAGTTTATATTGTA	ref_3781_reverse	13	12	12	19	13	18	20	9	14	14
ATATGCAGACAAATCT	ref_3781_reverse	20	21	32	26	23	27	20	31	37	29
AGTTGGTGCTGAGCAT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TCGATAAGATCATGAA	ref_3781_reverse	12	21	31	23	39	25	32	17	38	13
ACGTACATGCGAGACC	ref_3781_reverse	25	22	25	19	31	15	29	22	41	11
TTAATGTTTATTTATA	ref_3781_reverse	11	7	12	6	7	10	9	6	13	5
TGAATTCCGCCCCTCT	ref_3781_reverse	1	1	1	0	0	0	0	1	0	1
CCTACTAGCGATCCTG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
AACATAATCCCTTGGT	ref_3781_reverse	12	15	17	14	14	15	12	24	18	8
CATGTCCTGGATCTTT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
AGTGGTTATGAGGGTT	ref_3781_reverse	43	33	39	32	52	34	44	35	44	34
CGTTACTTAGTCATAG	ref_3781_reverse	25	29	25	26	26	18	18	29	29	23
TCTGCAATGCGTCCAT	ref_3781_reverse	65	59	74	46	71	42	56	43	60	53
GTGACTTTTTCGGGTT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCTAAGGTGTTCT	ref_3781_reverse	19	11	8	16	8	15	14	18	16	12
TTTTTGACCTTATGTG	ref_3781_reverse	5	0	1	0	1	0	0	0	0	0
AGGATCCGCCTTAGCT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTCATAGTAATC	ref_3781_reverse	8	16	16	18	12	13	17	18	21	17
CAGGCGCCCCCCCATA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTACATTAGCTCAATT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTTAATGATTTGCTTG	ref_3781_reverse	47	50	57	38	58	40	45	33	71	42
TCTCTTCATTGGCATG	ref_3781_reverse	17	17	20	11	21	24	16	15	16	10
GTGATTGATCGGCACG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
AAACGTGCTAAGGCAT	ref_3781_reverse	21	21	18	19	38	12	24	22	23	21
AGAAAGTTATGCCCGC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTGTTTAGAAATA	ref_3781_reverse	10	10	12	7	12	13	7	9	8	8
CGTTTATAGCTCTGTG	ref_3781_reverse	16	22	20	12	16	25	10	12	22	15
TTGTTACGCAACGGGC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTTCATGTTGGAAATC	ref_3781_reverse	29	40	13	18	29	39	22	23	20	19
CCTAGCCCACCTAAGC	ref_3781_reverse	1	7	2	2	3	1	5	1	5	2
ACTCCTCTCGTGTTAA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TCTAAGCCCCCCGCAC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GCCTACGTTGCGCGAC	ref_3781_reverse	26	24	22	29	29	25	31	13	24	24
CTGGCGAGTTTCGGTA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTAAACGCCCACTTTA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
AATGCTCACTGGAATG	ref_3781_reverse	59	67	76	59	82	48	73	71	59	67
TTGCCTGATTTGCGTG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGTCTTACTCTGT	ref_3781_reverse	8	13	18	19	13	10	22	13	15	11
TGAATGTTGTGCTGGC	ref_3781_reverse	13	22	25	18	19	19	11	10	27	17
TATACCGATCGTAGCT	ref_3781_reverse	8	8	6	4	17	4	9	6	17	9
CCTTCTCCGCTCGGCC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GATTTGATTACGTTTA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GGATGCTCATCACCTT	ref_3781_reverse	89	127	166	149	117	131	107	118	144	119
GGATCTGATTGTTCAT	ref_3781_reverse	50	67	81	64	72	52	70	45	76	55
CTGAGTATCGAACTAT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
GTCGACTGATCGTTAG	ref_3781_reverse	215	246	246	249	271	197	297	191	358	217
TTGTAGGGTTCCCTTA	ref_3781_reverse	105	142	137	118	154	97	155	99	174	107
TCAGAGGGAATGCCTT	ref_3781_reverse	0	1	1	1	3	1	1	0	2	1
ACTTTTCAAACCGCTT	ref_3781_reverse	19	25	23	17	21	13	26	22	31	22
TCTAAGCCCACCGCAC	ref_3781_reverse	63	87	68	76	114	50	98	73	100	47
AATCACACCTCGTGTC	ref_3781_reverse	0	0	0	0	1	0	0	0	0	0
GAAAAGAACGTGTTCT	ref_3781_reverse	7	8	12	2	7	9	4	6	7	4
TACGTTCTTCGTTGCA	ref_3781_reverse	22	23	33	18	29	20	26	17	39	15
ATAACTGTCCAGATGT	ref_3781_reverse	23	44	50	34	48	34	31	37	28	17
CATTTCAGCTTGGTCA	ref_3781_reverse	21	19	40	21	25	22	27	20	39	16
TATGTCAGATTCCCCA	ref_3781_reverse	29	41	46	42	36	34	46	40	49	30
TAAATGTAGGATTCGT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATGCCCTAGTTT	ref_3781_reverse	4	6	7	9	9	8	13	2	2	3
TATTAATTGCACCTAA	ref_3781_reverse	43	43	32	40	37	36	37	39	48	28
TCGTCCCGATCCCGTT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCATTGTGATTGC	ref_3781_reverse	29	26	30	26	30	17	32	12	23	27
CGTTTTAGATATACGG	ref_3781_reverse	7	0	19	8	4	12	2	5	1	13
TCTCCAGTATGCCAAC	ref_3781_reverse	15	14	12	9	10	17	4	10	19	11
AAAGCTCACTGGAATG	ref_3781_reverse	0	0	1	0	0	0	0	0	0	0
TCGGTAGTCGTGTCTC	ref_3781_reverse	11	20	16	11	23	12	12	9	16	11
AATGTTCACAGTAGAC	ref_3781_reverse	14	7	9	9	10	9	6	3	7	5
GCGTTATGGCGCCCGC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTCCCTTTTGATG	ref_3781_reverse	77	101	91	70	105	73	96	83	88	58
ACATCAGTGAGCTTAG	ref_3781_reverse	37	41	40	23	42	38	32	26	35	41
TCGGTCGTATAAATCA	ref_3781_reverse	145	128	154	128	121	137	129	123	136	106
CAATCCAATAAGGCGG	ref_3781_reverse	16	11	19	11	7	13	20	10	19	12
ATGCTAGGTCCTTTCC	ref_3781_reverse	4	8	2	3	1	3	7	0	8	3
TTGATTGGCACTCGGC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TGCTATTTTCCATTTG	ref_3781_reverse	6	10	7	7	11	12	5	3	7	7
TCGAACACTGACAACG	ref_3781_reverse	10	9	9	8	10	6	8	4	11	3
AAATATCTTAACTGGG	ref_3781_reverse	101	75	87	71	68	69	79	79	59	72
TTCTAGTGTGATATAG	ref_3781_reverse	38	54	71	42	66	36	64	39	60	60
ACTTACGGGACTGCAT	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
AGAATCATCTTTCGGC	ref_3781_reverse	21	18	27	23	16	21	22	15	22	13
AGGCTCGGCTTTTTGA	ref_3781_reverse	84	68	64	76	57	57	76	60	76	60
CGAATCCTAAGATGCA	ref_3781_reverse	22	23	35	32	17	26	33	20	25	25
TGCCTCACGCAGGGTC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
CGCGCCGGGCCCGGGA	ref_3781_reverse	59	53	79	60	58	38	59	38	64	47
AGGTTGGTAGGCTATG	ref_3781_reverse	21	17	31	21	34	30	34	21	37	29
CTCCATCTTTAGAATC	ref_3781_reverse	4	7	6	2	7	8	1	3	4	3
GATCCTATTGCCATTC	ref_3781_reverse	9	13	6	6	6	8	11	9	9	4
GTGGTAAGTTTCGCCT	ref_3781_reverse	5	6	11	1	2	6	3	1	6	3
AGTGGACATGATAGTG	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTAGGCTTCGACC	ref_3781_reverse	5	3	5	5	2	7	4	2	5	5
TGCTCAGCCATTGCGA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
CAACGTTTGTTTCTTG	ref_3781_reverse	48	41	32	31	37	33	36	29	49	38
AAACTAATTGGCGGCA	ref_3781_reverse	31	38	34	39	24	25	39	36	35	31
CTCCGGGTTTTACTGC	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAGCGGGATCGTC	ref_3781_reverse	0	2	2	0	0	0	1	0	0	1
TCGCCACCCATTATCT	ref_3781_reverse	28	38	37	40	28	29	47	27	49	14
AAAGTATAAGAGTTAT	ref_3781_reverse	23	20	19	15	10	14	12	16	16	6
CCCATCCCGCCTTTTT	ref_3781_reverse	37	45	50	54	29	45	58	43	55	44
TTTCCGTAGTTGTGTG	ref_3781_reverse	77	73	71	74	78	57	93	60	86	60
CTTCACCTGGTGGGGC	ref_3781_reverse	123	193	148	136	192	142	224	129	228	86
AACAAATATACTTGGT	ref_3781_reverse	201	189	231	220	184	202	194	172	203	184
CTGGCGAAGCCGTCGT	ref_3781_reverse	1	9	7	1	8	5	3	1	4	1
GTCTCGCGTAGCACGG	ref_3781_reverse	57	54	45	41	81	48	55	36	66	49
TCTATATCAGCTCTGG	ref_3781_reverse	4	13	6	6	1	5	9	3	6	8
GTCAGTCTCTACAAGA	ref_3781_reverse	7	5	1	4	3	2	1	5	5	0
TTTAGAGCAGTCGCTC	ref_3781_reverse	43	69	67	46	67	61	80	36	70	66
CGGTTTCTTTTCCTCG	ref_3781_reverse	10	15	16	23	23	12	15	11	14	10
ATTTTTTTCGCATTCG	ref_3781_reverse	60	33	44	40	38	52	51	44	50	39
AGGAGTTCGATGCAAA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATCATAACGGTTGGCG	ref_3781_reverse	84	80	68	68	90	64	82	46	85	60
ATACCATTAGGATCAT	ref_3781_reverse	11	22	10	13	21	14	19	17	19	9
AAGGATCAACTCGTCA	ref_3781_reverse	1	1	3	2	0	0	1	0	2	0
TCCTCGGCGGGAAACT	ref_3781_reverse	2	2	2	1	2	3	1	2	0	0
GTCCGAACCACGCATA	ref_3781_reverse	16	10	13	6	8	3	11	8	3	8
TTCGTGTGGCTTTCGC	ref_3781_reverse	6	11	10	9	8	9	6	5	15	8
CTGGCATTCGAGTTAT	ref_3781_reverse	27	32	32	30	34	21	31	23	36	29
TCGCAAGCTTCTCTAT	ref_3781_reverse	34	59	52	43	64	52	52	48	41	41
GGACTATTTGTAATGA	ref_3781_reverse	5	8	13	15	13	13	9	17	21	10
CATCACACCTCGTGAC	ref_3781_reverse	0	0	1	0	0	0	0	0	0	0
GATTCCACTATTACCA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTCCGGCATTAGC	ref_3781_reverse	13	21	17	9	13	15	10	9	16	7
CGCACCGTAAGCATGG	ref_3781_reverse	33	30	38	29	27	33	33	41	27	33
GGGTCTATTGCGACTA	ref_3781_reverse	0	0	0	0	0	0	0	0	0	0
ACGACCCTTCAGTCTA	ref_3781_reverse	21	25	27	25	32	23	33	15	27	18
CCACTATTTTACTGCT	ref_3781_reverse	72	76	71	72	64	59	74	46	99	48
CGCCTTCTCACCCTTG	ref_3781_reverse	2	7	2	6	4	6	3	3	2	3
CCTTACTGTATCACTA	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
CCAATTTGATTATGAT	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
AGCGGTCCTGTGACGG	ref_223_upstream	21	30	33	16	22	17	22	14	21	23
CGCTTTTGGAGAGATT	ref_223_upstream	68	59	64	43	61	50	54	39	100	55
GTACGAAACATCTGAA	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
GACCTAATATCCGCCT	ref_223_upstream	11	15	20	8	17	10	19	15	12	11
TGTATAACCTTTGTAT	ref_223_upstream	16	27	19	13	35	13	34	18	31	17
CGCGTGCAGCAATCGA	ref_223_upstream	4	4	6	4	4	7	8	5	8	4
GCCGCCCGTAGCGTTC	ref_223_upstream	45	54	56	45	59	38	63	43	71	42
TATCTCGGCAGTTATC	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
ACAGCATTTAAGACAA	ref_223_upstream	18	22	16	11	40	23	24	19	26	16
TACCTATATTCCATGG	ref_223_upstream	28	71	40	22	66	25	103	21	72	31
CCTCCGATTCTAGGAT	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
GCATCCTTGGGCTTGA	ref_223_upstream	44	57	48	40	63	56	56	48	54	34
AAATAAACTCCTTGCT	ref_223_upstream	9	6	14	8	6	3	4	2	12	10
CTGGTACTTTTGGTGC	ref_223_upstream	39	51	49	36	64	33	61	51	90	35
TTCGCTTGGAGTTCTA	ref_223_upstream	144	195	134	128	207	125	200	136	165	138
GTTCATAGCTTATCCT	ref_223_upstream	8	18	12	12	16	7	13	8	17	7
CCTCATTTCCTTCTTT	ref_223_upstream	22	49	41	34	48	45	47	35	53	34
GGATAGATTTGTATTT	ref_223_upstream	18	16	18	17	12	12	16	22	15	19
GATTGTCATCGAGTGT	ref_223_upstream	29	29	37	52	44	28	56	42	52	23
GATCCACATTTGGTTA	ref_223_upstream	3	7	10	9	8	6	8	9	3	8
TTTTTGCTCCTTGCCG	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGAGAGTGTTCT	ref_223_upstream	5	13	8	7	13	9	19	4	7	4
CATGTCCGTTCAAGAT	ref_223_upstream	47	58	55	52	59	37	48	45	48	42
AGGCTTGGTCCTATCC	ref_223_upstream	19	25	20	27	20	15	29	22	21	18
TTGTAAAATAGTTTTT	ref_223_upstream	25	19	22	21	19	13	15	23	21	10
CCTGCTGGAGTGATTT	ref_223_upstream	22	31	20	23	23	17	32	19	21	21
GCAACATTCTCCTGGC	ref_223_upstream	16	26	15	9	26	11	27	13	19	10
AATGTTAGGATCATTT	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCGTACACCGGCG	ref_223_upstream	17	64	24	27	69	27	81	16	63	17
TCCTGTTCGAAAATCT	ref_223_upstream	9	15	21	18	17	18	14	17	18	8
GCAGATATATCAGTCG	ref_223_upstream	15	25	8	16	14	16	18	11	16	8
TCTAAAAGTTAACCTA	ref_223_upstream	38	54	32	43	51	37	60	29	65	44
GCTTCGGTCAGCGCCC	ref_223_upstream	47	65	51	75	73	46	68	49	65	39
TAGCCAAGGGAACTCG	ref_223_upstream	155	195	151	139	181	148	225	105	181	125
CAAGCCGGCTCCGCGT	ref_223_upstream	35	41	20	24	46	21	53	29	44	21
TTCGATTGTGCTAAAA	ref_223_upstream	1	12	4	3	7	3	7	1	9	5
CTTTAAGGGTATTCCT	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
TGGGACGCCCCTCATC	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
GGAAGGACGAATCCTT	ref_223_upstream	7	1	2	11	8	2	7	4	6	6
TGGCAGGATCATTTAC	ref_223_upstream	17	26	26	16	31	21	22	29	52	10
TCTTTTTGCAGCAGAG	ref_223_upstream	11	19	13	11	17	10	15	6	27	6
TGTGTATTCTTTTCGT	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
GAATTGGGGAAAGGTG	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
TCACAGGGCTTCTCGT	ref_223_upstream	37	45	49	31	51	41	46	36	64	38
ACGCATTGGAACATGG	ref_223_upstream	19	25	19	18	14	23	16	15	19	20
TATAGGCCCACAGTGG	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTGAGACTCGGGA	ref_223_upstream	22	24	22	15	22	17	27	13	15	13
GCGCTTTGTCACCTTC	ref_223_upstream	14	16	21	28	26	13	37	22	31	16
TTCCTCGCTTATACTA	ref_223_upstream	23	38	30	24	25	33	33	26	29	17
TACTCTATAGTAGGAG	ref_223_upstream	3	3	3	3	6	6	6	5	17	4
GTTATCGTGTTCTGAA	ref_223_upstream	17	41	24	18	23	21	26	23	31	13
ATGAGATCGTGTACTA	ref_223_upstream	0	0	0	0	0	0	0	0	0	0
TACTTTTCCTTGTAGT	alt_1338_reverse	16	25	11	15	18	20	23	7	15	4
GTTCGCTGAACGGAAC	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTGCAGTCTAAGG	alt_1338_reverse	69	99	75	54	96	52	104	57	115	51
GGTTTATTAGTCCAAA	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
AGAAGAGATTTGACTT	alt_1338_reverse	6	18	31	18	17	21	26	10	20	12
TTCGCGGCGTCACCGG	alt_1338_reverse	284	332	358	292	329	275	368	244	339	259
GCTAAATTGAGGGTAA	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
TAAGTCCGCTATCGAT	alt_1338_reverse	11	11	8	8	14	5	8	4	16	5
CAGGTTATCATCTTTT	alt_1338_reverse	97	102	115	95	110	72	98	83	128	73
ATCAATTTATCGTGTG	alt_1338_reverse	37	54	38	35	44	39	51	16	57	35
CAGCAAGACTCGTTCT	alt_1338_reverse	4	15	12	8	11	8	14	4	12	10
GTCCTCGCCCCCGTCC	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
AACATAGTGGCATAAT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
AATAAAGAGTTCGCTC	alt_1338_reverse	18	20	14	11	19	8	23	15	15	16
GTGTACTGGCTGCCTG	alt_1338_reverse	20	22	28	15	31	16	21	17	20	16
CGACTAGTAGCGGCTC	alt_1338_reverse	75	111	114	86	107	71	118	64	125	79
ATGGTACTGGCGGAAT	alt_1338_reverse	84	99	98	87	120	73	138	97	125	77
ATGTTCACTTCTATTT	alt_1338_reverse	23	28	34	21	35	24	36	10	27	16
CGCTTTGCTAGGCCTA	alt_1338_reverse	5	9	7	7	10	3	11	4	2	1
GTGACTTATGAGTGGT	alt_1338_reverse	12	27	14	7	13	14	22	16	21	11
ACGTAGAACAGTTGAC	alt_1338_reverse	27	29	27	29	43	20	30	20	29	19
GCCGTGAGTGATACGC	alt_1338_reverse	63	95	85	87	79	67	108	83	138	65
TCTTATAACGTGCTTC	alt_1338_reverse	88	81	101	101	77	81	111	70	114	79
GATACTTCTTTCGACA	alt_1338_reverse	12	9	16	10	16	13	14	11	4	7
TCAGACGCCATTTCAG	alt_1338_reverse	4	7	11	7	3	5	11	9	11	7
CCTGTTTAGGGTATGT	alt_1338_reverse	75	109	79	66	106	67	107	69	120	68
TCTAGTTCTTTGTCTC	alt_1338_reverse	4	11	9	5	7	9	8	2	7	4
CCTTCATTTCTGCTAA	alt_1338_reverse	2	1	0	1	4	0	0	2	3	1
ATTCACCGATAGCAAA	alt_1338_reverse	61	70	75	60	76	52	95	56	91	60
GCCTATACCATTAGAC	alt_1338_reverse	8	10	7	4	7	5	12	9	4	5
TCTCTCGTGGAGTTCT	alt_1338_reverse	68	105	86	76	88	68	100	58	112	58
TTTCGATATCCCCATG	alt_1338_reverse	86	92	111	102	92	89	81	80	118	104
GGTATCTATAGAAGGG	alt_1338_reverse	25	22	25	20	23	24	35	19	38	20
GTTCACCACGTTATGT	alt_1338_reverse	91	108	103	78	103	63	87	70	96	75
GGAAGCACTCATAATA	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGGCCGGTTTTAT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
TTAATCTTAAGAGATG	alt_1338_reverse	69	85	76	70	82	76	116	73	91	64
TTGAAGGTTATTTTAT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
GAAGCTTCGATATGGT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
GACCCGTTGGTTCGCG	alt_1338_reverse	25	42	27	27	35	20	31	22	20	14
CACGGAGTCACATGTT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCCATATCCACGC	alt_1338_reverse	39	41	47	44	50	37	51	43	48	27
ATTGGCTATGGGACTT	alt_1338_reverse	19	24	17	15	30	16	32	19	28	14
AACATAATGGCATAAT	alt_1338_reverse	599	582	735	616	655	533	650	550	696	531
CTCTTCCAGGTGTACT	alt_1338_reverse	30	56	48	43	58	26	50	27	49	27
TACCGGCTTGAGGTCA	alt_1338_reverse	110	176	111	117	129	100	182	87	179	113
TAATGACAAGGTTATT	alt_1338_reverse	339	425	462	353	445	336	461	338	414	331
CTGCACTTTGTTTGTC	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCCTTACTGTGTA	alt_1338_reverse	10	18	12	5	8	9	14	15	27	8
GGTACAGGCTCTAGCA	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
TATCACTGTTTATATG	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
CAGATTGCGCGTCATA	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCATTGCTTAATA	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTCCCGTACGGCC	alt_1338_reverse	45	56	63	54	80	56	101	57	84	60
CCAGTGTTCCATCTAG	alt_1338_reverse	28	28	25	28	43	20	36	18	27	11
TATAGCGGCCCTGAGT	alt_1338_reverse	26	40	30	37	52	36	34	21	48	20
GATGCGAGCTTAGTTT	alt_1338_reverse	14	19	11	9	19	12	27	13	20	12
ATCGCGAATGTTATGG	alt_1338_reverse	2	0	1	1	0	0	0	1	2	1
GTTTTTTGTTGCGCTA	alt_1338_reverse	28	44	25	31	42	28	48	13	41	20
TCTTTTTGACTTCTCG	alt_1338_reverse	0	1	1	0	0	0	0	2	0	0
GACGAACTATATAAAT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGTTACAAGCTGG	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTCTTCTATGTTC	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
AATAGAGACTCTCTCG	alt_1338_reverse	111	177	137	102	153	100	194	117	179	102
ATAAGGCTCCCGGCTC	alt_1338_reverse	103	173	104	111	171	99	183	85	183	100
CCATCAGCCATTAACT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
TGATATGAAAATGCCT	alt_1338_reverse	35	21	34	27	41	25	44	18	30	18
GCCATTAATCCGTAAT	alt_1338_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGTATCTCTAATC	alt_1338_reverse	14	5	7	6	7	3	6	3	3	6
TTATCTAATCCTACTG	alt_1338_reverse	8	7	10	1	6	5	5	2	7	5
ATTAACTGTATAAAAC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
CGGTCCTATCGCAATA	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TAGATGTTACTGGTGT	alt_2295_RC	19	42	26	32	47	19	49	17	41	22
TTGGACCGAGGAATAC	alt_2295_RC	22	17	23	26	27	15	25	23	23	17
CGCCCCTTGGCATATT	alt_2295_RC	68	112	99	72	144	83	125	80	124	76
CACCTGTAATTGGTCA	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
CCCTTGTCGCTTCTCA	alt_2295_RC	6	5	6	5	3	4	7	4	10	4
CTAAGAACTTGTACGT	alt_2295_RC	10	11	6	7	8	13	6	3	5	9
TTAGGTCTCAATATCC	alt_2295_RC	20	25	27	20	39	25	36	14	29	20
GGTCGCTTATCGGCAA	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TTTTTATATCTTCGGA	alt_2295_RC	12	11	12	12	11	11	7	9	8	11
GCTGGTTAAGGGCTAA	alt_2295_RC	7	14	12	9	11	9	19	14	7	10
GAGACGTTCATGTTAG	alt_2295_RC	1	1	3	2	0	3	5	4	2	0
CGTCCGTTAGGCAGTG	alt_2295_RC	15	41	15	17	42	13	29	15	50	8
GCCATATAAGACGGCC	alt_2295_RC	87	76	103	74	81	62	99	71	94	63
CGGCAGGTCACGCATC	alt_2295_RC	47	39	37	28	31	36	40	35	27	22
TTCCACCCTGGGTCAG	alt_2295_RC	5	3	2	2	6	3	2	5	9	7
GCCGACTTGGAACCTA	alt_2295_RC	107	118	113	82	114	76	139	70	129	90
TTGATTCGGTTTCGGT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCTTCCGTCCCA	alt_2295_RC	65	76	63	59	78	71	64	53	84	71
ATAAAATTAGTGTGTA	alt_2295_RC	33	45	29	39	29	28	39	40	48	24
CGGTTTACTCAACACT	alt_2295_RC	4	4	9	3	3	2	5	2	8	6
GTCTCCAATTAGGGAC	alt_2295_RC	18	28	40	35	21	31	32	23	33	28
TCCCGGCCTGTCGCTA	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
GTAACGGTCTTAGGTT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
CCATAAGACACTTTTG	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
GTTACTGTGTTAAAAG	alt_2295_RC	27	38	30	27	38	26	33	36	31	24
ACGGCCGGTCTGGGTA	alt_2295_RC	5	3	9	3	10	5	10	3	3	4
TATCTCCTGACCAAGA	alt_2295_RC	6	5	9	7	6	4	14	4	2	5
CATACTGACGTTAATG	alt_2295_RC	10	13	16	16	9	15	22	4	10	8
TATGAGTGCTTACCGA	alt_2295_RC	24	21	19	17	17	15	25	6	17	7
TGGTTTTGTCCCCGCT	alt_2295_RC	29	30	40	28	44	27	40	17	43	19
CTTAGACAGAATCCGG	alt_2295_RC	14	14	6	8	25	10	14	10	13	4
TTGCAACGAATCTAAT	alt_2295_RC	35	58	63	40	37	42	52	48	51	33
TAGCTGCTTGTGTTGT	alt_2295_RC	77	108	95	79	100	97	113	96	92	87
CGAGATTACTTTAATA	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TTCTGCCGTACGAGGA	alt_2295_RC	45	38	48	38	57	40	42	32	52	38
GTTTAGTTTACCACCA	alt_2295_RC	7	11	11	5	6	11	12	5	10	8
CCGGTTACTTCGTAGA	alt_2295_RC	15	35	27	36	52	22	44	16	36	26
ATGAGGCTGGAGTTCC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
ACTCGTGGTACATGTT	alt_2295_RC	26	27	36	23	18	13	24	27	23	20
TTATGCGCGTCTGCGA	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
AGCAACGTTGACCATC	alt_2295_RC	50	78	55	66	84	57	74	42	76	47
CAAGATGTTCGTCGCT	alt_2295_RC	39	47	60	35	40	35	59	36	43	44
GAGCAACACGCTCTAG	alt_2295_RC	23	19	22	20	25	16	18	10	19	16
TGCCGTATAGTACTCG	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
ACTATTGCGCTACATC	alt_2295_RC	135	167	153	127	168	106	172	114	189	110
CCGGCTAAATCCGGGG	alt_2295_RC	36	48	44	43	49	48	49	46	68	48
CGTTCTATCTGAGACC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TAGGATTATCGTTTTA	alt_2295_RC	46	63	42	66	67	44	53	53	75	43
GTGAGTCACGGAGAGG	alt_2295_RC	247	241	296	229	231	244	227	199	243	239
TAGGGACGTGCTTGCG	alt_2295_RC	52	49	59	41	68	45	59	47	67	32
TCGGCGGGTGTAACAT	alt_2295_RC	66	95	94	98	87	105	101	73	86	70
TGTATTTAAAAGACGC	alt_2295_RC	11	16	21	14	23	17	32	25	23	20
GTCAACTCTCAGTTCC	alt_2295_RC	17	14	19	23	25	23	35	12	19	24
TTCTACTTCACTGACA	alt_2295_RC	59	76	61	70	97	64	108	54	83	73
GCCGATGCTTGCATCC	alt_2295_RC	61	56	66	50	71	46	49	59	66	70
ACAATCCTACGGGACA	alt_2295_RC	4	8	12	6	18	5	17	7	11	6
GCTCGTTCCGACGAGT	alt_2295_RC	164	239	195	176	243	144	259	157	306	135
CCACTCCGCAGGACCG	alt_2295_RC	34	29	33	34	38	20	47	34	43	25
TTGATCACAGTTAGGC	alt_2295_RC	61	94	83	75	87	71	104	75	119	59
CGGCGTTGGCACCGCC	alt_2295_RC	16	29	30	25	24	16	32	21	28	16
CGCTAGCAATACGCAC	alt_2295_RC	74	95	82	68	105	92	79	68	103	74
CCCAGTATGCGGTTTG	alt_2295_RC	24	37	25	21	47	26	33	26	53	27
TCACTAATCTGCCGCC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
GATGGGTATATCCCCG	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
AACGGAAGTGCTGTAG	alt_2295_RC	30	43	33	28	37	32	39	28	42	22
GTCTTCTCAATTCATT	alt_2295_RC	41	37	72	44	56	43	30	41	48	39
CATCTAATCTTTTAGG	alt_2295_RC	38	70	58	48	60	37	83	42	52	30
ATATAGTGTTACGCAA	alt_2295_RC	20	11	20	20	20	20	16	9	17	16
ACGGGCTGTCTCTTGC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
GCCCTCTTTTACGCAT	alt_2295_RC	6	5	5	4	8	1	17	7	7	6
ACCTCCATGAGTTTCC	alt_2295_RC	30	65	43	31	34	33	69	21	59	34
CATGTAGGTAGCGATA	alt_2295_RC	38	46	37	39	39	27	28	34	43	29
TGACATGGGCTACGGA	alt_2295_RC	6	14	20	16	10	12	8	17	16	5
CTTGGCTAGCTGAGTC	alt_2295_RC	26	31	41	26	40	34	40	39	48	30
ATTGTACGTTACCCTT	alt_2295_RC	3	9	6	3	6	6	7	5	4	10
GCTTTCACCTAGTCTC	alt_2295_RC	77	114	95	75	112	74	116	74	98	63
CTTAGTTGGGTCCGCC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
CTCTCCGTGTTCATTC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
ATTAGGCCGTGGCAAG	alt_2295_RC	103	129	114	96	115	117	122	88	149	106
TAGAAGTAGTAGATCT	alt_2295_RC	113	137	128	98	127	84	135	115	152	103
ACCTGGGTTCCTTGCC	alt_2295_RC	20	44	11	9	27	10	43	19	38	15
GCGACCTGGTATACTT	alt_2295_RC	9	13	17	8	19	12	16	16	22	8
CACGACGATGTTAGGC	alt_2295_RC	11	14	24	23	11	15	28	17	20	15
GAAATGTGATATATAC	alt_2295_RC	7	7	11	14	4	9	14	6	10	7
TGCTCTAGGTTAGTCG	alt_2295_RC	21	23	13	21	41	14	42	11	44	20
TTGTGGTTCCGTCTGA	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
ATGCTTCGCTTACACT	alt_2295_RC	10	18	13	4	14	4	8	13	8	6
TTTAAGTGTGTTTTAC	alt_2295_RC	24	25	27	22	24	20	26	15	30	11
CCACCCGTGGACCGGC	alt_2295_RC	18	28	15	9	20	12	29	8	28	11
GGGTGTATCTGATCCC	alt_2295_RC	18	87	20	19	72	20	74	29	68	18
CCTTTGGATTCCAATT	alt_2295_RC	10	1	8	4	5	2	4	2	1	6
TAGGGCACCGGTACTT	alt_2295_RC	19	32	16	20	21	17	32	21	21	24
TGAGTTGTGTTACGTT	alt_2295_RC	8	6	16	11	11	4	11	8	19	5
AACCAGGTAAAGAAGT	alt_2295_RC	3	2	3	1	3	2	5	3	3	4
CGTACTTTGCATTACT	alt_2295_RC	76	93	77	66	85	59	84	76	78	62
ATGCACCTCTAATGTC	alt_2295_RC	0	0	1	0	0	0	0	0	0	0
GCTTGACGCTCGGTGT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TAACGTTGTATTGGGC	alt_2295_RC	20	27	28	16	25	12	11	12	22	14
TGATTGACCCTAACGG	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
GCCACAATCCGTGTTC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TCCATCGGACCTCGCG	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
ACAACTACTTCGTTCT	alt_2295_RC	12	21	16	8	14	12	17	11	17	13
GAGCTGTCGCGAAGAG	alt_2295_RC	67	75	80	78	72	81	78	72	79	60
TAGTAGCTACGCATAT	alt_2295_RC	11	12	20	7	10	5	14	14	19	13
CCAATTCTATTTACCT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
ATTTCGCCTCGTTAGT	alt_2295_RC	33	39	33	38	34	39	47	34	46	24
CTGCACGCCCATGGAT	alt_2295_RC	73	83	92	60	79	86	84	78	73	52
GGGTTTATACTTCTAA	alt_2295_RC	7	9	6	9	5	5	5	5	8	3
AACCCTCGGATGTTAG	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
CTGTCAACTAGGTCTG	alt_2295_RC	48	54	47	66	64	53	101	42	64	57
GGCTACTTTGGGTTCT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TGACGCGCCTCTCGAT	alt_2295_RC	35	40	47	30	42	29	41	25	35	24
TGAAACTTGGTAGCTG	alt_2295_RC	33	44	54	45	59	27	54	33	61	35
AGTTCTTAGGCACGTC	alt_2295_RC	115	112	114	100	117	83	113	99	119	76
ATGCTGCACCAGTGAC	alt_2295_RC	83	126	89	77	106	66	118	66	129	67
GTATCAGAAACACCCT	alt_2295_RC	12	12	19	23	15	16	13	4	15	13
CTCGGCTCTTCAGAAG	alt_2295_RC	36	35	36	21	30	27	35	29	53	24
CGTGATTACTTTAATA	alt_2295_RC	198	243	193	175	212	166	246	177	276	148
TGACTGTGGCTGGCTT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TCTGGGTGCGGGCGTT	alt_2295_RC	48	48	29	27	37	35	47	35	48	29
TCTCCCCGGTGGACCC	alt_2295_RC	2	8	1	0	5	0	7	3	10	2
CAGTGGTGTCGAGGGG	alt_2295_RC	40	49	52	52	36	48	42	37	48	30
TCTTTGGCGTTCACTT	alt_2295_RC	45	52	60	51	47	40	42	37	57	36
TGCTTATCAGCAGTCC	alt_2295_RC	40	50	57	45	77	46	76	44	62	47
TGCGTGCGGCCTCATT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
CCTCTCAGTTCCGTTT	alt_2295_RC	32	40	36	44	50	30	26	33	31	29
TATAGAACTCTTGGGT	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
TCGGACAGTGCCTCCC	alt_2295_RC	0	0	0	0	0	0	0	0	0	0
ATAAACATGTGTGGTC	alt_2295_RC	30	31	38	20	40	22	44	22	39	23
TGTGTTGGGACCTCAC	alt_2295_RC	9	19	9	17	9	4	18	8	21	9
TGCAGTGCCTTATCGA	alt_2295_RC	16	18	6	11	15	20	24	10	24	7
CCTTTCGATCGGGTAG	alt_2295_RC	10	37	6	3	42	11	50	9	47	4
CGCAGCCAGCTCTCGG	alt_3315_RC	114	47	169	137	47	124	42	121	48	90
TAGAGTCGAACGGTCC	alt_3315_RC	171	65	257	174	61	168	72	177	56	151
ACGCCTGAAACACCGA	alt_3315_RC	1105	323	1275	1216	375	1095	340	1084	391	991
TGTGTTAGCGCACGGA	alt_3315_RC	49	22	64	62	11	68	21	57	24	57
TGTTTAGTGAAGAGAG	alt_3315_RC	37	21	27	36	14	25	27	38	26	27
GGACCCACGACTTTCG	alt_3315_RC	158	43	187	139	35	128	46	118	34	129
TCAAATCTCGTTCGCA	alt_3315_RC	126	31	157	154	22	113	36	133	58	106
GTTCAATACCGATACG	alt_3315_RC	24	2	35	30	9	34	18	34	14	28
ACTCTTTGTCACGCTT	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
TTATCAGTTGTACTGC	alt_3315_RC	65	20	82	70	12	59	18	58	28	52
GAGCAATCCGGGGCTG	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GTTGCGTGCTTTCCGT	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
CGAATTTAGTCTATTC	alt_3315_RC	580	224	731	634	185	558	207	517	221	545
CCGTCTCCATCCTCAG	alt_3315_RC	18	44	21	25	39	18	41	21	36	13
TCCTATTTTTCACCTG	alt_3315_RC	48	13	46	55	15	38	14	46	15	37
ACGTTTCTTTTGTGGA	alt_3315_RC	86	25	99	82	29	55	29	97	20	73
ACTGAATCATATGCTG	alt_3315_RC	56	24	101	84	22	73	33	83	41	60
TGTGCGAGACCAGGAG	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGAGTCGTGTTG	alt_3315_RC	182	66	227	191	48	148	65	167	51	138
CCGGAATTAGTATTCC	alt_3315_RC	188	52	190	162	65	175	48	143	39	143
ACTTTGTGTTTGGACT	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GTGTTCGCTATAAATA	alt_3315_RC	146	40	167	168	54	137	46	152	59	107
CCTAAACATCTTTATA	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GCTTGGCATGGGGGCT	alt_3315_RC	263	75	329	312	67	250	78	263	79	231
ATACGGGAGCCTGCTG	alt_3315_RC	93	30	134	88	29	102	30	95	34	81
GGGGATCGTCTAAATT	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
TTTCGTATGTTATGGG	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
TCAATATGGATTAAGC	alt_3315_RC	181	49	224	189	42	151	55	129	75	154
CCATCGCAGGCTGTTG	alt_3315_RC	80	21	74	78	29	60	33	57	36	71
GCGGTAAAAAATTATA	alt_3315_RC	466	129	589	506	157	467	177	499	184	408
ATTCTGTCATAAATTT	alt_3315_RC	3	1	2	3	3	2	3	4	0	2
CGGTCTGATATCGATT	alt_3315_RC	681	213	958	745	188	688	234	689	262	630
GGTCCCTCCCCAACGC	alt_3315_RC	214	58	241	173	60	178	72	186	59	198
TGCCCGTTGGGAAATA	alt_3315_RC	159	50	178	164	50	144	61	142	51	118
GTTGTAAATCGTATAA	alt_3315_RC	172	53	192	187	62	131	86	152	51	115
GGGTCCATTATTTTAC	alt_3315_RC	309	79	377	344	91	248	91	284	82	258
ATTCTCTTAGATGGAA	alt_3315_RC	16	4	11	5	2	14	0	17	9	6
TGATATGTGTTCGTTT	alt_3315_RC	213	94	342	257	92	244	89	223	95	213
ATATGCTTAATCATGA	alt_3315_RC	26	9	23	34	7	25	13	19	10	16
TTATAGGATTCCTTGT	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
ATGAGGATTAGAATTG	alt_3315_RC	154	52	183	158	45	152	56	144	46	110
ACTACGATACTTCGAC	alt_3315_RC	258	87	258	230	76	228	85	215	89	220
GCTGCGGGTTCGCTCA	alt_3315_RC	61	22	77	69	26	48	26	56	11	53
TGTCGACTGCTACTAC	alt_3315_RC	56	13	70	75	11	63	24	51	15	48
GATGCACCCCGGTTAC	alt_3315_RC	32	12	57	58	28	41	27	50	21	25
AATGTTTCAGAGGGTG	alt_3315_RC	37	10	43	30	9	28	13	38	11	23
CCTCTGTGCTTCTACA	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GGCAGCAGGGCCAATG	alt_3315_RC	58	24	99	98	24	58	21	71	21	75
CCTTGCTAACACTTTT	alt_3315_RC	325	97	344	353	84	274	116	289	113	269
TCATATTACTTCTTTC	alt_3315_RC	80	29	121	115	29	89	39	87	30	92
GAATACTTCAACGTAA	alt_3315_RC	90	24	120	87	24	84	38	73	30	72
ATAACGATGCGACATG	alt_3315_RC	34	20	34	52	20	39	11	42	17	42
CATAAGAATAGTCCAT	alt_3315_RC	164	54	195	192	59	137	40	179	52	139
CGAAATCCGTTGCCTT	alt_3315_RC	4	6	6	14	5	9	9	11	8	11
ACGCGCTTCTGCGTTG	alt_3315_RC	23	11	33	47	12	32	6	25	9	31
GTGGTTGGCGCTGTTC	alt_3315_RC	183	66	193	199	54	177	79	176	65	132
ATCATCGTTGTTTATC	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
CTGACTGCACTTGGTT	alt_3315_RC	37	15	51	51	16	43	16	31	23	28
TGGGCTGCGGATTTGT	alt_3315_RC	45	19	70	63	13	64	26	58	20	46
CGCCCGCCACTTTTTC	alt_3315_RC	554	161	681	612	142	521	175	506	166	473
TGTATACAAGTTTACG	alt_3315_RC	7	2	11	5	0	4	3	4	2	6
TAGTAACCACCAGTCG	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GTTTAGATTACAAGCG	alt_3315_RC	118	43	137	135	33	125	41	77	45	98
GAACTGAACTCTCAGG	alt_3315_RC	63	14	81	63	9	77	22	53	31	66
CGGGTAGCCGGGTTGA	alt_3315_RC	174	51	253	168	55	154	59	174	45	169
CCTGGTTTATCCATCG	alt_3315_RC	358	78	433	362	111	296	98	317	105	293
AGTATCACCCGGCAGC	alt_3315_RC	368	108	365	373	129	281	126	291	135	250
GTTCAGTATGCTTTTG	alt_3315_RC	51	29	75	110	24	68	27	75	22	48
ATCTTCAGGGCCAACA	alt_3315_RC	44	16	69	47	11	49	19	38	15	35
GGGGGGAGATATGATC	alt_3315_RC	35	9	35	24	7	38	11	22	11	16
GTTATCTTCTCGTGGC	alt_3315_RC	101	30	142	126	42	120	47	139	57	104
GTCGCCGCTAGTGCGC	alt_3315_RC	142	67	206	172	58	128	52	170	68	139
TTTAGAGACTGTCGAA	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
ACACAACCCTTCTCGT	alt_3315_RC	68	31	75	76	38	46	34	74	33	61
TCTGCTGCTCCATGCA	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
CTGGCGTGTATCTGTC	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
TTGTTAGTCCCAACGG	alt_3315_RC	30	13	41	39	8	36	8	28	9	31
TATGTGGGTAATATAT	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
ACTCTGCCATTTGGGC	alt_3315_RC	108	54	155	115	50	106	43	151	51	95
TGTAATCTGTTATCGC	alt_3315_RC	94	22	100	99	31	95	34	96	27	65
TACAAACGTATGAGAA	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GGCCCGGCTCCGATGA	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
ACGTGTATGTAAATAT	alt_3315_RC	594	196	679	638	154	612	176	638	169	527
GTACTTGCCAACTCAA	alt_3315_RC	7	5	4	8	1	14	10	12	4	6
CAACTCAAAGCTCCAG	alt_3315_RC	521	168	652	563	190	469	170	547	188	439
TATAAGAACTGGTCTG	alt_3315_RC	240	65	297	286	81	215	81	241	89	197
GATAGAGGTGCTACGG	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
TAAACTTACTATTCTT	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
GGAATGTGTCTTAGGA	alt_3315_RC	230	65	301	235	57	188	93	203	78	232
CCAGTACTCTTTCGTT	alt_3315_RC	2	2	4	10	0	1	0	6	2	5
TGAGTCATTCTAGAAC	alt_3315_RC	0	0	0	0	0	0	0	0	0	0
TGGGTCTTTTAACACC	alt_3315_RC	68	28	106	82	34	83	35	79	32	65
GTATGTATTGGCTGGG	alt_3315_RC	72	28	76	78	23	64	21	70	31	63
TCCTGATGATAGGAGT	alt_3315_RC	109	41	105	121	39	96	34	103	28	85
TCCTTGGCTGTTTCTA	alt_3315_RC	133	24	131	100	31	101	28	91	37	77
AGTATCTTCATTTCTC	alt_4079_upstream	68	37	51	52	28	42	36	60	26	58
TGTACTTCTTAAATCA	alt_4079_upstream	41	45	53	54	50	25	36	45	40	36
TGGTGACTCATAACCT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGAGGCTACTCCAGGT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GTGATCGGGTTTCCAA	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GTATTGGCCTAAGCGT	alt_4079_upstream	126	164	145	150	129	121	141	129	123	116
TCGTTAATCGATTATG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCATAATCTAGCG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTACGCATTACGT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGCACTCCCATAG	alt_4079_upstream	9	45	6	6	37	4	39	4	31	2
CCCGTTTGTCTAAAGT	alt_4079_upstream	10	5	12	17	8	10	17	15	16	16
GTTGGGTTGGATCTTC	alt_4079_upstream	5	3	5	3	4	3	2	5	7	1
TATCCGGTACTAAATG	alt_4079_upstream	1	3	0	2	0	1	0	0	2	1
CGTTCATTCCTAGCTT	alt_4079_upstream	246	214	276	243	250	220	259	196	244	201
TACAGCATCTCCTAGG	alt_4079_upstream	47	55	62	46	68	28	51	39	51	48
TGACGTTACCGAATAT	alt_4079_upstream	44	34	56	37	29	37	42	34	38	31
GTCCACCAAACGCGCG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
ATGGATACAAGGTCTG	alt_4079_upstream	72	80	80	56	69	63	79	66	72	57
GATTGCCGGTAGCAGG	alt_4079_upstream	10	10	10	16	5	8	12	10	11	4
ACAAAGTCAGTTCTTT	alt_4079_upstream	2	3	4	2	7	2	0	1	6	2
GGATCTCGTGTCTAAC	alt_4079_upstream	118	84	115	138	99	116	99	105	104	111
CGATCTTTTGAGGGTT	alt_4079_upstream	16	12	20	16	9	9	8	17	14	6
TGGCCTGGTTCATGTT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GTCATGTACCTCTGTG	alt_4079_upstream	15	27	27	19	20	11	24	16	19	21
ACTACTCGATTTCGTG	alt_4079_upstream	99	68	109	88	75	75	78	65	97	81
GTTCCGTTTATGACAC	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCTCAACCTGTTG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTTTTCCTAGGTC	alt_4079_upstream	1	2	6	4	0	3	6	0	2	0
CTCTGCACGGCACTAG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
CTGCATATATATCTGA	alt_4079_upstream	26	23	14	15	14	18	17	12	28	16
CACGCTTGTCGGCAAT	alt_4079_upstream	4	3	2	3	9	2	2	2	2	2
TTCATATCCGGCAATC	alt_4079_upstream	113	91	101	110	86	103	102	98	110	80
GAATGTGTAGAAGTCC	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTGACCGGACCTT	alt_4079_upstream	26	15	22	33	26	21	21	20	19	20
GTGGTTAGTCAGTAGC	alt_4079_upstream	17	21	29	15	24	21	16	9	18	16
CCTTACTCTTGGTAGT	alt_4079_upstream	15	16	11	14	17	14	18	16	17	15
TTAGGCTTTGTCTGCG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GCTATATGGTAAGGGG	alt_4079_upstream	67	51	66	50	55	49	71	65	65	60
CGGGAGTTTCTTGTCG	alt_4079_upstream	74	96	66	59	77	67	76	60	87	60
CCCTAATGGAAGAGGC	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TAAAATATTTCGACTG	alt_4079_upstream	126	113	158	103	102	116	116	112	106	116
GATCGTCTTGCTCCGT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTGCAGGATGCC	alt_4079_upstream	26	23	29	31	30	21	25	22	25	17
AATACGTGCCATTGAC	alt_4079_upstream	95	100	131	112	124	115	81	98	93	104
GCTTTCCTTATCGGTT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGGCCATGTTTTC	alt_4079_upstream	21	17	34	41	28	21	25	24	18	30
CTTCCCCTTGTACATT	alt_4079_upstream	21	35	27	31	34	21	41	28	36	16
AACAGACGGTGGGAAG	alt_4079_upstream	48	45	57	47	36	56	49	50	52	43
CCAACCCAGCAGCGTA	alt_4079_upstream	20	9	13	13	9	11	7	7	12	12
TAGGATCCCACCGACA	alt_4079_upstream	160	104	188	172	120	153	149	155	134	140
GAATATCCCCCGTTAA	alt_4079_upstream	23	16	31	24	26	19	16	25	16	21
GCCTATCGTCGTTTTG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCATAGTTCCGCT	alt_4079_upstream	86	86	110	72	74	79	74	70	89	68
GGTTCGGGTCTGCTTA	alt_4079_upstream	28	33	36	30	30	40	38	24	30	17
GGTACCAGTTTCGTGA	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTTAACATCAACA	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCAGTTAAGCAT	alt_4079_upstream	15	16	24	25	15	14	17	15	13	11
TTGTAATTTCCAAAGT	alt_4079_upstream	73	42	79	73	61	79	57	74	65	60
GTGACATGGCCGTTGG	alt_4079_upstream	41	43	53	50	45	38	55	52	36	30
CGCCTTGATCGGACCA	alt_4079_upstream	52	62	64	62	54	54	57	59	60	42
TCCGGCGACCTGTAGG	alt_4079_upstream	50	65	62	48	63	41	62	36	62	29
GCTGGGTATATAACTA	alt_4079_upstream	68	66	107	81	77	74	101	74	83	59
CGGTTGTCCTCCGATT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TTAGACCCTGTCTTGG	alt_4079_upstream	52	54	72	56	56	47	66	34	51	34
TGAGTCCATACTGAGG	alt_4079_upstream	81	74	89	102	97	98	80	80	80	71
GGCTTATGGCTTCGGG	alt_4079_upstream	67	53	98	67	56	60	65	55	78	85
TTGCCCCGTATCCGCA	alt_4079_upstream	64	57	72	52	54	47	57	61	53	43
TTTACTTACTGTCCTG	alt_4079_upstream	105	87	124	90	101	93	103	90	116	93
CGTGACGACAATCCAA	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCTGTAGATTTTG	alt_4079_upstream	10	5	5	7	6	11	7	6	12	4
CCACCGCAGCTCCTAG	alt_4079_upstream	21	49	15	22	44	18	54	16	57	11
GTACGTTATGTTTCAT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
CCATTGTGGCTTGAAT	alt_4079_upstream	63	55	112	62	86	82	61	81	57	63
CTAGAACTCAGATTGA	alt_4079_upstream	10	25	28	29	29	12	19	19	22	23
CGTCCCTTCGCCTCTT	alt_4079_upstream	11	9	17	7	16	20	12	12	17	7
AATGTTTGTCACGATC	alt_4079_upstream	27	33	23	16	22	16	25	19	21	17
ACGTTACAGCTTTGTC	alt_4079_upstream	28	25	32	26	18	29	30	24	17	20
ACGTCTGTTCAATGCA	alt_4079_upstream	62	80	73	63	78	71	76	53	77	51
CTTACACTTGGGTAGT	alt_4079_upstream	31	41	35	33	31	24	33	29	41	22
TAAGGGTGTAAAGGTG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCTAGCATTTGCT	alt_4079_upstream	33	27	40	26	31	33	33	27	30	24
CTATCAGCTAACTTCG	alt_4079_upstream	193	149	197	149	187	193	196	167	175	136
CCGTCGGACCCTTAGT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCTAACTCGCGCA	alt_4079_upstream	20	19	13	10	12	16	12	12	20	8
CGGAGTTCACCTGGGT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTGCTCTATATAA	alt_4079_upstream	48	55	55	48	57	51	52	56	65	47
CATTTAGCTACGCGGA	alt_4079_upstream	4	7	8	7	7	5	3	7	8	3
AGTTAGAGTCAACAGC	alt_4079_upstream	19	13	31	25	24	17	17	19	22	16
GTTTTGGCATCGGGGG	alt_4079_upstream	11	14	18	13	6	10	13	14	13	5
TGGTTTTCCCCTCGTA	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GGATTCTTGTGTACTG	alt_4079_upstream	25	33	33	23	30	26	20	22	30	14
TTCTCTATTCATTTTG	alt_4079_upstream	13	12	16	18	15	18	27	16	11	10
TTCTGGGTCTCGCCTC	alt_4079_upstream	199	211	215	194	204	205	199	160	235	167
CCGTTGTTGTTATTCT	alt_4079_upstream	93	80	93	96	86	84	90	83	119	75
CATTTTTTGGTCCGTT	alt_4079_upstream	32	35	29	40	21	34	25	39	30	32
ATCGCCAGGAGTACAG	alt_4079_upstream	44	48	49	52	40	38	31	25	26	38
GGTTGGGTGTTTGCGC	alt_4079_upstream	23	37	34	26	41	15	36	23	38	17
GAGAATCTCAACTTAT	alt_4079_upstream	92	98	118	130	95	106	100	91	87	79
TAGGGGAACTGCTTAA	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCCTGGTGTGATT	alt_4079_upstream	5	8	6	13	10	4	11	7	5	5
AGTTCCCTTGTATAGA	alt_4079_upstream	37	48	58	42	47	32	52	50	48	56
GACGGGCGTAGCTATT	alt_4079_upstream	48	40	53	58	42	51	49	51	49	51
GGTCGGAGCGATATCC	alt_4079_upstream	52	48	63	47	42	29	65	43	55	46
GTAACCGGTAATTATT	alt_4079_upstream	39	44	52	39	44	49	51	35	46	35
TATGCAATAGTACATC	alt_4079_upstream	6	5	11	7	1	6	15	5	15	7
GTATATGTCTTGTTTT	alt_4079_upstream	14	18	25	21	19	14	28	17	21	21
CAGCCCTATTAGCAAA	alt_4079_upstream	81	77	125	105	80	83	78	88	95	80
TCAGACCCGTTGCCAG	alt_4079_upstream	20	16	21	16	24	15	20	9	19	8
GCCCTGATCATCTCCT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATGTTCCGTCCG	alt_4079_upstream	59	61	74	62	85	55	73	57	57	51
CGCGCTCTCGCGCGTT	alt_4079_upstream	76	81	109	81	72	77	72	93	90	83
CAGAAGAGTGACCCTA	alt_4079_upstream	30	33	35	27	26	32	29	34	42	25
CGTACTGTCTAGGCAT	alt_4079_upstream	2	5	6	10	8	8	5	3	3	3
TTTTCGAGATTAATGC	alt_4079_upstream	253	206	301	247	178	242	238	254	232	231
TATGAGAGCTAGCGTG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
CATCATCATTTTCTGC	alt_4079_upstream	8	20	33	27	19	32	18	26	15	18
GACTCTTAGACATGGG	alt_4079_upstream	7	12	7	9	12	12	6	10	8	9
GCTTGCTAATGGTAAA	alt_4079_upstream	43	38	46	37	38	36	41	53	45	44
CCTCTAGGCTCGACAA	alt_4079_upstream	31	20	25	23	32	17	22	30	28	18
GTGATTCTTCATTAAT	alt_4079_upstream	29	20	40	25	29	18	24	21	28	27
AGTAACAGATTTGTAC	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCTAGAGTTGCAC	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGTTTTCAGCACC	alt_4079_upstream	5	6	7	4	5	9	7	6	5	3
TTGCCTGCCAGTTTTG	alt_4079_upstream	76	74	107	69	82	71	92	81	71	59
TTCTTCCAGACTTGGC	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GAGACACTGGTTCCTT	alt_4079_upstream	18	17	27	25	24	29	20	29	19	23
CCAAAATTACAACCAT	alt_4079_upstream	2	15	6	5	13	3	8	1	15	5
ACAAGCAGTTCTCCGT	alt_4079_upstream	65	77	108	62	80	90	96	81	90	70
CCTTGGGGTTCCGGAA	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTTTGAATATGG	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
TACCGTATGGTTTCGT	alt_4079_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAGAAAATTTAAC	alt_4079_upstream	19	22	26	23	12	25	22	11	31	24
TGACGGAAAGCACTGG	alt_4079_upstream	21	17	21	17	16	18	21	14	18	15
GCTATTAAATTCTTTT	alt_4079_upstream	25	23	31	27	16	21	27	26	22	30
ATGCGTTCAATTAAAC	alt_4079_upstream	57	59	79	59	61	54	60	70	62	71
TTGATTGGCCGTCTTT	alt_4079_upstream	26	16	24	22	26	19	27	20	21	21
AGAATCTATCTTCGAA	alt_4079_upstream	41	41	55	40	26	39	44	35	31	35
GATAGCTTAATTCACT	alt_4079_upstream	37	36	51	39	56	41	49	39	47	37
TGTGGAGAGCCCAGGT	alt_4079_upstream	72	54	84	64	54	59	45	62	50	65
ATCACATTGCTTCGAT	alt_4079_upstream	10	8	6	7	10	13	3	6	5	7
GACAATTGCACAGTGC	alt_4079_upstream	210	176	216	203	187	183	186	165	201	153
TTTAATGATCGTGGCC	alt_4079_upstream	60	56	71	44	62	71	65	40	57	48
TTTTAGGTTGTCCATA	alt_4079_upstream	63	72	82	61	56	46	53	65	72	49
AGGGTCCTCTTCGTCA	alt_4079_upstream	16	13	13	17	12	11	14	13	13	11
GCGTTTTCGTAGTGAC	alt_4079_upstream	93	103	107	109	123	93	83	98	85	95
GCGCTATGGCGTATAT	alt_4079_upstream	23	14	21	21	14	18	13	29	13	26
CACAGTCGCATTGAGG	alt_4079_upstream	191	228	233	197	205	170	248	180	213	180
ACCCATGCTCCGTTTC	alt_4079_upstream	105	85	105	104	83	111	106	112	92	88
GCCACCCCGACACCGG	alt_1246_upstream	59	97	81	79	100	81	102	52	133	54
AGGTATTATGTGGAAT	alt_1246_upstream	9	12	9	10	12	5	11	15	12	17
ATTTACACCAAGTTTA	alt_1246_upstream	74	90	75	60	106	66	104	75	119	40
AGTACGCTCGGTCTAC	alt_1246_upstream	2	1	2	0	0	0	1	2	1	1
AAGATGTCGGGTGACT	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
TGCAACAACGCGGCGC	alt_1246_upstream	28	23	22	17	25	26	23	16	26	18
GCTGAGTTATATTGCG	alt_1246_upstream	1	1	2	4	3	2	6	2	1	1
CAGATCTCACACACCT	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
TTGAATGCATCCATAT	alt_1246_upstream	133	201	150	140	190	116	169	114	208	131
GCATGTGAGATGGACC	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
AGGGAAAAGCCAATCT	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
ATACCGTCGGTGTTGT	alt_1246_upstream	20	32	27	28	32	26	14	11	25	18
CTGTGCACATCAACGT	alt_1246_upstream	17	26	16	16	24	11	20	15	29	11
CAGAGCCGATGGTGAT	ref_1246_upstream	43	102	66	36	87	49	96	32	104	39
CGCACTTTAACTATCA	alt_1246_upstream	84	85	84	74	99	64	100	46	92	63
TTGCTAACTCATGCAG	alt_1246_upstream	18	27	26	20	27	24	31	19	27	13
TCAATCGAGTATATCG	alt_1246_upstream	26	25	33	29	42	25	48	25	41	29
GTAAACTAGGCCCTAT	alt_1246_upstream	39	74	79	67	92	43	70	44	67	51
TATGTTTTCATTTCCT	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTAACAGAATCTT	ref_1246_upstream	17	13	18	16	20	14	22	18	14	12
GTTTGTTTCAGGCCTC	alt_1246_upstream	101	128	130	81	133	91	136	94	125	91
CATGGTAATGTCGACC	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
GTATGTTCATCGCTCG	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
AATTTCTTTAACGCGG	alt_1246_upstream	59	84	79	57	93	63	73	66	73	62
ATACTCACAGAGGCGA	alt_1246_upstream	26	32	22	19	29	23	45	15	38	22
CTCTCACGTATCGCGA	alt_1246_upstream	33	34	36	21	43	21	39	29	39	19
TAACCAATGCCCCCTC	ref_1246_upstream	6	20	9	3	11	6	17	7	11	6
TGTATCACGCTACCTA	alt_1246_upstream	43	65	57	41	39	32	66	34	49	33
GGTCAATTCCTTCCAC	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
GTAACCAGGCTTATCA	alt_1246_upstream	30	42	32	26	37	17	40	22	29	25
GTCTTAGCCTCTGACC	alt_1246_upstream	5	11	8	3	9	2	11	6	12	5
TGCATTGCCAACACCA	alt_1246_upstream	23	40	30	17	36	30	37	21	36	24
TTCCTCGGTTGAGGAA	alt_1246_upstream	12	9	12	7	13	4	10	5	8	16
ACGGCGACATAGAGAT	alt_1246_upstream	18	26	31	27	26	23	25	12	30	16
GAATATCTCGCCCGAG	alt_1246_upstream	12	9	15	14	9	8	10	6	13	8
TTGATAGCCGCATTTG	alt_1246_upstream	127	198	169	129	197	122	227	143	214	110
ATATCTGGAGATGTAA	alt_1246_upstream	10	6	5	11	13	12	4	10	7	6
GTTTGTAAGTTACGTA	alt_1246_upstream	18	41	32	26	27	19	34	11	39	16
CAATCAAAAGAGATCC	alt_1246_upstream	11	9	5	7	8	9	7	3	9	4
TTCGCTCTTTCGCAGT	alt_1246_upstream	16	7	16	7	16	13	10	6	9	11
AATCCGATCATGGATT	alt_1246_upstream	99	122	103	110	144	98	156	96	131	94
GAGGTTTTTCTATTGC	alt_1246_upstream	17	15	10	12	20	14	12	6	14	18
TTTCTCAGCTTTCGTA	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTGCTGCGTATAA	alt_1246_upstream	26	42	34	31	51	18	35	25	33	17
CGGTTTCTTCGCCTGC	alt_1246_upstream	7	1	4	6	7	3	13	4	4	3
GGCTCCGTAATTGGCC	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGGAATTTTAGGT	alt_1246_upstream	27	24	30	25	38	25	31	30	38	24
CAGCAAAACAGGCCCT	alt_1246_upstream	67	85	80	59	76	69	81	63	87	41
GTAAGTTGCAGTTAAC	alt_1246_upstream	8	20	24	15	21	16	22	14	19	12
TCCGACTGTAAGTGCT	alt_1246_upstream	26	56	42	37	36	28	46	31	57	36
TTTACAATGACTTTCG	alt_1246_upstream	68	115	97	99	78	68	137	67	122	73
TGTGCTCTGTACTTTG	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
GCCAATGTTCGTTTCA	alt_1246_upstream	10	36	15	11	36	10	29	14	39	12
CTCTGCAGGGATTAAA	alt_1246_upstream	11	7	9	8	19	4	7	11	12	6
TGATCTTGCGCGGCGC	ref_1246_upstream	23	28	35	29	32	20	37	33	33	28
TGGCCCCAAGACTGTT	ref_1246_upstream	137	151	167	126	181	124	183	114	159	125
TCCTGTTCTGACTCTC	alt_1246_upstream	18	45	21	14	41	17	63	13	53	10
TACTTTCCGTGCTACA	alt_1246_upstream	56	86	66	64	82	47	70	40	82	46
AACGAAATACGGGATA	alt_1246_upstream	22	36	34	32	35	30	37	27	47	33
TTCATTTGGTTTTATG	alt_1246_upstream	32	36	33	35	31	26	40	29	41	25
TCCTGTTCCCTGTGGT	alt_1246_upstream	16	22	19	21	20	8	15	10	13	11
CTCATCGTCCTGGTCG	alt_1246_upstream	13	19	25	18	24	18	28	23	22	12
TATATGATGTATGTGT	alt_1246_upstream	56	68	48	50	56	46	57	32	55	42
CGCCTTATGTTATAAA	alt_1246_upstream	3	1	0	0	6	5	1	1	2	3
GCGATTGGTCGTCCAA	alt_1246_upstream	45	71	55	32	74	48	69	40	65	39
CCCAGTGGTCACCGTT	alt_1246_upstream	98	145	122	119	134	102	137	104	142	80
TTAAATGTGAGTACCG	alt_1246_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTTTCCAGTTAA	alt_1246_upstream	44	60	54	33	46	40	56	35	47	31
AAGGGACAGAGTACCA	alt_1246_upstream	40	61	53	35	51	30	60	35	49	30
TTGAACGATATTATTA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
GAGGTATTCTCTGGCT	alt_4439_missing	6	15	10	13	15	5	19	6	17	9
GGTGCATACAGACGTA	alt_4439_missing	9	27	19	14	27	7	30	16	31	12
CAATTGTTCTATATTT	ref_4439_missing	3	10	7	9	23	6	10	6	10	6
GGCACTGTGTCTCCTA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CGGGTATCCTAGTGTG	alt_4439_missing	10	18	9	7	21	3	25	6	16	5
GGGCGCTTACCTCGCA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
GCGTTAATCTTTTGTC	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
ACCGTGTCTGTGCTGT	alt_4439_missing	0	2	0	2	1	0	1	1	1	0
TGTTTCGTATATCTTA	alt_4439_missing	14	18	11	9	16	9	22	4	27	4
TCAGCCCACCTTACTG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
GGTCTCTATTGCAGTT	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CACACGTTTCTAGCTG	alt_4439_missing	14	47	19	15	33	17	45	11	45	7
GAGCTGTTCCGCCCTC	alt_4439_missing	13	27	13	13	22	4	24	11	10	7
TATATATCCTAATCCA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CCCATATTTTTTATAA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TTGCAAGGGTTGCTCT	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
ACCACTCACGATACCG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
ATTCCGATTTGATATG	alt_4439_missing	17	38	22	23	31	22	31	13	58	25
CCACAGTACGTGATCT	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TCTTTCGATTTTGCTG	alt_4439_missing	6	15	15	9	10	9	13	7	4	8
TCGTAATGAGAGGTCG	alt_4439_missing	4	14	9	7	12	10	19	5	10	8
CCAATGTGACCGCAGG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CACTGAAAACGCTAGG	alt_4439_missing	10	26	10	6	22	7	24	6	30	9
GCGGTGTCGATTTGAA	alt_4439_missing	9	37	7	11	29	11	25	12	30	11
TATTGGACAGTCATTC	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
AGTCGCTACACAGTCC	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TAGAGCCGGTGCATGA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CGCATATGTACAGAAA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TGCTGGGGCTAGATGA	alt_4439_missing	11	16	12	6	21	15	27	11	26	12
TGGCATCTTGTTATAG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CTATTACGATCGGTTA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TTATCTAGAGCTCCCG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CACAGAATTCATTGTC	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CCCCTTATGGTCCCAA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
ATGGCAATTCCACCGT	alt_4439_missing	16	17	17	10	24	6	28	7	29	7
GCATCCTCGCTCTGGT	alt_4439_missing	16	29	11	5	15	15	32	22	27	13
TGCGGTAACTAGCGCA	alt_4439_missing	4	6	4	5	19	8	15	1	16	5
CAACGAGGTGTTGGCT	alt_4439_missing	2	4	7	2	5	5	2	9	11	3
TGGCTCGATGCCTTTC	alt_4439_missing	14	43	14	17	34	18	55	12	36	17
GTGTCTAGTTTTCGTG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
ATTTGAATCTAGCGTC	alt_4439_missing	18	69	33	30	65	33	67	23	64	31
ACGGCAGGATTCGTCT	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
AATGATCGTTTTCTGT	alt_4439_missing	30	38	25	27	38	14	45	21	50	24
GTCTATCAGCGGGTTC	alt_4439_missing	4	10	8	7	8	4	12	3	15	2
CATCCCAATATTTTTC	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
GTTATGGTATTATGGG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
GACGCTCCACCACTCG	alt_4439_missing	0	2	1	1	3	0	2	1	1	0
CTGTTAATCGCTATTG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
AAGAGTAGGATCTAAG	alt_4439_missing	2	5	3	3	7	7	6	1	12	0
ATTCGGAGCTTTTTAT	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TCCATCTTTCCCTTAG	alt_4439_missing	9	47	24	28	51	14	37	11	56	17
AGGCTTCATCGTATCA	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CCTCCTTTGTTTAATC	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TTGCCCCAGTCCGGTC	alt_4439_missing	2	2	1	1	2	4	2	5	2	3
GCTCTCCCTTCAGGGC	alt_4439_missing	7	21	6	4	30	6	24	1	34	10
ACCACCACGCTAGTTT	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
TTTCTACGGTGATTGC	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CTCACGTCAGAGACTT	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
AGACAGGAAAGGTACG	alt_4439_missing	0	0	0	0	0	0	0	0	0	0
CTGCTCCAGTAACTGT	alt_4439_missing	5	5	2	2	2	1	4	3	2	2
GTTCTGCCAGCTCCCA	ref_5816_new	6	6	12	11	11	7	23	4	19	4
AGTCTCTCCCGAGCGG	ref_5816_new	17	17	11	15	36	21	37	14	30	14
CATCTTTCACCGGTGT	ref_5816_new	11	58	20	19	49	15	44	12	48	20
ACTAAAAGTTGCCCGT	ref_5816_new	11	11	15	12	24	3	16	6	10	8
GTACGGCGTTAAATCC	ref_5816_new	106	185	136	117	191	137	176	115	204	99
ATTAAATTGTATCGGC	ref_5816_new	48	92	71	69	116	54	86	67	104	61
GAAAAGCCCTGCATGC	ref_5816_new	3	4	3	0	4	2	4	4	8	1
GTTATTTACCCCAGGT	ref_5816_new	9	15	6	7	9	4	7	3	13	7
AGGGTGTCTTGATCTG	ref_5816_new	7	16	8	8	18	11	14	8	6	8
CGTTTCTATCTCTGCG	ref_5816_new	61	128	86	66	107	61	141	65	139	49
TTTTACTGACAAGGGG	ref_5816_new	40	70	55	63	102	32	102	44	74	50
CACTCGCCGCTGTTAC	ref_5816_new	4	14	4	1	17	8	19	4	14	2
TAGGTGACAATGGGTG	ref_5816_new	3	14	7	3	7	5	7	1	7	5
CGGCGTTGGATTACCA	ref_5816_new	30	72	41	35	91	29	78	35	101	46
CAGTAGTCTCACGATA	ref_5816_new	15	16	24	18	27	14	21	14	27	22
GTATGGACTTGAACCC	ref_5816_new	0	0	0	0	0	0	0	0	0	0
TCATCTATTTACTTAT	ref_5816_new	168	246	168	159	277	129	306	135	254	120
CATAAGGTTTCCTTCG	ref_5816_new	0	0	0	0	0	0	0	0	0	0
CACCGGATTACGCGAA	ref_5816_new	13	42	19	11	61	12	48	16	52	7
CGTCTGGTTAACTTCA	ref_5816_new	0	0	0	0	0	0	0	0	0	0
ATTAGTGAGTCTTCCC	ref_5816_new	8	11	3	6	16	7	9	6	13	2
TTGTCGCTTACGGCCC	ref_5816_new	0	0	0	0	0	0	0	0	0	0
ATTAGTAGGGGCATAT	ref_5816_new	0	0	0	0	0	0	0	0	0	0
CCGCGTAGCAAGAGAT	ref_5816_new	40	68	33	45	67	46	75	34	98	29
AAGCCATAAGTACCTT	ref_5816_new	0	0	0	0	0	0	0	0	0	0
ACTGTATAGTCGTAGA	ref_5816_new	116	170	135	106	194	97	184	103	226	105
TTGGTAGGTCTGCCAT	ref_5816_new	17	25	14	14	25	8	35	7	33	21
GGCCATGTTGGCTTCC	ref_5816_new	6	15	14	8	12	8	12	5	14	10
CTTGACTTCCTCCAGC	ref_5816_new	0	3	2	5	2	1	7	5	4	1
AAATATCTGTAAGCAG	ref_5816_new	5	17	2	6	15	8	7	4	9	9
CGCTGTTACAGCCCTC	ref_5816_new	5	6	9	4	8	5	14	5	13	6
ACGGATCTGTAGATGG	ref_5816_new	25	21	20	26	14	14	35	12	25	9
CTTTTTCGCTCTCTTC	ref_5816_new	115	133	139	99	148	98	183	102	186	92
CTGTACTTGCAAAGTC	ref_5816_new	13	26	17	12	24	9	22	12	14	19
ACGGCATAGAGCAGAG	ref_5816_new	0	0	0	0	0	0	0	0	0	0
GGGGCCTATCTGCTTA	ref_5816_new	34	44	36	28	29	21	42	33	64	13
CAGTCCTATGGGCTAG	ref_5816_new	66	120	76	52	114	59	95	36	96	60
TTGCTAAGGCAAGTGG	ref_5816_new	7	7	6	2	2	3	7	1	5	2
CAAAACGCACCGCTCT	ref_5816_new	15	25	18	18	21	20	40	18	25	14
CTTTTATATGTCAGGG	ref_5816_new	13	13	13	18	20	12	14	15	20	9
GCATTTGTACATTACA	ref_5816_new	55	73	46	63	79	49	98	57	88	39
GCATCGCCCTGAAATC	ref_5816_new	35	96	58	45	95	52	105	40	97	30
CCGGCCCTAACATCCA	ref_5816_new	13	33	12	17	39	12	25	14	37	15
GCGGAGGTGGCGCCTA	ref_5816_new	34	48	41	43	52	38	58	40	57	36
CTAGGTCCAAGGATCG	ref_5816_new	23	41	18	16	42	13	42	18	54	16
TCTCTCTTCCGCAGCA	ref_5816_new	145	178	174	99	198	124	209	125	210	156
TTGAGGCGTTCCGACG	ref_5816_new	0	0	0	0	0	0	0	0	0	0
AAGTGGCGTAGAGACG	ref_5816_new	26	47	28	36	37	33	53	23	46	16
GGAAGCTCACGGTTGG	ref_5816_new	0	0	0	0	0	0	0	0	0	0
GGTTGCTGTAAGTTTC	ref_5816_new	75	114	78	83	112	91	126	55	122	73
TTGCTCTTTTATAGGG	ref_5816_new	30	80	54	40	66	48	84	36	80	39
TGGCTGATTCGTGCCA	ref_5816_new	20	31	19	22	32	28	52	27	46	18
TAACTGGTTATGTAAT	ref_5816_new	27	40	23	34	24	31	49	22	34	9
CCGAGTCCTTCTCAGC	ref_5816_new	3	5	2	2	5	1	4	2	12	3
CTGAGGTTTTCTCGCC	ref_5816_new	98	157	117	104	154	90	205	83	176	95
CACTACAACGAGCCCA	ref_5816_new	19	57	25	15	63	24	40	16	46	19
CCTCTCTCGGCCTATG	ref_5816_new	17	27	24	24	47	18	32	18	39	17
TGCACTGCAGGCGCTT	ref_5816_new	0	0	0	0	0	0	0	0	0	0
GTATCGGCCGCTTTGG	ref_5816_new	21	50	31	27	45	16	41	10	31	11
CCGGTTCCAAATGCGG	ref_5816_new	76	120	92	105	120	72	127	64	165	68
CGCGCGCCTACAGAAC	ref_5816_new	0	0	0	0	0	0	0	0	0	0
GGATGCCTAGCGTGTT	ref_5816_new	0	0	0	0	0	0	0	0	0	0
TGGGGTCACCTACCTT	ref_5816_new	0	0	0	0	0	0	0	0	0	0
CGCCCAGACTACAGTG	ref_5816_new	7	26	27	8	31	14	41	16	37	10
TTTTAACAAGAATTTG	ref_5816_new	15	26	23	19	29	15	35	13	30	13
TCGTCGTACCCGGGTT	ref_5816_new	10	21	13	8	16	7	17	8	29	11
TCGCTTATCTAGGGAG	ref_5816_new	0	8	6	2	1	3	3	4	4	0
AAGACGTTGTCGGTTC	ref_5816_new	0	0	0	0	0	0	0	0	0	0
TAACAGCTCATAAGGT	ref_5816_new	0	0	0	0	0	0	0	0	0	0
AGCACAATACTGGATC	ref_5816_new	0	0	0	0	0	0	0	0	0	0
TAGTTCCCCGCTCGAG	ref_5816_new	18	36	38	28	39	26	36	8	47	17
GCCTCGGGAAATTCTT	ref_5816_new	19	45	25	18	34	29	47	27	47	19
CTTGTGAAATATCAAT	ref_5816_new	33	45	38	43	52	30	63	34	71	39
GGGATTATCAACTTGT	ref_5816_new	89	184	116	78	154	97	164	92	179	97
TGCCCTAGTACGATAA	ref_5816_new	19	27	22	15	34	17	19	17	32	13
GTTGAGCGAACAGGCA	ref_5816_new	12	13	13	9	25	14	30	10	32	14
CGCCCTCATCCGCGTT	ref_5816_new	8	21	14	9	21	15	16	11	24	13
TTAGCGTTTGGCTTCT	ref_5816_new	8	24	15	12	18	12	17	10	19	9
TTAAATGCGTTTTTTT	ref_5816_new	71	101	80	77	174	82	113	78	123	48
CGCGTGAATCGATTAT	ref_5816_new	1	4	3	3	3	2	8	2	4	4
ACTTAAAGTCACTCGC	alt_2537_RC	18	24	46	27	40	30	33	28	39	25
CGTAACATCTGACTCG	alt_2537_RC	0	0	0	0	0	0	0	0	0	0
ACCCGGGACGTGGCAC	alt_2537_RC	14	10	24	12	8	21	17	15	12	18
ATTGTATGTGGCTTCT	alt_2537_RC	0	0	0	0	0	0	0	0	0	0
TTCGCGACAGTGGCAG	alt_2537_RC	43	48	60	51	43	50	41	51	38	42
CGTACAGTCTGTTTTC	alt_2537_RC	315	309	406	317	363	296	304	309	361	246
ATAATCAAGTGTGGTC	alt_2537_RC	39	20	47	38	34	35	44	40	21	32
CCAGAGAGTGTATCAG	alt_2537_RC	1	11	2	3	6	0	8	0	6	0
ACGACTTGTGGCATCT	alt_2537_RC	96	85	165	96	112	110	110	104	111	82
TAGCCAAAGCTTACGA	alt_2537_RC	25	38	44	40	39	21	47	42	52	36
CAAGCAATGTTCGATC	alt_2537_RC	3	2	3	2	5	2	3	4	3	1
ACTGCTGTTCATAATC	alt_2537_RC	15	22	27	16	17	20	16	14	24	11
TTGTTGGTCCTTGCTT	alt_2537_RC	17	23	27	18	16	23	9	18	11	16
TTAATTTAACTTACCA	alt_2537_RC	0	0	0	0	0	0	0	0	0	0
GTAATCGGCTATGGCA	alt_2537_RC	22	14	17	18	25	16	14	23	17	6
ACGTCTGAATGTGTCC	alt_2537_RC	124	125	136	124	148	108	158	101	139	116
ATTAACTATTCGATGC	alt_2537_RC	136	135	159	141	140	160	166	138	161	115
TAACAACTGTGTCGTT	alt_2537_RC	10	10	6	10	16	9	10	8	10	5
TAGTCTTTCCTCGACC	alt_2537_RC	5	19	11	13	14	6	7	8	15	11
AGCGCGAGGTACACGT	alt_2537_RC	0	0	0	0	0	0	0	0	0	0
TGGATGATAGACCCTA	alt_2537_RC	85	75	102	74	70	84	83	82	83	69
TGACTGTGGGTGTTGT	alt_2537_RC	39	39	41	25	40	29	30	29	40	18
ACCGCGTTTGAACCGC	alt_2537_RC	5	12	13	8	6	4	4	9	16	6
GGGTGGCATTATGAAC	alt_2537_RC	36	43	66	57	58	49	45	40	40	39
TATTTTCTTAAGCCCT	alt_2537_RC	35	25	33	30	14	30	18	33	21	21
TGTCCAAAGTTACATG	alt_2537_RC	28	24	24	13	17	25	19	18	23	19
GGGGCCAGCTGCCCGA	alt_2537_RC	30	24	36	33	19	23	23	25	31	32
GCGGACTGACTCCCGG	alt_2537_RC	106	62	139	115	76	98	96	116	85	104
ATCCATGGAACCCGGG	alt_2537_RC	35	18	47	22	25	31	23	22	35	26
GTCAATCACTAGCCTA	alt_2537_RC	159	163	185	142	157	137	185	115	160	141
AGCTGTCAATAAATAC	alt_2537_RC	179	187	240	174	150	187	185	166	178	162
CATAGTTGAGGGTAAG	alt_2537_RC	0	0	0	0	0	0	0	0	0	0
TGTACGATTAGGCTCA	alt_2537_RC	24	29	38	25	21	27	23	22	24	24
TTCCTATGGTTGTGCA	alt_2537_RC	39	41	39	50	43	41	41	40	42	33
AGGATCTTGGGTGTGG	alt_2537_RC	16	19	22	17	10	16	15	17	17	17
CAGGCGATGCAGCCTT	alt_2537_RC	75	77	82	69	66	63	61	58	76	60
TTATTGCCTGTCCATC	alt_2537_RC	68	54	63	58	59	52	64	38	60	50
GTACCAAACGGGGGAT	alt_2537_RC	0	0	0	0	0	0	0	0	0	0
ACCTTGTCAGCACAAA	alt_2537_RC	80	67	68	78	73	65	78	75	73	73
CGTCATGACAAGGCCA	alt_2537_RC	0	0	2	1	1	0	2	0	2	5
GGATACGCCCGTCCCA	alt_2537_RC	16	17	29	17	16	18	16	16	18	18
CGGTTCCATCAGTTTT	alt_2537_RC	43	85	45	51	85	51	76	50	93	40
TTGTTCTATGCGGGAC	alt_2537_RC	165	107	188	183	144	129	138	161	144	135
GCGTATGGTTTTCCAA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ACTTTGTTTAAGTGGC	ref_5699_new	81	130	79	85	129	89	142	90	115	100
TGCGTTTCCCCTTTCT	ref_5699_new	56	39	56	45	50	59	64	50	70	44
CGTCGCTTTTCCTGAT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TGGGTTGCGTAATCGT	ref_5699_new	40	52	50	40	51	52	47	42	74	41
TCGCATCAGCTCTGTC	ref_5699_new	41	55	62	29	54	57	55	30	59	42
CTACTGTCTACCGCTA	ref_5699_new	7	17	12	16	16	15	16	12	21	14
CTGTCAGTTTTTATTA	ref_5699_new	24	42	28	31	30	26	42	25	46	27
GCCCCGTCTACTTTCT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GTTTGTCTGCTGGTTC	ref_5699_new	9	8	6	5	4	4	11	3	4	3
GTTAAAGAGATAGGTT	ref_5699_new	28	38	30	36	33	28	36	29	32	23
ACAGTGAGGCCGCGAT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GTCATCGGTTACTCCC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
AACTTTGTTGGAGACC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TTTTCCCGACGGCGCG	ref_5699_new	1	4	0	2	2	1	2	0	2	2
GACGCGGAACCGCAGT	ref_5699_new	61	60	61	61	73	37	64	42	72	53
TGGCGATATCTGGCTT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CGTCAGGTAAGTTCGG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ATTTTATCCACAGCGG	ref_5699_new	57	53	49	54	55	34	68	39	56	33
TATAATGGCCGATTTA	ref_5699_new	6	9	6	7	13	9	10	4	7	5
TTTGTCTTGAAACTGG	ref_5699_new	19	19	32	24	26	24	14	12	25	15
GCATCGTAGTTACGAC	ref_5699_new	7	20	14	9	14	12	15	12	18	13
TGGGCTCAAACCTGTC	ref_5699_new	0	5	1	0	4	1	2	1	4	1
TGGATGTTAAAGGGAC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CGGTACGGGTTCGTTT	ref_5699_new	42	64	50	51	60	44	59	41	54	43
ACCTGAGAAAATATGT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CGTTATCCGATGTCCG	ref_5699_new	0	3	2	4	2	1	2	2	1	4
GAGGTTTATCCAATTT	ref_5699_new	31	26	42	32	24	25	23	23	37	17
GGATGTCATCAAATCT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GGAGGAGTCGTGCGAA	ref_5699_new	8	2	2	7	3	5	5	3	2	3
GGTATCAGTACTTCCC	ref_5699_new	9	20	13	9	13	10	16	11	11	8
CGTTGTAAGTCATTTT	ref_5699_new	23	19	27	27	37	22	28	19	36	18
GGCTAATGATTATTGA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TGGTCTATATCGGATT	ref_5699_new	31	38	23	26	53	29	52	25	38	25
GAATGTAAAGGCCTAG	ref_5699_new	96	98	134	101	117	93	103	76	123	82
TAGTCTTGCAATCTAC	ref_5699_new	24	23	13	23	20	14	37	19	30	15
GTCGCTTTTGGGTTGT	ref_5699_new	8	8	13	14	7	15	22	15	9	12
ATCTGTTTCATCGCGT	ref_5699_new	6	10	13	0	9	9	6	6	8	2
TTAGGCGTTCAACCCA	ref_5699_new	9	31	15	9	17	21	28	13	26	5
CCTAGGCTCTAAGAGG	ref_5699_new	13	30	21	12	22	29	34	16	30	10
AGATTCTTGCGAAGAT	ref_5699_new	15	20	22	17	27	14	24	17	19	24
CGTCTAACACTTATAA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ACGTGGTAAGTGACAG	ref_5699_new	70	77	88	55	83	69	78	59	86	72
ACCTTCGCGGGTTTTC	ref_5699_new	1	2	2	4	0	1	4	0	0	3
TCTCCGCCACCATGAT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CAGGATGCGGTACTGT	ref_5699_new	73	205	140	116	169	94	166	102	171	92
GTGAATCGGCGATACC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GTTGACGCTATCTATT	ref_5699_new	20	23	23	21	18	13	24	11	25	13
CGCCAAGGCGCGGGGC	ref_5699_new	22	29	20	16	20	16	28	18	19	22
AGTCGCTTAGGATTCT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CGTAAATCAATCTTTC	ref_5699_new	12	11	11	6	11	3	16	5	6	7
CGTGAGTCACTTTTTC	ref_5699_new	21	39	11	17	32	16	20	18	30	26
TTCGATTGGTTCTGTT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GCATTTTTAAGGTAAC	ref_5699_new	11	11	11	5	18	8	11	7	16	8
GTCATTTGGTCGTGCC	ref_5699_new	48	48	58	58	70	48	57	31	71	43
AGGTGTGAGCGCCCCT	ref_5699_new	34	36	46	31	29	32	45	32	51	26
GTTTATGCCCATGTGC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GTCCGCCTGTATCCCT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GGATCGGCGTACAAAA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TTAAGTGCGATAGTAA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ACGAATCATCGGAATG	ref_5699_new	0	2	0	0	0	0	0	1	0	0
CTGTTTGCGAGGTTTA	ref_5699_new	6	10	6	5	11	5	14	5	13	1
TCCCCGTAGACTTACG	ref_5699_new	7	26	16	14	24	10	34	13	27	7
GTTCTAACCTCCGTAG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CTAATCGATCGTGTAG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CTTTAATGTTTTGATA	ref_5699_new	22	27	43	22	26	26	26	18	34	30
GAAGTGGTCGCTTTGG	ref_5699_new	8	11	18	7	12	7	21	12	13	12
AGGTCTGCGGGTCACG	ref_5699_new	1	1	6	3	5	2	7	3	3	3
TCCCTCACATCGTCAC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GGGTTCAGCAGGTAAT	ref_5699_new	110	139	146	121	126	105	129	92	96	92
TTTCGATTTGTCGGAG	ref_5699_new	16	14	22	23	13	14	23	13	15	17
CACTGTCTTATTTCAT	ref_5699_new	83	54	85	64	84	79	60	60	73	60
GGAGTTTGTGGGCAAT	ref_5699_new	20	36	32	31	36	41	38	22	42	25
GAGTAAATTAGGGTAC	ref_5699_new	2	0	5	1	2	1	1	0	0	3
TTGAAGTGCATTAGTT	ref_5699_new	3	5	0	1	2	4	10	7	4	7
AAAAACCAGCCCTACG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ATGTCGCGCTCCTTAG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ATTTATCTCATTGTTT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TATGGTGTCAAATCCA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CACGATCACCATGGAC	ref_5699_new	13	28	31	26	23	22	19	12	22	14
CGTCAGATCTCTGTTG	ref_5699_new	79	88	119	76	96	70	108	73	95	79
CGTTCCCAGTCGTCCG	ref_5699_new	20	27	28	30	33	17	29	24	23	13
ATCTAGGACCCAGTGC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ACATCGGAACTTTCAA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GCGAATATTTTCGTAG	ref_5699_new	16	20	16	20	20	10	16	12	27	14
CTGCGTTATCTAGTAA	ref_5699_new	24	26	33	25	19	25	28	26	32	24
CATGCCATCTTCCCCA	ref_5699_new	31	63	29	18	76	20	92	20	69	20
GGTCGTTTCTTTAGTC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CAAATAGAATATTATG	ref_5699_new	12	15	16	16	20	14	20	12	9	9
TATTATACTATCTAGG	ref_5699_new	6	4	2	1	3	0	3	2	2	2
TTCAGAATCCTAAACT	ref_5699_new	14	15	22	15	20	6	18	15	18	15
GACCATGTAATTTGCG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GTGGAACTGACGGAGT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CATCGCTGCTGTTCTC	ref_5699_new	4	11	8	5	9	8	3	11	6	11
TGGATAGTGAGGCCCG	ref_5699_new	76	57	92	68	78	49	88	74	69	65
TTACCTAGACGTAGTG	ref_5699_new	0	16	2	0	16	2	20	3	16	3
GCCCCACGGTCGTCTA	ref_5699_new	20	18	12	14	25	11	18	11	19	9
CGAGTCCGCGGCGATT	ref_5699_new	21	12	20	19	20	13	20	13	20	17
ATGTCTTGCGACTCAA	ref_5699_new	28	26	28	25	29	27	33	23	30	16
CGGGGCCTGGTGGGCC	ref_5699_new	37	32	35	31	41	38	44	36	53	40
GTTATCTTTAAAGTTG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TGACCCGTTCTCATCA	ref_5699_new	10	3	8	12	9	3	11	8	4	7
ATTATCCTAGGAAATT	ref_5699_new	2	3	3	5	5	2	6	3	2	3
CCCCTTGTAACATGTC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GGGTGTCGTGATACAG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CTCCTTGATACTGCGC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TCTTTCTTTCTGTTAA	ref_5699_new	12	11	15	11	19	18	11	15	12	7
TGGCTGTATATTAGGA	ref_5699_new	12	17	14	20	13	13	9	12	18	6
TTCGCTCTCCTTTAGC	ref_5699_new	9	3	7	8	7	6	2	6	3	6
GCCATGTTCTTTCGGA	ref_5699_new	12	19	11	15	13	20	8	17	17	15
ATTTACTACTTTGCAA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
AACGAGGTCGTCCGGA	ref_5699_new	7	12	10	13	13	11	12	2	14	13
GGACGCTCTGCATAGC	ref_5699_new	16	20	12	10	22	13	18	16	17	10
AACTGCATCTTGTTTA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TAGGCAGAGTTATTTG	ref_5699_new	17	12	21	14	24	12	21	14	29	22
ACCTGAAAGTTCTTGT	ref_5699_new	12	8	10	6	10	0	7	5	8	3
GGAATGTTGACCAAAA	ref_5699_new	5	11	16	10	10	5	7	4	11	9
GTTGGATCACTTCTTC	ref_5699_new	11	8	19	6	12	8	15	5	12	6
CTCCGTATAAGCGACC	ref_5699_new	141	205	215	162	222	189	195	148	213	149
CCCAGCTAAAAGGTGT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TTCTGATTTGTCACCA	ref_5699_new	2	1	1	1	5	2	5	2	0	0
TCTAAATCTCTAGGTC	ref_5699_new	46	57	52	45	47	46	72	50	57	17
TCCACCGCATTTATCC	ref_5699_new	41	28	41	21	37	20	46	27	31	18
GTGAGAGTTCTTTATT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CCAATCAACACGCGCA	ref_5699_new	12	13	8	8	15	4	19	5	16	8
AATCCCGCCTTTAACG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CGTAGAGCCACAATAC	ref_5699_new	34	68	50	46	59	38	62	54	78	33
CCAGGTAGACTGATGC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CCATCCATATCAGGCG	ref_5699_new	70	96	115	68	99	83	110	56	108	64
GGATCCCCAGGACACG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TACAAATAAAACGGCG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CACTTGTTGAGACATC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GGACCTCCAGGGGGCG	ref_5699_new	57	75	57	49	77	61	74	51	67	66
CTCGCATTCGCCTCCT	ref_5699_new	10	12	17	2	7	8	12	5	19	6
ACCTCATGTCCGTCCG	ref_5699_new	43	44	48	43	56	40	63	51	58	38
CGAAAACGTATGATGG	ref_5699_new	71	47	67	48	39	52	40	57	53	45
GTGTTTTTTAGATACG	ref_5699_new	24	44	37	23	47	21	49	27	45	25
TGAGGTTTGCGCGTAC	ref_5699_new	69	59	83	47	42	56	55	58	64	46
CTGAATTAAATAGAGG	ref_5699_new	62	41	58	47	51	39	69	37	66	33
TTAAGTATGCCACTTT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GCTTCAGTCCTTACAC	ref_5699_new	6	14	13	8	14	12	18	7	9	7
CGAGACGTCAAAATCT	ref_5699_new	11	9	10	18	24	9	4	5	20	18
GGAGTGAAATTCTAGA	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CCTTCCCAACCTCTTT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ATCTAGGATTGTTGGC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
TTTTTTTGTTTCAAGT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CGACTCTCACTGCTGG	ref_5699_new	6	7	6	5	23	3	24	1	17	6
CTTCTTTGCAGGTTGT	ref_5699_new	25	47	54	32	48	40	61	36	41	27
CTCCGTATAAGCGCCC	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CAGTCTAGAACAGTTG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
CTCATACTCCCTAATG	ref_5699_new	0	0	0	0	0	0	0	0	0	0
ATTAAGTTTATCCAGT	ref_5699_new	0	0	0	0	0	0	0	0	0	0
GTTTGGGCTTGCCCAG	ref_5699_new	54	54	71	45	61	48	70	36	72	45
TATATTGTCTAATTTC	ref_5699_new	5	1	4	5	5	6	9	5	9	6
TACTCCCCTTTTTGAA	ref_3247_RC	43	137	55	41	136	44	143	34	127	35
GTGTAAATCCGACGCT	ref_3247_RC	17	3	17	16	2	8	2	17	2	15
ATACTTCATCGTTCCG	ref_3247_RC	93	20	123	122	33	106	23	69	20	70
ACCGGTATTTTTGGTC	ref_3247_RC	178	29	203	156	29	124	42	125	38	124
AGTATAGGCCCACCGC	ref_3247_RC	301	65	426	366	61	304	63	313	82	287
ATCCCTAATATAAAAA	ref_3247_RC	271	66	369	351	62	257	83	332	69	291
GGGGTAACTCCTTTAG	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
GCAACCGAGACTGCAC	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
CTGGGAGCCGCCAGTC	ref_3247_RC	76	19	113	69	16	53	9	50	15	55
TACGGAGTATCCTATA	ref_3247_RC	73	24	82	68	17	50	11	56	15	53
TTCCTCCTGTACATGG	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
GCCAGTACCTTGTTTT	ref_3247_RC	32	28	51	42	33	33	32	42	22	44
ACTTTCGGTCTTACCT	ref_3247_RC	14	33	28	25	30	16	23	13	31	17
GGCACGTATAGCCGAA	ref_3247_RC	11	1	10	13	1	13	1	6	3	10
TATACTTATAATTATG	ref_3247_RC	205	41	253	177	35	175	44	187	48	183
TGCGATCACCTCCTCA	ref_3247_RC	1132	266	1398	1347	259	1125	264	1146	255	1084
GGCCTCTCTCTCCATT	ref_3247_RC	300	65	380	316	74	260	75	300	74	290
AGGGGGAAATTGGGTA	ref_3247_RC	326	72	373	312	56	281	69	267	69	269
TTGGCGGTAATTGCTC	ref_3247_RC	114	34	125	155	27	142	44	121	41	104
GCACACTGAAGCTTTG	ref_3247_RC	361	71	436	372	84	353	88	343	81	298
GATCTGTTCATTCAAT	ref_3247_RC	142	44	140	172	52	157	56	140	56	118
TAGACTCGATACTGGA	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
TTAGTAAATTATCGGC	ref_3247_RC	106	20	114	103	24	106	16	102	34	93
GTTTCGACTGGAACTT	ref_3247_RC	1199	257	1601	1352	253	1171	284	1114	257	1175
CTCCCGGCCGTGTGAT	ref_3247_RC	51	23	76	57	18	57	18	51	37	40
AGAATTTCTTTACTGT	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
TATTGGCCCGGCCGTT	ref_3247_RC	449	111	599	492	107	418	113	476	100	371
ATATCAAGGTCGGTAC	ref_3247_RC	300	109	456	386	90	209	92	367	107	331
AGTAGACCTCAATCCC	ref_3247_RC	259	53	307	259	69	243	52	255	64	241
TTGTGGCAAGATCGAA	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
TCAGATCGGCTGAATT	ref_3247_RC	174	60	193	188	61	184	73	174	68	168
ATCCTACGATAAATAC	ref_3247_RC	87	24	122	96	26	80	30	83	23	64
GGGGACTTTAATAGTT	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
CAGACGTGCGTTACGA	ref_3247_RC	58	21	69	76	22	61	31	75	18	61
TATAGCGTGGCTTTTG	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
GATGATGCTATAGTGG	ref_3247_RC	316	79	365	368	85	335	83	258	82	282
GGGCTCTCATTCTGGT	ref_3247_RC	531	100	628	592	117	447	115	469	122	460
GAGCCCGGTGATCATA	ref_3247_RC	483	93	566	494	103	458	113	463	120	425
TGACCTAATACATAAA	ref_3247_RC	4	0	4	6	0	7	0	4	0	4
TAGGACCGATTCTAGG	ref_3247_RC	93	17	114	111	23	75	13	102	30	69
AGGACGGGGGGGCCCC	ref_3247_RC	635	145	831	715	138	697	123	660	129	583
CCCGTGTCCAGCTTGG	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
ATCCGCTTATCCTTCA	ref_3247_RC	97	15	121	116	23	86	35	86	16	76
CTAGTACAACGACCGA	ref_3247_RC	163	36	229	213	49	145	53	177	45	171
TTGTCAGAGAAGAGTC	ref_3247_RC	98	21	77	99	17	84	33	97	19	71
CACGACCCAACGGACC	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
CGCCGTGAATCCAGAA	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
TAGCTGCCGATGATCT	ref_3247_RC	212	40	291	271	43	205	49	245	59	209
TTCTCAGGTCGCTCAC	ref_3247_RC	93	15	87	58	6	59	12	58	11	60
GTTCGACGCAAGGTGA	ref_3247_RC	146	28	144	149	36	140	29	111	41	106
TAATGAATGGCATCCT	ref_3247_RC	0	0	0	0	0	0	0	0	0	0
CTAGAATGTGTCTGAG	ref_3247_RC	60	36	93	92	35	66	43	67	36	68
CTTCATATACGTCCTT	ref_3247_RC	1	0	8	1	1	1	1	1	1	0
CCGACTGTTGGTTCAT	ref_3247_RC	101	19	102	102	13	97	24	91	29	61
ATTTATTAATCTGGCC	alt_2272_RC	34	51	43	29	41	38	55	28	46	18
GCGACTATAGTATTCA	alt_2272_RC	15	25	19	14	33	17	27	12	37	23
CATGAACTAGCTTGTT	alt_2272_RC	20	63	35	41	50	47	46	26	49	26
ATCCGAGCCTCGCATT	alt_2272_RC	32	47	36	39	60	30	52	19	68	19
ACACAGGCAGTAAACT	alt_2272_RC	8	23	6	7	20	3	11	3	9	7
TGACACCGCGCTGCTC	alt_2272_RC	11	18	24	16	16	8	22	18	19	17
TAAGGCTTACTTATGC	alt_2272_RC	28	46	34	21	60	20	55	17	53	23
CTCGGTTTGTGTGTTT	alt_2272_RC	31	51	39	31	61	38	59	26	48	37
GTTGACCACTGGCTTA	alt_2272_RC	1	0	0	0	2	0	1	0	1	0
TATGTTGATTTGAGTT	alt_2272_RC	28	44	31	23	44	31	51	23	44	24
TCCCGTCTTCGCGTTT	alt_2272_RC	23	50	14	15	43	19	48	18	47	20
TACACTTCTCCTCCGT	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GTTCTTCGTGGCACTC	alt_2272_RC	3	46	9	4	55	7	50	4	37	7
ATAACCCACGCTCTCA	alt_2272_RC	0	3	0	2	0	0	0	1	1	1
TGTTGTTTCCCATCCA	alt_2272_RC	7	19	8	13	23	11	23	11	17	10
GACTATTCTGCCGAAT	alt_2272_RC	14	28	12	17	12	7	25	8	25	6
CGGGATATTCCATGAG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
CATCGCGATAGCTTTC	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GATATCCTGTATACAC	alt_2272_RC	7	19	10	6	25	8	18	16	24	13
TTTTTCGTTGCTCGGT	alt_2272_RC	12	32	27	16	32	21	24	9	37	13
CTTTTCGAGCGCGCGC	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
TTCCACGGATGCATTT	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GCTAGAAATTACGCTT	alt_2272_RC	4	3	3	3	5	2	11	5	8	5
AGGCTTTTGTCGGACG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
TGTATTTTCTGTGTGA	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
TCTCTAACTTATATTA	alt_2272_RC	56	115	59	55	105	48	99	55	106	63
CTTCGACGGAGAAAGG	alt_2272_RC	4	5	6	4	20	7	8	6	9	8
TTCGTCTGCTGTTCGA	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
AATGCTCATAAAGCAT	alt_2272_RC	29	50	41	40	55	27	54	17	68	39
TCGAATGCCCTGCCTA	alt_2272_RC	27	36	26	32	36	16	40	13	40	29
GTAGGGTCCTCGGCTC	alt_2272_RC	26	30	16	15	41	20	34	15	45	11
TCTCATTTGCTACAGC	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GTGCTAGACTAAGCGT	alt_2272_RC	1	3	2	0	1	0	5	1	3	0
TTCTTATGTACGCTGT	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
TCTGCCGCGCCTCGGG	alt_2272_RC	12	28	16	12	26	20	26	19	26	18
TTTCCCTCGCACCATT	alt_2272_RC	40	54	45	45	67	24	51	36	55	44
TGGCTTCTTAATCTTA	alt_2272_RC	107	146	140	125	153	112	184	90	186	96
ATTTCGCACGATTCAG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
TGATCACCGATTGGGC	alt_2272_RC	39	67	58	44	81	29	63	41	74	20
ATAGCGGTGATTTGTG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
CTTGCGCCAGGTTCGG	alt_2272_RC	13	32	15	12	42	22	26	10	39	17
TTACATCTGGGTTCGA	alt_2272_RC	2	3	6	4	8	6	8	4	16	3
ATATGGCCTTGGTTTG	alt_2272_RC	10	9	10	8	14	5	8	3	11	7
AGTATTGACGCATTGT	alt_2272_RC	5	15	10	9	11	4	17	14	17	4
GGTGTAGTAGCTAGTG	alt_2272_RC	22	56	26	25	48	32	53	28	63	25
TTATCACGATATTTTT	alt_2272_RC	12	12	6	7	6	11	17	15	20	11
ACTGTCGCGTTACACA	alt_2272_RC	0	2	0	3	3	3	2	0	5	0
TCCCGGTTGCCTCATG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GACCGCGTCGCAAGAT	alt_2272_RC	19	30	22	15	35	19	19	7	29	19
TCGCCGCGTACTGTGT	alt_2272_RC	14	29	20	8	26	19	20	26	21	11
ACCCTTCGTTTGTTAG	alt_2272_RC	13	49	23	20	37	29	52	28	34	17
GTCTTGTTCAGGTCAG	alt_2272_RC	16	27	29	15	43	9	40	12	34	14
TAGGACTGCAAATGTC	alt_2272_RC	11	33	14	11	23	17	25	10	32	19
ATTTCTGACCATTACA	alt_2272_RC	2	6	12	9	12	5	12	6	16	4
GAGTCGTTGGCATTAC	alt_2272_RC	10	17	7	4	10	7	7	5	13	8
AATATCTTCCTGCGCT	alt_2272_RC	96	129	93	92	178	81	183	100	182	68
AGACGGGCTCTTGCCT	alt_2272_RC	3	9	4	7	11	1	10	3	13	4
TTGTCAATTGCATGGC	alt_2272_RC	26	52	31	27	43	26	36	32	52	17
TGGTCCTTAGTAAACT	alt_2272_RC	26	54	43	36	64	33	63	27	69	24
CTAGTAGCACGGCTTT	alt_2272_RC	8	13	20	13	22	15	29	10	27	11
TCGTCACATTACATCA	alt_2272_RC	6	4	3	3	6	8	7	2	4	8
AGTATCGTTACCAGCT	alt_2272_RC	1	0	0	2	2	0	2	0	1	2
GGATCTGGCCCGGTAT	alt_2272_RC	1	12	4	6	11	2	4	3	3	3
ACTATATTTTCCTTTG	alt_2272_RC	29	36	31	24	29	34	32	25	30	17
GTGACTAATCTGTTTT	alt_2272_RC	20	20	19	27	29	19	26	16	33	27
TCCCTTTCCCTCACCA	alt_2272_RC	8	10	4	4	7	8	6	3	5	5
CTGGTTTCCGCTTTTC	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
CGGCTCTGATAGCGTT	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
TCGCCAGTGAGATGTT	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
CCTAGGATGTCATATG	alt_2272_RC	9	33	21	20	38	22	25	17	43	12
CACTCAGAGTCCACGG	alt_2272_RC	16	18	4	8	18	7	15	10	29	8
TTCGGATTGTACCGGG	alt_2272_RC	174	304	200	175	328	156	319	174	357	171
CCCAGTGTATTTGTAC	alt_2272_RC	2	2	0	0	6	3	4	1	2	0
TTTGCGCGTTTATACG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
CTACGCAGTAGGACGT	alt_2272_RC	30	57	29	34	49	19	48	26	62	27
ACGTGACAGTGGGGAC	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GTTAGGCATTCAGTTC	alt_2272_RC	7	5	3	10	7	1	6	6	11	6
TGCTTTACGTAATAAC	alt_2272_RC	2	3	1	2	7	3	2	1	4	1
GGCAGCTGTCGGGCCG	alt_2272_RC	97	132	94	88	132	75	160	80	147	69
TCAGAATTTATGGTAT	alt_2272_RC	1	5	5	20	7	6	12	7	12	6
AGGGCATTTAGTGCGA	alt_2272_RC	5	8	11	9	12	4	17	8	16	8
GGTGTATCCTGCTGAG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GTGAGAAGACGTTTTG	alt_2272_RC	19	32	32	17	27	15	34	12	39	21
CCTGCAATTTTGTTTT	alt_2272_RC	7	18	11	4	13	7	21	6	26	4
CGCGTTGTTCCTGTAG	alt_2272_RC	22	33	13	17	34	11	41	14	51	13
CTCACCGTTAACATTG	alt_2272_RC	13	25	23	24	33	17	38	11	29	5
GTTTAGTGAGCGTCCT	alt_2272_RC	23	59	34	27	51	29	51	30	68	23
CAAGTATTCTGTCTAT	alt_2272_RC	11	17	12	12	17	8	12	11	20	6
ACTTGCTTTTTGCATT	alt_2272_RC	5	13	14	10	17	16	14	2	11	6
GATAGAACGCCGCATT	alt_2272_RC	4	15	1	8	10	8	6	3	9	4
GGACGTATCAAGACGG	alt_2272_RC	34	51	37	35	53	37	76	40	58	32
AATTTTCCGGGCGGAA	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
GGTGACTTGCACGCAG	alt_2272_RC	0	0	0	0	0	0	0	0	0	0
TATGCCCTTTTTAAAC	ref_285_upstream	11	22	16	12	21	16	16	9	17	18
GCTCTAGGTCCCTAAT	ref_285_upstream	24	43	46	23	49	24	42	16	47	35
TTGACTCCTGACCACG	ref_285_upstream	1	1	2	1	3	0	2	0	0	0
CCCAAAGAGGTTCGTC	ref_285_upstream	19	25	12	13	20	15	20	18	25	14
GGGATCCTTTAGCTAG	ref_285_upstream	22	22	21	21	9	11	16	21	21	19
CCTGCAATTTTACTCT	ref_285_upstream	101	131	114	110	93	105	119	97	150	83
TCTACTACCCGTCGCA	ref_285_upstream	15	39	17	21	25	13	38	15	50	10
GACTCCTATTATTTTT	ref_285_upstream	19	9	14	16	15	11	6	18	13	12
TACCTTGAGAATCGTC	ref_285_upstream	2	2	6	5	6	2	4	2	5	5
TCCGCGATAGGGGGTT	ref_285_upstream	8	14	1	1	7	0	11	7	6	3
ACATGCTGCATGGAAT	ref_285_upstream	57	72	76	65	71	84	89	66	78	72
TTTCAGGCCCCCTTGC	ref_285_upstream	1	0	2	0	2	3	0	0	1	0
ATGCTTGGGTCCGCTC	ref_285_upstream	19	17	12	15	14	12	13	10	28	10
GTTCGCGACATCTTGG	ref_285_upstream	30	47	48	31	44	40	41	58	60	29
CAATTTGTTGGCGTAG	ref_285_upstream	159	206	201	146	187	143	202	138	188	148
TGTTCGCGTTCTTCGG	ref_285_upstream	0	1	1	0	1	1	0	2	1	1
CTGATTGGGACTCGCT	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAGTGTGTTCCTG	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTGTCTGAAATTA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGAATACGGTTGC	ref_285_upstream	35	43	41	31	26	38	44	33	59	38
AATTCCTGGTTCGGCT	ref_285_upstream	13	31	20	39	22	20	22	18	32	17
TCGGCGCTCAAGCCAC	ref_285_upstream	65	76	72	85	70	75	86	52	78	48
CGACTTAGCGCCAAGA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGTTGCGTTTATC	ref_285_upstream	70	100	80	69	87	44	94	63	90	45
CTGGGCCCTGTAGCGT	ref_285_upstream	59	59	65	33	67	46	63	32	65	45
TTATTGGACAGCTTAG	ref_285_upstream	31	32	30	30	36	23	43	22	25	30
GATTCGTACATGCTTG	ref_285_upstream	3	2	4	2	5	3	8	1	3	4
CGGGAGTGCCCACGGT	ref_285_upstream	4	6	7	10	5	7	5	4	9	5
TTCCCATAAGCTACTA	ref_285_upstream	4	9	10	13	4	2	8	4	3	7
TATATCGATCCGTATC	ref_285_upstream	8	9	11	9	6	6	5	2	8	10
CACGGCTCATGCCTCA	ref_285_upstream	77	88	101	82	137	92	116	65	102	76
TGCGGTGCCTCTCCAT	ref_285_upstream	23	18	16	17	22	13	22	11	17	17
AGGGGAATTGTGGAGG	ref_285_upstream	18	9	19	18	17	14	20	13	10	10
GCACCTCGAAATAATG	ref_285_upstream	4	7	3	4	6	1	2	6	6	7
CTCCCGCTAATCCGAA	ref_285_upstream	7	33	9	12	33	4	53	10	30	5
CGGGCTAGTAAGTGGA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
AGATCGTTAACAACGA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TCCTGCAAAACCGCTA	ref_285_upstream	17	40	24	27	42	26	31	18	27	21
TTGAGCTATTGTGTAG	ref_285_upstream	15	30	22	11	19	16	40	26	29	9
AGTTATTGTTTACCTT	ref_285_upstream	46	55	42	50	57	37	53	49	53	39
TAGACTTTGCCAGCTG	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
GTTTAGTCAGTTTTTC	ref_285_upstream	37	37	37	23	34	21	46	27	61	16
AGCATATAGTCCGAAG	ref_285_upstream	1	2	1	3	2	1	2	2	4	0
AATGGTTCCATGGTGT	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
CCGCACCTACGCCCCG	ref_285_upstream	19	22	14	12	25	11	16	10	22	12
TGCGTTTTTCACGCAG	ref_285_upstream	2	5	1	5	5	1	1	2	10	3
GCTCGGGATTTACTCC	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCGGCGAGCGACT	ref_285_upstream	36	47	46	34	40	29	45	35	32	34
CGTTGCACATGCTCTG	ref_285_upstream	90	91	111	90	109	79	99	76	116	61
AACGTCGCATCAGGGT	ref_285_upstream	114	152	157	118	210	106	201	134	237	117
CGCAGTTGGGTTAAAT	ref_285_upstream	118	122	137	102	144	114	177	90	150	108
TTACTTGGGGCATGCT	ref_285_upstream	27	58	60	34	72	31	64	56	64	37
CTATCGTCTTGCAAAG	ref_285_upstream	213	255	215	190	265	178	291	196	264	167
TTCATCACTGATTAAC	ref_285_upstream	47	63	57	40	56	42	69	41	58	58
GTCAAATACGAAATTG	ref_285_upstream	40	70	45	40	60	31	76	34	79	26
AGAAGGAGTCGTGTTA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TGCATTCATATGCTAC	ref_285_upstream	2	1	0	2	6	1	2	1	1	6
GTCTTTTTCTTCCATG	ref_285_upstream	64	52	63	39	69	43	57	52	71	45
CGTTATGAGCGTTCGT	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
GGTACAAACACCGTTC	ref_285_upstream	31	42	37	31	35	27	40	25	48	24
CTAACTAACGCTCTCG	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGCCAACCCCACG	ref_285_upstream	38	59	66	50	81	54	87	55	84	34
ACGGACCGGCTGCTTA	ref_285_upstream	19	23	23	20	22	16	21	21	21	22
TACTAAATACACTGCC	ref_285_upstream	13	32	10	10	52	8	31	8	35	12
GTCGGAAGCGTGAGGA	ref_285_upstream	27	35	37	24	25	29	35	25	42	35
TTTAGTCTAAAAAGAG	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
AATGTGGAAGTTGTAG	ref_285_upstream	43	59	70	48	65	42	69	57	72	44
TATTCATGGGGTGACT	ref_285_upstream	12	23	15	16	22	14	33	17	30	22
TCGTAAGGATTCCGGC	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
ATAACGTGCTCGGGTC	ref_285_upstream	30	17	30	24	21	28	20	23	30	28
GACGGTCAGCGCATTT	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TTGAATTGGGCGGACG	ref_285_upstream	23	16	17	19	28	11	22	24	31	15
TGCCCCATGTTGTGAG	ref_285_upstream	47	46	42	42	52	35	60	38	45	32
CGGGGACATTTATGTC	ref_285_upstream	13	37	35	23	41	15	34	25	41	22
AACTGGTTTGCTAACT	ref_285_upstream	36	35	42	27	24	27	34	27	52	25
TATGTAATCCTCGTGC	ref_285_upstream	12	12	8	9	12	9	12	3	26	8
TGTGGTCTTTGGACTC	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TTCATGATCCCGCTGC	ref_285_upstream	35	28	29	39	35	20	43	23	28	20
GTGCTCATCAGCTTAT	ref_285_upstream	79	129	116	105	123	124	150	83	156	90
TCTCATTTGTTACGAG	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
CCTTACACCCGTGAGC	ref_285_upstream	48	52	45	43	55	34	57	37	74	53
GTAATTTAGCCTATTC	ref_285_upstream	8	22	11	8	17	11	17	7	18	11
TAACTGGAGCACGCTT	ref_285_upstream	32	43	43	68	61	38	46	34	60	30
TACAATGGCTCTGCAG	ref_285_upstream	6	5	8	6	8	1	6	3	9	4
TTTCGACCTCTCGGGC	ref_285_upstream	56	70	62	67	71	64	86	58	84	58
TTAAGCCACCGATGCT	ref_285_upstream	9	15	19	13	15	20	19	5	27	9
GCTGGTCAGGTTCGGG	ref_285_upstream	16	25	10	26	19	13	33	18	21	25
ATAATACGTCGTCACA	ref_285_upstream	26	44	35	21	29	31	27	27	44	32
CTACGGTCCTCAGTAT	ref_285_upstream	3	5	0	2	5	2	3	7	9	3
CTCCAGCCAGATATCG	ref_285_upstream	8	30	7	14	28	10	30	11	22	14
GCTTGCTGATGTCCCT	ref_285_upstream	2	0	6	5	4	0	6	5	8	6
TCTGGCCGTTTATTTG	ref_285_upstream	21	26	21	22	20	20	25	9	31	13
CGTGTCCCTCGCAGGT	ref_285_upstream	11	19	15	9	15	11	23	13	19	10
TTTTTCGGACCTCTGG	ref_285_upstream	13	25	29	31	27	29	37	27	33	23
TGTTGAGTTGGTGATA	ref_285_upstream	7	18	16	8	8	12	16	4	10	1
TCAATTGGAGTGTCCA	ref_285_upstream	21	41	34	35	36	26	39	24	50	17
TTTCGCCGGTGTCTCT	ref_285_upstream	44	68	23	39	50	31	52	31	43	40
AAACCCACTTACGAGA	ref_285_upstream	47	54	81	57	84	41	72	58	65	39
TTTGTATAGGCGCGTC	ref_285_upstream	6	6	6	9	19	4	10	4	8	4
AAGTTTCCACGTTATG	ref_285_upstream	32	28	44	30	44	19	36	22	30	21
GCCCTCTCATATGAAT	ref_285_upstream	24	30	19	16	28	17	29	22	24	8
TCGAACACAAAGACCT	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTTCGAGGCCAGG	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCTCTAACCTCCG	ref_285_upstream	1	19	5	3	5	3	6	6	6	9
ACAATGGCGTTTTTCT	ref_285_upstream	10	12	18	7	11	9	9	10	13	12
AGCGACTCTTGATGAT	ref_285_upstream	11	16	15	8	18	11	17	7	18	9
TTACTTCTAGGTGACC	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCTCGGTCCGATT	ref_285_upstream	23	38	25	22	41	24	43	26	43	14
CCTGTCGCATTTGTGA	ref_285_upstream	33	51	23	29	52	23	60	25	51	31
CTAACGCATACCGTTA	ref_285_upstream	7	18	15	5	10	9	16	7	15	9
ATCTTACGATGCACAA	ref_285_upstream	36	33	33	21	32	36	46	18	29	19
CAAAACAGTTAACTTC	ref_285_upstream	227	333	260	240	296	244	319	197	346	214
TTTCTACAGCACGAGC	ref_285_upstream	32	42	44	34	54	41	34	31	45	23
GGTACGTGCGGTGCCG	ref_285_upstream	22	26	32	21	14	21	22	13	40	15
AACTATTGTCAGGCCG	ref_285_upstream	33	39	30	16	21	23	29	19	29	16
CCGTCTTGAAGGGTCA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
GACGCGGTCTGTTTGA	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
ACATGCGCTATGTTGT	ref_285_upstream	24	17	16	16	23	10	21	12	15	17
GGTTCTCTGTCAGCTT	ref_285_upstream	29	47	43	36	52	31	52	33	40	26
ACTTTCCCGCATTTCC	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
ATGAAGTCGCACACAC	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
ATTGAGAATGTATGTA	ref_285_upstream	46	73	50	44	67	32	60	43	78	33
AGTGTACGTCGCTAAC	ref_285_upstream	5	12	2	2	3	6	14	5	17	2
GTCTCCCTTGCATAAG	ref_285_upstream	0	0	0	0	0	0	0	0	0	0
GGACCTTTCCCGTAGC	ref_5639_new	122	37	117	77	42	78	44	90	37	93
AGTAGGTCATCGGCCT	ref_5639_new	24	11	25	19	8	19	12	27	10	20
CACAAGTTTGTTTGTC	ref_5639_new	118	48	140	105	36	85	50	112	49	97
AAAGACTCTCTCAGGT	ref_5639_new	72	25	91	78	32	66	30	81	48	78
CGGCGCGTTTCCTAGG	ref_5639_new	0	0	0	0	0	0	0	0	0	0
ATGGGGTCATCTGTTG	ref_5639_new	49	24	72	54	16	46	29	45	23	37
CCCCCTTATTTATTTA	ref_5639_new	0	0	0	0	0	0	0	0	0	0
AATAAGCGCAATATGT	ref_5639_new	328	159	407	336	169	337	166	308	186	256
GGTATCTCTCACGCAT	ref_5639_new	94	30	92	97	29	91	32	88	36	80
GTGGCTTATTACGTGG	ref_5639_new	303	117	370	294	134	274	131	332	128	277
TGACTTTGAGGCGCGT	ref_5639_new	0	0	0	0	0	0	0	0	0	0
GCGGAGCTCCTTCACC	ref_5639_new	275	104	327	322	110	255	111	288	122	226
CTTTGAAGACCATCTC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
AATTCGATTGCCAAGG	ref_5639_new	0	0	0	0	0	0	0	0	0	0
CGTCCGTTGTCGAACC	ref_5639_new	27	16	44	27	14	24	17	33	17	21
GTTGAGACTTCATATT	ref_5639_new	14	3	12	19	8	12	4	12	3	9
AACCAATTGACAGTCG	ref_5639_new	0	0	0	0	0	0	0	0	0	0
ATACACTTACTTTAGC	ref_5639_new	83	53	80	81	56	48	52	59	45	59
TGGTTTACTTATTAAT	ref_5639_new	0	0	0	0	0	0	0	0	0	0
GGCCTGATTGATAAAG	ref_5639_new	87	33	97	107	42	77	41	68	43	71
GCATTATCGCCGCGTC	ref_5639_new	9	5	11	14	6	17	2	9	3	6
ATTTTAAGGCCCCGCC	ref_5639_new	6	3	5	1	0	5	3	7	5	9
TAACAACTTCCTTTGG	ref_5639_new	0	0	0	0	0	0	0	0	0	0
CGGCGTTAGATTGATC	ref_5639_new	86	28	84	84	27	76	25	69	41	57
GATTCAGGCGCCGGCG	ref_5639_new	79	21	96	77	11	78	21	77	14	64
AAAGTTGTGAGCATGG	ref_5639_new	0	0	0	0	0	0	0	0	0	0
TTTTCATTGAGCACAC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
TACGGTTTGGACCATT	ref_5639_new	0	0	0	0	0	0	0	0	0	0
AACAGCATATGATTCG	ref_5639_new	212	129	241	220	108	188	149	199	138	189
TGAGCTTGTTTAGATT	ref_5639_new	38	9	49	51	16	42	8	34	20	31
CCATCGATGTGGCTTT	ref_5639_new	14	25	18	14	32	16	28	18	29	8
GACTCTTCGACACGTG	ref_5639_new	110	29	91	96	41	61	38	77	46	91
TTTACCTCGGTATACA	ref_5639_new	30	8	29	23	13	39	14	38	18	22
TACCAATAAGTCTCGC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
GAGTTTCATCTGACAG	ref_5639_new	29	11	30	27	12	23	12	25	10	19
CGTAACAATACCTGTT	ref_5639_new	105	39	143	138	47	102	60	118	52	92
ATCTTCCATGGGTCTC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
AGCTCCGTTTATCCTG	ref_5639_new	40	22	55	42	22	45	31	27	30	39
GGCTTGGCCCGTTCAT	ref_5639_new	22	11	52	48	6	36	21	28	19	29
CTGGGCGCTCAGTCTT	ref_5639_new	27	7	31	35	7	33	10	35	6	20
TGGTTACATAAGAACT	ref_5639_new	149	44	175	125	60	121	55	100	53	118
CGCCTCGTATGCACTG	ref_5639_new	185	89	197	165	64	145	93	176	74	162
AACCGAGTTCTGAGAC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
TCAAATTTGCTACATG	ref_5639_new	243	91	359	291	135	291	99	245	120	254
GTTTCTTCGGTTTCGG	ref_5639_new	34	15	45	44	21	44	14	47	20	30
TACCATTGTTTCATAC	ref_5639_new	572	190	606	588	207	416	203	525	205	422
TGTAAAAGCACAACCG	ref_5639_new	226	112	289	277	115	219	129	244	104	215
CCTTTGCCTCGTATGC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
TTGATTCGTCATAGAT	ref_5639_new	0	0	0	0	0	0	0	0	0	0
CTGCTTCTCGTAGTTA	ref_5639_new	140	64	181	166	76	151	65	137	93	140
CTTTCCCAACGTAACT	ref_5639_new	38	14	66	42	18	31	13	47	17	35
TTCACCGTTGTTTGCC	ref_5639_new	128	56	134	158	70	129	57	140	71	114
GGCACATCTTCGGCTA	ref_5639_new	32	8	37	37	11	25	22	29	10	20
GGTTCGGGACCTGGAT	ref_5639_new	117	46	143	118	44	106	58	102	49	91
TGTTTGTTAGTTTGCT	ref_5639_new	101	59	124	122	51	98	57	103	48	113
GTTGTGTATGCAGCTA	ref_5639_new	0	0	0	0	0	0	0	0	0	0
GTACGTCAGTAGTTGC	ref_5639_new	43	17	68	50	23	31	13	31	21	40
TCTTGCACTCCATGGC	ref_5639_new	4	9	14	11	11	6	20	4	18	3
GCCACCCGGTTAGTCG	ref_5639_new	133	72	155	156	78	129	88	123	78	136
TTCTTTTCAGGGCCGT	ref_5639_new	0	0	0	0	0	0	0	0	0	0
AGCAGTCGTCTAAGGA	ref_5639_new	45	19	65	51	23	57	10	48	16	44
CCGGCACGTGTTCCCA	ref_5639_new	0	10	5	6	9	4	13	1	4	2
TTTGGACATTGTAAAC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
GACTAGGCATCGGGGT	ref_5639_new	11	1	10	14	3	7	0	7	3	4
TGGCACTTTGGACTTG	ref_5639_new	11	9	20	17	13	24	2	20	7	15
CGTTTCCCTTTCCAAG	ref_5639_new	7	3	14	6	8	10	7	7	3	7
CCTACTCCTATTACAC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
CCGACATAGAGTTCCT	ref_5639_new	108	61	119	135	58	81	54	108	72	87
CGATGAAGTTTGGCGT	ref_5639_new	98	31	110	126	46	100	38	117	35	83
GTTCATTTAGGCACAT	ref_5639_new	53	18	62	55	27	29	18	45	21	36
CGTGTCACACAGGTTC	ref_5639_new	7	1	5	4	1	3	3	6	2	1
GCAGAGAGCGGCGGAG	ref_5639_new	39	17	55	56	24	42	20	63	20	43
CTGGAATCATCCGTCC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
CGCGGTAACTTCATTC	ref_5639_new	30	13	50	39	13	40	10	36	13	33
AGTAGGACGACTTGGT	ref_5639_new	106	43	155	122	46	136	49	117	47	99
AGTTGTGCCCTTATAC	ref_5639_new	14	7	12	12	10	10	8	11	10	17
CTCTATGACCGCATCT	ref_5639_new	138	60	147	121	53	113	56	132	54	105
GGCAGCAAGCGCAACA	ref_5639_new	16	7	22	19	12	13	6	20	11	31
CGTAGGACATTGCTTC	ref_5639_new	57	41	85	89	31	55	23	84	33	65
TGGCTGCTAACCCTCT	ref_5639_new	61	18	83	58	22	70	30	73	28	50
AAACTGTCGGAGTCGC	ref_5639_new	0	0	0	0	0	0	0	0	0	0
TTCTAACAGGTGAAAT	ref_5639_new	0	0	0	0	0	0	0	0	0	0
TGGCAATATTTCAGCA	ref_5639_new	177	55	172	163	54	152	46	161	71	147
AGGAGATGCGTTGGAG	ref_5639_new	74	33	91	97	34	82	33	94	38	58
CATGAAAAGTCTCGTT	ref_5639_new	46	15	53	59	21	47	25	48	23	57
CTCTTCTCGGAACTAC	ref_5639_new	298	148	406	330	149	301	150	303	159	266
TGATTAGGCCCGCCGC	ref_5639_new	130	44	148	138	62	139	60	104	45	132
CTTATGTTTTTTGTGT	ref_5639_new	152	44	136	169	50	136	46	140	48	103
CTCATCTCGAGTTCTA	ref_5639_new	114	47	106	104	40	101	55	105	33	82
CCAGGTCCTATGAAGC	ref_5639_new	54	49	55	67	56	40	53	49	38	51
TCTCGGACTTTGAGTA	ref_5639_new	73	35	97	98	33	75	51	81	38	92
ACAATCGACATAATTG	ref_5639_new	19	8	12	9	0	13	3	5	6	5
CGACGTCAGAAATTCG	ref_5639_new	173	70	190	192	47	169	79	153	66	140
CGTAGTCAATTGGTCT	ref_657_negative	67	39	43	38	50	44	35	47	42	64
GCGCACTTGGCTGGAT	ref_657_negative	0	0	0	0	0	0	0	0	0	0
TTCACTATATACGGTT	ref_657_negative	9	8	13	8	4	14	8	7	5	6
GCTGCAGCCCCAAGGT	alt_657_negative	36	23	43	33	24	38	30	28	18	33
AAGGCGGTATAATATA	ref_657_negative	19	10	19	10	13	15	10	17	15	10
TTTTTTAATGCTGCGA	ref_657_negative	29	26	28	32	19	20	28	35	28	20
GGGATCCAATTAACGC	ref_657_negative	0	0	0	0	0	0	0	0	0	0
CCCCATGTGCTTCACT	ref_657_negative	0	0	0	0	0	0	0	0	0	0
CTCTCGTAATATGAGT	ref_657_negative	47	34	40	26	50	40	43	35	51	34
ACACGAATGTCTTCTG	ref_657_negative	0	0	0	0	0	0	0	0	0	0
CTTATTGATTTTTCAC	ref_657_negative	38	18	45	35	31	24	24	33	36	48
GCATATATCAGTGACA	ref_657_negative	0	0	0	0	0	0	0	0	0	0
CGTCGGTAGTTTTTGC	ref_657_negative	0	0	0	0	0	0	0	0	0	0
ATTTACTATCTTTTTC	ref_657_negative	12	14	22	11	15	22	7	13	18	14
GTGGTTACCGCTTCTT	ref_657_negative	37	28	33	36	32	26	30	25	27	36
GGATACACAGGAAGAG	ref_657_negative	144	100	165	118	76	110	93	117	83	122
TTACTCGATATCAATT	ref_657_negative	13	6	9	13	5	10	5	7	11	12
TTTTCGTCATCAACCT	ref_657_negative	0	0	0	0	0	0	0	0	0	0
GGAGTTTAATGCGATT	ref_657_negative	85	46	84	83	63	86	68	84	77	80
AGGGTCACTCCAGGTA	ref_657_negative	0	0	0	0	0	0	0	0	0	0
TTCGACATTATGGCTA	ref_657_negative	24	33	61	42	32	43	31	35	40	28
GATGTAGCCTGAGTCG	ref_657_negative	64	34	58	46	41	43	34	49	35	44
AAGACCCCTTACATAT	ref_657_negative	415	215	438	341	214	352	242	340	246	358
TCCTTTGGTGGACTAT	ref_657_negative	0	0	0	0	0	0	0	0	0	0
AACTTGTCTCGATCCT	ref_657_negative	46	35	58	52	32	30	27	53	27	43
CAGTCTATGCGACAGC	ref_657_negative	20	23	34	12	17	16	15	19	17	17
TGGGGCTGAGCTTTCA	ref_657_negative	0	0	0	0	0	0	0	0	0	0
ACTAGAGGGTACATAG	ref_657_negative	9	12	24	10	11	15	10	9	14	17
AGTTATATCCAAGTGT	ref_657_negative	37	21	31	16	28	25	26	22	21	21
TTAGCAATTCTGGAGT	ref_657_negative	11	3	5	5	3	13	9	11	8	6
CTTCGCTGTTCTTTTC	ref_657_negative	29	43	38	42	34	33	42	35	60	32
TACGGTACCTTACAGG	ref_657_negative	0	0	0	0	0	0	0	0	0	0
ATGCGTCTACTTGGGT	alt_5403_fdr	131	61	128	143	57	108	72	122	71	93
ATTGAATGGGTTGTTC	alt_5403_fdr	162	83	194	139	67	150	76	146	74	155
TATACGCACCCTGTCG	alt_5403_fdr	49	19	64	38	25	45	30	51	17	62
GGAATTTTAATTCTTC	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
CCACACTTACTATTTT	alt_5403_fdr	180	68	216	202	76	173	92	161	88	138
AAAACACTATTGTGAC	alt_5403_fdr	184	79	223	213	82	207	89	188	80	157
TGGCGGATGCTGCGTC	alt_5403_fdr	16	13	19	30	6	17	12	11	3	17
AGACTATGCTAGCGTA	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
CAGACTTCAAGTGACC	alt_5403_fdr	193	78	243	200	89	234	81	165	78	164
AAACGAGTGCGACAAC	alt_5403_fdr	49	7	36	46	12	30	15	33	10	29
TCACTTGCGCGGAAAT	alt_5403_fdr	6	6	15	11	4	5	1	4	2	5
TACCGTAATGACTCCG	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
TTACAAGACGGATTCC	alt_5403_fdr	49	9	57	28	19	48	14	39	21	31
CCCCTATCCGGGAATA	alt_5403_fdr	177	68	211	182	65	171	80	145	75	159
TCGTAGGCGTTGGTTG	alt_5403_fdr	49	15	60	51	25	47	23	52	27	32
CTGATTCGTGACTGAT	alt_5403_fdr	163	79	249	163	95	203	76	194	104	163
GACTTGCCGGGGAGTA	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCTGGAGTAATGC	alt_5403_fdr	218	68	272	228	79	217	88	196	70	183
AAATTTAGGACAGGTG	alt_5403_fdr	369	116	430	380	156	372	147	356	161	372
AGTGATTTGGTTCAGG	alt_5403_fdr	98	24	114	96	45	82	39	96	51	73
GTTGCTTGACCGGCAT	alt_5403_fdr	65	16	47	41	13	42	29	47	22	33
GTCTATTATTGAGCAT	alt_5403_fdr	25	9	25	22	5	19	5	31	10	14
TGGACGTGTCGACTAA	alt_5403_fdr	171	68	234	182	51	153	70	184	57	131
CCTTTTTCGTATAGAG	alt_5403_fdr	189	68	193	153	85	151	68	150	82	125
CCTGTTCCGATGTCTC	alt_5403_fdr	9	4	20	14	2	19	3	15	8	10
CCATGAGTTCCTCTCC	alt_5403_fdr	67	36	82	73	38	58	23	64	26	64
CTCGTCACGTCGTTGT	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTACCTATAGCA	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCCTTTAGTGTAT	alt_5403_fdr	45	16	53	39	20	36	13	28	26	30
GAGGGTAACATCGCGT	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGCCGGCTAAAGT	alt_5403_fdr	100	39	184	154	30	114	66	115	53	118
TTATATTTGACCCACT	alt_5403_fdr	107	38	116	105	44	111	32	115	52	93
TTTGGCCGACTACCGA	alt_5403_fdr	12	4	24	29	10	14	11	11	16	11
TTGGATCCGGCTGCCC	alt_5403_fdr	81	26	71	90	22	77	35	60	33	73
CTACGAGAAAAAACAG	alt_5403_fdr	39	13	62	43	10	43	17	36	15	45
ATGCACCGCTGTAGTG	alt_5403_fdr	33	10	37	35	5	26	11	28	20	30
GTCTTGTGACGCCGTC	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
ACTTTGCACTTCTATC	alt_5403_fdr	39	10	42	37	10	35	15	32	15	34
AGACATGGGCACTTAA	alt_5403_fdr	50	26	59	61	26	64	30	62	20	43
TCTATCTTAAGGTTGT	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
TGATTCACATCATGAT	alt_5403_fdr	349	135	447	348	130	356	138	320	151	340
CAAAAGGTGAATCTGA	alt_5403_fdr	380	134	426	371	153	349	135	364	171	309
CCCCTCGAGCTATACA	alt_5403_fdr	262	59	332	233	60	235	97	248	70	214
GATTAGGTGAATGGTT	alt_5403_fdr	78	23	69	76	23	71	29	59	21	67
TAACCCTGGCTCTCGT	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
ACACCCCGATTTACGG	alt_5403_fdr	60	19	77	61	27	56	33	60	29	56
TGCCTGGGCCCTGGAT	alt_5403_fdr	20	14	22	30	13	22	16	26	15	22
GCCGTAGGACCCGTCG	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTTGTTCGTTAAC	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAACACAAAGGGG	alt_5403_fdr	20	7	17	16	11	22	6	10	5	13
GTTATGGATGAAGGCA	alt_5403_fdr	41	7	50	51	6	38	11	57	16	34
CTGAATACTCCTGATC	alt_5403_fdr	122	33	137	127	41	82	50	115	36	99
CCCTCAATGTTAAATC	alt_5403_fdr	44	17	40	43	15	42	16	41	13	37
TGTTGCTCGCGCACTA	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
CATCGTTGTTTCCTAT	alt_5403_fdr	0	0	0	0	0	0	0	0	0	0
ATAAGATATATCTTCG	alt_5403_fdr	44	13	57	54	13	45	20	25	10	31
AACGTTAAGTAATGTT	alt_5403_fdr	227	79	282	252	68	228	79	211	101	189
TTTTGTTATTATGCTA	ref_1072_missing	3	7	8	2	10	1	12	4	14	3
CAACAATTCGTTGCGG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TTCCTTTGTTTGGACT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GGGTGTTGGTTTGGAT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TATTTAATGTTATGCA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ACCTGTGGTCTTCTCG	ref_1072_missing	4	6	0	5	22	2	7	2	9	3
TTCGAGTGATCGAACA	ref_1072_missing	8	7	6	4	13	6	15	6	7	4
GCTCACTTAAACCATG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CCTGATACTGTTGAAC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CAGAGCGTGACACCGC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GACGACCCTTTAGAAC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TTGGATTATCTTGGTA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TCGGTACATTTTCGTC	ref_1072_missing	4	11	7	3	9	6	6	6	5	4
CCGTCTCTGAAACACT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CTTGAAAGAGCGGTTG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TATTCCCCGCTTGCGC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CTCAGATCCACTAACG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
AGAACGCGAGATTGGT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GTCCGTTGTGTAATCC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GAAGGAACGTTACAGG	ref_1072_missing	12	19	14	12	23	6	16	5	19	8
TCAACCGTGCCTCAGG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GATTATTTTGACCTAT	ref_1072_missing	34	48	28	30	44	34	57	26	51	28
AGTCAGCCGCCAAGCG	ref_1072_missing	5	22	10	12	12	4	12	5	17	10
CCCCCGTATATTGTCA	ref_1072_missing	2	1	1	1	1	0	1	1	6	0
TAAGTTCTGACTGATG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GCGAATATTGGTCTTT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ACGGTTAAGGCGGCTT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GAGCTCCCCATGAGGT	ref_1072_missing	5	6	5	5	14	5	13	4	12	2
CCAATTAATATCGTGA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TACTGTTCAGCGGTGC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
AGTTATCCCTGTCGAA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
AACAGGTTCAAACCTG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TGTCTCGTCCCCATGT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GATTTCCAGACACCCA	ref_1072_missing	4	6	8	6	10	8	14	9	9	6
ATAGTAGGTGGTTAAA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
AGTTAACTAATCGGCA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ATCCTAGGTTCGCGAG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TCTTCTGCATTCCGAT	ref_1072_missing	3	5	4	5	5	2	7	0	1	0
TATCTTAATACTATCT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CCCCCAATATGACGCC	ref_1072_missing	1	0	0	1	4	2	1	0	3	0
CGCTAGGTCTCACAAT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GCCTCGCTAGATTCAG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TAGTGCGTATAGGGGG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTGAGGCCCGAT	ref_1072_missing	4	6	4	7	9	3	13	4	9	5
CCGGTACGGCAAGGCA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TGTCGTTTCTACCAGA	ref_1072_missing	1	0	0	3	0	1	2	0	0	0
TCGTCTCACTCTCCAA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TTCTTGTCAACTGGCT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GCCACTTATTTGTAAT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GGTATGTACAACCTAG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GCTTCTTGTACAGAAC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GTGTATGGAGGGGCTT	ref_1072_missing	4	3	0	1	2	4	1	4	6	4
ATTAAGAATTTCTCAT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GGCCAGCATGGAATCC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CTCTTCCAGGTTTGAG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TCATACGAGGTTAGTT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ACCCAAGATGGTGTGC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TCTATGGTTTACCGAT	ref_1072_missing	12	14	11	10	19	12	8	7	12	11
CTGTAGACATTAAAGG	ref_1072_missing	3	3	1	2	18	1	7	6	2	3
CAAGATAAGCGTCCCG	ref_1072_missing	8	5	4	6	10	3	12	6	2	2
TTGCCAGTTTGTAGGG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GTTTCGCGTGAATTCA	ref_1072_missing	10	3	5	7	8	5	4	4	9	5
ATCGTTTGGTCACAAG	ref_1072_missing	31	46	41	36	59	37	34	31	56	33
CGTCCCTAGTACCCTG	ref_1072_missing	11	15	14	9	21	8	24	5	17	10
ATTGTCTTGGCCAATA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ACGGCTACTTCGTTTC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GTGGTAAGAACCCGGC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TGGGCACTCTTTTCTA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGGAGCAACTTG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ACAGAATAGGCAGGCT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CCCCTGTGCGAAGGCT	ref_1072_missing	0	2	2	0	0	0	0	1	0	0
TATTTTTATTTTGGGT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GCGCGACTAGCCCAAA	ref_1072_missing	19	17	17	14	15	14	16	12	12	10
TTAGTGTCTTCAACAA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CCGCTAGTGCTTCTTG	ref_1072_missing	3	6	8	6	9	6	5	4	9	6
TACGTCGGGTGCTTGG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
AGGGTTGCTGGCTTTG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TACGTTCTTAGTAACC	ref_1072_missing	6	9	7	5	12	14	10	7	10	8
AAGTTATTGGCAAACA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
AGGGAGTCTAAACGCA	ref_1072_missing	1	3	2	2	4	4	1	2	6	3
CCGGCCGTTACGTCGC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TTCATTAACCGATCGG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ATCTAGTCTACCAGCC	ref_1072_missing	7	9	5	8	7	4	11	5	6	12
CCTTTCGGGTTCTCGA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CTCCAGATTCTTGGGC	ref_1072_missing	3	15	12	7	8	3	11	4	10	4
TAGGTCTCCCAAGTAG	ref_1072_missing	5	4	1	3	3	2	3	3	8	1
GAAGAAACTGGGGAGC	ref_1072_missing	9	10	6	4	10	3	9	5	16	4
TGTCCTGATTGCCACG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GTCGGGTTTCTGTTGA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ATTATCTACGGGCCGA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GCCTATTCTGCGGGTC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
ATCTTTGCTACCGTTC	ref_1072_missing	3	10	5	5	3	5	8	3	7	7
TATGACTCATTTCCAG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TCCTTCCGTAGACACT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TCAGGTTCGTGTGATA	ref_1072_missing	10	13	10	8	16	16	29	15	27	4
CTTTGGCCTGGGCTAT	ref_1072_missing	3	2	2	1	5	5	1	1	0	1
GATCGGACACACGACC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CCTCCAGATGGCGACT	ref_1072_missing	4	3	4	2	5	4	3	2	9	3
TAACTTACTAAGTCAA	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GGCAAAGCTTTGCCAG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TTATGGAACTCGGCCG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CTTCCCAGGCTCTGAC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GGTCCCTTTTCATAAT	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
TCGCGGGGGCGCCAGG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CTTCGCTAACGGTTGC	ref_1072_missing	19	18	19	17	26	16	30	16	31	16
TGCCGCATGCTGCAAC	ref_1072_missing	29	33	39	34	41	34	51	34	47	16
TTGAATGTATCGGCTG	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
GGAATGTTTTGCACGC	ref_1072_missing	0	0	0	0	0	0	0	0	0	0
CAGGGGTATATGCGTC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCAGTCGAACGTC	alt_4994_fdr	19	14	30	20	23	27	23	18	15	24
ATTGTCGTTGCGCTGT	alt_4994_fdr	56	30	77	73	32	69	25	50	34	69
TTCGTATACGGCGAGT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GCGATACATGGTTCGT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTAGATTTTTTTC	alt_4994_fdr	26	14	22	33	9	27	21	44	22	23
TATTTGACTTTGAGCG	alt_4994_fdr	24	15	31	38	10	31	16	32	7	26
ATTACTCGCCAGATTA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GCACATGGGACTAGCT	alt_4994_fdr	226	91	292	216	87	219	95	205	89	176
ACTGTAGTGAATTCAA	alt_4994_fdr	25	18	39	40	11	17	19	31	17	21
AGCTTAGGTCATCAGT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTCTCCTACAAA	alt_4994_fdr	57	29	95	89	47	77	42	63	30	75
CCTAGGCGCATATTCT	alt_4994_fdr	118	65	162	122	43	125	60	115	37	90
CTGTATTGGGTCCGGC	alt_4994_fdr	134	47	145	112	60	99	46	112	69	100
GAGTTTCCGGCATCCC	alt_4994_fdr	46	26	55	66	21	52	30	50	18	43
ATCTATTTACGGAATA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GCAACTTTCCTGTAAC	alt_4994_fdr	257	97	250	258	103	185	91	224	101	187
TCTCGCATCTGGGTCG	alt_4994_fdr	33	16	30	15	11	16	13	29	15	16
CAGCTAGCGCCTGGAT	alt_4994_fdr	107	31	107	98	45	70	47	80	47	77
TATTTTACTCCTCTAA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TACGTAATGCTTCTTT	alt_4994_fdr	137	49	180	151	31	154	41	116	66	102
AAAGCTGGCAGGTCCC	alt_4994_fdr	6	5	6	10	1	10	4	6	1	8
TCTATGGTTCAGCGTT	alt_4994_fdr	15	15	17	24	7	15	11	16	7	20
ACTCAGTGGGCTGATA	alt_4994_fdr	22	6	22	21	8	31	13	27	9	24
GTCACATGCCGTGTTC	alt_4994_fdr	141	67	161	121	61	135	54	116	68	115
AATGTAGCTGAATTTG	alt_4994_fdr	70	33	92	64	25	51	31	52	24	60
GATAATCAGGGGCTTT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
AAAAGGGGATTGCCAC	alt_4994_fdr	55	23	68	67	26	62	43	63	32	54
ACTGCGCGTACTTGTA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GATTTACTCGACCTCA	alt_4994_fdr	32	21	39	44	16	30	28	35	16	44
ATCTCTTGATCCATCC	alt_4994_fdr	121	49	161	128	61	99	45	124	61	124
ATCCTATCATATGTCA	alt_4994_fdr	24	11	17	21	13	23	14	22	13	24
ATATCCTGGAGTCCGG	alt_4994_fdr	19	15	20	27	8	25	13	16	3	14
GTAACCCGCTTGCTCG	alt_4994_fdr	73	40	88	75	24	87	33	78	36	59
AAAGCGCCATTTGGCG	alt_4994_fdr	76	35	95	98	26	73	45	92	29	64
GCTCCCGTCGTTGTTG	alt_4994_fdr	2	12	6	13	15	6	22	9	27	8
CGTAACAACAATATCG	alt_4994_fdr	192	76	246	234	86	194	95	210	97	165
CCCGGGCCGGCTAGCT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGCTCTCCCTAT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTTGTCCATCGG	alt_4994_fdr	14	10	26	19	12	19	12	10	2	13
TATGTTTCATTCGCTG	alt_4994_fdr	97	57	134	127	32	104	57	71	53	83
TTGCACTCGCTTGGGC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCGCAAGCCCACA	alt_4994_fdr	962	446	1169	1101	452	942	469	920	512	846
GTTTTAACTGAAGTTA	alt_4994_fdr	195	73	253	201	78	192	94	196	88	179
CGAATAGCTGTAATCA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CCACGATACGTCGGAG	alt_4994_fdr	123	60	176	139	78	118	85	118	104	90
TCAGCACTCGCTTACC	alt_4994_fdr	47	31	73	60	47	36	44	48	47	48
CTTTACGGCTGGGGTG	alt_4994_fdr	258	98	268	284	111	209	105	223	115	204
GGCTCGGCGCGGCTAA	alt_4994_fdr	189	74	261	234	73	212	94	191	95	189
ATGGTGTCCGGACTTG	alt_4994_fdr	38	13	57	57	13	44	19	44	23	42
TGGTTTTGTGTTAACG	alt_4994_fdr	183	85	228	206	79	195	97	186	90	156
CGCGAAGTGGTTAATT	alt_4994_fdr	82	34	93	69	22	62	39	73	46	58
TGTTAGCTGAACCACC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGAGTAACCTGTA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAGCCACGATAGA	alt_4994_fdr	77	37	116	91	46	85	42	79	48	69
GGTGTGCCCAGGGCTG	alt_4994_fdr	237	98	270	225	85	216	96	210	109	184
GCTGTCGCTATTATAG	alt_4994_fdr	45	14	35	29	18	30	25	34	17	31
CTACGCTTATACGATT	alt_4994_fdr	37	18	63	44	15	36	19	30	12	40
TGAGTTGAAGAGTGGG	alt_4994_fdr	12	5	14	12	12	12	4	20	6	9
AATTTACCCCTTCGAC	alt_4994_fdr	20	12	28	21	11	17	13	23	12	19
GTGCTTAGGAAGTAAA	alt_4994_fdr	16	8	31	23	5	11	20	25	11	16
TCTCTGGCTGTGATTC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCCCAGCTTGCTG	alt_4994_fdr	142	55	175	163	49	133	70	126	45	114
CGGGTCAGCTTCTTAG	alt_4994_fdr	43	19	45	61	16	38	22	39	21	32
GGCTTTCTAGTGTCCC	alt_4994_fdr	790	354	991	841	357	722	441	805	388	781
TTTTATACTTAGGGGT	alt_4994_fdr	56	36	78	68	19	61	49	53	41	46
CTATTTCCAACATTGA	alt_4994_fdr	26	17	60	38	16	38	19	48	25	53
CACTTGTAGCTACTAC	alt_4994_fdr	72	57	89	88	51	86	53	83	61	74
GCGGTTCTACGTGGGG	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGGAGATTTGTGA	alt_4994_fdr	516	246	603	529	215	505	275	489	285	423
ATCTTCAAGGGCCAAC	alt_4994_fdr	194	93	275	193	90	205	111	184	113	172
CTGGCTCTCATACGGA	alt_4994_fdr	113	42	140	134	63	106	58	113	54	84
GCCCGGGTCTAACTGC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTCGAGGACCATA	alt_4994_fdr	106	64	141	107	78	105	58	122	88	103
CGAGTATTGGGCTCGA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGCCGGGTAAGTG	alt_4994_fdr	31	33	58	51	28	39	18	65	24	45
AACACTGCCTGGCTAC	alt_4994_fdr	36	23	33	29	24	20	43	29	26	35
TGCTACACATGATGAC	alt_4994_fdr	106	51	145	136	50	113	56	117	61	105
TTATAGTACTGAGGTG	alt_4994_fdr	50	15	65	57	22	47	18	54	19	40
TCTCAGCATCGTAGGG	alt_4994_fdr	900	517	1183	1015	466	878	475	870	459	789
GGTTATCTAGCAATGG	alt_4994_fdr	80	34	83	80	37	71	45	70	39	66
GGTTGTCTATGATAAT	alt_4994_fdr	57	28	86	66	35	62	34	70	41	67
TCTGCGCTAGTGGGGC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GACTCTGTCCTTTTGT	alt_4994_fdr	306	147	393	319	160	324	144	311	155	277
ATCTTGCACATGTCTC	alt_4994_fdr	1072	456	1343	1131	406	1001	476	1033	484	995
ATGATGGAAGCCTGGC	alt_4994_fdr	75	22	90	46	42	71	32	57	31	67
AAACACAAGAAGTAAA	alt_4994_fdr	82	34	124	80	21	93	26	69	40	70
TGCTCTGCCTTTGCTA	alt_4994_fdr	59	24	58	47	18	53	22	56	33	63
TGATTTTGGCGTTAAC	alt_4994_fdr	62	42	94	62	22	45	29	64	35	59
AAGAACGCCCGACATG	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CATGGAAATGTTAGCC	alt_4994_fdr	25	19	47	43	19	30	11	39	17	32
AAACTTATATGGGTGT	alt_4994_fdr	48	26	56	50	25	48	23	63	45	52
AGTTGTCTCCACTTTA	alt_4994_fdr	83	30	85	91	29	75	44	78	23	74
CATCAATGGCCCAATC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATCGCGTTTAGG	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
AATCCACGGCTTTACG	alt_4994_fdr	85	38	99	70	41	78	38	84	37	78
TGGGAATGGCCTGCGT	alt_4994_fdr	45	14	71	72	18	49	22	56	22	58
TCCTTTCCCCTTTTGG	alt_4994_fdr	41	29	46	42	20	29	22	43	28	39
CCTCATGTCGAGTACG	alt_4994_fdr	38	38	65	73	40	51	44	42	54	38
CTCCTGCCTGTCTTTG	alt_4994_fdr	13	17	22	15	15	8	11	17	10	14
ATTGCCGATTCGTGGT	alt_4994_fdr	468	215	537	477	203	430	235	378	223	406
TTCCTGGTAGCATTTT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGGGCATCCCATT	alt_4994_fdr	196	88	227	201	101	183	79	194	83	180
TGGCGGTGCTGCATCT	alt_4994_fdr	96	37	109	103	45	110	51	104	59	86
TCCTTTGATCCGCGAG	alt_4994_fdr	92	47	118	110	45	92	43	99	52	83
TGCAATGTGGCTTAGG	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
ACTGCGAGCTGCCCGC	alt_4994_fdr	126	55	170	122	50	112	49	116	63	109
GTACATGACCGATTCT	alt_4994_fdr	42	13	61	37	18	35	15	37	26	29
TTATGGTTTATAGCAG	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TCATCTCACGCTTTAA	alt_4994_fdr	38	21	85	64	22	47	16	60	30	55
TAGCCCGACTAAATCC	alt_4994_fdr	210	91	228	230	94	187	93	190	90	163
TCCAAATGTTCGTGGT	alt_4994_fdr	43	14	24	33	23	35	21	21	12	21
CAGTGTAAAGGTACTT	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
ACATGAGAGCTCCAAT	alt_4994_fdr	247	130	314	305	133	246	113	247	156	236
TGACTGTCTCGCCAGT	alt_4994_fdr	96	46	125	107	44	93	50	79	41	90
GATCTTAGGCTCGCTA	alt_4994_fdr	80	30	71	68	24	47	31	54	29	53
GTTGTGTCTCAGCGCT	alt_4994_fdr	35	26	60	49	20	50	23	28	30	41
AATTTCAGTATCATGC	alt_4994_fdr	120	52	129	93	59	98	59	109	61	98
ATGTTTACCTATGCAG	alt_4994_fdr	76	27	97	102	33	68	34	72	25	74
TTGCCTTCATTAGCTA	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGACGCCTGGTCC	alt_4994_fdr	68	42	63	90	31	54	43	76	36	68
AGCTGAAGACCTTCGG	alt_4994_fdr	69	37	71	73	34	49	34	74	27	52
CGTCCTTCATTCTGTA	alt_4994_fdr	14	8	26	16	8	15	8	13	9	16
GTCCTTTTGTCCAGGC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCACCATGTCCCC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TACGTAATCCTATATG	alt_4994_fdr	36	18	37	54	13	33	6	39	15	29
AAGTAATACTTTTTTT	alt_4994_fdr	263	88	317	318	94	236	101	226	90	233
TCGCGTCGGCCAAAAC	alt_4994_fdr	128	60	148	147	50	121	71	128	70	123
GATTGCATAGACGACC	alt_4994_fdr	99	57	124	128	48	108	43	95	37	84
ACGACTGGTAGGTCGC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TACTATATTGATGGAG	alt_4994_fdr	20	16	14	19	9	10	8	20	4	16
TGTGGTCAACAGTTAC	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
CGTTGATTTTTAAGTG	alt_4994_fdr	0	0	0	0	0	0	0	0	0	0
TCTTACCATGCGTTCT	alt_4994_fdr	38	23	48	38	10	42	23	34	19	33
ATCGAAATATATATAC	alt_4994_fdr	34	27	58	57	19	44	30	39	15	41
TCTCCAGATATTGGAT	alt_4994_fdr	43	30	52	50	29	34	25	47	42	49
CCGCATTGTCCAGGTA	alt_4994_fdr	141	91	164	167	74	111	87	136	97	114
GAAGGGATGTTGTTCT	alt_4994_fdr	172	91	194	176	87	156	88	147	89	158
GCTATCGGATGCTTCC	ref_1284_fdr	153	187	204	150	190	155	174	111	201	138
TTTACTCTCGTTCTGC	ref_1284_fdr	14	15	11	16	9	5	9	9	12	7
CCTTCCTATCCTGTCT	ref_1284_fdr	26	39	31	19	36	16	41	17	44	26
AAGATCTCGCTGACAG	ref_1284_fdr	103	148	140	138	141	115	182	103	117	94
CTCCGGTTGTCGTCAT	ref_1284_fdr	3	5	5	9	9	2	10	5	10	1
AGGCCTTTGCATATAA	ref_1284_fdr	22	22	28	17	21	21	18	27	32	28
GGATTAGTCACGTGAG	ref_1284_fdr	285	357	362	304	361	344	360	317	404	313
TAGTAGTATCTCCTCC	ref_1284_fdr	2	10	5	8	10	8	9	7	10	5
ATTCGATCTCACTCCC	ref_1284_fdr	2	14	3	4	13	4	13	2	12	4
CTCTCTCGTAAGGTCG	ref_1284_fdr	68	68	67	59	84	63	96	65	96	68
ATGGCCACGACCTCCC	alt_1284_fdr	19	20	34	23	21	21	19	20	29	17
GATTCCCCATTATTTC	ref_1284_fdr	1	3	2	2	5	2	3	0	4	2
TATTGATCCAGCGCGC	ref_1284_fdr	89	102	87	84	101	80	93	82	113	66
ATTTCGTCGAAATGGC	ref_1284_fdr	1	0	3	0	0	0	1	2	2	1
GGTTCCCATAGCGTCT	ref_1284_fdr	40	33	34	34	40	26	36	35	31	26
TCAAAATGGTAGTCCT	ref_1284_fdr	90	91	124	106	89	82	107	82	105	93
TAACCGTGACGACTTA	ref_1284_fdr	85	76	94	70	105	60	101	62	122	69
TCATCGGCGTGTCCGG	ref_1284_fdr	85	71	76	94	69	78	99	71	93	60
AACGTTTTTACATCGT	ref_1284_fdr	26	35	38	24	34	32	19	36	31	24
ATGCCCTGGGTATGGG	ref_1284_fdr	7	9	11	9	9	8	10	7	9	7
AAGTTTTTGCTAGGTT	ref_1284_fdr	84	102	109	85	109	89	97	83	118	64
GAAGCTCCGGAGGTCA	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTAAGCGGTACGG	ref_1284_fdr	116	111	111	115	119	110	96	106	163	102
CCGTCATTAAACTGTC	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
ATGATGTGCATCTTTC	ref_1284_fdr	9	10	8	13	4	11	11	13	14	7
TTTATTTCTTATACTT	ref_1284_fdr	412	421	559	435	411	442	471	412	493	369
CATTAATAGACTGTTT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCGATATGGAGGT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
TGCGAGGCAGGCCCGC	ref_1284_fdr	42	29	37	40	36	37	36	26	44	25
GCTGTATAAGCTTACC	ref_1284_fdr	39	97	56	38	79	35	80	28	98	31
AGCTAGCTCTTGTCGA	ref_1284_fdr	26	33	46	38	59	39	47	36	36	33
GGGGGGCCATGTGGGG	ref_1284_fdr	69	86	105	105	79	82	97	93	83	83
TTCCTGGATGTATGAT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
GTGCGGCTGGTGATCT	ref_1284_fdr	89	105	99	82	152	90	123	83	119	85
ATTGTTTAGCGGAGAC	ref_1284_fdr	24	38	49	28	44	30	34	40	24	33
ACTTCTCCTTGTGTTT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCGATGTCTGGTT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
CTCACTGGGTGCGGTT	ref_1284_fdr	48	80	71	68	93	70	86	60	60	50
CAGTCTAATCGCATGT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
TACAATCTCGGCCGGC	ref_1284_fdr	9	6	5	7	4	4	3	5	4	2
GGAACGCCGCAGGATT	ref_1284_fdr	3	5	14	4	6	8	8	8	9	3
TGTTAGAGGGATGGGA	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGCTGTCGTGATA	ref_1284_fdr	54	51	59	63	55	38	54	39	66	47
CTGCATAAGTTTCTTT	ref_1284_fdr	12	10	9	13	9	8	9	13	13	13
ACTCTTGTCGACCTAT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAAGGTTCCTAGG	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
TACGTGCAAGCGTCTT	ref_1284_fdr	141	163	146	144	167	116	180	131	171	115
GAAAATTTAGTGCTTA	ref_1284_fdr	408	448	438	344	467	353	490	367	514	322
GCAGCCAAGGGGAACG	ref_1284_fdr	19	51	41	24	29	16	40	34	43	39
ATAAGGGCCGGTTCGA	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
ACCATATCGCCTCGTA	ref_1284_fdr	217	290	293	234	301	212	326	204	350	200
CAGTCCTGACGATTAT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
GCTACGACCATTATAA	ref_1284_fdr	32	24	29	19	28	22	27	22	39	18
ATTTACTCTTCCTTCT	ref_1284_fdr	22	19	20	24	8	15	14	10	23	13
GCCCAAAGCATTCGCT	ref_1284_fdr	10	16	20	14	14	19	21	9	16	14
TTATATTGAGCGTGCT	ref_1284_fdr	40	44	26	20	54	45	45	26	51	30
CGGTCTCTTCTTACTT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
CCTAACAAGATGTTAC	ref_1284_fdr	25	35	28	18	27	17	31	21	35	14
AATTGGCCCCAGGTTT	ref_1284_fdr	0	0	0	0	0	0	0	0	0	0
CGTAATTAAAAGGTCG	ref_1284_fdr	42	31	55	40	35	29	30	28	44	38
CACTGGGCCATGCTGA	ref_5737_new	12	27	20	19	14	9	26	9	12	19
TCTTGTGCACTGCATG	ref_5737_new	42	57	33	45	61	31	70	38	75	34
TACGCCATTTTTTGCG	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TGCTCCTCGAACGCGG	ref_5737_new	19	28	23	18	25	13	22	18	32	17
GAGAATCTTTTGTCTG	ref_5737_new	230	229	260	187	260	181	252	205	278	163
TGGAGCTGATATTTGT	ref_5737_new	1	3	3	7	0	4	3	5	5	3
GCAGGCTCGCCAGTGC	ref_5737_new	20	10	11	17	21	3	13	5	29	7
CCCGGGCGAGGGACTT	ref_5737_new	61	69	65	63	63	65	62	54	81	66
GGAATTCCATACGGCG	ref_5737_new	40	24	38	46	32	37	35	31	26	33
CAGGTCGTTTTCATTC	ref_5737_new	0	0	0	0	0	0	0	0	0	0
CACGTTCTATTGGGCA	ref_5737_new	34	33	51	39	49	36	50	40	60	37
CGTCAATTCATTCACT	ref_5737_new	6	18	8	2	7	1	17	5	13	3
CAAGGTCGGTCTTTTG	ref_5737_new	30	78	37	35	69	27	69	46	79	25
GACCTATTACACCTGT	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TAATAAAACCTCCCCA	ref_5737_new	23	45	33	21	41	17	59	19	80	20
TGAACTATCGTCGTCG	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TTAGAAAGGCTCGCGA	ref_5737_new	0	0	0	0	0	0	0	0	0	0
ACGGATACAACAGTCT	ref_5737_new	54	41	34	38	54	32	40	35	53	39
TCCGCGTTTTCAACTA	ref_5737_new	58	66	65	60	75	43	77	59	73	39
AGTATACTATTTGTCG	ref_5737_new	0	0	0	0	0	0	0	0	0	0
ACTCCATCGCAGAAAT	ref_5737_new	37	50	42	53	57	36	62	49	53	47
GATTTCGTACGGTTTC	ref_5737_new	8	16	12	8	17	10	18	8	21	9
GAACTTTCGGGGCGAT	ref_5737_new	34	37	31	34	42	33	44	34	39	33
TTCCCCCTGCCACGGT	ref_5737_new	3	5	3	3	5	0	4	4	4	1
CTTAGCCTTAAGCCGC	ref_5737_new	0	0	0	0	0	0	0	0	0	0
AAATTGTCCTGGTACT	ref_5737_new	6	9	3	8	13	11	7	6	10	10
CCCAGTACTATGGGGT	ref_5737_new	303	341	303	259	311	226	321	266	376	263
CTTTGGTTTTGCGTTT	ref_5737_new	249	228	268	227	218	194	206	181	229	193
GTTAAGGCCTTAATAT	ref_5737_new	0	0	0	0	0	0	0	0	0	0
GGGGCCTTTGTTTAAA	ref_5737_new	42	45	36	32	44	24	34	40	44	24
ATTCTATTGTACGGTA	ref_5737_new	55	76	59	59	66	51	75	38	78	45
TGTTAATAAAATTATT	ref_5737_new	41	49	62	48	44	43	51	43	58	45
TGAGTTCATCCTTTCC	ref_5737_new	51	95	67	64	82	66	61	61	83	65
CCGTTAATCGACGCTT	ref_5737_new	37	41	48	31	50	32	49	33	56	20
CCTGTGGCTCTTATCT	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TCGGCGGCGCAATCGT	ref_5737_new	15	15	15	12	21	6	13	9	13	10
GCACTGGACTTCATCT	ref_5737_new	8	15	15	8	7	11	13	6	9	3
CCTTCCGTCAGCTTGC	ref_5737_new	3	3	5	1	3	3	1	2	5	1
AAATTGTCCTGGTGCT	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TTTGGTGTTGTATTAG	ref_5737_new	54	74	71	64	83	55	82	55	80	40
CAGCACCCGCCAGAGC	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TGGCATCGCTTCATGA	ref_5737_new	92	77	112	77	84	88	90	67	85	76
ATACTTGCTTACGGAG	ref_5737_new	91	96	106	96	104	99	108	89	149	72
GAGAAGCTTTTACTGG	ref_5737_new	16	25	29	31	26	19	22	14	26	23
ACCTGCTCCATTGTGC	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TCGCCAGGGATTGGTC	ref_5737_new	22	48	39	28	57	18	68	26	61	36
GCGTTGTAAGTGCGGT	ref_5737_new	25	48	42	31	52	30	32	22	32	32
CTCCTTTTCGACCTTG	ref_5737_new	43	56	42	40	66	43	69	38	66	32
AGTAGATGTGCGGTGT	ref_5737_new	10	9	14	16	14	19	16	14	25	9
GGACTCCATAGTTAGG	ref_5737_new	41	70	70	48	65	44	72	74	70	51
CACACGAGCTGAATCA	ref_5737_new	63	87	92	67	105	52	79	60	79	55
CATAAGTTGTAATGTT	ref_5737_new	0	0	0	0	0	0	0	0	0	0
ATACCGTTCAAATCGC	ref_5737_new	33	49	27	23	43	29	34	29	37	44
TTTTTATACTGACATC	ref_5737_new	16	27	22	12	19	14	15	18	18	8
GTCTCTGCCGACTTGT	ref_5737_new	15	29	15	25	30	20	29	15	20	17
GTCTGAATGCCATGCC	ref_5737_new	38	54	33	33	47	34	50	27	55	22
TAAGCTCGTGCTGACT	ref_5737_new	3	4	4	4	5	1	1	2	5	3
TGGAGGTCAGCAGTAT	ref_5737_new	15	7	11	8	19	3	16	4	10	7
TTATGGGTTATTTTTA	ref_5737_new	138	117	141	134	137	94	126	110	135	92
ATATTTTGACTTGATC	ref_5737_new	125	146	159	116	147	112	150	94	157	119
ATTTACGGTCTTTCGG	ref_5737_new	77	83	90	73	93	69	91	77	68	72
TTGACATTTGTCACAC	ref_5737_new	0	0	0	0	0	0	0	0	0	0
GGTTGGCATCCGTTGG	ref_5737_new	38	31	29	23	33	31	31	21	51	20
CTAATACTCTCGCTTT	ref_5737_new	35	17	28	21	16	21	32	26	13	12
GATCAACGGGCCAATT	ref_5737_new	44	54	44	47	56	46	56	31	61	35
GCCCAGCGTGGAGCGT	ref_5737_new	58	64	91	65	84	68	82	84	70	80
ACGTATTAAAGGGAAT	ref_5737_new	0	0	0	0	0	0	0	0	0	0
GGTTTGACGTAATTTT	ref_5737_new	0	0	0	0	0	0	0	0	0	0
TTGAATAGTCACTCTG	ref_5737_new	0	2	0	0	2	0	5	1	0	1
ACCTACAGTGGCAGTA	ref_5737_new	27	29	41	31	31	24	27	26	33	24
AGCGATACGCTCTGAC	ref_5737_new	4	6	4	4	3	3	3	1	6	2
GGACCGTCGAGTTTAT	ref_5737_new	22	27	13	17	27	7	29	13	23	15
GATCTTGAGCGCGGCT	ref_5737_new	13	44	12	12	20	14	24	25	32	18
GGCTCGTCGCGTTGCC	ref_5737_new	40	45	44	21	38	31	51	27	43	33
GGCTCTCGCTTGGGGG	ref_5737_new	6	2	1	2	8	0	3	7	3	3
CCGGGGGGCTATCATA	ref_5737_new	1	2	0	1	3	1	0	0	0	0
TATATATTTGTCCTAA	ref_5737_new	15	17	18	11	17	13	13	11	17	10
TCTCTTGATCACCGCT	alt_3893_missing	21	16	36	13	35	28	29	20	31	18
ACATTGTGATAATAGG	alt_3893_missing	184	254	215	211	294	167	347	168	259	181
GGTTCCGTTTAGCGCT	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
TCTCGCAGTATTGTTG	alt_3893_missing	18	20	24	23	24	24	28	31	27	19
GTGGCTATGCTAGGAC	alt_3893_missing	26	65	37	36	62	30	61	36	51	28
TTCGGTGGCAGAAGCT	ref_3893_missing	245	278	294	299	316	251	328	242	315	221
TCTGGCATTTTAGTCA	alt_3893_missing	21	32	39	19	33	27	25	20	27	19
CCAGTTGATCATGTCA	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
AGTATCAACCCGGGCC	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTGACTTCTGTA	alt_3893_missing	62	69	68	64	61	64	64	61	86	49
AACTTTAAAGTATCAA	alt_3893_missing	10	4	7	3	7	14	6	10	9	8
TCGATAAGGTGTTGTT	alt_3893_missing	15	36	21	33	37	22	44	22	26	18
GTTTACCGAAGTACTC	alt_3893_missing	8	10	7	11	7	5	11	3	9	2
TTAGTCAGGACTTCTT	alt_3893_missing	13	16	11	18	10	10	11	6	18	13
GTTGCGGATGGATAGC	alt_3893_missing	27	48	52	39	38	47	61	33	55	35
TCTATGTCGTAGCGTT	alt_3893_missing	100	138	111	108	96	94	149	118	144	80
CGGTCCGGACGTTTAG	alt_3893_missing	31	28	35	27	46	33	45	39	49	39
TCTGGCATATTAGTCA	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
AACGCTAATGTTTAGA	alt_3893_missing	25	20	32	19	35	24	31	20	27	18
TGCGTAGAAAAAATGG	alt_3893_missing	104	74	117	66	79	79	84	75	102	62
TCATGTCATCTCGTTT	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTGGGCCATCTG	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
GGTTGCTGGTTGTATC	alt_3893_missing	125	116	127	96	147	104	137	106	149	94
TAGGCATGGCCTGCTA	alt_3893_missing	107	102	140	98	120	103	114	102	121	101
AACTCGCGTTCCCAAG	alt_3893_missing	4	18	8	10	13	3	11	6	7	6
ATCAGCAATTGGGGAT	alt_3893_missing	36	44	38	21	54	29	38	34	57	41
TGGACTTCGGGCCTTG	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
CAGCACTTGAGTGAAA	alt_3893_missing	16	38	22	16	44	12	41	16	45	14
TTTTCCGGAAATGTAA	alt_3893_missing	0	0	0	0	0	0	0	0	0	0
GTGGTCCAATGCTTTT	alt_3893_missing	91	124	104	58	112	64	133	59	135	87
ACAGCCAGCATCAATC	alt_13_reverse	23	53	37	23	43	27	58	12	51	24
CAAACCGCCTTTCACA	alt_13_reverse	2	0	0	0	1	0	1	1	1	1
TCGAATTTCTTCATAA	alt_13_reverse	6	17	11	10	18	4	13	13	23	7
TAATGCAGGGTCCTTC	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCGCTGAGCAGAT	alt_13_reverse	38	27	25	26	25	26	28	38	38	22
ATGGCACAGTGTTCAT	alt_13_reverse	184	244	175	173	268	139	249	153	279	139
TCCAATGTGGGCCGCT	alt_13_reverse	3	5	5	4	8	4	7	6	7	5
GTGCGATTATTACCTG	alt_13_reverse	20	36	22	17	33	14	43	8	35	15
TCTGTCAGGAAAATAC	alt_13_reverse	48	67	48	50	52	46	53	42	41	39
TTCCCCGTTTTGCTCA	alt_13_reverse	4	20	3	8	17	5	17	5	17	3
TGATATCTAAGCGTTT	alt_13_reverse	153	198	184	137	171	142	214	154	195	125
TGACTCCGGCTTTTGT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTTACCCGATGTA	alt_13_reverse	83	123	118	82	143	101	164	73	155	91
TCACTGGTTCCTATAT	alt_13_reverse	26	35	26	32	41	28	46	13	38	20
TCGTGCTCCAGCGGAT	alt_13_reverse	31	32	24	32	33	28	43	13	46	24
GTTGTACACGTGGGGT	alt_13_reverse	40	46	31	41	51	24	49	34	46	32
GTGGCCTGGCCGGCAC	alt_13_reverse	39	75	45	30	72	42	90	28	93	28
TTGGCCGTCGTTGGCA	alt_13_reverse	17	40	22	21	20	18	31	23	42	23
TTGCCGTCAATAATCA	alt_13_reverse	68	100	94	96	115	70	123	64	117	75
GATTGTGAATGGCCTT	alt_13_reverse	80	132	120	75	115	77	116	82	109	83
CTCCAGGGTCGTGCGG	alt_13_reverse	13	23	28	26	20	16	25	14	21	14
TGGTTCGAATGTCGAC	alt_13_reverse	86	88	93	74	108	58	81	69	81	55
GAAATGCCACGTCATT	alt_13_reverse	13	8	14	4	16	11	14	15	18	12
GTTCCCTCTGCCCGGG	alt_13_reverse	12	7	4	10	6	4	12	4	9	4
TAACAATTCATTCATC	alt_13_reverse	35	40	27	22	21	23	37	24	26	28
GACCATTAGGGATTGC	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CACTCGTTCTCTACCT	alt_13_reverse	14	18	21	25	21	13	28	19	31	13
TGCTCGCGGAACTGAT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGGCTTGTGCTTG	alt_13_reverse	19	39	35	28	29	20	44	21	38	25
GCCAAACGTTGATTTT	alt_13_reverse	83	132	77	62	144	77	124	72	141	72
AGCTCTAGTAATGGTC	alt_13_reverse	12	21	13	11	18	7	18	10	14	15
GAGCTTAGGCTCCTCT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TATGGCTTGAATATCT	alt_13_reverse	64	62	56	76	87	46	71	50	93	57
TGTACTTAGGTCTGCC	alt_13_reverse	20	24	26	14	26	20	26	13	27	11
TTTATTCGTGCTGGTC	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TTCATATTACGCTTTT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CAGAAGTATCTCTTTG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGTTTCAATTGTT	alt_13_reverse	30	62	38	48	43	42	34	30	53	20
GTACACGCTCTAAAAG	alt_13_reverse	28	33	30	21	39	25	47	31	46	32
GAAACGGATTAGATGT	alt_13_reverse	85	95	116	80	98	79	109	87	129	62
GCTAAGCTTTGAAAAT	alt_13_reverse	10	12	13	4	12	8	13	6	9	7
CCGTCCCGTTTCCAAC	alt_13_reverse	2	6	6	6	6	6	17	4	5	0
CGATGTTGTTACTTAT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGCTCACAACGTC	alt_13_reverse	19	51	54	27	30	30	35	29	55	21
CTACATAGGGATAGTC	alt_13_reverse	7	18	14	15	19	7	20	18	15	8
CCATTTTCTCCCGTCT	alt_13_reverse	31	44	35	33	45	26	54	29	45	19
GACTGGGATGGCAAGC	alt_13_reverse	43	34	42	46	62	38	58	35	56	40
AAGTCTACATCATCTG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TACTACTTTATAGACA	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGTGTCTACAATT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTCGGCGTATATT	alt_13_reverse	51	45	50	44	45	36	60	46	59	46
GGGGCCCGCCCCAATG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
ACGGGTACCGTATTGT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGTTCGACGTCGG	alt_13_reverse	45	72	49	60	77	50	76	50	65	44
CGCCGCTGACTTTTTT	alt_13_reverse	86	106	110	97	122	83	144	66	130	67
GGCACTCACGTCGCGG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
AAACTTGTCTTTCTGG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCATGGTAAATCG	alt_13_reverse	9	12	10	7	13	7	9	7	10	10
GTTACGGCTTAATGGG	alt_13_reverse	2	1	3	0	1	0	4	3	6	1
GTAAGGAAGTTCCTGG	alt_13_reverse	32	29	40	37	32	39	33	45	36	22
GTCTTCTGGCAAACGG	alt_13_reverse	1	2	2	2	4	4	2	1	2	0
CGAATATTTAAGTCGT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCGGCTAAGGTAC	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGCTGATCCTACC	alt_13_reverse	19	67	44	29	71	29	62	23	98	29
ATACTACAGTGCATGG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTGTCGTATCTTT	alt_13_reverse	35	43	44	32	37	28	42	25	45	26
GGGGCATAGTGCATGT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CACGCTGTCTAATATA	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
AACCTCAAAGAAGTTT	alt_13_reverse	50	62	48	54	37	44	75	43	83	42
CCCAATCTTCTCCCGG	alt_13_reverse	32	56	41	36	46	29	40	37	35	38
GCTCTTTGCTATAGCC	alt_13_reverse	3	12	11	4	7	4	4	8	5	8
GGCTGAGATTTTGCCT	alt_13_reverse	30	44	41	17	31	26	50	18	33	24
ACATGGGTCACAGCAA	alt_13_reverse	15	37	16	18	28	16	26	27	28	22
GATATTAAACAAGGTT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
ACTAACGTGTAGTTAT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCTAACGTGTATT	alt_13_reverse	20	45	34	32	46	17	61	29	50	26
CTTCTTTAGTAGCGTA	alt_13_reverse	97	112	129	85	111	80	111	81	116	96
GCGACCAGATTATTGG	alt_13_reverse	20	19	17	17	15	23	25	16	23	10
GCGGACGTTCTTTGCC	alt_13_reverse	7	12	9	15	8	10	7	8	22	8
GAAATACGTTTCCTCT	alt_13_reverse	20	15	12	15	23	17	22	16	20	19
GTGGCTATTTTCAGTA	alt_13_reverse	22	20	18	18	32	11	29	9	18	14
GAACGCCGAAGTTTGA	alt_13_reverse	67	77	71	50	81	58	68	61	108	69
TTCTCTTTAGGATGAC	alt_13_reverse	32	51	43	31	55	36	58	38	52	29
AATTCGCAAATTGGGG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TGCGCACTAAGCACCG	alt_13_reverse	32	50	33	23	37	38	49	41	44	39
GTCTTTGAGTTCCTTC	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGTAGCATCAATT	alt_13_reverse	15	32	16	21	18	20	20	12	17	11
CGAATTGTGTCGCGTT	alt_13_reverse	9	16	13	13	21	20	21	12	25	12
ATGAGGTTCTGGGTGC	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
GTGATCGTGCTACCTG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CCGCGGATGAGGGGGT	alt_13_reverse	125	196	137	151	204	123	232	121	232	121
GGGTCTGATTCATTTG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGACCCTAATTTT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTTTTGGCTTAAA	alt_13_reverse	25	25	27	18	31	23	35	26	41	20
CTAAGGGTCTTTAAGG	alt_13_reverse	16	19	28	12	16	16	26	21	27	17
ATGTTTTACGGGTAGC	alt_13_reverse	48	63	58	53	73	50	73	49	74	59
TTTCTTACTTATGCCT	alt_13_reverse	7	3	6	9	20	2	4	3	13	5
GATGCGTAATCTTAGT	alt_13_reverse	17	17	15	12	10	13	13	12	13	7
GGAAATTACATCAGAT	alt_13_reverse	15	25	18	15	21	13	18	14	26	17
GATGCCAACAGTAATT	alt_13_reverse	43	56	63	53	70	57	79	51	77	52
CGTGTTTAATTTGCTA	alt_13_reverse	11	14	7	12	7	18	20	9	16	8
CGCGCACGGTACTTTC	alt_13_reverse	31	56	52	28	41	35	44	33	45	29
TGCGCTTAAAACCAAG	alt_13_reverse	16	23	24	13	23	15	33	18	38	11
TGATTTCATAGCATTT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTTTCACGCTTGT	alt_13_reverse	5	1	4	0	2	3	3	1	2	4
TAGTTCGGTGCCTTTT	alt_13_reverse	16	19	25	16	21	14	20	17	22	12
CTCCAGCTCGCTATCG	alt_13_reverse	30	75	48	46	69	39	69	25	87	54
GGTCCCGTGGGCTCCA	alt_13_reverse	6	4	4	2	6	10	5	5	2	5
CCATGTGCGGCACTCA	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
TCTAAGGCCGTACCCG	alt_13_reverse	5	11	4	2	6	3	5	4	8	10
CCGATTTGTAGAGTCA	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
GCCATGTCCACCCTGC	alt_13_reverse	7	8	16	10	6	5	1	7	17	8
CGTTAAGCATCGTGAT	alt_13_reverse	9	11	13	7	15	9	19	9	10	13
TCGGTCCATATTTAAG	alt_13_reverse	12	33	17	22	29	19	34	11	35	18
GCCTTCGTCTAGCTAA	alt_13_reverse	38	56	34	49	53	28	66	20	56	19
CGCCCTCCACAAGGGA	alt_13_reverse	12	21	17	10	16	14	25	9	15	15
TGTTATGCCACTGTGT	alt_13_reverse	3	4	3	2	3	2	8	4	4	3
ATTAGAATTGGTGTGA	alt_13_reverse	2	4	7	8	8	13	8	5	13	7
TCGTGCCCCGATTCTG	alt_13_reverse	15	24	20	17	17	15	26	12	24	22
CTCCCAGGTAGTTGAG	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
CTCAGATATGCATGTT	alt_13_reverse	27	64	37	40	56	29	52	34	59	29
TACTGATTTAACGGTG	alt_13_reverse	16	22	33	30	33	38	58	20	37	16
GGTGTTTTATTTCAAT	alt_13_reverse	46	27	43	32	44	24	44	37	56	25
GCGTCACTTGCAGTTT	alt_13_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGAGAGTTCTTTG	ref_1252_upstream	55	77	79	30	58	58	74	68	67	53
CGGCTGTCATTTTAAT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CTGCACAAATACGGCT	ref_1252_upstream	44	42	33	56	52	25	55	38	54	40
TATATATATTACGAGT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTCACAAATCATGTGG	ref_1252_upstream	20	21	22	20	23	25	20	14	38	25
ATGTATAAGCTTGTTA	ref_1252_upstream	39	51	37	31	55	26	47	32	57	44
GCGTTATTTTAGTTAT	ref_1252_upstream	63	112	110	82	73	78	84	95	92	82
TACCAGTTGTTGTTTA	ref_1252_upstream	20	25	38	28	28	18	31	30	24	23
GGTAGACAGGCCTGCC	ref_1252_upstream	7	6	7	6	5	7	10	2	4	0
GCTGTCTGGCCGAATC	ref_1252_upstream	58	57	66	54	43	60	36	59	60	28
GCAATGTCTCAAAGCA	ref_1252_upstream	30	54	42	48	37	43	48	53	51	36
ACGTTGAATTGGCTGC	ref_1252_upstream	24	15	20	20	17	14	27	15	22	19
GATTTAGGCTAGCCGC	ref_1252_upstream	9	7	8	4	6	10	6	10	8	9
ACTAGGTGCTTCTCAT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTCGAGACCCCAT	ref_1252_upstream	133	151	167	117	106	135	154	128	153	132
GAGTATCAGTGGTTGC	ref_1252_upstream	3	7	3	4	8	1	0	4	3	1
CGTGAGCAGCTCTCTT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTTTGTTCACAAT	ref_1252_upstream	14	16	16	14	21	11	22	9	20	9
ACTATTCTTCCTCATG	ref_1252_upstream	9	10	13	7	7	12	8	6	4	5
ACGAAGGCTCAGCGGG	ref_1252_upstream	13	22	21	14	13	19	17	13	21	16
AGATGGGCTCGCGTTT	ref_1252_upstream	10	9	14	7	9	10	16	7	2	6
GTTACGTTCGTTCAAT	ref_1252_upstream	13	16	13	11	17	10	16	17	14	7
TTTTTAGGTTCCTGGC	ref_1252_upstream	18	20	11	14	18	9	26	13	16	21
AAACACCAGCAGGGCG	ref_1252_upstream	9	3	15	15	12	8	10	9	7	11
ACGGTAGACTGTGACA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGATACCATGCCCGAG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGAATTCGCTCCATGG	ref_1252_upstream	12	8	12	5	15	7	8	5	3	4
TGCATATTTCTGCTTA	ref_1252_upstream	16	22	25	23	15	17	14	12	13	16
TCGCCAATCGCTATGC	ref_1252_upstream	4	2	9	5	8	3	6	2	5	3
GCGCTACGCGCTCGAT	ref_1252_upstream	26	14	27	25	15	18	14	15	20	11
CTGCGTATCTTTCCGC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTGGTCATCTCAC	ref_1252_upstream	19	11	12	10	11	18	15	10	13	12
CTCGGTCCGATCTGGA	ref_1252_upstream	157	142	174	137	140	135	165	138	145	120
TTTGGGCCCTCCTTAG	ref_1252_upstream	17	17	16	20	23	9	27	17	11	6
TCGTCATGTATGCTGG	ref_1252_upstream	15	13	21	18	19	21	15	19	24	19
GGATCTAGTGCTATGT	ref_1252_upstream	2	0	2	0	3	0	1	4	2	1
GTTGTTGCCTCACCAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCGCTGCCTCTCA	ref_1252_upstream	3	5	2	3	8	2	5	5	5	6
TGCTACGGGGGTTCTA	ref_1252_upstream	23	38	37	33	36	28	32	36	24	34
TATGTACCTACTCTAG	ref_1252_upstream	3	12	16	7	13	11	10	10	11	9
ATGCTTTGTCTGATTG	ref_1252_upstream	27	14	23	21	21	22	26	19	22	12
TTCGCACCAATATTTT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCATACGGGAGCG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CGACCCGCTTGGGATC	ref_1252_upstream	5	7	9	12	6	7	9	13	6	16
ACGGTTCCGGGTTGGC	ref_1252_upstream	19	20	16	8	22	16	15	20	17	12
TGAGGGCGTTGAACAT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCCTATGGGATTAATC	ref_1252_upstream	36	42	40	42	43	25	50	34	50	31
CAAGCGCTAGAGAGAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGGCCTCCGTCTG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CACGTTGCAAGGTTGC	ref_1252_upstream	8	5	5	11	11	9	9	7	2	9
GTACGTCTCTGGGATG	ref_1252_upstream	8	2	12	4	15	3	15	3	8	12
TTCTTGTGCCGTAGTA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTGACCGTGGTAGTAT	ref_1252_upstream	29	47	41	33	42	51	37	28	30	33
TATTCATATGAGTTCG	ref_1252_upstream	75	99	101	83	94	62	107	64	112	67
TCTTATGTGGCTGCTT	ref_1252_upstream	18	14	26	18	28	28	30	12	25	18
TTCGCCCTGCTTTGTC	ref_1252_upstream	12	8	20	10	3	10	8	12	4	7
CTGGCTCGGTCATACT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
ATTATTCCACTATGAC	ref_1252_upstream	2	3	6	1	5	1	2	2	4	3
CACTAGTATCTGAGCC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGATACACCGTTAGTT	ref_1252_upstream	67	73	91	71	75	69	91	78	74	72
TCTGGCATAGTGATTA	ref_1252_upstream	81	92	89	82	91	83	88	58	84	67
TTGAGCATCACCCTTT	ref_1252_upstream	5	19	7	11	7	5	12	3	6	4
CTTATGATCTTGAGAT	ref_1252_upstream	4	8	9	7	8	10	11	10	11	5
AGGTACCCCCTGAAAG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTATCGTCAACCGAAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGGGTTTAGATTC	ref_1252_upstream	30	32	23	22	24	25	32	30	36	15
ATGAATCGTTTTTTCA	ref_1252_upstream	145	151	176	170	171	141	161	115	169	139
TTAATAACATCCAACA	ref_1252_upstream	12	26	23	18	21	18	25	18	22	13
TTTAATTTTATTTAAA	ref_1252_upstream	44	54	58	68	56	62	62	42	64	31
CTGCAAACGTCAGGGG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTCCGTATCACAC	ref_1252_upstream	6	4	3	2	4	2	5	2	3	2
CTTCCCGAAATATCTA	ref_1252_upstream	84	108	91	70	96	81	101	84	102	60
CGAACGACTCCTTCAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CATCCAGCGCAACCTC	ref_1252_upstream	0	1	1	2	0	1	1	3	2	0
ACCCTGACTGACTATC	ref_1252_upstream	15	30	24	21	33	19	39	26	36	23
GACGGCGATAAATGCC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTTAGATGTACAC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGACGTGGTAATC	ref_1252_upstream	9	11	17	19	11	14	11	3	12	10
ATCACATTTCGCTGTC	ref_1252_upstream	39	40	45	37	31	39	38	38	34	42
GATGCGCTGGGATTCC	ref_1252_upstream	28	13	27	31	34	30	33	25	26	29
TCGGTGTTTTCTACGC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAGTTTAATCTCT	ref_1252_upstream	35	43	44	35	43	31	31	43	49	24
GTAAACTTGGTTGTTC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCGCAGGGTGACCTCC	ref_1252_upstream	24	35	35	27	24	22	29	22	31	24
TCTCGCTTGTAGTAGG	ref_1252_upstream	38	39	45	46	51	40	40	28	45	34
TCCTCTAGTCTAAGGA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GACTCAAAGTGCAATA	ref_1252_upstream	13	18	16	11	23	9	17	18	14	14
ACTACTTGATAGCTCA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGCATCCATCGCT	ref_1252_upstream	8	15	15	7	12	5	7	5	11	7
TGGGTCACTGTAAAAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
AAAACCAACGCTTGAC	ref_1252_upstream	10	14	7	15	6	5	9	8	9	4
CCTGCGAGTTTAACAG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGACATCCAACGA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTATCGCAGTATAAGG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCATTCTTCATTT	ref_1252_upstream	5	5	0	2	2	4	4	1	1	3
ACAATTTATGCTGAGC	ref_1252_upstream	60	47	60	70	74	48	57	60	65	58
TTACTTCCTTACAAAC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTTATAACGGCCCGGA	ref_1252_upstream	11	15	12	10	14	17	13	7	11	14
CTAACCGTTGTGTTCT	ref_1252_upstream	0	0	2	1	0	0	1	0	0	0
TCTTGAGAAAGGTGTC	ref_1252_upstream	11	4	9	16	18	16	6	6	20	4
AGTGTAAATGTTAAAG	ref_1252_upstream	88	90	112	111	107	125	118	93	108	100
ACCATGCTTCGATTGC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCGATCCAAGCAATAT	ref_1252_upstream	18	23	30	19	31	24	22	23	19	12
AGTAAGTAGGCGCCAA	ref_1252_upstream	9	5	19	4	11	8	10	5	4	5
ACAATAAGCCCTAACG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGACAAAAGTTCT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TAAATGTCACTTGATT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTTGATCTACATTTCG	ref_1252_upstream	14	15	21	13	17	14	10	14	8	5
ACGTTCTTAGTTTTGT	ref_1252_upstream	28	32	27	20	24	19	20	21	33	28
TCAGGCACAGTTCCCA	ref_1252_upstream	4	1	4	6	2	4	0	1	0	2
TGGCCCTTTGAGAAAC	ref_1252_upstream	47	33	46	49	32	42	37	25	41	38
GCAGGCCGTTCGGAAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGCTCGTGTGAAC	ref_1252_upstream	98	18	128	91	15	82	16	91	17	103
ACAAGAACTTCCCTTT	ref_1252_upstream	85	69	96	82	70	70	71	63	67	66
GCGTTTCGTGGATTGT	ref_1252_upstream	15	8	15	17	20	10	17	19	17	16
ATGGAATCTACCTAGG	ref_1252_upstream	1	3	3	4	3	1	3	5	3	7
ATTGATACCGATTTCT	ref_1252_upstream	30	41	47	34	27	57	44	32	44	25
AGCCGTTAATAGCTTC	ref_1252_upstream	117	179	142	112	179	122	187	125	176	105
AAGCCACAGTTCGACT	ref_1252_upstream	42	39	43	44	50	31	54	36	57	46
TCTTTTGCATATGCTG	ref_1252_upstream	62	95	110	85	99	73	109	78	102	62
GCATTCTCCTTAGACA	ref_1252_upstream	31	36	42	31	35	39	40	32	29	30
CACTTGTATCTGAGCC	ref_1252_upstream	47	55	53	38	59	34	71	34	55	32
TAGATTATGGACCAGC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGTGCAGGTCGCT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCTTCCGTAAGCC	ref_1252_upstream	29	14	22	25	23	23	27	23	32	15
TCGCTCGCATTTCCGG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCATGTGCGCGCCAGG	ref_1252_upstream	26	22	23	24	10	21	25	26	15	19
AACCTTGTCAGTTCGT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTTTAAGCCGACTTTG	ref_1252_upstream	36	34	36	32	34	45	45	37	48	31
ACTCCCACCTTATTGT	ref_1252_upstream	11	9	4	9	9	10	18	8	11	8
ATTGAAATTCTTCAAT	ref_1252_upstream	6	23	24	21	20	23	21	18	17	13
TGGGCAACCTCATCGG	ref_1252_upstream	19	20	28	28	14	17	23	19	33	21
ATACAGGGCGATACCA	ref_1252_upstream	12	13	20	16	15	19	20	15	18	12
CCTCAGCGGTGTGTCA	ref_1252_upstream	17	44	34	21	26	18	31	15	31	22
GGAGTGGTTGTGTGTC	ref_1252_upstream	40	36	28	19	27	23	36	24	36	17
TCATCGGCGCACTTAA	ref_1252_upstream	78	138	108	94	166	70	156	76	144	86
TTTTCCGTCTGCCTTT	ref_1252_upstream	18	10	16	11	15	11	8	4	11	11
TGGCGAGGGTTGTCCT	ref_1252_upstream	24	12	24	21	14	12	17	12	10	16
GGCCTCGGTAGGTTCA	ref_1252_upstream	41	48	56	50	52	55	63	40	49	49
ACTTTATTTCTTAACA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TTATAAGCCCGTCGCG	ref_1252_upstream	12	15	13	17	17	12	6	9	13	15
GCTCGATTCATCTCCA	ref_1252_upstream	22	21	25	21	22	27	19	20	30	18
CAGGGGTGGAGGGCTA	ref_1252_upstream	21	28	13	11	17	13	16	12	11	19
CTCATTTCAGACCCAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CAAACTTCACGAAAAG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGATTGACTTTTT	ref_1252_upstream	16	16	28	20	20	15	19	16	17	13
GTTTGCCCTGTGACGC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTTAGAACTGCGT	ref_1252_upstream	43	41	39	30	43	35	45	22	44	17
TTCCGCGCGTTGTTTA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCTCTATGTTTGT	ref_1252_upstream	43	59	43	40	53	43	66	43	53	44
ATCTTTTCTGCTGTGT	ref_1252_upstream	25	22	27	18	13	16	16	20	21	20
TTCGTATAGTATAATA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGGGGGTCAAACC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGACTTCAACTAA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TGAGATCCAGGGAAAA	ref_1252_upstream	28	39	50	30	41	32	36	42	42	27
CTCCATTGGGATATCT	ref_1252_upstream	55	83	85	53	74	65	91	59	65	70
AGTCGAATTGTCAGCC	ref_1252_upstream	44	40	44	39	55	50	52	42	58	39
TGGGAGTACTTGCCTA	ref_1252_upstream	4	7	8	6	2	6	6	6	7	10
AATGCCAGATCCAGAG	ref_1252_upstream	1	5	3	3	11	3	6	7	4	3
ATGTTGGAAAAATTGC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACAAATTGTAGCCTGA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGGAGGGAAATAG	ref_1252_upstream	46	42	45	49	43	46	51	36	63	46
AGGGATGTCTGAGTTT	ref_1252_upstream	45	45	35	34	33	35	32	27	39	33
TCGTCGGACTCGACAG	ref_1252_upstream	45	72	31	36	64	32	49	30	52	34
AAGTCGACGCCTCTGG	ref_1252_upstream	12	12	14	15	28	15	10	15	17	11
CTCCGCGCTACGATAT	ref_1252_upstream	2	7	4	6	5	3	7	8	16	5
TCAGGTTAAACGCGGG	ref_1252_upstream	11	12	7	13	5	7	8	12	11	10
TGCAATGGTCTATGTT	ref_1252_upstream	0	1	2	1	2	1	0	0	1	0
GCCTTACCACTTGTTG	ref_1252_upstream	9	4	6	8	6	3	11	11	7	2
TACTTACCTCTGAAAC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
AATACTGAGGCTCTCT	ref_1252_upstream	2	3	4	4	1	1	4	1	1	3
CTAAGGTTACGCGCCT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
AGTGAATTACAGCTCA	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCCATATCTTATC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
ACGTAGGCTACTGCTT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
GGGATTCATGAACGTT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCTGGTGAACTTGATT	ref_1252_upstream	8	4	15	14	9	5	10	8	8	7
ATTGTTCTCTTAGGCC	ref_1252_upstream	19	8	18	13	4	9	15	6	13	13
GTTTCTACGATGCTTG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TACCCACTACGCTATG	ref_1252_upstream	19	37	39	18	26	26	23	22	24	21
CGTACACTTCTCCTTA	ref_1252_upstream	0	4	3	1	10	1	2	2	2	7
ACTGTGGGGGTATCTA	ref_1252_upstream	31	34	35	25	29	36	41	37	34	32
TTGTTTAAGGTCTTGA	ref_1252_upstream	31	40	37	44	18	27	39	33	37	27
ACTATCGACTCGCTTG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCTCTAAAAAGTT	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGGTGCACCATCC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCGCCGAGAAGTC	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCCGACTTCGGTG	ref_1252_upstream	0	0	0	0	0	0	0	0	0	0
TACGTATAGGCTTCTA	ref_1252_upstream	2	1	3	0	1	2	1	1	4	0
TTTGCTTTAAGTCTCG	ref_1252_upstream	1	2	0	2	3	1	7	1	4	0
CTTTCGACTGTTTAGC	ref_1252_upstream	52	41	51	51	62	49	58	58	53	39
GTAATGCATAGCCCAA	ref_1252_upstream	39	57	50	35	46	32	52	29	47	27
CCTTAAGGGGTTAGTG	alt_5809_new	3	6	6	1	6	5	12	1	6	5
CCATATGGGGTCGGGA	alt_5809_new	4	7	0	1	2	1	4	2	9	2
CAAGCTGAATGAGTCA	alt_5809_new	0	0	0	0	0	0	0	0	0	0
CTCTCAGTAAGTATTT	alt_5809_new	21	35	26	21	30	22	27	30	27	28
TCCCGGTCGTATTGAC	alt_5809_new	7	23	3	2	24	5	21	9	30	5
TACTAAAATAATAGAA	alt_5809_new	1	2	1	1	6	3	5	2	1	3
GCCTGTACCGGTTGTG	alt_5809_new	41	48	58	35	64	53	58	46	74	46
ACTCACTCTTGGCATG	alt_5809_new	20	7	30	18	21	13	28	17	28	19
AGCTTGTCCCGCTTTC	alt_5809_new	30	26	24	34	23	16	16	19	22	21
CCACTTAATATACCTC	alt_5809_new	2	16	4	3	7	3	7	8	13	3
TCAGACCTTGTCTCTT	alt_5809_new	15	31	30	26	20	22	26	13	25	15
AGCACAGCATTCCTAG	alt_5809_new	0	0	0	0	0	0	0	0	0	0
GAGGGTTTTATCACGG	alt_5809_new	32	24	31	38	27	32	34	21	31	23
CTTACAGTCGCTTCAA	alt_5809_new	7	9	10	5	11	6	14	5	9	5
TTGTATGATCATTAGG	alt_5809_new	5	4	5	1	4	6	1	8	6	2
TTGTGGCCACTTGTAA	alt_5809_new	0	0	0	0	0	0	0	0	0	0
ACTACACTTTTGCCGA	alt_5809_new	29	28	28	27	22	15	24	30	22	24
GGTTGCAACTCCCATT	alt_5809_new	100	145	141	105	139	110	178	94	162	89
TTACCGTAGCAGGAGC	alt_5809_new	0	0	0	0	0	0	0	0	0	0
GTATCTCATGGACCAC	alt_5809_new	18	19	12	11	16	17	22	12	29	20
GGCTGCGTAGCGCTGT	alt_5809_new	79	71	83	73	78	55	79	60	70	65
TGGGTAGCTAGCTTTG	alt_5809_new	9	6	10	7	9	9	10	11	12	8
TTTACACTTCTGTGAC	alt_5809_new	44	44	47	43	44	30	57	41	52	29
GGCGAGGTGCTACCTA	alt_5809_new	36	43	62	64	61	43	49	48	61	45
GTACTACCAATTGCTG	alt_5809_new	36	43	65	39	32	46	37	44	37	36
GGTTATGATGTGTCAT	alt_5809_new	18	7	5	16	20	11	18	14	10	6
GGCCTACCTCCTTACA	alt_5809_new	0	0	0	0	0	0	0	0	0	0
TCAGAAATTACGAGGG	alt_5809_new	0	0	0	0	0	0	0	0	0	0
CTATGTTTCCATAACG	alt_5809_new	35	36	54	48	30	35	42	44	66	37
TTAGACTGCTCGTTAT	alt_5809_new	56	62	67	56	60	54	56	59	55	52
CCCGTTTGCTTCGCTA	alt_5809_new	1	9	5	8	15	11	11	7	11	6
ATTATGTCTTTAGTGT	alt_5809_new	0	0	0	0	0	0	0	0	0	0
AGACGGCACAAAAAGT	alt_5809_new	81	87	115	90	67	66	96	88	105	74
AAGCTATACCGTATGA	ref_5809_new	0	0	1	1	0	0	3	3	1	1
TCTTCCCTTTGAATTA	alt_5809_new	4	3	3	5	4	2	8	2	2	7
AGGCTTCCGTCTCTGC	alt_5809_new	78	76	83	79	71	70	99	79	106	67
GTTCAAGTAAAGCGTG	alt_5809_new	109	115	109	93	127	91	109	91	105	72
TTTTTTCGTTTCCCGG	alt_5809_new	0	0	0	0	0	0	0	0	0	0
TCAAGCGCGGATCCTT	alt_5809_new	31	23	22	16	30	33	30	30	29	33
TCATAAATGTTACGTT	alt_5809_new	7	10	24	4	6	10	10	9	7	8
TAAGCGTTCACTCTTA	alt_5809_new	31	33	23	26	24	16	23	31	42	27
CCCCGCTGCAGTAGGG	alt_5809_new	0	0	0	0	0	0	0	0	0	0
TTCATTACGTATTAAA	alt_5809_new	179	203	249	201	190	141	192	156	205	136
TTCGTAACCCCAACAG	alt_5809_new	0	0	0	0	0	0	0	0	0	0
TTGATATCAAAGGTCT	alt_5809_new	0	0	0	0	0	0	0	0	0	0
GCAAGTTTTAGGATCA	alt_5809_new	81	78	90	83	80	79	94	83	72	64
TCACATTCCTTCCTAT	alt_5809_new	0	0	0	0	0	0	0	0	0	0
GCCGCCAGCTCGGCCT	alt_5809_new	0	0	0	0	0	0	0	0	0	0
AGTCCAATGGATTTCC	alt_5809_new	4	8	9	13	11	5	6	6	10	3
ATATTAATGGCTTCGT	alt_5809_new	5	7	8	6	6	7	4	9	1	3
TTTGCTGGCAATCTAG	alt_5809_new	0	0	0	0	0	0	0	0	0	0
GGCCGCGTTTTCCATC	alt_5809_new	82	67	75	102	73	72	78	76	89	59
TGGCTCTTGAGCCCTA	alt_5809_new	18	39	31	24	42	36	30	23	39	50
ACTTGGCGCTATCTCT	ref_5809_new	89	51	87	61	71	84	74	64	74	63
CCATGGGTCTCCTATT	alt_5809_new	15	22	23	12	20	6	29	13	24	14
ATGTGAGAGTCTTCGA	alt_5809_new	0	0	0	0	0	1	1	0	1	0
GCTTTGTTTCAGTTAT	alt_5809_new	25	30	34	19	30	14	25	24	26	20
CTGGTAGGGGTCTTTG	alt_5809_new	20	24	31	34	33	21	33	21	23	28
GCGTTCCAAACCCTTT	alt_5809_new	11	19	14	12	11	11	10	8	16	4
TGCTTAACGTACATAG	alt_5809_new	3	8	3	8	9	3	3	5	4	4
CTGCCACATAAACGCT	alt_5809_new	40	61	67	52	93	49	73	47	73	53
TAAGGCCCATAGTCTC	alt_5809_new	1	4	2	0	0	0	4	2	1	1
AAGTTCGCGCGATGCA	alt_5809_new	32	45	47	52	47	36	56	37	57	37
ATAATTTTCTGACTGC	alt_5809_new	11	7	22	10	7	16	10	12	14	12
CTTTGTCACGTCAGCG	alt_5809_new	38	41	40	46	44	47	43	32	39	42
GCGTGTAGTCTGGTGC	alt_5809_new	0	0	0	0	0	0	0	0	0	0
ATCTCGCACCAATGTT	alt_5809_new	0	0	0	0	0	0	0	0	0	0
GCATGGAATCTTCCTG	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
ATCCATCTTCTACCTA	ref_3665_fdr	17	15	17	17	22	12	16	5	20	12
AAATAGTAGTTCATAC	ref_3665_fdr	43	45	56	48	59	51	68	39	72	49
TTCAACTGGTTTGAGA	ref_3665_fdr	66	93	91	67	68	57	81	65	104	75
CGCGTCTTTTTGAGAT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCGTTACGGTTAT	ref_3665_fdr	4	3	3	9	5	4	1	0	2	7
TACTATCGCTCCGCTC	ref_3665_fdr	13	26	10	7	15	16	26	10	18	5
TTTTCGGGTTCCGAGT	ref_3665_fdr	12	10	11	12	21	12	18	12	19	9
GGGTGAGGTTTTATGC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
GGACTCAACCGTCACT	ref_3665_fdr	15	10	15	7	16	17	15	13	16	12
TATTGTAAATGGGCAG	ref_3665_fdr	35	61	50	42	47	32	50	46	68	34
CTTTAATAACCAACTG	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TATTTTCTGAGTAGCA	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTGCCCCGTGTTT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
CAAAGACTCTTCAAGA	ref_3665_fdr	7	9	12	17	13	7	17	9	17	8
GAGACACGGGCATCGT	ref_3665_fdr	100	93	101	98	112	75	94	107	96	84
GACAGGCATTAGCTCT	ref_3665_fdr	26	32	31	25	39	22	30	29	30	24
GTTTCTCCGCCCTAGA	ref_3665_fdr	36	37	44	43	41	30	47	35	45	35
CAAGGGATCCGGTCCC	ref_3665_fdr	52	62	45	54	58	64	41	55	59	36
AGTAGTCTCCGGGGCC	ref_3665_fdr	15	12	9	6	13	7	19	8	17	15
CGGTAGTTATTCCTGA	ref_3665_fdr	4	10	12	11	12	12	5	7	5	5
TTTACTCACCCTTTCT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCGCACGCTTAC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAAGCGTCTAATA	ref_3665_fdr	40	51	63	48	47	32	59	40	51	46
AAGATATATTTTATAT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
CTAAAGACGGTGAATC	ref_3665_fdr	21	31	34	36	27	26	24	24	33	19
AACCGGTTAAACATTA	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTGTAGTGATTGTCCT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
ATAGATCAGCAGCTTC	ref_3665_fdr	125	124	173	160	148	116	157	136	160	140
GCGGAACGGTCAGCCG	ref_3665_fdr	15	13	8	12	15	3	14	5	16	9
AGATTGGTAATTTTAT	ref_3665_fdr	1	1	0	1	2	0	2	2	1	0
ACTCGCTAATCTTCGT	ref_3665_fdr	7	6	4	1	5	5	3	2	3	2
CTCCCGAAACGTTTGC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
AAACCATTTTGTTTGA	ref_3665_fdr	105	113	132	121	92	105	100	105	110	98
ATCGTTAACTGACTCG	ref_3665_fdr	3	1	2	3	3	6	3	3	6	2
CGTGCCATGTCTTTGG	ref_3665_fdr	21	32	34	32	41	24	41	32	43	19
AACAGATCATGCGATT	ref_3665_fdr	61	53	61	47	72	62	76	59	77	51
TAAATTGCATATTAAC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGCGGATTTGGAC	ref_3665_fdr	18	21	25	14	16	15	15	17	29	13
GGTGTACTCCCTAGCA	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
ATCATCCTATTTACCA	ref_3665_fdr	20	31	14	23	26	20	41	32	39	16
ATGAATGACAGCCCCC	ref_3665_fdr	8	10	17	14	17	18	16	13	16	11
TCACCGGCCTAGGCCT	ref_3665_fdr	14	28	10	17	27	9	28	8	30	17
GTTTACTGTATCAGCC	ref_3665_fdr	21	26	28	18	19	21	22	13	24	19
CACGTTGATAGGCTTT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TATCAGGGCCACTTCT	ref_3665_fdr	54	58	72	63	58	52	51	45	59	39
CATTATCTAGTTCGGT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTTTACGCTCATCCAC	ref_3665_fdr	4	5	4	5	4	2	6	6	7	1
TGTTCCTTTCGGTAGA	ref_3665_fdr	18	16	26	22	19	15	22	15	26	18
TGTGTAATGGTCATAT	ref_3665_fdr	11	13	11	7	6	12	19	11	11	8
TCTCATTCATCGTGTG	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
CATTCGTCGTATTTAC	ref_3665_fdr	29	33	26	26	25	17	30	18	22	16
CGTCATTACGATCTGA	ref_3665_fdr	32	36	41	28	41	28	29	28	56	30
TAAATTCACGGGCGGT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGTCGCTTCTCAT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGTATCGGACCAC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
CGCCTTCTGCTTTAGC	ref_3665_fdr	38	38	37	49	41	46	48	43	40	36
CTTAGGTTTATTTAGA	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TCCTAATGGAAGGGGA	ref_3665_fdr	51	39	47	46	41	37	48	39	47	39
CGTATGTATGGTTACG	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTCTAACCAAACT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
CTGAAGTTCATGATCC	ref_3665_fdr	3	4	3	3	9	7	4	7	5	3
CGTAAGGAACGTGATC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTATCGCTGCGAG	ref_3665_fdr	16	28	24	23	15	19	26	20	24	12
GAACTGCGCTTGCACA	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
ATTGAGACACGTCCAG	ref_3665_fdr	1	0	0	1	1	0	1	0	2	1
GATTATCGTGCCTGTG	ref_3665_fdr	36	24	33	35	33	28	27	24	45	18
TGTGGCTATATTTTAC	ref_3665_fdr	35	40	49	34	35	32	48	32	59	37
GGGGCTTATTATTAGG	ref_3665_fdr	14	24	16	16	15	19	18	10	14	7
TGACTCTGCTAAATTA	ref_3665_fdr	16	14	15	21	21	20	19	12	21	12
TACTTTTTAAGGGCTT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGGGTCTATACCG	ref_3665_fdr	24	27	22	25	23	15	30	28	24	20
CTCGGTGGAGATTTTC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
TACAGTGCCGAAGCCG	ref_3665_fdr	18	25	36	26	34	15	26	20	26	11
ACATGACTATTAAGTC	ref_3665_fdr	13	7	12	2	9	16	6	11	24	14
AAGATAGATTTTATAT	ref_3665_fdr	18	19	24	24	16	25	13	22	13	15
TTTCCCCGCAAATCTC	ref_3665_fdr	1	11	11	15	11	9	14	6	13	10
TGAGGGTATCGTGTGT	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTCCATATAGCGT	ref_3665_fdr	80	86	117	93	97	66	91	83	90	78
AGGTAAGCAGGTCGGC	ref_3665_fdr	39	46	54	52	40	37	50	46	65	57
TGCATTAACCAGCTCG	ref_3665_fdr	21	18	30	21	21	18	20	13	23	23
TCTACGTGTCGTATTA	ref_3665_fdr	84	106	94	71	96	67	90	73	117	56
CATACCCTTGTCCCAG	ref_3665_fdr	2	3	3	2	5	8	6	6	10	4
AGGACGTAGCTGGGTC	ref_3665_fdr	0	0	0	0	0	0	0	0	0	0
ATATGATTAGTTGGGC	ref_3665_fdr	31	40	47	41	42	25	41	29	43	23
GTCGGGTGTGTCGCTA	ref_3665_fdr	21	38	33	23	44	25	38	27	35	27
AGTGCGCAATTTGACT	ref_2378_reverse	22	38	19	17	25	27	36	20	31	16
CACCGTGAAGAGCTCC	alt_2378_reverse	27	11	25	27	37	27	25	28	34	29
TTTGGTTCTGTCTGCT	ref_2378_reverse	17	28	17	20	22	20	27	22	33	20
TGGCTAAGTTTGATCA	ref_2378_reverse	50	50	46	32	47	35	39	31	49	25
TAGGGTGCTGTCGGTT	ref_2378_reverse	0	0	0	0	0	1	0	0	1	0
ATTAGGAAGAAATCGT	ref_2378_reverse	19	21	27	22	13	17	23	20	20	13
TGCGCTCTGTATAGGT	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
CGATCTGCTTACAGTG	ref_2378_reverse	104	123	107	82	117	88	118	71	149	88
AAATAATTTTGCGATT	ref_2378_reverse	36	26	37	35	33	24	40	23	40	17
AAGTTATTTGCGAGGT	ref_2378_reverse	3	7	9	6	6	5	8	4	8	8
CCATTAAGACAGTGAT	ref_2378_reverse	58	95	54	53	77	61	86	59	101	56
CCTCCTTGCGGGGATA	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
GTTCAGCTGTGATTAG	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
GCATAGGTATTCCTAT	ref_2378_reverse	1	0	1	3	4	2	1	1	4	2
GCGGCGGAGATGCACG	ref_2378_reverse	16	22	21	24	28	25	26	21	30	15
GACTTTCCCCCCTGTA	ref_2378_reverse	11	11	13	9	8	13	22	15	13	13
CAAGCTTTGTGCTTCT	alt_2378_reverse	37	52	44	32	44	19	40	21	59	25
ACATACCGCCGTTTGA	ref_2378_reverse	12	20	7	7	15	8	12	10	16	7
TGACGGCATATTATTG	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTACATCCCTAT	ref_2378_reverse	11	20	6	10	15	5	15	7	16	8
CGAACTTGCCCCCCTT	ref_2378_reverse	43	46	46	58	53	44	69	45	57	45
AAGAACACCTATAATT	ref_2378_reverse	17	30	27	18	35	20	22	20	46	14
AGTGTAGGTATGATTC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTCTCTCCCGCTA	ref_2378_reverse	30	31	39	25	55	28	61	22	46	38
AGGTTGGTGCGTCTGC	ref_2378_reverse	61	104	68	69	103	63	125	53	102	77
TCTCAGGTTTTGGTGT	ref_2378_reverse	66	103	78	64	98	63	96	57	110	65
GCCGTTGAGTCTATTC	ref_2378_reverse	23	41	22	18	34	17	38	17	28	15
CGTAGTGTGTTTTTAA	ref_2378_reverse	3	11	18	8	7	6	15	11	8	3
GCATCCATAGTCTGAC	ref_2378_reverse	10	20	22	9	22	12	18	10	26	12
AACTAAAGATTCCGAA	ref_2378_reverse	17	27	25	18	29	18	9	11	16	15
TGCGTCGCTTTGTTGC	ref_2378_reverse	3	9	5	3	7	4	8	2	13	6
TTTGGGCACAACGGCC	ref_2378_reverse	44	64	71	45	56	51	77	61	80	50
GCGTGGTTATGTTCGT	ref_2378_reverse	28	32	31	22	32	23	37	24	42	29
ATGGATGTTGTAATAG	ref_2378_reverse	2	3	1	4	5	4	0	2	5	1
ATCATGCGCTGCTAAC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAATCGCTGGCAT	ref_2378_reverse	48	55	50	44	59	38	64	40	62	46
CCATTAGTTTTCACCT	ref_2378_reverse	5	2	4	2	7	1	8	3	8	1
CCTTATGGGTTGTTTT	alt_2378_reverse	24	31	27	22	35	28	36	33	48	22
TTCATTCAGAGGATAC	ref_2378_reverse	35	45	59	40	60	33	48	38	54	39
TTGTCAAGCAGGTCTT	alt_2378_reverse	34	36	37	38	19	22	36	18	49	23
GGCCACTATATACGTA	ref_2378_reverse	31	42	28	38	41	33	43	24	39	19
ATTCTGCCACGTGTAC	ref_2378_reverse	77	173	112	97	175	80	179	101	197	94
TTATTCTGAATGTACA	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGATTTGTCATTC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TAAGAACTCGGGCATT	ref_2378_reverse	23	24	32	14	33	22	56	17	39	19
GTCCCGGTCTTTGAAC	ref_2378_reverse	13	60	19	17	66	10	71	7	80	13
TGGGTGGACCTTCTCC	ref_2378_reverse	49	63	77	37	57	54	75	47	49	42
TAAGGTCGGGTGGGTT	ref_2378_reverse	117	191	151	151	198	116	182	115	226	138
CTGTTCGTGTAGCTAG	ref_2378_reverse	10	10	14	6	16	4	11	6	9	5
ATGGGGCCAGCTATCC	ref_2378_reverse	8	13	7	8	12	5	16	11	14	9
TTGAGACTTTGCGTGC	ref_2378_reverse	8	7	13	2	9	2	4	5	7	6
TATCGGGCCGTGTGGA	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCAAAGGCCATGC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
AAACTACCGTGTTTGA	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
CTATCTTTGACGGATA	alt_2378_reverse	75	114	99	86	129	85	124	85	145	90
GAATGCTAACACTTCA	ref_2378_reverse	12	31	26	19	29	14	20	15	31	16
GCGATGGTGCGTCTAC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCCGAGGCTATTT	ref_2378_reverse	59	60	54	37	66	40	61	37	60	38
GCGGTTGACGTGGCAT	ref_2378_reverse	34	28	23	16	27	17	22	12	31	19
ATATCCACCGTGAGAT	ref_2378_reverse	2	6	3	2	1	4	3	3	11	4
GAGTTGCGTAACCATA	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGTGTTAATCACT	ref_2378_reverse	13	19	11	14	10	17	23	11	24	18
TGGGTATTGTTAAGAA	ref_2378_reverse	15	12	13	7	17	17	17	15	20	14
TCGTTGGTGACAATAG	ref_2378_reverse	14	24	16	11	18	18	29	14	26	9
TCAATTGCCAGAGGTT	ref_2378_reverse	37	48	43	25	64	26	45	22	59	34
TTTTCCGTGGCATTCC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGCTACGCCAAAT	ref_2378_reverse	1	3	4	3	5	3	7	1	7	2
AGCCAGATCTTCATAC	ref_2378_reverse	57	107	74	86	117	73	77	81	95	66
TTCTCGATGGTTGGTT	ref_2378_reverse	9	17	16	9	10	11	17	11	24	5
TTTGTTCGGCCCCGCC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
CCGTATACGTAGCGCT	ref_2378_reverse	19	28	16	14	30	19	28	9	43	7
AATTTCCCATCGCAGG	ref_2378_reverse	3	13	10	7	5	13	4	5	8	7
TATACTGGATACGGTC	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTTTCGCGCTCTG	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
GCCCAATCGTGGTGAT	ref_2378_reverse	18	45	10	16	38	17	40	18	30	16
TACGAATTATGATCCT	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
ATATCGTACTAGCTTG	ref_2378_reverse	11	25	24	7	24	22	32	10	20	16
CTCACTTGTGACTTCT	ref_2378_reverse	20	23	26	31	23	26	37	26	29	15
GTCCATGCCGGAGGCA	ref_2378_reverse	252	304	250	218	283	203	317	224	298	189
CATTATCTCAGCGGCC	ref_2378_reverse	21	33	20	21	31	25	21	17	34	25
ATTCTCTTGGACCCAG	ref_2378_reverse	19	27	28	15	30	26	26	25	41	22
CCGAGTTATAGGCCAG	ref_2378_reverse	8	23	17	12	26	8	15	11	23	12
CCCCTGACCCTTTGGC	ref_2378_reverse	8	13	6	0	12	5	8	3	12	3
AATAAAAATCTTCAAA	ref_2378_reverse	4	6	5	5	7	3	10	9	6	5
CAACTTTGCGAGTTGT	ref_2378_reverse	85	147	94	106	137	70	114	87	130	92
CGGAGACATTCGACGC	ref_2378_reverse	41	45	42	35	47	44	55	26	49	46
CAGGTTCTGGCAAACT	ref_2378_reverse	23	29	18	17	38	19	35	17	37	20
TTGGTCTGATCTTCGT	ref_2378_reverse	5	12	15	13	16	14	16	11	12	8
GGCGGAAGCGTCCTCA	ref_2378_reverse	11	19	17	14	22	17	29	13	20	13
CTTGGGCGCGTATTAC	ref_2378_reverse	21	50	32	34	43	27	46	28	49	29
GTCGTCCCTATAGCAT	ref_2378_reverse	31	41	43	27	45	28	50	25	53	30
CGGTGATACCCGAATA	ref_2378_reverse	3	11	4	5	8	2	9	6	8	2
GCGTAATTAGCCCTAT	ref_2378_reverse	3	11	8	3	2	8	11	4	5	4
ATAGTCTGTTAATGTG	ref_2378_reverse	32	45	32	44	43	27	34	31	42	35
GCGGGTGAGATGATCC	ref_2378_reverse	18	24	21	18	25	23	39	20	31	15
CTTGTGCCCGTATATG	ref_2378_reverse	0	0	0	0	0	0	0	0	0	0
TGGCAGGCTCGGGTAG	ref_2378_reverse	14	10	12	7	4	6	10	6	8	9
TGTGACTAGATAAGTA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTTGCAACCCTGTAAA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TGCAGATCTATCAGTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CCGCCAGGTGCTCTTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TCTCCTTGTTCGAAAG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GTCTTAAAGTTGTCCC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GGTTGTACATAGAGGG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
ACCTTACGTTTAGTCG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CGCTGAGTACCAACCT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTCACATACCGTGGTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
AACTCTCCGCATTTGC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TGCTTGCCTGCAGGTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTAGAGAGTGTCATCG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TCCTACTAGGTGGTTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GCTGGATATCTGGTCC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TACCGAATAAATATTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GGTGTGTTTTACTTAA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TCATGAACTGCGTTGC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CTTCTCGATTCCTGGT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGAGTTCGTAGG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
AACAGCGGATTCATGC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CAGCTGATAGGTGAAG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TGCTCCCCCCAAATTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GAGGTATTTTCATGGC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTCTCGTTGGACTACT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TGGAATGTTATCATCT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TGATCCCTCACGTTGT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CTTCTTACATGTTGAA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
ATGCATGGCTCGTGGT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
ACTCTGACCAAGGGAC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CACTTGGTCCAGAGTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GGAGGTAGTATTTATG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CAGACTCTCGTTCTAA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTTTGATTGTATCTCC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
AGGTATTCTGTTAATA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CAAGTTTTCATTTAAT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CATGTTCATTTAGTTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
ATGAATAGTCTTGGCT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTTCGGTATTTTTTTA	alt_458_missing	4	4	3	6	0	1	5	1	3	1
CGGTGGCAACTCAGGA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GGTTCCCGAGCTTCGC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CCTCACTGGCGGCTCC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TGTCGGTATAACGAGT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GTGATCTATTATCCTA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
AACGTACCCTGCGCTA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GAAGTAGCAACTCATG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GGACCGGAATAGCTCA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CCTTCGCGGCTCAAAA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CTGCCGTTATGATTTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CGTTTATCCAAAATCT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CAGGCCAGTTACATTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
AATGTCGGGTCCGTGT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CTAGAAGTGGAAGGTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CAACCAAGTGCTAAAC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
GGGTCTTATGTCCCCC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
AGCGAAGGTGTGGGTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TCACTTTCCTGTAATT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TGCCCTCGAGGCCCCC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
ATCTGCGGTGCAAGTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TGCTCTACGAAAAGTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TCGCATGCCTCCCGAC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CGACGTCCCGCGGCAT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTGGCATAATACGATG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TCTTAGGGGGCCTATT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CTCTGAAGGGAAAATC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTTTAATGGTAGTCCT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTGATGTCTTCCGTGA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CAGTTTAGACTGCGTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTATTAGATGCCTCTT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CAGGCATTTGTTTCTC	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TCGAGGTAAGTGAGTA	alt_458_missing	0	0	0	0	0	0	0	0	0	0
CGTTCCTGATTTTCCT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
AATTACGAAAACGATG	alt_458_missing	0	0	0	0	0	0	0	0	0	0
ATGCATATATAAGGGT	alt_458_missing	0	0	0	0	0	0	0	0	0	0
TTTTTGCCGTTTGCTC	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
GGAATATATAATGAGC	ref_3359_upstream	1	1	1	1	0	1	0	1	1	1
AGTTTGCTCCTGAATC	ref_3359_upstream	3	9	10	7	6	8	3	8	16	8
GTGCCATATGGCAATC	ref_3359_upstream	32	47	57	31	49	31	56	31	56	36
CTTCCTTGTCAAAAGC	ref_3359_upstream	17	27	19	15	35	17	28	23	33	16
TCGTTTATCGTTCGTT	ref_3359_upstream	14	25	29	9	15	11	25	13	20	10
GTACGAATACTTATTA	ref_3359_upstream	3	4	2	2	3	9	5	4	5	4
ATGGATGATTCATTGC	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTAGTTCGTTCAG	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
GGAATGTCCGTCTTAA	ref_3359_upstream	68	120	75	78	109	86	141	86	125	87
GTCTGAATCCTGAGAC	ref_3359_upstream	33	32	34	34	56	28	38	25	41	30
CTGTCTGTTTAGAGCG	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTTTTTGCCCTCG	ref_3359_upstream	17	43	49	31	68	16	37	21	32	38
GTTGATTTTCTAGCTC	ref_3359_upstream	15	19	13	7	24	16	28	14	20	9
ACTTGCAAAAGACTTA	ref_3359_upstream	47	90	51	47	92	55	90	52	107	37
CCTCTCATGCGCCGGC	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCCCCGCCGACTT	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTTAAATCTCCAT	ref_3359_upstream	5	10	8	7	9	3	9	5	7	10
AAATTTGATTTATAGA	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGAGTCGCCGTCC	ref_3359_upstream	55	62	61	47	56	52	60	51	92	49
TTGCTACCCCTGCATA	ref_3359_upstream	5	17	9	12	14	6	22	9	23	7
CCCGGTCTATCCTCGC	ref_3359_upstream	2	6	1	1	2	2	3	3	10	3
GTTAGATGAGCCTAGA	ref_3359_upstream	24	38	32	33	51	25	54	17	41	29
TTTTGCTTCCACTGGC	ref_3359_upstream	13	14	7	12	32	9	12	3	18	8
CTTAATGACAACGGGT	ref_3359_upstream	8	5	4	2	9	3	8	2	10	4
TTTATGTGGGAGGAAC	ref_3359_upstream	5	11	8	7	15	7	8	10	14	10
CCCGCCCCCTTTCGGT	ref_3359_upstream	27	45	19	25	52	26	41	13	43	18
GTCTGGTCGGGTTTAC	ref_3359_upstream	13	18	8	16	14	11	13	21	14	11
CGTCGTTGGGGATTGA	ref_3359_upstream	15	16	27	13	17	10	26	14	23	9
TTGTTCCGCGCGAATT	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTGTTTTTCTCGC	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
ATAACAAATATATTGA	ref_3359_upstream	31	55	56	35	60	36	50	29	48	46
CCTCTCCTTCGGGGTT	ref_3359_upstream	24	34	36	26	39	25	38	21	59	19
GAGCTGGCTCCCTCTG	ref_3359_upstream	3	10	8	6	3	9	5	6	7	7
CTGCAACTTCGGGTTC	ref_3359_upstream	37	51	37	24	47	22	41	25	64	38
CCGTGGCCTTTTTAGT	ref_3359_upstream	25	52	44	31	57	27	69	36	52	22
CTTACTATCGTTTTTC	ref_3359_upstream	11	11	13	16	12	7	10	7	23	7
TATAGTATCGACAGGT	ref_3359_upstream	89	145	121	97	171	126	163	107	177	73
CCACTGGTCTCTCACT	ref_3359_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTTCTCTGAGGTC	ref_3359_upstream	1	5	5	3	7	3	7	6	5	3
TTTTGGCGTTTAAGAT	ref_3359_upstream	69	113	81	64	124	69	128	66	128	78
GACTGCTTTGTAAACC	ref_3359_upstream	37	55	43	38	60	34	78	41	78	33
TAGTCTGATAATGTCG	alt_4222_missing	29	36	24	22	27	16	36	16	42	19
ATGTCTGATGACTACC	alt_4222_missing	32	29	24	33	34	14	28	13	28	16
GGTTATGGACACGCAT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
GTATCCAGAACTACTA	alt_4222_missing	24	39	21	30	41	27	42	17	39	23
AAGCGGGTTTAGCTGT	alt_4222_missing	25	38	36	23	44	32	40	33	43	28
TTAACCTTCAAATACC	alt_4222_missing	11	21	18	16	14	17	22	13	24	8
TACTTTGTACTGTTGA	alt_4222_missing	7	14	9	13	16	13	22	4	10	8
ATCTCGGGGGCGGTAA	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
AGTTAGACATGGTTTT	alt_4222_missing	19	31	10	12	31	13	22	16	27	14
GTTTCCTCATCTCACG	alt_4222_missing	11	10	6	5	12	8	9	10	14	8
AATAGCGTGGCTGTCG	alt_4222_missing	11	13	15	11	14	8	30	7	31	4
TAAGACATCTATCCGG	alt_4222_missing	28	49	27	28	50	32	49	19	40	19
GTTATGTCGGTCCAAT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
TCCGACCAAGTTATAA	alt_4222_missing	39	116	57	45	105	44	85	39	131	38
TCTCCAGCACTGTAAG	alt_4222_missing	5	18	6	4	22	6	21	7	27	7
CACAGCTAGCCGAGCG	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
ACATTTCACTTGTACT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
GGACCTGAATGCAATT	alt_4222_missing	3	9	6	6	9	9	14	5	13	11
CCCCAAGGTCACGAGA	alt_4222_missing	3	4	4	3	1	2	8	5	7	4
GTGCCTTTGACCGCTC	alt_4222_missing	29	57	28	33	68	39	50	35	74	22
TAGCTGTCTGTTCCTT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
CTTGCAACCTTTCTTA	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTCAGTTTTTTA	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
TCTGGTCAAATTTCGT	alt_4222_missing	23	63	37	37	59	47	75	17	52	32
AATTTCCCTTGCTGTC	alt_4222_missing	30	45	48	22	46	27	40	19	28	21
AACCGGAAAATCTTTT	alt_4222_missing	55	84	74	70	114	61	107	62	118	59
AGATCTTACGCATCAT	alt_4222_missing	5	5	3	1	8	2	3	3	8	4
TTCGCTTCGGCTGATC	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
AGCGTGACACATGGTT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
CGGTGGCGGGGTAGGA	alt_4222_missing	13	9	10	6	19	16	15	10	12	7
TTCGCTTTTACCTAGT	alt_4222_missing	38	75	46	39	82	39	75	36	69	24
CTAGATACAAAGTCGG	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
GGTTACCCGTAGACCT	alt_4222_missing	11	30	28	10	29	7	30	16	25	9
GGTCAGGTGGCAACGT	alt_4222_missing	205	355	233	186	384	215	370	203	403	191
TCGTCAAACTTAATCC	ref_4222_missing	39	86	58	43	70	36	89	36	92	31
CATAGTGCTTCGCTCA	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
CAATTGGGCTTGTTAG	alt_4222_missing	6	6	11	5	6	2	5	7	8	4
GACTAAAATTCTCAGA	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
CTATGAGGTCTACGTT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
ATTTTCCGTAATGTCA	alt_4222_missing	7	13	9	12	25	6	21	7	24	6
AGGTCCCAGTTATTGA	ref_4222_missing	45	97	73	45	104	54	92	41	76	36
TCGAAATGTGGTCACT	alt_4222_missing	12	20	19	5	15	14	27	11	23	12
CAGACCTTAGTTCCGC	alt_4222_missing	15	43	19	12	36	22	50	12	49	17
CGTCGTTTCCGCCGGG	ref_4222_missing	59	36	65	65	50	42	54	67	45	33
AGAGCACGGTTTTGGT	alt_4222_missing	6	18	15	7	10	10	19	6	17	10
CCCTAAGGGCTAACGT	alt_4222_missing	6	14	6	3	17	4	26	3	16	11
GTTATTTTGTAGGTGT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
ATCCTGGTGTTCCGAC	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
TGTTTAGCCTGTAGTA	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
TCATGTTCTTACCTCG	alt_4222_missing	2	20	1	1	28	7	39	1	36	1
GGGCTGAATGTGTTTC	alt_4222_missing	6	19	11	9	19	17	12	2	14	7
GTTTGTAAATCATGAG	alt_4222_missing	19	26	20	18	26	17	33	16	28	14
TCGGGGACGATACTTT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
GTAACCTTTTCTGGTG	alt_4222_missing	1	12	1	2	9	0	3	1	9	3
TCGTTCCACCGTCGGA	alt_4222_missing	16	61	22	11	45	17	81	13	61	16
TCCTTTTTGTACCTGC	alt_4222_missing	27	30	20	21	25	18	34	19	19	15
GTTACATGGGTTGTTG	alt_4222_missing	23	44	31	31	51	29	66	18	55	22
AGGATGAGGGACCACA	alt_4222_missing	5	14	3	3	4	2	6	1	6	4
TCAGTCTTTGTGAGTT	alt_4222_missing	8	13	13	6	18	7	12	6	17	4
TCATCTGTGTATCTAA	alt_4222_missing	15	38	23	21	33	15	28	26	35	14
ACGGTCGTTACATTTT	alt_4222_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTTTCACTTGGA	alt_4222_missing	12	50	33	18	50	20	36	19	33	37
CCTACAGGCGCGCTTC	alt_5716_new	21	19	18	21	39	28	31	22	38	22
CGTGTTGAGCCTCTGG	alt_5716_new	48	56	82	60	91	64	84	37	72	30
TCCTCCGTCTTTTGGT	alt_5716_new	36	31	27	20	37	12	32	17	36	21
AAGTGGTCCTTAAAGA	alt_5716_new	33	43	43	31	21	33	48	17	66	21
CTTTCTATTCTCCGGT	alt_5716_new	71	118	92	94	144	82	117	77	124	67
CATTACGATCCCCATG	alt_5716_new	36	43	36	31	53	26	54	41	44	30
GAGCGTAGTCAGTCAT	alt_5716_new	13	16	10	5	13	6	13	11	21	9
TCCACAATCTAGCGTT	alt_5716_new	6	18	13	10	24	11	31	9	20	11
GAATATAGGAACTATG	alt_5716_new	12	19	15	10	13	10	28	24	21	11
CCGCGCGCTCAAATCT	alt_5716_new	0	0	0	0	0	0	0	0	0	0
GGTGTGTAAAGGGCAG	alt_5716_new	18	25	22	12	28	24	26	22	33	13
TGCACCAGTCTTTGAA	alt_5716_new	84	137	66	74	151	56	185	81	152	61
CGCTTCGACGTCTCGC	alt_5716_new	0	0	0	0	0	0	0	0	0	0
CATTAACAGACTTTTC	alt_5716_new	4	20	18	14	21	8	17	6	13	15
TTCGCATGGGTTCCAG	alt_5716_new	8	13	11	13	15	9	10	2	17	10
GAAGTTCAACGAGGCT	alt_5716_new	2	8	4	10	11	7	10	4	8	6
ATCATCCCCCTCCAAT	alt_5716_new	37	43	42	46	67	41	55	31	65	41
CTGGGGGACTGGCCTT	alt_5716_new	9	18	14	16	23	14	16	10	26	9
GTTTCTTAGGTCCTTT	alt_5716_new	28	38	34	15	41	30	31	32	33	34
TATTTCGGGATGGTGA	alt_5716_new	12	17	12	14	19	15	34	11	33	17
TGTCCTTCTTTCTCCA	alt_5716_new	23	23	28	19	27	26	38	16	31	16
CTGCCAATTCGGGGCT	alt_5716_new	10	9	18	7	15	12	10	10	17	3
TGGTGTGCATCCGTCC	alt_5716_new	39	62	63	49	81	43	55	45	84	39
ATCCTTTTCCACGATG	alt_5716_new	27	28	25	24	27	16	31	22	33	22
CTAGGAATGACACGGG	alt_5716_new	11	27	8	21	21	15	23	16	27	17
GGCGGCATAGGATCCT	alt_5716_new	14	21	24	25	25	14	23	20	20	22
TGACCTACAAGTGACA	alt_5716_new	1	6	2	0	3	2	4	0	6	1
CGGCAAGCACACCCTT	alt_5716_new	27	35	29	16	26	18	22	17	26	11
CTGCGGTCATCGATTG	alt_5716_new	36	68	42	43	64	26	89	39	80	31
CTGGCAGCTTTTGTAG	alt_5716_new	0	0	0	0	0	0	0	0	0	0
CTCAGCCGTGAGTCCC	alt_5716_new	0	0	0	0	0	0	0	0	0	0
CTTGCATATTCTCGGC	alt_5716_new	44	60	61	44	79	43	72	37	74	33
GAGTGGCTCCGCCTCG	alt_5716_new	0	0	0	0	0	0	0	0	0	0
CTTTTGGGCCCTTGAC	alt_5716_new	0	0	0	0	0	0	0	0	0	0
GGCTGAGCTGGATTAA	alt_5716_new	22	30	22	20	29	22	33	22	29	14
CTCAGACTTGACCCGT	alt_5716_new	24	28	18	13	31	18	33	16	31	15
GATTTGATGATAAAAA	alt_5716_new	16	18	14	7	11	6	17	8	9	3
TGAAGCTCTTCACCAT	alt_5716_new	12	19	12	26	20	9	23	11	28	6
GTCGTAAGATGTATAT	alt_5716_new	0	0	0	0	0	0	0	0	0	0
TAGTAGTTGACCACGT	alt_5716_new	9	21	10	14	24	14	24	10	23	11
CGGTGTAGCAACTCAT	alt_5716_new	0	0	0	0	0	0	0	0	0	0
TATTGTTCAACCAGCT	alt_5716_new	18	52	35	20	41	17	58	15	43	19
GTTTTGTTTAACTCGT	alt_5716_new	0	0	0	0	0	0	0	0	0	0
TGACCTGGGCATTGGG	alt_5716_new	34	69	49	38	54	46	53	35	51	28
ACGTCGTTTCCTGTTT	alt_5716_new	27	67	36	25	93	25	86	20	98	23
TGAAATCGGTGGTGTA	alt_5716_new	37	44	42	19	59	30	32	26	51	37
ACATAAGCGGACGGGA	alt_5716_new	0	0	0	0	0	0	0	0	0	0
AAAGGTTGTGGCCTCC	alt_5716_new	14	8	10	7	19	9	13	6	14	8
CGAGAGTGTAAATATC	alt_5716_new	5	8	6	7	10	9	13	1	11	8
TCATATAACTGTCCCG	alt_5716_new	13	17	10	13	7	12	25	9	22	17
CCAGTAACTTCTGAAG	alt_5716_new	8	27	14	5	28	4	17	2	24	2
GCGTCCCGAATGCAAT	alt_5716_new	0	2	3	2	3	4	3	0	3	1
TACAAAGAACGGCATG	alt_5716_new	0	0	0	0	0	0	0	0	0	0
TCCGGTTCAAAGAGTC	alt_5716_new	114	228	169	124	223	107	213	129	245	114
GCTTTATACCGTAGAC	ref_4372_upstream	32	85	36	39	83	47	118	41	116	27
GCTACCCCGTTCCGTC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGAGTTGGAGTGT	ref_4372_upstream	11	40	15	11	28	11	27	19	40	17
TTCGTTTCCATTAATG	ref_4372_upstream	22	68	30	29	65	16	60	25	68	30
TGCACTGGCCTAACTT	ref_4372_upstream	9	38	19	29	51	13	69	17	54	15
GCCTTTACACGCCTGT	ref_4372_upstream	7	9	5	3	14	8	12	5	15	6
TAAACTAACCCGCAGT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TCATCCGTGAAACGAT	ref_4372_upstream	10	21	9	6	19	3	16	4	28	7
TCGACTTAGCCGGGGC	ref_4372_upstream	14	47	28	18	44	27	62	19	45	21
ACTTATGTCTGGTCAG	ref_4372_upstream	14	59	36	10	57	23	71	23	56	19
CGCGTGGGGTTTTCAG	ref_4372_upstream	3	10	1	4	2	2	7	4	9	2
CGCATTCTCCTTATGT	ref_4372_upstream	0	8	1	4	4	1	7	0	5	1
CGTAGGTATTTCTTTC	ref_4372_upstream	8	20	4	6	15	6	9	7	13	5
GGCCATGCAGAGCCAC	ref_4372_upstream	16	21	17	9	18	10	17	7	13	14
GCGATTCGTCTACTAT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TGACCTATGCCACACT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TACGGTTGTAGGCACG	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
AGGCATGGGTGTAGAT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTTCTCGAGGTAC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
AGTATTACGTATTTAT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTTGAGTTCTAAT	ref_4372_upstream	38	90	55	42	95	50	96	50	105	40
AGGGATCGCATATTAG	ref_4372_upstream	21	62	30	15	67	20	50	31	57	22
TTTTCCGCGAGGATTG	ref_4372_upstream	14	13	15	9	20	10	19	7	21	6
CGACTAATCGCTACTG	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTGACCGCCGTGC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGGAGATATTCA	ref_4372_upstream	2	3	4	1	6	3	11	0	13	2
AGTTCGCCTTAGATCG	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
AACTAGTTCGAGCATT	ref_4372_upstream	60	154	66	89	157	61	175	48	166	58
GACTCGCGAGTCGTAT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
CTTAATAGCCTAGATT	ref_4372_upstream	2	9	4	1	8	6	23	3	22	0
TCAGTTCCCTGCAGCA	ref_4372_upstream	5	15	6	7	9	4	21	5	10	5
CTGGTTATTTTGGTGG	ref_4372_upstream	7	25	10	3	25	10	27	11	23	5
GGCACGATGCGAGATC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCGCGTGCATGCA	ref_4372_upstream	8	20	8	5	23	9	14	3	8	10
ATCCAGGGTTGTACAA	ref_4372_upstream	1	2	1	3	1	1	2	2	2	1
AGATGCAGCGTTGAGC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTCTTTCCTGAGA	ref_4372_upstream	6	13	2	2	10	2	8	2	21	1
GACAATTCGCTAATGA	ref_4372_upstream	3	4	0	3	8	1	3	8	10	3
AATCGCAATATAGGTT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGAGCGGTCGCTT	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
CCCGAATATATGTTCT	ref_4372_upstream	9	17	6	12	7	9	10	6	13	4
GGTCGTTACACGTTAT	ref_4372_upstream	6	32	16	19	53	15	37	11	51	14
GCTTAGTCCTTACGGT	ref_4372_upstream	18	22	12	11	17	6	27	7	21	12
AATGCCCTCACTATCG	ref_4372_upstream	1	6	0	2	3	2	8	2	9	4
AGTGCTCGTATGGTTA	ref_4372_upstream	14	33	20	13	35	21	40	11	45	9
GAGGTGGGGCAAACCC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTCGTCGAAGTGC	ref_4372_upstream	12	41	14	10	56	6	67	8	45	11
CGGTGAGATTTCGTAT	ref_4372_upstream	1	4	0	1	2	1	4	0	2	0
ATGATGGAAGATCTGC	ref_4372_upstream	13	29	14	15	23	12	28	22	26	17
AGTTTCAATGGTTTTT	ref_4372_upstream	10	36	14	6	35	10	25	11	28	13
TGGTACAACTTGCAAG	ref_4372_upstream	59	173	93	75	192	68	210	76	231	62
GTACAGCAAACGATTT	ref_4372_upstream	9	10	6	8	6	6	11	3	17	2
TACACTGTTTAATTGT	ref_4372_upstream	5	29	4	16	32	8	27	8	18	3
AGTCAGGAATTACCTG	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
ACTAGGTATGTTTCTT	ref_4372_upstream	9	9	11	6	17	5	11	7	17	5
GAGTAGCGTTTGCCGT	ref_4372_upstream	6	19	9	3	17	5	10	5	12	6
GGCCCTCCGGCGGCCT	ref_4372_upstream	6	24	8	8	17	12	19	6	18	5
ATTCCTCGGGAATCTC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTCGCGCAACATC	ref_4372_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTATTTCCTTGGT	ref_4372_upstream	14	22	17	11	31	17	13	7	34	6
GCTTATAGTTGCCGCC	alt_3746_reverse	41	41	45	37	39	40	43	32	59	40
GGACACGCATTACTCG	alt_3746_reverse	74	65	84	60	89	57	83	66	91	57
TTATGGTAGTAAATAA	alt_3746_reverse	141	101	166	138	85	99	85	105	117	95
CGCATTTAGTACATAA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGTCAACGCCCAT	alt_3746_reverse	63	58	63	55	81	91	71	72	89	62
CCCCTCCCGGCTATCT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTATCGTATGCG	alt_3746_reverse	7	13	13	10	17	6	10	8	8	8
ACTTAAAAGGTGGTTA	alt_3746_reverse	41	42	45	42	49	53	51	44	61	27
CTGGGGCTTTGCAGTA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGAACAGTTGCTT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGGTCTTCCCGTA	alt_3746_reverse	144	118	181	138	167	116	134	116	160	92
TCACTCATTAGTGTGC	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CGACTGTCCGTATGGC	alt_3746_reverse	155	178	209	166	171	177	185	178	174	171
ATGAGACGTAGAATCG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CGGCTCAGCGGTGCTT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
ACGCAATGTAAAAACG	alt_3746_reverse	13	18	22	27	18	20	15	11	22	9
TGCATGAATGTTCGGT	alt_3746_reverse	42	38	34	31	42	36	38	38	40	30
TCCCTCTCTACGCTTA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
GGAACCGTGTGCATAC	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTGTACTCATCTACAA	alt_3746_reverse	3	6	4	3	3	3	4	1	9	4
GCTTTACACCACGGTC	alt_3746_reverse	191	192	213	183	177	159	179	168	202	183
CGAGCCAGGAAAACTA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGTTGCGACCACT	alt_3746_reverse	11	17	13	10	11	13	13	11	12	13
ACACCCATTTATTTCA	alt_3746_reverse	7	5	6	4	6	13	12	7	10	8
GGAGATGAGCGGGGTA	alt_3746_reverse	30	25	21	18	8	8	15	19	21	20
GATCAACCGGTACGGA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCGGTTTTTGGTG	alt_3746_reverse	52	67	55	50	48	54	73	50	58	40
CGGTATACTCATCGCA	alt_3746_reverse	77	62	96	53	70	60	64	58	80	50
CTTGGTGCGCCCTATG	alt_3746_reverse	24	29	53	25	20	18	24	25	27	16
TGGTTTGTATCCCGGC	alt_3746_reverse	43	29	42	31	36	37	25	25	31	31
TGGGCTTCTGTGGTTT	alt_3746_reverse	92	94	77	73	112	97	94	87	123	76
ATGAGCATAATCGTCG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATATGGGACAGGGTAC	alt_3746_reverse	60	62	56	64	58	53	45	51	51	57
TTTTCTTACTTAACTA	alt_3746_reverse	0	0	3	0	1	1	3	0	0	0
TATGAGCCCGAATCGC	alt_3746_reverse	23	35	32	37	29	36	33	25	29	22
TGATGCCCAGTACCGT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
AAATCTCATAGTATGG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGTTCTCGGAGTT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CCTACTGGTAGGCGAG	alt_3746_reverse	12	25	20	13	14	15	16	15	25	12
ATAGATTCCCAGTTGC	alt_3746_reverse	37	37	42	43	48	30	50	27	43	34
ACACACTCATAAATGC	alt_3746_reverse	57	49	93	73	83	58	86	61	81	60
CGAAGCTGTTAGCGTA	alt_3746_reverse	11	7	12	13	7	14	11	15	12	13
AGTTTCGTCTTCGCAT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTGCTGTAGTTC	alt_3746_reverse	22	14	8	17	25	12	27	13	30	13
TACTATGACCACTTGA	alt_3746_reverse	41	44	64	40	44	29	41	33	50	39
GTGCTGTCTACGCAGT	alt_3746_reverse	29	24	21	26	31	26	18	17	38	26
CCTTTTCCATCATTCC	alt_3746_reverse	6	12	8	4	7	7	7	4	7	3
CTATTTGCCATTGCAC	alt_3746_reverse	15	14	11	14	19	11	10	12	17	6
CTGTCGAGAAAACGCC	alt_3746_reverse	116	125	145	124	103	124	127	133	137	111
TCCGGGGCTATTTTAC	alt_3746_reverse	16	25	15	16	25	24	37	22	26	12
CCCGCAAATGCCCTAA	alt_3746_reverse	17	14	13	17	13	13	20	23	7	4
TAGAATCGATGGCCGT	alt_3746_reverse	50	47	92	71	67	74	76	40	55	57
CCCCCGTTGAAACGTG	alt_3746_reverse	19	36	33	29	41	29	22	27	41	18
TGGATTCCTCTGTCGC	alt_3746_reverse	44	38	58	57	39	38	65	62	43	50
GTCTGCCCAGTTTGTG	alt_3746_reverse	23	18	23	17	36	25	18	25	25	14
ACCATTTCAACCTCTT	alt_3746_reverse	29	37	45	29	42	23	30	35	48	30
ATCTACGAAGTAATCG	alt_3746_reverse	14	7	6	6	6	7	9	5	8	14
AGTAAAATTACTTACT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTGCCCACACTTT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTTCTCTCTGGG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTGAAACAGCAG	alt_3746_reverse	24	25	16	30	18	20	14	25	17	17
TGGCTTTTATATAGCG	alt_3746_reverse	21	15	22	18	23	18	28	23	23	20
GACCTACTCATACGGG	alt_3746_reverse	4	5	6	5	4	3	4	4	1	0
CTATGCCTACGCTCGA	alt_3746_reverse	18	24	13	16	26	25	30	17	33	16
ACGCGGTGTTTTAATA	alt_3746_reverse	8	8	13	6	4	2	10	9	12	5
TATCGTACGCTTTCAG	alt_3746_reverse	36	43	45	36	38	27	44	29	47	26
ATTCTTATATCGCTAT	alt_3746_reverse	18	10	18	9	18	16	18	20	15	7
ACGGATGGCTTGGAAT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTGGTCTGTTTAG	alt_3746_reverse	25	19	26	19	14	21	18	17	14	18
GCCCTCTAGACCATGT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TAACCTCTCGCATATC	alt_3746_reverse	174	190	220	178	184	140	166	171	198	156
AACGCTTCCGTTCAAG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAAGGTTACGTGT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CCACGCTTTTCTTAGT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTTGGGTTCGCTT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGCCGCCCCGGCC	alt_3746_reverse	102	98	123	110	81	95	105	76	81	68
GGCTTCCCTTCAGACC	alt_3746_reverse	6	4	6	2	4	5	10	3	1	7
GCATAATGATTGCTAG	alt_3746_reverse	0	1	3	1	0	3	0	2	1	0
GAGCATAGAGGCCATC	alt_3746_reverse	14	13	12	7	10	14	8	4	5	7
ATTATTCAACTCAAGG	alt_3746_reverse	54	72	59	49	67	51	43	36	48	38
ACAGTATTGTGACCGG	alt_3746_reverse	57	70	53	56	49	52	67	48	56	67
CCAGAACGGCCAGCGG	alt_3746_reverse	4	1	1	4	7	2	1	3	3	2
CAAGCAGGCTCGATAC	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTATGTATGCCAT	alt_3746_reverse	26	21	15	16	12	11	17	14	14	13
AATATTGTTTAGAGCC	alt_3746_reverse	14	21	16	17	8	21	14	21	18	14
CTTCGACCCCTTAACT	alt_3746_reverse	41	38	42	39	41	43	55	37	42	45
TTCTTGAAAGCTTTCA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGAAGAGCGTATC	alt_3746_reverse	1	7	7	2	2	5	6	6	2	5
ATCATCGTTAATAGTT	alt_3746_reverse	11	12	6	12	14	14	9	18	6	12
GCGAGAAAGCCTTCCT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCTCTCCCAACT	alt_3746_reverse	23	34	37	26	43	24	35	39	39	23
ACACAGTCCACCGCTA	alt_3746_reverse	15	12	17	15	17	6	6	10	9	16
CACAAATGTCAAGCAT	alt_3746_reverse	11	28	15	17	13	13	18	8	19	12
TCCCTGCGTGCCTTTT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TCCCATACCTTATTTT	alt_3746_reverse	8	5	5	10	8	4	10	6	9	6
GTAGATCAGTCAGCTG	alt_3746_reverse	95	127	138	103	108	107	131	108	100	95
TTTCAATATGTCGGTA	alt_3746_reverse	36	26	19	26	27	26	24	20	27	24
ACCGCAATCATCCGGT	alt_3746_reverse	78	94	103	105	96	90	108	91	87	92
CGGTTTCTGTGAAACA	alt_3746_reverse	40	91	42	35	106	53	114	41	105	33
CTATTATCGTGCCTGT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCACAGTCTTGGT	alt_3746_reverse	121	133	109	112	138	116	124	103	158	93
TTCCTTCTACAATTGT	alt_3746_reverse	0	1	0	0	0	1	1	0	0	0
TGTTTTTTCTCTGCTG	alt_3746_reverse	44	41	53	44	35	38	33	49	40	38
GAACTCGCGGGTTCTG	alt_3746_reverse	63	56	72	74	57	62	59	50	69	50
ATATCGAACGTTACAG	alt_3746_reverse	4	2	11	2	10	2	10	5	10	10
GGGGTATCTCATCCTG	alt_3746_reverse	21	11	12	10	13	17	20	18	27	15
TCCCTTCACTTCCTCC	alt_3746_reverse	19	15	20	16	15	14	13	11	9	13
GGCGTTATTGTTTTAG	alt_3746_reverse	31	32	31	23	26	26	33	33	30	28
CAGTTACAGGTAGTGG	alt_3746_reverse	1	2	0	0	0	0	0	0	1	0
GTCAACATCTCCAAGC	alt_3746_reverse	20	22	22	29	15	15	15	18	20	24
AGGCTTGTGGCTCTAA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGACACTGTATGTATT	alt_3746_reverse	1	0	0	0	0	1	0	0	1	2
ACCGGCGTTACTAACC	alt_3746_reverse	8	17	10	20	18	8	20	14	20	10
TTGCCAAGAGGCCAGC	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAAGCCTATTATT	alt_3746_reverse	13	20	15	19	14	15	17	13	20	19
TGATGGCAAGGCTTTG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTATACTGCCGCG	alt_3746_reverse	95	71	104	89	68	77	93	68	93	70
GACAGCTATCTGTTCA	alt_3746_reverse	46	48	28	35	41	33	50	27	60	28
CTACTAATATTCGGAT	alt_3746_reverse	3	11	8	12	10	11	7	11	6	5
GGCGTTGAGATTCTCG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CCGGCGTCGCTTTTTA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGTAGGGAATATG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
AATGTCTAAGGGATAC	alt_3746_reverse	58	31	39	36	36	32	50	35	42	31
ATTAGGGACCAGATTG	alt_3746_reverse	33	50	57	30	46	33	49	45	56	32
TTCGGTCGTACCTCTA	alt_3746_reverse	38	45	59	34	39	37	44	28	51	43
CATCGAACTCGTGCTT	alt_3746_reverse	14	16	17	19	28	18	27	22	18	18
ACACCCTCGTCCTATT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGCATCGCTTATA	alt_3746_reverse	102	124	117	90	100	92	139	79	118	102
TGGGCCACGGGAGTTC	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCATTTGTGGAAA	alt_3746_reverse	30	43	53	43	44	20	35	31	49	32
TGAACTCGTTCGGCAC	alt_3746_reverse	25	31	31	28	38	18	21	21	31	22
TATTTGTGTGGTCATA	alt_3746_reverse	1	0	1	0	2	1	1	2	0	1
CAGTGGTTAGACCTTG	alt_3746_reverse	1	1	5	0	1	0	4	0	2	2
GGCTAGATCATACCGG	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTTAAGAGATGCCCTT	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
CTATGTGGTTCGCCAC	alt_3746_reverse	15	21	25	19	17	15	22	26	16	20
CTCATCCTGTAGTTCT	alt_3746_reverse	32	33	35	30	38	36	20	29	33	33
GCGTTCGTAGCCTTAA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
ATACGTGCAAGATGCT	alt_3746_reverse	33	34	45	29	32	26	55	20	36	33
TCACTGTAACCGTCAA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TATTCAAAAAATAAGT	alt_3746_reverse	19	28	29	15	9	18	20	26	27	14
TTAACTTTGCTTGGTG	alt_3746_reverse	23	17	21	17	25	17	18	11	18	13
TAGTCCGGTCAGTCAA	alt_3746_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTGGCGTGTTCGC	alt_3746_reverse	123	129	169	141	128	146	148	137	168	145
TAACTGTCTTTCCGTT	alt_3746_reverse	20	30	22	18	23	16	26	22	33	18
CTCATCCTCTTCCGTA	alt_3746_reverse	15	7	8	16	7	9	12	10	9	14
TGTGGAATGGTTTTCC	alt_3746_reverse	58	51	55	54	59	47	63	49	47	48
GCCCACCTGTGGGTTT	alt_3746_reverse	55	53	61	50	58	50	89	39	62	46
CCTCAAGGTGAACTCC	alt_3746_reverse	17	16	21	16	30	12	30	12	19	19
GTCTGCATCCAATCGA	alt_5669_new	39	28	33	25	37	22	36	21	35	32
TATAATCACGTCGTGG	alt_5669_new	9	10	4	9	7	5	11	7	9	5
ATATCGTGTCCCTACT	alt_5669_new	27	33	31	27	39	31	48	35	40	39
CTTATCAAACACTGTC	alt_5669_new	41	50	52	50	63	58	47	53	59	45
GAGTAGGTTGGGTTCT	alt_5669_new	22	31	26	18	41	18	21	22	28	20
ATCATCTCGTTATATC	ref_5669_new	161	147	189	121	128	151	156	149	135	109
CAGCACTGGACGCCAC	alt_5669_new	66	66	78	45	80	50	60	65	48	46
TTGCGCTTTAACGTAC	alt_5669_new	0	0	0	0	0	0	0	0	0	0
AATCTGTCAAAGTCGG	alt_5669_new	0	0	0	0	0	0	0	0	0	0
GTGGGTGATATCTGAT	alt_5669_new	11	3	9	5	7	9	2	6	4	3
CCGACTCCCGTGACGG	alt_5669_new	20	16	11	12	23	18	33	9	29	14
CTGCTGCCATTCCAAC	alt_5669_new	31	34	48	44	36	32	32	41	33	45
GGTAAACATTGTCCTA	alt_5669_new	0	0	0	0	0	0	0	0	0	0
GCCACACTATAGATTT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TTTTAGGCCGTAACTG	alt_5669_new	11	19	13	1	12	8	15	15	19	7
ATTTTCATGTTTACAT	alt_5669_new	2	2	4	5	5	6	6	3	3	3
TTAGATATGACGCGGG	alt_5669_new	38	45	53	53	49	30	42	37	54	36
CTGCCGTTGACTTTGG	alt_5669_new	94	152	131	126	171	104	191	108	174	100
ATTCACTCTCCGTGAC	alt_5669_new	2	9	3	4	13	5	5	3	7	4
TGACATAAACGATCAT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TCACGTGATCTCCGGT	alt_5669_new	20	16	20	13	10	42	16	22	13	22
GTCTAATCACCCGCTA	alt_5669_new	0	0	0	0	0	0	0	0	0	0
CGGCTGCTTCGTATCA	alt_5669_new	104	87	118	101	84	95	98	92	88	104
CCTGCCTTTTAAGCAC	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TAATTTTCTTTTAGGT	alt_5669_new	14	13	18	15	25	12	16	21	25	11
GCCGGTAGCTTTGGTT	alt_5669_new	97	133	124	111	145	95	123	120	134	96
TTTTCGGTGTAAGACA	alt_5669_new	36	43	66	43	54	67	60	38	57	48
TGCCATGGAGTCCTAA	alt_5669_new	201	212	264	222	214	200	187	205	179	167
GAGTGGTAGTCAGTTA	alt_5669_new	12	9	10	12	6	10	9	6	18	11
GGTAAGCGAACAGCCG	ref_5669_new	89	86	103	101	81	80	105	82	99	83
CCCGGGCTTACATTAT	alt_5669_new	66	48	63	62	57	58	69	54	66	38
GCGGACATCGTAGCTG	alt_5669_new	8	2	5	4	4	2	8	2	9	7
ACATACCTTTGCTTTG	alt_5669_new	0	0	0	0	0	0	0	0	0	0
CAGAGTTGTCCGGTCA	alt_5669_new	20	26	25	22	26	16	19	39	20	22
GTGACTTACACAGTAA	alt_5669_new	26	41	18	21	32	22	32	18	38	15
GGATCCCGAGGTTCAC	alt_5669_new	8	19	10	13	8	7	15	15	16	11
GCACACATTGGGGCCT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
CTTTGTGGTTGTTCAT	alt_5669_new	15	20	36	29	24	17	16	19	19	18
TTGTAAAGTCAAGATT	alt_5669_new	57	63	61	54	66	61	77	45	96	63
GCCTACTGAAACATCT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TCGTCGGTTGCCATGT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
GGGTGGCGCGAGCATG	alt_5669_new	16	14	12	12	16	8	12	14	10	12
AGAGACTTCACAGTCC	alt_5669_new	12	21	15	19	13	17	12	17	17	12
CGCGATGTTCTTGTCA	alt_5669_new	7	10	16	13	5	7	14	12	15	7
TCCGAGGATGATGAGC	alt_5669_new	24	34	22	25	31	27	22	22	29	23
AGAATAGGCACTCCGA	alt_5669_new	101	116	123	86	106	84	120	72	122	91
GCCGCTCAAAAAAGAT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TAGATCCCCCACCTAG	alt_5669_new	14	7	17	11	11	14	12	16	18	14
ATCCATATCTCGCCGG	alt_5669_new	29	36	33	32	30	32	48	21	37	37
AGGTTCCTGGGGAAAC	alt_5669_new	18	42	33	33	55	30	43	31	44	27
TTGAATATGAGAGTTT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
CAGATGTGGATGCATT	alt_5669_new	21	19	29	20	20	21	16	25	24	11
CCCGTTGTGGTTCCTA	alt_5669_new	0	0	0	0	0	0	0	0	0	0
CTTATGAAGCAATTTC	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TAAATTGTCGTCCCGA	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TCGCTCGCTTGGAAAT	alt_5669_new	176	160	182	165	191	164	206	146	217	183
AGCGTTGTCGGAGGTA	alt_5669_new	0	0	0	0	0	0	0	0	0	0
ATACATTGCTCCTTAC	alt_5669_new	211	221	223	182	194	181	250	182	256	175
AAAGTACGTCGTCGGC	alt_5669_new	21	39	31	38	21	25	25	35	37	19
ATTGAGGATTGGATTG	alt_5669_new	57	62	61	41	55	52	71	40	69	53
TGTGCCGACCCCCTAG	alt_5669_new	11	16	15	19	15	12	8	14	22	8
TAAAAGAAAATGTGTT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
ACCATATACTGTACTC	alt_5669_new	1	8	3	6	3	4	0	0	1	3
ATATACGAAGATTTTT	alt_5669_new	45	57	49	52	51	37	67	49	62	45
CGGAATGCTGTTTGCT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TCTATCTCGTCCCACG	alt_5669_new	56	55	66	69	68	59	68	58	65	51
CGTCATCGGTAAGCTC	alt_5669_new	9	12	16	13	27	15	20	13	22	15
CCTGGTCTTCAACGGG	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TAGATACACACGACCG	alt_5669_new	1	3	4	2	4	4	2	5	4	5
TAAAGGTCGTCACCGG	alt_5669_new	0	0	0	0	0	0	0	0	0	0
CACTCTGAAGCTTGAG	alt_5669_new	9	9	21	12	16	10	11	12	9	7
TTAGGGTTAGCCGATT	alt_5669_new	13	24	27	25	23	42	44	20	25	21
ACCCATTTCTCCCACC	ref_5669_new	85	115	81	85	91	66	88	84	82	75
GTGGACCGTTATCTTG	alt_5669_new	1	8	9	4	6	3	7	4	8	3
CCATGGAATTCACAGT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TGACGTTGGCTCATAC	alt_5669_new	32	38	40	35	41	23	43	21	29	25
TTTGTCCTACGGTTGG	alt_5669_new	0	0	0	0	0	0	0	0	0	0
CCGCAGAACGGGGCAC	alt_5669_new	28	41	29	18	48	19	42	31	46	34
CGGGGGTGCTACTGGG	alt_5669_new	23	29	30	39	32	19	39	21	39	20
GGGTGCCTTCTCCCGT	alt_5669_new	20	8	12	14	16	13	11	8	18	14
AGAAATCACAATCGCG	alt_5669_new	50	52	71	64	55	57	52	50	50	57
TGGATTATTGAACTTA	alt_5669_new	87	86	90	77	95	69	112	83	97	76
TTATGCCCTGCCCCCA	alt_5669_new	13	11	16	13	7	3	8	9	8	10
ATACGTACAATATACC	alt_5669_new	79	110	124	61	119	85	101	72	110	68
GGCATCGATAGCTATA	alt_5669_new	48	43	49	36	33	29	33	37	39	25
TCCCGCGACTCATTTT	alt_5669_new	15	23	13	20	42	10	33	18	28	12
CTCTTGTCACTTCGGT	alt_5669_new	150	189	205	183	173	165	157	131	181	119
GCTCTTGCATGGAGCA	alt_5669_new	35	41	60	34	35	33	42	38	47	21
CAGATATATGTATTGA	alt_5669_new	98	103	126	104	99	128	122	82	119	93
TACCTAGTTGCTTCAG	alt_5669_new	31	31	50	36	27	26	17	27	32	31
TTACCAACGGAATCGC	alt_5669_new	64	45	97	81	68	53	68	72	78	76
TTGGGTCGGCTCCGTA	alt_5669_new	68	61	65	54	57	66	52	59	63	46
TCCGCCTATGCATGTT	alt_5669_new	0	0	0	0	0	0	0	0	0	0
TTCTACAGGTGTCTCG	alt_5680_new	42	87	66	35	91	44	71	43	84	34
GTAAAATATGTACTGC	alt_5680_new	13	38	13	15	28	17	45	14	38	16
TCGTTCTGGACCCCCG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TGTTTGGTAGCCATTC	alt_5680_new	2	10	6	7	8	3	15	2	8	1
ACAGCCCAGGACTTGG	alt_5680_new	14	59	20	35	50	18	64	21	61	10
TCAGCCCGCGTTCTCG	alt_5680_new	7	28	16	9	36	13	12	6	13	6
GTGGCGGATTTTTGCG	alt_5680_new	37	41	28	17	58	31	56	23	33	21
TATGCGTAGAATTTTC	alt_5680_new	26	40	27	25	55	22	46	18	39	20
TACGTCCGCTTTTTGG	alt_5680_new	35	53	63	49	71	26	60	35	70	35
TTTCATCCTGTGTCAT	alt_5680_new	0	0	0	0	0	0	0	0	0	0
AGGGTGCAACCGTATC	alt_5680_new	0	0	0	0	0	0	0	0	0	0
AGCGTCTTGTGCCCTC	alt_5680_new	8	35	14	9	27	3	34	6	46	9
TTTACTTTGCTTGGTG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TGGTGAATGCCGCTAA	alt_5680_new	3	12	5	3	12	7	10	6	21	5
TTGCTCATTCACCTTC	alt_5680_new	4	3	6	4	3	2	3	3	3	3
TAGAAATGCGCTCATT	alt_5680_new	35	63	41	29	57	27	49	20	48	27
GGCTGTAAATTGGCTT	alt_5680_new	0	0	0	0	0	0	0	0	0	0
AGTAGGGACTCGTTTA	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TGCCAATTGTTTTTTG	alt_5680_new	2	9	11	8	12	2	15	4	14	5
CGATGACAGAGGTTTT	alt_5680_new	42	72	49	43	76	42	82	29	85	40
AAGGCTCTCCAAAAAA	alt_5680_new	6	10	5	1	11	4	11	5	10	8
CTTCTGAGAAGTGGTA	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TATGTCGGCCGGGGTT	alt_5680_new	61	131	91	77	122	71	138	56	139	73
GCCAATGGATGCATTA	alt_5680_new	16	19	9	11	16	9	15	9	14	4
CTGAGAATATCCACGT	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CTCAGTACGCGATTGC	alt_5680_new	0	0	0	0	0	0	0	0	0	0
GCACATCTACAACGGT	alt_5680_new	5	5	3	8	6	6	13	9	13	4
TAGATTCATCGTAGTG	alt_5680_new	7	24	16	7	13	5	23	9	15	6
TTACGCTGTCATGTTC	alt_5680_new	12	21	13	7	25	6	25	7	20	3
GCCGTGCCGTTAAACA	alt_5680_new	71	183	101	101	181	92	198	97	204	76
TTGCAGCGTTTAGATT	alt_5680_new	0	0	0	0	0	0	0	0	0	0
ATATCATCGCATTATG	alt_5680_new	9	16	10	10	24	9	27	14	26	17
TAGTGATGTTTCTGTC	alt_5680_new	3	3	5	2	0	2	1	1	3	2
GCTACGCATATAGTGT	alt_5680_new	24	24	21	24	42	15	38	13	38	19
AAAGCTGCAGATAGCC	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TATATCTGGTGTGCTG	alt_5680_new	14	31	16	7	27	15	12	20	27	7
ATCAGTAACAACTCTT	alt_5680_new	9	3	6	5	2	6	5	4	4	13
GGCCCTAGGGTGCATT	alt_5680_new	7	7	6	4	5	4	9	3	14	2
TAGTTCTTCCGCCTAG	alt_5680_new	190	322	221	206	330	160	333	158	340	187
TATCCGTTAGGCGAGT	alt_5680_new	32	65	36	32	76	34	63	29	99	37
GCAATCCCGATACCTA	alt_5680_new	9	21	5	9	26	8	16	11	6	5
GTATCATATATCGAAC	alt_5680_new	149	305	185	161	348	182	356	137	364	156
TTTACGTCTGTATAAT	alt_5680_new	15	36	17	13	28	16	31	14	35	13
TCAGTGTCGCTCCACT	alt_5680_new	6	11	1	3	13	3	13	4	10	7
ATCTGATCCGTAAATA	alt_5680_new	2	11	9	5	2	1	3	2	8	2
ATCGTTAATACTCAGT	alt_5680_new	29	60	39	36	66	42	71	29	66	28
CCATGCATGATTTATT	alt_5680_new	12	32	17	20	43	19	33	17	34	17
GCGCTGAAGTGACTCG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
AATCCTTTAGAGAAGA	alt_5680_new	28	33	36	19	58	32	41	35	46	28
TGACTCGATTTAGGTG	alt_5680_new	30	69	53	37	69	41	69	33	74	30
CTGCTATGGAATTACT	alt_5680_new	29	37	24	27	35	17	60	25	41	19
CGAGGGCACAAGCCTT	alt_5680_new	19	54	28	23	67	12	48	31	67	20
ATCGTTGTCCCGAGTC	alt_5680_new	3	17	11	7	14	4	29	9	32	12
CCGGTTGAAAATAGGG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
GCATTAGGTCAGGGTA	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TAATATAGCATGATTC	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TCAAACCGACTCGGTG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
ATGTATGATATTTTAG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CGGCAACACCCCTCGT	alt_5680_new	41	54	44	38	73	35	63	35	92	45
AGATCTGTCGTGTTTT	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TGCTCAGTTATTTGTG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CGCTGTGTACTGCTTT	alt_5680_new	11	8	7	8	19	5	8	6	17	11
TTTTTTGGGTTGCGCA	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TCAGTAATTTATTTCC	alt_5680_new	2	1	1	4	7	3	6	1	5	4
GTGTCAGGCCTTTGGA	alt_5680_new	2	3	4	0	2	2	5	3	8	0
CCCTAGTGCAAAGCCG	alt_5680_new	39	75	57	43	79	26	67	38	67	40
AACAACCCGACGTGAG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
GAAGATGTCGTTCTGT	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CTGCGTGTCAGCTCTC	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CATGCTAAGAGAGGAT	alt_5680_new	24	31	17	20	31	18	26	10	33	12
TCCTGGTAGAACCTGA	alt_5680_new	16	78	19	15	69	15	68	13	67	24
CAGCAAATCGTGAAGG	alt_5680_new	51	71	35	34	78	46	62	44	65	28
CCGCTGAGGGTTCTTC	alt_5680_new	13	38	13	23	33	22	41	17	44	10
CAATTTTAACTTCCGC	alt_5680_new	14	33	19	16	24	6	36	22	24	6
TATCATGATGTACCTT	alt_5680_new	26	38	27	17	36	23	34	23	23	18
GATAGTATAAAGAGTA	alt_5680_new	40	49	29	35	58	32	50	20	50	23
GAGTCAGTCTATGGTA	alt_5680_new	3	8	3	6	13	2	10	6	12	2
CCGTTTCATGCATAAG	alt_5680_new	18	34	15	22	38	14	49	11	43	14
GGCGCTTCGACCCCAC	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TGCAAGTCAGTATGCG	alt_5680_new	8	11	12	13	14	19	33	11	26	8
CGCAGCCCCGAAGTCG	alt_5680_new	28	47	41	43	56	23	76	28	52	23
TTTGCGTCGTTTGTCT	alt_5680_new	26	43	41	30	32	32	43	25	50	20
TTGTGGAGGCGTGACC	alt_5680_new	7	10	9	12	16	7	21	2	21	3
GCACGTGTGGTCTACT	alt_5680_new	39	64	32	35	71	35	70	23	74	24
TGAAGGCGCTGCCCTC	alt_5680_new	26	41	28	24	42	18	37	22	51	24
TATAAATCCTGATTCG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TTAGGGCACGTGGTGC	alt_5680_new	13	18	12	7	12	4	15	8	21	7
AGCCGTCTATTTGCGG	alt_5680_new	8	30	12	9	12	11	28	7	25	10
TGAGTTACCTGCAGTT	alt_5680_new	21	48	31	16	58	19	60	15	60	21
GGGCTAGGGCTCTTGC	alt_5680_new	8	24	21	18	24	7	28	11	25	18
TCCCTTCCAGTTCTTT	alt_5680_new	6	23	11	15	31	4	41	13	29	8
AATCCTGGAGGAGCAG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CTGAACCGGATTGCCC	alt_5680_new	57	81	58	55	102	44	95	48	97	36
TAGTGTTTTATCCTGT	alt_5680_new	2	7	4	4	12	5	6	9	7	1
ACACTGCCTGCTCCAT	alt_5680_new	68	151	87	81	135	53	160	70	160	65
TATTTGAATTATAGGC	alt_5680_new	76	100	59	50	125	58	117	51	113	47
GCTTGCCTCATGATAT	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TAAGACATGTCCTTGG	alt_5680_new	21	53	30	24	37	15	57	11	54	15
CAGTCTTCTGCTTGTT	alt_5680_new	4	2	4	2	4	0	7	2	3	2
ATCTCGCCCTGTGGTC	alt_5680_new	72	179	104	87	183	82	203	75	175	72
CGTCATATTACGGTCA	alt_5680_new	29	52	26	30	57	18	37	25	38	24
AGGCCCCCAATCGGTT	alt_5680_new	4	8	4	12	12	8	4	6	13	9
ATTACTTCTACCTTTC	alt_5680_new	43	66	51	22	76	35	76	23	82	40
AATTTCACGATCGTCG	alt_5680_new	36	62	46	22	81	36	56	46	89	47
TTCTAACTTGTGTTGA	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CCATATGTGTTCCTCT	alt_5680_new	186	289	219	158	355	176	342	161	347	165
AGGGTAAAGTACTCCC	alt_5680_new	0	2	2	0	0	1	2	0	0	0
CCAGGCGTAATTTTAG	alt_5680_new	0	15	3	2	18	3	34	2	26	1
GATGTATGCGCTTTTG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CTCCTCATAAGTGAGG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
CAATAGAGGGCTGTTG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
ATACTCATGCCGGCAT	alt_5680_new	50	67	74	62	85	56	102	51	95	62
ATCACTATTGGTTTCA	alt_5680_new	39	51	44	30	58	41	79	17	73	33
ATTCCTCCGACCCTTC	alt_5680_new	1	26	7	11	17	19	15	9	14	6
AATATCGCCGATTTTC	alt_5680_new	23	41	20	25	29	25	44	9	49	30
GCGGTTATAGACGACC	alt_5680_new	29	71	46	33	59	32	75	35	57	24
ATAAAATCTTACCAGG	alt_5680_new	33	135	35	34	105	26	118	29	114	30
CTCAAGTTGCTACGCG	alt_5680_new	0	0	0	0	0	0	0	0	0	0
TCCTACGGGCAAGAGA	alt_298_fdr	8	4	13	7	6	6	3	5	9	6
GCCTACGCTATCCAGC	alt_298_fdr	28	14	35	29	22	26	14	35	16	32
GGATTCAGGTCGCACC	alt_298_fdr	130	47	127	147	46	102	38	106	41	102
CTGCCCTTCAGCTGCC	alt_298_fdr	9	7	7	7	2	6	3	9	1	5
ATGCTGATAGTCAAAT	alt_298_fdr	15	11	15	11	4	10	6	10	10	6
AATTTGTTGTGGGTCT	alt_298_fdr	35	11	46	36	18	35	17	37	23	45
CTTCAATCCAATTTTT	alt_298_fdr	173	97	222	222	114	156	139	213	118	151
CCCTATGCCGTGCCTT	alt_298_fdr	68	36	103	90	28	67	42	77	38	57
CGCAGCTCATATAGCT	alt_298_fdr	7	4	10	12	6	9	6	7	5	4
GGCAATGGATCTGGTA	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCGTATCAGGGTC	alt_298_fdr	24	12	18	16	7	26	7	35	10	17
CCGAATGGGATCTTTA	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
GTGACGCGCCTCAGGA	alt_298_fdr	59	17	61	72	29	56	26	49	33	66
CCTGCTTACCCCGAAC	alt_298_fdr	19	16	29	23	7	32	18	21	9	20
GCGGGCATGCTCACCG	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
CGATGGGAAGGAGCAT	alt_298_fdr	463	233	572	489	249	459	214	460	245	369
AACTTGAAATGTGATC	alt_298_fdr	3	4	1	9	3	4	1	5	6	7
TATTCTCTAGCGTGAT	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
GAATAAGCGCCCATAC	alt_298_fdr	180	66	200	179	55	155	95	105	89	121
GCCAGAAACTTCCTAT	alt_298_fdr	27	13	30	44	28	25	20	29	28	32
TACCGCGCCTAAGAAA	alt_298_fdr	94	51	94	108	54	75	53	83	74	75
TTTTAAACGATGTCTT	alt_298_fdr	93	38	106	113	53	85	57	100	54	68
GGTGGTAGGTCTCCCA	alt_298_fdr	25	15	35	29	14	30	11	27	9	25
GAGCCTGTAATTCCCA	alt_298_fdr	127	65	185	143	70	116	76	142	83	127
GTTTAAGAGATCGGCG	alt_298_fdr	4	5	13	19	6	11	6	9	9	12
CGGTGGTCTGAGGTTA	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGAGTGACCCCGG	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
CCATTCGGGTTGATCC	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
AAACCAAAGTCATTGT	alt_298_fdr	1	0	1	0	0	0	0	1	0	1
TCCACTTAGAACCTGT	alt_298_fdr	54	32	65	58	25	43	36	50	25	32
TTATTACTCACTCCTC	alt_298_fdr	10	5	2	7	6	8	4	5	7	8
ACCTCCCAGACAACCG	alt_298_fdr	61	48	74	75	43	50	25	56	38	69
TCGAGTGGTATACCCC	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
TACAAGCCCTACCATG	alt_298_fdr	5	8	5	3	5	6	1	7	0	3
GGATATGAACTTACTG	alt_298_fdr	23	11	19	21	14	17	25	21	16	18
AGGTAGTTGTCTTTTC	alt_298_fdr	43	43	54	56	25	62	19	47	28	49
GGAAGATGCTCGGCTG	alt_298_fdr	16	13	36	34	10	28	13	23	9	27
CAATGCTTAATTGGAA	alt_298_fdr	27	11	31	30	11	19	15	24	13	26
GGCGACGATACCGTAG	alt_298_fdr	8	19	13	13	7	12	9	7	8	15
AAAATAGACTGTCGAC	alt_298_fdr	85	50	103	69	29	60	37	75	37	81
GCTAACGTTAACTGTC	alt_298_fdr	273	103	358	327	128	261	119	264	152	270
TTTGCGAGTTTCAGAC	alt_298_fdr	17	13	18	27	4	13	5	22	5	10
GGAAGTAGGATTACAC	alt_298_fdr	40	16	50	20	10	36	15	41	14	32
GGGTAATGTATGTTTT	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
TCCATAATCAGACTCT	alt_298_fdr	32	16	45	23	18	45	11	28	18	26
CCTTAGACAGGGCCAT	alt_298_fdr	20	28	35	43	30	25	56	27	31	26
CGATTCCTCGACGTAA	alt_298_fdr	18	17	36	20	19	28	11	22	16	21
CCGTGCCAATCCTTAT	alt_298_fdr	18	16	35	27	15	29	17	27	19	21
GGCATACGCTTCGTTA	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
AGGAACAGGACATACC	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCTTGTCCCTCGA	alt_298_fdr	20	7	19	28	12	21	17	25	15	23
CATTCACTGCCTACAT	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
GGGTGTACTTTTACCC	alt_298_fdr	196	92	220	215	62	186	79	194	89	138
TACAAGTCTCTTTATT	alt_298_fdr	4	1	3	4	1	2	0	4	3	3
TGTTCCGTGCGGTCAC	alt_298_fdr	67	32	97	72	46	64	38	57	30	78
GGAGTAAACCGCTCGC	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
CTACACTGATTGGTCC	alt_298_fdr	1	3	4	3	0	1	4	2	2	1
CCAGTATTGATACCTG	alt_298_fdr	61	60	84	65	51	58	65	62	49	54
TGATTTCCTAGATCGG	alt_298_fdr	251	125	296	280	104	235	130	184	149	214
ATTGTTTATTCTACCG	alt_298_fdr	113	65	152	123	81	93	76	102	78	120
AAGAACCTACGCAACC	alt_298_fdr	8	2	13	9	10	7	1	10	4	5
TTAACATGTATGGTCT	alt_298_fdr	106	62	149	120	55	117	60	88	64	100
GCACCTCTCAATTGAC	alt_298_fdr	84	57	110	99	40	97	46	81	58	104
TTCCCTCGATACACCC	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
GCGCAGGTTGCCAAAT	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
TGTATGGCCAGTCTCC	alt_298_fdr	12	2	7	7	11	11	7	8	5	11
CAAGTGGCGGGCCCAA	alt_298_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCCCAGGATTCCG	alt_298_fdr	27	14	34	26	15	24	18	34	19	26
CCGTATCGCGGATTCT	alt_298_fdr	43	23	66	52	37	49	43	44	34	41
AATACCTCGGTATCGC	alt_298_fdr	15	16	19	24	13	15	21	20	8	11
ATGGAGAATTCAGTGG	alt_298_fdr	19	5	20	22	14	23	14	15	14	17
CAGCGAATCAAAGTAC	alt_298_fdr	15	21	39	37	22	26	28	31	16	17
TAGGCTTTGGAAAGAG	alt_298_fdr	67	35	93	63	22	52	39	56	31	62
GAGTTTATAGAGTCCT	alt_298_fdr	14	21	30	28	15	23	13	16	8	36
ATGTCGCCAATGTACG	alt_298_fdr	210	91	217	202	86	151	99	172	122	135
AGTCTTAGCCCTCACG	ref_5918_new	0	0	0	0	0	0	0	0	0	0
CAATTAACCATAAAGT	ref_5918_new	0	0	0	0	0	0	0	0	0	0
CTGAGTCCCAAAGTTA	ref_5918_new	32	26	18	18	22	17	28	15	42	12
TGTACATGGTAGGTGC	ref_5918_new	11	16	18	17	17	15	15	15	10	12
TTATTCGCTTCTGGTC	ref_5918_new	14	11	13	8	12	4	8	5	13	7
CCAAGCGGTAGTAAGG	ref_5918_new	16	20	18	15	15	11	28	8	27	10
CTCTTTAGATAGTGTT	ref_5918_new	0	0	0	0	0	0	0	0	0	0
GTTAAACGCATTTGTT	ref_5918_new	42	98	58	72	71	59	79	52	74	61
GGTCGCGGGTAGAAGA	ref_5918_new	15	20	12	16	10	9	11	7	10	12
CTGGTAAGTTACAGTC	ref_5918_new	20	36	42	16	24	29	30	16	44	20
CTATGCGGTGCCAATC	ref_5918_new	35	37	37	29	59	21	29	29	35	32
CCTTCACTTTCTGTGT	ref_5918_new	0	0	0	0	0	0	0	0	0	0
AACGGTCCGTATTTGA	ref_5918_new	42	60	48	65	73	41	51	40	61	43
ATTACTGCTCGTCGCC	ref_5918_new	25	44	29	21	35	28	42	18	35	16
AATACGCGCAGTCGTT	ref_5918_new	0	0	0	0	0	0	0	0	0	0
CCTCCCGGCCCGTCGT	ref_5918_new	9	21	11	12	20	5	25	6	26	12
GTTTACACCGTTCCTG	ref_5918_new	39	62	37	55	45	52	51	32	47	36
GGTTAACTCCCCTCCT	ref_5918_new	2	16	7	8	16	3	14	8	19	5
GCTTGGGGATCGTGTG	ref_5918_new	8	14	9	14	22	5	9	9	13	7
CACACTAAAGTGTAGA	ref_5918_new	11	15	5	3	5	5	11	5	14	10
GGTTGAACTTCGTTTC	alt_5918_new	22	25	21	19	26	27	30	17	39	14
GAATCTGTGTGGGCCT	ref_5918_new	88	116	88	83	114	68	126	65	105	55
TTGCAGTGCAATTCAC	alt_5918_new	4	4	6	1	8	6	9	4	12	5
TGAATAATGTTTTGGT	ref_5918_new	10	28	13	18	22	19	23	13	21	17
GCTAACTTTTTTACAT	ref_5918_new	72	139	95	87	103	88	125	69	108	62
TTGGGCAGATAGGGTG	ref_5918_new	8	10	14	12	11	6	13	7	16	9
CAGAGTCAGGTTTGTT	ref_5918_new	24	28	32	29	20	18	27	23	29	16
TCCACCCATCACTAGA	ref_5918_new	0	0	0	0	0	0	0	0	0	0
CTGTCGTGAAGGACCT	ref_5918_new	30	28	30	23	38	25	43	25	35	31
TGTGGTCGGTTTTGCG	ref_5918_new	0	0	0	0	0	0	0	0	0	0
TATTAACGCAGTTACC	ref_5918_new	75	101	85	84	105	72	95	63	107	62
CGTTCTTGGGGCGCGA	ref_5918_new	27	46	49	42	43	42	34	21	43	25
CGTTGGCATCTGAGTG	ref_5918_new	2	2	3	6	1	1	8	0	1	4
GAACGGTTAATTTATC	ref_5918_new	13	13	19	16	17	21	17	14	18	8
ATTAGGCGTATACGTC	ref_5918_new	57	54	58	60	51	36	69	44	61	51
GCACATGGCCTAGAAT	ref_5918_new	0	0	1	1	2	1	1	0	4	1
AATTTTAACACGCCTC	ref_5918_new	11	19	22	24	31	17	28	16	21	16
CATCTGCAGACATACC	ref_5918_new	0	0	0	0	0	0	0	0	0	0
TGGACATATTATCGGG	ref_5918_new	8	24	8	9	15	7	15	12	11	9
TTTGCGTTGAGCTAAC	ref_5918_new	84	100	82	74	94	68	101	55	116	82
GCTCTGTCAGTGGGGT	ref_5918_new	257	356	343	268	316	214	389	248	341	246
AATGGTCCGGTATTTG	ref_5918_new	85	90	80	67	82	73	85	77	117	64
TGGGGCCCGTCGAGTC	ref_5918_new	34	27	19	24	34	18	27	16	45	19
GGGAATATTAACATCG	ref_5918_new	26	24	33	20	15	30	27	31	24	18
CTGAAGGCCTTCTGAA	ref_5918_new	1	6	4	3	5	5	2	3	3	3
ATCATGTGAACTTTAT	ref_5918_new	9	14	15	6	15	19	7	7	16	6
AGCCTGATTCAGTATA	ref_5918_new	14	20	10	15	15	9	11	8	17	15
CGCCCGGCAGCTGTTT	ref_5918_new	26	19	18	21	20	16	36	8	27	30
TAGATAACTGCCTCCA	ref_5918_new	0	0	0	0	0	0	0	0	0	0
CTGATCAGTATTCGTA	ref_5684_new	20	18	22	21	16	23	25	15	15	18
ATTTATTAAAAAGATT	ref_5684_new	17	3	12	8	13	12	10	7	8	12
TGACAAGGATCCCACT	ref_5684_new	100	43	87	92	69	71	62	97	77	58
TATTTCTACAGTCCGA	ref_5684_new	9	11	19	7	14	5	13	13	10	9
CGCCGAAACAACTCCC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TTACGTTTCGTAGTAC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TCAATTCTAACCCTCT	ref_5684_new	62	46	83	71	56	73	51	66	55	54
GATGTTTTCATCGCTG	ref_5684_new	16	9	29	25	10	27	16	13	11	20
AAGCCTCAACCTAGAT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GGGCAGCACGCCTACG	ref_5684_new	37	32	47	54	35	46	31	39	31	43
TGTTTGCGACATAATG	ref_5684_new	51	44	68	48	37	47	32	41	51	51
GATCTATTATTTGCGT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TAGCCCCGCTGACTCA	ref_5684_new	85	74	105	79	69	64	78	47	84	84
ATCGTATAGCCTCGAT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GGGTATGTGCTTTGGT	ref_5684_new	1	5	6	6	8	5	4	2	5	4
TAGGCCGTTGATACGA	ref_5684_new	45	30	50	36	45	40	31	34	39	26
GTAAGAGACGGGTGTA	ref_5684_new	110	79	136	118	88	113	112	95	104	95
GTATCTATTCTCTTCA	ref_5684_new	85	47	82	92	61	65	51	75	61	59
TATAAGTGATCTTCGC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
CTGCCTGGCTAGCTTT	ref_5684_new	91	63	74	92	69	68	82	69	82	57
ACGCGTACCTTGCCCA	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TGCCTAAATATTCCTC	ref_5684_new	155	139	229	195	140	167	175	181	173	178
TTATCCTTCTGTTGGC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TCCTCGAAGCAGAGAG	alt_5684_new	48	32	70	54	34	49	35	45	44	47
TCTTGCGCACGGTTCA	ref_5684_new	0	0	0	0	0	0	0	0	0	0
CACGGGTCAGCTACTT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TTTGGTCAGCCAACCT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
AGGACTGGAATCCATT	ref_5684_new	42	39	72	35	24	52	40	36	35	44
CGGTTTCAAATACGTT	ref_5684_new	16	10	11	10	17	11	17	12	12	13
GTTGTACAACCTTTGT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GTGTCTCTGCGTCGAC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TAATAAGTTCCATTCC	ref_5684_new	37	22	34	44	27	42	37	27	44	25
TTCCGTGTATGTCCCT	ref_5684_new	3	8	7	5	7	2	13	7	1	6
TCTCACATAGTATTAT	ref_5684_new	14	12	15	11	13	1	13	3	13	16
TCGCGGCAACTCTGGC	ref_5684_new	8	15	13	7	16	7	13	5	14	20
CGGACAACACAGGATG	ref_5684_new	0	0	0	0	0	0	0	0	0	0
CGTCGGATAAAGTCTG	ref_5684_new	59	41	56	39	41	43	53	42	51	37
GCTTCCTGCACATTGT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TGCTTATACCGCAATG	ref_5684_new	25	26	26	29	39	17	30	17	27	21
GGAACGCTCCCTTACT	ref_5684_new	47	33	46	46	28	43	29	28	41	28
AACTTTTCTACCGACC	ref_5684_new	44	56	51	44	49	52	48	44	55	44
CAGTCCAATCTGTCAA	ref_5684_new	36	45	46	22	40	28	41	28	44	35
TGTCACCCCGCATCTA	ref_5684_new	30	23	28	31	23	22	34	29	25	42
AAGGTAGAGTGCGTCT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TATTTGTCGTATAGGT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GTTTTCCAGTGCGCCA	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GAGGGATTCCAGCGGC	ref_5684_new	25	26	42	28	15	29	22	31	31	38
GAGGCAGATTCATTAT	ref_5684_new	42	46	66	49	39	48	51	36	30	45
AACCCCTGCTACCAAT	ref_5684_new	104	89	122	96	95	96	107	95	111	81
CCTAGGGGCTCGATCG	alt_5684_new	186	129	219	183	106	190	117	176	147	132
CCGTCCTCATGTTAGG	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TCTTTACTGTCTTTAG	ref_5684_new	0	0	0	2	2	1	2	2	1	0
ACTGTTCCTTCTCGGA	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TGACTCCACACCAAAT	ref_5684_new	57	26	58	44	38	38	43	33	34	33
GCGAAGCGAGCTCGGC	ref_5684_new	117	97	166	128	112	124	122	152	142	129
CGCTGAGGGGGGCGTC	ref_5684_new	74	41	78	50	50	72	56	41	82	62
GTCTTTCGATAGAGTT	ref_5684_new	14	16	18	12	17	22	24	20	10	21
ATCCGATTAACCACAG	ref_5684_new	0	0	0	0	0	0	0	0	0	0
ACCTTTGAAAGAGGTT	ref_5684_new	29	25	38	30	34	25	39	18	25	35
CCGACGTTAGTACACT	ref_5684_new	23	39	17	24	48	23	34	24	53	24
GATGACTACTGGAATC	ref_5684_new	132	122	167	150	114	136	108	139	116	102
TATTAAGGGCTTGTTG	ref_5684_new	27	14	26	25	7	10	10	15	14	21
TAGGTCAACTGGACGA	ref_5684_new	18	18	28	26	18	16	20	17	20	25
GTTTTACGAGGTGGGT	ref_5684_new	5	7	8	11	6	8	5	10	5	5
TTCCCGTCGCACCGTA	ref_5684_new	115	87	134	125	100	94	115	100	88	84
GTCGCACTGTAGTTTT	ref_5684_new	1	3	1	1	1	1	3	3	5	1
TAACACGCCATTCACC	ref_5684_new	81	61	118	100	60	74	63	85	53	84
CCTGTGCTGTCCCTGG	ref_5684_new	40	18	34	20	15	24	13	17	16	31
GCCGTCTAAGTCTCGA	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TTATGATTTCGATCTT	ref_5684_new	40	37	52	41	38	54	41	45	37	48
GCAAAACATTATGAGG	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GGCTTGGACGTTAAGT	ref_5684_new	12	8	17	10	12	8	14	9	11	14
GCGCTTTCGACACCTA	ref_5684_new	38	46	63	45	50	57	31	50	53	43
TCTTTGCTAGGTCTGC	ref_5684_new	40	32	30	36	39	43	26	30	27	34
GATCTCTGCTCTTCTT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TGTCTGCACTACGTAT	ref_5684_new	8	9	12	12	4	7	2	5	6	11
TGTGCAGTTTATGATC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GGTTTCAACCTAATTA	ref_5684_new	26	16	31	17	22	23	19	14	21	22
TAACGATGGCTGGTAT	ref_5684_new	7	7	14	12	4	12	8	8	11	11
TACCCGGTCGTGCGCG	ref_5684_new	27	15	27	21	16	16	20	18	20	14
CGGGCTCTCCATCCAT	ref_5684_new	22	14	27	15	7	19	13	27	26	30
AAGTTAGTTCCTTATC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TGTTCTGCATTTGGCT	ref_5684_new	71	85	65	72	71	75	57	61	55	66
TCTCCAGTCCGGGAGT	ref_5684_new	0	0	0	0	0	0	0	0	0	0
CGATGGTGCAACATAC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
GGCAAAGGCGTCGTTA	alt_5684_new	23	10	41	30	15	22	10	22	18	20
CGCCCGGGAGATGGTC	ref_5684_new	4	8	5	12	14	7	7	7	5	3
GCTTGTTTTCACGCTA	ref_5684_new	0	0	0	0	0	0	0	0	0	0
CTATCCTCTCTATCAT	ref_5684_new	17	6	21	16	13	13	10	13	14	15
CCTTAAATTTCATCGT	ref_5684_new	31	44	39	55	40	35	33	43	34	29
TAGAAGACTACAATAA	ref_5684_new	106	95	143	87	104	120	108	91	96	118
AGCGTAGAGACGGCCA	ref_5684_new	160	117	236	181	110	184	123	177	142	177
GGCTGAACGACTTAGT	ref_5684_new	37	33	35	44	18	42	23	34	31	42
CAGTGTGTGCTCTGAA	ref_5684_new	34	26	31	22	28	28	27	33	32	24
CGGTATTTTTTCTAGA	ref_5684_new	0	0	0	0	0	0	0	0	0	0
CTAGTCCAATGTTTCC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TCGGCTGCTGACTTCT	ref_5684_new	9	9	15	25	11	12	7	16	8	12
TACTCTTGCCAGTAGC	ref_5684_new	37	49	37	38	48	23	54	31	51	31
GAACTATAGCGAACAC	ref_5684_new	5	5	0	5	4	1	3	7	4	3
ATTATTCTATGTTGCT	ref_5684_new	24	21	37	23	28	40	23	27	25	28
GTGGATGGAGCTGGGC	ref_5684_new	15	8	16	8	15	7	16	12	13	16
ACCATTTCTCTAGTCT	ref_5684_new	87	80	117	90	92	92	89	92	77	100
CCCTTGGCGAACCCCT	ref_5684_new	59	54	89	44	51	73	54	82	58	64
CTCGACCTGTCCTATG	ref_5684_new	46	102	81	81	101	48	83	66	87	68
CACCCGTACTTATCCT	ref_5684_new	5	18	11	11	20	2	12	9	14	7
CAGTACAAGTATGAGC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TATATATCAATTGCGT	ref_5684_new	25	17	32	23	13	19	17	27	23	29
GTTTCGCCACGTCAAG	ref_5684_new	13	9	17	7	18	7	19	15	18	13
TTGCACGTCGAGCCAA	ref_5684_new	5	18	10	6	12	11	11	4	10	7
CTAGTATACGAAGCAC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TAGCGATAATAGGAGT	ref_5684_new	259	197	292	274	185	243	185	212	196	218
TTCACGCCATATATCG	ref_5684_new	0	0	0	0	0	0	0	0	0	0
ACCATTTTAGACCTTG	ref_5684_new	6	6	18	8	4	3	9	4	13	12
TACGGGACTCGCAGCA	ref_5684_new	26	34	23	26	23	12	25	23	27	27
AAACTTGCCACGGGGC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TCATGTAGTTAGGGCA	ref_5684_new	272	212	368	300	239	292	241	251	242	263
TTATCAAGACGATTGC	ref_5684_new	0	0	0	0	0	0	0	0	0	0
TGTGGGCTTCTAAAAA	ref_5684_new	23	19	31	24	20	15	25	19	21	20
ATGGCTATTGGTCATC	alt_5619_new	16	31	18	14	30	10	36	18	29	9
TGCCTCGATGTACATC	alt_5619_new	60	133	81	84	113	52	122	65	129	53
GCTGTCAGTGTCTGCT	alt_5619_new	0	0	0	0	0	0	0	0	0	0
TTTAGAGTCATTGGTC	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GATCGGGATTCGATCG	alt_5619_new	4	18	6	14	13	12	5	6	22	9
TTTTAATGACCTCACT	alt_5619_new	32	35	48	45	39	40	51	39	54	30
GACGGGAATTTGCGTG	alt_5619_new	6	27	17	12	31	18	40	15	21	15
TACTCGTTCAGCGTTC	alt_5619_new	54	83	60	53	107	62	101	51	108	32
TATTATACTGTCGGCA	alt_5619_new	27	45	32	21	39	17	41	23	41	16
GGCTTGATTAGCTTTT	alt_5619_new	0	0	0	0	0	0	0	0	0	0
ATGACTCACTTGCAGC	alt_5619_new	16	36	12	14	38	5	36	18	33	11
CGGTCCTAATTGATTC	alt_5619_new	10	17	5	8	22	9	17	7	20	7
TCCGGACAGACACTTC	alt_5619_new	0	0	0	0	0	0	0	0	0	0
ACAGTTTGGGCAGCTA	alt_5619_new	21	51	34	18	49	24	47	29	32	9
GGACTTAGAGGGTCCT	alt_5619_new	16	29	32	26	32	25	38	17	48	21
TTTTTTTTCAGAGAGG	alt_5619_new	69	106	95	68	113	57	104	60	109	64
CGCGCTTGGGTATCGT	alt_5619_new	86	149	110	92	145	71	143	65	159	91
GTCGGCTCGGTAACAA	alt_5619_new	20	41	28	26	61	25	37	22	30	16
TTCGGCTAAGTTTACC	alt_5619_new	0	0	0	0	0	0	0	0	0	0
AGTCCTACTTATCTGT	alt_5619_new	8	8	12	5	13	11	8	7	12	7
GATTCGCAGTTACCGT	alt_5619_new	1	2	1	2	8	4	6	3	9	3
ACGGATTAGTCCCCCA	alt_5619_new	3	13	4	6	8	4	15	3	19	10
TAGTTCCGATCTCGTT	alt_5619_new	13	33	28	21	32	26	39	20	31	26
TCACACGTAGGGAACC	alt_5619_new	106	184	125	88	140	94	192	87	166	91
TTTAGCAACTGCGTGT	alt_5619_new	81	160	104	68	128	83	158	74	141	57
GTCAATCTCCAGGTGC	alt_5619_new	14	22	13	10	15	12	17	11	17	10
TCCAGCTACTGTGATG	alt_5619_new	0	0	0	0	0	0	0	0	0	0
CCCAGCGATCGATTCT	alt_5619_new	75	133	90	66	125	84	108	62	131	83
TGTGTTGCGAGCCAGT	alt_5619_new	3	10	8	6	11	3	6	7	10	2
AAGTTAGATCGGGGGT	alt_5619_new	25	28	31	12	43	24	43	14	32	20
ACAAGCTTGCCTGTGG	alt_5619_new	21	49	23	19	45	24	47	26	49	21
CACGCCAGTTAATCAC	alt_5619_new	4	30	7	11	17	9	27	9	22	3
GCTTAATTTCATTACT	alt_5619_new	17	25	22	22	32	19	29	22	36	14
CTCGCTTTCTATCGAG	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GAACTTAACAGGCGTA	alt_5619_new	19	21	26	14	36	16	42	15	36	11
GGGCGGGGGCTAGTGT	alt_5619_new	0	1	1	3	7	0	1	0	2	3
AACTTTAGGCCATTTG	alt_5619_new	27	38	47	22	44	19	46	24	52	16
TACGTGCAAATGAAGA	alt_5619_new	30	55	34	28	41	25	55	31	56	34
GAGGAATGATTCTCTC	alt_5619_new	16	28	12	11	26	10	26	7	31	9
TTACATCACTTAGTAT	alt_5619_new	0	0	0	0	0	0	0	0	0	0
TAGGTCTAGTATTCAG	alt_5619_new	6	14	11	4	20	9	14	3	9	9
GAAGCCGGTTCAATTA	alt_5619_new	37	85	50	38	72	47	90	23	97	32
TCTTTATCGAGGTCAT	alt_5619_new	5	4	5	3	2	2	6	0	3	0
AAAGTTATCATCAGAA	alt_5619_new	10	19	8	7	12	3	17	8	5	8
CTGTATTACGTGAAGT	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GCCTAACGCTTATTAA	alt_5619_new	9	45	10	14	26	11	36	10	29	12
GGCTGGTGTTGCCGGA	alt_5619_new	52	62	50	53	93	49	76	48	71	45
TGTCGTATGATTCTTG	alt_5619_new	5	17	17	16	20	8	17	2	21	7
GGTGTCATCGAATTTC	alt_5619_new	11	19	14	24	21	26	20	14	20	8
TGGACTTAATCTCACT	alt_5619_new	17	38	21	23	29	18	38	20	32	22
ATTCCCGCGATGTTAT	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GTCTGGTAGAACGCTA	alt_5619_new	31	62	28	31	42	29	57	36	70	32
ATCATAACCGCACATA	alt_5619_new	19	28	24	22	28	9	22	15	27	5
CTAGCTGATCCTTTAC	alt_5619_new	0	0	0	0	0	0	0	0	0	0
ACGCGTCTTGCTTGTA	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GTTGAGCGGTCCGTGT	alt_5619_new	15	25	26	18	23	14	33	13	21	14
GGCCTAAGTGCCATCC	alt_5619_new	23	54	17	27	43	15	38	17	54	10
AGTATTGAAGAACGTT	alt_5619_new	4	17	11	13	14	4	16	9	14	7
TCCTGGCTTGTCTTTA	alt_5619_new	16	31	24	16	28	20	38	17	27	10
GGACAATAAGTTGCGT	alt_5619_new	16	37	24	27	34	20	54	28	28	24
GGACTGGGATGCCAAC	alt_5619_new	13	25	15	13	14	11	24	7	19	12
TCGCCCCTCTCAGATC	alt_5619_new	37	51	33	33	48	28	57	33	85	22
TTTGATATTCATAGCA	alt_5619_new	24	33	23	29	44	21	43	20	36	34
TTCTCCCGGAGGATTA	alt_5619_new	0	0	0	0	0	0	0	0	0	0
TTTTCGCTATTCGTTT	alt_5619_new	27	16	22	14	27	20	36	7	38	12
ACGTTACCTCGCAGCG	alt_5619_new	15	16	14	18	18	8	30	7	27	13
GGCCGGTGGAACATAC	alt_5619_new	0	11	4	6	14	5	12	1	10	2
TTTCTTGAGAATGTGG	alt_5619_new	22	39	19	22	31	16	32	10	36	18
TAAATGAGTTTCGTAA	alt_5619_new	0	0	0	0	0	0	0	0	0	0
TTTTTTTTTCAGAGAG	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GAGTCTCTACTTGAAG	alt_5619_new	11	31	21	20	24	4	39	12	28	12
TTGTGTTTATTAATGC	alt_5619_new	41	111	77	62	91	56	132	33	108	54
TACCTCCTATAGTCGT	alt_5619_new	22	43	27	20	43	18	49	17	50	23
ACGCTTGCCAACGTTT	alt_5619_new	6	13	5	4	7	8	12	3	8	6
GCCCTCATAGTCTTAC	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GCATGAGGGTACTTAC	alt_5619_new	0	0	0	0	0	0	0	0	0	0
TATAAGCGTAATTTGG	alt_5619_new	3	8	4	3	4	5	4	3	11	7
TTTTAACTATTTGTTA	alt_5619_new	71	92	82	78	98	63	96	73	101	51
TGCACATCTTTTGCCT	alt_5619_new	0	0	0	0	0	0	0	0	0	0
CCGCCGTAACGTAGCC	alt_5619_new	5	15	8	4	6	1	11	12	9	5
ACAACTCTATAACCGC	alt_5619_new	31	55	26	23	66	30	60	26	60	35
ACAGAATTGCGTTAGT	alt_5619_new	0	0	0	0	0	0	0	0	0	0
GCATTATGTTAGTGCT	alt_5619_new	45	58	40	27	50	41	53	25	63	23
GGGTCTCCGTTGCTAA	alt_5619_new	2	0	0	0	2	1	1	0	0	0
CTTGTGGTCAGGTGCT	alt_5619_new	3	10	3	2	9	2	8	6	4	2
GCCCTCTATTATTCAC	alt_5619_new	4	5	3	2	7	1	7	0	7	6
GGTCCATACGACCTTC	alt_5619_new	0	0	0	0	0	0	0	0	0	0
TTCAGGTATGATTCCC	alt_5619_new	0	3	0	0	0	1	3	1	0	0
GTACCCGTTGTCAGGG	alt_5619_new	33	58	38	26	55	29	56	21	67	22
GATGTGGTCAGCCGCT	alt_5619_new	25	57	33	27	61	36	76	32	74	22
GCTCGTTACTCCGCTT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGCCTAACTTTCT	ref_3238_fdr	11	26	24	28	15	21	16	27	24	13
TTTAACCCAAATCTAT	ref_3238_fdr	12	5	9	2	9	6	10	5	5	5
AATCTTTGATGGGTCT	ref_3238_fdr	53	32	63	47	50	41	29	42	49	39
TTCGGGTCTCTGCGTT	ref_3238_fdr	15	13	13	14	10	9	6	15	17	14
ATACGCTTAACCTCTG	ref_3238_fdr	7	20	9	6	14	7	10	9	14	4
CTTTGTGTCTTATTAG	ref_3238_fdr	7	12	9	10	7	8	9	13	14	5
CGTTGTGTAAGATAAG	ref_3238_fdr	5	5	10	11	4	12	3	4	7	7
CCCTCTGCCCGATTAT	ref_3238_fdr	32	29	52	50	22	28	26	42	28	36
CTCGTTGCCTTTTCAT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CGGAAATGGCAAATGC	ref_3238_fdr	20	13	13	16	15	27	18	16	12	18
ACCAGCCCTTAGGCGG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAGGGGACCGAGT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCGATACAACAAC	ref_3238_fdr	2	4	11	3	2	0	5	5	4	3
TGCGTGATTAAATCAT	ref_3238_fdr	60	31	63	62	46	46	55	37	37	36
CCAGACTCTTCCCCAG	ref_3238_fdr	8	10	12	21	18	12	10	8	19	11
GTAACCGGCCTCGCAC	ref_3238_fdr	8	9	9	6	9	3	6	6	5	8
AGATCAGTTGGGCTTG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CGGACATCATAACATG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTGCTTCGTTTGT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCCCGTTACGTCT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TATTCCGGACGGGTAT	ref_3238_fdr	26	16	36	27	20	20	15	28	19	22
TCCCTGTGTCACCGAT	ref_3238_fdr	4	2	3	6	3	3	3	7	4	9
GGCCTTCGAATTAGGG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAGTAAATATGCA	ref_3238_fdr	3	2	2	3	1	3	4	3	0	2
GGGGACTGCTAACGTT	ref_3238_fdr	7	2	9	7	2	5	3	3	4	3
CCGTTTTTCCTAAACT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CGACGCTCTACTCGAG	ref_3238_fdr	32	17	35	43	30	29	22	37	22	33
GTATAACCCCTGGATT	ref_3238_fdr	25	21	39	23	27	26	19	29	25	33
TCTACCGCATTCATCC	ref_3238_fdr	64	83	77	75	84	57	91	70	83	59
GTGACGTTATTAAATT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
AAACGTCCCCCGGTCC	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTAAATCTATAAC	ref_3238_fdr	10	12	18	16	12	11	19	5	11	7
ATAGTGTTTTTGCCAA	alt_3238_fdr	48	30	64	56	39	45	42	62	48	43
TCTCGCCAGGCTGGGG	ref_3238_fdr	13	6	8	8	7	9	10	10	4	8
TGCGGGGGGACAATTC	ref_3238_fdr	1	3	9	2	2	1	1	1	2	1
CTCATCGTCCTTGATC	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGTCCGGCGTTAC	ref_3238_fdr	16	13	18	15	17	13	12	12	13	9
GGGTTGCCCCTACCGG	ref_3238_fdr	27	17	41	16	20	17	26	21	27	28
CAGTACCAAATTGTCT	ref_3238_fdr	2	0	2	0	2	0	1	0	1	3
CTAGGCTCTTACCCAT	ref_3238_fdr	1	3	2	0	0	2	5	1	1	2
TACTGGCTCTTTCGCA	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GTATGATGGCATCAAT	ref_3238_fdr	15	17	21	16	13	10	8	19	17	16
TGCTTGTGGGCAAACC	alt_3238_fdr	6	24	11	3	10	7	13	10	20	4
TGGCGTCCGAAATTCT	ref_3238_fdr	14	6	19	4	8	7	7	13	8	17
ACTCGACCCATATGTT	ref_3238_fdr	25	25	30	31	29	27	20	24	20	14
CTTGAGCCTCATGATC	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GCCAATTTTTGCACCA	ref_3238_fdr	7	12	10	14	10	16	8	7	7	10
CGTGATACAAACTGTG	ref_3238_fdr	0	1	5	2	4	1	2	4	6	3
ATGCCTTTTAGAAGTC	alt_3238_fdr	11	12	10	4	15	13	16	7	21	12
CGAAGTGAGTACCGAG	ref_3238_fdr	13	14	5	20	10	12	9	9	12	7
TAGTTTCTAGAACAGT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TGCCAGCCAGCAAACA	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCTGACCGTCGC	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGGCGCTTAAGAG	ref_3238_fdr	12	23	16	17	13	14	13	12	16	7
TTTTTCACGGTTGCAA	ref_3238_fdr	7	3	12	8	10	6	4	5	12	8
AATGGACCATCCATGG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CGCCACTAAGACCAGC	ref_3238_fdr	5	6	8	6	3	2	4	2	5	1
CACGGCCCGGTTGTAT	ref_3238_fdr	32	32	35	27	39	21	27	37	32	19
CTGAGCTGCAACGCTC	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTTAGTATCGTCT	ref_3238_fdr	36	36	31	39	34	28	28	39	46	33
TGTCTGCTCCGGCGTC	ref_3238_fdr	94	93	112	100	63	76	87	89	90	79
GCGATCTTAATCACAG	ref_3238_fdr	35	39	31	41	42	27	31	33	40	37
TGCCACCTAGGGTAAT	ref_3238_fdr	1	1	1	0	2	0	1	0	0	0
TGACACAATTTTGCAT	ref_3238_fdr	65	49	66	73	48	52	37	51	51	45
GCAATACTCACACAAT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCGTTTGCGCCCT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACATCCTTTGAT	ref_3238_fdr	2	5	0	0	3	0	0	4	2	2
ATCTAAAGCGTGTTGT	ref_3238_fdr	25	23	30	26	26	20	29	29	20	26
AAATTTTATTCGGTGT	ref_3238_fdr	28	9	21	13	23	14	16	11	20	21
ACATTTTTTAGTGCGT	ref_3238_fdr	35	20	44	33	32	35	31	20	43	31
ATTATTTCGTTGTTAC	ref_3238_fdr	41	27	40	56	25	35	31	23	24	36
CAGTGCGGCATATGCA	ref_3238_fdr	4	4	3	6	4	6	6	6	8	4
TTCGCGTCTGTAATGG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
CGATCACATGTTTTCT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGTTACGCTCTTT	ref_3238_fdr	8	4	6	11	5	10	6	3	6	5
GCCAATCAGTGCCCTG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGCCAAATGTGTG	alt_3238_fdr	48	98	79	56	86	65	80	73	104	47
ATTTCGCGTTGCGAGG	ref_3238_fdr	35	35	34	43	27	19	34	33	30	36
ATATCTGTTTATCCGG	ref_3238_fdr	11	7	16	6	12	14	11	12	14	17
GTTGTGACACATCTAA	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GGCTATTCTCCTACGT	ref_3238_fdr	16	11	25	26	23	18	24	13	19	15
GTGTCGATTGGCCGGC	alt_3238_fdr	3	14	6	10	13	2	4	5	7	3
GTCGTCATGGAGTGCG	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAGAACCCTTTTA	alt_3238_fdr	27	43	24	31	52	24	50	23	48	30
AGTTTTTGTGCGATCA	ref_3238_fdr	11	7	14	11	14	4	5	7	6	4
AGCACGGGTCCCCCAG	ref_3238_fdr	8	18	10	9	15	10	12	8	8	4
TATCAAATACCTGGGT	ref_3238_fdr	18	14	17	25	18	11	13	18	8	14
AGCTCTATAGCACACA	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGCCTTGCACACT	ref_3238_fdr	1	4	8	6	6	8	2	3	1	2
CCCACCCTCTTGATGC	ref_3238_fdr	26	23	33	15	20	28	22	21	18	13
TAGTAAATAACCAAAT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCAATAAATTTT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTCTAAGCAATCTGAT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
AACTGTTAATTTTGTA	ref_3238_fdr	22	19	20	27	9	25	26	22	19	19
CCCTAGGTTGCTTGAA	ref_3238_fdr	35	39	54	32	34	39	30	34	31	34
AACCCCGCATATCCCA	ref_3238_fdr	63	48	49	66	79	66	57	49	80	50
TTTCATTCACCTCAGC	ref_3238_fdr	1	0	0	0	3	0	0	0	2	0
TGACGCATTGGTGCGA	ref_3238_fdr	20	20	34	27	20	29	22	34	16	19
CTTTACGAAGGTTTTG	ref_3238_fdr	24	25	30	41	23	27	23	31	18	29
ATCTCGCCAAATCACA	ref_3238_fdr	11	11	10	5	8	10	9	6	4	11
TTTCTCTGCCTTAACT	ref_3238_fdr	20	27	35	31	17	26	25	20	19	15
GGTGGCCTTGAATTCG	ref_3238_fdr	33	31	37	21	23	30	28	22	26	21
TATAACTTGAAATTCC	ref_3238_fdr	16	7	19	12	9	5	9	10	10	10
CTTCGGCAGCCTGGTT	ref_3238_fdr	33	40	47	47	27	41	24	31	25	51
TTAAGTTAAGTCTGCG	ref_3238_fdr	14	16	17	10	14	17	15	13	22	12
ATATGAAAATCGCAAT	ref_3238_fdr	93	74	109	99	83	102	88	86	82	87
TCAAGTTTGGACATGT	ref_3238_fdr	9	2	12	5	10	4	13	10	11	14
TCCTTCGGGTTAACGT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TCACCCCGCGCTGAGT	ref_3238_fdr	3	16	10	7	12	7	9	7	14	10
GGTCCCTCCTGAAGAA	ref_3238_fdr	7	9	11	10	9	6	7	8	3	5
TGCAGGCCAATTGTTT	ref_3238_fdr	19	20	36	37	32	16	33	27	19	21
GACAAGGGTTGGTTCT	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
GATCAGCGGTAAACCA	ref_3238_fdr	59	52	72	66	52	48	51	57	51	57
ACGTGCAGCTGGGTTA	ref_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGGCGCCGTGCAT	ref_5970_new	0	0	0	0	0	0	0	0	0	0
TGACGTGTCGCTGGGC	ref_5970_new	189	121	216	194	130	171	145	177	143	166
AAGAGATTTCGCCGAA	ref_5970_new	162	99	159	150	71	154	86	132	79	116
TACTTTTCGATAATTA	ref_5970_new	0	0	0	0	0	0	0	0	0	0
TAATATCAATTATATA	ref_5970_new	27	9	25	16	14	12	9	21	12	16
ACAGGCTAATCATCAC	ref_5970_new	39	34	54	25	30	38	29	34	23	44
GTTAGAGGGGCTTGGT	ref_5970_new	92	61	111	104	53	107	65	71	79	84
TTAGCGCTATGCGGTC	ref_5970_new	13	14	32	24	19	17	19	10	19	10
GTTGCGGAAAACATCG	ref_5970_new	0	0	0	0	0	0	0	0	0	0
GTCCCACAGTTGGCTG	ref_5970_new	33	26	47	26	21	44	27	27	19	41
ACTAGCGCCATACCGT	ref_5970_new	0	3	5	1	2	2	5	5	1	4
ACTGGCTATGCTTAAC	ref_5970_new	78	59	91	67	44	90	63	57	72	67
GGCTGAATTTGTCTAT	ref_5970_new	65	36	53	71	41	50	46	54	46	64
TGCTAGTCCAATTTCC	ref_5970_new	9	3	9	10	7	5	8	8	7	12
TTCATGAATTGGTCGC	ref_5970_new	0	0	0	0	0	0	0	0	0	0
CTAATAGTGAGCGGTG	ref_5970_new	0	0	0	0	0	0	0	0	0	0
GTCAAGAGCTGCGTTG	ref_5970_new	9	7	26	14	12	24	5	21	9	17
CAGTTATCTCGGGTTA	ref_5970_new	25	11	38	34	18	36	9	27	28	30
TAACCGTAAGCACTCT	ref_5970_new	40	16	22	34	15	28	14	33	12	23
GGTAAGAGTCGATTGG	ref_5970_new	30	19	30	26	14	23	21	15	27	34
GCCCCGCTTTCAGACC	ref_5970_new	0	0	0	0	0	0	0	0	0	0
ATTGTAATTTAAAATG	ref_5970_new	41	14	47	22	17	37	26	35	22	50
AGGACTTGTCCTCTCG	ref_5970_new	70	39	121	81	50	87	64	86	59	80
GATTATGTCGATATGG	ref_5970_new	191	109	203	201	107	158	129	169	121	183
GGATCACCTTATCTCC	ref_5970_new	75	25	62	83	35	70	59	63	26	73
CCGACCGTCAGACATA	ref_5970_new	27	14	31	29	18	28	20	30	32	28
TGTGGTCCCTAGGCTT	ref_5970_new	0	0	0	0	0	0	0	0	0	0
CCTCCGAGTGCCAAAT	ref_5970_new	47	49	61	57	32	68	49	53	44	66
ACTTGGCTGCCTGGCC	ref_5970_new	36	12	26	22	18	16	14	25	18	20
GCTACAGAGGGCGCAT	ref_5970_new	0	0	0	0	0	0	0	0	0	0
GGCCTACGTCTTTCCT	alt_5970_new	56	72	54	57	65	60	71	57	61	37
CTACGCGTGGGTGCTT	ref_5970_new	36	56	48	43	34	35	35	33	39	35
GCTCCGGTCTTGTGTA	ref_5970_new	37	29	44	40	31	34	29	41	53	38
TGCCGTGGCCTTACCA	ref_5970_new	80	47	99	90	61	87	75	81	76	83
CGGATACATGTCATCA	ref_5970_new	39	27	35	44	25	24	22	22	22	26
TGCTGTTACCGTCTGG	ref_5970_new	29	26	53	50	32	35	30	30	32	28
TTGGTGCTTAGATGAC	ref_5970_new	0	0	0	0	0	0	0	0	0	0
ACCTTGATGTGTTCGG	ref_5970_new	0	0	0	0	0	0	0	0	0	0
CAGTTTCCCGGCTCAT	alt_5970_new	104	64	110	108	80	76	61	91	88	80
CCCCTCCATTCACTAG	ref_5970_new	101	58	101	90	59	78	79	83	53	81
TTGTACATCGAGCCGA	ref_5970_new	10	10	20	15	16	21	17	15	11	19
TCGTCAGTCACTAAGC	ref_5970_new	0	0	0	0	0	0	0	0	0	0
CTACCCTAGATGTATG	ref_5970_new	92	73	99	100	73	86	65	94	61	75
GTGCAACCGCCCATGA	ref_5970_new	65	26	66	44	39	43	24	48	21	32
TCACACGACGGCCAGT	ref_5970_new	2	0	1	1	0	0	3	1	0	1
CATGTGGTGTATTGTC	ref_5970_new	16	10	15	15	9	14	6	9	10	3
TGTCATACAGTGGCTC	ref_5970_new	0	0	0	0	0	0	0	0	0	0
ACTGTTCTCAACTTCG	alt_5970_new	59	33	61	58	43	48	44	42	44	58
CGGATTTTCTGCCCAT	alt_5970_new	28	10	42	28	15	28	26	30	16	26
CTTCTTAGGAGGTTCT	ref_5970_new	42	17	40	33	17	40	28	32	29	35
TTCACTAGACACGTCG	ref_5970_new	0	0	0	0	0	0	0	0	0	0
CTGTCGGGTCGTTCCT	ref_5970_new	0	0	0	0	0	0	0	0	0	0
GCGAGTCGTTTCCCCT	ref_5970_new	69	31	86	84	47	78	63	66	56	64
GCGATACCTTTAGACT	ref_5970_new	8	9	11	11	3	12	14	18	8	14
GAGTTCGATTGGGCTG	ref_5970_new	38	35	64	41	38	41	36	35	36	42
TCGCGTCAATATGGAG	ref_6038_new	65	103	77	107	117	77	126	66	108	63
CTATATAATTGGTGCT	ref_6038_new	9	23	18	13	38	14	28	19	35	20
TTCGCACGGTGATACT	ref_6038_new	36	46	42	37	41	29	37	28	34	31
CTTCAACGTCCTGCGA	ref_6038_new	71	162	102	71	157	79	177	85	172	68
TCGTATACGTATTGGT	ref_6038_new	7	5	7	3	3	1	5	3	6	3
GTAAGGTGTTTACGCA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
GATATACTCGAATTTT	ref_6038_new	5	4	4	4	2	3	4	5	2	1
AAACGATCTCCGAAAA	ref_6038_new	24	45	42	28	51	26	36	29	59	29
CGATGCATCCGTAGGT	ref_6038_new	14	28	36	8	22	18	29	17	29	12
CAGTCTGTCTCGGTTG	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TGTCGTGTTCAAGCTT	ref_6038_new	34	40	25	35	38	22	62	22	64	25
TTGATTAGTCCACAGG	ref_6038_new	7	6	8	4	5	4	11	4	14	7
TCCCCCGACGGTGATG	ref_6038_new	44	73	38	41	88	42	78	44	86	38
TACGAAGGTTTTCATT	ref_6038_new	0	0	0	0	0	0	0	0	0	0
GATTGTAGCAGGTTAC	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TCGCCATCCGTCTTAA	ref_6038_new	6	37	5	10	31	4	45	2	40	5
TCTCACTACTAAGGAT	ref_6038_new	8	34	19	6	31	15	31	14	27	14
CAAGATTGTTTATTGG	ref_6038_new	0	0	0	0	0	0	0	0	0	0
CGGTGGAGGGCCTGGG	ref_6038_new	1	8	3	7	2	4	3	5	6	4
GAGTTTTGGGTCCTGG	ref_6038_new	0	0	0	0	0	0	0	0	0	0
CCACGGACTATTCTTC	ref_6038_new	12	28	17	9	24	13	34	13	19	11
CCTCAGAGTTTATGTG	ref_6038_new	31	103	45	50	115	30	99	42	115	37
GTTCCCCGTAGCGCGC	ref_6038_new	0	0	0	0	0	0	0	0	0	0
GCGAGGCTCTGATCCC	ref_6038_new	58	52	42	39	71	40	54	47	83	35
TATCACTTAGCGTTCA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TGACACTTCATTAAGC	ref_6038_new	30	37	34	35	53	24	60	16	32	33
CCCTTGACCGAGCCTC	ref_6038_new	8	16	5	4	8	6	9	7	8	5
TAATGTAACAATCTTT	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TTTTAGCACGAATCAT	ref_6038_new	26	45	45	34	49	25	51	39	48	28
TCCTTTAGGGTATCGA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
ATGACCTCTGTCTTTA	ref_6038_new	17	24	21	17	24	18	28	10	27	22
GTACGAGGCGACTTGT	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TACCCCTACAGTTATA	ref_6038_new	7	20	6	4	17	5	7	1	24	5
ATAGAACTCATGCATT	ref_6038_new	5	8	4	4	9	0	4	3	11	5
TATTAGAGTTTCTTTA	ref_6038_new	18	24	22	12	22	10	24	15	31	21
TAGCAGTTGGCCGTGA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
CTGGCTTATTCGGCAT	ref_6038_new	0	0	0	0	0	0	0	0	0	0
GGCGTACCGGTAAGTT	ref_6038_new	9	11	13	8	14	8	10	4	10	4
TTTGCCAGTTATCGTT	ref_6038_new	12	20	15	15	7	10	23	9	19	9
GGTTTTCGTTCCAGTC	ref_6038_new	0	0	0	0	0	0	0	0	0	0
GTTTGCATTGCGGTCA	ref_6038_new	31	68	59	35	86	40	63	28	95	49
ACATAGCCATTGTCCT	ref_6038_new	26	26	25	19	52	14	52	17	49	20
GGTACAATCTAGCTCT	ref_6038_new	92	91	76	80	115	62	114	73	116	81
CAGTTTAATAGACCTT	ref_6038_new	14	15	15	10	17	10	12	16	15	13
ACCACCGTCGCCGATT	ref_6038_new	0	0	0	0	0	0	0	0	0	0
AATTCAGATTGGATTA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
GTCAGAGTTGCTGACT	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TGTTAGCCTGTGTTTC	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TAGTTTTAGTCCGTAT	ref_6038_new	38	71	58	48	60	29	58	33	58	38
TGGCAATAGTCAATAA	ref_6038_new	6	15	13	8	12	8	8	5	9	9
AATTGGTACCACTTGA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
GGATCTGCGTGTAACA	ref_6038_new	23	32	30	24	33	20	27	28	47	18
GTTTATGGGGCGCGCA	ref_6038_new	4	9	4	10	9	4	10	9	15	6
GCCCCTTCCCAGTGCT	ref_6038_new	13	18	20	11	20	12	30	9	22	12
GTCTTTTCTGCGTATC	ref_6038_new	36	39	46	33	46	40	52	30	41	26
TGGGTCGGGATGTCCT	ref_6038_new	11	14	15	9	32	8	19	10	17	17
CATTACCATATCTCAT	ref_6038_new	4	9	3	1	6	2	4	7	7	2
AAGTCGCCACCGAGGG	ref_6038_new	33	44	27	16	38	37	39	26	38	34
TCCACCGTCGCCGATT	ref_6038_new	5	323	22	32	308	21	345	17	390	17
GCATCTGGGTAATTTC	ref_6038_new	18	22	13	18	17	13	36	14	14	9
TTTCGTGTATTGTCGT	ref_6038_new	10	15	11	11	25	4	20	13	17	10
ACGCTTTACGTTTGTC	ref_6038_new	0	0	0	0	0	0	0	0	0	0
CCTTTGGATGCACTTA	ref_6038_new	35	62	36	43	78	35	72	33	83	28
TGGCGCTTCTACGATT	ref_6038_new	39	40	44	22	71	32	44	31	45	38
TGAAATACTGCAAGTC	ref_6038_new	38	47	49	39	68	33	60	31	71	41
ACTGTCCGCGCTTCTA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
CAAGTCTCTGTCATAA	ref_6038_new	32	31	36	18	45	24	28	13	36	21
TCACAAGTGTTTGCCC	ref_6038_new	4	4	1	2	10	2	5	0	8	4
CTCGGCCTATACCGGA	ref_6038_new	27	64	46	28	71	34	63	45	80	28
GACTGCAGGACTCTAC	ref_6038_new	2	1	5	1	2	2	2	2	5	4
CCAATGGGGAGAAAGT	ref_6038_new	11	47	19	14	43	12	38	9	51	11
TCTTATCGTCGGTATG	ref_6038_new	48	66	54	58	67	39	69	47	79	42
TCGGCTCCCCCGTAAA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
CATCATTAAATGTGAG	ref_6038_new	34	46	50	37	50	32	62	25	69	38
GACTTATTGACCTGCG	ref_6038_new	18	23	23	18	33	14	30	13	30	18
CCGTGCATATGGCTGT	ref_6038_new	11	71	33	28	78	25	68	18	83	20
AGAAAGCCCTATGTAA	ref_6038_new	0	0	0	0	0	0	0	0	0	0
TGGATCAGATCTCCGT	ref_6038_new	22	30	30	27	29	18	33	22	36	21
TTTCCCTATATTAGCT	ref_6038_new	111	179	146	90	165	122	142	91	153	114
TTTATACTTAAATAAC	ref_6038_new	50	71	58	44	90	45	77	46	81	52
ATTTTTGGCATCCAAC	alt_6093_new	19	31	24	11	27	18	20	16	30	12
GGGTGGTTCGGCTATT	alt_6093_new	14	35	34	18	29	20	35	11	37	23
AGGGGGATTCAATAGG	alt_6093_new	0	0	0	0	0	0	0	0	0	0
TGGTTCCTGAACCTTG	alt_6093_new	13	24	18	10	37	8	23	6	28	14
GGAATGACGCGACGCC	alt_6093_new	15	19	24	16	22	10	14	14	28	20
TTCTAACACTGTTCGG	alt_6093_new	26	46	38	22	32	29	38	28	53	27
CGCTGCCGACTACGGT	alt_6093_new	31	61	46	35	62	40	52	26	64	31
CGCAGTGAAAGTGCGT	alt_6093_new	1	11	1	1	21	5	20	3	15	4
TGGGCTCTTCGGATCT	alt_6093_new	0	0	0	0	0	0	0	0	0	0
GGTCACGGAACTAATA	alt_6093_new	22	36	29	17	35	27	27	15	32	13
TGTGACTACGTGTGCA	alt_6093_new	31	43	43	39	46	24	49	25	46	31
GCGCACCGCATCTCAT	alt_6093_new	8	9	5	4	11	6	12	2	2	7
AAGACTCTGGATTACC	alt_6093_new	74	108	64	66	107	53	100	50	125	58
TCACCCCATTCAAGGC	alt_6093_new	27	72	33	36	75	33	47	29	47	19
CGGTTCGTCGGGTCTT	alt_6093_new	0	0	0	0	0	0	0	0	0	0
TACTCGGTCTGATGAC	alt_6093_new	72	113	100	60	96	76	107	53	114	56
TTCAAAGTACGAAGAA	alt_6093_new	0	0	0	0	0	0	0	0	0	0
GGTTGGTTAGTGTACA	alt_6093_new	0	0	0	0	0	0	0	0	0	0
TGGACTTTCTGTGTTT	alt_6093_new	59	85	70	57	57	75	94	49	108	52
TTCAATACCTACACGT	ref_6093_new	15	46	29	28	44	21	44	19	65	17
TGCGTAAGATGTGATC	alt_6093_new	9	22	20	15	12	12	27	15	25	15
CATTCAGGGTTTCGCA	alt_6093_new	0	0	0	0	0	0	0	0	0	0
CTGGGAACTGCCCAGG	alt_6093_new	32	53	46	31	53	26	62	29	64	30
AACCACCTTGAATCGG	alt_6093_new	5	2	3	4	4	2	5	4	1	4
TTGGATGATCTCATTC	alt_6093_new	59	59	37	28	62	33	56	42	65	39
TTCCATGTTGTTTGCT	alt_6093_new	6	11	2	2	19	4	15	2	11	3
TACAATGGATTGTCTC	alt_6093_new	0	0	0	0	0	0	0	0	0	0
GTAATGTGTTCTGCTG	alt_6093_new	32	72	38	36	63	39	52	26	64	23
ACAGCCTCCTTAAGAT	alt_6093_new	13	46	20	16	54	11	82	14	57	10
ACGGTGACCTTCGCTG	alt_6093_new	33	59	45	45	64	40	55	24	50	39
CGAGTCCTAAGCGTCT	alt_6093_new	0	1	0	0	0	0	0	0	0	1
GTATTCAGGACCCATA	alt_6093_new	70	72	56	44	79	28	75	33	73	42
GAGTGTAAGCTTAGCC	alt_6093_new	13	17	8	12	15	10	15	10	21	12
AAGATATTTGTGCTGC	alt_6093_new	8	8	11	6	9	2	10	5	11	9
AAAGTGGTTATAGACG	alt_6093_new	7	13	5	5	8	9	27	5	11	7
TGCTCGGTCGGATTTT	alt_6093_new	4	1	3	7	6	4	4	1	7	4
CGTCATCCGCCCATCG	alt_6093_new	30	64	72	41	74	58	76	36	66	45
TTTGCATCATCTGCAG	ref_6093_new	142	336	212	175	324	164	334	159	394	180
GGAAGCCCTTCGAGAG	alt_6093_new	29	33	23	22	48	23	47	19	40	25
GGCACTCCCTTTTCAA	alt_6093_new	13	66	8	5	59	10	63	3	80	19
GAATGGTAGTTAAATA	alt_6093_new	5	11	4	6	12	10	12	3	11	3
CTTGCTTTTTTCGAGG	ref_6093_new	27	41	27	15	46	24	39	22	46	28
ATCCAGGGATGTAAGA	alt_6093_new	13	36	21	15	34	22	31	19	40	18
AGCCGGTTGTTGTCGA	alt_6093_new	4	4	2	5	3	8	6	2	6	3
ACTTGTCTAAAGAACT	alt_6093_new	5	3	9	5	10	4	5	7	17	5
GACTAAATGCCTATCC	alt_6093_new	5	5	2	2	5	3	7	2	11	3
GGCACTCCCTTTTCAG	alt_6093_new	0	0	0	0	0	0	0	0	0	0
TCCGCTGCCCGCTTCG	alt_6093_new	9	20	19	24	20	12	25	12	19	12
GATGCTATAGGCACTT	alt_6093_new	12	19	10	9	11	8	5	10	11	8
CTCATTTACTATATTG	alt_6093_new	6	6	7	6	11	4	15	9	15	6
ATTACACTTGTATTTC	alt_6093_new	3	9	7	6	10	4	10	6	2	3
GAAGGTGCGGATCCGG	alt_6093_new	8	21	6	7	14	9	6	7	13	12
AGGTTCGAACGCTTGA	alt_6093_new	2	1	1	0	0	2	2	1	2	0
ATAGTCTCCGAGTAGG	alt_6093_new	21	14	14	14	20	14	17	14	25	17
TTTTGGAATGTGCCGA	alt_6093_new	15	24	14	13	23	13	24	9	20	11
AGGGGCTAATTTGGGT	alt_6093_new	24	32	34	16	30	13	36	19	30	16
ATATTCATGGCGGTAT	ref_6093_new	85	82	98	67	82	79	120	68	112	94
GTTAATGAAGTAACAC	alt_6093_new	75	118	62	38	112	63	110	46	90	51
TTTAATGCTAGTGTCT	alt_6093_new	0	0	0	0	0	0	0	0	0	0
CTTCTTACAATTGACA	alt_6093_new	133	171	142	116	195	123	176	112	204	115
CCCACTTCACTCCTTC	alt_6093_new	29	49	29	28	58	22	63	20	58	30
CTCGTGCAGGCTGCGT	alt_6093_new	19	23	30	18	42	22	42	18	34	14
TAGAAAGCCACTTCGT	alt_6093_new	14	22	15	14	32	12	27	12	33	21
GTTTTATAGGAACCCC	alt_6093_new	21	17	25	12	33	23	24	19	27	15
ATATCGCGCTAGGGGC	alt_6093_new	7	21	8	7	19	10	26	10	20	8
CTAGGTACTCGTATTG	alt_6093_new	94	178	112	85	178	80	198	80	208	74
CTTAAGCAAAGGGAAC	alt_6093_new	12	20	13	13	19	14	28	13	22	13
TTGTAGGTAAAGCGGT	alt_6093_new	10	12	10	9	10	8	16	7	13	4
TCGAAGAGTGATAAAT	alt_6093_new	0	0	0	0	0	0	0	0	0	0
ATCTGGCTGATGCAAG	alt_6093_new	106	120	131	94	102	75	139	97	130	93
CCGAACGTAGTATGGT	ref_6093_new	0	0	0	0	0	0	0	0	0	0
GCCGCATCCCAATTAT	alt_6093_new	16	68	28	24	50	24	49	17	59	19
CGTCGTCGCTCCGAAC	alt_6093_new	7	13	11	12	9	15	18	9	17	13
TGCGATAGCACTTTAC	alt_6093_new	28	39	29	34	24	21	48	30	48	17
ACGTCCCTAGGTTATG	alt_6093_new	6	17	9	8	16	6	14	5	14	9
GCTGTAGTATTGCCAT	alt_6093_new	1	4	3	5	4	1	3	5	6	4
CAAGTGCTTACAGGCC	alt_6093_new	3	14	3	2	11	3	10	3	15	6
TCCTTTAATCGGTGTA	alt_6093_new	66	80	66	48	121	60	102	50	96	44
CCGTCTCGGTCTGTTA	alt_6093_new	263	445	297	225	405	260	439	210	472	238
ACGGCTGACATCTTGT	alt_6093_new	28	26	16	14	31	18	25	18	33	27
GGATAATCATGTTGCA	alt_6093_new	122	197	192	163	256	145	235	158	292	131
CCACTCTACTTCGAAG	alt_6093_new	15	44	17	25	19	7	20	19	29	17
TAGGTTGAGCCCCCGT	ref_6093_new	52	74	64	67	78	55	68	42	82	55
CGAGTCCTATGCGTCT	alt_6093_new	238	444	281	191	411	233	429	232	460	228
CGCGGGTCCAAAAAAT	alt_6093_new	0	0	0	0	0	0	0	0	0	0
AATGGCATAGAAACAG	ref_6093_new	76	116	85	68	102	74	116	58	98	59
CTGGCCAGTGGTCATG	alt_6093_new	1	0	0	0	0	0	0	0	0	0
AACAGGAGGCACCGGT	alt_6093_new	95	116	103	91	129	76	122	70	119	69
TTCACTTGGGGTCCTC	alt_6093_new	45	65	56	48	73	39	69	35	71	46
CTCCAACTAATAAAAT	alt_6093_new	0	0	0	0	0	0	0	0	0	0
TTGTAATTATAAGAGT	alt_6093_new	56	86	53	64	108	39	73	39	81	45
TAAGGAAGGTTGAGTT	alt_6093_new	22	37	21	24	23	25	36	13	48	18
CCGCTTAGAGTCTCTC	alt_6093_new	0	0	0	0	0	0	0	0	0	0
CCACGTTGATACATAT	alt_6093_new	7	10	8	5	15	10	15	5	15	8
GCGTATTGTGTAGTGC	alt_6093_new	17	26	11	7	29	12	31	9	27	14
AGTTATTCCTACGTTC	alt_6093_new	2	10	8	10	8	6	12	6	8	9
ATCGCTTATCAAATTC	alt_6093_new	57	85	59	51	94	59	107	55	111	50
CATCACTGAAGGCTCC	alt_6093_new	10	8	8	2	10	4	14	4	8	6
GTGCTGTTCGGATCTC	alt_6093_new	0	0	0	0	0	0	0	0	0	0
TTCGTTTAAGCGCTGC	ref_2582_RC	66	98	90	69	110	57	136	78	116	54
CCATCTCGCGCTCGCT	ref_2582_RC	30	52	45	31	63	35	58	35	61	33
TCGACTTGACTTAGTT	ref_2582_RC	25	27	24	13	38	12	62	23	43	22
TAGAGTCTGGTTTGTT	ref_2582_RC	1	1	1	0	2	1	3	1	6	1
TACATTACGGTAGGGT	ref_2582_RC	9	8	6	4	8	6	14	6	15	8
TACAAGCCATCCCACT	ref_2582_RC	29	34	22	27	59	34	46	19	42	27
CCTCTTCTTGTCGTTA	ref_2582_RC	59	89	89	58	94	73	87	57	102	57
CTGCACGGTTAAAGCA	ref_2582_RC	26	70	41	49	60	34	51	37	71	27
AGCTACGCCAGATTAG	ref_2582_RC	24	29	29	18	40	14	37	16	42	23
AATGTGTGCCCCAGTG	ref_2582_RC	28	62	35	25	61	25	54	33	46	28
GACGTTTAGTGAAACA	ref_2582_RC	15	25	15	8	32	8	31	10	24	13
TCGCCTGACGATTGAG	ref_2582_RC	0	0	0	0	0	0	0	0	0	0
GACTATACGTACGTTT	ref_2582_RC	29	75	35	37	86	37	82	26	98	34
TTGACTAGAACCGTAG	ref_2582_RC	0	0	0	0	0	0	0	0	0	0
TGTTTATTGGCTTGTG	ref_2582_RC	25	53	34	28	44	21	50	12	40	18
TATTTGCGCTGGAGAT	ref_2582_RC	6	5	4	6	1	5	5	2	9	3
TATACTTGGGTGCACT	ref_2582_RC	11	20	10	10	15	5	20	9	17	10
GGCCCCCTCATATAGC	ref_2582_RC	5	4	5	7	8	6	6	3	15	9
ACTAAACTTGTACTGC	ref_2582_RC	0	0	0	0	0	0	0	0	0	0
CCTTTTTTCTACGGTT	ref_2582_RC	3	10	1	4	6	4	11	1	2	6
AGTACAAAACATACAA	ref_2582_RC	0	0	0	0	0	0	0	0	0	0
CGCCAATCTATTCGAT	ref_2582_RC	45	84	53	44	86	31	84	44	61	35
CATTGTTTAAGTTGTC	ref_2582_RC	23	46	27	33	42	26	64	27	43	32
TTTTTTGACTCCCCTG	ref_2582_RC	4	41	11	6	35	12	33	6	31	3
CCACTTCATTCCAGTC	ref_2582_RC	14	30	16	10	20	11	46	21	41	16
ACTCTGTGCCCACAAT	ref_2582_RC	1	2	7	2	1	4	6	2	3	2
CCCCTCCCATTTTTTA	ref_2582_RC	26	59	43	32	49	32	64	28	78	28
ATCACGAACGGTACTT	ref_2582_RC	5	9	7	9	13	11	17	4	21	5
TCCTTCTAGTAGCTAG	ref_2582_RC	28	35	20	12	25	16	24	13	36	28
TTTGATCACACCGTGA	ref_2582_RC	15	27	21	17	37	17	30	17	24	19
GTTTCGGCAGTTGGCG	ref_2582_RC	8	14	9	5	18	13	17	7	14	16
GTTCCGCTTCTTTTTC	ref_2582_RC	0	0	0	0	0	0	0	0	0	0
CCGTGTCCACACTTCT	ref_2582_RC	5	8	7	3	4	2	3	4	10	3
CTGTGCGTTCGTACAC	ref_2582_RC	2	21	9	14	26	4	23	4	20	6
CTCAATGAATTGTTAT	ref_2582_RC	24	42	31	33	57	37	47	39	47	25
ATTTTGGTGTCCGCTA	ref_2582_RC	36	97	66	61	82	47	85	48	82	32
CTGTTTATTTCCAATC	ref_2582_RC	0	0	0	0	0	0	0	0	0	0
CCTAGTGGAACTTGGG	ref_2582_RC	17	22	19	15	37	14	42	20	28	19
CTAATCGCGTACAACG	ref_2582_RC	0	0	0	0	0	0	0	0	0	0
TATCTCTCTTGCGCGC	ref_2582_RC	21	37	18	27	43	19	45	19	41	19
CGCTTCTGGGTTTCCA	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
AATAGTATTGACAATG	alt_4925_reverse	18	35	15	20	34	20	45	15	39	18
CCTTAAGCTCGGATTC	alt_4925_reverse	23	36	28	28	53	23	28	28	37	22
GTCTTCTTAAGGTTCG	alt_4925_reverse	11	19	9	7	12	4	12	6	10	5
TTAATGGTCTCGCGTG	alt_4925_reverse	53	56	55	45	72	49	69	45	73	38
TGTTTGTCTGTGATAT	alt_4925_reverse	1	10	2	2	8	4	2	1	4	1
GATTGTTTTAATGAGT	alt_4925_reverse	113	171	133	95	173	117	195	98	196	101
TGTTTACTTAGTGTGT	alt_4925_reverse	7	18	10	8	10	12	16	12	23	11
CTTCCCTGAAACCGGG	alt_4925_reverse	5	7	11	4	1	3	7	1	11	2
CTCTGGCTACACACGG	alt_4925_reverse	68	81	83	77	104	55	93	59	109	63
GGGGGTGCTGAAACGT	alt_4925_reverse	57	59	64	54	102	64	65	60	79	47
CCGGTCCCTATTCGTG	alt_4925_reverse	55	68	43	24	76	27	79	19	84	28
TCCAATCAGTCGTCGT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCACTCCTCTCGA	alt_4925_reverse	34	77	52	42	61	36	77	46	99	44
CCATCTATGTTTGAGG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
CCGTGTGGTGCACCCC	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TGAAAGCATCCCGAAA	alt_4925_reverse	73	133	95	111	107	87	111	77	115	68
CTTAAGACGGGATTAT	alt_4925_reverse	6	15	11	9	14	6	17	6	11	13
AAGCGCCTGCCTTGGC	alt_4925_reverse	48	57	52	39	49	30	58	43	43	33
AAATGTCGGATTGTCT	alt_4925_reverse	8	12	13	11	11	19	26	13	17	13
GAGATATGGTTCTTGT	alt_4925_reverse	20	34	14	14	25	22	24	21	26	12
TCACCACTTCTTCTAT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTAACACTTCTCT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCGGATCCTTGTG	alt_4925_reverse	2	1	0	3	2	0	3	0	3	0
CCTCGGAAATGGTGAT	alt_4925_reverse	16	29	22	23	17	19	19	16	32	19
CTGTCGCGCTACGTCC	alt_4925_reverse	25	57	29	40	63	32	57	28	64	28
ATGTCACCTAAATGGT	alt_4925_reverse	0	2	1	0	0	1	2	0	3	0
TTGTTCAGTCCAGGGG	alt_4925_reverse	33	49	34	35	40	38	38	24	37	25
GTCCGTCCCGACCTAT	alt_4925_reverse	24	34	24	26	31	15	42	15	49	14
TTATTCCTATGCTAGC	ref_4925_reverse	11	22	13	13	16	9	34	8	31	16
TCTGAGCCAACCCAAT	alt_4925_reverse	43	48	74	50	49	37	76	33	68	41
GTATTTAAAAATGCTC	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
ATTATCTGGGTGTAAG	alt_4925_reverse	19	35	33	22	34	22	45	19	43	27
TTGCGAATAACGCCGG	alt_4925_reverse	37	66	66	45	57	44	58	31	66	41
AGATGGTTCCTGATAC	alt_4925_reverse	32	55	40	40	69	23	61	24	90	35
TCTGTTATCCATGGCG	alt_4925_reverse	16	18	13	9	18	13	28	15	30	18
ATGTTTTTTCCTACGA	alt_4925_reverse	40	55	50	31	73	25	78	35	66	41
ACGAAGAGACGTCTCG	alt_4925_reverse	10	16	10	9	9	8	22	11	23	6
CGACATTAATACCTCT	alt_4925_reverse	0	2	1	2	3	2	6	4	2	0
AGAGATGCTAACCATG	alt_4925_reverse	24	32	23	18	33	22	29	18	39	14
ATATTTTCTTAGATAA	alt_4925_reverse	3	4	3	3	5	2	10	2	11	5
TAACCCTCAACGGATG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCGTTACGTCCTC	alt_4925_reverse	114	118	87	74	169	78	160	78	138	85
TTGCTGTCCTTGATCG	alt_4925_reverse	17	20	22	11	23	12	24	23	28	17
CAGGCTTCTCGATGTT	alt_4925_reverse	9	11	12	9	18	11	19	14	18	10
TTGATACGCATTTCGA	alt_4925_reverse	86	107	110	99	137	101	131	94	157	90
ACTTCGTCGGGCCCGC	alt_4925_reverse	32	48	54	54	51	44	56	45	67	48
CGAAATTGGGTCATTC	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
ACATCCGATCCCTTTG	alt_4925_reverse	13	22	16	10	15	12	18	8	15	8
TTATTACTCTGTGACA	alt_4925_reverse	17	24	19	10	16	14	28	8	22	15
AAATTATGGTCTTGAG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TGACTGTGTCGCTGTA	alt_4925_reverse	47	75	53	62	76	44	74	46	67	34
CTTCTACCTTACTTTG	alt_4925_reverse	2	5	1	3	2	3	7	2	10	1
TGTTTGCCCTTGAGTC	alt_4925_reverse	10	13	12	7	16	6	24	8	14	4
CTAGTAAAGCCAAGGC	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TATCTGGGAAGTGCAC	alt_4925_reverse	43	51	43	39	70	57	63	55	57	28
TTCGACTAGCCATATT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCTACAAGTTCGA	alt_4925_reverse	5	17	7	14	6	7	9	7	16	5
ACGCACATATAGACGG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCATTACTGCGTA	alt_4925_reverse	11	20	13	7	26	16	14	4	28	10
CTGTCGACAGTAGCTG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TAGGACTGGGCTTGAG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
CACCAAACATATCAAG	ref_4925_reverse	62	104	80	70	114	72	108	73	109	57
CAATTCTCCAATAGCC	alt_4925_reverse	1	6	0	3	3	1	6	3	4	0
TCATCAGCTCCTGGTA	alt_4925_reverse	11	16	8	15	18	16	7	4	6	5
AGTGAGCTGGCACTAG	alt_4925_reverse	18	33	33	24	50	14	25	28	35	18
ATCCAACACTTTCTCA	alt_4925_reverse	14	32	31	24	43	16	42	15	48	22
TACCTTAAGTGTACAC	alt_4925_reverse	19	32	26	13	37	14	38	16	43	19
TATACCATCTTTTTTA	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
AATGACAGTGTCTGTA	alt_4925_reverse	7	9	8	12	13	15	7	13	10	8
GACGGTCTAGAACAGT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TTGGGTCTGTCATCGA	alt_4925_reverse	63	83	60	56	70	51	100	34	106	42
TGAGTTAGATTGACGG	alt_4925_reverse	65	105	80	64	105	71	134	57	142	57
GTTGGAGCGTATCATG	alt_4925_reverse	8	9	13	10	6	6	8	5	15	6
TTCAAGCGTTATCACG	alt_4925_reverse	10	18	8	6	10	6	11	10	8	7
CGCCGCTAGGTTACTT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
ATTCGCTTTGTCGCGT	alt_4925_reverse	22	22	22	22	42	22	28	23	48	19
GCGGCGACAGCGCGAC	alt_4925_reverse	20	21	24	19	33	19	28	17	28	15
CCGCGAGACTTGCTGC	alt_4925_reverse	70	117	89	83	132	84	124	78	144	71
CGTAAGAAGGGACCTT	alt_4925_reverse	5	6	11	6	5	2	11	8	10	7
TTGCAGCGCTGTAAAA	alt_4925_reverse	2	5	5	2	7	3	3	4	5	5
CACTTAAATAATACTG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TATCGACCCCTATAAG	alt_4925_reverse	28	35	32	34	31	26	42	24	35	24
GCACCAACCCCCTAGA	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
AACATTAATCTATCTT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TTAGAATTGTTGAGCG	alt_4925_reverse	13	18	9	12	17	10	14	10	19	13
CATCACGAGTCTCTAC	alt_4925_reverse	7	22	11	4	18	6	11	15	15	12
AGATATTGGTGAATAG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
CACATGGTTCTAACAT	alt_4925_reverse	37	41	35	32	40	29	38	25	43	35
CCGGATAGGGGTATCT	alt_4925_reverse	54	79	72	62	79	64	80	43	94	54
TTTATCTCCGGAGTCA	alt_4925_reverse	3	9	4	6	8	4	4	3	4	3
GTCTTTGTTAAGACAT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
TATAAGAGTTCTCCCG	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
GGCGAATTTGCCTAGT	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
ACGCCGTGATAGCTGA	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
AATCGTCGGGAAAGGA	alt_4925_reverse	0	0	0	0	0	0	0	0	0	0
CGACGCTGAACTCCCC	alt_2378_reverse	37	54	76	51	60	50	49	54	41	37
ATTTTGTCATTAGGTG	alt_2378_reverse	57	84	69	46	81	46	108	43	106	63
GTACATTCGGAGTGTG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTCATTGTGTTGC	alt_2378_reverse	3	3	0	1	0	2	1	4	1	2
ATCCCCGGGATTGAGT	alt_2378_reverse	28	35	35	36	35	17	50	28	61	28
CGTCCGGAAATTCCGT	alt_2378_reverse	16	27	13	24	27	20	39	11	29	14
CGCAGACTTTTACTGG	alt_2378_reverse	204	370	283	246	408	228	383	239	376	213
GTTGTTTATTCTTAGA	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
AGCCGTATGGCGTGAC	alt_2378_reverse	37	52	35	42	66	40	47	33	52	26
ATAGATCGCTGGAATT	alt_2378_reverse	21	21	27	9	14	23	33	20	18	16
AATAGGTATGACTGTG	alt_2378_reverse	9	30	13	13	22	5	30	6	29	4
AGGCATATGACAGGTA	alt_2378_reverse	24	29	21	25	34	15	24	24	48	18
AATCTTGCACTTCCTC	alt_2378_reverse	7	18	7	7	8	4	4	2	8	5
TTTGTGGGCCTAACTG	alt_2378_reverse	27	29	42	22	26	21	36	20	21	17
AATCTAGGGGTGATAC	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGACTGTACATCG	alt_2378_reverse	38	61	46	40	51	45	40	47	62	37
CGAGTGGCTCCACAGA	alt_2378_reverse	46	63	59	61	40	47	60	45	70	33
TTGGATCGCATTAGGG	alt_2378_reverse	64	82	67	76	96	46	91	56	113	61
TCTTTGTTCCATCGTT	alt_2378_reverse	7	24	14	17	8	11	12	19	15	8
AGACATTTAATAGTAT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCCCGGGCCGTCT	alt_2378_reverse	78	72	73	86	74	63	100	55	78	46
AGTACTTCCACAATAG	alt_2378_reverse	15	15	10	12	25	10	9	12	13	13
CGACCAAGTATTCATT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
GCATGGCCCGATGATA	alt_2378_reverse	52	70	63	49	63	53	57	58	68	42
GATATATAAGTATGCA	alt_2378_reverse	32	34	36	31	42	24	42	36	43	22
AACCCCGTCGTTTATG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTTGCTGCGCCAT	alt_2378_reverse	14	27	30	11	16	12	29	12	32	21
CAATGCAAGAAGCTCT	alt_2378_reverse	15	22	19	16	12	15	16	9	20	16
CTAACCTGGCTATATA	alt_2378_reverse	29	45	50	30	43	27	58	31	56	39
GCTATGTACTGCTCGC	alt_2378_reverse	7	9	12	9	13	9	9	4	9	9
TTATCAAATTCTGTTG	alt_2378_reverse	46	34	41	38	34	33	50	31	37	32
GCGCCTTAGCTCCGTT	alt_2378_reverse	63	68	75	72	71	74	66	78	73	66
ACTACCGGAGACCTCT	alt_2378_reverse	72	116	83	70	116	89	94	84	99	74
CGCAAGGGACGAGGAA	alt_2378_reverse	23	33	40	31	24	33	30	36	34	26
CGGCTATGGGCCTGTA	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
CAACTCCCGATGTTTT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTAGGGCGTCATT	alt_2378_reverse	49	75	81	66	70	55	83	74	77	67
TATATTTAGTTTGTGT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
AACACCGCTCGCTAGA	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
CTATTTATCACCTATT	alt_2378_reverse	78	114	88	69	105	72	90	74	113	51
AAGTCTCATGACTTTC	alt_2378_reverse	54	54	49	43	66	45	67	44	73	56
CTGTTGTACGTGCGCA	alt_2378_reverse	19	26	14	19	14	24	29	15	26	21
TTGATGCATCGTCGCA	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCTAGAATGGTCT	alt_2378_reverse	27	35	28	28	27	26	39	33	39	33
GTAATACCGTTTGTGC	alt_2378_reverse	12	22	19	11	17	8	21	11	16	21
CTCCATGCGTCATACG	alt_2378_reverse	0	2	4	1	6	3	6	0	10	5
AGTTAGTGCTAGAGCC	alt_2378_reverse	20	33	14	16	24	12	18	16	18	17
CGGCTTACGGCCGATG	alt_2378_reverse	10	8	11	11	13	11	12	10	11	7
ATCTGCCGCTATTATG	alt_2378_reverse	23	42	37	19	34	23	28	16	43	22
TCAGGTCTTGTAATAT	alt_2378_reverse	0	3	7	1	4	3	5	2	4	5
CATTCACGTTTTATCT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTTTCTACCGAG	alt_2378_reverse	4	5	5	5	5	3	4	3	9	5
CTTGGATTGCATAACA	alt_2378_reverse	21	17	22	22	20	21	24	11	24	11
ACATCTGACTTCCTTG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
CGACGTTAACTTTTAT	alt_2378_reverse	7	20	7	6	8	5	9	7	12	3
TTCGTTAAGACACTGG	alt_2378_reverse	17	28	21	30	26	20	31	13	34	16
TTCCCGGGCACTGTCT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCCGACTATTCAG	alt_2378_reverse	110	144	115	127	146	91	124	107	152	90
CACTTGTTAGGGTTTG	alt_2378_reverse	14	14	11	7	9	7	10	8	6	4
CAGGTGGTTGGGTCAA	alt_2378_reverse	4	11	12	11	8	7	12	9	13	6
CGCTGACATCAATACA	alt_2378_reverse	109	139	146	110	148	92	144	100	167	76
TAATCCCTCCGGTTTC	alt_2378_reverse	22	18	11	19	25	24	12	10	17	16
CTGGTGATTGTAGATA	alt_2378_reverse	40	73	55	31	62	46	83	33	88	29
CCCTATATCCGCGGGT	alt_2378_reverse	1	2	2	0	1	2	1	1	1	7
GTTCATTCCATACGCT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
ATTAAAACACTTTTCC	alt_2378_reverse	19	22	23	22	25	23	29	22	28	20
AATTGGCCGCGACTCT	alt_2378_reverse	44	58	46	43	47	47	83	39	69	41
AGCTTTAAGCGACTCA	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
ACTTACCGCATTTAAG	alt_2378_reverse	3	14	3	1	11	5	9	5	10	5
CTCACAGCAGAGCCCA	alt_2378_reverse	10	11	16	20	11	17	14	14	22	11
TAGGAGATAGGAGCCG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTATAAGCGTCAT	alt_2378_reverse	9	13	22	8	15	11	20	8	14	12
GGTCCAATTGGCCGGA	alt_2378_reverse	133	165	161	146	176	134	196	121	206	128
GGCAAGAGTTTAACAG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
AAGGGTTAATGCTGGT	alt_2378_reverse	23	37	31	27	34	33	27	36	22	18
CTGTTTAATTTGAAAC	alt_2378_reverse	56	79	49	40	68	34	57	41	69	54
ATAGCCGTTTTGCGAG	alt_2378_reverse	17	41	24	25	35	21	32	15	41	22
CTTACCAGGCAGCTCC	alt_2378_reverse	5	4	1	0	3	2	5	3	11	2
CTATGGCTACTTTAGC	alt_2378_reverse	16	21	25	16	21	10	25	6	18	23
TGATACGAAATCCAGT	alt_2378_reverse	156	172	198	157	210	136	207	154	182	124
CCGACGCGAATCTTTC	alt_2378_reverse	35	41	45	39	42	41	43	26	41	42
CGGTGTGGCAGACTCC	alt_2378_reverse	22	35	39	15	27	26	40	17	25	22
CGTGCTATTTTGCCAG	alt_2378_reverse	14	16	22	10	12	9	13	11	21	12
CCTGATCAAAGCATGT	alt_2378_reverse	10	7	12	8	10	10	10	8	7	7
AATCTCTCCCCATTTT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
GTGCAACAAACATAAG	alt_2378_reverse	55	42	62	42	33	49	47	32	41	37
CATCTCTCAAACGAGT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCCTCTTGAATGC	alt_2378_reverse	2	5	5	0	7	1	1	1	4	3
ATACTCGCCATGAAGC	alt_2378_reverse	9	4	2	2	5	3	6	7	5	1
CAAGCCCACCGATCCA	alt_2378_reverse	27	54	39	28	52	30	44	29	56	24
CATGTCAGGGGTCAGT	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
CGAATAGCGATCAGTG	alt_2378_reverse	23	40	34	27	30	31	34	20	54	25
TTATTCGCTCTCCACG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
TTTTAGCTTGTTGTGC	alt_2378_reverse	6	9	6	5	7	2	11	6	10	6
TTACGTGCTGGTTGAC	alt_2378_reverse	6	20	6	9	9	6	13	11	8	4
TAACGCTTATGTATGG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
TTTAACCCCTGTTTGT	alt_2378_reverse	22	17	16	9	12	17	18	18	36	17
TTTTTTACACGCTCGG	alt_2378_reverse	7	5	1	1	5	3	5	5	7	2
CGGGATGTTCTTTGAC	alt_2378_reverse	20	22	16	21	22	13	8	27	21	18
GGGGCAGGAGGCCACG	alt_2378_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCGAGTGCATTGT	alt_2378_reverse	9	14	14	10	9	17	12	11	21	12
CTGAACTAGGCCTCTT	alt_3238_fdr	3	9	7	12	9	4	7	9	5	1
AATTCTAGCTCCGGGT	alt_3238_fdr	2	6	3	2	9	2	3	1	3	1
TGAATGGTCTTACCTT	alt_3238_fdr	1	2	1	0	2	0	4	1	8	0
AAGGTCCGGGAATGGC	alt_3238_fdr	6	9	8	10	10	9	9	8	12	9
AGTAGTGCGAACTCTA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCGAACTAATTG	alt_3238_fdr	21	27	41	21	36	24	42	25	28	18
GCGCAACATTCGTATG	alt_3238_fdr	7	7	13	9	14	12	14	13	23	7
TTCTTGCGACTCATTG	alt_3238_fdr	20	37	18	22	26	12	24	23	39	12
ATGACTGTTGTGTGTT	alt_3238_fdr	17	15	13	14	23	18	20	16	37	18
TCCGTCATGTGCTACC	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCGTAGCACTTCC	alt_3238_fdr	6	24	4	9	23	4	28	8	26	4
CTTATTTGAATTTCCC	alt_3238_fdr	6	19	11	10	12	18	10	6	10	13
TTGTTTATCGGCGTCC	alt_3238_fdr	167	183	211	189	180	150	225	150	209	122
TACAGAGCAGATCTTC	alt_3238_fdr	36	58	59	40	62	47	65	49	66	42
TTACAACTGACATGGC	alt_3238_fdr	13	17	15	8	19	10	11	7	21	6
CCGTTATGGTCTATAA	alt_3238_fdr	40	40	42	28	31	21	48	28	55	31
TCGTACCTCTCGAACA	alt_3238_fdr	0	1	0	0	0	0	0	0	0	0
TGTTACGAGTAGCACC	alt_3238_fdr	32	38	33	23	45	13	25	17	33	24
TACACGTAAATCCTGA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
CATGTATGCCTTAGCC	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTACCAAACTTCCAGT	alt_3238_fdr	4	3	2	7	4	0	5	5	6	5
TATGATTGCCCTATTG	alt_3238_fdr	70	78	63	45	81	41	87	39	96	33
ATATCAATCTTAATAG	alt_3238_fdr	6	12	4	8	6	4	8	11	8	20
GGCCAACAGGCCTTGC	alt_3238_fdr	13	12	9	4	8	7	12	7	8	5
CCTCCGACCAGATTTT	alt_3238_fdr	4	5	6	8	5	4	3	12	6	6
GGGTAACGTGCGGGTT	alt_3238_fdr	1	4	4	8	9	3	5	2	3	5
GAGCTGGCCCAAAGTA	alt_3238_fdr	19	25	32	33	39	36	46	22	40	29
AGCTTGTGGGCAAACC	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
GACTATGACTGAAGTT	alt_3238_fdr	19	29	26	17	24	15	30	20	32	13
GCCCTAGGATGTACTT	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTTGATCGCCCTTTCT	alt_3238_fdr	6	14	20	10	11	11	14	9	13	9
CCTTGTTAGGGGCCCC	alt_3238_fdr	10	37	11	16	27	11	28	13	31	5
GGCTGTAAATGCAAAA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
CTGGGTGTTCTTATTC	alt_3238_fdr	34	50	48	44	58	30	44	34	62	39
CCCCCAGGGAAGTACG	alt_3238_fdr	25	33	24	24	42	30	39	21	39	24
ATCTCCATATTAGATT	alt_3238_fdr	38	50	45	37	61	38	61	30	36	43
CCATTTTTTCCAGGTT	alt_3238_fdr	15	18	10	9	14	4	9	10	20	2
TAGGGACTGCCCAGAA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TCTTACCTGCCCCTCT	alt_3238_fdr	7	2	0	0	4	1	4	2	8	1
AGGTCCAGGACGATGG	alt_3238_fdr	1	2	2	0	2	4	5	4	6	1
GTTTTTGATTAACACA	alt_3238_fdr	5	12	7	12	18	3	6	5	7	6
GGATTCGACTTGCTCA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTCTACTTAGTT	alt_3238_fdr	3	6	4	3	5	3	10	2	7	1
TAAAAACTATATGGCT	alt_3238_fdr	58	93	92	65	90	74	98	76	75	74
CGGAAAAAGAAGCCTT	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCGCTGGATCATT	alt_3238_fdr	64	86	51	55	81	55	78	47	87	43
AGGCCACATTGTCGTG	alt_3238_fdr	6	20	8	6	10	3	22	8	20	5
CGTGTGTTACATTGTC	alt_3238_fdr	88	112	89	96	119	86	107	82	127	95
GCCATGGCTCGTCAGC	alt_3238_fdr	14	19	20	17	33	13	31	22	27	12
AACCCTAACCTGCTCA	alt_3238_fdr	18	21	25	18	32	4	20	19	37	10
CATTGGTGATTCGTAG	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
AGAATCATAGTTCCAC	alt_3238_fdr	6	13	2	5	11	7	12	4	9	10
CGCTGGTTACGGAAGG	alt_3238_fdr	3	4	2	0	2	3	2	1	1	2
CCTGCGACGAAGTCTA	alt_3238_fdr	7	10	7	6	20	1	15	7	15	3
TAGCTATATTCCTTTT	alt_3238_fdr	18	11	30	19	33	12	26	16	23	16
AAACATTGTGCCCGTA	alt_3238_fdr	5	5	3	7	4	12	8	12	12	6
AACGGATCAAGCGATC	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCTGAAACCTTA	alt_3238_fdr	17	15	14	14	21	16	14	11	17	10
TCGTTTTTATCATTAA	alt_3238_fdr	9	9	8	7	5	8	10	10	6	2
AAGTGCTTTGGGCCAT	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
GATCACAGTACCGGTG	alt_3238_fdr	4	1	6	2	0	2	1	0	2	2
TGTATGTTCAAGCTTC	alt_3238_fdr	1	2	4	0	7	3	6	4	4	0
GAAACTCTCTCCTCAT	alt_3238_fdr	26	18	17	21	33	16	20	16	22	8
TTCAATATGCATGCGA	alt_3238_fdr	7	12	11	6	10	9	17	10	16	9
CCGCTAGTCTCCGCTG	alt_3238_fdr	9	16	9	8	12	4	13	3	15	6
GTTTTCTTCTGTGCCC	alt_3238_fdr	0	2	0	0	1	0	2	0	1	0
GATAAAATATTGCACT	alt_3238_fdr	6	4	4	6	3	2	1	0	12	1
ACGTAATGCACATCAT	alt_3238_fdr	5	5	3	6	8	1	3	2	8	2
CGGGTAACGATCTAGC	alt_3238_fdr	9	10	16	5	13	10	16	10	7	3
ACAGGAGGAGATTTAC	alt_3238_fdr	4	1	3	3	3	3	1	1	7	2
CAGGAGAATTTGGAAT	alt_3238_fdr	11	17	18	20	25	7	21	14	23	12
ACAGGCGCTTTGTGGA	alt_3238_fdr	8	11	10	9	12	9	3	5	5	4
CGCCTGGCGTATCCCT	alt_3238_fdr	2	4	8	5	2	6	4	4	3	5
TATAGTGTGCATAACT	alt_3238_fdr	10	13	6	9	12	6	17	11	8	8
TCAGTGTCTGTTTGTG	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGTCTGAGGTCG	alt_3238_fdr	8	10	9	7	16	9	18	7	14	8
CACATCATCCGGACCG	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTATGGCCGCAGA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTCGATAATTAT	alt_3238_fdr	25	29	23	8	32	20	24	24	18	16
TATAGCTCTGGCGCCA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TCGTATCTCTCGAACA	alt_3238_fdr	49	82	77	65	82	67	88	52	96	46
GTCCTGGTGAACGCTG	alt_3238_fdr	10	18	12	14	14	19	22	11	14	10
GGGAGTGATCCTGTAA	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTCCCATACAGCC	alt_3238_fdr	4	6	8	9	7	6	15	4	15	13
CATAGGCACCGCACTT	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTCTTGACCAAA	alt_3238_fdr	28	44	25	22	58	20	56	22	44	20
GGAATACATCTGGTTC	alt_3238_fdr	33	48	49	38	53	33	65	45	65	45
CCCTGCCCACCTGTGT	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTATGGCTCTTAA	alt_3238_fdr	10	12	3	5	10	5	4	6	11	4
TCAATGGTTATTATTG	alt_3238_fdr	4	4	3	2	15	2	6	2	9	4
GTGAGTTTTGCGACCG	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCAATGTCAGAGG	alt_3238_fdr	4	11	4	3	7	1	13	0	12	4
ATGATGATACTCTGAA	alt_3238_fdr	3	12	8	7	12	8	11	5	8	3
AGTTTTACACCCGCCT	alt_3238_fdr	6	3	6	1	7	2	6	4	7	5
AGTTCGCTGGTGTTAT	alt_3238_fdr	0	0	0	0	0	0	0	0	0	0
GTCAAAAGAGAAAAGG	alt_3238_fdr	46	69	61	49	45	44	84	40	73	51
CAGGATAATGAGACGT	alt_3238_fdr	31	23	22	8	49	5	38	19	47	18
AATTTCGCGACTTGGT	alt_3238_fdr	21	36	29	22	38	30	41	21	39	26
CTTAACATACGTGAGA	alt_3238_fdr	33	39	20	27	43	29	24	30	47	23
GGTGCGGGTTAGACCA	alt_3238_fdr	0	3	1	3	3	1	2	2	2	3
CCGAGCCTTTGTTGTT	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
GCGCGGTCAAGCGGCA	ref_1433_RC	35	23	35	37	35	25	19	38	42	24
TGTTACTTCTACCTTA	ref_1433_RC	17	15	24	18	14	15	10	13	27	19
CGGTCGAGCTATCCGC	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
ATAACACATCGGAACG	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
GTCCCAGGCTTGCCCT	ref_1433_RC	214	188	312	254	216	220	220	217	241	208
AGATTACACTAATTTG	ref_1433_RC	57	44	70	38	56	52	51	47	45	55
CCGAGTCCCTGTGCTA	ref_1433_RC	7	33	10	8	32	9	48	6	39	11
GCAGCTAATCGTCACT	ref_1433_RC	53	50	68	52	64	53	54	51	66	46
CGGTAATCATACTGCA	ref_1433_RC	9	7	10	14	6	17	15	6	9	7
GCGTGGGACGACCTTT	ref_1433_RC	9	9	11	11	7	10	6	7	14	9
AAACCTATATCCTGCC	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
TACGCGCAGACAGGCT	ref_1433_RC	162	175	210	185	170	171	188	198	184	167
TTTCACCCTATATTGA	ref_1433_RC	22	35	36	32	23	23	34	27	35	28
CGACTGTACAGTTACG	ref_1433_RC	62	47	82	71	52	53	56	56	60	51
TTCAGTTCAGGGTGGC	ref_1433_RC	14	7	20	13	17	23	15	20	16	15
TTCGAGGGTTATCGGG	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
CCTGGTCGGATCCAAC	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
TGTTGGCGATGGGATT	ref_1433_RC	117	99	119	113	90	100	108	99	108	81
CGGGTCACACAGGTCG	ref_1433_RC	11	11	16	12	9	11	7	11	13	14
TGCATTCTGCTGAGGG	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
CAGTTGGAGACATACA	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
AGCGATTGCCCCCTCT	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
CCACAATTTGTGTTGC	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
AATTACGCACGTTCGT	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
ACCAGCCTTCTAAGCG	ref_1433_RC	3	18	17	16	18	9	14	4	9	8
GATCTCCCTGCTGCAG	ref_1433_RC	4	5	3	4	5	2	11	2	5	8
CGACAAATTGTGTTCT	ref_1433_RC	16	12	24	13	13	16	18	11	9	22
TCATTCAATTCAAAGA	ref_1433_RC	56	46	60	55	55	48	50	39	42	50
GATCCGGACGGGACTC	ref_1433_RC	11	14	14	17	25	20	21	13	31	16
CGACACATCTCTCTAT	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
AGCCCCCTCATACTTA	ref_1433_RC	42	26	43	34	34	27	39	43	36	22
TGATTCCAGGTAATGG	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
GCGTTGTTGCAATCTG	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
TATAGGGTGATTGAAT	ref_1433_RC	134	155	176	121	166	169	193	124	177	121
TAGCGTCCATGCATGG	ref_1433_RC	24	18	15	11	15	9	16	18	14	12
TGTTATTTTTGGCTTT	ref_1433_RC	73	65	98	85	91	67	67	65	72	65
CAGTTCTCTTATTTAG	ref_1433_RC	50	36	45	44	40	42	42	31	37	37
CCGGAACGAATAAATC	ref_1433_RC	2	5	2	3	3	4	2	4	4	5
TCGTACCGGTCATTTC	ref_1433_RC	3	11	4	7	14	9	9	6	14	5
GTTCGTCCGTGCCACG	ref_1433_RC	32	38	31	32	35	29	25	28	54	26
GATTTAACCACAGCAT	ref_1433_RC	100	117	117	97	103	105	108	108	123	78
CCTGCACGCTACACTC	ref_1433_RC	21	33	21	25	30	19	28	25	18	29
CGTGCCAATCTTCTCT	ref_1433_RC	12	18	33	33	19	26	22	21	13	19
GGTACGGTGCATCTGT	ref_1433_RC	15	16	33	19	18	23	15	20	35	18
TGTTCTATTTCGACTA	ref_1433_RC	16	14	10	11	3	8	7	3	7	12
AGAGATCTTACGACGA	ref_1433_RC	133	96	130	120	96	95	94	111	83	94
TCGATCATTATCCTTT	ref_1433_RC	16	22	24	24	22	22	12	23	27	12
TCATTGAACGCAGCTT	ref_1433_RC	37	37	51	33	40	37	35	25	41	27
ACCTTTTCAACTTCCG	ref_1433_RC	81	56	87	83	59	54	51	64	66	67
CTCCAGCCTGTAGCCA	ref_1433_RC	12	48	31	33	39	15	32	21	47	13
ACACTGAGACTCATAC	ref_1433_RC	9	21	19	15	32	15	17	24	31	13
TTTTTGACGGAGTTTC	ref_1433_RC	37	37	39	51	43	41	46	34	44	30
GTTATCGTCCTGAAAA	ref_1433_RC	29	30	48	38	41	37	32	38	34	24
GTCCCACGGCTGCCCC	ref_1433_RC	12	7	8	11	11	9	3	13	8	12
GTAATGTACGGTCTCT	ref_1433_RC	46	37	51	53	39	34	45	40	30	42
TACCCTGCTCTCATGA	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
ATAAGCTCCTAGCTTT	ref_1433_RC	66	44	64	64	49	58	59	49	43	58
CGCTGCCATTGCGAAT	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
AAACTGGGGAGACTTT	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
ACCCTTTTCTATAATG	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
TGATCCTGCCATTCAG	ref_1433_RC	58	23	46	34	33	39	57	28	25	34
ATCTTTAAACCCTTAT	ref_1433_RC	67	53	78	48	71	72	50	66	47	61
AGCCCGTCGTCCCTGG	ref_1433_RC	1	3	2	1	4	4	7	2	7	2
GGGCTCCGTGATCCTA	ref_1433_RC	89	90	109	87	104	87	72	91	86	98
CTCACTTTTGCTCTTA	ref_1433_RC	13	21	17	7	7	10	15	15	17	10
AGCGGCCGGTCTGGAG	ref_1433_RC	31	60	34	30	45	34	41	35	40	33
ATTCTCTAGGGATCCA	ref_1433_RC	112	104	151	136	96	113	101	123	78	100
GGTCCCGGGTCGTACA	ref_1433_RC	26	29	39	29	32	32	35	27	24	31
GATTCGTGGATATCAG	ref_1433_RC	20	15	26	26	19	17	10	20	18	20
GTATTAGCTCAGCAGG	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
GGATGTATTGCCCAAT	ref_1433_RC	16	16	14	18	17	16	24	19	26	17
CCACTCAAAGATCGAA	ref_1433_RC	15	16	22	12	18	20	11	14	9	6
ATCACGGCTTCGCTCG	ref_1433_RC	21	29	34	17	23	27	30	24	28	27
ATGATCCGACTTGAAT	ref_1433_RC	16	12	20	9	20	8	12	11	11	5
AGTGAACACTGCCCAC	ref_1433_RC	54	50	36	44	51	32	55	31	41	35
TATTCTGTCCAGGAAA	ref_1433_RC	11	8	15	9	17	18	17	14	15	7
GTGATCGAGACTCAGT	ref_1433_RC	81	78	82	86	79	85	100	85	73	91
TAGCGCCTTCATTTTG	ref_1433_RC	43	46	86	72	72	55	56	51	56	71
CGTTTGCTGCCCACCT	ref_1433_RC	57	78	77	47	51	49	80	82	58	56
TCTGTATCCGACATAT	ref_1433_RC	34	20	22	21	13	27	37	20	29	18
AGCCTGTGCGCGATCG	ref_1433_RC	58	65	62	56	67	58	65	44	68	50
GCTCCATTCCCCCGAC	ref_1433_RC	37	27	60	47	34	39	41	35	37	37
TCGGTCAACTCTTGGT	ref_1433_RC	0	0	0	0	0	0	0	0	0	0
ACTAAAGTTCCGAAGC	ref_1433_RC	6	4	9	6	9	5	2	3	1	6
TATTTCACGTAGACTT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
TTGACCCTGGAGCAGC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CCTACTGTTTCTGGTC	ref_3534_missing	17	33	33	25	36	15	52	21	53	16
ATCAGTTGTGCACGGG	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CTGTATTTGGTGATGC	ref_3534_missing	15	33	31	15	37	27	28	20	33	19
GGGTATTTTAATCCGC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
AATCATGGGAGTAATT	ref_3534_missing	46	34	52	28	53	37	35	32	33	38
TGGGTCGGCACGTCAG	ref_3534_missing	14	9	6	3	6	8	10	5	11	4
CGTATCAACTCGACAA	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
GTCGTCTCGGTAGGTG	ref_3534_missing	1	1	2	3	4	0	3	2	4	1
TTTTTGCCAGGACTTT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
ATCCGACCGCTTTATT	ref_3534_missing	0	1	1	3	2	0	4	0	1	1
TTTCATTATTAAAAAA	ref_3534_missing	10	24	20	15	18	12	25	14	15	22
TAACGGGTCGTGTTTT	ref_3534_missing	20	17	15	12	28	26	27	18	20	9
CAAGCGGATTCCATCC	ref_3534_missing	19	26	14	15	23	16	35	9	24	12
GCGTGAGTCCGACCTT	ref_3534_missing	28	45	43	39	59	31	64	30	69	34
GTCAAGAGGCCATGTC	ref_3534_missing	12	17	19	9	18	14	18	11	22	11
TACCAGCTTCTCCACG	ref_3534_missing	6	11	11	6	17	11	11	3	11	4
AGAGATATTTCTTTGA	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CCCGAGTTCAATTTTA	alt_3534_missing	34	57	41	61	70	37	58	36	56	29
GCTTGAGGGTTATCCT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
AACCTGATCAGCGCTG	ref_3534_missing	75	84	80	59	108	67	121	63	101	63
TTCCTTCTAGCTAGAG	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
TAATGGGGTCAAGACA	ref_3534_missing	21	17	11	8	11	8	24	16	19	10
AGTGAACCTATCTTGT	ref_3534_missing	27	48	37	35	57	29	52	20	50	21
AGGCTGCTTCCACTAA	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
ACGTAAATTTTTTCGG	ref_3534_missing	7	4	7	7	6	7	7	4	7	3
ATCCACGCCTTCCTCT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
ACTACTCACTCAGTGG	ref_3534_missing	29	47	34	24	60	37	49	26	41	34
CGGATCTCTTTTTGGA	ref_3534_missing	2	7	4	4	8	1	9	2	7	1
TCATACATAACTTCCA	alt_3534_missing	51	78	69	36	50	44	63	51	66	46
TGTCTATCTCTGTACC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
AAAAGTACAAGAAAGC	ref_3534_missing	23	26	31	30	43	18	36	19	29	23
GTATGCTTTATGGTCC	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTCTCCCGCTTG	ref_3534_missing	15	24	18	9	16	14	22	11	10	8
GTTTGCTCTCTTATTA	ref_3534_missing	16	16	20	25	15	10	29	9	19	21
CATTCACGGACCGGCT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CGTGACCCAAGCGTCG	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CCTACTGTTTCTCGTC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
TGCGTTCGTAGTAGGC	ref_3534_missing	9	15	8	5	2	5	13	7	9	3
TCACTTCATCAACCGC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
GGTACTCTATTTGGGT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CGACATGATATGTCCC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CCGGTTCCGCTAAGTG	ref_3534_missing	18	33	8	7	23	13	31	9	27	10
TCTTTGTCGCAGTTAG	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
AGGTGTTCGTTCTTAC	ref_3534_missing	3	1	2	2	3	0	1	3	1	1
GGTGTATACTATTAGG	ref_3534_missing	56	67	49	46	94	44	88	35	100	52
AAGAAAACATGGTTAA	ref_3534_missing	25	28	42	24	38	23	42	14	42	25
TGTCTTGGGTTACAGG	ref_3534_missing	21	40	27	27	43	12	33	28	46	23
GTCGCTGTTATCCGAA	ref_3534_missing	67	97	58	66	75	44	97	49	99	53
ACGCTCATCCTTTTTT	ref_3534_missing	32	42	24	22	39	27	38	32	50	11
GATCGAGTGCCTTGTC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
GAGTTTCGGAAACCAA	ref_3534_missing	35	73	47	37	73	36	57	29	75	33
TAGTATTTTGGGCGTG	ref_3534_missing	14	27	19	6	17	15	32	21	15	10
GTGCGGTCCGGTAGAC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
TAAATAAGTAACGTTT	ref_3534_missing	10	19	20	13	15	13	13	13	35	2
AAGATTTTATTTTCAT	ref_3534_missing	53	72	66	70	75	46	71	69	74	35
GGAGTATCTGCACGAC	ref_3534_missing	10	9	9	14	11	12	15	17	17	9
ATCCTATTGGGCATAC	ref_3534_missing	39	49	45	34	55	53	79	45	64	36
GGTGAATATCTGCGAG	ref_3534_missing	37	43	36	20	22	10	40	24	45	18
ACATCTTTCGGTAAAC	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
TGGCATCTGTGAGAGG	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
GGTAAGATGGACTGGC	ref_3534_missing	52	48	66	39	86	38	59	31	93	45
ATGTATTGAGCGTGGA	ref_3534_missing	2	4	0	1	6	6	1	2	2	1
ACATTGGACTGTGCTT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
ATCTAGGATTTATATT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
GCTTCTCTACCATCGT	ref_3534_missing	29	62	57	39	40	36	72	38	56	43
TACGGAGCGGCGAGTA	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
TCCCAACTCACTAAGT	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
TGACTCCTCGCTGGCA	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CTATACCGATTGCTTA	ref_3534_missing	31	44	38	35	54	25	60	40	76	28
TTCAGCGGTCTGCTAA	ref_3534_missing	0	0	0	0	0	0	0	0	0	0
CTCGCTGGGGTAGTAT	ref_3534_missing	19	15	11	10	17	13	11	11	16	9
TGTAGCCGATCCCTGC	ref_3534_missing	19	26	21	8	20	14	16	8	22	13
CTTTCGTCCTGAGGAT	ref_3534_missing	5	15	17	8	20	10	11	7	14	8
AATAGGGATGTATTAG	ref_2716_missing	10	24	11	18	17	6	22	16	21	5
AACGAATTATCAAGGG	ref_2716_missing	8	11	16	6	12	6	18	4	12	2
AATCTATATCAGCCGG	ref_2716_missing	23	35	16	20	54	15	50	14	47	20
CATTGTCGTTACTCAG	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
CGCCGCCTTCATATGC	ref_2716_missing	10	42	16	17	33	25	33	15	39	12
CCCAGGGAGGTAGTTC	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
TTCTGTTCAGCTATGG	ref_2716_missing	25	52	39	22	56	30	55	22	53	33
TAATGCATTTTTACTG	ref_2716_missing	16	48	38	17	54	20	52	26	62	11
ATTGAATCCTTGAGCG	ref_2716_missing	24	85	48	39	82	41	106	40	86	50
CAAAATTTATCGAATT	ref_2716_missing	3	7	2	1	1	1	8	0	3	1
TTAGGGCCACGCCGAC	ref_2716_missing	66	172	99	71	165	71	167	89	168	75
CTTAGCAGCTATTGTT	ref_2716_missing	31	52	39	22	52	25	44	22	53	24
GTAATTATGTTAGCTT	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
GGGACCATCAGCGACT	ref_2716_missing	30	42	35	12	44	19	41	14	46	12
TGTCAATTTCTAGGTA	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
AAGACCCTGGAAATTT	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
TGCGTTCCAAGGCTTT	ref_2716_missing	33	86	46	36	87	30	82	53	83	45
CTCACCGATCACGTTA	ref_2716_missing	11	33	6	9	23	5	20	8	27	5
TTAGGGCCACGCCGCC	ref_2716_missing	0	0	0	0	0	0	0	1	0	0
TATTACCGGTGCCGAA	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
GAAGATTGCTGCAACA	ref_2716_missing	51	131	91	57	117	59	122	60	147	46
CCGTTCTTCGTCTGCG	ref_2716_missing	2	10	3	4	8	2	3	3	10	1
GCCCTTCGGCTAGACC	ref_2716_missing	34	68	49	36	65	25	68	26	63	27
TTGAACGCGTACACGT	ref_2716_missing	15	8	4	6	13	7	12	4	11	10
TTTTGCGGCATATACG	ref_2716_missing	5	7	4	0	3	4	12	3	16	2
GGTGTTTACGACTGTT	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
TTTCCGCGCTAGTAGC	ref_2716_missing	4	17	9	9	12	9	8	7	11	2
ACTTCAACGTCAGACT	ref_2716_missing	8	10	5	6	18	2	22	7	12	3
TCTGTTTGTTTCAGCC	ref_2716_missing	12	25	9	10	22	10	34	11	21	10
CTTCTTTCGGGTATAT	ref_2716_missing	17	65	39	30	67	33	64	44	77	26
CGCGTAGTTCATAGCA	ref_2716_missing	0	0	0	0	0	0	0	0	0	0
AAGCTCGGGGGCCGGT	ref_2716_missing	122	314	186	116	341	133	296	165	318	122
TCTGCATCATTTGCCT	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
TGTATCTTATCGGCGG	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
TTTGTATTTTAAAAGG	ref_3351_RC	2	2	1	6	4	3	8	1	6	3
ACGCACCGTACTTAGG	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
TCCCTATCAGTCAACG	ref_3351_RC	28	31	27	13	29	26	44	27	27	27
AACCATAGTTGATTTT	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCGTGCTCTGGT	ref_3351_RC	9	11	14	10	12	9	9	3	11	7
TAACTGTCTCCCCTGT	ref_3351_RC	8	34	9	8	43	21	40	11	41	24
TATCTTCCTTACCATA	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
GTTTCAGTCAGCTAAG	ref_3351_RC	29	38	45	25	49	31	49	33	52	36
CTAGGTCACGATACCC	ref_3351_RC	11	11	6	8	11	12	10	10	15	9
CTCTTCCCTTCCTGGC	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
ATTATTCGTTGCACTG	ref_3351_RC	89	87	77	50	93	71	90	72	84	62
CCTGCGTAATCCTGCT	ref_3351_RC	12	21	20	13	38	18	39	15	33	10
TCAACTTTCATTCTGC	ref_3351_RC	23	31	21	26	41	21	37	15	36	16
TCCATCCGGGGGTCTC	ref_3351_RC	7	7	9	11	9	8	9	7	10	4
GGTTTTTGTCCCGATT	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
TTACCTCGTGGTTGTC	ref_3351_RC	25	37	19	14	31	20	35	20	28	12
TATCGGAGCTCTCTGC	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
TGAGTTTTCTGGAGTT	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
GCGAGGTCACAGTCCA	ref_3351_RC	10	5	5	3	8	13	9	4	8	8
CTCCTCGTGGCATGTG	ref_3351_RC	1	12	1	0	6	3	5	1	6	1
GTCTCTCTAATGCAGG	ref_3351_RC	38	33	34	36	33	30	33	27	49	38
TTGTTGTGTAGCGTCG	ref_3351_RC	34	29	38	22	43	25	38	33	44	31
ATTTTGTATGATAATC	ref_3351_RC	14	16	26	15	24	21	32	13	25	18
CTCTTCCCCCGGATAC	ref_3351_RC	111	126	124	110	142	90	145	100	135	92
GCTTCGGTGTCGCCGT	ref_3351_RC	15	21	13	12	21	15	21	17	24	14
GTTCTCGGTTGTCAAT	ref_3351_RC	0	0	0	0	0	0	0	0	0	0
CGCGCTGGATCGTAGG	ref_3351_RC	10	16	11	9	12	10	8	6	11	5
GGTTTCGATGTGATTA	ref_3351_RC	35	20	19	19	24	24	27	21	29	13
TAACTAAACGTCACCC	ref_3351_RC	35	35	41	20	30	35	29	27	35	25
AAGAGACATTGTTGCC	ref_3351_RC	5	5	8	10	4	8	17	8	18	9
TACATCTATGCCACTG	alt_5114_reverse	48	55	47	40	58	51	62	55	54	47
TTGCTATCCAACATTT	alt_5114_reverse	48	34	56	47	34	38	36	41	51	34
CCATCATCGTTACGTT	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGTTCCGTTCCGG	alt_5114_reverse	45	41	54	29	32	39	50	32	44	21
TAGGTCTTTTATGCAA	alt_5114_reverse	17	12	26	7	18	21	23	14	19	18
CTCTCGCTTCCGGTGT	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTGCGACCACTAT	alt_5114_reverse	10	11	10	12	6	16	7	2	14	10
GTGAACGAGTTCTTAA	alt_5114_reverse	48	43	54	41	44	29	34	32	39	26
GTCACCTGTATTGTTT	alt_5114_reverse	14	14	14	13	10	6	8	8	9	10
ACATATTTTGAACCGT	alt_5114_reverse	14	13	12	15	19	12	10	12	12	24
TGGACCTTTATAACGC	alt_5114_reverse	80	64	81	68	71	73	65	63	63	58
ATGACCCAGAATAATA	alt_5114_reverse	27	32	40	35	26	28	26	33	27	25
TAGCCCTGTGGTTCGT	ref_5114_reverse	25	23	30	27	18	20	27	16	17	18
TCCGCGTTGGTCTGCT	alt_5114_reverse	10	8	13	16	8	12	9	9	12	16
AACCAGCCCTTACCGC	alt_5114_reverse	6	15	12	9	22	8	18	13	27	7
TTCGTCAGTTCGGCCT	alt_5114_reverse	22	20	34	30	28	48	44	44	34	39
CGCATGATCGTGCATG	alt_5114_reverse	5	4	12	7	9	3	6	10	8	6
GTATTTTCTAGCTTCC	alt_5114_reverse	36	34	56	25	34	29	23	21	29	41
GTATCAGGAACTTTCC	alt_5114_reverse	69	52	88	78	78	75	66	99	76	69
TTCGTAGGCTTAGCGT	alt_5114_reverse	64	59	102	67	48	61	53	65	59	65
ATTGCATATCATCTGC	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
AATGATTGTGACTTCG	alt_5114_reverse	32	17	35	33	24	31	30	19	15	13
ACCATCACGCGGTTAT	alt_5114_reverse	19	13	27	13	6	8	15	25	16	13
AGAACCTTTACTTTTA	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGCCGGCTTTAAT	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTGGAATGTTTAG	alt_5114_reverse	163	119	200	151	152	155	143	157	146	155
GTGCCTATGTTGAACG	alt_5114_reverse	58	61	70	61	61	73	60	61	59	64
CAAAGCTTAATGCGCG	alt_5114_reverse	22	11	25	16	15	25	12	19	21	13
CCAGGCCAAGTTCGTA	alt_5114_reverse	5	8	8	14	9	3	10	4	4	9
AAGTTAATTTCTTTTT	alt_5114_reverse	64	40	54	52	41	42	40	42	32	48
GACTTTTCGCGTCCTT	alt_5114_reverse	41	34	68	29	28	39	26	41	40	28
CGTCAATTCCAAACGC	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCAGTCGGGCTGT	alt_5114_reverse	32	19	16	20	23	23	20	17	18	20
CGTAGCACCGCGAGTG	alt_5114_reverse	1	2	2	1	2	0	1	1	3	2
TAGAAGAGTCCCCTTC	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCTTTACCATTGC	alt_5114_reverse	22	16	29	9	20	29	25	21	25	17
GAGACGGTAGTTCCCT	alt_5114_reverse	3	3	6	5	5	4	4	7	6	5
GGTATCTTAGGTCTAG	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTACAATGAGCCT	alt_5114_reverse	46	36	51	37	44	38	44	39	56	39
TACTTAAATATTTATC	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TAATAATGCTTGTGGT	alt_5114_reverse	31	19	32	13	20	27	20	19	18	26
CCTACCCCTGAGAGGT	alt_5114_reverse	53	94	94	71	84	39	104	53	95	39
CGCGCTAGGAGCAGAC	alt_5114_reverse	22	11	21	24	11	17	27	20	14	9
GTTGTAGTTGCATTGG	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TTAATGAACTGGAAAT	alt_5114_reverse	24	19	28	24	14	26	30	32	19	25
CCTTTCTCGGCATTTT	alt_5114_reverse	27	27	25	24	18	39	20	31	30	34
GTTGACGAGATAGCTC	alt_5114_reverse	32	28	28	25	22	25	22	30	26	24
AATGATTAACCGAGCG	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TCCGAATGCTTCGGCC	alt_5114_reverse	2	0	1	4	2	4	2	3	3	3
TGGTCACTTGGCAAGG	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
AAAGGTCTGACTTCGC	alt_5114_reverse	4	16	17	8	10	12	12	7	11	4
CCTCCCTCTGATCCTC	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
GACATCCTATGTATAG	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
ATACCCTTCGACATGA	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCCTCTGGTCCTC	alt_5114_reverse	18	78	21	22	68	22	74	20	91	18
ATGGATCGTTCACCAG	alt_5114_reverse	27	15	33	24	23	21	24	20	24	25
AGAGTGAGGCCTATAC	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTTATTTCGTTAC	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGGGCTGGTGAGG	alt_5114_reverse	31	29	35	17	10	26	13	23	23	19
TAAACACCATAGCGGA	alt_5114_reverse	7	4	8	8	7	4	6	4	0	10
TAACGGCGTACAGCCG	alt_5114_reverse	84	51	117	73	65	81	63	106	82	90
CAGTGTGCCTAATGCG	alt_5114_reverse	68	59	79	65	69	70	72	41	73	73
CTCAGATACTAGGCTT	alt_5114_reverse	53	36	45	42	42	39	31	51	37	55
GCAACATAGTTTGTTC	alt_5114_reverse	41	47	46	52	44	38	37	40	53	40
CTGGGGCTCTCTTGGG	alt_5114_reverse	37	23	44	40	30	23	25	32	31	40
TCGGCCACTTTAAGAA	alt_5114_reverse	26	33	24	26	40	20	33	30	37	23
TTCCTACCAGTTACCG	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTAAACGAAGGAT	alt_5114_reverse	7	3	5	4	2	4	4	6	5	1
GGTCCGTGCGTACATT	alt_5114_reverse	38	24	36	37	35	35	26	25	46	36
GCATAGCTTAACATCG	alt_5114_reverse	50	44	48	26	43	33	39	29	37	42
CCTCAGTGGCATACGA	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
ACCAGTTTTGTTTGAG	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGGACTTGTCGAT	alt_5114_reverse	48	30	36	51	34	33	27	34	17	30
TCGAGATCACTCGTAT	alt_5114_reverse	0	0	0	0	0	0	0	0	0	0
GCACGCGGTTCGTGAT	alt_5114_reverse	6	2	1	8	2	2	6	4	1	2
TATGTCTTGCATGGGC	alt_5862_new	21	29	26	16	25	32	24	16	47	12
AGACAATGCGGTCATA	alt_5862_new	21	33	23	16	26	18	33	17	41	9
CGGTAACATTACTCTG	alt_5862_new	20	34	21	17	31	23	38	6	45	21
AATAAATTTTGGATAA	alt_5862_new	0	0	0	0	0	0	0	0	0	0
CGCTTGTGGTGTAAGG	alt_5862_new	21	68	31	19	51	25	77	23	61	21
CGGGCCTGTATCTTTG	alt_5862_new	17	40	39	17	52	17	46	20	63	20
AGGTCCCCAGGGTTTT	alt_5862_new	15	30	15	9	21	13	15	10	23	12
TGTAGTTTTTTGGAGG	alt_5862_new	0	2	0	0	3	2	0	2	1	0
CAATGGCGACTGTTCC	alt_5862_new	9	30	10	7	28	14	17	10	20	6
TCGGTAACTCAGAAAC	alt_5862_new	0	0	0	0	0	0	0	0	0	0
TCCGACTGCTCGCCGA	alt_5862_new	22	20	16	21	20	16	40	32	27	22
TACAGTGGTCGTTGTT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
CACAAACTCTATGGTT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
GTGCGGGTGTGCCCTA	alt_5862_new	12	30	10	16	35	15	29	16	23	10
TGTCCGAGGCCTTACT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
GCTTACCAGCTCATCA	alt_5862_new	9	17	17	12	17	7	17	3	14	8
GACTGCCTTACTGCGT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
CAAACACGTGCTCCGG	alt_5862_new	34	64	68	50	84	51	73	37	100	54
TTGTGAAGTTGCAAAA	alt_5862_new	4	2	2	3	0	2	5	1	7	1
CTGATTGTCTGAGCCC	alt_5862_new	41	70	57	43	86	36	62	26	61	36
GCCATCCGGCTGTATG	alt_5862_new	6	20	11	16	22	10	31	10	32	11
TCTCCGTCACTGGGTA	alt_5862_new	1	14	3	2	15	0	7	4	17	2
AAACGGGGTAGTGGAG	alt_5862_new	28	37	18	17	39	14	37	17	50	33
ATTTACATGTGTACCT	alt_5862_new	25	35	44	25	40	19	43	23	58	19
TTTGATTTTACATGGA	alt_5862_new	42	88	62	54	76	58	93	45	69	37
CAGAATATCAGTCTCC	alt_5862_new	2	6	9	3	3	1	10	1	7	1
AGTGGCTGGTTAGTGG	alt_5862_new	0	0	0	0	0	0	0	0	0	0
AAGCCCCAGTAACCAA	alt_5862_new	14	30	24	15	26	17	35	21	30	14
AATGCTTTAGTTCGTC	alt_5862_new	96	128	108	77	139	89	134	90	155	66
GAGTACCCAGTAGTCG	alt_5862_new	44	79	48	60	77	51	74	56	77	38
TCGGGTTCTAGGAGCA	alt_5862_new	11	17	11	16	25	11	14	15	21	7
CCGTTCTCGTTTCTGG	alt_5862_new	13	24	9	7	28	13	27	9	20	4
CTTCGGTATCTTCACC	alt_5862_new	30	48	33	27	40	32	48	33	50	21
GGTCAACCCTCGCCGC	alt_5862_new	15	27	13	16	29	16	21	17	20	8
TCGAGCTAGATTGATT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
CCCCAGCAATCTACAA	alt_5862_new	16	14	18	13	13	10	16	3	14	11
CGGCGCTGGGCCTTCT	alt_5862_new	7	62	13	7	66	9	72	7	76	13
CATACAAATACCGACT	alt_5862_new	18	30	26	15	32	14	32	13	31	20
GGCGATTACGGGTCTT	alt_5862_new	26	50	24	31	28	26	33	15	36	11
CGTAGTCCCTCCCAAT	alt_5862_new	23	63	48	22	85	32	89	26	71	32
ACCGGGTCGGTTAAAT	alt_5862_new	3	8	2	0	9	2	6	1	2	3
CCACGAGATTGTGTGT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
TGACTACGATTGTGTA	alt_5862_new	4	9	4	4	20	4	16	3	17	5
CGAGGTATATTGTCGA	alt_5862_new	0	3	0	0	0	1	1	0	1	1
TCTTTTAGTGCAATTC	alt_5862_new	0	3	6	2	4	1	3	0	3	1
CACCACGGGAAACATT	alt_5862_new	3	5	3	0	6	1	12	1	2	3
TGGCTTTGTAATTCGG	alt_5862_new	0	0	0	0	0	0	0	0	0	0
TCCTTATCTCCAGTCG	alt_5862_new	6	11	2	3	9	6	8	6	7	6
GTCCGTCTTGTCATTG	alt_5862_new	0	0	0	0	0	0	0	0	0	0
GCTGCAGCTTAAATAT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
TCAATTTGGTTAACGT	alt_5862_new	0	0	0	0	0	0	0	0	0	0
CTGTCGTTCTTGTTCC	alt_5862_new	0	0	0	0	0	0	0	0	0	0
TGGCTTGTCATTTGGT	alt_5862_new	11	14	14	16	15	15	19	9	17	13
CGCACTGCTTCAGTTC	alt_5862_new	4	12	13	8	15	4	23	7	11	7
TTTCTTCGGGCCTCTC	alt_5862_new	0	0	0	0	0	0	0	0	0	0
CCGATTCAAATACACT	alt_5862_new	21	69	34	31	66	29	63	28	86	33
CTCATGGGTCCTTGCG	alt_5862_new	8	15	14	9	18	7	15	3	18	9
AAGTGCCTTATTCCGG	alt_5862_new	3	3	5	3	4	2	6	5	5	6
GTGCCTGTCCTATGCT	alt_5862_new	3	8	6	3	10	3	13	3	8	6
TCGTCTGACCCTTAGC	alt_5862_new	0	0	0	0	0	0	0	0	0	0
GCATATTTATATTGCA	alt_5862_new	84	139	107	67	135	76	140	72	134	79
TATCCGGTCAGAACTA	alt_5862_new	19	18	15	19	18	13	19	18	24	9
GCGGGCTTCTAAGGGA	alt_5862_new	19	41	31	17	40	27	48	27	49	32
TTATATCAACTTACTT	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
TTAATCTGCATTATTG	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
AGCACAGCCTCCGTGG	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCCGCATGTCTTG	alt_3878_reverse	2	9	5	3	13	0	7	0	11	4
GTAATTTTCAAAGATC	alt_3878_reverse	0	4	0	3	1	4	3	1	1	4
TCCTACTGCTTGAGTA	alt_3878_reverse	31	38	30	15	41	22	37	20	48	20
TAGCACGAACTACGAA	alt_3878_reverse	2	5	2	0	2	0	3	1	2	2
ATGCGCCGGGATCGGT	alt_3878_reverse	11	24	7	12	18	8	27	8	30	8
GTATGATGCGCATTAT	alt_3878_reverse	7	12	10	7	13	7	24	11	15	6
ATTTTTTCCCTGTGAA	alt_3878_reverse	1	11	4	3	4	1	6	2	2	4
GATTGTAACCTATATT	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTTGCTAGTTCCG	alt_3878_reverse	10	41	27	15	55	17	50	21	60	17
GGGACCGACATGGCCA	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
TGACCTACTATTTTTG	alt_3878_reverse	66	115	96	85	97	85	104	76	114	103
TGTCAAATATCCAGGA	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCAATCGGTGGCT	alt_3878_reverse	206	302	177	156	300	183	278	151	266	122
GCCGGAGGTACTGCTT	alt_3878_reverse	10	44	10	8	42	13	51	10	64	6
CCTCGACGCATTATCT	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
GGTAGCAATGCTCAAG	alt_3878_reverse	44	68	42	43	49	42	77	29	64	49
TAATAGATAGAGCGCG	alt_3878_reverse	8	11	16	10	12	9	25	9	18	8
TTCATTCTAACTCTGT	alt_3878_reverse	47	72	56	43	75	57	92	43	87	33
TGTCGGCTCTGCTCAT	alt_3878_reverse	16	21	16	19	36	13	30	11	22	13
AATCTCGCGCTGGCAG	alt_3878_reverse	31	52	30	31	51	32	57	27	53	33
GGCTCTGCCCTCATGA	alt_3878_reverse	38	78	44	29	65	43	80	38	63	34
TCTTCGCCGGAAGCGG	alt_3878_reverse	8	14	21	15	17	8	30	9	22	15
TGTTATATAAACATCT	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGCCATCGGTTCA	alt_3878_reverse	11	14	5	13	18	6	9	8	11	6
GTTCAAGAGTAGATTG	alt_3878_reverse	19	29	13	6	27	8	26	14	20	14
CCGAAGTCTGGCCCGG	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
AGTAACTGTGTGCTTT	alt_3878_reverse	3	8	6	4	6	6	3	0	8	4
GTTACTTTCGCCTATT	alt_3878_reverse	52	76	58	57	103	47	91	54	102	52
TGTTAAAGGATCCAGT	alt_3878_reverse	2	13	10	8	16	3	18	6	11	6
TACGCCTCTCCTTCAT	alt_3878_reverse	3	6	5	3	4	1	9	6	4	1
AGTTCAATCGTGTTTC	alt_3878_reverse	33	63	39	36	80	35	76	22	66	25
GGAATGTCTCATAATT	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
CCAGATGAAGTAGCAC	alt_3878_reverse	2	17	3	13	11	12	27	10	19	5
CTCGTAACAGGCGAGG	alt_3878_reverse	6	8	7	10	5	4	16	3	5	8
GATATTGCTTAATCTG	alt_3878_reverse	28	57	27	27	57	28	52	32	40	24
TCACGCAGTGGCCCTA	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
CGCACCATTATGGTAT	alt_3878_reverse	21	33	29	9	32	19	23	6	31	11
CACTTGCGCGGCTGTA	alt_3878_reverse	4	4	2	2	15	3	3	0	13	3
AATCCTTATTTTGGTC	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTATCTAATTGTG	alt_3878_reverse	21	32	25	23	30	18	37	13	33	11
CTGCCTAATTGGCAGG	alt_3878_reverse	7	11	4	7	9	4	17	3	9	6
GTAAAATTACGTTCTT	alt_3878_reverse	31	37	36	21	34	26	38	25	41	23
CGTCAGGGGAGGTGCG	alt_3878_reverse	19	47	23	28	49	15	50	22	45	21
AGTACAGGAGTTCGGA	alt_3878_reverse	33	50	51	29	63	38	72	23	51	40
CGTTCGCCCAATGGCA	alt_3878_reverse	3	2	6	3	1	2	2	5	6	4
GGAATTACAGGGTCCA	alt_3878_reverse	2	6	5	10	13	7	8	7	18	7
TTTGTTTGTTGCGCAT	alt_3878_reverse	23	35	20	16	34	27	42	21	33	15
TACGATTGAACGTATC	alt_3878_reverse	5	16	7	9	11	11	14	6	15	12
CCCCGCCTGCTATGGG	alt_3878_reverse	1	5	0	0	5	0	4	0	5	0
TGGCGGAATTGGGGAG	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCTCGAAGACCAG	alt_3878_reverse	53	63	60	44	89	49	99	49	98	32
GAAGCACCATTACGGA	alt_3878_reverse	27	43	27	24	31	22	45	18	49	21
GCCATTCCTGATGAAT	alt_3878_reverse	8	13	5	8	21	4	8	10	17	10
TGTCTTCTTTGTTGCC	alt_3878_reverse	3	8	6	4	5	2	9	1	4	5
TGTAGTGGCTGGGTTC	alt_3878_reverse	10	35	21	21	20	11	21	21	29	12
CTAGTTGGTATTTATA	alt_3878_reverse	6	4	6	2	8	3	9	3	14	3
GGCTCATGACGCTGGA	alt_3878_reverse	2	0	2	1	4	3	0	0	1	2
GTTGCCGGTTGCTTAA	alt_3878_reverse	45	78	58	44	74	60	82	49	90	37
TTGACCTACTTTCGAT	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
GATTAGTTGCTGCGTT	alt_3878_reverse	18	39	21	19	38	23	43	18	34	22
TTCGAACCGCTTCTAC	alt_3878_reverse	8	14	9	5	12	9	16	6	16	2
TGTCGTGTATTACCCG	alt_3878_reverse	2	7	7	7	13	6	3	4	8	9
TAGCAGCCTTTGAGAC	alt_3878_reverse	6	5	5	5	5	6	8	5	10	7
TTAACATTGAAACTGA	alt_3878_reverse	0	1	1	0	0	0	2	0	0	1
GGGTTAGGGGTTGTAT	alt_3878_reverse	5	16	9	6	6	14	14	7	10	11
TGGTGTTTCTCTTGTT	alt_3878_reverse	9	19	13	10	22	12	17	19	18	7
TTGCATTCAGGTGCTA	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTGTGCCATAGTT	alt_3878_reverse	0	0	0	0	0	0	0	0	0	0
TCGACTTCGTTCGACG	ref_939_upstream	97	63	123	102	80	75	61	103	72	87
ATCGCATGGCTATGGG	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TCAAAGGGCGTTGTTA	ref_939_upstream	43	17	60	38	30	48	17	56	16	34
GTTATTGTGATAAGCA	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
ACGACCTTCCTAGCGC	ref_939_upstream	131	59	189	156	69	146	86	158	86	114
ATGTGCATGTCAAGCG	ref_939_upstream	2	8	9	3	2	7	2	8	3	6
TTTTTTGCCCACAGGT	ref_939_upstream	163	57	155	162	82	126	76	158	67	143
ATTTCCGGGCGCACGT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGTGGCGGTTGTG	ref_939_upstream	2	0	2	0	0	0	0	2	2	1
TCAACACTGTATTCCG	ref_939_upstream	57	17	59	58	19	44	32	42	28	40
AATTGCCGCCCTATGA	ref_939_upstream	0	6	4	7	12	7	11	8	9	11
GGGTCTCGCTGAGGAT	ref_939_upstream	132	48	142	133	50	140	54	116	44	102
TCGGTTACATACCTGC	ref_939_upstream	11	4	7	9	11	8	4	5	15	7
GCAAAGTTTGGGCCTT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGTTATACGCCAC	ref_939_upstream	75	46	92	81	32	68	32	63	29	54
TCGGTAAAGAGGGAGG	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
ATAAACATACCCCAGT	ref_939_upstream	37	24	61	52	18	44	31	46	19	35
ATGTGATCTTCTCGAA	ref_939_upstream	5	0	6	1	2	4	0	5	6	4
ACGTACGCGCCCTAAG	ref_939_upstream	253	97	307	258	118	228	134	194	114	227
CCTTTCGTGGCCATGT	ref_939_upstream	54	31	51	64	29	53	32	47	26	41
GTCCTCTGAGGATTAT	ref_939_upstream	104	42	82	105	54	86	54	82	42	90
CCTTACTCGCTCCTTA	ref_939_upstream	12	8	18	17	3	14	7	8	12	11
GTACCTGAAAGTTTTT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTACACCCCAAT	ref_939_upstream	36	21	33	48	20	27	15	33	22	24
AGGGTCTAATTCCAGA	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
ACAAATTGAGGGGATC	ref_939_upstream	80	39	102	86	43	66	31	57	31	65
ATTACAACGTGTTCTT	ref_939_upstream	18	15	30	24	11	19	6	23	11	20
TTCCGGCCCGCCGGTT	ref_939_upstream	5	1	7	3	3	5	0	4	2	5
TTCCCAGCTATTATGG	ref_939_upstream	8	7	16	14	11	19	11	9	17	16
ATGTTGGCAACTTACC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGATTTTGCTTGT	ref_939_upstream	220	91	277	235	129	200	117	208	125	198
CGACTTTCTGCGCTCT	ref_939_upstream	140	44	137	131	56	115	63	135	60	101
CTGACAGTTGTTACGT	ref_939_upstream	17	6	20	20	9	10	18	15	10	22
TATGCCGGGTATCGGA	ref_939_upstream	173	83	231	176	68	173	89	153	95	144
TAGCGCTGGCAGATAC	ref_939_upstream	169	88	224	165	77	130	82	132	90	147
GAGATACATGTTACTC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
ACTGAAGCTGCGGTCT	ref_939_upstream	90	47	101	93	49	73	51	96	35	88
CGGAACCCTTTCGATC	ref_939_upstream	11	9	21	24	13	18	8	14	5	11
CCACTGTCGCCTACGC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TTAATGTTGCGCGCAC	ref_939_upstream	35	22	47	38	11	42	19	31	22	32
GCGCTGGAAGGATACT	ref_939_upstream	236	114	290	232	106	210	127	184	111	188
TAAGTAAAACACGCCC	ref_939_upstream	157	100	194	178	113	160	107	149	92	165
TCGGAGCAAGGGATTC	ref_939_upstream	150	88	221	175	103	154	102	159	103	160
ATAAATTGGCCGTATT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
CCTGTCAGCGTCTTCC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTCTTATTCCATG	ref_939_upstream	123	57	134	111	56	118	51	115	50	84
AAGGGGAAGCCTCAGT	ref_939_upstream	90	39	101	113	53	81	49	71	44	63
GTAGTGCGGTTACCGC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
CTCCATGGCTAAACTC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGTTGATTATTCT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
GCGCTCGTCCAGATGA	ref_939_upstream	54	23	54	45	33	38	20	45	29	40
GCCGGTGATATGACGC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
AAAAGACATATCGGGG	ref_939_upstream	79	41	73	55	26	53	37	57	47	48
ACTGAAACTTGGTCTG	ref_939_upstream	58	34	86	54	34	53	36	69	37	71
CTACCCTATGTACCTT	alt_939_upstream	6	3	9	8	2	8	7	8	6	10
TTCGCTTGGTCTACTT	ref_939_upstream	52	27	58	61	26	35	27	58	33	57
GGAACCATATAGTTTC	ref_939_upstream	103	40	119	92	39	106	51	76	56	74
GGCATTATTAGTGCGG	ref_939_upstream	22	9	21	25	21	25	13	18	17	20
TTCCCCTGAGTTGCAT	ref_939_upstream	26	12	41	42	22	24	9	28	13	27
TTTTAGTAGCTTTTTC	ref_939_upstream	29	22	37	30	15	22	19	26	13	29
CTAGACTTGTTTCGGG	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TAGGATTCTCTCGCGT	ref_939_upstream	48	30	42	47	27	44	34	45	27	34
TAACTTTGTGCTGCGT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
CTCTTCTGTCTGGCTG	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCCTTCGCATTAT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TATTAATTTAGTATCG	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGGCTAACGTGAT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTTTTCACTTTGT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TTAATGTGCTGCATAA	ref_939_upstream	19	10	21	18	6	23	12	18	13	22
ATGCCGGCATTTGTTT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAGACATAGTATA	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TCGTAATCCTATTTTA	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
GACTCTTATTAGAAGT	ref_939_upstream	14	7	9	13	2	11	11	18	7	15
GGCCCACAATCGGCCG	ref_939_upstream	26	11	34	15	14	21	19	24	22	27
TACTTAATTGACTCTT	ref_939_upstream	79	49	119	84	32	68	52	63	36	66
CTTTTCTTCCTTCGTT	ref_939_upstream	85	41	93	68	47	85	33	68	38	82
GGCTGGAAGTGCTACA	ref_939_upstream	51	20	38	57	22	44	18	35	26	32
CTTCCTGTCTTGGGTC	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TCCAGTTAGCGGAAAA	ref_939_upstream	133	85	171	134	91	116	85	131	82	142
CTATACGGGGCTTAGG	ref_939_upstream	54	34	52	53	28	48	35	55	38	45
TCTCAGCAATCGCATT	ref_939_upstream	20	12	37	27	12	14	10	16	26	18
AACGCCTATTTGCACG	ref_939_upstream	30	33	45	38	39	42	22	42	34	37
CCATGCCTTTTATGTT	ref_939_upstream	57	32	53	68	36	62	39	59	38	41
GTACCCTGTTAGCTCG	ref_939_upstream	104	59	100	98	25	77	38	71	51	63
TCTGGGTACAGTTGGT	ref_939_upstream	28	24	36	39	14	42	27	39	27	33
TGTCTCTAGTAACGGG	ref_939_upstream	194	95	219	132	109	204	111	182	104	168
TACACCCCTGCCGTCC	ref_939_upstream	11	4	7	9	7	10	9	4	15	6
AACATGGTCTGAATAC	ref_939_upstream	47	27	65	53	31	57	30	50	15	46
TTTATCATCTTACTAC	ref_939_upstream	53	25	54	47	24	33	16	32	18	41
CAAGTCGTTGTGCAGG	ref_939_upstream	11	39	5	20	36	16	21	16	45	18
TCCAAATATCGGACGT	ref_939_upstream	21	14	20	18	14	21	13	14	6	15
ACGTCAGCCGAAGTAA	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
AGCATTATCGGTGAAT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
CAATAGTTGTTCCTGT	ref_939_upstream	6	2	8	9	8	4	4	6	2	7
TCCTGTGTATAGCGAT	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
TGGAGTGTAAGTATTG	ref_939_upstream	0	0	0	0	0	0	0	0	0	0
AAACCCTCATTCCCTC	ref_939_upstream	14	9	11	11	10	13	4	5	8	8
GATGTCATAGTTTGTA	ref_939_upstream	11	16	21	25	9	25	12	14	15	22
TGCGGTTTTATCCGCT	ref_939_upstream	16	8	14	21	16	9	13	17	9	16
GCGGTTAGGCTCTTGG	ref_939_upstream	4	6	7	10	7	10	3	12	7	4
CATCGCTCGGAAGCTA	ref_1819_fdr	34	34	43	38	36	38	36	34	46	42
ACGTTTGTTTTGAGCT	ref_1819_fdr	46	37	52	42	60	48	39	47	43	35
TTAAGTTAGAAACTGA	ref_1819_fdr	61	65	73	55	75	79	80	56	64	57
CCTCGATTCCCTTTAC	ref_1819_fdr	56	41	63	52	66	56	55	55	59	47
CTATCTCACGCGAATC	ref_1819_fdr	132	115	156	101	126	143	123	121	139	147
GTTTCCACTCCGCACC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CTTCACCATCGTTGCT	ref_1819_fdr	4	48	8	5	36	3	46	5	53	3
CTTTCTGCATATTTGC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGTTTAAAATACG	ref_1819_fdr	0	8	3	3	1	7	7	5	7	2
ATGTTATCACAAGGTT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CATAGGAGACTCCCTT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTTACGGCGGCTT	ref_1819_fdr	15	5	7	13	7	9	11	15	14	6
CCATTAGGTGATTACT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCTTGCTTCTGAT	ref_1819_fdr	19	11	21	9	5	15	12	9	20	14
TCTCCGGAATTTGATC	ref_1819_fdr	34	22	28	10	22	19	20	17	29	14
TTGGGCTTCATTTGGG	ref_1819_fdr	21	21	36	20	16	22	28	22	34	22
GATCTTGCGGTGTCCA	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CACCCGTAGCGCTACA	ref_1819_fdr	80	100	107	99	76	112	80	98	102	79
GAGTCGCAAGTGGGTT	ref_1819_fdr	46	43	58	36	36	48	52	48	61	45
AGCGATCCAGGCAATA	ref_1819_fdr	58	45	51	47	59	52	55	44	53	34
GTGGCCCTGCATATCT	ref_1819_fdr	32	28	38	37	37	32	36	27	27	24
GGCATGTCGTATACCC	ref_1819_fdr	48	42	58	57	50	40	38	35	49	42
ATTCTTTATAATTCTG	ref_1819_fdr	8	9	14	15	7	13	7	11	14	12
TCGAGTGTAGCCGTTG	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CGGTATATCCATGTAA	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GAGATACTGGGTAGCC	ref_1819_fdr	11	21	15	8	17	12	13	9	17	11
CTAATTTTGTTCCTGT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
TAATTTATAACTGCGG	ref_1819_fdr	22	13	22	22	13	18	30	16	18	19
ACTCGGGGCCCGTTCC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GGTTGTAACATGCTTG	ref_1819_fdr	2	2	8	4	2	7	5	5	3	2
TCATCAGACCGGCTGG	ref_1819_fdr	17	25	26	28	28	32	42	27	36	35
ACTTTTGGCGGTCCAG	ref_1819_fdr	6	5	14	7	3	4	6	5	5	5
GACCACGTTCAAGTTC	ref_1819_fdr	7	11	12	8	15	5	10	6	7	6
GTCTGGGCTCTTGCCC	ref_1819_fdr	1	10	5	5	5	3	1	6	3	1
CCAATCACCTCCAAAT	ref_1819_fdr	27	36	39	30	44	33	29	28	41	18
ATGTTATTACAAGGTT	ref_1819_fdr	125	106	151	115	77	95	88	84	113	103
CTTTACACGGTTGTTT	ref_1819_fdr	79	86	106	103	88	77	94	83	100	75
TGACAGGCGGGGCAGT	ref_1819_fdr	1	0	0	0	2	1	1	0	1	1
CCGACATTAAAGTTGC	ref_1819_fdr	4	4	9	8	17	9	16	5	16	10
TTTCTGTGAGAGCCTT	ref_1819_fdr	63	81	84	66	81	70	66	59	47	43
TCTTTATCGTAAGATG	ref_1819_fdr	14	14	23	14	6	13	21	17	25	18
TAGGTAACTTTGACTG	ref_1819_fdr	44	46	74	41	70	51	53	58	59	34
GCTTTGGGGGCGTGTG	ref_1819_fdr	82	162	123	118	122	111	149	102	164	95
CCGGCCGGGTGTCTGG	ref_1819_fdr	32	33	48	38	42	45	47	41	47	22
CATGAGACGGATTGGT	ref_1819_fdr	26	26	31	23	35	26	25	18	34	20
GTGTTGATTCACGTAC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCAGCTACTGAT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTGTGCTATTTGT	ref_1819_fdr	38	33	31	35	29	30	25	38	28	26
TTGGTATTACGCCTAT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GACATCGCCATCAATA	ref_1819_fdr	94	68	133	102	98	78	103	97	77	87
GCTCCACCTGCGATTA	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CCGTAGCTGTATTGCC	ref_1819_fdr	7	45	18	14	33	14	58	7	39	12
TGTCATGTAGTAGCTA	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGCCCCGATTGTG	ref_1819_fdr	33	40	53	31	45	31	32	26	39	21
ATTTTCATCTTCAAAG	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
TAAACCCGCATTACTC	ref_1819_fdr	125	89	111	96	105	103	96	92	94	69
ACACTAAGTTTTCTAG	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTCTGACATCTT	ref_1819_fdr	69	77	103	98	84	89	76	87	83	82
GAACGGATTGTTCTCC	ref_1819_fdr	77	78	86	101	58	52	69	65	70	62
TCGAGCCTAGGACCCC	ref_1819_fdr	4	3	3	2	5	3	2	3	8	2
CGGATCTGGCTCCTAT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GGACGTGGTACTGCGT	ref_1819_fdr	5	6	6	4	7	3	5	7	6	4
CGAACGGGTCAATGTA	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GAGGAGGTCTTTCAAA	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
AACGTCAGCTTAAAAC	ref_1819_fdr	23	23	35	36	18	24	22	27	27	31
TTACACAGAGAATCCA	ref_1819_fdr	43	29	42	18	32	35	29	38	31	24
TAATTCTAATGGCGTT	ref_1819_fdr	261	184	294	270	189	231	172	238	184	211
GCGCATCACTTAATGT	ref_1819_fdr	105	83	95	87	80	65	78	86	104	74
TAGTGTGCAGGAAATG	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GCCAATTTATTTGCTT	ref_1819_fdr	17	12	12	14	12	11	10	17	11	13
GACCTGTGGCCTGTTT	ref_1819_fdr	36	26	38	33	30	26	20	26	41	21
TACTTTTGTCCGGCGG	ref_1819_fdr	49	38	58	46	44	52	46	48	57	38
AGTTTCAGGGAATAGT	ref_1819_fdr	15	11	25	16	21	20	8	13	17	9
TCGCGTGAGGGCTTTA	ref_1819_fdr	32	42	46	58	37	42	43	62	55	37
CCCAGGCTTAACTGTA	ref_1819_fdr	35	30	30	29	35	35	40	37	50	24
GCACTTCGTGCACCTT	ref_1819_fdr	6	5	7	4	14	6	14	13	7	4
TGGAACGTTGACTTCA	ref_1819_fdr	12	11	14	9	12	5	16	13	11	9
AAAATCGCCTAAACCC	ref_1819_fdr	121	94	186	140	128	113	106	118	141	117
TAGGTGTTTTACTTAA	ref_1819_fdr	45	63	63	56	44	46	74	69	76	52
GGTTCAGAATCCGTAT	ref_1819_fdr	42	38	47	32	40	36	27	36	43	42
CATGTATCTCCTCCGG	ref_1819_fdr	15	23	12	19	23	18	21	14	24	17
TGTGGACTGTACTTGC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTAACCCGTCTTG	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CCCACCTCATGTCAAT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
CCGACATGTGCCTATA	ref_1819_fdr	235	260	341	291	282	223	293	254	297	186
CCGGGTTTCGTTGTAC	ref_1819_fdr	5	14	5	8	4	3	11	7	7	10
GTCCCCTTGTTGGTAA	ref_1819_fdr	28	45	32	41	37	32	34	32	39	21
AAAACCTTACTTTCCA	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
TTATACTTTAGTGGAG	ref_1819_fdr	12	13	20	17	10	10	23	15	13	15
GTTCTTTTACTGAAGG	ref_1819_fdr	118	123	144	120	152	117	133	134	135	113
GGCCAACGGTATTAAC	ref_1819_fdr	1	0	0	1	0	0	0	0	2	0
GCCATTACGTCGATGT	ref_1819_fdr	15	17	19	18	12	12	15	14	20	15
TTTGGACCTATGAATG	ref_1819_fdr	8	7	14	12	13	8	10	9	10	7
GCTTGCGATCGATCTG	ref_1819_fdr	17	23	21	15	17	13	13	21	20	16
TTCTAGTGAATTCTCA	ref_1819_fdr	0	12	3	7	2	3	5	9	5	3
TTCTGCAACCAAGGAG	ref_1819_fdr	9	6	11	9	16	6	7	1	8	9
CTGTTTTAACTCACTC	ref_1819_fdr	64	60	59	76	48	51	64	41	77	50
TCTATGAGTGCGTCTC	ref_1819_fdr	25	31	27	22	28	31	25	24	36	21
CGGGCAGTATGAGTCG	ref_1819_fdr	24	20	29	17	28	28	31	31	30	9
CCGATTGGAGGTTTCA	ref_1819_fdr	51	87	70	62	85	62	87	50	108	55
CACTCGAGTGGACCCC	ref_1819_fdr	24	31	27	21	34	6	35	15	30	18
GTCTACACCGCATATC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGTTTGATCCAAT	ref_1819_fdr	36	29	33	34	40	38	33	39	42	45
TTGGGTTGAAAGGCTT	ref_1819_fdr	37	43	48	56	35	47	31	42	37	42
CCGCCATCGAGATGTT	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
ATAGAGCGTGACTGAT	ref_1819_fdr	63	83	91	83	74	67	58	85	87	48
AGTACGATGGGCCTCT	ref_1819_fdr	62	60	104	80	80	72	76	64	62	68
GACTGACTTTGACTTG	ref_1819_fdr	103	106	121	91	85	112	89	79	101	91
CCGCCAGCGTGCGCAT	ref_1819_fdr	2	3	10	2	9	9	6	5	13	2
TAGTTTGTAGTACTTC	ref_1819_fdr	8	3	5	9	12	12	7	5	10	9
TTTATCATGCGCTATG	ref_1819_fdr	39	41	62	35	39	32	37	38	43	39
GCGATTCCCGCTACCG	ref_1819_fdr	5	6	12	10	12	5	9	7	7	11
CCATCCCCTAAGCTTC	ref_1819_fdr	68	66	77	66	57	65	48	61	70	56
TGTGTGGTTCACTGTA	ref_1819_fdr	66	56	88	100	104	79	93	95	86	66
GAGTGACAATGGTTTC	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTCTAGGCGATAT	ref_1819_fdr	6	6	9	1	2	6	8	5	12	1
AATTAGATGTCTGGGG	ref_1819_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCGTAGCTATGCT	ref_1819_fdr	1	5	7	16	4	1	8	5	8	3
GTCGGGTAATTGCTAC	ref_1819_fdr	14	23	27	24	12	24	17	20	21	21
GGGGCCATGCAGTGAG	ref_1819_fdr	0	0	1	0	1	0	1	0	0	2
CAATACTTATCACTCC	ref_1819_fdr	20	34	21	12	41	15	34	15	43	12
TTACTGCATTTCGTTG	ref_1819_fdr	44	35	43	31	32	44	24	25	37	35
GCTGGTTGGCTCCTAG	ref_1819_fdr	103	89	108	104	76	114	82	78	90	97
GTTTAGTCTACAAATA	ref_1819_fdr	26	26	46	29	29	33	29	27	40	30
GGGTTGTTTTATGGTG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AATTTGAGACCTTGAG	alt_2031_RC	18	23	19	17	20	16	29	15	39	12
ATGCTATAGGTGCCCT	alt_2031_RC	41	72	55	67	81	52	82	43	79	41
GCGCGTAAATCACTGT	alt_2031_RC	3	4	8	3	8	4	7	3	10	2
CACGGCTCTGGCAGAA	alt_2031_RC	5	5	4	2	6	4	8	4	1	1
GAGTTTAACTGGTATG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AAGGAGGTCCTTCACG	alt_2031_RC	22	29	26	19	31	18	29	7	23	24
CAGTACCCATCTTCTC	alt_2031_RC	25	49	29	28	63	31	49	16	67	28
CCTGCACTCTGCGGTC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TATTAGAAGCGATTCA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTTACTATTCTATCTG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GTTCACTGTAACCGCA	alt_2031_RC	1	1	2	2	1	2	4	3	0	0
TCCAAAGACAAGACGC	alt_2031_RC	16	40	26	15	30	20	24	16	35	17
GTCAGCGCCACATTCG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GATATTTTATCTAATA	alt_2031_RC	15	10	17	4	15	6	20	11	13	13
GCAAATGTTACCTTAT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTGCTTCGGGGCCGTC	alt_2031_RC	11	25	18	26	28	25	23	18	37	18
CAGTTATGCCTAAACC	alt_2031_RC	48	79	72	60	75	57	82	55	86	47
CGTTCGGGTGCCAATG	alt_2031_RC	11	12	8	10	21	7	23	5	14	7
GACCGTCGAGTGATAC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
ACTGCACGGTCAAATT	alt_2031_RC	31	31	35	25	31	21	38	21	35	20
ATCTCGTCGGCGTGTG	alt_2031_RC	36	60	52	41	58	37	66	43	56	32
TTAGTACGTCCGATCT	alt_2031_RC	6	9	12	6	19	8	15	5	9	7
ACAACAGCATATCCTG	alt_2031_RC	1	3	6	1	9	1	6	3	8	0
CACGACTTGGAGTTTA	alt_2031_RC	21	32	32	15	29	11	34	21	25	17
CCTTAGTCATATTTTA	alt_2031_RC	75	91	71	77	90	78	91	64	109	77
GGTAACTAAGCAAGTT	alt_2031_RC	24	28	35	23	38	23	34	26	44	18
CAAGGTTAACTCACTG	alt_2031_RC	47	62	57	47	50	40	53	39	77	53
TTTGAGCGAGTCTGTC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AGTAATGATCGAGCCC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
CCTACTTATTGCGCGA	alt_2031_RC	19	32	33	18	34	25	22	24	44	16
GAATGACCGCATGTGT	alt_2031_RC	54	78	56	45	63	56	70	41	58	48
TCATAAGAAGCGCCTG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GGGTGGAAAATAGTTT	alt_2031_RC	13	19	23	20	34	19	29	16	20	19
CTTCCTCTCGGAGGAT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
CACCGCCTCCTTTCTA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AGGAGGTAAATATTAG	alt_2031_RC	73	80	70	52	75	79	94	60	108	54
AAAACCCACTCACATG	alt_2031_RC	60	63	85	50	48	51	76	52	82	52
AAATGGTTATTACGCT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GGTGAGTTCCCGTTTC	alt_2031_RC	83	124	96	85	97	97	88	101	130	58
TGTGCGAATAAATACA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AGTAATTCAAAACTGC	alt_2031_RC	11	4	4	13	11	8	3	4	8	2
AGCGAAGTCGCACCTG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTTACCCAAATCTGAT	alt_2031_RC	77	111	68	77	115	62	117	73	100	68
CCTCTTCTTCGATTGT	alt_2031_RC	2	5	4	3	6	7	6	3	9	0
TAAGGAGTACTTCTGT	alt_2031_RC	10	19	15	8	20	12	11	3	9	11
GAGGGAGTTGCCTATT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTGTGCGGATTTTGTG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TACCCTGACTGGTGCC	alt_2031_RC	63	87	75	54	88	68	76	49	71	62
CTCGTTCAAGTGTCGT	alt_2031_RC	26	39	33	37	27	38	45	21	52	26
GTTTCCTGTTGGCGGC	alt_2031_RC	58	50	44	46	56	38	61	40	53	37
AGGATCGTTCGTGAGA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GTGTAAAGCATTCAAC	alt_2031_RC	7	10	6	11	12	5	8	5	9	7
TGGTTAGTATCTTGCC	alt_2031_RC	29	34	40	25	36	30	40	19	29	28
TTTGTTAGGTAGTCGG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
CGTGACTTCTCTTGGC	alt_2031_RC	29	42	43	29	32	27	51	36	44	22
GGCGTCTCACCATTGG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GACATACTCGTGAACG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AGGGTAAACCACTTGC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TCTAGTACAGGTCATT	alt_2031_RC	10	9	5	7	10	7	6	5	10	8
CGAGATCCGCACATGA	alt_2031_RC	0	7	5	0	7	3	4	5	9	4
AGTCGTTGCCGGGTGG	alt_2031_RC	20	19	30	22	17	20	25	28	20	20
AACTTAGGTTCGGCAC	alt_2031_RC	6	5	7	3	12	3	8	5	5	5
AGTAATTCGGCTCTGG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GTCTCTACTGACCCTT	alt_2031_RC	0	0	0	0	1	2	0	0	1	0
CCGCCTAGGCATTGGG	alt_2031_RC	68	88	77	69	88	80	88	87	102	67
GAGCGCTGGTTTTTAC	alt_2031_RC	29	48	32	21	27	33	37	30	41	25
ACCTTCTATTATTTGA	alt_2031_RC	4	14	6	8	7	6	13	6	15	3
CTTTTGGAGCGTCCAA	alt_2031_RC	9	6	11	6	13	11	10	5	6	8
TGGACCACTTCATCTG	alt_2031_RC	0	1	4	4	4	3	2	0	1	2
AAGGTCTCCCGATGGT	alt_2031_RC	106	104	95	104	101	93	134	87	132	98
GTTGACCTGTATCGGC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTTCAGGACCCCGGGA	alt_2031_RC	107	124	134	127	146	119	151	95	144	88
CTGGTCAAAGGTACGC	alt_2031_RC	50	58	50	44	42	37	70	23	63	29
TGTGGGCCAGTGTTAA	alt_2031_RC	2	1	2	4	4	1	4	3	8	0
ATCGCCAGCCAATCTG	alt_2031_RC	157	191	175	144	205	151	188	156	215	133
CACTCGAGTGGTCTAC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
ATCTGTTTTCAAAGTA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
CGTTATGGGCTATCGC	alt_2031_RC	19	23	22	26	22	19	23	15	29	22
CATGCTCGTTCGGACT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GTCAAGGTGGTTTCTA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GGTAAAGTGTCATTCT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TAAGTATCCCCCCTTA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGTATGGCCGAT	alt_2031_RC	15	14	24	12	11	10	14	21	15	8
GGTGGACCCTCGTCTT	alt_2031_RC	10	8	3	4	10	4	15	4	11	4
CACTCGAGCTCCTTTC	alt_2031_RC	17	25	15	20	26	21	31	11	20	25
CAAGCGGCTGAAGTTC	alt_2031_RC	3	7	7	4	7	2	3	5	6	3
TACGTGGCATTTCATT	alt_2031_RC	22	52	28	23	42	15	45	16	45	18
CTACTTATACGCGGCC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTGGTCGACCAGCAGA	alt_2031_RC	37	51	40	37	39	39	46	37	52	21
ACGTCTTCTCTGGCCC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
CTCCAAGTACTAAGGC	alt_2031_RC	3	8	5	4	7	1	9	6	8	12
CGGGGCTCTTACGGTA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GACTTCACCACTATTG	alt_2031_RC	2	4	6	9	5	2	6	2	6	2
CGAAGGCTGATTTTGC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTCGAACCACACTGTC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TGTGAGTCTGGCTAAC	alt_2031_RC	3	18	15	11	21	12	22	11	21	8
CCATGCGTATTAGCTC	alt_2031_RC	12	14	24	11	20	10	19	15	13	18
CATACATAGTTCTCTG	alt_2031_RC	1	3	7	4	6	1	7	1	9	2
TATCCCCTACCTCTTT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
ATATTGCTTCAGAGAA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TAGCGAGATTCGTCCG	alt_2031_RC	38	38	35	22	37	31	40	27	48	32
TGTAATGATCGAGCCC	alt_2031_RC	74	86	82	77	83	84	69	76	94	68
CATACAGCGGTGCATG	alt_2031_RC	15	11	14	7	21	19	17	14	14	15
TCATATATAAACGGGC	alt_2031_RC	18	15	10	12	14	7	11	14	20	10
TTAAGCTAAACTGCCT	alt_2031_RC	22	29	27	24	34	16	31	22	34	30
GCTATTTCACGCTCAC	alt_2031_RC	11	24	13	13	24	11	28	15	17	16
TCGGGCGATGAGGGTA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AGTATCAAGAGCATAG	alt_2031_RC	16	40	29	19	29	17	33	6	28	15
ATAAAAATGATGACTT	alt_2031_RC	26	15	24	27	19	14	24	18	19	17
AGGGCTTGTTTTGGTA	alt_2031_RC	73	85	60	56	90	47	80	50	78	49
CTCACGGTATAGGTTG	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TTCGCGGTCTTTTATA	alt_2031_RC	51	59	55	36	77	40	79	30	90	47
CTCGCAGGGACATCTC	alt_2031_RC	87	82	83	92	83	56	95	89	102	83
ACCCATAAGCAATGCT	alt_2031_RC	45	63	76	56	56	52	60	44	51	53
GTGTTCACTGGGTTTT	alt_2031_RC	12	21	15	6	26	11	17	12	20	7
GTAACCCTCTTGTCTC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GGTCATTTCTTATTTG	alt_2031_RC	54	66	51	51	74	57	72	35	75	46
GAATTGTTTTTACAGC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GTGATCGTCCTTCGCG	alt_2031_RC	2	5	1	3	3	2	6	4	4	2
AAATGGTGTCTTGTTT	alt_2031_RC	45	47	40	47	38	40	50	40	49	33
TTTGACTCTATAATGT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
AGTTTAAGTGGTTGCG	alt_2031_RC	5	10	5	6	4	2	17	6	10	7
GGATTTAAGCGTCTTG	alt_2031_RC	6	9	13	8	11	9	16	10	12	8
GGACGTGTAGAGGACA	alt_2031_RC	4	7	6	10	5	9	14	6	17	4
TGGTAGTACGCAGAAC	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
GGCCTCATGGGACTGT	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
CGTATTCATGCGACCT	alt_2031_RC	65	98	80	65	96	66	70	50	79	80
GTGGCTGCTAATTGTT	alt_2031_RC	16	16	11	15	20	16	19	6	12	12
GAATGAGTTTTCAGTT	alt_2031_RC	47	69	45	49	62	53	77	44	53	41
TGACTTAAATTTCAAA	alt_2031_RC	44	85	64	58	91	45	80	47	79	55
ACTTTCGATTGCGGTT	alt_2031_RC	55	71	74	73	84	67	79	68	73	52
GTCGAGTCATACTAGA	alt_2031_RC	0	0	0	0	0	0	0	0	0	0
TAGGTGATTTCATTTG	alt_2031_RC	3	6	10	3	10	6	5	10	15	6
TGGTTTCCGCGCCATA	alt_2031_RC	66	78	70	64	67	83	70	54	72	60
CGTCAGGCCATTAGTG	alt_2031_RC	22	34	27	25	23	18	45	15	49	14
TAGTTTGACTGAGGCT	alt_2031_RC	1	2	3	5	6	1	7	1	2	3
AGTTCAGTGGACTACA	ref_5814_new	12	33	25	22	41	16	48	13	47	14
GTCACTTTAAACGGGT	ref_5814_new	61	127	66	55	96	54	108	63	135	63
GACTGCGACAGCAAGT	ref_5814_new	0	0	0	0	0	0	0	0	0	0
GCTGTCGGGTGTTTAA	ref_5814_new	2	21	5	2	11	5	14	3	14	2
TCAATCCGTACCGAAA	ref_5814_new	11	22	15	11	31	15	31	15	25	6
GGAGTGCCTTCGCACA	ref_5814_new	0	0	0	0	0	0	0	0	0	0
AACTAACTTCCTCCAG	ref_5814_new	71	164	75	67	123	77	164	81	141	75
CCCCCCACCCCATATT	ref_5814_new	24	58	28	25	68	18	55	25	67	33
TAACGAATAGTGGTGT	ref_5814_new	2	11	8	4	7	7	14	3	10	9
TGGTTCTTGGAAACGG	ref_5814_new	9	22	11	4	20	11	20	7	12	3
ATCTATCGGGGGAACT	ref_5814_new	49	85	49	34	101	41	91	47	76	42
TTGTACTCTATTACCT	ref_5814_new	10	47	14	16	30	12	33	5	37	8
TTTGGCGCCCTTATAT	ref_5814_new	6	7	4	6	16	7	13	10	15	4
ATTGCTATCGGTTAAA	ref_5814_new	100	225	119	89	202	106	249	85	239	80
TCTAAAGCCTGCGCCG	ref_5814_new	12	21	11	5	21	12	38	6	32	6
AATGCGCGATCACCTG	ref_5814_new	6	19	11	7	21	15	26	10	20	9
AGATTGATTATGCGGT	ref_5814_new	7	5	9	5	7	5	10	3	8	5
ATACTTGATGGTCTAA	ref_5814_new	9	23	11	22	24	14	32	6	23	6
TTCACTTCGTCAATGT	ref_5814_new	8	20	7	7	12	7	15	7	21	12
GTACATCGTGAGAATG	ref_5814_new	11	10	5	15	15	4	12	8	13	7
TTAACTTCCTAGTTGC	ref_5814_new	18	30	16	7	30	13	26	12	22	10
CTCCGGTGGGGAGATT	ref_5814_new	1	2	0	2	0	1	7	2	1	0
TCTTATGTTCTTTTAA	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CTATATCAGTTCGATA	ref_5814_new	6	13	9	7	18	6	30	4	28	1
TTTGGCTGGTCGCCCC	ref_5814_new	14	16	8	10	9	6	10	3	17	5
TAAGGAACAGCTGACA	ref_5814_new	9	19	24	9	30	6	20	5	27	6
AATCATACTATCTTCT	ref_5814_new	25	40	29	15	43	22	39	19	37	21
ATGCACTTCAGGATTG	ref_5814_new	7	13	9	5	20	10	10	2	19	4
TTGATTTCGATGAAGG	ref_5814_new	3	3	2	5	7	0	3	2	3	2
ATGGACAACCCCTTGT	ref_5814_new	21	43	19	7	39	15	29	12	40	11
ACGTTGATCAAATCTG	ref_5814_new	24	30	30	25	64	22	44	17	59	20
ATGGCTGCGTAGCCGG	ref_5814_new	45	66	53	59	57	33	63	37	66	45
CATGGATTCTTGTTTG	ref_5814_new	0	0	0	0	0	0	0	0	0	0
ACCTCCTGCTGGCGTG	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CACAAGAACGTCCAGA	ref_5814_new	12	31	17	14	31	13	32	17	30	12
TCAGTGAACTCGATCG	ref_5814_new	20	38	12	17	30	24	28	24	38	19
CGCCTGGTGTTCATAG	ref_5814_new	13	37	33	11	55	22	48	13	52	19
CACTTACCTATTTGGC	ref_5814_new	2	27	3	1	13	1	14	4	11	0
GATGTCTATAGTTATC	ref_5814_new	29	63	28	20	78	29	46	29	74	33
ATTCGTATTTATACGT	ref_5814_new	68	143	91	79	142	77	147	66	120	75
GTTATTTTGGCAAGTT	ref_5814_new	0	0	0	0	0	0	0	0	0	0
ATTTCTTGATCAACAG	ref_5814_new	142	275	177	142	302	146	308	126	291	98
CTTTCGGAGTCTAGCC	ref_5814_new	76	97	55	53	127	54	108	60	137	43
GTTGTACCGTTATTGG	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CAGTAACTAACAGCCT	ref_5814_new	4	17	0	5	12	2	12	2	12	3
CAATTGTGTTCCTCGC	ref_5814_new	25	49	27	26	51	20	53	16	40	22
TCCTGGTCCGACCATT	ref_5814_new	12	44	12	18	45	20	32	8	49	15
TAATTAGCGTCACTCT	ref_5814_new	0	0	0	0	0	0	0	0	0	0
TAACTTGCATGTCAGG	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CTAGCCCTTCGGTCAA	ref_5814_new	0	0	0	0	0	0	0	0	0	0
GCTCTATTGTTACAAA	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CGATGATGGACCCCGC	ref_5814_new	53	170	79	60	178	55	193	48	203	53
TTGAGTACCATCGGTT	ref_5814_new	7	11	5	7	13	5	11	3	11	4
ACCCGTCTCATCATTG	ref_5814_new	5	18	8	6	35	6	23	9	26	6
GTATCCGGCACTCTTT	ref_5814_new	10	31	16	15	30	12	25	6	33	16
TCCTGATATTCGTAAA	ref_5814_new	0	0	0	0	0	0	0	0	0	0
ACTACATAGTGAGTGA	ref_5814_new	3	5	3	4	4	0	7	5	11	4
TCTGTCTTAACCTATA	ref_5814_new	13	18	12	3	26	18	22	16	27	11
TTGTTAGTCAAACCTC	ref_5814_new	40	99	59	36	88	56	101	37	94	43
AGCGCCGCCCGCCCAC	ref_5814_new	21	41	25	24	49	15	54	21	51	22
ACCAGTTGTAAAACCT	ref_5814_new	8	31	18	18	44	17	35	15	46	22
CGCTTCTTCATGGATT	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CTCTTCGACTCCGGAT	ref_5814_new	65	85	66	40	94	41	96	41	110	50
AGTTATCTCGGTCCTC	ref_5814_new	65	121	86	70	125	78	165	42	129	60
CGCGCTGCTTCTTTTC	ref_5814_new	13	10	3	7	13	11	10	0	8	5
ATCCGAGACACGTGGG	ref_5814_new	20	35	23	11	26	14	29	12	35	19
TGTTGCCCTCTTCTTG	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CTATTGGACGTTCATG	ref_5814_new	5	22	5	5	13	5	14	3	7	6
TATATTAGCTTTCGTA	ref_5814_new	7	17	12	10	17	12	24	7	15	7
CCTGCCACCTCGTTGA	ref_5814_new	0	0	0	0	0	0	0	0	0	0
AAGGGCGGGGAAATTT	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CTACTCGGTATCACGT	ref_5814_new	5	16	7	3	13	5	8	2	8	7
CGCCGCTCGGAATGTC	ref_5814_new	10	38	11	13	40	9	31	19	39	17
GGCTTAGGTAAGGGGC	ref_5814_new	11	22	12	8	18	14	20	13	26	10
TAGGGTCTTAATGGGG	ref_5814_new	60	155	77	65	166	48	118	56	139	71
ATTAACACATAACCCA	ref_5814_new	37	76	57	36	81	39	102	33	90	34
GCGGGGTATCAATACA	ref_5814_new	39	84	49	35	68	43	75	32	89	38
GGATCTATAGGCTGGG	ref_5814_new	3	4	1	2	5	1	6	1	2	4
TGTTCGATCCTTTTGA	ref_5814_new	16	18	14	8	31	10	31	9	20	11
CAGTGACATGTAAGCT	ref_5814_new	0	0	0	0	0	0	0	0	0	0
TAGGTTAGCTCAAGGC	ref_5814_new	0	0	0	0	0	0	0	0	0	0
ATTCTACCCACCCTTG	ref_5814_new	0	12	5	1	8	6	7	2	12	1
TCTATCAGACCGTAGC	ref_5814_new	13	26	15	10	35	7	20	8	23	10
TCTGTCTGTAGAGCAT	ref_5814_new	7	11	7	6	10	3	13	6	7	4
GATCAGAGGTTTTCGC	ref_5814_new	0	3	1	0	4	1	1	3	4	2
CATCCGGGCGGTGGAA	ref_5814_new	41	59	52	38	73	31	76	28	67	36
CTTCTCTAAAGCGTAA	ref_5814_new	13	29	12	10	24	10	22	18	36	11
CCGTCTCATAAATTGG	ref_5814_new	8	37	19	11	32	10	55	10	36	17
CACTCTTATTTACGCA	ref_5814_new	20	37	33	25	50	25	49	23	52	19
TCATTATCGGCACCGC	ref_5814_new	14	47	30	26	47	30	47	28	47	16
TGTCCGTCACTTCCAC	ref_5814_new	6	9	5	4	11	12	14	8	19	7
CGGCACCCGCAATGTG	ref_5814_new	9	12	15	9	19	10	29	10	20	5
TACTGTACACTTTGCA	ref_5814_new	64	129	76	54	150	70	145	60	150	54
GGCTATGTAACCGCGT	ref_5814_new	7	18	18	15	19	15	12	13	23	4
TGGGCTTACTTAATTC	ref_5814_new	2	2	4	2	2	0	1	1	11	4
TTCTCGATTGTCCCCT	ref_5814_new	0	0	0	0	0	0	0	0	0	0
CTGAACAAATGTCCGG	ref_5814_new	5	14	12	15	13	9	15	2	25	8
TTCTATGAAAGCAATT	ref_5814_new	29	43	41	19	56	26	74	11	82	23
CTATGTATCTCGAATT	ref_5814_new	9	8	6	3	12	3	7	2	15	7
CGGCTGCTTAGACCTA	ref_5814_new	0	4	0	1	2	1	2	1	1	0
CAGCATCATTTTGGAG	ref_5814_new	2	12	8	9	8	0	9	4	10	6
CTAATTACGGGGTCCA	ref_5814_new	8	24	15	11	27	16	26	9	28	9
TCACTCCAGTCGTGGC	ref_5814_new	9	89	7	24	74	6	89	6	81	12
TTATCTCTCTAAGCCT	ref_5814_new	3	7	7	1	5	4	5	1	8	1
GAGACTGATTGCTAGT	alt_5199_fdr	7	39	16	7	36	13	36	20	41	17
GCTACTTTATTTCTCC	alt_5199_fdr	65	180	65	82	149	71	129	66	145	65
CTCTGCTTAACAGCAT	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
CATGCCAGTTGTATAT	alt_5199_fdr	223	590	258	210	595	237	598	213	651	215
ATTGAGGATGCGGTAT	alt_5199_fdr	3	16	9	9	20	5	16	8	11	8
TGGGGTCCCAGACTAG	alt_5199_fdr	20	55	35	33	50	22	57	27	52	23
CATCACATGTAGTACT	alt_5199_fdr	95	204	130	112	238	114	258	86	293	100
CACGACGTGGAGGGGT	alt_5199_fdr	8	12	3	2	12	7	14	3	17	9
TCTAAAACCCGCATAG	alt_5199_fdr	6	10	5	6	13	11	8	9	21	2
ATGGGTGGGTAGTTGG	alt_5199_fdr	4	27	7	5	18	11	15	7	18	7
TGATTGATTTATACTT	alt_5199_fdr	16	139	27	14	113	9	109	22	128	13
TAATTTCTGCTCTTGA	alt_5199_fdr	28	59	34	23	76	34	72	24	53	28
GCTCCATTGCGACCCG	alt_5199_fdr	24	64	28	25	66	18	56	27	80	16
GGGATTAAAAGAAATT	alt_5199_fdr	10	28	18	9	25	14	29	15	34	11
TTTCAGTAATCCTGGT	alt_5199_fdr	14	26	17	9	27	9	26	13	23	10
ACTTGGCCAGTTCGGA	alt_5199_fdr	13	48	18	12	44	14	45	9	50	8
ACCTTCCGGCAACGCA	alt_5199_fdr	48	92	48	46	106	26	91	32	86	46
TCCAGTCCATTATCTT	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
CGTGTGCTTGCATTGG	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCGTGGCCGAAG	alt_5199_fdr	104	228	132	104	256	107	254	96	298	90
TTTTCGCCCTACGCTG	alt_5199_fdr	15	35	23	19	25	9	20	11	32	8
ATTTGCCGTGATTAGG	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
TTTACCCATGGGATAT	alt_5199_fdr	10	29	9	19	19	4	31	10	35	19
TCTCTTAAGAGCTATC	alt_5199_fdr	19	44	20	14	43	25	35	18	58	33
GCAGCGGGCCGGGTTG	alt_5199_fdr	80	219	110	87	221	91	239	77	231	77
TTAACGCTATTCATGC	alt_5199_fdr	3	11	11	7	13	5	10	6	7	5
TGGTAATGTCCTGCGT	alt_5199_fdr	56	108	55	44	115	58	128	59	120	46
CATATGTTGCCTTTCA	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTTATCATGCTG	alt_5199_fdr	4	17	11	1	18	4	8	10	9	4
TTAGTGGCGAGAGCTT	alt_5199_fdr	16	53	43	15	36	26	58	18	61	14
TCATGAGAATGGTCCT	alt_5199_fdr	90	184	100	71	174	85	189	100	203	79
TTGGATCTACCAATTC	alt_5199_fdr	9	17	9	8	22	11	28	5	18	3
GTTACACTCCTGTACA	alt_5199_fdr	7	107	11	5	117	5	106	8	120	1
GCTTCGCCGACCCTCC	alt_5199_fdr	4	40	8	8	15	7	34	8	26	4
CGATGAGTTTACTCAT	alt_5199_fdr	11	15	4	7	17	12	17	5	20	3
TATTACTTAACAGTTG	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTGACCCTATGTC	alt_5199_fdr	44	97	81	35	112	45	117	39	134	40
AGTCCTGACTCTCTAA	alt_5199_fdr	8	11	4	6	15	5	5	5	6	4
GTCCCTGACCATCTTC	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
CAATTCATCAGTCTAT	alt_5199_fdr	11	42	20	8	46	13	54	18	37	21
CTTCAGGAGTATATCT	alt_5199_fdr	13	26	17	12	29	11	29	7	27	15
TTCAGCGATGCAGGGT	alt_5199_fdr	29	79	39	40	72	24	90	44	86	21
CTATTGTCCTCAACAC	alt_5199_fdr	4	3	6	2	9	2	6	1	2	4
GCTTTGATATCTGTCC	alt_5199_fdr	20	42	21	32	43	16	51	25	53	18
ACTATCAAATACTCGA	alt_5199_fdr	1	11	5	15	15	4	20	6	23	4
CTAGTTTGACTCAGGA	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
CGGGAGATTAAGATAT	alt_5199_fdr	7	43	14	18	26	22	42	19	46	14
CACGTAGATTTTAGAA	alt_5199_fdr	20	44	11	21	51	14	55	20	42	18
GTCACAATCCGCTGGC	alt_5199_fdr	7	12	6	3	19	14	20	5	16	3
CATCCCGTCATTCGCT	alt_5199_fdr	0	8	6	5	14	3	15	3	19	2
GTCTCATTATGATCGG	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
TTGTATCCTAACATCC	alt_5199_fdr	6	15	9	11	23	9	11	5	17	13
GCGATTCTTCTAGCGC	alt_5199_fdr	2	4	5	1	7	1	5	1	5	0
CAAGGAGTACCGGTAC	alt_5199_fdr	1	3	2	0	4	0	0	1	3	0
CTGGAAGGTTACTTCT	alt_5199_fdr	3	18	12	9	16	1	13	5	18	8
ACGGTGATTACTCAGA	alt_5199_fdr	4	7	6	7	8	4	9	1	7	0
AGTCACGGCACCGCAA	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCCATTTTGACTG	alt_5199_fdr	17	42	27	15	31	21	35	15	25	17
CTAGTTTTATCTTTGA	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
CATGCTAGTTGTATAT	alt_5199_fdr	0	0	0	0	0	0	0	0	0	0
TCGGAGAGGGGCACAA	alt_5199_fdr	15	22	8	11	20	7	15	9	20	4
TTGTTCGAATTTTGGT	alt_5199_fdr	25	59	26	31	58	21	53	25	62	17
CAAGTGCCTTCGTTTT	alt_5199_fdr	17	26	15	21	24	17	38	12	38	17
TGATCCATTTTACCTC	alt_5199_fdr	2	2	1	0	1	0	1	0	0	0
TCGTTATCGCACGCTA	alt_5199_fdr	3	20	11	6	18	10	20	8	20	5
ATTCTACTGCTCGCGT	alt_5199_fdr	13	18	21	9	24	10	22	13	18	8
GCTCCAGGCACTAACA	alt_5199_fdr	12	22	8	10	10	5	21	9	19	7
GCCGAATGAAATTTCT	alt_5199_fdr	1	3	0	0	0	0	2	3	4	1
AACAAGACGTTGAGTG	alt_5199_fdr	27	88	37	29	90	34	81	29	92	30
CCACCCCCCCGCCGTA	alt_5199_fdr	6	30	3	3	33	7	45	3	46	4
CAGTAATTATCATCCG	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TGATCGGATTTTCGAT	alt_5933_new	22	52	22	25	39	19	48	18	45	23
GACACCTCCGCGACGG	alt_5933_new	31	32	46	20	44	16	62	20	51	29
GCGGTTTGTCTCAACT	alt_5933_new	14	35	15	19	33	17	33	20	22	13
GAGAGACCATAAATTT	alt_5933_new	0	0	0	0	0	0	0	0	0	0
AGATTGCCCCGCGTGG	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GGAATTGAGTGCACCT	alt_5933_new	13	21	23	12	32	19	16	12	32	11
CACAACCATGTTCCAG	alt_5933_new	0	0	0	0	0	0	0	0	0	0
CGGACATACTACTTCT	alt_5933_new	12	9	4	0	5	9	7	9	5	5
GCCGAAACATTCGTCA	alt_5933_new	39	68	52	34	80	49	62	48	81	49
TCCTGCATTTTTTCTA	alt_5933_new	43	61	54	41	59	39	69	28	79	48
CCGCCTCGGCCCTACA	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GATCTACGCCGCTTTT	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TTTCTTACAATAGGTC	alt_5933_new	9	10	14	11	20	6	16	10	16	13
GTTTACCTCTTAGGCC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TAGGGACTGTTCGTGG	alt_5933_new	9	25	20	5	15	7	21	12	22	10
TTACTTACGTGACATA	alt_5933_new	1	17	3	4	15	0	19	3	12	0
AGACCGTGATGCCTTG	alt_5933_new	26	49	37	30	39	23	37	25	52	23
ATAGATCGGCTATCTT	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GCAATATATTCGATTC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
ATTCTGGATGTTAATC	alt_5933_new	9	14	4	17	17	6	18	6	10	7
TTTGCGCTTTAACATT	alt_5933_new	82	164	73	90	162	65	194	73	170	72
TGGTGGACCGTAGCAA	alt_5933_new	8	19	13	5	10	12	22	11	16	12
GTTATGCAGTACCTAG	alt_5933_new	0	7	1	1	2	6	3	2	3	0
CTTCTGCAAGGTGGTA	alt_5933_new	93	151	114	82	139	94	148	109	152	78
ACAGCCCGTAGGAAAT	alt_5933_new	16	43	28	12	33	17	43	16	31	12
TTGATGCTGCAAACTT	alt_5933_new	12	16	13	9	16	17	24	4	23	9
GGGCTGGTCATACATG	alt_5933_new	9	12	8	4	10	7	13	8	17	1
TAGATAAAGATGCCTA	alt_5933_new	21	37	27	20	41	20	36	13	30	16
TATGCACAGTCTGGTA	alt_5933_new	38	52	38	23	50	32	62	29	77	29
TATTTCGTGTAACCTT	alt_5933_new	42	45	43	30	48	43	51	40	42	28
ACAGCGGGGTATCTGG	alt_5933_new	0	0	0	0	0	0	0	0	0	0
CGCGTGTTGCAAATCG	alt_5933_new	14	16	10	14	20	17	25	5	29	7
AGGACATACGACCTCC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TTCGCATAACTATTTG	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TACTTGATGAGCAAAT	alt_5933_new	53	89	45	61	101	46	79	52	92	57
TAGTATACTTGCCCTT	alt_5933_new	35	71	36	40	72	38	69	48	53	24
TAGTTCTACGGTAGCT	alt_5933_new	18	20	26	20	26	15	26	22	27	11
AACAGTACGGCCATGA	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TGGTCGTGCGGTCGTT	alt_5933_new	9	11	11	10	4	10	15	5	13	9
GGTCGATCAAATATTT	alt_5933_new	5	7	5	4	5	3	4	3	8	6
AACCTTTGTCGACGCG	alt_5933_new	6	16	2	10	14	4	17	8	22	11
CGGCAGCAAGGAGAGC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GCGAAGAATTCTCCTT	alt_5933_new	162	214	231	162	212	189	217	179	230	164
CGCCCTGGACACGGCA	alt_5933_new	16	26	15	24	21	23	31	11	24	12
GGGTCATACTGACGGC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
CAGGATTCAGCCATTA	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GCCTGTGTTTTCTATT	alt_5933_new	17	17	25	16	14	7	11	7	19	13
TGCGTTCCCCGGCGTG	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TATTGGTTAATGTCAG	alt_5933_new	43	53	33	27	57	26	53	33	59	33
GCTAGGTATGTCTCTG	alt_5933_new	47	91	57	45	67	41	95	29	94	45
ATGTTTCGCCGCTAGT	alt_5933_new	5	19	7	9	11	2	12	9	6	8
AGTGCAATGATTTCGC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GGTGCGTATCTGTGGG	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TGGACGTCTTTGCTTA	alt_5933_new	19	38	19	12	26	14	29	20	35	8
TCCTTTACTACGGGTC	alt_5933_new	30	37	53	32	57	30	56	37	47	27
GCGTCACACATAGCGG	alt_5933_new	11	12	8	8	9	10	20	6	14	9
TCTTTTTGTATCATAT	alt_5933_new	9	15	12	10	25	17	30	9	14	12
TTGTTGAAGTGGGCTT	alt_5933_new	34	42	29	20	31	15	48	15	40	15
ATATGGCTTATCCACA	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TCGGAGTGCCACTGCC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
CCCTACAAGTCAGGTC	alt_5933_new	7	15	12	8	21	9	15	7	27	7
CTAAGCCCAGCTCTCA	alt_5933_new	23	48	29	22	51	33	32	28	42	13
CGGACGTTTTAGGTGT	alt_5933_new	7	9	2	1	5	4	4	5	10	7
GGTTTTGGAGATACGG	alt_5933_new	2	5	2	8	2	2	8	4	11	6
TTGTTTCGTTGGAACC	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GAAATGATCGGCCTGT	alt_5933_new	0	0	0	0	0	0	0	0	0	0
GCCAAGTTTCCACGGG	alt_5933_new	19	46	22	20	37	29	45	20	58	34
GAAACTGTCGCTTCCA	alt_5933_new	47	81	46	42	74	35	79	31	59	38
TATTGGCCGACGATAA	alt_5933_new	39	72	44	37	87	25	76	40	74	31
ATCAGCAAACATTGAG	alt_5933_new	38	67	40	32	52	24	56	27	69	38
CCGCCTCGGGCAAAGA	alt_5933_new	0	0	0	0	0	0	0	0	0	0
CCTGTTCCGAGTTATT	alt_5933_new	7	7	9	7	10	3	19	6	13	11
GTGTAACATAAGGTCG	alt_5933_new	2	12	10	5	11	3	3	5	12	1
GCTTCTGAGCGTGAGG	alt_5933_new	3	6	4	3	3	1	8	5	1	4
TCGGGTGCATAGTCCC	alt_5933_new	0	1	0	2	1	1	2	0	1	0
TTTTACTTCACTGTGA	alt_5933_new	0	0	0	0	0	0	0	0	0	0
TATCGCTAATCATATC	alt_5933_new	52	83	51	46	59	54	80	40	91	40
GACCGTATGCTTGGCC	alt_5933_new	14	13	8	15	20	9	26	7	11	10
GTACTTCCGGTACGTG	alt_5933_new	30	70	30	31	67	26	64	26	71	30
TGTGGCAGTTGGATGT	alt_5933_new	5	8	12	5	11	10	10	6	11	5
TGCGTAACTCCCTCGG	alt_5933_new	1	16	3	6	18	0	14	4	16	2
GCTGCTAATATTTTTT	alt_5933_new	36	64	55	46	59	38	54	39	59	30
TTACCCCAGGTTGATT	alt_5933_new	6	4	5	3	11	2	15	5	11	5
AGACTGTACTGCGCCC	alt_5933_new	2	3	2	0	3	1	2	2	2	0
GAATTCTGCCTTGGTT	alt_5933_new	12	15	13	15	17	7	16	14	22	10
CTTGCGCGTTCTCCGG	alt_5933_new	1	16	8	3	12	5	15	8	5	4
TGAGGGTTCCTTGGTC	alt_5933_new	9	16	6	4	9	9	16	5	8	8
TGTTTCGGTGGCGCCA	alt_5125_reverse	8	2	4	9	0	6	5	1	1	2
TAACACATATATGCAC	alt_5125_reverse	35	26	32	48	19	35	44	47	31	41
TTACAGCAATTCTTTC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TCCATCCATTACTGCC	alt_5125_reverse	16	15	37	22	42	23	22	27	24	28
CATCCCGTTTTTAGGC	alt_5125_reverse	43	38	41	30	43	34	35	24	39	37
ATTGAACGTGGCATGT	alt_5125_reverse	27	21	38	37	24	40	33	44	28	35
GGTAAGGTCCGCTACT	alt_5125_reverse	84	70	103	92	69	87	76	92	60	63
GTTTAAGTTGTACAGC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
ACAAGCTCAAGTATTG	alt_5125_reverse	128	76	190	147	101	141	97	104	100	126
TTTCCTCGTTAGCCTA	alt_5125_reverse	288	226	362	322	243	281	184	281	196	285
GTGCCTTAGAACTCTC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
ACGACGAGATTTTTTT	alt_5125_reverse	81	48	76	65	45	81	41	64	54	88
TCCGCGTGCGGACGTC	alt_5125_reverse	22	15	22	15	14	11	14	9	14	7
GTTGTGCCATGATCAT	alt_5125_reverse	73	57	71	50	58	45	44	55	57	49
TTACCTTAGCAAACAG	alt_5125_reverse	65	48	75	63	45	57	36	68	42	51
GAAGCGCTATCTGTAA	alt_5125_reverse	10	18	14	14	3	7	6	27	14	8
TGTCTAAGTACCATTA	alt_5125_reverse	32	23	47	34	20	24	29	37	30	38
ATGATTCAGGCCCGTT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
CCATTTCATTTCATTG	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGCTAATCGGTCA	alt_5125_reverse	135	113	189	160	111	131	123	168	137	129
GCTCGAAGCCGGGGTT	alt_5125_reverse	26	30	34	39	23	19	16	26	22	25
CCCAATCGACTTGATC	alt_5125_reverse	10	12	11	9	12	5	25	13	18	8
AATACGGTACCTTGCT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGTTTTGGGCGAA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGATTACAGATCT	alt_5125_reverse	40	27	44	41	26	41	43	46	37	36
GAGGTAGATGCTTCTA	alt_5125_reverse	6	1	6	2	3	1	2	6	1	2
CACGTCTCCACTGGAT	alt_5125_reverse	3	2	14	4	6	4	4	10	4	6
TCGTCTGTATTATGTT	alt_5125_reverse	40	31	50	44	44	30	32	43	35	24
TGAGACTTCTTAGTCT	alt_5125_reverse	43	17	14	23	18	23	23	17	17	23
TAAACTGTAATCTGTC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
AGAAGCATAGCCATCG	alt_5125_reverse	66	58	123	83	45	106	68	97	52	88
TGGCTTGCCTGGACGT	alt_5125_reverse	119	66	122	98	77	112	58	120	64	112
TTGGGAATTCGTCATA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGGTATCTGCACT	alt_5125_reverse	54	44	69	56	43	44	53	41	62	60
GGTGGGTTTGGGCGTT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
CGATTTGAAAAGTGGG	alt_5125_reverse	73	38	81	80	43	56	36	54	44	45
GTTGTTACCAGTACTT	alt_5125_reverse	74	63	97	90	59	88	66	57	68	52
AATGTTTGGCTTGAAC	alt_5125_reverse	46	37	49	31	46	42	32	29	40	49
GGAGCACCTCACGTTC	alt_5125_reverse	90	60	128	96	84	86	83	111	65	102
GGTATACGTATGTGTA	alt_5125_reverse	25	18	29	19	13	23	17	28	20	21
GTTTCGTCCCGATGAT	alt_5125_reverse	36	34	65	44	46	54	47	39	33	46
TTATATTTACTACGCC	alt_5125_reverse	92	84	123	96	75	82	67	84	81	80
TTAAGTCAATCTACAA	alt_5125_reverse	29	21	41	32	22	37	19	33	21	32
ACAGTATATGTCCGAG	alt_5125_reverse	11	7	25	19	12	16	7	16	13	10
GCCCTAATCTTTCTCA	alt_5125_reverse	47	37	40	46	36	50	36	37	35	39
GTAGATGGCCAAGGCT	alt_5125_reverse	37	30	58	41	27	49	30	39	40	54
CCTATAGTTATACGAC	alt_5125_reverse	21	17	24	23	11	27	17	24	18	33
CACTTGAGCCTACTAT	alt_5125_reverse	2	9	10	16	6	11	7	7	8	13
CGCCGCTCACCGGTCC	alt_5125_reverse	57	52	112	71	76	72	61	70	54	70
GTTGCGAGGGGTGCGC	alt_5125_reverse	40	29	48	39	18	34	18	34	23	26
TTGACCGTATATACCG	alt_5125_reverse	43	29	49	42	34	40	30	35	40	29
GCTGGTCAAATATCCG	alt_5125_reverse	54	27	46	31	28	37	37	33	35	35
TGCACAAGCTCACCTG	alt_5125_reverse	48	54	61	47	48	38	38	48	45	35
GGCGGCGCATACCTCT	alt_5125_reverse	13	14	36	20	12	23	6	25	10	25
TGTTAGCTGATTAACT	alt_5125_reverse	45	25	56	43	25	52	33	49	43	46
GATTGTCAGTCCAAGC	alt_5125_reverse	161	116	210	204	143	170	145	141	137	141
TCGTATAGCAACCCGG	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
CAATCTTTTTGACAGT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTGTGTTGTGTAA	alt_5125_reverse	53	49	93	67	51	65	57	66	66	44
TGCTTCAACGAAGGCG	alt_5125_reverse	12	10	14	9	7	18	10	19	8	25
GTTTTCGGTTGTGGTA	alt_5125_reverse	1	4	7	1	6	5	2	0	1	5
TCTAACATGGGCCCTA	alt_5125_reverse	106	64	122	141	79	115	83	111	71	92
ATTACTCGGAGTAAAA	alt_5125_reverse	23	19	35	19	15	21	24	14	26	31
TTTATAACTACCGAGG	alt_5125_reverse	68	48	110	108	50	72	54	72	43	70
AACTTTGTCTTCATGA	alt_5125_reverse	143	97	182	131	92	140	103	142	108	135
CACGTTTGCAAATCAT	alt_5125_reverse	75	57	102	103	72	106	70	96	88	77
GGGTCCCAACGTGCAT	alt_5125_reverse	45	33	58	50	37	34	33	42	18	28
CTCGTGGGCCGTCCAG	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTAGTTCGGGTTA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTACGTTGTCCTTCCG	alt_5125_reverse	28	45	31	42	61	24	47	28	56	33
CTTCGCGGGCTCGTCT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCCTCCACCTATT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
CTTTACAAGAATCGCA	alt_5125_reverse	210	117	230	194	120	189	171	191	163	183
GCCATTAGACCCAACT	alt_5125_reverse	2	0	1	2	1	2	0	3	1	1
TATGATCCGCATACGC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TAATATAACTATCGAT	alt_5125_reverse	78	42	89	73	52	73	59	65	49	51
AAATTTTCGCACGCGA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
AGGATGGCCGCTACGT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTGTAGTTGTATTATC	ref_2378_RC	57	59	53	44	65	46	78	32	60	41
ATTCGGCGGAGATTAG	alt_5125_reverse	39	23	45	39	41	39	24	38	25	44
AAAGCACATATTTGTC	alt_5125_reverse	2	7	9	3	4	4	2	6	3	4
TTTGCGATGCTCATAA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTTTCCATATCGC	alt_5125_reverse	21	22	50	39	25	40	22	29	28	23
GCTTAACTACGGGCAG	alt_5125_reverse	113	89	142	141	102	120	105	122	89	118
ACTTTATAAACGGCTT	alt_5125_reverse	68	42	62	58	44	56	62	55	36	45
TAAGTTATTTTTAGTA	alt_5125_reverse	42	27	45	35	14	34	24	36	25	33
AGTTCTTTTATTTCAC	alt_5125_reverse	34	26	30	34	11	29	15	33	23	38
CCGATGTGCGATGTAT	alt_5125_reverse	13	3	15	10	12	7	11	9	5	9
TGGCATCAAAGATTTT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGGACTCTGCCCC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TATATTATGCCGCCGT	alt_5125_reverse	7	6	10	5	4	6	8	11	7	2
CGTGTTGGGTTCACCC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
GTTACGTGTGGGCTGC	alt_5125_reverse	21	30	41	24	28	28	27	41	23	28
TACTCTTTTGATTATT	alt_5125_reverse	97	32	100	78	43	74	56	82	52	89
TACACAGCTTCATATC	alt_5125_reverse	30	32	46	34	24	34	22	33	29	26
TACGGATTACCACATA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
GATCATCGCACTCTTC	alt_5125_reverse	160	85	185	141	97	147	97	161	114	152
CTAGGGTTTGGTGCCA	alt_5125_reverse	17	16	20	20	13	22	17	18	11	9
CCAGGCGCTAAGCCTT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
GACCTCGCCGTGTGAA	alt_5125_reverse	9	5	6	10	5	10	4	10	1	4
CCTAGGATTAGAACAT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
CAGCTGCTCTTTATTC	alt_5125_reverse	89	86	125	93	95	102	72	66	102	100
ACAGGACCTCTTTTTA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
GGCCATCGGTAGCGAG	alt_5125_reverse	8	5	6	6	2	11	7	5	2	7
AGATTGAACAACCGGC	alt_5125_reverse	93	56	121	92	67	84	84	71	85	92
TTTTTTGTGATAACCA	alt_5125_reverse	376	225	454	382	226	352	249	317	289	350
AGTTGATAGTCGGCAG	alt_5125_reverse	140	109	174	134	122	135	108	120	117	131
TTTTTAGGGTTCTACT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTACCGGGTGCCT	alt_5125_reverse	60	38	84	78	63	67	65	67	61	84
CTCTTCTATAAGAGTC	alt_5125_reverse	51	41	64	42	30	37	45	49	39	56
TGTCTATTTCCAAGTG	alt_5125_reverse	84	52	101	92	67	62	51	60	70	65
TCACGGTTAGCCCCAC	alt_5125_reverse	37	17	33	37	23	26	25	30	18	26
ATGGTGCGCTTAAGTG	alt_5125_reverse	44	26	52	43	43	50	44	40	45	52
CAGACTGTGGTACCTC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TGAGCAGGTACGGATA	alt_5125_reverse	27	14	33	35	19	25	24	18	22	34
GTACGTCTAAGGCTTC	alt_5125_reverse	66	44	66	63	47	45	45	50	42	53
TCTTCGAACAACGATA	alt_5125_reverse	105	61	149	110	60	107	59	123	91	92
GCTACTGGGGTGTACG	alt_5125_reverse	37	36	64	50	60	56	53	39	39	43
AACGGAATTTATCTCT	alt_5125_reverse	37	44	61	31	38	49	53	42	50	47
GAGTGTGAGTCCCGCT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
CACTGAGACCACGCCG	alt_5125_reverse	75	60	79	83	61	77	63	75	67	90
ATTTGTACGACAACTT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGTGATGGTCCGC	alt_5125_reverse	9	5	7	17	10	11	11	10	8	12
GAGAATGGTTGCTAGA	alt_5125_reverse	34	16	33	26	18	27	23	24	22	29
AAGGTTAGGAGGAATG	alt_5125_reverse	30	12	27	31	19	28	21	27	20	26
GCCGTATTTAGCGTGG	alt_5125_reverse	373	288	407	332	275	362	295	345	331	313
ACACGCTGCAATTCTG	alt_5125_reverse	6	6	9	7	10	10	7	11	9	9
TGCATTCATATTATGA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TGTAATGACTGCGCAT	alt_5125_reverse	5	4	4	3	5	7	3	4	4	4
CGTGCAGATTGATCAA	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGCAACTGTTACC	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTCACTGTGTTTT	alt_5125_reverse	238	219	296	235	197	201	184	188	208	215
CCATCTTTTCGCGAAC	alt_5125_reverse	118	71	127	101	72	121	79	104	81	97
CCACTAATTCCTTTGT	alt_5125_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGGTGAGGTCCGT	ref_6091_new	28	48	33	27	46	34	49	23	46	21
ACTCGACGTTTTGGTT	ref_6091_new	22	39	37	30	43	30	51	19	52	16
TTAGGTGCCGACGACG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
ATCGAACAGATAAGCT	ref_6091_new	9	8	2	6	6	6	6	1	8	3
GGTAAGTTCCTCATCG	ref_6091_new	525	671	642	551	722	523	701	522	729	560
TTGCTTATCTAAGTCG	ref_6091_new	4	13	3	3	2	11	5	8	3	3
GTGATCCGAAGCGCTC	ref_6091_new	54	91	84	82	88	57	89	43	86	43
GAGCATTTCGTGCTCT	ref_6091_new	27	20	26	16	29	10	15	14	24	16
CCCTGTCCCGTACTTC	ref_6091_new	12	10	9	11	10	12	13	12	19	11
GGCTGGGAACTGTGGG	ref_6091_new	6	10	7	11	11	4	18	9	10	10
TCTTTTTGCATTGTCT	ref_6091_new	71	92	73	55	65	47	86	29	85	47
GTTACTTCAGACCTCC	ref_6091_new	6	3	3	6	12	7	4	0	7	3
TCCGTTTGCCAGTTAT	ref_6091_new	18	32	26	22	32	24	30	21	29	17
CTGCCAAATCGGGGAT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
GTAACATGTTGCCTGA	ref_6091_new	0	0	0	0	0	0	0	0	0	0
AGAACGTCCCAGCATA	ref_6091_new	10	38	18	13	33	18	29	20	24	20
CGGCCGGCCTGTCCCG	ref_6091_new	83	198	79	67	164	64	184	58	220	47
AGAATGCGGCATCTTA	ref_6091_new	7	7	3	6	8	8	11	7	6	5
ATTCAATTAGGGTGGT	ref_6091_new	29	19	39	33	33	22	40	25	50	27
CGTATATGGGTCGGGG	ref_6091_new	79	84	82	92	102	71	100	77	116	66
CGCGAATAGACTTAAG	ref_6091_new	32	31	39	19	31	28	47	20	56	23
GCTCTTCTATGGAACT	ref_6091_new	41	52	52	38	54	22	54	34	51	32
TACAGTTCATTCATCA	ref_6091_new	74	94	91	63	96	82	103	66	122	60
TATCGACTACCACCTG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TGGTTGAATGTCTATT	ref_6091_new	29	28	37	35	51	33	47	29	46	22
TCAGCAGAGTACACCA	ref_6091_new	0	0	0	0	0	0	0	0	0	0
AAGATCGGCGGTATAC	ref_6091_new	42	46	34	49	46	43	54	38	76	36
CTTATGGGAAACAGTT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
ATCTTAAGTTCCAGCT	ref_6091_new	9	17	18	12	25	8	20	4	13	12
TGTGCATCTTTTATTT	ref_6091_new	17	20	23	20	24	19	24	16	25	13
TTTAGAACATCATCCT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
GCGTGCTCAATGTATT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
CCTCTTTTACTGTTCT	ref_6091_new	3	5	5	6	3	4	6	3	12	1
TTGCCAAATGAATCGT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
CTGTATCATCTTAGTG	ref_6091_new	190	292	232	205	300	181	327	201	327	176
TTGTGGATTTATACAA	ref_6091_new	28	47	59	28	49	35	58	30	52	35
CTGATTCAGTAATATC	ref_6091_new	15	16	17	10	15	9	23	10	22	17
CTATGTCGGTCGGGTT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
CTTTATACTAATTACG	ref_6091_new	33	41	26	18	34	20	32	21	24	15
TTTATTTGTTGGTCCC	ref_6091_new	2	15	5	9	7	14	6	7	14	4
TTCTTCTTGAAAGATC	ref_6091_new	1	2	3	0	3	2	0	0	1	2
TCGGTATTGCGTTCAG	ref_6091_new	34	40	26	24	43	17	48	26	40	22
CTACACTCTGCGGCAT	ref_6091_new	26	49	19	16	45	19	47	16	40	23
CAAATTGTTTGGTTCC	ref_6091_new	0	0	0	0	0	0	0	0	0	0
AGGCCCTGGACTCGGC	ref_6091_new	0	0	0	0	0	0	0	0	0	0
GCGTGTGTTTTTGACG	ref_6091_new	73	119	104	79	107	73	109	65	110	71
TTTAGGACGTTGTTGG	ref_6091_new	2	4	0	2	1	3	0	1	3	1
TTCCTGCGACCTCATG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TCATTGGTTTCCTCGA	ref_6091_new	9	12	15	8	19	15	13	6	8	6
CTCTAAGTGTTTTTCC	ref_6091_new	1	4	3	0	2	4	3	2	0	3
CTTAGTCGGTTAGCGG	ref_6091_new	9	13	14	5	15	7	13	8	10	6
CCCTTCCTTATATTCA	ref_6091_new	32	60	65	46	52	36	65	28	75	39
GTCGCACAGGCGGATG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
AGGGCCTGTGGGTACT	ref_6091_new	14	21	20	16	28	11	17	13	22	18
GGGGTAGAACGTCCTT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TCTCGGCAATGTCCTA	ref_6091_new	61	81	102	70	78	66	92	44	88	50
GCCACAGCATACCGTC	ref_6091_new	45	88	51	54	100	50	84	36	83	32
CTTATATTCCTGTGGT	ref_6091_new	10	23	22	18	24	8	16	10	19	20
GTCTCCGTAGTTGTTC	ref_6091_new	100	130	126	113	142	91	140	100	139	98
GACTTAGCGCTTCAAA	ref_6091_new	10	7	16	15	16	8	15	9	12	5
ACTCACGGATCTTGTT	ref_6091_new	25	40	34	27	44	22	35	18	38	23
CGACTACCGAGCTATC	ref_6091_new	52	59	49	35	74	47	59	33	59	39
TTGTCACTGACATGCT	ref_6091_new	27	46	36	45	66	31	52	38	65	17
CTGTATCATCTTAGAG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TCGCCCATCCTTTATT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
GTGTATAGTTGCGACT	ref_6091_new	1	1	1	3	5	3	4	1	5	1
ATCGTTACGTTTTTAC	ref_6091_new	31	31	25	18	21	20	19	19	32	20
CAAATACCTTCAGTAT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
CTGGCGCTGGCTCGTG	ref_6091_new	0	0	0	1	0	0	0	0	2	0
TGGGTCCATGCAGCAT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TACAAGATTTGCTGCG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TCCTTACTCATTTACA	ref_6091_new	64	115	75	86	143	73	174	52	154	64
AGGGTTTATTCATTCT	ref_6091_new	33	65	52	36	71	33	52	43	55	36
CGCGAATACTTAGGTC	ref_6091_new	19	23	14	19	18	13	21	15	33	11
TACTACTGGCTGGACT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TAGTTTGCTAGGGCGT	ref_6091_new	1	7	2	1	1	0	2	0	1	0
GCTGTGGGATCACGAA	ref_6091_new	0	0	0	0	0	0	0	0	0	0
CGGTACCTTTTTTCGG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TGTACTCGTCCTCAGT	ref_6091_new	7	5	2	8	15	11	10	4	16	3
GGGTCGTAATTAGTGA	ref_6091_new	13	27	21	22	23	14	25	14	32	18
TAGTACGGGAAAAGGA	ref_6091_new	14	14	22	10	15	8	16	5	8	14
TCTGATCGCCACTTGG	ref_6091_new	91	103	98	79	100	71	125	68	120	64
CGGGGACAGCTCGCAT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
ATAGGGCTACGTGATG	ref_6091_new	20	35	17	6	25	14	27	17	42	15
CAACGTTAGTAAACCC	ref_6091_new	3	8	7	2	8	1	12	5	12	3
CAGTGATTACCTTATT	ref_6091_new	15	39	23	14	19	15	22	15	29	13
TGTAATAAGAGTGTTT	ref_6091_new	9	20	7	8	18	9	12	8	11	8
TGGTAGAGTAACAGTG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
GCACTCACCCACAATG	ref_6091_new	10	24	9	7	26	7	39	15	45	7
TGATAGATGTCTTAGT	ref_6091_new	17	41	37	16	34	26	40	20	36	16
TAATTTTAAAGTATAG	ref_6091_new	24	38	22	23	35	23	40	29	28	29
TTCGCACCAAACTCCA	ref_6091_new	9	48	15	13	48	11	40	6	40	9
ATACGCATCCTGCTTG	ref_6091_new	80	103	106	96	142	106	166	95	115	94
GCATTAGCTATGCACC	ref_6091_new	57	77	70	51	117	49	99	57	94	38
TTGTGGTCGGTATAGG	ref_6091_new	23	39	17	24	31	23	38	35	33	18
TTCGTCTCGTATCCCA	ref_6091_new	13	17	12	6	12	11	19	4	16	15
TCGCACGCAAGTACGG	ref_6091_new	22	13	17	19	24	22	28	24	24	17
TTTTTTCTAACGTACT	ref_6091_new	64	93	71	73	95	58	90	63	95	58
CAAACGCAATTATGGC	ref_6091_new	45	56	65	45	37	44	67	35	52	32
ATTTAGCATATTACGG	ref_6091_new	0	0	0	0	0	0	0	0	0	0
CTTTACTGTTAGTTTA	ref_6091_new	14	39	20	19	40	15	36	19	39	17
CATAATCCCCGAACTT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
ATCGACTACGTATTTT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TGGGTGGGCCATATCT	ref_6091_new	44	65	48	38	55	38	65	31	67	39
TAAGTTGTTTCTCTTC	ref_6091_new	0	0	0	0	0	0	0	0	0	0
ATCTACCTCAAAGGTA	ref_6091_new	12	18	19	5	23	14	12	13	10	7
GTCGCCTAAGTTTCCG	ref_6091_new	12	17	15	11	17	12	18	8	13	12
AATCTTTTTACCGAGT	ref_6091_new	5	11	4	11	10	8	15	4	8	10
AGTAGTAAACGAGACC	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TCGTAGAATGTTCGCC	ref_6091_new	112	218	168	172	290	129	265	126	271	125
ACACAACTTCGAGTCC	ref_6091_new	14	13	16	14	23	16	14	16	16	12
CGACTTGCTATATTAC	ref_6091_new	8	5	7	3	14	4	6	4	8	5
GCATTTCCTTCCGCCC	ref_6091_new	6	3	8	5	8	11	3	3	4	2
TTTATGCGCAATACGC	ref_6091_new	0	0	0	0	0	0	0	0	0	0
AGGTTATGGCGTCCCC	ref_6091_new	0	0	0	0	0	0	0	0	0	0
CTCGCAGAAGGCTGTT	ref_6091_new	20	76	32	16	77	17	72	14	61	13
CTTACAAGATACAAGG	ref_6091_new	4	12	11	12	7	2	11	5	11	11
CTAGGTTTCTTAAATT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TTACCTCGCAAGTTAC	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TAGACGCCGTCAACCG	ref_6091_new	32	46	35	20	61	26	43	11	46	18
TTGAGCTAGCGCGGAT	ref_6091_new	12	19	15	14	30	16	20	13	21	22
CGTGGAATTTAACTCG	ref_6091_new	6	11	18	12	18	9	10	11	18	9
GTCGAGTAGGTTTTAA	ref_6091_new	3	1	5	1	6	3	10	3	7	3
TTAATTCTCGAGATGT	ref_6091_new	0	0	0	0	0	0	0	0	0	0
TGACGTCTTTTTGCTT	ref_6091_new	10	4	3	5	2	2	4	7	4	1
GTTTCCAGTTCACAAG	ref_6091_new	28	26	36	26	34	26	23	25	34	12
ACAGTCTCTGGACTGT	ref_6091_new	16	23	27	16	27	30	35	11	43	11
CTCCTCAGAACATATT	ref_6091_new	13	33	13	2	42	6	37	8	30	13
GCGTGTCTTTACCAGA	alt_1246_RC	9	8	10	15	17	16	13	8	7	14
CCAGTCAGGTGCCTAG	alt_1246_RC	14	10	8	10	9	8	16	8	27	13
CTAAACCCACCCATTT	alt_1246_RC	64	32	50	41	35	37	34	42	34	36
AGTTCTCGATATCACT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GATCTGCTGCCCCTAC	alt_1246_RC	130	84	168	127	80	116	96	119	87	107
TTCCAGTTTGTTGGCT	alt_1246_RC	175	123	254	190	154	179	156	184	190	142
TTATCTCTGGGGTTGT	alt_1246_RC	28	36	49	38	25	36	22	50	13	31
TCGTCCCGGAAGTAAG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CCTTTCTCTGTCTCCC	alt_1246_RC	29	67	73	49	87	33	76	42	82	66
GGCCGATACAGGTTCT	alt_1246_RC	94	74	139	101	77	111	89	106	79	91
TTTTGTCCCACGTTCA	alt_1246_RC	15	5	12	17	8	10	7	14	13	11
ATCCATAGCGCGGCTG	alt_1246_RC	30	21	33	35	35	29	32	36	34	18
GGGTGAACGCCAGATG	alt_1246_RC	121	90	149	117	96	106	105	120	94	109
GTACTTTTAAGCTGAA	alt_1246_RC	95	72	150	129	91	100	90	114	91	134
TTCAGTCTTTAGAAAC	alt_1246_RC	32	19	53	22	22	34	25	26	37	31
AAACATTTGTACGCAC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CATGCACCGGGTTGCC	alt_1246_RC	32	41	30	45	41	33	36	32	26	25
CGTATCATAGAGCTAG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CTTTGTGATTCACTAC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
AAGTACACGGGGGTTA	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ACAGGGACGCTCTCCT	alt_1246_RC	1	0	3	1	0	2	1	0	2	1
CACTGTACATACAAAT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
AGCAAAGCGCAAAAGA	alt_1246_RC	44	31	61	37	30	46	36	37	28	44
AGAGTCCGTTCGCCCA	alt_1246_RC	36	43	60	35	24	47	39	54	37	47
GGCTCTACACCAAGAC	alt_1246_RC	54	40	53	33	50	36	38	37	36	41
GAACTGATTGCTTCGT	alt_1246_RC	24	7	18	18	22	21	14	28	13	19
GCCAGTGGACACATGA	alt_1246_RC	77	91	118	102	80	123	75	86	67	76
CCATATAATCGATAGA	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ACGCTATATCCACTCC	alt_1246_RC	19	9	18	22	7	12	14	10	16	15
CATTTGTACATGGCTG	alt_1246_RC	23	14	36	24	27	20	17	26	24	33
TTAAGGTGTGTTCGGG	alt_1246_RC	21	12	24	27	17	14	20	16	12	13
CATATGGTTATCTGGT	alt_1246_RC	16	10	26	16	12	27	15	24	15	19
ATGGGCGTAACTTCAA	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CAGGTTCTCGGTGGTG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CTATAGAGGGTGGCGG	alt_1246_RC	6	6	15	4	5	5	7	2	13	5
AACAATCCGTATAGGA	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ATTCTTTTACAGGACT	alt_1246_RC	82	71	121	100	84	96	79	93	75	80
TATGGGCTGTCAATTT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
AGAGCGAATACATTGG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CCTAGTACGTTGTTTA	alt_1246_RC	49	24	50	58	28	40	35	49	26	39
GCTCACGTGTTCAGCA	alt_1246_RC	18	11	25	13	13	13	9	14	17	11
AATACGGTGGTGAGAC	alt_1246_RC	85	58	95	101	62	101	64	55	69	68
CGCTGCCGTCGCCGTC	alt_1246_RC	47	47	52	54	59	52	64	40	48	38
TTTATTGTGGGCTGAC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ACACTTGTGGCATGAA	alt_1246_RC	81	55	68	82	56	67	48	84	53	61
GGTCAGGAAGGACTTT	alt_1246_RC	35	30	43	41	19	36	27	39	28	34
ATATAATTTGCCGATT	alt_1246_RC	10	11	18	10	13	17	14	19	10	7
GGCTGTCTGCATAACG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ACCAGTTAGCGCGCAG	alt_1246_RC	7	6	5	4	7	3	5	6	5	5
CCCTTTAGTCTGCTGA	alt_1246_RC	14	14	19	13	9	23	15	12	9	7
CTATCGTACCCGTAAA	alt_1246_RC	9	8	15	14	9	12	12	11	11	11
GATATCTCCCAGCAAT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ATGTGGGATTATCGGT	alt_1246_RC	1	0	3	0	1	0	0	1	0	1
CTGTCCGGTTCCTTCT	alt_1246_RC	85	53	75	90	57	65	44	91	62	61
GCCATTCACTCCGTTC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ACTATCATGTTTCGAA	alt_1246_RC	33	26	66	41	45	47	44	30	46	44
CATGTTTCCTTGACTC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CATTCACGAGTGCATG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
TATCTTTGTGGGTGGT	alt_1246_RC	24	24	38	29	14	34	21	26	17	24
TTGGCTTGGTAATTGC	alt_1246_RC	155	132	175	162	108	175	122	137	131	152
ATGGCTCTACCCGGAA	alt_1246_RC	130	106	169	73	85	130	97	131	102	148
ACCATTCCGATTTCCC	alt_1246_RC	157	100	177	158	120	113	120	134	127	124
CTTTTTGCCTTCGCAG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
TCGGGGGGTCCATATC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
TATGCCGGTGACTTTG	alt_1246_RC	116	62	126	114	70	100	94	109	81	95
CATTTCGAGTCCTTCG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GAGCAATGTGCAAAAA	alt_1246_RC	50	32	72	71	44	64	40	60	52	55
TCTAACCATTCCAGTG	alt_1246_RC	0	0	0	0	1	0	0	0	0	0
TGTTCGATGTGTCCGG	alt_1246_RC	61	67	106	55	48	63	50	60	51	61
CTATAGAGTGTACCCT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GCGCTGGAACTTGTCA	alt_1246_RC	38	35	39	45	27	49	43	33	46	33
ATTTCTGGTTGGTTTG	alt_1246_RC	54	54	75	59	54	76	65	63	59	61
CTCGACGGGAAGAAGG	alt_1246_RC	112	70	125	107	72	95	78	101	93	105
CGGCGGGTTGTGGTGT	alt_1246_RC	75	63	86	102	63	78	84	83	69	91
CTTTGCAGCTGTTGAC	alt_1246_RC	17	13	32	27	18	21	20	19	23	16
TATCACTGTTGGAAAC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ACGGTCTCTTAAGAAA	alt_1246_RC	40	30	52	33	25	37	30	34	29	42
TCCGGCCGTTGGTCTG	alt_1246_RC	22	23	23	25	12	13	21	9	13	10
CATGATACCGGTTCCT	alt_1246_RC	118	93	182	137	74	119	104	98	97	111
GGTATTCTCTAAGAAA	alt_1246_RC	57	60	92	85	56	66	63	63	65	69
ATTAAGTAGCGTCTAC	alt_1246_RC	5	5	14	3	3	3	4	5	4	2
CTGGCATGAATAGATA	alt_1246_RC	43	30	49	36	29	40	30	38	36	41
ATGGTTATTCTGGGTA	alt_1246_RC	19	14	12	12	17	13	14	18	14	9
AATATTCTCGACTTGG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ACCCTATTTGGATACT	alt_1246_RC	48	29	50	53	38	38	38	37	39	28
AGTCCATCCCTTGCCC	alt_1246_RC	96	89	117	90	82	73	96	81	71	81
AACAGGGCATCACAGG	alt_1246_RC	17	14	38	23	14	28	18	15	17	17
CCATTTCGGTCTTCTT	alt_1246_RC	5	1	5	9	4	2	4	2	5	6
AGGCAAAGGTTTCGGT	alt_1246_RC	29	18	32	20	22	28	16	16	11	25
GCATTTTGGCATGCGA	alt_1246_RC	29	19	39	32	23	24	21	37	24	20
GGCTCCTTCAAGTCGC	alt_1246_RC	43	40	54	48	36	43	39	55	45	37
AGAGGGCGGACGGATC	alt_1246_RC	135	63	146	132	70	132	67	124	96	124
ACTGGCGTATAATCGC	alt_1246_RC	33	31	37	31	26	23	21	37	30	22
CCTCGAGACTGGCAGT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ATCGCCTTGACTCTAC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CAGGCTTTTTCAATGG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTTCCTCCTAGG	alt_1246_RC	202	138	247	226	138	206	132	238	150	176
TGCGTGATGCGATATA	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GGGGTGGTTCTGCCAA	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
TGTTGTAATGTCCAAC	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
TTCTGATATTCTACAC	alt_1246_RC	29	11	31	21	18	17	14	27	16	10
GTGCACGTGTTAGTTG	alt_1246_RC	13	7	21	20	18	7	12	15	16	13
GCCTAAAAGATTTCGC	alt_1246_RC	13	16	20	22	27	21	16	15	23	14
GCTTCTCAGAAACCAT	alt_1246_RC	34	16	31	25	20	20	17	22	21	16
CTCTAGTTTGATCCTT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GCCCCAGTTCTGTCCT	alt_1246_RC	75	41	87	74	46	72	44	66	44	66
TCACCGCCACCATCGT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
CGAACCCAAAGAGAAG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
TATCTTGTCTGACGTA	alt_1246_RC	6	4	9	6	10	9	2	4	3	13
TCAGCTCAGCTTAGCG	alt_1246_RC	37	21	34	30	43	34	29	22	28	20
AGTGTTCCATTATATA	alt_1246_RC	29	16	20	12	23	17	14	18	20	19
GGCTATTCTAGCATTC	alt_1246_RC	4	8	5	5	5	7	8	6	4	8
TGTAGATAAATAAACA	alt_1246_RC	54	20	42	35	29	49	32	44	22	45
ATTTCTATTGTACTCT	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCCAGACATTCT	alt_1246_RC	49	43	49	46	32	47	40	42	49	52
GGGGCCGTCAGGTAAA	alt_1246_RC	118	80	131	135	82	111	70	109	100	111
TACTCTGTCACACGAT	alt_1246_RC	53	37	83	60	51	47	33	59	35	50
GCTGCTACCCTGTACC	alt_1246_RC	103	114	165	131	107	138	102	121	109	111
CTTCTGATTTCTGCAG	alt_1246_RC	0	0	0	0	0	0	0	0	0	0
GCTTAACGATGCGACG	alt_1246_RC	141	89	155	120	98	139	116	110	110	102
CCCTCCTGGTACGCTA	alt_1246_RC	38	41	65	47	48	43	57	44	59	59
TTCGAAAGTTTTTGAC	alt_1246_RC	117	118	146	121	88	108	86	90	111	106
GTCTTAAAGGTCATTT	ref_3513_missing	46	74	57	43	70	62	53	48	69	52
TAGTGAAATTGATACA	ref_3513_missing	0	0	0	0	0	0	0	0	0	0
GATTTGCGGAAGCCTT	ref_3513_missing	23	36	19	22	31	24	33	20	27	34
ACTTTTTAATTGCTTA	ref_3513_missing	0	0	0	1	0	0	0	0	0	0
AATGCGGTAACTCTTC	ref_3513_missing	30	39	40	31	37	38	41	34	34	33
CAACTTTTGGTTATTG	ref_3513_missing	31	62	46	30	37	36	62	33	60	36
TCTCTTAGCACGTTTA	ref_3513_missing	13	16	22	20	21	14	17	19	17	11
TCCCAGCTCTCACGGC	ref_3513_missing	80	95	98	108	125	76	110	77	130	70
GCCAATTGGATCCGAC	ref_3513_missing	25	34	23	16	40	15	38	8	33	15
TCTTTTTAATTGCTTA	ref_3513_missing	143	210	167	167	200	135	196	158	222	151
CTATTAGTTAATTGCA	ref_3513_missing	41	54	67	35	52	38	58	51	84	28
ATGGGTGGGCGCACAT	ref_3513_missing	17	15	13	17	15	13	29	15	17	12
TTCATACCGTAATCAG	ref_3513_missing	0	0	0	0	0	0	0	0	0	0
CACGGGTACCAAGTGC	ref_3513_missing	0	0	0	0	0	0	0	0	0	0
CTTCGTCTTTCGAATC	ref_3513_missing	0	0	0	0	0	0	0	0	0	0
CCACTTTTAAGGCTAG	ref_3513_missing	15	23	18	15	16	16	14	8	18	9
CAGGTGCGTCCTACGT	ref_3513_missing	0	0	0	0	0	0	0	0	0	0
TCGGTATTTCCTCACC	alt_3513_missing	226	240	344	225	291	236	292	226	292	259
GTTCGGACGTATTTAG	ref_3513_missing	111	143	111	73	140	111	97	93	128	97
CGTCCGTCGACCGATC	ref_3513_missing	16	18	12	11	19	15	31	13	45	18
CGCGCACATCCTCGCA	ref_3513_missing	13	15	6	13	29	8	26	9	19	9
GTCCTTCATCTTGGCA	alt_3513_missing	123	150	177	126	118	130	165	116	160	126
ACCATCAAGCATATCG	ref_3513_missing	0	0	0	0	0	0	0	0	0	0
TCGTAACTGTATATAT	ref_3513_missing	75	82	78	55	80	61	69	65	97	59
TCCGAGTATTGGTCAT	ref_3513_missing	85	123	113	92	129	103	122	101	115	91
CGTTTTTAGCTAACAT	ref_3513_missing	15	37	26	28	34	27	34	10	36	29
TTTTAGGCAATAGCCC	ref_3513_missing	18	27	27	26	28	18	22	18	28	14
GCCACGTGGAGCCGTA	ref_3513_missing	44	34	47	32	44	38	49	33	45	25
CTTCACGAATACCACC	ref_3513_missing	40	43	59	43	47	41	49	42	58	32
TTATTTAGGTTTCTCC	ref_1903_RC	5	8	10	5	11	9	9	5	6	6
GGGCGTTCACAGAGCA	ref_1903_RC	16	18	14	21	28	16	21	10	24	12
CCGCTTTTATTGTTAT	ref_1903_RC	25	53	47	23	56	34	52	19	55	23
CAATAGTACATACTCC	ref_1903_RC	1	19	2	1	20	1	24	1	22	1
GTCAGCCAGTCCAATG	ref_1903_RC	72	14	111	82	12	58	22	67	23	65
GTTTCTGCCTGACCCA	ref_1903_RC	8	8	11	5	11	5	9	3	13	8
CTCTCCAAGGGTGTCG	ref_1903_RC	53	178	63	55	198	52	197	55	176	44
GACCCATATTCTGTAG	ref_1903_RC	4	5	3	7	5	7	10	2	7	4
CCCCCCTACACCTTAG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
GAGGATTCCCGTTGAT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
TTTGTGTATCGAGCAG	ref_1903_RC	19	17	11	7	6	13	14	8	19	12
CTCACTTAGTGTGTTG	ref_1903_RC	3	7	3	0	2	6	8	2	6	3
ACGTCAAGCTAAATGC	ref_1903_RC	13	10	11	7	13	6	17	11	11	10
GAGCAAACCAGTCTAG	ref_1903_RC	17	22	20	13	19	18	22	11	25	21
TTTTATCCCCTAGCTG	ref_1903_RC	45	50	63	41	68	34	76	49	54	35
GATGTCAATTACCGTC	ref_1903_RC	91	104	113	73	122	101	147	94	124	75
GTTACAGTCCACTATT	ref_1903_RC	29	38	22	26	42	14	32	24	29	26
AATCTCGGGAATTTAC	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
TCGGGACTATCGGGAG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
AGGATCCCCTTTTTAT	ref_1903_RC	50	60	59	32	80	53	60	46	59	47
GGTGTAGGGTAATTCA	ref_1903_RC	23	30	37	21	29	39	38	25	45	27
ATCCGAATCTCTTCCT	ref_1903_RC	47	50	53	42	52	46	69	48	40	40
TGCTCTGCGCCCGTTA	ref_1903_RC	34	54	40	33	39	44	36	39	39	22
GAGATAGGTTTGCCTC	ref_1903_RC	107	147	123	109	159	124	168	87	145	91
CTGTTGGACTTTTTCG	ref_1903_RC	7	14	9	14	20	7	15	5	14	8
GCTGGCGCGTCTATCA	ref_1903_RC	40	50	37	28	41	39	58	37	53	49
CGCCAGTTTCCTTTAC	ref_1903_RC	4	8	10	6	21	3	12	2	13	18
AGAAAGGCTCAACTAG	ref_1903_RC	41	48	77	36	52	49	59	52	57	33
CGGTCGGCCACGAACG	ref_1903_RC	15	60	21	18	78	17	66	11	67	11
GACTCAACTGTACCGA	ref_1903_RC	16	31	23	11	33	8	33	14	20	23
TCAATCCTGGGCATTC	ref_1903_RC	34	51	51	39	30	24	41	30	40	24
GTCGGCCAATTACTTA	ref_1903_RC	38	43	51	33	36	31	47	29	33	26
CTATGGGCTCTCGCCT	ref_1903_RC	12	21	15	11	20	9	24	16	16	15
TTCGACCCGTAGGCCC	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
TCGAACCCTGCTACGC	ref_1903_RC	36	38	47	28	35	34	44	20	30	41
CGTTTGACTCTTGCCT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CCCATTCTCGCGGACT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
GCGCGCAGATTCGAGG	ref_1903_RC	62	58	59	63	50	55	83	71	68	74
CTGTTTTTAATGGCCT	ref_1903_RC	118	107	131	97	101	112	138	104	137	91
CCGTTATGCAATGGGT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CAGGTACTCGCTTAAT	ref_1903_RC	6	5	5	1	5	3	2	5	11	2
TATATGCTCCTCCAAT	ref_1903_RC	5	5	10	3	2	5	3	1	1	3
TTTCGGCGAGACTGAG	ref_1903_RC	87	64	78	76	96	55	117	72	110	69
CGCTAGATGTCGGGGG	ref_1903_RC	188	185	193	175	211	172	199	177	185	152
TAGTGTCTACTTATAC	ref_1903_RC	5	5	2	2	3	1	6	4	8	5
ATACTGCGGGTTAGAA	ref_1903_RC	4	5	5	10	7	5	13	2	1	4
TACACTCTGGTCCTTT	ref_1903_RC	10	33	32	26	19	20	25	15	31	20
TGGGAACTATCATGGT	ref_1903_RC	17	21	24	21	47	14	20	25	30	13
GTTAAGAAAGCCTACA	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CCCAAGGTCTTCACGA	ref_1903_RC	29	29	23	29	22	22	34	24	50	26
GGGGTGCCGTTGTTGA	ref_1903_RC	8	7	9	12	9	5	7	5	7	4
GATCGAAGTGTTACTA	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
GCTACGCACTTGCCCG	ref_1903_RC	16	28	39	18	39	14	22	20	38	17
AATATGTCCGGGCTTG	ref_1903_RC	9	13	6	10	9	6	12	14	7	12
TTAGACCTTGCGACCG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
GCATCAACATGTCATG	ref_1903_RC	119	168	143	99	183	105	159	86	179	105
CTATCTAGAACGCTCG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CAGGGCTAGTATTTTA	ref_1903_RC	34	60	68	41	61	38	65	45	64	37
TGTCCCCCGCTACTCT	ref_1903_RC	11	14	16	12	18	13	10	14	20	10
CTATTGATATATTTGT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CAACTATTAATAGTTT	ref_1903_RC	53	69	78	59	73	41	75	56	81	45
AACATCTGACCTCGCT	ref_1903_RC	3	7	3	6	4	5	3	4	3	2
TGGTGGACTCAGTTCA	ref_1903_RC	5	5	5	4	14	3	6	3	9	4
CGATTTGTGCTACAGT	ref_1903_RC	21	36	23	15	37	28	41	17	32	14
GAGACTGTTAGCTGAG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CTCCTCCCATCACAAG	ref_1903_RC	18	13	11	13	18	10	20	13	29	19
GATGCAAGCGCTACCA	ref_1903_RC	57	71	57	61	65	55	90	40	84	49
ACAATTTTTGCAGTGG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CCAGCCTTTCTTGGTT	ref_1903_RC	13	43	11	10	35	25	44	18	46	11
GATTTTCGCATTTTGG	ref_1903_RC	83	119	120	106	109	95	124	109	124	116
GACTATATACGCGCAA	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
AAGGCCCCTGCCATAA	ref_1903_RC	35	38	31	26	37	23	32	20	29	27
AGGTAGCATCTTCGAT	ref_1903_RC	0	2	4	2	1	3	5	0	4	0
TACACCAATTGTTCAT	ref_1903_RC	112	157	109	103	151	101	161	125	175	113
CGAGGTTGGCACTCTT	ref_1903_RC	4	7	5	3	3	6	6	3	7	4
TGAAGTATCATACGCG	ref_1903_RC	16	21	20	15	13	14	11	11	16	4
ATCAGTATAACACGTT	ref_1903_RC	0	1	0	1	1	1	4	1	1	1
ACCGACATTAAACTGT	ref_1903_RC	35	32	23	26	40	27	28	17	36	24
GCGCCTTTTTCGACCG	ref_1903_RC	54	59	55	45	58	54	81	43	64	42
CGTCAACAGTGTATTA	ref_1903_RC	26	50	28	26	41	32	52	27	51	41
TCCGGCAAAACTTGCC	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CTGGATTCGTAATAAT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CCTGCACCTGTGAACC	ref_1903_RC	7	7	2	2	5	0	12	0	9	3
GGTTTTGTGTGCGCAC	ref_1903_RC	20	40	19	17	30	17	19	17	32	12
ATATCGACGGATCGGG	ref_1903_RC	78	113	129	72	85	87	130	86	91	79
GATCTTAGATTTTGTA	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
AATGAACTGGGGCGTG	ref_1903_RC	12	8	5	4	7	3	18	3	11	4
CCCCATGTTCCGTAAT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
GCCCAATTGGTCTACG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
TTGCCGGTAAGACGCC	ref_1903_RC	13	14	9	16	12	11	19	16	15	8
CATCTATTTCTCTCGA	ref_1903_RC	24	13	17	27	25	24	35	22	36	8
TTTCTACAGTTGCAAT	ref_1903_RC	21	25	16	16	31	20	17	19	36	22
AGTTGTGTATTTCCCA	ref_1903_RC	9	11	17	5	12	15	12	19	26	7
ATTCCTGGTGCTCTTT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CTTTTAAGGTCTTCTC	ref_1903_RC	43	54	51	43	71	44	62	43	46	33
ATGGTACATCTGTAAT	ref_1903_RC	18	22	24	21	28	18	16	13	32	21
TTTTTGCAATCAACGC	ref_1903_RC	131	123	106	96	152	114	139	93	147	83
CCCTGAATGGCCCATT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
TCTTCTCCCGTTTTTG	ref_1903_RC	25	30	36	18	43	20	30	23	31	29
TAAACCCTCTATCTCT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
TCCTTTAATGCGTGTC	ref_1903_RC	45	63	48	40	51	44	49	51	58	40
TTCGCCGCCGACTCTG	ref_1903_RC	37	75	57	38	73	38	62	37	73	39
GGTTTTGTTCCCACCG	ref_1903_RC	4	11	13	9	12	12	6	10	12	7
TAAACCACTGTTGCTA	ref_1903_RC	30	73	60	48	56	48	52	38	68	33
CAGTTGTAGTGTCCGC	ref_1903_RC	26	37	21	26	35	22	31	11	37	24
TAGGTAAATGCCGTGT	ref_1903_RC	11	19	17	15	16	15	18	10	19	14
TTGGTTATTTCAGATT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
ATTTCTCAGGATGTGG	ref_1903_RC	40	30	30	31	38	26	31	35	28	29
TGTTCCTGCTGTAGTA	ref_1903_RC	40	37	36	29	39	22	41	26	34	37
TGATAGCCAATCTCTC	ref_1903_RC	30	36	34	19	33	24	31	25	38	27
GGCACAGACACGAAAG	ref_1903_RC	19	38	39	28	42	32	35	25	39	16
TCTTGGTAGACGAAAT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCCACCTGCTGT	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
AACCGACGAAACATCA	ref_1903_RC	8	10	12	8	10	14	17	9	15	4
GGGTCTGTATCTTAGC	ref_1903_RC	7	12	20	9	28	16	19	11	24	11
CTCAAGTATATGTATA	ref_1903_RC	46	59	43	45	73	67	66	38	91	32
GACATTTAATTCATTA	ref_1903_RC	2	0	2	0	3	1	0	2	1	0
GATCCGTTATTTAGGA	ref_1903_RC	26	33	23	24	31	19	25	26	33	33
GAGCTTTGGGCTAGAA	ref_1903_RC	31	43	22	17	28	21	26	19	48	23
TTAGTTTAATACATCG	ref_1903_RC	18	18	14	11	9	11	8	13	22	11
TATACTCTTCTTAGAG	ref_1903_RC	4	5	2	0	10	3	8	2	3	1
GATACGGGGAATCTGG	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
GCCTAGTACAAGGGTT	ref_1903_RC	10	13	8	14	14	9	18	4	19	6
TTTCTAAGCGTTTAGT	ref_1903_RC	217	249	273	235	284	217	262	200	304	166
CTGGCCTAGACCCGCG	ref_1903_RC	18	26	31	35	35	26	58	30	20	28
CGTACGTGGCTACCTC	ref_1903_RC	47	81	72	45	70	62	81	70	84	46
CCAGGTTATTCGTCAA	ref_1903_RC	5	11	10	2	14	3	11	5	12	4
GCGCGGAGATACTTTG	ref_1903_RC	68	84	110	91	87	80	95	55	96	73
TTTCGTACGGAGGTTG	ref_1903_RC	64	78	67	68	65	63	82	60	98	65
CTTCTTATTGATCTTG	ref_1903_RC	24	34	18	36	31	22	38	23	30	21
TAAAGCACATCAACAA	ref_1903_RC	4	6	9	9	6	6	8	5	12	6
TTTGCATAATCGTATT	ref_1903_RC	41	63	65	67	74	62	79	47	73	52
AGTCGATATTTATCGC	ref_1903_RC	4	18	9	8	13	7	19	8	9	7
ACCTTTCCTACGCTCT	ref_1903_RC	164	183	167	151	212	143	227	129	255	135
TAACTGCAGCATAGGT	ref_1903_RC	56	82	61	57	78	65	79	51	111	49
GACACACCCCACCTGC	ref_1903_RC	0	0	0	0	4	0	0	0	6	3
GCGCACGCCCTGAGGA	ref_1903_RC	47	66	66	42	61	56	65	50	59	47
ATCGCGAATATTTTGC	ref_1903_RC	12	9	7	12	14	11	19	11	13	10
GCAAAGCTTTGTTTTC	ref_1903_RC	15	25	26	11	27	17	30	14	21	20
CCCCTGTTCTTAACCA	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
CTAAATCTGTGCGCAA	ref_1903_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTAAATGTAATG	ref_1903_RC	8	16	10	9	13	3	13	15	25	6
TGACTTACGACATAAA	ref_1903_RC	18	15	7	15	26	13	28	16	22	17
GCTAGGTAGTTAAACT	ref_1617_RC	72	86	106	67	95	66	102	77	92	77
AAGTATTCATATGTAA	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
CTGGATTTCGCACGGA	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
GTTTTTTATTTCGCAA	ref_1617_RC	70	69	93	89	96	70	89	72	91	68
TGCTGCTACGCGCTAG	ref_1617_RC	42	29	55	30	48	46	42	36	59	36
AGGTGATTCTATTCGA	ref_1617_RC	32	31	40	37	26	38	37	32	36	26
ATTTGCTAATATGCTT	ref_1617_RC	10	9	8	13	13	11	8	8	9	2
TGGGGAAGATCACACA	ref_1617_RC	7	5	3	2	10	5	4	9	3	6
GCCTGTCTGCAAGTGG	ref_1617_RC	12	16	14	17	28	8	9	19	12	15
TTAAAATTTTGAGTCA	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
TCCAGCTAACTGCAAT	ref_1617_RC	55	65	70	41	73	50	71	55	86	59
GAGTTTTTGGGGGGGA	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
GTAGTCTGCCCGGGTC	ref_1617_RC	4	3	0	8	5	6	8	3	4	3
CCGATTAAGACTCAAG	ref_1617_RC	40	97	27	36	85	40	94	29	97	29
GCTAAGGCTCCCGTCA	ref_1617_RC	17	6	22	12	17	13	18	15	18	12
AATTTAAAGCTGATTT	ref_1617_RC	35	48	47	42	49	41	35	40	51	43
TAGGGGTAGCTTGGTA	ref_1617_RC	100	118	126	103	115	122	117	81	130	98
GAGGACTCGTTATCGC	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
GACATTCTAGGCTCTG	ref_1617_RC	7	7	10	9	16	8	9	5	7	3
GTGTGAATTTTGTCCT	ref_1617_RC	84	96	102	87	90	89	95	77	108	70
TGTCAAATTGACGACC	ref_1617_RC	24	26	34	34	31	24	26	14	37	13
GCAGGTATTGGAGCCC	ref_1617_RC	30	61	48	43	50	36	53	24	44	34
TATGTTTCGACCAGGC	ref_1617_RC	56	49	82	61	69	54	61	53	51	60
TTCCGTGTTAGGAACG	ref_1617_RC	90	79	114	104	101	82	127	84	98	75
CCGATCAGAAGTATGT	ref_1617_RC	129	176	202	166	191	130	165	135	156	121
GCGTGTCGTACTCGAG	ref_1617_RC	49	57	57	47	37	51	51	49	56	35
GGGCTAAAACCAGTTG	ref_1617_RC	16	6	8	10	12	5	11	9	13	15
GGCTACTTATTTGCTG	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
CCTCACGGGACGCCCA	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
TACCTCTATGCTAATG	ref_1617_RC	15	47	33	22	23	22	42	26	51	22
TAGCAAAATCCTCTGC	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
CCTGATTAAGGCCCCG	ref_1617_RC	10	9	13	11	10	6	7	6	6	8
AGCAGGAGCAGCACGG	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
TTTTTGGGAGGCTGCT	ref_1617_RC	15	12	22	17	21	12	7	21	15	14
ATTCAATTTATAGATT	ref_1617_RC	23	25	22	22	24	28	40	32	22	17
CCTGTGTGCGTTAGTT	ref_1617_RC	92	169	127	76	146	96	187	109	181	83
GCACGCTTACGTTGCT	ref_1617_RC	89	79	83	72	62	60	88	74	89	50
TTCCGCGTCCATCGTG	ref_1617_RC	30	9	24	22	20	17	26	26	35	18
CTGCTGAGGATACTCC	ref_1617_RC	3	5	6	11	8	5	7	2	12	5
AGTGTTCTAGCGTTAC	ref_1617_RC	23	20	26	18	14	13	23	8	22	18
CTTTACGCAGTTATTT	ref_1617_RC	2	5	0	0	0	2	0	3	2	1
ATTACCCAACGCAAGA	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
AAGGAACGTTCGCTTC	ref_1617_RC	11	10	14	12	19	11	16	9	19	10
CATCGGGGTTCTCGCT	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
GTATCTGCATTTTTGA	ref_1617_RC	5	9	4	1	1	0	1	2	4	1
GTATTTATTTGGAACT	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
CCTTCGATTTGACTAA	ref_1617_RC	15	16	17	24	15	16	11	10	22	11
CTTTCCCTCGGGGGTG	ref_1617_RC	9	10	13	9	7	7	13	1	14	13
GCGATCCCGTAGGGCT	ref_1617_RC	4	5	5	0	9	2	5	7	3	2
TGCATGCGGTCCGACC	ref_1617_RC	12	23	13	14	18	16	24	15	22	14
TTCATTTTCGTCAATA	ref_1617_RC	52	90	93	77	86	63	63	76	89	67
CCCGCTTAGGACCACA	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
ATCGTTAGGCCCGACA	ref_1617_RC	82	52	102	89	84	57	70	82	83	78
GTTATCGCACATTCAA	ref_1617_RC	151	233	217	194	198	170	194	180	189	174
GCCATAAGGCTTCCAC	ref_1617_RC	54	44	64	59	58	62	50	45	63	52
GCCCCCCAAACGTTTG	ref_1617_RC	2	2	3	0	0	0	1	2	1	0
TCTTACGGCAATCAAT	ref_1617_RC	150	172	227	163	189	194	205	132	229	133
GACGTTTGATCTTAAC	ref_1617_RC	100	80	95	101	85	68	85	45	87	77
TGCGAGGATGCGCCGT	ref_1617_RC	1	2	3	3	3	1	4	1	1	1
TCTCAAGAATAGTCTT	ref_1617_RC	22	35	20	15	38	16	42	17	35	29
CGTTGTATAGCTGACC	ref_1617_RC	0	0	0	0	0	0	0	0	0	0
GGATAAATTGGTAAGA	ref_1617_RC	7	6	8	5	9	7	6	9	4	7
TACTTATTACTTGGTG	ref_1617_RC	36	49	42	47	77	43	70	30	62	36
CGACTGTAAGGCGCTT	ref_1617_RC	24	36	36	29	25	25	28	24	32	28
AGTGCACATTCCATTA	ref_1617_RC	0	5	4	3	7	2	4	3	2	0
TATCGACTGAGTGCAC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
AGGCAGGTATCTCTGT	ref_2134_RC	13	34	25	28	32	19	34	17	34	13
CTGGCGCAACACGCAT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GCCCCACTTTCAGATG	ref_2134_RC	39	32	42	20	47	34	42	27	55	37
ATGAGAACTTAAGCTT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CACGTATCTTTTGTTT	ref_2134_RC	70	88	65	64	74	45	81	58	80	48
AAGTGTACTCAGTATA	ref_2134_RC	68	149	91	73	148	77	119	75	147	85
GTTTGTGCTAACGATT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTACTCCAGCCTGCTT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GCGTTTGCTATCAAGC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTGGGCTCTCATGTGC	ref_2134_RC	7	14	11	17	17	11	14	9	18	4
TGCTGATGTGCCTGCA	ref_2134_RC	22	36	27	29	29	19	36	23	45	17
TGCCTAAGAGAAGGTC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GCGAATTACGTCACTG	ref_2134_RC	33	45	37	34	71	47	44	40	60	34
AGTTGTCGGCTCATCT	ref_2134_RC	93	127	92	58	99	69	130	77	106	74
CCAAGTATAGGACTCT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GCTCTATACCTTTATT	ref_2134_RC	5	20	14	7	15	2	19	8	12	8
ACGCTGTTCTTTAAGC	ref_2134_RC	7	4	10	6	4	13	2	2	5	6
TACTCCGGCGGGCCCT	ref_2134_RC	22	29	25	17	33	24	19	23	50	23
TCACTACGATGCAAGA	ref_2134_RC	24	49	47	29	50	44	60	27	57	25
GGGTTGTCGTTTTACC	ref_2134_RC	12	42	20	10	23	19	34	13	36	19
AGCTTGGCCATTTTCC	ref_2134_RC	10	10	6	10	22	6	23	13	16	7
CCAAGTTACAGTCTGT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CATCCGTAATTCTGTC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTTCATGCATGAATAG	ref_2134_RC	50	68	64	47	82	64	73	52	86	41
GATCGAGCGCCCCGAG	ref_2134_RC	17	33	36	23	23	24	42	30	46	28
CACAGTTTGATGAGAC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CGAACTTTCGGTTACA	ref_2134_RC	14	24	15	13	26	24	25	16	32	17
GTGCCAGATACCGACC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TTTCTTAGAGTCCATA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TTTATGCCCCGAGCTT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TATTGGTCGTGGGATG	ref_2134_RC	21	27	39	22	34	15	38	13	40	26
AATGGGCGCTAGTTCC	ref_2134_RC	15	13	22	11	18	12	23	9	13	15
ATCAGTCCCGGTCGCT	ref_2134_RC	4	0	4	2	8	3	4	3	3	0
CTCCCCCGCTGCTCTG	ref_2134_RC	37	62	48	34	86	30	99	34	62	33
ATACGATCCTTTTATA	ref_2134_RC	57	75	56	64	79	50	81	42	81	43
ATCGTTTATTCCATAC	ref_2134_RC	8	12	6	11	9	10	14	6	14	6
ACGTGTCTCCTTGGTG	ref_2134_RC	64	80	66	48	78	45	92	55	94	54
AGTTAGTACCGTAAAG	ref_2134_RC	5	3	4	8	6	4	7	4	4	7
ATTGCTTTCGATGTTT	ref_2134_RC	13	22	11	14	19	13	32	4	19	13
CCACCGGGCTTCACGT	ref_2134_RC	15	20	18	13	31	10	30	14	24	14
GGAAATTATTCGGTCT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GTGGTCGCTCGCATAG	ref_2134_RC	42	47	50	38	67	41	68	26	55	38
CGGACTATGCCGCTAA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TAGTTTTTTCATGAGG	ref_2134_RC	38	56	41	35	68	42	75	40	68	36
ACGCAGAGGTGCAGTG	ref_2134_RC	1	2	0	0	2	3	1	0	1	1
AGCCCTATGTGCAAAG	ref_2134_RC	10	29	15	13	26	14	22	15	22	20
GAATGGTACCACGGAT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GTACATTAATAGTCCG	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TGAGTCGCTCGCTTGG	ref_2134_RC	1	6	3	2	5	1	4	4	7	1
TAGAAGGGTTCTTGTG	ref_2134_RC	25	37	26	27	26	25	48	23	39	20
CCGAGATATGCTCGTT	ref_2134_RC	0	6	4	2	7	2	5	4	3	2
CGGAGTTAGCGAGTCA	ref_2134_RC	33	52	52	37	60	21	58	23	57	31
CAGTCTTGGCCCACAT	ref_2134_RC	34	68	56	34	79	39	85	50	76	31
CGTATCCTGCATCCTA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
ACTGCCGTTGTATGTC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTAAGCCCCGCTGAAC	ref_2134_RC	29	56	38	43	57	33	42	28	51	39
AACCTCAGTTATTGCC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TGACCCCAGCACTGTG	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTAGAACGCCGG	ref_2134_RC	1	4	3	3	11	3	6	6	7	2
CGCAAAAAATGTCCTG	ref_2134_RC	10	7	10	5	9	14	11	9	9	8
GTAGCCTTTTCCAGGA	ref_2134_RC	60	88	85	61	89	54	89	57	99	41
ATGCTGTTTGTGGTTG	ref_2134_RC	10	23	19	8	19	13	24	14	19	10
ATCTGCAGGACTAAGG	ref_2134_RC	7	10	21	13	19	11	26	12	28	12
TTGTCTTGCCATTCGT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TGTTTCTCTGTTGAAT	ref_2134_RC	17	36	27	17	57	16	34	21	46	20
CTTCCGTTTGTTACCG	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTGAGTTGCCACGTCT	ref_2134_RC	15	33	22	21	28	17	39	26	42	16
CGTCGGCGGTATCGGA	ref_2134_RC	11	24	21	18	11	16	23	14	25	15
TGATCCATCTGTGCGT	ref_2134_RC	12	22	10	11	24	15	26	10	25	15
TCACTTGCCACATTCG	ref_2134_RC	8	20	22	9	23	14	14	8	15	6
TAGTAATAACCGACCT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTGGATAAACCTTCGA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTACCGCCCCACCTCT	ref_2134_RC	50	113	75	69	131	58	140	57	126	53
CAGCAGCAGGATCTAT	ref_2134_RC	40	98	63	51	93	44	92	42	83	48
TCATGCCTCCTGAGAC	ref_2134_RC	24	13	21	29	36	25	22	17	24	26
CCAATCACAGGCCCAT	ref_2134_RC	18	23	31	22	35	26	39	16	38	22
TATCTAGTGACGATTT	ref_2134_RC	7	9	21	7	17	12	17	10	12	5
ATCAGATCGTATTGAG	ref_2134_RC	41	99	70	58	76	51	87	67	102	48
GGGTCAGGTGCTCTCT	ref_2134_RC	18	38	34	27	34	34	32	12	33	31
TACGGTCGGCCGTACA	ref_2134_RC	0	1	0	0	1	0	1	0	0	0
TCAATCTTAACGCGAT	ref_2134_RC	67	86	83	64	86	58	118	76	89	67
ACTGCAGTTCTGGGCT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
ATATGGCAGCTAAGTA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
ATGTAGCTCCGCAAGA	ref_2134_RC	9	12	17	9	21	9	24	9	22	17
GTTTTCTCGGTCTTCG	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CCTGCCCTTGTATTTA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
ATGGCGCTGCAATCGC	ref_2134_RC	24	42	38	34	30	25	30	24	47	25
CAGTGTATTATTTGCC	ref_2134_RC	19	70	47	51	68	48	89	45	70	24
TGATTTTCCTTCCGAA	ref_2134_RC	4	2	6	0	3	6	7	5	2	3
AACCGTCAGTCTAGTC	ref_2134_RC	60	117	79	54	88	49	101	50	114	62
GTGGTAGTAATTCTTT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GAGTCCCGGAAATTCC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CACCTTTCTTATCTTC	ref_2134_RC	69	85	116	85	88	80	91	91	97	76
ATGATCACTCAGCCAG	ref_2134_RC	4	15	7	9	17	8	14	12	14	1
CTGTTGCTGGTAGTTT	ref_2134_RC	25	38	33	21	42	29	41	21	40	17
CGCAACGTGGAGGTCA	ref_2134_RC	17	7	16	14	13	9	17	7	15	10
GGCCGTCTGAGGTGTG	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TTACACCAGTGATTAC	ref_2134_RC	53	81	63	44	94	39	83	48	104	53
CGATATGTACCACCGC	ref_2134_RC	13	27	25	26	37	5	32	24	25	31
GCCAAGGTACGAAATA	ref_2134_RC	8	24	15	24	23	16	32	11	21	10
GTGCTTACCCGGAGCT	ref_2134_RC	14	16	17	7	26	6	25	15	27	6
TGTTGGAGAGTCCGGG	ref_2134_RC	3	4	5	7	4	2	6	4	4	4
AAGAAACAGTTTATCT	ref_2134_RC	9	17	16	11	24	10	20	15	14	7
GTACAAGATGGCTGTT	ref_2134_RC	100	110	120	107	117	90	117	95	129	94
TTGTTGTACACTGGTC	ref_2134_RC	10	15	9	4	15	10	17	5	14	3
GGGATTCCAGGCGCAA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TGCTTGGGTTTTACAG	ref_2134_RC	2	2	2	0	2	0	3	1	3	1
GCCTGGACCATCCAGC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TGACTTTACGTTATCC	ref_2134_RC	22	18	20	14	15	13	20	18	24	11
CTAATTTATGTCAGTT	ref_2134_RC	14	16	9	7	16	5	17	9	13	11
ACTGTTACCGGTGACG	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
TGCACGCCAGCCGCGT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
AGAATCAATCAAACGC	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GCAGAATCATTAGATG	ref_2134_RC	7	19	14	10	20	13	31	3	23	10
CTTCTACCCGTACCGT	ref_2134_RC	19	45	50	43	64	26	68	38	72	32
AGTCCCTACTTGGAGA	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CTATGTGGTGTAGTAC	ref_2134_RC	20	43	41	20	46	28	63	21	47	17
ATTTAATTCTTTGCGG	ref_2134_RC	23	39	33	32	33	28	37	21	31	37
TAGGCATATATATTGA	ref_2134_RC	24	42	26	24	46	20	47	17	38	28
AGGCTCAAGCGTATCT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
CATCGGTTATTTACCA	ref_2134_RC	7	22	17	5	16	7	19	15	18	7
AGGCTTTATTAGACTT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
ATGTTACATTGGTATT	ref_2134_RC	40	63	55	55	54	41	58	30	62	47
AGATTCGGTTTTCAGG	ref_2134_RC	1	0	2	1	6	3	2	0	2	0
TTAGGTATCACCGCGT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
AAGTAAGGAAGTTCGC	ref_2134_RC	4	11	5	4	12	6	12	10	9	4
CACTAGGATATAGTTT	ref_2134_RC	0	0	0	0	0	0	0	0	0	0
GGGCTTAGAGGTTCGA	ref_2134_RC	45	62	54	42	67	35	78	28	87	57
TAACCTGATCATTTGG	ref_2134_RC	33	46	34	27	51	23	46	27	49	25
TTTTTCGTTTCGATCG	ref_2134_RC	12	29	27	20	31	19	19	20	42	21
GTCTGATAAAGTCATC	ref_2134_RC	14	48	34	40	58	35	42	35	56	25
TGAAGGGGCATACCTT	alt_5165_upstream	80	94	112	68	71	78	82	68	85	78
CCCGTCTCGGATAGTG	alt_5165_upstream	109	112	156	138	145	136	138	107	130	101
GTTTATCACATGCATC	alt_5165_upstream	65	65	92	80	53	77	56	61	66	82
GTATTCTTGGTCCCAA	alt_5165_upstream	101	72	87	86	85	88	89	96	70	71
TGTTAGGCCGACACGT	alt_5165_upstream	88	77	89	101	63	87	74	76	57	81
CCGGGTAGCCTAGCTT	alt_5165_upstream	7	16	5	6	5	7	8	5	11	3
CGCTGGTTATCTAGTC	alt_5165_upstream	13	7	18	14	11	16	3	18	12	14
GCCACAATATTTCAAG	alt_5165_upstream	82	72	80	80	63	59	73	80	79	74
GTGCAAGGTCTCTTAC	alt_5165_upstream	4	2	2	1	2	2	0	2	5	0
CAGGAGACACCCGTAT	alt_5165_upstream	101	94	174	104	82	89	102	129	84	104
GCTGTCTATGCCCTTG	alt_5165_upstream	87	96	126	92	91	90	71	82	80	103
GTTGCGATATTGGGCT	ref_5165_upstream	52	51	60	54	35	51	39	60	51	38
TTTGTTTCCCGTCCGC	alt_5165_upstream	45	44	54	54	30	51	45	57	45	48
GAGACTCGCGCATTAG	ref_5165_upstream	99	77	106	82	111	74	85	83	95	64
CTATCTCCGGAAGCAT	alt_5165_upstream	22	10	19	11	6	12	27	18	20	19
GTTGCCCTGTTGTATG	alt_5165_upstream	25	18	20	22	18	12	20	24	26	21
GTGGCTCCGGGGAGAC	alt_5165_upstream	28	30	42	21	18	26	20	15	19	28
TTAAATCGAGAAATAT	alt_5165_upstream	21	8	16	24	17	19	15	12	23	24
GTTGTGTGGACAAGTT	alt_5165_upstream	215	135	193	189	155	171	150	193	166	197
GGTTAGGTCAGTTATT	alt_5165_upstream	144	81	140	116	78	103	84	96	103	113
TTCTTCCATCGCGTCT	alt_5165_upstream	39	22	44	32	22	37	29	24	33	25
TGCGCCAATACGCCTC	alt_5165_upstream	25	33	43	34	28	38	45	21	43	30
GAGCGTTGTAAAGTCT	alt_5165_upstream	63	54	52	44	39	49	47	37	59	55
CAATATGTGGTTATTG	alt_5165_upstream	107	66	97	87	75	79	100	72	88	74
AACGTTAGAGTTACCA	alt_5165_upstream	4	4	0	4	0	2	2	3	2	5
GTTCACAGAATCGGTT	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
TAGCACAGACAAACAC	alt_5165_upstream	47	29	51	40	27	38	35	40	39	46
CGTCTTCAGCTCACAT	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
GTACTCGCTTTCACTC	ref_5165_upstream	8	17	5	12	8	10	5	9	7	10
AGACCACGACGATCCC	ref_5165_upstream	10	11	10	17	19	14	13	18	13	8
GATAACCTTCCTGTTT	ref_5165_upstream	43	32	57	46	33	42	25	29	27	44
CGATGATAAGTGGACG	alt_5165_upstream	40	30	48	41	41	53	46	29	21	34
AAAGTACAAATACAAG	alt_5165_upstream	17	7	22	23	11	16	15	17	11	17
CAGGGTCATGGTCGGC	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
CTCACTGATAGCGCAG	alt_5165_upstream	6	8	12	14	3	10	8	14	7	8
CAGAGCATTTATGTGC	alt_5165_upstream	33	17	31	29	9	31	24	27	20	23
GGGCAAATTATAGTGA	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTATTAGGCCCAT	alt_5165_upstream	36	18	21	24	28	22	26	19	17	24
AAGGAGTTTAACTACG	alt_5165_upstream	19	13	14	18	16	18	17	10	20	13
CACTTTTCCCATGTGT	alt_5165_upstream	23	37	36	24	49	29	45	27	45	26
ACTTGCCACGTTCGTC	alt_5165_upstream	123	123	132	124	114	110	110	120	112	111
GTTTAAAGCACCATAG	alt_5165_upstream	9	19	26	23	16	22	18	20	13	36
AAACTTCCGGTGCTTA	alt_5165_upstream	7	16	19	10	9	7	9	7	10	14
TGTGGGACTCACGGAT	alt_5165_upstream	56	36	82	55	50	54	50	69	50	54
TTTGAGTTAACAACAA	alt_5165_upstream	133	123	168	147	119	137	148	115	149	136
GTGGCCTACAGTTTGG	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTAGACATTTTGC	alt_5165_upstream	6	2	4	7	0	0	5	1	3	6
TGCTCTACCCTCATGA	ref_5165_upstream	13	12	21	11	13	10	19	17	9	14
CCCGGTGTGTTGAATT	alt_5165_upstream	48	143	62	54	100	61	145	41	145	47
ATCTGTAGGACTACGG	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCTACAATCCATC	alt_5165_upstream	2	0	2	4	1	5	2	4	4	3
CGGCGAACATTAAGCT	alt_5165_upstream	161	111	186	141	123	160	140	142	144	118
CGCCACTGGTTCTGTG	alt_5165_upstream	188	114	192	169	150	180	170	162	154	131
CAAGTTTAGGGTTGGT	alt_5165_upstream	92	70	96	87	70	84	83	65	84	73
CAGTGTCCCCTCTACA	alt_5165_upstream	24	24	32	11	22	19	17	21	20	19
GTGCATCGTCACGTTT	alt_5165_upstream	46	36	68	59	36	53	41	39	54	41
TATGATCTTTTTGGCT	alt_5165_upstream	10	9	4	4	6	7	2	7	4	3
AGCAGAACGGCCCCTC	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
AATATTGACATGGATG	alt_5165_upstream	12	8	11	3	7	4	5	3	8	1
TTGGTGCTCATTTATA	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
ATGACGTACTTCTGCC	alt_5165_upstream	48	36	49	49	25	38	38	43	44	37
CGATTGGAGATCATAA	alt_5165_upstream	55	58	66	43	65	31	55	40	60	44
TTGCGCGTGTATACGC	alt_5165_upstream	33	19	33	23	25	28	32	24	28	24
CTTAAGGGACTAATGG	alt_5165_upstream	15	16	33	24	17	22	11	18	24	10
CCGTGAGTAGGTCGAT	alt_5165_upstream	82	51	94	72	77	67	69	74	80	68
GTTGTCTTGCCTTTTT	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTGGAGTTGAGCA	alt_5165_upstream	44	40	48	37	32	45	33	53	30	63
AGTTTTTTTGACAAAG	alt_5165_upstream	19	16	21	18	16	19	22	12	15	13
CTTCATTAACGTAATG	alt_5165_upstream	18	14	13	10	17	11	12	9	16	10
CGTTCTCGACCGAGCA	alt_5165_upstream	131	95	130	119	95	109	100	105	109	121
CTAGATATCGTGTCAG	alt_5165_upstream	50	36	35	41	35	35	42	31	35	36
AATTCCCCGGGAGAGT	alt_5165_upstream	45	54	47	36	37	38	42	42	22	36
ATGGAGCTACGGCACG	alt_5165_upstream	211	164	247	247	178	220	188	203	192	164
ATGACGTTTCCCACGG	alt_5165_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCACATTACTCAT	ref_1218_reverse	18	22	20	30	31	19	32	33	36	33
CATAGGTTTGCGTGGG	ref_1218_reverse	37	39	48	43	51	47	45	51	44	38
GCTAGGTGAATCAAAG	ref_1218_reverse	24	7	9	15	19	7	16	13	11	20
CGACTTCTCTTCTTCT	ref_1218_reverse	68	51	60	63	50	70	49	65	51	52
ATGCCCTTCTATAAAC	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
AACTTTATGCTTCCTC	ref_1218_reverse	30	28	36	17	22	21	20	29	29	34
CGGCCTTTTTGCGCGT	ref_1218_reverse	44	36	51	41	42	35	53	42	47	40
TATGAGAGACTAATTC	ref_1218_reverse	1	1	0	0	3	0	3	1	0	1
ACTTGTATTAGTCTTT	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
CACCCCGTCAAGCCGC	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCGGGTGCAAACT	ref_1218_reverse	14	17	10	10	9	9	15	14	7	9
TCTCGTCCTTTAAATC	ref_1218_reverse	352	441	431	335	452	327	407	307	441	313
TCGTCCACCTAACGCT	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
TATTTAAGTGGGTATA	ref_1218_reverse	69	95	96	72	101	64	103	54	111	61
CGGCGCATATTACCAC	ref_1218_reverse	29	38	29	23	31	22	39	16	34	19
TGAGCGGCTTATTTAG	ref_1218_reverse	22	24	26	36	35	18	30	30	28	18
CTATGTGCTCGTATCA	ref_1218_reverse	28	50	54	17	46	30	42	30	41	25
CGCGGCAACCCGGTCA	ref_1218_reverse	2	3	2	7	7	3	5	8	5	2
CGTGCTCTTAAGCCAC	ref_1218_reverse	1	1	2	0	3	3	1	3	0	2
GAGACATCTTTCCAGA	ref_1218_reverse	19	26	39	31	32	31	38	20	43	18
CTGATGAGATTTTGTC	ref_1218_reverse	3	0	3	2	2	1	3	2	4	0
TGCGTATTCTGACTTA	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTAAGGTTACAG	ref_1218_reverse	49	51	43	51	50	37	42	35	41	45
AGGGCGGGTCAGTTTG	ref_1218_reverse	1	1	0	0	4	0	3	1	4	0
TTGTTCCAGACTGACA	ref_1218_reverse	70	113	93	78	111	77	138	88	126	75
CGTGCATTTAAGTCTT	ref_1218_reverse	70	109	77	90	106	84	99	74	90	67
AAAGGGTCATCATCCG	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
AGGATTTGAGCAGTGT	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
TACTACGCTGAGTTCT	ref_1218_reverse	30	41	49	29	43	30	55	28	33	32
CAATTTGACAGGTTTA	ref_1218_reverse	42	49	65	39	63	36	61	24	49	42
ATAATGTTCTCATCAA	ref_1218_reverse	46	81	73	44	94	54	76	59	93	62
GCTATACTCAAGTTCG	ref_1218_reverse	9	6	7	9	11	6	10	3	4	5
AACGGTTCGTGCATTA	ref_1218_reverse	50	86	69	52	82	55	75	45	65	32
ATGGAAGGTGCCGTCC	ref_1218_reverse	34	34	60	34	53	25	43	37	47	33
GAGCACTGTTTGCTTT	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
GCACTCTCCTATGCCA	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGGTAGATGCGGC	ref_1218_reverse	23	28	28	17	18	11	36	6	22	15
GTGAAGATGTGCTTTC	ref_1218_reverse	16	19	22	9	12	9	18	11	7	11
GTAGATGCTTCTTTGC	ref_1218_reverse	2	11	12	9	14	3	8	10	7	5
CCTAAACATGATCTTC	ref_1218_reverse	8	11	5	6	13	3	13	4	10	4
AAGCTCGAGTGGGGTA	ref_1218_reverse	14	31	33	19	26	18	25	21	34	8
CTCTTGAATTACGCCA	ref_1218_reverse	13	12	19	11	10	11	8	12	7	5
CGTCGAAGCCGTGTAA	ref_1218_reverse	1	9	6	1	11	5	3	3	7	4
TGAGTCGCTCCGCTAG	ref_1218_reverse	39	60	81	59	65	41	67	65	72	38
ATCCTAATAGTTCATG	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAAGCCAGTATTA	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTGCGTTTGACTC	ref_1218_reverse	112	107	90	100	104	90	113	85	104	86
GTATCCCTGCAAGTTG	ref_1218_reverse	14	23	27	20	18	27	29	16	21	24
TACGTACTACGCGATG	ref_1218_reverse	127	191	194	152	200	157	149	169	208	144
TAATTAAGTGGGTATA	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTCATTGCGTTGG	ref_1218_reverse	4	13	7	6	10	2	10	4	11	3
GTGTATAAGGGGTTCT	ref_1218_reverse	32	29	20	33	30	23	17	18	29	16
AGTGAGTGTGGATGAC	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
TGTGATGCGGGGGCTG	ref_1218_reverse	37	31	38	26	37	23	44	15	51	29
CTATCTGGTTGCTTTA	ref_1218_reverse	18	22	25	26	27	22	20	19	38	15
CCATGTGCTATCTTGC	ref_1218_reverse	38	89	40	42	106	36	70	29	89	28
AGGTATGAGCGGAGTG	ref_1218_reverse	2	5	2	3	3	2	2	3	4	0
TCAGGTGTGGGATGAT	ref_1218_reverse	84	123	97	103	104	67	139	83	129	77
GGGTGGCGAATCTTGT	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
AATCTCGTAAACTTCC	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
CATAGTTTCAGCGTAT	ref_1218_reverse	2	3	6	2	1	1	2	1	6	3
AACAAGATTCTGGTGC	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTCGCGACGTGGC	ref_1218_reverse	0	0	0	0	0	0	0	0	0	0
CCACAAGCAAGAACGA	ref_1218_reverse	0	2	4	1	7	2	7	6	4	4
TTCGATGGTGAACGTC	ref_1218_reverse	51	57	49	46	55	52	44	48	56	31
ATTATTTTTGCCACAG	ref_1218_reverse	160	248	233	191	178	183	248	121	280	178
AAATTATACTTCAAAC	ref_1218_reverse	29	37	37	28	42	27	38	32	36	27
CGCAGCATGGTGGATC	ref_1218_reverse	16	18	23	18	22	16	20	8	9	7
GAATTTGCTTGTCATG	alt_4170_fdr	72	58	88	71	65	84	59	73	53	96
CTCCGTTTGGTTTGTG	alt_4170_fdr	48	42	49	51	31	28	22	42	40	36
TTAATAATCGATGGCA	alt_4170_fdr	174	97	200	185	120	165	123	132	130	149
TTTATAACGCATCCCC	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTAAGGTTCCAAG	alt_4170_fdr	9	7	12	5	4	8	12	10	13	11
AAGTTGTACCGCATAT	alt_4170_fdr	8	6	5	7	11	11	5	3	9	10
CGCGAGTTTATGCATC	alt_4170_fdr	52	48	67	52	49	62	35	33	47	41
ACGACGAACTACCCTA	alt_4170_fdr	3	4	10	6	4	1	6	3	3	0
AGCTCCTGTCCTTTGA	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
AGTTGCGCGTCTAATG	alt_4170_fdr	98	103	132	116	94	105	114	88	146	102
GATATGCTCCCTGTAG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTGAATACTGAT	alt_4170_fdr	143	111	160	133	99	146	83	108	111	106
AGGATTGGCGCACCTC	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
TATTTTTAGTTCTGGA	alt_4170_fdr	76	44	49	41	32	56	40	46	44	50
CCCGTTCCGTTCACAT	alt_4170_fdr	32	39	69	34	39	44	37	55	44	42
TGAAAGGTAACACCGA	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
ACACCACTTGGCCTGC	alt_4170_fdr	141	93	171	126	71	102	85	113	85	102
CGGGTTGGTGTCCGGT	alt_4170_fdr	14	8	23	6	14	4	7	14	13	12
TACGCTTGTCTTCTCG	alt_4170_fdr	16	17	26	18	12	22	12	23	13	16
TGTATTGATGAATATC	alt_4170_fdr	48	32	65	43	18	59	29	39	32	40
AAGTATTTATATCGTT	alt_4170_fdr	98	84	116	115	63	108	72	107	94	130
TGTCTGTAAGCGTATC	alt_4170_fdr	247	162	314	254	200	267	187	240	218	265
CGTGTGTTGAAGTAGG	alt_4170_fdr	100	74	115	79	73	93	66	96	78	81
GGTCGTCAGGTATTCC	alt_4170_fdr	167	137	204	196	138	192	175	174	145	172
AAGAGTCAGATTTTGG	alt_4170_fdr	59	54	75	50	58	53	55	53	54	72
TACAATTATGGCGCCG	alt_4170_fdr	33	13	31	33	14	23	10	33	18	29
ATTGGTCTCTATGCGC	alt_4170_fdr	5	3	10	10	4	9	3	8	5	9
TCGCCCTCCCGGATAA	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
AGGCACCAGAGCTATG	alt_4170_fdr	51	34	53	46	37	49	28	59	33	36
CGACCAGGTCATTAAC	alt_4170_fdr	12	3	5	3	6	3	8	2	5	4
CCATATGCCCCAAGGG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
ATCACCAACGATGTCC	alt_4170_fdr	161	99	161	163	124	154	132	163	107	131
GACGTCCTTTTGGTCT	alt_4170_fdr	304	230	390	359	229	316	276	272	288	318
CCCATGTGGATAAGCT	alt_4170_fdr	114	98	160	132	73	113	100	118	94	103
ACTCGTTCTGCGCATC	alt_4170_fdr	224	151	257	245	180	209	147	242	177	204
CATCTTTCCATGAGTG	alt_4170_fdr	33	30	39	37	43	41	46	56	37	48
TTTCTAGATTGGCGTT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCAGACTCTGACG	alt_4170_fdr	132	74	133	108	78	90	80	92	96	78
TCACGTTTCACGGCGG	alt_4170_fdr	97	78	111	95	79	94	92	79	100	103
ACCCGGATTAACTTTA	alt_4170_fdr	102	76	127	135	83	101	100	94	103	101
GTAAGCCCTGATTGCG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CGATTACTTAGTGTTA	alt_4170_fdr	26	28	33	24	18	34	21	30	30	19
TACGTTTCTGGGACAT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CACTGCAAAGAACAGT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCGTTGCCCGTCA	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTTCATTCTCTAC	alt_4170_fdr	13	27	26	31	21	25	22	17	17	18
GATCAGTAAGTTCAGT	alt_4170_fdr	3	4	4	5	5	5	6	7	8	4
CGGGGGTGGCACGGCG	alt_4170_fdr	13	8	17	17	8	24	21	21	15	14
ACGCTTTGCACGACAT	alt_4170_fdr	20	10	24	28	24	23	18	22	24	22
ATTTGGCAGATCCAAC	alt_4170_fdr	121	64	125	109	67	125	53	100	92	114
AGTACGGTACTCTTGA	alt_4170_fdr	14	8	16	10	7	10	9	23	10	19
AACATATGCCCCTGTG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTCAGCTCTGTAC	alt_4170_fdr	22	24	26	19	32	16	21	18	16	30
CCCCAAATCGAAATTG	alt_4170_fdr	252	164	262	234	193	290	179	237	174	234
GGCTTGCTGCGACCGC	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
ATACCACATGGGTTCC	alt_4170_fdr	185	117	207	192	143	153	111	187	144	139
ATGATTAGAGAGATAT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
GTCTATCCCTACGTCG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
AAAATCACATTTGTAG	alt_4170_fdr	70	43	74	51	48	61	35	55	44	49
ACGTTTGCGCGAATCG	alt_4170_fdr	84	52	101	93	54	112	59	93	63	62
AGCCATCCCGTACAGT	alt_4170_fdr	15	24	11	8	14	5	15	11	17	11
TTTATGGTAGAAACGG	alt_4170_fdr	14	5	9	13	5	8	6	7	6	10
CTCCGTGCGCTTAGAT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCCCGTTTGGCCC	alt_4170_fdr	1	9	0	1	10	0	3	0	6	0
TTTAGGCTCGATCAGT	alt_4170_fdr	17	13	21	15	9	11	11	6	6	11
ATCGGTTATGCTCTTA	alt_4170_fdr	54	37	59	53	41	52	39	39	51	62
AGACATGTTGGTAATG	alt_4170_fdr	31	8	28	20	13	30	12	16	13	15
CTTTGGTCATTCTTTC	alt_4170_fdr	47	33	69	56	32	43	39	52	40	55
GACCTCCGGGCTGTTA	alt_4170_fdr	24	22	29	27	18	24	20	25	37	29
GGTGTATCACTTCGCT	alt_4170_fdr	30	23	30	26	14	17	29	27	18	27
TAATACCGCCCGAGCC	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGTTTCGTCCAGT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
GACTCTGATTTGGCTG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGCCACAGCTTCG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTAACTTTGTACG	alt_4170_fdr	78	66	89	78	68	85	83	80	77	68
GGCGGCGTAGAGCCCG	alt_4170_fdr	61	55	85	67	49	87	63	84	47	66
ATCGGTGGCGGGATGC	alt_4170_fdr	255	170	279	220	171	237	209	228	166	204
GTTTTTGTTGAATTTC	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCCCACCGGTTTG	alt_4170_fdr	5	15	6	5	13	6	14	3	12	1
TTGGTGGGTCCTAGCG	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
TACGATGGCGCCTCTT	alt_4170_fdr	44	36	74	46	31	54	30	40	19	44
TCAGTGTACGAATAAT	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
TCCCAGCAGAACTTTA	alt_4170_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTAGTGGTTTCCG	alt_4170_fdr	25	19	40	29	16	20	18	28	23	14
GATCAAAGAACTAATT	alt_4170_fdr	11	10	17	11	5	10	11	6	4	10
ACTATCCGTTTCTTTG	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
AATGTACTTTTGCTCT	ref_396_upstream	28	30	37	30	22	32	21	28	17	18
ATCCGTTCTAGGTAGT	ref_396_upstream	19	27	32	16	18	11	28	17	10	14
GATTATGTGCGGATCC	ref_396_upstream	1	3	1	1	4	3	2	6	1	1
ATCCTAGCGGGGTGTG	ref_396_upstream	19	34	36	28	38	23	34	25	46	35
GTAGTTTTAGTACCGC	ref_396_upstream	54	42	60	49	46	50	38	49	51	47
CTTGTCATGTGACATT	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
CCTTACTTCGTGCATT	ref_396_upstream	13	18	21	23	17	10	24	13	23	14
GTAATGGATGATACGC	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
TTATGGAGGCCCTCTA	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTATTCCGTGCCC	ref_396_upstream	17	29	8	11	29	6	36	10	12	6
TCCAATGGCCTTGCTT	ref_396_upstream	15	8	20	14	12	11	7	14	14	11
TTCGGTTTTCTCTTCT	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
TATGTAGCTTTCAATG	ref_396_upstream	14	14	22	14	12	15	10	12	11	13
CTGATATCTTAGTGAT	ref_396_upstream	28	28	36	28	31	29	20	30	33	30
TGCGGTATATTTCTTA	ref_396_upstream	19	11	21	15	10	16	12	19	11	10
TGTGCTGTGCCCTGGG	ref_396_upstream	106	93	138	123	82	130	98	102	87	107
TTTTATATGCTCGGTA	ref_396_upstream	96	76	116	108	70	84	99	98	78	72
TCCCGGTTGCTACTCC	ref_396_upstream	21	2	17	5	18	10	9	17	12	12
AGTAGGCCATAGATAC	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
TGTCATTATTGGTGCC	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTACTGCCGCCTG	ref_396_upstream	46	58	65	63	56	73	58	52	48	53
GATTGCGTCCCCCGGT	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTTTCCGGTTGGG	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGCTTTACCTCGG	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCCTACTCCCTCA	ref_396_upstream	0	2	0	0	3	1	1	0	3	0
CTTGCCTAGCTCGCCC	ref_396_upstream	10	17	16	19	11	12	9	14	12	13
GCGGCACTTCTAATAC	ref_396_upstream	2	1	4	3	6	6	0	4	1	0
TCATTTGCTAATTATG	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
TATCGACATATTGGAA	ref_396_upstream	51	28	58	47	32	48	22	49	43	42
CGATTCTTAGAGTAGT	ref_396_upstream	76	71	113	71	76	76	67	82	66	82
CCCAATCCCTACCATG	ref_396_upstream	35	50	37	44	46	35	59	28	26	43
TTAGTACACCCGGACT	ref_396_upstream	5	16	3	8	15	5	18	5	18	7
AGAATCCCTCATGTAT	ref_396_upstream	271	203	290	221	207	234	219	207	238	259
GTCCTGCCAGGGCGCT	ref_396_upstream	148	121	194	149	132	134	130	133	137	130
CACACCACCCTTACAT	ref_396_upstream	31	25	41	34	20	25	30	36	27	19
TAGTTGATTGTGCAGG	ref_396_upstream	5	3	2	5	7	5	6	7	5	3
GTGTCTCGGACTCCGG	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCTACTCGTCCCC	ref_396_upstream	33	39	49	37	28	35	34	37	33	24
TGTCCACACGGTGGTT	ref_396_upstream	10	8	3	13	6	6	7	4	5	5
GATCTGGTCCTTCCGG	ref_396_upstream	90	79	115	90	66	96	67	81	87	100
GATTTGTTACGTGTAT	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCTAGTTGGTGGA	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
GTATGTATACCAGGTA	ref_396_upstream	47	35	59	46	30	34	27	40	32	40
GCCATGGTTATCTCGT	ref_396_upstream	99	89	121	112	78	79	119	86	85	92
GTACTTGTTTCGGACG	ref_396_upstream	54	44	63	42	45	60	32	43	36	47
ATCTATTTTATTAAGT	ref_396_upstream	7	18	20	10	10	20	10	13	16	14
CGCTCAGATCGCTTCG	ref_396_upstream	78	61	87	86	64	81	70	92	67	91
GTATCCTCGTAATTCC	ref_396_upstream	38	19	34	24	27	31	25	27	27	26
AAACGTCAAGGCGGGT	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGGAGTACGGGGC	ref_396_upstream	56	26	43	52	32	34	31	37	34	46
TCTGCTTAATTCGGCA	ref_396_upstream	6	6	4	9	5	10	7	5	7	3
TTCAGGGACGGTCCCC	ref_396_upstream	113	84	114	100	84	108	93	103	90	91
GCCCAAGCGGCTCTTC	ref_396_upstream	58	76	79	56	49	71	60	62	69	50
TGTTAAACCACCGCTC	ref_396_upstream	14	8	15	13	7	13	13	19	13	6
TGTCATACCCTTATTT	ref_396_upstream	53	24	57	52	33	43	37	34	35	51
GTCCCAGGGGGAAGAT	ref_396_upstream	36	11	33	16	10	22	23	25	28	24
CCGCTACTACCGCCTG	ref_396_upstream	98	105	156	133	132	117	136	126	137	96
CTATGTGACTGGATAT	ref_396_upstream	6	2	6	9	10	4	6	5	3	5
GGGCGGACAAAGTCGG	ref_396_upstream	21	14	12	12	14	12	12	13	9	8
CTGAAGCCGGACAGTT	ref_396_upstream	0	0	0	0	0	0	0	0	0	0
AAGCCGGCATCGAGTA	ref_396_upstream	68	46	95	61	58	55	52	65	51	68
AGCACCTTTGCTTGTC	ref_396_upstream	34	16	29	28	10	20	10	22	22	22
GGATACATGTGTTTGA	ref_396_upstream	27	28	50	30	27	31	25	36	35	42
TATCAAGATGGCAGCT	ref_396_upstream	35	31	51	41	27	27	25	18	26	32
TGTCATCACTATACCC	ref_396_upstream	12	8	17	21	16	17	17	14	9	11
TCTCCACGTTTGTTAC	alt_1762_reverse	17	45	36	30	52	24	41	27	30	31
TGAACCCGACGTCGGC	alt_1762_reverse	22	25	25	19	37	15	40	24	17	20
CACATTAAATGTAACC	alt_1762_reverse	19	28	25	27	44	20	19	17	39	18
TAGATACCGCTTTCAC	alt_1762_reverse	7	15	11	7	14	7	16	14	7	7
TATAAACACTGAGTCT	alt_1762_reverse	22	30	21	20	29	15	35	12	29	28
TGTATCGCCGCGTTTT	alt_1762_reverse	21	23	14	25	24	15	32	13	35	14
TATCAATCTGGAATGA	alt_1762_reverse	9	8	3	15	9	6	14	9	10	6
GGACACACTGTACAGT	alt_1762_reverse	16	22	15	21	26	16	12	15	24	14
ATCTGCAATCTAACTG	alt_1762_reverse	19	33	34	32	42	14	45	32	52	28
GTCCTATCAACAACAT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCTTATGGGGACCTAC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTTGCCCAGGTTT	alt_1762_reverse	2	2	5	1	2	1	3	1	3	1
TCGATCGCTGTTCGTA	alt_1762_reverse	9	19	11	5	18	15	17	11	13	10
GCTCTCTTGGCCCGCC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGTAACGTTGCAC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TCTACTATGGTCGGAC	alt_1762_reverse	5	9	4	4	11	6	7	6	12	2
GACGGACGAGCTTTGT	alt_1762_reverse	25	19	18	18	23	13	21	13	30	17
TAAACCCGGTATGATG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGGACCAATTCCC	alt_1762_reverse	66	110	87	82	124	62	113	70	131	54
CGCATTATGCTCATCC	alt_1762_reverse	10	35	31	19	35	19	43	11	40	19
ACTAAGGATCTGGGCG	alt_1762_reverse	7	16	16	11	15	13	11	11	19	16
GCGCCGCGAAGCTGCC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTCTTGGCCCGCC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTGGACTGTCCAGTCT	alt_1762_reverse	279	346	312	248	374	240	376	233	397	197
CAGATGCTTACTATTG	alt_1762_reverse	14	26	18	13	22	14	21	18	26	16
AGGCCATTTTAACGGA	alt_1762_reverse	15	15	15	7	18	9	14	13	27	11
GTGTCCCACTTTCTCC	alt_1762_reverse	10	16	13	10	14	12	11	10	17	13
TTTCCCCATCGAAAGG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GAGATAACGTCCCTGG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ACATAGTATAAAGTAC	alt_1762_reverse	1	1	0	0	0	0	0	0	6	0
CTATTGCGGTACATTC	alt_1762_reverse	39	68	71	48	75	46	74	49	73	49
ATATGGTATCTGTTAG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGGTGCATCCTCT	alt_1762_reverse	1	6	5	4	4	8	9	6	6	4
TACATGGACACCGATA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GGTAGCTTTGACCCTG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CTATAGATTGCCTTAC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTTTCTCATTGCT	alt_1762_reverse	18	20	23	21	22	23	26	17	25	13
TGTTATTCGATTCCCA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TATTGTCCTGTTTTAG	alt_1762_reverse	46	63	56	45	56	41	57	38	85	47
TGATGAGTTAGCGTGT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCGATCTTTCGCC	alt_1762_reverse	59	91	84	70	94	69	121	70	103	67
CTCAATGGCCATAGCA	alt_1762_reverse	17	42	15	24	40	31	33	14	36	9
CTTACATGGACTTGGC	alt_1762_reverse	5	23	12	9	7	7	13	11	19	10
GCTGTTCGCGGCCATT	alt_1762_reverse	46	59	70	60	71	46	60	44	70	46
TCGCCTTGTAATTTGG	alt_1762_reverse	11	18	22	12	12	14	24	20	21	15
CCGCGATTGGTAATTG	alt_1762_reverse	284	319	296	259	320	245	370	234	359	217
TCTGGCAAGAGGTCGT	alt_1762_reverse	15	22	17	14	19	18	28	11	29	12
ATTCTCGGATTTGCTT	alt_1762_reverse	16	17	33	20	18	22	19	18	14	14
ATCGTTATTACTCAGC	alt_1762_reverse	9	6	5	7	8	5	11	12	9	6
ATCAAGGTGTTCTTGC	alt_1762_reverse	25	26	20	17	27	15	26	15	29	16
AATCATTTCCTATGGT	alt_1762_reverse	24	23	24	21	24	13	30	33	16	18
ACTAAGTAGGTCTGTA	alt_1762_reverse	16	32	25	27	41	15	40	14	47	24
TTGAAGAGCTACGTGC	alt_1762_reverse	120	145	146	105	184	131	186	113	181	93
CTGTGCGTTACTTTTG	alt_1762_reverse	56	78	61	66	72	56	89	48	80	46
TTTAGCTAAATTATAA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CTCCCCGGGTGATGCA	alt_1762_reverse	3	55	3	10	65	6	61	7	65	1
TCAATTGACGTGTGCG	alt_1762_reverse	9	8	9	10	5	7	10	3	14	7
CCGTCCACAATCGCCC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAAGGAGTGATAA	alt_1762_reverse	41	112	54	39	125	38	98	35	130	46
CACTTGTCGTTGGCCA	alt_1762_reverse	28	102	53	39	91	40	83	42	85	31
GCACCCTGAGAACACG	alt_1762_reverse	8	8	4	4	13	4	8	3	11	3
AATCTGGGTAACTTAA	alt_1762_reverse	12	8	9	11	20	5	20	17	21	12
TTGCATGAGGCGATTA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ACATGCACACTAGGAG	alt_1762_reverse	1	0	0	0	0	0	2	0	0	0
TTCGGTATGCCTGTCA	alt_1762_reverse	53	40	48	28	78	44	57	36	76	41
TTGTCTAGCTGTTATT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TCACCAACCAGTCCGT	alt_1762_reverse	5	1	3	5	1	3	4	3	1	6
CTTTCGCACCGCCCGC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
AAACGAAGGACAATAG	alt_1762_reverse	6	6	5	7	9	6	5	4	8	2
TATAAAGCGGGTTGTG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CTACATTGTTCGTGTG	alt_1762_reverse	0	0	1	0	3	1	1	0	0	1
GAGTATCGGCACAAAG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTCATTAGGAATT	alt_1762_reverse	10	11	11	8	13	12	15	6	8	10
GACATTCAGGTACCGA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCGCTACTCTGCT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTAACTGGTCTACAGT	alt_1762_reverse	9	30	5	14	25	8	20	14	33	8
CGTGCTGACACTACCC	alt_1762_reverse	18	46	26	23	25	28	36	15	47	20
TTCTCGCGAAAGGACG	alt_1762_reverse	57	85	63	67	79	45	97	53	87	51
TTTATAGATAATTGAC	alt_1762_reverse	3	10	10	6	2	3	10	2	10	2
TCGTGTACGAACATTC	alt_1762_reverse	13	13	17	15	15	9	25	15	13	21
ATATGACGAGCTTCCC	alt_1762_reverse	101	126	106	85	114	85	141	85	144	119
CATGAAGCCTAGTGGG	alt_1762_reverse	2	6	6	4	6	5	12	6	10	5
GGGTTTTTAGGACTTT	alt_1762_reverse	47	67	60	53	80	46	69	48	73	39
GTGCATAGACTCTCGA	alt_1762_reverse	22	38	48	26	43	24	40	19	42	26
TAGTGTCTCTCGTCGT	alt_1762_reverse	4	7	9	11	9	5	15	7	10	6
CGACCTGCCGAGCAAC	alt_1762_reverse	55	92	72	69	93	53	89	60	88	65
ACAGTAGACGTCACTC	alt_1762_reverse	1	2	2	0	3	1	2	1	2	0
TACCGGCTCGCGGATA	alt_1762_reverse	14	19	19	9	31	22	31	13	41	13
TCACGGCACGTAACTT	alt_1762_reverse	19	32	25	26	38	23	31	14	44	22
CCGTTATATTTCAACA	alt_1762_reverse	6	26	21	23	22	15	18	14	19	17
AAGCGGGCAGCGAAAG	alt_1762_reverse	34	40	46	36	56	31	44	31	72	38
CCGAGAAAACGCATTA	alt_1762_reverse	36	56	38	31	58	29	62	43	58	34
ATGGACTGTCCAGTCT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGGGTAGCGGACT	alt_1762_reverse	16	29	31	19	25	15	26	19	35	27
TACTTGAGCTACCAGC	alt_1762_reverse	72	135	124	92	156	101	122	95	144	81
TTTCAGCTTAGAACCC	alt_1762_reverse	130	267	159	130	296	131	257	122	312	118
CTGGTGGTCCTCCTTG	alt_1762_reverse	52	52	40	38	68	52	68	43	53	42
ACGCTGGCGAATATTA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTAAGTTTTCAGCTAG	alt_1762_reverse	7	32	12	19	19	14	21	7	17	14
GCACACAATCGGGACC	alt_1762_reverse	14	23	13	19	12	13	21	14	32	19
TAATGGTTTTGGACAT	alt_1762_reverse	32	58	50	42	69	46	67	41	65	38
CTAGGCGAATCTTGTT	alt_1762_reverse	26	27	21	20	38	19	31	20	41	12
GCAGTTTCAAGTAGGT	alt_1762_reverse	29	43	36	36	32	28	54	29	38	34
GTGGCAAATCTATAGT	alt_1762_reverse	23	19	25	19	19	19	35	20	34	17
TTCCGTCTGAACCTCT	alt_1762_reverse	9	12	8	17	17	11	12	12	9	14
GGTATCGGGGCACTTG	alt_1762_reverse	5	4	5	13	8	3	4	10	8	2
ATATGACTCCAAATTG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCTTGTAAAACAA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
AAGCATTATAATTAAT	alt_1762_reverse	14	37	29	17	35	20	26	29	28	21
AGAAAAAGATTTCGGC	alt_1762_reverse	51	61	70	65	71	71	89	59	89	39
GTTGTATTTAAGTAAT	alt_1762_reverse	14	36	17	11	19	12	17	14	17	12
ACGAAGCAGCTTTTAT	alt_1762_reverse	26	30	32	37	27	23	28	18	33	28
TCTTCTCATGAAGTAG	alt_1762_reverse	30	50	43	27	76	31	45	40	50	35
CAGCCACTGGCCTTAT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTTAAATACGTAG	alt_1762_reverse	0	9	6	6	4	2	4	1	3	1
AATCGTAACGCCTCTA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATGTCTTTCCCAACGG	alt_1762_reverse	184	292	227	192	287	200	257	170	308	189
CGGTACGGTCGCCGAT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
AATTTGGTCAACAATG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCACTACCGCGT	alt_1762_reverse	0	1	1	1	0	2	1	1	2	0
ATGTAGGTTTTTCAAA	alt_1762_reverse	24	45	40	35	36	42	46	32	50	32
TCTGGTTAGTCATGTT	alt_1762_reverse	8	10	11	7	11	7	8	13	8	4
ATAAGGGGTTTGCTCT	alt_1762_reverse	79	89	75	69	78	59	93	61	90	74
CCTGCTATCTGCTTCA	alt_1762_reverse	76	142	94	69	102	65	160	54	129	72
CGGGCTCCGTGGATGC	alt_1762_reverse	36	51	48	44	62	40	61	46	61	38
TTTATTGACACCATGC	alt_1762_reverse	46	99	51	63	112	59	86	50	103	46
CGTTACTCGGTTTAAG	alt_1762_reverse	95	159	110	94	172	108	131	99	151	83
GGATTTGTTGATTAGG	alt_1762_reverse	16	18	19	15	21	17	16	11	15	7
TAAGTGCAAGGTCATC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TTTCACCGCTGGTTAT	alt_1762_reverse	30	33	29	29	38	28	41	18	36	22
TCCCCCGGTACCTTTA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTAGCATGCTCAT	alt_1762_reverse	37	49	67	47	47	25	70	56	64	39
TGGATGGTCCGTAACT	alt_1762_reverse	68	106	103	83	102	75	129	79	135	69
ATGTCGCCAGTATCGT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAGGGGTATCAGG	alt_1762_reverse	15	10	21	17	20	14	19	16	13	12
TGTATGGTTTGTTTCT	alt_1762_reverse	13	14	10	11	12	6	19	9	13	6
CCTATCTGAAGATTGC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTGTTATGAGCAA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCGTGATGTGTTA	alt_1762_reverse	51	91	70	61	91	48	108	48	93	58
GCGAGGCATTATAATG	alt_1762_reverse	9	24	18	9	21	5	30	6	15	5
TCGTCAGCGCACTATC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TAGCATCTTGTTATTG	alt_1762_reverse	38	73	42	51	66	46	67	49	68	26
ATTGAGTGGCTGTACG	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TACAAGCGGGGCTTGG	alt_1762_reverse	11	17	8	3	16	8	23	13	20	7
GTTTGGTAGGCACACA	alt_1762_reverse	41	54	39	27	60	46	79	31	53	21
TGGCGTGTTAATTGTA	alt_1762_reverse	3	8	6	9	3	2	6	13	13	6
TTTGGTGCCATTCGGA	alt_1762_reverse	15	20	19	9	29	17	32	18	26	5
TATCTTTCCCCGTAAG	alt_1762_reverse	2	3	0	0	5	2	6	1	3	2
TTAAATAACTGTCATG	alt_1762_reverse	8	10	9	3	21	10	7	8	10	6
GTCATCTACTACATGA	alt_1762_reverse	19	44	34	10	30	25	31	20	38	19
CGCCCAAGTTTTTAGT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCAGCGCACTGTC	alt_1762_reverse	256	447	319	256	452	236	427	227	504	225
GGCAGCTACCAGTCAT	alt_1762_reverse	23	25	17	12	22	14	27	20	30	14
TTTGGCTTGTATTGTT	alt_1762_reverse	42	50	38	37	56	41	66	37	63	50
GAAATCGACGTGAAGC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TCATTCATGTATGATT	alt_1762_reverse	7	23	15	12	19	16	23	8	20	14
GAGTGTAAATAAGCCC	alt_1762_reverse	211	262	247	162	233	179	245	165	265	141
CCACGGGTAATCTGTC	alt_1762_reverse	28	54	33	26	44	22	61	26	65	35
TGCATTACATCGCGCC	alt_1762_reverse	12	6	13	8	14	7	6	11	9	7
CATTAGGTTTTGAGCC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
ACATGATTAACCACAA	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
AGGAAATCGAGAGGCT	alt_1762_reverse	40	55	55	56	55	37	59	44	76	35
CTGCTTTGGTCGTTGT	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
CCACCTGACGTGATAC	alt_1762_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAACCCGTAATCA	alt_1762_reverse	4	14	11	7	11	4	10	8	8	8
CCGTCTATAATAACCG	alt_1762_reverse	2	17	1	3	15	2	14	2	7	1
ATATAACTGAGGCTTA	alt_1762_reverse	25	40	38	37	34	26	33	26	24	18
GTAGAGATGTTGGAAG	alt_1762_reverse	43	42	33	21	45	30	57	32	53	36
ACGTCTGAAGCTAAGG	alt_5625_new	0	0	0	0	0	0	0	0	0	0
TGTAATTTCTAGCCTG	alt_5625_new	45	83	41	29	89	42	78	27	101	43
ACGCGCTTTTGGGCTA	alt_5625_new	32	101	47	61	88	42	78	40	86	39
CTAGTCCGGGTGCGCT	alt_5625_new	26	43	29	23	44	21	49	18	56	26
GGACGCGGGTAAAAGC	alt_5625_new	15	14	17	15	20	4	19	10	12	12
AATTTTTACTCAGCCG	alt_5625_new	0	0	0	0	0	0	0	0	0	0
GGAAGGAGGCTTTCTT	alt_5625_new	0	0	0	0	0	0	0	0	0	0
TCTCCTTTTACTAACT	alt_5625_new	109	173	124	95	159	87	166	95	199	87
CTTTTCGTGGATTAAC	alt_5625_new	19	28	11	18	26	13	27	10	27	9
GGGTTTATCTTTTCCT	alt_5625_new	0	0	0	0	0	0	0	0	0	0
TGAATCACCGTCTGCG	alt_5625_new	61	101	67	52	110	59	106	67	129	68
CCTCATGGTAATTGTG	alt_5625_new	32	79	41	32	67	20	75	27	74	25
GAATATAGCTTGTGTA	alt_5625_new	5	15	9	7	19	11	12	4	18	4
TAAGTTGGACTAATCA	alt_5625_new	16	34	25	8	24	12	19	13	20	12
GTTGTGTTTATACCCA	alt_5625_new	52	62	46	36	73	44	81	41	121	33
CCACGCGGGATTTGTT	alt_5625_new	11	26	8	12	21	10	21	6	16	9
ATCGCTATTGCTTAGA	alt_5625_new	85	142	93	63	163	86	162	60	164	73
CACCGTATTTTAATCT	alt_5625_new	14	30	16	16	20	13	45	12	28	7
CGTCGTTTCCCATGCG	alt_5625_new	17	28	27	11	41	10	30	13	31	21
GCTCCCGCATATGCCG	alt_5625_new	0	0	0	0	0	0	0	0	0	0
AGATCTCTTGGTCTCC	alt_5625_new	122	181	130	83	149	105	179	104	170	97
ATTCTTGGCTGAGGAT	alt_5625_new	0	0	0	0	0	0	0	0	0	0
TATTATGTTCTAGAAC	alt_5625_new	0	0	0	0	0	0	0	0	0	0
CCATTACCCCGACCAT	alt_5625_new	37	61	25	29	61	12	53	30	52	14
TTGTGAAGTTTTTTCA	alt_5625_new	12	26	11	9	25	13	25	21	27	14
TTGCTGTGTTTCCGTA	alt_5625_new	8	15	13	10	15	6	20	11	11	7
AAGAAGCGCTTAATCA	alt_5625_new	13	30	19	22	21	22	28	11	23	13
TCGCTTTTACGAGTGA	alt_5625_new	17	28	30	14	42	17	26	11	26	16
TCTTGGCGAGTGCTGT	alt_5625_new	0	0	0	0	0	0	0	0	0	0
GCTATCCTAGGGGCGA	alt_5625_new	0	0	0	0	0	0	0	0	0	0
GTTATTTACTCCTCTT	alt_5625_new	101	175	127	101	205	106	183	109	190	77
TATGTGCATGTCATGC	alt_5625_new	3	17	11	1	11	6	16	6	19	7
CCACAAACCTGACCAA	alt_5625_new	2	2	2	4	3	6	9	2	3	4
ATTATCAGCATGCTAA	alt_5625_new	41	83	45	34	75	52	101	42	89	47
ATCAATTGGGGGGCCG	alt_5625_new	11	14	11	6	10	11	18	12	17	10
CATTAACCATTTTGGA	alt_5625_new	8	20	21	17	13	11	27	12	19	11
CCGTCCTATAAGATAT	alt_5625_new	13	28	10	9	16	13	34	6	45	10
CAAGTTGCAACGTCTA	alt_5625_new	13	20	14	6	21	6	17	8	29	6
TGCGGGGTATGGGTCG	alt_5625_new	51	82	62	68	87	52	103	58	96	58
CGGGTTGAATTATATA	alt_5625_new	66	119	79	72	149	62	138	75	107	49
GATTCCATCTTCCTCG	alt_5625_new	8	13	9	20	25	17	14	16	19	11
TACTCATTTAGCCGAT	alt_5625_new	20	52	43	27	62	17	53	26	61	19
CTCCCTAACCTTCATT	alt_5625_new	3	21	4	2	22	5	25	4	37	1
ATGGCTTGTTTATGTA	alt_5625_new	0	0	0	0	0	0	0	0	0	0
ATGACGTGAACGGCAA	alt_5625_new	0	0	0	0	0	0	0	0	0	0
TTTCTCCCCGGTATGT	alt_5625_new	0	12	1	2	11	2	19	0	11	2
TACTACAAGGATAAGA	alt_5625_new	16	21	21	17	32	17	35	17	32	17
GGGCTACTAGCGAGAG	alt_5625_new	0	0	0	0	0	0	0	0	0	0
TTTTATGCAGCATGCC	alt_5625_new	24	44	28	13	43	21	28	15	33	24
CTTCCGATGGACTCTT	alt_5625_new	50	82	68	57	103	52	90	47	100	39
TCTCATACCATTTTGC	ref_1643_upstream	28	43	30	21	54	27	44	29	52	35
GAACCCAGATCGAATG	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
GATCCATTGTTGGTCG	ref_1643_upstream	7	9	5	4	14	5	5	7	6	4
ATCGGCACTCTCCTAG	ref_1643_upstream	35	45	42	37	58	34	54	27	61	36
GGTTTATTACCCGATG	ref_1643_upstream	10	7	7	12	14	8	12	7	11	5
CAAATTTTTGTGTTTT	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
GATAATTTGACTTGTG	ref_1643_upstream	12	17	11	14	14	11	23	7	20	19
CTGCGCTTTGATCTTT	ref_1643_upstream	35	46	46	32	42	39	33	23	36	49
TCCCTTTGACTTGCTT	ref_1643_upstream	28	31	40	27	31	26	39	27	39	28
ATATTGTCCCAGCCTA	ref_1643_upstream	18	37	23	21	34	21	32	21	34	20
ACTGGTCACTCTCTCA	ref_1643_upstream	4	5	1	2	4	4	3	3	2	0
GCGAACGTTAACCTGC	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCGTACTCTCAGC	ref_1643_upstream	15	35	18	14	33	13	39	19	43	12
AGCTACGGAAGTATCA	ref_1643_upstream	10	9	11	7	15	15	13	7	12	7
GCGCCAGAGGTGTAAT	ref_1643_upstream	1	3	2	1	2	0	4	1	3	1
CGTGACTGAAGTTTCA	ref_1643_upstream	0	2	0	0	0	1	0	0	0	0
GAATCTGCATAGATAC	ref_1643_upstream	10	20	21	10	21	15	15	17	20	17
GATTGTCCATTACTTG	ref_1643_upstream	37	47	40	26	37	39	47	26	52	23
GCATCTATGTGGCTTC	ref_1643_upstream	3	3	4	2	7	3	2	1	4	0
TTACCTTGCTTACGTT	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTTAGACTCTTTT	ref_1643_upstream	22	17	16	23	23	13	31	8	28	9
GGTCGAGTACATTTAT	ref_1643_upstream	35	50	32	23	44	22	35	22	57	28
TGTACGCCTGTATCCT	ref_1643_upstream	10	18	17	12	14	12	24	10	24	16
CAATGCTGTTCGAACC	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
CGTCATCTCTATTAAA	ref_1643_upstream	15	7	18	9	17	10	17	11	15	13
AAAGGCCATAGCGCTT	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTGAACACGAAA	ref_1643_upstream	60	71	59	53	64	50	79	58	58	38
GTACATCTCGTAGGTG	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
ACATCTCCTGGACACA	ref_1643_upstream	130	187	168	147	224	130	207	128	186	146
AGGTTACCAGTTGACA	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
TAGTATTCTCAGATGG	ref_1643_upstream	29	45	42	28	55	28	54	27	46	20
ACGTAATTCTTGTTGA	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
TGGGACCTGCTGTGTG	ref_1643_upstream	8	12	16	13	15	7	15	15	14	10
GTGAAAATACAAGCGC	ref_1643_upstream	68	82	82	55	83	61	110	53	82	65
GTCCCCAGTTGCAAGG	ref_1643_upstream	4	12	12	14	8	8	18	14	20	11
TCAGCGGGAAACTAGG	ref_1643_upstream	83	98	93	79	103	70	97	80	98	71
GTTGCCATACATTTCC	ref_1643_upstream	6	15	12	13	11	13	9	9	16	10
CTGCCCCCGTCAGTCT	ref_1643_upstream	7	30	10	19	50	15	33	7	34	7
GCGATCCTTGGGAATA	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
AGACCTCACCTCTGAG	ref_1643_upstream	4	8	9	6	6	5	6	3	3	6
ACATTTCTATTAGCGC	ref_1643_upstream	57	75	81	58	71	61	89	40	54	42
CACACATCAACTGCTT	ref_1643_upstream	7	11	9	5	7	3	14	7	15	6
GCGATATGAGTATACG	ref_1643_upstream	13	14	8	9	20	9	8	17	13	15
AGCAGCAGATTTCCCG	ref_1643_upstream	3	11	18	5	5	5	8	2	10	5
GGCGGTTTCGCCTCTA	ref_1643_upstream	25	29	36	30	36	24	28	14	33	28
CAGCATTCTGTGTGGA	ref_1643_upstream	8	26	8	11	18	17	11	8	25	8
GTCACAAGTCGGGGTT	ref_1643_upstream	185	217	222	157	238	179	229	146	228	150
AGCGATCTCTTGTCTG	ref_1643_upstream	8	4	9	10	10	11	15	8	14	8
ACTATGCATGGAATTC	ref_1643_upstream	12	15	22	4	16	13	25	19	14	7
AGCCAGCCATTTGAGT	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTACCGGCTCGAC	ref_1643_upstream	16	29	20	30	24	25	30	12	41	22
TTCTATTCGGCCTGTT	ref_1643_upstream	15	25	15	10	28	26	31	15	20	21
CCCGTCCTATCCTGGT	ref_1643_upstream	46	37	40	34	46	36	60	32	33	24
TGTCATTGGGCTTGTC	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
CGGCATGAGAGTATAG	ref_1643_upstream	14	7	5	7	8	9	6	10	13	11
TAGCTTGGCCGGACAT	ref_1643_upstream	44	58	40	38	49	38	47	30	43	37
TGAACGTTGCTGATAC	ref_1643_upstream	5	2	1	4	6	2	5	4	6	4
AGCACGCGCCCTACGG	ref_1643_upstream	7	7	12	2	12	10	13	5	9	6
CGCCCGGTACATTTGT	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGAATTCTCGGAC	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
CCAACATTGGTCTGGC	ref_1643_upstream	40	47	55	43	61	26	50	34	60	25
GTGTCTCTGGAACCCC	ref_1643_upstream	13	25	19	19	28	18	24	19	27	17
GTGGGTGGGACCATCG	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTCAGATCTCCTT	ref_1643_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCTGCGCAGTTCA	ref_1643_upstream	88	139	116	103	158	99	139	100	168	79
TATGTAGACTTCAGCT	ref_3406_RC	30	54	47	31	59	19	79	28	73	29
TATTCAAGCAGTTTAA	ref_3406_RC	24	32	17	13	28	10	31	13	34	13
TGTTTATCCCTTCAAA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TTTTAACATCAGAGTT	ref_3406_RC	36	52	23	24	68	18	54	29	57	16
ATACGTATCCATACAA	ref_3406_RC	8	14	10	8	13	5	16	4	13	3
GTTATCGCTTCCTTAC	ref_3406_RC	34	78	44	41	61	30	67	37	52	27
TTCATGCTTAACCCTA	ref_3406_RC	3	15	5	4	19	5	10	7	16	5
GGCCTTATTATCGAAG	ref_3406_RC	7	22	11	10	17	10	16	5	25	10
GACCGCCCTCTGGTGC	ref_3406_RC	9	16	10	4	20	11	15	5	19	2
GATGGCTTTTACCCAT	ref_3406_RC	2	0	3	5	4	2	1	2	1	2
TGGCTTTATCGGACGT	ref_3406_RC	6	14	8	13	9	3	14	5	25	6
GTTCTCAGTTGAACCG	ref_3406_RC	14	37	18	20	38	11	32	15	32	17
ACCGTCGGCATCCTTT	ref_3406_RC	17	35	16	16	41	9	31	18	56	14
CAAGAGATCTACTCCT	ref_3406_RC	17	35	28	12	20	11	27	5	18	4
TACGGCCAGCCCTCAT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GCGCGTCAGTGACGCA	ref_3406_RC	14	18	15	3	17	10	22	14	26	12
ACAAAACACCCGGCAA	ref_3406_RC	11	34	10	21	28	20	32	15	38	18
TCCCACTCGAGTTCCC	ref_3406_RC	3	2	1	1	3	1	2	2	1	2
AGTTAGAATGTCCGCT	ref_3406_RC	19	20	21	20	29	14	26	16	32	18
TTTTATGGTTCCAGTT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TTATCAGTTGTTCCTA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CTCGTGTTTTCTAGAA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TTACCCGTAGGAATTG	ref_3406_RC	47	76	25	35	67	24	111	40	83	24
GCTCCGTATAATCCGA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CATAGTCAGCTTCCCG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CTGTTCATAGTATGCT	ref_3406_RC	17	31	14	15	41	11	30	18	37	23
GCTCCGCTTTCATTCT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
ATCTCTTTCGCCTATT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GTCCACCCATAGGGAG	ref_3406_RC	11	13	7	4	12	7	21	10	17	9
TAAAGGGGTTGACACA	ref_3406_RC	52	95	62	53	71	60	104	58	92	48
ACTCTTACCGACTGCG	ref_3406_RC	4	5	4	7	8	6	10	7	12	3
GGTCTGATGCAGTAGG	ref_3406_RC	8	13	18	14	30	16	23	6	37	16
TTGCATGTAGTTCTTT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TTGATGATTGTTCCTT	ref_3406_RC	8	13	12	14	11	6	25	9	19	5
AAGTCAGTACAGTTAA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TTCTGGATTTTGAGCC	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GGAATGTTCTTACTTC	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CCCAATTACTGTGGTT	ref_3406_RC	1	26	7	4	22	4	32	3	36	1
TTTGATCATTTGCACG	ref_3406_RC	21	36	29	21	65	24	59	23	54	25
CGGGCTATCACATATT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TAAGGGTTTTAGGTGG	ref_3406_RC	7	4	6	6	10	6	10	2	11	7
GTGCGTCATATGCGTA	ref_3406_RC	24	58	26	22	65	23	55	27	65	19
ATAGAACTTCTTCCCC	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TTCATCTGGCATATCC	ref_3406_RC	2	3	2	1	4	0	5	5	9	1
AAGGAATTCACCCGTT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GCTCATCCGCCCGCTT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CTGCATAGCACCTCTA	ref_3406_RC	6	19	15	18	7	7	12	8	19	10
CCCCAGTTGCCGGCCC	ref_3406_RC	102	158	123	101	190	92	210	96	180	108
TCTGCGGGTTCGAGTT	ref_3406_RC	39	70	39	36	60	40	44	46	73	24
GTCTACTATATCGTTT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CCGCAATATCTCGTGG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
AAGGTTGAGTTCAGGC	ref_3406_RC	6	14	10	4	16	12	13	7	9	5
CATCGTACTTTCTATG	ref_3406_RC	16	28	7	7	24	9	17	10	20	7
GGCTCTGTAACGATTT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CTTTTCTGATATGAAA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CGTCGTAAAGACACCT	ref_3406_RC	0	4	0	2	1	2	3	3	7	1
TGATCCCCCGGCTCCC	ref_3406_RC	51	74	54	42	57	33	97	33	75	34
CCAGAAGAGTTAAGGT	ref_3406_RC	7	4	1	1	2	1	0	0	3	0
TACCCTGTTGAAATGA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GCCCGTAAGCATGACC	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GCATGCATAATGGGTA	ref_3406_RC	5	9	1	3	9	1	7	5	8	2
AGGTAAATTAGAGCAA	ref_3406_RC	50	132	57	52	118	52	97	45	120	51
TTTCTCTGCTCGTGGT	ref_3406_RC	186	376	285	197	348	225	366	201	392	165
CCCCAGTTGCCGGCCT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
ACCTAGAGAGGTATTC	ref_3406_RC	27	100	34	43	79	34	76	52	91	25
AGTGGCAGCGTATATC	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TGAGGTTGGTGTAAGT	ref_3406_RC	18	29	28	18	37	27	41	16	51	21
ATAGTATCCTATGCTG	ref_3406_RC	11	12	13	13	22	7	27	6	20	5
AAACCGCACCAAACTT	ref_3406_RC	24	43	19	22	41	24	45	31	36	17
ATCCTAGCTCTTACAA	ref_3406_RC	17	17	17	21	42	10	33	13	32	14
GACTTCACGGCTCTTC	ref_3406_RC	2	4	6	3	3	1	3	3	2	3
CTGATGTTTGGCCTAT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
AATTGAATGTCCCTGG	ref_3406_RC	4	7	2	10	8	4	4	6	15	10
GCGCGAAGCCATACGA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TCAGGCGTGAGTTAAT	ref_3406_RC	11	17	13	6	25	8	17	3	17	10
TCTTGATTTGTATCTA	ref_3406_RC	4	9	8	8	6	6	9	4	10	8
CATGTAGAAATTAGGA	ref_3406_RC	15	31	24	20	31	20	29	12	52	13
CAAGTGGCTAGTACCG	ref_3406_RC	20	37	14	16	25	12	23	13	17	9
TTTAGGGTCTCTATGC	ref_3406_RC	3	18	13	10	12	8	16	6	15	12
ATATGCCGCATGGCGA	ref_3406_RC	0	0	0	0	1	0	0	0	0	1
GGTCTCCCGTTGTGCC	ref_3406_RC	3	15	8	2	14	7	12	1	22	5
AATGGGACCGAATCGT	ref_3406_RC	13	17	12	17	21	19	37	15	28	15
ACTAAGTTCTCTCCTA	ref_3406_RC	10	20	9	5	26	10	21	4	14	6
TTAAGACGGTGGTGGG	ref_3406_RC	12	28	19	8	20	13	20	19	20	26
TTCTTCACATCCATAG	ref_3406_RC	0	11	6	2	11	2	11	5	9	5
ATAGAGTCTACGGATA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TATAAGTCCTCGTACG	ref_3406_RC	10	13	9	11	26	3	22	5	18	7
TGGCCCGGCAAACATG	ref_3406_RC	23	41	34	29	36	26	57	28	58	21
ATTGCAGGTCCTGAAC	ref_3406_RC	7	4	5	9	5	1	2	2	3	5
GTCGCTTCATCTGTTA	ref_3406_RC	4	15	14	9	16	11	12	10	18	11
TTGATTGTGTCCCCTA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TCGTACATTTGTTGTC	ref_3406_RC	27	30	28	26	23	17	39	20	27	19
TGTACTACCGCGGACG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
ATTCCAGAGGCATGGT	ref_3406_RC	31	50	37	20	59	29	59	33	54	27
CGATTGTCATTCCTTA	ref_3406_RC	25	44	25	19	46	19	46	15	54	26
ATTTTAACGTCATCGG	ref_3406_RC	15	30	21	21	22	7	24	10	23	5
GTCTAGGCGTACGATG	ref_3406_RC	20	31	18	13	34	15	30	18	19	13
TCGCGTCGTGCAACAT	ref_3406_RC	27	84	48	33	94	36	93	45	83	28
TACCATCTGATACTTC	ref_3406_RC	6	1	3	1	4	2	1	0	3	2
TACCGTCCCAGTGACA	ref_3406_RC	25	53	32	36	56	27	48	20	62	15
AACGTGTCACTCTCTG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CATGCCACAGCAATGG	ref_3406_RC	8	22	8	11	16	12	19	13	28	6
ATGCCGCTGGCATATC	ref_3406_RC	18	30	18	14	32	14	49	11	40	18
AGGACAATTTAATTGC	ref_3406_RC	15	25	21	21	22	17	31	11	29	9
ACGATAATTTTCGTCT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GCCGCCGTTGTCGGCT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GTCCGCAGGTGTATAA	ref_3406_RC	35	69	31	28	68	27	49	21	63	22
TAGGTTTTCTAGTGCG	ref_3406_RC	3	17	6	5	13	8	19	8	18	7
AGATACTTTATTTCTT	ref_3406_RC	23	33	17	21	25	19	42	19	31	16
ATCTAATACATTCGTT	ref_3406_RC	18	30	27	16	34	16	34	24	20	13
TATCCCATCCTTGGCG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TCTGGGTGTTCGAGCA	ref_3406_RC	8	15	12	24	29	7	18	8	19	16
TCTTCGATACTCCGGA	ref_3406_RC	42	109	77	58	130	52	110	51	109	31
TTATGAGATCAGTGAC	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CGGCTGGGATCCTGGG	ref_3406_RC	12	45	33	16	44	23	25	20	35	22
ATCGTTGATAGCGATC	ref_3406_RC	14	21	11	9	17	12	19	3	20	10
ATTTAGGTAGTGTCAG	ref_3406_RC	7	11	8	7	4	6	7	10	8	2
CGGATCTTGTAGGCCT	ref_3406_RC	7	18	9	1	5	6	5	3	14	2
TCGGGGGTCTAATTCC	ref_3406_RC	19	23	17	12	30	13	26	9	25	10
GCCGGTCCACAGTGTT	ref_3406_RC	54	114	71	58	140	47	137	49	132	54
AAGGCTCTTTCCGCGA	ref_3406_RC	12	26	28	17	22	13	32	10	38	9
TCGGGACAGACGTCGC	ref_3406_RC	27	18	25	17	36	32	38	11	39	14
TTTCTAGGGTTAAGGG	ref_3406_RC	68	130	78	74	126	62	131	63	158	58
TTTATTAGACCAATTG	ref_3406_RC	6	17	5	8	9	8	23	5	15	7
GGTTGGATTTTCGGAA	ref_3406_RC	26	22	33	21	41	18	48	13	46	17
GGTCTTTGACTTCTGG	ref_3406_RC	39	110	66	53	104	57	102	35	119	47
GATATTGATTTCTAGA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
ACAGTGTTGATTCCAT	ref_3406_RC	22	35	24	23	26	23	23	23	41	25
TTGCTTGCTAATTGAT	ref_3406_RC	45	67	40	32	56	44	71	31	68	25
GATCACCGTGCTCACA	ref_3406_RC	8	17	13	8	18	9	11	11	24	10
TGTCTGCGCATACTCT	ref_3406_RC	33	53	37	26	54	29	58	27	67	37
CACAGGCGGTCGCCAG	ref_3406_RC	17	40	29	25	46	14	41	31	39	30
GTTCATTATAGTCGAT	ref_3406_RC	48	78	62	34	99	41	80	55	96	40
CGGTCGTACTTCTGAG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
ATGTCATCTACATGCA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
ATTATGTGCGATATAC	ref_3406_RC	8	13	3	2	14	7	20	3	17	5
TGTCCTATGGATACCG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
AGAACCGCAAGCCTCA	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TGCGTTGGCTTCGACC	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
GCCGCGGTCTTGGTTG	ref_3406_RC	9	11	8	7	13	8	14	5	17	2
TCGTAACATCGACGGG	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
TCGTATTTTCTGCTCC	ref_3406_RC	9	26	24	3	14	10	24	8	33	6
TGCTGGCACTGTCATG	ref_3406_RC	19	31	27	12	32	8	31	12	35	7
TACCGACCTTTGCACG	ref_3406_RC	17	35	15	16	31	9	40	19	31	15
TTCAGCCGCTACCTTC	ref_3406_RC	1	4	0	2	0	0	4	1	4	2
CAAAATCGATTTATAT	ref_3406_RC	0	0	0	0	0	0	0	0	0	0
CTGCGCCACTTTAGCT	ref_3406_RC	10	14	8	10	14	2	9	4	18	6
GTTCCTGCTGCTTTAA	ref_3406_RC	41	95	43	28	61	36	69	34	93	30
GCTTCGTATCCGCTGA	ref_3406_RC	20	41	37	25	51	24	44	29	51	26
GCAACGGCGAGGGATC	ref_3406_RC	10	4	4	3	6	3	7	2	8	1
CTTAACCGGATCTTGT	ref_3406_RC	44	72	58	49	82	45	93	40	87	35
GATGGGTTTCGGTAGG	ref_3406_RC	8	27	15	11	34	13	34	14	22	13
GCATGCGCGGAGAATC	ref_3406_RC	2	7	0	0	1	0	5	3	2	2
ACGATTTATCTTACAG	ref_3406_RC	9	2	17	12	10	6	18	17	7	8
ATCCTAAGTCGGCAGG	ref_3406_RC	6	23	9	10	12	8	12	6	13	4
TTACTTTCACCGATTG	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
AATGGTACCGCGTATC	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
ACGCCTTAAGGACTTT	ref_4676_missing	15	25	11	7	12	14	17	16	19	14
TTTTTCCCTTTTTACC	ref_4676_missing	1	3	1	0	1	1	6	2	5	1
AGTGGGCCGGTATGAT	ref_4676_missing	20	40	30	10	31	29	48	20	43	12
TTGGGCTATTTCACTG	ref_4676_missing	7	6	3	2	7	3	12	2	3	1
GTACCACTGACTAACG	ref_4676_missing	11	15	12	16	23	12	18	8	13	11
GACTAGGCATGGCTTA	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
ATGTGAGTTTCTGGAA	ref_4676_missing	26	30	22	17	28	20	21	8	35	22
GGAAGTCTCTTTCCGG	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
ATCACCACCCTTCATT	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
TTCGAGTTTTGTTTTT	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
TGATCCACGACAGCTT	ref_4676_missing	11	16	15	12	17	6	17	11	13	8
TCTGGCAATCGTGACA	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
GTCAAAATCTAAGAGT	ref_4676_missing	8	9	2	6	14	4	9	8	7	7
CTGGCTGTTGGCAGGT	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
AGAGAGAGTTTCATAA	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
GGAGTTATTATTCGAG	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
TTGTTAGGTTTTGTCA	ref_4676_missing	36	46	62	49	49	38	70	34	73	36
TGCTTATTGTGAAAGC	ref_4676_missing	29	37	14	23	42	19	41	13	39	22
ATGGATTCTAGTTGAA	ref_4676_missing	56	57	63	38	63	38	68	48	72	34
CTTTGAATACAGAACT	ref_4676_missing	38	40	43	41	46	33	49	38	44	31
ATATTTGCCGGGTTGC	ref_4676_missing	39	59	57	45	51	34	67	32	104	39
ACAAAAAAAACATGCT	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
TTCGTACTTACAATCG	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
TGCCTGTTACGATCAA	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
TAATATCTCACTAGCG	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
ACACCTAGATTATTGC	ref_4676_missing	106	150	131	101	159	92	167	86	160	94
ACCACTTATAACCATG	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
AGCTCGAATCGTTGTC	ref_4676_missing	7	12	7	4	12	12	15	7	21	9
TTTCTCACGCTGACAT	ref_4676_missing	2	3	3	5	5	4	2	1	3	1
ACCGGCAATTGTAATC	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
CGTATGTGTCTCATAT	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
AATAGCTCATGCTCGA	ref_4676_missing	79	134	91	84	145	90	133	88	155	89
CGTATTGGCACAAATT	ref_4676_missing	8	15	12	8	21	8	19	10	22	7
TTGGCCCTACGCATCG	ref_4676_missing	14	25	16	20	18	19	25	12	19	7
CCTGCGTTCCGGCTCT	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
GCTTGCGCCGAGTGTC	ref_4676_missing	0	0	0	0	0	0	0	0	0	0
CACAAGGTTTTGACAC	ref_4676_missing	60	82	46	47	96	55	100	41	97	43
TTTTCGGTCTTCAAAT	ref_5940_new	52	51	60	51	48	43	59	39	59	40
AACTCTCATTGAATTT	ref_5940_new	2	2	2	1	6	4	7	8	5	1
AGATCTAGTGCTGCAT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
CGCCCCCCGTATCTAG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
CTACGCGCGGTCTTTT	ref_5940_new	24	26	40	32	31	19	27	13	41	14
AGCGCGCGTCCGGCTA	ref_5940_new	2	11	4	5	2	4	9	5	4	3
TGGGCTTGGTCGGTGC	ref_5940_new	37	39	42	49	46	25	67	26	49	32
CTTTCATGATATGGGT	ref_5940_new	10	11	12	9	18	10	15	13	12	7
TGTGGTCTACGTTCCA	ref_5940_new	45	41	37	24	47	26	46	39	45	24
GATCGTACTGTCTATC	ref_5940_new	0	0	0	0	0	0	0	0	0	0
ATATGCATTTCTGAGT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GTCTGGCAGTTGTGGA	ref_5940_new	3	6	8	9	8	1	9	3	9	1
CCGCAGTGAAACCGGA	ref_5940_new	18	13	21	14	19	10	17	6	11	8
GAATCGACCTTCAAAG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
AGCGCGTGACGGCTCC	ref_5940_new	136	162	156	96	182	138	163	108	150	108
GGATTTACTCCCGATG	ref_5940_new	1	6	5	2	2	3	7	2	10	3
TCCTGTTTCGCCTGTC	ref_5940_new	0	0	0	0	0	0	0	0	0	0
ATTTGTGTCAATGCGG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GCTACCCGTTTGTAGT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
AGCCGCAACGATTGTT	ref_5940_new	8	20	13	14	28	15	23	6	34	10
AGGATCTGTTCGGGTA	ref_5940_new	0	0	0	0	0	0	0	0	0	0
CCCTCTATCGGTGGCG	alt_5940_new	13	27	15	15	38	15	34	12	32	14
TTGGCGCCCTTTTATG	ref_5940_new	19	20	26	22	19	22	16	17	29	15
TTGTAGCGTTTCGCTG	ref_5940_new	19	16	25	13	16	13	40	13	21	14
TCAATCCTGGTACTCT	ref_5940_new	20	27	11	11	17	12	23	9	27	7
CACCAAATCTGGATAA	ref_5940_new	14	14	14	13	19	9	21	7	24	7
TTTTTGGTGAGGCTTA	ref_5940_new	11	18	12	12	21	11	14	8	10	3
CTATTCACTGAATTTT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
CTGTACTGCTAGTAAT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
AGCGACTGAGCGTTAT	ref_5940_new	77	103	88	102	110	77	105	59	102	77
AGTTTTACCTTTGCTT	ref_5940_new	10	26	26	18	23	17	29	18	24	18
TTTAAGGGGTCACGAG	ref_5940_new	45	67	55	35	72	40	64	31	54	35
CTCAATGTGTATTTAG	ref_5940_new	2	1	2	1	1	0	0	0	0	1
ATCGTAGGTTTTACAT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
TGCGGTACACATTCAC	ref_5940_new	4	19	4	4	23	6	23	3	9	5
GGGCAGATCCAATTGG	ref_5940_new	62	94	70	68	70	53	76	59	81	51
TGTTCACGACGAGTTT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GAGATTACGAAGTGGA	ref_5940_new	32	43	40	31	33	19	40	24	39	21
AGCGTTATAGTCGGGT	ref_5940_new	14	20	17	12	18	19	31	8	23	16
AAATCGGTTTGGTTGA	ref_5940_new	25	50	28	26	28	19	28	27	20	24
GCGCCATCCTCTTGTT	ref_5940_new	2	12	1	9	15	6	7	6	10	5
TGTAATCTCATCACCC	ref_5940_new	29	33	44	35	39	21	52	27	42	18
ATTTTAGAACTTGCAC	ref_5940_new	22	22	22	31	14	16	23	23	34	20
CACGGACACGCCGACC	ref_5940_new	7	8	11	7	13	5	21	19	18	8
ATTAGACTCTGTGATC	ref_5940_new	0	0	0	0	0	0	0	0	0	0
TAGCTTGGGGTCAGTA	alt_5940_new	15	38	22	15	26	31	27	17	25	12
CAGACATGGTCGAAGG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
TTAATGCCGTCATTTT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GTGTAAGGACCCGTCG	ref_5940_new	5	11	2	6	7	4	14	4	12	4
CCTCTGATGCCCCTGC	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GGCCTTGGATCTGTGC	ref_5940_new	10	17	7	6	11	9	10	8	11	4
CACACGCAGTACATGA	ref_5940_new	3	10	15	6	15	9	9	12	12	1
TGATAGATAGGTTCGC	ref_5940_new	74	101	98	71	117	51	122	87	105	88
TTCTTTCCTATGTCTA	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GGCCAAGTATGGCCGA	ref_5940_new	2	10	6	5	14	2	6	1	8	3
GCCCTATCTCGTTACC	ref_5940_new	1	4	0	1	3	3	6	2	8	4
CCAGATCTTTGTAGCT	ref_5940_new	41	63	67	59	65	37	65	48	62	46
GTCGCTTTTCCTGAAT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GTAGGAGCGCGGTTCT	ref_5940_new	12	8	13	16	7	17	7	11	11	14
GGATTCTTGTGTTTCC	ref_5940_new	81	91	111	104	97	89	110	65	124	94
ATCTTCCGTCATCGGA	ref_5940_new	0	0	0	0	0	0	0	0	0	0
TTAGTCTGCAGCAGCT	ref_5940_new	20	32	19	21	25	25	28	17	29	21
GTACGCTACACCCGTG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
CCGTGTACTCCAATGA	ref_5940_new	64	101	99	65	94	78	126	66	119	42
GCTGATTTCGCAAAAG	ref_5940_new	5	2	6	4	6	4	5	1	3	2
CCGGCGTTTTCGTCGA	ref_5940_new	0	0	0	0	0	0	0	0	0	0
TTTTGAGATGTCCTCT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GAAAATACTTTTTTGG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
TGGACTATTCAGTAGA	ref_5940_new	3	4	4	4	4	8	13	5	4	2
TTCTGCCTTGCGTTAC	ref_5940_new	10	17	13	8	11	9	7	6	12	8
AAAAGAAAGATATCGG	ref_5940_new	15	3	5	5	5	8	11	6	9	4
ACGACCGTCTTCAGTG	ref_5940_new	6	14	18	4	7	2	16	8	11	6
CATTTGATAAGTCTAT	ref_5940_new	15	27	20	10	36	6	24	13	32	14
ATTAATGTCCATTGGT	ref_5940_new	0	0	0	0	0	0	0	0	0	0
TTTGTGGGCAGGCTAT	ref_5940_new	9	13	9	9	13	7	7	6	14	8
GTGTCACCGCGGCGCC	ref_5940_new	11	30	14	7	36	7	35	7	31	6
ACGATAATATCTCTGG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
CCATTGACGCGCTGTA	ref_5940_new	6	1	7	15	11	7	15	9	12	8
TGATACTGGGTTTGTG	ref_5940_new	0	0	0	0	0	0	0	0	0	0
GGTAGCCTCTCATCGA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCATGTTCGGGAA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CTCATGAACCTAAGCG	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
TCATGAAGGTTTCGTC	alt_2283_upstream	0	4	6	0	0	1	3	3	4	0
CGACGGCCTGTCGTAT	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
ACGATCCATGTATCTT	alt_2283_upstream	263	274	334	286	269	276	268	276	270	235
GGGTGACTGGTTAAAC	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTCCACTCGGATT	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CCATCATATAATGCAA	alt_2283_upstream	80	78	88	60	66	60	70	59	60	66
CCCCGATCGGATCTAA	alt_2283_upstream	101	135	148	123	131	97	133	131	143	102
TTAAGCCCGACGAGAA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
TAAACGTTTTGGCGCA	alt_2283_upstream	30	20	22	21	34	24	23	17	36	28
ACGATGTCAGGACCGT	alt_2283_upstream	7	11	3	10	5	2	7	6	3	3
GCATCGAACTATATTC	alt_2283_upstream	5	5	5	2	4	2	4	6	4	1
GTGCTCACGATCTCAA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CCACACAGGGTAAGTG	alt_2283_upstream	49	72	70	58	81	38	74	52	57	38
AAGCTAGTGTACTCGC	alt_2283_upstream	21	20	12	8	13	6	9	9	12	4
TTCAAAAAGTATCGTC	alt_2283_upstream	6	20	6	6	26	5	12	3	19	10
CATTAACCGTAAGAAT	alt_2283_upstream	3	0	0	1	1	0	2	1	0	0
CTACATCCAGCGTTAG	alt_2283_upstream	2	6	6	5	10	4	4	5	7	5
TCAACATTTATATGGT	alt_2283_upstream	14	19	21	30	19	26	30	15	16	24
GCTTTATCCGAGGTGG	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTGGTCTACCCTC	alt_2283_upstream	113	151	114	85	128	91	115	86	173	93
TTAGCTAATCTTAGTA	alt_2283_upstream	127	152	130	97	140	99	145	105	160	120
GCGCGTTTTATCGTCA	alt_2283_upstream	13	9	20	6	13	11	10	7	6	6
AGGGCGGGGGTGCGCG	alt_2283_upstream	130	138	160	156	179	140	166	129	156	117
GTAATTTGACATTGGG	alt_2283_upstream	93	113	148	111	108	95	126	102	128	82
TGAGAGCTACTCCCCA	alt_2283_upstream	30	46	31	24	33	15	28	25	37	25
ATCTCCACACGCGACG	alt_2283_upstream	24	45	31	38	35	23	28	35	34	32
TGCTACCTTAGTACGG	alt_2283_upstream	86	118	104	91	138	82	137	80	128	75
TGCCGCGACATCGTCT	alt_2283_upstream	25	24	23	25	30	19	35	16	23	18
CACTGTCCTATTAATT	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
GGCCGGGGCATTTTTT	alt_2283_upstream	17	12	16	7	16	5	11	12	9	4
TGGGTCTATATGTGTT	alt_2283_upstream	51	59	37	37	51	41	48	42	52	35
GGGTAAGCTCTTCATC	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
GTTATCCTTCAGGGCG	alt_2283_upstream	22	18	20	19	24	12	20	21	20	6
GGGCCAGGCCCCACCA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAATGGTCCGTCT	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGTGGTTGAGACT	alt_2283_upstream	7	11	13	16	11	13	13	11	19	15
TCTGACATGCAATTCA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CATTGCATGAGTTTTA	alt_2283_upstream	132	212	150	125	168	149	176	161	190	106
GGTGTACACTAGATTC	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CCATACAGACTACGAA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTCCACTACCTGT	alt_2283_upstream	158	315	198	188	357	138	310	152	326	133
TGTGCACATGTAGGTT	alt_2283_upstream	186	264	254	229	298	213	295	214	332	200
ATGGTCTTTAACTTAC	alt_2283_upstream	40	34	39	34	46	28	61	42	63	36
GGCACACGATTTCAGC	alt_2283_upstream	7	7	5	4	5	2	8	5	3	6
GCCCTTGTACCACGGC	alt_2283_upstream	21	23	19	26	23	24	21	20	22	18
GCACCGGGCAGGAGCC	alt_2283_upstream	31	53	29	44	40	28	54	29	35	37
TCTACGATCGTGAGAC	alt_2283_upstream	54	49	50	52	55	43	48	49	68	27
TCCTCTGGATGGTAGA	alt_2283_upstream	11	19	16	17	16	11	17	6	17	20
AGTTCGCACAGCGCTA	alt_2283_upstream	10	17	8	12	15	5	7	10	24	11
TTGGTGGATCTATTCT	alt_2283_upstream	26	36	25	20	30	29	28	18	34	17
CCAGCTCCTCAAGTTG	alt_2283_upstream	90	189	124	126	202	113	167	112	190	101
AGGGAAACTACTGATA	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
AATATGCATGGGAAAC	alt_2283_upstream	22	32	33	37	39	25	29	28	43	21
GATTAATTCACAACGC	alt_2283_upstream	64	70	64	46	96	63	83	74	72	38
GCTTTCACGAATGTTT	alt_2283_upstream	14	9	13	12	14	18	15	15	12	10
TTACGCGAATCACTAG	alt_2283_upstream	3	11	3	1	6	8	5	2	4	5
TATGAGAGTCCTGTCT	alt_2283_upstream	79	74	67	49	82	82	86	48	91	53
TCTATTAGCTCTCAAC	alt_2283_upstream	16	34	34	28	20	20	36	23	35	18
GCGTCTTCTAGGTAGC	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
CTAACCCGCCCAAAAC	alt_2283_upstream	74	66	73	74	67	78	74	39	95	51
CGTTCTGTTAGGAACT	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
GAAACATATATCGCCT	alt_2283_upstream	4	12	7	8	7	8	11	12	11	9
TTGTTTGTTGTGTCGC	alt_2283_upstream	27	27	41	34	39	25	32	32	35	27
GAATAATCGGTCTCGG	alt_2283_upstream	14	10	16	6	16	3	13	10	18	6
CATTGGCGGATTTCAT	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTCACTATCGTCC	alt_2283_upstream	86	95	99	71	103	86	121	72	124	84
GCTGTGAGTGATATTA	alt_2283_upstream	28	47	43	20	55	36	36	29	49	19
CTTCCTGTCCCCATCC	alt_2283_upstream	46	58	58	45	51	37	49	38	57	38
ACCAGCCGGTTCGTTT	alt_2283_upstream	57	116	68	56	84	55	108	57	115	50
TAATTTTCACGGTGGC	alt_2283_upstream	16	17	16	11	14	19	14	11	17	9
CGAACGCTGTCCTGGG	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTCCCTATATTGA	alt_2283_upstream	67	79	54	51	107	43	108	45	113	61
TGTACCCAAGAACCGG	alt_2283_upstream	3	0	4	1	2	2	2	1	1	0
CATATACGCTGGCTCG	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCCGGTTTTATT	alt_2283_upstream	24	32	43	32	34	39	31	21	41	16
ACCTTGTATATCTCAT	alt_2283_upstream	67	76	89	83	101	63	104	70	105	65
CTCTGGTCAAGACTTT	alt_2283_upstream	39	49	37	32	43	20	54	25	43	35
CGCGAATGTCCGATTC	alt_2283_upstream	48	84	56	44	67	52	80	53	81	40
GCTTGACTTTAGGGGT	alt_2283_upstream	42	53	52	53	66	35	37	30	62	34
TTTCGCCCTGGCATAT	alt_2283_upstream	24	19	24	21	32	12	36	25	25	17
ATGGAGATACTTTGGG	alt_2283_upstream	9	6	3	1	0	0	2	7	8	5
TCGATCTACATCGGCA	alt_2283_upstream	12	17	14	12	7	11	14	17	11	6
CCATATACTGGTTTTA	alt_2283_upstream	39	133	52	43	135	33	125	38	157	35
TGTAAATCAGCCACCC	alt_2283_upstream	4	4	6	3	11	7	10	6	6	6
ATTCCGGGCCGTTCGT	alt_2283_upstream	21	32	28	21	50	33	52	30	43	17
ACCTGTAGTTTGTCTA	alt_2283_upstream	16	39	30	14	39	23	53	23	46	21
CTACCCGGTTTGGTCC	alt_2283_upstream	0	0	0	0	0	0	0	0	0	0
GATTCAGTGTGTATCG	alt_2283_upstream	25	24	32	23	32	29	30	24	37	22
ATATATGTATCGTAGA	alt_2283_upstream	14	16	10	1	12	11	8	14	5	12
TGTCGGGGGGAGCACT	alt_5823_new	4	11	10	5	2	4	4	3	8	1
TATATGTTTCCCATTC	alt_5823_new	15	19	13	13	26	20	18	11	14	10
GGCCCATTGAACTAGG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TGCCTATTCATATGCC	alt_5823_new	16	27	16	13	20	12	34	14	34	13
CGCATCGATAGTCCCG	alt_5823_new	86	150	126	94	154	99	206	63	181	71
TTTAGCATATATCATT	alt_5823_new	19	13	11	19	28	17	29	17	33	5
ACCCATGCGTCGGTTT	alt_5823_new	9	18	15	15	21	13	13	7	15	8
GTATCAGGCCTCATTT	alt_5823_new	30	22	21	7	29	18	17	19	35	11
TTTTTTCTTGTAGTCC	alt_5823_new	17	23	26	18	32	24	26	14	41	20
ATGTGTCAACCTGGGT	alt_5823_new	34	32	28	17	33	18	26	22	32	22
TCCTTAATCCTATGTG	alt_5823_new	20	27	15	14	27	6	20	10	24	15
GTCAGGCCTATTATTT	alt_5823_new	11	23	20	21	26	15	25	19	34	21
TACGGTTATTTCCGGC	alt_5823_new	4	10	8	2	9	2	7	2	10	1
ATTAGCGGGACGCAGC	alt_5823_new	20	27	21	16	32	15	31	16	28	17
AGGGAGGACCGAGCTA	alt_5823_new	13	40	25	29	34	24	28	16	41	19
TCTTAAAACACATGAT	alt_5823_new	5	16	11	14	16	12	18	10	20	11
GTCGTTGTGCCCAGTT	alt_5823_new	16	27	16	18	27	7	23	17	26	10
TATATTTTGTCAGTGT	alt_5823_new	0	0	0	0	0	0	0	0	0	0
GGTGTCGATTCGTTAT	alt_5823_new	6	16	11	15	22	5	13	11	22	5
CGCACAGCGGTAGAAG	alt_5823_new	22	27	25	13	35	20	39	12	40	17
TCAGTATTTTTTCACT	alt_5823_new	14	23	27	20	28	16	21	20	23	20
GAGGAAGTTGTGATTA	alt_5823_new	18	26	13	14	20	16	30	13	23	9
ATCGTCTACTAGATCA	alt_5823_new	17	26	30	19	24	19	36	11	30	12
ATGTATGCGGTCTAAA	alt_5823_new	4	5	8	2	9	0	2	5	9	1
AATTTATCACAGGCCC	alt_5823_new	12	31	25	24	30	31	23	15	28	20
TTTACCTGCAGTTAAT	alt_5823_new	11	24	11	7	23	13	16	7	23	10
GCAATGCGCCACTGAA	alt_5823_new	18	20	15	13	35	12	24	9	24	7
GCCAATAAAATATGGT	alt_5823_new	2	8	5	3	5	10	6	3	12	6
GGGGCACCTGTAACTA	alt_5823_new	9	11	8	4	9	1	15	2	13	5
TGGGTGTTCGGTAATC	alt_5823_new	7	15	15	8	20	6	27	13	10	11
TCGGCGGCCTTCGCCT	alt_5823_new	5	9	5	5	13	5	7	7	5	5
CGGAGAAGCACCGGCA	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TCGAGGGACATTTACC	alt_5823_new	0	0	0	0	0	0	0	0	0	0
CTAAGTGGTACGCACT	alt_5823_new	12	44	27	14	28	20	32	14	40	11
TAGCGCGACCTGTGAT	alt_5823_new	6	14	4	8	9	9	14	4	3	6
GGGGTCACTGTGGTGT	alt_5823_new	14	27	19	21	23	21	26	15	34	13
ATTCTTACGTAGCAAG	alt_5823_new	187	304	240	226	327	165	343	183	339	186
GCCCTGGGAGCGTTTG	alt_5823_new	8	18	10	8	6	4	11	5	10	6
TGCCGTCCCTGTTTTA	alt_5823_new	55	99	90	69	113	59	101	89	115	57
ATCGGATGGTTTTCCG	alt_5823_new	24	30	12	14	14	16	16	6	22	13
GTCTTGAAAAAAGCGA	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TACGTCTCGTCTTTGT	alt_5823_new	15	24	14	13	31	15	17	17	19	10
TTCATTCGCTTTAGTA	alt_5823_new	0	0	0	0	0	0	0	0	0	0
AGGTTCCTTTTGGGAG	alt_5823_new	7	14	11	9	13	8	19	8	13	10
GTTCCCCCGTTTAAGG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
GCTTTCTCTGTACCCG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TCCCTGCATTGTTTTG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TCCGGATAGGGACCAC	alt_5823_new	15	20	25	18	24	8	29	13	28	23
TCCGCTCGACGTCCTT	alt_5823_new	63	182	82	66	143	68	180	62	145	51
GTACTCGCTGAATCTA	alt_5823_new	15	35	25	21	38	16	36	18	27	12
TATCAGTATGCGATTC	alt_5823_new	13	7	14	7	20	8	9	10	16	9
CCGCCAGGTTTTGTTG	alt_5823_new	3	15	10	15	15	11	23	6	19	10
TTTTAATGACCCAATC	alt_5823_new	27	35	24	18	44	29	49	29	44	20
CTCTCGTTTACCAGGT	alt_5823_new	19	37	24	23	35	16	33	26	37	17
TGTGTCTACGCTGCTT	alt_5823_new	0	0	0	0	0	0	0	0	0	0
CACGTCGGGGTTGGTG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TTCTCCGAGGGATTCC	alt_5823_new	83	121	101	75	124	68	129	60	135	77
ATGTGATGTTAGTCTC	alt_5823_new	133	234	176	141	220	154	229	136	222	116
GGTATCGCGCTGTGCC	alt_5823_new	85	131	108	97	162	71	148	95	167	78
CGTATCTCTAATTGTC	alt_5823_new	17	17	18	21	26	17	25	14	12	9
ACGTAACCCGAGCCTG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
CGTTCGAACCTGGGTA	alt_5823_new	41	82	51	59	64	51	79	44	70	43
ATATGAATCCGGCTAT	alt_5823_new	41	51	53	42	62	44	72	44	57	43
GGGTTCCTCTAATTCT	alt_5823_new	18	23	23	14	17	15	6	13	24	10
GCGATGTGGCTCCTAT	alt_5823_new	13	26	15	21	16	19	22	17	26	6
TTTAGCTCGTAATTCG	alt_5823_new	19	27	17	15	23	23	42	11	41	13
AAATGAGGCATGATTC	alt_5823_new	0	0	0	0	0	0	0	0	0	0
TGCCGCCCGAGTTAAA	alt_5823_new	15	21	21	20	30	19	39	19	23	10
GGCTATCAATTCCATT	alt_5823_new	16	11	20	15	17	15	15	15	16	10
GATGTATCGCTCCTCA	alt_5823_new	0	0	0	0	0	0	0	0	0	0
ATTCGGCGATGCTAGT	alt_5823_new	10	20	10	14	19	12	19	14	18	11
CGTATTACGCATCAGA	alt_5823_new	17	12	18	13	16	16	18	15	28	20
GACGTATAGTTTGCGC	alt_5823_new	34	37	27	34	40	23	38	31	35	26
ACTCGTGCTCACTTAT	alt_5823_new	2	14	4	4	8	2	3	2	7	5
ACTCATATGTATGCCG	alt_5823_new	3	14	3	6	21	1	17	3	13	2
CTGTGGCGTGCTTCTC	alt_5823_new	0	0	0	0	0	0	0	0	0	0
CTCAGTACCTCTAGCC	alt_5823_new	0	0	0	0	0	0	0	0	0	0
CTGCGTGCCGGTACAG	alt_5823_new	2	5	5	1	11	3	6	6	2	5
CGTCACATTCGCTATA	alt_5823_new	29	22	27	22	31	16	33	12	27	15
CGCAATGAAAGAAATG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
GCGAATGTGCGCATAT	alt_5823_new	24	29	17	22	21	11	27	9	34	10
CACAATCGTGTTTGTA	alt_5823_new	1	3	7	2	1	3	7	5	3	0
TCTGGGTTCAGGAGGA	alt_5823_new	9	15	9	14	24	16	18	16	20	7
CATTCCTCATATGATC	alt_5823_new	0	0	0	0	0	0	0	0	0	0
ACGTTCGTAAACCATT	alt_5823_new	0	0	0	0	0	0	0	0	0	0
AAAGATCTAGTAAAGG	alt_5823_new	0	0	0	0	0	0	0	0	0	0
ATTGTTCCACTGGTTC	alt_5823_new	5	7	10	2	9	0	7	5	3	6
TAGTCAGTTTCCCCTA	alt_5823_new	104	181	126	116	151	87	209	98	163	92
GTCCTGATCGTGGGCT	alt_5823_new	0	0	0	0	0	0	0	0	0	0
AGTTCTGGGTTGTGCA	alt_5823_new	27	50	34	36	58	21	64	42	79	25
GCGGATTAATCATTGG	alt_5823_new	33	44	50	44	45	44	44	37	51	26
CGTAGCCCCTTCGGGT	alt_5823_new	41	68	50	45	61	42	64	44	67	50
AGACGTCTTGACCCCA	alt_5823_new	41	44	37	40	44	30	43	33	44	33
CAAGCCGTCAGTCTTG	alt_5823_new	51	138	80	48	150	40	171	39	165	44
TTGTTACGCGCAGTCT	alt_5823_new	0	0	0	0	0	0	0	0	0	0
CCGGTCATGGTAAAAC	alt_5823_new	0	7	1	1	12	1	11	0	7	0
TCCACTTGTAAGTTTG	ref_5403_reverse	20	31	24	20	25	17	43	14	35	8
CAGATCGATCGTGTGC	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTGGCTTCTTTGG	ref_5403_reverse	3	11	12	11	11	8	10	6	8	10
CGGCTGTTAGCTCTTG	ref_5403_reverse	48	81	53	53	75	51	81	41	119	43
TTTACTGCTTTATCAC	ref_5403_reverse	0	3	6	5	5	3	4	5	3	3
TATATTTAAGATTATG	ref_5403_reverse	7	11	19	11	17	17	15	7	19	8
GTGCAACCGGGTATGT	ref_5403_reverse	19	40	22	17	29	23	23	15	30	6
CTGTTTTGGTTGTCTC	ref_5403_reverse	8	2	5	2	1	4	6	7	7	3
TTACGGTTGCTTAATT	ref_5403_reverse	19	22	27	13	37	37	32	15	44	10
CAGCACATCAAAATCA	ref_5403_reverse	29	71	54	44	67	23	55	42	60	30
GCTGACCCCCACATTT	ref_5403_reverse	19	18	11	26	26	21	21	17	24	16
GGCCGCGGTCACAGAC	ref_5403_reverse	35	47	52	22	63	49	53	31	34	31
CTTTTCTCCCCACCGA	ref_5403_reverse	6	37	5	14	36	9	36	8	36	7
AGAAGCGGACTCCAGG	ref_5403_reverse	8	15	13	14	14	10	18	21	16	9
AATTTTTCTTGGCATC	ref_5403_reverse	226	338	256	237	319	208	354	194	362	202
ATGAGGTCGCCTCTCT	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGGATAGCAGTCT	ref_5403_reverse	34	49	24	30	63	19	47	24	54	37
TTACATATTAGAAACC	ref_5403_reverse	5	17	8	8	10	5	15	13	17	10
CTTCTGGTAAACCAAA	ref_5403_reverse	31	56	36	31	58	25	67	29	55	26
GTAGATAAACCGCGCC	ref_5403_reverse	17	25	14	16	30	24	33	17	36	10
TGTGTGCTTCACGATC	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTACGATTTTAAA	ref_5403_reverse	33	38	32	22	51	27	34	26	54	32
GGCTTGGAACTTCCGA	ref_5403_reverse	116	154	99	102	178	101	177	82	143	87
CGCTAAAGCTCATCTC	ref_5403_reverse	8	20	15	13	31	12	29	14	21	15
GGGCACTCTCTCCATA	ref_5403_reverse	108	193	153	118	200	99	214	100	195	106
TATTAATCCTTTGTAT	ref_5403_reverse	11	11	10	7	12	10	12	16	15	11
CTTTGCGCGTAGGTAA	ref_5403_reverse	11	24	17	15	25	21	28	21	32	14
TAAATGATCCCACTGC	ref_5403_reverse	7	18	13	6	20	3	11	8	12	13
TAATAGAATTCACTGG	ref_5403_reverse	64	73	71	68	98	65	83	53	85	43
GTTGGTTCTTGTAATG	ref_5403_reverse	46	56	32	32	45	35	58	34	48	32
GGTGGGTTGCCTTTGC	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTTCGATCCCTAC	ref_5403_reverse	38	71	54	33	67	53	81	38	87	37
TCTATGGCATTTGAAC	ref_5403_reverse	3	5	4	4	7	3	12	1	13	6
AACGTTCCGCATCGCG	ref_5403_reverse	4	8	14	11	10	8	7	7	9	11
TTCGTGTTGGCGTATT	ref_5403_reverse	19	41	20	15	26	19	23	16	28	10
TCTTTTATGCCATGTT	ref_5403_reverse	26	45	32	24	42	16	43	18	69	19
GAAAACAGTACGCTGT	ref_5403_reverse	3	3	7	3	5	2	5	4	4	3
TACTGAGTTCGACTCT	ref_5403_reverse	36	76	33	35	97	33	95	38	77	30
TGTACCAAACTGATCC	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
AATATTAGATTTCTTG	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGACGGGGACATA	ref_5403_reverse	19	43	26	23	43	18	56	16	38	9
TAGGTAATTCTCACCC	ref_5403_reverse	9	18	13	14	17	8	17	9	24	8
GCAAGTTCACCGCGGG	ref_5403_reverse	40	68	54	31	81	40	61	39	69	20
ATCTCTGCTCCCCCAA	ref_5403_reverse	17	39	22	29	42	21	47	18	48	29
TCCGGCGGGGTTTGGT	ref_5403_reverse	50	68	62	50	64	42	58	46	70	35
CTCACGTTTTTTGGCT	ref_5403_reverse	37	34	51	29	51	39	62	24	51	31
GTTCGTCCCCTTCCGT	ref_5403_reverse	4	7	6	4	7	4	5	6	16	11
TGAAAATATTGGACCT	ref_5403_reverse	33	80	59	46	87	46	74	44	74	38
GTTTGTCCTTTGTCAC	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCAGGCACTTTA	ref_5403_reverse	1	6	4	2	9	3	12	4	4	1
AACGTATGGCCTTCCA	ref_5403_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCTGTACAGGCGT	ref_5403_reverse	4	3	1	0	0	2	1	0	2	0
ACTCTGTGTGTCCAGT	alt_4642_RC	12	17	21	21	12	17	20	21	23	17
CCTTAGACGGAGTTTT	alt_4642_RC	28	27	25	28	25	25	22	24	26	19
TGTCCAACGTTAAGCT	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
CGCCTGAAGGTTTCGA	alt_4642_RC	36	30	57	56	44	47	34	50	42	32
TTTGGGTCGGACACGC	alt_4642_RC	20	14	12	17	14	14	7	8	12	6
AAGCATGCTTAAGCAA	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
GGAAGAATGTTTGTGT	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
ACAACGCCCACACGAT	alt_4642_RC	24	12	26	18	6	8	6	15	13	16
TCACTTAGCTAATGCC	alt_4642_RC	18	12	21	19	10	13	13	6	7	9
TCCACTTGTGTAAGCA	alt_4642_RC	16	12	23	19	15	23	25	11	15	16
TATCTCGGTCACGGAC	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
AACACGAAGCGACCCT	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
TAGCCGCATTCGGCCT	alt_4642_RC	84	87	101	89	65	79	87	85	86	90
GCCTAGTGGTAGTGTG	alt_4642_RC	34	41	35	26	41	28	48	28	35	28
GGATTATCGAGCTGTG	alt_4642_RC	42	57	56	47	41	37	45	53	33	37
AAGGCGCTAGATAACG	alt_4642_RC	46	42	39	43	34	44	37	25	43	33
ACGATACCCTGACAGA	alt_4642_RC	5	4	9	9	6	7	9	5	12	5
AGGATAATTCTGTGTC	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
TCGTAGCCACGGCAGT	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
TTTAGTGCATTACAGG	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
TACGTGTCGTATGGAT	alt_4642_RC	132	129	197	158	140	130	126	125	147	116
TTAACTCGTGTCTCAT	alt_4642_RC	84	67	95	81	70	75	48	69	65	69
GTGAATATAGACTCTA	alt_4642_RC	8	4	3	11	4	12	10	8	8	4
ACTTTCCTCGTGAAGT	alt_4642_RC	37	52	45	41	52	48	37	47	50	39
TGTGACAATTCGCACA	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
GCGCGTCGGATTTGCT	alt_4642_RC	16	11	19	18	10	17	8	18	9	25
GGGGCAACCTGTCTTT	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
GGGGCAACCTGATCTA	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
ATTCTCTGTTCATCGG	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
GAGACGGCCATCCGTT	alt_4642_RC	71	72	96	91	44	63	83	73	86	73
TTATTCGTTCCCTGGA	alt_4642_RC	75	49	103	93	66	80	66	65	56	61
GTCCGACTTAGCGTCC	alt_4642_RC	26	23	38	17	33	17	16	19	21	26
CGTACTGCCTATCTCG	alt_4642_RC	11	15	15	12	9	12	9	13	11	6
GGGTCTGGCCGTCATA	alt_4642_RC	1	12	17	10	2	16	9	9	9	11
TCCTGGCTCGGTATTG	alt_4642_RC	21	20	19	17	12	13	19	15	13	14
GTTTGAGTGATAATGG	alt_4642_RC	0	1	2	0	0	0	1	0	1	3
TGGTTAGTCTTGTCCT	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTTACATTAGTA	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
AGTATCGTGGCCTGTG	alt_4642_RC	100	66	115	103	92	102	77	106	69	88
GCCCGCGCATCCTCTG	alt_4642_RC	49	31	60	41	45	40	33	36	43	36
CATTTATTGGATATGG	alt_4642_RC	44	29	56	40	36	50	26	40	34	33
CTTTCTCTTCCCGGGT	alt_4642_RC	102	87	135	118	77	100	90	113	94	111
TGTCCAGATGTAGTCT	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
GAGTTAGGTCGGAATC	alt_4642_RC	48	63	77	77	42	69	57	81	74	60
AAACTCCTCGAACGCG	alt_4642_RC	38	40	41	35	50	37	50	32	43	45
GTTCGTACCATTTACT	alt_4642_RC	41	30	47	33	39	40	31	45	28	37
TATACGTGGAGGATTC	alt_4642_RC	0	0	0	0	0	0	0	0	0	0
CAGCACGGGAGGTTTC	alt_4642_RC	68	46	72	80	70	58	51	61	70	64
TGCTTCTAGCAGACCA	alt_4642_RC	23	24	29	27	20	20	34	32	23	29
CAAGGGCCTACTTATA	alt_4642_RC	73	62	81	97	47	84	70	60	59	77
GATTGGTATTTGGATT	alt_4642_RC	32	38	46	46	40	40	41	42	50	28
ATGGTGTCCTAAATTG	alt_4642_RC	0	1	0	0	2	0	1	2	0	0
CCGAGTGTGTAGTATC	alt_4642_RC	5	10	12	12	9	6	12	12	12	11
GAAATTCCGGTCAACA	alt_4642_RC	6	9	5	4	12	7	8	4	12	4
TCGTCTTTAAGATCTT	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CGATCGATGAAATATC	alt_4486_RC	38	27	23	28	40	23	52	17	39	19
AACGACGGGTACCTTG	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TGGGTATCCCATTTTG	alt_4486_RC	18	47	14	16	36	14	51	20	38	18
GGAGCGACTTTGGAAG	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TCGTACTCAGTACTAA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TAGTTGGTCCTGTATA	alt_4486_RC	1	3	1	1	0	1	2	0	3	0
ATGATCTACACCCAAA	alt_4486_RC	1	8	7	2	11	8	13	6	12	5
GCAGAGCTAGAGGCTA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGATGTTGTCTA	alt_4486_RC	8	8	5	3	4	7	10	2	5	3
GGAGCGTAAGGACATG	alt_4486_RC	27	46	40	24	65	23	58	26	57	34
CAGTTTGTCAAGGGCA	alt_4486_RC	55	117	63	60	155	47	162	68	153	64
ACATATCTACATACTG	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
AAATTTTCGCCGCGTG	alt_4486_RC	1	1	1	1	2	1	2	4	2	2
GCACCGTACGGCGTAT	alt_4486_RC	11	14	15	15	21	11	21	8	32	13
TTTTGCCTGAGCCTTA	alt_4486_RC	43	101	63	45	101	50	82	66	99	38
TGTAAACTCCACGTGT	alt_4486_RC	0	9	0	0	9	0	8	1	8	0
TGAGCCACATTTATAG	alt_4486_RC	1	6	1	2	17	2	3	1	14	4
ACGTTTGGGATGGTGA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
ATAGGGCTATAAGTCT	alt_4486_RC	16	26	18	20	32	20	47	19	35	16
TGTTCAATGCTACTAA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CTGGTATAGCGACACT	alt_4486_RC	1	8	3	5	8	6	12	6	9	7
ACATTTCGGTAATCTC	alt_4486_RC	11	17	7	7	6	9	12	12	14	9
AGAATAAACGCCCGCT	alt_4486_RC	42	72	48	40	82	35	71	38	82	36
CCTTAGCTTAGTATTT	alt_4486_RC	17	22	14	13	17	13	21	14	19	13
TTACTTTGGACGTTGA	alt_4486_RC	9	19	9	15	23	14	15	7	27	8
CTCATGCGCCCGGTCC	alt_4486_RC	20	54	29	19	57	16	71	23	83	25
GACTCCGTATGTCTAT	alt_4486_RC	2	3	10	5	8	2	7	1	5	1
ACCTGTCTGGGGCCTG	alt_4486_RC	27	52	28	12	53	21	58	23	43	21
AGTCTTGTCGGCCAGG	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
ATTTGGTACTATGACC	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TGAAGTTCTAGAACAG	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TCGTGCTCCACGTTTG	alt_4486_RC	31	91	35	34	79	30	88	24	86	27
CATCAAACGTAGCTCC	alt_4486_RC	26	79	36	44	89	27	83	31	88	31
AGGTATTTTCAGTCAT	alt_4486_RC	15	44	26	23	41	23	37	18	55	22
GTTGGAGAATCTAGCA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CGTAACAGGCCCAAAT	alt_4486_RC	27	53	40	50	54	45	68	26	75	26
CATGAGGTTTTTCTGT	alt_4486_RC	35	40	32	25	39	18	38	43	45	28
TGTTTAGTTCGCCCTG	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
GTCTCGTCTTCACCTT	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TATACTGATATTACAT	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CTTAGACATTGGTCTC	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TGACTGCTACTTTCCT	alt_4486_RC	34	107	58	56	111	41	117	36	126	36
TAAGCGGTAGATACCA	alt_4486_RC	59	96	61	36	84	52	113	35	110	45
TGGGTCCGTGGTCGAT	alt_4486_RC	16	21	17	12	30	13	25	16	26	16
TGCATTATGGTGCGTT	alt_4486_RC	13	16	8	7	35	7	22	18	31	20
TTTAGGGGTTCTGCGG	alt_4486_RC	17	22	13	10	22	9	26	10	20	8
ATTTGACTACGAACCA	alt_4486_RC	25	30	30	20	48	26	49	23	52	16
GTCATCAGTGTTTTCG	alt_4486_RC	8	38	14	23	34	21	43	25	29	14
GGCTGAATTGAGTCGA	alt_4486_RC	144	348	198	179	284	154	275	136	325	133
TGGCATTCCAATTCTG	alt_4486_RC	9	14	8	2	19	7	15	8	16	6
TATAACATTGTCCAGT	alt_4486_RC	3	22	22	5	18	9	24	16	21	8
TCCCGCTACTGCTACC	alt_4486_RC	25	42	45	28	52	37	67	40	64	25
TATGGCGTAATCTGGT	alt_4486_RC	14	30	28	19	39	18	36	21	41	23
TTTACACTCCGAACGT	alt_4486_RC	0	25	3	2	21	5	23	2	25	2
CAGGCCACGGTCAAAC	alt_4486_RC	49	171	72	55	169	43	178	52	164	58
ACCGGTCGAACCATCA	alt_4486_RC	0	17	1	3	14	2	27	2	22	4
TTTTCCTTCGCACGTA	alt_4486_RC	48	70	53	50	62	41	88	39	73	46
GTCCACTAACTTACGG	alt_4486_RC	112	160	107	91	167	88	173	67	190	77
GCACCGCTCGGATTTT	alt_4486_RC	18	49	29	21	45	24	60	19	60	20
AATTCTTTAGGCTGCA	alt_4486_RC	2	1	1	0	0	1	0	1	0	0
CTGTCTTTCATCTTTG	alt_4486_RC	19	28	19	15	41	14	31	15	33	16
GCTGATGGTTGTAGAC	alt_4486_RC	8	14	10	9	14	8	14	1	11	3
CGTCTTTACCTGGCTC	alt_4486_RC	7	13	5	2	9	10	18	1	19	6
CTCAATGAACATTCGC	alt_4486_RC	12	24	10	15	22	20	48	10	37	11
TAAATAACTAATGTCT	alt_4486_RC	34	62	35	22	52	45	76	32	76	26
CTTCCACCGATTTCTG	alt_4486_RC	5	8	3	2	9	8	15	2	10	3
CACAACATATTGACTC	alt_4486_RC	11	37	21	17	29	18	30	22	41	19
ACAGGCTTCCCGTTTA	alt_4486_RC	17	49	30	27	57	22	44	22	60	14
CTGGGCTAAAGAAGGA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TCTAGAGCGCAGCCTA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
ATGGAGATATGCTGAC	alt_4486_RC	40	80	38	41	65	40	94	28	87	39
GAAACATCGTTCGTAC	alt_4486_RC	5	13	10	7	18	8	22	12	24	6
AGATGCCCTGAGTTAA	alt_4486_RC	28	78	31	25	64	30	62	29	63	34
TGCCTCGGTTAGCCGT	alt_4486_RC	8	12	9	15	20	6	23	5	25	6
GGCTCTCTTTTCCGGA	alt_4486_RC	36	41	59	35	48	33	56	30	53	31
CCAAGTACTCATCCAC	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CGGGTCTCCGTCTGAA	alt_4486_RC	55	98	69	56	108	72	107	47	106	37
TTGGAGTGTTAATGCA	alt_4486_RC	3	8	2	1	7	2	4	2	8	0
TTATCGGTCTCTGATG	alt_4486_RC	35	78	38	40	99	34	82	29	81	37
TGGAATTCTAAGTTGC	alt_4486_RC	34	69	35	32	58	26	50	40	72	37
CGCGGAATGACTCTTC	alt_4486_RC	20	36	21	18	38	14	46	17	27	21
GTCGCGTAATTGGGAT	alt_4486_RC	60	106	43	55	114	46	112	47	124	27
ATCTATGCGTACAAGT	alt_4486_RC	33	67	27	35	51	32	75	29	50	22
ACTACTCCACCCAGTG	alt_4486_RC	20	50	25	28	64	20	56	18	65	23
TCGGAGCGTTCGTAAA	alt_4486_RC	12	9	6	6	16	7	17	5	13	6
GGCTTCAACCCTTCTA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
ATCCTACCAAGGCCGC	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
GGTTAAGCTACGCGGA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
AGCGTTGGCCCTTAAC	alt_4486_RC	23	44	14	23	45	20	28	12	34	20
TCAGCCTTGCTATACA	alt_4486_RC	6	3	1	1	4	1	1	0	11	4
TACACCCCAGTTGCTC	alt_4486_RC	4	11	2	2	20	4	13	3	14	2
TGCAGGACTGTACCCA	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CCTCGGTGTAACATTT	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
ATGTTTTTCACAGACT	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
GTGCTGGCTCCCTTTT	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
GGATTTTACAAACCAA	alt_4486_RC	11	9	16	7	20	5	23	7	24	8
GCGGTTTATCGATCTC	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TTAGTAGAAGTTCATC	alt_4486_RC	7	16	14	10	23	7	19	6	11	8
AATCGCGCAAAGTCTG	alt_4486_RC	12	13	14	13	23	4	15	11	16	7
GGATCTAGGCATCGTC	alt_4486_RC	48	82	44	37	84	42	93	52	86	47
CTCAGTGCAACAAATG	alt_4486_RC	7	7	2	11	8	6	12	5	17	4
GATGATACGCTAGATG	alt_4486_RC	5	2	5	2	3	1	5	1	4	2
TTCCTTATAGTGCCGA	alt_4486_RC	9	31	10	21	23	11	32	13	29	10
TGCTTTTATACGTCTC	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
TCGTTTGCCGGTACAA	alt_4486_RC	5	8	9	8	10	7	9	3	2	4
CACCTACATCTTGCGG	alt_4486_RC	54	77	55	41	112	45	91	45	93	42
CGTGTAATTGGAGAGG	alt_4486_RC	175	393	246	217	438	216	466	188	448	167
GCGCAGTCTAGAACAG	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
AGGAATTCTAAGTTGC	alt_4486_RC	0	0	0	0	0	0	0	0	0	0
CTCCTTAACTAATCGT	alt_4486_RC	4	23	11	8	11	10	14	3	30	4
TCTTCTATCGGGTGCT	alt_4486_RC	12	15	7	8	11	6	24	9	11	13
GGGTGAACTTTTCCTC	alt_4486_RC	38	92	38	40	57	44	85	26	66	42
CTTTCGTGGGCCATTT	alt_4486_RC	23	49	37	22	44	27	47	31	55	15
TCACTGACACACCCGT	alt_4486_RC	2	7	2	2	10	1	5	1	5	1
TCATAGTACACTTTGT	alt_4486_RC	17	37	19	23	36	14	45	20	55	18
CAAGAGACCGCCTATG	alt_4486_RC	5	14	9	8	7	4	9	5	4	3
CGAAACTACCGGGATA	ref_6018_new	5	10	3	2	4	1	3	3	5	2
GGGCTTGTGTTTATCC	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TTACTTATTTTATCCT	ref_6018_new	10	5	10	13	6	5	9	8	13	3
TGTTTTTGCCTATATC	ref_6018_new	0	0	0	0	0	0	0	0	0	0
GAGAGTGTCTTCGCGC	ref_6018_new	5	6	6	3	5	3	4	3	4	1
GTGGGTCGGTTTGACG	ref_6018_new	3	4	3	3	3	5	4	0	1	1
AGCCCACAGAACGGAG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TAACGAGGGGGATGTG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
CTGATCTCAAAACTAT	ref_6018_new	33	44	30	25	52	29	49	25	36	33
GTAGGTTTACCTTACC	ref_6018_new	3	29	17	8	12	5	19	6	26	7
CCCCTCGAGCGTATTA	ref_6018_new	4	10	12	9	13	10	8	7	11	5
GGAAATCTTACGCTTC	ref_6018_new	6	3	3	1	6	2	2	6	4	2
CGCATTGTGAGGTACC	ref_6018_new	0	0	0	0	0	0	0	0	0	0
CCTTTGTTTACGTTCG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
GTGATCTTCATTAGAC	ref_6018_new	9	20	15	13	20	10	15	5	15	6
TAGATATACCTCAGGG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TGACTTAGCCTTTGTT	ref_6018_new	20	14	40	20	23	30	29	22	33	19
GCGGTTTAGGACTCGC	ref_6018_new	18	15	19	9	25	17	17	12	25	10
CTCGCCTTCAGTGGGT	ref_6018_new	0	0	0	0	0	0	0	0	0	0
CTTTCCTTTAGGGCCT	ref_6018_new	1	4	6	2	2	4	4	4	5	5
GGCGGATAATGGTCGT	ref_6018_new	48	53	65	53	70	59	73	40	66	45
TTCTTTGTTAGAGGGG	ref_6018_new	10	8	11	5	7	4	7	6	4	4
CGGTACAACTGCGGCA	ref_6018_new	6	20	4	8	17	4	23	4	11	4
CCCTGCAGTGATTGGT	ref_6018_new	0	0	0	0	0	0	0	0	0	0
CTCCCATGACTATTTT	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TCGGCTCCTGTACGGA	ref_6018_new	0	0	0	0	0	0	0	0	0	0
CTGGATAATTCACCCA	ref_6018_new	14	12	17	11	24	6	26	13	19	12
TGCCGTCGGCCTAAGC	ref_6018_new	4	9	7	3	1	0	1	2	7	2
TGTCCTGCCTATTTAC	ref_6018_new	0	0	0	0	0	0	0	0	0	0
AGCTGCCGGCTATGTG	ref_6018_new	21	25	20	19	17	17	21	19	26	39
TAGCAAAACGAGCTTC	ref_6018_new	13	10	10	11	11	13	10	12	12	6
TGAGTGTCCGGTACCA	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TGTAGAGACTATGGAT	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TTCTCATCCCAGTTGA	ref_6018_new	83	85	60	50	74	62	60	59	74	39
TCATCAATTCCGTACT	ref_6018_new	16	26	26	27	23	16	34	24	26	12
CAGAGATGGTCGAAGC	ref_6018_new	0	0	1	8	0	2	0	1	2	2
CAGCTTAATGCCGGGG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
AAGTACGTTGATATGA	ref_6018_new	7	18	7	9	11	3	10	5	13	5
GTACACTTGTCATTTT	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TCTTCTCTCGAGGTGC	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TGTGTATTTAAGCTTT	ref_6018_new	51	49	43	37	38	45	69	40	65	45
ATTCATTGTCTGCGTC	ref_6018_new	28	31	41	19	30	19	41	24	27	27
CTTGATATTAATGCGC	ref_6018_new	6	4	10	6	11	4	12	9	5	2
TGTTTGTTTAAGTTTT	ref_6018_new	13	32	17	14	30	14	30	16	33	17
CAACCGGTGGACCCAT	ref_6018_new	11	21	6	6	9	10	18	13	18	8
CCTCTCTTGGATGATG	ref_6018_new	3	1	4	8	6	1	4	1	4	3
CGTATTATTTAGTGGA	ref_6018_new	16	21	20	9	21	7	17	6	25	7
CGTTCATCGTCCAGCC	ref_6018_new	5	11	10	3	18	10	21	12	22	6
CTGAATTCGCATAGTC	ref_6018_new	1	0	3	3	7	1	4	0	3	2
TGGTTGATGTCGCAAC	ref_6018_new	19	44	25	24	22	13	31	14	34	14
GTATGAGTTTCGTAAC	ref_6018_new	15	12	9	17	18	10	21	8	23	12
CTTGTTGAGCTCTTCG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
ATCGTTTATTAACTTG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TAGGTTTACTATCGGC	ref_6018_new	6	15	9	6	14	4	24	3	20	5
CGGGTTCACCGCTTGC	ref_6018_new	0	0	0	0	0	0	0	0	0	0
CCCCTATAAATTGGTC	ref_6018_new	1	28	4	0	27	0	25	3	26	0
TTCTTTTTAACTGTTT	ref_6018_new	0	0	0	0	0	0	0	0	0	0
AAATCGTCATCTGTCC	ref_6018_new	3	7	3	2	3	6	8	6	9	2
TCGGTTCATTTTTCAC	ref_6018_new	17	32	30	22	36	25	37	19	22	24
CGGGCCTACGTGGAAT	ref_6018_new	137	169	158	130	178	126	154	106	202	133
CTACTTCTCCTCCCGG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
TCGACTAAATTGCGAC	ref_6018_new	17	33	33	23	46	29	39	28	50	26
TCCGACGCACATGTTA	ref_6018_new	26	60	28	37	57	20	56	28	49	26
GTAACCCGATTTTAGT	ref_6018_new	8	10	13	9	11	9	7	8	10	4
TAGGTCTTCTTACCTT	ref_6018_new	2	22	4	4	26	3	20	3	29	1
CGGCCGGCTTATCACG	ref_6018_new	0	0	0	0	0	0	0	0	0	0
GACTAGAGGTTATCTT	ref_6018_new	0	0	0	0	0	0	0	0	0	0
CACTGATCGGATTCTT	ref_6018_new	10	17	13	12	18	12	28	14	27	10
GTATGCTGGCCTCAGA	ref_6018_new	12	20	22	15	19	19	17	9	26	17
CTTTATATATGTTCAA	alt_4372_reverse	1	3	1	4	3	1	0	2	1	0
CACCGTTAGTTTTCGA	alt_4372_reverse	29	70	27	25	29	21	74	23	47	21
CACACTATTTCAGTTA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTAGTCCGGCATA	alt_4372_reverse	11	23	18	11	32	21	36	16	37	9
GTTGGTGGTTAGAGTT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTAACCGGTCCAG	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GCCTACTTGACTAGGA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTACGTCGGCTTT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GCGGAGGGAAACGGGC	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCCATCATGAATT	alt_4372_reverse	5	20	5	2	15	7	8	5	10	4
ACTATATCGGGTCTCC	alt_4372_reverse	14	25	12	11	24	7	36	9	29	6
AGTGTAGGCCAGCGGA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
ATATTTCTTGGAATGG	alt_4372_reverse	34	41	55	30	53	39	44	31	50	31
AGCCTTCATTTTATTT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
CGTGCGCTTATGTCCA	alt_4372_reverse	48	135	51	67	74	65	112	65	108	55
CACATACTCACTCAAA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTCTCGGCAGCCA	alt_4372_reverse	31	56	35	27	67	37	47	23	74	35
GTCCCCTAAACTACGT	alt_4372_reverse	67	173	67	79	156	66	172	70	167	75
AGGCCAATTTCGCGTG	alt_4372_reverse	6	26	6	7	25	10	22	11	14	10
AGTGCATCGATTATTA	alt_4372_reverse	7	20	21	15	14	16	14	9	14	8
CAATGGTGCAGTGCAA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GTATCCTTGCCAGACT	alt_4372_reverse	4	5	5	3	8	8	6	6	6	6
GAAGCCCTGTCTCTAG	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
CTTATAAACGACCAGG	alt_4372_reverse	42	67	46	35	70	36	85	51	76	40
ATAACCTTGTTGTATT	alt_4372_reverse	25	25	18	17	23	6	27	17	22	18
AAATCCTTTACCCCCC	alt_4372_reverse	5	47	15	9	48	11	46	8	44	7
GAGTGGAGGATTCAGA	alt_4372_reverse	17	30	16	14	11	9	29	7	22	18
GCGGCCAGTTTGCATT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCTCCCTAAGAAG	alt_4372_reverse	38	88	38	40	71	32	67	30	83	40
GTGACGCAATACTACA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TCGTACCTTACATTGA	alt_4372_reverse	34	64	47	41	89	34	79	37	63	44
ATTATTTCGTGCGTGC	alt_4372_reverse	3	9	2	4	7	1	4	0	9	1
GAAATTTCTAAGCGGC	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTATACCGTACATCTC	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GCCATTTAACAGTTCC	alt_4372_reverse	17	31	18	25	46	25	35	25	33	22
ACTACTCCATAAAAAT	alt_4372_reverse	16	20	18	10	21	7	18	11	25	15
CGTGCTAACTGTCCTA	alt_4372_reverse	57	72	49	51	84	31	77	43	93	44
ATAACAGTACCCCTTT	alt_4372_reverse	9	19	7	9	13	7	12	4	20	3
AATAAACTTTTCAGCA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
AGTACCGGGTCCTGTA	alt_4372_reverse	30	62	47	33	66	30	73	26	51	38
CGTGTACCGCGTAAGA	alt_4372_reverse	7	18	11	14	27	10	12	5	19	8
TCTTAGATTCCAATTA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
CGGGGATGCGGGATGC	alt_4372_reverse	27	21	35	26	15	42	16	32	19	27
ATCGGAGATCCTAACG	alt_4372_reverse	4	1	0	0	1	0	5	2	0	3
GTTTACACTTCTATCT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCATCAGTCACCT	alt_4372_reverse	28	52	46	37	66	38	72	27	71	41
TTTGCTAATACTGACT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
CCTATCTTTACGCTCT	alt_4372_reverse	10	12	17	7	18	10	32	14	24	12
TCCTGTTCGGCGAGGT	alt_4372_reverse	8	23	9	14	10	8	26	6	13	8
TAGAATGCCAACGGAA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
ATCATTATTTACGTCA	alt_4372_reverse	16	16	15	15	19	18	22	14	20	12
TTCCCATAGGCTCATA	alt_4372_reverse	5	27	16	13	29	4	24	9	18	14
GGAAATCAATCCTTTA	alt_4372_reverse	35	71	53	25	55	39	83	30	79	32
TTCAATTTCCTCTCTT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTTTTCCAGAATC	alt_4372_reverse	0	0	1	1	0	2	0	0	1	0
GTTGTTTCTCGATGGC	alt_4372_reverse	21	37	33	24	41	22	51	33	59	23
GGTTTGAGGGTTCGTG	alt_4372_reverse	173	301	207	159	309	184	321	166	348	126
AGTTTGTTCCAATGGG	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
ACACTGTCTGTTTGTT	alt_4372_reverse	44	94	52	47	74	54	83	40	70	52
TTTTGAACCGAACGAA	alt_4372_reverse	38	64	57	45	89	51	87	24	84	38
TCAGTTTATTCATGTC	alt_4372_reverse	6	22	5	17	12	8	14	12	21	9
GTGTTATATAGCGTAT	alt_4372_reverse	6	15	10	17	27	12	22	9	22	4
GTGGTCATGCCGCCCT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
CCTGAGTGCATGGAGA	alt_4372_reverse	14	22	20	10	23	8	23	7	25	9
TTTAGTTGGGTAAGAC	alt_4372_reverse	32	72	24	32	50	23	55	17	68	31
CCCGTTGGGTGCATAT	alt_4372_reverse	23	37	34	28	35	23	45	19	37	13
CTCGTATGATATACAA	alt_4372_reverse	8	16	12	21	28	11	14	10	21	12
CAAAAAGTCTGACTAC	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTGACTGCCGACATTT	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGCACGTTAATCA	alt_4372_reverse	16	22	18	8	26	11	25	11	25	12
CCATAGTCCGATTATT	alt_4372_reverse	17	37	23	25	44	14	45	23	40	11
TGTATAACAGCCAACG	alt_4372_reverse	7	6	3	3	13	3	4	9	3	2
TCAGATGCAAGCGCCG	alt_4372_reverse	29	60	44	28	52	14	56	18	49	41
CAAACGCTAATTTACG	alt_4372_reverse	10	24	21	11	16	11	24	13	23	12
CCTTTCAGCATACCAT	alt_4372_reverse	18	21	14	7	22	9	25	14	27	15
TTACCGGATTATCTTA	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TCGCACTGTTGTCGTT	alt_4372_reverse	1	3	1	5	2	0	5	1	2	1
TCGTCACTAAGAATGT	alt_4372_reverse	6	11	7	9	12	5	8	3	9	4
CTAAAGACGTGATGCA	alt_4372_reverse	83	161	84	76	155	90	167	96	140	67
AAGCTCAGATCCTATG	alt_4372_reverse	78	111	108	75	114	66	95	81	119	72
AAATTAACTGCACCCC	alt_4372_reverse	15	29	15	13	25	22	42	12	25	19
CTATGATGACGCCATA	alt_4372_reverse	0	0	0	2	1	1	1	0	0	1
TTCCCTCATCATGGAT	alt_4372_reverse	17	25	9	10	32	17	27	6	27	17
ATACCGGCTAGCTACT	alt_4372_reverse	15	19	15	10	24	10	17	13	13	9
TGTAATCTACTGAAGC	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
TGAAGATGCCACCTAG	alt_4372_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTTACTTGTATAA	alt_4372_reverse	0	1	0	0	1	0	0	2	0	0
ACTCCTAATTCGTCGG	alt_4372_reverse	1	16	11	4	17	8	8	7	13	7
TTCGGCAACTCCAAGT	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
GATATACATGGCATGG	ref_5032_RC	15	22	19	24	34	25	23	16	24	12
TTAGTCTGGCGGTTTC	ref_5032_RC	3	2	3	10	0	1	1	3	1	1
TTAGGTCTGTATGAGT	ref_5032_RC	2	0	0	1	1	2	2	3	1	0
AAAGCGTGACGTCCCC	ref_5032_RC	2	1	2	4	6	4	6	2	1	3
GCGTACCGGGCACCGG	ref_5032_RC	17	21	20	17	20	16	23	17	17	13
TACGTTTTTACATCGT	ref_5032_RC	49	60	39	45	62	49	49	42	65	38
GATCGGATCGGCTGTG	ref_5032_RC	6	15	5	10	6	7	5	4	15	2
CGGGGGCTGCGGTGAC	ref_5032_RC	82	127	105	83	130	90	119	75	132	75
TTGTCACGTATCCGAT	ref_5032_RC	85	120	119	88	110	80	157	61	113	92
TCAGTATCTAGCCTTA	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTTCCCCCTACG	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
AATTGTATTTCTTTCT	ref_5032_RC	64	99	64	65	74	57	102	69	91	53
ATTTTGCTTTAGAAAC	ref_5032_RC	158	201	181	159	195	157	220	137	239	139
TTCCATGGTCACCCCG	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
ACATTCGCACGGTCCG	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
AGGCCCTTAAAACTTC	ref_5032_RC	28	22	34	19	34	28	35	24	38	25
CTTAGGTTACCGGAGA	ref_5032_RC	15	7	12	7	19	17	10	6	19	21
CAGTCAGACGGTCTGA	ref_5032_RC	21	52	32	32	67	19	50	24	45	20
ACCGGCTGTGGTATTG	ref_5032_RC	60	85	71	70	79	53	82	50	90	43
ACCAAGTATCGGGATA	ref_5032_RC	18	41	32	30	30	22	34	18	36	11
AGATTCGTAAGTTGCC	ref_5032_RC	24	26	29	34	28	27	33	35	28	19
TGCTGGATGAAAGTCA	ref_5032_RC	13	14	11	10	9	7	12	14	17	14
ATTTTGTTACTGGGCG	ref_5032_RC	4	12	11	9	22	9	7	7	12	6
TAAGTTGTGTTAAATT	ref_5032_RC	60	75	72	57	71	64	94	46	116	67
CGGACATTTATTGTAA	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
TAGTGGCATCTAGATG	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
CATACTCACGTTCGCT	ref_5032_RC	6	18	9	6	16	7	14	3	17	5
TCTCTCCACTTTTATA	ref_5032_RC	288	364	326	258	428	259	409	264	410	211
CTCACTCTGTATTCGG	ref_5032_RC	9	13	10	4	25	12	14	9	21	4
CAATATGCACGCAATG	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
CGTTTTGGAACGTAGG	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
GTGAAGGGGCTCATCT	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
GGGGGTCAGGTTGCCT	ref_5032_RC	21	33	33	29	26	37	34	20	42	23
GGGCTTCAGCTAGACG	ref_5032_RC	30	26	39	35	37	29	34	19	47	28
TTTGTAGTCCTGGCAC	ref_5032_RC	2	0	0	0	2	1	2	0	3	1
TCTTTTTTCATATACC	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
TAGTTGTTCCCCATTC	ref_5032_RC	55	67	60	46	69	37	80	39	73	38
ACTCCTCTACTTTAAT	ref_5032_RC	4	44	8	7	40	6	36	9	39	13
CTACCCCTGTCGCCAT	ref_5032_RC	9	14	17	8	10	6	13	7	11	10
TTCGCAAGTTTGTATC	ref_5032_RC	2	5	5	2	3	2	8	2	4	1
TGATGAAGAGTAATAA	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
GTTCTATCCTAGACGA	ref_5032_RC	111	185	118	105	175	100	195	104	146	121
CACATATCTGGCTGCT	ref_5032_RC	17	27	17	12	40	21	24	16	26	16
GCTTCCTATCTATAGG	ref_5032_RC	7	10	5	3	10	5	4	3	13	3
CAAACTCCGGTTTAAT	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
TAATTAACATTCACTT	ref_5032_RC	23	13	25	15	14	10	19	11	18	11
CAGAATTCGATGAGGT	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGTACCCTCAGA	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
TGCCCTGGGCAGTTCA	ref_5032_RC	16	19	20	15	29	19	15	20	18	13
AGCTGCCCGTGGACCA	ref_5032_RC	30	34	28	25	33	28	41	23	35	30
GACATGCGTTGTTCAA	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
ATAAGGGTAATGTACC	ref_5032_RC	14	15	8	10	8	15	11	5	13	6
ATAGCTGGGTATCTCC	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
CGCTGATGTCATATTG	ref_5032_RC	0	0	0	0	0	0	0	0	0	0
CACCGGTTAACATCTT	ref_5032_RC	7	12	12	9	19	7	15	9	12	4
TCATGTTGTCTGACCG	alt_5032_RC	0	0	0	0	1	1	0	0	0	0
CACACTGCGAGCCTAC	ref_5809_new	0	0	0	0	0	0	0	0	0	0
CCCGAGCTCTGCTAGT	ref_5809_new	0	0	0	0	0	0	0	0	0	0
ACACCGGCCTTAATTC	ref_5809_new	87	168	131	120	176	111	156	80	156	78
TCCTCCCACGTGTTGT	ref_5809_new	41	44	52	27	48	27	43	30	45	22
TTGCTTCCTCCGGATC	ref_5809_new	39	57	44	49	46	46	62	29	66	52
CTTGGATGGCTTCTAA	ref_5809_new	6	5	8	8	8	5	5	8	2	3
ATGGCGCACAATCTCA	ref_5809_new	15	12	13	17	8	9	10	14	16	13
CACACTCCAGATTTCC	ref_5809_new	0	0	0	0	0	0	0	0	0	0
GATCGGTATAATAGTC	ref_5809_new	17	16	18	10	24	17	28	12	16	13
GAGTAATGTGCGTCGT	ref_5809_new	0	0	0	0	0	0	0	0	0	0
GGCACGTATCCAAGGT	ref_5809_new	0	0	0	0	0	0	0	0	0	0
AAATCCGAGTTCTTCT	ref_5809_new	31	24	48	23	32	27	32	32	25	26
GGCTCAGTTTATATCG	ref_5809_new	10	12	13	14	7	4	8	9	7	13
GTTTATGAGCGTCCTA	ref_5809_new	0	0	0	0	0	0	0	0	0	0
ATTAGACTCGTCGAAG	ref_5809_new	0	0	0	0	0	0	0	0	0	0
GCGCCGGAAATGGATT	ref_5809_new	30	44	33	30	27	31	41	33	43	31
TGGAGCGTGGAATGTA	ref_5809_new	0	0	0	0	0	0	0	0	0	0
ATGCCGATTGGTGTAT	ref_5809_new	10	9	13	9	14	6	8	8	11	13
TTGTCACCGTTCACCA	ref_5809_new	15	11	12	19	10	6	15	12	17	11
TGGGTGTGAGGGCCAC	ref_5809_new	178	232	232	213	237	194	216	193	212	194
CATTTTGAGTGTAGAG	ref_5809_new	23	36	36	27	40	33	37	15	45	20
GACTATCTGCGTGGGG	ref_5809_new	0	0	0	0	0	0	0	0	0	0
ACAGCGTACGGCGCCA	ref_5809_new	44	41	47	42	48	31	38	29	41	44
CGAATCTACATTCCGG	ref_5809_new	13	10	18	9	18	14	12	14	13	10
TAAGATAAAGCTGCGT	ref_5809_new	30	15	35	20	24	39	24	20	30	19
TGATTTACATGTACGT	ref_5809_new	55	74	83	58	95	68	65	65	72	49
CTGGCTTTGGTCTCGT	ref_5809_new	18	21	11	14	18	7	18	18	19	16
TTGACTTGTGATGACG	ref_5809_new	0	0	0	0	0	0	0	0	0	0
CCCTCCTTATCGCTCG	ref_5809_new	8	15	10	10	13	11	17	6	19	7
CTAACAGCAGTGTTGC	ref_5809_new	0	0	0	0	0	0	0	0	0	0
GGGGGCAAGCTATTCT	ref_5809_new	48	47	55	76	41	39	49	47	57	49
ACTTAGTATCTTATCC	ref_5809_new	150	144	177	153	146	125	161	141	173	124
TAGTAAGCATGTACTT	ref_5809_new	138	149	181	168	159	145	158	130	132	126
TGACTGCATTCGCCGT	ref_5809_new	0	0	0	0	0	0	0	0	0	0
TTGTTGCTTGAGTTGG	ref_5809_new	11	11	11	3	8	10	10	12	17	6
CGGACCCGGCAAATGC	ref_5809_new	4	13	5	7	9	5	8	6	7	7
GAGCACTGCTATGGGA	ref_5809_new	16	17	13	15	15	18	18	18	20	11
TCTACCATCAACGGTT	ref_5809_new	1	15	7	4	9	1	13	4	6	9
ACATCCTACAATGAGG	ref_5809_new	17	29	16	18	14	18	22	16	19	10
ATTTTTTATGCACCGA	ref_5809_new	0	0	0	0	0	0	0	0	0	0
TTAAGACGCTCAATTT	ref_5809_new	1	5	7	2	6	3	0	3	0	6
AAGTTGGGGTTCTGTG	ref_5809_new	20	16	18	12	13	15	10	12	14	10
ATGTCGATCGGTCTAG	ref_5809_new	42	37	34	38	30	30	40	21	35	33
CCGCCAACTCTCGGCG	ref_5809_new	7	2	5	13	4	7	13	2	8	5
TGCATCGACCAATAAT	ref_5809_new	0	0	0	0	0	0	0	0	0	0
CTACATTCCGTCGATA	ref_5809_new	49	128	61	66	152	47	119	60	124	53
CCAATGAGTCCTAGTG	ref_5809_new	3	24	1	0	17	5	13	2	20	4
GCTTGCAGTATAGCCG	ref_5809_new	10	24	18	19	22	13	24	10	11	15
GGTGTTTATATGTTTC	ref_5809_new	0	0	0	0	0	0	0	0	0	0
TTTTCGGGACATGTAG	ref_5809_new	6	13	8	7	9	3	3	6	8	4
TCGTAGGTTTTGATAA	ref_5809_new	1	3	9	1	6	1	2	9	7	3
GGTCTTTTAGGCAAGG	ref_5809_new	6	17	16	12	15	8	10	10	10	5
AGTCGCCTTCGCGCTT	ref_5809_new	0	0	0	0	0	0	0	0	0	0
TTTTATTGTGTAACCA	ref_5809_new	0	0	0	0	0	0	0	0	0	0
GTTCTTGTGCATCTCA	ref_5809_new	36	45	53	65	40	50	68	43	72	54
TGCGTATGATAGGAGC	ref_5809_new	17	17	17	15	6	13	9	11	13	8
CGTTATTGTGTGGTGC	ref_5809_new	37	60	57	49	45	41	55	46	44	46
ATACCTGGTTTACTTG	ref_5809_new	0	0	0	0	0	0	0	0	0	0
CTCTGGGTCTCAATGG	ref_5809_new	0	0	0	0	0	0	0	0	0	0
CTTGCTGACGGTTTCC	ref_5809_new	22	21	17	12	11	6	17	6	18	10
CGCAGGCCTATTCGTG	ref_5809_new	71	99	74	71	62	65	70	62	90	41
TCACATCATCTGGCAC	ref_5889_new	248	255	275	289	260	231	275	203	285	206
TGCGCTCTATATTTTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TTTGGATTTATTATTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TCTGCTTGTACGCGCC	ref_5889_new	16	6	19	19	20	22	16	19	21	9
TAGATCCATTTTTTGT	ref_5889_new	44	33	51	51	43	34	45	57	45	48
ATGGTTCTAGGGAAGG	ref_5889_new	50	60	57	54	68	53	57	54	80	36
TTGGTTTACATTACGG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
AACTCCAAGGCGAGTA	ref_5889_new	47	42	58	47	41	48	58	31	52	38
ATGTTGTATAGATCCC	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CCCCCGGCACCATGGG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TGCGCTATGCGCTATC	ref_5889_new	164	188	204	163	178	171	179	165	172	150
GGGACGTGTTTGATAG	ref_5889_new	45	38	54	49	56	35	65	47	48	33
GCGTGTATAGGGCTTT	ref_5889_new	16	20	25	15	17	26	14	26	15	11
CGCCTTAAAACCTCTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GGCATGCAGTGTGAAG	ref_5889_new	218	219	274	219	192	190	191	203	222	172
TTCCACAAGTAATAGT	ref_5889_new	21	30	45	28	27	24	30	22	24	26
TTTATTTGATGCGAGT	ref_5889_new	41	38	64	46	31	49	33	38	40	24
AGGCAAAATTCGTTTC	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GCCTTATTAAAGTCGA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CTCCGAAGTCTTGAAC	ref_5889_new	19	47	38	30	33	31	43	26	27	25
ATATAACGCCCTGTCC	ref_5889_new	4	1	5	4	3	7	3	3	1	2
GGTCATTTCCCGACTG	ref_5889_new	258	256	286	217	203	228	283	232	261	214
TCACAGGCGTACCATA	ref_5889_new	14	8	16	4	9	9	11	8	6	8
GATAATAGTATACTTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GGCGCAGAAAATGATC	ref_5889_new	0	1	1	0	1	3	2	3	0	1
CATTTGTCTTTGGCCA	ref_5889_new	3	5	10	1	3	0	0	3	4	2
GGTATGCGCATACTTT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
AGTCTCGCCCAAATCT	ref_5889_new	49	50	74	48	47	44	40	65	52	37
AGGAGAGGACTGAGGA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
ACTCATTACAGAGAAT	ref_5889_new	23	26	20	30	21	19	33	18	31	23
ATGTAAGTCGTGTGTT	ref_5889_new	21	17	26	22	22	16	26	27	22	15
CGGCATCCGTCGTTGG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TGACGGTGCCCTGCAG	ref_5889_new	256	307	319	244	315	233	321	237	286	224
TTGATCATGGGAGAGG	ref_5889_new	29	34	39	27	25	26	26	29	27	38
TAGGACTTTCATTTTG	ref_5889_new	123	103	172	131	136	112	126	106	134	100
TCCACCCCGTGCCTCC	ref_5889_new	5	6	8	6	7	5	3	4	5	11
GGCCGTTTCTGCTCTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TAAGGGCAGATTAGTT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CCTAACTCCCTGAAGT	ref_5889_new	59	78	68	71	82	59	81	57	82	52
TTGAAGGCCACCTGGT	ref_5889_new	40	23	37	32	28	32	42	31	40	27
TATTGGCCAGCTAAGT	ref_5889_new	73	79	108	80	79	96	74	73	74	87
TTTAAGACTTAATATA	ref_5889_new	12	13	18	20	14	16	7	13	14	20
GATGATGTTTAGTGCG	ref_5889_new	40	49	50	33	30	32	38	45	59	35
TTACTTTACACCTCGC	ref_5889_new	33	22	27	19	22	25	28	18	31	27
TTTCCACAGGCCGTTT	ref_5889_new	8	10	23	14	12	13	12	11	25	9
TTATTGGTACAAGCTG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CTATGATGTGTAAAGC	ref_5889_new	67	91	90	76	80	71	74	51	95	47
CTCGCAATTCTTTATT	ref_5889_new	5	7	10	5	8	8	4	5	15	10
ACGCTTTGAGGCTTAT	ref_5889_new	162	203	246	204	195	191	223	198	233	177
CCGCTTTGGGCTTCTC	ref_5889_new	31	52	45	35	35	27	35	42	34	30
GATACGGTTATCGTAA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CAAGCCGACTACGCTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TCCTTCCTACAATGGA	ref_5889_new	20	19	29	19	27	24	25	16	28	16
AATTTGCGGTTAATTT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GTGAGGACCGCTAAGG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GTCATGTGCTATCGAA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TCTAGACCCCATACCT	ref_5889_new	17	24	21	11	20	19	13	14	21	10
AGAAAAGGTGCCCCGA	ref_5889_new	12	11	17	19	5	21	16	13	11	10
GCGCATATTGTCTTCT	ref_5889_new	9	6	4	5	10	12	9	3	10	9
TGTAAAGTTTAGGGGA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
AATAATTGCTTTAGCC	ref_5889_new	45	41	38	42	42	22	47	41	40	27
CTAGTGTCACGCTTCG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CAGTTTATCCGACAAC	ref_5889_new	45	40	48	39	51	35	50	47	52	46
ACCCGTAACAACTATC	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TGACTCTTTCAATCTG	ref_5889_new	42	29	55	39	38	39	44	30	26	23
TGGTGACAACGTCTCA	ref_5889_new	108	115	120	103	113	103	124	75	134	86
GGCAAGCTGTATTGTG	ref_5889_new	17	21	17	9	12	13	10	16	14	12
AAGCAGATGTCAAGGC	ref_5889_new	93	111	142	118	116	110	132	89	128	67
CTGTTGTAACGCTGCA	ref_5889_new	149	130	173	145	133	143	127	146	178	135
GATTTTTATGACTTAG	ref_5889_new	6	6	8	9	4	7	8	13	8	12
ATGAGTTTCTTAGCTT	ref_5889_new	30	47	40	49	42	39	30	43	60	40
TGTTGACGATTTTGAT	ref_5889_new	57	47	56	42	44	56	59	35	36	50
GCGGCGTTGGGTGTTC	ref_5889_new	27	31	28	21	30	16	21	24	43	20
TCTAGGAAATGCATCA	ref_5889_new	24	32	19	9	32	18	34	16	44	10
ATCCGGCCAGCGGAAA	ref_5889_new	23	29	32	34	26	35	36	23	29	20
GGGAGACCTGCTGGGA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CTGTTTGACACAACTG	ref_5889_new	85	107	108	75	119	90	111	89	114	75
CTATAGGATAGCTGAT	ref_5889_new	7	8	4	6	8	8	10	5	6	2
CACGTTTTGGCTTAAG	ref_5889_new	3	2	1	0	2	3	6	2	4	0
AAACGGTCCTCTAATA	ref_5889_new	96	93	104	86	99	80	92	90	112	72
AGCCTCTGATGCGTCT	ref_5889_new	39	38	35	38	27	32	56	32	48	22
GAGCGTCAATTTTGGT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GACAAGTAACGACCTG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CGCTCCTACCCCGTTG	ref_5889_new	13	7	15	10	8	6	12	9	15	6
CTTACTGCTCCGCGGG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GCATGTAGGGTGTACG	ref_5889_new	28	38	18	31	37	48	31	27	41	23
TACGGCATCGGTTCGG	ref_5889_new	5	0	0	5	1	4	1	1	0	2
CCTGGAGACCCCAGGT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CTTCTTTACCCGGGCA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GTGCTGCCAATCAGAC	ref_5889_new	18	18	22	29	17	14	26	13	30	15
AGTCCTTTATGACTAA	ref_5889_new	35	42	56	55	42	45	35	48	49	42
TGGTGAAATGGTTAAT	ref_5889_new	63	47	79	57	72	42	82	68	59	45
CGAACAAGTACTATAG	ref_5889_new	69	68	62	65	74	63	69	52	72	39
TCAACCTATCTATCAA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GCATCGAGATGGCAAT	ref_5889_new	165	124	184	171	145	132	132	148	137	135
GTTAGGTGCCTCCTTA	ref_5889_new	3	13	12	15	14	10	7	6	10	11
AATCCTTAGTTTTTGT	ref_5889_new	180	189	247	178	217	172	200	173	237	193
TTATCCTCGTCAAGTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
AGGTTTCTCAGTGTAA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TACTGCCCCACCGAAA	ref_5889_new	18	20	24	25	22	16	34	23	32	19
GAACTCAATTGGGCGG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TTTTCGGGTTTTCCGT	ref_5889_new	60	79	95	64	81	61	84	61	89	78
TACTATGGCCCATTTC	ref_5889_new	5	2	2	5	8	3	3	4	7	3
CGTAGCTACAGGCTTG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TATATCTCTACTCGTT	ref_5889_new	3	2	1	3	1	5	6	8	1	2
TATCTCTTATTCTGAG	ref_5889_new	5	4	8	1	7	7	1	4	9	3
CCCCTAGGAGTGTAAG	ref_5889_new	70	71	84	67	78	68	79	72	83	52
TAAGTCTTGGGCCTGG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TTTCTCTTTATCTTAT	ref_5889_new	69	66	89	88	63	76	58	58	66	84
TTGGGAGATCTGCTTG	ref_5889_new	0	0	0	0	0	0	0	0	0	0
CTTTTGTTAACAGAAC	ref_5889_new	164	199	199	189	177	153	184	176	147	162
TTTATAACGGCTCGTC	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TTCGGCAGGGTCAGGT	ref_5889_new	49	48	64	65	45	39	56	52	50	43
AACCTACACTACCTTT	ref_5889_new	25	10	18	22	29	14	15	23	15	13
TGAGTCGCTGCTATTT	ref_5889_new	28	10	31	25	14	32	21	27	11	19
AGGTCGCGTCGTTCTA	ref_5889_new	10	14	23	21	11	12	17	8	20	8
CCGATTTCGATCGCCT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GATAATCTCGTGGCTC	ref_5889_new	41	39	53	61	41	43	41	57	42	37
CCACTCTGCTGTTCCT	ref_5889_new	31	62	46	38	59	46	57	33	37	31
CAACAGGAACTTTCTC	ref_5889_new	78	70	84	60	77	52	70	69	80	54
AAATGACGCTACCAGA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TGCCCCTCTTTCTGCA	ref_5889_new	51	35	49	49	51	33	52	49	41	54
AATTCGAATAAATGGT	ref_5889_new	14	8	24	21	13	8	11	9	11	8
TCCGCTACTTAACTTC	ref_5889_new	52	77	65	59	70	57	53	39	59	41
TTAAGCCACATTCATG	ref_5889_new	58	51	86	49	66	51	71	56	54	53
ATAACCGAATGCTACC	ref_5889_new	29	22	26	29	20	17	25	21	29	15
CAGTGACATTTCCAGT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
ATTGATACGCTGTTTT	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TTTCCGACGCTACGCT	ref_5889_new	35	44	31	31	40	32	42	24	43	30
TTAGTTTGTAGCGTTT	ref_5889_new	33	23	36	26	40	25	38	23	42	27
GAGCTTTCTCCCCTAA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
TGATTTGCCTCAAGGG	ref_5889_new	39	29	52	44	32	28	33	45	35	31
TCGGAGACTCATACGT	ref_5889_new	18	27	30	28	27	25	21	17	21	14
ACTGCGGTCGCGTTCA	ref_5889_new	75	99	91	86	124	66	121	64	131	86
GAGAGTCAAGCCTGGC	ref_5889_new	4	6	9	3	5	7	5	9	10	5
TTCTATATCCTCCAAC	ref_5889_new	14	13	13	13	8	12	14	17	16	12
GGGTCCTCAGTTCCTG	ref_5889_new	36	58	54	40	50	33	32	42	60	42
GATGCGTTATGTTACT	ref_5889_new	21	25	22	27	26	22	21	18	23	13
CTTACTCGGTGTCTTC	ref_5889_new	1	2	3	2	0	3	2	5	2	1
GTTTATTAGTTAGTAT	ref_5889_new	31	21	34	30	40	24	30	25	37	16
GGTATTATGAGTCGCC	ref_5889_new	52	39	56	47	51	41	49	46	57	39
GCTTACCAGGACGTTA	ref_5889_new	19	48	41	40	41	40	48	31	42	27
TATAAGTTTTGCGCCC	ref_5889_new	12	17	24	25	23	31	14	25	24	15
AGGGATGCGTGTGTCC	ref_5889_new	6	13	11	7	10	11	5	4	9	10
TATCGGGCACTGCGGA	ref_5889_new	18	24	22	22	20	13	20	17	23	10
TGTCCCATTGTTCACA	ref_5889_new	6	15	12	7	13	11	6	10	6	10
GTAGCGTATCTCTGCA	ref_5889_new	19	33	26	24	29	28	25	28	26	20
CCATCCGCCCTCGATA	ref_5889_new	60	58	67	72	49	61	63	44	56	50
CATCCTTATCATTGTC	ref_5889_new	34	24	33	21	29	29	31	28	16	23
GAAGTAATCGCCGTGG	ref_5889_new	94	64	85	74	65	77	60	95	70	58
TCAGTTACACTTACCG	ref_5889_new	1	7	0	3	19	2	15	0	16	1
TTGAAGGGGTTGTCCT	ref_5889_new	58	63	73	49	50	48	61	58	66	58
CATACCCTCCTGGCTA	ref_5889_new	0	0	0	0	0	0	0	0	0	0
GAACGCCTATTTATGA	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CGGGGGATAGGCGCGG	ref_2920_missing	52	74	45	38	67	45	73	42	70	25
GGTAGTTGGTACCTTG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
AGGTTTTGTGTCTCTG	ref_2920_missing	5	8	10	10	10	8	3	4	16	2
GTGGCGGCAGTTCTCA	ref_2920_missing	17	26	21	20	27	14	36	6	35	8
TAAGGTTATTGTTTGA	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CGTTAACCATGCAAGT	ref_2920_missing	27	48	16	18	43	22	47	20	39	18
GCCCGTGAAATTGTTT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CACAGCTTATGGCGAT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GTTAAGACAACGCGAT	ref_2920_missing	45	76	49	41	57	39	92	37	82	37
AGTTGCGTCCTCCCGT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CGCGTGGGTATTTATC	ref_2920_missing	8	14	9	3	19	1	18	3	11	1
GTTTGTCACCCCATCG	ref_2920_missing	13	30	20	21	24	8	32	9	30	22
CGAATTAGTCGATCTT	ref_2920_missing	6	7	5	4	4	3	1	4	8	4
GGCACGGTGTAAACCC	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
TTGCTCCTGCATCGTG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CACCCTTTTTCGTATG	ref_2920_missing	10	8	10	5	22	10	13	6	9	4
ATTCTTGGCTAGTACG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GCAGCGATCTGGCTCC	ref_2920_missing	11	21	10	12	20	14	25	17	30	19
CCGCAATGGTCATTAT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
TGCAAGTGAATGTGTG	ref_2920_missing	11	9	6	6	13	3	8	5	12	7
CTGGAGTCTGATCTCA	ref_2920_missing	8	16	15	6	18	13	31	6	27	11
GAAGTCGTGCTAGCAA	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
TATGTTTAGGGCTATC	ref_2920_missing	33	49	23	27	51	24	52	33	54	23
CGATCTCCCAGTGTCA	ref_2920_missing	26	66	30	25	90	21	85	23	85	26
CCCTACTTTGGAGGGT	ref_2920_missing	27	36	32	28	49	19	53	13	57	20
TCGTGCCTATATGCAT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CGTCCCTTAGGCACTT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
TCCAACGACCAACCAT	ref_2920_missing	9	30	22	15	24	17	34	20	31	8
TCCGTGGCTTATAAAA	ref_2920_missing	4	35	13	19	37	11	45	7	38	10
TGTTCTATATCCGGAC	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CTTTGCAACTGAAACA	ref_2920_missing	5	26	10	14	19	16	18	7	17	9
GGGACGCGGCTAGGCC	ref_2920_missing	6	1	1	5	4	6	7	1	14	1
ATGGTTACGTTGGCAT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GCTCGCGTTCGCACGA	ref_2920_missing	3	12	3	5	12	9	17	2	19	4
TGCAAAGCAGGGTCAG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CGGTACCGACAGCTAA	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
ATACGAATTATTTGGT	ref_2920_missing	80	118	71	48	113	55	121	69	144	42
CAGGACATGATATTCG	ref_2920_missing	6	15	10	10	12	12	14	6	22	13
AGACTTCAACTCGGGC	ref_2920_missing	20	42	37	22	63	24	60	29	66	32
AACGTGTTAACCCGGC	ref_2920_missing	3	8	3	4	5	4	6	2	14	4
TCGCCTCTACTCTTGT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
AGCTTTTTTGCCACTG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GGTAAAGCTGAATATG	ref_2920_missing	7	7	10	14	16	5	12	7	26	9
TCACAGAGCATCTATT	ref_2920_missing	8	14	9	7	23	7	15	8	13	8
GGCCAGCTATTCTATC	ref_2920_missing	11	30	9	15	37	12	27	10	24	11
TCCGCGGTCTCTGTGA	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GGCGGTTTCCCCCCTT	ref_2920_missing	0	4	1	2	2	2	2	0	1	2
TTTGGATGTATACGTT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CTAGCTCAAGTTGGGA	ref_2920_missing	12	30	10	13	29	13	33	10	35	16
TAACTTTACTTTACTG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GAGTTTCTATCAGCTA	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
ACTTATTCTATCCTCC	ref_2920_missing	5	19	12	4	29	7	18	3	31	6
CGTTTAGTCTGTTCGT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
TATTTAGCAATTTGAA	ref_2920_missing	12	9	10	10	14	8	14	8	21	11
CCCCTATGTTGCTTTG	ref_2920_missing	6	24	6	3	25	8	42	6	28	6
TGACAAACGACAGAGG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GTAGTGGCACGTCACA	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
TGAGTGCAACACGCAC	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GGCGAGGGCATTACGG	ref_2920_missing	9	11	14	11	18	9	16	14	16	12
GTATAAGCCGGGGGTG	ref_2920_missing	1	6	0	6	2	1	0	3	4	1
GCTATACCTGTAGGTT	ref_2920_missing	2	8	2	0	6	5	7	3	8	0
GGACTCTTTGCATTAT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
AAAACCGATAGAGCGC	ref_2920_missing	26	50	39	26	65	20	59	29	95	31
ATACACGATCGTTTCG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GGCTTCTTCGCTGAGC	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
ACGGCACTATACTACG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
TGATTTCGTTACATAC	ref_2920_missing	8	21	12	2	20	8	17	12	14	3
CATATATTTATCGTGA	ref_2920_missing	11	35	32	18	39	23	46	13	31	19
GTTTGGAACCCACGTT	ref_2920_missing	43	114	56	52	91	46	127	41	105	72
AGGGATCCCATTGAGT	ref_2920_missing	18	22	19	10	25	17	40	9	36	13
CAAACATGGTTATTCC	ref_2920_missing	2	1	0	0	4	2	2	1	7	0
GAATTCATACTGAGTC	ref_2920_missing	8	14	8	10	27	10	27	3	27	5
TCCCCGGCTAGGACTC	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
AAGCCATATTCATAGG	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
CATTGTCGGCCCACCT	ref_2920_missing	0	0	0	0	0	0	0	0	0	0
GTTGGGCGCTAGTCGT	ref_2920_missing	0	0	1	3	0	0	0	1	0	0
ATGGTGACTATCCGTA	ref_2920_missing	44	70	42	46	78	30	68	30	70	27
TAACAGTGTGGATAAG	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
ACTATACGGACTCTTG	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
CTATTCTCAATGGGCT	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
TCCTACTGCGTGTTAC	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
GTAGTTACAGGTATTA	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
GAACCCTCTCGCGCGG	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
CCGGTGTTTATTATAC	ref_1772_missing	8	24	13	15	21	9	25	8	27	10
TTAGACGCACTGCATG	ref_1772_missing	5	9	3	3	7	4	8	4	12	7
TTCAGTAATTGTGTGA	ref_1772_missing	3	3	3	0	8	2	2	2	6	3
CATGGAGTTATCATTG	ref_1772_missing	13	19	10	7	24	12	16	8	29	13
GCGTGTTTTAACGTCC	ref_1772_missing	8	35	16	6	21	12	22	16	33	14
CCTTTGGTAGCTTAAT	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
AGATTCTGTTGGCATA	ref_1772_missing	5	9	8	3	11	2	16	8	17	6
CAGGCGATCGTCCGCG	ref_1772_missing	14	35	15	11	21	13	33	15	27	12
TGTGTGTATCGGTGCG	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
TCGGGTGGGGCACTGT	ref_1772_missing	50	35	46	30	52	36	60	27	57	37
AGTAGTCTCACGACAG	ref_1772_missing	12	18	12	9	21	7	14	11	10	4
GTATTCGGAGACGGTA	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
CTGTATATGAGAGCCC	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
AATGTATGTGACCCTG	ref_1772_missing	21	34	33	24	45	30	42	21	48	27
TTAGGCGCATGTTCGG	ref_1772_missing	10	22	18	6	13	11	25	16	19	11
TGACAATGCAACGGTC	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
TGCTTTGGAGCACGCA	ref_1772_missing	73	134	81	64	110	55	120	78	114	77
TACAAGTTCTTGCTCG	ref_1772_missing	6	28	10	8	14	8	22	9	19	4
TATTTCAGCGTGCGTT	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
TGCGTAGCTGCCCGTA	ref_1772_missing	16	26	10	11	26	14	17	17	25	20
GAATGCGAGTACATTG	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
ACTTGTTTGTCGAGAC	ref_1772_missing	18	30	20	22	25	20	19	13	16	11
CCCTATGTAGCGGCCG	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
CATGTAGCATTCTCTC	ref_1772_missing	33	16	30	26	33	21	25	16	18	22
GCCGGGGTGTAACTTA	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
GATTTGTCCCTCTCGC	ref_1772_missing	20	24	22	14	31	17	29	15	34	10
ATGGCCGACCATAACG	ref_1772_missing	0	0	0	0	0	0	0	0	0	0
GTTGAGATTACACTTT	ref_1772_missing	5	1	0	3	3	0	2	0	5	1
GCGGGTGGTTTTCGTC	ref_1772_missing	13	22	21	20	16	7	21	12	22	10
TCTGCCGCTCTCAATT	ref_3781_RC	120	153	172	133	123	122	155	124	155	97
TGAGGGCCTTATTATT	ref_3781_RC	77	71	88	69	81	67	85	65	87	53
GCGGAAGTTGATGAGC	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
ACTTTAGTGCTCACCT	ref_3781_RC	5	7	5	7	7	4	6	6	9	6
ATTTTTCGCATGTAAA	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TGTCCGGTATTATACG	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTTGTCTGTTCG	ref_3781_RC	14	13	16	16	13	10	15	18	16	11
CCCGCCCTCCCGGGCT	ref_3781_RC	86	84	81	81	75	74	83	75	82	78
ATGAAGCCGGTCTGAT	ref_3781_RC	7	4	9	4	1	8	9	4	1	3
TGCTCAGTGCGCCTAA	ref_3781_RC	27	33	45	26	28	21	29	20	23	20
TTGGACCGTGAATATT	ref_3781_RC	36	28	31	33	35	37	32	37	36	32
AGTCCGGTCTTTTCTG	ref_3781_RC	28	36	48	32	30	28	31	26	34	39
AGCATGGCTTTTGGTT	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
GACGTTCTAACCTACT	ref_3781_RC	62	65	64	63	48	75	61	54	72	43
ATCACTCTGAGGGCCC	ref_3781_RC	26	21	38	29	23	25	27	29	42	34
CGGGGTCTTGAGCCAA	ref_3781_RC	12	8	15	11	19	11	15	13	7	14
TATAGTATGTTTCACG	ref_3781_RC	18	16	38	15	18	11	26	11	18	15
GTCTCTACCAGTGGGT	ref_3781_RC	8	3	5	3	6	5	7	2	2	6
ATGTGGTTGCCCTTTG	ref_3781_RC	9	1	5	7	7	11	4	9	12	11
TATGTGTCATAGTTCT	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
ATTGGCCCTCCGACCT	ref_3781_RC	14	11	17	14	21	9	21	14	21	15
CCATGGCGATGTTTTG	ref_3781_RC	41	27	69	62	46	60	60	55	49	34
CCATGACCTGAATTTT	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
CCATATATCCGCATTG	ref_3781_RC	29	37	46	28	21	32	25	31	38	13
ATAAAGGTTCATAAAA	ref_3781_RC	35	28	53	35	44	27	36	32	35	31
GATTGTCAGGTCCACT	ref_3781_RC	7	10	11	4	11	15	11	6	18	7
AATGGCATGCGATCTT	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
ATGACGATAAAAACAC	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TATTATTGAGGCAGTA	ref_3781_RC	32	23	27	34	35	22	27	24	27	30
ACGCTTGACCCCTCTC	ref_3781_RC	36	21	41	25	30	31	37	22	31	28
TGCGGTATGCTTTTGC	ref_3781_RC	9	12	7	4	2	6	6	3	5	6
ATTATTCAAGATGTCT	ref_3781_RC	15	10	15	12	15	16	14	18	17	11
TTGCACAATGTGGCAA	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
GGATTATATATTACCA	ref_3781_RC	11	15	18	12	19	19	24	11	22	17
AAAAGTTGATCAACCG	ref_3781_RC	32	29	64	35	45	28	42	38	48	37
TCCATGCAATGTCTCC	ref_3781_RC	36	15	35	27	22	29	18	16	42	22
ATCCCGGGGAGCGATT	ref_3781_RC	51	51	62	53	34	45	57	39	65	41
CGGGCGATGTATGTTC	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TGCTAGTATGGTCGTT	ref_3781_RC	59	52	67	76	48	65	51	38	48	41
AGCTAGTGCCATTTCC	ref_3781_RC	30	19	21	20	30	27	24	26	22	22
TGTGGCGCGACTTATT	ref_3781_RC	41	50	58	46	49	29	50	54	51	42
AGGTCAACCCTATGGT	ref_3781_RC	18	5	11	8	10	14	13	9	15	16
TCTCATTTCCTTTTAT	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
GGGACATCCCGAGAAG	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TCGGTCGCTCTCTTTT	ref_3781_RC	42	43	52	41	48	31	46	35	44	32
GATGATGCCAAGACAG	ref_3781_RC	13	9	11	4	6	3	10	18	16	10
ATGCCGCTTAGCTTCG	ref_3781_RC	25	25	24	27	20	20	18	14	30	28
ATGGGAATGCGTGTAA	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TGTCGCGCTCCAAGCT	ref_3781_RC	57	46	65	37	61	42	66	49	53	49
CCTGTCTTCCTTCTAG	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TCCGCTCCCCCTACGT	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
ACTCGATAATTCTGGA	ref_3781_RC	68	71	71	76	82	69	83	50	54	47
ATATCGCGTATTATGG	ref_3781_RC	79	57	91	69	68	64	53	80	59	58
TGGATACTAGGAGTTT	ref_3781_RC	17	19	24	15	12	9	26	22	31	20
TCTCCATATCCTAGTG	ref_3781_RC	11	7	8	13	10	7	10	7	13	7
TTTTTGGTCTTCATCT	ref_3781_RC	34	32	37	41	33	32	23	40	33	23
CTCGCGGGCTTATCGT	ref_3781_RC	33	47	26	34	40	38	37	33	30	36
GTAGAACCATGCTAGC	ref_3781_RC	41	33	21	25	24	27	34	23	39	19
GCCAAGAACCTGTTCA	ref_3781_RC	1	0	2	0	1	1	0	2	0	2
CGAGGCAGTTTGCGCG	ref_3781_RC	35	39	44	40	41	42	46	34	40	41
TCATAATCGGCTTCTC	ref_3781_RC	14	15	14	19	12	18	6	11	13	11
GCTCGGTGCAAAGGAA	ref_3781_RC	65	67	89	76	73	80	69	62	67	59
TCGGGCTACTGGGTGC	ref_3781_RC	15	20	16	7	22	14	24	6	21	6
ATATCATTCTATCGGC	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TACCCCCGGTAATGTG	ref_3781_RC	0	0	0	0	0	0	0	0	0	0
TGCCGGAGGGTTTGTT	ref_3781_RC	26	31	26	23	20	20	19	24	27	22
CAAATCGTTACTGTCG	ref_3781_RC	32	25	28	32	27	24	24	27	20	17
TTACATGGACGCCCCC	ref_3781_RC	8	10	6	11	10	14	6	11	11	5
GTTCGCATAAAGGTTT	ref_3781_RC	7	13	10	16	10	14	7	10	10	15
TTCGATATTCCGTTCA	ref_3781_RC	6	2	10	9	4	9	5	5	10	6
TTCAACCGATTGGACC	ref_3781_RC	7	14	10	10	14	6	30	8	19	10
GTACCCCTACGTACAT	ref_3781_RC	11	17	16	9	21	7	22	7	25	14
GTGAGCTTCCTTCTCC	ref_3781_RC	2	0	4	1	3	0	0	0	2	1
CAAGCCTACGGCATGA	ref_3781_RC	92	106	76	93	93	90	85	99	102	81
GCCATTTCCGGACGGG	ref_862_fdr	4	7	4	1	6	0	3	4	10	1
TAAACATCTGACGGTC	ref_862_fdr	39	40	30	24	27	33	33	24	37	29
GTATTCCGCCCCGTCG	ref_862_fdr	36	68	34	14	52	35	63	25	66	19
AAAATGTAGCTTTGGT	ref_862_fdr	7	0	10	3	8	7	2	5	5	4
GCCTACTAAACCCTAA	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTCCGCCACCCTG	ref_862_fdr	269	302	374	281	301	237	335	243	364	272
TGATTATGGACTCAGG	ref_862_fdr	48	50	63	51	70	39	81	59	45	42
AATTTTCGCACAGCGG	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCGTAATTGTATT	ref_862_fdr	4	4	8	3	3	3	10	10	7	3
CCAAGATAACTAGGTG	ref_862_fdr	16	30	18	22	20	13	21	23	23	18
CGCTGTTCGCTAGAGC	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
AATGTCAGTGCTCTTT	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
CGATCATCGTACTGTC	ref_862_fdr	1	4	1	1	3	3	5	0	0	2
ACTAGCAAGCAATCAA	ref_862_fdr	47	68	57	40	72	46	56	40	59	58
GATCAACCGTCCCCGT	ref_862_fdr	25	50	43	35	35	24	42	31	55	26
ACCGGGCTATGTCTCC	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
AAGCAGCGTACCGGAA	ref_862_fdr	11	19	13	9	13	7	12	8	17	12
TTTCCGATTTATAAAC	ref_862_fdr	53	54	52	34	46	31	36	33	58	31
CCGGAACCCTCCGTCG	ref_862_fdr	29	39	36	27	38	27	35	34	53	25
GGCTTATCTAGCTTGT	ref_862_fdr	54	69	69	76	79	59	56	55	89	57
TTAGCAATCGGACCGC	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCAGTGATTCTTC	ref_862_fdr	2	4	6	2	4	6	1	7	1	7
ATCGGTCGGCTGTCAT	ref_862_fdr	39	53	30	35	62	27	50	30	57	33
CTGCTCCGCCCCCCTG	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCGCCACCCGTAG	ref_862_fdr	70	88	89	97	91	72	81	81	96	65
CTTCTCCATCCAGTTG	ref_862_fdr	93	98	110	73	121	83	102	82	123	84
ATGCCCGCGCTGTTCC	ref_862_fdr	23	43	31	26	34	26	41	33	43	25
CGTCAATATTTCTGAT	ref_862_fdr	2	2	0	4	1	4	0	1	1	2
CGAACGGCTCACTGGT	ref_862_fdr	97	94	117	125	104	97	121	85	115	76
GGGTTGTAGTGCATCC	ref_862_fdr	26	21	17	21	19	21	21	14	23	12
GGTCTGGAGTCGCTGC	ref_862_fdr	62	91	80	67	83	71	82	63	76	54
AAACCACGAGTTTCGC	ref_862_fdr	50	71	57	42	65	53	59	47	63	47
CTAATTCCATAGTCAT	ref_862_fdr	21	14	11	9	16	10	16	9	15	12
GGAGCACCATATAGTC	ref_862_fdr	4	8	4	5	4	3	7	4	3	2
AAACGCTTCTATAGTC	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TGAGATCAGTTTTTTT	ref_862_fdr	44	67	57	44	69	39	66	41	64	41
GATGACGTTTACCAAT	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGAGTGATATGGC	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTATCTTATCTAC	ref_862_fdr	13	25	31	19	24	18	22	11	20	15
GTGCTGTCTGTTTAGT	ref_862_fdr	8	12	5	11	9	7	9	9	10	6
CACCTGGTTACCTCGT	ref_862_fdr	16	13	23	12	30	13	26	18	19	12
TTGTTATAGGTTTTTT	ref_862_fdr	21	19	37	22	23	40	35	13	39	31
ACCAGACGCATTGCTC	ref_862_fdr	30	32	41	25	47	19	49	27	51	24
TTCGAGCGCATCTCAG	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCTGCCGGTTTAT	ref_862_fdr	96	89	122	109	124	83	95	90	113	92
GGAAAGTTCTAATTGA	ref_862_fdr	28	34	38	22	44	28	35	23	40	21
CACATGAGTATCGTGG	ref_862_fdr	26	65	28	28	57	30	57	27	52	27
GGATCTAAGAATTTCT	ref_862_fdr	17	27	25	13	24	22	21	20	25	14
AGGTTCTACCATTTTT	ref_862_fdr	6	8	7	8	18	11	16	7	15	7
TATTTATCTTAATCAA	ref_862_fdr	34	40	27	42	31	25	41	26	31	26
ACAATCAGTGCGCAAA	ref_862_fdr	39	55	49	39	63	54	58	38	51	33
AACTTTTGGTAGTGCC	ref_862_fdr	5	9	12	4	9	5	7	8	9	3
CTAACCCCACTTAGAG	ref_862_fdr	0	0	0	1	0	0	0	0	0	1
TCACGGTTAGCCCTTC	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
ATGTGGCGACCCACGT	ref_862_fdr	26	13	23	16	26	27	22	16	19	12
GCTCTCTTGTTGTGTG	ref_862_fdr	4	21	28	10	26	7	23	13	20	16
ATTTCACGGATACAAG	ref_862_fdr	8	3	15	9	11	6	13	10	11	3
GAGCATCATAAAGTCG	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCGGTGTCCTTGC	ref_862_fdr	9	18	19	15	19	13	16	17	14	16
GGTATGAAAAACGCAC	ref_862_fdr	113	116	165	134	124	114	126	108	133	98
CTTCGAGAAATGGACC	ref_862_fdr	34	48	40	32	53	39	44	33	40	32
GATAGGGTGTATTGAG	ref_862_fdr	48	63	78	65	63	63	74	56	73	38
CTCTTCTTCATCAGTA	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TGACTGTTCATAACAC	ref_862_fdr	13	19	16	13	18	11	20	16	21	10
GGAAGATTTCGGCTAC	ref_862_fdr	12	24	22	9	10	9	9	14	20	11
ACAATCCAGCCAACAT	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCGGCAATTTGCC	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TTACGCTCGTCTAGAA	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TGGAGCTGGGCTCGTA	ref_862_fdr	19	29	27	17	26	27	22	20	25	15
TCCGTGAGGTATGCCT	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
GATTGCGACTCAGCCT	ref_862_fdr	58	112	58	69	80	48	86	50	89	56
GCAGCGACGTTACCAT	ref_862_fdr	20	38	31	33	64	26	52	33	66	25
TACCCGCAATTCCGAT	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TCATGCGTTTCAGCCT	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
CGTATGCCGTCGCTTA	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
TGCATGGTATTTGACG	ref_862_fdr	55	57	59	42	72	38	66	51	79	46
TAATTAACATGTGACT	ref_862_fdr	43	42	52	64	54	38	37	45	58	40
GTGTGTCATTATTCCT	ref_862_fdr	7	11	14	7	7	3	5	12	10	6
CGATCCCGTGAAGTTT	ref_862_fdr	18	31	32	16	21	14	23	17	27	18
GTTGATGGAGCTAGAG	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCCAGGATTTTCT	ref_862_fdr	26	26	15	28	16	22	21	17	22	21
TACATTATCCGGTTCC	ref_862_fdr	43	33	52	46	44	27	43	32	47	29
TATTCAGTCGCATTGT	ref_862_fdr	22	10	11	9	14	4	18	9	10	15
ATATGCGCTTGGATGG	ref_862_fdr	131	139	144	130	113	108	157	128	155	103
AAGCTTGCATACTCAA	ref_862_fdr	3	0	3	1	5	2	4	4	2	2
AACTTGCCTCACAATG	ref_862_fdr	75	99	78	86	94	76	103	76	93	62
TCAAAATTATGGGTCT	ref_862_fdr	41	38	50	45	52	32	52	44	52	37
AAATTGCCGACAGTTT	ref_862_fdr	9	8	7	11	14	13	10	3	10	6
TTAGTACGTGCTTAGA	ref_862_fdr	21	35	33	33	40	27	55	16	46	10
CCTACCATCGTGGGTA	ref_862_fdr	7	20	11	15	25	5	19	8	18	9
AGTCAGGATTTGGTAC	ref_862_fdr	51	55	38	29	47	33	45	45	63	29
GGCCATACGAGTGAGC	ref_862_fdr	53	65	47	69	49	55	43	42	66	44
TCCCCCAGTCCATAGT	ref_862_fdr	18	20	15	19	24	25	19	19	21	19
GTTCATCATGGACTTT	ref_862_fdr	23	22	23	36	29	29	42	30	24	18
CAAGGTCCCACGACAG	ref_862_fdr	20	28	25	20	19	13	25	17	30	20
TCATACCCATGGTTCG	ref_862_fdr	24	41	32	22	30	26	37	24	30	18
ATTTACTATTCAATGT	ref_862_fdr	0	0	0	0	0	0	0	0	0	0
ATACAGGTTCAATCGT	ref_862_fdr	4	4	6	4	5	4	5	1	2	1
TCGCGCCTCAAAGAGA	ref_862_fdr	6	5	14	9	6	6	5	12	9	12
GGCATTCCGCGCGTGG	ref_5781_new	10	11	21	7	12	20	12	15	14	11
CTCTCCGGGGCTGGGG	ref_5781_new	9	4	8	7	11	5	15	8	4	7
CACAAATTTTTGATTT	ref_5781_new	62	59	78	53	87	62	85	67	60	49
CTTGGACGCTGCCACG	ref_5781_new	0	0	0	0	0	0	0	0	0	0
TTTTATCAATACAGCA	ref_5781_new	0	0	0	0	0	0	0	0	0	0
ACCATTCGCGTACTAT	ref_5781_new	43	55	55	64	63	41	60	46	65	42
GATACTGTCCTGTTTT	ref_5781_new	11	12	12	18	9	9	10	16	19	11
ATACAAGTATGCTTGA	ref_5781_new	21	32	39	22	36	19	37	26	30	19
ATCGCTTACCCACGTT	ref_5781_new	13	60	24	22	48	21	47	17	57	16
CCACACGACCTGCTAC	ref_5781_new	3	9	14	4	4	3	11	6	15	14
TACAAGGTTGTGTATC	ref_5781_new	0	0	0	0	0	0	0	0	0	0
TCAATAGGTGCATCGA	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CATGAGGCAAGTCCAC	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CTTCCTATACAAATGT	ref_5781_new	7	5	8	4	5	3	7	4	11	5
CGTACTTCCATTATGC	ref_5781_new	51	66	56	60	59	37	92	54	92	55
GGCACTACGTGTCGTA	ref_5781_new	0	0	0	0	0	0	0	0	0	0
ACGACGGCGATCCCCT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
GGTGGTGTAGATGGGG	ref_5781_new	122	118	131	101	147	124	143	121	140	109
GCGTTGCAACGCGACC	ref_5781_new	0	0	0	0	0	0	0	0	0	0
GTCTGGATCCACGTAG	ref_5781_new	29	40	51	40	52	32	55	35	51	33
AAGTACCTATTCGACC	ref_5781_new	30	44	19	22	43	16	46	26	56	15
AGTTGTATGTTTCACT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
GTCCGTCTAATTATAC	ref_5781_new	45	58	58	49	71	51	84	32	52	37
TGCTTTGTTATGCAGA	ref_5781_new	55	62	64	46	71	52	58	58	72	42
GCTGGTGCGGGTAAGT	ref_5781_new	27	38	27	35	28	26	21	23	31	27
GGCTGAGTACCACCGT	ref_5781_new	10	8	8	6	11	11	10	6	12	6
TGTCAGGACAGGCTTT	ref_5781_new	15	22	23	15	26	20	13	21	20	21
AACACGATCGACAATT	ref_5781_new	15	11	7	5	14	6	8	11	10	7
CGGCTGGTGCTGGAGG	ref_5781_new	120	118	153	118	130	94	140	108	146	103
TCGTTAGTTCCGATCT	ref_5781_new	15	13	15	12	10	8	21	5	15	16
TCCAGGGTGTAAACGG	ref_5781_new	2	7	6	5	12	6	9	7	12	1
CCCTCTCCGTTATGCT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
AAGGTAAACTCAGCGC	ref_5781_new	6	14	11	5	8	6	5	11	13	9
GTTTGATGGTTCCTAC	ref_5781_new	14	10	11	10	9	6	7	3	7	9
CGCGTGTACTGGTCGT	ref_5781_new	70	73	101	83	101	74	85	63	107	83
GATCTGCGGCGCTTCC	ref_5781_new	3	2	2	0	0	3	7	3	1	6
GGTGTTTCAGATCGGC	ref_5781_new	25	37	30	22	32	32	33	25	31	22
GTAATCTTTGTCAATT	ref_5781_new	35	29	39	31	37	37	37	30	54	14
CGTACGCTTGACCGAC	ref_5781_new	7	9	9	12	23	12	14	20	17	9
TAGGTTCAAGCGTCGG	ref_5781_new	8	16	23	12	17	10	12	7	14	4
TTCCGCTTGTAATTGG	ref_5781_new	81	115	113	106	129	83	168	80	150	90
TGGGCCGTGAAATGGG	ref_5781_new	101	136	143	118	124	102	144	95	118	81
CTTTACGCGCTCCCCT	ref_5781_new	11	23	15	13	22	11	23	13	14	8
ACCAAGGTTAGCTCTT	ref_5781_new	4	11	5	11	6	7	8	5	8	3
CTCCGCCCACAGCCTC	ref_5781_new	7	2	3	7	3	4	10	5	6	8
AATGTCGGCCTACTTT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CAATCGTCCTGCAATA	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CGCAGATTTGGTTCAG	ref_5781_new	0	0	0	0	0	0	0	0	0	0
ATTTCTAGCTCACTCG	ref_5781_new	44	73	53	36	63	26	70	35	87	31
TTGTTTGTGAGTCCCC	ref_5781_new	28	28	37	27	28	24	35	26	43	16
GTGACGAGTATCCATT	ref_5781_new	15	15	18	12	15	11	16	17	13	5
ACTGATGTACGCTCGT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CTTTGTCTCGCTGGGC	ref_5781_new	0	0	0	0	0	0	0	0	0	0
ATTTTTTCACCCGTTT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
TATGGGCTGCAGATCC	ref_5781_new	38	32	57	32	46	39	46	35	51	38
CTAGCTTTTCTGTATT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CCGGCTTTTGCTCGGA	ref_5781_new	7	28	19	23	39	15	29	15	28	13
ACGAAGAATATGCACG	ref_5781_new	78	61	61	78	71	61	84	77	80	56
TATGGGCTACAGATCC	ref_5781_new	28	33	28	29	39	29	34	17	37	24
CTCAGTGATTTCGACT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
GTACTTCTGTGGCTGT	ref_5781_new	45	51	53	46	52	37	55	34	57	34
CCGTTTAAAGCATGGG	ref_5781_new	0	0	0	0	0	0	0	0	0	0
TGGGCCAATGGATGTG	ref_5781_new	9	10	20	10	18	12	14	4	16	2
ATGGTGTGTCAACACG	ref_5781_new	0	0	0	0	0	0	0	0	0	0
TTGGGAATGCATGCTT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
GCTTGGGGTATATTTG	ref_5781_new	51	52	74	65	87	82	86	34	89	46
TATTCGTTACTTTATT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CCCAAAGACACTCTTT	ref_5781_new	0	0	0	0	0	0	0	0	0	0
ACTGCGGATGGCGCGC	ref_5781_new	37	28	44	30	41	55	41	41	43	41
AACTTGCTGTCAGGGC	ref_5781_new	1	0	2	0	1	0	2	1	0	0
GTGGTAATGGCCTGGA	ref_5781_new	0	0	0	0	0	0	0	0	0	0
CTGCATGCATTAATCC	ref_5781_new	0	0	0	0	0	0	0	0	0	0
ACAACAGTTTTTCTGC	ref_5781_new	0	0	0	0	0	0	0	0	0	0
ATATGCAATCGTACCG	ref_5781_new	0	0	0	0	0	0	0	0	0	0
GGATTTATCCCTCGTC	ref_5781_new	25	45	35	35	32	20	40	14	30	15
TCGGGTTTCTCTGGGA	ref_5781_new	57	62	63	60	61	66	65	71	81	63
CTGATCAGTAGAGTTG	ref_5781_new	4	1	1	2	0	1	1	2	1	2
AACTTCCGCCGGTTTC	ref_5781_new	9	13	6	6	5	6	9	11	10	7
TTCATTAATCGAACCC	ref_5781_new	26	34	25	24	44	27	32	29	27	34
AGTGTCTTCATTCATG	ref_5781_new	13	20	17	16	17	17	42	15	27	16
TCCTAGTGCAGCGCCA	ref_5781_new	25	41	39	25	39	21	50	23	50	30
AACTTGAAAATGTCCC	ref_5781_new	23	16	23	21	19	13	20	18	22	23
GTCCGTTACGTTTAAA	ref_3763_missing	3	16	4	4	10	3	12	3	11	2
CCTCGAAGTCTCTCTT	ref_3763_missing	6	27	15	5	32	4	23	3	20	2
TTCGGCAGGATTTCAG	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
GCTATGCGTTTTGGTA	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
GCGGTGCAATACCGAG	ref_3763_missing	39	53	38	19	75	23	69	20	59	22
TCATCAAACGAATCTA	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
TGTCCGGGTCGTTACG	ref_3763_missing	0	2	0	0	0	3	3	0	0	1
CTGTTAAGGTGGCTTT	ref_3763_missing	17	45	28	26	52	25	48	22	45	16
CGCACTCGCTCGCTAT	ref_3763_missing	14	76	36	22	67	21	68	33	60	22
CTGCAGGTAAGCGGGA	ref_3763_missing	7	14	8	9	15	7	20	5	21	3
TATTTGGAGTAATATA	ref_3763_missing	1	1	3	1	3	0	4	4	3	4
TCGGAGTATGGTTTGA	ref_3763_missing	21	48	15	21	55	13	35	16	48	10
CCTATTAAGCTCTGTA	ref_3763_missing	38	90	39	31	105	30	124	20	134	25
GGGCTCAGGTCCAGGG	ref_3763_missing	19	49	15	14	51	15	34	12	61	7
ACTTCTGGTTTCGGTT	ref_3763_missing	9	15	5	7	18	10	22	5	22	5
AGTTTGCTATTTTATC	ref_3763_missing	4	23	13	8	23	9	17	10	35	9
ACAGTAGTTCTGCGCC	ref_3763_missing	4	5	4	3	8	2	11	0	4	1
GGACCGGCGCCTTGTT	ref_3763_missing	3	15	4	2	11	3	2	1	7	1
CCGATGCCATCGACCA	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
ATTTCGCTTTCACTCC	ref_3763_missing	1	14	0	0	24	1	23	0	16	0
CGGCTGTGGATTCTAT	ref_3763_missing	13	58	31	17	75	27	70	24	83	21
ACTGAGCTTCACGCCA	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
GGAGGCTGATATCGGT	ref_3763_missing	3	11	3	2	6	3	10	4	10	5
CCCATTTGTACGTGTG	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
CCCCTCTGAGCAGTAA	ref_3763_missing	1	1	2	0	2	0	2	0	2	1
CTCTACGTATGCGGTT	ref_3763_missing	2	2	1	1	3	2	1	2	3	2
CTAGGCTTTTTCTCTA	ref_3763_missing	3	14	7	6	9	5	15	2	21	8
ATGTGTCTCAACCTAT	ref_3763_missing	8	14	14	6	22	9	13	4	22	4
ATCAGGACCATCGCCA	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
AGGTTTTCTGGGAGAC	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
TTTAGGCCCGCGGAAT	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
CGTATCATGTCGATCA	ref_3763_missing	6	15	9	9	20	13	11	6	14	8
AACCAGTGCCGTAGAC	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
TCCGGTGGTACTTAGT	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
TAGCTGAGCTAACACC	ref_3763_missing	0	0	0	0	0	0	0	0	0	0
TTTACGGCCTTATGGC	ref_3763_missing	36	85	55	43	120	43	100	47	116	43
CGTGCGTACTGGATTA	alt_1116_upstream	5	15	7	5	9	6	18	2	12	8
AGCCTTGCTGGATTAG	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGGCCGGCTGTCA	alt_1116_upstream	8	7	12	5	6	7	3	5	15	13
TCGATTTCCAGACGAT	alt_1116_upstream	32	32	30	36	15	23	31	24	31	21
TTGCAACCTAGAGTCC	alt_1116_upstream	152	126	202	154	134	136	159	169	175	130
ATTTCGGAGGAAGCAA	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TAACAATTCTCCACCT	alt_1116_upstream	28	37	34	29	27	28	44	25	28	20
GGTTCGTGTCTAGATC	alt_1116_upstream	184	207	192	221	225	182	200	180	226	190
ATGGTCTTTCTTAGGC	alt_1116_upstream	28	22	48	39	37	44	34	20	29	16
ACATGCGTACAGGCGG	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TAATCCCGTAGTATAA	alt_1116_upstream	19	17	28	19	27	17	32	22	19	22
CATTAGTATCGAGTAG	alt_1116_upstream	14	7	13	18	13	8	15	8	9	13
CAGTCGAGTTGATAAA	alt_1116_upstream	30	43	34	35	48	21	32	30	54	22
AGTGGCCTGTCGACTG	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGGCTTCGGGCTC	alt_1116_upstream	26	40	24	22	29	19	29	18	28	13
TGCTTTGTCTATGTGT	alt_1116_upstream	23	25	30	26	30	20	22	20	29	18
AGAAAGTGATTGATAC	alt_1116_upstream	209	216	299	257	234	179	238	250	241	222
CCCAAGGTCCGCTGCT	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCGCTTTTAGCTC	alt_1116_upstream	79	99	95	96	96	88	90	70	97	72
AGCGTTGAATGCGCAG	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
CACCATCATTTTTTTT	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGCTACTGCGTCT	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGAGGGTATGCTC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
AGTACTATGTGATTCT	alt_1116_upstream	16	8	6	15	20	11	15	12	14	13
TGGGCCGTTCGTGACG	alt_1116_upstream	129	108	144	114	80	116	99	83	99	101
GTCTCGAGCATGTGTT	alt_1116_upstream	31	36	42	47	39	34	47	28	56	28
CTCCCTCGCGTACGCC	alt_1116_upstream	2	16	7	5	17	5	21	2	16	4
GCTGAAACTACGATAA	alt_1116_upstream	9	10	13	5	14	12	9	7	10	14
CGTCACGTCATAAGCA	alt_1116_upstream	46	23	57	47	33	51	42	50	34	41
CTACTTTCAGTAATTT	alt_1116_upstream	9	6	12	6	6	9	12	5	15	10
GTCTGCAATTCTGGCC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
CATCATGGTAGCAAAA	alt_1116_upstream	19	22	26	32	16	17	10	24	22	13
GCCGAGCTTTATTTAT	alt_1116_upstream	8	4	4	4	5	1	3	10	3	4
CAGCAGTTTCGGGATC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TACCTGATGCTTCCGT	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TAGTAGTGGCGCGATT	alt_1116_upstream	18	17	29	23	21	22	31	26	23	27
AAGAGGTAACACCGTT	alt_1116_upstream	8	13	15	19	20	16	20	11	21	11
TCATCATGTTGATAGT	alt_1116_upstream	67	79	105	82	90	65	75	70	81	74
TTGACTACGCTCGCAT	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTATATTATTCCA	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
GTCTACGGTTTTGGAA	alt_1116_upstream	80	70	74	71	94	60	87	59	73	74
ATGAGCGTTCGTATGC	alt_1116_upstream	6	8	6	4	7	5	4	6	6	7
GGCCGTATCTCCTTTA	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
ATCTAACCACGAATCA	alt_1116_upstream	18	35	30	28	28	20	42	25	31	26
TCACATATGTAGTAGC	alt_1116_upstream	19	34	23	25	35	20	33	19	42	19
CTGTATCGCGTGCTTT	alt_1116_upstream	0	0	0	0	0	0	0	0	0	1
GTCGTTGGTGGTTTTA	alt_1116_upstream	4	5	14	3	1	2	4	4	5	7
TTTTTGGGCCGACTTG	alt_1116_upstream	7	7	3	1	3	4	13	1	4	3
TATCGAATGCGATACT	alt_1116_upstream	30	26	21	21	18	21	26	14	22	27
GTACTGTCGTATTTTG	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGCCTTCACTTAT	alt_1116_upstream	53	47	47	51	45	43	51	53	33	50
TCTTGTTCGTGTGATC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
GCGATCTCCTGGTTGC	alt_1116_upstream	42	43	55	37	43	39	46	23	39	34
CGTGGTATGTATCTGG	alt_1116_upstream	6	7	12	11	5	9	7	4	7	3
ATCTCACGGCACACAA	alt_1116_upstream	60	98	122	96	94	93	92	91	90	111
TAAGGCATTGTCTGGG	alt_1116_upstream	48	53	66	61	54	46	55	59	60	49
CAAATGACGGACTAAT	alt_1116_upstream	31	33	46	37	24	39	27	29	37	24
GGTCTTATCCTGGGCG	alt_1116_upstream	88	89	115	94	84	94	102	81	119	71
TGACGTATTGGTTTTA	alt_1116_upstream	34	18	41	32	33	30	25	31	30	32
TAAGACTGTTCACTGT	alt_1116_upstream	11	11	20	9	15	7	19	10	16	8
CCCTGAGGTTGATATA	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
GGACATGGGCCGAAAC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TCGTGGCGTCCATCTC	alt_1116_upstream	11	19	21	17	21	13	12	20	26	20
TGAAATGCATTTAGAA	alt_1116_upstream	120	76	100	105	95	67	87	75	86	73
TCGCTGCTAGGTCTTT	alt_1116_upstream	23	37	41	27	27	25	38	16	50	16
CCTAGGCTATTAGATG	alt_1116_upstream	26	69	36	25	77	24	53	19	68	19
GCTAATATTGATACGC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGTTACGTCGGT	alt_1116_upstream	6	8	8	3	14	7	8	7	9	5
ATGCGTCCTATTTTCA	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTACATCGAACTA	alt_1116_upstream	71	68	74	75	68	70	67	64	83	48
ACGGTCCCGGCTTTGG	alt_1116_upstream	22	15	32	31	21	26	25	19	31	24
GCGCCGTAAGCCCCGG	alt_1116_upstream	6	5	8	5	5	5	7	9	2	1
AATACCATGCATCAGC	alt_1116_upstream	7	8	17	5	3	7	9	6	12	7
ATTGTCTCATTTATGT	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
CGTAATCTACATGCGG	alt_1116_upstream	15	25	11	13	9	12	13	12	12	12
TATTTCCGCGAGTGAT	alt_1116_upstream	2	1	0	1	1	1	2	1	0	2
CTTCCATAGGTAATCG	alt_1116_upstream	43	63	73	56	77	37	73	57	68	41
GAGATAATCACTTGCC	alt_1116_upstream	47	36	75	59	55	40	67	54	47	32
TTCCTCGTAAGTTGTC	alt_1116_upstream	45	43	50	41	46	35	48	39	49	34
ATTGGGGTTCCCGTTC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTAGCTTATGGTT	alt_1116_upstream	3	11	13	9	9	2	9	7	13	3
TTTTCAGCCGCAACGT	alt_1116_upstream	13	9	16	17	16	16	11	11	10	8
AATAGAGTCCGCTGGA	alt_1116_upstream	54	42	74	39	46	38	56	45	70	38
TGGGACTCAATCTAAC	alt_1116_upstream	16	24	18	16	19	12	22	16	21	16
CAGTCACATAGGCGAG	alt_1116_upstream	17	4	20	17	14	11	18	18	22	16
GTACAACAGGGCTCCC	alt_1116_upstream	19	36	35	23	27	14	30	29	32	13
TACGGATGTCTTGTCT	alt_1116_upstream	11	6	12	6	8	11	6	7	7	8
GGGCTGTCCGTACGCC	alt_1116_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGCTAATGAGCCA	alt_1116_upstream	26	42	31	11	52	26	45	13	56	5
TGCTATGCAACTTCAC	alt_1116_upstream	9	4	11	9	15	13	13	16	12	7
CGCCAGAATCGTGCCG	alt_1116_upstream	11	15	13	10	20	17	13	10	17	12
GGTTGATGATCAGGGT	alt_1116_upstream	31	31	26	40	26	26	23	32	33	23
AGTAATTTTGAGGACG	alt_1116_upstream	7	7	8	11	7	11	7	8	12	9
CTTCTTCCAGAATGTA	alt_2582_reverse	10	18	11	14	14	13	14	8	5	11
CAACTCCTTCGATCTC	alt_2582_reverse	38	26	36	41	27	35	28	29	31	20
CGGCTCATGTCCCCTC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGTGCGATACAAA	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTTGTCGGACCCG	alt_2582_reverse	32	29	39	43	47	31	34	22	37	28
TCTAGTCTGGGTGCAT	alt_2582_reverse	1	6	1	2	3	6	5	1	8	2
CTTACCCCCCGGAAAG	alt_2582_reverse	7	22	13	12	16	11	27	13	22	7
GTGTATTTTTCCCAGC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCGATAAGCCTAC	alt_2582_reverse	4	8	9	6	5	3	2	3	4	2
CCCGGTCATCTGTGTG	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TGGCATAAGCTATTTG	alt_2582_reverse	13	5	12	10	14	13	8	6	21	10
GGTTGCCCGCTTATAG	alt_2582_reverse	12	15	19	30	14	13	25	20	26	14
AATACGATGGATGCTT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
GATATAAAGACAGCCG	alt_2582_reverse	34	36	47	43	42	42	30	34	30	35
CCGTTTCTACACTGCC	alt_2582_reverse	12	18	19	12	16	8	17	22	15	16
CGTTATGGGGTAAAAT	alt_2582_reverse	95	61	90	81	80	77	58	79	62	56
ACGTTCTGGGACCCAC	alt_2582_reverse	13	24	21	21	18	7	14	13	13	7
ATTAGCACTTCGCCAG	alt_2582_reverse	14	8	27	17	20	10	15	10	18	14
TTGCTTGCGAGCTTTA	alt_2582_reverse	12	10	18	12	17	13	13	10	23	11
CAATCGATGAGTTTGA	alt_2582_reverse	49	32	48	56	42	34	41	44	48	30
GGTAGAGCTTCAACGT	alt_2582_reverse	32	52	51	45	38	42	46	35	54	38
CCATTGCATGTACAGG	alt_2582_reverse	5	17	11	9	21	7	17	10	7	8
TTGGAGTGCATAACGC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CGCGAACGAATTGTTT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGTGATCCGATTA	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
AATCTCACAAATTTCT	alt_2582_reverse	66	66	77	54	46	63	56	51	50	59
TCGCCTCCTTTCCATG	alt_2582_reverse	50	55	78	49	67	58	65	61	68	41
GTCACATTCGTAGAAC	alt_2582_reverse	20	49	25	26	55	27	43	12	48	25
AATACGTACTTACCAC	alt_2582_reverse	0	15	0	4	15	3	21	4	15	2
CTAGACAACCTTGTTG	alt_2582_reverse	38	58	57	57	55	48	60	44	78	25
GGAATGCCCGTTTTTA	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTAACAGGCGCGC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CCTAACATGCACGAGC	alt_2582_reverse	17	4	17	10	12	14	10	13	5	9
TCCTAGATATTGGGAC	alt_2582_reverse	97	89	100	86	75	82	85	85	103	85
AATCAGCGTACTCCAC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGTGGAGCCGTGA	alt_2582_reverse	48	61	58	66	37	37	60	37	56	43
GCATGTCTTGACGTGT	alt_2582_reverse	32	42	41	38	36	35	49	41	43	33
CCCGGCTTGACCCTCT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCGCACCAGCGAGAAC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TTATGTTCTGCTCCAA	alt_2582_reverse	34	29	47	28	24	29	29	32	32	34
CCCCTGTATTTCATGG	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CAAGCTGTCCGTCCTT	alt_2582_reverse	15	16	24	33	26	16	14	17	25	18
GGTACTTCTGCCGTTA	alt_2582_reverse	3	2	13	9	5	13	4	14	3	10
TGGATGATGTACTTGA	alt_2582_reverse	4	1	8	1	2	4	5	0	2	0
ATGCGAAAGATCCGGT	alt_2582_reverse	7	11	20	15	9	12	9	8	12	15
TCCGCTTTGCAGATTG	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGCAGTCAAGTGT	alt_2582_reverse	6	2	0	0	2	1	5	2	2	4
ACTCGGGAATCTGTCT	alt_2582_reverse	34	25	37	30	25	27	20	27	33	33
ATGCCACGATAAGTCT	alt_2582_reverse	22	22	20	21	20	14	32	23	23	21
TCAGATCTAAACCTAG	alt_2582_reverse	15	19	21	14	8	19	12	22	13	20
CGTTTTGTTTGACGCT	alt_2582_reverse	26	26	31	21	37	27	37	28	28	22
GAGCTAGCGCTGCGCA	alt_2582_reverse	8	5	7	7	12	8	8	4	8	10
CCCACAGTTCCGGTTG	alt_2582_reverse	24	15	25	24	22	16	15	27	24	24
CTCTCAACTCTGGAAA	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCGGATCCTGATT	alt_2582_reverse	18	14	17	17	10	15	14	18	14	16
GTGGCAGCCTTCGATC	alt_2582_reverse	38	33	59	51	38	56	37	39	73	63
TCATTATCCGTCGGGC	alt_2582_reverse	20	8	15	13	17	12	13	12	16	9
GGTTTCTGGAGGTGTG	alt_2582_reverse	39	48	67	51	41	35	41	48	77	40
GGTAAGATACTTGCTT	alt_2582_reverse	20	30	38	18	23	25	34	25	20	25
TCACAGCAAAATTCCG	alt_2582_reverse	2	2	1	1	1	3	3	2	0	1
GTCGTTATCTGACGGG	alt_2582_reverse	52	32	56	46	35	40	26	37	44	46
TGTATACTGGAAAGGA	alt_2582_reverse	11	4	17	13	8	13	12	19	11	10
CTAAGTTAAGGGTTCA	alt_2582_reverse	164	134	174	152	162	161	128	130	147	136
CTGGTCGACTGTTCTA	alt_2582_reverse	7	14	6	5	21	9	19	7	16	7
TCTTCATACATTGCTG	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
GAAATAAGTTAGTACG	alt_2582_reverse	10	14	10	10	12	13	10	17	13	11
TACTTGGTTTTTTACC	alt_2582_reverse	15	12	12	14	17	11	8	13	15	17
TGTTGATATTCAATCA	alt_2582_reverse	80	67	93	74	53	73	72	58	99	70
GCGCTATGGCCACCGA	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCCCCCCGGAAT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CGTTATGTGTCCTTAG	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TTGATCCATAGTATGT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TAAACGCAACTTCGCT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TACGTGCCTCCGTCCC	alt_2582_reverse	162	96	173	170	170	158	148	140	181	145
TATTTAATCTGTCATG	alt_2582_reverse	40	47	50	49	47	44	43	38	50	50
TAACTTGAATAGTACT	alt_2582_reverse	25	27	40	27	29	25	30	17	26	30
CAAGTAACAGGCGCGC	alt_2582_reverse	53	51	67	47	44	52	49	49	54	33
CCACTTTCCGCACACC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TATTATAATGCAGTAT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CATTCTGACAGCTGGT	alt_2582_reverse	9	5	6	4	4	10	1	8	6	2
ATGGTTCGTGTGGCCA	alt_2582_reverse	7	10	12	8	7	5	8	4	18	3
GGAGCCTGTTAAGATA	alt_2582_reverse	18	26	14	21	11	28	16	15	25	25
CTCCTTTACACTCGTT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CGCAATCCGGCTTGCC	alt_2582_reverse	19	53	33	18	63	26	49	28	79	24
AAATTGCTTCTGCGGA	alt_2582_reverse	12	13	14	17	13	19	21	15	10	10
GGCACGGATTATTGAC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CCCGAGTTTCACCGAG	alt_2582_reverse	37	26	38	42	24	28	36	25	32	11
AATATCTCAGTCTACC	alt_2582_reverse	87	114	131	67	100	68	109	70	90	51
ATTCAAAGTTTTTTTT	alt_2582_reverse	45	56	52	52	64	60	48	58	50	48
GGGTTCTGTATTGTTC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCGCGCTCGGTGC	alt_2582_reverse	5	23	7	15	30	8	28	14	32	2
TCGACGGTTGTTAACC	alt_2582_reverse	60	52	63	63	66	55	76	37	77	45
GTCATGGTCACTTCAT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTTCTAGTTAACG	alt_2582_reverse	14	10	10	20	11	13	23	15	20	12
CGTGTTTACAATACAG	alt_2582_reverse	15	18	17	16	12	10	9	17	16	11
GGCCTCTTAGCGATGT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGGGATTGGGATT	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
AATTTCCCCGGTAGGG	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CTCACAGCCATGCTAT	alt_2582_reverse	12	11	5	5	11	12	9	2	7	11
ATCAGTTTGCCGTCCG	alt_2582_reverse	31	27	26	33	22	35	32	24	36	24
AATATTTGTTACTCAT	alt_2582_reverse	13	26	26	21	18	16	13	12	20	13
GAATCCCCCCAGGTAA	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTTTCGGGGAGG	alt_2582_reverse	82	82	94	73	62	73	73	71	66	65
ATGGTTAAATAAGGCC	alt_2582_reverse	14	14	11	7	13	6	14	10	15	6
TTGTCAGAATTGTTAC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTTCGCCCCGTG	alt_2582_reverse	22	31	34	31	23	29	22	21	23	24
TCCTGAATCCCTAAGC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
GTTGACCCCGGTACAT	alt_2582_reverse	35	25	40	35	29	33	31	27	37	29
CAAGGCTACGCTCATC	alt_2582_reverse	1	0	0	0	0	0	2	0	0	0
TTCTCCCGTTGGTTTC	alt_2582_reverse	0	0	0	0	0	0	0	0	0	0
TGGCATCTCCTTCTAG	alt_5671_new	15	9	18	20	13	22	16	21	8	14
TTGTAATCAAGTTAAA	alt_5671_new	29	15	27	21	17	22	17	21	19	21
TATAGGGACCCACGAT	alt_5671_new	0	0	0	0	0	0	0	0	0	0
TTCTTTTCGTCAGCTA	alt_5671_new	0	0	0	0	0	0	0	0	0	0
CTATGTATTAATTTTC	alt_5671_new	215	140	274	284	140	254	159	227	156	206
CGTGTCCAATAGCCTA	alt_5671_new	7	9	22	7	3	10	4	9	3	7
ACGGGTGCGCACATTA	alt_5671_new	2	0	0	0	1	0	2	0	2	2
ACAGGACATGATCGCG	alt_5671_new	0	0	0	0	0	0	0	0	0	0
TGGTCCGATAATTGCG	alt_5671_new	80	40	70	60	35	63	46	51	50	52
TCTCCGTCTGTTGGTA	alt_5671_new	0	9	1	2	6	3	4	2	6	3
TGCTTGGCTCGTGCCC	alt_5671_new	23	21	36	38	21	31	26	20	18	20
ATTATTGATCGCCCTA	alt_5671_new	129	73	136	122	71	121	72	133	85	124
GTCTCGGATTTTGACA	alt_5671_new	46	30	36	40	17	45	28	40	37	28
TAGCTAAAAAGATCCG	alt_5671_new	6	6	14	4	8	11	7	6	3	16
ACTCCTCTTGCGAGGT	alt_5671_new	0	1	0	1	1	2	1	2	0	1
TGTCCCCTTCGTAGCA	alt_5671_new	74	74	128	86	95	101	74	92	75	81
TTCTTTTCGTCATCCT	alt_5671_new	12	10	18	21	18	17	11	7	17	14
GCCCCGTTAATGAAGC	alt_5671_new	101	63	105	86	63	98	70	70	66	95
TCAAAAGTGTGTGCTC	alt_5671_new	57	37	65	69	41	76	54	67	46	72
CCCGGGCTAGTACGCC	alt_5671_new	90	73	101	117	84	101	90	103	75	89
ATTATTTTTTACTCGT	alt_5671_new	154	111	188	155	108	143	111	156	105	137
GCATTATGATTCTTGA	alt_5671_new	26	11	30	27	19	20	21	17	21	26
GCCGGTTACGCTCTAA	alt_5671_new	37	19	40	40	18	31	19	29	28	29
CAAATTTACCCACTTA	alt_5671_new	1	34	5	4	38	5	39	2	43	3
CCGTTCGTTACCTTAA	alt_5671_new	9	18	19	17	16	12	19	16	22	11
CAGCACAAACCGTAAA	ref_5671_new	0	0	0	0	0	0	0	0	0	0
GTTAGTTCCTCTAAAT	alt_5671_new	173	89	215	190	122	140	114	124	121	160
GACATAGCGAAGGTCT	alt_5671_new	76	42	89	73	45	65	54	58	56	62
TCAGCGTATCGTGGTC	alt_5671_new	6	3	5	12	4	7	1	1	8	2
GCATGCTTGCTGCTCC	alt_3359_fdr	4	3	5	3	7	5	8	4	5	2
AGCCGGTCTATTTTCA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TTTCAGTCAGTTGTCG	alt_3359_fdr	13	27	22	19	26	22	26	20	36	14
ATGCTTCAGATGTCAC	alt_3359_fdr	3	5	8	1	5	4	9	4	9	6
GCTCGTTCACTCCAAA	alt_3359_fdr	6	5	4	1	9	4	7	6	5	2
AATCTCGTTGGGTTCC	alt_3359_fdr	14	10	13	8	11	13	7	14	13	7
GCCAATCTATCTACAT	alt_3359_fdr	4	5	6	5	5	7	8	5	5	2
CCTTTCAGTATTCGTG	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TTGACTACGATAGGTA	alt_3359_fdr	110	135	137	122	159	126	187	88	180	99
TCCGCCCTTTCGCCAA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TGTGGTACTACAGCTC	alt_3359_fdr	60	77	60	51	64	50	53	53	66	47
GCGGGTTTAATGTTGA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAGATCCTATCGG	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGCGGAACGCGGA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
AAGACTCTTATAATCC	alt_3359_fdr	3	3	2	1	4	0	5	3	6	1
CTCTCCCGTGCAACTC	alt_3359_fdr	2	6	7	5	6	11	7	2	8	5
TACCTCCCGCTTAGAT	alt_3359_fdr	3	59	4	4	51	6	59	3	60	5
AACTCAATATAGGTTT	alt_3359_fdr	37	55	47	34	49	49	54	36	79	55
TTAGTTGGGATTTTTC	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
ACTTACTCTCCCTGCT	alt_3359_fdr	5	32	12	6	39	8	52	9	41	4
TATCTAAGGAGGGTAA	alt_3359_fdr	10	16	23	16	22	10	20	11	28	11
TTTTCGTTGGGAAATG	alt_3359_fdr	31	56	47	41	51	44	52	57	61	35
GACATCTATACTGTCG	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
CTCATCCGGGCTACTG	alt_3359_fdr	22	16	14	15	7	23	19	20	11	10
AGTCCCCGTTTTACTA	alt_3359_fdr	44	44	51	40	53	37	71	35	58	43
CTGGCGCCCGGGAGTT	alt_3359_fdr	9	19	18	10	17	9	14	10	19	13
TGAAAACGCCGCCTTG	alt_3359_fdr	47	44	56	39	55	35	57	37	47	32
GTGGGCTGTTAGTGAG	alt_3359_fdr	31	69	59	40	46	39	62	47	64	39
GCAAGCTAAGCATTGT	alt_3359_fdr	55	84	63	51	87	49	77	62	63	52
GCCGTGTCCACTCTGT	alt_3359_fdr	11	7	13	5	6	2	13	7	12	7
ACGGTTATTGATGTAC	alt_3359_fdr	122	134	160	133	149	130	170	122	149	116
ATCGGATTACGGAAAA	alt_3359_fdr	2	4	2	0	4	5	2	4	5	4
TATATGTGTGAAACCC	alt_3359_fdr	194	264	237	203	295	197	290	188	321	217
CATCGCCTGTAGTTGA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
GTACGTAGCGAGTTGG	alt_3359_fdr	76	89	91	94	95	86	112	67	88	81
TAGACTAAGCGATCTA	alt_3359_fdr	109	131	122	90	149	101	135	73	109	98
GTTATAAACTGGTGAC	alt_3359_fdr	17	22	13	10	20	16	22	9	28	17
ACCATACCGCTGTACG	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGAGCGGCCATCG	alt_3359_fdr	252	273	283	246	305	218	283	258	288	225
GCATGCTTGCCGCTCC	alt_3359_fdr	19	22	18	14	20	18	21	18	27	21
CTTTTGTTGGTGGCAG	alt_3359_fdr	27	53	51	51	51	49	53	37	50	30
GTTGCGTGTATACACC	alt_3359_fdr	6	3	5	3	6	2	4	6	4	0
CATGTTTCGGGTGAAT	alt_3359_fdr	8	10	12	5	11	3	16	6	19	8
GTCTTTACTTCTCTTT	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
CCTCACTTGCTATTCA	alt_3359_fdr	14	24	22	14	17	10	24	10	24	5
ATTCCGCTTGGACTCG	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TCATGGGTATCCTTAG	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
AGTGACGGCGGGGTGG	alt_3359_fdr	22	27	27	13	16	23	18	9	30	20
TGGTCCGGAAACGTCT	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
CTGTAATTGTCCTCGT	alt_3359_fdr	13	16	21	10	27	11	25	15	20	19
AGCTCGCATAAACTTT	alt_3359_fdr	18	13	14	10	11	15	21	10	22	13
AACGTGGCAACATATT	alt_3359_fdr	16	36	20	21	16	14	28	17	32	20
TTTGGTTTAGCAAAAA	ref_3359_fdr	35	41	32	44	36	41	31	35	40	23
TGACTTTCCCCTCGAC	alt_3359_fdr	11	33	11	12	21	14	20	12	14	9
AGTAAAATCTTAGTGC	alt_3359_fdr	18	32	21	17	33	20	31	24	26	16
GGTAAGGGCTGGCCCC	alt_3359_fdr	35	26	41	35	37	25	33	24	37	34
CCGTCGGAGGCGCAGT	alt_3359_fdr	75	81	70	50	92	70	89	44	91	64
CCGATGCGTCACCTGG	alt_3359_fdr	5	35	11	5	43	8	45	9	47	7
ACCGTTCTTCGTGTCG	alt_3359_fdr	3	5	2	4	3	4	9	2	14	3
CTGCGTGCGGTCCAAG	alt_3359_fdr	34	38	45	35	37	26	36	26	42	31
CTTAAGAAGCAATTAG	alt_3359_fdr	12	28	26	14	30	18	21	22	38	23
CTGGCATGGTTAATCA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
GAATTCTTGTTTTCTT	alt_3359_fdr	20	13	21	21	21	17	23	16	19	18
TGCCATGCGTAGTTAG	alt_3359_fdr	16	19	25	30	21	20	25	22	28	21
CTGCCGCAATCGGTAC	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGTCCAATGGCA	alt_3359_fdr	25	45	32	29	36	29	41	28	53	24
ATTACGTTGGTAGCGA	alt_3359_fdr	53	71	67	49	60	55	85	58	83	45
CATTAGCGGGGATTCA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TCGTATGCGTTACAAT	alt_3359_fdr	140	211	188	158	215	133	235	132	225	136
CTTTCGAGTGTGAATG	alt_3359_fdr	31	18	27	26	28	23	29	21	17	18
TCCAACATTTAAGCTA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
ACATAATCCGTGTCAT	alt_3359_fdr	50	74	66	74	73	82	78	42	86	65
TGCTGTGTCATATAAT	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAACAATGTCTTG	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCACGACTAACAC	alt_3359_fdr	4	1	2	1	2	1	1	1	4	1
AGTTGGTTCGCGAGGA	alt_3359_fdr	56	60	60	41	49	49	71	48	65	45
TTCTAACCCCCTGTTT	alt_3359_fdr	25	16	16	21	20	15	14	5	20	19
ATCATGCAACTGCGCT	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TGATATTGCCCGTACC	alt_3359_fdr	65	85	77	54	82	63	78	71	82	58
TAAGGTTCTTTTCGTA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
GGTGCGTGCCGGGATA	alt_3359_fdr	70	108	101	90	113	84	120	73	133	73
CTGTGTCCCTTCCACG	alt_3359_fdr	15	25	16	13	23	9	39	13	27	17
CCATAGTTTAAATGCC	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TATGCGTAACACTATT	alt_3359_fdr	5	7	3	4	8	7	9	6	8	5
GCTGAATTTCATGCTG	alt_3359_fdr	13	6	14	16	25	8	22	10	15	7
CCACTAAAACACCTTC	alt_3359_fdr	41	81	35	36	78	27	84	29	70	27
CGTCACGGAGTCATCT	alt_3359_fdr	83	59	97	60	55	82	71	71	87	76
CGTTTGTTTGTTCTGT	alt_3359_fdr	6	10	12	5	11	5	7	4	6	6
ATCTGTCCTGTGTGGT	alt_3359_fdr	5	17	7	7	12	8	9	5	9	3
GCCAAATCAGCATGTG	alt_3359_fdr	62	62	56	45	70	38	68	42	68	45
CCGAACTTGTCCTCTT	alt_3359_fdr	2	15	12	9	8	11	11	9	4	8
CACCCTTTTGCGGCGA	alt_3359_fdr	23	43	32	25	23	31	23	23	23	27
CCTATGTAAACTTTAC	alt_3359_fdr	3	6	2	2	3	1	6	2	3	1
GGTTTTCAGGGTCGTT	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGTCGGACGGTAT	alt_3359_fdr	22	37	16	22	32	23	29	18	26	22
ACAGTGTTCCCTATCG	alt_3359_fdr	15	9	16	7	12	14	13	6	11	12
TCTCACCGACTTCTTG	alt_3359_fdr	13	27	15	11	35	21	17	13	20	10
GTGACCCGTCTCTGAA	alt_3359_fdr	23	20	30	20	37	27	12	22	33	10
CATGCGTGGGTCGTGA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGCGACCCAGTAT	alt_3359_fdr	190	237	274	193	266	222	292	189	274	182
GTTACAGGTCGTTAAA	alt_3359_fdr	3	17	9	5	15	4	12	7	11	3
TATATGTGTGAACCCC	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGCGTCTCAACGA	alt_3359_fdr	0	0	0	0	0	0	0	0	0	0
CTGTATCACGCTGAAG	alt_3359_fdr	8	19	22	16	32	14	13	11	16	11
AGCTTAGATTACCAAG	ref_2205_RC	18	19	26	17	18	14	33	16	38	14
TACGCATACGGTTTTG	ref_2205_RC	0	0	0	0	0	0	0	0	0	0
CTTCAGCCTGTAGTCG	ref_2205_RC	8	7	17	8	24	13	7	13	24	10
TCGAAGAAGAGACACA	ref_2205_RC	21	9	25	17	12	25	14	12	10	20
TATTAAAGTCGTTTAA	ref_2205_RC	142	125	186	149	95	134	114	133	113	121
TAAGTATTTGCTTCCA	ref_2205_RC	41	28	44	40	36	38	23	38	22	35
TTGACTTTTGGTCTGA	ref_2205_RC	12	12	9	27	11	12	4	13	15	15
GTCTACTCCTATTTTA	ref_2205_RC	0	0	0	0	0	0	0	0	0	0
GATCCCGATGGCGCAT	ref_2205_RC	17	15	28	21	11	16	18	9	19	15
ATTAATCGTCAGCTCA	ref_2205_RC	44	26	75	41	26	40	40	56	34	59
CACGCCCTCACCATTT	ref_2205_RC	27	24	37	22	29	29	30	23	39	36
GCCCCGCCTAGATCAC	ref_2205_RC	129	117	189	149	105	146	91	146	83	131
AAGCTGTACGGGCTGT	ref_2205_RC	0	0	0	0	0	0	0	0	0	0
ACAGAGTATCGTTTAT	ref_2205_RC	13	10	20	10	14	6	9	5	13	8
TTTCGGAATTAATGGA	ref_2205_RC	54	14	54	52	25	35	25	45	21	32
TTTTAAATTCAATTCT	ref_2205_RC	359	244	441	379	241	354	244	360	257	335
AATATTCCATCCTTCA	ref_2205_RC	30	19	26	22	17	19	20	21	15	21
GAAATACCTGGCTCCC	ref_2205_RC	6	6	8	12	8	7	9	5	7	9
TAGGATTACGCAGAGC	ref_2205_RC	10	9	8	10	9	11	12	10	10	10
GTGCCTTGTGTTCTAG	ref_2205_RC	0	0	0	0	0	0	0	0	0	0
GCCCCTGTCGCGTAGC	ref_2205_RC	26	31	37	12	10	18	19	20	14	17
TTTATAGGTACTCCCA	ref_2205_RC	13	21	23	15	16	12	19	11	31	17
ATTAAGATTTCCGTCA	ref_2205_RC	0	0	0	0	0	0	0	0	0	0
CGTTTGTAAGCCAACC	ref_2205_RC	17	7	16	12	11	5	13	22	9	16
AGTCCAAGTATTCTTT	ref_2205_RC	0	0	0	0	0	0	0	0	0	0
TGAGACTAGATTGTGG	ref_2205_RC	156	153	223	186	135	173	158	144	162	148
GTGGCCAGGTGGAATA	ref_2205_RC	20	12	15	15	13	20	12	22	11	22
GACTGGTTTAGTTTCT	ref_2205_RC	376	254	503	395	272	342	292	337	309	318
AAATTTATATTTACAC	ref_2205_RC	105	76	118	145	63	118	84	103	80	102
TAGAGATATGCGTAGA	ref_2205_RC	113	71	137	135	70	112	117	96	90	91
ATATTATGTATCTTCC	ref_2205_RC	21	13	21	22	17	17	23	19	11	20
GTGGCTACGGGGTAAA	ref_2205_RC	24	6	21	23	21	27	15	22	14	18
GACTCTGTCATTCAGT	ref_2205_RC	0	0	0	0	0	0	0	0	0	0
TGGTAACAGCAAGTTA	ref_2205_RC	2	3	2	1	0	7	1	2	1	1
CCTCGAACTTCAGAGT	alt_5918_new	7	17	22	9	11	5	11	13	16	12
TATTACTGTCAAAACC	alt_5918_new	8	12	9	6	15	9	15	10	19	7
ACACGGTGTTCTTTAG	alt_5918_new	0	0	0	0	0	0	0	0	0	0
GGCTGTGTATGATTTA	alt_5918_new	13	30	19	16	18	16	38	16	26	12
GCCGGGCGTGATCAAA	alt_5918_new	42	39	47	54	37	42	55	44	54	38
GATACGCGGATGAGCA	alt_5918_new	36	27	35	29	40	24	43	27	36	39
TGTCCTATAGTCTTGG	alt_5918_new	26	41	36	27	49	21	38	29	45	29
GTTACTTTAGGTACGT	alt_5918_new	2	7	2	0	5	4	10	4	7	2
GTAACTCGGCCTGTAG	alt_5918_new	18	31	34	32	33	25	31	18	38	26
CATTCCACGTCGTATT	alt_5918_new	31	39	15	22	40	26	40	32	38	12
TAGTATTCCCCGACAC	alt_5918_new	0	0	0	0	0	0	0	0	0	0
ACCTAGGGACTCTTAT	alt_5918_new	9	7	9	8	22	3	9	8	11	9
CCATGGGCTGCTATAG	alt_5918_new	3	11	13	8	19	8	17	9	26	11
CCATGCCTCATGATGT	alt_5918_new	2	28	9	7	20	4	39	3	18	2
AACTAATCCCGAGACG	alt_5918_new	13	23	22	8	25	14	21	12	31	14
TCACTGGTTGCGTAAA	alt_5918_new	0	0	0	0	0	0	0	0	0	0
TGGGACATGAGCTGGT	alt_5918_new	31	44	44	35	57	35	39	28	36	24
TTGCTCCTAAGCAATG	alt_5918_new	21	32	34	27	46	30	36	18	31	27
TGGAGACTGATTTCGG	alt_5918_new	14	10	15	13	13	9	8	9	19	17
CCATTTAATCTCATCC	alt_5918_new	0	0	0	0	0	0	0	0	0	0
TGGTAGCAAATCTGAG	alt_5918_new	64	45	60	39	52	32	40	51	49	28
TACCCCGTTTGCATAA	alt_5918_new	0	0	0	0	0	0	0	0	0	0
GTACAGCTGAATGTGG	alt_5918_new	11	11	10	17	10	3	10	10	18	11
GTATCCGCGGGCTTGC	alt_5918_new	16	24	19	16	16	16	20	15	34	12
AAGTGATCTAGATCAG	alt_5918_new	28	43	46	38	43	37	49	20	49	30
TCGGTAGTTCAGTCCT	alt_5918_new	2	2	3	2	1	0	4	3	0	5
GTACCCGTTCCATGCG	alt_5918_new	0	0	0	0	0	0	0	0	0	0
ATAGCTGCTTGCAGAG	alt_5918_new	46	56	59	63	45	40	55	36	72	33
CTGCTACCTTACGACG	alt_5918_new	2	6	2	2	1	1	1	2	6	2
TTGCACACCGATTTGA	alt_5918_new	6	13	6	10	22	3	14	7	12	4
CGCGTCCCATCCCGGC	alt_5918_new	4	9	3	3	2	3	7	1	3	2
AGTCAAAGTTCTCGCT	alt_5918_new	0	0	0	0	0	0	0	0	0	0
ATGGGATACTAAAGAC	alt_5918_new	62	85	75	71	88	69	73	50	85	67
CCGTGGCGCTTATTAC	alt_5918_new	22	36	23	16	31	17	51	12	55	24
ATATTTGGTCTGCACG	alt_5918_new	11	7	5	5	10	5	6	2	6	2
CTTTTTGCATGACCTC	alt_5918_new	4	5	7	9	4	4	5	3	7	3
ACAGCAGTGGCCGCCA	alt_5918_new	0	0	0	0	0	0	0	0	0	0
AGCATATCTGTTCAGT	alt_5918_new	52	69	70	60	65	40	93	42	99	51
ATACCATTCCCATCCC	alt_5918_new	97	106	158	119	116	106	124	73	126	92
TTCTTGTGTCAGTCGT	alt_5918_new	36	49	30	32	55	25	51	29	67	20
CGGCTTTCGAAACAAT	alt_5918_new	21	36	34	45	58	19	49	19	43	26
AGGACGAAGGGGCGCT	alt_5918_new	8	15	16	12	14	7	16	8	12	7
GGAGGTATAAGGAATT	alt_5918_new	61	53	59	46	46	39	49	37	47	32
CGGGCCCCATCGCCTC	alt_5918_new	0	0	0	0	0	0	0	0	0	0
AGTCGTGAACCCCGGT	alt_5918_new	82	79	81	63	93	75	79	83	95	71
TACACGGGGCCTGGAT	alt_5918_new	4	12	9	5	6	3	13	3	6	5
ATCACCATGCATGTTG	alt_5918_new	31	43	38	45	45	33	52	31	54	38
ATTGCACTGCCTAATG	alt_6016_new	3	4	10	7	5	1	5	3	6	3
CATACGATTTGGAGCT	alt_6016_new	13	25	25	20	26	21	37	21	35	23
TTGGGCAGACGCAGCT	alt_6016_new	73	112	87	74	95	83	95	67	131	59
GTGCGAGGTCACACCC	alt_6016_new	0	0	0	0	0	0	1	0	0	0
CCCGATAGCTCCATCA	alt_6016_new	106	123	106	74	134	76	130	87	147	90
GATGCTAGTTACCCGG	alt_6016_new	8	13	16	14	12	9	9	11	22	10
CTCTCTCTCGACAGCC	alt_6016_new	15	10	11	13	27	18	15	14	20	11
TATAAGGATCCTTGGC	alt_6016_new	26	33	40	22	39	47	37	16	41	15
CTCGTCGTAAATGGCT	alt_6016_new	26	34	17	32	27	26	27	15	38	18
AAAGGCGCAGCGTCTC	alt_6016_new	4	6	3	8	8	4	5	2	5	4
TCGAACCTGGAACGTA	alt_6016_new	21	32	21	24	33	14	22	13	35	10
TCTCTCTATGTACCAT	alt_6016_new	19	19	20	17	23	16	31	19	24	15
CATGCTGTCTTGAATC	alt_6016_new	17	19	20	17	25	18	14	19	13	12
ACTACCGTTTATCGCG	alt_6016_new	0	0	0	0	0	0	0	0	0	0
CGGGATCGCTTCGACG	alt_6016_new	15	52	26	11	34	11	41	10	42	12
GCTTTCGATACCCGTC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
GGACTCCCGTCTTGAG	alt_6016_new	8	19	17	4	24	9	29	5	34	10
CGGCGTCTTTTTTAGT	alt_6016_new	22	30	37	28	26	23	20	15	24	24
CAAGACGTGCAGGGGC	alt_6016_new	10	8	15	12	14	11	11	15	15	10
GTAGCTTCGAAAGATA	alt_6016_new	6	16	2	10	7	2	12	4	8	9
GCGCAAGTCAACGTTA	alt_6016_new	10	23	5	11	27	14	26	7	22	8
CGCTTTCGGGTCTATG	alt_6016_new	15	37	36	30	44	21	25	29	50	23
TGTATTAGCTTCTTGA	alt_6016_new	0	2	0	4	2	0	1	0	1	2
GATGAAACATCTAATT	alt_6016_new	117	131	121	114	115	107	111	105	142	87
TTGCCTCAGGTCGATA	alt_6016_new	31	48	50	30	62	31	57	33	47	30
CTTTCGAAGCGAAACT	alt_6016_new	32	37	33	30	29	23	53	35	50	23
AATTAGAGCCCTGCCC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TCACGACCATTTCATC	alt_6016_new	8	10	4	7	2	12	10	4	11	2
GGCTTCTTGAGTTTGT	alt_6016_new	25	59	31	28	62	31	41	29	49	17
CGTCATCTCTTTGTCT	alt_6016_new	12	24	25	17	15	20	22	12	18	20
TTTAGGGTGAACGTGC	alt_6016_new	8	6	8	8	10	3	7	7	2	6
AGATATTTATCGGTCT	alt_6016_new	21	39	14	12	17	21	25	14	21	22
GTCAGTTGACACTGGT	alt_6016_new	0	0	0	0	1	1	1	1	1	0
GGATTTTCAGGCTCCG	alt_6016_new	16	37	29	23	38	17	30	26	32	14
CGTCTACAACATCACT	alt_6016_new	0	0	0	0	0	0	0	0	0	0
ATTCTGTATCAAAAGG	alt_6016_new	0	0	0	0	0	0	0	0	0	0
GTTCGCGAGACGGTCC	alt_6016_new	8	8	8	12	6	9	20	9	15	6
TCGAATTCAGAGCACG	alt_6016_new	89	100	108	90	108	84	122	90	149	69
TTGGGTCTTGAAGTCA	alt_6016_new	0	0	0	0	0	0	0	0	0	0
GGTATACCTTACATTA	alt_6016_new	0	0	0	0	0	0	0	0	0	0
CCCCTTGTGATTGGCA	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TTGGCATGGCTTCGTG	alt_6016_new	0	0	0	0	0	0	0	0	0	0
CCTTGTGTTCGTTATC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
CTCCAGTTCATCAGTC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TCTTGGTTGATGACTG	alt_6016_new	14	9	8	8	17	8	12	9	19	15
TAATGTAGCATTCAAT	alt_6016_new	25	33	28	30	24	33	37	18	21	26
TCTTGCGATCGGCAGG	alt_6016_new	29	65	64	40	64	49	64	50	72	32
AATTAACTTCACCGAC	alt_6016_new	24	31	35	19	25	16	48	30	22	18
TCCGGGGCTTAGTTTT	alt_6016_new	21	33	38	30	30	22	35	16	38	25
GGAGGGCGCCTTTAAA	alt_6016_new	0	0	0	0	0	0	0	0	0	0
CAGGGGGAAACGCCCG	alt_6016_new	48	63	61	58	79	49	92	52	65	35
CTTGTTTCTAGGGGCC	alt_6016_new	54	41	44	49	53	20	56	49	59	37
CGGTCTCGCCGAATTT	alt_6016_new	5	0	6	5	3	3	5	4	6	2
GTTTGTCAGCCGGAAC	alt_6016_new	9	14	10	11	14	10	13	9	22	12
TACACACTCGAGGCCC	alt_6016_new	14	40	23	14	29	9	38	14	29	10
GTGGTGCTCGGATGAG	alt_6016_new	6	13	8	1	12	2	9	7	9	9
ACTCAAAACCTCGAAG	alt_6016_new	11	16	6	9	13	9	12	16	16	11
TCAATTGTATCGCCGG	alt_6016_new	102	107	128	97	125	93	113	116	115	85
GCGGGTTCTCGGGCTT	alt_6016_new	4	3	3	1	1	6	3	8	6	3
CCGCTAGTCTGAGTTG	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TGAGTTTGTTTTGGCC	alt_6016_new	70	84	86	51	77	62	75	62	78	68
CGCATTCGGTGAGCCC	alt_6016_new	15	26	14	23	20	3	16	10	16	5
GCGCTGGAGAGGAGCT	alt_6016_new	34	25	23	34	22	20	28	23	31	30
CCACGCTCCGCTCTGC	alt_6016_new	6	9	6	5	12	3	6	11	8	3
TACGTTTCGTCGTCAT	alt_6016_new	0	0	0	0	0	0	0	0	0	0
AACTTAGTTTTGCCCG	alt_6016_new	86	106	103	84	107	91	99	71	125	75
ACGCTTGAAGTGAGGA	alt_6016_new	37	30	40	38	38	28	53	19	42	38
TCGTCCTGTGGCTCAA	alt_6016_new	39	62	53	56	67	50	62	41	63	35
GGCCGGGGGACGAGTA	alt_6016_new	11	13	13	7	8	10	12	15	19	11
GGATTAGAATTGCCCT	alt_6016_new	11	6	10	5	9	13	9	9	15	7
ATACTCTCTGTTCCTC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
GGGCTGAGTCTGCACT	alt_6016_new	13	14	10	14	10	11	11	6	12	7
CACTTGTGTTGTTGTG	alt_6016_new	27	38	28	34	49	34	54	36	62	27
CCGTTTAGTTTCCGTA	alt_6016_new	20	47	23	27	23	17	28	28	46	27
TTGGCGCATCTAGATA	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TCAAATGCCAATCAGT	alt_6016_new	12	16	25	14	18	18	23	14	37	13
GGGCCTCCTAATGTTC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
GGGACTACTGAGCTGG	alt_6016_new	97	130	117	116	147	113	161	110	144	89
AACGATTATAATTGCT	alt_6016_new	4	11	7	14	14	7	8	8	11	12
ACCTTAGCGTCCATCC	alt_6016_new	0	2	0	0	0	1	3	6	4	1
CTGCAGGTGAACTGTT	alt_6016_new	9	13	9	8	16	11	11	10	12	16
CGAATCACGGATCTAG	alt_6016_new	132	135	157	140	205	132	180	135	201	115
GCTTATTCATGTAGTA	alt_6016_new	9	16	20	11	12	8	13	15	15	15
TTCCAGCCGGCCTTGC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
TGGGAGGGCCTAAGGC	alt_6016_new	0	0	0	0	0	0	0	0	0	1
GACCTTGTTGTCGGAC	alt_6016_new	8	25	7	9	14	9	14	7	25	13
GGAACGTCATTACCGC	alt_6016_new	0	0	0	0	0	0	0	0	0	0
CTTGTGCGTGGTTTTC	alt_6016_new	18	29	22	13	37	18	30	29	25	18
TCTAACATCCGCGCAG	alt_5883_new	91	161	110	78	141	76	149	74	158	82
CACGGCGATGTCAGGA	alt_5883_new	20	27	21	19	21	16	22	13	34	18
TTTCTCACACAGCTGC	alt_5883_new	28	58	54	48	79	43	90	43	71	37
CCATATTTTCTAGATG	alt_5883_new	0	0	0	0	0	0	0	0	0	0
GTACTTTTGACCTTTT	alt_5883_new	79	136	95	85	131	76	149	48	146	69
GACTTGATGATATGCC	alt_5883_new	0	0	0	0	0	0	0	0	0	0
ACCCTCTGTATAATTC	alt_5883_new	0	0	0	0	0	0	0	0	0	0
CCTTGAAACAGATTAA	alt_5883_new	114	192	177	109	213	127	195	121	208	106
TATTGTATGTGTGTAG	alt_5883_new	1	14	10	4	13	6	13	3	15	3
TGAGAATCTTAGTCTG	alt_5883_new	28	36	28	15	40	21	39	23	64	22
GCCCCAGGACTGTTGC	alt_5883_new	10	16	11	13	15	13	17	6	14	5
TGTGAAGATTTTTAAG	alt_5883_new	13	25	18	5	24	12	26	17	31	15
GGGTGATCAGTTTGGC	alt_5883_new	7	17	16	3	21	11	22	8	32	10
CGGTTAGCCCCCATAG	alt_5883_new	6	8	5	2	12	3	6	6	3	2
TAACACGTTATCGACC	alt_5883_new	33	40	50	24	52	38	56	25	63	23
CTGCACATAGCTTGGA	alt_5883_new	0	0	0	0	0	0	0	0	0	0
CTAATTATCTCAGTTG	alt_5883_new	7	16	14	10	11	3	15	6	9	1
CGTATTGATAGTTCCC	alt_5883_new	32	41	22	12	42	21	47	23	59	18
TAAGGTGTTAGTGAAT	alt_5883_new	12	15	12	6	18	3	23	5	22	10
GTCTAAGGTCGAAGTA	alt_5883_new	34	141	41	31	144	22	151	26	156	24
AGAGGCTCATTTAGAG	alt_5883_new	5	5	2	1	4	3	8	1	2	4
TCTGCCGGAGTCGATC	alt_5883_new	7	6	2	5	4	3	8	2	2	0
TCTCTCATCCATGTAG	alt_5883_new	0	0	0	0	0	0	0	0	0	0
AGCCGCCGTCTCGTAG	alt_5883_new	6	24	9	10	26	9	27	11	20	8
GTTCTCTTTTCGGCCT	alt_5883_new	29	26	27	27	29	21	20	26	44	14
TCTGCGGCGGTGTAGT	alt_5883_new	0	0	0	0	0	0	0	0	0	0
TGCTGACGATAGGATT	alt_5883_new	19	20	12	18	14	16	29	16	30	10
CAACATGGCCTTGCAA	alt_5883_new	3	5	8	4	7	3	6	4	8	1
TAAGGGTGGTTCCTCT	alt_5883_new	27	70	55	42	78	33	72	44	66	35
TAGCTAGGGTTTCCTC	alt_5883_new	0	0	0	0	0	0	0	0	0	0
TGTATACTGCGAGAAC	alt_5883_new	0	0	0	0	0	0	0	0	0	0
TTGTGCCCCTATGAGT	alt_5883_new	1	5	5	1	8	5	6	1	6	3
CCTTCTATCGTCAGGG	alt_5883_new	0	0	0	0	0	0	0	0	0	0
TCGTCCGTTATCGAAT	alt_5883_new	13	30	4	24	38	15	42	15	38	9
TCCAGCTGGTACGGCA	alt_5883_new	0	0	0	1	0	0	1	0	1	1
TTGGTTTCCGGGGGGG	alt_5883_new	6	5	5	6	6	5	6	2	5	5
CAACAAGAGGTAGGCA	alt_5883_new	0	0	0	0	0	0	0	0	0	0
TTTAGCAATAAAAGTT	alt_5883_new	3	6	3	2	4	1	8	4	5	1
GTGGCTATGATAGAGA	alt_5883_new	28	59	27	19	49	34	42	24	52	27
AAGGGGAACCCGGTCT	alt_5883_new	2	5	1	0	5	0	5	4	6	1
CCGAGAGTTTTGCGCG	alt_5883_new	0	0	0	0	0	0	0	0	0	0
CCTTCTAAGTGAATAT	alt_5883_new	0	0	0	0	0	0	0	0	0	0
AAGTATTTGTGTAGGT	alt_5883_new	3	15	6	12	10	5	8	8	10	1
AAACTTAGGAATTGAG	alt_5883_new	2	4	1	1	7	0	3	4	11	3
TTCCCGGCGGCTAATA	alt_5883_new	18	11	9	11	25	9	15	11	17	9
CAAACCACGTGATTTA	alt_5883_new	17	32	23	12	25	9	41	9	48	7
TCTCGTAGGAATCTAT	alt_5883_new	0	0	0	0	0	0	0	0	0	0
TGATCTATACCTCCAG	alt_5883_new	0	0	0	0	0	0	0	0	0	0
TCTTAATAGTTGGTGA	alt_5883_new	68	109	73	48	83	57	95	53	118	52
CTTTGTGGATACGCAG	alt_5883_new	58	148	86	76	111	66	122	67	108	55
TCTTCTATAAATGGAC	alt_4507_missing	23	25	11	14	19	9	26	15	20	12
TATATTGCTCCGACTG	alt_4507_missing	3	4	0	0	3	0	4	0	3	0
GGTGGCATCAGCCGGT	alt_4507_missing	22	18	18	22	21	34	28	13	32	18
CGGTTGCGGTACTCTA	alt_4507_missing	1	0	1	0	3	3	2	2	5	2
TCCAGCGAAATTCGTA	alt_4507_missing	3	11	15	12	15	5	16	7	13	8
TTAGTCTTCTTCGGGC	alt_4507_missing	20	27	15	19	42	23	32	17	38	19
CTATCTTAATGGTTAA	alt_4507_missing	9	7	8	10	10	6	11	5	11	6
CAATCAACCTGTCGCT	alt_4507_missing	3	5	3	1	9	3	16	3	10	3
GATATGCGATAGAGGT	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
TCATACATTTGTTTAC	alt_4507_missing	140	149	168	193	169	149	169	143	172	130
GCATTTGTAGTGTTAA	alt_4507_missing	27	28	21	24	41	15	37	23	33	15
TCACGTTACTTAATGT	alt_4507_missing	7	7	8	6	13	6	6	6	6	9
AGCAATACAGGCACCG	alt_4507_missing	51	127	80	67	145	65	128	65	146	62
TAAAATATTTTTCTTG	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
TCGTTGTCGTTCATAT	alt_4507_missing	4	8	7	9	14	3	15	6	16	6
ATGATGCCATGCTATG	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
GGTCTCGAGATTGGAC	alt_4507_missing	9	22	10	12	14	15	26	9	21	14
ACCTGTATCTTTGGGA	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
ATACTTCATTTTGCAG	ref_4507_missing	40	38	33	19	45	46	51	30	48	34
CCACTAAGCCTGGGTA	alt_4507_missing	0	0	2	2	3	1	0	2	3	3
TAGACCCCCTTTAGCT	alt_4507_missing	8	16	9	8	18	6	13	6	8	3
CACATTGCGTTAAGTA	alt_4507_missing	30	29	24	24	37	24	49	17	26	14
CTTTCGACGTCACGGA	alt_4507_missing	6	7	12	4	8	2	8	4	11	8
TGCTGTTCTGTTTGGT	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
TTGCAGAGTTGTTCAG	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
TTAGCTGTCTTTAAAC	alt_4507_missing	3	22	11	8	21	12	13	10	18	8
TCGGTTGGGAGCGACA	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
AGAGGTTCGACGTCAA	alt_4507_missing	11	13	15	8	23	17	32	11	30	12
ACCCTTGATGTTAGGT	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
TTACTCCTCGCTTCGG	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
CGCCGACGGTGGTGAA	alt_4507_missing	12	37	16	17	32	17	26	24	40	23
AGCTGCACATCGACTG	ref_4507_missing	6	15	7	6	14	11	17	4	13	11
AGCAATACAGGCACTG	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
ATCCTCTCACTGTGAC	alt_4507_missing	0	2	0	0	0	2	0	0	4	1
CTTTTCGCCGAACAGC	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
CAGCTCTTCAGGTCAA	ref_4507_missing	17	27	28	6	44	15	44	20	28	17
TACGGATCTGCTCCTC	alt_4507_missing	26	34	26	14	33	19	36	28	38	24
GTTAGAGGCACCTGTG	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
CTCAGAACACATGACC	ref_4507_missing	78	88	80	77	97	88	94	76	102	55
GCCGTTTTGAATCATA	alt_4507_missing	0	1	0	0	2	0	1	0	2	1
GCAAGTGTGCTCTGGA	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
GGATGTCGAGTATATC	alt_4507_missing	26	43	32	17	36	22	30	16	41	22
CCGCGCCTAGCGGTGG	alt_4507_missing	46	106	35	43	129	50	123	28	123	43
CCCTCACTCATGGTCC	alt_4507_missing	2	6	2	1	4	8	3	1	4	3
TCCGGGACAGAGATCC	alt_4507_missing	0	0	0	0	0	0	0	0	0	0
AACTTGTTTTATTATG	alt_4507_missing	6	8	1	7	6	3	9	7	3	4
GTTGGACATCCCTTTT	alt_4507_missing	61	65	85	59	88	52	93	51	91	43
ACAATGAACTATTGCC	ref_1338_upstream	207	189	261	230	193	212	213	182	239	176
ATCTAGGGAAATTAGA	ref_1338_upstream	17	19	15	16	17	20	13	13	15	7
CACAGCGTCGTTATAT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACTGAGAAGCAT	ref_1338_upstream	51	34	63	47	36	39	40	35	27	44
TTATCCACAGATGCCT	ref_1338_upstream	47	48	94	63	59	59	47	53	63	73
TCTCAAAGTCTCTGTT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATTCTGGAAATC	ref_1338_upstream	141	94	127	101	109	129	109	112	110	106
TGCTCGGTCATTCCGT	ref_1338_upstream	65	37	62	64	52	36	39	41	53	39
GGGCTATCTTTATGTT	ref_1338_upstream	152	104	168	122	116	131	106	109	122	115
TATAGGGTCATTGGAA	ref_1338_upstream	5	4	15	6	5	13	8	8	5	4
TTCGTTATGTCCAATT	ref_1338_upstream	63	46	85	72	49	59	36	48	52	62
TTTATATAGATGGTTT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATTGACGATCTA	ref_1338_upstream	23	42	49	32	24	34	23	24	28	37
ATCACTTTGTTGTCGA	ref_1338_upstream	280	231	305	238	241	223	280	241	238	222
CCTGCATATTGATTCA	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAGTATTTATTAT	ref_1338_upstream	75	56	102	53	66	74	74	72	59	82
GTTTGACGGCAACGTA	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TGGATCTGTCTGTGCC	ref_1338_upstream	573	464	658	477	443	518	503	498	547	478
CCAATGCGGAATTCCC	ref_1338_upstream	13	8	7	8	12	10	2	8	7	5
AAGACAGCAGAGCGTT	ref_1338_upstream	5	7	4	10	6	3	2	6	7	12
AAACCCTTGGATGATA	ref_1338_upstream	8	5	18	9	2	16	9	17	8	15
TCTAGATGTAGCGCCA	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TGGTATTATCTCGGGA	ref_1338_upstream	27	19	43	30	23	32	23	27	40	38
ATCCAATGTTAAAGAG	ref_1338_upstream	53	48	73	43	63	49	64	84	60	55
CAATTGTTGGGCCCGG	ref_1338_upstream	98	64	111	71	53	80	49	97	67	80
AGAGCGGCTCTTACGT	ref_1338_upstream	119	122	192	126	134	126	130	133	117	151
CGCCCTAAGGACGGCT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
GGGACATAAAAGTACC	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
GCGATTTAGCGTCTTT	ref_1338_upstream	84	64	81	51	65	82	63	58	71	61
GAATTTGGACTGGCGT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTTTGTGTGCACG	ref_1338_upstream	237	161	243	186	219	181	186	203	213	192
TTTGCAATTGATCTCG	ref_1338_upstream	113	75	156	90	94	106	91	101	104	114
ATGACCGGAACTTGTG	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
CCGGGTTCGAAGGAGG	ref_1338_upstream	186	119	216	159	144	191	109	163	140	151
TTAGTTTCGTTCGAAC	ref_1338_upstream	19	17	11	13	16	8	10	13	14	16
TGCAAATGAACCGCGT	ref_1338_upstream	10	15	23	15	12	22	18	19	16	16
CAGACGCTTAAGAGCG	ref_1338_upstream	44	32	47	39	35	33	42	32	43	25
CTGTACTGATAAATTT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
CTGGATCTCTACCCAT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTAGCGTAACTCT	ref_1338_upstream	49	52	60	48	50	61	61	60	44	57
TGGAACCATATGCTTG	ref_1338_upstream	29	29	41	34	29	24	26	41	27	33
AGGTATTTATCAGATG	ref_1338_upstream	44	24	40	22	19	17	26	18	22	31
TTCTCTTTCCCGCAGA	ref_1338_upstream	45	47	81	65	59	51	62	61	57	55
GCATAGAAGCGGTTGT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTCGGGTACGTTA	ref_1338_upstream	99	74	117	116	84	103	88	116	89	105
CTTTCGAACTAAAAGG	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
AATACATCCCTCTTCG	ref_1338_upstream	11	6	8	9	11	3	9	5	10	6
GAATCTTTTTCGTATT	ref_1338_upstream	68	72	115	62	56	79	58	63	48	78
CTGTCTTTTGCATTCC	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TTATGGTATCCTATAT	ref_1338_upstream	5	8	10	4	2	2	6	5	7	4
TAAGTCAGTGTGCTAG	ref_1338_upstream	58	40	66	49	55	53	44	41	36	46
GTCTAGAACGACGGGT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
AATAACCGTGACTTTG	ref_1338_upstream	13	10	19	10	12	17	9	18	24	15
CCGCGCCTGATTTTTG	ref_1338_upstream	20	21	29	20	10	11	18	8	14	17
GCGATAGCGCGCCCTA	ref_1338_upstream	24	27	54	33	29	29	29	23	26	44
TTCGGGACACGGCGGC	ref_1338_upstream	8	4	13	5	4	6	2	4	10	6
TTGCACATTACCGGCA	ref_1338_upstream	60	33	42	41	40	52	54	43	50	41
GTATGACGAGCCTATT	ref_1338_upstream	29	30	32	29	24	34	22	17	23	18
AAGTCGATTTGTACGG	ref_1338_upstream	81	43	86	59	66	62	53	73	50	66
GATGTGGATCGCCGGT	ref_1338_upstream	137	75	166	119	82	126	96	97	110	107
TTCTCCTGGGCGCTTG	ref_1338_upstream	30	25	26	33	18	23	16	27	20	13
ACTGGCGGGAGTCCTC	ref_1338_upstream	60	71	96	80	51	61	65	80	51	61
CTCGCCATGCACGACT	ref_1338_upstream	98	96	145	103	89	102	88	89	97	81
CTGTGCAGTGCCTTGA	ref_1338_upstream	43	32	26	33	34	37	41	29	34	26
GCTGTATCAGATTATC	ref_1338_upstream	86	65	92	75	59	82	42	78	56	80
TATTGTTAAGGATCCT	ref_1338_upstream	17	15	17	22	24	24	16	9	15	17
TCTCACGCATGTAAGC	ref_1338_upstream	151	89	169	149	120	132	115	119	110	119
TCCGTAACATAGGATC	ref_1338_upstream	6	1	5	2	2	2	0	0	3	3
GGCCGTGACACAGGTA	ref_1338_upstream	121	71	132	94	74	96	99	84	98	94
TTACAAATCTATATTG	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAATCTCCGCAGT	ref_1338_upstream	258	224	326	226	228	246	236	274	232	255
TACGTTCCCACGTTGC	ref_1338_upstream	5	6	3	3	1	7	2	5	3	2
TCACAATCTGTGTTCC	ref_1338_upstream	86	135	133	90	131	108	122	86	114	90
TGGCCGTTTTAGACTT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGACACCCATCTT	ref_1338_upstream	18	5	17	10	18	7	4	7	7	6
TGTCTCCCGGTCATTA	ref_1338_upstream	165	145	159	142	154	143	171	127	175	134
GTCCCGCCCCACAGCG	ref_1338_upstream	24	13	26	9	6	11	18	11	12	19
TTTCATGTGGATTACC	ref_1338_upstream	15	14	29	14	15	20	12	10	15	14
ATCGATGACACCGAAT	ref_1338_upstream	154	114	191	159	138	150	153	132	149	150
GAGGAACTGGTTGTCG	ref_1338_upstream	66	43	68	53	47	58	48	48	39	52
TGGTTGCGTCATCAAC	ref_1338_upstream	101	76	130	87	64	114	66	97	64	112
TTTCTTTCAAGGGTGT	ref_1338_upstream	61	40	66	56	46	65	57	52	49	61
GTATACGGCACTACGT	ref_1338_upstream	191	100	173	115	130	137	117	139	129	151
GATAAGGAACCCCAGC	ref_1338_upstream	195	155	232	183	182	201	159	177	171	184
GCGCTCAACCTTAGTT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TGTATTATCCCCCCAT	ref_1338_upstream	81	34	89	62	34	69	41	65	58	63
TCGCTTAACCGGCATT	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TACCGGCAGTCGCTGA	ref_1338_upstream	51	44	58	48	54	42	43	56	36	55
TACTGCGCGCGCTATA	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGTAGAGTTTTTT	ref_1338_upstream	23	7	16	13	6	11	14	16	11	9
GCCCACAGTTGACATT	ref_1338_upstream	4	4	9	8	3	2	2	5	8	5
CAGGCCCACGCTTCGC	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TAACCGTACGATGTAG	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
TGGCATCTGTACACCT	ref_1338_upstream	21	24	22	18	19	17	25	15	19	27
CTATCCGGATTCTGGT	ref_1338_upstream	14	11	19	11	17	18	14	7	12	18
ATCTACGAGTACGCGC	ref_1338_upstream	0	0	0	0	0	0	0	0	0	0
GAGAATCACGGACTAA	ref_1338_upstream	123	92	131	108	79	126	101	106	103	116
ACGAATTAACGGAAAT	ref_1338_upstream	75	51	100	71	46	71	71	71	69	67
CTACGCGAAGTGTCAC	ref_1338_upstream	33	14	30	20	26	17	19	20	21	30
AATTGGTGGACTAAGG	ref_1338_upstream	37	21	50	20	28	33	27	35	23	19
TGTGTACACCTAGAGG	ref_1338_upstream	40	37	69	31	33	38	38	41	32	39
ATCAACTAAGGAGGGA	ref_1338_upstream	80	53	106	82	54	52	48	62	75	71
TAAGTACTAATGATGG	ref_1338_upstream	0	3	5	4	3	2	4	2	3	1
ATGCGTTCTTTTTTTT	alt_4003_reverse	76	39	91	83	38	65	36	73	40	76
TCAGTAGATAGTTTGA	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGAGTTCCTCGGG	alt_4003_reverse	11	10	12	9	5	5	4	11	0	5
CAACCAGTTGCACATT	alt_4003_reverse	13	3	11	7	5	10	0	13	9	9
TGCTCGAGATCCCTCT	alt_4003_reverse	180	78	254	202	105	181	81	192	93	202
GGTTCCGGGATCTCTG	alt_4003_reverse	179	92	223	209	104	173	95	173	98	176
GTGCAGATGGGACGTC	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
GTGATTACCCTAGCTC	alt_4003_reverse	58	34	89	52	32	61	46	52	44	49
TTGTAATACTCGTCTA	alt_4003_reverse	82	44	122	108	56	94	61	112	66	73
AATGGTAATTGGGCCA	alt_4003_reverse	24	12	42	45	17	35	11	36	17	28
GCCAGGATTTTGCGAA	alt_4003_reverse	569	294	735	638	290	595	280	573	287	542
TCGTCTTGGCACGTTT	alt_4003_reverse	88	27	97	81	37	60	40	86	43	79
AAAATCGCTTTCACGC	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCACATTAAGGGG	alt_4003_reverse	26	28	24	24	16	22	22	28	24	26
TACTGTAATCTGGTGC	alt_4003_reverse	25	17	29	22	13	19	14	36	15	26
CGGTATGCGAGATGGT	alt_4003_reverse	66	51	82	47	42	53	37	85	31	63
TCATCCAAATTTATGC	alt_4003_reverse	74	38	105	103	42	72	32	83	40	80
ATTATCCAGATGTTCT	alt_4003_reverse	224	87	225	230	94	186	92	213	119	172
ACTGAGACGAGGCTCG	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTGGTAGGGAAGC	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
TCTGAGTACCACTGCA	alt_4003_reverse	30	20	34	29	25	28	18	35	16	20
AACTACGTGCCATAAC	alt_4003_reverse	47	38	79	59	38	46	25	59	34	61
GGCCATTGCCGGCCCT	alt_4003_reverse	17	9	7	22	6	11	6	14	7	9
CGTGGGTGATATAGAA	alt_4003_reverse	99	48	146	123	76	88	58	118	60	83
CGACGCCATAATTATC	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGGAACCCCGAAC	alt_4003_reverse	81	35	89	80	26	62	36	60	46	67
GTCTTCATTCACTTTC	alt_4003_reverse	489	209	527	519	226	435	211	463	241	363
GAAGTTTGGAGAGCTT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCCCTGTGGAATT	alt_4003_reverse	71	30	69	75	35	67	37	70	35	79
TTGCCAATAAACGTTA	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCTTCCGGCGTAG	alt_4003_reverse	15	4	35	27	17	16	7	11	11	20
TCTGTAAGTTCTGCAT	alt_4003_reverse	123	70	148	125	50	122	65	102	101	86
ACGTCCTCGCTCTGCT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
TCACCTACATCCCGTC	alt_4003_reverse	59	36	75	61	40	41	46	34	49	40
AATCTTTTATTTGAGG	alt_4003_reverse	136	50	134	108	63	125	79	112	90	106
CGTCAAGGCTGTTTAT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTTCCGTCAGTGT	alt_4003_reverse	226	117	262	242	134	207	147	243	144	198
GTATAGGTGTGTTTGA	alt_4003_reverse	1	0	0	0	1	0	0	0	0	0
ATCTATGCCGTGTAAT	alt_4003_reverse	261	161	335	350	170	286	201	303	188	277
TAGGGGGTCGCGAACA	alt_4003_reverse	41	32	80	77	38	42	35	69	28	53
CATTGGTATGCTTTTC	alt_4003_reverse	191	125	252	232	99	171	120	224	113	145
GTTTCGCAAGGCGCGC	alt_4003_reverse	75	51	102	109	48	67	36	71	39	87
CGTAAATGTCCCGCAT	alt_4003_reverse	102	43	127	113	51	114	50	116	41	87
CCTGTTCCGTCGACAG	alt_4003_reverse	75	39	102	91	52	78	39	77	42	75
GTTATTTTGGGGTATC	alt_4003_reverse	24	23	39	27	18	35	16	39	24	28
CCTATATCGTGGTCGT	alt_4003_reverse	16	11	23	15	3	8	9	16	5	28
CACGAGTTTTATTTCT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
GTCTACTTTAGGCTTT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTATGACTATCCT	alt_4003_reverse	135	56	223	139	97	142	91	144	104	157
CAGGTCTTCTCTCCCG	alt_4003_reverse	159	72	208	190	51	147	62	145	72	119
TTTGACCCCGATCTTT	alt_4003_reverse	126	60	134	139	73	115	79	108	57	107
GTGATTATGATATTAC	alt_4003_reverse	47	16	57	43	20	24	11	37	17	27
TGTACCATTCATTTCT	alt_4003_reverse	4	1	7	3	3	4	2	5	4	10
ATCATCAACCCGCCTC	alt_4003_reverse	28	11	58	31	23	28	20	34	8	33
TACTGAGGCTCGTCAC	alt_4003_reverse	99	45	123	141	62	92	62	106	52	116
CGTTTGTTCCGTGCCA	alt_4003_reverse	190	95	195	180	84	175	80	153	84	146
GGGGTCCCACGGGTTT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCTCGATGTCTTT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
TACTATTAAACGGGGT	alt_4003_reverse	86	30	80	76	43	83	29	82	31	56
CATCCCTCTTGTGTGT	alt_4003_reverse	178	122	242	203	120	208	123	201	137	178
ACTGTTTGAATTCTTC	alt_4003_reverse	7	3	15	15	4	11	5	12	8	13
GCTCGTAGGGCCTTAG	alt_4003_reverse	16	10	24	17	8	9	12	21	13	12
CTTGCGCAACCGTTGC	alt_4003_reverse	149	80	157	121	70	113	75	129	87	95
GTCGTGCCTCCCATCC	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAGAGATCCGGGC	alt_4003_reverse	55	16	71	60	20	46	18	50	21	42
CATCTATACGAACGAT	alt_4003_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCTTCAGGCTCGT	alt_314_RC	27	27	24	11	27	22	39	19	43	19
GGGGTGCAATTGTAAA	alt_314_RC	0	0	0	0	0	0	0	0	0	0
GCTAACTCTAGGTAGG	alt_314_RC	17	30	30	8	16	16	11	18	18	11
AGCCTAATAGGCTTTA	alt_314_RC	98	101	117	93	107	75	127	90	83	96
GCCTGGTCTACCATCA	alt_314_RC	21	47	34	30	32	17	33	31	34	23
ATTCGGCTGAGTACGA	alt_314_RC	0	0	0	0	0	0	0	0	0	0
GTGCAGACAGTGTCTC	alt_314_RC	0	0	0	0	0	0	0	0	0	0
AAGGAGTACCATAAGA	alt_314_RC	18	19	28	25	29	28	19	15	28	17
GCAGCAGGCTATCTCT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
AACCGATGACCATACG	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TGGTTAACTTCACTTT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TTAAACATTGTTGCCG	alt_314_RC	94	82	132	106	78	94	108	96	97	98
CGCTGCTATGATTGCG	alt_314_RC	6	10	9	10	3	2	8	7	9	5
TGTTGACAAATCTGCC	alt_314_RC	285	220	328	305	238	271	233	279	247	233
ATGGCATCAGACTTTG	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TGGCGCCCTGGTGTGC	alt_314_RC	0	0	0	0	0	0	0	0	0	0
CAGGATGTTTCAACCG	alt_314_RC	10	10	12	3	12	5	14	8	15	6
TCCTAAGTTTCATAAT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TTTTGTTTTCAGGGGG	alt_314_RC	22	12	18	22	8	22	19	10	16	13
GTGGGATGCAGGGCAC	ref_314_RC	18	8	18	16	19	11	21	5	19	24
TCCAACTGCAGCATGT	alt_314_RC	60	72	92	64	66	58	80	58	85	56
GAAGCGGCCATTTCAC	alt_314_RC	68	52	93	76	57	68	52	72	59	46
AACGTATGCCGCTGAC	alt_314_RC	51	61	67	52	61	67	47	46	64	54
TTGTTAAATGATGTCT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TTCGTGGCGCGAAGCG	alt_314_RC	17	25	31	29	19	36	38	31	37	20
CGGTACTCAGTGTGTT	alt_314_RC	203	218	207	199	223	174	234	163	268	173
CGCCGCGCATGTTCCA	alt_314_RC	49	55	51	55	29	36	40	38	59	44
GTCAGCCTTTCTGGAT	alt_314_RC	87	86	97	93	80	80	65	91	113	72
CGGTTTATCCTGTCTA	alt_314_RC	112	114	139	115	132	101	113	121	127	93
CAGTCCGCTAGATCTG	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TTCGTTATATTTCTGC	alt_314_RC	62	43	71	57	50	61	56	56	64	40
CAGAGATCTGTGTGTC	alt_314_RC	31	55	66	46	64	57	56	57	59	42
CACTTAGCTTCACATA	alt_314_RC	0	0	0	0	0	0	0	0	0	0
AGCGCAAGTCGTAATA	alt_314_RC	17	12	29	12	13	15	13	19	15	21
TGCAGCTTTCTCCTGG	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TGCAAGATCCATAAGT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TCGTGCAGTAGCGCTT	alt_314_RC	4	10	8	2	3	4	5	4	9	2
TCAACCGCTCGCATGC	alt_314_RC	18	44	32	20	37	17	35	22	41	17
ATGGTCATGGAGATTT	alt_314_RC	8	6	9	9	13	9	9	8	8	6
ACGATAACCCCGGGTT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
TTGACTCAAATTGCGG	alt_314_RC	67	73	64	64	64	68	52	79	67	65
GCCGGCCGAGCCTAGC	alt_314_RC	51	59	46	45	59	40	48	40	55	40
CCATGTTCGCTTCTAT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
CATGGAGATTATTCTT	alt_314_RC	226	170	258	220	202	214	188	179	180	215
CGCTAGCATAGAACGC	alt_314_RC	8	8	16	13	3	11	9	12	7	5
GGAATGCCTGTTGTCT	alt_314_RC	0	0	0	0	0	0	0	0	0	0
ATAGCCCAACTTCTCA	alt_314_RC	90	81	115	84	89	88	103	88	115	87
CAAATAAGACAACCTG	alt_314_RC	45	63	84	57	51	64	75	52	53	57
ATTTGGTAGTATTTAC	alt_314_RC	0	0	0	0	0	0	0	0	0	0
CAGATCGCTATTTAGG	alt_314_RC	37	32	56	46	45	34	40	25	32	34
CGGGCCTGCGGGGCAC	alt_314_RC	154	137	179	173	149	134	163	150	161	157
ACCATTCCATAATTCC	alt_314_RC	26	19	31	22	18	22	25	29	26	24
TTCAACTGTGCGTCCG	alt_314_RC	9	17	12	17	19	14	27	12	22	14
CGCAAATCGCAATTGC	ref_5874_new	15	24	20	24	25	10	27	17	26	17
TGCGCTAGCGTAGTTA	ref_5874_new	52	79	61	37	82	56	94	58	94	48
CTGGGTACAAAATAGG	ref_5874_new	26	51	43	37	66	44	59	38	57	30
CGTCGGGCTCGGAATC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
GCCCGGTGTTTGCGTG	ref_5874_new	42	75	55	47	67	44	84	45	83	33
CTCTTACCGGGACGCG	ref_5874_new	31	56	37	24	41	29	37	27	56	29
TGACACGCCGCGCAGG	ref_5874_new	0	0	0	0	0	0	0	0	0	0
TTTGCTGTGGGCCCGT	ref_5874_new	23	28	36	36	43	20	36	24	37	29
GCCTGCAAACCCTTTA	ref_5874_new	22	21	22	10	9	17	22	15	27	9
ATTTGTTTGTCAGTCC	ref_5874_new	3	12	4	8	8	2	12	7	19	9
TCGATGTGTTCTAATG	ref_5874_new	11	26	20	11	16	27	18	10	22	13
TCGGTGTATTTTGCCG	ref_5874_new	15	15	11	13	16	14	20	11	18	8
CAAGCAACAGAAGGGC	ref_5874_new	73	103	77	78	102	78	102	75	125	56
CTAGGGCCGTTACTGA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
CAAGTCGTAGTACTTA	ref_5874_new	16	25	13	16	14	10	30	14	11	10
GCTGCGTCCATAGTTG	ref_5874_new	0	0	0	0	0	0	0	0	0	0
ATGGTTTAACCCGTGA	ref_5874_new	2	1	1	5	3	2	2	0	3	1
TTTCTCAGTTTTGCTT	ref_5874_new	6	26	13	14	22	18	15	8	31	16
TATCGTGGCTAGAAGA	ref_5874_new	61	76	60	59	63	42	88	38	88	29
TGCCGAGCGGTACGTC	ref_5874_new	32	51	41	19	35	33	54	34	52	34
TAATTAATTGTTTCTA	ref_5874_new	76	104	71	61	75	55	100	72	93	59
CATACGTAATGACTCT	ref_5874_new	0	0	0	0	0	0	0	0	0	0
GTTTTGCCCGCAGTCC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
TCCCGTTTCATGACCC	ref_5874_new	25	47	30	37	54	36	52	27	40	36
CCCTAGTTAAGCAGCT	ref_5874_new	22	30	36	36	47	28	37	25	34	21
CGCTTTGCTATTGGGC	ref_5874_new	10	22	18	14	21	16	15	7	15	9
TTATTGTTCCCGTACA	ref_5874_new	9	10	5	8	15	4	15	5	16	8
GGATGATTCGAGGGAA	ref_5874_new	49	68	74	48	69	52	71	56	86	44
ATTGTGGTTCTATTTC	ref_5874_new	33	34	48	34	34	22	34	31	34	21
GCCTCTCAATGGTCTG	ref_5874_new	282	466	301	289	523	279	510	266	558	262
GAGTGCGTCGTAGTTC	ref_5874_new	44	49	40	32	49	35	54	37	44	29
TATCCTGTCCGGTTTA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
CGCGTCTATAAAGTCC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
TACTCTTCTGCGTAGC	ref_5874_new	19	46	40	36	31	19	30	13	31	20
GTTACTTGACTGTCAT	ref_5874_new	5	9	9	8	22	6	13	8	12	6
TTTCGAGGCTGGCAAC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
GGGGTAGACAAACTGT	ref_5874_new	19	34	15	23	28	17	32	16	26	13
GCACTCAGCCTAGCCC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
TTTAAAAGGCCCCCTT	ref_5874_new	41	41	40	44	52	40	56	27	33	30
TAAATCATCATCACCA	ref_5874_new	52	66	64	43	65	52	79	51	68	57
CGGCACGGGCACTTGG	ref_5874_new	22	40	43	37	46	36	45	34	42	24
TCCATTTATTGGTGTG	ref_5874_new	9	4	7	12	4	7	4	2	8	7
TTTAATACACTTTTCC	ref_5874_new	21	50	34	21	46	24	53	27	60	29
ATCCGGGATTTGTCCA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
CTTTCAGGACGTTCGG	ref_5874_new	8	5	15	7	15	6	24	13	11	8
CTTTATAATTGTCCGG	ref_5874_new	0	0	0	0	0	0	0	0	0	0
GGAACTGGTGTTATAG	ref_5874_new	0	1	1	0	1	1	0	2	0	0
TGTTAGGTAGTCGAAA	ref_5874_new	8	10	15	12	11	9	6	4	7	10
CATTAGTCTTAGGCTA	ref_5874_new	25	59	48	36	89	35	80	40	75	39
TGTCGGCTCGTATATC	ref_5874_new	61	98	84	81	119	62	88	67	122	53
GACGGCATCACGGCTG	ref_5874_new	0	0	0	0	0	0	0	0	0	0
TAACATGTTAAGCGAA	ref_5874_new	6	2	7	6	15	8	8	6	6	9
TCCTGAATTCATTCTA	ref_5874_new	78	138	96	74	140	91	137	62	154	82
AGGTTAGAACGTTTTT	ref_5874_new	17	11	12	11	7	8	16	14	10	13
CCGTATCGGTCGTAAG	ref_5874_new	23	25	20	18	24	22	29	19	25	16
ACATTCGCCTGTATAT	ref_5874_new	12	17	5	18	41	3	28	13	20	11
TCCAACGATTGTCTGT	ref_5874_new	0	0	0	0	0	0	0	0	0	0
CTGTGTGTGAGAACTT	ref_5874_new	10	9	14	12	13	8	20	14	15	7
AGTGGCTTGTCTCCAA	ref_5874_new	43	70	65	47	75	47	70	43	91	45
CGATCATATGCCTGTT	ref_5874_new	78	74	75	86	91	71	116	64	89	71
CCCTAACTAGGCTACA	ref_5874_new	22	24	20	16	31	18	22	18	25	11
TTGGACCGCATTGGTC	ref_5874_new	3	7	6	5	5	6	10	8	7	2
ATCACAATCGTCTGTA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
ATCGCTATGTGTATTA	ref_5874_new	26	22	28	22	39	19	62	24	43	18
TTCCGCTATTGATCTC	ref_5874_new	13	13	16	8	7	16	24	10	11	9
GAGTGTATTATCTGAC	ref_5874_new	17	18	16	25	31	31	21	17	38	27
GTTTAGATTTCGGTAA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
TATTTTTTTTAGTTTG	ref_5874_new	134	152	148	124	194	136	194	131	181	117
GGGATGCTGGTTAACC	ref_5874_new	5	6	5	11	16	8	6	8	14	5
CGTGTCTTAAAGGAAT	ref_5874_new	127	179	138	100	167	103	158	96	189	93
TGTTTACACTCAGAGG	ref_5874_new	43	101	47	36	75	48	99	36	77	30
ACGCTTCGTCTCTACT	ref_5874_new	31	37	31	20	42	29	42	16	39	16
TACGGCCGACACCCCG	ref_5874_new	42	35	49	43	42	51	60	35	45	36
CTGATAGCTAGATTTC	ref_5874_new	46	69	68	54	106	55	80	46	93	34
ATGGCTCAGTTATTTC	ref_5874_new	2	2	1	6	6	6	8	3	7	1
CAAATCTCTAAAAATC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
ATTCAGTTCCATTTGG	ref_5874_new	32	33	28	24	47	36	28	18	41	33
TGGAGCTCTAAGACCG	ref_5874_new	29	22	27	21	33	15	38	24	39	28
CATGTTGTCGCAGAGG	ref_5874_new	0	0	0	0	0	0	0	0	0	0
GTAGAGAATTCTACCG	ref_5874_new	5	16	8	11	27	7	13	8	16	9
TTCCGGAATAAGTTCC	ref_5874_new	72	108	89	61	108	64	126	60	97	69
CAAGCACGCAACAAGG	ref_5874_new	0	0	0	0	0	0	0	0	0	0
GGTCAACCGGAATTTA	ref_5874_new	4	16	5	6	24	4	7	2	17	3
CGCTCTATCCCTAGGA	ref_5874_new	5	13	4	8	6	4	17	6	10	3
ACTTTCTCTAAAGGTC	ref_5874_new	6	4	4	2	4	5	10	6	11	3
GGATTTGGACTATTGG	ref_5874_new	84	95	80	70	105	73	112	69	126	63
GAGCTGGAAGCTTCGT	ref_5874_new	13	20	11	14	18	15	9	9	20	23
GCGCGTTTGGGCATCC	ref_5874_new	13	14	19	11	17	12	14	7	29	15
TTCAGACTATAGTCCG	ref_5874_new	8	18	12	6	16	7	16	6	15	12
TTATAGGACGTCGTTC	ref_5874_new	11	21	7	7	16	4	15	1	9	4
CTAGGTGTTGCACTCG	ref_5874_new	7	16	9	10	7	3	21	8	14	4
ACGTTTCGCGGTAAAA	ref_5874_new	3	2	4	7	5	3	10	0	7	7
GAGTTCGTTCATAAGT	ref_5874_new	61	80	90	51	74	66	84	53	103	60
TCTCGCCTTGTCGCGT	ref_5874_new	0	0	0	0	0	0	0	0	0	0
CTTTGTCGTCGGGTCA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
CTTCTCAGCTGTCTAT	ref_5874_new	9	25	22	13	26	9	14	4	27	8
GACTCGGGTGGTGCGC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
GCATCCTTGCGCCAGA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
TCGAAAGCATACACGC	ref_5874_new	0	0	0	0	0	0	0	0	0	0
ACCTTTTCAAAATTAC	ref_5874_new	23	33	25	27	29	7	27	22	31	15
GAATCAATCTCTAGAA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
AAATTCGATGGACACA	ref_5874_new	0	0	0	0	0	0	0	0	0	0
CTCACTTTTACCCATG	alt_5403_upstream	32	41	54	38	46	25	36	37	47	25
CACAAAGGGGTTCCCG	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
CGCGAGAGGGTTTCTA	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
GTCGCCAGCCCAGTTC	alt_5403_upstream	6	13	13	5	9	8	5	16	9	6
TTACTTTGGTATATAT	alt_5403_upstream	21	16	21	15	17	10	11	12	22	8
CATCAGCGAAACCTTC	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
GCCAGAGGCGCTTGAA	alt_5403_upstream	12	10	14	11	13	12	16	12	11	10
ACCTCCGCCAATGCCG	alt_5403_upstream	20	19	17	12	10	9	6	9	13	8
TCTGGATGGTATTCGC	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
GCATAGGATTTTCCGT	alt_5403_upstream	79	51	82	80	85	59	64	68	78	79
CTGTTTCGACAGGAGA	alt_5403_upstream	49	62	77	56	67	48	57	32	63	53
AACAGCCCACGTCTAA	alt_5403_upstream	15	22	16	11	17	12	20	8	22	7
TTATAGGTTATCAACG	alt_5403_upstream	56	67	77	68	75	69	87	65	95	58
CGGACTTTCGCGAAGA	alt_5403_upstream	10	21	18	16	11	19	12	11	15	11
ACGCTATTGGGTTACG	alt_5403_upstream	31	35	29	42	43	25	33	20	33	26
CGACTAGGTTCGTTGG	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
CGGTAAAGTCATCGAC	alt_5403_upstream	33	49	35	40	50	32	79	33	73	28
TAGATGGTCTACGCGA	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGGGATGCGATGT	alt_5403_upstream	22	30	27	22	32	28	29	21	36	33
TTTTACGCGCTGGTGT	alt_5403_upstream	17	22	22	22	19	21	27	11	23	13
CCCGTCCGAGCCTGAT	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGCGTGAAGTAGG	alt_5403_upstream	33	37	34	31	23	21	41	31	25	27
GGTCATGGAGGGCATC	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
AACGAGTTCGCGATAC	alt_5403_upstream	64	67	68	63	64	55	64	55	70	61
CATGGAAACAAAGGTG	alt_5403_upstream	12	13	9	19	12	8	14	12	21	10
ACCCGGTGTACGATCG	alt_5403_upstream	22	20	37	26	36	35	38	27	28	12
CTCCTCGTGGGTTTAT	alt_5403_upstream	22	32	37	11	33	25	23	16	32	21
TCCCGGGAGTCCTCGC	alt_5403_upstream	13	22	11	16	27	16	34	8	32	12
AGCTGTACCTATGCTC	alt_5403_upstream	35	47	56	26	46	47	43	45	51	37
GTATTACATTACCGTG	alt_5403_upstream	35	47	32	25	57	29	31	22	42	28
GTAATTGCAGCAATAT	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCATGTTGTTGG	alt_5403_upstream	25	49	21	15	56	11	49	15	48	17
ACTGCTCGACCGTAAC	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTTCCTAAATACC	alt_5403_upstream	87	119	107	98	133	87	122	86	147	78
ATCATGGTCGAGCTTA	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
TGGTACTCCATCCAAT	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
TCCGACTGAGGTCCGG	alt_5403_upstream	12	24	25	14	19	16	23	16	22	7
AACCTCGTAATAGCTG	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCGATGGAGAAAC	alt_5403_upstream	7	0	5	5	4	7	5	1	2	5
GTGCTTTAATGCTCCA	alt_5403_upstream	5	6	12	2	9	4	3	5	4	2
CGGAGTCGTCGTCCCC	alt_5403_upstream	10	13	9	8	23	10	24	9	19	15
AAGTACGTTCTTCCAT	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATCACTTGCCTC	alt_5403_upstream	8	3	3	2	5	3	3	3	2	4
GTTGTATTATAAGGGG	alt_5403_upstream	19	33	29	16	35	32	32	14	33	19
GTGTATTGTTTAGAGT	alt_5403_upstream	40	54	45	39	63	33	61	30	75	38
GTTCTTTACCGCCTAT	alt_5403_upstream	2	2	0	8	6	1	6	1	7	7
CTATTCAGTTGCGCGC	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTTCGGTGTCCGC	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTCACCGCGCTTG	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
GACAATGTGTTTTCTT	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
CCTGTTGATTTTGTTC	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
GATGATCCTTGGTATT	alt_5403_upstream	20	29	28	24	23	26	35	21	32	17
AGAGATTCCTACCGTA	alt_5403_upstream	1	11	5	5	16	3	10	5	17	6
GCATAAACTGCCACTG	alt_5403_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCCCGCATAAGAC	alt_5403_upstream	69	63	97	98	73	79	69	89	94	73
TGTATGAATTTTCTCT	alt_5403_upstream	91	96	119	97	113	99	101	83	114	98
AACCGTTTATGGACGT	alt_5403_upstream	0	0	2	0	0	0	0	0	0	0
TGCACCGCATTCAGTT	alt_5403_upstream	16	17	15	12	11	19	23	22	12	11
TTGAATCTCTACGTAC	alt_5403_upstream	54	93	73	70	102	39	147	34	133	34
TGAAGCTATCATTTTA	alt_5403_upstream	15	15	21	12	14	11	12	11	13	11
TTGCACTGTAAGTTTA	alt_5403_upstream	3	11	10	8	7	7	15	7	15	6
CGGCTTCAAGAACTTC	alt_5403_upstream	46	49	68	38	41	44	35	48	48	40
ACGCATATTTTGGACA	alt_5403_upstream	22	31	46	27	26	26	41	41	26	28
TAGGTGTACATATGTT	alt_3315_fdr	130	85	181	138	99	120	82	127	100	111
ATGGAGCCCTCACAGA	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTCCTGAATATTG	alt_3315_fdr	83	60	94	81	52	71	50	68	48	62
CCTCCTCCGGACTCGT	alt_3315_fdr	77	55	83	61	76	68	72	74	82	56
GATTGTAGCTAAATAA	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TGGTGGGACGTGTTGT	alt_3315_fdr	72	58	110	79	65	93	55	88	74	63
CTGACAAAGCTTTAGC	alt_3315_fdr	43	37	49	33	26	36	37	43	45	53
TCTCCTTATATTTGGA	alt_3315_fdr	93	102	122	108	70	81	117	116	87	120
TGCGTGCTACTAAGTA	alt_3315_fdr	247	169	273	241	182	199	164	205	132	206
ATTTGTACTGGAAGAG	alt_3315_fdr	13	10	17	16	7	13	9	17	11	2
GTAATTCAATAGCCTA	alt_3315_fdr	24	14	34	25	28	30	19	30	24	24
AGATTCAGGTGGATCG	alt_3315_fdr	168	116	204	191	118	178	112	165	125	136
CCGTTAAGACTTTTAA	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTCTTTCTTATAT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
ACCAAAGTGTTACCGC	alt_3315_fdr	8	5	12	12	11	8	11	12	6	6
AAAGTCGAGTTGATCT	alt_3315_fdr	23	19	39	28	22	24	17	31	26	22
GCGGCAGCCCTCAGCA	alt_3315_fdr	628	402	763	616	377	641	404	585	437	561
GACTCGTAGAGTTTTT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
GAAGGAATCAGCGGTA	alt_3315_fdr	131	70	167	145	67	129	74	108	71	105
CTCCGACTCGTCCATT	alt_3315_fdr	432	290	463	405	295	342	295	400	308	351
CTTTGTGCAAGGTTAA	alt_3315_fdr	105	74	146	94	97	119	107	95	78	112
CTGGTGTGCTCATTGC	alt_3315_fdr	86	73	122	107	84	95	73	102	75	73
GGCAAGTTCAGGACAT	alt_3315_fdr	53	19	54	31	27	43	25	39	33	34
GTTAGGTGTCCGTCCT	alt_3315_fdr	52	32	88	68	34	56	37	51	43	52
CGTAAGAGGGCCTTTA	alt_3315_fdr	58	31	62	53	41	44	41	46	53	33
TTTGCCCTGCTGCATA	alt_3315_fdr	167	92	174	189	89	126	65	131	108	147
TCAATGGCCCCAAGAG	alt_3315_fdr	41	13	51	36	28	34	22	38	17	38
TGCCAAGTCTTGTCTC	alt_3315_fdr	174	113	199	170	120	145	122	145	134	142
AACTTAGGCCTGCCCA	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCGTTTGCTTGTT	alt_3315_fdr	125	74	140	102	90	98	78	103	86	104
TGTTTAATTCGTTTTG	alt_3315_fdr	158	115	240	135	96	149	124	129	112	140
ACACGTGTCTCATCAA	alt_3315_fdr	9	2	10	8	7	8	6	12	16	14
TTCAGTAAATTTTCAC	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
CCGAACCTGAGTACAC	alt_3315_fdr	38	41	48	57	58	31	52	36	45	42
CATAGTACTTGGTAAG	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTGAAATCCGTTG	alt_3315_fdr	149	111	159	148	76	119	89	125	83	131
AAGACCGGGATACGTG	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGATTTATTTCTG	alt_3315_fdr	73	60	86	76	47	61	55	70	53	58
CCTGCTTCGTAATATC	alt_3315_fdr	5	1	8	7	4	13	7	7	2	5
GCCCAAAAATGGTGTT	alt_3315_fdr	49	35	61	32	28	61	39	52	29	57
TTTCAAGGACTTTATT	alt_3315_fdr	334	194	388	301	199	322	201	284	221	279
TTTGCATGCGAGCAAT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TACCTTTCCTTAAAAG	alt_3315_fdr	127	86	139	122	98	122	117	131	100	107
AATACCTCGTTCCCAC	alt_3315_fdr	43	30	47	45	29	49	38	53	27	43
CCACTCAGGAGCGTTT	alt_3315_fdr	71	29	75	58	38	52	34	56	28	55
CTACGTAAATCGTGAG	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCTTAGTGGGACG	alt_3315_fdr	57	54	84	79	46	91	52	77	62	68
GTTTATCGCCCCTGAT	alt_3315_fdr	19	9	32	26	13	16	9	25	23	13
AGGCTATCCTAACAAT	alt_3315_fdr	30	14	33	20	11	14	13	14	17	26
TGATGACATGAATTGG	alt_3315_fdr	78	45	113	88	59	75	59	98	53	77
CGAGATAGACTTTTCA	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCTGAATAATCCA	alt_3315_fdr	134	97	182	155	82	158	98	133	98	154
CCCATTAAGTCGGACA	alt_3315_fdr	60	41	90	69	38	54	34	54	46	49
CTGGGCTATGTGAACG	alt_3315_fdr	30	30	41	48	30	37	25	40	19	37
GACACGCCCTGTCCCG	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
ACTCAGGACAGCAAAG	alt_3315_fdr	83	41	104	73	58	79	42	65	60	59
CATATACAGCGCGATA	alt_3315_fdr	89	43	119	84	38	73	37	71	43	74
CTTACTCGTCGCACTA	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTTTTCCCTCAT	alt_3315_fdr	101	84	135	128	98	123	91	131	98	100
GCGACTGCTTCCTCTT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGCTCCGCCTCCT	alt_3315_fdr	53	55	69	77	49	60	60	74	45	50
GCGTTTGTTTGTAAGA	alt_3315_fdr	225	146	296	264	147	209	158	234	144	207
TGCGTATGTCAACGGG	alt_3315_fdr	30	19	41	37	24	32	20	29	30	36
TATCCCTATTGGAATA	alt_3315_fdr	52	30	59	53	34	34	45	55	39	52
TGAACTGGTTGCGCCT	alt_3315_fdr	131	57	160	131	76	115	66	118	95	110
GTGACTGACAAATTTC	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
CCAATTCCAGCTATCT	alt_3315_fdr	61	65	67	81	73	56	76	68	74	66
AATCATGTCCAGCTAC	alt_3315_fdr	58	24	47	48	27	38	30	45	22	42
TAGGTCTCCAATCCAC	alt_3315_fdr	80	60	83	79	44	62	39	78	47	79
CTCTTGTGTTCGGCTC	alt_3315_fdr	425	266	564	454	290	388	242	381	266	339
CTGCGCACTTACTGAC	alt_3315_fdr	35	9	30	25	19	22	21	28	20	33
ACCTGGACGTTGGCCC	alt_3315_fdr	103	83	124	115	113	100	89	106	86	105
ATGGTATGTTTCATCT	alt_3315_fdr	139	66	137	131	60	127	78	118	77	106
GCCGATTATGGTGGAT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TAAAATTAAAGCAAGG	alt_3315_fdr	213	112	271	215	125	192	123	199	123	160
GTTTTGCTGCACCACT	alt_3315_fdr	26	12	27	19	17	18	10	16	15	25
CTTGTTAAGGTTGGTA	alt_3315_fdr	231	140	276	256	145	237	164	221	193	194
GGTCAGCGTATTAGTA	alt_3315_fdr	63	47	86	97	47	87	37	56	44	75
TTTTTATTGTCATCCG	alt_3315_fdr	43	41	74	74	33	52	34	56	53	53
AAAGCTACAGTCAATT	alt_3315_fdr	18	3	18	18	7	13	11	14	9	24
CCGAGGCATGGGTCGC	alt_3315_fdr	19	30	22	21	30	19	25	22	35	20
CGTTGTCAGTCCCTTT	alt_3315_fdr	111	54	127	94	56	90	64	93	66	95
GAGCATTCTTTCTGTG	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
GGAAGCATTATAGGCA	alt_3315_fdr	24	11	27	17	7	15	13	17	23	12
CCCGGATGCAGTTCTG	alt_3315_fdr	185	97	255	213	108	181	141	187	129	179
TTTGTGCATGTACGAT	alt_3315_fdr	41	41	40	35	46	39	43	32	43	29
GCTTAACGTAAGAAAG	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
GCGGTACGTTTGCTAG	alt_3315_fdr	12	6	14	6	9	9	4	12	14	4
CTCCATCGATAAGAAC	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
CACAATGGGTAGGAAG	alt_3315_fdr	40	24	46	40	30	46	19	36	38	30
AGCGCTCCTTATGTTA	alt_3315_fdr	194	190	285	276	200	216	213	223	224	241
TCTGGATTGCTTCGCC	alt_3315_fdr	85	67	108	113	56	84	64	96	73	91
TTGATGGACAATGGAA	alt_3315_fdr	294	146	344	283	165	274	159	235	152	253
TTTTACCTTAGGTAGG	alt_3315_fdr	182	128	201	186	128	157	129	192	124	154
ACCGTTGCAAAGCCAT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TTTATGGGTCTGTAGT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTAGGTAAATTAG	alt_3315_fdr	23	12	26	27	13	12	15	17	13	20
GCAAGCATTCGTGGTA	alt_3315_fdr	43	28	60	53	32	40	31	47	34	39
ATGGGTTGGTCAGTTC	alt_3315_fdr	90	62	135	101	43	92	81	102	77	99
TGTTGCTTATCCCGAC	alt_3315_fdr	96	119	125	110	119	73	115	101	149	74
AGCTATACATCGCCGT	alt_3315_fdr	19	22	35	37	26	29	37	22	21	25
GTTAGTTTAACTTCGT	alt_3315_fdr	0	0	0	0	0	0	0	0	0	0
TGGAGGAAACCTAAGT	alt_3315_fdr	24	23	53	39	26	22	26	24	18	34
CCTCACGGGGCAGTAA	ref_790_RC	5	20	9	14	21	6	26	9	27	8
GTCGATCATATGGAGG	ref_790_RC	3	13	6	5	4	6	11	7	9	8
GGAATGCATTACGATT	ref_790_RC	17	39	18	21	41	22	49	23	60	18
TGTTCTCGTCTGAGAA	ref_790_RC	17	20	16	8	29	12	25	9	23	12
ATTAGGTTGCGGGCGT	ref_790_RC	53	122	81	70	107	63	139	47	144	47
TGAACTTTTTAGGGCC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
ACGCTTATCCAGTGCC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TCGTGGGCACCCGGCT	ref_790_RC	2	4	0	2	3	3	5	2	10	0
TAAATGCGATATCGCC	ref_790_RC	63	144	89	74	130	94	161	68	165	74
GTTCAACCGTTCGAGT	ref_790_RC	3	18	0	5	15	2	9	5	10	1
GTGTCACTGCGTCATT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
AAAGAGGTTGTATGTT	ref_790_RC	18	45	16	20	41	29	45	21	64	15
GACAATGGGACCTTGT	ref_790_RC	12	32	20	23	40	22	55	20	40	11
ATTCGTTTGTTGCGTG	ref_790_RC	15	43	25	19	56	23	61	26	55	17
TAGCTAGTTCGAACTA	ref_790_RC	79	202	102	121	219	69	228	96	184	87
AGTAATTGTAAAATCT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GCAAGTTGCCTGTCAT	ref_790_RC	6	29	12	9	26	18	22	9	22	8
GTATCGACGTTTGTTG	ref_790_RC	20	18	21	15	27	8	24	11	36	14
TGTGGGTATCTGGTGT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CGTCTATCAGCCTGGT	ref_790_RC	23	62	21	26	55	19	53	15	54	18
ACCATTTCACTATGAA	ref_790_RC	11	26	17	8	33	10	26	9	28	14
CGCAATTACGGCCGTG	ref_790_RC	1	2	6	0	6	1	2	0	1	7
TTCGCTTTCTAGTTAA	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CTGCGTATTTGGACCG	ref_790_RC	21	35	29	22	36	13	47	26	32	14
CTCATCCGGAGTATGG	ref_790_RC	4	6	4	4	4	2	10	3	8	4
CCCCCTATCTGGTTTG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GTCAGCACCTGGACGT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CGTGCCGGCCTTATAT	ref_790_RC	4	11	4	3	16	5	24	8	19	4
CGAGTGGCATCTCCGG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CCTTAATGGACCCTGA	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GTCTCTACGTTACCTA	ref_790_RC	2	23	5	1	29	4	31	1	23	0
TCAATGCATTCGCCCT	ref_790_RC	5	11	8	4	4	1	9	5	15	0
GGTGCATCTAACTACG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GCTGCCCCTTTGTGTT	ref_790_RC	2	9	10	2	11	2	2	0	5	1
GCCTCCCTAGGGGCAG	ref_790_RC	8	9	7	9	12	5	19	5	12	3
TGGCGCAATTGCTCTA	ref_790_RC	4	5	3	0	4	1	2	3	3	2
CGTTTTGCCTACTGCG	ref_790_RC	6	5	10	10	3	8	9	2	10	5
GCATCCCCCTTGGTGA	ref_790_RC	13	39	22	22	54	11	45	14	53	11
CTCCGCTCTGCACAGT	ref_790_RC	0	12	7	1	9	4	9	1	9	2
CCGGCGCCTCCCCCAC	ref_790_RC	12	40	15	15	34	15	44	12	31	9
TGTCCTTGCCGGTACT	ref_790_RC	12	19	14	7	24	7	18	12	25	6
TGCTCGCTAGGGTGCG	ref_790_RC	25	67	26	20	76	18	49	21	63	19
GAAGACGCGCGCTGCA	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TGTGGTTTGTTAGTCA	ref_790_RC	3	19	11	6	22	7	16	7	17	5
AAATTTTGCATAAGGC	ref_790_RC	24	41	37	20	62	20	69	23	41	27
AGAACGGACATTGACT	ref_790_RC	8	20	3	9	6	9	14	5	12	6
GACGGGAATTTTTCTT	ref_790_RC	35	66	60	40	68	34	66	33	59	40
TGGGGCAGGAGCCTAG	ref_790_RC	12	17	9	10	13	13	19	6	8	9
AGGTCGCCCGCATGTA	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GAGCTTTTCCCTGGGG	ref_790_RC	10	6	9	4	13	6	11	12	12	3
TCAGTGACAGTTTGTA	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CTTTTAGCTGTTTCGG	ref_790_RC	22	42	35	30	45	23	58	23	55	20
TATCTTAGATATACGC	ref_790_RC	8	13	6	6	22	7	17	8	17	3
AATTCACGTCTTGGAT	ref_790_RC	23	53	43	36	62	35	54	27	54	28
CCTATCTTCGGGTGGG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CGCTCGACGGATAAGA	ref_790_RC	10	30	21	18	40	17	30	8	40	15
TGCCAGCGTAGGGGGT	ref_790_RC	6	17	7	9	10	5	21	6	15	2
TCCATTTTTGCTCTCT	ref_790_RC	7	8	14	8	19	12	10	7	13	6
CTAGGGGCTTAGTGTC	ref_790_RC	1	1	7	3	9	2	9	5	2	4
CGTCCCCGACATTCTT	ref_790_RC	8	45	21	16	50	12	55	19	52	9
CCCACGCGGTCGGGTG	ref_790_RC	29	70	34	20	93	25	67	20	98	27
CTCTGCTGGGGGAGAA	ref_790_RC	2	15	12	6	16	11	26	9	19	5
CGCGCTTCTGTGATTT	ref_790_RC	4	4	3	3	5	1	6	2	9	6
TACATGTGTGTAACGT	ref_790_RC	2	14	9	3	5	7	8	2	11	3
GATCTCTGAGAGCATT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
AGCGGGCAAACTGACA	ref_790_RC	8	25	11	14	35	8	28	8	21	15
TAGGCTTAGTATGAAT	ref_790_RC	10	10	12	9	7	8	7	2	8	5
GACTGTTGCCATGTTC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TCGACTATGGTGCTTC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GAATTAAATGTTGCAT	ref_790_RC	16	17	16	15	6	8	14	14	27	12
GTTTTGCGATTTGGCT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TTGTTTTTTATTTGTA	ref_790_RC	16	45	17	13	27	19	29	8	56	16
GGGATGTATCGCATGT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GATCTCAATCGTGTTC	ref_790_RC	10	13	14	5	22	13	17	8	12	4
TTTGTCCGTTGCAACT	ref_790_RC	13	11	5	14	17	6	18	5	13	6
TTTAGCGACTGTGTGA	ref_790_RC	5	8	4	6	7	7	13	3	8	2
GGCATTTGGAGTTCCC	ref_790_RC	23	40	23	17	26	17	36	18	34	15
CGGGCCAAGTTCTCCC	ref_790_RC	19	57	15	22	61	12	45	24	54	23
ACCACCTGCGAACCTT	ref_790_RC	37	52	27	26	52	24	70	23	64	23
GCTCTCCTTAAGGAGG	ref_790_RC	23	46	39	25	66	18	41	20	68	34
TTTGTCCTACATTCTA	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GTATCCTTGTTTACTT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TCGTTTACCCAAATCC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TACTATGTTCATCACA	ref_790_RC	5	17	10	6	6	5	10	4	7	5
CATCGAATTGTATCGG	ref_790_RC	3	4	2	1	12	8	9	4	1	5
TTGCCACCACGCTTCT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GGACTTGTTCTAAGGC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
AGGCGGCAGTACTTTC	ref_790_RC	84	140	103	87	160	80	184	77	160	74
CGAAAATTAGCCAGCC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
AGCTCCACGAAGAGAG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
GAATAAGCTTTTTCAC	ref_790_RC	3	7	2	0	4	2	4	2	1	1
ATCGTGTAGTCTAGCC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CCTTCTTTGTTTTTGG	ref_790_RC	45	69	43	33	45	43	74	30	55	34
ACCGCGTTGAGTCTGC	ref_790_RC	14	26	18	9	27	5	23	9	29	11
TAATGATGTCACTATA	ref_790_RC	24	60	37	43	49	36	48	42	54	25
ACAGAGGACTTTTGCA	ref_790_RC	7	17	13	13	13	8	20	7	28	11
CCGTTCCTCGAGTGGA	ref_790_RC	4	15	1	3	22	4	10	4	13	1
GCGTCTGCAGGGTCGT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TTAGGGTCTAGCCCGG	ref_790_RC	18	31	16	12	35	15	27	10	21	17
TACCCGTGGGTTGTGC	ref_790_RC	0	0	0	0	0	0	0	0	0	0
CCGTACCAACCAGTTA	ref_790_RC	7	12	11	7	18	10	11	5	17	7
TTTCTGATGTCCCCAG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
AATTTCCTGTCGCCTA	ref_790_RC	21	36	23	18	36	10	47	22	35	19
CGTATAACTTTTCCCT	ref_790_RC	10	14	9	14	9	6	18	4	9	10
CTTAGTTTGGCTGATA	ref_790_RC	93	142	107	95	181	103	193	68	204	85
TCTGTCATGTGTGCCG	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TTCATCATGTCCGCTA	ref_790_RC	135	256	151	119	253	108	255	124	259	118
CCGTATAACGATTATC	ref_790_RC	10	14	6	7	15	14	11	6	25	4
TTTGGGTCTTGGTCTG	ref_790_RC	39	48	37	28	55	30	51	30	70	26
TGATCAGTGTAGCCCG	ref_790_RC	3	12	14	6	16	4	7	3	8	7
CCATCAGAGTATAAGA	ref_790_RC	11	23	13	11	19	11	30	6	25	11
ATGGATTCAGAGCACC	ref_790_RC	3	5	4	1	5	0	3	3	2	0
CTGGATACGGAGCTTT	ref_790_RC	0	0	0	0	0	0	0	0	0	0
TTGTCCTTCATGACCC	ref_790_RC	7	25	8	14	21	11	20	8	20	4
TCTGGGTCGGTGGGCC	ref_790_RC	11	50	7	4	53	12	51	2	45	6
ATATTTCCCACACCGT	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
CACTGCTGGACAAAAG	alt_2099_reverse	37	60	37	36	51	30	57	35	56	44
TTTAAATGTGTCCTCT	alt_2099_reverse	34	45	33	25	35	20	56	27	71	29
TGCAGGTAGCTACACT	alt_2099_reverse	11	12	10	9	19	15	10	16	15	12
TGGCTGTCCCAAATAC	alt_2099_reverse	24	26	34	24	35	26	41	28	35	21
GATAACTTCCACCTCA	alt_2099_reverse	15	19	14	17	21	15	18	14	19	6
GATCCCAGCGTATCCC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
AGTCGAAGTGTTCTCC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
AACGAAATTTGTATTT	alt_2099_reverse	14	31	18	21	16	17	26	15	18	16
CCGGATCTCAAGCCTC	alt_2099_reverse	0	1	0	2	0	0	1	0	0	0
TCACTTGGCTCGTACA	alt_2099_reverse	5	11	3	5	8	7	8	6	5	4
GTACTGTCGAGTCTTT	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TCGTATATACCTTGTC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TTACACGCGCATTTTC	alt_2099_reverse	0	1	4	3	2	1	0	1	2	1
CAGTTCGGTTTTTCGG	alt_2099_reverse	67	164	102	65	149	67	152	50	172	54
ACAGTAAATGTCTGGG	alt_2099_reverse	0	0	2	1	1	1	0	1	2	1
CTGCTCTGATCGTAAA	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TTTCACAGTAGATTCC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTAAATTTTAATG	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
GTGCACAGTCAGCCGT	alt_2099_reverse	33	59	34	24	57	29	42	23	50	22
CCCGTAGAGCCTCCTT	alt_2099_reverse	2	21	4	7	25	4	26	11	34	7
TGACAGCGAACTTGTC	alt_2099_reverse	17	49	40	32	48	26	71	36	49	18
GATTCACAGATACCCT	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
AATTCCTTTCCTTGCA	alt_2099_reverse	24	26	32	20	27	22	27	18	30	18
TGGTATTCGCTTAGGT	alt_2099_reverse	2	4	3	2	3	1	7	0	6	8
CGGACAGACGTTAAGT	alt_2099_reverse	37	51	29	26	38	24	53	29	48	31
TTAGGAGTCGCTCATT	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
ACTATTAAGTCGGCGC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TAATCCTTGGTTTCTA	alt_2099_reverse	62	80	64	58	65	51	82	66	82	54
GACATATTGAAAAAGT	alt_2099_reverse	4	5	7	6	6	3	14	3	9	12
GTCTTTTCCGTCGAAT	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TATCTGATTCTTTCGA	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TCTCACGTTATCGCAA	alt_2099_reverse	67	88	88	90	103	59	86	62	95	51
ACTTGCTTGTTGTCCG	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCACTGTGCGGCG	alt_2099_reverse	27	63	22	33	53	30	57	19	52	35
CTCATGTGCCCTCCTC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TCCACACTCCAGAAGT	alt_2099_reverse	18	53	14	24	55	16	41	12	52	18
CTCTTTATGCAGAGAC	alt_2099_reverse	43	54	59	39	79	52	88	38	97	50
GTGCATCTTTACAAGG	alt_2099_reverse	5	7	8	5	4	4	13	4	18	7
CCTTACTGGTATCCTT	alt_2099_reverse	2	9	7	2	3	2	3	4	8	1
AGGCGATATCCCTGCA	alt_2099_reverse	94	109	122	87	129	86	120	77	127	93
TAGAGTGGTAACATGT	alt_2099_reverse	13	33	18	14	33	22	24	14	41	19
TTGTTCTGCCGCAATC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TATGCTCACTCATCCA	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TCATTCCTTCTGCGGA	alt_2099_reverse	25	19	21	7	29	15	19	14	24	11
CCTCCTACCTATGCTT	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGCGATCTGTAGA	alt_2099_reverse	11	8	13	20	15	9	18	8	17	13
ACGGCTGAAATTTAAA	alt_2099_reverse	85	85	75	53	81	51	85	50	81	45
AACTAATTCTCGTTCC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TAGTACTGGCATGAGC	alt_2099_reverse	128	186	163	138	193	124	214	115	197	113
TCTTTTAGCGTTCCCT	alt_2099_reverse	18	23	15	15	12	12	23	3	18	10
TTCTCTGAATGGCCGT	alt_2099_reverse	36	51	52	42	48	40	54	30	51	31
TGGGCGCAGTATCGTC	alt_2099_reverse	91	148	116	110	162	86	162	99	169	94
TACAAGCCCTACATGT	alt_2099_reverse	0	4	2	0	1	1	3	0	3	0
TCTTTGAGATGCCGCA	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCACTGGTTACTG	alt_2099_reverse	32	45	33	37	38	42	56	40	45	28
TAGAGAATCATCTATT	alt_2099_reverse	45	70	38	47	64	44	68	41	71	35
ATTACCATAAACTAAG	alt_2099_reverse	52	98	57	56	94	42	86	53	96	45
AGTGGATTCCGTGTCA	alt_2099_reverse	1	9	3	2	5	2	4	2	3	1
GCCAATCGGACTATCG	alt_2099_reverse	192	299	221	170	318	160	320	146	281	154
GTGCATAGACATGACA	alt_2099_reverse	31	67	27	29	53	25	52	23	35	13
TCGAGAGATCATTGTT	alt_2099_reverse	19	41	23	24	26	16	41	22	34	21
TGTACGAATGATCACG	alt_2099_reverse	8	7	10	5	13	10	11	9	10	9
ATGGCGATAGGTCCGC	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
TATTGAGTCCGGTTAA	alt_2099_reverse	0	0	0	0	0	0	0	0	0	0
CACGTGATATATGTCT	alt_2099_reverse	19	13	17	9	29	15	13	11	21	18
AAGGACCCCGTGATTG	alt_2099_reverse	87	109	91	79	115	66	118	97	126	70
CTATTCGTCCCCTAGA	alt_1495_missing	13	27	29	18	26	20	28	19	21	16
ATCCGATCCCTGTTTA	alt_1495_missing	16	6	4	4	8	2	4	5	7	6
GTATGGCTACCAATGT	alt_1495_missing	1	3	1	3	5	3	5	5	0	0
GTAAATCTGCCCTAAA	alt_1495_missing	10	9	6	8	3	4	3	2	10	11
TGTCGTCTGGGCCGAC	alt_1495_missing	15	21	25	15	29	26	25	32	29	20
TTGTTTAGATATGTCA	alt_1495_missing	12	8	4	8	9	4	7	6	12	2
TCAAGGCTGTCAGCCT	alt_1495_missing	3	3	8	4	7	6	3	2	5	7
ATTTAGTGGACTGCAA	alt_1495_missing	13	32	20	15	34	22	34	18	29	9
CCTGTTAGTGAGTACA	alt_1495_missing	5	2	1	3	9	0	4	2	4	0
CGTTTTAACCCGGACC	alt_1495_missing	79	95	93	95	96	64	93	100	137	75
CGCATCCGTAACTGCC	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
TAATTGGGTCCCCGGA	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
AGGTTATACTCGCCTA	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
GTTGGGTTCCTGATCA	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
TTAGCCGTTCTAGACT	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
GTGTGCCTCGGCCTAG	alt_1495_missing	12	15	12	7	24	10	13	10	17	15
CGTGCAACAGTCATAG	alt_1495_missing	2	5	7	7	6	4	8	5	8	3
GTAAGTCGTGAGCGTT	alt_1495_missing	10	19	17	19	20	14	22	20	10	16
ATTTATACGTCTAAGC	alt_1495_missing	23	31	32	34	38	30	41	14	33	31
TTAGTCTTCCATTTAT	alt_1495_missing	2	6	6	8	9	1	8	3	5	5
ACACCGGTCCATTGGC	alt_1495_missing	122	325	138	104	374	91	371	84	393	95
TAATTGTATGTACATT	alt_1495_missing	39	47	49	54	38	40	56	42	63	43
CATATAACAGATCTCA	alt_1495_missing	123	128	160	108	165	123	143	117	156	97
CTACGGACTTTGCTCG	alt_1495_missing	20	41	21	28	37	20	26	20	37	22
TATACCGCGGTCTGGT	alt_1495_missing	5	17	16	12	10	6	10	12	17	5
AGAACAAAGTCCCGCG	alt_1495_missing	5	3	4	9	8	2	8	4	5	3
TCATGGTTAGACGCAA	alt_1495_missing	0	11	3	0	3	1	4	0	1	1
GACCCACCGGTCTGTA	alt_1495_missing	8	14	15	11	16	2	10	9	13	2
TACGTTTTTGCGATTG	alt_1495_missing	105	149	149	112	165	114	171	114	131	115
TAGAGCCGAATCTAGA	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
CAAATCGGGATTAAGT	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
TGTCGTCTGGGCCGCC	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
AGCAGCCGACTCCAGT	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTACTTCAAAAC	alt_1495_missing	50	62	47	52	57	42	58	44	62	63
ACAGTTTTGTTAGCTA	alt_1495_missing	0	0	0	0	0	0	0	0	0	0
TGATGTCGGCTCTGTC	alt_1495_missing	23	32	26	29	17	21	21	13	22	16
TCTGAAACAATCCCTA	alt_1495_missing	62	83	70	73	74	65	79	42	90	55
GTTGCGCGGATGTCAG	ref_5849_new	10	6	13	8	5	8	4	8	5	6
ATAACTTTTCTCCGCG	ref_5849_new	42	22	62	40	25	45	32	42	20	46
TGATTAGTGTCCAGGA	ref_5849_new	0	0	0	0	0	0	0	0	0	0
CAACGCATGGGCATGT	ref_5849_new	43	27	61	68	21	48	32	42	36	37
GATTCCTATGTTGTCC	ref_5849_new	0	0	0	0	0	0	0	0	0	0
ACGCTATATCGGTATT	ref_5849_new	141	68	165	141	84	120	108	125	101	124
TTCAGTTCGACAATGC	ref_5849_new	0	0	0	0	0	0	0	0	0	0
ATGCTTAGATCGCCAT	ref_5849_new	0	0	0	0	0	0	0	0	0	0
GATTATTTTAACCAGA	ref_5849_new	39	24	45	32	15	32	21	33	10	32
TACTGCTCAAATTCCC	ref_5849_new	126	65	125	105	48	106	71	101	55	106
ATCTCTTCAGTCCAAC	ref_5849_new	21	16	28	25	23	23	15	24	19	11
TTACTTATTAATTCTG	ref_5849_new	156	67	207	209	84	176	99	157	96	134
GTCTTTCAGCATCCAC	ref_5849_new	126	94	193	146	106	118	97	138	98	116
CGTTGGGTGACTCTGG	ref_5849_new	9	7	9	6	15	5	8	8	5	3
AGACTCCTACGTTTAA	ref_5849_new	19	7	20	24	10	22	12	23	12	16
AGACTGCGATCGGCGC	ref_5849_new	0	0	0	0	0	0	0	0	0	0
GTCCTGGCTGACTCCT	ref_5849_new	42	41	44	51	35	51	25	69	33	37
CCGATGCTTCCCGGGA	ref_5849_new	0	0	0	0	0	0	0	0	0	0
TTATATAGTATACTGG	ref_5849_new	10	8	15	8	8	8	9	17	7	11
TAACGGTACATCCGCT	ref_5849_new	28	13	35	24	14	31	16	25	20	24
CAAAAGAAACGAGTTG	ref_5849_new	86	44	110	87	55	83	40	87	45	77
AGTATTGTCTTCGCGC	ref_5849_new	0	0	0	0	0	0	0	0	0	0
TTGGTGCGGCCTCTGG	ref_5849_new	31	29	60	58	35	62	38	63	30	42
ACATGGCTGCTAGTGT	ref_5849_new	34	4	24	31	7	17	7	13	14	19
AGCAGCTCGTCTAGCC	ref_5849_new	38	28	44	41	35	44	43	35	40	30
CTAATTTCATTTAGAG	ref_5849_new	50	30	65	49	47	54	26	59	27	41
ACGTCTAGTTCTTTTT	ref_5849_new	8	6	5	4	4	7	5	5	4	8
TTCTAGGGCTAAGTCT	ref_5849_new	137	80	152	151	95	139	102	161	101	141
CGGGGTGGCTTGTGAA	ref_5849_new	30	15	36	31	17	33	16	23	18	40
CTTACGAATTGCCTCC	ref_5849_new	122	91	151	146	81	129	82	118	98	108
GTACCCATCTTCCCGG	ref_5849_new	0	0	0	0	0	0	0	0	0	0
GTCCGCTGTGATCTCA	ref_5849_new	16	7	16	12	20	9	18	28	23	15
AAACCTCCCAGACTCT	ref_5849_new	59	55	64	78	40	42	32	58	36	58
CCAGAGTCAACCTTGC	ref_5849_new	0	0	0	0	0	0	0	0	0	0
TTGCATGATTTCAATG	ref_5849_new	15	13	18	19	5	22	10	12	12	16
TTATGTTCGTGGAGAG	ref_5849_new	0	0	0	0	0	0	0	0	0	0
CATGGTCACAAAGTAA	ref_5849_new	8	3	8	10	6	10	2	6	4	10
CAACTATCTCACACCC	ref_5849_new	76	48	57	87	55	75	30	79	49	80
TGACGCAAATATCGCG	ref_5849_new	0	0	0	0	0	0	0	0	0	0
CAGGTCTTTTGTTTTG	ref_5849_new	26	15	22	23	20	36	15	28	15	11
ATTAGGATGCATTTAA	ref_5849_new	14	5	13	11	6	5	3	6	9	5
TTGTTAATAATTTTTG	ref_5849_new	0	0	0	0	0	0	0	0	0	0
CCTTTGTTCCTTGAAT	ref_5849_new	0	0	0	0	0	0	0	0	0	0
ACGTTGCGGTCGTTTT	ref_5849_new	329	184	391	304	191	329	178	289	240	292
AGTCCAAGTGCTCGTT	ref_5849_new	0	0	0	0	0	0	0	0	0	0
GTCCCTTTGATAGACT	ref_5849_new	30	23	32	32	28	32	11	29	33	32
TCCAGAACCTTCTTCT	ref_5849_new	1	3	7	3	5	0	6	2	3	4
TCGTCCTCAGTATTAC	ref_5849_new	6	1	7	5	1	8	2	4	2	6
ACTGACTGGACCATCG	ref_5849_new	78	41	89	90	53	73	48	74	49	59
CCTCGCACTCACTATA	ref_5849_new	26	41	28	36	30	20	37	18	43	12
CGGGTCTATCAGTGGC	ref_5849_new	88	46	123	81	54	80	62	88	59	80
AGACGTCGTCTACACC	ref_5849_new	789	502	1006	843	485	750	481	701	546	756
AATAACTCCCGTTCCA	ref_5849_new	43	44	46	41	36	46	37	26	28	44
GCTGCCGGAATTTTCG	ref_5849_new	39	12	37	28	18	21	13	19	22	21
CAATTGGTGAAAACAA	ref_5849_new	0	0	0	0	0	0	0	0	0	0
GTATCGGAACTCGTTA	ref_5849_new	90	47	101	97	46	79	60	94	53	71
ATATCTTATTCATTTA	ref_5849_new	9	6	14	18	10	19	13	12	14	10
TAAACGTGACGCCTAA	ref_5849_new	22	8	23	19	27	17	12	12	16	19
AACTTGCGTTAACACT	ref_5849_new	7	1	7	6	2	2	2	2	1	2
GTTTATCATCGTGTAG	ref_5849_new	26	16	20	19	18	24	19	13	23	25
AGGAGCACGTGTGCTC	ref_5849_new	43	34	48	51	18	53	27	35	34	47
ACGGTCCTTTAGCTCA	ref_5849_new	118	86	136	115	69	127	79	106	94	116
AACAATCCAGCTTCAG	ref_5849_new	28	11	26	26	7	25	16	31	10	19
GCCACCGCGAACTCTA	ref_5849_new	6	8	13	6	9	11	9	14	7	4
TGACTCAGGTTCGGCC	ref_5849_new	45	12	44	44	15	24	30	33	16	38
CCTGCAAGACGTAGTG	ref_5849_new	1	0	2	0	1	0	1	2	2	0
CATTTTTGCACCAGAG	ref_5849_new	61	44	68	91	63	78	55	66	37	72
GTCAAAGTTCTGGCAT	ref_5849_new	71	33	63	56	43	47	40	32	44	45
TCCCCAAGACACGATT	ref_5849_new	184	124	247	188	119	183	109	183	119	163
TTTCCGGCGTGTATCT	ref_5849_new	27	15	23	25	13	11	10	19	16	26
AATTGTTCATCATGCT	ref_5849_new	3	4	8	4	11	11	5	5	5	11
CCCGGAATCTTGGAAG	ref_5849_new	21	16	33	32	20	22	18	29	17	31
TTGGCTTGTTAATTCC	ref_5849_new	8	10	28	30	14	15	20	10	8	15
TAGATTGTATTATGGG	ref_5849_new	114	65	139	127	73	115	90	116	69	98
GCATTGCTAATGCGTT	ref_5849_new	0	0	0	0	0	0	0	0	0	0
GCCATCCTATTGTAGG	ref_5849_new	0	0	3	0	0	0	1	0	0	0
TTTCGAACGCCCCTCC	ref_5849_new	79	52	105	83	50	93	52	95	62	70
CCATGCTGGCTTCGGA	ref_5849_new	0	0	0	0	0	0	0	0	0	0
AAATATGCGTCCTGCA	ref_5849_new	0	0	0	0	0	0	0	0	0	0
CGTGGCTTGTGTTAAT	ref_5849_new	17	9	22	21	18	21	16	17	16	14
AGACAAAGCATTGCTA	ref_5849_new	11	6	8	7	3	10	1	6	6	7
GGGCCGACGAGAAATT	ref_5849_new	0	0	0	0	0	0	0	0	0	0
GTGAGGCGGGCTTAGA	ref_5849_new	9	4	10	7	5	8	12	7	4	5
GGGGGTTAAGGGAGAC	ref_5849_new	84	39	109	101	35	69	69	83	51	95
TACAGACTCCAAAATA	ref_5849_new	0	0	0	0	0	0	0	0	0	0
AGGATAATCGAGATCA	ref_5849_new	4	6	13	11	4	6	0	2	5	10
TTCTAACTCTTGAGAC	ref_5849_new	17	12	24	18	5	21	13	17	11	18
GCCCTCTTGAACCATG	ref_5849_new	41	31	46	34	28	30	30	40	35	25
AACGGATATCGTATAG	ref_5849_new	56	33	55	49	17	50	28	43	33	37
TTCTCCGACTGTTCCA	ref_5849_new	15	12	21	15	17	11	10	21	15	14
CACTTTGCTGTTTTCA	ref_5849_new	15	8	19	24	8	15	8	18	16	8
AATTGTGTTACAAAAC	ref_5849_new	40	38	53	34	25	40	34	26	32	39
CAAGCGCTGAAAGTTT	ref_5849_new	45	18	33	26	14	37	11	22	10	31
TGTGTCCTATGATCTT	alt_867_negative	22	26	25	22	22	15	33	15	26	20
TTGGTTGTTCTTCTCC	alt_867_negative	37	22	40	56	36	37	51	40	36	27
CGACGCCCTGCCTCTT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GTCGTTTGTTATCGGG	alt_867_negative	14	16	12	13	14	9	10	14	11	11
TGTCTCCGGCTAGCCA	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CTATATGTGTTCGACA	alt_867_negative	0	7	4	6	4	2	5	7	9	2
CTAGGTAGGAATTACA	alt_867_negative	21	21	16	24	15	17	32	18	32	15
GGGTTGGAACGCTGGA	alt_867_negative	37	51	51	35	50	41	63	29	49	34
ATGTAGCGCACCCACC	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GGGCCAACCCTGGATC	alt_867_negative	7	28	11	13	26	10	14	7	13	10
CTAAGTATCAGCGCCT	alt_867_negative	12	21	24	12	17	11	17	17	21	15
ATATGGTCTAGTCTAG	alt_867_negative	37	43	41	44	45	26	48	35	52	35
CGTCAAATCAATCTTT	alt_867_negative	45	52	49	40	45	30	45	38	39	38
TATCTATTTTTATGTG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GCACTGTATCTTTGCG	alt_867_negative	17	36	26	22	34	20	39	37	46	26
TACTAAACTACTCTGT	alt_867_negative	23	31	26	33	30	19	25	14	31	19
CACTTATTCAGGTCGT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TTGCCACGCGAATGTG	alt_867_negative	17	27	24	27	27	29	44	12	45	9
CTTTGTATATCGTATA	alt_867_negative	23	27	31	22	26	22	24	15	22	21
CTGCTGTACCGCGTTC	alt_867_negative	43	49	55	41	66	30	64	47	85	36
CGCTCGGCATGGCCGT	alt_867_negative	2	2	0	6	1	0	1	2	6	2
CACTCTTGTGCGTTAT	alt_867_negative	32	31	28	36	53	38	51	30	45	27
TAAGTGCAGATTCGCC	alt_867_negative	30	30	41	31	31	30	43	22	39	19
TTAAGTTACCACGATA	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CTAGTAACTACGGTTT	alt_867_negative	1	3	1	0	2	0	2	2	0	0
TCCATTCAGTTTCTAG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GGGGAGCGATATGGAC	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GTCCATTAAGTTCGTG	alt_867_negative	22	29	30	19	26	21	26	16	21	18
ACCTGCAGCTTGTGTC	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TTAGACCATACCTACC	alt_867_negative	21	57	16	13	61	20	57	18	66	23
TGTCTCAATAGGATGT	alt_867_negative	6	14	9	7	17	5	7	3	9	10
AGTATGTATTAACGTG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CTCTCCTTGAATCCAG	alt_867_negative	51	192	72	64	183	56	210	63	196	49
GTGATCCAGGTTACTG	alt_867_negative	44	70	57	39	60	40	71	48	65	34
GACGGTTGTGAAAATT	alt_867_negative	49	42	45	37	73	38	40	43	54	42
TATGATATTGTGTGCA	alt_867_negative	11	22	16	15	13	20	27	13	30	16
AGGGACGCAATTTGGA	alt_867_negative	35	38	30	40	25	23	42	36	41	38
ACGGGTCCTTATGTTT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CATGTATCTTCGCTCG	alt_867_negative	24	33	38	29	40	27	36	18	37	25
GGTTTGTGTTGTATTC	alt_867_negative	34	35	27	26	36	31	36	32	35	23
CGTAAAGTTACTCAAG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
AACTGATTCTTGCAGG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TCTTGATCGAGTCAAA	alt_867_negative	5	2	6	2	7	5	6	3	4	3
AGCCACTCGCATGTTC	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CGATGATCCTTCCTGC	alt_867_negative	59	52	54	43	51	49	52	52	74	48
TAACTTCTTCTCGTGC	alt_867_negative	17	15	12	11	22	21	16	8	16	15
GTTGCTTTTATCGAAT	alt_867_negative	2	8	10	2	11	5	5	2	3	2
ACATCTGAATTGTGGC	alt_867_negative	8	8	17	8	18	11	11	20	14	5
GATAACGCACCCACTA	alt_867_negative	114	222	161	157	206	175	193	162	210	159
CCTACTAATCTTCGTC	alt_867_negative	92	122	112	83	109	92	114	103	117	85
GGTCGCCTTTACACTC	alt_867_negative	8	10	12	3	10	7	9	6	9	7
GGAGATAAAAAGAACC	alt_867_negative	77	121	98	90	108	94	127	67	141	67
CCGCGTGTATTGTTTT	alt_867_negative	21	22	20	15	35	22	24	25	26	24
AAAGGAATCAGGAGTG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TGTCCTGATTCGATTC	alt_867_negative	10	5	10	7	7	6	19	8	10	15
GGAACCCCCAGGTACT	alt_867_negative	103	111	118	92	118	110	109	97	109	73
GATTCAAGTTTGAACT	alt_867_negative	16	16	16	18	13	15	21	13	23	14
TAATGGTAAACTGCTA	alt_867_negative	0	0	0	0	0	0	0	0	0	0
AGGTAGCGATCGGGCA	alt_867_negative	26	16	34	12	17	24	24	20	20	25
GTCGGTGTACTTGATC	alt_867_negative	150	58	190	148	50	111	51	126	40	143
TATTAACTCGGTATAC	alt_867_negative	33	19	17	28	26	19	30	19	24	11
TTGAAGTATCGGTTCA	alt_867_negative	66	74	69	60	73	50	79	50	93	53
CTTATGCTAAGCTCCT	alt_867_negative	33	34	38	31	31	30	42	33	44	29
ATCAGGGTGGATTGAT	alt_867_negative	12	16	19	13	20	21	7	14	18	13
ACATGGGATATTTCTG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CCGGTCTTACTGCGTA	alt_867_negative	16	41	39	22	31	25	29	17	39	14
CCGAAGCCGCCCGTTT	alt_867_negative	21	36	30	34	35	30	36	29	41	25
CATAGTCAAGGGTCTT	alt_867_negative	50	59	50	56	64	37	76	37	68	33
ATACGCCCGGTGGCCA	alt_867_negative	34	29	30	21	26	25	34	29	30	18
AACTGAGTTTGTTTCT	alt_867_negative	2	6	1	3	7	8	5	6	10	1
AAAGAGGTGACGAAAT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CTATGTTGTGAACTTC	alt_867_negative	64	55	87	60	75	47	51	49	56	45
CTGTCGTTCTTGCAAT	alt_867_negative	11	26	16	18	23	14	26	12	19	13
AGCAACTGATCTATTC	alt_867_negative	67	59	60	48	72	52	60	31	70	45
CTCTCCCTGAGTTTAT	alt_867_negative	8	7	12	9	11	13	21	8	14	12
AGCTGTGATTAGTATC	alt_867_negative	104	127	144	101	122	111	134	98	149	97
GTGGAGCCGGAACTCT	alt_867_negative	9	18	12	15	12	17	10	11	19	9
CCTGCATGATCCGCCC	alt_867_negative	41	45	39	34	51	46	63	43	60	35
AATTATCGAGGTCTTA	alt_867_negative	59	51	72	54	65	59	75	36	70	53
GGCGTGTCTTCGCAGC	alt_867_negative	16	14	13	9	17	19	9	13	9	9
TACTGAATCGGCACTA	alt_867_negative	25	23	23	26	19	13	30	24	23	10
CGGTCGTAATCTGGGT	alt_867_negative	5	10	13	2	12	8	8	9	6	4
TTTGTGTTTGTGTGAG	alt_867_negative	98	153	150	78	165	100	172	81	181	94
GGTCCATTTGAGATCC	alt_867_negative	46	89	98	71	99	66	92	70	108	57
TGACTTCTTACGCGCT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GTCCGTAGAAAGGCTA	alt_867_negative	35	33	47	31	25	29	46	31	39	14
CTGGAGCCAGTTACCA	alt_867_negative	51	55	64	51	60	51	76	47	69	49
GACTATTTTCGTTCTA	alt_867_negative	24	15	25	15	20	18	18	14	19	10
ACGTTAACTCTCGCAG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TTGTTCTCCAGTGGTA	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TGGGATGCGTATTAGT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TTTGATTCTGCAAAGG	alt_867_negative	4	5	6	7	6	6	5	6	11	6
TCCGATACGCAAGGGT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TGGATAGATTGTGTAG	alt_867_negative	27	20	28	14	22	20	30	26	21	15
CCCAACGGTTGAAAGT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GCCAACTCATGAAGCA	alt_867_negative	18	26	23	16	33	28	39	27	45	20
AAGCTGTGGATCAATT	alt_867_negative	7	21	10	14	16	8	12	4	12	10
CCCAGCGCAGTTTCAA	alt_867_negative	15	50	30	27	35	21	52	29	43	20
ATGGATTCTTGGGTTT	alt_867_negative	5	2	10	7	5	6	9	4	5	7
TGGGGTTCCCGGAACA	alt_867_negative	22	22	24	32	19	10	19	29	34	23
ACTAGGTGTTGCACGT	alt_867_negative	27	57	48	41	49	31	66	38	64	25
CCGTGCTGTAAAAATC	alt_867_negative	9	12	1	5	4	2	8	3	7	2
TCCCGCCTATGGAACC	alt_867_negative	5	6	10	5	6	6	13	5	6	3
ACTACGCCCGAGCGTT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CTCTCGCCTCAGTATG	alt_867_negative	70	118	104	67	109	69	148	71	125	65
ACTTATCGTGCGTCGG	alt_867_negative	3	12	6	10	5	5	4	6	11	7
TCTTGATTGAGTAGAT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
ATCCTCGCCCCCCCGT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TCGCGTTTACCTCTAT	alt_867_negative	13	23	22	23	29	18	18	13	26	12
CTAGTGTTATCTCTGT	alt_867_negative	5	10	6	6	12	8	10	4	7	1
GAAACGGTCTTTCGCG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
ACGCAGTCTGCAAACT	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CATAATTTTATCGCCT	alt_867_negative	25	39	30	36	42	30	27	30	30	25
TAAGCACCGTGGCCCT	alt_867_negative	15	4	10	13	20	10	16	12	11	13
TCCCGTACATAAGTTA	alt_867_negative	0	3	2	5	0	2	3	5	2	2
CGTTTTGCATTCTCAG	alt_867_negative	17	25	21	19	32	19	30	14	35	20
CTGCGGAAAATTTCCC	alt_867_negative	21	15	32	24	24	18	28	23	22	14
CCAAGTGGCGTTCCAG	alt_867_negative	11	49	38	27	63	31	81	23	77	23
TGTGTCTGAACCCAAC	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TCGGTCTGGATCGAAA	alt_867_negative	12	30	22	6	44	10	21	19	33	10
AAGATTTAGTTACGGG	alt_867_negative	27	24	25	28	25	18	28	22	26	21
ACCTCAAATTGGCTGG	alt_867_negative	43	73	54	54	55	34	62	39	44	33
TTCAATTGGTCCTATT	alt_867_negative	19	21	19	21	22	18	19	20	34	15
TATCTCGACGATGCTG	alt_867_negative	5	11	8	12	6	12	8	7	14	11
ACCTGGTCTATATGGC	alt_867_negative	0	0	0	0	0	0	0	0	0	0
CAGCTATTTAGGTATT	alt_867_negative	16	21	20	26	38	17	29	24	32	25
GTGGGACTATCTACTG	alt_867_negative	0	0	0	0	0	0	0	0	0	0
TGTCGGACCAGCTTCA	alt_867_negative	41	49	49	49	53	45	53	44	61	46
CGGAATTCCCGCGCAA	alt_867_negative	67	66	56	52	51	53	66	60	46	49
TGAGAATCCCGACTCT	alt_867_negative	10	25	28	28	20	22	30	15	26	19
GGGTTGGAACGCTAGA	alt_867_negative	13	14	17	3	15	9	12	15	13	11
ATGCTCGCCAGAAATA	alt_867_negative	71	95	89	72	87	87	86	67	96	58
TGCGTGGATCCTGTGT	alt_867_negative	13	10	10	7	7	9	7	6	7	11
GTACAGTGACTTGCTA	alt_867_negative	0	0	0	0	0	0	0	0	0	0
GTATACCAATTTCACT	alt_867_negative	27	45	29	37	29	30	35	17	23	20
GAATGATCCCCGATTT	alt_5726_new	5	9	11	14	9	8	16	7	15	10
TACCCTATGCAGAGCC	alt_5726_new	17	21	24	20	24	21	26	15	26	28
CCGGTATTTAATGACC	alt_5726_new	36	31	30	30	37	24	50	31	42	27
AGTCTGATATTTAACG	alt_5726_new	8	7	6	5	7	11	7	1	10	8
TTTCTTTTAGTTGCGG	alt_5726_new	16	9	19	8	8	14	8	18	9	8
TAGTCTTCTTAGGCTC	alt_5726_new	5	5	9	6	4	2	7	3	2	3
ATGGACTACTGGAGCG	alt_5726_new	4	1	8	7	5	0	7	5	8	7
CATGCTTTTTAGATTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
ACCGGACCTTAGCTTT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
AATAGGACCGCGTATA	alt_5726_new	7	14	13	18	11	14	22	7	25	10
GTGCATGTACTGGTTG	alt_5726_new	15	19	23	20	21	12	12	5	21	10
ATTGGCGGTCATCACG	alt_5726_new	71	53	56	52	56	50	44	62	51	48
CGGCAGGACCCACAAC	alt_5726_new	331	360	382	325	338	299	318	298	309	246
TTCCGCCCTCCTGACG	alt_5726_new	10	11	11	16	20	14	14	8	20	14
GTTCGGCCGGTAGATA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CCGAAACATGCCAGCA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TTCACGGCAAACATAG	alt_5726_new	42	53	55	45	66	31	49	44	65	31
GCGCTCGTAGGTGGGT	alt_5726_new	5	13	10	5	8	6	11	7	12	7
TTGCTGTGGCATTGAG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GATTGTGTGATTGTCT	alt_5726_new	53	115	76	75	82	46	105	52	121	57
CTCCAGAAAAACTTCA	alt_5726_new	9	7	10	7	9	4	7	9	8	4
TCTCACACTTGCCAGG	alt_5726_new	13	20	23	23	21	26	18	22	23	10
TTGATACCTAATGCAA	alt_5726_new	18	20	25	18	37	15	27	15	19	17
ACAGTTAGCCCCGTTA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TCAAATTTTAGTCGTC	alt_5726_new	3	10	12	20	10	9	8	12	17	7
TCGCTTTGAAATCGTA	alt_5726_new	126	146	156	124	141	117	138	111	149	99
TCAGTCCAATATTCTG	alt_5726_new	7	5	10	12	4	5	7	8	4	7
GTATGATGTTTTGTTT	alt_5726_new	51	54	48	59	30	58	38	43	51	35
CACAGATCTCAGGCTT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CTGCGAATCGTGTCTG	alt_5726_new	16	34	31	24	30	23	35	26	23	15
CGTGTCGGGTTTTTTT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TCCGGTTGTCAAATCG	alt_5726_new	124	152	158	120	189	168	144	127	222	141
GCTTCTCTTCACGTCG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CCCCTCACCGATGTAT	alt_5726_new	4	8	3	4	4	6	6	8	5	4
GATAAGCATTGATCTT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TTGCTCTCCGGTCTTC	alt_5726_new	8	4	5	4	3	5	16	5	16	5
CAGATTCGATGTGTCT	alt_5726_new	0	1	1	0	0	0	0	2	0	0
TTTAGGCTGCCCTTGT	alt_5726_new	4	5	2	5	4	2	4	2	4	3
CAGTAGCACCCAATCT	alt_5726_new	21	20	16	12	10	17	18	17	28	12
TATTCCAACGTTAGCG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GTGTAAGGTAGTCTTT	alt_5726_new	35	38	41	46	41	37	39	35	52	35
GTGACAGTAGGGCGGC	alt_5726_new	21	19	26	23	14	19	29	6	21	14
AGCTAGTGAAGTAGGA	alt_5726_new	8	5	13	14	9	10	10	16	10	10
TTAGGTTATTGCCTGG	alt_5726_new	8	13	6	6	9	7	11	7	7	12
CCGTGTTTCACTTCGG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TGATTTTGAGAGTTCG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
AAAAAATTTTCGCGAC	alt_5726_new	0	0	0	0	0	0	0	0	0	0
ACGGCCATCTTTGCAA	alt_5726_new	12	24	23	21	22	25	16	12	15	22
AATGCAGCGCGCGTTC	alt_5726_new	15	14	23	19	17	16	19	16	19	8
TCTAACGAATTTCATG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GGTTCTCTACAAGTCC	alt_5726_new	7	7	8	11	11	6	12	4	16	3
TCCTTCAACGCTGTGT	alt_5726_new	31	49	41	38	49	26	66	36	53	39
GGTAGTCCGATTCACA	alt_5726_new	42	31	29	29	26	28	44	22	28	31
TACGACATTAACATTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CTGCCTGAGCCAGTAA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GCGAATATATGTAGCG	alt_5726_new	25	24	28	29	23	23	34	22	18	25
GGGTGCAACATTGCTA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TATTGTTGTGCTGATC	alt_5726_new	1	2	7	1	5	5	3	8	4	5
GGACAGGAACATCCGG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
ACCTGGCTTTCTGCTT	alt_5726_new	8	16	12	11	17	9	8	8	20	11
AGTTCCATTTCGAGGA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TCGGCGGTGTTCCGTA	alt_5726_new	52	67	82	45	59	47	69	51	66	57
GTTTTGTCTCAAAAAT	alt_5726_new	36	31	40	45	43	33	42	32	48	22
AAGAATCTATTAGGGA	alt_5726_new	7	9	9	6	7	6	9	9	7	8
CACCTCTTATTTTTAA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GTGACATTGTGTGGCC	alt_5726_new	21	33	29	25	38	26	41	26	26	22
TTGTTGCATATCCGCT	alt_5726_new	11	3	7	9	0	8	12	5	3	6
CTGACGGGATTCCGGC	alt_5726_new	5	2	6	4	3	5	8	6	1	3
GTGGTCCGACCTCGAA	alt_5726_new	3	6	2	7	11	3	4	3	4	4
ATTGCCTCTGGGTGTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CCGCCGGTTATACTTT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TCTTACTAATGGTTTT	alt_5726_new	20	18	17	10	21	22	11	17	8	18
GATTACAGAATGTAAT	alt_5726_new	267	277	318	251	280	281	303	216	296	219
TGTTGGTTTCGTTGTT	alt_5726_new	13	18	12	13	15	17	9	14	15	7
GAGCCTAACCGTAAAT	alt_5726_new	10	8	8	6	5	3	6	4	4	7
TACGGGTCGGCTCCTC	alt_5726_new	45	49	41	43	40	31	37	25	37	28
CGGATACTCAGTGACA	alt_5726_new	60	72	45	56	69	62	69	63	71	60
TGGCAAGGAAAACGGG	alt_5726_new	29	18	42	24	32	36	28	29	30	23
CATGAGGTGGTATAGA	alt_5726_new	11	7	18	8	16	10	9	8	16	11
ATTACATTGTATTATT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TCCCAATGTTGACTAT	alt_5726_new	5	5	7	2	6	7	9	6	5	3
CTTGCCCTTGTATGTC	alt_5726_new	150	190	166	144	185	128	176	145	176	134
AGGCTTTGCAAACATC	alt_5726_new	12	13	21	16	7	7	8	15	9	10
AACTGTTTGGTTCCAC	alt_5726_new	11	10	15	21	11	9	11	8	9	7
CGTTCGGCAATGGAAG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GGTCCATATTGCGCAT	alt_5726_new	1	0	0	1	0	0	0	1	0	0
ACGGTTGTGCACCGCT	alt_5726_new	12	2	18	6	14	10	6	6	17	10
CGGCAGGCCCCACAAC	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TCCCTTACAACATATT	alt_5726_new	4	20	14	23	14	13	16	18	14	16
GGTATGGACGGTTGTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GAACTGATATCGTTCG	alt_5726_new	14	14	9	4	9	3	22	8	7	5
GTTACCCGCCAATGCT	alt_5726_new	16	10	18	13	11	16	14	8	12	10
CGGTCTTCTACGACCG	alt_5726_new	1	2	0	1	0	1	0	4	0	2
CACCCCTGCATTTGTC	alt_5726_new	22	25	25	13	29	21	31	9	33	22
GCAAGAATCATTAAAG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TTTGTGCCCCTCTCGG	alt_5726_new	47	37	42	32	45	40	30	34	28	31
GCCGGGAGACAGGACT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GTAGCGCACGTCCGTG	alt_5726_new	18	26	30	18	16	19	29	14	19	24
ATACGCCGATAAAGTT	alt_5726_new	31	30	23	21	31	23	29	18	31	27
GGCATCCGTGGTAAGG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
ATGTTACCCCTAATTA	alt_5726_new	35	54	48	47	51	41	41	39	52	41
TCGGTTTGAACAAAAT	alt_5726_new	6	9	19	10	15	13	21	4	6	7
TCTAAGAAGTGCGTAC	alt_5726_new	59	81	94	61	85	59	61	49	75	72
AATACCTACTTTACTT	alt_5726_new	8	5	7	6	3	4	8	3	9	11
ACAATCGACCAGTACT	alt_5726_new	15	12	18	15	19	12	22	12	14	18
CGTTTTTTTTAATCTC	alt_5726_new	0	0	0	0	0	0	0	0	0	0
AGGGTACTCAGGCATC	alt_5726_new	5	12	8	9	12	9	11	10	8	6
CTTTATCTGTCTTTGT	alt_5726_new	61	60	69	72	65	55	52	61	75	57
CTTGGCCCCGTACGCC	alt_5726_new	19	20	20	18	21	18	21	12	24	16
TTCTGTTTGTCCCTTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GGCTTCTATTCATTTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
ACCTCCCTAAGGAGTC	alt_5726_new	1	6	2	7	11	7	6	2	3	5
AAGCTTTCACTTTCAT	alt_5726_new	2	1	1	2	1	0	0	4	0	2
TCAGCCTCAAGGCAGC	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CACAGGTACGTACGTG	alt_5726_new	14	29	19	23	25	15	17	17	30	18
AGGTCCCCGCCCTTTA	alt_5726_new	8	16	13	6	12	11	17	8	12	7
TCGGTGTATGGGAAGT	alt_5726_new	20	11	23	20	19	16	9	15	19	19
ACTCCACAGGGCAGCG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CTAACGGGATTCCGGC	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TCTCTCGTGACTACGA	alt_5726_new	20	21	26	21	14	18	17	22	26	24
GCACATTGTATTATCA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CAATGCACGTCTATTT	alt_5726_new	15	24	30	26	22	16	34	29	33	21
GTCCCGAAGGGAATAG	alt_5726_new	22	40	40	34	39	36	36	39	28	34
TCGGTTTGAACACAAT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
ACACTGCGCATGTCAT	alt_5726_new	10	9	10	3	14	11	15	11	10	6
TCACGTGCTAATTGAG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GATAAGGGGGTTTAGC	alt_5726_new	26	39	54	40	49	47	44	31	38	32
ATTCTCAGTGAGTTTT	alt_5726_new	6	9	5	2	5	3	5	7	5	6
AGCATAACGTTTTAAC	alt_5726_new	23	34	17	22	26	26	30	32	21	14
TGCGTCACTGGGACTC	alt_5726_new	7	9	12	17	7	7	12	4	6	13
ATAGTACTGATAAGTC	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TTATACTATGCCTCCG	alt_5726_new	17	4	24	22	18	16	17	12	12	17
AGAGGTTACCTACGTA	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TAGCCTGTCTTTCCTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
GCTTTCCTTTATAAGT	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CGCAATTCTTTCCGCT	alt_5726_new	69	40	70	66	48	70	43	69	60	55
GTCCTACATTGGGGTC	alt_5726_new	35	32	35	25	24	37	35	31	36	25
TTAGATATGACGCACT	alt_5726_new	18	23	29	31	19	30	20	26	28	17
ATCGCCTACATCCCTG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TTGAAAAACTATATTT	alt_5726_new	38	34	46	48	26	31	36	47	22	29
TACTATAAGGCTTCGC	alt_5726_new	17	15	17	13	8	15	20	14	29	17
GGGCGCTGATCGGTTG	alt_5726_new	79	87	122	84	87	86	105	79	95	76
GTATAGTGGTACAATC	alt_5726_new	0	0	0	0	0	0	0	0	0	0
CTATCTTAGCTTTCAG	alt_5726_new	0	0	0	0	0	0	0	0	0	0
TTCCTAAGGTCTATAG	ref_292_RC	49	24	52	38	22	47	35	31	25	30
GTTCTTTTCTATTTGT	ref_292_RC	32	19	45	34	20	31	21	45	22	26
TCAGACCCGACCGTGT	ref_292_RC	96	80	141	128	87	120	82	123	90	82
TACCGTTTGTCTATGT	ref_292_RC	117	121	94	88	116	75	108	80	108	69
TAAGATTGGCCAAGCT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CCCCAATCTTAGAATA	ref_292_RC	0	0	0	0	0	0	0	0	0	0
GCCGAATGTTTTAGTG	ref_292_RC	163	104	191	175	110	153	134	164	123	148
TTCTTAGACGGAACTT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
AGTTTGCGCCAACAGG	ref_292_RC	82	68	139	124	47	95	64	98	59	89
GATTGTGACTCAGAGG	ref_292_RC	71	44	75	64	41	46	50	76	49	52
TAACATTCCTATGTAG	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TCGGTTTTGAAGTACG	ref_292_RC	289	195	357	355	179	259	200	297	198	226
CATATGTAGTGCACCA	ref_292_RC	12	16	31	18	19	20	16	22	20	12
CGCTATGTTTGCGCCC	ref_292_RC	32	25	47	50	45	36	25	48	43	39
CGTTATGCGCAGCAGA	ref_292_RC	11	25	26	6	29	15	25	10	24	7
CACGGACATGGCTTGG	ref_292_RC	51	35	57	56	34	36	37	46	37	39
CTTTCTGATCCCGGGG	ref_292_RC	25	12	26	28	17	21	16	15	14	21
TGACGTGTGACCAACT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CGGAGACGCACGCTTA	ref_292_RC	103	61	118	102	66	110	64	84	85	80
GCGCCGCAGTTGTGTG	ref_292_RC	2	2	8	6	1	2	2	3	5	3
CTCCATTTGTGACTCC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CCGTCCCACGTTCCTA	ref_292_RC	151	151	226	189	139	170	176	186	161	141
TCTTTTCATTCACTAG	ref_292_RC	94	74	115	108	85	83	76	119	79	103
TGTTGCTCCATCGGCC	ref_292_RC	149	71	191	151	76	133	81	151	62	136
GTTCGTCGGGCCCTAC	ref_292_RC	117	62	138	110	73	116	72	91	92	92
AAATACCTCGCCCTGA	ref_292_RC	794	424	949	817	444	795	408	732	496	694
TATTTTTTCATGTGGC	ref_292_RC	90	30	105	98	63	80	41	80	53	82
GGTCTAACCCGTTTTC	ref_292_RC	67	23	93	81	47	64	41	55	48	69
TGCTATATCTCGTAAA	ref_292_RC	25	15	27	28	15	16	18	25	12	18
ACCTATGCACATGTCG	ref_292_RC	18	12	16	10	6	10	8	19	5	9
GCATTAGGTTTATGAT	ref_292_RC	26	11	32	34	21	27	21	33	9	28
GGCGTCTACCATATAG	ref_292_RC	77	46	111	79	49	55	56	82	50	63
CGCAAAATAGCTTGGG	ref_292_RC	22	16	30	32	12	33	18	25	24	21
TGTGAGTTCTCTTAGA	ref_292_RC	90	62	105	109	42	98	68	77	69	84
AATAACCACAAATTTA	ref_292_RC	41	13	50	42	25	29	25	39	24	36
CCACTGGTTTTTTTCT	ref_292_RC	3	5	5	2	14	2	6	4	4	2
CAAATCACATCCTCAT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TTTCAGTCAGACTTGA	ref_292_RC	16	12	30	10	14	20	13	16	13	8
GCTTGGCGCCGAAGAT	ref_292_RC	69	23	65	69	43	61	26	70	30	51
GGCCCTCTGATTCTAG	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TCAGAAATGCTGGGGC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
GTAAATTGTCCTAGGA	ref_292_RC	594	322	739	606	302	532	357	523	333	525
TCGACGCGGTACAGAT	ref_292_RC	20	16	18	18	7	15	9	19	10	15
CATGCCGCTATCCCTC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CAGCCCCGGGCGGCGA	ref_292_RC	0	1	2	2	1	1	4	0	0	0
GTTACGCTTACAGTCT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CCTTGTAAGGACCGAC	ref_292_RC	10	38	14	21	48	16	45	19	53	11
TAGGCAGCTTTTTTTC	ref_292_RC	16	7	25	12	11	18	13	16	15	29
CATATCTAGGGACATT	ref_292_RC	89	54	107	98	61	85	71	105	76	64
GTTACGGAGTGGCGTG	ref_292_RC	43	32	42	52	29	35	25	46	40	24
ACTAACAATATGGCCC	ref_292_RC	227	142	307	279	144	239	145	267	170	224
TCAATTGTTCTTCTGG	ref_292_RC	197	122	276	206	117	198	141	203	133	161
AAATTTCGTATGGTTG	ref_292_RC	8	2	18	7	6	9	3	9	7	12
CACCCTCACTATTTCG	ref_292_RC	52	49	61	43	26	42	30	46	32	41
CACTTACGCAATGTAC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TTAATATCGACAAAGT	ref_292_RC	715	395	807	695	419	693	439	610	461	575
TCGAACGTCGAGACAC	ref_292_RC	278	185	302	311	210	233	180	256	188	253
AAATTGAGTCGGGCTT	ref_292_RC	84	32	69	50	37	53	35	69	40	41
GATGCCTATATTCAAC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
GCTGCTAAATTGCTGA	ref_292_RC	29	8	27	19	26	19	15	21	5	19
TCGGGGCTTTTGACGA	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CTGTACGCTTTCGCTG	ref_292_RC	8	21	5	9	7	9	10	12	14	2
ACGATTGTCCTAGTAT	ref_292_RC	435	244	530	472	326	432	301	419	290	359
ACTAAATCAGTTGCCC	ref_292_RC	387	244	490	396	230	359	240	335	266	329
TATGTCTGTTCCTGGT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TCTTCTATACGCACGT	ref_292_RC	13	8	9	18	7	8	10	15	6	7
ATCAGACGACAGTCTT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
ACATAACTCTACAAAG	ref_292_RC	26	20	24	50	11	25	22	30	6	33
ACGATTATCCTAGTAT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
ATCAGTTTGCGTCTTG	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TCGGAGTTCCACATTT	ref_292_RC	55	34	72	47	34	52	31	56	38	58
CATTCCAGTTGCACCC	ref_292_RC	68	36	76	68	41	46	47	61	33	46
ACTATATCGTATTGAC	ref_292_RC	139	60	178	156	91	148	85	177	100	135
AATAGTGACCGGTTCC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TAGAACGTCGAGACAC	ref_292_RC	1	0	0	0	0	0	0	0	0	0
GTTACTGACGTCGGTA	ref_292_RC	2	1	1	2	2	0	3	4	1	8
TCTAGGGCCCCTCTTG	ref_292_RC	175	102	152	169	87	145	100	157	103	114
TCACGGGAGTGCAGAT	ref_292_RC	11	9	30	26	8	24	13	19	6	13
GATGTCTCGCCTGATT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
GCCCTCTTTGCTGCTA	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TGATCGTTCAGATATA	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CAGCGACTCGTTCGAT	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CAGGTCCGCATAAGTC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
AGGTATTATCGTTATG	ref_292_RC	0	0	0	0	0	0	0	0	0	0
ACGCGTACTTTGATGC	ref_292_RC	129	88	156	133	89	126	89	119	70	121
AAAGGGAGTCCAAGCA	ref_292_RC	86	38	106	107	49	87	50	77	44	71
TTAATATTTCGTAATA	ref_292_RC	0	0	0	0	0	0	0	0	0	0
GTTCGGACGAGCTATA	ref_292_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGACTCATAATT	ref_292_RC	376	245	433	374	198	347	257	300	230	295
GTTAATTTTTACTCGA	ref_292_RC	134	93	160	165	109	135	102	134	98	121
GCGACACGTGTGGTGG	ref_292_RC	82	36	68	84	45	86	48	70	62	58
GAGTCGTACTTGGTTC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CGATTCCCGCGAGCTC	ref_292_RC	34	23	44	36	23	35	19	42	21	29
TGGGTTCGCGATCTAC	ref_292_RC	2	3	10	5	3	4	9	6	3	9
TTTGCGCTGAAATTTC	ref_292_RC	0	0	0	0	0	0	0	0	0	0
AGCATCTCACTCGATG	ref_292_RC	52	20	46	50	27	55	34	54	31	34
TCTAATTGCTACACGT	ref_292_RC	14	6	12	15	5	15	5	13	12	14
AGGTTAGTGCTTATTC	ref_292_RC	146	134	219	183	121	169	147	178	143	167
TATGGAACGTTTCGCG	ref_292_RC	0	0	0	0	0	0	0	0	0	0
CGTATCTTCTCGATAA	ref_292_RC	14	10	15	7	7	12	5	9	7	10
TAGGTCAAGTGTATCA	ref_292_RC	58	47	79	69	49	65	39	69	46	65
TTTCTGAGGTCGGTAA	ref_292_RC	3	5	10	7	4	3	5	3	3	6
TGGGGTCGGCCGTTAG	ref_292_RC	220	162	233	227	187	168	180	186	187	180
TACGCCCTAATTTCAT	ref_292_RC	5	2	5	1	0	2	1	3	1	3
GTACAGTTAGGTGGTA	ref_292_RC	14	7	14	13	12	12	11	7	1	8
GTCATGTCTGAAGAGG	ref_5741_new	10	21	9	16	25	8	20	11	21	12
AGGAGTGTGGTTGTTG	ref_5741_new	1	8	8	6	7	4	2	2	20	2
TCCACGCTAACAGACC	ref_5741_new	22	78	33	32	80	18	80	24	77	21
CGGTTGGTGTACAGGT	ref_5741_new	117	160	123	127	166	112	181	105	186	95
GAGTGCTTGCTCAGGG	ref_5741_new	15	32	23	17	37	23	19	17	27	19
TACATAGAAGATGGAG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
AATAGTAGTTCTTGCA	ref_5741_new	11	6	7	9	12	4	6	4	12	4
GGAATTGCGGGTCCCC	ref_5741_new	25	55	43	30	41	38	53	38	38	36
CTTATTGGTACTCCAC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GTAATGTTACCCTGCA	ref_5741_new	23	34	34	34	36	18	35	27	30	22
TGTACCATTTATCTTT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GTACCCCACATCCACC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
ATTCTGCGATGTTTAA	ref_5741_new	6	6	10	4	12	3	5	4	19	5
TATCCTCCACGATGGC	ref_5741_new	57	61	76	53	66	33	72	43	80	49
GACCTAATAGTGGCTT	ref_5741_new	9	6	1	1	12	6	18	6	2	3
CACAGTGTTATCAGCA	ref_5741_new	20	31	26	23	25	20	37	19	17	14
ACTCCAAGCTGGAATT	ref_5741_new	16	25	25	11	26	10	23	10	12	5
ACGCAACAGCTTGTTG	ref_5741_new	8	11	11	9	16	13	13	6	23	7
GGCATTTAATGCTTGA	ref_5741_new	10	14	23	11	22	15	32	26	19	12
TTCGTACCTTTGCTCT	ref_5741_new	16	33	16	19	27	20	19	15	26	15
TCCAGCACCCCGTTAC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GGGCTTATGAGCTTTT	ref_5741_new	14	17	4	7	8	4	9	9	10	5
TGTTTTTTATTGCTTG	ref_5741_new	1	4	7	1	3	2	6	0	4	2
CACGCCCGTCTAGTGC	ref_5741_new	22	46	36	22	45	23	55	18	55	29
AAATCTACCTATGAGA	ref_5741_new	7	11	20	13	20	12	9	8	28	16
ATTACGTAGTCTCATT	ref_5741_new	10	14	21	7	15	8	21	9	18	12
GTTACTTTGGTTTCTA	ref_5741_new	5	11	11	8	14	2	9	1	15	5
CAATGGCCATTGGTAA	ref_5741_new	16	14	16	15	19	23	21	11	15	14
AACTAGGGACAACTAG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
ATGGAGATTAGTTGAT	ref_5741_new	20	17	18	9	17	22	16	8	21	13
CCTAACGTATCCACCT	ref_5741_new	3	8	3	2	11	3	11	3	12	0
TGTTCACACCCGCAAG	ref_5741_new	12	20	9	10	14	9	21	13	14	8
TCGGGAACTTATCAAC	ref_5741_new	5	5	4	4	3	4	7	1	6	2
CTGCTCCAGGGATTAC	ref_5741_new	27	36	42	20	34	15	37	20	49	22
CATGCTCAGCGGTTTG	ref_5741_new	10	38	35	31	37	13	50	24	59	15
ATCGCTGCTGTTCATT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CTTCTTTTTTCACCAC	ref_5741_new	28	44	34	27	34	24	53	26	58	41
GTGGGGATCCTTTACA	ref_5741_new	91	122	99	108	145	91	155	130	157	88
CGTTCTTCTACCCAAA	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TTTTACCCGCAAATAC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GTCTATGTATACCTGC	ref_5741_new	22	20	11	12	22	15	29	17	27	7
CTTTGTCGGTCCCGGA	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TAGCCCCACACCGAGG	ref_5741_new	15	23	19	10	33	17	28	7	32	16
AATCTCCTTGATTCCC	ref_5741_new	2	6	5	3	8	6	2	3	5	2
GTCGTGTCGTTACTTG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CACTTAGTTTGTTGGA	ref_5741_new	5	12	3	1	4	2	11	4	3	6
AGTACGTACTCTGTTT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
AAATCGTCGGTAGCCA	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TTCATAGATAGTTACA	ref_5741_new	13	19	19	21	23	11	25	11	29	16
CATCTCGCCCAGCGGC	ref_5741_new	1	1	3	3	1	3	2	3	1	3
ACTTCGGCCATAATTA	ref_5741_new	7	17	8	12	11	8	15	11	16	12
AGCGCCGAACCTCACC	ref_5741_new	8	16	10	13	20	7	24	10	36	12
CTTCTTTCTGTGCCTT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TTTCTGTTTATCTAAT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GCAGCACTTTGAAAAT	ref_5741_new	10	13	10	11	9	7	20	12	19	14
ATACATGTATCGGTGT	ref_5741_new	12	15	20	9	15	8	21	10	20	10
CTATTTGTGTTAATCG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CCGGGATTAGACTCGT	ref_5741_new	48	72	48	42	69	45	84	52	78	63
ACCGGCTGTGAGTGTT	ref_5741_new	30	32	20	25	22	17	42	21	35	18
TGCCTGTTGTTTTGGA	ref_5741_new	39	60	50	36	62	46	67	35	54	25
TTTCGTCTAGGATTTC	ref_5741_new	11	8	10	12	14	12	14	18	14	15
GCCCGAATTCCTTGAT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TTGATATAACGTATGG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CCGGGCCGATATCTGT	ref_5741_new	59	101	77	75	114	60	122	67	135	53
GTGTCTGGCTACTGGG	ref_5741_new	19	21	28	20	39	19	45	19	43	13
TACGAGCCTTCCAGTC	ref_5741_new	38	66	49	35	54	44	46	23	54	35
TCCATTTCTTTATAAA	ref_5741_new	15	13	13	12	13	7	12	10	20	10
AGGTAAACAGGGGGTG	ref_5741_new	16	34	25	21	28	24	42	18	24	18
TACAGTGGTATTTTTA	ref_5741_new	129	196	125	122	191	100	219	108	194	106
GAGCACTCCAGTATGT	ref_5741_new	29	41	25	15	30	22	38	22	40	24
CATGGTGCCGAATGTC	ref_5741_new	17	56	17	12	46	13	40	13	40	8
GCCCCTTTTCAGTCGG	ref_5741_new	10	16	13	22	27	11	18	14	24	11
AATTATTTGAGACGAG	ref_5741_new	98	133	116	109	132	98	152	87	135	63
GTTAATTTCTAGGGGA	ref_5741_new	14	35	24	13	28	29	30	14	30	29
TTTAAAGTCCATATAT	ref_5741_new	19	21	19	12	26	18	27	16	27	7
CTGGGGCTAGACGTTA	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GCGCCCGCGTTAGGTG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GGCACATCGGGTACTC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CTAGCTCCTGCCGACT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CCTGTATCGTGGGAGA	ref_5741_new	4	4	4	2	9	6	5	3	13	3
CAACCGGAACACATGT	ref_5741_new	30	41	39	26	27	17	46	18	19	21
TTTATCATAAAATCTC	ref_5741_new	36	72	57	53	71	48	95	37	63	55
TGAAGTTTCAGCAATT	ref_5741_new	20	22	23	10	20	8	15	9	21	9
AGTGCCTGTTTTTCGC	ref_5741_new	5	2	6	7	8	4	5	1	5	1
TGTGTTGATAGGGCTT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
AACTTCCTTGGCACTC	ref_5741_new	26	28	29	15	29	15	30	19	38	14
TTCATGCCATATGCCG	ref_5741_new	2	8	8	11	6	9	17	9	16	9
GTCGTGTAGCGTTACC	ref_5741_new	23	27	38	30	34	23	41	19	53	29
CGACCCTGAAGGCGAT	ref_5741_new	58	72	62	54	81	58	70	46	64	49
CCTCAAGCATGAGCTT	ref_5741_new	5	11	6	1	4	3	5	5	2	4
ACGATAGCATCTCAGC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GGTTGGGACCAATTCT	ref_5741_new	18	22	15	20	29	16	28	16	29	15
GGGATTTTTGGACTGT	ref_5741_new	6	4	6	3	7	3	7	7	3	2
TTCGATCGCATTATGC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GTCTAGCGCCATCTTT	ref_5741_new	9	8	8	8	11	8	14	8	5	11
GTGGGTCCGTCAGCCT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TGTCGGTCGTACGTCC	ref_5741_new	30	64	24	26	79	18	81	23	82	28
CCGACCTGATCGCGCC	ref_5741_new	31	45	46	41	44	34	46	38	33	35
CCCCGAAAACCCTTCG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
ACCCTAGATATCCGTC	ref_5741_new	3	6	2	1	7	6	13	6	6	3
GCATATCTACACGTTT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CTATTGCGGCTACAGT	ref_5741_new	37	70	45	51	55	30	75	37	60	39
GTCCACATGTCCAGGA	ref_5741_new	10	12	13	5	9	8	10	12	22	14
TTCTATCATTCATGAG	ref_5741_new	10	18	6	7	10	12	7	11	8	10
CCGTGTTTGAGGCAAA	ref_5741_new	31	66	60	53	66	36	67	35	55	35
CTAATCTCGAGTCATG	ref_5741_new	8	13	7	13	13	7	22	9	21	7
GTTTATATGCAAATTC	ref_5741_new	43	91	75	66	83	50	103	46	100	60
CTTCCTAACCCGTTCC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TTAAAGTTATTAAGCA	ref_5741_new	24	37	36	38	39	37	44	17	65	24
TTGCGCGCAGGCTGCT	ref_5741_new	18	40	19	20	38	17	30	34	40	18
CTGTGCGGGCTGGGTG	ref_5741_new	17	46	33	20	38	19	47	10	39	34
AAGAGCGCTATCGCCC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GGCCGCTTTTAACACC	ref_5741_new	32	65	42	34	57	41	57	43	60	29
GAGGCCGTCAGAAATT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TCATTATAATCTTCCG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CGGCAAGATTGACCCT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GGTTCATGTTTACAAC	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TTCAAGTTATGGATTT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TTTACGTCTGTTTCAA	ref_5741_new	0	0	0	0	0	0	0	0	0	0
CCACCGGGTAATCATC	ref_5741_new	53	82	71	42	91	56	77	65	95	67
TGCCCGCCATGTGCCG	ref_5741_new	15	24	26	17	24	23	24	13	16	24
TCGTTCCCCTGATTTA	ref_5741_new	3	8	5	3	5	3	14	4	7	3
ATCTCCCGTGTCCTAG	ref_5741_new	14	114	17	10	108	10	93	9	90	10
GGTAGTGTGGCTTTAG	ref_5741_new	43	66	68	45	85	39	77	52	66	39
TTCTTAACTCCCCTTG	ref_5741_new	13	92	27	18	110	19	98	20	101	18
AGTGCAGCTATGGAGT	ref_5741_new	0	0	0	0	0	0	0	0	0	0
AGTCTCCTACTGTGAG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
GTTAACCTTGTGTTCC	ref_5741_new	47	55	44	35	54	30	61	43	57	42
GTTATAGTGTTCCTCC	ref_5741_new	26	74	43	32	72	37	61	30	55	33
TGTGGTCGTACTTCGG	ref_5741_new	3	3	4	1	4	1	5	1	6	1
GACGTCCCTTCCTACA	ref_5741_new	16	29	13	18	40	12	36	9	29	15
TTGCTTGGACCCAGGT	ref_5741_new	38	63	33	52	34	27	70	21	70	27
TAAGTTCGATGCTCGG	ref_5741_new	0	0	0	0	0	0	0	0	0	0
TCACTAAGCTATGCTC	alt_5643_new	0	0	0	0	0	0	0	0	0	0
GCCAGAGCGCTTTTGG	alt_5643_new	7	13	14	5	23	6	9	7	15	5
CGGCACCGATGATTCC	alt_5643_new	0	0	0	0	0	0	0	0	0	0
TACTCTTGTAGCGGTT	alt_5643_new	8	12	5	7	12	5	9	2	7	8
GTTGGCTTCCGGGTAA	alt_5643_new	1	4	3	2	5	2	4	3	3	2
TGAAGAGGGAACATTT	alt_5643_new	23	16	24	24	31	28	22	22	34	27
CTCTGCGACTCAGATT	alt_5643_new	24	27	33	19	40	25	48	21	37	22
GTTCCTTTCCGTTAGG	alt_5643_new	17	21	34	19	34	19	36	26	28	36
CCCGAGTCCGGATGTC	alt_5643_new	0	0	0	0	0	0	0	0	0	0
AACCTAGGTTTATCTC	alt_5643_new	0	0	0	0	0	0	0	0	0	0
CCCGGTTACTATCCAT	alt_5643_new	8	25	15	10	18	10	11	11	13	19
TTGGGAACACCTCAGC	alt_5643_new	19	40	31	24	42	18	42	23	43	15
TCGGATTCGTTTGCGA	alt_5643_new	32	27	34	24	35	29	37	13	38	23
TTCGGAGTTCACACCT	alt_5643_new	11	12	16	18	27	10	22	19	18	13
TTGGTTGGGGACTCTG	alt_5643_new	117	220	130	117	266	102	257	97	272	88
CTCGCTGCCGAATTAT	alt_5643_new	13	21	21	14	19	15	31	19	21	20
GGACATCTACCTCATG	alt_5643_new	54	45	54	41	41	42	62	49	61	43
AATTGGAATTATCTCC	alt_5643_new	6	11	8	10	8	14	8	18	8	4
CCTCAACGTAACCTTA	alt_5643_new	8	14	17	14	19	15	11	14	19	11
CTTGGTGGTTTTCCCT	alt_5643_new	0	0	0	0	0	0	0	0	0	0
AGACAGTTGACGTGAC	alt_5643_new	0	0	0	0	0	0	0	0	0	0
AGCATTTGACCACGCC	alt_5643_new	22	30	23	22	32	20	33	28	41	12
ACAACACCACTCCCGG	alt_5643_new	0	0	0	0	0	0	0	0	0	0
TAGTAAATACGGTTTC	alt_5643_new	57	55	85	60	71	75	84	47	84	52
ATGGTCTACGTGATCG	alt_5643_new	0	0	0	0	0	0	0	0	0	0
CTTTTGGTTCACTACT	alt_5643_new	16	10	30	18	16	8	16	13	20	18
TGCTTAGCGTCGCTAA	alt_5643_new	7	18	8	6	11	5	18	7	17	6
CCCCCCTCTTATCTGT	alt_5643_new	0	0	0	0	0	0	0	0	0	0
CTTCGCGGAGGTGCGG	alt_5643_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTTTCTTTTGG	alt_5643_new	78	55	95	83	55	69	68	76	53	84
GAATCTAATCGATGTG	alt_5643_new	43	54	54	50	51	44	39	43	60	34
ATGGTCTGCGTGAGTC	alt_5643_new	0	0	0	0	0	0	0	0	0	0
GTCCGTTGTATCCTCG	alt_5643_new	45	46	51	39	42	42	29	32	38	34
CGTGGTGTTAGGGCCT	alt_5643_new	0	0	0	0	0	0	0	0	0	0
TCTCTGCTAGTTCCCC	alt_5643_new	0	0	0	0	0	0	0	0	0	0
AGCATCTCAAATAAAG	alt_5643_new	19	20	11	9	25	14	30	14	14	11
TTCCGCGTTCTCCACT	alt_5643_new	0	0	0	0	0	0	0	0	0	0
AACCATTGGTATAACA	alt_5643_new	0	0	0	0	0	0	0	0	0	0
TAGCTACATCTTTCTC	alt_5643_new	39	40	40	42	65	27	40	38	54	26
TCCGCACGCTTTGGTA	alt_5643_new	0	0	0	0	0	0	0	0	0	0
TCATTTCCGATGACAA	ref_5723_new	79	107	105	84	101	81	116	66	96	75
GGTAGTATAAGTCTCC	ref_5723_new	14	41	24	12	30	16	26	17	23	13
ACTCTTGTAAAGGGAG	ref_5723_new	50	59	48	33	61	29	67	31	56	22
ATCGTTCGTTTCCCTA	ref_5723_new	12	30	16	10	32	27	31	18	30	16
GCTTCTTTTCCGCGGG	ref_5723_new	29	96	51	44	108	45	110	49	97	40
CGATAACTTGGGTTCT	ref_5723_new	0	7	3	1	4	6	4	4	5	1
GGCATCTGTCTTTTAC	ref_5723_new	15	13	5	10	16	7	17	5	21	9
TTCCTTATCAAAGCCT	ref_5723_new	18	19	21	20	27	10	25	12	21	14
TAGGGAGCAGGATATA	ref_5723_new	78	129	98	96	140	88	148	78	149	76
TTTTTTAAACGTACTT	ref_5723_new	1	4	12	4	7	4	8	4	9	7
TCCCAGGCTAGCAGCT	ref_5723_new	13	23	7	15	16	13	27	17	22	15
AGAGGCTCCTATTCCT	ref_5723_new	64	87	74	61	108	60	100	53	105	57
GTATCAATAAGCTGCC	ref_5723_new	65	111	97	80	117	62	116	77	144	61
CGGGCCTATCCCTTAG	ref_5723_new	0	0	0	0	0	0	0	0	0	0
ATCAACGATTACTTGA	ref_5723_new	101	138	101	105	157	86	147	76	150	61
TAATCACTGTTATATT	ref_5723_new	18	27	14	19	19	13	38	11	34	4
ATGTTTCTTCAGGCGC	ref_5723_new	13	32	21	15	23	14	31	14	33	14
ATGCAGGTTAATGCGA	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GCCAGGGTTTCAGGTG	ref_5723_new	8	23	13	10	24	9	27	12	31	11
CTTCTGGTCAACTTCG	ref_5723_new	47	87	53	71	93	50	99	55	91	43
AATTCCCATTCCGTGC	ref_5723_new	2	1	2	0	3	2	2	0	0	1
ACTGATGAGAATGACC	ref_5723_new	28	40	28	27	35	16	49	16	28	15
GATATTCCTCCCACAT	ref_5723_new	8	28	10	11	15	12	34	13	31	12
CGCCGGGTCGTATACT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TGATAACTGGAGCGTT	ref_5723_new	5	30	16	7	19	5	25	7	25	7
AGACTATCATCGTCAC	ref_5723_new	4	11	10	2	11	7	10	5	13	5
GTCGTGGGGCGTGTAT	ref_5723_new	28	40	39	19	51	31	58	26	63	25
CCTCGCTGACTTTTAC	ref_5723_new	0	0	0	0	0	0	0	0	0	0
AGTTTAGGTCTCCATG	ref_5723_new	0	0	0	0	0	0	0	0	0	0
AGATTTAGTCCAGTTC	ref_5723_new	11	14	11	4	9	8	13	9	15	4
CTCGCCACTTCTTTGC	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TGCATTGGACATAATC	ref_5723_new	0	0	0	0	0	0	0	0	0	0
CAAGTCCGGTTTTTTG	ref_5723_new	16	30	23	12	14	17	28	21	29	14
GCCTAGAGAGCAAGTT	ref_5723_new	27	50	46	33	46	36	72	28	50	33
TTTTGGAAGGTTAAGG	ref_5723_new	0	0	0	0	0	0	0	0	0	0
CCCACCGCAATGTTAG	ref_5723_new	17	26	18	17	29	11	35	16	30	14
ATTGGTTGCACTACAC	ref_5723_new	30	53	28	16	42	18	67	17	57	18
AGGTTATGGTCGGTTT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GACGGACCTATCTAGT	ref_5723_new	15	35	22	22	45	11	35	12	40	16
CTTGTTGGAGTATGCA	ref_5723_new	0	0	0	0	0	0	0	0	0	0
ACCCCCATCTATGAGC	ref_5723_new	8	15	10	12	23	11	17	8	18	13
TCTGAGACCATTAGGC	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TATCAGGTCCGATATC	ref_5723_new	0	8	3	3	4	1	5	1	2	1
TGAGGTGTGATCGGGG	ref_5723_new	30	52	29	33	52	23	50	28	56	24
GCTTCTAACAGAAGTT	ref_5723_new	4	9	8	7	11	6	8	8	11	4
GTAAGATGTCTCACTG	ref_5723_new	9	7	14	3	13	7	8	10	4	7
AGGACTCTGGATTTAG	ref_5723_new	30	27	28	17	29	23	46	26	42	20
AACGCCCTACCATGGA	ref_5723_new	68	107	72	63	103	48	114	54	134	58
TTCAATTGGCTTTGAT	ref_5723_new	6	6	12	7	18	6	13	4	11	8
TGAGCAGGTAGCCACC	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GGTCAAGGTTCGTGTT	ref_5723_new	4	7	4	7	8	2	15	4	14	10
GAAGGCTTAAGTAGCG	ref_5723_new	11	14	22	10	13	13	21	7	22	9
GTGTTACTGTCCAGGA	ref_5723_new	110	171	130	136	190	85	192	94	182	87
CGTGCTGCAGATTTCC	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GTAAGAGATGTGGCCC	ref_5723_new	9	8	9	2	9	1	7	0	12	3
CCTTAAGTTGTATTTA	ref_5723_new	73	141	83	78	154	64	166	50	136	55
GTTCCTTGTTGGCCTG	ref_5723_new	2	24	7	9	21	6	10	10	15	8
CCCTGAGTTGTATACG	ref_5723_new	12	27	17	16	15	14	35	15	30	19
TTGGCCCTCATCGTAT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TTGTCTACGTTCGTTT	ref_5723_new	9	13	11	11	2	6	8	7	10	4
TTTGCCAACCTAGTAT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TAAAGTCATTCACGTA	ref_5723_new	0	0	0	0	0	0	0	0	0	0
AATCTTCGGCGAATGG	ref_5723_new	45	53	47	32	60	47	52	42	49	32
AACTTTCGAGGATGGT	ref_5723_new	48	78	39	62	72	39	86	47	84	28
AAGGGCCAGGGAATCA	ref_5723_new	33	43	30	27	31	32	55	25	41	26
ACCTGTTCACGGTAAA	ref_5723_new	0	0	0	0	0	0	0	0	0	0
ATTGCGTGGTACAAGG	ref_5723_new	7	8	4	1	9	5	8	3	3	4
CTGTACTATACTTTGC	ref_5723_new	3	14	4	8	11	11	10	3	15	5
CCCGGTCGTATTTGGC	ref_5723_new	1	14	3	0	12	6	10	5	9	4
GGATCTTATGCCTGCC	ref_5723_new	13	31	33	18	40	14	34	19	29	24
CTATGAGTGCTTAGGG	ref_5723_new	5	5	1	1	6	7	5	1	4	4
GTTTCTATTATTTCTG	ref_5723_new	210	363	244	246	380	238	399	202	424	200
TTAATGTTGACTCACC	ref_5723_new	70	181	72	76	178	62	167	52	175	46
AGCCTTCGGCGCTATT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GCTTCACCGGTCCCCT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
AAGACATAGGGTCCTC	ref_5723_new	22	29	51	36	49	29	40	19	58	22
TTGTCGAGTGATTTTC	ref_5723_new	11	15	9	9	19	13	25	14	24	11
AATTTGGTCTTCAGTA	ref_5723_new	19	35	29	15	32	30	61	23	60	23
CTATCTACTGGTGAAG	ref_5723_new	26	56	32	26	65	25	45	27	40	22
CGGCTAGAATTTAGTA	ref_5723_new	21	63	55	38	43	22	53	24	61	41
GGTGCTGGATCGTGAG	ref_5723_new	112	178	161	140	168	112	170	93	214	87
GGTATTACTGTAACTA	ref_5723_new	94	155	109	92	158	96	150	79	136	80
CTGTTATTTTTGGCGC	ref_5723_new	22	53	47	55	76	31	69	49	65	48
GAACATACTGGTTGCA	ref_5723_new	24	40	34	28	36	17	40	31	55	24
TTACTCGTATGGCTTT	ref_5723_new	15	40	22	14	46	26	52	14	43	14
TAAAGGCTCCTATAGT	ref_5723_new	1	21	12	11	19	4	17	7	14	9
TACATCCAGCGCGATT	ref_5723_new	2	5	5	4	2	8	8	4	10	3
ACCTAACCTATCCCGG	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GCCGCCTACCCTACGT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TTGAGCTGTTGCTTCC	ref_5723_new	61	94	65	38	91	33	103	36	116	56
CTCTCATCGTAAACAG	ref_5723_new	31	51	36	36	67	37	55	37	57	31
TGATTTTCTTCTAGAT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TCCGTTTTTTTAAACG	ref_5723_new	37	41	37	25	47	25	41	33	40	27
GAAATCTTTCCGGCAG	ref_5723_new	24	37	19	33	47	21	38	24	38	20
TGACGGTAGCACGAAC	ref_5723_new	14	13	12	10	12	15	6	8	27	13
ATTAAGTACGAAGCTT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GCCGACCAGGCTTTTT	ref_5723_new	17	31	14	7	33	10	22	17	17	13
GCCGAATAACGTTTGC	ref_5723_new	0	0	0	0	0	0	0	0	0	0
CTATGCCATATAACTG	ref_5723_new	5	14	9	5	15	5	22	4	9	9
TGTCGTTAAGCTTGCT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
TCAAGAGAATATGTTT	ref_5723_new	1	0	2	2	4	0	5	0	0	0
GCATTCGGCTACCATA	ref_5723_new	0	0	0	0	0	0	0	0	0	0
GTTGCCCCTAAACAAA	ref_5723_new	135	157	143	132	160	115	174	88	180	80
CTTACTTCGGTAAATT	ref_5723_new	0	0	0	0	0	0	0	0	0	0
CTCCTTCATATGGAAT	alt_176_missing	7	6	12	7	20	7	14	9	10	6
AGGGCAATGTACTGTA	alt_176_missing	13	15	25	13	33	17	26	25	36	17
TTGTGCCTATGCCCAA	alt_176_missing	8	14	16	11	12	15	16	14	25	15
ATGCCCCTTTTGTTGC	alt_176_missing	12	13	16	14	16	16	12	20	31	10
CCGCCACCGCTCATCT	alt_176_missing	19	33	25	22	49	31	49	27	38	24
AGTTACAGTCCTCGTT	alt_176_missing	8	7	8	10	6	14	13	6	8	5
TCGAGTAGCTTTTCCG	alt_176_missing	34	41	40	32	42	24	33	21	37	43
GGCTCGTTCGTTGAAC	alt_176_missing	38	64	51	44	50	34	44	32	56	29
CATCATAAGTCCAAGC	alt_176_missing	7	1	10	7	5	11	6	9	13	5
CCTTCTCCTCCATTCA	alt_176_missing	3	5	14	6	11	7	12	6	11	9
GCTTTTATTGTGGCTT	alt_176_missing	0	0	0	0	0	0	0	0	0	0
GCCTCTGTTCGTCTGG	alt_176_missing	0	0	0	0	0	0	0	0	0	0
TGAGGGGTAACAGAAC	alt_176_missing	129	172	165	127	166	138	164	113	195	106
TTACGTAATCTTCACT	alt_176_missing	58	33	49	30	54	44	47	42	60	44
TCCCTAGATCCTTGGG	alt_176_missing	47	91	66	71	93	71	83	49	82	48
CAAAAGCCCTTCTACT	alt_176_missing	118	185	151	147	179	159	171	144	174	155
TAGCGCTTCTGTCACG	alt_176_missing	23	26	19	19	25	24	26	18	40	20
CAATACAGATGACCGT	alt_176_missing	31	46	46	31	36	32	47	21	36	28
CAATCCGGGTTGGTTC	alt_176_missing	84	111	114	68	99	63	112	93	118	62
ACAAGTGCGGCATCGA	alt_176_missing	0	0	0	0	0	0	0	0	0	0
CGCTGTTCCTTGTATA	alt_176_missing	61	71	63	56	55	62	84	59	72	49
TGCACTCCTATGGCCG	alt_176_missing	0	0	0	0	0	0	0	0	0	0
CCGGGTGGAATTCAGT	alt_176_missing	0	0	0	0	0	0	0	0	0	0
TCAACAGTCCTCTAGA	alt_176_missing	0	0	0	0	0	0	0	0	0	0
GTATCGTTGGTTTTTT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAGAACCCGTATT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGGGCTGGAAACT	alt_2027_reverse	20	27	14	16	31	19	15	12	28	14
GTAGTGCACCACCGCG	alt_2027_reverse	40	47	48	40	49	35	53	22	41	22
TCGTGCGACCTCGGGT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGAACTATCATCT	alt_2027_reverse	17	19	8	21	18	13	11	13	21	22
GCGTTGCGGTTACGGT	alt_2027_reverse	241	319	248	193	346	219	335	190	369	196
CATGCCTCGCTTCAGC	alt_2027_reverse	126	166	155	121	165	118	165	129	191	113
GTTGCGATTTTTGTTC	alt_2027_reverse	2	13	12	12	8	12	5	9	9	3
GCGGACTAAGCCCTTG	alt_2027_reverse	17	14	8	13	19	10	21	11	14	8
TGCAGGTCTGACTCCA	alt_2027_reverse	16	24	14	22	38	17	32	12	46	12
TTCGGGGACGCTCTGT	alt_2027_reverse	107	153	134	102	131	136	128	93	166	116
CCTTTCTACGAGTTTA	alt_2027_reverse	5	5	6	7	6	3	3	3	10	5
TGCGTAGCTGTTTAAT	alt_2027_reverse	44	47	52	40	68	47	57	43	65	47
TATTGCGTGATATTTG	alt_2027_reverse	8	9	19	9	13	8	10	4	4	8
ATCTCGAAATACGATA	alt_2027_reverse	47	124	71	46	115	60	154	51	120	57
TCGGATGGCTTCAAGC	alt_2027_reverse	56	60	43	48	56	43	55	62	61	59
TAGTCGTACTTCCGCG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TTGGCAGTAATAGTTG	alt_2027_reverse	37	67	57	50	66	37	75	45	73	46
GTCGAGCGTCCCTCGC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTCAGCTTTGCAC	alt_2027_reverse	12	28	9	16	14	13	27	11	26	6
CAGCGCCGTATTGACC	alt_2027_reverse	63	175	69	69	149	58	195	58	213	51
CATTTCTGTTATACGC	alt_2027_reverse	25	37	27	34	48	27	55	29	48	19
CACCGCAGCTGCCAGA	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCGTTCCGCTCTG	alt_2027_reverse	33	53	39	41	61	34	47	32	58	49
CGAGTTGCTCTCTACA	alt_2027_reverse	57	49	39	53	74	35	58	42	53	34
GAGTTGGTGCGTTGGA	alt_2027_reverse	93	125	94	92	127	95	140	82	169	93
TAGATAAAGATTACTT	alt_2027_reverse	2	0	2	4	0	3	1	1	1	0
CGCTGATGCGATCCTT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCTATTCATGCAG	alt_2027_reverse	3	5	3	5	6	3	6	3	1	1
TCCTACTGTTAACCAG	alt_2027_reverse	50	79	43	37	61	36	50	43	57	45
AAGTTACTTCTTGTAT	alt_2027_reverse	16	21	18	21	22	14	25	26	43	34
CGCGCGCTCTTTCCTC	alt_2027_reverse	25	34	40	37	47	20	57	28	50	18
CACGGACATTGTGGTA	alt_2027_reverse	14	17	17	17	42	13	22	19	22	12
ACCGGTTTTCTTGCCT	alt_2027_reverse	17	37	22	10	47	9	37	24	38	15
AAAGTCGGGCTTTTCT	alt_2027_reverse	46	59	50	43	69	47	46	40	37	20
GTACTACGTCTTAAGT	alt_2027_reverse	8	22	11	9	22	3	14	9	9	6
CATTTTAACGGATCTA	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TGGATTATCACGCTCA	alt_2027_reverse	32	48	53	34	33	23	29	18	28	26
AATTTTACCACCTGTT	alt_2027_reverse	37	68	47	59	75	34	64	42	66	36
CAATGATGGACTTGCC	alt_2027_reverse	7	7	9	5	18	3	12	0	19	0
CAGTCATATTGTATGG	alt_2027_reverse	14	27	19	13	14	18	26	15	33	15
CATTTGGCAGCCATTC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TATTTCACCTCTTGCC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CATGGTCTCTTCATTC	alt_2027_reverse	41	36	39	22	37	30	58	21	41	24
CTTCTTCTTGAGCGTT	alt_2027_reverse	21	22	23	16	11	23	18	17	32	21
ACTGACTTACAAGGTA	alt_2027_reverse	62	76	91	64	110	64	108	73	93	54
TTGTCACCACTCCTGC	alt_2027_reverse	17	65	21	22	52	10	74	11	74	12
TTAAAATTCCAGGTCT	alt_2027_reverse	25	44	31	27	40	18	52	25	55	30
GGTGTATCGACTCCTG	alt_2027_reverse	90	82	76	68	107	79	140	65	133	68
CCCTGATGGTGTGACA	alt_2027_reverse	20	50	29	23	54	15	40	20	49	17
GTTATGTATGAGCAGC	alt_2027_reverse	3	3	4	3	1	2	1	2	2	2
GCTATGAATTCACAGT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CACTCTTACTCACCTG	alt_2027_reverse	2	21	3	1	20	1	24	0	19	4
TTCTGCTTCTTCAGAA	alt_2027_reverse	5	10	18	9	14	10	11	4	12	4
TGGGGTGACGCCACGC	alt_2027_reverse	8	12	18	17	15	16	19	10	20	8
GTTTAGGTCACGAGGC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TACGACACCTGAGGTG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CAATTTATTCGGTTTG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTACAGGCCTATT	alt_2027_reverse	21	18	11	14	14	10	25	17	25	10
ACACTTCTTTATGGGG	alt_2027_reverse	6	7	8	8	8	9	12	5	10	8
GAGCCATCCGGCCGCC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GGCAGTTGTCAGAGCA	alt_2027_reverse	24	31	28	27	28	25	28	25	33	24
TGGTTCCCATAAGGTG	alt_2027_reverse	15	24	26	23	38	21	30	27	26	6
TTAGCGCTGTTCAAAG	alt_2027_reverse	21	35	24	20	40	19	45	21	43	19
ATTATAGTTCCTACGA	alt_2027_reverse	13	18	10	10	18	10	18	8	22	8
CTGCCTCGTGGATCGG	alt_2027_reverse	2	0	2	0	4	1	5	2	2	0
TTATGAGTGAGAAGGT	alt_2027_reverse	47	73	74	50	80	63	94	43	92	62
TTGAGATATCCTAGCT	alt_2027_reverse	26	40	29	28	36	39	35	33	47	37
TGAGGGTTGTTAACTA	alt_2027_reverse	8	9	10	4	13	9	12	9	10	8
TATAGCTTTTGGAGTT	alt_2027_reverse	21	27	13	16	21	17	14	13	24	17
TGTATGTATCTATCGC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CAATCCTTCACGATCC	alt_2027_reverse	36	14	47	33	24	31	21	46	18	31
ACGTGGTACACCCCTA	alt_2027_reverse	6	29	5	9	16	10	21	13	22	7
CTTGTCAATGCTTCTA	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGTTAAGTGTTT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGGAATGCTAGAT	alt_2027_reverse	7	13	11	11	27	13	22	9	24	10
GACAGCATACATGCAT	alt_2027_reverse	6	7	8	10	5	3	7	8	15	6
CGGGTGCAGGAGGTTG	alt_2027_reverse	20	29	27	24	31	11	39	17	30	16
CCTAGCGAGCGTTCCT	alt_2027_reverse	38	53	24	31	51	23	64	35	70	32
AGTGCGACTTCAGGCG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CCATTTGCCAACGGCG	alt_2027_reverse	38	75	55	42	81	43	89	48	100	50
TTACCGTGAGGTTAGG	alt_2027_reverse	22	18	12	14	12	12	22	13	14	12
CCTTGTCTGTCCGGTT	alt_2027_reverse	10	10	9	4	14	7	17	9	12	5
ATCCATGCAAATACCA	alt_2027_reverse	28	24	21	16	30	15	25	16	29	17
TGCCCTTTGTCCTTTC	alt_2027_reverse	22	13	29	17	30	20	31	18	30	13
CCGTGTCTTGGCGCAT	alt_2027_reverse	3	9	6	2	14	1	8	6	10	4
CGGTATTTCTCTTCTG	alt_2027_reverse	19	19	13	21	20	10	22	18	30	9
CGCAATCTAGAAGTCA	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTTGCTTTTTGGT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CGTGCATATTGACTTG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCTGGGGTAAGGT	alt_2027_reverse	6	2	3	4	0	2	3	2	5	2
GGCGACTAGGAATTTT	alt_2027_reverse	5	5	11	2	6	9	12	3	12	7
TAGTTTATGTTAGGTG	alt_2027_reverse	28	48	31	34	43	29	42	18	41	26
CCTTGACGGCCGCTTA	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGCTAGGTACGTT	alt_2027_reverse	15	39	4	9	47	9	36	10	52	10
CCCGGGTCTGACCACA	alt_2027_reverse	15	27	21	18	35	17	44	16	31	23
GTTGATGCGTTGGCCT	alt_2027_reverse	7	8	7	12	13	15	15	8	7	8
GTACGCCATACGTCCG	alt_2027_reverse	37	51	42	33	85	40	67	39	64	29
GATCTACTGTTACTGG	alt_2027_reverse	54	33	36	40	36	24	46	28	43	25
AAAACTTCTTCGCTGG	alt_2027_reverse	5	3	2	0	3	1	4	0	6	1
AAACTCTATCTCGCTC	alt_2027_reverse	121	166	196	185	211	135	217	147	216	157
CCACAGATGGTAATAG	alt_2027_reverse	44	74	60	36	78	45	69	34	68	36
AAGTATCGGTTATGTG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
ACATACCTGTACAAAC	alt_2027_reverse	2	4	9	6	14	4	9	4	3	3
ATAAAACCATCCGGAG	alt_2027_reverse	37	47	50	43	57	45	35	34	53	29
CTTGCCCAAGGTAAAC	alt_2027_reverse	40	42	56	40	52	26	42	27	56	36
TGGGATGCGCCAGGGG	alt_2027_reverse	33	36	43	33	46	37	56	20	46	21
ATAGTATGCTGCTACG	alt_2027_reverse	23	25	24	20	27	16	35	16	28	11
CCCCAGTCTCGGTTTT	alt_2027_reverse	86	122	109	106	129	101	148	103	140	84
TATCTGTTGTCATTAA	alt_2027_reverse	66	93	67	70	95	65	86	63	115	40
GGGCTGGCCTAATGTC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGACGTTGGCATC	alt_2027_reverse	9	17	22	16	17	4	24	10	23	9
GAATTGTCTTCTACTA	alt_2027_reverse	30	65	43	39	52	28	41	30	56	36
ATCCCGGGGAAACACC	alt_2027_reverse	44	65	42	53	89	46	85	47	77	50
ATAGTAAGGCGCAGCG	alt_2027_reverse	3	1	4	0	5	7	6	3	2	2
ATGGAATGAAGTATCG	alt_2027_reverse	20	36	18	25	25	22	30	12	31	20
TCCGACTCGCCTATGC	alt_2027_reverse	11	60	20	12	62	9	87	7	89	18
CCTGTCCACATAAAAC	alt_2027_reverse	13	23	19	15	23	15	23	11	29	10
TTGTTTACGAGTAGAC	alt_2027_reverse	14	12	10	7	13	12	11	5	12	3
ACCCCACACTGGTATC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTCTGCTCGTCCG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
AATTGCCCAACCACAC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGACGCCCGCCT	alt_2027_reverse	7	6	3	2	13	7	2	2	2	1
TCATCGTGTTGGCTAC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TGATGCATCGTCTGGG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TAATCAACTGGCTGGG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
GGTGTAACTGTCCGAG	alt_2027_reverse	2	5	2	1	3	1	6	2	4	1
CTATTTTTCCTCGTAG	alt_2027_reverse	27	34	28	31	45	37	52	30	34	21
TATACTCTTGATATGC	alt_2027_reverse	44	68	56	42	92	47	83	42	89	37
CTATACGGAATGTTTC	alt_2027_reverse	33	58	56	27	37	36	47	26	56	22
TTCGTAGTTGGGGACA	alt_2027_reverse	33	43	54	33	39	20	52	28	65	38
CGTTTATTAGATCTAT	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
AGTCATGCAAACGGCC	alt_2027_reverse	48	48	55	43	46	37	44	27	61	29
GTTGTACTTTAGTTTC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTTTATACAGTCT	alt_2027_reverse	103	157	122	79	152	96	152	79	173	71
ATAACTTATTATGGGC	alt_2027_reverse	25	34	21	19	37	23	36	28	31	23
AACATTCCATGCTCCA	alt_2027_reverse	15	17	21	17	22	24	28	15	24	19
GAGCCTTGATGGCTTA	alt_2027_reverse	17	12	18	15	16	7	19	12	19	8
CTCTATCTTTTACACC	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
AGACTGCCTTTTCTAG	alt_2027_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTTACCTCACCCG	alt_515_negative	0	0	0	0	0	0	0	0	0	0
GTACCTGATTGTTCGG	ref_515_negative	41	50	57	67	51	34	58	43	48	34
CTCAAGGACTATCGGC	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TCTGTCTATTGGTCCT	ref_515_negative	83	92	103	85	97	85	99	79	110	76
TTTTTTTACAACGGTG	ref_515_negative	0	0	0	0	0	0	0	0	0	0
GAAAATTTCCATTTCG	ref_515_negative	71	43	68	76	47	62	54	43	53	55
ATTTCCTCTCATGTAG	ref_515_negative	20	13	22	14	20	25	17	17	22	32
TCTGCCCACCCGGCAG	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TACCTTTTCGCATTCT	ref_515_negative	49	54	61	56	52	47	49	42	43	42
GCCAACTAATGGCATA	ref_515_negative	82	57	88	72	73	57	70	55	50	61
TTTACTTGTGCGTACG	ref_515_negative	0	0	0	0	0	0	0	0	0	0
GTTGCGGCTCCCTGTA	ref_515_negative	31	35	44	27	33	38	34	29	35	28
TGTCTCCCAAATGATT	ref_515_negative	20	19	24	13	20	18	17	23	9	18
AGGTTGCACTAACACT	ref_515_negative	12	11	21	21	15	13	14	18	12	17
TACATCTCTCTCGTTC	ref_515_negative	0	0	0	0	0	0	0	0	0	0
AATGCCTTTTTGGGGA	ref_515_negative	3	6	5	0	7	6	1	2	9	6
GGACACAGCTTTTTCA	ref_515_negative	56	64	68	64	42	47	74	67	73	67
TAATTGTACAGTTAAC	ref_515_negative	16	16	17	18	7	13	12	13	11	13
CATCGCTGACCGGCAC	ref_515_negative	17	21	18	23	22	20	16	15	24	14
TGTGACCTGTGACCGT	ref_515_negative	0	0	0	0	0	0	0	0	0	0
GCCCTAAGTCAAGACA	ref_515_negative	66	56	70	55	46	41	53	64	61	50
CCGTCGAGTTTCAGCC	ref_515_negative	15	25	16	14	23	9	17	12	21	13
CCCCGACAATGATCTG	ref_515_negative	15	28	14	13	27	11	17	16	30	15
GCGGCGCCCGATAGTC	ref_515_negative	98	102	135	116	116	107	109	94	121	104
AGAAATATGCCTCAAA	ref_515_negative	46	46	59	55	49	35	35	42	46	31
GACCGCACAATCGCGT	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TCCATGCTCATTTAAG	ref_515_negative	0	0	0	0	0	0	0	0	0	0
CTCTACGTGGGTTGGC	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TGTTAGTCGAGGATTT	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TAATGTAATCGCGACG	ref_515_negative	15	22	16	7	16	10	5	11	19	13
TTTTACATAGCGCGCT	ref_515_negative	19	26	37	21	29	18	29	13	34	20
GGATGCCATAACGAGA	ref_515_negative	24	25	53	27	28	28	21	24	29	17
TCAGTCTACCTTTTTG	ref_515_negative	21	44	31	31	36	16	26	16	27	21
TAAAGGATACAAACAC	ref_515_negative	0	0	0	0	0	0	0	0	0	0
ACGCACGTTCAGTTAT	ref_515_negative	202	221	275	259	222	211	205	189	227	199
CAAGTCGTAAACAGCC	ref_515_negative	44	33	45	36	30	42	23	41	32	30
CATCTTGCGCCTCCCT	ref_515_negative	8	10	6	18	13	16	10	9	9	8
GTTGTAATACCCTGCT	ref_515_negative	9	11	9	10	11	9	10	6	11	10
TACTCCAAGTAGTCAA	ref_515_negative	0	0	0	0	0	0	0	0	0	0
CATGCAAGTCAGATAC	ref_515_negative	31	41	62	34	42	34	49	29	60	29
TCCAGTATACCCTAAA	ref_515_negative	5	6	8	3	3	6	11	4	7	7
CGTTCGAGAGGTGATG	ref_515_negative	41	55	48	33	44	37	31	33	46	43
GCACAGGTTGTTTCCT	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TCTTTATGCGATATTA	ref_515_negative	54	59	79	79	54	67	60	46	58	62
CATAAGTCCAAATGCA	ref_515_negative	0	0	0	0	0	0	0	0	0	0
CCTAGCCGTTGAAAGG	ref_515_negative	79	88	93	77	90	73	94	62	88	47
CATTAGTTCTCGGCAT	ref_515_negative	38	11	24	21	27	31	29	27	22	37
CAAAGTTTTGGGCACT	ref_515_negative	253	276	286	254	252	225	248	219	271	219
ACACACTAGCCTCAGG	ref_515_negative	57	84	83	59	96	63	68	68	109	52
TCAACATTTACGCGGA	ref_515_negative	7	6	17	12	8	16	12	11	6	12
GGGTGCCATTTTTTCG	ref_515_negative	178	123	221	156	142	147	134	168	165	175
CTAACGCCCGTTAGGC	ref_515_negative	1	5	10	7	8	7	16	8	6	0
CTCGTCCAGGTCCTAC	ref_515_negative	70	62	100	63	87	54	71	76	81	67
TCTAGTAACTATTGTC	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TCTTCGCTGTCACAGT	ref_515_negative	22	20	26	29	35	29	24	29	36	22
TGACAGATTGTGAAGT	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TGCTAATACGTCCTTC	ref_515_negative	46	47	53	52	53	57	59	47	43	48
GTGCGTTCCAACGGCA	ref_515_negative	203	189	214	190	177	202	191	170	240	184
GATCGGGTATTGAGAA	ref_515_negative	0	0	0	0	0	0	0	0	0	0
GACACATGAGTACGAA	ref_515_negative	0	0	0	0	0	0	0	0	0	0
GCTTTCATGAGACGTT	ref_515_negative	16	18	17	16	18	23	20	12	14	15
CCAACGGGTATTCTTG	ref_515_negative	215	168	255	192	209	198	191	181	185	203
GGACAGCCTTTAAACG	ref_515_negative	70	68	86	55	62	45	77	50	67	55
AGATGAGGGACCCGCA	ref_515_negative	37	17	45	38	27	17	22	35	19	31
GCTCTCTAATCCTGAT	ref_515_negative	0	0	0	0	0	0	0	0	0	0
TGTCAATGTTCTATCC	ref_515_negative	0	0	0	0	0	0	0	0	0	0
GACGATGTTACAAGCA	ref_515_negative	5	10	9	16	9	7	6	9	3	10
CCTCTCCCGAGAAGCG	ref_515_negative	133	112	171	120	107	130	102	111	112	89
TGTTCGATCGGGCCCT	ref_515_negative	0	0	0	0	0	0	0	0	0	0
GGACGAAAGTTCACCT	ref_515_negative	17	19	22	19	11	14	13	13	18	18
TGGTTCCCAGGCTACC	ref_515_negative	4	7	4	9	3	2	5	4	6	5
CAATTGCGAGGGCCGC	ref_515_negative	38	33	44	40	37	33	35	32	49	32
GGGTTACCGTCACAAT	ref_515_negative	52	39	71	72	59	46	60	74	70	73
AGTGTGTCCATTATCT	ref_515_negative	50	40	64	78	56	45	68	50	63	51
GTGATTGTCTTTATCG	ref_515_negative	3	9	13	4	3	5	4	7	2	4
GACAGCCCCCGAGGAA	ref_515_negative	9	27	24	24	16	19	20	28	20	19
AGTTACCATTCCGGGA	ref_515_negative	92	66	87	71	65	72	69	66	67	67
GTTTGCACCAATCGGC	ref_515_negative	91	68	77	60	73	62	67	58	72	62
TTTGACATATGTGTGT	alt_1363_reverse	38	18	43	34	9	23	20	20	20	22
CCCAAGGATCCTCAAC	alt_1363_reverse	26	18	35	42	14	39	25	33	28	24
GCTGGTTAGTATAAAT	alt_1363_reverse	40	25	26	32	18	28	22	29	18	19
TTCGTGATATCATCAT	alt_1363_reverse	5	3	2	3	1	6	4	3	5	3
GATCCTAGTTTCCGGT	alt_1363_reverse	3	2	5	1	2	1	0	2	3	4
AACTTCTATCATACCT	alt_1363_reverse	11	3	21	9	12	8	9	4	5	13
CTTTGCTTCCTAACTG	alt_1363_reverse	12	3	16	14	6	9	4	7	6	9
GTGGTTTTTTTTTTCA	alt_1363_reverse	567	282	704	622	273	555	345	556	322	480
GACTTTTCGGTTTCCA	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGTCACCGTGTCATTG	alt_1363_reverse	136	158	190	184	176	154	175	177	169	136
GTGACTCTGGTAAGGT	alt_1363_reverse	13	11	13	7	4	13	8	15	7	10
CTACTTCTTGATACCG	alt_1363_reverse	135	81	191	159	89	127	90	127	73	112
GATCGATGTCAATCGC	alt_1363_reverse	156	88	192	182	95	141	103	139	84	140
TTCGTACTTCTAAACG	alt_1363_reverse	106	49	118	104	71	80	70	122	68	75
TACGGGCGCAAGGCGA	alt_1363_reverse	85	32	93	64	41	78	28	47	42	62
CTACTTCATCTAAGAT	alt_1363_reverse	4	3	2	4	4	2	3	5	11	1
ATATTGGTAATCTTGG	alt_1363_reverse	11	6	14	6	10	7	11	10	5	5
CTTTTATATACATTTA	alt_1363_reverse	66	60	79	92	56	81	53	64	42	65
TTCTGCCTGCTGTTTG	alt_1363_reverse	7	0	8	11	10	3	6	9	4	8
TTGGTCTTTTGCCGTG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
ACACACTAGCGCACCT	alt_1363_reverse	76	63	108	83	60	73	64	81	57	65
TCCTCCTTGTTCTTAG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TTTACTAATTTTTCGT	alt_1363_reverse	36	17	50	41	15	40	34	25	35	16
CTTTTTGAACTTCGTT	alt_1363_reverse	10	10	16	13	10	18	5	20	7	11
AATTGTTTACCTAGAC	alt_1363_reverse	33	17	35	27	23	17	19	27	20	21
GCGCTGGCCAGCCTAA	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GATGCGTTAACTACGA	alt_1363_reverse	51	29	45	47	21	54	24	52	25	30
ATATAAAACAGTATCT	alt_1363_reverse	13	12	23	19	11	17	7	14	14	8
TCTAGACACGTGGCAG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTTGAGGGGCTTC	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTATTCTTGTTCT	alt_1363_reverse	8	4	7	6	6	11	3	11	9	5
TCATCCGCGTTCCCAG	alt_1363_reverse	12	12	16	12	9	17	12	26	14	15
CGTCACGGTATGCCAG	alt_1363_reverse	62	16	62	41	19	48	38	59	38	49
CATTAAGGTACCGAAT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCCCCCTCTTTGG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
ATATTCACCTTCATGA	alt_1363_reverse	138	74	166	111	86	120	60	122	79	109
CTCACGTGCCCAGAAC	alt_1363_reverse	14	10	16	8	8	5	7	22	10	13
CCAAGGGCCAGGCTCG	alt_1363_reverse	43	37	63	69	27	65	52	57	36	53
ACGTTTCCGCCACGCT	alt_1363_reverse	93	60	97	98	48	89	55	109	65	91
GTTTATTGCAGGTAAC	alt_1363_reverse	132	73	181	132	95	160	96	131	116	128
TATCCTTCCCTCGTCG	alt_1363_reverse	10	11	8	4	9	8	6	6	13	2
CATATAGTTTGTTCCG	alt_1363_reverse	47	20	69	55	32	58	29	46	26	38
AAGTCTCGGGCATCAT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
AGCCGTGCGTAGAGTT	alt_1363_reverse	12	9	12	8	24	14	18	15	18	14
ACTGACTTCATTGACC	alt_1363_reverse	175	107	227	212	130	167	119	173	128	193
TTCTTCTTCAACAACG	alt_1363_reverse	95	53	115	110	43	81	49	83	58	93
CGCTCGCACGCGGGCC	alt_1363_reverse	57	17	67	68	26	51	24	61	48	50
ACGGGGTTCAAACCCA	alt_1363_reverse	121	72	143	126	97	107	75	121	78	109
GGCCCCGGATCTTTGT	alt_1363_reverse	35	33	40	41	19	30	28	44	22	30
CGTGAGTATCCGATTA	alt_1363_reverse	22	9	27	30	17	25	13	33	13	21
ACGGATGGTCCGTCCC	alt_1363_reverse	4	2	5	4	0	4	1	1	1	1
AACTACGTTCTGGCTG	alt_1363_reverse	63	56	86	72	33	71	49	54	40	57
TCGGTATCCCGGGAAG	alt_1363_reverse	126	53	134	107	70	110	76	94	82	105
CATAGGTCAACTGGCC	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TCTGAACGGATCTTCG	alt_1363_reverse	117	75	125	113	83	109	79	93	83	98
ATAAGCTATAGGGCAG	alt_1363_reverse	37	33	58	45	23	34	16	48	26	46
ATTAAACATAAAATCG	alt_1363_reverse	255	162	363	294	167	262	181	233	148	243
AGATATCCGTACTTTC	alt_1363_reverse	2	1	6	4	2	4	5	5	5	4
ACCTTTTTCCTCACTA	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTTACGCCTGTGG	alt_1363_reverse	133	108	211	159	98	174	101	162	113	124
CTATGCCGCACTACAC	alt_1363_reverse	28	23	33	24	15	19	20	35	30	14
GGCAACGGTTTTATTG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
AATTCGGTACCGACGA	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TTACTGGCTTACTGGG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GGAATAGTGGAGACGA	alt_1363_reverse	50	16	40	44	22	33	31	30	26	38
TCATGATTACTCACTT	alt_1363_reverse	53	37	58	42	38	44	32	39	28	39
GGTTTGCATGCTCACG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
ACGTCTGAGTCTATTT	alt_1363_reverse	4	6	12	3	6	3	11	6	11	2
CCCACCCTCATGGACA	alt_1363_reverse	26	18	41	32	10	42	19	30	25	26
CTGTAAAGTCCACTTG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
CCAGAGGATCTTACAT	alt_1363_reverse	12	6	13	12	18	11	8	19	18	11
TTCAAATAATTACGCT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGCGCGTTCCCGC	alt_1363_reverse	7	8	17	10	12	7	8	12	8	7
CTTCCTCAAGGGTATC	alt_1363_reverse	6	1	5	3	5	10	2	4	4	9
ACGTAGGGTATAAAAG	alt_1363_reverse	14	3	13	14	3	5	6	3	5	7
TGTGATCGCGGCTTAC	alt_1363_reverse	50	40	63	42	31	53	35	60	28	34
ATCGGAATTGCAAGAG	alt_1363_reverse	43	18	40	49	14	36	17	38	17	51
TAACTTTTTTTTCTAC	alt_1363_reverse	46	24	44	38	18	24	19	35	21	40
TTGTAAGTAAAACGTT	alt_1363_reverse	66	46	101	57	38	68	41	53	50	56
TCTAAGGGGATTGGGT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
AGATAAGGCGTTCACG	alt_1363_reverse	43	36	54	54	31	55	28	41	20	31
ATGTGACAATATTTTG	alt_1363_reverse	80	68	117	83	47	83	55	74	58	83
TGCCACGCGGGGCTTG	alt_1363_reverse	12	5	23	12	9	8	9	18	13	10
TTCGGTAAATCAACCT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTTGCCTGCCTT	alt_1363_reverse	65	46	72	67	21	51	42	64	42	67
TTTGGGCTCTTATCGC	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
ATAATCATAAAGCGAA	alt_1363_reverse	45	49	61	60	41	47	50	45	41	36
ATGATTTGTCCTCCTG	alt_1363_reverse	43	24	54	56	23	50	26	32	31	36
TAGCATGATAGATTTC	alt_1363_reverse	35	20	40	38	18	27	20	32	23	35
TTTACGGGTAGTGTGT	alt_1363_reverse	38	28	59	44	29	31	17	38	21	33
GGGGTAGATAGGAGGC	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TATTGACGCTTAGAGC	alt_1363_reverse	163	96	176	177	111	171	113	148	137	123
TGGCCCTTACGGTGTC	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGACGGGGCGCGT	alt_1363_reverse	32	14	68	36	36	37	39	32	40	29
CCAGGTCCGTTCCATT	alt_1363_reverse	12	18	22	22	18	16	10	25	16	13
AGAGCTAGCTGCGTCG	alt_1363_reverse	3	6	9	11	11	20	7	12	2	10
TGCGTTGATCAGTTCT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TAACGTGTTTTTATCT	alt_1363_reverse	150	52	178	159	58	164	70	126	66	109
AAGCCGATCGCCTAAT	alt_1363_reverse	113	82	115	102	66	116	80	101	84	98
TGCACACACTTGAGCG	alt_1363_reverse	1	2	1	8	3	5	0	4	4	0
ATTACGTTGTAGGTGT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GAAGCACTTATCTATT	alt_1363_reverse	75	59	90	78	39	80	42	61	41	52
GGCCGGCATGTGCAAG	alt_1363_reverse	121	92	170	131	93	152	94	119	100	139
GGTTTACTGCCGGTCG	alt_1363_reverse	180	101	210	177	86	156	115	145	122	131
TAACTACTTCGCCCCG	alt_1363_reverse	265	140	287	296	163	230	154	219	171	184
GTTTTATGCTTGAGGC	alt_1363_reverse	29	9	19	20	8	18	8	16	8	14
GACACGGCGCCCATGG	alt_1363_reverse	1	1	4	3	1	4	3	4	0	3
TTGTTGTTGCAATCCA	alt_1363_reverse	65	36	64	63	53	75	50	54	29	59
ATCTTAACAAGCTATC	alt_1363_reverse	14	8	20	17	16	13	15	15	6	13
ATATCCACTCTATTAA	alt_1363_reverse	30	9	38	29	18	26	8	22	22	19
AGCTTATTATAAGCGA	alt_1363_reverse	20	18	26	36	21	19	11	17	15	25
CTTCGTTCGTCCCCGT	alt_1363_reverse	28	27	38	17	17	23	17	27	14	22
TTCAGTACATCCATCT	alt_1363_reverse	10	5	4	14	6	12	8	7	17	5
CAACTGTCCCATAGAT	alt_1363_reverse	16	10	14	18	9	3	8	16	11	12
GGAGCACCGCAGCCTG	alt_1363_reverse	64	29	87	57	34	64	38	61	39	67
GATGAACTTATATGAC	alt_1363_reverse	9	7	22	14	5	18	3	12	3	6
TAATTCTTTTTAAGCG	alt_1363_reverse	81	47	101	99	43	79	64	77	50	71
TTTACTACAACGCGGT	alt_1363_reverse	32	21	38	32	17	43	28	43	25	39
TATCGGTTTCTATGAC	alt_1363_reverse	44	25	63	38	19	35	29	33	21	38
TCACGGCTCCATACTA	alt_1363_reverse	112	81	160	149	90	133	89	137	94	104
GTGGTTTTTTTTTCAT	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
TGTGATCTTTGTTCTC	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTGGTGCGACTCG	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTTTTTTTTTTTC	alt_1363_reverse	0	0	0	0	0	0	0	0	0	0
ACACAGGCACTTCGGT	alt_5959_new	50	85	78	49	122	40	94	46	77	60
CTCGACCTGGGAGAAG	alt_5959_new	10	13	11	9	13	5	20	14	19	7
TATCCCTGCAGTTCGT	alt_5959_new	15	8	20	10	8	14	13	5	10	10
TATAGGCGAGCCCCAG	alt_5959_new	5	10	7	6	11	7	10	3	8	5
TTCAGGGATCGTCCTG	alt_5959_new	46	57	43	49	66	35	70	36	63	42
TGTTCCGGCGTTGGTC	alt_5959_new	0	0	0	0	0	0	0	0	0	0
TCAGGTATGGTTTTCG	alt_5959_new	37	66	65	55	48	43	79	37	95	40
ATTATAGCTAGGGGGT	alt_5959_new	0	0	0	0	0	0	0	0	0	0
GACATGCGGTACCGTT	alt_5959_new	0	0	0	0	0	0	0	0	0	0
ACTATGCCGCCGGGCT	alt_5959_new	113	179	136	104	174	113	206	100	179	112
TTTGACGAGTTCTACG	alt_5959_new	22	57	39	33	58	27	57	30	72	31
GAGTTAGAATTTTATC	alt_5959_new	170	261	217	176	281	142	297	123	322	156
AAGTCAATGGGCTGGC	alt_5959_new	0	0	0	0	0	0	0	0	0	0
CGCCAGGATTAAATAC	alt_5959_new	18	18	13	14	18	9	16	13	23	7
ATCGGGTTCTTATTAG	alt_5959_new	18	30	23	14	26	14	31	12	28	8
ACTGCCTGCCGCCTGA	alt_5959_new	22	45	31	17	45	15	34	19	48	14
TAGTTTTGACTCATGA	alt_5959_new	18	50	33	22	53	18	43	14	52	19
CTCGCGCCTGGTCTGT	alt_5959_new	8	16	9	8	20	9	18	8	23	8
TTCAATCGTTGCATCA	alt_5959_new	0	0	0	0	0	0	0	0	0	0
CACGGAAAGCATGAGC	alt_5959_new	9	18	11	7	20	9	18	10	22	5
ACAGCAGGCTTATTTC	alt_5959_new	33	66	49	45	76	30	77	38	58	26
GTATTTTCAGCACATG	alt_5959_new	1	6	4	5	5	1	2	0	5	1
GCAATTCGCTGATCGG	alt_5959_new	32	47	23	17	68	28	56	28	47	35
CGGTGAACCCCTTCTT	alt_5959_new	17	20	25	27	35	14	26	19	23	12
CGAAGTACCAGTGGGC	alt_5959_new	0	0	0	0	0	0	0	0	0	0
TCGCCGTCCTGACAAA	alt_5959_new	52	61	51	42	56	34	72	31	68	31
CCTAAATACTTCATCG	alt_5959_new	42	69	63	42	93	43	93	45	79	42
GCGTGTAATAACTCTT	alt_5959_new	0	0	0	0	0	0	0	0	0	0
CCAGTGCGCTTGGTCT	alt_5959_new	26	54	27	21	39	26	54	13	52	19
ATTTGAGTCATTTGGG	alt_5959_new	0	0	0	0	0	0	0	0	0	0
GTATTGTGCATCATGA	alt_5959_new	0	0	0	0	0	0	0	0	0	0
ATACTGCCGCGCTATT	alt_5959_new	0	0	0	0	0	0	0	0	0	0
ATTTTACACGGGAACA	alt_5959_new	21	37	26	32	41	10	42	34	54	21
TAGATTATGTTTACGG	alt_5959_new	0	0	0	0	0	0	0	0	0	0
CTTACGGCATGAATGT	alt_5959_new	67	119	74	86	104	56	102	53	118	56
TTAGATTTCAAAGTTC	alt_5959_new	202	348	255	206	432	189	369	163	409	206
TTGTAGTATATATTAG	alt_5959_new	0	0	0	0	0	0	0	0	0	0
ATAGATTTCAAAGTTC	alt_5959_new	0	0	0	0	0	0	0	0	0	0
TCATTCGATCGGCAGC	alt_5959_new	29	43	39	21	25	38	39	31	52	26
GTATCCTTCATTGCGC	alt_5959_new	39	61	51	31	75	27	67	32	57	31
GGTTTGCCCAATTAGG	alt_5959_new	32	67	34	36	70	59	71	51	67	31
AAGCATCATTCGAGGG	alt_5959_new	30	36	36	24	37	32	43	15	47	26
TTGGAATCAGTAAATA	alt_5959_new	15	23	16	11	39	19	37	8	26	14
GGCTGGTTTCGAACCT	alt_5959_new	25	39	31	23	52	30	42	25	39	26
GTCACATTGGTGCGAG	alt_5959_new	33	34	31	33	53	30	42	19	54	20
CTTTAACATCTAAACC	alt_5959_new	16	43	38	22	61	28	45	27	43	29
TTGTATTGCCCTTTGC	alt_5959_new	16	23	30	24	27	16	35	19	35	14
GCATATTCATGGGTAT	alt_5959_new	34	48	34	33	50	33	35	28	58	26
GGCTGCAGGCATCACT	alt_5959_new	18	41	37	18	45	20	48	28	52	21
TTGTAGATTTGACGGT	alt_5959_new	35	32	22	23	36	20	51	29	46	15
AGTCCCTAATCACAAT	alt_5959_new	41	64	34	33	72	47	63	21	66	22
CATCCGTGATCTCTGG	alt_5959_new	6	26	18	23	44	9	24	17	23	11
TTCGCTAATAAGGTCG	alt_5959_new	12	18	10	17	37	12	30	9	22	14
GTCTGTAACCTAATTA	alt_5959_new	55	89	61	68	116	39	119	72	113	67
CTCTAGTCAGTCTTCT	alt_5959_new	10	20	16	10	19	8	28	7	35	18
CGTGTGTTGACCGGAG	alt_5959_new	11	22	21	19	23	19	36	20	43	16
GAAGCGCTTACTGATT	alt_5959_new	68	129	87	68	119	82	156	63	143	75
ATCATTGTAGTATCTT	alt_5959_new	34	51	40	38	42	46	50	29	41	28
TGTAGTACGTGACGTA	alt_5959_new	95	158	91	106	141	114	158	98	139	82
AAGCTTTGGCTATTAG	alt_5959_new	15	20	18	15	24	11	34	11	17	14
GCGTTGGTTACCATGG	alt_5959_new	48	76	62	49	105	56	93	47	85	51
GAGCCAATCGACTGAC	alt_5959_new	5	16	11	2	13	2	10	6	14	1
TTATGGTGCTTTCCCA	alt_5959_new	57	84	64	52	68	47	83	32	82	39
TCTGCATTGAGTGGTA	alt_5959_new	10	23	13	7	26	13	18	11	20	7
GTTGTTTAGGCCTCTG	alt_5959_new	11	27	16	14	29	13	37	17	25	14
GTTCTTCTGACTGTAC	alt_5959_new	0	0	0	0	0	0	0	0	0	0
AGTTTCATTGCGCGTG	alt_5959_new	27	47	21	18	56	26	49	32	54	20
ACCATATCCCTAGTGC	alt_5959_new	22	51	25	28	39	11	47	20	49	16
CATGGAAATTTTAACT	alt_5959_new	3	7	2	1	5	0	5	0	1	2
CCTGGCCCTCTTCCTC	alt_5959_new	33	64	20	22	47	24	38	21	48	25
TCGTCGTCCAGCGCTC	alt_5959_new	6	5	1	0	0	3	2	0	7	3
ACGTGTTTAGTTATAC	alt_5959_new	29	47	19	27	56	10	64	21	74	12
CCGTGTAAAGTGGTGA	alt_5959_new	23	90	33	27	93	22	94	22	100	34
GGAGCCATTTGACGTA	alt_5959_new	9	14	6	9	15	6	10	14	17	9
GTCTTTGCTCGGACTT	alt_5959_new	36	92	58	43	113	49	116	47	127	63
TTTCAACAGGATGATG	alt_5959_new	55	84	74	51	69	49	88	63	103	49
TTGTACACCGCGCAAA	alt_5959_new	3	18	8	8	13	9	19	16	11	7
TTTGGGTACGGACCTT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TATTACTCATTAAGTG	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
AGAGACACGTGGTCAG	alt_1402_fdr	52	47	67	60	37	47	56	56	46	67
GGTTATTCTTGACGGT	alt_1402_fdr	15	6	14	10	13	10	10	9	14	7
ATTGTGTCTTTCGATC	alt_1402_fdr	43	22	47	24	14	32	25	26	23	30
GCTTCACAATATAATC	alt_1402_fdr	9	6	15	6	9	8	8	16	3	6
ATTCTACCTGAGTCCT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
GACGGGTCAACAGAGC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CTGCACCGTCCAAGCG	alt_1402_fdr	3	6	9	6	1	11	1	8	7	11
TTAAAGGGTTACCTTG	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
GACGCTAGCCCATTTA	alt_1402_fdr	84	84	83	90	96	53	77	68	78	80
TCGCGACGGGCCCGAT	alt_1402_fdr	129	72	128	133	103	120	98	111	112	117
CAGCTCAAGCCGGTTA	alt_1402_fdr	93	67	127	105	65	103	84	96	85	96
AAGCATTTTCCGCTCG	alt_1402_fdr	19	8	21	7	17	20	19	18	15	20
CAGAATGGATAGAGAC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TGATGTGATATTCGAA	alt_1402_fdr	5	2	9	8	3	7	5	4	4	3
TGTCATTTAATCCGCG	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCGGACTTCCTA	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTTAAGGCGTGGT	alt_1402_fdr	58	48	62	43	55	57	47	48	55	32
GGGCTCCTAAACTCGG	alt_1402_fdr	4	10	7	6	9	7	3	6	5	8
ATATGGGACCTTGTAT	alt_1402_fdr	3	1	9	11	4	4	4	8	3	8
CTCCTAGCGCGATGTC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CAACACATTAATGTGC	alt_1402_fdr	105	80	106	125	97	107	126	92	83	108
TGCTCTAAGTTCAATG	alt_1402_fdr	29	43	34	36	41	23	36	32	35	34
GGAATAAGGCTCTGTT	alt_1402_fdr	50	34	52	45	39	51	46	42	34	37
GACTTATCCAAGCTTT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGGGGGTGTCCTC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTGACTAGCTACTCCC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TACGTGAATATAACGG	alt_1402_fdr	27	18	36	34	31	32	21	24	18	23
TTCTAAAGTCGACGGA	alt_1402_fdr	129	105	143	143	91	121	98	100	95	109
TTAACCCGGCAGCTAG	alt_1402_fdr	9	9	3	17	7	5	6	13	10	10
GTAAATCCACACTCGT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TAACTCAGTCAGACTG	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGAGACCTTGGAC	alt_1402_fdr	52	31	69	57	36	55	65	41	38	45
GATGGCGCCTCGCCGG	alt_1402_fdr	12	7	15	14	16	17	20	18	17	14
TTCCTGTAAGGTCTAG	alt_1402_fdr	17	9	24	8	11	13	13	22	13	10
TGGATGTTTTTCCCCC	alt_1402_fdr	31	22	34	42	14	26	22	18	23	36
TCTTAATGCTACATCT	alt_1402_fdr	131	104	164	119	93	151	114	124	128	120
GTACGAAAGTCTGGCG	alt_1402_fdr	132	100	147	159	113	122	115	120	134	137
GCTTCGAGGTTTTAGA	alt_1402_fdr	10	23	27	10	12	17	12	15	21	15
CTCCAGGAATCAAGGG	alt_1402_fdr	198	310	195	185	335	181	302	185	372	149
CCGTTGGTAGATGCCC	alt_1402_fdr	134	98	204	149	115	136	108	149	108	124
CTTCTTTAGGCCTCTC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACATATCATCGT	alt_1402_fdr	40	32	62	61	49	47	49	50	41	37
ACAAAATAATATGGGC	alt_1402_fdr	26	23	33	36	26	25	20	30	20	18
CTTGCGTACGCATCTC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CTCATATCATCGCCTG	alt_1402_fdr	21	38	29	31	32	22	27	20	34	28
TCTATACCTGTTACCT	alt_1402_fdr	8	10	14	13	6	7	9	10	6	9
ATAGTTTCTTTTAGTA	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCCATCAGTCATT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTGACCACTTTTC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCGTGGACTCTAT	alt_1402_fdr	96	72	106	70	55	62	62	80	49	64
TTCCTAATGAGTGCTT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATTAAGTTGCCGGGGC	alt_1402_fdr	36	34	46	45	25	42	24	35	32	22
CGCTTATTCTGCCTTA	alt_1402_fdr	25	23	35	42	16	30	30	41	35	19
TATACCTCCAGAATGC	alt_1402_fdr	31	19	31	20	15	24	17	22	26	22
TATTAGGAGGCCAGAT	alt_1402_fdr	40	32	57	48	42	42	40	50	41	39
GTCCGGCATTACATTA	alt_1402_fdr	134	93	123	119	91	101	102	100	94	112
TCGTTCAGTACCAACC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCTGGTCCCCTTA	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCGCGTAGCGGTT	alt_1402_fdr	41	29	55	65	42	45	33	46	32	47
TGTCATTCGTCGTAAC	alt_1402_fdr	44	19	42	43	28	29	34	19	36	26
TCTCATAGCGTCCAAG	alt_1402_fdr	36	34	54	47	33	34	37	36	34	43
GTCCCGTCCGAAACCG	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CTTTAGAACAGCCACA	alt_1402_fdr	22	10	17	12	23	19	27	12	24	17
GTCCGGTGCCATTTGT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTTTACTTATCAT	alt_1402_fdr	63	60	73	43	73	43	48	52	51	48
AGATCCAACCCATTTA	alt_1402_fdr	10	18	19	17	7	11	7	22	15	16
TGAACAGCGTTTCCTC	alt_1402_fdr	258	214	338	317	216	247	226	255	249	251
CGTGAAATCACGGGTC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
GCGAGGCATGCAGGCC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CTGGCACTGCTTATCC	alt_1402_fdr	84	70	89	84	54	94	63	69	81	84
CGATAATCATAACACT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TACTTTCCTTCCTCTC	alt_1402_fdr	17	3	6	6	9	12	5	11	4	5
AACCATTTAATAAATT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATCGACATCCTC	alt_1402_fdr	37	29	45	45	36	26	18	37	34	28
CTTCGGTATCTCTAAT	alt_1402_fdr	72	72	97	82	69	80	67	81	53	57
TGGCGTAGCGGGGTAA	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCCGACACACTT	alt_1402_fdr	72	69	95	86	71	65	58	62	55	77
TAGAACAAACCTGAAT	alt_1402_fdr	36	34	33	36	50	29	47	34	51	31
TTTGGCTTTATGGCAA	alt_1402_fdr	10	13	13	6	8	5	7	11	5	4
CTGTGAGTACTCGGTA	alt_1402_fdr	66	59	76	85	45	56	48	39	61	48
TAGACCGTTCGTGCGC	alt_1402_fdr	55	50	73	70	59	48	60	53	59	49
AATTTCCTGTCTCTGA	alt_1402_fdr	36	26	37	36	20	32	38	32	25	19
TGTCCCATACAATACA	alt_1402_fdr	125	96	145	128	97	122	102	99	132	97
TTTCGCGGTTACGCAT	alt_1402_fdr	24	20	45	39	35	31	19	33	16	41
TCTTTTTGTTTATAGA	alt_1402_fdr	33	30	53	34	44	51	24	41	37	52
CTACAATCTATCAGCT	alt_1402_fdr	35	35	37	31	23	37	36	37	52	41
CTCCCGTACTTGCACC	alt_1402_fdr	4	3	1	2	7	2	5	3	9	1
ACTTTACCCATTCCTC	alt_1402_fdr	42	35	61	42	44	47	54	52	42	49
CCCAGATATCGTTGCC	alt_1402_fdr	54	20	50	54	45	34	31	40	40	36
GCCCTTATCCACCTGA	alt_1402_fdr	6	8	8	4	6	7	6	4	12	7
CACGCCGCATTATTTA	alt_1402_fdr	6	12	17	2	11	5	8	5	15	3
AACTGGGCTCTACAAG	alt_1402_fdr	90	77	142	99	87	80	80	107	85	105
CATCATTTAGTCTCTA	alt_1402_fdr	76	65	88	87	68	72	67	61	60	78
AAATTGTCTTCATTTG	alt_1402_fdr	72	52	84	79	73	71	65	90	65	75
ATTGTGCTAGATCAAT	alt_1402_fdr	93	115	117	111	101	109	96	87	127	99
TATTGGATGCATCAGT	alt_1402_fdr	20	9	13	20	4	9	15	10	14	12
GAGGAACTGTTAGTTT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCAGCATAACCTA	alt_1402_fdr	62	52	78	44	55	72	60	64	57	60
GCTCTTGTGTGATTTT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGTTGTGACTTCT	alt_1402_fdr	24	26	39	44	25	33	26	28	24	23
CTGCCTTTTCTTCCAC	alt_1402_fdr	32	27	40	25	37	26	14	15	30	23
GGTACAGGCCATCAGC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CCCTAATACCTAACTG	alt_1402_fdr	28	19	36	23	18	17	25	15	17	22
TTCAACATCAGCCAGT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGGAGGTATTGGC	alt_1402_fdr	47	100	60	67	93	53	103	54	110	68
ATTCCCGCCTTTCACA	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CGTTGGTACTTTCTCC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
GCTTCGAGATTTTAGA	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
GGCCTCAAAAGTAATG	alt_1402_fdr	26	20	34	23	20	19	13	24	15	22
GCCCCTTTTTCTACTA	alt_1402_fdr	6	10	7	6	7	9	6	16	13	7
CCATGGCCTAAAGCTC	alt_1402_fdr	53	33	80	73	64	57	38	68	37	54
TTGTGTAATTCGAGGT	alt_1402_fdr	70	87	109	83	64	81	89	54	74	80
CGCGTCACCATGGCCG	alt_1402_fdr	22	13	25	17	8	21	11	12	23	10
CGCATCTCAATGCTGC	alt_1402_fdr	9	13	9	7	14	10	18	4	8	6
GAATAGTTTGTCTCGC	alt_1402_fdr	3	4	4	3	4	2	3	2	2	4
GCACGTCTTACCAGGC	alt_1402_fdr	17	16	11	14	7	4	11	22	16	15
TCTAATATTGCCACGC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGAATATGGTTCC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
TATCAAGGTCAAATCC	alt_1402_fdr	113	104	157	142	124	105	104	113	99	90
GGACCGCGGTGTGGAG	alt_1402_fdr	6	8	17	5	11	14	9	22	8	9
ACTAGCCAATCCGGCC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTAGGTCGTCTCG	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGCGCATTTACAT	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ACACAGAGTGAAGTCC	alt_1402_fdr	18	17	22	18	7	12	13	25	16	24
AATACGCGACTCACCT	alt_1402_fdr	10	56	23	13	66	11	47	11	49	9
TGAGGTGGCTGTCATT	alt_1402_fdr	33	19	34	44	18	36	22	25	26	21
TACAGATGAACATGTT	alt_1402_fdr	125	85	163	131	96	130	95	138	89	93
GCTTCGCTACCGTCAG	alt_1402_fdr	11	16	11	15	19	15	18	16	24	10
AATTTTACCCTAAAGG	alt_1402_fdr	97	64	118	84	64	89	81	91	90	74
CTTCTAGTGAATGTGC	alt_1402_fdr	12	17	17	8	10	10	16	15	12	3
CATTCTCTAACTCAGG	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGTATGGAGATGC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATTAAATGCGTTGGGC	alt_1402_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTCGTTTACGCAG	alt_1402_fdr	5	4	3	3	2	4	2	5	1	3
GTTTGTGTTTCATCAG	alt_1402_fdr	12	5	16	12	9	10	12	17	7	17
GCTAGTGGTATCTATC	alt_1643_reverse	7	13	4	14	9	3	7	7	15	3
CGAACTGACTGGGATC	alt_1643_reverse	11	20	17	8	23	10	13	15	22	11
TGGATGTTACGTACAA	alt_1643_reverse	17	36	22	25	47	29	60	28	46	19
GGCTTTACATGATGTC	alt_1643_reverse	58	103	78	75	51	78	67	62	75	65
ACGTATGTAACTGGCA	alt_1643_reverse	91	103	77	63	139	58	111	82	135	54
CGCGCACGCCTGTGAT	alt_1643_reverse	38	50	45	38	41	28	37	29	43	42
TGGTATATGTCCTCGT	alt_1643_reverse	41	55	59	39	65	44	67	44	51	49
ACTATTATCTGTTGGG	alt_1643_reverse	16	16	11	13	28	15	23	23	20	20
ACTGTCGGACATCCAT	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
CACTCAATAATCGCTT	alt_1643_reverse	136	220	210	171	204	127	270	148	277	135
CGCCGTGTCCCAGGAG	alt_1643_reverse	12	24	14	11	22	15	23	11	27	11
CGTCGACCTTATAACG	alt_1643_reverse	23	44	23	19	44	22	45	18	29	23
TTCTGATAGTCTATTC	alt_1643_reverse	13	30	16	18	20	19	27	12	43	19
ATGTGGCTCTTGGGCT	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
TACTGGCAGGGGTATT	alt_1643_reverse	4	3	3	1	5	0	3	3	3	5
TTCGTCTTTCTGCCAC	alt_1643_reverse	28	47	49	31	35	36	56	24	40	34
CTGCTGACCCTTATTC	alt_1643_reverse	18	30	25	31	21	20	29	28	32	24
CAGATGGGTCCCGCTC	alt_1643_reverse	53	54	68	57	71	50	64	50	80	63
AAACCGGTTCTGCGTC	alt_1643_reverse	39	47	35	28	38	28	34	31	54	24
TACTAAACAACGTATC	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
TTTACCTCCGAGACAA	alt_1643_reverse	9	16	14	12	13	13	16	12	10	14
GACCCGGTTAAAAAGA	alt_1643_reverse	3	4	6	8	7	8	4	1	9	6
TCACGGTCAACAGGGT	alt_1643_reverse	11	21	16	19	21	15	18	10	22	13
TTTGAAGTGGGCGTAA	alt_1643_reverse	15	28	20	12	15	14	15	10	21	6
CTTCGTGCGTACCTCC	alt_1643_reverse	36	183	54	50	158	52	183	47	207	35
TGGGATCCCGTAGTGG	alt_1643_reverse	164	204	221	206	203	174	229	164	261	126
GAGGTAGTTACGTGAG	alt_1643_reverse	31	50	39	40	59	23	61	38	48	41
CCTACTTCTCCGTATT	alt_1643_reverse	12	18	16	15	22	21	26	10	22	17
GGACGTATGGGTTCAG	alt_1643_reverse	11	8	3	12	12	4	3	13	7	3
CTCGGCACAACAATCG	alt_1643_reverse	30	47	45	21	35	35	30	23	43	23
TGTCTTCTCTGATTTT	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
TCCTATTGCAATAACC	alt_1643_reverse	2	6	4	2	4	4	5	5	8	1
CTAGCCTAGTAATTTG	alt_1643_reverse	17	43	21	20	38	32	43	20	49	15
GCCGTCATTTGTTCTC	alt_1643_reverse	16	25	21	21	22	16	32	12	26	13
GTAGGGGTAAATTGAC	alt_1643_reverse	24	32	35	13	40	25	37	26	32	10
GCTTGGCGTTCAAATT	alt_1643_reverse	41	51	37	37	48	33	38	34	65	32
CTTCCACCATGTGAGT	alt_1643_reverse	25	35	32	28	36	13	31	19	27	15
TGCTTTGTTAACGTCA	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
CACTTTATCTTCAACG	alt_1643_reverse	84	134	114	87	129	119	159	105	151	82
TCTTATTGCAATTTTG	alt_1643_reverse	13	9	9	13	12	11	26	13	16	14
GTTTTTTCTTCCTATA	alt_1643_reverse	26	33	13	22	19	15	25	24	33	16
GGTCATTGGCTTAACC	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
AACATTTGGTCGTGTG	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
TCTGACCTGCTTTGCT	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
TATAACTGTGACGGAC	alt_1643_reverse	5	8	0	1	5	3	3	1	7	4
GCGTTCACTGATGTGC	alt_1643_reverse	0	0	0	1	0	0	1	0	1	0
CTGTTTACTCTCGCTG	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
TAATTATTTCCCTGTT	alt_1643_reverse	5	10	10	6	4	9	10	9	6	11
GCCTTAAGTTTACTTC	alt_1643_reverse	4	6	2	0	8	2	5	1	7	4
CTTTGGCCATTCCAAC	alt_1643_reverse	24	54	34	29	52	25	53	16	63	18
TCATCGGCGTGCTGAG	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTAACCCGCGGTT	alt_1643_reverse	15	29	19	23	33	15	31	12	29	10
ACTTTGGTGTGTCATT	alt_1643_reverse	21	29	19	15	25	22	25	10	17	10
TGTATTTCACTCGCGT	alt_1643_reverse	13	15	11	9	20	10	15	8	18	8
TTTGTCCGATAAGATT	alt_1643_reverse	25	36	35	29	55	28	40	15	46	14
TCAGATGAGCTGGTTG	alt_1643_reverse	14	10	24	15	21	21	20	16	20	18
CGTCAGGCTCTTTACA	alt_1643_reverse	31	50	31	27	75	27	59	28	57	18
CTAGATTCACCGAAGC	alt_1643_reverse	36	59	30	62	66	35	69	43	74	22
AGCCTGACGCAGTTTT	alt_1643_reverse	11	8	12	7	11	8	13	9	12	9
GGCATCGGGTTCTAGC	alt_1643_reverse	7	14	14	13	13	9	9	9	16	8
ATCAATTTAACAATTA	alt_1643_reverse	12	7	10	6	8	10	7	12	10	4
TCGCAGGAATTAAGCG	alt_1643_reverse	4	14	8	16	19	5	9	12	18	6
TTTTTCCTTTCTTGCT	alt_1643_reverse	31	31	35	40	12	30	30	30	36	25
TATGGTGCCACGCCCT	alt_1643_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTCACCGAGCGC	alt_1643_reverse	3	4	4	3	3	3	6	4	5	1
CTTGCTAAATTGGCTA	alt_1643_reverse	32	51	48	32	65	47	60	33	63	46
TGAGCACAATTGTAAG	alt_1643_reverse	34	41	31	28	42	29	47	43	46	10
CGGTCTATGATTGTAC	ref_5837_new	1	8	3	3	8	2	4	3	5	1
GAGCCCTTCTTTTGTC	ref_5837_new	35	75	62	64	82	54	66	46	72	38
GCTCCGGTTATGTGAC	ref_5837_new	12	16	14	11	22	7	15	16	17	10
AGACCCAGCAAAGTAG	ref_5837_new	19	31	20	27	33	21	39	20	40	25
TTGTATCATGTCTGTA	ref_5837_new	24	39	23	16	24	18	26	20	43	20
GCCGTAGCACGTCCGT	ref_5837_new	4	11	4	10	3	2	7	2	5	5
ATATAAAAACTTAATT	ref_5837_new	3	5	5	2	7	9	10	5	3	3
ATGTAATGACTCGTTC	ref_5837_new	10	15	9	14	14	8	14	12	10	4
AACGTGATGCCTTACG	alt_5837_new	19	38	32	22	40	29	56	33	57	25
AGTACACTGAATCGAC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CGTATTTGATATACTC	ref_5837_new	13	18	13	17	23	5	29	16	29	15
GCTAACACAAATGTAA	ref_5837_new	27	40	24	30	36	32	62	23	50	32
TGTTTTTTCGGTTACA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
AAGGGATCCGCTTAAC	ref_5837_new	3	2	3	1	2	2	8	5	5	7
CTTCCGGAAAACCGTT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTGTCGCACACTGATG	ref_5837_new	73	154	111	89	139	80	193	89	167	61
TGGTGCGTGTACCAGG	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTTTTTCGCTCTCCTA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TATCTACGGACGCCCT	ref_5837_new	14	22	13	14	19	10	21	5	18	11
GCAAAGTTCCTTTCAA	ref_5837_new	115	144	121	100	100	115	120	118	135	105
GATCGCCGTATATGGC	ref_5837_new	29	31	29	20	39	19	38	17	49	33
GCGCTCAGCGTTATCA	ref_5837_new	28	42	43	30	34	29	55	22	54	22
TTATTCCATCAGTACA	ref_5837_new	158	295	184	180	280	149	317	150	301	150
GGGGGGTGAACATTCA	ref_5837_new	67	91	81	52	92	61	115	75	114	68
CATACTGGAGCTTATC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TCGCGAGTACTGTACC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
AATGCGTCTCGGAAAA	ref_5837_new	19	36	26	26	44	17	34	27	40	25
TGTGTCTACGTAGGCT	ref_5837_new	23	26	15	12	55	17	41	24	32	14
GGTCAATATCTTAGTG	ref_5837_new	10	13	6	12	19	13	13	8	19	3
GTCAGTGCCTATGTGG	ref_5837_new	5	7	11	7	9	7	15	0	7	5
CCACCACCCTAACTGC	ref_5837_new	9	42	18	14	31	14	54	15	49	13
GGACTGCCTGGAATCG	ref_5837_new	39	59	52	33	77	39	76	35	64	32
TTCCTATTTCACTCCC	ref_5837_new	1	47	3	3	25	5	49	4	43	4
TTCGCTCAGTCTAGAA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TGAACTCGGGCAAACT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
GATTATTCTACAATTT	ref_5837_new	27	24	20	13	38	18	25	11	24	20
CCTACCAGTAGGTGCT	ref_5837_new	4	21	11	7	14	5	8	6	10	6
TAATAGTTGAATAGGA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CCTTCTGTTTTTTAAG	ref_5837_new	68	103	58	52	105	52	107	52	127	52
ATAGATGTCTTTTGTC	ref_5837_new	30	38	32	19	36	34	42	19	42	12
CGTAGGATTAATCGTC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CTATGCTGACCGGCTG	ref_5837_new	14	21	22	19	25	14	15	18	27	18
GGATTGTTTGAATATG	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TGCTACGAGACTCGCG	ref_5837_new	2	3	6	7	5	1	4	5	3	2
TGGTGATGAAGTTATT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TGATGTTCCACACCGC	ref_5837_new	7	9	6	5	5	5	11	11	2	4
CCTCAGTAGTCCAAAT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TGCCCCTCTTCCTGGA	ref_5837_new	17	31	33	28	35	25	42	20	36	40
AGTAGCAAAGCTAGCC	ref_5837_new	9	10	10	9	16	9	8	4	21	5
TTTCCCTGTCTTTTGC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TCACGCGAAGACCTAT	ref_5837_new	13	14	18	11	30	16	22	13	18	11
CCCCCACGTCGTAGCA	ref_5837_new	15	33	31	8	25	16	42	11	35	11
CCCGCTAAGCTTCGCA	ref_5837_new	6	27	20	9	28	10	10	13	25	6
AAGCTTGCAAATCTGC	ref_5837_new	5	14	5	9	14	10	17	7	20	7
GTCGCTGTTGATCTTA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CACCGCCCGCAATCTC	ref_5837_new	30	37	22	20	45	21	41	23	43	17
AGGCTACGTTAGGTGG	ref_5837_new	54	89	62	49	99	57	99	51	101	49
GCGTTCACATACTCTT	ref_5837_new	6	15	21	3	15	8	7	6	11	3
TAGTCATAGGGTCAAT	ref_5837_new	23	31	37	27	41	31	40	17	55	31
CGTAACCTGTTTGCAT	ref_5837_new	40	73	41	49	73	32	66	42	80	31
ATTTGCACTCCTCCCG	ref_5837_new	14	16	6	3	29	11	18	5	19	4
CTGACTCTTCTACAGT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CATCTTTGAGGCTTCA	ref_5837_new	41	72	48	47	67	39	56	40	63	48
GCAGTTGATCAGCAGG	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CGTGTCGTAAATCACT	ref_5837_new	37	39	35	41	44	31	47	27	47	37
CTTACCGGTCTTTGCA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TGCACTCTTGGTCCAG	ref_5837_new	10	25	16	17	32	16	21	15	18	9
TCATTAGTACTTGGTA	ref_5837_new	6	6	9	6	10	7	15	8	12	6
AATTATTACGAATATT	ref_5837_new	30	41	36	21	39	27	52	35	45	31
CGGTGCGAGCCCGAAT	ref_5837_new	2	7	7	5	6	3	5	3	6	1
TACGAATTTTTGATGC	ref_5837_new	36	52	43	28	56	35	51	33	39	34
GAAGGACCGCTGCGAC	ref_5837_new	4	3	5	3	5	2	9	4	4	3
CACTAATAGTGTCTTA	ref_5837_new	30	37	27	15	34	26	51	16	42	12
AGTATCCAGACGGCTC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
GGTTGCGTGGTTCTTC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TCCTACCTATACAGCG	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TGCGATATGTTACGCT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTATATTATAGTCCGA	ref_5837_new	287	400	387	289	421	283	436	233	428	278
ACTGCATACTGTGCTA	ref_5837_new	0	2	1	1	2	1	1	0	0	1
TCCTTGCTCGTGTGCC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TAGAATTAATCGGTGG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTTTTCGCTCTCCTAA	ref_5837_new	101	131	83	83	141	98	141	87	139	90
GGTACCCCTCCCCAGG	ref_5837_new	0	0	0	0	0	0	0	0	0	0
AGCTGACAAGGAATTG	ref_5837_new	15	18	5	10	7	11	6	7	11	4
CATAATCTATGATTCT	alt_5837_new	18	19	14	17	12	13	24	18	20	9
TTGCAAAGTTTTCTAA	ref_5837_new	64	111	94	85	124	68	148	61	125	75
AAGCGTCCGGCCGGGC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
GGGTTCTCAGCGCAGG	ref_5837_new	10	12	11	13	15	12	15	10	20	10
CCCTGTCATGGTTTAT	ref_5837_new	16	44	26	21	60	16	52	21	62	19
CATAGATCTGTATATG	ref_5837_new	34	63	48	46	53	42	56	36	67	33
ATTCACACGCGGCTAT	ref_5837_new	32	48	41	16	36	28	52	20	36	13
GAACAGTGCCTTCATA	ref_5837_new	27	61	27	57	68	39	80	47	76	40
CGTGTCCTCAAATTGC	ref_5837_new	21	16	20	10	37	13	33	13	32	14
TGTGCCGGCTTTACGG	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTACTAATAAATGCCT	ref_5837_new	0	0	0	1	3	0	2	1	0	0
TTCCAATATTCGTCAC	ref_5837_new	11	11	16	10	23	4	26	9	27	12
CATACGGAGATGGTGC	ref_5837_new	78	91	76	69	117	76	107	62	118	52
AACGGGTTGGACATGA	ref_5837_new	8	10	17	6	15	13	20	11	20	8
GGCAGCAGGGAAAACA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
ATACCGGCATTTGGTC	ref_5837_new	9	11	19	13	16	9	21	17	19	14
TTCCGTTGTATGACTA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TGCTCAGTCTAGTCAG	ref_5837_new	0	0	0	0	0	0	0	0	0	0
GTTAAAGGTGAACATG	ref_5837_new	10	10	10	6	7	6	12	3	14	5
TGAGTATCATGTTTAT	ref_5837_new	35	50	38	28	58	32	59	18	56	33
GACTCCATTCTGGGCA	ref_5837_new	4	13	9	13	5	7	15	3	14	5
TATAGACGGGTGCCTG	ref_5837_new	4	7	10	8	15	6	11	6	14	6
TTTGAAGGATTTGCTT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTGCTTGTTACTGTTG	ref_5837_new	7	12	10	6	5	3	16	6	11	6
GCGTTCTTAGGAAAAC	alt_5837_new	30	50	41	48	68	42	54	38	56	49
AGACTCGGGGTAATTA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
ATGCGTTTTTATGCGT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TATCTACACAGCGGCT	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTGTACAGCGGTCGAT	ref_5837_new	2	8	3	4	6	2	7	4	9	1
GTTGCGGTAGGTCGTT	ref_5837_new	50	73	54	47	67	38	86	44	63	34
CGCTAGTGGTTCCCTT	ref_5837_new	29	21	30	11	48	15	40	17	39	18
TCCATCAGGCTTTGAT	alt_5837_new	39	100	70	51	86	54	101	47	110	57
GCCAGGTTTCTTACGT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
GGGGCACTTTTTCCCG	ref_5837_new	61	94	67	43	84	49	90	50	91	68
CTACATGCTTCTCCGA	ref_5837_new	62	119	90	63	116	56	98	80	135	76
CATTTCTCTCGGGACT	ref_5837_new	12	18	12	12	16	16	14	15	22	10
CATTGTCGAATTTATA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTATATTACAGTCCGA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
TTGGTCAGAATCGCCT	ref_5837_new	6	5	2	4	2	4	12	3	4	6
TACCCTGATCCGGTTC	ref_5837_new	45	59	55	34	75	34	72	33	61	27
CGCAGATGAGTCGCCG	ref_5837_new	23	74	40	25	49	30	75	23	72	22
TTCGCTTGTCTATCCG	ref_5837_new	20	24	17	22	28	13	19	13	38	11
CCTCGCTTACCTGCAC	ref_5837_new	0	21	3	0	23	1	14	1	16	1
AGTCCCCCATAAATAA	ref_5837_new	5	11	16	12	11	7	18	12	10	12
AGAAATTATCCCACTG	alt_5837_new	38	70	60	54	79	47	69	37	91	39
ACGCCTTGCTGGACCT	ref_5837_new	14	4	5	6	14	12	7	4	15	9
CACGTTATTGCTCAAT	ref_5837_new	6	9	12	6	12	7	8	3	14	4
TGTCCAGAAAGTCTTT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TGGGCCTCAATCTGGG	ref_5837_new	9	21	20	8	15	6	18	4	21	8
TCGTTCGGGACCGCAC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
GCCCAACGTCTTTTTC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
ACGGGACTCAAGGAAC	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CAACTGCCTTGGGGTA	ref_5837_new	0	0	0	0	0	0	0	0	0	0
CTTCTATGACCGTCTC	ref_5837_new	7	10	5	9	11	4	6	4	11	5
GCGATTCTCTGAACTT	ref_565_RC	16	24	17	13	22	13	12	25	14	15
CCGGGCGGCGCCTTTC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
TACGGGGTTCCATGTC	ref_565_RC	10	19	17	8	16	13	10	12	17	14
ACCATTAGATTTAGAT	ref_565_RC	50	67	54	34	53	46	51	39	46	40
CACTTGAACGGATCTT	ref_565_RC	16	28	17	26	29	12	26	15	19	13
TGACGGACACTCCGCA	ref_565_RC	5	10	8	7	21	7	12	6	18	9
GTACCTGTATACAGCA	ref_565_RC	0	0	0	0	0	0	0	0	0	0
AATTGGGCCCCCCTTT	ref_565_RC	10	14	10	9	8	8	8	7	18	14
CATGCACGCCCCCCAA	ref_565_RC	0	0	0	0	0	0	0	0	0	0
TGACGTCCTGAAGGTT	ref_565_RC	68	72	107	81	103	80	77	78	112	93
TGCAGGTCACGCCTTA	ref_565_RC	12	15	9	15	17	15	12	9	21	15
CGGCTTTACTACCGCC	ref_565_RC	9	9	15	6	16	6	15	11	9	12
AGCCCCGCGACATCAC	ref_565_RC	9	11	13	7	8	11	10	9	8	9
GGCTACCTCCTCTTTG	ref_565_RC	18	23	19	22	26	17	33	13	39	9
CTAGTCTTGCCCTCCT	ref_565_RC	6	3	14	5	6	8	7	7	19	9
CCATGACTTAAACACT	ref_565_RC	76	129	109	108	153	76	146	103	151	90
CTGTCTGCCCTATATA	ref_565_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTCACAATTTAC	ref_565_RC	3	4	4	4	3	2	5	3	5	1
TGCGTCGCCGTAGTTG	ref_565_RC	22	33	19	29	20	19	25	17	36	11
AAAGCTTAGTTATAAC	ref_565_RC	39	40	50	49	46	46	51	36	61	26
TGATAGCTGCATCTAA	ref_565_RC	6	5	2	5	8	3	6	5	3	2
TTCTTCAAGAAGCTTG	ref_565_RC	38	34	43	27	28	44	50	35	48	30
TAAATAAGCTGCCAGG	ref_565_RC	35	49	35	37	52	35	39	36	52	38
TCTCACGCCATGTCCC	ref_565_RC	17	20	24	16	17	16	21	12	16	19
CTTTGATTGCCCCTTC	ref_565_RC	28	25	38	31	34	32	32	32	37	26
TTGCGGTCTAAAACAA	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GCCATCTTAGGCTCCG	ref_565_RC	5	6	3	3	3	1	2	5	3	6
CAGATTTCCCCGTATG	ref_565_RC	2	13	6	6	17	3	10	7	9	5
GAGTCCTTCGCTCGAC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
CCGGACTTAGCGTGCA	ref_565_RC	0	20	1	1	24	1	18	2	15	1
TGGTTTTACTTCTAAA	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GCTTGTTACGGAACGC	ref_565_RC	2	7	4	7	4	1	7	3	4	3
GCCAGAGAGGGGTCGG	ref_565_RC	7	11	9	10	8	10	10	5	5	2
ACGTTCCGTTCAATGG	ref_565_RC	34	35	31	29	31	40	34	20	27	26
CTGCAACCTCAGCTAG	ref_565_RC	21	11	16	22	29	11	19	12	25	32
ATTGTCTGTGTTTGAG	ref_565_RC	28	43	48	24	40	42	53	32	43	36
TGCCGTCCGACCGTCT	ref_565_RC	31	79	47	32	84	27	94	32	94	34
AACACATGAATAGATG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
CGCTAGATGATGTATC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GTACGTACGTTTATAT	ref_565_RC	8	12	10	16	16	10	17	7	15	11
TAAGTTATGTGTGGAC	ref_565_RC	26	27	30	29	43	17	38	19	21	16
ATAAGTGAGGGGATTG	ref_565_RC	34	32	45	21	38	31	29	22	38	17
CTTTATGCCCTGTAAA	ref_565_RC	107	133	164	135	173	97	140	108	165	88
GGCCATTCGTTATACT	ref_565_RC	2	7	5	5	9	6	11	5	6	7
TCCGGGGATACCATTC	ref_565_RC	11	10	16	6	14	11	12	7	17	10
TTCCATTACGTAAGTC	ref_565_RC	75	62	65	70	43	63	59	43	77	48
CCATGCACACACTTAG	ref_565_RC	4	8	5	4	6	11	7	4	17	2
TTATACAATTCTTGGA	ref_565_RC	11	13	13	14	21	16	21	12	27	16
TATCTGCATAGGGACC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
CTGGCTGTACACAACA	ref_565_RC	30	27	36	34	36	29	33	27	39	20
TATGAACGTTTATGCC	ref_565_RC	40	42	26	44	57	47	59	28	50	23
ATATAAGATATATACA	ref_565_RC	34	68	66	51	61	53	68	46	64	51
TTATCCCCTGGCGAAA	ref_565_RC	0	0	0	0	0	0	0	0	0	0
AATACCGATGAACCGT	ref_565_RC	0	3	1	1	0	2	1	3	2	0
GTTCCGAGGCAGTTTT	ref_565_RC	0	0	0	0	0	0	0	0	0	0
ACGCGGTCTTTGAGTG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
AGGCGTGTTTTTCAGT	ref_565_RC	35	56	55	43	57	34	63	41	60	37
TAGCACGTCGGGTAAG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
CTAGCCTGTCTCAGCC	ref_565_RC	22	24	17	28	32	18	20	17	18	21
CCTTAGGATCTCGTAC	ref_565_RC	1	5	3	6	6	1	4	7	2	4
ATGATTAAGAATCTCT	ref_565_RC	0	0	0	0	0	0	0	0	0	0
ACCACTTACCTGGTAC	ref_565_RC	0	38	3	3	43	0	37	1	42	1
CCTTAAAGTAGTCTCT	ref_565_RC	38	46	51	38	53	36	61	36	37	35
TGGAGGTAGTCGCAGC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
AATATATGCAGCGGAG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GGGTATTAAATTGCAC	ref_565_RC	15	19	23	12	31	9	19	17	16	8
TATTGTTCCTGTGTCG	ref_565_RC	12	13	13	8	11	17	10	14	18	11
ATGAATAGCTGCTTCG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
ATGTATTTTCGAACTT	ref_565_RC	8	9	8	5	11	2	4	2	6	6
CACAACGAGGGCCCTC	ref_565_RC	10	16	10	6	13	8	9	11	9	8
GGCTGGCTTTCGAGGA	ref_565_RC	4	8	4	4	5	7	7	9	8	5
ACTTTTGGATCCCGAA	ref_565_RC	26	22	34	31	31	22	33	29	34	21
CTACGGCACACACTTG	ref_565_RC	23	35	46	28	35	19	35	33	37	32
TTTTGCCCACCGTTAA	ref_565_RC	27	33	49	31	38	30	57	17	28	29
CGGTACCTTGTTCTGC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GCATATGGTGTGACCT	ref_565_RC	4	7	8	8	2	5	4	6	2	1
TAATTTCTCTGTCGGT	ref_565_RC	30	22	41	25	28	25	25	18	23	27
TCAAGCGCATATGTTC	ref_565_RC	140	161	180	164	201	151	191	143	229	148
AGCCCAACTTTGATTG	ref_565_RC	7	8	13	7	12	5	8	4	7	8
TGATTGTTTGAACGTG	ref_565_RC	70	101	81	68	102	55	91	57	120	64
ATCGGGAACTTTCCCA	ref_565_RC	115	102	127	112	119	101	114	95	116	94
TTTACACATCCATCCA	ref_565_RC	23	18	24	11	21	22	19	17	18	21
GTCACGCAAGGGCTAG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
TATCATAGCCACATGG	ref_565_RC	3	9	5	8	8	8	9	2	8	9
TGGGAGGCGGCAGCCA	ref_565_RC	0	0	0	0	0	0	0	0	0	0
AAGCTGTAGCTGAATC	ref_565_RC	15	23	14	12	13	16	13	18	14	14
GGTCATGTCACCATTA	ref_565_RC	167	213	199	173	218	204	216	181	247	173
TTCGTACACTATATAC	ref_565_RC	22	26	18	21	18	20	38	16	28	17
CTAGGGATATTTTTAT	ref_565_RC	0	0	0	0	0	0	0	0	0	0
AACTCAGGTCTGATCA	ref_565_RC	5	7	14	10	9	10	19	7	13	9
GACGCTGAATAGGGTC	ref_565_RC	0	0	0	1	0	1	0	0	1	0
CTATTATCCGAGATCC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
TACCAAGAAATTTTCA	ref_565_RC	35	68	46	28	32	43	50	29	33	19
TAGGCGTTGAGCTCCA	ref_565_RC	21	14	21	23	19	9	9	10	20	10
ATTTTTGTTGTAGTTT	ref_565_RC	50	48	73	43	75	37	64	34	70	52
CCCCATGCGATCGCGG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GATAATGGGAACATCT	ref_565_RC	0	0	0	0	0	0	0	0	0	0
TTGGCCCCATCGCAAC	ref_565_RC	17	13	14	27	21	18	30	23	32	12
CCTTAGATTAAACACA	ref_565_RC	3	3	9	2	7	8	7	6	5	7
TTCGTCTACGCTGATG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GATAGTTGCCCCTGCT	ref_565_RC	5	5	3	3	4	2	15	3	6	2
CTGAGTAGAAATTTAG	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GTGGTTTTCAGGGAAA	ref_565_RC	29	29	29	28	29	40	32	32	22	24
TTTCCGGAGTCTTCGC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
TTGCGTGATTTTGTGA	ref_565_RC	7	13	6	8	7	7	7	5	14	5
CCCTGATATTAGCGTC	ref_565_RC	112	126	117	103	137	106	122	80	120	82
CCTTATGAGTGGGTAC	ref_565_RC	0	0	0	0	0	0	0	0	0	0
GGTTGTTGAATTGAGG	ref_565_RC	18	33	29	21	19	18	28	27	36	18
GGGAGTCTTCGCTATG	alt_5032_RC	68	78	86	66	73	72	81	54	91	55
TCAGTCAGCCTACGTT	alt_5032_RC	4	8	6	3	4	1	8	1	8	1
GTGCTACCACCTTCGG	alt_5032_RC	24	41	25	31	42	18	53	22	32	17
GTATCGAGTTATCGGT	alt_5032_RC	11	14	8	9	12	8	16	13	15	13
TCCAAAATCACTCTAA	alt_5032_RC	21	18	29	17	29	22	38	26	29	19
TTCTGGCTTTACGGAT	alt_5032_RC	31	43	43	32	63	31	51	27	60	29
CGAACCTACAACTTGT	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
ACAGACAGTCCGTACC	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
CCCTGGTTTCCATATG	alt_5032_RC	49	92	50	44	67	56	81	54	74	43
CTCGCTGATTATAGGA	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
GGCGTCCGGAGTATCA	alt_5032_RC	5	13	7	9	8	6	14	5	9	4
ACGACCAGCAGCATTA	alt_5032_RC	45	58	29	33	41	35	47	30	43	24
CAAATTTTGCGTACCA	alt_5032_RC	15	23	23	19	35	25	29	20	26	23
GCGGGTTATGAATACC	alt_5032_RC	10	26	9	8	12	5	15	9	17	8
ACTTCTACCAGCTGCC	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
TTCTGCCCGGGCTGCG	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
CTCTAAGTTATGCTTC	alt_5032_RC	97	110	101	85	134	104	112	52	131	80
CTGGGATTTGCAGTTA	alt_5032_RC	48	52	79	40	68	42	73	50	77	62
CCAGATAGGGGTACCC	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
CAATCGTTATATATAG	alt_5032_RC	81	84	85	75	111	67	104	64	107	62
TTCATTCACGTGGTTC	alt_5032_RC	27	32	24	33	23	21	31	14	40	16
TCGTTCTTCGGGTAAC	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
GCTTCGTGTAGTAATA	alt_5032_RC	64	101	70	77	136	51	130	47	109	50
TCGGCCGGTGAAACGT	alt_5032_RC	2	4	10	3	10	1	11	3	6	6
CAATTGTGGTCCATTC	alt_5032_RC	6	14	10	10	23	6	19	11	16	15
GTGTCAACCTTCTAGA	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
AGAAGAGATGACGTCA	alt_5032_RC	67	93	116	96	79	96	92	88	104	90
TGATGAAAATCCCCCT	alt_5032_RC	165	194	188	134	161	132	165	120	194	104
GGCCCACTACGAGTTC	alt_5032_RC	52	38	52	37	48	41	69	48	66	40
TCAAACGCTACCGATG	alt_5032_RC	4	16	14	6	8	7	18	4	13	8
TTATTTCCGCAATCAT	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
TCCCTTGCCAGTAACC	alt_5032_RC	33	89	36	43	111	25	95	21	106	26
TGCAACCTCTTTTAAT	alt_5032_RC	29	26	31	32	42	32	35	15	50	20
ACTCACTCGCTGACTG	alt_5032_RC	43	57	39	41	40	36	58	25	56	27
TTTTTCGCGGCGCGAA	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGACGCCGAACC	alt_5032_RC	13	22	12	13	22	11	35	9	23	9
TACGAGTCATTCTGAC	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
GTACACCCGCATCGCT	alt_5032_RC	0	3	0	0	2	1	2	2	7	0
ATATGAATACCCCGAC	alt_5032_RC	30	48	33	30	57	22	52	38	54	30
CGCTACCATATGTTAT	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
ACGTTTGACGCTTCAT	alt_5032_RC	10	27	16	14	20	11	23	7	40	16
GGGTTATATTTCGCTG	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
GGCAGGCTGTGTTTTT	alt_5032_RC	39	46	37	36	57	50	61	27	75	37
TCACGGCCGATTTCCC	alt_5032_RC	27	43	37	34	40	26	68	27	52	30
TTCACTATCAATAGAA	alt_5032_RC	7	31	8	8	14	8	17	7	21	6
TCCACATGCTATTTTT	alt_5032_RC	25	26	30	26	36	17	47	25	45	17
GAGGCGATAACGATCA	alt_5032_RC	3	8	5	8	4	0	5	7	16	5
CTACCTCATGATCGAG	alt_5032_RC	0	0	0	0	0	0	0	0	0	0
TCGTGTTCATTGAATG	alt_5032_RC	121	154	131	85	134	102	165	89	152	74
ATGCACGACACCGCCA	alt_5032_RC	45	46	50	36	48	37	46	20	44	32
CATAGAGGCCCTGCTG	ref_2754_reverse	31	51	45	33	59	29	68	46	62	38
GCCACCGAAAACCAAA	ref_2754_reverse	10	23	14	16	17	17	25	5	17	7
CGTGAGGAGGGTAGTA	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
CACTGATCTTCCCAGC	ref_2754_reverse	20	29	31	23	31	19	31	22	30	16
CGGCGACTTATCGGTG	ref_2754_reverse	13	37	16	16	37	7	43	7	50	8
TAGTGCCGCAGAGAAC	ref_2754_reverse	1	2	0	3	4	1	4	1	0	3
CGTCACAGCTGGCTTA	ref_2754_reverse	27	32	24	28	22	20	35	32	17	24
CGGGGCAGATCCTTGG	ref_2754_reverse	50	89	73	62	104	55	100	65	88	58
TTGGGTAAGTTAATCG	ref_2754_reverse	6	2	5	10	4	9	4	6	5	2
TCCATAACCTAAGTTG	ref_2754_reverse	7	14	13	7	7	7	16	5	5	7
TCAGGCCCGATTAGGT	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGTATCCATGCAT	ref_2754_reverse	48	95	60	54	112	47	93	53	120	44
CCTTATATAATCTCCA	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
AGGTAGGCGCACATCA	ref_2754_reverse	57	70	52	38	71	52	86	34	79	35
GTTACGCAGTGCGGTC	ref_2754_reverse	10	3	6	4	3	5	6	2	8	4
GTCTGCCAGCGTCCCA	ref_2754_reverse	40	79	67	60	79	49	84	31	87	41
TTACTTGAGCCGAGGG	ref_2754_reverse	15	50	28	27	43	27	51	31	47	24
TTCACCGCCGGCACGC	ref_2754_reverse	3	12	12	3	20	4	20	3	20	4
TTAGAGTAAGATTTCT	ref_2754_reverse	19	18	11	9	22	7	14	7	10	5
GGGGGCGTATGCCGTC	ref_2754_reverse	12	22	7	9	18	9	17	11	13	9
CTTGTCTTAATACCTT	ref_2754_reverse	24	133	38	32	162	16	162	18	152	32
CACGTCAACGGGCTGA	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATCTGTTGGTCT	ref_2754_reverse	5	6	1	3	11	9	9	7	9	2
GTAAGGGCGATTTGTA	ref_2754_reverse	21	44	42	20	34	27	43	12	34	17
GCTGAGATGCGAATAC	ref_2754_reverse	42	63	48	41	60	50	80	44	65	43
TTCTGTCGATAATTAC	ref_2754_reverse	39	58	41	36	63	35	52	36	59	28
TATTGCCCGCCAATTT	ref_2754_reverse	36	48	41	33	38	38	48	46	55	28
ATTACATCTTTGTTGC	ref_2754_reverse	10	16	8	17	7	2	5	3	13	4
GACGGTTTTGTTTAAG	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
GATAATATCTATAATC	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
GAGCGCTAATGGGTGC	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
ACCATACTGCATACGC	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
CGCATGCGTAATGCTT	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
TCACGCGGACATAGAA	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
TAATGATGCGTTCGCG	ref_2754_reverse	12	30	25	22	30	18	25	11	31	13
TTGCAGCTTTTTAGAT	ref_2754_reverse	64	89	45	51	106	48	85	46	103	54
TTCGGCTCTTCTTTCT	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
TTATCGAAACCGTCCT	ref_2754_reverse	17	40	23	17	29	15	33	19	33	18
CCCACACGTCAAGCCT	ref_2754_reverse	19	51	29	27	50	20	32	18	64	19
TTGAAATAATCTTTTT	ref_2754_reverse	102	126	117	116	141	110	164	98	163	101
TAATTAATTCAGCGTG	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGCGGATATTTTT	ref_2754_reverse	53	87	63	43	100	56	107	59	100	42
TTCTTTCATCGTAGGT	ref_2754_reverse	9	9	10	8	16	10	12	4	8	6
TTTCACTTAACTGATC	ref_2754_reverse	32	57	41	34	49	37	43	32	55	31
ACTGTAATGGCACGAC	ref_2754_reverse	13	17	11	9	15	16	13	9	28	10
GAACTCAATAATTGTT	ref_2754_reverse	34	50	30	29	46	22	43	26	53	18
ACCGGGCCTTAACTCT	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
GAAATGAAATTGTGAC	ref_2754_reverse	72	106	65	57	89	54	120	56	118	50
GCCCTGCACCCTGGGC	ref_2754_reverse	13	17	14	7	23	9	27	13	28	4
CACCTTCTACTAACTC	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
CATATCTAATATAAGT	ref_2754_reverse	9	19	12	16	28	14	19	10	22	7
AGTAAACTATGATCAG	ref_2754_reverse	16	21	10	12	8	9	18	10	22	5
GTTTGATACTTAAAGT	ref_2754_reverse	6	14	11	5	10	6	10	12	14	3
GCCTACATCATTGTTA	ref_2754_reverse	11	29	19	9	26	12	15	12	29	14
ATACCGGTCGATTTGA	ref_2754_reverse	46	107	44	28	99	54	81	41	93	28
GCGGCAAAATGAGGTT	ref_2754_reverse	1	3	2	0	0	1	1	0	0	1
CTCCAAGACCACATAC	ref_2754_reverse	89	161	112	114	184	86	170	76	210	66
GGCATTCGTAGAACTT	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
ACGACACGCTGCTTGG	ref_2754_reverse	17	18	25	25	26	14	29	14	25	20
CATCACTGTGTTCACG	ref_2754_reverse	23	36	26	20	32	28	37	23	41	23
AGGACCAATACTCCAG	ref_2754_reverse	17	24	20	16	23	19	32	8	43	19
CTTTGTCGCTGTACAC	ref_2754_reverse	1	2	0	0	5	2	0	4	1	0
GTGCCGCTTACAGCTT	ref_2754_reverse	18	42	14	11	30	11	25	12	25	17
CCTTCCATGTTCCCGT	ref_2754_reverse	0	0	0	0	0	0	0	0	0	0
GGTTATTTGCATTTAG	ref_2754_reverse	13	8	12	6	16	11	7	5	8	9
ATAGTGTTAGTTTGAA	ref_5686_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTATTGTACAT	ref_5686_new	24	31	27	33	30	29	36	24	33	30
CGCCGCGGATTCGCCG	ref_5686_new	139	260	188	158	236	156	262	162	260	161
GTATGCCCGATCGTAC	ref_5686_new	31	65	55	45	52	43	55	41	60	31
GCGTAAAAGGTTTGTG	ref_5686_new	50	71	62	63	58	52	103	32	92	54
CATTCAATAGCGTGTG	ref_5686_new	14	32	17	18	26	16	28	11	25	11
CACAGCACTTCCTTCA	ref_5686_new	43	74	53	42	66	46	83	31	96	30
AGGCGTTAAATAGCGG	ref_5686_new	8	0	5	6	4	3	5	1	4	5
CTTGGTTTACAGGAGC	ref_5686_new	16	18	21	13	13	9	24	13	11	10
TCGCACTTCTTTTTTG	ref_5686_new	0	0	0	0	0	0	0	0	0	0
ATTGTCCGATTTCAAG	ref_5686_new	43	61	63	48	75	48	57	47	66	50
TCCAATGTTTGAACCC	ref_5686_new	42	45	46	36	53	34	36	25	45	35
TCAATATTTAACTTGA	ref_5686_new	42	59	50	27	67	39	56	36	74	25
CAATCTCGAATAGCGA	ref_5686_new	36	30	27	22	26	22	27	29	38	28
TCCGGCACTCTCGTTC	ref_5686_new	20	24	16	9	27	16	35	13	20	17
AAGTGCTCGTTTGGAG	ref_5686_new	0	0	0	0	0	0	0	0	0	0
GGGTACCGCATATTTT	ref_5686_new	0	0	0	0	0	0	0	0	0	0
ATTTTTACGCATACGA	ref_5686_new	20	25	15	17	28	12	26	14	18	15
ATAACTTCATCCGGGC	ref_5686_new	50	53	72	57	61	63	54	64	55	47
TACGCTGGTTATAGGG	ref_5686_new	7	8	4	8	7	2	4	3	13	5
TTTGTGTTCTATAGAT	ref_5686_new	136	201	172	129	227	124	238	155	241	137
GCAAGCAGTGGATTCC	ref_5686_new	0	0	0	0	0	0	0	0	0	0
CAACTTCCGTTCGGAC	ref_5686_new	6	11	13	17	10	8	9	14	18	3
TAATAGACTCGGGCCG	ref_5686_new	27	36	39	40	46	25	29	33	51	24
GTTAGGACAGCACTTT	ref_5686_new	11	12	8	13	6	7	17	10	16	6
TTTAGCATGTGCCTAC	ref_5686_new	0	0	0	0	0	0	0	0	0	0
CCGCGTGCGGGCGGTA	ref_5686_new	25	46	38	28	56	23	37	32	43	28
GCAGCGAAATATGTTC	ref_5686_new	0	0	0	0	0	0	0	0	0	0
ACTAGTTGCATTGATC	ref_5686_new	0	0	0	0	0	0	0	0	0	0
GGACACGGCCTCGGCA	ref_5686_new	22	35	25	32	31	19	29	23	26	17
CCAGGCGTGCGCTTAA	ref_5686_new	20	23	14	13	31	20	29	22	25	23
CTTACTTATACCGGCC	ref_5686_new	102	153	122	103	172	99	167	79	148	94
TACACTGTTTGTACGG	ref_5686_new	28	57	36	42	61	23	77	28	63	38
TGTCGGATGAAGAGCA	ref_5686_new	56	71	61	57	75	42	65	57	68	47
ACTTTCATTCATTATT	ref_5686_new	96	152	127	87	141	89	177	85	174	92
GGGCACGTGCGATCTT	ref_5686_new	84	76	87	62	89	69	74	73	85	50
TAGGGATTCTACGTAT	alt_3356_RC	262	72	323	238	91	208	97	249	99	192
GGGGCTAGACTAGAGC	alt_3356_RC	71	24	82	53	19	64	26	70	24	52
ACAGACCTATTCAAAC	alt_3356_RC	221	104	300	273	106	234	113	235	110	251
AGCGCGGCGTCGTCGG	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
TGGAAACTAGCGTAAA	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
CTAGTTCGATGATCTG	alt_3356_RC	316	120	334	286	104	302	137	254	140	253
TTCGCCACCACTATAT	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
ACTGTTTGAAGGTAAA	alt_3356_RC	164	76	218	166	75	158	74	149	70	157
TTTTCTTCGCATTGTT	alt_3356_RC	46	19	59	52	15	39	23	31	25	26
TTATAGGTCACTGATA	alt_3356_RC	466	154	628	529	175	508	211	510	212	464
ACCGTTACGCGGTGGT	alt_3356_RC	120	57	168	127	41	133	66	105	58	106
TACGTAATATCATTCG	alt_3356_RC	182	61	262	208	74	214	65	205	82	168
GTGCATCCTCCGCGTT	alt_3356_RC	241	129	392	293	132	293	117	300	135	261
TCCCTTTCTCCGCTAG	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
CAAGGAATCAAACCGG	alt_3356_RC	93	27	116	109	32	95	42	102	38	117
TTTAGTCACGTAACTT	alt_3356_RC	9	3	4	3	2	12	7	5	4	10
CTGACGATGACATCGC	alt_3356_RC	73	31	87	70	36	70	34	55	27	82
TATCCACGTTAAGTGA	alt_3356_RC	21	8	18	17	15	21	14	16	9	23
GAGCATTGCCTGGCCG	alt_3356_RC	274	75	316	272	122	284	108	257	105	265
ATTATCACATAGTAAG	alt_3356_RC	260	102	358	260	115	197	87	259	98	243
ATGCTTGCCCAAGTCG	alt_3356_RC	17	5	17	28	5	11	8	14	4	19
AACCGTTTTTAGGCAG	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
GTAAGATATTTGGTGT	alt_3356_RC	214	75	274	223	78	201	85	203	92	191
AACTTTTCTCTGAATT	alt_3356_RC	403	107	462	463	110	402	117	381	138	408
CCAATCTTAAGCTTCT	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
CCCCCATGCCTGCCGA	alt_3356_RC	437	136	532	443	152	456	146	418	158	410
ACGGTGTCTATAAATG	alt_3356_RC	30	15	47	55	9	34	25	44	13	42
TTCGATGGCCCCTGAA	alt_3356_RC	49	24	80	52	18	49	24	57	16	50
GTGTCCCGTATCTGTA	alt_3356_RC	131	30	162	154	47	144	44	85	59	106
TTCGATTTTTATGGCC	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
GACTTCTGCTACTTCC	alt_3356_RC	251	101	378	287	111	287	142	261	122	263
TTATTGCGTTTTTGTC	alt_3356_RC	474	161	539	528	167	440	197	442	184	451
AACTGTTGGTGCCCTC	alt_3356_RC	183	56	194	146	67	164	61	169	66	162
AGTAATTGGTCGTCCT	alt_3356_RC	0	0	0	0	0	0	0	0	0	0
AAGGGTATGAATTCTG	alt_3356_RC	155	57	214	155	68	175	45	156	57	126
GTTCGCGCTTCTGATG	alt_3356_RC	119	58	140	138	45	117	30	89	26	103
GATGCTTGTTCTCGGT	alt_3356_RC	535	204	633	572	169	523	173	536	168	457
CCCGTCCTGCTCATCC	alt_3356_RC	9	3	3	1	3	8	0	8	2	5
GGTGACGAGCAGGGGA	alt_5776_new	0	0	0	0	0	0	0	0	0	0
TCCTTTTGTAGTTACA	alt_5776_new	21	35	22	23	25	21	39	16	34	11
TTCTTTCGTATTCTTT	alt_5776_new	0	0	0	0	0	0	0	0	0	0
CCGTGGTCTTAACGGG	alt_5776_new	2	10	4	4	6	3	6	6	4	3
AGGGGGACTTTCTCGC	alt_5776_new	26	43	31	24	30	19	34	17	28	23
GTTGTGGATGGGGCTA	alt_5776_new	0	0	0	0	0	0	0	0	0	0
TTTATGTATCCTCCTC	alt_5776_new	4	29	3	1	11	4	30	8	24	3
CAGACGTATGCTCCTT	alt_5776_new	62	64	63	55	54	51	53	43	87	44
ATTTTAAAGATGAATT	alt_5776_new	23	37	28	33	37	20	45	23	32	18
GGCCGCGAAGTACCGT	alt_5776_new	14	30	29	18	18	16	43	17	39	18
TTTACATTACCATTTC	alt_5776_new	0	0	0	0	0	0	0	0	0	0
TTTTAAATTCCCGCGG	alt_5776_new	6	9	11	5	9	8	8	2	10	10
AGGGTCCCGCAGTTTT	alt_5776_new	41	60	54	48	58	42	68	36	51	33
TCATAAGTTGTCCCGG	alt_5776_new	20	54	26	23	55	21	44	19	58	21
ACACGCATGGCTGACC	alt_5776_new	7	6	4	2	8	2	6	2	6	2
GGCTATCGCCGAGCGA	alt_5776_new	99	153	168	122	159	118	153	125	180	135
TCCTTTGCTCGGAATG	alt_5776_new	3	5	2	3	4	4	1	4	4	3
CGCCCAACCTGTCGCC	alt_5776_new	64	166	78	100	164	79	161	70	179	60
TATGTTCACCGTATGT	alt_5776_new	0	0	0	0	0	0	0	0	0	0
GACTCCGATCCAATCT	alt_5776_new	2	9	2	2	4	1	7	3	5	1
ATATATGCGCGTGCCG	alt_5776_new	15	42	35	30	52	31	33	21	55	27
ACAGTTTTCGATCATT	alt_5776_new	0	0	0	0	0	0	0	0	0	0
CCCCGGGATACTATCC	alt_5776_new	24	57	49	38	75	41	64	22	68	30
AGCCATCGGAAGCGCT	alt_5776_new	0	0	0	0	0	0	0	0	0	0
CGTTCACCGTTTTTTG	alt_5776_new	12	19	12	9	12	14	18	11	28	10
TTCAACCCTCCCAAAC	alt_5776_new	47	60	54	43	58	41	55	34	66	32
CCATGTAATTTATCTA	alt_5776_new	0	0	0	0	0	0	0	0	0	0
TGGTTGCCCATAAAAT	alt_5776_new	24	40	35	37	48	21	42	26	47	27
TTTGCTCGGTGGCATG	alt_5776_new	22	38	37	13	33	17	26	17	35	28
TATTACGTAAGTCTTG	alt_5776_new	16	14	20	17	22	14	19	10	17	8
AGTTTGACATCAAGTG	alt_5776_new	7	14	12	9	14	9	11	12	16	4
GTGTGATAAAAGGGCG	alt_5776_new	34	42	37	42	48	33	79	36	70	32
AGCCGCTTATTGCTCG	alt_5776_new	2	2	1	4	2	1	6	0	3	3
GGACTCCGACATATTT	alt_5776_new	7	5	6	7	7	7	7	5	10	5
AACTGATGGCTCATTC	alt_5776_new	5	9	4	9	6	8	12	3	11	4
AGATGCGCTAGTTCCT	alt_5776_new	0	0	0	0	0	0	0	0	0	0
CGGTTTCACTCCATTC	alt_5776_new	2	15	6	4	13	5	14	7	20	9
TCATTGGACAAGATCT	alt_5776_new	3	14	9	8	19	6	6	6	4	8
ACGTACTGTCTCTTGC	alt_5776_new	24	35	30	24	26	19	40	23	46	23
TATGGGTTTGGATCAT	alt_5776_new	7	9	10	6	11	3	19	9	15	3
TCAATAGCGTGTGGCT	alt_5776_new	12	21	17	19	27	8	37	12	31	13
CATTGCTCGTTAGGGT	alt_5776_new	49	47	24	30	61	27	55	26	62	20
CTTATTGATCGCCCAT	alt_5776_new	0	0	0	0	0	0	0	0	0	0
CGCCCAACCTGTAGCC	alt_5776_new	0	0	0	0	0	0	0	0	0	0
TCAGTTTATATAGTCA	alt_5776_new	27	37	43	18	42	25	52	21	43	21
CCCCCCACTCTGCCTT	alt_5776_new	32	59	26	27	54	22	48	27	47	26
TCACTATCCGTTCGTA	alt_5776_new	3	10	2	5	6	9	8	7	5	5
ACCGTTGGCGAATTAG	alt_5776_new	0	0	0	0	0	0	0	0	0	0
CTGCAGTGCCCTCTTC	alt_5776_new	0	0	0	0	0	0	0	0	0	0
GGGTCGTTCTTACATT	alt_5776_new	5	8	10	4	7	1	8	4	7	3
CTCAGTTCACTCTTCT	alt_5776_new	0	0	0	0	0	0	0	0	0	0
CAGATTTGGGCTAATT	alt_5776_new	42	66	32	28	66	29	65	42	82	27
GTATTTTTTGTTAGCG	alt_5776_new	80	120	88	66	125	87	150	64	155	71
TAGGCTATACACGTTC	alt_5776_new	13	25	17	14	25	16	29	9	32	12
AATAGCTCCGTTCAGG	alt_5776_new	13	21	22	16	16	15	15	9	19	6
GTTCAGGCTCTGGCTC	alt_5776_new	2	10	2	8	7	3	7	3	4	3
TGATCACTTTTCTGCG	alt_5776_new	6	8	7	2	9	4	4	4	8	2
GAAAGCTCCCTCGCAC	alt_5776_new	21	26	23	26	19	33	20	13	23	16
AGGCGTGTAGCGGGTC	alt_5776_new	28	48	49	31	53	25	61	33	57	29
GGGACGAGAAACTCCT	alt_5776_new	45	31	36	16	27	34	31	24	34	25
TTGTTCTGCCAGGCCG	alt_5776_new	46	61	73	28	73	52	71	49	77	48
ATGTTGTCATTAATAA	alt_5776_new	35	54	32	44	41	31	51	32	63	26
CCATGATCCATTTCGT	alt_5776_new	5	9	5	4	14	4	8	7	7	4
CGCTGGTCTTGGGGCG	alt_5776_new	21	29	15	17	27	27	31	15	26	14
TTCACTGGTGAGATAG	alt_5776_new	11	13	9	13	22	16	24	17	24	15
TGCGGTCTCCTTATTT	alt_5776_new	43	121	41	30	131	39	131	32	119	31
TGCTTTGAATGTGGTA	alt_5776_new	0	0	0	0	0	0	0	0	0	0
AACGATCGTTGGACGT	alt_5776_new	8	11	9	5	7	5	3	4	16	5
CAATCCGTAAGGGTCA	alt_5776_new	16	17	12	7	19	15	26	8	18	7
TTGCTGCCGCAATATA	alt_5776_new	12	24	30	22	22	24	30	19	30	20
TCTGAATGAGCATTTC	alt_5776_new	32	52	26	41	48	36	50	28	49	28
TGATATCGCGGAATGC	alt_5776_new	12	13	14	9	10	7	23	6	24	11
AATTACTTTACTGCGG	alt_5776_new	22	26	30	30	46	23	48	17	38	32
CCCCTCGCGAAAGCAA	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CGCATCATGGATGTCT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TACGATCGTATTTTAA	ref_4925_upstream	92	140	137	111	137	101	146	103	154	85
ACTGCGTCGCTATTTA	ref_4925_upstream	79	96	85	70	112	76	87	61	116	64
CGGTTCAGCCGGCACA	ref_4925_upstream	40	45	42	27	54	26	40	20	56	37
TACTCATTTGAGATAC	ref_4925_upstream	4	2	4	6	10	7	2	1	7	5
GGCGCATGCCTATTAC	ref_4925_upstream	5	3	5	4	5	6	10	5	9	2
AGGCCACGCTCTACGG	ref_4925_upstream	16	20	21	23	20	16	24	15	31	14
GAGCCCTCACTGTTCT	ref_4925_upstream	17	43	33	29	62	26	51	41	55	28
CCTCCTATTGATCGGC	ref_4925_upstream	44	69	62	44	57	32	71	49	79	42
AATAGTGGTTGCGGCC	ref_4925_upstream	3	8	3	0	8	1	8	0	3	3
CGACCTCGGTAGCCCC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CTCCATCTCGAATGTA	ref_4925_upstream	3	5	2	4	16	7	12	3	14	2
TCGAGTCCTCATGTCG	ref_4925_upstream	11	32	24	20	20	18	19	10	27	13
TTCCGAGCGGGAAATT	ref_4925_upstream	48	100	90	47	77	85	80	49	114	49
ATAATGGTCTTTCCCT	ref_4925_upstream	12	20	11	13	19	5	17	9	11	9
AGTATCTAAAAGTTTC	ref_4925_upstream	17	21	27	11	18	9	18	10	26	10
CCACTCAACGACTTCG	ref_4925_upstream	75	152	99	91	168	82	200	85	174	63
ATTTCGATCACTTTGT	ref_4925_upstream	1	0	2	2	2	0	4	0	1	1
TATTAATATGCGAAAA	ref_4925_upstream	15	33	29	9	18	11	27	11	26	8
GCTCGACATAGCGCGG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTCCGTTTTTAT	ref_4925_upstream	36	42	45	35	40	40	32	30	31	31
CGTTCATGGTTATGTC	ref_4925_upstream	53	66	54	46	72	45	91	36	84	75
ATTATGTGTATGGTAG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTCGCCTTACTTC	ref_4925_upstream	7	5	8	7	20	2	4	8	15	2
AACGGTAATTGTTTGT	ref_4925_upstream	0	2	2	1	2	1	2	0	1	0
ATGTTCCGGTCGTTTT	ref_4925_upstream	13	35	27	15	25	13	28	17	29	24
TAGTAATGTGTAATTA	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCTGCGGCTGGTG	ref_4925_upstream	30	48	27	34	58	28	70	28	74	25
GTACTATTCGCAGGCT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCGGTTTATCTGA	ref_4925_upstream	26	32	33	27	25	15	32	16	31	25
TTCGCGGTACAGAAAC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
GACGATCTTTTGTCAT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TCCATGTATTGGTTGG	ref_4925_upstream	38	53	55	51	54	46	45	38	61	41
TTAGCGTTATTCCATT	ref_4925_upstream	5	14	13	7	12	11	18	5	14	11
AGTATTACGGGGTTCC	ref_4925_upstream	45	52	52	51	69	30	59	28	69	35
ACGAGACAGCTCTATT	ref_4925_upstream	47	35	39	34	47	27	46	52	46	35
TGCTATAGTGATCGGC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGTGGCGCCAGG	ref_4925_upstream	132	134	149	111	143	135	148	123	169	131
CTCCGGCTCTTTCGAT	ref_4925_upstream	35	65	35	33	50	26	60	44	47	33
TAGCTGGCGGTAAGTC	ref_4925_upstream	68	77	71	67	67	77	73	59	84	59
GGCAATTATCACTGCC	ref_4925_upstream	19	22	12	31	32	24	25	15	36	16
TTATCATCGATTTGTA	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TGGCCATGACATAATT	ref_4925_upstream	26	53	50	34	55	46	39	36	58	46
TAAGGTCCGGTCCCCC	ref_4925_upstream	37	31	28	29	40	25	37	24	45	17
GTTCATATACTGTCGT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCTTTAAACGTAA	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CTACGAGCATGCCGAC	ref_4925_upstream	6	11	6	12	12	7	22	7	15	7
AATTATAGGATTGCTC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
ATAACAACAGCAGAAA	ref_4925_upstream	31	40	36	29	57	31	46	31	50	25
CCGTGTGGAAAACAGA	ref_4925_upstream	43	51	52	43	61	33	63	41	82	45
GCACTTATATTAGGGG	ref_4925_upstream	13	20	8	9	15	12	17	14	18	9
CGGTGCATGTATGTGT	ref_4925_upstream	6	21	13	12	22	11	29	13	30	9
GTTATTTACAATGGGC	ref_4925_upstream	7	8	9	3	9	4	6	2	9	9
ACCGATCCCTAACTGG	ref_4925_upstream	6	57	10	12	63	3	57	7	55	9
GGACTTTGGCGCCCAG	ref_4925_upstream	34	43	47	27	47	29	49	41	61	31
AAGTATTCACCGTGAC	ref_4925_upstream	30	33	41	24	24	27	33	15	56	22
TGCTATCCACGGTTGG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
GGGGGCGCCCAGATCA	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TTGCCAAGAAGCTATA	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TACGCATTCTTTTAGG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGAGACGTCGAAC	ref_4925_upstream	6	4	1	2	3	6	6	5	5	2
ATTAGAAGGCAGCCGC	ref_4925_upstream	28	28	14	22	18	12	35	20	25	21
ATGCATCTTGGGGATA	ref_4925_upstream	75	84	85	98	101	65	118	58	114	74
CCTTCGCCGACCTGTT	ref_4925_upstream	16	22	13	19	33	7	27	9	45	13
CGATGTTACGACCTGC	ref_4925_upstream	11	15	8	9	13	11	15	9	11	11
GGTAAGCGGCCCCGGG	ref_4925_upstream	6	8	8	7	18	5	8	5	8	7
TTTTTATCCTTTGTCG	ref_4925_upstream	2	7	5	2	10	4	6	3	4	1
GTTGCAAGCCTGTGTT	ref_4925_upstream	2	2	1	8	1	2	2	0	2	3
TTCAGAAACCAAGAGG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TAGAATTTCTTAGTCA	ref_4925_upstream	42	47	46	34	59	34	58	40	68	37
CGGGTTCCGGATTTCT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCCAGGTAACACC	ref_4925_upstream	6	14	7	10	10	9	9	1	3	3
GGCGGCAGAGATTACA	ref_4925_upstream	21	18	15	12	13	14	18	16	18	14
TTTGACCGTGCTGTGC	ref_4925_upstream	6	16	10	6	16	8	19	8	13	6
TTATCTCACTGTTCTG	ref_4925_upstream	16	9	7	8	17	2	16	10	11	10
TACCGTACTGTTTCCT	ref_4925_upstream	19	22	15	17	25	10	24	5	18	7
GGTTTGCTGGCTTGCA	ref_4925_upstream	2	5	4	5	6	3	5	3	5	2
CTACACTTTTGCCGCC	ref_4925_upstream	16	25	14	6	25	12	24	10	26	11
CGGTTGAAACTGAAGA	ref_4925_upstream	57	50	41	31	60	48	54	38	59	45
TATTTTTTACGACATG	ref_4925_upstream	3	7	7	5	16	4	10	10	3	5
GACCTCTAATTCAACT	ref_4925_upstream	32	48	45	47	41	39	64	26	51	27
TAGAGCATTACAAGGC	ref_4925_upstream	74	124	111	114	114	76	135	58	123	78
TCAAAAAACGCATCGT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
GATATATCTGTATTTG	ref_4925_upstream	2	10	8	5	13	4	10	2	3	6
ATGTGGTTTTCTTTAG	ref_4925_upstream	48	52	61	55	68	57	73	57	63	41
TGCACATCTCTAGTTG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACGTTCCGACTG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCTCACCTGTTGCAGC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
ACATTGCATATCGGGA	ref_4925_upstream	8	3	4	2	5	3	5	3	3	4
CTCTGGTATCGCGACT	ref_4925_upstream	37	68	31	27	64	36	58	31	55	19
GTTTAACTAAGAGAAG	ref_4925_upstream	23	36	27	18	27	23	39	14	44	14
TCCGAACTATTTGTTA	ref_4925_upstream	77	150	80	59	107	91	100	80	134	64
GGTCAGGGCCTACGTT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
GTCTAATTCGGCCTAG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCGTATTTATATC	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTCTCGTTACTAC	ref_4925_upstream	11	18	15	9	13	11	20	9	15	9
ATACGTTTGCAGGGGT	ref_4925_upstream	11	21	15	15	13	12	26	17	25	15
TATTATAGGCTGTTGG	ref_4925_upstream	70	132	63	93	124	70	101	62	112	51
GGTCTTCTGTGTATTA	ref_4925_upstream	12	22	17	13	35	12	35	15	30	14
CGCTCGTCTCCCACCT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGCTCCTCGTCAC	ref_4925_upstream	11	4	3	3	15	6	22	4	11	3
CCCGGCCTATGTAATG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTGTGAAGACAAG	ref_4925_upstream	9	15	11	10	21	8	12	7	16	11
TAGCGACTGTGGAACC	ref_4925_upstream	2	4	5	3	11	0	8	3	8	3
GCGCCTATAACGCTGT	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
TGATTCGAGTGTGGTC	ref_4925_upstream	20	25	19	16	27	20	25	17	34	18
CACGCATTAACTCTCG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CAGCCTTTCGGCTACG	ref_4925_upstream	0	0	0	0	0	0	0	0	0	0
CGCGAGATCTCTCTAC	ref_5911_new	0	0	0	0	0	0	0	0	0	0
GTATATAATCTGGTAA	ref_5911_new	4	9	6	3	14	7	11	9	17	7
TCACGTCCATAACTCA	ref_5911_new	4	10	10	11	3	9	12	4	9	6
GACCGATTGCTGCTAC	ref_5911_new	0	0	0	0	0	0	0	0	0	0
ATCTGTGCTTACTGAG	ref_5911_new	35	69	50	36	72	55	84	40	88	33
TTCTCTCCAGCCATCG	ref_5911_new	0	0	0	0	0	0	0	0	0	0
TCCTGTGCGGAAGTTG	ref_5911_new	1	2	1	0	2	0	0	1	3	1
GTAATACACTCGTATG	ref_5911_new	14	22	10	12	20	11	13	15	13	6
GATCCTATTACAATCC	ref_5911_new	9	12	15	13	19	14	14	15	25	12
CCCGCGGGCAAGCATT	ref_5911_new	0	0	0	0	0	0	0	0	0	0
TGGTAGGACAGTACCC	ref_5911_new	24	35	35	21	51	21	28	25	32	27
TATCAACACTGCTGTG	ref_5911_new	0	0	0	0	0	0	0	0	0	0
CTGTTTATCACCGGAA	ref_5911_new	17	45	58	29	57	28	45	16	45	33
GAATGCTTGTGGTGAT	ref_5911_new	0	0	0	0	0	0	0	0	0	0
GAGCCCGTCCGTTTCT	ref_5911_new	8	5	6	7	11	7	5	7	9	6
TGAACTATCATGATAT	ref_5911_new	1	1	2	4	3	3	4	1	6	1
AGGGACGTTACTAGCG	ref_5911_new	28	36	30	20	48	22	40	15	33	32
TGGGCTAGTCGTGTAT	ref_5911_new	3	9	5	6	5	3	5	3	14	4
AGTATCGGTGGTTTGG	ref_5911_new	64	95	68	50	103	69	103	56	84	45
CTTCGACCCTGTATAA	ref_5911_new	0	0	0	0	0	0	0	0	0	0
CGGTGTTCAACCATCG	ref_5911_new	0	1	2	0	1	1	1	0	0	1
AGCCCCCTCCCTCCTT	ref_5911_new	136	195	167	133	181	122	179	118	200	117
CATTTCTTAGTTTTAT	ref_5911_new	28	22	37	18	41	32	38	21	46	24
TCTTTATTTACCAAAT	ref_5911_new	0	0	0	0	0	0	0	0	0	0
GGATCCAGTTTCTGTA	ref_5911_new	32	48	33	22	38	20	33	26	49	24
AGGGAATATAGAGCCA	ref_5911_new	0	0	0	0	0	0	0	0	0	0
GTTGTAGCCCCACATA	ref_5911_new	11	39	21	15	26	16	46	22	35	12
TAGGTGCTTGTCCTAA	ref_5911_new	23	43	19	13	38	18	30	20	34	10
CCCGTTTCTGCTCCTC	ref_5911_new	275	321	313	211	320	252	330	253	337	213
TGGCATCCACCCGTCT	ref_5911_new	20	32	19	20	30	15	30	20	25	17
GCCACAGTAACATGTT	ref_5911_new	7	24	12	11	20	14	30	9	23	8
CGGGTATAGGGGTACT	ref_5911_new	0	0	0	0	0	0	0	0	0	0
ATATGTGCTTACTGAG	ref_5911_new	0	0	0	0	0	0	0	0	0	0
TAATCCTTGTTGTCGC	ref_5911_new	0	0	0	0	0	0	1	0	0	0
GTCCATCCCAAGTGCG	ref_5911_new	0	0	0	0	0	0	0	0	0	0
CCCCCGTCTGTGGTCA	ref_5911_new	1	9	0	1	11	3	15	0	13	1
GTCCATACCGATGCAT	ref_5911_new	7	39	17	14	23	21	20	15	27	17
CAGACATGAACATATG	ref_5911_new	33	43	45	21	46	35	55	26	72	27
AACTCTTACAGGATAC	ref_5911_new	8	11	1	2	7	6	5	2	2	1
ATAGGACGCGATTGCC	ref_5911_new	0	0	0	0	0	0	0	0	0	0
GGGCTTACCACAGGCT	ref_5911_new	145	261	206	124	299	121	308	140	309	125
TTCAGGGAGCAGGTTA	ref_5911_new	0	0	0	0	0	0	0	0	0	0
TAAGTATCCAAGTTCA	ref_5911_new	63	92	59	62	100	68	103	68	97	35
GCCATCACGTTTTGAT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
TTTGGGCATGCACTGC	alt_2283_RC	53	55	63	44	63	36	81	48	80	33
GAAAATATCAGTCCCC	alt_2283_RC	13	21	24	27	22	20	22	22	33	16
CCATTTACGTTTAGAC	alt_2283_RC	25	29	23	17	26	16	27	16	24	13
GCAGCTCGCGGTTGGC	alt_2283_RC	85	112	102	72	129	83	152	71	133	69
CGTTAGACCTCCTATG	alt_2283_RC	76	97	82	63	67	56	72	62	92	59
ATCATGCGAAATATGT	alt_2283_RC	30	33	29	8	32	27	28	28	27	24
TGCGCGCGCAAACCCT	alt_2283_RC	97	131	131	95	121	97	130	92	137	77
TCTTGCTTTTCGCTTG	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
ACATAGTGTTTTATGA	alt_2283_RC	36	50	46	35	35	36	41	29	46	35
GTGGCCACTGGTCAAC	alt_2283_RC	2	5	5	4	2	3	5	7	6	3
CTACTTTGGTATAGTT	alt_2283_RC	35	42	41	32	44	34	51	23	50	32
GCCAGCGCGACCCTGG	alt_2283_RC	8	10	10	11	10	20	22	9	15	14
TCGACCGGCCTATCTT	alt_2283_RC	20	13	16	21	33	23	21	21	33	14
ATGTGTATGACCCCCT	alt_2283_RC	56	74	64	56	67	49	97	49	82	65
AACCTTGGCGGGCCTC	alt_2283_RC	0	0	2	1	0	0	0	0	0	0
CGTTAAAGGTCGCCTG	alt_2283_RC	45	47	39	16	39	35	62	21	41	29
GTGGTCTTGCTTAGCA	alt_2283_RC	33	32	34	34	37	36	40	30	43	25
CTAGTGTAGATTCCTT	alt_2283_RC	4	4	10	6	5	5	7	3	4	3
TATCATTGCTCCCGTG	alt_2283_RC	7	3	16	5	13	7	11	9	5	5
CTGGACCGTAGCACGG	alt_2283_RC	72	92	102	60	99	75	106	75	99	69
GACGTGCTCGGTTTAT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
CTAGCCCTCAGCGCGG	alt_2283_RC	68	83	84	77	98	48	99	51	117	55
GCACCGTTTATCGGGC	alt_2283_RC	37	38	36	29	47	25	49	32	51	28
ATTCTCGCCGAAACGT	alt_2283_RC	42	53	57	37	54	46	55	51	52	19
GTCCATCATCATAGGT	alt_2283_RC	23	35	34	37	32	40	25	26	36	20
ATGTGCAGTGGCCTGG	alt_2283_RC	13	20	12	21	14	8	10	12	8	3
CCGCCTGTTTTCCAAC	alt_2283_RC	16	23	29	24	30	23	19	22	22	22
TCCAGATGCTCTATTT	alt_2283_RC	150	186	171	134	201	141	205	111	197	126
AAGCCCTTTTTTCTTT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
CTCCTTCTTGACCAGC	alt_2283_RC	19	19	18	13	13	9	24	11	13	13
TTAGACTCGGTTGATT	alt_2283_RC	91	124	90	69	83	62	112	83	134	88
ATTTATATGCAGATAT	alt_2283_RC	18	36	30	24	34	29	33	24	38	18
TGCTTAGAGGTTCTTT	alt_2283_RC	12	17	15	7	17	12	16	7	14	13
GGCTCATCCCAATAAG	alt_2283_RC	182	243	213	175	276	152	284	175	270	163
TTCCTCACTTTTGCTC	alt_2283_RC	14	11	19	14	13	10	12	15	20	10
TTCGTTTTCCGTAGGG	alt_2283_RC	15	28	17	12	27	16	20	13	11	13
TAGTTTTGGCTGTTTC	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
GCCCTTCTAAAATAGT	alt_2283_RC	23	28	27	14	24	15	27	11	27	15
CTTTTCATATGCCTTT	alt_2283_RC	26	34	27	30	43	29	36	23	32	20
TTTTGGGAAACTCCGG	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
ATCGTAGTTACTGTAA	alt_2283_RC	31	49	28	17	47	22	26	25	53	26
TACTGCCATTCACTCC	alt_2283_RC	171	218	200	144	217	162	264	160	247	167
ATTTTAACTACTTGGT	alt_2283_RC	76	116	92	78	109	80	106	96	142	87
TCCATCTACTGAATGT	alt_2283_RC	0	2	5	3	7	5	3	5	6	1
AATTTGGTGCCTAATG	alt_2283_RC	30	56	59	28	52	28	52	28	56	33
CGTTATTCTACCCTAT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
TACTAGAACTTGTCAA	alt_2283_RC	9	6	11	11	27	7	20	15	15	11
TCACTTTTTCGGCTAG	alt_2283_RC	19	18	33	19	26	20	25	21	20	18
GAGGGTACACCCTGTT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
ATTCCGGGCGTTTTCC	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
GTACTTCCCTTGTCAG	alt_2283_RC	10	20	6	6	26	7	33	7	25	6
ACATGCCATATATTAG	alt_2283_RC	5	5	10	5	9	7	13	9	11	7
TTCTGCAAGCTACCTT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
GTGCTCAATATGGGTA	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
GCATGGATTGAGTCGA	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
GCCTCCACAGTCTCTA	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
AACACATCCGCGTTCT	alt_2283_RC	24	20	21	23	18	25	40	11	27	23
AATTTGACGGATCCAC	alt_2283_RC	69	27	79	58	29	55	36	40	25	48
GGGTATGGGACCGTAT	alt_2283_RC	117	126	116	109	110	84	112	97	113	106
ATAATCCAGTACTGAC	alt_2283_RC	26	49	38	34	44	35	52	33	35	34
CTACGCTTTGAATCAA	alt_2283_RC	8	12	7	10	13	14	14	5	11	9
CCATAAAAGTCGTTTT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
TAGAACGCATCTGAAA	alt_2283_RC	21	56	30	31	44	36	39	36	37	29
ATTCGTTTACCCTTAT	alt_2283_RC	59	64	59	43	60	47	72	37	81	60
TTTTCGGCGCTCGGAA	alt_2283_RC	6	15	11	10	9	7	7	11	10	6
CGGCTGTACTCCTTAC	alt_2283_RC	12	19	28	21	33	25	19	18	23	16
CCTCACTGCCTATCTC	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
CTTAGCGAAATGGGCA	alt_2283_RC	152	165	147	117	178	137	153	141	175	137
CTCTATATCGCCGGTT	alt_2283_RC	13	31	22	18	32	23	46	28	42	21
CTTTACCTACGGTTCT	alt_2283_RC	0	0	0	0	0	0	0	0	0	0
TTCTACATCTGAGCCT	alt_2283_RC	73	128	103	103	136	78	105	84	137	86
GGACGAATTATAGACC	ref_5165_upstream	44	33	55	28	35	27	35	35	30	28
TAAGTGCTCTATCTGC	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCACGTCTGTTGA	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTGGGTCAATCT	ref_5165_upstream	44	25	51	29	35	33	36	37	31	20
GTTTTTAATAGGCTCT	ref_5165_upstream	6	5	8	8	6	4	9	4	6	6
GGGGCTCTGTTTCCGT	ref_5165_upstream	44	41	50	24	54	34	36	44	50	22
TAAGGGGGGCTAGCGA	ref_5165_upstream	5	1	2	4	2	6	0	2	3	6
AATTCTGTATGCATTG	ref_5165_upstream	26	22	15	15	24	20	19	20	26	19
GAAAAGATCGCATGTA	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTATGGTGCTACA	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
AACCGCGTCTCCATCT	ref_5165_upstream	44	64	60	46	67	25	51	58	66	46
CACTTCTGAGTTATGA	ref_5165_upstream	99	73	115	107	78	93	77	74	88	82
CCGCGTTTATGACCAG	ref_5165_upstream	100	129	136	115	120	87	149	107	114	97
TTTACTTCTGTGGTGC	ref_5165_upstream	39	41	58	47	39	37	40	32	34	30
CGTTTTACCAATGAGG	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGCTAATCGATCT	ref_5165_upstream	46	35	60	53	38	53	55	33	52	34
TCCGCTTGAGGTATGT	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
AACAGAGTGTCTTATA	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTAGCCCTTCCGT	ref_5165_upstream	34	26	40	30	20	27	31	19	29	30
GTCCCTTAATAAAACT	ref_5165_upstream	8	5	2	4	3	1	7	5	9	7
ACCCTTATCTCTCGCG	ref_5165_upstream	279	234	293	238	245	256	230	210	228	218
TGATTATTTTCTGGTG	ref_5165_upstream	42	51	42	40	25	57	46	39	54	42
CCATATTAGCACATGT	ref_5165_upstream	45	54	56	58	37	46	59	49	51	35
AATATTAATAATTCCC	ref_5165_upstream	327	267	398	346	318	341	297	327	278	304
CGACGTGCCAGAGGTA	ref_5165_upstream	69	114	112	87	95	59	111	87	127	74
ATTCATCTTCGAGCAT	ref_5165_upstream	2	6	8	5	2	4	5	4	4	5
GGGAGTGGACTGTCTA	ref_5165_upstream	2	10	11	5	8	10	8	10	6	6
TAGAACGCTCTCGTGG	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
GACGTAGGCATCGCGT	ref_5165_upstream	9	7	5	5	12	6	9	5	7	5
ACTGGCTTAGTGCCCT	ref_5165_upstream	23	16	29	16	24	19	15	12	24	14
CGTTATCTTCTGACCA	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTATTTTTTATG	ref_5165_upstream	1	0	0	1	0	0	0	5	0	0
ATGTCGGGTCCCGATG	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
CGCTACGGGTGCCTCG	ref_5165_upstream	16	20	24	26	22	20	33	21	29	25
TCTCATCGCATATTAA	ref_5165_upstream	71	68	109	66	79	72	83	68	85	82
CCCTAGCAATATCATT	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
CTAATTCTAACTCAAA	ref_5165_upstream	49	72	68	47	60	58	56	40	46	55
ACTAGCATTATGTAGG	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGTGCGATCCAGC	ref_5165_upstream	121	130	140	119	127	123	155	101	144	130
CCTTCTGTGCAGGCAT	ref_5165_upstream	35	43	40	27	34	17	28	22	31	26
ACAGAAGCTGGAGGCT	ref_5165_upstream	59	39	39	40	33	27	31	36	45	52
TAAAATTACCTCCTAC	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGAGCCGTGGTTC	ref_5165_upstream	47	65	54	38	55	55	49	59	63	32
CGTGGGCGCGGACTAC	ref_5165_upstream	93	117	91	82	112	91	83	93	103	69
GGTCCCCCGTTTTGCC	ref_5165_upstream	54	57	59	38	47	53	77	39	68	49
CGTTATAGTGGATTGT	ref_5165_upstream	217	211	256	224	223	181	231	176	231	189
TATAAACTACAATTGC	ref_5165_upstream	39	39	48	38	41	45	40	36	57	47
ATGTTACATAGTCTTT	ref_5165_upstream	26	29	22	20	20	17	19	16	29	15
ATCGAATTAGTTCTGG	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
CTACTTCATCCGTCCT	ref_5165_upstream	27	24	44	29	39	31	35	32	24	34
TTTGGTGAGTACGTGC	ref_5165_upstream	100	83	95	79	86	80	111	84	92	78
TGTGTCTTTGCTGCCC	ref_5165_upstream	19	13	21	19	21	22	20	14	23	15
GTACATTGGTAAGAAA	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
GGGATTGTGTCTCTTT	ref_5165_upstream	1	4	7	1	3	3	1	2	6	3
TGGACGCCCAGGACCC	ref_5165_upstream	60	36	76	50	46	47	53	40	53	60
TGAGGTAATATTCTGA	ref_5165_upstream	28	36	30	18	20	45	40	32	21	34
TCCGCGATCAAGAGCG	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
CTGCATGATCTATACA	ref_5165_upstream	31	33	33	24	30	35	38	37	28	26
GAGTCCACTTTCTATC	ref_5165_upstream	36	42	31	32	31	24	41	30	24	21
TCCATTTGCCGTCTAC	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCAGAGGTATTAG	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
GGCAATTGGATTCGGG	ref_5165_upstream	28	39	51	33	38	37	36	25	49	30
ACAAAATCGACGGTGA	ref_5165_upstream	6	2	5	6	1	0	4	3	4	3
TGTCGGATTCACCGTG	ref_5165_upstream	39	21	58	48	32	39	36	27	25	36
GCCGCAGCTCGCGGAT	ref_5165_upstream	7	10	7	12	7	10	10	5	10	10
CTGGTTGCGGGAGCGC	ref_5165_upstream	189	213	210	181	207	165	209	167	237	191
ATTTACAGGGAGCTTC	ref_5165_upstream	57	66	60	58	57	47	50	46	78	66
ACCCTTTTTGCCCCTT	ref_5165_upstream	45	46	37	37	47	41	57	54	50	34
GACCTGGTACAATCCA	ref_5165_upstream	19	14	23	7	20	15	24	23	22	11
CTTTACACCCACATGG	ref_5165_upstream	7	4	8	7	3	5	6	4	6	4
AACGTTCGAAAACCAG	ref_5165_upstream	4	6	11	4	7	11	5	3	9	8
CATGTCCAACCGCACA	ref_5165_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGATAGATCCTCG	ref_5165_upstream	40	31	50	26	36	30	51	32	48	31
CCCTAGCAATATCGTT	ref_5165_upstream	18	34	26	17	29	14	29	6	35	20
TACATTGCGGACGCGC	ref_5165_upstream	30	34	36	25	25	29	34	28	45	15
CTTTTTATGCAGGATG	ref_5165_upstream	62	64	54	45	58	54	51	43	55	41
GACCATAAGTCTCGTG	ref_5901_new	17	43	13	14	53	12	45	13	56	9
ATGTCCACGGAACGTT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TCCTGTAAGGGAGAAC	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TGCCCTGTTTTAAGGA	ref_5901_new	5	17	8	9	13	5	15	6	17	4
TTTAGCACGTGATACT	ref_5901_new	30	62	37	20	58	27	67	25	60	24
AAAACGTCTAGAGGCG	ref_5901_new	0	0	0	0	0	0	0	0	0	0
ATGCTTTGATGGAGCG	ref_5901_new	8	9	9	3	13	9	13	6	11	3
TGTTGTAAATTCAGTG	ref_5901_new	0	0	0	0	0	0	0	0	0	0
GCGCATCATGTCAACC	ref_5901_new	10	33	9	8	35	7	23	12	28	12
GTTGGGTTGGATTCTG	ref_5901_new	6	18	7	3	18	1	30	1	16	2
GGCCCGCTCGCTCAAT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TCTGGCGTATGGCCAT	ref_5901_new	17	16	12	8	18	11	22	8	26	16
ATGCCATCTCTAAAGT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
GAGGGGGCTCCTCAGA	ref_5901_new	8	26	15	7	21	15	13	12	17	12
TATGTCGTCAAGCGAT	ref_5901_new	16	52	28	27	51	19	60	16	64	21
TATCCCGTTCGCTGTG	ref_5901_new	0	4	2	1	0	0	3	1	5	0
CCACGGGTTAGTCCTC	ref_5901_new	5	12	6	7	5	4	8	7	10	3
CGTGTCACAATTACCT	ref_5901_new	6	52	7	10	56	6	60	6	50	4
GTGTGCTTACAGCCGT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TGAAGTAAACTCCCAT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CTCTAATCAGTGCGTT	ref_5901_new	29	70	36	18	73	26	74	35	72	25
TTATAAGATTAAGGGG	ref_5901_new	4	10	10	3	11	6	8	12	12	3
GCACGTGTTCGCTGTT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
GTTAACTACTTTTCCT	ref_5901_new	11	22	19	21	35	7	40	14	53	20
TTGTATTTAGTTTGAT	ref_5901_new	15	43	36	33	68	34	73	24	51	24
TCGCGGAATTTGACTC	ref_5901_new	1	6	0	1	3	1	5	2	1	1
AATTGCTTTGGGTATC	ref_5901_new	40	53	31	21	60	24	58	13	61	17
GAGTATACGTACACTG	ref_5901_new	18	72	28	28	59	34	58	20	60	20
AATGTTTTTGAAGTCC	ref_5901_new	0	0	0	0	0	0	0	0	0	0
ACCACATATCGGCTGT	ref_5901_new	4	2	3	1	7	2	7	0	6	1
TAGAAAGTAATGATAA	ref_5901_new	5	12	2	2	7	1	6	4	10	3
ATTGCGGTGGTCATGT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
GTGATAACGAGTGCCG	ref_5901_new	14	24	16	13	36	21	25	15	36	11
GCATCGCGAAGGGCAT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TGTATTTATTGCCGTG	ref_5901_new	19	50	34	24	58	25	58	27	62	32
ATCGTCGCCTGGAGAC	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CCTAGATTATTATCTG	ref_5901_new	4	31	8	8	20	4	21	5	17	22
TCTTTTGTAATTATGG	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CTGTCAGTCCAGGGAT	ref_5901_new	2	7	2	1	8	2	6	1	8	2
AGTATATTTATCCAGT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CCTATATCAACTTCTG	ref_5901_new	18	41	17	17	30	21	35	18	42	13
TAGTGGGTTCCGTCTA	ref_5901_new	23	102	37	39	112	29	117	42	95	30
TTCCGCGGGCGTCCGC	ref_5901_new	4	25	13	10	17	17	20	8	15	8
CGCCCCTTTGTAGCGT	ref_5901_new	7	55	18	12	35	13	49	9	55	11
TGCATGGAGGTAAGGA	ref_5901_new	18	38	23	33	40	26	51	19	59	28
GCCCTTTTTAATCAGG	ref_5901_new	10	31	11	8	15	6	17	6	20	6
CGGATAGACCCTATTG	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CAGTTTTAACCGGAAG	ref_5901_new	10	11	15	21	39	12	22	7	13	7
CACATCGTTAAAGTGA	ref_5901_new	4	9	0	4	3	5	4	3	20	1
GCCTTAATATTGCTTC	ref_5901_new	9	15	6	2	4	1	7	4	10	1
ACTTCTCGCTTCATTC	ref_5901_new	22	92	25	33	69	20	57	30	84	19
TCTCCGCAATGGTAGT	ref_5901_new	8	21	13	16	22	21	34	11	25	9
TTAGATCTGTGCGTGA	ref_5901_new	4	16	6	1	9	2	17	2	17	0
CTTAATACAAGAGAAA	ref_5901_new	3	11	9	10	7	3	16	5	14	3
TGTGCGTTTTGTCATC	ref_5901_new	0	0	0	0	0	0	0	0	0	0
ATGCTGGGCGCTGCCA	ref_5901_new	0	0	0	0	0	0	0	0	0	0
GGCCTGGTAGGACTCT	ref_5901_new	2	11	5	1	8	2	6	2	6	2
TTTCATATACATTACT	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TGAAAGACCCTACTTA	ref_5901_new	19	60	19	20	37	16	51	17	45	18
AAGAGTTCGGCTAATG	ref_5901_new	11	41	17	15	35	7	23	11	29	20
TAGAGGTAGTGTCCAT	ref_5901_new	4	6	3	3	14	4	13	3	10	0
CTTGCAATGCCTAAAT	ref_5901_new	15	48	25	18	48	11	47	17	65	12
CTTTATACTCTTCAGT	ref_5901_new	14	18	20	12	34	14	31	16	43	16
AACACCTCGGTGGATC	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CCAGCTGAGCTTATTC	alt_5901_new	11	48	12	6	39	17	52	11	45	9
TAATATGACCCTTGGC	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TCGGCACATGGGGCGC	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CGCTAGGGTATAAAAG	ref_5901_new	3	15	3	0	21	5	19	2	17	8
CACACAATCTATAAAG	ref_5901_new	0	0	0	0	0	0	0	0	0	0
ATCGTTTTTATCTATG	ref_5901_new	0	0	0	0	0	0	0	0	0	0
TTCGTTTCTTGTTGGG	ref_5901_new	0	0	0	0	0	0	0	0	0	0
CTCTGCACCCCACAAG	ref_5901_new	0	2	1	1	2	2	1	0	2	0
GCGTTATCGTCCAGGC	ref_5901_new	0	5	0	0	2	1	1	0	3	1
GTAAGGCTCGTATTCC	ref_5901_new	9	15	7	4	17	9	17	2	8	5
GATTACCACGTTGTTT	ref_5901_new	50	83	48	24	82	30	107	38	78	48
CTATTAAATGTACCAT	ref_5901_new	16	49	13	15	57	12	58	11	50	12
CCATTCCTGAATGCTA	ref_5901_new	9	20	10	3	24	1	30	7	33	8
ACTATTGATCATCGTA	ref_5901_new	0	0	0	0	0	0	0	0	0	0
GACCGAGGTTGTTCAG	ref_2112_upstream	36	77	55	44	79	41	61	37	57	47
TCGCCTTTCATGATTT	ref_2112_upstream	22	38	27	19	56	22	38	18	55	20
CGAGCATATGCCAGGC	ref_2112_upstream	15	23	14	9	18	10	22	5	17	2
GAAAGTCATAAAGTTT	ref_2112_upstream	47	64	57	54	80	43	78	56	88	56
ACCCGCCTTCGCACGG	ref_2112_upstream	30	27	24	45	33	21	38	19	24	26
TCGTTTGTATCACTTT	ref_2112_upstream	49	84	59	55	68	43	75	53	70	48
TCTATTTTTATATTGG	ref_2112_upstream	0	7	2	3	7	3	6	2	1	4
TTGGTCTTCGCCGGTG	ref_2112_upstream	71	94	67	63	125	51	100	50	107	63
GTACAGTCGCGCCTCT	ref_2112_upstream	25	22	23	29	22	11	24	18	27	17
TCGTTTTCGGAAGAAC	ref_2112_upstream	0	0	0	0	0	0	0	0	0	0
GTAATCCGTTGCAGTA	ref_2112_upstream	15	15	19	15	21	19	20	11	24	17
CGTGCGTGGTATTTAG	ref_2112_upstream	13	17	8	12	7	5	4	5	11	3
GAAACTTTTGGCATGT	ref_2112_upstream	55	85	79	66	88	54	88	52	111	49
TTATGCCGATATGTGA	ref_2112_upstream	71	105	77	53	87	87	93	69	120	52
GGCGGCAACACACTGG	ref_2112_upstream	123	141	159	113	133	108	183	108	168	109
TGAAGGTACTTTTCAG	ref_2112_upstream	35	36	26	40	42	23	27	33	31	20
AGATGAACAGTCTTCC	ref_2112_upstream	54	66	91	62	80	61	77	58	117	54
CAGAACCGTCTTTTTA	ref_2112_upstream	0	0	0	0	0	0	0	0	0	0
TGTCATGATGCGGTTT	ref_2112_upstream	1	1	2	0	6	3	3	1	0	1
TGTCTATATACGAGCG	ref_2112_upstream	35	49	32	32	39	24	39	23	62	27
CCCATTTGTTTCGGGG	ref_2112_upstream	13	18	23	14	19	10	25	11	21	10
CGAACTTTGCGCGAAA	ref_2112_upstream	4	4	8	5	7	5	8	5	3	1
CAACGGGTCGGGTTAT	ref_2112_upstream	11	16	12	8	29	9	20	17	19	18
ACGATTTACACATGAT	ref_2112_upstream	10	18	18	13	15	9	12	8	13	16
CATGATTCATTATTAC	ref_2112_upstream	38	61	57	52	59	44	61	39	65	38
TTCGGGTATGGTTTTA	ref_2112_upstream	29	32	37	25	36	28	41	20	39	26
CTACTACTTGGTCCAT	ref_2112_upstream	0	0	0	0	0	0	0	0	0	0
ATGATTCACTAGAACT	ref_2112_upstream	4	8	12	12	12	8	13	6	11	4
TATGCCGTGAACCTAT	ref_2112_upstream	15	29	25	17	34	17	36	13	55	28
TCTGTTCGTCGGGTCT	ref_2112_upstream	30	63	50	39	53	39	53	35	55	34
TCGTTTTATCATTCCC	ref_2112_upstream	48	65	60	57	71	44	70	45	61	60
CCTTAGGTATGGGATA	ref_2112_upstream	25	36	22	24	45	25	40	31	45	25
TGCTCAGCGTGTAGCA	ref_2112_upstream	32	21	29	26	26	21	43	27	46	19
ACTGTGAACATGTGAT	ref_2112_upstream	19	20	20	18	21	15	21	14	38	12
CTGTCCTTTAGCGTTA	ref_2009_upstream	5	8	5	7	3	2	2	4	7	7
GATTTTCGTCCACGCT	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CTTGTCCGCGATTTCT	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
AACCTCCGATTCTATA	ref_2009_upstream	27	46	48	28	41	20	50	31	44	37
TGCTCCTATATAGATA	ref_2009_upstream	11	28	14	20	30	6	30	9	33	10
CTACCTCATCTTCTCA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTTGTCGTCTCGG	ref_2009_upstream	23	20	22	17	41	19	25	21	24	17
ATTTACGAGCTTGGTG	ref_2009_upstream	29	42	36	25	33	26	27	22	36	25
CTTTGAGGAAAGTTCA	ref_2009_upstream	57	88	82	61	115	45	124	65	134	73
CAACGTTAGCGACAGA	ref_2009_upstream	1	6	5	1	6	2	4	1	6	4
TATTCAGCAGTACTAT	ref_2009_upstream	3	1	0	0	2	3	3	1	1	1
CCGAGAATTACGCGCA	ref_2009_upstream	12	17	19	27	21	17	29	22	36	17
AGAACCATCTTTGGCC	ref_2009_upstream	3	12	20	10	18	12	19	6	18	11
CCGGTTCTGAGAAGGA	ref_2009_upstream	3	4	4	4	10	6	9	6	9	3
GTAAACAGTGGGACCC	ref_2009_upstream	9	18	11	17	17	6	12	4	12	14
GGCTTCGCGCCCTGGA	ref_2009_upstream	21	33	16	14	20	26	19	15	34	18
GCCAGTTGACACCGCG	ref_2009_upstream	14	44	9	12	46	22	46	21	38	19
CGGCTTGTTTACTTAG	ref_2009_upstream	20	18	18	15	22	10	36	21	31	12
CCGGTAGTGTTCGCCA	ref_2009_upstream	40	75	43	37	58	41	70	28	93	28
TGTTCTGTTATCATTA	ref_2009_upstream	18	18	15	13	29	15	30	18	27	10
CTAACATTAAGACTCC	ref_2009_upstream	6	29	8	3	21	6	32	6	21	9
GACAATTGATTTAAGT	ref_2009_upstream	25	21	26	25	29	15	30	14	37	9
CTGCTCATTTCACAGC	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
ATGATGTTAGGGTTCG	ref_2009_upstream	44	66	47	47	49	40	66	36	60	39
GAAGCACAGATGATAC	ref_2009_upstream	99	139	113	91	122	105	123	83	146	112
ACACAGGTGTTACGGA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CGCCATCATCTTCGCT	ref_2009_upstream	52	70	60	53	60	39	69	34	86	31
GTACGATTTCGATTTG	ref_2009_upstream	45	73	75	51	68	54	71	43	69	43
GCCCATCAGCTCCGTA	ref_2009_upstream	17	29	29	18	20	18	33	28	31	10
TTATAGGCTGCTCTTC	ref_2009_upstream	21	21	22	23	17	11	29	15	28	12
TGTTTGAAACTGTGGT	ref_2009_upstream	18	33	17	32	34	21	38	27	27	21
GTGTTCGCTCGTCCAG	ref_2009_upstream	4	6	5	6	11	8	9	3	14	7
TCAAGGTCATTGGCGG	ref_2009_upstream	3	7	10	4	9	8	6	6	11	1
CAGCGTCGGTCGGCCG	ref_2009_upstream	1	10	6	1	3	0	3	3	3	4
GCTCTTGAAATTGGTT	ref_2009_upstream	17	23	24	25	30	19	27	12	25	10
GGTTCTTCATTCTCAA	ref_2009_upstream	9	18	8	9	23	6	21	12	9	4
CTTTGCCTTTCTCGTT	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTCTCTCTTTCCT	ref_2009_upstream	78	74	59	69	87	78	110	56	91	62
CCCCGTGTGTCCTATA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGTAACTTCCAAT	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGCCCACAACACA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
GAAAGTTCATTGTTAA	ref_2009_upstream	41	44	38	28	53	30	58	37	49	30
TCCTGAGTCTCCACCT	ref_2009_upstream	51	100	83	57	100	55	92	60	106	66
CTTATTGATTTTGTGG	ref_2009_upstream	25	31	33	29	25	16	35	13	30	23
TCCGGAACGAGTCTTT	ref_2009_upstream	10	10	11	4	11	8	11	2	4	5
CCCCGAAGGCCAATGT	ref_2009_upstream	55	121	66	90	125	61	141	52	142	45
AAACCATGATGCGAGG	ref_2009_upstream	6	13	13	10	9	10	12	11	10	9
TAACTCGAGCCGTTCA	ref_2009_upstream	126	184	146	144	184	127	196	115	198	125
ATTTTGTGGAATGAGC	ref_2009_upstream	20	43	39	23	40	21	48	25	52	19
TGATGTCTACATGAGA	ref_2009_upstream	29	58	46	32	40	45	59	23	45	34
GGGTTTCAGGGCGCGT	ref_2009_upstream	18	22	16	26	15	16	19	16	40	16
TGCTTTGCATTCCTTT	ref_2009_upstream	25	55	47	36	54	32	62	31	43	33
ATATACGATCTAGCAT	ref_2009_upstream	7	5	8	2	4	6	4	4	2	5
TAGCTTACCGGGCAGT	ref_2009_upstream	6	7	7	8	13	3	7	6	11	4
CATTTTGGGGTTCAAT	ref_2009_upstream	7	2	6	5	7	6	5	5	6	7
ATATGTTATCAGTGTT	ref_2009_upstream	46	81	85	46	91	43	99	35	96	78
GTCCGCAGCTTACCAC	ref_2009_upstream	15	30	23	24	31	14	35	22	40	10
CTCTAGACTCCGTTCA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGTGACCTGCAAA	ref_2009_upstream	3	6	2	6	6	3	5	6	9	2
AGTACTCCTTGCGCTG	ref_2009_upstream	18	50	31	23	56	27	49	22	41	22
GCACTAGCTCCATATC	ref_2009_upstream	7	15	12	15	23	21	12	7	8	9
ACGTGCGAAATTCGAG	ref_2009_upstream	36	32	31	23	38	27	34	16	47	25
CTCCTACCCGCCGGAT	ref_2009_upstream	3	8	8	5	5	1	10	5	4	3
GATATAGAAATCTTGC	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
TCACTTCTGGCGAGCG	ref_2009_upstream	106	117	137	94	150	97	152	96	146	85
GGACTTTGTGTCAGCA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTGTTACATACTC	ref_2009_upstream	19	23	15	11	17	13	17	19	24	12
TGCGGTCCCATGTAAC	ref_2009_upstream	29	20	20	6	29	22	29	20	24	19
TACCCTTCTAGTAATA	ref_2009_upstream	14	35	15	22	43	12	39	15	30	15
CCTAAGAACTCGCCTG	ref_2009_upstream	6	30	20	17	26	9	35	19	33	10
CATTTCGATGTCTGCG	ref_2009_upstream	57	135	85	67	154	63	174	77	176	69
TACGGATGGCCCGGTA	ref_2009_upstream	123	143	139	120	136	101	161	87	172	100
CTCCTTGTGTTTCTGG	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CGGCACTTGAATCTTT	ref_2009_upstream	1	1	3	4	0	0	2	0	0	2
AGTCCATGTTGGCCCT	ref_2009_upstream	15	12	18	15	17	21	21	13	18	18
AGTTCGGTTAACTGGC	ref_2009_upstream	28	34	29	20	38	14	40	20	35	23
CATGAGTCTCTGTCAT	ref_2009_upstream	0	0	0	0	0	0	0	1	0	0
TATTTTTCGTGTAGGA	ref_2009_upstream	23	54	38	31	40	25	41	21	52	24
TTTGTCGTTTCTAGGA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CATCTGTGTCCGCCCA	ref_2009_upstream	10	17	19	23	39	19	27	12	24	9
TGGTACCCTAGAGCCA	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGCATTCACCTCG	ref_2009_upstream	15	14	16	18	8	10	17	14	13	11
CGCTGGTGGCCGCATG	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTTTTACCTAGAC	ref_2009_upstream	26	70	41	24	73	25	65	35	82	22
GGTGGTCCAATTCTAT	ref_2009_upstream	24	34	28	20	43	19	31	22	29	31
GGTAGATTATCCCCTC	ref_2009_upstream	24	33	17	15	32	25	28	10	29	15
TAGTTTGGCCTTAACG	ref_2009_upstream	13	17	16	15	19	10	19	3	8	10
CTATTTATCGCGGTCG	ref_2009_upstream	15	28	23	25	40	17	35	16	34	18
TTATCTAGAGTCCGGC	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CCAGATGAATGTTCCT	ref_2009_upstream	36	49	39	33	48	29	57	29	55	32
CAAGTTCGGACCTAGA	ref_2009_upstream	8	10	7	8	18	7	23	10	18	5
GCGACACCTATATTTC	ref_2009_upstream	10	17	14	6	13	9	10	3	15	7
CTTACTTCTCTAGAAC	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
CGGCAGGGCAGGGCAG	ref_2009_upstream	0	0	0	0	0	0	0	0	0	0
AAGTCTCAAGACCTTT	ref_2009_upstream	15	19	12	16	15	12	16	10	16	12
ACTTGATTGCATGCAG	ref_4012_RC	16	6	10	9	14	13	3	5	9	11
TGTGCTGCCGCTTGCA	ref_4012_RC	26	19	37	20	9	36	19	21	19	16
GCAGAAATGAAGCATC	ref_4012_RC	60	56	87	74	63	70	46	80	56	66
TTTTGACCCGCGTCGT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
ACGACATTGCTTATAA	ref_4012_RC	11	1	7	16	5	6	8	11	8	6
TTCATGTTTTAAAATA	ref_4012_RC	11	13	23	20	13	24	17	20	13	13
CCGTCTGACTTTTAGC	ref_4012_RC	7	9	10	9	10	4	5	2	8	9
TCTGCATGTCTCAGCA	ref_4012_RC	3	1	2	2	0	5	3	3	5	3
GCTTTGGGCCATTAGC	ref_4012_RC	7	9	9	4	5	5	7	3	1	4
GGCGTCGTATTTCTCT	ref_4012_RC	33	27	41	33	18	31	15	27	34	42
TATACTATTGGTAGAT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TCCGGTATACCAGTAC	ref_4012_RC	17	20	21	22	34	17	31	23	37	20
CTATGGCTCTCAGGTC	ref_4012_RC	15	5	12	10	6	14	3	6	3	6
GAAAACCGTCTACTTT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
ACAAGGTGCTCATCGG	ref_4012_RC	93	62	107	82	63	69	45	76	64	86
CTAACGCCTCGTAATC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTCCCATTGAACTTAC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTCTTCAATGCGTAAT	ref_4012_RC	2	1	3	2	3	1	0	0	4	1
TGGGGCCCTCTAACGT	ref_4012_RC	32	10	40	28	12	19	18	23	20	26
TATGAGTCAAATGCTA	ref_4012_RC	3	8	5	11	9	5	9	7	5	8
GCGGGTGCTACTATCT	ref_4012_RC	5	9	13	4	6	9	12	9	3	14
CGTAGCAGTAATTACT	ref_4012_RC	16	14	24	19	13	10	17	20	20	8
CATTTCGTGAGTCACG	ref_4012_RC	114	67	103	114	83	84	68	99	68	117
CCTTCAGGGGAGCTAT	ref_4012_RC	13	9	13	8	2	5	7	17	5	9
CCGGATACAATGCTGT	ref_4012_RC	30	21	43	30	26	32	18	21	22	29
TCTGGCACAAGGGTTT	ref_4012_RC	12	11	11	14	4	14	7	14	4	14
TTGGTTCTTCGTGCTT	ref_4012_RC	13	13	13	19	8	11	12	18	9	10
CAAACTAAACGCAATA	ref_4012_RC	26	20	37	35	22	31	28	45	28	22
GCATCTTTAAATGTAT	ref_4012_RC	75	48	76	66	36	57	40	49	30	34
CGGCCGAACGGGAGTT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
ACCGTGGATTCACACT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTTTCATGCGCGACGG	ref_4012_RC	3	1	2	2	1	9	0	5	0	5
TCATACATCTCGCTGA	ref_4012_RC	9	10	18	18	14	15	17	10	9	12
CGCAACAGCAGTCGAT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GGGTGTCCGTAGCGCG	ref_4012_RC	18	20	27	28	13	23	17	18	16	17
GTCGTTCATTAAAGTG	ref_4012_RC	14	18	36	33	24	34	24	31	17	34
CAACACCTTTTGGGCT	ref_4012_RC	9	8	19	4	5	14	12	5	6	9
GGTTTGAATTCGAAGC	ref_4012_RC	14	15	16	32	8	16	10	18	12	20
GTCTCTACATTAGCGA	ref_4012_RC	4	1	6	4	3	4	6	7	1	3
GTCTATGAGGTTGTGC	ref_4012_RC	51	51	68	57	39	72	41	58	48	39
CGATATTCGGGAAGTT	ref_4012_RC	6	9	5	7	5	7	12	2	6	6
TACGATCTTACTCTGC	ref_4012_RC	13	7	2	7	6	13	17	5	11	6
GTCATACCCTCGTATT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
AGGTCTTCGTGTCTGC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TACATTAAGTATTTCC	ref_4012_RC	1	7	2	4	1	6	1	4	5	5
AACTTGTGTGTATAAC	ref_4012_RC	20	15	30	28	14	13	14	25	37	24
ACTGTGGGCAATAGAT	ref_4012_RC	16	16	21	15	9	9	17	9	7	13
TATCAGATCCCTCCCT	ref_4012_RC	7	5	9	10	4	5	6	9	8	10
TCTGGTGTAAAGTTCC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GGCGCACGTCCCGCCA	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGGGCACTTCGG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TTAGCTGAGTTGGGAA	ref_4012_RC	6	4	0	0	0	1	2	0	2	0
GGCAGCTGCATTTGGA	ref_4012_RC	7	3	1	3	1	8	5	1	4	3
GCATGACTGGTGGTTT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TCGGCTCCCTTGAAAT	ref_4012_RC	15	10	24	20	10	17	15	21	12	14
CTACTACACCACAGTA	ref_4012_RC	26	19	32	12	16	16	11	12	21	22
GCATGTAGAATCGACC	ref_4012_RC	22	10	16	10	9	13	7	8	14	14
CCTTTCTTCTTATCAG	ref_4012_RC	16	20	25	22	23	13	23	19	24	17
GTCTCCTAGGCAATCC	ref_4012_RC	7	10	9	4	3	8	11	5	6	4
GGATCGACTGGCGCCG	ref_4012_RC	13	10	18	21	24	13	20	15	11	12
CTAAATGATAAATCTG	ref_4012_RC	9	3	13	14	8	8	7	2	12	3
TTAGTATCATGTAAAG	ref_4012_RC	5	9	6	12	5	1	4	7	0	4
TCGCCCTTTAGGGCCT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GAGAACCGTGTGCAGC	ref_4012_RC	93	53	113	76	54	79	57	81	53	68
TCGGACGGTTGTATTT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TAAATCCTTGCAGGAA	ref_4012_RC	0	1	0	1	2	0	1	1	0	1
GTGTCGTGTGAAACTC	ref_4012_RC	59	54	75	72	47	65	34	56	45	63
AGCGTTTTGTGTTGTT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
ATCCCTCTACCTGTTG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GATTACGCGATGACTG	ref_4012_RC	19	10	32	29	20	24	13	31	13	20
TCCTTGTCCTGACCGC	ref_4012_RC	1	6	1	2	1	0	5	0	1	1
GGATAGCATAGTCGTT	ref_4012_RC	2	0	5	4	1	1	1	0	4	2
GACCTTTTATTCGTAG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
CGCTATCTCCGCCCAC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
CAGGCCTTAGATCAGG	ref_4012_RC	2	1	2	1	4	5	3	2	1	6
GATCAGCGTTTGTTGT	ref_4012_RC	1	0	0	1	1	0	0	2	0	0
GTTGGTGGTCCAGTTG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
CATTGGTTCCCACGCC	ref_4012_RC	21	15	30	19	15	17	21	24	14	8
TTAGAGTCCCAATTAG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GCCGTAAGCTCCAGTA	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTTTACTTGCATTAAC	ref_4012_RC	6	5	13	11	3	11	14	5	10	8
GGGTCGGAACCGTATT	ref_4012_RC	16	11	12	18	12	8	12	14	13	15
TGCGCTAGCATTGGAT	ref_4012_RC	12	6	10	5	14	11	11	7	8	12
AGGGATATATTCTAAC	ref_4012_RC	142	74	155	156	83	139	102	140	75	114
CGGCGGAAGACGTCAT	ref_4012_RC	30	13	25	21	20	13	14	21	19	15
ATATTCGAGCAGAAAC	ref_4012_RC	26	14	41	35	15	21	14	19	33	23
TGCTTTGATGTTTTCG	ref_4012_RC	9	4	12	6	4	4	7	6	7	14
CCTTTAGTCATAGGAG	ref_4012_RC	0	1	1	1	1	0	0	1	0	0
TAATACCTTCGGCCGG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GGTGTGAAGAAGGGGC	ref_4012_RC	70	65	55	68	38	74	37	41	57	55
GTATTCGATGCCTAAC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GAATATATGATTGTGC	ref_4012_RC	3	5	2	2	6	3	4	9	7	1
CTAACATACGCGCCGA	ref_4012_RC	23	10	28	25	20	37	19	25	23	12
TCAATGACGCGGAGGC	ref_4012_RC	15	12	18	16	15	24	14	23	11	7
CCGATCGAACGTTGTA	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TTTAGGGAGGTTTCCA	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TTCTTGTGTGTTAGCG	ref_4012_RC	4	1	3	5	4	7	2	3	1	3
TCGAGGGACTCCTTTG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
ACAGAGTCGGGTCCCG	ref_4012_RC	54	41	60	55	40	48	45	47	43	42
CAAGGTAAGCAGTTGG	ref_4012_RC	36	25	42	39	22	40	28	44	30	51
CTGTATCTCTAGAACA	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTCCACATGGTTTAGC	ref_4012_RC	11	7	6	4	8	7	7	3	3	4
GTCGATACAGTGGCCC	ref_4012_RC	61	47	90	81	46	54	53	76	49	65
GTCGCGTTTCGTCTGC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
ACCTTTACCTTTCGCC	ref_4012_RC	32	40	36	24	38	46	46	29	34	38
CCAGCTGCTTAGTGCC	ref_4012_RC	14	5	18	12	10	21	14	12	12	7
CAGGATTTTCGTACAT	ref_4012_RC	33	41	38	37	27	27	26	31	23	28
TCGACCTTCTGCTCAT	ref_4012_RC	7	4	10	2	3	3	4	8	4	8
TTGCTACCTGTGCTTT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
AGGCCCCCAGCGTCAG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGCAAGTCGGCG	ref_4012_RC	22	7	24	13	12	29	10	21	15	17
TGGCGCCCGAGGTTCG	ref_4012_RC	60	34	89	61	41	54	49	38	23	43
ACCAGGATGCCGCGTT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
AAGTTTTCGGCTTTCG	ref_4012_RC	8	4	4	9	3	4	5	4	7	9
CGTAGAACCTAATGGG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
ATGATAGCGCGATACC	ref_4012_RC	11	9	20	11	7	9	7	7	10	7
CTTAAAGGTCACTGGC	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GACGTAGCGCTTTAGT	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTTGAAGGGGTGGATA	ref_4012_RC	130	102	168	143	83	137	88	140	95	133
GAGTTTTGTAATGTAA	ref_4012_RC	35	19	42	35	39	26	32	32	20	25
CTCCAACACATGTCCA	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GGCCTAAACTTATCCA	ref_4012_RC	26	13	26	20	23	19	21	29	21	27
GCTTTATACCTAGCAC	ref_4012_RC	7	8	9	10	5	6	4	7	2	4
CTATGTCAAAGTTCAG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTGTTGTTTAAGATGG	ref_4012_RC	25	6	21	14	6	15	13	10	7	11
GGCTAGGATTAAGTGG	ref_4012_RC	0	0	0	0	0	0	0	0	0	0
GTCCCTATACAAATCC	ref_4012_RC	0	4	7	3	1	2	0	4	4	0
ACCAATGTTTAGTATG	ref_4012_RC	22	4	22	12	22	17	8	15	18	15
CATTGATTGCGCGGAG	ref_4012_RC	5	10	10	18	10	6	6	12	9	9
CTTAGTGGATACCTGC	ref_4012_RC	64	40	65	77	53	69	66	52	43	48
CAGTCCTCCACTGCTT	ref_4012_RC	43	19	63	47	33	46	35	54	32	34
TGCTTTGTCAAGTCGG	ref_4012_RC	23	8	24	21	16	23	17	11	9	23
GCGTCCTTCACGTTGA	ref_4012_RC	37	29	68	36	43	60	35	42	25	36
CTATAACCTTACAGCA	ref_4012_RC	33	30	47	58	26	45	32	41	43	35
TTATCGGGACCAACCG	ref_4012_RC	14	8	16	17	10	6	5	12	4	7
TTCCAAAATAATATTA	alt_3332_upstream	0	9	2	2	8	3	14	2	7	0
GGCCTGTGTGCGCCCT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTATAACCATATAAGA	alt_3332_upstream	27	22	36	30	28	45	23	32	32	32
TTCCGTCATGTAACAT	alt_3332_upstream	45	20	57	29	32	35	36	34	41	41
CGACACAGTTAATTTC	alt_3332_upstream	16	7	22	13	12	25	8	30	14	11
GTTCCCGCTTCGGACT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTGAGTCGTATTG	alt_3332_upstream	47	32	46	28	23	43	43	44	31	32
GTTGGCTTAATCGCAC	alt_3332_upstream	61	33	82	69	35	54	32	61	46	45
TTCTAAGCGGGTTCTC	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
ACTCAGTATCAGTACT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCCATTGCTCACGGCG	alt_3332_upstream	29	13	16	17	15	23	9	28	15	12
CATCGTTCCCAGCTTA	alt_3332_upstream	72	45	107	62	51	73	46	59	39	56
CTTCAATATGTGGTGC	alt_3332_upstream	102	94	149	126	97	97	87	108	84	86
ATCTATCGTGGGTAGC	alt_3332_upstream	41	30	54	45	32	37	20	39	45	30
CCGGAATTTGCCAGGT	alt_3332_upstream	182	78	182	189	101	193	111	142	127	154
TGGCCGATATGCTTAC	alt_3332_upstream	3	4	5	5	2	7	10	12	5	5
CTTTAGATCAAAAATG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTCCACGCCCTATTCT	alt_3332_upstream	7	10	13	6	11	9	6	10	12	7
CTTGATTATTGCGGTA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
CAATCCGTTAGCTCCT	alt_3332_upstream	73	44	75	63	42	67	40	45	42	46
GGAGCTCTGCCCTTAT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
AAACCGGACAGCTCAA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTATTACGTTCTTCCA	alt_3332_upstream	22	27	58	52	26	38	17	41	17	33
TGTGCCCCTCCCTCTT	alt_3332_upstream	41	45	74	70	34	71	27	36	41	40
AACTTGTCTGATGAAC	alt_3332_upstream	38	27	39	31	37	42	24	32	31	32
CACCCCCCTTGGGTGC	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
CTAATTTTGTTTTGTT	alt_3332_upstream	178	104	229	209	92	185	105	179	100	131
TGGAAATGTACAGGCA	alt_3332_upstream	30	12	20	31	16	19	12	32	10	21
CTTGCGCTGGCTATGG	alt_3332_upstream	17	11	22	14	14	9	11	12	13	13
TAGACAGTCCAATTTT	alt_3332_upstream	31	27	42	40	28	26	35	41	37	26
CGATTCGGTGTAATTA	alt_3332_upstream	71	52	77	86	50	65	68	77	86	66
CCTGAACCAGGGACCT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGAGCTTTCGCCA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GGCGAATTCATAGTGA	alt_3332_upstream	28	9	23	10	8	29	11	14	9	11
TCGGTTGTGGACATTT	alt_3332_upstream	32	17	34	19	12	20	15	22	15	22
ATATTATAGAGGATCC	alt_3332_upstream	29	8	22	20	17	22	16	18	12	18
TGTAAGGTGAGGTGAA	alt_3332_upstream	24	27	58	32	29	38	26	24	31	33
TAGCTTATCCTTCCGG	alt_3332_upstream	77	35	81	76	41	57	38	70	55	55
CCTTTTATCGCAGTGG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
ATACCGTTGGATTCTT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTTCACCAGGCTT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTTCTCTAGGCTA	alt_3332_upstream	121	108	158	145	98	122	118	133	109	105
GGAAAATCTATCACGC	alt_3332_upstream	49	25	74	60	34	65	36	44	28	61
TTTCTAAGGCGCAGTT	alt_3332_upstream	21	27	26	36	13	32	27	22	26	30
CCCGTACCCGTTATTA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTTACTCCAAGAT	alt_3332_upstream	25	7	21	21	14	16	13	12	10	12
GTCTCACCTCACTGTT	alt_3332_upstream	101	83	96	82	87	72	73	92	86	79
AGTGTTGTATAGCATT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCCAAAATATACTTCT	alt_3332_upstream	11	14	9	6	13	5	14	8	16	6
TGGGGGCATCCGTATT	alt_3332_upstream	34	14	47	31	18	28	25	36	35	24
GTATCTTTGCCGGCTA	alt_3332_upstream	79	39	88	77	68	81	58	107	46	85
CACTCATCTAGAAGGG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCCACGATTGGTATGG	alt_3332_upstream	47	41	82	60	39	48	46	62	56	42
CTTTGTCACTTTTGCA	alt_3332_upstream	84	49	118	87	65	91	53	93	61	80
TCTTGAGACTATCGCT	alt_3332_upstream	57	37	98	44	41	72	39	48	27	33
CGAGAGGGTACAACTT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCTACAGCGAATG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TACCCCTTGTGCAATC	alt_3332_upstream	12	10	26	17	18	15	10	10	8	15
GTGTGAAAATGGAATT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTCCCGTCATGA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTTTTCCTCATT	alt_3332_upstream	35	17	41	37	20	37	26	36	14	41
GATGTCTTGTACAGCG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
AGCGGAGGTCCTATTC	alt_3332_upstream	15	11	19	4	6	15	14	10	4	8
GATAAAAAAGCTGTCT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
ACTACATATACGGGTC	alt_3332_upstream	241	179	312	272	162	255	175	248	210	201
GGGTAGGGGGATATTG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GTTCCGGGAAGGTATG	alt_3332_upstream	132	82	193	157	80	148	106	150	96	107
GTCAGCATATGACTGC	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GTAAATGGTGACCCAA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
AGTCGGAGCGGTGCTC	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTTTCTCTACCT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCTGATTTGTTCGGGG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
CCAGACCAGAGATGAA	alt_3332_upstream	43	55	55	51	52	38	49	34	53	38
CGCTAATCGCTCGCCC	alt_3332_upstream	2	4	4	3	8	2	8	3	5	1
TTTTTGTTAACTCTTG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTACATTCTTATTCTT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
CGAGACTGACATTCGC	alt_3332_upstream	5	1	4	1	0	1	3	5	1	2
CTATCATTATGTGTAG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
ATATTTCTAGTAACAT	alt_3332_upstream	4	9	5	6	13	3	3	7	4	7
TTCCTGTCCAAGGTAA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGGCTTTAGGGAG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTTTAGTCAACGG	alt_3332_upstream	56	40	62	46	39	58	49	54	39	53
ATGTCGTTCATCTTGG	alt_3332_upstream	31	12	38	37	16	45	20	33	23	32
ATGCCTACGTAAAAGT	alt_3332_upstream	17	23	22	10	22	11	26	19	31	12
CGTAGGTCCTTAGAGG	alt_3332_upstream	76	75	75	67	78	62	79	66	83	73
CACAGGACTATAGACT	alt_3332_upstream	79	67	96	64	58	78	71	70	56	65
TTGTTTATCAAGTTGG	alt_3332_upstream	3	6	6	5	4	6	6	5	5	5
CATTGTCCTAACCTTT	alt_3332_upstream	11	2	16	7	1	6	7	8	15	5
GATTTTGAGATCTGTG	alt_3332_upstream	17	5	18	15	14	15	18	21	10	29
TACAGGCTGAAGGCCT	alt_3332_upstream	24	20	30	23	24	37	13	26	12	24
GGTGTGTACGCTTCAC	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGTGTTAATCGCG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGAAGCGGATTAT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GTCCGACGATTTCTTT	alt_3332_upstream	23	16	39	28	15	40	28	27	19	33
TTTAAATATATGTTCC	alt_3332_upstream	248	138	275	226	128	236	114	209	132	191
TTTACTTTAGGCATAT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
AGATCGCGTCCAAGCG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TCGGACATGGTTTTCT	alt_3332_upstream	28	10	34	30	17	32	12	12	8	22
TTACTTGACTGTATTT	alt_3332_upstream	53	37	48	54	40	49	38	53	37	56
CTTCCGTCGGTCCGCT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
GGGTGGCCGGAACCGG	alt_3332_upstream	4	3	7	7	8	7	6	10	4	5
TGATTCAATGGTCGCC	alt_3332_upstream	281	171	354	306	145	279	178	233	207	230
CGAACTGAGCATCATA	alt_3332_upstream	110	57	140	112	88	97	79	93	91	93
ATTTCCGAACTTCGTT	alt_3332_upstream	162	89	176	189	116	137	93	150	127	147
CGCTGTAAAACAGTAA	alt_3332_upstream	60	39	84	71	33	69	55	58	53	66
GGTATTTTAGATCACG	alt_3332_upstream	102	67	151	116	90	125	80	110	73	104
CGTTCGAGTCATTTTC	alt_3332_upstream	39	18	55	48	43	53	24	37	38	28
TGGTCCCGCCGATGTG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGGTTGCTACTTA	alt_3332_upstream	2	39	2	1	21	0	24	3	14	4
TTATATCAGGTCAAGA	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGTATTGACCAAA	alt_3332_upstream	18	18	21	20	21	17	13	21	23	14
TAATGTAGGTATCATG	alt_3332_upstream	10	13	11	12	6	8	10	7	10	12
CGGTACCTTCTGCTAT	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCACAACTCGTCG	alt_3332_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCTTATTGGGCTA	alt_3332_upstream	58	43	73	67	48	51	34	50	39	56
GAGCAATCAAGTGATT	alt_3332_upstream	64	49	119	88	42	76	69	71	62	77
TTCTTGTAAGGCGAAT	alt_3332_upstream	33	26	39	43	31	35	34	32	19	35
ATCTTCGTTTTATTTG	alt_3332_upstream	2	0	3	2	0	4	6	4	0	4
TGGTTCCGAAGTTGGA	alt_3332_upstream	76	57	109	113	35	105	73	93	73	90
AGATGATTCGTACAGC	alt_3332_upstream	215	134	234	181	136	180	149	166	137	195
TGCGCCCTCCTCAGCG	ref_3129_upstream	98	44	122	116	43	101	38	101	56	110
GCTCGGTTCGCTGCTA	ref_3129_upstream	236	89	260	247	83	211	77	241	101	205
TTCTGGAAGATTAGCC	ref_3129_upstream	71	32	126	105	21	95	32	96	27	84
AGACGCAATGGGGGGT	ref_3129_upstream	129	34	134	124	28	107	41	105	29	105
TATGATCTCGTTGTGA	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATCCGGTTTTCCCGCA	ref_3129_upstream	121	26	192	164	43	132	38	112	48	120
AAGACTGTTATGGCCC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGCGCTCAGTGCC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGCCCGCATCTGA	ref_3129_upstream	50	13	65	61	22	66	11	48	15	62
GTTTTTTTTCCTTGTT	ref_3129_upstream	30	10	42	42	8	42	15	43	11	36
CCATCTGACCGGCCTA	ref_3129_upstream	6	22	14	11	27	11	29	16	21	8
GGGAGATACCTTTCTA	ref_3129_upstream	34	10	36	48	12	42	15	36	21	32
CGATGAATGTTTGGGC	ref_3129_upstream	22	6	26	22	9	21	3	19	3	20
GATGGCTAGTTCCCAT	ref_3129_upstream	394	136	475	391	154	362	127	411	132	376
GTTCGGTAGGAGGTCG	ref_3129_upstream	2	1	5	6	1	5	5	5	2	4
TATCCAGCCCCCTCCC	ref_3129_upstream	80	30	131	124	50	89	47	104	35	91
TATACAGTCTCTCCAT	ref_3129_upstream	134	35	163	129	35	150	47	121	54	121
GGTTACGTACAGTTAA	ref_3129_upstream	77	27	94	83	21	80	21	81	27	59
GAACATTTACCATTCC	ref_3129_upstream	66	23	69	73	21	45	14	67	19	51
CACCTAACTGAAGGGG	ref_3129_upstream	234	74	296	271	67	257	63	232	75	193
ACCCAGCTTTCTGTGC	ref_3129_upstream	406	110	510	459	134	385	115	363	143	402
GGGGATGTGGAGTAAT	ref_3129_upstream	1	0	2	0	0	2	0	0	0	1
TATCGTCTAAAAGGCT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTTTTTCACATTA	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGGTAACCAATGT	ref_3129_upstream	16	2	13	14	9	15	4	11	4	14
TAAGGCCGTACTCTCG	ref_3129_upstream	269	74	325	261	70	248	80	262	90	237
TTCGGGAGCTCGGTCG	ref_3129_upstream	18	3	22	19	4	20	6	12	12	11
TGGCGTTTATGCTAGC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTTCTTCATAGT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATACCATGGCCGTCCT	ref_3129_upstream	13	5	18	10	3	11	3	12	6	10
TTCCCTCCTGCAATGC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
AAAAACGTTCGATGGA	ref_3129_upstream	175	55	220	179	35	158	44	154	51	152
AGGTTATTAATTATCT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGACCTTGACTTA	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TACAAGTGTACGTGAT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TACGAGTTCGGCCCTC	ref_3129_upstream	81	20	83	73	19	71	26	80	25	85
TCATAGGAGAATCGCA	ref_3129_upstream	74	22	96	94	24	70	31	85	35	61
ATTACCTATATTTTTG	ref_3129_upstream	343	102	429	359	119	322	109	313	109	295
TGCGATTTTGGCCGAC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CAGCCCACTTGGAACC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TATTGCGGGGACTGCA	ref_3129_upstream	7	2	13	7	3	7	1	7	3	6
CAGAGGCGGCCGTCCT	ref_3129_upstream	83	22	106	102	39	95	36	93	31	93
GGTCCCGGTCGGTTCG	ref_3129_upstream	74	23	92	118	20	68	19	79	29	65
ACTCCGAATTATCAGC	ref_3129_upstream	191	182	198	174	197	151	178	189	204	154
TACTGCTGCTTGCTCG	ref_3129_upstream	96	47	144	121	38	99	45	109	42	122
CAAGTGCTCGTCCCCC	ref_3129_upstream	76	15	84	70	23	54	19	73	17	63
GCACCCTTTTCCGCAA	ref_3129_upstream	42	12	82	57	21	66	20	57	9	47
TCGGAACCGCTTTGCG	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTGCGGTATGTC	ref_3129_upstream	166	60	211	219	60	146	69	147	55	159
TTCAGTTTTTTTTCAC	ref_3129_upstream	185	68	245	181	77	171	63	202	66	148
CATGGGTGCCTTTGTG	ref_3129_upstream	104	33	147	132	45	122	41	111	42	104
GCGATCTAAGAGCAAT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCACTAGACGTAC	ref_3129_upstream	226	88	254	203	97	157	89	227	96	206
AGGCAGTTGCCTCTTA	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTATGTGATTTTATAA	ref_3129_upstream	53	13	77	61	12	73	26	61	23	54
TCCAGTTTCCTGAGCC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGTTGTCTAGCGGTTC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCCTTCTCCACTG	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GGCGGATTAGGCACTA	ref_3129_upstream	90	33	105	118	23	102	26	92	19	70
GACCACCTTGCTTTTC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCTCCTGCGATGC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTGCGGAAACTT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTGCATATACGTG	ref_3129_upstream	143	41	182	170	58	144	50	119	54	149
CCCACGTTGCGCCTCC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TATCATCGGGCACCGA	ref_3129_upstream	442	137	495	477	140	405	133	452	117	409
CTAGGCCGGCGCGTTT	ref_3129_upstream	102	24	103	73	21	93	36	75	39	76
CGACATGAATTCAGTC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GCCCAGCACAGTTTAA	ref_3129_upstream	94	69	138	124	47	108	61	86	56	80
AGGCACGGGGTTCCTA	ref_3129_upstream	36	17	34	63	19	39	10	31	10	28
ATACACAGACGTACTT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TAATGCTGTACCTGCT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCAGGTAATGCG	ref_3129_upstream	115	39	164	117	23	116	38	103	43	94
TCGCTTATTAGGTCTG	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGCAATTTGTGG	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGTTTTTTTTTCA	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TTCATGATTCCGCGTT	ref_3129_upstream	84	25	132	96	30	78	34	98	29	77
GGCTTTACGATTATGC	ref_3129_upstream	192	58	245	221	60	223	61	196	74	170
TGGCTTGCTACTTTGT	ref_3129_upstream	52	9	70	65	14	44	14	67	14	37
GCAGGTACTTCTGGGT	ref_3129_upstream	31	7	32	35	4	33	6	26	17	29
TCCCTGTAACAATGTT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTACGTGTTGTTT	ref_3129_upstream	15	2	13	17	7	18	3	12	1	14
TTTCCTCGTTTCGGTC	ref_3129_upstream	103	35	94	92	29	73	23	81	26	59
TGTTCGCGTTTAATCT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGTTAATTGGTGGGGC	ref_3129_upstream	153	50	208	208	61	139	55	156	82	157
ACATTCGGTCACCATC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCTCTTGCTCTTC	ref_3129_upstream	36	9	38	38	8	35	3	30	11	27
AATAGCGGACTGGTAA	ref_3129_upstream	119	23	135	115	32	110	35	107	34	82
ACATTTGACCTATCTG	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GCCAAAATGTTTTTTT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
AAGGCCGGAAGCCATA	ref_3129_upstream	125	20	130	115	37	112	33	109	34	138
GTGTTAGCAATAGATT	ref_3129_upstream	9	6	15	19	1	11	1	18	1	21
AATACGAAAGGTACAT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ACATTTTAAAAAGTTC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTGGGAAAGATT	ref_3129_upstream	81	24	107	82	19	74	18	84	42	76
ACGCGCCGAGCTGTTC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TATTGCGACCCTAATT	ref_3129_upstream	55	29	93	95	27	72	29	72	12	88
TGCAGACGACGTGAGT	ref_3129_upstream	25	10	35	35	7	21	10	38	7	23
CCCAACACCGATGATC	ref_3129_upstream	69	18	94	82	18	105	25	68	28	69
CTGGTGTTTACAGCCG	ref_3129_upstream	81	28	109	111	31	94	23	104	30	86
GAGGTCTCTTGAGACA	ref_3129_upstream	67	20	80	61	14	38	18	63	26	37
ATCAGCATTGATTGTC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ATATAGCGTAGTTCCG	ref_3129_upstream	357	110	453	345	103	322	102	333	114	353
CATCGACAGTTCTTTT	ref_3129_upstream	66	16	85	66	19	63	21	67	20	54
TTTATCTTTTGTTGGT	ref_3129_upstream	7	2	7	8	3	5	1	2	3	5
GTGAAACCGGGTTTTA	ref_3129_upstream	192	49	216	217	54	191	68	178	67	158
TTGTAGATGTTTTGCG	ref_3129_upstream	113	44	140	113	29	98	30	109	39	85
GTCGGGTTATATCTTA	ref_3129_upstream	40	11	35	29	11	46	12	40	8	29
ATCCTTGCCGCAAGCT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TCATGTTGATTGGACA	ref_3129_upstream	136	42	170	156	51	104	48	130	48	108
CATGTCGTCAGGCTGA	ref_3129_upstream	83	32	91	78	31	116	42	76	29	81
CCCGCAACTCATAGTC	ref_3129_upstream	93	30	137	122	33	104	28	107	28	92
CCTTTATAGTAATCCT	ref_3129_upstream	231	58	258	245	62	183	71	161	67	176
CATTACCCTCACCATG	ref_3129_upstream	302	98	293	251	96	266	111	287	102	228
ATATGTTGATTAACAA	ref_3129_upstream	155	38	161	134	40	120	43	130	28	110
AATTTTCATTCGCGGT	ref_3129_upstream	38	11	51	54	10	44	10	41	9	30
TTATCTGTCCGTTTAG	ref_3129_upstream	137	54	176	153	62	144	62	116	62	127
CTATACCAAATGTTGG	ref_3129_upstream	0	0	1	1	0	0	0	1	0	2
GATGTTCCGGTAGATG	ref_3129_upstream	238	52	276	266	77	198	56	230	88	229
ATCTTACAAGGTACTA	ref_3129_upstream	162	57	206	169	59	152	58	165	54	157
CTTCAATATTGTCGTA	ref_3129_upstream	150	43	173	165	40	148	31	134	30	121
CATGTTTTGCCTTGGC	ref_3129_upstream	41	21	69	54	17	42	23	37	20	58
GGCAACGTTTGTCATT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGGTGTATCTTTT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CTACTACAACCCGGAG	ref_3129_upstream	72	26	50	50	23	53	26	52	18	42
GTGCTCGTCTTCGGCG	ref_3129_upstream	9	17	8	7	24	12	8	10	18	9
GGCCTGTATCCTCTAC	ref_3129_upstream	21	4	25	17	15	15	7	11	13	14
GGGCCCCGTTGTGATA	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GAAACTAATTCGAAAA	ref_3129_upstream	114	47	145	133	33	124	32	125	23	91
CAGTCGTGTTCCCGCT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
ACCGGTTTGTACGCAT	ref_3129_upstream	5	5	7	2	4	9	8	2	7	2
TTGTCGGTTCAATGAT	ref_3129_upstream	41	9	55	38	12	51	9	53	23	37
TTAAGCCGCAGGATTA	ref_3129_upstream	159	42	193	188	66	169	74	177	64	134
CCTGTGGGATATGTGC	ref_3129_upstream	73	23	98	82	23	64	21	56	17	65
CGACGAGTTCCTCCGG	ref_3129_upstream	72	31	97	76	19	84	27	72	32	66
CTCGTCAATATGTCGT	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
CGACCCTCTAGGCTCA	ref_3129_upstream	319	86	423	381	115	319	98	342	93	285
ATGTATCACGTCACAG	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
AGGGTTATTACTGCGC	ref_3129_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTTACGGTCGTAT	ref_3129_upstream	272	96	316	247	91	274	88	219	84	219
TGGCCGTTAATAACCG	ref_126_missing	0	0	0	0	0	0	0	0	0	0
GATGCTCAGCCGATTC	alt_126_missing	20	21	23	6	24	15	27	8	12	9
TCGTAGCCATCTTACC	ref_126_missing	8	22	7	5	31	5	33	9	30	9
TTCCTTTTCGCTCTTA	ref_126_missing	64	88	82	68	86	59	87	62	80	49
TCAGTCTTCCGGATAC	ref_126_missing	0	4	1	0	1	2	0	0	0	0
ACAGCCAGTGGGAATT	ref_126_missing	5	28	10	8	35	8	33	10	29	8
GGCAAATTTAACTGGG	ref_126_missing	10	25	18	17	19	13	17	8	21	14
CAATTCTCATGGTGAT	ref_126_missing	113	207	148	122	205	105	195	106	219	83
CGATCTGCGTGATCAT	ref_126_missing	78	86	87	80	83	78	105	59	82	68
TTCAGTTGTTCAATCT	ref_126_missing	0	0	0	0	0	0	0	0	0	0
GGCGTGCACTTGTGTC	ref_126_missing	6	13	7	5	12	7	10	11	17	12
CGGCGAGTACTTAGTG	ref_126_missing	4	9	16	11	14	4	15	3	16	11
CTCGGGACGGGCGGCT	ref_126_missing	0	0	0	0	0	0	0	0	0	0
TCACTTTGTGTCCCTG	ref_126_missing	60	78	69	56	88	51	80	54	74	42
TCAGATTTCAACAATA	ref_126_missing	100	141	122	104	131	103	156	98	143	111
GCTTCAGGATGTTCTG	ref_126_missing	0	0	0	0	0	0	0	0	0	0
CATATGCTGCGTTTAC	ref_126_missing	20	34	33	25	46	34	26	25	36	26
TTATTCCATCACTCTG	ref_126_missing	28	42	34	49	50	40	69	40	62	29
GGACTGTCATTCTTAG	ref_126_missing	8	24	9	8	12	10	16	2	11	8
TGATTGATGTTCCGCG	ref_126_missing	76	113	74	75	118	72	104	68	126	68
GGATCGTATCCCTGTT	ref_126_missing	0	0	0	0	0	0	0	0	0	0
CCTAGAGTTAACTCTT	alt_5977_new	4	12	7	6	3	10	11	8	13	9
TTCCCTAACGCCGCCC	alt_5977_new	24	39	28	21	37	25	37	21	48	23
GTTACACGTCTTATTC	alt_5977_new	81	129	77	52	161	55	158	61	164	61
CGGTTGATGATTACTC	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TTGCCCGCGCAAGGAC	alt_5977_new	2	8	2	5	8	6	5	1	9	5
GGATTTTCAGCCTTGT	alt_5977_new	10	24	13	14	26	9	23	3	20	12
AAATATTGCTCTGGGA	alt_5977_new	1	4	0	0	0	1	0	1	3	1
CTTGCACGTGTACTGT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CGGACGATTTATCCAT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TCTCGTCCACTAGCTG	alt_5977_new	8	10	9	6	10	3	9	6	4	7
CCTGTGTCGTCTTGGC	alt_5977_new	41	88	63	28	71	40	88	33	107	32
TGGCGCACTCACTACG	alt_5977_new	0	0	0	0	0	0	0	0	0	0
AGAACACTATGCTGTT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TGTTACATGCTTATCT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TTCAGGGTTTCACATA	alt_5977_new	10	8	8	6	18	4	14	8	9	4
CTGGGAAGGCTTCTGT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TTCGAGGGCAATGCCC	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CTGCGGTGTATCCGAA	alt_5977_new	53	81	74	52	81	37	77	44	87	31
TTGTGGCCCTTCCCAA	alt_5977_new	17	56	36	33	62	45	79	29	66	27
CGCTAATGGTCAATCG	alt_5977_new	46	54	41	23	64	28	68	32	66	21
GTACTGTGATTACCGG	alt_5977_new	1	0	0	0	1	1	1	0	0	0
TGTGGTCCGGAACACA	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CTTGAGGCGGCGTACC	alt_5977_new	3	9	6	6	7	7	6	3	10	6
ACTGACCGCTCCCCCT	alt_5977_new	20	35	12	16	28	10	29	16	41	11
TGCACCCCTGTTTTGT	alt_5977_new	2	5	1	2	4	0	7	2	6	3
TATCCTCCGTTTCTGG	alt_5977_new	25	44	43	28	49	27	56	17	41	29
AATACAAGGTTACGCG	alt_5977_new	3	7	7	7	16	9	10	1	10	4
CGTTTATCGAACGGGG	alt_5977_new	17	27	15	12	32	11	32	15	29	11
AATTAGTGAAGTCCGG	alt_5977_new	7	9	3	3	7	4	3	5	9	7
CCCGTACCCTTGTTAC	alt_5977_new	1	7	2	0	0	2	6	3	1	1
TCCTACCCCTTCCCCT	alt_5977_new	21	32	22	3	20	10	25	15	29	16
TTAAAGTCAATGACAG	alt_5977_new	33	47	21	20	53	34	57	24	50	17
CGATCGTTACCCCTTT	alt_5977_new	7	17	23	14	9	16	23	16	30	13
CGTGTCACCATGCACC	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CTCGGCTTGACGTAGT	alt_5977_new	37	42	33	41	48	25	52	36	37	31
TGTTAGATTCCCAATA	alt_5977_new	41	112	62	55	97	55	107	40	100	41
GTCTGTTTTGAACACA	alt_5977_new	18	31	22	28	46	12	45	18	36	19
TTTCTTAAACTGCGGG	alt_5977_new	0	0	0	0	0	0	0	0	0	0
ACTGGTGAACGATTTT	alt_5977_new	29	46	26	19	44	20	52	31	50	19
TATTCGAACACAGCGT	alt_5977_new	31	34	34	33	54	37	56	28	44	35
CCCCGCTCCGCAGCCC	alt_5977_new	34	35	34	24	45	27	48	27	49	32
CCGAAGGGCTCACGGG	alt_5977_new	45	56	71	37	81	33	81	33	85	38
CTTGGCTTGACGTAGT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TCGTGTTCGGCCGCTT	alt_5977_new	53	43	47	39	62	32	75	31	55	49
TCACTTTTCGGATACT	alt_5977_new	55	60	39	49	92	41	61	47	73	39
TACGAGTGTATATTGA	alt_5977_new	2	6	2	1	4	1	12	3	7	3
CGTTACGTTTGCAACG	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CCCTTCCTATCGTCAG	alt_5977_new	5	10	13	11	17	8	14	7	15	10
ACAAAGAACACCGACA	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CGTTCCCTTCGTACGC	alt_5977_new	1	2	4	5	2	2	4	1	9	0
CGAATCCAACTCCGTG	alt_5977_new	0	1	0	0	0	0	0	0	0	0
GTTATCGACTGCTATT	alt_5977_new	20	40	15	16	40	11	46	26	49	18
GATTTCGTCTGGCTGT	alt_5977_new	9	17	23	12	16	13	27	8	30	20
CGAGTGTTAATTGCTC	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CCTCTTTTGAATCCAT	alt_5977_new	4	13	12	8	21	8	19	7	17	9
AAGACGTGACTCTAGT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
GTGGTTCGTAAGCGAC	alt_5977_new	9	45	17	24	42	31	59	27	63	23
CCGCATGTGCTACGTC	alt_5977_new	0	0	0	0	0	0	0	0	0	0
GGAAGGATTACGTCAA	alt_5977_new	38	54	38	43	36	56	68	43	51	43
CACTCGTTTTACCATC	alt_5977_new	25	43	18	21	56	14	50	16	34	23
ATGGATTGAGCGCTAC	alt_5977_new	23	55	20	23	45	27	42	18	48	21
CTTCTCGCCATCGCGT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CTGATTCGGCCTATAT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
AAAAATCGATTTTGCA	alt_5977_new	19	17	15	15	23	13	31	20	29	11
TATGCGTGGCCCTTTG	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TCCCGAATGTTCCCGT	alt_5977_new	17	26	19	17	34	19	28	10	26	18
GTCATGAATGTGGTTT	alt_5977_new	2	2	1	0	3	0	3	0	4	0
ATATTTTACCAGCGAG	alt_5977_new	0	0	6	2	0	1	2	0	0	0
CAATAGTCCTCAGATT	alt_5977_new	0	0	0	0	0	0	0	0	0	0
TGTAAGGGTAATTTAA	alt_5977_new	17	17	20	18	34	18	35	19	33	7
ATGCCTATTGCTCGTT	alt_5977_new	21	22	21	18	18	13	22	25	32	13
GTTCGGGGGGCGCATG	alt_5977_new	0	0	0	0	0	0	0	0	0	0
CCGGTATAAATTCACT	alt_5977_new	16	28	12	11	13	8	19	16	21	11
ATGCCGCTGGGATGAT	alt_5977_new	22	29	30	16	37	14	28	11	37	14
GCTCCTCATCTTCTAC	alt_5977_new	0	0	0	0	0	0	0	0	0	0
GGTTATTTGCACAGGT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
AGTGTCGGGAGAAACT	ref_358_negative	2	9	3	6	5	4	6	3	8	4
GCCCTTGTAGACCCCT	ref_358_negative	33	60	43	41	61	25	47	35	55	40
TATTTTTAACCACAGC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TGTAATGCAGTACAAT	ref_358_negative	4	3	4	4	14	2	8	8	6	2
ATTAGTCCGGGCCTAT	ref_358_negative	63	100	79	69	124	58	119	51	114	49
ACACTGATGAACCCAG	ref_358_negative	19	37	29	20	50	31	35	24	48	15
TATAAGCCCGTAGGTC	ref_358_negative	6	10	7	5	5	3	3	2	11	5
CCTCGCACCGCCTTAT	ref_358_negative	10	26	15	17	17	15	22	6	28	7
GAAACGCATTCCTTTT	ref_358_negative	48	75	58	54	103	39	64	42	70	46
TCTGGGAACTTGTGAC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ATGTTGTGCTCATATT	ref_358_negative	20	31	19	19	25	10	26	18	29	15
AGAGCTTTCGTTGTTC	ref_358_negative	11	10	10	3	8	2	12	7	11	9
TTCAAATTATAGTGCA	ref_358_negative	13	33	17	14	20	16	23	20	44	11
AGACGTGGCCTTGGCG	ref_358_negative	2	4	3	1	7	3	5	2	4	6
GTTTGCTTTGATCCAT	ref_358_negative	13	27	22	17	21	18	34	15	22	10
CAGCGTGATAGAAATT	ref_358_negative	8	14	10	7	11	14	14	9	8	4
GGTCATTGAGCACGCG	ref_358_negative	17	29	23	21	32	19	31	18	51	18
ATCTGCTTCATGTACA	ref_358_negative	10	17	8	7	13	9	18	1	14	6
CGGATTGAGACATCGA	ref_358_negative	35	49	40	35	48	37	49	38	71	26
AAGAGTGAGAAAGGGT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ATCATTATTGATTGGT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TGCCCATGGGAAAATG	ref_358_negative	1	2	1	2	3	0	2	3	2	1
GACGCGACTACCTATA	ref_358_negative	6	15	8	5	14	5	15	10	5	3
AGGAGGCTAGCACAGT	ref_358_negative	20	45	17	40	47	21	34	17	47	22
GGCTTAACGATCCTGG	ref_358_negative	11	22	18	15	19	11	19	13	24	12
ATCTGCTAGCCTATTG	ref_358_negative	4	18	6	9	17	10	11	4	10	3
AATGTCGATGTCTGAA	ref_358_negative	1	5	8	4	3	2	10	2	7	1
GCTTTTTGGGCCAAGC	ref_358_negative	53	85	60	58	81	49	85	56	104	55
AGCATTGCTTTTCTAT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TTCGCTAAGGGCCGGA	ref_358_negative	19	17	28	17	23	16	17	22	29	27
ATGTGTGGCATAGGCC	ref_358_negative	7	5	7	6	12	6	4	2	7	2
CCCGCAGTTCCCTGTC	ref_358_negative	22	60	18	24	26	17	38	25	47	21
GTATAGGGTCACTTTC	ref_358_negative	89	145	118	91	158	78	127	77	152	77
ACTCTTGACACCGTTT	ref_358_negative	13	37	14	13	24	14	29	15	32	9
CTGTGAATGGCGTACG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TAAGTGGATAGCTTTT	ref_358_negative	20	20	18	14	14	7	32	10	31	5
ATTCGTGGCCGGGAAC	ref_358_negative	13	23	22	16	34	15	30	13	39	19
GTCTCGTTTGTTACAG	ref_358_negative	35	48	46	38	71	59	78	40	87	37
CTGAATTATACAATCG	ref_358_negative	3	2	2	2	3	1	1	0	2	1
AATTAATCGCGCGAGC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CTTTGATCTTGCGTTG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ATTTTCACTTACGATG	ref_358_negative	26	33	24	35	38	29	40	27	50	17
TGTTGCCGGCTAAGAT	ref_358_negative	19	38	27	15	15	21	27	20	38	28
GAACATCAACCCACAG	ref_358_negative	4	12	7	6	7	4	10	5	12	8
GATGCGGCTGTCCCGT	ref_358_negative	19	29	20	16	57	23	25	15	34	21
CGACGTTATCTCGTTT	ref_358_negative	45	104	62	57	96	66	88	42	114	52
GAGAGTATGTTGGTAT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TCTTCTACTAGGATGG	ref_358_negative	20	20	13	14	31	23	32	30	29	22
CCCGTTTACTGCCCAA	ref_358_negative	98	175	119	87	138	92	168	87	164	101
ATTGAACGCTAATGTG	ref_358_negative	61	75	51	36	77	39	77	38	96	48
CCCAGGCTCTTACATT	ref_358_negative	4	7	4	1	9	3	13	5	13	4
CGTGCCGATCCATAGA	ref_358_negative	0	10	6	4	6	2	8	2	13	2
ATGTGCAGTTAGCCTT	ref_358_negative	43	45	58	38	53	26	43	35	71	27
AGCTTGGACAGGTACA	ref_358_negative	7	21	5	10	28	6	30	11	32	9
GTGCTTGTCTTCGGCC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CTTGGTGGTACAAGTG	ref_358_negative	0	2	5	0	0	0	7	1	2	1
CCTCGTTTAGACCGCG	ref_358_negative	98	202	123	105	172	103	222	94	236	102
CTATATGTAGGAAAGT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CGTTTTTTAACCCGAT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
AAGGCTTGTCAGAACC	ref_358_negative	10	31	30	15	43	34	43	20	31	20
TGCCACAGGGGGTGAG	ref_358_negative	36	90	48	46	86	39	90	32	102	39
GTCGTTTCACCTTAAA	ref_358_negative	33	39	38	38	45	25	50	34	44	25
CCTCTGACCCTAACGG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
GATCTTCTCTCACGTT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ACTCATTGGGTTTCGT	ref_358_negative	31	65	31	26	78	22	73	34	63	17
AAGTAGCTCCCTGTTT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
GTTACGTGCCGAATCC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ATCGCAACCGTGAGCT	ref_358_negative	13	33	19	21	31	15	22	12	38	30
CTGCCATGACATAAGG	ref_358_negative	19	77	29	16	69	21	75	16	74	16
AGATACAATGGTGGGG	ref_358_negative	3	5	1	1	4	4	3	4	10	10
CCGCCTATGGTTTCCT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CTTGCTTTTAGCTATA	ref_358_negative	7	12	15	13	9	17	5	9	18	7
GGAGACTAGCTGATCA	ref_358_negative	17	24	19	18	29	17	25	12	22	15
AGGTATCATCCAGAGT	ref_358_negative	9	8	6	5	5	8	9	3	12	5
GTCTTGCGTCACACCT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TAGGCGTTCGCGGTTG	ref_358_negative	18	17	13	23	18	17	26	9	24	13
TATGCTTAGTCTATTA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TCAAATTCAAGGAGTC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ACGTGAGATATACACA	ref_358_negative	9	19	32	29	30	19	32	26	31	18
TGCACTCTGGGTCTGT	ref_358_negative	7	16	6	6	7	9	19	6	8	3
TGATTGTCTCGGTATC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CCGTGGAGGATTTATG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TTTTAGTAGAATATTT	ref_358_negative	21	29	23	20	34	12	25	15	41	21
CCTCGTCTGGGTATGG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TAAGGTGGGGGCGCGG	ref_358_negative	24	36	17	26	28	12	36	15	48	16
GTGATATCATGCATGG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
GATCGAGCCGAACAGA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ATGTCGCCAGGGCTTG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TGCGGGTGTGGCTTTT	ref_358_negative	8	6	8	6	5	5	11	4	3	4
GCCATTGCTTCGTCGT	ref_358_negative	28	51	43	43	62	26	52	27	43	18
CCTGGAATATCGAATT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TTTTTGATTTATTTAA	ref_358_negative	23	46	28	35	52	29	43	22	33	31
TATACTAGGTAGTCGT	ref_358_negative	7	12	7	3	3	13	8	2	13	2
TATAGGTCTGACTATC	ref_358_negative	1	5	0	3	6	1	3	3	3	0
TTGCAGGCTCGTCTAG	ref_358_negative	7	10	8	13	11	8	16	10	10	10
TGCTTTCCGCGACTGT	ref_358_negative	13	9	11	15	22	17	19	10	24	2
GTTTAACTTTGCTAAT	ref_358_negative	0	8	6	3	0	0	3	5	1	0
CCCTTTGAAGTAGAGC	ref_358_negative	20	27	24	20	22	18	30	27	26	15
GAGTGCGACTATGGCG	ref_358_negative	14	17	18	12	31	9	25	15	16	8
TCATGTCTTATTTCAA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
AATGGCGGACTGTTTG	ref_358_negative	53	103	102	81	90	89	123	71	98	73
GTGTAGTCCTTCGGTT	ref_358_negative	52	88	74	57	124	66	106	66	90	45
CGCTCAGTCCCTTATC	ref_358_negative	11	26	24	29	31	16	38	17	38	15
GTTGGGGGGTTATGTT	ref_358_negative	7	36	8	12	29	13	27	5	30	16
CGTCCTGTTACCGTCC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TCTTGTGTCCTTGCTT	ref_358_negative	7	8	3	9	7	3	7	5	6	2
CATGCCCTGTCTCGCC	ref_358_negative	12	34	12	30	18	22	36	17	33	19
TTCACAGATCGGGCTG	ref_358_negative	29	61	47	42	66	30	61	34	53	30
TTCGGGGTGAGCCCGT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TCTTCGACTGAGGAGA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TTCGGCTAGCAATTGT	ref_358_negative	3	10	2	2	14	5	9	4	5	2
TATTGCCATCTATTCG	ref_358_negative	23	43	31	24	40	25	54	29	40	19
CCCTTTATAGTCTAAA	ref_358_negative	31	44	34	24	57	19	51	23	51	22
GTTGCCGCTGTCACGA	ref_358_negative	62	93	92	78	105	78	104	71	112	62
ATAGAAGGATCATTCG	ref_358_negative	11	33	31	22	24	17	43	28	45	23
CATTGATGTCAACTAC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ACTGATCAGAGCCCGT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CGTATAATCCACGATG	ref_358_negative	9	23	21	10	18	19	28	10	45	12
GTGGCATGCGTCCATG	ref_358_negative	8	14	11	11	17	10	16	11	19	5
CGATTCTATTTGGTGT	ref_358_negative	78	111	76	65	111	72	101	68	140	48
GGGTTGCTCGGGAATA	ref_358_negative	20	29	22	16	23	10	22	12	33	17
TAGTGGGCTGCTAGGA	ref_358_negative	30	50	25	24	40	21	64	28	61	29
GTAGCGGTGGTACAGC	ref_358_negative	39	68	48	38	78	43	81	45	83	35
GCAAATTCCAACGTCT	ref_358_negative	0	0	0	0	0	0	0	0	0	0
GGGGTCTTCTGCGCTT	ref_358_negative	9	42	16	19	41	5	59	16	45	14
GTGCCTTTGAGTTCCA	ref_358_negative	0	0	0	0	0	0	0	0	0	0
CTCCTTATTCATGGTC	ref_358_negative	59	96	63	66	95	52	91	35	104	50
TGTTATGTATAGAGGT	ref_358_negative	39	81	44	47	61	44	82	31	82	40
GTAGGTTCCTTCACGC	ref_358_negative	13	13	26	14	22	13	24	15	32	15
GCGTCGCGTACATATA	ref_358_negative	30	28	24	29	48	25	36	25	49	14
TGTTAAACTAGGCGAA	ref_358_negative	27	14	26	24	26	21	24	25	29	19
TAGAGAACCGGGTGTG	ref_358_negative	12	20	10	11	17	5	20	2	14	10
CCGTGTTACCCACCGG	ref_358_negative	7	30	8	3	32	2	43	8	38	8
CGCGCGGTCGTAATGG	ref_358_negative	53	74	65	48	70	72	64	56	76	45
GCCCAATAAATCTGGC	ref_358_negative	55	136	84	56	107	70	117	57	148	55
CACGCTCGGCTCTTTA	ref_358_negative	22	40	33	27	39	18	33	28	39	19
CACCTGAATACCTAGA	ref_358_negative	41	76	44	51	77	47	79	43	85	53
CTATGCGTGGGTACAA	ref_358_negative	7	14	18	8	14	9	17	11	27	9
ACCGGATCGCTGGGGC	ref_358_negative	20	69	19	19	67	16	75	17	62	17
CGCGACTATATTCGGT	ref_358_negative	16	24	11	12	23	12	27	15	26	22
TGAGCGACCGCTCAGT	ref_358_negative	42	66	37	38	56	41	57	24	88	31
AAACTCATTGTACTAC	ref_358_negative	19	30	36	19	50	26	34	21	41	31
TGTGATATATTTGTAG	ref_358_negative	22	38	33	29	41	21	43	21	49	15
TTTGATTCTAAGCTGT	ref_358_negative	6	10	7	3	11	2	10	13	17	3
GAAATTTTCTTAGGCC	ref_358_negative	0	9	11	4	14	10	9	9	6	6
TAGATTGTCACAGCTT	ref_358_negative	11	24	13	9	21	11	31	7	17	12
TGTCGAATAACACCGT	ref_358_negative	1	3	1	2	2	0	5	0	9	5
GTTTTATTGTGGTTCC	ref_358_negative	14	19	18	11	13	8	29	17	20	20
TTCCAAACTACCGCTC	ref_358_negative	18	29	24	25	27	14	22	15	31	8
GTTGCGCTTGACAGTC	ref_358_negative	0	0	0	0	0	0	0	0	0	0
ACATGTGTGCTGTTTG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TCGTCAACACGCACCC	ref_358_negative	9	23	9	8	23	12	23	9	31	7
TGCTCGAGTTGCTCGG	ref_358_negative	1	7	6	4	5	3	4	1	8	1
CCGTTGGGCGATCCGT	ref_358_negative	7	31	10	7	36	7	29	9	38	10
TGAACTCGTGACCCCT	ref_358_negative	6	15	9	14	14	7	13	16	9	15
GGATTCTGCTCGAGTT	ref_358_negative	24	46	28	33	49	29	43	26	63	29
TGACCCCTGCATGTAA	ref_358_negative	14	24	19	8	22	15	22	14	22	14
CAATACATTTGTGGCC	ref_358_negative	44	58	46	39	65	36	88	42	70	47
GACTTTAGTTTTAATG	ref_358_negative	34	47	27	33	48	20	47	24	46	30
GTATCACTTCTTTGTC	ref_358_negative	9	5	11	3	12	10	7	4	8	4
TTAGTTCCCGGTATTG	ref_358_negative	4	10	4	5	8	8	12	5	5	1
CTATCTTCTTATTTAA	ref_358_negative	61	96	89	71	123	66	101	63	106	73
TACCTTTCGCAATAGT	ref_358_negative	24	51	30	17	53	23	38	27	43	21
CCTTTAGTCTTTCACG	ref_358_negative	0	0	0	0	0	0	0	0	0	0
TGCTTGCTTTGATCAT	ref_358_negative	142	162	145	110	206	134	168	116	186	135
TTCGTTCCATGAGTTT	alt_5268_reverse	3	5	4	10	11	3	6	2	9	5
TATCGATATTTTGATT	alt_5268_reverse	14	19	31	11	18	14	11	19	27	20
GTGTTTTCCCGCTGTT	alt_5268_reverse	53	89	63	52	87	49	63	47	83	38
AAGATGACATCATCGC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTGCCGCGGTCTA	alt_5268_reverse	55	93	65	71	76	60	97	49	100	57
GTCGTGCCCTGATGTA	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTGCAATGGTGCCCTA	alt_5268_reverse	21	37	28	28	37	19	52	21	45	17
ACGGGTGGTCAGGTGT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
ACATTAGAATGTACTT	alt_5268_reverse	11	20	23	13	20	5	24	9	17	13
AACAAGGTAGCCGGGC	alt_5268_reverse	23	45	38	26	20	21	36	24	37	24
ATCGATTCTCAAGTAC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTTTTTTCTATTA	alt_5268_reverse	104	126	153	102	122	109	161	96	142	97
TATTTCCCACTTTGTC	alt_5268_reverse	67	107	119	85	129	76	122	78	140	63
GGTACCCTGAAGCTTG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
ACATCCCAGTCATTTC	alt_5268_reverse	14	17	12	13	26	8	13	16	28	9
TAAATTACCAATACGC	alt_5268_reverse	54	75	52	38	76	48	83	43	69	41
CGCTGCGCTGATGGTC	alt_5268_reverse	18	24	26	9	20	10	36	13	18	6
GTAGCCATTTCTGAGG	alt_5268_reverse	83	151	131	104	100	99	145	78	165	74
TCGGGTTTATTTCACT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
CATGCGAAACTCGTAT	alt_5268_reverse	61	60	71	39	71	44	84	62	78	62
CCCCGCGTACCGCAGT	alt_5268_reverse	24	55	31	33	55	18	58	11	72	15
CCAGGATCGGATCTAT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GCGATCCCAGGCAGTG	alt_5268_reverse	31	31	29	15	43	20	39	28	32	22
TGAACTTTTTAGTATA	alt_5268_reverse	1	3	1	1	0	0	2	2	1	2
CGAGAGATGCGGACCG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTCGCTAACTCA	alt_5268_reverse	20	46	50	27	39	41	50	26	45	28
TATGGATGTCAATCTG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
CGCATGTAGAACCGGT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTCCAAGTTCGGGGTG	alt_5268_reverse	22	15	20	7	18	6	15	8	11	10
CGCGCGTCATGAGTTT	alt_5268_reverse	32	39	22	32	48	19	43	15	31	23
GCGCGTTATAGTAACC	alt_5268_reverse	33	36	37	25	37	22	43	29	44	18
TTAACGAACTTCCCAC	alt_5268_reverse	51	79	57	48	61	37	63	44	55	36
GAGCCATTAGCTTGGA	alt_5268_reverse	17	19	18	10	18	15	32	17	22	10
CTTCTAAGGCCGCTTC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTAAACTTTCCCG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
AACCAGAGCCAGTTCA	alt_5268_reverse	20	76	31	22	43	37	50	31	50	35
TTGCCTTTACGACAGT	alt_5268_reverse	53	74	51	50	78	54	80	41	93	46
TTTTTGTTTAGCCTAC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
AATGGTCCCACGAAAG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTCGCGTTATGG	alt_5268_reverse	31	56	31	31	50	42	49	22	51	23
TACCATAACCTCTCTT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGTGTGGAGGTAT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTCGTGCAGAAT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TAATACCGGAAAGGAT	alt_5268_reverse	8	11	5	11	13	7	11	5	9	10
CCATCGGTCATTCTAT	alt_5268_reverse	8	25	19	14	23	17	35	11	20	12
CCGCATGGATTGATAC	alt_5268_reverse	2	11	2	6	3	3	12	4	9	0
CTGGCTACGTGGTCTG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAATTTTAGCCCT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
AGCACTGGACACGCTC	alt_5268_reverse	2	7	2	2	3	0	3	1	1	1
CCGTATTGTAATGTAG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCTGGTGGATTTC	alt_5268_reverse	3	7	9	6	11	7	16	4	6	6
GGCACGATGATTGTCT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
CGACCCTGTTTTTTCG	alt_5268_reverse	12	16	5	7	20	3	11	7	9	1
TTTGCCCGTGGAATCC	alt_5268_reverse	18	47	27	33	41	16	38	28	36	29
ATTGATGACTGAGTGT	alt_5268_reverse	19	26	14	24	22	19	33	19	13	10
GGGTTGCGGTCGATGC	alt_5268_reverse	98	127	102	111	147	103	151	96	179	107
GGATTCTAACCCGAAA	alt_5268_reverse	17	11	5	10	12	7	5	8	10	6
GCATCATAGCATTACG	alt_5268_reverse	95	152	109	86	153	121	157	98	162	93
TTGTATGGATGGTCTT	alt_5268_reverse	15	12	11	14	17	12	28	11	16	4
ATTCCACACCGAAAAA	alt_5268_reverse	116	122	147	96	152	93	148	89	138	86
CGCGGTGCATATATTC	alt_5268_reverse	7	7	9	4	4	7	7	4	16	3
AAATTGATGTTCTTAT	alt_5268_reverse	258	347	342	268	372	282	356	253	353	233
CGCCCCGGCTTAGTCA	alt_5268_reverse	30	53	32	36	41	29	44	26	39	23
CCAGGGGCAACTCCTC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGTATTCGTAGTGGGC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCTCTAAATAGAA	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGGTAGGTGAGTG	alt_5268_reverse	40	38	34	34	36	36	44	40	49	26
TCGATTATCCGTCGTA	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GGTATCAGCGTGTGAC	alt_5268_reverse	40	79	43	43	62	54	53	27	78	45
ACTCCCAGCCACGGAC	alt_5268_reverse	62	125	109	83	155	71	172	77	164	51
CGGGTGGCCATACATA	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
CAACACGTACACGGGT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
AATGCCCTCCAGATAG	alt_5268_reverse	26	38	34	25	38	20	21	29	30	26
CAGATCTCAAGCACAG	alt_5268_reverse	4	5	12	3	5	5	10	6	7	3
CCGAAAGCAAGTGGTA	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
CGCTTTTAAGCGTATT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
ACAAAACGGCCTTTTC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCTTTAGTCTCTT	alt_5268_reverse	27	52	44	31	40	26	59	17	54	38
TATTGCCAGTAGCCGA	alt_5268_reverse	47	63	70	52	70	42	82	39	76	43
GGAGAAATTTGTCGTT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TGCACGTACCTCCGCG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GTAACGGTGTCTGCCG	alt_5268_reverse	32	54	43	50	60	38	51	32	41	35
TGACACTGGTCCTATC	alt_5268_reverse	5	7	7	4	8	3	4	2	13	3
GAACCCAGTTTTCTTG	alt_5268_reverse	2	20	8	10	17	7	11	10	13	3
GTAGCATGCAACTTTC	alt_5268_reverse	24	21	18	14	15	11	27	15	24	16
TATCGAATTCGGGGTG	alt_5268_reverse	1	2	2	0	1	3	1	1	4	0
TCATCACTGGGGCTCC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GGCTAGAGACAGAGTT	alt_5268_reverse	8	14	9	11	16	9	9	5	10	13
TTACTCTTTGGGAAGT	alt_5268_reverse	24	20	12	13	24	14	24	17	25	17
TTTAGGGGGAGCCCCC	alt_5268_reverse	26	19	20	26	27	18	35	14	30	21
GAGATGAAATCTGTCA	alt_5268_reverse	18	36	25	27	25	16	43	24	48	19
TATGATCTACGCTGGT	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCACCCCGCGCGT	alt_5268_reverse	15	14	16	8	22	9	27	4	17	8
CCGGTGCTAATTACTC	alt_5268_reverse	37	103	36	45	141	33	117	37	134	26
TTGCTTGGCTGCCAGT	alt_5268_reverse	21	33	38	15	22	17	29	22	31	18
CGATATATTTTGCACC	alt_5268_reverse	3	28	8	6	14	9	7	7	18	10
TGCAGGACGTCGTATT	alt_5268_reverse	5	11	15	6	9	10	18	10	22	5
GTTTGGGATAAGGGTA	alt_5268_reverse	68	97	86	73	122	63	117	61	142	59
CTGGGCTTAGATCTGG	alt_5268_reverse	16	27	11	13	31	16	33	9	26	11
GGAGCCTATATACCAA	alt_5268_reverse	43	51	49	39	63	45	49	39	74	30
ATTGTTAATCTAGTGG	alt_5268_reverse	3	0	7	1	9	1	9	6	7	2
TCGTCTTAAAGGAACC	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGGTGTTTCTCTG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GCCAATCTCGTTACGC	alt_5268_reverse	33	48	30	30	61	24	44	30	54	20
AGGCATTTAAGTCTCT	alt_5268_reverse	21	42	20	29	40	24	33	24	40	18
TGGACCGCAGGTTGGC	alt_5268_reverse	172	224	214	185	282	188	255	191	322	153
CGTTCGTACCAGGCCG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCTCACACAAGCA	alt_5268_reverse	4	7	2	4	6	3	6	2	6	3
AAGGATCGCGCACCTG	alt_5268_reverse	0	0	0	0	0	0	0	0	0	0
GCGTCACGTCTCCTTT	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
CGCATTTTTTAATACT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TAGGAACGGAATTGCG	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
CATATGTTAGCCATTT	alt_3580_missing	3	17	9	7	12	5	14	7	15	11
GCGCTTCCGGCTGCGC	ref_3580_missing	44	56	45	46	62	38	57	48	72	50
CGAGACTCTCCTGCTG	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
GAGTATACCTGGCTAA	alt_3580_missing	20	32	34	20	39	21	38	15	33	23
TTTTTGTTTGTTTGTT	alt_3580_missing	51	64	54	54	65	66	53	24	62	34
CGGTACAGGGTATATA	alt_3580_missing	29	33	44	31	43	28	47	30	44	27
TAGGCTTTTGTTCTTT	alt_3580_missing	56	63	75	53	83	59	66	42	72	56
GTAAAAGGCTCCCTGC	alt_3580_missing	12	15	14	13	16	9	23	13	21	12
TTTCCAACTGTTGCTG	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TACCGGACCTTTATCT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TAATAAATCTCGTTGG	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TATATGTTGTTTGCTA	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TTTTGATAGCGTGTTT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
CTGTTAACTTGCTAAT	alt_3580_missing	56	94	64	44	85	44	80	56	84	48
CAACAGGTCTTCGTAA	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TTTTTCCGTTAGGATT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
CAACCGTTCCGGATGA	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
ATTTCCCGTTCTAGTG	alt_3580_missing	5	14	12	6	14	8	14	8	8	6
ACTGGGTATTCGACGA	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
AACTCGAGGTAGTGAC	alt_3580_missing	36	45	42	35	51	36	52	38	62	40
TGGATCAAGGGTTCGA	ref_3580_missing	53	56	49	58	72	41	65	51	66	35
ACCTTAGTTCCACAGA	alt_3580_missing	67	75	64	61	81	56	84	56	91	57
ATGTTTACATTCTCCT	ref_3580_missing	102	102	87	60	99	77	97	79	98	64
CTACTCGTTAATATAT	alt_3580_missing	27	53	39	24	43	33	31	35	42	25
GTTTTTAGTAGTTCAG	alt_3580_missing	26	31	28	18	22	29	36	29	40	18
AGACATCGCAAGACGT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
CTCGGTTCCGCCCCGC	alt_3580_missing	6	6	2	4	10	1	10	3	16	6
GATCTAGGCAACGCGC	alt_3580_missing	15	16	13	20	20	18	22	16	29	9
CCTGCGACGGGCGCCA	alt_3580_missing	27	33	36	23	35	19	33	25	45	20
GCTGGGGTTCTTTTAG	alt_3580_missing	20	22	27	16	31	13	18	13	42	23
TACTCACATTTCCCCT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TGGGTTCTGTGTAACC	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
CGTTATACAAAGCTTC	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
GTTGATCGAGTATTAT	alt_3580_missing	64	78	91	85	92	74	94	67	91	71
TAGCCATGACTAATCT	alt_3580_missing	14	16	9	19	15	11	21	5	14	10
CCGGTGCACCGGGTGT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
AATCTTATCAATCTCC	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TTGATATTCTCGCATT	alt_3580_missing	39	67	60	39	46	45	66	32	60	40
GTGTTATTTAGTGACG	alt_3580_missing	7	11	13	12	11	7	16	4	14	13
TTGTCACGCGGGACCG	alt_3580_missing	8	7	8	6	9	2	7	5	5	5
AATAGAGTTCCAGGCC	alt_3580_missing	1	0	1	1	5	1	0	0	3	0
CCCGCCGTGCTCGCGA	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
TCCATTACCTGCTGTG	alt_3580_missing	14	30	21	17	28	13	26	5	19	9
AATCGCAAGGTCTAAG	alt_3580_missing	9	9	8	4	4	7	6	6	5	4
ATGGAAGAGGTGTATT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
GCAATTATAATCGTCT	alt_3580_missing	52	45	69	46	41	38	58	27	65	33
TGTACTACGCTACATA	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
GGAACACTGGGACGGC	alt_3580_missing	95	139	133	104	166	97	159	123	153	105
GAAAAAGGGGAAGGTT	alt_3580_missing	12	17	17	27	34	15	27	23	30	14
ATGCCCTCTAACGAGG	alt_3580_missing	11	17	11	13	10	12	7	6	22	8
GAGCTAGCTTCATATT	alt_3580_missing	13	16	18	13	30	18	17	14	17	19
TAGGGTTTTCTACCCT	alt_3580_missing	0	0	0	0	0	0	0	0	0	0
GCCGCCCAGGAAATCG	alt_3580_missing	9	19	16	11	19	12	19	22	12	14
ATAGCTAGTCATGCAC	alt_3580_missing	6	17	3	2	9	4	8	6	12	10
ATAGTCATTATTGGCA	alt_3580_missing	2	5	7	4	11	9	8	5	10	3
CAATTGTATGCAATTG	ref_5614_new	3	6	3	5	9	7	14	2	16	3
CCTATATAAGCTCCCC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TGCACACATGTAAAGT	ref_5614_new	7	13	12	6	13	8	7	5	3	7
GGGAAGCGTGAGTGCA	ref_5614_new	0	0	0	0	0	0	0	0	0	0
ATACGGAGATATGACC	ref_5614_new	4	11	6	5	6	6	8	5	5	1
TGGTGGGTATTGTTTG	ref_5614_new	0	0	0	0	0	0	0	0	0	0
ACGTGTTTAGCTACTC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
GTTCGATTCAAGCCCG	ref_5614_new	53	105	90	88	104	59	123	66	117	72
ACCAACCTAGGTCCCC	ref_5614_new	3	27	11	13	22	7	35	6	34	10
AAATCCTCTAGTGGTA	ref_5614_new	10	10	5	6	18	9	10	7	11	4
CCTAGAAAAATTTGGT	ref_5614_new	26	45	25	13	30	16	36	16	43	15
AATGCGGTTGTTCTCT	ref_5614_new	73	130	74	79	125	77	139	64	132	77
TGGTCTTTATGTGTGT	ref_5614_new	10	24	13	16	26	15	18	7	30	11
CTGAGTCACGCACATC	ref_5614_new	16	18	18	19	27	25	29	8	37	27
GTGATGTAGCCGCGCC	ref_5614_new	4	9	6	0	3	4	4	7	6	3
TATTGGATAGAGTCTC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
CTCTATGATCTGTGTT	ref_5614_new	2	6	2	3	14	3	6	4	9	5
AAAGCTGACTCATAGT	ref_5614_new	4	15	8	9	12	11	8	7	12	4
GCACTTACATAGGAGT	ref_5614_new	25	27	28	21	41	12	46	15	49	12
CCAGTTTTATCCGAAG	ref_5614_new	12	46	14	14	45	21	44	12	37	16
GTCAGCCTTTAGGGAC	ref_5614_new	2	5	2	3	6	1	1	1	3	1
CTATCTGCTTAGGTAT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
GGTTTAGGGGACTGCG	ref_5614_new	71	112	85	79	127	88	103	79	152	56
TTTCGCTTTAGAGTTC	ref_5614_new	36	48	45	54	61	46	57	40	57	36
AGCGCCCGCTAGAGGT	ref_5614_new	17	31	31	18	32	22	38	16	35	16
TAAAAGACTTCGGACC	ref_5614_new	7	11	14	12	15	10	8	12	11	4
TTGGTCACAATTCGCT	ref_5614_new	53	82	59	43	87	59	76	32	59	33
TACACTTAAACACGTT	ref_5614_new	9	13	11	7	7	8	11	4	13	5
TAGTTCATTGCATACA	ref_5614_new	0	0	0	0	0	0	0	0	0	0
ATATCTTTCCACCGTT	ref_5614_new	24	39	20	14	30	19	30	16	33	24
TTAGTAAAAGCCATTT	ref_5614_new	17	35	30	22	26	31	27	21	46	17
TTATTAGATTTGTGTT	ref_5614_new	47	50	51	45	74	47	91	47	70	42
CCTCGATCCAGTTGCT	ref_5614_new	8	18	12	16	25	11	20	8	16	11
AGTCATGTACGAGTGA	ref_5614_new	11	26	14	10	27	9	14	12	29	11
CCACAGCCCATTTGTA	ref_5614_new	6	33	5	4	21	2	30	9	30	9
GATACTGGGTGTCTTA	ref_5614_new	14	29	30	14	34	25	37	24	40	23
GGTCATGGGCTCAGAT	ref_5614_new	4	16	12	3	1	6	9	5	10	6
CTTAAACCGTTTTGTA	ref_5614_new	46	70	43	52	69	38	87	41	83	34
ATTTTATCGGAGTGCT	ref_5614_new	17	24	28	23	34	12	16	13	34	21
CAGTGGTTATTCGACA	ref_5614_new	9	17	12	9	23	5	16	15	23	8
AGTTGTGTCGCCATTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
CAACCCGGGTCGGGAA	ref_5614_new	88	157	115	71	160	86	164	103	160	83
TAATTCGGATATAATC	ref_5614_new	26	33	31	19	45	23	48	38	30	14
TGAATACATACCGCTA	ref_5614_new	8	31	16	11	35	7	40	8	33	15
TGCATCTACGGGGGGT	ref_5614_new	40	83	63	60	102	58	87	47	98	48
CGAATAGCTCTCACTG	ref_5614_new	7	8	13	11	19	7	18	7	14	7
AACCAGTGATATCGAA	ref_5614_new	21	28	18	21	28	24	30	24	35	11
TTTAGCTAGCATATTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
ATAACTCGGCTGCAGG	ref_5614_new	16	43	25	15	34	17	26	22	32	24
GCCCTGCGCTCCTGTC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TGTTTGGACTTGGGGA	ref_5614_new	16	29	16	9	23	9	37	12	24	13
TCCTGTGCATCGCGTA	ref_5614_new	10	18	11	15	14	8	19	5	17	8
TATTGAGATGCAGCTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TACACTTCCAGTCTCA	ref_5614_new	14	40	21	18	47	19	49	17	50	17
GCTTTGTATTATGGTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
ACGTATCTTGCGATGA	ref_5614_new	21	62	31	25	37	25	44	25	65	33
CAATGTAGGCGGGTTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
CGGGTGATGTAAAAGT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TGAGGGCTACATGGTT	ref_5614_new	18	11	10	20	8	11	16	13	13	4
GAATCCCCCCGCTCAC	ref_5614_new	7	12	2	2	17	5	10	3	13	1
ACCCCGCAAGTGATCG	ref_5614_new	34	36	41	30	56	34	49	22	41	32
GGGGAAGCCTCCCGGC	ref_5614_new	23	29	21	16	30	18	45	15	31	16
TTCCGAACACCATTAC	ref_5614_new	12	27	20	24	34	15	31	20	27	19
GACACACCATTGCGTC	ref_5614_new	4	34	14	3	28	6	32	6	27	7
ATAAACTTTGGGCGAT	ref_5614_new	12	26	25	21	24	12	25	24	27	16
ACTACAGAATCAGAGC	ref_5614_new	22	40	25	21	46	21	44	18	52	24
CAGCGTCTTAAACCGG	ref_5614_new	55	103	101	55	111	68	104	70	116	59
GAGTGCGTATTCTGCC	ref_5614_new	41	60	33	36	54	30	65	31	44	27
AAATCTTCAACTGCCC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
GGCATCTCTTTCTTGT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
GGCCCGGCTTCGAAGT	ref_5614_new	12	11	8	6	13	8	19	10	15	9
CATGGATTTGTACGTT	ref_5614_new	23	66	42	26	59	42	67	26	56	32
CTACGACTTTTTCTGT	ref_5614_new	17	35	27	23	43	22	36	21	38	13
TTAGAGTAAGGGGTCT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
ATTAACTGCGCATACG	ref_5614_new	39	95	60	51	84	34	117	60	74	59
TCCCCCTCTAAGTAGG	ref_5614_new	43	63	42	46	67	33	65	33	53	26
AACATATCAGAATCAC	ref_5614_new	33	58	41	40	52	26	61	21	52	30
GTTTCTGTCGCGCGTA	ref_5614_new	9	17	9	15	19	10	11	4	15	12
TCCGCATATGCAGTCA	ref_5614_new	96	151	80	82	124	76	164	69	149	48
CACTTACCGTGAAGCA	ref_5614_new	0	0	0	0	0	0	0	0	0	0
CGCTCTCGATCAAGTT	ref_5614_new	85	157	109	90	122	64	152	74	173	71
GTTTGCAAGTTTAGAC	ref_5614_new	28	37	32	28	49	25	53	21	71	21
AGCAAAAGTTCCGACA	ref_5614_new	8	7	9	8	16	2	10	10	14	4
ACCACCTTTTTTGGGT	ref_5614_new	55	79	73	51	128	49	130	57	141	64
TCGAGGGAGCGGGTTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TATTCTGCTTAAATTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
GTTTAGCTGGCCACCA	ref_5614_new	63	75	89	75	70	59	89	72	75	50
GAGGATCTCTACTTTA	ref_5614_new	33	72	46	35	73	38	88	33	72	34
GGTATGATCCAAAATG	ref_5614_new	13	13	11	11	11	14	13	15	15	12
CGGGAGGCGGCGCGTG	ref_5614_new	31	24	17	22	40	23	50	16	34	17
CTCTAATTCCCGGTTT	ref_5614_new	8	6	3	6	7	2	10	2	4	6
TAACCTTAGATTTGTA	ref_5614_new	24	46	24	18	51	22	51	20	51	18
TGACTTTTTATGCTAT	ref_5614_new	47	112	66	65	92	43	111	58	109	64
TTGGCTATATGGTCGC	ref_5614_new	15	25	26	24	26	29	28	24	29	18
TGGCCGAACTCATCCG	ref_5614_new	31	42	40	19	44	27	44	24	45	13
TGTCCAAACTGAGATA	ref_5614_new	7	18	10	7	25	7	22	7	2	6
TTATCGACTCGGTTAA	ref_5614_new	14	47	18	13	40	15	50	16	62	14
AGATATGTGGGCGTTT	ref_5614_new	3	10	11	3	16	19	22	14	22	13
CGCTAAAGGAACTCCT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TGACTCACAGTTATCC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
CCAGCATAGCACATTC	ref_5614_new	47	77	78	79	60	70	73	67	63	52
TCATAGGGTGTGGCGT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
ACGACCTACTTAACGC	ref_5614_new	74	168	98	93	157	80	167	94	217	75
GTCCCGTGATTCGCGC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
CTTTTTGCTAGCCCGA	ref_5614_new	12	21	32	16	29	13	21	13	31	22
TACGTTGGATTGAGCC	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TTTGCCCCGCAAACCA	ref_5614_new	5	17	20	19	31	9	20	13	33	8
TCCTCGGACTGACTCC	ref_5614_new	16	31	24	23	38	24	34	20	30	23
GTGATCCCGACTTCCC	ref_5614_new	27	60	48	33	54	45	79	35	44	24
GTGTACTTAACTCCAC	ref_5614_new	1	5	3	1	7	6	4	4	8	4
GTAGTGCAAGTTGTCT	ref_5614_new	0	4	0	4	1	2	2	0	3	6
CCATATGTGTATGGTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
CACCGGAACGACGCTA	ref_5614_new	104	183	113	72	176	72	192	70	189	87
CTTCATTGGCCTCTGT	ref_5614_new	2	2	1	4	3	1	6	2	6	3
TTGGGAAGTAGAGTGG	ref_5614_new	7	15	8	9	13	13	19	6	14	7
GTCGAACTAGGCCGCA	ref_5614_new	36	54	47	36	58	36	58	25	33	33
TAACTGTGGCTCCCCT	ref_5614_new	3	13	3	7	10	4	18	2	6	2
TTCTCTTCGAGTATAT	ref_5614_new	89	116	78	79	130	77	146	75	149	63
CAGTCAGGATAAGTTA	ref_5614_new	38	84	52	46	69	39	103	46	79	41
TCCTGGTATTGTTGTC	ref_5614_new	51	97	66	45	81	56	83	55	84	39
GTTGGAAATTAGATCT	ref_5614_new	5	14	6	2	7	10	8	4	23	10
CTAGTCGTAGAGTCTT	ref_5614_new	29	73	33	35	68	17	69	32	73	34
CCACTTGTGCACTAAA	ref_5614_new	6	4	4	2	6	1	8	4	6	8
GTTCGTTGGGTGCACG	ref_5614_new	8	15	8	5	13	9	16	6	3	2
AAACGTTCCCCAGTTC	ref_5614_new	12	15	4	7	14	6	5	5	13	3
TGTTTATAAGCGCCGG	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TGCGTACTCCTAAAAA	ref_5614_new	53	97	75	43	72	42	98	49	104	43
TATGATCGTCTTCAGC	ref_5614_new	18	29	24	18	24	13	22	20	27	22
TCCACGTGTCTCCTAA	ref_5614_new	7	10	11	7	15	9	8	5	8	7
AACGGCCGATTAGACG	ref_5614_new	8	29	22	21	17	15	28	13	27	16
TTGCTATGACGTAGTA	ref_5614_new	12	23	10	8	27	14	24	18	21	16
AATTGGATTACCCCTA	ref_5614_new	3	0	8	4	5	2	2	2	3	0
AGTGTACATATTAGTT	ref_5614_new	37	63	36	39	62	39	74	36	95	26
GATAAAGGACAGGTCG	ref_5614_new	12	24	17	18	24	17	23	15	21	14
CGCCAGCTGTCCTACA	ref_5614_new	4	13	5	4	5	2	11	10	8	2
GTGTGTTTCTATAATA	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TTAACAAGTTACTACA	ref_5614_new	5	6	2	0	3	1	6	2	4	8
AGCTAATTAGTACGAC	ref_5614_new	3	7	6	8	7	7	5	12	7	7
CTTTTTGCTAGCCCGT	ref_5614_new	15	32	20	17	24	21	31	17	27	19
CTAGGGATAACAGAGG	ref_5614_new	8	13	11	13	21	10	18	18	23	14
GTAATGTTCGCCCGTG	ref_5614_new	0	5	1	0	2	0	4	0	9	3
GGCGCTGTCTCAGCAA	ref_5614_new	9	17	13	17	28	12	17	7	22	7
GACTATCAGATCTATG	ref_5614_new	16	36	12	17	29	14	24	13	38	7
CAGCTCGGGAGGGCGT	ref_5614_new	3	11	6	8	19	4	16	6	13	2
GAATTAGCATCGGCAA	ref_5614_new	17	47	23	14	30	19	25	18	40	18
ATACCAATGTAAATCC	ref_5614_new	49	101	62	62	101	56	107	54	121	69
CGTATTGATAGGCGCC	ref_5614_new	16	25	25	14	26	7	38	16	30	11
TTGGGGTCCCAAGTCA	ref_5614_new	32	49	24	16	47	32	45	20	46	20
TACTGCTCTAGAACAG	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TTGGGAATGTCACATT	ref_5614_new	18	51	34	27	52	30	30	21	56	35
TGGTGATATCAGCCTT	ref_5614_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTAAGTCTTAG	alt_2378_RC	11	30	23	17	30	15	19	18	31	11
GGTCATTAAGCAGTAC	alt_2378_RC	15	23	30	16	30	29	40	16	27	15
GAGGTGTGCACTTACT	alt_2378_RC	15	34	18	7	20	17	37	9	50	12
AACCAATTCACTGGCA	alt_2378_RC	41	44	43	35	51	33	54	34	61	38
TTTCGTGTTCCAGGCA	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
GTGGACCCTGGGGGGT	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
ACGCCTACGCCGGTGA	alt_2378_RC	10	14	11	9	12	10	11	8	14	5
CGTTCTCAGTCTTGTA	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
GCTAATGGCTTAAATG	alt_2378_RC	31	42	41	34	48	31	51	29	25	35
CTGGACGCTACTGCCA	alt_2378_RC	47	42	45	27	69	36	41	38	66	32
TTTATATTAGATCATT	alt_2378_RC	1	7	2	1	1	5	7	1	3	7
TCTTGCACAGCCTGGG	alt_2378_RC	10	13	9	15	7	13	15	13	20	8
CCTTCTGCGCCCCGTA	alt_2378_RC	5	18	12	10	22	10	22	12	26	4
ATGGGGTCCTGACTCT	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
TTTTACACTTGAGAAG	alt_2378_RC	31	39	45	31	24	30	62	22	62	21
ATGTTCGGGTCGTTCA	alt_2378_RC	28	34	37	30	47	17	38	29	35	30
CTCGGCCTAGCGACTC	alt_2378_RC	35	39	31	40	36	36	60	40	60	35
GTACGATAGCGTATCA	alt_2378_RC	27	32	36	24	19	10	23	17	25	20
TTGGACGATCTCCCAG	alt_2378_RC	6	8	7	4	17	8	15	4	4	4
CCAGGCGGGTGTGTTG	alt_2378_RC	1	0	0	1	2	0	1	1	0	5
ATCTGTAACGCAGAAA	alt_2378_RC	10	7	5	8	19	5	12	10	10	13
GATGACTAACGCCATC	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
CTCTCTCCGATCAGCT	alt_2378_RC	21	28	19	15	35	16	20	16	20	8
TACGAAACAGTATCCT	alt_2378_RC	28	50	35	41	46	29	44	40	49	25
AACGGTCATTAGACCA	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
AGCACAGCGTATTCGA	alt_2378_RC	54	62	55	43	59	41	61	34	60	48
ATCAACGTGAGTGAGC	alt_2378_RC	44	55	65	54	66	53	65	40	54	49
GGATCACGTAACCTTT	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
TTCCAATGCTAACGCA	alt_2378_RC	56	69	55	56	55	55	58	49	79	49
GATAATTGAAAATTGT	alt_2378_RC	37	27	24	29	32	24	27	19	31	28
GATACTACGCACAAGC	alt_2378_RC	15	20	36	17	21	18	27	24	36	17
CTCCCGACCGTTGCAC	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
TATCTAGGTTCCACGT	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
ATGGTTTTAGCGACAT	alt_2378_RC	19	17	20	25	27	14	25	19	30	28
TATTTTTGTCAGTGTC	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
GCAAAATTGGTACTGC	alt_2378_RC	25	28	20	20	28	13	26	15	26	15
TCATCTGGGTGTCGTG	alt_2378_RC	11	9	15	6	10	7	8	8	12	9
AGTTGACTACATCATC	alt_2378_RC	7	3	17	8	5	11	2	10	14	4
CTTCTCAGGCCTGTCT	alt_2378_RC	82	85	94	76	104	77	98	106	69	71
GCACAACGCTTACATA	alt_2378_RC	11	14	15	16	15	12	32	6	24	11
CTCTAGTAAATTTTGT	alt_2378_RC	7	18	10	13	14	6	22	6	14	10
CGTCGAGGGCTGTGCA	alt_2378_RC	109	151	137	87	155	121	157	80	168	118
GTTCTTAGCTGAAATA	alt_2378_RC	5	1	1	2	2	2	1	0	0	4
CTGTTATTACGACTAC	alt_2378_RC	322	337	355	277	356	285	401	278	370	259
CGAAAGTTAGCCAAGA	alt_2378_RC	30	43	43	31	44	27	48	21	39	34
TGATTCTGTAATAATT	alt_2378_RC	10	9	6	3	12	1	8	4	6	2
AAAGTATTCGGTTTAA	alt_2378_RC	10	9	16	9	9	8	15	6	10	13
CGTCTGGAGCAATTAT	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
GGCGTGTTCGCTTAAG	alt_2378_RC	39	30	32	33	41	29	38	31	45	27
CGTCTTACTGTTATAT	alt_2378_RC	56	80	101	60	66	73	65	80	74	78
AATCGTCGACATGCAG	alt_2378_RC	2	2	12	5	7	1	3	5	7	8
CTGCTTACCGCTTGCA	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
CTTACCTCTTTATAAG	alt_2378_RC	75	128	76	71	129	65	140	71	139	57
ATGACGTTTGCACGTA	alt_2378_RC	19	20	32	27	35	23	20	16	31	23
GGTAACGGACGGGTCT	alt_2378_RC	14	15	12	11	26	4	13	11	14	10
TTCTCAGTCTTCTTTA	alt_2378_RC	31	26	33	23	31	28	29	29	38	29
CAATATAACCACCGTC	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
TTTCTCGCGGCACCTC	alt_2378_RC	7	9	13	6	12	4	13	10	20	11
TTCTCACTATGGAAAA	alt_2378_RC	7	8	10	3	15	6	6	11	17	9
TGTTGCGGTAACTCAA	alt_2378_RC	6	10	8	5	12	6	7	9	9	9
CATTCAGCTCGAAAGC	alt_2378_RC	10	9	5	3	8	5	8	5	7	5
GCAATTCACCGGATAA	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
ATTGGTTGATGCTGTA	alt_2378_RC	4	1	3	6	4	7	0	2	5	0
TTCCTACTGTCCTAAT	alt_2378_RC	13	10	10	12	15	7	20	15	19	12
TGGCTTCCGCCGCGCA	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
AGCTCCTTCTACTCGT	alt_2378_RC	52	73	74	54	74	56	74	54	68	56
TTGGCTGCCGTTCCAG	alt_2378_RC	14	15	18	11	10	14	15	19	10	10
TACGGTCCCTTCGACG	alt_2378_RC	74	61	99	71	86	71	106	51	124	61
ATAACGGCAGACGGAA	alt_2378_RC	41	64	66	57	72	41	76	59	84	48
CGGGCTGGGCGATGAG	alt_2378_RC	7	1	7	5	5	4	5	2	3	10
TTGGTGTTTCGCATAT	alt_2378_RC	14	25	9	16	22	13	28	17	35	19
CATAATTTAGGGGCCA	alt_2378_RC	14	21	28	12	14	13	39	18	20	8
GGTAACCCTGCTAATG	alt_2378_RC	35	31	42	25	30	29	33	30	43	24
ATATCCGTTTGCAAGG	alt_2378_RC	26	22	24	16	31	20	18	16	33	16
GCATAAATTTGATTTC	alt_2378_RC	0	0	0	0	0	0	0	0	0	0
CTTTCCCGCAACAGTC	alt_2378_RC	21	43	35	33	40	29	40	20	36	24
TAGGCCGCGTGTATGA	ref_1558_negative	19	26	26	25	36	21	24	17	35	27
TCTGCGCCACAGCGCC	ref_1558_negative	53	65	77	61	75	47	91	56	86	62
TGAATGACCGACTATT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TTTTAGTTACATCTGG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GATGTGCTCCACTATT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GAATGTCCCTATGTAT	ref_1558_negative	25	26	26	22	44	25	35	22	28	21
TGATCCCCGCGCTAGG	ref_1558_negative	18	24	19	20	30	15	30	18	35	18
TTAAACACCTTATCGG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TAGATTCCGCTTTTCT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CTCTGGTATATCCCCT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GCAATGCTCCGAGCCT	ref_1558_negative	14	9	23	16	20	13	22	15	25	15
GACGTGCTGGGAGCAT	ref_1558_negative	3	8	7	4	3	6	13	2	6	2
TCTGTATGTGGTCTAT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TCAAGCAATGTCTGCG	ref_1558_negative	7	8	9	11	11	7	9	5	8	7
AGGTCTAGAACAGTTG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GTTGTGGTACAACTTG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GGAACCACTACTTTAC	ref_1558_negative	13	10	13	10	15	7	13	15	21	15
TCTAGTCATCGCGTAC	ref_1558_negative	8	4	6	11	4	4	12	6	6	3
TATTGTGCATTCCGGT	ref_1558_negative	13	20	9	8	10	9	8	2	10	7
ATATCTGACCTTTTGT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
AAATTCAATAAGCGGG	ref_1558_negative	32	37	41	31	39	27	43	53	47	35
TGGAGCACCCGTCTCA	ref_1558_negative	26	36	29	20	41	23	35	28	45	23
TTTTAGAGCGTTTCAT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TTCGCATTGATTATTA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TGTGGTCTTCGTGGCC	ref_1558_negative	4	7	8	3	15	2	10	6	6	4
TTCGATCGTCACCTGT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TAAGCTAGCTGTGTGT	ref_1558_negative	2	2	3	3	5	7	3	1	7	2
TCCCTCTGCTCGCGTA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TCCGGTTCACTTTTCG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CCCTCACAGAGTAGGC	ref_1558_negative	28	18	18	12	19	16	21	22	20	7
ATGTTACCCGCCGTAA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TTGTCCCGTTGGAGGC	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TACATTCCTCGTACCT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TCTGCTACGTGACAGT	ref_1558_negative	14	15	16	16	11	16	13	4	13	5
GAAGAGCGTTGAATTT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GCTCGTTTACCCGTCT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GTAGTGATTTCTCGGT	ref_1558_negative	1	0	2	3	1	2	1	2	4	1
CGTGGGCCAGGCATTC	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TCGCTCGCAGTAACTC	ref_1558_negative	51	64	56	58	47	43	56	36	60	39
CTCTGGCCTATCCGTC	ref_1558_negative	12	35	30	17	21	16	24	11	40	13
GAATCAGGTCTTGCGA	ref_1558_negative	9	9	8	9	17	7	14	9	10	8
GCTTACACGTGTTTCT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TACGTTTGTTGTATAA	ref_1558_negative	28	54	43	34	56	29	49	28	47	32
TTCGGAACCTTCTCTC	ref_1558_negative	12	12	17	11	14	12	12	10	21	9
GGCATACGCTCTGGTC	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CGTTCGCATCGTCAAT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CGAAAGCGCTGAGTGG	ref_1558_negative	17	30	36	36	30	19	31	19	31	15
CCGGGTTAGCGCTGCA	ref_1558_negative	12	20	20	19	28	10	11	15	18	20
TAGTCTCCTTCGGGTA	ref_1558_negative	26	51	35	20	51	28	71	28	58	27
AGTTCGACCTTGGCTG	ref_1558_negative	1	6	8	12	10	4	5	7	8	5
TGCCGTACTCTGCAAG	ref_1558_negative	12	18	6	4	12	8	22	3	10	4
CGTATGCTTTGGTTCA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CCCATTTGAAACCTCG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GGTGATCCAACACGGC	ref_1558_negative	2	2	1	1	0	1	1	0	2	0
TCTCTACGGCCCCCTC	ref_1558_negative	33	21	29	19	31	20	28	24	22	25
TGGTCGAACACCACCT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CTATGTTGTTATACTA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
AATCCCTTGATATCTC	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TGGCTGTGACACTTTG	ref_1558_negative	2	3	5	2	5	2	6	5	8	3
AGACGTTCTCAGGTTA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CGGAATAGACGATGTG	ref_1558_negative	21	27	27	29	36	22	27	23	32	21
ATCTTTCAGTGTGGTG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TCGACGGGCCGCGGTG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CTTGCAGGCGTCTTAA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GTGAGCCCGAGTGTGG	ref_1558_negative	44	57	60	48	63	54	62	41	78	36
AGAGACGGGTAGTACA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TCTTCGTTAGTATGCA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TTCTCTACTATCGTGC	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
AGTATTGGCCTCCGAC	ref_1558_negative	11	19	20	14	21	18	30	18	18	12
CGCCTCTGCTGTCAAG	ref_1558_negative	5	36	8	9	32	9	35	10	37	11
AAGCAAGTGGTTTTTA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
ATTGTTTTTCGCTTGG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CCATCCTTCGTAATTG	ref_1558_negative	0	12	17	10	18	2	13	5	16	7
TCGAGCTGGACCCGTC	ref_1558_negative	5	8	7	12	10	8	6	3	6	5
TCGGGCGAACTTGAGT	ref_1558_negative	4	14	0	4	23	5	15	0	23	2
TTCAGCCTGACTGGAT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
AGAAGCGCGGTTTATC	ref_1558_negative	2	5	7	2	1	3	6	1	5	2
TACTAAGACTCGACGT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GAGTTTAGAGGACTTT	ref_1558_negative	14	21	9	3	14	8	5	10	21	5
ACACACCCCATGTTGT	ref_1558_negative	0	6	0	1	3	0	12	0	3	0
TTCCTTGCTTGTTGTT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CTTATTCATTGTTACG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GACTTAGTTCGTCAAT	ref_1558_negative	27	32	29	21	32	30	36	19	43	27
TTTTTGACGGTCTTGG	ref_1558_negative	4	12	4	2	3	2	8	3	3	3
CTCTAGAAAAGTTGGC	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TTCGAGTTTTTCCCGT	ref_1558_negative	8	20	18	8	9	6	10	8	21	9
TGCTTGGATCTTCTAG	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CTGCCTTACGTTTAGA	ref_1558_negative	14	21	18	10	19	13	22	14	24	9
AACACTGCCAATCTCA	ref_1558_negative	2	9	4	4	3	0	9	0	4	2
AGAACCTCTATGCATA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TTACTGTTGCTGTCCC	ref_1558_negative	40	45	26	27	42	37	64	29	54	33
GCGAGGACGGTCACTG	ref_1558_negative	20	17	17	15	22	14	9	23	12	12
TTTGGAGCTAGGTTCT	ref_1558_negative	15	20	21	10	17	9	18	13	30	10
TACCACTGTCCGCTCA	ref_1558_negative	9	12	7	6	15	11	14	7	11	17
ATACTCTGAGTAATAC	ref_1558_negative	24	26	22	21	26	20	44	13	28	25
CTCGCTTCTTCAGCTA	ref_1558_negative	8	14	12	14	12	14	14	11	16	17
CCCCATTCTCATCCAC	ref_1558_negative	5	5	11	4	13	12	10	10	10	7
CCTTAATGTGGTCTTT	ref_1558_negative	115	220	136	141	240	116	245	118	235	120
CTCAGCTTGCATGCTT	ref_1558_negative	12	33	18	13	28	18	36	12	53	7
CGCTACTCAGGGCAAA	ref_1558_negative	22	33	18	21	21	25	24	20	28	17
CGTAACTTCACTTTTT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GACACCTAGCCTTGAT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GTTGATGAAGTTTGGA	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CAGCGGCGTCATTACT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
TCCGCCCAGTCTGCGT	ref_1558_negative	36	38	46	48	53	46	55	40	45	41
GTAAGTATGCTAAATT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
CCTGCTCCGTGAAGAT	ref_1558_negative	0	0	0	0	0	0	0	0	0	0
GGACATTTAAGGAGAG	ref_1558_negative	36	34	41	29	32	29	29	29	47	24
TATTAAGTTGTGAATG	alt_4994_reverse	53	33	82	69	36	61	55	71	54	58
TACGGATTCTAACATA	alt_4994_reverse	25	17	28	16	17	16	12	22	13	36
GTAGAATTCTAATTCG	alt_4994_reverse	17	18	39	27	18	17	15	27	8	14
TAGTTTCCCCTGGAAG	alt_4994_reverse	9	10	20	20	15	29	12	17	14	16
CACTGCGACCACTGTT	alt_4994_reverse	13	10	16	7	8	17	10	8	7	11
ACGTGTAGGAAATCCT	alt_4994_reverse	178	128	234	148	123	147	138	169	141	154
ATATAAGCCTCGCACG	alt_4994_reverse	79	57	92	69	51	59	54	74	55	71
ACATCCAGAGGCGGCG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TACATCGGAAAGCCAT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGCGTTTTAGATT	alt_4994_reverse	28	15	28	18	15	18	13	24	19	22
ACGCTGTATGATCACG	alt_4994_reverse	90	59	119	112	48	88	71	100	71	88
AAATTCTCAGTCCTTT	alt_4994_reverse	299	158	360	298	157	265	179	288	151	253
GCGTCTGTATTTGTCA	alt_4994_reverse	79	59	64	71	57	57	32	57	90	51
ACGGTAATATAACGTA	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTAAGCATTGAAA	alt_4994_reverse	34	22	38	35	12	26	22	26	24	23
GGTGGATCCGGACAGT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TGCATATGGTAGAAAC	alt_4994_reverse	21	14	11	15	14	29	10	21	16	20
CAGTAAAACCTTTCGT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCGCACGAACATG	alt_4994_reverse	206	122	251	213	116	205	110	219	124	183
AATCTCTACTCGCGGT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTCAAATCTTCTC	alt_4994_reverse	24	20	31	26	20	24	12	21	20	24
GGTCGCCATTCACAGT	alt_4994_reverse	62	31	72	55	28	50	29	45	38	42
GGCTGACGTAAGGTCT	alt_4994_reverse	49	15	81	42	28	55	31	58	21	53
AATCTTGACCTGCAGC	alt_4994_reverse	178	91	206	163	123	180	91	168	110	157
TGACCACAGGAAGGCT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCCAATGCCCCCG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTGTGGTCTAAGG	alt_4994_reverse	7	2	4	9	8	6	3	6	10	6
CCTGTGTTGCTATCAT	alt_4994_reverse	245	126	270	218	120	207	136	211	110	207
ACTCATGCAAAACCAC	alt_4994_reverse	84	55	104	124	79	93	73	102	63	76
GATAGGAGGTTCTTCT	alt_4994_reverse	67	38	83	58	37	69	41	60	39	59
CTCCTTCACGTTTCTA	alt_4994_reverse	59	39	59	55	41	54	41	50	41	57
GGGGCCTCGTGTATAC	alt_4994_reverse	23	6	16	17	4	14	4	19	11	15
GGCCATGGAACGGTGT	alt_4994_reverse	13	9	15	16	4	18	10	19	4	10
AGATGTCCTCCATCAT	alt_4994_reverse	134	75	143	107	64	117	76	94	64	107
ACTCTAAACGCTCGAG	alt_4994_reverse	94	57	95	93	56	83	52	72	54	76
GGCCTTGGCCTCTATC	alt_4994_reverse	46	53	54	67	42	57	29	49	40	42
CCACAGCTGGAGGGGT	alt_4994_reverse	12	10	18	15	10	11	5	14	7	17
CAGTAGCATACGGTCA	alt_4994_reverse	5	5	29	21	13	13	10	17	10	17
AATATATGCCTGAAAT	alt_4994_reverse	43	37	49	59	25	41	27	41	14	43
TATTTGACGGGGTTAC	alt_4994_reverse	81	65	127	91	52	97	60	72	62	65
GTTCAGGCAGTTGTGG	alt_4994_reverse	8	4	7	4	4	9	4	10	4	5
CTATTGCTGGCCTATA	alt_4994_reverse	33	21	40	41	32	42	32	27	25	33
CTGGCCATTTTTCCTG	alt_4994_reverse	32	23	27	33	15	23	21	21	19	29
TGGATAGATGTTCAAC	alt_4994_reverse	80	36	61	59	28	41	37	57	43	53
GTCCGCAAGTAATCAG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
AATTACAATTGCAGGT	alt_4994_reverse	15	9	23	7	8	13	9	15	14	19
TTCTCCTCTGACTTCG	alt_4994_reverse	374	265	450	426	311	365	258	392	268	353
CTTGTTAGTGTTGGCT	alt_4994_reverse	44	39	55	55	37	57	45	50	36	44
GTCGCGAGATGACGTG	alt_4994_reverse	24	14	34	27	6	35	11	37	21	30
ATCTATTCCGTTTGTG	alt_4994_reverse	96	57	87	76	71	84	75	64	70	60
CCAATATATTCGCCAA	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TAACGCTCTACTTCCC	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TAATCGTAACTCGAGT	alt_4994_reverse	115	56	132	107	65	97	61	89	88	124
TTGACCTAGCATTCCC	alt_4994_reverse	15	7	18	21	5	7	10	8	14	8
TGCCTACTTTTTCAAA	alt_4994_reverse	67	36	76	57	26	47	46	51	49	52
GGAATCGTATACGGTC	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
AGGGACGCCCGGGATG	alt_4994_reverse	116	77	155	127	72	95	59	117	75	122
ACGTTACCAACTGAAT	alt_4994_reverse	29	18	25	27	7	15	10	22	17	15
TTCAAGGATATACCTC	alt_4994_reverse	5	3	7	7	6	5	4	6	7	5
CCGGCCCTATCAACAT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ATAACGGTTTATACTG	alt_4994_reverse	28	19	24	19	12	24	8	16	11	12
TTTGTTCTTAGGTTCC	alt_4994_reverse	25	15	29	9	12	22	23	20	10	12
CCGTGGTAAACTGTGT	alt_4994_reverse	161	89	172	179	107	162	90	133	104	160
ATTGCAGCTTAAACTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ATCGGTTCTTGCTACA	alt_4994_reverse	16	14	32	25	10	17	18	22	26	27
TACCGTTTTTTTGACA	alt_4994_reverse	59	43	84	52	51	53	37	59	43	57
GGTACTTTCGCTTTCT	alt_4994_reverse	406	107	448	372	105	348	120	381	131	352
GCTTCTCATCGCGTTC	alt_4994_reverse	112	86	136	141	76	123	81	122	88	117
CACCCGGTATGTGGCC	alt_4994_reverse	14	17	25	16	14	20	17	14	15	15
CGCTAAGGCCGCGCAT	alt_4994_reverse	26	22	23	30	16	34	31	37	19	32
TCTTGTATCTACTATT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGCAGGGTGATCT	alt_4994_reverse	73	39	80	73	40	60	36	66	41	59
GTCTTGGTTCTCTGGC	alt_4994_reverse	114	83	159	134	92	137	96	129	92	95
TCGAAAAGAGTTGGTT	alt_4994_reverse	195	135	242	203	129	194	130	215	135	192
CCCCAGGAAACTCCGG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
GATAGGCTTTGGTGTC	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TAGCGCGGCATTATTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CATGATGTCTCTCTAG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTCAAGGTGTGGAGTT	alt_4994_reverse	106	86	133	151	97	131	122	126	97	93
TATGTAGCCCGTGTCT	alt_4994_reverse	55	24	59	65	22	57	29	44	27	43
AAGTTGAGACTGTTAC	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCATGCGTACATAGCT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TATAGTGTGCATAGAC	alt_4994_reverse	33	30	52	51	31	29	23	22	34	37
ATTTGTAGGCATATCT	alt_4994_reverse	5	1	3	0	3	2	4	0	5	2
CGACATTGACTGACTT	alt_4994_reverse	67	36	87	75	54	52	47	53	41	52
GCACGCCGTCATTGTA	alt_4994_reverse	38	35	58	58	23	52	30	53	52	43
AATTATGTGAGTAGAC	alt_4994_reverse	7	4	12	3	3	15	3	10	5	2
TTTTGGTTTGGTGTCA	alt_4994_reverse	30	26	36	38	19	38	24	38	22	36
AGGTCGCACTTCGGCA	alt_4994_reverse	6	9	13	10	5	7	3	8	6	13
TTGCTCATCAAGCATA	alt_4994_reverse	13	12	17	10	7	16	10	12	11	7
CCTTTAGTATGCCTAT	alt_4994_reverse	41	27	57	55	33	32	48	51	38	44
GCTTGGCTTCGAGCAC	alt_4994_reverse	3	0	1	1	2	0	0	4	0	3
CAGATGTTTTGATCTT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACCCACTTGACTCAGA	alt_4994_reverse	89	42	114	89	44	67	58	71	53	58
AATGATGTTGGAAGAA	alt_4994_reverse	89	45	116	79	67	101	54	87	64	83
ATTTCCGGTCCATTGT	alt_4994_reverse	36	17	39	43	34	35	28	38	28	17
CAAAACGAACCGGGTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCACACCTCATTG	alt_4994_reverse	12	11	10	15	11	5	9	7	8	13
CTACTGGGTCGGTTCC	alt_4994_reverse	80	50	120	93	58	85	58	86	53	56
GATAGGCTTTGGTGGC	alt_4994_reverse	14	3	12	12	5	13	7	6	6	16
TATCGTCTGTAGGAGG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGGGATTCCTGCA	alt_4994_reverse	39	27	63	45	39	40	28	34	32	35
GGGGGGCTAACTTCAT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CGAGAGGCTGTATGAT	alt_4994_reverse	48	25	56	60	35	37	33	43	42	35
CCCGAGTGTAAGTTAT	alt_4994_reverse	10	5	9	19	9	14	10	14	6	8
GAAGGGGCTCTCTCTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCACGCGATAGTATGT	alt_4994_reverse	13	9	26	16	15	12	7	12	17	15
CCAGGACAATAATATT	alt_4994_reverse	19	10	22	16	6	16	13	16	14	22
TTTCGTTAGCTTTTGG	alt_4994_reverse	29	23	33	30	11	35	26	35	13	19
GTAAAGATTGTCCCTA	alt_4994_reverse	68	41	76	76	49	72	35	87	32	52
GCGCTAATAGTGGATT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTATGCCTTGATC	alt_4994_reverse	6	9	7	5	3	4	6	13	8	2
TGTTTCACAATGTTTT	alt_4994_reverse	53	28	61	61	38	48	40	61	28	48
TTCTTCGCCTGGAGTT	alt_4994_reverse	26	16	32	33	17	37	20	30	22	24
GACTTAACCAACTCTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
GATTATTCGTGGTTTT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGTTATCACCTTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGTGGCTTATTTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACTAATTGGGGTTGGG	alt_4994_reverse	25	16	34	30	23	34	17	33	19	39
GTGACCTAACGGAGTA	alt_4994_reverse	29	17	29	21	19	24	19	20	14	16
ACCCGTACGACACATG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGTCAGAATTCAT	alt_4994_reverse	22	10	16	25	12	22	14	30	13	22
TCAGATTTTCGTGGGT	alt_4994_reverse	47	35	47	53	32	40	31	33	33	37
GGATTGATAGATCACG	alt_4994_reverse	317	235	377	337	197	342	222	261	215	280
CGAAGCTATGCAAGGA	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTTTACGTTCACATAT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTCGATAAACACG	alt_4994_reverse	15	6	16	15	6	11	5	10	5	11
GAAACTGGTTTAGCAC	alt_4994_reverse	8	4	11	16	7	3	5	6	7	14
GTAACGCGAATGCACT	alt_4994_reverse	110	57	115	105	58	92	46	81	67	91
CAGCGATTGTGGACGT	alt_4994_reverse	54	24	84	49	33	44	28	57	41	54
GTTGCTGCTATTCCTC	alt_4994_reverse	35	17	29	34	25	29	29	23	30	32
TACTATTAAATTCGTA	alt_4994_reverse	53	28	98	60	40	61	39	58	37	65
GAATCCCGTCATTGAA	alt_4994_reverse	9	12	21	20	18	23	9	28	18	12
CGGTTCGTCCCATATG	alt_4994_reverse	21	10	37	19	19	22	21	22	7	18
GTCTCGAACCCTGACT	alt_4994_reverse	131	65	143	120	50	121	78	89	70	106
TGTAGTACTGATGGAG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TATCAGATCGTCACAG	alt_4994_reverse	31	29	42	45	19	33	30	32	23	34
GAAACATAACCGTCTC	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CATAATTTCTGGGAAG	alt_4994_reverse	156	65	141	133	90	132	77	114	81	126
ATTTGAAACTCGTGCG	alt_4994_reverse	31	12	56	36	31	31	25	37	21	26
GTACTATTACACGACG	alt_4994_reverse	26	12	24	26	22	19	23	28	15	19
CCTATCCTGCTGTTTT	alt_4994_reverse	97	48	119	100	52	82	56	86	55	93
GGGCGCATCCCTCACT	alt_4994_reverse	81	44	98	86	49	60	39	63	41	71
CGTCTCGTCTTTTGAC	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCTTAACGTGTTA	alt_4994_reverse	30	25	36	27	35	48	27	25	42	34
ATGGAAGCTTTTCTGT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CTCTAATGCTTGGATG	alt_4994_reverse	54	47	68	63	48	53	49	62	58	42
TTCCGCCAGCAAATGT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CGACTTATTGAGGGAT	alt_4994_reverse	20	12	29	33	10	21	18	12	8	20
GGCCGGTCAAGGTGTC	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
ACTCAGACCAGTTGTT	alt_4994_reverse	53	37	51	72	40	39	33	52	38	50
TAATATCGCTATAGTG	alt_4994_reverse	374	245	463	412	245	349	276	358	247	324
TGGCATATGCCTTCAT	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTACCTACATATGTAT	alt_4994_reverse	121	99	170	146	110	136	108	126	80	131
CTGAAGGTCTTAGAAA	alt_4994_reverse	55	42	57	43	43	53	37	50	43	45
ATAGTCGCGATCAATT	alt_4994_reverse	157	83	200	150	84	153	78	154	111	128
CTGCTGCACTCTTAAC	alt_4994_reverse	119	97	142	149	87	125	69	123	109	97
TGCTAACTACTAGCCA	alt_4994_reverse	54	36	68	69	40	48	46	55	31	54
CCTATTTGCGCATATT	alt_4994_reverse	308	197	333	321	179	291	190	287	200	236
TTTCTAGAACAGTTGA	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
CCATCGGGCTTTGACT	alt_4994_reverse	55	21	74	52	33	54	35	52	35	52
CATAATATCCTTTCTC	alt_4994_reverse	169	87	189	154	74	132	77	131	104	130
GCGTTTTGGGATTTTC	alt_4994_reverse	20	15	28	18	6	15	17	11	12	14
CCGCTCAGTGTGGAAT	alt_4994_reverse	234	224	284	242	169	204	204	232	232	181
GTGTGATATCTTCGAT	alt_4994_reverse	22	6	27	28	10	26	7	13	14	25
TTTAATGCTATGCCTA	alt_4994_reverse	108	64	106	91	58	84	82	89	76	95
TGCTCTCTTTGTGTGC	alt_4994_reverse	54	32	68	68	35	50	34	70	51	48
CATCCGACCCATCTCA	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTGCTTACGGGTT	alt_4994_reverse	113	77	122	118	112	131	83	97	107	122
GTTTCATATCTTGCGC	alt_4994_reverse	13	7	24	16	3	16	14	13	11	20
ACCCGTTGCAGGACTT	alt_4994_reverse	79	44	108	65	39	71	53	83	51	78
GGAGCCCTGAACGTTG	alt_4994_reverse	0	0	0	0	0	0	0	0	0	0
TGAAACACGTTGCTAT	alt_4994_reverse	89	59	122	130	56	101	69	102	74	112
GGAGGGGGTCAATATA	alt_2853_RC	32	38	39	34	39	36	52	35	47	32
GGTACTCCGGCAACCG	alt_2853_RC	25	32	41	32	32	22	37	29	46	27
ATATGTTCTGTGTTGT	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
GTCATGTAACTTTTTA	alt_2853_RC	37	35	57	51	47	35	59	41	56	42
CACTTGTGTTTAGGAA	ref_2853_RC	170	189	185	144	239	146	203	129	248	146
CGCGCGTTATTAGTGC	alt_2853_RC	7	27	14	13	34	7	37	15	36	11
GTTAACGCGACAAGTC	alt_2853_RC	52	74	63	56	61	57	50	40	59	54
TGGACGCTCCAGATAA	alt_2853_RC	37	46	50	42	54	26	64	40	63	53
TGCCCAGTCCTTTTAT	alt_2853_RC	9	12	14	13	9	6	10	9	14	0
TTTACCAATATATCGA	alt_2853_RC	3	1	0	1	2	4	0	6	2	2
CTTTTTTTTTATGATA	ref_2853_RC	45	57	85	68	68	66	73	45	80	60
CAACGCACGCCAGGAC	ref_2853_RC	11	20	13	26	30	24	27	16	18	19
TCGGTTTGTCCTGCTA	ref_2853_RC	50	47	49	36	39	35	41	24	39	26
AGATAGAGTATGTCTC	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
AACGCTAAGCCTTATC	alt_2853_RC	28	48	41	44	43	27	72	39	60	30
TTAGGGGCCCGTGCTT	alt_2853_RC	13	14	7	8	13	14	9	10	10	9
TGATACCCATATGGCG	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
GATCCTTGCTTAATAG	alt_2853_RC	12	18	24	16	17	22	20	9	29	12
CATTTGTTCACGGCTA	alt_2853_RC	47	72	49	64	69	43	86	32	102	36
CCCCGTGCTCTGATAT	alt_2853_RC	16	23	39	18	39	35	30	26	45	25
CCTTAGCGTTTGTGGG	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
ATTCGTTCCACTTGGC	alt_2853_RC	18	37	26	20	24	21	30	16	29	23
CTGGATCACCAGTTAT	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
GCGAAGTAACGCTTCT	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
ATTGGGGTGGGGTTTG	alt_2853_RC	52	65	65	72	68	53	84	51	73	53
GAGTTACCGTTGAATA	alt_2853_RC	21	29	11	12	29	18	31	10	27	21
ACGATACAGTTTGATA	alt_2853_RC	54	91	75	59	79	52	87	46	83	50
ACACCGGAGACGTGCT	alt_2853_RC	1	16	6	7	18	7	17	11	16	3
GCGTGTCGTTACTCAT	alt_2853_RC	18	25	36	23	24	20	34	19	24	23
TCTATTCTCTGAAAGT	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
ATCAATTATGTATCAG	alt_2853_RC	6	1	6	3	5	4	6	2	2	3
CTTTTTCAACACCAAT	alt_2853_RC	8	20	17	16	16	15	10	12	16	8
GCTCAGCTGTTGGAAC	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
GATCCTTTCTACACTT	alt_2853_RC	46	75	57	43	49	41	71	43	92	27
TATAATTTAAGTCAAG	alt_2853_RC	14	46	30	15	28	21	25	15	26	16
AAGCTTAACCAGTAAT	alt_2853_RC	11	21	22	27	22	16	32	14	23	16
CGGTACTAAAGGTAAA	alt_2853_RC	20	28	33	17	34	23	35	27	35	19
ATAATCATACGGGCTC	alt_2853_RC	13	28	13	17	18	17	11	10	23	14
ACGCTCTAAGTTCACA	alt_2853_RC	1	7	4	4	5	4	4	7	9	4
AATATGTCATACCCTA	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
ATGCGTGCTCTTTCAG	alt_2853_RC	34	51	53	27	49	45	44	36	44	29
ATAATTCTCAGGCTTT	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
GCACACTCGAATATTT	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TATCCCTGCGATAAAC	alt_2853_RC	20	51	27	31	47	27	57	28	58	18
ACGTTCATTCTATACT	alt_2853_RC	40	55	42	42	50	34	49	29	43	25
CATAAATACTTTCACT	alt_2853_RC	8	4	7	5	8	8	8	11	12	7
ACGTAGTATGTTTTCT	alt_2853_RC	129	137	141	118	137	128	144	131	161	126
TCTTATCTTCTGAAGT	alt_2853_RC	46	56	64	33	61	43	46	60	60	51
CAGTTCGTATCTGTCG	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
TTTCCAATCCGCGTTA	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
TTAGTCTTAGCAACCT	alt_2853_RC	14	18	14	16	19	10	18	12	16	10
TAGTAATGTCTGCGAC	alt_2853_RC	37	33	50	43	37	21	34	23	48	28
CGCGGGGGCAGGTAGG	alt_2853_RC	25	22	32	12	19	16	40	29	33	19
GGGAGACCATGGTCTC	alt_2853_RC	26	24	25	22	25	31	33	21	35	22
ACGCAATTCGCTTAGT	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
GCTGTCGATGACTTTA	alt_2853_RC	20	35	38	22	42	26	38	25	49	18
GGCCGTCAGCGGGGTG	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
CGTTCTTTTCTTATCA	alt_2853_RC	19	28	35	25	25	18	36	21	48	18
TGACCATTCACTGGGG	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
GCCCATATGGCTCCAA	alt_2853_RC	70	77	91	71	98	72	87	78	101	66
TCCTTGGGGTGCGGTC	alt_2853_RC	92	96	81	84	97	77	101	74	115	92
AACCATGCTGGCGGGG	alt_2853_RC	16	23	22	28	17	17	34	14	39	17
TTCTCTCTCCCAAATT	alt_2853_RC	62	69	47	46	66	52	62	52	67	44
CCTGGTGTGCTTGCAT	alt_2853_RC	0	1	1	0	0	0	0	1	0	0
CGAACCTATGTCGGGG	ref_2853_RC	107	130	122	81	158	95	181	83	147	70
GCCTAGTGCACGTCGA	alt_2853_RC	8	17	11	6	16	9	14	2	12	2
TGGTACCAATACCAGC	alt_2853_RC	0	0	0	0	0	0	0	0	0	0
TGGCTGGTCTACGTTA	alt_2853_RC	19	18	23	23	23	25	22	19	24	12
CCTATTACACAAGATT	alt_5655_new	1	7	3	2	8	2	13	4	9	0
TTTGTGCTTAATTTCA	alt_5655_new	8	7	2	5	14	6	10	10	7	3
GATCATCTGCTCTTTT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
CTGGCCCACGCACCGC	alt_5655_new	8	5	5	4	9	2	3	3	3	7
TGTATGGCCATCTTTG	alt_5655_new	27	80	42	30	56	19	46	31	66	24
AGCGTAGACTTTAAAT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GATTTGTTTGATTCGC	alt_5655_new	3	23	15	3	13	12	13	12	19	13
CGAGTGTAGCCTTGGC	alt_5655_new	11	24	17	18	32	15	18	18	18	7
CAGCGCTGATATCGAG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TTCCAATACGTGCATC	alt_5655_new	21	44	29	16	26	20	40	18	40	32
ACTGTTATTTTGTGTC	alt_5655_new	14	25	19	16	26	23	27	16	26	9
TAATCGTTGGATGGCT	alt_5655_new	56	86	60	57	81	68	85	52	84	55
GTGACCGCTCGTATCC	alt_5655_new	5	14	9	6	11	5	14	6	11	6
ATGTAGTCCTAACTCT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
ATTCTCAATGGAGGCC	alt_5655_new	18	18	14	11	26	14	24	14	28	19
GTTCCTAGTCCACTGA	alt_5655_new	12	18	18	17	18	9	15	11	23	5
CTCAGACCTCATGTAC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
CAAGCTTTGCTCGATA	alt_5655_new	17	24	21	21	24	21	17	8	17	24
GAGTCATAGGCCACGT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
ATATAGAGCCACAACT	alt_5655_new	0	4	0	1	1	1	1	0	0	0
GCACCTATATCGTGGG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GCTTTCTGTGTCAAAC	alt_5655_new	2	4	10	1	7	3	15	7	2	8
ATGTTCCACGTCAGCG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GACGTATTACGTGCTC	alt_5655_new	30	37	29	37	36	27	46	25	44	25
TCCCGCTACTTTGGCA	alt_5655_new	48	117	59	57	93	57	113	56	119	38
TGGCTTCTGAGGCTGC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
ACGGCTCGTGCCCCCT	alt_5655_new	6	8	7	5	15	11	19	9	15	11
CCTAGCTACCCAAAGC	alt_5655_new	18	40	28	22	38	23	34	23	48	18
GTTTACGTTCGGCGGT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
CATGTCACTTCCTCAT	alt_5655_new	18	38	18	14	30	14	25	12	33	16
AAAGTTCCCTAACGTA	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GAGAGTGCATCATGTC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TTAGCAAATTTGGCTT	alt_5655_new	21	63	41	20	53	21	57	33	53	25
GTAAAAATCAGGTCAA	alt_5655_new	34	79	50	38	66	34	64	31	81	40
CGATCGTACTCAGTTT	alt_5655_new	19	46	8	11	42	10	42	9	44	12
ATCGCCCGGGTACCGT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
AGATTAATTATTCATG	alt_5655_new	57	130	91	79	138	79	114	67	143	58
TATAGTGGTATGTACC	alt_5655_new	91	131	96	77	132	72	161	61	167	78
GTCGAAACAGTATCCG	alt_5655_new	32	74	42	26	68	33	64	27	63	23
ACACATGTGAGCCTTT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
CCCCTGAATGTGATCT	alt_5655_new	44	91	72	72	111	52	73	54	131	43
AAGTTCTTTTTGGCAC	alt_5655_new	19	42	30	19	35	25	25	17	35	29
TCCTATTCATTATAGA	alt_5655_new	33	45	37	25	41	34	57	25	70	31
TGTTTGCGTCTATACG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TCTCTTTGTAGAGAGT	alt_5655_new	51	61	55	41	88	33	81	37	74	42
AGCGGCCTTGTGGTTG	alt_5655_new	30	65	37	37	50	26	68	48	61	20
GTTATGTCTCATGATT	alt_5655_new	12	19	13	19	23	12	25	10	25	14
GATAGCTTAACTGCTC	alt_5655_new	44	65	33	30	75	34	71	42	46	29
ATTTCGTTTCATCAAG	alt_5655_new	27	37	29	19	37	23	43	17	35	17
CCGGTATTTGCTAGAC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
CAACTCGGTTATTGAG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TTCTTTTCGACACGAA	alt_5655_new	9	17	8	19	9	12	24	17	14	7
GTGTTACATTGGCTTC	alt_5655_new	62	89	77	73	107	62	89	66	110	43
TTTGTGTGCAGGTTCT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TATAGGGCCTATCTAG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TCCTGTTCGCCCGAGG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GGCCATCATTTTCCCC	alt_5655_new	7	19	16	11	8	6	19	10	18	12
GTAACCGTCGGAGTGT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GCTGTTTCTCATCGAA	alt_5655_new	0	0	0	0	0	0	0	0	0	0
AGGCCAGAGGGTAGAT	alt_5655_new	18	33	22	5	18	10	31	17	33	19
TTTGATGTCTGAACAG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GTTTCAGCAGCCTCGT	alt_5655_new	24	17	29	22	17	17	25	24	17	20
TCAGGACCATCCACTT	alt_5655_new	12	26	14	9	25	13	16	10	33	8
AAGTCGCTTCACGCCC	alt_5655_new	24	43	39	28	51	22	63	28	61	23
GGAGAGGCCAAAGCAC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
CTGATACGATGCATAT	alt_5655_new	6	11	2	4	7	10	5	3	15	1
GACTGGCGGTTGTCGG	alt_5655_new	32	30	31	27	54	23	58	31	48	14
CGTTGACTCGTCTCGC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GCTTTGAGGACTCACC	alt_5655_new	3	10	2	1	12	1	7	3	11	3
TAAATCCTGTAGTCTA	alt_5655_new	1	3	1	6	7	1	5	0	3	0
TCTCTGCATTCCTCCC	alt_5655_new	16	25	11	14	28	21	31	6	25	11
TGGTAATCGATTAGCA	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GTAGGCCTTTATTATG	alt_5655_new	21	32	33	20	30	26	49	17	45	21
CGGAGACCCAAGTATG	alt_5655_new	38	51	41	52	58	40	57	36	60	38
GGGTTGGCATAGCGGT	alt_5655_new	6	11	4	1	19	3	7	8	10	7
TGTATGGAATACACGG	alt_5655_new	24	25	23	14	27	8	33	11	31	13
ATAATACAAGTTCGCA	alt_5655_new	1	3	4	5	5	3	9	3	8	8
CTTCCTGCGATTTTTC	alt_5655_new	0	0	1	0	0	0	0	0	0	0
GCGCTTCGTACGCTCG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
CGCCTGAATTCTTTCC	alt_5655_new	6	6	4	12	11	9	8	11	10	5
GTTCGGGCTGGTACCC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GCTTGATTGAGCTGCC	alt_5655_new	2	7	3	4	5	4	5	5	6	7
TCCCAGGACGCATGTG	alt_5655_new	9	52	23	14	31	14	47	14	59	19
TGATATTTCTAGAACA	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GCTCTACATACGAGGC	alt_5655_new	20	43	27	21	35	26	43	21	48	20
CACGTTGTTTCGGAAA	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TTAAGAAAGCCGAGCT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TGCCTCGGGTACAGGG	alt_5655_new	31	54	44	29	47	36	58	27	48	23
ACTCATGTAATTATAG	alt_5655_new	29	46	31	26	50	30	55	20	46	20
ACTTATGGTCCCCTTA	alt_5655_new	3	6	9	2	4	2	2	3	4	0
CTGAGTACTCCGCTAG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GCTCCAGGGTCCATCA	alt_5655_new	23	35	22	19	44	31	42	13	45	23
CAATCAATTGACATCA	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GGTACTCGGGTTATAA	alt_5655_new	7	15	3	5	9	10	11	6	16	4
AGACGGTGTTTGTTCG	alt_5655_new	17	21	17	20	35	22	26	10	27	18
TATTGAAGCAAGGGGC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TCACGTAGACGCTACC	alt_5655_new	4	28	11	16	23	5	31	14	22	15
CCAGTTTCGTGGTGCA	alt_5655_new	4	5	4	1	1	2	5	3	5	1
CTGCTCTTTATCTAAA	alt_5655_new	0	0	0	0	0	1	0	0	0	0
TGGTACATGTATCCCT	alt_5655_new	19	25	17	9	25	25	33	13	37	21
AGAAAAGCGTGGACTT	alt_5655_new	10	13	10	6	11	9	15	10	18	6
AATATTTGGCTTTAGT	alt_5655_new	20	35	40	24	33	23	48	17	49	32
ATTTTGTGATGGTCTG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GTCACATTCCAGACGA	alt_5655_new	6	14	13	4	18	13	18	7	15	8
TCTTGCGTACCGCCGT	alt_5655_new	7	24	16	15	21	7	29	10	29	11
CTGGCCGCCTACACTA	alt_5655_new	6	10	4	2	14	2	17	1	7	4
ACCATGACTTGTATTG	alt_5655_new	6	21	15	7	18	7	17	9	23	3
ACCGCTACCATCTGAT	alt_5655_new	13	21	9	6	19	18	24	14	22	6
ACGTGGTACCCATTAG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
ATCCTGACCGGTTACC	alt_5655_new	6	6	6	9	7	2	7	6	11	3
CTTCCTCATTGTGTTC	alt_5655_new	65	121	83	88	121	63	115	72	122	71
GCCCGTGCTGCACTCC	alt_5655_new	38	37	24	26	36	17	35	17	25	27
AACCCGCGGTAATGCC	alt_5655_new	9	12	8	5	11	7	7	9	8	5
TCGTGTCATTCGGAGA	alt_5655_new	0	0	0	0	0	0	0	0	0	0
TTTTCTAAGACGAGTT	alt_5655_new	22	27	28	20	38	16	44	17	41	14
TTCGCCAGGTATGTCT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
ATACTCACGTCTATCC	alt_5655_new	14	29	19	7	33	12	50	13	35	5
GTTAGTCTACGACAAG	alt_5655_new	0	0	0	0	0	0	0	0	0	0
GTACTCTCGGCACCAT	alt_5655_new	0	0	0	0	0	0	0	0	0	0
ATCATATTACGTGCTC	alt_5655_new	12	17	8	10	25	2	10	11	18	5
CAAGTCCGTGCGGCTC	alt_5655_new	45	88	70	64	97	63	69	47	86	55
ATCTGTTAGACAACAG	alt_5655_new	52	66	54	38	93	56	72	51	89	48
CCTGCCATCTAGCCTC	alt_5655_new	4	34	7	8	50	6	45	10	39	8
AAGCGTTAGCATACGC	alt_5655_new	0	0	0	0	0	0	0	0	0	0
AAGAGTAGTATCTGCC	alt_5655_new	39	51	42	31	48	33	48	26	70	22
TCCTATCACATTTGCC	alt_5655_new	52	96	75	54	87	43	108	52	90	46
AACGATCTGGTCCTTG	alt_5655_new	29	42	28	28	35	24	47	13	54	23
TTCTCGTTCTTTAGCT	alt_5655_new	10	28	20	25	41	23	33	18	34	18
GGAGTTTGCATCCGTA	alt_5655_new	2	4	6	2	0	1	0	1	4	0
GGTGGGGGTATAAGGC	alt_5655_new	55	76	56	56	105	40	102	41	98	55
CACAGTAGACTACGGC	alt_5655_new	46	77	61	34	78	41	87	47	86	30
GCAGCGCTTACGTATT	alt_13_upstream	39	15	50	44	24	32	21	42	18	31
AGGTAGCTCCGTCGTT	alt_13_upstream	69	29	64	55	22	54	24	52	27	50
CATAAGGACTCTGAGT	alt_13_upstream	205	79	200	192	71	173	94	151	100	166
TAGGGATGCTTCCGTC	alt_13_upstream	76	27	97	75	32	70	20	78	31	57
GGCGAATAAAGCACTC	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GCTATTACATGTGGCC	alt_13_upstream	35	12	47	47	9	50	8	36	16	30
CACGTATATTTATCTG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
TGATATCCGTTTTTAT	alt_13_upstream	184	47	224	197	49	162	40	154	42	130
AACTTTGAGTAGCATT	alt_13_upstream	132	49	176	124	43	135	59	115	56	92
ACCAAACACGTTCGCT	alt_13_upstream	36	10	35	26	22	16	25	39	15	37
TTTCGCAGACGGTGCC	alt_13_upstream	264	102	302	259	105	226	94	240	118	230
ATTGTTGAACACGCCC	alt_13_upstream	29	17	45	24	20	39	12	51	19	35
CTATAGTTAATTTCTG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GGAGATTACGCTCTAA	alt_13_upstream	31	10	40	27	14	47	11	36	17	29
GGATCATTCCATCTTT	alt_13_upstream	52	27	84	88	22	83	32	60	28	72
CCCGAGGCGAGTTTTG	alt_13_upstream	121	39	139	140	50	116	50	136	42	116
AGCATCCGTCATTTCG	alt_13_upstream	16	5	22	17	14	19	7	15	14	16
TTGAAGCCTATCTCTT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CCACTCCGGTAAACGT	alt_13_upstream	35	58	36	36	75	27	65	37	54	36
ATATTCTTTTACGTTA	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CAGATATACTCACCCA	alt_13_upstream	40	64	64	40	71	43	78	40	100	50
AGAGCCCGTAGATGCG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGCTGACCATTGC	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
ACAACTCTCGTATCGG	alt_13_upstream	400	126	435	414	148	310	111	380	146	333
CTTACATAACGGTTTT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CAAACAATTATTGTTT	alt_13_upstream	62	31	87	67	29	58	26	62	24	34
TATTTGCGTCGATCTG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
ATGTCGTCCGGTTATG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGTGAATATTAGA	alt_13_upstream	41	5	37	44	10	43	14	49	16	35
CAAGGTAGTTATCTAT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GATTGGACCATTGGAG	alt_13_upstream	23	13	38	39	22	30	10	33	10	15
CTCGATATTCCAGATT	alt_13_upstream	10	4	14	8	3	10	7	8	4	4
CTTAAGAGCTTGTCTT	alt_13_upstream	201	78	209	211	71	175	81	196	87	178
CTGTGGTTAGTTCTTT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CTTAATCACAAGCATC	alt_13_upstream	148	57	174	203	52	128	83	148	74	133
TGGATCAATTCTGTTT	alt_13_upstream	20	4	21	23	4	12	8	22	8	3
CCGCATCTCCTAATCG	alt_13_upstream	66	50	91	77	38	51	30	64	44	54
GCAGGAGGTTTCCGTG	alt_13_upstream	103	58	122	96	69	84	59	129	48	94
ACTTGTCATGGACTGT	alt_13_upstream	106	44	101	97	34	75	37	89	40	82
TGCTATGCGTCCTTTG	alt_13_upstream	71	30	65	77	18	56	24	52	25	48
ATAGATTACGCATCTA	alt_13_upstream	77	18	98	82	33	86	39	84	46	65
AACCGTGCGATGGTAT	alt_13_upstream	447	239	496	497	233	423	273	449	255	387
AGGACGTGTATTTCCA	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTTTTTTGATTTC	alt_13_upstream	16	2	14	4	3	10	4	10	2	5
AAGGTTCTTTCGGAGC	alt_13_upstream	192	100	261	178	113	198	97	187	87	149
CTTTGGATAAGGAACA	alt_13_upstream	239	110	312	231	98	218	109	237	91	189
GGGTCCGGCTACGTCG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGTACTATGGGTT	alt_13_upstream	71	28	81	53	24	58	24	42	32	48
TCGAGTTGCTCCGTCG	alt_13_upstream	68	24	60	75	29	64	21	44	29	54
GCCAAGATGTACAGGG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
ATACTTTAGCTCAAAA	alt_13_upstream	129	43	172	149	63	136	42	148	65	112
GCGCTCTAGAACAGTT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CTTATCATCGAAGGTG	alt_13_upstream	62	14	79	59	29	47	43	54	33	49
AAGGTTCCTTCTTCCT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTTTAGTGTTGGC	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
TCGGCCTCTGTGCATT	alt_13_upstream	110	82	178	134	80	114	85	112	90	127
GTCGGCGGGTTAATGT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CGACGTCTTTTCAAGA	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
TTCACGATTGAAGTCA	alt_13_upstream	96	52	145	105	50	89	38	106	47	86
GTGACTCTATCATGTT	alt_13_upstream	33	17	59	29	18	40	18	32	15	34
TTTTGGGTGGCTATCG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGTCTTTCGAAA	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CGTACGTGTTCTCAAT	alt_13_upstream	171	105	282	248	100	220	113	179	93	178
TTAAATCATGCTTAGC	alt_13_upstream	479	210	681	571	237	474	277	485	234	479
ATAGCATATTCTTTTA	alt_13_upstream	260	86	302	281	99	235	79	242	74	241
ATGGCGAATCTTATTC	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCGTGCCGCCATG	alt_13_upstream	22	12	46	34	7	31	12	29	20	29
CTTAGTTGTCCCCATT	alt_13_upstream	48	28	69	55	21	48	13	53	14	40
GACAAAACGACCTCTC	alt_13_upstream	245	85	267	232	72	183	81	196	70	210
GCATGGTGGAAGACCT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTTAGGGTTCGTA	alt_13_upstream	29	15	38	33	5	32	20	18	15	23
ATTCAAAAACCTGACC	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGTCATAATGCCA	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
AGAGACCGTAGATGCG	alt_13_upstream	517	219	631	550	183	498	194	474	206	415
ATGATCGGAGGTAACT	alt_13_upstream	144	94	190	204	94	175	101	156	89	150
TTATCATTTGGTATCA	alt_13_upstream	115	55	130	113	37	112	44	70	58	105
AGCCTTTATGTTTCCT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCTTTCACAGCTT	alt_13_upstream	209	75	236	231	101	192	92	203	100	172
CGCCTGCCTTATATCC	alt_13_upstream	16	7	23	12	11	18	4	16	9	20
ATTCAGTATCGCTCCG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
TACTGTTCGCTCTGCC	alt_13_upstream	109	62	131	123	64	77	59	101	58	107
GAAGGTGGGGTCTAGA	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
TTATTGCCCCAACCTT	alt_13_upstream	71	40	92	81	40	62	37	81	31	47
GTTGTATGGGAAATGC	alt_13_upstream	105	50	149	152	53	107	54	115	41	126
GTTTTCCTGCTCAACA	alt_13_upstream	146	80	206	170	79	155	90	161	64	155
TGCTGGCGGAAATTGT	alt_13_upstream	232	94	291	248	72	197	100	210	100	182
TTAAGCCGTCTGCGTG	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
ATGTACCGTTTAAACC	alt_13_upstream	295	107	362	324	141	280	133	265	116	268
GCATACCAGCCGCTTA	alt_13_upstream	112	57	144	129	51	111	63	91	42	91
TGCTTACAGTTCTTAT	alt_13_upstream	100	54	160	105	39	101	45	105	34	80
GGGGTCCAATAACTTT	alt_13_upstream	190	42	206	222	62	156	63	162	75	142
ACTTGGCGATCACTGC	alt_13_upstream	126	57	163	153	55	97	70	110	34	120
TTTCAGTATCGCTCCG	alt_13_upstream	64	14	43	49	22	41	24	41	19	34
GGGAGGTACCAGGACT	alt_13_upstream	0	0	0	0	0	0	0	0	0	0
AATCAGTCCATCTCCC	alt_13_upstream	2	52	6	5	37	5	42	6	39	2
ACACTAACTTGGCTGA	alt_13_upstream	15	8	34	32	13	21	12	29	8	27
GTCAACGTTTGGGTGG	alt_13_upstream	18	12	36	27	18	22	11	23	13	28
TAATAGTTCTGGTCTT	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTCTATTACTTTT	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGACAAGCTCTTC	ref_4486_fdr	49	38	51	40	28	48	33	41	29	37
ATCCTTTGGCAATGTT	ref_4486_fdr	220	150	198	162	166	170	168	175	180	167
ACCTAAGAAGCGGCTA	ref_4486_fdr	10	8	19	23	13	15	8	7	8	12
TGGTCTTCTAAAGTAA	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
GTTTACTTGATAAACT	ref_4486_fdr	29	19	34	27	17	17	22	19	24	30
ATGTTTAACTGCTCGC	ref_4486_fdr	70	45	91	61	60	60	53	58	53	65
ATGAATCGATCACCTA	ref_4486_fdr	6	6	25	9	12	16	7	10	21	9
TCGGCAGTTTGGCCTT	ref_4486_fdr	62	56	60	50	42	57	53	58	60	66
TTTTAATGGGCAAAAT	ref_4486_fdr	20	35	37	30	37	27	55	22	59	16
GACCAATTACTAGGTG	ref_4486_fdr	126	67	132	85	104	87	78	79	100	98
GGAATCTGCCGACCAA	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTTAAATGTTTAT	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAGGCTGCCGCGT	ref_4486_fdr	55	46	74	54	41	59	40	54	40	64
GGGTATGGCAGTTGCA	ref_4486_fdr	135	103	156	127	115	121	97	109	104	127
CACTATAGTACGATCC	ref_4486_fdr	132	112	161	119	121	133	118	112	143	110
TAATGCTTCCTGGGTT	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
GCAATTGGTGTCCATT	ref_4486_fdr	22	6	17	19	13	10	6	15	10	10
GGCTAGGTATCTCGTA	ref_4486_fdr	25	15	27	16	25	17	15	29	9	22
ACCACCGTTCGTCACT	ref_4486_fdr	45	33	40	28	24	35	33	26	28	40
CATCAGCCAATTGGCA	ref_4486_fdr	192	169	229	164	146	152	165	146	187	172
CCCAGCTGTCCTTGCG	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTATAGATCCAGC	ref_4486_fdr	56	48	68	47	22	58	25	49	40	50
CGAGTATGTTTTCGGG	ref_4486_fdr	64	48	76	72	56	69	59	54	60	46
GTGTATCACTCGTCCC	ref_4486_fdr	25	12	22	9	20	14	19	20	12	5
GTAGCTGGGGAGCGCC	ref_4486_fdr	15	15	25	14	19	18	16	26	24	15
AGGGTTAGTTCAAATC	ref_4486_fdr	169	109	196	147	146	162	108	107	132	160
CCAGAAACCATATTTA	ref_4486_fdr	4	29	12	5	35	10	40	9	22	5
TTCTTTCCCCCGTCAT	ref_4486_fdr	11	22	23	12	37	16	29	21	35	17
GGACTGAGGGTTTCAC	ref_4486_fdr	26	26	30	27	30	24	20	32	33	36
GGTCATCCGAAAGATT	ref_4486_fdr	4	7	11	4	7	3	3	7	10	7
GCCGGATGCGTTAGGC	ref_4486_fdr	10	10	17	10	15	10	17	13	8	12
GGCCGTCCTCAGAACG	ref_4486_fdr	64	33	55	50	42	54	48	48	49	48
GCCTTATCAGACGCCT	ref_4486_fdr	5	7	8	10	6	1	5	2	8	8
TTTCTGCGGGTTATGT	ref_4486_fdr	120	63	113	67	72	91	82	110	72	82
ACTCGTTTTGGTGATG	ref_4486_fdr	43	43	48	33	49	32	31	38	46	41
AGCATATTCACGCCCA	ref_4486_fdr	74	57	71	60	66	65	59	50	43	60
CTTTAATGCCGGTGGA	ref_4486_fdr	32	27	35	28	32	29	20	16	32	27
TTCGTAAATTTGGAGT	ref_4486_fdr	21	10	30	24	28	27	24	25	11	21
GTGGGTGGCAGTCTGA	ref_4486_fdr	35	29	41	31	25	39	26	45	35	36
CTAACGTCGGCAAGAG	ref_4486_fdr	21	18	29	19	18	24	24	24	29	21
TCTACGTTTCTTTGTC	ref_4486_fdr	40	29	64	47	37	38	38	45	46	32
GCACACGCGGGTACCC	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCAGTGGCGGTTT	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
CGACCAGTTGAACTCG	ref_4486_fdr	0	0	0	0	0	0	0	0	0	0
TAGACATCTTCCCTAC	ref_964_reverse	117	77	140	145	78	142	71	128	82	136
AGACTGATTTAGTAAC	ref_964_reverse	31	19	35	24	13	33	15	21	19	26
ATGAGATGTCGTAGTC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
ACTAGGTATCCTCGGG	ref_964_reverse	88	82	98	83	69	69	60	84	62	66
GTAGGAGGCCGTTTAT	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCCATGATATGGG	ref_964_reverse	171	102	211	181	130	162	123	132	131	128
CCATAACGAAGGCGCA	ref_964_reverse	111	79	107	126	70	105	85	102	69	105
GCAGAAAATTAATAAA	ref_964_reverse	24	18	57	34	19	35	21	24	23	13
TTGATTTAGCCCCACG	ref_964_reverse	158	70	199	146	90	150	66	166	80	144
CAAGTCAGCACGCATC	ref_964_reverse	60	37	71	75	37	54	51	76	51	85
CAAGGCGGACCCGCGG	ref_964_reverse	28	13	29	34	28	36	16	22	26	23
ATATCTAAGGCAGCGT	ref_964_reverse	172	87	209	190	117	145	127	175	100	162
TTCTTGCCGACGTACC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
GTATCAAGCGTTATGC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
ACTAGCTGTCAAACAC	ref_964_reverse	271	216	331	288	214	279	206	262	228	253
GGGAGTCTCTTCAGTC	ref_964_reverse	122	61	146	139	81	139	78	115	107	108
ACGGCCTAGGCGACTA	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTATCACTCGGT	ref_964_reverse	42	31	58	40	26	48	31	37	20	36
TCCCTTGCACAAAGTT	ref_964_reverse	36	17	48	24	22	22	30	37	16	29
CGTATGTTATTCACAG	ref_964_reverse	138	91	163	164	84	141	94	129	110	121
GCGCGATCTCCAAGTT	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
ATAATATCGCTATAGG	ref_964_reverse	5	1	7	3	4	6	4	2	2	3
TATTTATCTAGAACAG	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CGTACACCTCTCAGGA	ref_964_reverse	38	22	59	57	32	41	27	43	36	39
GGGACCATCCTGTAGA	ref_964_reverse	31	20	42	39	19	24	17	28	18	24
TAGCATTCTGGGGTTT	ref_964_reverse	99	70	124	85	79	83	58	72	82	69
TAACTCAGTCACGGTC	ref_964_reverse	4	2	3	1	6	0	2	1	2	1
CAATGGCACTAATCTT	ref_964_reverse	57	52	73	69	28	72	35	67	31	51
AATGCATCTGGACACC	ref_964_reverse	83	52	141	143	60	105	53	114	72	88
TAGCCCTGAACCGGCT	ref_964_reverse	152	94	171	147	91	157	128	157	99	127
CTATGACACATTATTT	ref_964_reverse	101	54	146	105	79	99	71	130	64	116
CGCGTATAGTTTTCGG	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTCCTCTCGATTC	ref_964_reverse	207	131	292	262	142	213	142	221	126	210
TCCCCCGGGTCTATGC	ref_964_reverse	46	98	54	46	95	35	108	41	121	38
GCTCTTTTACGCATCA	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTGTTAGGTCGCC	ref_964_reverse	19	13	22	29	22	17	14	24	14	24
AAGGTATTCATATCGT	ref_964_reverse	18	8	25	16	18	9	5	15	12	7
AACACAGTACTGAAGA	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
ATACCTTTTCACCCAG	ref_964_reverse	37	21	40	57	29	48	29	41	21	30
GGTCTGTATCCATCAG	ref_964_reverse	357	280	415	369	283	306	284	317	260	327
TGAAATTCGTCTGCTC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
TCCGCCTACAGCCCCG	ref_964_reverse	6	2	5	4	3	8	0	3	1	6
CCCTTCGTCCCATAAT	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCGTAGCCTAGCG	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CACGGCATGAACATCC	ref_964_reverse	47	24	56	46	26	39	24	68	22	28
AGCTGTCGTTATTGCA	ref_964_reverse	17	10	11	15	8	8	6	4	9	6
CCCTACTGCACTACTC	ref_964_reverse	18	16	29	25	16	19	19	22	21	12
CACACACTGAAATCGA	ref_964_reverse	78	58	121	79	66	90	50	86	56	73
TAGCTCTAACGCGAAG	ref_964_reverse	47	32	41	41	46	49	52	50	48	46
AACTTGCAGCTTTTTA	ref_964_reverse	50	31	46	50	39	47	51	44	34	51
GGGCTCTGAAGCGTGT	ref_964_reverse	43	18	34	25	26	35	21	30	25	21
TACGTATGTTTCGTGA	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
ATAGGAGAAAGTACAC	ref_964_reverse	23	14	15	16	8	14	20	6	19	11
TCTACCAGCACTATAT	ref_964_reverse	53	50	87	79	32	62	34	59	40	38
CTCACTTCGAGATGTC	ref_964_reverse	36	7	26	27	10	20	12	25	11	10
CTACTATGTGAAGAGT	ref_964_reverse	12	14	21	25	9	10	14	11	15	11
CATGTTAAGTGGACGG	ref_964_reverse	38	26	53	60	49	47	37	36	31	38
TTATACACACCAAATG	ref_964_reverse	46	36	44	38	31	45	28	29	36	25
CTAGAAGTATTATGAG	ref_964_reverse	43	36	60	57	39	51	35	37	43	44
GAAACACATCGGTCGA	ref_964_reverse	6	3	6	5	7	3	4	8	3	7
AGAAGCGAACCAATTA	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CCGTCAACGTATCATC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTCGGTCAAGGC	ref_964_reverse	29	50	46	47	46	44	58	36	60	46
CGCCGCCGCAACTTCT	ref_964_reverse	12	10	14	9	3	6	3	4	4	7
GATGGTCAAGATTACC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCAAAGCGCGAAG	ref_964_reverse	17	8	26	24	7	31	22	15	14	20
GCGGTGGTTATACATT	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTTTGGTTAATGC	ref_964_reverse	83	59	108	98	51	100	56	86	70	85
CTCAGGATGCACCCGT	ref_964_reverse	162	96	181	129	79	134	106	170	100	129
GCCGGTTTGGCAATAT	ref_964_reverse	35	22	49	36	24	30	31	25	24	47
TCTTTAACATCAGGGC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CGACATATGGGAGTGC	ref_964_reverse	92	66	112	87	63	90	74	79	60	81
GTCGTGTTTGCCGGGT	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTTTCTGGCTTCC	ref_964_reverse	14	13	30	22	6	21	18	7	12	15
TGCATGAACTTTTCGC	ref_964_reverse	10	9	8	5	2	12	2	7	7	5
GACAGGCGCTCTGTTA	ref_964_reverse	7	9	20	6	4	3	13	7	6	13
GTATTCCGTTGGCGAC	ref_964_reverse	89	49	126	99	64	114	64	76	61	78
TGAGTGGTTACCATTG	ref_964_reverse	31	31	42	59	36	48	24	37	36	36
CGCTCGCGTCTCATAG	ref_964_reverse	70	76	93	93	60	86	66	95	58	68
AGTGTTTTATCATCGA	ref_964_reverse	19	7	12	14	6	15	12	19	8	13
AGGTGGGTGCAAGTCT	ref_964_reverse	27	21	23	27	10	15	20	22	9	26
TAAGCTTTCTTTATGC	ref_964_reverse	58	37	66	63	33	46	27	44	51	44
TATCAGTCCCTGGACG	ref_964_reverse	40	28	68	47	49	52	51	61	43	52
AACACACGCTTTTTCA	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
GATACCGACGCGATCC	ref_964_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGTGGCTAATTAA	ref_964_reverse	34	23	33	24	14	31	22	27	19	28
ATCTCTGACCCCACTT	ref_964_reverse	137	92	136	143	120	118	73	144	68	133
CACAATATTATGCCCT	ref_964_reverse	12	22	33	22	21	25	24	16	26	29
GACTCTGGCCCAGCCC	ref_964_reverse	18	9	31	20	14	26	16	14	13	21
GTACATTTGTTCACGC	alt_2031_reverse	56	89	74	51	111	35	119	78	132	45
TTGCTCGTGTGCAAAT	alt_2031_reverse	8	12	11	11	16	2	21	4	11	9
GCCGTTTAAGCCACCC	alt_2031_reverse	46	63	57	53	81	32	56	36	83	37
ATTGGTCGTCGATCTT	alt_2031_reverse	63	96	76	68	87	57	97	72	101	59
TGCTGGCATATATGCA	alt_2031_reverse	22	48	39	17	49	25	49	31	60	26
TTTATTTGATAATGAG	alt_2031_reverse	10	27	23	21	34	15	29	21	23	24
GAGTATCGGTGTTAGT	alt_2031_reverse	42	83	56	49	97	42	102	36	84	42
CTCTATACCCGGTTTG	alt_2031_reverse	5	8	6	7	4	6	10	1	15	1
GCACTTGTTCAGCCTG	alt_2031_reverse	17	44	14	12	40	12	29	19	33	21
CCTCGTACCATTTGTC	alt_2031_reverse	7	10	8	5	13	2	9	4	10	5
TTCAACCGGACCGTCT	alt_2031_reverse	44	126	87	50	99	58	104	55	104	39
CCGTATGGGGCCCCGG	alt_2031_reverse	14	14	9	13	24	13	16	16	26	19
TATTTGTTTGTTACGT	alt_2031_reverse	62	103	69	58	77	55	102	29	120	46
GCGTACGGCCGATGAG	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTCGCAATCGAAA	alt_2031_reverse	124	218	169	138	213	124	239	155	280	122
CACCGCATCCCCTTGA	alt_2031_reverse	1	1	3	1	0	2	2	1	4	3
GTTTCCAGTTCTGGTT	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCCTTCAACTGTG	alt_2031_reverse	22	48	22	15	49	18	45	21	54	13
GCTCAAAGTCAGCTTG	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
TCGCTCCCAGGATAAA	alt_2031_reverse	10	33	7	8	31	10	27	20	46	9
TGACAAGAAATGCCAT	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTGTATGATCTAA	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
GACTTGATCTCTGCCC	alt_2031_reverse	2	3	5	2	2	0	8	2	2	1
AATACGGCTTTGTCAA	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGCAATGAGAACG	alt_2031_reverse	150	222	167	137	229	129	216	115	239	126
CTTTTCACTGATCCTT	alt_2031_reverse	9	20	21	18	21	8	19	14	17	9
GCCTAGTGGACGTCAG	alt_2031_reverse	17	59	45	32	59	33	57	22	66	27
TGGCCCATTAACGTTT	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTGTATGGTGTTT	alt_2031_reverse	47	58	37	33	49	32	50	21	62	31
GCAATTCGCTCTTGCC	alt_2031_reverse	5	9	3	7	16	7	9	6	7	0
TGAGGGATGACTGCGC	alt_2031_reverse	34	61	47	33	59	44	54	30	77	33
GGTTGAATTCGATGCG	alt_2031_reverse	18	37	24	35	35	30	34	20	38	22
CCTACGGTCCGTTCTG	alt_2031_reverse	16	65	29	28	64	19	58	22	89	14
CATCAGGAATATTAAT	alt_2031_reverse	47	41	45	26	59	37	69	24	71	23
TGAATCTTGTCTTACA	alt_2031_reverse	4	6	9	1	2	6	5	6	1	5
GATCAGCTGATTGCTA	alt_2031_reverse	0	9	5	10	7	4	9	5	9	5
ATCCCCGCCGGTCGCG	alt_2031_reverse	2	23	7	4	19	4	24	2	24	2
AGCAGCGGCTGCTTTA	alt_2031_reverse	15	17	25	11	37	19	21	11	21	11
GTTTGGGTGGCTGTAC	alt_2031_reverse	32	65	26	42	58	38	58	33	61	20
CCCTCTCAACCCTCTA	alt_2031_reverse	45	56	69	63	70	55	88	36	97	41
CCCGTCTGCTCAATAA	alt_2031_reverse	67	149	101	86	134	56	182	63	157	72
TCGGAGACGCGGCCGA	alt_2031_reverse	24	47	40	31	46	30	57	34	72	35
ATCGTGAAGGCAGGGC	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
TTGCAAGCGTTTTCGA	alt_2031_reverse	4	6	0	3	7	1	7	4	13	6
AGTACTCAGAATTTCC	alt_2031_reverse	21	25	26	18	38	18	24	14	28	11
TTATAGCACATTTGCT	alt_2031_reverse	23	20	21	14	27	22	40	13	32	8
TGCTCTCCACCTCGCA	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
ACAATTTGGACATCGC	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
AATTGTAGCCAACGTG	alt_2031_reverse	5	11	3	5	6	7	13	11	13	5
TTAGATGGTCCGGGCA	alt_2031_reverse	26	37	26	34	39	27	45	25	36	40
GCTAACATCTGGTACT	alt_2031_reverse	1	3	6	2	9	5	8	4	4	9
AAGATTTGTTTATTGC	alt_2031_reverse	41	52	42	32	37	38	52	30	59	26
AAGCAACCACCGGCTG	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGCACACACCCAC	alt_2031_reverse	13	42	20	31	45	18	37	15	35	14
GCCTTTACGTCCATCC	alt_2031_reverse	21	30	25	25	39	22	39	16	37	14
TTCGTGTCCTGGGAGG	alt_2031_reverse	21	47	36	29	58	19	67	34	57	29
TTGGAAAAGTCTTCTG	alt_2031_reverse	47	79	41	47	85	44	95	41	117	45
TCTTTTTTCATCTTTT	alt_2031_reverse	58	64	62	86	63	53	83	51	83	38
CTGTAAACAGCTTCAT	alt_2031_reverse	39	83	64	42	72	46	87	36	89	39
CCGCAGATGTTTATCT	alt_2031_reverse	54	118	76	55	101	61	137	36	110	50
GGTGTGGCATTATGTT	alt_2031_reverse	23	60	56	33	59	43	52	27	54	34
TAATCGATCACTCCCA	alt_2031_reverse	94	153	84	70	190	62	185	71	183	75
AATGGGAGATTTGCAA	alt_2031_reverse	12	14	5	8	21	6	20	5	18	8
GCTAGATAAATTTTTT	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTAAGTTCAACTC	alt_2031_reverse	19	75	14	24	97	19	101	22	89	20
TCCCCGGTCTATTAAA	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
CTCGCTCAGGCGTTTC	alt_2031_reverse	198	302	236	172	330	163	335	169	358	168
CCATACCGCGACACGG	alt_2031_reverse	4	3	0	2	4	3	7	3	3	1
ATACTTCACGGCATTC	alt_2031_reverse	1	7	0	2	3	2	0	2	4	3
CGCCCTCGTGTGCAAG	alt_2031_reverse	25	40	34	20	24	15	22	11	50	20
TGCCGAGGGGGACCAT	alt_2031_reverse	13	18	21	20	21	16	18	12	19	8
GGTTTCAGAGAGTAGG	alt_2031_reverse	50	110	89	68	95	63	105	71	120	71
AAGCATCCACCGGCTG	alt_2031_reverse	77	104	92	60	109	70	102	68	133	71
AGTAGCAACCCGTGGG	alt_2031_reverse	51	91	95	57	136	56	115	51	124	65
GTAGTCCTCCTTTTCC	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTACTATCCTCAT	alt_2031_reverse	7	5	5	8	5	3	10	3	4	6
CCAATTGTACAGGATT	alt_2031_reverse	34	40	35	23	40	15	59	30	37	15
CGGCTTTCTAGTGGCC	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGCCTTATTCACA	alt_2031_reverse	29	91	43	37	98	22	93	42	113	22
TGTACATTTCTCTCGT	alt_2031_reverse	11	25	24	27	26	16	28	19	40	14
ATAAGTATTAGCGGGT	alt_2031_reverse	16	25	18	17	31	18	30	13	39	17
CGTCGGACTTAGTTAA	alt_2031_reverse	0	0	0	0	0	0	0	0	0	0
CTCAATGCATTCCCGC	ref_5674_new	64	45	59	75	57	48	55	46	66	53
AACGTGTGAGCTGTGT	ref_5674_new	37	45	45	41	54	40	51	35	51	42
CTCCTGGGCCCACCGT	ref_5674_new	46	45	66	41	56	32	60	43	44	40
TGATTAGACGCACCCT	ref_5674_new	62	65	55	52	50	45	59	42	55	51
CGCCTGTAAGCACCTG	ref_5674_new	26	25	38	35	57	37	37	27	37	20
CTAGCTATATTCGAGT	ref_5674_new	74	101	77	71	92	54	105	69	117	65
TTTCGTGTCCGCGTTA	ref_5674_new	64	48	49	42	57	43	64	31	58	40
ATCAAAAAAGTACTCA	ref_5674_new	1	10	1	1	18	1	14	0	9	1
CTTCTCCTAGGGCTAT	ref_5674_new	16	24	26	27	27	30	35	20	30	17
GACCCGGCTCATTAAT	ref_5674_new	45	50	44	54	52	41	53	24	49	38
TGCAGTATCCTTTCTA	ref_5674_new	39	51	48	36	39	37	40	46	48	39
GGCTGTTCCCGTTAGC	ref_5674_new	34	40	42	37	53	27	38	34	37	40
CGGCTTAGTATCAACT	ref_5674_new	154	142	197	188	187	161	176	169	171	151
CTTGTCACAATCGTAC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TTGCTATTAATACTTT	ref_5674_new	29	41	43	34	51	31	34	26	48	32
GCCATTGCGCGGGACG	ref_5674_new	60	54	77	60	49	51	63	56	55	58
TGTCTAACTCGTCTTG	ref_5674_new	13	15	14	16	20	12	15	16	14	8
TAAATGGTTTTCGGTC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TATCCGGATAGCATGT	ref_5674_new	1	3	1	2	2	4	0	2	3	0
CCTTGAATCCAATGAA	ref_5674_new	39	41	60	49	51	52	56	41	48	37
CTACCTAACTTCGTTC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
GCGGTGTGATACGCGA	ref_5674_new	60	71	77	65	69	59	93	42	74	39
GTCCGAACAAGTTATC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
CATTGTGTTGCCGCAT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TGTATGTAGTGGTCAT	ref_5674_new	7	2	5	6	8	5	10	3	6	5
TCTTTGTTTTACCGGT	ref_5674_new	8	19	15	10	10	12	21	12	11	9
GCGCGCTTTCTTCCCT	ref_5674_new	35	44	38	32	30	36	35	15	34	32
TTCCCAGATAGCGAAT	ref_5674_new	12	21	9	16	12	12	16	11	15	10
TTTTTGTGTCCACCGT	ref_5674_new	31	40	56	35	59	31	48	38	53	38
TTGTTTTTGACGTTTA	ref_5674_new	174	252	258	203	209	198	303	133	282	187
GCGCCATTTCAGTCGA	ref_5674_new	11	7	14	9	10	16	10	5	7	5
CAGCTTGTCGCTACGC	ref_5674_new	25	48	43	28	43	43	42	39	44	24
TCCTTCGTGCTGGTGT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
GACATTTAGCCATCTT	ref_5674_new	46	58	40	40	38	35	53	35	56	50
TTTGGTCCCCCGGATT	ref_5674_new	29	25	28	30	31	29	37	28	22	21
TTGCTATCGAATTGAG	ref_5674_new	107	106	136	92	97	94	90	75	112	67
GGTATGACTCTAGGGT	ref_5674_new	48	72	63	45	83	46	67	55	92	69
ACGGGTCGGCAGTGCT	ref_5674_new	9	13	11	8	5	8	13	10	10	11
CCCATCTTTCTTACAA	ref_5674_new	1	6	3	3	5	7	3	2	7	2
ACTTACTCTGTCATGC	ref_5674_new	59	88	66	51	92	56	74	55	101	45
GTATGTTGATGCTTCC	ref_5674_new	76	87	91	74	86	81	102	66	105	48
AACGGTCCTGTATGCC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TTATATTTCCTGTTTT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TGTTCCCAAGGACACG	ref_5674_new	0	0	0	0	0	0	0	0	0	0
AGATTTCTCGAAATTC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
ATCGTTACCCTGCGTA	ref_5674_new	5	7	8	2	9	5	6	7	10	3
CTTGATTACAATTTGG	ref_5674_new	8	10	17	11	13	11	16	12	10	4
CCGGAACCATTACATA	ref_5674_new	47	58	73	69	48	53	54	34	40	43
GTACATTTCGCTAAAA	ref_5674_new	28	47	43	32	24	29	33	30	36	36
TTCGTGTATTAGCGGT	ref_5674_new	42	70	35	33	57	28	55	34	63	28
ACTCGCATCTGAAACA	ref_5674_new	16	22	23	30	30	23	22	20	25	11
TATTGTTGGCACTTAG	ref_5674_new	10	9	13	6	10	4	8	8	10	5
GAGCGTCTTCAGGTGT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
AAATGTAAGGAACGTC	ref_5674_new	34	44	56	37	46	28	54	31	44	34
CACGAAGCATCTCGTG	ref_5674_new	19	15	43	21	26	26	24	32	29	18
GTGAGGATCGTACACG	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TCCGATTCGCTCTTTC	ref_5674_new	4	3	5	1	4	3	5	8	2	5
AGGGACTGCCGGCTCA	ref_5674_new	78	64	69	69	84	50	82	65	81	60
GCGTAATACGTTATGA	ref_5674_new	25	30	15	16	28	19	23	14	22	17
GGGAGCCGGTAAACGT	ref_5674_new	3	4	4	6	6	8	7	6	10	13
ACGAAGGTTACGGGCA	ref_5674_new	19	29	35	18	32	24	24	14	23	16
TGGATTGGTAATAGCG	ref_5674_new	37	49	55	35	67	46	43	36	41	40
GTGGTCACCTGATGCG	ref_5674_new	118	149	104	95	135	69	136	110	151	94
AAGGTTGTGGCTCGGG	ref_5674_new	45	24	45	47	48	37	30	30	28	44
TACCCCACGGTCACCT	ref_5674_new	8	7	8	13	8	6	9	8	8	7
CGTTCAGTAAGGTATC	ref_5674_new	11	22	16	11	21	12	18	7	12	8
ACGTCTCATGGTCTGC	ref_5674_new	17	10	29	15	30	19	34	13	29	15
GTTTAATCGTGCATTT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
AGCGTGTCGTTGGCTT	ref_5674_new	41	43	44	53	63	36	42	37	63	29
ATATTTTGACACAGTA	ref_5674_new	12	45	29	27	34	24	40	43	48	30
GTTACGCTCGGTTTGT	ref_5674_new	53	52	65	50	53	60	60	48	69	29
TCAAGTGGTCTTGTTA	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TCGTATCAACGATAGT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
ACCTTCGTGCTGGTGT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
ATTATGTCCCACTTAC	ref_5674_new	42	44	55	49	56	39	53	43	57	42
CGTATCGCAGGATGAA	ref_5674_new	5	5	7	7	12	8	8	4	13	8
CTGTTTTATACCAATG	ref_5674_new	21	17	17	12	19	10	17	14	26	16
TACCCACGGGTCATTA	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TCTGCTTCGGCCTAAT	ref_5674_new	10	10	11	7	5	12	9	3	16	2
GAGTACCAGCGTGTTC	ref_5674_new	105	120	146	108	124	125	130	88	130	81
ACTTACTTCTTTTACC	ref_5674_new	47	59	51	48	52	40	53	53	60	58
TGATTCGCTTCTTTGG	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TCTGGTTCGTCTGTTA	ref_5674_new	6	4	1	3	6	3	5	5	4	5
TCTTGCACTATCGGGT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
CTTCTTGATTGGTTTA	ref_5674_new	0	0	0	0	0	0	0	0	0	0
TCACTAGCGTTTGAAC	ref_5674_new	38	64	83	67	66	40	78	58	74	60
GGCCTTACCGGACGTG	ref_5674_new	27	27	37	19	17	20	21	15	14	21
GTAGCCCAACTGTAAC	ref_5674_new	0	0	0	0	0	0	0	0	0	0
GGCTCATATTCATAAA	ref_5674_new	39	52	60	56	63	50	49	52	60	39
TCTCGCACAAATCCTG	ref_5674_new	38	51	33	38	44	47	36	38	47	37
ACACAACCTATTATGT	ref_5674_new	0	0	0	0	0	0	0	0	0	0
AAGACTACAGCATATT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GGAGCACCAAGGCCTC	ref_3943_upstream	42	55	30	43	38	25	50	30	43	42
TAGGTTCGTTTAATAA	ref_3943_upstream	29	55	53	41	62	48	50	37	57	40
TTAACAAGCAGAGTCA	ref_3943_upstream	7	5	2	7	6	8	16	9	4	12
GACTCTTTCTAACATC	ref_3943_upstream	21	45	42	26	37	32	45	23	31	25
CCACCCCGTTTGGGTG	ref_3943_upstream	13	41	16	14	45	16	51	14	42	13
TAGGGATGCTGTTGGA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
AGATGCGAGGCATTCT	ref_3943_upstream	17	24	37	19	49	23	31	25	30	23
CCGACGCTGTAACTTT	ref_3943_upstream	31	73	50	49	77	29	54	43	73	45
TCTATAAGGCTCCCAG	ref_3943_upstream	170	242	172	170	234	158	259	144	239	148
AAATATCATTCGGGCA	ref_3943_upstream	28	34	37	22	42	19	34	25	34	22
GCATAGGGTTATTTAG	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
AAAACACTCTGCCGGG	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCGTTCCTGCGGC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTTGGACATAGGT	ref_3943_upstream	13	25	20	14	40	12	25	18	35	10
CCAAACGTTTTTGGCG	ref_3943_upstream	54	86	78	45	80	37	87	44	85	40
GTAGAGGGGTATCTCT	ref_3943_upstream	52	88	88	64	67	55	108	70	106	42
ATTTGTGGTCTCAATA	ref_3943_upstream	87	114	113	118	116	93	120	68	133	61
TAGCTTCGAGATGTAC	ref_3943_upstream	13	22	26	26	27	22	41	18	33	22
CTATTATCTTGCGCCC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAACTCGTCTATT	ref_3943_upstream	7	10	10	14	12	10	16	5	9	9
GGGTCTACCCCTCTTG	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GTACTTTTTTCGGGCA	ref_3943_upstream	144	238	208	161	260	152	262	146	289	130
TTTTTGACTTAAGAGC	ref_3943_upstream	110	142	124	110	167	99	168	81	187	123
TTGTATGTTATCCGCT	ref_3943_upstream	21	37	29	30	40	30	44	26	42	24
ATACTACGAAGTCTAC	ref_3943_upstream	20	55	15	16	36	16	53	13	34	35
CCGCGCGTATCCACCT	ref_3943_upstream	9	20	12	16	16	9	24	13	19	11
TGGATCTTAAGTCTTA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAACACGGCTCAT	ref_3943_upstream	1	7	5	3	5	3	9	3	7	0
TGCCCAAGCGCTCTAC	ref_3943_upstream	43	67	48	38	76	29	54	45	58	29
CTAGACCCGTCGTCGC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGGGCCGTGCCCA	ref_3943_upstream	47	59	40	45	67	54	78	50	71	54
CAGCCGTCTCCGAAGC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CATCAGGGGACAGCCA	ref_3943_upstream	8	3	7	1	8	8	3	3	4	4
GTTGCGGTTATTGCCT	ref_3943_upstream	35	44	53	46	62	41	49	29	58	33
AAATTTCGTTCATCGT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTGTATCATTATT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
ATACTGGTTATCTTTT	ref_3943_upstream	19	21	17	12	32	16	31	19	31	12
ACGGTCCTTATTTTGC	ref_3943_upstream	52	52	44	37	88	51	81	45	78	52
GATTTAACCGTTCGCC	ref_3943_upstream	103	179	147	144	198	99	159	111	208	100
TATTTCATATACGGCT	ref_3943_upstream	13	24	15	12	17	10	25	13	16	16
ATATGTCATTACCTCG	ref_3943_upstream	3	1	9	3	3	2	5	3	2	4
ATGTTACGACATACTC	ref_3943_upstream	49	54	37	43	51	32	51	33	63	29
GTGATTAATGTACTCA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CGGACTTTGTCCCGAT	ref_3943_upstream	4	6	4	7	4	5	5	3	3	0
CACTTACTAAAGCGAG	ref_3943_upstream	11	13	4	19	5	15	18	12	15	10
ACTCCTTCGTTTCCAA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CCTTAAAGATGAGGGT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GAAGGGCCTATCCCCA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GCATCATAATATAACA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGTAATATCCACT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GATTGCTAGAGACAAT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CTACACGTACCCTGAT	ref_3943_upstream	26	39	37	22	43	16	37	14	40	22
CCTACTCTCGTAGAGC	ref_3943_upstream	25	55	29	24	53	19	59	22	52	17
TTTGGACATGTTATGA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTCATCTAACAAC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
ACCCCTTTTCGATCTA	ref_3943_upstream	3	2	0	0	7	0	3	5	5	2
GAGATGGTCCGTGGGT	ref_3943_upstream	22	40	35	34	63	29	41	27	32	25
TGAGAAATGCTCAGCT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCAATCCCATCAC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GTGGAGCTTGCAGCGA	ref_3943_upstream	3	6	12	3	8	3	14	6	12	4
TTTTGTAATATCCACT	ref_3943_upstream	154	185	162	154	180	129	194	153	196	158
GGGTTAAGCTTTGTTC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
TTATTGCTGTGTTCAG	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CCCCCATTATTATCTT	ref_3943_upstream	75	104	82	69	91	78	102	82	101	67
ATAACCTACAGGTATA	ref_3943_upstream	14	22	25	11	19	7	18	7	20	10
TTTACAATCCATTCGT	ref_3943_upstream	10	15	22	7	17	17	14	8	24	4
CCATCAGACGCGGTGA	ref_3943_upstream	77	99	99	75	131	76	116	64	126	75
ATTGCGAATGGGTCTG	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CCTGACTGCGTCCTGA	ref_3943_upstream	10	23	16	6	25	10	24	9	39	9
ACTTTTTCCTAGTGTC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GACCGTATGATACAAA	ref_3943_upstream	9	17	12	15	16	13	15	11	21	9
TGGTGTTCTACCACTA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GTATAAGCGTGCCGTA	ref_3943_upstream	6	12	6	9	6	7	15	11	21	11
TCATAATCTGCCGCAA	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
TATGCCTCGACCTAGC	ref_3943_upstream	62	128	80	53	130	47	102	52	118	57
TACTATCGGGACACAC	ref_3943_upstream	101	158	149	119	186	113	188	103	215	110
CGGCCACTGAGACGTG	ref_3943_upstream	47	78	48	42	82	30	61	41	76	36
CACCCACTTTCACTAC	ref_3943_upstream	73	131	106	90	138	79	138	92	129	74
GCCCGGTGCGATGAAT	ref_3943_upstream	16	40	49	25	45	39	45	30	39	21
CTCCATTTGTTCTGAG	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTGGGCCCTGAGC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
CCCTACCCCTAGTGAT	ref_3943_upstream	47	117	55	55	102	57	118	64	130	45
TGCCCTGCTGCGTAGC	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGGTCCAGATGGT	ref_3943_upstream	0	0	0	0	0	0	0	0	0	0
GTATCTTGGCTCCGTC	ref_3943_upstream	79	130	86	71	121	77	124	64	122	67
GGGCTTTACCTACCTC	ref_4632_upstream	0	5	0	0	4	0	3	0	3	0
GGCACCATTATTATGT	ref_4632_upstream	8	18	15	5	8	14	14	3	11	5
TTTGCAGGTTGTGTAG	ref_4632_upstream	98	167	106	93	150	76	189	85	211	85
ACTATTAGCGTTGGGA	ref_4632_upstream	15	39	20	15	34	17	24	11	27	18
CCTCCAAAGCTTCTAT	ref_4632_upstream	1	16	3	10	10	6	9	5	16	3
TTTGCATTTCTAGCAC	ref_4632_upstream	19	35	29	20	35	25	50	26	52	24
TTGCACGTAGGTGTAT	ref_4632_upstream	5	4	12	5	5	4	5	7	16	5
GTTTACCCTAGGCTTG	ref_4632_upstream	26	22	36	20	31	27	30	27	30	19
GGCCCGGTCAATTTCT	ref_4632_upstream	5	9	7	3	3	3	6	3	5	2
GAGGCAGATCGGGAGA	ref_4632_upstream	161	177	163	143	159	127	208	155	210	128
ATGCCTCTTTATATGC	ref_4632_upstream	0	0	1	0	3	1	5	0	2	2
AACCGGCGAGGCGTAC	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
CTGAATGTACGTAAAT	ref_4632_upstream	100	168	152	112	154	87	165	96	174	113
CCTAAGGTGTCGTTCA	ref_4632_upstream	3	7	5	7	8	3	7	3	16	6
GTACTTTACTATAATG	ref_4632_upstream	15	17	23	16	31	14	21	13	25	12
GCAATGTCCTGTGTGC	ref_4632_upstream	96	153	140	92	136	95	156	100	151	78
TCTCTTTTCGCCCGCC	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GTATAGTTGCACGTGC	ref_4632_upstream	23	35	21	20	23	16	31	16	26	20
GGTGACGTGAACGCGC	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCCGTCTGCTTCC	ref_4632_upstream	8	39	12	15	35	9	43	8	30	11
GTGGAGGTAAGGGTTT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGCGCTGCAATGA	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
TTGCAGAGCGCTCGAG	ref_4632_upstream	4	7	14	16	16	10	19	10	26	5
ACACTCAGCCTTCATA	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGTGTTATTATGG	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GGGATGTATGTGCTTC	ref_4632_upstream	2	10	7	2	9	2	4	6	7	4
TAATTGTACCCCGGTG	ref_4632_upstream	13	33	17	16	37	30	24	23	52	14
TGATAACAATTAAAGC	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
TCACTTAGGAATCACT	ref_4632_upstream	14	26	21	30	29	23	36	26	36	13
TGGCCGTTTGATTTTC	ref_4632_upstream	24	28	27	21	26	20	22	20	25	17
TGGAAATGAGCACCTC	ref_4632_upstream	35	38	38	43	28	39	34	48	39	35
ATATCCCATCGCTCTG	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
AAAGCTTGTTTGACTT	ref_4632_upstream	28	33	43	27	55	25	49	19	51	42
CCGTACGAGTGGGGCT	ref_4632_upstream	3	6	3	2	2	2	6	2	1	1
CGTTTAATGATCGCTT	ref_4632_upstream	1	1	0	1	0	2	1	0	0	4
CCTTTGTTTCTGTTGG	ref_4632_upstream	42	77	60	65	92	43	99	41	94	36
ATTGTTCAGGCTCGTC	ref_4632_upstream	1	1	0	0	1	0	4	0	1	0
TATCATAGGAAGGAAT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GTACCTTATATTCGTT	ref_4632_upstream	18	28	32	14	32	16	32	18	36	22
TTTTGAAGACGCGGAC	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GAGTAGACCACAGAAC	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGCATACTTTTTC	ref_4632_upstream	22	26	11	10	15	14	29	14	29	8
CTATAAGCGCGCGCTT	ref_4632_upstream	19	29	19	17	29	19	18	11	28	10
GGTTCGTGTGTTTCGC	ref_4632_upstream	26	47	36	27	34	20	49	17	40	20
AGTCGGGGTGCGGGCG	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCTACACAGTACT	ref_4632_upstream	0	1	0	0	0	0	0	0	1	0
TTCGTGTCCGTAAATT	ref_4632_upstream	156	229	210	166	269	173	274	159	288	137
CGTTTCCTGGTTTTCC	ref_4632_upstream	21	17	12	13	30	12	30	14	19	12
GATTAGGTCGGGGGGT	ref_4632_upstream	6	3	7	10	8	2	15	6	7	2
GAAGGGGTAGTTGAAA	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GGCATTACGTAATTAT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
TTTCACTTTTGGCTGT	ref_4632_upstream	10	19	19	19	27	14	36	17	24	19
ATCAAGGTTTTATAGT	ref_4632_upstream	8	17	17	12	20	8	15	9	26	7
GTTCGTCGTATTCGGG	ref_4632_upstream	33	43	31	27	47	30	53	26	55	28
GTACTGCTCTAGAGGT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
TACCCACCTCGACGGC	ref_4632_upstream	39	77	55	58	101	55	99	41	100	58
GCAGTATCTCCCGTGA	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GACATGTCCATCATCT	ref_4632_upstream	9	12	15	14	20	10	21	15	28	7
CACTGATCGTGGTCTT	ref_4632_upstream	8	13	6	5	5	7	13	8	9	14
CGCTTAATCCAGCGCT	alt_4632_upstream	39	72	62	63	67	35	89	47	64	37
GGGCTGGCATGTTGCA	ref_4632_upstream	7	14	10	10	9	6	12	10	20	4
TAGTTTCAGTTGCCGT	ref_4632_upstream	2	3	10	8	8	5	8	2	6	6
TGAATTAAGGTATAAT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GCGACAGCTTAGCATA	ref_4632_upstream	0	1	2	0	0	3	0	0	0	0
TATTGTCCTTTGCCCG	ref_4632_upstream	116	166	147	111	190	116	199	116	189	81
ATATACCTGTAGCGTG	ref_4632_upstream	4	6	4	7	8	5	5	6	9	6
GGTGCCAAAGTTGTCT	ref_4632_upstream	26	22	28	21	33	17	37	10	44	25
TCGATATTCATGCCCT	ref_4632_upstream	28	33	28	18	27	16	37	23	44	18
CCTTTGTTAAATCGCC	ref_4632_upstream	10	15	11	16	12	8	18	6	23	9
AGCGCTGTCTGGTATG	ref_4632_upstream	31	60	28	23	66	23	54	18	54	23
GGCCATGTACAAAACG	ref_4632_upstream	12	22	16	15	27	10	23	11	23	13
TACGTTTTCGTGCTTT	ref_4632_upstream	25	58	40	37	47	27	72	28	69	30
ACGGGGCCCCATTGGT	ref_4632_upstream	4	3	12	4	6	2	10	0	8	5
TTTTAACTCGCCGCGA	ref_4632_upstream	0	1	0	1	3	0	4	1	5	0
CTCCTGGGACTTAGGT	ref_4632_upstream	64	93	69	57	86	46	92	48	125	52
TGGACCTCCTGAGGGA	ref_4632_upstream	49	106	69	45	99	48	84	50	131	49
TTGATCGCACTTCGAC	ref_4632_upstream	12	26	16	9	26	11	25	18	29	8
ACTAAGTGCAGAACCT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
CTTATCGTCCTTACGG	ref_4632_upstream	15	18	19	9	34	21	29	19	33	19
CCGTCATGGTCCTTGA	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGCTGTACAGTTT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGTCTGACTGCTT	ref_4632_upstream	5	37	4	6	48	3	48	3	46	4
TTGTGCCCCGTATATC	ref_4632_upstream	4	5	4	4	3	6	7	0	3	3
GGGCACCCACCATTAC	ref_4632_upstream	28	41	43	41	34	29	52	20	47	38
TATCATTGTCGGGGAG	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
ATTAGATGGTCGCTCC	ref_4632_upstream	38	70	34	31	51	30	51	31	52	31
CCAGGTTCATATTGTC	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCAATCACACTAA	ref_4632_upstream	12	17	17	11	25	11	21	7	14	16
TCCAGTTGGATATTAT	ref_4632_upstream	58	70	67	40	64	41	86	28	66	43
CGGCCTATCGCCGATC	ref_4632_upstream	12	16	10	8	6	5	10	12	12	9
CCTCGGGTAATGTTAG	ref_4632_upstream	11	23	18	16	22	8	19	6	31	14
TCGTACGGAGAATTGG	alt_4632_upstream	15	25	14	11	18	8	31	13	24	8
TTACTGTCTAATTTCG	ref_4632_upstream	0	2	0	2	0	2	1	1	1	1
GGTGACTGGTTTCAGT	ref_4632_upstream	31	53	30	19	29	16	31	27	38	18
CGGTCAATGCTTCACG	ref_4632_upstream	8	10	4	4	6	3	5	4	9	3
TAAGGCTCGAGCTCAA	ref_4632_upstream	2	1	2	1	1	1	0	1	1	2
CTCGTTATTTCTTCCA	ref_4632_upstream	10	13	10	15	17	18	17	13	18	5
TTGCTCAGACCACCTC	ref_4632_upstream	8	10	20	16	26	11	21	23	20	19
GTCCGTTTACTGCGAT	ref_4632_upstream	11	16	27	23	30	19	25	7	23	13
TGGCCTCAAGGGTGTT	ref_4632_upstream	0	0	0	0	0	0	0	0	0	0
CATTATTTGGCCCCGT	ref_4632_upstream	20	26	18	14	27	23	23	12	21	16
TTCTGCTATTCCTTGG	ref_4632_upstream	19	24	20	19	26	15	38	9	27	10
GTAGTCTAAAACAACG	ref_4632_upstream	10	18	14	10	21	9	22	12	18	16
CATTCGATGCCCTATA	ref_4632_upstream	17	17	27	16	39	12	34	14	35	19
ATAAATAATGTGCTGG	ref_4632_upstream	27	51	50	37	33	31	59	34	31	36
TTCCCAACTCATGCAT	ref_5747_new	0	0	0	0	0	0	0	0	0	0
GTTTGCACAACTCCTT	ref_5747_new	10	25	7	8	23	13	21	7	22	8
TGTAAAGAGCCACAAC	ref_5747_new	25	33	23	30	32	12	22	20	40	21
CAATTTAGTGCATTAT	ref_5747_new	56	81	69	57	74	49	65	58	91	45
GCCACGAGCGTATTAT	ref_5747_new	0	0	0	0	0	0	0	0	0	0
ATTTCTTTCTCCGCGT	ref_5747_new	14	30	14	21	26	17	32	24	36	17
GTACGGTCATTAAACA	ref_5747_new	0	0	0	0	0	0	0	0	0	0
TGGTTGTAGGACGTCC	ref_5747_new	0	0	0	0	0	0	0	0	0	0
TCCGGCAAGTGCACGG	ref_5747_new	0	0	0	0	0	0	0	0	0	0
TAGGCAATTCAGGTTT	ref_5747_new	34	66	53	39	66	29	45	30	82	33
ATTCTTAAAGTAATCT	ref_5747_new	8	6	3	11	11	5	11	7	8	4
TCGCGCCCGTCGCCCC	ref_5747_new	6	15	9	5	19	8	16	8	13	10
AGACTCTATCCATTGC	ref_5747_new	5	16	17	9	27	12	25	8	17	7
TTGAATGTCACTGCGG	ref_5747_new	55	102	75	57	104	47	86	48	91	51
CCGGCACGTATCAACG	ref_5747_new	0	0	0	0	0	0	0	0	0	0
GACCATAACAATGGGT	ref_5747_new	21	16	14	12	35	17	32	19	29	16
TGAGCATAAGTGGCCC	ref_5747_new	30	36	30	20	38	20	41	19	55	17
GAGTGAGTTTCTAGTG	ref_5747_new	28	39	27	25	47	29	61	25	72	24
CAATTTTTTGCCACCC	ref_5747_new	2	8	5	0	22	3	8	3	17	1
TCCACAAGCTCGATTA	ref_5747_new	12	17	14	5	13	7	21	6	21	6
TTTCCCCTGCTGTATC	ref_5747_new	0	0	0	0	0	0	0	0	0	0
GTGTGTTCTTTGACTT	ref_5747_new	0	0	0	0	0	0	0	0	0	0
AGGTAAAGATGCCTTC	ref_5747_new	63	99	77	45	82	53	77	55	96	55
GTAAATGAAAATTGGA	ref_5747_new	0	0	0	0	0	0	0	0	0	0
CTAAATTCTCTGTTCC	ref_5747_new	12	16	14	15	14	14	24	8	15	8
GCCGCTACCGTAGCAC	ref_5747_new	17	30	21	8	35	22	35	18	25	9
TATCCCGCCAGCGCCC	ref_5747_new	15	49	27	28	43	15	38	25	30	17
TATACTCTGTGCGGCC	ref_5747_new	32	57	35	27	66	30	54	35	72	40
GAAGTGCACGTTACCC	ref_5747_new	58	93	77	48	116	51	110	57	128	39
TACCTCCAACTATCCA	ref_5747_new	17	42	21	23	66	22	42	30	46	14
ATAGTGCATCCCATTT	ref_5747_new	11	28	21	10	20	6	22	8	35	16
TCGTCGAGGGGCAGCA	ref_5747_new	0	1	2	2	2	3	3	1	1	0
TTTCCGTTGTTCCGGG	ref_5747_new	0	0	0	0	0	0	0	0	0	0
TATCGCTGGTCGACCG	ref_5747_new	83	182	97	77	187	106	175	90	238	64
GAGCACATTGTAAACA	ref_5747_new	0	0	0	0	0	0	0	0	0	0
AGCTGTGACTTATTGG	ref_5747_new	0	0	0	0	0	0	0	0	0	0
GTTCCCGAGGATCATT	ref_5747_new	14	25	16	16	23	12	23	14	26	8
AATATCGAGTTCGTAC	ref_5747_new	34	54	31	32	61	31	75	28	79	28
TCGAAATAATGCCAGT	ref_5747_new	0	0	0	0	0	0	0	0	0	0
TCTCTATGAGATTCCC	ref_5747_new	14	14	11	6	20	14	17	9	16	5
GCGTTAGATAGCCTCC	ref_5747_new	34	53	56	35	65	32	63	41	71	35
CTTTTGTGCAACGACG	ref_5747_new	10	24	6	14	14	15	19	4	21	4
TTTGCGAAGGATCTCG	ref_5747_new	8	8	6	4	8	9	16	10	18	3
TTTCCCTATGGTTCAA	ref_5747_new	16	16	13	11	22	10	17	12	23	8
CAGTTATTAGTTTCTT	ref_5747_new	46	93	55	53	101	68	116	40	102	49
TCCCTACGATTACGCG	ref_5747_new	8	11	3	9	13	2	12	8	11	2
GAATCTTAGGTTAGTG	ref_5747_new	19	30	30	16	34	19	46	19	48	13
TTTGCCGGGTGATCGG	ref_5747_new	0	0	0	0	0	0	0	0	0	0
CGGGACTCTGGTTTCT	ref_5747_new	22	20	20	20	34	28	36	12	42	12
TCTCATATATTCTCGT	ref_5747_new	24	40	19	13	28	19	26	20	31	16
GTATATCTTCGGTCCG	ref_5747_new	58	100	73	58	87	46	83	53	100	45
TCCCTCGGACAAACTC	ref_5747_new	0	0	0	0	0	0	0	0	0	0
AATACGACAGTAATCT	ref_5747_new	13	32	22	13	31	11	23	14	21	15
GGTGGTTCCTTCAGGC	ref_5747_new	26	44	41	36	60	33	51	36	58	25
GATTGTTCCTGGTAAT	ref_5747_new	18	28	18	11	29	10	27	10	23	18
GCCTTACGCTCAAATT	ref_5747_new	14	27	17	21	19	14	22	11	31	15
TTTGCCTCGGGGCTGT	ref_5747_new	3	16	7	6	15	6	12	3	8	4
CAAGCCCATGCCCCAC	ref_5747_new	9	43	6	10	47	6	39	2	56	4
CCACTAGCAATTGCTG	ref_5747_new	128	197	119	137	181	109	212	113	223	88
TTCAAGTAACATTCAT	ref_5747_new	37	80	45	31	61	24	55	28	64	33
TAGTTGTTATGAAATG	ref_5747_new	6	8	2	2	5	3	7	1	9	0
CGAAGGAATCTCGGTT	ref_5747_new	15	30	26	27	22	16	33	13	21	17
CATGCAGAAGTAATTT	ref_5747_new	0	0	0	0	0	0	0	0	0	0
TTTCATCTAGTGTCAT	ref_5747_new	0	0	0	0	0	0	0	0	0	0
TTTGTAGCTCCCTGAG	ref_5747_new	0	0	0	0	0	0	0	0	0	0
CAGGAGCGCTCGTGAG	ref_5747_new	17	25	13	26	38	11	36	16	46	12
GAAGCGAGGGGCGCTC	ref_5747_new	28	35	24	16	39	26	36	16	45	20
TTGGTCCGTGTTCTGC	ref_939_reverse	20	24	22	14	9	8	20	18	13	7
GGCTGCCAGAGTCTCA	ref_939_reverse	9	21	15	9	18	9	14	8	18	10
CTTTCTTTCTGTTTCT	ref_939_reverse	6	16	12	9	14	15	15	9	19	2
CAATGTAAGCCCGGGC	ref_939_reverse	12	25	9	15	18	8	25	14	24	15
GTTTTTCACCTAAACT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CTACCTGATTGGAATC	ref_939_reverse	6	10	8	8	25	5	19	4	15	7
ATCCCTCAGCTTTCTT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TACACTATCCTAATGC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTGTCTGGCATGT	ref_939_reverse	8	15	21	13	22	15	12	10	14	12
GGATTGAATGGTCGTT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TAGTATCAGACACTCG	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
ACCATTTATAAATGGA	ref_939_reverse	15	28	15	15	14	22	14	10	22	10
ATAACACTATGACCCG	ref_939_reverse	6	0	1	1	2	1	1	2	1	1
GTGACGTTAAACTTCT	ref_939_reverse	18	14	22	19	21	16	26	6	25	14
ACTGTCAAAGCTAATA	ref_939_reverse	61	79	76	77	111	64	83	65	113	54
TCATCGCCTTTGCCGC	ref_939_reverse	16	13	10	20	22	14	18	10	32	5
ACAACGATGCTAGGTT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CACTACAACTGGACCT	ref_939_reverse	0	1	1	6	4	1	3	3	1	1
GGCTTCCGTCTGCTAT	ref_939_reverse	32	27	31	25	52	22	41	32	41	23
CTTGAACCTCATAGCT	ref_939_reverse	3	14	8	7	13	5	7	6	6	4
GTGTTCATTCGTAGGC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTGCTGGTCTGGA	ref_939_reverse	22	45	27	18	38	19	35	20	38	20
ATTATCGGATATGCAA	ref_939_reverse	23	22	39	26	29	28	39	29	36	25
CTTCTGAGGTTATGTG	alt_939_reverse	80	145	110	101	141	78	147	85	143	59
CTTGACCCTGCGATAC	ref_939_reverse	5	4	6	5	3	6	3	5	8	3
GTGCTGATTAGTTGTG	ref_939_reverse	23	22	18	21	25	15	23	16	28	11
CCACCGTTTTAATTTT	ref_939_reverse	4	7	4	9	14	1	9	4	8	3
TGTATAGTGTTTGTTA	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TACGCTGACATGACCG	ref_939_reverse	81	121	96	85	156	74	122	90	131	70
TTCTTCGCATATCTAC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTGCGCTTAGGGT	ref_939_reverse	37	50	38	36	44	27	59	35	70	26
TTCATGTTACGGTGTG	ref_939_reverse	2	11	8	12	8	7	12	2	20	4
GCTCTAAACCTGCTGT	ref_939_reverse	19	21	20	24	17	17	32	13	31	14
TTAGAACCCCGGAACG	ref_939_reverse	12	30	10	17	26	11	28	15	34	15
CCCGTCCGTATACGTG	ref_939_reverse	10	32	10	12	32	11	24	10	35	9
AGTAGATGGCCGCAGA	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TCTACCCTCTTCCTGC	ref_939_reverse	16	20	23	15	24	15	26	12	24	8
TCATGAATGCCCTACC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TCAAAGTTACTATGGT	ref_939_reverse	61	100	75	61	101	95	115	55	89	48
ATTTTTCTTCAGTAAG	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGAATATGCCCTT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTTGGTCTATTGC	ref_939_reverse	25	96	41	51	97	30	80	36	101	28
TACTCCATAAGCCGTA	ref_939_reverse	47	110	65	42	91	42	121	37	109	49
ATGTCAGCTCCGGTCG	ref_939_reverse	16	26	24	29	23	13	32	20	45	23
CCCTCGCGTTTTTGCT	ref_939_reverse	2	17	10	4	11	7	11	8	12	8
TTGGACTTTTTCGGCC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
GGCACAGCAAGCGCTG	ref_939_reverse	16	34	16	25	31	17	34	21	33	15
TTCCAATTCTTCTCTT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CTCACTGATCGCTTTC	ref_939_reverse	3	5	3	3	7	4	3	1	3	3
CTACGTAGTGTTTACG	ref_939_reverse	12	26	21	13	23	8	34	12	31	9
AGCATAATTGCACCCA	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTAGCGTGACGGT	ref_939_reverse	15	29	26	16	24	19	36	13	30	23
CAGGCGCTCATCCTGT	ref_939_reverse	9	29	12	20	22	9	30	18	31	9
ACAAAACGTTGTTTAT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTGGATTTGTTAA	ref_939_reverse	1	0	5	2	3	1	2	3	0	2
TTCCACCAGGCGTAAT	ref_939_reverse	34	36	41	31	49	22	42	28	56	16
TGTTTATGACTGTGCT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
GCACCTTAAACAACAT	ref_939_reverse	12	31	19	7	32	10	26	23	40	16
CCACTTTTTCTAGAGC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
GTAGAGGGTCTGAACC	ref_939_reverse	2	3	5	1	10	8	3	3	9	6
AAGCCGTTCTTTCTCG	ref_939_reverse	7	18	8	4	8	2	13	5	10	9
GTCCGCCTTACCGTGC	ref_939_reverse	2	15	2	4	5	7	7	1	6	4
GCACCCTCAGGTTCCC	ref_939_reverse	10	14	6	5	25	7	21	9	24	7
GGTGTATATCGGGGAG	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTCAAATAGGACG	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
GGGAGTACCGGAATTC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGAATATTGTGCG	ref_939_reverse	8	37	6	10	40	9	30	9	45	9
CTGGATATGGACGGGT	ref_939_reverse	26	57	41	25	60	28	39	36	69	34
AGTGTTGATGTTTCTC	ref_939_reverse	78	103	70	65	84	54	81	53	81	55
TTGGCTTTTCTTGCCT	ref_939_reverse	0	0	5	2	1	0	0	1	3	0
TACTTCAAATAACAAG	ref_939_reverse	12	25	13	13	25	14	19	7	28	14
AAATTGTCTTATCGCC	ref_939_reverse	2	5	2	0	3	2	4	1	3	5
GCCAATCAGGATGATG	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGCCGCGGATAGA	ref_939_reverse	16	67	14	20	62	23	67	17	78	12
GCCGGAGCGGGATAGG	ref_939_reverse	19	31	19	14	21	14	28	27	33	16
GCCGGTGGGGCGATAC	ref_939_reverse	5	10	3	11	8	3	9	6	8	8
GATAGTATGGCCCCAG	ref_939_reverse	26	42	47	35	58	35	46	37	56	32
TCGCTTATTATCTACC	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGCCGAACGTTAT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
ATATCGCGTTGTGTTG	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CTCACGGGTCTATCTT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
TCACATGCAAGTTAGA	ref_939_reverse	24	31	29	14	35	23	37	15	27	9
CGTCTACCCTGAGTAT	ref_939_reverse	38	77	63	72	86	49	99	59	97	51
CAAGTTGTTGACCCTG	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CCATTGTACACGGCTA	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
ATTAAACCAGCATGGT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCTCTCCTGGTGA	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGTGGGTTTCTGG	ref_939_reverse	2	6	6	6	13	2	8	4	7	6
CATATTAAGCAGGAAG	ref_939_reverse	11	22	20	8	19	18	23	13	24	16
ATCGCATCTAGAGGTT	ref_939_reverse	0	0	0	0	0	0	0	0	0	0
GATATGTTGGCATGAG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CTTCATTGGACGGCAG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GTCGTTGGTTTCCACA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TGCTGATGCGTGCATG	alt_5999_new	59	52	63	62	65	47	59	38	68	43
TTAGTTAATTTGTATG	alt_5999_new	36	38	31	25	46	33	32	17	36	17
CGTTGAAAAGGGCAAT	alt_5999_new	8	9	10	16	16	10	12	9	13	8
GCTTCGGTCAATTTGA	alt_5999_new	14	26	24	30	31	27	19	14	23	21
TTGTCAACTTAATCAA	alt_5999_new	258	278	325	298	319	258	326	253	323	273
GTCTGTTGACGGTCAC	alt_5999_new	606	651	710	603	688	583	723	546	783	519
TGGAAGTGTATTGCGT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TGCAGCTGATTTCATT	alt_5999_new	19	22	36	24	21	18	24	10	23	27
TATACACTCACTTCAT	alt_5999_new	0	4	2	0	2	1	0	0	2	1
GTACAAGAGTATATAC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
ATCCGTGATTCGCTAG	alt_5999_new	49	68	62	47	74	51	59	61	74	38
TTAGGAGCTGCACATT	alt_5999_new	47	62	71	60	58	57	56	58	72	45
GATTTGGCCGGCAGAT	alt_5999_new	14	24	19	17	31	16	18	19	7	11
AAATGACTGATGGAGG	alt_5999_new	100	103	128	116	115	89	124	119	126	93
GTTTCCCGGTACCGGA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
ATCCTGTGGACGTGTT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GTTAGCTGCTCGTTGG	alt_5999_new	13	20	31	18	18	12	19	8	21	12
CGTCTATAATCTGGTG	alt_5999_new	4	1	4	0	4	1	1	3	1	1
CCGACTCAAGATTGTT	alt_5999_new	4	15	8	6	10	5	17	4	8	2
CGTGTCAGGGAGTTCT	alt_5999_new	26	27	45	31	19	22	21	30	30	27
AGCACGGACTGCGGGC	alt_5999_new	22	48	31	29	57	27	49	22	57	15
TTCATAGCCTAGTTCT	alt_5999_new	27	34	23	20	32	25	45	12	23	19
ATAGGGGGGCTCCTTC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GCGGGCCATGGAACGT	alt_5999_new	92	95	104	96	89	88	118	85	104	73
TTAAAGTGCTTAGCGG	alt_5999_new	12	19	14	18	25	4	28	26	25	16
GAGCGGCTAATGCTTT	alt_5999_new	0	6	8	5	6	7	8	6	11	8
CTCTTGTAATGTAGTC	alt_5999_new	34	43	39	30	40	42	43	32	56	24
AGTTAGGTACCGCCGA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
ATCGTTTAACAGTTCG	alt_5999_new	12	13	12	8	14	13	15	14	15	12
CGACTATGTTTTTTCT	alt_5999_new	29	30	54	40	46	39	49	30	47	37
GTTATCTGCCCCGACA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TCGTCCGCTTTGGACG	alt_5999_new	3	7	7	7	8	2	10	10	4	3
TTTGCCGTACAACGTC	alt_5999_new	11	9	14	14	19	9	13	13	9	12
CAAGTCTCTTAGTCCA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GGGGATAACGCCTTCT	alt_5999_new	9	9	13	10	10	8	18	8	15	8
TCTCTAATCGAAGAGT	alt_5999_new	36	38	36	37	58	23	52	19	43	16
TCCTGTCGCACGATGT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GCTCTTATCTCACTGT	alt_5999_new	10	16	10	17	18	11	17	7	22	6
CTCTTGGAAACTCCGC	alt_5999_new	2	2	3	0	2	3	2	1	2	4
TCGTGAGGGCTCTGCA	alt_5999_new	28	22	31	20	41	17	35	31	31	22
CGTTAGTGTTCTCTAT	alt_5999_new	6	4	4	2	5	8	4	7	8	9
CTTATCACGTACTGGC	alt_5999_new	7	3	6	3	11	2	8	6	10	8
ATTCTTCGTCTGTACT	alt_5999_new	30	22	34	38	32	28	49	24	30	20
ATAACTGGGCTCTCGG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
ACTATATTCAGTCATG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CCCTGTCTTGGCTACT	alt_5999_new	21	19	24	28	23	24	22	21	21	12
TTTCGTAGTCGGGTTG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CTGGTAATAGCGATCT	alt_5999_new	28	27	46	15	26	25	25	32	31	21
TTAGTTCGCGGTTCTT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GCACAGGGGAGCATAT	alt_5999_new	44	44	50	53	49	33	60	40	40	36
TTCCTGCTTCTCCTTG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TTACCGGCGCATACGT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TACTTAGATCTGGTTC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGCCCTTACGC	alt_5999_new	35	29	33	38	42	26	25	31	50	38
TCTAGTTTTCTTGGGT	alt_5999_new	14	10	17	8	12	13	14	6	7	12
GTGATTATACCCCCGT	alt_5999_new	26	29	33	29	33	19	16	24	30	26
CTGCGGTTTGCCCCTG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
ACCATTCGATAAACGC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
ACAAGAAATAAGGTCA	alt_5999_new	5	9	14	8	6	9	9	6	10	12
TGCTGGTGATGCCTTT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CTCTAATCATCTTTGG	alt_5999_new	4	6	11	4	5	2	2	2	5	5
GCCCAGATGAAGATCG	alt_5999_new	8	9	22	10	9	17	14	14	3	12
AGACAGGCTTCGTACA	alt_5999_new	6	12	16	6	9	9	17	11	6	8
CTTTCTTGTCGACACC	alt_5999_new	32	38	32	34	34	31	33	24	42	28
CCGGTAGTACTACTGT	alt_5999_new	12	12	9	9	12	8	14	3	15	11
CCTTCATAGCATCTGC	alt_5999_new	20	24	32	26	34	27	40	27	48	27
AGTGAGATCCGGTTGG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CGCCCCAGCTTAAGTT	alt_5999_new	7	7	6	2	9	6	7	7	7	6
GATGTTTCGGGACTTG	alt_5999_new	8	20	8	7	8	8	7	4	12	4
TCCGGTGCTTTTCGCG	alt_5999_new	1	2	0	2	5	0	7	4	4	2
TGATTAGTATCACCCG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CCTACTCACAGTAAGG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CGGGTTTCTAATGCGT	alt_5999_new	4	4	3	1	4	2	4	2	8	1
CAACATTGTGGTGAAT	alt_5999_new	38	57	49	36	40	34	58	39	79	45
ACATTTGGGTCTTTCC	alt_5999_new	104	124	127	112	116	88	111	88	142	90
TCTTGTTGTAACGTCG	alt_5999_new	9	8	3	6	10	4	11	6	10	2
CATTTTGGGCGAACGC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TCCAACCTTTTGTCGA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TGCCTGCAGACTAACG	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CTGTTCGTTGCTCTCC	alt_5999_new	34	35	41	34	36	44	30	30	36	28
AGCCACCCTTCCGCTT	alt_5999_new	17	26	21	16	9	6	18	11	16	10
ACGAGTTGTTGCCGTA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CCAGGGGGGGCGCGCA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GTTTCATACGAGCCAT	alt_5999_new	33	24	35	27	42	30	50	39	38	38
TGTGAGTTTCTTCCGC	alt_5999_new	96	96	122	97	110	95	115	106	120	105
TGTCTGACTGCATAAA	alt_5999_new	0	0	0	0	0	0	0	0	0	0
ACGAGACTGGATACAA	alt_5999_new	17	15	7	8	20	12	18	16	16	17
ACCTTTCGGTAAGTAC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GTCTGTTGATGGTCAC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CGTGGATTGGAAGGCC	alt_5999_new	20	14	15	13	12	14	10	18	19	16
TGGTATACTTAACGAG	alt_5999_new	6	10	17	11	10	14	14	5	21	16
GTAGTCAGGAAGACAT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CCTGTACCCCTTCTCT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
TTCTATGCAAGGTACT	alt_5999_new	32	32	41	34	37	26	27	17	50	20
TTAATTGTTGCGCTCT	alt_5999_new	102	109	131	123	97	133	119	117	112	101
TCGAGCGGCTACCGGG	alt_5999_new	14	9	14	25	9	10	14	16	15	12
GCAAGCATCTCTATTG	alt_5999_new	12	12	17	8	16	7	23	14	15	12
AGCCCCAGTACGACCT	alt_5999_new	0	0	0	0	0	0	0	0	0	0
CGGTGGGCCCTTTGCG	alt_5999_new	11	18	15	22	19	14	28	13	20	12
GCACCTGTATACTTAA	alt_5999_new	17	35	11	20	30	14	38	21	24	18
CTCTCGGAGCGTTTGC	alt_5999_new	7	3	12	7	4	8	9	7	15	7
CATAGCTGAATCTGCT	alt_5999_new	12	19	25	16	23	15	24	14	27	14
AAAAACTGTCGGCGTC	alt_5999_new	19	24	30	26	27	30	28	23	32	23
CAGTGCGATGCTCAAC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GGTGCAAACTCAGTGC	alt_5999_new	8	3	8	4	8	10	9	2	9	11
CTAACTCATGTCGAGC	alt_5999_new	6	11	11	9	11	15	7	8	11	6
GGGACGCTCAGTGTGC	alt_5999_new	0	0	0	0	0	0	0	0	0	0
GGTGCAATTCTAGCCA	alt_5199_reverse	3	10	9	7	10	3	10	10	7	5
GTGAATTTTACTTACG	alt_5199_reverse	20	49	24	16	50	14	51	25	60	20
AATGCTTCGACGCGTT	alt_5199_reverse	23	37	27	26	52	17	51	18	35	21
AGGCGTTCGTATCGAC	alt_5199_reverse	12	17	21	11	33	11	18	15	19	13
GGCGAGATTGTCCCGC	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
CGCTACTTTATGCACC	alt_5199_reverse	45	57	50	35	58	42	67	45	63	27
TCAAAGTGATTCAATA	alt_5199_reverse	60	84	64	55	70	44	99	45	73	52
TTGACGGGCCGTTTTT	alt_5199_reverse	21	29	25	31	23	30	23	21	28	16
TTTCATCCTGGAAAAC	alt_5199_reverse	51	53	69	51	76	52	74	52	64	45
TAGGGACCCCTGCCTA	alt_5199_reverse	4	3	2	2	1	2	8	4	2	2
CAGCAGATTTTGTCTG	alt_5199_reverse	33	46	29	44	52	39	38	31	45	25
GCTGCACACTTCGATT	alt_5199_reverse	15	6	16	11	20	5	18	8	10	13
TAGTCATCTGTTCGCC	alt_5199_reverse	59	131	83	71	143	66	117	67	132	68
AGTTATCTCGATCTAG	alt_5199_reverse	29	44	42	29	47	40	50	33	34	31
TGGGGAGATTGGCGTC	alt_5199_reverse	22	23	24	19	25	19	26	21	19	11
GGCTATTCAAAAATCA	alt_5199_reverse	36	64	44	39	64	33	69	44	64	47
AACGTGATACACCACT	ref_5199_reverse	44	43	48	57	67	38	58	47	69	46
TTTCTTATTCTTCCGT	alt_5199_reverse	43	38	49	33	45	50	34	35	44	40
CTCACTAGAGGGGATG	alt_5199_reverse	18	22	22	15	31	8	28	18	18	20
CCAATATGCGTTCCAG	alt_5199_reverse	22	31	30	19	54	24	35	30	29	20
GTCGTAAAAGAGCTTA	alt_5199_reverse	101	111	98	84	108	95	121	77	118	79
AGCTATCAATTGCTTA	alt_5199_reverse	86	156	129	134	164	123	177	116	159	109
GCGGTATTCCCGACAG	alt_5199_reverse	20	36	24	19	48	23	31	26	48	23
AAATATTACTAGAGAA	alt_5199_reverse	14	14	16	10	16	8	15	14	8	6
GGCTAGCCACCTTATC	alt_5199_reverse	15	26	21	22	48	18	46	11	38	22
TCGGTGGGCAGGGTTC	alt_5199_reverse	4	10	12	7	8	9	11	9	10	9
TCATCGAGTCACGTTT	alt_5199_reverse	48	85	57	59	108	49	86	54	111	40
GCTGATTCTTGCTCGG	alt_5199_reverse	19	25	36	27	32	22	34	20	27	14
GCTTGGAACGTATTCT	alt_5199_reverse	3	5	5	5	7	7	7	2	7	5
CACTCGTAGCTCTAGC	alt_5199_reverse	68	83	59	52	68	53	53	53	86	43
CGCCCAGAACTCAAGC	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCTCAACGACCTG	alt_5199_reverse	5	23	7	10	24	14	13	12	18	12
CTTGTGTAATTAGGCT	alt_5199_reverse	49	71	49	63	66	55	81	51	72	49
TATTAACACCGTACGC	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTTGACCTTCCCG	alt_5199_reverse	116	165	152	134	182	129	165	115	190	100
ATGGCTTAACGTCGAG	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCGCCGATGTCAT	alt_5199_reverse	3	9	2	2	10	2	6	1	14	0
CAGATATTTAGGCGCC	alt_5199_reverse	27	48	36	38	43	32	59	36	39	27
TGTTTAATTCACCTGT	alt_5199_reverse	22	21	20	14	25	16	28	22	27	12
TCACATAATTTGTGCA	alt_5199_reverse	23	29	24	14	22	20	32	27	32	14
ATAAATCTGGTATTTT	alt_5199_reverse	13	20	26	31	26	10	36	23	20	19
CTTCGTTCTCTTTGCT	alt_5199_reverse	25	13	19	32	18	30	14	33	26	13
CGAAAAAAGTAGCGGT	alt_5199_reverse	18	34	33	31	32	26	21	19	22	22
TTTCGGCTTTTTCTTT	alt_5199_reverse	79	96	97	71	116	82	112	80	123	77
CGGAGTACTTCTATTG	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
CACGCCTTCTTGCTTG	alt_5199_reverse	3	2	2	0	0	0	6	1	5	0
AATTACGCGGTTTGGC	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
CATATTTAAGGCGACA	alt_5199_reverse	28	31	27	20	39	22	33	18	33	23
CAAATCCCTGTTTATT	alt_5199_reverse	26	52	39	18	60	27	36	26	37	28
TGCAGCATATTCATAG	alt_5199_reverse	20	47	16	23	37	28	56	27	48	20
CCACCATGACACCCTG	alt_5199_reverse	5	14	5	5	19	3	17	9	18	6
GACTATACCAGGTTTA	alt_5199_reverse	16	20	9	15	12	13	15	11	19	14
GTTTAGTGAATGTTCT	alt_5199_reverse	21	32	34	19	36	20	35	24	49	31
GGACGGTGGATGGTAA	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
AGATAAAAACAGGCTC	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
AGTGCTGACCCCCCCC	alt_5199_reverse	13	14	29	10	22	17	22	11	21	16
TTGAGTTCTAGTAGTG	alt_5199_reverse	1	7	6	2	10	5	9	2	16	4
CGTCGTATGACTTTGT	alt_5199_reverse	11	27	13	9	18	9	21	10	24	13
TGGGGCCTACCCAGAC	alt_5199_reverse	8	7	10	9	16	5	14	13	19	6
TACGAAATTATACGCA	alt_5199_reverse	34	52	56	43	47	41	52	44	58	37
CTTAGAACACATCCGT	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
CGAACTTCGGCCCTCT	alt_5199_reverse	35	51	47	40	50	47	72	26	58	30
GGACTGAAGCAAAGGG	alt_5199_reverse	82	102	117	121	107	87	104	78	140	74
ATTTCGAAGGTCCCGC	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTGCAAGGTAGGC	alt_5199_reverse	39	64	61	46	60	25	65	27	58	33
GTCCTCACTGCTCGCT	alt_5199_reverse	28	48	36	30	26	21	42	23	49	22
CTGAATTCGTTATCTT	alt_5199_reverse	29	42	33	40	36	32	36	33	40	21
TTTACCATAGTGGGAT	alt_5199_reverse	0	0	0	0	0	0	0	0	0	0
AGCTATATTATAACCG	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
GCTATTCGCTGGCACT	alt_3933_reverse	72	45	66	47	30	47	45	39	41	46
GTCGGAACCCGTCTCG	alt_3933_reverse	38	64	54	53	46	48	42	36	47	37
ACTGTACACTAGGGAC	alt_3933_reverse	15	19	35	20	21	15	15	25	14	13
TGTTATTCTTGTTAGG	alt_3933_reverse	75	62	90	87	69	89	96	65	87	60
TAGGCTCCTTTCAATT	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCTCGAGGGGTCA	alt_3933_reverse	31	46	37	33	45	25	49	36	42	26
CAGCGCACCTTATTTC	alt_3933_reverse	26	39	28	32	25	21	29	35	26	28
CTCCGCGCCCATTCTA	alt_3933_reverse	5	13	18	9	17	14	14	9	9	8
AAGGGTTAGTGTCCGG	alt_3933_reverse	496	427	642	505	392	499	428	461	448	425
TGTCGTCGGTGTCATT	alt_3933_reverse	92	104	100	89	94	102	106	96	106	85
ATAAAGATAATCGTTA	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTATTGAGTATGA	alt_3933_reverse	51	61	71	57	45	57	58	48	63	48
GTACCTGGTTTTCTTC	alt_3933_reverse	51	55	66	65	65	60	64	51	78	53
TTTGTTTATTTACTTT	alt_3933_reverse	20	10	11	25	8	17	12	25	12	12
TCTCTTCAGCGGGTCG	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
GTTACCTCGCGGGGAG	alt_3933_reverse	9	8	24	21	12	11	8	13	9	10
TTCTACCCGTTCCTTC	alt_3933_reverse	60	77	64	62	74	56	73	37	102	54
CATTCACGCCCGCTTA	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
CAACTGATCGCATAGA	alt_3933_reverse	7	6	3	6	9	11	9	8	9	12
CTGGCTCCCATCCCAG	alt_3933_reverse	71	56	95	64	60	65	78	64	63	53
AGATATAGTTACTCGA	alt_3933_reverse	36	23	38	26	27	25	33	19	24	22
GTCCCTAGCAAGTCGC	alt_3933_reverse	209	182	232	185	207	152	200	190	212	173
TCATTTGGGAAACAAA	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
TTATATTAGCTCATAC	alt_3933_reverse	81	97	146	99	109	86	72	87	119	42
TCGTCCGTGCAGACCC	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
GTTATCTCCCGTTTCC	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
ACCGACCGCGCGACGA	alt_3933_reverse	119	96	151	128	114	146	113	103	109	99
AGTGGGCCCCTACGGT	alt_3933_reverse	28	35	42	36	27	35	30	28	49	18
AGGATGTTGCCAACGG	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGGATTCGCGTCT	alt_3933_reverse	11	7	7	9	4	2	10	12	3	10
TCCGGACCTAGGTGTG	alt_3933_reverse	44	90	40	41	82	40	85	32	74	39
CACACTTGGTCGCTCA	alt_3933_reverse	8	13	17	14	16	11	8	11	15	10
TTAGCTTGATCTCCTC	alt_3933_reverse	37	45	45	42	36	39	52	40	46	56
GTCTCGCTTGCATTCG	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCCTACTTATGTG	alt_3933_reverse	6	9	5	6	8	6	9	3	4	8
CCCTTGTATCAACTGT	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCCACGGTGATTG	alt_3933_reverse	19	18	22	15	20	12	20	11	30	20
GGCGTTTCGGTGGAGC	alt_3933_reverse	36	30	45	43	38	25	42	23	33	22
CTACGGCCAACACTTG	alt_3933_reverse	46	59	64	52	76	47	56	35	60	33
TGTCGCTTGGTTCCAG	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
GCACTATAGCGCGTTA	alt_3933_reverse	23	24	27	29	21	26	26	21	34	29
TGGGAAAATCGATCAC	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCTAGCACGCTGT	alt_3933_reverse	151	152	157	140	160	114	142	120	145	122
CGCATGCTGTCATCTA	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
GTCCATATGTTATCTC	alt_3933_reverse	11	9	15	10	6	7	3	8	6	9
AGTTGCTCTTCAACTA	alt_3933_reverse	30	27	33	31	32	24	34	22	27	30
CAAGCACTTCGTCATA	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTTTGGCCCAGTC	alt_3933_reverse	16	15	33	34	25	24	26	26	26	13
TCTAACTATTGACGTC	alt_3933_reverse	13	15	13	11	12	11	8	6	12	12
CGTGTGTGGGGCAAAC	alt_3933_reverse	29	36	40	31	27	25	37	42	41	34
GCTTTCTCTAACTTCT	alt_3933_reverse	46	31	56	34	31	40	53	37	40	33
ACAGCCAATAAGTGCT	alt_3933_reverse	20	27	21	21	21	11	26	15	24	21
AGAGCTGTTAAACTTC	alt_3933_reverse	27	33	52	33	42	43	43	38	41	37
GGGTAGGCATCGTTCG	alt_3933_reverse	10	10	11	9	7	11	12	8	13	6
TTTAAACGATACTTAT	alt_3933_reverse	9	12	23	19	12	16	16	20	15	3
AACACGTTATGGTCCG	alt_3933_reverse	12	10	11	16	2	6	2	5	5	11
CCTGATGATATAGCTT	alt_3933_reverse	23	37	38	40	31	21	32	27	34	22
GCTGAAGAGGGGCGTT	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTGGTCCGGACTT	alt_3933_reverse	52	48	68	48	41	31	45	47	50	42
GGAGGGTCTTCTTAAC	alt_3933_reverse	43	39	54	48	30	41	40	43	31	48
AGGTCGGTCCCCTCTC	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTTTCTTGACGAG	alt_3933_reverse	44	39	54	43	36	41	37	43	40	52
AGCTCTTATACCGCGT	alt_3933_reverse	46	34	41	35	32	26	45	37	42	26
CGCTCTCGCTCAGAGA	alt_3933_reverse	9	9	6	5	7	7	9	8	16	5
CGAGGTATTACCATTT	alt_3933_reverse	32	35	43	44	30	26	28	37	28	28
ACAACTGTCCTATCCA	alt_3933_reverse	80	90	111	94	94	68	66	82	90	103
AAGTGTGTAACTTTAA	alt_3933_reverse	46	43	78	56	61	47	55	46	65	41
AAGTTAGACTGCCTCC	alt_3933_reverse	41	46	71	54	42	74	58	59	57	46
AGTTTCAGCGAAGTCT	alt_3933_reverse	20	20	23	19	13	19	21	20	25	20
GTCCACTCTCTTATAT	alt_3933_reverse	20	19	22	11	9	10	11	16	17	17
TCGGCGGTATTTAGCC	alt_3933_reverse	40	43	40	32	38	40	33	35	33	26
ATCAGCTACGCAGGCG	alt_3933_reverse	30	31	40	33	19	21	36	28	19	31
CTGAGGAGGCGCAAGT	alt_3933_reverse	40	29	50	35	36	25	32	41	43	32
AGTACCAACTTTGATT	alt_3933_reverse	22	25	24	30	15	15	33	28	14	16
GGCTCTAGGGTTGACG	alt_3933_reverse	2	0	1	2	4	4	0	7	2	10
GGGTGGTTCACTTTGT	alt_3933_reverse	27	36	28	28	39	17	42	29	30	26
TTTGAATTCGCAGAAT	alt_3933_reverse	19	14	15	9	20	11	11	19	11	7
GACCGAGCAAAGTCGT	alt_3933_reverse	25	17	25	12	17	19	15	25	7	22
AGAATTCACCGGGCAG	alt_3933_reverse	0	0	0	0	0	0	0	0	0	0
AGTCGTCCCTTCTCTT	ref_5877_new	7	2	9	3	3	2	10	3	9	5
GTCCTTTTGCCTGGGC	ref_5877_new	17	18	10	14	22	6	12	10	17	16
TGCTGCTTCCGATATG	ref_5877_new	0	0	0	0	0	0	0	0	0	0
CGCACTTCGACTAAAT	alt_5877_new	82	90	79	80	81	64	85	49	88	60
CGTCTACTCTCATTTA	ref_5877_new	18	40	19	14	43	13	30	19	30	10
CGATAGATCATGGTCA	ref_5877_new	29	42	11	15	39	23	52	23	37	24
ATTGGGTGGTCTCTTC	alt_5877_new	30	48	36	34	36	40	55	34	33	29
TGAAAAACTGTGATGG	ref_5877_new	12	32	18	14	29	16	28	18	28	16
GTGATGAGGGTCTTTC	ref_5877_new	8	16	12	9	13	17	27	5	14	17
TCACCGTGCTACGTAA	ref_5877_new	20	31	28	30	25	16	41	17	29	17
CTCCATCAGCTTTAGT	ref_5877_new	86	119	65	78	120	63	103	67	99	56
GGAACATGCTTAGAAC	ref_5877_new	6	9	7	1	17	6	7	4	3	6
GCCACCAAGTTACGGT	ref_5877_new	0	0	0	0	0	0	0	0	0	0
GGCCGTTAATCAGAAA	ref_5877_new	28	47	39	24	42	29	34	30	33	21
GATCCTCATGACTTCT	ref_5877_new	15	21	21	20	24	18	30	20	20	18
GGGTACTACTCCCTCC	alt_5877_new	0	0	0	0	0	0	0	0	0	0
CATGGACTGGCTTGTC	ref_5877_new	67	63	56	60	72	60	81	57	71	56
AAGGATATGCCCTATA	ref_5877_new	83	110	75	76	106	67	90	69	115	54
GGGATAACTCTGGTGC	ref_5877_new	88	152	116	101	121	104	172	93	166	108
AAATGCGGTTCGGCGG	ref_5877_new	83	125	79	96	105	79	117	81	127	70
CATTTTTAGGGAATTG	ref_5877_new	0	0	0	0	0	0	0	0	0	0
CTCTCTCCTCGTCATG	ref_5877_new	1	5	1	2	3	1	3	1	4	0
CTTTCCACCGAGATCT	ref_5877_new	0	0	0	0	0	0	0	0	0	0
GCCTATCCGTTAACTA	ref_5877_new	22	27	19	20	27	9	24	11	19	10
ATTGGACTAGGCGCCG	ref_5877_new	2	7	1	2	4	3	3	3	6	3
GTCTTTCTGTAATAAG	ref_5877_new	54	109	60	56	109	73	106	56	107	63
GTTTTTATATTGTCAT	ref_5877_new	9	17	7	14	19	6	7	6	15	6
GAACCAGTTCATGTTC	ref_5877_new	133	146	109	104	185	78	174	118	162	93
GTCATGGAGCTATTTG	ref_5877_new	10	19	5	9	10	9	8	9	15	5
ATGTCTCATGGTAAAC	ref_5877_new	116	195	164	152	201	123	197	109	196	114
TGATTGGTTCCCTGTA	ref_5877_new	23	45	29	15	36	28	30	24	32	19
GGTCCTTCTGGCTCGG	ref_5877_new	18	15	11	10	12	13	10	6	12	8
TCAGGGTTGCGGTGTG	ref_5877_new	43	91	69	54	105	56	85	63	120	44
TCCCCTGTAACCACTG	ref_5877_new	1	8	0	0	4	0	5	0	5	1
TCCGAAGTTTGCTCAC	ref_5877_new	21	17	23	12	33	11	27	8	24	9
GACAACACCCTTGCCC	ref_5877_new	7	18	11	8	19	13	13	10	13	9
CTCCGACACTACCTAC	ref_5877_new	18	39	23	23	33	20	44	17	27	22
TTCTCACAGGTATTTA	ref_5877_new	12	14	10	13	16	14	15	12	14	11
ACGCTTAGGCCTTATA	ref_5877_new	24	20	18	20	23	20	28	16	33	21
GGCAAGCGGGGTGCAT	ref_5877_new	7	7	9	5	3	3	16	4	10	2
CCCGTAGACTGGCTTC	ref_5877_new	36	52	39	34	75	31	74	28	59	41
TTATTATGCTTTTTCC	ref_5877_new	12	10	19	18	18	14	25	16	28	16
CATATATGTATAATTC	ref_5877_new	0	0	0	0	0	0	0	0	0	0
CCGTCCCTGGAACCAT	ref_5877_new	0	0	4	0	0	0	0	0	4	1
TATAGAGTAAAGCCTG	ref_5877_new	27	31	35	20	30	16	33	17	27	23
TACTGGTTATATTCTA	ref_5877_new	18	36	30	29	34	33	43	24	51	18
CTATATGCGGATGAAA	ref_5877_new	0	0	0	0	0	0	0	0	0	0
GTGCGTCCCTGTGCTT	ref_5877_new	19	20	14	9	24	16	20	14	19	6
CCGGATCGTTGAAGAC	ref_5877_new	0	0	0	0	0	0	0	0	0	0
TCTTGCATCCAGCAAA	ref_5877_new	0	0	0	0	0	0	0	0	0	0
GTCCTGCTGATTTTCC	ref_5877_new	28	50	44	30	45	32	43	17	48	20
AATTGACTAGAAATCC	ref_5877_new	12	23	22	13	18	18	25	10	31	16
GCATTTTCCGCGAAAA	ref_5877_new	36	34	48	31	59	31	49	32	53	37
TCGAAGGGCATGCATC	ref_5877_new	17	26	10	17	15	8	20	12	25	15
AACGCCTTAATGCTCC	ref_5877_new	46	63	82	61	82	39	81	51	69	47
TCCCTCACAACGGTTT	ref_899_negative	27	43	25	26	54	25	42	29	45	23
GGATGCTGGAACCCTC	ref_899_negative	0	0	0	0	0	0	0	0	0	0
CTAGGCCCTGCTATCG	ref_899_negative	1	13	4	9	9	12	11	2	8	8
TCTACTATTCGGTTAT	ref_899_negative	83	172	100	103	146	68	159	68	177	96
GTCGGGATTCATGATG	ref_899_negative	10	16	9	9	11	6	15	10	14	7
GCTTAGGCCCAACACC	ref_899_negative	0	0	0	0	0	0	0	0	0	0
TAGGAGTAAAAAGCCT	ref_899_negative	17	15	15	16	26	14	23	10	17	10
ATCTTGCAATAGTAAA	ref_899_negative	29	39	35	22	56	28	46	15	44	21
ACCATGGAGATTTAAA	ref_899_negative	34	57	36	40	66	37	70	29	64	31
CTGCCGTATCTTTTCG	ref_899_negative	5	18	11	5	30	4	19	8	17	4
CGATCTTGACTCCGGC	ref_899_negative	21	63	21	15	67	11	69	10	72	15
ACATGGCGTTCTACTG	ref_899_negative	0	0	0	0	0	0	0	0	0	0
AGCGTTAATCCTTATT	ref_899_negative	21	13	13	12	22	8	21	13	15	13
GGATCCTCGTAAATAT	ref_899_negative	23	29	27	33	29	22	34	19	34	20
TTATGGATGTGATCAG	ref_899_negative	6	10	5	9	13	8	12	8	10	11
CGTTGCACGGGATATG	ref_899_negative	77	80	80	56	105	76	114	60	121	59
TTTTGGTTCTACCTAT	ref_899_negative	44	83	64	60	105	49	108	59	111	56
CTCGGATAATCGATAG	ref_899_negative	0	0	0	0	0	0	0	0	0	0
ATTTTACGTCCACACC	ref_899_negative	12	20	24	11	32	18	20	12	23	14
GGTTCTTACAAACAGC	ref_899_negative	29	38	31	37	48	28	48	23	49	27
TGCTCCCTCAGGTTGC	ref_899_negative	0	0	0	0	0	0	0	0	0	0
CCCAGAAGATCACCCC	ref_899_negative	84	99	81	68	112	60	133	73	124	75
CTTCGTCGACCCTGAG	ref_899_negative	22	27	16	22	26	7	24	14	22	9
ATAGGCGGGCGATTTA	ref_899_negative	14	27	25	15	28	22	20	21	24	11
CATAGAGGCTCCTTCT	ref_899_negative	0	0	0	0	0	0	0	0	0	0
TACACTTCTCGTGTGG	ref_899_negative	0	0	0	0	0	0	0	0	0	0
TGTTGTGTTGGCGCAG	ref_899_negative	56	109	89	80	103	67	134	75	110	68
CCTGTCCTATGTCTTC	ref_899_negative	0	0	0	0	0	0	0	0	0	0
AGGTGGTGTTACGTCA	ref_899_negative	69	83	75	53	75	58	95	52	115	51
GCTCTAATACTTTGTT	ref_899_negative	94	163	125	96	141	100	142	106	150	82
ATCTCCGCACGGTAGC	ref_899_negative	37	64	46	42	58	41	50	31	65	42
TATACTCCATCTCGTC	ref_899_negative	10	34	9	16	30	13	34	7	43	9
TACCTATGGATGTGTC	ref_899_negative	37	49	35	29	49	34	43	22	44	19
ACATTTGCTCTGGCAG	ref_899_negative	27	47	23	25	47	36	54	26	51	23
ATGTTCTTATACCTAA	ref_899_negative	0	0	0	0	0	0	0	0	0	0
CTCTTGATTTGACACC	ref_899_negative	0	0	0	0	0	0	0	0	0	0
GGGGTTCTAGTTTGTT	ref_899_negative	6	13	10	6	9	3	6	6	7	2
TGGCCGGCCCTCCGCC	ref_899_negative	24	47	14	31	48	18	47	26	82	12
CTATGGGTCGCGTAGG	ref_899_negative	12	27	12	14	24	15	22	13	19	9
TGGGTTAAGTACTACT	ref_899_negative	0	0	0	0	0	0	0	0	0	0
GCCGTTTCGACTGCTT	ref_899_negative	3	12	2	2	10	8	8	6	12	4
CAAGTGGTTTTCTCTT	alt_5966_new	2	9	5	3	2	2	9	1	8	5
CTTCTCTGTCCTTACC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
AGAAGGCGTCGTCTCC	alt_5966_new	4	15	8	3	14	7	18	3	18	8
TTGTTCGCAGGAGTAA	alt_5966_new	0	0	0	0	0	0	0	0	0	0
GTACCTATATCCACTC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
ATGTACTTAATGCTGC	alt_5966_new	8	12	12	3	12	7	17	8	12	6
CAGTTTGCCGTATCAT	alt_5966_new	39	70	49	33	65	23	66	28	74	32
GTCACTAGGTTCCCTC	alt_5966_new	12	36	13	9	31	12	24	10	25	12
TGCCTCGACTGGCGTG	alt_5966_new	10	17	7	15	11	8	19	6	25	4
CCTTTTCTGGTGTGTT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CGCGCTTTGTGCGTTA	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CAGAACGTCCCTTTGG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CGTAAAACATGTGAAT	ref_5966_new	38	58	48	41	112	38	83	48	102	51
TAGCAGCAAGCTCCGG	alt_5966_new	38	70	47	36	54	38	58	32	58	36
GTCCTAGCTCATATCA	alt_5966_new	4	8	3	7	11	11	18	5	21	12
GACCGGTTTATTTAGC	alt_5966_new	8	7	2	5	21	1	8	4	17	2
CGGCAGTACCTTATCG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
GCCCTCGAGTTATCGC	alt_5966_new	15	34	33	17	29	18	37	10	36	14
CTCGATACGCTTCAAT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
GGGGTATATCACGCTT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CCTTTAGAGTCTCATT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CTGTATTTATCGTCCT	alt_5966_new	27	62	33	22	53	22	55	24	51	25
AATGGGGGTTCCTAAC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CGAAATTCCTCGATTT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
AGTGGGGTCTCCTGAT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
ACTAACCCATTACTGT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
TGACAGTTCTTTGTGA	alt_5966_new	3	4	5	2	2	3	5	3	10	8
TTGCTCCTTAATCTGG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CGCATAAGAAAACCGA	alt_5966_new	34	82	50	24	84	26	76	25	90	24
TTCCATCATATCCTTG	alt_5966_new	25	35	27	19	28	18	34	24	24	24
GGTTACCGATTGTGTC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
AGTCGTACATTTGCTG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CGTGCAGCCATACATG	alt_5966_new	5	11	9	5	7	6	13	7	11	2
GATCCTGAAATTTACG	alt_5966_new	1	3	0	0	0	1	3	0	2	0
GTTACTACAGATATAC	alt_5966_new	13	35	32	18	38	19	38	16	45	16
ATGACAGGATTGGTGA	alt_5966_new	27	55	32	27	48	31	39	17	70	22
TTGCGGCCTTAAACGC	ref_5966_new	8	12	3	10	12	11	9	2	15	5
CTTATGTTCCGAGCTC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CGACTGATTTGGTCAC	alt_5966_new	35	39	27	22	49	26	47	23	42	29
CAATTAGGAGTCAGCA	alt_5966_new	38	41	43	32	49	23	48	35	48	23
TAATAAGTGCTCGGGA	alt_5966_new	0	0	0	0	0	0	0	0	0	0
TCGGCGTTGCACTTTG	alt_5966_new	9	20	6	5	13	11	22	7	18	9
TCTTTTCCCCTCTGCC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
TTGCCCAACAAGGAAC	ref_5966_new	34	52	33	29	61	34	56	19	67	28
AATCCAGTATCGCATC	alt_5966_new	2	6	4	3	7	1	11	4	7	2
GACTGTACTCGAATGC	alt_5966_new	12	12	18	13	36	13	21	10	31	12
TCTCTTCTAACATTTG	alt_5966_new	14	28	27	13	22	11	25	11	27	15
GTGCACGTAATGAATT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
TACCTCCCAAAATGAA	alt_5966_new	15	60	16	14	32	17	37	12	33	15
CGTATGTTTGCCTCCT	alt_5966_new	9	42	15	8	43	10	45	12	37	9
CGGTATTATCACTTTC	alt_5966_new	7	8	5	7	8	3	8	5	8	1
CGTTAAGTCATTAGCC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
GTTGACAGGTTCCATT	alt_5966_new	55	91	58	46	88	39	100	43	106	50
TTGCGTAGGTGGGGAT	alt_5966_new	7	18	3	8	11	5	11	4	10	12
ATGGTGTAGTGTTTAC	alt_5966_new	7	7	1	6	4	4	6	3	8	4
ATTTCCTTGTTTAGGT	alt_5966_new	4	4	8	1	4	2	7	2	6	4
AGGTCTACGGGCGAAG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CAGCTGAAGGTAAAGG	alt_5966_new	0	0	0	0	1	0	0	2	1	0
CCTCGCGTTGTGTACT	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CCCTTTTTAGCTTTGT	alt_5966_new	1	4	1	0	5	3	5	1	2	5
TGTACTCGATTTCCAA	alt_5966_new	0	0	0	0	0	0	0	0	0	0
CTTGACTGACGTGGAC	ref_5966_new	17	23	11	18	16	22	13	13	29	19
GATCGGGGGTTCTTTG	alt_5966_new	27	41	22	18	31	18	45	23	43	22
TAAAGTCTCTTGAAAG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
ATGGCGATCCAGATCC	alt_5966_new	53	70	47	42	60	42	73	25	72	35
AATTGCGCCCGACTGG	alt_5966_new	8	16	10	6	20	14	14	14	23	5
ATTCACCGCAGCGCTG	ref_5966_new	18	31	28	31	25	15	40	7	37	21
CTCAACGCGCGAACGC	ref_5966_new	32	50	42	43	79	31	69	23	57	31
CGGATAAGTGCACGCG	alt_5966_new	4	8	3	10	8	5	10	6	12	4
AGCAGTCAGGTCCGTA	alt_5966_new	13	26	35	20	35	28	32	17	38	16
CTTATCCGGATAGCGC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
ATGCGCGCATTGATTT	alt_5966_new	17	41	20	16	25	13	29	15	39	26
GGGACTCGGCTGGCTG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
GTCAGCGTTCAGTCAT	ref_5966_new	28	45	31	39	46	28	37	29	44	16
TATTGAATTCCCACGT	alt_5966_new	7	6	8	2	7	6	6	11	9	6
CTTTGGTCGGGATTTG	ref_5966_new	5	22	12	7	10	11	23	6	21	5
TTGACTAACCGGTATC	alt_5966_new	6	6	8	7	12	4	14	5	14	8
TTTACCTTCGTGGGTT	alt_5966_new	10	20	14	9	32	8	19	11	28	9
CTATCACACGGCGCCG	alt_5966_new	0	0	0	0	0	0	0	0	0	0
TTGGCTTTTCCTCTAT	alt_5966_new	10	10	12	9	29	10	10	3	17	5
GGTTTTACGTAGGTGA	alt_5966_new	9	21	16	7	12	15	22	8	17	13
CAACCCGGTGGGATAC	alt_5966_new	6	27	9	22	28	12	12	11	16	17
GTGGTTGACGTGTAAG	alt_5966_new	7	26	9	12	16	22	16	12	24	6
TGCACGCGCTGCCTTC	alt_5966_new	6	4	8	2	10	4	2	2	3	7
CTTTCCCGTTGCTACC	alt_5966_new	0	0	0	0	0	0	0	0	0	0
AAAACCCCAGAACCAC	alt_5966_new	12	33	14	18	31	16	29	19	33	10
GTTATGGCTTCGATTA	ref_5019_fdr	13	10	17	16	4	10	11	7	13	9
GGACGACCTCAGAAAT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGATTCAGATAAC	ref_5019_fdr	39	39	58	41	26	52	34	26	31	38
GTTCTGTTTTTTCAAG	ref_5019_fdr	65	59	91	75	71	69	78	70	76	85
TAAAAGGGATGCCGCT	ref_5019_fdr	49	50	68	62	54	52	56	55	70	44
GTCTATCCCACTTGTC	ref_5019_fdr	11	7	9	17	4	21	9	6	9	11
ATTGTGTCACGGTTTG	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TCCATGAGCTTGCGTC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CACATCCTTCTGTCCT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTATTTGCGCTT	ref_5019_fdr	47	59	50	38	46	51	44	44	60	50
TTTCTCGATGATCGTT	ref_5019_fdr	13	4	7	4	10	10	13	10	12	17
GGGCACAGAATGTCGA	ref_5019_fdr	2	2	5	4	0	5	2	1	2	1
AGTCCCGACTCTTATG	ref_5019_fdr	10	15	24	22	6	16	17	10	13	3
TCCTTAGAAGGATCGA	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CATATGCCTTGAATAG	ref_5019_fdr	51	53	91	81	58	73	61	77	55	63
CACAGTATCCCATGAT	ref_5019_fdr	19	24	20	21	14	23	22	25	16	19
CCTCTTCATGACTTTA	ref_5019_fdr	15	19	24	10	21	20	15	14	25	17
TCCCCCAAGAGCAAGC	ref_5019_fdr	39	26	40	43	30	40	19	47	48	46
TCCTTACGTTCAGTAC	ref_5019_fdr	52	39	47	61	35	41	34	45	37	36
CAGTGAACCCTTTATG	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CATTTTTTTTACTCTA	ref_5019_fdr	188	138	248	202	114	174	142	221	147	199
GCTTTCTCCCTAATGC	ref_5019_fdr	55	51	55	39	40	42	53	49	51	38
CCATGCGATGCTAGGA	ref_5019_fdr	32	27	42	48	36	42	35	21	41	25
AGCGTGAAGCGGGGAC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CTATCTCGGCGTCTTA	ref_5019_fdr	9	3	6	5	2	6	7	6	4	7
ATTGCGTCTCTCAATC	ref_5019_fdr	114	88	92	82	94	92	80	86	74	80
TCGATTCGCTCCTTAG	ref_5019_fdr	109	52	118	114	78	85	91	85	104	79
CGATTTTGGGTATGGT	ref_5019_fdr	4	6	6	4	6	9	4	7	3	3
TGCACGTTGATCCGCC	ref_5019_fdr	60	32	71	48	48	51	39	52	38	28
GTTTATACGATATCCA	ref_5019_fdr	6	10	13	5	11	14	10	18	14	8
CTATATGGGGCTTCTG	ref_5019_fdr	74	58	98	63	54	64	53	81	47	70
GGGCTCGTTCTCGCTT	ref_5019_fdr	51	34	56	66	43	45	30	48	59	42
CGGTTTTTCTCTCGTG	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGTGTCTGTCGAG	ref_5019_fdr	26	18	38	22	25	28	37	19	41	46
AGCTGTATTCAGTCGG	ref_5019_fdr	29	15	31	22	13	39	19	24	19	14
GAGAGGCTGGCGTCAT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
ACGATATATGGCCTTT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTACGTTGCCTGA	ref_5019_fdr	48	29	46	48	41	35	37	42	32	33
GCTCGCAGCGCTTAAG	ref_5019_fdr	38	30	48	43	20	33	37	47	47	35
ATGTTATGATTCGGCC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCTTGGCCTAGCC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGTCTTCATTATC	ref_5019_fdr	14	5	9	9	8	5	4	7	4	4
GCAGCTTGTCCTTCAC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGTACTCCTGTCG	ref_5019_fdr	25	47	47	32	26	28	44	27	24	17
AGTCTGGGCTGATCAA	ref_5019_fdr	98	74	84	95	58	74	60	76	74	79
TGAGTTAGGTTATAAT	ref_5019_fdr	11	14	14	6	7	10	17	7	9	12
TTTGACGGTGTAACCT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
ATAGGCTATTGCACCG	ref_5019_fdr	58	68	86	68	58	54	75	45	56	52
ACTAAAAGTTGTGCTT	ref_5019_fdr	107	93	111	90	75	102	68	99	96	86
TTGGTTGCATAGTTAT	ref_5019_fdr	60	62	100	81	73	73	91	68	65	68
TTCCTGTCTGACTTAT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
ATCATTGCGCCGGCTC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GGGTAAGTTAACAAGT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTTCTATGAGTAA	ref_5019_fdr	1	1	2	3	2	2	5	4	0	2
TCACCGTGATTCCGTT	ref_5019_fdr	32	19	34	26	20	26	24	28	25	16
AATTTTTGGGTTAGAC	ref_5019_fdr	9	13	41	25	14	23	16	21	9	13
ACGCAGATGGGCATGT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GTCACCATCATCTTTT	ref_5019_fdr	119	94	160	163	105	127	104	131	87	128
ATAAGGGGTGTGTAAG	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTCACGGGGTTGT	ref_5019_fdr	25	31	34	45	31	36	33	28	30	24
TTATAATTCGCGCGTA	ref_5019_fdr	6	10	20	15	14	21	12	18	17	14
TATATAACTATCTAGC	ref_5019_fdr	53	40	63	51	45	53	46	42	44	39
ACTCCAATTCTCAGTA	ref_5019_fdr	21	24	32	34	30	36	22	26	31	25
CAGTGTTTACTATATG	ref_5019_fdr	7	8	3	9	7	4	7	12	7	2
TCAAGGGCTTTTGTCT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGTAACTTTGAAC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GACCTTAAGATTTGTC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCTCGGAACTGTA	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
ATACCTTACACACGCT	ref_5019_fdr	0	0	1	1	0	1	0	0	0	0
ACAGTTCGGCAGCTAG	ref_5019_fdr	9	15	15	20	11	9	16	14	13	8
ACCTTTCATCTTTCCC	ref_5019_fdr	45	45	52	40	55	40	52	49	43	40
TTGCGCAGAGTACTTC	ref_5019_fdr	8	4	7	5	6	4	3	5	5	3
GTGAAGATTTAAATTA	ref_5019_fdr	26	21	30	28	29	24	26	17	30	24
GCTTGCGCCTCTAACC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GTATGTTATACTTACT	ref_5019_fdr	53	49	67	59	77	38	88	51	88	46
CGTCCCGTATTCGTTC	ref_5019_fdr	9	10	12	5	5	9	8	12	15	7
AGCGTCATCCGTGGAC	ref_5019_fdr	22	16	29	25	22	23	21	27	22	36
ATTGCTTCTATTAATC	ref_5019_fdr	23	21	22	19	17	27	21	14	26	19
GGAAACAAGTTTTCCC	ref_5019_fdr	13	10	14	5	5	10	7	8	13	16
CATTTTTTTACTCTAA	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCGCGAACAACAC	ref_5019_fdr	28	36	48	41	33	42	35	49	44	40
TTGGGAGTGTACAGAG	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
GTATAAGCTCTCGGGA	ref_5019_fdr	6	2	3	8	8	8	4	8	6	8
TACCTTCTCCTTAATG	ref_5019_fdr	26	28	57	35	17	43	27	33	29	37
TCGTTGTTTGTTTACA	ref_5019_fdr	39	32	47	39	17	33	31	42	34	50
GGTCTCGCATTCACGA	ref_5019_fdr	17	20	22	24	19	19	22	25	17	17
GCGTCACGTTCGCCCA	ref_5019_fdr	34	20	23	32	27	27	26	35	28	24
CGGCTGTTCGGGGTAA	ref_5019_fdr	221	193	301	251	200	189	182	207	184	216
AACTTTGCTATCACCC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
ATTACCATCGACGCCG	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CATTTGTTTGTTGATG	ref_5019_fdr	116	109	192	121	115	136	91	134	114	102
CAACGGCGGCATTGAT	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CACACCCTGTTGACTG	ref_5019_fdr	19	16	15	24	19	12	26	17	23	11
TCTTGGTTAGTCTCGT	ref_5019_fdr	63	45	56	46	47	50	40	40	42	48
GTTTCGCATCTCCGGC	ref_5019_fdr	147	93	151	141	108	125	98	126	115	112
TTAGATATTCGTATAT	ref_5019_fdr	31	12	38	32	23	27	20	33	18	17
GGTGAGTGAAGTTCTC	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
TCTAAGCTTTGAGTAT	ref_5019_fdr	71	59	64	52	58	54	53	71	50	60
ATTCAACAGCCCGGAG	ref_5019_fdr	173	144	204	177	154	151	162	188	161	123
CTGGACGGTCAGCACG	ref_5019_fdr	20	26	32	34	24	34	25	33	26	36
AGACCATTAATTCCAA	ref_5019_fdr	33	20	35	29	15	25	22	28	26	20
TGATTCATAAGGCCGT	ref_5019_fdr	18	13	14	13	12	23	10	9	8	13
TGAGGTCATCCTTGCA	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
AGGCCTCAGCACGTGC	ref_5019_fdr	85	60	90	54	45	77	67	63	56	70
GAGCCCGATTTAATCT	ref_5019_fdr	12	9	15	19	16	14	18	9	15	22
ATCCACAAGGAACCCA	ref_5019_fdr	117	82	152	137	103	115	121	143	111	109
GATGTAATCTAAGGGG	ref_5019_fdr	4	6	4	13	7	9	9	4	7	5
TCTTCTTCACAATTAA	ref_5019_fdr	0	0	0	0	0	0	0	0	0	0
CTCATTCTGAGCATAA	ref_5019_fdr	3	5	5	6	2	6	2	4	4	3
CGTCTGGTCCTCTACA	ref_5019_fdr	37	26	33	31	22	28	28	26	26	34
TTTGTCTCGGTTCCGA	ref_5019_fdr	25	10	24	29	17	20	14	9	18	10
TTCGCAAGCAATGGAG	ref_5019_fdr	45	21	39	26	18	32	27	22	22	32
ATAGACTCTTGATCTT	ref_5019_fdr	27	22	35	34	17	26	23	29	22	21
GTGTTAAGTCGCTCAT	ref_5019_fdr	99	103	127	107	104	112	96	89	114	95
AAATCTTTTAACGATT	ref_5019_fdr	31	22	30	36	32	33	21	28	26	30
CGGTTCGGTAACTCGT	ref_5019_fdr	55	39	67	50	44	45	42	53	42	56
CTATCGTCTGGGGGAG	ref_5019_fdr	111	104	104	132	88	115	121	101	100	89
GAGATGGCCGGAAGTA	ref_5019_fdr	17	13	7	11	13	8	4	7	14	7
ACCCGTTACTGTGAGT	ref_222_fdr	4	2	1	0	4	2	2	3	0	2
TATGTAGGCCGTTGAA	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
TAACTTTGCGGTCTTC	ref_222_fdr	14	14	18	11	9	15	9	12	7	14
CGGAAAACATGAGGTT	ref_222_fdr	73	104	102	84	106	92	100	71	118	70
TGTTCTTGGCATGATC	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGCGTGTTATTTA	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CCCCATCTGATTGTCA	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
GGCTGGGTATAACTAT	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCCCGACGTCTTT	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CCGAGGGAGTACAGTT	ref_222_fdr	13	19	21	12	22	15	22	12	25	8
CCATTAGCTTCACTCA	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
ATTTACCAAAGTCCCA	ref_222_fdr	17	13	11	6	19	9	15	10	23	10
GCTTACGTTAACAACT	ref_222_fdr	13	14	17	14	19	14	31	15	23	13
CTTTGCCGCTTTGCCT	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
ATCACCTTAACTTTTT	ref_222_fdr	30	25	45	41	45	30	39	40	44	18
GGCCTTTTTGAAGCGA	ref_222_fdr	10	8	5	4	9	5	9	6	15	7
CGTCGCTTGGGCCAAA	ref_222_fdr	40	45	39	47	65	34	63	25	58	29
CCTTCCTCAGCCCCTC	ref_222_fdr	11	18	13	16	19	9	17	10	18	12
ACTATAATCGTATCTA	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
AAAGTCCCGATCCTTC	ref_222_fdr	25	27	24	21	20	19	30	30	28	17
ACTTGTCGTCCGGACG	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGGCGCCACTTCA	ref_222_fdr	91	149	131	112	147	89	142	99	151	89
TATGTGCTCGGCGCAG	ref_222_fdr	39	65	41	44	67	38	52	52	63	35
TTACCACCTGTTCCTC	ref_222_fdr	95	168	106	117	163	77	164	61	151	91
ATTATGCATCTAAGAT	ref_222_fdr	51	87	81	55	79	60	105	59	90	55
CAGGATTCTAGTACAC	ref_222_fdr	3	11	5	6	9	5	11	3	17	4
TGCGTCTTAAGTATTA	ref_222_fdr	8	8	9	7	6	3	9	5	11	5
CACGGCGTTTTGTCCG	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CGACACAGCGCAAACG	ref_222_fdr	15	22	21	14	20	19	16	16	32	15
GTCTTCATCCTCCTGC	ref_222_fdr	9	4	7	6	9	5	3	6	4	5
GTACTACCCTATGTAG	ref_222_fdr	37	73	37	43	57	52	78	38	80	37
TGATGCCTCATGCCCA	ref_222_fdr	45	67	43	34	54	38	47	47	70	31
CTTGTGGTGCGCTTTT	ref_222_fdr	0	0	0	1	0	0	0	0	0	0
ACGCTTAGGACGCTAG	ref_222_fdr	14	19	14	10	18	8	24	7	21	7
CATCGAGAGTAGTCAG	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CGTGAAGTGGGAGGGG	ref_222_fdr	35	91	52	51	81	55	97	52	92	41
ATCGTAAGGGCAGTGC	ref_222_fdr	32	41	38	37	45	28	42	32	34	31
AGTATTCTCCTATTTT	ref_222_fdr	35	49	45	35	65	56	39	30	58	29
TTTAACTGGTGATAAC	ref_222_fdr	9	28	19	17	32	18	29	12	38	23
CTGTTGGTGTAATTCT	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CAACTACCGACTGGGT	ref_222_fdr	20	27	22	19	24	20	21	12	28	14
TTTCGACAATTCGATG	ref_222_fdr	16	19	19	14	10	13	21	12	12	6
CTAAACGTCAGTGTGA	ref_222_fdr	33	48	33	31	40	26	43	23	49	23
TTTCGATGCCCTGTTT	ref_222_fdr	47	69	47	54	62	53	77	42	69	54
GCGTGTCCAGGCGGTG	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
GCAAACAGTACGAATC	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
TTACACCCCCTGATTT	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGCTAGTACTTGT	ref_222_fdr	49	71	59	61	82	50	74	53	81	46
ACTTCAGAGGTGAAAT	ref_222_fdr	8	4	6	10	11	7	11	14	10	5
TAATACGGCGGAATCA	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
ACTGAAGATATTGAGT	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
GACGTTCTAAGCAGTC	ref_222_fdr	26	62	48	29	65	31	56	28	39	23
GCAATTGTTTAGGCAC	ref_222_fdr	7	16	7	8	14	14	12	3	13	8
GGATTCATTTGTAGCC	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CATGGTCTTCGGTTGG	ref_222_fdr	44	37	45	40	51	37	72	41	59	38
TAATGAGTGTCCAGGT	ref_222_fdr	66	70	87	65	60	56	73	56	80	54
GACACACTTAGGGGTC	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAGGCTCGGTGGC	ref_222_fdr	38	57	44	56	60	33	52	37	51	34
TGTCCTACTCTACTTA	ref_222_fdr	27	34	35	22	26	20	43	17	49	22
AGGTTTAAACGTACTT	ref_222_fdr	121	214	141	133	174	124	202	102	206	113
AGAGGGGACTGCTTGA	ref_222_fdr	10	14	18	10	22	11	25	12	21	12
GAACTACAGAGGGTGA	ref_222_fdr	3	7	8	9	11	9	17	10	10	13
GTTGGTAGAGCGACAG	ref_222_fdr	31	24	13	29	23	10	21	15	35	13
ACCTTACGCCTAAAAT	ref_222_fdr	180	278	237	214	280	195	313	164	311	201
GGACTAAGTCAAAGCC	ref_222_fdr	46	88	76	47	89	43	66	48	92	48
ATCTAGGGCTTAACCC	ref_222_fdr	44	72	46	51	60	41	59	52	69	30
CCAACGCAAATCCTGA	ref_222_fdr	13	21	21	17	18	13	24	21	22	15
GGCGCGCACTACGCTC	ref_222_fdr	12	14	17	16	10	20	16	13	12	21
TAATGTATTATGATCG	ref_222_fdr	22	37	34	12	24	15	25	17	21	12
GGTATCCAGTCCGTAT	ref_222_fdr	24	32	33	32	29	28	45	23	29	22
CGTATTTTTAACGTGG	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGCGTAATTGTA	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
CTGGTTAATTGGTTAG	ref_222_fdr	35	33	31	42	49	25	47	30	52	30
CCAGTGTCTGAGCGGG	ref_222_fdr	40	51	55	43	60	48	74	44	62	48
ATCTTATATTACCAGA	ref_222_fdr	16	17	21	17	24	14	27	17	26	13
CAAGACGGAACTTATA	ref_222_fdr	2	2	2	4	2	0	1	0	2	0
TCTGATGTTATGGGGT	ref_222_fdr	214	320	232	211	316	222	328	226	304	208
TGTAAAGAATGTCAGT	ref_222_fdr	5	6	3	6	7	4	4	1	5	1
AATTAGTGTCAAGGAA	ref_222_fdr	65	66	90	83	72	63	91	60	98	54
GTACTGTTAAGCTCGA	ref_222_fdr	7	27	10	14	17	12	19	11	24	11
CATCTCTATTCTCTTG	ref_222_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGTGTCTCGCTTC	ref_222_fdr	11	11	12	14	23	13	22	13	22	10
CAAGGAGTTTACAGGT	ref_222_fdr	58	91	67	59	72	42	86	51	75	38
ATCCATTTAATTGGTG	ref_222_fdr	32	81	66	40	65	55	71	43	86	42
TTCACAGGTTCTGGTA	alt_3643_RC	4	2	1	3	7	3	11	3	5	7
GAATGTGTTGCATGTA	alt_3643_RC	15	20	18	10	13	16	18	14	26	14
GCGTACTCATGAGGCG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TTTACACTGTCCTTCT	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TCATGTTCCTGAAGGG	alt_3643_RC	19	47	21	15	42	27	41	20	43	18
CCCCTTCAGGCATGAT	alt_3643_RC	27	41	39	28	44	39	46	25	37	26
GGTATGGACTGCATTG	alt_3643_RC	3	2	5	1	3	5	4	0	4	0
CTTGATTTTAGGTTCT	alt_3643_RC	5	12	5	7	12	1	12	0	17	5
CCTGCAGCAAACTCAG	alt_3643_RC	41	78	47	34	49	52	78	47	65	28
CGGATACGTTGTTCCT	alt_3643_RC	15	25	18	15	36	14	33	17	25	9
GGTTATGGCTAATGTA	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
ATTCTGCAGCCCCGTG	alt_3643_RC	12	19	16	18	24	6	32	15	29	9
GGTTCAAAGGTGGACC	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TTGTGCTCCTCTTTAT	alt_3643_RC	3	11	4	4	9	2	7	4	2	4
CCCCTACTGCCCGATC	alt_3643_RC	28	46	29	30	45	33	46	26	31	19
AGCCAGTCGAATTGCT	alt_3643_RC	20	35	24	14	27	26	46	25	51	19
CGTTCCGGTACTTTCG	alt_3643_RC	8	13	5	6	15	6	3	5	15	4
CTTTCGGCCTGCCTAG	alt_3643_RC	40	58	52	48	74	48	83	36	77	39
TAGCGTGAGGACGCTT	alt_3643_RC	9	14	6	3	12	10	7	6	12	15
CTACAGCGTACACCGT	alt_3643_RC	9	11	9	2	15	6	20	5	10	8
TTTCCTATCATGGCAA	alt_3643_RC	12	15	10	6	10	6	17	13	11	6
GATTAATTTGGCTAAA	alt_3643_RC	61	87	50	59	97	52	105	64	104	40
AAGCGTCACGGCACGG	alt_3643_RC	2	5	5	6	6	4	6	3	6	3
TAAAATTGATCATTGA	alt_3643_RC	51	98	49	74	102	52	101	55	117	37
ATCCCATCCTTGCCAA	alt_3643_RC	8	4	5	3	13	6	13	10	9	2
GCCTCATTCTGCATTT	alt_3643_RC	12	20	19	9	17	10	21	13	18	7
GCTCAGGCCTATTTGG	alt_3643_RC	10	8	4	4	5	3	10	7	13	1
GATTCATTCGAGTGTG	alt_3643_RC	105	203	96	99	183	98	201	94	174	83
TTGATTTCCAATTGGT	alt_3643_RC	18	22	16	20	34	8	30	14	32	14
CTTTTATATTTTTCCC	alt_3643_RC	51	72	61	45	60	60	71	53	66	69
ATGCGCGGTCTCCTTC	alt_3643_RC	12	22	23	21	22	23	25	23	33	22
TTTTGCTTCGGCTCCT	alt_3643_RC	5	9	8	7	4	2	5	4	9	2
TATCCGGCGAGGTTGC	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
CATCTTTGTGTATGCC	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TTCCGGTCGCCTAAGC	alt_3643_RC	3	2	0	0	3	1	3	1	1	1
GACTGTAATGTGTTCG	alt_3643_RC	15	13	10	6	21	9	22	8	12	7
ACATTACTCAACGTTG	alt_3643_RC	37	42	41	46	57	29	41	28	50	33
TTCCCTTTACATCGTA	alt_3643_RC	31	44	28	33	40	34	45	29	59	33
TAAGGTCCGTCCACTT	alt_3643_RC	127	206	131	143	186	126	217	128	178	119
AGAGACACGATCTTAG	alt_3643_RC	4	7	10	5	6	2	7	2	4	5
TAGCTGATTTATGCAT	alt_3643_RC	29	30	20	24	28	23	35	19	32	16
TTGACGCCCGTGACTA	alt_3643_RC	27	26	12	18	30	16	23	17	27	16
CGCGAGTAGTATAGGT	alt_3643_RC	51	68	56	42	91	48	77	49	71	39
GTTTAGCTCTAGCTCA	alt_3643_RC	20	80	23	25	59	23	62	15	55	15
TGCAAATTCTAACTCC	alt_3643_RC	35	42	33	29	62	25	58	29	50	32
GGCGGCCGCTATGGCC	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
CTAAGTATTCCAAAGA	alt_3643_RC	21	25	13	16	26	14	28	14	36	20
AGACACGGGTTTGCAT	alt_3643_RC	8	28	22	11	18	13	22	8	33	7
ATCGGACATGAGATGC	alt_3643_RC	54	96	83	58	97	68	98	51	90	61
GTCTTTGCTAATAGTG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
CTGTTTTCGTACCTCG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TACTAGCGGGCAACCC	alt_3643_RC	29	54	49	39	64	38	70	28	73	30
GTTCGTCAGTGGCTGG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TTAGTCGCTTGCTACA	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
ATGTCTGTAACGTAGG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TATTGGATGGGCCATA	alt_3643_RC	26	36	35	22	50	29	42	30	33	19
TGTTTTACGACTCGAC	alt_3643_RC	3	7	3	2	3	1	5	1	3	2
CACCTGGACGCTTATT	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
ATAACATTAGTAAAAG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
AATCATCTATAGAATG	alt_3643_RC	13	20	12	16	15	10	13	16	23	16
GATCCCAGTCTCTGAC	alt_3643_RC	15	21	18	8	7	8	13	8	20	6
ACCATGTTAGCATCAG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
ATTTAAGGCCGTTTCG	alt_3643_RC	9	19	12	7	5	7	20	10	19	7
CCTCCTGTTTATTTTG	alt_3643_RC	21	42	30	37	41	16	35	18	34	15
CATTTCGCGGCCAACC	alt_3643_RC	8	10	10	10	19	9	11	5	23	9
CGTCGTTCGTAGTAAT	alt_3643_RC	40	78	42	37	67	31	85	47	70	30
AAATAGTACTTTACTT	alt_3643_RC	29	51	31	33	38	27	47	31	48	30
GTACGCTTGTATTTCC	alt_3643_RC	61	93	81	62	96	46	116	55	140	53
TACTCGATACATAACT	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
CCTTTGACTTTGAAAT	alt_3643_RC	10	42	19	13	35	13	37	14	24	11
CAAGTATGGACACCTG	alt_3643_RC	24	30	31	21	43	15	42	25	39	26
TGACCTTAAGTTCAAA	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TTCGGGCGTCTAGTTT	alt_3643_RC	34	63	46	40	69	33	63	35	71	34
TTGCCGGTAAGTATTC	alt_3643_RC	7	5	5	4	7	6	6	4	10	0
ATACACTTCGACCATC	alt_3643_RC	6	13	7	8	9	1	20	5	12	9
TGCAGCATACTTGCAT	alt_3643_RC	5	7	11	9	15	6	9	6	14	9
GATCGGTCTCTGAAGG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TAACGATAGTGCTTGG	alt_3643_RC	17	20	21	14	25	19	19	10	29	14
TGCGCCGTGGCCCTAG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
GTCGCATGCTCCGAGG	alt_3643_RC	8	10	11	3	21	13	11	4	12	10
GGTAGTTGACCTAATG	alt_3643_RC	73	92	69	69	112	85	91	58	103	71
TGTCGAGCCCCCCCTC	alt_3643_RC	15	19	20	12	16	22	20	13	21	12
GGTTACTCCCGACTGT	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
CTTGAAGGCTCCTCTT	alt_3643_RC	5	12	13	12	12	9	13	12	21	6
TCTGGCGTAATTAGAT	alt_3643_RC	21	29	28	10	28	6	25	9	29	8
TATGCTCCTGTCCGTC	alt_3643_RC	38	65	70	48	72	43	75	43	82	46
GGCTCTTTATTTCATC	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
ATCGAACGTTAGTTAA	alt_3643_RC	11	23	19	27	19	15	21	7	16	10
GGCGAAAGTCCACTTA	alt_3643_RC	12	25	19	17	34	18	25	22	32	10
TGGATCCGTGAATCAT	alt_3643_RC	3	3	3	0	5	3	4	0	5	1
CTGTCCAAACTCCACG	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
ATTCTGTCTTTTTCTA	alt_3643_RC	56	84	77	61	90	56	89	45	79	52
CGATTGCGGCTTTGGT	alt_3643_RC	36	38	44	23	34	28	56	32	43	28
GTACTCCAGTGTGGGC	alt_3643_RC	23	33	39	14	42	22	33	18	39	19
CATGTAGCCAGCGACC	alt_3643_RC	0	0	0	0	0	0	0	0	0	0
TGCGGTCATGTGACGT	alt_1105_upstream	5	7	6	3	5	2	1	8	3	2
TCTGTGATTTACAAGT	alt_1105_upstream	1	3	6	2	4	2	5	3	8	2
GCAATTCTTGTTGCTA	alt_1105_upstream	6	15	9	5	8	8	5	9	8	2
CTTACGTCGGCTATCA	alt_1105_upstream	63	68	78	65	92	59	99	61	99	51
GTCTTGTGTCATATGA	alt_1105_upstream	16	15	19	14	22	10	15	12	33	13
GAATAAATCCCGCTCC	alt_1105_upstream	1	3	2	5	2	2	6	5	4	3
CCCATCCCCTGAGGGG	alt_1105_upstream	3	8	7	8	2	9	8	1	6	1
CTACCCATTAGCGTGT	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATGAGTTTGGTT	alt_1105_upstream	9	14	17	6	14	7	9	11	10	10
TAAAGAGTGGTACAAG	alt_1105_upstream	1	1	3	5	6	2	7	5	3	1
GATCGATGGGATATTG	alt_1105_upstream	10	16	11	19	18	12	14	15	20	7
GTGCCCCTCCTCTTTA	alt_1105_upstream	0	0	1	0	1	0	2	3	1	0
CCAATCAAACTAGCAA	alt_1105_upstream	20	16	18	8	34	11	27	16	21	10
GACACGTTAGTATAGC	alt_1105_upstream	8	14	13	8	12	4	6	12	12	8
TGGTGAGGCCCCGTAA	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
ACATCTTGTTGGTTGA	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCTGAGGAGTGGG	alt_1105_upstream	12	11	11	12	15	10	13	15	11	8
CCAGCGTGAAATATTT	alt_1105_upstream	3	10	1	2	17	4	15	0	17	3
GGCTATCCAGTCACCC	alt_1105_upstream	11	15	19	17	15	6	24	15	21	14
GGTGATCTTTCAAGGG	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTGGTAAAGGCGT	alt_1105_upstream	7	11	17	17	14	13	14	16	12	12
GTCTGAGGTTATAGAA	alt_1105_upstream	15	20	19	16	18	9	19	19	25	14
CGTGGTGTCGTAGAGC	alt_1105_upstream	4	5	3	7	4	3	2	2	5	2
TTCGCGTAGAGGTAAT	alt_1105_upstream	25	20	42	29	26	21	31	19	43	12
TTACTCTTTTTTTTAG	alt_1105_upstream	8	17	13	12	7	9	12	7	10	9
GGGCCGTCCGTAAATA	alt_1105_upstream	37	38	42	30	45	19	37	37	41	25
ATTATAGCATATGTCA	alt_1105_upstream	19	29	23	28	24	20	29	28	41	21
ACTGGTTAGAGTCGCT	alt_1105_upstream	7	6	5	8	7	6	12	9	14	7
TCACTTGACTTAATTC	alt_1105_upstream	11	11	15	15	20	13	9	2	15	14
TTCTATCAAGGTGATG	alt_1105_upstream	5	7	3	9	12	7	5	2	9	1
GTGCCATGTTTTTTTC	alt_1105_upstream	19	25	35	24	20	33	28	25	36	22
ACGAATGGAGCTCGTC	alt_1105_upstream	35	38	41	33	44	35	53	37	45	41
GATGAGCGTTTCCTCC	alt_1105_upstream	133	192	162	167	172	121	226	116	209	126
CATATGCTGTCACACC	alt_1105_upstream	18	30	28	19	23	9	26	17	27	15
AATGGACACGTCCCCC	alt_1105_upstream	1	0	2	0	2	0	2	1	1	1
GCTTAGCTGGACGCGC	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
TGTAAACTACTCGAAC	alt_1105_upstream	7	10	11	12	11	8	15	12	10	15
TCCGCCATACCTTCCA	alt_1105_upstream	8	9	14	13	6	6	3	9	17	4
GGTAAGAATTTTACCT	alt_1105_upstream	77	125	89	73	111	55	144	70	130	57
GTTCACTTCCGTCATG	alt_1105_upstream	54	79	39	36	70	32	81	29	97	50
ACGCATTTACAGTGCA	alt_1105_upstream	10	17	15	7	12	9	11	8	17	13
TAAACTGATGGGGTAG	alt_1105_upstream	53	78	75	66	85	52	79	63	91	62
GTATGGTCAGCACCTG	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
GGCTGCTCAGCTACAG	alt_1105_upstream	8	2	1	4	6	5	1	6	8	4
ATGCATGGGCGTTATA	alt_1105_upstream	53	48	45	38	56	36	45	32	55	28
GTTCCTGCTTGGTTAC	alt_1105_upstream	46	55	61	32	47	55	42	35	58	33
TCAGATTCAAGCCGCG	alt_1105_upstream	63	76	77	69	72	60	67	63	102	67
TCAGATTCACGCCGCG	alt_1105_upstream	0	1	1	0	0	0	0	0	0	0
CTCGCTGGCTATTCCT	alt_1105_upstream	143	164	151	141	202	118	170	134	170	118
GCGTCGTATTGTCGTC	alt_1105_upstream	70	64	74	70	69	69	70	63	92	63
TCGTACGAGGGCTATA	alt_1105_upstream	29	62	40	40	61	41	71	40	43	40
TACGCACCCACGCCCC	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCAATCTGCGATA	alt_1105_upstream	23	66	22	23	56	27	59	20	68	19
ACGTGGGCTGATCCAA	alt_1105_upstream	4	7	7	9	12	4	16	15	17	11
ATATGGACTTTAGGGT	alt_1105_upstream	19	30	20	26	30	24	29	21	29	21
TAAATGTTGTGGGGCC	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
CTGATTTCAGCAAAAC	alt_1105_upstream	59	73	47	45	68	59	59	58	79	43
AGGTAGACATCATGCC	alt_1105_upstream	19	29	35	27	37	17	32	23	31	16
CTCGACAAAGGACCGT	alt_1105_upstream	297	325	329	323	382	262	373	216	338	268
GGTGCTTGATTATTGT	alt_1105_upstream	17	20	13	8	18	9	24	11	18	9
GCTCAGTTTGTGCCCT	alt_1105_upstream	2	2	1	1	3	2	5	2	5	3
ATCAGAGTTGTAGCGC	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
TAATGCGCGTCGGGCT	alt_1105_upstream	23	43	30	25	35	16	40	24	35	28
TGCAAACATAAAGGTT	alt_1105_upstream	32	27	33	17	25	23	43	18	34	23
GTTTCTCAGCCGGTTG	alt_1105_upstream	20	24	15	14	28	14	22	15	23	10
TGCAAAATCCATACCG	alt_1105_upstream	2	3	2	1	2	1	1	2	2	0
GCCCTTAAGATGAGAT	alt_1105_upstream	16	14	12	10	19	13	24	14	13	12
CTCCTGGGAGTAATCT	alt_1105_upstream	4	3	2	5	4	6	2	4	10	1
CACCTTATTACGGGGC	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
TATAGTTCTGCTGGAG	alt_1105_upstream	89	99	100	76	93	78	91	77	89	66
GTATACTCTGAGCAGG	alt_1105_upstream	13	30	24	17	25	20	18	21	26	14
GATGTTTCAGGGCTTC	alt_1105_upstream	35	56	48	25	47	35	41	50	52	23
GTTTTGCATGTCAATG	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
AGTGTGCACGCTGCTC	alt_1105_upstream	26	38	29	24	25	25	28	17	23	15
CATATGTTGATCCCTG	alt_1105_upstream	33	33	48	30	32	23	53	20	48	13
TTTTTCCTGTAGTAGG	alt_1105_upstream	17	18	14	10	29	18	8	12	28	10
CAGTGATTGCGCGCCG	alt_1105_upstream	90	147	138	126	157	119	166	113	147	98
CAGCCGGGTTTTCGCC	alt_1105_upstream	6	29	5	0	27	5	27	12	33	4
AGAAGAAAAGGTGCAT	alt_1105_upstream	33	66	34	55	63	54	66	33	56	42
TTCTCCCTTTTCCCTT	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
GTGCAAGAATTAACTG	alt_1105_upstream	9	23	19	10	14	11	17	7	11	14
CAACACCCTGGCTATT	alt_1105_upstream	7	4	6	5	5	4	3	3	4	4
CGGATGCACGCGCATT	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
CGGGGGCACAGTTCCC	alt_1105_upstream	0	3	1	0	2	1	1	1	0	0
ATGTGTGTTCCCAAAT	alt_1105_upstream	18	22	10	11	12	10	20	14	13	11
CAGGTGCGGTTTCTAC	alt_1105_upstream	3	12	5	9	8	1	6	3	7	3
CTCACGTCTCGACTAC	alt_1105_upstream	9	11	10	10	22	16	19	10	14	8
GTGTGGCAAAGGTACG	alt_1105_upstream	3	10	8	7	5	4	8	7	10	4
GCGGGCTCGAATCCAT	alt_1105_upstream	15	9	13	7	9	8	11	10	10	11
TATCTTCACATAATTT	alt_1105_upstream	36	44	49	46	58	52	58	47	66	53
AGGCTACGAATTCGCT	alt_1105_upstream	15	21	24	19	29	11	27	8	35	20
CACTGCTTGTCTATTT	alt_1105_upstream	10	11	13	16	13	13	22	8	17	14
TACATCTCTGATCTAG	alt_1105_upstream	0	0	0	0	0	0	0	0	0	0
CTCATGCGCTTGTGAT	alt_1105_upstream	27	31	31	27	35	35	54	22	45	34
TGGTTTATTTCTATCC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCGGGCTAAACCT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCTAATCACCTCGGCC	alt_3933_upstream	45	81	66	58	105	43	63	54	99	50
TCCAAGAGTTTTTTCA	alt_3933_upstream	15	19	22	12	20	7	28	6	22	10
GTCAGCATCGTGTCAA	alt_3933_upstream	4	4	3	1	0	2	5	3	1	1
CTATCTCTTCGCGTTG	alt_3933_upstream	17	21	18	18	18	5	24	12	33	17
GGTCCGTTCGGAGTCC	alt_3933_upstream	32	24	20	25	28	20	29	19	30	25
CTTCTTGACTTGCGCG	alt_3933_upstream	6	7	15	9	15	5	10	10	7	5
CCAGTATTAGTACAAC	alt_3933_upstream	4	14	4	2	16	7	21	3	11	6
CGACAGTACTTGTCCA	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCTAAGACTTTCT	alt_3933_upstream	20	16	18	14	21	23	19	16	12	12
ACGGCCTAAAGTAGCC	alt_3933_upstream	14	15	13	8	13	12	16	13	22	19
TTTACGAATCCTCAGG	alt_3933_upstream	26	35	23	29	41	17	38	30	46	24
AATAGTAGTCCCCCAT	alt_3933_upstream	60	38	62	71	60	68	71	59	77	36
TGTTACGCGCTCGCAC	alt_3933_upstream	14	13	11	13	14	11	21	13	13	9
CGTGAGTCTTTCTGTT	alt_3933_upstream	13	21	26	23	38	22	35	26	40	13
TTTCAATGTCCTGATG	alt_3933_upstream	52	61	64	59	44	49	71	39	72	54
TTTCAAATTAACCATA	alt_3933_upstream	5	4	8	4	6	9	3	8	11	4
ATTTTGAGTCATTGTT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
AATTCACTTGCATCAT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
AATGAGTCATGCGCGA	alt_3933_upstream	17	25	25	17	23	21	27	19	18	10
TTTAGCCAAGTAAATG	alt_3933_upstream	25	41	48	56	46	33	43	45	49	35
GGGTGTCAGAAAGAGC	alt_3933_upstream	3	2	4	7	2	2	1	5	3	6
GACTGGTGGGCATATA	alt_3933_upstream	95	126	127	109	88	117	113	81	128	113
AGCTAATTCTTTAGAG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GTGAGATGACCTACTT	alt_3933_upstream	13	17	15	11	15	8	14	11	20	7
GGGTTCACTTAACTGT	alt_3933_upstream	19	12	7	11	13	7	10	7	19	9
AAAGGTTGTCGGGCGA	alt_3933_upstream	30	21	29	22	24	18	27	18	37	20
CATATACAGGTACGTC	alt_3933_upstream	108	92	101	94	113	72	83	82	124	75
ACCCACGGAATGATTC	alt_3933_upstream	60	82	55	52	67	54	82	51	69	42
AGTACCTCTGAGGTCC	alt_3933_upstream	16	14	8	14	14	7	9	1	13	6
CCAGTGCAGGCGCCCA	alt_3933_upstream	15	13	18	10	11	8	9	6	17	16
CTTTCTGTCGTCCATA	alt_3933_upstream	8	14	13	7	24	8	15	8	17	8
TACGCACACCACCTCT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTACGATAATAC	alt_3933_upstream	53	69	67	48	90	56	104	59	77	69
GTAGTACCGAGATAGT	alt_3933_upstream	99	118	120	104	146	74	138	84	149	93
TATGCCTTCCTCATCA	alt_3933_upstream	28	47	48	30	46	35	30	31	40	27
TTCCATTACTGTAGCG	alt_3933_upstream	4	6	6	10	8	2	3	7	6	2
AGTTTTGGGGGAATTA	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGAGACATTAGCC	alt_3933_upstream	8	16	6	7	15	3	19	4	20	12
CTCTGGTTCGATTGAG	alt_3933_upstream	60	86	67	76	85	53	70	45	97	60
GCCCATGTAGGACACT	alt_3933_upstream	73	94	107	76	92	76	100	73	98	71
GTCCTTTTACGTTAGT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTCGTGATTATAG	alt_3933_upstream	61	71	77	56	91	53	71	70	92	63
GGCATTGCACTCTCGC	alt_3933_upstream	9	10	16	11	11	7	12	4	18	3
GAAATGGCGACCCGGC	alt_3933_upstream	59	47	58	59	44	55	42	50	57	48
GACGCGCACCATGCGT	alt_3933_upstream	34	62	42	56	52	49	62	49	71	42
TGAAGCTAATACGTTA	alt_3933_upstream	6	6	6	4	6	7	3	4	5	6
CCAACACTATATCGTC	alt_3933_upstream	38	38	49	44	37	39	71	41	49	36
AATTAACTAATAGCTC	alt_3933_upstream	132	127	128	127	166	97	123	111	130	122
CCGTGTTATACAAATC	alt_3933_upstream	18	23	26	17	30	14	19	20	35	21
CGTATTGATTGTTTCA	alt_3933_upstream	11	19	13	11	18	12	14	13	15	10
TGTTCAGATGTCATAG	alt_3933_upstream	34	64	43	33	37	27	48	34	44	27
TCATCTCGGCAGCGTG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GTCTAGTTATATCCAC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CTATATCCAGCTCCCT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGTTTTCCAATG	alt_3933_upstream	24	32	36	22	26	20	31	16	24	24
TAGGAATTAGTGTAGC	alt_3933_upstream	14	19	9	15	21	12	21	10	41	13
GATCCGCAACACTGAA	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CATTAAATTATCCGCT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TAACGCCTTTCTGATT	alt_3933_upstream	18	28	14	21	24	7	27	16	32	20
ATTTGTATGCAAGGTG	alt_3933_upstream	4	7	4	6	14	6	10	7	13	3
TCTTCTTAATCTATGT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CAATAAATGTATGACC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TCATGTGGTTGTAGGA	alt_3933_upstream	7	12	12	8	9	10	11	14	13	6
AATCAGTCGCGCTTGT	alt_3933_upstream	21	17	20	18	30	15	20	18	20	13
TGCCACTACATTTCGC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCCCGCTACTTAC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TACCTAACTTTATACA	alt_3933_upstream	19	32	35	18	26	23	35	26	22	17
ATACTTAGCTGCGACG	alt_3933_upstream	39	43	31	46	59	31	42	39	57	30
TTGTGTCAGCACAACG	alt_3933_upstream	26	63	50	47	88	39	80	59	91	39
TTCAGCCCGTTTTGTG	alt_3933_upstream	12	24	18	19	17	29	24	14	22	13
TTTGTCGCATACGTAT	alt_3933_upstream	22	32	29	20	30	13	30	24	29	9
TGGATTGGTCAGCGGG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TAGATTACGTACTCTA	alt_3933_upstream	17	18	29	6	24	12	23	11	28	27
CCGTACTTAGCGCGGT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TGACCGGTTCAGTGCC	alt_3933_upstream	3	42	6	13	62	14	54	13	61	9
ACTACTAGCTACAGCC	alt_3933_upstream	17	30	23	20	32	12	35	20	41	16
CGGTGGTATCCTTTCG	alt_3933_upstream	59	59	42	50	63	47	45	38	51	41
CTAACAGCTTGCGGCC	alt_3933_upstream	13	11	9	13	14	13	24	9	23	10
GTGAGTGTGAAGCGTG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCTTTGTGGCGTG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CGATTTCTGTTTTACA	alt_3933_upstream	7	7	8	6	3	7	3	4	7	5
TACCGTAGTTAGATAG	alt_3933_upstream	14	19	14	22	22	15	20	11	27	18
TAAAAATCAATTGCGC	alt_3933_upstream	87	79	120	104	86	92	94	81	88	103
TATTTGACTCACCCTG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GGATACTCAACTATTC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GTTTACACGGCATATG	alt_3933_upstream	3	3	0	1	3	3	1	2	4	2
CTTAACTCTTGTTCCC	alt_3933_upstream	23	34	30	35	26	20	37	25	40	18
GTTCAATACAGATAAA	alt_3933_upstream	0	2	0	0	0	0	1	0	1	0
TTCTTTAACCGCCCAC	alt_3933_upstream	6	21	10	12	18	17	17	13	22	9
GAGCTGCTGGTGGTTA	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
ACTGACAGGTCTATAA	alt_3933_upstream	15	13	19	17	12	20	20	14	27	13
AGACTATAGCATCGGC	alt_3933_upstream	140	198	182	137	193	166	217	137	217	137
TCACTGGCCTTGCTAT	alt_3933_upstream	26	27	45	39	43	30	37	26	26	28
TCATCTATGCTTTTTG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCTTAGCTTGTTAGAG	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTAAGGAGGTGGT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CGGCAATCTGAAATGA	alt_3933_upstream	25	21	23	17	18	20	23	16	21	7
CGGGCGCCATTGTCTA	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAGTCTTGTTGTT	alt_3933_upstream	90	118	119	89	116	85	120	69	124	84
GTCACTGCGTCCTCTT	alt_3933_upstream	11	9	10	7	7	9	11	6	5	13
CCATCTAGTTAGTGAC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCCAAGTGTCCGGGGT	alt_3933_upstream	12	16	18	15	20	10	24	10	14	13
ACTATGCGGGGTTTTT	alt_3933_upstream	130	157	138	126	135	118	145	129	136	101
GGCAATGCCCTGCCCA	alt_3933_upstream	24	23	24	20	34	25	38	22	28	22
GTTTGACACTAAAGTC	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
GCACAAGGGGAAGTAT	alt_3933_upstream	15	18	22	13	13	15	18	12	12	13
GCCCATGTAGGACTGT	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
CTCCAAGTCGTCTCAC	alt_3933_upstream	36	54	46	38	51	40	57	39	57	34
TCCTAAATTCATATGA	alt_3933_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAAGCCTCTCAAT	alt_3933_upstream	4	5	10	1	10	6	9	3	7	8
CTTTAGGTAGTTAGCC	alt_3933_upstream	16	19	14	10	25	10	25	17	21	17
TTGGTCTAATGCTGTA	alt_1851_reverse	35	27	39	26	41	27	31	23	48	27
GTCCGTATTTGCTTTA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
ATTTCCTGTTTTCCGT	alt_1851_reverse	16	17	9	8	21	13	9	9	13	10
AAGGCCCTCAAGATGT	alt_1851_reverse	283	306	349	300	337	295	343	254	386	275
CAGGATAACATTAGAT	alt_1851_reverse	17	18	16	20	17	14	24	19	25	13
AGGCCTCTCTTTTTGC	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
TTGATGGGTGGCTTTG	alt_1851_reverse	41	48	66	46	53	57	45	65	54	43
TAGCCTCCTCTCTGAT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGATACGAGTTTT	alt_1851_reverse	171	203	206	159	195	145	223	116	199	130
GGCATTATTACGTTTA	alt_1851_reverse	15	17	18	16	22	14	17	21	19	16
GGGGTACTCGCTGAAA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
TTATCCCCCATGGTGC	alt_1851_reverse	8	24	10	9	30	4	27	5	24	6
ACGAAAGTTAGGGTAT	alt_1851_reverse	20	33	36	25	20	22	29	19	31	31
TACAAAATTACTGTTT	alt_1851_reverse	24	32	32	31	35	26	31	21	44	29
TTCTGTAGAATACAAT	alt_1851_reverse	4	7	4	6	5	6	9	10	11	3
TTTCAAGTCCTGAAAC	alt_1851_reverse	8	11	9	7	16	4	8	6	13	7
GCGCTAGCAGTGATTT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CTCATTCCCTCGAATA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCCTCAGAATTCG	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCGCCGGCTCTGG	alt_1851_reverse	7	23	16	14	23	16	22	11	23	11
GTTATTTATGCGCGGC	alt_1851_reverse	63	90	72	55	66	69	79	70	71	41
ATTGTCCTAACACCGG	alt_1851_reverse	64	68	58	65	61	45	65	52	65	57
TCCAGTAAGTACGAGT	alt_1851_reverse	18	35	32	18	17	19	25	15	27	14
GGTTTTTTGTGCTGGT	alt_1851_reverse	22	24	18	20	24	21	18	12	30	5
ATTGTTATAATAACTC	alt_1851_reverse	11	19	13	23	32	19	21	21	22	14
GCAATTTACCACGATT	alt_1851_reverse	6	15	11	3	13	9	11	9	9	9
CCGATCAAGGGCAAAA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
AACTCTGCGGTAGTAA	alt_1851_reverse	24	27	27	28	21	23	25	20	26	24
ACTATATTTTGACTGG	alt_1851_reverse	7	9	6	5	10	8	8	11	13	4
TGTCCTAAGAACACCG	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
TAGCATCGTCTCCTGC	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTGTTTTCCACTT	alt_1851_reverse	12	12	21	11	15	21	14	13	19	16
TAAACTGAGCTAATCG	alt_1851_reverse	73	60	81	65	64	59	67	54	67	46
GAATCTAGTCTTTCGT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTATATTTACCAA	alt_1851_reverse	17	20	30	24	19	26	28	22	25	19
TTCACTATGGAACGAT	alt_1851_reverse	6	7	9	9	9	8	10	9	8	4
CAACTGCGACGGGCCC	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCTCGAGTGTGAA	alt_1851_reverse	22	25	28	12	26	21	27	20	31	13
GCTTAGCCTTTTTTAG	alt_1851_reverse	47	52	53	40	59	50	61	44	64	24
CCAGTCCGGACTGACT	alt_1851_reverse	3	4	10	6	7	1	3	1	4	12
GTGAAATCTCTGGTAC	alt_1851_reverse	38	29	45	21	37	11	37	33	42	17
TCGCTCGCGAGACATT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
ATGCAGTGATATATAT	alt_1851_reverse	80	90	99	62	87	69	77	58	92	61
ACGGTTGTTCCATTTT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
GCATACTTGGGACGAT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGGATATGCACGA	alt_1851_reverse	194	187	231	145	218	177	192	152	249	164
ATACACAGCTCTGATG	alt_1851_reverse	81	102	86	96	109	64	106	62	123	69
GTCCGCAGGCTAATCT	alt_1851_reverse	36	22	37	30	21	28	20	30	19	29
TCTGCAATCATTATTT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCCTTAATGGCTA	alt_1851_reverse	17	14	15	35	15	15	18	14	20	20
TTCAACTGTAGTCAAT	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCTCGAATAACCC	alt_1851_reverse	61	66	88	49	82	47	65	56	71	54
CTTCAGCCCGCCAAAT	alt_1851_reverse	2	4	4	1	2	6	5	6	3	11
CATATTTTTATGGTTG	alt_1851_reverse	7	10	6	3	9	7	10	10	7	7
TCATCTTTTAGTAATA	alt_1851_reverse	63	74	89	78	96	67	73	77	85	71
GCTCAGAGCCCGCCCT	alt_1851_reverse	35	30	38	24	47	25	47	26	45	25
GCATAGTTGTGATTTC	alt_1851_reverse	5	16	9	7	7	10	13	5	12	9
ATACCCGCATCGTCTT	alt_1851_reverse	9	14	16	10	23	6	24	12	28	7
CACACACGACCGTTCT	alt_1851_reverse	18	32	22	21	19	24	29	20	36	15
CTCGCAATACGTTTAT	alt_1851_reverse	35	39	52	31	65	58	51	38	77	38
TATCAATACTTCCCCG	alt_1851_reverse	10	10	5	6	18	8	7	9	13	11
AGCGTACGCAAAACCG	alt_1851_reverse	11	14	13	15	22	9	19	10	12	15
TCGGCGTAATTTCCGT	alt_1851_reverse	1	3	9	5	0	9	3	4	4	8
GGGTAGCCGTGTGCTC	alt_1851_reverse	8	11	25	15	18	15	10	10	21	11
AACGAATTTATATATT	alt_1851_reverse	8	4	9	5	8	3	12	9	6	9
ATTCGTTACTTAGCTA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CAAACTTAGTAATGGG	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
GTTTCGTATGCGAAGA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTCATCCAAAAGC	alt_1851_reverse	63	60	90	74	76	68	80	54	65	54
TACACTTGACCCGCTT	alt_1851_reverse	7	6	4	0	13	10	10	2	9	6
AATAGACCCGGCCTCT	alt_1851_reverse	78	90	93	86	75	72	72	63	70	54
AGGATCGGCTATGGAA	alt_1851_reverse	19	18	14	9	10	10	7	19	16	14
CTCTTTTGACATATGT	alt_1851_reverse	13	27	23	8	11	8	29	15	16	9
TATATGCCCGAATGTC	alt_1851_reverse	15	5	15	12	12	13	20	10	17	17
TATGTTGAGCGATGTG	alt_1851_reverse	21	38	32	27	33	26	46	34	47	32
TCAAGTAACCCTCCCT	alt_1851_reverse	10	53	27	16	53	17	55	25	47	12
ATTTTGAGTTCGGTGA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
TGCCGGGCCAAGGATA	alt_1851_reverse	21	38	27	21	40	29	34	24	31	20
GGTCGGCTGGCTCTAT	alt_1851_reverse	85	98	99	85	97	67	94	83	117	82
GCGCCAGAAGTACGAA	alt_1851_reverse	36	26	38	30	39	25	49	20	37	24
GTTTGTGTACCATTTA	alt_1851_reverse	7	16	19	9	9	12	24	20	27	12
ACGAGCCCCCCAAATT	alt_1851_reverse	0	0	0	0	1	0	0	0	0	0
GTTACTTCCGAGGGAG	alt_1851_reverse	20	20	29	26	30	24	35	16	33	17
AAGTGACTAGCGGTGT	alt_1851_reverse	24	19	13	19	22	26	23	25	26	23
CGTTCTTCGACAATTC	alt_1851_reverse	286	314	284	237	333	215	313	204	314	223
GTTATAGGTCCAGACA	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CATTATTGAATAATTC	alt_1851_reverse	12	19	18	15	5	19	27	16	15	10
CTTGCTAAGTCATAGT	alt_1851_reverse	24	28	27	23	29	23	25	22	36	25
ACGCAGATATTGCTGC	alt_1851_reverse	16	27	28	19	31	20	27	12	25	27
TTTGCAATGTCGGGCG	alt_1851_reverse	0	0	0	0	0	0	0	0	0	0
CTCCTGATGCGCTTAT	alt_1851_reverse	19	27	14	20	20	19	39	10	31	21
TCGCTTAGTTGTCTCA	alt_1851_reverse	38	36	47	39	55	47	49	34	57	45
TTGAATCCCAGTTCGC	alt_1851_reverse	12	15	15	19	17	22	23	23	25	16
TTGGTACTGCCAAGAG	alt_1851_reverse	15	23	21	12	35	22	22	16	15	12
CGTTGCCAATCCTAAG	alt_1851_reverse	7	10	8	12	18	13	15	9	14	5
CTACCCCTGTTGAGGT	alt_1851_reverse	16	27	14	13	26	12	38	12	25	18
GGCGATCAGAGCACCG	alt_1851_reverse	13	17	20	14	18	18	32	22	19	18
AGGCTTGTACACTAAT	alt_1851_reverse	19	31	23	25	34	22	30	23	50	21
CTCCTCCATTTGCTCG	alt_3909_missing	5	11	4	9	15	9	16	6	14	3
CCTCTAATCCACCCCT	alt_3909_missing	1	1	0	0	3	0	2	0	3	0
GGTCGCCCGTCTCTGT	alt_3909_missing	14	20	16	20	25	18	29	17	25	16
CTTTCATATTTAACAA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TAGTTATGTCCTCAGG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TTTCAGTATGCTCGTC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
AGGGTAGTCTGGTCAT	alt_3909_missing	77	131	99	91	146	82	159	65	133	63
CTATCAACATCCCCCG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
CTTGTACGAGATCCGC	alt_3909_missing	11	8	5	7	11	6	10	7	5	4
CACTCGATCGAGACTC	alt_3909_missing	5	34	11	5	32	9	28	13	35	11
AACGACTCTCATGATA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TTGATCAATGCCTGAT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TGGCTGAACGCATCTT	alt_3909_missing	1	4	1	2	3	3	2	0	8	1
ATACTACAGTCATAGG	alt_3909_missing	19	24	22	16	35	19	19	13	29	12
GAGTTAATCGATACCA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TTGGCTGTCGCGCTCA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
CCGTTAAAATTATTCT	alt_3909_missing	6	4	5	2	6	0	4	3	8	4
ATCAGGCGACGTTACC	alt_3909_missing	22	31	23	20	50	17	34	16	34	16
CCTGGTTCCCAGCATC	alt_3909_missing	16	40	19	22	38	20	40	19	36	14
GTCCGGCTGCTCAGCC	alt_3909_missing	4	20	8	8	18	8	21	7	17	9
GATCTCGGCCTTAATA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TGATCACAATCTTTAT	alt_3909_missing	0	0	0	0	0	0	0	1	2	0
GCGGTGGAGAGTTGCT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TAGCGCCTGATCGGTT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
AGGTCTGTGGTCCGTC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TAGGGATCGAACGGTT	alt_3909_missing	29	49	36	40	51	40	54	24	50	34
GGTTAAGCGAGCCGCC	alt_3909_missing	22	19	28	12	22	17	26	13	37	21
GGAAGGAGTTGGCACA	alt_3909_missing	23	31	20	24	37	19	57	18	43	21
CATAGGGGCGACGTGT	alt_3909_missing	29	62	29	29	40	30	54	31	57	35
TTGGCTTTCCTCGTGG	alt_3909_missing	16	17	9	11	21	12	15	18	28	8
ATCTCTGAAAGCCGCT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TGCCCAAGCGATGAGC	alt_3909_missing	30	57	40	29	61	36	57	28	50	22
GTATCTGGATCTATTG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
AAGATTTTTCGGTTCT	alt_3909_missing	6	10	6	3	9	2	10	5	9	4
CGCCAGTGAATCTTTC	alt_3909_missing	7	16	10	11	15	6	18	11	23	12
CACACGAAGCGTGTAC	alt_3909_missing	1	7	6	4	10	3	15	3	5	3
GGTAAACCGCCGCTCC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
GATGTCTCAGCAGCCG	alt_3909_missing	27	46	26	26	45	23	67	30	40	14
TCAAACTCGCTGAAGT	alt_3909_missing	20	40	38	21	47	16	55	39	34	17
CGCATCCGGCGGGTGA	alt_3909_missing	3	2	6	2	2	3	1	0	1	1
CACTACCACAGTCATC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TCATAGCGTGTAGGGA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
GTCGCGGTGGCTTGCC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
ATCTGTCCTACGTTGC	alt_3909_missing	9	11	9	9	10	11	19	8	18	9
AGGATAAATAGCTCGG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
ATGTGTAAGGTTGTGA	alt_3909_missing	28	28	14	31	48	31	43	15	41	16
GGGTTTGTTGCCATTT	alt_3909_missing	8	20	18	17	26	15	22	17	31	11
TCGCTGCATCATCAGT	alt_3909_missing	5	7	11	15	26	13	25	17	32	10
GCCCTGGCTCGAGGTT	alt_3909_missing	13	23	23	13	37	14	16	17	12	11
GGCGAATGAGTCGTCT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
ATCTTTAAAATGTTCC	alt_3909_missing	69	96	82	77	125	66	105	91	119	66
CGTATAGGTAGCGTCC	alt_3909_missing	6	18	7	3	12	8	4	5	7	2
TTCTTGTCGGCCATAG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
CACACCATACACGAAG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
ATTACGTCTCCGCATT	alt_3909_missing	3	5	2	7	4	1	6	3	9	5
ATTAAGGCCATAGCCC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
ATCCTGTCCTGGCTGT	alt_3909_missing	1	0	0	0	1	0	0	0	2	0
CCTAGCAAAGCTAGCC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
CAGAACCCGCCCGGCA	alt_3909_missing	21	39	30	21	43	24	47	25	61	17
CGTGGTTTAGCTGACA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
CCGAGGGGCCATGAAT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
ACATTCGGGCGATGCT	alt_3909_missing	51	96	49	37	79	49	74	49	70	44
ACTCTGGATTTGCCTC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TGAGGAGACGAGCTAT	alt_3909_missing	5	7	11	7	13	11	9	5	16	1
GTATCCTTTCTCTCAA	alt_3909_missing	12	37	17	15	15	23	19	11	15	8
ATTTTCCGGCAGATCA	alt_3909_missing	58	61	44	42	78	52	58	38	91	36
TAACATGTACCGACAA	alt_3909_missing	1	5	6	3	4	1	0	4	1	1
ACCTTTGCAAACAGTA	alt_3909_missing	25	38	23	18	41	20	33	11	32	13
CTCTTTCATTCCTCAA	alt_3909_missing	6	10	7	7	11	3	28	2	16	6
CGGGTCGGGCTTTTTG	alt_3909_missing	16	19	20	17	46	22	52	25	43	11
GCACTCGTATCGTACA	alt_3909_missing	8	7	8	10	15	7	22	8	26	6
GATCGTACTCTCCCTT	alt_3909_missing	3	12	3	0	13	2	9	1	9	1
TATTCAGAACCCGTAA	alt_3909_missing	13	28	31	17	51	15	29	23	25	19
GCAAAGGGTAGCCGCC	alt_3909_missing	74	76	66	67	105	45	98	39	97	51
ATTACCATGTGGCTTC	alt_3909_missing	21	30	30	27	35	15	30	23	45	13
TTTCATAAGGGTGGTC	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TCCTGTTCCCGATCCT	alt_3909_missing	33	62	51	46	80	39	81	45	59	39
TGCATCCTTTGATCCA	alt_3909_missing	8	8	4	3	5	6	13	8	12	14
GCCCCAATATCGTGAT	alt_3909_missing	14	24	20	8	21	14	30	14	22	6
TACAATTGATGGTATT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
GGGACTTAGCTATAAG	alt_3909_missing	20	32	19	11	32	18	38	18	36	34
GCAGGTAATTCTGCAC	alt_3909_missing	15	23	20	21	35	16	31	14	49	14
CCTCAATGTTGCGAGG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
CCTCGTGATCACTGTT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TGTTCCTCTGGGTTTA	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
GGTGCGCGTTGTGTTA	alt_3909_missing	4	26	12	11	15	12	13	3	20	9
ATTAGATCGCTGACAT	alt_3909_missing	6	6	4	4	9	4	8	4	12	9
TTTAGGTACTCGAGAA	alt_3909_missing	0	5	2	1	1	0	0	2	1	3
CATGTGATAAGGTATT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
GTAGGTTTCTAGTGTT	alt_3909_missing	0	1	2	0	1	0	1	1	0	0
ATTCCTCCCCCCGTGT	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TAGTTGTTTTGGAAGG	alt_3909_missing	0	0	0	0	0	0	0	0	0	0
TCAGTCCTTTTTGCTT	alt_5268_fdr	31	35	49	40	31	41	48	30	55	37
TTTTTTTAGATTTATT	alt_5268_fdr	40	44	58	38	57	34	56	43	64	34
CTCTTAATGGTAGCGG	alt_5268_fdr	10	9	11	13	2	6	14	9	12	8
TTCACGAGTTCCTTTT	alt_5268_fdr	50	67	77	77	78	39	87	60	59	56
ACTAAAGTTCGCTATA	alt_5268_fdr	40	37	34	25	31	25	37	21	35	28
TGCTGTAGTCATCACC	alt_5268_fdr	148	211	191	183	248	163	214	172	256	170
TAACTTCTCACCACTT	alt_5268_fdr	67	80	116	95	110	82	103	88	103	89
CTGCAATTCCTGTTTC	alt_5268_fdr	62	82	59	62	74	48	64	61	70	53
CGGGATCTCCTTAAGT	alt_5268_fdr	25	29	33	40	42	37	35	21	39	26
CTGTAATTTAGAGGTG	alt_5268_fdr	38	43	41	57	34	38	59	28	53	25
GCGATATATCGCTTAT	alt_5268_fdr	107	133	140	104	133	104	135	98	133	105
TTTTCGGCGTTGCCTG	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
CAACTCTAGCGGACTT	alt_5268_fdr	6	8	2	4	18	1	8	3	15	1
TACACGTGCCTGAATA	alt_5268_fdr	23	21	27	23	9	12	41	20	23	18
GTGGTCTTGAGGCACT	alt_5268_fdr	60	69	92	55	76	79	92	53	81	55
CAAGAAAATGTTTTGA	alt_5268_fdr	32	43	50	35	49	28	46	31	54	43
CAAATATGCTAATCAG	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
TAATAGATGTTCTTTG	alt_5268_fdr	15	30	24	20	33	25	29	26	31	21
ATTTGACTGTGTCACA	alt_5268_fdr	7	11	9	7	3	5	9	4	14	9
GTACCATGCTATCGTT	alt_5268_fdr	63	102	81	69	83	71	104	67	104	48
CCTCGTATTACAGTCT	alt_5268_fdr	9	16	8	8	19	12	19	8	19	7
AATTTAGCGTCTTTAG	alt_5268_fdr	12	25	15	11	17	18	20	16	19	5
TAAAATTTGCCATTTC	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTCAAGGCTGCAG	alt_5268_fdr	34	70	50	34	68	47	48	41	55	46
TTAGTCTTTCCGCCCG	alt_5268_fdr	5	3	11	4	2	1	9	4	12	3
AGCGGGGCGTCAGCGA	alt_5268_fdr	15	26	12	16	12	17	10	12	17	17
CCTTTTCGTCATTTTT	alt_5268_fdr	76	103	88	76	101	73	92	89	85	60
TCGCCCAACCAGTTTC	alt_5268_fdr	73	72	73	68	118	46	89	55	106	48
AGAGCCCTAGTTTTTG	alt_5268_fdr	31	48	43	33	57	30	57	31	64	22
TATCGAGGCTTTTCTC	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
TAGTATTGCTTAATCG	ref_5268_fdr	64	81	92	71	80	57	61	59	79	61
ACGAGGTGGAGTGTAG	alt_5268_fdr	27	18	29	23	21	16	30	15	40	14
ACTGGCGTTTGTGAGG	alt_5268_fdr	14	19	16	23	28	11	23	14	20	10
AAAGTCACAAGCTTAC	alt_5268_fdr	25	17	18	13	26	18	16	16	33	14
TTCCTGGCTCTCCGCT	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
CAGCGTTGATAGTTGG	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
CTGCATTTAAATTATT	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
GAGGCCTACGACGCTG	alt_5268_fdr	28	34	52	39	47	19	42	44	59	30
TCTGGACCCTAATGAA	alt_5268_fdr	25	49	49	37	47	23	52	33	44	37
TGTTTCAACAGGTCTA	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
TTTCTGCTGAACTTCG	alt_5268_fdr	47	63	68	38	50	50	69	36	74	60
AAGCCTTATATGCTCG	alt_5268_fdr	14	14	9	14	7	11	15	11	21	10
CCGCCGCTTTAATATA	alt_5268_fdr	12	26	22	16	29	12	23	20	18	16
CAGACCTTATTCTTAC	alt_5268_fdr	28	60	49	38	37	27	54	26	60	24
TGGCAGCGTTTGTGTG	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTGCCTTGCGTGC	alt_5268_fdr	38	56	53	41	57	41	38	30	65	42
ATATGTATATGAAATA	alt_5268_fdr	2	3	0	1	0	0	1	2	5	2
TCTCTAATGGAATAGG	alt_5268_fdr	27	41	35	34	39	32	47	32	44	20
ACAATTCTTCAACCCA	ref_5268_fdr	13	20	18	7	16	10	10	19	20	4
CATCATCCGCTATGGA	alt_5268_fdr	70	87	68	65	73	53	86	45	88	49
CTTTGGCTGTATAAAT	alt_5268_fdr	16	12	11	10	14	15	6	11	13	6
TGACTTTGTGCCGGTC	alt_5268_fdr	6	11	18	6	10	9	10	4	9	8
CGGGTCCCTGACAAAT	alt_5268_fdr	18	24	25	28	26	19	31	20	19	17
TGAAGCTACTCGTAGT	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
GGTGCTCGTAAATCAA	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCGAGTCCGGGGT	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
CACGGCATCCGTTCTA	alt_5268_fdr	23	30	21	14	30	17	37	21	26	19
TCTGACGGTATAAAAT	alt_5268_fdr	70	74	95	81	91	70	103	54	88	61
TTCGGAGTTATCTTGG	alt_5268_fdr	19	21	23	13	15	20	26	13	31	29
AGTCGCTATTCTACAT	alt_5268_fdr	2	7	0	1	8	2	2	4	4	1
TGTGTTTCAGTTACAC	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTCGGTGAAGTAT	alt_5268_fdr	7	11	5	6	8	7	6	7	10	6
TACTGTTGCCCCTTGT	alt_5268_fdr	16	33	31	25	25	22	27	21	30	15
GTCGACCGCCGCTTTT	alt_5268_fdr	4	3	4	3	17	2	19	4	16	3
CAATCTTTCCCCCATT	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
TCCCCTGTTCCACATT	alt_5268_fdr	21	42	40	31	34	32	47	31	35	31
GCCTTCCTGATCTCTC	alt_5268_fdr	29	42	37	26	32	25	33	23	44	23
TCTCAGGGATAGCCTA	alt_5268_fdr	14	9	19	18	32	18	24	20	21	18
GCATTAAGATAAGTAT	alt_5268_fdr	27	19	24	23	24	18	22	27	21	16
TGCTGTGTTCAATAAC	alt_5268_fdr	21	32	15	21	34	28	30	21	43	28
TTCCTTCTTCCCGATC	alt_5268_fdr	28	37	25	33	32	26	39	18	44	27
GGAACGTCTTCTTCCT	alt_5268_fdr	9	10	14	19	11	13	14	13	12	11
CTTCTGTGGCGTATCA	alt_5268_fdr	2	0	1	0	0	1	0	0	1	1
GTGTAGTCGTTGAACT	alt_5268_fdr	11	20	8	8	12	14	17	8	11	11
CTTCTTGTGAACATAA	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
CCAACTATGTATTCCC	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
GTCAACGACAACGTAG	alt_5268_fdr	43	65	48	34	61	48	67	33	64	45
GGTACCATATCTCGCC	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
GTTAACTCCGGCTCGA	alt_5268_fdr	6	9	5	3	13	10	6	3	6	6
GCCAACGCTTTTTGCG	alt_5268_fdr	0	0	0	0	0	0	0	0	0	0
GATGGACGCGGATTAC	alt_5268_fdr	4	5	10	5	2	7	6	5	2	6
AGGCTGTGTATTGATC	ref_5834_new	131	114	162	91	92	97	111	87	107	106
ATATGTTCCACGGTTA	ref_5834_new	16	16	18	23	17	15	13	22	16	9
CTTTTCGCGCTCGTAC	alt_5834_new	7	13	15	11	8	7	14	7	5	7
TAAACGGTGGCGTCGC	ref_5834_new	32	19	32	20	20	21	13	33	22	30
GAGTTTTACTCGAATG	ref_5834_new	6	1	7	7	12	11	6	2	5	9
CGGCCATTCTGCGTGT	ref_5834_new	0	0	0	0	0	0	0	0	0	0
TTCATCGTTTACGTCC	ref_5834_new	0	0	0	0	0	0	0	0	0	0
TTTATCTGTCTAAAGA	ref_5834_new	29	32	53	29	35	33	23	29	37	30
TAAGACTTGTGCAGAC	ref_5834_new	94	90	111	108	101	98	116	104	102	82
TAAGTCCTGCTACGTA	ref_5788_new	84	78	113	94	77	77	72	79	93	86
TTGAGTAGGGAGCGCC	ref_5788_new	104	98	130	107	98	122	94	98	95	89
TCCTTAGTATGTCGCA	ref_5788_new	43	26	52	55	33	41	37	49	38	39
TCTCGGGATTGATACC	ref_5788_new	38	42	46	59	24	37	44	47	44	47
GCGTTGCTAGGCGCTA	alt_5788_new	439	387	560	503	389	455	433	392	468	424
TTCCGCCAGACTTGGA	ref_5788_new	112	94	114	105	96	101	80	110	100	99
GCGAACTTTTTTCCTG	ref_5788_new	113	71	108	99	63	95	91	69	63	90
TTGTGATGCATGACTC	ref_5788_new	57	43	75	88	52	85	56	75	61	61
TGCCACTTGGGTTCTC	ref_5788_new	27	23	40	31	33	31	34	21	32	29
CGATAACCTGTTGCCC	ref_5788_new	0	0	0	0	0	0	0	0	0	0
ATTATTTGCTCGGAAC	ref_5788_new	42	34	63	43	35	41	31	37	30	30
GAGATGGGATCATATA	ref_5788_new	31	18	28	11	16	18	18	21	28	14
TCGCATTGTGGGCATG	ref_5788_new	17	11	38	35	22	19	20	18	28	21
TTGCATGAAGGCAGCA	ref_5788_new	101	83	119	105	81	101	80	105	75	71
CCTTTTATTAGAATTG	ref_5788_new	48	96	65	49	68	40	93	37	94	57
TTTTTCGCCCAAGCGT	ref_5788_new	0	0	0	0	0	0	0	0	0	0
GCTTATGGCGTACAGG	ref_5788_new	59	52	87	70	49	51	40	65	50	40
GTCGCACCGGCATTCT	alt_5788_new	46	41	48	44	55	39	59	49	46	33
CACTTTACAATATTGC	ref_5788_new	53	46	59	54	35	52	44	43	31	44
ATTGGCCGGGACCACT	ref_5788_new	0	0	0	0	0	0	0	0	0	0
CATGGGGGGAATTTCT	ref_5788_new	0	0	0	0	0	0	0	0	0	0
ATTGTTCGGCGCTCTC	ref_5788_new	37	17	29	30	23	20	21	36	43	39
TCATGTGTATCATATA	ref_5788_new	189	161	230	183	157	166	191	166	204	163
AAAATGACCGTTATAA	ref_5788_new	15	11	13	10	3	14	11	15	8	11
CTCGAAATTCTTATGG	ref_5788_new	67	47	104	64	48	82	67	54	46	75
ACGACGAGTACGCACT	ref_5788_new	42	50	91	48	38	59	44	65	35	57
CTGGTGCCTTTTGTCC	ref_5788_new	12	20	15	15	41	17	30	8	27	18
CTACCGTTGCATCGTC	ref_5788_new	0	0	0	0	0	0	0	0	0	0
ATCGGGTTCATCTGCC	alt_5788_new	197	148	242	205	167	178	151	230	152	176
GTAGGTGTAACCGGCT	ref_5788_new	0	0	0	0	0	0	0	0	0	0
GCGTAAACATTCTTGT	ref_5788_new	27	16	27	40	25	25	27	23	40	34
TACTATTTATCGCTCG	ref_5788_new	36	10	44	24	14	26	21	18	31	22
GGGCCGCGTACGGACA	ref_5788_new	121	56	123	119	73	90	86	109	76	91
TGACTTTCGTCCACCT	ref_5788_new	59	35	62	71	39	48	35	43	42	51
CTTGTGTATTTTCTAG	ref_5788_new	0	0	0	0	0	0	0	0	0	0
GTCTACCTTTCCCGGT	ref_5788_new	93	66	77	85	68	70	53	59	79	80
ATGATACTTGCATGTT	ref_5788_new	18	7	9	12	8	11	13	9	10	14
GGTTTTGTATATAACG	ref_5788_new	0	0	0	0	0	0	0	0	0	0
TTTGCAATCGTACCCT	ref_5788_new	5	6	11	6	13	12	7	4	10	10
TGCAAAATACTTGAGT	ref_5788_new	0	0	0	0	0	0	0	0	0	0
TGTCACGTGATCTAGT	ref_5788_new	9	5	15	10	7	13	8	13	12	6
ATTCTCCCGTATACTG	ref_5788_new	92	93	109	112	71	94	91	95	107	87
CTTCAGGGTACGTACA	ref_5788_new	41	31	48	33	34	45	36	50	39	35
GGCGTTTCTGATTGGT	ref_5788_new	55	57	69	55	52	59	66	47	76	50
TACCTTGGCAGTTCTG	ref_5788_new	0	0	0	0	0	0	0	0	0	0
GGCACACTTGGGCCCT	ref_5788_new	0	0	0	0	0	0	0	0	0	0
CTTTGCATACATGGGC	ref_5788_new	103	67	99	96	82	93	79	84	78	77
CGCAAATGACGGTACG	ref_5788_new	25	16	19	25	12	28	19	21	22	27
GGTACTTTTGATTGAA	ref_5788_new	73	85	87	61	55	80	50	71	69	69
TAAGTGTCCTTACATA	ref_5788_new	54	62	39	45	65	45	71	36	72	36
CCCGCCCAAATGACGG	ref_5788_new	0	0	0	0	0	0	0	0	0	0
TGGTGTGGCTGGAAGC	alt_5788_new	111	149	149	123	123	125	158	104	155	85
TGTCCTTTTTTCATTA	ref_5788_new	35	33	48	37	41	36	23	34	30	33
CGCCGGCCTTGTGTTT	alt_5788_new	133	187	185	172	169	124	160	123	161	116
TTAGTCTGGGCTCACC	ref_5788_new	91	86	109	89	94	79	96	85	110	77
CATAAAGAAAACGCTT	ref_5788_new	693	500	901	777	559	737	580	703	595	671
TCTCTTGGGGATAACT	ref_5788_new	47	56	83	59	50	63	36	65	42	59
TACTCTGTAGAGGACC	ref_5788_new	0	0	0	0	0	0	0	0	0	0
ACAGTACAATAAGAGT	ref_5788_new	0	0	0	0	0	0	0	0	0	0
GCCTAGGTTCGAGAAA	ref_5788_new	22	16	25	17	15	17	14	30	14	16
CATAGTGCGAAAGGGT	ref_5788_new	20	16	30	19	16	10	12	11	23	14
GATGGCAGTCTTGAAC	ref_5788_new	0	0	0	0	0	0	0	0	0	0
AAGACCGCTACTGTGT	ref_5788_new	53	41	45	55	31	42	61	31	52	42
TATTCGTCGATTAAGC	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
AATTACCAAAACTCTA	ref_939_fdr	126	47	135	119	46	136	61	113	76	90
TCATTTGATGTTTGTT	ref_939_fdr	53	20	53	45	12	53	28	52	17	49
GCTTCCTGCCTTCGTT	ref_939_fdr	33	18	55	34	20	41	14	37	18	35
CAGTTTGGGCAAGTCC	ref_939_fdr	11	8	15	31	7	15	18	14	17	20
ATTGAATTGAGTTTAA	ref_939_fdr	141	103	186	175	80	150	93	172	83	171
AGTCCGGTAAGTATTC	ref_939_fdr	80	54	103	88	56	96	66	81	51	85
GTGTTCCTTAGTGACA	ref_939_fdr	32	17	36	24	20	26	22	32	13	30
GGGTTGTGTCTAGTGA	ref_939_fdr	272	146	302	263	152	244	177	255	159	213
TGTATGAAGGAATCTT	ref_939_fdr	24	17	34	32	11	24	24	33	8	27
CTCTTGGCCGGAGAGG	ref_939_fdr	19	17	27	16	9	25	19	14	9	22
ATTTAACCGAAGCCTA	ref_939_fdr	122	65	142	140	70	92	49	119	71	92
CTACAGAGGCTAAGCA	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGCTTGGCGATT	ref_939_fdr	35	35	45	40	18	23	17	46	26	24
GTGCTGCTATTGATCG	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
GGTAGATCCCGGCAAA	ref_939_fdr	31	25	37	46	18	42	23	27	17	25
TTCAGAACCGGTATAA	ref_939_fdr	27	8	27	19	10	15	14	19	10	13
CATCTAACGTCATATA	ref_939_fdr	10	3	11	13	2	6	8	13	15	9
GATGACCTGTACGGTC	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCTCCAAATCTAA	ref_939_fdr	5	6	7	3	4	5	0	6	8	4
TTCCTTTCCAGGCTAA	ref_939_fdr	40	25	67	32	14	34	30	26	39	18
GGTACTGCCAGGGGTC	ref_939_fdr	50	22	36	31	18	21	15	25	22	24
AAGGGTAACTGCTACG	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTACGTTTGTTTT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTCTGTACCGAGA	ref_939_fdr	22	13	39	35	17	23	13	27	20	28
GTCTAGGACATACTCT	ref_939_fdr	90	35	96	70	38	95	42	91	60	79
CGTTATCTTGTTTATA	ref_939_fdr	94	36	126	82	34	72	69	79	34	83
TGGTCATGTGCGGCAC	ref_939_fdr	77	50	87	59	42	64	39	66	44	72
TTTGAATTTAGGCATA	ref_939_fdr	128	78	180	130	65	127	71	165	75	128
TGCGTTCTTTAGTCTT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TACCGCACTCCATAGG	ref_939_fdr	2	0	2	1	4	0	2	0	3	1
TTTACAAACCTGCACT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
CAGGGACACTGCCCCG	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
AGTAATCACGTTCAGA	ref_939_fdr	45	22	38	53	24	46	22	40	34	41
AGTTTACCGCTCGCGG	ref_939_fdr	112	86	125	82	76	102	66	95	69	119
GCTTATTCCGTCCCTC	ref_939_fdr	44	49	64	57	50	58	38	55	46	60
CTTTTAAGAAACCGAC	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAGTGGTTCATGG	ref_939_fdr	96	38	103	55	38	91	55	75	43	64
TGGCCTAGGAACGGGA	ref_939_fdr	1	4	7	4	4	6	0	7	3	2
CGTAACCGCTAATATC	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TCTCATTATCACCCAG	ref_939_fdr	65	46	95	74	46	88	43	77	34	57
CGCTCCGGGTAGTCGA	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTGCTCTACGCCT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
AAGACTATGGAATTGA	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TAATGATCTCAGTTAG	ref_939_fdr	32	18	44	29	20	30	17	38	26	23
CCTCATTAATCGCAAG	ref_939_fdr	10	9	11	14	8	11	13	8	14	8
ATGACTTACCACTGGT	ref_939_fdr	26	41	44	30	51	26	58	29	56	24
ACTCCTGGTCCATACC	ref_939_fdr	44	38	37	41	42	31	36	45	41	50
AATAATTTCCTTAGCT	ref_939_fdr	62	40	78	87	45	79	49	77	43	63
TGGGGTTTCGTTTATG	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
CCGTCGTAAGTTAGTC	ref_939_fdr	78	35	82	73	36	51	36	64	47	83
GTCCTTTCGGTATTCG	ref_939_fdr	1	4	5	2	2	1	1	2	1	2
CATGCTACAGGGCGCT	ref_939_fdr	16	10	24	13	11	11	11	17	14	12
AGTTCCGTGTTCTATT	ref_939_fdr	19	11	26	14	12	20	16	12	12	20
TTGTATATTAGTCCAA	ref_939_fdr	125	109	137	132	99	139	98	133	91	112
GACTTGTAATTTTAGC	ref_939_fdr	8	5	7	11	1	4	12	3	3	2
CGTAGTGTTTCTTTTC	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TATCCGCACCAATTGT	ref_939_fdr	5	6	10	11	1	4	6	2	0	4
CCCATTGATATGGGAT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTTCGAGCCTGTA	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
CTACATTTCGCGCTAA	ref_939_fdr	65	36	80	68	31	63	43	63	47	46
TCGCCAAATGGGCTTA	ref_939_fdr	81	65	114	89	53	83	71	98	67	71
CTGTACCGGACCAGTC	ref_939_fdr	148	88	134	126	78	127	75	114	76	103
TACGTTGTAAGTTGCG	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGGTCAAGTACTT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGCGCTCCGAAT	ref_939_fdr	45	56	50	72	40	50	52	53	48	49
TCGCTCCAGTAAGCAA	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGTCTTAGGCAT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCTTTGGGTCTAT	ref_939_fdr	54	20	52	55	25	54	34	50	33	40
ATAGAGGATACTTTTT	ref_939_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGTTAAGCGTTCA	ref_939_fdr	61	30	63	61	41	58	36	49	30	49
TTTTTGGTGGATCTAC	ref_939_fdr	118	68	159	127	71	116	68	105	73	97
TTTCCATGCTCTTCTG	ref_939_fdr	121	47	135	105	52	107	53	121	55	96
GTACCGTCTGCTGTTA	ref_939_fdr	11	38	30	28	38	18	46	21	41	16
CCGAAGTTGAGAGGAC	ref_939_fdr	26	16	41	28	17	32	21	30	12	19
CATCTGTCAGCGACAT	ref_939_fdr	59	42	90	68	37	68	28	55	40	65
TATGCAGTATAGCATA	ref_939_fdr	28	18	24	33	18	28	16	18	15	19
AATTAAGGGAGATACG	ref_939_fdr	140	66	151	145	75	107	60	137	65	108
TAGTCGGCATTTTTAA	ref_939_fdr	7	2	2	4	1	3	3	1	0	3
CGCTTCTTTATTAGGC	alt_5995_new	15	33	17	14	27	17	42	28	35	15
CCCGTGATCTTCGCGT	alt_5995_new	8	38	13	7	34	2	33	13	31	5
TGCATATCTGGTTTCT	alt_5995_new	52	112	57	68	130	47	109	38	135	40
GGTGTACCTTCTTTGT	alt_5995_new	13	35	12	11	15	10	19	7	31	10
GGTCTGCCTTTTACGT	alt_5995_new	5	9	1	2	3	3	8	2	6	1
ATTCCGTATGTCATTG	alt_5995_new	0	0	0	0	0	0	0	0	0	0
TTGAGGGCATATTGTC	alt_5995_new	24	69	40	24	71	33	85	29	96	31
TACGTCTCCACCCGCC	alt_5995_new	10	19	8	6	15	8	13	8	24	5
TACTTTTTCGACACAG	alt_5995_new	66	159	74	58	198	51	188	55	187	47
TCTGCTGATTTGTATG	alt_5995_new	9	32	8	12	22	11	27	7	29	6
GGCGTACCTTTAAGAA	alt_5995_new	0	0	0	0	0	0	0	0	0	0
CGTGTCCCAAGGCCCC	alt_5995_new	0	0	0	0	0	0	0	0	0	0
ATTGTTTTTCACGTCG	alt_5995_new	0	0	0	0	0	0	0	0	0	0
CTGGGAGTTTGTATTT	alt_5995_new	11	29	19	19	35	20	26	23	34	20
TACGTATCACGGCAAA	alt_5995_new	8	24	15	9	28	10	21	8	20	10
AATTATGGCTTTCAGA	alt_5995_new	5	19	10	7	15	8	12	2	19	7
GCAACCGTCTGTGTGT	alt_5995_new	29	91	31	30	106	25	100	34	76	31
GTCCCGTAGAACTAAT	alt_5995_new	9	26	21	19	29	10	28	11	41	6
ATCCGCCGAATATCTC	alt_5995_new	3	11	5	2	0	0	4	6	5	2
CCATTTTTGGTAGCTC	alt_5995_new	0	0	0	0	0	0	0	0	0	0
CATAGCCGCACGTGAA	alt_5995_new	21	43	8	17	48	8	43	15	43	9
TGCACAAGTGGGCTTA	alt_5995_new	0	0	0	0	0	0	0	0	0	0
TAGTTAAGCGATTCCC	alt_5995_new	16	21	15	15	24	13	27	14	26	11
TTTGGTTGTTTTACGT	alt_5995_new	0	0	0	0	0	0	0	0	0	0
GGGGTGCGTATCTTTG	alt_5995_new	18	62	22	23	42	26	42	27	42	13
GTAGCCATTAATTTTC	alt_5995_new	10	29	14	8	21	14	24	13	21	20
AAAACTTATGCGGTCG	alt_5995_new	2	1	2	0	3	1	3	1	5	1
TTGTTTAGTAATTCTT	alt_5995_new	0	0	0	0	0	0	0	0	0	0
ATCAAGGACCTTCCTA	alt_5995_new	0	0	0	0	0	0	0	0	0	0
TCTGCGGTTCATGCTT	alt_5995_new	11	36	11	10	47	14	43	9	32	14
GGGCGTTTACCGGGAA	alt_5995_new	0	0	0	0	0	0	0	0	0	0
ACGGAGCTTGAAGTAA	alt_5995_new	0	0	0	0	0	0	0	0	0	0
TCCATCTATAGTCATT	alt_5995_new	13	39	13	22	36	14	37	18	51	24
ATGATTGTCGGGTTAT	alt_5995_new	1	5	2	1	5	3	17	0	6	5
CTGTGTGCCAAATATG	alt_5995_new	15	27	8	12	26	7	27	8	37	5
CTTCAGATCTCTTTCC	alt_5995_new	27	50	33	31	47	36	54	20	51	24
GTTCGTTTAAGCTAAG	alt_5995_new	23	38	20	15	36	17	54	17	61	10
GAATCCGGTAGATTAC	alt_5995_new	42	77	36	38	89	33	83	31	73	21
ACTACTTATGTGTCCT	alt_5995_new	15	30	11	11	24	10	21	10	24	8
GTACATGATGCACATG	alt_5995_new	0	0	0	0	0	0	0	0	0	0
CCCGCCAAAGCCTATG	alt_5995_new	0	0	0	0	0	0	0	0	0	0
CATATAGTAGGTAAAA	alt_5995_new	7	15	6	5	16	4	19	3	12	4
GAGAACTGGCCTAACC	alt_5995_new	0	0	0	0	0	0	0	0	0	0
AGACTTGTGCCACTTA	alt_5995_new	7	22	6	4	24	11	22	9	21	11
TTCTTTCTGGAGTGAG	alt_5995_new	22	45	17	12	52	13	41	19	46	16
CTGCATCTGGGAAGGT	alt_5995_new	0	0	0	0	0	0	0	0	0	0
CCCCAAATATGGGGTT	alt_5995_new	19	48	22	38	38	23	57	15	38	18
GAGCCGGCTAGTCTCC	alt_5995_new	7	6	5	0	12	6	13	6	10	4
AGGACTCTCTGCAAGA	alt_5995_new	0	0	0	0	0	0	0	0	0	0
GTTATACGTGATGGAG	alt_5995_new	0	0	0	0	0	0	0	0	0	0
AAATGCGTAAGGTTCG	alt_5995_new	21	34	23	25	22	17	37	16	34	12
TGTCACGTGTTCCCAG	alt_5995_new	0	0	0	0	0	0	0	0	0	0
GCGTTCTTCGTTGTGA	alt_5995_new	9	13	8	3	21	3	17	10	24	4
AACAAATCGAAGTGAT	alt_5995_new	0	0	0	0	0	0	0	0	0	0
ACGAGGATTAACAATT	alt_5995_new	16	41	21	20	31	18	31	14	41	11
TCAATGCCTTCGGTTA	alt_5995_new	7	11	4	12	18	2	11	7	8	4
AAAGAATCTGGAGAGG	alt_5995_new	37	95	44	38	87	36	92	39	100	39
TTGGACCCGTCTCCTT	alt_5995_new	25	18	19	14	10	21	18	23	21	17
ATTTTCCGAGCTCAGT	alt_5995_new	0	0	0	0	0	0	0	0	0	0
TCAAAAAATAGGGCTC	alt_5995_new	0	0	0	0	0	0	0	0	0	0
GGAGGCATGTTCTCCG	alt_5995_new	0	0	0	0	0	0	0	0	0	0
CGTTTCATTCAACAAT	alt_5995_new	0	0	0	0	0	0	0	0	0	0
TAACAATGCTGACTAT	alt_5995_new	0	0	0	0	0	0	0	0	0	0
TTCATAGCTGACCTCG	alt_5995_new	13	28	7	13	35	10	22	10	23	6
AACTAAGCGGTAGTGG	alt_5995_new	19	65	22	27	81	20	65	34	63	25
GGAATAGTTTCAGGTA	alt_5995_new	1	4	0	1	2	1	2	0	0	0
TGATCCCTACTTCCTC	alt_5995_new	10	16	10	10	19	5	20	11	20	11
GTATTCTGAGACCGCT	alt_5995_new	22	70	30	27	60	26	68	20	76	21
TCTGCCAGTTAGGCAA	alt_5995_new	3	13	3	9	18	6	15	7	29	2
AAATATTCTTGGTCTC	alt_5995_new	20	25	17	18	25	11	32	20	28	18
TTTCAGATTTTTAAGT	ref_6120_new	6	5	8	4	4	4	7	2	2	7
CGTCAATGGGGAACAT	ref_6120_new	0	0	4	4	4	5	0	0	4	6
CGATATTGCCCTCCTT	ref_6120_new	132	93	206	148	99	156	84	139	106	130
TTTGTTTTGGGAGAGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TATACATAAGCTCGCA	ref_6120_new	1	18	8	0	6	1	9	7	12	6
TCCGGCCGCCTTGCCT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
CTCAACTTGATGCGAC	ref_6120_new	93	64	90	79	90	100	73	87	93	63
AGCTCCCATGGCGCCA	ref_6120_new	21	20	39	33	21	20	13	23	17	28
TTAATTCTTTCGCAAG	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TAAATATACATACAGC	ref_6120_new	131	118	135	132	74	113	105	109	104	97
CGTGTAGCCTATCAGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
ATAGGTCCCGTAGTGC	ref_6120_new	48	31	44	43	26	37	30	44	33	36
TTTAACGTGAGTTCTA	ref_6120_new	92	80	126	104	69	118	79	89	86	94
AGCAACTACAAGCAAT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TGCTCTTTGGGCTTGT	ref_6120_new	65	41	80	61	34	47	48	61	47	48
TTACAGCTAGTCAAAC	ref_6120_new	22	20	19	17	22	18	20	22	19	18
CTTTCCGGGTCCTACG	ref_6120_new	69	47	68	66	42	61	55	62	56	45
GGGGAAACGCTAACCA	ref_6120_new	83	42	93	76	51	92	56	91	54	74
TGGTGTACGGCGATCT	ref_6120_new	15	12	18	12	14	16	18	18	18	13
CGATGTCCTGTCGTTT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TTCTGGGTTTGTATGG	ref_6120_new	56	42	90	82	51	73	50	69	53	61
CTTACCTGTTAAATGT	ref_6120_new	24	32	23	21	44	21	51	16	43	12
GCTGGTTTCGAAATCC	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TGGTCATCATTAGGGG	ref_6120_new	128	60	122	108	67	103	62	122	82	118
GGACCCAAGTTGTAGA	ref_6120_new	28	32	26	39	27	20	29	21	26	33
GTTCGATGCTTAAGAG	ref_6120_new	30	32	29	27	15	18	16	13	18	18
GTGATGCATTAACCCG	ref_6120_new	16	16	13	16	11	10	11	13	9	19
CCTCCCTCGGAGGAGA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TACTGCCGTCCCCGGT	ref_6120_new	143	153	228	222	152	168	152	217	159	172
TTCAGGAGGCGACATA	ref_6120_new	2	2	14	9	2	8	1	2	1	6
TTTTCTGTAGGTATCG	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TAATTTTGCAGTAAAG	ref_6120_new	75	45	91	65	56	73	78	66	51	54
AGTAGTGCTATGAGTA	ref_6120_new	10	6	15	14	10	16	12	8	11	7
TGATTCTAAGCGTTAT	ref_6120_new	12	10	8	9	3	10	6	4	5	13
CGGCTAGCCGGTAAGC	ref_6120_new	100	96	113	128	76	104	98	101	97	87
TTGAATATAGCCGTTT	ref_6120_new	132	100	142	120	93	112	111	95	107	109
TCTAGACTTCCACAGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
AGGGATGTATTTGCTA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
CCCGCCATATGTCGTA	ref_6120_new	17	22	25	15	19	10	32	23	23	29
TCTCGAGTTTCTACTC	ref_6120_new	0	0	0	0	0	0	0	0	0	0
CTCCTGACGTGTGTTC	ref_6120_new	31	29	29	25	25	19	35	29	26	26
GATATATGTTTGTTTT	ref_6120_new	46	24	50	55	21	34	23	32	34	40
ACAGCCAAAGATAGGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TGGTGGGTAGTTTCCC	ref_6120_new	20	11	25	26	11	31	17	16	17	15
CGATCACTTTGAAAGA	ref_6120_new	42	23	51	49	23	37	45	53	28	44
GTTGGCTCAACTTTTG	ref_6120_new	40	32	49	45	31	41	34	32	41	36
TTTATATCGAGTCTGT	ref_6120_new	13	5	5	7	2	8	8	3	9	5
CGTGGATCCAATTCCC	ref_6120_new	31	15	30	22	16	25	19	15	15	27
CTTTTTCGCCGCTGGA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TGCTCCATTCAGATAT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
ATTGCACTGACCCTTT	ref_6120_new	15	18	31	25	23	12	19	16	23	13
ACCCCTTCGTGCGATA	ref_6120_new	23	13	31	38	12	18	15	32	15	31
CTTTCCCATAGCCTAA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TTGACACGTGGCTGCC	ref_6120_new	49	30	67	55	47	42	39	37	45	40
GGGCAGTCACTAGGTA	ref_6120_new	106	62	133	103	75	114	88	91	77	93
TAAGAATTCGGTTCCT	ref_6120_new	45	20	46	23	32	40	23	42	39	38
GAGATGTATTTCAGGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
GGTCACCTTCATACTC	ref_6120_new	14	9	5	10	8	9	6	9	5	11
TGCGATCAGTTCGCCG	ref_6120_new	32	42	47	43	30	32	32	38	33	39
GGAGGGGTTATGGTCA	ref_6120_new	250	151	332	273	191	268	167	279	194	252
GGTTATTGCGAGCCAT	ref_6120_new	209	144	247	212	162	196	149	212	145	185
GACCGTTTTTGCCTGC	ref_6120_new	12	5	11	13	9	13	7	14	7	7
GGATCTGTTCAACCCT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TGTCAGGAAGTCGCTA	ref_6120_new	15	23	19	27	11	14	12	18	18	19
GTAGTCGTTTGTAGTA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
GCCTGGCCGCCGGGCT	ref_6120_new	21	18	28	14	12	23	17	19	12	22
AGGGTAGGTGTCCCCT	ref_6120_new	12	23	22	25	23	12	12	16	18	15
ATCATCCGCTTCTGAA	ref_6120_new	72	41	85	52	59	66	46	50	57	62
TGAATATACGTAGTAA	ref_6120_new	184	105	271	217	136	175	135	191	151	173
AATGGGCTGAGGGTTC	ref_6120_new	20	16	32	24	19	20	15	32	19	14
AGAGCGCATACGCGCC	ref_6120_new	21	25	21	19	18	40	13	19	14	25
GCCCCATTAAGTTGCT	ref_6120_new	12	5	12	20	4	10	6	11	5	10
GTAGCAGGGTGTCTCT	ref_6120_new	43	30	51	48	32	42	34	46	31	33
TCCAATACTGTGAAGC	ref_6120_new	150	83	168	152	93	120	139	99	99	126
TAGGTTCCATAGCCCT	ref_6120_new	11	17	19	11	13	12	6	6	11	9
ATATAAATTTTATAAG	ref_6120_new	48	42	58	59	46	43	48	46	40	29
AATGGGTTGGTCAATC	ref_6120_new	44	47	63	60	47	49	45	56	43	42
CCTTAGACGTCTCATA	ref_6120_new	131	156	214	178	193	128	162	160	147	130
CCGTGGTATTTAGTCC	ref_6120_new	6	15	5	5	15	9	10	2	10	7
TCAGTCGCTGGGTTTA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
GGATCGATTTTTCTCC	ref_6120_new	7	14	11	14	14	15	7	13	12	10
TTCACATCGCACTAAC	ref_6120_new	7	8	14	8	9	15	9	12	12	8
AGCGATCTCCACTTTT	ref_6120_new	29	22	31	25	16	30	7	11	24	24
TTCTATGGCTTCAAGC	ref_6120_new	52	60	78	53	52	68	55	76	54	51
TATATGTGAGTTCTGC	ref_6120_new	6	3	4	1	3	3	5	1	5	9
TACAGGATTCTATCCC	ref_6120_new	14	22	29	13	13	34	20	11	18	5
TGGTATGTCTTTTAGC	ref_6120_new	5	3	7	3	5	1	8	6	8	5
AAGATCAGTAGGCGCG	ref_6120_new	19	21	40	28	21	19	15	20	25	13
CTCGTAACATGTGGAG	ref_6120_new	6	2	6	4	7	0	5	4	7	0
GTGGAGCCATGATCTA	ref_6120_new	117	80	134	111	92	101	85	102	90	88
TCAGTGGACTGCCTAG	ref_6120_new	19	32	18	21	21	24	17	39	34	14
TCTAAGGTGTGTCGGG	ref_6120_new	32	27	43	25	23	37	31	34	28	17
GGATCCATGAAAATCA	ref_6120_new	90	49	90	79	58	69	43	61	58	73
AGCCTTTATTGCGCGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
GAGATGCGACGGACAT	ref_6120_new	3	2	6	13	11	7	7	10	7	10
AAGCACTCATAGTTAG	ref_6120_new	62	43	77	85	53	63	69	58	48	56
AGTAGCGCTCTGGTAT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TGTGGGTCTTAGCGGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TTCTGGTAGCCATGCA	ref_6120_new	67	77	92	77	50	63	82	83	90	85
CTTGGTGCAGTAATTA	ref_6120_new	19	12	25	13	15	13	14	22	20	16
TTCTAGTATCCAAGGT	ref_6120_new	98	88	106	102	84	109	100	119	74	68
AGGGTCGGCGCCACCG	ref_6120_new	21	12	26	28	15	26	12	22	9	14
AGTATCGTGTTTAATG	ref_6120_new	40	40	70	65	43	45	39	48	35	48
CTCGCTATAAACACGC	ref_6120_new	17	38	22	18	55	17	37	25	34	17
CTTAACTCTCCTTTGA	ref_6120_new	18	14	19	25	8	14	11	19	15	15
CGCCGTAACTGGTCCA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
TGGCGGGGACCGTTTT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
CGTGGGCAAGCATTGG	ref_6120_new	13	10	9	8	8	11	7	10	18	6
TTGAATTACTGAAACC	ref_6120_new	7	12	15	7	9	5	11	5	22	7
AACTATACCACAGGCG	ref_6120_new	0	0	0	0	0	0	0	0	0	0
GCGTATATTCTAGAGC	ref_6120_new	0	0	0	0	0	0	0	0	0	0
CATTAATATTAGGTGT	ref_6120_new	206	127	252	226	130	184	127	175	131	165
CCAGCTCGTGATCTCT	ref_6120_new	3	1	7	6	10	7	14	12	7	5
ACCATGACTCCCAAGT	ref_6120_new	0	0	0	0	0	0	0	0	0	0
CATACTCTTTGTCTTG	ref_6120_new	325	192	356	299	231	312	232	337	222	269
ATCGTATGGCCATCAT	ref_6120_new	22	16	27	19	16	26	15	18	24	18
TTGCGATTTCTGAAGG	ref_6120_new	22	30	36	39	16	32	20	30	32	23
TTGGTGCTGCCGGTGC	ref_6120_new	87	52	106	95	46	88	50	89	51	78
AGAGTCGGGAACATAA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
CACTTGACCGCCCACT	ref_6120_new	19	14	35	16	14	14	15	23	17	20
TGAGGCACAGCCAACC	ref_6120_new	62	55	78	68	47	74	59	66	49	56
TTTTTCTCAGGCTAGG	ref_6120_new	247	189	329	247	211	228	173	243	188	250
TAGTTACCAGGTGTTA	ref_6120_new	34	30	48	44	29	29	39	48	34	31
GAATATAGTTGGTACT	ref_6120_new	16	18	20	15	15	13	9	14	14	19
GATCTCCGCTTCTCGA	ref_6120_new	35	15	31	26	15	26	10	26	14	18
AGGTAATAAGTTGAGG	ref_6120_new	6	8	9	7	2	9	8	10	2	4
TTGTTACATTTGTGTA	ref_6120_new	136	96	134	141	67	121	92	105	122	95
TACTTGGTAAGCGCCG	ref_6120_new	0	0	0	0	0	0	0	0	0	0
ATTTCCATGGAGTATA	ref_6120_new	0	0	0	0	0	0	0	0	0	0
AGCCCGAAGTTCGAGC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
GAGACAGATGAGACAC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
GGGTAATCGGGCAATC	alt_4684_upstream	43	33	47	37	47	34	36	40	44	37
CTTACCTCTTATCCAT	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TATTTCGTTGGGTGTG	alt_4684_upstream	52	41	65	45	45	40	60	30	54	41
ACCCTTGTGATATCCC	alt_4684_upstream	10	10	19	17	14	15	9	12	16	14
CGAATAGGTGTTTGGA	alt_4684_upstream	148	194	239	160	187	172	194	160	207	126
CACCCACCTTAGCTTT	alt_4684_upstream	18	28	27	27	38	24	30	27	45	21
TCCACATCGGTAATGA	alt_4684_upstream	25	24	26	31	15	27	16	20	17	20
CACAGCGAGCCAGTCT	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TGCCCTGCGGTGCGGC	alt_4684_upstream	115	127	140	105	112	76	116	103	112	95
TGGGGTTCAATTCCCG	alt_4684_upstream	10	6	9	12	10	17	9	5	7	10
TTTGCAAGCTTCATCC	alt_4684_upstream	12	13	20	19	24	12	28	11	22	10
CCGTGACCTGGGGTAA	alt_4684_upstream	35	42	30	21	39	32	50	22	55	23
TTGGAGGTGAATAGAT	alt_4684_upstream	28	27	23	46	36	39	45	24	46	39
CGTCAGCCAGTCTATC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATCAGTTGTGCA	alt_4684_upstream	18	23	16	17	12	14	23	13	21	12
TGGATCCGAACTTATT	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCTCAACATCTGA	alt_4684_upstream	6	4	0	4	5	4	3	2	0	6
GCATCCGGCAAAAACG	alt_4684_upstream	64	31	53	57	34	37	50	48	51	52
GTCCACTGAGGTTGAG	alt_4684_upstream	40	25	41	38	30	24	33	40	29	28
ACCCATTCCGCGTAGA	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTGCCCATGACGT	alt_4684_upstream	5	14	21	15	12	11	11	14	10	11
GACTCGCCACGTTGCC	alt_4684_upstream	3	4	12	9	9	12	5	9	5	12
TTTGAACCACCTGAAC	alt_4684_upstream	25	13	25	20	19	33	30	26	20	23
CTTATTTGTTCCATGA	alt_4684_upstream	22	27	25	27	17	19	19	18	19	15
ACTATGATTTGCGCCT	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTATGCCTTCGTT	alt_4684_upstream	44	29	37	47	27	34	48	29	26	26
TTACAAATTAGCGGGC	alt_4684_upstream	40	23	60	40	42	44	43	44	20	50
TGTTTGGTATCAGGAC	alt_4684_upstream	41	25	42	33	32	32	35	29	31	31
TTTACATTTTTCGGCT	ref_4684_upstream	72	60	84	70	45	85	77	70	83	62
CCGGTACTGGCTATAT	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TTCACATGTCCGAGCT	alt_4684_upstream	21	18	19	21	20	22	17	15	6	30
CGTGGCTACTTTTCCG	alt_4684_upstream	9	10	24	19	7	14	14	16	16	11
TGATATGACTACTAAT	alt_4684_upstream	69	58	79	51	55	51	51	64	30	45
GTTACATATGTCTTAC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TCTAAACAAAGTCGTA	alt_4684_upstream	9	9	15	14	12	12	7	18	17	16
TTTTTCGGGCTCGTAA	alt_4684_upstream	137	141	174	167	128	155	156	132	138	124
CGCGCTTCACGTTCTA	alt_4684_upstream	75	80	90	73	66	77	69	58	80	75
ACCGCTGGTCGTTCTA	alt_4684_upstream	42	23	36	26	22	23	44	28	31	29
AGCCTGAACGAAATGT	alt_4684_upstream	124	125	153	127	139	125	124	95	162	111
CCCTAAATGGTGTCCT	alt_4684_upstream	11	11	13	10	3	8	5	9	11	5
GAGGTTTCCCTCCTTG	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
GATCCCCTGTGACGGT	alt_4684_upstream	64	75	68	72	69	53	72	41	98	47
TGCAATAGTGACTTAC	alt_4684_upstream	5	7	13	6	8	11	9	6	13	4
TGCTCACGTCGTATGC	alt_4684_upstream	27	16	33	18	22	12	18	22	37	20
CATGTCTTGATACTGG	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
CGAACGTTTGGTCAAA	alt_4684_upstream	9	6	20	6	8	6	9	6	9	4
TGATAAGAGATAGGGA	alt_4684_upstream	1	0	0	0	0	2	1	0	1	0
TTCTTATCTTAGCGTG	alt_4684_upstream	22	17	28	17	21	18	19	14	16	21
CGACCCCGCGAGAGAT	alt_4684_upstream	22	12	16	25	14	24	16	17	16	18
TCCTCCAATTTAATTT	alt_4684_upstream	0	0	0	1	0	0	0	0	0	0
ATCGCTTATCTAAGAG	alt_4684_upstream	38	32	50	54	33	33	36	39	42	38
TTTTTATATCTAGCTT	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
CGCTGACGAATTTTGA	alt_4684_upstream	11	9	19	17	10	11	13	16	16	16
GTCAAGTTATTTGTCT	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGTGTGAGGGCTT	alt_4684_upstream	20	22	15	25	13	27	25	16	16	20
AATCTATGGAACCACC	alt_4684_upstream	9	7	9	18	15	8	16	4	9	7
TTTTTTATATCTAGCT	alt_4684_upstream	345	314	411	358	272	335	342	297	345	303
CATCAATTCAGCCCCG	alt_4684_upstream	15	7	7	8	11	17	13	11	12	12
CGCTAGCAGTCTCGGG	alt_4684_upstream	8	14	20	18	19	10	16	18	24	21
ACCATGTGTATATGGC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
ATTACTCTCTTTTTTA	alt_4684_upstream	6	10	11	17	13	13	8	27	10	15
GTAGCGAGTTCATTCA	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCCACGTGTTTAT	alt_4684_upstream	44	47	39	46	31	39	37	40	36	38
TTGCTCCCGTCCGGCG	alt_4684_upstream	12	27	14	8	36	13	26	12	27	10
CAAATAATACATATTG	alt_4684_upstream	3	3	6	6	3	0	1	5	0	0
TTGTCATCGGAATTGA	alt_4684_upstream	14	20	10	16	21	10	18	13	17	12
TGGTAGTCGTCTAGAT	alt_4684_upstream	7	9	12	11	7	8	7	9	9	11
GTGTGCTATGGTCCCC	alt_4684_upstream	39	14	31	40	35	37	33	45	31	35
TCCTGACCGAATAGTC	ref_4684_upstream	114	122	134	144	115	94	105	112	142	116
TCTTTACTCAACAATC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
CGCTTTTATATTTGTC	ref_4684_upstream	150	100	135	126	96	125	103	109	99	100
CGGTAGCATGTTACCC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
TTAAACACGGCGCTTG	alt_4684_upstream	11	9	14	13	15	11	10	7	4	13
CTCTCCACTAACCCAG	alt_4684_upstream	160	136	136	123	158	133	164	118	163	146
CTACCGTTACTACGGG	ref_4684_upstream	68	76	71	64	51	48	66	56	92	63
AAACCTCGGTATACAC	alt_4684_upstream	35	28	51	39	39	44	53	32	50	46
AGTTACGCTGAGTTAC	ref_4684_upstream	202	202	229	203	158	173	181	196	176	185
CGATTCTGCATCAGCG	alt_4684_upstream	1	7	4	4	2	4	0	4	3	2
AATGTAAATTTTCGTC	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
ACGACAATTCACGAGT	alt_4684_upstream	84	85	141	88	78	91	65	89	81	90
GTACTTGACTATAATA	alt_4684_upstream	11	22	28	22	28	16	28	12	22	10
GTGATCGAAAGGATCT	alt_4684_upstream	12	18	13	8	11	18	20	17	12	18
GGGCCTTCCCAGGGCC	alt_4684_upstream	23	19	20	16	22	14	14	12	21	23
TTCCTCCTTATCCGCG	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTCATTTGCAGA	alt_4684_upstream	39	31	51	33	28	24	38	38	32	28
GCTTCGGCACCTTAGT	alt_4684_upstream	12	15	17	18	9	13	18	11	17	10
CTGTCCGTCTACTATG	ref_4684_upstream	88	48	115	92	55	87	44	112	55	87
ACATGAATCATGTAGT	ref_4684_upstream	46	11	25	32	8	29	11	34	14	29
TTATCTCCGGCGGAGT	alt_4684_upstream	18	28	25	26	32	28	33	20	18	33
GCATGTGGTCATGAAA	alt_4684_upstream	49	41	51	49	48	34	52	48	57	28
TTGCCTGAATGTAACA	alt_4684_upstream	37	46	32	36	34	42	40	33	37	26
CGTGAATTACGTTTGA	alt_4684_upstream	0	0	0	0	0	0	0	0	0	0
ACGCGGTATGCTTCAA	alt_4684_upstream	22	15	21	14	20	20	19	27	17	17
GTCTTACGATGGCTCT	alt_4684_upstream	21	27	36	49	29	30	35	29	30	23
CTGAGCAATCTCGGAC	ref_1363_RC	104	107	150	134	110	133	107	121	118	116
GTCCGCCCCATCATTC	ref_1363_RC	68	44	70	62	42	58	43	61	48	44
GGTGTGTTTTGGGTAC	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
ATGGTATTCTGTGATT	ref_1363_RC	11	17	17	20	14	12	21	6	20	8
TTTTCTAGGCGGAATC	ref_1363_RC	17	15	24	27	18	17	26	23	12	16
GTATGGCGTTAGTTAT	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
ATTTGGTCGCCCCTCC	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
GTTTCAGCATCGTTAT	ref_1363_RC	55	57	82	46	71	72	51	74	92	47
TGTTTCCTTGATTCTA	ref_1363_RC	217	162	243	217	161	206	171	214	189	200
AGTCTCGTATCAATTG	ref_1363_RC	16	18	27	17	28	22	25	15	37	21
ATTCGCCGCATTAATT	ref_1363_RC	27	44	45	44	60	36	51	37	39	38
GTAATAATGATTAGGT	ref_1363_RC	15	10	22	18	14	14	20	15	18	10
CATTAACCTCATTTGC	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
CCAGTAGCGTTCCACG	ref_1363_RC	116	109	124	101	133	117	126	98	92	114
TCTCTCGGTGATTAAG	ref_1363_RC	38	33	45	54	38	42	33	33	47	41
CGTGTTGGCTTTTGAG	ref_1363_RC	50	36	60	54	54	38	41	35	64	41
CATGTTCTCGTTACTG	ref_1363_RC	45	40	39	21	33	29	35	31	57	32
GCTAGCTAGTGTGTGC	ref_1363_RC	150	171	158	141	196	113	193	128	190	103
TCGGTTATTTGCGTTG	ref_1363_RC	23	11	19	22	20	14	15	20	22	19
ATAACAATTGTAGGGC	ref_1363_RC	59	62	60	70	61	66	69	80	70	49
ACACGAGCGTTTACTT	ref_1363_RC	21	30	32	20	20	23	25	18	23	21
TGTGCGTTATTGGGGA	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
CTTCCGTCTCTCCCTC	ref_1363_RC	11	5	15	18	19	13	11	13	17	9
AATTTAACTCTGCTGC	ref_1363_RC	266	251	286	242	263	225	247	263	305	230
ATACTATCTCCGGGAT	ref_1363_RC	20	26	37	34	20	40	35	29	33	22
TGACGGCATACTTTGT	ref_1363_RC	119	98	132	122	110	89	111	91	134	116
CAAGCTAACCAGACTG	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
GTCTTCATGGAGGTCG	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
ACGTGCTCTGGGCGCC	ref_1363_RC	73	54	84	72	64	66	50	75	63	72
GCAGTCATGGAATTTG	ref_1363_RC	19	28	26	22	24	20	19	21	20	22
AATGTGTGAACCGTCA	ref_1363_RC	82	91	97	68	85	80	75	75	97	67
GTACTACTTCCATATC	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
GCCAAATCTTTAGTTA	ref_1363_RC	0	0	0	0	0	0	0	0	0	0
CTGGTGGACATCTGAC	ref_1363_RC	14	9	16	13	12	6	10	7	16	9
AGGACATGCTCCGGCC	ref_1363_RC	9	0	5	4	2	0	5	1	3	2
CTGTCCAATGCTTAAT	ref_1363_RC	56	76	79	55	69	58	90	46	97	69
CGACCTGTGCATACAG	alt_3991_missing	163	30	172	177	36	132	26	158	27	128
TATTGCATGATTATGG	alt_3991_missing	0	0	0	0	0	0	0	0	0	0
CAGTGCTTTACCAGAG	alt_3991_missing	8	4	7	6	4	6	4	6	4	8
TGTAGCAACTATCCGT	ref_3991_missing	207	44	261	210	33	185	43	143	57	168
GCATCTTGGGTTCTAT	alt_3991_missing	465	86	557	486	101	429	106	484	112	404
TGGAACCTGGGTTTGC	alt_3991_missing	0	0	0	0	0	0	0	0	0	0
CAGGATCCGCATTGAA	alt_3991_missing	0	0	0	0	0	0	0	0	0	0
TAAATCTTTAGGGGGG	alt_3991_missing	650	101	774	757	93	628	92	630	103	609
TTTAACCACTCGAAGT	ref_5165_RC	8	4	10	4	4	6	7	8	12	6
TGCCCTTGGTACATCA	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CCCTTTGCGATGACTG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TTGTTCCTTAATGTAA	ref_5165_RC	8	20	12	12	9	5	12	12	17	11
AGATTCGTGGTACAAC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CCACATACAGCCGATC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TCCACCAGCTCTCGGT	ref_5165_RC	6	9	14	12	4	11	8	5	12	7
TGTACCACCGTTACCC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TTCTTATTCAAGAGTC	ref_5165_RC	9	14	20	18	23	11	18	16	22	18
GAGGGATTTGTCTGTC	ref_5165_RC	31	25	44	17	16	28	22	30	30	21
GTCAGTTTTTTCGCCA	ref_5165_RC	14	24	27	14	18	15	16	11	14	18
ACTCCCAGTGTAAAGC	ref_5165_RC	7	14	12	6	8	7	13	8	9	2
TGGTTGACCTTCCTAT	ref_5165_RC	69	60	69	64	72	53	54	75	74	50
GCGACTACGGGAAGCT	ref_5165_RC	27	30	42	45	35	32	40	30	31	26
TACCTCTAGGGGAGTC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TATTTAAGTGTCCTTT	ref_5165_RC	91	88	118	90	87	92	80	71	71	85
TCGCAGCGGGAATTAT	ref_5165_RC	83	81	134	83	102	68	78	106	89	64
CACCTGAACAGATGGT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TGCGGACCAACTATTC	ref_5165_RC	11	2	23	9	4	10	5	4	2	12
TAGTTGGTGCTGACTA	ref_5165_RC	76	49	61	64	39	44	51	49	49	50
CCCCGCGGCGCATTGC	ref_5165_RC	20	16	26	24	34	22	29	13	31	17
CTTGGGAAGTTGTGTC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CATGGATCAATCGGCC	ref_5165_RC	3	2	10	2	3	2	3	3	5	3
ATATTTTTATCGGGCT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TTTAAGTGGCCCCCCC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TTTCCGTACTCTTTGC	ref_5165_RC	22	27	17	27	19	15	18	22	25	24
TCCGGCTAATGGTCGG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCTCACGGCCGG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GGCTGTTGAGTTCCTA	ref_5165_RC	20	24	28	20	20	16	24	24	11	21
ATCCAGCGCACATTTA	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
ATTATTTTGCTTATTC	ref_5165_RC	14	18	26	20	19	18	19	22	10	16
CTCTGTGCCTCCTGGT	ref_5165_RC	8	9	11	13	17	9	8	5	10	12
CCGTGCACTTCGTAAC	ref_5165_RC	74	72	107	64	88	60	86	91	86	75
GGAGGGAGAATTATTT	ref_5165_RC	8	9	19	10	10	15	13	19	20	13
AGTCACCCCATCCGTT	ref_5165_RC	18	16	34	21	16	25	14	10	16	11
AGGTCGGTGTCAGGTT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCTGGTATTTTG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CCCCCAGGGGTCCGCG	ref_5165_RC	54	35	73	43	40	58	38	53	44	52
TGCTATATGTTAAAGG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GCCTTCCGAATTAACC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGCGCTCCGTGT	ref_5165_RC	46	51	74	59	46	49	55	65	58	49
GTCTCCGGTGTACCTC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TTCGCCCAACCCGGTT	ref_5165_RC	44	46	52	40	43	33	38	43	36	36
TTTTTGTGCTCACGAT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
ATAGCGACTAACCTTC	ref_5165_RC	62	80	61	48	62	41	77	61	63	50
ATTGTCACTGATCGGA	ref_5165_RC	29	20	25	22	18	9	15	24	26	20
GTAATGAAAAGCGGAA	ref_5165_RC	67	60	84	61	54	71	59	74	64	54
GCCCTATTTTGTGGAT	ref_5165_RC	10	13	22	18	19	14	14	17	13	10
CTGGGCCCGGACGATC	ref_5165_RC	24	19	21	17	9	22	20	26	24	23
GTTGAGCATCTGGCAT	ref_5165_RC	4	7	3	5	7	8	4	8	6	2
GGGTCTGGCACTTTCG	ref_5165_RC	8	6	9	13	7	12	3	4	8	15
TCTCAAACCGGATAGA	ref_5165_RC	14	6	20	7	26	14	18	9	15	11
TGCACGTCAGGCTTAT	ref_5165_RC	8	11	12	1	9	7	9	3	8	4
CCGTTGTCTTACAGTT	ref_5165_RC	12	7	9	11	20	17	5	6	16	9
CAATGTACTTGCTTCT	ref_5165_RC	0	1	3	7	0	0	1	1	3	11
ATAGTGCACATTTTCG	ref_5165_RC	109	64	121	110	102	78	108	90	87	93
CTTGTTCTAGCAGACC	ref_5165_RC	17	6	9	14	19	7	11	17	17	14
AGCTGCCACCAATCCC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TAGAATTTTATGCAGC	ref_5165_RC	16	16	28	13	23	23	18	15	17	18
TGCAGATTTTCCTTAA	ref_5165_RC	9	17	14	14	6	8	9	8	6	12
GTTACTTATTATTTGC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TCGTTAGTGGCTCAAC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CCTTCGTGCTTCCGTT	ref_5165_RC	23	31	25	24	22	15	28	19	30	18
GCATGCGCCCTAATTA	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
AATGGCTCCTGTCCTC	ref_5165_RC	30	28	53	29	33	54	36	29	44	29
TATGGGCTATGGGGCA	ref_5165_RC	36	21	39	18	17	22	19	21	31	30
CTTGCTTATTATTATC	ref_5165_RC	12	4	22	14	15	15	12	25	18	11
TTCTAACGTAAGTGCG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CACATTGGCCTGTATA	ref_5165_RC	3	4	6	3	3	1	5	4	3	4
CTCACGCGGGCGATCC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TTGTAATTACAAGGTA	ref_5165_RC	11	21	27	30	22	15	17	25	16	26
GGCGTTGAGGCTATCG	ref_5165_RC	21	30	36	29	29	33	30	33	31	13
TATTTAACTACTTCGT	ref_5165_RC	44	40	53	38	46	52	53	42	42	36
TCGTGAATGTCCGCTC	ref_5165_RC	9	7	13	13	10	10	5	8	6	8
ACATGAGCTCGATGAG	ref_5165_RC	45	51	65	48	48	64	56	47	42	42
CGGTCCTTTGACCAAC	ref_5165_RC	4	8	8	7	6	3	1	4	5	9
TTTGCCAGCAACTCAC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
AGAAAATCCCTATGGA	ref_5165_RC	45	39	52	56	41	40	54	43	42	45
CTAAGTCAGTTGCCAA	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TGCGAGCTTTCTCGTG	ref_5165_RC	46	32	49	44	46	29	39	28	42	18
CTGCGACTTACTCGTG	ref_5165_RC	25	20	28	22	24	36	20	19	31	22
AGGGTTAGAGGTCTGT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GTCCGCGGGTTATCAA	ref_5165_RC	24	25	27	27	26	23	9	22	36	24
GTTTAACCCTGCGCCG	ref_5165_RC	37	50	57	39	54	56	38	46	43	42
GTCCGTATTTGTGATC	ref_5165_RC	15	8	12	9	11	8	10	14	10	10
ATTCGATACTTCGAGA	ref_5165_RC	83	71	102	133	80	86	122	81	108	65
GTATTATCGTGTAATG	ref_5165_RC	26	23	25	29	24	17	30	24	38	20
TCGAAGCGGGCGGGTT	ref_5165_RC	7	4	6	16	10	8	8	9	9	8
GGATTGCTTAGTTATT	ref_5165_RC	30	17	29	17	30	22	28	21	19	22
CGTTATCTGTGCATCA	ref_5165_RC	1	3	3	4	6	3	2	2	6	0
TTAGCACTAAGGCTCG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CTTATAATTCATAACG	ref_5165_RC	55	45	64	60	55	57	45	58	44	45
GGTTCGTTTCAATCAT	ref_5165_RC	41	25	22	28	34	29	34	32	31	25
CTCACCCCATCATTTT	ref_5165_RC	22	25	30	12	33	14	27	24	27	19
TTTAGGGGTCGTAACT	ref_5165_RC	62	41	83	63	73	58	67	52	58	48
GATGGACGCATTTGCT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TCCTATTCTTTTCTTT	ref_5165_RC	29	17	29	42	22	23	18	30	14	18
GCAATCTGAACCGAAC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GTTTGGCAAACCGTAT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CCTCATTAGTTCTAAT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CATGGCCCGTACCATT	ref_5165_RC	36	21	29	31	26	23	35	20	27	21
AACGCCCCCAGCTCTG	ref_5165_RC	26	20	35	40	20	31	25	24	22	42
CTGGGACGTAAGGAAG	ref_5165_RC	15	21	19	14	19	19	23	19	20	12
CGCACTGATTTAGTGG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TGCATTCTGCCGCGGT	ref_5165_RC	42	33	53	30	32	44	52	35	42	42
CGTCCCCTTCTTTTCT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TCCTTCCAAATTGTAT	ref_5165_RC	27	16	32	25	19	26	21	16	22	12
CTGTTTTAGTCACTCG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CCTTTAAGACGTAGGT	ref_5165_RC	18	78	39	31	63	25	77	35	66	36
AGGCAAGCTACCTCGA	ref_5165_RC	8	15	11	18	10	8	7	10	3	13
GAATCTTTTTTCGGGC	ref_5165_RC	5	6	3	9	2	3	6	5	8	5
GGTTGAAGCGCACAGA	ref_5165_RC	46	49	45	47	43	52	35	48	41	42
GCCTAGTATCGAAGCC	ref_5165_RC	36	25	39	35	39	23	18	33	31	18
TTGGGGCCGACGCTGC	ref_5165_RC	222	173	234	178	149	207	183	170	159	206
GCCATCTTCCGCAACT	ref_5165_RC	61	53	82	74	63	65	61	58	62	60
CCGCGTTCCACTATAA	ref_5165_RC	75	86	92	95	120	69	106	74	122	71
GCAGGCTAAAGATCTG	alt_5165_RC	25	17	24	27	23	29	37	13	33	26
GGTACGAACCGGCAAC	ref_5165_RC	17	20	17	15	16	19	20	15	12	20
CCAACCACTGTGTAGA	ref_5165_RC	0	13	1	1	8	1	5	2	5	1
ATAAAGTTGGTGTGTC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GAATTGGTCCTCCAAC	ref_5165_RC	27	17	37	31	26	22	31	22	19	27
TTTTCATGCTTTAGCG	ref_5165_RC	18	28	21	34	24	19	26	23	25	19
CCAGGTCACCCCCTCA	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CTTGTTTTGATATAAC	ref_5165_RC	118	109	125	97	161	118	113	115	126	111
TACACCTATTCTGTAA	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GTTCAAATTTGATTAC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CGACATATCAGGGCGC	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TACGAGAATCCTATCC	ref_5165_RC	49	69	80	102	89	74	80	75	70	68
AAAAGACTAAACAGTG	ref_5165_RC	48	45	52	46	60	50	41	38	47	46
TAAGGTTTCGTACATA	ref_5165_RC	16	15	30	25	21	22	18	30	28	16
AATTTATTTGTGGCTC	ref_5165_RC	0	0	0	0	0	1	0	0	2	1
TGCCTGTACGTATTCT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GTCTTAGTGAACTCAT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CGCAGGATATATTCGG	alt_5165_RC	77	99	87	94	103	75	127	87	100	74
GTGGCTAGCGTAGGTC	ref_5165_RC	2	2	3	6	0	1	1	3	6	1
TTCGATAAGGTCGTCC	ref_5165_RC	78	65	93	71	74	70	85	99	89	85
GTAATGACGAATAGCG	ref_5165_RC	120	78	146	131	73	101	96	104	103	89
TCCGGCTATATGGCCC	ref_5165_RC	42	56	35	37	35	28	52	25	50	26
TTCCCACTTGGTTTCA	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GCCCACTCCGTATTCT	ref_5165_RC	20	14	25	18	21	20	20	15	13	14
CATTATTAGCCAAAAT	ref_5165_RC	31	26	34	17	18	10	37	24	33	7
GCGCTCGGAGCTGAGA	ref_5165_RC	41	20	44	22	25	29	39	45	33	25
GAAAATTATAATCAGA	ref_5165_RC	15	15	27	21	15	16	12	18	16	12
TTTTGAGTTTCCCTAG	ref_5165_RC	7	6	11	14	15	9	13	11	11	8
GAAGGCAACCCCTGTC	ref_5165_RC	64	55	85	60	72	48	52	66	68	70
AGTATGGCTGACCTGA	ref_5165_RC	14	12	22	19	16	9	7	18	18	9
AGGTTGGCTTGTCTTG	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CTTCATTTGCCTATCT	ref_5165_RC	24	21	16	14	21	17	28	18	32	15
TTTAACGTTAGACAAG	ref_5165_RC	0	1	0	4	2	1	0	0	2	1
GTTAGGCTATAGACAT	ref_5165_RC	31	25	35	28	32	31	25	13	28	23
TTACATAGTGCCTAAT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
TATAGACCAGGCAGGT	alt_5165_RC	23	29	25	38	25	17	35	32	26	15
ATAATTATGTTCGGGT	ref_5165_RC	1	0	2	2	1	0	0	1	2	0
TACTTAAAACCGATAA	ref_5165_RC	30	23	27	25	23	29	19	28	31	19
CGGGGCCATAACACTC	ref_5165_RC	17	41	19	31	28	23	36	18	30	12
TAGGGTTTAGAGCAGT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
CTACTTGATGGCGTCA	ref_5165_RC	92	75	117	75	66	97	66	89	78	75
CGGCCGTGTAGTGACT	ref_5165_RC	61	99	81	60	86	49	108	62	112	41
TTATTGACCGCTGATG	ref_5165_RC	19	16	27	24	66	17	38	33	48	24
TGGCGGCTATCTAGAT	ref_5165_RC	0	0	0	0	0	0	0	0	0	0
GTGTCATTTTCCTCTC	ref_5165_RC	24	10	13	16	12	11	18	12	12	15
TGGCCTTCCCAGGTTG	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAAAGAGAAGGCC	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
GGTACGCGTACTCCCG	alt_3117_reverse	13	27	14	9	23	18	20	8	17	11
GCGACCTACTTCAGTC	alt_3117_reverse	47	53	66	70	66	58	74	56	55	72
GCCTCTGGCTCGGTGA	alt_3117_reverse	45	33	59	37	52	50	37	42	30	34
GGACATAGGGCCTTTT	alt_3117_reverse	56	29	54	64	46	34	35	48	51	39
TTTATCCGGCATGATT	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
ATAGAAACGCCAGGTC	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCCTTCCTTTACG	alt_3117_reverse	26	45	44	28	35	26	30	28	31	26
TAACCCTAGTAACGGG	alt_3117_reverse	98	90	156	114	96	100	94	115	85	110
CGGGCGCTGCGGGGTA	alt_3117_reverse	37	43	34	29	37	39	40	45	42	34
GGTACTCGGTGTAGTG	alt_3117_reverse	28	40	30	22	28	34	34	35	28	20
ACAATTACCAGCTACA	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTAAGTCGCCCAT	alt_3117_reverse	30	23	33	23	19	28	22	19	30	33
TATTTGCCGCCTTTCT	alt_3117_reverse	72	67	82	80	64	69	64	76	84	48
TCTATTAATATTTTTC	alt_3117_reverse	8	0	2	2	2	3	2	6	4	6
GTTAATTACCGCTTTA	alt_3117_reverse	24	12	26	23	30	16	27	23	19	26
GTAGTTCTTTGAGGGG	alt_3117_reverse	14	21	27	15	27	16	21	17	19	10
CCGGGGTCTGATTTGT	alt_3117_reverse	12	6	17	12	9	14	9	6	11	12
ATTTTCGCGGTTAATG	alt_3117_reverse	34	49	40	47	42	39	54	35	42	29
GAACGTAAAGATTAAG	alt_3117_reverse	21	9	14	7	16	13	17	16	13	8
ACCTAAATCCGATAGC	alt_3117_reverse	41	51	43	46	57	29	52	27	54	26
TGTCCGAAGGGATTAA	alt_3117_reverse	91	75	143	103	97	98	92	80	82	87
TGTATTGCGCGCTATA	alt_3117_reverse	49	49	52	47	47	44	56	48	40	46
GTGTATATTGATTAGT	alt_3117_reverse	368	419	440	361	379	367	462	369	470	317
CAACAGATTTGTTACC	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
AACCATCAGTTTTGAC	alt_3117_reverse	21	15	16	21	21	17	10	15	18	13
CATGTTTTATGACTAC	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
AATTAACAGCTGTTAT	alt_3117_reverse	73	42	98	90	58	68	56	93	67	93
ATCTAGACACACCGGA	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
CAAATCTAGCATTGAT	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
TAACTACTCACGCTTG	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCCGTGAAACGCA	alt_3117_reverse	40	19	46	53	27	29	41	40	42	38
CCGCGCATTATAGAAG	alt_3117_reverse	25	29	41	29	20	21	35	26	41	31
GTTGACCCTTAAGCTT	alt_3117_reverse	21	12	18	29	13	18	18	11	20	20
ACCTCTATACATTAAT	alt_3117_reverse	42	43	54	37	38	41	33	39	38	33
ACTTTTTATTCACGCC	alt_3117_reverse	163	120	182	162	146	141	179	162	139	134
GATTCATTAAGTACGG	alt_3117_reverse	38	19	37	32	28	22	22	32	25	26
GCTGGCTCTATAATTG	alt_3117_reverse	34	30	40	32	37	45	27	23	36	21
TCCAGTTGGTGCTCGG	alt_3117_reverse	175	183	205	170	182	154	154	125	186	154
GAACCCTGACGTTTGC	alt_3117_reverse	11	8	14	2	13	6	12	6	9	8
TCCGCCGTTCAGGCTT	alt_3117_reverse	93	95	112	90	96	86	96	90	112	86
GTATGATTTGTATCAT	alt_3117_reverse	27	25	38	23	34	29	22	29	28	37
AGCCACTTACTGGCAC	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGCACGTAACCGG	alt_3117_reverse	30	55	41	45	56	38	51	36	57	44
TGACCGGTACGACGAA	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGAAGGGCTATTA	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
TATTGTCTTTTACTAT	alt_3117_reverse	33	31	63	40	31	31	38	33	56	26
CTACCTCCCTTCTAGA	alt_3117_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGTTACGTGCTTT	alt_3117_reverse	14	18	26	18	15	17	12	20	19	19
CTTCCTCCACCATCAT	alt_4574_RC	185	210	225	228	216	174	258	189	242	175
ACTGTAGCCGGCCTGG	alt_4574_RC	3	15	16	5	13	8	11	16	14	9
CGTTGCCTCTAGAACA	alt_4574_RC	0	0	0	0	0	0	0	0	0	0
ATCGTAGTTGCCACGC	alt_4574_RC	38	34	39	50	47	42	43	38	62	24
TCGTGGTGTCGTCGTC	alt_4574_RC	5	8	5	4	9	7	3	5	6	2
AATGACCTGTCTATCG	alt_4574_RC	34	38	31	37	28	36	35	22	45	21
CGCGTATCTACTAGGT	ref_4574_RC	12	27	23	7	17	12	35	13	17	13
TACCTGTTACCAAGGC	alt_4574_RC	100	185	150	119	166	117	179	113	209	96
CTTCCCCCGGCACGGA	alt_4574_RC	15	15	9	22	20	16	16	17	16	12
GTATTGGTAGGGCATC	alt_4574_RC	0	0	0	0	0	0	0	0	0	0
TTACCTTCCAGTGAGA	alt_4574_RC	1	11	6	1	6	0	5	2	2	1
TTTTAAGGATACTGTG	alt_4574_RC	19	24	17	17	16	14	23	22	16	8
AGCAATTCGTGGTAAG	alt_4574_RC	7	13	6	11	13	8	10	7	14	15
CGATCAGCGCTACTGT	alt_4574_RC	0	0	0	0	0	0	0	0	0	0
GGGGGACAGACTGGCT	alt_4574_RC	7	7	3	7	8	8	7	1	9	7
CTCTAGTGCGTCTATG	alt_4574_RC	70	99	72	64	106	57	115	57	107	56
TCTTTATCAGTAACAG	alt_4574_RC	0	0	0	0	0	0	0	0	0	0
CTTTCGTCTTTGACAT	alt_4574_RC	33	55	30	22	55	35	52	38	50	29
TGTTGCGTCTGCCTCA	alt_4574_RC	19	20	17	27	20	13	21	12	24	12
GCTTCATAGCTAGTTC	alt_4574_RC	11	28	26	24	23	11	34	22	23	17
AACTTGAAGCCCAGCG	alt_4574_RC	32	31	39	32	38	40	25	25	32	22
CACCTCCGACGCCCGT	alt_4574_RC	7	11	11	10	2	8	11	8	8	4
ATGACGGATCGGGCCA	alt_4574_RC	42	32	40	44	38	26	31	32	32	25
AAATGTACCTCTCTTG	alt_4574_RC	10	5	9	6	8	7	4	2	5	4
ATTACCTTTTGTCTTG	alt_4574_RC	48	79	27	32	61	31	70	43	64	29
GTCCATTGTCGCGCCG	alt_4574_RC	15	19	20	16	16	11	10	9	26	12
TCGCGGCTCGTCGATT	alt_4574_RC	15	34	23	27	37	37	31	24	32	18
TTACCCCGCTTATAGC	alt_4574_RC	0	0	0	0	0	0	0	0	0	0
AAAATCGATACGGCAC	ref_1786_fdr	59	32	86	70	33	70	21	76	35	60
ATGGTACAGCTAATAG	ref_1786_fdr	44	19	41	50	31	44	23	43	37	55
TTTATAGTACATGCAG	ref_1786_fdr	54	29	48	63	14	44	22	52	27	38
CCACCCGACCCGGACC	ref_1786_fdr	32	23	59	49	18	34	21	51	39	34
GTCGCCTTATACCGAG	ref_1786_fdr	555	226	607	544	247	491	265	565	272	524
GCCTGTAAATTGTTCG	ref_1786_fdr	110	77	115	104	57	87	64	97	62	92
CGTGGGTGGAACCCAA	ref_1786_fdr	26	12	29	10	12	23	9	21	11	17
CCTTTTTGCGGGTGTT	alt_1786_fdr	208	192	271	243	203	234	208	236	241	227
CCGTTATTGTGCGTCG	ref_1786_fdr	24	49	49	37	50	50	62	41	61	40
GTTCGTGTTTTCCCGC	ref_1786_fdr	97	40	139	101	33	121	47	104	53	93
GACACGTGCCTTTTAT	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGATACCATCGTA	ref_1786_fdr	347	164	448	372	163	282	182	368	184	363
ATCTCTCACCTCGCTA	ref_1786_fdr	83	32	75	80	28	42	32	56	36	60
GATTGAATGTCGCAGG	ref_1786_fdr	79	24	58	59	16	43	25	54	28	42
TTTTTCGCGTTATCCA	ref_1786_fdr	52	33	61	68	18	62	26	68	18	69
TATGGGGAACGACCGT	ref_1786_fdr	30	24	30	21	14	16	17	18	13	22
GTAGCTCTCCGTCATT	ref_1786_fdr	80	79	138	109	78	95	85	95	96	74
TTCCCCCGGAACGCTG	ref_1786_fdr	188	94	170	187	71	141	83	144	90	152
CTATTAGTCTATACGG	ref_1786_fdr	35	36	47	34	46	30	36	39	33	46
TCATGTGACCGCGGTT	ref_1786_fdr	220	81	277	261	89	238	90	176	85	162
GCGGGACCCCTTTGGT	ref_1786_fdr	87	37	107	98	38	98	59	87	57	63
ATAGATCATCGTGCAC	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTTGAGACAACT	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
AATCAAACTGAGTCGA	ref_1786_fdr	140	67	180	142	77	154	66	155	65	130
CTATGTGTTCTATAGT	ref_1786_fdr	39	28	43	40	25	37	15	33	29	29
CCGAGTTTGACTGTGC	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
GACTACTGCGCGTCAT	ref_1786_fdr	419	239	518	511	238	403	268	413	257	368
AGGGTTGCGTTGTGGC	ref_1786_fdr	21	10	23	24	9	24	11	16	12	15
ATCTCGCGATCTGCAC	ref_1786_fdr	148	78	192	168	74	192	65	147	72	109
TTACGAAGGCCAGATT	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTCTTTTAAATTG	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
GTACCCCTCGAGCCTC	ref_1786_fdr	84	32	100	86	29	74	35	68	37	65
ATTACTTCATACCACA	ref_1786_fdr	199	83	234	203	95	173	98	170	99	153
TTGTCCAGTACGCACA	ref_1786_fdr	188	103	212	237	104	185	93	169	102	170
CCTGATTTACTTAGCA	ref_1786_fdr	63	27	95	82	46	62	45	69	57	58
TGCCAGCTGACAATTA	ref_1787_fdr	67	31	100	106	52	96	48	86	46	68
CAAGTATCTCCTAGAC	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCGATTTAATTTT	ref_1786_fdr	17	5	22	15	10	13	7	11	1	19
TTCACGCTCAACGGGT	ref_1786_fdr	532	190	624	542	262	500	306	505	243	442
GACGGATCGCCTTACG	ref_1786_fdr	82	47	138	108	51	103	60	97	59	103
CGTCGCACAATAAAGT	ref_1786_fdr	0	0	0	0	0	0	0	0	0	0
ACATGAAAAGAAATTC	ref_1786_fdr	496	167	570	517	179	399	160	451	155	402
CTAATAAGAATCTCTT	ref_1786_fdr	141	50	186	158	77	145	58	174	58	165
ACTGGCATTTTTATCC	ref_1786_fdr	28	7	33	28	2	20	19	23	7	25
AAAACGACAACGTGCT	ref_5365_RC	169	94	156	167	102	147	114	140	121	129
TCACGCTCTAGAACAG	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
CCGCCAAGTTCACGTC	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
GCTTCTGTTATGCCGT	ref_5365_RC	21	19	37	31	23	19	18	31	26	26
TTTGAATAAGCTTTAT	ref_5365_RC	59	22	72	47	32	34	34	50	30	55
TGCCAATTTCTTACCC	ref_5365_RC	0	0	2	0	1	0	0	1	0	0
AGACATATTATGTATC	ref_5365_RC	16	13	15	15	10	14	17	8	12	19
TCGGTGTATATTGGTG	ref_5365_RC	11	28	18	20	20	20	29	19	22	15
TCCATAGAGGGTTGAA	ref_5365_RC	104	83	96	115	92	109	68	115	84	91
AGCCCTCGATAAGTTG	ref_5365_RC	7	5	2	2	6	3	3	5	4	3
GAGCCCTCCTCTCCTG	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
GTGTCAGTGATCTGCG	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
AGCAAGCACATGGCGC	ref_5365_RC	29	12	32	34	17	28	27	22	18	38
GAGGTCCTATGTATTT	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
GCCTTAACCTCCTCAG	ref_5365_RC	31	28	47	33	39	30	25	33	22	36
GTTCGGCTCCTAGAGG	ref_5365_RC	168	113	157	166	104	149	112	135	120	132
TATCCTACGAAAATTA	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
CGGCTTGAAGTCCGTA	ref_5365_RC	99	76	113	130	64	126	73	84	88	98
CTGGACAATTACTCGC	ref_5365_RC	13	19	14	6	25	3	19	1	12	6
AAAACGCCAACGTGCT	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
TCCGGCCGCCTAGGGC	ref_5365_RC	46	34	48	60	44	51	31	44	49	40
AGCCCTCGTTACGACC	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
ATGTTCCCCTCTGTAT	ref_5365_RC	8	6	17	11	10	15	13	7	8	11
AAACACGTAGGTGTGC	ref_5365_RC	16	15	25	15	13	12	9	12	14	3
ACAGTTCTGAATTCGA	ref_5365_RC	15	17	26	18	20	12	12	13	19	18
AGGTTGGTTTGCAAGA	ref_5365_RC	133	117	196	142	136	140	89	124	116	116
GGTGACGTTCGCTTTG	ref_5365_RC	90	78	101	64	77	83	73	81	86	86
AGTTGTGCCGCGTTCT	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
ACCTTGGCACTCGTGC	ref_5365_RC	46	31	55	42	37	37	42	49	46	40
ACTCGTGTGCGCTTCC	ref_5365_RC	8	4	5	13	9	4	8	8	3	7
GCGGGCAAGAGCTTTG	ref_5365_RC	146	113	163	133	105	150	114	138	107	106
CGTTCAGCTTAGTAGA	ref_5365_RC	43	35	53	61	35	34	30	33	37	52
ATTATATACTCCATGA	ref_5365_RC	16	11	9	5	5	5	10	4	2	4
GTATCAGTGTTCCGCC	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
TCCGATTGGTTTCTGA	ref_5365_RC	56	74	69	70	76	58	62	58	74	48
CTGTCTGTCCGACCCT	ref_5365_RC	42	34	52	41	30	27	26	34	41	32
CGTAATCATGTACCTA	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
TATACTCCCACCGGTA	ref_5365_RC	19	6	16	15	18	12	16	15	25	12
CACCTATTTTTTTTAC	ref_5365_RC	1	0	2	1	2	0	0	0	1	1
ACCAAGTCGCGACTCG	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
CACACGCTCAAGTTCT	ref_5365_RC	14	10	22	22	10	15	17	18	19	18
AGTGTTTAATGGATTT	ref_5365_RC	27	26	36	26	25	35	36	34	33	41
TGCGATGTATCATTGT	ref_5365_RC	57	59	109	79	69	82	64	61	51	60
ACCTTTTGCCAGTAAA	ref_5365_RC	87	47	95	92	56	89	68	66	56	64
CTAATGTTCTCCTATG	ref_5365_RC	119	97	145	93	111	106	111	103	100	111
TACTTAACGGGGTCTT	ref_5365_RC	28	16	36	47	36	35	34	19	21	26
CTTACGCATCGTCTAT	ref_5365_RC	74	52	89	93	56	87	64	57	70	63
TAGTTAACGAGTTTCT	ref_5365_RC	40	24	37	33	28	32	33	47	20	35
TTTCGGCTCACGGTCA	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
CGTCAGCGAATTTCGC	ref_5365_RC	25	37	40	33	44	34	45	35	41	31
ATCTAATATACAATTA	ref_5365_RC	17	12	27	17	17	15	11	13	20	21
GCGCGTCGGGAGATAT	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
ATCATATTCGTGAGTC	ref_5365_RC	44	37	50	45	32	35	33	33	34	31
CCCTAATCTGGTTCAT	ref_5365_RC	0	0	0	0	0	0	0	0	0	0
ACAGTCACGTGTTTGA	ref_5365_RC	28	35	37	30	34	23	37	39	36	43
AGTACCACTTCATTGG	ref_5948_new	40	41	54	47	31	31	43	35	28	39
ACCCCGATTCATGGAT	ref_5948_new	5	9	2	7	7	4	9	1	7	0
GATCTCACCTCGTCGT	ref_5948_new	40	37	31	33	23	27	40	24	31	25
AGCCGACTTTACGACT	ref_5948_new	0	0	0	0	0	0	0	0	0	0
GGACTCACAGTTTTTA	ref_5948_new	73	69	116	75	83	93	75	55	57	82
TAGGACTAACGTGAAA	ref_5948_new	0	0	0	0	0	0	0	0	0	0
CGCGTATAAACCTTAC	ref_5948_new	37	31	39	43	32	34	33	38	47	43
GGTTACCTAGCTCACA	ref_5948_new	33	44	47	29	42	32	27	41	38	26
AATTGAATCTATTTTA	ref_5948_new	66	57	81	71	70	88	80	75	56	71
CAGCTACAATATACAT	ref_5948_new	52	111	98	62	100	62	93	85	75	65
CGTGGTCTTATGTTAT	alt_5948_new	18	23	14	13	25	22	28	16	18	6
GTAGTACGGTGCAGAT	ref_5948_new	16	5	13	9	11	5	9	3	3	5
GTATGCCTCTATGTTT	ref_5948_new	38	28	45	23	33	22	31	28	34	36
CATAGGCGCTTCTGGC	ref_5948_new	0	0	0	0	0	0	0	0	0	0
TCGTTCTTATTTCGTA	ref_5948_new	160	136	225	185	174	178	167	199	165	152
ACACAGCCGGGCGTGT	ref_5948_new	0	0	0	0	0	0	0	0	0	0
GTTGACTCATTCCTAC	ref_5948_new	47	53	55	38	49	34	43	35	47	36
ATGCTTCCGATCGGCA	ref_5948_new	8	14	12	8	15	21	15	10	11	14
TTATAACGTTACCATT	ref_5948_new	15	11	10	17	10	13	16	12	14	16
CATGTACACCCTAATA	ref_5948_new	3	4	7	2	3	3	1	2	5	2
TAAAGGATGAATGACT	ref_5948_new	4	2	4	1	2	2	5	1	3	1
ATCCTTTGTATGCTTT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
ACGGGACTTTTATTGA	ref_5948_new	0	0	0	0	0	0	0	0	0	0
TCAGTCAACTTTGCAA	ref_5948_new	0	0	0	0	0	0	0	0	0	0
GGTGTCTTGTAACATA	ref_5948_new	2	4	17	8	3	8	10	7	10	10
TTGCTCGTTTAATAAC	alt_5948_new	139	116	163	133	112	132	108	134	139	118
ATATCAGTAGAATTGG	ref_5948_new	8	10	9	10	11	6	9	6	9	1
AAGATTCGAGACAAGT	ref_5948_new	0	0	0	0	0	0	0	0	0	0
CATGTTGTAACGGACA	ref_5948_new	6	7	8	11	10	9	7	7	8	7
GGAACCCGCGTATTTG	ref_5948_new	0	0	0	0	0	0	0	0	0	0
CACGTTGATGAGTTCT	ref_5948_new	25	36	58	35	49	39	49	49	56	26
TTTGTAGTCCATTATT	ref_5948_new	0	0	0	0	0	0	0	0	0	0
TATCACAGCCATGACC	ref_5948_new	22	20	37	28	28	21	22	33	24	26
CACCCGTGCGAATGGC	ref_5948_new	34	47	58	53	34	46	41	39	41	35
TAGTGAACTCGTTTAT	ref_5948_new	95	80	114	106	86	88	107	85	105	75
GTTGTTTGTTCTATCC	ref_5948_new	0	0	0	0	0	0	0	0	0	0
GCATGTATCCACACGA	ref_5948_new	0	0	0	0	0	0	0	0	0	0
TTGTTATGACGGCCAC	ref_5948_new	0	0	0	0	0	0	0	0	0	0
CACAACTCTCGGTAAA	ref_5948_new	17	23	29	23	21	33	16	37	18	25
TAGAAGCAGTGCTTGT	ref_5948_new	143	164	150	154	158	151	158	138	185	123
ATGCGTTCCTCTCTGG	ref_5948_new	19	14	26	14	12	29	24	20	19	12
CGAGTGATATCTGTGG	ref_5948_new	31	31	37	22	30	26	33	42	37	36
AGTGGCGAGTCAAGGG	ref_5948_new	29	36	44	46	28	39	36	28	36	30
AGATCACGCTATAAAT	ref_5948_new	0	0	0	0	0	0	0	0	0	0
ATCCTTACTTGCCCGC	ref_5948_new	46	48	51	56	44	48	49	52	76	37
AATGGCCAGTAAAGTA	ref_5948_new	9	2	15	7	6	12	10	10	12	13
TGATACAGTACCTAGC	ref_5948_new	10	28	25	22	19	10	21	15	27	18
CCCCAAACTAACACCT	ref_5948_new	75	50	73	73	68	50	60	57	91	49
GCAGAGCGCCCACCTT	ref_5948_new	168	149	212	143	148	138	140	157	168	147
CCCCTGCATTTATGGG	ref_5948_new	12	15	11	9	13	11	18	3	16	10
CAGGTATCCCGATGCT	ref_5948_new	34	43	45	55	38	44	52	33	43	28
CTCCGTTTGTTTATTG	ref_5948_new	23	27	35	30	24	25	28	15	35	34
CGTTGGGTCTCAGGCT	ref_5948_new	41	36	39	28	31	29	26	34	22	23
AGCGCTTTTAGGTATT	ref_5948_new	25	23	21	22	18	22	19	21	21	19
TAATTCTTCCGTCTCC	ref_5948_new	23	17	38	33	22	21	15	20	17	19
GCCGTATGGGCTGCTG	ref_5948_new	3	4	7	5	6	10	1	1	3	4
CTCTTCCACCTTTTGA	ref_5948_new	0	0	0	0	0	0	0	0	0	0
ACCCTGTTTCAGCGTG	ref_5948_new	11	7	6	6	4	4	11	3	3	14
CTGCATCCGATGCCTA	ref_5948_new	0	0	0	0	0	0	0	0	0	0
ATTCGTTAGCGGACCA	ref_5948_new	17	8	20	18	14	9	17	16	23	16
ACGCCCGTACTCCATC	ref_5948_new	5	7	18	10	17	11	9	20	11	10
TGTTTGTTAGCCCCAT	ref_5948_new	19	15	14	17	20	13	22	7	11	21
CCGCCGAAATCGTATT	ref_5948_new	77	76	83	85	84	95	76	60	72	74
ACACAGCCGGGTCTGT	ref_5948_new	4	2	6	2	4	1	6	1	3	2
CCATGTGGGTGTTCGC	ref_5948_new	0	1	2	5	0	1	2	1	0	1
GGTGACTCCGCAACTT	ref_5948_new	0	0	0	0	0	0	0	0	0	0
TATTTCGTAAAGTTAC	alt_5316_fdr	42	32	57	31	47	37	27	38	35	46
AGCGATATCATCCCTA	alt_5316_fdr	15	5	26	16	22	8	6	15	17	16
AACCAATGCGGGATAT	alt_5316_fdr	39	17	46	22	23	35	9	22	13	29
TCTAGCGATTGGATGG	alt_5316_fdr	16	22	20	14	13	22	19	21	13	12
AATGAGCCAAGATGGC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGCATGCCAACAA	alt_5316_fdr	13	10	12	7	7	13	8	6	6	6
GTTCTAAAATCCAATA	alt_5316_fdr	19	17	34	17	8	15	12	25	12	20
TTTGTCTTACCTTTCT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTTAGACTCCCCC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GACGGTAGTGCGTTTG	alt_5316_fdr	30	12	27	22	19	28	17	19	14	13
GGTGAATATATTTTTG	alt_5316_fdr	48	34	66	59	47	70	47	57	50	55
ACGTTGTCGCACTTCA	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GGGCGACGTTGCAGGT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GATGCAATCTGCGGTA	alt_5316_fdr	13	11	10	24	6	12	6	9	6	13
GCAACTATTAATATGT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CACGACACGGAATAAG	alt_5316_fdr	20	12	41	16	19	21	14	24	17	23
ACCAACGCACTCAACG	alt_5316_fdr	16	12	17	24	18	16	16	11	13	5
GTGTGTTCTTTTTGTA	alt_5316_fdr	170	97	190	145	89	151	105	149	137	159
AGGTCCCCTTGACCTT	alt_5316_fdr	81	38	56	45	43	52	48	51	52	40
GTCGTGGCGGGTGCCC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GTTACCGAAGCAAGGT	alt_5316_fdr	48	30	40	42	31	37	26	43	25	52
GCGCAAGGTGATAAGG	alt_5316_fdr	142	85	135	101	78	119	82	128	88	119
TCTAATCAGATCGCAA	alt_5316_fdr	15	15	15	9	5	8	16	13	17	11
CTCAATGTTTCTGAGC	alt_5316_fdr	25	19	37	11	35	23	18	27	19	20
GGGTGTAAAGGGTCTC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGCTACTATGTACACT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TAAGACGTTCGCAGGG	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TGAATTAGTTCGCCCT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
ACGATGCGGGCAAAAA	alt_5316_fdr	2	10	12	2	3	3	6	3	2	2
TCTTTCTCATTGTTTA	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
ATTTATAGGGATTCAT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCTCTTGTTTGGA	alt_5316_fdr	68	25	64	37	46	56	33	52	38	43
TTGATCACGGTTCTCG	alt_5316_fdr	21	15	30	22	12	23	14	21	18	19
TGGATGAGGGCCTTCG	alt_5316_fdr	59	52	74	45	49	68	47	55	54	54
CGGTAATCGTTATGTC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTATTTCTGTCGT	alt_5316_fdr	198	100	164	130	83	145	109	127	103	141
TATGTGACGTTTACTT	alt_5316_fdr	48	36	60	49	46	55	37	52	28	32
AAGTTGGAGTCGATTT	alt_5316_fdr	43	19	27	20	18	35	27	20	23	27
TTTTACTGTAGCGATC	alt_5316_fdr	6	9	4	10	2	14	6	6	11	9
TGCTTATTTGGAACTT	alt_5316_fdr	8	13	19	6	10	10	8	14	7	12
CGTTCGTTCAGTGTAA	alt_5316_fdr	21	8	25	11	11	12	20	22	10	21
TGCACAGACCAGCGCG	alt_5316_fdr	13	9	11	6	7	5	9	10	9	11
CTATCTAGCGGGACGT	alt_5316_fdr	27	17	38	16	15	18	19	32	17	17
GACATGTGGGTCGAAT	alt_5316_fdr	54	34	67	30	30	50	35	44	28	38
GAGGCCTGCATTAATC	alt_5316_fdr	139	75	174	107	54	159	63	106	90	97
TTTTTGGTCGCCGCTC	alt_5316_fdr	18	10	35	22	13	25	16	17	20	16
TTCTCCCTGCGAATGT	alt_5316_fdr	10	1	4	7	9	6	6	0	8	5
TCATACAATAGGGTAT	alt_5316_fdr	93	76	102	86	59	78	74	83	63	76
AGTCAGTTTCATGTAC	alt_5316_fdr	12	21	7	10	18	12	9	8	24	7
TAACGCGGCGGGGCGC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GGCACAGGATTATTTA	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
AATTAGGTCGATCAGC	alt_5316_fdr	262	149	293	203	130	278	169	235	181	240
TGTCCTGTAATTGCTA	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GGGAAGGGATGCCAGG	alt_5316_fdr	47	34	63	50	42	57	39	60	26	54
TGTGGGCAAGCCGTAC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAGCAATGCGATG	alt_5316_fdr	6	8	11	8	10	12	3	4	6	5
CTGATCTCGTTATGAG	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CGCTTTTGTTTCCCGA	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCGGACTGCGGC	alt_5316_fdr	14	2	8	4	1	1	2	5	3	4
TCCTCAGGAGTATTTC	alt_5316_fdr	3	0	3	1	1	3	4	1	1	2
TATACTTACCGTGCTC	alt_5316_fdr	60	55	55	36	34	68	39	46	61	40
GTCCTGGAACCTCACT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
AAGAACAACTTCGTGC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGCGGACTAGGGA	alt_5316_fdr	9	9	13	4	17	13	25	14	14	8
TCTTGCGAATAGATTG	alt_5316_fdr	99	132	114	102	154	97	166	107	155	93
GCTGGAGACAGGCATC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CATAATTTCGCGCCCG	alt_5316_fdr	31	13	33	29	19	18	15	20	21	23
TAGGGATATTCTATTG	alt_5316_fdr	69	51	81	42	41	60	25	48	37	59
TACGGGACCACTATCT	alt_5316_fdr	82	36	78	65	23	49	41	39	36	50
TTATGATCTCTTCCGC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
ACTATTTCGCAGCAGG	alt_5316_fdr	59	44	72	44	41	61	36	49	55	42
TATGCTGGCAGGTCGA	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGTACATTGCTCT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTAGCCATAGTT	alt_5316_fdr	47	36	68	43	38	27	36	51	35	43
GTAAGGTGACTTAATA	alt_5316_fdr	17	7	27	15	9	16	8	22	16	22
CAGTGCGAAGCGAGTC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TGAAATTGCCTTGGTA	alt_5316_fdr	22	26	14	20	18	17	19	7	11	28
TAAGTGCTCTGCGAGG	alt_5316_fdr	4	3	6	5	4	6	5	8	1	1
CCCGGGTGATAGCTGT	alt_5316_fdr	10	1	6	3	6	3	4	6	7	8
TCTTAATTATATCTGT	alt_5316_fdr	40	25	51	26	32	43	24	43	17	41
ACGTGTCGGTCCGGTT	alt_5316_fdr	48	29	62	34	23	41	28	45	31	44
GTAGGTCTCGATGCGG	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
ACAACTGACATCCGGC	alt_5316_fdr	102	67	111	96	77	87	57	96	67	113
CAGAAAATGAATTCGG	alt_5316_fdr	21	31	32	23	18	16	29	21	22	17
TTTTTGTCGTTATTCC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CCCTATCCCACTCTTT	alt_5316_fdr	229	140	256	198	176	208	172	199	157	195
TGCCGAATATACCTGG	alt_5316_fdr	11	18	16	13	9	18	23	21	16	21
CGTATTCTATTCGTTT	alt_5316_fdr	12	9	10	11	10	15	3	7	10	11
GGGTTCTGTAACAGGG	alt_5316_fdr	44	26	60	29	34	30	20	34	30	32
TTATAAGTCCCGGAGG	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTCGCCAAGCAAC	alt_5316_fdr	34	32	44	36	19	21	24	30	23	24
CGGTGGCAGCTTTACG	alt_5316_fdr	58	39	71	65	47	69	35	50	41	51
AACTTGTTCCCGACCG	alt_5316_fdr	57	60	83	54	54	61	44	62	65	51
TATCGCCTTTGTAGTG	alt_5316_fdr	40	20	41	28	28	38	26	24	17	32
GGCTCTCCTTATGGAT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGGGGCTACTAGA	alt_5316_fdr	81	61	106	70	70	71	69	74	101	73
GGTCTTTAAACACCAT	alt_5316_fdr	47	27	45	24	14	40	20	31	21	41
CTACCCTGTTCATGCG	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTATAATTATGTC	alt_5316_fdr	315	190	320	248	198	273	171	228	212	258
GGTCTTATATAGGTTA	alt_5316_fdr	2	1	4	3	2	1	3	3	2	1
GGGTATGGTAAGATAG	alt_5316_fdr	11	9	18	14	12	18	9	11	13	14
TCGGACCTTCTTACAC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CACGCATCTGGGGAAC	alt_5316_fdr	56	35	66	39	27	52	30	47	37	56
TTATTGTGACAGGGGC	alt_5316_fdr	24	20	40	20	11	26	21	25	16	31
TCCTTGTGCTTCCGCC	alt_5316_fdr	9	6	9	8	9	21	10	12	8	6
TGTTGAGAATAAGCTG	alt_5316_fdr	34	26	31	23	17	38	32	28	24	23
GAATTTAGCGTCCGCT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CCCACGCTCACTTAAG	alt_5316_fdr	17	8	16	10	9	18	11	18	9	13
TGATCCTTGTGTAGCT	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTCCAAGCCTTCA	alt_5316_fdr	13	9	18	6	10	13	9	7	14	9
CTGGTAGCTTATTTAC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
TATTCATACCTGCTCC	alt_5316_fdr	0	0	0	0	0	0	0	0	0	0
AGCGCCAAGTGCTGTT	alt_3406_reverse	59	54	96	61	53	68	71	56	58	62
TGCACCCCCTCAAATC	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
CACACCTTAAACCGAG	alt_3406_reverse	2	6	4	4	2	5	2	1	5	8
TAACGGCCACCCGCTT	alt_3406_reverse	1	5	5	5	3	5	3	5	1	3
CAGAGAGCTTAAGATG	alt_3406_reverse	46	38	63	45	44	52	60	57	57	52
CCCTTATTCTGCCCTC	alt_3406_reverse	323	375	403	394	421	306	419	367	409	323
TTCTCTGTCCCGTCTT	alt_3406_reverse	0	3	3	4	4	3	4	6	2	1
CAGCCTAATACTTTTC	alt_3406_reverse	43	85	93	88	80	66	83	45	99	59
ATATGCTCGGCCGGAT	alt_3406_reverse	14	19	35	22	31	30	34	27	24	24
TTCAGGGGTGTTCTGG	alt_3406_reverse	23	16	38	20	21	24	27	15	26	30
CTCTCATGCCTTGTGT	alt_3406_reverse	63	56	80	49	52	55	45	37	45	55
CCAGGTACATAGAGCC	alt_3406_reverse	16	21	12	19	48	11	26	13	32	12
GCTGCTGTCTTCGACT	alt_3406_reverse	8	8	10	12	8	7	8	3	7	12
TACACATAAACTTTAT	alt_3406_reverse	216	187	293	228	192	202	211	210	208	172
TCATCACGGATATTAC	alt_3406_reverse	79	73	95	95	99	61	95	71	88	62
GAACATGAGGATAGTG	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAGGTGAAGAAAT	alt_3406_reverse	9	6	15	6	9	6	7	6	16	16
CCATTATTCTGCCCTC	alt_3406_reverse	0	0	0	0	0	1	0	1	0	0
TTTTAGGTTTATGTAC	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
GCGGCAACCGTTGGAA	alt_3406_reverse	15	13	26	15	21	21	41	17	17	14
GGAACGAACAATGTCA	alt_3406_reverse	19	25	33	28	32	31	33	18	34	27
GACGGTCTTGCGGTAG	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
TTCACCGTCTCTTTTC	alt_3406_reverse	25	27	30	26	27	32	45	28	22	20
CGGTTGTCATAACGCT	alt_3406_reverse	4	2	6	6	3	3	10	4	1	4
TTAAGGGAAATGGTCA	alt_3406_reverse	28	18	38	29	38	26	20	24	31	25
AAGAGACACGGCGTGA	alt_3406_reverse	15	12	13	15	13	13	15	12	20	6
GGTCGTTCGTTTTATA	alt_3406_reverse	182	178	221	175	174	196	181	149	193	145
GTTAGCGGGACCTGAA	alt_3406_reverse	11	8	12	6	15	10	8	15	14	9
GCACGATTAAGTCGAG	alt_3406_reverse	0	1	0	1	3	0	3	0	1	0
CATTGGTATCGCCCTG	alt_3406_reverse	18	14	23	27	20	22	18	23	24	17
ACATCACGGATATTAC	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
CATTTTATATTCCCGC	alt_3406_reverse	16	38	40	26	31	31	22	15	21	28
GGTGAACAGCTGTCCT	alt_3406_reverse	15	12	16	9	34	12	24	6	9	23
AGGGTTATCATTCTGA	alt_3406_reverse	24	20	19	20	22	18	15	10	25	23
CTATGGCGAGCGTACA	alt_3406_reverse	30	19	30	21	19	17	13	26	19	13
GAACAGGCTGGAACTC	alt_3406_reverse	128	109	141	121	150	107	131	108	113	79
ATTATCCGCTTCAGTG	alt_3406_reverse	99	110	135	116	97	105	114	103	102	125
GGCCTAGTTACAAGTA	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
TATCATGTTTTCCCGT	alt_3406_reverse	161	132	213	209	134	155	136	148	127	121
ATATTGATTCTCTTTG	alt_3406_reverse	19	6	17	16	19	13	12	13	15	14
CACAGGCATGCTTAGG	alt_3406_reverse	3	5	8	2	9	5	11	1	7	5
TGGACGCCTACTCAAC	alt_3406_reverse	8	21	21	7	22	5	14	6	9	13
CATGGCATCTGTTTGA	alt_3406_reverse	10	16	9	6	10	4	29	11	14	3
CTGGGATCCTGTTAGC	alt_3406_reverse	50	41	35	41	46	35	50	33	61	42
CAATGAGGCCCGTTGA	alt_3406_reverse	18	9	12	14	10	14	9	9	11	10
AACGTTCCGGATTGTG	alt_3406_reverse	7	4	13	5	6	13	4	10	8	6
ACTCGGAGGTTGCCAA	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
GACCGTTGAATAAATG	alt_3406_reverse	16	10	15	21	11	12	14	14	12	12
GTTTATTGTTTTTTTT	alt_3406_reverse	33	27	32	34	20	26	21	18	28	13
CACTCTTATTTTAGAT	alt_3406_reverse	20	16	16	25	23	23	26	21	22	8
TTCATCTTCCGGTTCT	alt_3406_reverse	55	51	88	66	48	64	45	66	43	63
ATTCGAATGCGATGTT	alt_3406_reverse	52	38	38	59	43	51	44	41	63	46
TTCTTTGCTGTGGTCT	alt_3406_reverse	53	30	56	56	57	57	62	50	54	44
GTCAACTATCGCCCTA	alt_3406_reverse	4	6	6	0	6	4	7	3	1	3
TTCAGGGCTCCTACTT	alt_3406_reverse	26	9	30	22	9	22	15	14	19	8
GTCGCGCCCGCTGCTG	alt_3406_reverse	29	37	57	45	23	38	43	27	29	25
CGTGCTGATCGGATTC	alt_3406_reverse	19	35	30	22	15	20	24	20	26	24
GTGGCATTGACGATAT	alt_3406_reverse	62	59	59	47	46	54	41	57	41	48
ACATCGGGTATTCGGG	alt_3406_reverse	109	114	149	112	112	96	119	107	125	124
AAATAGAGTTACCGGG	alt_3406_reverse	24	15	19	16	15	20	25	32	20	14
TTGCCCATAACCGTCA	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCTTGTACCAGGT	alt_3406_reverse	68	89	99	79	78	81	110	77	99	63
AGATGTGCCGACAGTG	alt_3406_reverse	74	54	67	58	95	43	67	33	71	41
TATGCGGCTCGTTACG	alt_3406_reverse	1	1	0	1	4	0	1	0	1	0
AGGTCCCATTAGAAAT	alt_3406_reverse	100	75	102	92	93	78	91	69	81	74
TTGATCATCCACCCCC	alt_3406_reverse	13	11	10	13	6	13	13	13	6	9
TATATTGGCGAGGGTG	alt_3406_reverse	22	26	23	25	18	31	16	21	23	20
ATGTTACTAGCTTTCT	alt_3406_reverse	13	10	13	15	14	15	15	9	14	10
CTCCTGGGTACCTTTA	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGCTGCGTGTGCT	alt_3406_reverse	21	16	24	12	15	29	13	12	23	25
GATAGAAATCAATTGC	alt_3406_reverse	47	49	56	58	57	35	61	48	57	41
TCCTTGTGCTGATTTT	alt_3406_reverse	10	17	22	17	11	30	13	16	12	12
AAAGCGGCCGCAGCTA	alt_3406_reverse	5	10	6	10	13	9	4	6	3	13
GAGCTCGATAAGAACA	alt_3406_reverse	150	125	154	134	95	124	134	123	130	114
TGGTTCATGGTTGCCA	alt_3406_reverse	22	15	30	21	19	30	24	19	14	24
TCATCCTTCTACGCTT	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCGTAAGCTTTTC	alt_3406_reverse	29	24	41	35	25	32	26	31	31	26
GCAACCAACTGTAATC	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTGGTTATGTCCT	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCACGTTGTTACG	alt_3406_reverse	43	52	66	60	53	50	46	64	71	45
GTCTCACAATTTGCCC	alt_3406_reverse	25	37	23	20	31	23	48	22	39	25
CCCTTACGTTAAGGCC	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
CGTCAGTGCGAATTAA	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
TTGAATCGCTAATGGT	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
AGCAAGCTATCGATTG	alt_3406_reverse	20	24	24	15	13	22	14	19	22	26
GACCGGTGACCATGGA	alt_3406_reverse	2	5	2	3	7	1	5	0	5	1
GTTAAGAATTAGATCT	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAAACACCGCCAT	alt_3406_reverse	13	8	3	16	7	8	9	7	5	11
ACGGAACGGCGTTTCG	alt_3406_reverse	18	14	30	16	23	25	13	25	15	28
CGTTCTGAGTACCCAA	alt_3406_reverse	187	179	212	180	165	167	172	163	228	135
CCGTTGGTCGGTGCGA	alt_3406_reverse	4	6	7	7	8	7	7	7	5	4
ACAGCAAATTTTAGGT	alt_3406_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTTTCGTCGCCAG	alt_3406_reverse	71	97	103	86	77	74	94	96	100	61
GGATAGGTTGTCTCGG	ref_5786_new	65	118	60	46	108	63	88	61	115	49
GGAGTCGTACGTAAAA	ref_5786_new	0	0	0	0	0	0	0	0	0	0
AACATTTGCTACCCAG	ref_5786_new	24	52	36	51	50	23	56	31	68	32
GATTTGCAATTCCCGA	ref_5786_new	0	0	0	0	0	0	0	0	0	0
TGTAATCACGGCCAGA	ref_5786_new	39	77	47	37	83	43	85	45	60	30
TGCGTTCAGTGGGGGG	ref_5786_new	144	214	191	142	263	168	239	149	243	156
CTGGAAGACCACCTGG	ref_5786_new	8	19	11	12	31	10	22	14	24	9
TTTAAGACCACGAATT	ref_5786_new	0	0	0	0	0	0	0	0	0	0
ACTTCCGCGGCCTCCC	ref_5786_new	9	11	8	9	17	2	17	2	18	4
TATTGTCACCCGGTAG	ref_5786_new	0	3	6	2	3	3	2	2	1	1
ATTTGGTCAGGCTATC	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GCATGCACTTACAGCC	ref_5786_new	0	0	0	0	0	0	0	0	0	0
TTAACTTGGAAGATCG	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GCGAGATACATTTACA	ref_5786_new	4	8	7	2	10	4	9	4	9	7
TCCCGATACCGTGCAT	ref_5786_new	0	0	0	0	0	0	0	0	0	0
CTTATGTGCTTCAGAG	ref_5786_new	0	4	2	2	4	2	7	0	2	2
CGGTATTCTAGTTGTC	ref_5786_new	47	71	61	46	90	33	98	35	73	47
GTTTTGTCCGAGGGTT	ref_5786_new	26	21	26	15	19	15	27	23	30	18
TTTAGTGGTGTTCTCA	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GTGCTCTGCTTTCACC	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GCCCAGTCATGCCCTA	ref_5786_new	0	0	0	0	0	0	0	0	0	0
AGTGTTCATTACGTGC	ref_5786_new	3	8	3	4	7	4	8	3	9	3
TTACCCCGGCCCGTCG	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GAGTCCGTGTGGCCTT	ref_5786_new	2	6	4	1	0	2	4	3	2	1
ACACTTCGTAGAGCAG	ref_5786_new	20	51	42	27	55	21	62	35	46	32
GTGGCATTGTGGTTAT	ref_5786_new	24	40	29	30	51	27	54	24	35	19
CCTCACCGCAGCTCAG	ref_5786_new	0	0	0	0	0	0	0	0	0	0
CCCACTATATTGATTT	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GGCAATCCAAACGGTG	ref_5786_new	0	0	0	0	0	0	0	0	0	0
ACGACCTCGCAACGAA	ref_5786_new	28	46	32	28	42	24	47	29	49	33
CTTCCTTTGGGACATG	ref_5786_new	11	13	5	8	33	15	19	16	27	10
AGGGCGTAAGGGAACG	ref_5786_new	0	0	0	0	0	0	0	0	0	0
TTCACTTTAGCTTGTA	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GCCTTCCGTCCGGAAT	ref_5786_new	10	12	12	7	8	4	10	5	11	7
TCGTTTTGCAGGTATC	ref_5786_new	10	19	5	10	15	8	13	9	17	12
AGGTAGGGGCTCGTTT	ref_5786_new	34	49	46	26	59	30	87	25	59	29
AAGTGTTTTCCTAACA	ref_5786_new	11	17	21	17	26	27	22	20	32	23
ATAGCTCGGTGTATCC	ref_5786_new	13	22	23	11	18	20	34	21	17	13
GTCTACAAGCTTTGAC	ref_5786_new	12	20	7	16	19	8	34	15	16	11
GGGCCGCATACCTATA	ref_5786_new	5	12	5	6	10	6	19	4	8	1
TGGTCCGCGCATGTGT	ref_5786_new	32	52	49	47	45	31	36	30	43	32
CTGAATGGTACAATAA	ref_5786_new	8	15	10	13	17	8	22	7	21	13
AGTATTATGGAACATC	ref_5786_new	43	59	41	33	54	27	65	39	56	26
AAGAGCTTTATATCAG	ref_5786_new	9	22	18	12	36	14	37	15	35	14
TGCCTTCTAGACCAAT	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GGCATGATACAAATTA	ref_5786_new	43	71	47	37	60	38	53	31	68	38
CCATGTCCGTGGCTAC	ref_5786_new	15	57	7	7	94	8	60	15	65	11
CTTGTCCTCTCACCGT	ref_5786_new	3	4	4	4	10	4	10	6	5	2
GCAACTCCCTTTGCTT	ref_5786_new	0	0	0	0	0	0	0	0	0	0
CGCATGGGCCGAAGAG	ref_5786_new	43	65	48	43	51	49	64	42	58	34
CACATTACTGTTTAGT	ref_5786_new	31	50	36	28	40	42	42	34	41	28
AAGACAGGGTCTTCAT	ref_5786_new	0	0	0	0	0	0	0	0	0	0
ATAGATTATATGCCCG	ref_5786_new	0	0	0	0	0	0	0	0	0	0
TTAGTACCTTGCGTAC	ref_5786_new	11	25	11	4	25	12	31	5	24	10
TGCGTTCAGTGGGGGC	ref_5786_new	0	0	0	0	0	0	0	0	0	0
GGTATTAGAGATCAGT	ref_5786_new	4	6	3	11	8	2	8	3	11	10
GCTGGTCGTTGTAGCA	alt_3187_fdr	156	62	164	118	69	122	61	116	82	117
AACGCTCAATGATATT	alt_3187_fdr	53	17	41	33	20	20	25	42	14	34
CATATGCTGGACATTT	alt_3187_fdr	224	112	264	182	133	239	109	204	103	191
AACATTTGACATCTGA	alt_3187_fdr	94	46	103	70	43	66	58	73	57	85
GGCATTGGGTCATATG	alt_3187_fdr	56	15	41	46	38	38	28	46	14	54
TGCTCGCGGAATGCAG	alt_3187_fdr	90	39	102	67	36	76	42	61	37	82
TGCGATGATCTCGGCT	alt_3187_fdr	26	2	16	17	13	19	10	17	5	22
CGTGATGGCGAATGTT	alt_3187_fdr	37	9	56	31	21	62	28	39	28	30
GGGGCACGGTGCGGCC	alt_3187_fdr	101	36	119	68	42	70	48	70	51	76
GTTACATGATTTCCCA	alt_3187_fdr	114	57	135	92	70	125	55	104	61	84
GAGGGGTTTACCAATT	alt_3187_fdr	102	54	74	82	53	76	49	72	48	84
TAAGTGTATTGTGTTT	alt_3187_fdr	215	124	233	147	99	205	125	182	156	198
CGTAAGTGTTCGGTTC	alt_3187_fdr	22	12	34	25	11	28	10	23	20	22
TTCCACAATTGCTTTT	alt_3187_fdr	81	54	109	58	52	80	38	75	53	62
CGCGTTACTTTTCGGC	alt_3187_fdr	1117	566	1183	771	555	964	549	992	573	931
ACTGGAAAGTCCTTCT	alt_3187_fdr	55	19	56	49	29	51	28	51	19	52
GTAAAGACCGGCGCCC	alt_3187_fdr	295	136	364	250	149	284	146	303	161	238
ATAATGCTGTCAATCC	alt_3187_fdr	60	13	50	25	20	50	24	34	28	32
CTCTTCGCGATATTTT	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCCAGTCTTAATT	alt_3187_fdr	33	35	39	39	28	22	30	44	30	36
AGCCGCGGGACTTCCA	alt_3187_fdr	83	42	87	53	48	81	50	66	43	74
AGGCATGCACAGTCCT	alt_3187_fdr	28	9	42	17	8	29	9	21	13	19
TGCGATCCGTCAGCTG	alt_3187_fdr	96	36	106	73	44	77	46	76	44	94
GCGCCTTTTTAACAAC	alt_3187_fdr	124	59	136	93	44	126	66	113	61	106
ACCGGACGTAGTGAAG	alt_3187_fdr	64	99	69	43	97	64	112	56	103	58
AGCGGATCGGAGTCGG	alt_3187_fdr	5	9	3	6	4	11	5	9	8	5
ATTTGGCTTCGTATTC	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TCTTGTCTCAGGACCA	alt_3187_fdr	85	32	57	49	40	54	37	55	33	76
CCGACGAAGCCTACCC	alt_3187_fdr	56	49	55	42	29	47	47	51	35	42
ATTTTTAAGGTTTTGC	alt_3187_fdr	200	97	223	154	73	170	98	150	112	144
GACATCCCTAATACTC	alt_3187_fdr	0	2	0	0	0	0	0	0	0	0
TTATCCATTCGTCCAG	alt_3187_fdr	123	53	145	90	58	75	56	100	61	108
GGTCCGTGCGTCTGCT	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TTAATTCACGCCATGT	alt_3187_fdr	80	42	96	50	30	73	50	65	41	61
ATGACAGCAATCGGCC	alt_3187_fdr	98	45	109	75	51	89	50	81	58	97
TACCCATCATAACCAT	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
CGTTATTGATTTTGTA	alt_3187_fdr	113	46	93	67	51	112	52	99	39	91
TAATACGGCCGTGCCC	alt_3187_fdr	50	28	59	45	19	49	12	42	18	45
CTCTGTATGGGGGCCC	alt_3187_fdr	16	10	26	13	10	24	10	11	8	15
TTTTCGCAGGCGCCTA	alt_3187_fdr	30	19	24	18	7	27	11	22	11	31
CAGGGGCGGATTCTTG	alt_3187_fdr	148	81	170	124	75	136	93	138	95	132
ATTTGAGTTGAGCTAC	alt_3187_fdr	96	50	114	82	39	83	41	76	41	80
CTATATTCATGGTATC	alt_3187_fdr	119	68	127	80	68	102	57	97	66	98
TATTAGACGAGGTCTG	alt_3187_fdr	74	25	67	47	34	58	36	57	32	36
TAGCGGCTATTGCGTG	alt_3187_fdr	10	5	7	5	4	5	4	3	5	8
CAGATTTACTAACTGC	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
GCGGGCGCCAGGGGGT	alt_3187_fdr	139	52	141	103	51	119	67	99	71	119
ATACGAATTAAGATCG	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
CTCACTGGTAGTACGT	alt_3187_fdr	9	12	15	17	10	15	6	8	9	18
ATTAATGGCATGTAAC	alt_3187_fdr	73	25	75	37	36	65	36	71	35	69
GTATATAATACACGCT	alt_3187_fdr	18	11	20	18	17	18	9	23	14	26
TCGTCTTAGGTACCCG	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
GCCCAATCTGATTAAA	alt_3187_fdr	36	45	39	27	64	30	54	28	49	33
CGAGCTACGCCTGGCC	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TTGTGTGAGTTTTGTC	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGACCACCAGACC	alt_3187_fdr	12	3	11	9	2	10	7	6	1	4
AATCCTTTGTACCTAG	alt_3187_fdr	21	11	25	19	9	16	13	16	8	22
TGACCCCCTTGCTTTT	alt_3187_fdr	88	32	74	44	18	80	39	62	26	53
AACACAAGCCTTTCTA	alt_3187_fdr	116	40	150	98	51	105	60	88	43	107
ACGCAGGGGTGAGTAT	alt_3187_fdr	304	124	332	253	116	278	116	267	133	276
CGTGAAAAATCTTTCT	alt_3187_fdr	18	10	17	18	12	11	16	11	12	12
CAGATTTTCTAACTGC	alt_3187_fdr	106	76	117	80	56	103	66	94	56	93
AGCCCTTCCAGCACTA	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCATGGTGCGTAA	alt_3187_fdr	3	3	1	3	5	3	1	2	6	3
TGCGATCGGTCCTTGA	alt_3187_fdr	24	6	34	32	19	16	22	25	15	42
GAACGAACAATACCAG	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
CAAGGTAGGCGATTGC	alt_3187_fdr	46	27	59	36	33	44	24	48	47	39
AGCGGTAGTCAAGCGT	alt_3187_fdr	39	23	53	30	24	36	25	41	28	34
CTCTACCGTCTGCACG	alt_3187_fdr	46	21	64	43	33	48	24	28	19	44
TCCCAGTTCCTTTTTT	alt_3187_fdr	4	3	5	2	2	4	6	3	5	2
GAACCAAGTGAGGCAA	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCAGATGTCTTCC	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TATGGCTACTTCAGGG	alt_3187_fdr	35	11	34	20	22	28	19	25	19	32
AGTTGTTGTAAGCTAT	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGCCGTCCCTATT	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
CATCAATTTTCTGAAC	alt_3187_fdr	43	14	36	25	11	26	23	20	15	37
GTTGTTGGTAGCTTCT	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTAAGGATTGTA	alt_3187_fdr	18	15	27	7	10	18	19	22	22	15
AACTGTTCAGCATAAA	alt_3187_fdr	84	49	77	67	51	64	44	53	35	66
ACTCTTTCTTTCATCG	alt_3187_fdr	103	63	157	112	51	80	68	99	55	114
CGGTTACATCATCTCC	alt_3187_fdr	97	29	92	79	28	86	35	71	33	94
CTTGCCCATCGACTGT	alt_3187_fdr	207	131	227	183	143	161	187	156	179	171
TCCACTTCTGATGTGT	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACGACGGGATAC	alt_3187_fdr	51	32	59	35	35	40	29	27	24	33
TTGAACGGTACGTATG	alt_3187_fdr	35	19	44	22	15	34	27	25	23	35
GTGCGCACTTGTAGGT	alt_3187_fdr	1	5	3	1	3	2	2	1	1	3
ACATGGCGTATTGCGG	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCGGTGGCTATTC	alt_3187_fdr	272	130	283	187	106	222	119	205	142	221
AGTATCGCGCAAAAAG	alt_3187_fdr	24	27	18	23	21	19	20	17	35	21
TCCAGATCAGCTTATA	alt_3187_fdr	65	27	79	42	21	52	37	43	41	51
CCTATGCTACGCTCCG	alt_3187_fdr	97	44	112	90	82	79	57	83	63	91
CGGTAACATCGTGTCA	alt_3187_fdr	23	9	20	19	12	18	7	25	8	20
GCGCAGCCGTGCACGG	alt_3187_fdr	0	0	0	0	0	0	0	0	0	0
CGGCAATTTGCGCGAT	alt_5900_new	26	55	32	17	36	17	64	23	43	23
CCCCAGTTATAGCATC	ref_5900_new	2	2	1	0	4	3	4	1	7	1
AGAGTTTCAAGCCGAA	ref_5900_new	43	101	41	39	76	39	83	40	97	33
CGCCTGGGACGGGAAT	ref_5900_new	25	47	25	27	61	32	56	19	48	14
CTTGACGGTCATCACC	ref_5900_new	54	107	44	32	96	46	92	46	118	34
TTTATGACTATACTGG	ref_5900_new	16	28	10	13	33	13	28	13	38	12
GCGCGTAGCATCTGAG	ref_5900_new	9	7	4	5	5	4	14	1	11	3
CCGAACTGCCAGTTCG	ref_5900_new	4	9	2	2	7	1	10	3	14	1
GTAAAGTACCCACGTG	ref_5900_new	102	163	106	78	169	101	175	82	200	89
ATGAGATTTTGTGGGC	ref_5900_new	15	31	24	5	26	15	27	9	32	14
TACCGTCGTAGAGCTA	ref_5900_new	16	39	22	20	30	21	22	18	26	20
GGTTTCCGGGCTACAC	ref_5900_new	0	0	0	0	0	0	0	0	0	0
CTGTGCCGCTATCTTA	ref_5900_new	5	19	7	6	11	4	12	5	14	1
TTATACTTCGCTTCCG	ref_5900_new	0	0	0	0	0	0	0	0	0	0
CAAATTTGCTGTAGTT	ref_5900_new	16	29	22	18	29	12	30	14	40	20
TTGAATGTTAGAGGCG	ref_5900_new	129	283	157	129	297	126	293	102	328	117
GCTTATAAGACCGGAT	ref_5900_new	111	218	108	101	219	112	207	82	211	65
TGTCTTGGAGGGGAAG	ref_5900_new	0	0	0	0	0	0	0	0	0	0
TGTAGCGGCAGCCCAC	ref_5900_new	26	25	34	22	44	36	44	14	32	17
GCTCACAGAATTGAGG	alt_5900_new	118	265	131	134	264	107	284	122	281	102
ATCACGACTCTGTGAC	ref_5900_new	10	29	21	18	29	14	28	16	10	10
ATACGACTGGCTCTCA	ref_5900_new	41	47	34	23	45	37	37	30	50	17
TTGGTTCTCGTGCGCG	ref_5900_new	90	151	83	70	187	101	193	61	193	75
AGCCAGAACTGCGATG	ref_5900_new	33	81	26	20	97	25	77	21	86	20
GGCATTCTGACTTGTT	ref_5900_new	21	38	17	18	29	14	37	11	34	22
TACCTTGGCTGTGTGC	ref_5900_new	7	26	17	8	41	6	25	20	32	14
CACTAAGTAGGCTGCA	ref_5900_new	22	39	28	24	42	23	37	22	58	25
CGTGAAACGTGTATTC	ref_5900_new	64	137	103	73	129	57	149	47	126	52
TAGTCATTCTGCGTAT	ref_5900_new	30	50	27	23	52	22	57	19	51	19
CCGTGTTTATAGTGTT	ref_5900_new	3	35	11	9	28	5	29	5	29	4
GTGCTTTTATACGGGG	ref_5900_new	0	0	0	0	0	0	0	0	0	0
TTTCCTGCTTTCGGTA	ref_5900_new	0	0	0	0	0	0	0	0	0	0
GCGTCGCGGCTGGAGA	ref_5900_new	37	55	59	37	69	45	82	32	56	34
AATGGCAACGGTTCGT	ref_5900_new	6	9	11	4	13	6	10	13	9	10
TTATATGGTCGTCCTG	ref_5900_new	8	15	10	3	20	10	25	6	18	5
ACGAAATATATTGATG	ref_5900_new	8	14	11	13	15	14	28	14	34	10
CAGCTTGAAGCCTTCC	ref_5900_new	0	0	0	0	0	0	0	0	0	0
CGTGTGCGCGCTCGCC	ref_5900_new	12	41	13	15	30	17	49	13	38	15
ACCCTGGTTGCTTCGA	alt_5900_new	28	42	19	17	33	12	41	16	34	15
GGCAACGCCTTTCGTG	ref_5900_new	7	26	15	6	17	12	11	16	17	4
TCGGTACGGTTCTAGA	ref_5900_new	0	0	0	0	0	0	0	0	0	0
CAGGACACGGTTTTTC	ref_5900_new	12	50	23	21	56	20	44	14	40	11
TCTATGCATTCTCCTA	ref_5900_new	64	113	76	59	124	45	121	36	136	39
TTTGCAACAACATCTG	ref_5900_new	0	0	0	0	0	0	0	0	0	0
TCTAAATGATCCTCTT	ref_5900_new	29	53	28	27	44	24	43	19	34	25
TTGATATTCAGAGCGC	ref_5900_new	14	34	18	21	31	18	35	13	28	19
TACCCCGTTAAGCATT	ref_5900_new	24	53	32	21	62	7	69	21	57	20
TTGCCATCGGGCACTG	ref_5900_new	4	15	14	8	18	7	25	8	21	6
GGTTCCCATTAAATTG	ref_5900_new	23	33	21	29	38	21	27	25	41	19
CGACCCGCCCCCTCAG	ref_5900_new	0	0	0	0	0	0	0	0	0	0
CCTTCGCCACCTGGGC	ref_5900_new	0	14	3	0	17	1	27	0	11	2
CAAATTTTATTGATTA	ref_5900_new	38	45	42	42	53	34	71	28	77	18
GAGTCTCTCTTTTGGG	ref_5900_new	0	2	2	3	0	1	0	0	3	2
TATGGTTTGGCGGATA	ref_5900_new	14	29	13	17	30	22	37	9	32	13
AGACTTCGTTTATTTT	ref_5900_new	0	0	0	0	0	0	0	0	0	0
TTCTTCCCATCGTGAG	ref_5900_new	6	17	13	8	15	9	23	5	16	7
ACCGCTTTCGGTCTGC	ref_5900_new	0	0	0	0	0	0	0	0	0	0
CAACAGTCGCAGGACG	ref_5900_new	0	0	0	0	0	0	0	0	0	0
CTGGGATGTGGGAATG	ref_5900_new	13	23	9	8	8	7	17	2	15	5
CCCATAATTCCCCTGT	ref_5900_new	28	38	27	26	25	12	43	17	33	13
CGCGCCCAGTGCTCGG	ref_5900_new	13	38	23	17	32	21	38	9	41	14
ATGATAACTTTGTCCG	alt_5900_new	0	0	0	0	0	0	0	0	0	0
TATTGCATGCATCTCT	ref_5900_new	4	2	2	1	3	2	7	1	1	2
TCTACAGACATTGCAT	ref_5900_new	0	0	0	0	0	0	0	0	0	0
TTCTGACTTATATGCG	ref_5900_new	0	0	0	0	0	0	0	0	0	0
TGGTTAGCAATCTGTT	ref_5900_new	19	33	22	23	43	17	46	18	41	18
GCTCGCTTGATAGTCG	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
AACTGTTTCTACGACT	alt_5198_reverse	194	99	243	201	101	153	92	194	132	168
GAATTTAAACTTAGTC	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
GTAAAACGGCCCTAGT	alt_5198_reverse	83	24	94	84	30	77	38	57	48	70
GTCACTCGCGATATTA	alt_5198_reverse	455	256	431	402	237	355	280	352	270	341
ATGGGCAGTTCCTTGC	alt_5198_reverse	31	14	42	27	23	28	22	29	26	32
GGGCTGGTCCCCACCT	alt_5198_reverse	18	13	36	29	9	25	13	20	12	14
TTTGCTGGAACGGTGC	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
CTCACATGTCCATTTG	alt_5198_reverse	30	16	43	38	12	26	21	31	32	29
GTCGTGGAAACAATCA	alt_5198_reverse	146	52	157	153	68	148	60	150	72	145
GACTATCTCTCTTGAT	alt_5198_reverse	151	62	185	143	56	116	58	120	52	109
CTTCGTAGGCTATTTG	alt_5198_reverse	54	31	92	69	30	55	33	46	31	47
AGACCATTCGTGCCTG	alt_5198_reverse	168	65	192	184	95	149	70	146	121	138
CCTCTTACCCTGACCT	alt_5198_reverse	37	53	46	50	36	26	57	39	36	39
AAAGCTCGTGACCCGT	alt_5198_reverse	90	47	119	93	40	89	47	86	54	99
CGTTAGCGTTTTCCAA	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
ACAATGCATGCGTCTA	alt_5198_reverse	47	41	88	49	32	64	41	54	29	35
AGACCATTCGTGCCCG	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
ATGGCACCAGTCAATG	alt_5198_reverse	11	8	14	13	5	13	9	13	9	16
GAAGCATATTTTTACG	alt_5198_reverse	42	24	27	47	14	37	23	26	27	23
CGACCCCGTGGCCCCG	alt_5198_reverse	9	9	17	12	1	12	4	11	8	11
TAATGTTGTAATGCAC	alt_5198_reverse	79	31	90	66	32	74	36	91	22	64
GCTGACTTTCCTCATG	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
CCCACATGTATGCTCT	alt_5198_reverse	4	7	7	8	2	2	7	5	8	3
GTTGTCTTGTGAGACA	alt_5198_reverse	95	55	126	111	64	98	77	97	76	107
GTTCATCGTGTTTGGC	alt_5198_reverse	8	3	4	3	1	2	0	4	3	7
AGGTGTATCTACGGTC	alt_5198_reverse	97	55	132	103	62	105	57	89	75	84
TAATAAGCATTTGTGG	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
AGACCCTTTTTTTTAA	alt_5198_reverse	152	90	176	145	122	143	103	114	109	113
CATGGTTTTTCCGGTA	alt_5198_reverse	48	35	41	54	33	48	38	37	26	48
TTTATTGTTTCGGCTT	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTTGTATAAAAA	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGTCTGGGAACCC	alt_5198_reverse	39	25	69	51	18	52	25	37	22	51
TCTTCCGTGGGAGGAA	alt_5198_reverse	76	36	71	53	30	62	33	54	39	55
TTATAGGCGAAGCTGT	alt_5198_reverse	88	44	123	116	59	87	64	113	61	107
TGTTTGGTTGGGAAGT	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
ACAATGTATGCCCAAT	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGATTCCAACCCG	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
TATACGACGATTAAAT	alt_5198_reverse	67	25	84	57	29	67	35	61	37	70
CTATCTCGGGTGTTGT	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
CATAAAAGCTTGACCA	alt_5198_reverse	10	4	24	8	5	8	4	14	5	9
AACGACAACGCACACG	alt_5198_reverse	52	30	73	52	25	33	32	56	23	47
TTATTCAACGTCAGAA	alt_5198_reverse	59	42	60	54	35	54	35	35	40	46
GGATTTTACGTGTGCA	alt_5198_reverse	17	7	8	8	6	9	10	9	8	7
GCATTATTTACACACT	alt_5198_reverse	28	20	34	35	11	28	24	40	18	22
TCCACTGCCTCTTTTC	alt_5198_reverse	23	7	21	13	8	30	12	12	11	17
TATGTGAGATTGGCTG	alt_5198_reverse	200	117	203	161	92	183	109	164	102	136
AGACCCTTTTTTTAAC	alt_5198_reverse	0	0	0	0	0	0	0	0	0	0
GGCAAATGCGTCTAAA	alt_5198_reverse	22	19	26	20	16	20	9	17	12	17
AAGGATTGTTAACGCA	alt_5198_reverse	47	22	58	40	33	31	21	40	20	40
CACACCGCGAGGCTAA	alt_5198_reverse	28	11	30	41	19	22	18	28	22	29
TTTACATCGAGCCAAT	alt_5198_reverse	0	2	1	2	0	1	1	3	0	1
GGTTCCCAGCGACTGA	alt_5198_reverse	130	62	166	128	49	133	67	126	68	127
TCGGACTAGAGTAGCT	alt_5198_reverse	23	8	16	29	15	33	20	23	17	26
TTGTTACGTTTGATCG	alt_5198_reverse	455	243	607	462	261	417	305	408	290	396
TCCTACAGCTTTTATT	alt_5198_reverse	225	107	264	250	98	216	126	186	128	180
TTTGGCCTGCGAATAT	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
CTACCTGGTAAAAACC	ref_1364_missing	15	19	15	3	17	11	26	13	15	6
TGCAAAAAAAGACTTA	ref_1364_missing	2	1	6	6	5	2	2	0	3	4
TTGTTTGTTCACGCAC	ref_1364_missing	76	109	68	87	93	79	96	75	100	60
CTAACATACAGAACAG	ref_1364_missing	8	7	14	10	16	7	10	7	24	7
TCTTAACGACTCTTCA	ref_1364_missing	20	26	19	15	19	22	24	12	15	21
AGATCTCAAAACATGG	ref_1364_missing	12	18	13	16	7	12	14	10	22	14
TTACGTATCGGCACCC	ref_1364_missing	81	99	94	97	103	75	102	61	117	85
GGACCTTTATATACAT	ref_1364_missing	36	70	47	41	76	40	71	29	84	54
AATTCGCTCTTTTTGG	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
CTCGTGGTCTTTCTGC	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
ATCCCTAATAATCCCA	ref_1364_missing	0	2	0	0	0	0	1	1	0	1
CGCGGTTGATCTCATC	ref_1364_missing	12	18	23	16	31	16	15	6	15	8
TATATACGTACTGAAC	ref_1364_missing	22	39	38	29	54	20	51	16	41	19
TGGCCCTGGACCTTGC	ref_1364_missing	13	22	8	10	22	9	27	10	20	12
GTTCTCTCGTCGGCTC	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
CCTCATCTTTGAGAGC	ref_1364_missing	15	15	12	15	14	13	15	10	16	15
TCTCCTCCGTTTCGAC	ref_1364_missing	4	7	4	1	9	4	5	1	7	1
TTCTGAAAATTCAAGT	ref_1364_missing	18	19	22	15	27	16	27	25	24	9
CAGGTTCCTCGTAGTG	ref_1364_missing	14	20	19	12	19	17	19	14	15	12
CAATGATGAGGGACGT	ref_1364_missing	65	88	63	84	106	56	115	55	88	70
TGCTCCTGTCGAGAGC	ref_1364_missing	5	7	6	10	3	4	8	3	9	2
GCTTGAGCTCTCCTCA	ref_1364_missing	6	10	14	6	10	5	14	4	9	3
CGGTTTTCTTGCGACA	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
AACCTTGTACTTGTCA	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
CGCTATCAGCGTATTT	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
ACGTTATGGTACCTAT	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
TTCTTTCACTCAACTT	ref_1364_missing	32	42	29	64	50	27	53	34	67	43
GGCTTTCGATCTAACA	ref_1364_missing	27	43	35	43	51	29	57	35	53	26
CTGATACCTACTGTGT	ref_1364_missing	35	70	28	34	49	30	70	30	46	23
GTAAACGAATGATATC	ref_1364_missing	84	95	85	75	136	74	114	67	129	89
AACCAATTTGATACAT	ref_1364_missing	30	49	31	33	50	33	65	38	54	33
TCTATTCGTTGTCCTA	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
AACGTGTCATAACAGA	ref_1364_missing	1	1	2	0	0	3	3	0	2	0
ACAGCCCCAATGTCTC	ref_1364_missing	5	14	7	4	15	5	28	3	15	3
GGTCTCGGCAATTAGC	ref_1364_missing	19	29	32	24	35	18	39	23	31	26
ATACGGATCTTCGTTG	ref_1364_missing	179	224	237	156	217	192	245	175	246	165
CCTTTTAGTCATAATT	ref_1364_missing	14	43	19	16	27	8	54	16	40	8
GGCATCCCTCCTTCAT	ref_1364_missing	26	30	36	25	30	24	37	20	41	24
GCAGGCGTAGACGTCC	ref_1364_missing	25	136	33	36	120	28	125	28	107	31
GTGTTCCCCGAAGTAC	ref_1364_missing	8	31	4	6	41	3	37	5	44	3
TCGAGCTTCTCTTGAT	ref_1364_missing	24	39	31	26	42	19	32	26	43	33
GGGATCCAGCCGGGTG	ref_1364_missing	232	397	265	239	401	265	382	243	445	227
TACACAACCCAAGCTC	ref_1364_missing	10	21	13	22	21	11	15	10	24	7
GTAGCTCAAGTAATAT	ref_1364_missing	0	1	0	0	0	0	2	0	1	2
GCATGCCCAACCACTC	ref_1364_missing	3	16	4	11	17	8	14	13	12	10
GATCCAGGCCCCGTCG	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
CTACGTGCACTCAGGG	ref_1364_missing	31	46	35	40	33	26	49	26	60	18
ATTAAGAAGGTTGTGG	ref_1364_missing	166	275	241	193	309	208	298	198	329	200
CAAAGCTTTTTTGCCG	ref_1364_missing	21	27	21	20	27	23	26	17	21	19
CGTCCAAAGATGCGGG	ref_1364_missing	54	99	61	65	93	41	76	66	104	45
CTGCACCACGTGTCGC	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
TTGCCCTACATTAGTG	ref_1364_missing	15	29	21	16	23	18	17	16	25	18
TTAAGCAAAACCATAT	ref_1364_missing	79	163	99	99	106	93	168	74	173	65
TGTTATATAGGCTATG	ref_1364_missing	35	64	39	36	54	35	63	32	50	25
ATCCGGTACACAAGGA	ref_1364_missing	13	13	9	5	16	1	17	7	9	8
CAACGTCGTCCCGAGA	ref_1364_missing	1	1	1	0	1	1	6	2	1	4
TAGCCTGCCTCGATTC	ref_1364_missing	15	25	28	18	21	20	36	15	30	20
GGGTCACTTGTAATTG	ref_1364_missing	124	167	111	136	178	110	207	103	183	110
AGCACGGATATGATCT	ref_1364_missing	2	6	12	8	10	3	5	9	6	4
TTAGGCCTCTCGCAAT	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
TATCAGCAGCAATGGT	ref_1364_missing	124	155	149	101	176	125	162	130	169	121
CCATTACGTTTCGGTT	ref_1364_missing	0	0	0	0	0	0	0	0	0	0
CCCTTAAACAATGTGC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
GCGCGTCCTTCCATCC	alt_1150_upstream	20	28	24	12	27	27	27	21	23	9
AATAGCCGTTGCAGCG	alt_1150_upstream	17	32	22	19	25	16	20	15	38	25
CAAGGGATCCGTATCT	alt_1150_upstream	14	14	14	16	11	14	30	13	20	7
TTTTCTGCGCATTGGG	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
GGTAGATTCTTGATTC	alt_1150_upstream	58	44	56	45	59	51	74	31	58	27
CGCTGTTCTTTGTACG	alt_1150_upstream	23	22	18	15	22	14	29	10	15	10
ATCATATGCGTCGTTA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTTCTTTCCCGGC	alt_1150_upstream	0	1	0	0	0	0	0	2	0	0
TCCCAGGATATGTTAT	alt_1150_upstream	92	139	128	50	153	85	113	75	144	90
GTTTTATCTCGGCTGC	alt_1150_upstream	11	12	24	12	15	16	20	12	25	11
GCCTATGTGTTTCCGG	alt_1150_upstream	24	20	13	11	25	12	19	12	29	18
GCGTTAATCCTTCGCA	alt_1150_upstream	4	16	15	6	17	13	27	10	14	12
TCTTCGTGTTGCTCCG	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
AATGGGTTATTTAGGG	alt_1150_upstream	15	14	20	19	20	15	18	13	24	14
CTTAGTTTTATAGCAC	alt_1150_upstream	3	5	2	0	1	1	5	4	0	1
GAGTATATGCTGTAGT	alt_1150_upstream	65	88	75	52	79	53	71	60	85	46
TATGGGGAGGTTTAAA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
TCAAATTCCTTGTCTT	alt_1150_upstream	65	74	68	61	79	60	77	64	88	64
CGATCTTTGTTCAAGG	alt_1150_upstream	3	17	4	3	8	5	11	5	12	8
TGTCCAATTATGTTGA	alt_1150_upstream	16	13	16	7	23	3	8	15	22	9
ATATGTTTAACCCGCC	alt_1150_upstream	85	91	90	53	99	74	92	55	87	57
AGCTGGGGATCTCAGT	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCATTACGGTTTG	alt_1150_upstream	21	25	29	16	24	28	34	24	35	13
GCTTTTCGCCGAGAAC	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
CACTATCTCTGACATT	alt_1150_upstream	1	2	0	1	0	0	2	0	0	0
TTTAAGGTCGCGACAT	alt_1150_upstream	57	82	84	77	99	73	105	57	105	57
CATCCAATTGGGCTTC	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
AGCCTCGGGCTTCCGG	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAACTGCTTTTGG	alt_1150_upstream	3	5	2	1	5	4	5	4	9	4
AGATAAGCATTAGAAG	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGATTCGTGGATA	alt_1150_upstream	7	12	18	5	12	15	16	4	16	9
ACGTTGCTCGCAGCAA	alt_1150_upstream	49	55	50	26	72	38	69	37	68	41
TATGCTTAGTGGCCGT	ref_1150_upstream	64	97	92	70	119	78	140	66	143	57
GAATGTTCCCATTCTC	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGTCGTGAATTCA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGATAGAGCTTGT	alt_1150_upstream	0	25	2	3	33	7	28	1	41	4
GATCGGATTGTGCAGT	alt_1150_upstream	54	47	58	37	74	40	66	28	54	46
TTGGTTGTGCCAAGCA	alt_1150_upstream	8	19	17	7	10	6	24	7	17	11
GGACTGCGTCATTAGA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTAATCTACATGC	alt_1150_upstream	23	31	38	22	44	31	37	25	52	27
GGCAGCTATTACTTTT	alt_1150_upstream	1	4	9	9	9	7	9	2	12	2
TAGCTTCCTTTCCCTA	alt_1150_upstream	2	10	14	4	12	6	9	4	9	6
CTAAGAGACGAAGTAA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTACCGTGCTCGC	alt_1150_upstream	40	87	54	44	80	53	70	36	62	42
AACGCTTGTGACCCCG	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
CGTGACGTACATCGGA	alt_1150_upstream	32	54	29	32	34	27	43	26	37	20
GCTCTCGCCCTACCTA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
GCATCTATTGCTCGTG	alt_1150_upstream	12	18	10	16	10	9	14	5	14	4
CTGGCCTTCTTCCGGC	ref_1150_upstream	11	11	14	5	18	10	15	5	26	5
GCGCGCACGTAGCAGA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTGCATTGGATGA	alt_1150_upstream	9	9	14	11	17	12	8	8	18	14
TGAAAAGGATGTTAGC	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTGCACGGACAGC	alt_1150_upstream	9	4	14	7	13	9	13	3	6	8
TCTGCGAAATACCCGA	alt_1150_upstream	1	1	0	1	5	2	4	1	7	6
TCGTTAGGGTGTCTAA	alt_1150_upstream	14	24	25	17	26	11	24	15	18	16
AGGCAGCCACCTTAAT	alt_1150_upstream	131	306	202	180	282	161	305	133	265	130
GCAGCTCCTAAATTCT	alt_1150_upstream	18	19	26	19	23	18	41	14	35	18
GTGCAATAAGTTTAAG	alt_1150_upstream	7	19	22	11	19	17	17	13	25	9
GTCTTTATGTCTCATT	alt_1150_upstream	22	45	30	23	35	25	36	20	27	17
GGGGCTGGGTTTATTA	alt_1150_upstream	53	61	54	51	65	52	63	53	60	45
TTGTTCTTCATCCTGC	alt_1150_upstream	10	15	16	22	27	13	23	26	22	15
ACACAGGCTCCTCATT	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTCACGTGTGCTC	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
AAGGAGCCCTTCGTTT	alt_1150_upstream	28	41	21	30	26	31	47	19	57	13
AACTCTTGTCCCAGCG	alt_1150_upstream	0	2	0	0	1	0	2	0	1	0
ATAGCTTCAGATTTTT	alt_1150_upstream	8	12	12	15	21	9	16	5	18	6
TTACGTTCAATACGAT	alt_1150_upstream	24	35	26	22	34	14	43	23	26	27
CCCCAGGTGGTGCAAA	alt_1150_upstream	12	15	14	3	15	9	11	12	15	6
CGATCTGTGGGTTATT	alt_1150_upstream	26	49	23	27	53	33	58	26	63	28
AACACTTCCGGTCTGA	alt_1150_upstream	70	95	105	81	108	83	102	84	130	77
TGGCTTTGCTAATTCA	alt_1150_upstream	48	70	66	39	79	43	84	43	86	40
TCATCGGATGACCACT	alt_1150_upstream	5	12	13	9	6	4	3	6	13	9
CTAGGCAGGGCCCAAA	alt_1150_upstream	22	36	27	19	49	25	42	18	41	20
TACTGAAGTGTAGACC	alt_1150_upstream	1	7	1	0	2	0	4	1	3	1
ATCGCGGGCTCTAAGC	alt_1150_upstream	22	39	37	22	36	17	27	17	51	27
GGTTTTAATGGTCCAA	alt_1150_upstream	1	3	1	2	1	0	2	2	2	1
CATGTGTGTACACTCA	alt_1150_upstream	4	17	1	3	37	1	31	3	32	4
GAAGCGGTCTGTTCGA	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGTTGCTTCCGTA	alt_1150_upstream	42	73	54	43	92	51	85	48	89	39
ATTAAACGATGGGACC	alt_1150_upstream	3	10	8	2	7	4	7	7	9	5
AACAGCACCTTTTTTT	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGATCTGAGTCTT	alt_1150_upstream	19	19	14	11	26	13	19	12	21	13
TAGTCATTGCTCTGCC	alt_1150_upstream	20	39	35	21	38	21	61	19	59	26
GCACGAATCTCCTTTT	alt_1150_upstream	0	0	0	0	0	0	0	0	0	0
TAGAGTGGGACAATTA	ref_1430_negative	59	42	69	70	37	57	53	48	55	49
CAGCTCAGCTGACCGG	ref_1430_negative	18	48	22	13	43	10	41	8	36	20
CTGACTGGGAAATGCT	ref_1430_negative	4	1	2	9	2	2	1	5	2	5
CTTGCCGAGGCTCAGA	ref_1430_negative	10	5	7	13	17	4	8	11	2	7
GTTAGAGGATCCCTTG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TGGCGCCGTTTCCAGC	ref_1430_negative	4	4	9	7	1	5	8	12	4	9
TCGGATGGTAATGTTT	ref_1430_negative	3	7	6	14	3	6	4	7	10	7
CAAGTGCCTAAGGAAA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TTAGTTATCCGCGGTT	ref_1430_negative	2	0	5	0	1	1	0	2	3	2
ACCCTCGTGGATATGA	ref_1430_negative	6	6	8	5	6	7	5	6	4	7
CAAAGTGAAAAGATAT	ref_1430_negative	13	13	11	24	11	13	27	13	16	6
CCGTTAATGGTCTGGA	ref_1430_negative	21	19	30	27	18	19	10	12	14	32
CGCGGCGGCAAGCGAA	ref_1430_negative	4	8	4	4	1	1	4	4	1	4
TTAGCTATTTGTTGAC	ref_1430_negative	23	18	30	27	17	16	27	32	18	15
GGAGCGCATGCTAGCT	ref_1430_negative	32	36	60	41	35	37	25	31	39	32
TATATACGCCGCCATT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GCTACTTTAGGACCCA	ref_1430_negative	11	12	22	12	12	10	10	10	12	2
TGTTAATTGCAACGTA	ref_1430_negative	22	25	28	27	29	23	19	11	21	22
GGGTGCCGGACTACCA	ref_1430_negative	27	36	41	40	35	24	32	30	37	42
TACTTAAAGGGTTGGG	ref_1430_negative	52	68	64	51	56	35	51	68	43	48
AGTCAGAACAGGTGGA	ref_1430_negative	7	6	9	10	9	10	10	6	8	6
CGCCGACCAGGATTTT	ref_1430_negative	44	74	50	44	84	54	100	21	94	26
TGATGTATATGGGCTG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TATATCACGGATATCA	ref_1430_negative	46	42	51	41	48	31	28	43	59	39
TAATTAATAGCTGTTT	ref_1430_negative	47	61	60	42	38	60	41	32	46	32
TATTCTTAGCGCACAC	ref_1430_negative	21	12	18	19	15	13	20	12	27	5
CCGTCTATTTCCTGGG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CTCTTGAAGGAATGGT	ref_1430_negative	13	9	23	16	15	16	17	12	14	11
ACACAGGTCTGGCTCG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GCACCTCCCAGTGCCT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TGGATCAAGGGAAATA	ref_1430_negative	75	70	91	80	59	76	58	77	49	50
CTGCTGCTTAATACTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CTCTCTCTATGTTGCC	ref_1430_negative	26	47	30	14	31	33	42	24	48	25
GTTTCTCTCGTAAATA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CGCACAGGTTCGTTAC	ref_1430_negative	19	23	17	9	18	15	26	18	29	11
CTGCCTTTGTTTGCCC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TGCAGGGGACTCTCTG	ref_1430_negative	17	9	16	11	13	10	7	8	15	14
CTGCCTTTGTTAGCCC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GACTCGTTGCTCCTCT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GACAGCGCTATGCATT	ref_1430_negative	148	178	180	195	210	175	198	131	225	137
GCATTATGTTAAATCA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
ATCGGTGACCCGGTAT	ref_1430_negative	17	13	12	16	15	17	16	8	18	12
CCGTGTGGGTGGTCGA	ref_1430_negative	12	23	20	17	14	8	20	18	20	16
TGGCAATGATACGCAG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TCTACTTTTTGAGGAA	ref_1430_negative	16	13	18	13	11	9	13	17	15	19
TACACCCTGTCACGAT	ref_1430_negative	97	231	144	105	236	114	258	116	236	91
CAAAGCCTATACTAGC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CATTCCTTGTTTATAA	ref_1430_negative	9	15	13	10	12	15	14	8	10	13
TTCACGCGCTGACTTA	ref_1430_negative	1	10	1	0	15	2	14	1	31	1
ACTTGACTCTCATGTC	ref_1430_negative	5	5	15	14	12	12	14	14	14	8
ACTGCTTGGACTTTGT	ref_1430_negative	25	24	17	27	20	16	32	24	15	27
TTGTAGATGCTGCTTA	ref_1430_negative	17	21	25	19	13	16	19	18	18	19
TCATCAGCCAGTTCTG	ref_1430_negative	31	34	40	31	28	41	38	29	23	29
CAATATCTTTATCTTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CTCATCTTTCCACGGA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
AACTTATGTCGAGTCA	ref_1430_negative	27	31	49	33	32	33	31	39	34	30
CTACACCGTAGAGTTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
AAGTGGATCATCATAC	ref_1430_negative	38	36	53	28	24	48	38	50	47	34
AGCTTTTTACCCACCT	ref_1430_negative	5	7	6	7	7	6	6	4	10	1
CGACGTACTATTGAAC	ref_1430_negative	2	1	6	3	1	3	1	1	4	2
GGAGCGCGTAGCTTGG	ref_1430_negative	132	93	153	127	106	112	107	111	120	109
GTGACGGCACAGAAGG	ref_1430_negative	24	6	19	20	10	13	16	11	14	11
TGTTCATTACGGCCTT	ref_1430_negative	13	14	13	16	22	21	28	13	28	16
TTCTCTTCCGTGTTCT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GGGGAGTTGCATTTAG	ref_1430_negative	17	10	24	13	12	10	18	13	19	11
AGCGGTTACTAGAGAT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CCGTTGTCTGTGCACT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TTTAAATAAGAAGCCG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TATAGATAAACTTGTA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GGTTTTCCAATCCGTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
AAAGTATAAGCTTATT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GGCCACTGCCTCGATG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TTTCATGGCCATTCAT	ref_1430_negative	55	56	56	63	40	54	59	29	64	46
CAAGCAGTTCATGCCA	ref_1430_negative	67	127	100	83	125	80	113	71	110	64
GCATACGCATATAATG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CTTAAGTGCCTTGACC	ref_1430_negative	73	85	110	92	71	84	84	63	70	69
TACTAGGTAGTGATCA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GACGCAAGTCTTCTAT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TATACCCTTGTGCTCT	ref_1430_negative	10	12	17	12	9	16	10	17	18	9
TGTATTAACCTTATAT	ref_1430_negative	3	1	5	3	3	1	6	4	3	2
GAATTACTCGCGACTT	ref_1430_negative	25	13	21	13	17	19	20	21	20	12
GAGGTTGCACCTATGA	ref_1430_negative	22	10	19	12	19	15	13	14	17	14
CTCTGGTAGGCTCCCA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
AGCGATTTTTCGCAGT	ref_1430_negative	31	28	31	29	44	37	34	21	39	31
TTGTCCTGCAAGACTT	ref_1430_negative	85	78	99	84	90	108	82	89	92	58
CCCTAATGCGCACAGC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TTACCGGGCTCAGTAC	ref_1430_negative	17	30	16	14	31	12	24	4	35	16
AGCTTGCGTCGGAATT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
ATGAGGGCGCACGCCA	ref_1430_negative	12	4	7	7	9	7	3	12	8	12
CCTCGCATTCTGGCTG	ref_1430_negative	182	174	230	171	129	165	181	159	197	171
CGGTTCAAGTATTTTC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TGAGTGATATTTCGTG	ref_1430_negative	6	12	6	7	5	0	6	7	6	3
ATTCAACCTTACAATG	ref_1430_negative	27	22	20	10	13	8	22	15	29	20
CGTGGGAGCTTGTACG	ref_1430_negative	141	114	154	140	104	105	112	121	117	128
TTTGTATGATCTATCT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TAGTCCTCCCGCGAAT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
ATAAAAACCGGGACTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GCGACATTGTCCTCGC	ref_1430_negative	122	112	142	135	120	93	111	120	123	136
TGGCCTACGACGACTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
AAATCCGTAGTAGGTA	ref_1430_negative	28	14	35	28	24	21	22	14	24	16
TACCTTTCTGATCTAC	ref_1430_negative	14	16	16	24	17	10	25	17	12	13
TGCGGTTACTAGAGAT	ref_1430_negative	91	92	101	95	98	95	95	97	116	87
CTTATCGGTGATTAAA	ref_1430_negative	18	10	14	14	11	12	12	9	8	12
CTCAGAGACTTCGCGG	ref_1430_negative	25	18	18	29	21	17	28	26	29	18
AGTGTCGAGCTAATCT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CTCTACTATTGGGAAC	ref_1430_negative	3	11	5	5	6	11	13	5	8	3
ACGAGATGTCGGTGCG	ref_1430_negative	38	28	35	34	30	35	30	38	28	33
TTGTATGTGTTTCTCG	ref_1430_negative	25	36	15	19	22	31	26	18	33	16
GCCTCGCCTGAACCGT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TTCGCCATTGGTGGTC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TGAAACGTTATGATCT	ref_1430_negative	15	21	25	25	10	20	20	32	17	18
TAGTCCCAGTGCCTTC	ref_1430_negative	21	24	20	27	18	12	16	13	18	15
GTGTTCTCTCCTCACG	ref_1430_negative	1	2	4	1	2	3	0	0	1	3
TTGGTTGTGCGAACGA	ref_1430_negative	17	16	21	12	16	18	13	20	23	17
CAATCGACTCGAATGG	ref_1430_negative	7	11	9	6	7	7	4	8	4	9
TTGGTAGTATTTTTAT	ref_1430_negative	28	32	36	37	28	42	30	35	34	29
CTTACTATTTTCCTTC	ref_1430_negative	136	126	193	148	115	136	108	148	127	133
GTGTTGGCGCAGCATG	ref_1430_negative	24	23	23	21	30	20	26	27	35	19
CTCTCTACATTCTGCC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
ACCTTAGTTCGTACAG	ref_1430_negative	124	140	180	145	146	129	130	110	138	113
TCTGGCCTGGTCTTTG	ref_1430_negative	23	19	40	26	29	23	25	23	25	22
GCGCCATGGAGGATTA	ref_1430_negative	64	54	68	63	54	77	46	55	59	55
ACAGCCCTAATCAGTC	ref_1430_negative	21	17	25	22	24	9	17	14	18	14
TTGCCTCTGGGAGTCT	ref_1430_negative	17	29	29	25	24	22	32	20	25	27
ATGCTTCAAACGTAGC	ref_1430_negative	77	57	80	58	77	65	64	56	59	52
ATTTGTTATGCACGTT	ref_1430_negative	28	32	40	41	32	20	27	36	38	23
GAATCTGTATGAACGA	ref_1430_negative	7	1	5	6	4	3	3	1	2	3
TTTTGGGCCTCAGGTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
AGTGGGTCCAGGCATA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GATGGGCGTCGCGCCC	ref_1430_negative	13	6	15	7	10	8	17	15	14	13
GTTTACTATGATCAGA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TGTAACCGAGCGTGGT	ref_1430_negative	11	16	9	5	7	6	7	9	13	11
AACTTCGCATCAATTT	ref_1430_negative	66	54	92	87	82	69	70	80	70	62
ACGCCTGCGATCATAA	ref_1430_negative	56	53	65	74	60	73	59	61	57	56
TCTCAGCAATGAACGG	ref_1430_negative	54	53	72	53	48	37	52	50	43	42
CTAAAGCATGGCTTAT	ref_1430_negative	41	34	33	31	30	50	46	43	44	34
GTTGTTGATTTATGGT	ref_1430_negative	50	43	70	55	40	49	42	48	57	48
ATCAGGTGTGTAATTC	ref_1430_negative	107	135	133	117	139	108	131	128	125	118
ACCCACCCTTTCCCGC	ref_1430_negative	81	99	95	84	106	68	101	88	133	75
TTATTAAACGAACAAG	ref_1430_negative	30	23	36	35	41	33	34	26	21	20
GAACCCCTCGCTCTAT	ref_1430_negative	83	73	94	86	57	102	89	60	66	81
TTCAGCCACTGCTATA	ref_1430_negative	92	87	97	76	142	79	133	73	133	75
GCCGGTGTCGCCTCCC	ref_1430_negative	13	12	10	13	5	17	12	10	16	10
CCCGACTGTAGGGCGT	ref_1430_negative	7	14	7	13	10	5	11	2	23	7
TTTCAGTCTATCCTAT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
CAGTTTCCATGTGGCC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TTAACGAGGAGCGTGC	ref_1430_negative	92	122	139	116	101	94	99	105	94	97
TAATTCATGATGCATG	ref_1430_negative	217	255	245	240	177	208	202	160	231	199
ATTCCTGATATTCGGG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TCGTGGTCCGTTAACG	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TATCTGGTCTGTTAGG	ref_1430_negative	73	93	115	93	80	89	84	85	87	103
TTCTGATTGCGGGTTC	ref_1430_negative	79	94	118	81	81	99	124	72	110	84
AATTCCTCTAACTCGC	ref_1430_negative	87	64	97	69	68	69	75	80	71	85
CGTATGTCCCCGCCAT	ref_1430_negative	56	53	79	62	70	73	68	62	74	76
CATGGCGTCGCACGTA	ref_1430_negative	10	14	15	9	9	17	11	16	8	9
CTACTCCGCTCAAAAT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GATAGGTGTCACCCGC	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GGCAACATCACAGTCT	ref_1430_negative	61	73	111	65	77	78	66	91	75	82
GCCTTAAGTTGACAAG	ref_1430_negative	38	25	29	44	18	36	47	41	38	24
GCCAAATCGGGGCCGA	ref_1430_negative	62	49	75	52	52	55	53	59	59	49
GCCGTCTGGTCAAGTT	ref_1430_negative	5	6	5	5	17	4	7	8	8	4
TCAGTGAGGTCATCTC	ref_1430_negative	1	2	6	7	1	9	0	2	2	4
CGCGAACATCGGCTCA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GGTTCTCCGCTGTCTA	ref_1430_negative	13	8	26	14	17	15	27	21	21	8
GCTCTCGCGCGACGCT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
TCTGTTTTAATGAACT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GTGTCCTATCTTCCTT	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
GGTCACCTCTACTGAA	ref_1430_negative	0	0	0	0	0	0	0	0	0	0
AGGCACCTAGGGACAG	ref_1430_negative	21	17	27	28	25	31	31	22	43	27
ATTCGATTGAGCGGAT	ref_1430_negative	12	35	42	30	29	35	22	26	23	29
GTGGATGGTCCTTGGA	ref_1430_negative	11	10	16	15	9	16	14	11	16	9
TGCCCTGAAAGGCCCC	ref_1430_negative	8	5	6	7	9	8	7	13	4	18
CGTTTCTGTTCGACAG	ref_3951_RC	23	22	23	9	26	23	20	14	27	17
AAGATACTCGTTCTTA	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
GAAGCGGTATTGGATG	ref_3951_RC	3	6	6	5	7	3	2	5	12	3
AGGGGATAAGGTCGGC	ref_3951_RC	47	46	55	46	55	45	36	45	48	45
CAGATCGTTTTGATAC	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
ACCGCGGCACGGCTAT	ref_3951_RC	0	1	0	0	1	0	1	0	2	0
TACCCACAAGACTGCG	ref_3951_RC	8	8	14	15	9	11	15	12	16	9
CTCTATTGTTCTTTTC	ref_3951_RC	13	16	12	11	14	4	24	8	19	13
CTGGAGTTCTGACACT	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
CATTTGGATCCATACC	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
GTATTTTGGCTAATCC	ref_3951_RC	35	33	25	28	42	15	43	18	20	22
GTCACATCCGGACCTC	ref_3951_RC	19	33	28	16	13	19	19	22	35	20
ATCTATAAATTTATCT	ref_3951_RC	44	57	60	40	57	56	64	37	53	36
GGGAGTGTGTTACCTG	ref_3951_RC	4	15	6	4	17	10	14	4	18	1
TGGGTCTGACTATCTT	ref_3951_RC	3	4	10	8	7	9	9	3	7	2
CACACAAGTTAACGCT	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
TAGGGTCATATTCAGG	ref_3951_RC	24	29	25	22	26	29	31	19	30	16
CGGACAAGCACCCGGA	ref_3951_RC	2	8	3	7	2	3	5	3	4	6
CTAAAGTCTTGCTACG	ref_3951_RC	31	54	42	27	55	27	48	37	53	42
CGTTATACCCTAGACC	ref_3951_RC	13	28	11	13	25	6	27	8	30	10
CGCTCTGATCTTGTCC	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
ACGATTACTGTTTGCT	ref_3951_RC	14	19	12	14	10	11	13	7	15	6
GCCATTGAGCCTAGAT	ref_3951_RC	102	127	123	105	137	101	140	96	173	93
TACTGATAGTAGGATG	ref_3951_RC	125	183	174	143	184	130	168	140	182	130
CTGTTCCGAGACAAAG	ref_3951_RC	17	34	33	31	39	29	30	23	33	19
GTGATGAGCATAGTCT	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
CATGTTCCCATTTTAG	ref_3951_RC	39	45	29	29	34	33	44	30	47	31
GATTCCCCATTGCCCC	ref_3951_RC	12	22	17	12	29	15	18	18	26	16
CCTACGCAACAGTTGA	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
GACGCACTCAGACCTA	ref_3951_RC	26	30	22	23	27	13	28	26	35	18
CTAGAGTGTCTGTTGA	ref_3951_RC	27	41	28	30	37	14	33	23	49	10
AGATGTTTTTGCCTGT	ref_3951_RC	41	70	56	55	50	57	58	34	70	61
TGACCTCCCTCCACAT	ref_3951_RC	3	5	4	1	8	3	2	2	2	3
CGGAGGAGCGACGCTG	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
TGTGTTAGATACCTGC	ref_3951_RC	21	25	24	19	18	20	29	18	30	13
TTCGGACATATCCTCT	ref_3951_RC	40	47	31	35	35	29	41	28	39	28
ATGCACCGATGTACCC	ref_3951_RC	1	2	3	1	1	0	2	1	3	1
ATGGTGTTTTATGTCC	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
TAACAAACATTACTTT	ref_3951_RC	6	7	3	3	9	4	9	8	10	9
CCCTCATTAAGGCGGT	ref_3951_RC	6	26	6	8	23	7	28	4	24	8
AGCATCTTATGACTCA	ref_3951_RC	14	8	22	14	16	13	14	10	21	13
TCATCATCTTGTGTCC	ref_3951_RC	19	73	30	30	77	22	74	16	70	17
TAATAGTTGTATCCTC	ref_3951_RC	1	11	1	4	0	5	5	1	0	2
GCTTTCTCGATCCACT	ref_3951_RC	2	6	4	3	17	4	10	2	6	1
TCGCTTTCCTGCGCCA	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
TTGTTACACTTCCTGG	ref_3951_RC	27	75	25	28	96	15	70	27	80	27
AAATGCGATTTCCCTT	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
CATTCAGGTGGCTCCC	ref_3951_RC	140	261	207	177	245	160	255	147	279	143
AGTGTCAACCTCTAGC	ref_3951_RC	1	0	0	0	0	0	2	0	0	0
TCGTTGGAACAGTAGC	ref_3951_RC	47	109	81	54	76	46	69	51	74	52
TTCTATTGAGATTCTC	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
TATGATTGGTGGCTCT	ref_3951_RC	63	107	85	75	83	65	105	63	106	61
ATATTGTTTCTTCAGC	ref_3951_RC	63	72	66	56	91	71	97	53	104	56
TTTCCTAAGCAAGCTA	ref_3951_RC	53	65	89	74	99	39	95	67	106	52
GCTGGTGTGTACGCTG	ref_3951_RC	13	11	19	13	15	18	8	15	17	14
CAATATTGGCATCTTT	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
CCCATTTACTAGAAAA	ref_3951_RC	10	19	25	25	26	19	20	28	32	19
TTTCGGTTGTACAACC	ref_3951_RC	8	10	29	10	12	22	23	19	16	14
CAGCCTCAAGCGAGCC	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
CATAGCGGACATCCTA	ref_3951_RC	31	27	28	26	29	19	31	20	29	28
TGTGGTTTTTCGTGCC	ref_3951_RC	4	4	4	5	6	5	2	8	6	3
CTCGTCCTCTAGGTTA	ref_3951_RC	24	39	33	33	38	28	38	15	43	23
AGTGCAGACTTCCCTC	ref_3951_RC	20	23	17	26	26	19	32	19	25	23
AGATTCCGGATTCTGA	ref_3951_RC	83	90	106	96	123	82	103	70	117	83
TCGATGCTGTAGTCGA	ref_3951_RC	8	17	15	10	9	14	17	12	17	7
CAAGCACGCCACTTTT	ref_3951_RC	56	55	69	72	80	50	54	69	57	63
TATGGCTCCGTTTGGG	ref_3951_RC	55	78	71	64	78	67	98	45	79	48
CAGTTAATCGTTCGAT	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
ACTAAATCCGCGAGGG	ref_3951_RC	1	1	1	1	6	3	4	2	5	1
TAAACAGCCATTGTCA	ref_3951_RC	11	18	16	15	25	14	23	10	30	17
AGGTCTGGCCAACATA	ref_3951_RC	18	26	13	21	28	20	23	17	26	19
CGAGGGACTGCACGAA	ref_3951_RC	39	59	76	52	47	59	52	32	58	46
TCTTTCGATTAGGTTA	ref_3951_RC	84	114	107	94	124	74	126	83	124	100
ACATGTATAAGCCCTC	ref_3951_RC	37	48	39	38	55	39	58	26	46	47
TGAGCAGGATGTCTGC	ref_3951_RC	5	7	5	2	3	1	2	1	1	3
TTTGTTACTGTTGGAA	ref_3951_RC	60	88	58	67	107	55	78	43	85	53
TGTGACTTCACATATG	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
TTTGGTCAATAGATCG	ref_3951_RC	2	4	3	1	3	2	5	0	3	0
CTCCTGGTACGAGGCA	ref_3951_RC	16	24	32	32	46	38	54	25	40	44
GTTGATTACGATTTTC	ref_3951_RC	0	0	0	0	0	0	0	0	0	0
GCAGGCTCATTTCGCT	ref_3951_RC	15	47	36	28	31	29	45	26	70	18
TTGGGGCACAAGTGGA	ref_3951_RC	15	26	18	16	25	19	23	22	39	25
ACGACATTACTAACAG	ref_3951_RC	4	10	9	12	8	6	11	14	3	6
TTGACGAATTGGACAT	alt_2632_upstream	68	56	81	53	64	60	52	63	80	70
TATATTCGGTCGCGTT	alt_2632_upstream	7	3	8	3	2	9	7	5	8	5
TTCCGACTGCAGCGCC	alt_2632_upstream	13	26	27	29	36	12	31	21	32	17
GCCTACGATTTTTATA	alt_2632_upstream	54	78	64	47	79	46	58	58	71	39
CAGCCCTTTTAGTTGA	alt_2632_upstream	32	53	33	29	57	31	67	22	58	37
GTAATACGATCGTGCT	alt_2632_upstream	13	10	10	17	8	14	15	14	24	19
GTTTTATAAACGTACC	alt_2632_upstream	44	45	51	46	51	48	54	41	59	45
ACTAATGTTTAGCCTA	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTCCACTTAAGCTGCA	alt_2632_upstream	44	18	29	24	24	18	29	21	16	29
TCGAGACCCCATCGTC	alt_2632_upstream	0	1	0	1	4	1	1	0	2	0
GCCCGTCTGCCCGACA	alt_2632_upstream	51	48	54	32	36	37	38	41	51	38
ACTGATGTGCTATTGG	alt_2632_upstream	115	123	116	107	165	100	129	122	127	85
GTGTAGAGTAGTGATT	alt_2632_upstream	27	25	29	23	19	18	35	26	23	20
TCGGCTTCGTTAGATA	alt_2632_upstream	27	27	24	29	33	20	30	21	26	13
CTGCGTGGTTGCGCGA	alt_2632_upstream	21	9	5	11	9	9	5	12	9	4
TTTCTTAGCAACTCTG	alt_2632_upstream	4	6	12	7	2	6	10	7	13	4
CTGAAGAACTGTGCAC	alt_2632_upstream	13	18	21	8	16	23	15	12	11	12
TGCTCCTCGTATCACC	alt_2632_upstream	33	46	15	27	42	25	39	28	40	14
GCGCATTAATTATAAA	alt_2632_upstream	21	26	38	20	15	17	28	21	18	14
TTCATAGGACGAACGC	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCCACGTTATAAG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
GTACTTGGATTTTTCT	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGGTGTGAGTTCG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TGTAGGCTCAATAAGG	alt_2632_upstream	31	28	24	14	21	21	26	28	21	27
TTTGCAAACCATCTGA	alt_2632_upstream	8	6	6	1	7	6	12	6	7	7
TGTTCCCGTGGGGTTG	alt_2632_upstream	46	55	50	42	62	55	62	44	58	51
GGCCATCGGCCCTATG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
ACGGATACTCGGAGTG	alt_2632_upstream	56	43	53	66	46	50	56	54	44	30
GCGGGCGCCGGTCCTT	alt_2632_upstream	18	20	29	15	28	22	22	17	26	14
GTCCCTGTGATTGGCC	alt_2632_upstream	68	79	80	74	87	61	100	62	98	57
ACAAAGGGACCTGGTA	alt_2632_upstream	57	60	87	73	64	65	71	62	58	46
CATGGTTATCGGGTCG	alt_2632_upstream	22	25	26	21	28	20	17	21	11	14
GTGCCACCGCATTTTG	alt_2632_upstream	5	15	9	11	24	8	12	2	11	7
TCCAGGAGTGCACTTA	alt_2632_upstream	1	3	4	2	10	5	6	7	7	0
GTTTCACAAGTTCCGC	alt_2632_upstream	5	10	9	7	8	7	12	12	4	5
AGTCGGACGTGGTCTG	alt_2632_upstream	53	59	66	52	38	52	57	46	60	39
AGCAGCTCTTTTGTGG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
CGTTACAGGATGTGTA	alt_2632_upstream	58	49	86	64	74	57	68	53	71	63
GAGCGCACTTTAGCAC	alt_2632_upstream	28	36	27	27	31	28	32	29	47	30
CCAAGTTGTATAGACG	alt_2632_upstream	10	8	10	11	15	9	4	10	22	14
AACGGTAGTAATTGGG	alt_2632_upstream	0	7	7	2	4	4	4	5	13	3
GGTTTTCCGTCTTTTC	alt_2632_upstream	90	57	98	78	64	67	79	76	76	74
TTCATGGCTATCTTAG	alt_2632_upstream	17	3	9	8	8	10	8	8	10	9
GTTTAATTTTTCTCTC	alt_2632_upstream	10	5	9	13	1	7	7	4	3	6
TACTGTTCGCAGCACA	alt_2632_upstream	71	53	91	68	76	74	61	78	96	80
CGCACTGTTGCACATG	alt_2632_upstream	17	18	37	28	29	26	32	24	37	20
GGAATACCGTTACCTG	alt_2632_upstream	7	15	9	8	14	10	15	10	20	8
AATTTTACCCACGCTG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
CTGATCATTGGCTAAA	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTGGTTCTTCTT	alt_2632_upstream	10	8	14	10	7	15	8	6	4	4
CTTTCGGGCTGTGAAA	alt_2632_upstream	34	44	46	37	56	37	53	31	40	23
CTAAGACGATTCACTA	alt_2632_upstream	29	32	40	36	28	24	29	23	29	23
CGCCGACCGTGAAGCG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGGCAGGCCGGTC	alt_2632_upstream	89	67	85	82	65	66	75	69	70	71
TAGTTTCTCTTCTTTT	alt_2632_upstream	82	66	80	88	76	62	64	85	79	57
ATCAGGCGGCCGCGTG	alt_2632_upstream	19	30	19	25	24	14	35	14	22	9
TACAAAGACTATAGAG	alt_2632_upstream	34	45	63	44	25	50	52	35	47	44
ACCTTTTGTTTTATCT	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
AATCACTGGGCGTGTA	alt_2632_upstream	74	84	104	67	101	61	80	63	107	69
TCTTGAGATTACACCG	alt_2632_upstream	27	42	44	44	48	47	36	35	25	28
GCGCTTTTTAGATGCT	alt_2632_upstream	90	84	75	83	54	73	65	76	104	77
ATGGCTTTTTGTTCGG	alt_2632_upstream	45	22	50	27	47	26	41	24	44	21
AGTTCTTAACTGGCTG	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
AGGTACTTCGGCTGTA	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCTTGCCTCACTA	alt_2632_upstream	11	7	11	14	6	9	12	14	12	2
AAGCGGCTATCCCCGT	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TGTGCAAGCACCTGTT	alt_2632_upstream	25	39	50	43	34	29	44	17	57	29
TAAGCTGCCTGGTCGC	alt_2632_upstream	43	41	48	30	45	29	53	38	55	33
TTTGTGATTTCTCATG	alt_2632_upstream	6	8	15	7	8	13	17	12	18	18
TTCAGTCCTCTGTCCG	alt_2632_upstream	6	11	13	9	14	11	20	13	17	8
GGCTGCTACCAGTTAT	alt_2632_upstream	68	95	85	69	105	65	88	85	93	54
GCATATAACCATAGGT	alt_2632_upstream	178	205	238	249	210	207	222	201	271	176
TTCTTCTGCGATGTAC	alt_2632_upstream	155	138	156	164	156	138	126	119	126	113
AGCACCCGTTTGCGCA	alt_2632_upstream	21	28	33	32	31	31	34	29	30	22
TCCTCATTCGCCTAAA	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TACTCGCTTGTCGTCT	alt_2632_upstream	37	35	47	41	41	28	42	43	39	46
TTCCCCTCATGTGAGG	alt_2632_upstream	19	19	25	23	24	16	18	23	29	19
AACGTCTCTTAGATTT	alt_2632_upstream	38	34	64	54	56	46	63	55	52	69
AGAGACACCCGGTCCT	alt_2632_upstream	2	0	0	3	3	0	2	2	0	1
GCATTGTATTACCTGG	alt_2632_upstream	23	29	47	16	38	32	33	32	41	26
TGTAATAATCTCCGCT	alt_2632_upstream	398	386	518	422	404	371	420	385	404	340
GAACTCTAGAACAGTT	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGATCGACCTGGA	alt_2632_upstream	2	11	2	2	10	2	12	2	10	5
CGAATGTAACACCGGC	alt_2632_upstream	176	177	216	181	176	182	193	205	160	196
ATGTTCAGGGATTGCC	alt_2632_upstream	91	84	98	86	95	85	82	61	80	66
TCAATACCTCCTGTTA	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
CCACTTGCACATCTCC	alt_2632_upstream	12	19	17	21	25	17	25	21	30	27
AGCGCTTATAGCCTCA	alt_2632_upstream	7	15	10	13	15	14	17	12	13	16
GTGCCTCCCGTTCAAC	alt_2632_upstream	19	28	29	37	22	21	22	26	38	16
CTCCTAAGTTAATTTT	alt_2632_upstream	35	25	38	35	41	21	36	26	31	40
TTATTCTGTAGGAGGG	alt_2632_upstream	26	19	33	35	29	17	25	12	23	22
GCGCCCGTTCATTGTG	alt_2632_upstream	24	31	41	37	42	28	39	32	49	24
AAGCTTCCGGTAACAG	alt_2632_upstream	10	6	17	11	4	9	12	9	2	6
ACACGGGACAACGCCC	alt_2632_upstream	47	73	53	56	57	47	79	60	67	54
ATCTGGCCTGTGATAA	alt_2632_upstream	18	13	16	12	15	8	18	16	18	9
CGACCCCCTGGTGTCC	alt_2632_upstream	8	3	4	7	5	3	4	4	13	13
TTAACCAGGGGCCAAT	alt_2632_upstream	71	74	87	64	54	56	80	45	80	60
AGCTGGGTTCGATAGC	alt_2632_upstream	48	42	54	57	50	51	62	42	65	38
CGGTTTGAAGGGGCAT	alt_2632_upstream	6	3	7	2	2	9	9	1	3	3
GTGTGTCGAGATTGAA	alt_2632_upstream	14	18	16	18	19	25	12	21	21	22
AACTGAATCCCTATTA	alt_2632_upstream	98	84	97	98	86	90	101	82	116	82
CTGTCGTTTGCGTAAT	alt_2632_upstream	33	48	25	34	34	26	37	33	32	37
CACCGATCACTTGTGT	alt_2632_upstream	21	37	17	22	37	22	51	18	54	16
GAGCTTCTGAAGAGCC	alt_2632_upstream	13	23	20	14	22	11	12	10	23	15
ATGCTACTCGTATCAC	alt_2632_upstream	15	22	26	15	18	14	17	16	16	11
CTGAACGAGCGCGCCG	alt_2632_upstream	41	41	51	37	34	40	32	30	31	40
TTCATGGAAACCTCCG	alt_2632_upstream	4	8	3	6	5	4	7	7	9	2
TCCCTCATGCATTGTC	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TGACTTTGGCGCCGCG	alt_2632_upstream	13	10	9	10	12	9	8	19	17	10
CCGAGTAAGTAATCAT	alt_2632_upstream	83	88	127	88	92	80	96	72	117	80
AATTCTGTGATTCGTC	alt_2632_upstream	17	18	16	15	10	10	6	12	11	7
GTCCCTTTCCGTTGTT	alt_2632_upstream	19	4	11	16	14	10	9	15	6	5
CTTTGGTGTTATCGCG	alt_2632_upstream	32	14	33	27	33	21	32	33	37	21
GTAGTATTCCCTACTC	alt_2632_upstream	29	52	29	23	54	22	53	16	83	27
AGAGTAATTCACACGT	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TACGGTATGCCCCTTA	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
GCTGGGGAAACATTGA	alt_2632_upstream	0	0	0	0	0	0	0	0	0	0
TACTTCAATACGGCTA	alt_2632_upstream	18	15	22	30	31	24	34	11	22	26
CAAGATAAGGGTCTAT	alt_2632_upstream	9	9	10	9	5	11	7	5	5	5
TCGAGTCCATGACTTT	ref_3478_reverse	142	109	183	145	95	155	116	128	123	134
TTATCGCAAACGTGAT	ref_3478_reverse	67	66	72	64	75	62	64	67	73	47
ATTCCTGACGTCATTT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGGTGGTCTCGA	ref_3478_reverse	36	30	48	41	23	34	28	27	38	29
CAAAGAGTGCTTGGAT	ref_3478_reverse	24	34	40	20	20	24	28	29	26	24
TGTTATTGAGTTCTGG	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCTAAGATAGGAT	ref_3478_reverse	4	33	14	19	20	21	24	13	17	10
CGTACGGGCCCCCCGC	ref_3478_reverse	5	15	7	3	24	6	19	10	24	6
TGTCCGAGCTGAATGG	ref_3478_reverse	31	17	35	37	28	29	36	29	23	26
TGGTCTTCTACATGTC	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTACCTCATCAGAATT	ref_3478_reverse	13	12	9	8	11	7	7	10	11	3
TTGTATTCTGGAACAT	ref_3478_reverse	63	68	103	64	58	67	68	70	100	82
TAATCTTACGATCGGA	ref_3478_reverse	117	91	131	116	80	109	102	129	90	104
GGTTTGGCAGGTACAT	ref_3478_reverse	6	11	12	15	11	17	12	12	14	12
CCTAATCGATAACTTT	ref_3478_reverse	83	73	100	61	69	45	64	79	51	55
CGCAATCATCACGACT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTGGCCATACTAC	ref_3478_reverse	40	21	62	46	27	45	34	39	34	42
GCATGTCTAATTTATA	ref_3478_reverse	36	22	35	18	15	27	21	21	14	26
GCAGATTTGGACGCCG	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGCCCTTTGCTGG	ref_3478_reverse	10	12	13	21	12	13	18	10	21	9
ATCCCACCACTCGTAG	ref_3478_reverse	8	4	11	13	6	7	7	5	9	7
GTCCACTACAGCACGC	ref_3478_reverse	4	7	12	7	5	9	6	4	6	2
TTTGCTAGCAGCGGAG	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CCGAAGGCGCTAACCA	ref_3478_reverse	10	17	4	15	11	8	19	15	21	12
GAGCTGTTGTAGTATT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
TATATATCCCATGTAT	ref_3478_reverse	5	7	6	5	3	3	8	4	2	6
AATTCGCAATCGGTTG	ref_3478_reverse	21	19	26	20	12	19	18	14	19	16
TGTCGTATCCAACATC	ref_3478_reverse	19	16	13	18	12	14	19	15	20	7
GGATACGTGTAGGATA	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGGCATCAAGTA	ref_3478_reverse	20	13	28	35	23	19	13	19	22	11
TAACGTTTCAGGTGAG	ref_3478_reverse	8	7	4	11	8	15	2	8	7	15
CGACTTGTAAACGAAA	ref_3478_reverse	5	10	8	15	7	8	9	14	6	5
CCACACAGTCACACTT	ref_3478_reverse	14	22	22	14	28	10	22	27	15	22
TGTCGGGGGTAAGTTA	ref_3478_reverse	125	117	177	172	102	118	99	155	141	122
CATCGGATTCGGACAG	ref_3478_reverse	9	11	9	14	7	12	17	14	4	15
CCCCAATTTGATGTCT	ref_3478_reverse	15	18	22	22	14	23	17	21	24	11
TCGTTGGTAATTGCAG	ref_3478_reverse	12	15	12	13	7	9	7	12	7	10
ATTGGCTCCTCTGCAG	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
GTCCACGCCATTCGGC	ref_3478_reverse	36	25	30	28	22	34	32	34	28	43
TAGGGCTTTCTTCCGC	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTAGTTGGCAGGT	ref_3478_reverse	4	5	10	0	13	6	4	7	8	6
TGGCTGTATCCCGGCA	ref_3478_reverse	69	40	65	55	72	47	50	60	56	47
CCTGTTGTTCCTTGTA	ref_3478_reverse	11	9	18	12	15	8	11	8	6	5
ATGGGGTGCTATTATC	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCGTTCCTCACGC	ref_3478_reverse	21	19	30	14	18	24	24	20	16	25
ACACTTAATACGTTTA	ref_3478_reverse	68	55	89	92	64	60	71	72	71	65
AAAGGCTTATCCCTAG	ref_3478_reverse	96	78	95	83	79	84	71	66	62	60
ACTATAACGAACAATT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
GGATGCTATTGCATGC	ref_3478_reverse	30	16	40	24	22	29	19	28	26	19
GAAATGCCCCCGAGGG	ref_3478_reverse	18	10	17	19	12	21	12	8	10	20
CGGTTATAGCAGCCCG	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
GCACCCATTGCCATGC	ref_3478_reverse	7	4	11	7	0	7	3	4	7	2
GTAACGATTAGTTTCG	ref_3478_reverse	57	49	88	65	48	67	62	71	52	76
TAGGTGCACGGTAACG	ref_3478_reverse	138	106	135	111	110	144	124	118	125	119
GTATAATTCAGCCCAG	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
AAACTTTGATTGTGAA	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
ACAGGACTTGCTACGT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGCCCGGGACCCT	ref_3478_reverse	30	21	37	32	16	20	22	28	24	20
TTGTACTTTAGCACGT	ref_3478_reverse	16	15	26	14	12	23	18	23	17	13
TGTTGTAACTGGTTTG	ref_3478_reverse	107	101	133	118	105	99	119	86	114	92
GTATATGGGTTATTAC	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGTTTATGTAATC	ref_3478_reverse	59	43	73	55	59	57	45	44	40	35
GATCGTGTCCGAATAC	ref_3478_reverse	29	18	30	35	31	18	36	38	22	30
GGTATCTGTCCGCACC	ref_3478_reverse	24	12	29	15	18	17	15	22	28	20
AAAAAAAACCTTATTT	ref_3478_reverse	53	48	74	66	45	52	40	48	38	57
ACTTTCCCCCAAGTTT	ref_3478_reverse	12	7	25	11	17	8	19	13	12	4
ACGGAGGTACCGTCTT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
TTTTATAGTGAGTATC	ref_3478_reverse	15	12	14	11	13	27	11	13	16	9
CTTTGAACGTCTAGAA	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGCCCGGGATAAG	ref_3478_reverse	47	25	60	36	47	38	48	50	43	49
TTCGAGGGCTCTTCAT	ref_3478_reverse	73	66	132	102	94	117	81	108	93	86
GCAACTCAGCTCCAAC	ref_3478_reverse	5	4	9	5	5	9	4	6	12	6
CTTTGGAACTGTGTGT	ref_3478_reverse	142	121	131	112	107	110	109	113	129	113
GCTAACTTGTAGTGTC	ref_3478_reverse	19	11	18	10	15	9	16	12	19	16
TACTCCCAACAGTCGA	ref_3478_reverse	61	56	88	74	75	69	68	77	65	57
CGACCAGGAGGCCTGT	ref_3478_reverse	19	14	15	18	15	16	15	18	28	23
ATGGCAAGGTACAGTT	ref_3478_reverse	7	6	20	7	9	7	6	9	7	7
TGCAAACGTGTCTACT	ref_3478_reverse	41	42	60	49	44	42	37	54	44	48
CGTGAGGTATATGTTT	ref_3478_reverse	36	27	43	45	34	39	23	56	26	32
ATTTCAATTTGAGCCC	ref_3478_reverse	32	26	40	36	17	35	35	29	26	31
TATTGTGATCATAGCC	ref_3478_reverse	42	35	59	36	43	42	36	29	50	51
TAACCGTCTGCGTGCC	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGAACTGGGGTGT	ref_3478_reverse	66	44	76	66	68	77	70	75	65	69
GATACATGTTCGTTAC	ref_3478_reverse	45	29	48	45	36	48	37	38	38	38
ACGTGATGCCGCAGTT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
GCCTAATAGTTATAAT	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CTCATGGACGAATGTG	ref_3478_reverse	0	0	0	0	0	0	0	0	0	0
CGTATTAATAACCCAT	ref_6037_new	9	9	18	14	17	6	17	9	19	7
CATATTTGATAGCTTC	ref_6037_new	11	26	24	2	18	8	23	10	30	11
ACTGAACTACCATCCT	ref_6037_new	22	29	31	13	36	18	38	20	57	17
TGTGCGGGCTTACTTT	ref_6037_new	8	13	11	10	9	4	21	9	11	10
TCGTTACTCCTCGTTA	ref_6037_new	22	34	26	17	48	18	34	22	45	22
GGGTGCCATAATGGAG	ref_6037_new	55	73	67	46	89	47	64	66	78	45
TAATAACCCATTCTTT	ref_6037_new	9	6	25	14	15	11	29	13	24	10
GCAATCCTGGGCATTT	ref_6037_new	0	0	0	0	0	0	0	0	0	0
TTATTCCTTCGTTTGT	ref_6037_new	11	15	10	8	22	11	19	7	22	17
TGATTGTGACGGATTT	ref_6037_new	0	0	0	0	0	0	0	0	0	0
ATTCGTGGAGTTCGCG	ref_6037_new	279	428	339	293	479	257	466	269	438	236
AGAGTTGGTATCGGCG	ref_6037_new	27	29	36	27	36	21	48	19	44	22
TAGGGCCAATCTCATA	ref_6037_new	2	6	5	2	6	2	7	1	6	3
GTCTCATGCCCCGCCC	ref_6037_new	9	20	21	17	19	9	10	4	19	5
ATCGCGCTTTATCTCC	ref_6037_new	49	53	64	47	61	48	79	32	63	47
CTCATGGTGATGGGAT	ref_6037_new	11	14	13	4	10	6	11	4	18	3
AATCGTGGAGTTCGCG	ref_6037_new	0	0	0	0	0	0	0	0	0	0
ATGTTTTACATCTTTT	ref_6037_new	13	14	10	11	19	12	24	5	16	2
GGAATATCTTTTAACC	ref_6037_new	38	58	45	57	54	24	70	25	49	33
CCATCGAGTCTTAACA	ref_6037_new	49	97	36	26	91	33	107	28	90	33
CTTTTCTGAGTTGTCA	ref_6037_new	21	24	20	24	48	15	36	12	38	17
CCGGAGGTAGTCCGAT	ref_6037_new	25	33	19	17	35	13	31	18	31	8
CACTGGCCCTCATTTA	ref_6037_new	23	40	16	20	38	15	25	8	25	10
CTCTTGCGAGGATTAG	ref_6037_new	38	54	31	33	47	31	35	33	41	19
TGCTCCTCATGTAAAT	ref_6037_new	6	3	2	8	2	1	7	2	4	1
ATAGAAACAGAACCCG	ref_6037_new	1	7	4	5	12	4	5	5	9	2
TCGCAGAGATGAGCTT	ref_6037_new	0	0	0	0	0	0	0	0	0	0
CCGACCCATACGTTAT	ref_6037_new	26	81	20	28	113	11	103	29	87	19
GGATTGGTATCAGCTA	ref_6037_new	0	0	0	0	0	0	0	0	0	0
GAGTCGCTTACTTCAA	ref_6037_new	53	79	64	54	74	46	77	49	72	44
ATAAATGTATCATCAA	ref_6037_new	33	55	46	22	57	39	67	36	48	38
TGCAGCTGGCATGTAC	ref_6037_new	0	0	0	0	0	0	0	0	0	0
TTAAATGCGGCGATGG	ref_6037_new	34	53	35	36	53	40	64	17	58	30
CAACCTCGTTTCTTCA	ref_6037_new	7	10	3	6	8	5	9	3	6	3
TCGCCATAACATTGTT	ref_6037_new	0	0	0	0	0	0	0	0	0	0
TTACACATTCCCGTCG	ref_6037_new	3	72	5	1	61	5	76	7	57	1
CGTGAGCGCTGTTCCC	ref_6037_new	27	60	39	25	67	29	59	36	44	32
TTCTTTCGCTCCTTGC	ref_6037_new	0	0	0	0	0	0	0	0	0	0
TGAGGTTTATTGGCTC	ref_6037_new	103	195	126	95	137	110	204	65	245	86
TTCCAAAGAATGCGTT	ref_6037_new	6	17	9	6	11	7	15	11	9	3
TAAGTTAAAGAAAGCT	ref_6037_new	0	0	0	0	0	0	0	0	0	0
CAGTTCCTTAGGCTTT	ref_6037_new	10	17	16	13	27	7	26	8	15	15
TACGCTTTTGACCCAG	ref_6037_new	0	0	0	0	0	0	0	0	0	0
CAGTTTTCACCTGAGG	ref_6037_new	24	34	24	31	52	19	47	17	46	22
CCCGGGCCTGGGCTCT	ref_6037_new	11	21	9	8	14	6	19	7	22	13
TTTTTTCTCTGTAGGG	ref_6037_new	12	24	19	17	16	10	9	13	9	13
CAGGTATATCCACATG	ref_6037_new	16	40	21	14	27	18	25	7	31	14
CGTCACTTTAATAGTG	ref_6037_new	11	16	18	10	16	7	16	6	26	8
ATCGATAGTCGCGGAC	ref_6037_new	0	0	0	0	0	0	0	0	0	0
CTGATCTACTATGATC	ref_6037_new	0	0	0	0	0	0	0	0	0	0
ATTATTTAAGAGCGGG	ref_6037_new	27	69	51	44	74	33	61	40	65	26
TGATTGCGACGGATTT	ref_6037_new	37	47	24	32	55	28	52	25	63	21
CAAACCTCAAGGCGTC	ref_6037_new	3	11	6	4	10	4	6	4	10	5
GCCAGCATCCAACGCA	alt_6037_new	15	76	22	16	60	17	97	18	92	15
TCCCGCTGGGTGCAAA	ref_6037_new	17	20	10	13	29	16	16	15	30	8
GACCTTGTACTGAAAA	ref_6037_new	7	8	16	2	6	5	6	4	7	5
CCCTCGGCTAGAGCGA	ref_6037_new	49	67	77	59	76	44	80	42	84	44
ACCTCTTCTGAATGCT	ref_6037_new	0	0	0	0	0	0	0	0	0	0
CCGGAGTTGTTTGATA	ref_6037_new	0	0	0	0	0	0	0	0	0	0
TTGGTCCTGCAGTGCG	ref_6037_new	24	49	39	18	51	27	51	26	65	22
GTATTGGTAAAGATCA	ref_6037_new	0	0	0	0	0	0	0	0	0	0
TCGCTTTGTGAGTTTG	ref_6037_new	69	164	113	76	116	79	157	68	165	63
CATTCTAACTTCATCG	ref_6037_new	100	189	99	90	153	95	179	61	174	71
ATGACAAGATCAAAAA	alt_6037_new	48	62	72	42	99	55	68	43	96	30
CAAAAATGGCCTTTTG	ref_6037_new	7	14	12	14	16	8	13	8	15	12
GTAGCGCACCACAAAA	ref_6037_new	2	1	2	1	1	0	5	1	0	1
GTCTGAGCGTCAGGGA	ref_6037_new	0	0	0	0	0	0	0	0	0	0
GTGCATGGCCACTAGC	ref_6037_new	4	6	7	8	11	5	10	6	5	3
CGGTACATCTGTGGGA	ref_6037_new	0	0	0	0	0	0	0	0	0	0
AATATGTAGGTGGTTT	ref_6037_new	0	0	0	0	0	0	0	0	0	0
CCTTTAAGATTCGGTA	ref_6037_new	11	20	19	6	21	7	16	6	16	7
GGTGATATATTTGACG	ref_6037_new	9	16	8	11	21	5	17	12	22	9
CAATCCTGCTTCTAAG	ref_6037_new	0	0	0	0	0	0	0	0	0	0
CACACGTGGTACACCT	ref_6037_new	0	1	1	0	0	0	1	1	1	0
CATGTCCAAGGATCTA	ref_6037_new	0	0	0	0	0	0	0	0	0	0
AACCTGGTTCTATTAA	ref_6037_new	18	33	21	14	30	13	41	14	34	10
TGATTATCTCCGGTTA	ref_6037_new	38	46	37	26	58	26	57	34	43	25
GCTCGCGTTGTTATAG	ref_6037_new	58	131	61	58	124	61	113	54	128	54
GCCTTCCCAGGGTTAT	ref_6037_new	3	9	5	5	6	5	6	5	6	2
CTTTCAGGCTATTTCC	ref_6037_new	18	46	24	22	59	29	62	15	65	15
CGGAACCCGCCCAGTT	ref_6037_new	92	153	132	93	149	94	152	79	179	64
TCGTATGGGTGAGTTC	ref_6037_new	7	11	14	4	22	5	11	14	18	8
TCCGCTCACGGCCCCC	ref_6037_new	0	0	0	0	0	0	0	0	0	0
ATAGATCCTGGCAATA	ref_6037_new	3	9	8	2	3	4	9	3	11	4
TTGCCATTACTATGGT	ref_6037_new	14	28	12	9	30	11	28	12	31	15
GCGTTTTTCTACACGG	ref_6037_new	7	16	5	10	14	7	9	7	16	7
TCTGGCAACTCGTAAT	alt_6037_new	33	60	44	34	52	24	67	28	46	38
TTGGTACCGGGTCTAA	alt_6037_new	0	0	0	0	0	0	0	0	0	0
ATGTGTGCGACTTCGC	alt_6037_new	0	0	0	0	0	0	0	0	0	0
TCCTTGTACTATAGTC	alt_6037_new	0	0	0	0	0	0	0	0	0	0
GAATGACGGGGAAATT	alt_6037_new	17	33	18	13	20	18	29	9	31	15
TCTATCACTTAATCAC	alt_6037_new	1	2	2	0	4	1	1	1	4	1
TTACTACCGTACCATT	alt_6037_new	10	30	5	7	10	9	10	6	20	10
TATTACTCATCCGCTA	alt_6037_new	16	21	14	11	39	6	22	13	19	13
TCTTCCCCTCTAAACT	alt_6037_new	11	14	9	8	12	8	25	10	15	6
GGGGTAAATTTATTTT	alt_6037_new	15	26	22	23	38	19	33	28	34	17
GCAGGTAATTGGCAAG	alt_6037_new	15	19	17	16	14	10	10	11	20	13
CCTGGACGGATATTCG	alt_6037_new	14	53	19	23	49	18	80	18	54	16
GGCCAGGTTTGGAACA	alt_6037_new	0	0	0	0	0	0	0	0	0	0
CACATATCTCCCAAAT	alt_6037_new	4	1	1	2	1	3	3	2	3	1
GTAAAAATCAAATCAA	alt_6037_new	11	11	9	3	10	3	10	6	10	10
GTCCGATAACTTATTG	alt_6037_new	52	68	40	30	72	49	73	27	94	37
GGGTATAACGCGGGCG	alt_6037_new	31	39	29	32	68	29	45	48	70	36
GTGACGTCTCTCCAAG	alt_6037_new	13	37	23	36	27	31	39	15	39	20
CGCGCTGTATGTAAGG	alt_6037_new	20	51	42	26	61	32	43	24	48	19
CCGTTTCGTACTAACC	alt_6037_new	33	124	33	33	140	20	152	24	143	21
GTCGCACTATCCTGAG	alt_6037_new	0	0	0	1	1	1	0	0	0	0
GCTGTTAACTCTTCAG	alt_6037_new	4	4	5	5	11	8	6	4	9	7
GGACACGTTTTAAGAT	alt_6037_new	17	22	18	17	26	13	27	11	18	15
GTTTTTGACGTTATTA	alt_6037_new	16	41	19	10	17	10	21	13	26	15
GACATACGACGGTCTT	alt_6037_new	3	5	4	3	9	7	8	5	9	2
TTGGGTGAGATCTGTA	alt_6037_new	26	92	49	32	56	47	68	29	89	35
GGGCAGCGTGTTATGC	alt_6037_new	7	8	6	7	18	7	23	4	14	6
ATTCCTATTACTGGCT	alt_6037_new	137	278	153	123	210	127	239	127	255	105
TGTTCACGTTATTTTC	alt_6037_new	51	102	69	64	90	41	105	55	124	44
CACATATTGCTTTCAG	alt_6037_new	9	22	10	4	22	4	18	11	25	16
ATGAGTCTCGCCGTGC	alt_6037_new	11	31	11	11	25	9	35	11	21	11
CATGATGGGATAAACT	alt_6037_new	74	85	96	79	102	85	107	48	120	53
TGTGGAGTTCGTTAGC	alt_6037_new	29	45	28	20	28	22	42	22	47	22
CGATTTCTTACTACGC	alt_6037_new	0	0	0	0	0	0	0	0	0	0
TTGCTGGAAGTTCCTC	alt_6037_new	31	67	24	34	53	31	46	18	64	27
GCTCTACATAGGCATA	alt_6037_new	7	7	6	7	14	4	6	3	12	1
CACTGGGCGATGACAA	alt_6037_new	7	13	10	14	16	7	21	11	18	12
GCTCACTCCTTTGGTA	alt_6037_new	8	28	6	1	31	2	33	12	41	3
CCAGTTTCCCCGCGCT	alt_6037_new	4	4	8	5	11	7	7	5	4	5
CACACACAATCGTAGG	alt_6037_new	5	7	5	7	10	1	11	3	6	3
CTTGTAATTTCTAGTA	alt_6037_new	10	12	10	8	17	13	8	2	13	6
GACGTCGAATCCCCTT	alt_6037_new	39	74	43	43	88	31	60	38	84	43
TCTTGTGGCTCTCCAA	alt_6037_new	41	92	49	31	78	35	89	35	74	31
GTCTCATACTTTACGC	alt_6037_new	0	0	0	0	0	0	0	0	0	0
ACAGTTTGCCTCAGCA	alt_6037_new	0	0	2	1	1	2	0	0	0	0
TCACAGGCAAGGGCGG	alt_6037_new	0	0	0	0	0	0	0	0	0	0
TCCCTATGCCGTCCTT	alt_6037_new	11	26	13	5	20	8	22	8	17	8
TCTGCGCTATAGCTTA	alt_6037_new	12	24	18	16	26	11	31	19	32	16
ATGGATATCTCGCGGG	alt_6037_new	2	1	1	0	1	1	2	0	8	0
TCCTGATATTTCATCG	alt_6037_new	0	0	0	0	0	0	0	0	0	0
CACCGCTAACTGCCTT	alt_6037_new	16	63	16	17	57	9	55	16	51	17
AGCCTAAAGTTACGCT	alt_6037_new	0	0	0	0	0	0	0	0	0	0
GTGTTATCGCGTGCTT	alt_6037_new	0	4	6	2	7	4	1	4	1	2
CTGAGTAATAATCATT	alt_6037_new	40	70	38	53	59	29	80	42	75	43
ATTAGTGTATCTTTTT	alt_6037_new	0	0	0	0	0	0	0	0	0	0
CGTGGGCATATTTGCC	alt_6037_new	8	12	10	14	23	12	18	10	25	6
CTTATGATATGATCGG	alt_6037_new	0	0	0	0	0	0	0	0	0	0
TTAGTGCCACGTGGGC	alt_6037_new	42	69	54	62	68	51	79	33	83	43
TTATGTCGCGTTGGTT	alt_6037_new	50	120	62	53	115	67	126	53	148	53
GCATTACGCGACCTCT	alt_6037_new	27	55	30	31	43	32	34	30	48	16
GCCATGCTGCACATAG	alt_6037_new	29	61	31	34	86	28	81	27	64	35
ATTGATGAGAGTCCTG	alt_6037_new	10	10	6	13	8	2	13	4	19	12
TTGCTTAATCGTAAGA	alt_6037_new	8	17	11	6	12	8	16	5	12	7
GCTGCCGTGCGAAGGT	alt_6037_new	7	17	6	7	16	8	9	7	14	4
TCTTGCCATTACTGCA	alt_6037_new	6	10	9	5	7	4	10	7	20	8
CTCTCCCGATACCGCC	alt_6037_new	0	0	0	1	0	0	0	0	0	0
TACGGTCCACATTTTT	alt_6037_new	7	8	4	5	18	6	24	6	12	2
CTAGGCTAGGTAGGAA	alt_6037_new	0	6	0	4	4	4	5	4	6	2
CCCCAGTAGTTTACTA	alt_6037_new	0	0	0	0	0	0	0	0	0	0
TTATGTAATAATTCCT	alt_6037_new	29	38	48	39	73	24	50	28	73	26
CTCTGGAGTGTTATAG	alt_6037_new	0	0	0	0	0	0	0	0	0	0
CGAGTTGCTTGGTCTA	alt_6037_new	2	3	5	0	2	0	3	1	6	1
TGTATACACGGTGGTC	alt_6037_new	17	52	43	16	43	18	48	23	59	18
GAGGAATATGCTCATA	alt_6037_new	76	111	66	75	145	80	115	59	167	74
CGGATTTCTCAGATGG	alt_6037_new	19	24	26	26	27	15	35	19	25	15
GTTTTGAGCCCTGCTC	alt_6037_new	1	1	0	0	0	1	2	0	0	1
CCTGTGTGTTGTGTGT	alt_6037_new	0	0	0	0	0	0	0	0	0	0
ACATGTTTCAGCTGTT	alt_6037_new	12	18	5	4	12	4	18	10	12	7
CTTCCCTTGTCGGTAA	alt_6037_new	34	51	33	31	49	17	62	23	66	29
TCCATTGGGGGATCAT	alt_6037_new	69	79	73	69	88	64	108	43	103	50
TATCGTTGCTTATGTA	alt_6037_new	25	56	31	30	55	24	54	22	61	26
AGATGACTTCCTAGGG	alt_6037_new	11	17	16	12	15	9	13	7	9	12
TTTGACGCGAGAATTA	alt_6037_new	18	34	15	15	26	13	19	14	33	14
GGTTGTGCTACTGTTG	alt_6037_new	2	14	3	0	6	0	13	5	9	3
CAGCTACATTCCTGCC	alt_6037_new	0	0	0	0	0	0	0	0	0	0
TCGAGCCTGTACAGCG	alt_6037_new	16	42	22	18	27	10	30	17	44	15
CTCCATCTCCCGATGG	alt_6037_new	18	39	20	20	38	17	46	11	32	22
CATTACCATTGTCCCA	alt_6037_new	0	0	0	0	0	0	0	0	0	0
TTGCGCCGCTGTGTTT	ref_3406_upstream	85	86	83	75	120	72	99	81	98	66
TTCCCCCTCAGCATGC	ref_3406_upstream	21	35	29	26	41	14	33	17	49	16
CTGTTCCATCTTTAAG	ref_3406_upstream	4	24	13	4	12	7	20	10	13	9
TACTTACGCGGACCGC	ref_3406_upstream	5	13	7	3	14	1	12	4	11	3
CCGGTCAACAAGCTGT	ref_3406_upstream	51	88	71	36	88	56	81	47	69	51
CATAAGCACTGTCGTT	ref_3406_upstream	11	19	15	5	22	10	23	4	10	4
TAAGCTATTGAACCCT	alt_3406_upstream	33	52	41	40	52	25	69	31	46	26
AATATTGGTTAATTGT	ref_3406_upstream	491	677	704	575	671	520	728	495	682	430
CGATGTTTTTGATATA	ref_3406_upstream	62	58	66	71	86	82	64	60	74	50
GCCTGTACTACTAAAT	ref_3406_upstream	34	32	39	37	38	23	51	27	45	24
AAAGGTTGAATTAATA	ref_3406_upstream	69	71	92	82	85	66	102	67	80	72
CAGTTTGGGGACGTTA	ref_3406_upstream	29	49	34	29	49	30	42	28	41	37
ACAAAATTGTTCGAGT	ref_3406_upstream	21	13	21	22	17	9	30	23	16	11
GGTCATTCTTAAGTCA	ref_3406_upstream	7	15	14	12	22	8	23	12	18	16
TAGAGGGAGTGGTCTT	ref_3406_upstream	9	10	14	5	10	9	8	8	7	4
ATACACAGTTCGTTTT	ref_3406_upstream	32	45	36	32	38	21	40	45	30	34
ATCAGGTCGGCGACTT	ref_3406_upstream	7	7	9	4	7	4	18	1	7	6
GAGCAAAATCCCATGG	ref_3406_upstream	43	76	64	56	34	39	58	34	50	48
TTAGGACTCAGTAACA	ref_3406_upstream	41	61	50	40	58	33	70	45	62	41
TTGGGCGTCCGGTACT	ref_3406_upstream	35	45	53	24	35	45	51	44	46	29
ACTTATAACCACGAGG	ref_3406_upstream	42	75	63	56	77	47	72	33	79	60
GTTTCTAATTGTGACA	ref_3406_upstream	30	46	38	35	61	32	57	30	56	23
GGTAATTGCATCTGTC	ref_3406_upstream	10	11	14	6	16	7	13	5	9	8
CTCATCCCAATAAGTT	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
CAGAGTCTTCCCCAGG	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
GTCAAACGGCTAAATC	ref_3406_upstream	20	15	28	14	20	16	24	15	30	12
GTTAACTTATCTTCGG	ref_3406_upstream	15	13	17	8	17	4	18	7	8	9
ATTTTCAGCTTCTAGC	ref_3406_upstream	19	29	22	19	27	18	37	17	24	16
CTGTGGTAAGTGGGTA	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
CCTCATGTGGGAGTTA	ref_3406_upstream	29	37	31	29	40	21	39	22	37	29
GTTCCGCACTTTCCAC	ref_3406_upstream	17	16	15	13	20	11	18	17	31	18
CCCTGGCCGATTATTC	ref_3406_upstream	24	45	35	23	41	37	34	25	48	23
ATTAGGCCACGGTTAC	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCCAATCGTGTTC	ref_3406_upstream	44	67	67	56	55	59	82	48	93	41
TTGCTACTGTTGTGTG	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGCACGTCGGTAT	ref_3406_upstream	26	31	34	30	25	25	26	37	33	20
ATCTGGCTTTGCTTTG	ref_3406_upstream	35	36	13	24	37	20	28	28	23	28
CATACAGGCGCCTCTG	ref_3406_upstream	64	82	79	99	84	65	96	61	93	84
ATTGGTCAACGACTCT	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
GATGGGATGCATTAGG	ref_3406_upstream	9	10	9	1	8	5	12	11	10	3
ACGGAGACGCTCAGAT	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTTCATGTCAGGC	ref_3406_upstream	9	14	19	18	14	18	22	6	23	9
GTTTACGTTTCAGTTA	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
GAACGGGAAAATGCAC	ref_3406_upstream	13	26	28	17	21	23	17	11	24	14
CGTCAACCGCTACATG	ref_3406_upstream	13	73	27	16	87	8	70	13	69	15
TAATTCCGGCCGCAAG	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTAGTGTTATTAC	ref_3406_upstream	36	46	45	26	31	23	63	37	36	38
AGTTGCATCATTTCCG	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCTTCGTGAGGAC	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
TCATGATGATTGTGTG	ref_3406_upstream	33	44	34	25	34	26	47	30	52	34
TGCTGCCCGGTATTGT	ref_3406_upstream	7	3	5	3	7	6	5	8	6	4
TCGGAGACGCTCAGAT	ref_3406_upstream	67	77	80	68	87	48	99	66	92	62
GAGACTATATCCGGAC	ref_3406_upstream	11	8	10	10	11	7	15	3	14	6
GTTTCTGTGTCGCTTA	ref_3406_upstream	33	48	38	30	42	29	42	22	38	22
GCCTGGACAGTAGGTT	ref_3406_upstream	14	26	23	20	32	26	33	18	24	22
TACTCAGGGGCCCGTC	ref_3406_upstream	30	51	28	29	41	25	42	24	41	21
TATCTCCGTCGGATGT	ref_3406_upstream	18	57	29	15	63	19	67	21	68	23
GGACCCCATAAAAAAG	ref_3406_upstream	1	0	0	0	1	2	0	0	3	2
TTACTACTGTAGCCTC	ref_3406_upstream	18	24	20	19	23	8	21	11	18	16
GTGTGTCTGGCCCGAA	ref_3406_upstream	12	19	20	16	15	14	31	15	17	14
ATTATTTTGGTGGTCT	ref_3406_upstream	7	11	11	11	11	5	13	12	13	7
GCCTAGATTGGCACCC	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
CTCACTTGGATCCTTG	ref_3406_upstream	24	32	44	31	31	24	42	28	32	22
AACTGCACTTTGGACT	ref_3406_upstream	35	36	30	17	50	39	37	21	40	17
GTCTCTGGATCCATCT	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGACTGTCCACCT	ref_3406_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTTCGTGCTTCGT	ref_3406_upstream	15	19	10	13	21	18	28	14	19	16
TTCTTAGTGCCTTTCG	alt_5806_new	14	17	12	12	13	11	29	8	24	12
TCTCCTTGCTACTATT	alt_5806_new	14	23	10	11	24	15	14	12	20	5
GCTTCGAAGTTGCGCG	alt_5806_new	9	18	13	13	17	15	20	24	10	9
TTGTAGTCATGACTGA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
GATCTATTCATACACT	alt_5806_new	6	8	3	9	17	5	8	8	8	5
CTCTCTTGGTTTATTC	alt_5806_new	131	122	142	145	147	152	162	135	174	123
TTGATCTACCTGCTAA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
GAGTGGCGCTGTGAGT	alt_5806_new	7	9	1	4	10	2	5	10	8	5
ACCTTAATACCCTGGT	alt_5806_new	30	43	35	23	46	24	40	22	41	38
GGGACCCATTGAGTTT	alt_5806_new	1	1	2	0	5	3	5	2	1	0
ATTAGCGCGCAACTTT	alt_5806_new	0	0	0	0	0	0	0	0	0	0
CTCCGTTCCTACTATT	alt_5806_new	13	12	15	11	15	15	13	13	10	9
CATGACCATTTCTTAA	alt_5806_new	51	54	36	31	56	38	49	35	46	37
ATCCGTCACAAGTACC	alt_5806_new	17	17	22	24	38	25	31	19	24	23
CAATTGGACTGCCATA	alt_5806_new	33	48	42	35	43	35	55	26	55	27
ACGCATCTTCGCCCGA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TTCGGGGACTACAATC	alt_5806_new	43	43	61	53	47	39	48	36	49	34
CGGGGTAGTTACGATA	alt_5806_new	10	24	2	14	13	7	11	10	15	10
TGATCACTGCACTTTG	alt_5806_new	27	40	34	31	34	29	47	36	35	40
CATTTAAAACCATTAG	alt_5806_new	0	0	0	0	0	0	1	0	0	0
GCATACCATCTTCACT	alt_5806_new	5	20	8	4	20	6	19	10	21	8
CATATTACATACCTGA	alt_5806_new	0	0	0	0	4	0	2	0	2	1
GCGGCTTCCACAGGTC	alt_5806_new	72	86	77	60	95	74	69	50	78	51
CGCGCCTACGGGTCTT	alt_5806_new	12	23	12	23	22	15	21	9	14	11
GGCTGCGAAATCACGT	alt_5806_new	59	39	50	36	46	38	61	39	56	29
TAGACCCTCTGATTGC	alt_5806_new	0	0	0	0	0	0	0	0	0	0
GCGGCCCGTGTTGAAT	alt_5806_new	4	29	7	10	35	5	20	2	15	7
TCGTAGGCACGAATCA	alt_5806_new	5	4	3	1	4	3	5	7	4	2
ACATGTATTAATGCCG	alt_5806_new	2	4	9	6	7	6	19	7	10	4
CCTTTGGTGTGAGTAT	alt_5806_new	27	28	27	18	46	22	36	19	43	28
TGTTAGTTTATTCAAT	alt_5806_new	20	24	25	20	15	18	28	19	19	11
TATCCTTAACTGATTT	alt_5806_new	34	29	37	27	45	28	40	19	35	24
TTCCAAACCGGCTCAA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
ATTGTTTTGATGATAG	alt_5806_new	28	16	17	15	25	22	25	12	19	21
GTTACATTTTCATAAT	alt_5806_new	49	41	40	38	50	38	53	34	51	29
CAGCTGACCGCTGTCG	alt_5806_new	1	0	0	1	1	0	0	1	1	0
GATGGTGCCCTGCTAT	alt_5806_new	12	12	8	7	15	12	22	7	15	11
GCCAGTTATGCGATAA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
GTTGAGAGCGGCGGTG	alt_5806_new	21	20	23	23	22	14	16	19	24	20
GGCTTCCTGGCCGTCA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TTCGCATTCACGGCTA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
ATCGCTGGGCTTCTCG	alt_5806_new	10	17	11	7	12	11	11	10	22	17
GTTTTGTAGCTAGTAT	alt_5806_new	18	9	7	7	7	1	5	8	4	6
CGCGATCTTGAGCGTA	alt_5806_new	11	9	9	10	3	10	11	6	9	6
ACTTCAACTATATTAT	alt_5806_new	93	102	111	87	91	64	124	82	113	67
CCTATTCCCTGTAGGT	alt_5806_new	2	3	1	5	4	1	3	4	2	1
CATGCAGCTTATCTTT	alt_5806_new	9	13	10	8	6	6	12	9	8	9
TAAGGGAGTCAGACTT	alt_5806_new	11	5	11	10	8	8	12	14	12	13
TCAGATCATGTGTCTG	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TTCGTGCATTATAACG	alt_5806_new	5	11	4	15	21	7	16	11	12	3
CCTGTCCAAACACTGT	alt_5806_new	2	6	3	0	1	0	2	2	3	3
GTCCGTCTGGGGTAAG	alt_5806_new	0	0	0	0	0	0	0	0	0	0
ACAAATTGTAACTAGC	alt_5806_new	2	4	0	2	1	1	9	2	3	5
CAGCCTTTATGAAGTA	alt_5806_new	4	13	11	6	10	4	8	3	6	1
CAGCGCGGACTTCGTC	alt_5806_new	1	1	3	1	9	1	5	5	1	3
CGTTGTTAATCATTTA	alt_5806_new	13	15	22	13	31	24	20	19	16	9
TTCGAGACGAATAACC	alt_5806_new	96	129	134	101	141	88	129	105	145	86
ATGTCTTTCTATGTGG	alt_5806_new	19	29	11	10	23	12	30	10	22	19
TCTCGATCAGGCATAA	alt_5806_new	29	29	46	35	42	29	42	27	33	29
GCCCGAGCGCGGCGGG	alt_5806_new	45	66	45	49	84	39	81	41	72	42
GCTTCCTTCGCAAGCT	alt_5806_new	5	10	8	6	6	7	7	5	2	7
ATAGGGATTGCGGTAT	alt_5806_new	8	17	12	27	28	10	17	11	31	15
TAATAGTTCAAGGGTG	alt_5806_new	12	9	9	5	5	5	8	5	9	3
CATTAGTTAACATAGC	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TGCGCCTTAGACTTCG	alt_5806_new	10	21	16	16	13	9	15	13	16	17
GCACATACTACTTCTG	alt_5806_new	31	49	53	30	29	35	28	25	45	27
AAGATAATAATTGGTT	alt_5806_new	26	41	33	38	29	34	30	27	38	25
GTGAAGGCACACTAGA	alt_5806_new	7	7	7	4	12	5	5	5	10	4
TCGGAAACGCTGGTGT	alt_5806_new	44	73	77	41	78	55	80	52	107	60
ACATTATGGCAACCTA	alt_5806_new	8	6	4	5	4	4	9	6	3	4
CATATTGAAAGGTTGA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
CTTAGAGTTCCTTCAA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TACGGGGGCAGTACCT	alt_5806_new	40	32	44	31	30	28	42	35	52	28
TGAAAATCCTTGTAGG	alt_5806_new	0	0	0	0	0	0	0	0	0	0
ATATGGTCCCGTTGAT	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TTACTGGGGACTGTAG	alt_5806_new	19	29	16	14	27	17	35	16	19	19
AGTAATATCAGGCGAC	alt_5806_new	14	17	20	18	19	14	20	18	16	13
CACTCTTTGTTCTTTC	alt_5806_new	5	11	12	13	5	9	15	9	11	4
TCCTCAGTTCTATATC	alt_5806_new	1	3	0	1	2	0	2	0	2	1
AATCTCATAGATCGGG	alt_5806_new	47	47	42	35	57	52	44	44	49	54
GACTGTGCTTTTGTGT	alt_5806_new	18	18	11	13	14	10	17	9	18	12
CCCTGGCTGACGTGGA	alt_5806_new	27	47	33	24	37	28	46	24	64	18
TCTGCACATTAAATCT	alt_5806_new	13	23	16	15	23	11	15	7	18	16
CGGTTAAGGCCAGTGT	alt_5806_new	1	13	3	7	12	5	12	1	8	2
TCCCAGAATGGTTAAA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TGTCCGGAGCAATCGC	alt_5806_new	13	20	19	9	27	19	27	9	21	10
CCTTTAAAACCATTAG	alt_5806_new	117	145	121	104	142	102	148	117	117	95
TTCTCTGTCTGCTAGT	alt_5806_new	1	15	8	9	17	8	19	5	11	7
CTGAACCAGCCGTCCA	alt_5806_new	30	48	53	24	50	22	46	40	41	34
ATCTGCAGCCCTCACC	alt_5806_new	6	3	6	10	8	8	9	10	12	6
CCTGATAGCCGGGTTT	alt_5806_new	12	15	15	11	25	11	18	11	21	11
CGGTAAATTAGGGGTG	alt_5806_new	0	1	3	1	0	1	0	1	3	3
CACTTCTTCCGTACGC	alt_5806_new	14	26	19	15	27	14	11	6	21	9
TGTTTGCATTTCCCGG	alt_5806_new	0	0	0	0	0	0	0	0	0	0
GGGTAAGCGTTGCAAC	alt_5806_new	0	0	0	0	0	0	0	0	0	0
CAGGAAAGCCCTAGAC	alt_5806_new	7	18	14	5	6	5	15	9	17	11
ACTCAAACTTGGACAA	alt_5806_new	6	5	3	3	3	3	4	5	2	0
CAGGTTACTATTTGCT	alt_5806_new	25	56	42	42	53	32	69	21	64	22
CTTAACACTCTTATAG	alt_5806_new	44	89	44	49	66	34	73	44	80	40
TCTCAGTGCCGAATTA	alt_5806_new	7	19	31	13	24	23	22	25	15	10
AATCAACGGACCCTTG	alt_5806_new	18	19	15	22	33	15	25	18	23	16
GTAGTCCAACCTAAGG	alt_5806_new	62	122	83	80	92	75	95	70	133	63
GATTTCGTTCGTTTAA	alt_5806_new	0	0	0	0	0	0	0	0	0	0
AGTTCTTTGCTTCCGC	alt_5806_new	14	23	22	16	13	17	29	15	30	13
GTGTTCCATCGCCCCA	alt_5806_new	1	8	6	4	6	2	6	3	8	4
GTCAACCAACAGCTCT	alt_5806_new	5	6	19	6	37	13	19	10	17	14
CGTATTTGCGGATCTG	alt_5806_new	0	0	0	0	0	0	0	0	0	0
CAGCGTAACAATAGTT	alt_5806_new	0	0	0	0	0	0	0	0	0	0
TGTCTTGTATCTAGGC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
AAGTATTGTCCGGCGC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TCTAGGAAGCGCACCG	alt_5808_new	54	69	69	47	82	46	75	45	75	43
TCTTTGCGTTTCCCAA	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TGTACACCTTCCACTG	alt_5808_new	14	20	11	6	15	10	12	13	20	9
ATCGAAATAAGGTCTT	alt_5808_new	41	49	44	59	66	36	52	40	66	45
CAGCATCATATATGAG	alt_5808_new	18	30	21	27	30	16	39	17	42	24
GACTCCGCTAACCTTC	alt_5808_new	0	0	1	0	0	0	2	0	2	0
GAAAGATGTTTTTTAC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CGAATCGGCCCGCAAG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
GGTGAGCTCGAAAGCG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CCTCCTAGTTGGAGCT	alt_5808_new	14	21	21	12	31	21	26	18	33	14
CAATCCATCTGCGTGC	alt_5808_new	9	38	9	7	49	4	32	7	37	7
CATGGTTTCCGTTACA	alt_5808_new	28	20	27	28	35	24	46	23	41	21
CTGTGGGCCCTTGTCC	alt_5808_new	16	21	28	16	26	21	17	10	30	17
GCTTAGGCATCGGCCG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CGTCCGCGCAATGTCT	alt_5808_new	23	38	38	37	34	20	58	20	53	28
GCAGGACAGTCTTATC	alt_5808_new	31	56	47	39	53	33	61	37	48	23
TAAGGATGTGAAATTG	alt_5808_new	180	277	259	196	309	202	319	188	321	164
AGTAACCATTTATCCT	alt_5808_new	30	35	32	27	31	14	30	21	28	26
GTGATTTGACCCGTTC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TCTGTGGGGTCTCAGA	alt_5808_new	9	8	15	17	19	9	16	10	9	8
CTTGAGCGCTATCCGA	alt_5808_new	5	9	6	3	10	5	15	5	22	4
AGGTTTAGCTTAGTCA	alt_5808_new	52	70	53	49	91	35	88	39	88	58
GGTAGTACTGGATAAT	alt_5808_new	4	3	1	3	6	1	10	3	8	6
GACTTCATTAACGTGC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CTCCGGAATAAACGTT	alt_5808_new	0	0	0	0	0	0	0	0	0	0
AGAGTTATCGTCAGCT	alt_5808_new	2	3	1	1	6	2	1	3	3	2
TTTCGATCACCCGAAA	alt_5808_new	5	10	11	6	10	5	9	5	4	6
GTTAATCCGTACAAAA	alt_5808_new	53	53	60	49	64	47	71	43	90	61
ACTCGGTTCTGGGTTT	alt_5808_new	22	18	27	18	29	27	37	27	28	18
ACCCGGCTTTAGCTTG	alt_5808_new	22	31	26	22	23	26	28	17	35	13
TTCATGTTGGGGTCAT	alt_5808_new	24	33	23	22	41	24	37	29	40	24
GGCTGACCGCCTCTCT	alt_5808_new	11	15	13	15	18	19	20	18	24	8
GTCGCTTGCCTAGCGA	alt_5808_new	27	47	29	42	57	43	44	23	39	37
TCGCGTGGTCAGTTGG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
GACTTCGCTATAGGTC	alt_5808_new	24	33	30	14	43	24	22	22	22	19
TTCCAAGCCTCGGCGG	alt_5808_new	21	27	9	14	20	15	43	19	30	12
AATGCTACCGAAAACG	alt_5808_new	36	58	44	46	60	43	56	36	75	41
CATCTTCTTGTACCAC	alt_5808_new	7	20	12	11	19	1	23	5	28	6
TCTCACAAGATAATTT	alt_5808_new	2	10	4	4	7	4	3	7	5	3
AGGTCGGCCGTCCTGG	alt_5808_new	63	73	88	58	69	72	114	74	110	50
CCATTTGCTTGTTTGA	alt_5808_new	17	27	20	16	23	21	24	22	25	16
GTGAATAAAGGTAAGC	alt_5808_new	60	71	80	59	56	46	67	71	57	43
GTTTTCTTCTCAACTA	alt_5808_new	37	58	43	33	51	34	70	48	77	35
AATTCATACGCCGCCT	alt_5808_new	70	74	64	46	87	46	71	69	90	55
GAGTATAGCTGGGCCT	alt_5808_new	13	20	19	18	22	11	27	17	28	17
TCACGTCCTTGTACCT	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TGGTTGCCCATTGGAA	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TTGTTATACATAAGCG	alt_5808_new	7	6	7	11	14	7	16	2	10	3
TTTTTCCCAAGTTTCG	alt_5808_new	59	110	80	65	109	58	98	75	97	50
CCAAACTTCTCTAGCC	alt_5808_new	73	99	70	79	100	62	108	50	101	57
TTTAATGCTTCTTAGA	alt_5808_new	9	26	9	12	15	16	21	9	28	8
GTGCTGAGTCTTGGCC	alt_5808_new	22	35	29	15	24	19	33	14	36	14
TTCGGCTCAATCCGGA	alt_5808_new	0	0	0	0	0	0	0	0	0	0
AGTAGTGTGCCGCGGA	alt_5808_new	13	15	19	16	13	7	14	5	13	9
TGGAGGCATAAGATGG	alt_5808_new	24	33	48	34	25	37	34	31	34	27
TCCTAAGGCTCTTCCG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CCAACGGAGGCTGAAG	alt_5808_new	19	27	26	15	33	19	24	19	19	23
TTGATTTGTCTCTTCC	alt_5808_new	111	172	137	144	193	102	168	128	169	98
TTGCCAGTTGCAATGC	alt_5808_new	4	13	14	14	19	7	17	11	20	9
ATCGGCCTCGGCCGAC	alt_5808_new	46	99	65	66	105	52	111	57	113	49
CATCATTGTTCTTGTC	alt_5808_new	6	10	4	20	13	12	6	15	14	14
CACAAATGAGACTGGT	alt_5808_new	30	28	18	28	24	21	37	18	30	11
CGCGGTAAACGAATAG	alt_5808_new	110	142	121	107	149	103	148	81	183	99
CGGCGTCATATTGCAG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
ACTCAGTCAAAATTTC	alt_5808_new	76	153	132	104	162	91	173	78	165	87
ACTGGCGCTATTGTTG	alt_5808_new	19	32	20	14	31	22	26	9	26	19
AGTTTTTCGTGGTTCC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TACGATTCTGTTGAAT	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TAACCGGTAGTAGACT	alt_5808_new	29	24	31	28	35	22	47	19	46	17
CGTTTCAATGCCGGAG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TGGGTTCGAGGCTTTT	alt_5808_new	32	47	37	27	41	38	44	26	54	36
CATGGCCTTAGGTGGT	alt_5808_new	36	44	32	36	66	28	49	28	64	32
GGTCTATCAACTATAA	alt_5808_new	51	93	76	65	93	40	77	61	95	49
TCATGGCCGGTCTCTA	alt_5808_new	32	33	20	25	29	26	32	15	45	27
TTGTAAGGTATTTTTC	alt_5808_new	4	0	4	3	7	1	4	0	2	2
TATCGGGCTTCGCTTT	alt_5808_new	3	7	9	3	6	5	3	4	5	5
GCAATCACTAATAAAC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
GCCGCCCGTTCTCATC	alt_5808_new	25	29	29	28	26	24	23	27	25	20
CTCGGTCGCCGTAACA	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CGATATAAGGTAAACG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TTAATTTTCATTAATC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CCTACACGTGCTCTGG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
GTAATATCTCATTCGT	alt_5808_new	40	57	60	43	75	46	47	48	62	36
CCCCACGAATGTACCC	alt_5808_new	29	35	31	29	34	26	28	28	33	30
CTGTTCTGTTGCCTTC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CAAGGTAGATAATGCA	alt_5808_new	19	48	36	24	42	22	40	12	50	29
GTCATTCGGTGTACCA	alt_5808_new	0	0	0	0	0	0	0	0	0	0
GCTATCGCACTACAGG	alt_5808_new	22	22	27	31	38	23	25	19	24	18
CCCCTGGATCAGCCCT	alt_5808_new	38	43	25	31	23	30	43	25	60	24
GTCTTACTGTATTCTA	alt_5808_new	0	0	0	0	0	0	0	0	0	0
AACGCACCCCTTCGGG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CGGGGCCCTAAGCGTC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
CATTGAAGGTTGTGTT	alt_5808_new	9	18	10	8	9	8	13	9	3	5
TCGACTTAACTGCTTC	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TCTGCAGTTTGATAAG	alt_5808_new	85	113	95	66	114	85	121	75	136	64
ACATAGCAATTCGCTG	alt_5808_new	67	117	96	77	101	62	105	79	94	75
GGGTGGTCCCATTTTC	alt_5808_new	35	42	48	37	49	23	36	38	52	26
ATCGCCACTTCTGTTA	alt_5808_new	91	157	118	117	202	92	197	120	208	86
ACATCGCGTGGGTTGT	alt_5808_new	14	28	22	28	24	15	29	19	21	13
GCGTGATGTCTGCTAG	alt_5808_new	14	14	22	5	28	16	24	13	21	20
GTATTTTCGCCCGGCG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
GAGTCCGGACTAATTT	alt_5808_new	1	2	0	2	1	2	0	2	0	0
ACTTGTGTTACTTTAG	alt_5808_new	6	14	12	6	20	7	15	5	9	9
CTCTTTCGCGTATCAG	alt_5808_new	25	27	17	16	30	24	47	12	38	16
CGCACTATGAACGGTA	alt_5808_new	0	0	0	0	0	0	0	0	0	0
ATTGGTCTCTTCTATG	alt_5808_new	0	0	0	0	0	0	0	0	0	0
TGAACACTTGGCGCTG	alt_5808_new	11	12	8	12	12	15	14	11	18	16
AGGAACACGCAAAGCG	alt_5808_new	4	3	11	4	7	2	6	3	9	0
TACCGGATCATGCCGT	alt_5808_new	1	8	3	5	17	10	20	6	6	2
AGCTCACGTTCTTGTG	alt_5805_new	26	22	19	28	29	18	29	16	32	17
ACCATTGATGCTTTGC	alt_5805_new	0	0	0	0	0	0	0	0	0	0
ATGTTGTCCGGCGAGA	alt_5805_new	64	91	89	56	112	60	95	67	68	55
GGCGTCGCACAGTTAG	alt_5805_new	16	12	17	14	16	14	16	14	22	18
GTCATGCGTAGGCTTC	alt_5805_new	0	0	0	0	0	0	0	0	0	0
TATGGGTGTAAGGTTG	alt_5805_new	0	0	0	0	0	0	0	0	0	0
GAATTCAGACCGGGGT	alt_5805_new	0	0	0	0	0	0	0	0	0	0
ACTCTCACTCGGGACG	alt_5805_new	0	0	0	0	0	0	0	0	0	0
CCGAAATTGAGCCAAA	alt_5805_new	0	0	0	0	0	0	0	0	0	0
CCTTCTGTGTTCCTAA	alt_5805_new	51	58	48	67	71	60	60	43	57	50
CAGGAGGCTCATTTAC	alt_5805_new	0	0	0	0	0	0	0	0	0	0
GTCAGCGCCCTACCCG	alt_5805_new	14	22	13	13	21	18	26	6	29	15
TTCCTCACATTATAGT	alt_5805_new	324	384	347	301	364	314	397	261	403	285
GAGCCAGTCTCTTCAG	alt_5805_new	0	0	0	0	0	0	0	0	0	0
ATCCCCTCTCGATGAC	alt_5805_new	11	8	19	12	14	7	23	7	16	9
CCGTGCCAGCCATGCA	alt_5805_new	12	3	4	13	2	4	2	4	6	3
TTTTGCGTCATAGCGC	alt_5805_new	14	25	27	19	35	15	34	18	33	15
ACTTACTCTGCCGTAT	alt_5805_new	0	0	0	0	0	0	0	0	0	0
TTTGTAGCGGCCCTGC	alt_5805_new	8	4	5	12	3	4	5	3	11	5
TCAGCCATACTTGTTG	ref_2011_RC	13	27	12	13	24	4	25	6	24	6
GCTTGAATTTCGATTA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ACGCCCGCATTTTCTG	ref_2011_RC	14	19	33	22	16	19	18	25	22	15
GTTGAAGTGTGTATAC	ref_2011_RC	14	6	16	7	15	5	13	12	12	9
GATCGCTTGCCTCCGG	ref_2011_RC	0	4	0	2	2	2	2	0	1	1
GTATACCGCCACAAAC	ref_2011_RC	62	67	83	68	62	65	65	53	73	55
AGTTTCTAACTGATTG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GCGGCAAATTGAACTA	ref_2011_RC	5	8	14	10	10	10	7	15	17	12
ACTTTTTTCGGGTACG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
CTTTTCCAACTATTTT	ref_2011_RC	93	73	114	87	83	86	92	71	75	77
TGGCTCCGAAAATGCT	ref_2011_RC	35	26	51	37	27	27	40	29	28	37
TATAGGTCAGGTTCGT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ACTCGGCCCTATGCGA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TCTCTTTAACGCCCTT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TTGGTCCTTGGAACGT	ref_2011_RC	47	57	72	62	64	49	55	54	56	53
ACAGTTTTTGAAAATG	ref_2011_RC	24	20	27	13	29	15	30	17	18	17
TTTTTTGCCCTTCGCT	ref_2011_RC	14	15	19	18	30	13	17	14	30	13
AAGCGTTATTCACGCG	ref_2011_RC	10	15	26	19	10	7	16	16	10	17
GCATTATACGACCTTG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
CGGGCGCTGAGTTATA	ref_2011_RC	26	18	35	32	29	16	34	25	37	20
TAATTAATATGAGAAT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TCCGCCGGTGGCATAA	ref_2011_RC	65	55	62	50	74	47	66	56	39	50
GTTCGCCTTTTCTGTG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTCATCATGTGT	ref_2011_RC	56	46	64	43	40	31	27	39	40	39
CTGAGATCTTTCTGAT	ref_2011_RC	3	3	8	1	4	10	6	8	8	4
GTGGGTCTTTTAGCGG	ref_2011_RC	37	56	49	34	31	41	51	47	53	41
GATCACGTAGACAAAG	ref_2011_RC	102	93	123	118	94	107	106	84	104	96
ACTCAAATCACCTTGC	ref_2011_RC	23	21	23	6	24	18	28	15	21	17
AGCAGGGGTTAGGGTA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TAATGTGGTTCTAATA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
CAAAGTAAAAATGTTC	ref_2011_RC	62	64	82	78	69	62	57	65	83	52
AGCAGGCATGATTCGG	ref_2011_RC	47	41	51	40	25	31	27	26	33	32
AACTCGTGTTTCCGAT	ref_2011_RC	47	47	79	48	49	45	54	53	45	46
GGTTCATGTAACGGTC	ref_2011_RC	34	46	35	38	38	45	32	33	38	34
ATACCCAGCCCCCTGA	ref_2011_RC	47	51	85	50	50	43	70	52	44	43
TCATAGTTAATAGTCC	ref_2011_RC	6	11	2	7	7	5	7	3	17	6
CGAGTACACTACTACG	ref_2011_RC	22	38	18	19	29	14	43	19	37	20
TTCCCTACGTAGCTCT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TAACGTTATGTCCTGT	ref_2011_RC	64	57	63	56	81	60	54	62	67	50
ATGATACGATCGCCGG	ref_2011_RC	8	9	8	7	4	9	14	3	6	11
TTTAAGTCTAGAACAG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
AAACGTGACTTGGGCG	ref_2011_RC	24	20	27	26	29	27	19	24	17	19
TGCAGCATAAGCTGGG	ref_2011_RC	12	12	22	9	10	10	19	10	7	10
CTGTGCCTCGGTTTGC	ref_2011_RC	18	29	31	23	34	27	40	15	34	20
GAAACAAATGTTACTG	ref_2011_RC	49	41	64	50	45	47	45	51	60	31
TTAAATGCCACCTGAG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGCTAGTTTGTTGGAT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GTCTAGCTAGGGGCGT	ref_2011_RC	1	0	0	0	1	2	0	1	0	1
TTCTAAGAATTAACCT	ref_2011_RC	15	16	16	16	16	10	18	11	12	12
CATCGCGGCACCAGTT	ref_2011_RC	43	53	76	50	40	45	52	60	48	43
ACGGTACGATTCGTAT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGTAATCTTTGGTAGC	ref_2011_RC	76	66	96	81	83	81	82	77	89	65
AATATACAAACGCCGT	ref_2011_RC	1	3	3	1	3	4	4	4	7	2
TATGTATATCCCTGTC	ref_2011_RC	12	14	19	18	17	14	9	12	11	11
TTCTTGGGATCGTTGT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGAGGCGGGTGTCTTC	ref_2011_RC	32	51	39	30	32	27	41	29	36	23
CGCTAGCGCCTTTTGA	ref_2011_RC	13	17	12	12	14	9	13	17	14	12
CAGTTGGTGCTTTTCT	ref_2011_RC	122	141	130	136	141	112	150	114	194	109
CAGTATGTGTTAGGTT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ATTTAGGAATAGATCC	ref_2011_RC	29	36	31	30	22	27	24	22	23	26
CCCAAAAAAGTGATGT	ref_2011_RC	59	76	61	76	91	62	77	68	94	59
CACAATATGTTTTTTC	ref_2011_RC	11	13	14	6	6	14	12	11	7	12
TTTTGAAGATTCCACT	ref_2011_RC	163	177	217	178	182	162	178	180	170	147
TCAGAACTATTATTAC	ref_2011_RC	28	34	37	41	28	30	34	36	34	25
ACCAATTAAGTATTCT	ref_2011_RC	141	194	154	149	218	143	197	135	184	134
CTCCATTAAATGTAGA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GGCACAACTGTAGACT	ref_2011_RC	21	20	18	29	16	11	23	17	23	12
TTAGGCAACACTATTT	ref_2011_RC	1	1	3	2	2	1	3	5	2	2
CACCTTGTACCGGTCT	ref_2011_RC	15	13	18	8	16	18	16	16	16	8
TAGTTGTTTACACTTG	ref_2011_RC	23	27	36	44	28	22	24	24	34	24
TCGGTTTTTTACTCGA	ref_2011_RC	87	142	102	122	102	85	113	79	125	75
GTAACAGCCCGCGCTG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GTCTATGAGCGACCTG	ref_2011_RC	116	105	109	90	84	82	90	61	118	81
ACCGTAGGGTCCCGAC	ref_2011_RC	13	4	16	11	7	10	19	4	14	7
GTGGCGCTTACTTCGT	ref_2011_RC	8	10	8	7	8	10	8	4	8	3
GACGACTGCTCCTGCT	ref_2011_RC	6	2	5	3	4	3	12	4	4	4
GCACATTCGGTTGTTA	ref_2011_RC	25	36	39	18	33	16	26	24	51	26
GCTGCTGGATACGAGC	ref_2011_RC	75	50	82	66	72	78	72	57	85	54
GCCGAGTTGCTCCCAC	ref_2011_RC	41	47	67	47	42	32	44	45	57	49
ATTCTGCTGGGCGGGC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TATTCTAGCTTTTATT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ATCTTGCCCCGCCCTT	ref_2011_RC	27	23	26	18	23	23	27	17	35	18
TCCCAGGGTCTGGCGT	ref_2011_RC	61	46	83	65	75	68	67	48	68	56
CGGGTTGGTGTACCTC	ref_2011_RC	11	15	21	11	12	20	20	15	19	14
GTCATTGTTTGCGCTA	ref_2011_RC	8	12	5	10	14	6	14	5	6	1
ATTTGGACGCGTCACG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TAGTTCTGAATACGGT	ref_2011_RC	32	39	35	16	37	22	38	21	26	28
TATATGCACTCTGCAA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TCTAGCTCTTACGGTC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
CAGTCGCTTAATCATA	ref_2011_RC	24	22	36	22	16	23	21	23	35	18
GTTTCCTAGGGGCAAG	ref_2011_RC	30	32	27	36	43	41	37	26	32	30
GCTCAGCCCGGGGATT	ref_2011_RC	10	15	7	12	10	6	33	8	10	6
CATCTTCCCGGTCTGT	ref_2011_RC	10	13	12	9	11	20	11	11	6	13
GATTGAGCTTGCGTCC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GTCTTAGTCTGGCCGC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
CGGTTCGCCTACACAC	ref_2011_RC	26	29	33	33	47	31	41	26	45	23
AAGTGTACCTTATCCC	ref_2011_RC	5	17	6	1	11	3	10	5	14	6
GCAAGATTTAACTCAG	ref_2011_RC	83	85	93	80	84	57	89	67	76	85
AATTGCCTCGTCTCAT	ref_2011_RC	31	31	40	37	34	26	34	44	40	23
ACCTTAGAGGACGCCA	ref_2011_RC	57	63	68	54	65	60	81	54	69	57
TCTCGACCTCTTGTGT	ref_2011_RC	46	85	84	73	102	79	92	56	89	62
GTCCCTCTCACACTTT	ref_2011_RC	46	62	50	59	50	39	54	48	58	27
TCACTCTGGACTGTCC	ref_2011_RC	8	16	17	5	17	17	13	17	14	9
ATCGAGTTCATCGGGA	ref_2011_RC	108	94	118	110	107	95	118	109	114	93
CTTCTTCGTACTTTTA	ref_2011_RC	5	9	12	4	10	14	11	6	8	9
TCTCGGGTTGGGTATC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TTCAATATTAAGGTGT	ref_2011_RC	90	63	88	77	75	62	68	59	69	60
CTGTTGGCAGTATAAA	ref_2011_RC	31	55	63	46	43	49	62	48	67	34
CAATACGTTCGCTCAT	ref_2011_RC	34	33	22	29	33	39	41	31	32	19
CACCGGGGTCGAAGGC	ref_2011_RC	14	50	19	21	38	13	45	29	38	8
CAAACATCGCCATGCT	ref_2011_RC	14	14	28	23	19	13	13	18	21	21
TTGCCCTTTTTTACAA	ref_2011_RC	41	33	51	33	28	41	45	21	39	32
ATAAACGCGAGTTTCT	ref_2011_RC	13	13	19	11	19	12	19	15	21	13
TTCTCTTGCAAAAGGC	ref_2011_RC	21	18	22	24	13	10	22	16	22	18
CAACCTTCGCAATTCT	ref_2011_RC	7	7	9	7	3	10	10	10	13	14
ACTTGATACGGACTCA	ref_2011_RC	28	30	30	17	19	27	21	26	15	28
ACACTGCATATCTACC	ref_2011_RC	74	89	120	92	100	91	127	65	93	70
AACTTTCTTAAAGGCG	ref_2011_RC	78	75	98	67	75	67	50	58	58	80
GGTACACGTGGATGAC	ref_2011_RC	12	13	11	15	14	14	23	15	6	11
GGACCAGGTTAGGCTG	ref_2011_RC	24	22	29	28	22	14	15	15	21	11
TGGAACCGACTGGATA	ref_2011_RC	75	71	78	102	60	56	79	70	87	62
AATCATCCGATTAGAG	ref_2011_RC	16	13	30	24	12	19	20	24	22	18
ATCGCCGTTGATCCCG	ref_2011_RC	7	11	14	7	12	11	9	10	13	8
AGTATGCTTGTAAAAC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGATCACAGTCCTTTG	ref_2011_RC	22	19	26	26	19	34	16	21	17	19
GTGTTAATCCTCTGGA	ref_2011_RC	65	46	44	43	57	54	64	54	59	33
ATGTACGCGCCAGGGT	ref_2011_RC	27	37	32	27	39	17	39	32	45	30
TGGTTCATTGCGCTGC	ref_2011_RC	52	60	33	41	53	38	51	45	45	38
GCCCGTTAACAGTCTC	ref_2011_RC	27	32	31	34	19	20	33	30	21	22
GCTTGAGTCATGGCCT	ref_2011_RC	37	28	66	43	40	39	51	33	39	38
ATAAAGTAAAGGAAAC	ref_2011_RC	31	48	60	48	55	51	49	52	46	41
GGCAGAGTATAACAGA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ACAATCCATATGTTTA	ref_2011_RC	104	82	126	102	105	106	95	83	97	109
ATGCACAACGGACGGA	ref_2011_RC	27	33	36	26	22	25	30	21	22	22
TTCTGTGCAATTTATG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
CATTCTCCACGTCTCT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GTCTAGTAAGCGACAA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ATTTCTGCTTAAGACG	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGAGAGCGGATCATGC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
GATTGACGGAATCCTG	ref_2011_RC	95	79	108	88	103	86	88	89	99	58
AGTGTTATGCCCCTGA	ref_2011_RC	13	16	14	21	18	7	11	3	16	11
TTTTACTCCCTGCAAC	ref_2011_RC	10	22	11	11	22	16	11	9	33	8
CTCGACTCAGTCGATA	ref_2011_RC	2	1	8	7	4	2	6	3	5	3
TATCGACTGATCCTCT	ref_2011_RC	7	8	4	6	10	3	9	4	17	7
AACCATCAGTGGCGAA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ATCAGAACCGTCTTGA	ref_2011_RC	21	32	34	33	27	23	22	23	27	29
TTCTCCTTTGCTTTTC	ref_2011_RC	11	4	18	18	12	12	14	11	6	10
TTAAACCAATCTTGGT	ref_2011_RC	41	49	63	47	67	55	59	61	59	56
ATCGCACGGCTACTGG	ref_2011_RC	13	9	11	15	9	15	9	14	13	16
CGCGAGATCTTCGTTC	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
ATCATGATCGTCTCGC	ref_2011_RC	27	25	36	19	18	23	21	27	16	27
CTCTTCACAGCCGTAA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TGTCTGATACAATAAA	ref_2011_RC	0	4	6	1	1	1	0	1	2	5
TGGTATCTTGCATGAG	ref_2011_RC	14	20	10	11	8	9	6	14	17	21
CGATTTGCGGAGGGCC	ref_2011_RC	59	71	92	93	67	66	68	67	52	64
TAGTATGGGTAGGCTA	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
TTGGTTTTGCAAGCTT	ref_2011_RC	67	78	78	72	63	80	82	79	103	71
TCCGTGCGCCTGCGTT	ref_2011_RC	0	0	0	0	0	0	0	0	0	0
CGTGGCTTTGCGCGGC	ref_2011_RC	9	14	14	8	12	11	12	7	17	9
CCTCGTCTCGTTAGGT	ref_2011_RC	18	14	23	21	21	10	14	13	29	19
CGTTCGCGTATTGACC	ref_2011_RC	5	10	11	8	15	5	12	7	9	6
GTCGGCTCTGCGGTCT	ref_2011_RC	40	45	58	42	49	32	35	50	50	48
GTGGTAATGACATGGT	ref_2011_RC	52	60	83	77	47	71	67	53	63	30
TCCCTCAAGTCTAGAA	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCCAACTTAGTTAATA	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCTCTTCCACTAT	ref_3129_reverse	9	7	2	12	3	4	8	3	9	6
TTGTATCTTCGCCTTA	ref_3129_reverse	31	34	43	48	28	36	37	30	28	42
GGTTTTCGTGCGATTG	ref_3129_reverse	96	90	120	101	97	101	86	92	98	68
CGGTCAAGTATAGATT	ref_3129_reverse	55	38	68	52	42	50	43	62	37	46
GGCGGTGTAAGCGGCG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAAAATTATAATA	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGGAATACTGCGCTAC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCTTTTCTAGTCA	ref_3129_reverse	28	39	56	50	38	41	48	44	48	37
CTCGCTGGTGTCACTT	ref_3129_reverse	23	20	31	30	28	20	24	26	25	16
TCCCCATGAGTACATC	ref_3129_reverse	1	0	1	0	3	0	1	0	5	1
TTCTTTCGGTTTAACC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GCTGATGTCGGACTCC	ref_3129_reverse	18	20	33	27	14	26	16	18	16	29
GTCTTCATTCGACACT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
AATGAGGGCTGAATGC	ref_3129_reverse	18	10	16	15	15	15	15	21	16	10
ATGTGGCGATCCCGTT	ref_3129_reverse	19	11	29	20	15	14	15	20	12	19
GTATCTGCGGCTAATT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TATAGAAAGATTATCA	ref_3129_reverse	203	156	258	202	190	201	204	206	205	203
CCATTTAGGGCGTTTT	ref_3129_reverse	37	31	45	47	24	41	42	33	32	41
CTACAATGGCGTATCT	ref_3129_reverse	27	10	29	27	14	23	25	16	12	20
ACAACGTCTGCTTTGG	ref_3129_reverse	49	57	64	40	58	41	64	45	62	38
CCGCGAGCTCATCTTT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTGTTTAGGTTTT	ref_3129_reverse	27	25	36	21	22	22	28	30	18	25
TTCACATATTTTAGCT	ref_3129_reverse	6	2	6	7	3	7	11	7	9	3
GAACGAGTGAATCAGT	ref_3129_reverse	18	18	15	15	12	12	19	19	17	11
CCAGTAGGGGAGTTGT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
ATAAATCGACCCGATG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
AATATTGCCGGATAGT	ref_3129_reverse	109	70	109	92	76	91	106	93	87	74
AAGGTGGAATGGAGGG	ref_3129_reverse	24	15	25	24	9	18	13	24	15	19
TACAGCTCCGTGTAGT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTGGACCCGTCACGAT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAGAACCACGGTA	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CACATGAGCAATCTTC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTAATAAGCCTGCTTT	ref_3129_reverse	5	9	12	8	9	9	6	11	13	13
CGTTTTTACCCAGGGG	ref_3129_reverse	2	3	2	3	0	1	4	2	0	2
TACCGCATCAGGCCAC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CAAGTTCGTCACTGTG	ref_3129_reverse	35	21	53	29	37	30	28	32	26	29
GTTTGGGGTTTCGCTA	ref_3129_reverse	30	24	41	25	24	29	26	32	27	21
GTAGGTATCGAGTGCT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
AGTGAGTAGGAAGAAT	ref_3129_reverse	31	16	31	21	19	22	28	38	28	21
AACTGACTAATTTCCT	ref_3129_reverse	40	30	55	52	36	35	43	36	33	29
TTTCACAGGCTACATC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTCCCGTTATCGT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
ACCTTGCTTTTACAGC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTATTGGTCGGGTCTG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTCTCTTCCATAA	ref_3129_reverse	12	12	13	15	8	10	8	15	11	12
TTGGTTGTTACTGCCG	alt_3129_reverse	45	30	33	38	43	46	32	30	17	30
ATTAATTCGACGTCCT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGGATTAATGCGT	ref_3129_reverse	70	55	98	65	63	84	63	55	63	90
GTGATTCTTTTGAGGG	ref_3129_reverse	117	94	147	103	90	129	115	123	109	105
GGAATCACAGTGTCAG	ref_3129_reverse	27	25	28	36	23	28	22	36	25	20
CATGCTCAGGGTTTAG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
ATGTAGTATTGTTTTG	ref_3129_reverse	52	36	48	54	31	53	37	49	47	55
TACCTCCAGCAGTTTA	ref_3129_reverse	76	76	83	74	78	73	72	71	93	80
TTTTTACCCTTGCAGG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTGAATCTGATGT	ref_3129_reverse	34	23	35	23	30	25	28	23	23	24
GTACTGCACTTCATGC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTCACCCTAATTC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGGGGTCACGAC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGTTACCGTTCCGCAC	ref_3129_reverse	0	0	0	1	0	0	1	0	3	0
CTGGGGTTGTATGGCT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGTCATTGGTCCA	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCAAGTAATGGGT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTAACTTCTTACCAGA	ref_3129_reverse	0	0	3	1	0	1	2	0	0	0
TCTTAGCCCTACCCGC	ref_3129_reverse	1	1	1	1	6	3	2	0	6	1
TATTCGGGAAAGTTCG	ref_3129_reverse	0	0	0	0	1	0	1	1	2	0
CTTTATGCTGTCATGC	ref_3129_reverse	0	0	0	1	1	2	1	0	1	0
TTCGGTGAAGTGTGAG	ref_3129_reverse	22	26	24	20	30	15	23	22	20	23
TAATAATTCATGTGTG	ref_3129_reverse	73	45	69	66	58	55	58	51	59	72
GGAACAGATTCCCGGC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CACTGTAGTTTTGGTG	ref_3129_reverse	73	87	106	88	106	97	80	81	104	84
TGGTGCCGAGCAGTCG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTATATTTACGGT	ref_3129_reverse	40	42	40	54	45	41	43	53	37	38
TATCCTACGGACATTA	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTATGTACGTGCCTGT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATCTTTCTTCTA	ref_3129_reverse	10	13	20	17	16	16	8	12	5	14
CCTCGCGACAGCCGTG	ref_3129_reverse	63	50	56	64	51	67	46	82	59	58
CGTGCCTATTGCCTGT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCGTTCATCTCTG	ref_3129_reverse	39	25	37	37	32	47	39	35	31	38
AAGGCAGATGAGAAGG	ref_3129_reverse	107	91	148	114	75	100	90	75	98	101
TATTCGGTACGCCTCG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTCTTTCCGGAAT	ref_3129_reverse	5	7	13	8	8	11	7	4	10	8
TGATTACGCGGGAATT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGTGATCTACCAT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CGTATGCTTTATCCTA	ref_3129_reverse	1	0	4	2	1	2	2	3	2	1
CTAAGCCATATCGAAG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCCCACCTATGCAGCC	ref_3129_reverse	22	61	32	36	61	23	65	23	65	31
ACCTTACCTATCCCTG	ref_3129_reverse	3	1	0	0	2	0	4	4	0	0
AAGGTTTATACTTTGT	ref_3129_reverse	19	10	36	22	10	24	19	27	23	20
GGAAGTTAGTGCGAAG	ref_3129_reverse	46	40	64	57	34	47	43	41	47	46
CGTGCGTTCATCCGAA	ref_3129_reverse	15	25	31	28	27	27	31	29	35	16
CGCCTCCCTGTAGATA	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTTGAGACCGCAT	ref_3129_reverse	0	0	0	0	0	0	0	2	0	0
GCTCCCATTGGGTTAC	ref_3129_reverse	46	57	55	47	35	38	40	37	45	46
GTGAGTCGTTTTATTG	ref_3129_reverse	1	6	10	6	3	5	4	5	13	5
GTCACCAGTGTCATTA	ref_3129_reverse	91	90	119	107	86	107	86	99	100	87
ATCTTGCTGCACTCTA	ref_3129_reverse	174	173	204	187	134	153	150	167	158	144
ATCCTTTCTACAAGCA	ref_3129_reverse	0	2	0	0	0	2	1	0	2	0
CGGATCGGAAGCTTGG	ref_3129_reverse	15	15	31	16	22	26	19	31	19	16
TATATTCCGGTTGGTC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GACAAACCTTCGGCTC	ref_3129_reverse	106	81	131	98	119	98	103	106	100	85
CCTTGTATTTGATGTG	ref_3129_reverse	38	42	48	35	43	32	47	41	41	45
TTTGTTGGTTTCCACC	ref_3129_reverse	71	52	103	83	62	49	78	80	61	73
TGATAGCTCATTCTCT	ref_3129_reverse	10	2	13	8	7	8	12	8	9	13
GACAAGCCAGGCAATC	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
GATAGGGATTCGACTC	ref_3129_reverse	71	61	65	73	47	53	44	81	62	59
CGAATCCCGCACGCCC	ref_3129_reverse	28	32	34	33	22	27	25	27	16	28
TAGATGCTCTCGTGGT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCTTTTAAAGGGA	ref_3129_reverse	70	47	71	67	57	63	55	45	64	57
GTAAGGGTAAGCATTG	ref_3129_reverse	79	81	116	105	74	102	73	95	87	84
GGACGGCCTTGGGCGA	ref_3129_reverse	84	60	101	100	73	98	61	87	73	60
AGGACTACGCGGTTTT	ref_3129_reverse	13	8	5	11	9	7	10	6	5	12
TCCTTCACGCCAATCA	ref_3129_reverse	15	12	25	23	22	19	16	20	19	19
CGTGGTGCTGTTCGTG	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
ATTGAGGTTAGATATT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCGACGTTATAAGGCT	ref_3129_reverse	11	16	23	21	16	18	20	16	14	17
CGGAATTGCGCGGCAG	ref_3129_reverse	37	20	36	39	17	30	28	41	37	28
GCGGTTATCACCCTTA	ref_3129_reverse	28	19	39	41	33	40	28	21	31	35
CGTGAAATTTTTCGCT	ref_3129_reverse	28	17	19	10	13	29	16	22	23	31
CATTTGTATGTTATTC	ref_3129_reverse	40	50	60	57	55	40	32	55	51	49
CATTCCGTTTTGACAC	ref_3129_reverse	10	10	13	8	9	16	8	6	9	14
CTCGGGCGCCTTCTCT	ref_3129_reverse	0	0	0	0	0	0	0	0	0	0
TACTACGCACCTAAAA	alt_3143_fdr	27	22	37	34	24	47	20	39	25	22
GGTCTAGGTCTAAAGG	alt_3143_fdr	18	16	31	18	5	6	12	19	9	12
CATAGCTTATTTGTCT	alt_3143_fdr	9	4	6	17	3	5	5	14	5	7
TACGCGCAGGCCATGA	alt_3143_fdr	33	16	50	33	11	31	15	29	20	31
CGCGGTCAATTTACAA	alt_3143_fdr	74	54	91	100	69	88	65	90	53	66
GGCGTAGTATTCTAGT	alt_3143_fdr	32	14	38	41	35	28	21	42	27	32
AGCCCAGATCCTAGAG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
AAATTGGACTAACGTG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCCATGACACCT	alt_3143_fdr	51	61	63	61	37	50	51	53	52	52
TAAGATATCTGGCCAT	alt_3143_fdr	51	37	62	59	31	45	44	58	43	45
GCTCTTTATTGTAGCG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTTTGGTGTCCAA	alt_3143_fdr	126	66	146	109	84	110	93	103	92	83
ATTCAACACACCAGGT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTTACTTAGAGTTTAT	alt_3143_fdr	67	67	87	97	57	67	47	71	44	50
GGGTCTATTACTAGCG	alt_3143_fdr	56	18	47	41	21	40	31	30	38	34
GAATAATGGTACAACA	alt_3143_fdr	120	59	140	130	67	110	79	131	74	102
TAATCAGGTGCCTATA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGCTAAACTCTA	alt_3143_fdr	25	18	39	29	14	36	16	20	20	21
GTCTCAGTAGCCGCTA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCGTTTAACCATT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTACGTCCTCGGCTCG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CCGNTAACTTTAGCGG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTAGTCTTAGATCCAA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCCTCCATCGCAT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TACCGACGAACTTCTT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTTATATTATTCCCGG	alt_3143_fdr	23	15	40	38	10	15	15	23	18	32
CTATGGTGCGACATAT	alt_3143_fdr	74	45	89	82	24	73	48	84	50	62
ACTATGGCGAGATGGA	alt_3143_fdr	87	47	121	106	42	85	46	93	62	68
TATGTCCTTCCGAGCC	alt_3143_fdr	157	94	172	151	66	141	70	173	76	137
ATAGTGATTTTTTGAC	alt_3143_fdr	6	7	11	8	6	8	7	7	2	6
GTGCTTAGCCCGGTTG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCTGCAGCTTCAA	alt_3143_fdr	6	4	12	4	5	13	6	8	5	14
CTTCGAGGTCAAATTC	alt_3143_fdr	86	72	121	100	49	90	51	89	73	84
TTTCCATGCCTCCATG	alt_3143_fdr	46	31	67	51	38	38	31	60	34	41
TTGCCTCTTTCGAAAT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCTGTGTAAAGT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
ATCGGGGCGGCTCATG	alt_3143_fdr	16	11	20	8	6	10	7	17	12	13
TTTCCATTCGTTCTTC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGCCTGTTATGCG	alt_3143_fdr	4	2	1	9	5	6	0	4	3	1
CGTAGATTTTTTTGCG	alt_3143_fdr	55	29	60	60	21	45	33	53	35	40
CAACCTGGAGACATGG	alt_3143_fdr	60	37	73	77	38	57	37	49	45	58
ACAAAACTGTTTAGGC	alt_3143_fdr	21	13	10	19	8	14	8	26	9	12
TATTTCTCGCCCCCAA	alt_3143_fdr	58	47	69	64	35	63	38	43	33	62
ACTATTACAGCTTATC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCGTATGTCAATTATT	alt_3143_fdr	5	12	4	4	13	0	9	1	8	2
GTGTTCACGCCTGAAC	alt_3143_fdr	98	40	132	102	66	94	66	93	80	95
AGTTAGTGAATTCGGG	alt_3143_fdr	41	26	53	39	20	44	26	42	23	25
AGCCCTATCCATCTTT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GATGCATGCTGTCTCG	alt_3143_fdr	36	16	61	46	24	46	34	30	26	24
AAGGTGGTTCAACGTT	alt_3143_fdr	420	248	496	451	241	465	277	394	264	344
CATGGCTTGTGCAGCG	alt_3143_fdr	18	6	22	14	10	15	10	23	6	10
TTGCCAGTCGGGAGTC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCTTACCACCCCATTA	alt_3143_fdr	45	38	47	62	33	45	29	42	40	37
GGACTGGACATTTGCA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTCTGGTCAGTCC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CACCTATCATAGTGTC	ref_3143_fdr	122	75	126	110	92	101	86	91	93	94
ACTCTGTACTCTCTTC	alt_3143_fdr	40	20	59	52	19	42	33	52	17	35
TCTCGCACATTTATAT	alt_3143_fdr	0	1	1	0	0	0	0	0	0	0
TCATAATTATCCCTAC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTACGCACATGGTATC	alt_3143_fdr	34	30	69	62	37	52	31	48	39	47
ATTAATGTAGGTCCCA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTAGACGCTGATTTCT	alt_3143_fdr	17	10	12	26	15	14	17	19	10	9
TTATTTCATGTGAGTA	alt_3143_fdr	134	95	136	96	97	113	116	151	81	108
CACCAGTTCATTTAAG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTAAGCATTGGC	alt_3143_fdr	90	51	111	94	51	57	54	98	73	63
GCCCTTTATGTGCACG	alt_3143_fdr	282	193	371	335	180	230	187	273	200	284
TTCGGAAGGAATTCTG	alt_3143_fdr	10	11	22	15	7	16	6	13	3	7
GTCGTAGCGTTAAGCA	alt_3143_fdr	4	6	15	11	3	6	5	8	3	10
GGTGCCCATTATCCGT	alt_3143_fdr	14	12	27	28	9	12	7	15	10	13
AGATCCTTTCATGGCC	alt_3143_fdr	98	51	119	96	47	82	48	77	50	88
CTTCTGTTGCTTTTAG	alt_3143_fdr	29	21	47	41	23	26	19	37	43	36
TCTAACGGTCTCGATT	alt_3143_fdr	162	103	163	179	122	149	115	151	127	130
CCCACTTTGTCGCTCA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGCTTTAGTTGCC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTTTTCGGTAAT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CCCAAACAAGGCTTGT	alt_3143_fdr	22	11	25	11	3	8	6	17	6	15
GCGCCATCAGCTCTGT	alt_3143_fdr	167	105	218	240	97	188	108	166	102	169
GTGGACACTGTAGTAG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCATAGTTGACAATAC	alt_3143_fdr	7	7	16	12	3	15	8	13	7	10
TCACACGTCTCTTCGG	alt_3143_fdr	9	7	7	7	12	7	9	4	5	9
CCACACTTTTCAGTGA	alt_3143_fdr	105	77	114	81	54	96	46	85	64	75
TAGTAATTAAGATTGA	alt_3143_fdr	53	30	66	55	33	60	32	41	40	53
ACCCCGCTACGACTTC	alt_3143_fdr	42	10	44	29	22	27	25	34	17	36
AGTAGGGTTGCGGGGT	alt_3143_fdr	61	37	88	73	37	74	56	52	38	80
TTTTGTTATGTATCTC	alt_3143_fdr	7	4	9	5	1	5	6	6	6	7
CCTCATGCCCGTAATT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GGCATTCTCAATTTTC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TAATCAATGCCACGAG	alt_3143_fdr	22	14	24	16	8	24	11	10	15	23
TATTTCAGGTGCATTG	ref_3143_fdr	22	9	17	20	20	24	16	18	18	16
ATCTTTTGTTCTGTTC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TATCTAGGAAGGTAAC	alt_3143_fdr	75	42	109	80	53	88	42	76	61	73
GTATAAGGCTCCGATG	alt_3143_fdr	28	16	29	27	7	30	17	23	8	27
CGCCTACTAGGCGGTT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TACACGCTCTTTCTGA	alt_3143_fdr	18	12	22	31	18	22	17	18	14	18
GGTGGGAAGGTGCGAG	alt_3143_fdr	26	27	25	33	15	28	24	30	18	29
TGGGCCAAAATAGTGC	alt_3143_fdr	105	58	115	100	58	95	55	85	68	92
TGGCGGGCGTCCATAG	alt_3143_fdr	17	12	13	11	9	18	6	18	9	11
TTATAGATTTATTTCT	ref_3143_fdr	50	41	58	44	33	43	29	49	27	40
ATTTTGCGCGGCTAGG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGTTAATGCAGGC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAAGTGCTTGAAT	alt_3143_fdr	92	60	96	106	46	62	52	75	54	62
CTTAAAATTATTGCCC	alt_3143_fdr	332	175	386	353	188	295	178	326	226	305
AGTCGTTCTTCCATTT	alt_3143_fdr	114	99	183	153	71	138	70	121	67	107
GCCTAAGGGAGCTATA	alt_3143_fdr	27	13	44	34	31	35	16	19	22	20
CATATGCGGCAACGGT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGGAACGCCCGTC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCTTGCATTCGA	alt_3143_fdr	13	9	25	12	15	20	9	14	10	9
TGGGGCATACGGATTC	alt_3143_fdr	29	23	32	28	11	43	17	28	17	19
CCAGAAAATGTCAATC	alt_3143_fdr	30	17	32	22	12	22	29	27	21	24
ATATTATGGCCGTAAT	alt_3143_fdr	96	57	132	138	48	114	69	119	74	95
CCTAACGCTGGCTACC	alt_3143_fdr	159	143	214	199	165	141	140	170	157	154
GGCGCACATAAGTCCG	alt_3143_fdr	97	45	94	100	42	99	48	82	56	87
CTTGTTATGTGTCGAT	ref_3143_fdr	34	25	43	42	29	27	25	44	38	25
GCGGCCGCTAACTCGG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTATTCGCTCCCTAAT	alt_3143_fdr	196	163	212	207	214	175	210	170	244	166
TCAGTCCTGTCAAGTC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTAATCTTTTGTT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TACGATAAGCTCATGA	alt_3143_fdr	14	15	19	23	12	24	20	24	14	23
CTTTGTTAATCGACAA	alt_3143_fdr	21	18	17	31	16	22	23	26	8	22
TATGACGAGGAGGCCG	alt_3143_fdr	13	17	33	39	10	25	12	16	8	17
GCGCTAACTATGCTGT	alt_3143_fdr	13	3	24	27	14	19	14	20	9	18
GCGTCTTCCATACGTT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GGTATCGACCGTCTAC	alt_3143_fdr	53	22	37	25	18	27	25	34	38	35
TAGTCCCAGTCTAGGT	alt_3143_fdr	29	26	46	26	20	30	17	33	15	18
GCTCTGACCTACCGGC	alt_3143_fdr	229	126	277	247	122	223	134	224	158	196
CCCGGTGGCAGTCGGT	ref_3143_fdr	70	94	101	101	87	103	75	87	106	75
CTCATACTATTTTCCA	alt_3143_fdr	85	65	72	103	47	70	57	73	61	70
ATGGGGTTGAGACACT	alt_3143_fdr	38	23	44	39	19	31	23	33	20	43
TGGTTTTATACCTGGT	alt_3143_fdr	74	50	90	74	43	72	43	71	34	45
TAAGCGATTAATAACG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGAGCATGAGCGC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGCACATTTCTAT	alt_3143_fdr	560	282	738	643	214	536	281	415	275	478
ACGCATCTGTGTTTGA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAGACTCCTTCAG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
AACCCACCACGCGCAG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TAAGAGCCTCGTGCCC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCCACTCCGCGACCCT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAGCAGTGCCTCG	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCGGGATAGATGA	alt_3143_fdr	58	48	83	62	58	57	45	56	51	60
CCGTTAACTTTAGCGG	alt_3143_fdr	75	105	131	105	121	86	121	71	123	83
CGGAATGTGTCTGTTC	alt_3143_fdr	30	15	21	38	17	26	13	31	19	27
AGCGCATTCCCCGTAT	alt_3143_fdr	7	15	13	10	20	8	17	9	26	7
TACGCGGATGGATCAA	alt_3143_fdr	22	13	25	18	15	12	9	16	8	15
CAGCTTGGTAGCGCTA	alt_3143_fdr	55	55	67	64	54	44	44	57	52	48
CGTTAGACTAAAGCGC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCGATGATAGGTCGTT	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGGCTGCCCGTAC	alt_3143_fdr	219	131	237	210	142	205	155	169	156	209
TGTCAGTCCGATGTAC	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGTTGTCTAGTCA	alt_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGCTACGCTCACC	alt_4553_upstream	24	41	40	39	47	43	58	34	55	35
GCTCCCTCAGGCAAGG	alt_4553_upstream	7	15	4	7	14	10	17	5	30	3
CGAAGTACTTTTTGTA	alt_4553_upstream	21	18	19	18	20	17	30	27	18	26
CTCACCTTTGTTCTGC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
GTTATGTAGAGGTTAT	alt_4553_upstream	26	29	20	17	25	20	18	18	24	19
GTCTGCGTTTTACAGC	alt_4553_upstream	1	1	0	0	0	0	2	2	1	0
GAATTGCCGCCTCCTA	alt_4553_upstream	6	9	9	9	7	6	13	8	11	8
TTGGTGGGACGACGCT	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
CACTAGGAATTTAATT	alt_4553_upstream	11	0	13	15	12	7	10	12	8	9
CACTTCTTGCGCTATG	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TACCTGGTATACGCGC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCATCCCCATTCC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TAGCTCTTTCGACTTA	alt_4553_upstream	18	39	31	28	36	34	37	30	47	28
GCATTGCTCACCGTTG	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
AGAATTTCTGCTTTTT	alt_4553_upstream	45	35	47	25	40	34	35	34	20	30
TCCCTTGCCGTCATGT	alt_4553_upstream	13	24	30	22	27	21	20	24	36	21
TCCTATCATCCTTTGG	alt_4553_upstream	2	1	2	2	2	1	1	1	0	3
CACGTTCATGTGTCCG	alt_4553_upstream	26	33	36	20	45	15	35	26	38	18
GTTACTGCTAATTTGA	alt_4553_upstream	51	80	63	75	86	50	94	69	95	56
TTTCATCGTTAATCCA	alt_4553_upstream	42	45	53	32	47	49	47	41	44	42
CAACGATAGTACGCAC	alt_4553_upstream	9	16	9	15	16	6	18	15	21	17
TCTCTTATACGAACTC	alt_4553_upstream	26	42	36	38	38	27	43	32	34	22
TTTATGCGTAAGATGA	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
AAACACCGGGAGCGTT	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
ACCCACGAGTGCCTAA	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCCGTATGTTATT	alt_4553_upstream	5	6	5	3	3	1	8	8	10	5
GCATGTAGTTTTGCCT	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGAGCGGAGATCG	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGAAAGTAGGTCT	alt_4553_upstream	0	3	1	5	3	6	8	2	1	5
GGTACTATATTCTATA	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
GAAATAACCAAGAGGA	alt_4553_upstream	12	12	7	10	5	8	6	8	8	7
TCGGAATAGGTTACCG	alt_4553_upstream	25	26	19	21	22	25	20	19	30	16
CACACTCTCAATGAGG	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
GACAACGGCCCCATGG	alt_4553_upstream	32	18	23	14	9	21	30	21	25	31
CAGCAACCTTCCGTTT	alt_4553_upstream	2	16	6	5	5	2	20	3	4	3
CGTTGCGCTCTTGTCC	alt_4553_upstream	0	2	0	2	1	0	2	0	2	0
GCGACACCGGCTCTAA	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
GGACACATAAGATTGT	alt_4553_upstream	18	20	26	18	27	13	19	14	26	10
TCTTGACCTCCTATGT	alt_4553_upstream	139	168	141	120	190	116	190	106	205	111
TCTATAGGTTGACGGT	alt_4553_upstream	8	2	5	3	8	1	10	5	6	3
GTGAGTGGTACCCATC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
GTTTCGGAGTATCCGA	alt_4553_upstream	15	6	7	11	7	4	6	7	13	8
CTTAGCTTCACATCGA	alt_4553_upstream	39	37	28	33	23	27	27	30	31	23
AATCTAATAGATCTAA	alt_4553_upstream	17	17	20	16	25	17	19	14	15	18
GTTCTATGCAATATTA	alt_4553_upstream	14	13	8	22	15	13	21	10	22	7
GTTGAACTCCTTTGCC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCCGATATGGATG	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
AGCGATGTCATGGTGC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TAACGGTGAGCTGTAT	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
GCACCAATCGGCGTGT	alt_4553_upstream	1	8	4	7	9	7	10	3	4	4
CCTGCCTTGTACACCC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGCAGGTCCTGC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
AGTTACATCTAATAAA	alt_4553_upstream	4	5	8	6	9	5	6	9	7	5
CATATCACTGCCGAGG	alt_4553_upstream	25	36	27	36	49	39	32	33	56	23
GGCCCTCGGTAATTAC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
GTGCATATCCCGCAGT	alt_4553_upstream	9	7	4	3	3	4	7	6	18	1
TGTTGGATCCTTGATG	alt_4553_upstream	12	12	19	18	23	18	7	18	24	10
ACATACGCAGGAGTTC	alt_4553_upstream	5	11	10	8	17	6	13	10	13	4
ATGGCGAGATCTCTCG	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTGCGAATCTCAA	alt_4553_upstream	3	1	2	2	1	6	2	2	0	6
AGTCCGCCGTCGTCGA	alt_4553_upstream	8	2	6	9	7	7	11	11	6	5
CGCAAAACCTTGGTTC	alt_4553_upstream	8	14	13	15	6	9	24	12	31	13
TTCTCTGTTGTTGATT	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
AGTTACGTCTAGTGCT	alt_4553_upstream	54	53	56	47	77	39	78	56	85	57
TCCTATATATTCGGTT	alt_4553_upstream	0	5	2	4	0	1	3	5	2	1
GCATGTTGTTTTGCCT	alt_4553_upstream	172	265	238	188	203	185	243	157	288	156
CATTTCCGTATTATGG	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
CTTGCTGTCCTGTGAT	alt_4553_upstream	34	39	39	26	50	35	48	40	41	38
TAATATCACTGTTAAA	alt_4553_upstream	19	34	21	14	19	20	23	18	24	11
TATGACTAATGCCGGA	alt_4553_upstream	29	38	48	34	36	31	31	24	23	38
CACTTCGAATTGGCGT	alt_4553_upstream	18	25	24	18	24	23	28	20	28	22
GTAGTGGCTACATCTC	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAGTCCTATTGCT	alt_4553_upstream	14	25	17	20	25	29	37	10	39	18
AGGTCTAACGTTTAAT	alt_4553_upstream	139	171	143	136	178	109	166	148	176	127
TTAACGAATCACTCTA	alt_4553_upstream	0	0	0	0	0	0	0	0	0	0
ACTCGAAACTCTGGCT	alt_4553_upstream	43	56	43	46	47	39	74	35	63	19
TTTTGGTCCCACCATA	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
CCCCAGCTACGTCTTA	ref_4507_missing	4	13	8	11	25	6	12	8	27	13
ATAATGTCTATATTCT	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
ACAATTGGTTTAATCA	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
CTGAAGTCCTTTGGAC	ref_4507_missing	16	40	31	23	32	19	53	21	55	26
TGTATCTTTAAACCTG	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
GTATTTCCTTAAGTCA	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
TTTAAGTGAATGTCGG	ref_4507_missing	38	82	55	38	51	49	70	40	60	46
AAGCATGGAGACAATC	ref_4507_missing	9	10	2	2	7	4	7	6	5	5
TCGGGTCCTCGTCGCG	ref_4507_missing	32	64	43	32	52	32	45	31	44	24
CTATTCATGTGTCCAG	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
TATGGAGGTCTGTGTG	ref_4507_missing	3	9	5	3	11	6	8	2	5	2
TGTTACTTCACCAATG	ref_4507_missing	7	3	4	3	7	5	4	0	1	2
CAGTCTCTTGGACTCT	ref_4507_missing	14	29	25	11	43	19	23	15	28	14
GCATTTCTCCATTCTG	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
TATAGTTTCTTTTGAT	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
TCCGCCAGTACCATCT	ref_4507_missing	18	36	28	16	44	17	38	17	23	24
TGTTATGCTTTTGTGT	ref_4507_missing	66	83	60	46	72	52	82	37	55	34
CCTCTTGGGCTCAAGA	ref_4507_missing	27	63	32	21	52	31	51	22	45	22
ATTTAGGATATTGCCG	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTATAACGGTTT	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
TATGCGGATTTTTATA	ref_4507_missing	3	5	2	2	9	5	12	2	8	4
GTTTCGGGACAACGGT	ref_4507_missing	9	8	12	15	19	7	23	13	13	11
TATAGAATTTTCTAGG	ref_4507_missing	9	25	20	10	27	16	31	18	20	3
TATTTATACCGTCATA	ref_4507_missing	21	22	31	24	34	21	39	20	40	18
CCCAGTGTCGGAAATC	ref_4507_missing	12	17	8	6	23	12	17	11	23	8
CTTCTGCCTGCAAGCA	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
GAGCTTGAGCGCTTCC	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
TCGCATAATATTGTCA	ref_4507_missing	80	106	103	70	113	86	128	60	147	69
GGAGGTCGCGGTTATT	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
GGAGGAGATGTGCTTC	ref_4507_missing	21	43	17	17	36	16	57	16	37	27
AGTTGCATGAAGGTTC	ref_4507_missing	29	46	20	24	39	30	48	20	38	31
CTTCGCTCCGTACGTA	ref_4507_missing	8	4	4	7	7	4	11	8	4	5
GAGGCCACGCTATTTG	ref_4507_missing	44	80	58	48	76	49	89	57	95	41
GAACTGTGAGGGGCTA	ref_4507_missing	8	11	4	11	15	6	8	6	19	7
AGCACTTGGAATCTTT	ref_4507_missing	17	22	15	13	23	11	33	20	20	15
TACCTTGGACGTTGAC	ref_4507_missing	33	40	29	16	43	18	37	17	39	23
GTATCGCTCTTCGTAA	ref_4507_missing	0	0	0	0	0	0	0	0	0	0
TCAATGTCCGGGGTAC	ref_4507_missing	21	29	24	25	32	24	39	26	52	14
ATACGGCGTGAAGATA	ref_4507_missing	7	6	6	4	5	4	12	3	12	6
GGCGGATAACTTCATG	ref_4507_missing	35	52	41	38	55	36	50	40	42	41
GTTTTACTAAAGTTCT	ref_4507_missing	33	44	28	45	41	27	55	47	58	28
GGCTAGAGATATTTTA	ref_4507_missing	34	59	36	42	49	33	38	33	45	24
TTACTTCGTAAGCCTC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
ACAAGCATTGCGCAAA	ref_2406_upstream	15	22	16	17	28	11	23	18	25	25
AAAACTGGAGAGATGA	ref_2406_upstream	8	12	7	13	11	8	7	8	17	11
CACCCGTTGCTTTGGC	ref_2406_upstream	9	20	8	12	35	8	40	12	29	13
TCTTAGTGCCATCAGA	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTACGTTGATGGC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTTTGGAATTTTC	ref_2406_upstream	10	33	15	11	37	11	33	6	43	13
CCATGCGAGCATTGAT	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
GAATCGTTTCATAGGG	ref_2406_upstream	11	38	19	27	32	24	34	19	41	18
TGTTTTTAGAGGTTGA	ref_2406_upstream	1	4	1	1	5	0	2	0	2	2
CTCCGGGTTATACGCG	ref_2406_upstream	18	40	17	15	25	11	40	17	31	19
ACTACCACACGTACTT	ref_2406_upstream	10	22	16	18	36	12	20	13	28	16
ACACCCCAACCTGCGG	ref_2406_upstream	11	6	7	5	10	7	10	0	8	3
ACTTGGATATTTGGAC	ref_2406_upstream	17	25	22	15	37	9	14	6	28	14
CAAGGTACTGGTAGAG	ref_2406_upstream	33	44	42	38	65	25	54	29	60	22
CGCCCTGCTTGTACCC	ref_2406_upstream	7	9	8	12	7	9	10	5	16	7
TAGGTCCTCTACTGGC	ref_2406_upstream	21	38	25	7	30	11	37	13	29	13
TTACTTCGTAAGACTC	ref_2406_upstream	85	135	93	49	149	56	188	64	185	71
AGTGTTTTGCAGAACC	ref_2406_upstream	106	215	148	120	244	114	249	113	226	90
TTCCCGTCAGCAGTTC	ref_2406_upstream	1	2	0	3	3	1	2	1	9	1
CTTGTAGCTACTTGAG	ref_2406_upstream	10	20	23	15	19	10	24	6	22	12
CCCATGATATAACCTA	ref_2406_upstream	25	59	21	26	63	28	86	22	98	20
CTCGGTACGAATACTA	ref_2406_upstream	14	16	10	11	23	7	32	8	27	11
GTCCTCCCTTTGGACC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
GGCGCCAGCCACCAGG	ref_2406_upstream	43	54	45	42	49	45	59	29	58	33
CTCTTCGGGATATGCG	ref_2406_upstream	5	10	10	5	8	4	9	7	14	7
AGGCGGTGTTTTTTTC	ref_2406_upstream	12	26	15	12	19	10	21	9	25	9
CGTTTTGGTGCTGCCC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
TCTAAGTGCGCCGCCT	ref_2406_upstream	13	31	16	24	28	10	42	22	35	18
TAGGCTTCTAACTTCC	ref_2406_upstream	18	31	19	14	37	24	49	22	50	12
GACATCGTTCGAATAT	ref_2406_upstream	3	9	3	7	6	4	4	6	4	2
CTTTTCCTCTTAGTGC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
GCCATGCTTAGTGGCA	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTATAGTGAGTTC	ref_2406_upstream	11	21	24	10	30	7	25	14	25	14
TTACATCAGCCAGCGC	ref_2406_upstream	8	9	9	6	15	2	9	7	13	5
AAGCCGTACTGCATTT	ref_2406_upstream	28	62	42	39	68	32	53	27	73	24
AGTTCCAGTGGGGCCC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
GACTTAGCTTATATGT	ref_2406_upstream	21	34	36	23	46	25	41	17	40	18
GGAGATTGTGGGTATT	ref_2406_upstream	32	51	33	47	62	38	42	32	65	30
CCACCGCACCATTTTT	ref_2406_upstream	7	14	4	10	7	3	8	4	16	2
CGGCTGATCCGATTTC	ref_2406_upstream	16	33	26	17	32	29	17	26	30	12
TGAGATCTCTGGCGCT	ref_2406_upstream	26	40	21	19	65	33	50	23	59	27
GGTTACACTCCGTACC	ref_2406_upstream	3	77	7	5	57	4	77	1	65	6
CCCAGTGCTGCCAGTC	ref_2406_upstream	18	32	19	20	44	15	50	22	31	10
CTATGGCCCACCAAGA	ref_2406_upstream	12	15	9	7	14	10	16	2	21	7
ATCTGTTGTAGAAGCA	ref_2406_upstream	4	7	8	4	4	0	7	5	11	6
AGCTGTAAATCGACCT	ref_2406_upstream	27	68	45	29	46	27	80	33	73	48
GTGTTCTGTTCAAATC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
TACGCAAGTGTCCCGT	ref_2406_upstream	9	17	24	18	25	14	31	11	37	13
TCGCTTGCTATAGGGG	ref_2406_upstream	12	39	21	17	31	15	23	15	35	15
TTTGCCGTTACATCGA	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
AGGACAGTCACAGCTT	ref_2406_upstream	8	8	23	14	15	14	24	9	24	18
TACGGAACTGTTCTGG	ref_2406_upstream	33	64	26	30	66	30	41	28	43	25
TTCAGCATTCCCTCCT	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
ATTCAGGATCGGGCCC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGATCTGTGTGGT	ref_2406_upstream	6	22	11	2	20	7	19	2	19	7
ACGGCCCAGCCGTGCG	ref_2406_upstream	2	12	2	3	15	0	14	3	15	2
CCAGCCCCCCCCTGTC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTCTTTCTGACAG	ref_2406_upstream	11	12	11	10	20	6	11	5	21	7
TTGTAATCTCCACCTG	ref_2406_upstream	35	51	53	22	58	20	62	24	56	28
GTTTCTCGTGCGGTAT	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGGCCTTCTAACG	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTAAAGTCTGCAT	ref_2406_upstream	10	19	13	13	25	11	21	13	17	10
TAATCGTCATTTTACT	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
AAGAATTGAAGTCAAG	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
TCCTATCTCTTCATGC	ref_2406_upstream	28	41	36	30	44	31	50	27	58	35
TCCATTCATTCTGGCA	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
CCAGCCCCCCCTGTCA	ref_2406_upstream	85	136	127	74	114	92	114	91	144	80
CTTGTTATATTGACTT	ref_2406_upstream	3	13	7	8	15	14	13	4	16	4
CAATGCTTATGCGCTT	ref_2406_upstream	8	13	13	11	18	2	20	4	17	5
TTTTACGGATTTACGG	ref_2406_upstream	7	27	27	8	37	17	26	15	24	10
CCTGCGAACTGTCTTT	ref_2406_upstream	6	21	13	13	38	11	28	5	29	7
TCACTCTTCGGGTACT	ref_2406_upstream	3	5	6	8	8	9	5	3	9	5
TCGCTGCCCAGCTTCA	ref_2406_upstream	35	45	51	53	56	32	59	52	54	28
CTTCCTTCACCGCGGG	ref_2406_upstream	31	67	42	36	42	56	64	40	73	33
CACAGGTAGGGCTCAA	ref_2406_upstream	41	35	33	19	56	23	49	36	65	29
AACTACGGACAGTCTG	ref_2406_upstream	16	31	21	14	28	15	40	8	23	16
TTTTCCTTCCTTACCT	ref_2406_upstream	0	13	2	2	19	3	27	2	17	2
TCTCGCGACTTCTGCT	ref_2406_upstream	81	121	77	71	137	85	133	52	161	53
GCCGGTTACACCACCG	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCGATCCCCGGGT	ref_2406_upstream	18	48	11	4	56	6	44	8	59	4
CCTTTCGTTTGTACTC	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
AGATCACCAATTGGCT	ref_2406_upstream	27	51	29	29	52	28	54	27	52	30
GTTTACTTCTTACTCA	ref_2406_upstream	10	6	7	2	11	3	10	2	5	2
TTCATAACCAGGGTCG	ref_2406_upstream	20	47	30	27	48	26	46	24	63	18
CAGGCTTGGCGGGTCC	ref_2406_upstream	72	103	79	97	115	69	128	76	131	79
TAGTCGCCATCCAGTT	ref_2406_upstream	23	51	43	37	49	32	58	22	47	22
ACCGCCATTCCAGCCG	ref_2406_upstream	20	22	26	20	33	15	32	20	41	22
CATCTCTGGACGGTTG	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
GCAATGTTGCTAATGT	ref_2406_upstream	9	12	3	11	11	5	10	7	6	1
ACGGAGCATGTCCATC	ref_2406_upstream	1	12	10	7	14	4	8	4	9	5
CAGTCGAAAACATGTT	ref_2406_upstream	0	0	0	0	0	0	0	0	0	0
TTACTGTGTAAATAGC	ref_2406_upstream	2	3	3	0	0	0	4	1	5	0
CTGACCCTTTTTACAG	ref_2406_upstream	54	103	53	50	92	63	123	46	94	49
GCTTCCATATCTAGTT	ref_2406_upstream	14	18	19	11	11	10	13	14	11	18
GCGGGTTGCCGGTTGT	ref_2406_upstream	12	24	11	11	25	9	20	10	26	15
ACACTTACCAATTCCT	ref_2406_upstream	6	20	2	7	19	7	26	3	14	2
CTCGCGGTACTGTTCA	ref_2406_upstream	14	14	15	6	16	14	36	14	22	13
CCTTTACTGACATTAC	alt_4642_reverse	14	20	8	21	16	8	20	10	9	8
TTTGGTAATGTCTATA	alt_4642_reverse	15	24	18	25	30	16	18	9	31	21
TTATCCCCGGCATTGA	alt_4642_reverse	21	37	35	29	53	29	47	16	58	22
TGTTTTCGCATCGGGC	alt_4642_reverse	33	23	26	15	25	21	18	13	19	16
TCTAACCAGCACGTTG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCTCGCACTCGAA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTCCTGAGGGGGA	alt_4642_reverse	37	30	28	36	35	31	45	26	31	30
CCCGGTCTAGAACAGT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CACATATTTTTAGCCT	alt_4642_reverse	28	49	27	29	55	27	43	32	37	22
ACGTCATTGACTTGCA	alt_4642_reverse	34	30	34	24	37	23	40	26	36	13
ATCTTTAAGCATATAC	alt_4642_reverse	3	7	1	1	1	2	14	5	7	1
CTGGGGATTCTTCGAG	alt_4642_reverse	16	19	16	15	24	16	16	7	22	21
AAGATTAAGATCGATT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CACCACATGCTACGTG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TATGATTTTTCTTTGG	alt_4642_reverse	5	12	18	7	15	19	12	9	17	9
CTTGCTATTCCTTAAA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTGGGACTAGCAG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCAAGACACTTGT	alt_4642_reverse	7	12	13	6	11	9	11	6	10	7
GCTTTCGCTTGTATTC	alt_4642_reverse	18	31	16	13	31	17	22	15	28	12
GGAAATGTTATAGTTT	alt_4642_reverse	1	5	5	3	8	6	4	1	7	8
AATCTGCGCCTCCGTT	alt_4642_reverse	8	11	10	15	13	5	17	10	19	8
GTGTTGCCAGTAGGGA	alt_4642_reverse	51	66	74	52	71	37	84	41	98	40
TCTGAATTCACCGTTT	alt_4642_reverse	32	28	23	25	30	28	34	26	27	28
CATCGTGAGCAGGCAC	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CAAGCCTCCGTGCTCG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
AATTAGGCGGGGCCAG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TCTCAGGTTCGCTGTA	alt_4642_reverse	9	18	15	14	22	12	23	7	21	7
AATCGGTTTTTGGAAA	alt_4642_reverse	20	30	27	27	38	28	25	22	19	22
CGGTCCTAAAGGTGTG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
ATCATATTGTTTTTTT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTGTGCCCTCTGG	alt_4642_reverse	15	35	29	19	39	14	27	14	28	20
AACTACCTCCCAGTAT	alt_4642_reverse	54	87	72	42	102	42	96	57	92	37
TGTGTATCAATATGGA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CATCTGCACGATTCAG	alt_4642_reverse	11	14	3	11	6	8	10	7	12	10
CAGCATGGTTCCAATT	alt_4642_reverse	43	74	48	51	67	58	68	46	70	57
GGCGTGTTACCCCAGT	alt_4642_reverse	33	28	45	42	38	37	41	38	57	26
TCTAGGGCTCGTATTG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CTACTCAGCTACGCCC	alt_4642_reverse	27	41	37	19	55	24	51	21	38	10
TCGCGCAGGGCCATGA	alt_4642_reverse	8	11	7	11	7	7	12	8	11	4
CTTGCTTTATTAGAAA	alt_4642_reverse	6	28	21	9	18	12	23	3	31	17
ATCTGAAATCGTTTGC	alt_4642_reverse	6	7	4	7	16	1	7	5	7	4
TGTTCTGGGACTTGGC	alt_4642_reverse	35	46	30	26	56	25	53	27	65	21
CCCATCTCGTCTGTAA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TGTATTATCTATTGCA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
AGCGCAATGGTTCCGG	alt_4642_reverse	15	29	16	20	11	17	25	19	26	10
AGTCTCTCTGACCATA	alt_4642_reverse	58	62	67	51	83	54	81	46	81	53
GAACGGTGCCTACCTC	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TTACCCCATTTAAGCT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
AAGCAATGCGCATACG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTGCCGGACCGGG	alt_4642_reverse	31	36	30	29	42	23	53	30	40	27
TTATCCCGAAGGCTAC	alt_4642_reverse	9	11	3	13	8	4	10	7	9	3
AGATGGTATCGCCGTA	alt_4642_reverse	47	40	43	45	58	34	51	35	73	40
GTTTTCGATTTGTCTT	alt_4642_reverse	9	6	13	14	9	6	5	4	11	4
TAGCGCACTTACAACG	alt_4642_reverse	35	60	41	42	72	42	68	25	76	19
CTGCTTCTTTGTCCTA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GCATAGTTCATTCGTT	alt_4642_reverse	1	6	7	3	7	1	10	10	10	0
GATTGCGTGTTAATAT	alt_4642_reverse	26	40	35	37	43	35	56	35	42	25
AAATTGATTCTTAGAG	alt_4642_reverse	56	64	39	37	69	53	86	43	77	37
AAGCACTTGCTGATCA	alt_4642_reverse	26	33	34	18	33	14	20	19	37	21
ATCCCGGACAGCAATG	alt_4642_reverse	16	29	16	26	19	10	35	20	32	17
TGTGAGCTGTTTCGCG	alt_4642_reverse	12	16	16	9	20	7	22	10	10	12
CTTCGCAGGTCACATG	alt_4642_reverse	15	21	9	21	17	14	22	13	28	18
CCAAACCTGGTCACCG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CTATAAACAGTCGCAG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CATTCCTGACTCTTTC	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GACTCAAACAATAAAG	alt_4642_reverse	63	88	51	52	60	62	58	50	82	49
CCGCAACGTTTACCTG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGTTTACGCTATT	alt_4642_reverse	0	2	1	0	2	1	1	0	1	0
AGGTTGTTAAGGTGGG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTAAATCCTCCAG	alt_4642_reverse	17	24	25	24	23	11	15	12	18	16
TGCCGGAGTAATCTAC	alt_4642_reverse	18	22	22	14	26	22	23	16	27	10
TCAGTCACGGGTATTC	alt_4642_reverse	45	59	54	37	53	32	62	31	59	29
ACATCCTAAAATTGGA	alt_4642_reverse	18	21	17	11	24	16	26	9	31	10
TCTTCACTTACAATGT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TACACATAGGTACGTA	alt_4642_reverse	10	20	11	20	20	11	25	11	16	12
CTAGTTCGTTTCGCCA	alt_4642_reverse	24	47	42	25	46	23	38	33	41	36
GACAGTCGAGGAATCG	alt_4642_reverse	3	6	6	3	4	1	7	4	8	1
CAATAGGCTTGAAATC	alt_4642_reverse	53	69	44	48	60	45	57	49	68	38
CGGATTTAATGTCTGT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
AAAGCTTAGCACCTTT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTTTCAATAGCCG	alt_4642_reverse	20	18	15	27	19	14	13	13	22	16
GGATAAAACGGAGATG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TGGTATTTACGTCGGT	alt_4642_reverse	18	35	29	14	40	12	28	21	32	29
CTAGAGTCTATGGGAG	alt_4642_reverse	13	21	15	10	28	12	28	11	18	6
CCCCGCTGTGAGTGAT	alt_4642_reverse	24	40	22	19	41	21	40	12	33	15
CAGCAAGTACCGGTTT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCTGGACATGTTT	alt_4642_reverse	5	5	7	7	8	5	4	5	6	3
TTGATCGTCTTAATAT	alt_4642_reverse	17	26	24	20	32	14	33	20	37	17
CCCGAAGCACTTAAAG	alt_4642_reverse	24	25	29	10	39	12	32	14	31	9
AGCCGCAGCTACGTTA	alt_4642_reverse	10	38	27	14	33	12	34	28	41	12
GTAGGGGTTTCTGGCT	alt_4642_reverse	38	52	28	31	51	24	44	33	50	26
ATCAAATGCGCAATGC	alt_4642_reverse	26	43	39	27	40	27	45	25	50	34
CCTTGACTTTGTTTCG	alt_4642_reverse	0	5	5	2	11	2	3	3	8	0
CTCCGCTAATTGATCG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
TCAATATTGGTACAAT	alt_4642_reverse	57	68	49	55	75	49	85	49	87	40
GATTTATGACAGTTGA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTTCTCGTCTGTA	alt_4642_reverse	71	106	61	59	112	48	88	56	132	44
TCTAAATCATAAATCG	alt_4642_reverse	18	25	19	16	21	18	22	8	29	18
CTTTACGTATGGTTTT	alt_4642_reverse	24	33	28	21	34	28	37	22	26	19
AAAACCGTCAGTCTTA	alt_4642_reverse	9	11	13	3	16	10	11	5	15	10
AGAGTTCGGATTGCAC	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGCAACCAGCCC	alt_4642_reverse	33	49	45	40	36	23	41	37	40	26
CTGTGAAATGGCTGCT	alt_4642_reverse	73	62	63	58	81	71	70	60	70	60
GTTTCCAAATTTGTCA	alt_4642_reverse	37	49	45	30	67	26	47	14	56	32
AATCTCGCCTGTTCAT	alt_4642_reverse	37	28	38	24	42	28	36	37	48	43
GTATGTGAGTTTTGCA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGCGATAGCATGT	alt_4642_reverse	26	50	36	22	46	32	36	16	44	21
TTGATATACCTTATTT	alt_4642_reverse	1	6	0	2	2	3	3	1	3	1
GCCAGCATCCCAGGCT	alt_4642_reverse	20	49	22	22	50	17	35	24	39	13
CCACCACTAGCACAAA	alt_4642_reverse	27	38	33	30	51	20	42	23	33	23
GGCACTCCGGCGTTGG	alt_4642_reverse	20	58	54	42	73	39	72	52	69	42
GTCATTTAGCTTCTAT	alt_4642_reverse	7	7	8	10	6	6	12	7	11	10
TTGATTGTTTGTTGAG	alt_4642_reverse	21	25	14	5	19	14	19	12	13	13
AAACCCCCATGCAGTA	alt_4642_reverse	81	92	91	69	77	57	95	61	87	43
AGTGGAAAGGGGGTTT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTTTCCTGTATCC	alt_4642_reverse	14	17	15	17	15	24	18	16	11	9
TGTGATCAGGAATTAA	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGAACCTGCGTTA	alt_4642_reverse	12	6	12	5	17	15	9	6	16	13
GGGGTTCCCAGGGTTC	alt_4642_reverse	108	141	152	132	137	88	165	116	143	100
TCGCCGGCCGGAGTAT	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
CTGCATTCCAACTACA	alt_4642_reverse	75	108	76	57	108	55	108	67	116	65
GCACGTTCGTACGGCG	alt_4642_reverse	0	0	0	0	0	0	0	0	0	0
GGTACTGGTAGATTGG	alt_1150_fdr	9	4	9	14	4	8	2	10	2	8
GGGACGTGTTAATGTA	alt_1150_fdr	12	12	23	21	8	18	3	16	15	10
GAGGGGGGTCGCAGGC	alt_1150_fdr	67	13	61	61	27	85	34	50	11	59
AGTATGACAATCTTAT	alt_1150_fdr	86	52	118	108	39	100	57	74	48	69
ATGTGTCTAACCTGTA	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ATAACCTCTTGTTTAA	alt_1150_fdr	26	21	52	44	22	36	18	50	16	30
GCAGCCTTCGTGGTAT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGAGGTACGTGTC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCAGGTCTCGTCT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCTTTGGCACCTA	alt_1150_fdr	21	68	46	25	74	32	83	21	114	27
CATCTCTATACTTCAG	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGGGAACTGTCAA	alt_1150_fdr	159	90	198	182	93	148	86	154	79	135
TAGTCGCGCCCCGCAG	alt_1150_fdr	23	6	23	24	17	16	7	15	5	12
CATGCACGTTTGTCCC	alt_1150_fdr	7	0	6	3	2	3	1	3	2	7
TCTTCCATAGGTCTCT	alt_1150_fdr	146	61	153	134	53	127	64	143	54	125
GCGTGTCAGGCCTTGA	alt_1150_fdr	1	1	0	5	2	4	5	6	1	5
TTTTGGCAAATTCCTT	alt_1150_fdr	63	22	60	57	18	44	24	43	31	53
CCACACGGTTCCCGTG	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ATGTACTTTCTGTAGC	alt_1150_fdr	71	35	89	90	41	90	40	78	29	67
CCCCTCATGCCTCCTA	alt_1150_fdr	57	40	66	55	45	57	44	39	37	42
TCATTGTCTACTCGTT	alt_1150_fdr	16	8	13	20	9	18	4	13	4	10
GTGTCTATCGCCGGCT	alt_1150_fdr	34	10	43	40	17	41	12	35	15	20
GGTTGTCTCGACTTAC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTAGTTAAGCCCA	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CATGTGTGAGCGTAGT	alt_1150_fdr	60	32	64	56	27	51	26	53	24	52
TTTTCTTAGGTCGCCG	alt_1150_fdr	33	18	48	58	20	40	19	54	23	47
CGGGTCATCTGGGATC	alt_1150_fdr	115	52	113	94	59	90	49	81	60	109
GGCCCATTGGTCTCAA	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTCTAGAATATCC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTATGGCGACTTG	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTTTGTTCGGCAG	alt_1150_fdr	35	11	55	44	19	45	17	30	13	35
AGTACAGGCATCTTCT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACCCCGGCCCCATTCT	alt_1150_fdr	1	3	1	2	1	4	1	0	4	1
TGGCCTTTCGTCTGTC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCGCGATCTAGAA	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCCCCTTTTACAT	alt_1150_fdr	36	18	35	37	21	34	29	28	23	34
CGTGTCTTCGCAACTC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
GTATTCGTTGTTATCT	alt_1150_fdr	95	30	120	113	49	93	42	79	55	76
CTATGAACCGGTTGGG	alt_1150_fdr	85	52	77	57	46	65	57	79	50	65
AATCACGCCGGTATGT	alt_1150_fdr	23	17	29	17	16	18	10	27	21	19
GTCTGGTGGCTGTAGG	alt_1150_fdr	46	29	54	37	22	41	17	52	24	42
GAGCATTAATTCCTCT	alt_1150_fdr	178	65	246	155	64	150	69	176	70	129
CCCAGTTAGAGATGTT	alt_1150_fdr	21	7	19	22	16	25	17	14	20	11
TACACTTGGTCACCTA	alt_1150_fdr	1	12	4	4	13	4	19	1	12	4
CCTCAAATATAACCAG	alt_1150_fdr	70	33	80	52	38	60	44	60	40	60
TGCCCATTGCTTGTAC	alt_1150_fdr	176	76	203	177	76	149	79	145	95	140
AAAAGAGCCCTTGGGG	alt_1150_fdr	69	27	92	73	27	55	31	82	38	63
TCTGAGCTATAGTTAG	alt_1150_fdr	72	35	92	77	38	71	29	73	41	63
CGCCGGCGTCCAGGCG	alt_1150_fdr	224	97	248	183	91	194	103	200	96	198
TTGTAATTAAGCACAC	alt_1150_fdr	51	27	77	63	31	54	27	71	38	46
TCCAGCGATGACTCTC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGCTATAATGGCT	alt_1150_fdr	42	12	39	48	13	32	16	48	15	36
GACATCTGATCATTTG	alt_1150_fdr	8	6	19	13	4	6	10	7	4	3
TATTATGTCGACTGTC	alt_1150_fdr	30	17	18	19	30	9	34	24	25	16
CTCCATTTGATATGGT	alt_1150_fdr	3	7	7	3	2	3	0	4	2	9
AGCCCTACTTAGCCGC	alt_1150_fdr	50	27	56	48	19	47	25	46	27	46
TTTTTTCACCCAATCT	alt_1150_fdr	117	49	129	98	39	111	46	106	36	80
TGAAGTGTGTCATTCG	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
AGATAGTAGTTACGCT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TATAAAGGAGCTAGAC	alt_1150_fdr	231	124	304	238	127	267	124	266	148	200
CAGAACACGGGGTGAT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGCTGGACTTGCG	alt_1150_fdr	36	12	57	33	14	34	19	30	18	43
TCTAGGTTATGCGGAC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGCGTAGGATCT	alt_1150_fdr	52	31	45	48	28	44	25	50	21	48
GGGTACTTTCGTGGAG	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CTACCTCTGCCTGACT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TAGATTACTATGAACA	alt_1150_fdr	21	10	28	19	8	23	17	12	12	17
TCGGGGTGATACTTAC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTGGGTATTAAGT	alt_1150_fdr	165	58	178	169	82	149	83	137	58	131
GTGGGGGGTCTAGGTC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCTTACTGTAGAT	alt_1150_fdr	69	26	41	57	34	56	27	46	25	47
ACTCCCAGTGTAACGT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTGCGGCTTTCGC	alt_1150_fdr	139	52	134	111	61	106	77	116	58	99
TGTAATATTTCCCACT	alt_1150_fdr	83	34	101	81	36	75	46	84	38	56
CTTTTTGCAATGTTGA	alt_1150_fdr	63	28	70	73	41	72	35	61	33	55
TTCTGGGCTTACTCTG	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGATTACCTCATG	alt_1150_fdr	173	99	175	145	103	178	85	153	79	127
ATCATTCTCTGGAGGC	alt_1150_fdr	43	30	79	45	24	59	16	62	33	59
CCAGATGCCATAACGT	alt_1150_fdr	19	7	30	19	13	18	10	19	8	19
TTGTTGTTCTCCAGTA	alt_1150_fdr	79	29	65	64	26	65	43	61	45	65
AAGCCTGTGATAAGGA	alt_1150_fdr	60	28	82	58	26	52	29	63	39	52
TTAATGCATACTATCG	alt_1150_fdr	72	37	64	50	34	67	25	56	35	58
GGCGATGAGCCCTAAC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGGGCCCAACCTT	alt_1150_fdr	266	77	287	233	66	244	122	225	100	222
CATTAGGAGGGGTCCT	alt_1150_fdr	42	24	47	32	13	34	14	23	12	38
GACCGTTGCTTCGTCG	alt_1150_fdr	30	13	38	27	13	40	17	37	18	44
ATTCTTAGACCACACA	alt_1150_fdr	86	32	84	76	37	78	37	66	31	66
CTCAACAAAGGATGGT	alt_1150_fdr	100	46	147	126	52	126	41	126	44	110
GAGAACTAACGCGCCG	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCTGCTAAGTTCG	alt_1150_fdr	101	35	137	116	40	109	48	99	45	91
CCTGCTCCTTATATTA	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGCAGCCGGTTTG	alt_1150_fdr	66	45	86	52	36	50	51	73	38	52
GCGTAAGACACATTCT	alt_1150_fdr	107	53	126	118	49	96	46	88	44	95
GGCAAGTTCGATTTCC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCACCTCCGTGTA	alt_1150_fdr	128	68	166	150	83	145	77	143	74	155
CCCCCCGGCCGCTGCC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
GTCATGCGCAAAACGT	alt_1150_fdr	68	30	100	72	28	81	42	63	37	73
GGTACATGGAATACGC	alt_1150_fdr	396	155	484	404	201	395	169	406	197	437
TTTTCATTCTGTGCGT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGACACTTACGGT	alt_1150_fdr	77	23	82	56	25	61	31	40	31	61
ATGATCATTCAGAGTC	alt_1150_fdr	20	6	27	17	2	9	7	9	7	12
CATTAAATTGATTACT	alt_1150_fdr	7	2	15	8	2	16	6	13	2	12
TCACCACTTTCCACAT	alt_1150_fdr	88	37	73	69	37	61	42	80	38	78
TGGCCTGGGAATAGTA	alt_1150_fdr	39	18	40	41	7	34	20	38	15	30
TCACTCATCGGAAATC	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACAACAACTCGTTTTG	alt_1150_fdr	18	16	22	27	13	23	18	20	18	27
GGAGGTTCAGTAAACT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
ACTCCTCGATTTAAGT	alt_1150_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTATTGGAAGCCA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CCTGTATTACCCTGGA	ref_6105_new	16	39	24	18	31	10	45	14	43	11
TCCTTTTGTCTCCGAG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GCAAGTCAAACACCTG	ref_6105_new	18	49	21	10	66	18	51	16	53	12
GAGCGCTTCCTTAAAC	ref_6105_new	23	66	25	21	57	22	48	21	59	18
TGCCCGGAGCTCTAAA	ref_6105_new	13	26	9	13	30	8	33	9	33	6
TGTGACTAAGTGCCAT	ref_6105_new	39	129	48	43	118	32	142	39	93	28
TGTCATAGCCAGCCTT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GACAATTTTGACAAAG	ref_6105_new	29	51	37	21	71	28	69	29	97	27
TCCGATCATCCATTTA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GGACTCCAGTGGTTTG	ref_6105_new	53	143	57	45	129	60	163	53	163	47
CTCCACCAGTTTCTGT	ref_6105_new	4	13	2	2	12	4	8	4	17	1
CGCCGACGTTATATTG	ref_6105_new	13	34	11	12	52	15	45	14	36	14
GCACGAGGTTATTGTA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GTTCTTGTATATACAT	ref_6105_new	8	20	19	4	25	7	17	8	30	17
GACGTACAGTCTCTAC	ref_6105_new	12	14	11	6	18	9	13	13	8	7
ACTTTGTCATATGGGT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CAGATTATGTCGCTCG	ref_6105_new	8	9	8	18	19	11	27	8	19	10
TGCCGCTGATGGGGCA	ref_6105_new	10	29	10	9	29	10	15	11	29	7
AATGCACAATTGCGCG	ref_6105_new	4	10	1	0	7	0	4	1	4	1
CAAACAAAGAACTTCC	ref_6105_new	27	55	38	37	47	24	54	21	49	28
GACGACTACCCCGAGC	ref_6105_new	1	2	0	1	9	2	1	1	8	0
GACGATGCCGGCGCGA	ref_6105_new	3	6	3	6	8	2	4	8	5	4
CTGAAATATTATCGTA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
ATGCTCTTTGCAGAAT	ref_6105_new	0	1	0	1	0	3	0	0	3	2
CGGAAGTCGTACACTG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CTTACTTTTTCTTGCC	ref_6105_new	19	56	40	24	54	19	66	25	52	13
TGCCTGCCGTCTCCCA	ref_6105_new	3	2	0	1	1	0	2	0	1	1
CGGCGCACGGCTGACT	ref_6105_new	37	78	37	38	88	48	73	45	79	47
GTCCCAGGCGGCCACG	ref_6105_new	5	3	3	2	7	2	1	1	8	0
CCCTACTAATCTTGCT	ref_6105_new	0	2	0	1	8	4	6	1	2	0
GGTATAATACTCATGA	ref_6105_new	41	102	52	42	104	33	93	46	106	46
TTAGGGAATTAAGCAT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GCTCGAGGTGCCTAAG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
AATTCTTTCGGGCGCT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GCAATGGTCTGAATAA	ref_6105_new	9	29	7	6	28	10	26	11	24	4
ACTCTTAGGACGTATC	ref_6105_new	0	0	0	0	0	0	0	0	0	0
TGATTAGATGTCAATT	ref_6105_new	2	4	1	3	7	0	2	2	7	5
TCCGGCTCCTAGTTAT	ref_6105_new	1	0	0	5	3	0	4	1	5	1
GGAAATGAGATGATAT	ref_6105_new	10	26	12	13	33	8	32	7	22	11
CGGCCTTCACTCACAA	ref_6105_new	23	51	24	14	47	17	62	21	63	29
GACGGAATAACTTGAT	ref_6105_new	12	18	8	2	16	12	18	8	25	6
CCCTTACATGGCTGAA	ref_6105_new	12	35	8	12	40	4	44	6	49	8
AAGACTACAGACCCTA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CTTTGGTATACCTAGA	ref_6105_new	23	45	23	20	47	15	59	10	34	12
GCTTTGGCCTATCTAG	ref_6105_new	0	1	2	1	2	0	0	0	1	0
GTTTCGCATGGTGCAT	ref_6105_new	9	11	8	8	16	6	21	6	14	8
CTTTGTGTCTTGTACT	ref_6105_new	12	60	21	18	49	13	57	12	33	17
ATACTGGTACTCCAAA	ref_6105_new	17	56	22	12	42	12	51	10	56	17
AATATGTTCCGCGGTC	ref_6105_new	19	38	24	24	48	26	52	16	37	24
ACACGCTCATCTAGAA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GCATCAAGGTCCTGGG	ref_6105_new	1	6	3	0	4	5	6	1	4	0
CTCATCGTTTGGCTCC	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CACAGCAGGACAATGC	ref_6105_new	24	54	26	24	58	28	45	16	42	12
TCAATTAGGTCTATGG	ref_6105_new	16	38	20	15	41	12	38	22	45	18
TAATCCGGCCGTAATT	ref_6105_new	30	72	34	16	69	16	54	20	59	25
GAGACTGATCAGGGGC	ref_6105_new	2	2	1	2	1	1	4	0	2	2
AATTGGAAGTTACTTC	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GTCTGCATACCCCAGC	ref_6105_new	16	60	10	12	63	12	68	12	63	13
TCTACTCGGCGTAAAC	ref_6105_new	18	37	21	4	25	11	27	11	26	11
ATCCTGTCCCATCATG	ref_6105_new	87	181	99	88	208	72	171	69	194	69
TCAATATTCTTAGGAT	ref_6105_new	26	44	24	14	39	15	40	14	42	15
GGTCGCCTGCGGAGCC	ref_6105_new	7	59	15	11	51	8	46	17	50	10
TGGAGTGCGTTGTGTC	ref_6105_new	30	60	39	23	38	15	65	23	59	22
GGGGCCATGGACTATG	ref_6105_new	13	33	18	14	35	21	25	11	38	13
ATTCCTTATCCGCACC	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CGATCTAAGGTAACAG	ref_6105_new	7	14	2	11	18	4	21	6	17	2
CTATCCAGTTGTGATG	ref_6105_new	34	101	47	34	108	50	127	31	96	23
GCTCATCGGGTGTATG	ref_6105_new	2	2	1	7	9	2	10	1	5	2
TGTTCTCATAGGATAG	ref_6105_new	21	44	21	21	27	25	49	17	53	14
TGTGGCCATCCGTTTC	ref_6105_new	3	5	1	0	1	4	3	0	3	0
ACGGTCCGTGTTCTCT	ref_6105_new	4	10	4	2	10	8	18	6	8	0
CGACAGTTCGCTGTGG	ref_6105_new	6	21	15	7	32	15	21	11	25	11
GCATGTTTACGTTCGG	ref_6105_new	42	92	64	46	112	49	94	53	119	43
TTCTCCGTATGGTGTG	ref_6105_new	12	53	25	21	75	18	59	18	62	14
GGTAGGATCAGCGTTT	ref_6105_new	4	21	6	10	22	8	12	17	22	9
GTGGCATGATTTGTCT	ref_6105_new	12	30	10	13	31	12	35	13	21	11
GCACAGGCTCGCACGC	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CGCACGTTTGCCAAAG	ref_6105_new	41	86	34	32	79	30	80	29	73	27
GGGTCGACCTTTACAT	ref_6105_new	8	17	18	2	29	9	30	8	24	5
CTACATTGCGTGGCAA	ref_6105_new	6	2	5	4	5	2	7	1	12	1
TTCCCACCATGATGGC	ref_6105_new	13	31	17	17	21	14	35	19	32	8
CTAATGTCAGTGTTTT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
TAGTGTGTTTGTAGTG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CGCAGGAACTGAATGG	ref_6105_new	18	49	34	34	48	14	59	24	51	20
TAAATATTAAGGACAG	ref_6105_new	3	8	12	4	10	2	6	7	11	4
GCCTGGAGGGAAGTAC	ref_6105_new	10	21	1	2	26	6	18	11	15	10
GGTGCTGGAATACGAC	ref_6105_new	3	17	10	8	21	2	13	6	12	5
CAATCCCCCGTGTCGA	ref_6105_new	5	10	4	6	8	1	9	3	16	10
TCGTAATTGTCTCCCC	ref_6105_new	4	13	10	3	14	9	14	3	5	1
GGCGTTAGCCCCTTGA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
ATCCGCCGGTCGGGAA	ref_6105_new	6	11	2	5	7	4	9	2	10	3
CATCGCGTCAAACACT	ref_6105_new	11	21	16	18	23	7	22	16	28	8
AGACGATAGAAATCAA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
ATTTTTAAAATTATGG	ref_6105_new	33	85	44	34	66	42	66	37	78	27
ATCAGAGATCTTATAA	ref_6105_new	0	11	1	3	4	2	18	1	6	0
GCACTCGCCAGGATGC	ref_6105_new	24	58	11	16	77	15	63	25	70	21
AGCATGTAAAGGACTC	ref_6105_new	10	19	14	2	14	10	25	11	13	7
TACATATTCTTTCTGA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
AATTATGACTTTTTAT	ref_6105_new	38	60	46	40	69	26	71	31	58	28
AGTCTGATCCTCAACA	ref_6105_new	10	17	11	11	24	7	36	20	25	13
AGGTGGCTTGGGCTTT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CACCACTATTAAACAG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GAAGCCCGGAGTTCTG	ref_6105_new	37	57	27	16	91	33	71	31	74	19
CTTGTAGTTCGAAGTC	ref_6105_new	16	25	12	14	15	8	21	10	25	6
TCTAATGTGTCTTGGA	ref_6105_new	89	207	112	83	225	81	301	76	246	79
AGATACGTTGCGTCGA	ref_6105_new	26	49	28	27	55	21	54	26	58	26
ACCCAGAGCCGTGAAT	ref_6105_new	66	225	95	81	258	77	242	90	262	81
TAATCGTCTCCAGGGT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CGGTTAATTATTGTCG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
TGTAACGATCTATTGC	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CTGCGATCCAAGGAAA	ref_6105_new	16	22	15	11	20	8	16	9	34	10
GCTTCTAGGGATTTGT	ref_6105_new	26	63	37	31	64	23	64	26	68	18
TAAGTTCATGTCTCCG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
AACTCAATACGAAGGA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GTGATCCGCTGCAAAA	ref_6105_new	8	6	5	9	11	8	7	3	13	4
TGGGTTGAGAATCTAG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CTATGTCTCTCAGCAG	ref_6105_new	8	10	3	12	19	5	17	5	15	13
GTATCGCAAGCTTACA	ref_6105_new	37	70	25	30	84	35	86	36	84	25
TAAGCCTCCCTCCGGG	ref_6105_new	23	45	17	19	52	19	60	21	64	14
ATCTATGCTAGTTCCA	ref_6105_new	23	71	24	19	43	11	50	5	41	13
ACCTGCGACGCCTGTT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GACAGGGCGACACTAC	ref_6105_new	16	20	9	15	26	17	34	12	31	11
AAGTCGTTTATCAACC	ref_6105_new	1	2	3	2	6	1	8	5	4	2
ATTCAGACCTGCATGA	ref_6105_new	7	15	7	10	20	3	15	5	22	2
GTCACCGTCACATGGT	ref_6105_new	18	33	15	14	37	9	28	18	46	20
GTGTGCGTTGGCGTGG	ref_6105_new	1	7	6	3	11	4	15	3	19	4
GTCTTTCTACTCCGTA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CGGCGCGGTATATCGA	ref_6105_new	14	19	13	16	20	10	17	11	17	9
ATCTTTCGTTGTCTGA	ref_6105_new	3	4	6	3	1	2	6	0	6	1
AGCACCTGTATGCGGG	ref_6105_new	11	15	8	9	21	15	27	7	17	8
CGCTGCCGGTAGAGTG	ref_6105_new	2	18	2	6	12	8	15	1	6	1
TGGGTCCAGCTATAGA	ref_6105_new	16	25	21	16	23	13	33	15	43	14
GATTCAGAATCTAATA	ref_6105_new	33	39	25	24	32	14	61	14	40	21
CCCTTGGACTGAGCGT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CTCGTGATTAGAGACA	ref_6105_new	16	43	25	16	44	25	33	11	31	11
CATACTCCGCAGGACG	ref_6105_new	18	64	19	27	47	24	74	34	69	21
CTTTTCGCACGCAAAT	ref_6105_new	12	30	14	4	24	13	30	9	26	6
TTGTCTCCATGATATC	ref_6105_new	0	0	0	0	0	0	0	0	0	0
ACAATCCTTGTGGGTA	ref_6105_new	13	29	9	10	32	11	27	13	19	8
TATCCCTGAAGCCTCA	ref_6105_new	17	36	25	14	36	14	34	13	30	11
TTTACCGTCTCATCCT	ref_6105_new	4	8	6	4	16	6	10	7	22	4
TGTGGAAACATTGTGT	ref_6105_new	4	20	14	5	18	4	23	5	16	5
GCAATCCGCTTAAAGA	ref_6105_new	1	14	8	6	7	7	18	8	19	4
TTTAGTATGTGTTTAA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CTATTGTATTTTAATG	ref_6105_new	10	29	16	4	33	13	38	8	27	14
TACCCTCCTTTTTCCG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GGGTTTACCTACTACG	ref_6105_new	2	8	6	6	19	3	14	2	5	4
ATATGAGGACTGTCCT	ref_6105_new	34	99	34	25	63	29	81	34	89	30
TGTCCGGATCGAGGGT	ref_6105_new	5	12	3	6	15	5	17	6	11	5
CTCTAGTATAGGGTTG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CCTCTTTACCGTGCAT	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CGTATGCACGCCCGAA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
TCTTTCTACTAGGTTG	ref_6105_new	19	65	30	18	54	18	46	13	56	15
GTTGCGAGCCTCCATT	ref_6105_new	30	40	40	24	60	22	58	14	60	23
CAGACTCAAAGTCTAT	ref_6105_new	3	16	5	1	23	5	17	3	13	2
TTACGACGAATGGCGG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
TCAAAGGACACCTGTT	ref_6105_new	0	3	0	0	0	0	2	1	1	0
CAGTCACTCTCGTTCG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GTCATGATGTTTATCA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CAGGTGACTTACGACG	ref_6105_new	16	62	45	29	64	32	71	15	78	20
TATACAATTTTTAATT	ref_6105_new	33	73	35	22	67	24	82	20	86	39
ACGAACCCGATCGTTT	ref_6105_new	28	54	18	18	47	29	66	13	58	12
CGATCGTATGTTTTCA	ref_6105_new	11	46	15	28	42	13	39	18	55	8
ATACACAGACTTAAAA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
TTGCGGTTGCGACTTA	ref_6105_new	13	29	13	19	39	20	29	18	41	15
TGCCACTGCGCGAGCT	ref_6105_new	27	31	16	7	43	9	36	9	46	9
CAGTTTGGATCTGATG	ref_6105_new	7	17	5	6	14	4	18	8	9	6
GGTGAGTTATATGTAA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
TCTTCTCAAGACAGTG	ref_6105_new	8	14	14	6	18	6	18	5	10	1
GATTTTACGATATTTT	ref_6105_new	16	34	26	12	24	20	55	15	40	17
AACTATCCGTACGAAC	ref_6105_new	17	49	25	29	47	18	62	17	49	21
CGTTTCTTTGTTCCAT	ref_6105_new	12	18	17	8	28	11	32	11	28	14
AGGCGGATCTATAACT	ref_6105_new	10	26	17	13	25	21	32	8	49	10
TACTTCGCTAGCTCCC	ref_6105_new	9	41	19	20	35	14	26	15	38	9
GTGTATTTAGTTTAGG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
CAGCACTTGCACCGCA	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GCAAGTTTTGTGATAG	ref_6105_new	0	0	0	0	0	0	0	0	0	0
GTGTTGCTCAATGCAA	ref_6105_new	5	19	5	12	16	11	21	8	24	12
ATTTGTAGTTCATAAT	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
CTGTTTATTGTACCAC	alt_3640_RC	12	29	21	7	25	8	30	11	26	14
AGTGCAGCCTAGTCTT	alt_3640_RC	8	60	23	15	43	18	50	23	61	13
TTTCTGGCCATTCACA	alt_3640_RC	31	72	27	32	127	27	72	25	79	30
GCCCCATCCCGAGGTT	alt_3640_RC	8	16	13	6	12	5	12	5	8	4
ACGGGCGAATGCCACA	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
GTCGCCACCAATCAAC	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
ATCCTGGTGGACTGAC	alt_3640_RC	11	28	18	9	40	12	17	12	24	12
AGTGATCTCCCAAGCC	alt_3640_RC	34	54	40	30	44	28	53	22	47	32
TGTTATCACCCGTTCG	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
CATCTTGCTTGGCCTT	alt_3640_RC	8	16	6	14	17	5	15	9	10	5
GGGTGCCTTAGTAGGA	alt_3640_RC	3	13	2	5	4	3	8	3	5	4
AGGTCAGTGGATGAAG	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
CCGCCTAGTCGTTTAC	alt_3640_RC	0	4	2	3	5	2	10	0	4	2
CTTCCGCATTTAAGTG	alt_3640_RC	4	17	14	7	23	6	10	3	22	12
TATCAAGCGACTGTCC	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
ACAATACTCCCATTCG	alt_3640_RC	130	289	149	93	319	95	332	120	340	122
AGCTGTTTTGGCACGC	alt_3640_RC	3	1	2	0	4	1	1	2	2	0
TCTTTGGTACTAACAT	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
CATCCTTCAGTAGACG	alt_3640_RC	6	7	3	5	9	2	9	1	19	2
GACTTCCACAATTCGT	alt_3640_RC	24	54	39	33	57	26	92	42	65	29
CGTCCTATCTTGAGCT	alt_3640_RC	15	58	26	24	68	27	67	23	76	20
AGCGTTCGCTATCACA	alt_3640_RC	99	177	114	92	192	75	217	88	181	86
AACCTAGATCTCCGGT	alt_3640_RC	6	22	9	8	19	8	30	8	34	5
TATGGCTCCTCACGTC	alt_3640_RC	15	28	16	8	32	12	22	11	27	8
TTCCATTCGGACCACT	alt_3640_RC	36	75	43	44	85	43	66	43	104	28
GTTGTTCCTCAGTCTA	alt_3640_RC	16	51	17	14	40	10	51	18	41	14
TATGATGAGAGTTAGT	alt_3640_RC	43	113	41	46	94	48	93	48	105	48
AGGGTGGGTGCACGAG	alt_3640_RC	19	36	18	11	42	21	58	19	40	18
GGGGCTGTGATCCGGT	alt_3640_RC	2	0	0	3	1	2	3	2	6	1
AGCACTCCGATTTAGG	alt_3640_RC	0	0	0	0	0	0	0	0	0	0
GTAGCTATAATTTTGG	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
CTCACGAGCTTGGAGG	alt_4879_missing	16	30	25	30	28	15	35	18	30	9
AGGTGACAACATCTGT	ref_4879_missing	14	24	18	15	27	18	27	12	34	10
CTAAGGGCCTTAAACA	ref_4879_missing	3	18	13	3	13	7	15	8	11	10
GTCTCAATCCAAGCAC	ref_4879_missing	14	20	8	4	13	10	17	4	27	7
AGTATGGTCTCTAAAA	ref_4879_missing	2	15	7	4	11	5	12	10	6	7
CTTAATTGTTGTGTAT	ref_4879_missing	0	3	2	3	2	3	2	3	6	6
CCCTTAGTACTCAGCG	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
TCTACTTTAAAGCGTC	ref_4879_missing	22	44	24	17	43	19	49	16	51	24
CGTTAGTCTTTGCTTA	ref_4879_missing	1	26	3	1	24	5	37	1	57	6
TTTGTAGGCACAATTC	ref_4879_missing	5	18	18	6	11	10	16	4	19	4
TTGCTCTGAGTCGACA	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
TCATGATTTGACCGGG	ref_4879_missing	27	50	43	25	53	31	45	20	78	29
CAGTGTGGCCATTCTG	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
AATTGTCTAATAGTAT	ref_4879_missing	3	3	3	5	6	2	6	1	1	4
TCGCTTGTTGTAGGGT	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
TTCCTATGCTGTAGTC	alt_4879_missing	15	32	9	17	31	11	32	17	34	17
ATATTACATTCAGTCC	ref_4879_missing	1	1	0	0	0	1	2	0	1	0
AATCGCTTTGGTTATC	ref_4879_missing	4	8	5	7	9	3	13	9	18	1
GAGAGCGGCTGATTAG	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
AGATGCGCTTTCCTCA	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
GTTGGCCCATAGATCA	ref_4879_missing	4	13	10	15	26	16	21	7	23	10
CTCAAGCAGCAAGGCG	ref_4879_missing	0	1	1	0	0	2	0	0	1	0
CCTTCATGTGAGACGG	ref_4879_missing	4	1	5	2	9	10	6	6	6	4
TTTCCCTCGCTTGCAG	ref_4879_missing	9	24	12	12	28	14	27	8	25	7
CCGCTGCACATTTAAA	ref_4879_missing	13	37	12	8	34	21	44	13	40	9
TCTGCCCTGTGCGACA	ref_4879_missing	3	7	4	9	10	6	17	6	18	3
CATGAAGAGTCAGGCT	ref_4879_missing	55	132	71	68	111	74	145	69	127	50
TATCTCGAATTCGTAT	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
ACACCTCCGTCCGTCG	ref_4879_missing	1	6	1	0	4	2	8	0	11	0
TTGTGTTGCCTTCTGC	ref_4879_missing	0	3	1	2	0	0	1	0	1	0
GGCTTACACTATTGCC	ref_4879_missing	6	7	4	5	7	8	17	8	18	1
TGGGACTTCCTCTCAT	ref_4879_missing	25	30	28	33	49	23	54	20	39	25
CACGCCACATGTCGGC	ref_4879_missing	22	29	14	4	22	18	37	14	35	15
AGTGGAGAAGGGACTC	ref_4879_missing	10	27	16	11	35	15	35	13	33	12
TCTGCTGGTTGCTGAT	ref_4879_missing	7	21	14	5	19	7	20	14	22	6
CGTCTTTTGAATGCGG	ref_4879_missing	25	30	18	19	34	22	38	18	32	23
TAGACGGCTATCCTCC	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
TTGGACTGTCATTTGA	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
CAGAGTTACGTAAGCG	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCGAGCGCCCCG	ref_4879_missing	1	21	11	3	15	6	11	9	14	7
TCTCAGGTAAAAATTT	ref_4879_missing	1	9	2	0	3	5	9	4	5	2
GTAGCAGGTCCCAGTT	ref_4879_missing	3	9	6	7	13	5	8	4	6	4
GAGCGCACACCGTATG	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
TTCGAATGGGTCGGAG	ref_4879_missing	25	31	30	32	33	19	46	16	62	21
CACCATGACGTCTATT	ref_4879_missing	1	8	3	4	14	7	9	6	7	4
CCCACGCGGATCTCAG	ref_4879_missing	0	0	0	0	0	0	0	0	0	0
ATATGGGGCCTCTCGT	ref_4879_missing	8	13	7	1	23	9	16	9	20	5
CTTCGCCTTTCTGCTT	ref_4879_missing	9	35	12	12	26	13	16	7	32	6
GTCCATTTCCCGGAGC	alt_1834_reverse	2	5	7	4	9	7	7	5	9	2
TGTATGTCGTGAGAGG	alt_1834_reverse	90	89	106	98	85	88	110	91	106	87
TTGGTTTATTCCCGTC	alt_1834_reverse	11	12	12	21	8	17	17	7	9	13
TGATATGTTACTGAAT	alt_1834_reverse	2	3	6	3	3	2	0	5	3	2
GCGCGTTTAGGACTCC	alt_1834_reverse	107	65	128	74	70	99	86	113	85	106
CGCTGTTTTCGTATCA	alt_1834_reverse	10	17	17	11	27	8	20	8	23	12
CGTTTAGCTTAACGTT	alt_1834_reverse	74	87	89	68	78	77	71	85	49	60
CTTTCTTTATCTTCCG	alt_1834_reverse	588	379	713	593	492	576	455	540	460	493
GGCCGGATCACGCATG	alt_1834_reverse	529	467	695	579	468	554	489	538	493	553
GGAAATCGATATGGAC	alt_1834_reverse	94	74	123	93	72	98	91	107	82	74
GCTTCTTCGTGGTTTC	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTGCGCGTGATTG	alt_1834_reverse	68	62	81	74	72	72	76	77	82	67
ATTGTAGTCTACTCCT	alt_1834_reverse	45	46	45	28	34	36	28	50	37	45
AATAAACGGGAGAGGG	alt_1834_reverse	34	33	43	36	39	39	36	40	43	24
CGCGCAGAACATCCTA	alt_1834_reverse	67	62	69	66	54	59	54	67	50	57
ATTATGACTTGTGGGC	alt_1834_reverse	20	17	26	17	19	30	22	33	25	29
TTTTCGACTCTGTAGT	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
CGCAATAATCTTTTGT	alt_1834_reverse	63	24	65	61	38	56	35	52	55	52
CACTTTTAGCCACTCG	alt_1834_reverse	15	25	21	18	19	20	27	13	26	20
GAGGTCTGCTCCAGAC	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCTATTGCTGGGG	alt_1834_reverse	19	6	21	12	14	18	12	18	14	12
TCGGGCCGTGGCAGTT	alt_1834_reverse	48	49	63	55	43	72	50	58	45	57
CTCGTAACTCTAGTGC	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGGCAACGAATCA	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCTTTTCTGACGG	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
TCTTTGCTGGCTTATG	alt_1834_reverse	46	49	79	67	44	78	71	62	63	75
CGGGTCTTGGCAATAG	alt_1834_reverse	98	98	94	87	91	88	88	89	104	73
CTACTTAGGTAGTGAG	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
TGTCGGCTTCACAAGT	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
AACTGGTGTTTCTTGA	alt_1834_reverse	11	15	7	8	10	10	15	11	21	13
GGCTGTCTGCACGTAC	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGTCACTTGTTTT	alt_1834_reverse	7	11	17	9	7	9	9	7	13	4
CTAAGAAGCCGTCCAA	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTTTCGCCTATAG	alt_1834_reverse	19	14	11	10	25	12	15	20	17	18
TTTCGACTTGGCGGTG	alt_1834_reverse	15	18	16	22	17	12	19	19	12	23
TACTTTAGCTCGCCGG	alt_1834_reverse	51	40	65	49	45	53	49	42	59	51
AGTTCAATTGCGGTAG	alt_1834_reverse	26	28	31	27	18	14	28	18	25	23
GAACACCGAAGTTATG	alt_1834_reverse	9	13	14	10	15	6	17	9	17	12
AGGCTGGGGCTCTTTC	alt_1834_reverse	18	19	14	17	10	24	22	12	24	14
TTTAGCGGTATAATCG	alt_1834_reverse	310	258	384	288	284	299	316	306	303	296
GATACACGCATGTCAC	alt_1834_reverse	13	12	24	21	19	4	14	15	18	12
TCCCTCGCTGCGAGTT	alt_1834_reverse	45	44	52	54	40	45	38	41	53	36
GGGCAGTATTCTACCG	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
AGGTTAACACACTTCG	alt_1834_reverse	14	6	18	5	20	9	14	5	9	6
AGCTAGCTAGTTTCTG	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
TATATAGCGTGTATCC	alt_1834_reverse	17	20	34	24	19	31	15	29	22	29
GGCCGGATCACGCGTG	alt_1834_reverse	1	0	0	0	0	1	0	0	0	0
TCTGTCTCATCTGGCA	alt_1834_reverse	29	24	42	33	22	38	29	33	36	28
GAGCACGAGTGTAGCC	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
CCATTTATAGAGCAGC	alt_1834_reverse	8	7	10	5	3	6	2	3	4	2
ATCGCAATTTTTGCGT	alt_1834_reverse	353	319	464	359	338	340	299	354	331	327
TGGCTTAGGTTGACAT	alt_1834_reverse	31	26	43	32	37	24	32	26	34	32
TCGTAAGGGGATTTAG	alt_1834_reverse	22	17	11	13	8	16	10	19	7	10
TTAATACGTAAGTACT	alt_1834_reverse	33	30	42	49	32	40	29	18	26	33
GCACTCTCCCGTTATA	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGGTTCTAGTCCC	alt_1834_reverse	36	37	39	47	38	28	48	15	35	29
GTTTCGTAATGATTAT	alt_1834_reverse	30	27	32	43	18	30	17	24	25	23
TTTCGCTTACAGGGAC	alt_1834_reverse	30	15	21	21	23	40	25	19	26	16
CCCGATTTAGCGGATC	alt_1834_reverse	20	8	14	10	12	14	8	11	15	14
GCTTGGCTGTCGGAGC	alt_1834_reverse	14	20	11	26	31	13	25	15	31	12
CGGCGGGGGATTGGAC	alt_1834_reverse	49	44	72	46	60	42	42	31	42	42
TGCAGTTTTTCCTAGA	alt_1834_reverse	5	1	7	3	5	1	1	6	3	2
CGTTAGAAAGTGTTGG	alt_1834_reverse	20	19	29	19	26	16	8	21	20	11
CGGTTCGCAATTGTCG	alt_1834_reverse	23	32	39	30	33	22	31	32	42	41
TCCGCGTAGTGATCCA	alt_1834_reverse	35	26	35	23	29	36	23	29	35	27
GTAGATCCGCGCCCTG	alt_1834_reverse	3	2	5	2	3	2	6	5	1	6
GCCATGCACCTGTGCT	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
CTTCAACATCGTATTG	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
ATATTCTAATAGCTAG	alt_1834_reverse	35	24	31	28	18	18	19	22	22	24
TTCTACCGTGATGCGC	alt_1834_reverse	26	35	27	32	30	30	31	26	25	20
ACATTAGTGAGTCTCA	alt_1834_reverse	14	5	4	4	6	8	7	9	6	10
GTCAGCTCGAGGATCA	alt_1834_reverse	2	4	8	6	5	9	6	11	3	7
ATGATTCTCCTAGGTA	alt_1834_reverse	40	38	40	45	36	44	29	38	45	34
ATGCATGTACGAATTG	alt_1834_reverse	104	93	129	109	110	114	102	118	103	116
TATGGGCGCACTACGG	alt_1834_reverse	14	19	29	19	6	20	21	8	5	7
TTTAAATCTCCGACTC	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTGTTCTAGTTAA	alt_1834_reverse	15	25	22	18	12	16	20	22	15	14
GATACGATCGACCGAT	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
ATTACTTGCTTTTGTT	alt_1834_reverse	34	25	39	42	20	34	23	29	30	49
AACGCTAAAGATCCAG	alt_1834_reverse	0	1	4	5	6	4	4	4	2	0
GTATTAATGGAACATC	alt_1834_reverse	17	18	29	16	17	13	22	14	16	12
GACCTTTTTATTTGAC	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTAGGATAAGGCT	alt_1834_reverse	33	25	29	27	29	35	32	32	29	25
CCGATCCGTTTATTGA	alt_1834_reverse	13	17	23	18	6	23	14	16	15	23
AGCTTAGAGGTTATGT	alt_1834_reverse	5	10	12	14	5	14	16	12	11	6
GCGCCTTGACGGCCGA	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGGGCGGATATCA	alt_1834_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCGGTGTCCTGGT	ref_5827_new	2	4	7	5	3	3	4	5	5	2
CTTGTGCCGTAACCAA	ref_5827_new	134	166	195	167	180	141	165	132	175	125
TGGTACTTGATACGCC	ref_5827_new	14	15	17	8	17	17	21	11	18	16
TGCTTATCTGGTACAC	ref_5827_new	29	51	27	22	48	32	62	18	54	30
TGCTACCCTAGTCATG	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GTTAGCTTTATCGCGT	ref_5827_new	33	48	43	30	39	32	54	31	45	34
TGAATAGGTTACAACC	ref_5827_new	7	3	4	10	10	4	6	8	5	3
GTTAACCGCATGGTCG	ref_5827_new	46	28	53	41	48	48	39	37	59	46
ACCGTACCCACCACCG	ref_5827_new	11	22	16	9	26	4	9	9	17	10
GCATTCTCTCGTCTGT	ref_5827_new	40	71	54	60	51	51	66	43	58	40
TCGCTTATCAGCCCGC	ref_5827_new	65	61	84	61	58	52	78	55	67	64
CTCTAGGCCTGCTGAG	ref_5827_new	21	17	28	19	18	10	16	17	25	20
GTGAGCTAATCGCCCC	ref_5827_new	0	0	0	0	0	0	0	0	0	0
CGAGATATTATCACAT	ref_5827_new	1	2	3	0	0	0	8	1	0	0
ATAAGGTGGTGGTCTA	ref_5827_new	2	3	9	5	9	13	3	6	8	10
GCCCTATTACAACGTT	ref_5827_new	8	10	13	10	24	12	16	13	23	10
AGAAAAGGGATTGACC	ref_5827_new	15	18	25	22	23	20	17	25	21	19
TAATATCCAGTATCAG	ref_5827_new	18	16	16	16	19	14	18	9	31	20
GGCACTGTTAATGGCT	ref_5827_new	103	100	121	113	113	93	115	91	96	85
TGCTCAGGATTTGACT	ref_5827_new	1	5	2	2	3	1	6	2	1	4
AGTCACGGTAAACGGG	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GCCCGGGTATTGGTTT	ref_5827_new	19	20	16	11	19	12	14	10	18	7
TACCGGCCTCGCCCTT	ref_5827_new	0	0	0	0	0	0	0	0	0	0
AGCGGGGTCGGGCACG	ref_5827_new	79	65	75	80	76	64	72	57	66	67
TGATGGGCACTAAAAC	ref_5827_new	12	25	14	22	20	21	23	16	32	14
CTACTAGCCCTCACTT	ref_5827_new	19	30	20	27	26	24	27	21	32	19
GGCTGCCGTTCGGCGC	ref_5827_new	41	26	52	42	40	29	41	28	44	37
AATCCAGTCCAGAATT	ref_5827_new	20	34	22	26	28	16	17	11	33	26
CTGCATGGGTCGAAAG	ref_5827_new	18	21	27	22	12	10	8	25	21	6
AAAAGAGAGTGTCATC	ref_5827_new	48	47	57	55	56	49	67	55	78	54
GAACTGCTTTACATGC	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GGCCGGCGGATCAGCG	ref_5827_new	133	119	157	120	131	131	125	113	114	87
TCCGACAACTTAGTGG	ref_5827_new	22	35	29	26	34	24	22	20	31	26
GAGTATTGTTCAATAA	ref_5827_new	36	37	37	40	31	44	34	27	42	23
TGATTTCCGAATTGAC	ref_5827_new	72	70	74	69	82	55	89	66	64	55
TTTTCTACCCGTCCCA	ref_5827_new	18	22	17	19	26	3	25	7	28	9
CGTGACTTTGAAGGTG	ref_5827_new	26	31	25	26	44	21	38	33	35	21
TGGCTATTCATTCCGC	ref_5827_new	26	23	30	37	35	37	36	27	35	36
TTGACCCATTTTACAA	ref_5827_new	19	32	26	28	30	20	37	28	33	26
GACTCGCTCATTATGT	ref_5827_new	11	7	12	12	10	9	11	9	17	11
TCTCATATGCCGAATA	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GCTATTTTCTGAAGAT	ref_5827_new	0	0	0	0	0	0	0	0	0	0
CAAACTTGCTGAGTAC	ref_5827_new	21	18	17	12	19	18	20	19	8	12
GCTGCAAGATGGAGTT	ref_5827_new	111	90	148	112	103	115	107	99	119	114
GGCCTTAGAGGTACCG	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GTTTTTGGGCCTTGGG	ref_5827_new	31	29	27	30	32	27	42	22	33	25
GTCTTTAAAGTTACCG	ref_5827_new	59	71	71	57	56	50	59	49	71	65
ATAGCGGGCAACATAT	ref_5827_new	0	0	0	0	0	0	0	0	0	0
CTAGAATCTAGTGTTG	ref_5827_new	4	5	5	6	3	5	4	3	7	2
CCATTTCAGCTGTTTT	ref_5827_new	10	66	20	16	71	13	62	22	68	17
GTCCACCGTGTGTCCA	ref_5827_new	18	21	15	13	20	13	23	8	18	15
ATGGGTGTATTTTGAT	ref_5827_new	68	81	103	86	74	67	77	64	73	49
CTCTGTCATACCGGGT	ref_5827_new	38	58	49	40	54	54	53	36	41	52
TGACTTTGTGTTACGC	ref_5827_new	6	12	22	11	18	17	15	8	13	11
AGGGTCTTACAAATGC	ref_5827_new	0	0	1	0	4	0	2	0	3	3
TCAAGACCGTTGTCAC	ref_5827_new	63	67	63	45	56	43	76	50	85	36
TATCTGGTTACGCCCG	ref_5827_new	0	0	0	0	0	0	0	0	0	0
CTCGCTGAAGTGGGTT	ref_5827_new	0	0	0	0	0	0	0	0	0	0
ATAAACAGCCCTTCGG	ref_5827_new	21	42	41	28	44	36	34	32	39	24
TTGTGGTACAAAGAGT	ref_5827_new	39	40	36	40	23	27	39	20	43	38
TTTCCCGCGTTCTGCC	ref_5827_new	32	21	24	21	32	25	34	20	31	17
CGTGCTTCCCTTAAAA	ref_5827_new	0	3	2	3	0	4	3	2	2	2
TGATTTCTACAAACTG	ref_5827_new	7	14	21	10	23	9	11	10	12	9
ATTCGTTGGGAGCCGT	ref_5827_new	0	0	0	0	0	0	0	0	0	0
TAGTTCGCATGTTTAA	ref_5827_new	15	19	20	15	15	13	20	11	16	18
CACTTTAGCTATGCGA	ref_5827_new	37	30	26	24	26	28	29	26	50	23
GTAATCTAACCTGTCA	ref_5827_new	17	15	15	17	23	14	17	17	22	11
TGCAATTACTTTCCTC	ref_5827_new	79	102	100	87	91	69	116	94	108	72
CGCCTCGTAGTTCTGC	ref_5827_new	44	74	51	52	75	40	62	42	70	45
TCGATAAACTTTGGCC	ref_5827_new	13	11	22	15	18	13	17	7	10	12
ACGCCTGAGCATGGCA	ref_5827_new	6	2	2	3	0	2	3	3	6	5
CCCGATGCTTCGCCAA	ref_5827_new	11	10	13	13	16	10	18	9	26	9
CTCTGGAGGAAAATTT	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GTTGCTCATGCTATGT	ref_5827_new	5	7	6	5	2	6	7	5	7	6
TTACGATCTCCTCTTC	ref_5827_new	23	11	31	14	17	23	28	22	18	19
ATGGTCTGCGGTCGAG	ref_5827_new	101	88	135	104	110	118	119	89	106	89
GACTGACCTAACCGGC	ref_5827_new	28	36	17	35	38	25	35	24	45	21
GGCCATGTCTTGCCTC	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GGTATGTCACGATTCG	ref_5827_new	52	79	73	43	78	59	60	50	71	48
CTATAGTGCAATGCCT	ref_5827_new	15	27	44	30	16	23	29	28	25	22
GTGCGCCACGTTGATA	ref_5827_new	32	53	31	29	45	28	42	29	38	31
TTCACTCTGTGTAACA	ref_5827_new	11	18	20	17	26	14	15	11	20	14
CTTTTACCTTACGATT	ref_5827_new	47	80	82	71	78	53	62	54	78	41
CAGAGCGTGTGCACTC	ref_5827_new	10	13	8	16	11	10	22	4	20	8
GTTAGTTCAGTTGGGC	ref_5827_new	0	0	0	0	0	0	0	0	0	0
GCATGTGCGTGGACGG	ref_5827_new	48	45	56	48	48	50	42	40	49	36
CAATTATTCTACTAAG	ref_5827_new	83	86	86	65	114	81	100	92	82	78
ATTCATTTTTTCTCCG	ref_5827_new	3	4	5	2	8	2	9	1	2	0
ATTTCGCTTGCGGCTG	ref_5827_new	4	8	7	8	7	8	5	14	4	6
AAGCCTGTCAGAGCAG	ref_5827_new	4	5	2	9	7	0	7	3	10	2
TTGTTTTGTTTGTCTT	ref_5827_new	62	76	96	59	50	84	66	97	71	64
GAATTCCGTGATGCTC	ref_5827_new	12	16	16	15	15	9	18	15	12	11
ACACAAAAGAGGTGTA	ref_5827_new	15	14	18	21	27	16	23	6	23	12
GCACACCCATTGGGAG	ref_5827_new	33	32	38	34	51	16	44	28	45	33
CATGCTCCTGATGGCC	ref_5827_new	45	32	48	51	47	36	46	33	51	42
CTCGGCGGCATTTGTC	ref_5827_new	14	11	17	14	22	12	16	13	17	14
TCTGGGACATTGCGGA	ref_5827_new	6	17	16	14	19	9	21	9	9	19
ATAACGAGATTGACGA	ref_5827_new	15	15	32	25	22	12	13	15	20	13
TTGTTCATACCCAACG	ref_5827_new	0	0	0	0	0	0	0	0	0	0
CAGCTCTCTCCCCATC	ref_5827_new	4	7	2	4	8	5	12	1	16	2
GGTCTTATATGACCCA	ref_5827_new	51	44	39	36	51	46	57	43	53	37
CATAGAATTACTACCG	ref_5827_new	29	42	22	27	31	27	32	26	35	26
AGCCTTAATCCGTGAA	ref_5827_new	5	7	3	4	7	1	4	3	2	0
ACCAAACAGCGTACCC	ref_5827_new	16	29	24	32	32	23	39	16	32	18
ATGGTCTATTACTCGG	ref_5827_new	15	9	15	12	19	11	24	15	14	11
TTACTCGGTACCAGTC	ref_5827_new	0	0	0	0	0	0	0	0	0	0
TCATACCGTCATCGAA	alt_5859_new	46	55	50	49	80	39	73	54	84	48
CCCGCACATCTGGATT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CCTTGACCTTCGGCAT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CCCTGCAGCTGAGTCG	alt_5859_new	16	61	35	36	52	15	52	16	58	9
TGATCTTAAGGAGGAT	alt_5859_new	4	9	5	7	12	7	6	5	14	6
AGTTGCCAGTCACTAA	alt_5859_new	9	8	6	4	9	5	7	6	5	8
CTGGCTAAGGACCTGT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CGCGTACGAGTACGGT	alt_5859_new	0	5	4	6	7	5	9	11	7	2
TTTTCCATTAACCTAG	alt_5859_new	37	41	46	29	56	37	43	27	32	28
TCGTACTTCGCAGGGA	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CACATCTGTCATCTAC	alt_5859_new	0	1	0	0	0	0	0	0	1	2
TGGGAGCCCTGTAATA	alt_5859_new	35	42	35	41	31	26	44	25	35	35
ATGTGAGGACCGCAGT	alt_5859_new	77	161	106	87	129	80	172	86	158	68
AGATAACTCGAAATGC	alt_5859_new	3	7	5	15	10	3	9	9	5	6
TCTGCCTCGCATCAGG	alt_5859_new	36	75	47	63	65	37	63	47	62	43
CATATTACTTTCTGAG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TACGTGCGCTTTGTCT	alt_5859_new	7	9	3	3	4	1	4	6	7	7
GGAACCTGGCCGGCTA	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TCTGAAGAGGTACGGT	alt_5859_new	1	8	1	3	2	4	2	3	5	4
GCTTGAGAGTTCTACT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
ATCGTTTCGGGTAATA	alt_5859_new	6	5	4	6	5	4	5	0	9	1
ACTCTAAGAAAAACGG	alt_5859_new	17	28	34	17	38	21	38	24	49	23
TCGTGCTTGAAGAATT	alt_5859_new	21	26	21	26	33	35	37	14	22	26
ATCTGTCCCGTTGACA	alt_5859_new	146	238	184	161	247	139	251	134	261	126
GACGAAGTACGGGTCG	alt_5859_new	43	57	58	38	65	32	78	37	80	40
CTACGTTTGATCAGAT	alt_5859_new	31	57	54	42	58	36	61	39	74	35
GTTAGAGCATTGATTA	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TCTTCTTATGCAGACG	alt_5859_new	9	18	13	9	26	7	21	11	15	10
AAGCTTCAATCGGTGC	alt_5859_new	13	36	22	17	27	19	32	20	27	9
CGGATTGTAGCCCGTT	alt_5859_new	55	68	74	77	97	54	74	50	93	38
GTTAGGACCCACTCAT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TGTCCCCATAACCCTG	alt_5859_new	24	27	28	10	37	30	48	14	39	9
GTAGTTTGAAACGCGC	alt_5859_new	15	25	22	17	16	15	18	12	32	16
CTCGTGCCAAGTGTGT	alt_5859_new	12	13	25	5	32	12	25	12	16	7
CTCTGGGACGAGAATG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CTTCTCACCACTCCGG	alt_5859_new	36	56	43	33	71	41	75	47	69	26
CGTGTATAGATGATAC	alt_5859_new	60	72	63	59	80	42	73	48	68	36
GTGTGACGATGCCCTT	alt_5859_new	23	40	36	32	22	17	29	18	37	20
TGTTGTAAATAAGAGT	alt_5859_new	119	203	135	133	212	121	214	119	212	116
CGGCTTTTAGACAGCG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TCGTATGCAAGCATGC	alt_5859_new	5	19	13	7	21	6	20	8	12	1
ATTCTCCGCATCATAG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
AGTTGTAAATAAGAGT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TTCTGCGTGTGATATG	alt_5859_new	53	108	93	55	111	71	133	61	133	54
GTGTGGTGAGGTTAAG	alt_5859_new	13	37	32	23	25	18	32	18	30	23
AATTTCGCTTTAATAT	alt_5859_new	56	99	65	73	103	48	94	51	91	56
CGGGCCCCGCATTCAA	alt_5859_new	25	26	38	23	37	25	49	20	33	18
TAGTACCGATTCTATA	alt_5859_new	0	1	1	0	0	0	1	1	1	0
AACGCCGTGCTTAGGA	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CTTGTCTTTCACTTGG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CGAAGGACACCACTAA	alt_5859_new	2	1	3	1	5	1	3	0	4	3
GCCAGTCGTTCCATGG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
GACGTGTCGGACGCGA	alt_5859_new	43	44	59	37	63	26	47	47	58	35
CTGCTACCGTGTCTTG	alt_5859_new	7	63	20	20	71	13	66	13	63	13
TTGTCATATCAGCCCG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
ATTTGGGATCGTTGAT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TGAATATAGTCCCTGC	alt_5859_new	6	20	5	9	11	10	16	12	9	7
CATATGCCACTCAGAT	alt_5859_new	39	60	42	37	69	29	73	35	59	25
TTTACTATAGCGTGTG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CCTAGCCCCCTAGAAC	alt_5859_new	0	0	0	0	0	0	0	0	0	0
GTCCCTTCAATTTCCG	alt_5859_new	31	44	34	42	43	26	57	35	50	21
AGTGAGGGGTTGATTA	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TCGTTCAAGTTTCTGT	alt_5859_new	20	14	19	16	17	9	26	8	21	16
CGCGCGCGAGTGTCTT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
ATTCTTTCAGACATCA	alt_5859_new	2	14	13	3	9	5	17	10	10	4
CATTGGCCTTATTCAT	alt_5859_new	9	13	10	19	16	4	16	17	15	12
TAGCGTTTCACCGACG	alt_5859_new	29	41	32	38	35	23	31	34	49	24
TGTGTAAAAGATTTGT	alt_5859_new	50	51	54	54	93	33	71	30	66	39
ACGTAAAGTCATTTTG	alt_5859_new	32	27	14	21	51	14	42	28	52	21
CACCGCGTCTATATCA	alt_5859_new	24	52	24	22	61	17	48	19	46	28
ACAACAATTACAGACC	alt_5859_new	1	2	2	3	3	2	6	4	10	5
TTCGCAGAGAGGCCTT	alt_5859_new	72	92	88	63	108	69	94	67	82	70
TAATACGGGGTCTTGT	alt_5859_new	26	38	31	27	42	25	30	19	38	23
ACACGGTCGGCTTATA	alt_5859_new	2	33	7	12	50	11	45	6	42	6
TGTGTATCAGGAGGAA	alt_5859_new	9	24	10	5	11	7	11	14	13	10
AGCTAGCTGACAACTT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
ATATCGCTACTGGGGG	alt_5859_new	105	153	137	133	184	129	160	75	194	88
GCTCTCTCGGTGGCTC	alt_5859_new	9	11	10	8	8	6	10	7	10	7
GTCAAAGCTGTTCACA	alt_5859_new	27	43	37	26	64	36	49	28	43	22
CATCTTGTATCCGCGT	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TTACTCCGTATCCCAT	alt_5859_new	3	4	2	1	1	1	5	1	6	1
TGACGCATTGTTGTGA	alt_5859_new	133	161	109	121	167	112	182	119	196	113
ATTGTCCAATCTCGTC	alt_5859_new	11	6	7	3	10	11	12	7	10	2
AATCAAGTTATAGCTT	alt_5859_new	14	19	10	15	26	14	22	8	18	16
CATGAATCTACGGGAT	alt_5859_new	34	60	57	38	57	30	61	35	67	25
AGTGGCATTACGCTCA	alt_5859_new	6	7	5	6	8	4	11	9	16	8
GATGAAGCGTGCCGGC	alt_5859_new	4	10	9	10	10	12	11	8	15	10
TAAGCGGGACTTCCTT	alt_5859_new	13	10	13	14	15	5	10	11	11	4
CTGTATCACAAATTTC	alt_5859_new	4	0	1	2	3	0	3	1	4	2
TTGTTAGCTCGTTTAT	alt_5859_new	16	24	9	17	22	12	35	14	32	13
TCATCATGTACAGTGG	alt_5859_new	10	29	14	16	25	11	18	19	17	10
CAATGTCCAGAGGTAG	alt_5859_new	0	0	0	0	0	0	0	0	0	0
TTTAAGACTTGTTTCA	alt_5859_new	24	47	30	25	50	31	40	35	55	24
GTCCATTCGTCACTAC	alt_5859_new	21	45	39	28	46	25	50	29	50	25
ATGGCTTATAGGGATC	alt_5859_new	32	71	46	46	68	44	82	37	63	55
CACCCCTGGGCTGAAT	alt_5859_new	47	67	59	38	81	46	72	43	89	33
ATATCAGAGCACTCCT	alt_5859_new	27	33	18	22	14	9	23	7	35	7
GCTTTACAAACGACTG	alt_5859_new	65	116	74	67	109	60	109	60	98	59
TTCTTCTGCCTTCCGC	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CACCACGTGTTCTCGT	alt_5859_new	3	7	4	3	7	6	7	1	8	8
GTGTCGACTGCGATCG	alt_5859_new	46	65	58	60	72	66	69	45	81	36
GGGTGATTCTTGTCTC	alt_5859_new	0	0	0	0	0	0	0	0	0	0
CCATGTCTAGGTAGGA	alt_5859_new	41	43	46	45	63	40	58	33	65	26
GGATACATTGACCCAG	alt_5923_new	28	62	52	39	36	40	52	34	55	28
TACCCCAACCGCGGCC	alt_5923_new	29	47	48	37	48	27	59	31	62	32
CTTTGCGCAAGTATTA	alt_5923_new	31	64	45	29	68	39	53	30	55	30
TCCGCTACCTTGGTGA	alt_5923_new	74	251	104	83	208	83	241	84	256	72
GCATGGTGTACAATGG	alt_5923_new	41	70	40	42	65	37	61	34	66	40
CTCGTATCGGTGGTCT	alt_5923_new	0	0	0	0	0	0	0	0	0	0
CAAGGCGTGTAGTCAT	alt_5923_new	3	8	6	3	7	7	7	6	10	5
CTGCCGCGGGCCGCGT	alt_5923_new	0	0	0	0	0	0	0	0	0	0
TTCATATTTCGCGTTC	alt_5923_new	0	0	0	0	0	0	0	0	0	0
TCAAGTCTCTGTTACG	alt_5923_new	31	61	29	32	65	29	47	30	49	29
TGTGTCAATCTCCGGT	alt_5923_new	14	54	12	20	49	26	39	23	43	24
TTGCGTGTACTGCATT	alt_5923_new	6	12	8	7	9	4	5	5	12	2
ACCTACTGTAGTCGCC	alt_5923_new	11	16	10	19	12	9	29	11	28	13
CTTTCTACTATGGCCA	alt_5923_new	0	0	0	0	0	0	0	0	0	0
ATACCGGCGTAGAGGT	alt_5923_new	19	28	16	17	26	18	27	13	24	20
TACTCAGTGTGGGTCT	alt_5923_new	6	25	11	8	14	15	11	9	7	9
CCTGCATTGGGCCCCA	alt_5923_new	33	41	29	26	55	33	50	24	56	25
CTATAATGTCCCGTCC	alt_5923_new	94	152	98	96	147	90	176	69	147	75
TGCGCACGTTGGTACC	alt_5923_new	0	0	0	0	0	0	0	0	0	0
AGGGTAGGAGTTTTAG	alt_5923_new	9	19	18	4	18	14	28	12	25	14
AAGGTCTTCTCGCTCA	alt_5923_new	0	0	0	0	0	0	0	0	0	0
ATTCCTAGAGTGTAGT	alt_5923_new	11	9	7	12	11	7	5	3	13	7
CATCACGAGATGGAGT	alt_5923_new	0	0	0	0	0	0	0	0	0	0
TGCCATTTAATTTATA	alt_5923_new	5	17	11	8	12	7	18	4	15	7
CTTGAACCGTCTGAAT	alt_5923_new	8	21	13	7	17	8	11	10	15	7
TGTATGGTAAGTCATG	alt_5923_new	15	57	25	16	38	17	37	25	41	24
GATGGCCTTTGTTCCT	alt_5923_new	175	200	201	157	212	140	189	144	219	143
TGTCCGGGTGTGCTCG	alt_5923_new	23	19	17	20	35	29	26	24	29	18
TAGTTGTTGTTCGTGT	alt_5923_new	6	12	2	5	7	4	5	3	11	2
TTCAGTCTATCCGAAC	alt_5923_new	14	33	15	23	23	14	17	23	29	20
TGTGCTCCCCACCTGT	alt_5923_new	0	0	0	0	0	0	0	0	0	0
CCTCTCTTAACAGCTA	alt_5923_new	50	95	75	59	122	68	107	59	137	58
CTACTTTCTGGTTCAG	alt_5923_new	37	75	63	41	82	55	86	47	88	55
TACCGACAATGGTAGT	alt_5923_new	20	42	20	26	43	19	37	20	49	20
CAAGTACTGTCCGTCT	alt_5923_new	45	120	55	47	123	46	104	52	96	45
AATGTTCGTTTTGAGC	alt_5923_new	0	0	0	0	0	0	0	0	0	0
GGTCTAGCCGCTGTCC	alt_5923_new	4	14	10	2	16	6	12	3	18	4
AGTAGAGGTGATCCTC	alt_5923_new	12	29	15	9	23	15	31	13	24	14
TTTCTGTCATTCCTTT	alt_5923_new	0	0	0	0	0	0	0	0	0	0
GTACTCCTACGTCTTT	alt_5923_new	5	5	4	2	6	2	11	1	4	2
GTACTCAGGGTCTTCT	alt_5923_new	4	5	3	2	6	5	3	8	3	2
CTGATAGCGTCGCTTA	alt_5923_new	54	97	81	63	95	55	98	45	82	54
AGGATGATACAGTCCT	alt_5923_new	12	8	10	5	12	6	11	8	11	5
CCCGTGTGTTCTAGAT	alt_5923_new	0	0	0	0	0	0	0	0	0	0
TTATGCTGTTTACATC	alt_5923_new	44	81	62	48	77	53	69	41	64	39
AATATCGTATGGGAAC	alt_5923_new	8	14	8	6	14	9	13	7	24	3
ACAAGATAACTGTCCC	alt_5923_new	3	16	15	8	11	4	9	5	14	7
AAGTTGTACTATAGAT	alt_5923_new	43	68	52	37	63	41	83	51	76	31
ATCGGCCTTTGGAAGA	alt_5923_new	15	26	19	20	14	18	23	22	26	9
CATCTTATTTCTTTTC	alt_5923_new	13	14	16	15	22	11	20	11	17	9
CTTGAAATCAGAGTTA	alt_5923_new	8	27	12	14	26	15	28	14	25	12
CTCCTTTACTGGCCGA	alt_5923_new	65	352	81	79	344	60	387	79	327	78
TCGGGTTTCATTCGGA	alt_5923_new	25	34	29	28	30	21	33	15	25	22
CGCAATGTCTCTTTCG	alt_5923_new	0	0	0	0	0	0	0	0	0	0
GCCGTCTGGTTGATTG	alt_5923_new	0	0	0	0	0	0	0	0	0	0
ATTTGCGTGACCCAAC	alt_5923_new	9	6	9	5	6	7	8	8	14	1
GTTCAGTATCAGACTT	alt_5923_new	17	25	26	20	42	19	33	23	42	19
GGCGTTGGCGAAATAC	alt_5923_new	13	14	24	9	19	9	21	10	22	12
CCCCAGGCTACACCGG	alt_5923_new	23	50	30	39	40	25	58	37	45	29
TCCTTTGGGCGTACGT	alt_5923_new	26	44	29	30	53	23	51	26	61	23
TCCGGTCCGATCCCGA	alt_5923_new	0	0	0	0	0	0	0	0	0	0
GGACACCTTGGTAGCT	alt_5923_new	51	108	52	68	104	52	83	41	100	55
TCGACCTCTTAAAGTA	alt_5923_new	0	0	0	0	0	0	0	1	2	0
TCCTCCCATGTAGTAA	alt_5923_new	2	11	3	6	24	5	13	4	15	1
TGTGCTTCGCTGAATT	alt_5923_new	17	32	13	11	32	17	22	15	34	17
TCATTCCTGTGTGCAC	alt_5923_new	7	3	2	8	9	5	14	4	7	3
TATTTTGTCTTTAGTA	alt_5923_new	3	31	19	21	22	5	28	6	25	17
CCATGCTATTCTTTTC	alt_5923_new	48	65	44	30	57	25	73	28	70	25
AGAACTTAGGCGTGTC	alt_5923_new	1	11	6	5	8	6	10	6	12	6
CAATGATGGTCGAAGG	alt_5923_new	0	0	0	0	0	0	0	0	0	0
CTTGCTGGGACGGCCA	alt_5923_new	9	15	21	19	16	16	17	10	27	16
TATCGTGGGCACTATA	alt_5923_new	14	23	10	21	24	6	18	5	31	12
GTTTAAGAAAAACCTA	alt_5923_new	32	46	37	27	54	34	68	22	70	32
TACGAGGAGCCCTAGG	alt_5923_new	3	3	1	4	2	4	3	2	1	3
AATGAGCTTACTGAGT	alt_5923_new	13	24	20	16	29	14	33	12	38	7
TATCGCAGGGAGGCGA	alt_5923_new	11	17	27	15	14	16	19	19	13	16
GAGCGGGTGCTTATAC	alt_5923_new	3	6	4	4	11	1	11	2	11	3
GTTGGGTCTGTACGCC	alt_5923_new	20	33	20	18	36	23	29	12	43	21
CGCTCGCGATAGATAT	alt_5923_new	4	15	6	4	17	3	15	4	20	1
TTGACTTTTAGGTTTT	alt_5923_new	28	57	34	27	37	26	41	19	41	16
TCTCAATCTCTACCGT	alt_5923_new	0	0	0	0	0	0	0	0	0	0
TGCACCTACGGTCAGC	alt_5923_new	27	56	43	20	43	37	65	24	60	33
TGTAATGCTGGGTTTC	alt_5923_new	0	0	0	0	0	0	0	0	0	0
CCCATCATTGCAACTG	alt_5923_new	0	0	0	0	0	0	0	0	0	0
CTATAGTCGTGATTTG	alt_5923_new	5	5	4	3	6	4	8	2	9	2
AACCATGATGGCTCAC	alt_5923_new	75	123	89	78	117	71	107	60	138	88
CGATTGTATCCAGTGC	alt_5923_new	12	39	11	5	28	7	38	9	37	8
CATTCTAGTGGATCGC	alt_5923_new	15	44	30	29	33	19	33	19	40	26
GCTTCTTGTGAACCAC	alt_5923_new	35	70	39	41	43	32	61	28	50	39
ACTCGAAGTGACTTTG	alt_5923_new	22	45	25	24	45	20	62	24	42	19
TCTACTACGGTCATAT	alt_5923_new	7	19	16	8	18	19	19	7	27	10
ACCGACACGGAAATAT	alt_5923_new	10	18	18	14	20	11	32	8	21	10
GCTGATGTCCGGTGTA	alt_5923_new	63	102	76	56	130	55	109	66	118	48
CGTGGTGTAAACTTGG	alt_5923_new	8	25	16	15	16	6	25	14	22	9
GCACATTAGTTGCTTT	alt_5923_new	41	59	48	44	51	28	56	34	62	39
TCCATAGCCCTCCGAG	alt_5923_new	5	4	6	2	9	2	9	2	4	4
TTTTTAAATAAGGCTT	ref_5705_new	106	123	135	152	119	120	139	113	115	115
ACGAGGGATGGTGGAG	alt_5705_new	22	26	33	25	28	19	22	19	21	21
CCCGTTAACGCCGTAG	alt_5705_new	11	6	8	2	6	5	9	12	1	9
GCGGTCCTAATATGCG	alt_5705_new	33	34	29	23	45	28	35	12	45	27
CCAATTTATTCGATCG	alt_5705_new	27	42	24	27	41	23	46	20	44	12
CTCATTACATGCGCTT	alt_5705_new	0	0	0	0	0	0	0	0	0	0
CGTATGCAAGCTTCAC	ref_5705_new	102	144	149	124	141	78	168	91	175	101
GTCCTGTCTTGTAGAT	ref_5705_new	15	37	42	29	31	29	38	30	30	26
CGTCCCATCTTCGACC	alt_5705_new	15	72	21	18	74	15	62	17	58	17
TCGCTGGGTTTCTCAG	alt_5705_new	67	68	51	48	62	67	90	56	90	61
GTCTGGTTCCCCATTG	alt_5705_new	26	43	42	41	48	35	44	43	47	24
ATTTTCGGTCTGTGTC	alt_5705_new	28	31	31	36	34	33	44	36	42	18
AATTCGGATGGGGACG	alt_5705_new	91	88	112	105	114	88	93	78	101	84
ATTCATGCACACTTAA	alt_5705_new	39	54	44	39	63	33	62	49	65	36
TAGTTGGAAAGTTGTT	alt_5705_new	43	64	60	43	68	52	56	50	56	46
ACTAATAGGTGTTTGT	alt_5705_new	6	12	7	11	7	6	12	5	6	1
CATGCACGACAGTGGA	alt_5705_new	36	24	40	30	32	35	33	19	27	24
TGAACCTTACTTCTGT	alt_5705_new	0	0	0	0	0	0	0	0	0	0
ATTTCAATTTAGGTTT	alt_5705_new	0	0	0	0	0	0	0	0	0	0
AGAGTTTTTGATTGTA	alt_5705_new	6	10	12	5	7	7	7	10	7	7
TTCGCACGAGTGCCGC	alt_5705_new	6	8	8	5	14	10	8	3	17	3
CAGTGTCGCTACATAA	ref_5705_new	150	208	190	172	225	159	226	118	230	121
ACTGGTCTACTTAGCA	alt_5705_new	0	0	0	0	0	0	0	0	0	0
AGTCCTTTCCACGTAG	alt_5705_new	0	0	0	0	0	0	0	0	0	0
GCGGTCCTAGGAATGA	alt_5705_new	10	12	21	15	16	11	14	17	14	10
GTTTATAAGTGACGGA	alt_5705_new	17	11	14	13	15	6	16	12	20	5
TTGGGCTACTGCCTTG	alt_5705_new	0	0	0	0	0	0	0	0	0	0
CGCGGCACGACATGCT	alt_5705_new	23	56	26	14	40	20	48	22	53	24
TACGAAAGTTGGAGCT	alt_5705_new	37	41	39	28	42	26	46	26	40	34
GTGGTGCGGGGGCATA	alt_5705_new	34	69	53	40	54	37	49	42	73	29
TGGGAATCTTTAATTT	alt_5705_new	23	26	26	14	17	16	25	19	21	18
TTCTACCCCCGCGGTG	alt_5705_new	0	0	0	0	0	0	0	0	0	0
AACTGCCTTAGGGATT	alt_5705_new	0	0	0	0	0	0	0	0	0	0
CTCCATGCACATATTT	alt_5705_new	21	34	35	35	34	36	26	36	51	39
CCAGCCTACAAACTTT	alt_5705_new	0	0	0	0	0	0	0	0	0	0
ACGGGCTCATTTCACT	alt_5705_new	0	0	0	0	0	0	0	0	0	0
ATAACTTTTTCTTAGC	alt_5705_new	16	20	27	11	25	12	18	12	15	20
TTGTGCTCCGTATCGC	alt_5705_new	4	5	2	3	2	2	6	4	7	0
CAAGCGAAGGTCTTAC	alt_5705_new	7	21	14	10	27	6	15	6	18	5
AAAGGTTCCCAGTTAA	alt_5705_new	45	51	67	36	51	44	62	47	43	37
ATCGGTTCATGTCCCT	alt_5705_new	62	60	63	45	52	38	69	40	50	45
TTCGCCGGATTTATCC	alt_5705_new	99	73	67	59	98	58	92	56	116	62
TGTGTGACATTATATG	ref_5705_new	0	0	0	0	0	0	0	0	0	0
GTGGCAGTATCATGTG	alt_5705_new	0	0	0	0	0	0	0	0	0	0
ATCATCAAAGGATTGG	alt_5705_new	0	0	0	0	0	0	0	0	0	0
TTACAGCACTGTATCT	alt_5705_new	80	120	95	89	114	68	158	75	140	68
TTCCGCTCTAAGTTTG	alt_5705_new	42	51	58	42	60	54	55	51	48	63
CCATTTAATGCGCATG	alt_5705_new	31	55	43	39	55	37	63	27	53	26
CCCTTGTATGTTCTCA	alt_5705_new	0	0	0	0	0	0	0	0	0	0
GGTGTCTCTGGCCACT	ref_5705_new	32	38	38	24	34	37	44	23	41	28
AAACTGCGGATCTTGG	ref_5705_new	41	30	33	49	30	38	29	35	25	31
ACCGACTTCCTTTTAA	alt_5705_new	24	20	28	27	29	26	23	14	33	16
GACAGGGGTGGTGCGC	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TAGCGCAATATGTTGC	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TACACCCGGCGCCGGC	alt_222_RC	15	28	12	21	24	7	24	22	18	13
TCAGTAACGGTTCCCG	alt_222_RC	12	23	16	20	23	18	30	13	15	20
AGATTATTAATGGTAG	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TGATCGTGTCCCCCGG	alt_222_RC	41	41	50	40	48	51	51	37	57	44
GCCCTTTTTGCTCCCA	alt_222_RC	15	19	14	8	15	15	14	7	17	13
TTGGGTTGCTCTTATC	alt_222_RC	22	24	25	16	31	20	34	29	38	10
TTTTCTGCCTCTTCTT	alt_222_RC	0	0	0	0	0	0	0	0	0	0
GCACTTTAATCATTTG	alt_222_RC	17	35	21	24	34	15	33	16	38	14
AATTGCACACCTATAT	alt_222_RC	17	21	29	28	37	21	29	25	40	21
CTTTTACGTCCAGTAT	alt_222_RC	12	9	11	13	11	10	6	7	8	4
CAGAGATAAACTTAAA	alt_222_RC	1	3	5	1	3	0	2	3	0	1
CTACGCCTCTACATGT	alt_222_RC	35	45	46	43	70	28	44	32	39	45
ACACAAACGAGCCCTC	alt_222_RC	14	22	16	10	22	12	23	12	19	7
CCTATTCATCAGTACC	alt_222_RC	2	0	3	0	2	2	4	2	0	2
TGTCTAAGTTGCACAT	alt_222_RC	3	6	4	10	8	6	8	9	11	7
TTCAAGTAGCTTGGAT	alt_222_RC	6	12	11	10	17	10	29	9	18	13
GGACCTTACTCTTCCA	alt_222_RC	9	12	16	15	21	14	12	15	14	10
GGCCATTGTGCGTTAG	alt_222_RC	0	0	0	0	0	0	0	0	0	0
GAACCTTCATTAGGCC	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TTGGGGCGCATTTTTC	alt_222_RC	67	90	75	57	87	65	80	71	88	56
GAACCCTGTCCTTTAT	alt_222_RC	22	36	23	13	29	30	35	24	46	16
GTGCATTATACCTTCT	alt_222_RC	285	325	349	308	352	278	379	275	400	263
CATTTTTTATTGTAGT	alt_222_RC	23	41	25	19	18	22	26	16	23	15
ACGTCTCTGCTGAGCT	alt_222_RC	105	169	135	126	172	104	178	114	166	104
TTGCACCGGGTTTACC	alt_222_RC	47	102	70	71	81	39	91	51	82	34
CTTTCTTTACATGTGA	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TTCACCGGATTCGACT	alt_222_RC	5	12	2	12	12	3	15	6	13	5
CTTGACTCGTTACGGT	alt_222_RC	8	16	6	11	23	20	13	8	28	12
ATCCTTCGAATCAGGA	alt_222_RC	6	10	10	4	14	6	12	7	23	8
CATCGAGCTTGTCTGT	alt_222_RC	33	37	39	41	43	35	38	31	49	35
GCCCCCTGAAGGAATG	alt_222_RC	35	53	75	44	43	38	65	40	76	29
ATGTTAACGCAAGAAC	alt_222_RC	26	28	24	16	24	23	28	18	36	20
ACAGGTTGCTATGAAT	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TTCTGTATGAATTGTT	alt_222_RC	15	7	13	13	9	16	13	12	9	12
TATATCTGGTCGTATA	alt_222_RC	0	0	0	0	0	0	0	0	0	0
AGTTTTCTCATAATAT	alt_222_RC	19	15	27	20	28	15	15	17	18	23
TTACTCCCGGGGCAAG	alt_222_RC	0	0	0	0	0	0	0	0	0	0
AGCCTAGCTTAAGTAC	alt_222_RC	3	2	0	4	7	3	9	1	9	0
AGCAGTCTTCCGAGTC	alt_222_RC	39	183	55	52	177	43	163	37	183	40
AACTACAGCGTTTCCA	alt_222_RC	17	19	11	15	11	11	14	12	31	13
TGCCCTATTATTGTCC	alt_222_RC	17	10	8	11	10	14	16	10	9	12
CGCGAAATAGCACTCC	alt_222_RC	2	9	5	2	8	3	6	3	1	5
TATCTTTCACCCGGTG	alt_222_RC	58	73	77	52	75	56	76	58	85	46
ACCATGGTTTCTACAA	alt_222_RC	7	11	11	16	9	7	13	6	17	4
TTTATTCCTCGGCATG	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TCCCGGCGGACGACCT	alt_222_RC	15	11	23	18	22	16	19	12	17	11
CGTTCATCACCCAAAG	alt_222_RC	57	72	70	71	86	54	92	58	76	59
ATTGCTGCCTAACCCT	alt_222_RC	42	42	41	14	40	32	35	24	34	31
TTGTATGGTGCGTTGC	alt_222_RC	17	21	19	24	25	13	20	18	28	21
GTTACTTTGCGAGTAA	alt_222_RC	44	61	57	47	60	37	53	53	67	36
TTGTGTTCCTAGCGCC	alt_222_RC	32	47	54	35	49	36	57	30	53	31
AAAGATTTGATTTTCG	alt_222_RC	0	0	0	0	0	0	0	0	0	0
GTTCATATGCTGAGGC	alt_222_RC	12	9	13	9	16	14	18	17	15	4
TTTCGTTCTAGTGTTG	alt_222_RC	0	0	0	0	0	0	0	0	0	0
GAGAAGTATTATCTCT	alt_222_RC	0	0	0	0	0	0	0	0	0	0
TGCTTCTTTGATGGTG	alt_222_RC	153	134	189	168	203	151	204	121	202	117
TTCGATGGTGTGCTAA	alt_222_RC	6	15	10	9	14	3	8	3	9	3
CGTAATAATGCTGTCA	alt_5194_missing	0	0	0	0	0	0	0	0	0	0
TCTACCGTAAATTTTT	alt_5194_missing	47	28	62	46	35	41	23	44	37	37
GCGACTATCTTTTCAT	alt_5194_missing	236	108	310	299	141	225	120	268	131	249
TTTAGGCCGGAGATAT	alt_5194_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTGAAAAATACT	alt_5194_missing	353	147	424	339	169	293	169	336	172	302
CAGATCTCGTGTTTTT	alt_5194_missing	0	0	0	0	0	0	0	0	0	0
ACACAATATCTACCTG	alt_5194_missing	45	29	86	73	36	52	38	55	31	60
TAGGATAATTAGATAT	alt_5194_missing	73	38	78	65	35	66	34	65	32	52
TCCGTACGCTATTCCT	alt_5194_missing	0	0	0	0	0	0	0	0	0	0
GTCGGGCCGGCCCCAT	alt_5194_missing	46	23	59	63	27	55	21	38	34	48
AAGCACCATGTGTGTA	alt_5194_missing	0	0	0	0	0	0	0	0	0	0
GACTCCTTCCGGTTAT	alt_5194_missing	16	6	17	10	7	13	7	11	7	10
GATTTAGGTAGCCGAC	alt_5194_missing	0	0	0	0	0	0	0	0	0	0
CATAAGGGCTTACGCG	alt_5194_missing	15	13	24	30	19	21	17	22	14	28
CATCAACCTTAAAGTT	alt_5194_missing	26	24	36	28	30	20	32	35	40	26
CCATGTAAGCTGTTGG	alt_5194_missing	37	18	43	37	21	32	15	34	25	27
TGTTCTCGGTCTTACA	alt_5194_missing	135	60	151	138	69	123	54	124	92	115
GCCTTGCGGACTCTTG	alt_5194_missing	65	37	81	68	36	83	47	74	54	63
TTTAAGCAAATACTGT	alt_5194_missing	56	41	103	84	36	87	39	70	47	55
TGGGTCCCTGTCGATC	alt_5194_missing	0	0	0	0	0	0	0	0	0	0
CACCTTCACCGCTACC	alt_5194_missing	42	29	62	43	30	42	30	45	30	50
ATGTCCATATTTACTT	ref_3975_upstream	42	14	62	54	13	53	17	48	28	52
CCCCGGTCGGGGTAAA	ref_3975_upstream	46	23	56	39	21	32	23	45	19	36
TGCACCCTTGTCCGGA	ref_3975_upstream	750	140	1025	892	152	786	146	763	146	706
CGGCTTCGGCGTGCTT	ref_3975_upstream	267	39	384	305	45	293	36	278	56	263
ACGTGTGCCACGGCCC	ref_3975_upstream	89	9	122	115	28	95	19	106	22	84
ACTACTGCTCCGATGC	ref_3975_upstream	908	128	1098	939	140	846	137	854	170	744
TCGTCTGTACCCCCCC	ref_3975_upstream	10	2	7	31	6	17	5	5	5	13
CTTCCCCTTTCCAGCA	ref_3975_upstream	207	56	240	208	64	187	51	188	61	189
TAGGGACAAGCGGCAT	ref_3975_upstream	73	15	99	111	23	95	18	93	19	93
TATCTAGGTTTGTGGG	alt_3975_upstream	91	36	125	109	53	114	29	93	47	105
CTCCCCCCGTTTGACG	ref_3975_upstream	152	42	241	202	45	189	43	194	52	156
CAATTGATAGACTAAG	ref_3975_upstream	362	74	458	426	62	367	77	390	69	292
ACACTAGCACCCGGAC	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
CTCAGCCGGTTTTGAT	ref_3975_upstream	4	15	5	15	12	10	10	11	22	6
ATTGTGTGCTTCTTGA	ref_3975_upstream	127	24	130	150	25	123	22	120	25	119
ATTCACTCTTTCGTTG	ref_3975_upstream	1184	162	1430	1243	190	1093	209	1067	221	990
TTCGCGTTTGTGGTAA	alt_3975_upstream	545	221	705	570	207	565	238	439	235	438
CGTCGTATGTTACCCA	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
GTCAGTTACGTCTGTC	ref_3975_upstream	541	116	648	548	96	506	99	408	91	463
CAACCGTGCTAACCTA	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
GGGGCCTTATAAATCC	ref_3975_upstream	804	117	911	781	114	751	152	736	137	600
GCGATGATTGTTGCGA	ref_3975_upstream	469	78	561	526	79	461	83	449	94	430
CAGAACTACATTGAGG	ref_3975_upstream	811	129	967	916	158	745	159	774	155	639
GCAAACAGGCAACTGT	ref_3975_upstream	407	72	472	416	68	365	81	371	88	329
TCCTCGTTTCCGCTTG	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGCCTTTCTCCCC	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
TCTTATCGAAATGCAC	ref_3975_upstream	577	95	686	661	123	516	125	570	98	493
TCTGTTACTCGCGGTC	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTTTTATCAGTCT	ref_3975_upstream	432	66	512	421	71	393	70	393	77	355
AATGCCTCCCTTGACA	ref_3975_upstream	119	24	200	151	27	113	14	112	20	113
ACACCCTCGTCCCGCA	ref_3975_upstream	242	36	325	277	46	254	46	266	46	213
GTTATAATGTACCGTC	ref_3975_upstream	703	129	959	887	156	704	114	792	128	599
TGTGTAATAACATCGG	ref_3975_upstream	80	13	61	78	9	55	9	60	15	51
ACTTTAGTAGGTTTTT	ref_3975_upstream	87	13	128	133	23	119	17	91	20	75
GTCCGGACCTAGCGGC	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
GGCGAAATCATGTTAC	ref_3975_upstream	170	33	248	234	42	187	39	172	55	185
GGGTTGCTTACTGTAA	ref_3975_upstream	99	16	157	112	25	83	14	105	17	83
GTATACCGTCCTATGG	ref_3975_upstream	328	56	385	299	46	287	70	264	63	237
GCACTTCTGAAATACT	ref_3975_upstream	767	145	919	865	150	719	157	764	162	658
TCGTACTTAACCTGCG	ref_3975_upstream	83	8	103	109	8	78	10	51	19	76
GTTTTGTATCTGTCAG	ref_3975_upstream	69	13	58	70	14	50	9	47	18	59
AATACCTCGGCTACCC	ref_3975_upstream	54	10	71	85	14	64	9	62	14	53
GTCCCCGGCATCCAAC	ref_3975_upstream	508	78	652	550	99	490	79	465	78	454
TGAATTCCGGATTCCT	ref_3975_upstream	24	0	28	31	3	24	1	21	2	19
ACGCTGTGGTACGCTC	ref_3975_upstream	202	49	274	254	39	192	32	187	39	188
TCTCCTCGGTACCCAG	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAACGTGTTACTT	ref_3975_upstream	939	215	1114	1086	227	807	225	945	178	773
TTAATCAGTCCTGTTA	alt_3975_upstream	191	55	251	191	67	199	85	173	66	163
ATTCACTCTTTCGTGG	ref_3975_upstream	391	63	444	364	78	327	87	338	57	323
CCCTTTTCTCACCGGG	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
TCCTATGTACTTTCGG	ref_3975_upstream	198	28	224	202	31	164	43	185	30	130
GTGTCCGATCGTGTTG	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTGGTAGGACTAT	ref_3975_upstream	242	57	303	253	44	221	46	233	45	210
GCGTGTAAGTTATTCA	ref_3975_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTCCGTAGTGACG	ref_3975_upstream	330	49	375	358	52	295	56	294	47	257
ATTAATGATGGAGTGT	ref_3975_upstream	37	9	51	38	6	46	5	37	13	24
ATATCTTGGTATTTAA	ref_3975_upstream	17	4	13	12	1	3	2	7	3	7
GGCCCCGGCAAAGTTA	ref_3975_upstream	948	154	1184	1112	132	902	149	992	145	836
TACTTCCGATGCCCCC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
GGCTCTTGCTTCCGAA	ref_6026_new	9	15	8	8	29	9	16	12	23	10
TAACATGGATGCTCTT	ref_6026_new	7	5	13	8	6	10	4	6	15	8
TCACTGCCCTTCTTGG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CACATTTCTCAATAGC	ref_6026_new	5	21	8	17	22	12	23	5	19	10
TTTTTGTAACTGCTTA	ref_6026_new	38	77	40	35	53	20	76	29	77	27
TATTATTCTCGATAAC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TGATGCGGGTTACCTA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
GGAGTATGCCATCAAC	ref_6026_new	0	5	1	0	2	2	5	2	4	0
AGGATTCGACATCGGT	ref_6026_new	8	10	7	5	16	9	9	10	15	6
TTGTAACATGTGTCAA	ref_6026_new	2	11	9	4	2	3	10	9	9	2
AAAATATACGGTTGCA	ref_6026_new	22	28	31	22	42	27	28	10	34	21
CGCGTTGGCTAATGTA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TTGATCCTTATCAGCT	ref_6026_new	9	43	19	23	29	25	47	22	33	15
TGCTTGTGGCCACGTT	ref_6026_new	30	49	47	47	49	37	71	29	61	27
ACCTGATAACCACCTC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TACTGAAACTCTAACC	ref_6026_new	33	79	34	39	83	35	64	48	69	28
GTGTTTACTCGCCTTC	ref_6026_new	56	71	33	44	64	37	70	38	87	35
TGAATACATGCGGTGA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
AAAATTTTTCTGATCT	ref_6026_new	29	23	35	15	20	17	27	12	24	19
AGTAATACCATATGGC	ref_6026_new	10	12	8	4	9	8	11	5	20	1
TAGGACGGAAGTCCGG	ref_6026_new	1	1	2	4	2	3	3	2	5	1
GGCCATTCCGTGATTT	ref_6026_new	32	12	45	27	10	35	21	33	15	28
TGGTTGGGCATACTTC	ref_6026_new	9	13	14	12	14	8	13	10	19	8
AGGGGGTTATGGACGG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
GTATTGATTTTTGGTA	ref_6026_new	76	143	96	88	122	86	129	88	166	63
CCCCTTAACGCTTCAT	ref_6026_new	0	0	0	0	0	0	0	0	0	0
GTAGAATGTGCTCGTT	ref_6026_new	8	13	17	3	7	6	15	7	19	10
CCAGCATTGTCAGCGC	ref_6026_new	1	13	7	6	24	1	26	6	28	2
AGTTATATGTCAGCAC	ref_6026_new	16	29	22	30	30	25	37	20	41	20
CACGTACGAACACCAG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
GCTAACTGTGCATCTC	ref_6026_new	17	29	20	18	32	8	27	19	31	19
TTTCTGCCTACTGTTT	ref_6026_new	0	2	2	4	1	0	8	5	4	1
GGGGCTTTAGTGGTAG	ref_6026_new	14	20	21	13	26	21	20	14	17	10
TTTGCCTATTTCGTTC	ref_6026_new	16	17	28	18	38	21	33	22	39	13
CGCGGTGTTTCTAGTG	ref_6026_new	5	25	9	9	20	7	25	6	31	6
GTTTTGAAGGGCCACT	ref_6026_new	44	55	52	29	70	36	68	38	55	38
TTAGCGTTGGCGCCCG	ref_6026_new	4	2	2	3	0	2	4	2	4	1
CATCGGGAGGTTTCAC	ref_6026_new	15	21	19	12	24	16	15	10	22	4
ATTGGCCAGCGGTGTT	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TCGACAGCATGTTAGT	ref_6026_new	26	38	21	25	42	31	33	19	62	24
CTCTTGTGTCACCATA	ref_6026_new	9	25	15	14	34	9	22	17	25	13
ACAATGCTCCCCTGCC	ref_6026_new	2	17	3	1	12	2	12	2	18	1
TGGCTATTATGGAGTT	ref_6026_new	4	7	11	4	16	6	13	3	12	5
CGTCGTTGTTTTACAA	ref_6026_new	66	94	83	52	99	60	103	61	126	53
ACGGACACTCGCACCA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TTCACCCTGACATAGA	ref_6026_new	3	18	9	9	18	8	14	12	12	7
CGCTTCAAGATTCCTC	ref_6026_new	130	176	157	120	198	122	160	126	218	134
AGTCTTTCCCTGTGGG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CGTTTAACGCCAGTTT	ref_6026_new	8	4	4	5	9	1	13	3	6	8
GTAATCCCGTATTTTA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TGAGGTTATACGCGGG	ref_6026_new	19	35	20	19	27	17	21	18	31	20
ATGAAGAGCGCCCTTT	ref_6026_new	10	15	5	6	15	7	12	9	15	4
TACTCGGTCTCGGACG	ref_6026_new	2	4	4	5	7	1	7	2	4	3
CATTTATTCTGGTTCC	ref_6026_new	0	0	2	2	1	0	0	0	0	1
GCGCGTTTTTAGCTTT	ref_6026_new	1	6	5	7	6	6	7	3	11	1
GTCCAATTTAGGTTAT	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CGGGCACCAGAATAGC	ref_6026_new	60	88	68	42	84	47	100	50	75	43
CGCTTGTTCCGGCTTT	ref_6026_new	34	93	42	46	79	38	74	33	80	42
ATTATTGGAGCGATTC	ref_6026_new	23	31	20	17	30	18	38	17	24	13
TGCTGTTGCAGTCCGT	ref_6026_new	9	24	15	4	26	10	12	19	17	14
GTCAGCCGGACTCCAG	ref_6026_new	9	40	7	11	23	9	29	14	29	19
TGTGTTGTCCCACGTC	ref_6026_new	5	7	7	8	9	7	11	5	6	7
TAACTCGTTCAATACA	ref_6026_new	3	16	9	12	14	9	15	6	18	6
AGGGCCAAATTAATTT	ref_6026_new	8	12	7	4	9	3	9	4	12	5
AGCGTCAGGCTTCCCG	ref_6026_new	28	24	21	21	22	18	26	24	32	14
AATTTTTGACGTTCCC	ref_6026_new	46	77	59	53	86	46	103	47	100	50
TGATTTGCTGGCGACC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CTACTGACCCTGGATT	ref_6026_new	21	28	25	15	26	10	39	11	31	19
GTATCGGTAGCGAATG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CGCAGCTCCCTGGTTG	ref_6026_new	6	11	3	9	12	5	13	6	9	4
AGGATTGTACTTTGCA	ref_6026_new	28	27	22	22	41	21	36	19	49	16
ATGTTTTTGGAGATTC	ref_6026_new	7	3	7	3	12	6	10	8	8	3
CTCGGCGAATCTTTTT	ref_6026_new	19	35	40	22	32	32	32	17	22	13
TATCGGGCTTTCCGTC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CTGTGCCATGCTGATG	ref_6026_new	28	50	25	29	54	26	53	21	56	25
CGATAGAGGTGGTCTC	ref_6026_new	22	30	23	18	32	24	35	17	28	10
TTGCTTCTTTTCGGCT	ref_6026_new	14	25	19	10	18	10	14	5	25	11
GGGCGTCTCGTTAGTG	ref_6026_new	6	10	5	7	10	10	11	2	7	6
TAGTGGTTTACAATAG	ref_6026_new	20	38	35	37	41	26	45	17	46	30
GTCACTAACTGATGTC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TGACCCCAATCCATTA	ref_6026_new	35	52	28	28	46	31	54	21	37	27
CCCCATTTGATGTTTT	ref_6026_new	28	74	62	33	87	38	79	55	73	27
CGTCAGCCAAAGAGTA	ref_6026_new	7	15	6	7	14	8	8	9	12	10
AAAGAATTCCTTGTTT	ref_6026_new	19	35	29	33	39	21	36	21	28	23
ATACAGGCCCCCCGCA	ref_6026_new	0	17	1	1	19	2	18	3	20	1
ACCCCGTTTTTATAAG	ref_6026_new	8	8	6	9	10	5	6	8	11	6
AGTTTCAGGTTTCAGG	ref_6026_new	29	38	23	27	41	13	27	19	16	23
CCGTGTGTGCTTGGCC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
AACAAACGTACATAAA	ref_6026_new	17	16	20	21	21	13	22	12	35	16
TTCCCGGGTCTGAAAA	ref_6026_new	4	3	3	2	7	1	1	4	6	1
CTGGCCAGCATACTCG	ref_6026_new	6	17	16	10	12	17	24	6	20	8
TGTTAGACTCAGATCA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
ATTTCGATGTGGGTAA	ref_6026_new	116	137	101	78	144	113	151	85	153	81
CTCGTCACACCGAGGG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TGACGCCGTTATTCAA	ref_6026_new	5	3	2	6	3	0	2	0	6	1
TAATATTGCTTGATTC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TGGTGCTTTAATTGCC	ref_6026_new	14	24	10	12	31	21	29	10	31	15
CTTTTATCCTGAGGTT	ref_6026_new	58	88	56	51	90	48	111	37	108	60
CCAATGTCCGTCATAT	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CTCCAGGCCATTATAC	ref_6026_new	55	146	73	50	118	59	106	78	153	57
GGCATCTTGTAAGTGA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
GGGCGTGTTCGTCTTC	ref_6026_new	37	69	46	49	96	44	78	38	86	34
GTTATGGGGGGTATTG	ref_6026_new	3	0	0	0	0	0	0	0	0	1
GTCCACAAAACGTTTA	ref_6026_new	12	29	23	15	32	25	37	16	25	19
TCGCAGGACGGCCTGC	ref_6026_new	77	106	93	71	94	55	107	55	98	36
GTGACGGATAAGCTTG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
GACACTCTTAGTTTCA	ref_6026_new	13	30	20	19	31	8	19	10	30	16
TGACAGTGACGTCCGC	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TACATCATGCTGGATT	ref_6026_new	57	74	47	54	58	54	72	49	81	45
GGCATCGCTGCCAGAT	ref_6026_new	13	22	29	22	28	12	23	14	21	12
TTGGATATTAGGCCTC	ref_6026_new	24	32	21	18	24	15	37	11	32	14
GCTGGTTAGTGCTTCC	ref_6026_new	6	16	9	5	14	6	16	7	18	5
AGGTTCTATAGTTTTC	ref_6026_new	68	102	65	54	95	56	77	45	90	45
TTCTAGTTTCGATTGT	ref_6026_new	18	39	15	16	44	15	47	14	29	20
CATTTCTCCTGTCCTA	ref_6026_new	7	11	10	5	21	11	19	7	19	3
TTGTTATGTACTAAAG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CTCTCAAGCATCCGAT	ref_6026_new	46	72	62	48	75	39	83	43	76	37
ATTTAATTCTACTGTT	ref_6026_new	21	22	28	21	23	21	40	20	45	19
ATGTAATTGACGGTAG	ref_6026_new	17	52	17	22	31	33	50	34	62	16
GGTTCTGGGCGAGAAC	ref_6026_new	25	40	21	26	32	21	42	19	44	17
ACCCTTACGCTCGAAC	ref_6026_new	10	19	12	12	17	16	23	11	24	6
AAGGCGGCAGCTTTAA	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CAACTCCGTCAAAAGA	ref_6026_new	5	17	2	3	6	2	9	7	7	3
TTCAGGTAGTTCCTGT	ref_6026_new	16	44	24	21	46	27	46	17	41	14
CAGGGTGCCCATTCGT	ref_6026_new	11	35	28	24	41	21	51	26	35	17
ATCACGACAAACGACA	ref_6026_new	6	2	2	5	4	0	1	1	1	2
GTACGCTTAGGTGGCA	ref_6026_new	8	23	8	10	10	7	17	11	23	7
CTACACACAAGAGCAC	ref_6026_new	9	13	7	9	17	7	15	4	5	4
GTGCTACTGCCTAGCG	ref_6026_new	30	26	35	25	34	23	35	20	53	14
GTCTCATACTGAAGTA	ref_6026_new	9	18	14	15	17	13	15	4	18	6
CCCTGCTGTGTCGTTG	ref_6026_new	0	0	0	0	0	0	0	0	0	0
TCTTTACAACTGACAG	ref_6026_new	33	74	40	20	77	44	87	35	88	40
ACTTCTCGCCCGTCTC	ref_6026_new	1	2	2	0	7	0	7	0	7	0
TGTTTTCCTTCTTTCT	ref_6026_new	11	10	9	4	5	2	6	15	9	10
ATACACGAGTGTTACC	ref_6026_new	7	5	4	3	2	4	11	5	8	4
TAGCTATAGTTCTAAT	ref_6026_new	0	0	0	0	0	0	0	0	0	0
CCTGCCTTTGCAGGGG	ref_6026_new	5	18	9	10	17	9	15	9	13	8
GCAAGATTGTCCGTCT	ref_6026_new	3	15	15	2	17	6	10	3	9	6
CACAATTAAGATGCTA	ref_124_missing	0	0	0	0	0	0	0	0	0	0
GGCCCTATTATCACCG	ref_124_missing	0	0	0	0	0	0	0	0	0	0
TCAATCTCTAGGGCGT	ref_124_missing	21	16	19	18	28	14	20	14	25	12
GTGCGTGGGAGGTTTT	alt_124_missing	42	40	47	42	41	53	53	36	49	28
TGCTGGGCCCGGGGCC	ref_124_missing	13	15	16	11	19	15	16	14	28	14
TATCTAGACTATTTGC	ref_124_missing	0	0	0	0	0	0	0	0	0	0
CACACCAGAGATTAGG	ref_124_missing	0	0	0	0	0	0	0	0	0	0
TAGCACAACACAGTGT	ref_124_missing	28	48	12	32	48	17	66	18	83	22
GTTCGTACAATTTTTC	ref_124_missing	12	29	17	15	20	13	20	13	22	10
ATTGAGCATGACATAG	alt_124_missing	33	67	39	29	61	35	78	32	82	32
CAGTGGGGCGGCCGGG	ref_124_missing	18	26	25	28	23	18	14	15	28	23
ACGAAGGCAGGTGATG	ref_124_missing	4	5	5	6	5	6	7	2	12	6
TGCAAATCATCCGGAT	ref_124_missing	18	21	14	10	7	5	13	11	8	8
CGTAGTGGCCCTGGTA	ref_124_missing	9	6	21	12	20	8	3	12	13	6
GCATCTCGGATATGCA	ref_124_missing	65	77	96	58	87	58	98	60	120	52
ACCCAGCTAGGTCCTA	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GTTATCGGTTTGTCCT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CTCATTGTACCATAAA	alt_5698_new	33	23	39	44	31	30	28	43	51	38
GGTGACATGTTGTTCT	alt_5698_new	11	5	8	12	4	5	3	5	5	7
TTTTTGTTGGTAGAAC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CGAGCATTAGGGTCAG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TCAGTATGAACCTTTG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TAGCCTTTCTGGCTGC	alt_5698_new	47	22	67	35	32	37	42	36	33	47
TGGCCCATGCCTTGTG	alt_5698_new	41	23	61	48	14	47	23	58	29	46
TGGCTCCATGGCACAT	alt_5698_new	20	16	34	40	14	27	19	26	14	29
GTGTAACGCTATTCAT	alt_5698_new	74	39	71	63	32	38	36	65	31	59
ACATACAAGTCGCAGC	alt_5698_new	72	35	70	63	34	53	31	66	30	44
ACGGAAAGGAATATAT	alt_5698_new	85	49	86	91	40	62	41	54	55	64
CCCATGTGTCCCCGTC	alt_5698_new	26	23	42	22	14	24	14	32	19	27
ACAGTTGGTATTGAAT	alt_5698_new	16	4	16	16	12	8	5	18	12	17
GGCACAATCGGGGCTT	alt_5698_new	58	56	80	72	56	68	62	71	70	63
TTTCCGCCGCCTTTAC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TGCACGTGTATTATCT	alt_5698_new	78	49	83	91	59	83	63	93	71	88
TCAACTGCTATGCTTT	alt_5698_new	178	83	217	180	93	157	97	149	74	150
GGCCTTGGTGATACCG	alt_5698_new	63	26	86	66	38	70	33	58	40	46
TTCAGATACCCATGAT	alt_5698_new	14	12	20	22	12	29	9	22	16	17
AAAGCACCTCATATTT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TTTAGAGGCTCCTCTA	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GTTTTCTGACGTGGGT	alt_5698_new	33	28	52	39	24	32	19	50	40	31
CGGTGGGCCGCAACAT	alt_5698_new	251	117	317	281	147	259	137	239	143	264
AAAGGTTATGGCTCAT	alt_5698_new	181	103	204	162	84	208	101	190	114	138
CGGCTAGGGTTCAGTT	alt_5698_new	21	8	15	14	14	16	12	21	8	19
TGTGGATAAACGCATG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CTTGCCTGGTCTCAGT	alt_5698_new	13	22	47	24	23	25	23	36	30	17
CTCTGGCCAAGCACAC	alt_5698_new	18	19	22	32	10	19	22	17	15	21
CAACAAAACGATAAAC	alt_5698_new	78	57	86	85	56	74	53	76	43	70
CACGATTTCAAAGGTC	alt_5698_new	26	25	21	41	24	20	24	31	11	34
TTCCCGATTTCCACGG	alt_5698_new	49	21	40	53	22	31	18	42	25	32
TCAGGTGTTGTTCTCC	alt_5698_new	3	4	2	2	6	5	4	3	1	6
GGCTGCTCTACTCGCT	alt_5698_new	227	116	275	243	125	231	126	196	134	195
GCTGGAGGCAATACGA	alt_5698_new	20	17	34	21	15	25	5	22	10	16
TCAGTCAGGTTTCGAA	alt_5698_new	0	0	0	0	0	0	0	0	0	0
AGGAGCAAGGGAAGTA	alt_5698_new	42	23	62	45	20	50	31	54	33	43
TTTAGCTCTAGAACAG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GCTAAGCTGTAATTCC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
AGCACGCACCGGAGCC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TTCGTATGCGTCAAAT	alt_5698_new	22	25	33	24	13	23	17	33	22	16
TGGGATTAGATGGTCG	alt_5698_new	145	97	236	196	103	199	108	188	104	155
CCTTCACGTCTCTGGC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTACTGTTTGG	alt_5698_new	22	3	16	20	17	17	11	9	13	22
TTTAACGCGGTCGAAG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CGTGGTCAACCGACCT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
ACTCCATCGATGGTAA	alt_5698_new	22	10	31	30	20	23	27	22	27	24
GATGAGCTTCTTTCCA	alt_5698_new	883	485	1158	922	414	951	461	886	503	859
AACCGTATGGTCGCAA	alt_5698_new	45	23	83	45	20	71	27	41	26	50
CTACGCAAAGCTCAAG	alt_5698_new	26	12	18	19	20	14	14	15	14	26
TTGTCGGCGCATGAGC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
AAGTTAAAGTTTCGTA	alt_5698_new	88	54	102	86	59	70	59	108	53	72
CGCCCTCCATCAAACA	alt_5698_new	22	11	15	17	11	18	20	21	12	15
ATTATGGGCGTTCAAT	alt_5698_new	20	24	18	22	11	10	14	28	15	16
TCTCCATAATGTGTTT	alt_5698_new	174	87	193	178	79	160	77	135	100	137
ATATGCTACTATTCGC	alt_5698_new	31	16	30	20	10	20	14	31	13	15
TTGGGCCCGTCGTGTC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TGAGTGAGTGTCACAT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GTACAGACCGGATATC	alt_5698_new	26	22	18	25	18	23	17	34	18	14
AGGCGCTTAATGATAC	alt_5698_new	16	10	19	12	11	10	10	16	4	12
TCCGGACCCGTCTCTT	alt_5698_new	82	47	94	82	53	59	63	64	59	61
TAGGGTCCTATCTTTT	alt_5698_new	136	79	185	162	92	145	85	144	74	128
TGGCAGGCCCCTCCTG	alt_5698_new	99	57	121	100	60	101	67	101	56	83
GGCGGTTTACTGCTTT	alt_5698_new	26	13	17	15	13	17	21	17	15	13
GTGGATTCACCAATAA	alt_5698_new	36	20	45	39	30	51	25	37	27	32
GCCTGGGCCCAACCTC	alt_5698_new	20	12	45	29	17	31	17	26	13	34
AAGGCTAACATATTTT	alt_5698_new	10	2	0	1	3	0	4	1	0	2
TGTGGTCTTTGACTAG	alt_5698_new	27	18	39	35	31	18	19	31	25	27
AGTCTTCGTTCAGAGG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TTTGTCCTTCCTTGCA	alt_5698_new	96	50	111	72	31	58	53	65	45	105
AGCAAGCAGACCTGCT	alt_5698_new	11	5	15	15	2	17	7	10	5	13
TCGGGCTGGCATACGC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CACTGAGCCGGGGTAT	alt_5698_new	104	61	139	127	53	96	58	96	61	89
ATGAGCCGCTTGGTTA	alt_5698_new	188	131	319	248	123	162	139	214	143	178
CGTTTTGGCCTTACCA	alt_5698_new	57	30	58	59	35	68	33	72	49	57
CCTTCTCTCGCGTATA	alt_5698_new	3	13	12	15	4	5	7	10	7	15
AGGGCTGTGCTCTCTG	alt_5698_new	94	78	127	97	75	96	70	102	79	90
TCGTATGATCATGCTA	alt_5698_new	0	0	0	0	0	0	0	0	0	0
AGCGGTTTGTTTTTTG	alt_5698_new	34	23	45	23	15	42	24	40	21	34
CATCTTTTACGGAAAG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CTGTTGACTCTAATGG	alt_5698_new	121	63	144	119	68	121	81	123	72	127
CCTTTTTATCCACGCT	alt_5698_new	221	136	305	220	164	216	133	243	182	191
CATTTATAATCCATTT	alt_5698_new	31	10	18	32	30	28	15	30	21	30
TTTCGTGCATACTCCT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
ACATGCCGTACAACGC	alt_5698_new	31	25	63	54	20	32	22	39	17	45
TCTCTGTTAGGTCCGG	alt_5698_new	35	37	53	43	29	41	21	55	29	33
GTGCGCACCTGTCCCC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
ATCCTCGTGCACCTCT	alt_5698_new	148	85	198	147	86	153	81	126	83	154
ATTCTGCGTAACTAAG	alt_5698_new	360	218	466	399	235	359	231	346	246	307
TGTTTGGTACCTTTTT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CCATAGAAGTTGATGG	alt_5698_new	32	57	64	59	61	36	65	57	43	33
ATGCAGGCCGTTTTGA	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CCAGAGAAACGCTAGT	alt_5698_new	37	27	65	42	15	40	23	41	15	26
GTCCGTGCTGTGGCGT	alt_5698_new	36	24	45	53	24	44	16	34	21	37
TGACGCGAACACCTGT	alt_5698_new	109	73	202	133	93	128	80	116	72	104
TGTTGTCCGGGACGTA	alt_5698_new	2	0	4	5	1	3	2	1	4	4
ACACTACAGGGCATTG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GGGGCTGTGTGCTTCA	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GACAGTTGTCAAAACC	alt_5698_new	74	35	85	73	51	53	63	70	60	62
GCGCTATTTTTTTAAT	alt_5698_new	79	43	85	83	49	80	48	67	51	69
TTAGCCTCTAATATAA	alt_5698_new	68	43	75	63	46	71	43	86	59	46
CTAGAAACGATAAAAC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CGCAACTGTTGGTCGA	alt_5698_new	52	43	74	68	53	58	46	79	45	54
GCACACGGGCCCTCTC	alt_5698_new	36	24	51	48	29	42	22	45	42	36
CGTTACCGTTGGTCTT	alt_5698_new	42	38	52	58	43	56	30	51	43	42
CAATCGGGATTCGATA	alt_5698_new	15	4	14	12	9	7	11	8	8	13
CATATATCAGCAGATG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TCAAGCCCCGTTGATT	alt_5698_new	24	20	40	47	22	32	20	26	24	28
AACGGGTTTCGATATC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CCCTCCACCATTGTAC	alt_5698_new	4	0	1	0	0	3	0	2	1	1
ATATCTCCCGGGGTGC	alt_5698_new	16	41	31	25	47	25	38	23	31	16
ATCAAAGCATAATTCC	alt_5698_new	49	28	79	50	32	59	27	52	35	40
GCTCGTCCTTAAGTTC	alt_5698_new	94	52	125	73	53	102	48	74	58	60
GGCCTTCCATTATTTC	alt_5698_new	18	13	37	38	20	29	15	24	16	22
CTGACTGCCGTAGGGT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
AAGCGTCTGTCGGCAA	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TCACAGTCCCTAAATG	alt_5698_new	22	13	33	23	26	32	19	37	16	19
CTCTTACGAGCGTGTT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
ATCGTATGAAGACAGT	alt_5698_new	199	122	234	182	126	174	117	194	94	141
CATAAGTCACTAAATG	alt_5698_new	35	24	38	40	36	35	26	34	43	38
CTACTCCGCGCCTGAA	alt_5698_new	73	41	68	55	32	47	26	61	33	52
CCCCCTAATTCGAGAG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
TGCAAATTCGCGATAG	alt_5698_new	60	43	54	68	59	39	43	57	50	57
CGACTTCATACAACGT	alt_5698_new	75	57	91	102	41	76	52	59	56	81
TGTGGAAAGCTGGAAG	alt_5698_new	23	13	34	21	19	30	13	25	30	24
ATTAATTAATGTACCA	alt_5698_new	11	9	23	25	3	19	6	13	10	12
CCGTCTTGAGTAAGGC	alt_5698_new	15	8	6	17	17	6	15	9	19	0
TCGCTACTTTGGGCGT	alt_5698_new	33	20	46	35	27	30	21	46	22	25
TCACTTCTTACCGTCT	alt_5698_new	57	36	50	36	39	42	26	39	42	44
ATAACCTAAGGACGAC	alt_5698_new	57	57	44	55	37	39	39	45	34	47
ACGCTTCCTTCGCAAT	alt_5698_new	0	0	0	0	0	0	0	0	0	0
CGCAGTTACGGACCCC	alt_5698_new	231	142	302	259	129	224	122	234	98	200
GCACACAATCTAGGCA	alt_5698_new	1	0	4	4	1	2	0	1	0	0
GCCGCCTGCGAGGTAG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GTACCTTGCTTGCCTG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
ATACAGCCCACTATCC	alt_5698_new	0	1	4	2	1	1	1	6	0	0
ATGCCGGTATTAGTTG	alt_5698_new	23	12	38	24	14	30	20	27	12	16
TTTCCCGCCGAAGTGC	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GCTTCCCGTGGCCCTG	alt_5698_new	0	0	0	0	0	0	0	0	0	0
GTTTATCCTGCCGTTA	alt_5698_new	105	41	99	98	53	89	43	100	56	79
AATCTGACCGTGACCT	alt_5698_new	30	13	27	26	17	24	20	23	21	25
GCGTCCCGGAGGGAAT	alt_5698_new	13	7	25	11	14	9	13	20	10	11
TCCAAATTTGTCCAGT	alt_5673_new	340	349	409	298	354	308	388	288	387	241
TGGTTTGCAGTCTCGG	alt_5673_new	0	0	0	0	0	0	0	0	0	0
ATATAAGATTCTATGC	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GCCGAGTAATCTAGTC	alt_5673_new	37	34	43	19	33	25	29	40	23	31
CAAAGTCTTCATCGTC	alt_5673_new	56	55	61	49	53	42	42	43	54	43
CGTATGCGTGGAATCA	alt_5673_new	29	27	45	35	24	32	49	26	25	32
CTTTGTACGAATTACT	alt_5673_new	22	17	21	22	19	7	32	15	20	16
TCATGGGCTGTTTTCA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
CGTGATGCTTGGAGTA	alt_5673_new	15	18	33	17	13	14	24	18	17	18
TCGTTCACGTGGTGGC	alt_5673_new	7	5	5	4	2	10	17	4	5	7
CTATTGAGCCTTATAA	alt_5673_new	100	124	117	118	119	99	98	122	123	94
CGTACATTGCAAAGCT	alt_5673_new	175	140	217	153	162	158	172	146	180	156
CTTTGTGTATTTGGAC	alt_5673_new	0	0	0	0	0	0	0	0	0	0
CCAGCCACATTCTCGT	alt_5673_new	7	75	5	5	82	5	90	3	103	7
TATATAATCTCGCGCT	alt_5673_new	90	142	101	81	122	102	161	93	134	75
GAATAGTCATCCCCTA	alt_5673_new	13	14	13	12	30	8	21	9	23	12
TGTGGTATCGTTGGAG	alt_5673_new	28	34	32	20	43	32	34	31	32	33
CTGAGCACTATAAACC	alt_5673_new	12	7	14	15	12	19	12	18	21	11
GATTGCAGAGATCGCG	alt_5673_new	14	11	17	12	22	12	21	17	19	12
AAGGTGTATTAGGGTG	alt_5673_new	12	5	10	14	12	12	19	4	13	12
CTCGTAATCATGATCT	alt_5673_new	52	63	57	56	76	56	64	56	77	50
ATAGTTTACAATACCC	alt_5673_new	60	56	101	61	53	59	64	49	56	46
CGGTATTATTTGGGTT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GTTTGTCAGTATCTAC	alt_5673_new	0	0	0	0	0	0	0	0	0	0
TCTTGTGTTCTGAGGC	alt_5673_new	36	51	32	31	29	40	36	29	36	30
AGCTTTATACTGCATC	alt_5673_new	9	13	13	13	18	13	16	17	19	8
TCGCCTAAGGCCAAGA	alt_5673_new	5	6	2	13	9	5	4	5	3	5
GTTATAGAGAGGGTTG	alt_5673_new	18	23	21	19	19	12	27	16	27	10
CGAGTGAACTGCCACT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
TATATGATCTCCAGTA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
CCAAGGTAGTTCATTT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
ATCCGTCTCTCTAGAA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
AATCCCGTCATTTATC	alt_5673_new	6	1	3	5	3	1	3	2	0	6
CTGGATTCCTCTAGTA	alt_5673_new	31	53	52	32	38	35	44	36	42	36
ACTTCGTATGACCGGA	alt_5673_new	109	78	142	81	89	83	99	58	96	94
CAACACTATCTTTGGC	alt_5673_new	19	21	28	15	18	15	24	17	26	23
ATGTCGCTGCGTGCTG	alt_5673_new	69	48	70	69	70	67	67	57	49	58
TCGAAATGTCAGAGGC	alt_5673_new	35	54	51	49	35	50	38	26	48	30
AGGTCACAGAGTTCAA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GTCAGCCTCCATGTAA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
TTGGAACGCGCTTCTA	alt_5673_new	65	71	87	65	66	81	64	44	82	72
ATTTAAGTGCTCTTAC	alt_5673_new	30	59	42	41	86	40	56	45	55	44
TGAAGATGGCGGTCAC	alt_5673_new	15	14	17	15	7	16	15	10	7	14
TGTGGCCCAATTTCGC	alt_5673_new	40	40	51	45	37	33	47	38	34	38
TGATGTCCGTGTCGGT	alt_5673_new	23	29	17	28	29	18	28	20	24	14
GTGCAATTACCTCTTG	alt_5673_new	8	16	15	22	15	11	24	10	14	8
AACCCACTTTAGTACA	alt_5673_new	36	41	68	54	41	45	50	43	58	32
CATATATCTCCGGTTA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
AGCACGCACCGGCTCT	alt_5673_new	0	3	1	2	4	5	3	1	1	0
CATCGTCGGGTTTTCG	alt_5673_new	216	223	236	233	235	212	235	215	235	201
CTTGTGTGTTTGAATG	alt_5673_new	7	11	4	15	17	2	13	10	8	16
GCATCGGTGCAGGTGT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
CTAGATCGCTTATTAT	alt_5673_new	151	187	198	164	160	148	188	184	193	152
CCTTTATGCAGAAAGG	alt_5673_new	8	9	10	7	3	5	7	3	7	6
CCTGTACGAATCATCT	alt_5673_new	52	40	68	52	50	47	63	48	56	45
TACGCCCCCCCCCGCT	alt_5673_new	86	85	135	113	84	95	87	87	109	85
TACGCCCCCCCCGCTG	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GTGGTGTCGAGTGGAA	alt_5673_new	29	41	50	27	46	24	41	33	39	28
GGCTGTTATTGTGAAT	alt_5673_new	21	31	23	30	31	22	29	35	31	15
CATTCCTCTTCAAAGT	alt_5673_new	67	62	66	59	49	44	62	72	50	41
TGCGGCCGCTTTATTT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
ATCCTGGTGTAGCACG	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GTTATCACTATGTAAG	alt_5673_new	37	32	43	31	49	25	38	27	42	32
CGTCGCTTATGTCCTG	alt_5673_new	29	9	19	21	23	24	20	27	28	14
GTCGCATTTCAGAACA	alt_5673_new	24	20	32	34	24	18	25	21	27	22
TAGTGCCATCGTATTA	alt_5673_new	77	114	93	103	129	85	126	78	118	70
AATTCGCTCAGACGAC	alt_5673_new	66	60	97	75	58	77	84	78	87	69
ACGTTGCCGATATACT	alt_5673_new	12	8	9	10	9	13	9	6	5	3
CTTCAAACCATGCCGT	alt_5673_new	64	97	60	68	103	57	88	74	92	44
TGCGCTAGGTTCTGTC	alt_5673_new	14	19	35	28	21	16	29	7	27	12
AGAATATTCCCCACTA	alt_5673_new	9	22	23	15	14	24	17	10	16	13
GGGTTACTTTCTGTAC	alt_5673_new	35	51	53	60	52	50	70	46	61	36
CCGATTCCCTATCGCG	alt_5673_new	4	33	9	4	24	1	31	7	28	3
GCACGGAACGACAATT	alt_5673_new	10	8	17	14	9	7	15	5	9	14
TCGTAGTCTGTTGCGT	alt_5673_new	19	33	20	30	38	20	35	18	45	14
CCGCGCTTATAACGGG	alt_5673_new	13	8	16	13	7	7	12	11	7	6
TCAGTGTTGTGGTCTA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
ACGTATACCAACAATT	alt_5673_new	69	91	111	102	94	77	103	64	108	69
AAACCGCAGTCGGGTC	alt_5673_new	24	23	19	25	18	8	23	12	18	18
GCCAGAGGAGGATTAG	alt_5673_new	10	10	26	4	17	12	14	11	24	8
CCTCCATCTTGTCGTG	alt_5673_new	10	15	21	13	11	11	14	6	10	15
GCAAGTGTCAGTTTTG	alt_5673_new	97	134	122	102	116	100	130	108	132	103
CCTCGCACCTGAGCCT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GATTTCGTGAGCCTTT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GCTAATAAGTAGGTCA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
TGGTCCGTACTTCCAG	alt_5673_new	81	93	99	85	86	73	118	78	85	85
CGCTTATCGGGTAGCT	alt_5673_new	77	65	82	76	50	60	66	69	64	66
CTCATATCTGTGTTAC	alt_5673_new	19	20	21	21	23	24	20	24	24	24
TTCATCCAGACTACCA	alt_5673_new	15	34	28	30	32	19	26	20	31	21
TATATTCGAGGCTGGG	alt_5673_new	0	0	0	0	0	0	0	0	0	0
CTCGTTGATTATTCCG	alt_5673_new	11	10	11	12	9	17	27	13	10	10
ACTTCCATTTACTTGC	alt_5673_new	42	39	45	46	50	50	37	54	59	32
TCCGGAAATGATCTTC	alt_5673_new	120	119	132	106	103	120	104	106	115	105
CCAGCCCTAATCAGCT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
ACTCAGGGTACATCGT	alt_5673_new	0	0	0	0	0	0	0	0	0	0
TTAGTTTAGTTGGTTT	alt_5673_new	127	118	134	142	135	131	134	111	137	102
TACCTCGCGATTTATT	alt_5673_new	13	18	17	15	18	9	17	13	17	15
TGGAGATGTATCTTTT	alt_5673_new	200	219	232	242	194	177	240	194	220	178
CTATCCCCTAATTCTG	alt_5673_new	0	0	0	0	0	0	0	0	0	0
GTTGAACATATCCATT	alt_5673_new	13	6	15	17	19	8	19	12	16	17
GGAACTTGTATTCTTA	alt_5673_new	12	20	17	9	13	21	17	22	6	16
TGTGACCATAATTGGG	alt_5673_new	39	47	39	33	53	29	55	29	53	35
CCTCGCTTGCTAAGAT	alt_5673_new	27	38	35	29	33	23	47	22	42	27
TGACATTCACGCCAGA	alt_5673_new	40	32	29	30	23	33	27	38	32	22
CTCTTTTATTTGGACT	alt_5673_new	6	9	1	8	11	10	5	2	9	3
GCGGCGTCCGAATTGC	alt_5673_new	29	42	39	45	43	28	29	40	50	34
CTTTCTGAAGATTGGC	alt_5673_new	16	21	17	13	21	20	21	13	37	27
AGATCCTTGGTTCTTA	alt_5673_new	0	0	0	0	0	0	0	0	0	0
AGGTCACCGGGGGAGA	alt_5673_new	9	8	3	8	13	4	6	8	20	3
AGCTCTGGAATTTTCT	alt_5673_new	49	55	59	59	45	57	52	49	40	41
CACGTGAGTGATTACG	ref_1411_missing	27	23	41	27	29	31	35	29	24	27
GGACCTGCATGCGAGG	ref_1411_missing	29	40	26	29	39	21	41	28	42	33
AAAACGTCAATGCCTT	ref_1411_missing	43	40	40	48	39	38	42	37	50	27
TCCTCTGTCGGTTGCA	ref_1411_missing	20	26	20	24	25	26	36	17	40	13
GTTGGATCTCTAATAT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
CCTCTATGGGCAGCGA	ref_1411_missing	21	25	21	17	31	14	32	16	36	29
CTCTATTCGACCTGAT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
CATGACATGTAACCTT	ref_1411_missing	36	60	57	64	65	42	61	43	56	22
AACACCTGATCACTAC	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
GGGCCCGGCCTCGAAT	ref_1411_missing	36	63	38	39	54	44	93	36	62	26
CTTCAACATTTCTCAC	ref_1411_missing	5	8	14	9	17	12	14	14	15	8
CCTCTGCCCATGGGCC	ref_1411_missing	35	53	43	25	38	30	43	31	58	40
GACGCTGACTACACCA	ref_1411_missing	29	43	38	43	55	34	45	19	49	21
TATCGTAAACCGTTGT	ref_1411_missing	16	21	21	17	18	19	14	14	14	9
TTTAACGGTACTTCGG	ref_1411_missing	23	29	26	26	32	16	27	24	25	22
TCTTTTTTGACGGTAT	ref_1411_missing	20	25	25	21	19	18	31	15	20	21
GTCCGGCACTTCCCGG	ref_1411_missing	4	3	6	3	4	0	3	1	2	1
GGCTTTACAGTGGTCC	ref_1411_missing	9	10	5	10	10	9	5	4	11	10
TACAGCCCTAGTATCC	ref_1411_missing	69	118	87	57	128	54	160	70	127	48
AGTCGAATCTTATGAA	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TATCTTAGTAAACCCT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
GGTCAGGAGCCATAGT	ref_1411_missing	2	5	3	5	5	6	10	1	7	3
CCTATGGATCTGCCAG	ref_1411_missing	8	16	16	13	31	6	19	11	10	11
CGACGCTTTGACTTGC	ref_1411_missing	34	43	34	18	35	28	26	27	48	38
TTTCTCGCTTCGTAAC	ref_1411_missing	0	0	1	0	0	0	0	0	1	0
AATGTTCGCTGCTTGC	ref_1411_missing	14	22	14	20	23	15	15	12	29	5
TTGCACAATTTGGCTG	ref_1411_missing	1	4	1	1	2	4	5	5	1	4
GATTTCTAGGCCGTGA	ref_1411_missing	24	22	27	13	19	16	25	19	31	12
GTTTTTTTCTGTAAGC	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
AAGTTCTCCTTACTTG	ref_1411_missing	38	49	35	43	41	28	34	28	44	30
TGAAGTGCCAAGACGC	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
GTGTGAGCATTATAGC	ref_1411_missing	0	5	1	2	2	1	1	1	1	1
TGTATCTCAAAGTTAG	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
GAAGGGTGTGGTTTTG	ref_1411_missing	15	12	9	10	15	21	23	17	21	11
GTATAGCATGGTTCAC	ref_1411_missing	12	24	25	12	24	23	21	14	31	18
TTTCCGCTTCACAGTG	ref_1411_missing	19	12	24	13	30	7	18	16	16	9
AGTTCCAGTCGAAAAC	ref_1411_missing	18	15	25	21	23	22	39	12	30	27
TAGCTTGTGTAGGAAG	ref_1411_missing	31	38	28	29	44	31	47	20	41	25
GGGTTAAGGCCGCGGG	ref_1411_missing	29	45	41	30	49	34	59	23	45	23
ACATCTAGGTTAGCAC	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
AGACAATCACAAGTTG	ref_1411_missing	36	44	65	42	55	40	48	37	48	43
AGCTATGTTCGTGTTT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TCAAATTGCCTGGGAT	ref_1411_missing	49	46	37	29	41	44	50	37	47	38
CTTTTTGCACTTTCTT	ref_1411_missing	6	9	9	9	16	8	8	10	14	5
CTTTAAACCGGATTTA	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TTAATGCATCTGTACC	ref_1411_missing	42	49	44	49	54	37	58	31	50	39
GTTGGCGTGAATGGGA	ref_1411_missing	6	6	9	12	7	8	10	5	16	6
ATGGCGTCCCTAGTTG	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TCCCATTGATTCTTCT	ref_1411_missing	2	3	1	2	5	0	9	1	6	1
CCGCGCAAATCTGTGA	ref_1411_missing	10	14	16	12	13	8	16	7	12	6
CCACGCTGTAAGTTTT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
CGTCACAGTGTAAGAT	ref_1411_missing	10	12	9	8	3	17	15	6	13	12
TGGTTGTCCGAGCCTT	ref_1411_missing	5	2	4	5	8	1	3	4	2	3
TGTAGGCGTTTCTCTT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TTCACCCTGTCAGATA	ref_1411_missing	10	12	6	10	15	12	13	8	12	8
CCGTGATTGACGGGAT	ref_1411_missing	8	8	7	10	9	7	6	4	11	4
CGCAACGTTCATCGTC	ref_1411_missing	62	54	46	53	67	47	48	59	49	48
GCCGTTATGTTGTGGC	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TGATGTCGCTTTGTTC	ref_1411_missing	15	24	23	19	31	19	28	32	32	28
GAGCAGGGATGCGGCA	ref_1411_missing	26	36	39	22	29	26	32	25	34	17
CGTGCTTGTACTTTCT	ref_1411_missing	10	20	21	21	17	14	25	31	37	26
CCCAGCCTCAATATCT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TTCCGGACATGAACTG	ref_1411_missing	16	22	20	14	32	17	26	26	22	13
GGACCGCACGATGTAC	ref_1411_missing	8	23	5	11	20	14	8	15	19	8
CCTGCTCTTTTTGAGG	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
TCGTCGCCCCGCCGCC	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
GCCGTATTTTATACGC	ref_1411_missing	22	35	22	26	20	15	23	23	26	17
TTGGCTATCTATATTG	ref_1411_missing	71	97	90	84	117	77	102	67	119	74
GGATTCTTGCCTCGGA	ref_1411_missing	41	56	44	42	37	35	48	41	54	34
ATACCGCTACCTGAAT	ref_1411_missing	10	14	13	22	20	6	18	9	20	8
AGTCGTTGTGCCATAG	ref_1411_missing	19	27	11	12	17	19	13	15	19	15
AGTCTAATTACATCTA	ref_1411_missing	6	3	5	8	9	3	6	0	5	7
TTGTGGAACACGAGTG	ref_1411_missing	27	29	27	32	35	13	29	13	39	13
TGCTCGAGTAGTCACT	ref_1411_missing	33	47	45	35	42	41	60	37	46	40
GGGATTATGCTATTTG	ref_1411_missing	33	49	48	36	41	24	50	46	44	37
TAGTAGCCTTCCCTTT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
GGTAAATATAACGTAA	ref_1411_missing	13	24	16	16	8	20	31	20	20	11
CGTTGTTATGACTCAT	ref_1411_missing	82	123	80	85	85	85	85	67	110	73
CAGATATTAGCTGTGT	ref_1411_missing	0	0	0	0	0	0	0	0	0	0
CTGGCCACGGCCGCCC	alt_5055_RC	35	45	69	53	52	59	63	43	48	36
TTCATTTGTTGATATG	alt_5055_RC	44	44	47	33	55	42	59	39	42	36
TCGCGACTCGACTTTT	alt_5055_RC	12	13	10	16	22	6	21	8	18	12
CCTAAGCTTAAATGGT	alt_5055_RC	2	0	2	6	2	0	0	1	2	2
AGTTATCTCAGTGTTA	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GGGTGACTGTGTAGTA	alt_5055_RC	12	16	25	12	20	17	23	15	27	13
GGTCTTCCTCGAAACT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GGTCCGGCTGTTTTAA	alt_5055_RC	24	29	26	11	27	16	34	24	33	12
ACTAAGTTTCAGAGAT	alt_5055_RC	28	30	28	36	36	27	32	23	29	27
GAATGTCTCGGCTTAG	alt_5055_RC	13	12	8	16	7	9	17	13	13	11
GAACCCATTGTGGCTC	alt_5055_RC	10	10	16	17	12	7	9	13	13	9
TATCTGTGAGGTCGGG	alt_5055_RC	127	110	175	130	100	112	107	114	124	120
AAAATCGGATCTCCAA	alt_5055_RC	41	45	45	28	47	42	47	51	36	40
AACATTTTTAATCCAG	alt_5055_RC	78	73	90	77	64	60	73	59	85	66
TAACGTTTGTTTAAGA	alt_5055_RC	32	16	30	33	18	32	34	16	27	36
CGCCCGGTTATATCGT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CATCTGCTCTGACCAA	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CCGATCCGGGTTGCGT	alt_5055_RC	50	52	60	54	39	37	46	44	45	31
ACTATAATCGCCAGTA	alt_5055_RC	3	2	5	3	1	5	4	3	2	1
GTGAAATGAGTCTCCT	alt_5055_RC	15	13	16	10	13	16	20	18	11	16
CTAGTATCCTTGCAGA	alt_5055_RC	45	61	63	54	63	49	70	53	83	54
AAGATGGATAGTAGTA	alt_5055_RC	38	40	47	41	36	51	52	49	48	48
TGCATGTTCGAGCGGC	alt_5055_RC	11	8	7	8	7	3	9	1	12	4
TCTAAGTCTACCCGCC	alt_5055_RC	5	8	13	5	9	12	5	3	6	3
AAATACCCTGGGGAAA	alt_5055_RC	6	6	10	4	5	4	9	9	4	8
TCATCGGAGGTAAGGC	alt_5055_RC	56	73	58	44	66	33	71	50	93	47
CAACACCGTGAGGGCT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CACAGCCGTGTCTGTG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
TCGCAATATTGCTCTA	alt_5055_RC	72	81	69	72	64	63	50	79	65	51
TCGAATTTTTAGAGCC	alt_5055_RC	80	90	91	66	65	74	80	43	81	74
ACATTGCCGTAGATAT	alt_5055_RC	81	87	79	97	81	93	90	77	77	89
GTTTCTAACATCCTAT	alt_5055_RC	124	110	174	128	132	98	122	113	119	132
TCAATTGGTTAAAGGA	alt_5055_RC	228	250	284	239	232	214	239	210	257	176
CATCAAAAAATTCATA	alt_5055_RC	9	14	9	6	10	11	9	20	11	15
AGCGTAAGCTCGGCGA	alt_5055_RC	91	66	73	61	59	63	56	69	62	54
TGAACCTCTATGTATC	alt_5055_RC	19	14	25	19	18	13	20	27	13	21
TAAATTCCCTGGCGCG	alt_5055_RC	17	14	17	14	16	17	9	14	3	7
CCCGATCGCAACCGCT	alt_5055_RC	16	22	23	23	31	16	33	18	30	16
CGTACGCGGCCTCCCA	alt_5055_RC	57	43	91	67	54	50	53	49	68	66
CAGATCCGGGTTCTCC	alt_5055_RC	2	12	5	3	10	5	6	3	10	5
CTCATTAGGAGCCTTG	alt_5055_RC	16	14	26	23	11	16	18	14	24	15
ATTCATAAATAATGTG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
ATATCCACTCTACCCA	alt_5055_RC	18	17	13	7	10	7	19	11	11	7
TCAGTTGTATCTTGGT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
ATGTGCTTATGATGTG	alt_5055_RC	59	49	75	46	46	49	45	50	59	33
TCTCTGCCACTAATTG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
ATACCCTCTAGCATAC	alt_5055_RC	11	20	26	24	24	19	34	24	23	27
CTGATTTGCGACGGTA	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
AATATCTTCGTATAGC	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
TGTCTAGCGCAAATAG	alt_5055_RC	11	13	21	16	19	15	15	16	8	27
TAGTGGTAAATTGAGT	alt_5055_RC	8	8	11	12	7	10	10	12	13	6
CTCAGCCTCCGCCCGT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CTGTACTTTCTACAGT	alt_5055_RC	12	19	17	5	17	4	10	13	11	13
TTGTATTCATAGTTTG	alt_5055_RC	37	23	37	32	42	31	25	25	27	32
CGCAGCAACCTTTCTT	alt_5055_RC	27	58	37	42	58	32	71	25	59	39
CAGGGTTCTCGGATGG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
ATAATTCCCATTAGTA	alt_5055_RC	19	26	22	18	23	17	24	23	22	18
TGTTACTTTGAGTAGC	alt_5055_RC	46	50	56	54	46	43	48	53	56	50
CTTCCTGCAAGCCATC	alt_5055_RC	7	1	8	13	15	13	7	10	10	7
ACTTATTATACTAGCG	alt_5055_RC	36	46	46	28	46	37	29	39	34	34
ACCGGTGCCTAATCTT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GCTTCGTTTTAGATCC	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CGAATTTCGCGCTTTC	alt_5055_RC	6	3	5	6	9	6	1	3	5	5
ATTGAATTGGCTACGT	alt_5055_RC	69	55	101	74	54	72	62	56	67	59
CCGCTCATAAGTCCCG	alt_5055_RC	22	12	22	14	16	23	23	14	14	9
CGGTCTTTAGTACACA	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTCAAAAGATTG	alt_5055_RC	39	39	42	39	40	25	24	35	38	36
CACAAGTTATATCAGA	alt_5055_RC	16	8	8	6	10	8	12	4	9	4
TTCCGGGTGTTTCAAG	alt_5055_RC	62	62	68	56	66	67	56	56	82	50
GGCGGCGAGCACCGTG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GTTCCATTAGTCTAGA	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
ATGACCCCGCTACGTT	alt_5055_RC	72	71	85	73	66	62	66	65	85	65
AATGCGGCCTCCCCTT	alt_5055_RC	6	3	11	6	6	6	3	7	5	8
AACCGATGTTTCACGC	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
TCTGTTCTTAGCCTCA	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GCTGTCAGAGGTCGTT	alt_5055_RC	15	10	24	21	13	22	24	13	27	15
CACGTAGCCCCTCCCA	alt_5055_RC	34	49	45	43	60	36	47	37	50	36
CTCTGTTTTCTTATTC	alt_5055_RC	37	33	45	43	35	37	34	34	44	31
ATCTGCGGGCTGGAAG	alt_5055_RC	13	12	17	14	10	15	13	10	20	9
ATCCTCCTCGTAATGT	alt_5055_RC	27	17	17	18	23	14	11	15	28	16
GGCTGTGCTTTAACGC	alt_5055_RC	3	1	2	5	5	2	3	2	3	2
TGTCCTCGTCGATTGC	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GGCGCTTTACGTTTCC	alt_5055_RC	21	47	40	37	42	26	34	24	36	27
TCTCTGCCCTTAGTAG	alt_5055_RC	47	38	63	44	38	35	46	44	61	33
TTTTACCGACGACTGC	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CGGCAATGCTTTATAT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
ATTGGCACAACTGTTG	alt_5055_RC	54	65	79	91	84	58	69	62	77	61
TGAAGGGTCCTTGAAG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
TACGGTTTTGCCTCGC	alt_5055_RC	10	12	18	19	17	11	10	11	12	8
GATTGTCCCCGACCGC	alt_5055_RC	2	3	0	4	1	2	3	1	2	3
TGCATTTTTCCTCATT	alt_5055_RC	20	23	35	23	31	37	14	32	32	33
GGCCAGGTGAAAACCC	alt_5055_RC	58	53	49	48	47	23	33	31	44	38
TTCTGATTGTTCCACC	alt_5055_RC	62	59	70	75	70	55	64	68	73	60
ATCGAGGTTTGTAGAG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CTCCACGGAGGGTCTA	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CTGACCATGATCCTAC	alt_5055_RC	40	58	62	50	41	45	46	46	66	42
TATCCGCAACACAAAT	alt_5055_RC	117	140	139	143	111	125	118	118	113	124
GGGAGCGGAGTTGGTA	alt_5055_RC	14	18	13	5	19	19	16	17	20	11
TGTTCCGATGCATCGT	alt_5055_RC	48	47	65	47	49	52	58	59	51	52
CACTTACAGTGTCGTC	alt_5055_RC	24	17	30	22	27	27	21	13	20	14
TATCCAGAGATACGCG	alt_5055_RC	80	90	109	72	85	84	85	63	66	61
TGAAATGTCACGGCCC	alt_5055_RC	19	19	25	15	21	11	17	17	20	14
TCATAGGGTTTGCTGT	alt_5055_RC	30	31	45	20	37	27	24	18	32	23
TGCTCAAGCAGTCATG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GTATCGAACTTGCAAT	alt_5055_RC	24	24	22	29	27	26	28	25	39	33
AGCTCACTGCTTATGT	alt_5055_RC	89	118	106	88	102	95	108	68	122	78
GGATCTCCCTATGGTT	alt_5055_RC	32	31	59	41	40	39	53	36	38	29
GCTATCTCCTTTTTAA	alt_5055_RC	113	98	142	105	114	118	113	105	142	130
GAAATTTCGAATAGCG	alt_5055_RC	63	61	67	68	63	69	64	49	78	49
GTCAGAATGAGCCTGT	alt_5055_RC	75	117	100	85	84	63	97	78	104	77
TTGGATTCAGTTTAAA	alt_5055_RC	27	44	39	37	58	33	39	23	31	29
CTGCCTACCCATCAGG	alt_5055_RC	28	36	24	18	25	23	26	8	34	20
TTTTTTTCTGTAGCGA	alt_5055_RC	108	82	101	119	86	95	95	88	114	105
TCTTTGTGTTTGCGTC	alt_5055_RC	68	34	58	59	42	58	37	41	47	31
AACGTAATTCACCGGT	alt_5055_RC	8	8	8	3	7	2	5	2	5	2
TAGGATTACGCGGGTT	alt_5055_RC	0	0	0	0	0	0	0	1	0	1
CACTTGGACGGGAATT	alt_5055_RC	5	11	3	10	10	10	7	5	12	4
TCTGGGCTAAGTTTTC	alt_5055_RC	3	5	2	6	4	4	3	3	5	1
CCACTAGCGGCGAAGC	alt_5055_RC	6	3	5	5	4	6	4	3	0	3
GGGATTCTGGTGTGCT	alt_5055_RC	35	54	52	39	44	35	32	41	54	31
GGCTTCGTATAGCATT	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
GCGTTCGCAATATTCG	alt_5055_RC	0	0	0	0	0	0	0	0	0	0
CAAACTACTGTCAGTA	alt_5055_RC	16	12	19	9	8	15	15	10	13	8
AAGTATGCCATCTTTC	alt_5055_RC	32	43	36	32	35	31	24	31	41	27
AAAATGTGGGACGAGG	alt_5055_RC	46	43	54	48	56	58	51	59	59	42
GTGCTCTATCTATATG	alt_5055_RC	1	8	4	1	3	2	1	2	3	3
GATCCGTAGTTTGTTC	alt_5055_RC	27	19	19	21	17	25	18	12	17	24
TCGAACCCGTTCATTT	alt_5055_RC	67	84	77	68	73	78	87	48	81	48
GTTCATATCTCGTGCG	alt_5055_RC	42	25	45	32	41	44	45	26	46	31
CATATTGGAGGGACAC	alt_5055_RC	139	155	207	182	145	141	139	159	189	139
CTAGTTACTCATGGAC	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
GATATTTACTAAACCC	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTACCATTTCTCA	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGAGCGACACCGC	alt_4201_reverse	2	6	5	4	6	5	10	7	12	6
AGGGGGCCTTGTATTA	alt_4201_reverse	11	20	12	14	17	14	21	9	29	8
ACAATGTTATAGTTTT	alt_4201_reverse	3	11	9	6	13	12	11	7	9	3
TCCGCTCCGAGAAATT	alt_4201_reverse	17	29	14	29	27	18	32	25	29	23
CCTCCGGAGCGATCGC	alt_4201_reverse	9	24	15	14	25	15	26	10	28	7
CTGTGGTTATTCTCGT	alt_4201_reverse	16	30	24	13	30	20	24	16	21	21
TCGCGTGTCGCACACT	alt_4201_reverse	64	112	107	95	118	57	115	68	103	81
CAGTTATGCCTTTCGT	alt_4201_reverse	3	4	1	5	5	5	7	3	2	0
CTGAACGGTAGTAATA	alt_4201_reverse	84	80	66	52	70	57	92	48	87	77
TGTATTCACTATGTCC	alt_4201_reverse	37	59	51	42	59	44	67	32	67	37
TCCTAGTCCTTGCCTT	alt_4201_reverse	9	12	10	6	17	15	19	7	14	7
GAGAAGATCCGCGCAG	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
AGCACGTGATATACAA	alt_4201_reverse	8	12	3	9	17	9	18	9	15	6
TGTAGCCACTCCTAGC	alt_4201_reverse	3	10	2	5	11	4	15	3	10	4
TCATCGAATGTTTTTT	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGTGATACCTATT	alt_4201_reverse	20	39	27	25	46	20	47	11	51	24
CCGTATTCTGTCTCTA	alt_4201_reverse	8	35	6	4	36	5	34	9	36	9
TATTTGGGGACATTTC	alt_4201_reverse	24	42	39	27	54	39	54	34	57	28
GATCTACCTCTAGATT	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCTTGATTGGACT	alt_4201_reverse	29	41	31	25	29	25	39	23	60	28
GCTCTTCAATACTCCC	alt_4201_reverse	10	44	16	22	48	15	42	12	47	21
GTTTGGACTCTGGTAG	alt_4201_reverse	15	22	7	7	21	15	22	10	17	11
TTTCCAGAACATCAGC	alt_4201_reverse	330	567	403	371	550	311	643	344	636	299
ACAACATGATCGGTAA	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
GTGAATTGTACTAGCA	alt_4201_reverse	37	68	40	43	63	40	84	33	76	29
CACGTTTTACTCGATT	alt_4201_reverse	45	49	44	39	51	33	59	42	60	44
TCCCATCATCCTTGCT	alt_4201_reverse	21	37	30	27	44	18	41	13	37	23
ATGATGAACTTGTGTA	alt_4201_reverse	1	2	5	2	4	0	6	2	5	5
ACAGACTCCCCCGATT	alt_4201_reverse	34	72	58	44	105	38	92	28	105	31
CATCCTGTGGTGTTGG	alt_4201_reverse	1	1	1	1	5	1	0	1	6	0
GGTGCGGTTGTGGGAC	alt_4201_reverse	16	33	20	19	41	17	33	26	40	16
GGATAAAGGGAAATTT	alt_4201_reverse	39	47	42	26	43	49	73	31	45	42
TCATTGGCCGCTGGTT	alt_4201_reverse	26	35	30	31	38	23	41	29	63	23
ACACCATGGAGCGGAC	alt_4201_reverse	19	33	24	11	27	17	28	26	33	18
AGGTTACATCAATCAG	alt_4201_reverse	30	43	50	39	29	22	39	37	42	23
TCCATCTGCGTCGTTT	alt_4201_reverse	42	46	36	44	35	38	58	24	62	32
GGTAAGAACAGTGAAG	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
TCACCTTTAGTCCTCG	alt_4201_reverse	13	40	32	17	37	21	46	24	48	9
ATGAATGGTAGCTCGG	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
GAGAACCGATAATATT	alt_4201_reverse	254	357	326	244	397	267	424	249	448	249
GCTGGCGACCAGATGA	alt_4201_reverse	37	29	51	33	47	31	51	36	56	25
CTACGTCTGCTTGTTG	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
TATAGGCCAATTGGTG	alt_4201_reverse	2	1	5	1	9	1	8	1	0	1
GTCCATCGGTCATGTT	alt_4201_reverse	19	37	22	27	43	30	62	26	34	24
GTCGTCGCTCGTGCTG	alt_4201_reverse	36	76	44	54	70	45	72	29	74	34
ATATCTCACCAACCCA	alt_4201_reverse	24	24	30	11	45	26	42	34	40	28
TTGTGGGTGTCATCAT	alt_4201_reverse	18	34	18	18	40	18	24	13	39	16
TTGGTCTAATGTATTA	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCTATCGCTGCCT	alt_4201_reverse	13	37	27	26	30	14	26	17	38	12
ATAATTCACTGTTTAC	alt_4201_reverse	37	49	39	25	47	21	35	31	42	16
TATAAGTTGCAACGTA	alt_4201_reverse	18	41	21	16	37	20	54	14	37	20
AAGGGCTCGTCCAGCC	alt_4201_reverse	63	80	80	78	91	70	126	62	85	61
GGGACATGATTGGAAG	alt_4201_reverse	11	12	11	13	16	7	24	7	17	14
GAATCCGCCCGCGCTG	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
ATATCTTGTACATTTA	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
GCAGTTTAGTAAAGCG	alt_4201_reverse	1	0	2	0	0	2	1	2	1	0
TGGGCCGGCTTATAAA	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
CACCTGTTTGCTTATG	alt_4201_reverse	0	0	0	0	0	0	0	0	0	0
TTAACCTTATTTGGGA	alt_1522_reverse	8	4	14	9	5	9	5	8	6	7
ATAAGTTTCCTCCTTT	alt_1522_reverse	5	2	8	12	6	6	5	7	4	11
TCATGGTCTCTGTAGA	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
AGTTAAGCTAAAGTTG	alt_1522_reverse	245	158	282	262	147	221	156	219	171	222
GTTATCTTAGCGTTAG	alt_1522_reverse	192	133	250	246	109	174	154	216	156	196
TTCTACATGCAAAGGA	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
TAAACCTTTCTTTCCA	alt_1522_reverse	90	56	126	120	68	95	58	86	56	96
GAATATCTACTCGGTT	alt_1522_reverse	23	21	24	29	15	24	16	18	28	14
GGCAGACGCTCGGTTT	alt_1522_reverse	41	19	37	45	25	29	29	37	17	28
GCGGCCTCGTTTTTAA	alt_1522_reverse	178	105	221	172	120	167	139	191	143	154
GTCGTTGAAGTACGGC	alt_1522_reverse	72	58	93	97	68	86	55	76	64	81
ATCCTAGCGCACCTGG	alt_1522_reverse	46	39	76	50	41	53	49	49	48	47
TGGACTCTTGCGAAAC	alt_1522_reverse	11	10	11	10	12	11	16	15	6	8
ATTACTGACGATTCAC	alt_1522_reverse	9	5	11	5	3	4	4	5	6	13
GGTATAAACGCCCTAT	alt_1522_reverse	53	49	94	74	42	55	38	68	50	59
ATCGTCGGAATTTGCG	alt_1522_reverse	171	101	199	185	107	212	108	183	126	150
AGCCTTTCCGTTCTCA	alt_1522_reverse	149	137	184	181	137	155	122	182	141	134
TTGCTGGCAACGCGGT	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
ACATTTGGTGACTTGC	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
ATGATATCGCTATCAC	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTTGCCGAACTTT	alt_1522_reverse	57	37	83	42	41	51	48	66	56	44
TACCTAATTTGTGTGA	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
CACTACAACACTGCCG	alt_1522_reverse	67	81	97	100	74	60	65	63	78	52
GCTGGGGAAAATATTC	alt_1522_reverse	31	20	40	25	11	37	18	37	22	23
TAGGAAATTTAGGCAT	alt_1522_reverse	63	26	66	53	35	56	29	43	22	48
ATATACTTCTTGAATG	alt_1522_reverse	60	49	79	73	44	58	49	73	56	73
ACGAGACTCGGATATT	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
TATGTTGTCTTAATAC	alt_1522_reverse	15	8	15	18	10	17	17	13	7	12
TAACCTTCGGTCACAG	alt_1522_reverse	48	37	64	48	22	60	23	34	29	34
ATGCCGCAATTCACAC	alt_1522_reverse	141	125	165	188	94	153	102	135	91	133
TCTAAAAACGATATAG	alt_1522_reverse	100	59	87	87	60	91	71	80	66	67
ATCGGATTATAAGTTT	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGTTATGGGGCTC	alt_1522_reverse	6	2	9	6	2	4	5	2	5	8
TCCGCGGTTACGTTCG	alt_1522_reverse	29	27	43	26	21	40	24	19	18	22
TATCCGTAATTTAATT	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCTCTACAGTTCG	alt_1522_reverse	14	15	26	10	15	15	8	13	10	9
TTTGCGCATCCATTGC	alt_1522_reverse	9	8	19	7	6	8	10	7	8	8
GCTAGTCTAGAACAGT	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGCCTCCAACAGG	alt_1522_reverse	5	1	10	6	2	5	1	3	1	5
GTTCTGCTTGATTGTG	alt_1522_reverse	21	16	20	25	12	23	17	25	20	31
GCAGATACGTGAAATT	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCTCCTGTTGCTG	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCTTCAGTTAGGG	alt_1522_reverse	6	9	6	6	3	7	2	8	6	4
GCTAGTCAGAGCATCT	alt_1522_reverse	46	47	44	35	38	50	33	40	32	32
AAAGGTTAGTGCCACG	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
TTCGAACTCATCCACA	alt_1522_reverse	86	52	76	81	51	64	44	64	52	62
GCGCAGATTCGTCTGG	alt_1522_reverse	14	3	17	12	6	12	12	14	6	5
CGTAACGGAATATATC	alt_1522_reverse	38	32	46	54	27	32	36	34	39	38
CTGATCATTCATCTTA	alt_1522_reverse	26	17	35	26	20	22	17	19	14	31
CAGTTGTAAGCTTTGA	alt_1522_reverse	23	13	28	14	13	15	16	22	10	17
TCAAACACCGAAGTAA	alt_1522_reverse	59	28	45	45	33	45	31	34	36	41
CGTCTCGCATGAAGGT	alt_1522_reverse	49	25	77	55	33	44	34	35	41	42
GGCTGTTTTCTTCCTT	alt_1522_reverse	181	92	175	176	89	161	106	159	119	173
ATGGGATACTCGTGCT	alt_1522_reverse	12	21	23	13	8	16	12	18	16	17
CCGTAGATGCTACGCA	alt_1522_reverse	41	41	64	72	37	39	60	51	48	44
TTTGTCGTGTAGCTTC	alt_1522_reverse	205	131	265	216	133	196	128	176	140	150
ATAGATCTGGTCCAAA	alt_1522_reverse	6	0	3	3	7	4	8	4	1	2
ATATTAAACTTTCTAT	alt_1522_reverse	243	151	304	254	142	222	145	268	126	242
ATCTACGGCTTTCTAT	alt_1522_reverse	6	7	8	9	8	7	10	7	12	10
TGGTATTGCCCTTAGG	alt_1522_reverse	168	109	160	185	99	150	100	149	114	133
TCGTCTTCCCATGGGA	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGTCAAATACGCT	alt_1522_reverse	26	23	21	24	13	15	24	28	17	21
ACATCGCTCGTGGATC	alt_1522_reverse	44	28	57	39	29	43	28	49	30	52
CATGCTCGAACCAGAT	alt_1522_reverse	12	11	23	28	20	23	18	17	17	19
AGTTAAGCTAAAGTAG	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCAGTCAGTATTT	alt_1522_reverse	11	4	15	12	12	8	8	8	8	11
TCGTCTTTGATTAGGT	alt_1522_reverse	6	3	20	10	5	10	13	4	3	3
ACCCTCGACCTGCACT	alt_1522_reverse	18	24	30	33	20	23	28	26	28	19
CGACTGTGGTTTTCGA	alt_1522_reverse	80	49	99	97	65	101	64	77	50	95
ATGAGCGCGTCGGAAT	alt_1522_reverse	32	37	43	32	18	35	27	43	27	23
ACGCGACGTCATCATC	alt_1522_reverse	0	0	0	0	0	0	0	0	0	0
TCGAGTTTTTGCTAGC	alt_1522_reverse	15	15	21	14	8	17	11	15	9	11
ATAAAGTGATTTTCCT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTTCTAGGGATCC	alt_4832_upstream	213	253	272	234	263	201	297	188	286	189
CACGCTACCTAGCTGG	alt_4832_upstream	8	17	11	16	21	12	9	10	22	5
ATTTTCAGTTAAACCC	alt_4832_upstream	47	56	54	46	57	39	48	45	50	41
ATATCGGACAAGATCG	alt_4832_upstream	8	7	7	8	5	4	6	8	1	5
ATCCGTGAACTAGAGG	alt_4832_upstream	31	54	52	47	47	33	58	35	49	37
CCGTAGATCTAGTTGA	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CCGTATGATAAACATC	alt_4832_upstream	16	42	26	18	46	13	33	13	50	15
GCTGTATATGTTGTGG	alt_4832_upstream	9	9	8	7	7	12	13	9	12	8
TTATTGATGGACTTAG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCGCTTGCCTTTA	alt_4832_upstream	31	58	42	34	48	43	44	25	59	32
TATTTGTACTATAGAG	alt_4832_upstream	18	12	19	11	13	9	11	10	10	12
TTAGTTTAACCACACG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCTGCGTTTATGG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTTCATCGGCTTT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGGTCGCTAAATG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TACACCACAACCCCTG	alt_4832_upstream	19	54	29	31	53	35	52	33	47	39
GGGTGACCGACTCATT	alt_4832_upstream	16	6	14	9	10	10	8	8	17	7
ATTTGTTCAAGGTTAG	alt_4832_upstream	10	4	11	7	9	1	11	3	6	3
TCCATTTTCCGATAGA	alt_4832_upstream	18	21	19	20	21	25	26	13	27	18
CTGCGAGGCCGTTTCC	alt_4832_upstream	0	0	11	3	1	5	1	5	3	1
CGGATAAGCGACTAAT	alt_4832_upstream	12	13	6	3	11	11	14	8	10	6
GTCGCATGGATGCCCC	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTCTAAACCGTCA	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GGGACTCTCACGCCAT	alt_4832_upstream	51	37	52	43	35	31	42	41	49	37
CAATAGTGTGAATTGC	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CCGGGTTTCTATCAGT	alt_4832_upstream	272	340	321	288	361	285	385	244	371	233
AAGCAAATTTGCGATG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
AGAGTATGCAGGATAG	alt_4832_upstream	66	67	67	55	74	54	99	52	74	43
GTTCGTTGTCATTTAC	alt_4832_upstream	53	57	55	49	76	30	58	56	74	42
GGTTCCTGCTTACATG	alt_4832_upstream	15	28	30	21	23	18	20	15	17	21
ATTTTGAGGGGTTCTC	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GCTACCGATCTATGTC	alt_4832_upstream	27	49	34	37	65	28	58	41	42	22
CGAAATCTGGCACCGA	alt_4832_upstream	45	57	54	54	51	61	71	63	74	46
TCAGTACTAGGTGCCG	alt_4832_upstream	124	143	110	94	180	85	127	84	146	106
CAAGTGTTAATTATGG	alt_4832_upstream	12	37	26	14	36	16	32	36	30	20
TTTAAATTTCCTCTCG	alt_4832_upstream	44	59	49	48	65	42	44	33	69	44
ATGGTTGTGCAACATG	alt_4832_upstream	4	15	9	6	18	13	14	8	24	5
CCCTTTCGGCCTAAAC	alt_4832_upstream	21	67	42	24	49	23	53	28	60	26
TGTGTTCCCTAATACC	alt_4832_upstream	42	38	58	41	60	34	57	41	52	34
AGGACCGTTCGATGGA	alt_4832_upstream	67	74	97	72	71	75	93	79	84	48
TTCGGGGCCCATAATT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GTGCACTTGAGTTATC	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GAAAGGCTGCGATAAT	alt_4832_upstream	25	32	37	29	23	21	26	21	27	23
GCGTTTCTGTTCGTGA	alt_4832_upstream	22	15	22	15	18	16	13	16	12	10
CATGCTCGAGTCTTGG	alt_4832_upstream	57	48	45	50	54	30	79	41	51	43
TATGGACGCTCTTAGA	alt_4832_upstream	127	149	157	137	129	94	165	140	150	115
TACCAACGGTCTCCGG	alt_4832_upstream	7	9	6	9	18	5	20	5	11	4
TCCCGCTGTTATCTTG	alt_4832_upstream	37	34	40	35	31	32	22	43	41	29
GTAGTTCTAAGGCTCA	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTTTTATTCCGCT	alt_4832_upstream	34	56	51	37	36	31	34	37	48	31
GGGCTGTAAGATCTAG	alt_4832_upstream	23	38	30	26	24	17	20	24	32	23
TACATGTTTTTAGCTT	alt_4832_upstream	23	21	24	22	35	18	36	24	27	30
GTGGGGAGGGTGTTCC	alt_4832_upstream	2	4	6	7	3	3	5	1	8	4
ACTCATCCGGCGCAAT	alt_4832_upstream	14	20	12	11	15	8	19	18	31	8
TGCAAAACATGCTCCT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GCATTCACCTCCATAC	alt_4832_upstream	12	14	14	16	15	5	16	15	20	3
CTGTCACTCATCTAGG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CACCTTCGCGTTTTTC	alt_4832_upstream	66	71	94	89	64	79	77	69	91	58
GTAATTATGTACCCAA	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GGTGACTCCTGCCCTT	alt_4832_upstream	48	31	56	58	35	48	51	31	50	42
GGTATGTATGTTCTAA	alt_4832_upstream	6	3	14	2	2	10	6	5	6	8
ACTAACTTGCTGTATA	alt_4832_upstream	107	121	152	118	121	82	122	102	120	81
CTTACGTGTACTAGAT	alt_4832_upstream	10	12	8	8	24	13	28	8	17	14
TTAACATCTATATGGT	alt_4832_upstream	26	40	36	40	43	28	57	31	51	25
TCAGGTTGCTTTTTCC	alt_4832_upstream	8	7	9	5	9	11	6	11	8	9
TATGTCTACTGACACA	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TGGCTTTTAAATCATG	alt_4832_upstream	38	26	26	38	27	18	31	28	21	28
TATTGATGTACGCCGT	alt_4832_upstream	60	51	66	54	49	67	70	37	81	54
AATTAGACCACTGTCG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATACTCCTTACGGGTC	alt_4832_upstream	14	13	8	8	19	10	17	11	13	12
GTATCTTTTTGTTTGT	alt_4832_upstream	118	129	119	130	116	104	108	116	130	137
TGGCCCATATAGTCCG	alt_4832_upstream	59	66	90	57	49	54	63	54	57	52
ATTTGCAATTGTTTTG	alt_4832_upstream	18	24	22	24	28	21	24	13	24	21
GTGTTCTGTCTTACTC	alt_4832_upstream	56	50	52	43	41	54	49	48	52	49
TTTTCGTTCGTTCAGT	alt_4832_upstream	10	12	15	13	12	9	11	11	14	10
ACGTCCGACTTTTGAG	alt_4832_upstream	87	99	86	87	108	78	98	92	83	91
GTGAACCACTTAGGGT	alt_4832_upstream	11	14	11	9	11	14	18	11	20	20
GATTATGGCTGCCCGT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TTGTATGCTTTCTGAT	alt_4832_upstream	26	26	21	22	36	11	20	30	31	25
AGCTTGGTTGCTTAAT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TGGGATCTAGTATGAG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TACACCGCTGCAGCTC	alt_4832_upstream	82	83	58	72	89	58	105	60	113	46
AGCTTCGGTGTGTTAG	alt_4832_upstream	11	21	17	11	18	8	28	5	16	21
CTGTCCCTGAGGGCGG	alt_4832_upstream	46	47	46	40	41	39	33	28	54	36
CTAGGTGGGTACCCCT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GTAGAGACCGGCCCCG	alt_4832_upstream	33	49	40	43	60	32	46	34	39	41
GACCAGTCGAGAATGT	alt_4832_upstream	46	74	48	58	71	48	81	50	89	42
TGGTCATTACTTTTGG	alt_4832_upstream	26	37	51	32	49	34	42	22	45	45
GTCGCTTTTCTACCTT	alt_4832_upstream	39	60	44	45	48	31	53	44	73	38
ATCCGACTCAAATATG	alt_4832_upstream	63	80	65	60	90	75	77	37	85	61
GTTCCGATCGTATCAG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCTTCTGATACGG	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TCGTAACAATGGGCAG	alt_4832_upstream	20	37	28	26	25	16	15	17	28	21
TGGGTAGTCCGTCAGG	alt_4832_upstream	14	22	26	16	22	25	23	15	27	19
TGAGCAGGGGAGTCAC	alt_4832_upstream	8	8	11	3	2	5	6	9	7	7
AGGGCCCTTTCGCAGT	alt_4832_upstream	18	16	17	29	22	16	28	16	19	21
ATATTTCGCCGTCTGC	alt_4832_upstream	26	25	27	22	36	19	34	19	35	16
TTGATTCTACTTCGAA	alt_4832_upstream	14	11	24	25	9	16	27	11	27	22
ATAAGCTAAAAACGCT	alt_4832_upstream	26	47	28	26	34	22	33	36	57	15
TCACTCGTCCGCAAAT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
TATCACGTCGCTTTCA	alt_4832_upstream	26	26	25	20	16	17	15	20	32	14
AATGGTTGCTACAGGT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGATGGTTGAGTT	alt_4832_upstream	7	8	15	18	12	7	11	9	6	3
CTTTGACCGGATTGTT	alt_4832_upstream	56	60	59	44	69	40	61	46	65	48
ATCTGCTTCCTTAGAC	alt_4832_upstream	33	52	46	34	49	33	47	25	55	27
TCCTTTGCTTGCTCCT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGGTGCTAAGTTT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
ATTCACCTAAGAAGTT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGCACGTATCACC	alt_4832_upstream	1	2	7	5	8	5	1	9	1	5
TTTAGACGTTACTCAG	alt_4832_upstream	36	59	42	29	64	27	63	23	88	27
GTCGCATGGATGACCC	alt_4832_upstream	92	97	87	67	71	79	98	86	95	63
TTGGTGTGGGAAGTAT	alt_4832_upstream	20	15	29	11	22	18	27	22	24	22
TAAGACTGTTTTGCCT	alt_4832_upstream	13	16	9	16	13	9	14	9	7	9
TACGTTGGCAAACGCA	alt_4832_upstream	9	7	4	8	3	2	10	4	6	5
CTGGTTACTCGATGGA	alt_4832_upstream	11	11	14	5	20	14	18	10	13	17
GACGATTCTTCATGTT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CGGAATATCCGTTTCC	alt_4832_upstream	227	245	244	218	218	193	247	196	253	190
CCGGTCTACATTTTCT	alt_4832_upstream	4	7	2	1	18	2	9	1	6	2
TGCCGTGTGATTGTCC	alt_4832_upstream	38	71	45	47	74	28	63	26	74	29
ATCATGGTATAAATTA	alt_4832_upstream	223	221	254	179	220	181	206	186	213	177
TTTACATCACGGTTTT	alt_4832_upstream	28	24	15	14	17	15	27	10	36	20
TACTCTGCTACTTGAA	alt_4832_upstream	22	26	35	31	28	33	32	29	30	25
GCCGAGTGTGAGTATG	alt_4832_upstream	2	6	6	3	1	2	2	1	1	4
GCTTATCGTTATAGTA	alt_4832_upstream	20	16	36	26	20	19	19	19	21	15
TTATGTTTCGCGTTAG	alt_4832_upstream	50	68	57	32	50	38	58	40	70	53
TGTCTAGTTTGTCAAT	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CGAAGTTTTTCAGCGT	alt_4832_upstream	26	28	30	28	27	13	32	22	54	18
ACCTCTCGTAGGTTTT	alt_4832_upstream	51	51	55	44	49	45	51	50	47	32
CGTCAATGAAGGCCAA	alt_4832_upstream	0	0	0	0	0	0	0	0	0	0
CAACAATAGAACGGTT	alt_4832_upstream	180	216	192	169	179	179	213	155	241	153
TCCACAGAATGGGTTG	alt_3685_fdr	6	21	8	9	13	4	14	3	14	5
CTCTTATTTCGTCGTT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATAGCCTACAAT	alt_3685_fdr	16	27	21	14	37	12	39	12	32	20
TCGTCTACCTTAGGTA	alt_3685_fdr	2	9	10	6	12	8	13	7	15	2
CTCTGGTTATATCTCA	alt_3685_fdr	9	11	13	2	21	6	21	5	16	4
ATTGAGGGATAGAATA	alt_3685_fdr	8	28	8	9	22	6	13	7	14	3
TCCTCATCGGCTACAA	alt_3685_fdr	37	56	37	40	76	35	58	35	61	32
CTTCGCGGCTGCCCGT	alt_3685_fdr	29	52	23	31	44	25	55	16	58	22
CGCGGGCTTGTAATTT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TCATCGTGCGATCTCA	ref_3685_fdr	5	10	11	9	17	7	18	10	16	4
TGAGCAGATTGTCTAT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TTATGCTCACGTGCGG	alt_3685_fdr	1	4	1	2	6	2	11	2	5	1
TTCGATTGCACGGGTT	alt_3685_fdr	115	257	104	113	262	100	279	96	307	91
CTCGGCCCGAACCCAT	alt_3685_fdr	21	51	20	31	46	24	43	19	59	16
GGACAGACTGACGAAC	alt_3685_fdr	7	12	8	2	12	4	16	6	21	3
TAACAGGGGTTTTACT	alt_3685_fdr	31	51	33	38	40	45	74	31	63	26
CCATCACCGATTCGTG	alt_3685_fdr	1	5	6	1	4	2	10	4	9	2
AGGGGGCCGCGGTTTG	alt_3685_fdr	27	60	31	28	74	37	61	26	72	29
GTCTGCATGGGCTACA	alt_3685_fdr	2	9	5	2	4	0	8	0	6	0
ATCCTCTATATAGGCT	alt_3685_fdr	36	58	35	28	69	38	70	38	66	37
CGGGTATTATTACGAT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
CACATCAGTGCCGTTA	alt_3685_fdr	39	63	36	29	66	26	54	31	96	23
TGAGAGGGGTCATAAT	alt_3685_fdr	3	16	3	4	3	4	6	1	4	2
TGACGCGGCCGTGCAC	alt_3685_fdr	60	390	74	59	381	51	384	75	421	61
CGGTTTTGATGTGAAT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TGATTTATGATAATGT	alt_3685_fdr	2	18	6	6	14	5	7	4	9	2
CACGCTCGTAGTTCCC	alt_3685_fdr	21	37	28	19	47	23	39	23	50	15
GTATGGCTGGCATTAC	alt_3685_fdr	27	43	29	23	35	26	42	21	40	11
CCTAGTCGCGCAGTCT	alt_3685_fdr	16	57	21	25	53	20	41	21	43	22
TTTTTAGTTAAACGAC	alt_3685_fdr	31	81	34	31	66	42	68	26	73	25
GCTAGATATATCCATC	alt_3685_fdr	3	8	7	1	7	5	11	4	9	2
TCGCGCGACCAAGGCC	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGAGATAGCCCTT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCCTTATTGTGAA	alt_3685_fdr	5	18	6	9	14	5	16	4	14	6
TTCGATTTTTTTTTCG	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCGATAGGGAAGG	ref_3685_fdr	20	33	35	18	26	23	41	13	37	29
GAGAGATCTACCATCT	alt_3685_fdr	16	20	15	12	21	16	16	5	22	8
ATTCGGAATTAAAACG	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGGCTGAACGTAA	alt_3685_fdr	12	56	23	16	44	21	32	16	41	19
ACTTATAATTTTACGG	alt_3685_fdr	13	32	18	8	35	11	20	17	37	16
TTCGATTTTTTTTTTC	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTTCTTACGTGAA	alt_3685_fdr	5	1	1	1	2	2	8	0	7	0
AGACAATAAGACTAAC	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCGTCCGTTAGAT	alt_3685_fdr	14	35	45	20	22	24	33	21	45	15
TCCTATTGGTCGAGAC	alt_3685_fdr	15	35	30	13	31	13	31	7	32	18
TTCGATTTTTTTTTTT	alt_3685_fdr	0	0	2	0	0	0	0	0	0	0
TCTATTGTAGAGATGT	alt_3685_fdr	11	13	18	6	24	10	24	16	36	13
TAGCTACTATCAGCGC	alt_3685_fdr	35	65	41	28	79	28	67	23	81	30
TTAATGGTAGAACAGT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
ACAAATCCAAACAGTC	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TCATCATACCACAGAG	alt_3685_fdr	8	9	5	6	4	4	7	9	8	1
TACCGGATTCTGTTAA	alt_3685_fdr	9	14	8	2	8	8	14	6	12	3
CATGCGATTAGCCCGG	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
GAATCCTGCATGCACC	alt_3685_fdr	21	42	17	26	45	19	43	21	48	22
TAAAGTCCGACATGGA	alt_3685_fdr	51	68	47	38	111	42	99	29	79	42
TATGACTTGTTCGGTC	alt_3685_fdr	6	24	13	8	28	13	31	13	23	11
GAGTCCTTAAATGGAC	alt_3685_fdr	4	4	7	1	8	4	8	4	8	2
CTTCATAGCATGTTTC	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTACGGTGCACG	alt_3685_fdr	3	2	1	2	5	1	4	1	7	2
CAGGCTCCTTTTGAGG	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
ATTTACAATTCTTCCA	alt_3685_fdr	22	51	33	29	59	16	54	15	56	9
CATGCGATTAGACCGG	alt_3685_fdr	47	265	36	42	277	28	272	34	304	32
TAGTCTCTCTCTGATA	alt_3685_fdr	15	32	24	14	57	17	45	9	53	15
CATCGATCAGTGATGA	alt_3685_fdr	10	29	13	13	38	9	32	11	34	12
ATTCGGCCGTACCCAT	alt_3685_fdr	0	0	0	0	0	0	0	0	0	0
TACGGATCGCTGCCGC	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTCCAATATATGT	alt_940_reverse	167	51	189	170	77	144	64	145	86	119
TTGTTATTCACGATGG	alt_940_reverse	131	46	194	177	63	140	68	148	61	149
TGCTAGGCTAGTCCTC	alt_940_reverse	63	33	83	61	37	59	32	60	24	63
CGTAAATGAAATCGTC	alt_940_reverse	435	177	576	552	166	407	172	441	159	392
TTAGATGCTAGTTCTG	alt_940_reverse	101	37	118	86	29	70	43	103	44	101
GCTCGACCACTTCGGG	alt_940_reverse	816	305	877	897	327	740	293	783	351	693
ATTGATTACCACGCTT	alt_940_reverse	185	62	181	195	47	150	51	152	47	146
GTTTGATATCTGGTAC	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGGTCATAGTAG	alt_940_reverse	72	22	79	60	26	50	27	75	35	81
TATGCGCTAACAAGTT	alt_940_reverse	203	53	233	207	65	198	74	139	67	154
CGTAAATTCTCCACGT	alt_940_reverse	262	77	298	250	73	245	84	235	77	241
CACTCTGGCCCTTAGT	alt_940_reverse	24	10	39	30	5	24	15	13	9	20
CAGATGCATCTCATCT	alt_940_reverse	96	27	82	88	35	72	31	80	41	71
CACAGGAGTGCCTCGT	alt_940_reverse	57	31	81	80	48	35	24	60	25	50
AACCCTTATACCACCT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTTTACTCCCTGT	alt_940_reverse	48	34	60	55	32	32	26	44	24	41
GGTTACGACCTGACCG	alt_940_reverse	62	23	99	63	30	64	34	70	34	50
TCGTGCTCGCGTGTAT	alt_940_reverse	38	16	47	67	26	46	21	55	23	45
TAAGTTGTATCGCTAA	alt_940_reverse	76	32	87	94	24	60	28	91	23	60
CCAGTACCGAAATTGG	alt_940_reverse	24	9	32	30	13	29	9	39	9	29
AGGGTTCTCCTCACTT	alt_940_reverse	106	32	118	108	23	87	43	74	36	92
TGATCATCCGCTTTAT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GGTCTTGGATGATCTG	alt_940_reverse	28	8	30	24	8	30	4	26	9	17
TCCTAGTTGGCGTTCG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GAGGGTTGGTGCTCGT	alt_940_reverse	56	15	74	40	17	54	11	59	28	39
ACTATTTTAGGTTTTA	alt_940_reverse	319	108	513	418	140	335	132	361	124	294
CATGGGATTGATACGC	alt_940_reverse	54	17	76	66	24	53	23	70	20	51
TGAAGTTTTCTTACGA	alt_940_reverse	59	29	84	68	29	55	29	82	37	50
TGAGCTTTTTCGTTCG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCCCTGGCCCGT	alt_940_reverse	14	1	10	11	5	10	6	8	6	5
TGCACTGTTTCGTAAT	alt_940_reverse	33	9	29	36	10	27	16	24	7	21
CCATTGTTTCTAATTA	alt_940_reverse	78	25	81	72	31	63	41	74	30	49
CTGCATGATAGCTTCC	alt_940_reverse	84	35	140	80	40	87	40	87	37	91
AGTTTGTTCTCTTCAC	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGTGATCGTATCC	alt_940_reverse	108	44	169	135	51	121	35	131	52	113
CGTCTGCCCCATCTTG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
AACGCTTGAGTTTGGG	alt_940_reverse	200	70	301	270	70	268	98	224	89	253
AATGCTTAGTTTTGTC	alt_940_reverse	10	2	15	9	4	6	3	12	2	11
GAAATTTCCCGTTACG	alt_940_reverse	27	9	24	22	15	18	9	35	14	20
TTTGTTGGGTCGCCTC	alt_940_reverse	191	93	242	219	90	209	86	186	73	181
GATATGACCGGTGTGA	alt_940_reverse	18	1	36	31	13	26	11	30	18	18
GGTCTCTATTGATGTT	alt_940_reverse	121	29	119	106	44	96	52	107	34	102
CTGTCCTCTAGTACAT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTTCGCACCCCGT	alt_940_reverse	17	7	22	15	7	14	6	20	13	18
TGTACTGGCGACCCAA	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGTAGATCGCGGA	alt_940_reverse	276	130	368	348	127	287	135	328	146	250
TTTGTAAGACGATACT	alt_940_reverse	131	41	180	140	34	118	54	82	63	104
CGTCGAGTCTGCAGCA	alt_940_reverse	239	99	308	222	103	238	121	227	108	148
ATACTGATTGCTCTCT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
TATGAGCTACTGACCT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
ATTACCTCGTTCGTGT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATGGAGCTTTGG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTCTGCTTCTCG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GATGCTCTGGCCCAAT	alt_940_reverse	17	4	10	22	3	7	5	16	8	14
ATGTAACGCACACCGT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
CCTGAAACTACCCATG	alt_940_reverse	92	21	97	101	32	64	25	84	39	79
AGAGCTTTTTCTAGGC	alt_940_reverse	148	56	158	147	49	133	51	126	59	119
ACCGGATAAGCGCTCG	alt_940_reverse	51	18	80	58	16	50	27	68	19	69
CGCTCTGTTTAACATA	alt_940_reverse	39	12	52	35	22	27	16	39	22	36
ATCATTCTGATCAACG	alt_940_reverse	328	123	457	336	114	343	140	304	124	275
GGTGAGCCTGGAACCT	alt_940_reverse	637	236	796	668	241	622	220	645	241	569
AAGGTGCTTTGCTCAA	alt_940_reverse	226	97	283	252	114	190	100	210	135	200
CCCTGGGATGCCTATT	alt_940_reverse	32	18	39	27	23	27	28	31	27	33
ACATACTCGCGGTATA	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCTCTTCGTATAC	alt_940_reverse	16	9	24	18	7	24	9	18	7	13
GTTTCTATGATACGCT	alt_940_reverse	59	22	72	55	18	62	27	67	24	61
GATTGTGTCATTTTAA	alt_940_reverse	213	74	286	224	67	213	77	198	81	225
TGACGCTATAGTTTTG	alt_940_reverse	352	87	359	341	98	284	105	315	98	284
CCTAATCGATGGTTCA	alt_940_reverse	61	56	65	70	55	51	57	49	57	60
TTTTAACTAGGGTGGG	alt_940_reverse	25	6	25	33	8	22	6	26	4	22
TAGGATCAGCTTACAT	alt_940_reverse	59	15	89	72	17	48	24	60	21	43
CATGTTCTTCTCTTTA	alt_940_reverse	146	37	147	161	40	126	64	137	37	119
CCTTTGACTGACATCC	alt_940_reverse	444	167	469	455	161	367	152	368	143	342
TAACGGCAGTCTGTAA	alt_940_reverse	38	20	68	48	22	53	30	51	19	36
GATATGGTTGCGATCA	alt_940_reverse	207	59	234	266	64	226	61	217	54	186
ATCGGTTGTATGGTGA	alt_940_reverse	3	2	5	6	0	1	3	1	1	5
CTTCCCTGATCGCGTT	alt_940_reverse	72	28	101	78	29	77	32	71	33	77
GCCCGTTTTGACAGCT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
AACGGCAGCTACCGGC	alt_940_reverse	146	43	207	167	46	157	54	162	66	142
CATGATGTCGAATATT	alt_940_reverse	6	3	10	4	1	5	0	3	3	0
TGATGTGGGTAGTACG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTTCCGCTCAATC	alt_940_reverse	25	14	21	14	9	18	8	19	4	12
CCGGTTTCATAATGTT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGGCTGTGGCAGG	alt_940_reverse	132	64	180	164	58	126	48	148	52	123
TGATCTGCATAGGTGA	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
AGAGAGTTTGTTGATG	alt_940_reverse	68	36	90	88	37	84	34	69	34	68
CTGGTCGGAGGCTCTA	alt_940_reverse	51	18	65	53	17	44	23	50	21	43
TTCCTTGTGGCCTAAC	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GTACCTGGGATGTCGG	alt_940_reverse	17	3	19	21	10	16	6	9	9	11
CTCGCCTATATGCTGC	alt_940_reverse	270	138	388	306	163	226	166	267	156	220
GTTCCTGACATGATAT	alt_940_reverse	98	31	127	121	31	61	30	95	38	90
CCTGGGATTCACTCCG	alt_940_reverse	111	31	135	115	37	95	51	76	47	79
TCTTTATGAGCTTTGT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTCCGCACTTGCC	alt_940_reverse	4	0	2	8	1	5	1	3	5	2
TTGCCATACGTTAGCA	alt_940_reverse	144	44	140	149	46	119	62	154	43	132
TTCGCGTTTGGTATTA	alt_940_reverse	45	20	64	48	15	40	17	42	15	33
GGCTTTTATGGAAAAA	alt_940_reverse	191	77	237	196	76	166	81	193	94	134
TTCGCACCATGGTGGT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCACTCAAGCGAG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGTCGTGTGCTCC	alt_940_reverse	228	89	274	258	92	195	80	201	76	179
TCGCGGCATTTGCCCG	alt_940_reverse	100	37	76	68	23	56	33	56	34	74
ACTTGTCGAACATTTG	alt_940_reverse	80	34	85	82	34	66	28	63	25	75
AGCTTCTGTTTGTTGC	alt_940_reverse	40	20	55	50	19	64	28	57	24	49
CATCCTATAGCTGGTT	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGATATCTAGTAC	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCACGCTCGTGTC	alt_940_reverse	15	19	40	26	12	15	15	22	14	20
TCGGACCTGAGCTAAT	alt_940_reverse	225	62	271	228	79	216	73	203	86	205
ATCTCCATCTCCATAA	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
AGTGAAGATCACTCCT	alt_940_reverse	252	62	287	237	65	187	74	188	72	209
GATGCCGTCTTGAAAC	alt_940_reverse	59	14	51	60	22	49	23	41	19	36
ATTTGATTTTAGTTCC	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
TTACGTATTTTCCGCG	alt_940_reverse	0	0	0	0	0	0	0	0	0	0
TTTGAAGGTTGCCAAA	alt_1612_reverse	43	34	42	33	36	31	36	31	31	28
TTTTTTCGTGGGGCTT	alt_1612_reverse	4	8	9	12	8	11	11	10	9	3
TTGGTCGAGTTAGCTC	alt_1612_reverse	23	30	22	19	22	21	24	25	22	16
TCATCACCTGATGGGT	alt_1612_reverse	49	35	43	32	35	25	35	39	36	29
ATGCCCCGGTCTGAGA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
ACAACGCATATTCCTT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
CGAGTCCGTCGCTGTT	alt_1612_reverse	4	1	1	3	1	7	5	1	3	3
TCCTAGTAGATCACAT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GGCAAGATGCACCGCT	alt_1612_reverse	4	5	4	4	3	7	4	4	10	5
GTGATTGGGAAGTTAA	alt_1612_reverse	12	9	13	6	12	9	6	7	7	7
GGATATCATTCCCTGT	alt_1612_reverse	35	59	45	36	41	42	79	30	60	35
CGGGATGTACTAATTG	alt_1612_reverse	181	195	198	174	170	175	200	171	211	169
ACGCAGTGAACGGTGA	alt_1612_reverse	15	13	20	15	12	12	20	10	13	15
CCAGTAATTTCAATAA	alt_1612_reverse	7	9	12	7	10	7	15	8	2	8
CAAAAGTCTGCCACCG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTAAGCTCACCCCGAC	alt_1612_reverse	21	23	24	12	26	22	32	22	16	6
GTATGCCCTCTTTTAT	alt_1612_reverse	9	13	18	9	9	21	16	13	13	11
GGCACGAGTAGACATT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GACCAACCTCGGGACT	alt_1612_reverse	16	20	17	9	13	13	12	14	23	13
TGACCGTATGCCGTTC	alt_1612_reverse	2	2	9	8	6	3	6	3	4	4
CGGCCGAAATGCTCTT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GGATCTTAGCAAGGAT	alt_1612_reverse	123	124	131	126	99	111	130	99	152	98
CCTTAACTCGGGATCA	alt_1612_reverse	125	154	180	170	128	121	167	134	129	137
TTCGTTGGTTTTTACC	alt_1612_reverse	49	65	61	54	66	44	67	55	55	46
CGGTCTAAATAAAAAT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCGGCAGTCTAAG	alt_1612_reverse	34	59	63	46	49	49	66	39	70	27
AACCTCTTAAATGCAT	alt_1612_reverse	47	64	75	44	51	54	61	42	81	43
TGAAAGGTGGTTGGGC	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGGCGAACCTACC	alt_1612_reverse	15	6	19	9	14	16	9	11	23	16
TGTTCTATCCATTACA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
ACCGGCAGGATCTGAC	alt_1612_reverse	8	20	7	2	25	5	21	7	25	5
TCCGGTTCGTTATTGA	alt_1612_reverse	47	53	90	51	68	52	76	60	61	48
GGTGCAGCAGCTAGCC	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGCCTATTTTGCC	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGAACTTTGAATC	alt_1612_reverse	14	13	25	10	19	22	16	14	15	21
CCCTCGTTATAGTTAA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
AACTCGGAGCAACGTC	alt_1612_reverse	30	42	42	27	34	41	39	32	58	44
AACAACATTATCATTT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCTTTAGTTTCGC	alt_1612_reverse	55	65	66	42	48	50	69	57	70	55
ACACCTTACCCCCGTT	alt_1612_reverse	0	11	3	1	9	1	7	1	10	1
GTATATAGCTGGGCTA	alt_1612_reverse	6	7	5	8	6	4	5	3	3	7
AGCACTATCCTGCTGG	alt_1612_reverse	12	20	25	26	18	32	22	15	24	14
CTATGGCACGCTCTAG	alt_1612_reverse	16	16	23	18	14	21	21	13	29	15
CTGCGACTTTCATGGT	alt_1612_reverse	12	19	14	8	18	13	13	16	13	11
CGACTATCGAACCTCG	alt_1612_reverse	31	36	33	40	38	32	47	28	50	21
AGCTGCACGTGGCTTG	alt_1612_reverse	20	16	30	19	23	13	18	19	15	23
CATATGATAGCAGGGA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTAGATTGGGTTCTGG	alt_1612_reverse	43	67	67	58	62	45	70	48	54	56
TAGGCTATCGGCTCGT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGTTCATGAAGCG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTGTTACGTAAGA	alt_1612_reverse	22	23	20	23	16	20	20	14	23	14
ACATCTATCGAAGGGC	alt_1612_reverse	16	10	18	17	11	17	12	22	16	20
TTCGTCCATGCCGCTA	alt_1612_reverse	16	19	24	14	20	9	13	13	10	13
CCTGTTACGTCGTTGA	alt_1612_reverse	4	4	5	5	3	3	8	3	8	1
CGTCCGTGTTTACGGT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCAGCACCAGTCC	alt_1612_reverse	23	29	37	20	24	26	36	29	41	28
CGCCTCACCCTCAGTC	alt_1612_reverse	0	2	0	2	0	0	2	0	2	1
CTTGATAATGCTGTGT	alt_1612_reverse	26	37	28	38	34	35	38	42	40	36
AACCTTACAGCATCGT	alt_1612_reverse	30	36	38	21	61	28	33	36	29	32
AGCCTTTTGTTCTTGA	alt_1612_reverse	51	66	39	37	52	49	67	33	62	41
CTGGGGGTCTCGGCCG	alt_1612_reverse	14	7	17	19	12	12	14	9	18	10
GGTACGACTTTCTAGG	alt_1612_reverse	12	12	12	6	17	7	9	12	9	4
GCTGAGTGGAAATTAA	alt_1612_reverse	8	4	5	5	8	3	7	5	7	7
ACGTTCTTATGTGGGT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TATAGAAGTTCCTCTT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
AATAGCTTGTTTTCTG	alt_1612_reverse	29	34	52	38	52	32	52	34	42	33
TGATGGCCGGTTAATG	alt_1612_reverse	76	78	70	76	67	65	80	63	81	76
GCCCCGTTTCAAAGGG	alt_1612_reverse	22	9	22	14	13	14	10	10	17	19
CCTTATGTAACCTTTG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTAATATGGAAATTTA	alt_1612_reverse	31	31	48	32	30	32	36	24	45	32
AACGGTCCGATGCACA	alt_1612_reverse	13	12	20	16	9	14	13	14	13	18
TGTACAAGTAGTTAAG	alt_1612_reverse	15	5	11	7	5	9	3	7	9	10
GATTCCGCTATCTATA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTTCGTACATTTTTCG	alt_1612_reverse	11	17	12	5	10	6	8	8	11	14
CTTCGTGTTCAGCTAG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTGCTTGCAGGTT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGAGATATGGGAG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
CTCCGGTGTATAAGGG	alt_1612_reverse	84	63	82	81	72	63	70	55	65	67
GTGTGGTTACGTTTTT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
AGTTATCACATGGCGG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
ATGTACTTGGCGCGCC	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTGTTAGGGTTTT	alt_1612_reverse	111	113	145	95	107	115	123	129	122	78
GCGCTAGGACTTGTAG	alt_1612_reverse	33	32	48	41	43	36	47	31	52	36
CAGTTTTTATCTATCA	alt_1612_reverse	1	0	1	0	0	0	0	3	0	1
CTGTGTACCTCTTAAT	alt_1612_reverse	66	66	81	61	64	60	59	61	84	50
TACATCTGTTCCCGTG	alt_1612_reverse	6	16	5	3	12	3	10	10	18	4
CCAATTAGAGAATACC	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
ACGTAGTTCCCTGGTA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
CATTTCACTCCAAAAT	alt_1612_reverse	55	52	46	39	48	31	67	34	62	31
AGTGACTTTAACCAGA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TGAATCCATGTCTCAG	alt_1612_reverse	11	13	8	10	15	7	12	5	23	11
CAGAAAAGGACTGTGT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCAGCGCATAGTCAGT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTATGTTTGCTTA	alt_1612_reverse	70	66	89	67	73	80	92	81	101	67
GTTCGTCCCCCCCGGT	alt_1612_reverse	35	32	31	46	31	24	35	33	36	26
ATTTGTCTGACACCAC	alt_1612_reverse	8	6	9	4	8	4	18	6	8	7
CAGCGATGCGTGGAGG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GGACACAAACGACGAC	alt_1612_reverse	19	10	28	27	8	17	21	19	27	19
TTCGATGGACTAAAAT	alt_1612_reverse	93	88	97	99	97	86	119	79	92	71
TTGGGGCTCACGTTTC	alt_1612_reverse	30	28	38	37	34	26	30	35	31	24
ATAGGGGCGTCTAGCC	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCCTGCTGTACACCGA	alt_1612_reverse	140	151	126	131	121	117	122	97	142	129
TCGGGTCGCGATGATC	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
CTAGGCGCCTTGATGT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCTCTCTCAATGTTAT	alt_1612_reverse	7	21	9	10	26	13	20	8	18	7
AATACGCTGCGTGCTC	alt_1612_reverse	31	32	29	32	39	35	39	37	40	30
CATTGCAGTACTTCAG	alt_1612_reverse	22	12	29	21	19	16	24	22	27	13
TCGAACTGGGCACCAG	alt_1612_reverse	37	34	48	31	45	41	38	49	37	42
ATCCTCGTAATATTTG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCGAACTAACCCA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
CCATCCCAAAACGCCA	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GAGAGCTGCCCCGCCG	alt_1612_reverse	2	7	4	4	9	2	6	0	4	1
GCAAGGGATGCGCGTT	alt_1612_reverse	17	10	10	15	20	12	26	6	17	12
TAGGTCCACTCCTCGG	alt_1612_reverse	3	4	4	2	5	1	12	2	5	4
TAAAATATTGCGTTAA	alt_1612_reverse	24	28	36	25	23	25	33	21	38	29
TTCCGCGATACGTAAA	alt_1612_reverse	11	3	14	12	9	8	13	9	12	5
TGCTTTCCATGTCTCT	alt_1612_reverse	16	17	19	17	14	16	27	11	25	12
CGATTGTCCTGAAGGT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGACTTGTTACT	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGCCTCTGTTTCG	alt_1612_reverse	0	0	0	0	0	0	0	0	0	0
GTTTACGATATTTATC	alt_2754_upstream	36	70	65	40	62	46	45	49	54	52
CAAGCTTGATTGCCTG	alt_2754_upstream	23	49	34	36	45	30	38	36	53	22
AGTTCACACTTTTGAA	alt_2754_upstream	11	22	14	12	17	13	18	10	13	5
GTTTCGCGCCTTGCTA	alt_2754_upstream	100	125	108	87	113	75	137	77	126	93
TAACAACAACCGCAAC	alt_2754_upstream	2	6	3	4	6	1	9	5	9	6
TGATGAGATTTGGCAG	alt_2754_upstream	58	77	73	65	65	58	75	52	77	52
AATAAAGAAGTTCTAA	alt_2754_upstream	4	3	8	10	13	8	6	3	10	6
CTCATTAAACGATGCA	alt_2754_upstream	77	111	85	69	93	84	101	75	81	64
ATCCTACGAGCTGTCC	alt_2754_upstream	36	44	47	36	27	42	40	36	45	21
CTGGGTTGCCACACCA	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTTGGATGCTTAG	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCTTTGGCAACCA	alt_2754_upstream	42	64	54	44	45	54	55	43	65	31
TTCAGTATGATAGCTG	alt_2754_upstream	14	22	22	13	24	16	25	8	21	16
CCGCCTTGGAAATCCC	alt_2754_upstream	25	41	35	39	54	23	58	25	58	22
TACGGGGCAGGGTGGG	alt_2754_upstream	13	25	25	16	13	22	15	13	8	11
ACGCTACCTGTGACCT	alt_2754_upstream	3	18	22	18	14	16	18	16	16	3
TTCTGTAACATAGCAC	alt_2754_upstream	35	44	44	33	62	34	46	39	46	35
GTCAACGCTGCTCAAT	alt_2754_upstream	33	61	65	63	59	55	70	34	60	36
ATAATAGCTAGCTCCT	alt_2754_upstream	23	34	29	29	25	17	30	18	35	13
AGCTCTAGGTGGACTC	alt_2754_upstream	71	76	95	77	90	58	77	58	100	72
TTGTGGTGAGTTGTCT	alt_2754_upstream	243	336	293	237	355	257	362	227	355	215
CGGCTCCCGCAGGTCG	alt_2754_upstream	50	63	67	45	52	56	60	60	76	42
CCCCCTCGGGAGGGTG	alt_2754_upstream	60	86	76	59	82	56	94	48	101	51
GTTCTTTGCTAGGAGC	alt_2754_upstream	51	66	54	52	84	46	54	38	55	52
CTTGAGGGGTAGACGC	alt_2754_upstream	18	23	13	12	14	15	18	16	15	12
TCGGCTCGAAGTTAGC	alt_2754_upstream	0	2	4	7	2	3	5	1	3	1
ACGGAGGTCAGCGCCC	alt_2754_upstream	62	107	84	74	115	71	93	74	79	60
GTAGATCAGGGTTATT	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
ATAACACTGTAATTAT	alt_2754_upstream	84	89	84	71	70	78	88	65	77	56
TTGCTCTTCAAGTGTC	alt_2754_upstream	32	55	31	38	21	28	54	29	38	29
TGGGCGTCCTGCGCTC	alt_2754_upstream	15	33	12	12	22	19	26	12	20	10
CCGCAAGAATGTTGTA	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTCAGACGTTTCT	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAGTCTTCTACGC	alt_2754_upstream	3	11	2	5	10	8	8	1	8	9
TCCGGCCGCGTAATAG	alt_2754_upstream	6	2	4	0	8	2	1	1	3	2
AGGTGCTGTTATTTGC	alt_2754_upstream	62	87	71	64	79	54	85	56	99	52
GCCTTCTTAATGACTG	alt_2754_upstream	34	43	53	37	39	37	46	27	50	31
GACTGTGCACATTAGT	alt_2754_upstream	65	87	79	77	101	67	103	72	120	62
ACCTGGCAGTCTTGGG	alt_2754_upstream	24	38	28	26	42	23	41	23	39	29
TGCTACTTGACGGGGC	alt_2754_upstream	30	73	42	39	45	45	45	43	48	38
CTCGAAAAGACTTCAT	alt_2754_upstream	38	36	54	39	41	25	31	16	61	28
CGATACTCGAGTGCAC	alt_2754_upstream	123	140	139	153	142	123	162	103	184	93
CCGTGATATGCTTCAA	alt_2754_upstream	23	52	21	22	37	26	37	32	51	34
ATAGTGGTTTCTAAGG	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCCGGGTCAGCTA	alt_2754_upstream	278	337	349	282	373	292	338	246	365	244
CCCGATTTCTACTGAC	alt_2754_upstream	3	0	2	0	7	3	4	4	5	3
AGTAACGCAACTGTTG	alt_2754_upstream	24	29	34	24	36	16	40	19	30	20
CAAGGATGTTACCTTG	alt_2754_upstream	55	66	54	42	50	52	92	41	93	53
CAGCACGAGCTGGCGG	alt_2754_upstream	3	4	1	2	3	1	0	5	9	2
CCGCGTAGGTCCTTAG	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCCCAGTTTGGGG	alt_2754_upstream	15	8	5	8	7	9	6	5	17	2
TGTGCCGGGCTAGTAT	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
ACCTCCTAATCACAGA	alt_2754_upstream	127	101	113	100	140	110	147	100	156	118
TATTTCATGGCAGTGT	alt_2754_upstream	12	17	9	16	16	17	17	15	19	4
GCCACACATTGCTGTT	alt_2754_upstream	6	49	5	7	35	12	43	8	35	7
CACGGTTAGGCTTAAA	alt_2754_upstream	2	2	0	3	4	5	2	6	3	3
TTCATTTTCGGTATGG	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAGGGCTTTGTGG	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
AATAATTATTAAACGT	alt_2754_upstream	20	19	17	26	26	27	23	14	22	17
TTGTCTGCCATTTGTT	ref_2754_upstream	36	34	37	25	35	33	34	25	47	30
GGAGGGGCCTAATCGC	alt_2754_upstream	86	123	114	99	100	106	115	85	102	81
CCCGAGCCGCCCGTAC	alt_2754_upstream	106	147	102	119	174	99	192	101	162	98
TGCATTCTCTTTGTGT	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTAGGGTTAACTA	alt_2754_upstream	8	8	11	10	10	12	15	8	8	10
TCCACTCATATTTCAT	alt_2754_upstream	8	10	6	8	4	10	9	6	5	10
GCCGGTGTGGGTCCTT	alt_2754_upstream	3	12	6	8	8	7	10	3	9	6
AGTTTCGAACTGCACG	alt_2754_upstream	35	44	57	58	33	40	42	51	56	38
CTTAATAGAGGGGTTT	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
AGCGATACGTACACCT	alt_2754_upstream	4	25	17	16	20	13	29	16	22	13
TCTGAAATGCGCGCAA	alt_2754_upstream	50	60	63	50	49	45	78	56	48	39
AGCATACTTCCCTACT	alt_2754_upstream	25	27	26	14	37	22	36	19	31	26
AGGGCAGTATCTAAAT	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
CGTCACACCCTCCTTT	alt_2754_upstream	5	12	13	5	7	12	3	12	20	7
TGTGGCGAGATCGCGG	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
GGGAAATGACAATTAA	alt_2754_upstream	30	29	36	45	41	23	41	30	34	27
AGTCCCGGCCGAAAGC	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGGTTGATATTCC	alt_2754_upstream	8	6	5	12	14	8	6	5	6	6
GACCTGTCGTTGTGAC	alt_2754_upstream	88	130	77	85	124	65	139	60	150	72
TAGTGTCTGTTGGCAA	alt_2754_upstream	0	0	0	0	0	0	0	0	0	0
TGACTGTCTCAGCTAG	ref_6022_new	5	6	8	8	11	13	20	8	7	11
GTTCCACACACCGGGT	ref_6022_new	50	36	52	35	46	39	40	47	31	41
CACCCGGAAGTTTAAA	ref_6022_new	2	6	6	2	4	4	0	3	7	5
TACAGCGGCGAAATTC	ref_6022_new	111	90	127	109	94	85	88	106	107	103
TGTCCTAGACCATAAA	ref_6022_new	12	16	18	13	19	11	19	17	13	14
ACATGGTCATTTCACC	ref_6022_new	19	15	11	6	10	12	10	6	14	9
AGCGCCTCAGCTTACC	ref_6022_new	6	22	10	4	25	6	27	7	23	8
CCTACTCCCTGCCGTC	ref_6022_new	0	15	1	4	9	4	11	4	8	2
CCCATCTGGGTTTATG	ref_6022_new	0	0	0	0	0	0	0	0	0	0
TATACTACGTATATTA	ref_6022_new	126	110	133	112	110	98	108	113	97	92
CCAGGTAGCGCTTTCT	ref_6022_new	15	37	15	18	31	13	39	10	48	15
TTCAGCCAATTACTTT	ref_6022_new	29	42	50	28	32	31	32	21	32	27
CAGTGGTATCTCTTAT	ref_6022_new	0	0	0	0	0	0	0	0	0	0
GTACTTCCCATTCCTG	ref_6022_new	33	37	58	37	48	41	33	42	39	23
TGTTGTGGTAGATCTG	ref_6022_new	62	59	81	44	57	66	53	59	74	64
CCTGACTATCTCAGAC	ref_6022_new	27	27	31	27	24	16	10	18	19	23
GGCCCAGCTTAACAAG	ref_6022_new	11	10	24	19	11	13	12	9	15	21
ATTTGATGCGTGGCAA	ref_6022_new	0	0	0	0	0	0	0	0	0	0
GTCAATGTGTGGATAC	ref_6022_new	135	145	159	114	136	102	151	120	157	92
CGTGGAGGCTTTACGG	ref_6022_new	19	17	19	18	15	19	24	20	11	18
GTTGCTGTACTGTAGC	ref_6022_new	32	50	44	47	67	43	49	46	54	37
TATACCAATTCGGGGA	ref_6022_new	30	67	28	27	44	27	54	18	55	12
AATTCTATTACATATA	ref_6022_new	103	107	121	111	132	93	112	101	108	112
AGTGCGAACATGAGCA	ref_6022_new	0	0	0	0	0	0	0	0	0	0
AGGGTTTTCAAGGTTT	ref_6022_new	109	75	114	101	122	93	94	88	120	107
AAGCGCGCGAAAGTTT	ref_6022_new	58	63	65	76	46	58	65	59	56	60
TGGGGGTACTCTTTTA	ref_6022_new	18	22	18	16	12	15	18	18	24	13
GTCCGTTAGTATCTGA	ref_6022_new	7	7	6	3	5	2	8	7	7	4
CCTGTAAATTGATATA	ref_6022_new	29	21	36	24	19	29	26	26	30	32
TATGCCTTAAGGACTT	ref_6022_new	18	21	21	11	19	13	23	23	22	22
AGTTCATCGTGTTTAG	ref_6022_new	38	30	41	38	46	36	38	36	40	21
TAGTACCCCTCGAGCT	ref_6022_new	0	0	0	0	0	0	0	0	0	0
CTATATCTGTTCTACT	ref_6022_new	48	36	42	42	37	35	19	39	38	38
TTTCTTTTTAGCGGTT	ref_6022_new	174	143	214	160	152	159	151	190	154	158
CGCTATGTTCGAGTCA	ref_6022_new	0	0	0	0	0	0	0	0	0	0
GATCGAAACCACATAG	ref_6022_new	94	63	100	91	92	114	83	91	81	75
TAAGTCCCATCATATG	ref_6022_new	17	17	28	21	26	16	18	30	32	16
TTGAAGACTATTCCGC	ref_6022_new	21	19	44	27	28	23	22	34	37	19
ACGACTTTGGTCCCTC	ref_6022_new	106	115	139	153	109	115	105	120	110	109
TTCAATTGGATCTGCA	ref_6022_new	71	53	85	77	49	55	53	54	58	61
CTCTCTTCGTAGATGC	ref_6022_new	0	0	0	0	0	0	0	0	0	0
ATTTATTCATTGTAAA	ref_6022_new	0	0	0	0	0	0	0	0	0	0
GACAACGCGCTCATAG	ref_6022_new	29	33	29	27	23	32	46	19	27	26
ATCCAGGGCGCATGGT	ref_6022_new	17	9	14	8	14	12	9	6	11	11
TTGCTCTCAGCGGGGA	ref_6022_new	0	0	0	0	0	0	0	0	0	0
CGGCGATGGTGTCCTT	ref_6022_new	0	0	0	0	0	0	0	0	0	0
TATTTCTGTCGGGGCG	ref_6022_new	42	60	68	42	44	40	47	30	43	42
AGTCTGTCACGGCCTT	ref_6022_new	23	34	23	25	26	25	30	25	25	21
TTTATTCCAGTGGTAG	ref_6022_new	0	0	0	0	0	0	0	0	0	0
TTCGTCCTACTGCCGA	ref_6022_new	26	26	29	23	19	27	21	17	26	27
TACAAACAATAAATGC	ref_6022_new	51	35	56	51	39	47	43	51	47	37
TGCGCCCGTGGGTTAC	ref_6022_new	16	19	11	9	9	18	10	14	13	12
AGATCCTCTTTCATAC	ref_6022_new	0	0	0	0	0	0	0	0	0	0
GCTAAAGAATCGGGGC	ref_6022_new	16	17	18	25	7	18	13	23	22	15
GGTTAATTCACACAAA	ref_6022_new	21	14	22	19	15	14	19	17	14	19
TTAAACGTGACGCATT	ref_6022_new	86	91	118	125	116	121	96	108	89	88
GGTCGTTCCGCACGGA	ref_6022_new	510	376	471	470	327	455	351	471	361	399
GACCTATTTTGTATAG	ref_2069_upstream	47	75	61	41	75	37	67	44	102	31
ATGTTCTGTGTATTTT	ref_2069_upstream	85	159	115	80	182	93	177	88	172	87
ACGAGTGTCAGTGCGT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
AGGTACCTATGGTTGC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTCTAGTTAAAAA	ref_2069_upstream	9	13	13	8	12	6	11	6	18	6
CGCACCTCAGTGGCGC	ref_2069_upstream	20	36	25	35	46	33	52	26	52	13
GTTGTTGATAATCCAA	ref_2069_upstream	11	18	8	11	18	14	16	8	25	17
CTAAGTTCACATGACT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
ACGAGCACAGCCGCTC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCTTTGATGCCTC	ref_2069_upstream	93	211	93	89	233	73	199	72	213	61
TGCGTCATTACGTTCG	ref_2069_upstream	29	34	18	23	35	33	46	20	35	23
GTCAACCAGTGCGTCA	ref_2069_upstream	12	12	12	27	28	4	25	16	16	14
TTCCCCGAGGCCTAAA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGTCTGCGTGTTT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TCCGATTAGTACCATG	ref_2069_upstream	5	9	8	9	2	6	8	6	11	5
GATCCATTAGCTATTT	ref_2069_upstream	50	75	64	44	62	50	69	53	85	51
ATCCCTATGTCGTTAC	ref_2069_upstream	33	42	46	45	56	37	76	43	57	30
TCAAAAAGGCTTTAAA	ref_2069_upstream	50	112	78	87	137	49	137	47	131	67
TGAGGATATGGCTGTC	ref_2069_upstream	46	71	73	62	61	53	59	50	84	35
GTGCAGTTTCATAGTG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCAATGTTCCTTT	ref_2069_upstream	31	42	32	38	35	23	46	25	47	21
TGTGGTTTTCAGATGG	ref_2069_upstream	2	9	2	5	10	2	9	8	6	3
CACACAGACGTTTAAA	ref_2069_upstream	29	28	19	24	37	23	22	17	35	20
CCCTAGTAGTTGGTGC	ref_2069_upstream	32	59	28	21	59	27	68	27	74	25
TGAGCTGGATGCCTCG	ref_2069_upstream	6	29	15	12	33	14	25	10	32	22
TTGATAATATTCACCC	ref_2069_upstream	7	9	15	11	19	12	15	5	16	11
TTATTCACGGAGACTT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTCGTTTGTACAT	ref_2069_upstream	10	14	8	14	19	6	15	4	12	12
CGATCAGCCGTTCTCC	ref_2069_upstream	7	16	8	4	11	7	8	7	12	2
ACGAATCGTGAGTTCG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAATGGGGCCTAA	ref_2069_upstream	37	47	38	26	65	35	45	37	53	33
GGATCCGGACGTTCTT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CACGTTCGAGTGTTAC	ref_2069_upstream	3	14	4	2	15	4	15	4	13	2
GGACCGGCTACCGTTT	ref_2069_upstream	0	2	1	2	0	0	2	1	1	1
AGGAGATTCCAAATCG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
AACCCCTCTTAAGCGT	ref_2069_upstream	3	10	11	7	18	6	11	12	11	5
CGCTCTGGTCTCTCTT	ref_2069_upstream	13	10	13	15	26	10	29	7	13	10
GAGTCATAACACCCAT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TACGTTGTTTTAGTAC	ref_2069_upstream	49	90	49	40	62	37	79	32	58	40
ATCTACCTGTGGCTAG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CTCTAAAACATGCTTG	ref_2069_upstream	13	63	42	26	65	13	56	27	68	34
ACCTACTTTTACGTTC	ref_2069_upstream	33	65	60	66	70	52	86	41	78	48
ACCCTATGGGTACCGC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GCTGAGATACTAATAG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GCTATAGTAGTGTGGA	ref_2069_upstream	25	51	42	29	30	23	43	29	47	24
TCCCATTATGGTAGTG	ref_2069_upstream	115	180	108	98	148	84	173	72	184	81
TCTGTCTACTCCAGCG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCACTCAGACCAG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTTGAATATGAGG	ref_2069_upstream	26	38	47	30	34	19	31	21	35	33
TCTCCAGCTGCAACAG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTTCTTCGCTTGC	ref_2069_upstream	82	57	112	86	75	76	77	90	100	70
GCTTACTTTGACAGAG	ref_2069_upstream	8	22	23	15	24	22	22	15	36	14
GAATCCATGTCTCCTC	ref_2069_upstream	24	43	31	37	53	20	47	34	56	28
CCGAGGCTCTTAGCGC	ref_2069_upstream	13	9	18	14	25	8	11	10	23	9
GATTGGGTATTTTATG	ref_2069_upstream	0	0	0	0	0	2	3	0	0	1
CATCATGTATCACGAT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCCTATGTATTTC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
AGTTAGGGAAGCTGAC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
ATGGATGAGTTTGGTA	ref_2069_upstream	44	107	71	48	96	64	105	63	103	46
ACACACTTCGTCGCAT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
ACATAAATGCACACCG	ref_2069_upstream	14	14	10	14	17	2	16	14	10	10
GAGAAGTTGGGGAGTA	ref_2069_upstream	6	18	10	12	10	11	12	7	12	10
GGAGAGCACTGTAACT	ref_2069_upstream	7	32	19	13	21	12	20	19	21	8
AATGGACGTGCCCGGA	ref_2069_upstream	5	2	4	2	1	0	3	2	8	2
TTTGTCTGATCTCGCT	ref_2069_upstream	15	27	22	23	39	19	26	17	22	17
CTTGTACTCGCATGAT	ref_2069_upstream	26	57	38	34	55	29	59	24	46	16
AATCATGAGGCGATCA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TGTTACCATCTAGCTG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTTGTTTATTGGA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGGTATCTGTACT	ref_2069_upstream	21	36	23	14	24	25	17	12	30	14
GATAATACGTTTGCTT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGGTTGTCTCCTA	ref_2069_upstream	30	51	40	38	50	33	46	38	50	32
GGGTGTGATACACCAT	ref_2069_upstream	19	21	7	12	44	15	19	14	34	10
CTGTCGGTGGTATGAT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CATTTGTCAAGCCGAT	ref_2069_upstream	28	22	37	14	22	21	28	18	26	15
TACTTATAGGCCGTTA	ref_2069_upstream	0	3	2	4	1	1	3	1	0	1
TTACCTTATATTTGCC	ref_2069_upstream	32	70	47	38	53	27	79	17	71	26
CATCACATCTCGTGCG	ref_2069_upstream	6	6	6	3	3	2	6	3	7	4
CCCATTTGAGCGTCAG	ref_2069_upstream	20	43	31	24	30	23	44	23	33	18
GAATGGATTGTGGCGC	ref_2069_upstream	9	15	11	13	13	16	21	11	14	10
GAGGCGTTGCCTATAG	ref_2069_upstream	20	21	19	10	26	15	25	17	36	11
ACTTAGCTTACCATAA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGCCGAGAGGTCG	ref_2069_upstream	0	7	6	3	5	5	10	8	4	7
CGCGAGGCTAGTGCTT	ref_2069_upstream	36	92	47	53	103	27	104	29	98	36
TTTTTCACTGTGAATC	ref_2069_upstream	5	11	9	3	11	9	10	3	6	6
TCACCCGCCTCTAATA	ref_2069_upstream	33	43	42	41	24	30	37	24	41	31
AACTGTCGCATTACGT	ref_2069_upstream	6	5	4	6	6	5	7	0	4	3
TTCTCTCGCTACTGTC	ref_2069_upstream	1	0	0	0	0	0	0	0	0	0
TTAGGGCACCATCGGG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GGTACCATTGTGTTCG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
AGACGTCGACGCGGAA	ref_2069_upstream	9	17	15	18	18	14	17	11	19	12
GCCAGGCATAGGTCGC	ref_2069_upstream	10	29	15	5	19	8	28	11	18	12
ATTGGGGTGACTACTG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CAGAATCGGGCTCCCG	ref_2069_upstream	14	18	13	17	11	8	9	10	18	6
ATCGGTACTGCACACC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CTTATCTAAAGTGTGG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TTGATGTTTATACTCT	ref_2069_upstream	52	76	83	43	85	45	75	59	108	39
ACTGTTATTTAGAGGG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CACATCTCGATAATTT	ref_2069_upstream	34	43	45	31	44	16	52	35	31	32
TGATTCCTAGCCATCC	ref_2069_upstream	3	4	2	4	5	3	5	1	7	1
TGTATCGCCTAATTCC	ref_2069_upstream	12	28	20	20	30	16	33	26	26	14
ATTAATTTTTTGCTTC	ref_2069_upstream	6	10	4	11	12	6	7	7	6	9
TTTCCGCTCATACGGC	ref_2069_upstream	13	23	25	18	21	6	19	12	21	12
CGCTAGTTTCGAGTAT	ref_2069_upstream	10	24	16	13	15	10	15	9	16	13
CTCTTGCATTGGCGCC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTAGGTTGTAGGT	ref_2069_upstream	32	53	38	20	46	29	56	21	52	15
CACTGTATATATATGA	ref_2069_upstream	24	38	29	29	44	25	38	26	35	26
AACGTTCGGCAGGCTC	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GCTTCCCATGCTGTGG	ref_2069_upstream	13	54	32	26	40	15	34	24	37	21
CTCAACCTATTCTCGG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
GCGAACTCCGGTGCTG	ref_2069_upstream	48	56	51	52	53	39	53	46	52	29
TAATTCGGTAATACCT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTCTCCCCAGGTT	ref_2069_upstream	13	48	18	14	48	15	56	13	44	16
CGTGTATGAGTGAGGG	ref_2069_upstream	11	25	11	29	30	18	31	12	26	13
ATGTTGGTTCTGTGAC	ref_2069_upstream	8	11	9	17	7	6	9	12	14	8
CGCTCATAGGGTCACG	ref_2069_upstream	10	18	11	18	12	15	18	13	22	14
GTACGGTATTGTTTGC	ref_2069_upstream	14	11	15	12	14	5	18	15	20	13
TCCCATTTTGGTAGTG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
AATTGATTCTGAAGTC	ref_2069_upstream	9	18	11	7	15	7	9	5	17	9
CCGCGTTCTCAATCGC	ref_2069_upstream	13	12	9	11	11	7	18	4	17	8
TGCTGGTCTGTGATTA	ref_2069_upstream	16	16	9	11	27	16	22	12	15	8
TAATAGATCCTGCTCC	ref_2069_upstream	52	89	65	64	90	45	77	72	106	48
CGGTCTTGATTTGTAG	ref_2069_upstream	10	7	4	5	9	8	5	6	15	11
TCCCATTAAGGTAGTG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGCTCGTTAGCAG	ref_2069_upstream	29	39	23	22	38	30	41	21	45	26
TTTACCTTGGCGGATG	ref_2069_upstream	139	247	172	121	230	137	234	119	256	119
GTAGCGGGTTTGGCTA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TAAACCAAGGGGTTGG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGGAGTTAAAATT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCCTTCTGGTGGT	ref_2069_upstream	1	0	2	1	0	2	1	2	0	0
CAATGGATTCAGTACG	ref_2069_upstream	19	27	22	18	33	9	33	8	30	15
TCCAGGCTCACCCCTG	ref_2069_upstream	10	33	26	9	54	9	61	22	49	18
TTCTCGTTATGCCATG	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGCCTGGGATAGG	ref_2069_upstream	83	115	77	86	118	76	138	72	137	65
AATACTATAGGCGGTA	ref_2069_upstream	17	20	15	14	27	20	28	24	27	15
AGTGGTTATTTAGATA	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCGTTCGATCCAA	ref_2069_upstream	8	12	15	10	10	11	11	7	6	6
TCGTATCGTTTAGCTT	ref_2069_upstream	0	0	0	0	0	0	0	0	0	0
CGTCAGCTCGTGGTTG	ref_2069_upstream	215	349	265	262	360	232	335	245	369	229
AGCTCACGACAGATGG	ref_3143_fdr	126	79	183	136	71	118	97	134	105	136
TTTATATTGGTGGTGT	ref_3143_fdr	22	25	29	30	17	33	13	28	24	19
TACTAGCTTTGGACCA	ref_3143_fdr	30	25	35	19	13	14	30	26	16	30
GAAAGAGGAGAGGTTG	ref_3143_fdr	50	38	48	50	30	39	35	45	62	52
GGTTCCTGTGGATGCG	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CCATTCAACATTGGAG	ref_3143_fdr	139	95	146	106	88	103	83	110	102	114
GTTAGAATGCAAGTCC	ref_3143_fdr	15	18	42	25	16	24	21	32	32	15
CTTTCCGAATATAGCA	ref_3143_fdr	21	15	34	21	6	16	11	17	17	25
TTTCAATGGTTCAAAC	ref_3143_fdr	77	45	77	68	34	58	50	55	38	63
GTTGGGTCGCTGCTTC	ref_3143_fdr	15	14	15	17	9	24	17	26	17	25
AGGCATGGTAGTGTGC	ref_3143_fdr	155	109	170	145	81	121	84	112	100	114
TGTGTATCCCCCCCGT	ref_3143_fdr	21	19	25	21	26	15	26	37	16	23
ACCACTTATGCCCAGC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CATATGCTCGCTTCCT	ref_3143_fdr	284	308	348	290	286	271	303	255	304	242
CCTGCTCCCTCTCCGA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTACTCTTTGTCCAAC	ref_3143_fdr	94	87	116	115	103	99	67	98	68	82
AGCGGCGCTTTGTTCG	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCTATGTGGTTAC	ref_3143_fdr	47	39	39	40	55	38	39	30	48	46
CTTTTGCCGAGACTTA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTCTCATGATGA	ref_3143_fdr	36	14	38	23	17	26	15	15	30	29
TTTGTCCACCCGCGGA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CAATCCTCGTCGAAGA	ref_3143_fdr	83	76	95	73	85	75	85	66	78	68
TTGTTAGTGCGCGTTT	ref_3143_fdr	27	11	20	18	17	26	18	24	28	20
CGCTTTGTCAATTCAT	ref_3143_fdr	142	61	136	113	55	113	48	98	64	89
TGAATCCCTGCAGCTG	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCGCAAAACTATCGAC	ref_3143_fdr	48	37	78	69	34	63	36	65	46	53
AATCCTGGTCACAGCA	ref_3143_fdr	11	5	14	15	6	12	11	9	5	6
TGGTGCCTCTACGAAC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
AAATCTAATGCTTGGA	ref_3143_fdr	110	82	123	123	81	109	100	115	85	112
TTTGGCGCAAGCGTTG	ref_3143_fdr	51	27	60	70	33	45	40	46	42	53
GGCTATTGTAGCTGGT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCGTAAATCTCTTCCT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGCCTAGCTTTAG	ref_3143_fdr	6	3	13	7	8	5	10	5	7	9
GTGTCCAAATACCACC	ref_3143_fdr	24	20	35	41	15	23	25	25	34	24
AGCCCGTAGGTCTCTA	ref_3143_fdr	17	20	32	25	21	20	15	19	19	24
TATCCGTCCCAATCAG	ref_3143_fdr	0	2	4	6	3	8	4	3	5	2
TGCCTTCCTACAGTTG	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCGGGGACCTAGC	ref_3143_fdr	41	82	57	40	76	25	66	36	88	47
CCTTTGTCATATCCCA	ref_3143_fdr	314	221	358	309	232	271	242	273	255	240
GTGTCAGTAGTTGCTC	ref_3143_fdr	59	54	90	70	65	73	56	74	52	52
ATAATGTGTTTCCAGT	ref_3143_fdr	64	42	83	81	50	58	47	50	45	60
TAGATTCATTGCTGTA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GGGGATTAGACTATAT	ref_3143_fdr	38	29	36	32	28	29	30	20	20	24
GGCAGCTTACAAGGCC	ref_3143_fdr	32	20	30	35	35	30	26	26	15	25
GTACCAGGAAGTTATC	ref_3143_fdr	61	62	50	76	39	60	47	56	41	52
GGCACTGCGTCTTGTT	ref_3143_fdr	32	37	46	37	12	24	26	30	26	27
ACTGTCCGCGGCAGGG	ref_3143_fdr	93	58	114	91	61	80	52	90	65	93
ACTTAGCTGGTCCCGC	ref_3143_fdr	52	42	71	53	46	68	46	51	48	50
ACATCTGACAGACTAA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTATTGTGTGTGGGTC	ref_3143_fdr	40	33	43	32	37	51	30	28	28	41
GTCGCAAGTCCACCGA	ref_3143_fdr	19	15	29	28	20	16	20	25	19	18
GAATATATAAATAATT	ref_3143_fdr	15	8	7	20	14	20	15	9	21	11
TATTTAGCATGCTTAC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CGATAGCCTTGCGGTC	ref_3143_fdr	15	7	11	15	10	15	5	12	13	8
TACCTTGCTGAGAAAC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
ACATCAGGTTTACTCA	ref_3143_fdr	9	5	11	9	10	8	7	5	5	10
AGTTTTGGATTTGACC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GGGACTTTCTACTTTG	ref_3143_fdr	140	70	150	147	100	131	69	133	77	100
TCAGATATCTTTCGTA	ref_3143_fdr	76	55	88	81	52	92	73	85	70	75
GCTTCAACCTCCTTCT	ref_3143_fdr	82	53	102	95	55	61	69	66	81	80
CAGGGTACCGTGTAGA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGACTCTTTTCTG	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
ATGCCAAATCTCAGCT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTCCTACTCCTA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
AATAATGTACATTTCT	ref_3143_fdr	67	22	88	88	27	61	35	59	41	75
TTTACAACACCACCTG	ref_3143_fdr	22	18	22	22	23	34	15	28	18	22
CGTTCTTATGGAGTGG	ref_3143_fdr	12	16	29	23	10	17	16	18	13	17
GATCCATAACACGATA	ref_3143_fdr	35	20	39	32	19	33	32	32	20	35
TTAAGTCAAGCATCTC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
ACGAGTCTCCCAGCCT	ref_3143_fdr	41	28	60	40	34	37	32	35	34	33
CGCTGGGTCATAATGC	ref_3143_fdr	16	22	38	32	23	22	17	34	18	28
GAGATGATTAATGTCA	ref_3143_fdr	45	48	58	57	29	56	44	45	40	51
TGGGCATTGAGCTGCC	ref_3143_fdr	81	54	97	87	59	87	67	85	66	117
GTTCCCGTGGGCATCT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTCTAATTTTGCT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GGTACACTTGCCACAC	ref_3143_fdr	2	2	1	0	6	3	2	3	4	6
GCATATTAAGTTTCAA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCGGCTTCCGTCG	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTGGTACGATAGG	ref_3143_fdr	47	51	66	58	40	58	43	32	43	56
GGACACTCTTCCTAGG	ref_3143_fdr	63	59	60	66	72	74	69	63	52	60
ATATATCAGACCCCCA	ref_3143_fdr	11	8	13	13	12	11	12	11	5	11
AATTTGTCCCTATAGT	ref_3143_fdr	115	70	133	116	94	93	107	119	102	105
CGAAGCTATGTGTGTA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCTGACTGTTCTG	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGTCAATCTCAGT	ref_3143_fdr	10	8	27	8	4	15	3	10	4	9
GAACTTACAGTAAGCT	ref_3143_fdr	29	31	54	45	28	38	32	31	22	36
CAGTTCTGATCTCCTA	ref_3143_fdr	58	30	50	47	32	38	34	47	45	40
GTCAGTTTACTTATAG	ref_3143_fdr	8	14	18	20	10	10	8	10	11	10
CGATTATGTGTGGTTC	ref_3143_fdr	50	31	53	55	30	38	37	55	40	50
AGGAATGGCATCTTAT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTGGATGATTTATTGT	ref_3143_fdr	68	56	108	87	56	84	54	91	56	67
GGGCATTTTCCACCTG	ref_3143_fdr	57	27	67	49	37	46	33	54	37	56
GTGAATACTTGTCAGT	ref_3143_fdr	286	194	339	267	199	240	176	239	199	227
TATCCGTGTGGAATCT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CCTCAGCCCCGGATAT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTCGTGTCTACG	ref_3143_fdr	19	20	18	25	22	25	18	15	22	17
TTAGTCCTTGATTAGC	ref_3143_fdr	2	0	0	3	3	1	2	0	2	1
CCCTGCTCAAGGCCAT	ref_3143_fdr	39	12	35	24	17	33	20	25	19	25
CCGAGCTCAGGTCTCA	ref_3143_fdr	23	22	24	29	15	21	15	14	18	18
TGGCACGTTCAGTCTC	ref_3143_fdr	4	1	10	4	3	6	9	5	4	2
AGCTGCCGCGACGCCC	ref_3143_fdr	72	40	79	79	42	58	62	52	60	59
AATTTACACCAATTAC	ref_3143_fdr	10	13	10	14	11	13	6	18	15	9
TTGCTCGTATATGCTT	ref_3143_fdr	5	4	6	4	5	10	4	3	8	3
TTGCAATTAGTCGGTA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
CAAGACAGTCTAACGA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCTGTCTATCCTA	ref_3143_fdr	205	151	228	220	137	180	159	175	143	154
CCCTGTCCCCGGTGAT	ref_3143_fdr	24	18	39	40	34	42	23	34	28	39
CAGAGTATCCCGTGTA	ref_3143_fdr	31	23	40	46	20	37	29	36	21	29
CTCCCAGGAGTTGTTA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
AATATTCTCTATGCGT	ref_3143_fdr	53	37	75	57	43	67	24	45	36	39
CCTGAACTCCCTAGTT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
ACACCTCATGGATGCT	ref_3143_fdr	140	120	202	172	103	158	113	145	109	150
CGTAGGTCGCTAGAGA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GGAATTCTGAGGCGGT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCAACCCTGACAGAAC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TGTCACAGTATTCCCG	ref_3143_fdr	11	9	16	6	3	6	9	5	4	4
TCATAGACAGGCAGCG	ref_3143_fdr	16	6	15	10	12	8	9	12	3	13
TAAGTGGAAAATTACG	ref_3143_fdr	7	3	8	5	1	6	8	8	3	3
CTTTGCCCGGACTCCG	ref_3143_fdr	8	20	19	16	17	11	16	23	17	12
ATGATGTGGTCGCCGG	ref_3143_fdr	30	26	45	51	29	37	30	42	23	41
GCTAATCACGTGAATT	ref_3143_fdr	217	139	253	232	133	213	144	194	139	206
CCTGGGTGCACGCCGC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
GCAGGCAATTGAGGGT	ref_3143_fdr	150	110	196	154	103	157	112	160	102	140
GAACCTGCACTCTGAC	ref_3143_fdr	36	18	36	29	17	38	35	32	27	19
AAGATCCATTAATTTA	ref_3143_fdr	39	28	47	64	33	43	30	41	38	38
GAATGTTAGTGCTTGT	ref_3143_fdr	33	21	28	20	22	31	15	26	22	30
TTATTTCCTTTCTGTC	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
ATGGGGTTTAAGGTAT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TCACGGTTGACTTTGG	ref_3143_fdr	20	28	38	20	20	21	24	21	35	31
GTTGGAGTTTTCGAAA	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TATCTCCCCTCCTTCT	ref_3143_fdr	0	0	0	0	0	0	0	0	0	0
TTATTTTTATAACTTT	ref_3143_fdr	45	32	67	51	26	65	31	48	28	51
TCAGTCGGTCATCTAT	ref_3143_fdr	4	6	5	3	13	7	1	6	4	8
GGAGCTGGATACAGGA	alt_5885_new	177	30	214	213	30	165	37	173	46	180
TCGCCCGTCTTTTACC	alt_5885_new	32	5	28	21	2	16	5	22	4	22
TACTTCTACAAGTTAA	alt_5885_new	776	92	931	798	91	695	112	726	93	644
TCGTTACTAGGCCTGC	alt_5885_new	502	74	589	519	66	500	59	473	80	446
CCCGCTCCCAAACCTT	alt_5885_new	445	88	676	621	78	551	88	572	80	523
CCGGTTACAGCGCTGT	alt_5885_new	280	58	344	293	72	251	58	258	53	276
CCGTAACACGCATCGG	alt_5885_new	663	89	865	800	112	667	111	644	113	578
GCCGCTAAACGCACGG	alt_5885_new	71	19	114	123	17	86	17	71	25	64
CTCTATACATCACTCG	alt_5885_new	535	61	559	573	78	443	83	578	69	440
TTAAGAAGCCTCGATG	alt_5885_new	0	0	0	0	0	0	0	0	0	0
CCTGGCGCGTTTGCGC	alt_5885_new	69	5	102	64	9	71	8	44	9	40
CTCGCCCCAGATCCTC	alt_5885_new	181	15	232	228	24	180	21	181	25	183
GTCTATAGATACAAGC	alt_5885_new	249	49	318	279	42	266	37	268	35	227
CCTTTAGGGTTTGGTA	alt_5885_new	304	33	307	249	33	244	39	241	40	214
ATTCACCTCAATGAAG	alt_5885_new	334	51	385	331	38	318	48	304	49	295
ACTGACCTCCAATGCC	alt_5885_new	185	45	196	136	45	134	44	159	42	140
TATGTCAAGAGGGATT	alt_5885_new	0	0	0	0	0	0	0	0	0	0
TCCACTTCCCTTGCTC	alt_5885_new	95	9	124	125	9	98	29	94	12	79
TCGTCCCTGGTCCCCC	alt_5885_new	508	74	595	537	71	440	73	429	59	408
GTAAATGCAGTAGCGC	alt_5885_new	116	11	157	125	13	114	15	108	20	104
CAGTCTACCCATCCTG	alt_5885_new	215	38	245	202	40	182	42	177	42	191
CACAGAGTCCCCGGAA	alt_5885_new	0	0	0	0	0	0	0	0	0	0
GTCCTTTTCATGGGTG	alt_5885_new	0	0	0	0	0	0	0	0	0	0
CTCAACCGTCTAAGCG	alt_5885_new	0	0	0	0	0	0	0	0	0	0
ACATATAGGTGAACCG	alt_5885_new	413	59	488	445	62	376	70	397	55	329
TTCTCCGCAGCCCTTA	alt_5885_new	111	14	122	115	11	118	26	116	19	105
CAGCGAGAGTGAGAGC	alt_5885_new	0	0	0	0	0	0	0	0	0	0
GTTATTCCATTTGTAA	alt_5885_new	4735	655	5790	5074	690	4476	717	4513	682	4071
CGGAATTTGTGGCGCA	alt_5885_new	0	0	0	0	0	0	0	0	0	0
AGTCTCCGATTTTTTC	alt_5885_new	428	55	415	395	55	381	63	389	56	307
ATCATTCGTATCGCGT	alt_5885_new	947	98	1151	1030	113	912	163	809	135	833
GCATCACTTTTGTACG	alt_5885_new	657	79	795	700	97	634	99	614	109	593
AATCATCCCGGGTCCA	alt_5885_new	0	0	0	0	0	0	0	0	0	0
AGATCGTGGGTGGTCT	alt_5885_new	24	1	18	23	2	16	3	19	0	13
TTATTTTGTACTGGCT	alt_5885_new	62	8	59	82	8	64	15	58	8	50
GTATAACGCGCTCTGT	alt_5885_new	0	0	0	0	0	0	0	0	0	0
CCTGTGCCCTGCCAAG	alt_5885_new	1200	185	1392	1248	167	1104	180	1062	186	1001
ATACGACCAGGGATGT	alt_5885_new	188	28	268	204	29	156	32	193	28	150
ATTATGTCAGCGTTAT	alt_5885_new	0	0	0	0	0	0	0	0	0	0
TAGGAAAATTGCGACC	alt_5885_new	92	8	128	90	13	98	12	80	12	84
GAAACGGTAGTATATC	alt_5885_new	595	74	710	643	72	519	69	539	79	477
GCCATCACGTGGATCC	alt_5885_new	1354	238	1681	1534	232	1245	224	1333	238	1241
ATTACGCTATGCTAGT	alt_5885_new	294	30	385	300	37	270	53	267	36	257
TTAGGTATCGGGGTTG	alt_5885_new	1110	184	1382	1252	190	1163	170	1162	179	943
GGCGCAAACAACGTGT	alt_5885_new	288	32	315	291	42	272	48	279	41	229
CTCACGAGGAGGGCAC	ref_1454_RC	3	5	1	5	2	3	0	0	4	1
TGGAATGACAACAAAT	ref_1454_RC	9	7	11	9	11	6	15	3	15	7
TAGAATGGAGGGTCCG	ref_1454_RC	54	60	71	39	52	44	59	48	45	54
TTTTTATACGTGATAT	ref_1454_RC	62	105	62	73	106	52	97	60	111	46
TTTGGGGTTGCGCAGC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
GTGGGTCCAATACGAT	ref_1454_RC	7	14	14	12	10	7	22	5	15	10
CGGGTTACAGTATGCT	ref_1454_RC	9	9	6	4	6	9	8	10	14	5
TCGCGTTGTTTTTAAG	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CGTATGGGATCGATTC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CCACTGTGACTACACG	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CTGACAATCCTTTGCG	ref_1454_RC	4	4	0	5	4	0	5	0	2	4
AGGCCAATTTCGTTGT	ref_1454_RC	7	20	12	11	23	9	18	16	22	6
TCGTTCTCACGTTCAC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CTCCTACGGAGTCCGG	ref_1454_RC	12	12	9	10	18	7	8	9	17	10
CTGGAGCTTTTATTGG	ref_1454_RC	69	107	89	92	99	93	103	80	106	60
CTAATATAAGGAGCCC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
GTTTGCATGAATTTTC	ref_1454_RC	71	63	79	63	85	68	67	55	79	53
ACGCCAGTTCATATTA	ref_1454_RC	46	74	63	45	65	37	61	44	79	43
TCCTTTGTTCAGTAAC	ref_1454_RC	6	7	1	2	5	3	1	2	3	4
CGTAACCGAAAGACGC	ref_1454_RC	29	25	21	31	24	21	37	30	37	25
GGCTACGGTTACCAGT	ref_1454_RC	96	135	112	99	123	97	130	77	142	96
CGGTAACCTTCAAGAG	ref_1454_RC	55	63	72	69	79	88	79	69	85	52
CTTCGTCGTTATAACG	ref_1454_RC	8	25	12	14	10	13	25	5	28	11
CCTGATTCGTGCAGAG	ref_1454_RC	7	16	15	14	8	9	17	3	15	12
AAAGAAGAGCTACGAA	ref_1454_RC	65	62	53	48	56	52	62	44	73	42
ATTGCCCCAAACATGC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
GCCGCACCCAACGTTG	ref_1454_RC	7	8	7	7	3	7	8	10	4	6
CAAGGCTACTCGAAAC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
GATATAGTACTTTCCC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
TAATTAAGATTTGCAC	ref_1454_RC	57	72	85	44	53	63	54	45	59	43
TGTTCACATAGCATGC	ref_1454_RC	24	22	27	21	28	16	20	23	25	18
CAATTTGCTCTATTGA	ref_1454_RC	11	17	21	14	17	12	12	19	17	16
GGCTAGCCGAGCTATC	ref_1454_RC	62	66	51	62	74	60	55	43	55	54
ACAGTTCCTCTTGGTT	ref_1454_RC	13	8	18	10	11	14	15	14	16	16
CTCTGAGCGACTAAGA	ref_1454_RC	17	27	22	15	36	21	22	11	24	19
CCCCAAAATGCCATGT	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
GTGTTACCCAAGCTGA	ref_1454_RC	16	20	21	22	23	18	21	13	23	17
GTCTCGACAACGGGAT	ref_1454_RC	23	27	24	17	35	24	19	23	23	20
TATAAACATTCTCCCC	ref_1454_RC	2	21	5	5	11	6	13	7	10	3
GTCTCAATTCTTCGTT	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CTTTCGCTAGTTCATT	ref_1454_RC	5	0	0	2	1	1	1	1	0	2
CTCGCGAGATTATGCC	ref_1454_RC	30	17	24	24	26	24	16	37	17	21
TATTAAAGTAAACTCG	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
AGCGCGGCCCTGCGCT	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
GGGAAACTTGTTATAT	ref_1454_RC	23	36	33	30	30	27	47	24	50	26
ATTGTCGACATGGATG	ref_1454_RC	11	9	12	22	21	24	27	17	24	12
GCACCTCGCCTTATAG	ref_1454_RC	19	33	26	24	32	25	27	22	28	25
AGGGAGGATAGCCTGC	ref_1454_RC	18	17	20	10	13	14	22	6	20	7
TAGGGGCATGCCTTCC	ref_1454_RC	50	64	62	56	62	40	57	41	60	49
GCCGGCTGTTCTTAGT	ref_1454_RC	3	5	4	2	8	4	11	9	6	1
CTAGTGTTCTCTGATG	ref_1454_RC	2	0	1	3	6	1	4	2	3	0
TGGGCTATCGGTATAC	ref_1454_RC	62	83	51	59	74	48	75	46	74	53
CCAGTGCAGGAGTTGT	ref_1454_RC	36	41	39	34	47	27	48	25	54	27
ACCTTCCTGCTTCAGT	ref_1454_RC	5	4	2	2	7	3	3	1	3	5
TCATTGGATATCTCAC	ref_1454_RC	4	5	4	2	6	2	9	3	3	5
TCCCCTCGGAATGCTG	ref_1454_RC	25	91	30	24	100	16	91	23	71	11
TCCGATTTTAGGCATC	ref_1454_RC	11	15	14	21	20	8	9	16	19	17
GTGTGAGATTGTGCAT	ref_1454_RC	101	135	90	85	118	90	148	78	134	72
GGGCTTAATCCTAAGA	ref_1454_RC	28	19	28	23	25	13	29	22	44	23
ACCCCTTCTACATTCT	ref_1454_RC	0	1	1	0	0	1	0	0	1	0
ATATGATGAGTATGTT	ref_1454_RC	3	5	7	11	4	4	11	7	3	6
GAACCGCCTCTCCATT	ref_1454_RC	9	6	4	4	9	3	6	4	5	6
CTAGTTTCACAATGAA	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CCGGTCGCGGTGTTTC	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
TACGGCCTCGGCCTGT	ref_1454_RC	36	80	42	37	55	32	73	39	62	22
TCAGTGCCGCTTCTAG	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CTGCCCGCCAGCTCAC	ref_1454_RC	10	10	16	16	16	10	8	10	16	7
ACTAATTCCCCGCTGA	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
CCTTTTGGTCATGAAA	ref_1454_RC	1	0	0	0	0	0	0	1	0	0
TATCATGTTAGAGTTG	ref_1454_RC	30	34	29	37	29	26	46	26	33	30
TGGCGTCTGTCATGAT	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
AACAGGAAGGTTTGTT	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
GGGGGTTTTGTGTCTA	ref_1454_RC	14	23	17	24	24	19	19	16	24	16
TCTGTAGTGCCGGCCG	ref_1454_RC	42	63	41	29	47	29	52	25	61	29
AGGTCCAATGAATAAG	ref_1454_RC	36	30	35	31	39	27	43	13	57	29
AGCCTCAAGCCTGCCA	ref_1454_RC	0	0	0	0	0	0	0	0	0	0
AGAACATCAGTGGACG	ref_1150_reverse	35	50	45	48	52	34	61	27	48	47
TAGCACAGTAGAGCTA	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGCTATCGTTTAA	ref_1150_reverse	0	1	1	1	1	0	1	0	3	1
CAATAGTTACCATTTA	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
CTGAAGAGGCGCAGAG	ref_1150_reverse	2	7	3	6	1	3	4	2	3	2
TGTAAAATTTATTCGC	ref_1150_reverse	17	19	21	11	18	24	23	11	28	15
CGTAACTAATATACGG	ref_1150_reverse	9	14	13	11	13	11	20	15	18	9
TCGCCTAATCGTTATT	ref_1150_reverse	13	35	20	16	29	17	36	26	33	20
GGTCTTCTAGCTCAGC	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTGAATCATACCT	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TCAGATTTTAAAGGTA	ref_1150_reverse	21	15	19	21	28	7	19	11	22	17
AGCTATGTGCTCATGG	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TTATATCTTCAGTCGT	ref_1150_reverse	12	7	9	4	5	3	9	10	11	4
AACCCGTCTACGCTCA	ref_1150_reverse	0	1	2	0	1	2	1	0	2	1
TTTTATCGGCAAACTC	ref_1150_reverse	4	6	2	1	5	5	5	5	7	3
ACGTGCGCTGGTGTCA	ref_1150_reverse	6	18	16	10	15	8	22	20	11	15
CTGTCTGGTTAGGTGC	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTTGTCATGTGGC	ref_1150_reverse	13	18	13	15	18	11	19	22	20	7
ATACAACCGCGCGTTG	ref_1150_reverse	3	3	4	2	6	2	5	1	5	2
AACTAACGACTTTAAT	ref_1150_reverse	7	8	2	7	9	4	8	10	6	7
ACCCCTAGAGGCCGGT	ref_1150_reverse	47	64	52	47	64	45	86	41	82	50
TCTCGTTAGTACTTCT	ref_1150_reverse	55	62	67	40	66	46	57	57	72	37
TTGTTTGATGGGAGGA	ref_1150_reverse	22	44	31	29	34	34	39	25	27	24
TTACTTTCTATTAGGC	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
GATCCTATCTTCCTAT	ref_1150_reverse	25	19	15	16	20	18	19	9	28	10
CTCGGGAAGGTGCAAG	ref_1150_reverse	9	24	12	18	18	6	18	11	12	8
TATTAACGTCTCTATG	ref_1150_reverse	22	25	12	12	27	22	18	18	27	17
CTATATCCCTTTAGTT	ref_1150_reverse	12	15	11	5	22	13	22	17	26	4
ACCGCTCCTGGTAAAC	ref_1150_reverse	4	7	3	1	5	1	6	4	7	4
TCAGTCAAAACCGCCA	ref_1150_reverse	17	18	14	16	22	18	21	5	17	8
ATATGACGGACACGTA	ref_1150_reverse	18	18	34	15	36	17	28	17	32	13
TGCTCACAGCTGTTTA	ref_1150_reverse	1	2	0	0	1	0	3	2	2	4
TAAACTAGGATTTCAA	ref_1150_reverse	34	50	39	43	68	28	61	27	74	28
CATTAGGAATCCGCGA	ref_1150_reverse	18	19	18	8	22	13	21	15	36	22
TTCTCTCCGTCTTTAC	ref_1150_reverse	31	73	55	39	86	28	77	37	70	35
CTGAATCCCTTGTTCG	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
CTATACTAAGCTAAGA	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
CTTTGCCTAACCGAAC	ref_1150_reverse	17	67	25	22	74	15	73	19	55	19
TTTTCCTTAAGTGTGA	ref_1150_reverse	48	50	41	55	66	28	70	27	48	34
TTTTCTGAGCCCTAGC	ref_1150_reverse	24	39	43	26	39	27	44	27	42	37
GCTGGCCCATGAAAGT	ref_1150_reverse	45	76	49	47	63	35	70	39	65	48
GGCTTAATTTTTCAGA	ref_1150_reverse	2	2	2	6	6	1	0	0	4	4
CAGGCTCTTGTGCTGA	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAACTGTATTCTC	ref_1150_reverse	16	18	17	23	25	10	33	16	28	12
TTACTCGTCTGTTGTG	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
GGCTAGTTTCAAGTAA	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGCTGGTAAGATT	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCTCCTGCATTTC	ref_1150_reverse	6	6	9	7	8	5	5	7	11	2
ACGCGGAATTTCGCGT	ref_1150_reverse	11	18	15	18	13	9	17	17	16	6
CCCGCTTATGCTGATT	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCTCCTGCTTACT	ref_1150_reverse	7	23	8	13	6	9	19	15	13	10
TTTGTGCCCAGTTTCC	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGACGGTCACGCT	ref_1150_reverse	5	10	6	5	6	11	8	10	6	9
AACATCTACCAAGCCA	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TACATATACCTATTAC	ref_1150_reverse	20	45	28	22	54	25	40	19	50	29
CGTTCTACTCAGGATT	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
GATGAATTATGCCCCC	ref_1150_reverse	36	46	39	31	46	27	35	25	45	27
GGTTGCAGGCTACGAA	ref_1150_reverse	7	4	7	3	3	4	6	1	10	3
TCGGTTGGCAGTAAAA	ref_1150_reverse	63	91	95	81	105	67	116	59	111	66
GTCACAAGAGCGGGTA	ref_1150_reverse	2	7	13	6	14	6	19	3	6	6
CAGAGTACATTCGTGA	ref_1150_reverse	6	10	9	3	12	8	21	5	18	3
TTTTCTAATACCCATT	ref_1150_reverse	47	65	57	34	64	49	80	26	76	37
TGGTTTAATCACCCCT	ref_1150_reverse	51	91	64	64	63	54	94	38	98	54
TGTTCCAAACCTATAG	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
TACGCTATAACATTTG	ref_1150_reverse	37	49	37	32	64	35	48	25	57	32
ATTCAGGCATGGCTTG	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
CCATCCTAGCCGCAAA	ref_1150_reverse	0	0	0	0	0	0	0	0	0	0
CGACCTCACTGGTGCT	ref_1150_reverse	5	6	5	13	18	0	13	7	10	4
GTTGAAATCCTATCTA	ref_1150_reverse	22	24	28	13	32	14	42	12	23	14
TGAAGAATTACCGCCT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTACCTAGCGTTC	alt_3673_fdr	14	25	12	18	15	12	14	8	15	16
GGCGTTGAGAGGGGTG	alt_3673_fdr	18	23	25	23	22	18	19	19	22	13
ATGTTCGGTCTTGTTG	alt_3673_fdr	74	99	78	63	92	83	92	58	121	59
GGCACGGGATTATCTC	alt_3673_fdr	14	20	35	11	28	20	19	22	14	8
AATCCACAGCGATCGT	alt_3673_fdr	57	52	47	53	64	48	68	40	79	41
TTTAGGGCGCCCGGGG	alt_3673_fdr	28	36	57	22	40	24	30	39	41	24
CAAAACATGCACCGTC	alt_3673_fdr	40	29	51	40	54	30	43	41	44	36
TGTCCGCCCCAGCTTC	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGTACCTCGCACA	ref_3673_fdr	195	172	215	180	238	169	233	172	225	177
GCCGGAGACGGTTATA	alt_3673_fdr	55	75	80	65	60	45	47	51	85	53
GACTGACCATATCTGG	alt_3673_fdr	39	65	39	35	59	37	60	42	45	26
TGGTCTGTTGTGCCTA	alt_3673_fdr	33	43	31	27	54	24	56	27	60	22
TTCACTGGATCCAGTT	alt_3673_fdr	39	35	57	32	32	37	23	37	48	25
CCATGCCCCCAGAACC	alt_3673_fdr	83	87	91	90	106	94	101	75	121	94
CGTCTAGCCTAGAGAT	alt_3673_fdr	13	12	16	20	13	12	24	15	21	10
TTCTACACAGTTAACT	alt_3673_fdr	31	25	19	23	32	21	36	26	42	16
ATACTCGTATCCTGTC	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTGTCAGTGCAG	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
CATTTACTCCGTGCTA	alt_3673_fdr	7	21	21	20	18	11	19	13	18	14
TGCTAGCACATTAATC	alt_3673_fdr	14	4	10	2	6	4	4	1	6	4
TCAGTGGTTGTGACTC	alt_3673_fdr	60	70	63	44	60	51	64	61	59	34
CCGTTCCTGGGCACTA	alt_3673_fdr	5	3	5	3	4	1	10	5	10	3
TGGTTCCGATACCGAG	alt_3673_fdr	5	6	9	12	4	7	13	13	11	13
TTTCGTTTAATGTTTC	alt_3673_fdr	28	25	28	18	16	12	25	26	24	17
GCATGTTGACTGGAAG	alt_3673_fdr	3	5	3	6	9	1	8	2	7	3
TGCTCCACATTGCGTA	alt_3673_fdr	25	17	40	23	28	31	30	19	43	25
AAGAGTGATGGCGTGA	alt_3673_fdr	4	3	8	8	5	5	4	2	4	7
GTGTCGGGCTTAGCAT	alt_3673_fdr	58	77	92	72	84	55	61	62	79	48
CATAAGCTTTCCCTGA	alt_3673_fdr	39	30	45	30	34	29	39	48	28	40
ACCCCAGCATTCACGG	alt_3673_fdr	5	10	11	4	9	7	3	7	4	7
TCACGGCATCACGTTC	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
ACAACTGAGGCATGCA	alt_3673_fdr	11	13	15	19	15	18	10	12	21	10
GGTGACCGTTTTCCAT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
AGTGGACCTTAGTTAC	alt_3673_fdr	7	10	11	9	7	6	8	13	15	6
GTGATCACTTTTTCTG	alt_3673_fdr	25	53	54	49	40	45	43	32	49	31
CAGGTGTGAACAATTG	alt_3673_fdr	3	3	3	3	2	0	2	1	2	1
TGGTCTAACAGCTTTA	alt_3673_fdr	26	39	29	30	20	23	24	17	51	21
CATCAGCTACAGTCGT	alt_3673_fdr	48	35	49	35	75	29	55	41	63	36
CAGTACGCGACTAGCT	ref_3673_fdr	11	26	13	7	24	6	13	6	20	5
TTTATGTTTCATTATA	alt_3673_fdr	74	94	95	79	86	70	108	76	92	64
TGCCATCATTATTAAG	alt_3673_fdr	44	51	46	41	37	33	47	42	49	36
ATCTAGTCGGCCATCG	alt_3673_fdr	44	44	53	33	47	39	34	33	47	34
TGGTCTTCGGCCATGC	alt_3673_fdr	21	27	21	20	19	9	17	20	29	22
CTGCGGCCGGACAGTG	alt_3673_fdr	30	74	65	60	67	61	61	30	44	49
TGCCCGCTCTTATGCT	alt_3673_fdr	40	82	61	55	80	42	79	58	82	40
TCTCAATGATTGAGTT	alt_3673_fdr	11	12	21	7	22	11	26	7	15	10
ATGATGGAAATGTTAG	alt_3673_fdr	34	44	30	28	36	29	30	30	23	24
CCTGCCGGGATGCCTT	alt_3673_fdr	35	45	28	21	55	15	46	17	40	22
GATTCTCAGCGTCTTT	alt_3673_fdr	11	11	11	12	12	10	10	10	13	6
GTTCCAGTTCCTCATG	alt_3673_fdr	29	52	23	26	34	18	46	29	53	31
CAGTCTTGTACGTATT	alt_3673_fdr	10	20	13	6	6	3	21	10	12	7
CCAAAATGGACTAAGT	alt_3673_fdr	27	41	34	26	56	22	46	26	44	26
GATGCGCTGACTGAAG	ref_3673_fdr	32	26	31	27	32	25	34	16	31	27
CTGTTGGTAGAACTCT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGCGCCTCGCTGT	alt_3673_fdr	1	0	1	1	1	1	3	4	0	1
TCCCCGACATGACGTA	alt_3673_fdr	4	2	1	1	2	2	8	1	3	0
CAGCTGCCTTAACCTT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
CGTCATTAGTTGATCG	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGGGTGGCCGAGC	alt_3673_fdr	29	28	25	30	24	25	31	19	29	26
CTGTACCAGCGGGACT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCCGGTTCAATTA	alt_3673_fdr	19	23	21	31	29	12	37	18	40	28
AATGTCTTAACTCAAC	alt_3673_fdr	10	23	23	23	21	16	29	9	21	11
TTCTCCTCAGCTGATC	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
AATCTACCACCCCTAG	ref_3673_fdr	78	48	105	73	72	75	72	83	73	88
TATTATTGATTCCGCT	alt_3673_fdr	6	13	10	14	11	13	11	10	14	3
TGTAATTAACTGCATT	ref_3673_fdr	43	48	41	46	50	34	42	38	59	24
TTCTCAGATCCTTGCC	alt_3673_fdr	2	3	2	8	10	3	3	1	2	4
ATAACGTGCGGCCAGT	alt_3673_fdr	4	14	3	0	10	6	10	11	9	17
AATGGGCGTGTCGCAA	alt_3673_fdr	54	86	83	68	112	66	119	65	101	63
GGGATTCACGCCGTCT	alt_3673_fdr	19	13	17	17	26	28	24	27	19	22
CCGCTTATACCGTTGA	alt_3673_fdr	196	327	219	207	323	175	317	165	366	166
CTCCTGGAAGATACCG	alt_3673_fdr	10	21	13	21	23	17	15	18	18	10
CCTAGAAATTGTGTCG	alt_3673_fdr	109	165	138	104	162	112	146	114	169	97
GAAGTCTAATCGTGTT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
TAGCATTCCGTGTTAT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
ATTTTTTCCGGCACAG	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTCCCGTTCTTCG	alt_3673_fdr	19	15	15	15	20	18	25	10	26	14
TCTTAGCAACGTCGTT	alt_3673_fdr	50	49	49	55	64	38	54	44	58	31
ATCAGGTATCTTTGAC	alt_3673_fdr	61	56	84	48	90	51	53	43	54	54
GTTAGGTAGTGCGCGC	ref_3673_fdr	2	4	1	3	4	2	4	1	1	1
TTGGTGTTTAAGGACT	alt_3673_fdr	12	9	16	9	18	15	11	12	4	6
CTGGGGCCCTTACGAA	alt_3673_fdr	120	104	153	142	141	104	133	118	142	114
GCTTGTCATTGCAAGG	alt_3673_fdr	32	42	41	41	37	21	47	30	31	27
TCAGAACTGGCTTTAT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
AGATAACGCTGGAAAG	ref_3673_fdr	17	13	19	11	20	25	30	19	22	22
CATAAGGCGCTTCTTG	alt_3673_fdr	0	4	3	4	6	6	3	3	5	1
GCTCCTTCTATGTCCC	alt_3673_fdr	16	37	14	22	48	18	56	21	46	14
CAACCGATATTCACTA	alt_3673_fdr	15	16	10	11	15	17	21	7	12	7
TTCCTTACGTCCATTG	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
TTATGAGTCAGTGCTC	alt_3673_fdr	92	116	110	90	117	82	118	73	96	93
AGTAGATTCAGTCATT	alt_3673_fdr	54	45	62	50	63	49	59	38	80	43
ATCCGCCGAAATACAG	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
GATGTCCGGCGTTTTA	alt_3673_fdr	14	16	23	10	15	8	13	10	16	9
ATCCTGCTAACCTCCT	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCCATCGTATCCA	alt_3673_fdr	7	16	5	9	15	7	18	7	19	1
ACCTGTGCCTGGTTGG	alt_3673_fdr	3	4	3	4	4	1	5	3	5	1
GTGGGAATAAGTCATG	alt_3673_fdr	13	11	11	24	13	12	17	9	17	13
CTCCTTTCCCTGACCC	alt_3673_fdr	7	6	11	15	13	12	7	4	16	6
GAGTACAATTCTCACA	alt_3673_fdr	32	25	22	22	23	28	23	19	27	19
TGACCTGGTCTCGGTT	alt_3673_fdr	62	67	69	58	67	50	62	54	56	49
ATCTTTTTAAATCATA	ref_3673_fdr	62	46	96	62	43	62	42	61	63	42
TAGTCAGCTAAGCAAA	alt_3673_fdr	15	27	38	25	31	19	29	24	35	17
TTTCCTGGTCGACTCT	alt_3673_fdr	37	38	43	32	54	42	51	39	73	37
TGGACCTTCGTATGTC	alt_3673_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTGCACACACGCA	alt_3673_fdr	27	30	35	18	27	18	19	25	28	15
GTCCACAAGCAGGCTC	ref_1834_RC	67	55	68	85	35	48	60	51	58	53
GCGTTTAACGTCAGAA	ref_1834_RC	9	14	7	10	10	4	4	0	8	5
TAGTGTGTTCTTGGTG	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
AAGCGCTCTAGTAGAG	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TTTTATTAATTGCCCT	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTATGGAATACA	ref_1834_RC	15	22	22	19	29	15	19	19	18	20
TACGGTGAATGAGGAT	ref_1834_RC	7	4	11	7	4	5	9	5	3	6
GTGTTGAATTCCCAGA	ref_1834_RC	11	2	8	11	1	5	4	7	2	13
GGCTACTTCACCCTCT	ref_1834_RC	108	86	139	125	82	103	80	124	85	109
CCACCGCTGTCCGTTG	ref_1834_RC	14	6	17	14	8	3	21	7	21	4
GCTATCTCGGGAGTTA	ref_1834_RC	99	66	136	91	69	95	99	100	84	93
AAGGGACGAATGCCTC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TTTCAACTGGGGTTTT	ref_1834_RC	33	13	15	13	6	11	11	15	16	16
CATCCCTGTAATGAGA	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
AACACATTATCGGATT	ref_1834_RC	52	45	41	49	29	40	43	40	43	38
TCGTAGATGCTAGTTT	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TCCAATTTCTTCATTT	ref_1834_RC	75	48	81	76	41	72	46	72	60	56
TAGATTGTCCGGAGCG	alt_1834_RC	26	30	38	21	14	29	32	21	35	29
TAATCAGCGCATTTTC	ref_1834_RC	154	141	153	150	130	130	132	97	120	123
ATCATGGATAGCCCTT	ref_1834_RC	137	140	187	143	127	120	128	129	142	133
CCGAGCGAGGTGCTTT	ref_1834_RC	25	31	38	48	28	35	23	38	42	22
TTATACATTGCACTTT	ref_1834_RC	96	84	103	103	89	92	95	104	125	98
TTCAGGACCGAAGCGA	ref_1834_RC	3	5	4	5	9	4	3	5	5	4
GGCGTAATCTATTTTT	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TTTCGTTACTATCCAG	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TCACCGTTCACAGATC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TGCTGTATGAGCGGCG	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TTCCTAGTGTCCACAT	ref_1834_RC	1	1	0	1	0	0	0	1	1	0
TTAGCGTCTACTCAGA	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
ATGCGTCTTTAGCGTT	ref_1834_RC	86	76	83	86	79	69	77	55	103	67
TTATCGTCCAGATCAG	ref_1834_RC	64	37	50	52	45	47	47	44	56	39
CCCGTGCGGTCCGCAA	ref_1834_RC	110	93	152	123	106	138	88	111	128	99
ACTACTCCAGCCCACG	ref_1834_RC	7	14	12	9	5	4	20	4	11	4
GGGGGCCCTCTGCTGA	ref_1834_RC	2	1	0	2	4	1	0	1	3	0
ACCCAGGTCAGCTGTA	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
ATGCGTGCCCGACTGC	ref_1834_RC	144	131	231	195	133	178	145	188	152	134
TAACCAAACCTGCGCG	ref_1834_RC	72	72	82	93	75	83	73	79	99	72
GTATAAAACGCATGGG	ref_1834_RC	110	96	173	163	99	126	92	151	106	121
TCTTCTATAACTGGAC	ref_1834_RC	22	23	31	14	34	22	26	26	25	24
ACAGTGATTCTGGTCA	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
GAGCTAAGTATTCGAT	ref_1834_RC	55	35	77	56	38	63	47	55	52	40
TTCCGAATCATGCCAG	ref_1834_RC	17	7	12	12	14	8	9	9	12	6
TACGTTTTAGTCTCGT	ref_1834_RC	134	129	155	136	98	136	143	116	126	136
TTACCCAGGTTTATCG	ref_1834_RC	11	7	15	8	3	7	12	11	13	10
CCTGTTTGGTTAGTGG	ref_1834_RC	71	62	100	74	81	82	86	55	88	74
GGCCTAGTAACCTCAT	ref_1834_RC	103	83	128	104	90	96	88	121	83	103
CACTATTCTCCATACG	ref_1834_RC	93	88	86	85	80	66	88	85	65	59
GGTTTTCCTTTTTATG	ref_1834_RC	45	56	73	64	64	53	62	47	58	58
TTACCGCGCGTTGCGA	ref_1834_RC	9	11	8	9	11	11	5	4	11	6
GCTTTAATGACCGCCT	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
CATAGCCCTTTTGGTT	ref_1834_RC	74	71	111	98	74	81	80	105	104	97
CACGGTCCCTGTTAAA	ref_1834_RC	46	55	38	45	52	32	51	49	40	45
TCCCGATAGGTTGATA	ref_1834_RC	62	64	72	70	73	63	44	66	62	41
TTGAACATGAAATACC	ref_1834_RC	53	52	48	60	49	44	45	33	60	55
ATGTGGGCCTTCTGGA	ref_1834_RC	78	54	69	79	56	79	75	86	82	78
TGTCTAACGACCCCCC	ref_1834_RC	48	57	68	84	51	62	62	54	74	49
CTTGCTAACAAGTCAG	ref_1834_RC	147	106	131	122	97	120	97	107	129	126
TATTGCTGACGCACAA	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
CCGGTAATGTACGCAC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
ATGTTCCTTCGGATCA	ref_1834_RC	107	71	101	97	75	83	67	84	90	77
TTTGTAACGTCCTCAT	ref_1834_RC	48	38	64	53	35	50	48	38	33	41
CGTGTCTATCAAGTTC	ref_1834_RC	34	25	49	30	28	38	32	35	39	43
CGGAGTACACACCTAA	ref_1834_RC	17	21	25	20	31	18	17	19	30	11
GTGTTTGCCCCCCGTT	ref_1834_RC	82	56	84	67	59	65	72	73	59	63
GGTATACCTCTTCCGC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TGCTTAAGTGCCCGAT	ref_1834_RC	14	26	32	19	16	19	16	21	34	18
CCTTATATAGCACTAT	ref_1834_RC	13	23	25	29	24	19	24	24	32	20
TAGGGTCTTCTACAGA	ref_1834_RC	19	13	12	21	5	12	14	9	11	17
ACCCCCCCGTTATCTG	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
CCCCTTTTTATTGCTC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
GCGCTTATTCATGCCC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
AGTGTGTACGTTCTCC	ref_1834_RC	96	85	144	112	76	108	78	82	84	82
GGTCCGAATACCTCCC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TCTGAGTGCACTGGAG	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
CCCAATTAGTTGATTC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
GTGGTGCATCTCACTA	ref_1834_RC	53	63	73	49	45	60	67	54	63	41
CAGAAACACCTGTTAC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
TAATCTGTTGCCTTTC	ref_1834_RC	9	2	13	3	11	9	8	7	17	10
GTACAACGATGGGACA	ref_1834_RC	30	23	31	31	28	26	31	28	20	25
TTGGTGTAAATTACAA	ref_1834_RC	20	15	30	22	19	13	25	13	15	18
ATATGTTTAGCGTCCC	ref_1834_RC	236	231	309	285	191	248	243	223	269	236
AAGTACCGTCCTTTTG	ref_1834_RC	65	64	92	78	62	66	64	65	77	76
CATCCCTGTAATGAGT	ref_1834_RC	159	163	201	187	253	164	199	175	227	157
CTCTGTGGGGGGTATA	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
CATCCGCGCAACCAAG	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
AATTGTGAATTACTCC	ref_1834_RC	65	51	58	57	40	42	42	40	49	26
ACAGCTAAATGTATGT	ref_1834_RC	51	44	60	71	49	60	45	46	65	57
AATGTATCCCGATCCC	ref_1834_RC	0	0	0	0	0	0	0	0	0	0
GAGGAGATGTTCTTTG	ref_5653_new	55	59	48	55	67	54	68	45	86	38
TTACCGTGCTGGGGCG	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CGTGCTCATCTATCAC	ref_5653_new	2	8	3	1	0	1	9	1	4	1
TGCAGTATCTCTCCTC	ref_5653_new	0	0	0	0	0	0	0	0	0	0
ACCGGGGCTTCTACTG	ref_5653_new	30	43	32	26	44	24	37	21	46	19
TGTGTACTGCAGTTTT	ref_5653_new	13	42	31	22	34	18	43	17	49	17
CAGGTACTTTGAGCGC	ref_5653_new	39	56	40	26	52	21	50	28	54	39
GGCGATGTATAGTTCT	ref_5653_new	12	12	10	9	5	7	9	7	11	9
AAATATATTATGATAC	ref_5653_new	39	59	59	49	56	47	85	43	83	33
GTTCATCAATGGAGCA	ref_5653_new	3	5	3	1	5	3	5	1	1	0
GCTCAAGCATACAGGC	ref_5653_new	2	2	3	4	4	2	5	1	5	2
AAATCTCTTTTTCAAT	ref_5653_new	6	3	2	3	3	3	1	1	3	4
ATCGCGCGGGGACATT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CACCCATCTCTCTCTT	ref_5653_new	3	6	0	1	5	1	8	4	7	1
CTTTTAGCCACAAGCA	ref_5653_new	9	16	13	10	9	5	11	9	15	4
TTTAAACTCCTTCCGT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
TATCCTGAGCATGTAG	ref_5653_new	32	39	34	35	47	30	52	24	46	32
TCACATCATGTCCTCG	ref_5653_new	0	0	0	0	0	0	0	0	0	0
TTCGCGGTGTGCTCAG	ref_5653_new	0	0	0	0	0	0	0	0	0	0
TTGCCAGGGTGTCTAG	ref_5653_new	28	42	45	41	42	34	44	34	41	23
TATGTGGCGGAGGTTA	ref_5653_new	4	7	10	6	12	6	9	7	11	4
TCACCGAGAACGAAGT	ref_5653_new	76	99	89	62	98	61	119	70	115	64
ATTACCCCCATGAAAC	ref_5653_new	30	38	27	29	46	22	34	31	44	17
TTAAGGGAACATCTGA	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CATACCCTGCGTAATA	ref_5653_new	0	0	0	0	0	0	0	0	0	0
GTGATCGACTCTTACT	ref_5653_new	43	79	47	30	43	37	84	23	80	45
GAAATTCACTTTGACG	ref_5653_new	44	59	66	36	68	41	54	27	75	34
CACGTACCCGCTGAAG	ref_5653_new	0	0	0	0	0	0	0	0	0	0
GCATGCTTAACTATAT	ref_5653_new	1	20	7	11	17	12	22	15	9	8
TTATCTTTGCTATCGG	ref_5653_new	8	23	15	9	21	10	15	7	18	14
GCCACATTGGATTCAC	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CCTTCGTTTTTTCCCC	ref_5653_new	5	24	11	13	16	7	22	5	17	3
CATCTGCTATGCCCTA	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CCTAGCTCCGGGCTCC	ref_5653_new	0	0	0	0	0	0	0	0	0	0
TGGTATCCGGTCTGCA	ref_5653_new	58	117	80	66	136	79	116	64	154	58
AGTGCTCATTCGAGAT	ref_5653_new	13	15	17	8	16	10	10	5	24	9
TTGTCTTCTTATCAAT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CGGTAAGACGCTTTGA	ref_5653_new	55	113	69	48	118	38	114	44	126	44
TCGTCTTCCATAGAGA	ref_5653_new	6	3	4	4	7	2	6	4	4	1
ATGACGTCTGAGCCCA	ref_5653_new	0	0	0	0	0	0	0	0	0	0
ATCATAACAGTGTTAC	ref_5653_new	1	10	11	5	20	11	14	4	7	10
TCCATGTTAATGCGGA	ref_5653_new	6	19	5	7	19	9	14	3	15	7
CTGAAGGTGCCCCGCC	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CTAATCGGACCAGTTA	ref_5653_new	21	38	27	20	37	20	31	15	28	17
ATATCTTTGCTATCGG	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CTTCGTTGGCAACCTG	ref_5653_new	5	6	3	2	7	4	4	1	9	4
CTTGGTTCGATAGGTA	ref_5653_new	11	10	9	3	11	3	17	6	8	3
TGTCCTGGTTTTTCTA	ref_5653_new	22	23	11	26	24	12	14	8	35	16
TTCAGTTAATCAAGAT	ref_5653_new	18	33	25	15	19	15	25	13	38	13
CGGGGCTCGAGCAGGC	ref_5653_new	18	28	30	27	25	16	24	24	27	28
GGAGGTATACGGGTGC	ref_5653_new	3	10	10	5	14	8	5	5	16	9
TCAGAAGTCCACACGA	ref_5653_new	2	4	3	2	4	7	1	4	9	1
TCATCCGAGCTTGTAT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
CCTTGGCCTCTTCCGT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
TGTTACCTTTTCGTAA	ref_5653_new	34	61	48	29	63	29	45	26	60	36
CTGATTTTTCGAGGTT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
ACATCTGATGGAACCT	ref_5653_new	16	26	15	10	19	20	10	16	25	12
CCGTTTTTACACCATG	ref_5653_new	8	20	12	19	28	19	25	13	29	13
GTTAAGGCCTATGCAC	ref_5653_new	6	6	4	3	4	3	5	7	7	2
TTAGGCATAAATCACC	ref_5653_new	21	18	27	26	30	17	30	12	23	11
ATGCCCGATAGCCGGC	ref_5653_new	0	0	0	0	0	0	0	0	0	0
GGCTGGCTTCGTGTTA	ref_5653_new	40	54	37	27	55	27	66	26	57	26
AAGTTCACGTGAACAG	ref_5653_new	15	13	7	11	7	13	9	6	14	4
CCACTTGATAGTCTAG	ref_5653_new	7	12	6	6	13	6	24	8	12	7
CGCACCTAATATCGAA	ref_5653_new	1	5	2	2	6	3	1	4	8	5
GACCACTTTATTTCTC	ref_5653_new	8	11	7	13	12	12	12	15	7	6
GGGTGTAAAGATCAAG	ref_5653_new	17	18	28	26	14	17	29	20	36	11
ATCTTACCGGTGTATC	ref_5653_new	5	19	11	5	24	6	16	5	18	8
CGATTTTTGTGGAGCC	ref_5653_new	22	23	20	13	11	21	22	10	26	13
CTATACTGACTTTAAT	ref_5653_new	33	40	38	28	51	34	40	32	55	16
GGAGTCCTTAGGTTTT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
AGATCCGACACTGACT	ref_5653_new	0	0	0	0	0	0	0	0	0	0
AAAGTACCACACGCAC	ref_5653_new	5	8	9	2	8	7	7	6	7	9
TATTTCCACTATTTTA	ref_5653_new	4	8	9	11	12	6	12	6	9	10
TGCGACAGATCATTAC	ref_5653_new	0	0	0	0	0	0	0	0	0	0
AGGTTTGCCGACTTTC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTGTTGATTAGCA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTGTTTTCGGGCA	alt_666_fdr	14	31	17	9	27	8	27	4	29	16
TTGACACTCCCTCCAC	alt_666_fdr	0	9	0	0	8	0	16	0	6	0
AGACGTCGTCAGTATC	alt_666_fdr	7	17	6	5	7	3	9	2	5	5
TCACTGACAACTTGTA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCAAGATTGTGCG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TTACCGGATCTACTAC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCCGTAGTCGAAC	alt_666_fdr	5	70	6	6	43	4	57	2	42	3
CTCGAATGATCGGTGG	alt_666_fdr	13	36	16	6	25	5	28	16	20	8
CAATTGGCTAGTGGGA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTAGGCTATGGAC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TCAACCATTAATTCCG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTAATTTCGTCT	alt_666_fdr	27	53	25	16	47	21	38	11	35	10
ACACTGCTCTTAAAGG	alt_666_fdr	11	13	12	11	18	9	18	7	11	4
CCTCTACTGGTAGTCC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTGTATTACTCACAGA	alt_666_fdr	6	9	9	6	7	6	8	6	6	5
ACGCGATTCGTTCGCT	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGCCCACCTAGGT	alt_666_fdr	10	3	5	7	10	3	13	5	3	5
GTGCGTTTCTTAGCTT	alt_666_fdr	3	10	8	4	7	8	12	3	6	3
ATATACACTACACCGT	alt_666_fdr	13	63	14	20	74	18	70	5	57	10
GACTGAGCATGAAAAG	alt_666_fdr	4	13	7	10	10	2	13	7	13	3
AAGCCCACGTAAACTC	alt_666_fdr	1	11	2	7	3	4	8	2	6	1
ATACCATTTTCCCCCT	alt_666_fdr	19	41	14	21	39	21	40	22	48	15
TATTCATACGATCGTC	alt_666_fdr	39	98	64	34	89	37	98	31	102	44
CGCGGAAGGTGTATGC	alt_666_fdr	12	12	10	4	26	12	14	6	16	6
TTTCATCCCTTTTAAA	alt_666_fdr	15	25	20	13	18	7	15	8	34	10
ATGGAACTTCGTGGAA	alt_666_fdr	4	9	4	1	10	2	5	1	2	0
TCTGCTATAGGTGGTT	alt_666_fdr	11	18	10	3	15	8	3	1	10	6
ACTATGGGCGCGCCCG	alt_666_fdr	0	3	0	0	2	0	0	0	1	0
ATGCTTTCGAGGTCGG	alt_666_fdr	12	28	21	16	28	15	28	16	29	16
CAGCGCGCTGGCCGTC	alt_666_fdr	8	13	6	8	11	9	17	4	14	3
CGTCGGCGATATCGAT	alt_666_fdr	0	1	1	0	0	0	0	0	0	0
TTCAGCATCGTCTCGG	alt_666_fdr	21	38	40	29	47	21	42	31	42	16
ACCCCTATGGACGCCC	alt_666_fdr	17	28	14	19	32	10	32	24	22	14
ATCGGTATGTTCATCC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCTCAGCCTTGCT	alt_666_fdr	5	20	13	9	17	11	25	14	22	16
ACCACTCGGATCCTTT	alt_666_fdr	1	8	6	6	13	4	9	4	12	2
ATCACATGAGTGTAGA	alt_666_fdr	10	35	7	19	41	23	28	6	27	15
AACGATGATGACTCGC	alt_666_fdr	29	50	43	28	54	30	60	30	72	30
AAAAATTATATTTTTG	alt_666_fdr	2	6	7	5	7	7	10	4	9	4
GTCCGACACCTGGCCG	alt_666_fdr	37	62	33	33	67	44	62	25	47	25
GCTTGGTCTACCCGGC	alt_666_fdr	7	15	5	4	14	8	17	5	16	9
GGGAGTTCTGATAAGG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
ATTAGATTACACGTCT	alt_666_fdr	42	57	39	37	70	26	92	42	77	27
GGCCGATCTTCGTCTG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTTTTAAGTTTAC	alt_666_fdr	0	16	8	9	16	3	13	3	25	7
CTGTCGCCAATTAGTA	alt_666_fdr	4	7	4	2	14	4	4	7	5	3
CCATTCCTGCTTGTCC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TAACCGTTCCATAGGA	alt_666_fdr	8	16	22	7	23	17	24	8	36	12
GCGGATGGCGTAGTTA	alt_666_fdr	5	1	0	0	5	3	3	0	4	7
CGTCCTCATCCGTTTC	alt_666_fdr	5	23	12	9	25	7	30	13	24	11
CGCCTCGCTCGCTTTC	alt_666_fdr	2	21	9	7	14	5	22	8	11	3
TTCGCCTACGCATGCC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CCCCCTAACCGAGACG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TCGCTGTTGCCACATG	alt_666_fdr	18	32	19	16	35	13	52	19	48	17
TTAAATACAGGAGCCT	alt_666_fdr	14	19	13	12	21	10	28	5	29	15
TGATGGGAGAACGATT	alt_666_fdr	40	69	43	40	59	32	55	26	62	24
CGGTTGACGTGTTTCT	alt_666_fdr	24	43	25	25	47	24	53	29	54	28
GCGGGTTGCTGTCCAC	alt_666_fdr	97	203	127	110	234	109	197	117	199	96
TAACTTTCACCTATTG	alt_666_fdr	24	41	46	37	38	31	62	25	60	32
GCACTTTATATTGACT	alt_666_fdr	6	20	9	7	11	4	16	5	15	9
TGGTCTTATGCTATGA	alt_666_fdr	5	10	7	6	9	6	11	5	17	5
AATCAGTCCCGCCTTT	alt_666_fdr	4	4	3	5	3	1	12	1	8	4
TCCTGCGTGTCTCTCT	alt_666_fdr	32	84	46	38	78	41	82	33	79	30
CCATGTAGCTTGTCGG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGGGCCCTTTCTC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCCACGACTTTTG	alt_666_fdr	0	5	6	2	6	2	9	2	5	2
CATTAGGATCCGTGGC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCTTCCCAACGTT	alt_666_fdr	8	25	16	9	24	5	28	12	19	7
TCCTGAGCCTTACGGT	alt_666_fdr	9	24	13	8	22	15	19	13	25	7
TCGGTCACATCTTCTG	alt_666_fdr	2	7	2	2	6	1	4	4	5	5
TGGGGGGAGTTTAATT	alt_666_fdr	6	14	3	6	20	7	15	3	16	13
CGCGGGTCGAACCTTG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTAACGATGCGCGAAT	alt_666_fdr	4	6	2	3	9	3	4	8	0	6
CTCCGTGCCCCTGTGA	alt_666_fdr	9	34	8	4	27	6	22	4	29	10
AGACATTAGTTCGCAC	alt_666_fdr	28	64	51	41	88	30	79	46	74	43
GATTTGAAGGTTCATC	alt_666_fdr	0	0	0	0	0	1	2	5	4	2
TCGGTTTGGGGGCCTA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTCGACTCAAACTTCA	alt_666_fdr	22	51	26	24	37	18	60	26	50	22
GTCGGGTCATTAGCCA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GAGAGGCACGGATGCC	alt_666_fdr	2	3	4	3	1	4	1	0	3	1
TCCCCATGGCTTGAGA	alt_666_fdr	3	7	4	3	2	2	5	2	4	1
AGATATAAAGGTTTTA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGGCTGTGGTTGC	alt_666_fdr	2	5	4	2	8	1	7	3	11	3
GGTGAATCTCGTCAAG	alt_666_fdr	0	3	0	0	0	1	1	2	5	0
TGCTCCGATCCGGACC	alt_666_fdr	11	13	10	7	14	10	23	9	14	14
CCGCTTGGTCATATAC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TTGTACTATCTCCTCT	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GGTCAATATCTTCCAT	alt_666_fdr	69	126	68	72	96	61	151	67	113	69
CCGGCATCTCCCCCTG	alt_666_fdr	27	44	14	20	33	20	48	21	44	10
GGTACTGTTGTTCGGA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TACTGTAAAGTACCCG	alt_666_fdr	16	20	9	5	24	13	22	15	14	17
CATTCTCGAAGCAGGT	alt_666_fdr	4	22	14	10	13	4	12	8	19	5
GGGTAGCTCGTGGTCA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GCGCAACAGTAAAAGC	alt_666_fdr	1	10	12	8	16	6	10	2	7	5
TATGCACGTACCCGGA	alt_666_fdr	8	27	11	8	18	9	23	6	15	9
GAAGTCCGCTTTATGC	alt_666_fdr	0	3	1	1	2	2	3	1	2	2
AGCGCCAAAGTGGCCG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTAACACAAAAAA	alt_666_fdr	0	3	3	1	5	4	9	3	5	3
AAATTGAGGAAAACAA	alt_666_fdr	0	0	0	0	1	0	1	1	1	2
TCCTGGAGATCGTACC	alt_666_fdr	16	24	11	8	31	9	31	19	21	7
CTGCTTTTTGCTGACT	alt_666_fdr	33	21	34	26	22	18	22	27	37	26
ACTTGGCCAAGGCGCC	alt_666_fdr	56	61	37	42	58	43	74	41	74	33
TCATCACTGCTTTCTT	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTATTCGTCCACTGTC	alt_666_fdr	8	20	10	6	14	12	16	7	26	10
CATCTATCCAGTTAGT	alt_666_fdr	10	19	8	12	24	3	29	12	28	11
GCCCTTCCACTGTTGC	alt_666_fdr	2	6	1	1	7	2	15	2	13	4
TCACAACGGCGCTAGG	alt_666_fdr	28	61	35	24	52	27	34	13	58	35
ATCTAATATCTCTCTA	alt_666_fdr	23	43	37	25	33	17	42	25	38	28
GTAACCCTTTCCAGCT	alt_666_fdr	0	4	0	1	7	0	0	2	4	1
TTGTGTACAATCGGCG	alt_666_fdr	1	4	2	0	3	3	4	1	4	2
CAAACAGGTTACTGGG	alt_666_fdr	7	23	8	12	21	5	25	7	16	10
AATAGATAGTCTTAGC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TATCCAAGACTTATGT	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTGTGCCTTGACCGGG	alt_666_fdr	5	19	7	15	16	15	16	7	14	8
AAAGAAGGGCAGTGTG	alt_666_fdr	4	8	3	4	12	4	11	2	18	3
TCAATGTGTCCTTTGC	alt_666_fdr	6	17	7	8	5	3	12	3	13	4
TACTGCAGCTAGTATA	alt_666_fdr	0	2	2	1	4	2	6	1	1	3
ACATTCTGATACTTGT	alt_666_fdr	2	6	6	4	10	4	7	3	13	5
TTTGCCACGGTCCTAT	alt_666_fdr	32	64	38	39	57	33	89	29	75	23
TGTCCATTTATGTCCA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCGACACACAGAG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TCCATTTCCTCGCTGG	alt_666_fdr	35	72	36	27	81	22	83	26	78	30
CTTGCTTACCATAACT	alt_666_fdr	6	18	8	10	22	8	19	9	20	8
AATCCCTATTTCCATA	alt_666_fdr	0	0	0	0	1	0	0	0	0	0
GTGTCGAGCACTCCGA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TAGAATTATAAAATTA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTTGACTATTTTC	alt_666_fdr	12	41	18	19	21	22	35	11	31	15
AGACAGCCTTAGGACG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGTACTTTCTCGA	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GTCATAAGGTGCCAAA	alt_666_fdr	18	42	22	33	40	25	47	20	42	22
ATTCCGCAAATGCTAC	alt_666_fdr	7	4	4	2	4	3	10	4	4	4
ACCGCAACATTGACCA	alt_666_fdr	23	109	38	47	102	42	129	29	133	28
TGCCGGCAAGCAATCC	alt_666_fdr	7	8	10	9	13	8	9	8	11	4
CAAATAAATACCGCAT	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
AACGGTCCTATCATGC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
GCATCTTGCCGGCGCC	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TCATCATAGCTCAGGG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
CTCATCTTGTCTTTTG	alt_666_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTGTCCGATAAT	alt_666_fdr	11	27	8	8	24	7	14	18	22	8
TGACATTTGGGGCTCT	alt_666_fdr	2	6	8	2	6	2	10	6	6	8
GTACAGGAATCTCTAC	alt_666_fdr	4	14	4	7	7	9	19	3	9	4
TATCTCCGTCGTGTAC	alt_666_fdr	1	4	2	4	5	1	3	1	7	1
TGAGGCACTAGGGCAG	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTGGTCAGTGGTC	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
AGATTGTAAGTCTTGA	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
ATTAAGCCGAGTTGTG	alt_3315_upstream	46	43	54	69	62	59	46	50	55	50
TTGGTCTCCCTATCTT	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
ACCAATGGTAAAAGCT	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAATGTTTGACCC	alt_3315_upstream	3	1	3	1	3	0	0	4	1	0
CGAGGTGCGCTCTCGA	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
CACCTCGCATTTATTA	alt_3315_upstream	61	47	89	61	51	50	52	65	60	51
CTGTTACGCCAAACCG	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGCTAGGTGTTGC	alt_3315_upstream	21	18	26	36	23	16	26	25	12	15
CCGGCAAGGCTACGTT	alt_3315_upstream	492	323	575	472	356	439	356	424	375	437
ATGACCAGTGGGTTAA	alt_3315_upstream	65	51	96	70	44	83	53	71	38	64
CTACCTTTCAACGGCA	alt_3315_upstream	28	26	37	49	30	31	27	34	30	28
GGACTCGCACTTCGGG	alt_3315_upstream	52	42	84	47	34	55	39	52	46	50
TTGCTTCTCCAGGGGC	alt_3315_upstream	68	54	107	63	60	67	44	66	50	53
CGTGTTATTGATCCGC	alt_3315_upstream	13	10	12	4	10	17	12	9	12	12
CAGCTCGACCGAGGCA	alt_3315_upstream	1	8	1	1	8	2	3	7	10	0
CATGGGCACGCCCATA	alt_3315_upstream	20	37	62	46	42	40	40	27	42	42
TGAAATTATGGTTGAT	alt_3315_upstream	127	78	150	106	73	106	79	99	81	94
CCTTCTGACATAAAAT	alt_3315_upstream	36	19	34	31	25	24	42	16	27	27
CGCCGCAAGCGTTATT	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
CGAATTCTTTCCTTTC	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
GCACGCCCTTATCGTT	alt_3315_upstream	84	68	119	101	63	87	94	100	71	71
TCTAACTGGGTCATAG	alt_3315_upstream	89	80	110	98	79	72	100	88	89	90
ACATAGCTGCGCCGAA	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
TGACGGTTCTAGCTGT	alt_3315_upstream	10	14	19	15	17	15	18	19	13	17
GCGTCTAGTTCCCTTC	alt_3315_upstream	298	265	442	381	287	317	278	300	283	302
GATTTGGACAACTGTG	alt_3315_upstream	10	6	19	20	14	18	10	11	9	12
TGTATTTCTCCCAACG	alt_3315_upstream	131	91	177	124	81	133	99	102	113	115
CAATCCTTTAAAGCAC	alt_3315_upstream	104	97	107	111	134	128	102	115	122	120
CCTGGCTAGCCATTAA	alt_3315_upstream	38	58	70	55	56	65	40	45	63	43
ACCGGTTGATACGGAA	alt_3315_upstream	10	2	13	18	2	7	12	13	4	3
TCGTTGCTTGGCTTAC	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGGGTCTGTTACA	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGCCCTTATACCT	alt_3315_upstream	14	4	13	8	9	9	4	12	10	7
TTATCGCTCTGGGTGA	alt_3315_upstream	17	9	8	18	13	21	10	10	9	15
ATTGTAGTATTTTATC	alt_3315_upstream	16	14	18	15	14	14	17	17	17	12
CACGTCGCTGTGTTTC	alt_3315_upstream	3	3	4	2	14	5	4	7	10	3
CGCCAGATGAGAGAGC	alt_3315_upstream	133	104	173	147	102	129	128	123	130	129
TTTACTTAGCCACTAA	alt_3315_upstream	19	12	10	13	6	18	8	11	8	11
TACCCTAGGCAATCAC	alt_3315_upstream	12	7	15	6	7	12	4	14	12	12
TCGCTACGTTAGGTGG	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTCCGTTCTTGAC	alt_3315_upstream	51	36	85	85	54	62	52	53	46	56
AGTGATCGGTTCTACA	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
TTGCCGTTTACCTTAC	alt_3315_upstream	27	17	38	46	20	24	16	33	19	23
GATCGTTCCACTTATT	alt_3315_upstream	35	35	48	45	23	36	41	35	46	33
TCTTACTCTGGTCGAT	alt_3315_upstream	44	42	86	66	55	50	41	56	43	50
ACCGCAGGAATGCGAC	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
CATCGCGCTCAGCCCC	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGCCCGTAGCTAA	alt_3315_upstream	199	151	277	243	198	229	194	247	180	197
GTCTGACGGCCATGAG	alt_3315_upstream	36	32	61	43	25	32	38	45	35	50
GTGGAATCTCTACTCC	alt_3315_upstream	21	17	20	24	12	33	19	29	14	20
TAGTACCCTTGCCGGA	alt_3315_upstream	57	37	64	62	41	46	41	64	47	48
ATATTATTACAATACT	alt_3315_upstream	23	22	29	30	31	34	18	27	9	24
GCTCAAGACAATAGTC	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
TGTAAATAGGTGAATG	alt_3315_upstream	82	63	127	107	66	106	58	102	82	86
CATCAGTCGGCTGAGG	alt_3315_upstream	110	98	119	106	85	93	98	90	83	132
CGTACTTGTCCGCGTG	alt_3315_upstream	136	118	163	147	109	129	111	152	132	113
CACCTGTAGGTCAACG	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
GCCCTCAGCGCGGTAG	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
AGTGATTATTTGGTTC	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGCAGCTTTCAGA	alt_3315_upstream	30	18	16	35	21	22	18	25	12	15
CCTCTGCATATAGGTC	alt_3315_upstream	10	12	11	6	5	7	8	15	3	10
TGAAGGTTTGCCGTTG	alt_3315_upstream	123	86	145	148	76	120	84	122	94	107
CCATGTTGCCCCGTTT	alt_3315_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGGTCAGGTTCGT	ref_3554_reverse	16	38	22	18	31	26	23	15	35	14
CCCGACGGGCACTTAC	ref_3554_reverse	4	5	4	3	9	5	12	3	7	5
CTTGTTTCAACATTCC	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGGGTCACCCTTT	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCCCGGCTCTTGC	ref_3554_reverse	4	3	2	3	4	1	1	4	4	3
AGGTTCCAGAAGCTAT	ref_3554_reverse	31	49	30	48	29	34	53	46	47	22
TCCCTCCCTAGACACT	ref_3554_reverse	1	5	0	0	4	3	0	0	1	1
GGTTTTAATATTGTCT	ref_3554_reverse	60	73	68	67	108	53	77	56	100	63
AGTCTTCAGGCCATTG	ref_3554_reverse	5	18	3	2	8	1	6	5	11	1
CAATCTACTGTAAGAG	ref_3554_reverse	94	120	71	91	114	84	110	95	128	96
TAGAGCAGTGTTACTG	ref_3554_reverse	67	79	66	49	87	39	89	43	110	58
TCCCCCATCCGCGACT	ref_3554_reverse	6	7	4	7	1	3	1	6	7	7
CACGGGTGGCCAGGAT	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGCCTACGTTGTC	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGCTAGCTTGTAC	ref_3554_reverse	53	59	69	43	64	60	80	55	75	66
ACACGATCGCATAAAA	alt_3554_reverse	34	40	34	29	45	33	49	32	35	31
AACAATGCCTGACATC	ref_3554_reverse	40	52	38	48	44	35	61	40	64	37
CCCCCCTTAACTTTTC	ref_3554_reverse	20	25	24	23	20	15	19	22	33	14
GATTGATCCATCATGC	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGCTCCACTTACT	ref_3554_reverse	37	48	23	43	59	41	49	27	50	27
CAAAAATCTTGCATTT	ref_3554_reverse	36	62	62	52	68	47	71	60	67	30
CGTGTGAATTTCATCA	ref_3554_reverse	173	141	176	148	141	145	163	121	164	139
CCGGCAATGGTCAACA	ref_3554_reverse	57	57	72	52	70	44	49	44	50	45
CAAATTACTGGCGTCA	ref_3554_reverse	0	0	0	0	1	0	0	0	0	0
TGCTCGTCAATCACCC	ref_3554_reverse	89	108	123	106	126	103	121	104	117	92
GCCTAACCAATGCACA	ref_3554_reverse	7	15	10	5	15	7	14	6	11	12
CAATGAGACCCTGGAA	ref_3554_reverse	75	91	97	78	111	78	121	76	94	68
GGTTACTTTAGCAGTG	ref_3554_reverse	11	9	13	11	17	7	16	10	20	7
CCTTCCCAGACATAGC	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
CGACCGACCTTTGGTA	alt_3554_reverse	1	16	2	4	5	3	7	2	17	2
TGGGGCCGCTGCCAAG	alt_3554_reverse	166	199	230	198	266	153	235	175	267	139
GTAAGTCATACCTGCT	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
TATGCCATGTCATTAC	ref_3554_reverse	12	33	17	14	13	20	31	4	25	10
CCGGGTTGCCGATTAT	ref_3554_reverse	7	6	11	8	11	8	11	7	17	9
CGAATTGATACTCGTT	ref_3554_reverse	28	43	46	39	32	28	45	32	39	31
GGGCAAGTTCTGCATC	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCTGCCCTGATGT	ref_3554_reverse	49	63	61	49	51	53	63	46	53	40
CCTATCCAACTTTTAC	ref_3554_reverse	37	48	29	26	42	29	47	23	57	23
CCAATGCTGGAATCTG	ref_3554_reverse	143	227	224	166	208	145	254	170	219	115
TGATTCATTGTATTTT	ref_3554_reverse	4	10	6	4	7	6	10	0	8	3
ACCCCTTAACTGTGTT	ref_3554_reverse	56	57	40	48	50	31	64	51	72	36
ACGTTTGGGTGCGAAT	ref_3554_reverse	74	86	65	52	63	46	68	60	86	51
AGGAACTCGGCTATAC	ref_3554_reverse	42	42	42	35	25	33	43	24	53	36
CCAAGCTGGTTGTAAT	ref_3554_reverse	54	51	71	54	59	47	61	62	63	54
GAATATCCTTTCTAGT	ref_3554_reverse	29	24	31	19	13	14	24	22	37	26
CCCCCCGCGCCGTTCC	ref_3554_reverse	56	56	52	50	47	48	54	42	49	43
AGAAAACCGTATGCTA	ref_3554_reverse	0	0	0	0	1	0	0	0	0	0
CTTGAGAAGGTATTCC	ref_3554_reverse	104	97	82	77	104	71	108	76	107	76
GGGCAGATCCGTTCAT	ref_3554_reverse	124	186	147	118	180	114	170	135	201	136
CCGGGTTCCTTGGTCT	ref_3554_reverse	5	14	10	10	15	14	9	4	11	13
AGTGCTTCATCGAACG	ref_3554_reverse	57	85	83	67	90	66	102	73	87	61
AAGGGCACCTGGTTTG	ref_3554_reverse	65	83	86	82	108	87	108	74	104	63
TCCGTAGGGAATTCTA	alt_3554_reverse	99	134	134	106	138	94	128	92	142	114
AATGTGGTATTCAGGA	ref_3554_reverse	12	12	10	8	11	10	8	10	24	4
GGACGTCGTAAGTGAC	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
ACCAGCCGAAGTTAGT	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
TTGTACGCCACCAAAT	ref_3554_reverse	59	88	93	75	114	42	91	62	83	50
GTGCCGAAGGGTACAC	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
GTCTTTTTGTGTACCT	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
CGAACCGGTAACACTT	ref_3554_reverse	7	6	3	9	3	3	5	5	6	2
TTTCCATATTCGAGTC	ref_3554_reverse	23	19	23	16	24	25	26	25	28	23
CTCAGGAGAGCCATAC	ref_3554_reverse	45	56	45	44	61	39	64	46	57	49
CGTCAGTCCCGGGATT	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAGGTGAACTATA	ref_3554_reverse	126	142	120	116	138	95	173	102	162	110
GTCCACCCCACCATTA	ref_3554_reverse	27	30	46	41	46	34	46	28	48	39
TCATATAGTTCTCCAC	ref_3554_reverse	18	35	26	24	33	24	39	22	27	14
CCTATACGCAACTTGT	ref_3554_reverse	19	29	18	24	30	19	35	19	31	15
CAGTGTTTATGTACAA	ref_3554_reverse	0	2	1	1	2	0	3	1	2	2
TGATGGCGCCTCCTAC	ref_3554_reverse	8	12	14	8	10	12	14	5	22	10
GACATGCAAGCCGGGG	ref_3554_reverse	17	22	32	16	21	32	22	20	21	19
CCTCCGGCCTTGCTAT	ref_3554_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGGCCTTTTGCGT	ref_3554_reverse	9	30	16	14	40	11	33	22	38	9
GGGGAGCGTCTATTTC	ref_3554_reverse	8	19	11	12	7	6	18	14	20	13
AGCAAGTTATAATGTG	ref_3554_reverse	22	10	25	21	26	21	18	16	26	13
GTTAGCTTCGCTTCTT	ref_3554_reverse	13	17	37	18	27	20	23	18	39	18
CCCGACCGGGGCTTAG	ref_3554_reverse	25	38	31	33	42	19	44	32	47	18
TGTAGGTAAGCTTATC	ref_3554_reverse	54	52	40	62	82	42	41	52	72	36
GCGGTTCATTGATGGC	ref_3554_reverse	8	4	7	3	4	4	6	1	7	2
CTTGTAGAAACCGTCT	ref_3554_reverse	9	18	15	17	19	13	15	8	17	17
TACAAACCACAGATTG	ref_3554_reverse	1	0	0	0	0	0	1	0	0	0
TATGGCCAATTCATAC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCATACAGCCCTCCG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCTGTTACGTAAT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CCAGACGTTTTTCCCT	alt_5261_reverse	7	24	12	13	19	14	18	10	27	6
TGTAACAGGGTCAGGG	alt_5261_reverse	0	7	9	7	6	4	8	7	9	2
GATACTTGCTCTGATG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTGACACAGGTCC	alt_5261_reverse	5	8	13	3	11	7	12	6	11	5
GATTTCGACGCAAAAT	alt_5261_reverse	23	28	19	20	34	30	37	32	24	15
AATCTTTTACTCCGGG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGACCCGTCGGAT	alt_5261_reverse	10	8	3	1	12	4	8	6	9	7
TAATGATCAGATCGAC	alt_5261_reverse	8	11	13	10	14	5	15	6	16	7
GGACATGGGCAGCGAA	alt_5261_reverse	14	16	12	19	14	16	15	14	17	14
CCTTTAAATCATCATG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCTGATTGAGTAT	alt_5261_reverse	0	0	2	1	5	0	3	1	1	0
TAAGTAGGGGTTAGCA	alt_5261_reverse	21	21	14	9	19	13	29	15	20	22
TGAGGAAAAGCTCACG	alt_5261_reverse	8	18	11	28	20	9	14	16	19	9
GCTAAGCATTTTTTCA	alt_5261_reverse	20	14	18	15	20	17	25	9	41	18
ACTTCAGAGACTCGAG	alt_5261_reverse	26	39	41	31	31	30	34	22	66	25
GTGTCGGAGCAGGCCA	alt_5261_reverse	46	57	47	43	54	27	68	28	47	35
TTAGTCGGTTGTAGGA	alt_5261_reverse	34	29	29	23	50	31	60	34	44	23
CGGTTCGTGCTCCTCC	alt_5261_reverse	35	59	39	27	52	27	72	17	85	35
TGTTAACAATCAACGT	alt_5261_reverse	6	6	3	7	13	9	10	7	10	2
CATCCGGGCCTCGTTG	alt_5261_reverse	18	28	16	14	29	26	23	8	32	22
TCGGAGGATTAATTGT	alt_5261_reverse	15	12	11	18	21	15	15	12	22	8
GGGTAATTGAGACTTT	alt_5261_reverse	1	2	1	1	6	5	0	4	1	2
TTGTCTGAGCGTAGCA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCCCTCGGCCGAG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
ACCATTGAAATCTAGA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTCACAACTGGGA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
AAAGGGATTATGTCAC	alt_5261_reverse	31	43	25	31	36	21	43	25	36	23
TAAGCCTAGTTCAGCC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCGGGCGTTTCTG	alt_5261_reverse	176	233	194	178	184	158	230	137	241	125
GTACAGACATGTGTTA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCACTGAGGCAGT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCGTTGGGCTGAC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTACGATTACATTCGC	alt_5261_reverse	0	3	2	1	0	0	0	0	0	0
TTAGCCTGCGTCTCGA	alt_5261_reverse	9	28	14	10	24	11	28	12	23	9
ACACTGGAAGCGTTTA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
ACAGGCGCGTCAGTTC	alt_5261_reverse	2	8	6	1	5	2	8	5	5	5
ATGTTCAATCCCGCCT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTCGTAAAGGTAA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GATATCCTCTATCGGG	alt_5261_reverse	11	33	25	13	20	20	26	20	24	14
TTCTTCTAAGAACAAG	alt_5261_reverse	37	50	58	33	63	42	42	36	67	53
CTGTTTGTTGTGAGGT	alt_5261_reverse	4	4	7	3	16	7	8	6	12	6
ATGTCAACTCGTAATT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTAATTCACGTGGGCC	alt_5261_reverse	83	103	92	82	105	66	111	75	96	77
GGGCTGGGGATTAAAG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CAGCAACTAGTACTTA	alt_5261_reverse	8	34	16	22	45	16	31	9	46	11
ATCGGCTGTGTTAGAA	alt_5261_reverse	37	56	37	27	53	25	63	35	61	39
ACTTTGTTGGTGTTCC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTATTCATTCTCG	alt_5261_reverse	8	4	2	4	4	3	4	6	7	3
TCACCCGTGGGTTTGC	alt_5261_reverse	4	14	8	6	12	8	13	5	10	4
CGCGCTTCGTCCTAAG	alt_5261_reverse	52	59	45	34	54	28	59	25	72	43
AGAACCATGTAATATA	alt_5261_reverse	74	110	92	89	102	97	139	78	132	75
TTATCCTTGCTTCTTT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTATTGAACGTGTTTG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TATTCTTCTCCGAGCG	alt_5261_reverse	55	58	67	54	65	51	79	48	82	41
TAAGTATTTTTGTAGA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GACCAGGCAAAGACGT	alt_5261_reverse	4	5	9	4	9	3	18	5	8	15
CATCTGTACTCGCGTA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGCACGGATGCAA	alt_5261_reverse	129	170	123	115	162	127	163	90	160	87
TTTGCTCGAAGCGTGG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGCCACGAGCTTC	alt_5261_reverse	31	43	34	35	48	29	50	25	54	19
CGCGGATTCTCTAAAA	alt_5261_reverse	6	11	12	3	8	4	8	9	10	9
ATTAGGCCAAGACCCA	alt_5261_reverse	14	17	20	19	30	9	27	18	17	7
GGATACCGGTAGTCAG	alt_5261_reverse	24	25	16	13	25	16	20	11	38	15
CTATTGATGTTGTTTC	alt_5261_reverse	14	18	27	23	26	13	20	14	15	15
AAATTCTTCGATCTAG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCATGGGGATGGC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CCGTAGTCGTGTAGAG	alt_5261_reverse	14	13	22	15	13	14	29	9	23	15
CAGGCCTTTTAGGGTT	alt_5261_reverse	28	31	19	14	24	18	20	15	26	16
ATCGGGGGCTATAATA	alt_5261_reverse	28	31	33	26	29	16	14	25	22	17
CGAATGCTGTACCACC	alt_5261_reverse	10	12	14	17	4	8	16	7	15	5
AGCAGTCATGTCTTAT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
AAATGTTTTAAAAAAC	alt_5261_reverse	3	10	5	8	4	7	5	9	14	10
TGTCCTTTTGCTTTAA	alt_5261_reverse	3	5	7	12	13	10	6	7	19	3
TCCAGCTTGAAAAATA	alt_5261_reverse	7	17	15	7	16	10	15	8	16	11
TTTGCACGTGTCTCGA	alt_5261_reverse	17	30	21	8	24	14	25	10	14	25
GTAGGTGACATGGGCG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CAGCGTAATTAGAAAT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTGCGGGTTTATGATA	alt_5261_reverse	8	3	4	7	4	2	2	3	18	3
CCCGTGGCAAACATCG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGTGAACTATTAG	alt_5261_reverse	9	20	17	8	14	17	20	10	17	17
GATATTCTTGCTGTCC	alt_5261_reverse	4	11	13	4	12	9	6	4	6	6
CACATCTACCGCGCCG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGCTTTACTTTTC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CAAGTACCCGGTCCCA	alt_5261_reverse	19	21	16	13	27	20	27	9	30	19
CGCCGCTAAGCGTCAT	alt_5261_reverse	28	32	30	41	30	19	37	23	27	28
CGATTCCTCGCCGGTG	alt_5261_reverse	1	0	3	4	1	1	0	0	0	1
CCCTAACGGTTCTCCG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTTGACTTTATTT	alt_5261_reverse	6	15	10	7	25	13	19	7	12	9
TAACCTCACGGACGGC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCTGGGCGTCTATAGG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTGGCCTATTTGGCGC	alt_5261_reverse	27	44	36	28	56	27	37	22	54	23
TCGTCGAGACTGAGAA	alt_5261_reverse	46	52	51	45	58	36	67	28	60	46
TGACAAAGCGCCGTCA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
AATCGATATATAGGTT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GATCAAGGTTCTGGAG	alt_5261_reverse	5	0	5	2	3	3	2	2	8	1
TACGACCTTAGATATT	alt_5261_reverse	15	23	19	16	13	18	19	14	31	13
CTTACGCATTCCTTTG	alt_5261_reverse	7	13	3	5	11	6	10	6	15	10
AAATTGTACTGATCCA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CGCTGAATACGAGTGT	alt_5261_reverse	21	23	18	13	18	12	34	13	17	13
CTACATAAAGTTAGCT	alt_5261_reverse	1	1	0	0	0	0	0	0	0	0
GTGTGCGATTTCAATC	alt_5261_reverse	11	12	5	8	14	6	11	2	10	4
CATGCTTGTTAATACA	alt_5261_reverse	49	83	54	48	90	65	89	40	72	38
TCTTACCGCATATACG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CAGATTCTCGTACAAA	alt_5261_reverse	3	14	15	8	9	13	11	9	16	5
AGCCGTCCACAGCTAG	alt_5261_reverse	9	19	16	10	14	3	15	7	19	5
CGACTGTGGAGGCGAT	alt_5261_reverse	20	39	41	25	53	19	48	18	55	22
CGGGCCGCCTGCCAAG	alt_5261_reverse	4	12	3	1	11	1	7	6	10	1
GAAAGCCCGGATGGGT	alt_5261_reverse	6	5	8	4	2	4	9	6	7	7
GTGTGGTCGGTGCACA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGCCAGTTGTCCT	alt_5261_reverse	7	14	10	12	14	8	17	6	19	10
TCACCATTGTACGCTT	alt_5261_reverse	7	10	6	7	10	4	14	10	13	1
TATGGCATCGTTTAGC	alt_5261_reverse	0	1	5	1	6	2	4	3	3	1
TATGCAGTCCTACAGC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTCATAGAAACTATCG	alt_5261_reverse	10	22	18	13	29	12	22	16	36	7
CCAGGCTCCATGCTCG	alt_5261_reverse	17	34	26	12	31	18	49	11	39	17
GCGGTCACTCGGGCTG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TATGTATAGCGATGAC	alt_5261_reverse	2	1	0	0	2	1	2	3	2	1
AAATTTTCCCTGATCT	alt_5261_reverse	2	2	1	0	0	0	2	0	1	2
ACACGCAATATACTAG	alt_5261_reverse	0	0	0	0	1	0	0	0	0	0
TGCTCTCTTAGTCTGT	alt_5261_reverse	2	3	2	1	6	2	5	3	2	1
CCGGCTTAATCACTAT	alt_5261_reverse	6	34	4	10	43	0	37	5	36	4
GTCAATTATATGTCAG	alt_5261_reverse	28	28	30	24	36	16	34	21	33	16
TGCCCGACCGCAATTC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCTACCCCAAGATCAA	alt_5261_reverse	16	51	38	26	51	25	62	13	69	34
AAAGATACGGCCTCTT	alt_5261_reverse	5	5	9	4	5	8	17	10	8	5
CACCTCTCGGGCATCT	alt_5261_reverse	9	8	10	18	8	9	17	6	8	9
TCCCTCTAGCTCTTCG	alt_5261_reverse	31	25	27	15	17	17	15	15	18	14
CCAGGAATTATTTAGC	alt_5261_reverse	18	33	22	13	31	22	50	29	42	21
CGCAGCTTTTGCAACA	alt_5261_reverse	4	1	3	3	1	4	7	4	7	1
TCCCGCGTGAGTGCGA	alt_5261_reverse	22	26	25	25	32	31	21	28	30	18
AATTCAATGGTACATT	alt_5261_reverse	6	7	11	2	3	7	4	7	3	6
TCTCTTATTTAAGGTT	alt_5261_reverse	31	64	47	30	47	33	55	38	49	32
TAATAAGTTGCGACCT	alt_5261_reverse	24	34	35	31	51	26	44	38	38	18
GGTATATGCACCTCAG	alt_5261_reverse	27	60	42	47	46	41	46	31	66	34
CTTTTGTTTGTTGTTC	alt_5261_reverse	7	13	0	3	3	2	9	4	3	3
TAATGTGTTCCGGTTT	alt_5261_reverse	18	26	36	24	31	16	31	18	32	22
GTATACCCATATTGCC	alt_5261_reverse	11	13	12	6	18	7	10	13	8	12
CTAACCATATCCGGTA	alt_5261_reverse	34	24	28	24	45	25	44	20	37	23
TGATCTGTTTCGATTG	alt_5261_reverse	42	55	61	47	57	40	65	38	83	33
GCCTTTGGATTCATTC	alt_5261_reverse	35	66	44	47	64	35	72	50	57	38
TTCTGTTTACGAACTA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
AAATATCATGGTCCTC	alt_5261_reverse	5	4	2	3	3	5	2	2	4	1
TTCATTACGACTTGGC	alt_5261_reverse	42	63	34	28	55	31	71	35	53	23
TACGGCCGTATCGGGC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
ATGGTTCTCAAGGAGC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCCCACACTGTTC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCGTATGCAAAGGTGG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CAACCAATTGTAATTA	alt_5261_reverse	11	11	12	10	9	12	20	5	17	9
GCTTTGCCGTCCCAGG	alt_5261_reverse	20	38	23	28	47	22	25	31	49	19
GCACATTTTGGTAGGG	alt_5261_reverse	5	6	11	7	2	4	10	6	9	3
CTCTTGAGTTTAGCGG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GGGCCTCGGCAACGGA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGTCTCTGTTCCG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TGTTAGGTGGAGAGCG	alt_5261_reverse	27	47	49	28	50	36	62	27	75	30
AATTCTTGAAAGTTAT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
ACTTAAAGCCGATTGG	alt_5261_reverse	5	9	9	15	6	7	5	6	7	5
CCTTACAGATGAGTAA	alt_5261_reverse	8	15	13	6	14	17	22	10	18	7
GCAGCTTGGTGCGCTT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCGATTGCATACG	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTTTCCCAGCTC	alt_5261_reverse	19	32	11	14	19	18	26	14	18	16
GGGCCCATCTCCGTGT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GATGGGGTACATTAGG	alt_5261_reverse	31	54	48	31	59	27	48	29	63	32
TGGACGACGGACGAGC	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GACCGTGCGCCTAACC	alt_5261_reverse	12	9	13	10	14	12	12	11	18	15
GGTACCCGAAACGGGA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CGATCAGACTCTATTT	alt_5261_reverse	4	8	8	6	7	10	9	6	11	4
GGCTGGTTAGAAAATT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CATATTGGAATCATAA	alt_5261_reverse	24	52	33	35	48	25	32	22	48	24
ACTCGCCTTAGTATTT	alt_5261_reverse	5	6	7	10	6	7	10	5	14	9
TATGTTGTTCCATTTG	alt_5261_reverse	20	31	29	17	40	24	29	23	34	16
TAAGATCTGCGTTTAA	alt_5261_reverse	1	0	2	2	0	2	0	2	2	0
CGGCGGCTGTGGCTGT	alt_5261_reverse	2	2	3	5	7	0	3	6	6	1
TCGGCCTTTTCCTTGT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTTATACGCTCTA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGTAGGCTAGCGG	alt_5261_reverse	7	4	2	1	2	7	7	3	6	2
ACGTATGCCGTCGGGC	alt_5261_reverse	11	13	7	3	14	1	12	5	14	6
CTTAGTTAGTTTATGC	alt_5261_reverse	15	10	15	9	10	14	6	5	20	8
TGTTTCCTCCCTCGTT	alt_5261_reverse	0	8	1	1	1	2	3	1	3	5
TAAGCTGAGAAACGTG	alt_5261_reverse	3	5	2	7	5	0	8	2	5	4
CGGATACTGTTGGAGT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
AGGTCGGCGGACATCT	alt_5261_reverse	283	331	343	280	386	248	363	235	333	227
ATATTACAACAATTAA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TATTTAGTAAGTACAA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCCGTCCTGCCAG	alt_5261_reverse	0	4	3	0	4	1	2	3	1	1
TAATTGTGTGCGAGAG	alt_5261_reverse	32	47	45	28	51	23	27	24	44	32
GAGTTTCTCGGTGTTT	alt_5261_reverse	5	7	8	6	9	7	9	4	10	3
CTACTTCCTTTTTTTG	alt_5261_reverse	35	54	42	31	43	50	53	34	51	28
AAGATCTGGCTCATGA	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
GATTAACCGCCTATCT	alt_5261_reverse	16	28	23	24	25	11	24	13	21	16
GTTAATACAGTACTGA	alt_5261_reverse	38	75	56	49	68	53	79	38	75	44
CGTGTTAGAATGTCGC	alt_5261_reverse	21	26	18	14	16	9	20	16	24	7
GAATTTAAGGCGAGTT	alt_5261_reverse	0	0	0	0	0	0	0	0	0	0
CGATCCTACGTCCGTC	alt_776_missing	2	13	13	8	12	9	9	8	18	7
GTTACGAATTCTGGAA	alt_776_missing	41	58	45	36	70	39	50	47	58	38
TCCGGTTGGTATCCGA	alt_776_missing	26	29	29	16	38	28	28	23	57	18
ACCCACACAGGGGGCC	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TCTAATTCCAATGTAG	alt_776_missing	7	13	12	10	14	5	15	14	23	12
TTGCACGGGAGTAATA	alt_776_missing	38	60	36	37	65	26	51	22	52	19
GCTGATGTTCTGTCTA	alt_776_missing	13	19	16	10	15	14	20	15	14	6
CGTTAACGTAACTAGG	alt_776_missing	3	1	0	0	5	0	3	1	4	2
TGGTTCATCAACGGGT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TGCAGTCTGTGTCGGT	alt_776_missing	15	33	13	21	21	21	26	11	27	14
CCGTGCCCACATGGCG	alt_776_missing	0	0	0	0	0	0	0	0	0	0
ATTGGGAATAGGCTCG	alt_776_missing	26	36	26	12	41	25	48	26	52	33
GGTACTTGTAGCCTAT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
AGACTCGCGCACATCG	alt_776_missing	22	23	29	16	24	16	20	12	18	13
AGGCGTTGCATAGTTG	alt_776_missing	19	30	12	38	37	16	39	16	37	14
AACCGTCCGGATGTCG	alt_776_missing	195	340	222	214	305	219	323	188	366	202
TTACTTACCTTAGTTG	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGTATGACGCTT	alt_776_missing	0	1	0	1	3	1	0	1	3	4
CCCCTATGGCTGTGGC	alt_776_missing	9	10	10	7	19	7	13	6	13	11
TGCGGCATTTGGATGC	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TATGGGTACCTTAGTA	alt_776_missing	0	0	0	0	0	0	0	0	0	0
ATCTTTGAACCCCCCC	alt_776_missing	7	11	11	4	11	5	10	7	10	6
ATGCAAGAGCTGGGCA	alt_776_missing	0	0	0	0	0	0	0	0	0	0
AGTTTGTCATTTTAAT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
GAAACTGGTCGTAGAT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
GAGTCCACGCTTAATG	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TTGTTCCTGGTTACGA	alt_776_missing	21	26	31	23	43	18	41	25	27	19
ATGCGATTCGGCAAAC	alt_776_missing	32	38	39	31	54	30	58	16	44	35
GTACGAATTATGTCTA	alt_776_missing	16	26	16	25	21	25	29	23	33	21
CTGAGTCAAAGCTAAT	alt_776_missing	6	18	10	6	11	7	21	1	16	6
CATATGTTCACGAAGG	alt_776_missing	11	25	21	11	12	17	19	10	26	15
TTATAGACGTCATCTG	alt_776_missing	6	13	2	5	7	7	11	3	6	8
TCATCAACCGTCACAT	alt_776_missing	72	117	98	91	104	74	149	53	131	79
GCCCGTGGTACTTTGG	alt_776_missing	29	50	25	15	46	33	44	18	59	18
CTATACTTATGCACCT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
CGGGTTACGCGTTAAC	alt_776_missing	48	45	52	42	41	41	64	40	49	36
AGCCGGTTTCGTTGTG	alt_776_missing	0	0	0	0	0	0	0	0	0	0
ATTAGGACTCCTCTCC	alt_776_missing	1	10	3	3	8	1	20	3	12	2
TGCGCGTCGGTTTTAT	alt_776_missing	7	15	7	7	12	5	14	1	9	4
CCCCTTTCTCCGTGGG	alt_776_missing	34	59	26	25	52	34	49	30	47	22
GGAAACCTACAAGTCT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
CATCCTCTACAGTTTA	alt_776_missing	13	26	18	9	25	17	22	13	32	18
GGCATCGAATGTTACG	alt_776_missing	9	11	14	13	9	8	19	17	19	3
TTTAGCGGAACATTGT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
GCAACTGTAGTCGTAT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TAACCGGCTTCCGGAT	alt_776_missing	62	87	64	59	68	50	77	54	80	56
TGTAAGGACACGCGGG	alt_776_missing	0	0	0	0	0	0	0	0	0	0
GGATAAGTGTTGGTAT	alt_776_missing	20	33	27	18	40	25	31	18	49	22
AATTAGGATTCAAACA	alt_776_missing	6	6	10	7	16	5	8	7	18	8
TCGAATATATATGCTC	alt_776_missing	28	35	28	22	38	24	44	25	47	33
TGCAAGCATCAAATTA	alt_776_missing	43	68	62	32	57	41	65	52	52	41
TCATTGGTGCCCTGTA	alt_776_missing	24	52	46	32	40	25	50	39	57	44
TAGTATTGCTCCTGTA	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TTACCGCGTAGAATTA	alt_776_missing	54	56	52	51	85	52	71	43	79	39
AGTTTCTAGCTCAGGC	alt_776_missing	10	13	4	9	11	9	9	3	14	7
GTTTGTATGGCCGACA	alt_776_missing	9	10	11	15	6	9	20	5	17	16
ATTATCAATGTCTATG	alt_776_missing	22	38	35	24	35	36	34	14	46	15
GTACGCTTTTATCAAG	alt_776_missing	38	37	36	31	43	40	50	17	33	20
GTCTTTTATCTAGAAC	alt_776_missing	0	0	0	0	0	0	0	0	0	0
CTAAGGAATCATAATA	alt_776_missing	28	29	26	23	28	20	47	18	36	18
TTGGTGCTTCGCTTGT	alt_776_missing	0	0	0	0	0	0	0	0	0	0
TACGTTTTTGGTTCTA	ref_1903_upstream	4	10	5	4	0	5	3	1	4	2
CTCGCTTACCATTTCC	ref_1903_upstream	9	17	4	5	15	4	18	2	11	4
TTTTTCGTGACCCAAT	ref_1903_upstream	8	3	2	7	6	1	8	2	7	4
CCTGAGAAACCACTAG	ref_1903_upstream	17	33	32	35	34	19	31	17	41	23
GCTCTTTCCTACCAGG	ref_1903_upstream	12	24	22	15	26	19	25	18	23	17
GTCGGTGAGTAGATCA	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
ATTTACCTGAGTTCAG	ref_1903_upstream	15	17	16	12	18	11	30	7	27	13
TTATCTTTAACTTCGG	ref_1903_upstream	8	7	12	3	7	10	13	8	17	5
TGACGATGTCCGTTTT	ref_1903_upstream	20	24	39	22	42	31	37	24	38	17
GTTGACCACTGCTGAC	ref_1903_upstream	8	17	10	6	18	8	19	5	23	14
CATATATGTATTGCCA	ref_1903_upstream	6	7	11	12	20	8	23	10	21	3
AAATGAGGAGGGCTTT	ref_1903_upstream	4	7	6	1	7	6	6	4	7	4
GTAATCAGTTTGTATG	ref_1903_upstream	31	59	44	24	44	29	45	23	40	20
CATCATCGTGCTACAT	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
CACTCCACAGACGCAG	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTTGTAGCCTTTA	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCGCTCCCTTCTT	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
GGTAACTTCTTGATAG	ref_1903_upstream	28	24	16	15	37	14	22	16	36	17
TTTTCCTAGACGGCTT	ref_1903_upstream	2	1	0	0	3	0	1	2	1	0
GGGCCGCATACAACCT	ref_1903_upstream	49	84	74	73	94	63	104	64	131	46
ACAGCTGGACGCAATG	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
CCCTATATTAGTTGTC	ref_1903_upstream	15	46	25	17	54	17	51	12	75	20
GGACTAAAGATCCTGC	ref_1903_upstream	24	42	33	16	27	19	35	11	43	27
AACGCCTTTTAATCCT	ref_1903_upstream	10	13	24	21	14	18	23	14	19	12
GCAAGTATCCGTGTAT	ref_1903_upstream	19	28	14	17	30	12	38	11	43	11
CCCGCTTGTGAACCAT	ref_1903_upstream	25	47	34	40	43	35	61	30	69	22
TCACATCTTCAGATAA	ref_1903_upstream	28	26	27	18	43	23	38	30	50	20
GTTAGACTCTCCTCGA	ref_1903_upstream	4	3	3	3	4	7	4	8	10	4
GAACATATCGACTAGC	ref_1903_upstream	19	28	23	8	27	13	21	14	30	13
ATACGCGGTAAAGGTA	ref_1903_upstream	22	33	22	23	48	30	43	21	37	21
CACTAGTTAAGTGGTA	ref_1903_upstream	4	18	2	10	12	2	9	2	11	9
GTCCCTGAGCCTTGGC	ref_1903_upstream	58	94	58	57	90	40	98	41	98	36
TAGAGCTATGGTTGGT	ref_1903_upstream	48	65	50	47	77	39	71	40	84	43
ACTCCGAGTCCGTCTC	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTGTTCCCGCATC	ref_1903_upstream	6	4	8	7	11	2	7	2	14	8
GCTAGCTCATAACTCT	ref_1903_upstream	13	15	12	10	20	7	20	6	17	5
CCCTGTGCTGGCTATG	ref_1903_upstream	4	8	3	1	5	4	2	2	5	5
CGTCTAACTCCTTAGT	ref_1903_upstream	50	69	47	34	84	35	81	25	81	40
TATTCGCGGCCATTTT	ref_1903_upstream	0	0	1	0	2	4	2	3	1	2
AGCGTCCAATTGGTAG	ref_1903_upstream	13	28	18	16	31	29	26	20	20	10
CCGTAAAGACTATCCG	ref_1903_upstream	93	105	119	76	130	83	139	93	157	69
CTCAAAGGATAGTCTG	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
ATCAATTTTTCATTGG	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTCTCGGAGTCGG	ref_1903_upstream	27	37	25	15	38	18	33	18	38	11
TTTTGGGCTTCCTATG	ref_1903_upstream	2	18	9	4	26	4	13	4	25	2
ACCACACCGTGTGGTC	ref_1903_upstream	7	16	10	11	24	8	23	15	24	5
CCTCCGCCCCTCTTTC	ref_1903_upstream	77	134	126	87	165	94	137	114	139	81
GGACCCCTGCCCATAT	ref_1903_upstream	22	36	20	13	33	22	34	7	29	23
GTGAAGATTCATGGGT	ref_1903_upstream	55	103	79	74	101	75	113	70	122	53
GGGATGTACCGCTGTA	ref_1903_upstream	30	30	20	16	40	27	28	20	37	24
GTATATCGGATATACG	ref_1903_upstream	15	31	31	22	44	15	34	24	34	18
ATGTAAAGCATTATAA	ref_1903_upstream	3	12	3	9	16	2	9	6	12	3
GTGAACTGCCATCTAG	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
CTCGCGGTTTTATAGC	ref_1903_upstream	52	66	37	36	62	45	74	41	67	26
TTAACGTGCTACTGGG	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTTGCTGCACATT	ref_1903_upstream	60	111	84	73	72	53	96	67	111	47
TAACCGAGGCTTTGTC	ref_1903_upstream	5	8	8	7	9	5	9	7	12	1
GCCGTGGGTGATGTCT	ref_1903_upstream	6	10	6	1	7	3	10	1	9	1
TGTACTTTATTGATCC	ref_1903_upstream	23	32	27	22	29	21	36	23	27	25
TATAGTGCGTGTATTT	ref_1903_upstream	1	2	1	1	2	2	4	0	2	0
ATATACAAGCATTTCC	ref_1903_upstream	0	0	0	0	0	0	0	0	0	0
GCACGTTTTAATCAGG	ref_1903_upstream	28	60	43	42	43	49	53	41	76	23
ACTTGGCTGCTCCTTA	ref_5376_missing	43	38	44	38	34	22	37	24	43	31
ATCACACTCTTACAAT	ref_5376_missing	6	11	3	4	6	10	13	8	10	6
GGAGTTTGCGATTGGA	ref_5376_missing	0	0	0	0	0	0	0	0	0	0
GAGGTCTCTCGCTTTA	ref_5376_missing	5	6	16	5	7	5	16	5	7	5
GACCGCCTCCTTAGGC	ref_5376_missing	8	10	2	5	9	5	8	7	12	3
GCACGTAACGACACCT	ref_5376_missing	150	155	188	149	163	141	180	176	182	132
GGGCTGTGGCAGCGAG	ref_5376_missing	69	83	82	73	98	63	92	71	94	61
ACGTTTATTTGCTGCG	ref_5376_missing	0	0	0	0	0	0	0	0	0	0
TCTACTCCGCCTATCC	ref_5376_missing	0	0	0	0	0	0	0	0	0	0
ACCGCTCGGTCTAGTC	ref_5376_missing	0	0	0	0	0	0	0	0	0	0
GCCGCCGCACGTCCCT	ref_5376_missing	4	25	12	12	26	9	31	9	23	4
GGGTTATTTCCTTACG	ref_5376_missing	24	29	24	30	24	25	37	18	34	24
GGACAATGAGGGGAAT	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
GTTGTTTAGTCGTCTA	ref_5376_missing	13	17	17	17	24	7	13	12	18	8
ATAATCAGATCGGCTG	ref_5376_missing	95	103	125	82	108	86	104	83	127	81
GATGGACCGGTTAATC	alt_5376_missing	17	18	18	13	14	12	15	12	15	5
TTGAGAAGACTCCCCA	ref_5376_missing	20	79	41	28	75	28	67	25	61	27
TATCACAGCTAGGCTT	ref_5376_missing	15	37	27	20	38	13	15	16	46	22
CCTCGATAATTGGTTC	ref_5376_missing	336	477	357	319	431	325	527	267	491	300
GTGCTATTTCGGGCCG	ref_5376_missing	40	55	32	53	40	27	48	28	52	27
TCGGTTGTGATGTGCT	ref_5376_missing	3	16	1	4	14	2	19	4	16	5
CGAAGTTAGGGGTTAA	ref_5376_missing	38	40	32	24	42	18	27	33	44	28
TAGTAATGAGACGGTA	ref_5376_missing	0	0	0	0	0	0	0	0	0	0
GCAAATGCTTTGAGCC	ref_5376_missing	0	0	0	0	0	0	0	0	0	0
AATTTCCTTGAGGATA	ref_5376_missing	41	35	59	45	49	51	55	54	55	46
GGTTCATGAGCTGGTG	ref_5376_missing	29	29	21	18	14	23	25	18	26	10
ACTGAGAAGGGTTCTA	ref_5376_missing	6	12	12	7	12	16	13	12	19	13
TTTGAAGTACTGTCAA	ref_5376_missing	5	14	7	7	8	4	10	4	9	8
AAATGGTTTCCATCAA	ref_5376_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTAAGTCCTTAA	ref_5376_missing	31	42	35	27	29	24	27	28	38	16
CTTTTACGGCGTGCTG	ref_5376_missing	26	40	35	35	43	31	52	25	47	28
TGAGCTGGCCGGCCTA	ref_5376_missing	53	56	62	50	63	52	66	56	75	46
GTAAACTTTTGTGGTC	ref_5376_missing	32	48	42	52	47	40	63	36	50	36
CTGGGTGTGGTCACAT	ref_5376_missing	36	56	30	27	65	34	49	20	54	37
GCCTTGCACATTACTA	ref_5376_missing	4	7	0	3	4	2	3	0	1	2
TCGGGGTGTTTATTGC	ref_5376_missing	13	18	17	13	9	16	12	11	20	14
CTATTTGGTTAATGCC	ref_5376_missing	6	12	8	14	14	11	5	19	18	12
ACTAGGCGGCAAAGAA	ref_5376_missing	4	11	10	7	13	3	5	2	10	5
GCATGTTGGTAAATTA	alt_3187_upstream	97	23	65	60	29	60	25	65	35	62
CTGTGTATTGTCTGAG	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGGGTAATGTTGT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGCTGTGGGGGAT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCCTGGTTGCATG	alt_3187_upstream	167	34	138	91	57	87	54	110	52	109
TTGCCGCTTGACCAGC	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTCGAGCCCCGGC	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TCTAACACTACCAGCT	alt_3187_upstream	23	8	17	10	8	13	5	18	8	20
TGCGAATTATGCTAAC	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
GAAGCATGGGTCTGCG	alt_3187_upstream	32	6	51	19	13	26	11	24	12	40
CTATAACTCGCTTGGG	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CGCATGCTTGGAATGT	alt_3187_upstream	5	5	4	3	0	6	3	4	6	9
TTCCGCCGCTCGCTTT	alt_3187_upstream	26	6	20	7	2	24	6	17	4	12
AGGTGCACTTTTCGAC	alt_3187_upstream	93	32	94	55	51	81	34	62	41	74
TTTCTATACATCCGTT	alt_3187_upstream	86	33	69	58	31	60	38	64	45	71
AATTCCGTTGCCTCCT	alt_3187_upstream	21	16	17	12	4	19	9	26	10	26
TGACTCTAAGCCCCTT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTCGCGCCTTAAA	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
AACCCCCGCTATCGCT	alt_3187_upstream	4	11	4	4	5	6	11	1	8	5
ACATTCGGCTTTTTCG	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
GGATCGTGGACGCAGT	alt_3187_upstream	82	19	88	64	26	81	21	81	34	92
TATATTTTATGAAACT	alt_3187_upstream	45	14	42	23	18	28	13	28	24	21
ACCCAAAAAGATTCTA	alt_3187_upstream	21	28	15	14	20	17	28	11	29	10
CAAATACGTGAAGCAA	alt_3187_upstream	301	109	306	239	124	291	149	277	133	312
AATGCGTCGGCGCTAT	alt_3187_upstream	257	83	354	193	89	274	97	222	89	261
GGGGTTGATCGTATGT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCGTAACATTCAT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCGTTTTGGGAAC	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CGATCTTGCTAATTTC	alt_3187_upstream	443	144	470	320	153	340	162	309	187	345
CATGTTGGTTGGATTT	alt_3187_upstream	381	115	437	254	139	323	142	341	133	362
CCATGTAATTTCAACG	alt_3187_upstream	56	27	69	53	34	35	44	50	48	43
TGGATACTCCGAGAGC	alt_3187_upstream	44	9	37	29	14	30	18	39	12	35
GCCCATTTTGCCCGGG	alt_3187_upstream	141	38	127	85	40	87	40	78	29	86
AGCAATACGGCAATCA	alt_3187_upstream	50	26	66	37	18	54	26	52	26	47
TTTGCGACCAAGTAGG	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTAGTGGGATACA	alt_3187_upstream	11	2	8	2	1	9	2	8	0	5
GAGCCGAGAGCTCTTT	alt_3187_upstream	96	22	91	67	41	79	32	68	32	76
GTACAGACTGGGCCGT	alt_3187_upstream	13	4	10	8	4	12	4	13	5	15
ACGCTGAGTCAGTAGG	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CATCCATATTGGGATC	alt_3187_upstream	345	115	371	241	141	295	137	314	143	306
GTAAGGTGTCTCGCTC	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTCGATATATTGT	alt_3187_upstream	151	94	192	145	100	157	113	147	126	147
GCTCCTCATTTATAAA	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGCCGATACGCA	alt_3187_upstream	59	24	62	29	25	52	15	39	17	41
GTTACCACAGGGCCCT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
GTTATCAGTTATTATG	alt_3187_upstream	232	96	299	174	92	214	91	209	96	227
GGTCACTTATACGTCT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGTTGGCTGTATA	alt_3187_upstream	18	14	14	5	5	17	7	10	3	15
AACGGGTTTATTATTT	alt_3187_upstream	45	21	51	33	13	46	13	49	23	31
ATAGACGCACCGCCTC	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
CGCCGAGCTCGGCAAT	alt_3187_upstream	12	14	21	15	10	15	11	12	6	11
GTATGATTGGTTCCCT	alt_3187_upstream	0	0	0	0	0	0	0	0	0	0
TCTAACAGCGTGGTTT	alt_3187_upstream	28	12	29	12	7	21	5	18	7	24
GACATTCCGGTCTCGA	alt_3187_upstream	135	37	164	89	50	109	48	111	45	132
TGAACAAGAGTTGCGA	alt_3187_upstream	146	64	212	98	79	146	70	143	68	139
CAATGGGTCTTGCAGA	alt_3187_upstream	45	12	29	30	12	41	8	26	12	24
TGGTTTATGATCAACT	ref_5966_new	2	7	3	9	3	4	0	5	11	1
ACGCTAGTGCCCATCC	ref_5966_new	2	11	5	9	15	6	24	6	19	5
GTATGACTAATCTTTG	ref_5966_new	3	6	6	1	4	1	9	1	8	4
GGGAGCCTATTTCGTT	ref_5966_new	11	34	18	14	28	13	22	19	52	8
AGTGTTGAATGGAATT	ref_5966_new	29	44	38	20	59	27	53	24	36	27
GTGTGCGTTATATTGG	ref_5966_new	7	14	11	10	18	7	14	9	22	9
TTCGACCCTGTATTTG	ref_5966_new	12	12	7	11	13	6	16	5	18	15
TTAACGGTTACTTTGC	ref_5966_new	12	16	8	12	20	6	12	10	21	4
CCTTGGGAGTTCTCCG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TGCTTCATTTGTCAAT	ref_5966_new	33	45	22	33	55	24	55	31	49	24
TGTGTTCTCATTGCCT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GCAACTCAGTTCGATA	ref_5966_new	7	11	7	4	10	3	11	3	10	11
GATTTGGTATTGCAGT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GGATGCATAACGCTCA	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TACCGATTTCCCATTG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GGTTCTGTCCGCTTAT	ref_5966_new	9	19	11	10	16	13	13	4	12	12
CATGCCCTGTTCTCTA	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CCGGCTATTCATATAA	ref_5966_new	0	0	0	0	0	0	0	0	0	0
ACCGCAATATTGGAAC	ref_5966_new	12	28	27	20	53	23	39	16	37	20
CGATTGCGCGATCTAA	ref_5966_new	1	6	2	0	11	2	8	5	7	3
ACTCTTCAAAGCACCC	ref_5966_new	11	16	11	8	21	13	17	15	24	10
CCGGGGACTATACCTC	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GAACATCGGGATATCT	ref_5966_new	5	6	6	6	4	5	7	9	13	6
AATATCCCCAAGCAGT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
AACCACGTGTTGGTGA	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GTTCGGGGGTGGCAGT	ref_5966_new	14	37	24	11	31	11	46	10	28	19
TTGTTGATATAGTCGC	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TTCTCTATATGCGGGT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TCTCTTAGCTGGCTTA	ref_5966_new	36	77	54	50	78	49	101	30	115	43
TTCTGTTTAATCATCG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GATAGGTAGATTAATC	ref_5966_new	60	79	45	42	81	45	95	51	103	36
CAGTCCGGCTTAGTAT	ref_5966_new	17	43	18	27	39	10	34	19	50	20
TGGTTCTCCGGGAGTG	ref_5966_new	0	1	0	0	1	0	0	0	0	0
CATGCTAACCGCGCGA	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CGGTAACCCCTAAGGG	ref_5966_new	6	5	8	6	11	2	5	2	9	1
AATCCGTGGTCTATTG	ref_5966_new	36	37	43	38	40	30	35	41	43	35
TAAAGTTTCGATACAA	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TCACGTACATTTCTTG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CGGCAAGCGGGACTTT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TTTGGGGTCCTTCGCT	ref_5966_new	21	40	28	25	33	11	37	18	33	27
AATGCAGCATATCAAA	ref_5966_new	6	8	2	5	4	4	8	5	7	3
AAGTTGGCAAATACGC	ref_5966_new	13	30	20	15	22	24	27	15	31	16
GGGAACGTCTTTCAAG	ref_5966_new	4	4	2	1	3	3	1	1	3	0
CATAGCAATGGAGTGT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
ACTCTTACGGGCGCCT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
AAAGGCGTAATGTGTT	ref_5966_new	39	77	52	48	91	36	83	35	96	43
ATAATCTTTGATTGCT	ref_5966_new	7	13	8	9	11	0	11	3	5	2
AATGTTACCAGGTCTT	ref_5966_new	7	17	5	6	16	6	17	5	15	10
ACGCTCAACTCTGTAG	ref_5966_new	11	15	11	14	24	14	25	11	21	6
ACATCTGGACCGAACG	ref_5966_new	1	1	0	6	1	0	3	0	3	0
CCGGACGCTACAAGGT	ref_5966_new	3	5	2	0	9	1	8	2	8	0
AGAGTGTGTTTAGGGC	ref_5966_new	3	8	3	1	4	0	8	2	6	2
ACATTTACTCCTGTGC	ref_5966_new	13	38	11	23	31	28	34	10	27	13
CTTGGACGTTCCCGAC	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CCCGTTCCTCCCTGTA	ref_5966_new	2	7	1	2	9	1	5	0	4	2
CCTTGCTACACTGGCT	ref_5966_new	7	6	2	10	14	5	13	5	13	3
AATCAATATTAACATG	ref_5966_new	7	14	20	15	11	11	19	8	18	11
TCTTGTTTTACTTTTT	ref_5966_new	4	14	11	5	15	5	23	11	23	11
CCAGCCTTCACCTAGT	ref_5966_new	3	4	2	1	3	1	4	1	5	3
GCGTTTCAATACCCCG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GGCAGCAATGTAACTC	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TCCGGCTAACCACTGA	ref_5966_new	22	49	21	26	48	24	53	20	42	21
CACATCTGCGAACCGG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TTATTCGTGCTATGCA	ref_5966_new	10	36	11	12	31	4	27	11	19	10
GTCTTTCGGCGGTCCG	ref_5966_new	6	6	2	7	5	8	7	2	10	3
TATATCAGCAGTTTGT	ref_5966_new	9	19	20	10	12	10	31	9	29	12
AATAATACTATAGAGA	ref_5966_new	5	11	4	5	6	3	7	1	6	6
CCTTTTGTTCTGGCTG	ref_5966_new	9	31	15	15	24	10	25	10	36	16
TATTGGACGCTATTGG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GAGGTCGCAGTGCAGG	ref_5966_new	25	41	17	22	33	13	34	16	40	19
GGGGTTATATCAGGTT	ref_5966_new	13	26	18	24	20	11	19	15	18	13
AGAACGTGGTTTACAT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GCAGGCCGTCGATATG	ref_5966_new	10	21	16	7	24	11	21	8	26	8
CCCTCTCGTGCAAGCT	ref_5966_new	2	6	5	1	2	3	5	0	5	0
TAAGATAAGTAGGCTG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CTCGAAGACTAGATTA	ref_5966_new	38	47	42	30	46	27	61	28	65	27
CGTCATTACTTTAGAG	ref_5966_new	22	39	28	20	36	20	27	17	49	17
TTATCTCCGTTCCTGG	ref_5966_new	30	50	44	18	47	34	56	25	69	33
CCGGCAATTGGGAGGG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GGCATGCACAGCAGAC	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GTAAAGATCACACATT	ref_5966_new	5	9	15	5	11	4	8	4	8	3
CACCGAAGGATGATAA	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TAAAGTGACAGTATAG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TACGCCAACTTTGGTT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TACGAAGGTCCTCGTG	ref_5966_new	4	13	5	8	9	9	2	3	13	5
TCATCTAGAACAGTTG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CGCGTGGGTGCGATAT	ref_5966_new	65	96	55	61	101	54	101	47	114	54
TTTCATTTCGCACTGC	ref_5966_new	0	0	0	0	0	0	0	0	0	0
ACTCTATTCGCTGAGA	ref_5966_new	3	5	3	2	6	4	6	8	12	5
CTCCAACGCATAGTCG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CTCTGCTTGTCGATGT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
GTAGTTATGACCGTGT	ref_5966_new	2	0	0	0	0	0	1	0	0	0
CGTGTTTTGTTAGTAG	ref_5966_new	0	0	0	0	0	0	0	0	0	0
TGGTCAACGTGGTGAT	ref_5966_new	30	60	22	29	53	26	67	32	55	31
TTAGTGTCATATGCTC	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CGCATATTTCTTCGTC	ref_5966_new	22	50	24	39	42	27	48	15	39	21
AATATACAAGCAACGT	ref_5966_new	28	44	36	22	50	26	49	24	53	37
GCCCCCCGCGTTCTGG	ref_5966_new	4	40	8	12	30	8	48	10	22	4
TTACTGCTTCCTATAT	ref_5966_new	0	0	0	0	0	0	0	0	0	0
CCTGGAGGCTGACCCC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCCGGCCATTGTCACA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGCCTCAGCCCATATT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TATATGTCTGCCGACT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTTTACCCGGCACATG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTCTGTGCCCCCGCAA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGACCGTTCCTTGAAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CCCTCGCGTTTTCCGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGTCTACTTGCCGTCG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCGTCTGTTTCGGCAC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CATTTTAACTCGACGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCACCCGGCAAGTTTC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ATTTAACCGACGATTT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TAATAAGTTATCTCAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GAGATCCCCGTTGAGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTCGAGTCATCGTTGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTCGTATTCGTCTAAC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CATGATATGCTCTCAC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ACTACAATCGGGCGTA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGTCCGTCATACGGTT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TATAGGAAACAACCTA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTACACTCGTGCAATG	ref_5424_missing	23	85	21	18	51	18	67	21	77	19
AAACTGCGATGCGTTG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AACCACGCTAGTATTA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AGCATGTGTGTCCCTC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AAGCCTCTCGTAAGCA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GGATATAGTCGCCGAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GGTTGACTCGATTAGC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTATCCGCATTTGCTT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GTGATGTATTTGATTT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCTGCGGTTCTTTGGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TATTGTGCTTTTTTCA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCCTTACCTAGATCGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TATTTTTACGCGCTAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TAGGCCGCTACGTATC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ACGATAGTTCGTCTGG	ref_5424_missing	4	5	10	5	4	4	3	3	5	6
CGAGCCGAGCTGGTCA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GTGATATACCAATACG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CGCTATCTTCATTCTC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TACTTCATGCTCATAC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ACGGGGTGCCGCAACC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GAGATATATAACGCAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TACAGTATATGCCATC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCTTAGGAATGGTAGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GTGGTATAATCCTGCC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTGGTGGTCACTGTGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AGCTGTATCACTAAAG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AATATTTTACGCAGCA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CCCGCGGTTCAACTAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CATAAAACCCTCCTCT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTTAAGTGGCGCCCGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTAGTGGCTGGCGATT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CCTTACGTCGGTAGAA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CAGAATACTATTCGGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCCGCGTTTTAGACGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GCGCCCACATATAGCG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTGAAAGTCGTTAGCG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGCGCCGGGCCTTGCC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GCTCTTTTTTCAGATG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GGATCCTGGCTCTACG	ref_5424_missing	19	28	15	22	21	22	27	11	29	15
CCACACTATTGGGTGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AAGAGTCCAATTTGTT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GTAGATGGGTTCGCTA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGTCTCGCTCCCCAGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GCCTTTGTCGCTTCAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTCGCCCTGTCAGTTT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GAGTCAGCACACCAGC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CACCGACTTTATATTA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTTTTGGCTCACGACG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GTATTTTCTTGAAGCC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCCGGTTATTTGTTCA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ACCGAGGCAGTGGCAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CGTTGTTGCCACATCC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GATTCTCAACCGTCCT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GGGGATCCGGCGCTCC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CGCATCATGTCCATGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTTGGTGAAGGCGATC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTTAGATGCTTCTTCG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGATCTCGGAAGACTG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ATACCTCCGAGGATCT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GATAGTTAACAACAGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ATCCCTTGGTTCTTCT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CCTACCTCCTTCTCAG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTACAGGTGGCTTTTT	ref_5424_missing	0	0	0	0	0	0	0	0	1	0
CAATAATCGTCATGTC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCGTGCGATGGTGTAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
ACTTCCCTTAAATCTC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCGAACCAACAATTGG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CGAGTAATACTGCGAT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTACATAGATTGGGTG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGGATAGGATCTAGCT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CTAGAGCTGGCTTGCA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TGTTCATAGTCAGGGG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AAACACGACCAAACAG	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TCGATGACTTCGAGCC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AATATCATCATCTCGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GCCCATCGGCCGGGAC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
GTATTGCCTCCGCGGC	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
AGCCCGTTTATAGTGT	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
CCACTAAGGCTTCCGA	ref_5424_missing	0	0	0	0	0	0	0	0	0	0
TTATCGAAATCGTATA	alt_5679_new	15	19	12	12	17	19	25	15	13	14
ATCGTGTAGCTATGGT	alt_5679_new	0	0	0	0	0	0	0	0	0	0
TACTCTCCCCGAGAGT	alt_5679_new	4	38	5	6	46	8	72	5	45	3
CCACCGACTTCTTCGT	alt_5679_new	0	0	0	0	0	0	0	0	0	0
AGTGGCGTTTTTATCA	alt_5679_new	2	4	3	2	5	1	6	3	5	3
TAGTCGGTAAAGGATG	alt_5679_new	0	0	0	0	0	0	0	0	0	0
CTCTAATTGATGGCTC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
CCTGGGCGTCCAACTA	alt_5679_new	56	72	53	50	65	51	66	38	64	47
TGGGCACTATCAATTT	alt_5679_new	18	25	24	25	32	21	19	25	39	16
ATGTGGAGATCACCGT	alt_5679_new	12	23	12	9	13	8	15	16	22	11
AAGAGTTACTCGGCGT	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GTTATGGTAATTGCCG	alt_5679_new	19	25	18	14	19	13	33	14	27	16
TGTACGGCTCCTGGTA	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GCTTCTTTTTCCATAG	alt_5679_new	70	100	68	75	116	66	93	83	95	59
TGCCGTCCGGCTGTAC	alt_5679_new	45	105	58	43	111	35	100	36	111	32
GTATCGTCTGCGATTC	alt_5679_new	16	14	11	14	14	11	13	10	16	7
CGTATTCAATTCTCAT	alt_5679_new	7	19	16	16	17	19	15	9	14	9
ACGAAATTTCGCTTAT	alt_5679_new	102	125	99	115	146	103	133	75	134	89
CATTTCGCCTGATGAA	alt_5679_new	10	18	4	9	19	11	17	10	23	17
CGTATAAGCCAGGCCA	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GCAATCCGGTGGCATC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
AGTTTTTGCTGGGTCT	alt_5679_new	0	0	0	0	0	0	0	0	0	0
TTATACCATCGATCTG	alt_5679_new	15	15	11	11	17	17	16	19	24	6
CTAATTACTGGCGGGG	alt_5679_new	0	0	0	0	0	0	0	0	0	0
CTGACATCCCTAATGG	alt_5679_new	28	35	29	21	30	12	39	21	40	22
AGGACCCAACAGGGAA	alt_5679_new	82	120	111	87	120	111	138	80	143	72
TGAGAAAGCTACAAAA	alt_5679_new	0	2	1	4	3	5	2	4	2	4
TGCTGTTAGTTTAGTC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GCCAGTTCTAGGCACA	alt_5679_new	1	1	1	1	4	1	5	1	6	0
GCCGTCTCAAGCTCGG	alt_5679_new	0	0	3	5	1	5	4	3	0	4
ATAGGAACGATACCAC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
ATATGGGACCGTCCTA	alt_5679_new	0	0	0	0	0	0	0	0	0	0
CACCATGCATGAATCA	alt_5679_new	174	203	185	147	237	136	239	144	241	169
AGACGTTGTCGTTCCT	alt_5679_new	0	0	0	0	0	0	0	0	0	0
TTGAGTTCTTGGCTCA	alt_5679_new	95	240	123	101	237	99	273	102	276	92
TCCTATTTCATGATAT	alt_5679_new	6	11	8	3	8	6	7	4	8	3
TCGTCTTGTAGCAGGC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GTACACCACCCATTAC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GCGGCGCTTCACCTAG	alt_5679_new	7	17	14	8	16	12	15	14	20	11
CCTCGCATTTCCCTGC	alt_5679_new	10	26	7	2	17	4	30	3	16	4
TTATCGTTTTGGAGTT	alt_5679_new	101	154	122	99	133	115	158	78	178	93
CCATCCGTATTATTGA	alt_5679_new	69	145	91	67	154	72	150	60	145	72
AGGATGGCTCCATACG	alt_5679_new	29	39	39	25	34	18	38	32	25	26
CCTTTCGAGATTGGTA	alt_5679_new	17	9	13	9	18	9	12	7	22	6
CGATGGCTTGTCCGGC	alt_5679_new	6	12	6	7	10	9	11	4	11	15
ATGTCCCTGCTGCTCA	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GACATGCGCTAGCGCT	alt_5679_new	29	43	37	28	34	16	33	15	42	23
TGTATATGCTTATTTG	alt_5679_new	0	0	0	0	0	0	0	0	0	0
ATGCATCCGAGGGACG	alt_5679_new	246	364	309	239	375	269	400	262	370	224
GCACTCGAGTTGCGTT	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GTGTGCCGGCGCGGTC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GCAGATGGTCTTGTGT	alt_5679_new	0	0	0	0	0	0	0	0	0	0
TATTTTCGAGCGTCGA	alt_5679_new	0	0	0	0	0	0	0	0	0	0
TTTATGGTTTTTTCCG	alt_5679_new	0	0	0	0	0	0	0	0	0	0
CCAGTCATTTGGTCTC	alt_5679_new	12	21	27	14	23	10	17	11	27	15
TGTTAGGGGTGATCCC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
TTTGGTAACCCTTCGC	alt_5679_new	0	0	0	0	0	0	0	0	0	0
GTTAAGGCCTTGGTGT	alt_5679_new	3	13	8	3	5	5	16	4	16	4
ACTGTTTCAGCAGAAC	alt_5679_new	15	35	23	13	31	14	42	10	20	18
ATCCCCACCAGCTGTC	alt_5679_new	28	89	65	54	88	41	84	45	78	44
ATATTATGGTGACCGT	alt_5679_new	13	23	17	18	25	10	32	11	35	11
TAGCCCAATTTCTGAT	alt_5679_new	5	29	11	5	9	7	14	8	17	9
GTATACCAGGTTGTTA	alt_5679_new	11	20	8	8	20	11	6	9	13	5
CGGTTTTAATCATTTG	alt_2283_fdr	44	45	47	38	32	39	48	33	34	37
CACGCAATGTCAAGGT	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCACCGCTCGAGT	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCCTTCCCCTCAC	alt_2283_fdr	16	19	25	36	25	16	23	17	28	20
GAACATTTGGCGTTCT	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GTATTAGGAAACGTCT	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTCCCGAGCTGGA	alt_2283_fdr	57	77	71	59	64	60	49	54	67	54
TTCCTGCTTCTACCTC	alt_2283_fdr	0	1	0	1	1	0	0	1	1	0
GCCGAATGCAACTCCT	alt_2283_fdr	24	20	48	32	33	24	42	21	24	27
CCCAATCAGGAGAATA	alt_2283_fdr	48	91	62	48	64	52	66	61	64	42
CCCGTCTAGGGGGCCT	alt_2283_fdr	8	33	15	23	22	8	21	11	23	17
CAACCGTACGTTATTA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGGGCTATTTGGG	alt_2283_fdr	58	67	97	59	70	65	69	86	70	66
CATGGAACTAGGTCTC	alt_2283_fdr	21	15	15	16	11	12	12	22	21	12
CCCTTAGGGTAGACTG	alt_2283_fdr	43	48	65	59	57	48	48	41	61	53
TCATTTTTAACAGTCG	alt_2283_fdr	19	20	22	25	16	18	17	20	22	21
GTGCTTTCACCGTATA	alt_2283_fdr	19	7	13	20	11	10	22	10	11	6
TTTACTCGGCAACTGC	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TGCAGTCACGGTTTCA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GTACAGAACTATTGGA	alt_2283_fdr	41	56	51	46	57	31	53	32	58	39
GAAAGGACCACTCGTC	alt_2283_fdr	38	47	38	34	45	56	42	36	35	29
TCCGCACGATAGAGAC	alt_2283_fdr	5	4	6	4	3	1	6	2	5	6
TACCCTGCTACGTACT	alt_2283_fdr	3	7	4	11	10	11	4	6	9	7
CTTCTATTCCCCATAA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GAGCTTATGTACAGGC	alt_2283_fdr	34	62	58	38	44	32	46	41	49	36
TTGCGGTTCAGAGGTC	alt_2283_fdr	0	3	2	1	1	7	4	1	1	1
GATTGATTGGTCGGAA	alt_2283_fdr	58	68	63	46	65	40	66	48	55	48
GTTGTAGTTGCTTTAT	alt_2283_fdr	30	39	61	50	33	31	59	38	48	31
GGCGCTTAATTTTTCC	alt_2283_fdr	22	16	15	21	17	16	19	18	18	20
AAATTTAGGCTCGATC	alt_2283_fdr	12	15	13	11	6	6	4	9	14	6
CAATATCTTTGTGTTG	alt_2283_fdr	10	19	21	16	17	21	14	16	16	16
GTTGACTACCACACGC	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTTGTTTGTGTGA	alt_2283_fdr	15	17	23	16	21	14	18	22	26	17
AAGCTATCTTTCATCT	alt_2283_fdr	7	10	12	12	6	3	4	4	3	6
AAATCCCCTCGGATTT	alt_2283_fdr	4	5	8	7	8	7	5	7	2	7
CAGCGACAGTATGTGT	alt_2283_fdr	4	18	7	8	23	6	17	8	18	7
CTAGTGCGGCTCGTCT	alt_2283_fdr	16	12	10	15	17	12	19	9	11	5
GCCTGATTTTATTCTG	alt_2283_fdr	9	13	10	12	10	7	10	18	16	12
GTCGGGAATCAGCCCA	alt_2283_fdr	25	18	20	26	19	22	25	21	22	16
CACTTACACCCCAGTT	alt_2283_fdr	26	31	32	18	41	22	28	22	30	27
GTTGCTACAATCGATA	alt_2283_fdr	94	115	151	89	97	108	91	99	99	80
TCTCAGTGTGTTGTAC	alt_2283_fdr	8	13	11	10	11	11	11	6	10	9
ATCTTCGATAGATCGA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGTTCTTCGGCAT	alt_2283_fdr	8	8	1	5	8	5	14	6	11	4
CCATGGGGTTTTAGTA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
CTGATCGTCCGATTTC	alt_2283_fdr	71	91	81	61	63	66	65	71	68	58
GAGTCGTTCCCGTGGG	alt_2283_fdr	6	10	5	5	7	18	9	6	14	8
TTCATGTGTATGTGAG	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
CGGGAAGAGCAGTGGG	alt_2283_fdr	82	80	95	80	66	65	71	80	88	51
TGATATCGGTGTACAG	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
AAATTACAAGTTATTT	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GCTACAACGTACCTAG	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GGTCAAGTACGCCTTT	alt_2283_fdr	4	3	11	6	7	6	5	10	4	10
TTTCCTGTGGACAGTG	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTCGTTTCTTTAT	alt_2283_fdr	23	20	24	17	14	22	15	12	19	20
GCTGTTTTAATTGTCC	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TCCTGCTATCCAGCAT	alt_2283_fdr	13	15	17	14	29	24	20	15	17	15
ATGTAACCCAGATTAT	alt_2283_fdr	60	45	73	61	53	45	52	41	49	36
ACACTCCGAGTCCTAG	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
ACTCATTTGCATGACT	alt_2283_fdr	16	30	30	21	35	22	29	20	28	26
TTTATTTGGGAGCCGA	alt_2283_fdr	44	39	39	44	39	40	39	37	50	26
GTGACGAGTCAGGCAT	alt_2283_fdr	37	43	29	30	35	32	29	28	28	32
TGTTGGTGCCTGGTCA	alt_2283_fdr	7	8	8	5	6	4	9	8	10	7
ATATGTGTAGTCATTC	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TCGTAGGGCCGTGGTC	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTAAAGGTCCTCC	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGTACTCCTTTTT	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
ACATTCAAAAATGGGG	alt_2283_fdr	19	16	31	16	14	18	8	15	22	11
TCCTTGAGTTTCTGAC	alt_2283_fdr	6	9	8	0	6	2	11	1	10	4
CCTTGTGTCGGGGAGA	alt_2283_fdr	80	98	93	85	93	68	93	95	80	66
ACCTCGACTATAATAT	alt_2283_fdr	12	11	22	17	25	22	16	26	28	16
CATTGTACGTCTCAAG	alt_2283_fdr	22	46	35	28	39	21	49	31	31	32
CTCATGACCGGCTATA	alt_2283_fdr	6	11	9	8	8	3	11	9	15	5
GTCTCTAGGCAATTTA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATCGCTGTTAGC	alt_2283_fdr	29	25	27	15	26	15	21	19	22	16
TATATACATCTGGCCG	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCTCCCCGTATAG	alt_2283_fdr	11	21	20	20	41	10	32	15	41	11
TTTGGTTGCCCGATCC	alt_2283_fdr	47	53	65	49	39	45	60	60	54	49
GGGTAGGTGAACGGTA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGTTATGGTTGTT	alt_2283_fdr	6	5	4	5	2	2	3	3	2	1
CGAATCTTTCAACACA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TACAGGAAGCGCGGTA	alt_2283_fdr	11	15	19	20	18	19	13	13	17	18
GGGTTGCTTCCTTAAA	alt_2283_fdr	1	1	1	2	0	3	2	0	3	0
ACCCTGATTTTGAGCG	alt_2283_fdr	52	49	70	52	59	52	52	43	50	37
CTATCTGCCTTTGGGC	alt_2283_fdr	2	4	6	10	3	5	4	5	7	6
TTCTTTCGCTTGAGAG	alt_2283_fdr	2	7	6	9	2	4	9	6	10	4
ATGTTCAGAGGTTTGG	alt_2283_fdr	22	17	34	32	23	21	26	39	32	24
GGGCACCAGGATCCTA	alt_2283_fdr	21	21	29	18	34	25	34	25	24	32
TGGTCCTAGAAGATGG	alt_2283_fdr	41	24	33	35	32	27	35	20	29	38
GCAAGTCCTTCCATAA	alt_2283_fdr	32	40	50	46	45	42	36	31	26	34
TCATCGCTGCGTCCCG	alt_2283_fdr	40	42	51	57	50	50	47	57	54	49
GATCAATTGCTCGATG	alt_2283_fdr	132	152	180	147	161	125	146	145	151	113
TTTATTCATTGCAGTA	alt_2283_fdr	30	26	33	26	33	28	21	18	19	26
TGTTCGTTACCAGCTC	alt_2283_fdr	27	27	33	29	38	17	40	20	36	18
GCCTACTGTCGCGTTC	alt_2283_fdr	47	65	33	28	94	35	96	34	82	30
ACTATGGGTTTGCTAG	alt_2283_fdr	11	17	21	18	18	7	20	19	16	27
AGATCGTTTGTTCAGG	alt_2283_fdr	4	6	7	10	4	9	4	8	8	7
TGGTACGGACGGTTGG	alt_2283_fdr	5	7	2	5	5	4	1	2	2	3
GCACCTTTAACATTTG	alt_2283_fdr	34	41	33	38	38	24	47	26	35	29
ATGTGATCGCCTTGAC	alt_2283_fdr	23	21	19	13	6	13	13	17	21	11
GTATCGGTGACCTGTC	alt_2283_fdr	139	144	182	161	156	134	156	149	163	138
ACACAGGGTAGTTCAA	alt_2283_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGTCCCATTTTTG	alt_2283_fdr	22	10	19	16	14	16	17	9	14	11
TGCGTCTACGAATCAT	alt_2283_fdr	18	26	29	21	33	28	36	22	24	25
GGATTAAGTCTCTGTG	alt_2283_fdr	12	6	6	13	12	7	11	2	10	4
TAGCATTCAGCGCCCC	alt_2283_fdr	1	2	1	2	2	0	1	0	1	1
ATGCTACAGGATAAGC	alt_2047_reverse	22	12	29	26	12	16	22	11	14	27
GGTCTTACGATTTGAC	alt_2047_reverse	5	2	12	4	4	12	8	7	5	2
ACTCTCTTGCCCAAGT	alt_2047_reverse	32	13	34	30	24	25	39	36	25	31
TCAGATATGAGGTTAA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCCTGTCATTGGG	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
ACACTGTAATTGCAAT	alt_2047_reverse	27	24	19	25	15	21	14	24	22	23
ATTTCTAAGACTTTTT	alt_2047_reverse	204	119	222	199	142	179	136	192	126	188
GCGGTATACCCTTAAA	alt_2047_reverse	153	93	192	144	113	124	100	112	107	130
TTCTGCATGCAATATC	alt_2047_reverse	128	95	160	159	94	140	97	120	85	130
AGGTCTTTCTAGGAGT	alt_2047_reverse	98	65	106	109	68	86	87	83	70	64
TCACGCTCAATGACGA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
CAACTGAATATGAGGC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TAAGGATTCCGTTTAC	alt_2047_reverse	16	14	26	23	17	26	17	15	23	14
TACGAATGCGCCACGT	alt_2047_reverse	29	24	31	45	16	29	15	27	18	27
TATGGTGAGACAGTAG	alt_2047_reverse	12	5	13	12	3	16	9	9	7	8
AGTCTCGGCTATTCAC	alt_2047_reverse	5	7	12	7	2	5	10	8	8	9
TCCTCTGTTGGTCCAC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTTATTTTCTGTA	alt_2047_reverse	32	24	36	38	25	28	26	25	13	35
CGTTGAAGTTCCTCGC	alt_2047_reverse	44	28	47	41	25	48	26	32	35	36
TATATTTTCAAGATGC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCTCCCTTATGCA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTGAAATACAGTC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
AGACTTGAGATTCCAC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
CATTGGTAGGGCAAAC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGCAATGAACACA	alt_2047_reverse	23	18	32	25	17	19	22	23	18	27
TAAAGTTTAACCCGTT	alt_2047_reverse	32	29	45	37	24	44	26	20	21	26
CGCAGCCTGGGGATCG	alt_2047_reverse	359	298	472	428	327	353	343	384	348	336
AAACTGTTCTCTAGAA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TGACTTAGGCCTATCG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GATTTTCGGTCGTCAC	alt_2047_reverse	6	2	15	8	2	11	8	6	3	6
TAACCTTCATTGCAAT	alt_2047_reverse	23	15	18	15	8	17	17	16	11	21
GTCGCATAGTCCGACG	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TTATACGTGTCTTTAA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TAAGGTTGATTTCTCT	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TCGTCAAGCATGGCGC	alt_2047_reverse	36	30	52	42	26	54	23	38	25	31
GCCGGTATCGTTAAGC	alt_2047_reverse	14	14	15	9	7	11	13	13	15	11
TCTTTTGCATGTGCTT	alt_2047_reverse	64	41	109	83	49	60	47	77	49	72
CGTGTTAGCATACGTG	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
GGACTGAGAAGTGTTT	alt_2047_reverse	8	7	15	13	6	7	7	7	12	5
TTCCACGGGCCCGGGA	alt_2047_reverse	40	18	37	28	18	25	11	22	18	24
CAGTCACACACCGCCT	alt_2047_reverse	19	15	20	11	26	14	16	19	24	15
TATTCACATGTACATC	ref_2047_reverse	36	51	40	38	44	27	45	33	56	37
TTTAATTTCTTTATTT	alt_2047_reverse	176	74	193	192	82	174	67	181	87	137
GTACAGAGATCGGACA	alt_2047_reverse	6	6	15	9	6	10	12	6	3	10
GTACATACCCTTCTCG	alt_2047_reverse	30	13	22	18	19	11	16	22	27	14
AAACGAACACTTCGTG	ref_2047_reverse	11	8	16	10	17	19	10	7	6	12
CATGATGTAGCCCGGA	alt_2047_reverse	68	52	88	62	60	55	52	58	47	65
TCCAACAGCTGGGCGT	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TTGTAGAGGAAAGGCC	alt_2047_reverse	16	15	16	34	15	30	11	19	20	26
CTGTCATATCCGACCC	alt_2047_reverse	47	28	58	56	38	53	40	36	36	62
ACTACCGAGTGGCTGA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCGGTATTTCCTC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
GGCATAAGACCTCAAG	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCCTCCTTGTGCA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTGTTTAGCTCGA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
AAAATATTGCCCTTTT	alt_2047_reverse	38	18	33	36	17	29	22	21	16	27
ATTGCTCTTGTCAGCT	alt_2047_reverse	57	36	72	38	32	51	27	40	44	47
GGCTGTTAATAGATTT	alt_2047_reverse	29	13	36	34	9	27	9	25	23	21
AGCTTGGCTGTTGCTC	alt_2047_reverse	56	41	59	67	33	58	48	46	49	49
CGTTCTGGGACTCAGT	alt_2047_reverse	496	339	633	539	342	479	375	545	349	442
TGTAGGTTATCCGATC	alt_2047_reverse	46	29	57	58	19	41	40	43	35	55
GTCATCGATACGCTCG	alt_2047_reverse	48	42	53	53	37	47	39	52	37	30
ACCTTGGGTCGCATCC	alt_2047_reverse	48	38	59	57	38	38	37	51	40	47
GCTGATCTTTCTAGGG	alt_2047_reverse	18	12	23	21	22	24	19	21	18	24
CTCTGGCTCTTGGCTT	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTGCAACGGCCCG	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
GAGACCTTTGGTCGCG	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TCGTATGTGGACCTGA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCTTGAGATTCCA	alt_2047_reverse	73	45	79	69	52	69	66	55	46	66
TTGCACGCGCAGGGTG	alt_2047_reverse	15	6	26	10	15	7	7	14	11	4
CCGCAAGGGAATCTGC	alt_2047_reverse	0	2	9	1	1	2	3	3	0	5
TTAGGGCAATCCGACC	alt_2047_reverse	30	18	41	36	22	37	24	36	29	26
CGTAATTTCCTCTGCG	alt_2047_reverse	8	7	5	4	12	8	9	6	10	6
GTATACCGTCACCCCT	ref_2047_reverse	16	13	16	9	16	9	15	14	12	11
CCGTTAAGGAACGGAG	alt_2047_reverse	45	39	57	49	43	60	52	40	40	41
ATGCATTGTCTTAAGT	alt_2047_reverse	2	4	4	7	7	2	3	5	2	3
CTTCGCGGTCCAATAC	alt_2047_reverse	22	7	16	12	16	18	16	12	21	17
ATTAATTTCTTTATTT	alt_2047_reverse	1	0	0	0	0	0	0	0	0	0
AGGGCGTCTCTCACTG	alt_2047_reverse	56	49	60	56	47	54	50	62	39	55
ATACTCGGACACGTAA	alt_2047_reverse	10	5	9	7	8	5	3	4	3	13
CAGCCTGTACGAATAC	alt_2047_reverse	47	51	69	47	58	47	62	44	57	49
TATCCTCGGCTTCTTG	alt_2047_reverse	101	66	101	122	66	104	70	70	59	72
CTCTTTAGTTTAGGTT	alt_2047_reverse	3	3	6	5	1	1	2	8	3	8
CGCCGAAATTCTACAT	alt_2047_reverse	317	195	348	323	184	279	186	255	206	246
GACAGTTCTATTGGGA	alt_2047_reverse	0	0	0	0	0	0	1	1	1	1
GCGTCGTTGTGCACTC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
CTACTTTAAGTAGTGC	ref_2047_reverse	71	65	85	92	49	64	48	64	48	61
TGAGTAATAGGTTAGT	alt_2047_reverse	228	133	260	217	124	206	157	206	148	189
CACTTTTTTACGGTTT	alt_2047_reverse	150	68	184	157	93	128	66	129	82	142
AAGTCATGTTTCGGTG	ref_2047_reverse	32	24	33	29	14	28	15	28	18	18
GAACTATGGCGTTGGA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TTCTCGGTACGCCTGC	alt_2047_reverse	52	41	57	42	39	48	37	40	31	25
CACGTTAGTTCCTTTT	alt_2047_reverse	1	0	0	0	0	0	0	0	0	0
GCTCAACGGGGTAAGG	alt_2047_reverse	19	9	12	15	8	8	8	13	11	16
TTACGATGACGGACTG	alt_2047_reverse	10	6	10	13	3	6	10	9	4	4
TTGTAGTTAGGCGTGC	alt_2047_reverse	17	12	20	15	12	11	11	16	14	8
TCCCACTGAGCTACTG	alt_2047_reverse	30	23	24	44	19	28	29	41	19	30
AAAACACGGATTAGTA	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCTACTATGCGGT	alt_2047_reverse	56	33	49	57	50	60	58	57	37	57
CTGGTTGAGATCTAGT	alt_2047_reverse	33	12	29	30	11	9	12	33	10	18
CACGGTCGCACGTGTG	ref_2047_reverse	21	42	23	23	46	13	45	15	53	26
TTATGGTGCGACTAGC	alt_2047_reverse	20	14	36	28	22	26	25	22	28	19
GCCCTCTGGTGCGCTT	alt_2047_reverse	108	58	129	109	56	102	93	88	78	95
GTGGGATAACTTTTCT	alt_2047_reverse	48	37	62	60	37	60	42	48	45	53
GATGGACCGGTGATCG	alt_2047_reverse	38	19	46	60	25	46	29	28	28	24
GGTTATCTGGGATGTT	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGGAGTCACCGAA	alt_2047_reverse	80	66	72	88	69	73	60	66	51	53
CTTAATGGTGGGTTAT	alt_2047_reverse	96	45	126	91	62	80	58	78	83	92
TGATTTCGGGAACGCC	alt_2047_reverse	75	48	77	78	51	73	60	74	48	71
GTTATCAAGATATTTT	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
CACTCTTATTCTACAC	alt_2047_reverse	0	0	0	0	0	0	0	0	0	0
TACAATACTTCTTGTT	alt_2047_reverse	14	9	19	13	5	10	1	14	10	9
TCATTTTCTCAGCTTT	alt_2047_reverse	20	15	28	24	9	16	12	29	14	19
CGCATCTTCGCACGGT	alt_2047_reverse	16	11	19	16	12	15	7	11	16	7
AATACCTTGGAGTAAC	alt_2047_reverse	20	35	43	37	24	15	22	25	22	28
CGCTTGTGTCTTAGGT	alt_2047_reverse	47	32	52	51	35	41	40	40	46	39
ATTTCCCGCGGGCGTC	alt_5868_new	35	58	38	29	65	25	55	31	56	28
GAGTTGTTCGACTATT	alt_5868_new	4	25	10	7	28	16	12	10	26	11
GTTTTTCCCACCTGAT	alt_5868_new	51	112	71	52	115	54	116	57	111	32
TTTTCGTCGCAGCCAC	alt_5868_new	8	17	16	6	10	13	10	7	21	5
CCAATAATTGCAGATC	alt_5868_new	16	31	11	18	30	15	25	15	36	14
ATCTAACGTGATTCCC	alt_5868_new	23	50	31	23	54	23	68	39	47	20
GAGAACTCGGTGCTCT	alt_5868_new	24	45	25	29	45	31	54	27	51	34
TACCGACTCTCGCTCG	alt_5868_new	44	108	54	45	94	30	96	50	90	31
GATTATTTGAACTACT	alt_5868_new	0	0	0	0	0	0	0	0	0	0
CGACCGAGTCATTGAT	alt_5868_new	6	15	9	9	11	4	7	4	13	4
TTTATGCGATTACATC	alt_5868_new	42	26	27	29	31	27	35	26	45	38
GGGTATGTGAGTTGTA	alt_5868_new	1	2	2	1	3	1	4	1	0	4
TTGGGGCCTTAGATAG	alt_5868_new	8	14	12	8	9	7	26	7	15	3
TCCCTGGTTTGGCTCG	alt_5868_new	9	14	7	1	7	8	6	6	14	6
TCGTATCCGGCTACGT	alt_5868_new	7	17	7	10	12	9	23	16	23	12
GCTTGCGCTGTACTTC	alt_5868_new	24	58	34	26	44	29	28	19	48	21
CATTTGGGCGTTAAAT	alt_5868_new	20	39	18	16	36	20	20	21	34	10
TTAGGCCCGTCACTTC	alt_5868_new	5	5	5	7	7	4	9	6	13	1
TAAGTGGTACATTTAT	alt_5868_new	11	19	22	21	33	15	28	10	24	10
TTACGGTAAGATACAT	alt_5868_new	0	0	0	0	0	0	0	0	0	0
CCTCATGACTCCTGTT	alt_5868_new	5	7	3	5	12	5	8	0	8	6
CCGTTGCCGGTAGTTT	alt_5868_new	13	30	10	9	19	14	25	13	22	5
TTCGGATATTGCTATC	alt_5868_new	7	18	9	2	13	4	27	6	25	15
CTAGCGAAGCGGTATA	alt_5868_new	76	117	88	71	113	56	124	54	120	70
TGCTTGTGCTGCGTAT	alt_5868_new	0	0	0	0	0	0	0	0	0	0
GGGTCTGTAACGTAGT	alt_5868_new	0	0	1	1	2	1	1	0	1	1
CGCGAAAATATGAAGC	alt_5868_new	1	6	2	1	6	1	9	4	6	1
ACCGATTTATTTAGTT	alt_5868_new	3	2	4	1	9	2	13	2	0	9
AGTCGCTCGAGCAGTC	alt_5868_new	31	41	31	29	73	26	48	27	46	25
AGCCAATATAGGGTCC	alt_5868_new	9	25	6	8	20	9	21	7	21	7
GACTAAAGCTGGCCTC	alt_5868_new	25	37	14	8	21	8	23	11	29	21
CCTCAACGGTGAGCAC	alt_5868_new	1	20	3	6	19	0	16	4	18	3
AAATTCGGACTGGCCC	alt_5868_new	30	47	44	26	41	22	44	36	48	30
CTATTTGAATATAATG	alt_5868_new	6	20	3	9	8	10	3	7	6	3
CAAACCTCTTTTATTG	alt_5868_new	6	21	19	9	28	7	29	8	19	6
TCGGCTTTTCTCGTTC	alt_5868_new	7	29	22	11	20	20	20	14	23	14
TAGCTCCCTTCAAGGT	alt_5868_new	6	18	6	6	16	5	20	9	15	8
GTAAATTGTCGTAGCT	alt_5868_new	23	32	24	13	39	29	36	25	50	14
TAAGCCTCGGGCCACG	alt_5868_new	11	26	13	14	34	15	25	12	25	8
TGGGCTCGGGGGTGCG	ref_5868_new	47	92	69	45	96	52	79	52	78	49
TTTTATAACTCCTTAA	alt_5868_new	1	3	0	3	1	1	3	0	1	0
TGCTCGATTAATTCTC	alt_5868_new	18	24	18	13	30	18	27	11	33	17
TCTTTCTGGTGGGGCT	alt_5868_new	18	20	15	12	16	12	23	17	32	7
CGATTATCCAGGTCAG	alt_5868_new	21	40	21	18	28	14	37	22	37	13
ACTGTTCTCAACTTTG	alt_5868_new	0	0	0	0	0	0	0	0	0	0
AAATGGAGGATTACCG	alt_5868_new	0	0	0	0	0	0	0	0	0	0
CGGACAATGGCCTGTT	alt_5868_new	26	32	20	16	30	24	42	20	38	21
GGGTTAGTGGCCTTTA	alt_5868_new	93	160	109	80	175	91	193	78	204	87
CTATTGGCATGGGACC	alt_5868_new	57	93	52	48	85	37	74	39	106	51
AGTGGCGTACTCTCTT	alt_5868_new	0	0	0	0	0	0	0	0	0	0
AGTTGGCACATTATGC	alt_5868_new	6	17	17	6	13	12	18	10	17	10
TCCGCCACCCATACGA	ref_5868_new	21	49	42	38	39	28	67	35	54	31
CTTAAGCAATCCTCGG	alt_5868_new	2	10	5	8	8	7	8	8	9	5
TAGCAGCGGTATCCGT	alt_5868_new	1	4	2	1	9	1	10	1	5	0
GGGGGGTGCTTGTGCT	alt_5868_new	62	96	46	49	127	58	116	48	133	54
CCTTCAGTTCCGTTTG	alt_5868_new	5	26	13	12	20	6	28	8	36	8
GCGCCACTGTCCTACC	ref_5868_new	119	189	117	132	208	100	211	99	179	114
GATTTAATGCCAATAA	alt_5868_new	99	118	85	70	117	74	146	66	120	69
CGGTGTCCTGGCCAGG	alt_5868_new	1	1	0	0	4	0	0	1	5	1
CCCTTTATTGACCTAC	alt_5868_new	10	26	8	3	32	7	33	6	24	8
TTTGCATGTGGTCTTG	alt_5868_new	3	2	0	0	4	0	2	3	4	0
ACGGGCATTAGTGATA	alt_5868_new	18	47	25	14	42	21	51	21	33	12
CCTTTGTCTGCCTACC	ref_5868_new	131	189	130	109	235	105	228	126	245	103
CTCCTAGAGAAAGTCT	alt_5868_new	4	23	5	8	13	9	14	5	21	5
CATTACGGAAATGGTG	alt_5868_new	0	0	0	0	0	0	0	0	0	0
CCTCCGCGTTCGCTCT	alt_5868_new	9	16	22	19	13	8	23	14	14	12
TTCCCGCGGATACAGA	alt_5659_new	9	22	10	7	23	9	26	15	29	9
TGACTACAGTGCTCGT	alt_5659_new	8	21	14	14	24	12	19	8	19	9
ATTGCTGTAACCGGCT	alt_5659_new	149	234	193	183	261	122	260	138	269	115
TATGTTAGTTCTTCAG	alt_5659_new	12	28	14	13	16	12	30	5	12	8
TGTACGGCTCAATTAA	alt_5659_new	9	18	10	9	9	9	13	10	15	6
ATCGCCGCTACACCTG	alt_5659_new	0	0	0	0	0	0	0	0	0	0
TGGAACTTGCGCTCTT	alt_5659_new	12	20	16	13	16	6	27	14	26	15
TACCTCTCGGAAGGTT	alt_5659_new	23	42	27	31	44	33	42	14	50	19
GTTTACCTGCCTACAT	alt_5659_new	56	98	45	58	120	50	106	46	110	63
TGGTTATGCTATATTT	alt_5659_new	5	16	13	10	27	4	21	7	21	10
CGCAATCTACTGTTCT	alt_5659_new	1	5	2	2	5	1	2	3	2	1
TCATAAAGTAAAGTGA	alt_5659_new	33	50	35	37	44	31	74	30	50	20
AGGCTACGATGAACCT	alt_5659_new	32	28	30	17	34	20	40	24	49	11
CGTTTACTAATAAGGT	alt_5659_new	11	27	17	8	29	6	34	9	22	9
TTTACATTCTGTTGTG	alt_5659_new	14	27	11	11	26	5	39	19	23	14
ACCACCGGTATTCTTT	alt_5659_new	20	61	23	21	59	22	41	12	50	20
CCTGTGTTTGACCTGC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
GACACTTCTCGTCTAC	alt_5659_new	10	28	10	9	14	8	17	7	28	6
TGTTTTGTTTTTATAC	alt_5659_new	7	20	18	12	32	15	18	13	18	7
CAGTTCAGGTGCTCCC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
TATTCCGATTTATTTG	alt_5659_new	3	4	0	7	4	5	5	4	2	1
GCCCGGCAGCAAAACC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
ATGCGCTCATCAGTCC	alt_5659_new	21	16	17	11	23	12	20	8	21	12
ATGCTCATAATTCCAT	alt_5659_new	0	0	0	0	0	0	0	0	0	0
ACGCGATTATTCCGAA	alt_5659_new	14	24	15	24	17	7	21	11	17	10
CGACTAATCGGTTGCC	alt_5659_new	6	20	10	6	26	11	29	4	34	2
TCTCGCTCGCCCTGCC	alt_5659_new	5	15	12	2	9	3	8	7	11	5
TGTCCCCGGATGCGCA	alt_5659_new	11	27	11	12	22	9	19	7	43	10
GTCTGCAGGCTCCGCT	alt_5659_new	12	24	24	9	32	19	23	7	19	6
GGTTTGCCGGGCATTA	alt_5659_new	25	27	22	11	36	22	44	19	40	24
GCTTCCTCGCTACAAG	alt_5659_new	121	208	117	114	204	106	209	108	242	116
CGGACGGAACCCCTAC	alt_5659_new	1	3	3	0	0	0	2	4	0	0
TCATGGGTCTTACCAT	alt_5659_new	35	103	41	38	108	33	101	43	93	33
TGCTGACCCGCAGAAG	alt_5659_new	80	142	99	67	129	71	122	60	129	70
TTGCATGCCTTTACAG	alt_5659_new	13	20	18	17	25	11	25	19	32	15
AGAGGAATTTCCTTAA	alt_5659_new	107	232	138	112	212	119	253	109	278	109
CAATGGAAATCGCTTT	alt_5659_new	24	44	29	19	37	28	55	29	54	22
ATTGAATTTTTGTGTG	alt_5659_new	39	51	32	25	50	19	46	17	41	23
AAACTGCGATTTCCAT	alt_5659_new	14	15	25	9	22	9	11	7	13	8
CGACATTACATATTTT	alt_5659_new	19	68	46	30	80	36	58	37	59	34
CTCTTAGTAACACGAA	alt_5659_new	19	31	24	12	32	15	40	22	26	10
AGAAAAAAACGGGCCC	alt_5659_new	21	39	26	21	28	19	52	33	40	23
GGGTCGTGAAGAAAGC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
CCAAATCCTAAGCATC	alt_5659_new	5	12	2	3	11	6	15	4	10	1
CATGTGCACTTCCACT	alt_5659_new	0	10	0	1	1	1	8	1	10	3
GGTTCCTTGTGCACGT	alt_5659_new	20	27	22	21	27	16	29	10	39	19
TACACGCTAAGTGGAT	alt_5659_new	34	64	35	35	45	31	69	30	63	22
GTGAGTACAATACTTG	alt_5659_new	16	26	36	20	34	10	28	10	20	22
ACAAGTTGTATGGCTC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
CGTCCTAACGTTGTTT	alt_5659_new	0	0	0	0	0	0	0	0	0	0
CGGTATTTTGTTCGCT	alt_5659_new	0	0	0	0	0	0	0	0	0	0
TGCTCGCTCATTCAGC	alt_5659_new	67	117	84	62	96	79	113	62	125	50
ACCTTCAGGTATCATT	alt_5659_new	0	0	0	0	0	0	0	0	0	0
ACGTACGCGATTCCGA	alt_5659_new	0	0	0	0	0	0	0	0	0	0
GGTATAGGCCACCACC	alt_5659_new	5	10	3	6	13	11	17	9	14	12
GTTATTAAGTCTGAAA	alt_5659_new	21	22	24	26	38	15	30	16	33	15
TGGTTTAGTAAGTTGT	alt_5659_new	0	0	0	0	0	0	0	0	0	0
GTCACCTCGTCGCCGT	alt_5659_new	106	142	91	84	137	86	150	88	158	63
CCGCCATGTCAGTGCA	alt_5659_new	31	42	33	35	51	24	53	20	52	33
GTTATTATATGTAATA	alt_5659_new	47	64	57	27	64	31	76	42	67	38
CGTTTCCGCTCTGTGA	alt_5659_new	44	117	88	64	109	60	145	53	130	63
CATCCTTATACCGGGC	alt_5659_new	11	21	20	13	19	5	37	8	28	10
TTCCAGTTAATGTTTC	alt_5659_new	16	22	20	11	22	17	23	14	33	10
CGGCTCGCCATTCGAT	alt_5659_new	18	22	25	15	27	25	24	19	27	17
TCGTATGCTTGTGTGC	alt_5659_new	3	19	3	6	14	7	19	12	18	8
CCCTGGTCCTTCTAAC	alt_5659_new	8	34	9	13	31	14	35	5	37	12
GTGCTAAGCCAAGACC	alt_5659_new	23	42	22	24	48	18	40	14	43	15
CGATGTACAAGTAGCC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
TGAATTCGGCACGGTA	alt_5659_new	49	82	47	43	67	57	73	28	104	34
TATCACGGATTGTATT	alt_5659_new	37	55	50	42	55	37	72	23	74	29
AAGAATCGCTATCTAA	alt_5659_new	23	65	35	22	54	20	59	39	57	24
GATACTATAAAAACAA	alt_5659_new	0	0	0	0	0	0	0	0	0	0
AGTATTAATTTTCGGA	alt_5659_new	0	0	0	0	0	0	0	0	0	0
CAACTAATAATTCTGA	alt_5659_new	0	0	0	0	0	0	0	0	0	0
TATCCCTGGCAGGATG	alt_5659_new	6	27	11	9	27	10	32	13	28	14
GTCTACACAGGCGGCC	alt_5659_new	51	71	60	38	68	50	73	37	71	25
TAGTCTTCCAGGTGTT	alt_5659_new	63	94	55	57	118	44	104	59	106	65
AGCCAGTTTTGACGCT	alt_5659_new	17	28	16	22	23	11	32	11	27	12
TGCTTGTTAGTTTGGG	alt_5659_new	3	7	2	6	8	3	8	3	6	4
GAACGCTGCGGCTCAA	alt_5659_new	7	14	9	2	12	7	13	8	8	4
TAATTTCGTGGGTAAT	alt_5659_new	8	15	18	9	17	9	18	17	25	6
GTCTTTACTTTGGAAT	alt_5659_new	1	3	3	2	4	3	5	2	6	0
TCCTACTCATTTGGCT	alt_5659_new	3	11	5	3	11	3	9	8	7	5
TAAGATCTGTCGTTGG	alt_5659_new	8	15	9	10	14	10	13	5	17	5
ATGTCAACTCCAGGCC	alt_5659_new	4	10	1	3	7	2	4	1	6	1
GACAGCACTATGCGCG	alt_5659_new	0	0	0	0	0	0	0	0	0	0
CAGACGGCCGTCCGCT	alt_5659_new	9	6	10	2	18	6	9	6	17	5
GCCCCCTTTGAGTCCA	alt_5659_new	12	9	6	10	9	9	15	9	11	7
CTGCACTGTTGTCATC	alt_5659_new	0	0	0	0	0	0	0	0	0	0
GTTCTTACCGTCGGGA	alt_5659_new	5	15	16	9	40	8	22	11	23	6
CTTCGGTTCGGGGTCC	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CCGCAGAGTCCGGCTA	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
GACCCCGTTTACAATG	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
ACATTAGCGGACCGTG	alt_3975_upstream	47	15	49	43	13	48	25	34	18	33
TCGGGTCAATTGCACA	alt_3975_upstream	243	91	298	232	79	265	116	201	108	221
GCGTGATTGGAATAGT	alt_3975_upstream	52	18	76	50	17	65	21	81	24	52
GGACAACGGTTCCAGA	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCATATCTATTAT	alt_3975_upstream	527	208	690	596	245	502	234	616	249	436
GCTTCACCTTAATCGT	alt_3975_upstream	310	147	458	330	125	313	134	311	135	318
CGGTTCCCGCTGGTAG	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CAATCGCCTTGTTACA	alt_3975_upstream	42	19	58	53	20	51	21	29	11	35
CTGGATTATATAACGC	alt_3975_upstream	39	11	69	49	20	44	22	47	12	41
GTGTGTGTACCTTCTC	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
TATAGCTCTTGTCCAC	alt_3975_upstream	250	109	283	288	119	256	113	234	101	209
CTAGTTCGCTTTTACC	alt_3975_upstream	108	54	125	118	57	104	43	113	46	79
TAATATGAAAACCTGG	alt_3975_upstream	20	9	47	37	8	24	14	37	12	20
TGGCGGTTGACCCTGG	alt_3975_upstream	156	50	188	151	63	131	56	132	42	104
TATTTGCGTGTCGTTT	alt_3975_upstream	258	116	353	303	132	269	107	247	110	243
GAGACTCATGCGCCAA	alt_3975_upstream	272	91	330	326	109	272	97	268	129	239
CCGCAGGTCTAGAACA	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
TGCATCCGCAAATCGT	alt_3975_upstream	19	6	15	14	9	7	6	13	4	10
CAACTAGAATTTCGCG	alt_3975_upstream	27	13	34	28	16	36	14	35	5	30
TTTCTGGGAATACAAG	alt_3975_upstream	55	21	63	77	24	39	22	59	24	43
CAGATTAGGCTTGCGT	alt_3975_upstream	251	80	292	277	102	265	93	255	119	211
GTCGCGCTGCGTTGAG	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTATTTCCCGCCT	alt_3975_upstream	87	28	82	69	23	78	32	65	29	70
GGCCGCGGCCATTTTA	alt_3975_upstream	409	76	442	387	85	359	81	324	101	337
GCTAGATTCGTAGCAG	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CTAGAAGGATGAAAGT	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
GCCTAGATACCAGTAG	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CACCCAATTAAGAATC	alt_3975_upstream	77	37	130	116	37	100	33	107	41	84
GTGCAGGGCTGCATCC	alt_3975_upstream	81	34	93	88	28	70	39	76	47	66
TCTACATTGTGCCAGT	alt_3975_upstream	88	43	195	132	46	84	49	109	50	96
AGGAGTGTTGCTTTAT	alt_3975_upstream	55	16	87	68	29	59	19	68	21	47
CATATACGAGTATGCC	alt_3975_upstream	77	19	100	79	26	72	18	64	35	71
ACGTAGGTGTGCATAG	alt_3975_upstream	55	26	66	46	25	42	28	43	29	49
CTAATTCCTCACATTG	alt_3975_upstream	14	11	25	6	4	19	8	12	7	9
GCTCTAGCAGATTTGT	alt_3975_upstream	101	51	125	111	44	86	42	94	55	85
ACAACTCAAAATCTCC	alt_3975_upstream	250	117	343	298	143	247	142	316	130	228
TGCTTGCGCAAATTCT	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CACTCCATTACTCGTA	alt_3975_upstream	1	5	1	5	3	2	5	3	4	1
CTAACGAGCGCAATGG	alt_3975_upstream	59	32	98	70	27	64	34	69	16	44
GCTATGGGCCTACGTA	alt_3975_upstream	261	86	362	335	98	274	89	291	112	227
GTTAATCGTTTCTACG	alt_3975_upstream	232	74	296	263	72	188	106	199	103	211
ATCCCCATGTATAACT	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACCCGTTTCATC	alt_3975_upstream	27	8	20	30	10	26	7	23	13	10
CCCATTGGCCGGATTG	alt_3975_upstream	2	0	1	0	1	0	0	0	0	0
GCTCAACTCGTAAGGT	alt_3975_upstream	60	20	63	59	32	44	27	52	20	37
ACCGACATAGGGTCGA	alt_3975_upstream	263	80	356	309	105	242	96	274	117	254
GATTGTTCTTTACTCT	alt_3975_upstream	45	29	58	46	18	44	15	41	18	27
GGCTGATGAAATACCG	alt_3975_upstream	216	35	240	191	39	174	39	178	35	165
CTTAGTCCATCCCATT	alt_3975_upstream	6	5	9	11	3	6	5	11	2	9
CAGAGCGCTGGCCTAT	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
TCCATCCTAAGTTATT	alt_3975_upstream	103	36	140	81	39	97	40	87	44	79
CTAAAATTGACCACCT	alt_3975_upstream	14	5	12	15	6	13	6	10	1	11
ATATTCTAGGTTGACT	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCCAGAGATTCCA	alt_3975_upstream	72	22	105	77	19	65	26	66	34	62
TAGGGGCCATATTAGG	alt_3975_upstream	173	62	243	250	67	191	63	182	66	204
TGTGCACGACGAGTCC	alt_3975_upstream	15	3	17	22	4	17	5	15	5	13
AGGCATACTTGATGCC	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
TGTAACTCGGAACGAC	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
CACGGCGGGAGACCCG	alt_3975_upstream	152	65	199	192	66	154	66	185	71	137
TATCGATCCAGGTCAA	alt_3975_upstream	138	62	161	136	65	137	59	108	74	122
AGGCTTATTCGATTAC	alt_3975_upstream	182	66	234	212	65	195	71	128	68	163
ATAAAACACCCTTAGA	alt_3975_upstream	16	4	21	22	6	18	4	19	5	12
TCACTTAATGCACTAA	alt_3975_upstream	179	90	220	212	60	175	63	137	75	158
CCAAGGTCACCTCCCC	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTACGTTCCTGT	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
GCAATCCGCATTGGCC	alt_3975_upstream	3	12	12	7	23	10	14	6	14	8
TTTTCGTTCGACGGGG	alt_3975_upstream	129	45	149	142	45	111	54	145	58	97
CGATTAGGGAGTCCAC	alt_3975_upstream	98	38	133	65	42	107	38	111	44	64
CGACCCATGCCCCTGC	alt_3975_upstream	65	26	63	50	27	39	18	43	26	57
TTTGTTTTCTACCGTG	alt_3975_upstream	450	193	544	486	171	418	175	488	183	356
AGTAGCCCGTTTCTGT	alt_3975_upstream	156	56	178	192	64	138	57	157	55	104
TAGCCACGTCACGTAA	alt_3975_upstream	75	32	93	105	39	77	41	80	37	52
CATATTCATGTCAGTT	alt_3975_upstream	38	23	53	46	7	36	20	47	20	25
GCGACCTGGAGCAACA	alt_3975_upstream	227	75	292	267	80	231	74	193	77	193
GAATCTCTACGCATAA	alt_3975_upstream	68	34	90	67	21	59	28	67	26	59
ATTGGTGCGTGGGTCC	alt_3975_upstream	232	84	300	285	70	245	88	238	94	233
TATCATGGCCCTCGGG	alt_3975_upstream	278	76	344	298	96	254	93	270	94	261
TTTCTTAAAAGGATTT	alt_3975_upstream	68	24	78	82	17	72	18	85	26	75
GGCCTTCCTTTCTCAA	alt_3975_upstream	0	0	0	0	0	0	0	0	0	0
TTACGCTAAAGGTCGG	alt_3975_upstream	44	11	53	53	17	37	11	52	17	42
ACTGTGCAGTCCAGCG	alt_3975_upstream	110	60	160	155	69	113	85	159	70	127
CTCCCCTTCAGTGAAC	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
TCTCTGTGTAGTTAGG	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
TACTGCAGGCGCTTTT	alt_3513_missing	26	27	16	32	21	22	23	26	27	17
TCTTCTACATGAGCAC	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
GGATCTAGCCCCATAT	alt_3513_missing	11	15	25	19	18	15	18	13	31	16
TACAACTATTTAATAG	alt_3513_missing	90	103	93	75	93	69	117	71	75	67
TTATAGCGAATATGCG	alt_3513_missing	37	47	58	47	41	42	54	18	61	35
AGCATCTCAAAGCTCT	alt_3513_missing	17	12	17	22	16	20	21	8	18	19
CAGAGATGGTCGCGTG	alt_3513_missing	87	102	93	98	94	90	99	84	120	96
ATCCGAAATTCAATCC	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
CTGGCCTCAACCCCTA	alt_3513_missing	12	16	15	16	19	11	26	14	25	8
AAGCGCTGAAAGTATG	alt_3513_missing	26	35	25	25	28	23	41	21	37	28
TTATTTTGTCCGCATC	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
TGGCCCTTCCACCGGG	alt_3513_missing	14	13	20	11	4	11	13	11	9	6
GAATATGTCGGTTGGC	alt_3513_missing	228	256	294	238	242	237	284	230	261	201
CTGTATCCGGGGTGCG	alt_3513_missing	13	17	22	15	26	10	20	22	19	11
GTTTTGCCTATTGCAG	alt_3513_missing	6	8	19	12	8	4	11	9	11	2
CACATGACGTCAAGCC	alt_3513_missing	9	12	16	17	16	18	20	16	11	14
GCATCGTACACGTCTT	alt_3513_missing	11	20	16	13	20	14	19	8	8	20
CTTATACTCGGAGTCA	alt_3513_missing	40	38	40	55	42	50	41	36	40	37
CATCACTGTCTGTTAT	alt_3513_missing	101	125	92	86	151	100	143	95	114	96
ATTTGATAGTTAGATG	alt_3513_missing	53	64	76	54	89	63	91	59	78	47
GTTCTGTCTACTAGCA	alt_3513_missing	8	16	9	11	10	6	20	11	18	9
TCCGGTTTCGGCTGGT	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
TAGTTAAATCTTGAAC	alt_3513_missing	68	71	70	59	57	78	71	57	74	56
TAACTCGACGTGGGGT	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
CTGGTTGGGGTTCTAG	alt_3513_missing	13	13	10	11	12	5	7	4	15	12
GGTTATAACTTCGGAG	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
CGTATATCTTTTAGTT	alt_3513_missing	6	3	2	1	4	2	5	8	2	6
TCGCGATCACGTGTCG	alt_3513_missing	50	29	67	44	40	40	49	33	54	36
TCTTCACGCCAGGCAC	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
CAGCATTGACGCACGC	alt_3513_missing	28	29	33	44	40	26	32	25	41	27
AGACCGAGTTCGCCAT	alt_3513_missing	0	0	0	0	0	0	0	0	0	0
CGCCGTCCTGTGACAC	alt_3513_missing	28	55	20	17	49	26	73	24	88	21
ATATCCGAATCCGTGT	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
CTCCCAGGCGACCCTG	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
TAAACTCTAACAAAGA	ref_4396_missing	10	17	24	19	21	25	10	11	29	20
ACGTCAAACTTGCAGA	ref_4396_missing	51	58	51	30	59	40	66	43	90	48
GTCGCCCTTAGCGCCC	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
ACAACCTCTTATGTGG	ref_4396_missing	6	11	5	4	9	6	17	1	20	1
GCTTACTAAATCGTTC	ref_4396_missing	14	19	18	15	13	5	8	17	24	8
TTTCCGTGGAAAGTTC	ref_4396_missing	12	14	13	12	11	10	22	13	14	16
GACGCTTGTGTGTGCC	ref_4396_missing	24	29	26	20	29	13	41	19	26	15
ATCGGAAGCATCGACC	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
CATTTAGATGTCACCT	ref_4396_missing	31	50	43	28	57	27	48	37	56	34
GCCAACCTACGGGCGT	ref_4396_missing	21	42	28	33	26	25	41	22	32	24
ATTTGCCTAAACCGAT	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
AAAAAATTGTATCTGT	ref_4396_missing	11	11	16	12	14	17	20	19	27	11
TAATAACGTGGCACAG	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
TTCGAATTTTATGCTG	ref_4396_missing	5	7	5	6	8	6	12	12	13	5
CTTCCGGTCGGGTTGT	ref_4396_missing	43	64	46	31	65	38	49	38	55	34
TGGCGTCTCTGCTTCA	ref_4396_missing	48	40	48	38	55	46	38	38	34	38
TCCGGAGGGCTCAAGC	ref_4396_missing	42	66	48	52	88	27	63	34	80	29
GGAACTCTTAACAGGT	ref_4396_missing	23	23	27	23	30	21	43	21	42	21
GCTTAATTTACGAAAA	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCGGGCAGATTC	ref_4396_missing	24	29	21	21	16	23	30	20	26	10
CAGTATAAGAACCCTC	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
GTTTGTTAGGTACGCC	ref_4396_missing	8	4	4	6	4	4	4	0	3	2
CTGACTTGCGAAACCA	ref_4396_missing	2	12	4	12	6	5	17	7	11	9
GTTGTGGTATATCATT	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
TACCTATCGTTTCATC	alt_4396_missing	35	70	38	33	63	22	77	19	81	36
GTCATCGTATTTGTAT	ref_4396_missing	50	41	73	47	62	66	72	46	73	61
GTTAGAATTTGGCCTT	ref_4396_missing	33	54	47	48	49	43	53	22	51	32
TGACCCTAGTGAAAAG	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
AGTTTGATAACACCCG	ref_4396_missing	9	8	9	13	11	6	8	11	13	7
TGCACAGTTCGGGATG	ref_4396_missing	51	73	94	60	64	48	91	43	99	57
GATAGGGTTTCCTGCA	ref_4396_missing	49	60	64	34	66	36	71	42	73	44
AGGTAGCTGGTATTTA	ref_4396_missing	33	38	43	42	47	32	49	37	63	29
CATTTGTGATGGGTGA	ref_4396_missing	11	13	7	7	15	7	14	8	5	6
CATTACGATGCTGGGG	ref_4396_missing	17	39	14	18	24	14	40	26	33	18
GTGGCCTAGACCATGA	ref_4396_missing	212	301	198	197	333	157	310	157	336	183
AACCCCTGATCGGCTA	ref_4396_missing	14	37	22	19	62	27	43	35	48	17
GTGGTATCTATTTAAC	ref_4396_missing	0	0	0	0	0	0	0	0	0	0
CGTGCCGCGTGAGTCC	alt_3763_missing	2	12	3	10	14	3	9	1	7	1
ACCGGATTGAGTAGGG	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
CTTTCGCCATTCAGGA	alt_3763_missing	11	26	8	12	22	6	13	4	21	4
CTGGTTTACTAAACCT	alt_3763_missing	4	15	3	11	10	3	15	1	15	4
GAATCTACATGGACCC	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
AAGAGGTATAATTGAC	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
TGTCTGTCCGGTTAAT	alt_3763_missing	11	31	18	17	31	12	26	17	42	19
CTTCATTTTGGTATGT	alt_3763_missing	17	38	19	14	26	14	29	6	29	4
ATATGCGCAGTTTTCG	alt_3763_missing	6	31	9	7	28	8	25	9	29	15
TCCTAGTTCAGAGAGT	alt_3763_missing	15	39	27	7	42	16	52	19	46	10
AATGGAGAACGTTCGA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
GGGAGCTCTTCTATCC	alt_3763_missing	33	64	37	41	73	23	79	20	78	23
ACGCCTGTGCCTCCTA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
TACTGTGTTTTTGTTA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
TCGTCGCGTAGCACCA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
TCGTTTCATTCTCCAG	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
GCGATAGCTAGGTAGG	alt_3763_missing	27	101	29	18	106	27	96	17	104	20
AGAAGAGTCGTCCGTT	alt_3763_missing	4	9	14	7	15	8	9	3	6	4
GGAGGATTCAACGCAG	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
TTATCGGTGACGCGAG	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
CCAACCCAGAGGGCCA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
AAGCTAGTTCCGCTCA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
AAACGCAGACAACCTC	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
GTGGCAGACACAACGG	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
GTGTGTGAGCTTCACG	alt_3763_missing	2	18	2	3	12	0	24	1	19	3
CTGTCTTGGTCCTACT	alt_3763_missing	18	32	15	12	37	14	47	5	27	17
TAGGTTCACTCTTCCT	alt_3763_missing	29	76	22	31	69	18	57	22	68	18
CATAGTCCGGCTGCCT	alt_3763_missing	5	11	3	7	21	7	12	2	10	6
AGATGTCGTAGAACTC	alt_3763_missing	4	7	4	6	5	0	11	4	8	3
TGCGTGAGTTTCTTTT	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
CCTCCGAGCCTATTAG	alt_3763_missing	28	120	57	56	132	46	133	33	149	34
CACAGGTGCGGGTTTA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
CCCTCATCGTATTAGA	alt_3763_missing	7	38	11	2	26	9	22	4	32	2
CGGCTAGAAGGTGTGT	alt_3763_missing	4	6	2	3	8	1	13	7	8	3
AACAGGTGTACCATGA	alt_3763_missing	14	20	7	10	32	7	30	10	35	16
ACCCGAACTCGCTGGA	alt_3763_missing	4	24	18	5	28	9	26	2	19	5
GAGCGTGTGGTTTGTG	alt_3763_missing	1	8	2	0	6	1	11	3	7	8
GTCTCAGCAAGAAATA	alt_3763_missing	0	3	2	2	8	1	9	4	8	2
GTGCTTCGATTGATTT	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
ACCAATTCGCGTTGCC	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
CACAGTCGGCATCATC	alt_3763_missing	1	1	0	0	0	0	1	0	2	0
GCGAGGGCGCTCGAGG	alt_3763_missing	1	2	0	1	6	1	3	0	4	0
TCAGTTTCTACGAGAT	alt_3763_missing	5	13	2	3	5	1	12	4	13	3
TTTGCGAGTTTTTGCA	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
AATAATGCCATCCGTG	alt_3763_missing	14	46	22	12	44	15	52	18	54	6
TGAACAGATGTTCTCC	alt_3763_missing	5	13	4	3	14	9	19	2	21	5
TCTGTGGTGTCTAGGA	alt_3763_missing	4	2	1	0	2	3	1	3	9	0
CTTCGTTATAGCCAAT	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
GGTCAACTGAGGTCTT	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
CTCCCACCATCCCGTG	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
TGCGAAACGACAGTGG	alt_3763_missing	0	0	0	0	0	0	0	0	0	0
GGTCTATTGCCTAATG	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
GGCTCATATCACCGTT	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
AAGAGTTGTGGTGGAT	alt_1616_RC	31	65	59	39	54	38	57	35	65	42
TTGGTCCTGCATGTTT	alt_1616_RC	20	24	13	19	21	21	12	8	18	16
AGATTTTCAAGCACCC	alt_1616_RC	57	47	53	54	50	50	61	37	65	44
CATGGCCCTTCTCTAG	alt_1616_RC	49	88	98	99	106	77	69	68	92	85
AGGGGCGATGGAACTG	alt_1616_RC	16	15	7	17	20	13	17	8	19	14
GCTGCGTCAGCTTACA	alt_1616_RC	29	46	35	30	38	38	38	37	36	38
CAAATTTTCCGCTTGT	alt_1616_RC	1	6	3	2	4	4	1	8	6	5
TCCTTACTCCCTCCGT	alt_1616_RC	43	135	89	60	141	57	112	57	118	55
CGTTACCCCTTATATA	alt_1616_RC	41	87	40	36	61	32	61	36	66	37
TTCTCGTTGGACATGC	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCTTCCAACGCA	alt_1616_RC	84	140	144	121	139	106	118	112	139	123
TTTTTAGATCATGTGC	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
CTAATTGATTAACCTT	alt_1616_RC	13	8	5	5	6	9	10	2	5	3
TATGCCTGACTTCGCA	alt_1616_RC	36	36	42	34	58	41	35	31	53	38
GTCATTTACTTACCCC	alt_1616_RC	0	10	3	3	16	0	12	1	8	1
ATTCCTCCAAACCCGC	alt_1616_RC	8	5	6	4	6	6	5	8	3	3
TTGTATCGCCTTCTTA	alt_1616_RC	11	12	18	10	19	18	11	15	18	20
CGCGGTCTTCGCCGCT	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
TGAGTGGAAGCGGTCG	alt_1616_RC	86	95	118	96	101	86	142	80	113	81
TACATGGACCTAATGA	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
TAGTATGGTAGTAGAC	alt_1616_RC	6	6	12	10	10	7	8	12	1	7
TGGAAACGAATTTTAC	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
TTAGTTTATTTCTAGT	alt_1616_RC	20	61	25	21	32	28	36	18	43	16
TCTGCGCGTGAATCCT	alt_1616_RC	5	9	8	7	8	2	4	3	9	7
AGCGTTCAGAGGCCTT	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
CGTCTATTAGGACTGA	alt_1616_RC	101	140	145	99	169	112	182	112	188	109
GCTGCTGAACGGGAGT	alt_1616_RC	31	38	44	34	34	34	47	43	45	38
AGTGTCCTCGGACAAC	alt_1616_RC	87	92	100	116	101	94	100	83	117	91
TCGAGAGCGCCTGAAT	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
TTACCCCCCGATATTT	alt_1616_RC	13	39	19	11	27	11	43	10	35	11
TAGTGTCTCTTCACCC	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
ATCAAGAGCGACCAAG	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
GAAGGACCTCACGCAT	alt_1616_RC	22	15	21	13	18	13	13	14	15	6
GCGCTTGTTAATGCGT	alt_1616_RC	8	4	5	6	10	6	9	6	6	3
TGCTTGACCTTGTCGG	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
TTAGGAACGCGCAAAT	alt_1616_RC	87	123	121	95	134	89	144	71	162	84
ACATGATTGAGTAAGC	alt_1616_RC	19	29	16	26	22	24	25	16	31	25
ACTGGATTTTCCTTAG	alt_1616_RC	123	156	169	138	165	178	143	123	179	137
GCTCCTCGCTACATCA	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
CTAACAACTGGCCTCT	alt_1616_RC	22	29	38	35	33	23	22	20	41	21
CTCCGTTCGTGCGTGT	alt_1616_RC	3	19	2	6	14	2	24	6	24	1
GAGCCACACTTTATTA	alt_1616_RC	18	30	23	29	33	29	54	19	61	30
TAGTCATCTGACTATT	alt_1616_RC	30	32	37	30	37	32	44	30	39	34
GTTAGCATTCTGACCC	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
TCGCGCTGATGGTGGC	alt_1616_RC	50	54	55	53	41	45	51	38	59	45
GGCAGCACCAGAGTTG	alt_1616_RC	95	87	91	91	86	80	81	72	94	71
TACCCTTTTATAGACA	alt_1616_RC	55	77	97	84	70	58	77	74	82	49
GAGTGTGAGTCGTCGA	alt_1616_RC	44	43	48	43	45	45	40	36	63	31
CGCTCTCTGCACGATC	alt_1616_RC	63	80	94	86	77	69	88	74	76	56
TCGATCGTGCTTTTCC	alt_1616_RC	21	21	16	27	23	15	28	19	34	12
ATCATCTGGACGCAAA	alt_1616_RC	0	0	0	0	0	0	0	0	0	0
ACTTCAGGTGCCCGGT	alt_1616_RC	19	32	46	26	40	20	36	24	39	22
ATCCCTGTGTGATGCG	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
ATATTGTGATTTACTA	alt_4994_RC	19	20	18	8	12	14	18	14	26	7
TCGACATTATAATCGT	ref_4994_RC	38	46	41	41	29	28	34	21	24	26
ATACTGCGCTATGATG	alt_4994_RC	41	42	29	30	33	22	37	32	35	37
AACGTCTACTCGGGAA	alt_4994_RC	6	7	5	9	4	4	7	7	6	2
AGCGGACTACTATCTG	alt_4994_RC	0	3	0	0	1	8	1	2	6	1
ACTTTCGTTTATGCGC	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
TACGATGCGGGTGCGT	alt_4994_RC	3	1	4	1	3	2	5	6	6	1
AGTGGTACAGTTTCGG	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
GGTTAGGCTGAATTAG	alt_4994_RC	32	45	37	33	40	45	43	34	43	35
TCGTTGGAGCGCGAAT	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
TGACGAAGCCCACGAC	alt_4994_RC	1	0	1	1	2	0	0	0	3	1
AGTCTTCCATAGGGGC	alt_4994_RC	50	62	80	73	51	42	68	44	61	36
CTAATTATATGTATTT	alt_4994_RC	13	11	15	22	20	4	26	8	15	7
GTCAATATTTTTGGAG	alt_4994_RC	9	3	2	4	11	6	3	3	2	2
TGGTCATTCCATGCAT	alt_4994_RC	9	5	3	2	7	3	3	6	11	4
GGCCTCTACCGATCTC	alt_4994_RC	28	47	46	25	59	33	47	36	40	27
CCTAAATTATGTTCAA	alt_4994_RC	20	28	25	21	21	13	31	17	34	23
GCAGCGTCCGTGCTCA	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
GGAGATCATGTCAAGG	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
TTTCCTTTTCCCCCGA	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
TAGATGAACTTGACGA	alt_4994_RC	53	41	44	58	60	67	40	64	58	37
GTTTCTGCTTCTCAGA	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
GGAATTGGGTTACTAC	alt_4994_RC	7	7	17	14	15	7	18	8	19	15
ACGGCTCACAAACATG	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
TGACGGGCGCTTAGTT	alt_4994_RC	18	18	34	19	26	22	30	21	21	25
CTTGTTTAACGATCTT	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
CGCAATTCCATGACCG	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
TTACACCGAGATCGTG	ref_4994_RC	139	149	151	165	141	143	134	139	148	150
CCCACACGGATGAAGT	alt_4994_RC	24	28	39	28	33	29	38	29	48	24
TGTCTGTGACACTGCT	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
CAGGTCTATCATCACC	alt_4994_RC	7	14	11	3	18	7	17	11	19	10
TCTCAATAGCACATCG	alt_4994_RC	33	58	54	39	60	34	61	47	67	31
TGATCACTGCGAGTTA	alt_4994_RC	20	25	25	17	24	27	23	21	29	15
GGTTCATGGTATTGAC	alt_4994_RC	5	2	7	1	4	12	2	8	4	4
GACTAGGTTCTCTCTT	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
TTACGCCGTAGAGATT	alt_4994_RC	22	34	29	26	35	35	29	34	53	21
TCTATATGAGGTCGGT	alt_4994_RC	32	42	53	41	57	39	31	39	49	31
GACAGACGCGCTTTTC	alt_4994_RC	33	24	29	19	21	16	25	22	26	25
TCTTGCTCTAGTGCGG	alt_4994_RC	7	11	3	11	12	5	7	7	5	5
AGGGCCTATTGACAGC	alt_4994_RC	40	51	45	35	45	39	66	32	69	32
CCATGACACATCAGCC	alt_4994_RC	3	13	6	2	13	3	19	1	18	1
ACAGTCACTCCGGGCT	alt_4994_RC	8	33	16	11	18	11	36	12	29	15
GGGCAAAGCATTATAT	alt_4994_RC	27	22	20	15	24	28	26	22	23	27
GCCCTATATGGTCGCA	alt_4994_RC	15	12	26	15	15	17	10	18	12	13
ACGGTATCGATCCGAG	alt_4994_RC	39	50	52	38	52	33	52	35	48	38
AAGAGCACATGGTCTT	ref_4994_RC	3	6	12	11	4	10	8	5	6	5
CGTTCTCTCAACCATC	alt_4994_RC	76	100	105	124	90	93	83	74	87	75
ATAGAGTTTAAAGCAC	alt_4994_RC	43	38	37	35	38	36	50	27	40	29
CTCTTACCAAATGTAG	alt_4994_RC	15	24	21	12	16	20	18	11	23	10
TGTCAACGCTCTAATT	alt_4994_RC	0	0	0	0	0	0	0	0	0	0
GGCGTGAAGTTTAGCA	alt_4994_RC	10	10	8	10	10	10	9	2	10	7
GGCTGCGTAGGCGAGC	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
ACCCTGTTTTGTTGGT	ref_5055_upstream	78	79	83	79	70	76	64	70	57	78
CTGGAGTTGTGGTGAT	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
CTCACTACTGACCTTC	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
CATAGAGCGGGTTCGT	ref_5055_upstream	42	43	45	38	18	40	31	41	45	53
GTACATTCCCAGCGCT	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
CGGGCAATATTTTTGT	ref_5055_upstream	100	53	88	80	72	84	65	71	84	65
TCATTGAGTTGCAAAA	ref_5055_upstream	151	127	159	168	115	142	124	136	131	133
GGAAATTCGAGTGCAT	ref_5055_upstream	17	14	20	20	10	24	13	10	18	15
CAAGACTCTGAGGCGC	ref_5055_upstream	89	59	102	100	51	75	59	94	75	85
CTGCGTGGTTCCCTTA	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGACTCTCGGGGA	ref_5055_upstream	79	53	77	68	36	73	56	70	56	66
ACTCGGGGGGGGTGTG	ref_5055_upstream	119	91	103	105	73	118	84	90	102	93
TCCCCCGTAATGCATG	ref_5055_upstream	4	8	11	15	6	6	5	10	7	9
ATTTTCCCGTGCACAA	ref_5055_upstream	33	24	54	42	16	38	30	27	24	35
TATGAAACTTCCTCGG	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAGGAACACACCT	ref_5055_upstream	18	19	31	23	19	25	26	12	20	15
AATGGGGCAGGTCGTC	ref_5055_upstream	40	23	57	35	27	32	25	26	29	31
TGCCGTTCGTATACCA	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGACGCCCCACAC	ref_5055_upstream	74	42	77	73	56	76	50	64	52	69
AAGTCCGTTGTGTTAT	ref_5055_upstream	40	26	50	36	19	33	46	37	33	29
TCGTAGGGTCAGAATT	ref_5055_upstream	53	50	107	62	51	78	64	63	57	70
AGGCATGTTGCCACTT	ref_5055_upstream	75	58	79	72	59	62	61	55	48	57
GATCAACGTGGTTCAG	ref_5055_upstream	111	115	143	118	93	118	97	88	104	81
GCGGCTCCCACTACGT	ref_5055_upstream	115	63	126	103	82	80	67	94	57	102
TCCTACCGCTCCAGGT	ref_5055_upstream	31	17	25	24	23	19	34	29	25	15
AGTCCTTCTTGCGGTC	ref_5055_upstream	69	44	63	59	55	66	63	54	47	54
CCTTTAATTCGAGTGC	ref_5055_upstream	14	15	9	13	12	9	11	13	7	9
TATTCCAAACTTTTAT	ref_5055_upstream	27	20	45	25	13	26	17	26	14	30
TTGCACAACACTGCTG	ref_5055_upstream	42	59	78	56	62	75	58	62	64	59
GAATCATCTAATGAAT	ref_5055_upstream	139	91	170	129	82	114	97	132	85	117
AGATTAGATTCCCGTA	ref_5055_upstream	63	54	88	62	48	69	54	72	55	69
AAAGATAATCTCGATT	ref_5055_upstream	10	3	14	13	7	12	4	14	8	12
GTCAGAATTCTGACTT	ref_5055_upstream	234	151	328	268	180	256	182	263	189	215
TTCCGCGCTTTCGCCA	ref_5055_upstream	205	130	218	181	125	184	131	165	139	172
TCGACACGTTGGACAC	ref_5055_upstream	21	8	19	15	14	14	9	19	10	12
CACAGAGCATTTATAT	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAGGCAGGAGTAT	ref_5055_upstream	55	35	73	47	41	64	54	39	45	67
GCCACCAGCCTATCAA	ref_5055_upstream	6	1	6	4	4	4	4	4	4	1
ACAATTGCGTGGGATG	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTTAAATCCTCC	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
CATTATCATTGTTCAT	ref_5055_upstream	8	12	17	14	12	9	9	4	8	11
CAACTCTTGGGTTCCA	ref_5055_upstream	13	9	8	11	5	7	11	7	8	6
GGGTCTGGAGGCCCTG	ref_5055_upstream	89	59	134	97	54	97	73	75	83	72
GCTCATGCTGCCCCAA	ref_5055_upstream	0	1	1	0	0	0	0	0	0	0
CCACCACCATTTTGTT	ref_5055_upstream	23	127	20	24	104	24	125	26	130	22
TCCATTTTACACCGTA	ref_5055_upstream	50	59	57	59	58	41	75	47	67	31
GCCGTCTTGTACCCAC	ref_5055_upstream	35	39	49	42	32	27	40	37	32	29
TATTAGCCCCGAAGAC	ref_5055_upstream	44	28	52	40	30	50	42	40	46	40
GCCATAGTTCGTAGTA	ref_5055_upstream	35	39	41	29	32	35	34	34	35	22
TTATAATTCTTTTGTA	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAGGTCTTTTTTT	ref_5055_upstream	46	37	47	49	37	53	32	29	33	43
GTGAGTCAACCGAGGT	ref_5055_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCAAGGACATTGA	ref_4925_reverse	8	7	7	13	10	11	10	3	9	6
TGTCATTGAGTCTGGC	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
AAATACGCTTTTTATT	ref_4925_reverse	11	24	28	22	18	16	29	21	25	25
CTAGCTGAGCTGCTTA	ref_4925_reverse	62	81	66	60	87	67	85	51	83	48
GGTCTTTCTCACATTA	ref_4925_reverse	24	31	16	22	26	17	32	16	26	11
TGACTGGAGTATTTTG	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
ATAATTGACTATGCCC	ref_4925_reverse	9	14	8	5	10	3	9	5	16	9
CCACAGCCTTTCGATT	ref_4925_reverse	1	14	11	9	28	12	17	6	29	1
CCTATCACATCTCGTG	ref_4925_reverse	75	89	83	77	110	55	98	59	119	54
TTCATGATTAGAGTGA	ref_4925_reverse	22	30	14	12	22	10	44	9	29	14
GGTACTAGATTCCGCT	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TACGGGGATACTGGAA	ref_4925_reverse	4	4	3	2	10	2	8	3	14	5
TTCTATTTCATAGTGG	ref_4925_reverse	27	31	27	24	29	12	30	8	39	25
TCCCTGGGCAAAACTT	ref_4925_reverse	69	105	72	54	105	49	95	53	105	62
ATGTGTAGATGCTCCT	ref_4925_reverse	0	0	1	0	0	0	0	0	0	0
AACATTAGATTTTGTT	ref_4925_reverse	27	20	28	22	18	27	24	13	22	12
AGCATTCTGCATATGC	ref_4925_reverse	11	20	19	7	21	17	15	7	12	9
CTCCTGGTAGTCTTGA	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGTGCGCGCACTA	ref_4925_reverse	1	2	0	2	2	0	1	0	0	1
GCTTTCCATCCCCACG	ref_4925_reverse	16	26	19	19	36	21	42	22	31	14
TGTCATCAGGCATTTA	ref_4925_reverse	35	28	22	17	35	37	45	22	35	11
CGGCAAATGACGAGCC	ref_4925_reverse	25	32	31	16	39	29	27	26	43	30
GCCTTCCGGGTTTGAT	ref_4925_reverse	15	19	38	13	39	21	32	20	30	20
ACAGCCTTCGACCTCT	ref_4925_reverse	26	89	42	41	60	19	78	34	81	33
ACTAGGTTCCATTATC	ref_4925_reverse	1	21	9	2	14	4	12	4	13	6
GTTGAAGTACTCATTG	ref_4925_reverse	107	138	101	81	156	82	151	88	175	74
TACGGCATGCGTCAAC	ref_4925_reverse	26	40	31	16	38	26	27	16	39	27
CGATGCTCTACACTCG	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TGGGAGGGAGTACACA	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCTGGCTTGGTGT	ref_4925_reverse	6	7	6	4	6	0	8	2	5	5
TCTACGCTGTGTCCCA	ref_4925_reverse	3	16	13	11	9	4	12	4	20	13
TACGCACACAGGTGAA	ref_4925_reverse	22	35	31	16	35	12	33	13	34	18
GATGAAGCACGCATTG	ref_4925_reverse	27	34	25	31	34	19	35	26	35	23
AGGCAAAGCTGGCTTG	ref_4925_reverse	22	31	33	30	41	24	38	22	33	27
TACATCGAAGAGCCAT	ref_4925_reverse	9	8	14	6	8	8	8	11	12	3
ATTAGCGTTAATTAAA	ref_4925_reverse	29	28	34	32	46	33	50	25	31	31
CACTACGCCTCATGCT	ref_4925_reverse	67	96	51	47	102	45	102	46	129	70
GGTCCTTGTGATTACA	ref_4925_reverse	6	6	9	8	13	5	10	10	5	6
CTGTACTTGCTTGGGT	ref_4925_reverse	64	116	80	44	121	50	107	64	135	55
TCTTGCCGCAGTACGG	ref_4925_reverse	14	15	11	10	13	8	12	8	15	4
TAGGAACTCGAGATAG	ref_4925_reverse	0	2	3	5	6	0	3	1	6	4
TACCTCGTTCCCCTTC	ref_4925_reverse	2	3	0	4	11	0	7	3	7	1
TTGACTGTTTCACAGC	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCATTGGTAGATG	ref_4925_reverse	4	4	2	3	4	3	6	1	7	4
GCGCAATTCACCGTAC	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCTCTACCCGATT	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
CAGACCCCACCCTCGT	ref_4925_reverse	1	4	1	2	2	2	4	3	5	0
GCTCTGATTTGCGGGG	ref_4925_reverse	23	24	25	16	33	21	28	17	36	21
TGACATTTTACTCATA	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TAAATTTAACTCGAAG	ref_4925_reverse	18	22	27	20	22	15	32	15	24	21
TTTTATAGTAGGTCTT	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCGGGAACTTCCA	ref_4925_reverse	66	64	86	63	99	69	96	66	84	55
TGGGATAAGCATTGTG	ref_4925_reverse	19	20	17	19	19	20	27	15	33	10
CTCGAGCTCCGAGCCG	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
AAATCTTACTAATCTT	ref_4925_reverse	20	25	29	14	22	17	18	22	36	24
AGCTGAGAGATTGTGT	ref_4925_reverse	22	24	19	11	33	18	50	9	40	17
TCGGTAGTCGCAGTAT	ref_4925_reverse	22	43	27	38	29	29	49	15	36	31
CTTCTCTTTTGGCTCG	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
ACGCGAGCCGGGACAT	ref_4925_reverse	79	153	91	66	147	88	150	83	162	67
GGTCGTGCGCCAGTCG	ref_4925_reverse	33	104	28	28	82	36	86	26	86	25
TTTGACCCTCGTCACA	ref_4925_reverse	14	32	19	15	30	15	13	27	26	13
ACTAACCTTTGGGAAG	ref_4925_reverse	38	56	30	29	74	33	70	25	74	25
AAGACTTTTCGGTATG	ref_4925_reverse	14	11	11	7	20	5	15	10	10	4
TCATTGCAGGCCATGT	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TCTACGAATTTGTCTT	ref_4925_reverse	8	16	13	20	24	2	17	15	17	10
GGTATTTATACCGCGC	ref_4925_reverse	7	27	19	8	25	13	26	18	20	16
TAGGACGTTATGTTAG	ref_4925_reverse	29	51	33	35	63	26	65	21	62	34
CTTATTATCCTCCCAT	ref_4925_reverse	1	3	2	4	4	2	3	5	12	3
TACCGAACTTTGTCGC	ref_4925_reverse	13	14	17	18	34	19	16	17	19	18
GGTTTAGGGCAGAGCT	ref_4925_reverse	35	56	44	39	59	38	65	37	53	35
ATTTAAACTTACAGGC	ref_4925_reverse	30	45	30	31	61	21	49	41	42	31
TCTTCACAGTGTTACG	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCGCATTAAACGC	ref_4925_reverse	1	4	1	3	4	0	2	2	0	5
TTCCGAACGGCAATTC	ref_4925_reverse	11	22	17	11	21	13	15	14	33	11
TCAGCAACGGTAAACG	ref_4925_reverse	0	0	0	0	1	0	0	0	0	0
TGGAGAAATTCGTGGT	ref_4925_reverse	34	38	42	23	50	20	40	18	50	22
CCGAAGTTGAGCGATT	ref_4925_reverse	0	0	0	0	0	0	0	0	0	0
TATTTGTCCGATGTCC	ref_4925_reverse	46	75	59	44	70	48	76	58	77	51
AATATACGCCGGTCAA	ref_4925_reverse	6	12	7	4	10	7	9	7	7	3
ACCTGTAATTCTTTAC	ref_4925_reverse	26	48	33	19	50	33	40	36	39	29
ACCAGTTATAAACTTA	ref_4925_reverse	19	56	50	38	34	27	50	29	58	24
CGCAACGCTCCGCTTC	ref_4925_reverse	1	7	5	5	15	4	6	4	8	4
AACAGGGTTATGTGGT	alt_5055_fdr	0	7	3	1	9	7	14	4	11	4
TATTAGTTTTTGGGTC	alt_5055_fdr	8	9	9	6	12	10	8	6	11	12
TTGTCAGTCTTTATCC	alt_5055_fdr	92	88	138	106	102	122	108	97	137	90
CAGTCTCCCTTGCCAG	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCTTAACGAGGG	alt_5055_fdr	196	170	206	165	168	195	172	190	204	161
GTGGTACCTTTTCCGG	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
CTAAGGGCGTCGCTGT	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
TGGGAATAGCTCTTCG	alt_5055_fdr	20	19	20	13	13	12	21	13	23	24
ATCGCGCCATCCTTCG	alt_5055_fdr	3	6	4	8	6	6	7	3	13	6
CAGGGGAATGTCTTCA	alt_5055_fdr	52	43	44	50	44	35	30	44	48	46
GACCTCTAACCCTGGC	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGTAGCTGCCGGG	alt_5055_fdr	27	14	25	24	19	22	13	12	15	10
ACACCCATCGAGATGC	alt_5055_fdr	58	53	44	38	42	54	46	45	72	42
CAAGTTCGATTCGCGG	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTATGCGCGTCAT	alt_5055_fdr	3	7	6	3	10	13	4	12	8	2
CAAGCGAAGATTAAGT	alt_5055_fdr	106	108	136	113	109	93	123	107	82	104
GCTGCAAATACCATCG	alt_5055_fdr	6	3	4	7	13	4	6	1	11	5
TTAAGTCTATATCCTG	alt_5055_fdr	64	67	67	47	66	66	67	49	76	52
GTACCTCGGACTAAGA	alt_5055_fdr	16	9	15	7	12	9	5	6	7	11
CCAGGTAGTGAACCGG	alt_5055_fdr	6	27	5	10	38	10	36	8	34	14
TTATAGTCGTCCACAT	alt_5055_fdr	70	45	69	35	45	49	48	38	53	39
CACAACAGTTCTCAGC	alt_5055_fdr	5	7	13	11	13	6	15	5	11	11
GTTTATACACCAAACT	alt_5055_fdr	3	9	4	4	3	3	6	3	8	6
ACACGGGCCCTGTACG	alt_5055_fdr	23	19	22	20	25	14	8	13	18	18
TATCGTGTCGAAACCA	alt_5055_fdr	4	2	2	3	0	6	1	1	1	0
ATGCGCGTAGAGGGAT	alt_5055_fdr	54	57	68	48	63	53	70	50	59	47
ATTTTTCGGGAGACGG	alt_5055_fdr	37	32	29	31	26	30	27	30	43	26
CAACTAATACTTAAGC	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
TGCATTGCAGGGATTT	alt_5055_fdr	163	159	177	128	165	149	173	161	201	167
TAGACTCATTAGGTCT	alt_5055_fdr	15	20	18	17	18	23	19	27	25	16
CGCTGTCTTCTCTTTT	alt_5055_fdr	41	39	54	36	49	32	39	42	32	42
AGAACTCGCCACGTTT	alt_5055_fdr	173	156	192	159	198	180	151	173	167	182
GGGCCTTATCTGTTTT	alt_5055_fdr	119	108	149	141	127	131	98	141	162	122
TAGACCACTTATTCAA	alt_5055_fdr	24	17	17	23	22	19	22	29	24	12
GTCAGCTCACTCACAG	alt_5055_fdr	14	10	15	15	17	9	16	12	9	25
GATCGCTGTAAGAAGG	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGTTTGCTGTCCT	alt_5055_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGTCAGTGAGTCT	alt_5055_fdr	12	21	18	15	9	12	15	9	15	10
TGTCCTTATGCCGTAC	alt_5804_new	0	1	0	1	1	0	1	0	1	2
CCTAGCACCGGTCGGC	alt_5804_new	15	33	24	20	34	25	28	18	34	15
AGTCCCTCTATAATAA	alt_5804_new	42	36	27	23	40	38	50	26	53	18
TCTGCTGATATTTGAG	alt_5804_new	15	25	11	16	15	19	16	15	26	12
AGTTGTCCGTTACTTA	alt_5804_new	0	0	0	0	0	0	0	0	0	0
ATCTTTTCGCTGACGT	alt_5804_new	11	4	13	7	9	13	4	10	7	6
CGTCCGTAGCCCGTCA	alt_5804_new	0	0	0	0	0	0	0	0	0	0
TGTTTCTTCACCTCCC	alt_5804_new	0	0	0	0	0	0	0	0	0	0
TAAACTTGATTTTTCG	alt_5804_new	12	11	15	9	21	7	16	9	16	5
GACATGGTATCGAATT	alt_5804_new	31	45	50	37	36	29	50	21	43	26
GGGTCAGCTTAGTGAT	alt_5804_new	0	0	0	0	0	0	0	0	0	0
ACTTTCGTCCCGCCTC	alt_5804_new	34	40	49	43	47	32	38	43	36	22
AGTATGTTCCTTGCTT	alt_5804_new	13	12	11	12	16	12	11	12	25	8
TGCCCCTTTCTTCCTA	alt_5804_new	2	3	5	2	2	0	3	0	2	4
ACAACCGGGGTCCCCG	alt_5804_new	0	0	0	0	0	0	0	0	0	0
TAGGACTAGCTTATCC	alt_5804_new	6	19	9	18	11	18	22	12	11	10
ACGTGTCTTTACCGCT	alt_5804_new	18	22	19	13	30	24	32	5	21	17
CATTAAGCCATCCTTG	alt_5804_new	0	0	0	0	0	0	0	0	0	0
CGATGGAAATAACGAT	alt_5804_new	17	17	24	19	15	8	22	15	17	16
GTCATGCTCTTGTTTT	alt_5804_new	11	13	14	13	8	14	13	19	10	16
GGTTTTAGAGGTCGAA	alt_5804_new	11	26	16	8	17	12	19	11	20	9
GGTTCTCCTGAGCTAT	alt_5804_new	0	0	0	0	0	0	0	0	0	0
CATTCCGTCAATATCC	alt_5804_new	6	10	14	9	10	7	16	4	14	13
CTATCCTTTTTGCCCA	alt_5804_new	0	0	0	0	1	0	0	0	0	0
ATATTCCGCTCCCAAA	alt_5804_new	31	69	55	30	84	33	86	48	81	29
CTTCGCTGATTTTCCT	alt_5804_new	0	0	0	0	0	0	0	0	0	0
TTTGTCATCCCATAGA	alt_5804_new	2	11	10	7	7	7	12	4	11	8
TGTATAAGGCACGTTC	alt_5804_new	0	0	0	0	0	0	0	0	0	0
CAAATAGTCTTACTAG	alt_5804_new	12	11	9	4	14	6	10	10	8	4
TTTGGGGTGTGCTCAG	alt_5804_new	32	83	41	44	77	32	82	27	85	49
TTATCGTGCAAGCTGG	alt_5804_new	12	20	10	18	12	17	43	11	30	10
TCCCTCACACATTGAC	alt_5804_new	0	0	0	0	0	0	0	0	0	0
TTCTCGCCTTCTGGCG	alt_5804_new	22	21	20	12	36	11	22	15	32	10
AGAGTCAATGCTGCGG	alt_5804_new	0	0	0	0	0	0	0	0	0	0
GGCCTACCAATTTGCG	alt_5804_new	8	8	4	4	6	7	3	3	11	5
GCGTGCGTTCGAATTT	alt_5804_new	18	27	31	21	36	15	49	22	42	24
ATCGCGTTATGGGTAA	alt_5804_new	17	26	25	20	27	21	23	13	16	13
TCGCGAACTCGCCTGC	alt_5804_new	4	15	7	12	5	8	8	7	8	12
GGGTCAGATATTTGTT	alt_5804_new	10	17	17	11	19	16	36	19	28	16
AACTCCCACTCAGGCG	alt_5804_new	6	47	6	4	35	6	37	3	49	5
TTTCACGCTAATGGTA	alt_5804_new	99	94	70	65	110	69	115	62	116	60
CCTCCGTTCTGCCGGC	alt_5804_new	0	0	0	0	0	0	0	0	0	0
AATTACGAGGTTTCTG	alt_5804_new	9	5	10	11	12	6	15	7	14	13
TGCGCAGGTACCTATT	alt_5804_new	0	0	0	0	0	0	0	0	0	0
TGGCACATCAGAGCAT	alt_5804_new	19	38	39	27	33	29	36	24	45	12
TGCCTGTCATTCGCTG	ref_5664_new	0	0	0	0	0	0	0	0	0	0
CTGTAAGCTCGAGTTT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
ACCCCTGCAATTTCCC	ref_5664_new	0	0	0	0	0	0	0	0	0	0
CTACTTCTCTACGTGC	ref_5664_new	0	0	0	0	0	0	0	0	0	0
CCGCGCCCACATTTTG	ref_5664_new	0	0	0	0	0	0	0	0	0	0
GCTTGTAGGCTGCTGC	ref_5664_new	0	0	0	0	0	0	0	0	0	0
GGTAATTAATGACGAA	ref_5664_new	6	23	13	8	15	5	15	11	32	8
AGCTGTGTATTATGGC	ref_5664_new	6	10	5	5	13	8	7	1	13	2
CCCTACTCTTGTGTAG	ref_5664_new	26	50	21	19	26	27	40	14	50	16
TTTCCAGACCTCTACG	ref_5664_new	0	0	0	0	0	0	0	0	0	0
GCGGCCGACCGAAGTG	ref_5664_new	0	8	2	0	19	3	22	0	20	1
AGGTCGAATGATTGGC	ref_5664_new	0	19	1	1	12	5	16	3	19	3
TAGGCTAAACATGTGT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
TGCCCGCGTCTATGTT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GACGTGTTTGGTCGCT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
GATCAAGCGTCATCTG	ref_5664_new	0	0	0	0	0	0	0	0	0	0
TAAGAATTCCGTCAGA	ref_5664_new	20	21	13	8	20	7	17	3	14	6
ATATGTTTGGTCAGCA	ref_5664_new	0	0	0	0	0	0	0	0	0	0
CTGGTAGACTAGGCTA	ref_5664_new	24	50	26	23	40	17	47	13	62	18
CGTCTACAGATTGGTT	ref_5664_new	3	11	5	2	6	3	5	6	3	2
ATGTCATACGCAGCCT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
GGGTATGCCCGTGTAC	ref_5664_new	0	0	0	0	0	0	0	0	0	0
AGTTTAACGAGTGCTT	ref_5664_new	2	13	10	14	19	6	22	5	12	1
ACAGGCACTTGAGGGC	ref_5664_new	0	0	0	0	0	0	0	0	0	0
CCGCGAACATACTGTT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
TGGCCTGTCATCGCGT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
CGCCCAAATCTCATAA	ref_5664_new	7	19	5	7	17	2	13	8	18	4
AAGTATCTTGAGAATT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
TCTATTGCGTCTCTTA	ref_5664_new	3	7	2	0	10	1	7	1	9	3
TCCGCCGTAATCATTG	alt_5664_new	0	0	0	0	0	0	0	0	0	0
ATAGTCACGATAACTG	ref_5664_new	2	3	3	2	2	2	3	0	4	0
CCATAGACTGCTACTC	ref_5664_new	2	17	1	3	9	2	19	2	14	1
TCGGCGACTTAGCGTA	ref_5664_new	10	26	11	18	24	11	27	6	30	4
ATGTTCGGATAACAAT	ref_5664_new	4	10	4	0	6	5	3	2	7	3
TGTTGTTGTTCTCGGT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
AAAGTGTGGTTTATTC	ref_5664_new	0	0	0	0	0	0	0	0	0	0
CTCGATAGTGGTTAAG	ref_5664_new	2	22	9	13	23	7	20	10	13	1
GCTGTGGCCAGTCGGT	ref_5664_new	0	0	0	0	0	0	0	0	0	0
TGTAGGCTATACATTC	ref_5664_new	3	9	6	2	9	7	6	2	9	2
GTCGAATAACATATAC	ref_5664_new	22	55	33	25	43	18	55	14	52	22
TTCTAGGGATCTCTAC	ref_5664_new	10	20	15	8	17	10	19	11	23	15
ATTAGCGGGCGATCCA	ref_4684_upstream	23	13	37	39	9	26	9	22	13	25
TGGCTTAAAGGGGAAT	ref_4684_upstream	53	14	57	52	21	46	10	51	25	45
CGGGCACATGGTAGCT	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
TTCACTGTTCGCTAAT	ref_4684_upstream	34	21	40	35	22	22	34	20	34	37
ATTATAACAATGCCAG	ref_4684_upstream	78	52	114	92	40	81	48	92	51	86
TAAGATAACCAGATTC	ref_4684_upstream	451	197	510	464	192	417	202	396	202	367
GATTTCAGTCCTAAAT	ref_4684_upstream	73	42	83	64	39	73	50	79	48	47
ACTTGAATCTCGCTCT	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTCGTGCGCTTCA	ref_4684_upstream	32	12	33	35	9	26	17	30	7	24
CGCTATGGGGTAGGCG	ref_4684_upstream	94	31	96	93	40	78	31	62	51	98
ATACAATGATATATTG	ref_4684_upstream	388	136	425	368	154	309	164	344	159	258
CCGATGGATAGCGTGA	ref_4684_upstream	43	16	51	43	26	41	22	50	24	36
GAGGTTTGAATTATCC	ref_4684_upstream	78	46	95	105	39	81	34	78	30	73
TTAATAAAGTCGGGGT	ref_4684_upstream	108	57	138	116	71	113	43	117	55	113
CGCGTCCCATGTTTTC	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
AACTCATGGGGGCTCA	ref_4684_upstream	1	0	0	1	0	0	0	0	0	0
ACGTCTTTTAGTGCCT	ref_4684_upstream	15	7	16	8	10	12	2	11	2	12
AATGTCGTGGGTTGAT	ref_4684_upstream	86	51	121	115	42	104	59	97	49	102
ATGCACTCCGGGCACC	ref_4684_upstream	89	34	92	81	28	83	46	89	37	70
CGCAGCAAGCCAGGCA	ref_4684_upstream	132	70	140	124	51	128	74	97	70	109
GCTGGCGCTGTCCCTA	ref_4684_upstream	166	54	163	172	73	172	66	143	94	152
TCCATCACGCTTCGGC	ref_4684_upstream	76	53	108	102	57	58	55	98	58	78
GAGATCGCACAGTGTT	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
TCTAATGCGTTCTGCC	ref_4684_upstream	39	20	52	55	21	31	29	23	13	27
AGTTAATTTTAGGCAA	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGGCGAGGGGATA	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCCACGACTGGCT	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGAATGACACTTA	ref_4684_upstream	29	23	40	33	13	53	14	38	20	32
TTTGAATAAAAAGATC	ref_4684_upstream	38	19	65	45	16	46	26	31	18	41
CGAACAGTCTTGCTAT	ref_4684_upstream	72	38	74	70	31	56	37	57	32	52
CCTCAAGAGTGGTTCC	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
CGACGTTGATCAGGTA	ref_4684_upstream	36	13	39	27	19	36	21	20	12	26
GCTACGATTGTACCTC	ref_4684_upstream	64	89	93	90	130	71	109	79	119	61
TTGGGTTCGTCCTTGC	ref_4684_upstream	109	59	151	153	65	119	60	106	62	109
CCATGTATGCGCCAAT	ref_4684_upstream	45	14	78	38	37	59	23	36	34	49
TCCATTGTATGTTGAT	ref_4684_upstream	42	10	39	21	14	22	12	22	17	16
ATACGAACATATATCA	ref_4684_upstream	30	12	55	31	11	31	17	32	21	36
TACGTCCCCTCATGTC	ref_4684_upstream	0	1	4	5	5	2	3	1	2	4
TTGCCTATTTTTAAAC	ref_4684_upstream	149	76	163	144	78	131	82	117	86	87
TGGTCGGAGGCACGTG	ref_4684_upstream	33	18	47	33	20	29	17	38	17	30
GGCGGGTACCAAGCCG	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTGGACTTTTGTG	ref_4684_upstream	258	137	290	305	138	273	144	282	132	242
CCGTGGGCCTAAAGGT	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
CCGTGCAATTTAGTAG	ref_4684_upstream	71	59	74	63	53	61	54	70	40	60
ACTATTGAGGGAATGA	ref_4684_upstream	66	24	91	86	40	87	40	69	37	71
CCGGGTAATAAAAATT	ref_4684_upstream	1	1	2	1	1	2	0	0	0	0
GGTATTCAATAACGTA	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
CATTGGACCAGATGGC	ref_4684_upstream	177	73	197	188	61	153	72	155	70	128
GAGGTAGTGGGGCACG	ref_4684_upstream	109	59	143	115	52	115	56	87	62	111
CGCCAACACGGGGCTA	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
CATTTGAGTGCATTCT	ref_4684_upstream	48	19	65	77	20	48	31	69	34	48
CCTGGACTTAAAGGCG	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
AGACTTGCGCGCCGGG	ref_4684_upstream	78	33	86	89	40	59	35	56	41	81
GTGGACGTTTCCTGCA	ref_4684_upstream	207	92	247	195	78	191	98	196	102	182
ATCTTCGGTTGCTTCT	ref_4684_upstream	103	32	119	114	52	86	44	84	54	87
CACTCACTCTGCCGGG	ref_4684_upstream	5	3	1	1	8	4	4	1	7	3
CTTATTCCGCTAAGTA	ref_4684_upstream	486	228	588	465	207	412	200	410	223	360
CGGCTCTAGCTTTCTC	ref_4684_upstream	15	7	27	23	8	24	12	30	8	17
TTTGTATGAGGCTTTA	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
GAGGTCGCTCAGTGAT	ref_4684_upstream	10	9	24	27	8	26	11	27	10	29
GGTTCCACTATAAGGT	ref_4684_upstream	1	1	5	9	1	5	0	1	4	3
CAGGTCAACTGAAACA	ref_4684_upstream	37	32	41	51	35	31	21	43	38	35
GAAGATTGCTATATGG	ref_4684_upstream	10	3	14	11	5	6	5	11	7	7
GTTTGGCTTGTTCCGG	ref_4684_upstream	38	17	48	37	15	33	21	46	20	28
AAGTCACGTTCACCGT	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
TTAGGTGTGAGACTTA	ref_4684_upstream	191	61	190	202	71	163	84	168	78	154
CACTCGAGTAACCAAA	ref_4684_upstream	85	42	113	127	54	67	50	81	44	90
AAACCTCGGCACCCGT	ref_4684_upstream	70	25	54	55	30	51	36	56	25	47
CTATAGAGGGTATGTG	ref_4684_upstream	159	83	187	176	67	133	90	156	71	132
TTTTGCTCGGCTTACA	ref_4684_upstream	31	21	37	45	18	29	9	34	28	30
CTTATGAGTAAATCGG	ref_4684_upstream	21	11	14	20	10	8	13	28	23	10
ATCCGTTTTATTCGAA	ref_4684_upstream	32	11	33	41	23	34	17	24	22	33
ACGACACTGTCTCTCG	ref_4684_upstream	28	24	41	37	24	45	16	27	23	38
TGTGAGCCAGATCACC	ref_4684_upstream	2	2	0	1	1	1	1	2	0	0
ATCGCGCCCAATTTGG	ref_4684_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTGCTATCGTGAT	ref_4684_upstream	76	26	107	61	27	84	25	71	45	58
CCTGGACGATTTAAAC	ref_4684_upstream	332	154	345	335	126	308	140	269	148	302
AATACGCGTCCTTATG	ref_4684_upstream	64	29	81	79	33	74	22	58	26	52
ATTTTTGATTCCTTAC	ref_4684_upstream	39	16	39	29	13	35	19	31	13	24
GGTGCGAGCCCGCTCA	ref_4684_upstream	6	8	8	8	3	13	5	10	2	7
TTACAGGAAAGATGCT	ref_4684_upstream	180	81	212	173	78	215	87	135	83	142
CTCGGCAAAAGGTACA	alt_3187_reverse	0	0	0	1	0	1	0	0	2	0
CTCACTGTCAGCTCCA	alt_3187_reverse	421	659	489	425	644	408	685	374	742	400
ATGGTTTTATCTCATC	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCTTGGGCACACC	alt_3187_reverse	26	36	21	21	45	10	38	17	58	12
CTCTATTAGGGTACGT	alt_3187_reverse	83	182	113	95	181	71	177	73	187	72
CGGGAGAGACCTAGCC	alt_3187_reverse	27	84	18	27	73	35	90	22	94	19
AATTTCTAAGCTAGCT	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GGCACAGGATGCATAC	alt_3187_reverse	49	55	77	56	74	51	88	36	77	44
GATCATTTCGTTAGGA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
TGGTAAGGCTACGCCA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
TACTCTCTTTTATCTA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
AAATGTGCTATGTGAT	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGCACTTTTGCCC	alt_3187_reverse	62	101	69	49	67	55	78	52	84	54
CTGTAAGACTGGAGGA	alt_3187_reverse	63	103	74	84	105	57	124	62	105	50
GATCTGCGGCTTACGG	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
CACCGCTTCAGCTCGA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GGGGTTACTATGATGT	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
TCTCACAGTGCTTGAA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
TTCTAGTGTCTGCGCT	alt_3187_reverse	13	24	10	9	18	7	10	11	15	10
CTACTTTGATGGGGAA	alt_3187_reverse	1	2	0	2	1	0	1	4	3	0
ACCTGCATAATACTCC	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
CCTCCAGTCCATCTGA	alt_3187_reverse	7	43	8	5	32	10	54	0	42	10
TTTTATTATTATCCTG	alt_3187_reverse	92	127	110	94	118	92	126	74	161	64
GTTACAACAGTATATG	ref_3187_reverse	3	7	2	4	7	3	7	0	8	1
GCTGGGTTAGCTTAAT	alt_3187_reverse	0	8	2	3	0	1	1	1	3	3
GTAAGATCTTCAAATG	alt_3187_reverse	10	32	20	15	17	12	23	11	26	10
AAGGGAGCGATTACCC	alt_3187_reverse	75	76	75	66	87	51	88	64	92	56
GTTCTATAACTCGTAC	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCCGATATTGAGC	alt_3187_reverse	33	35	34	32	43	23	25	34	35	23
CATTTGGGCAGTAGAT	alt_3187_reverse	115	135	126	107	180	110	174	120	174	115
GTTTGTGTAGGACCCT	alt_3187_reverse	26	46	26	22	61	28	37	30	50	26
TTGATGGGCCTTATCC	alt_3187_reverse	194	258	235	206	292	181	303	186	321	159
GTTAAAGTCGTGGGAC	alt_3187_reverse	84	93	102	71	107	63	101	56	128	58
CCATATTATTTCTACA	alt_3187_reverse	36	69	54	46	73	43	76	42	66	34
ACGGTTCTCTTAACCA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCATGCGTCTGCT	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCCCGGTTTATCG	alt_3187_reverse	7	26	21	9	25	7	22	12	20	11
GGCGAGAAGAGATGCT	alt_3187_reverse	5	6	8	4	11	5	8	3	7	2
CTAAGTCGTTGTTGTG	alt_3187_reverse	21	28	30	17	24	19	28	13	25	11
AAAAGTCTGCGATCTC	alt_3187_reverse	14	12	12	10	21	18	9	6	18	11
CAAAACCACTCGGTCT	alt_3187_reverse	20	48	35	35	68	25	46	45	53	32
ATATCCCCTCATTCTT	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGCCGGGATACTT	alt_3187_reverse	36	54	49	39	65	37	67	28	49	41
TTTCGATTACGAGCCA	alt_3187_reverse	59	62	48	55	76	53	72	42	74	44
TAAGGGGGGATCCAGT	alt_3187_reverse	19	27	35	26	31	21	35	23	34	15
GCGTGGTTTGTTTTCG	alt_3187_reverse	9	4	6	2	8	4	4	3	7	3
CCTTAGTTCACATGTT	alt_3187_reverse	13	50	9	15	58	18	46	13	63	12
TTTATTTAGTCTCGTA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGCTTGCTTGGTT	alt_3187_reverse	26	28	30	22	47	18	36	20	44	22
TTATCTAAGTATCCGC	alt_3187_reverse	1	0	0	1	0	0	0	1	1	6
TTTCAGATGCGCGGTG	alt_3187_reverse	13	29	17	19	24	10	30	16	15	11
AGTACGATCTGTAGCT	alt_3187_reverse	68	85	65	82	109	67	88	76	65	51
ACCCTAGTATTGTTAA	alt_3187_reverse	98	129	112	89	155	94	136	85	145	79
AAGGACCTCGCGAGTT	ref_3187_reverse	41	42	53	36	63	37	43	34	56	34
GCGAAATTTGGATAGT	alt_3187_reverse	23	43	20	21	43	30	31	32	53	22
GGCTATGAATTGTGGG	alt_3187_reverse	42	47	37	33	49	28	48	20	47	33
CATCTCCTGTAGTTCG	alt_3187_reverse	4	11	8	4	22	13	10	8	17	3
CGGTTATGCCTGTACC	alt_3187_reverse	9	41	17	8	38	13	51	13	32	4
CATGTTGCGTATGAGC	alt_3187_reverse	18	21	25	25	16	18	17	17	23	16
CATGGGCGTTTTCCGC	alt_3187_reverse	0	3	8	2	9	9	8	6	2	1
ATTCACTTATTTTACG	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTTTAACATGTAC	alt_3187_reverse	39	41	36	23	34	30	53	21	54	26
GATCCGGATACATTGC	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCCATGGTGCTG	alt_3187_reverse	18	34	44	25	52	31	38	23	39	21
GCTTGGCACTACGGAA	alt_3187_reverse	22	57	44	34	63	28	58	35	57	28
GGCCATCGTGATGGTA	alt_3187_reverse	85	107	85	75	137	66	135	78	123	95
CTAGACATTTGACATA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
CCTAGTATAGGGGGGC	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GATTGTTGAAAGAGTC	alt_3187_reverse	9	6	11	4	9	4	11	7	8	8
GAAACTTGCATTCATT	alt_3187_reverse	63	76	75	66	72	55	85	49	75	49
TACCAGTCGACTCTCT	alt_3187_reverse	5	54	7	10	36	13	49	13	53	7
ACGCTTCGAAGAGAGT	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
AAGCGTTATCAAATTA	alt_3187_reverse	50	75	74	55	82	62	90	49	82	55
TGTTGTCCTATCCAAT	alt_3187_reverse	27	26	31	18	37	29	32	26	40	25
TTTGCCTATTTTTGGG	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCGTTTACGCACC	alt_3187_reverse	69	97	90	73	106	39	117	66	118	54
TCAGAGATTGTCAATC	alt_3187_reverse	41	58	21	39	64	37	81	37	49	33
AACAGGTGATTTTGTT	ref_3187_reverse	32	62	32	34	62	28	67	45	75	44
CGGGGTTCCGCCTATG	alt_3187_reverse	46	48	47	31	63	39	55	43	60	35
AGACTTTGTCGAGGTT	alt_3187_reverse	197	286	228	190	264	196	315	200	323	197
CTTTCCTCAGTCTTAT	alt_3187_reverse	0	9	7	5	11	5	11	4	5	7
AACGTGTAGTGTGTGT	alt_3187_reverse	6	13	14	6	16	8	14	8	21	4
GATTCTATGTCAGCGC	alt_3187_reverse	64	86	87	60	66	53	80	59	83	56
TACCGCCAGGGGGCTA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GGGCACGAAGCGCAAT	alt_3187_reverse	23	18	17	14	18	17	17	13	18	9
GTGGGCTATCCAAGAA	alt_3187_reverse	35	38	28	36	52	32	31	21	28	30
CTTCCATTCGGTCCAC	alt_3187_reverse	7	10	4	2	6	2	5	6	7	1
TAAGCTTTTTGATTAT	alt_3187_reverse	5	10	4	4	4	4	15	6	4	5
CTTCCTCGAGGAACTG	alt_3187_reverse	81	75	61	61	79	55	73	58	81	45
TGGAACTTGTGTTCTA	alt_3187_reverse	54	100	51	42	78	49	72	48	78	37
TCATTCGTTTAATGGC	alt_3187_reverse	38	59	50	38	57	39	57	34	58	37
TCCATAATCGAATGCA	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
GACTGACCTATGTTAG	ref_3187_reverse	55	73	61	40	71	47	80	33	89	34
ATGTGCCGCTTATACT	alt_3187_reverse	14	23	17	16	36	12	18	13	20	10
GAAGAGTGGGTTCCCT	alt_3187_reverse	49	76	66	62	58	46	85	53	78	53
TATCGTTCAGAAGACC	alt_3187_reverse	0	0	0	0	0	0	0	0	0	0
CACCTAGTTGTTCGAT	ref_5705_new	16	38	36	36	43	15	42	29	35	32
TAGTATGAGGTTTACA	ref_5705_new	52	64	88	54	46	58	52	48	85	48
CGTAAGGTAATTGACA	ref_5705_new	0	0	0	0	0	0	0	0	0	0
TGATGGCCACTGTTGC	ref_5705_new	12	15	11	14	10	10	10	9	20	7
ATTATGGTAGCAGTAG	ref_5705_new	7	5	8	7	5	3	12	6	10	4
GTCTGGCCCTCTGTCA	ref_5705_new	77	61	80	81	95	66	83	55	82	65
TAGTAATTACCGCGTT	ref_5705_new	0	0	0	0	0	0	0	0	0	0
GGTCTTTTTGCGTTTC	ref_5705_new	97	96	116	102	74	79	73	87	92	91
TCAACCCCCGCGCGAG	ref_5705_new	2	4	0	2	0	1	2	0	3	1
GCGTCATGGATGTTTA	ref_5705_new	77	89	111	74	56	66	84	51	81	58
TGTCAGGGGCCTTCGC	ref_5705_new	27	25	21	17	14	29	37	14	21	17
TTGGTCACGGAATATA	ref_5705_new	4	5	7	4	2	2	1	5	3	2
TAGCCTTTACAACCGC	ref_5705_new	22	14	20	17	18	13	25	15	23	13
AGTTATAGTCAAGTCG	ref_5705_new	55	59	76	50	56	42	70	65	67	47
TGATGGTTTGCCCATT	ref_5705_new	2	1	1	0	5	1	1	0	1	1
AACGGATAGTAGCACA	ref_5705_new	27	31	38	28	43	23	29	18	40	5
ACGGTTTATGTTCAGG	ref_5705_new	0	0	0	0	0	0	0	0	0	0
ACTTTTTGCAGCACCT	ref_5705_new	51	64	108	66	71	61	67	56	87	60
TATACTATGAATATCC	ref_5705_new	16	27	30	11	16	21	13	17	22	15
CGTAAATTCCAGTAGG	ref_5705_new	44	37	42	54	43	31	34	46	46	51
TGGTGCTCTTCCGTCC	ref_5705_new	0	0	0	0	0	0	0	0	0	0
AGTCAGCTCACGTTAA	ref_5705_new	0	0	0	0	0	0	0	0	0	0
TTATTTGTTCCGGCCA	ref_5705_new	10	5	11	4	6	15	7	5	12	8
CCCGCATGACGCGGTT	ref_5705_new	22	17	20	15	29	18	18	16	24	15
ATCCTGTCGATAGCAA	ref_5705_new	40	56	62	65	67	50	66	58	48	49
ACCTTATTACCCAACG	ref_5705_new	118	146	149	145	144	121	158	144	146	116
CTACTGATGGAATACC	ref_5705_new	9	3	6	3	7	1	3	4	8	1
CCGCACATATTTTGCA	ref_5705_new	40	40	52	35	38	31	55	54	41	38
GGATTATTAGCTTACA	ref_5705_new	4	0	5	6	1	5	2	9	0	1
CGATATTGTGGCTTAT	ref_5705_new	22	23	27	33	13	19	30	19	24	25
GCGTTCTTTTACCTTG	ref_5705_new	56	79	58	48	60	64	77	48	71	48
ACTTGGTGTAACGGCA	ref_5705_new	0	0	0	0	0	0	0	0	0	0
ACCCTTGGTGCGGCAC	ref_5705_new	32	43	39	28	37	27	51	15	57	22
TTTAGGTATAGCTCAA	ref_5705_new	1	6	6	6	6	4	10	0	2	3
TATCAGGGGCCTTCGC	ref_5705_new	0	0	0	0	0	0	0	0	0	0
GCGAATTTCTTTGTTT	ref_5705_new	223	186	278	250	187	215	186	203	206	221
CGAACGACCTGTGTTG	ref_5705_new	22	30	23	15	41	26	37	16	38	19
CCGAACATGTACTATT	ref_5705_new	0	0	0	0	0	0	0	0	0	0
TCGTTTTTATTTTCAC	ref_5705_new	23	22	35	14	30	22	22	17	35	25
GCGAGGCTATGAATTA	ref_5705_new	52	65	69	50	73	66	73	39	81	52
TCAGCTTACCTTACTG	ref_5705_new	2	14	5	3	22	2	19	4	12	1
CGCATACTCGCTCTTA	ref_5705_new	3	7	2	3	7	5	7	5	5	1
CCGCAGTTCTTGGGCT	ref_5705_new	19	17	29	20	26	25	27	19	22	12
TAGACAAATATCCAGG	ref_5705_new	35	46	43	45	44	45	56	63	50	38
CGATAACTATCGATCA	ref_5705_new	30	35	49	54	39	22	42	46	46	29
CTATTTCCTCTGCTAA	ref_5705_new	56	67	59	64	56	53	71	45	67	54
GCCACCGCTCCTTTTC	ref_5705_new	60	74	93	84	87	85	65	65	78	64
ACACCCACCTGGATTC	ref_5705_new	8	51	17	10	40	11	29	12	42	14
CTGCATCTGGCTGTCA	ref_5705_new	7	7	4	8	4	8	11	12	12	9
ACCCGAGTATTCGGCT	ref_5705_new	39	40	46	38	49	40	55	36	42	43
TCCGTTTTTATACAAT	ref_5705_new	8	9	7	9	6	4	4	4	14	6
ACTCAGTCTTACTACT	ref_5705_new	9	11	5	10	10	5	14	8	6	11
CTCCGGAGATGCGACA	ref_5705_new	0	0	0	0	0	0	0	0	0	0
CTGTGTCTGTGCAAGT	ref_5705_new	19	31	32	20	40	27	31	19	34	24
AGGCGAACACTGAAGC	ref_5705_new	56	42	47	48	33	36	47	39	55	49
ATGCGGTCCATACCTC	ref_5705_new	0	0	0	0	0	0	0	0	0	0
TTCCACATATGCGCAT	ref_5705_new	48	50	65	43	38	45	48	45	44	26
TGTTACGATAATTAAA	ref_5705_new	50	53	56	42	56	66	74	57	83	54
TTTTACCCTTCCGTGA	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
ACTGACCCGGCCATCT	ref_1150_upstream	17	38	23	16	32	21	31	20	38	21
ATTGTTCTTCTGCTCA	ref_1150_upstream	6	12	10	6	12	17	18	11	19	4
ACTGTCGGATCATAGT	ref_1150_upstream	3	8	12	2	6	5	16	11	16	3
TCCGTAATTCACTGTA	ref_1150_upstream	20	39	28	29	47	22	58	18	47	23
GACCGGGTTCCTTTTC	ref_1150_upstream	23	31	19	16	27	20	32	9	24	11
ATTAACTTTGCGTAGT	ref_1150_upstream	3	3	10	6	14	8	12	5	8	4
GGATCCGTTTAAGGAA	ref_1150_upstream	1	13	14	6	5	8	12	10	11	8
CTGCTTCGGATCTGGC	ref_1150_upstream	2	5	1	5	7	1	7	3	7	1
TGTAGTCCTCTGCTTC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTATTTAATACAT	ref_1150_upstream	22	34	15	20	32	15	23	18	35	20
TGTCGTCGCCGTCCTG	ref_1150_upstream	23	19	21	15	36	18	30	17	34	15
TAAATATGATGTGTGC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTACTGCCTGGG	ref_1150_upstream	15	25	17	20	30	18	22	8	34	10
CCAAGGTAAACTGATA	ref_1150_upstream	63	98	59	55	101	62	94	65	102	52
GTAACGTGTAATGTCA	ref_1150_upstream	2	3	3	2	4	1	4	2	7	2
CGCTAAATTACCCATC	ref_1150_upstream	0	13	5	10	9	6	16	10	13	5
ACCGACCTAGAACTCA	ref_1150_upstream	26	56	24	20	52	20	55	17	67	16
CACGGTGCTCTTCCTA	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CTCATTACTATTGCTT	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCCGTCCACCCTG	ref_1150_upstream	7	6	7	5	9	5	3	4	4	4
GCTACTCTTGGTGCCT	ref_1150_upstream	15	40	21	15	30	21	33	15	44	15
GTCCCCATGTCCGTTC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TCCATCGCTATCATAC	ref_1150_upstream	3	17	3	3	3	8	3	5	9	3
AGGTGCGATCAACTAG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGTATAAAGCATG	ref_1150_upstream	3	5	6	3	8	4	4	2	13	4
TCAGTAATGAACGCGC	ref_1150_upstream	59	20	48	38	19	38	28	57	29	35
GAAGTCCTGCGCAGTC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
AATGGATGTTATTGAC	ref_1150_upstream	16	27	21	15	22	9	28	14	16	14
TTCTAATGGTAATTGA	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCTTGTCCGGGCC	ref_1150_upstream	11	24	21	9	26	8	20	12	19	10
ACTCTAAAGATAACAA	ref_1150_upstream	4	6	5	4	6	2	5	0	9	1
TAATTAGACCCACCTG	ref_1150_upstream	6	8	6	0	8	6	7	4	13	5
GTCTCCCAGTAGCCGT	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
GCTAGTTCGTGCCTAG	ref_1150_upstream	8	14	4	5	13	4	13	6	10	2
TTGCACATCCGAAACA	ref_1150_upstream	40	70	56	37	67	40	75	36	74	29
TGCTGTGGTTTCGCTG	ref_1150_upstream	19	18	23	13	29	18	33	12	34	17
TACTGGTTATTGTCTT	ref_1150_upstream	38	43	40	25	59	42	69	15	68	39
CTCTAGCAACCGGAAT	ref_1150_upstream	0	2	0	0	0	0	0	0	1	0
TGGGTATGCTCAAAGG	ref_1150_upstream	7	18	17	6	20	13	18	6	21	13
TACTGTGCCGTCTTTT	ref_1150_upstream	5	13	4	12	7	7	10	10	5	5
CGCATTTTGATAACAA	ref_1150_upstream	3	1	9	2	8	1	5	1	5	8
AAGGAGTTGTTGTGCT	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
AACTTTTAAAGCATCT	ref_1150_upstream	5	6	4	13	5	6	6	6	7	6
CTCATCGGCAGGGCTT	ref_1150_upstream	1	3	5	2	5	6	7	2	5	3
TTGGACAGCTAAATCA	ref_1150_upstream	40	65	45	44	66	38	68	40	74	39
CCGGTAACCATAGAGC	ref_1150_upstream	5	25	4	9	37	7	26	12	42	9
TTGAGGAATGTGGGAC	ref_1150_upstream	29	43	32	32	33	14	37	20	48	30
CCGAGTCAGTTTTTGT	ref_1150_upstream	22	65	24	33	64	19	70	18	55	16
CCGATGATTCTAGAAC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TTCCATTTGCGCCTGG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CTTTATCATAGGTGGA	ref_1150_upstream	2	8	7	1	5	3	11	2	7	4
TTTTACCGGTGGCCTT	ref_1150_upstream	14	25	21	15	24	10	29	12	26	13
CGGTATCTCTGTGGGG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
AATCCGCGCCGAGATT	ref_1150_upstream	27	48	50	26	59	33	61	26	54	26
GTCTATATTTACCGAT	ref_1150_upstream	22	26	15	11	28	26	25	13	30	12
TGATAGAGAAATGTAT	ref_1150_upstream	17	61	35	27	54	27	43	12	63	24
CCATTGTGTAAAAGGT	ref_1150_upstream	36	39	51	23	54	33	44	16	66	41
GCAGAAATCCGGAATG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGATTCATCGGTG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCCAATGTCTGTT	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
AGTAATTCTGGCAGAG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
GCTCCGGATTCGTGTA	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTACTCCCCTTTC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
CAATCTTACGGATGTC	ref_1150_upstream	23	27	30	26	27	12	21	13	33	21
CAGCGAAATCTGAACG	ref_1150_upstream	46	77	58	47	108	56	124	51	79	40
ACTGCCTAGTACTTGT	ref_1150_upstream	52	100	82	67	111	57	124	65	128	57
CCACTTCAAGGAGGTG	ref_1150_upstream	41	58	46	35	65	31	52	38	74	38
GCCGTCTACCTTAGCG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TGGAATACGAGAGTGA	ref_1150_upstream	0	1	2	4	11	1	4	2	2	4
CGGAACTTCTGACTCT	ref_1150_upstream	11	21	18	20	13	11	17	15	24	21
GTTTGCTAGCACTTTC	ref_1150_upstream	32	44	28	19	44	19	23	18	40	19
TGTGGGTATGTGGTAT	ref_1150_upstream	6	13	10	3	7	6	12	4	13	2
TTAAGGGTTCATGTAT	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
GGGCGTTCTTATTTCG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TTATTCATTGTATATT	ref_1150_upstream	7	8	9	7	10	10	13	7	13	7
TGAGGAGATTGTTTGG	ref_1150_upstream	18	21	15	23	26	15	17	17	29	10
CGTCATTAAGTTGTTT	ref_1150_upstream	1	3	1	3	3	0	1	2	6	1
TTGAATGGGTTCTTCG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TACCGTGGGCAATTTT	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCTCGCAATAATT	ref_1150_upstream	8	6	7	4	10	4	13	8	12	6
AACCCTTTGGCGCAAG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
AAAACTCTATCCAAAA	ref_1150_upstream	1	9	1	1	4	0	4	2	5	2
AAACGGCATTTCTTTA	ref_1150_upstream	7	25	6	14	11	13	29	9	19	7
CTCGTTATGAGTCCTT	ref_1150_upstream	19	43	28	17	40	20	48	16	34	24
TCACGACTCGCGTCCG	ref_1150_upstream	40	116	45	43	96	43	90	41	108	35
CGATGGGGCTGTAATG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTTTGTGAGCCAC	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TCGATAGACTGAGCCT	ref_1150_upstream	6	20	14	10	11	7	18	8	12	7
TCCGTACTTATGTTCT	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
ATTCAAGCACGCGACA	ref_1150_upstream	43	67	65	42	78	39	69	35	64	42
ATATCGGTCACGGTAG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGCATATCTGATC	ref_1150_upstream	84	130	90	83	136	74	161	85	131	76
ACCTCCGCCCGTAGAG	ref_1150_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTTGGTATTTGC	ref_1150_upstream	37	81	48	36	81	52	79	42	75	27
CCGCGGAGTTGTTCGA	ref_1150_upstream	21	118	26	27	119	17	159	22	159	18
CATCTCATTCGGCCCC	ref_1150_upstream	17	15	16	10	16	13	16	18	22	9
TCGACATTATTTTTTA	ref_1150_upstream	2	13	5	10	29	1	15	4	13	5
TTCAAGGGCTCTTACG	ref_1150_upstream	11	31	18	10	24	10	22	14	26	14
ACAACCTATTTTTGAT	ref_1150_upstream	4	3	3	1	5	1	6	6	6	1
ATAAGTACGGCGTAAC	ref_1150_upstream	20	34	23	15	39	19	41	16	29	21
TTTATCACCTTCGGCA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTCTGTTTGTTGGTGT	alt_2061_negative	7	6	7	1	4	4	9	3	3	7
TCCACGAATATGTACG	alt_2061_negative	30	42	39	38	44	33	50	30	38	30
TTTATAATTGCAATCC	alt_2061_negative	31	26	31	35	20	16	27	32	31	25
TTACACGAGATCGAAC	alt_2061_negative	4	11	3	4	6	2	8	9	12	6
CACTACGACCTCGCTT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GGACCGGACGTACAGA	alt_2061_negative	28	33	39	37	23	13	33	24	46	15
TGCTCAAGTTTAGATG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CCCAATTTGACGACCA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CCCACCATGAGTGTCT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TCGCTTCATGTATGGC	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CTTATCAGAATCTAGC	alt_2061_negative	133	135	155	151	163	122	143	108	184	119
CCTCGAATTACAGGGA	alt_2061_negative	7	13	6	17	25	18	25	22	25	8
GCTAAATGTCTCCCAT	alt_2061_negative	4	14	13	8	13	5	11	11	12	12
TGGAGGATCGCATTAT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
ACTGGCATCCAAGAAC	alt_2061_negative	25	21	23	27	25	16	24	13	41	20
ACGGCCGTCGAACAGC	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTAATGCCGCTGAGGC	alt_2061_negative	30	65	45	32	41	43	65	38	45	52
CCCATATCACAAATCA	alt_2061_negative	34	34	63	40	49	33	45	35	41	33
CTGCTAATTGCCGGTA	alt_2061_negative	9	4	12	12	6	8	14	7	12	10
GTCAGTGACATCGTGT	alt_2061_negative	23	25	36	31	43	31	46	25	47	20
ATTTTGATTCCCCCCA	alt_2061_negative	4	3	2	3	8	5	11	6	4	8
ATTAAACTTTCATTGG	alt_2061_negative	45	77	64	55	62	44	74	51	61	55
TGGTTGCGTATTTAGC	alt_2061_negative	10	10	25	26	18	17	18	15	24	17
GCTTCTTCCGCCGTCC	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
AATGCATTCCTATCTG	alt_2061_negative	17	21	23	19	22	16	17	22	27	16
TACTTTTGCCGTTTTG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CTCGCGACGTTTTTGT	alt_2061_negative	28	39	41	46	34	35	28	35	26	25
ACTTTTACACCATCAA	alt_2061_negative	18	14	19	12	12	14	18	14	28	14
TATGCGCAGTGCCTGC	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
AATGAGTCGAGGATAC	alt_2061_negative	37	50	55	41	54	48	54	37	43	39
TTGTACTTCTTAGTTG	alt_2061_negative	61	52	65	57	54	76	50	46	67	30
TGATCGCTCCGTGAGT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTCAAGACATGTCTTT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
AGTTGGGCAAAGTAAA	alt_2061_negative	10	6	11	12	22	11	16	8	8	5
TACCATAGGTTGGTAT	alt_2061_negative	73	90	86	69	111	70	98	77	92	67
ACCTATCGGGGTCGAA	alt_2061_negative	12	15	20	10	12	10	16	9	16	11
GGAAAGGTTCGGTTAG	alt_2061_negative	10	7	13	14	8	9	10	6	11	10
AAGTTATCCGCAGCAG	alt_2061_negative	54	54	54	46	60	54	64	37	62	41
TCTAATGAGCGACCGA	alt_2061_negative	89	93	93	70	62	70	70	65	79	52
ACTCAACGCCTATAAG	alt_2061_negative	22	33	25	30	40	25	35	22	28	26
TCCCTAGCCATAGAGC	alt_2061_negative	34	53	41	44	52	42	57	26	50	43
GGTGGCCATGCGGCGA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CTTTCAACCGTGACAG	alt_2061_negative	9	24	19	16	19	16	28	16	21	5
TTGAATGCTTGCATGT	alt_2061_negative	22	25	31	29	22	18	27	16	38	33
ATTGTTAACTCGTTTT	alt_2061_negative	3	6	4	4	1	2	2	2	2	2
TGTGTGATTGGGTTCA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTGGGTATCCCCTGGT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTCGGGCGCAATCAGG	alt_2061_negative	10	12	19	26	16	7	12	16	16	9
TCGAGTCTTCCCCCTT	alt_2061_negative	49	67	66	50	65	45	61	47	52	53
CTGAGGTTCGTTATGT	alt_2061_negative	9	19	16	18	5	25	15	12	13	9
CAAACCTTTTGCGCTT	alt_2061_negative	25	50	39	39	45	19	45	27	49	24
ATCCTGCCGATCTAAC	alt_2061_negative	1	4	1	1	0	2	7	0	0	1
TGCCCTTCAGTTACGG	alt_2061_negative	50	64	62	62	58	31	71	48	54	30
CCTGAAACAATTACTT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GTTCAGCGCGCGTACG	alt_2061_negative	0	4	1	1	1	0	0	2	0	0
GTTCACACCGTCGTGC	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTGGAGTAACCTGGTG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GCAGCTGGGTCAGGAA	alt_2061_negative	45	27	44	43	31	40	34	36	42	38
TTTGATGGATCATTCG	alt_2061_negative	51	44	52	55	52	37	44	43	58	40
CTGCCGCGTCATATGA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GGTTCCACATTCAAAA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTCGTCTTCCTCTTAA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GATGGCCTTCCCAATT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GGTGACGATAAAGGGC	alt_2061_negative	19	19	31	22	17	24	9	13	15	16
TGACATACAAATCAGG	alt_2061_negative	15	11	18	13	18	4	10	12	10	19
TCCGCGTCCTGTTTAG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CACCAATACCCAGGCA	alt_2061_negative	1	3	2	3	4	3	2	3	1	2
TGCGCTTAGATCGAAT	alt_2061_negative	46	81	60	49	60	50	62	72	59	55
GTTTTCGCCAGTAAAA	alt_2061_negative	14	23	19	12	28	25	15	29	16	14
GATCGATTTGGGAACT	alt_2061_negative	23	42	43	48	21	25	41	33	44	32
ATGAGTCTGCATGTTA	alt_2061_negative	72	81	57	69	82	66	66	55	75	55
ATCTCTCATGTCGGTG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
ACTTCGATTCTGTTCA	alt_2061_negative	2	3	5	6	4	1	5	3	6	5
TTGTAACAATTCGTTA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTTCAAGACCGCCCAC	alt_2061_negative	4	3	8	4	11	7	4	3	10	1
TGTTCCAGATCGTGGC	alt_2061_negative	65	76	68	68	74	49	92	55	79	60
GTAGTGCGAAAGAAGT	alt_2061_negative	3	5	5	5	6	4	6	4	9	6
ATCGCTACAGGTCTCC	alt_2061_negative	15	25	12	8	18	8	22	17	25	8
AACTATAACTGTCCTG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TAAGTGAACGAGCTTT	alt_2061_negative	23	21	43	25	30	20	18	27	25	21
TCTGTTCCGCCCTTGT	alt_2061_negative	24	18	24	26	21	21	14	23	25	8
CACATATACGGTTCGT	alt_2061_negative	11	17	19	20	17	6	15	6	16	10
CTTCGGATACACAATG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GGTCGGACTTAAGCCT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTGGTCACCGCTTCCG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
AAGTCTCTTTAGGGTT	alt_2061_negative	42	54	55	63	53	44	63	49	46	46
GGATCTGTGTACCTCT	alt_2061_negative	0	1	3	3	1	3	2	1	0	0
CGCAGTCTAGACTGGT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TGGCGTAGCTGAAATG	alt_2061_negative	190	187	244	215	217	202	195	175	209	179
GCTGTGTAAGTCAAAT	alt_2061_negative	58	60	36	40	55	37	60	43	54	39
CGCTGTAATGTAAGTT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTCATCAGGACGGCTT	alt_2061_negative	17	18	21	22	19	14	19	26	29	22
CTGCGTAATATTTAAC	alt_2061_negative	67	77	73	75	84	65	106	65	70	62
ACAAGCTTGAGATTAA	alt_2061_negative	2	6	4	8	4	6	8	6	6	3
CTCAACACTTGTTCCG	alt_2061_negative	7	5	12	2	2	1	2	2	7	5
ATATCATGGGACGCTC	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CACTGTGACCGTTCTG	alt_2061_negative	5	1	3	10	9	8	7	7	9	7
TGTCTGCGTCTTTTAT	alt_2061_negative	7	4	8	8	6	1	5	6	5	4
GATCTTGCATTACGCG	alt_2061_negative	1	1	2	3	2	1	2	1	1	1
GAGACCCGACTCTACC	alt_2061_negative	9	13	5	12	13	6	15	7	12	10
ACTTGCGGAAGAGACG	alt_2061_negative	70	64	64	59	56	52	64	47	60	52
CCCTCCGTCCTGGCAG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CAATAGGCATTGTGAA	alt_2061_negative	53	51	68	40	74	43	78	58	72	50
CCCGGTCAATCGACCA	alt_2061_negative	9	18	14	11	23	9	18	3	18	13
GCATTATAGCATGATT	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TATCAAGATTCCCAGT	alt_2061_negative	17	26	40	23	22	21	28	37	25	15
CACGGTATGGGAAAAT	alt_2061_negative	47	47	44	39	40	44	39	37	38	25
CTTAGTGATAAACGTA	alt_2061_negative	13	18	14	13	20	10	18	11	19	15
GCGTAATATACAGCCT	alt_2061_negative	91	116	115	89	95	79	121	76	122	89
CTGGTGCCACCGTTTG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CAGCTGTCTCGCTGGA	alt_2061_negative	14	19	21	18	25	10	13	20	35	14
CATCATGGTTGCGCCC	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
AAGGTGTTTCGTATTT	alt_2061_negative	30	27	29	15	28	17	20	5	25	12
ATTAGCACAATATGGC	alt_2061_negative	7	3	4	4	5	5	6	1	10	4
TGTACGGAGCTGAGAG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
TTTGCGGTTTCGACCC	alt_2061_negative	28	36	30	39	34	31	52	33	44	32
AGTCCAATTGTCATAA	alt_2061_negative	63	73	72	66	65	54	75	62	85	48
TGGTATCTGCCCATCT	alt_2061_negative	16	9	17	10	14	22	15	17	14	20
GATAATACGGTGTTGA	alt_2061_negative	7	6	9	12	10	15	8	19	12	7
CCCTGTTCTGGTGTCA	alt_2061_negative	17	24	12	12	27	8	20	6	19	8
TTTACCTATCCGTGTT	alt_2061_negative	6	12	9	5	9	3	7	4	4	1
GCGCGGACGTAACCGG	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
ACCAGAGACTTGCAGC	alt_2061_negative	6	11	12	11	12	11	5	5	13	4
AGCGCGGCTTTATCTA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GTACCGGGTAAGTCCG	alt_2061_negative	19	13	17	19	18	11	15	16	26	14
TTTCCGCGTTCGGTTT	alt_2061_negative	117	105	132	133	91	127	109	108	130	103
GCTAATCTGGGCTAAG	alt_2061_negative	2	8	9	5	7	6	8	4	3	7
CTCGAGATCCACTCGG	alt_2061_negative	22	20	21	18	13	14	19	18	14	14
TTGTGGTAAATAATCG	alt_2061_negative	11	24	18	15	22	13	19	17	21	13
TTGGATGGCGAAATAA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
GGGCTGCCATATTTTT	alt_2061_negative	12	7	10	20	7	13	8	8	6	14
ATGCGATTCGGCACAT	alt_2061_negative	15	9	24	16	11	18	28	13	22	17
TTTTTGTTGCCATCTT	alt_2061_negative	22	35	43	38	52	41	48	31	55	32
TGAGTAGAGTACAGCG	alt_2061_negative	51	72	59	63	69	54	59	55	74	44
TTTTCAAACCTTGACC	alt_2061_negative	9	17	19	13	6	17	11	8	21	14
GTAGGCGAGTAGAGTA	alt_2061_negative	0	0	0	0	0	0	0	0	0	0
CAGTTCTACCTCCTCT	alt_2061_negative	5	8	6	7	8	1	10	2	6	6
CCTCAAAGTATGGAGC	alt_2061_negative	10	12	14	10	11	20	6	14	15	7
TTTTAATATGGCTCCA	alt_2061_negative	15	11	17	17	17	14	10	18	23	17
CCTGCTCAGGTTGATT	ref_4645_upstream	4	11	12	7	19	1	18	2	7	10
TACAAACCCGGAAGGG	ref_4645_upstream	11	13	9	13	12	19	8	10	15	11
CTGCGGCGATCCATTT	ref_4645_upstream	24	24	29	14	19	18	19	20	18	17
TATTTAGTGCTAGGTG	ref_4645_upstream	18	34	25	18	23	17	27	15	37	16
GCTATGACAGAACTGT	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GGTATTTCTGATTAAG	ref_4645_upstream	3	4	12	4	7	8	13	8	11	9
CGTGCGCTCATGCTTA	ref_4645_upstream	16	93	15	18	80	9	81	15	89	9
GTACAAGCTTTAATCT	ref_4645_upstream	39	40	46	37	58	39	48	36	62	35
GTTCAGGAATTACTAC	ref_4645_upstream	73	106	98	68	91	65	121	68	99	73
GGCCTTGCTGACTCGT	ref_4645_upstream	54	53	57	51	57	53	59	37	65	44
CGATTTCCCTGTCAAC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAGTGATTCGACT	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TGATACTAAACAGTCC	ref_4645_upstream	81	118	98	101	127	80	102	64	123	68
CACTACTAACCCTCCA	ref_4645_upstream	39	64	45	36	70	31	71	41	64	21
GTGGTGTATGGCATTC	ref_4645_upstream	42	59	37	28	70	31	56	45	51	28
TTCGGTCACGACGGCG	ref_4645_upstream	14	14	16	6	6	18	10	10	12	7
ACGAAACGTCTTCCTG	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GTAGCTAAGATATTTG	ref_4645_upstream	58	120	77	68	90	70	100	78	112	72
GTGTAAAGCTCAAGCA	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GTAACAGTGCGTATTT	ref_4645_upstream	38	66	40	49	67	29	75	44	67	33
TCTATAGGTATACCAA	ref_4645_upstream	31	46	38	36	54	27	39	39	35	31
GGCCTTCGCCGTGGAA	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCTCGGGTCACTT	ref_4645_upstream	49	46	50	56	39	36	42	41	52	32
CGGGCTGTACGTTGCT	ref_4645_upstream	10	5	12	14	8	11	16	6	8	14
CCAAGAGTTCACTGCA	ref_4645_upstream	6	13	2	10	8	2	9	5	3	4
TGGCACTCCGTCCCTA	ref_4645_upstream	11	12	10	8	12	11	16	12	14	8
TGAGAGGGGTCAAATT	ref_4645_upstream	60	84	58	51	62	53	84	55	69	42
ATCTTTTGCTTAGACA	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TACCTCGAGCCAGCGA	ref_4645_upstream	10	23	19	22	20	11	20	12	20	14
ACGTTGTCAGACCTTT	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
AGTCCCCTGTATTATG	ref_4645_upstream	31	49	45	41	47	26	43	22	66	26
GCTGGTCTATCTATTC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTAATCGGGAAC	ref_4645_upstream	5	22	15	14	19	7	16	15	27	14
TCAAACGAAGTTCTGT	ref_4645_upstream	6	19	21	13	20	19	20	14	17	6
TTACTCCTTATAGTGC	ref_4645_upstream	6	12	3	3	9	1	9	5	11	2
CCGGGATGGATTCGGC	ref_4645_upstream	6	17	14	12	13	12	17	11	20	10
AACGGGAGGACCGCTA	ref_4645_upstream	29	47	40	35	39	16	58	31	42	26
GTTTGAAGTTCTCACT	ref_4645_upstream	10	20	16	8	11	11	16	14	25	6
CCTACAACATTCTGGC	ref_4645_upstream	6	10	8	8	13	5	18	9	16	12
TCGATGTGTACGGGCT	ref_4645_upstream	53	56	70	43	58	36	50	40	63	34
GGGACTCCCTTTGATG	ref_4645_upstream	17	28	23	20	35	16	29	16	24	15
GTTACTCGACAGTTCC	ref_4645_upstream	6	10	8	3	5	6	8	2	5	8
TTCCCGTTTGAATTGA	ref_4645_upstream	10	12	16	14	33	5	19	4	12	12
GTTCTCTTTTCGTGTA	ref_4645_upstream	22	37	46	18	30	30	30	29	45	18
TTCGCATTAAGTTTGC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTCTTTGCTTGGG	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TGAAATGGACGTGGCC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTTATCTTCTTCG	ref_4645_upstream	7	11	6	4	4	6	5	4	8	2
TGTAGATAACGGGAAC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GGCCCCCTCGAGAACT	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
AGCACCGCGGTTTTAA	ref_4645_upstream	12	11	27	15	13	17	22	9	16	11
TCAGTTGTGTTAACTT	ref_4645_upstream	123	162	143	106	184	127	168	110	215	102
CTCCGTGTGATTTATA	ref_4645_upstream	86	102	91	60	88	86	92	55	106	69
GTTGCTGCAGTCACTG	ref_4645_upstream	25	30	36	30	36	39	40	15	33	19
GTATCAGATGTCAAGG	ref_4645_upstream	32	36	38	23	35	31	47	21	44	22
GTCCTCGTTTAGCCTT	ref_4645_upstream	29	19	14	14	17	21	25	16	18	10
ATACGATATAGAGGGC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TTACATTTACCTTAAC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
ACTATGGTATTCTTTC	ref_4645_upstream	46	50	57	49	70	42	53	40	47	46
TGTGTGGCGGAAATAA	ref_4645_upstream	14	9	5	10	4	9	15	7	11	7
TCAGTCTCCCCAGTAC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGCGTAACTGCTT	ref_4645_upstream	4	7	4	4	8	3	6	3	12	5
CGGTCCTTTGGGAGCT	ref_4645_upstream	17	24	27	25	24	19	26	12	29	16
GTCCTCTACACATCTT	ref_4645_upstream	23	33	24	29	37	22	30	17	28	19
ATTATACTCGTCAGTT	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GCCCCTTAATAAGGAG	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
TAGATCTATTACATTA	ref_4645_upstream	92	100	89	97	103	81	113	86	124	80
GTGCCGCGGTTATCTA	ref_4645_upstream	27	32	34	36	34	25	44	21	50	11
CCCCGCCAAATACCCT	ref_4645_upstream	21	62	37	23	59	22	56	9	60	16
GCTCCTCCTGACGTAC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
ATGATTGCGGTGTAGA	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCGCTATGACAGA	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
AAGTCTTGATTGTCAC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
CCACTATTAAATCCCG	ref_4645_upstream	16	51	36	29	47	31	52	28	40	22
TACAATATTCAGTTCT	ref_4645_upstream	17	25	40	34	31	25	32	20	30	18
GAAGTCTGCAAGTTCA	ref_4645_upstream	54	104	62	55	89	55	87	54	109	64
GGTAGTAGCGCTTACT	ref_4645_upstream	33	44	39	46	44	45	60	31	54	39
CCCGTCTCAGCTTCTT	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTGCGATGGTACT	ref_4645_upstream	39	44	51	38	30	36	43	26	61	25
ATTGCCCACATTCGGC	ref_4645_upstream	29	27	40	28	39	28	36	26	51	23
CGCATTTGTTGGACCG	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GTTATTTGGCTTCGTC	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCTGACATCGGAA	ref_4645_upstream	29	42	29	21	30	41	63	26	33	23
TGGTGCCATAACACTG	ref_4645_upstream	13	26	24	33	40	16	20	15	20	15
TTCTGGTCGCTTGTAA	ref_4645_upstream	29	44	53	38	52	32	40	24	57	30
TCGTATTAATGCCAGG	ref_4645_upstream	6	11	15	12	16	8	11	6	15	4
TGTTATAGTAGAATAT	ref_4645_upstream	0	0	0	0	0	0	0	0	0	0
AAGGCGCGGCTAACCG	ref_4645_upstream	30	34	35	47	39	38	38	40	54	36
CCTTCAAGTGAACCTT	ref_4645_upstream	10	16	13	10	13	8	10	7	18	7
CTTTATTCGGTTTGAC	ref_4645_upstream	82	91	118	84	127	86	106	88	103	79
TAGTTACGTAAGCGCC	ref_4645_upstream	12	12	11	24	21	15	11	11	15	15
GCTACCTGTTCGCCCC	ref_1338_fdr	22	24	22	21	31	26	16	21	14	18
CCTTAGTATAAGGGTG	ref_1338_fdr	86	76	84	47	82	78	86	52	85	66
CGCTAACCCTCGGAAG	ref_1338_fdr	58	60	74	38	65	55	62	41	63	47
CGGTGGCGTTATAATG	ref_1338_fdr	161	84	134	92	123	142	122	107	114	138
CTCACCGCTTTGACCC	ref_1338_fdr	9	18	12	10	16	8	21	11	8	5
GCGCTGAACAGTGGAA	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCAATGGTGCAC	ref_1338_fdr	75	48	88	56	49	54	45	64	59	53
CACCTGGTTTATTTCT	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
AACTAGCGACTCTGGT	ref_1338_fdr	1	1	2	1	0	0	0	1	2	0
TCCTTAGTGCTTAAAC	ref_1338_fdr	3	8	3	3	6	6	3	0	10	6
TCTTGTACGTTCGCAA	ref_1338_fdr	56	47	66	33	55	49	45	45	48	60
ATTAGTGAGTTCACCT	ref_1338_fdr	91	79	105	72	61	92	64	85	65	79
GTCGAACACTGGCGCA	ref_1338_fdr	15	9	18	15	8	12	19	16	15	8
GGATTAGGCCGCGTTT	ref_1338_fdr	89	57	106	62	35	66	64	62	61	82
TCACTTCTGGATCGCT	alt_1338_fdr	255	155	302	193	172	230	178	217	169	224
GTTCGGTCGGCACGCA	ref_1338_fdr	46	24	38	27	29	37	27	29	29	32
TCGATCCAGGTCGGCC	ref_1338_fdr	42	28	50	30	25	41	27	40	35	51
CTGGCTTGTACTCGGT	ref_1338_fdr	35	19	55	21	20	38	23	31	33	44
ACTGACTACTTGTTTC	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGTCATTCCGGCT	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTTGTGTACCTAA	ref_1338_fdr	37	20	36	16	16	31	23	22	18	18
GGTAAAGCCTCCGCAT	ref_1338_fdr	13	13	19	14	11	17	9	23	12	13
CGCTATCCGCCACAAG	ref_1338_fdr	141	106	159	102	90	134	89	97	94	106
TACGTGAGGGTTCTGA	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
TTCTATATTAATTCAA	alt_1338_fdr	450	66	488	342	72	390	55	338	68	432
TTGGTCCTCTTGGAGC	ref_1338_fdr	153	84	173	109	111	129	100	115	118	150
GTCTAAGGGTTGCCAC	ref_1338_fdr	81	58	87	59	59	53	51	64	65	60
ATTCTGTCACGTAGGG	ref_1338_fdr	66	46	92	46	39	54	40	65	40	67
GCGGCATTAATGGTAT	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGCCGTTCCCCTT	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCTAAGGAGAGCA	ref_1338_fdr	30	14	25	14	17	22	16	21	17	24
ACTTCATTCCTGAGCA	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCCCTAGCCGCC	ref_1338_fdr	21	18	24	11	26	8	17	22	11	15
TTGTTTCGTTGCGGTG	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTATGATACAAG	ref_1338_fdr	66	28	53	41	30	33	33	39	33	39
ACACGAGCAGTGCCGG	ref_1338_fdr	72	64	72	61	74	56	72	56	83	71
TGGTGTCATTATAAAC	ref_1338_fdr	11	9	17	3	12	17	12	8	16	12
AATTTGCTACGACGTT	ref_1338_fdr	57	29	66	28	45	62	32	55	30	50
AACTTTGATTTAAATG	ref_1338_fdr	242	164	250	169	132	189	172	193	176	173
AGTCTTCATGCCTATG	ref_1338_fdr	33	25	40	31	25	31	23	36	27	33
GTGTCGATGCCGATCC	ref_1338_fdr	13	13	15	9	5	12	7	9	11	11
AGTCATGGATGTGGTT	ref_1338_fdr	33	14	35	21	12	22	15	24	15	32
AGCCAGCTCCGGCTGG	ref_1338_fdr	23	13	17	10	17	24	13	18	20	28
CACCGAGCACTATTAG	ref_1338_fdr	90	59	86	69	60	64	54	48	54	62
CAAGTACTTTACATTG	ref_1338_fdr	142	77	134	82	77	108	62	102	98	95
GTGTCATTTGGCAGAT	ref_1338_fdr	23	11	26	16	20	29	20	14	25	25
CGCTTGTTTTCTACAC	ref_1338_fdr	43	38	49	28	31	43	23	42	41	40
TCACCGACTGCTGAAG	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
TCTGAGGGTCTGATTC	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCACCATATATAT	ref_1338_fdr	33	28	32	22	30	40	41	31	38	26
ATTATCCGTATGTAGT	ref_1338_fdr	33	10	15	12	4	20	18	12	15	11
CTCATTCCTCAATTGT	ref_1338_fdr	31	28	44	24	24	24	25	19	19	24
TGATGCGGTTGGAAAT	ref_1338_fdr	51	26	46	34	15	52	31	25	27	40
GGATCGAAGCAAGATT	ref_1338_fdr	62	51	86	71	69	65	62	68	67	72
TTAACATTGAAGTTAC	ref_1338_fdr	75	55	84	65	60	75	50	54	51	75
AAACTTGTGCTACGAT	ref_1338_fdr	9	7	12	8	5	14	7	9	8	8
TGGTCATCGACGATTA	ref_1338_fdr	42	21	57	32	34	37	39	26	25	41
CTGTTGCTCCGTATAA	ref_1338_fdr	104	72	123	73	69	107	52	75	67	82
CTATCCAAGTATCGAG	ref_1338_fdr	8	11	21	11	18	13	12	15	26	13
TTTCGCCGATTTGCGT	ref_1338_fdr	59	37	55	42	31	55	38	42	39	48
CCTGATTATAATGTGT	ref_1338_fdr	226	184	215	156	145	180	155	133	159	191
TTTTTTCTTGCTTTAG	alt_1338_fdr	740	84	825	501	89	625	96	541	114	637
ATTGACGGCTATACAG	ref_1338_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGGTCACGAAATT	alt_4645_reverse	3	14	7	5	7	3	6	4	4	3
CTTTTCAAACCTCTCA	alt_4645_reverse	33	54	47	45	51	43	51	37	58	39
TCCCTTCCCGCGTACC	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
TTAACGCTCTGGAGAG	alt_4645_reverse	34	84	41	28	86	37	84	51	76	44
TGGCGCGAGGGGTAAT	alt_4645_reverse	12	5	6	10	7	6	8	3	3	11
GTTCCGTGTCCAAAGC	alt_4645_reverse	64	84	66	75	85	64	104	68	116	50
AACGGCTTAGACCTAA	alt_4645_reverse	38	50	48	35	45	36	42	44	42	22
TTTACTGGTAGGCCTA	alt_4645_reverse	32	31	40	37	34	24	51	29	44	27
TTAGGAATGTGCTGTG	alt_4645_reverse	30	55	53	32	50	33	42	44	51	43
CAATGCTATGAACGGT	alt_4645_reverse	62	63	58	61	41	38	73	44	68	36
CCTCGCTCTGTAGATA	alt_4645_reverse	24	48	23	14	30	23	32	26	35	21
AGGGGTTCTCACTTTC	alt_4645_reverse	22	48	44	38	35	37	50	35	51	35
TTATCCACCATTGCAT	alt_4645_reverse	12	13	16	12	11	7	17	7	15	10
ACAAGTACCCCAGCTC	ref_4645_reverse	21	51	35	36	44	17	50	27	44	24
TGTGTATGTCCTTCGG	alt_4645_reverse	18	19	19	20	22	20	25	14	29	23
CCCCTCCTTGGTCTAG	alt_4645_reverse	60	71	62	47	55	64	87	46	56	46
CACTTACTTGGGGGAG	alt_4645_reverse	47	99	57	51	115	46	90	37	104	47
CTCAGTCACCTGAGGT	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
AAATCTAGTCCGTTTC	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
CGGCGCTCTACAAGGC	alt_4645_reverse	50	55	61	51	51	60	60	40	61	48
CAACACACTTTCCTAT	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
GGACAAGCCTCAGGCT	alt_4645_reverse	20	25	24	25	20	20	25	20	32	23
GGTCTGCCTTATGATG	alt_4645_reverse	0	9	3	1	9	3	7	1	3	2
CCGGTATCTGAGTGCT	alt_4645_reverse	2	34	10	7	15	1	23	3	17	3
CGCTAACTGGGCTTTT	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTTTATCAACGAC	alt_4645_reverse	7	9	8	6	10	10	19	11	10	13
TGCCGTCTATTCTTAT	alt_4645_reverse	17	49	41	27	37	27	41	23	46	32
GACCAGCTGCCGATAT	alt_4645_reverse	15	15	13	15	15	10	26	12	23	15
TACCTTTAGTTTAATG	alt_4645_reverse	24	44	24	29	33	15	30	17	38	21
CTTCAGCGTAATATAC	alt_4645_reverse	14	27	16	11	19	20	23	18	29	16
CGCAGTGTTTATTAAT	alt_4645_reverse	21	48	37	28	24	27	44	29	42	17
GGTCCACATTTCGAAG	alt_4645_reverse	74	86	89	73	108	71	94	72	70	69
CGGCTTCCATATCATC	alt_4645_reverse	30	39	29	29	42	30	42	26	34	26
AACTAACGGGCCCTCT	alt_4645_reverse	114	215	165	171	176	124	189	140	187	149
AATAAATGAATACAGG	alt_4645_reverse	2	8	10	3	9	10	9	6	9	3
TCATGCCGAAGATGCG	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGTCCATGGCTCA	alt_4645_reverse	16	31	17	20	20	20	17	19	36	10
GTGGACGATAATCGAT	alt_4645_reverse	56	69	72	67	77	57	53	47	93	53
CTAGCCAAGCTTAGGG	alt_4645_reverse	5	8	3	5	5	2	8	3	8	2
CGGCTTTCACAGTGGT	alt_4645_reverse	56	66	57	55	86	51	70	47	79	49
CGTTCTATTAAGCGTT	alt_4645_reverse	7	10	11	13	10	7	5	6	16	11
TCCGGAAGGCCGCAAT	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
GTGCTTTCACAGTCAA	alt_4645_reverse	4	8	9	6	10	7	18	12	9	1
CAATGCCTTTTCACCA	alt_4645_reverse	2	0	1	1	1	3	5	3	1	7
TAATTCTTCTACCGCG	alt_4645_reverse	20	24	23	25	34	20	20	17	18	26
GGGCTACCATAATACC	alt_4645_reverse	13	11	10	15	17	5	16	12	14	11
TTTTTTAAGATCGTGC	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTGTGGTGATCCG	alt_4645_reverse	63	64	74	59	77	49	63	70	61	42
GAATGAGTATTCGCGA	alt_4645_reverse	17	38	33	28	18	27	37	18	31	18
GGTCTAAGATGGTACT	alt_4645_reverse	30	54	34	37	33	25	45	25	45	26
ATCAAAGAAGTTCTCG	alt_4645_reverse	20	23	23	20	29	19	33	26	25	21
CGCAGACTTAGGCCAC	alt_4645_reverse	56	113	63	56	120	62	149	42	107	49
CGTATGTCACCACATA	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTAACCTACACAG	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
ACATGGTGCACGTGGG	alt_4645_reverse	44	61	64	54	53	63	54	53	54	39
CGAACGCATGTTATAA	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
ATAACTTTCTTTACGG	alt_4645_reverse	8	7	10	6	7	12	8	4	5	3
GCAGGAGACGTTGTTT	alt_4645_reverse	2	3	5	4	6	1	4	3	2	4
CCCAACAGTCAGACAC	alt_4645_reverse	24	30	28	31	32	21	33	27	41	35
TGCCCTACTTGGCTTT	alt_4645_reverse	11	5	7	12	19	3	18	3	10	5
TTTGTTTAGTATGTTC	alt_4645_reverse	162	244	218	165	271	145	266	146	239	145
TGTGCTCCTTCCCGCA	alt_4645_reverse	11	22	16	10	13	12	11	8	16	17
GGTTCGCTATCAAAGA	alt_4645_reverse	24	25	25	24	36	32	37	28	51	28
CCATACTGGCTCTCAT	alt_4645_reverse	3	6	7	6	9	5	12	7	15	6
CTTGGATTTTACTTAG	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
TTGATCGTTCCTTATA	alt_4645_reverse	27	34	30	20	41	16	38	42	34	35
TTCGCTGTTATGGATA	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTGCTCTGCACT	alt_4645_reverse	49	67	55	55	87	45	85	61	86	49
CACAGCTCAGCGACTT	alt_4645_reverse	0	0	0	0	0	0	0	0	0	0
CCCCTTAATTGTATAG	alt_4645_reverse	33	52	43	46	50	27	60	30	75	33
TAGCTCCAACGCACTC	alt_4645_reverse	44	78	73	67	87	41	80	55	82	45
TATTCTCCCCGTCCTG	alt_4645_reverse	2	4	2	3	9	3	4	0	5	2
GGCGAATATGGCTGGT	alt_4645_reverse	8	6	13	13	5	7	6	10	11	7
TGTCACTCCCCGGTGC	alt_4645_reverse	5	34	2	4	35	1	49	5	38	4
CATGGATATCCCAGAT	alt_4645_reverse	5	16	9	6	15	9	14	12	10	8
GATAATGTGCGCTGCC	alt_5697_new	22	32	33	31	40	27	43	37	29	22
GATTTTTGGGCAGTGA	ref_5697_new	112	179	162	93	193	130	236	120	200	120
GGTTCACCATTAGTAA	alt_5697_new	9	11	10	11	10	12	5	8	18	10
GGTGCGCACTTACGGT	alt_5697_new	22	56	20	25	54	25	45	17	49	18
TAGCGGTAGAAACATC	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GGAGGAATCAGCCCCG	alt_5697_new	133	191	164	115	193	132	167	112	218	108
TCTACAATCCGTCCCC	alt_5697_new	11	8	8	12	12	8	10	16	14	5
GTTGAGCTTTATGTCA	alt_5697_new	0	0	0	0	0	0	0	0	0	0
TATTTTCTTTTTACGT	alt_5697_new	2	1	1	1	1	2	4	0	5	1
GTACAGTCTGTCCATT	alt_5697_new	11	16	10	20	14	11	23	10	19	11
TTGTTCGTGGTGGGGC	alt_5697_new	82	151	106	114	159	107	152	74	151	84
TATGATAGGGCATCTC	alt_5697_new	25	31	29	33	39	24	61	25	43	20
TACGTACCTACAGATA	alt_5697_new	1	1	1	2	3	0	3	0	2	0
TCATGTTCAGACATCT	alt_5697_new	30	56	45	34	60	47	62	33	77	41
CATTACTTTCTACCCG	alt_5697_new	22	69	21	20	61	23	51	27	59	11
GCTGACTTCGAGAGGG	alt_5697_new	0	0	0	0	0	0	0	0	0	0
TCCTTGGTTCGAGGAT	alt_5697_new	21	36	25	14	31	24	33	21	27	16
GTCCCTATAAAATTGT	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GCGGTTTGAGGAGTAG	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GATCCTACTATTGGCA	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GATATGAAAACACCTT	alt_5697_new	19	42	32	24	33	20	50	26	41	13
AGACGACGCATCGATG	ref_5697_new	90	138	111	118	111	99	130	92	142	87
GTCTGTCGTACCGGTT	alt_5697_new	1	3	0	2	0	2	0	1	7	0
AGGTGTACCCCCACTG	alt_5697_new	28	55	50	24	67	39	68	36	61	48
TTCTGCCATGGTCAAA	alt_5697_new	151	220	195	176	236	134	246	137	231	146
AAGAAGATCCGTTTCA	ref_5697_new	116	137	127	108	160	105	165	91	160	91
ATCTAGGCTGCATTAG	alt_5697_new	152	334	184	161	333	144	344	150	354	137
AACCACTCCCGCCAGT	alt_5697_new	1	7	7	4	14	4	14	2	12	5
GTCCTATTTATCGTTG	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GGTTGATTCCATTGTG	alt_5697_new	10	17	27	19	14	16	17	10	16	13
GGCTTTGGACCGATCG	alt_5697_new	3	7	2	10	5	9	12	4	7	5
CCACGATTTCATAGAT	alt_5697_new	0	0	0	0	0	0	0	0	0	0
CTCCACAGATAGGGAA	alt_5697_new	9	24	17	10	25	16	23	13	29	11
TTCGGCCTTTCCGAGC	alt_5697_new	0	0	0	0	0	0	0	0	0	0
ATCTGTTCGTTACAGA	alt_5697_new	19	14	13	15	21	8	18	12	9	6
CACCACAGATATTACT	ref_5697_new	2	6	12	7	12	3	3	2	5	4
CCCTTCGTCGTTTTTT	alt_5697_new	0	0	0	0	0	0	0	0	0	0
AACCCCCGTAGCGCCC	alt_5697_new	0	0	0	0	0	0	0	0	0	0
TAACACGAAAGCTCCT	alt_5697_new	67	74	72	54	96	58	82	57	75	60
TTCTTTATTATCTTCC	alt_5697_new	23	29	30	27	31	28	47	21	35	27
ATCACCGTAATTCTGT	alt_5697_new	0	0	0	0	0	0	0	0	0	0
TGGGGCTTTCCTCCAT	alt_5697_new	25	16	22	19	26	22	27	38	22	24
CGTTTACTTATGAAGC	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GTTTTGGACCCAACTG	alt_5697_new	114	184	167	150	196	118	213	108	205	126
GCACGCTTAATCTTCG	alt_5697_new	7	14	13	9	14	8	20	14	17	6
TGCGGGTTACCCCTCG	alt_5697_new	0	0	0	0	0	0	0	0	0	0
TTTGTGCGCTATGGGT	alt_5697_new	29	30	25	17	43	22	32	16	34	13
GACCTTCCGAGCTTGT	alt_5697_new	6	7	19	9	12	14	11	4	21	5
GTAATCATACCGATAC	alt_5697_new	15	33	21	13	24	16	27	18	30	15
GAAACATAATACGACA	alt_5697_new	40	77	62	55	63	51	57	43	74	42
TGTTGGTTTGTTATCT	alt_5697_new	0	0	0	0	0	0	0	0	0	0
CCAGTATCTTAGAGAA	alt_5697_new	297	460	357	271	487	262	504	280	493	250
CCGCGCTCGTCGACAT	alt_5697_new	17	17	13	11	16	10	19	10	11	4
CTGTATAATGGGGTCT	alt_5697_new	7	20	6	8	14	9	7	13	14	5
CATACCCACAGGAATG	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GTACATATCAGGATAT	alt_5697_new	0	0	0	0	0	0	0	1	0	0
GATCATATAGCTTTGA	alt_5697_new	0	3	3	7	2	5	3	2	5	5
TTCCTGACCTGCGATC	ref_5697_new	15	20	14	13	25	15	24	18	24	7
GTTAGGGCTTCTTTTA	alt_5697_new	15	27	18	21	33	18	27	14	22	11
ATGTCGGTGAAATGCC	alt_5697_new	5	5	10	3	1	3	4	2	6	1
ACCGTGCATTGGGTCG	alt_5697_new	15	50	26	20	42	20	54	23	51	15
GCGGGCCCACCATGTT	alt_5697_new	36	48	45	36	52	32	42	32	49	29
TAATGCGAATTCTAAT	alt_5697_new	76	96	59	52	81	57	74	46	95	51
TACTTGATTTGCTGAG	alt_5697_new	193	262	236	204	258	196	291	196	308	169
TGGAATTCAGAAGCTG	alt_5697_new	86	120	117	88	117	90	130	82	154	63
TCATGTGTATTTATTA	alt_5697_new	9	22	10	16	23	12	30	9	25	11
GGCTTTGCCTCTAGCA	alt_5697_new	5	3	6	5	5	5	8	1	6	2
AACTTGCTAGGCGTCA	alt_5697_new	9	15	11	7	19	18	26	18	24	11
TTTCGAACGTTGGCCC	alt_5697_new	69	98	85	53	80	72	108	50	92	56
GTCCATATCAGGATAT	alt_5697_new	594	776	766	617	810	516	883	558	822	482
TTGGTATGTAGTCCAA	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GCAGTAGGGGACCCCG	alt_5697_new	23	47	24	31	29	25	42	15	37	22
GTAATCAGTTCCACAT	alt_5697_new	40	35	39	41	80	54	75	32	91	34
GCCTAATGCTGATCGC	alt_5697_new	0	0	0	0	0	0	0	0	0	0
CTGTCTGTAACTTTCC	alt_5697_new	0	1	1	2	3	2	2	0	2	0
CTATCGAAATGGTTCA	alt_5697_new	14	20	17	14	21	9	18	9	23	11
GACAATGCCGCTCGAT	alt_5697_new	0	0	0	0	0	0	0	0	0	0
GACTACCGGCGGCTGC	alt_5697_new	3	2	2	6	8	1	4	2	7	4
TTCCAACGAACTCTTT	alt_5697_new	35	42	30	31	44	26	33	31	30	24
CGGGTAGTAGATGTAA	alt_5697_new	5	17	6	12	20	6	31	7	17	13
CGGTAGCGGATCTCTA	alt_2378_fdr	10	5	13	22	7	9	15	13	10	18
TGCGACACCCATATTT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTTCCTGCCTTTT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GAGATTCGCTAGATCC	alt_2378_fdr	73	34	86	67	42	57	36	61	45	52
GTGCTTGTTCCATTTA	alt_2378_fdr	0	12	4	10	8	3	10	3	5	2
CTCGCATCTTCCCGCT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CCTCCCGCCTTTATTC	alt_2378_fdr	19	16	21	33	26	24	18	19	17	23
TCACTAGACACTAAGA	alt_2378_fdr	3	4	1	3	2	5	2	5	7	1
ACTCAGTCATCGCTCA	alt_2378_fdr	29	25	39	26	30	25	24	30	30	22
AAAGCATCACATGCTG	alt_2378_fdr	88	71	102	111	66	115	55	93	50	91
CGCTACTATATACACC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CGGCGCTTTACCTCGG	alt_2378_fdr	39	26	71	54	31	53	39	37	39	47
CGTAGTAGGGCTAAGT	alt_2378_fdr	72	49	93	100	48	56	45	64	39	63
TTGCTATAAGTATCTG	alt_2378_fdr	48	42	71	78	40	61	47	68	61	44
TCATCTTGAAACTTGC	alt_2378_fdr	91	48	111	59	35	81	35	62	49	75
AGTTTCAGGTATGTGA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CAACATTAACTCTTAA	alt_2378_fdr	6	4	15	17	7	13	1	13	6	11
CATATGCCATGCGAAT	alt_2378_fdr	27	23	27	20	22	36	24	25	32	26
TCGTGCTTGTTTAATA	alt_2378_fdr	119	95	132	153	127	126	120	146	124	129
GAATGGCATAATCGGC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGTGTGACCGATG	alt_2378_fdr	87	58	122	66	48	78	63	54	62	46
TCTGCTTCGTTCGACA	alt_2378_fdr	14	6	20	13	3	6	8	10	10	12
TTTTGGCACTGGTTCT	alt_2378_fdr	4	5	6	3	1	7	4	3	4	4
TAAATTCGCTTCTGTT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TCATCGTTCCTCGTTT	alt_2378_fdr	81	47	96	83	61	71	57	75	64	64
ATATCAAACGTCACAG	alt_2378_fdr	7	12	11	13	7	5	15	11	9	8
GTTTTTCTGCTCGCTG	alt_2378_fdr	5	6	6	6	6	2	4	4	5	2
CTCATACGGGGAGAGG	alt_2378_fdr	221	254	290	272	257	224	247	248	246	225
TTTTGGAGAGACCTGT	alt_2378_fdr	106	70	115	111	62	108	65	91	61	93
TGATCATTGGTTCTCT	alt_2378_fdr	17	17	20	22	31	13	13	31	21	19
TCATTGCAGCGGACTT	alt_2378_fdr	1	1	4	2	7	5	8	3	4	3
AATGTGGATCGTGCTT	alt_2378_fdr	12	10	11	9	9	14	6	10	7	5
GCATAGGCGGGATGCT	alt_2378_fdr	62	42	70	62	47	50	54	42	47	41
GCGTAAGTGTTTGCAC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
AAAAGGCGGGGCTTGG	alt_2378_fdr	22	25	47	45	36	29	25	38	31	27
TGATCGGTAAGGCCTT	alt_2378_fdr	48	41	69	42	36	51	31	55	34	39
CAGAACCTTGGTGATT	alt_2378_fdr	103	96	159	95	117	94	93	123	82	82
CGGTCAAGTCGTATAT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CGCTACTTCAGTATCT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CGCCGATCATTGCACC	alt_2378_fdr	2	0	0	0	0	0	0	0	0	0
ACCCTTGAAACTGTAG	alt_2378_fdr	13	18	29	27	16	15	15	16	12	17
GTACCGTCTGTCTAGC	alt_2378_fdr	51	23	42	39	43	41	42	58	49	32
TTGAATTTAGTTATGG	alt_2378_fdr	0	0	0	1	0	1	0	0	2	0
TGTTAAGTGGAGATAT	alt_2378_fdr	35	22	27	35	33	37	22	40	21	30
CTACAGCCGTGAACCG	alt_2378_fdr	28	40	39	36	35	38	26	34	29	24
CAATCGTACCTTATAT	alt_2378_fdr	13	16	9	5	9	4	5	4	9	8
ACGGACCACCCGCTGC	alt_2378_fdr	2	2	5	6	5	4	2	5	3	11
AATTAATTCGGGGCTG	alt_2378_fdr	97	68	113	98	60	80	67	98	84	81
GCGAGCATGTATGTTA	alt_2378_fdr	22	20	31	40	25	29	31	23	25	23
ATTTCTAGATACCATA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TATATTCGTCACCTAG	alt_2378_fdr	17	12	16	18	10	26	18	24	6	15
TCTCAGTAAGCGCTTG	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
ACCCGTTTCCTGCAAC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAGGGCACGTGAT	alt_2378_fdr	33	24	32	39	34	26	25	26	29	24
AAAATTTGTCTTTGGG	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TGCCACTGGTGCTATG	alt_2378_fdr	67	52	92	73	65	56	68	60	71	56
TTCCACCCCTTCCGAC	alt_2378_fdr	42	35	44	46	25	36	34	37	40	36
ATAAGGTTAGGACACG	alt_2378_fdr	15	15	18	20	15	14	13	12	22	11
TGTCTTTGACCTAATG	alt_2378_fdr	41	22	51	47	18	45	24	39	38	28
GCTTTACGACAATAGG	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTCATTGCGTCCC	alt_2378_fdr	49	58	65	55	41	51	31	61	50	57
ACCTAGAGAGCACTCT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTCTTGTGCTGTG	alt_2378_fdr	22	24	36	29	13	25	20	27	26	17
GCGGGTAGTGTGTTAG	alt_2378_fdr	55	43	102	90	45	82	70	78	62	61
ACCTTCTGATTCCTCC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GTTAAACATCCCACGA	alt_2378_fdr	12	23	35	27	9	15	12	16	32	25
TGCGATAGTTATTGTT	alt_2378_fdr	1	2	6	4	1	7	1	2	3	3
GCAGACTTTAATCTTC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GCCACTTAAGACTTTC	alt_2378_fdr	41	35	50	56	44	47	49	48	34	41
TACCTTAACGGGAAGA	alt_2378_fdr	62	30	62	50	33	44	34	64	45	46
GCACGAGCACTCACAT	alt_2378_fdr	19	16	23	25	20	16	14	20	17	24
TCCCGGCTTAGTTAGA	alt_2378_fdr	54	30	64	52	41	43	32	41	39	40
GCACGACCGGATCTAT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTTGGCTCAGTTT	alt_2378_fdr	18	12	19	18	7	9	15	15	13	11
AAGTTGTAGGTTGTTG	alt_2378_fdr	21	18	22	15	14	21	18	24	26	24
TTGCTACAAGGCCGCT	alt_2378_fdr	15	11	27	11	12	14	18	13	23	22
GCACTCGATATCTTCA	alt_2378_fdr	18	14	14	13	6	12	12	10	5	10
GTTCCGCGTTTAATCC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GAGGTCTTAAGAAAGC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
CGACGTGTTTAATTGG	alt_2378_fdr	21	10	24	27	13	16	14	9	23	12
ACGTTCCGGCATCGAT	alt_2378_fdr	174	116	241	183	95	172	111	163	126	177
GGTGGCTTACCTGTGA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GGAATGCCCACCCAGC	alt_2378_fdr	25	7	25	28	17	16	10	25	19	18
CGCACGATACATAATC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GGGTTGTCCCTCGTCC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGCAAGCACCTTG	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GTATCGGATTCGTGCT	alt_2378_fdr	50	23	109	64	43	82	65	62	46	54
TTGGGGGTGACCTTTC	alt_2378_fdr	10	3	7	8	4	8	11	7	4	10
AGTTCTACTGTGGGCG	alt_2378_fdr	34	26	30	35	25	26	16	34	16	16
CTATGAGGGTATTTTC	alt_2378_fdr	165	115	211	168	127	161	119	163	123	125
TTCGATAGCAGGATTC	alt_2378_fdr	109	54	148	86	60	92	82	106	73	88
ATTTACTAACATGTGG	alt_2378_fdr	8	13	14	9	6	7	9	6	11	13
AAGGTTTTTAAGAATA	alt_2378_fdr	62	47	83	97	48	77	62	56	70	46
GTGTGTTTGAGCTCTC	alt_2378_fdr	81	48	88	77	60	74	63	63	52	62
CGAATTATTCTGGCTG	alt_2378_fdr	74	47	115	72	62	58	44	68	61	69
TAGGCAGATTATCCCA	alt_2378_fdr	98	48	133	90	58	81	58	74	57	85
ATGGAATGAAAGCGGA	alt_2378_fdr	83	55	82	65	28	81	67	66	60	55
ATGAGTCTTCCGTCGA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
ATTCCAGTCAGCAGGT	alt_2378_fdr	60	32	59	64	51	43	44	62	42	44
CGCGTAAGTAATGTGT	alt_2378_fdr	150	126	193	128	121	170	128	159	112	164
TTGAAAAGTTCTTATT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GGTCCTGTAGGCTTGA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
AATCAGAAAGGCGACT	alt_2378_fdr	14	6	13	9	9	12	9	11	8	13
CATTACCATATAATTT	alt_2378_fdr	58	42	65	55	46	53	53	64	58	42
TTCCGGTCTAGTGGGA	alt_2378_fdr	16	20	37	8	15	11	22	7	19	8
GCGCTGTGAGGGGGTT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTAATCTCACTA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTAAACGTACTCC	alt_2378_fdr	75	64	108	103	66	74	58	83	74	57
GCTGGATATTTCTGAA	alt_2378_fdr	44	25	54	38	28	41	23	34	31	36
TCCGCTCCTTATGCGG	alt_2378_fdr	27	17	31	19	22	28	10	22	17	19
GCAGCAGCATTTTCTG	alt_2378_fdr	114	69	151	109	85	121	69	98	88	132
GTAAGGCGCGTGCGTC	alt_2378_fdr	52	34	60	45	35	33	33	32	37	41
CACCTGCTTGGGTTTA	alt_2378_fdr	11	8	19	18	6	9	5	4	11	8
GAGGTCGCAGAGTTTG	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTTCTAATGGTTT	alt_2378_fdr	14	20	27	23	13	15	13	22	21	15
ACGTTCATTTGTAACT	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTTTAAACAGAGT	alt_2378_fdr	20	10	16	11	6	23	12	17	11	15
TCTCGGCAGACATGTT	alt_2378_fdr	34	15	42	44	27	49	20	34	28	34
TCCTATAATAATCGGT	alt_2378_fdr	66	53	69	73	48	55	36	50	44	57
CCGGTGACTGATCACA	alt_2378_fdr	19	26	14	16	17	15	19	15	34	12
CAGGCGAGACATTAAC	alt_2378_fdr	25	22	36	34	19	19	22	49	18	24
TCACATATGTGAATGC	alt_2378_fdr	1	1	11	3	3	9	3	3	10	6
GTTGGCGGCGAACTCG	alt_2378_fdr	9	1	15	10	11	4	8	4	3	6
TTTCATCAACATGGGT	alt_2378_fdr	18	7	14	14	16	14	13	12	17	13
CTAATTTAAATGTGCT	alt_2378_fdr	46	36	82	60	44	61	42	61	40	81
CATGTTTGCACCACGC	alt_2378_fdr	68	58	95	61	58	72	51	77	62	73
CTGCTAAGGGTCTTTA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGCTTGAAGGGAT	alt_2378_fdr	58	85	95	89	92	104	108	74	121	73
CCAGGGGTTGCCTACA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TATTTGTGCAATTTCT	alt_2378_fdr	41	23	51	54	27	58	25	45	31	44
ATAGATGACTTTTTGG	alt_2378_fdr	23	15	32	32	29	25	18	16	21	21
CTTCGTATTCGCTCAG	alt_2378_fdr	29	32	47	38	36	44	31	36	38	24
GCATCAGTGTCAGGGT	alt_2378_fdr	97	78	121	90	88	77	79	95	75	109
TAAGATTCTTAGTCCC	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
AATGACCTAAGTTCGA	alt_2378_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTGTTTGCTCCGT	alt_2490_negative	9	30	9	13	32	7	22	14	27	6
GGAGTTCATAGAATCA	alt_2490_negative	3	8	2	4	3	2	6	2	5	0
GTGGCGAAGAACCATT	alt_2490_negative	18	48	39	26	59	27	42	28	53	26
GAGGTTTGATCTTATA	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GGCTTTGGGATCGGCC	alt_2490_negative	22	30	21	24	46	25	47	26	46	15
GATTGGTAACTGGGCC	alt_2490_negative	5	16	7	6	17	6	12	12	12	3
CATTAAAGTAATGGGA	alt_2490_negative	1	7	3	3	10	4	14	1	15	3
CGCTACAGCCACGCTA	alt_2490_negative	12	17	15	12	18	14	25	3	27	8
TGGTATCTCAGGATCG	alt_2490_negative	18	18	14	8	28	14	26	9	32	3
TACCGGATATGGATCC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
ATCTTGAAATCCCGGT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
CAAGGTTGATTGCGAT	alt_2490_negative	30	72	27	34	72	32	68	23	65	15
TACGGGAAGGCGCGGT	alt_2490_negative	4	10	0	1	3	3	5	0	7	0
ATTTGGTGTCCCGTGG	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
ACATTGACTATAATGC	alt_2490_negative	2	1	3	1	1	0	2	3	5	1
TGCTGACGAATTGTAC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
TTTTCGGTCCCCGTCC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
TGGCACTTTTGCATTC	alt_2490_negative	56	86	61	58	93	49	94	40	101	49
GTGCTAGTTGTCACGC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
CCATCGGCCAGCCCAG	alt_2490_negative	13	16	17	17	21	12	20	11	27	5
CAATCGTGGTTGGGAA	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
TTTGAGAGTGTGGACT	alt_2490_negative	0	0	1	1	1	1	1	1	3	4
GGCAACCAATCTTTGG	alt_2490_negative	24	70	35	31	88	37	92	24	96	34
TGAATCACGGTGCCTT	alt_2490_negative	10	27	17	8	15	6	26	13	18	17
TTTCCACTAGACCGGC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GGTACGGGTTGTACTT	alt_2490_negative	22	47	26	29	66	29	59	28	46	15
ACCCTCATTCTTCAAG	alt_2490_negative	1	14	7	11	14	6	11	4	14	3
TTATCGGACAATGCTT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
TGCGATTCAATTCCAT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
AACAATCATGCGTATA	ref_2490_negative	8	32	16	13	21	14	30	5	37	8
CGGTGTGACTGCGTTG	alt_2490_negative	8	12	17	8	9	3	13	4	13	3
CCCCTCTCCTTGTGCG	alt_2490_negative	5	5	4	6	10	4	7	4	9	5
TACGTGTCTCTCCTCG	alt_2490_negative	26	46	30	35	54	27	47	17	56	25
TCGGGAATATCGGCGT	ref_2490_negative	13	21	8	17	21	15	25	15	29	17
CTCCGAGGTGCTACTA	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GCGTGATATGGCTCAT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GTTGGAGAAACGTAGG	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GTGTTTAGATCGTATG	alt_2490_negative	42	97	58	43	123	51	117	48	118	40
ACTTCTCTCGAAGGTC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
AAGTCTGTTCGAGATA	alt_2490_negative	25	31	15	21	40	15	29	18	41	14
GATCCTAGGCTCAATA	alt_2490_negative	20	51	20	26	30	22	37	15	74	23
TGTTAGCTCTTTCAAT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
ACGAGCAATTTACGCA	alt_2490_negative	12	25	9	12	26	9	27	7	18	9
GACAAAGACGTTTTAA	alt_2490_negative	51	111	61	69	106	47	115	61	106	48
CTATAGATGCTGTCCG	alt_2490_negative	35	75	36	42	86	42	86	38	94	21
CCGCGGGGTCAAGCCG	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
AGTGGTTCTTAAATGG	alt_2490_negative	12	34	22	19	36	24	30	23	44	17
CGGCTCTTTATTGTTT	ref_2490_negative	76	62	86	53	63	65	79	62	82	45
TTCTACGGACTGGTAC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
AGCCTTTGACTGTCTA	alt_2490_negative	20	90	22	22	95	19	79	22	94	22
TGGTTTTTTGGGCTTC	alt_2490_negative	12	33	22	14	24	12	45	16	33	11
AAGCCGCACCACACTT	alt_2490_negative	11	52	18	16	42	15	54	21	49	15
ATATAATCAGTTCGGG	alt_2490_negative	3	7	3	0	13	4	12	0	13	3
ATTTAGACGTTGCCGG	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
TTTGTACTTAGGATCC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GAGTAAGGACGTATTG	alt_2490_negative	16	12	8	8	11	16	19	9	23	10
AAGCTTTGAGGTCATT	alt_2490_negative	5	6	3	9	6	4	10	3	13	5
TTTCTCACCGTATGAG	alt_2490_negative	5	25	8	12	26	8	26	2	30	2
TGTTGAACCTCATGTT	alt_2490_negative	6	7	5	2	13	6	13	2	8	7
TTATAATGGCTGTGCC	alt_2490_negative	8	21	10	8	14	10	20	10	7	8
CACGTGAATAGCCTGT	alt_2490_negative	9	10	7	3	10	5	6	5	13	8
CGTTTCTTGGCGTTAC	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
ACTTACGCGGTCCTTC	alt_2490_negative	3	10	5	3	12	4	10	2	11	2
ACGTAACCCCAAACCG	alt_2490_negative	1	4	3	1	5	2	4	4	4	1
TAATTAATTGTTCATA	alt_2490_negative	25	27	13	7	33	9	31	12	23	13
GTTGGCAGTTCTTTTA	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
ATCTGTATGGGCGACC	alt_2490_negative	3	16	12	3	16	9	11	12	12	5
GGGCGGAGCAGCGTTA	alt_2490_negative	6	4	1	0	3	1	0	0	3	2
GAGAGACGGCCTCCGG	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
CCGGGCCCTTTGTGCG	alt_2490_negative	0	3	0	0	0	0	1	0	0	0
GCACGGACACTCTAGT	alt_2490_negative	10	12	4	7	11	11	10	9	25	6
CGAACACTCTCGTGCG	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
TTTTCGTCTTAATGAT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GAGCGGTGACACCCTT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
CGGAAGTTTGGGTCCT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
CAGCACACTCCTTTCA	alt_2490_negative	1	16	2	0	11	0	6	1	17	1
GTTGGGGGTGGAGGTT	alt_2490_negative	19	25	22	11	19	17	12	19	29	19
GCCCGAACAATTATGT	alt_2490_negative	0	0	0	0	0	0	0	0	0	0
GGAGTGCTACATGCAC	ref_175_missing	27	28	24	21	35	24	29	30	44	14
GTTTCTGCTTCTGAGT	ref_175_missing	0	0	0	0	0	0	0	0	0	0
CCCCGTAGTATCGAGC	ref_175_missing	2	14	2	3	10	4	9	3	9	4
CAGCCGAGTAGTTTTA	ref_175_missing	0	0	0	0	0	0	0	0	0	0
GTATTGTAGTTGTGCT	ref_175_missing	0	0	0	0	0	0	0	0	0	0
GAATAATACCTCTTGT	ref_175_missing	10	23	24	15	15	15	12	10	29	12
CGTGCCGCTTTGCGAA	ref_175_missing	0	0	0	0	0	0	0	0	0	0
ACCCCCCGGATATAGA	ref_175_missing	9	10	14	19	16	13	17	12	15	9
GTTAGATACTTTAAAC	ref_175_missing	21	33	22	25	33	28	39	16	30	24
AACCCCATCGCCCCAG	ref_175_missing	0	0	0	0	0	0	0	0	0	0
ACTGCTTTTTCTCAAG	ref_175_missing	0	0	1	0	0	0	2	0	4	0
AATTCGGATCCAAACT	ref_175_missing	0	0	0	0	0	0	0	0	0	0
ACATTGGCTGTCTCAT	ref_175_missing	25	23	40	22	34	23	28	28	34	20
GAGTGAACGCTGTAAA	ref_175_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTTGTGAGGTTC	ref_175_missing	0	0	0	0	0	0	0	0	0	0
CGGTTGATGCCCCTGG	ref_175_missing	0	0	0	0	0	0	0	0	0	0
ACTGAGTATCCCAAGA	ref_175_missing	19	15	20	13	18	9	24	13	13	19
TCAGTTGTTGGAAAGG	ref_175_missing	44	69	58	42	76	30	85	47	71	38
GGGTGCTGGGTAGGGC	ref_175_missing	8	8	7	4	7	8	12	10	9	9
TTGGTGCTTACTGGAT	ref_175_missing	0	0	0	0	0	0	0	0	0	0
GAAGCAATGCCCTTTG	ref_175_missing	9	9	16	12	16	14	13	8	11	14
CCCATACTAGCTCTGC	ref_175_missing	25	28	38	18	37	31	37	20	27	18
AAAATAGTTGTCGAGT	ref_175_missing	3	7	6	7	9	1	14	8	11	6
CTAGACACTTGTTGCG	ref_175_missing	1	1	1	2	4	0	2	0	4	1
CGCAACCTCGCGCTCG	ref_175_missing	7	14	7	16	4	4	6	4	9	5
TGTATATCGTTCTTAG	ref_175_missing	4	3	6	3	2	5	1	6	4	2
ACTCGGCCCGCCCCTT	ref_175_missing	0	0	0	0	0	0	0	0	0	0
GGCTATTAAACAGTAT	ref_175_missing	17	32	17	24	31	18	39	23	21	12
GTGGCGTAATCCGGGC	ref_175_missing	0	0	0	0	0	0	0	0	0	0
GATCAATTGGGTTGCA	ref_175_missing	0	0	0	0	0	0	0	0	0	0
GTTGCCCGTACGATCC	ref_175_missing	6	17	13	8	4	7	13	2	10	12
ACTGGGCCTTTACTCT	ref_175_missing	7	12	11	15	16	16	13	19	10	4
ATGGTGCCCGGTTTCT	ref_175_missing	0	0	0	0	0	0	0	0	0	0
AGTCAGCATGTCCCAC	ref_175_missing	0	0	0	0	0	0	0	0	0	0
AATCGGTGCTGCTTAG	ref_175_missing	9	7	13	5	5	6	8	6	10	6
TGGTCGTCACAGGGAA	ref_175_missing	36	41	50	34	50	26	34	36	56	40
CGTGACACCCCTCCGG	ref_175_missing	6	15	10	14	28	12	21	13	17	10
AGCACGTTTTAATTTG	ref_5795_new	0	0	0	0	0	0	0	0	0	0
ACTTCGAGGTTCATAG	ref_5795_new	1	3	0	1	5	2	6	3	6	1
ATCCCCGTGGAGTTAC	ref_5795_new	6	8	2	1	9	4	5	6	8	1
ATTGCGCAACATACGG	ref_5795_new	20	47	27	23	48	21	76	21	49	9
CCTAATATTCGGGCTT	ref_5795_new	10	70	11	12	69	12	66	9	70	9
GCTACAAAAAAGTATA	ref_5795_new	3	15	9	5	26	10	13	4	21	6
CGTACCTCCTGTTTTT	ref_5795_new	0	14	1	8	11	2	16	0	7	3
CGGCTTACTCCTCACC	ref_5795_new	3	10	8	4	10	4	8	5	13	1
CCGGTCATATAGGAGG	ref_5795_new	0	0	0	0	0	0	0	0	0	0
GCCGTTGGACTTCTGG	ref_5795_new	2	8	0	5	7	5	8	4	6	5
GCAGCGTTGAACTATC	ref_5795_new	0	0	0	0	0	0	0	0	0	0
GGTCAGTGGGGGTCAT	ref_5795_new	3	17	5	4	9	4	8	2	10	6
TGTCTGTTTCATCAGT	ref_5795_new	0	0	0	0	0	0	0	0	0	0
ATAGAAGTAGTGTTTC	ref_5795_new	4	8	5	7	8	3	11	3	9	4
TACCCATGTCAATATC	ref_5795_new	2	12	1	6	8	2	8	2	10	0
GCCTGGGGTATAATCG	ref_5795_new	6	17	8	4	15	8	15	5	10	7
CTAGCACGTAGGTGTC	ref_5795_new	0	0	0	0	0	0	0	0	0	0
ATCAGTTCTCTAGCGC	ref_5795_new	17	31	12	10	25	12	42	10	31	11
TTGTGTTGGCTTACCG	ref_5795_new	4	31	9	8	38	11	33	6	37	7
CCTCCAGGGATAAGGT	ref_5795_new	48	111	50	44	96	52	71	44	85	35
GTCCGCACCAGCGTGT	ref_5795_new	19	24	4	9	28	7	21	6	30	10
CCTAGCAGCGTTTTAG	ref_5795_new	11	50	17	8	52	17	44	13	43	16
TATATTCTAACCTAAT	ref_5795_new	0	0	0	0	0	0	0	0	0	0
GTGCCTGTCCCACTTC	ref_5795_new	102	253	130	108	242	77	253	74	271	105
TTGTGGATCACATCAT	ref_5795_new	29	73	52	44	64	43	74	40	82	50
GCTTACTACTCCGTAG	ref_5795_new	12	43	9	10	35	11	43	15	53	11
GCTATTAGGCCTGCAT	ref_5795_new	0	0	0	0	0	0	0	0	0	0
CAACCTATGAATGGCT	ref_5795_new	13	47	28	22	68	19	50	22	75	20
CCAGCTAGTTCCTTCG	ref_5795_new	0	0	0	0	0	0	0	0	0	0
GACTGGCTTTTAGTGC	ref_5795_new	29	63	27	21	77	15	62	23	74	32
TACCACAAAGGGGTTT	ref_5795_new	0	0	0	0	0	0	0	0	0	0
TAGTCGGTGCCGCGCT	ref_5795_new	1	6	1	1	1	4	9	1	3	1
CCATATTAAAGCTCTC	ref_5795_new	0	0	0	0	0	0	0	0	0	0
CTAACGTGTAGATGCT	ref_5795_new	16	28	17	9	39	28	40	15	37	18
GAGGCTCGGTCACTGT	ref_5795_new	24	48	26	18	45	25	59	27	59	26
ATCGTGATCAGCGATC	ref_5795_new	0	0	0	0	0	0	0	0	0	0
TATTTTCCCAAGCTAG	ref_5795_new	19	23	9	15	31	13	19	8	19	7
TTGCACTCGGACTGGT	ref_5795_new	38	66	35	24	71	32	69	15	59	30
ACCGCCATAGCCTGTC	ref_5795_new	0	0	0	0	0	0	0	0	0	0
TTGAATCATCCCAGGT	ref_5795_new	0	1	1	0	1	0	0	0	0	0
TAGCCTTTCCGTCCCC	ref_5795_new	6	27	11	12	31	6	23	8	28	7
AATGGGCACATAGTCC	ref_5795_new	2	2	3	2	5	3	10	3	4	1
CTTCCGTTCGGACACT	ref_5795_new	0	0	0	0	0	0	0	0	0	0
TTTTATGGCTCTGCTA	ref_5795_new	0	10	0	3	3	3	10	3	5	0
CTGCAGCTGCCTATGC	ref_5795_new	0	6	0	1	1	1	5	4	4	2
CTTTTGGCTTGCTCAC	ref_5795_new	0	0	0	0	1	0	0	0	0	0
AAAACCGTACTTAGGG	ref_5795_new	8	11	6	3	14	3	10	2	9	3
GAATTTGATAGGGACA	ref_5795_new	0	3	0	2	4	0	2	1	4	3
TTATAGCTCTGCGAGC	ref_5795_new	15	28	24	13	26	5	52	12	37	9
TCACGTATTCTGTAGC	ref_5795_new	0	0	0	0	0	0	0	0	0	0
TGAGCTGTTCTTTCCC	ref_5795_new	9	20	12	10	22	10	32	2	31	4
GGGGGGCTTGGGTCGA	ref_5795_new	8	10	4	5	12	7	6	10	8	5
TCCGGGTATAGCGTTC	ref_5795_new	26	42	25	23	49	22	40	14	50	18
ATCCTGTAGGAATCAT	ref_5795_new	6	18	9	10	16	5	19	10	18	4
ATGTCTGCAGATGTTT	ref_5795_new	19	30	15	19	38	18	50	15	48	20
TACATCTTTATGACGG	ref_5795_new	20	41	37	22	52	32	47	14	41	18
GTATGAATGCTTATTT	ref_5795_new	0	0	0	0	0	0	0	0	0	0
GTCTTCTCTTTGAAAT	ref_5795_new	6	15	2	3	4	5	12	8	8	0
TCATTGTTTTTAGACA	ref_5795_new	16	49	15	17	54	16	57	19	53	19
AAGCCCGCTTGGTGCG	ref_5795_new	0	0	0	0	0	0	0	0	0	0
TTACGAACTCTTGATA	ref_5795_new	10	12	4	7	20	4	15	7	12	5
TTCGTGAATGGGCGTC	ref_5795_new	12	51	17	17	31	16	30	15	31	20
TGCTGTCCGCGCCAAA	ref_5795_new	0	0	0	0	0	0	0	0	0	0
CACGTCCCGCGGGCAT	alt_3673_RC	97	159	124	81	144	90	190	93	198	79
CCGCTGACTTTCAGTC	alt_3673_RC	4	17	2	1	14	7	14	4	9	6
CGCTCATATCTGGCAT	alt_3673_RC	1	8	7	1	7	4	9	4	5	2
GGATAACTGAGCCTGT	alt_3673_RC	29	39	28	33	56	22	43	26	43	29
TTACGCTTGTTCCGCT	alt_3673_RC	49	86	50	48	78	47	91	43	108	48
CAGCATTACATTCCCT	alt_3673_RC	22	60	14	21	47	23	57	14	82	10
GGGTCACCTAAGTGGC	alt_3673_RC	1	4	3	1	3	0	3	0	3	2
CCTTTAACGTGGCGTC	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
ATAAGACATGTTCTTA	alt_3673_RC	100	152	124	126	204	106	196	120	207	99
ACTACTCTCGTCAAGA	alt_3673_RC	6	20	24	16	21	6	25	10	20	11
TATTCGACTTACTCAG	alt_3673_RC	11	21	16	15	28	10	30	16	21	11
AGTGTATGCAACCAAC	alt_3673_RC	5	4	1	3	4	2	2	1	3	1
GAGCAGGATCCGCTCT	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
GGGTCCCCCTCTAGGA	alt_3673_RC	26	33	20	22	25	16	30	19	42	33
ATTCAGGTCCGGTTTC	alt_3673_RC	5	12	6	6	14	9	11	10	11	11
TACTGTGGCTATATTA	alt_3673_RC	17	41	29	21	36	17	33	21	39	12
TCTTCGAGTGCTTTTA	alt_3673_RC	15	6	10	5	9	11	21	8	16	9
TAATAAATGCACTATC	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
GTGCAGCGTACGTGTG	alt_3673_RC	13	18	11	7	20	7	12	7	14	9
TAGAGCGGGGGACAAC	alt_3673_RC	18	9	12	11	12	7	12	7	20	10
GATCCGGGTTATCACT	alt_3673_RC	2	2	1	2	5	1	9	1	3	1
CTGATTCGAACCACTG	alt_3673_RC	17	38	27	16	48	23	32	26	24	26
TACTGACAGACATTTC	alt_3673_RC	67	94	88	56	93	57	95	60	108	71
TTCTATATACCCAGGT	alt_3673_RC	0	9	6	0	7	11	7	6	6	3
TGCTCATGGGCCCTGC	alt_3673_RC	4	4	2	2	1	5	5	2	3	2
CATCCTAATTCCTTAG	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
TGTAACTCCCTCTATT	alt_3673_RC	6	31	6	4	32	5	29	5	28	8
AGGTACTCCTACGCTT	alt_3673_RC	8	10	4	4	5	2	10	4	5	3
ACATCTGTCGATGGCG	alt_3673_RC	52	44	48	50	64	40	78	46	69	35
ACCGTCCGTGGAGGGG	alt_3673_RC	15	31	14	14	19	17	25	14	28	8
GTCTTTAGAGTGAATT	alt_3673_RC	22	35	30	11	35	22	43	21	49	15
ACGTTATTCTATCCAA	alt_3673_RC	6	10	10	13	14	5	7	6	15	4
TAAGTAAGCCTACTTT	alt_3673_RC	8	2	3	4	6	0	1	0	2	3
AATATAGGTTGGTATT	alt_3673_RC	15	12	14	5	15	10	14	10	16	5
TCCAGCTTGAGAATTG	alt_3673_RC	66	106	87	76	121	60	129	65	117	57
CTTTCTCCTCCCGGTC	alt_3673_RC	20	58	34	48	43	38	51	22	61	20
CTGTGAAGTGATTTAA	alt_3673_RC	9	19	16	14	14	7	23	9	18	16
GGTAGCCCCCTGCCCG	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
TACTTTTCATCCGGTA	alt_3673_RC	18	35	23	12	26	18	32	12	32	12
TGTCGTTTTGAATGTC	alt_3673_RC	27	50	34	30	63	28	59	27	33	30
CATGAATCATGGGTTA	alt_3673_RC	29	34	30	23	48	34	40	27	42	39
AATTCACGGCGGCGTT	alt_3673_RC	30	31	33	23	45	14	25	22	43	18
CCCTACTCCAGACGCT	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
AGATCTATTACAGTTA	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
GTCTATTTAAGAAGGC	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
GCCAGTGCGCAGGTCC	alt_3673_RC	27	48	16	29	35	20	31	26	39	12
GAGCCTATCGTTACCA	alt_3673_RC	24	44	33	26	43	12	34	31	62	17
CGTTACAGTCCCGACA	alt_3673_RC	0	6	2	1	4	1	6	0	3	1
ATAAAGTGAAGGCTCA	alt_3673_RC	34	32	45	39	68	22	46	21	50	26
TCTAGTCTAGGTGACG	alt_3673_RC	11	18	13	13	24	15	14	7	19	17
TAATCATGTTTTTTTG	alt_3673_RC	138	205	186	154	207	172	229	157	249	123
AGATAACACACTATCG	alt_3673_RC	2	4	2	0	1	1	1	1	2	3
TTTTGTGGACCCGTAT	alt_3673_RC	24	31	25	20	33	19	35	18	27	14
TGTCAGTTGCCCGTCA	alt_3673_RC	33	59	33	40	56	38	51	31	58	49
GGCCAATTTAAGCTAG	alt_3673_RC	39	62	43	39	67	67	65	37	50	39
CAACATTGACCCTAGA	alt_3673_RC	77	114	62	71	122	61	130	68	135	69
CTGGCTCAAGCTTATG	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
CGCCGGCAGGATATTT	alt_3673_RC	49	105	76	64	96	48	90	52	103	36
GCATTACGCTCAGTCT	alt_3673_RC	37	66	43	42	67	44	79	55	91	28
TTTGCGGATATCAGCA	alt_3673_RC	20	31	34	13	28	25	39	24	33	26
TATGGCATCCGATCAC	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
CGCACAACTCAGGGTT	alt_3673_RC	13	15	9	10	22	12	17	9	18	4
CAACAAGGTATATTCC	alt_3673_RC	132	161	139	105	191	112	175	126	187	122
GTCTAGTATTAGTAGG	alt_3673_RC	14	41	23	21	33	19	29	29	28	20
GCAACCAGAGCTTTTC	alt_3673_RC	1	0	0	1	2	0	1	1	3	0
GCCAGGTTCTTCAAAA	alt_3673_RC	6	15	19	7	14	6	15	10	27	6
CTCGGGGTAAGAATAC	alt_3673_RC	84	164	94	104	184	82	200	80	187	88
CGTGTTTTAGCTAATT	alt_3673_RC	38	44	35	34	46	38	57	24	69	19
GGGCGTTCAATCTTTT	alt_3673_RC	51	89	70	45	67	58	91	38	93	46
TCCAAAAGATGTATTT	alt_3673_RC	54	86	65	49	114	48	98	34	105	32
CTTCGACAAGGGCAGG	alt_3673_RC	17	21	23	24	25	18	25	7	24	11
TTTCTTTTTGTTCTCC	alt_3673_RC	6	7	5	13	6	9	13	5	5	6
TATGTATTCACTGACG	alt_3673_RC	37	69	39	42	65	31	62	48	67	35
GACCTTGTGTTGGTTG	alt_3673_RC	4	12	8	11	16	10	14	10	18	7
GTAATGCGACGTGTTG	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCTAACCTACGC	alt_3673_RC	1	18	15	6	24	6	24	10	18	7
CCATACAGACTACGCT	alt_3673_RC	56	94	69	58	99	63	117	67	126	58
GGTTATCTAGAACAGT	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
TTCCCTTTGCGTGTAC	alt_3673_RC	13	20	5	15	23	6	21	16	23	4
AGGCCTTTTTTTCAGC	alt_3673_RC	4	5	5	0	1	2	5	4	4	2
TTACGAGATGGGCGAC	alt_3673_RC	33	42	37	39	43	31	47	38	48	23
TTCTTGGCGTTGTGTA	alt_3673_RC	24	26	34	16	32	24	44	27	41	23
TCTGTATTAGGTCACT	alt_3673_RC	458	796	572	480	786	448	816	464	884	502
GTAAGGTCATTATTAA	alt_3673_RC	19	39	34	15	26	17	42	16	31	16
ATCACAATATCCAGCC	alt_3673_RC	32	66	69	52	55	45	79	39	65	41
TAGTTAATCCATGGCA	alt_3673_RC	52	104	56	64	97	63	104	83	109	58
TTGTACATATTCTCAC	alt_3673_RC	11	19	12	11	26	13	32	7	23	11
CGACCCTTACTAGCTT	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
CCCCTTACTCTTCGTC	alt_3673_RC	29	68	43	37	74	33	80	39	73	43
CACACAAATTCCGGTC	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
GAGGGGCCCGTGCCAG	alt_3673_RC	13	23	13	7	9	15	13	20	19	10
AGTCCCGTATTGTTTC	alt_3673_RC	22	20	16	6	20	18	28	18	29	15
TTGCAGATAATCTTCA	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
TTCTTCTAACCTACAC	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
GTTTGATTGATGTGGT	alt_3673_RC	27	39	29	21	30	28	36	19	27	26
GTAGATTTTTTGCTTT	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
GTTCTTCCCGCAGGGT	alt_3673_RC	50	147	56	66	121	37	118	54	125	39
CCCTTTCTGGTTTTTG	alt_3673_RC	8	12	20	12	14	16	13	15	20	13
TGTGCCGCCTCCCAGT	alt_3673_RC	17	32	29	21	33	26	41	20	46	19
TTAGCTTTTCAATCCT	alt_3673_RC	12	31	14	13	14	16	22	9	27	8
CTAGACAGTACGCAAT	alt_3673_RC	0	0	0	0	0	0	0	0	0	0
TAGGAGTATGGAATAC	alt_3673_RC	11	13	15	14	19	7	12	9	23	17
CACAAGAGACATATTA	alt_3673_RC	3	3	2	1	2	1	1	0	4	0
CTTCCGTTTTTTCTCG	ref_3968_upstream	168	163	198	175	148	148	161	145	207	145
GCTCCTATATGACTTT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
AGATTCGTCCCGATGC	ref_3968_upstream	142	184	200	182	206	164	213	166	230	154
TGTACTTTTTACATTT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTAGGCTGTTTT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TTAACTGATAATCATC	ref_3968_upstream	41	61	56	34	55	41	59	31	57	35
CCCAAGAATTACGCGA	ref_3968_upstream	14	21	17	18	22	11	16	19	23	14
CATATAGAGGGTACAA	ref_3968_upstream	5	3	4	6	9	3	2	2	5	2
TCTCTGGTTTTTGTGA	ref_3968_upstream	11	12	15	12	8	4	19	10	18	11
GCAGGATTGACCCTAG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TTCAATTTGGTTATCT	ref_3968_upstream	2	4	4	2	4	3	4	4	3	11
GGGTAGGCTTCACACT	ref_3968_upstream	20	21	18	19	18	10	18	8	15	12
GCGGGACCATTTGTTG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
CCAATACCCGGAGCAT	ref_3968_upstream	13	42	13	24	37	10	52	18	47	9
TTGGCACATCATTGGT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
CGGAGCTACTTGGTTC	ref_3968_upstream	84	134	108	82	124	90	143	90	135	95
GCCAGGCTTTTCATTC	ref_3968_upstream	10	35	27	15	22	19	47	10	54	20
TGACCCGAATGCTCCA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTTAGTTATTACT	ref_3968_upstream	29	44	41	31	47	35	57	23	42	31
CGAAGATCTGCTCCTA	ref_3968_upstream	33	39	55	35	42	47	32	38	59	35
TAGGTTGCATATGGCT	ref_3968_upstream	38	53	48	41	48	53	55	31	42	32
GTTCCTATCCGAATCA	ref_3968_upstream	10	5	9	7	11	7	5	3	11	5
CTCTCTCCTAGCAGAG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTCCACTAAGTTT	ref_3968_upstream	6	15	7	3	9	3	16	3	17	4
TAATGTCATACTCTAT	ref_3968_upstream	3	8	5	4	7	1	4	1	0	3
CATTGTTACATGACTC	ref_3968_upstream	95	112	98	78	108	84	114	72	101	85
GTGAATATTTGTGTTC	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
ATATGACGGCTCGACG	ref_3968_upstream	44	26	60	50	50	62	45	29	43	26
TATATTGGCAATCTTT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
AGTACTCAATTGCAGT	ref_3968_upstream	8	21	12	12	9	5	11	7	11	5
CATCCTCACGTGTATG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TGATTTAATCTTACAT	ref_3968_upstream	6	2	9	2	0	0	6	3	4	9
CACCTCATCTACTAGG	ref_3968_upstream	4	7	5	7	8	6	10	3	6	6
CGGACCAGGCTTAAAC	ref_3968_upstream	13	16	12	8	25	13	25	21	18	17
GATGGCACAGTCACCC	ref_3968_upstream	16	19	15	20	19	15	25	8	23	15
ACGTTCACGCCCCCCG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TGATCGATCCTTAGAT	ref_3968_upstream	11	15	31	16	24	13	23	15	25	15
AACTTTGACTCCACTC	ref_3968_upstream	50	83	66	62	92	63	94	62	104	49
CTGCTGTGCTTGTTCA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
CAGGAGTCAGTGCGTT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
GTCTAAAGGTAGCCAA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGTGCCTAAGAAT	ref_3968_upstream	36	56	65	37	50	43	50	40	71	47
GTGTGCATGGTAAGGG	ref_3968_upstream	50	72	66	48	77	49	83	35	89	48
CCAAGTTCTAAGGTAG	ref_3968_upstream	9	32	24	20	24	19	17	13	17	16
GATGCGGTACGCGGTG	ref_3968_upstream	56	90	76	62	81	79	109	44	95	53
TCGGCCTCAGCCACTT	ref_3968_upstream	192	218	218	214	241	186	269	178	275	149
AAAGACGTTTGCGGCT	ref_3968_upstream	11	17	15	16	16	13	21	12	18	16
ACAACTCTTTTTATCA	ref_3968_upstream	8	9	15	6	13	20	14	10	19	13
GTATAATTGGGCGGAC	ref_3968_upstream	24	35	51	35	40	32	25	24	44	31
ATCCGTGTTCCCTAAA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
AGTAACCCCGACAGTG	ref_3968_upstream	5	3	4	4	9	6	1	2	3	2
AATATCTCAGTTTTTT	ref_3968_upstream	21	18	10	7	18	8	11	13	14	10
AATGGTCAGGGGTACC	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TCGATTTTCCATATAT	ref_3968_upstream	87	89	84	70	95	63	110	73	95	78
TATTTTAAGATCCTAG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
CTCAACACATATGTTC	ref_3968_upstream	39	37	34	34	44	28	52	36	46	28
CCGCGAGCGCAATGCG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
AGCATCGTCATCACTG	ref_3968_upstream	5	16	10	10	19	10	17	5	15	8
TCAAGAGCAGTTCTAC	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TGATATAGCCCGAGCC	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTTCAGAGGTGAA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
CCTACCATGCTCATCT	ref_3968_upstream	122	119	121	125	120	95	117	102	136	82
TTGTGTATGTATCTCT	ref_3968_upstream	1	1	11	4	0	2	3	4	5	5
CGCGATCGCATTGATT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
ACGCCGACGTTAAGCC	ref_3968_upstream	21	32	37	39	19	29	43	13	44	24
TTGATATCGTTGTATG	ref_3968_upstream	25	18	24	24	17	14	27	26	29	20
TGATCATTGAACACAG	ref_3968_upstream	20	15	12	10	11	10	12	8	14	10
TCGGAGGTTCGTTCTA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
GCGGAGAAAAGGATAC	ref_3968_upstream	20	24	25	22	26	29	27	19	30	16
AGTAATTAAGTTTTAT	ref_3968_upstream	7	7	10	5	7	2	4	7	5	9
AAGCCGCTATCCCCGG	ref_3968_upstream	71	107	106	97	100	69	98	76	127	54
TGGCGTACGTCATATG	ref_3968_upstream	40	50	54	50	69	32	47	45	37	29
GACAGTTAGCGTTTCA	ref_3968_upstream	20	35	28	24	31	24	40	17	38	27
TACTTTCGGCATTAGT	ref_3968_upstream	12	14	6	8	16	5	13	9	7	8
GCAAGTGTTCTAGATG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTGCTCAGTTGA	ref_3968_upstream	43	45	41	43	52	39	55	44	69	46
CTCTTTGCGCCAATCT	ref_3968_upstream	38	61	33	48	69	40	54	34	59	27
CGCCACCCCCGACATT	ref_3968_upstream	18	20	15	17	22	11	24	20	20	9
GTAAAACGCTAGAAGT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
GCCACGGTACGCTTTT	ref_3968_upstream	5	7	6	5	19	6	15	10	11	6
TTCCAATAAAAACTAC	ref_3968_upstream	24	30	32	34	26	26	37	24	41	38
CGTCGTGAGTCTAGAA	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGGCTCAGCTCCG	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
CAGCAGCGAGTAATGC	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
GATATTCATGTTTTCC	ref_3968_upstream	23	35	31	20	32	26	28	35	53	28
CTTGGCCGTTCTTTAC	ref_3968_upstream	25	55	36	13	54	22	50	23	59	12
TTGACTTTGATCATTT	ref_3968_upstream	0	0	0	0	0	0	0	0	0	0
TATTGAAGGGAATATG	ref_3968_upstream	15	13	8	11	17	13	12	10	27	7
GTTACTATAGATCATT	ref_5881_new	35	60	51	39	61	34	58	54	64	33
GCAGCATTCCGCATTT	ref_5881_new	49	86	87	72	94	50	84	72	88	84
ATATTCCCCAATCTCA	ref_5881_new	58	100	56	62	82	49	112	48	100	48
TTGATGATAAAGTAAG	ref_5881_new	39	59	33	36	51	36	66	41	46	32
TTGTGGTGAAGTACAA	ref_5881_new	0	0	0	0	0	0	0	0	0	0
TCACACACGGAACCTT	ref_5881_new	6	4	8	6	8	7	5	5	10	10
GTAATCTAAGCTTCTT	ref_5881_new	10	11	10	9	25	17	25	14	23	21
CGGTTGACTGCAATCT	ref_5881_new	9	9	9	6	9	7	15	11	7	12
CGCTGGAAGTTTTTAG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
AAGGTCATAAACGGGG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CGTATTGCTGTGAGTG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CGTAGCCTTTCCGGCT	ref_5881_new	28	40	38	22	36	28	40	27	52	21
AGGGTTTCTTTATTGA	ref_5881_new	62	80	67	58	85	45	82	52	61	54
GCTTGATCTGCTGGCA	ref_5881_new	27	44	35	29	32	33	39	25	42	26
AGTTTAGTCGTGCTCG	ref_5881_new	22	12	23	20	26	21	35	28	41	22
AATCGCGCTTCATTTC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
TTGGAACGCACAGGCA	ref_5881_new	2	0	1	0	4	0	3	5	3	1
TGGCCAATGGTACGCG	ref_5881_new	6	9	7	7	11	6	12	6	13	6
AAACCTTTGACGATCT	ref_5881_new	33	38	35	23	28	24	24	24	15	32
TTCAGTCGATCCTCCC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GTAGCGGTCCTGTTTC	ref_5881_new	19	24	19	17	23	13	23	25	24	17
TTCTTCTACGCCCTTT	ref_5881_new	33	41	47	26	40	30	41	34	48	23
TTGGTCGCAGGCTAGT	ref_5881_new	39	64	35	42	58	39	53	42	40	37
CTTGCTTAATGTCATT	ref_5881_new	25	27	15	11	18	18	26	20	20	28
ACTGTAAGAACGCAGC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CGGGCGCATACTCATA	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CTGACTTGTCCTTGGA	ref_5881_new	28	49	37	27	26	36	36	19	33	22
CGTCTTTACTCATGAC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GACGATCCCGGGTTTA	ref_5881_new	0	0	0	1	0	0	2	1	1	0
CAAGGCTATCTCACTG	ref_5881_new	36	56	43	50	48	20	60	35	43	27
AGTGAGCTCCAATTCC	ref_5881_new	2	3	3	0	2	0	1	0	0	0
TGGGGGCTGGAATGGA	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CTGCGTGTCCCCTTTC	ref_5881_new	17	22	17	6	12	5	18	19	17	11
TGTAATGCAAGTTGCC	ref_5881_new	76	96	115	95	131	114	127	89	130	100
GCTCAGTAATTAATTT	ref_5881_new	12	38	22	18	24	21	31	35	31	27
GTAGGCATAGCTGTAG	ref_5881_new	5	6	5	4	5	3	4	1	3	4
TAAGGTCTCGGCTGAG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CTCCCCGAGTACCTCT	ref_5881_new	5	18	3	7	28	8	14	4	19	0
TTCGCTCGATTTATAA	ref_5881_new	25	16	15	17	26	18	13	20	20	21
TCTCTCTGTGCAGCGC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
AGTTTCACGAGGCTCG	ref_5881_new	60	63	71	57	68	55	50	56	70	62
AAGGGCGTTATGCCCG	ref_5881_new	106	114	107	114	135	101	127	99	151	79
AGTGAGATATTCTATT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
TTGCGGCACCACTTAT	ref_5881_new	4	8	10	3	9	4	10	4	10	18
GTCTGGCAATTATTCA	ref_5881_new	3	0	1	1	0	0	4	1	1	0
AGACTACGCATGCCTC	ref_5881_new	10	3	4	1	4	5	7	4	6	1
ACATCCTGCATTGGCG	ref_5881_new	11	23	21	23	19	17	29	22	21	22
GGGCAATGACCCCGGG	ref_5881_new	29	24	24	21	38	27	34	15	33	22
CCCGTTTCATTCTATC	ref_5881_new	10	34	16	20	35	14	37	14	30	18
GATCCCTGAGACAGGT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
TTTCGGTCTCTTTATT	ref_5881_new	34	43	33	42	63	31	62	28	44	37
GCGATGTGTGTATACT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CAAGCCAGATAAAAGA	ref_5881_new	28	74	24	31	86	26	77	20	99	30
TTTCTCTGATAGTTAA	ref_5881_new	31	41	43	31	31	35	50	35	55	27
AGTTAATTCTATTGTC	ref_5881_new	25	39	32	24	31	18	38	22	37	18
GGTGCGTATACATCCG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GGCCCCGACCCACTAA	ref_5881_new	17	32	29	15	28	27	36	30	30	15
ACACGGACCGGTCTGT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
ACGTTATTTTGGGTCC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CTCTTAGTCAAATATG	ref_5881_new	15	29	22	15	29	35	41	18	33	13
TTTGTGTCCTACGAGC	ref_5881_new	24	32	20	16	32	21	46	22	31	17
CCTTGATCGTTAGCTC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
ACCTCGCAGTGTGTGT	ref_5881_new	9	14	9	8	14	4	17	4	15	9
CTGTGGCTTAACAGGT	ref_5881_new	65	65	99	63	83	51	84	65	97	62
TTTTGTAGCCAGAAAT	ref_5881_new	3	2	5	3	1	0	2	3	5	2
TTGAGGCTAGCTCTCT	ref_5881_new	0	10	3	2	4	10	7	5	6	1
TGGAGGATAGTTATTC	ref_5881_new	42	58	43	42	61	56	56	51	60	56
ATTTTGACCTTCCTGT	ref_5881_new	4	9	13	5	6	4	16	6	13	4
AGAGTGCACTTAATCA	ref_5881_new	6	5	13	14	13	11	19	14	11	9
GGCTATTACTTAAACT	ref_5881_new	13	18	22	14	19	13	34	15	24	12
TCCCGTGTATATATAT	ref_5881_new	45	50	53	44	56	48	59	40	52	43
ATCCTATTCATTGCTT	ref_5881_new	21	21	15	17	21	25	20	17	21	11
AAAATTGCTCCGGTAG	ref_5881_new	41	36	50	45	47	39	34	33	42	25
TCCCCAATGTCCGCCG	ref_5881_new	29	28	20	17	28	21	25	22	29	19
AACATGCACAGTGCAA	ref_5881_new	77	104	121	72	120	64	106	75	107	81
ACCATGGGCTCTCTTT	ref_5881_new	109	172	134	132	180	135	176	113	146	103
GTGCACGAGTCTCTAC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
AATAGGCCATTACACT	ref_5881_new	13	9	7	5	12	8	17	6	5	9
ACCAGGTGCATCGTCT	ref_5881_new	11	15	12	17	14	7	16	13	14	11
GTAGGCTCTTCTTTCT	ref_5881_new	34	25	37	31	41	36	42	23	31	19
TAATATGGGCCATTCT	ref_5881_new	9	22	11	14	10	14	11	14	10	8
TCCACCTAAACGTCAG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CAAGCATCTTACTCCA	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GGGGGGATCCTGATAC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GTTTCCTGGGGTTAAC	ref_5881_new	22	29	23	16	21	12	36	18	30	17
TACGTATGATCTGATG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CTAATCTACCTAGGGT	ref_5881_new	23	41	34	30	59	30	57	24	44	26
GGATCTTGTTTAGTGG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CATAGATGATGCCGTG	ref_5881_new	25	50	26	24	30	23	28	13	31	20
CGCTTATCTGCCCCGT	ref_5881_new	17	42	27	25	59	28	48	22	38	13
GGTTCCATGTCCGTGG	ref_5881_new	23	33	33	25	39	24	34	23	34	25
TGGTAGTTTCCCATCC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
ATATAGCTCTATTAGT	ref_5881_new	19	25	19	15	33	18	20	27	18	15
CGCTGTAATAGCTGTC	ref_5881_new	10	4	8	4	13	5	8	8	11	9
AAAAGAATTAATTTGA	ref_5881_new	31	41	23	20	35	27	40	26	25	15
TTTATGCATTGTTGGT	ref_5881_new	20	28	32	11	24	14	28	15	26	19
AGTTTTATCGTCTACG	ref_5881_new	32	37	32	30	31	42	39	30	51	31
TCTGTCTGACGGTTTT	ref_5881_new	15	19	21	17	21	7	40	6	20	6
TTTCAGACGCTGCACT	ref_5881_new	16	15	12	13	21	6	22	11	25	13
TCGTGCGATAGTCCAT	ref_5881_new	42	55	45	41	47	25	47	33	42	41
ATCGCTCTATAACTCC	ref_5881_new	29	26	36	20	47	20	31	17	49	20
GAAGTCTCACTCGGAA	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GTGATTATTCGTGATT	ref_5881_new	22	46	26	17	21	23	43	20	47	19
CGAGCCGCTTTCTTAG	ref_5881_new	26	36	31	27	46	24	52	22	41	17
TCCAGTTCGATTGTGT	ref_5881_new	36	84	44	44	78	29	84	30	106	27
TATGAACTTTAGGTTG	ref_5881_new	0	8	7	6	4	4	3	5	9	7
GTTTTTATCTTTTGGT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GATGCTGGCGTCTCTC	ref_5881_new	37	45	38	35	62	34	43	40	53	41
ACGACAGGCTCAGATG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
GCTCTTATGCTTTTAG	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CCGTAGGTAGTAGCGA	ref_5881_new	2	2	3	5	4	0	5	2	4	1
CATCGGCGGCTGACGA	ref_5881_new	92	93	130	101	110	94	100	80	92	75
ATCTATGTTAATAATT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
TATAGACTCATTTCTT	ref_5881_new	109	132	147	127	136	99	128	135	160	114
CGCTCCTGATTGCATC	ref_5881_new	24	33	26	24	27	26	38	20	42	23
CATGGTGCCCGTTTCA	ref_5881_new	8	15	16	14	21	8	12	13	16	15
ACTACCCTGCGTGCAC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
AATTATCTAGATGCTA	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CCCTCGGTCCCTCACG	ref_5881_new	28	50	46	26	55	29	42	30	51	42
CCTTAGGCCAGTGCCT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
ATCGGGTCCTATTGGA	ref_5881_new	18	32	25	12	33	10	34	27	36	14
TCTCTACATTTCATCC	ref_5881_new	125	159	124	114	167	101	175	114	163	106
CGGACGGCCTTAACGC	ref_5881_new	30	50	31	29	38	18	48	28	36	31
CAGCGTCGTGTTAGCC	ref_5881_new	45	20	53	54	35	46	39	49	26	36
AGCCGGTCTCGATTTT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
CCCTCCCGGGGCCTGA	ref_5881_new	33	58	28	34	60	22	53	13	62	27
GTTTTCTTCTCATCTT	ref_5881_new	0	0	0	0	0	0	0	0	0	0
ATGGGTGTAGGTTACG	ref_5881_new	7	6	7	7	6	7	19	7	6	4
GGCCCAGGCCGCCGCC	ref_5881_new	0	0	0	0	0	0	0	0	0	0
TAGATTAACATAGGAA	ref_5881_new	0	0	0	0	0	0	0	0	0	0
ATTTTGCTTTACTTTG	ref_5881_new	17	29	31	30	43	27	28	33	41	26
GGAACTTTGTTGATGT	ref_5881_new	26	38	30	16	51	35	43	34	41	22
CGTGCAATAGATCCAC	ref_5881_new	4	5	4	6	12	0	8	2	2	5
TGGATGCAAGCCGCAG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GTTAGTTTTTCTCAAT	ref_1185_missing	34	69	41	22	59	32	64	28	61	24
GCGCATCGGGTTATAA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
AGGGTATCATCCCTGG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TCCTTCTGTTTTGCAC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GGTTTCCTGGTACCAT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
CAGAATCCGCACGTGG	ref_1185_missing	20	47	34	21	31	21	20	15	42	17
CTTAATTCTGTCAATC	ref_1185_missing	9	45	23	13	43	29	45	13	62	12
CCATCCGCGATGAGTG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
ACCGGTGATCGAGCCG	ref_1185_missing	13	32	7	10	19	10	19	17	16	16
TTGATTATTGTAATTA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
ATTGCATACGCCCGTT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
CCATCTTGTGATTCAA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TTGATAGGACTCCCAT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GACCATTGTGCCTACC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TAGGGTACCCGTCAAG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GTGCTACACAATGGCT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TCAGGACGTGTGCGAG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TACACTTGGTTCGGTC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
CTGGCGCATCCAAAAC	ref_1185_missing	6	19	11	7	13	8	14	3	17	4
TCTCGTCAACGGCATT	ref_1185_missing	9	27	13	15	22	10	26	12	17	21
CCTAGTCTCGATTTTC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
CGCGTTGGAACCGTTC	ref_1185_missing	4	8	3	1	6	4	19	4	18	3
TACCTTCCTTGGAGCA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TTTTATTTTTGGCCAA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GATCTGATTGTCTTAC	ref_1185_missing	2	3	3	0	3	0	3	1	3	5
TTATTTATACAACGTT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GTAATCCCTAAAGTCT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GTCGCGATATAGGTCG	ref_1185_missing	5	5	6	3	11	1	7	3	12	1
TTGTTCGTACGTGAAC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TAGTACTTTTCGTTTG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
ACTTTTCGAACCTTTC	ref_1185_missing	12	11	13	11	30	8	15	9	16	7
TAGATCACATCCTCGG	ref_1185_missing	15	26	16	9	28	6	16	16	26	16
GGCGCGTTAGAACAGA	ref_1185_missing	4	5	8	4	16	7	6	5	13	0
CGGTAAAGGTATGCTC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
AATTACAGGTATCCTG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GTTCTATGCGCTCCTT	ref_1185_missing	3	3	1	0	2	1	2	2	3	2
TGTCAGATCATTGCTA	ref_1185_missing	19	29	13	11	32	9	26	12	33	14
TTAGGTGGTGCGGCTG	ref_1185_missing	16	15	12	5	13	6	16	5	15	9
TTCGGCCCATTTGTTA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GAGATTACCGAACACT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
ATACTTCTCCGGCTAG	ref_1185_missing	7	7	10	6	17	6	10	4	8	3
TCCTTGAAGGATTTTA	ref_1185_missing	2	2	3	1	1	1	2	2	0	1
GCATATGAGCCCCGGT	ref_1185_missing	2	6	3	1	3	3	18	2	12	4
GTCTCAATTCACACCA	ref_1185_missing	7	12	7	4	11	5	9	10	16	2
CCTTTCTCGCCATGTC	ref_1185_missing	6	21	11	9	16	14	31	2	38	8
AACTATGCAAGGATTG	ref_1185_missing	25	23	24	10	41	13	33	18	38	21
ACTCACATCAGCTTGG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
AGCGCCCGTCACAGTC	ref_1185_missing	2	5	1	2	0	3	5	4	2	1
AATGCCTTTGTGTATA	ref_1185_missing	10	14	15	16	27	15	20	11	18	11
CGGCTCCGTGACACTC	ref_1185_missing	6	6	3	5	6	2	14	2	5	2
GGCCTACTAGTTTTGC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
AGCGGTTTAAATTATC	ref_1185_missing	3	6	3	3	6	5	12	4	6	0
ACATATAAGCCGCGAT	ref_1185_missing	1	4	4	4	2	2	7	2	6	3
GAGGTTCTAATTTTCA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GAGAGAGGGATATCCT	ref_1185_missing	18	12	17	7	20	13	26	13	14	9
ACGTGTAGTTACCATT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TGCTTAGGTAACTCCC	ref_1185_missing	11	8	11	9	19	8	37	5	21	16
TTCTTTCGAGAATGCC	ref_1185_missing	13	18	16	9	24	10	26	7	23	11
CAAGCGACGGCAGTGG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
ATGCGTCAAGTTATCG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GCCTAAACGCTTCCTC	ref_1185_missing	1	3	2	0	3	3	3	0	1	5
TTTTTTATTTCCTTTC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
CACCAGCTAATGTATG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
CACGTGGACGCTACAA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
AGCGGATAGGAGGTTT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TAGTTGGGATCCGTCT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GCCACTAATCAGGACC	ref_1185_missing	9	18	12	3	19	13	11	10	19	15
TGGGGGGACTTTTTTA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
AGGTAGTAGTTCCCGG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
AATCTGATCTCGCGTG	ref_1185_missing	4	5	1	3	4	3	3	0	3	2
GGCCGGTTCGTTCGGA	ref_1185_missing	9	30	21	17	41	15	33	18	39	19
GTTTAGCAGTGATTTG	ref_1185_missing	5	10	5	5	11	6	10	1	12	5
AGTCATAATTCCTAGG	ref_1185_missing	15	12	5	8	15	12	21	5	15	9
GCTATGGGTTGACTAA	ref_1185_missing	0	1	0	1	3	3	2	0	1	1
GTGTGAACAGCGAGTT	ref_1185_missing	5	4	3	3	5	4	6	4	4	1
CGAACCTTTATAAGAG	ref_1185_missing	5	7	7	4	7	2	4	1	8	1
TGATTTCATGAGTTCT	ref_1185_missing	0	4	1	5	0	1	1	0	4	0
TGGGTCCGAGTTCTTT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TGCTAGTTTGAGTATG	ref_1185_missing	6	8	2	8	5	5	8	1	4	6
TTGTGTAATTCCACGC	ref_1185_missing	8	19	6	11	8	4	13	7	8	8
ATTTTCGGGGGTCGGT	ref_1185_missing	20	14	14	8	26	9	20	11	26	14
AGTCTCGATACTTCAC	ref_1185_missing	6	10	6	2	7	8	9	3	10	4
GTTCACAAGCGGACCG	ref_1185_missing	0	0	0	0	0	0	1	0	1	1
CCTTCGACATTGATAC	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GACACCGGTGTCTTGT	ref_1185_missing	1	2	0	0	1	1	1	0	0	0
GTATTTAGGATTTTGG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GATCGCAAGTAGTTTG	ref_1185_missing	1	5	6	4	4	4	6	4	9	3
TACGTTTTCTTTTTAC	ref_1185_missing	3	5	9	4	3	4	11	6	6	3
CCATAGGCTGTCGTGG	ref_1185_missing	1	14	6	6	17	5	25	6	8	6
ATCTGTGGTCAAACTA	ref_1185_missing	11	31	13	12	13	9	13	16	19	7
ACTACTTCTCTAAACC	ref_1185_missing	0	5	1	0	2	0	6	1	2	2
ATACGGTTTGGGTTTA	ref_1185_missing	1	0	2	1	4	2	3	0	1	0
CTTCGAAAGAGCTTTT	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
TGGGCCACAACTAGCA	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
GGCTCCTCAATACGTG	ref_1185_missing	0	0	0	0	0	0	0	0	0	0
CAGTTTCTCTCTTTTT	ref_1185_missing	6	8	8	8	9	11	12	4	4	6
TATCGTGCCATTTAGC	alt_244_fdr	843	316	1003	941	370	839	361	760	419	738
GTGGATGATTTTAATG	alt_244_fdr	57	28	76	61	36	40	26	82	25	54
AACGTAATGTTACGTG	alt_244_fdr	40	24	48	56	14	46	25	35	15	44
GGTGTAAAGCGCAGTA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGCTGAAATGTGG	alt_244_fdr	141	64	146	150	60	91	65	106	71	109
GTATATTGGATGTGAT	alt_244_fdr	172	82	212	176	73	151	72	127	75	123
CCTTTTCTGGCATATC	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGATTGGTGCATT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTAAATCGCCATA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
ATAGATCTGATTAGAT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGACGGGGCACGCGCG	alt_244_fdr	1	1	3	1	0	2	2	4	2	5
GATATCTTTATTGACG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCGTTTCGGTAGT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCATGATGTGACT	alt_244_fdr	124	65	156	148	40	128	59	145	69	98
TGCCCGGCTGCTTCCG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGCGAGCCCTTAT	alt_244_fdr	11	2	11	23	7	14	4	6	8	12
TTTGACAATAACTATT	alt_244_fdr	113	41	137	102	44	87	46	105	50	61
TTGGGGTGAGTTGTTA	alt_244_fdr	47	16	41	35	21	27	15	36	17	35
TTTGCATCCTCTAAGG	alt_244_fdr	157	73	189	177	58	141	77	175	87	145
TTTAGTCAGAGCCACG	alt_244_fdr	91	37	98	85	48	68	33	93	39	69
TTGGATTCGCTTCCTG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CTTCATTGAGTTACCA	alt_244_fdr	9	10	22	18	8	11	12	12	15	10
GCCACAGTGTATGCAC	alt_244_fdr	22	9	28	8	11	23	17	9	4	11
TTTATCCTGTCCGTGC	alt_244_fdr	1	1	13	7	1	2	3	5	2	6
GGTTATCTTACTAGAA	alt_244_fdr	134	59	172	156	65	124	58	142	61	93
CTTGAGGTACTCAACA	alt_244_fdr	65	44	70	88	36	79	47	72	46	52
GACCTGCGGTCTTACA	alt_244_fdr	81	35	97	75	25	75	34	80	42	47
TTTTTTTATCTTTCCA	alt_244_fdr	276	80	337	284	87	265	81	296	77	257
ATTCCTTTGTCAACGT	alt_244_fdr	45	21	61	64	24	36	17	42	16	38
TGGCGATGATATCCGG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCGTTGTAAGGGC	alt_244_fdr	5	3	9	8	3	4	1	4	6	6
GTTGACCTTGACGTCG	alt_244_fdr	139	44	146	117	76	131	61	129	84	126
CGTTTACCCTCTCTCG	alt_244_fdr	100	70	152	113	61	83	59	91	49	97
TATTTACGCGAGGTAA	alt_244_fdr	81	30	121	99	34	103	35	79	49	81
GTGCCTTTCTTACAAC	alt_244_fdr	43	23	69	49	31	61	25	57	24	63
TATGAACAATTGAATA	alt_244_fdr	93	26	76	119	46	91	39	79	45	84
TCGTGTACTATTATCT	alt_244_fdr	84	39	114	92	44	99	37	93	49	92
CTCTGTAAGTTGCCTT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TCCAAGTTCTTCCAGT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAGCGCTTCCTCT	alt_244_fdr	322	99	344	352	119	252	112	271	91	296
CTGTGTTTTCCGGTCT	alt_244_fdr	22	19	39	31	16	35	15	29	10	23
TTCAGTAACTACCTGT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCCGGCAGTACGA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AAACCGTAACATCTGC	alt_244_fdr	125	32	127	101	63	113	43	104	49	95
GATCCGTCTACTGATC	alt_244_fdr	10	6	9	8	6	10	7	8	8	17
TAGTCGAGATTCTCTA	alt_244_fdr	18	6	14	17	5	19	9	21	7	11
GATCCTAATCCTTCTT	alt_244_fdr	153	38	181	151	57	144	40	141	51	128
AATTCAATTACCGTCG	alt_244_fdr	7	2	12	14	4	13	2	9	4	9
GGTGAGGCTATCTTGG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
ATACAATACACGTGGA	alt_244_fdr	48	18	44	40	20	39	23	39	16	30
TCTCTGGCGCTTGCCC	alt_244_fdr	24	24	27	28	20	22	23	27	13	17
GCTCTTTTCCTTTGTG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGCTAACTTTTGGCGT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCGGTTGGGCGT	alt_244_fdr	43	15	39	47	13	33	23	34	30	32
AGGGCTTTAGTTGGTT	alt_244_fdr	44	21	48	47	15	41	30	31	20	33
CCCACTGTGTGGCCGT	alt_244_fdr	13	15	13	13	14	5	24	20	18	11
GGCATAAACTCTCTTT	alt_244_fdr	148	57	162	142	65	164	71	159	62	121
GATTAGCGCACTTTAA	alt_244_fdr	60	33	77	85	27	71	27	80	21	44
CCCGGGTTTTGCGAAT	alt_244_fdr	59	48	53	59	49	44	59	43	50	33
GTAAGAATCACCCCGT	alt_244_fdr	4	2	6	6	1	5	2	3	0	7
CTATCATCGCATTCAC	alt_244_fdr	31	11	52	29	13	28	18	28	20	37
GCAAACTCTGGTATCT	alt_244_fdr	73	37	131	82	36	64	49	92	33	75
CGTCCAAGGGTTTGTT	alt_244_fdr	1	0	2	8	0	2	1	8	0	7
TTTTCGCAGATAATTG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GCTACAATGTCATATC	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCGACCCCGGGC	alt_244_fdr	19	15	35	27	17	19	14	21	28	25
TATGCAATGCCTAATT	alt_244_fdr	417	158	516	451	171	388	149	369	174	356
AAATATATCTTCTAAT	alt_244_fdr	89	48	134	114	46	103	44	87	43	96
AACAAGCACGGGTTCC	alt_244_fdr	64	23	92	86	32	83	32	84	22	77
GTAGTTACCTGTGTTC	alt_244_fdr	275	146	300	289	147	244	156	243	171	226
TGTAATATCCGACTCA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCTATTGGTCAAG	alt_244_fdr	380	190	533	462	190	386	170	423	185	377
TACAAACCCGCTCTCC	alt_244_fdr	59	18	65	66	21	54	27	44	34	67
CTAGTTCCACTTGCTG	alt_244_fdr	13	6	21	6	2	11	11	13	4	7
CATTAAAGACTGTACT	alt_244_fdr	49	16	66	48	20	55	22	46	27	30
CTCTCTAATGCCCGTG	alt_244_fdr	279	145	353	331	156	268	144	313	154	254
CGCGTGGCAGGCCACT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGAGACACTCTGC	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CTATATGAATAGGATA	alt_244_fdr	151	55	192	117	63	125	55	135	78	108
GTTGCATTAACTTTTA	alt_244_fdr	382	147	433	408	143	346	165	350	167	314
CACAACAATCCTGAAC	alt_244_fdr	150	45	148	134	70	116	70	133	59	107
CCTTTATACATATCGA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCGGACTTTGGAT	alt_244_fdr	111	49	120	111	49	95	57	87	43	78
AAGCCAACGTATACAG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AAAAAATCTTGCCATG	alt_244_fdr	401	183	486	414	173	405	178	411	190	332
CTCGCCGTACTGTCTC	alt_244_fdr	231	112	323	261	96	237	123	239	140	198
GGGGGATCATAGCCGT	alt_244_fdr	80	17	87	59	27	80	26	80	37	61
GACTGGGTCTGAAGCA	alt_244_fdr	57	30	91	90	30	63	31	86	40	63
TCCGTTTTAGTACCTT	alt_244_fdr	21	17	29	22	9	30	11	28	11	18
ATTATGCACTCATGCA	alt_244_fdr	108	49	105	126	47	95	42	101	37	72
TCTATGTGGCTTAGCC	alt_244_fdr	6	6	10	4	6	3	5	5	4	6
GCCTCAATCAATCATC	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCTCCTTTTTTCT	alt_244_fdr	399	142	466	427	162	363	173	374	165	294
CTTGGAGGATTGCGGA	alt_244_fdr	162	50	141	163	66	161	66	128	69	128
TAGTGTTGATCTAAAA	alt_244_fdr	32	16	39	33	16	28	17	40	10	41
CGCGCTATCTGCCGGT	alt_244_fdr	4	0	3	3	1	3	0	0	0	2
ACGCTCGCGCAAGGTG	alt_244_fdr	91	26	72	98	28	68	39	71	36	53
CTGGTCCGCGGATACT	alt_244_fdr	192	64	235	184	88	181	77	188	82	181
TGTGTGATAGATATTT	alt_244_fdr	394	181	480	383	177	331	205	412	194	351
CCCATGCCTTGAGGCC	alt_244_fdr	282	116	347	306	122	261	123	271	134	213
TCGCCTGACTTCACTC	alt_244_fdr	163	85	172	157	75	147	78	125	69	131
GAAAAGATCTCAAACG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGTATGTTCTATGGCT	alt_244_fdr	71	24	66	57	21	77	29	94	16	42
AAGTGTACACGGCTCG	alt_244_fdr	272	103	307	267	94	238	107	262	110	211
CTATGTTTCATAGATG	alt_244_fdr	58	29	92	64	32	60	30	61	17	72
GGTCGAATTTTCCCAG	alt_244_fdr	82	53	66	75	53	65	55	48	51	65
TTTCCTGGGTTTGATC	alt_244_fdr	54	15	80	82	27	58	28	45	32	65
GCATGTCATTAATTTC	alt_244_fdr	16	10	31	27	11	22	9	18	5	18
CGGCCTTAGCTCCATG	alt_244_fdr	2	7	0	3	12	3	15	0	8	7
GCACGAGTTGAAGCTT	alt_244_fdr	11	4	18	15	4	10	8	15	9	14
TGAAGTCGCTTGGACA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GTGCAATAATAACGTA	alt_244_fdr	243	121	344	267	101	259	119	208	130	232
TCGTTTACGTTATGAA	alt_244_fdr	67	26	64	38	23	55	18	48	22	61
CGATCGAGCAATAGGT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GATCGTCCGATGCAAT	alt_244_fdr	45	11	49	36	15	32	12	30	13	33
GGTTACATAAGCAGTT	alt_244_fdr	78	36	97	67	41	68	39	61	33	49
CGGTTTGTCTAGGCAA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CTGTAAAGATATCGAA	alt_244_fdr	205	85	250	237	90	164	77	193	110	164
TAGGTTTTTTTTTGCT	alt_244_fdr	60	26	73	76	25	67	30	62	26	58
GATAGTATACTTCGAC	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CGTACCTTTCTGCGTG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GAAGCAGGCCGGACAG	alt_244_fdr	70	33	111	101	32	71	35	80	35	64
ATTCGGTTCGACTGTC	alt_244_fdr	32	33	28	27	48	31	45	19	30	24
GTCTCATCGCGTGCTC	alt_244_fdr	535	243	746	591	238	564	264	546	270	489
TTTATCATTACGATAT	alt_244_fdr	86	36	122	111	47	85	30	80	48	56
GGTGTATTCAAAATAT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCTAACACTGGGC	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTTTGTGGTAACA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TGGCCGTCTTGTAATG	alt_244_fdr	69	23	85	73	30	65	26	67	23	53
TATGTGGGTCTCAAGA	alt_244_fdr	185	45	197	157	91	142	73	148	64	148
GCCCATCTTCACGTAC	alt_244_fdr	18	8	32	31	6	21	11	21	7	17
CCACTATTGATCCCCA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AACTTCTGTTGTCATG	alt_244_fdr	99	55	105	85	45	81	36	93	50	70
GGTAGTCAACGGCTGA	alt_244_fdr	23	15	32	29	21	19	19	29	16	17
TTTTGAATCACTTTAG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
GCTGGTACGTTCTCGG	alt_244_fdr	103	47	141	125	42	102	40	120	52	93
CGATGATTGAGTTCGC	alt_244_fdr	40	13	55	68	11	38	20	44	15	36
TAACCTATGTGTCATT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCAACTGGGTTTT	alt_244_fdr	57	23	56	56	15	46	30	42	23	49
TGTTGGTCCTGTTGTG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTGTGGCATTGGT	alt_244_fdr	31	11	24	26	5	26	9	13	13	24
TCACTTTACGGTGCCC	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
ATTACAGTAGTCCGTG	alt_244_fdr	64	37	82	83	35	65	37	65	26	65
ATTTGTTTCGTGACAG	alt_244_fdr	70	31	117	127	42	79	36	74	48	63
CACATTTGTAGGGTTA	alt_244_fdr	41	22	40	43	26	46	23	40	25	30
GCTCTTCTCGGAGCGG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AACTATTGTACTCTAA	alt_244_fdr	51	16	53	63	26	33	17	43	21	36
GGGTGATACCGTACAG	alt_244_fdr	217	85	297	228	85	234	118	237	103	185
CTAGTCTCTATTGCAC	alt_244_fdr	93	50	119	102	58	85	50	90	54	62
GATTTGCGCACGATTA	alt_244_fdr	31	18	45	32	9	32	17	35	12	24
AGTTTGCCGAATCCAA	alt_244_fdr	35	19	46	41	15	27	12	36	11	28
ATTGACCGCTCTCATC	alt_244_fdr	117	53	134	133	60	106	37	104	46	103
CCAAGTTGTCTCGTCC	alt_244_fdr	10	63	9	4	53	5	69	8	44	11
CTTGGGATCTCGGAGG	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
CAGAGTGCTGCGAAAA	alt_244_fdr	171	71	222	216	62	163	57	174	73	161
GCAATAGTCCGTGGGA	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
AGAGAGTATTCGGGAC	alt_244_fdr	102	45	118	95	46	88	40	88	46	81
GTCCTGTAACCGCCTC	alt_244_fdr	92	27	104	89	33	79	31	89	39	80
CACGGCCCTAACGCAC	alt_244_fdr	17	10	29	11	6	19	6	16	7	9
GTCTCCTGTAGTAGAA	alt_244_fdr	87	33	108	84	35	73	36	74	40	67
ACTCTAACGCCTGACC	alt_244_fdr	106	34	144	113	50	93	43	80	52	93
GATTTCTCAGTGCCCT	alt_244_fdr	0	0	0	1	1	0	0	0	0	1
AGCGATTTGGTTATCA	alt_244_fdr	99	47	116	103	44	76	41	90	38	80
TTGCTTTTCGTTCACT	alt_244_fdr	57	27	57	64	27	37	24	45	26	49
TCTCATAGGGTTTTGG	alt_244_fdr	53	29	71	63	20	72	32	40	26	57
TTCTTGCTTTGCAGGT	alt_244_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTGCAACCTATAC	alt_244_fdr	49	29	85	60	35	70	23	40	34	48
ATATTGTGCAGATTTT	alt_5837_new	25	43	27	13	23	18	21	13	18	16
GTGATTAAAGTATTTC	alt_5837_new	17	22	23	18	28	20	23	10	29	15
ACGATTCCAGTGTTTG	alt_5837_new	7	8	14	10	10	6	15	10	21	3
ATACCACTCATTGCTC	alt_5837_new	12	17	10	7	25	7	27	12	21	12
TCACCCACAATTTTTC	alt_5837_new	11	29	27	17	25	19	34	12	21	16
TTCTCCAAGTGTTCTA	alt_5837_new	17	24	7	16	48	12	27	13	34	6
CTTTTCGCTAAATCGT	alt_5837_new	17	40	23	13	36	15	27	12	42	18
CATAAAAAGTTGAAAC	alt_5837_new	7	14	13	10	26	6	14	10	18	11
CGCGGATTTACTCGGC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TCGCCCGAGGACACCG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TCGAACATTACAGTTA	alt_5837_new	17	13	13	8	23	18	17	5	20	7
ATTTGCTGCCTGTCCG	alt_5837_new	10	18	21	8	21	15	19	16	26	8
GTGATAGGCACACCTT	alt_5837_new	20	31	33	15	46	20	40	22	40	17
TGTTTTCCTAGCGTAC	alt_5837_new	20	31	20	20	31	29	27	15	27	26
GTTAATGAGACCAAAC	alt_5837_new	34	42	41	19	58	24	58	34	39	22
CGCGCGCCTAATTAGC	alt_5837_new	5	3	1	4	4	1	3	0	7	0
TTTGGCCTGATAGATA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
CCCAGAGCCCCTTGTA	alt_5837_new	33	34	20	24	31	12	36	18	34	22
AATAAGTGATCTCAGT	alt_5837_new	28	47	38	18	49	15	40	24	50	21
AGTTAAGACGCTAACA	alt_5837_new	25	43	31	16	31	21	32	18	50	31
GCGCGATCTAGAACAG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TCAACGACTCTTTTCA	alt_5837_new	20	39	26	22	34	16	33	19	40	20
TCTGCAGTCTCGTGCG	alt_5837_new	25	46	22	25	50	22	48	24	46	23
TTTCGGGACTGGTGTA	alt_5837_new	26	33	26	27	49	24	38	18	39	27
CCCCCAGAAGCTACCC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TGTAATAGACTCCTTC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTGTAAAGTCTGCTCA	alt_5837_new	29	55	43	25	53	31	77	23	69	30
TGTTACTTTTGGGTAG	alt_5837_new	4	9	9	6	7	2	4	7	8	9
GGTTCTGCTATATGGT	alt_5837_new	72	129	76	69	116	61	126	67	97	67
GACTAGCACTATTACG	alt_5837_new	4	5	2	1	8	1	10	3	3	6
CGGTCGGGGATAAAGT	alt_5837_new	75	130	73	53	156	59	110	47	131	70
GGGTCGTGGGTTCAGC	alt_5837_new	86	84	78	70	79	62	138	63	81	56
TGTTTTTGAGACAGTG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
AAGGCTCCATAATGTC	alt_5837_new	25	21	26	14	33	27	36	15	40	22
TCGTCTTGGCCCGGAG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TCCGCTCGCCGTTTCT	alt_5837_new	13	23	14	11	26	21	17	13	27	16
TGCTCGCTGTGGTCAG	alt_5837_new	37	49	46	44	53	38	70	45	82	32
GTAGCCTTGTCCTGAA	alt_5837_new	17	23	24	22	31	14	26	7	28	14
GCTTAGCCGATAAGAA	alt_5837_new	24	80	43	43	68	41	62	48	82	44
CTCGTCCTTGCGGTCC	alt_5837_new	5	13	3	4	14	4	23	3	28	2
TGAGTGCGTATCAAAT	alt_5837_new	153	226	176	161	258	149	313	166	294	161
TCCGTAGCTCATTCCA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
GTGCTTGTGAGTGTGT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TGCGTCCTACGGCCTG	alt_5837_new	6	17	8	12	11	8	8	12	16	10
TCCCGCATACTGTCTG	alt_5837_new	7	30	21	14	31	16	31	15	32	10
GAGTCCATTATATATG	alt_5837_new	21	47	23	19	35	25	48	15	47	17
CTTTCTCTGACTTTCT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TGTTGTCTATCGGGTT	alt_5837_new	9	17	10	5	10	17	15	7	14	6
CGATTGTTTTCGTTTA	alt_5837_new	68	82	78	63	110	63	106	66	97	65
TCCTGCGAGGCCCGAC	alt_5837_new	6	9	4	4	4	2	5	7	11	7
ACACTGCCCCGGGTCT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
CTGTTTCCGACCGTTT	alt_5837_new	4	15	8	1	13	13	11	9	7	3
CGCGGTGCCGGATTTT	alt_5837_new	8	14	5	10	11	7	6	3	17	2
TCGGGTCGCCTAACGC	alt_5837_new	8	9	13	6	10	15	11	12	14	10
AGGAGACTTGTGTTCC	alt_5837_new	6	9	13	10	11	5	14	7	14	10
ATGTCGTATTCCTTAC	alt_5837_new	11	21	13	10	6	5	8	10	20	11
ACCTCCCCGGGACGAG	alt_5837_new	38	120	46	53	127	34	127	27	125	46
AACCGCCTTCCAGTCC	alt_5837_new	7	22	12	7	13	11	15	9	15	10
GGCGCCGCTTAAAAGC	alt_5837_new	73	111	95	72	142	72	138	65	148	77
GTAAGGTTTGCGCATC	alt_5837_new	10	39	21	16	31	15	33	21	29	19
TGTGGTGTCGCTTACT	alt_5837_new	3	10	4	11	15	6	13	10	17	7
GACTACGCTACCGTGG	alt_5837_new	4	6	3	1	3	1	1	2	2	1
GTATTGAACTTGGTCA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
AGGGTGGTGGGAGAGG	alt_5837_new	19	40	43	40	53	51	38	27	67	27
TCTTGGACCTGTTGAA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TAGTATGGACCTGGAG	alt_5837_new	29	58	35	21	68	34	62	35	70	28
CTCCATGGGGGTTTAC	alt_5837_new	33	40	42	23	36	23	53	40	49	25
CTATTGTTAAATCTCC	alt_5837_new	91	127	131	95	193	89	182	99	165	81
TCCTATAGCAACCAAT	alt_5837_new	117	179	133	118	190	107	172	108	198	115
AGACATGTAAGTCCAA	alt_5837_new	21	45	39	23	52	30	39	28	37	16
CGTATGATCTGCTCAT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
AGCGACTGTTTTGAGG	alt_5837_new	2	10	2	2	5	4	7	3	6	0
TCCGTAACGACATCTT	alt_5837_new	29	47	41	31	59	33	44	23	56	31
AACTCTGGATTAAATT	alt_5837_new	16	29	21	8	26	12	19	15	32	7
GCTGTTATATTACTGC	alt_5837_new	38	65	54	38	69	42	93	46	74	41
CGGTCAAGGTGGGCTC	alt_5837_new	6	13	3	4	26	7	24	6	14	3
CCGTGCCCGGCGATTA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TGCTCCATCCCGCACT	alt_5837_new	14	28	17	18	24	16	17	11	24	14
GCTTTCAGCGGGGATT	alt_5837_new	35	53	40	27	55	36	54	39	48	22
CTGGTATGTCAAGGCG	alt_5837_new	30	60	54	39	79	33	100	34	69	26
ACTGATGTTCCTGACG	alt_5837_new	6	18	6	17	18	8	22	6	17	10
CGTGAAGGCCATCTTC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTCTTATGATGGCGAC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TATTTTTGAGATGACC	alt_5837_new	13	19	9	14	20	14	24	7	15	10
TTGCGCGCCAGTATTC	alt_5837_new	9	3	4	5	9	3	9	6	12	8
GATTGAGGGATTTGTT	alt_5837_new	13	16	13	7	20	15	14	13	12	13
CCGCATGCCTGTCATT	alt_5837_new	6	12	6	6	16	3	19	7	24	4
TCGTAATCCACTTATC	alt_5837_new	28	33	36	22	57	40	56	24	45	34
GTACGCCAGTGGCTCA	alt_5837_new	15	22	20	13	15	9	22	17	27	9
TACTTGGTGCGCAGGG	alt_5837_new	12	20	5	6	16	7	8	6	15	11
CTATTCTGGCGAGGGG	alt_5837_new	18	38	21	17	32	19	30	23	28	17
TTACCTTATTTTTGGT	alt_5837_new	24	70	35	33	48	24	49	22	69	31
ACGCCCAGTCCTTATA	alt_5837_new	13	30	26	14	29	20	27	20	28	17
ACCTGGTACGTGTGTA	alt_5837_new	36	77	44	36	96	25	88	32	102	29
TATAGGTGGCGTCTTG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
AGCACTTCGTATGTGG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
AGTATAACTTTATTAC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
CCTTTTCCAGTCCTCC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TAGTGTCACTAGCATG	alt_5837_new	6	21	16	4	22	12	19	7	15	8
GGGGGTAACTTTGGGG	alt_5837_new	23	36	26	31	49	29	32	22	43	21
AATTCACCGTAGACTT	alt_5837_new	28	34	50	29	52	27	45	31	42	29
TACCACTGGTACCTTT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TCACGCCAAGCTTAAA	alt_5837_new	11	4	10	6	2	3	3	8	6	4
TCTCATTCTTCTTTAG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
ACCAGCCCTTCAACTT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TGATTGAGACACCAGG	alt_5837_new	33	47	38	32	37	39	37	24	44	24
CCACCACGCAATGTCA	alt_5837_new	1	3	0	0	6	1	2	2	3	2
GAGATCATTGCCATGG	alt_5837_new	3	3	2	1	1	4	3	4	1	1
CAAGTAAGCCATGACT	alt_5837_new	6	11	11	11	21	10	21	8	20	6
TTTTTTCCCGCCAGTC	alt_5837_new	74	106	98	77	122	78	122	78	114	68
TACTGATGAGGATCCC	alt_5837_new	5	3	4	6	11	8	15	4	5	8
GAGGTGACGACGCATT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTGATCTGCGCTTAGC	alt_5837_new	13	35	11	16	22	12	24	16	23	12
TCTTTAGCCACATCGG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTCGTGGCCAGATGTT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
GCGACATCCCATGTTG	alt_5837_new	5	10	5	2	4	5	4	4	9	4
GTCTAAATGCCTTTCG	alt_5837_new	9	16	17	8	23	10	26	12	20	8
TTCAAATGTCCGCCTC	alt_5837_new	6	12	8	5	9	4	3	8	6	4
GGAATGGTGGTGAAAC	alt_5837_new	26	25	23	22	20	20	24	21	31	25
CTTTTTCTTTTAGTGG	alt_5837_new	15	57	21	21	47	14	47	20	47	30
TGTCTCTTCCGGTTCC	alt_5837_new	19	24	24	24	26	29	26	15	24	7
GCTGGCGCTACAAGCT	alt_5837_new	0	0	0	0	0	0	0	0	0	0
CTCCCTTACTTTAAAT	alt_5837_new	10	52	14	8	67	9	59	12	79	7
ACTTTCTTGTAGTGCC	alt_5837_new	67	91	81	65	86	48	95	53	101	56
ACTGCATGTGCAAGGA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
GTATCTGCAAAAAACA	alt_5837_new	8	13	5	4	15	4	9	6	6	7
TGGACTACAAGTGAGG	alt_5837_new	16	14	10	10	16	14	21	9	15	24
AGATTTAATTTTCTAA	alt_5837_new	1	9	3	4	6	7	10	2	8	4
ACCTTTCACCTAGGTA	alt_5837_new	64	98	87	79	116	65	112	72	115	53
GTGGTCGTATCCAAGA	alt_5837_new	190	236	240	168	260	164	242	164	277	173
ATCGCCCTTTCGCCGG	alt_5837_new	31	27	22	25	28	24	41	35	46	29
GACCAAGTTGCAACCG	alt_5837_new	6	6	6	1	10	4	10	2	7	8
TCTTTGCCCATGGCAG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TGCGGAGTGTCATAGG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
ATAACTTCGTGGTTTG	alt_5837_new	69	84	72	61	98	60	101	58	96	75
GCACTGATTTAAGGTG	alt_5837_new	59	146	80	51	98	56	126	46	153	48
GTTACCCTTGGGCGGT	alt_5837_new	16	32	24	11	20	19	19	15	27	9
GGTTAATCTCCTCTCG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
AAACTGTGCTTTTTGC	alt_5837_new	28	49	48	41	48	39	48	24	67	30
CCTTCGGGCGGCCACC	alt_5837_new	36	50	57	49	72	44	67	40	64	39
GTTAAATTTACGTCGA	alt_5837_new	9	26	11	10	19	12	13	6	19	9
ATTGCCGAACTTACGT	alt_5837_new	20	14	19	17	24	5	11	6	36	7
TTTCCCTATTCACTAC	alt_5837_new	39	61	49	34	78	30	75	40	82	36
TATCGTTTGTGGGGGC	alt_5837_new	6	12	7	12	17	10	12	8	9	6
GGTATGTCTAGTAGCA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTGAGAAGCAATGTTT	alt_5837_new	8	4	3	3	3	5	4	5	6	3
ATTGTGTGCAGTATAG	alt_5837_new	2	12	15	8	16	6	19	4	13	5
CAGAACCTTGGCCACT	alt_5837_new	9	14	16	16	14	15	14	20	21	5
GGCCACAGTAGTTGCG	alt_5837_new	10	15	9	12	17	12	17	14	16	8
GCATCCTATCCAGATT	alt_5837_new	32	45	35	24	46	24	50	30	57	29
ATAATCTACCGCAGTT	alt_5837_new	9	7	3	3	9	6	17	9	3	11
GGCTAATCTTTGTTGC	alt_5837_new	17	28	15	19	20	28	19	11	23	19
GGATGAAGGGAATATG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTTTGGAGGGGTACCC	alt_5837_new	0	0	0	0	0	0	0	0	0	0
GTTCCATTGCCTGTAG	alt_5837_new	26	41	22	29	62	35	56	36	58	13
CCCAATATCGAAGTCT	alt_5837_new	9	11	8	13	9	3	8	10	16	10
CTTATGTCGGTCATGG	alt_5837_new	36	54	40	28	53	20	70	20	61	36
TCCGCAATAAGGCCGG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
GTCCTGACTGGTTCTG	alt_5837_new	81	126	107	67	125	83	94	82	130	74
CGGAATAGGGTTCACT	alt_5837_new	31	33	33	39	51	31	53	27	73	17
CACTCCGTTCGCACTG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TTTCATTGCTGAGCGC	alt_5837_new	3	4	8	8	6	5	7	2	16	1
TCGCTAATCAAACTAA	alt_5837_new	92	134	104	93	155	81	151	85	152	80
AAGTTCCTTCCGCTCG	alt_5837_new	39	56	43	40	46	37	39	26	65	40
TATTGAACCTTATTGC	alt_5837_new	14	21	19	18	34	19	27	15	41	6
GCTCTTGCTTCTAGTG	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TCCGCCGCGGAATTTT	alt_5837_new	0	0	1	0	0	0	0	0	0	0
GCTGGCGCTGGCACGG	alt_5837_new	11	13	10	18	18	9	17	7	22	10
ATGTGTAGCTAACAAC	alt_5837_new	19	35	24	15	34	21	56	17	25	15
CTTGTCTTTCCAGTGC	alt_5837_new	8	14	11	5	13	7	12	3	9	5
CGGTCGCTCTCCATTC	alt_5837_new	11	14	2	6	4	4	10	5	6	9
CCGCGCCTAGACTTAA	alt_5837_new	20	25	19	17	31	19	49	12	43	21
GATTTCTTTTTTACGA	alt_5837_new	0	0	0	0	0	0	0	0	0	0
TACCTCCTATCGATTG	alt_5837_new	26	37	22	18	30	18	36	24	14	18
CCAACGGTGCGTCATG	alt_5811_new	17	22	18	16	22	15	20	16	25	19
GTGGTTGTATCTATGT	alt_5811_new	3	8	9	4	11	5	13	10	6	5
GGCCTGTGGTTGTCCA	alt_5811_new	5	13	8	15	27	10	17	15	7	7
GCTGGATCAATATTAA	alt_5811_new	24	25	27	29	30	27	46	19	42	40
GCGAAACTGCTCCGGT	alt_5811_new	10	9	10	5	23	9	11	12	24	9
ATCCCTATGTCGTCCT	alt_5811_new	0	0	0	0	0	0	0	0	0	0
ATACCTTCACCCTCAC	alt_5811_new	21	25	26	34	39	18	44	12	27	19
GCGTGGGTAGGTACTC	alt_5811_new	13	9	12	6	18	9	6	3	16	13
GCACGCCATTCTAGCT	alt_5811_new	3	0	2	3	4	1	5	2	7	4
GTAAGCCTGCATTATA	alt_5811_new	34	44	42	37	70	28	41	25	41	39
GGGGGTAGGGCACCCG	alt_5811_new	6	5	5	4	4	2	3	3	0	2
ACAGCTAAGCCATTAT	alt_5811_new	49	51	39	29	44	43	42	36	80	46
GATTACTGTTCAAGAC	alt_5811_new	0	0	0	0	0	0	0	0	0	0
CTCGATTATCTGAAAA	alt_5811_new	37	41	47	36	43	25	61	35	53	19
CCACTCTTTAGGGCGA	alt_5811_new	0	0	0	0	0	0	0	0	0	0
GTTAAGCTGCGGATAC	alt_5811_new	16	39	25	22	31	14	37	28	27	20
CTGTGCCAAATGCTTG	alt_5811_new	5	12	4	4	16	3	12	2	17	7
AGACTTCAGTATACTA	ref_5811_new	33	25	21	27	38	20	18	12	49	21
GGAGTGAGCACGCTTA	alt_5811_new	27	47	22	22	26	17	38	21	35	31
CAGAAGGATGCCTGGC	alt_5811_new	54	86	69	58	80	45	86	57	84	61
CTACTCTCCAGTTCTC	alt_5811_new	3	9	5	3	2	5	9	3	4	9
TAAGTGGGTCTAACGT	alt_5811_new	30	37	19	24	32	18	34	25	32	21
GGCTGTCTGAGTCGTG	alt_5811_new	0	0	0	0	0	0	0	0	0	0
TATACAAAAGGCGAGA	alt_5811_new	0	0	0	0	0	0	0	0	0	0
AACCAGTTACCGCTTT	alt_5811_new	160	218	223	161	232	177	211	173	253	167
CGCGGGATGCTATAAC	alt_5811_new	44	42	46	36	53	27	44	29	43	36
AGTCGATTACGCTTTT	alt_5811_new	14	13	4	7	16	7	12	8	20	14
TACCCTATCGCCAAAT	alt_5811_new	23	45	39	36	48	30	37	20	43	21
CTCTTTTGTGGCTCTT	alt_5811_new	86	105	111	99	145	107	123	68	131	62
CAGGATCCCTTGTAGT	alt_5811_new	10	8	2	4	16	4	15	5	12	10
TGCTTGGTTTTGGGTA	alt_5811_new	22	42	41	32	54	18	56	30	66	20
GTTGTTGATCTTCGAA	alt_5811_new	17	28	24	12	35	13	24	11	23	9
GAGCTTACTAGGCGAT	alt_5811_new	0	0	0	0	0	0	0	0	0	0
CGCAATCTTGCCCCAC	alt_5811_new	23	26	34	24	21	14	29	25	26	23
TTTCACCCGTAAGGTT	alt_5811_new	5	4	8	5	7	3	8	5	11	5
TCCCCTTCGATATATG	alt_5811_new	42	86	78	55	113	47	90	42	77	32
TTCACGTCTGGTGATT	alt_5811_new	209	286	284	258	290	217	283	232	311	210
CTCTATCTCTACGATG	alt_5811_new	24	27	30	21	42	30	44	25	43	22
AATTCTCCCATTTATG	alt_5811_new	3	1	0	2	3	3	4	0	0	3
AGGATTCGCTATCGGC	alt_5811_new	8	16	19	15	17	18	13	12	20	12
TTTTCTCTTTCCGTTG	alt_5811_new	6	10	20	19	16	13	15	23	31	17
ATCCATCGCTCGTGAC	alt_5811_new	34	37	25	34	39	21	33	20	37	26
GAGAGCAGTTCTATGG	alt_5811_new	52	73	56	41	65	50	75	51	78	50
CGCAGACAATGCGGAT	alt_5811_new	60	155	83	64	170	80	159	49	177	55
AACGAGTATCTTTGAA	alt_5811_new	30	37	35	16	35	26	32	25	36	22
TTATGGATATCATGAC	alt_5811_new	6	6	12	9	12	8	5	8	7	11
TAATCCCTAGTACGCC	alt_5811_new	0	0	0	0	0	0	0	0	0	0
ACGGTGTATTATTATT	alt_5811_new	47	66	62	54	83	49	69	56	58	46
TTCTTTATCCGTTCAT	alt_5811_new	58	78	63	37	78	40	80	51	69	38
ATGTATCATCTCTCTG	alt_5811_new	15	26	18	16	13	9	24	16	23	16
AACTTACTGTTGAGCT	alt_5811_new	16	17	17	16	27	20	24	10	24	13
ATGAAAGCACTATGGG	alt_5811_new	40	50	50	29	46	24	35	28	37	27
CCTAACCGAGTATCAC	alt_5811_new	0	0	0	0	0	0	0	0	0	0
TTAATTAGTTGAGTAG	alt_5811_new	10	32	18	14	31	15	25	14	21	18
CCAGTATGTTTGCTCG	alt_5811_new	30	26	23	21	34	16	21	9	29	10
GCATTGCGGTAGGTAC	alt_5811_new	48	42	43	40	37	35	51	38	50	23
ACGCAAGGGGCTAAAT	alt_5811_new	0	0	0	0	0	0	0	0	0	0
CCGGCATGTTAGTGCG	alt_5811_new	0	0	0	0	0	0	0	0	0	0
CGTCCACATACATACA	alt_5811_new	17	22	22	17	19	10	26	12	22	16
GAGGCCTCCCACACAT	alt_5811_new	48	37	65	59	44	60	49	46	60	45
ATAACAACCATCGTCC	alt_5811_new	51	67	71	48	65	34	78	47	77	35
CAATTAGGTTGGACTT	alt_5811_new	0	0	0	0	0	0	0	0	0	0
ATGTATATGAGCTTTG	alt_5811_new	0	0	0	0	0	0	0	0	0	0
TTAGGATGACTTTTTT	alt_5811_new	0	0	0	0	0	0	0	0	0	0
GCCGTAAATCTATGTA	alt_5811_new	28	25	25	21	31	14	25	18	22	26
TGTGGCACTGTAATAA	alt_5811_new	0	0	0	0	0	0	0	0	0	0
TACCTGTGCGCGAAGC	alt_5811_new	6	9	6	1	11	11	13	1	13	7
GTTCTCGGCCGTCCGT	alt_5811_new	29	53	37	35	52	32	58	57	47	46
GGCCTTCTCCGCACAG	alt_5811_new	13	21	24	26	19	10	39	15	25	10
AGTTAAGTTGAGTGGA	alt_5811_new	8	14	11	6	11	3	13	5	14	3
CACGTACCAATTATCT	alt_5811_new	14	32	25	15	23	15	19	25	24	19
CAATCGCCTTTGATAA	alt_5811_new	0	0	0	0	0	0	0	0	0	0
AATACAGTCTGGCACG	alt_5811_new	0	0	0	0	0	0	0	0	0	0
ATTAGTTCCCCTATAA	alt_5811_new	33	38	43	40	63	28	59	34	48	38
GTTAAGGCTGGGCTGA	alt_5811_new	27	24	20	16	22	24	22	22	23	21
TACTTACCCTGGATAG	alt_5811_new	0	13	2	1	10	2	12	0	8	2
AGTCCATCCGCTTTTA	alt_5811_new	0	0	0	0	0	0	0	0	0	0
CGTCCGTATCTGAGTA	alt_5811_new	33	35	45	24	42	28	40	21	45	31
AAGTCTGGATAAGCAT	alt_5811_new	78	116	65	74	118	61	124	80	117	70
CCCGTCGGGTATATAC	alt_5811_new	6	16	14	16	22	10	20	7	19	16
AACATTAGATGGGTGC	alt_5811_new	19	26	29	22	19	23	24	21	21	15
AGTCGCATACTGCAGG	alt_5811_new	104	123	136	92	125	91	159	100	167	75
CCGAAGGCATATCCCA	alt_5811_new	65	89	88	74	96	57	99	63	102	62
TTAGTCTATGAGCGCT	alt_5811_new	41	82	55	52	70	35	64	48	73	45
AATGGTCTCCGGGAAG	alt_5811_new	148	143	154	161	174	125	192	134	180	135
TTCAATTGCCCACATA	alt_5811_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTTGATATACC	alt_5811_new	7	3	4	3	8	4	5	3	10	6
AACTGCTGGACCTCAA	alt_5811_new	0	0	0	0	0	0	0	0	0	0
ACTTGTAATACACGGC	alt_5811_new	0	0	0	0	0	0	0	0	0	0
GTTAACCGGGCAGGGA	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
CGTGGGCGACCACTGT	alt_3534_missing	2	9	1	5	2	2	9	0	9	1
AACCACGATACTACGG	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
TAAGGTTACGGTACTC	alt_3534_missing	13	15	9	8	12	8	11	15	16	6
GTACTCCCTGAAAGCT	alt_3534_missing	26	49	24	19	46	31	52	18	59	13
CTCTTCATTATGAGCG	alt_3534_missing	1	6	7	2	9	4	5	3	9	5
TAGGATTAACGGCAGT	alt_3534_missing	16	28	35	18	30	24	26	16	25	24
TCGAGTAACTTTGTAC	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
TAAATGCGGGTTTTAC	alt_3534_missing	31	48	33	24	50	35	59	23	38	29
TTTGTTATACTTTAGT	alt_3534_missing	47	110	71	68	122	71	103	44	98	58
TCTTTGAATGGTTGTT	alt_3534_missing	6	8	10	4	13	8	17	10	12	12
AGCGTCTGGAAACATC	alt_3534_missing	3	13	10	3	4	4	9	2	7	4
CATCTTTTGGCCCCGG	alt_3534_missing	38	41	55	43	48	42	52	35	59	38
TTACCTGCCAGGTATG	alt_3534_missing	14	104	33	23	135	31	148	16	115	24
AAGGATGTCACAAGTA	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
CGCAGGTTTGTATCCG	alt_3534_missing	26	44	37	35	49	29	47	34	48	19
CCGGATTTCGAACGGC	alt_3534_missing	1	37	5	7	34	2	34	1	39	3
GTTTTTGGTATTCCAC	alt_3534_missing	3	4	2	3	6	1	9	2	1	2
AGTAAGCTGTAAAGGG	alt_3534_missing	16	27	28	17	13	23	20	17	25	15
TTTTAGGATTTAGTCC	alt_3534_missing	10	25	18	15	19	17	25	17	27	21
TGTTCCAGCTCTAGGT	alt_3534_missing	3	13	8	6	7	3	11	6	13	4
AAAAACCTTTACGTGA	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
ATCAGGGTAGTTCGGT	alt_3534_missing	12	35	17	17	27	10	31	12	23	8
GTCTCCTCACTGCCCA	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
GAGTCTTGGTTTTTTA	alt_3534_missing	1	2	2	2	3	2	4	0	5	1
CTTTTAGAGTAGTGGG	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
CATATTTTGGATTTTG	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
CTGCACCCTAGATACT	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
CTTCGGGGCGTTTATC	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
GGGTTTGGTGCATCTG	alt_3534_missing	2	10	12	7	15	4	12	9	24	5
TCAGTGGATTCTATTA	alt_3534_missing	9	18	19	18	28	10	32	11	27	14
CTCTTTGAAATTTCAA	alt_3534_missing	12	12	10	9	16	10	19	15	18	13
CTTGCATTGCTTTGTG	alt_3534_missing	2	7	4	8	9	6	8	6	12	6
CGGCCGATGAACACTT	alt_3534_missing	3	6	3	4	10	5	5	3	7	1
ATAGCCACGACAACAC	alt_3534_missing	26	44	37	29	47	24	50	30	33	24
CTTTCGCCATCGCCTC	alt_3534_missing	6	13	15	8	16	5	20	11	16	11
GCACCACATGTCCCCG	alt_3534_missing	21	25	27	12	22	14	25	9	36	9
ACGGTCGATAGGTAGA	alt_3534_missing	23	54	24	38	36	24	47	31	37	22
CCGGCCCCCTCGTAGC	alt_3534_missing	17	19	28	19	36	15	31	22	42	15
TCCCATCGCCCCCCGG	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
CAGTGATTATTATCGA	alt_3534_missing	17	26	18	15	21	24	35	16	36	10
AATACGGGTTGCCCCT	alt_3534_missing	11	25	16	10	15	11	24	14	20	9
AGAGGCGGTGAACTTG	alt_3534_missing	31	66	43	41	54	43	42	32	52	31
CTCGTTCGCCCTGGGT	alt_3534_missing	20	21	12	18	12	9	21	8	27	13
TCGTAGCACTGATCCC	alt_3534_missing	6	9	9	11	15	15	17	10	17	5
GTCTTCGATCGGGCCA	alt_3534_missing	5	9	14	14	20	15	13	5	13	11
AAGCATCGGGTATTTT	alt_3534_missing	50	70	46	40	47	52	72	47	95	55
AGCATCTCATTTGCGT	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
GTTAATCCTGTCTCCT	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
AGCCTCCGTTTCGCCT	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
GTGACGAGTGCTACCT	alt_3534_missing	10	7	14	8	23	12	19	4	12	11
CCTCTTTTTTGCCGGT	alt_3534_missing	37	38	42	40	58	34	62	18	78	28
TTAGTCGCGCTCCTAA	alt_3534_missing	16	36	18	19	43	20	28	17	27	21
TGTTATTTCGCGGTAC	alt_3534_missing	8	19	16	13	20	15	21	14	31	16
CGCGCCTCAAATTTAT	alt_3534_missing	32	44	17	21	41	23	44	17	35	16
GAGACCAAGGGTCGGC	alt_3534_missing	2	7	5	8	13	7	13	6	13	6
AAACTTTGTGCGGGTT	alt_3534_missing	26	39	28	21	36	23	32	12	39	23
AGGACAGTTATAAACG	alt_3534_missing	42	57	31	35	45	30	74	27	74	35
ACTTTTATAGCCACTC	alt_3534_missing	13	30	17	10	26	18	36	13	38	11
CCAACTGCCCATCATA	alt_3534_missing	8	32	18	14	47	2	43	14	41	13
TATTGGATCCCGGACA	alt_3534_missing	100	161	134	119	165	109	163	99	182	98
TTTCTCGCTCCAATCG	alt_3534_missing	26	28	33	28	45	24	49	29	43	23
TAATTATGAGTCGCTA	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTTATGCATTAG	alt_3534_missing	10	13	18	16	19	16	19	7	24	8
CGTTGATTCGAACTCT	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
GCGGTCAAGCGTTTAT	alt_3534_missing	9	3	4	2	10	3	10	2	10	10
ACAGATGCGTGATTGC	alt_3534_missing	0	0	0	0	0	0	0	0	0	0
TTCGGGTCCTCAGTGG	alt_1284_upstream	5	4	3	4	6	3	3	3	5	4
GTTATAAGTTAATTCT	alt_1284_upstream	26	21	26	19	23	25	34	22	32	18
TTGGCCGGCGTGGAAA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTTTGGTAGAATT	alt_1284_upstream	10	4	15	9	9	15	9	22	6	15
CGGGAATCCTTTAACC	alt_1284_upstream	33	30	48	33	32	34	26	19	22	32
TATGTTATAGACTGTT	alt_1284_upstream	41	35	38	29	40	23	36	20	39	47
GACAACAGAAATATAG	alt_1284_upstream	4	4	9	9	8	9	4	3	10	8
AAAAGGTTTGGGAGGG	alt_1284_upstream	114	100	128	84	109	96	98	103	108	105
TAGTATTTTATCCTCT	alt_1284_upstream	28	40	34	43	37	43	37	24	38	37
CGCAATTGACTCGTCG	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCTCTCCCCGCGG	alt_1284_upstream	10	14	7	8	21	9	11	3	7	9
TGAGTACGCCGGCCAT	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
GCTATTATTATATCCT	alt_1284_upstream	36	31	41	38	39	39	25	28	38	34
TCTTATTGGCATTGTC	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TCGCTATTACCCATAG	alt_1284_upstream	5	8	9	11	3	10	9	7	5	5
TTCATACGGCGTCATT	alt_1284_upstream	57	44	68	56	44	42	44	49	59	36
GACAGAAAGCGGGACA	alt_1284_upstream	143	147	225	206	150	174	141	156	169	167
TTAACTACACGATTGA	alt_1284_upstream	32	20	53	32	26	30	30	36	26	33
GGTTCCCGCGGACAGG	alt_1284_upstream	65	66	81	93	54	63	76	78	65	69
ACTTAAAGAGTTGAGC	alt_1284_upstream	13	5	17	9	4	7	19	12	10	8
TATAGTATGCGGCCGA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TACTGAACTGACCTAG	alt_1284_upstream	9	1	8	9	4	10	7	8	3	6
GACTCTCTTAACGGGC	alt_1284_upstream	11	10	10	5	6	15	7	10	5	8
TGTATATAATACAGTG	alt_1284_upstream	1	4	2	10	1	7	0	3	5	3
CATCTTCTCCTTCACC	alt_1284_upstream	55	53	57	39	36	37	52	45	44	49
CCCAATTCTTCTTGCG	alt_1284_upstream	4	6	5	4	5	1	7	5	6	5
GGCTATATATTATTCA	alt_1284_upstream	88	62	82	83	73	77	59	59	79	66
GACACAAACACCCAGA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGTGGCCATTGC	alt_1284_upstream	17	17	40	21	9	17	14	15	10	9
CGTATAGTCCCTTGTG	alt_1284_upstream	42	44	71	37	51	52	48	48	43	54
ATAGTACTCGTGGCGC	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTCAGGTCCTCCA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGGGGAACATATG	alt_1284_upstream	16	18	14	11	13	13	16	18	21	11
AGCTCCAGATACTACA	alt_1284_upstream	8	9	11	1	9	9	5	8	7	9
GGCATAGCGTCAATCC	alt_1284_upstream	69	53	85	62	59	63	70	68	64	57
AAGTGCTCTGTGTTCC	alt_1284_upstream	7	6	10	4	5	7	6	12	4	8
GAAGAGATACTGGCCT	alt_1284_upstream	18	11	24	8	14	15	12	6	14	8
AAAATATACCTTACGC	alt_1284_upstream	16	3	8	7	12	7	7	9	6	4
CATAACATCCATTTTA	alt_1284_upstream	55	27	58	57	42	55	50	47	34	56
AAATCGCGCGCCTAGC	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGGACTCCGATAG	alt_1284_upstream	84	87	92	91	90	88	97	87	92	93
AAGGCTATATCCGTGA	alt_1284_upstream	83	53	60	67	57	66	81	72	63	63
GGAACAGCTGTTAACT	alt_1284_upstream	19	18	15	15	13	15	11	23	10	20
CCGAATGAAAGTCTAA	alt_1284_upstream	34	33	52	45	26	29	33	46	47	36
GGTCTTATCGGCTTGC	alt_1284_upstream	10	10	17	20	21	12	18	19	13	11
TGCACACTGCGTGGGA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
AGATATGTGTAATTGG	alt_1284_upstream	98	103	128	99	91	105	101	97	103	83
AAAATCGACCTTCGCA	alt_1284_upstream	29	17	18	16	25	22	29	29	32	22
TTGGTCCTTTGAGTCC	alt_1284_upstream	10	4	12	12	9	7	17	3	11	16
TTTACGTGCTGTAGTC	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
CAGAGCAAACGCCAAC	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCAATTCGGACCT	alt_1284_upstream	31	23	31	27	23	33	18	17	23	22
TTTCTACCGCTGGGAA	alt_1284_upstream	6	8	9	3	4	13	9	5	10	6
AGTCAGTCCCTAATCC	alt_1284_upstream	36	25	44	22	30	29	33	21	20	33
TGTCTCACTTGGTAAC	alt_1284_upstream	52	41	55	64	53	43	47	36	48	39
GGATGCCGGTCGCAGT	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
GAACCGCTAACGTTTT	alt_1284_upstream	96	107	117	85	116	91	121	98	143	63
GGATCTTCCGTCTTGT	alt_1284_upstream	127	82	141	133	87	111	111	96	100	95
GGTAATCGCGCTGGGT	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGCGCAGTATAGC	alt_1284_upstream	68	67	105	79	97	81	71	68	89	69
GGGCGCGCCCGATTAA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
CTGCTGAGTAATAGCC	alt_1284_upstream	10	5	14	11	6	8	11	6	5	5
GTGCTTTTTGCATCGG	alt_1284_upstream	16	13	22	22	21	16	25	17	14	19
CCCAGGCTCGTGACTA	alt_1284_upstream	1	2	1	1	1	0	1	2	2	0
ACACCTGACGGGATTA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGCCCCCCGCCC	alt_1284_upstream	10	5	6	3	1	10	2	7	2	8
ATTAGATTCATATCAA	alt_1284_upstream	95	63	77	48	61	82	83	85	60	70
TCACTTTGCGGGGTAC	alt_1284_upstream	6	7	14	9	4	7	11	7	9	5
GTGGGTTACCTATTTC	alt_1284_upstream	68	48	103	72	67	64	65	71	50	71
CGCGACACGCACCCCC	alt_1284_upstream	13	39	27	38	33	31	46	27	39	25
ATAGTCATTGCTCTGC	alt_1284_upstream	18	17	19	14	26	16	15	13	29	18
CCCCAATTTTGGTGTG	alt_1284_upstream	104	127	134	131	106	112	107	105	106	104
CTGGATGTTTGTCAAA	alt_1284_upstream	120	135	168	121	143	139	148	139	157	134
AAGCAATCATTGGTAT	alt_1284_upstream	6	10	11	11	6	19	4	10	13	13
AGGTGATTTGTGCAGT	alt_1284_upstream	4	2	1	1	4	4	1	1	1	1
TTGGCTGTCTTGTCTT	alt_1284_upstream	5	8	2	11	8	9	1	5	8	3
TGTCAGAGGGAGCTTG	alt_1284_upstream	30	24	12	12	15	19	25	18	17	14
ACTAATTCTCTTTTTA	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
TTACGACCTTGCAGCC	alt_1284_upstream	67	63	92	68	71	79	90	55	68	81
CGAGGGGTGCCAAATC	alt_1284_upstream	37	18	47	32	33	47	28	27	28	29
TCCCCCCTTCGTCTGG	alt_1284_upstream	9	10	9	3	11	6	10	7	11	3
TAGTTTTTGATACAGT	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
CTATTCCGTTGGACTG	alt_1284_upstream	0	0	0	0	0	0	0	0	0	0
GCCGGCTCTATTGCAT	alt_1284_upstream	196	263	266	224	289	198	272	177	245	175
TGTGACTAGGTTGTCA	alt_5006_missing	238	83	253	230	114	199	100	179	111	171
CACACCCTTTTATGCG	alt_5006_missing	137	130	200	188	117	183	137	174	121	161
AGGCTTGGCACATTGT	alt_5006_missing	94	37	117	139	40	100	45	112	54	85
TTCGTAATGCTGAGTA	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
ATGATCTAATCGAGGC	alt_5006_missing	5	5	10	10	0	3	0	7	6	6
TTGTGCTGTTTCGCTC	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
GTGTGTCCCAGTGATT	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
CAGTAGTCTGGGTTCG	alt_5006_missing	174	102	242	193	104	152	104	164	84	157
CCTCCTTAGCGGGTGT	alt_5006_missing	6	3	5	2	9	2	0	5	0	5
TTAATAAGTATTTAGG	alt_5006_missing	4	4	2	4	2	2	4	3	1	3
TATACCACGAGCTCAT	alt_5006_missing	5	2	5	6	7	3	5	1	4	6
TCATTTCCACCAGCGA	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTTGATTAGAAT	alt_5006_missing	6	6	14	6	3	7	0	6	4	7
CTAATCTAGCCTATCT	alt_5006_missing	2	4	21	6	8	14	5	16	5	4
TCGCCCATTTCTGGAT	alt_5006_missing	54	36	76	50	36	50	22	49	42	41
ACGGCCTTGCAGTGGG	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
TGCCTATCAGTTGTGA	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
CTTGCTGACGGCTACA	alt_5006_missing	75	43	90	79	30	77	28	59	36	39
GCTCTATGGTTTTGTT	alt_5006_missing	32	19	39	41	12	20	16	31	12	29
GGTCTCTTCTTTGGAC	alt_5006_missing	170	85	225	224	84	221	106	189	97	170
GGACCACTTCATGTCC	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
TACCCTGCGCCGTAAC	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
CTAGGTTTGCCCGGTT	alt_5006_missing	14	5	17	16	6	14	8	14	4	7
ACATGTGTTCGTTGGG	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
TCGTTGCACTCCATAC	alt_5006_missing	2	7	4	9	5	0	2	5	7	0
ACTGTATTCTTCAGGT	alt_5006_missing	291	175	405	343	160	272	147	267	153	253
TTAATGTTAGCTCGTT	alt_5006_missing	0	0	0	0	0	0	0	0	0	0
CTCATTACCTAGGTAA	alt_5006_missing	96	53	108	124	54	95	52	101	54	86
ACAGTTTTCCGTTCTA	alt_941_missing	0	0	0	0	0	0	0	0	0	0
GGACGTAGTGACACCA	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CTTCTGGCTAGTATCT	alt_941_missing	4	11	3	6	17	4	7	2	7	1
GCCCCATCAGACTCGC	alt_941_missing	13	20	15	8	8	5	11	10	14	9
GGGATCGTTTTATATG	alt_941_missing	15	36	25	18	45	20	42	24	39	17
CTGTGTTTATTTATCA	alt_941_missing	17	27	20	13	44	15	35	13	51	7
TAGTCTTTAATTTTTT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
ACGCCGTCGTTGAGTT	alt_941_missing	7	24	17	8	26	7	25	14	27	9
CATCGGGTCTTGCTAG	alt_941_missing	17	31	16	14	40	9	41	27	25	16
CTACGAGAATTCCCGG	alt_941_missing	15	40	22	19	21	17	33	23	42	17
GTCGTTAACACAGTGG	alt_941_missing	0	3	0	1	3	1	3	2	5	2
CGGCTGATTTGCGCCC	alt_941_missing	14	49	20	13	52	10	36	6	48	17
CAATGTAAATTTTATT	alt_941_missing	10	14	12	12	14	12	13	11	19	11
CTTGTTTACTCGGCAG	alt_941_missing	26	44	15	25	47	20	50	24	40	17
GCTGGTGTCTTTTTGC	alt_941_missing	0	0	0	0	0	0	0	0	0	0
ACTTAGATTGGTTCGT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
TGGCGGGCTTTACTTC	alt_941_missing	79	107	58	70	118	57	115	75	157	79
CCTAACTAGCCCCTTG	alt_941_missing	3	28	3	3	22	4	21	1	32	3
GTTCTAAATATAGTGG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CTGGGCACGATAAAAA	alt_941_missing	12	17	26	16	27	6	29	7	23	10
ATCCGAATTAATATGT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
ATGTTTGGGTGGGAGT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
TGAAGGGTCCTTGTTG	alt_941_missing	13	20	13	18	22	16	21	7	13	10
TGATCCGTACCGTTAC	alt_941_missing	4	6	3	5	10	4	11	5	10	8
CTCGTATGAACTGCCA	alt_941_missing	4	12	6	7	5	3	8	6	16	10
GCTCCAAGAGGCACTG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CGCTTTGAATCCTTTT	alt_941_missing	5	9	4	4	17	5	7	7	15	6
GATTTTATCGGAGTTG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
GGTCTTAGAATACGGT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
TCCACACGGTTCGTAG	alt_941_missing	12	9	8	4	8	5	16	3	14	7
ATACTCTCAAGATGCC	alt_941_missing	0	0	0	0	0	0	0	0	0	0
AGTGTACACGCACCGT	alt_941_missing	0	5	1	0	6	0	4	0	3	0
AAAGTCAACTGTCGCC	alt_941_missing	16	28	14	20	33	4	35	17	33	10
TTTGCGCTTTCCTATC	alt_941_missing	17	52	19	15	37	9	40	11	34	12
GATGACTGAACCTGAT	alt_941_missing	4	7	7	4	8	9	11	3	10	2
TCTGGCGAAAGAGAAC	alt_941_missing	7	21	11	10	15	7	23	6	21	8
GGCACTATGTCAGGCT	alt_941_missing	14	22	10	9	34	10	36	10	29	13
ACGCTTGTGGCCGGGT	alt_941_missing	13	30	14	17	30	11	28	18	24	19
CCCACGCGCGGTGACT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
GTAAACACCAGTACCC	alt_941_missing	0	0	0	0	0	0	0	0	0	0
GTATGGTTGGGTTGCT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CAGGAGGCTAAGCAAC	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CGGTGCTTTTTAATTT	alt_941_missing	22	28	14	7	17	16	19	3	27	7
CCACCAAAATTCCCTT	alt_941_missing	9	29	10	14	34	10	21	18	15	10
GCGCTGACCGGCGCCT	alt_941_missing	20	49	31	20	38	27	52	27	51	32
TGTATTCCCCGATGAT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
TTCGCGACGAGGCACC	alt_941_missing	16	25	16	3	26	6	23	8	21	8
TTTTTGATGTATAGTG	alt_941_missing	0	0	0	0	0	0	0	0	1	0
CCCCGGGGCAGGAATT	alt_941_missing	63	95	70	71	107	66	109	51	101	60
AACATCGCCATCTTGT	alt_941_missing	33	60	29	37	43	42	68	34	53	21
CCCGCCTGGACTTCGC	alt_941_missing	5	25	17	13	23	8	20	5	20	7
CTCGGGCAGGCGTATT	alt_941_missing	7	16	4	5	7	5	5	6	14	8
TTTTAACGTGTGGTTT	alt_941_missing	59	109	64	53	117	52	100	57	123	52
TTTCGGGCTTGTTGGT	alt_941_missing	3	17	8	9	14	8	18	9	12	1
CTGGTTTGATAATTCA	alt_941_missing	0	0	0	0	0	0	0	0	0	0
ACTCACATGCATGTGC	alt_941_missing	11	53	11	4	48	6	44	7	51	10
CTCCACAGATATCGTA	alt_941_missing	2	7	4	3	4	7	9	1	9	4
GAACAGTTGACACTTT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CAGACTTTTCTTTATG	alt_941_missing	7	20	15	7	14	7	15	9	20	4
CAAATCTTCCCGGCAG	alt_941_missing	14	28	17	16	29	20	37	12	28	16
GCTTACGAATGTGAAT	alt_941_missing	5	10	7	6	18	3	14	3	7	3
AGTTTGGCCACAACGC	alt_941_missing	2	2	1	2	4	1	5	4	7	4
TTCATGCTCCCGGATT	alt_941_missing	2	2	2	1	2	3	1	1	4	1
AGTGCATCATACCCGT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
AGCACAGGAGACTAGG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTGGACTTCCAG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
TTGATTCTCGGCGATT	alt_941_missing	49	84	64	49	71	38	83	35	88	45
AGCTCTTATAATGTTT	alt_941_missing	23	33	22	17	47	23	33	25	35	20
GTTCAACAGTGGGGCC	alt_941_missing	41	55	50	43	72	46	77	29	77	31
TAGGGTCACTTCCATC	alt_941_missing	16	13	9	5	18	11	23	12	28	9
CTTCAATACTCCCATG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CAATTATATTGGGGGC	alt_941_missing	3	8	0	3	3	2	8	2	4	2
CACTTGTTGGCGGTGT	alt_941_missing	0	0	0	0	0	0	0	0	0	0
GTCTTCGTTACTACTT	alt_941_missing	7	5	3	5	11	6	10	4	13	5
GGCGCTCAATACCCTC	alt_941_missing	2	14	3	4	5	5	6	3	10	2
AAGGATTGTCTGGGGC	alt_941_missing	11	17	25	12	25	8	40	19	31	15
CTAGGACGTATCGTGG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CCTGGGTTGGACAAAG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
TCTCTCCGTGTGTCGT	alt_941_missing	8	19	16	12	17	7	31	9	27	8
AACAGCGTCTACTGTC	alt_941_missing	0	0	0	0	0	0	0	0	0	0
CCGGATTGGTTTTCCG	alt_941_missing	0	0	0	0	0	0	0	0	0	0
ACCTGAAGAAATTTGC	alt_6050_new	3	3	5	0	6	4	3	2	4	4
TCCAGCGTTTAGTAGT	alt_6050_new	10	48	19	5	53	12	71	17	58	10
TACTGCACCTTTGGAC	alt_6050_new	16	47	12	10	30	13	29	13	40	19
CGTTACAGTCGCAATT	alt_6050_new	0	0	0	0	0	0	0	0	0	0
CCTCATTCGGATAACT	alt_6050_new	42	89	40	33	95	50	99	33	68	37
AATTACAAAGGGGTTG	alt_6050_new	15	37	22	27	34	17	36	28	32	26
TTCGAGATAGATTACT	alt_6050_new	101	144	111	104	154	103	191	94	175	97
GATCAATGTCTGACAT	alt_6050_new	24	23	18	16	28	22	36	21	33	22
TTAATACCTCTGCCCA	alt_6050_new	16	27	14	25	25	11	35	19	35	15
TCCGAGCAAGACACTG	alt_6050_new	8	13	6	13	19	14	10	4	15	9
CCCAGTTCGTTAACAG	alt_6050_new	3	21	4	5	12	2	22	4	14	4
TTTGTCAATGTTTTTG	alt_6050_new	45	36	40	27	49	20	66	35	61	22
CATCGACTATACGGTG	alt_6050_new	0	0	0	0	0	0	0	0	0	0
AACGTAGGGATTATAA	alt_6050_new	0	3	4	5	4	2	1	2	4	0
AGCAGTGCCTTCATAC	alt_6050_new	213	391	293	222	345	212	396	229	391	203
CTCCTACGTTGTTAAT	alt_6050_new	0	0	0	0	0	0	0	0	0	0
CAAGCTTGATCGCCTC	alt_6050_new	35	39	35	43	65	33	44	30	45	35
AGGAATGGTCACAAGG	alt_6050_new	1	4	4	1	1	0	0	0	4	3
TCGCAATGCCAAGGGT	alt_6050_new	14	30	19	20	15	19	23	15	30	8
CTCTCGTAACATTAGT	alt_6050_new	8	16	12	8	16	4	18	12	19	3
CTCCTCACCTGGAAAC	alt_6050_new	0	0	0	0	0	0	0	0	0	0
CCTCCCATTACATGTT	alt_6050_new	9	15	9	7	20	10	18	13	27	6
TCCAGAGTGGTGTGGT	alt_6050_new	0	0	0	0	0	0	0	0	0	0
ATTTCGTAGTTTTAAC	alt_6050_new	10	21	15	11	21	10	24	11	24	12
CTCAGTCCAGGAGCCA	alt_6050_new	23	29	11	15	26	13	46	19	41	15
TTACCATGCGAGAACG	alt_6050_new	0	0	0	0	0	0	0	0	0	0
GTAAAAGGCTAAGTTC	alt_6050_new	15	35	21	9	16	19	36	19	38	23
AGAATCAAGTCTGGCA	alt_6050_new	0	0	0	0	0	0	0	0	0	0
TGTCGGTCTCCCGGAG	alt_6050_new	4	9	13	5	12	10	11	5	15	5
TCAGCTCTGGTTGCGT	alt_6050_new	2	16	2	1	18	1	21	1	17	3
AATTCTTATTCAGCCT	alt_6050_new	277	381	308	261	408	233	445	205	439	182
TATCCGAACGGGTTCG	alt_6050_new	20	29	21	8	41	17	24	27	43	19
CATTTTGTTAGATCTT	alt_6050_new	18	15	18	8	14	10	16	7	16	4
TATACATCGAGGAAAG	alt_6050_new	17	25	39	27	31	17	27	17	37	21
CGCTTGACGTGTCCCT	alt_6050_new	10	26	5	4	26	13	19	4	25	8
CCTAACGCTCGCCGAG	alt_6050_new	0	0	0	0	0	0	0	0	0	0
CATGTCCGTAATAAGG	alt_6050_new	0	0	0	0	0	0	0	0	0	0
TATTTTCCTTGACACC	alt_6050_new	7	26	9	13	22	19	34	8	17	7
CAATTATCGACAGTTC	alt_6050_new	22	33	34	18	32	10	40	26	25	19
TATTCCCGGGATTGCG	alt_6050_new	5	7	3	3	6	3	4	9	15	4
CGCCCCTTCTTCTTAG	alt_6050_new	42	61	60	44	60	43	64	46	65	34
ACGTTATGCTCTAACA	alt_6050_new	0	0	0	0	0	0	0	0	0	0
ATCGTGGGGTGTGACC	alt_6050_new	4	2	2	1	3	2	4	1	5	0
ACAAAAACAACCGCTC	alt_6050_new	17	30	18	24	24	23	28	16	24	10
GGTACAGCACGTGTTC	alt_6050_new	2	8	7	4	8	3	7	4	14	8
TCGTAGACGGCCAACT	alt_6050_new	18	34	15	14	33	11	29	14	15	8
GCGTGTTCGTCCCATT	alt_6050_new	0	0	0	0	0	0	0	0	0	0
GCCGACGCCTCTTTAC	alt_6050_new	26	43	20	10	46	21	49	12	59	11
GATACCAGAACCTTCG	alt_6050_new	35	41	22	23	39	14	43	25	42	22
TTTTAACTGAGTCGGC	alt_6050_new	0	0	0	0	0	0	0	0	0	0
ACGCTGATGCACTGGT	alt_6050_new	43	88	68	57	97	53	82	41	97	57
CGGGTTTAGATTGCCC	alt_6050_new	6	15	9	16	20	8	17	5	13	5
TATCCTTCACACTTTC	alt_6050_new	2	3	4	3	3	8	3	6	7	4
AATCAACATACCAGCC	alt_6050_new	10	15	18	8	22	14	9	13	12	5
GCATTTTTGCTATAGC	alt_6050_new	4	9	13	8	19	5	12	7	13	10
TGGCCAGGGCGTCATC	alt_6050_new	0	0	0	0	0	0	0	0	0	0
CGGAGCGCCAGGGGCA	alt_6050_new	12	18	15	21	19	10	23	12	22	10
AATCATACGTTATTTA	alt_6050_new	26	45	29	27	41	30	40	20	34	26
TCGAGGGCGCCGTTAT	alt_6050_new	5	9	12	4	12	5	7	5	18	8
TGCAGGGAGCTTCCTA	alt_6050_new	6	13	7	6	7	6	19	10	14	8
GCCACATTGCATCGTC	alt_6050_new	25	44	29	31	38	23	48	19	47	17
ATAACTCCGTACTCCA	alt_6050_new	11	16	16	13	28	7	22	9	15	10
AGGTTTGCCCATCCTG	alt_6050_new	6	5	5	4	14	5	10	5	9	7
TGTTCTACCTACCCTT	alt_6050_new	2	10	9	5	8	2	9	3	11	5
TTGATCGGCGCGAAGC	alt_6050_new	0	0	0	0	0	0	0	0	0	0
TAACTTTGATAAAGGG	alt_6050_new	54	75	82	58	98	51	90	54	87	59
ACGCTTCGTGTGGCTG	alt_6050_new	0	0	0	0	0	0	0	0	0	0
TGCAAATTCCGCGAGA	alt_6050_new	19	24	22	18	26	29	28	22	34	12
TGTTAATTAGTGGGGC	alt_6050_new	0	0	0	0	0	0	0	0	0	0
ATTATAGTGGGAGAAC	alt_6050_new	64	141	57	55	114	59	121	45	123	50
TCGTGGCCCTGCCTCT	alt_6050_new	11	16	11	14	14	9	12	13	26	6
TAGTCAGTCCGCGCGC	alt_6050_new	14	32	21	16	30	14	28	15	35	17
TGTACCGACAACTGGA	alt_6050_new	20	46	16	31	33	34	35	23	38	22
CTTATGTACGAAGGTG	alt_6050_new	20	31	24	33	44	20	19	28	42	17
GGTGTAACTCCGCAAT	alt_6050_new	46	71	65	59	62	47	64	36	66	42
GGAAACATTCTCTTAA	alt_6050_new	39	58	39	34	69	24	68	37	59	46
CTTGTTCCAATCCCTT	alt_6050_new	0	0	0	0	0	0	0	0	0	0
TACGTCGGCTTTAGTT	alt_6050_new	19	40	13	7	29	17	26	12	41	9
TAGGCTCTAATCTGGT	alt_6050_new	87	130	102	86	142	81	154	85	142	82
CAGCCGGTAATTCTTT	alt_6050_new	5	12	4	6	14	2	16	6	16	3
GTTTCCTGGATTTCTT	alt_6050_new	0	0	0	0	0	0	0	0	0	0
ATCGATCCAGTTTCTG	alt_6050_new	15	30	21	19	37	19	33	25	35	17
GACCGGGTTGTATGTG	alt_6050_new	46	76	60	48	93	51	118	40	108	31
ATTGTTGTTAATATTG	alt_6050_new	30	36	34	20	31	24	26	18	33	10
TTGCCTACCAGTTATT	alt_6050_new	10	13	6	4	9	4	13	12	18	6
GTTGTTACGTGTAGGA	alt_6050_new	0	0	0	0	0	0	0	0	0	0
GGCCGGCGGTGCTTGT	alt_6050_new	31	33	21	25	34	23	42	25	46	30
AATGTACAAGGCGCCT	alt_6050_new	21	45	39	27	51	46	42	24	63	22
CACCTGTCCACGTCTC	alt_6050_new	15	44	20	17	50	17	52	17	53	16
TTAACGCTTCGCGAGA	alt_6050_new	4	6	3	5	7	3	7	3	8	0
CAGGTGCAAGTTGGGT	alt_6050_new	15	39	9	8	43	14	31	10	44	9
GGTTGTTTGGCTTCGA	alt_6050_new	3	4	7	4	6	2	8	5	4	3
CTTATCGGTCAGTACG	alt_2645_negative	11	20	28	16	14	18	21	19	32	17
CTCGCACGGGGCCATG	alt_2645_negative	45	45	63	37	60	38	76	36	67	40
AGTTCAGTTTTCTACG	alt_2645_negative	13	28	15	8	25	8	22	18	19	16
CAACTTAGCCCGATTC	alt_2645_negative	10	4	5	4	7	3	4	6	2	5
ACTTGTTCTGATTCTC	alt_2645_negative	9	23	19	17	22	12	18	8	24	13
TCCGTATCACTACAGC	alt_2645_negative	0	1	1	2	2	0	2	2	5	3
GTTTTGGTGTCTAATT	alt_2645_negative	56	117	83	52	96	55	101	50	77	54
CTGTTCAAATAACGAT	alt_2645_negative	49	63	56	47	72	43	88	40	83	52
TGCCCAGAAACTTGGA	alt_2645_negative	25	35	43	36	50	28	61	33	49	33
GTGATCTAAGAGCTAG	alt_2645_negative	50	38	44	32	57	29	52	24	43	35
ACTAGCGGGTCTTTGT	alt_2645_negative	19	26	18	15	46	18	35	16	24	12
TAACCTGTCCCGGGCC	alt_2645_negative	11	13	19	14	15	10	14	15	11	13
TGATATCCATTTTATG	alt_2645_negative	6	8	5	3	8	3	6	2	6	4
GGGGTTGTATTTACAG	alt_2645_negative	184	226	219	196	307	215	296	164	321	163
CATTTGTTATCCCGTC	alt_2645_negative	46	74	66	65	85	52	89	51	87	64
TTTTTTTTGTTTAAAC	alt_2645_negative	128	184	129	134	198	109	175	111	213	104
GTGTCGTCATTACTTC	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
CTCGTGTAGATGCGCT	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
CACAGCTGCGAAATGG	alt_2645_negative	24	30	19	19	35	25	30	12	39	12
TACTAGTTATGTACTG	alt_2645_negative	15	16	19	16	27	14	21	13	32	7
TCTATAAGAAATAAAG	alt_2645_negative	31	37	37	39	38	29	30	14	34	12
CGTTGGTCCTAATTTG	alt_2645_negative	3	2	4	10	3	8	2	3	9	5
ATGTATCAAAATCGCG	alt_2645_negative	7	11	7	7	11	8	14	11	8	9
GCTGTGTATCTCATCT	alt_2645_negative	11	24	18	16	10	8	18	13	16	13
TTATTCTCGTACGTTT	alt_2645_negative	185	275	216	214	244	178	279	175	312	157
CCCACATCATTTCAGA	alt_2645_negative	63	91	67	61	83	54	91	44	67	46
CAGGTTCGTCGGTAAA	alt_2645_negative	42	78	70	46	97	52	93	38	104	39
TGTGAGTAGTTCGATG	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
TTCACACTTGTTTAGG	alt_2645_negative	83	110	101	90	142	65	143	74	164	73
TTTTCCGCCGCTTAGT	alt_2645_negative	67	128	98	59	118	80	123	86	133	67
GCGTGATCGCGCTGGA	alt_2645_negative	30	30	35	16	31	18	27	14	38	15
TTATCGCTTTCTCTCC	alt_2645_negative	109	130	151	116	127	104	115	109	134	112
GGTCCTGTTCGCAGTT	alt_2645_negative	31	41	33	38	32	28	31	17	27	22
TAGGCATGCGGTAAAC	alt_2645_negative	40	51	39	30	49	30	45	23	53	36
TGATGAGTGTGACAAA	alt_2645_negative	20	38	14	19	30	16	29	16	39	17
GCTACCCCGTCGGTTT	alt_2645_negative	7	63	7	7	48	4	43	14	41	11
ACAGTGCTAGGAGGGG	alt_2645_negative	24	39	44	24	44	25	31	28	32	26
AAGAGCTCCATCGTGC	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
CTGGTTTTTGGGACTA	alt_2645_negative	6	19	8	4	7	6	13	7	9	4
CTTCTCAGTAAGGAGG	alt_2645_negative	8	21	17	5	16	11	19	7	19	12
TTGATTCACCGATCTT	alt_2645_negative	1	4	1	1	0	1	8	1	0	3
GTAGGTCTTCAACTGT	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
GGTTCCATTTGTGTCA	alt_2645_negative	34	44	35	34	73	20	51	32	45	30
CGCGGAAAGGCTGTGC	alt_2645_negative	6	60	14	15	57	7	50	11	51	7
ACCTCGACTGTTGACC	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
CCATCTCTGATGATAT	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
TGCCAGATCCAACGAA	alt_2645_negative	32	48	30	33	52	44	49	23	52	21
CTCACGAGCTATAGCC	alt_2645_negative	0	4	1	2	2	3	1	2	5	1
GCTCCTTGTAGCGCGT	alt_2645_negative	22	24	43	30	46	18	39	39	34	36
TGTAACTCTTCCGTCG	alt_2645_negative	2	2	4	3	11	1	14	3	6	2
ACGCTTGGTTTTGAGA	alt_2645_negative	11	11	7	7	15	4	8	3	14	4
AGATCTCTTACTCTAT	alt_2645_negative	0	0	0	0	0	0	0	0	0	0
CACGTGCTCTATTGTG	alt_2645_negative	0	1	0	2	0	0	0	0	0	0
CATCTGGTTTGATATG	alt_2645_negative	22	36	28	21	37	23	58	19	37	17
TCTTCATTCCTATAAC	alt_2645_negative	35	49	33	40	49	29	44	27	49	40
TTCTAGGCCAGTATGG	alt_2645_negative	4	5	1	2	9	8	7	6	4	0
CTCCTTATATAGGTAT	ref_5770_new	95	143	117	83	173	86	175	74	190	95
GTACTTCTCGGACGTT	ref_5770_new	92	72	80	67	102	59	90	54	103	59
TTAAATGAGGTCTTGA	ref_5770_new	30	36	36	15	50	28	44	30	55	25
GCTTAGTCCATGGTGA	ref_5770_new	9	12	8	3	9	9	19	12	17	5
AAAGTAATGAGTACGC	ref_5770_new	5	1	0	0	0	1	2	0	0	0
GTAAGCACTATATTCA	ref_5770_new	14	24	16	15	21	13	21	12	35	9
GGTCCGGTCGTCTTTG	ref_5770_new	33	37	23	38	34	23	34	41	36	27
TGCGTTAGGTACACAG	ref_5770_new	14	19	14	13	16	13	20	20	25	8
ATGTTTCACTCCATGA	ref_5770_new	15	24	13	13	23	13	25	11	25	15
CAGCGGTACATCTCGG	ref_5770_new	0	0	0	0	0	0	0	0	0	0
ATTCCGGCGCGATTAA	ref_5770_new	33	27	30	33	52	20	44	32	26	35
CCGCTCTTATCGTCTA	ref_5770_new	0	6	2	0	8	0	3	2	10	0
CCATATGTCCGAAGTA	ref_5770_new	3	12	3	5	14	4	7	5	8	2
AGAATAAATCTTTGCC	ref_5770_new	0	0	0	0	0	0	0	0	0	0
CGTCTTACAGGACAAA	ref_5770_new	19	26	17	18	37	15	29	16	29	15
CAATCAGTAGTCCGGA	ref_5770_new	90	155	122	100	144	92	160	106	166	96
GGTACCCTCGGTGTCA	ref_5770_new	0	0	0	0	0	0	0	0	0	0
GTCGGTTCGCTCCGTC	ref_5770_new	3	3	3	1	5	4	0	3	0	3
GAGCTTTTGGTGGTGG	ref_5770_new	2	11	3	5	7	6	1	6	4	4
TTAACCGTAGTCGGCA	ref_5770_new	10	11	19	22	13	8	17	7	30	19
TATGTAGTGTGTTAAC	ref_5770_new	86	97	77	76	103	55	100	56	109	63
CCGAGCGTTAGGAAGT	ref_5770_new	3	1	3	0	2	0	0	2	1	0
GGGCAGGTCTCCGATG	ref_5770_new	0	0	0	0	0	0	0	0	0	0
TGGTCTCAGGCGGTGT	ref_5770_new	0	0	0	0	0	0	0	0	0	0
GGTCTCTACCTACATC	ref_5770_new	24	37	31	23	43	17	41	34	43	12
GACCGACTCACAGTTC	ref_5770_new	12	11	11	13	10	9	20	9	23	12
TTGACGCTGCTTCCGT	ref_5770_new	0	0	0	0	0	0	0	0	0	0
TTGCATTCATCAAGCA	ref_5770_new	4	2	3	2	7	5	5	10	6	2
TTTAGGTCTGACGCGC	ref_5770_new	37	82	39	44	102	24	75	38	97	32
CACGTACGTATTTAGC	ref_5770_new	17	38	30	21	30	21	25	18	29	15
GTTCGTATTAGGCTAA	ref_5770_new	0	0	0	0	0	0	0	0	0	0
AACCGGCTTAGCCCTC	ref_5770_new	59	70	73	57	72	40	84	58	89	45
TAGTTTGTAATTCCAT	ref_5770_new	15	17	18	9	14	11	28	10	19	6
CGTGATTCCGGCCGTC	ref_5770_new	0	2	2	2	1	0	0	0	1	1
CTGTTGAAGAAATGTA	ref_5770_new	13	32	20	11	23	10	19	5	30	16
ATTATCAGTGTGGGGC	ref_5770_new	9	29	14	14	21	14	14	16	20	11
GCTTCGTGAGTAGGCT	ref_5770_new	21	24	27	15	35	22	38	24	29	18
ATCATCTCTGGTCTGC	ref_5770_new	16	20	24	23	21	10	37	17	34	18
ATTAAGGGGCAATCGT	ref_5770_new	45	64	69	43	63	48	60	34	79	29
GGACGCTCTAATTGGT	ref_5770_new	0	0	0	0	0	0	0	0	0	0
TTGACGGACACCGATG	ref_5770_new	34	52	42	31	69	39	63	46	65	37
GGGTAGTGCTATGCAT	ref_5770_new	0	0	0	0	0	0	0	0	0	0
AGCGATGTTCTTATGA	ref_5770_new	0	0	0	0	0	0	0	0	0	0
GATCTTTATGATCACG	ref_5770_new	11	26	11	13	21	11	18	15	14	15
TATCATTCAGTCTCGG	ref_5770_new	0	0	0	0	0	0	0	0	0	0
TATGCGGCAGTCTAGT	ref_5770_new	0	2	0	1	4	0	1	0	0	2
CCGTTCGTGTGATTCA	ref_5770_new	0	0	0	0	0	0	0	0	0	0
TCCCACAATCTCGTAA	ref_5770_new	181	277	208	199	286	177	304	181	317	174
GGGCCCACCTCTGGCG	ref_5770_new	56	54	52	55	74	45	63	60	75	34
AGAGGCATCTAGCGAT	ref_5770_new	17	28	34	32	16	14	23	19	34	24
AAAAGCTTTGGACATG	ref_5770_new	121	163	156	131	169	107	174	120	177	123
ACCACCCCGTATAGGG	ref_5770_new	16	60	13	14	61	12	68	9	46	8
CAAAAGTTATCTTGTC	ref_5770_new	6	10	2	6	9	6	4	6	7	2
AGTGAGCACTCCGTTC	ref_5770_new	7	10	5	10	11	7	9	6	6	4
TTATCTATGTGACCAG	ref_5770_new	0	0	0	0	0	0	0	0	0	0
CGGTAAATTATGAGAG	ref_5770_new	21	10	18	11	18	15	19	14	20	14
ATTCTGGCCACCGTTT	ref_5770_new	59	60	70	55	72	37	75	53	84	46
CACCATGCTCCTCAGG	ref_5770_new	92	122	93	69	118	72	111	73	96	71
TGAATAAATCTTTGCC	ref_5770_new	117	142	124	101	158	97	136	110	159	84
CAGGGACGCACACTGG	ref_5770_new	11	14	17	14	18	14	26	7	14	18
GTCATCTGTTCCTTTT	ref_5770_new	0	0	0	0	0	0	0	0	0	0
GGGCTGCTCGCGACCG	ref_5770_new	13	16	13	20	37	21	22	24	33	17
TTTTGGTTCATACCAG	ref_5770_new	29	47	34	40	50	24	58	21	52	47
TCGGTCAGCTAAAGGG	ref_5770_new	26	33	45	39	57	34	40	28	75	19
TTGCTGTATAAGTGAG	ref_5770_new	155	198	157	182	202	133	238	143	257	100
CCTTTACGATATCGAA	ref_5770_new	6	23	11	7	19	4	27	3	21	9
TTATTGGGGACCCCGC	ref_5770_new	12	12	4	3	6	3	6	9	5	2
ACGACTCTTAAAGTCA	ref_5770_new	1	9	4	2	3	3	5	3	6	0
GATTATTGGCATGCTA	ref_5770_new	22	39	46	25	44	33	49	24	48	40
TTTCCTTCAGGACCGT	ref_5770_new	21	28	30	18	32	29	32	25	34	14
TTTGTCTACTTCCGCA	ref_5770_new	23	29	15	15	16	4	18	22	22	12
CCTGTTTTACAATTGC	ref_5770_new	5	25	8	5	24	6	32	4	33	2
AGCAGCAACTTATTAA	ref_5770_new	21	29	20	9	23	13	28	8	20	9
TCAGAAAGGGCGTGGA	ref_5770_new	10	12	12	8	12	12	10	10	15	6
AGTTCCGAATAGCCCG	ref_5770_new	20	53	26	26	34	24	45	29	52	25
TCTCGTATCCGAAATC	ref_5770_new	32	65	37	28	62	36	73	32	56	32
CGAGTCTGATATAGCA	ref_5770_new	1	2	3	3	2	2	1	1	6	0
TTCGCTTGAGACCCGT	ref_5770_new	83	121	68	88	86	99	97	66	120	64
ATATGCTTGGTATGTA	ref_5770_new	0	0	0	0	0	0	0	0	0	0
CGTCTTCGAAAAGCTA	ref_5770_new	3	2	1	2	2	0	2	3	1	1
CTACATACGTTATTCT	ref_5770_new	58	79	54	56	80	47	77	51	77	52
GGCAACTCTCATTGGA	ref_5770_new	35	58	38	33	65	38	58	29	70	31
GGTACTTGTAAAGTCC	ref_5770_new	17	28	21	13	25	21	30	20	30	17
CCAGAACGGTTTTTGT	ref_5770_new	0	0	0	0	0	0	3	0	0	0
ATTCGTTCGAGGCTGT	ref_5770_new	14	14	13	6	14	9	23	5	14	15
GTCTAAACCGATTAGC	ref_5770_new	19	46	19	21	33	12	41	18	52	22
GATCAACCTGATCTCA	ref_5770_new	0	0	0	0	0	0	0	0	0	0
AGCATAGCATCTCACT	ref_5770_new	0	0	0	0	0	0	0	0	0	0
TTTGGTGCATCGTAAT	ref_5770_new	15	19	14	11	14	9	19	12	18	19
GTGACCTACAGTTGTG	alt_5840_new	56	90	101	73	77	52	102	47	105	53
AACCCAGTCTTCCTGG	alt_5840_new	0	0	0	0	0	0	0	0	0	0
TCCGTTATCAGATATG	alt_5840_new	58	139	77	60	140	52	134	49	115	67
TGTAAGTCCTTTCGTT	alt_5840_new	0	0	0	0	0	0	0	0	0	0
CCGAGGCTTTACATGC	alt_5840_new	29	108	51	56	110	55	112	39	124	32
TCTGTCATCTCGATTC	alt_5840_new	75	111	95	64	122	69	94	72	115	63
TGTCGCCCAGCATCGT	alt_5840_new	26	35	24	27	52	14	28	26	31	24
AGACGGAATCTGGACG	alt_5840_new	78	90	75	81	127	77	112	77	132	58
AGACCCAGCTTACCCT	alt_5840_new	4	4	9	4	10	7	8	4	6	2
CACACGACTTTCTCGG	alt_5840_new	10	14	16	11	19	7	19	10	13	9
AGAGTTTGTACCATCA	alt_5840_new	17	44	30	19	44	18	42	26	50	15
AAGATTATCTATTCTT	alt_5840_new	10	15	7	19	13	8	10	5	10	8
ACTTGCGCTTCACCCG	alt_5840_new	4	18	6	6	16	13	19	7	14	5
GCTCCAGGTCCGACAG	alt_5840_new	29	44	31	15	42	32	45	15	59	24
CAAGAACATACTTTCT	alt_5840_new	16	26	24	23	29	29	36	31	29	9
ACTAATTCAGCATTGG	alt_5840_new	8	5	7	2	11	3	13	1	11	8
CAAGTAGGCGCCCACT	alt_5840_new	0	0	0	0	0	0	0	0	0	0
TAAGCCGTTCTTGTGA	alt_5840_new	0	0	0	0	0	0	0	0	0	0
ATACATTTGTTACTTG	alt_5840_new	10	11	20	8	30	9	20	7	9	8
CGCAGCCTGCTGTCAT	alt_5840_new	0	0	0	0	0	0	0	0	0	0
TTCGAAATCCGGGAGC	alt_5840_new	37	56	50	23	72	33	60	43	66	30
TATGAACGTTTTCAGG	alt_5840_new	1	3	1	2	2	3	3	2	3	1
CGCTTTTTCCCTATCC	alt_5840_new	0	0	0	0	0	0	0	0	0	0
ATGCCTCGTTGTACCC	alt_5840_new	21	33	15	6	29	17	22	14	30	4
GCGAACTGGTATGCGA	alt_5840_new	30	45	30	36	29	32	38	14	39	24
GCACGCTTGGATGTTG	alt_5840_new	0	9	8	9	4	1	11	6	10	10
TAACTCATTCAATTCT	alt_5840_new	62	97	77	75	124	63	111	64	105	65
ATATCCTCATTCCTTG	alt_5840_new	28	51	41	33	54	31	65	20	69	42
AGTCTTCGGGCCTTTT	alt_5840_new	5	11	5	2	5	1	12	4	8	6
AAAGGAATCCCATTCG	alt_5840_new	43	66	44	27	55	35	55	28	60	37
CAGACGGTAGTCTGCA	alt_5840_new	0	0	0	0	0	0	0	0	0	0
GTATGTGAGACCTTAC	alt_5840_new	7	9	6	9	6	6	11	9	13	9
CATACTGACTCTGCCC	alt_5840_new	44	74	36	28	65	43	47	38	56	30
TTCAAGCCGGGGCATT	ref_5840_new	44	82	69	48	80	50	59	43	72	39
ACCTTTACTCGGTCAT	alt_5840_new	16	25	16	15	23	12	41	10	29	12
TTCCGCTTGTCTCTCT	alt_5840_new	68	77	62	72	89	66	113	60	83	52
CGAGTTATGAGGCCGG	alt_5840_new	23	51	30	25	48	24	49	26	45	14
ACGGGTCCGGTGGGAC	alt_5840_new	15	30	19	16	33	21	39	18	45	29
TACCCTTCGCTGAGCC	alt_5840_new	15	24	28	26	42	22	37	14	26	15
AACATCGCTGTACTAT	alt_5840_new	25	20	28	24	32	15	25	15	30	12
TAGTGCTTGGATCGAC	alt_5840_new	17	28	12	13	22	24	32	11	43	10
AAACCCGGGACTGTCT	alt_5840_new	8	17	19	21	27	12	29	7	21	9
GAGTACACTTACCGTG	alt_5840_new	34	88	19	19	86	29	89	18	101	13
GTAAGGTCCTCGTCTT	alt_5840_new	36	50	48	42	50	47	60	36	71	44
ACTCGAGAGATCTCTA	alt_5840_new	35	81	51	40	75	42	71	50	78	35
GTCCTGCTTTACAGTT	alt_5840_new	78	148	110	98	155	94	140	59	131	69
ATGAAGGTACAGGCAG	alt_5840_new	14	29	22	25	32	15	18	33	20	10
GTCTGACCTTTAATTA	alt_5840_new	0	0	0	0	0	0	0	0	0	0
TGTCAAAGTAGAAAGA	alt_5840_new	0	0	0	0	0	0	0	0	0	0
CGATGCAAATACAACA	alt_5840_new	35	50	51	39	48	30	64	36	51	33
TTTATACATTTGGATA	alt_5840_new	16	23	26	11	21	14	27	10	20	7
TACCTACGCTTAGGGT	alt_5840_new	0	0	0	0	0	0	0	0	0	0
TGCTCTGATATCTATA	alt_5840_new	14	28	24	14	22	22	22	13	28	16
AATGGAACTTTCCGCA	alt_5840_new	33	39	32	24	28	30	40	23	40	27
CCGCTAAGCAATTTTT	alt_5840_new	0	0	0	0	0	0	0	0	0	0
TTTGCCGCGTTATTCC	alt_5840_new	9	22	14	17	15	12	12	18	27	16
GAAGCGTGGGTATCAT	alt_5840_new	4	3	3	1	3	6	1	3	8	2
CGGTCCTTTCTACGTC	alt_5840_new	23	42	26	26	37	20	41	24	44	32
TGTCCTCAGCTCTTGT	alt_5840_new	13	45	22	30	45	25	32	13	49	21
GGGCTTCTATCTAACT	alt_5840_new	68	75	80	69	121	48	95	62	89	67
AGACGATGCGGCATAG	alt_1612_upstream	70	39	84	67	41	54	47	57	42	57
GGCTCATTTCCCAGTA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCATATCAGTTAG	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCCCGGTTTAACT	alt_1612_upstream	50	34	64	49	27	46	37	45	43	42
GCGCCGTTTTTTCAGT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCTCGCTGCCCGG	alt_1612_upstream	486	271	566	494	302	423	301	464	320	432
AAGAGTGCGTCATCGA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
GTATCTTTTAACGCGG	alt_1612_upstream	13	14	22	21	8	16	13	13	14	22
CATACCAACAGTCGGC	alt_1612_upstream	16	25	21	28	31	24	31	29	25	29
TCTCGCCGTTGCGGGT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCCGGCTATCTTT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTGTCATCTGCCG	ref_1612_upstream	56	77	80	53	72	38	62	67	71	56
TTGTGTTGTTCCTGTC	ref_1612_upstream	232	167	343	298	170	221	154	283	177	249
ATTTTCTTTCTTTGTC	alt_1612_upstream	127	86	157	144	71	135	86	111	73	107
ACTCGCACGCTGTTAA	alt_1612_upstream	127	95	132	140	117	117	85	103	108	95
CCTAATCCTCTATTGT	alt_1612_upstream	93	410	119	113	442	95	457	105	437	75
CATCAGCGACCTATCC	alt_1612_upstream	50	48	58	58	47	43	50	73	52	36
GGTCGTCCGGCGCAGT	alt_1612_upstream	40	26	27	37	30	31	16	29	30	27
CCGATCATTACTAGGA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
CATCTCAGTTTGTCAG	alt_1612_upstream	48	18	52	45	39	51	43	44	30	44
GTATATCTAGTTTTCT	alt_1612_upstream	85	50	92	90	51	86	63	81	65	54
TAGGTGTCCTCTCACT	alt_1612_upstream	64	102	115	120	91	79	111	90	105	80
AATTCAATCAGAAAGC	alt_1612_upstream	7	12	12	7	15	4	15	3	9	15
GATTCTTACAAGGAGT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGTTCCCACCGTA	alt_1612_upstream	8	2	9	7	4	8	2	19	3	11
GTCCTATTTTTTCATA	alt_1612_upstream	30	13	32	31	21	27	12	28	18	28
GACATTTGTCTTGGAG	ref_1612_upstream	15	3	19	9	6	5	3	2	6	4
CTTTATTCATTCTCAA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTAGTATCGATTG	alt_1612_upstream	155	100	170	157	112	138	123	137	144	124
GGGTTGACCTATGCAG	alt_1612_upstream	97	58	85	76	73	52	68	69	85	63
AGGGGCGGCACGATCC	alt_1612_upstream	101	62	159	92	59	118	65	110	71	72
AATGGGATACTAAAGC	alt_1612_upstream	41	31	46	54	35	40	32	50	43	39
TTCATGGTAGGCTCTG	alt_1612_upstream	15	14	14	23	10	16	14	14	15	17
TATTAGTACGTTTCCC	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TAAATTGGTTGAGATA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTAATTTAGTCCATCG	alt_1612_upstream	65	46	99	48	54	62	47	60	55	50
TTAACGGAATTGTGTA	alt_1612_upstream	118	55	132	106	61	84	49	122	55	102
AGGGGTACCGAGTGAA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTCTATTTTTTCT	ref_1612_upstream	567	229	699	607	284	538	312	541	319	505
ACATTGCGATCCGCGA	alt_1612_upstream	85	41	96	83	48	71	67	64	58	90
CCTTTTCGGAGCTACC	alt_1612_upstream	2	7	11	6	4	3	8	6	9	3
AAAACGCTTATCAGAT	alt_1612_upstream	232	103	261	228	142	205	127	194	177	212
GCGCTTTTCTAATTTC	alt_1612_upstream	206	108	249	219	93	185	127	212	108	182
CCAGGTATGCTCCCGC	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
GCTGCGCTGATATTCT	alt_1612_upstream	59	36	71	92	41	55	51	55	45	57
TTACTCTCATTCCTGT	alt_1612_upstream	61	47	98	76	51	55	33	60	45	68
TACATTTTCTTCTATT	alt_1612_upstream	293	141	321	311	120	273	115	264	108	251
TCTCCAGAAGAGCGCA	alt_1612_upstream	2	2	4	2	1	1	0	0	2	2
CACTGGTTCAGTCGTG	alt_1612_upstream	51	48	58	57	40	52	47	49	42	43
ACCATCAACGATCGTC	alt_1612_upstream	14	17	12	12	16	18	11	14	24	15
TTTTGTACAAATTAAG	alt_1612_upstream	77	53	92	74	38	75	56	67	57	77
GATAGCCTTGTTTTGA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTGTTCGAATGCT	alt_1612_upstream	29	26	26	31	22	21	17	21	28	17
AGGATATGAACTCTCA	alt_1612_upstream	184	113	274	196	126	190	149	177	124	193
TTATAACCGTTTGTAT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTGCTTATGCCAC	alt_1612_upstream	89	66	144	107	67	64	54	90	59	79
GTCGACGGAAGATCTT	alt_1612_upstream	22	27	23	19	26	16	27	12	22	17
TTCCAGGCAATCTTCA	alt_1612_upstream	68	34	66	47	26	56	23	49	39	48
GCAGAGGTGCTGTATA	alt_1612_upstream	28	17	40	25	26	37	19	28	22	24
GGTCCTGACGCCACTC	alt_1612_upstream	37	19	62	30	20	57	37	37	24	38
AAGGAAGTTTTTTTAT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAATGATTTTAAG	alt_1612_upstream	184	114	228	207	149	163	148	182	152	164
TCTCGATGCATATAAG	alt_1612_upstream	13	3	11	15	7	8	7	11	8	9
TCTGTACGAGAACTAG	alt_1612_upstream	20	23	28	23	19	27	11	15	12	29
GATCGTCTCATATTTA	alt_1612_upstream	31	20	30	26	40	32	21	23	29	34
ACCGCTTCTGTAATCT	alt_1612_upstream	19	11	32	34	15	17	18	18	16	17
GTACACTTCACACTTC	alt_1612_upstream	12	19	18	17	22	9	21	19	25	1
GTCACACGGATGTGTT	alt_1612_upstream	7	2	7	3	1	3	2	11	4	10
GCTCCGGGAACCTTCG	alt_1612_upstream	25	17	35	30	9	22	15	29	15	26
CCGCATTTCGATCACA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCCAGACAATTAG	alt_1612_upstream	49	56	60	60	45	46	45	49	47	51
TGAGTAAATACCACAA	alt_1612_upstream	73	56	127	92	40	101	54	101	55	88
TTTATCACTCAAGCTA	alt_1612_upstream	38	17	45	36	37	34	32	37	36	33
TTTAGTCATGTATTGC	alt_1612_upstream	16	10	15	16	5	8	14	11	7	5
TGTACAATTAGAGAAG	alt_1612_upstream	1	2	0	1	0	1	0	1	1	0
AGTTTTGTTCGGCCCA	ref_1612_upstream	110	60	82	102	64	72	64	81	69	69
ATTAATCGTGTTTATA	alt_1612_upstream	44	37	74	46	38	51	35	37	49	48
ACCTCCAGGTGCAGAG	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
CCCCTAGTACCTTGCG	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TACACTCCGCTTACAT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCAGGATTGGCTG	alt_1612_upstream	77	53	94	63	51	66	53	92	61	91
GAAGTCACATAATAGT	alt_1612_upstream	13	5	19	18	9	12	7	9	6	7
GGCTCTTTACTCGTTG	alt_1612_upstream	33	22	61	33	25	47	32	30	34	50
GCTCATATGGCCCGGA	alt_1612_upstream	144	79	181	143	112	134	98	149	95	114
CGTTTCTTTCACCTGT	alt_1612_upstream	60	87	65	71	84	59	82	72	83	59
CTGACCCGGGCCCGCC	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATCAGTCATGAG	alt_1612_upstream	36	24	39	40	17	36	11	24	21	15
ATAGCTGAGTTTTCTA	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTAATGGATGTGG	alt_1612_upstream	40	27	59	45	25	53	38	37	34	34
TCCTTTAACTTGTGAG	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TAACGCTTGTAACACC	alt_1612_upstream	64	45	55	53	47	63	37	78	45	39
AGGACGCTGCGGCCTG	alt_1612_upstream	103	56	112	106	54	85	49	73	57	73
TCCCCCCGCTCGGGTT	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTAGGCTCAAGCA	alt_1612_upstream	46	24	56	50	28	51	41	45	44	45
TGTCCTTACTTTCCTG	alt_1612_upstream	16	20	18	23	6	24	8	18	3	13
CGGCTCCAATTTCATT	alt_1612_upstream	181	116	210	209	133	169	122	158	113	170
AATTGAAAACGATCTA	alt_1612_upstream	5	4	8	10	4	10	2	3	7	10
TCCTCCGGTTATGACG	alt_1612_upstream	1	3	1	3	2	1	7	1	5	5
TCGTTCGTCTCTGGGT	alt_1612_upstream	18	9	30	22	19	21	22	26	9	16
CACTAGGTACTATTCC	alt_1612_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTTTGGTTCTGCC	alt_1612_upstream	13	6	6	9	10	15	8	12	11	9
GTGTAGTAACGCCCTG	ref_964_upstream	39	34	58	31	47	32	48	32	47	25
TCGGGCTTGGGTATGC	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
CGGGGTGTGGCATTCG	ref_964_upstream	74	64	60	57	69	56	51	59	58	53
GTCTCAATAGAATATC	ref_964_upstream	57	51	62	56	51	43	65	35	56	54
CGTGACTCGGTGGATA	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTTATCCCCTCGC	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
AGCTAAGTCTTTGGTA	ref_964_upstream	55	50	56	51	44	51	50	44	68	49
GCTTATATGTGAAACG	ref_964_upstream	65	86	106	60	72	83	90	74	82	58
ATCGACTGGGCGCTTG	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
GAGTACTAATTGTGAC	ref_964_upstream	48	71	67	70	67	41	49	68	68	60
ATAGAATCACTGCGTA	ref_964_upstream	192	186	255	184	156	179	187	199	194	194
CGGCTAATGGTCTGCG	ref_964_upstream	109	107	142	109	122	108	123	104	122	105
GTTGTCTATCTCGTAA	ref_964_upstream	581	619	724	625	583	579	582	516	622	540
TGGGTTCACATGTCCT	ref_964_upstream	135	120	166	129	98	117	152	129	151	126
CTCGAAATCTGTTTTT	ref_964_upstream	118	97	110	103	98	93	91	79	112	80
GCGTTGGACCAAGCGT	ref_964_upstream	62	68	88	65	57	60	77	59	79	68
CGTTCTGTGACACACG	ref_964_upstream	45	36	44	37	41	48	54	42	59	48
GTTTGTGGATACCCCA	ref_964_upstream	79	93	72	84	105	84	104	74	93	71
ACTACCCTGTCAAGTT	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
CATTAGATTCTCCTTC	ref_964_upstream	7	6	3	12	3	7	10	7	6	7
GATGTCTATCTCGTAA	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTATCTGCAGGCG	ref_964_upstream	13	93	28	28	81	22	105	17	119	17
CGTAGTTAGTATTTGT	ref_964_upstream	135	169	165	129	123	139	179	151	161	141
GCCCAGACAAAATGCT	ref_964_upstream	17	17	20	22	23	12	16	17	18	16
ATGTCAACCAGCTAGG	ref_964_upstream	31	29	41	23	45	19	41	34	41	29
AGCTAGGTAATCGTTG	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
GAGACGTAATAAGCAT	ref_964_upstream	8	13	17	7	12	11	5	10	17	17
TGGTTAAGTTAGTTCT	ref_964_upstream	6	4	6	4	5	4	5	4	1	3
GGCACGCTCGTTTACT	ref_964_upstream	42	60	78	58	77	54	60	42	73	37
AGTTAAATATCGAATT	ref_964_upstream	138	110	171	129	111	104	156	136	120	112
CTCTGCTGCATTCAGG	ref_964_upstream	9	9	16	9	7	2	14	5	11	5
CTTCTTGGGACCGGGA	ref_964_upstream	22	10	26	13	8	16	19	13	19	15
TTTGTTTACTGTAACG	ref_964_upstream	21	11	35	22	18	18	33	17	28	20
GTGTGAATTAAGAGAA	ref_964_upstream	41	54	68	59	45	57	49	62	56	49
CAGTGCTCCAAACATT	ref_964_upstream	10	24	21	21	34	19	18	18	21	14
GCCTCGCCAGTTCGTC	ref_964_upstream	21	40	19	29	37	23	27	17	51	24
CGACCTGCCCCTGAAC	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
AACGACGTCTCCGTCT	ref_964_upstream	13	21	25	25	18	12	8	11	11	13
TTGGATGTGCTCCGGC	ref_964_upstream	64	45	70	52	36	45	56	43	53	35
ATCGGACTGGAGTCTC	ref_964_upstream	11	12	8	14	13	12	8	13	10	10
TAGCAAAGAATGCGCA	ref_964_upstream	29	21	30	20	23	27	22	28	24	39
TTTCTTGGACCGAAGG	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGGTGATTCTTGT	ref_964_upstream	117	132	186	159	151	126	140	138	133	127
CGGGCCTGGGTAACAG	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
CGAGGTGCTACGTCTT	ref_964_upstream	54	50	74	49	75	71	68	38	60	61
TATAGATGCGGTGGTT	ref_964_upstream	44	45	62	81	43	50	47	52	45	65
AGCCCACACGAATCTA	ref_964_upstream	32	39	35	32	37	28	54	36	44	31
GACGAATGCCGTCTTG	ref_964_upstream	39	37	43	29	36	28	38	28	39	36
TTTTAACACCCCGGGA	ref_964_upstream	7	12	13	17	11	12	13	6	16	3
CTTTATTATAAAGTCA	ref_964_upstream	17	18	20	18	24	14	14	23	19	15
ATTTTTGAGGTGCGGC	ref_964_upstream	11	7	5	8	12	4	7	9	12	4
TATCTACCACTGCGCA	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGCTTGAGATCAA	ref_964_upstream	12	14	11	16	11	9	19	16	15	16
ATTTTTATTAGGAATC	ref_964_upstream	11	10	17	9	10	8	7	4	11	10
CCATGGCACCGGAACG	ref_964_upstream	84	93	110	94	70	110	67	73	89	87
TCGTGTTGACTTACTA	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGTCCTGTAGGT	ref_964_upstream	115	130	122	124	150	106	129	108	112	97
TTGGCTTAATCCAAGC	ref_964_upstream	63	62	67	84	65	57	58	44	51	52
TGTGCATTCAAGAGCA	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
TGACAACGGTTCATAC	ref_964_upstream	7	17	10	11	12	13	17	13	16	9
GCTGCCATGACATGTT	ref_964_upstream	5	5	11	5	8	6	6	5	4	5
CTTAGGAAAATCAGAG	ref_964_upstream	7	9	14	12	14	8	7	5	14	9
TGAAGAACCATGGACC	ref_964_upstream	0	0	0	0	0	0	0	0	0	0
GGGCAACTTCTCCTTT	ref_964_upstream	96	110	123	101	100	105	91	89	85	86
TCCTAAAGGTTTGAAA	alt_6073_new	29	52	31	29	72	27	57	25	65	25
GAGTTCCTGGTCCCAG	alt_6073_new	19	44	30	35	53	12	57	27	54	20
TTTCATAGCGTGCTTG	alt_6073_new	0	0	0	0	0	0	0	0	0	0
GAGAGTTCTCTCCGGT	alt_6073_new	68	122	81	58	103	73	102	35	131	52
TATGTGATGCTGCCGT	alt_6073_new	14	34	19	17	29	14	38	20	21	11
CGTGGACTCACCTTCT	alt_6073_new	6	13	7	7	23	3	25	3	14	6
TACCGCTTGGTGTCTC	alt_6073_new	0	0	0	0	0	0	0	0	0	0
GTATCAGCCGGGTTTC	alt_6073_new	0	0	0	0	0	0	0	0	0	0
ACTCAGCTTCTATCTG	alt_6073_new	2	16	7	4	12	4	16	5	18	8
GATATCTCTCAGCGAT	alt_6073_new	53	94	88	66	111	46	100	69	119	60
TGCCGTGGACCCTAGC	alt_6073_new	14	22	15	15	34	9	28	21	25	14
TAATGGTTGGTGGGCA	alt_6073_new	9	6	3	12	19	4	9	2	16	9
TGTAGATAAGGCTTAA	alt_6073_new	9	24	21	28	22	17	18	6	27	8
AGATAAAACCTATTAT	alt_6073_new	7	14	14	10	19	15	17	12	18	12
AAACGACGTGGTTACG	alt_6073_new	0	0	0	0	0	0	0	0	0	0
AAAGGGTTTCCGTTAC	alt_6073_new	0	3	2	3	2	2	0	4	4	1
GTCCAGCTTACTCCCG	alt_6073_new	3	7	4	2	12	0	8	1	9	0
AGCAACTACGGGTCTG	alt_6073_new	45	91	42	39	94	29	85	33	78	43
TCTCCTCTATGTAGCT	alt_6073_new	0	0	0	0	0	0	0	0	0	0
ATATGCTTGCCGTATT	alt_6073_new	26	63	39	36	57	29	60	27	59	28
AACGTAGGCATTGCAT	alt_6073_new	0	0	0	2	0	0	1	0	0	0
CTGTTTTGGAATTGCT	alt_6073_new	22	51	33	27	47	28	66	23	41	25
CTGGTACGTGGTGGTG	alt_6073_new	43	61	77	42	94	39	69	44	95	31
CTCAGACGCATATCGA	ref_6073_new	25	28	19	17	21	14	31	8	38	15
ACGACCGCAACAATTA	ref_6073_new	0	0	0	0	0	0	0	0	0	0
CACCAGCTATATGGCT	alt_6073_new	12	17	10	16	33	12	27	14	18	11
ACCCTAGATGGTTTTT	alt_6073_new	44	67	58	40	63	38	87	33	85	49
CCTTCCGCCCAGGCAC	alt_6073_new	0	0	0	0	0	0	0	0	0	0
CGGTGTTACTCCCATG	alt_6073_new	28	58	25	27	59	28	69	35	72	27
AGTCGTCGTTTATTTC	alt_6073_new	16	24	25	22	28	21	29	11	19	11
GGTCGCTTCCGTCCCC	alt_6073_new	14	45	9	14	52	9	57	11	53	11
TTTCTATAGGTTGGCG	alt_6073_new	12	13	24	15	15	12	21	14	16	8
CCATTTAAAGGATTCA	alt_6073_new	13	18	13	9	26	11	17	12	26	11
TCCTAATCATTCGTGT	alt_6073_new	24	56	39	40	79	45	71	34	85	30
CTTCCGTTCTGGCCGA	alt_6073_new	7	12	9	4	3	13	11	0	8	4
CACTTTACATCATATC	alt_6073_new	36	47	24	35	48	24	55	30	53	35
ATGTCGATGACCGTTG	alt_6073_new	9	14	16	8	18	12	20	9	13	9
TTATTAGGCGTGTGTT	alt_6073_new	2	7	1	0	3	0	2	0	6	0
TTATCACTAAACAATC	alt_6073_new	6	2	1	3	5	6	3	2	7	1
ATGGATAAAAGGTGAG	alt_6073_new	13	32	26	15	19	17	23	10	22	9
GTAACTCTGGGTGGTA	alt_6073_new	11	20	19	11	22	14	21	16	23	11
AAGCCGGCTTATGCCG	ref_6073_new	74	91	88	77	81	73	77	65	70	76
ACTTAAGTGCTTGTGT	alt_6073_new	0	0	0	0	0	0	0	0	0	0
GATTATACCTTACGCA	alt_6073_new	0	0	0	0	0	0	0	0	0	0
CTTGATCAGAGCACCC	alt_6073_new	18	40	25	27	30	10	32	28	58	18
TCTTTTGTATATACAG	alt_6073_new	18	22	17	18	36	18	28	19	39	24
CGTGCCATTAAGACTA	alt_6073_new	106	172	128	107	186	87	172	86	174	84
AAGGACAGGTAATTAC	alt_6073_new	13	23	27	12	15	16	42	14	22	17
TTGTGTCACATACGGC	alt_6073_new	0	0	0	0	0	0	0	0	0	0
GTTTCGGGCTCGTCCC	alt_6073_new	3	11	1	1	8	5	7	0	2	6
TTTATGTATAGAAGGA	alt_6073_new	2	3	10	3	1	3	6	6	5	2
GCGTTTTTTTTGCCAC	alt_6073_new	0	0	0	0	0	0	0	0	0	0
AAGGTTCGATAGCACG	alt_6073_new	6	11	8	7	7	4	10	1	14	6
GTTTAGTCGAACTACC	alt_6073_new	27	54	23	18	30	24	46	15	51	15
GTTCTCCGACTATAGC	alt_6073_new	35	69	44	43	52	32	59	36	67	34
CGGTGCCGTCGTCTTG	alt_6073_new	0	0	0	0	0	0	0	0	0	0
ATCGCAGGCACTACCT	alt_6073_new	60	78	85	50	100	65	84	56	97	60
AGCCTTCATTAGACTT	alt_6073_new	19	30	30	25	48	20	23	28	34	23
TCTGCTTGGGATATTG	alt_6073_new	0	0	0	0	0	0	0	0	0	0
GATTCCCATCTTTTCA	alt_6073_new	34	45	44	42	54	44	54	36	67	29
GAAGATCTCTCTTCTG	alt_6073_new	10	24	20	7	21	12	23	14	22	18
CATTCGTGTTATTACC	ref_6073_new	94	158	107	101	141	100	161	61	174	77
CTTATATTCACCGAGT	alt_6073_new	114	193	102	121	190	122	212	97	195	106
AGCGGGATCGATGAAT	alt_6073_new	25	49	34	22	37	26	31	27	41	26
AAGCCTTTGAAGGCGG	alt_6073_new	19	29	15	33	26	18	29	23	28	18
AAAACTTCAGAATAGT	alt_6073_new	3	3	2	0	0	1	1	1	2	3
CTAAGGGCGATATTTT	alt_6073_new	10	10	10	12	15	6	21	4	8	2
CTTCCGGCTATTGACC	alt_6073_new	49	81	43	29	91	39	82	32	89	27
ATACCGTCCTGCATTT	alt_6073_new	13	22	18	15	30	18	24	26	42	21
TTGTACTCGTCGAGGT	ref_2374_fdr	12	27	11	15	32	10	18	15	16	16
TCCGCAAGTTCATGTT	ref_2374_fdr	43	54	42	28	64	42	41	30	51	29
AACGATTCGCCCCTCC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
GATCATCTCCCGATTC	ref_2374_fdr	7	6	11	10	19	10	8	4	9	5
TCGCCGCTATCTGCGT	ref_2374_fdr	248	333	294	242	339	251	337	213	388	191
AACTCCGGACATGCTT	ref_2374_fdr	12	20	15	5	15	12	20	3	20	8
ATTCCGCATCCTAGGT	ref_2374_fdr	53	60	52	53	71	47	79	42	84	42
GCATGTGGTCACGAAG	ref_2374_fdr	60	67	68	56	69	55	82	51	77	54
CAAAATTGGTCGACGC	ref_2374_fdr	133	181	136	108	179	107	180	109	249	100
GAAGGGGCTGTTTGGT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGCCTTCCAAGCG	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TAAACTTGGAATATCT	ref_2374_fdr	2	4	4	4	4	2	2	3	2	1
TTGTACCCTCGAAATT	ref_2374_fdr	4	5	2	3	2	4	5	0	2	5
TAGAGCGCTCTATGGG	ref_2374_fdr	17	24	24	24	27	25	22	16	28	20
TGATATGGACGCTTCC	ref_2374_fdr	9	6	5	12	17	7	13	6	20	8
TTACCCCTCTGTGTAA	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
CAATCGTTGGGACTTG	ref_2374_fdr	15	17	21	10	24	16	18	7	22	20
TTCGCCCAGGCTCGTT	ref_2374_fdr	37	87	71	70	95	62	74	57	86	58
CGAACACGTCCTTACG	ref_2374_fdr	69	106	79	63	91	71	99	81	111	61
TATCTCCGGGCAGAAC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TACAGAGTCTTAATCC	ref_2374_fdr	0	0	0	0	1	1	0	2	1	1
GCAAAGTAATCCGCCA	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTAGGCTCGGTGG	ref_2374_fdr	36	63	53	50	39	26	52	25	64	31
AGCCGTCTTGGACCAA	ref_2374_fdr	4	13	5	7	13	2	10	9	5	2
CCTGCCGATGTTTGGC	ref_2374_fdr	1	33	3	8	34	5	32	6	47	5
GGAAAGACTGGAATTG	ref_2374_fdr	16	56	50	31	40	32	52	42	58	39
GATGGGGTAATTCAAA	ref_2374_fdr	30	24	23	23	20	17	18	11	27	14
TAGAGAGCCATTGGTT	ref_2374_fdr	23	54	24	23	50	22	41	28	38	24
CTACTGGTAATGTGAC	ref_2374_fdr	8	10	24	14	19	12	18	12	17	11
CTTCCCGACATGATTT	ref_2374_fdr	27	74	32	24	52	32	72	36	68	16
TAGGTCCAAAAAAGCG	ref_2374_fdr	35	35	32	18	36	29	36	29	37	33
AGACTCGTCAATATCG	ref_2374_fdr	15	21	19	29	22	21	29	16	21	13
CGAATGTAGTATACAC	ref_2374_fdr	14	13	25	15	27	7	20	12	26	13
TGGGCAGAGGATCTCC	ref_2374_fdr	1	2	2	2	0	2	1	1	0	0
GCAGATACGTATAGTC	ref_2374_fdr	33	42	76	48	43	53	59	41	58	38
GTGCTCCGTCGTAGTG	ref_2374_fdr	58	67	55	55	77	63	78	50	80	55
TTGGGATTTTTAGCGT	ref_2374_fdr	92	109	91	84	108	90	121	89	98	63
AATCAGGCTTGGACCG	ref_2374_fdr	167	212	211	194	212	148	225	162	239	176
AGCAGAACACGAATCG	ref_2374_fdr	4	9	8	7	11	6	13	5	8	9
CTATGCTGGATCTGGA	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
CTTGTGTTACGACTAG	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTTGATTTTATT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTTCGGGCATTCT	ref_2374_fdr	15	22	25	16	12	5	12	8	15	13
TATAAGCTCCACACGC	ref_2374_fdr	32	58	53	30	42	29	66	28	42	28
TACGGTACTGCTTTCT	ref_2374_fdr	39	44	40	40	57	29	49	45	62	27
AGCACATAGAAAAACA	ref_2374_fdr	53	53	77	44	56	46	73	48	60	62
GCACAATGCTACCTGG	ref_2374_fdr	209	337	236	224	337	188	323	216	325	207
GTATTATCGTTGATAC	ref_2374_fdr	45	64	47	44	77	40	54	44	74	38
AACGAGTTGCCCAGCG	ref_2374_fdr	13	13	4	6	13	8	10	9	12	8
TCTTGTGACTTCCAAA	ref_2374_fdr	46	60	62	38	51	35	62	54	53	55
GTCTCCGGGGGCTTCT	ref_2374_fdr	26	40	34	40	46	28	41	20	69	27
CTCCGCAACTAACCTA	ref_2374_fdr	7	19	6	18	12	12	16	10	10	5
TTAAATTTTCTTCCTT	ref_2374_fdr	46	45	40	26	31	26	41	37	40	31
TAGGTGCGCGCACACC	ref_2374_fdr	9	8	15	21	12	6	13	13	16	5
TCTTTTGAGCCATGCG	ref_2374_fdr	2	4	2	3	4	3	2	2	6	3
GTGGAGGTCTAGCAAC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TTATATCTAACCCGGT	ref_2374_fdr	91	129	91	63	151	71	116	78	142	74
ATAGTGCCTACCTTAG	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGATTTCGAAGAT	ref_2374_fdr	45	56	41	50	55	54	75	40	64	51
CATGCGCGAGTGCTTC	ref_2374_fdr	2	0	0	1	1	2	2	0	3	0
CACTACCGTTACGCTG	ref_2374_fdr	66	101	91	77	76	92	80	74	95	64
CCCGAGTAATACACTT	ref_2374_fdr	60	110	97	86	109	73	142	58	138	65
CCACAACTCCTTCAAT	ref_2374_fdr	99	135	138	104	167	107	165	118	156	97
CAGTCATTGTATATTT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTAGAGCCGTGAG	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
ACTGAGGTCTATTCAT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
GGGATTTGGCCTACGC	ref_2374_fdr	20	24	19	18	27	23	20	13	26	9
TTGCTCTCTTCAGTTG	ref_2374_fdr	1	7	9	4	9	6	10	7	6	7
CTATGTAGTACCTATC	ref_2374_fdr	0	2	0	1	0	1	1	0	3	1
TCCAGATGGTTGACAG	ref_2374_fdr	2	7	4	6	7	3	5	8	5	4
TGACTTGCACGCCACA	ref_2374_fdr	151	166	192	142	193	149	213	134	200	152
TTAGGGTACATGGCAC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
GCGTGTATTCGGTGCG	ref_2374_fdr	3	2	5	3	4	1	6	2	5	2
CGTTCGCTGTCTCGAT	ref_2374_fdr	22	32	25	27	32	7	20	15	26	16
TGAATAGTGATATGGT	ref_2374_fdr	48	67	47	49	74	46	66	54	71	40
CATACATACTCCTGCA	ref_2374_fdr	19	22	13	7	19	14	17	14	18	7
TGGTTTTTGGAGATTT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
GAGAAAGAGTGAAGGA	ref_2374_fdr	10	21	17	12	16	19	11	9	14	8
TGGGAATAGTTGAGAT	ref_2374_fdr	58	75	85	56	78	75	82	73	81	65
AGGGCATGTTGATGAT	ref_2374_fdr	10	10	12	3	14	5	3	8	12	1
GGCCTGATCTTTTTCG	ref_2374_fdr	20	12	12	11	10	9	18	5	16	10
TGCATAGGCATATCCG	ref_2374_fdr	0	3	3	3	2	2	4	5	1	3
GTATCGATACTGAACA	ref_2374_fdr	40	42	52	38	59	31	44	36	49	35
TGAAAGCTCATGTAAT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
GTTACGGCACAGTCCA	ref_2374_fdr	92	102	111	88	116	93	104	91	129	75
CCCATTATACCCCTTG	ref_2374_fdr	1	6	3	1	3	1	6	1	6	0
TACAGTTTTCGAGTAG	ref_2374_fdr	9	11	5	6	8	6	10	3	11	5
CTCGGGTGGTCGTCTT	ref_2374_fdr	27	26	39	40	37	26	38	25	32	22
TTCATTGGGGAGTCCC	ref_2374_fdr	51	74	60	48	67	45	58	46	79	49
CGCCGGGCTAAGGATC	ref_2374_fdr	13	20	19	9	13	10	23	13	20	7
GGTTTCTTCTACCAGT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTGCGGTCTGCCC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
CGTGCAAGATTACAAA	ref_2374_fdr	10	15	11	10	17	9	13	11	16	6
GAAATCATTCCGTCTC	ref_2374_fdr	37	51	54	57	41	27	55	26	30	37
GTCAGCCAATCGGCGA	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TCAGCATATCAGTTGG	ref_2374_fdr	32	61	20	22	54	33	59	15	60	25
CATATCGGGTATGGGC	ref_2374_fdr	24	50	27	35	46	39	44	25	55	28
GCCCAGGAATGAAGGA	ref_2374_fdr	37	42	38	39	38	36	47	37	38	24
GCCCACGATTTAGCTA	ref_2374_fdr	32	32	41	40	30	26	61	34	52	32
GCATTTGTAGCATCTA	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
ACCAACTTGCGAATCA	ref_2374_fdr	3	17	8	4	10	3	12	3	16	4
TATAATCCTATTAGAT	ref_2374_fdr	23	31	63	37	25	23	42	11	44	14
CCCGGAACGTTTCGTA	ref_2374_fdr	8	8	9	12	9	6	12	14	7	5
ACGTAGCATTCAATGC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
CACATCCCAGCGCGGC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
GGCAATTTCTCGTTTC	ref_2374_fdr	83	69	77	63	79	72	70	71	69	74
TAATCAATCTCTTTTT	ref_2374_fdr	33	38	46	44	46	36	46	42	59	33
TATCCCAGGTTCGATA	ref_2374_fdr	23	30	28	24	21	21	37	28	26	15
CTAGTTTGACAGCAGC	ref_2374_fdr	42	42	27	21	65	42	59	39	52	30
TGGCGGTACCGATTCG	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
AGCGGGCGCTCGCTTG	ref_2374_fdr	9	14	5	6	9	12	17	4	11	6
TACTTTATGGATAAGT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCCGGTGGGACC	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
TCATAAAGTGATTATT	ref_2374_fdr	42	68	57	57	75	58	94	50	75	49
TATAACCGGTCGCAAT	ref_2374_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTAGTTAAGACGG	ref_2374_fdr	5	7	5	3	3	6	4	0	4	2
GGAAGTTCTGCCACTA	ref_2374_fdr	28	34	24	15	29	18	23	24	29	20
ATCTTCAAATCGGCCA	ref_2374_fdr	6	11	9	12	8	7	6	6	3	7
AGGCTTGCCTTCAGGA	alt_5486_RC	11	26	19	22	15	11	26	30	26	20
GTTGCTTGATTCCGTG	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
GTAAATCCGCCTCCTT	alt_5486_RC	10	11	9	6	9	11	9	6	6	11
CTACATGAGTGCTTTT	alt_5486_RC	95	126	106	80	111	67	128	78	119	76
GTTAGACGCACCCTAT	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
CCCATCCGTACATGCA	alt_5486_RC	6	6	7	6	11	5	8	9	14	5
TTCATTAAGTGATTGC	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
CCGTCTCCCGTCTCGA	alt_5486_RC	2	4	4	4	9	3	8	2	12	2
TTTGCCGATCCGCAGT	alt_5486_RC	40	38	50	45	45	44	44	30	40	40
TATCAATGTATGCGCA	alt_5486_RC	20	31	44	24	26	25	33	28	20	28
AATTTCAACCATCCAG	alt_5486_RC	2	1	4	3	9	3	8	3	3	2
GTTAAAGGCACGAGCT	alt_5486_RC	41	45	34	29	38	22	33	35	40	39
GGCCCAGTTGCGGTTC	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
CATCCGATCATGGGCC	alt_5486_RC	6	5	6	5	5	5	6	8	8	4
TGTTAAGTCATCATCT	alt_5486_RC	108	87	91	110	91	86	105	67	105	86
ACTGGTTTTTCGCTCG	alt_5486_RC	128	152	133	135	138	133	162	106	170	98
TGTCCGACAGTAACAT	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
TATACGGCGACGGGCA	alt_5486_RC	16	21	37	33	21	18	21	21	24	29
TAGCCAAGGCCGACAA	alt_5486_RC	35	46	48	49	35	35	54	32	38	22
TCAGCTTCTCGCTCTA	alt_5486_RC	94	113	111	95	110	85	114	92	107	64
GGTCCCGTAGTTGTTG	alt_5486_RC	83	65	98	85	101	52	106	69	98	64
TCCATTATGCGGGTCT	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
ACGTAGATTGTCACTG	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
TATGCCCCGGATATTT	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
ATGTTAGGTCCGTTTG	alt_5486_RC	67	66	80	68	78	60	72	73	77	58
CCGATGCGTCAACTAT	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
CCAGAGGCCCTCTAAC	alt_5486_RC	9	20	4	9	12	3	11	14	24	3
TTTGTGCTTAGATACT	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
TTCAGCGGGTTAGCCA	alt_5486_RC	27	42	48	29	28	35	54	34	58	33
TATGTGTCTTTCTGAA	alt_5486_RC	23	28	27	25	27	22	26	19	30	23
AATTTATGAATTTTTG	alt_5486_RC	0	0	0	0	0	0	0	0	0	0
AACGCACTTGCCTCCG	alt_5486_RC	98	110	106	93	88	87	127	95	114	89
GCTTGGCCCTGAACTA	alt_5486_RC	88	123	109	102	113	95	131	100	110	100
AAGATATGAACTTCAC	alt_5486_RC	198	205	251	208	202	190	220	195	225	180
AGTTCGGACCACATCC	alt_5486_RC	92	108	119	63	103	80	109	76	150	69
ATGACGCGGTCTAGGT	alt_5486_RC	98	104	85	95	95	89	95	86	111	83
TTGTTTATAGGAATGA	alt_5486_RC	55	54	66	60	72	55	66	43	57	49
GCTATGTACGTCTTTT	alt_158_upstream	78	42	88	96	54	80	52	78	45	94
GTTCCCCTTTTCGCCC	alt_158_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTACAGTAGGCG	alt_158_upstream	566	252	638	543	266	506	265	597	305	485
TAGGGGACACCGTCGT	alt_158_upstream	9	6	10	10	3	8	3	12	1	8
CCGTTACTTCGATTTA	alt_158_upstream	39	30	39	43	16	40	23	33	20	30
TTTCCGTCCCTTCACC	alt_158_upstream	0	0	0	0	0	0	0	0	0	0
AGGATGCATGTTGCTT	alt_158_upstream	17	10	20	13	6	8	4	17	6	10
CAGGATGTTCTGTTCG	alt_158_upstream	153	94	201	163	81	143	70	153	68	150
CTTTGGCGACTCCTGG	alt_158_upstream	68	33	75	87	42	59	29	57	29	54
GCTCTAGCGGGACAGG	alt_158_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTATTAAGTTCTC	alt_158_upstream	40	15	40	34	15	25	13	27	21	39
AGCGCTCGTAGCGGCA	alt_158_upstream	126	58	157	123	65	110	59	112	60	97
ATGCCTCGCATCAAGA	alt_158_upstream	68	26	77	64	41	64	26	64	33	52
TCCTGCTGACAACCCC	alt_158_upstream	62	40	73	97	28	82	32	57	36	51
CTAGGCGAATGTATTT	alt_158_upstream	21	4	19	15	9	8	9	20	11	15
GTCCAATCTCGTTAAA	alt_158_upstream	24	16	32	27	11	27	15	27	21	27
CTCTCGGGCCAGCTTT	alt_158_upstream	0	0	0	0	0	0	0	0	0	0
ATCCATGCTTAATTGA	alt_158_upstream	28	17	35	29	14	18	19	19	10	10
GTTCCATCGTCCCACA	alt_158_upstream	0	0	0	0	0	0	0	0	0	0
TTAAAGTACGTTCTTC	alt_158_upstream	258	109	362	287	117	263	147	248	142	211
GTATGCTTGACGCTAG	alt_158_upstream	40	29	37	42	20	50	25	30	22	32
TCATATAGGTTAAATG	alt_158_upstream	297	132	327	308	135	236	117	262	116	212
GGTTTGCTTGAGTTTA	alt_158_upstream	37	14	60	44	18	47	18	44	23	45
TAGAGCACCTGAACTT	alt_158_upstream	81	38	123	95	46	90	52	100	52	83
AGACTGCCTTATTCTT	alt_158_upstream	65	17	70	60	18	51	22	48	26	61
GCAGGTTTCCGGGGCG	alt_158_upstream	81	38	109	89	25	66	49	76	42	78
GAACTCGCCATTCTCC	alt_158_upstream	39	15	48	48	15	48	14	42	20	35
TTAGTCTGAATTACGA	alt_158_upstream	137	73	214	142	56	157	84	98	87	97
TGGTATCTACTTCTGC	alt_158_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGATTGGGTTTGT	alt_158_upstream	6	0	9	8	0	7	0	4	3	3
GATTAAGGCGTTACTT	alt_158_RC	112	22	123	128	28	102	32	83	32	78
GATCTAGGCAAGCAAG	alt_158_RC	65	30	88	64	32	71	17	55	33	56
AGCTCTGATTTCGGGT	alt_158_RC	76	25	80	64	16	44	20	58	15	46
TCCGAGGATGGAATTT	alt_158_RC	19	8	28	20	13	12	7	16	6	10
AGTCCAAGTATTATGG	alt_158_RC	54	22	72	57	22	36	22	49	15	67
CACCGTCCCGAGTCCG	alt_158_RC	58	22	76	70	23	61	27	40	22	50
TACTGCGGCCATATGG	alt_158_RC	317	100	381	323	118	305	83	274	102	235
ACATGTAGCAAGAGAC	alt_158_RC	0	0	0	0	0	0	0	0	0	0
CAACTCATTCCACTGG	alt_158_RC	35	11	33	37	11	22	17	32	12	21
CTGTTTTGTACACTCC	alt_158_RC	3	26	7	9	23	6	35	3	25	4
TATCCCATAGGCGTAA	alt_158_RC	36	9	34	48	5	30	9	28	5	22
CAGGTGTTTATGCGAT	alt_158_RC	0	0	0	0	0	0	0	0	0	0
CATTATTACCTTTCAT	alt_158_RC	0	0	0	0	0	0	0	0	0	0
TTCCCTTTCCAGCCCC	alt_158_RC	103	35	100	99	32	69	28	89	16	81
AGCTGGGAGTGTACAG	alt_158_RC	43	5	51	49	8	26	19	37	14	33
GACGTGGCCGGCCACA	alt_158_RC	466	142	642	592	153	492	175	496	142	455
TCCTTGTTTACCGGGT	alt_158_RC	84	31	118	107	20	104	36	86	34	99
TTAGTCCGATCTGTCA	alt_158_RC	237	71	275	227	75	172	80	222	71	211
AGTCTTGGCCCAATAC	alt_158_RC	29	24	31	30	20	27	20	28	19	28
CGGTTCAGTCGGCCGT	alt_158_RC	150	21	185	147	44	148	37	125	39	135
ATTCTTTTTTCTCTAC	alt_158_RC	0	0	0	0	0	0	0	0	0	0
CTCCAGGCACTACAGG	alt_158_RC	64	25	69	72	33	63	30	51	36	42
TCATAGGGGTATCGGC	alt_158_RC	89	36	91	73	38	81	33	67	29	59
GCTCACAAGGGCTGAG	alt_158_RC	2	4	3	3	1	6	1	4	1	3
TCATATGTCATAAGCT	alt_158_RC	86	22	122	87	22	87	38	90	22	82
CATTGTACGAGAGCTG	alt_158_RC	105	29	114	114	43	99	34	101	44	80
CGATCGAGTCTGAGGC	alt_158_RC	0	0	0	0	0	0	0	0	0	0
GTTGTGGATACGCGCG	alt_158_RC	38	10	44	47	11	41	11	43	11	27
CTGCGTCTAGTGACCA	alt_158_RC	0	0	0	0	0	0	0	0	0	0
TTTCGGCTAACACAAA	alt_158_RC	94	25	96	101	31	92	30	78	16	89
CTCAGAGCACGAATGT	alt_158_RC	0	0	0	0	0	0	0	0	0	0
CGAAATATGTGGCGGG	alt_158_RC	44	13	48	33	8	30	16	38	7	33
GCGTGGGTCGTGTTTT	alt_158_RC	11	14	16	12	11	10	5	15	6	19
CGCTCGACTGGATGGG	alt_158_RC	71	31	72	61	10	61	18	70	32	52
TACGTTCGGGATCAGT	alt_158_RC	0	0	0	0	0	0	0	0	0	0
AATAGCCCGTAAAATT	alt_158_RC	213	58	251	194	74	203	57	179	62	187
CGTAAGTGTGGCGGGT	alt_158_RC	63	23	79	79	20	68	17	70	13	71
GCATACACTATTCGTG	alt_158_RC	87	26	114	114	27	65	27	94	33	66
GTACAACGCCGACCAT	alt_158_RC	21	9	27	29	19	18	13	23	12	17
AAAGGCCTTCCAGGTG	alt_158_RC	47	19	60	39	19	28	18	49	6	43
TTTATCCTTTTTAGTA	alt_158_RC	0	0	0	0	0	0	0	0	0	0
CACAGGCCTCCTTACG	alt_158_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTGACTATCCTC	alt_158_RC	234	77	288	232	69	228	101	198	87	195
TGTTTGAAACATGTGT	alt_158_RC	0	0	0	0	0	0	0	0	0	0
TCGTGCTCGCCTTTGA	alt_158_RC	129	32	117	145	35	131	39	135	47	115
TATATGTTTGGGTTAC	alt_158_RC	64	23	104	68	32	59	28	63	32	66
CCGGCAAGCAGAAACC	alt_158_RC	0	0	0	0	0	0	0	0	0	0
ACCCATGATTAGTTCC	ref_5896_new	29	42	31	32	37	20	33	31	42	21
CGTATCAGGTTAGACT	ref_5896_new	6	25	18	7	16	9	25	7	15	5
CATACGCTATTGTCCT	ref_5896_new	2	8	4	8	4	3	13	5	6	3
AGTGAGACAATGTCTA	ref_5896_new	1	6	0	2	8	6	5	0	6	0
TTGGGGGCATTTACCT	ref_5896_new	30	59	41	35	47	43	53	27	59	20
CATCCTATACCGTTGG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
GACTCACCATCCCGGA	ref_5896_new	0	0	2	1	3	1	2	3	0	0
GGCACAGATGGTTGTC	ref_5896_new	133	202	157	139	177	121	208	126	229	109
TGCACAGATGGTTGTC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
GCTAGTAGTTGTCTCG	ref_5896_new	7	21	19	4	18	6	26	13	25	12
TCCGTTTGAGAACAGT	ref_5896_new	4	5	3	2	5	0	9	4	9	2
AATCGAGTTGGACAGG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
GGGGTATAACGATTCT	ref_5896_new	50	18	77	71	16	53	24	73	26	49
CAACACAAGCGTACAT	ref_5896_new	15	43	29	21	30	27	41	27	47	22
TTTTCAGCGGTATTTA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
GTTCCCGAATTAGTGC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CACCGACTTCGCTAGT	ref_5896_new	20	32	12	19	25	16	24	16	36	16
CCCAGGGTCTAGAACA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CTCACCCTCGGCCCTC	ref_5896_new	6	18	7	11	10	13	21	8	14	8
TGTCACTGCTCTTAGC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CGTTGTGTGATGTGGC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TGCGGGATAACGAAAG	ref_5896_new	8	22	19	11	14	7	8	16	23	8
TATCAAGCATCCGTGC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CTTTAACAGCCACCAA	ref_5896_new	1	3	2	2	6	0	9	1	2	1
TACAGCGCTCGCAAGT	ref_5896_new	2	2	1	1	3	3	4	0	0	0
TCCGGGTGGCACCATA	ref_5896_new	74	128	102	80	109	87	129	65	137	69
ATTCTTCCTTCGGTTA	ref_5896_new	53	69	55	50	72	60	82	39	75	42
ACCCTGGGGATCCACT	ref_5896_new	3	7	10	0	7	9	4	3	5	2
GCCTATTAGGCATTTG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CTCCGGACAGACAGCA	ref_5896_new	55	84	69	69	92	50	92	37	108	59
AAGGAGAGTTGGCTAG	ref_5896_new	175	286	198	171	277	145	321	160	285	154
TCTGCCTATCGACGCG	ref_5896_new	2	15	16	7	19	7	12	8	6	5
CGCACATCATGCTTCA	ref_5896_new	17	22	22	18	21	16	28	14	27	13
TACAGGCAATTGAATA	ref_5896_new	58	64	62	42	84	46	88	50	82	42
ATTGCGAACTCGGGCT	ref_5896_new	64	66	88	71	89	65	102	72	107	47
TATGTAGACATGGCCA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CTCTCTATGATTATTG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TGTCCAGCCCCGGTAC	ref_5896_new	6	11	12	7	10	12	10	9	11	2
CCCGGCCTATATAACC	ref_5896_new	4	37	6	2	48	5	35	6	53	4
GCGGCAAATAAAGCCT	ref_5896_new	12	19	16	17	31	26	29	14	15	8
CTATTTTCTTTTGCTA	ref_5896_new	8	16	9	10	16	13	11	10	11	9
TGGTCTGTTTTGTCAA	ref_5896_new	19	34	44	30	51	34	48	21	51	23
GGTTACCAGGCCATTG	ref_5896_new	10	9	9	13	11	12	7	3	14	5
GCCCAACATGGTGTCT	ref_5896_new	0	0	0	0	0	0	0	0	0	0
ATATGTTCGGGTTTAT	ref_5896_new	3	4	8	6	7	11	5	9	7	4
GTATATCTACGATTAT	ref_5896_new	5	11	8	4	3	3	7	4	6	9
TGACAGTACCGCAGTG	ref_5896_new	2	19	15	6	19	11	18	8	22	8
CTGGTTATCCTTGTCT	ref_5896_new	12	34	12	2	28	3	30	4	17	1
TAGGTCAGGGCGCTTT	ref_5896_new	33	45	27	32	50	46	39	34	40	21
TTTGTTGGATACGCAC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
ACCGGTTCTAGGGCTA	ref_5896_new	2	19	3	4	31	3	24	3	27	5
TTGGTGTCACATCTAG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
ACGTAGTGTATATGAG	ref_5896_new	10	13	11	7	18	9	24	3	12	9
GTTCCATTCAAGCGGT	ref_5896_new	3	7	4	3	3	4	4	5	4	2
CCGACGCTCTACCTTG	ref_5896_new	8	7	3	4	12	4	13	9	13	4
GACGCGTTACCGAGGT	ref_5896_new	0	3	2	2	0	2	0	0	4	0
GTTTTGCTTGTCACGT	ref_5896_new	20	24	13	18	17	15	27	15	31	19
GCGCGGTTGGTCGCGG	ref_5896_new	23	39	21	47	42	28	43	21	64	32
GTGGAACGTCGACGCT	ref_5896_new	31	43	49	22	57	27	53	32	46	30
GTGTGCAGTAATATTC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TCATGATAGTATTTCA	ref_5896_new	4	11	7	1	4	8	7	8	4	3
TATATAGTGTGGGCGG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TTTCCGAATGACATAT	ref_5896_new	6	8	4	6	10	4	5	1	7	8
TAGAACCCGGCAATCA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TCGAAGATTATTTATG	ref_5896_new	53	81	42	34	96	46	80	35	76	32
TATAAATCGTCTAATT	ref_5896_new	16	25	7	19	22	10	20	5	30	14
TTCTTTCTGATTCTGC	ref_5896_new	168	171	189	181	185	161	150	160	171	150
GAGAGATAAGGTGTTC	ref_5896_new	7	10	12	16	22	3	12	16	19	6
AGTACCGCTATGTGTG	ref_5896_new	4	8	5	5	5	1	14	6	10	4
CTAATACTGCACCTTC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CCTATGCAACCACTTT	ref_5896_new	7	17	7	5	4	6	10	3	17	1
TTTATTTTCGTCGTAT	ref_5896_new	9	28	18	9	13	11	24	13	31	7
ACAAATCTCCTTTTCA	ref_5896_new	5	6	5	3	6	6	6	2	3	2
TATCATTTTAAGGGTT	ref_5896_new	0	0	0	0	0	0	0	0	0	0
ACCTTTTGACTCTTAT	ref_5896_new	28	49	34	29	62	33	47	22	58	23
GAGGAGCCAGGTCTCA	ref_5896_new	64	102	54	70	94	65	81	69	102	61
CTTTATAGTCATGAAT	ref_5896_new	19	34	20	25	38	25	31	17	54	24
GCTTATTATTGAGTCA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TTGTGTAACCTAACAA	ref_5896_new	0	0	1	1	1	0	0	0	7	1
TCTCTGTACGGTGCGC	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TCAAGCCCGGATCCGG	ref_5896_new	47	44	60	37	48	21	53	54	51	44
AGGCAGTCATTGTCAA	ref_5896_new	3	0	4	3	2	0	5	2	1	3
AGCAGGCTTCATGGTG	ref_5896_new	10	12	12	13	13	7	20	12	16	11
GCGTGTCATTATGATC	ref_5896_new	4	5	11	6	8	7	11	1	14	6
GTCCTTCCGGCCACAA	ref_5896_new	18	36	24	20	26	22	30	15	32	24
GGTTTGCTGCTCTGCA	ref_5896_new	47	77	72	58	92	65	96	51	102	52
GCGTTTGTGAATTGGC	ref_5896_new	18	36	20	24	36	25	25	20	40	26
CCTAAAGCAACGTCCC	ref_5896_new	12	46	20	31	53	25	44	20	61	21
GTGCTAGTAATGGCGA	ref_5896_new	9	14	10	4	17	9	13	6	21	4
TGTACGAACTATCCTT	ref_5896_new	2	9	5	8	12	7	7	5	6	7
TGCTCAAGCTTGCACT	ref_5896_new	17	11	21	6	14	11	15	12	13	9
TACCACGGTATCAATA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TCCGTATCCGAATCGC	ref_5896_new	99	143	92	106	139	102	134	80	169	92
TAAGCTATGAACCAGG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TTGGGCCATCGTATTA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
TTGGCGTGACACTGGC	ref_5896_new	18	23	25	12	16	14	23	13	25	11
CGCCCTTCACGTATGG	ref_5896_new	42	48	51	47	51	55	50	42	61	37
GATGCTGATTTGTCTG	ref_5896_new	20	22	33	18	30	29	31	23	31	24
TCTAGTCGTCAAGGTG	ref_5896_new	0	0	0	0	0	0	0	0	0	0
AGAGAGGCAAGGTTAA	ref_5896_new	4	1	2	1	4	1	3	2	2	1
CATTTCCTGTGTAACA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
GTCCTTATTTCCTGGG	ref_5896_new	25	28	37	27	25	25	38	25	40	21
TCTCTTTTACGGACGA	ref_5896_new	0	0	0	0	0	0	0	0	0	0
AGGAATGCCGGCCACC	ref_5896_new	43	53	59	33	51	32	49	29	43	37
CTCTCCTGGAGGATAT	ref_5896_new	61	117	73	56	101	52	88	61	86	72
ATTATAGTAACATGCT	ref_5896_new	0	0	0	0	0	0	0	0	0	0
CTCGTATATGGTTCCA	ref_455_reverse	123	72	109	109	88	112	90	79	58	101
CCGTGCAGTCTGTAAC	ref_455_reverse	11	8	7	16	12	6	4	11	9	7
TGTACCTTCTTACCGT	ref_455_reverse	19	10	25	21	18	30	13	20	16	21
CGGGACTAGGTCGCCC	ref_455_reverse	30	19	30	21	20	20	26	30	19	20
GGCCCGCAAATGACTG	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCCGACGACATTC	ref_455_reverse	9	12	20	15	8	12	17	23	16	19
CCCTATTCTGGAGTAT	ref_455_reverse	9	4	3	9	10	9	11	6	4	7
ACTTCAGCTGCCGCTC	ref_455_reverse	13	26	21	26	16	12	12	14	13	12
GGGTATTTTATGCATG	ref_455_reverse	77	70	95	87	74	83	76	73	78	74
TTTCGTCTCTGGAGGC	ref_455_reverse	52	38	56	42	26	36	32	40	27	38
CGCCTGCAATTGCGCT	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTTTTTATACCAT	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
GCAATATCCAGATCCC	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTTACACTGGACC	ref_455_reverse	127	98	164	129	110	121	115	114	83	102
TGTCCCTGATCCCAGC	ref_455_reverse	26	17	41	30	25	19	21	28	20	30
CTGCTACATTAGACAG	ref_455_reverse	35	38	52	41	32	42	24	52	37	26
ACCTTTGCACGACAGG	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTTGGATTTGACT	ref_455_reverse	10	11	19	15	9	19	12	11	15	16
ACATAGTCAATGGTTT	ref_455_reverse	96	67	112	92	40	93	64	83	69	72
ACAGATCTTAAAACAG	ref_455_reverse	114	62	123	137	74	102	82	116	74	98
CCTCGATCGCTTATGG	ref_455_reverse	16	7	15	17	5	22	10	19	7	15
GCCGTTTTATAGACCC	ref_455_reverse	147	36	142	108	85	102	65	104	68	103
TGGGTTCGACCGAACC	ref_455_reverse	75	32	87	61	36	58	45	47	62	41
TTCCGCTTGTTATTGG	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
CAGGTAGCAGCGTATT	ref_455_reverse	61	52	73	51	42	56	42	59	33	57
AGGCCGCACCACGTAA	ref_455_reverse	11	14	9	22	17	22	9	15	6	14
CATAAACACCACCGTT	ref_455_reverse	61	42	67	53	30	45	30	54	30	36
GGCTTGCTGCTCCCTA	ref_455_reverse	120	77	133	116	60	96	76	112	68	97
CGCCTATCTGCCTTAT	ref_455_reverse	43	58	55	53	45	52	47	39	46	55
TTTTGTAATAACGCGA	ref_455_reverse	8	10	26	14	5	15	9	17	7	8
TACGGACCGCCTATAG	ref_455_reverse	48	29	67	58	40	56	44	44	33	61
TCACATATGCTTGAAA	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGTGTGTGCTCAC	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
GCGCCTCAGGCTGACG	ref_455_reverse	52	33	51	40	18	35	21	36	32	38
AAAATATCCCACAGGT	ref_455_reverse	11	7	26	14	5	16	13	20	10	10
TAGCTTCCCATGTTTC	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
TTCCGAGATTAAGGTC	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
TAATTGCGATAGGAGG	ref_455_reverse	207	204	286	220	204	201	190	207	225	208
CCTGTCATCCATTTCC	ref_455_reverse	1	1	2	6	1	6	0	3	0	1
GTGTGGGCTAGTACAT	ref_455_reverse	10	8	7	10	15	12	10	8	15	6
GCAGTTCAGTTGCTAT	ref_455_reverse	41	18	37	26	20	34	16	21	23	20
AATTCGGCCAGAAGTT	ref_455_reverse	38	38	64	50	19	58	27	46	38	45
TCGTTTTAACAGATTC	ref_455_reverse	6	4	17	4	0	8	2	3	2	3
CGACCTTTTCCTAAAG	ref_455_reverse	103	59	126	103	50	82	69	96	61	94
ATGGGGCAAATTTCGA	ref_455_reverse	18	5	20	20	8	16	7	23	7	16
TGGGGCACATCATTCT	ref_455_reverse	228	167	293	291	177	243	194	282	200	226
AGGAGTTGATCTAGAC	ref_455_reverse	30	28	46	40	24	31	24	27	34	34
AGCTTTAATATCCGTC	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
GATAAAATGTTCCGAA	ref_455_reverse	31	26	46	22	15	43	26	31	10	29
AGATGTATTGAAACTC	ref_455_reverse	70	36	77	74	48	88	55	63	45	72
GTGTCAGTCTTTTAAT	ref_455_reverse	102	55	111	86	62	91	79	83	63	70
GGTTTGTCGTTAATTA	ref_455_reverse	242	158	307	249	147	221	159	236	157	214
CGAATTTTTTATCTTC	ref_455_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTGTGCTCGGATC	ref_3359_fdr	26	29	29	35	30	20	20	16	21	21
CGATTCTTTCTCTAAC	ref_3359_fdr	9	10	9	5	4	5	9	10	2	2
TGTTGACCTCTGGGTC	ref_3359_fdr	14	24	30	18	20	14	25	14	25	16
TACCAACACTCATATG	ref_3359_fdr	211	455	239	188	446	174	476	147	496	155
TTTGTTCGTCCACGGC	ref_3359_fdr	14	20	27	28	21	18	10	18	20	14
AAAGTTTTCGAAAAAG	ref_3359_fdr	89	95	100	90	93	79	104	79	125	95
TTTATGCAAGACACTA	ref_3359_fdr	48	69	73	38	54	52	65	42	62	41
TAAGAGGCTGCGGCGT	ref_3359_fdr	24	26	39	23	25	30	42	33	51	18
AATCATTTATTCTTTT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCCCATGTTCGAC	ref_3359_fdr	171	163	215	171	200	167	214	135	216	163
CACCTTATTCAAAGTT	ref_3359_fdr	0	1	0	0	1	0	0	0	1	0
CCTTGCGTGTCAGTCA	ref_3359_fdr	25	24	28	18	32	25	36	23	26	17
GTATCTTAACTCCTAT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGAATCCTTCTAC	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATCCATTTCCAG	ref_3359_fdr	52	40	51	41	58	44	60	50	45	57
GCGTCAGGGGTATCCT	ref_3359_fdr	19	14	18	15	23	20	23	17	18	9
TATGCGGAGATACCTC	ref_3359_fdr	17	24	26	16	30	11	27	15	29	23
GAAATTCTATACACTC	ref_3359_fdr	47	77	36	37	67	36	95	21	75	24
GACTGTGCGAATGAAT	ref_3359_fdr	28	18	37	25	29	30	21	36	45	23
CTATGCGGTATCGTTT	ref_3359_fdr	6	15	13	18	15	13	18	11	8	6
TAGGTAATGGCCGCAA	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TCGCAGGAGAATATGC	ref_3359_fdr	217	190	232	211	217	199	208	226	201	185
CTATTCTCTACCCTAC	ref_3359_fdr	67	111	92	77	89	75	89	80	99	55
GATTTATGTTCGGTGT	ref_3359_fdr	52	76	85	41	45	54	61	37	67	46
AGATGCGGCCAAAGGG	ref_3359_fdr	40	39	51	43	31	42	34	39	42	38
TATTTTACGTCGTGAG	ref_3359_fdr	139	175	166	130	198	152	178	126	187	133
AACCACAGTTTACCAG	ref_3359_fdr	19	13	20	25	23	12	13	29	19	13
CGCCTGTGGAGGGAAG	ref_3359_fdr	13	42	27	20	26	22	16	16	26	18
CGGCGTTTGTGTTTCA	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TACCTTAGGAAGCGTA	ref_3359_fdr	6	6	7	3	2	2	4	7	2	3
CGGGGGAAGTACTCAC	ref_3359_fdr	38	61	40	41	57	32	63	38	85	35
AGATACAATTCTGCTG	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
ACGTGAATGTCGGTCA	ref_3359_fdr	23	38	29	27	29	32	27	27	33	42
GTAGCCGTGCCTCCGT	ref_3359_fdr	26	34	34	33	37	21	35	21	40	25
TTAAACCATCGCCGGA	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
CTTATTTGCTGGATTC	ref_3359_fdr	12	8	22	20	16	16	16	9	13	10
ATAATTTAGGGTGCGT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCGCTTTTGGCA	ref_3359_fdr	17	21	11	20	18	16	17	14	20	17
ATCATACCCTGTTTCC	ref_3359_fdr	24	40	46	39	37	39	23	21	52	32
TAGATTTCCTCACTGA	ref_3359_fdr	26	33	25	14	12	24	26	26	36	18
ATTAGAGAACCATTGT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TGTGACAGGCCTTCGG	ref_3359_fdr	67	60	73	60	63	51	61	46	64	64
TCCCAATACATAGTAC	ref_3359_fdr	40	39	42	36	58	51	50	51	48	36
TCGCAACTCGCAGTAT	ref_3359_fdr	130	184	129	122	123	120	130	121	148	101
AAGATCTCACCCTGTT	ref_3359_fdr	87	67	94	112	75	72	55	86	86	69
GCCCTTTCTTCGCTGC	ref_3359_fdr	46	48	57	49	48	62	56	48	61	48
GCGACCAGTGGTTGAT	ref_3359_fdr	12	9	13	22	13	18	12	18	19	15
AGAGACGGAATCTGGT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTGAGTGTACCT	ref_3359_fdr	12	12	13	10	15	12	5	9	12	8
CCGTATAGTGGCTGCC	ref_3359_fdr	7	14	10	7	8	8	23	4	8	8
TTCCTGTTAATTGTTG	ref_3359_fdr	18	30	26	25	25	33	18	27	24	27
ATTGCATTATTATTGG	ref_3359_fdr	54	48	76	68	53	63	48	55	63	60
ACCTAGAATTCAGCCC	ref_3359_fdr	28	74	61	46	69	31	72	53	71	37
AGTCCACCGCGTCATG	ref_3359_fdr	56	66	57	54	76	40	61	50	77	58
GCTCTCGTAAGCCCAG	ref_3359_fdr	23	21	29	24	26	19	22	20	31	28
CGGTAAATGGCTGAAT	ref_3359_fdr	5	6	7	7	10	8	5	9	5	8
AACACCTTCGCATAAT	ref_3359_fdr	123	113	163	139	118	137	131	124	125	101
GCCTTCACTGCCCCAT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTAAGTTTCTCGT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
AGGAAAATATCCAGAA	ref_3359_fdr	4	4	5	4	6	7	4	2	5	2
CCTTGACCCTCGTAAC	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
GTAGTAGGCCTTTCGT	ref_3359_fdr	27	22	24	19	27	21	24	19	34	23
ACCCAAAGGCTGCTTG	ref_3359_fdr	19	27	36	26	16	28	34	22	28	19
AAATTGGTACGTTTCG	ref_3359_fdr	15	6	12	10	14	11	3	12	12	7
CCCCTTGAATGTCTAG	ref_3359_fdr	7	7	13	6	18	10	8	13	17	11
ACTTAAGATTATTCGG	ref_3359_fdr	9	5	11	8	2	9	10	4	9	7
ATAGGTCTTTTACGCC	ref_3359_fdr	1	0	1	1	3	2	1	0	2	0
CAAGAAATCACTGGAC	ref_3359_fdr	58	51	71	61	52	62	61	69	83	47
GCGACTGACAACAGTT	ref_3359_fdr	16	22	12	9	8	11	25	8	8	16
TTTCACATTAGGCTCT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TATTCTGTTCGGCTGC	ref_3359_fdr	27	45	40	27	29	31	24	20	36	31
GTAAGTCACAATAATC	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCACTTGCCGGAT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
ACGCAGGAGAATATGC	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TGGTACGTCTATTGAG	ref_3359_fdr	21	35	24	13	30	22	33	10	28	26
TATTGTTGGGTACGAT	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTGGGCATATCC	ref_3359_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTCTACTGAACTC	ref_3359_fdr	51	54	53	37	50	53	75	48	64	45
TATCGGGACGCTTGTG	ref_3359_fdr	9	6	4	8	9	9	10	4	12	6
CTTCTCTGTAGATTCG	ref_3359_fdr	11	11	10	7	3	6	15	5	6	3
CTCGCTGTCTATGTGG	ref_3359_fdr	43	62	60	42	80	48	61	45	65	47
GGTGTTCAACATCGCG	ref_3359_fdr	33	43	51	39	36	21	55	40	47	34
CGAGTCGGTTTCAGTT	ref_6070_new	166	98	192	174	113	184	115	164	113	185
GTCAGGGTTTGGCCCT	ref_6070_new	168	121	210	176	95	151	105	138	98	141
GCTATCACCCGTAAAT	ref_6070_new	65	54	79	63	55	40	49	53	49	37
CACCGCTCATGTCTCA	ref_6070_new	31	25	43	47	24	37	32	41	23	20
CTACGAAGTATCCCTT	ref_6070_new	113	69	167	118	100	122	79	122	113	117
ATACCGCGCGTCCCCG	ref_6070_new	0	0	0	0	0	0	0	0	0	0
GAATCTTGGGTCATAT	ref_6070_new	371	231	450	440	208	398	222	350	265	339
GCTATATGGTGGGATT	ref_6070_new	0	0	0	0	0	0	0	0	0	0
GTCCAACTGCGCCTTC	ref_6070_new	14	4	14	12	6	11	3	7	1	4
TCTTCCACCAGGCTTA	ref_6070_new	36	32	43	44	21	44	17	46	15	31
TTTCCCCTTTCTCTGC	ref_6070_new	84	31	104	68	42	69	37	65	41	92
CGTTTTTGCATATGGA	ref_6070_new	8	8	19	13	4	19	9	11	9	5
TCGGCCTCCCCCGGGT	ref_6070_new	27	14	34	33	13	22	22	21	32	31
GTGCTAAGATCCCATC	ref_6070_new	68	28	69	71	35	69	36	49	60	50
CAGCAGATTCTCATCC	ref_6070_new	82	55	111	91	52	103	67	108	61	93
ATGGACCTACATTATA	ref_6070_new	16	3	17	13	5	10	6	6	8	6
ACGATTATGCTTGACT	ref_6070_new	44	49	49	43	47	25	16	34	39	37
TTCATGTTCTGTGATA	ref_6070_new	38	34	36	39	36	39	33	36	47	25
CGTAACCGTAAATACC	ref_6070_new	157	126	261	221	123	185	162	200	112	143
CTTCGCCTCGTATTCG	ref_6070_new	107	77	104	124	93	71	79	103	62	74
GGTGTGTAGGCTATGC	ref_6070_new	9	9	22	15	5	10	11	23	15	14
GAACCTTTCCCTATAT	ref_6070_new	27	14	40	26	17	22	10	15	21	22
AACCTTGAAAATGCCC	ref_6070_new	342	177	414	366	192	328	171	325	187	257
TCTGTCAGGTTAACAC	ref_6070_new	72	47	78	71	52	70	43	65	53	45
ACACCCACACCGTTGG	ref_6070_new	0	0	0	0	0	0	0	0	0	0
GCTTAGAGTGGAGAAT	ref_6070_new	32	22	34	46	21	49	28	26	22	31
TAATGCAGATTATTCC	ref_6070_new	116	74	116	114	67	138	74	110	71	104
TTCAGGAGTTACCGCG	ref_6070_new	70	84	94	95	92	83	90	86	95	61
CGGCGCAGGGTTTACG	ref_6070_new	50	39	57	53	31	50	39	48	49	50
ATTATTGGTGTGGGCT	ref_6070_new	42	33	56	42	32	45	30	54	33	58
TATGCCCCTATACACG	ref_6070_new	181	114	245	172	91	157	148	157	124	147
TAACTTCTTGTGGTTT	ref_6070_new	125	49	101	105	64	65	53	102	66	86
ACCCACGCCCAGAGGT	ref_6070_new	78	54	105	97	54	92	63	83	67	72
TGTTGGTCCCAGTTGC	ref_6070_new	71	52	84	72	43	83	55	87	43	56
GACCAGGCGTCTGGGT	ref_6070_new	45	32	65	42	35	47	38	27	40	32
TGGCATCAATTCGCCC	ref_6070_new	0	0	0	0	0	0	0	0	0	0
CATCGTAGAGTTCGCG	ref_6070_new	130	72	151	114	84	117	75	104	69	87
GATCTTTTAAGTGCAG	ref_6070_new	44	14	49	43	35	38	26	38	20	36
ACATGTAGTCCCGGTG	ref_6070_new	26	19	32	23	18	22	13	19	21	20
GGTTCTGGTCCTGAGT	ref_6070_new	67	50	106	68	63	77	52	70	58	80
CACTGAAAGGCCGTCG	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
CCTGCAGTATGATATC	ref_3359_reverse	14	11	14	14	9	7	10	11	11	6
TACGAGATTAAGTTCG	ref_3359_reverse	56	33	42	33	41	36	38	23	42	33
TTCCAAAGTTTGAAGT	ref_3359_reverse	21	16	24	20	28	21	19	15	22	11
AGTGGATCTGGAGCAG	ref_3359_reverse	93	98	95	110	85	102	93	80	103	83
TTGGTCGTAAAGTTAC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
ACACTTCCGTTACTCA	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TATCAGGTCTGCCGGT	ref_3359_reverse	16	22	23	20	15	14	12	13	17	15
ACTGGGTTGTCCTCTG	ref_3359_reverse	50	29	62	54	49	47	59	51	55	51
CCTTCGTTTGTATAAA	ref_3359_reverse	18	14	15	10	11	5	11	11	31	8
TCATGGCACCACATAG	ref_3359_reverse	15	13	19	14	8	18	12	9	21	13
GCGAACTTTCGTGCCC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCCAGCGTAACGC	ref_3359_reverse	15	36	37	22	42	25	23	30	26	24
CTCCTGACAAAATGAG	ref_3359_reverse	84	77	82	80	86	71	81	52	82	75
CATGTTTTCACGTTCT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCAAGTGAGTGTC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TACAGACAGGCAGACG	ref_3359_reverse	58	43	75	64	54	50	46	56	66	59
CACTTATTCGATTCGC	ref_3359_reverse	22	18	24	25	26	19	23	21	28	24
GAAGTAGTAAGGGACT	ref_3359_reverse	18	29	20	17	24	14	22	13	22	23
CAGTCAGACTTCACAG	ref_3359_reverse	19	34	22	17	26	20	32	14	37	26
CCGGAGTTTCATCTAG	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
GCGTACAATATGCCAT	ref_3359_reverse	52	49	71	74	75	56	71	73	77	65
ATTCGCTCCTGCCGTT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTCCTGAGAATAG	ref_3359_reverse	22	19	20	8	17	16	25	12	23	23
CGTCCGTAACCGATTT	ref_3359_reverse	18	8	18	12	6	5	12	12	19	11
GCTTTGTTTCTTTATA	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TTCGTGTGCGGACGAG	ref_3359_reverse	24	12	20	17	34	13	30	22	27	19
GGGTGTTTTACCCATA	ref_3359_reverse	20	19	27	18	20	17	17	13	25	20
GCCGTAATGTGACATC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
CCATCTGTGTGCTACT	ref_3359_reverse	7	3	7	5	3	2	14	5	3	7
GATACTGGGTAGCGCT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
CGCAAAATTGCGCAAA	ref_3359_reverse	10	3	14	9	8	10	3	6	7	5
GGTGCTGGTAGGTCAG	ref_3359_reverse	289	272	364	305	318	296	294	273	331	277
TCATTGAGGCTATCTA	ref_3359_reverse	0	1	1	0	0	1	0	0	2	1
CCATCGCCTTTGCTCG	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
GTATTTGCTATTCTGA	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGTGGCTATGGAA	ref_3359_reverse	10	12	9	5	16	4	6	6	12	13
AATCTTAGTTTTAGCG	ref_3359_reverse	70	80	82	81	78	71	83	83	90	98
CGGCAGAAGTTACATG	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
GCCCAGAGCTGCCGGT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TACTTATTCGCGAATC	ref_3359_reverse	108	119	152	114	115	133	121	99	133	129
TTTTTAGTGGTCCCAG	ref_3359_reverse	9	14	15	17	14	9	17	18	22	16
TTTACTCGGAGGAGCC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCCGCGGATGATA	ref_3359_reverse	8	2	7	2	1	5	4	4	1	3
GAATGTAGGATGGATC	ref_3359_reverse	46	45	37	46	36	36	37	33	42	35
GCCACTATCCTTGCAG	ref_3359_reverse	218	246	277	241	287	231	241	206	256	210
GTGCTCTTTGGGGACT	ref_3359_reverse	28	32	44	24	42	34	25	21	28	36
TACAACGTACTGATTA	ref_3359_reverse	41	40	52	30	34	39	51	36	43	23
GTAAGGCTCGGACACG	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTAAACAAGGACC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCGACTGAAATAT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCCCACCAATGTA	ref_3359_reverse	26	28	27	19	19	9	13	11	16	10
TTAACGTCGCGTTGTT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
GCTACTTTGTCAGATG	ref_3359_reverse	60	75	84	89	67	72	87	75	85	64
CGTCTATTTGCGCCGC	ref_3359_reverse	141	131	144	140	161	148	130	128	159	115
GTTTGAGTAAACCCCC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
ACAGCTGTCCTTTCCC	ref_3359_reverse	11	21	24	22	12	27	22	17	22	20
GAACTGTTTTTGCGTC	ref_3359_reverse	16	21	21	24	28	11	22	15	21	19
AACCTTACATAGCGGG	ref_3359_reverse	23	24	13	30	32	16	19	21	23	18
CTCTTCTACTTTTTGT	ref_3359_reverse	27	35	28	17	19	25	34	24	31	13
TTCGGATATTAATATT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGCCCCAGAGTTA	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
AGCCGTGTCTGTCGTG	ref_3359_reverse	17	22	18	16	28	15	16	12	23	11
TTCGGGCCCCAACGGT	ref_3359_reverse	91	68	114	79	83	85	83	74	96	71
GATTAGATTTGCCATG	ref_3359_reverse	22	30	49	30	25	32	33	25	22	31
GTTCACCCCGACCGCT	ref_3359_reverse	3	10	11	10	8	15	10	8	12	7
TCGATATCGGGAATCA	ref_3359_reverse	22	26	21	15	18	24	12	28	18	19
TCCACCATGCATTTCA	ref_3359_reverse	6	14	11	17	3	11	8	8	13	6
CGCATGCAGCTAGCGT	ref_3359_reverse	19	23	21	22	21	21	26	26	17	22
CCGGCCAATTTAGTCG	ref_3359_reverse	32	57	38	33	39	30	55	24	52	32
TGGTCGTGTCACATAG	ref_3359_reverse	39	42	35	43	58	28	42	48	48	42
CCGGAGTTTCAAGGTC	ref_3359_reverse	17	17	17	23	22	20	22	23	35	18
AGACTGAAGTGTTTTT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
CAGCAGAGTGACTTCT	ref_3359_reverse	15	20	30	25	18	17	23	22	24	25
GCGCCCTGAGTCTCAT	ref_3359_reverse	40	23	38	22	43	41	25	26	32	44
CTGGCGTAAGGTGGTG	ref_3359_reverse	25	31	34	17	23	15	26	23	29	23
GGCGGCTTAGGTAGAC	ref_3359_reverse	97	112	142	89	115	128	101	97	102	88
CGGGGTCTGCAAGTTA	ref_3359_reverse	18	21	18	10	15	18	19	15	11	15
GTTATGATACTGTTGG	ref_3359_reverse	37	49	41	46	43	37	57	36	44	32
CTCCGGATTCTGTGTG	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTTTGTCGAATTA	ref_3359_reverse	12	8	10	11	10	12	17	18	16	10
GTGCCCAGCTTGCGTT	ref_3359_reverse	3	3	9	4	10	4	1	10	5	2
CCATTAGGGCCACTGT	ref_3359_reverse	22	46	23	25	55	16	46	27	55	20
TCCCGCGCTTAAGGTG	ref_3359_reverse	14	35	17	15	35	16	33	16	48	13
TCTCCGGGGGCGGAAT	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGAAGAATATACC	ref_3359_reverse	24	22	35	33	28	25	29	17	22	21
AAATTGGCCACATCTG	ref_3359_reverse	22	23	24	20	25	23	25	20	26	22
ATTTAGTTCTAGCAAA	ref_3359_reverse	21	25	19	25	14	27	22	18	21	20
ACGTGGGGGCGCTGTG	ref_3359_reverse	36	35	44	40	48	31	50	38	31	22
CTCTTCATTTGCTAAC	ref_3359_reverse	14	12	19	14	10	9	9	9	14	10
CAAGGGTGGTCAGTGT	ref_3359_reverse	30	23	33	23	29	31	23	16	26	17
ACTTGTGACCCTGTGC	ref_3359_reverse	12	16	13	15	22	15	12	13	21	7
AACGCCACATAAACGC	ref_3359_reverse	6	3	6	6	5	8	7	4	6	4
TCTATCGCGCGCTGCT	ref_3359_reverse	7	14	14	20	10	9	6	12	7	8
TTTTTCCTCACTTTGC	ref_3359_reverse	0	0	0	0	0	0	0	0	0	0
AACCCTCTTTTTTTCA	ref_3359_reverse	22	28	27	20	20	29	23	27	31	28
CACCTGTTCATCAGCG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
TCCCGAGCAGGTTCTC	alt_1583_missing	44	29	37	45	39	39	47	42	40	42
TTTTCCCCTTGTGCTC	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
CTCCGTAGGTAACGAA	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GAATGCGTCTAGAACA	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
AATATCTTCGGGACTG	alt_1583_missing	37	25	36	23	18	27	30	31	21	19
CCTGAGTTAAATCCAC	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
ACGCGCGTTATTGGCT	alt_1583_missing	10	16	13	11	17	16	19	7	12	8
GCACTGGCGATGAGGT	ref_1583_missing	24	14	14	26	16	18	30	11	15	8
ACTGGCTCTGTCCGTT	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
AGCGTAAACCCTTTTT	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
CTTGTAATTAAATATC	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
TTCTAGTCATTGTGAG	alt_1583_missing	57	57	68	45	65	49	69	38	65	42
ACGTTCGTTTGTTACT	alt_1583_missing	41	60	37	37	50	50	50	39	55	38
CTAGGACCCGGTTTCT	alt_1583_missing	5	10	13	8	10	7	17	3	8	10
GGTCTTTGGTGGATGG	alt_1583_missing	6	9	9	4	5	1	7	3	10	2
TTAGCACCGTAAGCGT	alt_1583_missing	9	10	15	9	14	4	19	10	11	6
GTGCTTCGGCCAACCG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GGCTTATAATACATGT	ref_1583_missing	9	16	13	9	17	12	25	13	15	10
GATATCTGGTAGGTAG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
ATGATCCGTTCCGTGG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GTCCTCTGAGTCACGT	alt_1583_missing	62	54	88	72	55	60	63	49	50	62
CAAATCTCGCGCGTAT	alt_1583_missing	0	4	4	6	6	5	4	3	4	1
GCAAGGATATTGAAGT	alt_1583_missing	12	16	14	11	15	10	18	16	15	10
TAGATAGGGTCTGTAC	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
CCCGGACCGGCATTTG	alt_1583_missing	83	136	94	84	136	73	134	83	148	68
CATGTGAGAACTTGTC	alt_1583_missing	25	24	32	32	32	16	32	30	37	19
CGCCCGCACGCATCGT	alt_1583_missing	16	17	12	23	19	28	17	13	30	13
ACGCCGGTTACATGCC	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
ACTTTAATACTATTGT	alt_1583_missing	25	23	29	18	27	31	22	25	21	20
CATTCTGCTGGAAGAG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GTGAATAGATTCCTTT	alt_1583_missing	35	32	40	35	25	31	27	37	26	23
TTCGAACAGGTTTCTC	alt_1583_missing	6	8	9	17	18	9	9	7	14	6
TTGTGAGGGCATAACG	alt_1583_missing	24	20	27	23	22	16	20	12	26	22
CGTAACTGGTAGAAAC	alt_1583_missing	9	10	16	6	8	16	11	7	12	19
TTAGATTTCGGGCTCC	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GATTGCCTTACCTCGG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
AAGTTATCAATCGATA	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
CCAGAAGGCTCCACTT	alt_1583_missing	6	6	8	2	6	4	12	2	5	4
TTAGCGATCATGAGAC	alt_1583_missing	10	4	15	5	9	13	13	8	9	11
GCCCATGGTCGAGGCT	alt_1583_missing	96	68	90	84	94	84	107	79	84	84
TACGCTTTCATGAAGT	alt_1583_missing	17	24	27	16	22	17	25	22	16	18
CCATTCCCGCTGGTAG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
TGCATTCACCGAGGTT	alt_1583_missing	37	45	48	50	41	53	47	35	45	34
GTCCGGTATTTAGGCG	alt_1583_missing	75	70	109	66	79	71	86	63	121	80
GGGTAAACTCTTACCA	alt_1583_missing	13	29	21	21	23	12	41	11	37	10
ACCCTTGTCCCAAACG	alt_1583_missing	64	75	91	59	80	51	78	68	68	43
TACTTTCAAAACAACG	alt_1583_missing	40	33	32	27	29	20	29	22	34	23
CGTTTTCCAGAAACCA	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
CGCTTTGCGTGGACGA	alt_1583_missing	2	8	9	3	3	4	7	3	7	2
TCGTTATATTATTATG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GTCCCCGCGAAACACG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GTCGGGACACTGGCCA	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
TAAGCTCGTCTACAGA	alt_1583_missing	21	26	26	25	21	25	34	23	28	24
CTCTTTTTATGAGAGG	ref_1583_missing	37	38	45	33	40	32	54	21	48	30
AAGTTGAACTGGTCAG	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
GGCCCGACATATAACC	alt_1583_missing	16	13	21	14	18	17	14	8	9	14
TACGATCCACAACGTT	alt_1583_missing	0	4	3	1	7	1	5	6	1	0
AGATGGTCCTTCAGCC	alt_1583_missing	0	0	0	0	0	0	0	0	0	0
AGCACTGTTCGCATCG	alt_1583_missing	36	46	32	29	38	35	35	28	55	25
CCGGTTATTACAAGGA	alt_5725_new	0	0	0	0	0	0	0	0	0	0
GTCATATTCTCCTGGC	alt_5725_new	13	27	11	15	18	18	24	14	28	20
GCGTTGCATCAATGAA	alt_5725_new	25	33	42	32	47	21	40	22	50	26
CTCTCAAAGAAACCTT	alt_5725_new	0	0	0	0	0	0	0	0	0	0
GAATGCGAACTTGGCG	alt_5725_new	0	0	0	0	0	0	0	0	0	0
CCGAGGCTTCCATTCA	alt_5725_new	6	7	3	8	9	2	7	7	14	5
GGGCTGAGGCCTACAA	alt_5725_new	24	33	18	22	32	10	25	15	29	14
AAATTTTCCCGTCATC	alt_5725_new	11	9	13	8	24	9	15	8	17	13
GAGAGGGATCAACAGG	alt_5725_new	35	43	42	37	61	43	38	32	74	37
TCTGGATTAATCAATA	alt_5725_new	4	7	6	2	5	5	5	4	3	2
TTCGTGGTCACCTAGG	alt_5725_new	12	20	20	8	27	9	30	14	24	9
GCGTAGCTTCGGAATT	alt_5725_new	87	132	113	81	150	95	128	98	160	88
GATGTGTATGGCCACT	alt_5725_new	33	41	32	25	27	20	40	15	31	20
GTTCTACTGCCCTTCT	alt_5725_new	43	83	55	38	75	50	80	51	72	35
TCGTTGCCACAACCAC	alt_5725_new	4	14	7	0	3	1	5	1	9	4
CTCGACTGTAACCCTA	alt_5725_new	22	39	32	18	43	27	29	30	38	26
TTGCTGCCGATGAAAC	alt_5725_new	6	9	2	2	5	1	8	4	7	2
CATGGAGGTTTCGTCC	alt_5725_new	22	37	27	19	32	24	31	16	35	14
TACTTACCAGTGTGCA	alt_5725_new	7	58	6	1	77	4	85	0	75	5
AGGTGCGATTTCTTTG	alt_5725_new	6	11	5	4	7	2	3	3	6	4
CTTTGCCTTAGCGATT	alt_5725_new	13	36	25	16	23	11	33	14	32	10
AAGATCGACCTTTCGA	alt_5725_new	14	34	16	20	25	11	25	16	31	13
TTATTCCTCCTCTCCG	alt_5725_new	27	35	42	28	49	22	49	36	42	30
GGCTTGCCTATCGCCT	alt_5725_new	21	41	28	28	34	27	48	19	53	26
CTTAACCAGCGGTTCG	alt_5725_new	68	107	85	70	118	62	120	78	106	57
GGTAAGGGAGTAGTTT	alt_5725_new	20	27	19	10	21	18	23	19	28	12
AGCTAAGCTATGTCGC	alt_5725_new	16	31	15	18	18	13	31	18	19	14
GCGTAATCTTTGTGTT	alt_5725_new	0	0	0	0	4	1	2	0	0	1
GCGCCACGGCTCAGAC	alt_5725_new	107	139	120	91	145	79	141	70	144	84
TGAACCTGTGTTTAGC	alt_5725_new	113	132	116	113	130	85	160	94	158	110
TTGTCACTGTAATTGG	alt_5725_new	9	17	17	12	20	6	16	10	28	10
AATCCTTAGGTCTGCT	alt_5725_new	19	40	30	10	47	23	43	18	46	11
TAGGATCTAGGAAACT	alt_5725_new	22	28	14	20	41	20	27	17	32	10
AGTTGGCAGGAAGCCA	alt_5725_new	12	16	12	4	8	13	14	6	16	4
CAGCAAAGTTGTTAAT	alt_5725_new	12	10	16	6	25	7	21	8	25	14
CCGTCGTTGGCTTCTG	alt_5725_new	21	37	36	24	56	21	50	24	55	23
TTGCGGCTACCAAGGG	alt_5725_new	14	22	8	17	17	17	25	6	14	15
CTTGTAGGCGGGGGAC	alt_5725_new	0	0	0	0	0	0	0	0	0	0
TAAAAAGCGCCTATGA	alt_5725_new	0	0	1	0	1	0	2	2	1	0
CTCCCCCCCTCTAGGA	alt_5725_new	0	0	0	0	0	0	0	0	0	0
TAATGCGATTCTTAGA	alt_5725_new	23	41	38	26	39	40	52	20	58	25
TTGCAATTGTAGTAGG	alt_5725_new	2	2	4	0	2	6	1	1	3	2
TCGGTGTATCACCCCT	alt_5725_new	7	77	20	9	68	6	72	13	68	9
TATAATGCAATTTATT	alt_5725_new	49	60	62	42	55	44	56	44	65	34
CAGCTTTAGTGACAGC	alt_5725_new	26	60	28	22	52	20	44	29	54	17
GGGCCACAGTTTCCCT	alt_5725_new	26	51	50	37	57	38	74	43	63	26
ATGTTTCTACACTGGG	alt_5725_new	127	220	137	135	184	134	216	128	214	109
TTCTACGCAAAGGTAT	alt_5725_new	0	0	0	0	0	0	0	0	0	0
TTCGCCGTATCCGTGA	alt_5725_new	17	61	19	17	55	15	57	12	66	12
GCGATGCGGAACTCCA	alt_5725_new	33	37	32	21	37	21	32	30	36	24
GTTGACACTGTCAGAT	alt_5725_new	10	14	14	11	18	8	10	8	19	7
TTGTCTCCGACAGCCT	alt_5725_new	46	55	42	33	68	36	67	40	68	27
CGGGGGCTATGAATCT	alt_5725_new	0	0	0	0	0	0	0	0	0	0
CCTGCCCTTTTGCAGG	alt_5725_new	0	0	0	0	0	0	0	0	0	0
CAACGTTTAGATCACT	alt_5725_new	28	60	32	30	63	27	65	23	47	29
ATCTAGTCCCCTGTGT	alt_5725_new	0	0	0	0	0	0	0	0	0	0
TATACACGTTGCGTTT	alt_5725_new	17	34	24	18	26	13	22	16	36	23
TACTCTGTTGTATAGC	alt_5725_new	81	170	130	104	199	96	183	99	198	117
TATTCACTTGCCGGTG	alt_5725_new	70	95	78	57	113	63	115	63	92	56
TCCCTGGCCTTGTATT	alt_5725_new	72	126	117	85	160	87	149	78	173	68
CTCTGTTCAAACACTC	alt_5725_new	11	16	10	6	29	10	28	10	23	15
GGAGTAACTACTTGAG	alt_5725_new	31	38	34	26	38	16	30	27	43	13
AGTGTATTTGAGCACG	alt_5725_new	4	14	11	13	12	3	16	9	24	12
ACAACGTTTGCTTCTC	alt_5725_new	24	40	34	32	54	30	40	13	51	27
GCGAAAACGGAAAAGC	alt_5725_new	0	0	0	0	0	0	0	0	0	0
CAACTTAATCCGAATC	alt_5725_new	5	11	8	6	14	9	21	8	19	7
GGATATACTCTGGGTG	alt_5725_new	11	13	7	3	14	5	13	4	10	2
GGTGAGACCATTATAA	alt_5725_new	22	55	38	38	55	29	41	36	58	26
TTTCGGATATCCCGGG	alt_5725_new	37	72	54	44	62	35	68	34	62	44
CCTTGATAACCTACCG	alt_5725_new	2	39	12	9	24	6	31	5	43	11
TGTGTTTGCGAAAACT	alt_5725_new	6	30	28	13	31	11	21	10	17	12
TGACTAGCGACGGCAA	alt_5725_new	41	99	62	47	86	45	83	58	107	37
TAGCCTCCGTGTGCAC	alt_5725_new	7	4	4	4	4	4	6	1	16	3
AATCATTGTCAAGTGA	alt_5725_new	30	29	24	13	32	20	56	17	47	26
TTTGGTTTATATCGAC	alt_5725_new	105	183	119	100	173	114	181	88	165	84
TTGGTCCCTTACCTGG	alt_5725_new	9	47	11	5	37	5	39	8	44	7
ACGAGACCAACGTAAT	alt_5725_new	27	64	28	24	54	38	48	30	52	16
ATGTGGTATGGATAGA	alt_5725_new	0	0	0	0	0	0	0	0	0	0
GAATAGCTAGTGTTTC	alt_5725_new	40	53	28	44	57	32	64	30	62	34
GTTCTCCTCCCGAAAC	alt_5725_new	35	73	53	50	85	39	67	28	81	45
TATCTGTTATCTGAGC	alt_5725_new	54	90	86	84	108	50	104	80	109	55
TCGTGGTGCACAAGCT	alt_5725_new	15	19	14	11	23	10	15	10	13	15
CTTCAGTTTACGTCTC	alt_5725_new	6	9	5	2	9	4	12	2	6	6
TCTGTGGCGTTTACCT	alt_5725_new	13	13	9	11	10	5	12	6	13	11
TCGTAATTTAGATTAT	alt_5725_new	0	0	0	0	0	0	0	0	0	0
TTGACGTATGTCATCT	alt_5725_new	0	0	0	0	0	0	0	0	0	0
GGTTCGTATCTAATAG	alt_5725_new	13	11	11	5	12	4	11	6	19	6
GTTGTATACATGCGTT	alt_5725_new	10	20	13	5	25	5	22	9	9	14
CCGCTGCATCCTACGT	alt_5725_new	1	11	10	12	9	13	18	8	23	5
GGTCACCCGACCTAGG	alt_5725_new	15	40	5	12	41	6	39	12	27	10
ACTCCTGGGATGAGTA	alt_5725_new	46	63	50	36	45	44	55	37	51	22
CGGTGGCAATCATCCG	alt_5725_new	36	56	91	50	91	66	65	38	77	42
AAGTGTGTTCTCCTTA	alt_5725_new	10	26	20	11	25	12	31	14	21	12
TTTTGTTTACTACGTA	alt_5725_new	1	7	3	4	2	0	8	1	11	6
ACCGCGCTCTCGTCGT	alt_5725_new	26	57	48	24	56	26	42	32	64	28
GGGGTCCCAATGTTAC	alt_5725_new	16	45	33	33	45	17	41	25	50	24
AAGCTTAGGTTTATGA	alt_5725_new	50	75	62	48	84	49	79	34	89	47
TCTGGCAGCTAAGATC	alt_5725_new	0	0	0	0	0	0	0	0	0	0
CATGATGCTTGCACGG	alt_5725_new	26	54	31	30	36	22	47	29	45	24
ATTTCGATCCTGATAA	alt_5725_new	0	0	0	0	0	0	0	0	0	0
TCCGTTATGCTTATAG	alt_5725_new	16	32	22	16	40	15	20	17	27	13
GCGGATGTTAATGGCA	alt_5725_new	0	0	0	0	0	0	0	0	0	0
AAACTATACTTAAGTC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GACTCCCCGCTTCGTC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GAATGGTTTTAGGCGC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
CTCCGGTGCCCCTAAC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GGATTAATGTCTAGAA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
CCTAACACAGAATTAT	ref_2543_missing	0	2	0	0	3	0	4	0	3	1
GTTTGCACACTACAGA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
AAGGCTATGTGTAGCA	ref_2543_missing	10	9	7	8	7	6	10	11	15	15
TATAAATGGTATGGCA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCGCTTTAGTGA	ref_2543_missing	2	2	0	0	0	2	0	0	1	2
TCCTCCACGACTCAGA	ref_2543_missing	2	2	2	7	0	1	9	0	0	4
AGGCGATGTCGTCTCT	ref_2543_missing	6	9	4	4	1	1	3	1	4	3
GTCTATATCCTTTCCA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
ATAACGCTATTTTCAC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GTTTAAGCAGTTATCG	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GTAGTCCATTTACTCC	ref_2543_missing	41	60	60	58	90	45	65	35	100	39
TTCTAGAGACGTGTTT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TTACTCCCCGCCAGGG	ref_2543_missing	0	4	1	1	3	0	5	1	0	0
CAGATCTCTGCGCTCC	ref_2543_missing	6	7	10	5	5	4	9	7	15	10
ATCATATCTTGCGACG	ref_2543_missing	0	5	3	2	1	2	1	0	2	0
CCGCATTCGGTTAAAG	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TATATTATTTTACCTC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
AAGCCACACAGTCTAT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
CCACCTACCTATAACT	ref_2543_missing	1	1	0	0	0	0	1	0	0	0
TCTTTCCCGTAGGTGG	ref_2543_missing	1	3	1	5	2	1	4	2	0	3
CATTTACCATCTGAAA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TGCTTTGTTGGGTTCT	ref_2543_missing	3	4	3	4	7	3	2	5	8	1
CGTTCTATAGTCAAAC	ref_2543_missing	6	12	8	12	7	4	11	6	8	3
CATTGCTTTATTGTTA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TCCATCTCACGTTGTA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
ACGACACCCGTCGTAT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TTGTGCAGGTTCGTTC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TTGAATGATCTTCGCC	ref_2543_missing	2	2	6	2	2	4	1	4	4	4
TGCTATCGAATTTTTC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
CTGTGAGTCTTCATTG	ref_2543_missing	0	2	1	0	1	1	1	0	2	0
TTCTCATCATGAGCCT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TTTTTATAAATGGCTA	ref_2543_missing	12	8	6	3	4	4	5	4	6	2
AGTGAATAAGTGGAAT	ref_2543_missing	33	28	37	33	47	37	28	25	39	27
GTCACACTCTACTCAG	ref_2543_missing	5	5	10	6	4	3	5	2	5	2
GACAACTTCTTAATGT	ref_2543_missing	14	26	20	21	35	9	33	15	18	17
CATTCCCCCTATATGC	ref_2543_missing	24	26	24	10	33	10	36	19	28	9
GTTTGAGTCCTAAACC	ref_2543_missing	2	1	3	3	3	0	0	1	5	2
AGAGTTAGGCCTACGT	ref_2543_missing	14	22	16	9	23	20	27	16	21	12
GTTGTTGTAAACCACG	ref_2543_missing	26	20	25	18	20	16	28	12	23	7
CTTACGAACTATAACA	ref_2543_missing	3	4	6	5	11	5	6	4	2	3
TTGAGCTTTACGCCAT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
CGCTGGTTGTGTAGGC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TGCTCATCTTCGATCT	ref_2543_missing	6	10	9	4	2	8	9	5	1	3
CCCATCGCTCTGAATA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
ATACAAGGTTCTTGTG	ref_2543_missing	0	3	0	1	0	2	1	0	1	0
TCCAGTCATTTTTTTG	ref_2543_missing	1	1	0	0	1	1	0	1	0	0
TCCTATAGAAGCGTAT	ref_2543_missing	9	13	9	16	15	8	13	7	15	16
TTATACCTAAATAACA	ref_2543_missing	1	2	3	3	4	1	0	0	7	4
CGTCTAAGCATTATTC	ref_2543_missing	13	10	19	14	15	7	18	15	24	8
GACATCTATCGTCTAC	ref_2543_missing	2	1	4	1	4	4	1	3	4	0
ATGGTGTTTCCATCCA	ref_2543_missing	17	17	5	8	10	8	11	10	8	9
ATTCCAATACCAAATA	ref_2543_missing	7	4	4	3	1	0	2	1	5	2
AATGGGGTTAGTTTAC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GTGGCCTCGATACGTG	ref_2543_missing	0	1	1	1	3	0	1	2	3	2
GTTTCTTCCGCATTTC	ref_2543_missing	9	13	13	9	8	4	3	7	9	4
GTTGTATAATATCTCG	ref_2543_missing	0	1	2	7	3	2	1	2	4	2
CAACCCATCTATCCGT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
CCCATGTGTCTCCATT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GAGACCCTTGTAACTT	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
ATGGGAATAGTTTATC	ref_2543_missing	13	25	29	13	22	20	19	21	40	8
GCCTATCCCTAGGTGC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GTTTAGTGAAGGGAGA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
ATCCCAAAATGGCCCA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GCGGTAGCTATCGGCC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TGAATCCTGGAATTCG	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
TGGCGGGCTCTGTACA	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
CGCTCTTATTTATTCC	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
GACCGCAGTTGTTCGG	ref_2543_missing	0	0	0	0	0	0	0	0	0	0
ATCGTTTTCGGTTTGT	ref_3700_missing	0	0	0	0	0	0	0	0	0	0
CCCCCTGTTTTCTCCC	ref_3700_missing	208	118	247	214	119	216	114	219	146	194
AAGGGCTTCATATTAT	ref_3700_missing	79	55	121	74	44	82	71	92	52	77
TTTGGGTACCCGGGTG	ref_3700_missing	0	0	0	0	0	0	0	0	0	0
CACTAGAATAACTGTG	ref_3700_missing	37	46	69	47	35	41	51	47	41	35
TCCGGCTTTATGGTCT	ref_3700_missing	37	35	40	32	26	36	29	33	40	27
TGTTAAGTTTCTTCGC	ref_3700_missing	68	34	75	60	44	74	39	49	42	43
ACCGCATCCGCCTGTA	ref_3700_missing	21	6	24	14	8	16	10	10	7	11
ATCGGATCGGATGTTG	ref_3700_missing	0	0	0	0	0	0	0	0	0	0
TTACGCCATTAAAGGG	ref_3700_missing	76	50	78	75	57	68	38	76	39	56
CTGGCCCCGTGTTAAC	ref_3700_missing	15	7	23	19	17	11	7	5	13	15
AGTAATCTCCCGAGGG	ref_3700_missing	0	0	0	0	0	0	0	0	0	0
AACTTTCGAGTTGGTG	ref_3700_missing	20	11	25	20	14	21	11	12	15	24
TTTGGTCGCGGCTTTT	ref_3700_missing	146	94	193	153	100	131	91	146	115	142
TTATTGCGGTGGGTTC	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGCTCAGACGCGG	alt_959_reverse	123	58	142	122	52	102	52	107	69	94
GGGGTGTGGGACGACA	alt_959_reverse	57	38	65	42	25	41	31	54	22	40
GACTTTCTGTGCTATT	alt_959_reverse	26	19	34	30	23	19	30	34	20	28
TAAGGTCCCCATATAG	alt_959_reverse	71	37	77	76	32	62	34	67	48	70
TTGGTTATCCGTTGGC	alt_959_reverse	96	63	109	113	73	94	57	96	64	82
ACTAGTTCCGACCGCA	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
ACTTGACGAGTGACAA	alt_959_reverse	37	26	58	49	37	42	31	53	23	34
ATCGAATGGTAACGAT	alt_959_reverse	28	18	41	31	26	21	30	26	22	28
TTATATCAATAAGGCT	alt_959_reverse	73	32	81	63	51	86	36	73	51	56
ACTTCTTCGAGTGCCG	alt_959_reverse	50	49	86	60	46	53	54	54	39	50
ACGTATAGTATAGCCA	alt_959_reverse	11	7	12	19	6	16	4	6	6	10
TATTAATGAGCCTCTG	alt_959_reverse	89	35	125	97	53	77	60	81	55	102
GAGTATTATGAATTTT	ref_959_reverse	190	106	226	171	100	163	86	182	114	156
AAGGGTTGGATCTTGC	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
TGTTACGAGAGACATA	alt_959_reverse	12	4	10	12	3	13	17	10	7	9
CCATCATGCTTCTAAA	alt_959_reverse	57	51	61	51	18	48	37	52	26	47
ATTATTGTTGCCATTC	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
CCTTATGGGTAGGGTA	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
TTACTTCGCGCGACCT	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTACCGACTGCTC	alt_959_reverse	50	37	84	87	46	69	56	69	49	59
CGACAGACAATGTTTA	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
AATTGAAACGCACCCT	alt_959_reverse	117	77	158	119	57	99	69	97	56	100
ATATGCAGATGTGCCG	alt_959_reverse	123	76	135	131	75	118	85	102	84	121
GACTTGCGGGGGTCTG	alt_959_reverse	24	13	31	32	10	17	10	13	10	22
GGCGGCCCCACCTTGA	alt_959_reverse	13	11	19	14	11	14	5	19	13	18
ATCCAACAGTTGCTAA	alt_959_reverse	3	7	9	18	1	7	14	13	15	14
CCTGGCACACTGGGAA	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
CCGATCTGTTAGCTGT	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
TGCAACTCCATAACCG	alt_959_reverse	75	39	81	48	50	61	52	61	35	51
CTATTCTATCCCGTAG	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
TCACAGCGGCGTTAGC	alt_959_reverse	43	26	54	69	52	47	29	48	17	31
CTAGCTCGTAATTGCT	alt_959_reverse	10	4	13	3	9	6	5	7	4	7
TTCAAGAGCGTGATGT	ref_959_reverse	16	7	27	17	8	26	14	15	11	18
TCCGCTTAGATAATTG	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTTATTAGTTATT	alt_959_reverse	28	24	33	29	21	26	23	33	20	20
TAACGCTTAGGGATTT	alt_959_reverse	111	50	104	90	44	83	53	80	63	86
GCATCCCTTGACCGTA	ref_959_reverse	263	106	303	283	121	242	123	234	111	215
CTACTTTCTGCAGAAT	alt_959_reverse	3	3	4	6	2	2	0	6	2	1
GTGACCACCTTGCAAC	alt_959_reverse	30	20	42	32	16	28	12	20	23	33
GCTTACATTGGCCACC	alt_959_reverse	40	31	32	44	26	36	36	39	32	36
TTCACGTGCGTAACAG	alt_959_reverse	68	38	93	85	41	72	43	68	61	59
ATCTGGTATTTAGTAA	alt_959_reverse	1	0	0	1	2	3	0	0	0	0
TGCATTTTCCCTAATT	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
TATCCACTCAGCGTCC	alt_959_reverse	77	20	83	62	33	45	44	63	38	56
GCTACTTGGTCTCCTC	alt_959_reverse	11	1	7	7	3	8	7	8	3	2
ACATCCTGGTGTGATT	alt_959_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCACCTGGCACCG	alt_959_reverse	290	174	352	314	165	282	171	287	149	248
GGACGGGTATAGGTTT	alt_959_reverse	43	28	53	42	34	50	22	43	20	31
TTGGTTATCTTACTAC	alt_959_reverse	24	21	27	21	17	26	16	13	19	22
CTGCATAATTTGTACT	alt_959_reverse	78	49	77	84	42	81	56	74	54	91
ATGCCGGCGAAGTTCG	alt_959_reverse	13	6	10	10	4	5	4	11	0	4
CATTTGTTACTTCGTC	ref_5836_new	26	25	25	29	26	19	34	22	36	22
ACCGTGTGGTACTCCA	ref_5836_new	0	0	0	0	0	0	0	0	0	0
GTTACTGCCTAGGCCC	ref_5836_new	36	18	37	32	32	25	30	22	20	24
GACTCGGAATTTCAAG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
TGTCGGTGCAATTGTA	ref_5836_new	75	54	58	56	59	57	55	37	76	47
TTACTGTTTATGATCA	ref_5836_new	0	0	0	0	0	0	0	0	0	0
TAGTGACTTCTTAAGT	ref_5836_new	42	39	33	40	57	41	42	36	57	33
TCAAATTAGTCTTGTG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
GTGTGTCTTTTCCAAA	ref_5836_new	17	12	13	7	15	20	27	18	21	9
ACTCTGGAACAACGCT	ref_5836_new	2	5	7	7	5	5	6	2	3	5
CGCTGTTCAGGCATCG	ref_5836_new	100	89	111	95	92	114	103	102	103	101
GTATCTCTAATCAACT	ref_5836_new	0	0	0	0	0	0	0	0	0	0
TACAGCATTTCTCTGG	ref_5836_new	20	13	11	15	15	15	15	13	16	16
ACTTATAATAACACCG	ref_5836_new	64	66	93	59	65	78	73	51	70	51
CCATCGGTAGGTTATG	ref_5836_new	16	18	30	20	16	17	11	17	13	9
ATTGGGTGTTATGATA	ref_5836_new	23	22	28	26	19	21	30	17	15	33
AGACGATTGCTCTTCG	ref_5836_new	60	61	107	67	80	56	77	73	83	69
AATCAGGGCGTCCGGC	ref_5836_new	11	4	8	10	7	12	2	11	11	6
CAGGTGATTCTTACAA	ref_5836_new	3	4	4	2	3	1	3	1	5	2
GGGACTCCTTCATCGA	ref_5836_new	96	76	102	122	84	115	65	78	74	74
CTCATACCAGTCTTGC	ref_5836_new	0	0	0	0	0	0	0	0	0	0
CCACTTTTACCACCGA	ref_5836_new	4	5	3	6	0	2	4	5	2	4
ATCCATGTTACGTACA	ref_5836_new	0	0	0	0	0	0	0	0	0	0
GCACCTGCTCAGTTTG	ref_5836_new	28	38	33	24	24	25	40	29	39	23
AGCGCGCTAATTTTGA	ref_5836_new	0	0	0	0	0	0	0	0	0	0
CAATTGAAACCTTTTT	ref_5836_new	30	31	21	22	28	31	33	28	24	22
GTTAGCTTACATTATC	ref_5836_new	10	17	7	18	11	25	25	7	13	15
AAGTATGACGCCCGGC	ref_5836_new	0	0	0	0	0	0	0	0	0	0
TCTGCACCAACAATCT	ref_5836_new	42	39	72	50	45	54	71	46	51	52
TTTCAATGCCCCATTG	ref_5836_new	119	119	167	131	104	130	120	117	118	93
TTTATGCACAGCCAGC	ref_5836_new	50	61	70	89	54	70	67	56	49	42
TCTTAACACGTAGTAG	ref_5836_new	465	425	569	445	369	436	426	370	430	401
TTAACTGTGAGGGTTT	ref_5836_new	0	0	0	0	0	0	0	0	0	0
ACAACCTTTCGCCGTG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
CTGTGCCATATATACT	ref_5836_new	69	78	76	66	68	66	73	70	95	60
GGTGATATACCTGTTA	ref_5836_new	0	0	0	0	0	0	0	0	0	0
CTCTGGGCGAATTAGG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
ACCTGAGCTGTCTAGT	ref_5836_new	39	57	58	48	56	52	44	42	43	46
TGAGCTATTATACATA	ref_5836_new	20	26	50	30	39	24	33	33	53	28
CACATGAGCTGTGATC	ref_5836_new	13	14	23	9	7	15	15	13	21	11
TCGATTTTCGTTTCCG	ref_5836_new	485	408	545	428	370	432	479	347	454	373
ACTGCGTCCTGCATGC	ref_5836_new	0	0	0	0	0	0	0	0	0	0
ATTCAGTCAAACCCGA	ref_5836_new	45	46	54	33	35	52	47	33	30	37
ATTCAATACGCGCTTT	ref_5836_new	0	0	0	0	0	0	0	0	0	0
TTGAAAAAGTCTAACA	ref_5836_new	5	2	3	2	3	3	5	2	1	2
GGGTCTCCACTAATTG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
TTATCTATGCAGGGTG	ref_5836_new	7	3	4	0	7	7	4	1	4	6
GCTCGTCCCCACTATT	ref_5836_new	15	24	23	18	30	21	30	26	17	22
GCGGGGCGAACGACGG	ref_5836_new	52	39	47	46	39	48	33	37	35	50
ATTTTGAGTGGACGTA	ref_5836_new	121	118	117	123	143	82	123	95	127	88
CGCTCATGGTAATTAA	ref_5836_new	23	25	47	28	34	21	35	27	34	28
CAGGCTTCTGTTTTTG	ref_5836_new	47	36	55	47	39	49	21	40	38	27
CTCACTTCCTTTAAGT	ref_5836_new	0	0	0	0	0	0	0	0	0	0
CTTAAACAAGGGAGCC	ref_5836_new	4	4	7	8	1	2	4	7	4	3
TGATTGGTATAGGGCT	alt_5836_new	27	16	22	25	21	18	18	15	19	16
CGCCTATGAAGTCCTT	ref_5836_new	5	4	13	6	3	1	5	7	15	13
GTTACATTTTCATGAC	ref_5836_new	14	11	19	6	8	13	13	13	9	17
TTCGCCTGGTACCTCT	ref_5836_new	0	0	0	0	0	0	0	0	0	0
GCCATGCCAGAACGGG	ref_5836_new	12	23	23	25	35	16	19	19	20	19
CGCGACTCCGATAATT	ref_5836_new	68	59	71	73	56	51	59	51	56	60
CGCTACGTCGACTTGC	ref_5836_new	44	34	48	55	37	38	38	31	51	33
CGTCTATTCCTAGGTT	ref_5836_new	11	13	18	7	16	9	15	20	12	8
AGCAATTGCCCGATAT	ref_5836_new	0	0	0	0	0	0	0	0	0	0
CTGGTTATGCCGTGTC	ref_5836_new	14	10	13	13	17	12	16	13	24	17
TTAGGGTATTTCTGCG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
AGCTATCGAAGTTATT	ref_5836_new	38	32	47	37	31	31	43	38	45	37
GAGAGCGGGTAAGTGA	ref_5836_new	13	16	25	22	26	26	12	16	16	13
CTTGTGTCATTTTCTT	ref_5836_new	5	8	12	5	2	1	13	7	5	2
TTCACCGTCATGGAGT	ref_5836_new	54	69	52	61	70	60	78	41	73	48
GTTTACATGTCCGCAG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
ATAATTCAAGTTTAGG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
CAATTCAGGTACCATC	ref_5836_new	0	0	0	0	0	0	0	0	0	0
GCGGTGCTGACATCCG	ref_5836_new	112	106	94	91	124	87	112	102	116	114
TCGCCACATGTCGCCA	ref_5836_new	40	45	57	52	52	46	43	42	53	31
TTAAAGATGACTATTG	ref_5836_new	4	4	5	5	10	8	4	4	2	4
TATGTCGACAAAAATC	ref_5836_new	27	25	21	21	13	14	20	18	16	20
TTTGGTGGGAGTTGTC	ref_5836_new	16	17	17	15	15	22	16	7	16	10
ACGCTGCTTACCAGTC	ref_5836_new	31	26	41	30	33	20	24	29	21	25
TGCTCATTTCTGCGTG	ref_5836_new	20	14	14	18	19	15	16	20	18	12
CATGAGTTGCTCCGCT	ref_5836_new	0	0	0	0	0	0	0	0	0	0
ACGCGAGTCAAAGTAT	ref_5836_new	23	38	36	42	38	17	33	28	38	42
ACCATGAGCATCTCGT	ref_5836_new	29	29	26	15	24	29	19	12	20	20
GTTGACGATAAGGTCT	ref_5836_new	61	49	54	49	48	42	32	42	35	39
GGACCGGGATAGTGCT	ref_5836_new	96	106	106	93	92	87	107	99	102	71
ATTTGTTGATTTGAGA	ref_5836_new	7	6	6	2	6	3	2	3	5	7
TCGGTAAATTAGGACA	ref_5836_new	47	26	52	47	35	37	45	34	46	29
ACTTTTGCTAGTATTT	ref_5836_new	80	76	119	96	79	90	87	82	101	83
GCCAATGCGGCACTCC	ref_5836_new	26	32	44	40	39	31	38	24	31	30
TGGTCCTATCCGTCAT	ref_5836_new	82	76	83	78	68	81	74	66	60	68
GACAAATTGCTTGCAG	ref_5836_new	24	27	31	33	29	23	26	28	25	26
GGCCTATTCTGTTGCG	ref_5836_new	0	0	0	0	0	0	0	0	0	0
TAATTGTCCTAAACAT	ref_5836_new	134	135	177	156	122	136	165	158	118	116
TGCCCCTCAGGGTCTT	ref_5836_new	25	22	26	26	22	21	30	24	27	18
CGGGGTGGTCCCGCGC	ref_5836_new	24	16	29	28	15	16	19	18	25	12
GCATGCAGTGTGATTG	ref_3594_reverse	37	64	52	26	41	39	68	34	75	33
CGGATCTCCGTCTATT	ref_3594_reverse	12	15	20	16	25	13	21	13	16	15
AAAAGGCTTGGCTGAG	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTATAGATATTCC	ref_3594_reverse	34	55	44	31	66	38	47	30	59	35
ATATACCGATGAATTC	alt_3594_reverse	57	85	95	69	80	76	80	65	95	59
TAGGACTCGCTTACAG	ref_3594_reverse	12	12	11	6	9	8	12	14	11	7
TTCGGTGGAAAAGATT	ref_3594_reverse	25	44	39	19	27	30	46	30	44	43
ACGGATCGGCTGCGTT	ref_3594_reverse	64	111	97	73	97	80	93	66	117	80
CCTTAAGTTATCCGCG	ref_3594_reverse	99	283	149	121	299	86	307	82	307	81
AGGAGTCAAGTTGCGT	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
ACCGTCTAGCGAAAGC	ref_3594_reverse	38	48	37	30	55	30	60	43	45	28
GCAAGGGGCGTTTTCT	ref_3594_reverse	46	49	39	44	48	48	63	37	80	36
CCGCGTTAGGAGGAGC	ref_3594_reverse	2	7	3	6	12	6	5	12	12	3
GATCTCAACATTCGAA	ref_3594_reverse	45	69	71	50	70	54	70	46	67	50
ACAACTCGAGGTGGCC	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
GCCTAGCTAGTGTGAC	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGCCATTGGTAAC	ref_3594_reverse	3	3	3	1	4	0	8	3	11	6
TTTCTAACTGGAAGAC	ref_3594_reverse	1	2	5	2	1	4	3	2	6	2
GTCGTCCAGTTTGTCA	ref_3594_reverse	15	12	10	7	13	4	22	9	12	5
GTTGTAGCTCGATTTT	alt_3594_reverse	31	39	32	39	48	51	61	24	59	23
GATTCCTTTTTTGAGT	ref_3594_reverse	20	14	19	18	29	17	25	20	38	17
CACTTATTCTGTGGTA	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
TATATGGCTTCTTGGC	ref_3594_reverse	22	20	28	25	33	23	25	25	27	21
GGCATAATCTCTTGTC	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCCATTGCTGTTA	ref_3594_reverse	16	28	25	13	37	18	34	20	28	21
ACTGATTAGTGTGGCC	ref_3594_reverse	1	10	3	4	7	5	11	4	7	3
ATGTGATGTAGGCATT	ref_3594_reverse	11	11	19	6	12	7	15	7	16	8
TGATTAGGTTAGATTG	ref_3594_reverse	17	19	20	14	18	18	18	8	18	12
GGTGGGCTCCTTTCGT	ref_3594_reverse	14	24	12	17	18	20	22	10	24	18
TCTTAGACTACGCGCT	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCATCTAGATTCT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCTTTTTAAGTCG	ref_3594_reverse	107	128	117	92	136	120	114	80	161	112
AAAACCGAGACGTCTC	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
CGATATTAGTTTTGAC	alt_3594_reverse	85	96	83	54	92	73	69	60	119	57
CTTTTGTACCGGCGCT	ref_3594_reverse	44	67	54	50	64	48	82	39	48	39
CCTGTTCTCGTACTTT	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
GTCTGTCTATGTTTTC	ref_3594_reverse	28	60	35	49	48	18	67	20	74	39
AAACATCCGTGCCGAT	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCGAAGGTAAATT	ref_3594_reverse	21	32	13	16	25	18	28	10	34	13
TTTCTTTGTCAGGTTG	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGGCTATCAAACC	ref_3594_reverse	1	4	4	1	6	1	7	2	3	0
TCCGCGGGTGGCGCCA	ref_3594_reverse	61	75	80	70	73	87	65	79	81	60
TCATTATTTGCGTTTA	alt_3594_reverse	114	119	134	121	141	108	134	99	140	134
GGGAGGGGAAACTATC	ref_3594_reverse	31	55	35	46	55	29	53	49	55	43
ATTCGAGCTCTTCAAC	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
TACGTCGGCAACCAAT	ref_3594_reverse	51	78	67	47	79	47	85	41	77	42
TGCGTGTGTTCCAGTG	ref_3594_reverse	19	37	22	22	40	22	26	15	35	22
CACCTCATCAGACCAT	ref_3594_reverse	99	118	123	105	116	85	130	101	128	88
ACAAATGTGCCCGTAT	ref_3594_reverse	17	25	15	21	19	14	23	18	24	16
CTTCAGGGCATTGTTA	ref_3594_reverse	23	31	34	29	33	27	42	28	49	30
CCATAATCCTTGTGAT	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGCTTGTCGCCAG	alt_3594_reverse	138	194	210	157	217	148	201	171	218	170
TACTGTCCCGCGTTCA	ref_3594_reverse	16	34	21	18	30	8	27	26	30	20
CCGTTGGTGGCAATGG	ref_3594_reverse	9	27	17	10	23	14	23	8	29	10
CACTTTTCTGCATTTC	ref_3594_reverse	36	23	23	26	33	17	29	16	32	21
GTGTCCAATAGCATTG	ref_3594_reverse	9	16	7	13	19	8	14	7	19	10
CTTTTATCGCGGGCGG	ref_3594_reverse	26	36	36	43	42	31	41	25	63	25
CACTTCTGTGGGCGAC	ref_3594_reverse	40	51	54	48	67	31	49	40	62	34
GAAGGACACCTTTCTA	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
AATACCTAATTTTGTG	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTTATTGCGTGCA	ref_3594_reverse	11	34	23	32	28	12	21	13	27	11
CTGAGATCTCATTCAC	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTTCCTGGGCCCG	alt_3594_reverse	50	72	55	47	67	46	73	38	79	39
TGTTAAAATGTGCGAG	ref_3594_reverse	80	116	117	66	120	90	114	73	117	61
GAGTCCTAGCGTTAGG	ref_3594_reverse	21	32	29	30	48	22	35	15	43	21
ATCAGTAGCAAGGTTA	ref_3594_reverse	5	21	9	7	8	4	12	6	14	2
CAGCAGAATATACCTG	ref_3594_reverse	41	59	42	27	42	39	52	31	56	40
GCACGCAATCAGTGAC	alt_3594_reverse	21	23	20	20	26	22	25	24	23	14
GTTTTTACGAATTTGC	alt_3594_reverse	101	121	88	80	130	83	134	70	147	77
TAGAGACCCTATTTGT	ref_3594_reverse	2	4	4	1	5	7	0	5	1	3
TTGTGTTATGGTTTTA	ref_3594_reverse	8	29	22	11	24	23	26	12	25	14
TGCCACATACCGTCGT	ref_3594_reverse	11	17	13	16	30	12	32	4	22	13
TCGAGTCCACGTCTGC	ref_3594_reverse	12	8	16	15	21	12	12	5	19	6
GAGCTCTTTACGTTGG	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
TGCCAGGGGTGAGGGA	ref_3594_reverse	41	57	62	48	61	41	68	49	56	51
TTCGGTTGTTATCTTT	ref_3594_reverse	8	21	16	8	21	15	22	9	21	10
CCCCGATGCCCTTGAA	ref_3594_reverse	10	32	33	20	39	19	42	23	44	14
ATAGTTGGCTGCCCCC	ref_3594_reverse	13	15	7	13	12	6	18	8	16	12
CGGTCTTCTCATACCG	ref_3594_reverse	24	34	20	13	29	30	27	24	33	12
TCGGTGGGCGCTACGG	ref_3594_reverse	8	13	9	10	19	11	9	8	16	10
TCTCCAGGAGATATTG	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATTCTGCTTGAA	ref_3594_reverse	50	106	71	74	126	71	109	64	133	62
CTGACTTGCGCGTCGT	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
GTTGTGACTAACTTAA	ref_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCGAGTCCTTTGT	alt_3388_fdr	26	30	47	34	35	50	53	35	38	27
TTGCGCTTTAAGCCAT	alt_3388_fdr	86	73	119	105	76	81	86	93	89	69
CCTGGGGTGTATTTTA	alt_3388_fdr	6	5	7	5	9	4	15	5	3	10
TTGGACCAACAATCAA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
ACCGGTTTATGATAGT	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCGCATCTGCGTT	alt_3388_fdr	3	4	4	3	2	5	2	1	3	2
TCGCGCTTAGTCTATT	alt_3388_fdr	14	5	11	9	15	16	6	7	15	6
CAGTACCGATACTTAT	alt_3388_fdr	0	1	1	1	0	0	2	0	0	0
TTCATGATGGCCCCAT	alt_3388_fdr	51	27	41	41	27	40	27	46	25	36
GGTAATACTATTTTCG	alt_3388_fdr	90	63	85	94	80	86	68	74	79	67
CTAAGTCACACACGGG	alt_3388_fdr	69	64	92	62	62	52	54	68	43	54
TATGTTGACAAGGGCG	alt_3388_fdr	15	16	21	14	9	8	8	12	15	8
CCCTGGTTAACGGTTA	alt_3388_fdr	3	3	5	7	6	4	2	4	5	2
GAAGGTTGTAGGCTTG	alt_3388_fdr	70	78	85	86	55	64	86	77	68	59
GGAGTTTAGTCCATTT	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GACGCACTTATTTTTA	alt_3388_fdr	32	41	50	36	41	51	37	35	54	35
AATTTGATTAACATTT	alt_3388_fdr	12	6	19	11	10	5	11	6	18	8
ACCGGTCTCCCCCCGC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTTAGCAGTTTAG	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
CGATACACTTCTTAGT	alt_3388_fdr	31	22	25	19	18	18	32	22	25	18
GATAGCCACACTGTTT	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GCGAGACGGTATCATT	alt_3388_fdr	23	19	40	25	20	21	20	27	27	15
CCCGACATTTGTTCCA	alt_3388_fdr	22	48	29	25	38	33	47	27	46	12
TGCATCAAGGAACCGC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GCAGGTAACACTATTA	alt_3388_fdr	22	19	24	16	17	13	19	18	22	21
CGAACGCGCTTTAGCA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GATTACAAAAGCTAGC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GGGTATCCCTCAGTTA	alt_3388_fdr	26	17	29	19	16	23	16	25	16	11
CCATGAAGTAGACACA	alt_3388_fdr	83	69	132	92	76	85	81	77	97	89
GCTGTTGCGAGACTAG	alt_3388_fdr	33	39	41	27	35	35	34	37	47	42
CTGCGGTCCATTATTA	alt_3388_fdr	10	14	20	10	13	8	21	9	10	15
AGCTTCGTCATGCGTC	alt_3388_fdr	7	5	6	6	7	4	2	3	4	4
ATATTCAAGTAATGCA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
TTGTAGTGGACGTGGC	alt_3388_fdr	62	62	80	90	71	64	66	63	63	63
ACACACGAGTTCACTC	alt_3388_fdr	49	43	61	51	46	47	49	38	37	38
TAGGGGTATCGTGTGA	alt_3388_fdr	526	500	654	610	485	605	507	488	498	519
CGTTACGTCTAAGATA	alt_3388_fdr	41	51	74	43	52	71	47	42	47	40
CTCGACTCGCACAGCA	alt_3388_fdr	15	13	20	12	14	14	28	24	18	16
GTGGATTAAGTTGGAT	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
ATTGCAGGCCTTCAAT	alt_3388_fdr	39	45	45	46	45	33	33	41	42	40
ATTTGATAAATGGATA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
TTTGAAAGTGTAGTGC	alt_3388_fdr	64	51	68	65	48	53	56	44	70	38
AATGCGCAAAGTTGAC	alt_3388_fdr	98	81	173	112	100	132	124	120	96	103
GAATTAATCAGAATAT	alt_3388_fdr	109	54	125	94	73	88	78	62	66	83
TAAGTCCAGCCCAGCG	alt_3388_fdr	18	16	19	12	25	11	13	17	16	10
ATTCTCATACGAACGT	alt_3388_fdr	19	14	23	21	13	18	13	21	14	10
CATTGTGGCACTAAAT	alt_3388_fdr	66	52	66	56	53	51	51	54	71	40
TGCAATTGTGCGCATG	alt_3388_fdr	36	30	31	25	29	30	34	29	25	39
GTATTTATTACATTTC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GTCAGAGGGACTCTGA	alt_3388_fdr	12	15	23	22	33	19	28	28	30	28
TAGTGCAGGTTCACGT	alt_3388_fdr	65	46	78	85	58	75	57	71	59	60
TTTACCGTGTATCTGA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAATTGTCTTCCA	alt_3388_fdr	16	20	18	9	14	12	5	13	8	14
ACTCAGCGAGGTAGAG	alt_3388_fdr	42	40	47	51	49	40	34	30	42	41
GATTACCGTTCTTTTT	alt_3388_fdr	24	18	43	26	29	29	20	22	23	19
AGATAGCCTGTTGCGT	alt_3388_fdr	374	354	491	428	426	402	387	383	405	339
TGCTCCCTCGAGAAGT	alt_3388_fdr	70	56	94	87	61	60	69	97	78	92
TTTCCTTGCCACATAG	alt_3388_fdr	14	11	11	10	11	19	14	13	8	8
CCAGTGGTAAACTGCT	alt_3388_fdr	13	32	7	11	34	4	14	4	12	7
CGAAGCTATTGCTAGC	alt_3388_fdr	122	104	159	109	87	103	106	107	105	112
ACCTTGGATGACCCGA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
ACGTAAGTGTGATCAC	alt_3388_fdr	89	84	95	107	104	96	98	86	111	76
GGAACCCTTAAGTGAA	alt_3388_fdr	25	29	44	44	30	34	33	23	16	37
CGTGCGACGATATATC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGTTGACAATCA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTGTGTCTCCATA	alt_3388_fdr	5	5	8	6	6	6	3	6	8	2
GTTCGGCACTTATATT	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
CTTATGCGGAAGGATT	alt_3388_fdr	13	14	16	16	18	17	9	18	12	18
TGGATAGTGGCGATTG	alt_3388_fdr	55	60	94	75	59	70	71	52	72	66
AGAGTGTGGTAGACTG	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTCTTGAGATCTA	alt_3388_fdr	19	13	18	10	10	10	10	13	19	8
ATCCTTTTTCACTACT	alt_3388_fdr	4	9	10	6	5	11	14	6	10	11
TGACACATCATTTAGA	alt_3388_fdr	22	15	29	30	26	13	16	13	26	28
TCACTTGCTGGAAATC	alt_3388_fdr	5	3	10	10	4	3	2	5	6	10
ATCCTCTTTTTATCCT	alt_3388_fdr	48	39	66	55	30	38	46	35	34	39
CACAATGTGTTTAACG	alt_3388_fdr	36	47	60	56	41	39	35	41	44	40
CTTACCTGCAAGGACA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGGATATTCTTCC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
TGATTGACCATGCGAA	alt_3388_fdr	141	157	170	149	126	145	136	165	134	137
GATCTGATCATGAATG	alt_3388_fdr	43	34	52	34	37	48	32	52	27	26
TTTTGTACTGGTTCAG	alt_3388_fdr	251	213	346	306	264	255	235	240	260	211
ATACCCATAGTGTGAT	alt_3388_fdr	20	18	31	16	19	20	24	16	21	28
GTACCCGTGATTACGT	alt_3388_fdr	56	30	69	52	28	58	30	50	32	58
AGGAACTCTAAGCGCC	alt_3388_fdr	1	2	2	3	1	1	4	1	1	1
GTGTACAGGGATTCTG	alt_3388_fdr	45	51	77	57	61	59	47	61	61	43
TGGCTCATTTGTGTTC	alt_3388_fdr	37	42	39	36	27	43	36	28	39	34
GACGTGTTCTCTATTT	alt_3388_fdr	36	28	36	32	21	45	19	21	25	21
GATGATAGAAGTTCAA	alt_3388_fdr	81	69	123	81	56	72	64	63	63	65
TTTGTTATTCTGTCTG	alt_3388_fdr	36	26	39	35	38	23	38	33	38	30
CTCTCTTTCATGATCC	alt_3388_fdr	111	88	123	102	94	105	105	124	89	94
TGAAATGTCTGAACCG	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
ACGTATCCCTATGCTG	alt_3388_fdr	31	37	43	37	30	32	28	36	37	40
TCCATCTGGTTTCTAC	alt_3388_fdr	166	151	208	186	150	164	168	166	176	166
TCCACTTATCGTCCAT	alt_3388_fdr	23	21	30	25	39	29	17	29	30	16
TATAAAAGCTTCGATT	alt_3388_fdr	11	6	17	4	9	5	8	10	9	10
GACACTATTTGTTATC	alt_3388_fdr	15	21	20	15	17	18	17	18	17	14
CAAGTCCTCCTTATGG	alt_3388_fdr	37	42	41	43	39	37	26	36	30	26
GATGGATTCTCCTGAC	alt_3388_fdr	142	123	212	201	161	193	154	158	156	158
GATGTTCGCCATGCGG	alt_3388_fdr	49	41	71	67	44	56	41	60	50	52
TCTTCATTTGAGCGTC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
ACTGTGTATGCGTAAG	alt_3388_fdr	1	6	1	0	3	1	5	0	3	3
CTAGAACCCTAACGCC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GTCATCGTATGCTTCC	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGCATGTTAAGAC	alt_3388_fdr	48	69	56	72	47	56	50	39	56	52
GTGCAGTATTGTACGA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GCTGATCCCGAGCTCC	alt_3388_fdr	22	34	39	27	32	24	32	41	27	33
CTAATTGGCACTCAAG	alt_3388_fdr	1	4	5	5	3	4	2	0	7	2
CGATAGATTGAAATGA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTATTGGGGGTGA	alt_3388_fdr	53	45	66	69	46	56	65	55	82	61
TCTCGACGGGTGAGTG	alt_3388_fdr	58	59	81	59	65	55	73	80	45	65
GTCGATTCCAGCATGC	alt_3388_fdr	123	117	163	120	103	125	126	132	133	130
ATGGTCCTTTATCCTA	alt_3388_fdr	3	6	3	8	0	3	2	5	2	1
CTATGAATCCCCTTTA	alt_3388_fdr	61	44	74	57	42	41	53	50	41	44
GGTTATGAAGCGTTAC	alt_3388_fdr	31	21	26	36	27	22	25	27	23	28
GTATGGGGTGCAAGCC	alt_3388_fdr	51	49	91	52	38	42	45	47	59	43
TCTCATTGCTGTACGT	alt_3388_fdr	33	27	42	39	31	30	37	33	25	21
TACTGGTTAGATTCTG	alt_3388_fdr	32	21	39	25	26	26	39	30	41	26
AGCCCAGGCCCCCATG	alt_3388_fdr	37	25	45	40	25	32	17	32	33	29
GTGTATTATGTATACC	alt_3388_fdr	1	2	5	2	3	3	3	3	3	3
TAAGCCTTATGAAGGA	alt_3388_fdr	68	68	108	67	71	70	70	78	96	58
GTAAAGACGCTCGTCT	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
ACCACAGTCAGGCGTG	alt_3388_fdr	51	64	55	53	50	55	65	51	72	49
CGTGTGCATGGGCACG	alt_3388_fdr	10	14	8	10	8	8	6	7	10	4
GGTGCCCTGTGTCATA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTCGTCTAACCTT	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
GTTAATTCCTCTGCAG	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCTTGTTCATTTG	alt_3388_fdr	52	28	40	32	31	30	34	30	35	33
TTGTGATTAACATTAG	alt_3388_fdr	12	19	19	27	16	16	18	11	24	14
GTGCCTTTGCACTCCG	alt_3388_fdr	29	32	49	29	37	33	26	35	32	28
TTTAGTAGTCGGTAGA	alt_3388_fdr	0	0	0	0	0	0	0	0	0	0
CAAATCCTTTTTCCAC	alt_3388_fdr	117	86	153	133	102	110	97	137	112	86
TTCCATATCGGCCAAA	alt_3388_fdr	80	59	72	60	58	59	75	58	63	78
CTATATATGCCTACAT	alt_3388_fdr	26	28	35	33	18	26	27	20	30	25
AGCTGTTACACACGTA	alt_3388_fdr	117	225	180	135	255	124	256	133	255	112
AGATCTTTAAGATTCG	alt_6078_new	174	221	214	186	230	153	210	161	200	144
TCACGAAACGCCTTTC	ref_6078_new	17	16	19	14	18	20	14	18	20	10
GGGCGTCGTTTTTTCG	ref_6078_new	0	8	10	5	3	2	5	1	4	1
TTTTTCTCTCGACTCC	ref_6078_new	0	0	0	0	0	0	0	0	0	0
ATTGTAGCAATTACCT	ref_6078_new	0	0	0	0	0	0	0	0	0	0
AACACTCTACGCTGGA	ref_6078_new	29	54	32	25	49	17	42	30	44	33
CAGTTTTTTTCTCTAC	ref_6078_new	30	42	25	26	41	25	31	25	39	35
GCGGTTTACTTATGCC	ref_6078_new	20	45	15	19	37	19	39	17	38	16
CGGTATGCTGAGTCAT	ref_6078_new	10	11	21	11	12	11	13	9	14	12
GTATAAACCTCCAATC	ref_6078_new	109	162	147	112	152	91	149	102	157	106
ATTCATCACCGTAGCG	ref_6078_new	0	0	0	0	0	0	0	0	0	0
TGATTTTCATTACTAT	ref_6078_new	10	5	11	10	10	8	10	8	7	7
CACTCTTCGGTACATC	ref_6078_new	54	52	57	45	61	44	59	40	84	34
AGCAAGTCTGGGACAT	ref_6078_new	15	7	11	9	14	12	16	13	17	7
TTGGCCGCTAATATTA	ref_6078_new	16	27	26	29	37	19	30	16	34	19
TTAATCCCAGTTGGTC	ref_6078_new	39	43	52	62	44	22	40	31	71	47
TCCTTTATAGCTACGA	ref_6078_new	104	138	128	90	145	81	166	99	156	95
TCCCCACGTGGGATGA	ref_6078_new	30	22	32	21	26	21	13	16	31	21
GGACCAACGTAACTTT	ref_6078_new	0	0	0	0	0	0	0	0	0	0
CTATAGCGGTGATGGG	ref_6078_new	5	11	7	8	8	6	4	0	6	5
TCCCCTTCTAAGTGCT	ref_6078_new	22	35	8	10	29	9	24	6	31	9
ATTGTTTTTTGTTCGG	ref_6078_new	26	22	29	17	18	14	19	15	17	13
TGGAGACCGGTGACTC	ref_6078_new	17	14	26	26	17	27	17	18	20	14
AAGCATCGCGTCTAGC	ref_6078_new	27	48	35	25	54	31	48	38	53	26
CCAGTGCTTTTACCGC	ref_6078_new	22	46	20	22	41	17	27	28	30	21
CTTCATATGATCCTTG	alt_6078_new	49	35	29	33	33	29	43	25	36	26
ATATTGTGCAATTCAA	ref_6078_new	13	8	16	4	15	10	13	8	7	6
AGTTGTCGATAGCTGT	ref_6078_new	2	2	1	2	0	1	6	0	3	1
ATATTTGTTTTGTATG	ref_6078_new	97	101	81	73	113	72	117	79	122	73
AATACCCTTTGTGTTA	ref_6078_new	16	15	17	20	16	10	19	8	19	13
GGGTACAAACTATATC	ref_6078_new	0	0	0	0	0	0	0	0	0	0
TCCACCTAACTTTTCT	ref_6078_new	11	31	4	13	26	9	30	3	31	7
TAGTACGCTATTCGCT	ref_6078_new	0	0	0	0	0	0	0	0	0	0
ACTTCGTGTCTATTTC	ref_6078_new	107	149	156	118	166	105	161	115	168	100
AGTTAGCTAGCAGCGG	ref_6078_new	53	93	87	75	80	85	108	82	110	70
CAGTAGATTTGGCACT	ref_6078_new	40	75	52	53	54	42	64	35	71	38
GCATGGTATGCATCGA	ref_6078_new	28	27	35	30	38	30	28	30	44	27
GACAGCTTTTTAACGT	ref_6078_new	9	13	11	11	17	5	24	10	13	8
AAACCATGAAAAGACG	ref_6078_new	25	28	26	19	49	26	39	24	55	24
ATAGGTTGACCGCGAC	ref_6078_new	0	0	0	0	0	0	0	0	0	0
CAGCTGCTCTTATCCG	ref_6078_new	8	13	9	6	3	9	6	6	7	3
TTTGTGTACTGTGCAG	ref_6078_new	0	0	0	0	0	0	0	0	0	0
AGGGATAACTTGCGGA	ref_6078_new	0	0	0	0	0	0	0	0	0	0
AGGTCTATAAGACGTC	ref_6078_new	51	72	44	45	76	55	74	49	82	40
CGGGTATTCTTTTCGA	ref_6078_new	0	0	0	0	0	0	0	0	0	0
CTCACGGTGCTTATCG	ref_6078_new	0	0	0	0	0	0	0	0	0	0
CTGCAATACCATTGGC	ref_6078_new	13	17	15	12	15	10	17	7	25	11
TGTTTGTTTTAAGTTA	ref_6078_new	74	105	77	74	125	93	137	71	135	89
AGCTCGACATCATTTT	ref_6078_new	2	2	0	1	1	1	2	0	3	0
ACTGAACTCCCAGGTG	ref_3129_fdr	7	11	23	18	12	17	7	12	11	17
TTCTGCTTACACAATG	ref_3129_fdr	28	14	19	35	23	37	20	27	29	26
GCGCGTAACCGTCCGT	ref_3129_fdr	53	46	69	55	42	45	29	49	55	60
TATTTTGGGTTTGTTC	ref_3129_fdr	71	46	87	69	39	61	46	65	34	70
TGACAGCTCAAATGTC	ref_3129_fdr	67	46	76	61	46	60	49	53	53	43
GCGTGCCCGGTTCTGA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GTTATAGGAGTGGGTC	ref_3129_fdr	71	49	65	71	50	74	46	58	42	56
CCAAGGCTCAAGAATG	ref_3129_fdr	54	49	62	50	33	34	30	47	38	60
AAAAAAAATTCGTCTC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CGACTTAGATTCACTT	ref_3129_fdr	2	2	3	3	7	1	3	0	0	2
CCTGGTGACTGCCCAA	ref_3129_fdr	71	49	76	74	43	70	63	74	52	79
CCTTGCAAAGGGGTTA	ref_3129_fdr	51	40	59	65	49	59	52	66	47	41
CTACCATGATCTTCGT	ref_3129_fdr	87	102	141	130	109	88	106	93	83	109
TGATTCATCTTTTTGG	ref_3129_fdr	79	68	106	97	69	91	76	96	53	79
TATTTTTCCAGGTTCA	ref_3129_fdr	256	171	317	289	162	246	175	239	146	197
TAACAGTGCTGTACGG	ref_3129_fdr	43	18	64	55	41	36	37	45	32	44
TTTCTTAATGACTAGG	ref_3129_fdr	41	16	35	31	16	33	26	27	24	40
GACTGCTCTCGTTTTT	ref_3129_fdr	87	67	120	106	64	101	60	97	64	101
AAAGTCCAAAGGCAAA	ref_3129_fdr	65	45	74	88	43	80	36	53	35	59
CGCAGGATGATGGCAA	ref_3129_fdr	8	3	13	7	2	9	8	11	8	4
CAGCATAATGCCGCTA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
TCTTAGGTTGACCGCT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CACGCACGAACGGTTG	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCATTGAACCTAA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GGACACCGACGCCGAC	ref_3129_fdr	11	6	5	7	3	8	7	4	7	4
TAAGCTTGTGTTAGTC	ref_3129_fdr	82	74	100	101	74	95	73	95	59	84
TCGATCCAGTATTCAT	ref_3129_fdr	35	15	31	28	23	27	14	31	20	37
ATAAAGATCACGTCAG	ref_3129_fdr	77	51	79	65	41	65	48	74	66	27
CTGTTCGAAATTGGTA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CATGGCAAATCATATA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CCATCTGGTTACGGCG	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
TACGTTGAAGCCTAAT	ref_3129_fdr	18	22	15	15	15	13	12	14	11	13
CATTGGAGTCTAGTAT	ref_3129_fdr	86	57	93	92	69	77	54	70	72	78
CATCTGCGCGCCCATG	ref_3129_fdr	38	31	35	27	30	33	21	32	16	30
CGATAGGTGGTTTAGT	ref_3129_fdr	57	40	88	80	42	64	35	71	55	49
TTCTTTTTAGCTCCGC	ref_3129_fdr	80	50	99	95	46	71	60	103	52	77
GATCAGGTTAAAACTA	ref_3129_fdr	47	13	35	37	14	34	20	35	30	35
TTTTGGGACCCCAATT	ref_3129_fdr	200	89	232	229	128	200	102	189	139	188
CCCTATTCTGGTTTCC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
AAGCATTCTCGGGGGA	ref_3129_fdr	70	30	96	82	47	90	40	79	53	77
AGCTTCCTTTGGCTAG	ref_3129_fdr	118	88	119	140	64	109	83	94	83	109
AGTTGACCGCAGCCCC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGCCGTATTGCTG	ref_3129_fdr	34	27	38	30	27	37	29	48	21	42
GTAATCGCGTACAATA	ref_3129_fdr	126	102	135	114	65	88	80	93	104	98
GATTCCTTTTTCATTC	ref_3129_fdr	141	48	172	154	51	127	53	113	74	118
GTCATGTCTAAAGGAA	ref_3129_fdr	55	56	85	76	49	65	35	64	53	74
CCGGCAGTTTTCGACT	ref_3129_fdr	130	75	107	113	65	100	77	105	106	91
ACTTGGGTGTTATACC	ref_3129_fdr	60	54	85	77	65	71	66	81	65	65
TATCATATTGACGCTC	ref_3129_fdr	37	12	31	28	13	25	13	20	23	17
AGTGCAATGCCCTAAG	ref_3129_fdr	23	18	37	23	9	15	17	27	22	19
TCCTAGCGCTATCAAG	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GACGCAGTCCACACTG	ref_3129_fdr	7	2	6	8	4	2	7	11	4	4
GCGCATAACATGCTCC	ref_3129_fdr	19	16	32	17	13	16	9	24	13	10
AAGGGCTTTTGTCCGT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
ATAATTTTCCTCACAG	ref_3129_fdr	17	8	30	19	13	19	10	10	8	21
GCCACTCGAGTCGTCC	ref_3129_fdr	56	47	56	57	33	37	54	49	40	37
AACTTAGGGGAACTAC	ref_3129_fdr	44	32	52	43	32	48	45	51	28	52
ACTGGTGGTAACAGAA	ref_3129_fdr	37	27	49	36	27	48	27	48	29	43
AGTGCGTGGTCCTGCT	ref_3129_fdr	216	124	237	219	147	207	125	173	130	194
AGGTTACGGTCCTACA	ref_3129_fdr	4	6	4	4	1	6	1	4	3	5
TTATCTTGTTTCATTT	ref_3129_fdr	36	33	71	48	12	42	29	43	37	30
TGCTTTGCAAGGCAAC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGCCTTCGGTTT	ref_3129_fdr	55	32	82	67	29	59	22	53	33	56
CCTAGCACGCTAATTC	ref_3129_fdr	211	148	246	211	200	181	147	178	162	183
ACCATGTTTGTTTCCT	ref_3129_fdr	35	16	31	27	22	26	16	29	24	13
GTTCGTGTTCCTGTAA	ref_3129_fdr	179	132	201	212	147	184	145	180	148	169
AAGACTTAAGTGGGCA	ref_3129_fdr	15	14	25	30	17	18	13	20	11	14
ATTAAGGAAATCTACA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CAATCTACTCACTATG	ref_3129_fdr	0	1	1	1	1	0	0	2	0	3
CTTCTGAACGCCCCTT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTCTTCCGTTTAA	ref_3129_fdr	78	57	99	94	46	77	52	68	53	67
TCGAACACGAATAATC	ref_3129_fdr	63	54	99	65	42	62	54	52	80	54
TGCGCAGGATATATAA	ref_3129_fdr	12	1	6	15	7	10	6	9	9	9
TGAGGTGAATTATTAT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTGGACCGGATA	ref_3129_fdr	116	69	120	88	72	84	78	100	78	106
TGTACTCTTTCGCTCA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
TGTACCCTGGGACCTG	ref_3129_fdr	43	30	42	44	39	52	32	41	34	46
CCAGAGTAGAAAGAAA	ref_3129_fdr	6	5	7	6	3	4	5	6	7	6
CCGGTTGTCGACATTG	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GTAGTCCCGGTCTCTG	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CGCTAATCCGGTTTAA	ref_3129_fdr	33	17	45	43	27	43	25	28	21	34
ACAAATCACGGCGTAG	ref_3129_fdr	10	12	14	5	6	16	4	13	3	12
ACACTGACAGTGCGGT	ref_3129_fdr	105	56	133	113	75	96	85	110	71	72
GTCTTACGGGACTGTC	ref_3129_fdr	4	1	4	1	2	3	2	4	1	1
CGGTATGTCATGGACG	ref_3129_fdr	32	23	39	31	14	23	15	36	18	42
TGTCGTGAGATTATCT	ref_3129_fdr	20	16	30	20	9	19	11	16	10	23
AAAATGAGAAACTACC	ref_3129_fdr	85	44	99	77	46	54	41	76	33	96
CACTTGCTCTACCTTA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTTGGTATTTTGC	ref_3129_fdr	12	2	14	15	9	14	5	12	3	10
GTAGGATTTGCAGGGT	ref_3129_fdr	24	15	29	32	10	23	15	25	20	15
GTGTCCCGGTTTAGGA	ref_3129_fdr	8	4	15	16	14	16	16	12	19	14
ACGCAGGGTTCATAAG	ref_3129_fdr	273	197	410	328	200	284	201	276	230	253
CGACGTAATAGAATAA	ref_3129_fdr	94	67	105	93	75	87	71	102	78	75
GTTTTCTGACAAATCG	ref_3129_fdr	15	19	20	23	15	12	11	21	7	19
TTATAGTCCGGAATCA	ref_3129_fdr	4	11	11	9	6	8	12	13	3	11
ATGGAACCGAAAGACT	ref_3129_fdr	15	16	20	14	6	15	10	20	23	7
CATATTTGGGATCGTC	ref_3129_fdr	23	18	38	33	13	39	22	18	12	19
GTATGAAGTCCGCCTT	ref_3129_fdr	24	14	22	23	11	27	4	12	8	20
TTACGTGGGTCAAGTT	ref_3129_fdr	142	105	149	132	115	142	67	124	94	144
ATCCGTACTTGCGTGA	ref_3129_fdr	15	12	19	12	7	14	10	10	14	10
GGGTATACTTAGTACA	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTCGATTGGTTC	ref_3129_fdr	21	39	18	22	44	17	58	16	43	26
CAGTTGGGACAGTAGT	ref_3129_fdr	11	13	15	10	9	7	11	10	15	18
GCGGACCATAGCTGTT	ref_3129_fdr	29	27	45	62	19	43	23	36	34	26
GCACCCTCGACGGCAC	ref_3129_fdr	7	5	7	5	2	7	3	5	5	6
CTCACCTGTCCTGCAT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTAATGGACTTAT	ref_3129_fdr	18	11	18	16	10	18	10	20	12	10
GGGGGCCCTTAGGATG	ref_3129_fdr	140	74	188	158	96	146	87	149	83	149
GAAGCGTCTCTTAGGA	ref_3129_fdr	29	16	34	29	19	29	20	25	16	21
CACGTTACTTCTCCTT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTGTAGACCGTGA	ref_3129_fdr	4	11	5	3	11	11	24	3	9	5
TTTACATGTGTTCCTG	ref_3129_fdr	20	7	14	15	17	15	6	21	14	15
CTACTCAATATTTTTA	ref_3129_fdr	26	11	34	28	12	13	11	28	11	20
TTCATCTTGTGTTTCA	ref_3129_fdr	56	51	68	63	42	52	41	62	33	61
GTTTAGCCCAGGGGAG	ref_3129_fdr	66	44	76	71	42	60	33	64	43	54
CGTCGAAAGATTGACC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CCCTATCTCTGTGCTA	ref_3129_fdr	3	8	8	10	11	6	14	15	16	2
CTTCAGCTTCCGCACT	ref_3129_fdr	88	71	112	114	72	101	77	84	86	95
CTAATTTCGCTCACGG	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCCTTCTTCCCCC	ref_3129_fdr	23	23	19	42	17	28	18	31	18	28
TGTCACACACTGAGTT	ref_3129_fdr	123	78	135	95	75	112	74	100	67	79
CCGTACCACTTTGTTT	ref_3129_fdr	9	12	8	9	12	17	20	19	16	8
CTCTGCCCCGGGTACT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCTTCGTAATGTT	ref_3129_fdr	4	3	1	4	2	6	4	5	6	1
TAGCTCAGAGTCAGAA	ref_3129_fdr	196	137	264	222	150	179	159	189	194	189
TCATGTTTCGCGTTCC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GCTAACCTCTATATTG	ref_3129_fdr	36	27	28	36	26	41	32	39	34	33
ATTTACGGCGACTCTT	ref_3129_fdr	235	127	258	215	154	191	153	193	126	212
TCCCTTTACAACTTTT	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
GCTTATTGCATATCCC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
CGCACTTTTCATCCCC	ref_3129_fdr	0	0	0	0	0	0	0	0	0	0
TTATAGAGTTCTACTT	ref_3129_fdr	27	16	29	27	14	27	11	12	14	23
CCTCGTCCTTTGTTAT	ref_3129_fdr	128	62	131	100	72	115	64	100	71	87
CTCCTGGGCACTGTAA	alt_1253_missing	27	16	46	24	27	30	16	29	25	34
TGCAGCGTTTAGAAGA	alt_1253_missing	103	77	114	95	56	85	56	104	75	70
TTTGCGACGAATTAAC	alt_1253_missing	58	30	76	59	47	48	42	64	44	51
ATAGGTCCGACTTCTA	alt_1253_missing	0	0	0	0	0	0	0	0	0	0
GCGTGTAGATAAAGGG	alt_1253_missing	0	0	0	0	0	0	0	0	0	0
TATGGGCGAACTTCCA	alt_1253_missing	78	60	116	93	59	75	53	74	68	67
TTTACACCTTCGGTCA	alt_1253_missing	15	9	15	15	11	11	15	17	18	12
TAGGCACCACCCGTTG	alt_1253_missing	25	22	44	33	27	30	29	28	30	18
GGGAACTCGGTGGCAG	alt_1253_missing	23	18	30	32	22	26	23	21	30	29
CTTCGGACTGTCTACG	alt_1253_missing	50	48	61	58	51	54	60	53	42	48
GTGCTGGTTTGGTATG	alt_1253_missing	20	24	32	34	28	19	26	27	24	34
TTATTCATCCATTTGC	alt_1253_missing	0	0	0	0	0	0	0	0	0	0
GCGTCTCGTCGGAGCT	alt_1253_missing	0	0	0	0	0	0	0	0	0	0
GCTTGCTCATGAACCA	alt_1253_missing	12	12	12	15	10	12	9	12	14	12
CATAGCTCGCCATACT	ref_2783_upstream	394	381	447	425	454	370	408	401	419	390
TATGCACGAGTCAGTA	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GCATGTTCGGTGAAAA	ref_2783_upstream	18	11	21	6	5	8	10	6	10	7
TCTTCATCATACTGGG	ref_2783_upstream	3	5	7	6	10	3	6	5	2	9
AGCTCTATCTTCAGTT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
CGAATGTAAGACAGAA	ref_2783_upstream	141	159	154	111	136	121	150	126	174	130
TGCCTTAGAGGATTCC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
CGCACGGACTTGGGCT	ref_2783_upstream	10	11	19	14	18	19	18	14	15	14
CGCGCTATATCGTTAC	ref_2783_upstream	38	41	39	42	32	35	50	31	48	25
CCCAAGTTGTCTATTA	ref_2783_upstream	71	113	113	90	119	94	124	99	146	83
ATAGCTCCTTTTTATT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCAATTTACTCTT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GGATTTTCCGATCAGG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GCGTCTTCGAAACTTT	ref_2783_upstream	34	49	44	55	49	32	34	36	32	33
ATCTTTTTAAGGACCT	ref_2783_upstream	4	2	1	1	0	0	5	3	1	1
CAGCTGACGGCGGGAC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCCAGGAAGTTCA	ref_2783_upstream	50	55	55	46	66	33	58	46	53	55
AACTGATTGGGGGCTA	ref_2783_upstream	65	65	96	79	69	63	75	73	64	56
ACATGATGTCCTTAGT	ref_2783_upstream	80	72	108	90	82	76	85	76	92	72
CTAGAATTAACCGTCA	ref_2783_upstream	24	14	15	20	23	26	24	19	25	23
GTCCAGTGCGACCTCC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCGCTTTCCAATG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GGGACATCGCTTTTAC	ref_2783_upstream	11	15	12	10	7	11	9	6	12	12
GTTGTCCACCACCCGG	ref_2783_upstream	18	22	21	25	14	11	16	13	13	17
TTTCTGCGCTGTTGTG	ref_2783_upstream	10	6	10	7	8	11	3	14	15	6
TAGGTTACGAACGGGT	ref_2783_upstream	99	56	100	93	70	93	62	61	71	75
CTTGTTGGGCTATAGA	ref_2783_upstream	1	2	5	5	3	2	7	4	3	5
ACTCTTCCGTCCTCGG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGTAATTGCGTTA	ref_2783_upstream	33	46	33	36	39	27	37	39	28	27
GGAGATTTTGTCAGGT	ref_2783_upstream	34	42	42	34	30	45	42	39	44	36
GAAACTCATGTCGTTG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
ATCAGAAGTCTAGACC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGTGGAGAACCCT	ref_2783_upstream	38	48	67	42	49	35	55	35	62	31
GGCCAATCGCTCTACC	ref_2783_upstream	50	225	97	80	191	77	196	71	222	64
AGCCAGATCTATTATC	ref_2783_upstream	49	59	86	60	42	53	64	42	77	33
CGCCTTTGCGTCTATC	ref_2783_upstream	32	13	46	38	25	20	32	35	28	36
AAAAGGAAACAGGTGG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
AATTAATTCGTCGTGA	ref_2783_upstream	13	5	14	13	8	14	14	18	10	9
GGTACCGCCATTACCC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
AATTAACTGTAGTAAT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTTGGCAGCCTAC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TCACATGTGTTGATGT	ref_2783_upstream	23	15	26	32	18	36	19	13	18	23
TCGACAACTATTGCGT	ref_2783_upstream	174	192	234	221	214	189	200	186	218	183
AAATTTTTTATTACTG	ref_2783_upstream	47	33	47	33	43	36	49	38	27	37
CTTACTTATGCAAATC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GTAGAAACAGGGGAAG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTGTGTCTGTATG	ref_2783_upstream	68	74	61	48	53	67	54	45	60	46
ATCATGCATTAATTCC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGATTGTGCCAAT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTAGCCTTTCTTTAAT	ref_2783_upstream	137	152	213	144	176	141	176	132	178	121
ACTCTTCCGTCCTCCT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TATACCGCATCCGCAC	ref_2783_upstream	6	13	8	10	12	12	5	9	6	9
CTAGATCACGCCTACC	ref_2783_upstream	5	4	10	1	3	6	4	3	5	2
TGTTGTAGCCCCGCGC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TGGTCATCGCCCGCAA	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
CCTTAGTAGGTCAGTC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TGGATATACCGTTTAG	ref_2783_upstream	37	27	38	33	35	61	34	32	38	23
TGTTTAATGGTCCATT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
ATAAGCAGTTCCCAGG	ref_2783_upstream	13	27	30	20	24	23	17	11	16	19
TTTGTTTTGCCTATCC	ref_2783_upstream	20	30	26	27	25	22	28	27	21	24
GTGGCTTCCTCAAGTT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTCTCGAGTAGTGATT	ref_2783_upstream	56	46	53	46	61	43	82	41	69	31
CCAAATGGCGACACCT	ref_2783_upstream	51	53	62	49	52	44	47	47	46	39
AGTAGGACCGTAGGTG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAAGCACAATTCG	ref_2783_upstream	71	65	93	67	63	82	80	54	68	71
TACTGATGCTGGGTAA	ref_2783_upstream	15	11	10	11	5	9	11	10	4	19
GACTGTCGTGCAGAAG	ref_2783_upstream	32	40	53	41	30	30	21	28	40	21
TCGGACTACTAACTAG	ref_2783_upstream	30	34	36	26	43	38	39	32	40	26
TGGGCCCTCTTATGTG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GTATTTCTTCATTTTT	ref_2783_upstream	0	0	0	0	0	1	0	0	0	0
CGCATTGCCAAGAGAA	ref_2783_upstream	2	1	5	2	5	2	5	5	2	1
CACTCACTTCTTTACG	ref_2783_upstream	30	23	26	18	41	9	39	23	36	16
TGAACGGCATTCCTCC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
ATCATCGTGATTAGCC	ref_2783_upstream	43	38	44	40	48	22	37	31	31	33
CATGTATGGGTCGAGT	ref_2783_upstream	13	19	16	14	19	23	17	19	16	11
GGCGGATTCAGGCTAT	ref_2783_upstream	24	23	34	20	19	13	21	8	16	23
AGCACAACAATCTATG	ref_2783_upstream	34	56	51	42	49	26	55	47	45	38
TTGTACGGAGTTGTAT	ref_2783_upstream	56	41	40	65	47	50	59	48	47	27
CGAGCTGGGTTTTGCA	ref_2783_upstream	5	13	3	4	11	1	2	3	8	3
ATACGTAACTCTCTAC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GACGAACAAGTCAAGG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTGACTAACGGTG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAACTGTCCGCCT	ref_2783_upstream	34	27	20	36	21	23	14	20	36	21
TAAAGGCTGTAAGATC	ref_2783_upstream	21	10	15	18	14	15	13	10	24	18
CCCAAGTTGACTATTA	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGCTTCGTCCCGT	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTCACGTTCCATGCAG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
AGTGCCGTGTGTATGG	ref_2783_upstream	19	36	31	33	26	27	30	38	38	31
ATGAGCCTTAGTTTGT	ref_2783_upstream	55	86	102	65	59	62	84	59	91	52
CCTCTGATAAGAGGCC	ref_2783_upstream	151	106	152	172	123	128	130	133	135	130
TATACAGTTAATGGGT	ref_2783_upstream	4	1	6	3	9	6	6	4	9	3
TTAGCCTTTCTTAATC	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCTGCTTCCGCTG	ref_2783_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCATTTCTTTCCT	ref_2783_upstream	17	13	25	21	15	16	13	16	16	9
GAGATAAACTAGCGTT	ref_2783_upstream	25	18	26	21	19	20	41	27	31	19
AGAGGTGGGTACTGAT	ref_2783_upstream	96	92	121	97	100	79	95	94	98	78
TCATGGTTCGGGTATG	ref_2783_upstream	83	93	90	91	105	89	73	110	93	86
CAGTAAGCACTAACCT	ref_2783_upstream	21	21	15	14	14	10	15	18	19	18
TAGTACATTACTGGTG	ref_2783_upstream	26	15	24	19	22	24	22	18	25	24
CCGACCCGCATGGACC	ref_481_missing	3	4	3	4	3	2	2	3	3	1
CTGGGAAACCTGTTCG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TGTCGTTACTGCTGCA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TATTCAACTCGTCGTG	ref_481_missing	6	2	1	3	3	2	2	1	2	1
GTGTCTTTATAAGCTA	ref_481_missing	1	1	0	0	0	0	0	0	0	0
ACACGGGGGAAGGCCG	ref_481_missing	2	4	8	3	9	4	4	8	8	5
ATTGCTGGACACGTGT	ref_481_missing	1	0	1	0	3	0	1	1	1	0
TGTTTCATGAAACTCT	ref_481_missing	1	5	2	1	2	1	1	2	4	2
CCCTACGCCTGGTCTC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CGAGCTGATATACTTT	ref_481_missing	3	5	3	1	1	3	4	3	0	2
GCGAATGCCACGTAAA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GCACATAATCGGGGTG	ref_481_missing	14	5	2	3	5	5	7	11	4	4
CCCATTTTTGGTCTTT	ref_481_missing	4	6	3	1	4	0	1	2	3	1
CTCGTACCTCGTCGCC	ref_481_missing	0	0	2	0	0	2	0	1	0	1
TACGTCCTTAACACGC	ref_481_missing	8	6	14	7	13	2	8	7	2	6
GCTTTACTGCGCGTGG	ref_481_missing	1	0	0	0	1	0	1	1	0	0
CTATCCCAGTTGGAAG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TTGCATCTACAACACC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TTTTTCGCACGACAGC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CAGGGCTTTTACTCGC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TCTTGGTGATGAAGAT	ref_481_missing	2	1	2	1	2	0	1	5	3	2
CACAAGCCGACCCCTG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TTGTCAGAGCGTGATG	ref_481_missing	4	1	11	3	3	7	9	2	7	6
TGCAAGACAGGTTGTG	ref_481_missing	3	7	3	4	4	1	4	2	5	4
AGTGGGCGAATTTTAC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CCGTTATGACCATTTG	ref_481_missing	3	4	6	1	3	3	3	1	5	3
ATTTACTTACGAATTA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
ATTTTTGTTCGAAGGA	ref_481_missing	6	5	3	2	3	2	1	0	1	3
GGAATAAATACAGATT	ref_481_missing	3	5	6	2	3	3	2	1	0	3
ACCTTCCCTTACCGCG	ref_481_missing	4	2	0	3	1	0	2	1	2	1
TTTAGTACAGTAGCTG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TGGGATGCACGTCTAG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CGTTTTTTGCTGTTAC	ref_481_missing	0	0	1	0	0	1	2	0	0	0
TAAAGAATCCCTGTTC	ref_481_missing	5	1	1	2	6	3	2	0	4	6
TTACTGACTATATGAC	ref_481_missing	5	4	14	3	7	8	6	8	7	10
GCCTCTGCGCTGTGCC	ref_481_missing	2	5	4	0	3	1	3	1	3	0
GGGTGGCATTTAAATT	ref_481_missing	5	17	5	7	11	6	8	12	9	6
ATCTGTTTATGGCTGG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GAGCTCTGAGTCCTCT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
ATTTTGCATGGCGGTA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CGGTTGGAACGTATGA	ref_481_missing	0	2	2	2	1	1	1	0	0	2
ATCTTCCGTCTTGGTT	ref_481_missing	2	1	1	1	2	4	5	2	8	2
GCTGTCTGTTCCCACG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
ATAAGCTTGTTAGGCG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CACAGGAATCTCTCTC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GTTTGTGTGTCGTCGA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CGTGTGGACTTGGGAC	ref_481_missing	0	0	0	0	0	0	0	1	1	1
TTCCTGTTCTTTTGTG	ref_481_missing	1	2	2	4	0	1	0	1	1	1
CTCGCTAATTCCGATA	ref_481_missing	1	2	1	0	0	0	3	1	0	0
TGGAGTTCTCTCCTCT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
AGCTACTGCGTCCCAA	ref_481_missing	3	3	0	2	1	1	2	3	0	0
TGTTCTCGGTCGTCGG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CTTGTTCTCTCTACAC	ref_481_missing	2	9	3	3	5	4	9	4	7	6
TACACGATGCATGTTA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TTGGGAAACTTCGGTT	ref_481_missing	3	1	0	3	2	4	2	1	5	1
ACCTCGGAGGAATTTT	ref_481_missing	9	1	7	9	10	6	9	13	5	9
GTTTCCGATTTTTGGG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GTTCAATGCTCTGGTT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TGGTGCCCGATTTATT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TCTCTTCCCTTGCTAC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GCTGACTGTTGCTGAT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GCGTGCAAATGAGTAC	ref_481_missing	2	4	5	2	7	3	2	3	2	3
AATTTCCGGGCTTTTC	ref_481_missing	1	5	6	2	0	3	2	6	1	3
TTGTCCACATACAGCA	ref_481_missing	1	1	1	0	0	2	1	0	0	0
TTTTTGTCTAAGCCGC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GCCGGTTAAGCACATA	ref_481_missing	1	1	0	2	2	0	1	0	0	1
GGAGCTTCGTTTCATC	ref_481_missing	1	1	0	0	0	0	1	0	0	1
ACGTGTTTACAAGTCA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GATGCTATAAAAAGTT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TGTAGGACTCATATCT	ref_481_missing	2	2	3	1	2	4	0	2	2	3
TGTCAGTTATATTTCT	ref_481_missing	14	8	12	10	14	7	12	7	9	5
CAGAGCAGTACCCGAG	ref_481_missing	2	2	3	1	2	4	4	0	1	0
GTCCCTTGTTAAACGG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TCTTCGAAAGAATAAC	ref_481_missing	5	4	2	0	1	7	2	1	2	2
GTCTTTTATCTCTCTG	ref_481_missing	6	5	1	4	4	4	3	6	3	1
GGGCTCCCACTCACGA	ref_481_missing	1	1	1	3	2	1	2	1	2	3
CTACCTTGGCACCACT	ref_481_missing	0	1	1	4	2	1	1	1	1	2
TTGAGGCTCGATGCAA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GATTTCCTTGCATGTG	ref_481_missing	1	1	1	4	2	0	0	0	1	0
AAGTGCCGTATAGAAG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GGTACCCCGGCCAAAT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GAAAGAGCTGCATTCA	ref_481_missing	7	10	7	10	17	10	7	2	12	6
AATGAATTAAAGTAGC	ref_481_missing	4	6	3	2	1	3	4	0	5	1
GGCCACCTGTATAAAG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TTAGCCATCTTAGCCT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
ACTTTCTGTTCAGATA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CTGCACGCACAATAAA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GGGGTACCTCGCTTCG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CCACAGACCTGCTTTG	ref_481_missing	2	0	1	0	3	2	0	2	5	1
AGGCGGCTCCCCCAAT	ref_481_missing	2	1	0	2	0	0	0	0	0	0
ATCACAGGGAGACCGT	ref_481_missing	2	7	3	2	2	3	2	1	2	5
CGTTAGATGTGTGACA	ref_481_missing	4	6	6	9	14	4	13	11	9	8
CCAGCCCTAAGCATTT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GGGGGTCTCATTAGTA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GTTTGTATTTCGGTTT	ref_481_missing	2	5	1	1	6	6	3	4	6	8
ACCTCCGCACGTGGCC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CCTTTACCTGTATCTC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
ACTGCCCTGTTTTAGT	ref_481_missing	2	0	1	0	0	0	0	0	0	0
CTCGTTTCCAGGTCAC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TCGACTCCGGAATCGA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GACCTTGATAGCGATG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CGTGCTTAATTACCCC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CCTTTGGAAGTTAGCC	ref_481_missing	3	0	1	1	2	2	1	1	3	2
AGCAGTTCTTTCGTTT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GCATGCGCTCAGTGCT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GTTGAAAAGTAATACA	ref_481_missing	8	10	10	3	7	10	5	5	5	2
GTGCGACTTTTGCTAA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
AATCAAATGGGCTCAC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TCTCCAACTATTTTCG	ref_481_missing	5	4	8	4	7	1	6	4	4	3
ACGCTATTCTATCATC	ref_481_missing	2	4	4	1	4	4	2	2	3	1
CTGTCTTGTCTGAGCA	ref_481_missing	0	1	0	2	0	0	1	0	0	2
CTCGCTATAAACCTAG	ref_481_missing	0	7	0	0	2	0	4	1	4	2
GGTACATTGTATGTGA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GGACCTACTCTGTGCC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CACCAACAATGGCGTA	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GATCGTCAGATTTGCT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GGGTTTATCAATGATC	ref_481_missing	0	1	1	0	0	2	0	3	5	0
TCTACATCTGATTGGC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TGACCTGTTTTTCCCG	ref_481_missing	3	4	4	1	3	1	4	7	2	1
ACTAGTTTGTAGCGAT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GCACAAGTATTCATTC	ref_481_missing	0	1	2	1	2	1	1	2	2	1
CAGGTCGGTGTTTTGG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
ATCGCTAGTTGTCAAC	ref_481_missing	1	0	0	1	0	0	1	0	6	2
ATTTTTATCTGCGGCC	ref_481_missing	0	4	5	5	1	3	0	0	0	1
GGTCTCTAATACGATT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TGGAGTGTCTACATTT	ref_481_missing	4	0	0	2	1	0	0	0	0	3
CGATTCCCGTCTGGTC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GCTTTAAGTGCGATCG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
AATTTGATTCAGCTTT	ref_481_missing	0	0	0	1	2	0	0	4	1	1
CATTTACCAATTCCAC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CTGTGGTTCTTGCCCT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GTTAACCGTCGTCGGG	ref_481_missing	6	14	2	7	8	7	8	3	7	7
GATAGGGCAGGTCGTT	ref_481_missing	1	2	0	1	0	0	6	2	3	1
TTTTTAAGGACGATAC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
AGCCTTCCGGTTACGC	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TCCAAAAACTGCCTTG	ref_481_missing	5	7	5	1	8	6	6	10	6	3
CACGATCTGGGACATT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
AGAATGGAGAACCTGT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCTTCTCTTACA	ref_481_missing	0	4	5	0	2	0	1	0	2	1
AACCGATACACGTACT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
CTTCGTATATCCTTTT	ref_481_missing	0	0	0	0	0	0	0	0	0	0
GTAAACTGTCGGTATG	ref_481_missing	0	0	0	0	0	0	0	0	0	0
ACCCACCACGTGAACG	alt_5975_new	32	31	71	29	39	33	49	35	57	35
CTATTGTACTATTAAT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TCAATGGTAACATTCC	alt_5975_new	22	18	21	19	21	15	19	13	18	10
GGAGCTATCTGTCTGG	alt_5975_new	11	12	14	13	10	6	10	10	17	6
AGTAGGTGTTAGCTCT	alt_5975_new	30	29	53	24	47	36	36	19	36	25
CCTTATTCGTGTCTAG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CACTCCTCCTCCCCTA	alt_5975_new	5	16	6	9	15	10	9	8	12	3
ATCGATTTTATTTCTG	alt_5975_new	5	6	3	2	8	9	12	4	9	9
TAATGCATGATTAACG	alt_5975_new	14	15	16	22	17	11	23	20	23	18
CGTTGATTTAAGCGGT	alt_5975_new	13	9	8	10	10	14	8	11	7	12
ATGCTCTTAACTGGAT	alt_5975_new	28	31	44	37	44	35	50	22	28	31
ATTCTGCACTTTTCGA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
ATTGGGTGTCCCAATG	alt_5975_new	8	12	4	7	6	9	5	4	7	4
TGCGTGCGTCTTAAAT	alt_5975_new	23	25	13	20	26	16	19	18	27	11
TAGCATTATGGGCGTG	alt_5975_new	13	26	12	18	14	11	20	12	18	18
GTTTGCGCAAGCATTA	alt_5975_new	45	38	48	31	42	38	32	32	45	33
GTGATGTGGTACTTGA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
ATTGCTGGCGCTGGAT	alt_5975_new	20	29	36	21	22	14	20	21	21	19
AGACCGTTGTGCGGCA	alt_5975_new	33	41	34	37	52	14	60	31	41	20
GTCGGTGTTGTCTATC	alt_5975_new	12	6	8	10	7	4	12	7	12	10
TCTTTGGTACTCGGGT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GGCCCGGAGAATTGTC	alt_5975_new	24	25	30	20	29	22	21	21	32	15
GTTGTAACTCTCTGTT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TGCGCGTGTGGATCTA	alt_5975_new	5	7	22	6	13	10	12	17	11	2
ATGTGTAGGTTGTGAC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CCTGCATAGTTAGGTA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CTGAGCACGATTCAGC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CTATCTTATGCGCCTG	alt_5975_new	18	17	32	33	25	21	32	20	20	13
CGATATGTTCATTACC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TGTACACACCACTCTG	alt_5975_new	16	29	20	24	53	23	35	14	24	25
CTGCGAACCCCTTGTG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CCCGATTGATAGTTCG	alt_5975_new	3	6	9	4	13	7	16	7	12	3
TTCGCATTAAGGTGTT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
AGAGAATGCCTGGGAT	alt_5975_new	36	42	51	39	53	39	41	35	47	47
CGAAATTCGGCCTTCG	alt_5975_new	51	51	61	57	60	49	72	54	66	44
CTCTTTCGTGCGTTTG	alt_5975_new	105	153	114	90	168	87	148	85	155	72
GCTTTCTGATGGCCTG	alt_5975_new	56	55	61	51	59	53	62	41	64	50
AGGAAACAGCATCGCT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TCAATTTTCTGCTTGC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
ACAATCATCACGCTAA	alt_5975_new	32	37	32	36	36	31	32	31	60	39
CTCACGTTGCTAGGTG	alt_5975_new	0	0	0	1	6	1	1	0	1	0
GACTCTTCTTCGATTA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TCTGCGACTGGGTGAT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TTGACTAATTGCCCAT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TCATCCTCACTCTCCG	alt_5975_new	13	39	24	22	41	23	38	15	57	14
CCTTAGATTTATCCTG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GCACCCCGGGGCCCTG	alt_5975_new	17	20	23	16	24	25	22	18	27	13
TATTATTCGCACCAGG	alt_5975_new	27	43	39	38	36	25	49	34	51	24
GGTAACAGTCGGGCAA	alt_5975_new	6	6	11	4	7	5	7	5	9	6
TAACTTTATCGCGGCC	alt_5975_new	12	11	10	5	17	16	7	9	8	6
TCTGATTCGTACCTAT	alt_5975_new	102	174	158	118	234	111	207	101	203	111
ATTCGCTTTATTAGCA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TTCTAATCTACAGGCG	alt_5975_new	9	7	15	12	11	8	19	7	11	15
GAACAGTAACCATGAT	alt_5975_new	7	16	12	1	10	7	16	15	11	6
GTATTCCATGCCTCCT	alt_5975_new	13	16	17	13	15	12	13	21	18	9
CTCTTCGCAGTTCGTG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TGGGGTATGAGATATT	alt_5975_new	14	33	30	11	18	14	23	11	26	11
TTCTATTATGCTACAG	alt_5975_new	1	0	3	0	4	0	1	0	0	0
GTTGTAACCGCATCTA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CACCACCAAATCACGT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GATTCCATGTCCCTTT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TACATCAGCCAGATTT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CCCCTTCTATCTGTGA	alt_5975_new	14	13	11	8	13	9	17	5	21	6
GGTACACAGGATAAAT	alt_5975_new	45	42	55	49	46	51	86	50	64	37
CCCGATTTTTAGTGCA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GCGAGGGGTCATAGAA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CCTGACGCCATTGCCG	alt_5975_new	9	5	12	13	14	6	9	5	5	8
TTCAAAGAGGTCACAC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GTTTCTGGGTAATATG	alt_5975_new	48	43	67	41	63	49	61	45	50	46
TTTCAGGCTCGCCGAC	alt_5975_new	27	31	35	44	28	19	35	34	36	25
CGATGGTGCTATCGCA	alt_5975_new	5	5	8	5	4	3	7	4	8	6
CTCTCGGCTTGACAGC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
ACGGCCGGTATGGAAT	alt_5975_new	13	17	9	10	11	12	16	6	22	12
ATTCATCAGGCACATG	alt_5975_new	65	110	92	77	88	86	78	75	116	70
ATCGATCGCTTCACAG	alt_5975_new	6	9	9	14	8	8	6	11	11	3
CTCAGTGCCGTCTTGA	alt_5975_new	2	0	1	0	1	0	0	0	2	2
GTCCTACCCCTATAAC	alt_5975_new	166	304	205	227	319	152	310	217	292	150
CCGCGACATTCATGTT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
ACAGGTCCGACTATCG	alt_5975_new	19	21	30	23	20	14	21	17	22	13
TAAGTGTGCCCCGAAT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TGAGTTCTATACAGTG	alt_5975_new	1	3	3	3	3	3	3	1	2	3
CTATGTTGTTCGCTAT	alt_5975_new	11	4	6	13	6	8	8	8	9	10
TTGACCGCGGCCCTTT	alt_5975_new	7	12	4	6	10	5	6	4	13	9
TCTGCATAAATTGGGT	alt_5975_new	17	17	4	16	16	12	18	9	7	13
CCGGCTGTAAAGTTAG	alt_5975_new	25	27	21	18	22	17	21	21	26	14
AATCAACTGACTACTG	alt_5975_new	22	16	15	9	17	14	14	11	21	11
TGGGCGGTTTCCTACC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TTCTTTCATGGAAACA	alt_5975_new	44	51	57	45	41	36	57	28	58	32
AGAGGCCTCGCAGGAT	alt_5975_new	9	11	16	15	15	14	19	8	18	11
CATGGCCGCTATTTGT	alt_5975_new	2	2	6	4	4	5	1	5	2	3
ACATGATTGCTGCCTA	alt_5975_new	13	19	23	15	22	18	25	15	30	9
GCCCGATTGCAAAACT	alt_5975_new	26	35	35	25	40	24	38	32	33	14
ATAGACTGAAGGTGCG	alt_5975_new	15	33	24	26	30	15	25	22	38	16
CGACATCGTTCCTTGG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TACTTGCACGGCTCTT	alt_5975_new	22	34	36	24	33	14	35	25	29	26
TCGAGCTGCTACTGAT	alt_5975_new	3	7	3	4	5	3	5	1	6	3
GGCGACACTTCTAATT	alt_5975_new	2	0	2	2	0	0	2	0	0	0
CAGTCCATTTTGTTGA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GCATCCATGAAAAGTC	alt_5975_new	68	67	72	71	75	57	73	59	87	52
CTTGGTTGACATCGTA	alt_5975_new	25	23	31	14	26	19	22	20	33	21
TGTGGCGGTACATTTT	alt_5975_new	4	3	11	7	12	11	11	7	10	10
TGGGCCTCAGCGCGTC	alt_5975_new	2	7	6	4	6	3	6	5	4	1
AGCAGGATAGATGTCG	alt_5975_new	22	15	20	11	14	26	17	21	25	15
TTTGGGCGTAATTTTT	alt_5975_new	41	77	72	70	74	50	74	46	94	43
CGACTTGCAAGGGCAC	alt_5975_new	64	69	89	65	67	54	85	72	84	40
AAAGCCTAACCCTTAT	alt_5975_new	2	6	2	1	0	2	3	2	2	1
AAGGTCATGACGAGTA	alt_5975_new	102	103	109	96	95	81	106	73	110	75
CGTTCATGTTTTCGGC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TCACTTCCCAGGTGCT	alt_5975_new	45	132	45	58	148	40	148	44	145	51
GGCACGTTGCTACCAG	alt_5975_new	19	28	19	17	29	8	25	13	20	17
CAGGCATGATCTTATG	alt_5975_new	16	19	30	18	29	19	25	15	20	15
CTACTTCCACCCAAAC	alt_5975_new	11	20	19	17	17	8	22	11	15	8
GTACACCGTTTAGAGC	alt_5975_new	4	16	18	9	17	12	11	8	17	4
GGTACAACTCTAGTCT	alt_5975_new	2	11	5	3	6	7	10	5	12	2
GGAAGCGCGATATCGC	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TATCCGCCTGCCTTCG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TCACCGCCCGCCTGGT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
AACCTATGACGTCAGA	alt_5975_new	69	101	85	60	79	65	103	54	110	63
GGTATGGGTCAAATCC	alt_5975_new	54	54	58	49	74	51	76	39	65	59
GGTCCCTTTGTATAAT	alt_5975_new	4	8	8	4	5	10	8	6	9	8
GGGACCAGTGGGCCGA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GGCGCCACTGTTGTAG	alt_5975_new	8	16	12	10	20	11	24	4	26	8
ACACCAGGTCTCCGTC	alt_5975_new	67	62	72	49	77	52	72	63	81	53
GGTGCTTCTAGAACAG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
TTGCCAGCCGGAACTG	alt_5975_new	30	16	29	23	29	27	40	39	23	26
CGCTACTCACCAAAAT	alt_5975_new	6	23	14	8	16	4	23	4	30	3
TTTCAGCGTTCAGGCG	alt_5975_new	4	7	3	1	6	4	6	6	1	6
CAAAACAGTTTTCTGG	alt_5975_new	32	32	26	25	41	20	35	28	43	17
GCTATGACGGCTCGGA	alt_5975_new	3	11	12	6	10	6	6	7	7	5
GTTTCCGCATGTCGAA	alt_5975_new	0	0	0	0	0	0	0	0	0	0
GGCTTTGGAACAGAGG	alt_5975_new	222	242	261	203	237	209	261	183	286	186
GCTTTACGCGATCACG	alt_5975_new	8	17	16	16	12	14	8	16	16	12
TGGCTATCCATTAACA	alt_5975_new	35	68	41	26	48	39	70	38	47	25
CATAGTTCTTGGATCC	alt_5975_new	44	47	42	31	46	25	59	30	54	28
TCTCGCCACTGATCCA	alt_5975_new	98	117	110	111	113	124	129	105	127	101
CTTTGGAGACTACCGG	alt_5975_new	65	74	49	35	60	46	57	48	81	46
TAATGGGGCGGGCCTT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
AACGTATGATTCGCAG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
ACCTTTTCTACTGGGA	alt_5975_new	57	70	75	38	69	46	74	51	78	37
CAAGTCGTGGTCTGAC	alt_5975_new	9	8	12	18	25	9	12	8	10	8
TTTTTTTGTCCTATAT	alt_5975_new	11	21	25	7	23	11	17	14	15	12
TCTACGAATAATCCTT	alt_5975_new	51	52	73	71	89	51	88	61	74	63
GAGGGTGTGGCACCCT	alt_5975_new	6	6	8	1	3	5	8	3	12	4
ATATAACGATTCTGCG	alt_5975_new	0	0	0	0	0	0	0	0	0	0
CGAAACGTGGAAAGTA	alt_5975_new	42	41	37	36	51	45	44	33	41	27
TAAGATCGATTAGGAT	alt_5975_new	18	18	21	13	21	13	19	21	20	10
CCTTCTAACTTTTCTA	alt_5975_new	14	19	18	15	18	9	20	15	21	18
CTCTTCACAGCCTGGT	alt_5975_new	0	0	0	0	0	0	0	0	0	0
ATAGCGCCATTACTTA	ref_5628_new	10	12	7	7	14	2	11	8	4	1
CCACTAAGCAATATGC	ref_5628_new	0	0	0	0	0	0	0	0	0	0
AATCGGGATCGCTGGT	ref_5628_new	7	17	16	10	15	4	15	7	8	13
CCTTGCAGCTGTACGG	ref_5628_new	8	17	7	4	4	7	12	7	16	7
GCAAAACTCAAGGAGT	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TCTCCATGTCGCCTCG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
GCCGGAGGTTCATGCG	ref_5628_new	16	28	29	25	54	17	35	21	30	16
AGTGGTTAAATCCCAA	ref_5628_new	41	89	74	54	99	50	139	38	103	42
TAGCTGGAGTAGCATC	ref_5628_new	6	26	8	14	37	14	39	8	36	7
TCTTCGGAGTAAGGCG	ref_5628_new	2	12	8	4	8	8	8	4	12	2
ATCCACAATACGAGGC	ref_5628_new	0	0	0	0	0	0	0	0	0	0
CCGTTGTATTCGTGGC	ref_5628_new	8	13	0	7	14	1	13	6	14	5
CTTTCTTCCACAATGA	ref_5628_new	2	6	6	11	12	6	9	4	4	4
TTTGGGTTGGCAGTGC	ref_5628_new	12	17	16	12	28	15	13	11	32	15
TACAGGCATATGCACG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
ATACTCTAGCTCCTTT	ref_5628_new	2	12	5	5	10	3	12	3	9	3
TTTCTTCTCCCGACAG	ref_5628_new	26	53	38	39	33	28	47	28	55	28
TTCCGCTGCTGGCGGG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TCGATTATCGGTTTCC	ref_5628_new	0	0	0	0	0	0	0	0	0	0
GTTCCTCCGACGTTAG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TTGGATTTTCAATCGC	ref_5628_new	3	6	1	1	3	2	3	0	7	1
AAGTTTCGCGCTCCTA	ref_5628_new	13	74	36	28	66	38	69	39	73	40
TAACGCATCGGCTTCC	ref_5628_new	7	31	12	23	24	18	30	16	28	12
TCTATTTCACTGCTTA	ref_5628_new	10	23	9	17	30	10	28	8	17	14
ATAGCCAATATCGCAA	ref_5628_new	5	12	3	10	15	8	25	7	10	4
GCTGCTTTCCGCATGG	ref_5628_new	24	51	21	26	29	24	39	20	43	26
TGTGGCACGATGTCAA	ref_5628_new	6	19	3	7	12	6	12	5	11	1
TTCGCCCGTTCTTACG	ref_5628_new	5	1	5	2	3	2	9	3	5	0
TGTCTCGCTATGAAGG	ref_5628_new	8	11	7	6	15	8	10	8	5	10
CGTTAAGATACCATAG	ref_5628_new	44	82	33	42	73	39	97	32	84	42
GACACAGACGATCAAT	ref_5628_new	5	4	7	4	2	4	5	3	6	7
AAATAGCTGTTTAATT	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TCGAGGACACCAAATA	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TTTATTCTGGAGAGGA	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TTAATGCGAGTTCTGC	ref_5628_new	0	0	0	0	0	0	0	0	0	0
AGTTGTACGAGCGATT	ref_5628_new	10	16	5	7	14	6	20	5	16	4
CTGGTACAGCACTCTT	ref_5628_new	18	44	13	24	52	17	45	20	54	19
AAGCTGGCTTAAAAAT	ref_5628_new	0	0	0	0	0	0	0	0	0	0
CTTTGCTATTACCTTA	ref_5628_new	0	0	0	0	0	0	0	0	0	0
GTTATCAGAAGGCGTT	ref_5628_new	11	18	17	12	14	10	27	15	23	9
CGGGATCGCAATCTAT	ref_5628_new	9	25	8	22	19	6	25	9	22	4
CCTTGACACTCCTCTG	ref_5628_new	0	4	6	0	1	2	7	1	6	1
ACAACATTTGCATGGT	ref_5628_new	22	24	13	18	32	11	39	15	27	8
TAATTAGCTTAATGGG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
ACTCCGCACCATGTTT	ref_5628_new	0	2	0	0	2	0	2	0	0	0
AACCTATTTTATCGCG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TACCTGCTTGTCATAA	ref_5628_new	23	62	25	22	59	26	53	19	75	16
TACCCCACTGTTGTGG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TCTTTCTGAGCATGTT	ref_5628_new	4	5	1	3	3	0	8	3	7	2
TCTTTGGAAGGGCTAG	ref_5628_new	13	28	12	14	24	24	27	11	31	13
GCGTACTCATGTAAAT	ref_5628_new	0	0	0	0	0	0	0	0	0	0
CGACTATGAAACCGCC	ref_5628_new	6	9	3	7	6	3	10	8	9	4
TTAAGGGCGTTTTGCA	ref_5628_new	11	29	18	9	27	5	26	5	13	11
GAGGCAAGGAAGTACC	ref_5628_new	1	10	0	4	11	3	8	4	5	3
TGCTTCGGTACAATCA	ref_5628_new	4	4	1	1	5	1	6	1	2	2
GAGTATCTTCGTTTAG	ref_5628_new	13	20	10	15	15	14	18	14	16	21
AAGTTCTTCGGCCAGA	ref_5628_new	25	28	6	21	46	19	45	13	37	18
ATCGTTTTGGTAATGT	ref_5628_new	74	120	80	65	128	59	134	56	129	45
TACGAGCTATCTTAGA	ref_5628_new	0	0	0	0	0	0	0	0	0	0
TTGTTTGGAGTATAGT	ref_5628_new	13	28	7	17	29	15	24	9	23	6
CGAGTTCAGCCGGGGA	ref_5628_new	0	0	0	0	0	0	0	0	0	0
ATAATTTTGACCCCGC	ref_5628_new	6	10	7	11	13	5	6	8	14	1
ATCCTTAAGCTGAGAA	ref_5628_new	0	0	0	0	0	0	0	0	0	0
CTGCCGGTCTTTACTT	ref_5628_new	6	6	7	5	2	4	10	3	9	2
CACTGTAATCCTCGCG	ref_5628_new	6	13	8	10	15	8	17	6	15	3
CACCCTGGCACGTTGC	ref_5628_new	6	19	9	5	19	7	14	3	19	5
CCTGCCCGCTTCGTGT	ref_5628_new	13	36	14	15	35	13	30	14	37	21
GATTCTTATTTCACGA	ref_5628_new	8	30	26	15	28	18	22	10	36	9
TATGAATAATCTTTCC	ref_5628_new	14	25	16	13	28	14	15	17	27	20
GATATTGCCCTCCTGT	ref_5628_new	43	69	42	47	98	30	69	42	105	37
CGGGTAATCTTAGACG	ref_5628_new	6	10	9	5	12	7	16	5	16	4
GGGATTTTAAAGGCCC	ref_5628_new	6	13	12	10	9	4	18	13	13	10
AGGTTCCTTAGGAAGC	ref_5628_new	0	0	0	0	0	0	0	0	0	0
CTGTGGTAAATGCATG	ref_5628_new	77	176	99	77	152	76	164	60	172	72
CCACCTAACTATTACG	ref_5628_new	33	57	32	31	82	36	56	31	52	32
TAGCCTTTTCGTAGTG	ref_5628_new	19	36	22	18	36	8	37	11	42	11
TATCCTTTTCTGCCAG	ref_5628_new	3	4	0	1	8	1	6	6	9	3
TGACTGAATGGTGGTT	ref_5628_new	11	33	23	11	42	21	25	14	37	7
TTTAAACTCCAGGTCG	ref_5628_new	25	39	23	19	44	14	49	19	49	22
GGCTTCCATTAATGAC	ref_5628_new	11	44	28	22	37	25	43	25	63	26
GTCGTAGTTCGAACGA	ref_5628_new	24	35	17	21	27	13	25	13	19	11
TGTATCTTTGTGATCG	ref_5628_new	0	0	0	0	0	0	0	0	0	0
AGTCGCGGAGTCTAGG	ref_5628_new	4	4	4	3	12	4	8	3	11	5
TGGCTTTAAGAAATCC	alt_1924_reverse	14	21	23	20	12	17	12	19	22	19
TTCCGAAGTAATTGGA	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
CGCCCCCGTTCGCATG	alt_1924_reverse	1	0	8	3	1	1	1	0	4	2
TTGGCGATGCATGCGT	alt_1924_reverse	45	62	67	48	56	43	48	58	65	60
CTTGGGTTGGCCGGCC	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGAACGGTGTTAT	alt_1924_reverse	36	47	60	43	43	39	45	47	44	44
GTACCCTTATCGCTAC	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCATTATAATAAT	alt_1924_reverse	81	81	102	62	76	90	100	77	77	75
TCCGATTGTGTTCGGA	alt_1924_reverse	48	44	58	39	40	29	52	44	50	48
TGCCTGATGCACACGT	alt_1924_reverse	111	113	107	104	105	103	100	91	100	91
TTCGCTTAACTCGATA	alt_1924_reverse	51	50	55	56	42	40	58	29	50	43
TCGACTTTGTCGGACT	alt_1924_reverse	22	23	22	14	21	15	31	19	36	24
ATCATGCACGATCTAT	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
CCCTGCAAAATGGACC	alt_1924_reverse	36	36	50	50	37	39	39	34	53	57
CCGCGCTGAATACACG	alt_1924_reverse	64	51	73	69	45	65	57	57	73	56
TTGCATATTCTAAGTG	alt_1924_reverse	15	14	14	10	23	9	15	9	12	13
GACGCGTTCGTTCTGC	alt_1924_reverse	9	13	7	5	13	8	17	10	8	6
CTTTCTGGACAAGCTT	alt_1924_reverse	109	116	149	119	166	118	127	125	150	117
GTTTTAATGATTAGGG	alt_1924_reverse	66	106	82	75	75	63	89	67	69	45
TATATGTGTCAGTCAA	alt_1924_reverse	10	10	5	9	5	6	18	9	11	8
GAGACAATGGGTATTA	alt_1924_reverse	53	50	62	56	55	60	51	47	56	46
GTTTCTGACTATACAG	alt_1924_reverse	82	117	130	109	146	91	138	89	148	106
TCATGTGTCCAGCTAT	alt_1924_reverse	7	9	12	11	11	9	9	13	9	12
GGGGGGGCCACTCTGG	alt_1924_reverse	15	9	15	14	8	15	12	16	19	16
TGGTTCCACACATATT	alt_1924_reverse	0	0	0	0	0	0	2	0	0	0
GCCCGTCCACTCGTGG	alt_1924_reverse	24	18	18	19	29	18	27	24	24	27
TAACAAATTTTCGGAT	alt_1924_reverse	20	9	24	14	28	13	15	19	20	13
CTCTAGCCAATAGGGC	alt_1924_reverse	27	53	38	39	47	30	53	26	49	26
GATATACTCTTGCTTT	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
TCGATGTGATGTACCG	alt_1924_reverse	6	10	12	8	11	7	14	9	9	4
AGAGCACATTTCTCTC	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
CACCCCTCTTACTCTA	alt_1924_reverse	94	144	89	96	122	78	134	77	153	92
ATCCGAGTCTGCCTTT	alt_1924_reverse	130	151	165	135	126	151	163	118	149	114
TGCGGTTTCGTTCACA	alt_1924_reverse	148	139	151	115	135	128	143	131	175	117
CGTGCCTGCAGCCAAT	alt_1924_reverse	14	14	16	17	25	15	17	18	14	15
CTCACGTGTATTCCAG	alt_1924_reverse	2	3	0	2	3	2	9	1	9	4
ACTTCCCTCTTGTACC	alt_1924_reverse	8	67	12	11	82	7	52	14	63	6
CTGTCAGTTGTAACTA	alt_1924_reverse	57	92	49	47	61	56	75	58	71	56
CCACCTCCTCGTAATG	alt_1924_reverse	9	19	18	19	12	21	14	17	22	9
ATGAAATTTTGAAGCC	alt_1924_reverse	4	6	7	4	5	4	5	4	6	4
GGTGCAGTTAATGGAT	alt_1924_reverse	75	66	82	109	85	79	88	66	104	91
TGCAACACGGAAAGCA	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
ACCTACGGGAGTTAAG	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
TATGCTTAAGTGGGCC	alt_1924_reverse	19	26	36	27	33	20	33	30	17	24
TCACATTTACATGATT	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTCCGTCCGTGCA	alt_1924_reverse	42	54	36	50	91	54	67	39	56	41
ACAAGTCCCTGACGAA	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCTAAAGACTACG	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
TGGTCAACGCAAAATT	alt_1924_reverse	72	64	79	65	61	61	63	43	62	64
GCACAGTCGAAATCGT	alt_1924_reverse	64	58	80	85	68	70	79	54	74	67
GGGCCAGATCTGTCTT	alt_1924_reverse	0	0	0	0	0	0	0	0	0	0
GTGTAGTAGAAATCCC	alt_1924_reverse	104	96	141	106	105	89	124	102	110	84
CGATTCTAAACATTTG	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ATACCCCAAGCTTGTC	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
GAGCCCACTAAAGCAA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCATGCGTGCCC	ref_4534_missing	4	7	7	3	4	5	2	1	10	1
GATCCACGTGAATTTT	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ATTCGGCTGACGGTCT	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
GACGCTCTCGGTACTA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
GGTAATGCCAGGTATC	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
TCGATAACATTTATGA	ref_4534_missing	2	3	1	1	8	2	2	1	4	0
TCTTCATTCAGCAAGC	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
TCCTATGTCTTACACG	ref_4534_missing	49	42	36	29	35	35	42	22	56	27
TTCCTGCTGTACAGCA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ATCTGCTATCTAGAAC	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
AATATATTATCTTCCC	ref_4534_missing	6	13	10	6	12	7	4	5	6	4
GTGGTCCTGATTACCT	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ACGCTCGTTTCTAGCA	ref_4534_missing	29	44	29	34	43	37	45	22	53	27
TGATAATACTTGCTAA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ACTCTTCTCGGTAAGG	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
GTCAATGCAGGGGTGA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
TCTGTGCCTTTCCGAT	ref_4534_missing	7	9	11	7	10	17	10	17	7	13
ACCAGTTTTCGTCTCA	ref_4534_missing	5	8	6	8	9	6	8	3	8	2
TGATGAATGGGAATAC	ref_4534_missing	0	0	0	0	0	0	0	0	1	0
TAGCAACGTGTGATTA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ACGGGACTTTTTTCGA	ref_4534_missing	7	12	9	16	13	11	14	2	13	7
TCAGCACTAGAGGAGG	ref_4534_missing	2	3	2	2	6	0	0	2	3	0
CAGCGCAACAATGCTT	ref_4534_missing	27	38	21	26	42	12	41	23	33	16
CTAACCGTCAAGATCT	ref_4534_missing	14	19	23	10	12	14	17	16	20	15
TCGGTGTTTGAATAAG	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
TAGTTAACATGTTCCA	ref_4534_missing	4	9	8	6	10	5	10	5	12	4
GTGTGAACTCGGGATA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ATCTCGCTAACATCGT	ref_4534_missing	34	47	40	26	49	35	54	31	36	31
AGCCAGTCATCTATTA	ref_4534_missing	37	78	50	53	91	41	91	51	92	44
ATGTGAGTGACATGTA	ref_4534_missing	2	6	9	3	8	6	8	7	4	5
CGAGCGTCCGGCTTAT	ref_4534_missing	279	411	361	298	453	305	414	252	464	247
AAGTAAGCTCGACCCC	ref_4534_missing	9	12	6	4	18	8	5	9	23	5
GATATACATTTCCGGG	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
ATAGGCTGCCTGTCAG	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
TTGCGTCGTACTAGGA	ref_4534_missing	38	60	56	44	50	36	67	41	55	26
CTGCCTCATTGGGTTC	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
AGTCCTTCGGTCACTA	ref_4534_missing	20	25	28	18	32	13	24	21	35	10
TGGGGGCCATCGTCTT	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
CTTGGGCCTTGGATCT	ref_4534_missing	15	21	23	12	12	13	19	13	30	12
TTACCGATGGTGATCC	ref_4534_missing	67	68	63	57	70	58	89	51	92	37
TTTGGTCATTTTTGTT	ref_4534_missing	23	16	20	12	14	14	20	19	23	13
GGATCGCCATTATCGG	ref_4534_missing	7	9	8	5	8	10	9	5	10	9
GCATGCTACTATGCAT	ref_4534_missing	1	8	6	3	9	5	3	1	8	2
AGACCTTATCTCTGAA	ref_4534_missing	0	0	0	0	0	0	0	0	0	0
GTAGTGGTCATAGACA	ref_4534_missing	90	158	135	99	137	97	180	97	177	99
ATACTACGGAGTGTGC	ref_4534_missing	31	62	31	29	47	32	42	14	45	34
TTATTGACCTGACAGT	ref_4534_missing	89	149	82	74	143	71	136	67	139	80
CATCCTGCGTAGATGC	ref_5679_new	64	100	74	54	89	33	92	57	107	58
CCAGGGTTTGCGAGCT	ref_5679_new	6	8	8	9	14	11	12	10	16	10
TCATCCGTTTTATCCT	ref_5679_new	7	13	14	7	15	10	8	5	10	12
CGTCTGCAGGCTCCGT	ref_5679_new	25	47	47	42	54	30	56	34	72	30
TTTGCTTTTCCATACT	ref_5679_new	15	37	31	24	28	23	25	21	26	17
ATAAGCCTGACATACT	ref_5679_new	0	0	0	0	0	0	0	0	0	0
TTCTTTCCGCTCAATC	ref_5679_new	4	8	16	11	10	6	12	3	9	6
GCTGTCGACCGAAGGT	ref_5679_new	0	0	1	3	1	1	3	5	2	1
CTTTATTACGGGGCTC	ref_5679_new	0	0	0	0	0	0	0	0	0	0
GTTCCTGGGCAACGCG	ref_5679_new	22	42	27	27	40	17	58	34	56	17
CTGGTACTAACTCGCT	ref_5679_new	9	20	12	7	15	12	16	11	25	12
GATTACCACACTTAAG	ref_5679_new	10	22	19	8	19	7	29	5	27	6
AGGAGCAGTTTTACAT	ref_5679_new	55	104	95	66	112	63	77	73	121	69
TTTTATCTCGTTAATA	ref_5679_new	16	26	19	8	36	14	23	15	26	13
TGTTCTCGTATTTGCT	ref_5679_new	6	20	15	11	18	5	10	8	17	12
GTCGAATGCACGCTCT	ref_5679_new	33	68	44	48	69	31	69	38	62	41
ACATCATGCCTTAGAC	ref_5679_new	30	40	37	17	51	21	49	23	54	20
TCCCCTTCTTGGGCGC	ref_5679_new	16	44	17	17	40	15	51	18	59	14
GGTTACCACTTTCCGG	ref_5679_new	26	25	21	22	32	9	47	19	41	15
GGATGTAAAGTCTAGA	ref_5679_new	0	0	0	0	0	0	0	0	0	0
TATCGGATATCTTTAT	ref_5679_new	0	0	0	0	0	0	0	0	0	0
TGGGCTACACAGCCGT	ref_5679_new	11	10	9	5	7	5	16	2	21	12
ATATATCAGGAGCTCA	ref_5679_new	0	0	0	0	0	0	0	0	0	0
TTGATTTTCCCCGAGA	ref_5679_new	5	4	6	3	11	4	8	6	5	3
TTCCGTGTCCCTGCGC	ref_5679_new	66	99	54	46	96	68	100	47	125	46
CGTAGACGCGCGGCGA	ref_5679_new	4	23	12	5	24	14	15	4	29	10
ATCCTCCGGTGAAACA	ref_5679_new	4	5	3	10	10	1	7	3	2	5
TTAGTAATTCGGCCTG	ref_5679_new	76	129	81	66	153	63	123	70	128	56
GAACCTTACAACCCCT	ref_5679_new	17	33	23	23	31	14	45	20	28	22
TGATTCGGACGCTTCA	ref_5679_new	52	99	79	74	89	64	94	73	106	67
ATAGGCTGGGCTAGTC	ref_5679_new	25	41	28	23	36	18	45	21	40	24
TACTAGAAATACAACC	ref_5679_new	37	73	53	41	105	34	116	35	78	38
GGAAGCCGTCCAGGTA	ref_5679_new	28	24	21	16	35	13	49	13	41	17
AGCCAACCTGTTACCT	ref_5679_new	62	143	88	66	193	58	194	67	154	68
GGTACCATCTAAATTG	ref_5679_new	0	0	0	0	0	0	0	0	0	0
ACAATCTTTTCACAGG	ref_5679_new	32	53	43	29	56	32	55	25	63	33
ATCGAGTGGTTGTATC	ref_5679_new	48	85	38	56	84	41	64	38	109	36
ACGACATTATAGTTGG	ref_5679_new	27	51	41	31	45	43	53	35	55	34
TGCTCGGTAATTCTTT	ref_5679_new	0	0	0	0	0	0	0	0	0	0
ATACTTGTCGATGGTG	ref_5679_new	14	6	13	7	9	10	13	11	18	5
GAGCGGATCGATTTTA	ref_5679_new	6	5	3	1	6	2	11	4	10	5
GCAATAGGTTCGTACA	ref_5679_new	32	67	40	43	62	36	68	43	69	27
GGGGGGTTCCTTTTCT	ref_5679_new	30	40	47	31	54	28	51	39	53	26
CATTCGCTCTATCCCT	ref_5679_new	27	88	59	44	90	40	62	55	103	27
TTGTGCACTTAGGGGC	ref_5679_new	44	61	68	38	73	33	63	33	59	33
CATCAGCATGACCGAT	ref_5679_new	43	57	43	36	67	43	50	37	70	35
GGTACATGCCTCGGGC	ref_5679_new	59	76	64	58	98	52	80	48	90	42
CCCGCCTTGTCTGCTA	ref_5679_new	0	0	0	0	0	0	0	0	0	0
ATTCGCGCTTTCTGCA	ref_5679_new	9	15	7	8	9	4	13	8	9	6
CCCCGCCAAACAGACC	ref_5679_new	9	26	19	8	21	18	27	6	45	5
TTAGTTCCGTGCCGGC	ref_5679_new	20	34	28	21	26	14	29	14	34	21
CGCCTCCGCTTCCATA	ref_5679_new	0	1	1	1	1	1	0	1	0	0
TATTTTCAGCTTATCG	ref_5679_new	22	29	37	28	31	29	46	22	40	23
GCATCCGAAGTTTGTC	ref_5679_new	0	0	0	0	0	0	0	0	0	0
GTTGTTCTGGTTGTGG	ref_5679_new	0	0	0	0	0	0	0	0	0	0
AGTGACTTCTGTCAAC	ref_5679_new	15	30	23	9	27	13	32	7	33	19
ACCCGTCATCGAGGCT	ref_5679_new	33	42	37	22	55	24	50	28	64	24
CCGTTGTGTTTATTGA	ref_5679_new	39	71	43	35	77	27	60	30	61	31
CTAAATAATATGGGTC	ref_5679_new	2	14	3	3	9	2	9	9	5	9
TCTGTGTCGACCAAAC	ref_5679_new	0	0	0	0	0	0	0	0	0	0
ATTCTTCGGATCAGAA	ref_5679_new	0	0	0	0	0	0	0	0	0	0
GGCTATCACTTCGTGT	ref_5679_new	0	0	0	0	0	0	0	0	0	0
ATGTTCTTTACAGTTT	ref_5679_new	12	18	16	10	10	8	14	4	24	13
TCGAAGTCCTGTATCA	ref_5679_new	32	47	48	35	50	45	62	33	68	27
GGGCACCTCGTCATTG	ref_5679_new	13	39	24	13	35	23	45	13	42	17
TTAGCATGTAGGTCAT	ref_5679_new	55	103	55	48	102	50	97	55	118	56
ATACGACGGTTTAATA	ref_5679_new	0	0	0	0	0	0	0	0	0	0
TACGGGTAGAAGCATC	ref_5679_new	0	0	0	0	0	0	0	0	0	0
TAATAACGATTTGCCG	ref_5679_new	43	58	33	31	65	31	70	40	49	23
TGCTGTTTTACAAGAT	ref_5679_new	0	0	0	0	0	0	0	0	0	0
TTTACTTATAACAACC	ref_4161_missing	9	11	9	8	14	7	10	4	16	2
GGACTCAATACGGTGT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
ATGTAATAAGACCTCA	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CTTGGTTTTTACGTCA	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CGCTAGCTAGCTGGTT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GGGCCGTCTTTCCGGG	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CGCGAATTTCAGTTAT	ref_4161_missing	25	45	29	22	53	29	45	24	48	29
CCGTCTTTTTATGCTC	ref_4161_missing	0	2	3	1	6	2	3	3	2	3
GTTTTCCCGGCCGCGT	ref_4161_missing	7	7	8	3	7	8	9	8	4	3
CGTAGATTTGTGACCG	ref_4161_missing	0	3	5	0	1	1	3	1	1	1
ACATGCCCCACGGTCA	ref_4161_missing	11	19	9	15	24	15	29	13	29	16
AAGTCGCTGATAAATC	ref_4161_missing	23	50	36	25	40	26	46	23	40	24
GTCCACATCTGTTTTT	ref_4161_missing	0	0	0	0	1	0	1	1	0	0
TTCGCGACGAAGATTA	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GCCGGATTAAACGTCC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
AGGGTTTACTATCCTT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
AAGACTATGCAATTGT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GTCGTCATAATCTTCC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TTCATTCCGAGCAATC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TAGAAGGTCCATTTCC	alt_4161_missing	4	3	5	3	4	10	9	4	5	3
TTCTGCCGTCCTCGTA	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CTCGTTATATGCTAGG	ref_4161_missing	31	58	30	22	90	22	59	20	46	20
CTCGAACTTGGCCTAT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GCCAGCTTTACATAAT	ref_4161_missing	5	15	3	6	11	3	20	4	20	3
GCTGCATCCATCTTAG	ref_4161_missing	4	11	4	8	9	4	5	3	6	3
CGGAGTCAGGACTTTC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TTCTATTCCATGTTAC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TAAATGCCCCGACATC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TCTCGCCCTTTCAGCT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TATGCTATAACTCACG	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CTCCTCTCTATTACCC	ref_4161_missing	2	11	5	2	6	2	9	3	13	4
TCATCAGATGTGCCGA	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CGAGGTGTACAATTGG	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TAGCGGCATTTTTTAG	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
ATTCCGTTCCGGTCCT	ref_4161_missing	2	10	2	0	4	3	1	4	5	2
GTTTCTAATGTCGATT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GGGTCGACGTTTGACG	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GCGGTGTCGATAGGGA	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GACCGTGCGGAAGGGT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TACGGTCAGGCGCTAT	ref_4161_missing	14	17	16	11	21	14	35	7	24	17
GCCAATTAAATCGCAG	ref_4161_missing	27	38	23	19	39	18	36	18	35	17
ATCTTTAAAGATTCGC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
GCCCAACGTTCCCCAT	ref_4161_missing	5	12	8	7	13	6	11	3	8	2
CTGGTACCGTCGCTTG	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CGTCTCCCCCTACCAC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
AATACTCGTCGACTGG	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CAGCCGCAAAGCATCT	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
CCATACCAATCGATTC	ref_4161_missing	10	13	14	21	28	8	22	5	36	10
GGATGTTCCACGCACC	ref_4161_missing	0	0	0	0	0	0	0	0	0	0
TTTAGGTTTCCGCGGG	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GATTCGGGATTCGTCC	ref_2537_fdr	74	86	76	63	98	69	95	60	120	44
GTCTTGGGCCATTGAT	ref_2537_fdr	17	39	30	23	33	23	31	24	29	12
GATTCGGGATTAGTCC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GTTGACTTCGGGGAAA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTGTCTAAAACAG	ref_2537_fdr	19	40	9	24	24	15	34	24	28	13
TAGGATCTGGGTCCAG	ref_2537_fdr	8	7	3	7	9	4	8	3	4	4
AGGGATAATCCCACTG	ref_2537_fdr	14	44	12	20	37	27	34	26	33	18
GCAAGATTTTGGACCA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GCGATCATTGGATGTC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GCTTATCACCCGGGCG	ref_2537_fdr	3	5	4	7	3	3	3	0	7	2
CTATGGTCGCATAGGT	ref_2537_fdr	25	41	44	19	54	24	46	18	47	28
CAGATTCTTTCTGTTT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCCTCCGATGATT	ref_2537_fdr	33	42	27	33	39	18	45	22	48	30
CCCATGACCATATAAT	ref_2537_fdr	92	219	111	89	218	84	243	86	249	91
GTGTTATGAAGTTGTT	ref_2537_fdr	15	22	17	16	14	10	22	18	19	15
CTAGCCGGCGGCGCAC	ref_2537_fdr	25	37	29	22	51	23	44	21	31	14
CAGATACACTCAAAGG	ref_2537_fdr	25	32	24	14	30	19	32	14	40	13
ACAAAATCTTCTTTCA	ref_2537_fdr	40	59	54	42	58	34	66	34	60	28
CCAACGGTCCTAGACG	ref_2537_fdr	32	48	55	33	49	28	42	35	55	35
GAGGATCAAGTATCGT	ref_2537_fdr	19	25	21	18	37	22	19	12	26	29
ACCACCGATACATTCC	ref_2537_fdr	11	20	10	7	21	4	13	7	20	6
TTTAGGGTCATCCGCC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
ACAGGAATATCGCACA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
ACATTATGGCTTTCCT	ref_2537_fdr	27	23	14	27	37	26	35	41	33	27
CTCCGTCGGCCGTAGC	ref_2537_fdr	0	2	1	3	1	0	1	1	0	1
GACTGTCTTCTGCTCG	ref_2537_fdr	12	15	4	17	8	7	18	4	9	3
TGCTCAAGGGTCCTGG	ref_2537_fdr	18	29	32	20	31	12	31	11	26	13
ATAGTGGTCCGCCAGT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGTCGGGTGTATA	ref_2537_fdr	149	185	187	128	209	123	197	107	243	112
GTGTACTCCACTTCTC	ref_2537_fdr	28	51	33	28	44	29	45	35	37	16
CTAAGTAATTGATAGT	ref_2537_fdr	23	35	25	17	29	18	42	15	48	12
TGGATTCATAGTGACC	ref_2537_fdr	21	28	29	19	43	21	29	20	37	11
CTCTCCAGCCCAATTC	ref_2537_fdr	3	3	0	0	1	0	4	1	1	3
GGACTCTTCCATGTTA	ref_2537_fdr	3	7	8	9	15	13	13	8	14	7
CCGTGTCTAGAGAATT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTCCCTTAGTTAAACC	ref_2537_fdr	10	22	11	9	19	13	15	9	29	11
CTGTGACATTCTTGAT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTAATTGCAATCA	ref_2537_fdr	14	37	23	19	36	23	37	18	37	12
AGTTAGAAGCTGTCTA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CCTACATAGAATTCCG	ref_2537_fdr	9	16	8	9	14	6	21	8	18	13
TAAGGAAAGCAAAAAT	ref_2537_fdr	26	37	24	20	42	27	48	21	35	23
GTCCAATGTAAACCTA	ref_2537_fdr	5	22	5	6	14	7	12	5	8	6
TCCCTCGCGATCCTTG	ref_2537_fdr	21	32	24	25	36	21	38	16	39	23
AAACTCTGTGCTCGCG	ref_2537_fdr	1	7	0	3	4	5	2	6	8	2
CAAGTTCGTGCATACG	ref_2537_fdr	29	68	40	30	62	38	74	31	62	38
CCATGGGACTTGTGAT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CTTATGTTCGCGCGTC	ref_2537_fdr	29	56	31	36	46	30	65	36	80	34
GGTTTGACTTACGCTA	ref_2537_fdr	1	4	9	6	8	4	7	9	11	6
ACATTCTTGGGGAAAG	ref_2537_fdr	36	55	52	46	77	52	70	33	53	31
TCAGCAGCAGGGAGGG	ref_2537_fdr	9	21	15	9	21	8	24	11	34	24
CCCGATTTATCCTTGA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGGGAAGTTATTG	ref_2537_fdr	8	11	3	8	7	8	6	6	20	9
CCTCGATTAGCTTCCC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CTTCAAGTGAGAACCT	ref_2537_fdr	4	7	4	5	4	5	9	1	7	5
TGGTATAAGGTGCCTC	ref_2537_fdr	26	50	37	37	52	33	47	22	44	26
ATGTTAGGACATTAAC	ref_2537_fdr	64	73	71	57	91	55	77	48	87	43
CAATGATGATCCTCAA	ref_2537_fdr	10	28	9	15	18	22	15	12	21	7
CTTCCTAGGACACATT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTATTCGGAACGC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGCCCTGGGCGTC	ref_2537_fdr	217	351	265	205	325	207	334	185	334	174
CGGGTTGGGGTGTATC	ref_2537_fdr	1	2	2	0	2	0	3	0	2	0
TTGGTACCGGGTCCGA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTGATTAGCTGGCCTG	ref_2537_fdr	18	36	20	19	30	22	36	13	38	24
CTCTCCACGCCTGACG	ref_2537_fdr	17	15	13	17	29	15	23	11	31	10
TGAGATATAGCTTTAC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCAATATTCGCCA	ref_2537_fdr	13	14	23	9	22	8	28	13	15	10
TTCGGAATTGCGCTAT	ref_2537_fdr	0	7	2	2	3	2	2	1	4	2
AGGCGCTGGCCGAGGA	ref_2537_fdr	54	35	35	43	50	40	57	49	63	42
TGGGTAGCCCTTCGCA	ref_2537_fdr	1	1	1	0	0	0	0	0	3	3
CACGACTATGTCAAGG	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
AGTCATTCATGAAATG	ref_2537_fdr	43	77	61	58	93	49	100	56	90	43
CTTCTTGCCAGATCAC	ref_2537_fdr	51	45	58	56	54	33	43	47	63	27
CTGCATTAAGTAATTG	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GAAACGACTGTTTGGT	ref_2537_fdr	80	86	70	64	99	62	108	46	95	58
ATGCCCCTCATAGCGT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGTCAGCGCCTAT	ref_2537_fdr	5	4	9	4	12	5	13	2	5	3
GCTCTTTAGTTACGGT	ref_2537_fdr	123	218	167	137	205	125	182	122	190	115
TCATCATATGCTTGGC	ref_2537_fdr	35	69	61	40	60	31	72	25	73	38
CGCCTGCGGCTCGCTG	ref_2537_fdr	63	88	87	81	108	61	114	69	109	59
TCTTAGCCCATCATGG	ref_2537_fdr	73	107	70	74	103	71	119	53	119	63
TCCTACGTTCGTGACT	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
AGATTAGGGCAGTGAC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCCCTCTCCACAT	ref_2537_fdr	2	5	1	4	3	3	8	4	9	4
ATGTGCGCCTTCGGCG	ref_2537_fdr	86	103	91	66	118	85	140	67	124	63
GTTGGTCAAACGGGAT	ref_2537_fdr	13	25	11	11	17	13	20	19	26	14
GTGGTAAAAATCAGTT	ref_2537_fdr	26	39	34	30	42	22	47	21	60	28
AGGGCTCCGGCATACC	ref_2537_fdr	16	29	29	19	44	17	40	26	50	27
CGGTATGGTACGTTCA	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
GCATCGCTGATCATTT	ref_2537_fdr	37	64	39	46	62	41	66	48	64	39
ATAGAGGAGCAATCCG	ref_2537_fdr	23	31	17	27	40	19	34	26	44	22
AACAGGTCCAAATTCC	ref_2537_fdr	20	23	15	12	19	15	17	9	29	13
TCTGGCCTCCGTTTGG	ref_2537_fdr	17	26	19	22	25	22	33	19	43	18
ACCGACCATATGGTCG	ref_2537_fdr	38	60	53	48	52	41	68	31	95	47
TTTGTACTCACTATGA	ref_2537_fdr	52	81	71	48	91	55	102	42	95	42
CCTCCCGAACTTACTC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGCTACGCACGGT	ref_2537_fdr	10	38	23	23	36	12	42	16	31	21
GTGCGCCTTCACCCAT	ref_2537_fdr	0	0	2	0	0	0	2	1	0	0
CCAGTTCCCGATTAAA	ref_2537_fdr	1	16	1	4	13	0	15	4	23	2
GCTGCGCAGTGGCTTT	ref_2537_fdr	12	22	19	14	30	11	22	8	30	16
ATACTTGGGGCAGATT	ref_2537_fdr	10	8	12	9	19	8	15	13	14	5
CCGTCTTCTCATATGT	ref_2537_fdr	12	37	12	21	35	9	19	18	18	6
TACCAGAGTGTCGTTC	ref_2537_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTGATAGCGCTCT	ref_2537_fdr	5	14	14	6	12	10	10	10	15	3
GAATAATTCCCAGAGG	ref_2537_fdr	51	49	36	27	49	29	45	31	66	33
ATGCCTTAGTTCAGGC	ref_4994_RC	43	26	52	40	42	22	42	53	35	33
GCGTCTGCTCGCTTAA	ref_4994_RC	40	28	45	38	45	34	42	31	37	41
GTCTATTAGACTGATG	ref_4994_RC	16	11	18	21	15	24	17	11	26	15
CGTCTCTTTTTTTTCC	ref_4994_RC	10	13	8	9	6	11	6	7	10	7
TCCGCGGTGTGCACGC	ref_4994_RC	24	31	22	26	45	24	33	26	21	24
ATCCCGCATTATAACT	ref_4994_RC	36	20	22	31	42	22	40	18	30	19
GCTTCTTTCAATTGTG	ref_4994_RC	61	46	82	66	61	56	51	64	69	56
GTCCTAGACTCTACAT	ref_4994_RC	2	1	1	1	1	4	5	6	5	1
CATCCTGGTGAGAACG	ref_4994_RC	13	15	31	24	25	21	15	22	15	17
GGCGTTTTATTGATTC	ref_4994_RC	11	23	31	31	18	20	17	23	13	21
CCTAAATTACCAGCTT	ref_4994_RC	13	14	12	19	10	17	7	12	9	9
TTTGTAGCTCAGACGT	ref_4994_RC	35	56	59	47	53	43	59	33	45	39
TTTACGGCTCGATGGT	ref_4994_RC	0	0	0	0	0	0	0	0	0	0
CTAAAAACTTGCCTGG	ref_4994_RC	7	3	6	12	8	8	8	9	17	7
GAGTATGATGCATTTT	ref_4994_RC	0	0	0	0	0	0	0	0	0	0
ACGAGAATATGTTCTA	ref_4994_RC	89	67	98	80	77	78	77	78	74	61
ACAGAAAACACACGTA	ref_4994_RC	105	86	130	127	97	114	88	112	97	98
GAGCTCGCCACCGTCG	ref_4994_RC	0	0	0	0	0	0	0	0	0	0
ACAAGGGTCTTTTAGG	ref_4994_RC	24	28	36	39	38	31	34	22	29	28
CTATCTGTGAGTGTTG	ref_4994_RC	34	41	53	45	59	45	41	39	55	33
TTACCTCCGGTTTCGC	ref_4994_RC	0	0	0	0	0	0	0	0	0	0
TCTAGGTTGCGCACAC	ref_4994_RC	0	0	0	0	0	0	0	0	0	0
CGTGCGACAACCTACC	ref_4994_RC	5	7	12	7	6	4	10	5	11	5
CACTGGTAGGCCGTCC	ref_4994_RC	21	40	19	21	42	19	54	19	49	12
TGTCCTGCGGTACTAT	ref_4994_RC	0	0	0	0	0	0	0	0	0	0
AGGCTTGATATATGTC	ref_4994_RC	76	54	78	57	50	60	70	60	62	59
TCAAAACGAACAAGTC	ref_4994_RC	73	57	96	81	79	70	72	52	62	74
TAAACGTGAGGGGACG	ref_4994_RC	1	0	0	0	0	0	0	0	0	1
TTAGTGCATGCTAACC	ref_4994_RC	4	1	3	3	3	0	2	1	2	5
TTTTACACGCTAGTTT	ref_4994_RC	35	26	41	28	31	25	30	22	30	28
TAATTGGCATATACGC	ref_4994_RC	0	0	0	0	0	0	0	0	0	0
GCTCAGATCCGTTTAA	ref_4994_RC	12	15	14	12	15	16	17	12	12	14
ACATCTATAACTCTTG	ref_4994_RC	167	130	151	179	147	121	123	139	121	158
AGTTGTGTTTTTATCT	ref_5872_new	0	0	0	0	0	0	0	0	0	0
GCTCTTTCATAAATCC	ref_5872_new	287	108	304	196	119	233	103	222	127	238
TCTCCCGTTCTCGCAG	ref_5872_new	5	18	6	4	25	6	27	2	37	8
GATTCTAGGTCGCTAT	ref_5872_new	20	10	28	14	7	26	11	15	7	23
AAGCTGGCTGTATCGT	ref_5872_new	134	76	174	112	56	130	58	93	53	132
TCATCAGGCGTATTCT	ref_5872_new	161	88	173	133	61	136	76	161	100	134
ACTAGGCTGTTACCGC	ref_5872_new	60	37	50	51	38	50	27	42	21	44
GTGGCGCCATACTCTT	ref_5872_new	300	109	348	261	98	269	127	266	121	272
TCCTTTAAGTTGGTGT	ref_5872_new	240	98	245	185	134	238	106	178	128	221
ATGGGTTTTGGCGGCA	ref_5872_new	96	25	102	74	37	75	49	65	35	84
CTCGCTATACGTGCTT	ref_5872_new	163	63	149	122	66	123	61	124	60	164
CGCTCGTGTCGCCATC	ref_5872_new	39	17	45	37	14	22	27	31	19	30
GCTAGTATCATCAGTA	ref_5872_new	112	49	163	90	49	106	62	84	61	102
GGTTCCCGTAATTACG	ref_5872_new	35	12	35	24	12	34	21	30	22	19
GTTGGTGCCCTTGCCG	ref_5872_new	0	0	0	0	0	0	0	0	0	0
ACCTGGGGTGAGAGGC	ref_5872_new	0	0	0	0	0	0	0	0	0	0
CATAACTTGCAAGTGA	ref_5872_new	72	36	97	67	24	78	43	52	25	63
GGCGTGATTGGGGTGG	ref_5872_new	0	0	0	0	0	0	0	0	0	0
TTGTCGTGATGCTTTT	ref_5872_new	160	68	164	133	67	153	68	145	60	121
GTGGTCCGTTCTCATT	ref_5872_new	0	0	0	0	0	0	0	0	0	0
GTGTTAGGATTCATCC	ref_5872_new	79	23	65	54	33	60	39	63	44	55
GCCATATTTACCAAGG	ref_5872_new	0	0	0	0	0	0	0	0	0	0
GTCAGCTATGATTAAG	ref_5872_new	0	0	0	0	0	0	0	0	0	0
TTCGGTTTCGCCCCAC	ref_5872_new	398	144	381	275	176	306	184	320	177	332
AGCCGAGGAATTGCTC	ref_5872_new	0	0	0	0	0	0	0	0	0	0
TTTACTAAGGCCTGAA	ref_5872_new	19	9	31	17	3	15	7	22	11	25
TGGCTCTGTCGGTGGT	ref_5872_new	51	25	50	43	24	55	19	51	29	65
TGGCTGTTTCTTTTAT	ref_5872_new	32	9	51	28	26	34	14	40	11	44
TTACATTCTCGCTTGC	ref_5872_new	33	7	19	27	11	21	12	32	18	27
CTACTGGGTGTAGATA	ref_5872_new	68	23	66	48	37	57	24	43	27	56
GCTCTGTTAGTTGATG	ref_5872_new	47	22	40	36	19	36	15	39	19	48
TACAGCCTGGGCATTC	ref_5872_new	214	106	254	185	116	171	116	210	107	199
GATGTACGATGCCAAA	ref_5872_new	20	6	17	10	16	17	17	19	9	23
CGTGCATCGGGACCGA	ref_5872_new	140	61	166	103	56	104	38	108	56	91
CTCTCCTCTCGCCGGT	ref_5872_new	87	47	84	61	49	76	50	66	56	77
CAATTGGGAGGCCAAC	ref_5872_new	115	69	157	131	79	142	67	112	53	120
AGTGAAATCCCGCCAA	ref_5872_new	151	66	161	109	66	118	72	107	62	118
TCATCGTCGTCCAACC	ref_5872_new	348	127	420	271	138	285	165	314	151	323
CGTGGGCTCCTCTATG	ref_5872_new	27	5	23	14	10	14	16	15	11	19
AATTCTGAACTGCTCG	ref_5872_new	52	25	74	43	20	56	31	59	23	65
TCGTCGGGTAATGCTG	ref_5872_new	25	8	20	24	8	32	11	20	11	22
CCTCTTCCTTCGCCGT	ref_5872_new	71	78	60	50	82	45	85	43	99	46
TTAAAATTGGGACATC	ref_5872_new	15	6	17	13	6	15	12	9	12	4
ATTTCTAACCCATTTG	ref_5872_new	270	135	294	206	137	246	148	251	142	219
CTTCCGCTGATTGCTA	ref_5872_new	42	13	45	23	23	30	15	27	19	33
GGACTCCTGTTCGGCG	ref_5872_new	0	0	0	0	0	0	0	0	0	0
TGAGACTAAGGTATTC	ref_5872_new	197	81	182	165	69	150	71	140	63	116
CTTAGATGATTGATGA	ref_5872_new	58	28	65	46	24	65	31	60	24	57
AATTGGGTATGCGGAG	alt_455_fdr	159	69	149	115	80	109	94	139	91	84
CTTTTTAGTCCCACTA	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
AGTGCGGTATATATTG	alt_455_fdr	48	24	49	26	23	39	21	24	20	41
AAACGAGTGCTTTTAT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
GAAGACCTAAACGCTC	alt_455_fdr	15	9	16	21	14	17	5	17	8	11
CTCACCATCGTTCACG	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
CTTATTGGAAGTGAGC	alt_455_fdr	128	96	203	148	103	135	121	141	114	117
CTCTCCCAGGCTTTTG	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTCACCGTGCTCA	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTGATCATGTCGG	alt_455_fdr	130	75	143	101	82	147	84	129	86	128
TACCTTACACGACTGC	alt_455_fdr	123	69	135	111	104	84	73	107	83	118
GCCGGAGATTCGCTAG	alt_455_fdr	88	57	118	95	60	81	57	91	52	95
TGTAAGTTGGCCTTGG	alt_455_fdr	22	13	51	28	15	36	20	27	11	25
GCATCGAAAATTCGTT	alt_455_fdr	16	13	22	18	13	29	13	29	23	32
GCAATACGAGTCTCTT	alt_455_fdr	109	58	124	78	75	97	56	97	50	91
CATTCCCATTAAAGAA	alt_455_fdr	92	44	115	68	45	87	43	65	61	82
GGAGTACAAGCCCGCC	alt_455_fdr	34	20	48	46	21	36	29	38	14	43
ACTGGACATGAGTTCT	alt_455_fdr	48	28	61	49	35	44	30	46	27	45
CTGGATTCGAGACGTT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCGATGTGCTTTG	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
CCAGAATTTGCATTAA	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGGGACAACACGC	alt_455_fdr	11	13	13	13	6	4	6	11	9	10
GGGGTTCACTCAGTCT	alt_455_fdr	8	2	8	10	3	8	1	8	0	3
GAGCGCATACCTGCCC	alt_455_fdr	40	19	50	33	22	33	39	44	35	40
AAGTGTACAGACCACC	alt_455_fdr	21	15	30	13	9	13	23	22	20	25
GTACGCAGTAACTTCA	alt_455_fdr	153	73	184	147	84	151	84	114	69	153
GTAATCCCCATAGGCT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
CCTATGAGATATTCGC	alt_455_fdr	170	96	211	149	123	185	94	159	96	152
CCGGGATAAAGATGAA	alt_455_fdr	23	12	21	17	14	11	13	22	18	19
GTCGGCCTGCTGAGTG	alt_455_fdr	3	5	4	0	2	1	3	2	4	0
TCCTCATGTTGCTGAT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
TGTCACCCCGGAACAT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTTGAATCTATA	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
ATCGTATTCTGGTGTA	alt_455_fdr	41	16	36	37	17	25	14	25	24	25
TAATCTGCCTACATTG	alt_455_fdr	238	125	307	236	147	250	144	247	158	225
ATCCGTTTAATGATGC	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
CTTGCTCGTCTCGCCT	alt_455_fdr	58	29	50	36	18	42	28	48	29	31
ATGGGATTCTATAGTT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
TAGGACGCTACTCATG	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTTATTTTTTTAA	alt_455_fdr	9	8	13	8	2	8	6	7	3	7
CCCGGGAACACTGATA	alt_455_fdr	46	44	52	46	48	39	47	32	51	30
ATGTTGGTTTCGTTCT	alt_455_fdr	88	37	110	50	54	70	45	92	36	93
AGCTCGCGCGACCCGT	alt_455_fdr	74	39	80	59	32	67	35	55	45	53
AGGTTTTCATAGCTTT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
TTACCCCCATGAGGTT	alt_455_fdr	60	25	68	35	28	42	31	46	29	41
GTCTCTAACTCCGTTG	alt_455_fdr	70	43	113	81	49	75	56	80	60	65
TTCCTCGTATCGGAAG	alt_455_fdr	66	38	44	65	24	53	28	52	33	64
CTATCGAGGGGGTGTC	alt_455_fdr	127	71	157	143	78	129	81	107	80	120
CATCACGCACTTTTTG	alt_455_fdr	159	83	166	143	57	141	64	122	73	123
TTTGATGCGCCATTTC	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCTCCTTCCTTTC	alt_455_fdr	23	16	28	20	10	22	14	17	15	13
TGTACGTGCGTATTCA	alt_455_fdr	39	18	35	30	12	29	21	30	17	16
CATTAGCGAAGTCTCG	alt_455_fdr	71	33	65	54	42	52	34	63	50	41
CCCCTGCGTTTTTAGG	alt_455_fdr	16	11	17	22	9	14	7	15	10	9
CTGGCAGCCTTACTTA	alt_455_fdr	68	38	95	61	53	57	64	64	53	54
CTGCCAATGTAGCATT	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
TCACCTGCCATGTCAC	alt_455_fdr	86	56	104	74	49	85	47	66	65	59
TCAATCAATTGCGCCG	alt_455_fdr	47	30	53	42	24	38	23	35	24	36
TAATTGCCACATCATA	alt_455_fdr	142	66	158	139	73	134	74	153	86	126
CCTACATATGGCGAAT	alt_455_fdr	59	34	49	71	28	60	29	46	39	70
CTTGGGGGGTCCAGGA	alt_455_fdr	0	0	0	0	0	0	0	0	0	0
AGAAGGCGGTTCAATA	alt_455_fdr	137	74	180	109	73	147	69	126	86	132
ACTGTATCCCCTCGGA	alt_455_fdr	150	88	189	193	94	135	104	162	101	163
TCCCATGATAAATTCC	alt_455_fdr	53	30	69	53	23	63	36	58	38	45
AGCCTCTTGGTAGCGC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GCATGCCAAAAAAGAG	ref_850_RC	10	8	23	8	11	6	8	13	12	4
CTCTGCGAGAAAAATA	ref_850_RC	6	5	6	7	5	6	6	8	4	4
TCCACCGCATGGTTCT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GGCTTCCTCTTGGTAT	ref_850_RC	57	72	70	55	74	60	69	45	61	48
TCCCGTTTGGATAGAG	ref_850_RC	1	6	4	1	3	2	3	0	1	0
ATCTTTACAAATTGGT	ref_850_RC	27	26	27	24	28	19	37	19	29	15
TGGTACGGCGAGGCTA	ref_850_RC	328	24	352	362	29	345	30	287	31	280
TTATTAATTCATCCAT	ref_850_RC	163	141	187	170	139	159	163	127	147	120
GTTAATGGCTACATAA	ref_850_RC	3	5	2	1	2	7	4	2	7	4
TTGGTAGGTTACTTAA	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GTACTCGGGTGCTTCG	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GCGTTACTTAGGAACT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GACGGTTTGCTTAAAC	ref_850_RC	1	4	2	4	1	6	7	1	3	1
TGAAACTCGACTAAGG	ref_850_RC	7	6	3	6	13	6	8	4	7	12
ACTCGAAAGTTAGACG	ref_850_RC	24	25	26	24	41	24	43	28	31	29
CTGTCTTCGTTTTTCT	ref_850_RC	8	4	11	8	6	10	2	5	7	6
AACTGGCATTCCACTT	ref_850_RC	10	6	6	7	9	6	18	5	21	4
ACTATGACCAGGTGGC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTGTTCCATCAC	ref_850_RC	10	16	13	13	18	12	16	17	19	3
CTTCCCCTTTCGGCAA	ref_850_RC	3	5	6	3	8	4	21	3	10	2
ACATGGATATGTGTTC	ref_850_RC	17	40	21	14	19	19	30	5	47	23
TTCACGTACCTGATCA	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GCTATATCAGTCTCAT	ref_850_RC	26	30	36	31	26	23	37	29	49	17
TTATTTCGCTAGACTT	ref_850_RC	36	53	29	33	54	24	42	44	47	29
TATATTTAGGCACTAG	ref_850_RC	0	0	0	0	0	0	0	0	0	0
AGAAGTCTACTGTTAC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TCCCAGCTCGGTGTTT	ref_850_RC	201	212	219	176	244	167	232	184	271	166
TCAGAAATCTACCTGC	ref_850_RC	41	49	49	37	48	26	49	22	37	24
TCTAACCCGTATCTTC	ref_850_RC	32	38	58	46	63	35	60	38	77	37
TCATTCTCGTATGACA	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TGTAACTCTAATTCAA	ref_850_RC	16	17	20	17	16	15	14	11	16	10
CTTAGTCGTTGCTCTG	ref_850_RC	27	34	28	33	57	13	35	17	50	23
GCCTTCTTATGGGTAC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
ATTCTAAGGGTCCCCA	ref_850_RC	9	14	10	13	6	6	8	10	8	3
AAATCTTTACGACAGT	ref_850_RC	64	54	55	69	71	65	68	45	69	46
TATAGGAGTGCTTTAT	ref_850_RC	40	68	61	53	64	49	80	53	53	50
GCAGGTCCGGTGGTAC	ref_850_RC	24	28	21	18	24	14	24	21	28	11
TGCACCAGCGCCGCAC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TTACCATATGCGCTCC	ref_850_RC	49	68	65	59	68	48	60	57	80	59
TCAAAATACCTCTGCA	ref_850_RC	17	33	29	22	30	25	40	22	37	6
GTCACTCCATGGCATC	ref_850_RC	18	79	32	28	87	18	76	26	75	11
CGCAGCGTTTTTGCTC	ref_850_RC	11	19	23	15	22	9	18	17	21	13
CGGAAGTATACTACTT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TGCAGTACTGTAGTCT	ref_850_RC	8	21	17	18	14	21	22	9	21	20
CGGACTTGTATGGTCT	ref_850_RC	4	6	11	9	11	8	6	5	9	14
ATGTGCATTCTAATGT	ref_850_RC	23	29	31	32	34	28	34	20	34	26
TTTCCCGGTCAGCCTT	ref_850_RC	73	144	80	76	142	64	132	82	127	75
GCACGTATTCTTCACA	ref_850_RC	54	69	63	62	88	73	72	65	81	55
TCGGACCGGTTGGGCG	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TTTTGGAGTTTCCTAG	ref_850_RC	6	8	12	6	11	14	5	10	6	8
GGGCCTGTTATGAGTA	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TTCTGCATTGTAGTGG	ref_850_RC	8	19	15	12	15	9	11	14	18	6
CCACCCAAGCTCTCTT	ref_850_RC	7	27	20	13	28	6	40	14	23	5
TATGTCACGGGTACGT	ref_850_RC	34	37	29	28	38	32	33	23	36	23
GCCATGGACCGCGCTT	ref_850_RC	3	16	5	5	18	5	24	3	16	7
ATTCCCAGTACATGTC	ref_850_RC	23	43	33	32	42	28	35	30	32	34
ATCGAAGGGTCGCTTC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
CGTTCAACCTGACTTA	ref_850_RC	45	100	69	76	103	51	94	55	93	48
TGGCGCTAGGGGGGTA	ref_850_RC	1	1	1	4	1	2	2	1	0	1
GAAATTGACGTAGCGC	ref_850_RC	15	24	17	6	21	11	14	8	19	7
GCTGTACATCCGTCGT	ref_850_RC	20	19	19	11	20	13	17	18	23	24
TAACGAAGGTGGGGGT	ref_850_RC	53	46	60	47	66	59	65	47	52	53
CTACCTCTTTTGGGTT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TGTTGTTAGTAGGGCA	ref_850_RC	38	42	43	34	34	27	35	35	31	33
TCCCTTCTCTTATAGG	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TACAACTATAAATCAG	ref_850_RC	147	130	171	152	125	127	162	141	187	108
TTTCTACGGATTATTG	ref_850_RC	15	19	13	10	19	13	14	14	13	22
GAGTTCGACAATTACA	ref_850_RC	52	58	58	58	44	43	53	52	64	45
TGTCGTTGCAATACTT	ref_850_RC	3	4	4	6	5	0	4	3	3	6
CTATTCGATCCTGGGG	ref_850_RC	67	80	61	58	80	64	92	65	83	61
GGCTACAAGGTCCAAT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
CAGACATCCCGTCTAG	ref_850_RC	72	58	72	67	62	48	58	49	66	48
GCATGGTCGAGAGGCT	ref_850_RC	10	27	23	16	23	18	28	12	31	15
GTTCGAACTGGCACTT	ref_850_RC	3	1	1	3	1	0	3	0	2	1
GTTGTCTGCGAGCCGC	ref_850_RC	35	16	27	24	11	27	28	24	23	18
GTTTCCCACTCAACTT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
AAATAGTGCCAGTCCT	ref_850_RC	33	28	37	38	27	26	45	37	36	40
GTACAATGGTCTTGTA	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GCCAGAAATTTGCAGC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TGGACTCATTTGTCCT	ref_850_RC	7	15	18	10	17	8	23	17	15	14
CTTTAGGGTCTCGGCT	ref_850_RC	32	42	35	32	51	35	43	23	42	21
GAGAGTCATTACGGGT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
AGTCCTGAGGTGGGTC	ref_850_RC	23	27	32	30	19	20	26	26	20	13
GGTTCTGTTCCTTTGA	ref_850_RC	24	27	18	31	36	20	41	23	29	23
CCGCATGTCCACCTGC	ref_850_RC	29	66	32	28	63	29	58	29	63	19
GATTGATACCCCCTAA	ref_850_RC	10	9	5	9	8	8	6	4	8	4
GTTGAGTTCTCCGTTA	ref_850_RC	6	11	10	12	8	6	9	6	9	5
TATTCGCTATCTTCGT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TTCAGTTTTGCATGAT	ref_850_RC	17	33	22	20	35	26	32	16	31	16
CTTGCGAAGGCTTAGT	ref_850_RC	9	24	16	10	24	9	19	7	30	13
TCGCCTTGAAGAGGGC	ref_850_RC	22	20	30	15	11	21	21	13	27	19
TTCAATATCTGCTAAT	ref_850_RC	35	13	28	16	20	16	25	15	24	32
GCATATTACGGGGTTC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
AACATTTGGTGCACAC	ref_850_RC	0	0	0	0	0	0	0	0	0	0
CTGAGCGCATAAGTAG	ref_850_RC	14	23	31	18	24	16	29	13	29	18
TATCCTTACAGAGTCT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TAATGCGTGTCTTAAA	ref_850_RC	0	7	3	3	3	4	3	1	6	6
ATATTAATTCATCCAT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GCCCTCTCGTCATTGA	ref_850_RC	28	27	37	23	50	43	54	35	43	31
TGCCCGTTCGTACATG	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GTCATGGCTTTCTTTA	ref_850_RC	0	0	0	0	0	0	0	0	0	0
GAGGCATGTGACGCTT	ref_850_RC	54	82	72	85	78	63	85	76	84	63
GTGTACACCCTCGAAT	ref_850_RC	0	0	0	0	0	0	0	0	0	0
TTGCTTCCATTTCGCT	ref_3879_missing	31	54	31	30	62	30	71	29	55	26
ACCAATTTCTTCACAG	ref_3879_missing	52	155	70	69	157	59	163	77	160	61
GTTTAACTGCTATGGC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TTTAACCTCTCGGCCA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TTATTCTCGAAAACCT	ref_3879_missing	2	10	0	4	10	2	4	3	10	3
TGGTTTTTCTTTGCGT	ref_3879_missing	11	14	6	9	14	9	17	1	20	7
ACTACTCGTGACTCCA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TGGCATTCTTATACGC	ref_3879_missing	24	64	20	16	53	14	41	20	37	16
TCCCTAGCTAGGTGCT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GGGGTCTATCTATAGT	ref_3879_missing	15	35	18	23	32	10	30	11	38	10
CTATATACGATTTCTC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CAATAACTGCTAATCC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TCGTTGCCAACGATTG	ref_3879_missing	5	27	17	21	34	20	43	21	32	13
CCTAGCCTGCTGCACT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GGATTTGAGCGCTGAA	ref_3879_missing	80	194	103	97	187	100	170	76	208	63
GCTATTCGGGTCTGCA	ref_3879_missing	11	37	19	16	37	23	45	21	47	14
ATGAAATAAGTATCGT	ref_3879_missing	14	38	19	10	25	15	38	18	40	11
CGGTCAACTCCCGATG	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CACTGTGTCTCTCTCA	ref_3879_missing	27	68	38	32	92	36	92	32	79	38
CTACCGGTGAATATGC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
ACCACACGTGCTCCGC	ref_3879_missing	30	85	40	37	100	38	96	37	106	31
TGATCGGATTCTTCCA	ref_3879_missing	19	48	25	14	43	26	34	19	43	18
TCACTCGGGTGATGTA	ref_3879_missing	16	36	26	27	51	21	49	24	56	20
CAGTCGGGCAGGTCGG	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTACAATCCCAA	ref_3879_missing	1	7	0	2	14	4	8	0	5	6
TGATAGGTATTAATTC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CCCCGTGTGGGTGTGT	ref_3879_missing	4	15	2	3	9	1	16	1	17	3
AACTTGGTGTTAGAGC	ref_3879_missing	63	122	54	66	97	62	121	47	116	41
GTCTTTAGCAAAACTA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TAAGCACGTATAAGGG	ref_3879_missing	29	68	36	29	55	36	71	18	57	22
CATTTATCAACCATGT	ref_3879_missing	22	71	40	30	65	38	51	25	76	31
CCGGGGTAAGGAGACG	ref_3879_missing	6	46	3	4	40	12	37	9	43	8
CTACATTGAGTTTTTT	ref_3879_missing	4	6	4	3	8	3	8	1	6	3
CTCCTTTCCAATACCC	ref_3879_missing	7	53	7	5	51	5	41	8	48	4
CTAACAGCTTTTGGTT	ref_3879_missing	28	48	24	26	34	23	40	20	39	20
TGTAGAAGTGCTCTTA	ref_3879_missing	6	11	10	6	11	7	10	9	14	7
TCATGCATTATGGTGA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GCCCGTTTACTATGTC	ref_3879_missing	4	1	0	1	2	1	5	2	0	0
TGAGGCGGTTAGTTCA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
AACTTGTCTTATGGCT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GGTTCTAAGGGAGAAC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TGGGCACATGTCCTAC	ref_3879_missing	11	41	19	5	24	7	32	7	25	9
GGAATACTGTATAAAT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GCACCGGGGCTCCCTC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CTCGTTGAGCCCACGA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GGTCCGGTTTATTATC	ref_3879_missing	3	8	8	3	15	3	8	5	10	4
GAATCGCAGCGCCATA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TATCTGCGGTCCACGC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CGTAAAGTAAGTGTTT	ref_3879_missing	48	97	46	33	76	36	92	54	115	35
CCCTGATAGGAGGATC	ref_3879_missing	9	9	5	2	16	1	14	3	12	3
TTGCCTATTACGCGCC	ref_3879_missing	3	9	8	1	18	2	20	7	14	1
TATATCCCCTAACGGT	ref_3879_missing	0	8	3	2	4	2	8	1	6	2
GTAGTATCGCATTGTA	ref_3879_missing	15	13	11	2	16	4	17	7	22	10
TTTTTCCGCATAATAA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TGAACGGGAGCATTTC	ref_3879_missing	7	14	11	6	11	4	8	7	14	7
TCAGGAAGGTGATACA	ref_3879_missing	18	21	11	5	26	11	24	7	25	6
TTATACTTGATAGATA	ref_3879_missing	7	13	4	4	14	4	7	7	8	4
TAAACGGTCCCTCGGG	ref_3879_missing	13	53	22	29	63	23	54	17	49	18
AGTTTATTATATCCAA	ref_3879_missing	0	3	2	3	2	2	0	0	5	2
AAAGGCTACATAAATG	ref_3879_missing	13	27	22	8	23	11	13	11	24	7
ATTCATGGCCGTGGGC	ref_3879_missing	5	24	14	9	21	10	19	9	24	6
CTTGTTAGTGTATTGG	ref_3879_missing	15	51	13	21	33	18	43	18	51	15
CAGTGGCTGGCAGTCT	ref_3879_missing	23	46	18	12	41	7	41	25	34	15
CCGTGTCTGGGATCTA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TCATTGGGTCATAGCT	ref_3879_missing	18	41	21	18	39	15	40	21	46	12
GCTGCCGGCGTCAAAC	ref_3879_missing	14	31	19	17	39	15	36	17	33	11
TGAATGGTTTCACACC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TGCGCGAACGACGGCC	ref_3879_missing	11	12	2	11	11	6	9	3	15	15
GACCTTCGATGCTACG	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GTTTTATCTTCTTATC	ref_3879_missing	20	32	22	16	28	26	41	13	52	25
CCATTAGGCAAGTATC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TACACAATCAATAGCC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GTTACTACTTTTTGGT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CACAGTTAAGGTAGTT	ref_3879_missing	5	34	12	7	32	13	50	8	49	5
GATTTAGTGTAGTACA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CTGACCTCGTTTGTGG	ref_3879_missing	2	8	4	4	19	3	7	5	7	3
TTCTGCAGCCAGATTT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TATCATACGGCCTTTG	ref_3879_missing	25	37	25	21	38	24	35	16	43	18
TACTCCCCCGTCTAAC	ref_3879_missing	0	6	0	2	3	0	5	0	3	0
CCCTCGGTGGCGTTTT	ref_3879_missing	23	80	32	17	61	25	84	27	61	30
GGACGTTGGCTTAATT	ref_3879_missing	20	57	23	24	63	32	51	22	47	31
GAACCTCTGTTAATCT	ref_3879_missing	7	23	18	20	29	13	29	7	31	10
ACCCTATCAGGGTTGT	ref_3879_missing	2	5	5	6	10	5	15	2	8	8
GTTGACCTGTCAGAAC	ref_3879_missing	10	24	14	8	21	7	23	9	16	3
TTGTACCGTTTCCTGC	ref_3879_missing	51	83	55	35	99	43	86	44	83	39
CCTCCCTCGATCTGGC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GTCTTTTGCAGACATC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CGGTCGACTCCCGATG	ref_3879_missing	2	19	5	2	27	0	20	0	39	0
ACAGCCAACATGTTGC	ref_3879_missing	0	2	0	0	4	0	3	0	7	2
AAAGCTATCTTTTCAT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CTTGGGTGGATTCTTA	ref_3879_missing	29	38	34	26	46	22	48	22	57	18
TGTTTCGCACAGGTGG	ref_3879_missing	2	1	2	1	4	3	11	3	8	1
AACGATGTGCGAGCCC	ref_3879_missing	21	40	32	22	32	16	43	21	43	27
GAGCTCCCCTCTTCGG	ref_3879_missing	1	9	1	0	9	2	10	1	6	1
CGTAGCTCCTTTACGG	ref_3879_missing	15	22	15	12	26	10	17	10	26	8
ATGCCCATATTATGCT	ref_3879_missing	16	40	18	15	39	19	54	18	55	21
GTCCTTCGGCACTATG	ref_3879_missing	5	18	6	7	13	7	13	12	13	6
TAAGTAACAAGTTCTC	ref_3879_missing	4	6	4	1	3	3	5	1	7	0
GTATCGTCACACCGCC	ref_3879_missing	8	17	9	11	20	10	6	5	28	10
ATCAGCTGCGTACTTA	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
GCTCGTGTTAGGTAGT	ref_3879_missing	4	10	4	3	6	1	10	5	4	2
TCGGCTAAAGAGTTAA	ref_3879_missing	2	3	2	1	2	2	4	3	8	1
GGTCCTAGCGCTCGGT	ref_3879_missing	26	40	25	16	51	19	40	19	41	25
TCTTATTGAGCAATTC	ref_3879_missing	0	5	1	1	4	0	8	1	6	1
TTTTGTTCACGTCTTG	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CTGAAAGAATCTTTCT	ref_3879_missing	11	33	10	25	25	11	25	12	17	6
TCGTAGCTTACGCCAC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
TCCCGGGTAGCGTTTG	ref_3879_missing	12	46	22	18	53	8	40	15	33	27
TCGAAGCTTGCGGTCG	ref_3879_missing	1	7	3	1	12	1	7	5	6	4
CTGCAGGGATCAGTTT	ref_3879_missing	3	10	3	1	4	3	8	1	2	2
ACACTCCCCCGTACTT	ref_3879_missing	4	63	2	1	70	2	56	2	58	2
CGCTCATTTGCCCCAA	ref_3879_missing	0	3	1	0	8	0	10	1	10	0
GAGATTTGTCATCATT	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
AAAATACATCGTGCGG	ref_3879_missing	50	106	47	50	80	38	93	38	87	45
GACGTTTTAACCGTGT	ref_3879_missing	17	16	9	13	13	20	21	10	24	11
CTTATTCCTAGGTTAC	ref_3879_missing	0	0	0	0	0	0	0	0	0	0
CCTACGATGGTTGTGC	alt_1834_upstream	27	36	48	25	42	49	35	34	49	31
GGCGTTTGTGCGATAT	alt_1834_upstream	39	24	40	25	45	32	36	23	31	29
GGGGGCTTAAGACGGA	alt_1834_upstream	44	29	50	36	32	48	36	35	42	37
GGGTGGCATTCAAGTC	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTGTTCTGTTTG	alt_1834_upstream	56	39	58	39	20	55	32	44	44	41
CCTATCTCGTTAATGC	alt_1834_upstream	36	36	41	33	28	24	24	19	27	13
GTCTACGCAATTCTAT	alt_1834_upstream	7	2	4	5	3	3	2	4	6	2
GAATAAACACTCTCGA	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
GATGCCTCATCGGACC	alt_1834_upstream	5	6	5	11	4	8	5	10	10	6
TAGTACCAACACCGGC	alt_1834_upstream	17	13	10	12	14	9	12	4	17	12
CGCATTGCGCCGCTAT	alt_1834_upstream	23	25	24	19	12	16	15	12	15	8
CTTGCAAGAGTTCTTC	alt_1834_upstream	35	44	38	59	36	35	26	33	39	30
AATGGCCTTCGTCACT	alt_1834_upstream	11	10	12	11	16	8	7	9	8	12
ACTCTTGTACGTCCGG	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGCTGAAGATTGC	alt_1834_upstream	10	6	9	8	5	1	2	8	6	10
TGTTTATTCCAGTATG	alt_1834_upstream	75	68	113	84	76	99	58	91	108	73
AGGGCACGTCTTGCTT	alt_1834_upstream	4	5	12	4	8	3	10	6	6	4
GTCAAACACAGTCGTT	alt_1834_upstream	5	2	8	9	8	13	3	6	6	4
CTTTCTATGTCACTTT	alt_1834_upstream	145	138	162	127	115	120	127	129	112	109
TGCTTTCGAGGTTAGG	alt_1834_upstream	30	16	19	17	27	32	21	17	27	12
CAGCCTGGTTCCTCTA	ref_1834_upstream	32	34	33	35	25	17	38	27	50	22
CGAAAAATCTCCTGGT	alt_1834_upstream	71	64	68	61	54	61	78	62	78	55
GATGATCTCTACTTGT	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCTCTCTACGTAA	alt_1834_upstream	47	65	44	35	68	52	62	46	54	34
GTCATGTGCGGATAGG	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
CTCCGGGACCTTTATG	alt_1834_upstream	56	40	62	65	57	60	40	55	50	35
GCGGGTACCTAGCATA	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
TAACTGGCTCGTCATT	alt_1834_upstream	28	27	37	20	29	31	23	25	28	33
CGAACGTCAGCAAGCG	alt_1834_upstream	29	40	43	23	32	31	33	32	20	25
CTATTGGCGCGGTAAA	alt_1834_upstream	23	14	23	26	19	25	23	19	17	26
ATCGTCGCCCAGTGCG	alt_1834_upstream	2	0	3	0	0	3	2	0	4	6
AGTATACGAAATAGCC	alt_1834_upstream	54	50	68	65	41	74	65	71	60	44
GGCAGGCTGCTCCCAG	alt_1834_upstream	8	4	9	7	3	9	2	7	8	4
CTTTGTTAGTCTTCAA	alt_1834_upstream	7	8	2	6	11	3	6	0	1	3
TGAGAGTCTCCCGTTA	alt_1834_upstream	12	7	6	9	7	6	8	9	10	7
TATCCGAACTATCGTT	alt_1834_upstream	1	2	5	2	1	4	3	2	7	2
CTCCTACATCGTTGGA	alt_1834_upstream	0	0	1	0	0	0	1	1	0	2
TGTAACCATTAGGTAT	ref_1834_upstream	72	65	107	97	64	80	53	57	67	76
TTGAGCGGCGACACTT	alt_1834_upstream	41	21	43	19	31	36	30	32	27	34
TCGTTCCGCCTTCAAA	alt_1834_upstream	6	3	6	12	3	5	6	8	3	3
AACATTGAGCACGACC	alt_1834_upstream	1	2	5	1	2	2	0	6	2	2
TCGACGGGTGTTGGCC	alt_1834_upstream	61	83	88	67	102	70	74	87	74	68
AGATGGCAGAAATTTG	alt_1834_upstream	318	267	384	294	265	300	264	307	270	264
TGGGGCTATTCCGTGG	alt_1834_upstream	47	41	57	48	35	43	39	47	43	38
TTTGGCGTCATTTCCG	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
GATTCAGGTAAGGCGC	alt_1834_upstream	81	60	101	94	72	77	59	66	70	60
ATTTCACGGAGATGGT	alt_1834_upstream	10	11	38	28	21	23	26	30	22	20
GAACTGTTAGGTTGAC	alt_1834_upstream	107	108	102	89	100	78	82	82	94	83
GTCTATTAATGCCACA	alt_1834_upstream	119	93	161	113	103	109	97	104	91	103
GTCCTTCGATTTGGCT	ref_1834_upstream	120	89	125	91	104	91	107	104	118	101
GAGTGTATAAGTTGCA	alt_1834_upstream	66	79	86	75	53	77	78	74	88	79
CTAGTGTCTAGAACAG	alt_1834_upstream	0	0	0	0	0	0	0	0	0	0
AGTATTCAGTGCTCTT	alt_1834_upstream	12	9	18	9	11	14	12	23	13	18
ATCAGCGCTCCAGGAT	ref_588_fdr	5	20	6	5	6	7	9	7	10	8
TCCACTCTCTCACCGG	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
TATAGCTTTTTATGTA	ref_588_fdr	72	63	90	104	75	78	68	88	77	78
GACCGGTTGGACCCAG	ref_588_fdr	19	22	36	19	18	27	12	21	25	12
TAGTGCGTTTCTGCGT	ref_588_fdr	151	177	182	176	150	165	198	161	184	160
ACGTTGATGGTTATTA	ref_588_fdr	247	244	312	276	242	251	257	260	286	242
ATAGTTTTGTGCCGAG	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
GATCTATGGAGCACTT	ref_588_fdr	45	37	48	61	43	62	37	51	27	40
GACTGCGTTTCGTTTG	ref_588_fdr	0	0	0	0	1	0	0	0	1	0
GCTGTTTTACAACCGC	ref_588_fdr	60	48	76	78	63	64	73	45	68	53
CTTAAAGTTTGGGTGC	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
AGTGTGTTCAACTCCC	ref_588_fdr	25	33	23	23	38	25	37	20	29	16
TCGCTTTATTACTGCC	ref_588_fdr	251	194	325	295	173	236	232	182	244	197
CTGCCGCGGCTTGTTT	ref_588_fdr	23	37	37	26	42	31	25	34	21	23
ATTCGTCGATAACGAA	ref_588_fdr	63	50	51	42	52	54	41	37	43	32
CGCGGCGCCACACGTT	ref_588_fdr	4	10	11	6	9	12	11	5	8	12
TCACGTTGTCGTCCGT	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
TTCAAACGGTCATACA	ref_588_fdr	53	45	70	70	47	63	54	58	52	69
TCGATCGATCTGAAAA	ref_588_fdr	11	17	19	12	19	22	21	24	15	17
GACACACTCGACACTA	ref_588_fdr	50	63	60	46	51	61	48	57	51	36
CCCCCGTCATATATGG	ref_588_fdr	1	3	1	3	8	2	7	1	4	0
TCTACATCCTTAGCTG	ref_588_fdr	64	63	62	56	58	65	74	46	77	57
CTCGCTTCGTCTTTGA	ref_588_fdr	48	49	52	37	52	36	47	36	41	30
CTGACACTTTACCAAC	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
TGACTACTATGAATTT	ref_588_fdr	90	74	106	90	86	104	79	76	111	69
TGTGCATGCCATGTTC	ref_588_fdr	30	28	36	37	34	22	28	43	26	35
TTGTTTGTTCCATACC	ref_588_fdr	115	95	109	98	95	93	98	78	94	72
CGTTAAGAACTCGAGC	ref_588_fdr	46	49	59	44	38	47	27	53	58	38
AGACTCCTAGTCACTT	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
CTCTGATCCAATTTCT	ref_588_fdr	33	25	34	47	32	21	31	26	29	29
TTATTATACAACTTTT	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
GGGAAGAAGGCACTAT	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
GATTTTGAGAGTGGGG	ref_588_fdr	94	105	81	89	111	81	105	106	106	70
TGCGGAGCTTTAGGCG	ref_588_fdr	20	6	24	16	10	21	14	13	10	10
TTCGTCTTGGCGCGGT	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
TACCGTCTTACTGATT	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
ATGAGTTCATGTCTGC	ref_588_fdr	0	0	0	0	0	0	0	1	0	0
TATTCACTAATCGTCT	ref_588_fdr	62	61	81	65	51	64	60	49	74	43
CCATGTCGTTGCACTT	ref_588_fdr	0	0	0	0	0	0	0	0	0	0
TCTTAGTCGTGCTTGT	ref_588_fdr	6	5	5	8	3	3	5	4	14	6
CGTGCGTGTTATTCTG	ref_588_fdr	48	39	57	59	44	62	42	49	55	59
TTGACCTTCTCGCACA	ref_588_fdr	40	19	29	27	19	23	29	38	24	28
GGCACGCTCGACGCAG	ref_588_fdr	9	7	13	6	1	7	11	6	7	11
AGTTTGGAAGCTCTTG	ref_588_fdr	12	10	16	13	11	12	18	18	12	9
AAGATTCCTAGTAGCT	ref_588_fdr	21	17	36	26	27	27	24	20	29	17
ACTAGCTCAGATAGTT	ref_588_fdr	35	53	50	45	43	39	48	37	46	46
TTCAATTATGTGCCGG	ref_588_fdr	4	1	5	11	5	9	16	6	17	6
CGGCCAGTGGGTAGTT	ref_588_fdr	61	73	54	43	86	41	91	59	93	58
CTCGGGTTTGTATGTG	alt_5125_upstream	21	11	20	28	11	16	12	12	18	22
GAAGAACTTGACGCGG	alt_5125_upstream	32	32	48	33	28	46	24	30	37	41
GTGTAGATTTAACACT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCTGATTTTCGCT	alt_5125_upstream	21	22	40	20	25	29	20	36	31	27
CTATTAGTCACGGTTT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTCGCCAAGCGCT	alt_5125_upstream	411	266	463	406	318	368	320	359	284	358
TTGACGGCCTGTTTTT	alt_5125_upstream	61	58	89	69	36	62	39	52	34	53
CTTCCACCTATGGGTT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
ATTAAATATCATGGTG	alt_5125_upstream	40	28	56	41	29	50	21	46	31	26
TCTGGCTTCCTATGGC	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
ACGCGTTGTCACGAGC	alt_5125_upstream	54	41	81	67	30	55	50	49	41	53
TGTTCGAAAATACCCG	alt_5125_upstream	22	21	18	29	15	18	10	24	16	24
GCTCGGTTGGCGATAA	alt_5125_upstream	46	28	51	45	30	35	27	41	33	39
TTACCTTGTGCTGTGC	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TATTTTGTTTTCAATT	alt_5125_upstream	58	33	66	79	40	67	35	54	23	56
ATACAATAGTTACATT	alt_5125_upstream	39	23	28	25	14	13	21	25	21	24
TCGCTTCTGGGGACCT	alt_5125_upstream	24	19	30	29	18	31	19	25	26	29
GTCGAGAATCACTTCT	alt_5125_upstream	14	8	13	8	15	12	2	21	9	11
CCATATCTCCGGCAGG	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GGATGCTAAGGGGCAA	alt_5125_upstream	14	9	8	2	8	11	8	7	5	8
CATCCGATCGGACCCC	alt_5125_upstream	10	6	12	18	11	7	17	6	1	11
TCGTATCTTTGTGGGG	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTGCGCGTCCCAG	alt_5125_upstream	37	27	42	42	17	36	14	30	26	33
TCCGTAGTTCCTTATT	alt_5125_upstream	39	27	37	44	32	33	33	51	26	41
GTTGTAAGGTGATGGT	alt_5125_upstream	13	11	11	12	9	16	11	15	22	10
TGTTGCCACACAAATT	alt_5125_upstream	29	12	26	21	26	26	12	21	22	10
TGCTTGGGATTCTTCA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
CTGACTACATGGCGTG	alt_5125_upstream	55	44	84	48	47	46	48	67	47	47
CTGGCTCCTTACACCC	alt_5125_upstream	58	64	90	74	70	53	44	66	66	60
TCAATCCCAGGCATCT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTGGTAGATTCCT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
CTTTCTTCGCTTTTTA	alt_5125_upstream	102	59	101	103	49	90	64	94	59	76
ACAAGAGCCGCGTCTG	alt_5125_upstream	201	125	190	203	126	169	123	188	124	156
CGATACGCTTTTAAGG	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TTGAAACTACCGATTG	alt_5125_upstream	47	26	60	40	39	42	13	27	32	31
CAGAATCGTTTATTGA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TGTACCTGCTTTGTGA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
ACCATATGGGTAGGAA	alt_5125_upstream	166	110	158	130	135	154	122	139	139	133
TCTTAACCAAACTGGG	alt_5125_upstream	66	61	97	88	69	71	85	64	74	69
GCCGGCTTCACCAGGA	alt_5125_upstream	56	43	73	60	52	45	34	61	39	59
GATGTGTAACTTCGTC	alt_5125_upstream	26	17	30	31	15	26	22	20	27	19
AGTACTTGTAATTCTT	alt_5125_upstream	110	91	143	140	80	108	61	97	76	118
GGCCATAGTTTGATGG	alt_5125_upstream	80	35	50	62	28	45	35	45	29	50
CCCTCTTTGAAAGTTT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TGAAGTGGTCCCAACG	alt_5125_upstream	39	19	47	52	36	46	30	39	26	32
CACTTTCCTATCGAAT	alt_5125_upstream	1	0	0	1	2	1	0	1	1	0
TTGTAAAGTTCATGAG	alt_5125_upstream	153	112	176	129	106	128	106	126	132	136
TGGATTGGGTGATCCA	alt_5125_upstream	4	12	6	12	8	7	6	10	3	7
TTCCCGAATCTGCTAA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TCATCGGCATTGGCCA	alt_5125_upstream	75	64	94	67	50	47	51	75	52	59
TAGTTAAGTGCCTGTC	alt_5125_upstream	42	31	44	47	27	45	41	40	39	46
CAAACGCGGCCCCGCT	alt_5125_upstream	8	8	8	8	4	8	3	9	5	11
ACCGCCCCACGGGTAT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGATAGCAATCTG	alt_5125_upstream	106	75	170	125	82	108	95	84	84	118
TCTACCTAAATACACT	alt_5125_upstream	80	72	82	85	45	68	47	78	81	69
TAACCTTTATAATACT	alt_5125_upstream	14	12	26	25	12	14	7	19	6	17
TTGACGGTTACTTCTA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GTCATGACTGTCCGTT	alt_5125_upstream	13	20	19	21	16	27	11	17	14	19
GCCACGTACGCGAGGG	alt_5125_upstream	32	27	38	36	14	34	25	29	26	21
GTTGTGCATGTACCAG	alt_5125_upstream	31	30	63	48	41	34	42	45	41	25
TAGTCGTGTGTGAGTG	alt_5125_upstream	3	5	4	8	8	11	5	3	4	7
GACAACACTTAATCTC	alt_5125_upstream	87	49	105	104	67	90	73	78	71	96
CCACTTTTCGTTTTCA	alt_5125_upstream	78	56	91	98	59	78	53	85	77	78
AGGATGTCCACTTTGC	alt_5125_upstream	9	10	10	6	11	6	18	6	15	7
GTGTACTTACCCTACA	alt_5125_upstream	5	8	6	7	10	5	4	6	7	5
TTCCGGTCTGTTCCTT	alt_5125_upstream	30	22	32	17	24	27	23	25	32	25
ACTGTGTTCAACTCTA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GTCTACATCCGCCCGC	alt_5125_upstream	43	49	34	34	37	29	40	35	42	27
GAGCTAAGTTCCGTCA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
CCTACAGCATCCTTAT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GAACCACTGCTCCCTT	alt_5125_upstream	20	10	24	23	12	19	22	23	11	16
CCTGAAACGTGGAGGA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TCACCTATCTAACCAT	alt_5125_upstream	7	5	17	5	9	9	5	4	8	5
CATTCCACGGTGTCAG	alt_5125_upstream	6	6	15	9	5	5	7	6	9	10
ATGGTGTCGTCCTTGG	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACTAATTGGATC	alt_5125_upstream	78	68	112	110	58	81	67	96	66	91
ACGAGGTCTGTGTTGC	alt_5125_upstream	29	26	31	26	25	34	27	15	18	28
ATTTCGGGATAGCTTT	alt_5125_upstream	139	104	191	140	102	150	93	148	136	163
ATTTGTGCCCCGTTCT	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTTCCGGGCCGTT	alt_5125_upstream	28	20	23	14	14	20	13	28	15	20
TATTGTCTTTCTGCCT	alt_5125_upstream	86	48	127	89	55	74	52	74	61	72
ATGCATCTCTTTATGT	alt_5125_upstream	155	87	157	154	103	141	85	114	80	126
TAGTTTGCTTAGGTGA	alt_5125_upstream	10	4	16	16	15	8	6	9	8	5
AACCCCTAAAATTACG	alt_5125_upstream	78	59	91	82	70	79	63	69	69	61
TCCTTAATATAGTCAG	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GCGGAAGATAATCCGT	alt_5125_upstream	73	45	93	75	59	52	49	72	56	53
CACTGCTAAACTAGCC	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
CACGATTTTTTTACAA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
AGATTGTGTATCGCAT	alt_5125_upstream	108	84	138	119	77	118	84	116	85	105
ATGGCGTGTCAGTAGG	alt_5125_upstream	7	11	19	12	7	11	12	10	8	4
CTCTTTGTTTTATCAG	alt_5125_upstream	45	44	46	59	51	51	63	53	48	54
GCTAGGTATGCCTTAT	alt_5125_upstream	82	58	98	91	55	73	58	66	72	59
CTTTTACAGTCCTTTT	alt_5125_upstream	128	76	174	115	91	112	89	112	95	115
TGGTTAACCTGGACCG	alt_5125_upstream	7	14	4	2	23	4	20	9	25	5
GAGGTACATAGACCCG	alt_5125_upstream	72	39	88	58	39	50	47	60	51	56
TGATAGCATCATTCAA	alt_5125_upstream	46	51	90	64	59	71	49	60	55	47
GTCGAATGAAAACTTA	alt_5125_upstream	57	55	86	61	52	59	65	58	62	59
GTGTTGCCTAAAGTAT	alt_5125_upstream	25	18	30	20	12	28	22	19	23	11
TACCTTCACGGGCTGC	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
TAAAGCGCTGCGCAGA	alt_5125_upstream	139	106	188	166	124	149	125	138	121	131
TATCGTGGGGCAGATA	alt_5125_upstream	42	33	62	43	26	54	41	40	35	45
CTGGATATAGACGGTT	alt_5125_upstream	22	27	28	41	18	28	18	27	22	23
CCGCAAGTTTCGGTTA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
AGTGAAATCTGGGATA	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGCTGATTAGCAC	alt_5125_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTCCTCACGTGGA	ref_4037_fdr	15	11	11	14	12	16	17	13	12	12
GTATTGTCATCAACCT	ref_4037_fdr	14	23	28	29	26	30	21	17	27	19
AGTACGACTACCATCG	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTGAAACCTGTAT	ref_4037_fdr	0	2	1	0	3	4	1	2	3	2
TCCTTTGTTTGCCTCC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTACTCCCGCCCC	ref_4037_fdr	6	14	10	7	5	7	16	4	16	4
TTACAGAAGCCGCGTC	ref_4037_fdr	4	4	3	8	1	8	3	3	5	9
TGACCAAGTAACTACC	ref_4037_fdr	31	41	43	50	43	43	42	41	48	44
TATGCTGAAACCAACC	ref_4037_fdr	88	72	106	126	85	105	90	103	85	87
TTCGGGTTTTTTCACT	ref_4037_fdr	10	7	6	8	8	6	15	11	15	6
GTAGTCGCATTGTAAA	ref_4037_fdr	105	80	112	76	121	106	103	104	102	114
AATTTAGCTGGTCGAC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTCGCCTTCTTGT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTAGAACGTATCT	ref_4037_fdr	23	22	17	17	23	19	25	14	21	18
GCACATGGTTTCTTGC	ref_4037_fdr	45	40	51	41	29	32	30	27	43	42
TCGACTTAGCTACTCA	ref_4037_fdr	224	257	248	168	261	162	230	172	227	190
TGCTTCACCAATTTAT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTATTCTCGGGGC	ref_4037_fdr	27	22	19	22	13	21	16	14	24	22
GTGACTGCCCTAATGA	ref_4037_fdr	26	19	38	29	26	26	29	30	28	26
TCCCGTCATACATCTT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TCCACGTTACAGCAAT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTAACCATTACTA	ref_4037_fdr	21	19	20	17	17	20	9	12	24	15
ACTTTATCAAATCGTC	ref_4037_fdr	53	63	88	67	73	57	47	42	70	59
TTTTTGATTTACCCTT	ref_4037_fdr	4	5	3	3	2	3	7	5	6	5
CTGGTTGCGGCATTTG	ref_4037_fdr	51	50	69	54	63	50	57	44	49	54
CGCCGAATTTTTCCTC	ref_4037_fdr	2	10	3	5	4	5	11	2	7	4
TTTCATGGCTCTCGTT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCAAGAAAACAGAGTA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCGTGGGCATAGT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TGAGCATCTGTCCATC	ref_4037_fdr	1	14	2	0	4	1	2	1	3	3
CGGTTCACTAGGTGAC	ref_4037_fdr	4	5	11	4	6	2	9	7	4	7
CTACGGTACTATTCTA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTCTTCAGGCTGAATC	ref_4037_fdr	0	3	5	2	7	4	5	4	6	2
GGTCTAACACGCCAGA	ref_4037_fdr	45	39	62	41	38	50	34	45	37	35
AGTCCGGATCAGCTAG	ref_4037_fdr	11	23	23	19	10	18	9	11	16	16
CATCGTCTTTCGATAC	ref_4037_fdr	2	3	5	1	8	7	8	4	7	4
CAGTCCAAGGTCGATT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CGAACGAAGTTCGACG	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GTGTATCTCCGAATTT	ref_4037_fdr	22	18	36	25	26	37	24	34	24	25
TTCATTGAACACCCGT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCCCAAATTCTAAATG	ref_4037_fdr	8	17	17	21	13	13	21	18	15	12
TAGATAGTGCCACGCT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGCCTTGTGTAGC	ref_4037_fdr	38	45	45	24	40	29	42	35	38	32
TGCTTAAGGTCATCAA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCGACAATGGTTGTGT	ref_4037_fdr	24	42	48	29	24	25	17	26	17	27
CCGATCCGTGAAGGTA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GTTGTACTTTCCTTTA	ref_4037_fdr	9	12	15	13	8	13	7	15	16	14
CTGGAGAATGCGTACC	ref_4037_fdr	21	32	29	40	26	17	31	22	35	26
ATTATATGTTGGATAT	ref_4037_fdr	13	6	7	22	8	6	8	9	10	9
GATTGAGCTTCCGCGT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCATTTATTATCT	ref_4037_fdr	45	42	62	40	44	56	43	36	41	34
CTTTCGTACATAAAAC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
ATGCGTGGGAGGGTCC	ref_4037_fdr	13	6	12	9	5	9	9	11	10	3
GAAAGAATACCGAGAC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTCTACTTTACTGATC	ref_4037_fdr	33	36	24	22	28	20	25	26	25	26
CCCCGACTTAACAGTT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCCCAGTCCATAT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGCATCGGTATCT	ref_4037_fdr	8	3	10	8	4	14	12	5	7	8
GTGGTAGAGGGGAGTC	ref_4037_fdr	7	7	5	8	3	9	4	8	9	8
TATCAGTCCTACTGTT	ref_4037_fdr	1	0	1	0	2	1	2	1	1	1
AGCAAACACATGTCAC	ref_4037_fdr	7	4	11	8	6	5	7	6	2	9
TTGCTGGGCATTCTCA	ref_4037_fdr	34	45	55	49	48	54	51	38	56	47
TTTCCGCCACCGATCC	ref_4037_fdr	60	63	68	49	43	51	52	62	52	44
ACTCGAATGTTTTGGA	ref_4037_fdr	51	62	55	37	58	23	56	32	52	31
GCAGGAACAGGCACAA	ref_4037_fdr	18	25	25	16	23	13	16	15	21	11
CCTAGGATCCGGACCG	ref_4037_fdr	10	12	14	6	9	12	15	4	5	9
CTACATTTACGTCCGG	ref_4037_fdr	4	8	8	7	16	1	7	8	15	7
ATATAACGGTCACCAG	ref_4037_fdr	50	52	64	41	39	43	54	37	64	55
GCGGACTTAACGTTTA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TATCGTTTGTCGCAAC	ref_4037_fdr	50	56	63	54	59	49	50	48	59	47
GGATCTGACAGAATTG	ref_4037_fdr	13	12	10	6	14	6	12	15	8	8
GTTTTACGATGGGTTT	ref_4037_fdr	15	9	10	16	11	18	12	14	13	4
CCCATTAGGTTATACG	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GTCGGTTAGTGCATGT	ref_4037_fdr	5	2	15	7	12	7	11	9	2	3
GACGCTGACTATATCA	ref_4037_fdr	79	66	82	63	83	75	63	62	79	69
CGAATTCGTGAATAGT	ref_4037_fdr	19	18	23	18	31	14	31	15	16	9
TGTTCTATCCGGAATC	ref_4037_fdr	1	3	2	3	3	3	4	4	1	1
AGCGAATGAGCATGAT	ref_4037_fdr	21	17	26	38	14	23	34	23	26	28
CGGTCAACGGAATGAA	ref_4037_fdr	9	9	5	7	6	5	5	9	10	7
TGCCTGTCCCGATTTT	ref_4037_fdr	16	29	23	20	30	20	24	20	23	18
GAATCAGCTGGAGCTA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCGGATACATATGTTA	ref_4037_fdr	33	18	36	40	37	29	27	28	49	21
GTAGACCTTCTGTTTG	ref_4037_fdr	5	1	7	5	4	8	4	6	10	6
GGCTTGGTCTAATCAT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GCAATGTATGTCATCG	ref_4037_fdr	13	3	5	4	6	3	6	4	2	4
TATCTCGCAGCATATG	ref_4037_fdr	25	12	35	21	19	17	25	19	32	21
GATTTATTGCGGGATG	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TATTCCTATTCGGCAT	ref_4037_fdr	42	52	51	52	46	34	50	32	50	37
TGCATAAGGGCTTTGA	ref_4037_fdr	18	14	26	18	14	17	22	9	23	21
TATCGCTCGGTAACGC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTCCGAGTGTTAA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
AAGCAACAGGACACCA	ref_4037_fdr	5	5	7	9	3	3	5	13	14	8
ATAGTAGGGTTTTACC	ref_4037_fdr	21	37	31	23	49	20	26	22	35	22
AAACTTCGTTCTGGAC	ref_4037_fdr	28	19	28	37	35	29	32	27	28	32
TATGACATAGCAGCTG	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTAGCCACATGCC	ref_4037_fdr	9	8	5	7	8	9	12	7	14	7
GACAGCTACACTGGCT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCTCGTGAATGTA	ref_4037_fdr	29	35	16	27	38	27	21	26	30	34
GCGTCATTCAGGATAG	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CACGGTTCTCTTGTTA	ref_4037_fdr	104	85	106	104	105	91	106	99	113	89
GTTCTGATATATATAT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CATCGTCACGTATCGC	ref_4037_fdr	121	88	143	107	102	107	107	105	122	121
CCGGGTGCCGTGGTAA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
AGTAACCCCATTCTCG	ref_4037_fdr	39	32	41	33	42	27	44	24	39	18
ACTTACCCTCAAGTAA	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CCATATTCGGGCACGG	ref_4037_fdr	21	17	30	33	27	20	20	18	35	24
CTCTGTTCCGCGCTTT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCCTACTCATGGA	ref_4037_fdr	5	2	2	3	5	6	5	8	8	1
TGCATGAAGGAGAAAG	ref_4037_fdr	36	40	36	46	32	50	44	45	32	35
AAGTGTCTACCGTACG	ref_4037_fdr	6	11	10	11	4	7	11	7	11	3
GTCATTCCAGGTGTAC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGTAGAGTTCCAC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCAAGGCGTTATA	ref_4037_fdr	161	165	197	166	175	141	150	149	174	157
GTCGTCCTTACTTTTC	ref_4037_fdr	13	15	10	7	10	14	13	11	11	18
TAGCGTGTAATAAGCT	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
ATACTACTTCTGGTCC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CTTATAGTACGACCGG	ref_4037_fdr	46	31	56	42	51	49	55	48	37	32
AAGGCTCACCATTGTC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
CGCGGCTCGGAACCAG	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGTTTTACGTCAA	ref_4037_fdr	7	14	13	15	21	15	12	14	14	17
TGCGCTTTGGTTATCC	ref_4037_fdr	7	16	9	10	11	15	5	13	9	12
ACTGCTTTGTTTGTAT	ref_4037_fdr	58	64	68	58	53	69	51	72	65	72
ATGATCCCTCCGCACG	ref_4037_fdr	4	6	3	4	4	4	3	4	6	4
TCGTCCGTTCGCCTCT	ref_4037_fdr	139	108	171	116	121	125	132	116	132	133
GCGTCCCGCGAATTAG	ref_4037_fdr	19	29	28	18	17	17	27	24	20	23
CAGTCGGATGACTTTC	ref_4037_fdr	0	0	0	0	0	0	0	0	0	0
GTATGCCCGCGCTGGG	ref_4037_fdr	16	21	35	19	28	32	31	21	38	20
CCACCGCTTCGCCGTA	ref_4037_fdr	15	15	16	24	19	23	22	19	27	18
ATTTGGTCCGCGATCG	ref_4037_fdr	7	10	8	6	13	4	17	7	10	9
GCTGGGCAATAGTTAT	alt_4079_fdr	74	84	102	103	97	71	104	91	106	99
TAATGGTAATATATGA	alt_4079_fdr	57	49	69	61	43	56	42	44	78	40
ACTACAGGCCCCATGT	alt_4079_fdr	51	41	47	52	37	39	47	37	41	37
GTTGGCCTTTGTTTCG	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCTGTCTCATTTC	alt_4079_fdr	62	35	54	41	37	42	41	40	41	53
CACCTTGTTGTCATTG	alt_4079_fdr	12	20	19	16	25	15	34	17	19	15
TGCCACGCCAACGTTT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTTGGCTCAATTCTAG	alt_4079_fdr	58	51	64	62	57	68	61	58	62	59
GTTAAAATATTATCTA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CACGCCCACTTCTCGC	alt_4079_fdr	14	14	16	17	21	5	14	13	12	16
TTGTGTAAGAGGACCT	alt_4079_fdr	23	24	17	25	30	25	31	41	28	29
GCGCTTTTATTTACAT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GCACACAAACTACTAC	alt_4079_fdr	63	76	96	52	58	54	73	60	88	64
CATCCCGTCCTTGGGG	alt_4079_fdr	46	71	70	39	65	51	68	38	72	46
TTATTAGGGTTCTGAG	alt_4079_fdr	12	18	19	14	9	13	19	16	21	23
CCTGGTTCACTTCGAA	alt_4079_fdr	44	32	45	43	45	34	31	33	61	31
CCCCAGTTAATGTCTC	alt_4079_fdr	14	16	10	16	15	20	25	16	21	16
CAGCACTGTTTAGCCA	alt_4079_fdr	41	57	63	43	74	42	60	46	52	37
TAGAACCCGATTGTTA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTGTGAACCTCTT	alt_4079_fdr	39	27	27	37	34	36	30	30	32	21
CATGACGCTCTTTTTA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TAACTAATATGGTGGT	alt_4079_fdr	22	11	14	27	11	10	20	15	15	11
TAAAACGCTACCACGA	alt_4079_fdr	11	15	11	8	19	14	21	15	16	13
TGCGCCCCCACGCTGA	alt_4079_fdr	28	45	37	37	27	23	30	32	34	23
GGAACTGCCCATCTAG	alt_4079_fdr	234	230	274	225	230	230	232	220	250	222
TGTCCATTTTCTATTG	alt_4079_fdr	29	13	20	19	19	27	23	24	19	14
TCTCTTCTCAGCTTGG	alt_4079_fdr	137	132	134	126	108	111	134	119	147	91
CGCAATCGTGCCCGGG	alt_4079_fdr	10	6	8	10	7	6	5	10	7	4
TGCACCCTGATGTGCC	alt_4079_fdr	9	15	19	16	12	15	10	11	17	10
TATCGCGGCGCGGTGA	alt_4079_fdr	21	22	19	16	25	9	25	18	30	13
TTAATCTGATGCTGCT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCGCCCTTCCTTA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCGTAGCTACAGT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TCAAATCGTGTTATAT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGACGCCCAGTCG	alt_4079_fdr	14	17	20	20	12	16	29	18	15	16
ACTTCCCCCCATTTCA	alt_4079_fdr	10	12	12	12	10	11	8	12	19	8
GAGGTCCGCATCAATA	alt_4079_fdr	75	57	72	58	81	66	75	75	78	82
TCCATTCGGAGTCATA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CATTCTTTCACCTTAA	alt_4079_fdr	14	15	18	19	16	7	21	11	13	9
TTTGGGCGTTTGGGGC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GTGAATGTGCTCAGGG	alt_4079_fdr	27	29	47	29	43	23	30	24	31	21
ATTGCGGGGCCTTATG	alt_4079_fdr	41	41	65	59	45	49	37	50	41	42
AGGGCTTCCATTCTAG	alt_4079_fdr	95	88	99	81	89	74	80	81	115	81
GGTAGAAGACATTTCA	alt_4079_fdr	3	2	4	3	2	6	3	8	5	9
GCCCTCTCCGATGGAT	alt_4079_fdr	1	0	0	1	1	1	0	0	0	1
TGTTCTTGTCTGCAAT	alt_4079_fdr	112	108	115	88	124	108	139	72	122	88
GACGGTGATACTTGAC	alt_4079_fdr	40	38	67	42	37	51	30	33	52	35
TCTTAATGCGTTTCCC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CCTGATTTCCAAAGTT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCCTCATGGACTT	alt_4079_fdr	63	46	59	55	73	51	53	55	72	41
TAGAAAGTATGTTGGT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TGATGTTCCTTGCATG	alt_4079_fdr	19	10	5	13	19	8	16	12	23	8
ATTCCACTGGGGTCTT	alt_4079_fdr	65	62	67	70	64	78	88	51	64	42
GCAACTTAAGTCCATT	alt_4079_fdr	31	19	34	28	29	18	17	24	26	23
GTTTTTACGTACTCAG	alt_4079_fdr	9	10	23	11	5	13	11	12	10	17
CGAAGGAATCAGTGAC	alt_4079_fdr	2	4	1	1	0	4	1	1	3	1
TTGGGTGTATAGTTGT	alt_4079_fdr	25	35	36	20	44	24	30	21	38	25
GAATTTCGCCGTCTTA	alt_4079_fdr	29	12	15	25	23	15	19	19	21	20
ACATTTTATGGGACTC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CAAATCGATGCTGGTC	alt_4079_fdr	19	18	36	22	18	16	29	18	21	13
CCACAGGCCTTTGACC	alt_4079_fdr	118	105	142	128	113	92	117	115	112	107
CTTGCAATTTGGCAAT	alt_4079_fdr	6	12	19	16	13	14	17	15	19	10
ACATCTTATTTTCAGC	alt_4079_fdr	35	31	57	56	40	47	45	38	52	44
CCATTGGCAATAGCAC	alt_4079_fdr	25	17	16	12	23	17	22	9	25	18
AATGCTCCCCCGGTTT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GTTGACCGCGGACTAC	alt_4079_fdr	23	32	50	31	48	24	34	27	42	21
ACTCATTTCGTTCTCG	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTGGAATTCCTCC	alt_4079_fdr	75	78	76	69	78	73	64	80	63	57
TGCGATACCCTTTTTG	alt_4079_fdr	118	148	144	108	159	133	135	118	149	108
ATCACGTTCGCTCAGT	alt_4079_fdr	21	22	28	15	14	21	26	10	30	19
CCTACAGTGGGCCGCG	alt_4079_fdr	7	13	16	14	8	9	13	6	12	8
TGTCGACCCGTATTCA	alt_4079_fdr	15	12	27	20	25	22	24	16	27	16
AGATGGGTTCGAGGTA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTATACAAGACC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTATAGGTTCTTCTTG	alt_4079_fdr	37	50	51	37	33	45	29	38	38	34
AGCTACGTGCAATTAT	alt_4079_fdr	45	50	63	57	49	37	71	43	70	44
GTATGTCTATTGAGTT	alt_4079_fdr	48	67	59	44	76	45	71	54	76	24
CAATGGCCCTCTCAAT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TCACCCTCATACTTGC	alt_4079_fdr	4	15	14	16	22	21	16	2	18	11
GGGCTTTGACGAATAG	alt_4079_fdr	78	76	94	81	78	71	73	89	69	69
ATCTTTCAATGCCGGC	alt_4079_fdr	37	12	37	33	19	25	17	35	33	27
CTCGATGGTGGGTCGG	alt_4079_fdr	16	5	22	7	8	6	13	5	13	4
CGTGTCCAGGACTTTG	alt_4079_fdr	10	6	11	8	11	5	11	8	6	13
ATCCGGGGGTCTATCC	alt_4079_fdr	15	37	9	18	38	9	23	7	39	12
TTAGTGGATAGCGACG	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTCCAGGAGTTTAAGG	alt_4079_fdr	5	3	1	3	6	7	6	3	3	0
GTTTTAGTCAGGTGTA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCCCGCACGTTA	alt_4079_fdr	14	34	19	22	27	23	37	8	34	14
TACGCCTTAACGTACC	alt_4079_fdr	22	9	15	16	7	13	10	10	12	11
CGATCCTTGGAGACGA	alt_4079_fdr	21	17	19	12	15	16	14	16	16	13
GTTTCTGCAAAGAATG	alt_4079_fdr	15	2	6	12	8	8	15	8	12	5
TGCGATACCCTTTTGG	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGTTTTTGATGAA	alt_4079_fdr	26	24	32	7	24	12	18	11	25	30
GATACCCATTGCTAAC	alt_4079_fdr	3	0	6	5	8	2	1	1	4	0
TCATCTGGCAGACCAA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCGTTACGGTCCA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGCTGTTTGAGTC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTTTTCTATCACA	alt_4079_fdr	19	10	15	11	9	16	9	7	11	11
CCTAACGCCCTCAACT	alt_4079_fdr	26	30	26	23	31	11	30	27	24	13
CCATTCATGCTCACAA	alt_4079_fdr	47	57	41	39	55	36	47	40	58	38
TATTGGGTGCAATGTG	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
AATATATCTTTGCAAA	alt_4079_fdr	3	2	4	5	1	2	9	7	4	5
GTTGGGGCTGAAGCGG	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
TTAATCTTGCCTACAA	alt_4079_fdr	295	309	291	264	305	239	332	241	326	238
CTGAGCCATCCAGTTA	alt_4079_fdr	33	41	18	21	47	23	49	27	55	14
CTAAGCTTAGCAAATC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CATATCTCCTACCTTA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCTGATAGAGGGC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
CGTCCCCGCATGCTTT	alt_4079_fdr	2	4	5	8	3	4	6	2	6	5
AGCCATGTAAAGATGA	alt_4079_fdr	143	152	184	156	131	135	141	140	167	125
GATAACTGGCCCGAGG	alt_4079_fdr	11	15	25	16	25	11	11	12	11	14
CCGACAGCTAACGGGG	alt_4079_fdr	47	32	38	22	37	22	52	42	39	33
TCAGGCACGGCAGCCA	alt_4079_fdr	44	43	73	61	50	41	53	39	60	55
GCGCTGACAGGTCACA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GGTGTTATTTACTGCC	alt_4079_fdr	91	92	124	119	99	109	91	90	115	72
TCTTACATCATAGTAT	alt_4079_fdr	16	32	38	28	20	28	29	18	31	14
ATTACTCCCCAGGTAT	alt_4079_fdr	4	18	6	2	9	5	22	5	19	1
TCTATTGTTTTCTAAC	alt_4079_fdr	39	44	43	30	42	41	50	41	60	32
TCTGGCTTCAAAGCTC	alt_4079_fdr	83	79	130	94	96	98	97	100	125	109
TACATCCTGGACAGAG	alt_4079_fdr	50	65	70	64	43	54	54	60	62	53
AGCCTGTTTGCAACGC	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTTGGTTACCCAT	alt_4079_fdr	39	44	41	25	48	38	41	30	32	31
GGTTACGCTTGACGTG	alt_4079_fdr	17	33	34	21	22	15	33	22	20	21
GTAAGGTTGAGCAGTT	alt_4079_fdr	16	27	14	10	8	10	21	10	8	6
TCCTGAAGCGGTACAG	alt_4079_fdr	11	14	10	7	11	7	10	6	11	8
AGTTTACCCTGGGACA	alt_4079_fdr	74	46	61	41	51	53	52	60	56	56
GCCTCCGTTCCGAACA	alt_4079_fdr	162	173	207	177	195	152	152	180	208	154
TGTATCTGAATTCTAT	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCTGCATCCCCT	alt_4079_fdr	17	44	28	28	45	14	29	21	31	17
TTCACACAGTCTAGAA	alt_4079_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGATGTTCCATAT	alt_4079_fdr	39	54	59	47	52	42	55	47	54	40
GTGGTCCATTCATTTT	alt_4079_fdr	5	6	7	6	2	2	4	5	2	3
TTTCGTCCGTCGCTGA	alt_4079_fdr	17	20	32	21	33	23	40	26	37	21
GTGAGAGCTTTCTTTG	alt_4079_fdr	40	39	56	49	51	35	45	42	43	45
GGCCAACTTACCGGGC	alt_4079_fdr	10	10	10	10	19	7	9	10	8	6
CCGATGGCATCAGCCG	alt_4079_fdr	19	15	22	21	27	15	25	18	15	19
GTCCTGACTTGTTGAA	alt_4079_fdr	38	36	47	41	48	36	32	43	34	31
TGGATGCGCTACCTTG	alt_4079_fdr	25	29	34	38	35	35	41	27	37	30
ACTAGAGACCTCATTC	ref_5894_new	7	24	13	11	30	10	21	17	27	17
CGGTGCCACGTGGGGA	ref_5894_new	9	14	6	6	21	12	20	4	24	10
CCGCAGTGTTGATGGC	ref_5894_new	43	51	59	42	53	50	44	26	60	30
CGCATAAGTGGGATTG	ref_5894_new	0	0	0	0	0	0	0	0	0	0
TATTGTAACGTATGGT	ref_5894_new	0	0	0	0	0	0	0	0	0	0
ACTTAGTGAGCTTTTC	ref_5894_new	10	9	14	13	12	6	18	10	11	11
CCAAAATGCCTGACAA	ref_5894_new	0	0	0	0	0	0	0	0	0	0
CGGTGCTTGAACCTAA	ref_5894_new	0	0	0	0	0	0	0	0	0	0
CGTGGTAACCCTTACT	ref_5894_new	0	2	0	2	0	0	7	0	3	1
TATTACCTTATCCGCA	ref_5894_new	4	5	10	4	6	6	11	5	7	1
CTTTTCTGTTTCGATA	ref_5894_new	41	74	53	43	72	40	72	32	63	26
GCTACGCTTACGTCGC	ref_5894_new	14	8	16	15	23	10	11	13	21	9
CTCAAAAGAATACTCT	ref_5894_new	14	22	11	17	17	24	27	10	20	8
ATTGTACAAGAATTAG	ref_5894_new	0	0	0	0	0	0	0	0	0	0
AAGCCGCTAGATAGCA	ref_5894_new	7	20	11	15	23	4	25	11	20	11
TTCTAACGGAAAACAC	ref_5894_new	17	19	21	20	26	17	17	17	25	24
GTAGTTTATTTTAGTG	ref_5894_new	8	34	23	12	26	24	27	17	29	20
GTATTTCTATTATACT	ref_5894_new	3	10	9	4	6	11	8	7	21	9
ACCCCATCTCCGGCGT	ref_5894_new	29	60	45	28	56	34	61	31	62	29
GGTCATTACGTTTGCC	ref_5894_new	53	54	70	62	77	60	81	45	62	47
GGTACAGTTACTGAAG	ref_5894_new	12	10	5	14	8	14	14	5	11	11
GGGTCTTTTTCTAAGC	ref_5894_new	12	13	13	11	23	7	13	13	14	8
TACCCGCGGCAAGTGT	ref_5894_new	5	11	7	7	13	1	9	2	10	6
ATCTGAGCTATCACTA	ref_5894_new	13	24	20	17	22	20	30	16	26	13
AATCTCGTCCATAAAC	ref_5894_new	50	67	41	45	79	51	92	49	85	43
CTGCACTTAAATTTGT	ref_5894_new	0	0	0	0	0	0	0	0	0	0
GATTTTACAGCGTCAA	ref_5894_new	12	13	12	10	12	4	20	9	25	11
GATTTTTTGTCTCCAC	ref_5894_new	36	63	49	41	47	32	57	37	52	37
CCAACTTTCCTCCTGG	ref_5894_new	8	11	13	8	18	4	28	8	22	4
TTTTCGGCTTTTTCTC	ref_5894_new	18	26	15	20	18	23	11	9	37	12
TAGGCGGTGTTACAGG	ref_5894_new	7	11	4	0	10	6	6	4	11	6
GCGTTTTCACGTGTGT	ref_5894_new	14	11	9	6	10	8	17	8	9	4
CCTTATTAGTGGACCG	ref_5894_new	10	48	15	23	31	13	56	10	46	9
GCTACTTCCTGAAGTC	ref_5894_new	93	141	116	111	174	96	170	107	142	103
CGCGTTAATCGTTGCC	ref_5894_new	38	48	47	42	53	32	63	27	67	35
CGGGTAACATGGCGTC	ref_5894_new	10	14	9	9	8	16	17	10	10	13
ATGCACAGACTTGGGT	ref_5894_new	13	52	35	25	44	20	44	18	42	24
ATCTTAAGGCACTGCC	ref_5894_new	0	0	0	0	0	0	0	0	0	0
AGTGCGTTACAAATCG	ref_5894_new	72	118	95	61	111	84	147	54	136	64
TGCCACACTGCGTGAC	ref_5894_new	4	20	5	6	19	3	13	9	10	9
TACGGCGTTGTGTCCG	ref_5894_new	13	20	12	11	13	4	13	10	11	7
TAGTGCACTCTTCGCT	ref_5894_new	59	115	61	52	133	51	111	57	136	40
TAATACGTGACGTTTC	ref_5894_new	48	41	35	40	33	25	30	20	25	24
GGTGCATGACTGTGGC	ref_5894_new	38	71	63	39	80	53	83	43	79	47
TTCCAATACATAGGTG	ref_5894_new	3	4	5	3	6	4	13	4	5	4
CTCTATACTGTGTACA	ref_5894_new	15	36	32	18	42	14	38	21	55	23
CAACTCGGTTCTGAAT	ref_5894_new	0	0	0	0	0	0	0	0	0	0
CCAAGTTATTCCGCGC	ref_5894_new	6	46	4	16	27	8	39	17	45	10
AGGCGTCGGTCACTTG	ref_5894_new	14	14	6	10	27	7	21	14	20	9
GCATGTGCTGACTTGT	ref_5894_new	16	23	9	6	20	6	18	9	20	13
TCTTTGGTGGCATTAT	ref_5894_new	6	17	33	19	18	11	18	22	28	9
TCGTTGATGGTTTGGT	alt_5163_reverse	3	8	6	4	4	8	7	2	3	9
TTCTCAGGACTGCCAT	alt_5163_reverse	78	80	75	57	86	59	82	65	92	59
GACATACGCATGCTAT	alt_5163_reverse	16	16	21	16	29	28	28	16	29	18
AACCTCGTTAAATAGC	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
TATCGTTCGCGGATGT	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
AGTATAGGCTACAAGA	alt_5163_reverse	58	70	65	67	68	64	60	47	62	55
TAGGTTGATATAAAAG	alt_5163_reverse	39	48	44	39	43	25	31	25	41	28
CTCGTTTCTGGCTTAG	alt_5163_reverse	10	20	9	11	12	8	19	8	12	10
CTTGTGATAGTTTTCG	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGTGTTACTTTAG	alt_5163_reverse	24	28	16	8	25	6	24	9	21	10
ACCGATATATAACAAC	alt_5163_reverse	3	5	4	5	3	3	0	1	2	1
TAGATATCAGCTGCAT	alt_5163_reverse	128	129	141	105	136	101	127	115	157	105
TGTCTATAGCATACAA	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTGGGAAAGGATA	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
CAGCCCTTGTGACCCC	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
TTATAAGAACTCTGTT	alt_5163_reverse	10	12	8	7	11	11	8	8	12	9
GTGGATATTTCTTACG	alt_5163_reverse	54	61	78	43	72	54	76	39	74	40
CAAAAGAATGTGTGCG	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
ACAATGTGATTGACTT	alt_5163_reverse	11	20	17	12	21	11	20	9	13	9
GAGAGTGGTTGCGTCC	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
ACGGCGAATGAACGGT	alt_5163_reverse	24	10	33	24	23	18	19	24	21	15
TGCTGTCGTGTGAACG	alt_5163_reverse	5	3	3	2	6	1	4	1	5	2
TCACAGGCATCACCGC	alt_5163_reverse	6	7	13	11	8	10	9	11	14	11
AGGCCTACCGTTACAG	alt_5163_reverse	9	21	9	11	18	4	15	6	31	11
ATTTTGATTGGTTGTT	alt_5163_reverse	5	18	14	10	15	13	26	12	15	16
GGTCTCCCGGAACCCT	alt_5163_reverse	0	1	2	1	1	0	0	1	0	0
ATACCCCCAGTACTTT	alt_5163_reverse	0	5	0	1	3	1	7	0	5	3
TACAACATCGTTCCTC	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
CTCGACTGTGTATTAC	alt_5163_reverse	23	13	30	16	12	14	28	16	24	13
GGATTAGTACCTGCAA	alt_5163_reverse	61	73	62	49	78	54	81	60	74	40
ACGAAAAAAGGTTTGA	alt_5163_reverse	10	2	10	12	12	6	13	15	14	11
GATGCCCATCCAGGCC	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCACCCTCGTGCA	alt_5163_reverse	32	46	47	27	59	42	47	41	37	42
TTTCCCAGCGTTCCAT	alt_5163_reverse	33	26	25	17	26	8	18	12	25	18
GAGTGTTAGTGTTCTA	alt_5163_reverse	65	79	71	62	91	49	70	33	69	43
ATTTCATTAGGTGTCC	alt_5163_reverse	21	40	29	28	44	18	35	20	36	23
TTAATGTCATTCGGCT	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
CCTAGTTCGTGCCTTC	alt_5163_reverse	13	59	21	23	90	20	73	20	95	24
CCCCCCTATTTAGTGT	alt_5163_reverse	24	41	33	24	30	32	54	14	62	16
CTGCCGCTACGTGGCG	alt_5163_reverse	5	18	7	11	14	11	12	7	17	9
CTAGGGGGTGTACAGA	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGTGACTCACCTG	alt_5163_reverse	3	32	12	6	24	5	33	6	37	6
CGGTTATAAGCGTGGT	alt_5163_reverse	9	14	12	10	21	9	18	9	16	10
TTGGCCTGCTACAGTA	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
GCGAAGACCCCGGATC	alt_5163_reverse	6	3	9	8	7	1	3	7	6	3
TTCCACGCACCCGGTC	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
GGGGCGGGGCACATTC	alt_5163_reverse	1	5	6	8	12	5	5	6	6	5
GTTTCAGCGAGTCCCA	alt_5163_reverse	33	16	27	17	29	17	33	23	23	22
TTTAGTTGCTCAATGA	alt_5163_reverse	5	3	2	2	7	5	3	2	4	4
CGTGGCTTTCTAATTA	alt_5163_reverse	23	30	32	33	36	23	28	21	35	20
TTTCTCGGTCCCCCAC	alt_5163_reverse	0	0	0	0	0	0	0	0	0	0
ATCCAACGCAAGTATT	alt_5163_reverse	13	10	21	12	22	12	22	5	15	13
TTGGCCTATCCCTTCT	alt_5163_reverse	12	18	8	13	22	11	18	11	29	5
ATAACCACGCCTCAAC	alt_4926_reverse	2	3	5	5	7	3	11	0	10	4
CAAACTGCTCTCAGGG	alt_4926_reverse	45	56	34	48	52	35	58	29	58	20
CTTTCACAACGTTGGC	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
ATGTTCTTTTTGTCTG	alt_4926_reverse	8	9	3	6	7	1	10	8	7	1
GTTGATGCTTTGTAGA	alt_4926_reverse	39	81	59	38	56	45	89	40	80	49
GAAAAGCCTCCTGCCT	alt_4926_reverse	8	6	4	4	13	2	4	3	7	3
CGTTAGCCCTATCCGG	alt_4926_reverse	20	37	30	19	32	19	28	23	35	27
AGGTTCCGGCCTCCTT	alt_4926_reverse	24	22	20	17	23	18	28	12	27	22
GAATTTGCGCCATCTC	alt_4926_reverse	31	38	45	31	39	20	38	26	42	21
TTGGAGTAAGCACGAG	alt_4926_reverse	28	64	32	38	37	28	64	16	45	20
CGGTCTGATATAACTA	alt_4926_reverse	27	96	38	20	97	23	97	31	100	30
TGATATAGATACCCAG	alt_4926_reverse	15	41	22	28	31	36	31	25	30	15
GGTATTGAAACGCGGG	alt_4926_reverse	41	40	29	39	56	36	63	43	70	31
GGAATCCTAGTATTGC	alt_4926_reverse	27	92	30	27	68	37	59	21	108	22
CCACAGTTTACGCGGG	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGGAAGTGCCATG	alt_4926_reverse	9	18	7	16	24	8	27	8	16	11
CGTGATGGAATCGACG	alt_4926_reverse	9	14	14	9	8	9	21	8	15	8
TCTTACGGGTTAGGGC	alt_4926_reverse	204	313	216	178	306	180	340	146	362	170
TGTCGTAAATGTTGAG	alt_4926_reverse	58	89	60	47	79	36	79	37	99	49
CTTCCGCCGAGATACG	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGCCTCTATCATG	alt_4926_reverse	45	101	86	55	103	62	135	58	140	63
TACTGCGACCCAGGTT	alt_4926_reverse	89	136	96	80	160	86	149	76	167	86
TGTACGACCTTACGCA	alt_4926_reverse	3	15	7	11	11	5	10	2	12	4
TTCTGCACGTTCAAGG	alt_4926_reverse	80	134	96	93	127	78	132	86	141	103
CTAGAAATGTCTTTGA	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTATACCCGAGTT	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
TCAGGCCAACATCACA	alt_4926_reverse	20	36	25	24	23	23	30	14	31	24
AATGGCGTTTATCCAA	alt_4926_reverse	67	83	91	53	78	59	76	52	94	52
GCAAAGTCAATAAACA	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
CACGGTGGGGAGTCCA	alt_4926_reverse	37	61	43	36	40	27	53	26	50	19
GTTATTTATCTTCCGT	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
GAACTAATTAGGGCCC	alt_4926_reverse	100	177	127	107	184	100	185	109	204	95
ATGTGAATTTGCCTAC	alt_4926_reverse	16	24	14	15	24	10	30	13	25	19
GTGTCCCGTCTGATCC	alt_4926_reverse	73	110	77	67	113	49	107	63	120	60
TCATGGCTCGATTCTA	alt_4926_reverse	184	298	240	177	293	193	313	191	305	192
GTGTTCCAGGACTCGA	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
AGGAGACTTTTTCTGA	alt_4926_reverse	22	27	33	29	23	21	36	16	41	24
CATGGCATCTTGATAC	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
TGAGCGTTTCATCTGG	alt_4926_reverse	26	45	27	20	45	21	52	22	46	33
TCAGACTCGGTAATTC	alt_4926_reverse	124	244	174	128	243	132	243	141	245	123
TTTCCTTACACGACAC	alt_4926_reverse	22	33	24	17	27	14	34	15	27	10
GCCGAATGTTCTACCT	alt_4926_reverse	1	11	4	0	3	3	10	4	9	3
AGCTTTACTAATAGGT	alt_4926_reverse	11	21	7	8	18	4	13	6	13	7
GTGTCGCAGTGCCAGT	alt_4926_reverse	49	103	55	45	87	43	93	40	120	42
TGGTGGTCATGCATAT	alt_4926_reverse	30	55	35	24	38	31	43	22	44	19
CGCAGTCTATATTGTG	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTTTGATCGTGTG	alt_4926_reverse	22	57	26	11	51	16	45	21	44	15
ATTCTTAAGTGTCCTC	alt_4926_reverse	7	7	9	9	8	4	10	7	7	8
GCCATTGGCGAATTTA	alt_4926_reverse	21	39	32	19	51	23	45	16	48	12
GCTTGGAGCCGGTTAG	alt_4926_reverse	46	87	69	63	76	51	75	61	78	36
CTTCTCCTCGGCTTTT	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
GGCTGGCCATCCTTGT	alt_4926_reverse	2	5	3	0	4	1	4	2	2	2
TGATGCTTAGACTGTG	alt_4926_reverse	5	16	7	8	30	11	10	6	23	4
ATCAAGCAGAGCTTGT	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
ATATTGCTTCAAGCGG	alt_4926_reverse	36	78	29	23	58	31	56	21	59	31
CCGACATCTAGAACAG	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGTATCGGTGTTT	alt_4926_reverse	8	34	14	18	32	18	27	15	24	18
TACTGTTGGCCTGGTA	alt_4926_reverse	30	38	55	18	27	21	64	26	65	21
GGCCCGTATGCGCCCT	alt_4926_reverse	27	42	38	19	57	26	53	25	46	23
GCATTGTCTATCTGCT	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCAGTCGTGGTAT	alt_4926_reverse	29	62	34	29	49	27	53	30	55	29
TTAGCTCTTGGGACTA	alt_4926_reverse	32	49	30	34	63	30	60	49	60	25
TGCTTAGATGCGCTGT	alt_4926_reverse	29	41	29	24	42	28	48	19	46	16
CCGGCCAAAAAAAATT	alt_4926_reverse	2	14	1	6	12	1	12	3	9	2
TGGTCGCTGCGAGGGT	alt_4926_reverse	5	11	6	6	17	9	11	4	16	11
TCACCCGAGAACCAGC	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTGCAGGTCACCG	alt_4926_reverse	9	12	8	10	13	7	14	11	14	8
TAACCTGGGCCCGCCT	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
GCCATACCACCACTAC	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
CTCATATTGATGGGGA	alt_4926_reverse	19	44	33	25	38	24	32	23	37	19
TACTTGTATCGGTTCA	alt_4926_reverse	1	4	0	3	1	1	3	3	3	1
TAAACAAGTCGTGTTT	alt_4926_reverse	24	47	43	37	41	18	36	29	28	32
TTGGCGTCGACTCAAC	alt_4926_reverse	0	0	0	0	0	0	0	0	0	0
TATGGGTTATGGGTGT	alt_4926_reverse	43	66	50	43	76	58	95	45	94	49
TTCACGTCTCTTCGGG	alt_4926_reverse	38	70	41	50	75	37	68	40	74	33
GCGCTTGACGTTTTTT	alt_4926_reverse	0	1	3	1	3	3	1	1	0	1
CTTGATGCTCATCTAT	alt_4926_reverse	155	208	142	124	206	122	221	136	202	121
AGGGCCCGGGCTTATT	alt_4926_reverse	37	51	48	37	77	33	70	43	96	41
CGTTCTACGGTACAAT	ref_4322_missing	0	2	4	6	7	4	8	1	7	5
CTTCGGGCTGCGAGCC	ref_4322_missing	13	16	5	7	25	11	22	6	30	11
AATGACTCTGGGGAAA	ref_4322_missing	145	267	185	134	265	132	245	136	303	146
CGGGTGATGCTAGGCC	ref_4322_missing	6	28	11	0	21	2	17	7	19	4
TTTCGCTTGTTAGCCA	ref_4322_missing	2	9	11	5	18	5	10	3	22	5
TAACGTGCTCAAATGT	ref_4322_missing	11	21	10	20	26	10	21	12	25	7
TAGTTCTCCCCCGCGT	ref_4322_missing	19	38	18	19	40	11	28	10	41	11
ATATTGATTGACGACC	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTGCGAAGGGAA	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
AACGACCGGAGTCACC	ref_4322_missing	16	45	26	22	49	18	45	26	42	22
CCCGTTACCATAGCTT	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
AACCCTCGCCTATAGC	ref_4322_missing	14	35	13	16	34	12	33	8	30	4
CACGGGCGTCAGACAC	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
CTATACTTGCATACGG	ref_4322_missing	29	51	24	20	65	23	50	24	52	25
CTTATATGGTTGTTGT	ref_4322_missing	58	116	57	47	110	55	112	48	132	65
ACGCTCACCTCGGCGT	ref_4322_missing	17	39	27	19	41	20	50	14	51	12
TTGGTGCTCTGCAGTT	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
GGGCATTCCGTGCAGA	ref_4322_missing	4	5	7	7	10	2	4	6	9	2
CCCGTCTAAATTGCTC	ref_4322_missing	22	43	19	28	49	15	60	22	42	22
CAATACACGGCCGTTT	ref_4322_missing	6	21	17	11	12	6	21	14	24	7
CTTTGACAGATCTATG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
CTAGCTTCGGGGTATG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
CAGACATCTAGAACAG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
ACAAAATTATTGGTAT	ref_4322_missing	17	22	18	9	22	9	19	13	13	7
AAAACTATTGTCATGA	ref_4322_missing	17	37	28	23	31	21	31	15	31	15
GTTCTTTTTACCCTGT	ref_4322_missing	19	33	23	18	35	18	25	28	34	20
AACGTATCTACACGAG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
TCGTGCGCTGAGGTGG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
GGTTACCTATACCCAA	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
AGGATATGAGTGTACC	ref_4322_missing	18	21	8	9	15	4	29	11	22	9
TAATGCCCGCACGCCA	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
CTAAGAAGGTTAAACT	ref_4322_missing	73	129	101	76	175	82	154	57	153	78
GTGCGCTTAGCGGCCG	ref_4322_missing	95	191	148	114	229	107	217	82	220	111
CGAGCAAGAATAGTGG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
AGTCCCGCCCCCAATT	ref_4322_missing	8	13	9	8	14	6	14	14	18	9
GCCGGCATGATTTGTG	ref_4322_missing	63	153	67	47	123	59	150	56	138	56
TAATCCTTAGATCTCT	ref_4322_missing	9	14	25	12	19	7	15	9	23	5
TACCGTGCTGAAACAA	ref_4322_missing	38	65	56	39	84	36	73	36	74	35
AGTCCGCCTCTGTACC	ref_4322_missing	43	59	39	27	76	43	76	27	75	31
ACGAAAGCTCCTTCCG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
TTTTGCGTAGAAAAGG	ref_4322_missing	8	10	13	7	20	5	17	3	9	11
CCTGGCGCCCCATTTG	ref_4322_missing	22	26	19	26	42	11	33	22	36	25
GTTTAAATAGTTCACA	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
TTTACGAGCAGCGTAT	ref_4322_missing	11	20	13	12	23	15	20	10	25	12
AACCGGAACGACCCAG	ref_4322_missing	0	0	0	0	0	0	0	0	0	0
TAGGAGTAACAGATGG	alt_5713_new	76	81	85	60	60	75	65	76	67	56
ATAATCGGCATAAGGA	alt_5713_new	4	6	4	6	5	9	7	7	9	4
ATATGGTAGGTTCACC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
TCGGCAGACGGGATAT	alt_5713_new	12	9	8	17	12	5	9	8	18	13
TCCTCCAAACCGTGAG	alt_5713_new	31	48	53	48	48	32	55	26	45	31
TTTCAGGAACGCTTGC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
GATCTTCCGTGGCGTG	alt_5713_new	0	0	0	0	0	0	0	0	0	0
AAAGACGGTTTTATAC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
TTGAGACTTCTCATCT	alt_5713_new	5	10	17	13	6	12	5	4	9	12
CCTTGCGTAGACATAT	alt_5713_new	3	1	5	5	2	1	2	2	4	2
TGTAAACTTTCCATGC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
GTTATTTTCCCTATTT	alt_5713_new	12	7	11	10	5	12	9	9	9	7
GAATACATTACTTAAT	alt_5713_new	46	45	64	53	47	59	64	43	44	46
GGTCTGCAAGGAGTGT	alt_5713_new	0	0	0	0	0	0	0	0	0	0
TTCACCTCCGTCTTCC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
CCATGCCTGTGAATCA	alt_5713_new	31	44	37	25	39	40	68	29	60	24
CATTGCGGTGAAGCCC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
TGGATTCGCTCTCAGG	alt_5713_new	0	0	0	0	0	0	0	0	0	0
CACTTGAAAATGCCTT	alt_5713_new	237	294	293	237	295	238	272	235	302	222
AGGCATTGTACATTCA	alt_5713_new	20	33	21	22	24	22	25	24	23	19
TATCATTTAGGTTACT	alt_5713_new	0	0	0	0	0	0	0	0	0	0
GGCAGGGTGTATGCGT	alt_5713_new	100	122	149	134	123	105	111	117	129	98
GCCTCCACCGCTTCGC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
CGTTACTTGCCACAAG	alt_5713_new	25	34	29	32	36	30	32	31	49	21
CGTCGTCATGGGCATG	alt_5713_new	0	0	0	0	0	0	0	0	0	0
GCCTCTTCGGTATTTG	alt_5713_new	10	4	6	3	3	1	8	2	3	9
GCACCAGCGGGGTACC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
AATTTGCATGGGCTGT	alt_5713_new	0	0	0	0	0	0	0	0	0	0
CTGTGTGTTCCTATCC	alt_5713_new	35	34	56	49	28	31	52	26	40	31
GGATCTCAATTGACGT	alt_5713_new	10	19	26	24	18	16	21	26	24	24
ACGAGGAACACTGTGG	alt_5713_new	12	22	21	25	24	11	17	16	26	23
GTCGCCTGAGAATGAA	alt_5713_new	0	0	0	0	0	0	0	0	0	0
CTCAAACCGATGTTAG	alt_5713_new	0	0	0	0	0	0	0	0	0	0
AACCCCCAAACTCTAG	alt_5713_new	26	22	33	33	31	21	27	32	25	25
CACCAAGTCATCAGGT	alt_5713_new	16	13	18	16	8	13	18	16	17	7
ATATTTTTTAGTAATC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
ATTTTCGGTCTTCGCG	alt_5713_new	55	54	79	59	72	37	60	48	67	79
CACGTGTACCTATGCT	alt_5713_new	26	22	28	20	34	24	33	22	26	13
GACGATGCGGTTTATG	alt_5713_new	150	119	182	171	139	136	147	125	154	109
GTCCGCCAATGGCTGT	alt_5713_new	85	55	77	74	76	63	87	64	78	77
TTGTTGGCTTGCGAGC	alt_5713_new	53	42	43	36	44	47	48	30	52	37
ATAGCCTGGTTGCATC	alt_5713_new	96	75	95	105	90	94	110	66	112	81
GGTGATACCTCGCTGC	alt_5713_new	0	0	0	0	0	0	0	0	0	0
GTCGTAGGCATAGACC	alt_5713_new	9	2	10	9	5	3	12	5	9	11
GTCCCTCCGGCGTTGA	alt_5713_new	50	52	66	49	61	50	54	55	56	45
GTGACATTCTGCATAC	alt_5713_new	18	16	19	15	23	13	17	16	13	11
GTGCGGGTGCATCCCG	alt_5713_new	10	9	9	15	20	16	13	17	13	13
CCTAACGACTGCGTAT	alt_5713_new	18	24	25	19	23	14	15	15	18	7
TGGGCGGGCTTGTAAT	ref_5713_new	20	16	23	25	15	18	11	11	21	25
GCAATTCTAACGAACC	alt_5713_new	35	43	37	33	32	49	46	32	34	32
TGGCGATGTGTATCTT	alt_5713_new	3	0	2	5	0	5	5	1	7	3
AATGCGTTGCTTTCAT	alt_5713_new	4	7	6	13	8	7	12	6	7	7
CCCTGCGCACGGGTTT	alt_5713_new	33	48	55	36	50	36	47	40	53	33
CGCAGCAACTGAGCAT	alt_5713_new	0	0	0	0	0	0	0	0	0	0
CTGGTTTTGTCCGGTC	alt_4642_upstream	72	57	75	64	32	63	40	69	43	65
GTGCGGTCGCATCATA	alt_4642_upstream	21	23	22	27	26	20	17	28	32	28
TAGCCTAAACCTTGAC	alt_4642_upstream	12	13	16	14	9	10	6	7	8	8
CTTCCAGGGGCTACCG	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
TATCAATCGCCATCAC	alt_4642_upstream	22	31	44	31	22	22	22	19	15	26
GGTTTTATTTTGAGAT	alt_4642_upstream	68	58	92	99	53	73	54	90	62	72
TCATAGATCTGACAGC	alt_4642_upstream	28	7	37	30	19	33	13	33	17	25
GCTCTCTCGATCATAC	alt_4642_upstream	8	3	6	8	4	3	5	8	13	7
GCTGCTTTAACACTTC	alt_4642_upstream	26	17	37	20	16	20	26	29	14	34
GGGTTCAGGACGATAC	alt_4642_upstream	32	27	51	44	40	36	32	33	32	41
TTATAGCATCACGCGG	alt_4642_upstream	13	13	21	21	14	21	6	12	12	23
CTGTCGACAGACTCCC	alt_4642_upstream	12	18	20	16	26	20	23	11	27	14
CATTTCTAGAGGTCCA	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
AATTTTTGTCATATTG	alt_4642_upstream	62	71	69	57	51	45	68	51	60	46
GGTTTGGTATCATCCG	alt_4642_upstream	19	16	48	32	23	33	23	42	33	31
CTCAGTTAAATGAGGA	alt_4642_upstream	4	9	19	13	7	11	14	8	22	15
TAGAATGTTTACGGAG	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAATTCCTTGTGT	alt_4642_upstream	41	39	54	58	41	38	43	49	40	47
TTCGATACTTCCCTAA	alt_4642_upstream	50	52	67	48	46	43	43	49	50	55
CCGCGCTGGGTGACAG	alt_4642_upstream	10	9	6	8	3	4	8	6	5	6
TCAAGAAGTAATCGAG	alt_4642_upstream	19	11	22	8	17	16	15	21	8	16
TTTGTCAGCATTGCTT	alt_4642_upstream	3	12	17	7	5	13	11	8	11	8
TTCAGCATCAATATAC	alt_4642_upstream	87	87	98	93	68	67	85	102	86	83
GAGATCGACTTTCACT	alt_4642_upstream	4	2	2	4	5	5	3	1	1	8
GCTTTCGACAGTTCAC	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGGGTACTCCGTG	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCTCTTGCCCGGC	alt_4642_upstream	10	17	27	14	6	15	18	6	15	18
ACAATGGTACCCGTAT	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTGTTTAGTAAGT	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
TCTCGGTTCGCGGGGG	alt_4642_upstream	63	50	86	97	60	50	57	84	61	47
ATTGTACTATTCAGGC	alt_4642_upstream	14	14	15	8	8	15	9	6	7	9
TTCTCGTTAACGGGAT	alt_4642_upstream	38	31	44	42	49	31	20	38	31	36
CGTGTTTCTCTTTTAG	alt_4642_upstream	7	5	10	8	5	9	4	16	12	5
TTGCGCCCCAGGTCGC	alt_4642_upstream	10	14	9	16	7	17	4	8	14	8
TCTACTTGATATTCTA	alt_4642_upstream	45	46	50	49	43	46	54	50	47	36
GTCAACGTTATTTTGA	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
CTTGACCGAAGATTAG	alt_4642_upstream	12	6	6	6	4	9	3	3	3	7
TTCGCCTAGAAATATG	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTGTACTTCGGG	alt_4642_upstream	6	5	5	4	1	8	3	1	2	4
TATCAGACTACTTCAG	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
CCTATTGAGAATAATT	alt_4642_upstream	20	19	30	27	23	15	15	29	19	20
GCAAGAGCAACTGAGC	alt_4642_upstream	4	7	11	7	6	10	14	13	7	5
GTCGTGTCCAGTAAAG	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
TTGTATAACGCAGCTG	alt_4642_upstream	11	12	12	15	11	11	15	7	10	14
CCGTTCGTGAGGGTCC	alt_4642_upstream	29	28	34	27	21	21	14	20	22	21
CATTCGCTTCTATCGT	alt_4642_upstream	1	3	7	6	2	3	6	3	5	2
TGTACAACGTTCCCTT	alt_4642_upstream	40	37	60	46	46	39	39	42	52	33
ACGGCTTGCATCCCAT	alt_4642_upstream	11	6	11	8	7	6	6	4	4	4
GGCTGTGGGTTCTGAG	alt_4642_upstream	60	50	72	81	50	77	53	69	56	59
CAGCATATTGCTTTCT	alt_4642_upstream	7	7	9	3	9	3	7	1	3	4
ACCAGACTCAGATCGC	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
CACGATTTAAGTAAAT	alt_4642_upstream	10	9	21	12	9	15	5	16	10	15
GTTGTGTCATTTTTAC	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAACTAGATTTGC	alt_4642_upstream	10	3	11	5	4	10	7	6	10	5
TTACATTACTTCTTGC	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
TCGGAGTCGAACCTTG	alt_4642_upstream	7	10	13	9	6	12	13	15	15	11
GGAGTTAGTGTTCTAG	alt_4642_upstream	89	65	70	60	62	79	58	60	64	61
GTGCTAGACGACATGC	alt_4642_upstream	11	5	9	8	7	9	8	6	14	10
GGTGATATGCGGTCCC	alt_4642_upstream	5	5	3	2	3	4	3	5	4	2
TTAATGTGTTTAAATA	alt_4642_upstream	5	5	6	8	3	5	6	5	1	1
TCGAATATCAATCCTA	alt_4642_upstream	38	31	56	48	41	31	24	44	41	34
CCTTTTCATAGTAGCA	alt_4642_upstream	13	16	16	12	12	11	11	13	12	13
CCCTCGAGTCGATCCC	alt_4642_upstream	48	35	44	58	44	46	39	53	48	38
CTCGATTGAGTCTCTG	alt_4642_upstream	26	20	17	20	16	16	21	12	26	13
CGGTTTCAGTTCTGTT	alt_4642_upstream	63	35	85	48	44	56	60	57	34	52
GTTCTGGCTCCACTGA	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
CGACTCGACATTACTC	alt_4642_upstream	30	17	23	18	19	19	23	16	19	24
GACACACTTTCTGCGC	alt_4642_upstream	30	33	41	25	11	18	30	25	28	20
TTGATTCAATATTTTG	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
GGATGCGGACTTACCA	alt_4642_upstream	2	7	3	5	5	5	9	3	2	4
CGCACACCCACTGAGC	alt_4642_upstream	55	57	68	71	35	51	55	47	49	53
TATAGCGTGCAGTACC	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
AGATGCCTTTTTGATC	alt_4642_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGATCTTTTTTTC	alt_4642_upstream	192	143	254	192	135	186	162	160	173	183
CCTGGCTATTCCAATC	alt_4642_upstream	1	0	2	5	1	4	9	4	4	2
CTACAGAAATTCCTAA	alt_4642_upstream	4	4	2	7	4	2	2	2	2	4
TTGGGGCATGTGGGCA	alt_4642_upstream	17	17	40	29	21	31	28	22	25	25
CCTAGCCTCGGGACCT	ref_5902_new	23	29	29	29	42	30	41	31	38	25
AAACCCAGTTCGTCAG	ref_5902_new	26	30	30	20	24	21	36	31	29	22
GTCGATGGTCATGGCT	ref_5902_new	7	3	11	12	3	4	5	7	14	9
TGTGTTTTTTTTATTT	ref_5902_new	51	41	58	47	48	45	57	56	68	51
TTATTGTTGCTCTTTG	ref_5902_new	9	37	22	14	18	14	31	6	21	18
GGTAATATTGGACATT	ref_5902_new	7	9	6	4	7	5	10	8	14	12
TCGCATTTAGGCTCTA	ref_5902_new	55	56	74	66	70	43	76	52	80	51
TGTATTTAACACTGTT	ref_5902_new	7	8	6	8	7	8	12	4	11	10
GGTTTTACATTTTTCT	ref_5902_new	58	41	57	44	52	48	52	43	56	32
CGCGACTCAGAGAAGC	ref_5902_new	101	132	170	142	126	111	119	126	142	131
AGGCAAGTGTACAACC	ref_5902_new	5	15	7	3	10	3	7	5	9	5
AGCTCCAGGAATTTCT	ref_5902_new	26	20	28	18	16	19	28	12	22	27
ACCGCTATTGGCTCTC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GCACTCGAATATCCTG	ref_5902_new	157	199	192	170	181	169	199	140	207	154
ATCAAACTTAACTGCA	ref_5902_new	57	77	68	71	81	76	60	65	69	59
TTTGGGTGCGGCCCCC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TCGGAGAGCTTTCATA	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CTTAAGAGCACTACTC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CTGTCTCGTCGTCCGT	ref_5902_new	5	10	14	16	9	14	15	9	19	12
CGCTCAAGATAGGGTC	ref_5902_new	3	5	0	6	4	4	2	3	1	0
ACGGTCCCTTGTAGTT	ref_5902_new	90	111	126	91	104	97	95	82	121	103
AATGGTGACTGAAGTC	ref_5902_new	42	38	64	40	34	30	61	29	46	32
CGGTTGCGATTTACTC	ref_5902_new	14	25	20	20	28	22	19	19	32	17
ATGATCGCGCTCGTTC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
ATGGGGGGCACGGGTT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GTGTGAGTTTATTGCC	ref_5902_new	8	16	19	13	9	12	17	10	17	7
AGGTATCCCCAGTTAG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GTATCTGTTGCCGTGC	ref_5902_new	93	130	104	105	124	109	126	91	140	79
AGGTTGCGGATGCATT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GACTGTAGTCTGGCTC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TTTCGTACTCCTTTTC	ref_5902_new	7	7	6	8	13	5	17	10	11	3
CCTCTCAATGCGACCA	ref_5902_new	16	19	22	18	18	14	24	9	19	11
ACTATTGTGAGGTGCC	ref_5902_new	39	22	30	24	28	24	32	24	19	15
GCTCGCCTGTTTACAC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TGTTATTGGAAATTCT	ref_5902_new	5	3	10	5	5	3	4	5	10	10
TGGTTTATATTGGCAT	ref_5902_new	20	37	23	29	35	27	29	15	22	19
TCCACCTACCGGGCGG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TGTTGGATGTAACCTG	ref_5902_new	12	15	17	18	17	6	19	14	17	17
ACGAGGCACTTAACGG	ref_5902_new	39	26	35	32	26	33	28	29	40	30
CCTGGATATGGACTCC	ref_5902_new	5	10	14	13	13	13	17	9	17	12
CTATGACTTCAGGCTG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TCGGAGTTAAGGCATG	ref_5902_new	9	9	17	7	19	9	18	15	22	9
CACAAGATTAAACACG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TCGATCCAAATGTGTA	ref_5902_new	22	27	25	16	30	27	48	25	38	20
TGGGGCCTTCATGCAC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TTGCTGTGACGAGCTT	ref_5902_new	25	25	28	25	27	28	38	23	22	23
AGGCACCCTCTTTGGC	ref_5902_new	64	69	85	60	50	49	56	40	80	52
CCAAACGATCTAGGCC	ref_5902_new	16	9	19	6	11	5	15	13	16	8
CGGACTTCATTAGCCA	ref_5902_new	9	11	20	1	11	12	6	6	15	10
CGAGCTCCTGGAGTTT	ref_5902_new	8	17	13	12	14	8	17	11	14	7
GTGTGTTGTGCGTTTC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GTCAAAGTAAATGGTA	ref_5902_new	156	198	174	169	175	138	187	160	201	172
GCCTTTTTTAAGGTTG	ref_5902_new	17	16	16	20	17	21	30	12	13	13
TTCACCTCCGCTTCCT	ref_5902_new	3	1	6	3	1	0	3	0	0	1
ATGTCTAAGAGGACCG	ref_5902_new	16	24	22	9	19	13	12	14	18	8
ACCCCGCTCACGCCTC	ref_5902_new	74	112	114	116	140	91	131	107	143	71
TATTTACTTAACTCGA	ref_5902_new	23	18	27	22	18	33	27	24	21	25
TGAGCTAATTGGGCTG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CAGGGGCTCCTTTTCC	ref_5902_new	7	3	11	6	8	5	1	10	5	7
GTATATGATTCGAAGT	ref_5902_new	16	25	22	25	24	13	20	16	12	15
TAGAAACATTCGGTAA	ref_5902_new	32	34	33	24	13	22	26	15	20	17
ATGCACCATCTCCAGA	ref_5902_new	9	7	8	7	22	8	19	14	18	8
TATAACGGGCCCATAT	ref_5902_new	92	116	155	121	98	105	130	59	135	89
TGTCGGTCTGGGGCGC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GGGATTTGTATCTGAG	ref_5902_new	2	3	2	3	1	0	3	4	1	0
GGTCGCTGCAAATTCG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TCAGAAGCCACCGGAA	ref_5902_new	0	0	0	0	0	0	0	0	0	0
AGGTTAACCGGCGGAA	ref_5902_new	49	64	65	54	50	42	69	51	56	44
AGTCCAGTGCTTCTTC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TTAAGTAAGGTTCCAG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GGCTAAATCTTATTGT	ref_5902_new	28	20	25	24	14	34	23	24	33	25
GTTGGCATGTTTAGGC	ref_5902_new	12	14	20	11	15	10	15	14	14	5
CACCGGTCTTGGCTAC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
ACCTCTGCCGCATAGG	ref_5902_new	25	52	51	56	48	37	56	34	67	27
GTCCAACCAATCTACG	ref_5902_new	17	17	35	16	30	17	32	18	30	19
ATGCTCTTCCCAGTTA	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TGTGTGCTCTTTCCTA	ref_5902_new	26	48	36	37	39	30	51	29	50	23
TTCAGCATTTTCTAGT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TCACCCTCATTCGCTA	ref_5902_new	35	28	22	25	18	20	21	23	29	18
CGTCGACCCATCACAT	ref_5902_new	2	4	4	3	7	0	7	2	8	3
CGCCATATGGCTTTCA	ref_5902_new	63	42	67	83	44	57	41	61	47	58
CGTTCTATAGAATGTT	ref_5902_new	15	17	13	4	7	4	12	3	23	7
ACTGGGATTTTGGCGT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CCCGATCTCCATCTTA	ref_5902_new	34	207	54	55	191	36	202	52	206	42
GTGGTCATTTGTTACT	ref_5902_new	23	49	29	17	51	33	45	19	49	22
AATTCTGGCTTATGTG	ref_5902_new	21	32	16	24	27	16	21	18	29	18
TGGTGTCTGAAAATCC	ref_5902_new	27	21	23	30	42	39	23	22	34	17
ACTCCGTTCAGGGGAG	ref_5902_new	2	3	6	3	2	4	3	8	6	1
CTTTGATTCCCTTGTC	ref_5902_new	55	64	64	56	70	53	81	57	75	64
GCCGAGCTGTATGTGC	ref_5902_new	8	18	8	9	8	4	7	8	5	8
CTTGAATTATTAACAG	ref_5902_new	4	10	11	5	6	7	9	8	14	13
TACCTTACCCAGTTTC	ref_5902_new	42	42	35	44	44	48	49	27	48	34
TTTACTTCGTGGAGTT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TGGAAAGGGAAACCTG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TCCGTTCTTAGCAGTG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
ATCTCGCACTGTTTAA	ref_5902_new	0	2	0	0	1	0	0	1	0	2
TGGTACCGTGCCGTGG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TAGTAATTATGGAATT	ref_5902_new	5	5	5	11	5	6	5	5	7	5
AATACCGTTTATGCAG	ref_5902_new	5	8	2	4	6	1	11	5	7	5
TCGGTCTCAATATTGT	ref_5902_new	16	30	7	8	26	7	33	9	38	6
ATATAAAAATTTGTCT	ref_5902_new	26	40	43	38	35	27	35	22	49	20
TTCTAGAATTCATAAC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GTTACGGATCTACCAT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
ATGTGAAGGTGAATTT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CTCTCGATTTGGAATA	ref_5902_new	59	71	83	88	71	86	83	51	86	58
TTTATCAACCTTTCGA	ref_5902_new	106	119	120	106	102	112	132	88	151	91
CCGCTTCAAAGTAAGC	ref_5902_new	69	63	76	71	66	51	61	56	66	49
ATGGTTTATATCCGCG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TTTCACATTCAACCGT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CGGATAATTTTTAGGA	ref_5902_new	86	79	91	93	87	81	80	76	94	80
TTCCCACCTGTGTCCT	ref_5902_new	21	33	26	26	27	26	29	33	23	10
TCAACGCGGTAAGTTT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TTCGATTTTACTATAG	ref_5902_new	25	31	26	29	32	28	33	35	51	37
TGTTCGTTATATCATG	ref_5902_new	84	107	97	92	68	76	100	84	98	66
CACTCTACGATGTGAC	ref_5902_new	14	21	10	15	13	10	15	16	18	12
GCAGCTCATTCGATCT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TTGGGTTTACGTCGTA	ref_5902_new	4	2	3	9	6	4	5	5	8	9
CCCTGTTGAGCCGCAG	ref_5902_new	4	4	5	3	3	1	1	4	2	1
CGTCTCCCCCTTAGCG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
GGATTCGGATGCATTC	ref_5902_new	5	2	0	2	6	2	1	2	3	4
GAGTCAACACTGTTGT	ref_5902_new	17	24	15	21	16	23	16	25	23	14
TCGTTCATTTCGGGCT	ref_5902_new	42	52	56	39	45	44	46	50	43	35
TTCCACGGAGTGCTTG	ref_5902_new	3	8	3	4	4	5	5	6	7	13
CTTACACCTTGTTCCC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TCGCTGTTTTGCGGTA	ref_5902_new	20	51	43	24	37	27	56	27	41	24
ATCCGGTATTACTCTT	ref_5902_new	7	12	9	15	11	10	20	24	17	9
ATTCTACTCCATTTCT	ref_5902_new	17	22	26	18	31	20	24	24	25	16
AAGGGAATGTGACAAC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TGTTTTCATAAAACTG	ref_5902_new	20	14	14	16	12	9	18	9	12	14
GTTGGTGCTGCGTTCC	ref_5902_new	7	7	6	8	20	7	14	12	5	10
TAATCACGGTCGGGGA	ref_5902_new	20	25	19	10	26	13	24	13	17	15
ATCTCCTCTATCAGAA	ref_5902_new	56	49	41	46	75	44	61	61	52	52
CTTTGGCTTTGTTTTT	ref_5902_new	13	14	26	14	21	18	16	23	29	15
GGGTGTTCTTGTCCAC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
TTTCGTCGTACGATTG	ref_5902_new	44	52	52	41	91	61	74	48	63	25
TATGTCCATTGCCCAT	ref_5902_new	16	13	10	11	19	10	21	17	32	13
AGTGCTGCCCTTGAGG	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CAAACAAGATAGAAAC	ref_5902_new	15	12	9	14	8	8	15	9	19	16
CTTCCGGACGGCGACC	ref_5902_new	0	0	0	0	0	0	0	0	0	0
AATCTTCACGGTAGTT	ref_5902_new	18	15	18	15	12	12	15	17	14	14
CGCGTCCGCTGTAAAA	ref_5902_new	25	37	43	30	39	42	38	31	52	18
TCTTGTTAAGTGATCC	ref_5902_new	31	36	35	26	24	33	29	35	30	33
GACTCCCGCACTGGGG	ref_5902_new	23	26	24	20	31	24	43	11	23	15
ATTCCAAGGTTACGGT	ref_5902_new	0	0	0	0	0	0	0	0	0	0
CGGCACAGAATCAATG	ref_5902_new	72	89	102	76	97	74	140	74	103	62
AGTGCATTCTACCCGG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
ACTAGCATTCACGTCC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CTCCTCCCAGGTATTC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
AGTTACCCACAGAGTG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CGCGCTCTCTCTGATT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TGCCAGGAATCCTTTC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CAGTGCTTTCCATGGA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GCTTTTATACCGTACT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
AATTCTTATATCGTGG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CTTTTATCGATCGAGC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CCCCCCACCTCTGGTG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
ATTTGTTTTACTATGT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CGTGCCGATCCACTGT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TACTCTCTTGGCACTT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
AGAAGTTTCAGTCTAT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TTGGAGGTTTTGAGGG	ref_4481_missing	5	19	19	7	10	6	20	5	27	7
AACTGCTAAGGATCAT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GTTGGGTTCTCGTTAA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TCTATCCCACCCAGTT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CTCCTGCCGCGGCCTA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CGGAGAAATTGAAAGA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CCCTCCAAAAGCGGCC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TCCATAAAAGAGTGTC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TGTCATTCGGTCGATA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CAGTTCATCAGCATGA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TTTCCACGTAATACCT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TATTTTTTAGTCGTAC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GGGCAACTCTTAGCCT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TGTGAGACTGATTCAA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TTGCATCGTCCTATCC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TACTTCGTCCTTGTGT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CTCAGGGCGGCGTATC	ref_4481_missing	4	5	7	5	5	3	0	3	11	3
CCCACCATGCCGACGG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
AATGTCCAATGTAATG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TAAGCTGATTGAGGAA	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
ATACTTGTCTTGTCTA	ref_4481_missing	3	10	10	7	18	4	18	8	12	8
TGTTAGTTTAGCCTTT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
CTGGATACATGCCTCT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTTAACTATAGG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
AAGCGTTGGATTCATC	ref_4481_missing	10	10	9	13	24	14	21	6	21	6
CCATTTAGGGTGCAGC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GGTTAGCAGGGGGCTC	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GGACCTTTCAAGCACT	ref_4481_missing	15	35	20	24	44	26	36	15	30	21
GGATTACGCAGTTAGG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GTGGTGCAGCCGGTTG	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
GGACTTTCCACTCTTT	ref_4481_missing	0	0	0	0	0	0	0	0	0	0
TTCTATGTCTCTGGAC	ref_5114_RC	108	59	125	109	57	123	62	80	53	99
CTGCTGCAGGAAAAAT	ref_5114_RC	176	87	225	217	89	168	88	169	108	141
CTATCTTATCTGCGGC	ref_5114_RC	93	41	104	78	34	86	30	72	45	69
TCTAATACTGTTTCAA	ref_5114_RC	13	18	31	25	14	23	19	34	6	23
GTGATGCCTTCTTTGA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TTCAAAGTTGACCCAT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TAATCATCCGGGGAGG	ref_5114_RC	46	29	45	40	25	35	19	57	22	50
TATAATAGCTCGTTTA	ref_5114_RC	3	0	3	2	0	1	0	1	0	3
TGGAATTCGCGATTCA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GTGAGTAGGCATGCGC	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
AGGCCTCGGTCTAACT	ref_5114_RC	131	77	156	122	66	122	75	134	76	121
ATTTAGGACATGCCCG	ref_5114_RC	45	22	48	30	16	44	21	38	18	37
TCTCGGATTCCGAATC	ref_5114_RC	102	54	144	117	55	107	60	92	57	101
CTATTCCTTAGGTGTA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GTGTGAACCGTTCCAG	ref_5114_RC	52	22	51	48	37	44	31	47	19	46
GATCTAGGCTTAGAAC	ref_5114_RC	31	26	38	40	24	21	32	34	27	32
CTAAAGAGTTTGCCTC	ref_5114_RC	44	37	44	39	26	42	30	33	22	32
GAAAGCTTTCTTTTGT	ref_5114_RC	73	37	73	69	36	76	33	71	38	70
TCGAGCAGCGTAACTG	ref_5114_RC	28	17	29	22	21	32	18	32	15	29
CCGTTGCTCCCTTCAC	ref_5114_RC	40	23	77	52	33	47	16	45	22	52
GCTCCATTAAGCGGAC	ref_5114_RC	136	59	156	151	78	124	65	144	63	129
CGAGGTACGGTAGTTC	ref_5114_RC	169	115	236	210	103	165	104	191	104	170
ATCTGTTATAGGTAGG	ref_5114_RC	116	64	136	123	74	97	53	94	65	93
ATGGAATTCACTTACC	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
CTTCGCGCTTACCGGT	ref_5114_RC	36	17	43	48	30	27	23	40	19	26
AGTCCGTTAGCTCTCG	ref_5114_RC	42	25	66	45	28	65	42	45	25	40
TAAGACCTATCTAAGA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TACTTTGACCGCAGAA	ref_5114_RC	63	20	75	59	22	42	27	65	22	53
CATCATCTTCACATGT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GCTATATATGACAGAG	ref_5114_RC	12	12	14	14	6	12	5	10	4	4
CCTTAGTCCCGCCCTT	ref_5114_RC	49	24	64	67	32	48	29	36	21	50
TCTTCTCGGGCAATCT	ref_5114_RC	112	71	154	124	67	114	72	123	68	113
TAAATTACTTCCTCAC	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
ATGTCACCCTTCAAAC	ref_5114_RC	35	35	47	44	35	27	39	51	36	27
CCGAAACGTATCTAAA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
CTACATTGCCCATGGT	ref_5114_RC	36	17	37	40	13	34	17	30	27	25
AGCCACGCATCGTCGG	ref_5114_RC	34	18	45	43	15	49	23	22	20	27
TCGCCCTTTTGCTAGG	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
ACTTCCGGTTACGGGC	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
AGCAGCTCTGCACTTT	ref_5114_RC	228	125	304	288	151	234	139	253	136	217
CTTTCAGTAGACATCC	ref_5114_RC	341	214	378	363	205	342	209	354	204	321
AGGAGCTCTACTTAGG	ref_5114_RC	46	16	55	39	31	24	21	38	31	39
CACTAGATGTTGGGCG	ref_5114_RC	15	11	17	23	18	20	12	15	15	17
GGCCTTAAGTAACGGC	ref_5114_RC	17	9	38	31	9	31	23	22	12	20
CGGCGTTATTTGTAAG	ref_5114_RC	72	41	101	89	43	65	34	70	60	76
CGTTACAACTCCGTTA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GGTTGGGCGGGTACTG	ref_5114_RC	28	18	26	27	11	21	16	24	14	21
ACTACTGCAATGATAT	ref_5114_RC	101	66	130	94	63	92	62	105	74	87
AGTTGTTGAGAGAATT	ref_5114_RC	24	11	28	27	8	20	31	22	16	22
TCTTATCACTTCCGAT	ref_5114_RC	171	87	201	160	91	156	74	161	103	119
CGGTGAGGCTGCGCCT	ref_5114_RC	18	12	26	18	11	9	12	18	16	10
TGTGTGTAAGGGCTGT	ref_5114_RC	0	3	1	1	3	1	2	1	4	3
ATTTGTTATGGGATCA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TTCCTATTGACTCTCG	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GTGGCGCCTTTGCTAT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TAAGGACGCCTTTTTA	ref_5114_RC	11	5	16	17	8	10	7	11	5	9
CCGGGGAAGTAACGCA	ref_5114_RC	109	65	139	110	67	111	65	114	61	90
GTTAGAAGACTTGACC	ref_5114_RC	124	61	115	135	71	100	59	88	57	104
GTTATTCTATATTCAT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GCATTATATGTCCCGA	ref_5114_RC	61	22	77	62	36	44	40	38	29	45
CGAGTCCTGGCAAGAC	ref_5114_RC	72	35	64	80	24	62	32	35	47	59
TCCCATCCAGGTGCTT	ref_5114_RC	60	27	55	64	25	55	29	42	24	57
ACGAACTGCTTCACAA	ref_5114_RC	172	94	217	186	71	173	108	182	83	145
TTCTCGCCTGCCCTTT	ref_5114_RC	137	81	171	161	104	129	96	127	85	106
TTTCTAGTTTCTCATT	ref_5114_RC	35	12	36	18	13	26	16	30	27	21
AACGAACTGCTGTGTA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GGCCCCTTCTGAGGAC	ref_5114_RC	65	36	90	95	52	68	54	78	42	65
CCGTTGCGTCCGTAAG	ref_5114_RC	32	28	51	33	15	38	17	34	18	28
GTTTTTGGCGAATCAT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TTTGGTTCCAGTAGAG	ref_5114_RC	48	37	71	51	39	71	37	41	39	61
TCAGTACTCCGCCATT	ref_5114_RC	109	47	109	91	31	102	53	113	41	82
TTTCATTCTTTTTGGG	ref_5114_RC	361	160	399	405	165	322	198	340	164	247
TGGGTTATATGCTAGT	ref_5114_RC	77	53	97	109	43	95	60	90	61	86
TGTTATGCGATAACTT	ref_5114_RC	25	19	41	23	14	22	20	41	23	18
ATGGTTGGTTCTAGAA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GGTTTTGGTATGAAAT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GTACTTGTGCGTGTTA	ref_5114_RC	66	29	68	71	37	42	37	54	35	43
TCGAAAATAGGCCTAT	ref_5114_RC	50	28	61	45	14	30	17	33	24	45
TTTAGTGTCATGTCAA	ref_5114_RC	122	82	163	135	82	126	96	139	84	117
ATCTGATGCATTCGAA	ref_5114_RC	67	36	76	80	34	52	39	72	42	67
CGCATTCTATCGTCAC	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
CTCAGGATTCTACTTT	ref_5114_RC	64	24	78	70	24	50	19	43	26	44
TACATTGAGGCCATGC	ref_5114_RC	447	228	607	519	274	395	264	462	266	408
ATGACGCTTCTTCTTC	ref_5114_RC	219	104	260	205	90	192	95	161	89	164
ATCCTATCACGCTAGA	ref_5114_RC	45	19	49	38	25	35	22	37	33	33
TACGCTTTAGTTTTGC	ref_5114_RC	17	18	21	19	16	11	11	22	7	22
TGATCTTATTGGTTTA	ref_5114_RC	87	51	109	95	28	73	54	100	64	75
TCGTGGTCCTGCTTTA	ref_5114_RC	110	69	116	116	69	115	78	89	82	91
GCAACCTCCGCACTGA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TTACCATGGAAGTTCG	ref_5114_RC	32	30	37	38	37	31	28	37	27	36
TGTGATTCGTGGACGG	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
GACGGATCCCTGAATC	ref_5114_RC	87	48	100	100	55	85	48	79	47	88
CCCTATTGTTACTTTG	ref_5114_RC	2	12	6	9	6	7	4	7	10	2
AGTGAATTCAACATAA	ref_5114_RC	72	38	114	93	60	93	63	82	57	83
GCCACTCGTCAACATG	ref_5114_RC	35	23	38	29	12	18	23	29	7	24
CATTTGTATATTAATA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TGGGTCGGAACATCCC	ref_5114_RC	37	19	42	33	25	31	17	29	23	27
CTAATCTGCTTTCGGC	ref_5114_RC	217	91	263	193	107	189	110	221	110	187
GAATTGATACATATAC	ref_5114_RC	48	25	36	56	20	39	21	49	18	37
GTGCTACACCTAGCGC	ref_5114_RC	60	33	68	48	34	50	35	52	26	36
AATGCAATTTTACGTC	ref_5114_RC	37	26	59	48	25	55	22	39	37	44
AGAAACGTTCTTCGGT	ref_5114_RC	30	12	37	34	11	32	17	23	26	32
CTTTCGTTGCTGTTCT	ref_5114_RC	97	49	115	88	50	79	54	84	52	90
TGGCCAGGCCGGGATA	ref_5114_RC	25	22	60	60	20	44	16	45	29	41
CTGCAGGAACCTTCGC	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
CCATCCTTGTGTCATA	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TCACGTCCGTTTCCTA	ref_5114_RC	39	23	68	50	26	58	27	41	28	37
TAGTCTTACGGCCCCT	ref_5114_RC	89	57	126	95	49	101	40	69	68	61
CATCTACGTGTACCTT	ref_5114_RC	2	2	1	2	3	3	1	0	2	0
TCCAACATCTTAAACA	ref_5114_RC	11	5	7	10	3	6	4	12	7	8
TGGATTAGTCGATAGT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
AGTCGTCGGTCTGGAA	ref_5114_RC	5	8	6	12	11	9	13	6	12	3
CTCATATAACCTCAAT	ref_5114_RC	160	98	222	183	88	152	96	163	104	160
GCAATAAGCCATACCT	ref_5114_RC	148	84	163	160	82	137	88	140	76	150
ATAATCGACGTCCTAT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
TATAATGCTTGTAAGG	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
CTTCAAGAGGGTCGAG	ref_5114_RC	175	113	212	200	86	163	105	161	87	178
TAAGCCATCGGCCTTC	ref_5114_RC	105	56	131	112	49	93	66	102	74	111
TTTTGGGTATTTCCAT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
CACCTACGGTGAACAG	ref_5114_RC	110	82	164	149	80	115	89	126	104	100
ATTGCTTGTAGCATTT	ref_5114_RC	0	0	0	0	0	0	0	0	0	0
CTAGCCCTTTCGTAAG	ref_5114_RC	33	21	63	41	28	45	39	49	27	38
GATTTTCGTCAATTCT	ref_5114_RC	91	41	98	91	42	88	37	84	36	75
CTATCATGGTCATCTG	alt_3729_missing	5	9	4	6	8	9	8	2	5	4
ACCGTTACCCCCACTC	alt_3729_missing	8	14	9	10	8	13	16	12	15	6
GGTGTGCATAGATCCG	alt_3729_missing	12	37	31	22	29	18	23	11	23	19
TGTTCGGTGATGCCTG	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
CAAATGGGGACGTTAC	alt_3729_missing	11	12	9	12	21	9	17	14	21	7
CAGTATTTATCTTTTC	alt_3729_missing	26	37	46	32	32	32	35	34	44	29
AGCCTTCTTCGGTTAT	alt_3729_missing	9	13	13	10	16	6	10	11	20	10
TTACGCTCAGTCTACC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TGCGTGCGTGCTTTAA	alt_3729_missing	7	8	7	4	6	8	15	13	9	11
CAATTTATGGTCTCCA	ref_3729_missing	9	13	7	9	10	6	10	3	6	3
CCGCCGCTTGCACGGC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
ACATTGACTATTCGTA	alt_3729_missing	2	5	3	4	8	3	3	1	5	5
AAGTCTTGCTGAGTTT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
AGGGAACGGGCTAAAG	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GCGCTACTGGCCGAGT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
CGCACCAAAACATCTA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
AATATTGAAGCAGGCG	alt_3729_missing	3	11	6	3	7	5	0	4	2	3
GGATCTTTAAAGCCTC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TATGAACGAGGTTTTT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
ATCTTCGCCTTTCCGA	alt_3729_missing	10	16	10	14	9	11	15	10	25	10
AGCACCTGAAGCCCCT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
ATGTGTTCGGAAGGAT	alt_3729_missing	4	1	4	1	11	2	7	4	2	4
GTGTTCATTATCTAAC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GGGCACGACCCGGTGG	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TTTCCACGGACGTTCG	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GCAGTGATCGCGAAGG	alt_3729_missing	10	21	11	9	16	5	11	4	19	12
TTCTCAATGTTAGTCC	alt_3729_missing	8	6	6	5	15	2	14	2	16	4
TGTGGGAGTAGGTAGA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCTAGGTTCAAA	alt_3729_missing	8	6	4	3	5	4	7	5	9	2
GTGCGCCCACTTCCCT	alt_3729_missing	4	6	2	3	5	2	8	3	7	9
TCAGCGCTTAGCTCCG	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GGTATGGAGCCACATC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TACACTTCTGCCCATT	alt_3729_missing	3	25	5	5	17	1	21	2	24	2
CCTGATCCACGGCCCG	alt_3729_missing	3	4	2	6	9	6	7	1	0	4
AGACGGCACGCTACGA	alt_3729_missing	1	2	2	2	1	2	5	0	1	0
CTACTAGCGCACGCTA	alt_3729_missing	11	29	12	16	18	16	20	13	21	11
TGTTCCAGCCTAGTTT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
CAATCGCCTAGCGTTC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTTGCTGTATTG	alt_3729_missing	18	16	11	10	22	13	21	21	16	11
CCGTTTTAGCTTTCTA	alt_3729_missing	17	23	20	16	22	13	25	14	13	13
TACAGATTACGCGTAA	alt_3729_missing	26	38	19	15	26	26	30	27	26	20
AAGGGTTTTTACTCCA	alt_3729_missing	13	21	14	10	26	9	14	11	33	15
GAGCCATCGGAGTGTA	alt_3729_missing	6	23	10	16	15	14	20	10	15	6
CGTTGGCATACCTCGC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TCCCTGTTACTTCGTG	alt_3729_missing	3	10	10	2	9	10	14	10	17	12
GCTCCCTTAGTCGAAC	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
CGATTGTCCTCTCGTT	alt_3729_missing	12	26	19	11	10	12	21	10	14	6
GGTATTCTTCTTGTCA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TACGATACAGAGCATT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TCTCTCATCGGGATGA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
CACTTTCGTATCAGAG	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GCAGGTCATTCACTCT	alt_3729_missing	10	16	4	5	8	2	5	7	7	7
GCGTCAAGCTCCACAT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TTTATCTAAATAACCA	alt_3729_missing	7	5	2	2	2	1	5	3	3	5
CCCAGGGGGCCGAGAA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GGCATTGGTGCGAGGA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GGCCCCACTAGCCCGG	alt_3729_missing	4	11	2	4	7	9	5	2	4	4
CTGGACCTGTTTTGCC	alt_3729_missing	14	26	23	14	25	35	31	20	30	19
TAGAACTTTCCAGTTC	alt_3729_missing	23	49	36	21	44	26	49	27	59	34
TGTTCACGCCCCGGGT	alt_3729_missing	25	72	29	28	65	19	93	16	77	21
ACCGGTATATCCATGT	alt_3729_missing	1	11	1	3	4	1	7	0	5	2
TTTCTCCGCTTCTGGT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TATTTAATCTGCAATT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TGTTTGTCACCGCGGT	alt_3729_missing	7	14	3	4	10	6	9	4	7	6
GTGGTCCATCGAAATT	alt_3729_missing	17	12	13	12	21	11	21	15	20	12
CGGCGCATCCATTGCA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GCCGCTTCTGTAGTGG	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
ACTTAGAGGGACCCCT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
TGTTCTGGTCAGCAAT	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
CTTAACGACCCGGTGT	alt_3729_missing	5	10	7	4	5	4	7	10	12	9
ACCTACCACTGAATGG	alt_3729_missing	3	3	3	4	2	1	2	2	6	0
TCCAAGCGGGATTTAA	alt_3729_missing	7	20	15	6	13	7	19	13	18	9
AATTATGGCGTAATAC	alt_3729_missing	18	16	20	22	16	18	24	29	16	14
ATGCCCTATCTCCTTA	alt_3729_missing	10	11	16	11	13	8	17	10	26	18
TACAATATGACTGCTA	alt_3729_missing	0	0	0	0	0	0	0	0	0	0
GTGTTTCGTTCATCTT	alt_3729_missing	19	26	23	24	27	22	39	14	28	13
TTTTCGCTGCCACGCA	alt_3247_reverse	12	9	18	14	9	14	13	10	10	7
AATGTTTAAAAACAGT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
ACGAGGGTGAATACAC	alt_3247_reverse	6	7	6	5	3	4	9	2	5	3
TTGGGCTCAGGCGCAC	alt_3247_reverse	9	8	8	4	6	5	4	8	8	4
GTGGTTCACTAATTTA	alt_3247_reverse	26	42	45	42	38	28	45	22	44	28
CACTTCGGACTCGCGT	alt_3247_reverse	0	0	0	1	0	0	1	0	0	0
TCTGTTACGTGGGCAA	alt_3247_reverse	6	3	7	5	5	3	4	7	3	8
CCTCGTTCGACGCCAA	alt_3247_reverse	31	35	39	32	39	35	48	27	47	23
CTACGACTATTATCGA	alt_3247_reverse	6	10	11	12	9	6	14	8	12	9
TGCAATACCTTTTATC	alt_3247_reverse	46	78	58	59	66	55	80	53	78	65
AGTCCTGTTCTGACAG	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CGTGCGCGTTCCTGGC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGCTTCTTTGTAT	alt_3247_reverse	96	116	142	94	118	103	141	117	128	108
TTCAGTTATACATCCT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GCATTTCCGGATTACT	alt_3247_reverse	102	97	124	101	79	106	74	97	118	93
TCTCATATTGAAATGC	alt_3247_reverse	54	74	90	71	67	53	74	58	67	58
AGAAATCATGTTTATA	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TTCGATGCGAGTGTTT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TCATTTTCCCTTATGA	alt_3247_reverse	41	54	63	45	47	49	45	49	49	34
TTCCGTTTCAAGCGAG	alt_3247_reverse	18	19	24	24	23	21	20	18	22	10
ATCTACCTAGCATTGC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTGCGCTTCTTGT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GCCGTTGCATTTTCGG	alt_3247_reverse	68	59	81	52	58	60	54	47	54	64
GTGCAGAGTGTTTGGA	alt_3247_reverse	55	63	56	60	63	37	50	65	68	51
TAGGAATGATCGAGGT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CAGTACTCGTAGCTAT	alt_3247_reverse	51	67	64	43	59	55	63	43	58	55
ACCTACTGCCGTCTTT	alt_3247_reverse	14	10	16	17	9	12	13	9	17	12
AGTGCAACCCCGGCTT	alt_3247_reverse	28	43	36	21	43	29	43	24	38	31
TTTATTGTAACTGCTC	alt_3247_reverse	49	78	68	51	80	66	84	56	71	58
CTTTATTATCTATGAC	alt_3247_reverse	1	6	9	4	9	4	9	4	4	8
AAACGCCCAGTTCAAT	alt_3247_reverse	53	67	91	75	72	62	80	57	74	53
AACTGCTTTACATTCT	alt_3247_reverse	30	34	32	21	28	19	29	33	42	22
CTCCGGCCTTCGTCTC	alt_3247_reverse	5	13	10	11	16	6	10	7	12	6
TGGTTATACTCTGCTG	alt_3247_reverse	0	2	0	1	0	0	1	0	0	1
CAATATGGTTTCCAAA	alt_3247_reverse	121	90	170	143	90	121	128	134	126	127
TGAGAAGCACGCAAAA	alt_3247_reverse	7	12	11	12	8	7	20	21	17	7
CGCTGTTTTTCCTCGT	alt_3247_reverse	16	21	18	20	8	14	21	19	21	12
ATGGCATCTCTTGTAA	alt_3247_reverse	10	16	16	24	23	13	26	17	17	17
CTTTCCAGGTTAGCAG	alt_3247_reverse	93	82	111	89	98	71	81	84	102	80
CTTTCCGTTCCTTCTC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TTTCAAATTAGTTTTC	alt_3247_reverse	72	56	67	73	58	60	70	55	76	48
CCCTGTACTATACTAA	alt_3247_reverse	10	8	7	12	9	8	12	9	12	6
TGTGTTGTCCCCAGTG	alt_3247_reverse	174	233	261	208	204	179	230	196	285	180
CTTTCTGGTATATTTC	alt_3247_reverse	13	12	21	14	18	14	20	15	17	19
GTCGGCCCTTCTTATC	alt_3247_reverse	27	26	28	14	19	11	25	16	16	16
GAGCGGTGGTTTTTCT	alt_3247_reverse	16	16	22	14	8	16	10	14	16	13
CCGTCCCTTCGTGCCA	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGTTTGATATTTG	alt_3247_reverse	25	23	34	25	34	24	22	33	38	22
GTAGATGAATATGTTC	alt_3247_reverse	0	0	3	3	1	0	4	2	1	1
CAACAATCCAAGTGAT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TGCCTTATGCCTAGAC	alt_3247_reverse	73	65	64	63	76	53	66	68	87	52
TTGATCCATGCAGAGG	alt_3247_reverse	80	61	96	83	75	73	81	44	109	62
CGCCCTGTCCAGGCAG	alt_3247_reverse	27	33	34	16	32	25	26	35	31	21
AATGTCGATTTCCTGG	alt_3247_reverse	56	44	64	50	52	43	48	54	42	55
TCGCCGGCCTCTACAT	alt_3247_reverse	6	3	3	11	4	2	5	6	7	3
GGGAGGGCGACGTAGA	alt_3247_reverse	95	76	108	93	77	87	98	68	86	90
AGACCTCAACTACCCT	alt_3247_reverse	12	22	20	13	14	12	21	24	14	24
TTCGCGTCGGAAATCA	alt_3247_reverse	9	21	15	21	12	11	13	12	15	7
GGGTGCACGGTTTTGC	alt_3247_reverse	11	21	36	14	31	22	15	21	26	20
CTGGATACCCAACTAT	alt_3247_reverse	20	26	26	14	21	20	19	19	22	12
GTAGCGTTCGAGATGG	alt_3247_reverse	4	6	1	5	1	3	2	3	0	2
CTGTTTTTCAATTTCG	alt_3247_reverse	89	61	90	57	62	61	79	56	67	55
ACCTTAGGTTGCCTAC	alt_3247_reverse	3	5	16	4	5	6	6	6	8	5
ACATTATGCTCGCATC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TATTTACTTGCTCCGT	alt_3247_reverse	16	35	31	24	17	21	30	19	31	21
TTTACTTAGAGAAACG	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CAGTTAGTGCCCGGGT	alt_3247_reverse	18	16	19	25	23	25	21	17	21	27
ACCGCGCCTTATTAGA	alt_3247_reverse	5	18	4	12	18	8	7	5	12	10
GGCAAACTTATTTCGT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CATAGGCCTGAGACTG	alt_3247_reverse	17	22	19	20	18	20	6	11	19	22
TGAGTACTGATTCGCG	alt_3247_reverse	26	23	26	28	22	26	31	17	35	24
TGCAGGTAGGTACTAT	alt_3247_reverse	27	28	38	39	34	16	34	14	27	25
CTTTAGGGTTGCGGGA	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GTATCAGGATTGGTAG	alt_3247_reverse	20	16	18	27	14	23	15	19	14	16
TTTTTGTCAGCAGGCT	alt_3247_reverse	55	70	87	60	73	50	71	52	68	68
TGATGTACGTTGGACC	alt_3247_reverse	39	58	54	40	51	47	60	48	60	42
GCATTTTTATGGGGTG	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CGCTATGTAGTAACTT	alt_3247_reverse	16	22	18	31	17	21	23	31	14	10
CTTCATCGTCCCTTGT	alt_3247_reverse	24	24	22	33	26	30	27	22	29	23
AGCGTTCTGGCCTTGT	alt_3247_reverse	7	10	12	7	9	12	9	11	18	10
TCGAAACACAATGGGG	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTCCGCTGCGGA	alt_3247_reverse	6	13	6	2	12	8	9	2	12	3
GTCGTAGGGCCGCTCA	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTTACCTGCCGAA	alt_3247_reverse	28	36	31	37	26	25	43	25	31	30
GGCCGTTGTTGCTTCT	alt_3247_reverse	16	9	16	14	22	6	11	16	15	16
TGACATTTGAATGGGG	alt_3247_reverse	95	117	108	83	133	92	116	109	113	98
TACTGGTCCTTTAACG	alt_3247_reverse	36	65	41	53	50	52	68	55	88	28
CGGACTCCTGGCTTGT	alt_3247_reverse	5	5	3	1	7	2	6	2	3	1
TTCCATGAGCCAGGCC	alt_3247_reverse	21	19	22	23	17	17	16	26	22	22
CATGGGGTGACGAATG	alt_3247_reverse	23	40	33	35	26	32	46	32	31	34
GATGTCTCTGTCTGAT	alt_3247_reverse	109	125	123	141	133	105	125	114	129	97
GAGGGCAAATGATCCC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTGAGGTCTGAC	alt_3247_reverse	12	7	13	6	7	12	3	15	14	5
TAAGACAGTGTTACAA	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GAGTATATCGGTGTCG	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
ACAGAGAAATTGTTAA	alt_3247_reverse	12	8	17	12	5	4	13	14	7	13
AAACAGCTTCTTATTC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCCACAGCGTCAA	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
AGGCGTAGCCCTCTAC	alt_3247_reverse	25	19	16	19	34	20	28	10	27	14
GGGGGAAAGGTTCCAC	alt_3247_reverse	25	18	24	20	23	19	28	9	25	11
GATGCGTCTCTGTAAG	alt_3247_reverse	10	10	15	15	11	12	15	11	19	10
CTGTCTTCTTTCTACC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GGAGCACATGTCTATA	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TCTGCTATATGGGTCT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTTCTTTGATCA	alt_3247_reverse	13	8	11	7	9	8	9	7	8	3
GCACGGCCCGTCCTAT	alt_3247_reverse	5	7	3	3	15	3	8	7	7	3
TATTATAACGAACATC	alt_3247_reverse	38	45	43	42	47	34	34	35	42	45
CCGGCGCTGTGGGTCG	alt_3247_reverse	3	3	1	1	3	1	1	3	2	2
AGATCTGATTCGATTC	alt_3247_reverse	6	1	4	4	1	6	3	3	2	2
TATTGCCCTTTCTAAA	alt_3247_reverse	1	5	2	6	11	3	3	9	4	1
GTCTGGATGGTTCTAT	alt_3247_reverse	23	30	38	17	37	39	45	39	42	21
TTTAGTAATTAGGAGT	alt_3247_reverse	18	10	17	15	9	20	18	11	20	20
CCCACGTGGCCGTAAC	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TCATACTTCCCCTCAA	alt_3247_reverse	29	36	21	34	27	13	42	32	24	23
ACAGAGGTGATACTCT	alt_3247_reverse	8	17	9	6	9	5	9	6	7	3
TTACGTCTTATTCTTC	alt_3247_reverse	20	14	18	16	17	19	19	13	28	15
CAGGTTTGGGTCAAGC	alt_3247_reverse	45	55	36	38	41	41	44	44	40	33
CCCATGGCGTATCGTT	alt_3247_reverse	40	24	35	32	38	23	37	25	36	25
TCGGGCATGTTGCGCT	alt_3247_reverse	12	8	7	9	20	10	21	7	17	8
GACCGCCAACTTCTGT	alt_3247_reverse	8	10	24	12	16	8	13	11	22	13
ATTAGTCTCGGTAACT	alt_3247_reverse	44	53	46	51	64	63	66	42	62	40
CCGTCCTCTTATCTAG	alt_3247_reverse	30	50	39	29	36	32	46	37	43	35
ATAGTCTTTATTTGTG	alt_3247_reverse	15	11	26	13	29	14	21	12	22	12
CTGGTAGTGCTTCGCA	alt_3247_reverse	18	13	19	17	15	4	11	15	12	17
AGAGGTATCATGTCAT	alt_3247_reverse	33	47	40	42	33	35	38	27	41	33
TTTAGTCAAAATTTAT	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTCTCGCCGTTTG	alt_3247_reverse	17	54	19	12	44	22	65	17	47	12
GAATTTTGTAAGGTCG	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
TATGCGGGTATGGTAG	alt_3247_reverse	0	0	0	0	0	0	0	0	0	0
CCGACTGAATTACAGC	alt_3247_reverse	8	4	10	9	8	5	4	10	5	8
GTAGCGATCTCATCTT	alt_3247_reverse	65	65	89	84	74	76	85	76	81	64
GTAGTCGTGACCATTT	alt_3247_reverse	19	15	21	18	14	18	13	9	10	16
CGCGACATCCTGTTGC	ref_5665_new	0	0	0	0	0	0	0	0	0	0
ATAGCACCGTGGACCT	ref_5665_new	6	17	8	8	14	7	20	15	20	8
GCCCTGCTCTTACGGT	ref_5665_new	1	6	1	8	13	3	9	5	3	11
CATCGGTTTTAATCTA	ref_5665_new	0	0	0	0	0	0	0	0	0	0
TTCGCAAGTCCTTCAA	ref_5665_new	32	73	53	42	91	48	99	34	95	39
CTTTGTTTGTCCCGCG	ref_5665_new	0	0	0	0	0	0	0	0	0	0
CAGTTAAAAGTCGTAT	ref_5665_new	22	53	29	23	35	17	36	20	62	13
AGTACATATGTCGCAT	ref_5665_new	38	53	39	31	105	23	85	34	97	40
TTCTGCCTCGAGTCGC	ref_5665_new	15	31	12	14	27	17	24	4	30	8
TATGCGTAGTCTTAGT	ref_5665_new	2	9	5	4	8	9	8	5	12	3
TATGGTGTCCTGAACT	ref_5665_new	0	0	0	0	0	0	0	0	0	0
AGGGGCAGAGTACGAC	ref_5665_new	9	38	17	6	28	17	22	15	29	15
AACCGCCCCAGCCCAG	ref_5665_new	7	5	9	14	11	5	7	4	14	8
TGCGCGGGCTCGGAGT	ref_5665_new	48	75	50	44	59	52	103	33	78	32
CTGTGTGATGATTATG	ref_5665_new	0	0	0	0	0	0	0	0	0	0
ACTTAAATTTACTCGG	ref_5665_new	12	20	13	16	12	15	21	6	22	10
CCTGCACTTTAGACAG	ref_5665_new	5	15	4	12	20	10	18	10	10	5
GACGCCCTGGCAGGTT	ref_5665_new	21	18	12	10	14	12	23	10	24	12
CATGGGCTGTGCGCAT	ref_5665_new	0	0	0	0	0	0	0	0	0	0
GTGGGTAAGTTTCTCG	ref_5665_new	22	32	30	17	16	19	32	16	37	11
AGCGCTTTTGGCCCGA	ref_5665_new	48	95	64	47	101	66	117	52	101	45
AGTAAGTTATTCACAC	ref_5665_new	10	23	9	20	22	10	21	7	35	15
TCCGACTGGTAAATGG	ref_5665_new	5	2	3	2	6	2	4	9	1	2
ATTCTTTCAAAGGTGG	ref_5665_new	28	58	27	26	39	23	35	24	55	26
TCATCTCCCGAACCAC	ref_5665_new	2	18	6	6	12	4	14	3	15	12
TAAATTGGCTTCGATC	alt_6024_new	33	58	35	32	76	34	59	31	77	25
CTAATTGGCGACAGGT	alt_6024_new	1	13	3	2	4	2	10	3	7	3
CATTACAGCCGTCATC	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TTTACGTGTTCTTAAC	alt_6024_new	7	19	12	8	16	3	20	10	24	3
ATCTAAGGCATCGGTC	alt_6024_new	57	123	77	53	137	62	119	61	159	56
TATGTTGGCACCGGAA	alt_6024_new	41	50	20	26	48	24	44	27	57	32
TCCTCCACGCTAGGGG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
CTAGTGTCAATCACGT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TCTCACTTCGCCTTAG	alt_6024_new	18	33	21	11	26	13	17	6	27	20
ATGTTTTGGGTTACAA	alt_6024_new	14	40	13	13	21	19	29	9	32	12
TGTTATATAACTAGAC	alt_6024_new	15	28	21	12	31	19	30	12	32	23
CACTTATATTAAGCAA	alt_6024_new	0	0	0	0	0	0	0	0	0	0
ATTCTTCTTATTATGG	alt_6024_new	11	16	15	16	23	17	20	9	16	10
GCGTTTCGACCTACCC	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GCAAGTAATTTCTCTC	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GTATTCTAACGTGAAG	alt_6024_new	7	6	5	5	22	8	10	3	6	6
CGATCCTAGAACTGAA	alt_6024_new	18	31	24	16	50	19	37	11	46	12
TCGGTCCGCAACTTAT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GTGGCAGATGATTGCG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GGCTATTGTCGTTTAC	alt_6024_new	16	42	27	18	40	24	33	16	47	7
TGTCCGTAAAACTCAA	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GGTTTAGTCACACTGA	alt_6024_new	12	11	7	3	13	3	11	4	10	6
CCTTTTGATCTTTTCG	alt_6024_new	12	17	8	10	23	11	10	6	17	8
TATGCTTCGCGGGGAG	alt_6024_new	8	8	7	4	16	4	4	3	10	6
AGGGAACACGTGGTCT	alt_6024_new	8	23	10	9	21	12	23	12	22	11
GTGGCGTTGAAACGGC	alt_6024_new	6	24	9	17	11	3	20	10	21	4
AGCCCCAGCATGAAAC	alt_6024_new	0	0	0	0	0	0	0	0	0	0
CGCGGGTTTCACATAT	alt_6024_new	2	6	15	7	15	7	10	6	8	6
TTCTTGGTGTGTTCCC	alt_6024_new	57	153	108	66	159	81	148	76	163	69
ATCGGGCGATCTTGTG	alt_6024_new	2	7	6	3	7	1	3	6	5	4
CCACATTTTTGGGATT	alt_6024_new	1	3	0	0	1	1	0	0	2	0
GAGCGATCTAATCCCG	alt_6024_new	14	40	13	17	24	15	23	16	32	9
TGAAGTCGTTTAGAGC	alt_6024_new	20	55	21	20	29	18	38	10	30	15
TATTATATTAATTATG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TTTCTACATCAAACCT	alt_6024_new	2	24	14	6	12	9	24	3	23	7
ACATTTTTTGCGGTCG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GGCCCTTTTGCGGAGT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TCTCAGGGACATAATG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TTGTTCCTTCTTATAT	alt_6024_new	28	44	29	18	53	26	66	24	58	25
TCTTGTCATGCGATTT	alt_6024_new	24	33	36	27	55	27	60	16	48	22
GGACCAATATACACGC	alt_6024_new	28	44	23	25	59	27	44	26	40	25
TGGTAGTAATTCCAGG	alt_6024_new	7	12	4	11	11	6	13	5	13	5
CGGACTATAACTGCAG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
CTAAGTGCTTCATACA	alt_6024_new	13	26	12	5	16	6	32	10	21	7
CGAGCGCAAGTTGGAG	alt_6024_new	1	7	7	6	11	2	12	0	4	3
GTTACGATACGTACCC	alt_6024_new	4	50	12	3	40	8	55	9	54	5
TTTTCAGCTTAAAGAT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GACGCCGTACGTTATA	alt_6024_new	6	9	15	6	26	4	13	7	17	10
GCGCCTACCCATCGGT	alt_6024_new	59	76	64	46	96	52	101	46	119	35
TTTCGGTGCGGCACCG	alt_6024_new	14	34	23	10	33	17	38	24	29	17
AATTACTAATAGTTCT	alt_6024_new	15	33	11	11	23	12	33	10	20	10
GGAGACACACATTTGT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GTGTGGAAGGGAGGCA	alt_6024_new	36	77	40	40	89	41	91	30	103	27
TCCATTATCGAACCTC	alt_6024_new	3	7	6	2	9	3	8	5	10	3
AGTCCTGAAATGTGAC	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TTTTGACGCCCATTGT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TAATCCAACGGTCGAT	alt_6024_new	3	8	3	4	7	4	9	6	12	5
TGTCCGCTAGAGGATA	alt_6024_new	14	35	19	23	44	17	30	28	47	12
ACGGTTTCCATTCGTT	alt_6024_new	24	52	30	17	53	21	40	19	45	30
ATGATATTAGTAGTTA	alt_6024_new	1	6	2	3	4	3	4	2	1	3
TTCGTGCATTGATGGA	alt_6024_new	2	1	3	0	6	2	3	2	1	5
GGGTCACAGATGGAAG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TGGGCGTCGCCGTCCG	alt_6024_new	1	4	0	1	3	1	2	0	2	1
TGATATCTCATGTGAT	alt_6024_new	21	44	28	6	38	21	39	21	48	12
CCGGGCCTATGAGTTA	alt_6024_new	9	25	8	11	25	12	26	10	23	13
GACACTACTTACCCAC	alt_6024_new	0	0	0	0	0	0	0	0	0	0
CCAGTGGTCTGGCCTA	alt_6024_new	8	73	6	7	84	5	74	8	73	11
TTTCGCTCGTTAAAAA	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TCTTCAGTTGCAGCTA	alt_6024_new	0	0	0	0	0	0	0	0	0	0
GATGCAGTCCAATCTC	alt_6024_new	6	11	6	7	6	7	12	5	11	2
TGTCTGACAGGTTAAC	alt_6024_new	13	31	23	11	30	12	39	16	25	9
TCAAATCGGCCATTCT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
AAAATTTTGCATTTTC	alt_6024_new	0	5	0	2	0	0	0	0	1	0
AGCGGACCTCGAGAGG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TTTTCTTCGACCAACG	alt_6024_new	0	0	0	0	0	0	0	0	0	0
TACGTTCTATTCCTTT	alt_6024_new	63	117	61	66	131	46	124	72	135	54
TGACAGAGCTTTTGTC	alt_6024_new	5	17	14	12	22	10	13	9	28	4
CGGACGTTATCTTGGG	alt_6024_new	9	18	14	12	12	9	27	7	31	13
GCTTTGGGAATGGCAG	alt_6024_new	20	60	39	27	35	32	46	28	50	27
CACGTATTATAGTAGT	alt_6024_new	14	10	3	5	9	10	8	4	10	5
ACAGGCTATTCTACCC	alt_6024_new	3	8	3	1	5	2	4	1	6	3
AATTCGCTAAATAAGT	alt_6024_new	0	0	0	0	0	0	0	0	0	0
ACAGAGGCCACTGGTC	alt_6024_new	39	104	66	42	126	50	122	42	98	49
CCGGCTTATATGAAAG	alt_6024_new	26	78	22	31	76	28	77	38	77	20
ACTTATGTTGACCAGA	alt_6024_new	30	54	29	28	66	27	47	28	66	22
ATCTATGACGGTTCTG	ref_5240_reverse	43	53	46	45	48	44	54	46	42	41
TGCCTCATCGTTAGGG	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTCCTGTGTAATT	ref_5240_reverse	6	8	9	11	9	7	11	2	5	6
CTTACACGGAAGACCT	ref_5240_reverse	73	67	63	60	62	60	71	61	63	66
AGATCTAACGCTAACG	ref_5240_reverse	20	26	38	27	25	27	20	23	37	31
AGGCCAGTCGTGCTGT	ref_5240_reverse	35	32	60	43	46	52	61	42	54	36
GTCCCGGGTGCCACTG	ref_5240_reverse	56	51	61	50	62	45	43	49	63	49
TGCTACGAGCCATTAC	ref_5240_reverse	311	324	316	268	339	278	307	261	318	258
GGCCTTGTTGGTGCCT	ref_5240_reverse	19	14	15	22	17	11	12	15	38	10
TTGTCCACCCAAACTC	ref_5240_reverse	23	22	41	34	25	36	25	27	35	27
CGCAGTCCGGAAAGAT	ref_5240_reverse	344	383	476	374	398	360	399	372	431	376
AATTGACGGATTCCGA	ref_5240_reverse	34	18	40	38	33	29	31	23	53	20
GTACTGCCCCGTTCCT	ref_5240_reverse	32	52	37	35	57	34	55	34	52	28
TCCGTTTTTGGACCTT	ref_5240_reverse	19	19	21	16	10	16	11	10	28	15
AGTTATCCTTCCGGAG	ref_5240_reverse	77	68	95	87	82	76	95	61	87	66
AACTCTCCAAGTGGTT	ref_5240_reverse	27	38	17	22	31	20	27	19	32	27
AAGGGAGCCGACATGT	ref_5240_reverse	2	2	9	2	5	1	5	5	7	3
TGCCATAGTACTGCAA	ref_5240_reverse	47	48	59	46	35	36	40	31	49	36
CTATGGTACCATCTTA	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
GACGTCTACAAATACT	ref_5240_reverse	12	21	29	23	24	26	27	14	31	28
TCATTACAGTTGTAGA	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCCCTGCGTTAC	ref_5240_reverse	21	10	13	8	13	13	18	9	16	11
ATCAACGGAGTACGAT	ref_5240_reverse	41	43	70	47	31	43	42	36	44	35
CAGGTGTACGTTGCGG	ref_5240_reverse	34	42	43	37	41	36	39	25	44	27
TTTTTCAGCCTCCACC	ref_5240_reverse	16	6	18	17	10	16	14	5	11	15
TTTCTGTCGTAAAGCA	ref_5240_reverse	12	7	11	11	2	8	10	8	8	7
GGTTTACTGGAAAGCT	ref_5240_reverse	58	48	83	49	66	56	72	55	61	54
TTTCTGCAATATGATA	ref_5240_reverse	84	105	148	96	94	87	121	113	100	85
GTTCATACGACTTTTT	ref_5240_reverse	12	9	14	16	18	11	12	10	16	19
GGTTTAAGTTAAATGT	ref_5240_reverse	324	262	353	315	310	294	297	304	340	266
GGGTTGAGGTATGACT	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
ATGATCTCTGTTTCAT	ref_5240_reverse	35	14	22	30	27	23	24	37	19	37
TGTTCGTTTAACTCTG	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
AGGGTTCCTCCACCCT	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
TGTTTCGTCCTACACA	ref_5240_reverse	7	9	18	19	12	16	14	15	12	13
CGGTAGCTTTTATCGG	ref_5240_reverse	35	33	46	24	31	19	34	31	21	24
ACATATCCTAGTTTGT	ref_5240_reverse	7	4	4	7	1	3	10	5	9	2
ATTGAGGGCGCTGGCT	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
GATCAAATGCTAGGGC	ref_5240_reverse	48	39	35	35	43	46	37	38	48	28
GGCCCTATCTTACCGG	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTGAACTCAAACT	ref_5240_reverse	36	30	46	36	57	33	46	28	38	33
GTTTCCCCACCGGCCC	ref_5240_reverse	27	26	23	22	16	13	12	17	11	17
ACATCTGGGTTGGTTA	ref_5240_reverse	37	30	39	36	54	32	35	35	38	32
CTCAGTTCTAGACATT	ref_5240_reverse	11	11	11	13	9	15	8	2	16	5
TGAGATGAACAACTTT	ref_5240_reverse	29	25	18	18	25	13	16	11	29	20
GATTATTACCAATATC	ref_5240_reverse	7	5	8	10	10	9	7	4	7	10
CACCTGCAACCACCTT	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
TCCAAACTGTGTAGAA	ref_5240_reverse	40	33	36	43	43	32	30	23	43	22
ATCCGTAAGACGATCT	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
CCGTATATATATACTA	ref_5240_reverse	27	32	46	35	20	41	42	33	30	28
TCGCCTTCGTAAAATA	ref_5240_reverse	110	88	141	109	122	93	104	103	97	84
AGGCCTCGTTGTTGGT	ref_5240_reverse	24	16	23	23	10	15	17	23	27	23
TAACTTCTTCACATCT	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
TAGATTCTGCCATGGA	ref_5240_reverse	32	37	67	56	35	40	57	44	62	59
AGAACCGGGATCATGG	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
ATCGCACGTCATGTTT	ref_5240_reverse	77	48	91	79	60	53	66	57	66	70
TGAATCTAGGTCACCA	ref_5240_reverse	6	3	2	3	4	4	3	2	10	2
CCGGTGATCTGTAGGT	ref_5240_reverse	10	30	16	7	19	6	18	9	33	17
CTCGGCACTGTTAAGT	ref_5240_reverse	17	67	17	17	60	14	58	16	65	13
CTGCGCCGTTGAATCA	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
GCTATAGATAGTGCCA	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGTCCGTTCTGTT	ref_5240_reverse	5	8	3	3	7	5	6	4	4	4
CGGTTGACGCGAGTGC	ref_5240_reverse	0	0	0	0	0	0	0	0	0	0
CATGTAATAGCCGGTC	ref_5240_reverse	3	6	6	5	5	1	6	3	5	6
ATGTGCAGAGTAGAAA	ref_5240_reverse	69	77	76	72	98	52	91	70	73	83
CCCTTCGCCTTTGCTT	ref_5240_reverse	32	49	48	53	53	40	52	39	65	30
GCCTCGGTCGATCTTC	ref_5240_reverse	29	30	43	46	36	33	42	42	37	45
TTTGATCTCCTCTGGT	ref_5240_reverse	9	3	4	7	8	6	5	2	4	4
AGCGTATTAATCTTGG	ref_5240_reverse	9	9	13	11	13	11	9	10	7	7
CCTTCTGGGCCCCCTC	ref_5240_reverse	70	64	76	67	60	75	60	74	65	65
TAGACCAGTCCCAAGT	alt_4003_fdr	7	23	5	6	6	3	16	12	18	4
ATTTAGTGCACCTTAT	alt_4003_fdr	3	2	5	2	2	1	4	2	1	3
ACGGCCATCGCCGCCA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCTTACTCTACCT	alt_4003_fdr	2	3	0	0	2	1	6	2	5	0
ACTGGCTTCCCTTCGA	alt_4003_fdr	3	5	6	4	10	5	4	2	4	8
CCTGGTTAGAATTCCT	alt_4003_fdr	31	38	34	31	34	19	41	26	40	30
AAAGCAGTCTTATCTC	alt_4003_fdr	27	68	48	42	50	39	53	38	80	56
ACTTACACACTGAATG	alt_4003_fdr	9	17	10	6	19	6	21	4	9	11
TTCGTCAACTTTCCAA	alt_4003_fdr	2	2	0	1	1	2	1	2	2	2
CAAGGCTTTTGTGTGG	alt_4003_fdr	21	18	19	20	34	17	18	13	43	18
GGATTGTAGCCGAAAT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTGAAACCCTCACGAG	alt_4003_fdr	74	96	78	74	92	90	95	68	114	53
GGAGCCAATGCTATTT	alt_4003_fdr	24	35	47	25	44	29	54	29	37	34
GTCATTTGTATGTAGC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTAATTTTAAGGAAGT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
ATAAATTCGTTATTCG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCTCGTAGCGCCG	alt_4003_fdr	8	7	12	9	5	10	18	2	16	13
TTGTCTATAATATTCT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
AGTCTGTACTTGGTCA	alt_4003_fdr	79	99	81	65	115	71	136	67	119	69
CTCAGGACTTAGCCTG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAATGTTGAAACG	alt_4003_fdr	0	3	0	0	1	1	1	1	3	2
TTCCCCGCCGTTGATA	alt_4003_fdr	1	69	4	4	71	4	66	4	71	1
CTGATCTATGATGGAG	alt_4003_fdr	5	2	3	2	5	2	3	4	8	7
AGACCAGTCCCCGCCA	alt_4003_fdr	54	59	54	38	67	39	44	41	65	38
ACGAATCGGTGAAAGG	alt_4003_fdr	32	44	30	25	41	22	19	19	34	18
CTCTCTTAGTTGCCTT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGTTCTCTTGCTG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGCCCAAACTGCGGTC	alt_4003_fdr	11	10	12	12	21	5	12	11	20	13
CAAAAACTCCCCTAGC	alt_4003_fdr	0	6	2	0	6	1	12	0	14	1
ACGGAGTCTCCTTGGC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTAACTACCGATTATC	alt_4003_fdr	32	51	33	29	72	27	58	28	66	33
GACCGCAGCAGGTTCT	alt_4003_fdr	22	43	25	23	40	38	49	29	29	31
GATCCCATATTTTTAG	alt_4003_fdr	41	35	43	39	48	35	47	37	58	33
GCGGAAACCGGGAAAC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CACCTTACATCCTTCA	alt_4003_fdr	19	26	19	20	28	19	29	15	29	10
TGCACTAGAATTCTTA	alt_4003_fdr	20	33	27	24	34	23	39	23	39	19
TAGTCGATCTATGAGT	alt_4003_fdr	19	31	24	13	34	13	21	27	33	17
CTGCCGCCATGTTGGG	alt_4003_fdr	71	72	74	54	52	46	51	73	45	52
TTGTCGGTTTTTTTAT	alt_4003_fdr	22	36	31	25	37	22	33	27	33	25
ATAGTTTACCCGTAGT	alt_4003_fdr	1	5	1	2	3	1	3	1	1	3
TATGCTTTTTTCTCAA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTCAGGGTACGCG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GAATTACGGCTAGTGT	alt_4003_fdr	6	12	5	2	8	4	6	7	9	5
ACAATCAACAATCTAG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CTCGGCACATTTCTCA	alt_4003_fdr	17	15	8	17	18	14	10	9	28	8
TAATGAAATTTTCGCT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGTATGTTACGCA	alt_4003_fdr	2	6	3	6	8	2	7	7	5	4
ATGCTCACAATGACGG	alt_4003_fdr	12	11	13	7	15	10	15	7	13	7
GTTGTTACCCGACCCT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCCGATTCGGGCATGA	alt_4003_fdr	72	105	84	89	104	81	120	65	134	74
GTCGGTTTCCGGAATT	alt_4003_fdr	2	12	12	5	12	6	12	5	12	4
TGATAGCGGGGTTGCC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTATGCACGTTGTATC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTCACCATAGCCTAGC	alt_4003_fdr	1	4	0	2	4	0	2	1	2	1
AAGCTTAGGGTAATTT	alt_4003_fdr	9	16	21	13	12	10	11	11	20	11
GATTACGCTCGTCTGC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCCTAAATACTTCCGC	alt_4003_fdr	68	76	64	60	81	53	88	43	102	40
AGGTCCCGGGTCGTCA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTTGCATTAGTGA	alt_4003_fdr	25	52	38	27	67	27	53	28	62	18
ACTTATCTGCTTCATG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CCTAGTGGGCCCTTGC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCCAATGTCCTCTAGC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCCACCGTTGTTGTCG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCACGTTGTTGGCCAA	alt_4003_fdr	1	5	7	0	4	3	9	4	5	1
TGTTGTGGATTCACAG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGGACTCTCTATC	alt_4003_fdr	17	39	38	28	47	27	37	24	49	29
CAATCATCAAGGATAC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TAGAGGCTTCTGCTTG	alt_4003_fdr	12	28	33	18	33	16	28	17	35	21
TCCTAATGAAATGATT	alt_4003_fdr	34	60	37	33	62	41	55	35	74	28
ATAGCAAGTACTCGCT	alt_4003_fdr	64	88	47	65	102	62	104	74	96	69
GGAAAGTCCCATCCAT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGTACTTGCACTGGAG	alt_4003_fdr	9	20	12	8	23	9	25	14	25	8
TATTGATTATGCGAGA	alt_4003_fdr	2	8	10	4	3	4	6	8	10	2
CTATTGTGTTAGTTTT	alt_4003_fdr	10	10	11	5	15	9	14	4	15	9
TAGATGGTCATTTATG	alt_4003_fdr	1	2	3	3	9	2	3	5	8	3
CATGACCGGATTAACC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CAAGCGCAAGCCGGCT	alt_4003_fdr	7	10	6	6	10	4	8	6	1	3
TTTAAGTTGGGCTTAC	alt_4003_fdr	12	27	15	9	24	10	17	11	14	8
CCAGATGCGGTGTTGT	alt_4003_fdr	12	12	17	6	21	8	16	13	25	13
AGCTCAGTTCTTAGGT	alt_4003_fdr	8	9	11	5	9	4	14	8	12	11
GGAATCACCACCTATT	alt_4003_fdr	7	14	8	10	11	9	22	9	15	10
TCCCCTTTTCGTAGTA	alt_4003_fdr	1	9	5	5	9	4	11	2	12	2
GCCCCTCGGCGTTGGG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTCTGACAGGACTAGC	alt_4003_fdr	13	11	14	10	18	9	21	7	22	15
CGGTCTTGTCGACTAA	alt_4003_fdr	3	7	1	1	1	4	5	1	6	2
TAACCTAGGGTTTGGC	alt_4003_fdr	0	7	6	6	6	3	4	2	2	4
TCCTGGGCATGTCGTC	alt_4003_fdr	7	4	11	7	9	5	12	6	12	5
CTAGTGCTCCCGCACC	alt_4003_fdr	31	33	34	27	43	28	34	23	35	10
GGTTAGCTTAATTGTT	alt_4003_fdr	8	14	18	9	8	22	12	13	16	6
TAATGGAATAACTACT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTACACTATGTGCGCA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCTACAACAAGAT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGGAACGTATTGG	alt_4003_fdr	24	32	29	24	39	27	62	40	49	33
CTCGGAGCACTGTATG	alt_4003_fdr	14	24	20	18	33	19	37	22	38	23
CAGTGAGGTTCCTGAT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTAACATAATGGA	alt_4003_fdr	173	254	188	169	246	190	253	157	259	160
ATTCTTATAGAATCGC	alt_4003_fdr	15	18	24	17	24	18	20	19	24	13
CTGTTATAGGAAGTGT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
ACTCATTCCATCTATT	alt_4003_fdr	29	66	38	24	54	36	72	41	72	28
CTGCACGGAGTCACGA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGCCAGCTATTGATTT	alt_4003_fdr	4	13	5	3	10	1	8	1	10	5
ATTGATTGACAGGAGC	alt_4003_fdr	110	190	147	132	196	122	212	147	213	108
TGCTTTTTCATGGATA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGCAAGGGTAGGCGAT	alt_4003_fdr	6	15	8	6	19	13	9	11	9	5
AACGTAAGGGTTGATA	alt_4003_fdr	26	32	40	19	39	22	37	24	35	16
CAGCATTTCCGACTGT	alt_4003_fdr	58	128	75	80	136	65	151	50	120	53
GCTAATATGATCCGTT	alt_4003_fdr	3	3	2	3	2	0	6	3	6	2
ATCTCCGGTTTAACAC	alt_4003_fdr	96	171	102	102	155	88	187	79	171	69
ATACTTATATAGTCTT	alt_4003_fdr	3	7	0	1	7	3	3	3	6	5
TATGCACTGCAAACCC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GCTAATTTCGTCTAGG	alt_4003_fdr	5	2	4	3	3	2	5	3	5	1
CTGATACTGCGCCGTT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTTTCGGATTTG	alt_4003_fdr	8	30	22	12	33	18	28	8	25	17
CTAAAGGCGCGGATAA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TAGACCCTAGCCGTGC	alt_4003_fdr	7	18	12	7	28	9	22	8	27	5
AAACTTTAAACTCACG	alt_4003_fdr	9	7	12	6	3	5	6	10	12	5
TTTATCAGTTTCGATA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CTCTTAAACTTCACAG	alt_4003_fdr	24	21	15	14	35	10	22	13	41	11
TTGGAAGTAAATTAAA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTATTCAATCTCTAGA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGATCGATATGCT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTGATACCCCGTTACC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
ATAGCCGCTCTTGGTA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TATTGGGCTTTCAGTC	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTTAGTCTTAAAT	alt_4003_fdr	9	4	5	2	7	3	8	4	7	7
CTATAGTGGCAAGGAT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTGCACGGATCACAAC	alt_4003_fdr	23	29	30	22	34	27	33	24	40	14
GACACGGGTTTATAAT	alt_4003_fdr	6	7	6	7	4	3	2	7	10	5
CACACGCAAACAACTG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTACGCTTCACGTCAG	alt_4003_fdr	22	25	29	29	35	22	43	20	39	27
GTATCCTGCAGCTTCC	alt_4003_fdr	12	14	17	12	13	18	17	13	17	11
TTGCACATACTTCGCG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TTGTACTTGTATCATT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CAATATTAATGTCTGA	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGTAACGATTTCCGAC	alt_4003_fdr	31	46	32	36	33	28	40	22	47	36
CGTCCCTCGTCAGTGT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
CGAGAGGGAGACACTG	alt_4003_fdr	8	8	6	6	4	3	7	6	4	1
TTGCAGTCCTTGTCCT	alt_4003_fdr	34	45	37	19	44	23	48	18	35	26
CACATTAGAGGATTCG	alt_4003_fdr	1	3	1	0	4	1	2	0	6	0
CGTGTGTTGCCTCTGC	alt_4003_fdr	29	55	26	25	45	28	48	37	41	16
AGCGTGGCAGGTGGCT	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
TACCCCTTAGATTTTT	alt_4003_fdr	44	99	81	59	97	66	114	50	103	41
GCCCGCCTTCCCGTTC	alt_4003_fdr	7	10	11	5	12	4	11	11	10	8
GACCATTAGAACACGG	alt_4003_fdr	0	0	0	0	0	0	0	0	0	0
AATCGTCTCCGGTTCG	alt_5633_new	35	49	50	38	50	33	52	39	43	36
GAAGAGTTGTAATGTA	alt_5633_new	247	312	369	246	330	246	371	261	316	231
AAACCTGCACTAGCGG	alt_5633_new	0	0	0	0	0	0	0	0	0	0
CGTTTTTTCATCTCAT	alt_5633_new	32	33	43	39	31	35	36	36	36	24
TTCATTTAGGAGTTAT	alt_5633_new	0	0	0	0	0	0	0	0	0	0
ATCCAGCTTCATACTT	alt_5633_new	75	71	124	61	76	58	106	63	98	50
TGCCAATCCACTCCAA	alt_5633_new	56	57	60	48	64	47	44	50	57	48
CTTTCGGGACGACTAT	alt_5633_new	0	0	0	0	0	0	0	0	0	0
AGAGGACTCAGGGCGA	alt_5633_new	21	21	28	29	27	24	25	25	26	16
TCAGTGGATTGACGAG	alt_5633_new	26	29	40	39	43	29	42	27	43	28
CAAGTTGGTAAGACTA	alt_5633_new	86	93	83	106	103	93	110	87	100	69
GCTTCTATCACGTTGA	alt_5633_new	3	4	3	3	9	8	8	3	7	2
AAGGCTCTCGACGGCA	alt_5633_new	45	55	54	44	43	34	51	41	55	30
TCTTTACTTTTCCCGG	alt_5633_new	0	0	0	0	0	0	0	0	0	0
GCATTGCGATGATACC	alt_5633_new	6	8	8	5	8	5	15	8	12	2
CTCCGAGTGTCTACTC	alt_5633_new	0	0	0	0	0	0	0	0	0	0
CCGTCGCCCCTGGTCC	alt_5633_new	0	0	0	0	0	0	0	0	0	0
CCGGAGACTTGACGTA	alt_5633_new	0	0	0	0	0	0	0	0	0	0
AACAGTTGGATGCTCA	alt_5633_new	20	29	34	27	34	28	21	31	33	34
TCGTCGCGATAGATTG	alt_5633_new	79	126	103	82	109	77	96	88	128	71
TCGATAAATATTTTTG	alt_5633_new	11	13	9	16	18	13	13	7	17	16
AGTGGCTGTTGAGTGA	alt_5633_new	0	0	0	0	0	0	0	0	0	0
TTGGGATTAAACTGGT	alt_5633_new	0	0	0	0	0	0	0	0	0	0
TGTTTTGACTATGAAG	alt_5633_new	6	11	12	4	14	14	9	6	10	7
ATTCTGCTTGATCGCA	alt_5633_new	21	12	30	17	28	14	21	15	23	25
AGTGCCGTTGACTACT	alt_5633_new	0	0	0	0	0	0	0	0	0	0
TGAACTTCGATATTGC	alt_5633_new	41	45	53	39	61	61	62	36	60	43
TTACTCTAAGCCCTGC	alt_5633_new	8	15	13	13	16	9	11	13	14	14
CCAAGGCGTCCGGGTC	alt_5633_new	35	53	56	44	37	29	49	23	56	40
CCACAGTCGGCACTAC	alt_5633_new	20	21	16	25	24	14	34	7	22	17
CCCCCTTGTTGTATCC	ref_5633_new	65	59	90	76	61	52	62	50	65	45
AACTTAATATCACTAT	alt_5633_new	16	26	26	23	35	21	20	24	31	20
GCTATGTCTGCTCGGG	alt_5633_new	18	14	28	12	22	14	11	10	22	9
TCTTCTTTCCTCTTCG	alt_5633_new	38	31	60	42	39	41	56	53	53	45
GCTCGTTTCCCTCTTG	alt_5633_new	0	0	0	0	0	0	0	0	0	0
AGCTATGAAGGAATAG	alt_5633_new	0	0	0	0	0	0	0	0	0	0
TGCGCCGGATGACAGA	alt_5633_new	40	64	84	65	60	60	71	60	70	45
GAGTCTCCTTCTAGTC	alt_5633_new	57	76	86	56	62	47	66	42	63	47
GACCGTTCATTCTCTA	alt_5633_new	51	69	68	62	92	65	92	78	65	46
GTAGGGGCGCAGGCGC	alt_5633_new	17	13	16	16	19	18	26	15	23	14
GGGTCCCATTCCTCAC	alt_5633_new	30	30	41	42	27	31	46	31	40	34
GGATCACCTCTTCAGC	alt_5633_new	0	0	0	0	0	0	0	0	0	0
GAGTTATGGCCATCCA	alt_5633_new	24	30	28	29	27	16	20	15	15	13
TTTTGGTGGCATTTTA	alt_5633_new	0	0	0	0	0	0	0	0	0	0
CTAGCGAAGATGCTAT	alt_5633_new	0	0	0	0	0	0	0	0	0	0
AGGGATAATTTCGTTT	alt_5633_new	54	69	70	55	58	62	83	54	70	64
GCCAACGCCGATTCCT	alt_5633_new	4	1	4	2	5	5	2	3	3	3
GCTTAGCTCGGCTCCA	ref_5633_new	42	47	38	37	40	43	45	40	47	47
CCATGTTCTCCTACCG	alt_5633_new	122	165	194	161	179	124	160	135	158	147
ATATAATTATGTGTGT	alt_5633_new	24	32	26	24	24	28	18	18	23	16
TCGGTAAGTTATGCGC	alt_5633_new	27	19	27	35	30	31	38	33	20	33
GTTTAGATGTTTCTTC	alt_5633_new	107	118	119	111	148	90	125	98	113	100
CCGTTGAGTACCTGCA	alt_5633_new	31	41	28	22	44	15	43	27	45	27
CTGGTTTTTTATGTCT	alt_5633_new	25	25	21	24	29	22	29	20	33	23
ATTCCATTCGGTTAAT	alt_5633_new	16	18	16	10	15	10	21	10	14	9
TGGCACTCAGGTTCGC	alt_5633_new	1	0	2	3	1	1	6	0	3	2
TTTGATTGATCAAGGA	alt_5633_new	0	0	0	0	0	0	0	0	0	0
CTGGCTTTCGCCGTAC	alt_5633_new	4	13	5	5	7	9	8	3	14	5
TAGGGGAGAATACGAC	alt_5633_new	0	0	0	0	0	0	0	0	0	0
CCTGTCTGGCTGTTTT	alt_5633_new	16	16	22	15	16	10	17	12	22	15
AGGAAACCTCGTTACC	alt_5633_new	3	6	6	7	3	2	5	7	5	4
CTGCAGACCCGGCTTT	alt_5633_new	15	31	17	22	19	16	23	18	30	14
GTGCCGGTACTGGGTC	alt_5633_new	9	18	14	14	22	10	23	10	13	16
TTAATGTTATGTAAGG	alt_5633_new	35	30	54	50	45	31	48	36	54	29
TTTTTAGTCTACTTTC	ref_4170_reverse	176	278	212	166	262	145	292	140	276	147
TGGCCCAGTGGCTAGT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATTGTTTAGAAC	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTGCATTCAATCT	ref_4170_reverse	3	28	6	7	35	5	32	6	46	4
ATGGGATACTTTACTC	ref_4170_reverse	1	0	2	3	0	2	2	1	4	1
TCCGGGATGACAGGCT	ref_4170_reverse	93	92	85	82	99	77	85	83	107	69
AGGTAACTCTTGGGCC	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGGGACGCATGGG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTGGCAGTGTTG	ref_4170_reverse	16	37	22	33	33	21	31	19	57	18
TTTGCGTTTATAGTAG	ref_4170_reverse	124	168	155	118	187	142	255	123	210	94
TACTGCGTATGGCGGG	ref_4170_reverse	34	43	67	55	37	39	51	42	60	28
CGTCATTCGCAATAGG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TCGACCATTCGACGGT	ref_4170_reverse	7	31	25	15	28	11	42	9	31	18
TTTACTCCGCTATCCA	ref_4170_reverse	38	37	57	27	49	25	50	22	49	18
CGATGTGCCGCTACCA	ref_4170_reverse	51	62	75	58	72	56	82	58	95	40
ATTCGGCCGCCAAGGG	ref_4170_reverse	28	34	32	21	19	24	39	31	24	24
TAAAGCGTTCATATGT	ref_4170_reverse	30	51	41	36	50	35	56	35	43	41
ATGCAATGTTTTTTCG	ref_4170_reverse	8	12	12	7	12	4	14	5	12	7
GGCCTCAGATCCTACA	ref_4170_reverse	53	97	67	66	82	49	90	51	99	47
ATCTTGGCAGTGGCGT	ref_4170_reverse	12	19	9	10	15	4	25	14	12	10
TCTTTTTTTATCGAGG	ref_4170_reverse	55	92	65	47	86	48	85	57	74	50
GTCCCTCCGAAACTCT	ref_4170_reverse	22	31	32	24	46	20	46	13	30	14
TAGGAGCACTTTGCCG	alt_4170_reverse	25	31	24	27	25	19	31	25	34	20
CCCTTCTCCATTGTCT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CCATTTCGGTAATCAA	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
AATCGTATACCTCGGG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CTCAAAATCGTCACCG	ref_4170_reverse	35	41	48	15	60	27	41	37	46	38
CCTGGCCTACCTCGCT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TTGATTTTATGCCGCT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
GCTACAAGGTAGTTTT	ref_4170_reverse	25	38	20	22	26	11	26	25	41	17
ATGCCAAGTCTATTTT	ref_4170_reverse	4	5	13	3	7	1	5	7	11	7
ACTGTTTCCACAATAG	ref_4170_reverse	17	20	19	10	21	15	29	8	19	15
AGTAACGCTTAATATG	ref_4170_reverse	69	128	114	89	120	80	136	74	123	73
TGAGCGTCCATGTGGT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TGTCGCGCTCCCGTGC	ref_4170_reverse	32	26	19	30	33	37	34	23	40	22
TGTTTCATTCAGCCGG	ref_4170_reverse	32	50	41	23	54	32	45	27	45	33
CGTGTACGCATAAGGG	ref_4170_reverse	154	211	174	164	208	136	232	143	245	123
GCGGTTTTTGTATCTT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TAAACTGGTTGTATCA	ref_4170_reverse	25	42	30	24	41	26	38	20	36	20
GGAACGCGGTGGTTCG	ref_4170_reverse	73	103	80	73	96	70	104	68	115	51
AATAGCCGATGTCTAT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGCCCCTGCAATT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGTGGAGATGCCT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
GCTATGGCCTAGTTTT	ref_4170_reverse	18	31	17	19	25	22	35	26	39	25
AGTTCTTTTAACTGAG	ref_4170_reverse	21	46	15	20	29	16	41	21	28	23
GCAATAAAGATATGTC	ref_4170_reverse	44	37	56	30	40	36	35	35	47	29
TCCTCCACAATTGTTA	ref_4170_reverse	18	17	20	32	30	21	27	27	37	23
ATATCCTGAACCCGTC	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
GTAGGGAACTGGCGTC	ref_4170_reverse	40	55	37	43	60	28	51	24	52	23
ACTAAAAGCGACTACC	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTTGTTGCTTTCA	ref_4170_reverse	40	34	35	26	40	24	29	29	39	27
GCTGGCCCCGAAGGAT	ref_4170_reverse	14	27	18	15	27	14	27	24	23	8
TATATTTGATACGACC	alt_4170_reverse	2	12	1	6	10	10	9	3	11	5
CCCTGCAATCACTCCG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGTCAACGTCCGT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGTCCAATAGCAG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
GATTCTAGATATTGGT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
AGAGCCCATAATGTTG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCATCGGACTGTC	ref_4170_reverse	9	12	5	5	6	8	13	7	18	9
AGATGCAGAGAGGACC	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CGTGACACTTCGCGGT	ref_4170_reverse	10	7	8	11	10	15	8	7	11	2
GCCGGTTCTTTTAATT	ref_4170_reverse	3	14	5	11	5	9	6	10	16	11
TCTCCGTCTGTTCTGT	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
CGCCAGTTACGCCCCG	ref_4170_reverse	23	31	19	9	31	8	28	12	21	12
GCTGCCGTTAAGGGCG	ref_4170_reverse	28	42	41	33	41	32	46	29	35	31
CTGCCCGTTCAGACCC	ref_4170_reverse	6	10	9	6	9	9	11	11	11	2
CGGTCCATCAGGATTA	ref_4170_reverse	1	1	3	1	2	0	3	1	3	1
TCCAGCTCATCGTGTT	ref_4170_reverse	9	19	12	16	17	12	14	10	17	12
GTCTTTTTTTGAGTCA	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
AGGGCCTCCCTTCGTT	ref_4170_reverse	30	48	32	25	43	19	33	24	45	23
GTTCTTCCTTTCTACG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
GGTGCTCCTTCAGCGG	alt_4170_reverse	95	114	118	112	122	90	130	94	153	108
TCTACAGTTAAACTTG	ref_4170_reverse	8	18	20	9	23	13	25	7	29	15
CCTGCTTAATCAGATC	ref_4170_reverse	27	28	33	25	25	24	29	24	45	20
CCACGTCGCTACGGAC	ref_4170_reverse	6	31	7	10	17	8	29	9	23	7
TTTTAGTCCCCCATGG	ref_4170_reverse	86	115	80	92	109	78	135	78	130	65
CGCCTCTATTATTCTG	ref_4170_reverse	14	40	23	22	37	18	33	14	42	23
GACGTCTCAATATACG	ref_4170_reverse	0	0	0	0	0	0	0	0	0	0
TAATTTGAGCCAAATT	ref_4170_reverse	38	80	60	54	83	40	72	50	92	44
TCTACTCCCCATTTGT	ref_4170_reverse	0	26	1	0	20	2	22	2	31	2
ACCCAGCTCTTGGCGA	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GTGAACGTGTACCTTC	ref_2027_upstream	15	9	20	15	16	18	6	13	16	12
TTTTAACATTGAGGCT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GTAGCATGCGTTCGTC	ref_2027_upstream	34	33	31	28	35	25	34	25	41	33
GGTCCATTAATTCGTC	ref_2027_upstream	10	23	19	12	12	12	20	12	20	12
TTTAGTTTCCTTTTCT	ref_2027_upstream	84	60	84	87	48	77	47	71	72	60
GGTACCACTGTGTAAC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GTGATGAGAGAGCGGT	ref_2027_upstream	29	19	31	34	17	25	18	28	31	20
GTATGAAAGCAACGAT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
AAACTCTGCATATAAC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TCTGGAATGCGCGGCC	ref_2027_upstream	154	121	160	146	122	150	100	121	146	129
AATATTTATGGGTGTC	ref_2027_upstream	5	2	5	1	3	2	4	9	6	6
TTATCTGGTTCACAAT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTTAACTTGCGG	ref_2027_upstream	28	17	18	30	17	26	31	20	33	24
TGTCCGCGGACGGGCA	ref_2027_upstream	71	66	81	69	59	68	59	54	36	45
AGAAGATGTCGTTACT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
ATTACACCCATTTTGG	ref_2027_upstream	84	63	104	70	68	84	78	61	73	59
TCCGGCCTTTGGAAGA	ref_2027_upstream	61	93	82	60	93	64	86	73	99	46
ATGCGCTAGCCCCGCC	ref_2027_upstream	20	34	41	23	36	19	20	40	28	21
TTTTTCCGGGGTATTG	ref_2027_upstream	86	47	81	69	60	63	51	70	52	54
CTGTCACCATCTCTGT	ref_2027_upstream	18	13	20	15	18	18	11	19	14	13
GATCCATGTTCTTTGT	ref_2027_upstream	6	1	11	5	4	10	1	1	6	4
GCATGAGCTACGCTTG	ref_2027_upstream	115	124	137	117	124	102	125	80	122	115
CGACCTTGGACAGCTT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTAGGTTATTTG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TACCTGCTATTCGTCG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGTGAGTCGCAC	ref_2027_upstream	20	15	24	19	20	15	22	18	26	21
CAGCAGGAGTAACGCT	ref_2027_upstream	1	5	9	8	3	3	5	4	3	5
CTGTACGAGTGTATAA	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGTAGCTGAGGTT	ref_2027_upstream	101	81	106	113	70	96	72	72	64	79
GGATATATTCAGCTAG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GTGATCCCCATTTACA	ref_2027_upstream	61	38	67	52	35	50	51	59	50	36
TGAAAACTTTACGTGT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CTCATGGTCACTTTTA	ref_2027_upstream	5	5	6	4	1	5	2	5	4	1
AGTGCGTTTAACACGC	ref_2027_upstream	66	39	51	56	37	49	56	57	57	52
GTATCGGGTGGTCTAA	ref_2027_upstream	54	54	71	64	49	70	33	56	57	65
GAAATACAAAAGGCCG	ref_2027_upstream	46	43	61	62	31	47	41	51	62	44
TGGTCTTGTAATCCCC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
AACTTGGACTGTAATT	ref_2027_upstream	89	66	88	123	56	89	82	66	77	76
TGTAGGGAGGCTTCGG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TTCGCCAACCTATATC	ref_2027_upstream	17	15	22	19	12	18	23	14	27	24
CGACAGAACAGTTCTT	ref_2027_upstream	45	55	79	54	38	64	44	58	55	37
GTCGTGGGGTGATTGA	ref_2027_upstream	34	33	44	31	33	39	26	42	36	34
ATAGTATTGAACTTAT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
AAGCCTTGAAAGCTCT	ref_2027_upstream	109	71	116	92	100	122	99	86	107	98
ATCGCCTCCGTCACGA	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CGCAAATTGTCAAAAA	ref_2027_upstream	32	25	44	33	24	32	14	26	17	26
TGCCGAAAAGGCTCAG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TCGCGGTTCGTGGTAA	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGTCATCTAGAAC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GACCTGTTGTCTTGCT	ref_2027_upstream	28	23	43	35	34	31	37	37	22	29
GTCGTAGTGACTCACT	ref_2027_upstream	30	21	28	22	19	27	21	24	22	18
AAGTGTCATTAATATT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TTTCAAGGGGAGGCAT	ref_2027_upstream	41	38	50	39	30	81	31	48	40	30
ATATTGTTGGAGTAAA	ref_2027_upstream	71	65	80	56	51	64	34	65	58	58
AAAGTACCTAGTGGAA	ref_2027_upstream	30	28	30	26	13	18	27	28	32	31
CGTACATCTTTCTTAA	ref_2027_upstream	26	16	24	26	14	32	27	24	16	13
TAGTGGCGGGGTTCTT	ref_2027_upstream	52	28	32	35	23	41	24	29	40	33
TCTCAGTACTGATCTC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCATTCCTGCCAG	ref_2027_upstream	15	16	32	15	17	21	16	19	18	17
CGGCTTTCAATAGAAA	ref_2027_upstream	10	15	14	8	11	12	7	6	4	5
TCGTTCTTGGGCCGCC	ref_2027_upstream	59	52	71	66	44	56	37	59	47	62
GTCTTTCCTAGTTCGT	ref_2027_upstream	15	15	21	31	22	23	17	17	23	11
GAGGAGATATCTGACC	ref_2027_upstream	233	150	264	191	140	196	167	196	161	212
TTAAAAGCGCGTATGG	ref_2027_upstream	33	18	42	20	20	31	23	35	16	23
AAAGTAGTTTTTAGCG	ref_2027_upstream	68	74	79	60	45	60	44	58	60	44
GCGTCTGCGGGTGGGG	ref_2027_upstream	117	69	117	112	93	83	85	101	84	91
CGACAGCGGTTGTTCC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CTACTCTCTCGTAGTC	ref_2027_upstream	23	28	37	20	30	29	23	24	25	21
CTTGATTAGCAGCTAG	ref_2027_upstream	43	37	74	45	58	45	53	34	45	34
ACTTAATGTTACTCTG	ref_2027_upstream	7	1	3	3	3	1	3	1	0	0
TCGTGACATTCCCTTT	ref_2027_upstream	102	70	93	96	85	100	90	77	82	93
AAAGAAGTTGTGCGGG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTCCTTAACTTCG	ref_2027_upstream	78	40	84	67	66	59	49	72	65	41
ATTTCAGACTATCCGT	ref_2027_upstream	0	0	1	2	2	2	2	1	0	1
TACCGAGGGCAGTTCG	ref_2027_upstream	24	18	22	22	16	19	17	25	9	21
ATCGTAAGTATTTGCG	ref_2027_upstream	8	5	10	2	4	5	6	4	9	7
TTATATTATGGGCAGG	ref_2027_upstream	47	44	68	51	33	49	56	39	48	59
TAGAAGAGTTGGCAAC	ref_2027_upstream	44	34	62	49	39	48	39	48	59	47
AGGTTTTTCGAATTGA	ref_2027_upstream	50	40	66	54	31	40	32	46	45	50
AGTGTTGGGACTGTCC	ref_2027_upstream	63	51	51	54	42	39	46	45	49	47
GAAGCATTTATTCCTG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CGATCTAGCCTCCCTC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	1
TAATTGGTATAGTCTG	ref_2027_upstream	15	15	17	17	7	5	13	16	14	15
AGTCATTTTAAGACCT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCTTTTTTGCCAG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTGATCCCCCCTG	ref_2027_upstream	42	31	59	37	37	35	27	29	42	35
CCCGTTTAGCACGAAT	ref_2027_upstream	25	22	31	38	22	17	19	26	32	23
CAGATTCTGTTCGTTA	ref_2027_upstream	16	22	37	20	26	26	17	16	25	25
GTGGAACTGGTGGGGG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GATGCGCCAATCCGGG	ref_2027_upstream	46	35	57	36	29	35	43	58	40	54
GTGTCGTAGTATCTAT	ref_2027_upstream	42	31	45	33	28	35	22	37	32	45
ATTATAACTACATATA	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCAATGTTGTTAC	ref_2027_upstream	88	134	121	112	133	96	132	89	124	92
CTTCTAAGGCCTATTT	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GATACATATCAACACA	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCTACTTAAGTA	ref_2027_upstream	4	7	7	8	9	9	12	6	5	9
CAGTCAGTATAGCTCT	ref_2027_upstream	8	9	10	7	6	10	6	5	7	1
GCAATGGTAATGTCCT	ref_2027_upstream	30	27	43	32	34	29	27	34	38	34
GGGAACTCGTGCCAGC	ref_2027_upstream	34	26	34	27	37	29	30	30	34	34
TACCTGTCATACCAAG	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CTCACAGTCTTCATAA	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
GGATGTTACCAAGGGC	ref_2027_upstream	3	2	4	8	1	3	4	1	2	7
GTATCCATAATTGATT	ref_2027_upstream	1	0	3	3	2	0	0	2	3	0
CGCATCCCCCGTTGCT	ref_2027_upstream	6	16	5	7	16	6	20	6	18	5
TAGTTCTGGCTATCAA	ref_2027_upstream	45	43	53	48	47	39	43	32	47	33
GCCCAGCCTCGGTCTG	ref_2027_upstream	83	112	153	106	108	120	91	119	134	113
TTGCCGTTAACAGTTC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
CTACGGCAACAGGCAC	ref_2027_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGAATATGCGAC	ref_2027_upstream	20	10	16	17	20	17	6	14	17	8
GACCCCGGTAACAGTG	ref_2027_upstream	24	35	25	19	30	30	26	27	41	27
GGGGGAAAACTAATAT	ref_2027_upstream	45	28	55	55	29	57	30	46	30	60
ATGGAGTGGTAGTGGC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
ATACATCCGCCCGTTG	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
CATTAGTCTTGGCACG	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
GATGCCGTGGTTTGGA	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
TGTAAATTTACCCGCA	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
ACGTTGCTTCGAGTTA	alt_1186_missing	16	28	27	24	23	11	39	8	20	11
TACATAACACCCTTAA	alt_1186_missing	10	9	6	10	14	3	6	2	15	8
TAATCGAGAATCGCTC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
CTGGTTTGAGATCCTG	alt_1186_missing	1	2	3	0	4	1	7	2	4	2
CCTTTATGGTTTCAGG	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
TCGATGACCATTTTGT	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
GAGCTGCTCGGGTTAC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
CTTCGGTAGGGCGTTG	alt_1186_missing	5	7	5	9	10	6	9	8	8	11
GAGGACCGTGCTCCTC	alt_1186_missing	11	17	21	11	22	11	31	12	27	16
TAAACGCGATGTTTTT	alt_1186_missing	11	36	11	16	25	16	23	18	38	14
ATTAAGTTTGACGTTG	alt_1186_missing	10	4	5	5	13	7	10	5	9	5
TTCAGCTCATGTCCTT	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
CATCCTGCTTCCCGCC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
CATGAAATGCTCCAAT	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
GAGTCAACGAGCTTGT	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
ACTCTAATGACTTCCT	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
GTGATTTTATACACCG	alt_1186_missing	9	11	3	4	7	4	13	6	10	4
TCTCCTTGAGCGCTTC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
GTATCTGTTGGCTCTG	alt_1186_missing	13	18	15	16	22	5	24	9	18	8
TTGTGGAGGCTCTCTT	alt_1186_missing	15	8	8	1	9	6	7	2	13	4
AATGGTTTCTCCAATA	alt_1186_missing	4	15	5	7	16	7	11	4	14	7
TATGCAATATTACGCT	alt_1186_missing	9	16	10	13	14	6	16	10	22	15
GAATACTTATTAAGTA	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
TACTTTTACTTAAGTC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
AGATCTTTATTGGAAC	alt_1186_missing	3	3	5	1	6	1	3	2	8	2
GTTTCTGATTTGTATT	alt_1186_missing	23	35	22	22	36	23	40	19	31	12
TATGGACTGCCCGGTC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
GTGACGTTTTCCATGT	alt_1186_missing	13	15	11	11	16	14	23	13	16	8
TAATGGTGGGGGATAG	alt_1186_missing	13	10	9	6	10	4	14	3	11	3
CCGTCCCATCTCTCCG	alt_1186_missing	20	24	22	22	39	17	27	16	31	23
CGGTCATTTTGTTAAT	alt_1186_missing	10	15	13	8	11	9	17	13	17	10
CCAGGATCGTTCCGTG	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
CACTTATGCATTGATG	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
ATGAGTGGCCTCTACA	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
TCGACACCTCTGCTCA	ref_1186_missing	3	2	10	2	5	6	6	2	4	4
ATTATGTGTGAAAGCT	alt_1186_missing	22	32	22	15	24	10	38	19	31	18
TTAACTTAAATGGGTG	alt_1186_missing	7	16	12	6	23	10	10	6	9	5
TACTTACAGCGGGAGT	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
TGTATCTTTTGGGACC	alt_1186_missing	0	0	0	0	0	0	0	0	0	0
TGTAAAATTCTTTTAC	alt_1186_missing	11	11	8	7	11	11	14	6	13	6
ACGTCATAGTATGGGA	alt_1186_missing	3	5	3	4	6	3	2	2	8	2
TATTAAAGGCCGGGAC	alt_1186_missing	20	12	14	17	22	13	33	12	28	20
TCTTGCAATAATGATT	alt_1186_missing	2	4	4	3	5	1	4	2	0	1
ACTCAGGTTCGTCAAG	alt_5900_new	2	5	1	1	9	0	1	0	2	1
TCACTATGCCGGATGT	alt_5900_new	54	71	54	39	86	55	81	41	75	48
GCCAGAGACGGCGATT	alt_5900_new	34	64	35	25	51	25	63	25	51	20
GGTGTTGCGAGTTTCC	alt_5900_new	29	60	38	23	56	28	56	32	72	19
CCGGTTAATTTATCTG	alt_5900_new	0	3	0	2	8	0	4	0	5	0
CGGCTGGTCTAGCGTC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
AAGGCGCGTATTATGC	alt_5900_new	49	89	54	57	101	44	118	36	113	44
GCCATCGTACAAGTGT	alt_5900_new	0	3	4	3	3	4	3	0	3	0
TACCTATCCTGTTTTT	alt_5900_new	17	39	23	20	36	16	37	17	49	16
TTTCGTCAGAACTTAG	alt_5900_new	2	3	4	3	3	0	2	3	3	1
ATCTTACGTGCGGGAG	alt_5900_new	0	0	0	0	0	0	0	0	0	0
CGTATTTGTTCTCTTG	alt_5900_new	176	240	196	177	225	156	243	175	293	167
GGATTTTCCTCGGCCC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
ATGCAATGTATACACC	alt_5900_new	20	42	16	25	29	18	17	13	30	11
AGATATAGTCTAGACG	alt_5900_new	0	0	0	0	0	0	0	0	0	0
AATGCCGTCTTTAGTA	alt_5900_new	2	8	4	2	7	8	7	6	10	6
CGGAGTTCGCTATCAA	alt_5900_new	29	62	67	36	84	39	86	40	82	40
CGTCTAAAGAATAATT	alt_5900_new	10	13	8	3	12	6	12	3	10	2
ATGTCTGTACCACGAT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
GTTACCTTTTTCTAAC	alt_5900_new	16	35	20	11	30	22	26	13	38	13
TAGCTATTTCTACGTT	alt_5900_new	2	5	1	1	3	3	3	4	4	3
TACCCCATGTAGCGGC	alt_5900_new	32	29	29	18	47	14	51	12	36	28
ACTTACTGTTACTGGA	alt_5900_new	0	0	0	0	0	0	0	0	0	0
GAGATGTCTCAGCCAT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
GTATCGACTGGGCACC	alt_5900_new	61	108	58	44	95	50	111	47	119	39
CAGTGTTATAATGTTT	alt_5900_new	146	228	175	154	263	124	287	125	287	125
CTTCGGGTCAGTAGGC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
TTGTAGCCAGTTGGGA	alt_5900_new	0	0	0	0	0	0	0	0	0	0
TATCCTATAGATTTTC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
CATTGTGAGTCCGTCA	alt_5900_new	7	12	5	6	7	8	17	12	21	5
TAGGCCTGGCCGAATT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
TACTTCTTTGCCGTTA	alt_5900_new	32	68	34	28	53	30	49	24	46	27
GTTACATTCATTATAT	alt_5900_new	23	25	23	12	14	14	27	11	24	14
ATCTGTCTCGGGGCCT	alt_5900_new	21	17	20	18	33	16	36	21	37	22
CTGGACACAGACTGTT	alt_5900_new	9	16	16	9	14	15	11	8	19	10
AGTTCTCGGCTATATT	alt_5900_new	24	65	37	28	45	33	55	27	91	22
GTTTAAACGTTGATTC	alt_5900_new	61	110	59	37	110	44	98	50	100	50
CGGTTCGAACCTGATT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
GTTCCTATCATGTGAC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
CAACCGCAGGGGACCC	alt_5900_new	0	1	1	1	5	1	2	0	1	1
GGATCTGGTGCGTCCG	alt_5900_new	0	0	0	0	0	0	0	0	0	0
ATATGGTACATGATGT	alt_5900_new	41	131	68	57	150	47	158	61	133	41
TACGTAGCCACGGGAA	alt_5900_new	0	0	0	0	0	0	0	0	0	0
GAAAGCTTTGTAAAAC	alt_5900_new	21	33	18	21	39	24	31	15	33	13
TTCTTAGTATTTTTTT	alt_5900_new	90	142	94	75	169	74	153	74	173	85
TCCTAAGAGTTGATCT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
GCCACTCTATTCCTTC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
TGTTAGATTGCGAGAG	alt_5900_new	15	37	17	22	45	17	33	14	37	18
CAGGAAGACCCATCCT	alt_5900_new	18	34	24	12	29	15	36	12	34	13
TGCATGGGTGTAAGGA	alt_5900_new	10	27	24	15	20	6	24	12	22	8
CGATTGATTGAGACAA	alt_5900_new	31	59	40	31	64	31	70	31	75	19
TATTACTAATATCCCG	alt_5900_new	15	39	19	18	33	10	40	15	30	9
AATTATTAATCGGTTT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
TACAAGTGTAGCGGAA	alt_5900_new	9	5	10	7	9	6	7	5	19	2
TAACCGAAGCTCCCGT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
TGTGAGGTATGGGAAA	alt_5900_new	12	22	25	15	26	19	35	13	27	14
TACCTTTAAACCAAAC	alt_5900_new	11	29	12	15	30	9	32	8	23	13
CGATTCTAGAACAGTT	alt_5900_new	0	0	0	0	0	0	0	0	0	0
CTTGGCCGCGAGCCGT	alt_5900_new	41	77	39	36	50	47	72	41	72	47
TGCTACTTTTGGATCG	alt_5900_new	90	218	119	101	239	103	207	112	265	93
AGACTCCGCATTGCAC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
ATCCGGTGATTGAGGA	alt_5900_new	9	24	14	14	19	6	21	9	22	5
GGGACACAACCTTGGT	alt_5900_new	4	4	1	5	3	4	7	2	6	1
CCTACGCTCAACCAGC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
GTCAGGAACGCATCCA	alt_5900_new	8	18	10	12	21	10	27	7	19	6
TCATGGGATCTGCCAT	alt_5900_new	16	35	39	27	53	33	52	22	48	17
CACGCCGGAGACCTGT	alt_5900_new	11	8	11	10	16	5	13	9	19	5
GGAAATATAAAACATA	alt_5900_new	0	0	0	0	0	0	0	0	0	0
ATTACTTACCCCCTGA	alt_5900_new	5	14	5	2	21	3	15	3	17	1
GATATAAGATGAAAAA	alt_5900_new	24	50	30	16	35	16	34	17	33	10
CCTTCCTGTAATGCGG	alt_5900_new	0	0	0	0	0	0	0	0	0	0
ATCATTTTAGCCCTAC	alt_5900_new	0	0	0	0	0	0	0	0	0	0
CGTCCTCATGTAACAG	alt_5900_new	21	21	20	12	26	9	43	14	27	14
TCTGTACGCTACCGGT	ref_386_missing	3	9	2	4	3	2	13	1	10	5
TGGCCCGGCGACGAAT	ref_386_missing	4	6	7	2	5	9	8	3	6	3
ACATTTACCCTTTACC	ref_386_missing	0	0	0	0	0	0	0	0	0	0
TCTCTCGCGCAGTGTA	ref_386_missing	10	7	15	13	10	6	11	7	5	3
ATGTATGTCTCGACTT	ref_386_missing	0	0	0	0	0	0	0	0	0	0
TTGGGACCCCGTTTGT	ref_386_missing	91	225	138	99	168	101	201	81	202	105
TTCATGCCGGAGACGG	ref_386_missing	0	0	0	0	0	0	0	0	0	0
TCGCTAACGTCACCCT	ref_386_missing	2	3	2	2	1	1	3	1	5	2
CTATTATGAGCTTTGC	ref_386_missing	20	33	29	28	34	20	37	22	42	22
ATATTTCATGGCGTTG	ref_386_missing	5	12	7	10	7	6	7	5	5	5
GAAGTACGGAAGCGAG	ref_386_missing	6	8	7	10	8	6	11	3	5	7
GTGGTATGCCGCATTC	ref_386_missing	39	124	81	45	105	41	114	58	85	65
ATCGTTTGCTAGACAG	ref_386_missing	0	0	0	0	0	0	0	0	0	0
TCGATTGCACAAGGAT	ref_386_missing	0	0	0	0	0	0	0	0	0	0
CGAGATACTGTAATTC	ref_386_missing	0	0	0	0	0	0	0	0	0	0
GTATGCGCTTACTAAT	ref_386_missing	0	0	0	0	0	0	0	0	0	0
GGTTCTTCTTGATAGT	ref_386_missing	0	0	0	0	0	0	0	0	0	0
AGGGGGGAGTGACTTT	ref_386_missing	0	0	0	1	1	0	0	0	3	0
ACCTAGTGGATACGCT	ref_386_missing	23	37	19	19	39	20	29	19	32	17
ACGATTTGGTATACGG	ref_386_missing	17	37	32	25	39	21	52	24	49	16
TGCTGGTTGAGCAACA	ref_386_missing	43	73	48	53	82	47	80	43	109	53
CCGCCGCCCTCCTGTA	ref_386_missing	4	15	12	7	21	12	28	13	27	3
CAAACTTTATTATAGG	ref_386_missing	3	20	4	10	15	7	14	3	22	6
AGGTCTACGTTTGTCG	ref_386_missing	45	75	52	56	68	36	60	31	77	35
CATCGAGTCTATGTTA	ref_386_missing	0	0	0	0	0	0	0	0	0	0
CTGTCTGCTCTCTTGC	ref_386_missing	111	195	142	103	200	111	217	98	248	99
CTTTTACTTGAATCTA	ref_386_missing	48	79	53	48	74	34	91	39	77	49
TCCAAGCAGGTCGACA	ref_386_missing	11	23	19	6	24	16	26	4	30	9
CATGCTACTGAAGGTG	ref_386_missing	3	12	6	7	10	8	11	6	21	7
CGTTTTTCCATAGATC	ref_386_missing	11	31	14	19	35	9	31	10	27	16
AGGTGGTCTGGAGTTA	ref_386_missing	8	27	29	32	27	14	29	13	24	11
GAAGTCATCGCTATTG	alt_386_missing	33	52	32	39	52	23	45	35	52	43
TCAACGCTGCGGATCC	ref_386_missing	15	21	18	11	22	8	20	8	23	9
CCAGAAGTAATGTTAG	ref_386_missing	3	20	4	2	23	0	29	2	20	2
TCTTCCCAGTTACCAT	ref_386_missing	7	20	10	8	11	9	13	4	15	5
TTTTGGATCATCGCGT	ref_386_missing	0	0	0	0	0	0	0	0	0	0
TATCTTTCGCTGGACG	ref_386_missing	0	0	0	0	0	0	0	0	0	0
CGTGGCGTACCTGATC	ref_386_missing	0	0	0	0	0	0	0	0	0	0
GATTAGTGCGAGTCGC	ref_386_missing	10	17	13	8	19	8	19	12	20	11
TTTCGTGAATTCTGCT	ref_386_missing	66	78	74	59	89	71	121	59	93	34
CCGTACGAAAAAGTTA	ref_386_missing	23	41	28	16	52	15	28	32	27	18
AGTAGAGCACCCGAAG	ref_386_missing	0	0	0	0	0	0	0	0	0	0
GTCCGTAGGCCTTCTG	ref_386_missing	88	134	121	75	143	59	144	81	165	76
CAACTCAGAATAAATG	ref_386_missing	5	12	7	4	20	3	8	5	9	6
GAATCCACCCCAACGT	ref_1709_reverse	13	31	25	13	37	17	25	12	36	15
AATTCACGGGATTTCC	ref_1709_reverse	60	113	87	83	140	69	133	60	113	64
TTCAACTCCTAGCCTT	ref_1709_reverse	4	19	9	5	19	6	12	4	30	9
CTTTTTGAATTCGTTT	ref_1709_reverse	13	13	15	8	13	9	21	17	16	9
TTCAAGTGAATTCTTA	ref_1709_reverse	1	4	3	2	5	1	7	1	5	2
ATACCCAAAGTCTAGG	ref_1709_reverse	35	48	28	22	54	28	48	29	48	19
TACTTGGCACTTTCTC	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
CTCACATAAAAGAGGG	ref_1709_reverse	12	32	17	17	27	11	37	13	32	21
TGTCCATCTTTTTTCG	ref_1709_reverse	21	38	29	24	37	35	48	24	31	25
GTCTGCTGACGCAGGT	ref_1709_reverse	6	17	10	3	16	1	12	4	19	7
ATAGTTGGCACGTAGC	ref_1709_reverse	1	0	0	0	0	0	0	0	0	0
GATTCACACATACTGT	ref_1709_reverse	85	153	90	71	148	75	159	71	154	80
GCGGGCCTAACATATA	ref_1709_reverse	8	20	19	6	25	9	16	9	24	7
TGGTCAAGCGTATTTT	ref_1709_reverse	7	4	8	6	9	4	22	5	13	5
TGTATGTCTCCGGGAG	ref_1709_reverse	8	14	13	3	18	8	13	8	17	9
GCACTGACTGTTAGTT	ref_1709_reverse	45	94	53	41	105	44	119	50	101	32
CTCATGGAGTTATTTG	ref_1709_reverse	24	43	46	25	60	28	57	30	55	31
CACTAATAAACATCCT	ref_1709_reverse	3	2	6	1	8	2	1	2	4	5
CTTGAAGTAGTTACCC	ref_1709_reverse	12	21	17	12	19	12	32	12	20	7
CGCTTGCTGTAGTTCC	ref_1709_reverse	14	31	12	9	22	17	26	9	29	12
CCTTATTTATTTCCAC	ref_1709_reverse	58	112	63	47	98	64	96	56	108	63
TAGTATATATGTTATT	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTCGTAATTTATT	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
CGGTCAAACGCTCATC	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTCACTGCACTGC	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
TTGTATTGCCGAAAAG	ref_1709_reverse	82	123	89	64	156	78	132	82	123	54
TCTCCTTCAACGGCGG	ref_1709_reverse	10	23	14	16	9	17	13	6	11	10
CTTCTCCTAGAGCCCG	ref_1709_reverse	9	34	15	20	27	5	28	14	26	24
TAGCGTGGACGACGCA	ref_1709_reverse	20	33	30	31	33	26	23	30	43	21
AGCCAAGTATCTTTCT	ref_1709_reverse	71	102	61	78	114	73	97	55	135	58
AACGGCATGGGATCTC	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
TAATCCATAAAGTACA	ref_1709_reverse	7	13	13	7	16	11	25	13	15	7
GAGTACATCTGTCCTA	ref_1709_reverse	48	81	62	54	84	52	98	55	110	48
AGTGGTTATCGGGATC	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCGTCATCATGAC	ref_1709_reverse	20	20	23	18	27	17	35	16	37	18
TCCTCTGGGTATGGAA	ref_1709_reverse	4	8	2	3	5	6	8	3	9	6
GCCATAAGTCCCCCTC	ref_1709_reverse	13	27	13	19	24	8	17	8	30	12
AATACGCCTCCACGCC	ref_1709_reverse	3	5	3	4	4	4	4	1	3	0
GGGGTTCTCTCCGTGT	ref_1709_reverse	2	1	4	2	5	0	1	3	4	1
CCCGGCTTGATCCTAA	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
GTAATTTGACTCGTAG	ref_1709_reverse	22	56	29	26	52	19	43	25	40	23
TATATTGTGGTCCACG	ref_1709_reverse	50	61	43	36	67	33	59	31	86	38
TAGTATGTCTTACGGA	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
TTTCACCAACCGCTAA	ref_1709_reverse	20	41	20	23	43	17	35	17	33	23
CGTTGTACGGCTTCCC	ref_1709_reverse	0	0	0	0	0	0	0	0	0	0
CTGCATGGATGGCGAT	ref_1709_reverse	41	42	35	25	60	35	48	44	50	44
AAGGGCATTTAGGGTC	alt_5785_new	10	24	11	13	27	10	27	6	34	5
GCAGGACTTCCTCAAG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
TTTTGCGAACCACGTG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
ATAACTTATCGGCCAT	alt_5785_new	4	6	3	2	8	2	5	0	11	2
CAGAGCGGCTTAAATT	alt_5785_new	3	10	2	1	5	6	8	3	5	4
AGGGCCCAGATTACCG	alt_5785_new	6	20	5	4	28	5	18	8	17	10
AGTTCATTACACCCTA	alt_5785_new	5	14	11	5	18	7	22	4	25	3
TCGTGGTTTATGACCG	alt_5785_new	1	1	1	0	4	0	2	0	1	0
GGTCGGTCTCACGGCT	alt_5785_new	6	34	7	9	28	4	44	4	48	7
ACTGGCATTCGGCTGC	alt_5785_new	3	27	9	7	18	8	21	4	26	9
TCATAATTTGGTCTCA	alt_5785_new	2	19	6	7	19	5	10	3	17	3
CACTGCGAGAGCTGCC	alt_5785_new	5	17	8	5	20	4	26	3	16	6
TCAGAGTGTCTCCTTG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
GCACCTTGAGCGACGG	alt_5785_new	10	51	17	14	51	11	55	16	38	6
TGGATGGACATACCGG	alt_5785_new	59	191	81	71	146	79	208	54	224	45
CAGATATCGCTAACAG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
GCTTCTTTAGGTCTTG	alt_5785_new	20	37	17	12	38	8	33	9	44	10
CATCAGAACTTACCAC	alt_5785_new	0	2	2	1	4	0	10	0	3	0
TTCGAGGGCTATTTTT	alt_5785_new	0	0	0	0	0	0	0	0	0	0
GTCGTATTTAAGCGTA	alt_5785_new	2	5	1	5	5	0	9	3	8	1
ATTAGCGCGCTGCCTG	alt_5785_new	19	24	6	7	30	8	28	8	22	7
TAGATGGAGTCGGTAC	alt_5785_new	8	25	12	10	21	7	17	5	26	10
CCGTTTAACGGCTGTG	alt_5785_new	2	8	8	7	19	3	15	2	17	9
ACAATATGTGATCGTG	alt_5785_new	4	16	5	6	26	8	20	6	25	5
CTTTTATATGCTGTTC	alt_5785_new	87	309	131	126	303	97	358	98	364	121
TATTTCTATTGTCGAA	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CTGAGGCGCCAGCCAT	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CCAGCGAAGAATATAT	alt_5785_new	1	3	5	2	6	0	9	1	7	4
CCCCCGGAAACGAACC	alt_5785_new	14	58	23	12	56	26	52	16	63	19
AAGCGGGCTCTGGATA	alt_5785_new	0	0	0	0	0	0	0	0	0	0
TCAATGCATGGCGGGA	alt_5785_new	0	0	0	0	0	0	0	0	0	0
GAAACTTTCAGCTCAT	alt_5785_new	0	8	2	1	4	0	10	2	7	2
CGGGACTGGTCCTTAC	alt_5785_new	2	9	2	1	10	3	5	4	5	1
GATCCTCTTACCTTGG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CGGAGAGTGGTATCAC	alt_5785_new	8	30	16	16	30	12	36	6	36	10
CCTTCTTAAATACTTG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
ACGCTTTATTATTCAT	alt_5785_new	4	11	3	6	14	3	5	6	8	4
CCTCTTATCTTTCATT	alt_5785_new	12	30	9	17	36	7	44	15	42	10
CGAGACGCGACTCTGT	alt_5785_new	5	3	2	1	1	0	0	1	2	0
TCGCCCAGAAGGGTTG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CTTCGTAGCAGGTTTT	alt_5785_new	2	9	3	5	11	1	14	2	13	6
TACAAACGATTTCCTC	alt_5785_new	10	35	20	14	41	9	26	6	31	10
ATTCGAGGCCGTACGG	alt_5785_new	2	6	1	2	8	3	8	2	2	1
GTCGTTTCCCTAGGGG	alt_5785_new	17	34	18	9	65	16	45	15	45	20
TATTTTACGTCTGTCT	alt_5785_new	1	3	1	2	6	0	7	1	1	0
AAGCTCGCCAGCTGGA	alt_5785_new	0	0	0	0	0	0	0	0	0	0
AGATCCGGCCCCCAGC	alt_5785_new	4	26	5	5	26	1	24	7	21	3
GTACTAGATGCGATCT	alt_5785_new	13	58	17	15	58	22	57	12	78	13
CGGAGTTCTCTTCCTG	alt_5785_new	42	160	35	40	94	33	118	39	134	36
TTTGCTAACATCCGCA	alt_5785_new	1	3	1	0	1	0	1	0	0	0
GTCTTAGTACGCAAAT	alt_5785_new	5	22	16	7	16	9	25	8	24	5
TTCATGATTGGGGGAG	alt_5785_new	17	43	11	8	38	11	58	16	30	15
ACTCCGGAGGTGTTCC	alt_5785_new	10	42	13	6	38	11	49	10	51	8
GGTCAGCCTCTTCAGA	alt_5785_new	4	15	13	2	8	12	15	3	16	5
TCCCGGATAATTCAGC	alt_5785_new	7	75	9	12	85	11	75	14	84	7
TCTCTAGAGACACACG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CTTGGGACCTGCCTAG	alt_5785_new	5	27	11	7	24	13	13	8	24	7
TCACAGCTAGTGTAGT	alt_5785_new	0	2	1	0	2	0	1	1	3	1
TGTTGATCGAACTGAA	alt_5785_new	10	20	8	7	22	10	16	7	25	6
CTAGACTTCTATTGTG	alt_5785_new	1	3	2	0	1	1	5	1	4	3
AACTTTTAGCACTTAA	alt_5785_new	11	24	6	10	24	4	28	7	31	7
CAGTTCTCACTTACTC	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CAACAACATGGTTTAG	alt_5785_new	9	22	15	11	18	2	27	6	24	2
TCACTACATCACGTGC	alt_5785_new	0	0	0	0	0	0	0	0	0	0
GTCGGCTGGAGCAGCG	alt_5785_new	27	68	28	11	54	20	62	20	62	20
CATAATAAGCCCGGGG	alt_5785_new	4	17	1	2	8	3	16	4	13	2
ACGTAACGCTACAAGT	alt_5785_new	0	0	0	0	0	0	0	0	0	0
TCCTCCCATGCTTTCC	alt_5785_new	13	74	21	16	62	20	71	25	73	17
GGATAGAATCGTATTA	alt_5785_new	15	21	7	10	19	2	15	6	32	5
TGTGGGGTTCACTCCA	alt_5785_new	6	18	3	2	20	7	5	1	12	8
CTGAGCTTCACGGCAC	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CTTCTAGCTTACTGTT	alt_5785_new	41	68	41	25	80	26	102	31	95	25
GTTTATGTCTAAGATT	alt_5785_new	0	0	0	0	0	0	0	0	0	0
TACGAGTGTGACGACT	alt_5785_new	0	0	0	0	0	0	0	0	0	0
TAACTAACGTGGGTAC	alt_5785_new	2	15	5	3	16	7	7	5	14	5
CATTCGAATAATCGGC	alt_5785_new	9	32	10	15	33	10	43	6	38	14
CTCCCCGTATCCATTC	alt_5785_new	0	47	1	2	30	3	36	1	35	1
TGCGCCAGATCTTTAT	alt_5785_new	29	82	28	18	79	26	94	17	96	26
TTTATGCTATGACTCG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
CGATTATGTGAGCACC	alt_5785_new	7	26	15	11	44	8	27	16	32	3
CTTACTTATCTCTCCC	alt_5785_new	0	0	0	0	0	0	0	0	0	0
GGTGCAATTTTATTAC	alt_5785_new	56	195	70	48	166	55	219	50	201	45
TGGGTCGGCCTCTGGG	alt_5785_new	3	11	5	3	15	2	9	7	10	1
TCGCGTCTATACAACT	alt_5785_new	22	46	14	12	38	17	47	18	60	14
ATTAATTGGTCCCACG	alt_5785_new	0	0	0	0	0	0	0	0	0	0
TGCTCCGCCCGGGGGT	alt_5785_new	8	10	2	6	11	4	16	2	10	4
TTCTGAGTCGGTATGT	alt_5785_new	8	26	7	12	25	7	31	6	19	5
AGAGCGGGGGGTCGCT	alt_5785_new	0	0	0	0	0	0	0	0	0	0
TTAGGCGCCCTTACTT	alt_5785_new	13	43	15	13	48	17	38	9	41	17
CGGAGAGTATTGTCAA	alt_5785_new	0	0	0	0	0	0	0	0	0	0
GGCCCTCGCTGGACGC	alt_5785_new	22	61	25	24	76	19	77	27	56	16
GAAAGGCTTATCATAT	alt_5785_new	15	27	20	20	35	10	34	9	43	13
TGCGAGGTGCTATTGT	alt_5785_new	1	13	1	1	13	5	6	0	6	2
AACTGTCTCTTCTCAC	alt_2920_missing	24	48	25	24	32	21	39	18	45	24
GTAAGGGGTTCTTGTT	alt_2920_missing	0	0	0	0	0	0	0	0	1	0
GTTTTCTACCGGTACC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
ATGCCGCCTTGACAAC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
ATCAGGTGATGATTGT	alt_2920_missing	6	18	11	6	12	9	19	7	11	5
CGGTGGGTTTAATAAT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GTCGGGGGTGTCTGGT	alt_2920_missing	10	22	11	11	27	9	20	12	22	10
CCTTCTAAGGTTGTGT	alt_2920_missing	2	2	1	2	2	0	6	0	7	2
TATTTTGATTGTGACC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GGGCGGAGTCTTGTTA	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TGAGTGCTTGCAGTCA	alt_2920_missing	2	4	1	2	6	2	6	2	5	2
TTCCAAGATACCATTT	alt_2920_missing	1	6	3	4	10	3	4	5	5	9
ATAGCTAGAACTCATG	alt_2920_missing	43	76	60	50	86	40	87	28	82	25
AGCCCCTTAATCTTAT	alt_2920_missing	6	11	1	5	17	7	12	9	9	7
TGAAAACATGGTCTTT	alt_2920_missing	6	10	15	15	20	13	18	7	21	16
CACACGCAGTTTTTTT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GTTCCGCCATCCCCAT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
ATACTCGCAACGATTA	alt_2920_missing	29	67	37	23	61	24	48	28	57	37
TGCAGCTTAGAATCGG	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TCCGTGTACCGGTTTC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
AACTCCATCTTTGGAG	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TCTTTTCCTCCGGCAC	alt_2920_missing	0	0	0	0	0	0	0	0	1	0
TGCCCTTGTTGCTTAA	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
AACGTCACGTCGTTTT	alt_2920_missing	2	23	11	12	11	14	32	9	26	7
TACGAAGGACGGTAAC	alt_2920_missing	13	30	5	17	21	17	30	15	26	7
TTTAGGACGAACCTCC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
AAATGGTAATAGCTCA	alt_2920_missing	9	14	9	4	12	3	14	7	15	4
TCTAGGCCGTATATCA	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TATGTGGGGGTATGAT	alt_2920_missing	0	0	1	1	2	0	0	0	0	0
GGGGCATTTTACACGT	alt_2920_missing	0	1	0	1	3	1	4	1	0	1
GCTGGATTTGCTGGAT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
CAATCTGTCATATAAA	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GTCCATTTCCTACGGG	alt_2920_missing	1	4	6	6	7	3	9	0	9	3
CTCTACATCGTTATTT	alt_2920_missing	5	22	9	10	21	9	23	8	17	6
AGGAGTGTCCTATAGT	alt_2920_missing	3	11	7	5	14	2	4	4	9	5
ATGGATCCGCTGTCAG	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TTCCTGCTATTCAATC	alt_2920_missing	15	29	10	12	22	9	20	17	18	5
TACAATGTGGAGGGTC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TTGGACATTTATCGTC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
ATTGAGTGGTCGAGCC	alt_2920_missing	16	24	18	8	23	18	12	12	16	19
AACCAGTGCGGCATGC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GTATAGCTTTTGCGAG	alt_2920_missing	2	4	2	2	6	1	6	2	5	4
AATTTACCTGATGCTG	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
ATCGGACAGACTAGAG	alt_2920_missing	8	19	12	6	20	6	15	5	16	14
GGGTGGTGTGTTTCAA	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TAATGAACTGCTGATT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
AGACGCTATCATCAAC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GACCCGCCCGGCCTAC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
CGCAGCGCTGTTTCCG	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TGGGCGGCCATCTATC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GGAGCTCCCTCGACTT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
AATATGTTCTTCTGAT	alt_2920_missing	9	6	5	10	11	2	3	1	10	7
GTTTAAAGCACTAAAT	alt_2920_missing	47	107	62	59	91	54	126	59	130	47
AGAGTCCCAATATCTT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GCCTGCGACGTACGGG	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
CCGCGGTATTCCGCGA	alt_2920_missing	12	25	8	11	30	7	25	6	30	5
ACGATAAGGTCGGCTA	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
AGTTTTCCGTTCAGAT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GTCTAACTCCTTTGCT	alt_2920_missing	7	14	12	12	24	10	30	3	27	9
AGTCCATTACCCCTTT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GCTTACGACCTTTGTG	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GTGAGCCAGTAACCCC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
AAACCGCATGCGTATT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
CATAATCCATTTTCTC	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
TGTAGCTGCAGACTGT	alt_2920_missing	0	0	0	0	0	0	0	0	0	0
GGTCCGGGAGCTTGGG	alt_2920_missing	1	4	3	1	9	1	1	2	4	3
GCCGCTTAAGGATATT	alt_2920_missing	19	57	32	20	58	28	60	25	50	19
GTCATGTTACGGTGTA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GGTATGAAATAGGGGG	ref_5930_new	114	112	145	120	112	93	108	85	136	92
GAGTATGCACCTGCTC	ref_5930_new	0	0	0	0	0	0	0	0	0	0
AGACCAATTGTTACTA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TTCTCACCGAGGCTAA	ref_5930_new	21	18	24	13	17	25	20	19	21	13
GCAATATTTCTATCCA	ref_5930_new	15	8	15	10	10	6	14	13	9	8
TTCTAGCAGAAATATA	ref_5930_new	23	18	22	20	27	17	30	15	22	12
ATCTAGGTCGGACAAG	ref_5930_new	53	67	67	50	75	46	74	47	57	46
TCCTTGTCACCCTTTA	ref_5930_new	2	1	3	3	3	1	3	1	1	0
TCAGCAATGGATGTCT	ref_5930_new	103	85	118	88	75	90	97	94	125	77
ACTGATGTTGCCTAGT	ref_5930_new	10	10	6	6	17	4	10	7	11	6
TATATCTAGTTTGTTC	ref_5930_new	21	24	20	19	31	19	19	18	27	14
TCTCGCTCGCTATTTA	ref_5930_new	29	38	43	37	46	24	42	30	28	37
ATATTAGACTGATTCT	ref_5930_new	13	13	21	25	15	14	15	9	17	9
TTCTCTGCGCCCCCCG	ref_5930_new	16	26	20	10	21	17	30	20	17	12
CGACGCTTCAGTCGCC	ref_5930_new	0	0	0	0	0	0	0	0	0	0
CTTAAAGTTATCATGG	ref_5930_new	41	50	79	38	66	48	61	51	70	43
GATGCGCTTACCTCGC	ref_5930_new	8	25	9	5	17	6	24	5	27	7
TCTGGTCTAAAACCCG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
AAGACATGCTATCGAG	ref_5930_new	111	137	147	129	140	106	173	116	171	146
TTTATCAAGGATTCAA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TTAGCCTCGTGCTTTT	ref_5930_new	18	26	19	37	35	28	25	27	39	20
GTACACGCACTGTAAG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GTACAAGCTCACGGTC	ref_5930_new	3	7	8	8	8	6	5	6	12	5
CAATGTACCAGGCCTA	ref_5930_new	6	2	5	9	6	7	8	7	5	2
TTTCAACATTACGTTC	ref_5930_new	0	0	0	0	0	0	0	1	0	0
ACTCCTGGCCCCTTGA	ref_5930_new	22	43	31	27	30	29	37	26	40	33
AACGGGTCCAAAGCAG	ref_5930_new	75	73	69	60	74	64	65	65	65	60
GGTTTAATACCTGGAC	ref_5930_new	13	13	11	8	11	9	12	4	17	9
ATCTACCCGGTCGTCT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TTTATTTGTCCTCTTT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
CTCATTCCTCGCAGTG	ref_5930_new	26	33	28	31	37	15	30	22	35	19
ATTTTTAGAGATTGTT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GTCATGTCCCGGCCCT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TAGCGTTCATGAGGGC	ref_5930_new	99	120	120	128	126	108	150	118	131	101
AAATCGCTATTTAAGC	ref_5930_new	10	15	18	15	15	16	22	9	20	17
TAGTCTGGTATGTAGA	ref_5930_new	23	25	37	25	21	31	27	26	30	25
TGTGGCGTAGACCTTG	ref_5930_new	25	27	32	35	25	28	24	22	39	33
CTTCTTGCGTCATGAT	ref_5930_new	25	19	21	21	37	18	20	23	17	23
TCCAAAGGTCGACCTA	ref_5930_new	9	29	12	10	22	7	20	18	31	8
GATCCAAACGCCTCTG	ref_5930_new	0	0	2	0	0	1	0	0	1	0
TCATTTGTCGGAAGCT	ref_5930_new	32	35	35	16	36	15	39	25	34	18
ATTGGCAGACGAGAGG	ref_5930_new	327	314	326	305	349	301	350	279	334	281
TACCGCAACTCGGTTC	ref_5930_new	10	13	11	8	11	12	16	11	14	9
TGTCAGAGGAAGGAGT	ref_5930_new	63	82	100	79	73	76	110	74	86	68
CCCACAAATCAGTGAA	ref_5930_new	11	19	6	13	17	11	26	8	16	6
TGAGCGATATACAGTG	ref_5930_new	9	6	6	9	7	4	13	8	8	6
TGACTCTTAGGTTTAG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TGCCCCCACGTCACAC	ref_5930_new	45	42	60	40	42	41	40	38	57	36
GGATTTTTTTAACGCC	ref_5930_new	3	3	4	5	7	3	4	2	2	1
TTGGTAGCATACAATC	ref_5930_new	43	30	31	30	31	33	30	29	39	31
TTTCGAGTCCCTGATT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TGGGTATCTACTGCTT	ref_5930_new	8	9	4	5	4	6	3	5	5	2
TGGTTTGGTCCTTATA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
AAATTTTACTTGGATA	ref_5930_new	15	17	26	20	25	23	27	23	33	20
TAGCGCAAGTCGCTAG	ref_5930_new	5	15	10	18	12	10	15	8	11	3
AACGATCCCATTTTCC	ref_5930_new	15	10	21	17	6	10	7	9	4	9
AATAATGGGTTCGCTT	ref_5930_new	38	47	43	30	42	34	45	22	45	23
CTATCAATTCATACCG	ref_5930_new	6	11	14	2	4	2	9	11	13	7
ACGGGTAGTGTCGCGC	ref_5930_new	8	15	10	7	13	7	8	14	9	9
ATGGCAAGACATCGTC	ref_5930_new	72	59	67	55	95	43	69	51	98	56
AATAGTATATTTTAAT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ATTAAGGGTAAACCTA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GTCTCCGTAGCGGTCA	ref_5930_new	136	115	137	138	127	146	142	120	146	117
CAATCGAAGCTCATTA	ref_5930_new	14	23	12	23	18	21	15	15	18	26
TTGGACTGGCTTTAAG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GACTAGACATCCTTTT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ACATTATTTATTCTCT	ref_5930_new	72	56	60	45	52	64	71	54	45	60
GATCCGGCCCGTGGTT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
AGCATGAGTCTCTTAA	ref_5930_new	43	30	46	52	52	27	48	45	37	30
ATCGGCCTCCGTTTTG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TACAGCACTGCTGCTC	ref_5930_new	0	1	0	4	4	2	6	2	5	2
GAGCTTGTGATAACAG	ref_5930_new	5	7	12	6	6	11	17	7	14	15
GGCTACTACTCTTTCT	ref_5930_new	192	219	247	176	202	163	227	167	230	188
TAGTTGCAAATTCCTT	ref_5930_new	116	127	137	128	152	131	172	100	159	112
ATACTCCGTTTCTTAT	ref_5930_new	37	42	40	28	28	42	33	37	35	23
TGTTCATACGGCCTAA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TGACGCTGCCGTGACG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ACATTTCTTTTCATTT	ref_5930_new	11	21	15	15	9	11	18	8	19	12
TCGCTCTTCACGGACA	ref_5930_new	1	7	4	3	8	5	7	13	9	0
TTATTGTCATAACATA	ref_5930_new	9	14	6	6	14	8	7	8	9	5
TGGGTTAACTAGCCCT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TCTGTCTCCATTCATT	ref_5930_new	0	6	3	2	0	2	1	2	2	3
TATTAAGAATTTCAAC	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ACACCGTGTTTTGGCC	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TTCGACGTGTCGTACG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
CCCTTCGAGGTACGTT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GGTTTGGTATCTCTTT	ref_5930_new	47	58	53	40	40	44	33	30	44	39
GCATATACCCCCAGGG	ref_5930_new	39	52	44	29	41	32	40	38	31	37
CCCGCTTCCTGGCGAC	ref_5930_new	3	3	3	1	1	3	0	1	0	0
TCTTAAGGCGTCGTGT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GCTACTGATAGACAAT	ref_5930_new	16	17	20	18	27	14	20	14	19	12
CAAGTGCCTGCCACCT	ref_5930_new	70	108	109	84	131	83	127	91	114	81
TCTGGCTAAAGTACCG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
AATTTGACAGATTAGG	ref_5930_new	22	18	14	15	14	23	22	17	18	13
ATGCCCGTCGCATTGA	ref_5930_new	10	18	9	6	14	16	4	11	13	11
GTTATTCCTTATGCTA	ref_5930_new	14	8	14	9	9	7	18	12	19	7
TTTGTCGACCAGCCTC	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TATACCCATCGGCCGT	ref_5930_new	2	1	2	0	2	1	1	0	0	1
TAATCTCCGGATGCTC	ref_5930_new	15	12	8	17	13	15	19	8	13	6
ACACAGCCAAATCTCC	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ACGCTCATGTGTTTTC	ref_5930_new	59	80	72	76	85	60	78	57	93	57
ACCAGCATGGGGTCTA	ref_5930_new	112	156	155	143	164	112	143	124	169	115
CTACCACGGCATAGCT	ref_5930_new	21	37	34	27	41	40	50	38	49	34
AACCTGGCTATCCAGT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GATTACCCATATGGTC	ref_5930_new	8	9	5	5	6	3	12	5	7	3
TACGTGCATACTGATT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TACTTTCCTTTAACAG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TGTTTAGTATGGCAAA	ref_5930_new	12	10	20	10	18	6	17	15	15	13
GTTGTGGCATTTGTAT	ref_5930_new	40	27	34	22	35	35	27	26	34	29
AAATGTCGGGTTTCCC	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ACCAATTAGGCCGGTT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
CCCTGCCCTGCCCATT	ref_5930_new	19	18	27	14	18	18	21	23	20	10
GGAATATTCGACACGG	ref_5930_new	47	68	67	50	64	54	66	55	56	50
GTAGAGTGCGTTTACG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ATTGCCTTTTTCGTTG	ref_5930_new	9	8	4	6	10	7	18	4	5	9
CTTCAATGGCTCCACC	ref_5930_new	35	39	44	32	41	33	37	36	35	43
GTTTCGTATGATCTAG	ref_5930_new	38	27	20	20	19	22	31	17	38	19
ATCCGCAATTTCGTTT	ref_5930_new	8	10	8	1	7	3	8	2	7	6
ATTTTAAGATCAGGTC	ref_5930_new	16	12	19	18	25	14	16	18	15	11
CGGTATTAATAATACA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TTTAATATGTCTATAT	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TTGTTTGTCATACCCA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
TGAGGGGGAGTCCTCA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
ACTTGACGGCATCTCG	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GTAGTGCATAGCCTGA	ref_5930_new	1	4	3	2	7	5	5	1	7	6
TCTGATGTATCTAGAA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
GGTGCGTTGCAGTAAA	ref_5930_new	28	27	29	23	44	22	21	37	31	22
TCTGTGGTCGGTCCTA	ref_5930_new	0	0	0	0	0	0	0	0	0	0
CGCTTCGCGCCTCTGT	alt_2054_missing	2	4	2	0	5	1	10	2	6	1
TTCCCCCGTTGCTGGA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TGAGTCCAAGAGCCGA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TAGTTCCTCGTATCGT	alt_2054_missing	1	1	0	0	0	1	1	1	0	0
GACTCGGCCCTCATGG	alt_2054_missing	2	1	5	5	3	6	1	0	1	1
ATCCCTCACTACCACG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTACTCGACATGGGGC	alt_2054_missing	0	0	0	0	0	1	0	0	0	0
ACTCCTCCGGCGGGGT	alt_2054_missing	0	3	0	0	2	0	2	0	1	1
TGCTAGTGTGCTGGTC	alt_2054_missing	2	2	3	1	2	2	2	0	2	2
GGCGGAAATATACCTT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTTCACATTGCGACTG	alt_2054_missing	6	5	3	2	5	2	10	5	13	2
AAAGAAGCACAGCGTT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
AACTAGGCTGCTAGGT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
ATGGACTCCCAACCTG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GATAGGCTGGGAACAG	alt_2054_missing	11	13	19	11	9	12	13	9	11	10
CTCGCTTCCACTTTGG	alt_2054_missing	1	2	0	0	4	0	0	1	5	3
GCGCCAGGGATGCCCG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GATCTTGTCATTTTTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
ACTCCGCAGTGTATCT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CCTACATGCTAGGACG	alt_2054_missing	5	8	5	1	3	3	5	2	8	3
CCTTATTATTGTTAGC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTAACACTAGGT	alt_2054_missing	4	0	5	3	1	2	1	3	5	2
GATTTAAATGCTTCCA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
AACTCATACGTACACT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TACCATGTCCTCATTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TTTATCCTTCCGAGCG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTAAATCCATGG	alt_2054_missing	21	12	20	5	23	14	12	15	15	14
CGTACGAGTATTAAGT	alt_2054_missing	14	26	8	12	20	8	28	17	21	10
ATACAAACGGCGCGTT	alt_2054_missing	1	3	2	4	5	3	4	4	3	0
GTAACCGTATGCCCCA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTTAATAAGGACCTTG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTGAGAGAGTTTGTTC	alt_2054_missing	4	10	1	6	5	2	4	6	3	3
ATGTTGACGTATTTCT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CATAAAGGTCTAGCAC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TATTGAGGTAAGCGTC	alt_2054_missing	1	2	2	4	3	0	3	1	5	4
GGAATTGTTACCTTAT	alt_2054_missing	4	1	2	1	11	2	6	4	2	1
TTTCCATGAAATCATT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTAAGCTACAAG	alt_2054_missing	2	6	6	6	5	3	4	2	4	0
CAATTATTCGAGTGTC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TGATTAGCGATATGAT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TAAAAGACTCGCATTG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TGGGGGAAGTTCTACT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GTTTAGGATAGGGTTT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
AATTTAGTTTACGGTA	alt_2054_missing	7	4	8	2	2	4	4	3	2	6
CTGGCTCGGCCCTTGA	alt_2054_missing	6	4	9	5	9	8	10	0	11	4
CAAGTTACAAGTTCGC	alt_2054_missing	3	0	2	1	5	2	2	0	1	0
CGACGTGCTATCCGTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
ATGTCTCTAACCCACC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TCTTTATATTGAATAA	alt_2054_missing	2	4	6	2	4	2	1	2	3	1
CATGCCTCCCTTGGCC	alt_2054_missing	0	1	0	0	0	0	1	0	2	0
GAATCTCGTTCCTCAT	alt_2054_missing	5	4	7	5	3	7	2	1	3	5
TCGATCCTGGAAAGCT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
ATAAAGGTGTCCGAAT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CGTTAAACACGAAACG	alt_2054_missing	1	2	2	2	1	1	5	3	2	2
CCTCCCTTCCATATTG	alt_2054_missing	2	4	2	1	1	2	1	2	3	7
CTCTCATATCTGCGAC	alt_2054_missing	2	6	2	2	4	5	4	1	4	0
CATTGAGCGACAGTCG	alt_2054_missing	0	1	1	0	2	0	0	2	0	0
CTTTAATTATCAGTGG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTTGGCTACCATCTAT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
AAACGAGTAAGTGCTC	alt_2054_missing	0	3	2	2	0	1	3	1	0	1
AAATCTCAGGCTGCTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CGTGGTGCAGCTCACA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TCTATTAGACCTTGCT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GTTGTGCTCCTCACTC	alt_2054_missing	1	2	5	0	7	2	3	2	2	2
AGAGCACGCATCCGGT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GCGTTAACGCCATCTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GGCGAACTTTCGGCGC	alt_2054_missing	0	3	0	1	1	3	4	0	6	0
CCGAATGACATCTTAT	alt_2054_missing	3	10	2	3	5	0	5	3	3	3
TATAGAGCAGTAGTTT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTCCCATCGTTAATCT	alt_2054_missing	0	2	0	0	0	1	0	0	6	0
AGAATTTTTGATCTTC	alt_2054_missing	4	5	9	9	9	7	8	7	9	8
GTTCTGCTGTCTGGTT	alt_2054_missing	7	3	3	2	1	2	5	4	4	2
GGCCAATTACCTAACC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TATTTTAAGTGAGTGG	alt_2054_missing	1	6	7	0	9	3	10	3	4	4
ATGAGGTCCGTTCTTA	alt_2054_missing	1	0	0	1	0	1	0	0	0	1
AGGTGCTGTGCAGTCG	alt_2054_missing	1	4	0	1	3	5	6	1	5	1
GTTCTTGATTTCATGT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TCGACCTCGTCTCATT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TCTAGAAACGCCTGAC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CAGCGTAAAGTAAATG	alt_2054_missing	8	0	9	3	8	7	8	8	4	12
GTTATACCGTCTCTCC	alt_2054_missing	0	0	1	0	1	0	0	1	0	0
ATGGCGCGCCCGTCAA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GATTTAGAACGGTCCT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GGCTATCCGGTTTGGT	alt_2054_missing	3	3	3	6	3	0	2	1	7	1
TAAAGTTCTCAAAACT	alt_2054_missing	2	1	2	3	3	1	2	3	1	0
ACCCATGCCAGTCAGC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GGATGATATCTTACGT	alt_2054_missing	5	2	2	3	2	2	6	3	2	2
TCTCTTCCATCGAGAC	alt_2054_missing	2	1	4	0	3	5	2	4	5	2
AACATTTTAGGGACGT	alt_2054_missing	6	11	6	11	7	3	8	6	7	4
TCCGCCTAGGGTTCTG	alt_2054_missing	4	3	1	4	5	5	2	3	5	4
TTTGTGTTCCACATGG	alt_2054_missing	1	2	3	5	2	5	5	3	6	2
GTCGTAAGCTGAAATG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TTGCTTGACGTTATTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GGTGTGTATCAGCTTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CGTTTGTCCCTGAGGT	alt_2054_missing	0	5	2	0	1	0	0	0	1	2
TTCATACTCTCTTGAT	alt_2054_missing	2	7	4	3	7	3	7	3	4	3
TGGTTGGGGTTTTGAC	alt_2054_missing	6	3	3	1	2	6	7	2	3	1
TTCGAATATGATCTCA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CACGTTGTCGCGTCGT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TCAGGTATACAGGTTC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CGCAGGTGTGACGTGC	alt_2054_missing	2	2	0	1	1	0	2	0	0	1
AGAGGGTACTGCAAGG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GTAGGGCTCAGGCATC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TATTGCTCTCTCCCCT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CTTAGGGAACCAGGGT	alt_2054_missing	2	2	3	0	0	0	3	1	2	5
GAATAGCATAATAGCT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TGGACCTCCCTCCGGC	alt_2054_missing	6	5	6	7	6	8	17	7	14	5
CTCGTGTCGCCGTAGC	alt_2054_missing	0	0	0	2	0	0	2	0	3	1
TGTTGTCCCTACTGGA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
ACTTCACTTTACTCTC	alt_2054_missing	0	1	0	2	0	0	1	0	1	0
GCTGCCGGATTTACGG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
ATTCATGTTTTCCAAG	alt_2054_missing	5	2	4	1	0	0	0	1	3	2
CTTCCTCTGGGGCTCA	alt_2054_missing	7	3	6	3	4	2	3	2	3	5
TCAGGAGTCTAGTTAG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TTGTTACGTCTGAAGC	alt_2054_missing	8	7	12	9	7	5	6	5	10	4
ATAGGGCTACTGTCAT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TACTCGTGGTACGAGT	alt_2054_missing	0	3	1	0	7	6	4	2	0	2
TTTTAACTTGTAACTT	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
TCCGTACTCATTGCCG	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CCGGTAATTTGCTGCT	alt_2054_missing	1	4	3	1	5	0	5	0	7	0
TCTAGGACATCCGGCA	alt_2054_missing	2	3	4	1	1	0	5	4	0	2
TGGCCGATCAACGTGC	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
GTACACGCTACCGGTA	alt_2054_missing	0	0	0	0	0	0	0	0	0	0
CGTTCCCGAGTTTAAC	ref_5825_new	10	14	18	18	18	12	21	9	21	8
CATGACCCTCGTTAAC	ref_5825_new	0	0	0	0	0	0	0	0	0	0
TCATCACGCTCCTGAC	ref_5825_new	11	15	2	7	10	5	21	2	13	7
CGTATCAACGGCTGTT	ref_5825_new	52	55	54	30	68	43	68	31	72	32
GTTGACGCCTCTTGTT	ref_5825_new	89	135	97	71	115	85	141	86	144	79
TATAGTCGCTCTCTGT	ref_5825_new	0	0	0	0	0	0	0	0	0	0
GTCATCCGAGCTTTAG	ref_5825_new	9	32	16	5	29	16	21	19	26	14
TTCTACACTACGGAGC	ref_5825_new	24	40	18	36	45	20	38	25	32	14
TACCGCTTGATTTTGA	ref_5825_new	7	15	18	3	10	10	16	4	17	9
CGTTGCAAGATTACAC	ref_5825_new	55	42	37	34	54	36	52	46	61	35
TCGTTCTCGATAGCTA	ref_5825_new	14	24	20	20	33	27	28	14	39	21
GCGGGTTGCGTCGCGG	ref_5825_new	35	51	55	41	57	35	63	29	60	47
TGTCTTCTTCTTCTAT	ref_5825_new	14	21	18	19	26	17	36	11	26	11
ACAAGATGTATTGTTC	ref_5825_new	0	0	0	0	0	0	0	0	0	0
AGGTAATAGAGCTGGC	ref_5825_new	22	31	18	19	38	20	34	16	27	16
ACCGACCTTCCTGTTT	ref_5825_new	10	50	16	5	42	8	42	12	48	10
GAATTGCACTTTCTCT	ref_5825_new	0	0	0	0	0	0	0	0	0	0
CCGCGGAATGAATCTG	ref_5825_new	13	10	7	6	12	7	9	2	11	0
AACTTACTCCTTCTCG	ref_5825_new	11	23	18	11	30	19	30	15	16	7
CCTAGCCTCTGATATT	ref_5825_new	0	0	0	0	0	0	0	0	0	0
CCTTGCCTCTGATATT	ref_5825_new	181	296	201	183	272	176	340	143	283	153
CGTAGAACGTAGTAGG	ref_5825_new	0	0	0	0	0	0	0	0	0	0
TCATTTTGTGTGTGTG	ref_5825_new	4	5	3	4	10	2	11	6	11	8
GCTAATGTTTTATCTA	ref_5825_new	0	0	0	0	0	0	0	0	0	0
CGGGTGATAGGATTGA	ref_5825_new	22	39	28	20	31	18	34	21	51	21
CAGCTACTGGCCGAGT	ref_5825_new	1	4	5	3	8	4	6	3	7	4
TGTTTAGCCTCAATCT	ref_5825_new	14	22	22	10	21	9	24	11	22	7
CGTGCGACTTCTTTAA	ref_5825_new	0	0	0	0	0	0	0	0	0	0
TGGATGACCCGGAAAA	ref_5825_new	67	63	82	61	77	83	74	71	93	66
ACCAACCGTTTGCGGG	ref_5825_new	4	22	14	15	26	8	20	13	19	11
GCTTTTTCTTGTAGCA	ref_5825_new	0	0	0	0	0	0	0	0	0	0
GCAGTTGTCAAGTTGC	ref_5825_new	0	0	0	0	0	0	0	0	0	0
GACCTAAAACTTATAT	ref_5825_new	65	121	69	63	100	49	116	58	108	45
TCGCTGCTGGTTCCGT	ref_5825_new	12	5	17	14	2	7	4	13	6	8
AATGAGATCGAAAGCC	ref_5825_new	2	6	2	9	12	8	6	8	11	3
CTCTGGAAGGTACGTG	ref_5825_new	24	55	46	25	37	31	54	29	50	20
ATCTGCCCATTCACTA	ref_5825_new	8	12	6	5	10	6	18	5	23	8
CCCGGTTTATACTTCT	ref_5825_new	9	16	4	4	14	5	15	8	10	2
ATTTTTGTCTTACAGG	ref_5825_new	34	52	31	26	56	35	51	39	57	35
CTATTTTTACATTGCA	ref_5825_new	60	72	70	67	73	63	96	52	124	44
GCAATGAAGGCACCCC	alt_1709_upstream	30	47	32	43	82	25	61	20	54	43
GGGCGCAAAGGTATAG	alt_1709_upstream	35	89	49	35	90	51	91	35	106	35
ACGCCGCGCTTTCTAA	alt_1709_upstream	21	45	24	17	44	16	34	13	41	27
GACAGTCGGGGGTTGG	alt_1709_upstream	31	53	29	36	80	33	57	39	74	29
CCCGCTTTGTGTTCAG	alt_1709_upstream	27	84	33	17	71	34	68	26	107	25
AGAAATTGGAAGCGTA	alt_1709_upstream	11	6	14	3	5	2	10	1	6	3
GTTCGGCTTAACTTAT	alt_1709_upstream	16	26	18	17	32	19	40	14	36	16
GCCGTAGACTGTAAAG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAGTGAATTTGGT	alt_1709_upstream	39	59	43	26	81	38	63	27	61	21
AGAAGTAGCCGGTGAC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CCAATGGACTGACGGA	alt_1709_upstream	9	14	14	9	10	4	11	3	10	5
GACGTAACTGGCCTCA	alt_1709_upstream	37	76	50	36	70	61	85	45	76	30
ATCTTCCAGGAGGACT	alt_1709_upstream	81	109	72	56	119	48	118	57	124	55
CCCGTCATCTAGAACA	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTGCCTGGCAACTAAG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AATCTGTTGTTACCCT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
GATTGTTATTTCCTTA	alt_1709_upstream	4	7	5	4	16	6	10	4	12	8
ACCACCCGTCATCTAT	alt_1709_upstream	4	24	9	4	16	5	26	2	16	1
CTTAGCTTTTTAATAG	alt_1709_upstream	38	73	59	26	70	26	70	33	87	36
TCAAGTAATCAAACTA	alt_1709_upstream	45	72	56	37	84	43	103	49	98	46
CTGTACAAGCAGTATT	alt_1709_upstream	5	14	11	5	11	8	13	6	17	6
CTCCTCTCTTACGGAC	alt_1709_upstream	7	4	1	5	12	2	13	6	18	4
TTGCTTGGAGGTATAG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CCATTAATCTGAGTTA	alt_1709_upstream	15	15	14	13	20	8	19	15	23	10
CGTAGTAGCAAGGGTT	alt_1709_upstream	27	36	21	30	56	25	62	25	58	28
GTCTACTGGGCGTACT	alt_1709_upstream	1	0	1	1	1	1	2	1	0	0
CGACTTGTCGCTTAGG	alt_1709_upstream	22	41	25	31	35	24	52	15	51	15
TGTTGACGTAGGTCGG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
ATGAGGCTGACCCCAT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGACGTGTTTGGAAAT	alt_1709_upstream	5	5	1	3	16	4	6	5	8	7
CATATTTCTTAACTTT	alt_1709_upstream	24	44	27	22	49	20	51	22	38	14
ACTAGACCACCCTCAG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTTTGCGCTTCG	alt_1709_upstream	61	126	76	61	108	52	139	59	130	49
CGTTAGGCGGGTACGA	alt_1709_upstream	1	2	2	5	2	2	3	0	0	2
CAGTCCTACCATGTAA	alt_1709_upstream	0	2	0	0	1	0	0	0	0	0
CCTTTCTGACGCTTAC	alt_1709_upstream	28	48	28	35	56	35	74	30	68	20
GAATCCTGTATTGTGG	alt_1709_upstream	50	88	52	44	87	43	96	45	108	37
TTGTAGGCAGTATTTT	alt_1709_upstream	36	59	46	32	59	32	54	31	64	20
TGCCTATTTTTTCGTC	alt_1709_upstream	0	0	0	0	1	2	1	2	2	1
CCCTATCGATAGTTCG	alt_1709_upstream	5	30	6	6	26	5	36	6	31	4
GCTGGTATCTGTCGTT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTAACCTGCTCAAGGA	alt_1709_upstream	15	30	30	16	48	19	32	18	50	16
GACATCGGGCCATAAT	alt_1709_upstream	1	9	3	2	4	3	6	1	6	2
TCCCTAGGCACGGATT	alt_1709_upstream	27	26	18	17	29	22	45	22	44	15
GCAAACCTGGCTTTAC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTACGTGATATACTGC	alt_1709_upstream	7	15	10	10	23	11	12	8	25	3
GATTCCAACATATGAA	alt_1709_upstream	12	5	5	2	3	3	9	6	6	7
TCGGGTTACTCTGGCG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGGACTTTGCCCG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTAAAGGACAATG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTGCTTGGCAAAC	alt_1709_upstream	10	9	4	7	11	5	19	3	11	9
CAAAATATCTTCTACA	alt_1709_upstream	67	75	42	46	79	46	83	34	101	35
GTCACCGGCCCGCTAG	alt_1709_upstream	0	1	1	0	0	0	0	1	0	1
CCGTAATTCAGCTAGA	alt_1709_upstream	19	43	34	22	47	20	57	22	42	19
GACGTCAGGTTCTTGG	alt_1709_upstream	32	38	21	22	36	21	49	24	35	23
CAGTATATGTTGTTCA	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCTGGACTCATCT	alt_1709_upstream	50	99	60	55	106	49	86	58	79	49
CAGAGCCATCTTACAA	alt_1709_upstream	6	14	8	11	19	7	14	4	13	8
TGGATAACGGTAAAAA	alt_1709_upstream	4	19	9	3	17	6	14	6	16	5
TGTTCGCGACGAGGGA	alt_1709_upstream	6	12	7	2	23	11	11	4	12	8
GGTCAATAATCTTGAT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCTCCAAAGGTAA	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CCTACGGTGACATGCT	alt_1709_upstream	4	5	6	8	14	5	13	3	14	3
GTAGTTGGTAAATACT	alt_1709_upstream	7	23	9	8	16	15	11	17	22	7
AATAGTGGGGAACATA	alt_1709_upstream	18	60	24	36	58	28	67	19	73	28
TGTATGCAGGTTCTGG	alt_1709_upstream	17	27	16	15	23	11	40	9	24	12
GAGCTTGCAGTGCTCC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTTCTCGTGTGA	alt_1709_upstream	57	132	89	59	150	81	176	67	145	83
GCTTACATAACGCCTA	alt_1709_upstream	11	16	7	8	16	5	20	5	31	12
TCAATGGCTACCACGA	alt_1709_upstream	15	27	19	8	27	12	21	9	31	16
TCTTAATGAGCAGCTC	alt_1709_upstream	17	18	19	20	19	14	23	11	29	15
GTATTTGTAAATACTT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TACAACGAACTAATTG	alt_1709_upstream	7	8	5	8	6	2	9	1	5	4
TACCTGTTGATTGCAC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CGAAATCTTGTGCTTT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGTGGTTCTAGGTCTA	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGGATTAAGCGTCACA	alt_1709_upstream	17	25	17	22	25	20	29	15	25	12
TGGGTAATTCACCAGA	alt_1709_upstream	35	47	43	19	45	25	42	30	57	14
TGTCTTTCGTAACAGT	alt_1709_upstream	1	2	0	0	1	1	1	0	0	1
CGCCCGTTCCCGTTCT	alt_1709_upstream	9	15	24	11	19	8	22	10	17	4
TCTTCAAGAATCGTTC	alt_1709_upstream	7	19	6	6	14	7	22	9	25	9
GAGCTCACTTTGATTT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTGGCTGCTCGG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTGGCCTCTTTACCAC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCTATGCCCATGACGT	alt_1709_upstream	68	99	76	83	121	79	82	58	108	73
CGCTTATTGGTTGGCT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGCTGTGTGTTTA	alt_1709_upstream	31	48	29	24	56	26	57	21	52	25
CGGTCGCCTTTTGTAA	alt_1709_upstream	1	7	2	2	9	1	6	0	8	2
TCACGTGCTTTTGTCC	alt_1709_upstream	4	12	10	7	12	10	5	7	11	14
TGGGCACACTACTCGC	alt_1709_upstream	3	20	6	6	15	8	23	4	32	1
TTTCGTTCTATCTTTG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CGTACGTTTTGGCAAT	alt_1709_upstream	7	24	11	10	22	10	23	4	33	12
CACGCCGCACCACCTA	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCAAACCGCACAC	alt_1709_upstream	10	17	6	9	15	5	17	7	25	3
CTTTTCTTGTTTGTCT	alt_1709_upstream	3	13	8	5	18	7	23	7	10	8
TGCAGTTCTTCGATAC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAAGCATACTGAC	alt_1709_upstream	4	9	5	6	7	4	11	1	13	5
AGTTCTTCTGCTTACT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AAAACTGTTGCGTGTT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
GTAAATGGGGTCCAAG	alt_1709_upstream	18	12	12	10	14	15	22	12	18	6
TAGGTCGTTATTACCT	alt_1709_upstream	7	13	11	12	15	4	24	5	15	8
AGTTATTAGTACCCCT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CAGGCATCTATTTGGG	alt_1709_upstream	1	13	5	1	5	7	9	2	10	3
AGCCCTTCGCTCTTTT	alt_1709_upstream	22	39	27	20	42	21	42	15	47	14
CCTTTTCCTGTATCGT	alt_1709_upstream	24	53	33	21	50	26	45	35	70	24
TTAAATCGAATGATTG	alt_1709_upstream	11	14	23	5	25	11	14	10	12	9
AGCGACTCTTGAACTG	alt_1709_upstream	5	15	11	4	9	8	22	7	32	8
TCGGGACTTTGCTTGA	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTTTTAATTTAGG	alt_1709_upstream	5	24	16	14	14	19	18	8	32	8
CGATGAGTATTTGGAC	alt_1709_upstream	0	0	2	0	1	0	6	1	0	1
TTAATATTTCTGTACG	alt_1709_upstream	2	4	2	2	5	2	8	1	4	3
TTTAACTCTTACTGCT	alt_1709_upstream	7	8	7	2	10	3	16	7	7	4
GTTTATGTTCGGGTGT	alt_1709_upstream	6	18	6	7	11	10	16	3	16	5
CGGTTTATGAAAATGG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGAGTGATACAGTAGC	alt_1709_upstream	2	7	1	4	3	5	4	4	4	0
CAACAGTTGGCAGGGT	alt_1709_upstream	44	47	46	48	75	42	69	26	84	32
GGACTACTTCCAATTC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGGTGTGCGCATA	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTGCTGTACCAC	alt_1709_upstream	23	37	23	23	28	16	50	17	35	27
TCTGTATTGGCCGTCG	alt_1709_upstream	1	5	1	2	2	1	3	0	0	1
CCTTAAGCGGTAGGTC	alt_1709_upstream	6	23	2	3	28	7	21	11	24	8
CCATATTAGGTGTTCT	alt_1709_upstream	13	35	17	20	35	14	39	7	42	18
TCTCCATTTCTTTCAA	alt_1709_upstream	2	6	7	4	5	5	7	2	3	5
ATTTAATATTGTGGCA	alt_1709_upstream	12	23	10	8	11	7	16	3	16	11
CGCGTTCCTTGGCTAG	alt_1709_upstream	7	18	15	12	23	12	31	10	28	13
GGTCTCTGACTGACGT	alt_1709_upstream	3	3	6	2	10	3	7	3	7	3
TTAGGTAAGTCCTAGT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTAAAGTTCTCGC	alt_1709_upstream	2	1	3	2	8	0	0	0	7	2
GTGCCATTCCAAAAAG	alt_1709_upstream	11	33	20	13	20	20	27	7	25	20
CTTAGACATTTTACGT	alt_1709_upstream	54	102	55	52	134	64	115	49	137	60
CCGTTATTCGAACCGA	alt_1709_upstream	3	4	0	0	4	3	2	0	6	0
TGTGGAGCTCCCCGGT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AATCTGCTGTTTACGG	alt_1709_upstream	15	52	43	19	44	23	46	19	42	16
CGGGGTTTCTCAATAC	alt_1709_upstream	11	37	14	12	25	11	34	18	25	14
CCGTCGTCGTTTTTGG	alt_1709_upstream	11	21	18	19	38	15	45	15	59	14
CCACTCGTGCATAACG	alt_1709_upstream	9	15	7	3	15	6	28	2	24	6
ATTTGGCAGGTTAGGT	alt_1709_upstream	3	10	6	1	22	6	17	4	13	6
CCGTGGTTTCTCTTTA	alt_1709_upstream	1	0	0	0	1	0	1	0	2	1
TCTCCGGTTCGGAGAT	alt_1709_upstream	39	40	51	30	39	33	45	30	35	25
TCACTGTACTCTTTCG	alt_1709_upstream	14	23	22	16	43	19	47	10	39	14
TCGCATGTATTTACGG	alt_1709_upstream	9	25	17	12	24	10	29	13	32	12
CGCGAAATATCATGTC	alt_1709_upstream	29	48	43	42	62	34	50	36	56	18
TTTCAGTTCGAGTCTC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGGATTTAGCTCGCGT	alt_1709_upstream	9	10	6	9	12	5	6	7	4	7
CCCCTAACCTCACGTT	alt_1709_upstream	8	52	14	19	53	13	41	17	51	14
TGTTGTGGCTGCTCGT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TGTCAGTAACACGGCG	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TCTTAACGTCCTAGAT	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCGCACTAGGAGT	alt_1709_upstream	14	29	10	21	16	12	18	16	36	6
CACCCTGGGGAGACGC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
AGCGACAGCCTACCTC	alt_1709_upstream	15	44	25	11	39	23	44	31	42	20
TAACGCTTGGTCGGCC	alt_1709_upstream	15	35	26	23	26	15	45	12	32	14
CCGCTGTTGCCCTCTC	alt_1709_upstream	0	0	0	0	0	0	0	0	0	0
TATCGCACGTTCTCTA	alt_1709_upstream	11	31	9	6	15	4	26	14	28	15
GCCTTCTTTTTTTAGC	alt_1709_upstream	9	11	4	9	12	17	13	2	13	5
GATCCTTGTTCGCTAT	alt_1709_upstream	22	55	38	23	56	24	47	24	68	22
CTAACACTACAATAGA	alt_1709_upstream	26	56	40	18	49	18	62	29	63	19
ATTATAGATATGCTCT	alt_1709_upstream	6	10	11	5	11	6	11	6	13	10
ACCCATGAGTTGAAAT	alt_5988_new	38	46	27	29	53	35	36	44	51	28
TTAGTTGGGGTTCGAT	alt_5988_new	10	21	12	7	11	6	11	13	9	4
TATTACGATATCATTG	alt_5988_new	122	242	172	138	221	131	193	131	232	105
AGAATCCAATTCTTGT	alt_5988_new	6	11	2	14	10	8	19	5	17	10
GATCATGGGGAAGGGT	alt_5988_new	28	24	27	23	24	29	25	13	32	22
ACCATCCCTGAAGGGT	alt_5988_new	6	26	20	12	21	17	18	9	21	11
GCGGCATATTCGACTC	alt_5988_new	0	0	0	0	0	0	0	0	0	0
TACGAAATCCTTGTCT	alt_5988_new	21	29	31	34	50	27	34	22	31	21
GTTCAGAGGACCAATC	alt_5988_new	6	20	9	11	15	3	11	9	11	6
AGTTTCCTACAATTAT	alt_5988_new	26	46	26	23	53	18	50	21	46	21
AGGCTCGAAATATGCC	alt_5988_new	51	73	50	58	85	68	71	45	67	56
GCTTGGTTTCCGTGTT	alt_5988_new	15	31	41	32	40	19	33	31	35	30
CCGCATGGGATTTCCT	alt_5988_new	17	39	39	30	46	24	55	32	46	5
AATAGTGAACATCCTC	alt_5988_new	17	32	29	26	44	24	43	24	49	25
TTCACGGGGATGGCAC	alt_5988_new	2	2	8	3	3	5	3	6	3	1
GCTTTTTGCGTCGCAT	alt_5988_new	0	0	0	0	0	0	0	0	0	0
TTCTATAGGTTACTCT	alt_5988_new	13	12	12	16	13	17	18	16	18	9
GGGCTCGGATTTGAGG	alt_5988_new	24	48	28	32	41	25	54	27	62	36
GACGGCGCTCGCCCAC	alt_5988_new	14	17	30	20	33	12	25	21	24	20
TACATATTGGGAGGAG	alt_5988_new	8	4	1	3	11	5	4	3	9	1
TCTGTTTCCTTCTCTG	alt_5988_new	3	3	3	6	10	3	7	1	7	5
TCGTATTCCACCCCAG	alt_5988_new	381	614	461	439	611	363	610	371	632	345
ATAAGGCTCTGAGCTT	alt_5988_new	90	108	92	88	131	98	166	86	165	76
TTGCTAATTCGCTTCC	alt_5988_new	0	0	0	0	0	0	0	0	0	0
TCGGATTGTCCTCACC	alt_5988_new	49	107	67	68	83	65	111	36	131	57
TCTACTGATCAATCCA	alt_5988_new	0	0	0	0	0	0	0	0	0	0
AAACTTGGTACCAGCT	alt_5988_new	0	0	0	0	0	0	0	0	0	0
CACCATGGCACCTCCT	alt_5988_new	43	76	63	50	71	47	83	59	62	49
TAGCCGACCAATGCAC	alt_5988_new	0	0	0	0	0	0	0	0	0	0
TCCGCTAGGTCCAGGC	alt_5988_new	10	37	20	18	24	16	33	16	20	8
TCTGCGACATGTGGGG	alt_5988_new	19	32	17	13	27	9	33	16	29	13
GCAGGCCTTAGTCAGG	alt_5988_new	2	3	2	0	4	1	1	1	3	0
GTGCTACTGTAACCCT	alt_5988_new	56	126	72	65	114	65	119	35	109	57
TTCGGTTGTATTACAA	alt_5988_new	23	31	16	17	39	21	48	17	31	22
CGGAATGAGTTTCGCC	alt_5988_new	4	0	3	3	2	1	1	2	4	1
ACGTATTCCACCCCAG	alt_5988_new	0	0	0	0	0	0	0	0	0	0
TATGGTTTTAAATCAT	alt_5988_new	26	49	38	28	53	30	56	22	55	25
TAATTGCCTTCTTCAT	alt_5988_new	3	4	1	2	0	1	5	1	5	1
AATATGCCAACAATAA	alt_5988_new	0	0	0	0	0	0	0	0	0	0
CTCATAACGCCGGCAT	alt_5988_new	0	0	0	0	0	0	0	0	0	0
CTTTCATCGCTCCCTT	alt_5988_new	50	142	61	50	111	61	144	57	120	49
ACATCGTGTCCTCGTG	alt_5988_new	0	0	0	0	0	0	0	0	0	0
GGCTTTACTAGACCTC	alt_5988_new	0	0	0	0	0	0	0	0	0	0
ACGAGCTATTGGCTTC	alt_5988_new	1	13	4	4	7	4	1	3	5	0
ATATTTTGAACCTGGC	alt_5988_new	1	8	6	2	16	7	13	6	10	8
GTCCCTCCAGGAATTA	alt_5988_new	0	0	0	0	0	0	0	0	0	0
ATATGTATCGACTTGG	alt_5988_new	11	9	18	4	21	20	16	7	13	2
GCGTCCGCGATACTGA	alt_5988_new	0	0	0	0	0	0	0	0	0	0
TAAGGTGTTTATGTCC	alt_5988_new	18	24	21	7	24	11	25	15	27	13
TAGAGCTTAGACGGTA	alt_5988_new	28	60	40	49	48	27	52	25	57	21
TTTGTCGTACGAACAC	alt_5988_new	0	0	0	0	0	0	0	0	0	0
GCAGGTCTTCAATTGA	alt_5988_new	8	36	29	21	32	21	49	32	37	19
GCTTCGTCTTAGTTAC	alt_5988_new	120	233	154	133	250	118	210	124	282	130
GGGCAACGCAAATCAT	alt_5988_new	24	46	35	38	54	24	40	24	56	25
AGTAGCCAGGTATCTT	alt_5988_new	11	31	17	13	26	10	26	14	23	17
AACCCCGCCTCTCATT	alt_5988_new	0	0	0	0	0	0	0	0	0	0
GTATGTACTCGATCCT	alt_5988_new	0	0	0	0	0	0	0	0	0	0
GGTCGCGCCATATTAT	alt_5988_new	33	74	28	26	64	31	72	17	76	23
GCTTGTTCAGCGCCTG	alt_5988_new	50	98	74	68	111	60	105	57	122	53
TTGTACAATTCATAGT	alt_5988_new	23	28	25	13	43	19	26	13	20	16
GGACCTATCGTTTTGA	alt_5988_new	1	4	4	6	5	2	10	4	7	1
CTGCTGGGCACCGGCT	alt_5988_new	0	0	0	0	0	0	0	0	0	0
CGTGGACTGCGGCGCT	ref_5622_new	38	63	45	41	52	34	62	32	73	46
GGAAGAAGCATCATGT	ref_5622_new	7	7	13	9	4	4	22	8	12	6
TAGATTTCCAAAGTTC	ref_5622_new	0	0	0	0	0	0	0	0	0	0
AGGCATCTGCCAGATG	ref_5622_new	13	23	16	17	16	15	28	9	22	12
CTCTTATGAGTCGTAC	ref_5622_new	174	368	177	189	361	168	334	160	337	155
CTTCTGTTGCAAGTTT	ref_5622_new	139	192	167	114	198	114	218	124	206	117
CAGCAGCGCGTTGCAC	ref_5622_new	113	191	134	116	212	123	241	123	222	98
CGAGTGCTTATGTTTA	ref_5622_new	0	0	0	0	0	0	0	0	0	0
ACATCCACCTATGACC	ref_5622_new	33	72	34	31	84	24	88	29	97	31
CTGTCATCTGCGGTCG	ref_5622_new	3	17	8	11	18	6	20	6	15	4
GCGCCACTGAATGTAG	ref_5622_new	20	29	31	19	32	17	33	12	34	13
TCGGATAGAGCCGACA	ref_5622_new	15	18	21	15	11	18	13	11	21	11
ATCTCATGCAGGACAG	ref_5622_new	0	0	0	0	0	0	0	0	0	0
AGGGTACGCTTCCCGA	ref_5622_new	5	7	14	8	12	12	16	4	13	6
GCGGGTGTGTCAAACC	ref_5622_new	22	56	34	32	45	38	52	27	58	30
GTGTGTATTACCCCTA	ref_5622_new	23	61	43	32	67	27	89	37	64	36
TTGTTCATCCCCACGT	ref_5622_new	25	22	12	24	33	9	29	11	25	9
ACAATCATTTCCCCTC	ref_5622_new	0	0	0	0	0	0	0	0	0	0
CCGTCGTATCGACCCG	ref_5622_new	0	0	0	0	0	0	0	0	0	0
TCTATCATCGTTCAAT	ref_5622_new	60	84	59	66	57	31	66	42	75	44
CAATCCAGAGGAGGCT	ref_5622_new	1	7	3	8	2	5	4	2	9	8
CAAGTGCTCTTTCACT	alt_5622_new	12	24	18	12	25	18	36	18	27	13
TGGGGAAGATTGCGCG	ref_5622_new	40	72	87	64	93	54	91	52	84	55
TTTTAATGTAGATATC	ref_5622_new	0	0	0	0	0	0	0	0	0	0
TCGGCTCCTGCCCGTT	ref_5622_new	16	14	19	18	18	17	21	9	26	10
GACATATCAGTATTTT	ref_5622_new	117	208	144	140	190	138	214	117	202	96
TTTTTGACCAAGTGGG	ref_5622_new	24	39	19	21	37	28	41	11	52	13
ATGCGGCAGCTCTTCG	ref_5622_new	6	12	9	5	10	5	7	6	7	3
CTTTTAGGACACCTGT	ref_5622_new	0	0	0	0	0	0	0	0	0	0
CTCTTGGACTGGGCAG	ref_5622_new	0	0	0	0	0	0	0	0	0	0
TGATGTTCTGTGGAGG	ref_5622_new	23	49	19	28	34	20	31	25	30	27
GACGCCATCGGGGTAT	ref_5622_new	39	78	58	37	79	44	84	38	95	28
ATTAACCTCGTTAGAT	ref_5622_new	0	0	0	0	0	0	0	0	0	0
TATTTCACCTATATCA	ref_5622_new	19	26	16	21	19	27	25	20	40	16
TGACGGACAGTGCGCT	ref_5622_new	48	53	46	31	55	35	50	18	56	36
TGGGCTCCCGAATCTT	ref_5622_new	0	0	0	0	0	0	0	0	0	0
GTTTACCACCTAGGAC	ref_5622_new	0	0	0	0	0	0	0	0	0	0
GCCAATACGCCGCCTC	ref_5622_new	7	13	4	5	16	7	11	4	15	6
CGGTGCCTTTCTGCTT	ref_5622_new	10	7	11	11	6	7	6	4	9	10
GTCAGCCAATCGAGTC	ref_5622_new	15	50	22	12	46	20	56	21	52	13
AATCAACCTTGCTCGA	ref_5622_new	0	0	0	0	0	0	0	0	0	0
GAGAAGTTTCATTAAA	ref_5622_new	23	26	15	11	27	11	21	15	30	15
CCCGAATGCTCTTATG	ref_5622_new	112	199	156	132	202	114	239	120	217	104
CGGTCTGTCGGATCCC	ref_5622_new	167	320	189	144	328	116	284	142	270	168
TCACTGCTCTCTTTAG	ref_5622_new	47	58	57	38	68	41	59	56	65	40
GTATGTGCCCTCACAG	ref_5622_new	10	13	11	13	16	7	17	7	10	12
GTCTTGGGTAATAATG	ref_5622_new	6	10	4	13	10	6	15	17	6	14
CGTCCGATCTAGCCCC	ref_5622_new	6	8	3	5	6	3	10	2	7	3
GCTTTCGGTCAGCGTC	ref_5622_new	0	0	0	0	0	0	0	0	0	0
TTGTTTCCGTGCTTCG	ref_5622_new	84	106	69	76	111	79	130	63	140	65
TGCGTCTTGCCCGACA	ref_5622_new	0	0	0	0	0	0	0	0	0	0
CACGGGCTATCTAGAA	ref_5622_new	0	0	0	0	0	0	0	0	0	0
AATTTATAAGAACATA	ref_5622_new	35	41	48	31	46	37	64	27	50	31
TTGTCGCGTGGTGCTT	ref_5622_new	39	50	47	44	74	50	67	38	69	36
TCGCGTCCAATCAACT	ref_5622_new	6	3	2	0	4	4	3	1	5	4
CCACAGGCAGATTGTA	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
GTAATTTAACGGTGAT	ref_5061_fdr	55	70	65	48	73	51	86	37	85	47
TTGTGCAGACGCCTTA	ref_5061_fdr	10	15	14	17	16	8	11	6	20	5
TTTATACGCTCGTCGT	ref_5061_fdr	71	87	79	74	93	49	108	52	97	56
CGGCCATAATCTCTTT	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
ATGGACGCCGCAGCCT	ref_5061_fdr	17	22	15	18	16	13	18	9	22	9
ATACCAGGGGATGAAC	ref_5061_fdr	10	25	14	7	20	13	16	9	38	14
ACCTGCGCGTGTATAG	ref_5061_fdr	18	25	25	18	38	11	32	18	45	10
CTCCGCACCCAGCTGG	ref_5061_fdr	2	2	0	2	0	0	2	0	1	1
GGTATTTCCCGCCGGT	ref_5061_fdr	2	1	3	0	4	0	2	0	4	2
AAATTTTGGTACTTGG	ref_5061_fdr	28	51	34	25	39	17	43	21	25	22
TAAGCGTGGCATTTAC	ref_5061_fdr	8	5	11	8	2	8	4	3	2	4
GTTAATCATTTGTCAA	ref_5061_fdr	113	114	96	90	161	79	155	85	162	92
CGAGGCTACTTTGGCG	ref_5061_fdr	7	7	7	5	10	7	17	12	7	10
GGCATCCCCAAAGTCG	ref_5061_fdr	79	99	70	63	116	61	119	43	101	53
TTACTCCCCCAACTTT	ref_5061_fdr	29	59	43	33	45	26	53	26	57	34
CATCCGTTGAAATTAA	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TCCACAGTATTTGGCC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
GCACTTGTCCGCTCAC	ref_5061_fdr	18	22	26	18	24	11	19	14	35	14
GGATCAGTCTCGGTGT	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TCTCCTCACGGTTAGG	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TACGTATCAGAACCGG	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TCCTATTCAGATTCCT	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGTGAGCATACAC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTTTGCAACCCAT	ref_5061_fdr	20	37	30	32	28	19	36	29	31	15
AATTTCAGTGTTCGTG	ref_5061_fdr	25	46	28	32	50	32	57	36	65	24
TGGATTGAACCTCCGC	ref_5061_fdr	33	29	27	31	39	31	45	30	31	12
ATATTCCTCGATTTTC	ref_5061_fdr	123	170	153	116	155	110	171	130	156	109
GTGGATGCATTTGGTC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TGACCACTTCTTCCTA	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTTTTCGGTAGTC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTCTGAGTATCGT	ref_5061_fdr	16	17	16	12	17	20	13	14	20	10
GGTTGGGTGTACTTGC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTCCGGTTATAAT	ref_5061_fdr	83	147	103	83	116	83	156	76	151	59
AGATAGACTGGCCCGC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
AGATGTCATTTTGTGC	ref_5061_fdr	173	325	221	219	280	205	286	148	346	177
TTTTTAATGCGGTATT	ref_5061_fdr	49	87	76	67	85	51	101	76	92	54
ACAAACCTCAATTTGC	ref_5061_fdr	35	61	30	38	64	30	56	26	54	33
CATCACCTTGTTGCCC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
CATGCATGATCCGGCC	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
CTTGATACTTCATTTA	ref_5061_fdr	1	1	1	1	6	1	1	1	0	0
GGTTTCCCGACTCGCC	ref_5061_fdr	11	16	22	16	21	19	14	13	20	16
TATTTTTTCAGGATGG	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTTAAAGTGGCGC	ref_5061_fdr	6	21	18	12	16	13	15	9	9	11
CTGCGCTATAGTGTTG	ref_5061_fdr	26	67	43	35	61	11	64	33	54	30
TTAACAACGTTGACCA	ref_5061_fdr	52	66	57	61	84	54	65	55	69	34
ACTCTGTTCGACCTTT	ref_5061_fdr	11	13	2	3	13	3	5	3	14	6
CTTTACCCGGATTCGC	ref_5061_fdr	35	40	37	29	55	38	54	39	49	26
ACCGTTCCGCTTGGGA	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
GCATCCTAAGGGCTTT	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
CCATTGGTATCATAAC	ref_5061_fdr	9	18	8	9	19	7	14	10	15	9
CATGCGTTAGTCGGAA	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TCACCCTCTTTAGCAT	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
ACATTTCCTCTACTTT	ref_5061_fdr	16	23	28	18	28	22	29	11	34	13
TCCCTACGCCATCTGG	ref_5061_fdr	8	17	13	3	11	9	10	5	21	2
CGTATGTCTTCCTACA	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTATCATTCTATT	ref_5061_fdr	113	155	133	115	147	124	196	97	203	100
TTATGACTAACATAGG	ref_5061_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGTTGGAGTAGTG	ref_5061_fdr	28	47	27	28	32	21	52	31	46	26
AGGGATGGTCCGGAGT	alt_657_negative	6	6	7	13	4	8	8	9	8	11
CGTTGTCTTGCGTCGG	alt_657_negative	41	17	38	37	17	34	22	37	29	28
GTACTCTGGCGGGAGT	alt_657_negative	99	73	91	87	70	86	77	64	81	89
GTCGGCTCACGGGGGC	alt_657_negative	0	0	0	0	0	0	0	0	0	0
CGTAACGTTCGCATTC	alt_657_negative	72	35	74	33	43	60	37	59	38	41
CATGTAGTACAATCCT	alt_657_negative	0	0	0	0	0	0	0	0	0	0
TCAGTGCACCTCCTAC	alt_657_negative	45	46	62	65	42	57	61	53	47	61
CAATTTTATAACCTGG	alt_657_negative	0	0	0	0	0	0	0	0	0	0
GCATTTCACACATTTT	alt_657_negative	0	0	0	0	0	0	0	0	0	0
CGGCTGGGATTCACAC	alt_657_negative	97	60	106	88	52	69	52	83	54	59
TACCACTCGTTAGCGG	alt_657_negative	0	0	0	0	0	0	0	0	0	0
ATCCTTTGAGCGCTTG	alt_657_negative	97	64	100	69	77	114	89	96	90	78
CCGCCCTATTCACTTG	alt_657_negative	16	11	21	8	12	5	7	12	17	4
ATATGTGAAACAGTAG	alt_657_negative	53	32	57	41	35	46	38	38	35	34
AAACCTGTTTTCGATG	alt_657_negative	195	165	305	223	161	196	155	223	172	173
GGCGTCGCCTATCCTA	alt_657_negative	10	6	9	9	10	7	6	12	4	16
TAGATACTCGAAGTTA	alt_657_negative	72	45	89	69	71	75	48	68	53	56
ATGATTAAGGAAGCCG	alt_657_negative	20	18	36	23	15	22	19	21	15	17
GACTCTGGTTCATTGC	alt_657_negative	0	0	0	0	0	0	0	0	0	0
CGGCTACAGTTCGTAA	alt_657_negative	6	0	8	5	4	2	4	3	6	1
TGCCGGGTAATCTAAG	alt_657_negative	10	0	4	3	4	8	3	3	5	3
CAATATTTCTTTGTCA	alt_657_negative	20	12	22	21	15	21	12	18	8	13
GCTCTGTCGCGCGTAA	alt_657_negative	5	4	10	6	3	3	5	7	4	7
TGAGTACTTCTTGGCT	alt_657_negative	75	42	89	75	60	52	44	61	31	54
TTACGATTATTTCATG	alt_657_negative	0	0	0	0	0	0	0	0	0	0
GCTCTGTATCGCACCT	alt_657_negative	42	38	45	43	25	32	37	27	45	33
TCATTTTTTATATTTC	alt_657_negative	0	0	0	0	0	0	0	0	0	0
GGGTAGTCAACCGGTT	alt_657_negative	72	41	85	72	49	73	55	85	67	71
TGCCCGGGGCCAAAGT	alt_657_negative	23	33	45	39	14	37	21	39	29	31
CATTTTTATAACCTGG	alt_657_negative	296	242	359	295	235	269	271	245	291	284
ATCACGCCTGGCAGGA	alt_657_negative	70	75	89	91	78	73	59	82	80	80
ATTAGAGCTCACTGAT	alt_657_negative	14	9	22	16	14	17	12	9	9	12
TAGCTCGGAGTTAAAC	alt_657_negative	15	12	15	15	11	9	7	7	14	11
TCCGTTTGAGGAGTAA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
TGCAGGTACAAAGTTC	ref_251_missing	81	83	76	77	113	78	100	55	103	60
TTATTCGGAATCGCGA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
AGTGAGATGTTTTCAA	ref_251_missing	3	2	1	4	1	1	5	1	1	5
CCCTATACCGTTCGGT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
GCTGCTCTATGTAGGA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
GAGCGCTATTCGCACC	ref_251_missing	18	24	16	17	13	11	24	14	30	11
TTTTTTTTTTGTCGGA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
TCCTTCGTCAAAGCTC	ref_251_missing	3	6	3	3	6	2	16	4	12	11
AATCCCGCGCTTCTTC	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CGCGCCGGCGACGGTC	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CTATGCCCGTGGAAAT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CGCTATATGTACCTGA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
ACTTTATGCTTCGCCT	ref_251_missing	5	5	3	9	7	6	8	1	13	6
AAAGGACTATATGTAT	ref_251_missing	7	16	11	7	12	9	8	4	14	3
GGTTTAACCCCCTTGC	ref_251_missing	0	0	0	0	0	0	0	0	0	0
TCGATCAATGTTCTTT	ref_251_missing	12	17	20	12	18	14	22	16	13	5
CTTTCCTTTCCCATAT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
AGCCAACTGAGTGGAG	ref_251_missing	21	55	36	26	52	22	35	26	37	21
GTGTAACCATACAAAC	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CCACTGGCTGTTGCCA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CCAACAGATTATGCGT	ref_251_missing	3	10	4	4	15	4	9	4	10	4
TCGCAGTTCACTGCTA	ref_251_missing	22	27	18	23	24	25	15	22	16	24
TCTAATCATCTTTTGA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
AGGAACCGGTCTTCGC	ref_251_missing	0	0	0	0	0	0	0	0	0	0
GTCATCGCTTTTTTGT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTTGGTGGGCCA	ref_251_missing	8	13	13	18	12	8	15	5	18	4
CGCGTTGCTCCGCTTA	ref_251_missing	21	19	28	13	12	4	22	5	8	18
TCTGATATATCGGATG	ref_251_missing	0	6	3	3	8	1	1	6	5	4
GGTCTTGTATCTAGTT	ref_251_missing	6	9	14	7	13	11	7	7	10	5
TGGGGGCCCCATCCGG	ref_251_missing	8	7	12	4	6	1	4	7	5	6
CATGAACACTCTCTTG	ref_251_missing	0	0	0	0	0	0	0	0	0	0
TCGTAGTTACGGTTGC	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CTCGGCCAGTCCGGTA	ref_251_missing	0	0	0	0	0	0	0	0	0	0
GAACGCTAGTAATCGC	ref_251_missing	6	2	4	0	2	3	1	2	6	2
CTTGTAGCGGACTTCT	ref_251_missing	29	40	27	27	24	23	27	25	37	20
ATCGTTCACGTATTGG	ref_251_missing	41	51	46	31	45	38	48	27	46	31
GTGGTAAACACTAGCT	ref_251_missing	8	2	7	7	9	2	13	6	8	4
CCTGGTTATCAGGTTA	ref_251_missing	35	37	38	49	38	15	36	24	40	15
CCCATCCTTGAGATGC	ref_251_missing	0	0	0	0	0	0	0	0	0	0
GGTTCATGTGCTACGA	ref_251_missing	0	0	0	0	0	0	0	1	1	3
CTATTTTAGATCATAT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
GGGTGCGTATCGCGCT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
TGGGGCTCGCCTTGCC	ref_251_missing	16	24	18	22	15	16	20	10	34	17
ATCCTTTAATATTTTT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CGCTGTCCTCTAGTGG	ref_251_missing	0	0	0	0	0	0	0	0	0	0
AGACGATGATTGCATA	ref_251_missing	3	7	4	4	5	5	6	3	8	0
TTACCGTTGTCTACCC	ref_251_missing	21	50	44	39	49	33	53	35	40	20
AGAACATGAATGCCGC	ref_251_missing	35	28	24	18	49	28	34	40	36	21
GCTGCTATGATTTCTC	ref_251_missing	6	8	6	9	24	3	7	21	12	5
TGTGTCTCCAAGCCTG	ref_251_missing	28	21	30	33	40	23	41	26	36	26
TGGATGCTTCTTGGCC	ref_251_missing	3	9	3	4	11	2	10	2	8	4
TCATGCGCCCTAACTC	ref_251_missing	18	42	30	30	38	24	35	31	31	24
TACTGTGGCTAAGCTT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
CACGTGCTATTGAGAT	ref_251_missing	42	47	26	42	45	26	59	40	61	24
GCCTGCAGCTTAAATC	ref_251_missing	4	1	2	2	1	3	0	0	2	2
TGACCTGAGTCTCACT	ref_251_missing	0	0	0	0	0	0	0	0	0	0
TGTATCGACCCTAGTT	ref_251_missing	10	25	11	13	20	15	28	24	28	5
CTCTAGCCTCTTCCTG	ref_251_missing	5	12	2	2	16	5	11	2	18	2
TGGTGACAATACTCAT	ref_314_RC	33	25	48	46	28	44	33	31	46	35
CTGTCTTTAGACGTAA	ref_314_RC	67	79	66	73	74	59	69	56	59	53
CTACCACCCGGTTGGC	ref_314_RC	16	21	34	14	20	10	21	16	13	24
CCTCCTAGATCACACC	ref_314_RC	23	8	12	10	16	18	13	14	9	9
TAGGGGGGTTTCTGGT	ref_314_RC	0	0	0	0	0	0	0	0	0	0
GTCCCTCATCCTATCG	ref_314_RC	9	15	11	17	9	11	18	12	6	11
TGTTTCTTCATGGGCC	ref_314_RC	17	8	12	6	6	10	8	6	8	7
AGATGCGTTCTGGGGC	ref_314_RC	153	158	198	187	178	173	180	165	155	146
TGTTTTGCAATGGTCC	ref_314_RC	29	38	36	32	38	29	31	20	40	29
CCTATGCCAATAATTC	ref_314_RC	2	6	2	2	6	6	3	4	3	4
CAGCCGCCCCCTCGTC	ref_314_RC	0	0	0	0	0	0	0	0	0	0
TATTGTTCTTTGGAGT	ref_314_RC	44	48	58	41	32	39	51	40	50	35
ACTCGACAGACCCCTT	ref_314_RC	0	0	0	0	0	0	0	0	0	0
CAGCCGACCCCTCGTC	ref_314_RC	0	0	0	0	0	0	0	0	0	0
TTTTCCCGTTGTTCGC	ref_314_RC	129	90	133	92	76	107	94	75	87	103
GTCACGGCTTATCACC	ref_314_RC	0	0	0	0	0	0	0	0	0	0
ATTCAGGTCTGTTTAG	ref_314_RC	37	51	54	34	59	40	44	45	42	42
GGTCTTTTCTCTTTTC	ref_314_RC	56	27	68	46	35	51	31	37	28	33
CCTGGGCGGCGGATTT	ref_314_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTATACGTCCAG	ref_314_RC	5	6	10	5	6	6	8	1	11	11
TGGATACTCCTTCTCT	ref_314_RC	25	20	29	29	17	25	12	29	26	8
CTCGGCTATCTGGAGT	ref_314_RC	18	18	11	7	9	17	10	11	15	14
GGCAATCACCAATTGC	ref_314_RC	56	39	79	55	54	53	47	44	48	38
AATCTTTAGCATATCG	ref_314_RC	8	9	17	11	8	7	5	6	8	2
CGGCATACTGATGTTT	ref_314_RC	0	0	0	0	0	0	0	0	0	0
TGATGGTATCGATAGC	ref_314_RC	80	86	123	81	90	81	75	79	89	86
TCCATGGTTCTTCTGG	ref_314_RC	75	83	105	76	79	63	90	80	75	66
ACATGAGCTTCGCCTC	ref_314_RC	57	58	69	65	50	58	57	53	67	46
ACTTGCCCGAGAACTA	ref_314_RC	20	29	14	23	19	24	23	20	21	20
ATTTATACTCGCATTT	ref_314_RC	13	15	8	15	5	13	13	12	10	10
GCGTTGCCTCGTAATT	ref_314_RC	60	66	93	84	85	91	76	73	71	65
TTAAGCCCGAATATTT	ref_314_RC	107	93	117	74	71	92	92	96	82	83
TAATTTAACACACAAG	ref_314_RC	0	0	0	4	1	0	0	0	0	0
CAATGGCCTCGGAACC	ref_314_RC	47	37	78	70	35	61	54	64	44	42
CTGGTGACCCATTATG	ref_314_RC	21	11	20	15	23	16	18	13	16	14
ATTTTAGTTCGTGTTT	ref_314_RC	28	17	24	22	18	23	26	22	20	18
AATATACTTTGAGTGC	ref_314_RC	79	81	104	112	90	91	103	100	77	109
TTCTGCGAAATTCTCT	ref_314_RC	104	85	84	92	90	78	79	73	104	81
CTGGCATTGGGGTCCA	ref_314_RC	34	36	49	44	45	38	46	32	38	40
GGGTCGATCATCAGCC	ref_314_RC	13	19	18	12	16	8	18	11	14	14
ATTGCCAACATCATAG	ref_314_RC	60	69	96	77	79	73	76	71	63	67
ACTCCTCGTATCCCGC	ref_314_RC	59	68	67	68	70	59	54	46	59	53
TTACACACGTTGAATT	ref_314_RC	4	5	6	5	6	6	11	5	16	10
TCCCGCGTGGTAGTAG	ref_314_RC	123	118	141	126	121	124	112	122	128	110
TTCGGTGTGCCCGGCA	ref_314_RC	85	95	94	83	84	56	100	64	81	77
GGGCATTGTCTGTCCA	alt_979_negative	0	1	1	3	0	3	0	2	1	1
ATCAAGTGTTAAGTAG	alt_979_negative	63	55	78	57	39	52	36	53	38	64
ACAGAATAGGTTTGCC	alt_979_negative	42	36	69	44	39	38	34	41	46	52
GTGATAATGTAGAGGT	alt_979_negative	18	10	5	8	12	8	12	9	11	16
TCGCTTTGGTAACTGT	alt_979_negative	18	11	19	14	17	17	15	7	12	21
ATTTATACATTTCCAT	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TCTTTTTATAACGGTT	alt_979_negative	0	0	0	0	0	0	0	0	0	0
GTGCCATCCATTACGA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
ACGCTCTATAATTCTA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TTCTATTTGGTCGGTA	alt_979_negative	103	56	122	115	79	80	75	81	68	79
TGTGTACGGTGCCTTG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
CTACCCGACGTTGGCC	alt_979_negative	59	87	83	65	62	61	97	67	91	53
TGGGGAGCATTCATAA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
AGTATTTACTTAGCGA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TTTCTTTGTCTGGTCG	alt_979_negative	356	211	420	362	248	341	272	313	231	287
GGTATGGATATGGTTG	alt_979_negative	116	99	153	116	87	107	87	114	106	88
ACCGTCCGTGCCACTG	alt_979_negative	95	53	91	66	73	68	58	53	69	54
AATCTTGGCCAGCTTT	alt_979_negative	41	33	49	35	24	23	40	40	36	51
GTCCTATAATACTTGC	alt_979_negative	37	28	33	24	28	35	28	33	16	34
TTGGCTTGCGATCCGT	alt_979_negative	12	15	15	12	8	8	8	10	17	10
CGTGGTGACGACGCGT	alt_979_negative	325	219	405	341	195	299	225	252	230	290
TAGATTATGCTGACGC	alt_979_negative	5	3	6	6	3	5	2	4	4	5
TCTTCAGTTTACCGAT	alt_979_negative	44	25	50	41	22	37	26	33	22	32
CGGTTTCACGTTTCAC	alt_979_negative	10	11	14	11	9	14	18	14	14	14
CGAAATTTATTGTCGG	alt_979_negative	87	81	102	108	55	88	78	87	76	91
CATCTGGGTCGCGTCT	alt_979_negative	16	11	20	7	11	12	12	20	20	13
TCTCGTCACGAACGGC	alt_979_negative	83	65	123	102	48	78	61	98	66	78
CTTTAGGACAGTTTAT	alt_979_negative	0	0	0	0	0	0	0	0	0	0
AGTCCTTATTGTTCCA	alt_979_negative	20	13	19	22	14	28	7	21	9	13
CTTGTCGTTACCCCTC	alt_979_negative	9	8	4	12	6	5	8	14	8	8
TTACAGGTCAGTTAAA	alt_979_negative	210	178	225	196	143	209	164	163	187	165
AGACTTGGTGAGCAGC	alt_979_negative	59	51	80	68	60	58	44	68	52	56
CTCACTATCGAACCAT	alt_979_negative	0	0	0	0	0	0	0	0	0	0
GGAATCGGGGCTAGTG	alt_979_negative	68	48	102	98	57	70	66	78	73	55
TATACACGATCCTTCA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
GTGCGGGGCAAACCAG	alt_979_negative	32	23	26	24	20	17	22	24	17	31
TGCCCACGTAGATTTC	alt_979_negative	13	10	16	15	10	3	10	22	15	9
TGGTTGTAAGCCGGAG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TGAGTGAATTACTGTA	alt_979_negative	74	83	121	94	56	79	74	97	90	77
TTGTGAGCATTTCATC	alt_979_negative	45	56	56	49	28	47	44	45	30	47
GGTCTCTGTCTGTGAT	alt_979_negative	1	3	6	4	2	7	5	10	3	6
TTCTAACCATGTACAA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
ACTTCTGTATATTTTT	alt_979_negative	16	10	20	17	11	21	17	5	12	10
GCGGTTCTCTTGTACA	alt_979_negative	20	13	25	13	13	17	12	27	26	10
CTTCCAACCCCCTAGG	alt_979_negative	0	0	2	3	1	0	1	0	0	2
CGTACTTTTTACGAAT	alt_979_negative	0	0	0	0	0	0	0	0	0	0
GCCTTGCTTACATCTA	alt_979_negative	44	25	55	72	35	40	29	46	31	49
TTCCTCACCCGTGTCC	alt_979_negative	8	6	9	5	7	3	6	5	1	3
CATCGTCGCCACTGCG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
CGAACAGGTTGCGGTT	alt_979_negative	5	5	4	1	7	3	5	0	4	1
ACACTTTGGCTCCTTA	alt_979_negative	122	105	153	117	103	111	132	115	127	123
ATGGGCAAAGTGGTCT	alt_979_negative	36	22	51	35	20	22	18	13	28	16
GCGTGGTCGTAAGAGG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TGTATGCATTGTATGG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TCTCGTTATCCGTGCC	alt_979_negative	76	53	77	71	47	72	69	69	63	68
GGTCCTTGAGTTTCCA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TCGCTGAATCGGTAGG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
CACCTGGCTGTAGTTC	alt_979_negative	94	74	116	102	73	85	88	85	67	86
TAGTGAAGTTGTGGAG	alt_979_negative	57	43	87	72	51	59	54	71	50	58
TAGGCATTGGAATTTC	alt_979_negative	21	10	23	10	15	11	14	8	21	13
CTTGAGCGGTACGTCA	alt_979_negative	41	25	63	57	23	43	30	33	26	48
TGTTTAGCAAATACTT	alt_979_negative	58	62	84	68	55	54	71	60	62	63
CGCTTTCTTCTAAATT	alt_979_negative	76	52	88	74	54	67	50	57	55	68
TACATTAACCGGATGA	alt_979_negative	0	0	0	0	0	0	0	0	0	0
CTGGTTAATGCTGTCG	alt_979_negative	0	0	0	0	0	0	0	0	0	0
TGTTTTTTTACTTGCC	alt_979_negative	33	21	31	30	20	29	20	29	16	25
CGACATGCATAATTTT	alt_979_negative	0	0	0	0	0	0	0	0	0	0
GTTTACGAATTTAAGT	alt_979_negative	86	62	72	96	63	62	50	73	51	61
TCCTATGGAATTTGTG	alt_5065_RC	10	10	13	2	5	6	9	7	10	9
CTCCTAGCATCATGTG	alt_5065_RC	0	0	0	0	0	0	0	0	0	0
AACCACGCTTCTTTGA	alt_5065_RC	21	40	26	26	40	31	35	22	54	20
CCAGTAAAACTTTGAG	alt_5065_RC	24	33	33	23	54	26	51	25	58	20
AGCCATTATAAATGTC	alt_5065_RC	0	0	0	0	0	0	0	0	0	0
ATAGTTTTGGTTCCTG	alt_5065_RC	0	14	6	5	10	1	12	2	6	1
TAGATTTGTGTCCTTG	alt_5065_RC	54	99	60	71	82	53	104	46	97	48
AAGCCGCCGCGGCACA	alt_5065_RC	5	6	13	11	7	11	14	13	13	16
AGGCTTTGCCGGCGCA	alt_5065_RC	9	29	17	13	14	7	14	10	20	8
AGGCTGTACTTGGTTA	alt_5065_RC	35	42	55	24	49	43	52	37	52	46
CCTCCCCCGCGCGGAA	alt_5065_RC	10	13	15	14	12	5	11	8	12	19
TCTTAAGGCGGCATTC	alt_5065_RC	78	92	109	74	84	69	103	74	91	70
CCAAAGTAACTCTTTT	alt_5065_RC	50	92	56	44	81	59	68	50	85	48
AAAGGCGTTGGCGTAA	alt_5065_RC	40	46	49	48	59	46	48	35	62	41
GGAAGGCGGTGGGAAG	alt_5065_RC	0	0	0	0	0	0	0	0	0	0
TGCCTCGTTTTTATAG	alt_5065_RC	36	30	37	39	33	44	37	27	44	50
GTTTATCGACTCATAG	alt_5065_RC	17	34	18	11	29	16	16	14	24	16
ATCGTTTTATTTCTAA	alt_5065_RC	39	56	42	41	34	36	43	22	46	25
AGGTCGCGTCAGTCGA	alt_5065_RC	0	0	0	0	0	0	0	0	0	0
CGGTAACGCCCCCGAC	alt_5065_RC	9	8	2	4	5	0	11	1	11	2
GAGTGACTGTTTATCA	alt_5065_RC	34	44	38	31	48	32	69	35	56	37
GCCTCTCTATCGGTAG	alt_5065_RC	1	1	0	2	2	2	0	0	0	0
CATACGTGTCGTTCGG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GAAGGGGTGACCGACA	alt_314_fdr	10	13	20	15	8	12	10	17	16	13
TTAAGCGCGTTATATT	alt_314_fdr	39	27	50	25	25	35	31	28	40	30
CGCTTGTTATTTTTTA	alt_314_fdr	103	110	156	118	93	127	110	113	115	132
GGAACTTTCTTTTAGC	alt_314_fdr	21	11	25	21	13	16	10	13	10	14
ACCGTACATGACTGAT	alt_314_fdr	140	91	151	157	128	128	121	125	114	147
TTCTTTCATTTTTAAC	alt_314_fdr	23	14	24	17	13	31	23	23	21	25
GTGCAACTCTGGTATT	alt_314_fdr	57	47	85	65	47	55	51	54	45	66
CAGTCGGATACCTCAT	alt_314_fdr	18	10	18	10	12	16	8	21	13	17
GGTAGTTCACTGTAAA	alt_314_fdr	27	14	15	16	12	20	9	15	15	16
GATGGCGTAGAGGTAC	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTTTCTGTTTACGCCT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGCAGGTAAGAAG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GGCCATCAGCACTGCC	alt_314_fdr	3	3	4	5	2	2	1	2	2	3
CATCTTCTACTCAAAG	alt_314_fdr	34	14	38	47	30	32	32	33	28	44
CCGGGCCCTCCTGGGG	alt_314_fdr	49	53	64	52	43	52	71	45	54	46
CCTAAAACAACTTTCG	alt_314_fdr	178	155	258	210	149	196	154	191	147	189
GAGGTCTGGGCTCCCG	alt_314_fdr	26	9	27	33	18	23	15	22	23	17
TGATAAAGGGGGACTA	alt_314_fdr	10	12	12	15	9	8	16	12	8	6
TATGAAGCTATGGGTC	alt_314_fdr	20	41	26	25	43	27	45	29	45	23
TTCAATTACGCAGAGT	alt_314_fdr	29	11	27	15	18	20	16	16	14	21
AGATGTAGTCCGTACA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
TACATGCATGTTAACC	ref_314_fdr	120	114	170	136	124	134	135	136	115	97
CGTTAGTTTTTTCCGG	alt_314_fdr	2	1	3	6	5	9	8	6	5	6
TTGTAGACGTTGGTGT	alt_314_fdr	1	9	13	2	4	7	7	4	9	6
TCCACGAACTATATCT	alt_314_fdr	71	60	84	72	73	55	56	86	68	56
ACCAGCGATGTCTTTC	alt_314_fdr	27	25	37	33	15	22	27	27	30	25
CATAATGTATAGCCGA	alt_314_fdr	11	9	22	13	11	11	10	12	14	17
ATCTGTACGCGGCTCA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CCGTTCCCGTTCGAAC	alt_314_fdr	71	37	64	38	33	49	55	57	59	52
CGGCCTCACGTTGCAC	alt_314_fdr	90	78	123	79	100	106	79	93	87	78
TACACACTCCTCGCCA	alt_314_fdr	0	7	1	0	9	0	16	0	19	0
GCGCAGTCCTAGGGAT	alt_314_fdr	23	24	34	18	17	30	16	28	18	29
CATATTACTCGATATA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTCCTTCCCTAAA	alt_314_fdr	22	9	13	17	12	12	10	9	15	16
AATGGTCGTGTGTTCA	alt_314_fdr	75	42	75	62	47	53	35	50	56	50
GGGCTCCTGGGACAAA	alt_314_fdr	40	17	34	35	22	32	24	41	23	42
GCGCATGACAACATAT	alt_314_fdr	48	19	37	37	49	39	25	35	25	30
TTCTCTTCCAGACCCG	alt_314_fdr	15	15	25	20	15	12	13	22	12	14
GATCGTTCTGTCTGGC	alt_314_fdr	16	14	15	26	22	13	10	19	12	23
TTACCTATCAGGGTAG	alt_314_fdr	116	111	179	124	102	142	79	93	122	108
CAAATATAACCCATAT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
TCTGGCATTCTCCTTC	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GAGTGCATGAGGCGTG	alt_314_fdr	58	51	54	60	47	49	30	58	68	48
GGACTGCCGGTATAAT	alt_314_fdr	49	19	39	30	24	39	34	44	28	34
AACTTATGCCTGTTTG	alt_314_fdr	42	39	62	42	38	33	22	37	53	35
CTCTGCAGGACATATT	alt_314_fdr	11	7	12	5	8	7	12	4	5	8
TTACGGATTTTATAAA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCATGGTTTTTGG	alt_314_fdr	96	68	100	96	79	84	60	69	76	84
GTCTGCCTCTCAAATT	alt_314_fdr	95	86	105	90	80	77	79	90	73	97
GAAATAGAGGCAAGAC	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
ACGCAATTTTTACTCA	alt_314_fdr	16	12	23	22	13	18	12	16	11	12
ACCGACTGGGGGCGTC	alt_314_fdr	31	15	35	32	24	30	16	30	34	30
GACAGTAACATGCGGA	alt_314_fdr	160	105	186	189	120	145	97	141	113	144
AAGGTTAGCATCCCCG	alt_314_fdr	12	12	19	9	19	19	18	10	19	11
TCGGTTTTCTCGGGAT	alt_314_fdr	107	58	111	112	55	88	100	58	65	68
CTGATGTACCCGGAAT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGGACCACGAATA	alt_314_fdr	17	11	6	9	7	15	5	9	3	3
TATCGTCATATGTGTA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GGGCAGACTGAGGTGC	alt_314_fdr	112	94	139	123	115	112	101	106	110	89
GTCCACACGACACAAT	alt_314_fdr	16	12	13	17	7	15	11	12	8	12
GGCTTTTTTTGATCAT	alt_314_fdr	9	2	9	5	2	3	4	8	7	2
ACGCAACGTTCTGCTC	alt_314_fdr	32	20	39	44	22	30	37	28	29	29
GATCCGCGCACACCCT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCCAATTACGTTG	alt_314_fdr	127	121	197	139	125	154	121	139	118	145
ACAACGGGTTTACGTT	alt_314_fdr	42	47	72	67	48	60	42	50	42	58
TTCTACGAGGGGTTAA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
TGGGCGACTGTCTATT	alt_314_fdr	49	39	61	64	31	50	46	41	32	47
TAGTCTTCGGCGTTTT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCCTGGTTCGTAC	alt_314_fdr	61	59	84	49	62	50	63	46	72	58
GAAAACCGTCTGCATC	alt_314_fdr	71	52	89	70	56	62	55	61	47	64
GTTCCCTGTCTGCAGT	alt_314_fdr	14	17	24	18	20	22	19	19	18	19
GTATTGGCATTTAATA	alt_314_fdr	117	83	114	126	91	122	97	125	90	114
GATTATCAGGAGTATC	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTCTATAATATTG	alt_314_fdr	20	11	21	18	18	13	15	14	6	14
CGTAGTCAATTGGACA	alt_314_fdr	6	10	4	9	5	8	11	8	4	4
TCTTTACCGTAATACT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CTTCGAATGAGGATCG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CTTAATTAATGACAGT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAATCGGTAAACA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
AACGTCAGGCCATCTG	alt_314_fdr	4	10	9	6	6	7	0	6	6	5
ATTACTCTTGGTCTAG	alt_314_fdr	70	75	104	81	85	93	82	78	75	83
CAGAGACGTCGGCAAC	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGCCTTATCAAGT	alt_314_fdr	43	19	42	35	18	37	29	30	32	39
CCTCCTTCTTTCGATC	alt_314_fdr	21	12	9	14	11	7	8	7	20	7
ATTTAAGAGCCGACCT	alt_314_fdr	38	29	42	31	28	35	19	36	32	37
ACCTCGCCTTGCGCTA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
TACGATAAAGTACTAG	alt_314_fdr	39	17	30	40	21	26	34	21	19	24
GTTTATGTTTAAATTG	alt_314_fdr	50	44	79	61	43	66	39	58	47	43
AGGGTGCTTTTTTTTT	alt_314_fdr	11	7	6	9	2	6	7	4	8	9
CGTGTTTAGTCTGGGA	alt_314_fdr	87	54	73	96	61	63	51	79	63	54
TCCGAGGCCTAACTAA	alt_314_fdr	1	12	7	7	7	1	4	5	5	6
CCACCTAGGGCTGTCG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTGACTAGGATCTTTA	alt_314_fdr	34	34	81	57	36	58	47	54	37	54
TAGGGCCTACGGGTTG	alt_314_fdr	6	3	12	9	6	4	10	6	4	7
AGCTCTCACCACAGTT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
ACTAGTCCGAGTCACT	alt_314_fdr	21	13	25	23	15	18	18	24	20	20
CTGATAACCATCTCCC	alt_314_fdr	34	19	50	29	23	25	20	42	29	33
CCATTCCCGCCTTGGA	alt_314_fdr	211	120	237	220	103	176	113	174	132	190
CACCGTTAGCCAAAAT	alt_314_fdr	12	21	24	28	18	17	14	22	16	18
GAGTTTCTTAGGCTGT	alt_314_fdr	15	17	30	39	23	20	16	18	16	22
AGTAAACTAGCTCATA	alt_314_fdr	20	12	19	25	13	13	18	25	12	20
CAACTTCTGTGCCTGC	alt_314_fdr	8	4	8	5	4	7	4	4	7	4
TCCATCTTCATAGTAG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CAGGAGCTAGCGTAGT	alt_314_fdr	58	31	60	55	51	58	44	40	54	44
TGTTTCTTGCGATTCC	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGAGTCTCATCAG	alt_314_fdr	50	42	55	50	47	53	46	37	38	49
CTATACTGGCGGCTAT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CAATCTATATGCTTAA	alt_314_fdr	21	13	17	21	16	9	19	13	13	31
CTAACTGTATACCTAG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
AACTTTAGTGGTGTAT	alt_314_fdr	19	20	30	31	19	23	25	19	15	17
TCGAAATACGGGGTTC	alt_314_fdr	3	0	2	1	1	1	2	2	0	0
ATCCTCTATCCCATTC	alt_314_fdr	0	0	0	0	0	0	0	1	0	0
GGTCACTAGCGGCAGC	alt_314_fdr	16	13	8	15	26	13	21	21	20	10
CGTCCTCTTCGCCTTA	alt_314_fdr	31	20	42	31	26	30	27	24	26	32
TGCGTACCTAGTCACT	alt_314_fdr	30	53	64	44	50	47	47	41	40	58
CTTTTTGGCCCGGGCA	alt_314_fdr	44	30	48	34	35	60	40	51	31	53
CACTTGTGACCGACTT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
AGAGAAGTTTTCGGTT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
AACAGAAGCACTGCCA	alt_314_fdr	26	16	39	33	20	34	18	29	26	28
TGTACATGTCCCTCGC	alt_314_fdr	51	55	48	47	65	31	72	35	57	47
TCCGTTGTTGTCTGTC	ref_314_fdr	19	16	25	11	17	8	27	17	28	18
ATGTGTTACACCCGAG	alt_314_fdr	32	13	20	27	16	13	16	14	13	15
CGTTGATAACTTATTT	alt_314_fdr	131	95	144	109	71	120	85	100	96	102
CTTTGAGGCGCTGAAC	alt_314_fdr	8	7	13	7	4	4	3	10	5	2
CGGGCCACTTAGCGTG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTCCCTGCATCGGCCT	alt_314_fdr	8	10	11	6	11	10	1	12	2	4
CTCGTAGGGAATTACC	alt_314_fdr	15	14	6	9	7	8	4	5	7	11
TACAGGCAGGTGGTAA	alt_314_fdr	30	9	45	33	31	25	22	25	28	25
TGCTTTTGTGGGGGAA	alt_314_fdr	29	27	39	15	20	24	21	14	17	22
GGGCTTCCTTTATGAA	alt_314_fdr	53	47	54	53	26	54	35	43	34	37
CTCACCTGCTGGCCCG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CTAGAAGAACGCCTAC	alt_314_fdr	13	5	9	6	5	9	4	9	6	12
TTTATAATCTCGATAT	alt_314_fdr	61	30	66	52	25	55	41	62	41	55
TTCTTGACATACCTCT	alt_314_fdr	9	10	15	7	7	5	9	8	8	3
AAGTTCATCTGTCATT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
AATTGATATGTCGCCG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTTAATTAGGGGTGTC	alt_314_fdr	15	7	20	26	15	31	18	20	11	34
AGGTAATGGCCCCTTG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CGTAGGAGGCGCGGTT	alt_314_fdr	17	23	21	30	13	18	14	19	19	16
GCGCTTGTCTCGCATC	alt_314_fdr	13	11	13	27	14	17	12	14	15	21
GTTAAATGGATTTTAG	alt_314_fdr	16	11	25	13	15	24	28	33	20	26
AGTTGGGGTCCGCTTG	alt_314_fdr	83	68	108	91	76	75	62	79	73	86
TTGGCTTGTAACCAAT	alt_314_fdr	29	27	43	32	24	32	24	38	19	27
TGCTAGCGCAAACCTG	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
ACGCGGTTATTATGTT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CTGTACTTTCCATAAT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
CTGCATCCCCCCAGTT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTTCGTACGGATG	alt_314_fdr	42	35	37	50	38	30	38	25	70	33
GAGCAAGCGCGTTAGT	alt_314_fdr	67	52	89	64	52	61	45	67	58	53
ATCATCAATATTTTGT	alt_314_fdr	24	9	38	25	18	23	15	18	18	32
CTGTTTAGCTGAAAAA	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
TATTTGCTGCTATAGA	ref_314_fdr	15	16	26	14	18	16	19	10	18	14
TGTCTTTGGGGTTTTC	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
AACCGGCGTGTGGTAG	alt_314_fdr	47	32	67	40	40	40	32	46	37	51
AGGCCCGTAAAGGGCT	alt_314_fdr	38	28	57	39	35	32	26	36	36	38
TGCTGGCAAAATGTTT	alt_314_fdr	0	0	0	0	0	0	0	0	0	0
AGCATGCACTTTTAGT	alt_314_fdr	60	34	72	76	38	48	44	57	48	50
GTTGCACTGCCCGTAA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CTTTGTTCCTTTTTCT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TAGAGTTTTATTCTAC	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ATCTTACTCTATGATT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ATGCTAATATAAGTCA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TTTCAATTATTTGGGT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GAGCGCCAGAACAGTT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CACCTTGTAGGACAAG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TTGCGCTTGTAGGTCG	alt_896_missing	11	13	11	8	27	9	17	16	23	12
GGTAACCCAACCTTAT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CTATCCGTCACGGTAT	alt_896_missing	6	19	5	10	11	2	16	3	11	5
CCGCGCACTGGTTTCC	alt_896_missing	4	2	1	2	10	1	3	4	4	4
ACTATTGCTTTCCTAT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
AATACTGATTAAAGTG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTAAGTTATGAA	alt_896_missing	29	69	35	45	46	39	53	41	73	30
ACTTGAGCGTCGACCG	alt_896_missing	17	15	15	20	26	14	32	10	12	9
CCGGTCAATCGTGCAT	alt_896_missing	2	11	1	2	8	2	12	2	11	2
CAGTTTAATTTTAATA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GGATATCCTTGGCCGA	alt_896_missing	4	10	4	1	8	6	9	6	7	3
CCAAGTGAAATTATGT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TGACCCATCAGCAGCA	alt_896_missing	3	5	5	2	3	1	4	3	5	3
TGTTGTCTTGCGGACA	alt_896_missing	38	33	34	23	39	33	45	17	39	25
AGTCCATCGCCGCATT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CCCTTGAGGCCATATG	alt_896_missing	18	36	33	29	38	26	42	20	43	17
CCTGTAGTCGATGAGC	alt_896_missing	20	7	14	9	13	8	11	2	10	8
GCATCCTCGCCCCCGA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TAACGGAGTTCTCTGA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CTATTTGGCGTTTGTT	alt_896_missing	2	3	1	1	2	3	6	0	12	1
TGTTTCCGTTATCACT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CTTGGGACATAGGCAG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GTACGATATTCTCGTC	alt_896_missing	22	48	17	18	39	22	41	30	32	21
TTTGTCCTCTATGCGG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TTGATCTCGAGTGTAC	alt_896_missing	25	29	23	20	37	17	24	16	37	12
CCCCATATCTGCCTTC	alt_896_missing	2	13	2	0	17	1	17	2	30	1
TGCGCTTCGTTGCGGC	alt_896_missing	49	83	47	54	76	47	78	53	89	44
GCAGTTATTGCGCTAT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTTCGATTCGGG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GGCAACGGATGAGCTT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
AAATTTCAGGCACCGA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TTTGAGCTGGATACTT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ATATTGGCGTACTCTG	alt_896_missing	41	59	49	35	63	42	79	37	68	25
GTCAGCTAACGAACAT	alt_896_missing	6	8	7	6	8	6	8	4	9	3
GTTTCCACGCGCGCCT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CGTCGTAACGGCGACC	alt_896_missing	0	0	0	0	0	0	0	0	0	0
AATGTCAATCAACAAC	alt_896_missing	71	134	93	81	127	78	112	78	114	70
GCTGTCTCACTTGCTT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TATCCGTGGTCTATGC	alt_896_missing	4	15	9	6	4	8	14	2	10	8
GTACGATACCGATTTT	alt_896_missing	10	17	14	10	39	18	24	12	36	13
CTCTGGCGCGTCCAAA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
AGCTGGGTATGACTTA	alt_896_missing	1	1	1	2	1	0	0	5	3	0
GTTCTATTACCGTGCT	alt_896_missing	0	8	2	6	4	2	15	2	10	5
GGTGCGGCGCTGCGGC	alt_896_missing	16	20	8	5	8	15	13	16	19	9
TTTGATGCCTTCAGCA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GTGAGTTAAGCCCCCC	alt_896_missing	10	15	5	2	10	3	7	4	9	8
GGGATGTTTTTCCGAG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ATGGTTGGTTTTCTTA	alt_896_missing	2	8	3	7	3	0	6	4	5	3
GCCCTTCGGACTTCGC	alt_896_missing	2	0	2	0	0	1	1	3	1	0
CATATCTACCGGTGCC	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTTATTTCGCGG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GCGGCTCAATATGCTG	alt_896_missing	10	15	16	11	15	13	22	9	15	8
GTACAGTTGGCCTGAG	alt_896_missing	16	21	13	10	20	14	30	14	27	7
GATTCCAGGGAAGGCA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TGAGTAGGCTTTGGCT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TCATCTAATTTGTTTC	alt_896_missing	14	24	20	11	28	20	24	17	22	11
ACCCGTGTAAGAACCA	alt_896_missing	20	74	28	20	54	21	73	16	68	14
ATCGTCGCTGGGTAAA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GTGGCTTGGGAAATAA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ACCCCAATTCCGGCCT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GTCACCGAAGCTAGAT	alt_896_missing	13	17	22	18	32	13	22	6	18	10
TGAGTTATGCAGCCCA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CATCTCGCCCGCAGTA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ACTCACTCCGCCCCCT	alt_896_missing	2	8	12	9	13	1	14	4	9	6
ACAATACGTAATGTTC	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GATACCCACGTACGAC	alt_896_missing	2	2	2	1	0	1	5	0	1	0
TTCGGCTCCCAGCGCT	alt_896_missing	3	7	6	5	11	5	7	6	13	4
CTGGGCAGTATAGTTT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GAGCTTATCTCTGGAG	alt_896_missing	25	30	21	15	34	14	36	15	23	25
CCCTACTAGGCTACCT	alt_896_missing	18	14	12	8	27	9	27	16	38	8
GTTATTTACATTTCGG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TGTCCCTCGATGGGAC	alt_896_missing	61	89	69	61	104	50	90	70	100	51
CAAAATCTAACCAAAC	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TACATGACCCCCGGGA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ACGGTCTTGGTCGTCA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
AGTGATTATTGGATTT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
AAGTGTGCGGGGGCTT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
AGGTCTGAGTTTGACA	alt_896_missing	3	9	3	8	9	6	16	10	13	2
TATCGCGGTTCTGACT	alt_896_missing	7	4	3	2	5	3	5	4	8	4
CGGGGGGGGGTTGGGT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CAACCTGGGCCCGGAT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CCGACCCCGTCAGGCA	alt_896_missing	6	14	11	7	17	3	11	6	11	3
TCAGAACCGGCTTACA	alt_896_missing	7	7	11	9	23	5	22	2	9	10
AGTTATATATCGAACG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TCTCCACCACCTCTCG	alt_896_missing	3	10	7	4	7	6	12	7	11	4
AGGCTTTGCCGTCAGT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GAAGTCCCAAGCGTGA	alt_896_missing	13	22	12	7	19	16	18	12	25	14
CCTGCTACCATAAAAC	alt_896_missing	18	38	17	22	38	14	33	15	56	16
CCAGCCGTATATGCAT	alt_896_missing	13	51	29	12	35	22	45	22	31	14
AGGTTTGATTAACCTA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
ACTTTGGCTAGGGGGA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GCCAGTGCGAGGATCT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CTGTCTCAGGCCTATA	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TCGGGTCTTAGCGGCT	alt_896_missing	0	0	0	0	0	0	0	0	0	0
CGCTTGTCACTTGGTC	alt_896_missing	0	0	0	0	0	0	0	0	0	0
GTGCTCGGTTTGCTTG	alt_896_missing	0	0	0	0	0	0	0	0	0	0
TGGACAATATGGCTAG	alt_896_missing	13	44	36	23	32	17	35	29	49	22
GTCGCGCAAAGTACGG	alt_896_missing	9	18	12	9	18	6	18	7	19	10
AAACGGATCCACTCAA	alt_896_missing	0	2	2	0	1	1	0	1	1	0
GTGTCATTGTCTCGTA	alt_5616_new	0	0	0	0	0	0	0	0	0	0
TACGATTCTTGAGATT	alt_5616_new	69	96	87	77	110	69	96	58	112	63
GTGGATATTTGACGAA	alt_5616_new	0	0	0	0	0	0	0	0	0	0
ACTGAAGTCTGTTTGC	alt_5616_new	0	0	0	0	0	0	0	0	0	0
GGTTTTTATGTGCAAT	alt_5616_new	24	31	10	14	37	24	19	21	29	31
CCGAGCCAGTGGAATA	alt_5616_new	0	0	0	0	0	0	0	0	0	0
TATCCGACTCCCTTGT	alt_5616_new	0	0	0	0	0	0	0	0	0	0
CATATGTGCCATCACC	alt_5616_new	11	35	44	23	39	19	29	22	42	30
TCAAGAGTTCACCTCG	alt_5616_new	48	38	37	32	67	30	55	28	63	34
CCAGGATCACAATACT	alt_5616_new	0	1	0	1	1	0	1	3	0	1
GCTCAAGCTTAACACT	alt_5616_new	8	12	12	7	15	1	20	6	6	9
ATCATTCTGGACGATG	alt_5616_new	29	54	46	39	71	34	47	31	59	34
CTAGATGAGTCTTTAA	alt_5616_new	17	38	23	16	43	15	34	24	50	19
AAGTTAATTCGTCTTC	alt_5616_new	21	26	13	10	23	23	22	18	21	18
GATACGATGATTTTAT	alt_5616_new	0	0	0	0	0	0	0	0	0	0
CCACACGTTTCCTAAT	alt_5616_new	0	0	0	0	0	0	0	0	0	0
TCTCGGGGTTGACCTA	alt_5616_new	14	24	8	6	15	3	20	6	12	5
ATATTACAACAGCCAA	alt_5616_new	80	181	93	117	157	94	178	89	169	65
CTTTGTTCTCGAGTCT	alt_5616_new	8	18	12	14	12	11	19	7	15	12
CTCACGACGACAGGCG	alt_5616_new	38	69	51	50	75	33	66	31	82	36
TTACTGATTGGGCTAG	alt_5616_new	26	44	31	27	48	27	60	24	48	20
CACTTCGTAGTGTACC	alt_5616_new	0	0	0	0	0	0	0	0	0	0
CCTATAAGCTAGCCAG	alt_5616_new	67	78	59	43	75	33	72	49	96	35
CCTTGGTCCAACTCTA	alt_5616_new	38	76	50	52	83	40	110	36	85	38
GTTGGCCTTTAACCGT	alt_5616_new	0	0	0	0	0	0	0	0	0	0
ATATCGGCTATTTGTT	alt_5616_new	0	0	0	0	0	0	0	0	0	0
GCGACCGATGGTTTTG	alt_5616_new	13	12	18	11	23	9	16	5	18	8
GTTTCTTTCTCTCATT	alt_5616_new	17	24	32	21	32	27	35	15	29	18
GCATTCAAATGGTCTC	alt_5616_new	7	12	6	8	20	9	6	11	10	12
TCCTTATTTCGTTTAG	alt_5616_new	6	7	15	5	19	8	24	16	22	10
CCATATGATTGGGAAT	alt_5616_new	0	0	0	0	0	0	0	0	0	0
CGGGTTCCGCATGCCC	alt_5616_new	0	0	0	0	0	0	0	0	0	0
TGGCCCCTCGCTTCAT	alt_5616_new	20	20	24	7	17	11	12	8	19	6
TGGGAATAAATTTTTG	alt_5616_new	92	97	98	68	95	71	97	61	114	67
GTCATCGGGACCGGCG	alt_5616_new	139	171	140	146	184	121	197	132	174	133
TTGGCAGTATGCCAAT	alt_5616_new	7	12	8	4	3	5	10	5	2	2
GTTCGGTGCTATTCTA	alt_5616_new	0	0	0	0	0	0	0	0	0	0
GGGCAGATTTGGTTCA	alt_5616_new	41	62	50	39	52	32	69	37	69	24
CTCACACTTGGGGGCA	alt_5616_new	56	113	77	75	97	79	141	65	113	59
TTCGTTAGGCTTTCCA	alt_5616_new	0	0	0	0	0	0	0	0	0	0
CGCACCGTTCTTGATG	alt_5616_new	33	54	44	37	61	40	60	34	63	29
GTAGTTACTGGACCGG	alt_5616_new	16	24	12	21	25	15	17	11	15	21
GACTTGTCTGGTTGTA	alt_5616_new	0	0	0	0	0	0	0	0	0	0
TTGGTGCATACCCGTT	alt_5616_new	9	5	7	4	10	5	12	9	14	4
CTGTGGGCCCGTCCTG	alt_5616_new	8	22	14	10	15	6	27	3	13	7
CTAGCGGAGGCACGGC	alt_5616_new	2	11	2	4	6	3	8	2	12	3
GGATTAGATTATACGT	alt_5616_new	12	19	24	14	21	13	18	13	32	3
AGTGGCGGAAACGGGT	alt_5616_new	14	12	10	6	17	9	21	9	15	8
GACCTGCGAGCCTGCT	alt_5616_new	13	13	13	12	15	7	23	11	17	11
GCTCCCCAGGGTTAGC	alt_5616_new	0	0	0	0	0	0	0	0	0	0
TGTTCGGCTACCATTC	alt_5616_new	7	9	6	3	10	10	15	9	8	7
TTTTCCGTTGTCCGTT	alt_5616_new	8	15	16	15	11	8	14	10	38	12
GCCAAGCTCTTCGGGG	alt_5616_new	11	15	28	23	38	13	19	16	33	13
GGAGGAGGTCCTTCGA	alt_5616_new	34	52	49	51	45	36	58	49	58	25
AAGTAGATGGTCGGCA	alt_5616_new	32	39	42	19	36	19	40	30	38	23
CGACCGGTTAGTATTA	alt_5616_new	8	17	12	18	18	12	22	11	34	19
TCTCCCATCCATGGAC	alt_5616_new	14	43	18	11	48	19	59	9	52	13
AATGAACTGAGATGAA	ref_6090_new	0	1	0	2	2	0	0	2	6	1
TCATTCTTTTGCCCTG	ref_6090_new	43	77	55	35	80	27	89	41	70	36
GAGTCGTGGACGCCCA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CGCTTGCGCTATTAAG	ref_6090_new	4	11	8	7	8	9	5	9	8	3
CCAGTAAGGCGGACAT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TTTCTAAAATCTTTCC	ref_6090_new	23	37	25	32	34	22	52	18	29	23
ATCGTGGCTCCGTTTC	ref_6090_new	11	39	13	12	32	11	28	17	33	10
ATACGGGGCCTACCAT	ref_6090_new	19	36	13	6	26	17	33	2	26	13
TGTATCTAGTATACAT	ref_6090_new	1	0	0	0	1	0	0	0	0	0
AAAGTCTTGGTCGTTA	ref_6090_new	14	47	18	19	55	10	54	18	56	14
TGCAATTTAATCCTGC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TTGTATGAGCCTGGCT	ref_6090_new	28	94	41	29	80	29	85	15	97	25
GTCCTCTCACGTTGAT	ref_6090_new	41	79	36	35	62	33	59	29	55	22
GGGAATGTAGTACGAG	ref_6090_new	5	16	11	11	22	7	37	6	12	12
GGAATCCATTACCTCG	ref_6090_new	8	42	18	17	38	17	51	10	34	12
GAGGGCTCTGTGACTA	ref_6090_new	26	54	23	29	24	11	38	11	50	16
TGTGCTCACGCTCTCC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
ATTCGTTTTTATAGGT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TTGGATCTGGCAACCG	ref_6090_new	5	7	3	3	5	3	11	3	10	5
CCGTCATTTTGGTCAG	ref_6090_new	19	61	44	15	64	26	67	17	65	29
TTTACGTTTATGGGTC	ref_6090_new	6	10	11	4	10	7	19	6	12	5
CCTAGCACGTTCACAC	ref_6090_new	16	43	32	19	51	19	61	18	39	17
TTTGTTTTATCCTGGT	ref_6090_new	30	59	35	27	80	30	76	34	93	27
CAAGGTGCTTCTGCTA	ref_6090_new	32	83	32	27	86	37	90	37	88	25
CGTTGAAGTACGTGTT	ref_6090_new	13	22	9	2	24	8	24	9	30	10
TTCGGTAACTCATTCA	ref_6090_new	3	13	9	7	14	5	16	4	12	5
ACCAGCATATTTCTGG	ref_6090_new	0	0	3	0	8	0	1	0	2	0
TTGGAGAAAGTTATAC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TCTGCCCTGTCGTTTG	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CGGGGGACAAAATTTA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CGAGGCCAACACATAT	ref_6090_new	13	18	7	19	27	7	30	22	26	9
ACTGGGTGAACTGGAA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
AGGCACCACTCAGGGA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CTGAATCCCCGGGTGC	ref_6090_new	1	21	8	7	21	3	15	3	16	8
GAGTCCTGGGGGAGGC	ref_6090_new	7	14	2	3	12	5	11	7	15	6
AGCCTCATGCGCGCGT	ref_6090_new	8	22	6	9	16	2	13	8	23	1
CAGACGAGGTCCGGCG	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CTGAAAATGCTTGCTC	ref_6090_new	15	30	17	12	46	5	35	19	42	14
CGGGTTTGTTTCCAAC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TTGCCAATCACTTGAC	ref_6090_new	9	20	26	7	28	11	40	19	32	10
CATCGTGATAGGACAC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TTTGACTTGCAACGCT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
AGGAAACCGTCTGAAT	ref_6090_new	3	6	1	0	0	0	3	3	6	3
TCGGGCGTTGAAGCAG	ref_6090_new	26	46	36	28	49	11	49	29	47	21
TATGTCGCGTCTCCGC	ref_6090_new	11	13	10	5	15	10	14	7	15	12
AGTGCTCGTCTGGGGG	ref_6090_new	16	52	29	24	41	18	43	20	45	20
ATAGAGCACTCTTGTT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
GGGGATATTTATCAGA	ref_6090_new	15	36	28	6	23	16	25	7	28	17
TAAGGGCGTATGGACA	ref_6090_new	25	46	35	30	58	27	52	30	40	19
CCACTCAGATTTCTTT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CAATAGCTTGTCCTAA	ref_6090_new	19	31	18	17	48	17	38	25	41	9
TTGTACTACGCGACAC	ref_6090_new	21	43	26	22	51	22	76	17	84	19
AATATGGTGCATCTAG	ref_6090_new	0	0	0	0	0	0	0	0	0	0
GACCAGCTTCTTGGGA	ref_6090_new	5	10	8	3	7	7	6	5	14	1
CCCCTTCAATTTACCG	ref_6090_new	15	38	27	23	40	16	38	15	42	5
TTCTGGCGTATAACGT	ref_6090_new	44	97	48	37	89	34	90	40	134	41
ACCGCAACGCTTTAAG	ref_6090_new	13	39	16	13	52	15	46	17	49	7
GTCACGTTGCGACGCG	ref_6090_new	0	0	0	0	0	0	0	0	0	0
AGTACTACCCGCGCTG	ref_6090_new	2	16	5	5	12	7	6	3	11	3
ACAGCAGTAGTAAATT	ref_6090_new	16	25	16	16	24	10	20	12	33	7
ATTTCGTTCGTGGGCA	ref_6090_new	2	6	7	3	8	4	6	7	11	6
CTCACGACGTGGCTTT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TAGTTATTCTTATTAA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CTTTATGTGAGAAATT	ref_6090_new	8	23	17	9	21	11	28	10	26	11
GTCACAGCTAGTATAC	ref_6090_new	6	17	3	6	15	6	14	5	18	2
ATAGGCAAACATGAGT	ref_6090_new	1	3	2	1	0	1	3	1	4	3
CGATGCTGTGGTTCCA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TTTTTCTTCCCGTTTC	ref_6090_new	24	34	33	29	36	22	37	20	21	24
CGGCTCACTCTCACTT	ref_6090_new	9	21	5	4	11	11	9	16	16	9
TCTCATTGTCGGTCTC	ref_6090_new	53	133	102	54	129	68	105	64	130	60
TGATATCGTTCTTAAC	ref_6090_new	16	47	38	18	49	22	48	16	34	7
GGCTGTGAAACTTCGC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CTACGTTTAGGCACGT	ref_6090_new	4	4	0	2	6	1	4	4	9	2
CCCGCCCTGGATGATG	ref_6090_new	0	0	0	0	0	0	0	0	0	0
GCTATGATCTGTTCGT	ref_6090_new	9	12	5	7	19	2	12	8	28	6
AGGCCGGGCGTTCTCA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CATCTTAGCGGCGACT	ref_6090_new	25	31	22	22	22	20	25	13	35	11
GAGTCCTACACCCGAC	ref_6090_new	18	52	27	31	56	23	52	18	58	16
CACACTTATCCTCTTA	ref_6090_new	27	68	35	31	65	20	78	21	75	35
TTGCATACACGTCCCT	ref_6090_new	2	12	1	3	14	4	16	2	24	2
AGGTGCTGACTCGGGC	ref_6090_new	13	18	18	15	28	7	29	12	24	11
CAGTGAGGTGTTTTTA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CGGCAGCTCCTAGAGA	ref_6090_new	3	4	4	8	5	3	3	1	7	2
CCAATCGTTGGTTGGA	ref_6090_new	26	45	31	21	41	21	57	26	46	23
ATCGACTGGTGATACG	ref_6090_new	27	74	26	19	86	29	88	27	97	15
GTAAATTCTGTTCGTA	ref_6090_new	62	98	69	64	120	51	143	40	107	60
TTAATGCACGACGTAC	ref_6090_new	17	53	20	12	47	23	41	20	58	15
CTGTTCCTGAGACTCT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CTGTTGCAGTGTCCTC	ref_6090_new	16	44	24	15	51	16	36	17	65	15
CCTGTCTAGAGGATTT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TATTGGCGGGGGGTTA	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CTCCATATTGATTCAC	ref_6090_new	20	31	27	28	35	34	48	24	41	13
CCCTAAACAGTTTTAC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TTAACCGCCTGTAGAG	ref_6090_new	3	11	1	5	6	3	21	4	19	4
CTATATATTGAGTGGA	ref_6090_new	6	5	5	2	6	2	6	3	5	5
AGGTCAAGTCCATACA	ref_6090_new	22	43	20	31	53	18	58	20	57	29
ATCCTTATAGGAGTAA	ref_6090_new	32	58	41	25	76	43	63	39	75	36
CCAGATGACAGACAGC	ref_6090_new	0	0	0	0	0	0	0	0	0	0
CCTGCGGTTCGATGCG	ref_6090_new	8	38	20	19	26	16	20	8	33	6
TTATCGATCCGCTCGT	ref_6090_new	0	0	0	0	0	0	0	0	0	0
TACTTGAGATCCATCG	ref_6090_new	6	16	6	6	11	8	6	2	11	5
TTATAACGTACGCTGA	alt_5948_new	0	0	0	0	0	0	0	0	0	0
TGTCCGTCAATAATCT	alt_5948_new	67	58	76	73	57	77	54	63	77	39
CTGGTAATTTAGCAGC	alt_5948_new	0	0	0	0	0	0	0	0	0	0
CACATGTAGGAGAGTA	alt_5948_new	0	0	0	0	0	0	0	0	0	0
TTCGTGGTCGTCCAGT	alt_5948_new	3	2	2	3	0	5	1	3	2	2
CCAACCAAGGACTATT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
ACAAGGAAATATCGGT	alt_5948_new	18	14	18	15	15	18	12	11	15	18
TCATTTTCGCCTGGTC	alt_5948_new	0	0	0	0	0	0	0	0	0	0
CCTGGTTTTGGCTTCT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
CCTTACCGCTCAATAT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
TAATCCGAATCGCCCC	alt_5948_new	5	2	10	2	4	7	3	3	2	7
GGGCGTACATGCGTTC	alt_5948_new	0	0	0	0	0	0	0	0	0	0
TGTTTACGCATTACTG	alt_5948_new	0	0	0	0	0	0	0	0	0	0
ATCTTCAGTCTAGCAA	alt_5948_new	56	40	67	45	51	40	48	30	42	48
TTTTAAACTAGGTTTA	alt_5948_new	26	35	39	36	38	29	38	32	63	28
TACTCCAAGATTTCGT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
CCCCAGGTGTGCCGCC	alt_5948_new	1	11	10	6	12	1	5	2	14	5
CTTCATGATTGAATAT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
ATCCGGTAAACACCCC	alt_5948_new	0	0	0	0	0	0	0	0	0	0
ATCTCCCTATCAAACG	alt_5948_new	41	58	60	29	57	23	63	31	48	23
CAATCCTAAAGCCTTA	alt_5948_new	29	24	26	18	20	28	32	33	28	30
ACCACCGAACGTACAC	alt_5948_new	10	7	10	2	10	9	4	7	7	5
TCGTACGTTCGCGAAC	alt_5948_new	24	11	21	20	8	20	18	9	20	29
AAGCACCTGCAGTACG	alt_5948_new	3	6	4	3	7	5	7	7	2	5
AGGCGATTTATGTTTC	alt_5948_new	3	3	1	0	1	4	4	0	2	1
GTGCACGGGCGTCAGA	alt_5948_new	7	15	24	8	11	8	13	14	12	4
TGCGTTATACCGGGAC	alt_5948_new	0	0	0	0	0	0	0	0	0	0
GACCTGGAGTTTTGGT	alt_5948_new	57	60	73	62	55	65	49	76	58	44
CGGGATTTGCGCTAGT	alt_5948_new	38	40	34	31	46	22	45	34	44	25
CACTGTTGTGGTTGAG	alt_5948_new	0	0	0	0	0	0	0	0	0	0
GAAGGTTAGCTAAAGC	alt_5948_new	8	6	12	6	11	4	17	9	15	8
TACAGGCTGAAGCCAA	alt_5948_new	5	9	7	12	12	8	8	4	8	8
TCTTTCAGAAGGAGAA	alt_5948_new	65	71	115	92	68	79	70	77	102	68
GTTCGGTCATAAGTCT	alt_5948_new	21	24	28	18	22	31	24	19	31	27
GACTTTGACTTATCAG	alt_5948_new	18	16	19	22	18	13	17	10	15	21
GCGTGAGGTGAGTAGT	alt_5948_new	56	60	89	69	63	60	65	57	69	60
ATTATTGGTTTCATAC	alt_5948_new	26	42	45	19	45	37	30	25	42	27
GCCTGCTCCCGGGAAT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
TAACCGTTTAAATTGT	alt_5948_new	7	7	3	4	7	3	6	5	3	0
CGGAATCAAGTTAGTA	alt_5948_new	29	36	35	32	28	20	39	34	33	18
GCTATGGAGGACGATG	alt_5948_new	40	69	84	81	53	59	57	57	61	60
AGACTATAATCTTCTT	alt_5948_new	1	2	6	6	6	1	4	3	5	1
CTACACAAGATTATGG	alt_5948_new	143	131	195	139	116	128	119	140	130	122
CTCTCCCCCGAGGGAC	alt_5948_new	1	3	5	5	4	3	4	1	3	2
GTAGTCAGTGCGAATT	alt_5948_new	47	39	48	42	43	33	48	38	62	39
GAAAGCGTACTTGATG	alt_5948_new	29	17	17	21	24	16	24	14	33	23
TTCGCTATAGGACATC	alt_5948_new	0	0	0	0	0	0	0	0	0	0
GTGCACCAGAAGCATA	alt_5948_new	37	46	46	47	54	41	50	39	54	38
TTAGGAAATAGAACCA	alt_5948_new	13	21	30	21	27	23	27	23	23	31
ATCTGGGCGATTGTAT	alt_5948_new	0	0	0	0	0	0	0	0	0	0
GAAACCTCGACCAGAG	alt_5948_new	17	29	28	24	22	13	16	14	20	17
TTGAGGTTTTAGGTAC	alt_5948_new	76	114	138	79	94	74	97	88	85	95
CAGTTAGCGTGTCCCG	alt_5948_new	116	116	133	120	127	87	120	109	120	107
GCAATAAGTTATTCTG	alt_5948_new	19	16	19	11	19	11	12	19	10	11
CGGTTACCCTCATAGA	alt_5948_new	12	24	28	21	25	10	28	15	18	16
CCAATGGTTATAAGCC	alt_5948_new	11	27	10	12	27	10	27	8	30	11
TTATTGTTCCACCGTC	alt_5948_new	53	51	61	46	42	60	39	38	26	52
GGGATCTGACAACAAC	alt_5948_new	66	56	53	79	42	48	59	43	53	53
CCATTGCCGGTGCAGG	alt_5948_new	0	0	0	0	0	0	0	0	0	0
CTGTCTCCGTAGACTT	alt_5948_new	7	14	7	14	13	11	19	9	15	11
TCCTGGACTGGTTCGC	alt_5948_new	38	35	40	29	27	26	42	33	37	37
ATGTGTACCATCATAT	alt_5948_new	110	113	133	153	127	102	105	103	104	111
GAGGCGGTTTAACGCA	alt_5948_new	218	161	281	222	162	222	196	201	194	181
CCTCGACATTTTCGCA	alt_5948_new	76	114	103	96	86	71	119	69	86	82
GTGAGCGAACGGAGTC	alt_5948_new	38	43	40	56	34	33	40	31	52	35
CATGTAATGGTTGTTC	alt_5948_new	110	81	112	115	112	83	88	107	84	99
AGACCATGGTGTCCCG	alt_5948_new	0	0	0	0	0	0	0	0	0	0
ATGGTGCGGTGCTCCT	alt_5948_new	13	23	28	18	35	14	22	13	30	19
TTGTATAATACTCTTA	alt_5948_new	56	55	89	74	62	66	64	71	70	74
AACCTTTAATTTAGGA	alt_5948_new	0	0	0	0	0	0	0	0	0	0
CGCTTGTGTTGTTCTA	alt_5948_new	0	0	0	0	0	0	0	0	0	0
CCGTGGTGCTTCTGGG	alt_5948_new	0	0	0	0	0	0	0	0	0	0
AAATTACACTACCCTA	alt_5948_new	14	14	19	13	9	16	6	18	15	19
TGCTCTCACCATTACG	alt_5948_new	0	0	0	0	0	0	0	0	0	0
GGTTTTCCGCCGCCAG	alt_5948_new	40	29	51	34	34	35	46	35	43	47
CGAGTGTTAGTTGCCG	alt_5948_new	0	0	0	0	0	0	0	0	0	0
TTAGGTCGATCCGCAA	ref_314_fdr	18	17	21	22	10	21	14	18	22	16
CCTCTATGTGTTTGCG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGTCTTACGCATC	ref_314_fdr	28	8	40	25	11	26	7	32	17	20
AGGTTATGGGGTTATT	ref_314_fdr	41	46	41	44	47	45	42	35	44	35
TATTATGTATATTAGG	ref_314_fdr	80	63	87	86	51	84	67	79	76	65
TATTACAGGATTAGAC	ref_314_fdr	3	2	4	1	1	3	2	2	2	3
ATTTCCTGACCATGTA	ref_314_fdr	31	16	41	37	21	28	17	28	36	27
GAGTCCGCCAGCAATC	ref_314_fdr	58	52	92	79	61	67	50	69	61	77
TCAAGGTAAACCGGCC	ref_314_fdr	36	30	39	43	39	33	28	27	35	31
AGCACTCCTCCTGAAC	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CTAGAGCTCCCCATCA	ref_314_fdr	0	7	0	3	7	1	10	1	8	1
TAATCTCTAGAACAGT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
AGCTACCTTTTACACA	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GCGTAAATTAAATCGA	ref_314_fdr	168	103	202	156	121	152	118	167	134	143
ATGTCTAACGTGATTA	ref_314_fdr	37	42	51	39	45	49	43	46	41	39
CCTTTTTTAGCGGGGA	ref_314_fdr	12	20	26	12	17	28	9	12	11	22
GCTTGACCATCATATT	ref_314_fdr	29	20	43	28	23	24	26	22	37	28
TAAGAAAAGTTTTCCA	ref_314_fdr	32	35	42	29	29	29	25	29	34	29
CAACCTCACTAGCCTA	ref_314_fdr	3	4	3	6	3	1	9	4	1	0
GTCTCTGTCCCAAATA	ref_314_fdr	133	157	177	145	156	151	158	124	171	184
CATAGATCGGTTGGGC	ref_314_fdr	15	9	16	10	15	5	21	13	10	9
TGGTCTAGAATTGCGG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GATTTGTCGTCTTCGG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CAACCCGACAATCGCC	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
ATAATCTTTTTTCGCA	ref_314_fdr	60	57	87	64	60	67	59	64	55	67
TTAAATTTTCGGATGT	ref_314_fdr	116	97	141	120	106	123	112	136	107	94
TCACTCTCGGCCCCCC	ref_314_fdr	39	33	40	31	37	38	27	26	48	27
GGATGTCTGTCCGGTA	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCTAAGACAAGCG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCAGTGTTACGCC	ref_314_fdr	32	40	50	36	47	53	45	40	47	44
GCATGCATTCGAAAGC	ref_314_fdr	6	3	4	0	7	3	3	3	2	5
CAGACTGTGTTCTATG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CATCCTTTTCGGAGGC	ref_314_fdr	32	29	38	35	32	25	29	34	28	34
TTGTTACGTCTTTAAT	ref_314_fdr	61	49	75	48	50	59	58	59	46	56
TAATCGTCCACAGGTG	ref_314_fdr	33	29	33	43	39	31	25	40	25	43
TAATGGTCTAACCCGC	ref_314_fdr	84	61	104	70	61	72	79	91	60	80
ACATGGGCTTGAACTC	ref_314_fdr	5	8	5	4	6	3	5	2	11	5
CTGCAAGCTAAAGGAG	ref_314_fdr	5	0	7	2	6	2	3	9	5	2
GCCTGATTCGCACTGC	ref_314_fdr	91	114	99	65	124	61	127	57	112	77
TCCAATATTAGCCACT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GGATTTATCATCATTT	ref_314_fdr	36	32	37	38	49	38	41	48	29	47
ACCCGTGAATCCCGCG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
ACTATGATATCGCCGA	ref_314_fdr	8	5	11	10	10	5	6	0	9	3
ATGTGTCGCGTGGTCC	ref_314_fdr	3	1	11	9	6	4	7	10	11	9
TCGGTTTGTCGACTGT	ref_314_fdr	26	26	20	18	19	17	32	12	31	16
TGTCATTACGGTCACA	ref_314_fdr	4	1	4	4	0	2	3	0	0	0
TCACGACACGGCACAT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CGGTTAGCTCAATTTA	ref_314_fdr	33	41	53	50	28	26	47	33	38	23
AACGGTTTTAAAATCT	ref_314_fdr	39	30	36	49	33	35	33	37	32	31
ACTTACGACTATATGT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGGACATACTGT	ref_314_fdr	65	51	66	60	54	58	50	45	64	45
AGGGTACACGTCTTTC	ref_314_fdr	6	5	5	3	3	3	4	4	5	1
GGCCCTATATACTGTC	ref_314_fdr	54	58	83	67	62	53	75	60	50	50
TGTCTGACCTGCCAAT	ref_314_fdr	74	75	103	72	70	75	50	87	74	64
TCTTGCTTAGGTGATG	ref_314_fdr	78	66	92	84	56	71	59	66	58	60
CCTCAGTCTCTGGAAT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
TGGTATTGAATGTATC	ref_314_fdr	24	25	22	20	31	20	30	19	35	35
ATTCCCCGCAGCAGTG	ref_314_fdr	1	4	3	0	4	1	1	0	0	1
CATTGGTATACAAGCC	ref_314_fdr	8	9	14	10	6	3	7	7	6	7
TCCTACTTTGCCGGTT	ref_314_fdr	18	16	21	21	24	18	27	18	14	20
AGGTATGATCCGTTGT	ref_314_fdr	38	34	48	45	40	40	41	46	33	30
GTAAATTCCTTGTTTT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CCTAATATCCCCCGGC	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGTCACCGGATTG	ref_314_fdr	19	12	31	25	22	20	23	17	22	25
TCCGTGCATCGTTTAA	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GGCAAGCTTCTTACTT	ref_314_fdr	60	36	39	31	22	38	22	26	38	47
GGGATCCACTTCCCGA	ref_314_fdr	41	31	62	39	34	45	35	42	23	40
AGAGCTTATTTGGGAT	ref_314_fdr	53	41	46	51	37	45	47	49	39	41
CAGGTATACGGTTTGG	ref_314_fdr	33	39	41	44	32	29	43	37	41	31
CACTATGCTTTGCAAA	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCTGCAATGTACC	ref_314_fdr	5	2	1	2	1	1	1	2	1	2
CTTTCGCCCGATTGAA	ref_314_fdr	37	45	55	55	51	24	30	48	33	50
ATTCTCAGCAATGGAC	ref_314_fdr	64	49	73	66	47	52	34	44	52	51
CCTCGGGTGGTGCAAG	ref_314_fdr	4	9	5	5	7	7	6	7	5	6
GTATTGGCCGTGTAAG	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CAAAACTGAGTTACGC	ref_314_fdr	29	37	46	33	35	32	40	25	35	20
GGGTTTCAAGTGATTG	ref_314_fdr	40	42	58	31	38	37	37	28	36	37
GTACCTTTTACAAGTT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CTTATTCAGACCATTC	ref_314_fdr	18	25	24	22	24	32	35	14	19	22
GCTTAGCTGTTTTTCA	ref_314_fdr	25	30	25	29	18	24	25	18	28	25
TTTCTACCGCTCTATT	ref_314_fdr	15	20	34	14	15	7	14	8	18	23
CGCTACCATCTCTAAC	ref_314_fdr	0	1	0	0	0	0	0	0	2	1
CCGTGATACGATTTGA	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
CGCTCGTTGTCTTTAC	ref_314_fdr	52	60	61	51	46	51	65	58	67	41
TCTATTGTTAGGTTCT	ref_314_fdr	7	10	7	4	6	3	5	3	1	0
GAAATGGCTGTGAAGT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
TTGATCCTCGCGACTA	ref_314_fdr	41	23	45	43	34	44	24	33	23	37
CTTCGGTTTTCAAGGT	ref_314_fdr	3	5	16	14	4	6	8	6	7	9
TATACAACTCGGCAGT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCACATCGTCGCT	ref_314_fdr	45	22	35	35	30	31	19	24	34	26
TTCTTTTTGCTTCCTT	ref_314_fdr	14	13	19	14	14	14	13	19	16	17
CGGCTTTACGTGTAGA	ref_314_fdr	7	22	16	8	16	10	18	9	12	16
CCTGGGCCGCTCGGGT	ref_314_fdr	2	7	9	3	3	8	12	5	5	1
CACCGCTAGAGTCAAC	ref_314_fdr	202	201	241	206	207	206	209	180	233	169
ATCACTGCGTCACGTT	ref_314_fdr	21	20	30	17	20	16	10	17	19	24
ATGTAATGTCGTGTCT	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAGAACCGGCTTG	ref_314_fdr	29	32	45	31	38	40	35	38	39	34
ATCCGCACTACGCTTC	ref_314_fdr	11	16	15	19	21	12	8	9	17	17
GTCTGTATTCCAGGTG	ref_314_fdr	19	32	24	13	26	14	30	12	21	15
GCCTACTGTACCAGTT	ref_314_fdr	63	85	94	68	89	88	108	91	84	77
TGCCCCCAGCGTAGGT	ref_314_fdr	14	11	6	22	4	16	5	11	9	11
CCCCCTGTGGATATAC	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
TTGATACAACAACTTC	ref_314_fdr	197	168	219	178	174	168	217	167	198	148
TTAGAAGGACTCCATC	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTAATCAAGAAA	ref_314_fdr	20	18	35	20	21	21	14	20	16	24
TGGCGCCTATTTCCCT	ref_314_fdr	91	55	111	70	53	91	48	67	48	78
AGTATCCTCCATGTCT	ref_314_fdr	27	20	42	28	17	37	30	26	24	27
ATGCTTGGTCGGGATG	ref_314_fdr	11	4	10	7	7	5	7	6	8	8
TGTTTTTGCTTCTACA	ref_314_fdr	0	0	0	0	0	0	0	0	0	0
TAAAATTGTATACGTA	ref_314_fdr	60	54	84	71	78	76	65	61	72	63
AACAAGTCCACATGCA	ref_314_fdr	12	20	19	14	25	14	22	25	25	14
GATTCTGCGGCGTTGC	ref_314_fdr	24	19	20	25	24	27	24	25	22	31
GGTCCTCAACTAGACC	ref_314_fdr	12	9	6	8	9	4	7	7	7	6
TTTGTTTACGGTATCG	ref_314_fdr	76	50	105	65	56	69	47	71	61	54
GCCATCTTCACCGTCG	ref_314_fdr	7	8	4	6	0	6	8	7	5	6
GTATGCCCGAGATTAC	ref_5221_RC	4	11	9	7	3	4	6	7	11	11
AGGGTAAGGCTGGCAC	ref_5221_RC	34	39	24	28	49	18	42	18	44	20
GACTCGAAGGTAAAAA	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
CGCGAATCAAATAGTT	ref_5221_RC	7	7	4	4	5	2	8	3	3	3
GACGTTTCTCCGCCAG	ref_5221_RC	17	25	24	18	36	20	41	12	32	10
CAACCAGTTCCTCCTT	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
GTTCGGTTCTATAGAG	ref_5221_RC	155	221	185	172	250	174	237	170	261	142
TCGGGCTCTGGTTGGT	ref_5221_RC	23	46	38	25	32	28	54	21	42	23
TGGCTTAATTGGGTGG	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
CGTATTGTGTTCCAAG	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
AGTGGTAAGAGAGCAA	ref_5221_RC	39	41	40	41	55	36	44	34	48	34
GTTTTCCTCGGGTTTT	ref_5221_RC	42	65	70	47	78	58	70	62	70	38
CAATTGGCCCTAGAAG	ref_5221_RC	45	71	60	41	60	26	81	38	97	52
ATCAAGTCTAGGTCTT	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
GACTTTACCTTTCTCA	ref_5221_RC	34	69	49	48	87	38	84	37	78	35
CGGCTGCCACTGGTGG	ref_5221_RC	10	10	10	9	9	6	10	9	13	4
GTGTATGCCCTTAAAA	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
TCGTGTACCTCCGATC	ref_5221_RC	40	64	50	39	45	26	36	37	50	30
GTGGATTTTTAAGCTT	ref_5221_RC	17	19	12	18	31	12	20	12	24	5
GGTGTGAACCGCCCAC	ref_5221_RC	22	37	36	22	23	23	43	36	48	14
GCTCCCGTATCTGTGT	ref_5221_RC	23	30	35	17	34	29	59	18	50	27
CGCGCTTGTCTTTCTA	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
ACACTCTTCTATAAAT	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
TCTGCGCACTGAGCAT	ref_5221_RC	31	59	52	36	55	45	65	37	77	38
CCTCTATTTTGCTGCC	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTGTCTTTCTTG	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
TTATTGTCTAGAGTCA	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
CGGTTCTTAAGACTAT	ref_5221_RC	5	10	3	1	4	4	7	3	9	2
CGTTCCGAACGTCCAC	ref_5221_RC	6	8	11	8	16	8	9	6	11	9
GTAAGGTATTTCTCTA	ref_5221_RC	10	24	18	7	32	7	34	11	31	14
AAGGCGTATCGTCCCT	ref_5221_RC	17	7	4	5	13	5	14	4	7	6
TCTCCCACTCTGACTC	ref_5221_RC	77	98	56	65	131	54	132	67	107	52
AAGTGTCGTATGGTGT	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
GTGTGACATCCTCTCA	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
ACTGGGTCCTCATAGA	ref_5221_RC	33	29	39	19	37	20	39	20	31	19
TTGTTCCTCTCGCGCT	ref_5221_RC	9	8	11	3	9	6	13	3	20	6
CCGCTAACCTTTACCT	ref_5221_RC	7	66	15	17	57	17	73	19	74	15
TAATCTGTTTTGTTAG	ref_5221_RC	0	0	0	0	0	0	0	0	0	0
AAACTCTTTAGTATAG	ref_5221_RC	21	42	23	28	42	19	38	19	47	21
GAGATTCATGTCGTCG	ref_1924_RC	23	4	36	34	4	27	10	30	4	29
AATAGTCTGTCGTTTG	ref_1924_RC	108	53	192	134	45	113	52	132	72	105
GGTTGTAGCGGTTCTT	ref_1924_RC	4	0	0	4	1	1	0	2	0	5
CTCTGATTGACTGTCA	ref_1924_RC	45	11	45	44	12	40	17	20	10	44
GTTCGTCGGTGCGGCA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TAAGCTCATGCGGTCA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ATCTCCTTGTGCCGAT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCAATAATTTGA	ref_1924_RC	211	59	204	203	64	178	91	164	74	162
GATGTCGGTATCGTCA	ref_1924_RC	136	35	149	146	31	127	23	130	27	129
CGCGGAATCAACGTGT	ref_1924_RC	165	39	211	197	43	165	50	148	48	160
ATGCCCCGCTATTTCT	ref_1924_RC	307	76	341	298	66	307	63	276	78	270
GTGGTCCTGAACTTGT	ref_1924_RC	142	52	230	162	50	163	46	186	56	147
ATATAAGCGTCCAGTC	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ACGGTCATGAGTATTA	ref_1924_RC	642	166	785	668	203	581	200	643	185	528
TCCTCTAGCACCCGGC	ref_1924_RC	158	53	204	178	38	175	41	138	61	148
ATCTCGTTCCGGCTTA	ref_1924_RC	612	214	696	684	161	595	176	515	186	508
CTTACCGCCTCTTAGT	ref_1924_RC	117	61	177	178	70	118	66	169	50	107
GATCTATAGAAGTTCC	ref_1924_RC	105	25	110	103	29	89	19	111	23	89
CAGTTGTAAGTCAGAA	ref_1924_RC	221	79	251	241	79	194	83	252	79	191
CGAGTTTCCCTCCATG	ref_1924_RC	374	114	485	373	117	405	115	361	138	347
TGTCTTTTATATCAGC	ref_1924_RC	52	23	44	55	10	42	15	48	16	43
GTTGTTTTAATCGGTA	ref_1924_RC	96	29	138	121	40	115	48	103	42	132
GCGCTGTCAGTTAGGA	ref_1924_RC	20	4	12	12	8	16	8	10	4	16
GGTACTCGAACAAATT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TCCATTGTCCATTCAG	ref_1924_RC	47	16	53	81	22	37	23	51	14	47
TGGCTTAGTTCTCATT	ref_1924_RC	295	90	378	372	92	286	87	303	96	254
AACTTGATATCCCTCG	ref_1924_RC	52	24	81	73	19	74	21	78	21	45
CTACTGTCCGGTCCTT	ref_1924_RC	19	10	37	44	9	39	13	25	14	26
AATCCGTTGTGACCTA	ref_1924_RC	51	23	45	73	15	48	12	44	14	41
ATCGTGAGGAGCTGGC	ref_1924_RC	144	42	161	156	27	135	46	148	37	137
TGGAAGGTAGGATTTC	ref_1924_RC	162	45	192	128	37	129	34	142	42	110
TCAGTCTCAGTAGCTT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CTCCACCCAGACTTTA	ref_1924_RC	192	51	219	208	49	167	57	190	58	154
ATCGGTGGGGTTCTCG	ref_1924_RC	52	15	59	51	14	49	17	47	20	45
CGCGCGACACGAGCGG	ref_1924_RC	148	36	182	178	26	142	41	150	43	117
AGGCACTGAGGTTGCG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
GGCTCCACACCTACAA	ref_1924_RC	49	14	67	44	19	42	17	37	17	42
TGATGGCCACCTGAGT	ref_1924_RC	122	35	136	114	39	90	36	99	29	112
TACTAGGTGCGACATA	ref_1924_RC	29	10	38	34	7	29	11	24	20	35
GGCTGCTTCGGGCTAG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TATTACGATGTAGCAT	ref_1924_RC	85	18	74	111	16	73	20	61	16	87
GAATTCACGCTGTTTG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ATCATCTCCCTCCGTA	ref_1924_RC	25	7	31	48	8	35	11	38	9	27
TGCGTTTCCATGCGTA	ref_1924_RC	78	24	97	86	27	70	20	89	27	59
TCGGTGCTAAGGCAAT	ref_1924_RC	399	121	460	475	119	382	118	413	128	363
TGTACATGATCGCTGC	ref_1924_RC	88	20	96	106	23	65	24	58	25	70
GTCTTGTTGCAACAGT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CATTAGTTTTTGTGAT	ref_1924_RC	194	105	239	239	92	159	132	219	97	143
ATCGCCTTGTTCCGAT	ref_1924_RC	373	94	428	384	117	354	121	344	105	330
CTCCTTGCGATGTCCG	ref_1924_RC	269	60	320	274	70	219	75	213	87	173
GATCACTTGCTGCCTG	ref_1924_RC	14	5	21	15	2	16	4	18	4	15
CGGTTGACGCAGATAT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CTAACTATTATCGTGA	ref_1924_RC	59	19	81	71	22	53	29	54	26	45
CGCCGCTATCACATAC	ref_1924_RC	138	33	140	122	41	119	42	133	47	107
TCCTCCCTTATCCGGT	ref_1924_RC	133	49	144	134	39	104	35	146	52	117
TCCTGAAGTAGTCGCC	ref_1924_RC	44	9	39	47	14	32	7	25	7	30
GAAAGAGCGTTTCTCT	ref_1924_RC	238	58	228	192	48	172	56	194	76	180
CGTTTACATTTTACTC	ref_1924_RC	15	10	25	25	6	20	6	19	14	17
ACGTTTCCGCTCACGT	ref_1924_RC	36	10	46	33	10	26	6	34	9	21
CGTTTTCTGTATCCCC	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CATCTTGCCAGTTTGA	ref_1924_RC	332	88	381	384	99	309	97	341	96	248
GATTCTATCAGACCTA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
GACTCGAGGATTTGGG	ref_1924_RC	43	5	43	23	2	29	4	29	7	23
GTTCGGGCTCGACCAC	ref_1924_RC	56	16	98	90	29	91	21	76	19	66
TTTTTATGATGATCTG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TTAGTTAGCCGACGGG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TCTGTCATCAGCTGCT	ref_1924_RC	159	55	231	223	61	169	78	187	65	148
TTCACTGACGCTCTCC	ref_1924_RC	15	26	19	22	30	11	20	5	18	13
TAATAGGAACTGTATA	ref_1924_RC	46	14	45	63	6	59	18	60	6	47
GGGAAAAACTGGCATG	ref_1924_RC	769	202	914	821	247	676	221	693	248	577
GCTTTAATGTAGTGAC	ref_1924_RC	220	64	290	224	66	218	90	198	80	194
GCGTGACCGTTCAGCC	ref_1924_RC	33	3	40	33	6	24	9	26	12	27
TAACCCGATAAGTATG	ref_1924_RC	67	10	60	62	11	64	15	59	15	62
CTTAGTACCTGATACG	ref_1924_RC	68	17	79	81	24	76	22	78	15	67
ATTTACGCCCATTTCA	ref_1924_RC	27	16	48	34	13	38	6	30	11	29
CTGGACTCACGGCGGG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CGCTTTCGTCCCCATA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
AATCTTAACGCGCTAT	ref_1924_RC	82	21	114	98	25	81	16	80	19	65
ACTCTACACTTCCATT	ref_1924_RC	13	5	18	14	4	11	6	8	3	8
TAGTATATTTTTACAG	ref_1924_RC	126	24	153	129	41	124	48	91	48	120
GCGGTAGACGCATTCG	ref_1924_RC	24	4	42	32	10	28	8	14	7	27
CAATTAGTTCAGTAGG	ref_1924_RC	151	40	164	182	58	143	59	139	57	123
TCGCGTCATAGGCGCT	ref_1924_RC	0	0	1	1	0	1	0	1	1	0
GCGTCTTATTTATGCT	ref_1924_RC	14	7	9	13	1	14	5	11	3	7
ATATTCTTACGATTGT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CGCCCATCTGGGGTTC	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TTAACTGTGAACCTAG	ref_1924_RC	162	50	198	209	68	172	59	155	56	164
TGGCCGACGGATAAAA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TTAGTTAATCGTACGT	ref_1924_RC	175	45	200	202	38	182	35	142	42	152
CTGCTGAGGTCAAGTT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
GTCCGTGATCATTTTG	ref_1924_RC	281	75	379	343	72	303	87	303	85	291
ACTCTACCTTTGTTTA	ref_1924_RC	22	4	22	16	7	11	6	10	7	11
AGGTGACCGTTCTTCT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CCACTGGGGACGCGCG	ref_1924_RC	292	71	348	286	63	302	83	230	61	217
CTCCGAATATGATGTA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CTGCTTTGGCACTGAT	ref_1924_RC	537	125	699	589	149	514	165	470	167	451
GTGTGATTCGAGGGTC	ref_1924_RC	29	19	46	37	12	45	13	29	11	29
CCTTATTGGATTGTAG	ref_1924_RC	26	21	28	29	25	29	15	40	31	24
AAAGGATTCCATCGGG	ref_1924_RC	37	7	41	48	6	35	4	45	4	25
TGTTTTTGACCCCCTC	ref_1924_RC	331	84	408	366	91	342	85	288	95	288
TGGACTACATCTGTTA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TACTCTTATCAGTCTC	ref_1924_RC	84	27	94	102	34	72	25	96	19	69
CCGCTCTGTATGAGCC	ref_1924_RC	34	9	48	59	18	43	11	33	10	38
GTCTACTTGTGGGTGG	ref_1924_RC	81	28	113	114	27	71	19	109	22	91
GTTTGGACAATAAATT	ref_1924_RC	63	14	82	63	10	66	22	54	18	59
GGGTTTTCTTCTCGCC	ref_1924_RC	116	27	146	135	21	87	34	120	27	117
CAAAGATGTAAACAGC	ref_1924_RC	86	27	108	98	27	106	21	79	26	60
ATGCAGTTGCGTCAGG	ref_1924_RC	85	34	118	110	34	86	42	88	21	89
TACGAGGATTAGTGTT	ref_1924_RC	399	126	454	445	135	389	118	397	151	347
ATGTTTCCCTCTCTTG	ref_1924_RC	111	21	144	124	21	102	23	107	25	117
ATTACATGACCATTTC	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ACTCCACATGTCGGGG	ref_1924_RC	52	18	53	44	17	41	15	30	10	44
GTCGCTACGATGCTAA	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
AAATGACCATTTCGGT	ref_1924_RC	98	29	129	124	36	100	29	93	32	90
TTCGGAAGTCCTGTAC	ref_1924_RC	18	28	31	25	29	13	34	12	29	16
CAATGTCTAGGTCTAC	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
AGATCAGGTTACCGCG	ref_1924_RC	73	22	60	70	16	49	12	56	16	58
CCTCGATGAACTTTAT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TCTAATGTGTGTATTG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CTTGAGCTTCTTCTCT	ref_1924_RC	202	68	251	224	58	171	71	188	53	165
TAGCGCGTACCGTTTT	ref_1924_RC	265	77	328	273	57	255	102	243	82	215
AACTGTCAAGTACAGA	ref_1924_RC	89	41	129	125	38	109	36	94	40	88
TTCTGCTGCGCTCCCT	ref_1924_RC	26	13	36	38	9	33	13	27	12	12
CTTCGAGGGTTGGTCT	ref_1924_RC	124	21	109	85	42	89	19	90	44	86
GGTTGGCAATGCTTGC	ref_1924_RC	160	53	232	200	52	164	62	160	46	169
ACGAAGCCAACTATGT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ATAGTTAGCCGACGGG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TAGCCCTTTAAGTGAT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ACTCTAATCTCAGGCG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ACGGCTTGGAGTTTCC	ref_1924_RC	4	2	3	0	3	1	0	6	1	1
ATTTTAAAATTTTGCT	ref_1924_RC	60	19	95	81	26	61	16	87	21	44
TTTGGCAATTTCGCAA	ref_1924_RC	180	64	208	204	46	173	58	130	74	138
AACGAGGTGCCCCGCT	ref_1924_RC	288	74	377	319	70	251	63	287	71	247
TCCGTTGCACATGCGT	ref_1924_RC	84	23	116	117	26	87	25	91	26	95
ATGTCCACCCATTGAG	ref_1924_RC	195	47	211	171	49	145	43	159	52	143
CTTATGTCTTAGGTCC	ref_1924_RC	86	30	90	66	18	77	20	78	36	74
TGTCGCGATGTTTTCA	ref_1924_RC	116	34	181	141	40	128	39	128	30	125
TGCTTTAGTGGCTTCC	ref_1924_RC	456	144	551	502	160	433	137	475	142	404
GACATGGTTGTCTTGC	ref_1924_RC	101	34	129	112	42	98	39	111	39	97
TACTTAAGCGGCCACG	ref_1924_RC	20	6	40	28	11	26	10	30	13	20
CCTCCTATTTCTTTGT	ref_1924_RC	125	29	148	143	32	121	30	129	45	123
AGTGATAGTTCTGTCC	ref_1924_RC	29	8	37	26	7	31	11	25	12	23
GTTTGTTTGGCATAAG	ref_1924_RC	125	54	159	145	43	149	49	140	41	143
TTCGGTTTTCCGTCCT	ref_1924_RC	171	41	216	165	34	159	43	159	49	159
TCCGTTATGAATGTTG	ref_1924_RC	53	16	48	39	9	39	10	60	17	36
TCGTGGCCTTGCTTTG	ref_1924_RC	275	68	312	318	72	240	73	253	100	231
GATACCCTTCCTGCGG	ref_1924_RC	126	38	126	137	33	116	40	104	29	97
TGGCTTCTTGTTGAGG	ref_1924_RC	60	28	91	92	21	69	21	83	20	75
TCTCTCGTATGTCTCG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CATAAAAGAGACCTAT	ref_1924_RC	177	69	262	223	58	187	75	206	60	158
AACTGGCCTCGAGTCT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CCGACCGCAACTATGG	ref_1924_RC	331	79	386	383	109	245	100	312	95	266
GGGGCGGCGTTACTTT	ref_1924_RC	6	0	12	10	7	10	4	20	6	8
CCACATGTATATGACG	ref_1924_RC	10	5	7	12	3	16	3	6	2	12
AGCAGCCGCTTTCGAG	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
ATACTCTTACGGGCTA	ref_1924_RC	33	13	40	33	11	32	11	43	9	25
AGATCACGCACAACTT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
GGCAGGACGCGCAACA	ref_1924_RC	806	230	1075	1035	235	699	233	824	245	758
GTAGCGGTTGTGGATG	ref_1924_RC	122	33	144	139	38	107	36	123	42	92
AATTTCATTATGTTGT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TCTGGCACCACACATT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
CACCACCCAAACAATC	ref_1924_RC	108	70	154	154	49	123	63	131	66	114
CTTTGGGCCTGAAGGA	ref_1924_RC	311	89	406	341	72	300	76	284	93	233
AACACGTTCAGTATGT	ref_1924_RC	260	60	304	264	75	222	77	262	81	216
CTTCTCACAGGCTGTT	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TGGGCAGCTTGAGTAC	ref_1924_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGGTGCGTACTT	ref_1924_RC	192	62	247	207	54	193	74	213	67	182
GGCAAGGTCTCCGCCT	ref_1924_RC	12	2	25	16	2	16	5	12	3	12
ATGCTCAGGTTGTCCG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
ATCATATGCTAGTCTG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTTTGTTAATCCC	alt_1514_upstream	3	6	8	3	5	5	3	5	5	4
ATATACCTTGGCCATT	alt_1514_upstream	9	13	30	17	12	8	16	21	10	11
GAGGTACCTCACGTTC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CGTATGGTTCGTATAG	alt_1514_upstream	30	29	29	31	30	29	37	24	22	26
CCTAGACTTACCATTT	alt_1514_upstream	6	52	14	16	57	13	51	11	58	8
GTCGATTATTCCACTC	alt_1514_upstream	6	14	11	12	18	8	3	10	13	9
CGTTCTCCGCTCAATT	alt_1514_upstream	32	43	52	48	42	35	43	38	44	49
TAGTTAAATAGCAGCC	alt_1514_upstream	18	19	18	20	18	13	19	15	20	14
CCACTTCCTCCCCACA	alt_1514_upstream	92	113	105	84	77	78	92	65	85	75
TACTTGATCCAAATCT	alt_1514_upstream	48	27	43	33	28	34	41	28	55	28
CTCCTCTGGAGCGGCT	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
ATATGTCTTCCGGATG	alt_1514_upstream	139	85	150	101	108	99	126	102	96	93
TATATATCATATTTTG	alt_1514_upstream	38	43	53	39	50	49	39	28	33	37
CCGAATTCTCTTAGCT	alt_1514_upstream	84	79	130	96	95	93	113	109	109	93
CGATCCATAGATTCAG	alt_1514_upstream	36	61	53	53	54	47	43	46	57	42
ATAGGACGGGACCGGC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCTTATTTTGCTA	alt_1514_upstream	79	64	71	82	70	69	75	64	81	53
AACTATCTGACGGTCG	alt_1514_upstream	40	46	47	30	39	38	57	33	36	30
GGCATCGAAAGATTCG	alt_1514_upstream	34	34	55	41	48	32	44	47	38	32
GTATTTATTGTTTTCT	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
ATCTGTTTCTATATCC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
GGATTATGAAGTTGTC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CCAACCATACAGACCC	alt_1514_upstream	65	71	89	80	84	69	67	69	87	65
TTTGGCCATAGGCGAG	alt_1514_upstream	50	34	52	38	46	32	36	31	36	28
TCTAACTAAGTGAGTG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
ACAGTTTGGTCCGCCG	alt_1514_upstream	10	27	24	12	20	12	21	13	13	24
ATATGTATTCCGGATG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TAGCATAAGGGTGCTC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGTCTCGAAATTT	alt_1514_upstream	38	46	66	72	55	43	40	32	41	49
CGTTCTATAAATACTG	alt_1514_upstream	225	218	276	203	226	184	225	180	258	186
GTGAATCGTTGTTGAT	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TATATTTGAAGTGTTA	alt_1514_upstream	12	15	23	19	12	10	22	17	10	9
CCGTGCTAGCGTTTCT	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTTGTTGGTTGTT	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCGTTCTGTGAAC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
GTTACAGCAACGAATT	alt_1514_upstream	74	62	77	53	44	79	58	48	70	56
GGCCACGTCTTCCGTG	alt_1514_upstream	75	74	97	81	75	66	106	66	99	52
TGTTTGTATGATCTAA	alt_1514_upstream	29	25	24	27	26	30	29	29	18	12
GCAGATCGCAAGATAA	alt_1514_upstream	17	23	35	21	19	25	21	13	25	16
TTACATTGAGCACCAC	alt_1514_upstream	8	4	6	6	7	2	3	1	7	1
CGCAATTCGTCCGCAG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TTCAATGCTTTCCCCC	alt_1514_upstream	13	14	16	17	25	27	24	21	29	16
TTTATGATAATTATCT	alt_1514_upstream	112	102	130	129	68	81	109	110	100	100
CGACATGAACTGCGAT	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCGCATAGTTTAC	alt_1514_upstream	8	8	15	3	10	12	13	2	4	11
TATTTCGCTGCTTGGT	alt_1514_upstream	66	58	69	60	57	53	68	46	79	57
CCAAATGAGGACGTTT	alt_1514_upstream	216	192	275	209	184	207	133	228	188	177
TCAGGGCCTAACTCAA	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCGATACAAAGCC	alt_1514_upstream	59	68	68	84	71	70	87	77	81	79
GGTCAGGAGCTAAGCC	alt_1514_upstream	32	28	31	31	27	17	26	27	19	18
GCTGGGTTCTCGTAGA	alt_1514_upstream	115	120	140	108	127	107	160	126	136	63
CTCCGCTTCGCCGTCA	alt_1514_upstream	50	41	47	60	50	58	55	42	49	37
ATCTGCATCTGAATGT	alt_1514_upstream	15	15	18	21	27	20	23	13	15	11
ATCTGATCCTTTCGCC	alt_1514_upstream	127	91	118	122	144	103	119	84	111	115
GTAGTCGCATCCCATA	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTTTCCCATGTTT	alt_1514_upstream	26	26	35	22	30	32	30	20	27	32
GCCGCACTGACGCAGT	alt_1514_upstream	7	19	15	16	28	19	18	18	18	9
GGCGTGATTCTGTCAC	alt_1514_upstream	71	83	101	87	77	76	91	71	72	87
TCATATTGTCCAAGAA	alt_1514_upstream	5	10	8	16	5	9	9	6	9	9
CGTAGGCGTTGCGTCA	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
AGACGGTTACGTTTGG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CACGACTTTTTCCGTG	alt_1514_upstream	5	10	7	9	5	6	4	5	2	4
GGGAGTTTCATATCCA	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TAGTACTAACACAAGA	alt_1514_upstream	30	35	37	40	33	25	28	19	28	29
AAAGATAAAAGATACA	alt_1514_upstream	83	84	119	87	87	108	75	83	66	71
TATCTTACCCGAGTGT	alt_1514_upstream	15	23	16	16	21	10	16	13	23	7
CTGCCAGGACGCCATC	alt_1514_upstream	58	65	73	70	68	57	64	58	61	66
TGTGCGGCCCTTGGGA	alt_1514_upstream	23	23	52	26	22	22	27	21	37	16
GTGTGATTTCTAGGAT	alt_1514_upstream	135	139	160	156	145	125	137	143	143	132
TGCTTGGAAGTAGGCA	alt_1514_upstream	17	19	18	10	15	13	15	9	18	13
AACTTCGTCACCTGTT	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTGTAGACTTCGA	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGATGGAGTGGAC	alt_1514_upstream	46	41	48	51	49	61	47	38	59	42
TCTTGCGGATCGGTGC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CCACATCCTGTATGTG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAGTATTAGTACA	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGTTTTTGGGTTC	alt_1514_upstream	15	10	19	9	15	16	10	9	16	16
TTGCCTTTTGCGATTG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCCCCCGTTACTT	alt_1514_upstream	40	53	51	54	61	48	57	47	66	60
GTCTTCTTCACTTTAT	alt_1514_upstream	39	27	68	51	45	49	50	34	42	37
TGACTCTAAGCTGTGG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCAGACCTGGACC	alt_1514_upstream	81	76	88	94	86	93	92	72	99	65
CCGAGAGAAGTCGTAG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
GCATCAGGTTTTCCCC	alt_1514_upstream	10	19	17	23	13	18	19	10	24	14
TCATCCGACTGTCGCC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TATCGGGAAGCTAACT	alt_1514_upstream	8	4	10	5	0	2	7	3	9	3
GCGTCTACTTTTTCCG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
TGCAACATGTTATCCG	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
CCACGGGGGCATTATT	alt_1514_upstream	64	49	53	65	49	63	50	49	56	55
TCCATCGTCGGGGGGC	alt_1514_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCCCCGCTTTTAG	ref_6044_new	16	21	17	15	23	16	27	17	17	12
CGGATACTTTTGGCAG	ref_6044_new	17	26	24	12	24	20	23	19	40	19
TCGTGTCGCATAATCG	ref_6044_new	4	11	6	6	9	2	11	9	6	6
CTGATGTGCACTGTAA	ref_6044_new	9	14	14	10	13	18	20	8	17	6
CCATGCAATCTAACCA	alt_6044_new	10	10	10	13	13	4	12	5	6	13
TTACAGCGTTGATCCG	ref_6044_new	7	16	14	11	14	18	22	10	22	17
TAACAGAATGTGATTT	ref_6044_new	12	8	4	5	11	5	12	7	6	9
ACACCCAACCTAATCG	ref_6044_new	0	0	0	0	0	0	0	0	0	0
GGCGCTGGACCTAAGC	ref_6044_new	0	0	0	0	0	0	0	0	0	0
TATACGCTTTGAACTT	ref_6044_new	49	83	42	45	76	46	76	56	79	41
TATCGAGGTGTGGCGT	ref_6044_new	0	0	0	0	0	0	0	0	0	0
GATCAATGTTGTCCTG	ref_6044_new	0	0	0	0	0	0	0	0	0	0
CGTAGTGCGGATGGGT	ref_6044_new	68	79	67	67	93	72	61	56	80	58
CTTGCCCTCTACTCGT	ref_6044_new	5	6	6	3	8	3	9	7	15	4
CGCATCTGGTCTTTCG	ref_6044_new	8	3	12	4	7	5	6	6	7	0
CCTTTCGTTTGCTCCA	ref_6044_new	74	99	87	56	102	66	128	57	113	55
GGGACGGTTCGAAACT	ref_6044_new	7	7	9	4	5	3	6	7	8	4
CACGTCGACTTAAGGG	ref_6044_new	47	57	55	37	62	41	73	45	67	22
TTGTAGGGGATTCCAC	ref_6044_new	0	0	0	0	0	0	0	0	0	0
ATCCGTGGGGGTATCG	ref_211_negative	2	6	4	0	2	4	2	0	4	1
TGGTCCGAGGTCTTAA	ref_211_negative	51	82	75	72	112	60	92	57	118	58
AGTGTGTAACGGGCGG	ref_211_negative	10	10	11	9	15	9	5	7	22	4
CCTGTTGGTGACGTAG	alt_211_negative	48	66	39	23	78	30	66	47	65	34
CTAGATGAATTGATGT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
GCATTTTTTGTGCGCT	ref_211_negative	20	46	29	24	35	14	34	18	36	13
TGTTAGCCCGCCTTCC	ref_211_negative	20	37	31	29	42	21	38	28	46	26
CCCAGTGGAGTATTCA	ref_211_negative	76	110	79	64	134	60	141	60	106	54
TGGCCATGTCCACCAC	ref_211_negative	32	77	70	80	77	48	73	49	92	56
TCGCCTAAACCAGATA	ref_211_negative	0	0	0	0	0	0	0	0	0	0
CGCAATTGCAGAGGCA	ref_211_negative	0	0	0	0	0	0	0	0	0	0
GTGCGTTTTAAAGATG	ref_211_negative	9	48	18	21	39	15	41	18	43	21
CTCGTTCTATGACATT	ref_211_negative	16	42	35	21	50	24	66	16	69	37
CACGCCTAGTTTTCCG	ref_211_negative	36	53	39	39	87	34	85	35	100	42
CGCTCCCTACGAGCCT	ref_211_negative	36	68	41	29	74	25	89	29	71	32
CTAGTAGTATTGTGGT	ref_211_negative	1	2	1	0	5	3	1	2	3	1
GAACGAAAAGAATTAA	ref_211_negative	11	19	12	16	16	9	13	16	29	15
TGGGTGAATTGCCCTT	ref_211_negative	123	233	164	133	219	105	232	95	267	100
TGCACTCTTTTCGCTC	ref_211_negative	25	34	18	16	45	15	38	19	55	17
ACGTCCAGGGATTACT	ref_211_negative	77	138	95	75	134	78	131	62	122	85
GCAGTTATAGACTTGA	ref_211_negative	13	31	5	12	17	7	27	7	13	5
TATAGGATACCGTGTA	ref_211_negative	0	0	0	0	0	0	0	0	0	0
ACCTGGGATTCATAAC	ref_211_negative	24	47	35	25	46	28	32	30	49	20
AGCCGTTTATCGAAAA	ref_211_negative	0	0	0	0	0	0	0	0	0	0
ACTCCAGCGCCTTGAA	ref_211_negative	5	12	6	9	11	4	18	5	28	12
CATAAGGGACGTCCCC	ref_211_negative	0	0	0	0	0	0	0	0	0	0
ATAGGATAAGATTCTA	ref_211_negative	18	20	16	12	25	17	24	13	29	10
TGGTTTTTCGGTACAA	ref_211_negative	49	69	61	43	92	51	93	40	85	38
ATTAAGCCTCGTAATT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
TCTGGTACGTTTTGGT	ref_211_negative	10	47	29	21	50	17	58	16	49	17
CACGCCTAGTCCATTA	ref_211_negative	25	25	15	14	37	24	35	16	31	8
CGGTCTCTAGGCTCGT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
TAATTGCTAAAAGAAT	ref_211_negative	41	56	46	49	81	32	78	42	82	41
GCCGACTTGTAAGGGG	ref_211_negative	0	6	4	5	7	2	5	4	7	4
GAGTCCAGGCCTGCGT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
GACTATGGGGTAGTGC	ref_211_negative	6	11	1	6	9	11	11	5	12	3
TATATGTGTCCGTTTG	ref_211_negative	24	31	20	18	35	18	43	17	34	23
TCCCACACTTGGCATC	ref_211_negative	40	82	41	46	108	50	93	35	88	35
GAGTGGGATCGTGAGC	ref_211_negative	18	36	22	18	31	14	32	15	29	17
AACGCCACTCTGTTGC	ref_211_negative	0	0	0	0	0	0	0	0	0	0
GGCCTATTGTTTCCTT	ref_211_negative	3	14	8	7	7	2	7	4	9	7
TGAGATTTAGTTCGAT	ref_211_negative	32	71	39	23	63	30	70	26	52	27
GCACAGGCCAACTACT	ref_211_negative	76	118	75	55	137	56	141	52	116	57
CACTTGAAAACTATAG	ref_211_negative	41	41	42	32	59	25	74	30	63	26
CACGCGCATTGGAGGA	ref_211_negative	13	12	15	9	26	13	20	7	20	13
TTCAGGCCGGAGTCGC	ref_211_negative	0	0	0	0	0	0	0	0	0	0
CTTTAGACAGTTTGGG	ref_211_negative	40	72	40	31	65	39	63	33	64	30
CCCTGACCGTCCGCCT	ref_211_negative	16	66	17	31	91	23	82	21	87	24
TTCACATATTGTTTTC	ref_211_negative	8	16	5	3	20	8	18	7	13	6
CCCTATTATTACAATT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
CAAAGGGTGCTCATCA	ref_211_negative	0	0	0	0	0	0	0	0	0	0
GGTCCAGTAAACTTAT	ref_211_negative	14	39	27	7	35	14	24	26	21	19
CTAGTGCAGGTGGGTC	ref_211_negative	0	0	0	0	0	0	0	0	0	0
ATGTACCGGATTGGAC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
ACATTCCTATCGCTTG	ref_211_negative	84	185	95	80	192	75	181	79	197	75
TCAGTCCCTAAAAGCT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
AACTACCAGGTCAAAT	ref_211_negative	3	9	7	9	22	3	11	6	10	3
GAGTAATTTAATATAG	ref_211_negative	6	14	9	5	14	7	14	13	16	6
ATGTTAAGCTACTTGC	ref_211_negative	0	0	0	0	0	0	0	0	0	0
TCTAGGTTCAGGATCT	ref_211_negative	2	6	2	2	8	0	8	0	11	6
TTTAGTTAACGTTTTA	ref_211_negative	72	118	95	71	133	64	137	50	127	54
CGTGTGCACATGATCC	ref_211_negative	0	0	0	0	0	0	0	0	0	0
GAATCTGTCGCCTGCC	ref_211_negative	6	17	3	2	3	6	6	3	8	3
AGCCAATCATTATATG	ref_211_negative	13	22	9	16	25	18	20	8	26	15
TCATCGTTTCCCACTT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
GAAGGTTTTATTTACT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
TTATGATAGATATCGT	ref_211_negative	0	0	0	0	0	0	0	0	0	0
CCCTCCGCGTCTGCAC	ref_211_negative	1	1	2	0	5	0	3	0	1	1
ATGAGCAAAGCTGAAC	ref_211_negative	5	8	8	6	6	8	10	3	18	7
ACCATGACAAGATGTA	ref_211_negative	24	50	21	16	40	27	48	17	50	34
TCAACCTTTGTTAAAT	ref_211_negative	6	25	6	9	20	7	21	5	20	8
GATGAGAGTACCCTCG	ref_211_negative	30	45	24	20	49	27	40	14	29	19
TAGAAAAGCTCATACA	ref_211_negative	0	0	0	0	0	0	0	0	0	0
TTGCCAGCTGCCAGGA	ref_211_negative	36	50	40	34	61	34	54	32	62	33
TTCCCTTCGTGTGCCG	ref_211_negative	2	16	1	1	32	4	12	2	26	4
AGCAAAGTCTCCTATG	ref_211_negative	25	41	33	17	44	28	38	17	49	24
TATTGTTCTCCGTCGG	ref_211_negative	19	36	21	13	37	16	31	12	42	23
TTCATTCAGCATACTA	ref_211_negative	15	17	13	17	25	17	33	6	21	6
CTATTTCGTGTCTGAT	ref_211_negative	0	4	0	2	1	2	4	7	6	2
CGATCTATCGGGAAGG	ref_211_negative	0	0	0	0	0	0	0	0	0	0
TTGGGTCGGTTTGGAC	ref_211_negative	21	41	19	15	47	12	30	15	36	20
ACTGCTATCACGACTG	ref_211_negative	23	38	21	24	28	19	34	14	37	19
TGGCTAACGACCCATC	ref_211_negative	70	129	103	59	112	82	132	88	128	78
TGACACTGCTCGGTAG	ref_211_negative	25	36	29	23	38	23	56	26	48	24
TATTTGGGTAGATTTA	ref_211_negative	17	28	33	21	22	18	35	11	37	21
AGTACATTCGGCCAAT	ref_211_negative	12	20	4	14	13	7	18	10	20	5
TTTGAGCAACCTGGTC	ref_211_negative	2	8	1	2	5	0	14	6	6	1
CTTCATTAATATTTCA	ref_211_negative	5	11	7	3	8	7	11	3	7	4
GGCAATTACTTCGAGT	ref_211_negative	6	15	13	11	15	14	9	6	9	9
GCAAGTTCAAGTAGCC	ref_211_negative	13	11	11	8	14	5	22	4	14	6
TGCTAAGGTTTTTTAG	ref_5958_new	0	0	0	0	0	0	0	0	0	0
CACGTGTGAATAAACC	ref_5958_new	0	0	0	0	0	0	0	0	0	0
CCTATAAAAATCGTTT	ref_5958_new	4	11	14	9	8	6	8	10	9	6
TTGGATTGCTCCTAAA	ref_5958_new	0	0	0	0	0	0	0	0	0	0
GGCACATGTGGGTAGT	ref_5958_new	3	6	5	4	2	5	7	5	7	3
CTTGGCATACATGTCA	ref_5958_new	8	9	9	9	16	3	8	7	3	9
TTATCTTCATACTACG	ref_5958_new	16	20	26	16	9	6	16	14	18	7
TGTCCCCTGCGTTGCC	ref_5958_new	3	13	7	7	30	12	11	10	18	8
TTGGGCTGGTGTCTTA	ref_5958_new	66	94	81	63	78	61	94	67	81	56
TGCCGATGTAGCGTGC	ref_5958_new	38	49	52	34	38	32	55	37	56	34
CGGAGGACTCAGTGCA	ref_5958_new	0	5	4	1	1	3	6	3	7	2
ACTCAATCCGTGTAAT	ref_5958_new	156	170	194	162	180	130	177	140	217	150
CACCTGTTCCTTTTGA	ref_5958_new	2	6	8	9	11	4	10	9	12	5
GTGTAATAATAACTCA	ref_5958_new	0	0	0	0	0	0	0	0	0	0
GCGGGTTTTTGACACT	ref_5958_new	0	0	0	0	0	0	0	0	0	0
CTTTTCACTGCTGAAA	ref_5958_new	19	12	22	20	23	18	44	19	23	18
CCGAATGAGATAGAGC	ref_5958_new	0	0	0	0	0	0	0	0	0	0
ATGTCCAACTGTTAGC	ref_5958_new	0	0	0	0	0	0	0	0	0	0
CGATATGATCTGTTGC	ref_5958_new	10	29	6	10	32	8	20	8	23	11
ACGTCATGTGACACCC	ref_5958_new	0	0	0	0	0	0	0	0	0	0
TGTTTTTAGCGCTGGG	ref_5958_new	0	0	0	0	0	0	0	0	0	0
TTTATGTGTCAGGCTC	ref_5958_new	73	110	107	79	119	80	132	86	105	73
ACCACGTTTATTCCGG	ref_5958_new	0	0	0	0	0	0	0	0	0	0
TTCTTGTTGACGCGCC	ref_5958_new	0	0	0	0	0	0	0	0	0	0
TCTAGTAAAAATCGTA	ref_5958_new	19	10	13	7	11	11	10	10	17	3
CAAGCTCGGCTTAGGC	ref_5958_new	234	284	243	238	282	208	282	179	308	204
CGACTGTCACACTGCG	ref_5958_new	0	0	0	0	0	0	0	0	0	0
GACTCTACAATTCTTT	ref_5958_new	5	6	8	6	8	7	8	3	11	6
CGTAGCCCGCCAAGTC	ref_5958_new	19	12	20	16	17	11	15	11	15	17
CGTCTAGTTAAATTAA	ref_5958_new	4	8	8	4	3	0	5	5	8	2
CTGCCGCCGCCGAATG	ref_5958_new	42	44	43	58	56	51	52	41	46	30
GCGGTCGCGCGTGGCG	ref_5958_new	32	38	45	43	57	48	43	40	61	29
TCGCGGTTTACCTAGC	ref_5958_new	52	32	52	42	55	38	58	33	64	38
TAGGTCTGCTTCCCTT	ref_5958_new	30	52	43	35	63	28	62	42	59	38
TGTGGGATTTTGAAGT	ref_5958_new	5	6	7	6	9	4	15	7	11	4
GTTCATGGTTCAGTAC	ref_5958_new	15	14	10	14	21	12	20	12	23	16
CCTAGCCCGACACTTT	ref_5958_new	26	25	31	27	25	20	47	17	35	16
TGCTTCTTAGGATGTG	ref_5958_new	47	36	45	40	45	22	45	23	51	37
TGTTTCTTGATTGAGA	ref_5958_new	0	0	0	0	0	0	0	0	0	0
GGTATATCCCAACGCT	ref_5958_new	59	66	60	62	71	38	51	42	87	50
TTTTCCAGTGTCTATT	ref_5958_new	18	32	14	15	26	14	18	11	26	15
GTCCTGTTCGGGGGGA	ref_5958_new	0	0	0	0	0	0	0	0	0	0
TTTGCCATGTTTCCCT	ref_5958_new	0	0	0	0	0	0	0	0	0	0
CCTTTGTCGGCAGGCT	ref_5958_new	7	17	12	6	12	6	20	10	20	6
TTGGTTCAGACGCATC	ref_5958_new	57	51	49	38	57	36	60	45	74	42
GCTTTTAAAGCTACCA	alt_5221_reverse	16	17	34	20	16	22	16	15	22	18
TTCTTCTATTTGTGAA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGCAGACGGTATT	alt_5221_reverse	220	168	284	233	171	210	148	217	151	205
GCCATGTGGGCCGTGT	alt_5221_reverse	38	26	58	37	39	38	35	55	40	38
TTGGATGTGTAACGCT	alt_5221_reverse	82	56	80	85	47	71	65	64	82	52
GAAGTGCTACTCGAGT	alt_5221_reverse	19	26	35	23	23	32	25	25	33	27
ACGAACTTCCCGACGG	alt_5221_reverse	21	19	7	9	13	17	20	14	18	13
CGCTATTTGTTTTTCG	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CGGGTATATAGGAGTT	alt_5221_reverse	18	7	14	11	10	7	9	7	5	6
TGTTTTTCTCAGCACT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CATTGCTTCGCCGCAC	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
ACAGTGTCATGCTTTA	alt_5221_reverse	26	18	32	21	21	24	28	24	24	26
ATTAAAATAGGGGAGC	alt_5221_reverse	27	20	36	23	19	30	18	21	26	12
CGTTTCCAGACTCGGC	alt_5221_reverse	11	6	18	15	7	15	11	12	14	13
AATGTGCGGAGACAAT	alt_5221_reverse	13	10	13	14	13	23	16	13	8	13
TTATCTTCACCTCAAA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GCTAAGCTAGTTTTCG	alt_5221_reverse	66	41	94	66	36	69	67	67	48	63
CGCAGAATCCGGCATA	alt_5221_reverse	29	44	43	50	40	35	37	37	33	30
GAACGGTTGCGGATTT	alt_5221_reverse	33	20	51	41	19	51	26	37	28	38
CGGAATGAGTCTATTG	alt_5221_reverse	57	81	32	45	119	30	117	34	97	33
AGGTTTCAAACTTTTG	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGGAAAGCGTTGT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
ACCACGGCGGTCAGTC	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TACCGGAATTGACGTT	alt_5221_reverse	168	95	186	150	109	140	96	156	99	167
AGGTAAGGTCACGCTC	alt_5221_reverse	58	50	67	60	45	61	46	49	57	39
GCGGTATTTTTGACTG	alt_5221_reverse	12	9	15	7	4	11	10	4	6	15
ATTATGAAGAGCTAAC	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTTCATATATAGA	alt_5221_reverse	19	9	15	12	7	12	11	12	18	8
TATTATAACTGTTGAC	alt_5221_reverse	60	52	74	58	49	44	48	63	51	42
AAATCGTGTGCCGAAA	alt_5221_reverse	24	15	15	10	6	14	8	15	8	9
GGGACCACGCGACCTG	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCCAGGTCAAATT	alt_5221_reverse	19	20	39	16	29	32	33	18	28	15
GCTTGTTAGGTTTCCC	alt_5221_reverse	79	51	96	86	53	92	55	97	67	78
GCCTCTCGTTAGACGG	alt_5221_reverse	203	170	283	251	180	212	196	219	177	208
TTTGTTAGCTCTTGGC	alt_5221_reverse	19	9	23	23	9	18	19	16	15	10
ACACTCCTGTCCACGG	alt_5221_reverse	5	15	3	3	14	4	17	4	13	3
AATCGGGTAAACTTCA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCTCGGTCAGAT	alt_5221_reverse	25	22	27	29	18	21	17	16	23	28
GAGCGCTTTGATTCGT	alt_5221_reverse	25	21	25	29	14	16	16	29	21	29
CTACTAAATTAGTTTA	alt_5221_reverse	17	19	16	16	15	10	18	15	25	21
CGGGTATAGGGTGTCA	alt_5221_reverse	22	13	28	15	27	27	21	20	18	19
CCTTTAACCCGCATTT	alt_5221_reverse	38	44	64	56	44	49	42	36	56	41
CCAAACCACCATGAGA	alt_5221_reverse	2	2	5	5	0	11	9	4	7	4
TTAGGACGACGGGTTC	alt_5221_reverse	107	57	90	91	68	80	70	92	58	77
GCATCATATATGCTTT	alt_5221_reverse	219	166	231	229	161	210	150	191	205	170
TAACCAGCCTGAGTTA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GCCCTAATCCGTTGTG	alt_5221_reverse	25	12	24	35	12	29	24	29	16	19
CGCCCGTGGTATATTC	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
ACACTGTTCGCCTCGT	alt_5221_reverse	17	20	12	13	14	13	22	11	14	12
TGAAAATCACTTGCCC	alt_5221_reverse	149	88	166	152	95	176	108	148	106	151
TTCATTTTGCTCCATC	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGTGAGTCCTTTT	alt_5221_reverse	60	58	73	68	55	71	61	56	60	63
TTCTTTTCGCATTGCA	alt_5221_reverse	30	8	22	17	25	13	11	17	16	18
CTGGTCGGTGGCAGTA	alt_5221_reverse	43	20	53	38	34	40	30	40	27	47
TCTTCAGAGGTCACCT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGCTCCCATGCAG	alt_5221_reverse	19	10	23	24	15	23	17	13	19	14
GTTAATCTGCTTTCCA	alt_5221_reverse	5	11	9	7	3	7	8	5	5	3
TTCCTGTTCTAATTGG	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TCGCGCAAACATTTAG	alt_5221_reverse	5	1	4	3	6	2	0	5	0	1
CTCGGGTCGGTTCTAC	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTTTAATCTATTA	alt_5221_reverse	3	17	9	6	16	7	34	5	18	8
CTGTGCGTCCTCGGAC	alt_5221_reverse	14	5	2	7	4	6	5	10	12	7
CCATTGTTCGCTCTCG	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TGGACCTCACATAGAT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CCCCAATGTATCTCGA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TATCGGTCAGCGGTGG	alt_5221_reverse	9	3	5	10	6	1	9	9	8	4
GTGTCTTAAGACCTAT	alt_5221_reverse	14	12	9	15	6	8	7	9	9	11
GAAACTCTTCAACCAC	alt_5221_reverse	64	49	91	68	50	76	70	84	48	59
ACCGTGACCTTTGAGA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGACGCAGTGGAT	alt_5221_reverse	19	13	29	28	10	16	16	35	10	13
TCTCATCGATGATGCT	alt_5221_reverse	25	19	32	24	19	21	14	19	17	17
TGGTTACCGTTCCCCA	alt_5221_reverse	3	0	4	3	2	2	4	5	2	1
CATGACCCACCAGACA	alt_5221_reverse	36	19	31	27	33	35	31	27	22	31
CGTTACAGCTTGGTCT	alt_5221_reverse	64	51	78	59	29	68	51	60	32	44
CTTCGTGAATGAGTAG	alt_5221_reverse	51	45	52	53	30	33	42	45	61	30
ACAGGATAAGAGCAGC	alt_5221_reverse	2	0	0	0	2	0	1	1	0	0
TGCTCGAAGAATGCTT	alt_5221_reverse	7	8	8	4	12	10	4	11	3	10
GTCTGACACAGACATA	alt_5221_reverse	32	30	36	42	31	34	35	34	35	23
CTCTACTCCTTGTTTA	alt_5221_reverse	38	19	29	21	33	21	12	24	19	23
TGGCGAGCCAATGCTT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCTGTTGTCTCCA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CTGTACGCTTTCCTTC	alt_5221_reverse	97	57	143	114	76	75	58	109	77	81
TGATTCCCTGGATAAT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
CGTGAATAATATAAAC	alt_5221_reverse	34	11	20	19	11	27	15	19	29	12
AGGCACAATAACCCGT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TCATCTATCTTAAAGA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGGGAACCAGGTC	alt_5221_reverse	168	141	208	175	143	170	150	164	156	148
CGTCTTGTAAATCGCC	alt_5221_reverse	25	6	22	13	12	17	16	16	14	12
GATCCGTATATCATCC	alt_5221_reverse	16	8	20	20	15	16	12	23	12	21
AGACAGGTCATGCTTC	alt_5221_reverse	31	22	50	32	22	50	32	41	39	46
TCTCCTGGTGCTTTAT	alt_5221_reverse	78	89	79	61	94	56	96	74	109	70
ACGGTGTGCGTTCTGG	alt_5221_reverse	83	56	112	102	63	93	53	97	69	78
GATGCCATAATCGGCG	alt_5221_reverse	27	17	28	35	15	24	23	19	21	17
CATTACCCTGTTGGAG	alt_5221_reverse	2	1	3	4	2	6	2	5	3	1
GCGGTCCCGCCAAAGT	alt_5221_reverse	95	67	133	91	68	72	59	91	58	64
CCGTAGTTGCCGTTTA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTTAACTCAGTA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GTGAATGTTCTCCGTA	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
AACGTCATATCCAAGG	alt_5221_reverse	22	17	32	28	16	21	19	25	16	16
TCGGGGACTGTCGGAT	alt_5221_reverse	224	185	280	261	183	230	181	231	180	201
CCTGTCCTCGTTCATC	alt_5221_reverse	12	9	26	13	9	20	14	9	9	9
ACGTTATTTTTTCACT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GGAATATTCGGAATCC	alt_5221_reverse	40	30	54	42	14	48	28	32	23	37
TATTACGATCATTTCT	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTCTGCCTGAAG	alt_5221_reverse	0	0	0	0	0	0	0	0	0	0
GGATCGCCCGTTCGGC	alt_5221_reverse	34	30	53	42	26	40	31	37	31	33
TCGACGAAGGCTTATC	alt_5221_reverse	4	4	2	1	0	1	3	1	3	1
CAGACGACTTTTGGTC	alt_5221_reverse	78	49	74	60	49	82	67	51	67	79
TGTACATACCCGCTTT	alt_5221_reverse	49	43	33	38	40	32	39	34	45	26
ACGTTACCGCTCGGCT	alt_5221_reverse	30	30	27	34	23	17	37	24	28	32
GATCGTGAGGCTGCTG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CTGTATGGTAAGATGT	ref_1659_missing	1	0	0	2	1	0	1	3	0	0
GCCTATAGGATCAGTT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TGCAGCTGGGCAATAC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TCGTTTTAATCCCGAT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
AAAGAAGCTATCGTCG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TCCTTCCTGCAATGGG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
ACGTCCTCGCGCGATC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
GCCTACTTGCGTAATC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CAAGCGTCTTAAGGCA	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CACGCTCAAAAAGCGT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TCGGCAACACGTGTTC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
ATGCTCTGATCTATCC	ref_1659_missing	8	13	10	10	9	8	13	17	12	10
CCACCTTTTCAGCTGG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CACTTGACCCAATAGT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
GCCATGATACCATGCA	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TGGTCCTACTTATCGG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CCTTTAGTCCCGGGCT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CTAAACCATTCCTTCA	ref_1659_missing	1	2	2	1	1	0	2	1	0	1
TCCAATTTCGGCTGCC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
GTATCCTCCGCTTTAG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
GATTGACCTTCATATG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TTATGCCCACGCCGTG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CAACCATGCTGTATTG	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CGGTGCTGAACTTCTC	ref_1659_missing	6	3	3	2	0	3	5	0	5	6
CAGCGACGGGATGAAA	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CTTCACATTTCGTCAC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TAGCCAAAGGACTGTA	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CCCGTTTTTTAGTGAA	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TTCATGTCTGTAGTCT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
CGACATTGGGTCGTTT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
GTTCTCTCTGATCATA	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TAATGGTATCCAGACC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
AGTCTTCTATCCCTCT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
ATAATCATCAGGTTGT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TCAAGTACTGCTAAGC	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TTTAACATTTTGTTTT	ref_1659_missing	6	22	12	18	12	11	22	11	19	10
TTGCCTAGCTACCCCT	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
GGTAAAATACTACCGA	ref_1659_missing	0	0	0	0	0	0	0	0	0	0
TCTGTATGTCATGGCT	ref_1659_missing	1	0	0	0	0	0	0	0	1	0
CGAGCTTTGGCTCACA	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
GATGTATGTGTTACCT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CCGGAGAACTGCAGCT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
AGAGATCATTTTTCCC	ref_2728_missing	15	7	13	8	11	15	10	12	7	14
TACCTTGTGGATGCTG	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CGAAAGAGCACGTCAC	ref_2728_missing	28	30	35	40	40	22	28	38	36	30
GGGAGATCCCTTCTCC	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
AAACTCTTCTTGTCTT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CCTTCTTTATTTAGCC	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
GCATTTAAATAAGGAA	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CTTCCATTCACATCTA	ref_2728_missing	10	8	8	5	15	6	14	5	16	4
ATCGTTAAAGAAGCCG	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CCACGTTGGTTCGATC	ref_2728_missing	4	5	6	3	10	10	7	3	11	4
TTGAGTTAAATTCCCA	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
TCAACATGGCTGACAG	ref_2728_missing	10	17	9	13	13	12	16	7	22	9
GGATTTTGTTTTATTG	alt_2728_missing	52	43	49	33	51	51	53	41	52	36
CTTCTAGGTCTGGTAG	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
GTTCTTTGCTTCGTGT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
TTGCTCTGTGCGATAT	ref_2728_missing	3	9	5	5	10	8	5	6	5	4
TTATGTCCCAATCCGG	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCCGCCGTTTCT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
TATGTAATTCTAGGCT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
GCTTCATCAGCCCTTG	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CATTTGTTGACTTACA	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CGCGATTATAACTTCT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
TATTAAACCGCGTTGC	ref_2728_missing	8	9	13	7	12	15	10	7	16	10
CATTTGGACTCAATGG	ref_2728_missing	6	22	24	10	10	9	10	6	18	9
TTCATTAATGGTCACT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
ACTCTAAGCTCCCTGT	ref_2728_missing	14	22	18	16	15	21	16	10	24	10
GAACCTGGCAATCGAG	ref_2728_missing	11	14	10	10	19	12	13	12	14	8
TAAACAGACGTCGGTT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
GTCAGTCCATGGTGCT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CCACATAGTGGAGTGT	ref_2728_missing	41	70	54	30	91	55	85	46	79	27
AGTTACATTCCTCACC	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
TCCGTTATACGCATTC	ref_2728_missing	4	6	7	5	9	5	11	6	10	3
CTCTCGACCTAGCATT	ref_2728_missing	20	17	11	20	27	17	28	12	20	20
ATTTAACCGCGTTTCA	ref_2728_missing	13	34	30	36	18	21	29	17	28	29
GCGATTTTAATCAGCG	ref_2728_missing	8	27	11	19	21	18	23	13	15	17
GCGAGTGACATATATA	ref_2728_missing	23	34	6	12	30	15	33	18	21	15
AGTAGTGGCGGGTCGG	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
GTAAGACGGTGGATTG	ref_2728_missing	27	30	40	39	32	33	39	41	33	25
GTCCCTGTGCCGGTGA	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
TCGGTCACAGCATCTT	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
GCTTAGGCCGCACTAC	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CCCGATCTCAGGGCAC	ref_2728_missing	0	0	0	0	0	0	0	0	0	0
CAGCCGTCGGTAAGGG	ref_2728_missing	3	16	5	1	18	1	13	8	18	1
GTGACACGTTTTGCCA	alt_5209_fdr	19	26	25	16	32	21	33	28	27	13
AATTAGGTGTCGTCGT	alt_5209_fdr	7	9	7	1	10	8	10	5	7	5
AGTTGCCGGGGGGATA	alt_5209_fdr	17	15	21	21	18	15	19	19	22	19
GTGACAGAACGAGAGC	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
CATGATGCTCTCTCGA	alt_5209_fdr	36	77	51	46	70	37	67	45	74	23
CAGCGATGTACGGTTT	alt_5209_fdr	12	8	9	2	7	9	9	3	6	5
TTGAAATCTTCGGTTT	alt_5209_fdr	9	14	19	16	14	15	12	14	11	8
TATAAGATTTTTGGCA	alt_5209_fdr	50	69	46	59	59	45	81	45	92	40
TCCTTTTAAAGTCTTA	alt_5209_fdr	46	47	53	39	52	32	40	32	53	29
AGTTGTATGCCCTATC	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
ACGGCTGTTCACGAGT	alt_5209_fdr	48	78	67	42	57	41	92	51	89	31
AATTGGTAATGTCTCA	alt_5209_fdr	10	17	14	15	21	7	21	12	33	10
CCTTATGTAAGCTCCG	alt_5209_fdr	2	2	2	2	7	3	7	0	3	1
CGGTTTATTCGCCCCT	alt_5209_fdr	25	54	34	28	49	27	54	22	65	26
ACACTAACATCCCAGG	alt_5209_fdr	83	97	63	72	77	57	71	56	69	55
AAAGAACTGATGGGCC	alt_5209_fdr	31	26	43	29	44	33	41	37	33	18
GGTTCTGTAGTGTTAA	alt_5209_fdr	15	29	20	16	23	13	17	11	25	15
ATTTTATACGCCATTC	alt_5209_fdr	11	9	13	9	18	18	20	13	11	10
CTTAGCGGAATCCGTG	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
GTGTATTTTAAGACCC	alt_5209_fdr	25	48	32	29	61	22	52	30	54	31
GCTTCGTGTTTGACCC	alt_5209_fdr	54	54	45	36	55	42	55	37	78	44
GTTTATGACTTTGTGT	alt_5209_fdr	14	24	20	10	35	15	30	7	25	15
CTTGTTTCAAATTCCG	alt_5209_fdr	3	2	1	1	0	0	0	0	1	0
CATACCAATGCCGCAC	alt_5209_fdr	80	84	98	87	102	78	117	76	124	73
AATGGGGTTTCTGAGC	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTACTTGCACTGA	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
TAGAACATAACTAGGA	alt_5209_fdr	33	59	40	30	35	46	62	23	78	33
ATATTATTGAGTCTCT	alt_5209_fdr	81	123	89	99	88	77	108	56	135	70
AGTTAACGCCGTGATT	alt_5209_fdr	4	18	8	7	10	6	6	5	10	7
AGTAGATACAGGTCAT	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCGATTTCGCAC	alt_5209_fdr	17	23	12	12	12	9	22	9	21	8
TTTGGTATGGAGTTAC	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
GTTCATTGGGGAGTAT	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
TTAGCACCGCTCATGC	alt_5209_fdr	8	11	8	1	9	7	10	2	5	8
ATTTGTCCATTATCGC	alt_5209_fdr	22	27	23	23	35	21	44	19	25	30
ACTTCGCGTTCCGGGT	alt_5209_fdr	17	41	25	21	28	25	24	29	16	20
TACCGATTCTTTGTCC	alt_5209_fdr	3	5	3	2	2	2	6	1	3	3
AAACATGGGCATCCAT	alt_5209_fdr	8	6	9	6	2	4	4	3	7	9
TGCGCCTGTGTCTCCT	alt_5209_fdr	7	10	11	4	10	2	9	5	10	5
TGTTAAGAACTCTACA	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
CACAATAAACATTTCA	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
GGCTACGCTAGTGCGC	alt_5209_fdr	41	67	39	38	60	40	73	55	74	34
CTCTCGATGTACCTCA	alt_5209_fdr	10	16	13	9	22	15	11	12	22	12
CATAGCGGCTCATGAC	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTTATCGCAGTTC	alt_5209_fdr	17	10	13	6	15	8	16	12	30	7
CGAGATGGGGTTCCCT	alt_5209_fdr	8	21	11	4	16	13	9	9	12	8
GTTTAGTTCGATGGAC	alt_5209_fdr	78	108	85	60	145	85	125	65	105	83
TTCACCTGTGGAGAGT	alt_5209_fdr	24	45	33	19	31	12	37	14	33	14
CTATGCGGCAGCTACT	alt_5209_fdr	21	31	30	39	42	28	41	29	53	21
GCGTTGCTTCTTAAAC	alt_5209_fdr	22	35	35	22	37	31	31	14	34	17
TTTTGCGTATTTTCGG	alt_5209_fdr	6	5	10	11	16	5	13	6	8	8
AGCCTGTTAGCTAGCT	alt_5209_fdr	25	22	28	13	23	19	42	31	43	13
GCCAATTCAATAAGCT	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
AGGTCTACTAAATCGG	alt_5209_fdr	4	8	12	6	11	10	15	2	13	4
TTATGGTTAGTTCAGA	alt_5209_fdr	42	82	55	47	91	41	74	52	77	45
TCTGCTGTTATCCCCA	alt_5209_fdr	109	143	125	88	153	124	112	97	142	84
ACGGCTGGTCCCGTTA	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
TATGTTGCTTCGGTTT	alt_5209_fdr	3	22	12	5	10	3	13	12	8	8
CTTACGAACTTGGCAC	alt_5209_fdr	108	160	126	117	172	102	191	122	215	112
CGTTTATCTCAGACTT	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
AAATTGTTCTGTTATT	alt_5209_fdr	8	8	5	4	15	7	9	15	19	17
CTGTAGTGATAGTTGA	alt_5209_fdr	14	34	17	32	29	15	31	19	53	15
CGTATTATATTTTGTC	alt_5209_fdr	27	40	41	43	45	22	48	22	41	22
TGTGAGTCGTTAAATT	alt_5209_fdr	12	29	13	16	30	13	20	16	18	8
TAGCCCTCGCGTCCCT	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTATTTGACTATC	alt_5209_fdr	12	13	16	5	8	7	14	5	16	10
CGGTTGCCTACGCCGT	alt_5209_fdr	25	26	23	16	27	25	30	13	26	10
GGTTCCTGTCAGTGAT	alt_5209_fdr	23	44	36	23	38	29	43	20	34	22
TGCTCGTAATTGCTCC	alt_5209_fdr	74	79	60	70	95	56	95	78	109	51
CCGGACTTCTATCTGA	alt_5209_fdr	3	37	2	2	58	1	41	9	46	5
GATTCTTGTGCAGTAC	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
ATACGGTCTTCTAGGT	alt_5209_fdr	76	108	99	55	91	94	111	74	115	71
CGGGTTGGTAACGTCC	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
TCGCATTTTGTTTAGA	alt_5209_fdr	44	63	57	50	33	48	80	37	38	42
CCGTTAACTTACGCAA	alt_5209_fdr	17	60	20	14	49	28	58	28	68	18
GGATGATCTCTATGGG	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
GGACTTGGGGCAATCA	alt_5209_fdr	34	32	25	30	38	25	24	23	33	20
AGTCCTTTTGTGAGTT	alt_5209_fdr	4	5	2	2	2	2	5	0	2	1
AGCATGGGTCCCGGTT	alt_5209_fdr	54	107	100	75	93	74	107	52	102	68
GCACTTACAACATTCT	alt_5209_fdr	2	9	6	2	6	2	2	5	6	1
GAAGGAAATATTTTTA	alt_5209_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGGTTCTCTATTT	alt_4832_fdr	77	137	99	77	144	85	135	81	165	69
CAAGTGAATGGCTGGA	alt_4832_fdr	26	36	29	39	41	33	36	32	36	26
AGATGTTTTACGCAAT	alt_4832_fdr	254	260	303	259	282	231	307	204	283	222
AATTCACTGTATCATC	alt_4832_fdr	49	64	67	63	68	50	51	48	71	37
ACCGGCACAACTGGAC	alt_4832_fdr	11	66	14	15	47	12	59	11	68	12
CTTCTATCAACCGAGA	alt_4832_fdr	4	9	5	5	5	4	9	4	15	5
GTAAAGTTACCCCAAG	alt_4832_fdr	16	10	14	15	14	13	11	15	14	14
TCTAGGCCAGTTGTAC	alt_4832_fdr	13	12	15	9	13	10	14	9	13	15
GGAAAACAGCCCTAGT	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
ATCGAGCCCGCCTTAA	alt_4832_fdr	14	14	18	10	11	9	11	12	13	11
GGGATACTGGTGTTGT	alt_4832_fdr	28	34	25	38	38	30	28	37	38	24
TCCCGCTGGGACGTGC	alt_4832_fdr	97	78	98	76	93	72	104	72	96	68
ACCTTAAGCTATTTTC	alt_4832_fdr	17	15	19	12	7	15	18	12	20	18
TCTCTTCGGGTACGAG	alt_4832_fdr	100	113	90	95	115	90	100	80	111	74
AGGCCCAGTAGTATCG	alt_4832_fdr	32	34	51	38	45	37	61	35	42	29
AATAGTCAAGATGTCT	alt_4832_fdr	5	5	4	4	6	7	9	9	8	7
ACTCTGTTTCTGCTAA	alt_4832_fdr	59	50	43	53	46	40	65	31	47	37
CTCCGCTCGTCCAGTG	alt_4832_fdr	14	39	10	13	42	6	48	13	35	11
TTAACGCCGATAAACA	alt_4832_fdr	115	117	139	98	108	96	103	76	102	77
GCCCGTGGAATTATAC	alt_4832_fdr	429	391	446	369	456	368	459	359	455	373
GGCTACCTTTCAATGC	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
GCTGACCTGCTAGCCC	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
TATAAAGCATTTGGTA	alt_4832_fdr	27	21	28	27	19	27	32	18	31	21
AGCTCCTGTGTGGTAG	alt_4832_fdr	6	2	3	0	4	0	5	3	3	1
ATTACCCGCTAATGTT	alt_4832_fdr	15	16	16	10	12	13	13	9	11	9
TGCCTGGTAACGTCCA	alt_4832_fdr	40	49	38	27	56	22	57	29	55	21
GGGTTAATATATGATG	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTTTTGTGGTGGA	alt_4832_fdr	51	48	58	44	67	43	57	43	50	44
TCACGTCCGTGTCAGG	alt_4832_fdr	19	48	33	22	36	14	38	20	35	18
ATCGGGGTGTCTTAGA	alt_4832_fdr	20	12	29	24	33	22	22	20	35	27
TTCTCCGTCTCTATAT	alt_4832_fdr	22	21	21	22	18	15	16	9	24	12
CTTTGGGGTGTCGCTC	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
CTTTCTCTACGTCGAA	alt_4832_fdr	44	45	53	45	38	32	70	32	55	42
CTCCGCGCTAAGTCCG	alt_4832_fdr	8	19	19	19	20	13	32	14	19	8
TTGTGGTACACGTGGC	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGTCCAGCTCAAG	alt_4832_fdr	32	73	53	44	87	55	74	35	85	51
TGACATTGCGATCGGT	alt_4832_fdr	20	14	14	26	15	13	28	10	16	19
TCTTCAGAAGACCAAC	alt_4832_fdr	53	99	80	83	125	78	98	68	109	63
ATTAATGCGAGTAATG	alt_4832_fdr	1	2	1	2	5	0	3	1	4	2
TTCAAGGCCCACCGAT	alt_4832_fdr	296	292	343	298	270	331	336	217	349	267
TACTTTCCTGCTTTGA	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCTAACTCTGAAA	alt_4832_fdr	2	2	5	4	7	3	7	3	0	6
TGTGCGATTCACGAGC	alt_4832_fdr	10	12	12	16	15	7	21	6	8	16
ACCGGTAGAGCAGCTT	alt_4832_fdr	24	29	29	22	36	32	34	23	34	14
TATGTATAAGTCCGCG	alt_4832_fdr	13	17	17	14	15	14	9	16	16	8
GGTGTGGTACTCCCTT	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
TTAGATTCGATGTATA	alt_4832_fdr	49	59	61	46	69	51	51	39	55	50
GTGTCTTGCACGTAGT	alt_4832_fdr	8	4	12	6	2	6	6	3	8	5
AAACGCAAGGGTATTA	alt_4832_fdr	40	41	52	29	36	38	27	30	34	24
AACTATTTATGCGAGA	alt_4832_fdr	15	19	18	13	21	24	16	14	16	11
ACCTACTTTGGCAATT	alt_4832_fdr	32	42	42	35	29	29	57	28	59	23
GCACGGGCTTAGTTTA	alt_4832_fdr	32	49	57	45	52	32	52	44	67	36
TAGGCTGAGGTGTAGT	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
AAATCGTTTAACCGCC	alt_4832_fdr	21	30	29	23	27	26	32	28	23	29
CGGTAAGAATAAAGTT	alt_4832_fdr	35	39	44	27	25	31	28	24	49	12
CCATCAGTAACCATTA	alt_4832_fdr	59	48	49	45	74	38	67	37	62	38
GCTCCTCGACGGTACG	alt_4832_fdr	4	26	7	5	25	1	27	4	21	4
GTACCACTGAGTTCCT	alt_4832_fdr	30	34	26	28	33	19	42	31	37	21
CTCTGGTGATAGTGCG	alt_4832_fdr	28	28	44	31	37	35	34	33	31	27
GGACGGCTCGGGTAGC	alt_4832_fdr	25	26	27	26	27	32	25	32	28	28
CTCGCCTCCTCGCTTT	alt_4832_fdr	16	24	25	18	16	11	32	12	33	15
CCATCTCATAACGTTA	alt_4832_fdr	8	19	17	7	17	14	12	7	22	8
CACGCGAAACGTTATT	alt_4832_fdr	22	43	44	23	38	16	32	30	32	27
TGTTGACGTTATTGCA	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
GTGATAACTATATTGT	alt_4832_fdr	19	27	16	27	26	22	34	19	20	11
AAGACTTTCCGTCATT	alt_4832_fdr	23	28	27	20	22	25	20	37	23	18
TGCTGGTTCACATCTT	alt_4832_fdr	110	107	107	100	103	90	107	108	128	101
GCTATAATTAAGATCC	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCGCGCCGTGGTG	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
GAGTTCGAACCCGCCA	alt_4832_fdr	12	12	13	7	8	12	15	14	16	6
TTCGCATGGGGTAGCA	alt_4832_fdr	56	70	91	73	73	65	69	66	79	53
GTATGATCTGATGCAA	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
AGCGAAATGCTATTGT	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGTTCAGCCAAAC	alt_4832_fdr	55	70	61	53	66	52	55	38	60	42
GCTCATGATGCACTTG	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
CACGTTTCTGGGTATC	alt_4832_fdr	6	9	3	7	9	2	3	2	4	3
TAAGGCTTAAATCTCA	alt_4832_fdr	134	116	151	109	151	108	118	91	139	71
GGTCTCGGCTATGCAC	alt_4832_fdr	87	94	98	99	90	85	91	91	111	80
CTCGTCTATTGACGCG	alt_4832_fdr	178	176	203	161	233	147	207	151	220	167
TCAACAACCAGAACGG	alt_4832_fdr	60	81	70	53	91	54	70	66	91	49
GCTCGCCCCGTATATC	alt_4832_fdr	109	152	154	134	174	142	177	119	168	122
CGATAATAAACGCTCG	alt_4832_fdr	14	18	28	18	17	17	13	16	14	12
TTACGGCTATCCCCTC	alt_4832_fdr	13	13	26	24	42	25	23	28	34	18
TAAGAGTTATGCTGAC	alt_4832_fdr	35	45	43	37	34	36	47	36	45	48
GTCCAGGGTTAGTTTG	alt_4832_fdr	5	8	5	0	14	3	13	4	9	2
TGGACCATCATTACCT	alt_4832_fdr	27	67	30	32	47	21	32	29	44	29
TCTTTCCCAGCTAGGT	alt_4832_fdr	21	23	27	19	19	18	18	23	18	15
GCTAGAGAATCAGCCA	alt_4832_fdr	0	0	0	0	0	0	0	0	0	0
TAGGGCAAGATCGCGA	alt_6119_new	133	20	150	167	37	126	27	139	36	109
TTTGCGATACGATTAC	alt_6119_new	32	11	35	51	10	30	11	35	10	25
TTGTCCGACCGCGGAC	alt_6119_new	0	0	0	0	0	0	0	0	0	0
AGCTGCCATTGGTTCT	alt_6119_new	445	132	548	547	126	446	109	453	122	403
GTGTCCCGACGCCCCA	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GTCCGTACACGTGAGT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CACGTCTGATTCGGGC	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CTGGTGTTTCTTCGCC	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TCATTAGTTCGGCAAT	alt_6119_new	107	31	136	111	35	96	40	113	45	97
TCGTCATGTAAAAACC	alt_6119_new	23	6	35	27	4	15	6	20	6	19
CCTCTTTTTTAGGGCT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
AGCGGGTACGTTCATA	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CGCACTCAACACGTGC	alt_6119_new	109	36	111	103	27	107	24	101	44	75
CAGGGATGCACTTTTT	alt_6119_new	263	121	377	290	94	246	98	257	102	232
ATCCTCTCGGTCGTGC	alt_6119_new	283	89	360	356	81	261	76	233	86	253
TTTCTTAGCTTCGCGC	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TTTTTGGTCCGGGGGG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
ATGTCCGTATCTAACG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CAGTGTCTACCTTCTT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CTTGGCCATTGTTGTT	alt_6119_new	0	7	0	1	0	2	7	2	0	1
CGTCCCCGAGCAGGTA	alt_6119_new	22	5	29	35	6	22	11	24	6	27
TTCAGTCCGACCTCAT	alt_6119_new	8	1	8	9	4	7	3	14	4	5
TTTAAGCTGACGTGGG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GACCGGTTATGGCGTA	alt_6119_new	168	37	205	181	39	172	43	171	34	145
ACACAGGCTCAACTTA	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TCTGGGACCGGTCCGT	alt_6119_new	10	5	9	21	4	14	11	15	2	10
GAGCGCCTGGTTGCGG	alt_6119_new	142	38	122	111	43	124	35	125	43	113
CTCAGCGTCGACTGTT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TTTCGTTTTGCCGTCT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GAATGCTGGAAGAAGC	alt_6119_new	200	53	222	208	53	191	45	193	31	177
TGTTCTAGCTACGTGG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
ACTCAGGCTCATACTG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
AAGCTGGCGTCGTATT	alt_6119_new	65	16	76	60	13	76	14	58	15	53
TTTCGTCTTTTCAGCG	alt_6119_new	40	11	38	47	8	42	7	34	10	37
TTGGTAAGTTCGTTGG	alt_6119_new	75	35	74	81	29	66	29	62	30	67
CACATCTCTTTGTTAT	alt_6119_new	36	12	51	59	9	41	8	51	11	40
GTTCCCGCGACTTTAG	alt_6119_new	44	28	69	63	19	54	30	50	29	42
GTCATCTGATAAGGTC	alt_6119_new	84	24	99	76	17	87	30	73	33	51
GGCTTCGGATTCAGAC	alt_6119_new	224	48	247	181	51	202	57	210	57	174
AGATTCCAACGGGGGA	alt_6119_new	284	68	299	287	65	251	43	287	70	225
CTTTTATAATTACCAT	alt_6119_new	9	5	20	21	4	14	5	11	2	10
CAACACGCAGTGGGAT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GCCACTAAGATGTATG	alt_6119_new	38	10	49	52	14	33	16	36	12	47
TCAAATTTTCATCTCT	alt_6119_new	21	3	33	31	1	21	4	17	1	17
CTGATTTGCCGATGTG	alt_6119_new	85	22	113	103	35	92	38	71	26	55
CGATAGACGGTCCACC	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TCTAATATGTATTTGG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GGCAAATTGGTGTTCC	alt_6119_new	142	39	171	133	49	124	36	150	44	124
TCGGCAGATTATCATC	alt_6119_new	851	219	945	881	222	795	259	725	231	676
CCGCGTCCGATCCTGC	alt_6119_new	159	57	173	186	44	173	56	166	41	121
ACAAGAGTTAAACTTA	alt_6119_new	57	11	54	41	15	36	13	53	8	40
GACTTCTCTTAGAGCC	alt_6119_new	110	35	165	166	42	126	42	117	68	104
TCTTCCTGAGGTATAA	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GATCTCTGCTGAGAAA	alt_6119_new	124	28	158	143	44	134	47	138	33	113
AGGCATGTGTGTAAAA	alt_6119_new	34	10	34	22	9	41	13	24	6	25
ACACTTTCACTGTAGG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TCCCGGGTCAAGCAAA	alt_6119_new	54	10	52	45	3	43	16	43	10	33
CAGGGTCGTCATAAGA	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TTGCACACATCTCCGT	alt_6119_new	323	96	369	288	109	291	140	248	125	233
ATGCTGTTTGACGGGT	alt_6119_new	249	58	334	284	86	215	80	292	63	232
GTGTCAGAGATTTTTT	alt_6119_new	59	21	109	75	24	83	11	74	18	67
CGAAAGGAATTTCTTG	alt_6119_new	49	16	67	60	9	53	15	51	12	55
TGAGGCATCTTACTTT	alt_6119_new	163	30	184	170	34	143	35	152	42	130
GTTACCCCCCGTAGTT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CCATTTTGGTCCATAT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CGGACACTGTATTTTT	alt_6119_new	100	25	129	99	28	83	23	89	45	87
CTTTCTTAGGGCGCTC	alt_6119_new	206	29	261	201	32	190	38	185	46	154
AGATTCTGTCGAACAC	alt_6119_new	42	13	55	36	12	37	3	34	13	32
TAAACAGATATTATAG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GGATAATCACCTGTAA	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GAGGCCCAACCTTTAC	alt_6119_new	562	121	723	713	131	526	140	563	158	470
TATCGCTATTGTAAGG	alt_6119_new	38	10	35	38	9	33	3	29	10	30
AATAGGCTAGACGGTT	alt_6119_new	63	20	87	84	20	63	24	44	25	58
CAGAAATTAACGGGCC	alt_6119_new	57	14	76	54	13	50	16	70	12	50
AAAATGCAGAACTTCG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
GCCACAAAGACTTGCG	alt_6119_new	106	25	105	112	24	85	31	83	27	87
ATGTCATGTCAATATG	alt_6119_new	319	118	355	375	85	299	117	285	128	261
GCATACACACTACTGT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TAGACCTCCTACCTTG	alt_6119_new	101	19	103	118	32	69	23	80	24	85
GATTTTGGCTTGTTGG	alt_6119_new	137	36	202	156	45	120	50	137	46	144
TCGCCGATAGTTGCCT	alt_6119_new	0	1	1	0	2	4	0	1	2	3
GTCATCCGCTGGTATT	alt_6119_new	14	3	25	27	3	11	6	34	8	15
AATTAATATCGCGAAC	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CAAAGTATCTTTGGGT	alt_6119_new	64	21	84	86	21	72	16	68	21	66
CTTTAAATGACCCTCT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TCCATGTATGCAGCTA	alt_6119_new	88	24	91	80	21	74	38	66	26	74
TCAAATCGTTGAATGA	alt_6119_new	403	168	514	469	133	372	134	451	137	339
GCCGTAGGAGCTTTCG	alt_6119_new	100	25	101	60	20	79	19	68	22	63
AGAGAGGAGTCCACCG	alt_6119_new	194	42	242	236	43	178	56	184	43	162
CGTAAATTAGGTGTAG	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TTTTATGCGGGGGTTA	alt_6119_new	95	40	139	109	25	116	28	109	27	98
GGTTTAGAGCGTCGGT	alt_6119_new	0	0	0	0	0	0	0	0	0	0
TTTGTGCCGGAGAAAA	alt_6119_new	0	0	0	0	0	0	0	0	0	0
CCGTCTCATCCTCATC	alt_2515_upstream	11	18	21	12	20	17	23	15	18	10
AGTCTCGACCCTGGGT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CCTCATGATCCGTGTA	alt_2515_upstream	17	26	22	20	21	15	19	20	23	18
CCTGACGGTGCATTCC	alt_2515_upstream	153	122	145	133	148	139	112	125	141	95
TGAGTTCACATGGCTT	alt_2515_upstream	24	28	42	37	28	27	24	21	28	32
GAAGCTAGTGATTGTC	alt_2515_upstream	95	94	99	89	85	62	86	63	98	66
TTGAGTGAAACGCTTG	alt_2515_upstream	196	243	252	210	187	189	206	201	237	189
CTCCATAGCGGGAGGG	alt_2515_upstream	50	50	68	48	59	53	48	53	45	57
CAGCCATATCCATTCC	alt_2515_upstream	3	2	8	9	4	1	3	1	3	1
AGCTCGTGCTGGTAGG	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTTGAACACGGTT	alt_2515_upstream	13	14	12	9	11	10	22	4	18	8
TCGTTAATTCCATCTT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GACACTTTTCGAGCGA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
AACCGCTTGTAACCTT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GGATCTTGCTCGAACA	alt_2515_upstream	2	1	5	8	5	5	5	8	5	4
GAAGTACAACGCAGAG	alt_2515_upstream	154	147	198	171	149	141	161	149	176	133
TGGCGCGCAAATGGCG	alt_2515_upstream	8	9	8	9	3	2	5	4	8	5
ATAGCTGAGCCGTGTC	alt_2515_upstream	25	21	25	24	21	20	23	20	21	19
GAATAGCCGTTCACGT	alt_2515_upstream	44	44	54	47	60	37	53	41	42	35
CGGCAACACCCCTATT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCTGATCCATGTC	alt_2515_upstream	21	48	30	26	47	24	63	20	60	22
GTTCCGACGACTCCCT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCGGTAGGTACGT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CACGGGTGGGTCTTTA	alt_2515_upstream	10	17	11	14	6	13	13	13	22	15
TCACCCCAATGTCGGC	alt_2515_upstream	68	70	108	79	58	79	90	73	77	100
CTTTTACCCCCTGCAA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTGGACCTGCGGT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GACCTCGTGGTTAGAT	alt_2515_upstream	68	74	79	69	71	50	73	57	78	70
CGGAATGCCTAATAGT	alt_2515_upstream	19	19	14	10	10	15	18	25	9	16
GCGCCGGAACACATAG	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCCTTTTTCCCCG	alt_2515_upstream	32	65	47	40	54	45	46	31	38	33
TTCTCGGATATTCAGT	alt_2515_upstream	27	38	53	40	30	22	31	36	30	24
TGTCTCGAAAATGTTT	alt_2515_upstream	75	43	88	70	47	56	56	48	64	70
CCATACTGTGCGTCTT	alt_2515_upstream	23	31	24	24	15	27	21	25	20	25
GCAGTCTGTACCTAGA	alt_2515_upstream	2	5	0	5	0	1	2	0	3	6
GAGCCATCTGGTACAA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCATCAAGCCACA	alt_2515_upstream	81	78	103	87	113	72	92	68	95	74
TATGTGAAAACACGCG	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTTTTCGCATGTT	alt_2515_upstream	34	45	47	29	33	31	47	46	38	44
TGCATCAGCCCGCCCA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTGGACTATGTTT	alt_2515_upstream	84	78	94	87	69	79	104	88	106	63
ATGACTAGGCGATGTA	alt_2515_upstream	6	5	6	7	3	8	2	1	6	4
CGTTAGGAAGGACATA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GGTGAACAACTATCAA	alt_2515_upstream	21	32	29	23	26	20	32	21	29	33
GAGCTGCGGCATTGCC	alt_2515_upstream	26	17	40	33	23	17	25	21	20	31
TATGTTAGTAAGCTAC	alt_2515_upstream	40	46	33	24	41	35	25	36	43	24
TATAAGTTTATCCGAA	alt_2515_upstream	11	16	14	5	11	15	12	6	17	3
GACTGTGCGGTCGCAG	alt_2515_upstream	28	25	37	47	54	40	33	33	42	22
ATTGAGCACGACTGCT	alt_2515_upstream	46	35	52	35	28	53	43	31	43	37
ACAACCACGGCTTGTG	alt_2515_upstream	23	21	17	15	28	12	22	9	20	17
CTTGAATATCTAAAGC	alt_2515_upstream	5	5	3	7	4	7	9	8	4	9
ATGACGCTCGCCCTTG	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TACGGTGGACCGCCGC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CATGCACTTCGTCCGT	alt_2515_upstream	20	19	38	34	21	16	20	34	25	30
TCGATCGGGATTGCAC	alt_2515_upstream	4	8	13	7	9	4	11	11	10	7
AAAGTTGATTTTCAGT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCACTTCGAGTAA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGGAAGTGAATTT	alt_2515_upstream	132	137	174	121	135	119	129	124	149	115
TGTAGAGTTTATGCTC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GCTATAAGGATAGCTC	alt_2515_upstream	41	38	56	36	51	47	52	41	32	31
CGTGCTGTTAGTGGTT	alt_2515_upstream	205	248	273	264	260	257	259	245	264	220
TACTCCAACGATAAGC	alt_2515_upstream	62	48	77	46	67	56	80	56	60	61
TACACGCGGGATTTGG	alt_2515_upstream	41	42	48	36	50	40	49	29	39	30
CTGTTTCAAATAAGTA	alt_2515_upstream	18	29	42	27	21	23	37	18	34	24
GAAATGCGGTCATAGC	alt_2515_upstream	8	9	5	7	8	4	5	2	6	4
GTCAGAGTCGGGTGTG	alt_2515_upstream	12	13	6	18	15	7	10	10	15	11
CTATCATATCTTGCCT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GGCGACATTAGAGGCA	alt_2515_upstream	19	12	29	26	33	27	20	16	25	34
GTTGGCGCTTAACACC	alt_2515_upstream	14	14	19	19	16	23	17	14	19	19
TCATTCAACTTGCCCA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TGTTATAGTTTGGTAG	alt_2515_upstream	14	8	9	17	20	5	2	16	13	6
AGCATTCGCACCCTAC	alt_2515_upstream	32	21	34	38	16	22	23	19	26	24
GTTTAAAAAGGGTGTC	alt_2515_upstream	25	12	24	13	16	21	22	8	21	16
AGATATCACCACTTGG	alt_2515_upstream	71	81	101	67	77	70	79	71	57	63
CGTTAATATCGGAATT	alt_2515_upstream	59	65	56	49	55	48	67	65	68	40
AGTTATTACCGAAATC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTAGATGAAAAAC	alt_2515_upstream	55	29	51	37	31	40	34	37	53	48
ATCCATACGGATATGC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GCTATAGCTCAGCCGG	alt_2515_upstream	16	36	39	29	21	18	27	19	16	17
GGGCCGTTGATTACTA	alt_2515_upstream	23	19	22	19	14	17	17	15	19	19
AATATTCTAGTACTGA	alt_2515_upstream	17	20	18	14	21	13	16	20	23	15
TTCGACACCGGGTTGA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CAAAACGTCCGGCGCC	alt_2515_upstream	34	29	45	47	29	29	38	35	42	44
TCCTGAGTATTTCCAA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTATTTCGGCAAT	alt_2515_upstream	100	103	134	114	112	108	111	111	97	98
GCGACCAATGCTACCT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
AGCTTGGTACATCATG	alt_2515_upstream	29	40	56	43	38	39	44	31	48	34
ATGCCCCAAGTCATAA	alt_2515_upstream	27	17	24	23	22	14	23	22	24	19
TCTATTTCATGGGGCT	alt_2515_upstream	30	52	42	44	51	30	39	44	39	34
TACAGACTTATTGGTC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CATTCTGACTTCGATG	alt_2515_upstream	23	20	28	14	22	14	27	14	28	20
CTAAAATCTCTTCAGC	alt_2515_upstream	404	407	455	408	384	388	449	352	439	318
TAATGCGTAGACGTAC	alt_2515_upstream	38	64	62	60	51	51	75	43	73	46
GAAAGGTTCCCTTCTG	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGGCAGATACTTT	alt_2515_upstream	25	18	35	21	33	21	15	28	26	35
TTGGGATTACCAGCCC	alt_2515_upstream	15	6	16	20	9	10	15	8	8	14
TGGTACATGGTGATTT	alt_2515_upstream	16	21	13	16	14	16	23	15	12	20
CGTGAGAGCACTCATT	alt_2515_upstream	29	20	37	23	27	19	23	27	19	17
TGTTACCCTTGTACCA	alt_2515_upstream	47	45	62	56	43	41	71	54	40	49
TTCGGATCCGTTTTAC	alt_2515_upstream	41	24	54	34	34	39	38	30	29	27
CTCGCGGCATTTTGAC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTCGGTTCGTATG	alt_2515_upstream	32	29	33	36	38	43	36	39	39	36
TAGGCAATGTCACCGC	alt_2515_upstream	5	9	10	5	3	9	5	8	5	12
GTTTGCCCAGCAAAAT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
AACGGCGCTTGGAAAA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGCCCTTCGCTAC	alt_2515_upstream	4	14	7	13	16	5	11	7	5	5
TCTATGTTGTTCTTTC	alt_2515_upstream	22	24	36	23	18	30	24	21	16	23
CCCAACTATCCACAAA	alt_2515_upstream	35	50	32	39	55	32	60	33	55	23
GCGGTTCTGGGTCGCT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGATAAAGATTAG	alt_2515_upstream	154	120	159	130	104	122	101	137	123	120
TATCGCAGTATACACA	alt_2515_upstream	44	35	42	31	25	33	25	31	35	22
GGTTATTGCGGATTAA	alt_2515_upstream	5	5	8	6	4	2	3	2	6	7
TTTTGCTTAGAGACAC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GTACCGTTGAGCCTGG	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
ACAAGGCTTTTAGTAC	alt_2515_upstream	47	38	54	40	39	37	48	53	34	30
CGTGATTCACTTTAGG	alt_2515_upstream	67	47	56	61	44	39	59	50	45	36
ATCTAGTTCATGAACA	alt_2515_upstream	51	53	54	45	35	34	37	46	50	40
CCTTCTCCATTCGTGA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CCGATTCAGGGGTTAT	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTATATGTGAGGA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTAATGAAATCCTGGA	alt_2515_upstream	20	22	28	23	19	18	8	19	17	15
TACCACGCCTTTCTGC	alt_2515_upstream	10	17	10	16	20	15	10	18	13	9
AATACTTGCTTCTCGC	alt_2515_upstream	101	93	111	102	85	90	97	110	86	97
AGTTTTCGACACCCCA	alt_2515_upstream	10	12	14	8	10	8	9	15	4	10
TCCATTCCACCCACGA	alt_2515_upstream	13	7	16	4	19	8	5	8	11	15
TTCCGCTTCGACTAAG	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CACAGCCAACGACTAC	alt_2515_upstream	28	50	38	23	54	36	41	26	38	30
GAGGTGTCGGTTCAGC	alt_2515_upstream	2	0	2	3	3	1	1	4	3	1
TGGATTAGGACATATC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTTGTCATACAAA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TTATCTTTACTGGATG	alt_2515_upstream	47	36	44	37	32	42	29	34	45	43
ACTTCATATGTTATAA	alt_2515_upstream	9	19	22	16	20	15	14	9	16	16
GGTTTTCCTCATTAGC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTATTCGTTTTTC	alt_2515_upstream	31	31	67	43	32	39	32	46	41	31
TGCCTGACGTGAAACC	alt_2515_upstream	17	42	27	12	31	15	29	29	32	19
TTTAACCGACCAGTTC	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
CCCGCTTGAATGAGCT	alt_2515_upstream	27	29	41	32	44	27	45	20	33	22
GTTTAATCCGTTTTTT	alt_2515_upstream	3	2	4	6	2	6	3	7	6	6
ACGGTTATGAAGAATC	alt_2515_upstream	10	9	10	6	8	11	14	8	19	12
GTCCCCTGGACATTAA	alt_2515_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGACGCCCCTACT	alt_5376_missing	20	51	36	26	43	25	48	35	59	30
TATGCTTGCCATTGAC	alt_5376_missing	59	101	63	70	90	57	108	44	84	61
ATATCATTATGCGTCC	alt_5376_missing	4	6	5	2	8	3	4	2	5	1
CTCGGATTCTTGTTTG	alt_5376_missing	24	39	29	33	43	22	42	24	29	22
TGAATTTTGAGGTCCA	alt_5376_missing	12	17	13	20	16	14	22	11	28	11
TCGCTCGGCTAAATGA	alt_5376_missing	14	53	27	32	32	18	41	22	42	21
AGCCCTTCATCGCGAA	alt_5376_missing	30	37	30	29	39	21	54	26	51	16
GCTAAGCGCGGGTAAG	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
TTCGCTGATGTCTCAT	alt_5376_missing	10	10	12	17	11	4	10	4	16	8
TAACCTGTGAGGTTGC	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
CTCAGGCATCGTCGGT	alt_5376_missing	43	61	46	39	54	57	65	54	55	44
GATAGTACCGTTTCAT	alt_5376_missing	13	16	21	12	22	18	17	13	35	19
GAGTAAAGGGATCCAA	alt_5376_missing	20	29	38	27	31	44	33	26	51	25
CGTTCTACGTTTGCCA	alt_5376_missing	2	4	4	2	5	3	1	3	3	1
GATGTCGGTTATACGG	alt_5376_missing	75	74	76	46	73	52	80	39	69	43
ACGAATGATTACACAT	alt_5376_missing	18	32	10	13	19	17	26	17	44	16
CTTTCTCATTCTCGTT	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
TATATTTTTAAACCAT	alt_5376_missing	12	15	17	15	28	14	20	12	16	11
ATTGCCAACGTTCAAA	alt_5376_missing	2	1	0	1	1	0	1	1	0	0
CTACACGGACTGCTAA	alt_5376_missing	0	0	0	0	0	0	1	0	0	0
CAAATTTAACGACTAT	alt_5376_missing	6	14	15	13	9	10	11	13	9	13
TCGGTTATTTACATCC	alt_5376_missing	86	75	111	63	86	71	59	61	90	57
CCTGATGCTAGGGCTA	alt_5376_missing	23	26	14	16	22	17	19	8	20	9
ATTCCTGGCGCCATTT	alt_5376_missing	38	20	38	46	21	38	24	38	28	46
TAGATGTTTGTTATTT	alt_5376_missing	5	12	5	4	3	6	4	4	13	2
GCACGGTCAATGGGTG	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
AGAATTTTTTTGTGAT	alt_5376_missing	40	68	58	51	81	45	78	45	94	46
ACAGCACCGGGGAGGT	alt_5376_missing	47	58	57	53	69	54	56	52	55	46
GATCGGATGTACGCTT	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
CTCTCATCCGCATCAC	alt_5376_missing	99	135	107	103	141	75	132	92	129	95
CAACTTATCGGGATGC	alt_5376_missing	5	6	8	6	5	1	7	3	7	11
CCGTGACGTGTACCCT	alt_5376_missing	33	57	44	34	69	41	73	22	73	39
CGTACCAACGCATCTA	alt_5376_missing	16	32	23	19	31	28	24	13	29	20
GTTCGTTTGTTTTTTA	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
ACGAATTTGAAGGTAC	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
TTTACACGCGTCCTCT	alt_5376_missing	7	6	7	6	5	7	3	3	3	3
TCGAGAGTACCGCTGC	alt_5376_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTGTCTGCATAC	alt_5376_missing	23	27	19	17	21	23	28	13	34	19
CTTTGGTTTTATAGCT	alt_5376_missing	12	20	11	13	18	14	11	6	20	7
TTATCGTGGATCCATA	alt_5376_missing	21	24	18	22	20	13	30	12	29	18
GGTTAAGGTTTTGACA	ref_3933_fdr	216	65	269	190	76	202	77	180	85	219
GCTCCCATTTTCAGCA	ref_3933_fdr	48	20	55	34	21	43	22	47	27	55
CAGAAGTTACCACGCC	ref_3933_fdr	95	49	123	71	36	82	32	61	51	80
TGGTGATACACTGATT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGTTAGTTACGCT	ref_3933_fdr	38	17	48	32	15	31	27	42	24	43
TGAGGCCCTGTGACTT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
ATCCTGTGTAACATTA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CCCATTAAAATGAGGG	ref_3933_fdr	175	226	207	186	254	136	256	167	245	158
ACATTTAGTCACAATA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGTGAGCAGCAGT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
AACTGAGTGGTATTAC	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
AATAAAAAGAGGGTAC	ref_3933_fdr	12	20	15	15	19	11	25	9	22	6
CCGCCCTTAGCTTACA	ref_3933_fdr	201	81	273	162	93	148	92	168	88	175
CAACTGTTACCCATGA	ref_3933_fdr	5	2	14	6	3	8	4	8	1	4
TTCGTTAATCCCGTCG	ref_3933_fdr	101	31	108	56	35	81	37	71	41	87
AGTCTGGAGGGGGGAA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CAATTTCAGCATAATA	ref_3933_fdr	20	15	17	22	25	23	11	29	18	23
TCTACCCCTTTGATTC	ref_3933_fdr	132	59	137	106	80	139	72	120	65	107
ACCTAAGTTTCAAAGG	ref_3933_fdr	227	103	240	174	141	208	119	171	136	197
GTAAATTTAAGTAGGT	ref_3933_fdr	43	20	43	28	10	36	24	15	24	32
GTAATGTGTTGCCTTT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CAATTCTTATCGGATT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CAATTTTAGTGCATTT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTCACACTGTAGC	ref_3933_fdr	29	23	29	21	12	20	11	15	16	19
TTTGCCGGATGAATCC	ref_3933_fdr	61	23	63	52	22	51	35	37	20	42
AAACAAGAGTCTTGCA	ref_3933_fdr	16	21	22	17	14	22	31	14	27	23
TACCGAGGTAACGTAC	ref_3933_fdr	159	68	198	130	83	150	88	148	90	161
ATAAGATTACGCCGTT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
TAAAAAGTTAGGGGCC	ref_3933_fdr	49	61	70	49	54	58	75	41	78	44
TGGTTATATGAGATCG	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
AATATTTACTCTATCA	ref_3933_fdr	141	55	170	105	75	122	60	107	77	90
TCCTTTAAGTGATTGG	ref_3933_fdr	22	5	19	15	8	30	6	11	8	19
GTAATACCGTCTTTTT	ref_3933_fdr	37	17	66	30	15	37	18	50	18	42
TTGGCGGCAAAGCCCC	ref_3933_fdr	96	31	101	63	22	71	24	58	37	72
CTTTCACTGTATTCCT	ref_3933_fdr	72	38	81	81	34	61	48	75	56	71
GCCAACGTCATTGGCT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CTATTTTTACTTATAT	ref_3933_fdr	33	10	25	15	10	14	18	7	16	24
GTGTGAGCCTATAGCT	ref_3933_fdr	183	56	182	136	77	142	58	140	78	158
TGGTCACAAGCCGCGT	ref_3933_fdr	106	41	115	80	50	102	56	88	54	103
TTTCGCTCGCGGCTAA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GCTCCTCAGAGGCTGT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
ATATGTGCAAGGCTTT	ref_3933_fdr	48	12	64	33	16	48	12	56	20	43
CGCGGTATCTTTAGTG	ref_3933_fdr	150	46	153	111	45	139	45	112	51	111
TTGGGACACCAGAGCG	ref_3933_fdr	235	87	273	175	78	236	85	214	77	231
CACATCTTGAGTACTG	ref_3933_fdr	2	1	9	2	1	2	0	1	1	1
CGTGGCGAGCCAGAGT	ref_3933_fdr	503	165	634	406	188	476	181	497	203	497
AGCGTTTCTGGGGCAG	ref_3933_fdr	29	11	35	25	8	23	16	23	17	37
CGTCCCGCAGGCGCTG	ref_3933_fdr	112	38	103	80	30	80	44	105	37	91
TTCCCTGTGTCCGTGG	ref_3933_fdr	36	13	40	30	17	30	22	22	21	30
TAAAGACAGACAGTCC	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGGTTGAGAGTTG	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGAGCCACATACG	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GCGGTAACTTAATTAT	ref_3933_fdr	309	126	322	203	123	266	112	242	130	252
TATCTCCTATTTCATC	ref_3933_fdr	31	33	38	41	16	47	22	38	33	52
AATCCATTTCGTCTAT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
TCCTCAGGGCAGCGCG	ref_3933_fdr	31	21	42	27	24	48	13	32	15	15
TACCACGTCCTTTGCA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCTCCGCTCTCAT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGGTCTTTGAATA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGCGTTCGCTGAG	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
TGCGTGGTGAGTGTCT	ref_3933_fdr	56	23	47	41	16	42	26	27	28	42
TGGGCTCTCTCATTAT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCATTGGTACTGT	ref_3933_fdr	72	27	83	51	44	78	39	79	52	65
TATGGTTTCAGTACCT	ref_3933_fdr	146	62	160	102	56	164	59	117	71	138
TTGTGCACCGTTTTGT	ref_3933_fdr	531	161	572	378	213	448	223	385	178	408
TCCTCGATTTTCTTTA	ref_3933_fdr	181	71	215	137	85	147	86	138	70	141
ACACATTATTCCTCTC	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGCCACCAGGGGC	ref_3933_fdr	55	12	64	41	13	43	46	46	24	48
TGTCTGGTTTCAAGTT	ref_3933_fdr	20	6	27	9	5	15	5	24	7	17
TTTCTTATAGATTTGA	ref_3933_fdr	83	29	102	60	42	86	44	88	52	78
TGCGTTACGTTTGTTA	ref_3933_fdr	725	274	820	517	258	624	257	557	283	643
TTATCTTCCCGGTTTC	ref_3933_fdr	82	13	81	64	25	79	38	88	42	64
CTCTTGTGTAAGTGAT	ref_3933_fdr	59	31	84	37	19	54	24	42	24	47
GGAATCGTCGCGATTT	ref_3933_fdr	84	25	107	62	26	62	30	57	38	65
ACCCAATTGCATTTTG	ref_3933_fdr	210	82	228	130	87	159	83	159	93	191
TCTCTTGCGAAGGGCA	ref_3933_fdr	81	30	84	61	41	59	34	59	47	72
CTACTGGCATTGTTAT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CCTTACATCTCGTCCT	ref_3933_fdr	45	9	52	34	17	25	8	40	25	34
AGGCAAGCACTTTTCA	ref_3933_fdr	19	8	19	20	11	22	13	20	13	15
GATTATCTTCCGTGAA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTCAGATACCTCA	ref_3933_fdr	237	90	250	176	121	165	107	191	85	175
ATACTTGTTAAGATTA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CATCCATACTTGCACC	ref_3933_fdr	106	29	131	82	45	93	52	91	57	99
GCGTCTTGAGATGCGT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
TATCTAGGGTTAGCCA	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GCCCATTCTATTTGAG	ref_3933_fdr	180	68	188	136	81	142	67	135	92	128
TCGGAAACTCAGTTCT	ref_3933_fdr	40	13	58	37	14	42	24	39	8	40
ATTGTCTTGGATCGCT	ref_3933_fdr	19	8	30	19	6	19	3	19	2	21
TTTCAGGTAGCAAGAT	ref_3933_fdr	119	48	129	102	52	109	45	79	54	104
GCGTCCCCTTAGCGGT	ref_3933_fdr	30	7	25	20	20	25	6	21	26	18
AATAATTGTAGCCTGG	ref_3933_fdr	101	48	116	87	54	113	65	82	48	104
CTGTTCGACAGGGTAC	ref_3933_fdr	14	11	26	7	6	11	8	14	6	17
GGTTCTGTTGACGACG	ref_3933_fdr	110	29	131	95	41	97	28	118	38	105
AAACTATTTAATGGCA	ref_3933_fdr	77	24	93	46	24	94	35	69	30	87
TGGAATCCGTGTGACT	ref_3933_fdr	84	38	115	69	20	86	25	79	31	91
ATTTCTCATCATCAGA	ref_3933_fdr	371	147	427	278	123	337	141	320	135	296
TCGCGAAATTGAGCAT	ref_3933_fdr	121	45	132	82	38	111	56	93	36	108
TGGGTCGCCAGTATCT	ref_3933_fdr	45	27	33	22	16	34	27	31	22	39
GCCATCTCTTGAGTGT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
TTGATCGGGCGCGCCA	ref_3933_fdr	413	125	487	314	118	413	133	361	150	334
GGGGCAACCGTACGAA	ref_3933_fdr	95	34	131	71	40	110	50	121	35	99
GACTGAGTGCATGTAA	ref_3933_fdr	348	116	368	234	131	288	132	285	122	276
TCTCCCTGTTTACCGT	ref_3933_fdr	40	19	41	18	9	31	16	29	27	25
CTGGGTCAACAGGGTG	ref_3933_fdr	15	3	11	3	5	4	6	14	4	13
GTTGGAAAGCTAGTTG	ref_3933_fdr	143	65	179	103	69	139	63	111	65	145
AGCCTCTGATAATCGT	ref_3933_fdr	166	56	182	108	49	117	75	118	54	139
GAATGGTAGTTGTTTC	ref_3933_fdr	474	204	573	361	164	482	194	452	174	438
TAGGTGGTACCCCTGG	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
GGCGATATGGCTGTAG	ref_3933_fdr	222	83	265	197	50	213	81	160	92	209
CACCGGCCGGTCAATA	ref_3933_fdr	68	71	99	71	91	58	84	70	86	66
TCGCTAAAACATCGTG	ref_3933_fdr	412	337	484	306	330	424	330	364	363	364
TGACTTCTTTATAATT	ref_3933_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACCGGTGTGTTG	ref_3933_fdr	92	47	83	69	53	73	45	52	55	68
ATTCGTATTTGACCTG	ref_3933_fdr	47	22	57	53	36	59	20	44	27	58
CCAGGGCACGTTCATT	ref_2078_RC	3	1	4	1	2	3	3	0	3	2
TATTTGCCTATCATTG	ref_2078_RC	76	96	92	113	91	71	121	77	100	99
GTTTAATCTCAATGTT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TAACTCGAGTCGCTCG	ref_2078_RC	14	8	13	28	9	12	12	17	21	6
CGACTCCTGTGTCATT	ref_2078_RC	48	57	42	44	59	37	66	34	61	35
CATTTCCTCTGTCAAC	ref_2078_RC	46	48	46	62	38	55	39	48	44	46
CTATAGAATACGCATG	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
GTACAGGCTGGCGCTC	ref_2078_RC	93	70	108	66	97	68	84	79	71	72
CGTATCGGGCTTTCGG	ref_2078_RC	15	18	26	23	18	15	22	13	19	20
GGATTGCAAGCTTGAA	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CAGAAGATTACACACA	ref_2078_RC	43	52	50	42	38	38	49	26	40	23
CTCATTTTGTATGTCA	ref_2078_RC	103	145	145	148	138	147	151	139	139	110
TATGGTTCTTTCAGTG	ref_2078_RC	8	14	22	14	13	15	12	8	22	12
CTTGCTTGATATTTTG	ref_2078_RC	6	7	6	14	5	8	7	8	5	4
AACGGTGCGTCGCCGG	ref_2078_RC	7	7	7	5	2	5	13	5	8	6
AGTGTTACCTTCGTCA	ref_2078_RC	171	162	213	149	158	138	139	156	149	147
CCCGGGCTTGCGCGTA	ref_2078_RC	120	80	135	116	104	98	102	100	90	86
CGTTGACTCCCTTTCA	ref_2078_RC	16	16	22	10	19	14	22	19	14	13
CGGCCCGAAGCTCTCG	ref_2078_RC	75	74	98	67	55	67	62	77	99	77
CCTATTAATGCCCTCT	ref_2078_RC	73	221	101	94	273	100	273	78	288	70
TTTGGCTCGTTGGTAT	ref_2078_RC	111	143	151	148	143	124	158	137	128	106
AACTACCAGTCCACTC	ref_2078_RC	43	52	59	48	69	43	53	45	67	38
GGCTTAGGGTGATCCG	ref_2078_RC	16	22	28	22	28	12	27	18	16	10
ATTTATCTCTCAGGCT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
AAAGTCCGTGCATCAT	ref_2078_RC	29	17	23	21	16	19	21	11	13	16
ACTAGCATGGATACGT	ref_2078_RC	24	25	30	29	35	25	31	20	29	7
TCGTTTCGGCGGTATG	ref_2078_RC	52	66	72	59	47	69	56	65	61	58
GTAGTACTCGATCTTT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
ACATTGCTCTCTGGGT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TTCACGACCTTTCTCA	ref_2078_RC	123	133	179	157	126	118	115	139	122	136
ATGGCACTGGAAGTTA	alt_2078_RC	203	90	256	237	67	214	80	212	61	154
GACACTGTGGAAGCAT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CACTCTTTACTGGTGA	ref_2078_RC	135	94	135	135	126	94	124	94	91	78
ATCTAGGGTCGGGCAA	ref_2078_RC	0	0	0	0	0	0	0	0	0	1
GCGAGGTGCGTATCTG	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
ATTGTAGGAGTTAAAG	ref_2078_RC	7	8	9	7	5	5	9	8	4	4
CAAGCTCCAGTCATCA	ref_2078_RC	37	32	37	36	40	36	34	20	33	23
GTTCTAGGTTGTCAAT	ref_2078_RC	91	134	132	117	130	111	136	91	157	98
TGTTTTGGGTCATTCG	ref_2078_RC	25	35	40	26	26	29	27	26	28	23
TAGGTTGATGTCTAAT	ref_2078_RC	15	12	16	18	19	20	19	14	15	13
GCGGTCTGGTCGTCCC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CTGGAGCGGACTTTCA	ref_2078_RC	27	23	36	44	29	40	38	38	22	18
CATGCGGCCTCCCGTA	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CCCTCAGCCCGTCTGA	ref_2078_RC	197	224	234	237	191	203	225	192	225	171
CCTGGCTCCTTATTAC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TGTATCAATCCTATTG	ref_2078_RC	15	16	25	19	15	16	8	15	12	8
CGCTACGTTCTGCACT	ref_2078_RC	65	59	86	68	61	43	68	61	68	57
TGGTGTAGTCGTATCC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CTGGGATAAACGTCAA	ref_2078_RC	23	22	22	10	17	13	20	10	21	8
AACACCGTACAGTTGA	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CATAGCGAATCGTTGT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
GAAGCGTATTCGTGCT	ref_2078_RC	27	20	34	39	22	27	25	44	16	22
GAGCCTAATAGTACGG	ref_2078_RC	26	48	44	35	40	37	24	36	25	27
ACTCTTAGCTCAGCAC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
AACACGTATTCGTGCG	ref_2078_RC	31	30	29	25	19	27	36	24	26	20
AAAACCAAGGGTTCGA	ref_2078_RC	30	20	30	18	10	21	17	19	12	17
GATTCTCTCGCTCCGG	ref_2078_RC	15	14	25	19	17	16	26	16	14	17
TGGTTGCATTAGCTCG	ref_2078_RC	10	15	22	18	8	15	14	23	10	19
TAGGGCTCGTCCATCC	ref_2078_RC	38	53	51	43	52	59	43	37	53	42
AACTCAATCATCATAG	ref_2078_RC	14	19	21	20	14	12	18	20	23	5
CCGATCGTCGTCCGTC	ref_2078_RC	19	25	34	19	34	19	33	20	27	18
GTAGTCAAGCGTCTCA	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TCAGATCAGTTGCTCA	ref_2078_RC	79	103	99	116	124	87	122	84	129	92
GTTTCCTGGTAGTGAT	ref_2078_RC	13	21	21	27	23	20	9	21	15	15
TTCCTGACATCCGTGC	ref_2078_RC	3	11	5	7	4	5	4	7	8	6
CTTAGCAATCGATCGG	ref_2078_RC	5	1	6	12	9	14	8	2	6	7
ATCGTAACGTTCGACA	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TTTGATCTTTCAGCCG	ref_2078_RC	28	19	22	22	17	25	23	29	26	34
GTGCCCGGAAATGAAA	alt_2078_RC	94	87	117	116	100	88	112	87	107	97
CCCCACACCAACTCTA	ref_2078_RC	78	114	119	117	93	94	126	100	126	118
GGTTCGTTGCCGTTTG	ref_2078_RC	13	15	21	13	8	19	11	15	7	24
GTAACAAGATGCCAGA	ref_2078_RC	33	20	42	37	35	25	18	43	27	25
GGGCTAATTTGTCTTG	ref_2078_RC	226	198	279	195	184	234	196	213	204	194
TTTCTTGCTCCTCTCA	ref_2078_RC	23	17	33	33	27	22	18	19	18	21
TCGAATTTCAGAGACG	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
GCCATCATGCGCGAAA	ref_2078_RC	23	11	24	24	22	19	20	33	24	24
TCCCGGCGGGCGCGTT	alt_2078_RC	28	23	35	36	30	32	29	34	26	41
CCAAGGACTATTTCTC	ref_2078_RC	50	62	53	50	89	49	107	53	105	44
TCCAATGCGGAGCGTC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TTATTCCGAGTTAGTT	alt_2078_RC	4	12	7	5	10	9	9	9	13	9
CCTTGTTAGTGTTATA	ref_2078_RC	50	65	63	64	70	58	77	56	80	58
CTCGACCAAGTTCCGT	ref_2078_RC	24	28	26	19	29	24	19	21	20	15
CCCACTCAGGAGGTTC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TTTTTCGCCGGCTCTT	ref_2078_RC	3	16	20	18	9	5	13	12	9	8
GTTCGCGGTAAAGTAA	ref_2078_RC	44	30	46	44	34	32	37	35	54	37
AATATCTTGAAAGCGC	ref_2078_RC	30	40	30	37	29	35	28	32	24	34
CACACATATGTTGTCC	alt_2078_RC	231	228	297	258	228	241	220	234	241	209
ACACCTTGGAGCTGCG	ref_2078_RC	55	37	69	52	45	53	57	55	61	47
CGCCCCGTCGTACCAT	ref_2078_RC	9	21	9	5	49	8	18	7	15	5
TAGTCGCTTAAGGATC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CATCCATTATGGAGAG	ref_2078_RC	3	8	10	8	2	5	3	4	4	7
GTGCCCTGTACGCCTC	ref_2078_RC	81	88	100	83	78	65	81	70	85	67
TAATCACGGGCCTACC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TGGAACACCCGGCCCT	ref_2078_RC	22	19	31	27	26	35	19	26	27	31
CGCAGCGGCTATTAGG	ref_2078_RC	5	8	9	8	10	4	10	3	14	4
ACTAGACAGGTCGTTT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
ACGCCTGTCGGTGTTC	ref_2078_RC	37	29	42	30	34	17	23	24	43	22
ATCCTGGGTCGTCCTA	ref_2078_RC	8	7	12	14	15	16	17	9	12	20
CGGCACCTTTTGGTTA	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CAGACATCTCTATTCT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CAAAGTAAGCAAAACG	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
CATGTGATTGCGAGGA	ref_2078_RC	80	70	96	61	71	55	59	63	78	58
CACAGAATCAGTGGCC	ref_2078_RC	22	24	24	22	19	22	24	27	19	18
CACCTGCATCCTTTGA	ref_2078_RC	58	71	75	96	74	79	72	80	72	61
CTTGGTGGGTAAGTTT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
GCTCGAACCCTTACGC	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
GGGGCGTAAGTCACGA	ref_2078_RC	79	76	112	91	97	78	75	80	102	87
GGAATGATGTGCTGAT	ref_2078_RC	57	44	77	61	43	60	60	62	53	55
CGAATTCCATGTTGTG	ref_2078_RC	50	51	68	68	40	51	57	40	46	64
GTCGCCCTCTTCTTGT	ref_2078_RC	4	6	7	3	6	5	3	8	4	5
TCGGTCGACCGATTTA	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
TAGCGCAGTCACCCGG	alt_2078_RC	35	14	61	48	23	55	11	43	23	47
TAACTCACTCTAAATG	ref_2078_RC	16	26	39	28	23	20	29	24	33	24
TTTTTGCCACTGCAGT	ref_2078_RC	25	28	26	22	32	16	23	17	22	18
CTAATAGCTTTCCAGA	ref_2078_RC	32	32	54	44	24	36	36	52	39	31
GTTCTTTACGGATGGA	ref_2078_RC	4	3	10	7	7	6	6	4	4	4
TCCGGGTATCTGTCTA	alt_2078_RC	129	62	175	170	71	143	79	151	48	126
TCTGTGACTGGTTCTT	ref_2078_RC	2	1	4	1	5	3	4	4	4	7
CTCTCGTAACTCGCAA	ref_2078_RC	55	49	65	54	64	40	51	47	38	43
ATGGCTTTTCCAACCG	ref_2078_RC	22	19	35	31	23	21	25	23	26	18
AAGAATCTGCAGGGTC	ref_2078_RC	8	3	6	6	2	4	3	4	11	5
ATAATTTATTTCAGCT	ref_2078_RC	0	0	0	0	0	0	0	0	0	0
GACGAACCGTAGGGAT	ref_2078_RC	54	48	58	64	36	37	44	44	43	46
AATGTCGCAAATTTAA	ref_2078_RC	51	34	51	48	37	54	51	60	35	47
TAATAAGCATTTATGT	ref_2078_RC	20	13	28	32	20	22	16	26	21	9
CTGCTAGTCAACATTG	ref_2078_RC	29	22	37	32	35	21	43	21	30	20
ACCATACTCGCTAGAA	ref_2078_RC	0	3	7	3	3	0	1	2	4	3
GGGTGTCTGTCGAGGT	ref_2078_RC	48	41	49	44	50	48	43	22	45	33
TAGTACCTTGCATATG	ref_2078_RC	32	25	38	37	25	35	24	26	38	29
TTCTAGGGTCGGGCAA	ref_2078_RC	85	76	100	100	70	74	79	95	54	75
ATAACACCGTACCCGT	ref_2078_RC	19	43	40	28	56	35	29	23	36	23
TCTATAGTTCTATCTG	alt_516_reverse	18	41	21	22	41	19	39	23	43	29
TTCACATATTAAACCC	alt_516_reverse	15	19	20	11	13	23	27	14	20	16
GATTAGTTCTCAAATG	alt_516_reverse	16	27	21	23	21	11	27	17	22	16
CCATCCCCACCATTTG	alt_516_reverse	3	10	7	7	9	9	7	6	19	6
TCTCGACGGATCTCTA	alt_516_reverse	15	13	7	6	8	7	10	12	9	11
CCTAAAAATGTGTCGT	alt_516_reverse	111	92	129	100	132	109	120	108	104	93
CATCTTTGAGTGTCTC	alt_516_reverse	30	49	47	36	58	42	40	34	36	22
TCCAGTAATCATGGGT	alt_516_reverse	35	39	28	42	35	29	40	23	43	29
CGTTGTGACTTTTCTG	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCCGCATACATTG	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCCCATTCCTAAA	alt_516_reverse	33	83	36	50	81	36	86	36	70	41
TTTACACCGGTATAAC	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
CTTAACCAGGATCGGG	alt_516_reverse	34	45	48	47	64	40	50	41	60	30
GCTTTTCCATTATGTC	alt_516_reverse	11	7	10	5	6	6	7	6	8	7
TCCTATCTCAAATGTC	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
TCAGAAGGCACATCAC	alt_516_reverse	12	16	17	13	18	11	13	15	12	16
TCTGCGCGCCGCATCG	alt_516_reverse	12	24	26	34	20	28	29	17	20	19
GGCGTGGCGGTTAGAA	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
GCAATGCCAAATCAAT	alt_516_reverse	36	45	48	42	53	39	43	40	43	28
ACGCTTACCCCGCACA	alt_516_reverse	27	49	29	48	53	31	45	32	57	31
CTTTAGTGGAAGCCGT	alt_516_reverse	51	51	52	43	69	36	66	48	60	39
GTAGCGGCCGGATATA	alt_516_reverse	45	48	54	29	45	38	59	27	39	32
TTACACATATTAAAAT	alt_516_reverse	1	1	4	2	2	2	0	1	2	2
GGTCTCCGGCCTGATT	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGCGTTCGGTTGT	alt_516_reverse	9	16	15	16	17	16	28	16	22	10
TAGCGGGACGTGGTCT	alt_516_reverse	39	56	58	61	57	42	67	54	64	47
TTATAGTTAAGTAAGT	alt_516_reverse	2	2	3	4	3	5	3	6	9	3
GTACATGTTTACCGCG	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
AGAGTGTTTATATAAT	alt_516_reverse	9	16	11	12	17	18	26	6	17	9
CGTGTGCTACTATGCC	alt_516_reverse	17	47	9	17	59	15	44	6	62	11
ACGATGGTGCGGACCG	alt_516_reverse	19	26	25	20	25	18	23	17	12	20
TAGGGCTACTGCATAG	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGGGTCGTTGTTC	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
CGTACGGTTGTGCGAG	alt_516_reverse	64	89	66	60	119	59	99	59	82	52
CCGTGGTGAAAACTTA	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
GCCAATTACAATCGAC	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
CGTGGCCTTTTATCTT	alt_516_reverse	10	13	5	9	14	7	15	6	18	7
CACTGGCCATACATTT	alt_516_reverse	10	20	9	5	21	7	26	8	27	11
TTATTAATGTCGCACC	alt_516_reverse	15	35	24	18	25	17	26	20	28	14
TTTCGGTTCGCATGTG	alt_516_reverse	0	3	0	2	1	1	3	1	2	0
TTGGAGTACGCTTAGG	alt_516_reverse	12	12	16	12	11	12	19	17	13	12
CAGGTATCGGCATCAT	alt_516_reverse	27	48	56	44	48	27	33	31	44	25
CCGTAATATCTAGTCT	alt_516_reverse	1	0	0	0	0	0	0	0	0	1
AACCCGTGCACCTATA	alt_516_reverse	7	6	18	3	6	5	7	3	4	5
GCTTTGTGGTGCGCTT	alt_516_reverse	18	7	9	15	11	8	19	14	13	12
AATCCCTCTGTTAGTC	alt_516_reverse	31	55	41	30	49	39	54	29	60	31
TAGAGTACCACCACGG	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
AAAGAGACTATCAGAG	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
CTGATTAGGTGAACCA	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
GTTGACCCCGCCGTCG	alt_516_reverse	10	11	13	13	28	9	18	10	15	10
AATTTATTTCCCTAAT	alt_516_reverse	0	0	0	0	0	0	0	0	0	0
TGGGCTATGACAAGTT	alt_516_reverse	23	32	37	17	46	21	26	35	32	18
TCGACCAAAACAGGCA	alt_516_reverse	36	43	37	39	43	27	37	28	43	34
GGTTGGTTTGGTATGT	alt_516_reverse	12	16	18	13	20	18	19	20	15	13
ATGTTTTGGAGGCAAG	alt_516_reverse	8	16	20	11	28	11	32	18	25	14
GCACCTTTAGAGACTT	alt_516_reverse	1	2	2	2	3	4	4	2	4	1
CCACTTTAGTTTTTGC	alt_5871_new	0	0	0	0	0	0	0	0	0	0
CCACTTATTCAACGCC	alt_5871_new	131	86	126	120	134	94	112	108	131	87
TAGGGCCCGCATTGGC	alt_5871_new	0	0	0	0	0	0	0	0	0	0
CTACGCAGCCTCTACA	alt_5871_new	0	0	0	0	0	0	0	0	0	0
TGGGCCCACCCTCAAT	alt_5871_new	82	69	101	70	71	75	78	96	96	76
TACCTCCTCGTCCTTA	alt_5871_new	0	0	0	0	0	0	0	0	0	0
AGATGTGCATGGTTTG	alt_5871_new	118	96	148	119	99	110	98	103	108	122
ACCACGGGAGACTTCT	alt_5871_new	37	22	58	58	29	70	28	43	34	40
TTTAACAGCATTAGGC	alt_5871_new	111	50	115	81	56	77	63	97	66	83
AAGGGTATCGGTCAAC	alt_5871_new	109	81	153	123	72	105	92	112	83	92
TGACCCGAGTGTGGAA	alt_5871_new	0	0	0	0	0	0	0	0	0	0
TCGGGTACTGGATTGT	alt_5871_new	70	65	71	80	50	67	65	77	65	65
GGAAACTCTTAACTTC	alt_5871_new	93	76	132	82	84	97	72	90	82	78
TCGGCGTCCTAGCATG	alt_5871_new	27	22	38	26	37	27	11	33	31	31
GTTACAGATGCCTATG	alt_5871_new	20	4	11	12	6	12	7	14	7	21
CTCGCGGTCATTTGCG	alt_5871_new	89	91	103	113	95	81	73	76	95	85
GTCCTGAGTTGTATAG	alt_5871_new	138	102	155	158	113	126	96	111	87	135
TGTGTTTAACTCCTCA	alt_5871_new	0	0	0	0	0	0	0	0	0	0
ATTCTACCCGCAGCAG	alt_5871_new	49	46	64	43	56	59	37	46	56	48
GGTCCTCGCTACCGCG	alt_5871_new	61	57	83	73	48	80	48	75	64	42
AACCCCTAGTCACAGA	alt_5871_new	0	0	0	0	0	0	0	0	0	0
ACTACCTACGGCGGTA	alt_5871_new	43	25	36	46	36	40	37	45	45	45
GTAGTATCAACGCAGG	alt_5871_new	150	115	217	142	124	146	109	167	106	136
CGTAACTCTTTGTAAT	alt_5871_new	8	9	10	5	19	7	5	6	7	5
TGTCTGGACGAGCACG	alt_5871_new	0	0	0	0	0	0	0	0	0	0
TCCGATTTGAGGGAGC	alt_5871_new	57	38	63	69	45	53	41	56	41	54
ATTCTGTAATCTGGAT	alt_5871_new	0	0	0	0	0	0	0	0	0	0
AGGAGCTTACGTCGGA	alt_5871_new	73	76	108	76	66	69	69	64	55	68
TTTGCTTCCCTCCCCA	alt_5871_new	12	7	13	11	6	7	3	13	6	10
GGTTTTTTCTGACTTA	alt_5871_new	63	27	79	51	35	71	40	63	46	67
ATTTATCGTGGTCTGT	alt_5871_new	43	43	55	46	26	40	31	43	38	34
GGAATAACTTGTTTAA	alt_5871_new	0	0	0	0	0	0	0	0	0	0
CTTCGTGCCCCAGTAT	alt_5871_new	25	23	56	51	34	57	29	33	35	43
TCACTTTTGAGAAGTT	alt_5871_new	29	18	31	22	17	36	19	28	12	25
GGCGTTGCCCAACCTC	alt_5871_new	57	29	64	56	24	52	31	48	42	57
CCCTTGTGCCTTCACT	alt_5871_new	1	17	0	2	18	3	16	9	17	4
GACTCGTAGGGCCAGG	alt_5871_new	19	12	17	15	5	15	9	16	11	18
TCCCGAGATTTCAGAG	alt_5871_new	2	6	5	4	0	1	3	2	5	5
ACGAGCTGGTCTTAAG	alt_5871_new	36	34	28	44	25	36	28	40	36	42
CGTGTCCGCTGTAGGC	alt_5871_new	21	14	28	18	18	23	12	21	33	20
AGGACTACTGAAGGTT	alt_5871_new	0	0	0	0	0	0	0	0	0	0
CTCTTACGATTCCACA	alt_5871_new	19	9	20	17	18	26	6	16	14	15
TAGGCCCCATATGCTT	alt_5871_new	0	0	0	0	0	0	0	0	0	0
AGTATTTAAGCCTCAT	alt_5871_new	24	31	48	38	24	32	23	34	33	25
TAGTTAGCAGCATCTC	alt_5871_new	0	0	0	0	0	0	0	0	0	0
TACGTTGCAGTTTGCG	alt_5871_new	25	29	43	26	29	29	17	28	39	31
ACGGCCATATAGGTCA	alt_5871_new	17	15	23	7	14	18	13	18	15	14
GAAATTCCGGGCCCAG	alt_5871_new	0	0	0	0	0	0	0	0	0	0
TGTTTGTGGGGACGGC	alt_5871_new	22	8	25	22	24	29	20	32	17	22
AGTTTTGACGTCTTTT	alt_5871_new	0	0	0	0	0	0	0	0	0	0
ATCGCTCTCCGGATCC	alt_5871_new	162	119	183	144	91	153	116	125	119	137
GTTATTCGGAGTATGG	alt_5871_new	46	31	55	58	31	44	38	35	53	45
CATAGCTCCTCCGAGG	alt_5871_new	6	10	11	10	9	7	7	7	7	5
TACATCATTTTGGAGC	alt_5871_new	5	5	8	10	6	7	11	3	9	8
TTGTCGCAAGTATTTC	alt_5871_new	49	45	62	48	48	59	49	53	45	51
GCTAACATATCCTTCC	alt_5871_new	0	0	0	0	0	0	0	0	0	0
TATAGGAAATCAGTAT	alt_5871_new	35	28	39	51	30	35	39	34	33	26
GAGCGCTACCTTGGGG	alt_5871_new	45	36	65	55	34	37	42	46	44	51
GCTCATAACGGAAGTC	alt_5871_new	35	41	52	43	35	34	28	37	39	30
GACTGGGTACTCCACA	alt_5871_new	14	4	11	13	4	8	6	3	4	10
TTCAACCGTAATGAGT	alt_5871_new	50	55	61	27	56	52	49	37	56	43
AGTGCACTCTGGCATG	alt_5871_new	143	128	159	153	122	123	112	148	108	126
AATACTTCTAGAACAG	alt_5871_new	0	0	0	0	0	0	0	0	0	0
ATACTTTTTACGAAGT	alt_5871_new	33	13	25	16	20	27	12	25	20	27
CGGCTGCCGCGACCTT	alt_5871_new	0	0	0	0	0	0	0	0	0	0
GGCGGCCTTCGCCAAT	alt_5871_new	0	0	0	0	0	0	0	0	0	0
ATATCCTCCAGTTTTT	alt_5871_new	40	26	39	40	27	23	25	43	25	41
GTCACTTATCTCTCAT	alt_5871_new	61	20	43	45	20	25	26	25	23	24
ATCCATTCGTGAGATC	alt_5871_new	7	5	18	14	6	5	10	9	7	10
ACTTTTAAGCTTCCGT	alt_5871_new	10	3	11	8	2	6	3	7	2	8
CTTCGCCCCAATGATC	alt_5871_new	15	14	22	19	8	13	7	13	10	15
GATGAGTTACCGCCGA	alt_5871_new	31	28	36	31	26	34	29	40	23	31
TTCTGTATTTTCAGTC	alt_6053_new	11	14	10	15	17	11	23	12	8	5
TGCTTTGTGCTGTCTA	alt_6053_new	0	0	0	0	0	0	0	0	0	0
CAACTGTAACCTATTA	alt_6053_new	9	16	13	6	9	8	15	10	19	10
TATCGTGTACGGCGCT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GGCTTCCCCTAGGTTT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
TCTGCACATTTACGTT	alt_6053_new	25	60	22	26	54	12	42	21	64	25
CCATACTGTAAATCCT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
CGTTCCCCGTTTGGTC	alt_6053_new	0	0	0	0	0	0	0	0	0	0
CCACGTCTCGGAACTA	alt_6053_new	10	18	9	9	26	7	23	10	18	5
TCAGTGAGCTCTCTCG	alt_6053_new	2	2	0	2	2	0	3	2	1	1
AGGTCTGATCTTGTTT	alt_6053_new	19	27	19	13	25	9	38	23	29	17
CCATAGGCACCCGAGG	alt_6053_new	3	8	7	6	12	6	8	5	8	9
GCACGTCTACAAGCGA	alt_6053_new	32	83	43	44	89	34	76	28	76	37
TCCCAGGCTACTGGTT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
AGGTTTTCGCTTGTAC	alt_6053_new	1	8	4	2	7	0	7	6	7	3
TTTCAGGCTTTGCCCG	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GCCCTTGAGAGTTTTA	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GTAGTACCTGCGAAGT	alt_6053_new	7	12	7	9	16	7	14	8	23	8
TTGCGTTATGTTGCCA	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GGAAGCACCTTTGCGG	alt_6053_new	32	48	36	31	50	36	66	26	65	27
CTTTGGTGCACGTCGT	alt_6053_new	9	8	7	4	15	5	13	7	5	4
TTAGATCTACCACCCC	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GGCGCCCTCAATAATC	alt_6053_new	50	73	75	60	73	40	73	47	92	60
ATCACCTTCTTGATCT	alt_6053_new	28	56	36	35	54	20	51	36	71	20
ACACACTGAGTGTGCA	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GGACACTTTACAGGCA	alt_6053_new	8	6	6	4	6	5	6	5	11	4
TGTTGTTTTATTGAGT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
CCACTAGACTCGAACC	alt_6053_new	4	11	14	2	17	5	13	8	13	3
CTGTTGTGTTCTACGG	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GTGAGATCTCGTCTGT	alt_6053_new	6	24	11	11	11	15	17	7	24	6
GGAACACTGATTCGGT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
ATCAATATGTTTCTAG	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GCCTGCATGTAGCGGC	alt_6053_new	18	42	10	10	18	6	26	13	28	4
GCCAATAGTGTCTGCA	alt_6053_new	0	0	0	0	0	0	0	0	0	0
CGTTTAAGGCTTGGTA	alt_6053_new	0	0	0	0	0	0	0	0	0	0
TGCTCCTGCATTGCTG	alt_6053_new	0	0	0	0	0	0	0	0	0	0
TCGGTGCAGTTGGCTC	alt_6053_new	0	0	0	0	0	0	0	0	0	0
GTAAAAACGTGTTAGT	alt_6053_new	22	44	28	22	37	16	40	20	43	18
GACCTCAAAATACAGC	alt_6053_new	0	0	0	0	0	0	0	0	0	0
CGCACTTGGCAATTTG	alt_6053_new	30	31	30	24	34	27	38	7	25	18
TACACCAGCGGACCAT	alt_6053_new	18	24	20	14	29	16	30	20	30	19
GACTGCGAAATTTAGC	alt_6053_new	0	0	0	0	0	0	0	0	0	0
TTCATACCCCGCTTTT	alt_6053_new	11	15	8	2	12	3	13	2	9	2
AACGTTCAGGGCGACC	alt_6053_new	11	18	11	20	15	10	25	10	19	10
TTTAGCCGTCAACAGT	alt_6053_new	23	21	7	6	16	5	22	11	14	3
GATTTTTACTCGTAAT	alt_6053_new	14	30	8	16	13	8	26	10	29	4
GTATGGTTGTGCGCCC	alt_6053_new	0	0	0	0	0	0	0	0	0	0
AAGTATTTTTAGATTT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
AATTGCGAATTGGCCG	alt_6053_new	0	0	0	0	0	0	0	0	0	0
AAGTGCTTTGAACTAG	alt_6053_new	10	24	23	18	37	14	22	15	30	19
GCCTTACTGGTCATAA	alt_6053_new	3	13	5	7	13	5	12	5	12	4
TAACCGTTTAGGAGCT	alt_6053_new	0	0	0	0	0	0	0	0	0	0
TCATTAAGACGCTTGC	alt_5065_upstream	51	43	57	38	34	49	46	39	45	33
CCCGAAGGCTTGGCGT	alt_5065_upstream	7	4	6	5	6	11	8	2	9	6
ACTGGAAAGTCATTTA	alt_5065_upstream	32	28	29	25	24	26	26	28	21	34
ATCAAGTTTACTGAGT	alt_5065_upstream	47	43	53	48	50	47	42	40	47	58
CCGTTTACTACGTAAG	alt_5065_upstream	5	14	9	5	11	4	10	3	6	7
AACCTCTGGGGCTTTT	alt_5065_upstream	49	31	41	33	35	49	36	34	37	35
GCGCCGTGATTCGGTT	alt_5065_upstream	20	7	19	15	14	14	10	16	9	8
CGCTACGGTGAAAGCC	alt_5065_upstream	24	30	37	15	21	19	23	15	23	19
GCAGGGTAGATCCCCA	alt_5065_upstream	28	31	30	29	27	23	27	38	31	34
GAGGAAGAGTTACCGG	alt_5065_upstream	31	18	33	18	15	35	16	21	18	16
GGGCTCTCTTAGAAAG	alt_5065_upstream	120	76	127	122	90	91	74	115	79	91
CCCTCTTAGCTCGATA	alt_5065_upstream	22	15	16	24	27	21	18	18	19	22
GCTTTCTCTGCCGGTG	alt_5065_upstream	10	14	7	20	10	13	13	10	14	12
GGACAGTTAAACTGGG	alt_5065_upstream	22	9	34	29	13	25	8	16	26	19
GTGATTCTTGTTCGGG	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
GTACCTCCTATCACAT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
CCGCCAGCTCAGGTTT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
GGTACCTATAGATTTT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TATACAGCTCCTGGAT	alt_5065_upstream	29	23	21	33	17	30	30	20	27	28
GTCCTCGCCCTATCCC	alt_5065_upstream	8	9	13	21	11	6	12	19	11	11
ACGTAATGCGATGTTA	alt_5065_upstream	43	44	63	57	43	47	33	36	36	52
GATGGCTCCCTCGACT	alt_5065_upstream	16	9	11	11	22	14	26	12	20	10
AGGACACGTCTCCCTA	alt_5065_upstream	16	19	29	27	31	10	21	25	28	19
ATTTTAGAGATCATAC	alt_5065_upstream	133	104	146	121	118	144	112	136	131	114
GCAGGCCGGATTTTAG	alt_5065_upstream	18	19	26	36	28	23	27	28	24	35
AATTTTGTACTGTACG	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
GATACCCACTGAGCAT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAATGCGGACTTC	alt_5065_upstream	10	6	12	4	8	11	7	6	11	2
TGGAATACTTAGTTTT	alt_5065_upstream	47	27	44	39	30	31	30	35	40	45
TTTGCCGTGCTGTCTG	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
GGTAATAGTGCTTCGG	alt_5065_upstream	15	18	31	15	20	19	22	17	17	25
ATGCTTATTTATTCGC	alt_5065_upstream	44	25	42	51	32	39	31	28	36	35
ATCGCGGCTTTTAGAC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
GGTACTGGCCTCTGTC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
CTTATACGCACCAGAC	alt_5065_upstream	38	66	58	52	53	47	59	44	72	44
CAAAATTGAATCATTG	alt_5065_upstream	1	0	0	1	0	2	0	1	1	0
CTCGATGGAAGCCGTT	alt_5065_upstream	21	16	21	25	14	22	17	19	15	20
TCTGCCCATCTAGAAC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTCATAGGCGTT	alt_5065_upstream	17	19	19	19	10	16	6	11	11	19
CGATTTATATAAGGGG	alt_5065_upstream	33	35	35	44	29	24	27	31	25	38
GGTTATGATCCGTTAT	alt_5065_upstream	54	48	58	48	49	65	35	69	38	48
TAATGTAACGCAATGC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGCCAATCGTTTC	alt_5065_upstream	2	4	1	0	2	0	5	0	3	0
GGATGTCTATTTCTCT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TCAGGCTTGGTTCAGT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
CTGGGAATATGACGCA	alt_5065_upstream	18	13	20	24	16	28	14	13	8	14
ATCATGTTAGAGTAGG	alt_5065_upstream	11	12	8	16	17	12	16	10	9	15
TGCTTACCCCCTACAT	alt_5065_upstream	11	6	7	3	4	9	6	3	9	3
TTGCTCTACGTTCTAG	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
AGGTAATAATGGGACT	alt_5065_upstream	212	117	251	218	134	201	134	188	173	159
CGCCAACTATCCTTGT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TATCACCTGCGTCAGC	alt_5065_upstream	28	21	44	24	12	11	10	20	16	15
TCGGATGAATACTAGT	alt_5065_upstream	108	79	99	96	85	120	84	75	72	83
GGTTTTTGGAACGGAT	alt_5065_upstream	42	45	59	49	41	54	31	44	50	49
GTCCATTTCCCCCTTA	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
GTCAGGCGCCGCATTT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGGGCCTCATTAG	alt_5065_upstream	17	13	18	16	8	11	21	18	8	13
TGAGCACGTCAAAATA	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
GTTCATAGCTTGAAGC	alt_5065_upstream	4	7	1	6	6	12	4	3	4	7
TGTCGAGATCCCCCCT	alt_5065_upstream	20	8	18	25	13	11	15	24	6	19
GTGCTTAACAGAGCTC	alt_5065_upstream	20	26	17	19	26	15	22	11	27	12
CGCGTGCGCGGGGCCT	alt_5065_upstream	40	17	37	27	18	29	17	42	17	36
ATCGGTAACACACGGG	alt_5065_upstream	29	38	47	32	24	23	36	21	42	19
GTCGCCGCGGTATACA	alt_5065_upstream	27	18	39	30	28	20	29	25	20	28
TAGCCTGTGTCATCAG	alt_5065_upstream	21	5	18	17	14	19	22	19	13	16
AAACAATGTATGAAAT	alt_5065_upstream	24	15	32	30	17	30	16	19	22	22
CGCCTAGCCCTATAGG	alt_5065_upstream	119	88	131	143	97	119	91	116	110	121
CTTTTGTTCATAGCTA	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGTCGGTGTACTA	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TCACGCTGCTGTTAAA	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTTATGGGTCTTG	alt_5065_upstream	31	14	31	21	13	17	10	14	13	13
CGCCTTGAGGTAGCTA	alt_5065_upstream	44	35	74	53	42	35	35	47	43	48
ACTTTGCGAACAAACT	alt_5065_upstream	10	9	17	17	12	10	12	8	12	24
TGTCCGATGCCCCGTG	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
ACAAAACGACTCGTCT	alt_5065_upstream	6	8	8	8	10	10	7	8	11	7
TCGCACGTTGTAAAAT	alt_5065_upstream	5	10	8	6	10	6	5	5	10	2
ATCACTCCTTCACTTT	alt_5065_upstream	63	61	72	73	45	69	53	60	63	68
AGTTGAATTGATGCCG	alt_5065_upstream	72	44	73	83	42	59	49	67	61	65
TGAACAGCATTTGGGT	alt_5065_upstream	28	18	30	22	17	30	14	12	25	19
GCTGCGCTGAGAACCC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCGACCCCCGCAC	alt_5065_upstream	7	8	23	15	10	12	9	15	17	11
AACGTTATAATTATAC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCTAGTCACTAT	alt_5065_upstream	14	16	22	13	11	17	15	8	7	10
AAAGTTACTTATTACG	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCTTATTACCGAT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGTTGTTCCGTCC	alt_5065_upstream	77	48	79	53	51	83	68	48	67	53
CCATGCCGATCTCTGT	alt_5065_upstream	20	27	16	23	9	11	13	15	12	18
CTCGGGAAAAAGGCCG	alt_5065_upstream	30	25	21	21	27	19	9	27	17	17
ATCCGCGCCACTACGG	alt_5065_upstream	131	98	166	119	114	125	113	116	125	123
TTACGTCCCCGTATGC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTAACTTCTTCTG	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
TACATTGCAGGATCTT	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
AACGATCAGGTGTACA	alt_5065_upstream	27	32	41	41	22	32	18	41	34	32
CCTGAATGGCTAAGTC	alt_5065_upstream	0	0	0	0	0	0	0	0	0	0
AGTAACAGCCCGCGAC	alt_5065_upstream	7	4	13	7	7	10	6	10	12	11
TCTAAATCTTGGGTGT	alt_5065_upstream	6	4	7	10	3	16	11	9	3	9
CTCAGTACATGATCAA	alt_5065_upstream	22	26	22	29	27	19	27	24	27	18
GGTTTAGTAGCAACGG	ref_1454_upstream	47	37	51	63	29	41	33	43	30	36
AGCATCGCCTCACAAA	alt_1454_upstream	106	75	109	133	60	86	81	106	95	92
ATGGATTTTACTGGTT	alt_1454_upstream	93	80	106	64	89	83	73	77	84	80
GGTTATACATCGGATC	alt_1454_upstream	17	11	24	24	19	26	13	25	14	27
CGGGGAATTGCGAATT	alt_1454_upstream	105	86	130	113	90	94	91	110	99	107
TTCTTAGAGCCAAGCA	alt_1454_upstream	55	60	82	68	63	52	59	71	60	60
CTTTTATATTGTTATG	alt_1454_upstream	14	10	18	14	19	12	9	11	11	17
TTGACAATGTAAGTTT	alt_1454_upstream	13	10	9	9	9	5	4	10	12	7
TTTAGGAAAGGTTTTC	alt_1454_upstream	14	13	18	6	13	8	9	14	10	12
AGAAGGTATTTCTTAT	alt_1454_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTCAAAGCTAATC	alt_1454_upstream	10	4	17	9	10	13	13	10	11	6
CCGTAATCTCCACATT	alt_1454_upstream	9	7	9	8	10	3	1	4	2	10
CCGTATGCCTCATCTT	alt_1454_upstream	32	29	46	40	25	38	21	28	40	41
ACCCACAGTAGCTTGC	alt_1454_upstream	88	114	103	97	146	76	129	68	121	76
GCAGTTCGTGCATGGG	alt_1454_upstream	21	10	18	14	22	26	9	12	12	15
AGACATTAACACCTGG	alt_1454_upstream	13	17	17	21	23	14	22	26	15	16
TGAATAGTCACCCTTT	alt_1454_upstream	49	24	33	48	23	28	26	40	31	27
TCTTCCATGGACATCC	alt_1454_upstream	14	8	13	21	17	16	7	12	13	10
TCATTTGACGACGCAC	alt_1454_upstream	88	80	101	78	73	76	67	73	51	74
CCAGTGCCCTTGTCTT	alt_1454_upstream	91	83	148	123	86	113	83	99	96	105
AAATTGCAAGATTATG	alt_1454_upstream	42	42	54	42	30	42	40	47	34	36
CTCTGTTTTGCCCTCT	alt_1454_upstream	19	15	12	7	12	15	11	18	16	10
GAGCTTACGCGCATGT	alt_1454_upstream	39	31	43	60	43	64	41	43	51	36
GATGTCTTAGTGTGCA	alt_1454_upstream	0	0	0	0	0	0	0	0	0	0
AGAGAGAGCCGTACGT	alt_1454_upstream	83	57	80	83	50	82	68	71	61	62
TGACACCGCGTCGCAA	alt_1454_upstream	61	39	59	47	44	53	46	45	44	31
TAGTTGAAAATGTTGT	alt_1454_upstream	190	155	215	195	155	199	143	192	194	170
TGAAGCCCGCTACCTT	alt_1454_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGGAAATACCGCA	alt_1454_upstream	37	15	34	27	19	32	26	32	24	23
CATGTGCAGAACGTTG	alt_1454_upstream	52	33	51	43	54	44	35	44	43	46
GGGGTATCTGATCGTG	alt_1454_upstream	57	45	70	64	44	60	34	51	45	48
TGAAATGCGTGCGTCC	alt_1454_upstream	49	45	55	67	58	56	67	51	53	53
TCCCCGCCGTCAATGC	alt_1454_upstream	0	9	0	0	11	1	11	0	7	0
TATTGACTGTCTATGA	alt_1454_upstream	49	45	57	54	47	41	42	57	41	47
TTGTTTTTGTGTTGCG	alt_1454_upstream	89	49	103	80	63	80	69	70	72	72
ATATCTGAGGTCATAT	alt_1454_upstream	47	33	61	64	37	44	43	49	23	64
GTCGTCCCTTGGGAGC	alt_1454_upstream	31	15	42	35	26	48	25	37	27	30
CTCCAACTACTTTCAT	alt_1454_upstream	5	6	12	11	10	16	13	15	9	7
TTTAACCGTCCTATTC	alt_1454_upstream	61	43	89	61	47	53	37	67	48	56
TGTTAGAACCGTCGAG	alt_1454_upstream	0	0	0	0	0	0	0	0	0	0
ATCACTTGACTACCAG	alt_1454_upstream	32	19	33	28	19	35	23	22	19	28
TGGCCACCGACCTGGT	alt_1454_upstream	38	15	39	25	29	33	33	25	36	18
AGAGGGCTCCCTTAGG	alt_1454_upstream	0	0	0	0	0	0	0	0	0	0
TTGGCTCAGGCATTCA	alt_1454_upstream	33	29	45	41	25	35	30	40	31	31
TGAACTTAATTGGTAC	alt_1454_upstream	93	58	121	94	82	85	76	107	84	75
ATATCGCTTAGATGCT	alt_1454_upstream	11	3	8	5	5	5	5	6	3	8
TATAACAAGGATCCCA	alt_1454_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTAGGTTCGCTCT	alt_1454_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTCCACGATCCCT	alt_1454_upstream	58	54	82	66	38	60	33	62	30	49
ATTATCGTAGACGGAC	alt_1454_upstream	182	158	185	184	182	208	194	166	165	161
GGCGTCAACGCAGTAG	alt_1454_upstream	4	6	9	15	12	13	12	5	3	9
CTCGTTTCGGTACTGC	alt_1454_upstream	5	4	3	1	7	8	4	4	2	2
GGGGGGTCACTCGCAG	alt_1454_upstream	92	62	108	99	75	100	70	101	82	103
CCTCTCAGTCGAGAGC	alt_1454_upstream	149	167	216	157	185	149	192	127	191	141
TAGGAATTAAGGTCTA	alt_2618_upstream	35	17	33	36	15	19	16	15	24	37
GCTTCGGTTCTGAAGG	alt_2618_upstream	54	34	82	48	25	51	24	59	29	52
CGGAATCAAATTCGGT	alt_2618_upstream	48	16	57	59	30	46	19	49	22	25
TGGACTCGTATGGCCA	alt_2618_upstream	79	39	86	62	23	74	35	61	37	73
TTGATATCGAAATCTT	alt_2618_upstream	45	16	52	48	16	60	23	53	14	27
TTGCGCGTATTGTAGC	alt_2618_upstream	17	8	24	18	10	17	7	9	13	17
GGGGCGTAAATGATAG	alt_2618_upstream	63	32	73	66	38	64	39	59	40	39
CGCCTATTAGAGGTGG	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
AAGCGACTTGGTGCAT	alt_2618_upstream	60	34	73	67	38	82	34	54	34	51
GTGGGGCACTCACGCC	alt_2618_upstream	121	54	142	128	51	118	51	115	72	112
TATGTCCTCTAGAACA	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
CTGAATTATCCTACAT	alt_2618_upstream	44	15	42	36	25	41	13	36	14	29
TGTAACCCTTGTTCGA	alt_2618_upstream	49	29	94	72	19	65	34	47	28	32
TGTTGGGCAAGTCCTT	alt_2618_upstream	24	7	22	32	9	23	6	13	14	11
GCTCTCGGTCGCAGGG	alt_2618_upstream	198	95	272	221	104	187	106	223	107	194
CCCGCGACAGTGCGGT	alt_2618_upstream	28	15	23	18	11	18	16	23	11	23
CTTCGCGGACGTTTAT	alt_2618_upstream	98	50	115	103	54	79	61	103	60	98
TTTCACATAGATGGAT	alt_2618_upstream	69	30	85	61	19	53	41	70	27	50
CTCGGGTGGGCCAGAC	alt_2618_upstream	175	70	211	194	77	165	65	182	70	149
GCCTCCGAAAAGATGT	alt_2618_upstream	155	61	220	194	61	160	70	163	68	181
TCTGATCCTCTAATTA	alt_2618_upstream	151	55	187	165	62	141	84	135	67	147
CCTCGCTCGCCTTAGG	alt_2618_upstream	32	41	31	42	29	36	39	31	54	23
CTATCTCGATCCTTTG	alt_2618_upstream	14	6	17	20	4	16	5	6	3	8
TTTAATCCCCGCGGAG	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
GTTAATTAACCTATCT	alt_2618_upstream	95	57	135	107	49	109	48	84	41	92
CCCTCTTTATGTGCAT	alt_2618_upstream	57	77	63	63	72	40	74	39	81	48
GGCATGTAGTTTTAGT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTTGTGGCTTCGG	alt_2618_upstream	3	1	0	2	0	1	0	1	3	1
TTTAGTTTTGCGGAAC	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
AGATCCCGACGTCAAT	alt_2618_upstream	53	29	53	42	28	48	34	36	27	39
GTCCGGCCGTTTCTTG	alt_2618_upstream	14	22	32	13	20	19	22	15	34	13
TACTCTCCACAGTTTA	alt_2618_upstream	76	38	74	59	63	59	47	58	50	52
TTTTTCTCCCGAGGCC	alt_2618_upstream	37	29	53	36	34	47	25	33	37	27
CCTGGCTGACGTCACT	alt_2618_upstream	153	51	177	153	59	140	69	140	60	152
GCCAACCATGTCGGTA	alt_2618_upstream	35	39	42	50	59	28	38	39	43	34
CTTCGTTCAAGTCTAT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
AGAATGGTGTTACTGA	alt_2618_upstream	77	25	69	71	31	69	38	56	44	70
TCCGGTGTTTAACTAT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAGAACCGTGACC	alt_2618_upstream	106	54	138	121	57	108	68	120	51	79
CTCCATTCCCACTCGG	alt_2618_upstream	161	92	203	172	77	161	105	153	99	142
GGTAGCGAGCTATATC	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTCCTGCTCGCATCAC	alt_2618_upstream	4	1	3	8	3	3	5	2	3	0
ATTTCGCGCCGCTCCT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TCCTAGCTCAAACAAT	alt_2618_upstream	31	24	36	22	17	24	28	38	23	16
CGTCTATGGTGGTTTT	alt_2618_upstream	9	8	13	11	8	11	9	11	9	11
AGATTTCGGTATTGGC	alt_2618_upstream	81	54	127	90	54	96	43	105	60	94
GTCACCGTAACTGTAT	alt_2618_upstream	2	3	7	8	11	8	5	7	7	4
CTTACGATCTAATTAA	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TACGCCTCTTGTCTTT	alt_2618_upstream	45	27	61	59	19	49	30	42	29	39
GCTGGTTGCAACACTT	alt_2618_upstream	228	114	246	229	133	202	119	199	104	166
GACCAGTATATCTTAT	alt_2618_upstream	207	84	254	251	104	180	85	207	113	190
TTTGTTTGCATTTAGG	alt_2618_upstream	85	31	136	109	63	88	51	88	53	105
ATAAGCGCCATGGGTG	alt_2618_upstream	48	42	86	64	39	78	38	69	42	62
CTACCTCTGAGCATGT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTATGCAATGCTATTT	alt_2618_upstream	33	10	40	37	12	30	9	21	11	28
GCCTTGCTGCCGTGTA	alt_2618_upstream	85	51	99	109	55	83	50	97	59	85
GCAGTCCGAAGTACTT	alt_2618_upstream	197	113	215	216	106	155	112	182	110	185
ATATCGGGTGAATTAG	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
CTCGTATATGTTATGT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
ATGGGGGCTGTAGGTT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTAGCAACCTCT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TACAGCGGTCATTTCT	alt_2618_upstream	74	32	79	69	29	57	39	63	38	70
CTTGTCGGGGGTTTGT	alt_2618_upstream	27	11	36	35	7	39	15	21	8	31
GTCCACGTCTCACCGG	alt_2618_upstream	286	143	396	352	132	283	149	284	127	301
TTGCTCATTCCGGGCG	alt_2618_upstream	112	40	142	119	52	130	38	109	44	107
TTCGAGTTTCCCTTTG	alt_2618_upstream	74	43	111	82	39	66	53	74	49	79
CCTTCTTTTTCACGGT	alt_2618_upstream	23	5	24	12	6	16	7	17	12	16
ATCGTTCCAAGGTCCA	alt_2618_upstream	37	17	43	32	23	52	14	46	18	47
AAGTTCACATTTTCGT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGCTTTGGCTGAA	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
CATTAGGCACAGTTTT	alt_2618_upstream	20	15	32	25	8	27	14	33	7	29
ACTGAAAGGCGCTGAA	alt_2618_upstream	94	53	94	108	34	78	45	80	53	82
GATCTTTGAGGCGGTG	alt_2618_upstream	41	12	33	37	22	30	13	45	30	29
CAGCGTATTTCTATGG	alt_2618_upstream	21	7	45	39	14	24	15	23	13	26
GGGAAGTTTATGAAGA	alt_2618_upstream	94	49	112	99	42	89	34	103	54	85
CATCTGAGAACCTGGG	alt_2618_upstream	19	11	17	22	10	15	11	16	2	14
CCTTGATTCTTGGAAG	alt_2618_upstream	86	48	114	103	47	77	57	82	52	49
CTCCGGGCTCCGCAGT	alt_2618_upstream	266	113	352	300	142	262	152	248	133	221
GCTAAGGTTCCGATGA	alt_2618_upstream	159	81	160	139	63	116	70	112	65	131
GCATTTTTCTTTTGCT	alt_2618_upstream	43	14	60	48	26	56	28	45	15	48
CTAAACCTCAATTGCT	alt_2618_upstream	192	157	224	211	117	159	102	193	126	157
AGGTTTTAAATGCGCT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCCTCCCAAATT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTCAACTCGTGT	alt_2618_upstream	22	29	39	30	16	42	23	27	31	33
ATCTTCGCTAACTGGT	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
GCACCTCGTGTCAGTA	alt_2618_upstream	48	20	73	45	26	39	30	41	41	34
GGATACCTTTGCGTTA	alt_2618_upstream	58	21	89	80	40	59	41	48	24	57
TGTTCGATATCGTCGA	alt_2618_upstream	38	15	44	37	17	19	14	28	17	28
ATTCGATTCACCCCAG	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGTATCGTTTGG	alt_2618_upstream	0	0	0	0	0	0	0	0	0	0
TTAACTGTGCTGGCCT	alt_2618_upstream	256	119	294	313	128	249	127	255	138	266
GATGGTGTTTCTCGGT	alt_2618_upstream	192	117	303	275	110	249	102	201	107	212
CTCAAGATTCAGGATC	alt_2618_upstream	18	6	36	13	15	19	3	15	5	22
ATTCGTGTTCAGTGCG	alt_2618_upstream	168	72	190	167	116	162	149	212	98	147
TTAGCCCTATTGTGAT	alt_2618_upstream	81	61	118	101	57	83	75	97	50	72
GTCTACTTTCGGAAGT	ref_5125_RC	78	80	88	72	63	65	76	75	88	63
TTCGTACTAGCAGACC	ref_5125_RC	30	25	43	32	42	34	44	34	41	29
TTATAGCTCCCGCCCA	ref_5125_RC	43	48	57	60	38	54	29	41	44	36
TAAGGAAGTTTGTTAT	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
ACAAAGGCTTTGTATT	ref_5125_RC	28	15	37	25	30	19	23	19	28	22
CGCAAAACATTCGTTC	ref_5125_RC	123	74	136	119	101	108	107	109	95	108
AGCTTTGGTTCATCGT	ref_5125_RC	2	2	1	0	3	4	0	3	1	3
TCGTGATCTTGATTAA	ref_5125_RC	8	6	15	12	9	6	7	8	6	8
GGGGCTGTATGGACAC	ref_5125_RC	26	19	25	17	23	29	23	21	15	17
GTCGCAGCGCCCGCCG	ref_5125_RC	226	226	322	249	263	196	241	254	274	210
CCGGAAATCCGGTAAC	ref_5125_RC	50	46	63	72	59	41	55	55	57	48
GGTTGATGAATCATCT	ref_5125_RC	14	8	20	22	15	15	14	19	17	15
CTACGCTTATCCTTAA	ref_5125_RC	78	67	78	65	69	46	70	61	63	49
ATTTCGTGACCTGCCT	ref_5125_RC	116	87	123	86	99	113	85	97	96	118
TCTAGCCCATTCCATT	ref_5125_RC	16	18	34	16	32	17	24	22	25	17
GCGCATCCCCCGAATA	ref_5125_RC	5	7	17	5	18	10	9	9	12	11
AACCGTTCTTGTCACG	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
ATTTTCCCTCTTGGAT	ref_5125_RC	11	11	16	5	10	9	17	6	8	6
CATACCGCACACAGGT	ref_5125_RC	14	10	11	5	6	10	8	14	5	9
ACGGCTCTCTGCGTCT	ref_5125_RC	123	118	136	140	111	109	101	135	115	101
TCTGTTCCTGTCTCAT	ref_5125_RC	32	38	51	46	43	33	33	38	38	40
CATGGTCAGGCTATAC	ref_5125_RC	18	19	22	33	19	12	17	21	24	19
ACCAGATACTGGCTTA	ref_5125_RC	22	26	21	22	18	7	22	12	24	12
TCGACTCTCGTGATAA	ref_5125_RC	81	58	84	77	60	57	68	75	44	59
TATCAGGCTGCCCGAG	ref_5125_RC	58	89	75	66	84	79	104	73	90	56
AAGACTGCTCCATAAT	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
CGGGCTACTGTTATAT	ref_5125_RC	24	18	38	24	27	15	28	18	29	12
AGGTGAAGGTCAGCCC	ref_5125_RC	17	4	13	12	9	12	13	10	8	12
AGGATGAACGTAGCCG	ref_5125_RC	10	15	13	11	11	12	13	10	14	9
TGAGGCGTACTTGTCG	ref_5125_RC	53	61	62	61	48	64	65	56	43	54
CCGGATATCCGATTGT	ref_5125_RC	9	46	11	8	43	3	41	8	41	6
GGTTCGCTCCTAGCGC	ref_5125_RC	24	16	18	25	10	10	12	9	16	21
TGGGCGCCATTATCAC	ref_5125_RC	57	31	76	60	35	68	48	63	44	43
AGCGTCAATTGGGTCA	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
ACCCCGCATTGTTGCT	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
CTGGAAAACTTCTTTC	ref_5125_RC	83	60	78	82	70	76	73	48	69	51
ATTAGGACTAAGAGTA	ref_5125_RC	18	28	38	31	30	22	21	16	24	22
GGTGGGTTGCGTGCGG	ref_5125_RC	132	92	147	141	120	83	102	104	100	87
GTACGTATGCGCATCT	ref_5125_RC	23	28	31	33	20	21	25	21	24	26
ATTCCGATATCTCGTC	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
GTTATCGTCTGAAGTG	ref_5125_RC	4	7	6	4	4	4	5	11	7	5
GCGTTTTTATATATTC	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
ACCGCCGAATATTGAC	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
TGGCAATTTAATTAAA	ref_5125_RC	14	18	21	7	13	13	9	14	16	20
CCCCCGTACCGGTCTA	ref_5125_RC	9	8	9	19	14	10	10	9	14	9
GTGGTTTGTTTTAATT	ref_5125_RC	25	26	30	18	27	20	29	24	22	28
TCCCGGCTCGTCTTTC	ref_5125_RC	9	10	13	10	18	9	30	11	9	10
AAGGTCGAACGCCTAT	ref_5125_RC	21	15	14	18	15	15	5	19	26	13
CTTAGCAACCCCATTC	ref_5125_RC	49	55	41	59	59	29	70	70	76	38
TCTGACCGGTATCCTC	ref_5125_RC	10	17	17	1	21	9	13	8	13	11
TTGTAGACGTCCTTTC	ref_5125_RC	34	28	34	16	25	35	24	16	21	32
GTGGTTTTGTCAGGAC	ref_5125_RC	13	12	6	13	14	6	18	13	11	13
TTCTTCGTGCTATGAG	ref_5125_RC	16	6	15	26	13	22	10	17	10	15
TGTAATAGTTTCACCG	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
ATATTGCGTACAATGT	ref_5125_RC	7	18	14	14	22	11	11	11	18	16
ATTTGCGTATTTGTTG	ref_5125_RC	39	37	38	36	31	34	44	56	43	40
TGACACGACCGCCCAA	ref_5125_RC	6	5	14	11	11	11	10	2	13	8
TTACTCACCTCCGGTA	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
GTATTGGTGACATTTA	ref_5125_RC	28	35	49	40	41	33	39	43	39	41
TACTGTGTACGTGACG	ref_5125_RC	87	91	105	100	78	55	70	107	96	55
GCCTAGCGCCGGTTCT	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
GTCTGGAATTGCGATT	ref_5125_RC	83	93	118	83	85	62	89	76	106	68
AGGCGTAAAGTGCAGG	ref_5125_RC	41	24	31	37	21	36	31	41	44	34
GGCGGACCGAGATATC	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
TATTATATTGCCGGTA	ref_5125_RC	25	24	33	26	37	27	27	22	29	24
GAGCTACTAGAAGTTC	ref_5125_RC	164	138	182	147	137	159	156	127	170	133
GTTAGCACATCAATCG	ref_5125_RC	43	59	62	59	51	59	59	65	51	57
GTTATGATTGAGAGTC	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
CTCCACTCATATCTAG	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
TTTTTTCCTGAGCCTT	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
TCTATCAGTCAATAGG	ref_5125_RC	56	69	84	78	89	51	81	55	65	49
CCAGATGTATCGCGAG	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
TTTCATATTGGGCTAC	ref_5125_RC	21	28	26	15	24	37	17	21	26	23
GTCCGAGGGGGCGGTC	ref_5125_RC	55	83	83	87	100	65	99	82	95	62
GGACATATCCATGGTT	ref_5125_RC	17	10	21	12	19	17	13	19	16	20
TTACCGTTTGACTACG	ref_5125_RC	0	0	0	0	0	0	0	0	0	0
CGAGTCAATGACTGTT	ref_5125_RC	21	44	34	34	23	19	14	22	29	25
GGCATGTTTTTATGGT	ref_5750_new	9	9	7	5	13	6	8	5	7	4
GCACCATGTGTTCAGT	ref_5750_new	3	8	3	3	3	3	4	2	1	5
GCAATTCCTGTTGGTG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CCGTTGGATCATCCCC	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CCATGCTACGTTACCT	ref_5750_new	2	7	5	1	8	3	6	4	12	12
AAGATTAGTGCCGATT	ref_5750_new	19	34	35	31	35	39	36	31	42	25
CTTGGTAGCGATTCCA	ref_5750_new	68	91	102	76	100	63	123	74	98	76
GTGTCAATACAGTCAG	ref_5750_new	43	46	40	36	47	34	36	37	59	39
GAGCCGGGTCGAATGT	ref_5750_new	105	87	107	93	88	85	104	83	116	67
TTCGATCGTCCTCGGG	ref_5750_new	54	36	33	46	34	36	34	42	44	36
GTGTGCGTTCTAAGAG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
TAAATAACTTTATTTT	ref_5750_new	27	29	42	30	45	46	28	29	36	35
AACCGGTATTTTCGTT	ref_5750_new	40	62	48	45	41	59	61	30	73	34
TACGTATCACTACTAA	ref_5750_new	3	4	2	0	2	3	0	2	0	2
TACCTACTACATCCTT	ref_5750_new	10	21	14	12	29	3	26	7	17	5
CGATTATAACATTATT	ref_5750_new	18	23	21	15	22	29	28	12	25	20
AAGCCAGTTATTGATT	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CTGACGTCGCGTTTGA	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CGCCAAGGGGCCCCCT	ref_5750_new	45	31	74	61	49	42	45	37	41	58
TAACGCCCCCAAGGAT	ref_5750_new	5	5	3	8	4	13	10	1	9	4
TCTGTGATATAACATG	ref_5750_new	27	26	39	34	25	20	21	25	32	28
CGAGTATGACATCCGA	ref_5750_new	94	87	106	82	77	74	100	62	102	73
ATTAGGGATAAGTTTG	ref_5750_new	50	61	62	48	74	51	61	39	57	40
GTTGGTATTTTCAACG	ref_5750_new	22	23	32	19	19	22	19	21	32	17
TAATACGTTCTAGTGT	ref_5750_new	0	0	0	0	0	0	0	0	0	0
GGGCCTCGAAAACGTA	ref_5750_new	0	0	1	0	0	0	0	0	0	0
TTTCATGGGTCCAAAT	ref_5750_new	13	12	20	14	8	8	10	2	7	13
AAATAAGAAATTGGCG	ref_5750_new	31	28	31	26	25	26	30	12	35	36
TGGTATTCGCAAACTT	ref_5750_new	10	11	24	16	18	11	12	13	15	13
GGCAAGTACCTGGTAG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CGCAGATATACGGTCG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
AGCCACCCCTAACAAC	ref_5750_new	13	11	13	14	14	12	8	11	6	6
TGGAATGATGGAGTTT	ref_5750_new	64	52	87	71	70	60	51	59	73	83
GAAACATCCAGGATGG	ref_5750_new	82	77	101	92	81	66	63	77	77	69
CCAGACTTCCAGGATC	ref_5750_new	23	26	25	19	45	21	32	20	32	27
CCTTGGTGCATTAACG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
TTATCTTTTACAAGGA	ref_5750_new	3	2	3	0	2	3	4	1	1	3
GGAGTTTCTCTCTCCG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
TCTTTTAGTGTTTATG	ref_5750_new	60	73	69	65	88	53	78	50	79	42
TGTTGCACTTCAAGTG	ref_5750_new	43	75	58	37	51	39	62	57	62	27
GAGACGGCAGGATCCA	ref_5750_new	0	0	0	0	0	0	0	0	0	0
AAGCCCCGGGAGACAA	ref_5750_new	64	66	77	55	65	41	59	48	58	53
TAGTCGGTAATAACGT	ref_5750_new	9	9	10	16	15	9	7	13	19	7
ATATCATTTTAGGCAT	ref_5750_new	7	12	20	21	14	21	11	17	13	9
GATCTGATTTTAAAAT	ref_5750_new	3	3	2	5	4	2	1	3	4	6
ATATATTAGTTCTGGT	ref_5750_new	0	0	0	0	0	0	0	0	0	0
ATCTCCAATGACTAAG	ref_5750_new	12	24	23	23	18	15	13	14	8	14
CGTCTAAGACTTCATC	ref_5750_new	41	49	51	59	63	38	40	42	60	51
TGGTATGCTCCTTGGA	ref_5750_new	12	11	9	9	8	5	4	5	10	1
GCCCTTTTTTATCAAT	ref_5750_new	31	33	45	33	44	26	37	28	39	26
GGGCCTTGAAAACGTA	ref_5750_new	504	503	632	530	424	459	554	438	544	405
TGCGTTTTATTCCGGG	ref_5750_new	114	126	159	121	130	107	128	81	150	96
GCATCTAGAGTCGACG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CAGGCTCTCATTCTCC	ref_5750_new	67	56	78	43	60	38	47	56	66	34
CTGCACAGGCAAGTAG	ref_5750_new	41	32	45	47	42	29	30	29	40	34
GTAAATTTTTTTGACA	ref_5750_new	64	83	79	64	70	71	82	51	105	48
AGATGTCAGCATGGTT	ref_5750_new	23	44	49	39	49	47	43	21	27	27
GGTAAGCGGTTTGACT	ref_5750_new	22	27	42	32	33	21	18	39	31	36
GTTACCATGCAATATA	ref_5750_new	9	20	13	7	17	7	15	5	19	9
ACGCCTTGTCTCAGCT	ref_5750_new	14	12	33	13	12	23	19	19	28	21
CCATGATTTGGCGACG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
GGAACCTCTAACCTCA	ref_5750_new	25	20	34	27	21	22	23	25	25	30
TTCTAAGAAAATCTCA	ref_5750_new	18	28	19	19	32	18	39	18	51	20
TCCCCTTCGCGTCTTC	ref_5750_new	2	8	0	1	2	0	6	1	3	1
CCCTTCACGAGAACGG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
TAGACCAGCTGAGAAG	ref_5750_new	296	329	365	337	363	300	325	262	367	265
GAATTGCTTGTAGAGG	ref_5750_new	50	36	51	36	41	26	44	39	52	29
TTGAACAATTTACTCT	ref_5750_new	16	23	21	30	26	24	31	16	20	17
GTTTGCATCTTGTTTA	ref_5750_new	50	48	47	48	57	46	44	33	38	50
CTGGGTGCCCCGTAGG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
TCACAGTTCGTACTGT	ref_5750_new	15	35	34	28	36	29	42	29	30	22
CCGTATGACTCACTTT	ref_5750_new	0	5	2	2	2	0	3	0	2	0
ACAATGTTGCTATTGC	ref_5750_new	47	37	44	49	47	34	36	28	43	45
AGGGCTCCGTAATTCT	ref_5750_new	108	103	116	96	107	112	112	97	122	126
GGGTGGGGCAGTCAGT	ref_5750_new	0	0	0	0	0	0	0	0	0	0
AGTTCTACCTCGCTTG	ref_5750_new	89	97	107	92	92	74	83	78	103	62
GTGCCCAAGATGGCGC	ref_5750_new	0	0	0	0	0	0	0	0	0	0
ATTCTATCGGGCTGGC	ref_5750_new	30	24	27	20	23	29	39	19	27	36
AATTATCCAAAGGTTT	ref_5750_new	33	25	44	27	35	32	28	34	32	38
CGTTCATAGATTTTAA	ref_5750_new	61	76	86	84	60	58	86	51	59	57
TATGCTATTGCGAAGG	ref_5750_new	4	9	13	7	5	10	4	12	6	8
GGTCATTTCCTCGACG	ref_5750_new	16	29	24	19	29	20	18	10	29	15
CCGCTACTGTGCATTA	ref_5750_new	3	8	4	6	10	3	14	7	8	3
GCTTGACGCTTCGCCG	ref_5750_new	35	37	43	33	46	40	39	58	47	38
GCGATAGTGCATTATG	ref_5750_new	9	15	18	19	15	21	15	15	21	18
TTGCAGGATCTTCTGG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
GATGTTGGCAAGATTC	ref_5750_new	0	0	0	0	0	0	0	0	0	0
AAACCAATACGTTAAT	ref_5750_new	21	16	17	20	14	11	25	19	19	18
TGTATTGCAACAACTA	ref_5750_new	21	19	24	20	23	22	27	15	27	17
CGTGGTTTCTAGAACA	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CGTCATGTATTTGTCT	ref_5750_new	15	23	16	17	18	7	18	7	14	13
CCCACGCATTTCTCCA	ref_5750_new	12	9	12	8	7	6	8	6	12	14
TTGGTCCTTTCTAGAT	ref_5750_new	0	0	0	0	0	0	0	0	0	0
TGTGTCGTTCAGATAG	ref_5750_new	0	0	0	0	0	0	0	0	0	0
TAGTTTCGTGATCCTA	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CGCTTAGATACATTGG	ref_5750_new	10	14	20	9	12	14	5	16	19	9
CGGGAGTTTTTCAACA	ref_5750_new	32	41	38	44	43	42	42	36	41	37
CAAACGGTGTATTATG	ref_5750_new	98	105	110	79	98	80	105	60	90	55
TCGTCCGTTGTCAGCC	ref_5750_new	21	14	25	19	26	12	18	23	19	19
GCTCTACCATGAAAAA	ref_5750_new	0	0	0	0	0	0	0	0	0	0
CACCATTTCTGCCGTG	alt_2208_upstream	88	131	108	71	148	72	137	75	141	88
TTTCACAAGACCACCT	alt_2208_upstream	22	24	33	28	33	29	24	32	39	29
GTCGACGCACTTGGTA	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGTGCTCGTGATT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCAATGGAATTCG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTTGGATTCTTTAGGG	alt_2208_upstream	49	106	75	66	95	68	96	64	91	73
GTGCGGAGCGGCTTTA	alt_2208_upstream	5	24	18	11	31	16	22	14	25	13
CTGGTACACTACACTC	alt_2208_upstream	5	15	4	4	11	5	6	3	14	2
GGACTATGGTTCGGGC	alt_2208_upstream	31	59	40	27	46	28	37	35	44	22
AGGGTGGATTCCTGAT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CACACTCCATCCGCAT	alt_2208_upstream	18	32	10	8	29	10	31	6	25	13
TCCAATCAAACAGAGG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
ACTGTTGGTTCCAACG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTGTGCATAGGCA	alt_2208_upstream	15	16	12	9	15	11	17	10	26	18
TTGGCCCCAGCATCGC	alt_2208_upstream	2	7	6	5	8	5	9	4	11	5
GACGGTATCCATTAAT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCTCTAGTCCTATTTT	alt_2208_upstream	20	48	35	24	29	23	45	20	36	19
ATGTCGATATGTAGTG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGGTATGCGACTT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
ACCTACCGTCTTACCT	alt_2208_upstream	3	25	2	2	36	8	30	3	38	2
TCTGTCGGGTACGCGC	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTCCGCAGGCGGTGAA	alt_2208_upstream	12	21	26	9	31	26	36	27	25	16
TGTGACCCGGAGTTTT	alt_2208_upstream	14	20	24	15	22	16	27	12	18	14
ACTCGTATAGCAATCT	alt_2208_upstream	55	67	60	43	60	41	61	48	60	29
CTGGTGTTCCCCTAGT	alt_2208_upstream	11	18	13	9	19	5	12	8	10	11
TTCTCCGCATCTTTGA	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTGTCGTACGCCA	alt_2208_upstream	5	18	5	10	17	5	20	4	10	8
TATAGTTTGGTCATTT	alt_2208_upstream	20	31	20	32	33	17	32	10	20	9
GTTCAGACTATACTCC	alt_2208_upstream	2	10	6	0	21	3	20	4	19	6
ATGCAGTTTCCCTAAC	alt_2208_upstream	24	44	38	36	46	32	43	29	40	28
ACTCATCCTAGTCGTG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
AACTTCAGAGTATTGA	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGCGTCTGGGCAC	alt_2208_upstream	79	134	77	86	160	72	141	91	138	63
GTGCGGCCGCATTTCT	alt_2208_upstream	25	52	41	30	47	40	48	39	57	31
CCTGTTTTTTATGGAC	alt_2208_upstream	28	65	52	37	79	56	78	45	78	38
AGATTGCAGTTTTCTG	alt_2208_upstream	22	35	20	19	40	14	22	17	32	13
AGTGTGTCAACGCAAG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTTCGGTCGTGCG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTACTTGCCGTCTAAC	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CTCCAGCCTTAATGCT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
GTCGATGCTCAGGTAT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGGATTTTGGTGCAAA	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
AGACATGATTTTCCGT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCCTACTAGGTCC	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
GGGGTTTTCGAGATTG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CGCGGATTTTTTACTC	alt_2208_upstream	18	21	26	26	23	22	22	20	22	20
CAGTCCTTTGTTTGGA	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCCCACGGCAAGG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
ATGACTCGCCACGAAA	alt_2208_upstream	7	10	6	5	13	4	9	3	5	9
ATTCGGGGTGGAAAAC	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTACAAGCACCGGTAC	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CATACTCGACTAAGCT	alt_2208_upstream	17	33	31	21	38	15	26	26	40	28
TTTTTATCGATCGGGA	alt_2208_upstream	3	4	11	13	7	10	6	8	8	9
AACTTACAACTACTGT	alt_2208_upstream	35	39	49	27	56	29	42	27	48	29
GTATCTCGAAGGATTT	alt_2208_upstream	14	37	20	33	37	19	30	27	34	25
AAACTGGTAGGTACGT	alt_2208_upstream	21	12	23	10	15	16	26	13	19	17
TAGGGGACATTAAAGA	alt_2208_upstream	28	23	19	22	22	24	50	19	43	19
GTGACGCTCCTCCCTT	alt_2208_upstream	20	29	30	16	42	30	29	20	32	19
AGAACCCAATGTCCAC	alt_2208_upstream	94	155	125	85	134	88	153	79	132	67
AGAACCTGGTGCGATT	alt_2208_upstream	13	35	20	13	40	16	26	14	30	16
TGCAACTCCCTCGCCT	alt_2208_upstream	5	31	10	9	39	6	39	7	34	0
CCACTAATAGTATGCT	alt_2208_upstream	147	565	197	158	608	143	551	158	626	143
CCAAAAAATCGGGGGC	alt_2208_upstream	19	44	18	30	37	14	35	18	37	20
GTAACGTTTTTGAAGG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTTAACTCTTCCTACA	alt_2208_upstream	5	3	6	7	19	10	15	13	8	13
GCGGAATAACCGCATC	alt_2208_upstream	34	44	39	29	43	29	51	33	62	33
CATCGGCTACTGGGTG	alt_2208_upstream	12	22	10	6	13	11	17	12	22	4
GTATTTATTTTTATGG	alt_2208_upstream	58	80	84	81	108	68	96	63	114	70
CTTTTTCCAAGTCAAT	alt_2208_upstream	47	79	75	52	86	44	108	42	83	39
TGGTTCCCTGGTAGTG	alt_2208_upstream	37	35	43	37	50	28	45	31	28	30
AGCAAATTTGTCCTCA	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CCCAGTCAATCTTTCC	alt_2208_upstream	96	133	87	95	145	86	150	84	169	92
AAGCGTCAGTTAATGT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TATCGTTCGGTAACAG	alt_2208_upstream	13	9	9	11	6	4	7	6	22	1
CGCGCAGTGTTTTGTC	alt_2208_upstream	7	15	20	20	13	15	28	16	22	21
ACCGAGTCTGATCATT	alt_2208_upstream	51	91	86	35	98	67	88	60	101	56
ATTGCCTTTATTTCTC	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCGAGGTTTGGCC	alt_2208_upstream	3	3	3	4	8	3	16	7	7	6
TCCTCCCCACGACGTG	alt_2208_upstream	2	12	4	0	15	3	17	0	15	4
AGTACCGTTTTAGTGA	alt_2208_upstream	3	9	9	7	5	9	7	7	10	5
CTTCTGATCCCATTCG	alt_2208_upstream	1	0	0	2	2	2	3	3	1	1
GTGCGGACGTAGAGGT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TCTGATACTACCAGTG	alt_2208_upstream	36	56	36	23	66	39	49	23	60	29
ATACGCGGACTACCTT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CACATTATCGGACTTT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTGTGTCATTTT	alt_2208_upstream	8	8	9	9	10	5	5	11	12	6
AACCTCCATGTATTGG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTTCACAAGACAACCT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTCCGCTTATCC	alt_2208_upstream	17	47	25	23	40	21	26	18	28	14
CTAGCTCGAAGGTACG	alt_2208_upstream	9	9	9	19	24	8	19	12	27	7
TTATCTCTAGTTACGC	alt_2208_upstream	55	76	91	67	88	83	94	67	103	38
ATAATAGATCGGTCTT	alt_2208_upstream	17	23	16	14	18	17	21	9	21	16
AATCCGAATCTGGGCA	alt_2208_upstream	31	27	34	20	25	28	29	21	26	16
TCGAAGTGTTTCGATC	alt_2208_upstream	24	38	25	26	35	24	38	30	41	20
CATAATTTGAACTATG	alt_2208_upstream	25	37	29	30	43	34	30	23	23	23
ATGTTAATGTTGCTAG	alt_2208_upstream	14	26	20	17	22	13	28	25	23	27
TATCCAGCAATCTCGT	alt_2208_upstream	6	1	9	12	6	8	7	13	5	10
TTGTCGAGCCGTTTTT	alt_2208_upstream	17	30	26	27	52	36	37	21	35	13
GGTGGAGTCTTTGCTG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
ATGATTCTGAAAGGGT	alt_2208_upstream	76	117	71	85	116	82	112	87	146	63
CTAAGGGTCTCGCCTC	alt_2208_upstream	7	17	17	20	14	12	12	9	20	13
GCCGGTTCGGTTCCTC	alt_2208_upstream	2	8	5	2	6	2	7	1	7	1
GTTTCCGTGCCCTTTG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
CCGGTATTACAGACGG	alt_2208_upstream	32	58	56	41	73	53	65	44	63	40
CGGGAATGCTTATCCT	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TTTGACACCAGGTGCG	alt_2208_upstream	0	0	0	0	0	0	0	0	0	0
TGCATCTTTCCAGGTT	alt_2208_upstream	13	23	10	16	13	14	25	10	28	14
TCACAGGGGGGGGGTT	ref_5055_reverse	25	22	29	20	24	33	24	23	27	23
AGGTTCCCTCAGATTG	ref_5055_reverse	35	31	42	40	45	55	59	26	50	39
GCTTTGCACCTGAAAT	ref_5055_reverse	142	229	159	135	179	151	212	144	206	105
TCTGCGGCCTTAGAAC	ref_5055_reverse	56	52	63	57	97	56	81	56	84	58
ATTTCTCGTATATGGT	ref_5055_reverse	25	42	39	39	29	32	39	28	45	25
TAGATAGAGTCTGCTA	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
GGATCTACGGAGAATC	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
AACGTGTTGGGGCCTC	ref_5055_reverse	167	162	194	183	198	166	180	142	240	149
TCACAGGGGGGGGGGT	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
TATTCGCCGCACACAG	ref_5055_reverse	8	8	11	4	9	4	8	8	6	4
TCACAGGGGGGGGTTT	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAGGTATCCCGGT	ref_5055_reverse	83	113	134	70	116	81	93	72	123	81
GTATTCGCTTTTCTAC	ref_5055_reverse	32	34	35	40	51	20	31	34	38	28
CGTTCCAGGGCTTCGG	ref_5055_reverse	4	4	9	2	4	5	2	4	14	5
CTCGTGCTCTTTCCGT	ref_5055_reverse	6	9	4	2	4	2	7	6	10	4
TGTAATTACTTGCGCT	ref_5055_reverse	29	31	22	15	43	14	32	16	39	18
TTTGATTGAGTATACG	ref_5055_reverse	160	250	165	154	229	150	297	161	301	120
GATGGACACTAGAATT	ref_5055_reverse	130	136	149	124	132	125	152	127	159	122
TCGCAGGCCCCTGTCT	ref_5055_reverse	33	40	33	34	47	28	27	27	34	30
TCAATTTCACTCTTAT	ref_5055_reverse	4	4	7	3	5	5	5	3	2	4
ATGTGATGTGGACAAG	ref_5055_reverse	86	109	122	89	98	87	98	90	116	66
TATCGCAACCTTTCCG	ref_5055_reverse	20	16	26	24	33	30	20	19	31	20
TGCTTCATCATATTCG	ref_5055_reverse	3	0	0	1	4	0	4	2	2	0
ATAGTCTGCGTATTTC	ref_5055_reverse	32	37	54	26	36	30	35	28	52	23
AATCAATAGAATATGG	ref_5055_reverse	95	102	118	65	115	92	109	89	106	93
TGTACAGAGTTGATGG	ref_5055_reverse	10	6	17	13	23	13	23	3	23	9
AAGCGGAAGGGGTCAG	ref_5055_reverse	103	185	187	136	169	98	180	116	192	105
GTGTTTTCTAGTTGCG	ref_5055_reverse	9	14	11	6	16	8	12	2	6	5
ATATGGTCACTTTGCG	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
AGCGGTAAAACACAAC	ref_5055_reverse	47	40	86	53	59	61	82	44	65	49
TATTGGGCTCTAACCG	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTCTGCGCCGTAT	ref_5055_reverse	2	3	4	1	6	1	2	1	6	2
TGCGTGGGTTAATCGA	ref_5055_reverse	13	18	11	27	24	19	25	22	24	19
GCGCGGGAAACTGCTC	ref_5055_reverse	6	7	2	0	3	5	1	4	4	1
AACTTTTGACTCTCGT	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGGCTCATGAATG	ref_5055_reverse	18	22	30	19	25	23	39	25	17	25
TGTCCTTTTTCGTCTA	ref_5055_reverse	16	35	18	26	15	18	17	14	17	10
GCCTTGGGAGTAGGGG	ref_5055_reverse	67	88	91	84	56	80	83	76	96	61
AGCTCCCATCCAATGG	ref_5055_reverse	54	55	42	63	76	47	57	65	74	45
TGTCGAATTAGTGATG	ref_5055_reverse	27	26	30	28	19	31	25	18	41	34
GCGCCAACTTCGGACA	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
CTAGAACGGAGTGGGT	ref_5055_reverse	11	22	11	5	13	3	28	10	18	8
CTTCATATACCTCTAT	ref_5055_reverse	56	114	60	60	90	56	102	60	112	52
CTCTTCTTCCCACGAG	ref_5055_reverse	10	9	9	7	7	13	11	5	12	12
TGCTTCAGCTCCCCGC	ref_5055_reverse	5	44	12	12	45	6	41	9	32	6
CGTGGGCGGATATTTA	ref_5055_reverse	35	36	41	25	41	31	34	17	46	35
GTTTAATATCGAAGCG	ref_5055_reverse	32	38	43	30	29	30	42	16	40	27
TGCCTTTTATGCTTTT	ref_5055_reverse	46	32	53	43	40	40	39	37	35	31
TCTTGTTGCACCGACA	ref_5055_reverse	14	26	13	16	28	32	25	19	22	24
TTAGTCTTCTACGTGT	ref_5055_reverse	10	12	6	5	15	3	11	9	9	11
TAGTTTATGGTATATG	ref_5055_reverse	10	10	6	4	7	13	12	7	10	11
CTTTGTAAGTGAGCCG	ref_5055_reverse	0	0	0	0	0	0	0	0	0	0
GCATAGAACCTGGGGA	alt_6083_new	4	8	3	3	5	9	16	7	10	3
CATTTTGTCTGCGCTT	alt_6083_new	13	8	9	15	14	3	19	8	20	5
CTCCTGCGTCAGTTGA	alt_6083_new	73	137	69	72	137	65	124	64	144	74
TTTCAGTTCGTGGTTA	alt_6083_new	6	4	11	6	11	4	11	4	7	4
AGCCGTTTTTACCCTC	alt_6083_new	0	0	0	0	0	0	0	0	0	0
GGTCCCATATTTACAG	alt_6083_new	57	93	50	43	101	49	71	38	75	48
GTGTAATGTGGAATCA	alt_6083_new	0	0	0	0	0	0	0	0	0	0
TGCTCGTCAGCACTGT	alt_6083_new	47	60	42	50	56	49	81	33	68	40
CCCCCGCGCTTCGCAG	alt_6083_new	0	0	0	0	0	0	0	0	0	0
GTGAAGTTGGTCTCCT	alt_6083_new	133	238	140	151	185	143	243	117	266	134
TGTAGTGACACTGAAA	alt_6083_new	31	39	41	24	46	25	42	27	40	24
TTGTAGATCTGAATGC	alt_6083_new	63	80	44	49	87	51	92	60	75	33
TTGTCACTCTCGCTCC	alt_6083_new	10	19	14	13	22	7	16	14	22	12
TATCTGGCTTGGATTC	alt_6083_new	0	0	0	0	0	0	0	0	0	0
TTTTCAAATGCTAGTT	alt_6083_new	19	26	35	19	38	22	24	26	42	16
CATTGACGTTTCCAAA	alt_6083_new	1	2	4	2	4	4	7	2	5	1
TTCTCTTGGACATTTT	alt_6083_new	0	0	0	0	0	0	0	0	0	0
GGCACATTTGATTTAA	alt_6083_new	10	9	15	10	16	9	12	7	11	10
CCGCGGGCCGACTAAC	alt_6083_new	5	18	5	6	27	6	17	6	27	7
CCCCTCGTACGGTAGC	alt_6083_new	15	21	14	10	36	14	29	20	23	11
TCTCACTGGTTCGCCA	alt_6083_new	21	29	18	14	31	20	29	12	28	15
TGGACGCTATATAGAG	alt_6083_new	36	32	32	35	37	26	32	19	47	24
GCCAACGGCAGCCTAG	alt_6083_new	12	15	13	10	13	9	18	10	20	5
TGCATTTGGGTGTATT	alt_6083_new	28	60	33	38	50	32	54	34	65	28
CGAGGTGACTCTTTTC	alt_6083_new	10	24	16	14	23	12	22	10	27	10
GAAACCTCCTCGGTAT	alt_6083_new	8	13	11	7	10	9	7	8	10	10
CTGTGGTATTTCGATC	alt_6083_new	0	0	0	0	0	0	0	0	0	0
TTTAGGAAAATCAGGT	alt_6083_new	39	44	43	38	50	37	51	37	71	27
CTTCGTAGACGGCCGG	alt_6083_new	14	26	20	3	27	14	31	12	28	14
CGGCTGGGCGCGCACT	alt_6083_new	0	0	0	0	0	0	0	0	0	0
TGTTCCTTCTACATTA	alt_6083_new	0	0	0	0	0	0	0	0	0	0
TTAGCCAAATTTCGGT	alt_6083_new	0	0	0	0	0	0	0	0	0	0
GCTTAGTTTACAGCGG	alt_6083_new	63	98	93	54	107	68	99	60	108	67
CCACCAGGAAAAAAGC	alt_6083_new	0	0	0	0	0	0	0	0	0	0
GAGAAGTTGGTCTCCT	alt_6083_new	0	0	0	0	0	0	0	0	0	0
TATTGCGGTACTCGTC	alt_6083_new	0	0	0	0	0	0	0	0	0	0
GTCCCGAAATGAGTTA	alt_6083_new	56	59	46	65	95	49	81	46	94	53
CCCTCTTAACAATACC	alt_6083_new	35	46	27	22	44	29	41	20	47	23
CTCAATCTAGGCACCT	alt_6083_new	0	0	0	0	0	0	0	0	0	0
CCTCTAAGGTGCGCTT	alt_6083_new	0	0	0	0	0	0	0	0	0	0
AACCGGCTATTAAGAT	alt_6083_new	38	62	37	45	89	29	73	25	90	41
CTGAAGTTTACTGATT	alt_6083_new	16	24	17	9	21	14	31	15	28	15
TTGATCCGTTGGGATC	alt_6083_new	4	12	5	5	7	6	11	3	8	7
CAAATTGAAATATTGG	alt_6083_new	15	34	28	34	30	23	37	21	27	13
TGTCCCCCATGTGAAA	alt_6083_new	0	0	0	0	0	0	0	0	0	0
ATGGGAGCATACTTCG	alt_6083_new	0	0	0	0	0	0	0	0	0	0
TGAATCTTGACTGTGT	alt_6083_new	31	97	58	58	73	45	69	47	73	50
ACTTATCGGTCAAGAA	alt_6083_new	0	0	0	0	0	0	0	0	0	0
AATGTCGATTGGTCAG	alt_6083_new	0	0	0	0	0	0	0	0	0	0
CATCTCTGGGGACGGC	alt_6083_new	17	17	20	22	24	14	17	15	21	16
GGGTGGGTTTCCCACA	alt_6083_new	57	99	66	71	78	66	91	50	86	47
AACTCCATCGTAATCA	alt_6083_new	8	10	6	4	8	5	9	4	7	4
TGTGTTGCTTTGCGCT	alt_6083_new	13	16	7	10	18	9	11	10	11	10
TTTATCTTTTCCAAGC	alt_6083_new	25	23	27	27	27	30	31	18	36	15
AACATCCCTCTACTTT	alt_6083_new	15	30	25	18	30	15	37	17	36	18
GCTCAATGAAGTTCCT	alt_6083_new	0	0	0	0	0	0	0	0	0	0
ATAATCCCGACACTCG	alt_6083_new	5	5	2	4	5	3	9	4	6	6
GACGCTATGTTAAGCA	alt_6083_new	11	11	15	8	8	9	10	7	8	3
TTCTGGCTGCTCGAAA	alt_6083_new	27	49	35	28	49	30	48	24	49	23
TATCCCATTAATTTAA	alt_6083_new	0	0	0	0	0	0	0	0	0	0
GACTTGGTTTTCTTCC	alt_6083_new	10	32	22	12	22	16	15	14	32	21
TAGCCTAATCACAGGA	alt_6083_new	10	14	20	13	19	14	19	10	28	13
TCATGGATTTTGATTC	ref_850_upstream	145	206	183	124	222	119	203	141	234	101
CGGCTCACTATGGCGC	ref_850_upstream	197	288	270	186	303	197	245	185	360	180
TCACTGAAGGGGGTGG	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGTAATTCGGAGC	ref_850_upstream	31	43	31	30	38	16	30	19	51	21
GCCCCTGACCCGTTAT	ref_850_upstream	7	21	14	15	31	20	25	11	18	13
AGCGCGGTACATTAAC	ref_850_upstream	21	35	16	19	34	11	19	12	30	19
AGCTGTCGTTTTTTGA	ref_850_upstream	7	13	4	2	7	2	5	6	12	2
AGCAGTTGCGCCTCGG	ref_850_upstream	125	209	174	153	198	137	226	132	240	154
TTAGACAGGGATAAGC	ref_850_upstream	44	92	65	48	69	63	71	48	85	40
GTGAGCCAGGGGGCAA	ref_850_upstream	15	26	27	18	41	27	38	15	39	13
GGAATGCTGACCAAGA	ref_850_upstream	52	65	44	51	87	58	78	56	90	46
ACTACCCTTTGAGGCT	ref_850_upstream	23	57	41	33	57	23	52	24	67	31
TGTGGACAAACACAGA	ref_850_upstream	1	4	6	3	3	13	14	4	10	5
CCTGCGGAACTATATA	ref_850_upstream	34	80	57	44	94	45	96	46	89	49
ATCATCATTTTCGCAG	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTATACAATTTTA	ref_850_upstream	13	29	17	17	31	15	32	19	22	17
AGGGCATTTTAAGCCC	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
CTTTAATTAGAATATT	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTCTCGGTTAACT	ref_850_upstream	3	6	6	5	9	5	8	8	2	3
TTTGCCTTAAAAATTA	ref_850_upstream	33	46	47	32	47	46	67	40	65	18
TTCTACTGATTCGGAA	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TCATACATAGTGGTTG	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
CGGTCTAGCATACGGA	ref_850_upstream	40	13	38	32	31	33	23	28	17	28
TGTAAGACCCTTGATC	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
CGATTGATTTTCGGAA	ref_850_upstream	18	18	12	13	30	17	22	14	21	15
ATTAGACAACGATCGG	ref_850_upstream	34	51	26	19	63	28	63	26	58	20
ACGTGTTCGGCCTTCG	ref_850_upstream	47	86	66	53	74	53	74	39	77	47
ATCTTGGAGTTGAAGG	ref_850_upstream	6	16	10	13	10	5	13	9	11	7
CGTTTCCCTACTCGTT	ref_850_upstream	6	9	6	1	11	2	3	7	11	5
GAGTTAGTACCCGCAC	ref_850_upstream	18	25	6	12	36	8	21	6	23	11
AATCCACGTCTACTTC	ref_850_upstream	13	20	18	8	31	10	26	10	21	11
ATTGAACAGCTGGAGT	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
CACAGAAAAACTTTCA	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
GATCCCGTTCTAGAAC	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGTCTGCGGACGA	ref_850_upstream	15	29	17	11	33	23	32	15	44	22
ATGAGCTCAAGCTAGG	ref_850_upstream	20	29	24	14	30	17	36	15	37	18
TGACTGCTGTGTTTGC	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
GTCGCTCAGTCGATCT	ref_850_upstream	4	8	12	7	10	10	10	8	7	7
TTCGTACTTAGCGCTT	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCCCGACCTAGC	ref_850_upstream	76	162	105	86	168	75	183	70	170	69
CGGTTGAGTCACCATT	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
ACAATAAACGTCACAA	ref_850_upstream	13	24	19	17	26	11	21	13	33	7
ATCAGTAAAGATACCG	ref_850_upstream	34	60	47	27	40	28	45	26	64	26
GGGCGCACAAGTGCAT	ref_850_upstream	16	31	22	15	20	15	32	16	25	11
CATTTAGGCTCGGTGG	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TCGAATACACCACGCC	ref_850_upstream	76	135	72	65	128	87	118	65	141	62
CCGCCGGTTTCTTTTG	ref_850_upstream	47	63	54	54	73	49	72	42	71	46
CAGTTTACCTTATCTG	ref_850_upstream	5	17	6	3	24	6	17	7	24	11
CCCTGGCTGAATCACG	ref_850_upstream	14	29	20	15	20	27	28	15	38	20
AGCTCCTCCGTCTCGT	ref_850_upstream	0	9	0	0	6	0	5	2	9	0
GGTTCCTTCTTATATC	ref_850_upstream	5	9	6	10	11	10	10	6	20	7
CGGTTTTCTAAAGGCG	ref_850_upstream	120	183	175	132	195	150	181	144	188	98
GCTAAGCACCGCCGAG	ref_850_upstream	48	60	42	31	65	28	56	24	76	38
AATCCGAACAAGTTAT	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TGTCCCTACAGGGGGT	ref_850_upstream	10	16	10	7	18	7	17	5	19	9
CTTGGGCTCTTCTTCA	ref_850_upstream	1	0	0	1	0	2	2	0	0	1
AGCACGTATCGAGAGG	ref_850_upstream	13	14	21	11	26	10	17	10	9	16
AGCTGTAGCGGAGTAA	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCCTTGCTCTGGC	ref_850_upstream	13	70	20	19	76	13	79	17	83	17
CTTGATGAACTTTTCT	ref_850_upstream	21	24	22	10	26	17	16	14	25	11
TAGGCGCTTCCCGTGC	ref_850_upstream	2	10	8	10	12	5	7	3	15	4
GCTTCTACCTTGGCAC	ref_850_upstream	8	7	5	4	7	6	4	4	3	5
TTCATTCTGGCCTGTT	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TTCCACCTCTGTTGCG	ref_850_upstream	20	25	17	19	20	13	32	11	41	18
CAGAGCTCGTCAAGGG	ref_850_upstream	14	21	15	6	27	9	17	11	16	11
CAAATTCTCTCTTATT	ref_850_upstream	51	53	49	40	42	46	57	41	68	28
GGCATTTGGTGCCGGT	ref_850_upstream	18	24	9	13	25	14	20	15	23	11
AAGTCTCGATCACTTT	ref_850_upstream	18	26	18	15	29	9	45	12	21	13
TCGTTCCCGCCCTAGC	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
GACACGCGCCCAATGT	ref_850_upstream	117	119	115	93	166	104	129	85	151	89
CGCGTTTTGTTAGGCA	ref_850_upstream	6	15	12	11	17	6	23	8	29	10
GTCTCCAGTATCGTAC	ref_850_upstream	2	3	0	3	3	1	2	1	3	3
TGGTCATGCTGGAATT	ref_850_upstream	38	58	41	33	61	39	74	41	63	31
TAAGATAGCTTGTCTA	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCAATAACCGACT	ref_850_upstream	9	34	19	17	31	4	37	17	25	13
TATTCCGAGAGGAGTA	ref_850_upstream	138	243	192	169	276	138	223	138	251	141
CCGCGTGATAGAACTC	ref_850_upstream	118	205	135	113	195	106	205	132	241	85
AAAGCATTTCGCGGAT	ref_850_upstream	41	53	52	53	69	29	78	47	50	32
GAGCAGCATACCCTTC	ref_850_upstream	26	37	32	21	32	14	39	19	37	15
AGCCCTTTCCGCCTTA	ref_850_upstream	1	14	4	0	21	2	23	4	14	2
AACTGGTTACTAATTT	ref_850_upstream	9	23	32	27	23	18	21	9	18	12
ATCCCTTCGCTAGGTT	ref_850_upstream	27	59	19	24	54	34	49	26	68	22
GTGTTCGTTTTAAATG	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTCTATCTCTATC	ref_850_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGTAACTCTCGTG	ref_850_upstream	5	5	13	10	13	3	15	4	10	0
TTCAGGGGATTTAGTT	ref_850_upstream	46	105	41	46	95	40	105	38	102	45
TACCCGCTTTACAATA	ref_850_upstream	7	15	16	5	22	5	17	9	18	8
TATCCGTGAATCACCC	ref_850_upstream	13	17	10	10	12	6	11	5	14	16
CGCGACGAGATTATAA	ref_850_upstream	18	35	21	27	45	13	39	14	39	14
GACCCCCGTTGAAGCA	ref_850_upstream	174	218	190	165	245	166	231	154	257	169
TAGGGGGTTTTTACGG	ref_850_upstream	23	43	29	32	30	29	36	13	42	18
AGCTCTTATTACTCTT	alt_110_fdr	5	17	9	12	16	9	15	15	24	6
TGTGGTTATTGGGGTA	alt_110_fdr	7	14	5	5	5	6	17	5	11	5
CCTCCTGACACTCGCC	alt_110_fdr	8	8	8	4	5	4	10	4	6	4
GCCCCCGATTTTCGCG	alt_110_fdr	14	28	23	15	27	22	40	10	25	7
CTGCGGTCAACACTAC	alt_110_fdr	67	144	87	67	156	53	168	62	166	71
CTAGACGTCTCGGTCA	alt_110_fdr	14	21	14	4	20	11	21	11	23	9
TTCCGCGCATCCATGT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
TACAAGATTGTGGATA	alt_110_fdr	16	16	9	22	27	16	20	9	21	14
TGGATCCCGCCTTCAT	alt_110_fdr	160	262	220	171	250	149	259	164	312	147
TGCTCGCTTCTGTTCA	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
ATACGATCGAGCGGGG	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
AGCTGGCAGGTATTGC	alt_110_fdr	60	86	72	43	82	45	93	50	79	35
GCGCCATAACGGGTGG	alt_110_fdr	2	18	18	7	32	21	27	12	21	11
AATTTTATTAGGCGCG	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGTTTTCGGCGTA	alt_110_fdr	37	87	33	21	110	29	75	33	94	24
AGTAAGCATGCGAGGT	alt_110_fdr	18	34	20	14	26	20	30	10	24	13
GGCAGAACACGCATGT	alt_110_fdr	25	42	39	23	32	24	35	24	52	29
ATCTCCAACGCGCGGT	alt_110_fdr	20	31	29	26	33	24	50	13	42	18
ATGTGGCCTTTAAACC	alt_110_fdr	49	66	46	42	54	34	58	47	84	27
GTAGGTCTTCTTTTAT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCACTGTTCTCTC	alt_110_fdr	8	14	12	7	17	5	11	6	17	5
TTCACCGACGGTAGAT	alt_110_fdr	0	5	3	4	3	0	2	1	2	2
GAACAGAGATTTGGAT	alt_110_fdr	6	5	6	10	9	6	8	5	9	5
CGAAGTTCCCTGGGGC	alt_110_fdr	10	17	9	2	8	3	13	3	14	10
TATCTGGCTTCATGCG	alt_110_fdr	18	23	21	19	31	19	24	20	33	15
CCCAAGGCTCCACCCC	alt_110_fdr	9	8	12	20	22	9	23	15	18	11
GGGGCGTGTTCGGTAT	alt_110_fdr	46	70	44	41	57	27	61	52	70	35
AGGGTCCAGTAGGAAT	alt_110_fdr	16	30	20	22	26	23	21	13	30	18
ATAGGAGCGCTTTTGA	alt_110_fdr	31	81	40	37	61	26	52	39	65	27
ACGCCGGGTAAGTCTT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CACAAGTTTGGGTACA	alt_110_fdr	27	38	27	21	42	18	47	21	44	17
TGTGGAGATCTACACC	alt_110_fdr	11	17	18	8	17	7	21	12	35	8
CCTGGGCGTTTTATCA	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCCGACGTTTGTG	alt_110_fdr	4	5	11	11	12	6	19	8	11	7
GAGTATGCACGCGATA	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
GAATTTCGATCTCAGC	alt_110_fdr	8	14	8	12	12	8	6	3	19	6
TCTTATTCCTCATCAC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CTAGAGAGTCCACTCC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAATCCGTCCGGT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
GAATGAACCTGTGAGT	alt_110_fdr	5	7	4	5	8	2	18	4	9	3
CTTCGGGAGTAAGGAT	alt_110_fdr	12	18	16	11	18	8	29	8	16	11
TAATCTAATCATGTTG	alt_110_fdr	33	33	39	35	46	35	42	26	44	25
GGTTATGTAGGGCTCA	alt_110_fdr	0	2	2	0	0	1	2	3	7	0
ATGGCCGGGAAGCATT	alt_110_fdr	3	1	10	6	3	4	3	5	5	4
CTTATTTTGTTACGGA	alt_110_fdr	16	12	10	15	29	11	26	4	26	8
TAGTTTTTAGGTTTAT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CATCTGATTCCCTCTT	alt_110_fdr	220	387	283	269	329	259	355	258	406	215
CATCTGATTCCTTCTT	alt_110_fdr	0	0	1	0	0	0	0	1	0	0
CTCATGAAGAGCATTA	alt_110_fdr	39	91	54	60	97	52	96	43	92	40
TATACTGGGTATTATT	alt_110_fdr	1	3	0	0	1	0	1	2	1	1
AAGCCCACGTCGGGAA	alt_110_fdr	3	4	0	6	4	1	7	2	1	1
CCTCACGACATGTGAC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTGAGGTGGTAGT	alt_110_fdr	3	7	8	4	5	1	3	4	6	0
GATCGAAAGTATTGTT	alt_110_fdr	14	7	4	9	18	7	13	6	19	12
ATCGATGTTCAGGGAT	alt_110_fdr	31	48	38	20	42	25	48	29	55	16
TCCAATGATTGATTTT	alt_110_fdr	2	1	2	5	8	1	6	2	2	7
TACAGTTTACGGCTGC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
ACATTAGCCTAGGACT	alt_110_fdr	70	85	79	75	119	69	95	67	102	49
TATAGTATTTAGGGTC	alt_110_fdr	16	24	9	21	18	11	20	13	29	22
CGTTCATGATTAACGG	alt_110_fdr	17	56	24	18	53	17	47	28	49	26
CAGATGGGTCGCTTTT	alt_110_fdr	9	11	4	6	10	12	10	6	24	11
TCGCGGGCTATTCCTT	alt_110_fdr	7	9	13	6	12	7	15	9	13	4
CAGGAATTAGCCCGCA	alt_110_fdr	21	42	52	32	58	36	65	32	48	25
GCTATTTCCCTTTTGC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTGGATAAATCTC	alt_110_fdr	33	64	48	44	57	34	67	30	71	41
GAGGTGTTGAGCTTGT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAGGTATCTCGCC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
GATGGATCTTCATTTT	alt_110_fdr	4	1	6	2	4	6	3	7	10	3
TTCCTTATTGGCCCAC	alt_110_fdr	4	14	5	3	12	7	12	4	12	3
ACGTCTGGGTATGTTG	alt_110_fdr	21	6	21	10	10	9	6	18	13	18
AAAGCGAGTAGGTGAG	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CTCACGGATTCGGGAG	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGCTTTAGTTCTG	alt_110_fdr	4	8	9	11	8	5	12	6	19	3
AAGAAATACGGGGGCT	alt_110_fdr	24	20	31	17	20	18	31	12	34	11
GACATGATATAAAACT	alt_110_fdr	7	9	9	5	13	2	7	5	6	6
GGGTGGCCTAGCGCGC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
TACCGTACCACTGGTG	alt_110_fdr	7	9	13	10	18	11	26	6	23	5
CGTTAATGATATACGT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
GTCCGTGGGATTAGCG	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CAACTGATTCCCTCTT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGTTGAGCTACGC	alt_110_fdr	2	4	3	0	4	7	1	2	2	2
GGCACGCTTAGAGCCG	alt_110_fdr	21	26	10	18	35	19	35	17	23	13
TGCCACCGTTCTAAAT	alt_110_fdr	6	7	6	6	5	5	10	5	4	7
TCAACTCCTTTGTTGT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTTAGACGTTCCC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
ATACTTGTCGGAGTAA	alt_110_fdr	11	10	7	8	3	1	9	7	7	7
TGTCGAACCGCTAGTA	alt_110_fdr	21	35	20	25	28	20	49	25	41	16
TACATCTCAGAAATGT	alt_110_fdr	53	81	57	68	84	33	74	44	64	56
TAAGTGAATAGCAGCC	alt_110_fdr	21	25	20	19	20	17	34	16	27	14
GCGTATTATTTTTTCA	alt_110_fdr	45	53	45	46	51	38	64	28	67	35
TCATTGGCATGTGAGC	alt_110_fdr	13	37	14	18	38	14	38	13	35	14
TGGATGGCGGCCTCCG	alt_110_fdr	12	17	17	10	10	9	20	17	15	4
TGTTTAGTATCTCCCC	alt_110_fdr	2	8	3	0	7	0	4	0	15	0
AGTTTCTGAACGCTTT	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CTTTATTGACTTCTGT	alt_110_fdr	0	0	0	0	0	0	0	1	0	0
CCGTGTTTCATGGTGT	alt_110_fdr	38	65	34	31	61	31	65	21	70	32
GCCTAACCCTGCTGCT	alt_110_fdr	4	32	8	11	31	4	22	6	38	7
TCCGTCAAGTAGGCTT	alt_110_fdr	0	2	1	0	3	0	3	1	1	0
TCTCTCTCTGTAGTCT	alt_110_fdr	3	3	2	2	6	0	2	6	4	2
TTGATTTTAATTTTAC	alt_110_fdr	40	74	43	41	67	27	53	26	64	46
CGCCCGTATGCGGAAA	alt_110_fdr	7	7	7	3	8	2	7	3	9	2
AGTTCATACTTGTGCC	alt_110_fdr	0	0	0	0	0	0	0	0	0	0
CTAACGTCGGTAGAAG	ref_4037_upstream	18	42	24	21	19	16	36	24	35	23
GTAAACATATGTGTTG	ref_4037_upstream	19	28	20	16	21	22	19	18	35	27
GTGATTGGTCTTTATT	ref_4037_upstream	47	56	50	46	63	59	68	49	82	40
AGACTCGTGCTATCGT	ref_4037_upstream	4	4	12	5	12	10	9	7	11	8
TTGCCCGCCTCGACGT	ref_4037_upstream	17	11	7	12	15	12	15	10	15	11
TCGCCCATTCCTGATA	ref_4037_upstream	21	44	23	23	45	33	45	30	41	22
CAGCGAGGTGGTTTGC	ref_4037_upstream	9	13	13	11	20	10	22	21	25	14
AATTTGTCAGGTCTTA	ref_4037_upstream	4	2	3	0	5	2	1	3	3	4
AATGCGAGTTGGCTTC	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGTCAAAGGGCA	ref_4037_upstream	24	22	22	23	19	14	25	20	19	17
TTCTTGAGGTCGACCG	ref_4037_upstream	11	18	14	18	27	20	18	12	24	15
TAGAGTGCAATGCGAT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
ACCAAAGATGCATCAC	ref_4037_upstream	22	43	42	42	49	31	49	30	43	36
AACCTTATGATCCCTT	ref_4037_upstream	13	21	12	13	17	17	9	13	17	15
CCAGGGGCATTACTTC	ref_4037_upstream	8	12	7	8	20	8	19	7	21	7
TTAGCGGACCTCGATT	ref_4037_upstream	37	51	49	31	48	37	50	38	41	31
ATTATTTGGACCTGGA	ref_4037_upstream	48	72	75	62	74	52	77	54	103	50
GCGTCGTCTGTATACT	ref_4037_upstream	13	16	19	8	22	14	14	11	17	13
CATAAGGCCTACCTAC	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
TACTAGTGGGGTCCGG	ref_4037_upstream	49	47	46	44	51	36	43	32	60	42
GCGTATCATGTCTGCA	ref_4037_upstream	11	14	18	5	21	10	15	13	14	14
CCAGCAAAATGACATA	ref_4037_upstream	15	68	19	22	57	21	72	26	66	21
CTTTCGCTCATTGTCC	ref_4037_upstream	17	26	31	26	34	18	26	28	26	26
GCTCGGACACGCCGTG	ref_4037_upstream	38	48	50	40	44	39	51	28	54	27
GTCGTCTCTCTCTGGA	ref_4037_upstream	7	11	6	4	4	10	6	3	14	5
ACACTTTGTCTAGTCG	ref_4037_upstream	11	7	13	9	7	7	12	9	14	9
CTATATCTTTAGCGGG	ref_4037_upstream	89	76	95	97	123	84	115	81	124	82
ACTTATGCCAAATGTG	ref_4037_upstream	20	38	38	25	36	14	55	29	37	29
GTAGCATCTATACACT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTTTCGAATTCCT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTAGTCATAAATC	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
CGGCACCGACCTAGGG	ref_4037_upstream	1	2	4	2	1	5	4	4	7	5
TGTTGCTATGGTTGGA	ref_4037_upstream	16	23	18	21	21	15	18	11	17	26
GCTAACTAACGGTCGG	ref_4037_upstream	30	40	42	30	50	27	46	29	49	31
TTCGGTCCAGTTTGGT	ref_4037_upstream	10	12	10	10	15	9	15	9	10	12
TTCCATCTTATTTCTG	ref_4037_upstream	8	9	1	6	8	15	15	12	14	7
AGGCGGGGCCTGTATC	ref_4037_upstream	7	8	3	6	9	6	6	3	7	8
AGGGAGGCCGCGTCTT	ref_4037_upstream	9	7	8	8	12	5	12	10	15	9
TATTTTCGGTCAGTGT	ref_4037_upstream	37	47	53	37	65	45	47	43	72	41
TCACCGGTAATTGACA	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTTGACTTCACCT	ref_4037_upstream	8	8	6	2	3	0	6	2	4	1
AGGCCTATATAATGCA	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGTAATACCCGTG	ref_4037_upstream	18	21	27	12	27	12	25	26	30	16
TTCCTGTCGCCTGGGT	ref_4037_upstream	124	114	141	113	146	105	162	110	175	117
ATGCCATGGTTTATCG	ref_4037_upstream	44	58	61	32	72	46	61	46	60	47
ACTTGTACAAGTCCTA	ref_4037_upstream	21	13	21	16	23	14	16	21	27	11
GAAGGAGGGAAATGCC	ref_4037_upstream	31	60	45	37	45	36	34	30	45	40
TGTCAAGTATATGACC	ref_4037_upstream	0	4	4	3	3	0	12	6	11	5
CTAGTACGAGCCGTGC	ref_4037_upstream	31	60	35	38	63	32	62	45	64	32
ATATCCCGGATCTGAC	ref_4037_upstream	45	75	52	36	72	45	78	36	80	31
TGACTACTACGCCGCT	ref_4037_upstream	30	66	48	29	46	42	54	32	53	30
CAACGCCATGAGCGTT	ref_4037_upstream	80	72	105	65	86	64	82	64	79	70
CTCCGGTCCGCCATTT	ref_4037_upstream	60	85	79	66	111	87	89	59	123	67
TCCGGTATGGGGCTCC	ref_4037_upstream	4	1	0	3	1	2	3	2	6	0
CGGTTTTCTCATGGAT	ref_4037_upstream	0	0	2	2	5	6	1	2	0	2
TAAGGATCTTTTGTTG	ref_4037_upstream	93	121	117	91	119	94	108	110	125	95
ATTAGATTGCGGACTG	ref_4037_upstream	35	58	42	31	65	38	53	32	63	35
GCACGTTGTGGTACCC	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
TATCTGACACTGCAGT	ref_4037_upstream	58	51	42	41	70	36	71	41	74	35
CCAAGAAGTTGTGAGC	ref_4037_upstream	74	100	91	51	75	36	92	52	114	61
TCGTTTTATGAAGAGC	ref_4037_upstream	2	8	0	4	0	2	3	0	5	3
CGAGCGGTCACGCCTA	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
AGGGCTTGCCCAGACA	ref_4037_upstream	12	19	11	9	20	17	7	7	16	16
TTGCGGGGGATGGTAT	ref_4037_upstream	50	37	45	49	40	37	45	47	45	31
GGGTCAGGGCTTCATA	ref_4037_upstream	20	11	26	18	28	18	34	21	30	18
TAAAGCGTGTTAGAGC	ref_4037_upstream	28	38	32	20	40	27	39	25	49	16
CTTTGTCTTGTTCTGG	ref_4037_upstream	21	13	29	19	23	19	27	10	21	19
AGCCTTTGATCTCGGG	ref_4037_upstream	28	37	37	26	34	22	44	25	41	22
AATGTTTTAAATTGGC	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
GCCTTTGTTCGGTTGA	ref_4037_upstream	8	4	8	6	4	1	10	7	14	1
CTAGTGACTATTAGAC	ref_4037_upstream	7	8	9	6	10	5	14	9	9	4
ACGTACGTTTTACTAA	ref_4037_upstream	12	22	21	10	10	14	26	13	14	11
AAGGCATACTTGGCCC	ref_4037_upstream	44	63	69	41	64	40	68	41	59	34
TTGCGGGTCGATCTGT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
AATCTGCAAGGCGCGC	ref_4037_upstream	13	15	15	16	8	11	7	13	8	6
TAGAAAATATTCCGAC	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
ATACCAATCGAAGTAT	ref_4037_upstream	7	16	5	6	10	8	20	11	16	10
GTGACGCCTCGAGTGG	ref_4037_upstream	34	46	42	40	42	46	43	42	46	35
CGGTAGCTTAGGCACA	ref_4037_upstream	45	55	42	41	53	38	71	46	48	32
ATTCGGACTATCTGCG	ref_4037_upstream	8	33	9	4	41	14	65	12	46	10
TGAATTAACGGTACGT	ref_4037_upstream	32	38	35	35	23	50	46	21	48	30
ATATCGTTTACTATTT	ref_4037_upstream	55	74	64	63	70	54	92	59	79	54
CTGCTTCATTAAAACG	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
GACCAAAAAGGCTGGG	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTCCATATCCAGC	ref_4037_upstream	27	32	33	28	38	20	34	30	29	50
CCGCTTCGAGTACGGC	ref_4037_upstream	4	3	3	6	4	4	7	4	10	6
TTAAACGTCTAATGGT	ref_4037_upstream	26	40	35	20	55	32	29	25	53	32
ATTTTGCTTTTGAATT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
TGCGGGGTCGGCCAAC	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
CGGTGATCCTTCGTAT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
CTTTACTTCAAGATAC	ref_4037_upstream	11	24	12	6	18	9	15	9	19	15
TTCTTCGAGGAGTTCT	ref_4037_upstream	8	18	24	13	18	7	20	11	16	13
GTTGCCATCGGCATGC	ref_4037_upstream	0	5	4	2	5	4	4	2	8	5
CTGTCCTCAAATGGGG	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCACAAGATCGCA	ref_4037_upstream	31	48	42	36	45	30	48	41	37	28
ATATGTGGTATCTGCG	ref_4037_upstream	135	151	144	118	165	115	160	106	170	115
CAGTGATGACCGCGTG	ref_4037_upstream	11	3	4	6	6	5	7	6	9	3
CGTCGTTCCTCTCCAC	ref_4037_upstream	2	16	3	7	13	6	21	7	18	2
TATTTTCAGCGTGTGG	ref_4037_upstream	43	57	59	54	58	54	55	29	47	37
AATGTGCTTACTATGA	ref_4037_upstream	43	73	52	37	83	46	84	29	101	50
TGATTGGTGTTATGGC	ref_4037_upstream	29	34	35	35	30	20	38	38	36	26
TTTCACCGAGTGTACT	ref_4037_upstream	117	137	130	103	144	116	141	106	172	88
CCCAGTGTATGTACCT	ref_4037_upstream	50	102	54	40	95	65	89	47	118	56
CTCAGGCATAATAATT	ref_4037_upstream	46	38	39	35	41	29	57	38	48	28
ACCGGCCTTTGTTATT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
GCCGTTGTGTCATATA	ref_4037_upstream	20	36	23	21	37	29	39	19	34	19
CGTGTCATTACTCTCG	ref_4037_upstream	11	18	9	9	15	17	13	9	15	7
TGATCACTGGTACCGA	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
ATCGCTCCTAATAACA	ref_4037_upstream	37	44	35	41	54	39	47	30	44	35
CGCTCGCGTCCCTCCG	ref_4037_upstream	30	65	53	38	55	49	71	30	55	30
ACTACCACCTCCTATA	ref_4037_upstream	159	217	187	163	255	149	251	152	209	155
TTCCCCCTGAGTGTCC	ref_4037_upstream	53	78	50	57	111	55	101	40	79	62
CTATCTTTTCCTACGA	ref_4037_upstream	31	58	35	44	44	34	65	42	64	34
CAATTTCCATGTGTGC	ref_4037_upstream	93	119	116	97	142	92	132	88	108	96
GATATCGACATTATAA	ref_4037_upstream	5	6	9	7	6	6	6	7	8	4
TGAGCAATGTCTTTTA	ref_4037_upstream	16	16	9	19	14	10	13	15	13	21
GAGTCCACATGAGGCC	ref_4037_upstream	11	10	16	5	11	9	11	12	12	13
CCTGTATCGCGCGTTT	ref_4037_upstream	38	51	56	39	60	55	51	42	69	35
GCCTAGGCCAGCTATG	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
GTCAAGAATTTGGACC	ref_4037_upstream	34	54	37	43	33	32	52	37	45	32
AGGTCCTTTATCGGGC	ref_4037_upstream	26	27	31	24	34	15	35	23	30	15
GGCACACGGTAACAGA	ref_4037_upstream	45	77	67	77	66	64	95	64	93	50
CAGGTGCCCGCAACGT	ref_4037_upstream	0	0	0	0	0	0	0	0	0	0
GAACCCTATGATAAAA	ref_4037_upstream	19	27	21	20	30	18	28	20	41	20
CTGTGCACTATCTCAC	ref_4037_upstream	25	40	21	17	55	24	47	18	42	33
ACATATATGTCTCATC	ref_4037_upstream	15	42	42	27	35	23	30	26	47	19
TTGTGGCTAGGGTCGA	ref_4037_upstream	52	74	82	75	87	68	92	48	97	58
TTTGTGATTCCAAATA	ref_1635_missing	22	20	12	8	19	18	18	17	31	15
GGGAACCGACGAAAAG	ref_1635_missing	44	48	37	29	49	31	46	27	47	29
CCAGGTATGGTGTTAT	ref_1635_missing	14	20	25	16	18	12	30	7	30	16
TTCATCACCTATCGAG	ref_1635_missing	8	13	10	9	13	13	9	9	13	4
GTTCAATAGTTTGCGT	ref_1635_missing	42	28	30	29	33	39	38	23	51	28
GATCAGACATTCATTC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GAATTGACTCAGGGTC	ref_1635_missing	359	479	410	372	509	357	485	317	530	317
ACTGGGAAATGCGATC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GTTTAATGGTAACTTC	ref_1635_missing	59	112	87	81	92	63	125	81	94	81
CTTACGTATTCTTTTG	ref_1635_missing	4	7	2	7	18	8	16	5	14	4
AGCGGATGGCTTTCGG	ref_1635_missing	14	19	23	17	22	12	17	10	12	11
TTAGCCTATCCCGACG	ref_1635_missing	23	57	39	26	55	28	64	28	58	23
ATCCATCGCTTGATCC	ref_1635_missing	25	37	21	21	31	21	35	13	33	13
CTTTTGTGTGATCCCT	ref_1635_missing	18	25	25	15	18	23	18	15	26	11
CCTGGTTCCTAAGGAT	ref_1635_missing	7	3	6	3	3	12	4	3	7	7
ATTTGAAAGGGTGAAT	ref_1635_missing	21	36	30	22	37	20	24	23	26	23
TGTCGAGATCCCCCGG	ref_1635_missing	3	2	10	10	3	8	7	11	7	4
TTGCCATGTTGTCCCA	ref_1635_missing	10	19	9	7	8	10	13	6	13	7
CATTAGGGGCTATTCA	ref_1635_missing	8	7	4	11	19	11	19	8	14	9
GCCAGGCTTCTGGCAT	ref_1635_missing	6	17	12	9	22	13	14	12	24	15
GGCGGCTAATGTAACC	ref_1635_missing	32	35	40	36	75	48	55	36	46	34
CCTTAATTTCTAGTCG	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
ACGCTGTGCTCAGCAT	ref_1635_missing	11	7	9	8	16	11	19	11	12	5
AGCTTTGCGATGATAT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CCACCGAATGAGGTCC	ref_1635_missing	119	223	157	115	246	103	243	118	259	115
TATTACAGCTTCTGCT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GTCAGCCTTTCCTCGT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
ATGCTAAGGCCGTACC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTTGTCACGCGA	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
TAGTCTAAGCCCCGGC	ref_1635_missing	11	17	23	16	28	14	24	15	22	5
CGTGCTGCCCGAGTGC	ref_1635_missing	2	1	4	3	3	2	8	3	1	0
TCTCTTCGCATTTCGT	ref_1635_missing	206	303	215	187	307	201	285	151	324	172
GCTCGCCTCGCGGCAG	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CACTAGGCAGCCAGTT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GTTAACATGCGAGCCG	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
ACAGTTAAGGCCGTTC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
TCTTGCAAAGTCTTTA	ref_1635_missing	7	13	10	6	13	12	10	8	12	8
AGATTATGTGGTTCGT	ref_1635_missing	29	38	31	19	30	19	46	20	42	21
CTCCCTCCTCACCATC	ref_1635_missing	9	16	6	9	22	4	29	4	18	6
TGCCTACCTATATCAA	ref_1635_missing	4	9	4	3	3	5	9	2	4	1
GCGTTAGTTGACTATC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
AGGTTTCATATGAGTT	ref_1635_missing	7	20	6	5	10	14	9	11	13	7
CCTTGCTGTTTTTCTT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GCTACGGACTTCCGCT	ref_1635_missing	7	9	4	9	5	2	8	7	12	7
GAACGTAGAGCATGTA	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
TATTGCGAGCCAACAG	ref_1635_missing	4	10	2	1	7	6	8	4	10	4
CCTAAATGGTAAACAT	ref_1635_missing	6	4	8	11	5	2	5	3	5	7
CTTTCAAGGTCCCGGC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CAGGTTTCAACGCCCG	ref_1635_missing	15	19	17	20	16	16	12	10	18	17
ACTGGCTCTGTTCCGT	ref_1635_missing	28	38	32	22	33	17	33	29	37	23
ATAGCATCCATGTAAC	ref_1635_missing	30	44	41	28	51	28	61	32	47	27
CTGTTCTTTGCGGGTG	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CCGTCCAAACCATAAG	ref_1635_missing	46	71	59	69	67	37	105	42	99	29
GATATGTTATCAGTTT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GACATTTTGTTTATGG	ref_1635_missing	29	30	31	31	28	26	35	22	35	34
GTAACGATGGTCGGCA	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
TCAGTGTGTTCTCGGG	ref_1635_missing	13	32	23	17	25	12	27	20	33	21
GAGATTTCTCAGGGGG	ref_1635_missing	50	50	69	59	65	56	62	54	66	40
ACAATGGATTCTGGCA	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CGTTCTAACAGCGAGT	ref_1635_missing	32	58	32	26	42	21	33	30	42	30
CGCGCTCGATCACTAT	ref_1635_missing	41	33	47	27	56	30	46	30	59	27
GAGCGGAGTTGGAAGA	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CAACAGAGCGGCAATT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CCTGAGTCCTATCAGC	ref_1635_missing	7	15	14	14	21	12	21	18	18	7
CTGATCCATACGGTCG	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CTGTAGGATAGGACCG	ref_1635_missing	24	30	25	20	24	26	34	24	32	26
ACATCACCTATGGCTA	ref_1635_missing	27	54	51	34	49	36	49	37	50	34
AGGCGGAACTCGTACC	ref_1635_missing	14	17	18	10	27	26	20	10	36	21
GTTGCGACCTTAAACG	ref_1635_missing	15	18	6	18	22	13	14	8	11	15
AGGATGCGTTAAGGTC	ref_1635_missing	14	21	8	11	15	13	18	11	21	15
CACTAAACCGCTGTAC	ref_1635_missing	18	28	25	24	22	23	43	23	49	22
GGTAAAGGCGGTTCCT	ref_1635_missing	19	19	16	15	25	14	22	14	31	14
ATATGTGTACGTACCT	ref_1635_missing	34	101	30	19	110	21	126	23	127	26
TTTTGGTTAAGATTAT	ref_1635_missing	29	49	44	40	53	32	54	33	61	24
CGATAAGGGTACATTT	ref_1635_missing	16	18	13	11	13	21	25	20	14	13
CCGACTTTGCCGAACT	ref_1635_missing	15	19	20	12	25	7	25	10	18	7
AGCCTTTTGTCTTGCA	ref_1635_missing	8	21	8	7	9	2	19	8	13	4
TGGGCGGCCCCCTCAC	ref_1635_missing	91	72	89	65	83	65	92	59	101	43
TTCAGTCACTACATAC	ref_1635_missing	3	29	16	11	23	8	26	10	29	8
GTCCACCGCAGTTTTT	ref_1635_missing	2	7	5	2	8	2	13	3	5	8
AACATATTTTGCTAGG	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GACCCACCCTCGTTCC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GGGAGGCTCTTCTTGT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CGTTAGTGGCCTGCGT	ref_1635_missing	13	16	12	9	13	8	18	11	10	6
CTACTTCAGCTCATGG	ref_1635_missing	0	5	0	0	4	0	5	1	2	0
ATGATAGGCGTGATCG	ref_1635_missing	22	44	40	26	38	32	35	30	32	27
TTCGGATATTGCTTTT	ref_1635_missing	27	34	20	32	53	28	33	24	35	15
CGCGATCCATTCTATA	ref_1635_missing	12	5	1	6	5	2	2	6	8	6
AATCAGGATAGCTTCG	ref_1635_missing	31	43	41	25	49	30	52	29	62	31
CCCTTCTCAATCTGAG	ref_1635_missing	19	36	20	13	26	10	35	19	31	18
CGCACCCCTATCAAAA	ref_1635_missing	66	140	100	81	142	66	150	82	135	78
ATCCCGTGCTGAGACT	ref_1635_missing	7	17	11	9	9	7	6	2	11	7
ATTTAAGTCTCACGCG	ref_1635_missing	16	30	19	16	21	30	53	18	23	26
CCATTTGTCTGGATAG	ref_1635_missing	14	23	15	8	29	14	10	9	28	9
GCCCATCATATCCTCC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
ATGGTGTCGAGCTGTC	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
ATGTCTGTGGCAAAAT	ref_1635_missing	9	8	6	7	11	2	4	7	17	7
CCTCTCTGATCGTTAG	ref_1635_missing	17	14	12	5	20	12	14	7	25	10
AGGGTGTATTGTTTAT	ref_1635_missing	1	5	6	4	6	2	3	4	6	6
TCAAGCTCTGCCCTCT	ref_1635_missing	19	30	33	25	31	20	44	30	29	32
GCCGGCACCACTTGAC	ref_1635_missing	7	13	7	3	7	2	6	5	8	4
TCATGGTAAGCGTTCG	ref_1635_missing	6	3	7	5	7	3	5	6	5	1
GGATACTCAGGTGGCG	ref_1635_missing	199	255	223	179	247	230	261	220	297	207
CTAGCGGGGAAGTCGT	ref_1635_missing	19	34	28	17	35	17	61	8	34	25
GCCTGCTCCGAGATTC	ref_1635_missing	3	5	6	3	5	7	9	2	5	3
TGTATTTGACACTACT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
GAATCATGAGTCTGAA	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
TAAATCTAGAACAGTT	ref_1635_missing	0	0	0	0	0	0	0	0	0	0
CCTCTGAATTTCCTAC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ATTCTTTATCTTTGTA	ref_1943_missing	4	5	8	10	7	7	9	10	10	3
TCTGATACCTCCTGTA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTTCTCGTGCTGCGCG	ref_1943_missing	13	35	20	15	34	25	41	23	36	13
GCATTCAAGGATGGCG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TTTATGCTAATTCTGG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGACAGAGTTGGCAGA	ref_1943_missing	16	30	12	14	39	23	23	21	30	11
TCATCTTGTGATCAGT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ATAGTCAGTCTTGGAG	ref_1943_missing	3	5	5	3	7	2	10	7	8	6
TCACCATAAAAGGTGC	ref_1943_missing	1	0	0	0	0	0	0	0	0	0
TGGTCCGTGCACGTTC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ACATCGAGCCCTATTT	ref_1943_missing	51	56	52	55	66	38	67	41	62	44
ATGTACTGCGTAGTGC	ref_1943_missing	2	0	2	2	1	2	2	0	5	1
GTACACGGGGCACATC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TAACTTCTTCGGGGCT	ref_1943_missing	1	2	1	0	5	2	3	0	0	1
ATGTGGGACATTAGTT	ref_1943_missing	3	3	1	4	4	2	5	7	4	0
TTTGCCGTCCTGGCGT	ref_1943_missing	4	23	8	13	25	8	18	5	15	5
TATACTCGTAAGGGCA	ref_1943_missing	7	17	6	13	12	6	7	5	4	15
ATAACAAGGCGTCTAT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CCTGTTAACTTCCATC	ref_1943_missing	3	2	4	16	5	8	13	12	12	1
AAGTTCCTAGAACAGT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TCTCGCTAAAAGCCCA	ref_1943_missing	29	11	25	31	4	25	12	23	12	23
CCTGGAAATGAGTTCG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TCATTGTTTGTGTACT	ref_1943_missing	6	10	7	2	10	3	14	1	8	4
TAGATTGCAATAGCAA	ref_1943_missing	11	12	13	4	12	10	14	3	11	8
CTATCGCTAGGTATTT	ref_1943_missing	3	4	4	6	7	6	3	4	5	4
AGTGCTAAAAAATCAT	ref_1943_missing	5	11	4	5	6	6	12	11	3	5
CGATGTGTTATGCTCT	ref_1943_missing	1	2	1	0	1	0	2	1	1	0
GTGACAGAAGCATCCG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CCTCGTAGGGGTGTAA	ref_1943_missing	0	3	4	1	1	3	0	5	1	0
TTTTATCATTTACGGA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGTGGCCGCAACTGCG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GTGCTCTAGTTACTCT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GACGGCCACAGAGTTC	ref_1943_missing	4	1	5	1	1	1	6	7	7	3
TACAAATGTTCATTTG	ref_1943_missing	3	7	6	4	4	8	10	3	12	3
CAACTCCGCGGAAAAG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TATTACTTGTAGCATA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TATTGACCTCTTCCAG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGGAACTCTATTACTG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGTATACTTACGCGC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTCGATCTTGACCCTT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GATGCGGGTGGTCTAC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TATACCATTCTCCATG	ref_1943_missing	7	17	10	6	12	9	11	7	16	5
AAATAATGTATCGCTC	ref_1943_missing	12	19	10	13	20	6	24	6	21	12
TATGGGTCACTTGATG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TGAGATCGTCGAATAT	ref_1943_missing	10	17	10	12	23	3	19	7	17	11
GCGTGTGGGCCAACTT	ref_1943_missing	8	9	9	4	13	9	10	7	7	2
CGCGAGGCAGTAAGTG	ref_1943_missing	2	1	4	2	2	4	5	4	4	0
GTAGGTTGACGCATGG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TTGCTCGCACGTACAT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TTTTCGATTTGGTCAG	ref_1943_missing	20	21	15	13	23	17	19	13	17	10
CTCTTGAAGTAGTTGC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TTTACCACGAGTGCAA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GCGCGACTAAGGCGGC	ref_1943_missing	0	2	1	2	4	3	6	4	3	3
TTGGTCTTAATTAGCG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GACCCCCAATACGGGA	ref_1943_missing	1	0	0	0	1	0	0	0	0	0
TCTTGCAACATACTTA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TTATGTGGTCTGGGAC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
AAGCGAATTTTCCTCA	ref_1943_missing	11	6	7	5	13	14	13	4	8	1
CAGTCCGAATAATCCA	ref_1943_missing	1	5	1	1	3	0	2	4	2	0
CGCGGCAACCAAGCTA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GTTTTAACGGTTTAGT	ref_1943_missing	1	2	0	0	2	1	2	3	7	2
TAAACGTAACCTGTCA	ref_1943_missing	4	8	7	2	9	1	8	4	11	10
ACGATTTTACAACAAT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GCTTACTTTACGCAAT	ref_1943_missing	6	5	2	3	4	5	3	0	10	0
GATACTTGACTCAGGG	alt_1943_missing	4	6	8	3	5	6	12	8	12	4
CCGTTTAGTTACAGGC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GGTAACTGAGCAGTGC	ref_1943_missing	5	12	4	6	5	4	4	1	7	4
TCTTGTGTGGGACTTT	ref_1943_missing	21	43	18	16	31	9	38	17	50	15
AACTTGATGTATTTTC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTTGGTGTATTGAGCC	ref_1943_missing	3	5	6	4	4	1	7	5	1	1
ATCTATGCCACACGTG	ref_1943_missing	4	6	10	1	8	0	10	5	9	3
GGAGATCTTTACATAT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GTCTTGGTGACCGAAG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ATGTAGTATTTGTCTC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGAGCGACTCTTTGT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ATTCCTGCTAGCGCCG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
AAGTTTACAGGCGAGT	ref_1943_missing	14	9	6	10	11	12	23	12	11	14
ATTTATTCATGGACAG	ref_1943_missing	4	10	9	3	6	2	12	2	2	4
GAAAACCGGGGCATAA	ref_1943_missing	24	26	21	16	41	17	39	24	28	15
ATACATGTGAAGTGTT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGCACCTGGCGTATAA	ref_1943_missing	28	35	17	28	39	21	38	14	33	15
CTTTGTGAAGGTGTAG	ref_1943_missing	3	2	8	5	4	1	4	3	5	1
TTCGCTACTAATCTCC	ref_1943_missing	1	4	2	2	2	3	4	3	2	1
GCAACTCCATCCGATT	ref_1943_missing	5	2	0	2	6	2	5	5	4	3
CACGGCCGCCGTGCCA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ATGGTACTCTAAGATA	ref_1943_missing	1	2	0	0	2	0	0	3	1	0
CGGCACGTCGGTATGT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GGAATCTGTGCTTCAA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
AAGTATGAGCAGTGAA	ref_1943_missing	0	4	1	2	2	0	2	3	4	2
TTATTCATATGAAATA	ref_1943_missing	15	31	30	19	25	27	32	23	21	22
GACAAGACCCGTTAAA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTAATCCATTTGGCCT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TAATCTCTAGTCGTGC	ref_1943_missing	0	4	3	9	9	3	5	3	6	2
TTGTTTTATGAATGAC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TTTGATGCAGTCCGTT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TGAGAAAAACCCTGAG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TAACCAGCCCCCCATT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGGGGAGTCATGCCGC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CCCATTCTCGCCGCGG	ref_1943_missing	1	6	0	4	2	0	2	2	2	1
ACGTACCCATGAGTGC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
AATGTCTTTCTTGGAC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TTCCCGGCCAATGTGT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ACCACGAATGGCGGCT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ACAATGCCATCTCTGA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GTAACATGTTATCTAC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TCTCGAGTCTGCTGCT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGGAAATCCTAAAGT	ref_1943_missing	0	0	0	0	0	0	0	1	0	0
TTTGCGTTCATAACCT	ref_1943_missing	11	14	6	9	12	9	11	8	18	17
TCTGACCGGTCTGCTT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TCGTGTTCTTGTCGAC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GTACCTATCTACGCAT	ref_1943_missing	12	12	5	8	16	17	13	8	14	7
ACGGACTACCTATGCA	ref_1943_missing	0	2	1	1	4	1	1	0	2	2
GCAAACCATTACCCTG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGGAACTCTATTCATG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGCTCAGACGATGCAG	ref_1943_missing	10	8	7	7	8	5	5	1	12	1
AGTGGCGATTGCAAAC	ref_1943_missing	4	8	5	2	12	3	13	2	11	6
GGCAGGTAATTGGAGG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
AGGTGACGTCTGCAGG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGGCTCACGATCACTA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CGATCATTATTTTTAT	ref_1943_missing	11	7	6	4	19	5	7	6	6	6
GTAAAAATCACCCTCG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CAATTCTTAACTTGAC	ref_1943_missing	3	17	9	8	8	8	10	3	10	3
ATATCAGATTTGTCCC	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GGCTGCAAGCGTTAAT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
TCTATATCGGTATTAG	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGAGTGTTTCTACCT	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
GAGATTCTTAACCCCT	ref_1943_missing	2	3	5	2	2	3	5	3	4	7
TTCCGCTTTGCCACTA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
CCGCCTTTTTCAAGAA	ref_1943_missing	0	0	0	0	0	0	0	0	0	0
ATTTTTGGCGCCGTCG	alt_1924_upstream	137	167	169	114	185	110	186	110	199	134
GTCCCGTCGTTCTCAT	alt_1924_upstream	3	12	3	4	10	0	12	4	11	2
GATTTCTGGCCGTATT	alt_1924_upstream	76	130	82	78	114	88	136	94	116	70
GTGCTCGCAACGTCCT	alt_1924_upstream	0	4	5	2	2	3	3	2	4	1
AACCGCGTCCCAATCA	alt_1924_upstream	18	30	25	18	42	22	30	26	42	24
AAACTAACTCATCGGG	alt_1924_upstream	14	7	12	7	12	10	9	7	18	11
TCGGACATTCAAGCTT	alt_1924_upstream	104	146	115	120	169	86	152	84	156	87
GTCGCCCATACAACCG	alt_1924_upstream	36	55	31	35	49	20	37	34	57	20
GATTTGTGCCTGCCTA	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
TTATACCGCGTTGATG	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTCGAAACAGATT	alt_1924_upstream	3	8	2	7	12	4	11	4	10	2
TCATATATAACAAACT	alt_1924_upstream	0	0	0	0	0	2	0	0	0	0
GTCTCAAGGAGGGAAA	alt_1924_upstream	97	183	122	117	219	98	215	101	226	120
AAAGGTGTGCGTACGG	alt_1924_upstream	13	15	14	13	19	7	9	12	29	10
ATGCTCACAATCGGAC	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCATGGCTTCGGG	alt_1924_upstream	6	9	11	7	9	7	5	6	19	5
ATACCTGTCTGTCTCA	alt_1924_upstream	15	25	13	12	22	14	31	12	25	12
TAGATCCAATTTAAGA	alt_1924_upstream	27	38	29	36	36	35	50	26	58	22
CGGGAGCCTCCCTGAA	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
GTGATTTGTGGTCGTG	alt_1924_upstream	21	36	34	32	53	31	46	28	42	24
CGACTCCCGTATCTAA	alt_1924_upstream	19	31	30	18	61	9	65	10	30	10
TTGAGAGCGGCCTATC	alt_1924_upstream	15	26	16	24	28	16	24	16	34	16
TGTGCGATTTAGTTTG	alt_1924_upstream	11	21	19	19	26	10	24	7	29	20
CGTCAGAAATGACCTG	alt_1924_upstream	13	20	21	9	21	13	21	7	17	6
AATCTTTAGCAGCGTT	alt_1924_upstream	15	15	15	14	16	11	21	10	23	14
CCGGCGACTGCTATGT	alt_1924_upstream	3	22	6	5	13	4	22	4	19	1
CCCGAATGGAAATGTT	alt_1924_upstream	27	30	26	17	36	32	43	18	48	23
TCCGCACGTCTAGTAC	alt_1924_upstream	1	30	12	10	24	5	17	13	16	7
TGGGCCTGACCTGGGC	alt_1924_upstream	7	13	8	8	13	11	14	8	18	10
AGCATACCCCCTCAGC	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGCCATTTTAGGT	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGCTATGATTGA	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
AGCACTATTCTTGAAG	alt_1924_upstream	33	68	34	37	51	46	67	29	78	35
TCTGTGGCATTTGGTG	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
GTCCCAATTTGCCTCT	alt_1924_upstream	68	107	65	71	109	77	106	65	105	71
CCGGTACCGCACCGCC	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
TCAGCACGTTGGCAAC	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGCGTGCTGCGCG	alt_1924_upstream	11	49	22	15	51	16	45	10	73	25
ATATCCTCCTCAGATT	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTAGATCCCCAGA	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
CCTACTTGCCGGAAGT	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
GATTTTCACTTGATCG	alt_1924_upstream	23	47	29	31	62	22	60	20	40	20
AATCTATGAATTTTAG	alt_1924_upstream	11	14	3	10	20	8	16	9	12	9
GTCGCGATATATCAAA	alt_1924_upstream	9	16	8	7	11	5	18	4	20	5
CAATAGATGCGAAACC	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
AGCGTTGTTTAATGTG	alt_1924_upstream	18	19	20	12	19	20	35	14	18	8
TCATACGTTAATATTC	alt_1924_upstream	32	49	30	27	45	30	57	20	45	29
GCAACGTTGATTCGGG	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCAGTGGTAGACT	alt_1924_upstream	9	13	5	1	9	5	10	4	11	9
GTATTAGTTGTACAGG	ref_1924_upstream	0	3	3	2	7	2	2	2	3	2
CTCGATGTTCAGTTTG	alt_1924_upstream	7	9	6	10	11	6	18	9	12	7
TAAAGTTTTTTTTAGC	alt_1924_upstream	34	44	32	25	46	28	43	30	63	25
GCGAATACTTTAACTC	alt_1924_upstream	9	26	14	13	18	15	22	11	25	13
ACATTACTGCATGTTA	alt_1924_upstream	50	69	54	50	68	48	75	49	64	42
AAGGATACAGGATGAC	ref_1924_upstream	14	25	11	15	16	8	27	9	25	4
CAAGCTTTTTCCAGCA	alt_1924_upstream	0	0	0	0	0	0	0	0	0	0
TTATTTTTTCTCTCGC	alt_337_missing	0	0	0	0	0	0	0	0	0	0
ATCTAGAGGGTCCTCG	alt_337_missing	0	0	0	0	0	0	0	0	0	0
TATGAATATCCACGCC	alt_337_missing	178	140	251	219	127	192	149	170	153	137
CTAAATCTTTTGAGAC	alt_337_missing	0	0	0	0	0	0	0	0	0	0
GCGCTCCACAGGGTGC	alt_337_missing	58	53	77	58	41	62	75	75	50	55
CAATCCGCTTGAAACC	alt_337_missing	114	80	111	121	84	106	97	101	91	94
CACTTTATTATTTTCT	alt_337_missing	140	61	185	168	96	107	87	160	94	141
CGCCTACACTTGACTG	alt_337_missing	4	5	3	3	3	1	0	2	5	0
CACACAGCTGAGTTGA	alt_337_missing	17	17	19	15	18	20	13	20	15	20
TCACCCTGTGCTTCCG	alt_337_missing	0	0	0	0	0	0	0	0	0	0
ATACCGCTGCGGATTC	alt_337_missing	53	36	60	55	37	44	43	37	47	46
TGGCGTTATAGCATGA	alt_337_missing	24	16	17	19	16	17	7	14	21	9
GTATACTCTGTAATTT	alt_337_missing	0	0	1	0	0	0	0	0	0	0
TAAAGCCTGGCGCCTC	alt_337_missing	0	0	0	0	0	0	0	0	0	0
TTTGCTGGTTCTATTG	alt_337_missing	0	0	0	0	0	0	0	0	0	0
GTCAACCAGTTCCAAA	alt_337_missing	5	15	13	9	6	5	20	6	9	7
TAACGTTCGCTAACCA	alt_337_missing	13	14	19	19	20	9	13	15	13	25
TCACCATCGTTTACGT	alt_337_missing	8	43	20	14	42	16	39	17	34	16
TGCTGAGTCGTTTATT	alt_337_missing	0	0	0	0	0	0	0	0	0	0
AGTTCTCTGTCCCCAA	alt_337_missing	7	4	3	8	2	1	9	5	2	5
CCAGGCTTTTCGGGTT	alt_337_missing	22	14	8	18	11	8	20	19	25	16
TTTGTAAGTAATCTAG	alt_337_missing	0	0	0	0	0	0	0	0	0	0
TCGGACGTTGCGAGTA	alt_337_missing	5	3	8	4	4	3	2	4	5	6
TGACACCCCCTCCGTG	alt_337_missing	164	184	185	130	168	149	157	122	211	139
ACCCGCCGAACTTTCC	alt_337_missing	13	5	8	15	6	12	24	13	10	18
CGCGTTTCTACAAACC	alt_337_missing	9	7	18	12	13	10	15	10	11	9
CCAGCAAAACTGACGG	alt_337_missing	9	2	5	2	11	4	5	8	6	5
ATAACTTAATGCGTAT	alt_337_missing	48	25	53	52	34	45	34	60	33	40
CTTGGTGGTCACTTAC	alt_337_missing	0	0	0	0	0	0	0	0	0	0
GATGATAGTCTGATCC	alt_337_missing	19	17	30	30	31	11	17	33	27	21
TTCTTGCATTTGACAC	alt_337_missing	16	9	11	4	4	9	8	4	11	7
TGTTCTTTCTTATACC	alt_337_missing	117	78	103	111	49	95	49	60	71	66
TCGCATTTAGAGACCC	alt_337_missing	75	49	92	79	66	65	70	61	59	53
ATGCCGGTTGAGTCTT	alt_337_missing	0	0	0	0	0	0	0	0	0	0
GAGCATCTACAGACTC	alt_337_missing	9	6	17	10	7	8	10	12	9	3
GAGTTGCAGCTGTTCT	alt_337_missing	10	8	15	18	10	10	15	11	11	15
CGTTGCCACCGGAAGC	alt_337_missing	0	0	1	2	1	0	0	1	0	0
CTCTGGGCAATTACCT	alt_337_missing	0	0	0	0	0	0	0	0	0	0
AAACCTCAGAACTAAG	alt_337_missing	51	35	68	37	54	46	49	41	40	53
AGTCACCCTTCAACCA	alt_337_missing	124	102	182	109	84	111	110	100	109	117
TAACCCAAGCCCGTGC	alt_337_missing	22	18	43	16	25	33	19	24	14	21
CGCCGCGCTTCTCCTT	alt_337_missing	49	58	81	60	41	63	50	67	70	59
GTAGTCGTTATACGGA	alt_337_missing	0	0	0	0	0	0	0	0	0	0
TCTACGATCCGGACTT	alt_337_missing	31	19	21	31	13	22	25	25	21	30
ATCCAGTGAAGGCAAC	alt_337_missing	120	102	154	123	84	117	113	111	113	132
GTCTAAAGATATATGT	alt_337_missing	21	13	11	12	12	21	14	9	17	13
TGAAGGTGGTATAGGG	alt_337_missing	50	35	59	51	39	54	51	55	41	38
GTTAGCCCATATCGTG	alt_337_missing	0	0	0	0	0	0	0	0	0	0
CCATTATCCATCCGGT	alt_337_missing	35	21	32	36	26	23	26	25	21	17
GTAGTTGGTTTGATGT	alt_337_missing	0	0	0	0	0	0	0	0	0	0
TATTGATCAATATGTT	alt_337_missing	1	0	7	0	2	2	3	3	7	0
AACGAACCGAACTCGC	alt_337_missing	26	11	30	16	23	26	15	25	13	26
GTCTACGGCTCATAGC	alt_1720_upstream	6	3	4	7	9	6	2	5	6	4
AGGTTTACTCTATTCA	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGCCCTCCATCAG	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GGTACGGCCGCTACTC	alt_1720_upstream	17	24	29	27	26	21	18	25	26	17
GTGGTCTATAGTTTTC	alt_1720_upstream	12	18	15	11	10	5	12	6	10	10
TGTTCGTAGTAGCAGG	alt_1720_upstream	69	61	80	65	73	85	65	57	71	63
TCATCTCGCTTACGTG	alt_1720_upstream	156	153	231	208	169	238	172	151	174	207
ATGGGCTACATGCATT	alt_1720_upstream	54	42	80	64	51	66	45	62	56	51
TTGCGATCACATCATC	alt_1720_upstream	34	26	31	17	14	27	7	26	16	27
CCGCTTACGCATCAAA	alt_1720_upstream	34	37	51	53	37	35	39	30	43	26
GGCAAGCAGGAGATTT	alt_1720_upstream	43	47	60	44	38	34	47	54	42	47
ATCTAATTAGCCCCAC	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GTAAGACCGCGATACG	alt_1720_upstream	4	3	2	4	3	2	0	2	3	2
ATAAAAATGCGCTCTT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCATACGCCCGAA	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GTTCGATCTTAGATAG	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
TAATGCCTTCTGAGCC	alt_1720_upstream	37	18	46	33	27	32	25	25	24	29
ATATGCTGGGGTTAGT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGCGCTTCCTCT	alt_1720_upstream	103	62	132	98	86	90	73	92	82	95
TGCCGCTCCTAAGTTT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTTCGCCGCCACA	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
TTACAGCTTCTCGGGG	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
CGGGTGGGCACCGGAC	alt_1720_upstream	31	36	38	24	27	20	26	34	27	27
ACACGGGCTTCCAACT	alt_1720_upstream	46	40	70	61	48	60	50	75	60	66
CGGAGTTTCTAATCGG	alt_1720_upstream	128	111	157	100	103	99	92	129	97	119
TACTGCTGTTTATAAC	alt_1720_upstream	17	11	7	12	9	14	13	7	10	15
CCTTTATAATCATTAC	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGCTAAACTTTTA	alt_1720_upstream	8	12	13	18	15	6	6	6	6	10
ACCGTAAAAAATTATT	alt_1720_upstream	169	122	152	149	110	142	134	169	111	143
CGTGAGATGGTTTCTG	alt_1720_upstream	154	119	197	186	154	152	157	169	140	152
CACGAAGCTTCCGGTA	alt_1720_upstream	134	85	137	127	116	114	101	117	120	107
AAACCAAGGGGCTAGT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
CATATTTCATCTACAG	alt_1720_upstream	133	96	155	140	114	124	127	111	136	105
TCCAGCACCGCAAGTG	alt_1720_upstream	67	65	101	75	62	74	72	63	73	54
CGCACATTTAATCACT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GTGGTCGCTTAAATAA	alt_1720_upstream	7	0	2	3	3	2	0	0	0	1
ACCTCTGAGACATATG	alt_1720_upstream	39	40	40	37	44	25	26	34	32	21
TGTTACTTTAATTCTG	alt_1720_upstream	7	7	7	8	2	8	8	6	7	9
TTATACTCTTAAGCGG	alt_1720_upstream	10	8	10	11	10	4	5	7	10	11
GTTCCTACTTACGTTC	alt_1720_upstream	14	19	23	18	17	21	30	12	43	16
TCCGTGGTAGTTCTGT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGCATTGGTTCTT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
CACTCCCCTGGATACT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GATTCTTTTGCCTACC	alt_1720_upstream	30	16	41	12	24	24	23	24	18	21
GTGCACCCAAGGGTCG	alt_1720_upstream	68	58	87	64	60	86	59	86	75	66
TATTATCGCTTTTTGT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GTTGCTACATATAAGT	alt_1720_upstream	47	55	59	55	53	42	59	46	56	50
AACAGGAAAGTAAAGT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTCGTCTATTGTC	alt_1720_upstream	47	36	55	44	43	47	37	55	47	34
TTGTGCCTGATGCCTC	alt_1720_upstream	30	24	47	19	21	32	25	21	18	18
TGCTATTAGCATGCCT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTGTATTATTGCC	alt_1720_upstream	40	42	59	34	39	24	39	44	57	51
CGGCTTTTTCACGTTT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
TATGGGTAAAGACTTC	alt_1720_upstream	10	9	10	13	10	10	22	11	11	11
GACCCGGCGTTCCAGT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
GCTCATCAGTTTACCT	alt_1720_upstream	25	16	41	29	29	30	34	30	25	25
ATCTCAACTTTGGAAA	alt_1720_upstream	8	8	15	13	10	11	9	10	10	14
GTGTTTCTATTCGAGT	alt_1720_upstream	0	0	0	0	0	0	0	0	0	0
ATACTGTAGGTGTAGG	alt_1720_upstream	21	13	13	14	16	14	18	15	16	20
GTGGATTTCACCCGTC	ref_6128_new	0	1	0	0	0	0	0	0	0	0
ATGGATTGTGTGCGGC	ref_6128_new	17	13	23	22	16	19	18	15	16	17
CATTAAGGAAGTTTTG	ref_6128_new	114	63	118	102	72	111	104	104	120	108
CTTATTGCATCCATCG	ref_6128_new	67	42	82	54	64	66	56	42	44	51
CATGTAGCTCGCCACA	ref_6128_new	5	5	14	6	6	9	5	8	3	5
AGTTTTAGACGAGTCA	ref_6128_new	46	36	45	49	41	34	45	39	53	44
GTACTCACTTTAAGTT	ref_6128_new	37	36	42	29	35	18	27	39	33	26
CAACTCTCGCTTTACT	ref_6128_new	19	13	21	10	14	16	12	14	23	22
GTGGTGACATGCTGGA	ref_6128_new	32	20	31	35	20	39	22	24	30	30
TTACTTATGGTGTGCG	ref_6128_new	9	17	8	12	8	9	17	15	25	5
GGGGGAATTGACCACC	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CCTAGTTCCCCAAATT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GTATCTGTGTACACAC	ref_6128_new	0	0	0	0	0	0	0	0	0	0
TGGCGCAAATCTGCTT	ref_6128_new	35	27	46	36	29	36	33	38	28	32
GCAGGATCCTTGTACG	ref_6128_new	57	34	63	48	54	46	62	56	48	42
TTCCTCGTGGCCGCTT	ref_6128_new	72	53	95	74	70	73	53	45	61	58
ACCTACTTATGTGCTC	ref_6128_new	154	188	179	162	193	145	179	141	196	126
TCTCCCATATCACCTT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GTGTATTCGCTCCCAG	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CAGCGTTTTGCTGTGG	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CGCGCGGTGCCTGACT	ref_6128_new	19	9	16	9	9	9	10	8	10	5
ACGGCAGCAACAGCTG	ref_6128_new	56	40	64	63	56	53	44	44	46	43
TAACCTTCTGCAGATC	ref_6128_new	0	0	0	0	0	0	0	0	0	0
TTACACAAGGCACCAC	ref_6128_new	42	38	55	42	58	47	45	40	50	59
TACATAGGCTTCATTG	ref_6128_new	3	3	5	1	3	7	6	1	2	4
CGCCGACGGGCTAATT	ref_6128_new	18	11	23	13	17	19	15	13	17	7
GGTTTAAGCTGATTGC	ref_6128_new	44	23	60	47	29	40	32	54	35	42
TGCGTGCTTCCATTGA	ref_6128_new	107	127	141	112	116	105	93	106	122	94
ATGATATGTTGTCGTT	ref_6128_new	136	88	158	140	107	133	104	132	100	125
AGTTGTCATTGATATC	ref_6128_new	0	0	0	0	0	0	0	0	0	0
AAGTACCTCTTCTGAC	ref_6128_new	21	18	18	30	17	22	22	19	25	20
TTCGCAGTCTGACTGC	ref_6128_new	50	70	47	58	99	44	86	52	90	45
TCAACACGGAATGGCT	ref_6128_new	63	45	90	62	58	74	45	54	38	63
AATGGCAAGCGATCAG	ref_6128_new	62	37	69	58	39	50	44	42	45	42
CGACTAAGAGGCAGGC	ref_6128_new	0	0	0	0	0	0	0	0	0	0
TAACATTTTTCGGTCA	ref_6128_new	160	120	157	152	118	138	125	129	136	128
CAATGCTTTTTCCACT	ref_6128_new	37	21	48	34	30	25	22	47	39	23
ACAATCGCGAAGTTGC	ref_6128_new	61	35	68	61	49	55	63	54	54	63
GGCATCGCATTAGCTT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GCAGGTCGTATCAATA	ref_6128_new	24	26	31	32	28	25	20	25	18	23
TCATAGCGATACAATG	ref_6128_new	10	6	10	11	14	8	9	12	6	10
TTGCATTCCCCCCGGA	ref_6128_new	70	87	111	89	65	83	97	57	143	70
ATGTCTCATCTGCGGT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
AAAGCTGCAAATGGCC	ref_6128_new	14	14	14	29	16	22	23	10	17	10
AGGCGCTGAGAGACCA	ref_6128_new	24	35	47	41	32	39	28	34	33	18
TGAGCGCAGCTCATAG	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GCTCTCGCGTTTGGGA	ref_6128_new	37	34	50	31	25	36	39	40	39	36
AGTGAATCCCCCAATG	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CCTTGTCTGGACTTAC	ref_6128_new	34	31	37	17	38	26	30	29	39	25
GAGACTTAAGGCTTTA	ref_6128_new	28	33	48	27	42	41	39	29	33	28
GTTTAGGATGATAGAG	ref_6128_new	101	116	141	120	113	112	105	110	119	94
CATTACTGTTAAAGTT	ref_6128_new	51	70	64	53	68	43	53	60	49	52
CCTGCGTCTCTTGCCC	ref_6128_new	7	21	22	13	16	15	10	16	14	24
ACCTACTTATATGCTC	ref_6128_new	0	0	0	0	0	0	0	0	0	0
TATCTGAGGTTACAGG	ref_6128_new	41	31	57	42	38	36	36	30	55	40
CTCGTCATTTTCTTAT	ref_6128_new	20	21	19	16	22	27	28	22	27	24
TATGTACTAGATGATT	ref_6128_new	103	87	133	93	78	105	71	83	81	82
AGTTATTACGCTATAA	ref_6128_new	104	67	125	109	92	92	96	104	89	92
TAGAACAAGATCGTCG	ref_6128_new	66	56	91	95	74	83	75	89	64	72
GGTTAATCAGTGCCAT	ref_6128_new	16	21	29	35	17	16	21	19	15	26
GTTCGCCAAATGTATC	ref_6128_new	43	59	52	72	52	44	53	38	49	36
ATAAATCCATAAACTG	ref_6128_new	29	17	44	31	29	23	28	26	23	23
CATCGTCATAGATGTG	ref_6128_new	13	12	9	12	16	7	6	9	10	7
CGCTATGGCGATGAGG	ref_6128_new	6	3	8	5	7	4	8	7	5	12
CGCCCCTTGTCGGTAG	ref_6128_new	0	0	0	0	0	0	0	0	0	0
TCCTTGTAGTTGATTA	ref_6128_new	7	10	10	2	9	10	3	4	8	8
TGGATCTATCTTTATC	ref_6128_new	8	10	12	6	6	9	10	6	11	5
AATATTTTCTATCGGA	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GATTGGGTGCAATTCC	ref_6128_new	23	35	34	23	31	30	26	43	34	23
TGTACGTACCATTTTT	ref_6128_new	23	48	41	53	45	31	54	28	29	34
TGATGGAGTATCCGGG	ref_6128_new	3	2	0	2	0	2	3	1	2	1
CGTAACCAGGTACGTA	ref_6128_new	1	0	0	1	0	1	1	1	0	0
CGCATGGCAGTGTTTT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
ATCGACCCCGTCTAAT	ref_6128_new	35	47	54	38	48	40	63	29	61	26
CATTGAAGACACCGCT	ref_6128_new	16	7	5	6	9	11	11	13	15	7
ACATCCGGCTCAGTAA	ref_6128_new	6	7	10	4	5	6	8	6	2	7
GTATTCCTCGTGTTTC	ref_6128_new	3	6	2	3	2	3	7	5	4	2
TCGGACTCCGGATGCT	ref_6128_new	20	24	18	16	27	21	19	7	38	19
GCCTTGTCAAGCCCGG	ref_6128_new	3	6	3	9	5	7	6	4	7	6
ATACGGTTTGGCCACA	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CTCTGTAGGCTGAGCC	ref_6128_new	160	147	199	155	139	137	138	163	160	147
TTGGATGGGTAATTGT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CAGCTGGAAGATGCTT	ref_6128_new	124	108	151	131	116	100	103	116	110	84
TTGAGGCTCCGGCTAG	ref_6128_new	0	0	0	0	0	0	0	0	0	0
TGTTCTCCGGACTCTA	ref_6128_new	17	15	19	12	10	11	13	11	15	18
TTGCAGGATTATGGCA	ref_6128_new	148	127	173	134	124	141	130	133	145	129
TAACCAAGAGATCGAG	ref_6128_new	25	11	10	24	7	15	11	15	12	13
ACTTGTGATATTACTT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CCAGTGACGGAGTCGT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
AAGCCCATGTTAGTAT	ref_6128_new	8	17	18	10	19	11	16	9	11	8
GCACGGTGGTCTGGAT	ref_6128_new	11	4	5	7	0	5	12	4	6	3
TTTATACCACTGAGGT	ref_6128_new	33	13	54	35	21	31	31	19	41	16
AGATTACATGGTAATG	ref_6128_new	2	0	3	0	0	0	3	1	1	0
ATGAAGGATTTTGCAA	ref_6128_new	97	99	146	106	111	124	109	116	116	113
GCCGTACAGAACTCAA	ref_6128_new	49	36	51	48	43	45	37	40	42	41
ATCCTCAGTTTTTGCC	ref_6128_new	14	13	18	10	14	18	16	12	9	8
AAACTAATTCAGTTTG	ref_6128_new	35	29	28	37	24	29	41	30	31	19
GTTAGCTCTAAATTCC	ref_6128_new	48	29	53	39	37	42	36	44	25	34
CCTTCCTTCTTTTTTC	ref_6128_new	52	63	59	59	52	48	75	65	87	49
TTTGCGACGAGGGTGC	ref_6128_new	20	15	12	22	22	16	19	30	18	19
TGGGGTCAACACGGGG	ref_6128_new	77	48	94	67	46	66	49	58	60	47
AATTTTGGTATCCGTG	ref_6128_new	15	13	10	9	5	13	1	3	4	10
TATCCACCCTAGTAGC	ref_6128_new	35	38	47	34	25	24	30	21	46	25
TTTTATAGGTCTTACT	ref_6128_new	17	12	11	15	11	10	16	6	12	11
CTCTACGGACCGGGAC	ref_6128_new	91	89	99	104	76	89	78	80	96	86
CGCTTTGTTTGGATGT	ref_6128_new	11	4	11	13	8	14	14	13	13	10
TGTGCAACGTACAGTA	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GCTATAAGCCTTCTCG	ref_6128_new	23	26	50	25	30	33	25	37	24	18
GACGGTCTTTTGCGTT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CGTAGTGAGTGATCAT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CGGCTTTCTGAGTCCT	ref_6128_new	32	18	42	34	20	31	24	25	27	33
TCCAGTATCTGATTTA	ref_6128_new	11	16	24	19	15	15	20	10	9	10
ATTATCGGATTCCCGT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
TCTCGCACAGCTATCT	ref_6128_new	7	11	9	12	16	7	7	6	6	5
TGGCCTCGTCTGCGTA	ref_6128_new	111	119	171	154	105	150	123	92	122	111
GATTCCCTAATTGGTT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
GCAGTACGCATCATCA	ref_6128_new	16	16	24	24	11	11	9	24	10	14
AAGCAGGCTAGCCTTT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
AACGTTAGTGGCAAAA	ref_6128_new	24	30	29	22	34	29	35	34	35	25
GAAGTTTCTTCTTCAC	ref_6128_new	24	24	37	23	15	22	23	31	34	28
TAATTGGTAGGAAAAT	ref_6128_new	239	168	230	210	151	197	143	193	181	192
GCTTGCTAATTGATTA	ref_6128_new	51	38	57	30	41	40	57	35	44	36
GACTCTCCTCGTAAGT	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CAAGCAGTGAGTGATC	ref_6128_new	0	0	0	0	0	0	0	0	0	0
CAAACATCTACAGTGA	ref_3303_RC	1	4	4	4	5	5	3	6	2	7
CAGATGTTGTTCGTCC	ref_3303_RC	15	13	21	5	14	14	11	12	13	16
TCTCTGCCGTGTACTG	ref_3303_RC	54	55	60	45	46	40	39	44	56	41
CCTCGATCCTGCGACT	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
GCTCTAAACACTTTGT	alt_3303_RC	73	48	58	46	45	48	56	51	66	52
CGTCTGAGATTCTGTC	ref_3303_RC	2	1	2	3	0	0	0	0	2	0
ATGAGTTAGAAATGGT	ref_3303_RC	8	12	16	9	17	19	22	12	9	14
TCATTTTTGGTTCATT	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
TTGGAACTTTTCCTGG	ref_3303_RC	27	21	26	16	31	33	14	23	18	20
CCTTGTGCCGACCCTA	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
TTTGGAAAGACGTGTC	ref_3303_RC	46	61	70	56	50	61	45	41	56	51
CCCGATTATGCGCTCA	ref_3303_RC	14	19	11	13	17	14	21	14	23	12
AGGGTACTTCCGGGAA	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
CACCCCTTGTCCCCCT	ref_3303_RC	28	22	25	28	14	29	19	31	30	14
CCGGTCGTCCTTGTCA	ref_3303_RC	32	64	36	30	52	35	64	33	73	33
TCCGCATTCCCCGTTG	ref_3303_RC	1	4	0	0	0	0	3	0	2	0
TTCTTCTATAGGCATC	ref_3303_RC	9	4	11	9	4	7	6	5	9	10
GTTGCCTCCATAAGGG	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTGAATTGTTCC	ref_3303_RC	9	3	2	4	2	3	5	5	8	1
GGGTCGTTGTCGAGCA	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
CGATGTAGTGTCTTCG	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
GTGTATTTTATGCACC	ref_3303_RC	63	33	43	31	35	54	42	30	58	32
TCGGCGACCTCACGTG	ref_3303_RC	9	11	21	24	21	12	17	16	25	23
CGTGTGGAGCATGTAT	ref_3303_RC	19	10	18	15	15	11	16	7	18	18
GAGCCCTCGAGCATTG	ref_3303_RC	149	142	165	151	163	145	165	114	150	145
CAATTTCAGTGCCTTA	ref_3303_RC	8	5	9	5	6	12	7	4	1	10
TTGCTCTTGGCCTTTC	ref_3303_RC	6	3	9	11	14	5	12	10	10	6
GGTTCTGGTCTGGTGT	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
TTTACGTGCTCCATTC	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
GCCTTATATTGCGTTC	ref_3303_RC	33	38	37	29	41	41	33	24	46	28
TATGCCACGCATGGGC	ref_3303_RC	46	32	46	35	41	41	36	39	39	35
TATTTGAAAAATTGAA	ref_3303_RC	133	105	153	125	129	108	105	112	96	119
TTTTGCTTAACGTAGG	ref_3303_RC	20	24	13	18	13	20	22	13	24	11
CAAGAAACGTCTAGAA	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
CACATTGATGGTTTAA	ref_3303_RC	10	11	14	5	13	7	9	5	10	3
TCAGTTATGCATAGGT	ref_3303_RC	41	43	43	44	43	38	58	46	52	31
GCCTCAGGGTTGATCG	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
ACCACACGTTAGAGGT	ref_3303_RC	25	31	30	25	34	23	38	28	31	32
CTATACAATGTTTGGC	ref_3303_RC	22	24	24	34	24	21	36	22	30	22
CCTGACTTTGTGTATT	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
TACGCTAGAGGATGAC	ref_3303_RC	31	18	39	31	34	29	34	23	49	44
GGGTCAATGCATTTAT	ref_3303_RC	18	20	24	17	23	15	16	22	16	19
CCACCGCTGGTCGGCA	ref_3303_RC	10	4	3	3	5	6	8	8	3	4
GACGCTTTGGCTCTGA	ref_3303_RC	27	18	31	17	19	19	30	23	30	21
TACACTAGAATGGGTG	ref_3303_RC	142	151	147	150	148	141	173	134	145	110
GCGGTTCCGTCCATGA	ref_3303_RC	62	54	59	78	66	78	65	58	61	51
AGCGCTGATCACGGCA	ref_3303_RC	47	36	46	59	27	48	40	38	33	51
ACCTAGAACTGCTTTC	ref_3303_RC	19	31	27	13	24	13	19	12	19	14
CGCCCAGGATGCCATG	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
ACATGTGTGGCGCGAC	ref_3303_RC	0	0	0	0	0	0	0	0	0	0
TACGGTTTAGCGGGCG	ref_3303_RC	10	5	9	7	5	8	6	1	10	9
TTTCAAATACCGGCGC	ref_3303_RC	57	65	70	80	81	42	62	60	59	70
TCCCCTGCCATGGTCT	ref_60_missing	8	79	10	14	74	13	76	10	63	15
AACGACTACTCTCACG	ref_60_missing	4	1	2	0	2	4	1	0	2	2
ACTCTTTTGCGTCTCA	ref_60_missing	15	7	11	14	22	10	16	6	27	20
CGCCATTCCAAAGTTA	ref_60_missing	48	72	58	62	69	49	63	51	67	33
GTTGTGATCGTCCATG	ref_60_missing	35	62	31	47	45	30	54	29	57	27
CGCGTGCTGTAGAACT	ref_60_missing	27	41	36	29	55	27	46	34	53	28
CCTTTGGCTAAATTCT	ref_60_missing	23	60	21	35	55	28	73	25	56	32
TTTGTACGTAACCCTG	ref_60_missing	62	80	72	45	102	59	85	57	73	45
CGCCTACCCTTTGTGG	ref_60_missing	119	201	152	91	212	95	200	120	238	110
GAAGGGTCGTTGCGGC	ref_60_missing	0	0	0	0	0	0	0	0	0	0
ACAGTTTCTCACGCGG	ref_60_missing	101	118	115	91	158	80	159	105	144	90
ACTTGGCAGGTGAGGT	ref_60_missing	0	0	0	0	0	0	0	0	0	0
TAAATCATGTTACTTC	ref_60_missing	24	19	34	24	30	23	25	10	27	20
ACACTTAGCATTGGAG	ref_60_missing	20	20	21	15	15	20	24	8	34	15
TATCCATCTCCTAACT	ref_60_missing	6	8	3	12	5	8	9	2	16	2
TTAAGAACACTCCTAC	ref_60_missing	0	0	0	0	0	0	0	0	0	0
AGCAGCCATTGGACCC	ref_60_missing	2	7	8	1	7	6	12	6	11	2
GATGGTATAGTTTCGT	ref_60_missing	0	0	0	0	0	0	0	0	0	0
ACGCCTACTTATGCTG	ref_60_missing	19	36	37	17	38	13	54	19	45	18
TACTTTAATATTCGCA	ref_60_missing	20	19	15	17	19	15	29	7	20	13
TGAGTGCTCTAGAACA	ref_60_missing	0	0	0	0	0	0	0	0	0	0
AATTTGTTATTTCTTT	ref_60_missing	15	21	28	11	17	15	22	10	25	15
ATTGGCCCTCACAGTC	ref_60_missing	21	54	39	30	48	23	40	34	62	19
CTTCATACTCATGTAT	ref_60_missing	0	0	0	0	0	0	0	0	0	0
TCGACGTGTGATTTGT	ref_60_missing	0	0	0	0	0	0	0	0	0	0
GTTCATCTCTGTCTTC	ref_60_missing	0	0	0	0	0	0	0	0	0	0
AAATCGCTCTTACCGA	ref_60_missing	14	40	11	9	15	12	18	12	24	12
CTGGGAAGTAGGCGAC	ref_60_missing	0	1	0	1	0	0	1	0	0	0
CGTTAGTCGAAGCGCC	ref_60_missing	89	117	110	95	131	83	112	68	124	78
GATCGACTTGCTCGCA	ref_60_missing	0	0	0	0	0	0	0	0	0	0
AGGTGCTGCGAGACTA	ref_60_missing	3	7	6	6	9	4	13	7	10	10
GTATATACAACTGTGG	ref_60_missing	77	83	70	71	129	51	123	74	135	59
TATCCTTGAGTCTTGT	ref_60_missing	57	78	70	67	65	59	84	49	76	39
CGTTCTTAGTTTTGCA	ref_60_missing	0	0	0	0	0	0	0	0	0	0
GTTTATTACAATTCAT	ref_60_missing	35	31	36	34	32	29	41	31	46	31
TACCGGCTCTATAACC	ref_60_missing	10	42	10	7	36	6	36	5	43	3
GTCGGCTTGCCGGTCG	ref_60_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTGTCTTTGTTT	ref_60_missing	0	0	0	0	0	0	0	0	0	0
GTGCAGGGCCTATTAA	ref_60_missing	0	0	0	0	0	0	0	0	0	0
AAGGTATGGTGCCCGG	ref_60_missing	0	0	0	0	0	0	0	0	0	0
TAAGGACGCACCATTC	ref_60_missing	16	15	10	22	17	6	16	18	22	11
TATAACTCTGTACTCA	ref_60_missing	8	17	12	9	19	6	26	7	14	11
GGGGGCTTTGCTTCTA	ref_60_missing	36	39	32	14	48	31	40	28	50	21
GCCCACCTAGGCAGAG	ref_60_missing	61	85	73	61	92	64	74	56	94	31
AGTTCGTATTAGTACT	ref_60_missing	16	26	19	15	29	10	17	22	20	17
TCCTGGATCAACGGGC	ref_60_missing	1	13	2	4	10	2	6	1	9	2
TTTACTGATAAATGGG	ref_60_missing	41	60	39	29	60	48	63	39	85	44
AAATTTTCAATACCAG	ref_60_missing	64	107	79	67	123	86	128	65	114	64
CCCAAGTTTAGAGTCT	ref_60_missing	5	17	11	11	12	3	12	12	14	9
TGTAGACCCCCTTTCG	ref_60_missing	0	0	0	0	0	0	0	0	0	0
CTATGTGAAGTTGCTG	ref_60_missing	96	137	107	122	133	92	153	97	141	73
ATCTAGTACTCACGGC	ref_60_missing	0	0	0	0	0	0	0	0	0	0
CTGACCCATTATCCTA	ref_60_missing	18	30	14	17	25	13	24	16	13	20
CTCTCATTGTTTCGGA	ref_60_missing	9	12	14	11	15	13	17	13	23	11
CCTCGGTCATCGCACG	ref_60_missing	25	43	23	32	36	27	65	30	39	17
GTATCGGGCCCTTGTG	ref_60_missing	0	0	0	0	0	0	0	0	0	0
TTGAGCGTACATCTTT	ref_60_missing	35	49	28	28	40	19	45	36	45	28
TATTATAGGGTTGCGT	ref_60_missing	10	17	8	20	24	15	18	15	27	11
TGTGATGTTCGAAAAC	ref_60_missing	0	0	0	0	0	0	0	0	0	0
TGGTATTTGCCAATGG	ref_60_missing	0	0	0	0	0	0	0	0	0	0
GTATCTTTGATCTACC	ref_60_missing	30	73	62	39	89	35	59	46	69	39
CGTTATGTTTAGTCCT	ref_5919_new	62	110	76	56	120	49	99	52	94	57
ATGGTTCTTTAGACGT	ref_5919_new	0	0	0	0	0	0	0	0	0	0
GGTTTAGTTTACTTTT	ref_5919_new	1	5	0	0	4	4	0	3	4	1
AGATCGACTATTTACC	ref_5919_new	13	49	13	14	72	11	57	12	62	13
ACTAGAAGGCCAATCC	ref_5919_new	23	29	27	20	33	14	21	20	23	22
CAATACATTTTTGTTT	ref_5919_new	1	0	2	6	5	2	2	4	2	2
GGCATTTATTGCCCGG	ref_5919_new	79	93	84	86	103	80	115	89	95	71
ACACTATAGCCTCATC	ref_5919_new	0	0	0	0	0	0	0	0	0	0
TCGTATTTAGCAATCG	ref_5919_new	45	51	52	44	43	34	62	44	69	48
GCGAGTCCGAATCTTC	ref_5919_new	0	0	0	0	0	0	0	0	0	0
TGAAGATATACGACTG	ref_5919_new	21	31	20	19	24	31	22	22	30	16
TTGAGATTCTCATCTA	ref_5919_new	0	0	0	0	0	0	0	0	0	0
GGGTGACTCCCAGCTA	ref_5919_new	20	27	38	30	35	25	38	21	30	32
CTACAGTTCTCCCCCT	ref_5919_new	11	16	9	6	11	9	19	0	10	6
GGTCGCACTAACCCTC	ref_5919_new	3	4	7	7	4	0	7	4	11	3
GGCCGGGAATATTGTC	ref_5919_new	0	5	0	4	12	1	12	4	11	3
GTCCTTTTTAGTGAGT	ref_5919_new	22	45	38	17	43	27	50	17	47	24
TTTTCTCGGGTTTTTG	ref_5919_new	2	4	5	4	6	4	4	3	6	2
TTTGAATGCTTGCAGC	ref_5919_new	22	38	30	16	30	30	37	18	34	26
CATTCGTGATAGCTCC	ref_5919_new	28	29	30	22	30	29	32	29	26	21
TCCTGTGCTAGGCAGC	ref_5919_new	29	62	51	37	64	37	77	45	86	34
TTCTCTTCGGTCCTCA	ref_5919_new	16	22	18	16	14	15	29	15	24	9
CACAATACATCAGTGA	ref_5919_new	21	40	30	26	44	23	35	29	42	22
TAACATGAAAGGCCTA	ref_5919_new	0	0	0	0	0	0	0	0	0	0
GCAGCAAGGATCCCGG	ref_5919_new	16	9	15	14	13	11	17	15	15	16
GGTATGCACGACTGTG	ref_5919_new	57	108	70	56	110	75	105	55	115	37
TCGTACTCTCTCAGAA	ref_5919_new	4	9	4	5	15	6	10	7	7	5
CCCCAATTCTCTTTTT	ref_5919_new	122	133	139	99	144	108	148	113	169	97
TTGCTCTTAAGCACTG	ref_5919_new	0	0	0	0	0	0	0	0	0	0
TTAGATCAGGCGTTAC	ref_5919_new	0	0	0	0	0	0	0	0	0	0
TTCGATTAGTTGGCAG	ref_5919_new	0	0	0	0	0	0	0	0	0	0
GGTCTATCCTTGCAAC	ref_5919_new	13	14	15	9	18	17	14	11	10	9
AGAAAGGTGAGCGAAG	ref_5919_new	35	47	39	44	35	28	60	38	47	38
AAATGCCTCGTCTCCC	ref_5919_new	15	17	10	13	14	7	21	7	7	2
CCGTAGGCATCAATTT	ref_5919_new	12	28	25	18	30	15	18	16	21	7
TTGTTGATTGATCTCA	ref_5919_new	52	62	66	47	77	48	59	50	73	52
CTCGCGGCTCTTGTCC	ref_5919_new	26	28	24	26	31	13	31	26	35	28
GAGCACATCGGGGTCC	ref_5919_new	0	0	0	0	0	0	0	0	0	0
GGTAAAGCGGCGTGCC	ref_5919_new	5	10	9	9	19	10	18	15	11	9
ATTACGGTGTCGCAGC	ref_5919_new	26	50	45	33	48	36	64	32	60	45
GTGTATCTTGCTTTAT	ref_5919_new	6	9	10	8	10	6	11	5	9	7
TTGTGGGATGATGGCA	ref_5919_new	18	14	10	7	14	15	17	7	22	12
CTCTTACTGATTTGTT	ref_5919_new	53	53	63	42	70	34	81	44	66	50
AGCCTTTTTGATGGCA	ref_5919_new	101	130	120	101	130	101	135	94	148	66
TGACGTGTCATCACGG	ref_5919_new	30	29	38	28	32	29	50	30	42	24
ACGATCATTTGACCCC	ref_5919_new	3	3	14	4	4	9	8	5	5	4
CATATCGTGCACTTAC	ref_5919_new	0	0	0	0	0	0	0	0	0	0
TCGGGTTATTTTCTGG	ref_5919_new	34	55	29	30	41	21	45	19	47	20
GCATTCGACATCCTTG	ref_5919_new	0	0	0	0	0	0	0	0	0	0
TAGAATTCGGTGACTT	ref_5919_new	0	0	0	0	0	0	0	0	0	0
GAGGCCACTGAGGACC	ref_5919_new	0	0	0	0	0	0	0	0	0	0
TTTTGCTAGTCGTGTT	ref_5919_new	50	99	71	49	90	51	95	57	96	51
ATATGCGGAGATGGCA	ref_5919_new	37	36	34	22	32	25	39	23	32	34
TTACTCAACGCTAATT	ref_5919_new	51	79	60	60	70	35	75	39	71	36
TATCGCAGTTTGAAAT	ref_5919_new	13	26	18	18	18	21	20	12	23	14
CAGGTTCTTCAGCCGC	ref_5919_new	43	70	67	50	57	51	63	49	72	42
GTGACCGGGTCGTTCA	ref_5919_new	8	13	17	7	12	11	5	8	7	8
CGGGATAAGAAAAACC	ref_5919_new	49	45	53	42	55	45	53	49	60	36
TGAGAGATCAATAGGC	ref_5919_new	193	338	293	216	279	197	316	204	307	205
ATCGCCGCACCTCGTC	ref_5919_new	29	53	35	50	56	25	57	22	54	29
AATGCGCTCAGGCCAG	ref_5919_new	40	96	44	40	77	42	73	33	74	32
GTTGGACCCGGCTGGT	ref_5919_new	0	0	0	0	0	0	0	0	0	0
CTACCAGGTTCTAAAG	ref_5919_new	178	372	263	204	379	182	378	186	389	157
GTTACATAATCGTGTA	ref_5919_new	19	11	10	10	19	16	21	13	20	12
CAACCAGGTTCTAAAG	ref_5919_new	0	0	0	0	0	0	0	0	0	0
CCACATATGTTTTGAC	ref_5919_new	6	15	16	10	9	12	20	7	22	7
CCCCGTAGGTTTAAAT	ref_5919_new	13	17	14	8	17	6	8	6	7	4
TTGTCTGAGGGTTATT	ref_5919_new	7	6	10	7	10	2	16	6	14	8
GCATCTACGTTTAGAC	ref_5919_new	0	0	0	0	0	0	0	0	0	0
GTTGACTGATCTTGCT	ref_5919_new	14	32	26	26	24	19	21	16	24	15
GGCTGGCTCGCATTTC	ref_5919_new	39	57	49	34	51	33	45	42	55	34
CTTTGGCACACTCTTT	ref_5919_new	8	25	12	14	32	15	24	12	20	7
GCGGGGGAACTTCAGT	ref_5919_new	51	75	59	54	90	39	82	61	87	55
TATTCATGGATCCTTG	ref_5919_new	17	37	28	19	31	24	28	22	36	21
GGGTGCGTTGTTACTT	ref_5919_new	0	0	0	0	0	0	0	0	0	0
AGTCAAGTAAACTTCT	ref_5919_new	25	41	29	12	38	32	37	24	41	27
GCACCTCGATAGCGGT	ref_5919_new	2	12	8	6	8	5	11	3	8	2
GGCATGCTGCTCTTCT	ref_5919_new	107	124	131	127	139	94	147	94	129	116
ATAGTTCTCGTGTTAT	alt_3426_reverse	24	34	33	22	39	20	35	18	48	27
CATGATGGGTGGTGCT	alt_3426_reverse	48	68	79	50	85	65	85	57	66	63
GAGGCATTCCGTACTG	alt_3426_reverse	9	19	7	7	17	10	21	9	16	15
GCTACATCGGGCTGTA	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
CATCAAGGGCAGCCTC	alt_3426_reverse	5	9	3	1	5	4	2	2	5	5
CCAATTCACAAGCGCG	alt_3426_reverse	66	90	101	73	81	69	128	66	78	73
GGCCGGGGTCGTTTCG	alt_3426_reverse	12	15	17	14	23	19	15	20	22	13
CCATCATTTTACCCGC	alt_3426_reverse	9	14	11	7	22	12	19	16	15	10
TGTCGGACAACCTGGA	alt_3426_reverse	2	4	13	11	11	8	3	8	8	7
TAGAACGTAACTGGGA	alt_3426_reverse	69	85	75	79	99	62	79	59	85	45
CTAAGCTTTGCTTGTA	alt_3426_reverse	2	2	0	2	1	0	0	0	0	2
TTCAAATCACGTAAGC	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCATCGTACAATA	alt_3426_reverse	13	27	19	13	15	11	23	13	31	20
TTAAGACTGTTGTTTT	alt_3426_reverse	7	16	11	6	14	4	18	8	11	6
TGCCCCCTCGTGGCCG	alt_3426_reverse	49	59	69	52	54	48	60	40	67	34
CCGTGGTAGTTGAGTT	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCCCACCGTATTT	alt_3426_reverse	12	18	13	10	12	10	14	18	14	7
TGTTAAGGTCCTTGTA	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCTCCGTTCGGGG	alt_3426_reverse	15	12	24	11	16	20	17	14	16	21
CATCCTCGGCCTTCGA	alt_3426_reverse	29	17	26	13	22	22	24	15	33	14
CCCTTCTTCCGAGTTG	alt_3426_reverse	16	18	12	20	14	10	18	11	11	8
TCTACCGGGGCATTTA	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGTCCGACTACCA	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
AAAGACAATCCGGCCG	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTGGCCTGGTTAG	alt_3426_reverse	22	23	11	21	21	15	31	14	26	11
CGCCTATGTTTGTACA	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
GGTCAATCTAATTAGC	alt_3426_reverse	22	17	28	15	19	28	27	9	22	11
GATCGCAGGATTTATG	alt_3426_reverse	47	72	74	42	57	48	76	66	80	46
GGGGTTACTACTAAAG	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
CATGGACCGCATTCTT	alt_3426_reverse	22	21	32	28	32	14	22	23	20	17
TGCTGGCGCGCGTGGG	alt_3426_reverse	32	39	44	41	55	41	41	26	51	25
TCAAACACTCCGTGGA	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
ACGGGATCATCGCTGC	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
ATACGCAATTAGCAGG	alt_3426_reverse	46	49	44	43	61	42	73	35	57	36
TGGCGCTTTTTAGTTT	alt_3426_reverse	3	7	8	5	7	2	3	0	10	4
TGGTAAACAAGGTATG	alt_3426_reverse	1	0	2	1	4	0	0	0	1	0
GGGCACCCTTTATTAC	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
CATGCTTTGGTCACGC	alt_3426_reverse	0	5	0	0	6	4	5	0	7	1
AGAGGACGCCAGTCCC	alt_3426_reverse	5	4	7	3	2	3	6	3	2	7
CTTGTTGTCTGCTGGT	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCGCCCGCCCGG	alt_3426_reverse	69	87	75	63	99	86	86	85	81	55
ATGGATCGCTCGGTCC	alt_3426_reverse	8	9	14	17	33	22	22	23	12	14
CGTCATATCCACCAAA	alt_3426_reverse	26	13	27	18	19	14	15	14	12	11
TAAGTTTTTCTCACGC	alt_3426_reverse	55	77	49	53	65	51	104	61	81	62
CTGTTGGGGGCAGACG	alt_3426_reverse	15	25	33	23	35	18	23	15	30	16
GATTACTTTCAAGTAT	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGTATTTTGGGCT	alt_3426_reverse	15	21	21	18	24	25	13	14	24	7
CGTAGTTGCCTTTGTG	alt_3426_reverse	26	28	44	32	52	41	54	32	45	20
CATAAAAGTCTGAGGG	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
ACATAAATCTCAACTT	alt_3426_reverse	2	4	1	7	5	5	2	2	2	2
CTCTTGCAAAACGCAT	alt_3426_reverse	129	205	167	139	241	115	251	134	264	140
AGAGTATCCGTATTGC	alt_3426_reverse	5	24	12	13	24	5	24	10	25	10
GCAGCGCTCCGGCGAT	alt_3426_reverse	23	31	17	18	38	18	26	19	37	17
GCTAACTCACTCTAAG	alt_3426_reverse	22	10	19	10	19	11	17	6	31	12
CCTTCGGTAGCTTGAG	alt_3426_reverse	85	110	79	69	91	54	108	58	117	63
TGTGTTCTGCTCTGCT	alt_3426_reverse	36	39	26	33	34	26	31	33	35	18
TTAGGAGTCGCTTTTT	alt_3426_reverse	17	12	9	3	12	9	13	6	10	4
GGTACTAGGCAGTCGA	alt_3426_reverse	14	34	24	22	37	21	41	26	47	14
TTGCAGGGATGGGTCT	alt_3426_reverse	15	23	19	11	11	13	19	9	11	20
CTTATATTAGTGACTG	alt_3426_reverse	2	11	5	6	4	6	4	2	12	6
TTTATTAATGGATTGG	alt_3426_reverse	8	19	13	7	25	10	18	18	16	8
TTTGTAGGATAGGTCC	alt_3426_reverse	36	57	38	37	31	34	51	31	52	28
CGGTTAGAATCATCTG	alt_3426_reverse	16	10	11	17	9	5	10	9	11	10
TGGCCTTCAAACTTTA	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCCTTTTAGTTCA	alt_3426_reverse	110	182	153	141	205	114	201	133	203	124
TACAATGCGTAGAGTG	alt_3426_reverse	23	32	24	13	32	23	33	22	45	30
CGCCTCTCGCCGAGAT	alt_3426_reverse	19	23	22	18	22	32	28	23	42	16
TGTATTTAGCCGGTGG	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCCTACGGGGGCA	alt_3426_reverse	50	85	65	59	59	53	99	49	76	41
AGGGTTAAATCTTAAT	alt_3426_reverse	11	9	16	9	4	9	17	13	15	10
TATCTTCATGCGCTGA	alt_3426_reverse	38	63	51	45	41	45	43	40	35	37
CTGCTTCGTCGCGGTC	alt_3426_reverse	139	140	158	130	154	117	168	147	155	108
TTAGACGGGTTACTTG	alt_3426_reverse	13	25	11	23	11	17	30	14	30	11
TGACGCTACTTCAGAT	alt_3426_reverse	201	232	281	175	235	214	275	195	276	198
CCATGTATAGCGGGTC	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
AATTCGTCCCCGTCGC	alt_3426_reverse	38	128	37	49	121	38	155	29	135	36
TTTTATTTGTATCATG	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
GTGAACTCCGTGGCCG	alt_3426_reverse	18	21	23	20	21	23	31	23	27	16
CACTTGGGTTACGCGC	alt_3426_reverse	148	204	210	155	231	142	214	147	247	152
GGGAAGCTAAGTCTCT	alt_3426_reverse	66	59	56	70	90	64	71	55	93	45
TGCCACTACGGTGAGA	alt_3426_reverse	109	178	127	128	188	110	201	109	171	100
GTATCAAAGGCTAAAG	alt_3426_reverse	19	37	29	19	26	24	36	27	33	36
ACATTCCAGAGTTGTG	alt_3426_reverse	57	70	52	61	107	42	79	51	97	46
ATTCCGTTCTGCGCCT	alt_3426_reverse	33	74	51	54	72	39	74	54	56	50
ATCCGAATTTTTTTGG	alt_3426_reverse	125	224	162	158	174	159	260	108	247	127
TCAATTCCCCGACCAG	alt_3426_reverse	3	11	5	1	23	6	15	9	8	1
GTGCTTGACGGGGGGG	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
TTTGACGCGCGCCAGG	alt_3426_reverse	9	11	7	15	11	14	20	10	15	7
AAGTAAAGAGAAGGGT	alt_3426_reverse	50	84	66	50	62	59	77	38	83	37
GGCTGTCCGACCGGTG	alt_3426_reverse	15	43	16	17	36	36	40	12	40	19
GGCGCTTTTTCAAGCC	alt_3426_reverse	2	9	6	4	6	12	10	3	7	7
CCCTCGGGATTTTATT	alt_3426_reverse	3	8	10	2	7	3	11	3	15	0
GCCTTCTGTCCTGAGA	alt_3426_reverse	33	55	43	25	29	23	47	43	72	30
TTCCCAAGCTTTGCTG	alt_3426_reverse	64	75	80	53	61	75	82	79	71	60
TGCGATCGTGCTCATG	alt_3426_reverse	7	8	5	7	15	12	17	6	15	9
TCCAGGACGTCAGCTT	alt_3426_reverse	33	50	43	41	36	35	48	42	61	27
GAACCTCGCGGCCTAA	alt_3426_reverse	61	47	68	54	64	44	61	57	76	55
CGTGTGGCACCACCTT	alt_3426_reverse	0	0	0	1	0	0	4	0	0	1
ACGCGGTGGTTGCTTG	alt_3426_reverse	0	0	0	0	0	0	0	0	0	0
GCATTGTCCGTACCAT	alt_3426_reverse	16	26	17	11	24	15	34	17	31	8
TTAACAGTTTACAATG	alt_3426_reverse	37	43	27	30	37	18	36	26	39	21
ATATGGAGGCCACTTA	alt_3426_reverse	5	9	6	8	1	8	4	2	8	0
TTTAAGTTCCACCGCT	alt_3426_reverse	7	10	10	9	9	8	16	9	11	10
CCCTTACAGGTCAGGC	alt_3426_reverse	77	107	87	74	122	70	112	72	137	70
GATCACGATGTTGGCA	alt_5572_RC	133	123	128	110	169	128	185	124	160	95
ATGCTATGGACCGCTC	alt_5572_RC	54	69	46	46	46	49	63	49	72	36
AGCCACTCTTTTGTTT	alt_5572_RC	27	38	20	18	27	22	46	21	24	13
GTAATAAGTCGCTGCC	alt_5572_RC	5	9	12	14	9	4	7	3	8	7
TTCGGATTTGTATGGG	alt_5572_RC	3	2	9	11	8	2	4	3	4	5
ACATACGCACGGCGAA	alt_5572_RC	8	14	10	12	23	10	17	9	12	13
AATCTAGGTACTGTCC	alt_5572_RC	6	20	9	8	18	13	23	17	23	14
GTCTACTGGTCGTGCA	alt_5572_RC	4	21	2	9	25	5	25	3	28	9
AGATCGTGCGCTCCAT	alt_5572_RC	15	14	14	8	10	13	12	10	14	12
TGGATTGGATTCGCCG	alt_5572_RC	42	43	41	39	65	45	57	37	54	37
TGCCTTAGGAACGTCA	alt_5572_RC	4	9	13	10	14	4	6	4	6	10
CATGACTCAACATGCG	alt_5572_RC	14	22	21	19	14	19	13	25	27	11
CCCGTACTATCCGTGC	alt_5572_RC	31	91	43	25	86	28	93	33	104	23
GGCGCCCTCACTAAAA	alt_5572_RC	16	9	12	5	14	10	16	7	9	10
GATGCGTATCTTCAGA	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
TAGTCTTGCAACTCGG	alt_5572_RC	30	26	36	23	36	19	44	24	42	16
GCGATATTCAGTATAT	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CGGTGTTCGGTGTGCC	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
TTCGCATCAGCGCTCT	alt_5572_RC	66	111	92	79	61	64	81	38	90	54
TCCCCCTCCCCTATCC	alt_5572_RC	12	13	6	13	16	11	16	11	17	7
ACTTCTGGACTGATCT	alt_5572_RC	36	57	46	46	53	50	39	41	51	35
AGAGTAACCAGAGAGT	alt_5572_RC	44	45	56	40	45	28	54	29	52	44
ATTCAAATCCCAAGTG	alt_5572_RC	7	9	12	6	10	8	2	4	8	8
TAATCCGGTAATTTTT	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
ACCCGGCACAAGTTAT	alt_5572_RC	7	14	4	11	13	13	10	9	10	13
AGGTACCCTTATTTCA	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CTGTGTCTGTGAGAAC	alt_5572_RC	13	21	20	12	32	11	26	16	27	8
CGATGGCCAGGTTCGT	alt_5572_RC	22	26	23	13	21	10	23	10	16	16
ACCTGTCTCTCCTGGC	alt_5572_RC	4	22	6	5	29	7	26	6	29	5
TTTCACGTAACGTCTC	alt_5572_RC	147	172	157	116	164	119	139	109	161	119
GTGGTAATCCCCAGCG	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CGTCTAGATATCTTCA	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CCGAGATGTATATCTT	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTTTCACCTAGT	alt_5572_RC	2	7	8	3	2	2	5	3	9	6
TACCGACCACACGCTA	alt_5572_RC	15	19	13	10	15	6	7	7	21	6
CCGCATTGACGGCTTG	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
AGGATCGAGTTATTTC	alt_5572_RC	8	16	10	14	8	15	12	9	11	9
AGTCTCAGCACGTCTG	alt_5572_RC	17	41	25	30	56	28	36	22	54	28
GTACTGCGAGGTGACC	alt_5572_RC	44	52	55	45	52	39	48	34	52	28
ACTCATTGATAATTCT	alt_5572_RC	3	11	11	7	8	9	3	5	12	10
CCCAAATAGGGTTATG	alt_5572_RC	67	75	47	64	73	66	92	59	93	50
AATGTCATATCGCTGC	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
TACACCAATGTTAATA	alt_5572_RC	7	6	7	7	9	9	13	11	5	7
AGGCGCTTCGTTGAAC	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CAACTGGTTTAGTCAG	alt_5572_RC	9	6	22	8	9	8	16	6	10	9
GCTGTTCAAGTCGACG	alt_5572_RC	26	23	27	18	25	20	23	21	23	13
TGTCGTTATTGAGGTT	alt_5572_RC	13	14	12	10	14	6	14	13	15	12
TACTAGCGCTATTCTT	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
AGGTCTGATCTGTATC	alt_5572_RC	19	12	18	20	37	8	30	13	25	9
GTCTAGCAAAGTTTTT	alt_5572_RC	8	31	10	8	42	12	23	15	26	8
ACGTCCGGCGGACTTC	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
ACTGTACTATCCCAGA	alt_5572_RC	17	21	15	14	18	15	32	10	39	15
ATCCGTGTAGACAGAG	alt_5572_RC	2	3	5	0	2	2	4	2	1	3
AAATGATACAGGGTCA	alt_5572_RC	10	3	2	6	10	8	8	5	3	9
GTGCCTTGCGACGTAA	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CATAGTATTTAAAAAC	alt_5572_RC	68	68	67	70	79	71	97	57	73	51
CAAGGTTGTGTCCCAC	alt_5572_RC	7	19	17	16	15	6	17	6	11	13
CTACCTTTCCTAATTC	alt_5572_RC	107	189	137	114	239	101	216	111	247	83
TGCGACGCGTCTGGAG	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
GCTCACTTAGGATCGT	alt_5572_RC	10	12	12	11	18	13	14	14	26	16
TGTTCCCTGCGTGGTA	alt_5572_RC	63	95	88	71	108	69	103	72	102	63
TTCTGTATGGTGGAAG	alt_5572_RC	4	9	6	4	3	4	7	4	13	5
GTCCGAGCCCGGTACT	alt_5572_RC	16	25	15	18	25	14	23	18	22	14
TCTCATGTGAAATTCT	alt_5572_RC	96	84	124	105	84	69	108	93	107	80
GGGATATTCATCGGAA	alt_5572_RC	13	7	7	9	16	4	13	6	11	6
ATACCAGGCTTAGCAC	alt_5572_RC	39	82	42	23	94	44	75	36	82	31
CAGCAGAAGAGGGTCT	alt_5572_RC	5	10	8	7	4	6	12	9	13	4
TTTACCTCTTCCCTAG	alt_5572_RC	21	20	23	13	22	10	25	15	18	14
ATAGAAGGGGGTCGTG	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CAAGGAGAAATTTGCT	alt_5572_RC	15	18	16	18	21	9	19	15	12	21
TCTTGATACCTTATTA	alt_5572_RC	29	27	29	27	35	22	53	21	48	19
AGTCTTTCTTGCCGCG	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
TTTGTTTTGCACGACG	alt_5572_RC	16	12	10	11	11	13	11	15	21	7
AATGACTGCAGCATTG	alt_5572_RC	10	7	17	8	16	11	9	9	8	6
GGGGCCTCCACGTCAC	alt_5572_RC	13	10	8	6	17	6	10	9	10	7
AGCGAATATTTGGAGT	alt_5572_RC	27	54	46	30	43	38	75	32	53	30
CAGGGGTCGCTGGGTA	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTGTGTTTCAGG	alt_5572_RC	0	5	2	2	4	7	5	3	1	6
TTGTCTTAGTATGGAC	alt_5572_RC	12	26	11	13	21	23	22	13	24	9
AAAGCTGACGTACGAG	alt_5572_RC	84	98	92	69	81	81	108	76	94	58
TTGTTTCAATCGAAAG	alt_5572_RC	17	27	37	20	32	22	22	18	32	31
GGCGTAATCTAACGTG	alt_5572_RC	6	1	7	1	3	1	1	3	3	1
GCCTTTCGCTCTCTTG	alt_5572_RC	5	4	10	4	8	12	13	4	6	9
ATCCATGCTCGATCGC	alt_5572_RC	195	215	248	185	222	180	219	195	243	162
TTAAGGGCGTATCAAT	alt_5572_RC	8	6	7	6	4	3	2	6	7	4
CCTACGGCTAACTATA	alt_5572_RC	10	15	8	1	19	3	10	2	10	5
TCCTTTACATGTATGC	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
TCTCTCGGCTCGTTCG	alt_5572_RC	55	77	49	67	61	62	79	52	63	37
GCTTACTTATAAGTTG	alt_5572_RC	4	11	3	2	10	7	8	4	15	7
CTAGTAAATCCCATTC	alt_5572_RC	17	23	25	21	43	20	31	17	39	17
GTTTCAGGATTCCCAC	alt_5572_RC	57	100	84	64	89	78	95	66	82	77
AGCATACAGGTAGGGT	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
GTTCTCACAGGTCCCG	alt_5572_RC	12	6	7	11	7	11	9	12	7	10
ATTACTCACATGCGAA	alt_5572_RC	10	12	10	4	19	7	11	1	14	9
GGTCCGGTCCTAGGCC	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
TTCCTGGATGGATATT	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
GTTTCCGGCATCGTTT	alt_5572_RC	13	23	22	14	20	12	24	10	23	16
CTGGTTGAGAACCCCA	alt_5572_RC	3	7	6	2	7	12	6	2	4	0
TACTCGTTGAACAGAC	alt_5572_RC	99	167	145	126	184	128	165	106	196	102
AAGGGGTTCTTCCTTT	alt_5572_RC	13	32	41	28	42	36	39	22	35	22
CAGGATCATATGCAAG	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
TCTCCTCAAAAATACT	alt_5572_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCGACATTCAGA	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
GTCAAGGTCTGTTCCC	ref_3673_upstream	28	26	31	24	40	27	38	34	33	32
CGCTATTATTCACGTT	ref_3673_upstream	8	19	8	10	11	8	7	7	13	6
AGTTCCATTAACTACG	ref_3673_upstream	76	89	77	82	105	66	75	76	104	72
CGGTTTGCACTTGGCA	ref_3673_upstream	19	26	27	14	19	15	25	16	20	10
CACCGGTCACCCACGA	ref_3673_upstream	32	79	26	22	80	24	68	22	80	24
GCACACTGGACATCCG	ref_3673_upstream	14	14	7	16	14	9	12	9	14	7
TTGAAGTCGTTCTTCG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
AACGGCAACTTTCGCG	ref_3673_upstream	26	24	31	37	23	37	33	27	30	28
CGCTGTGTCGCATCCC	ref_3673_upstream	38	48	31	26	38	38	32	39	60	36
GGCACGAGTCTTTGTC	ref_3673_upstream	6	2	5	7	6	3	6	2	4	6
TCAAAGTATGCATGTG	ref_3673_upstream	68	115	91	60	111	65	102	95	137	64
AACCGGACGGACGAGA	ref_3673_upstream	43	47	58	53	59	55	45	46	43	33
GGATGGCGAGGTCACT	ref_3673_upstream	77	95	102	81	87	60	98	81	103	72
GTAGTTACGTATACTG	ref_3673_upstream	6	18	9	6	12	9	7	4	10	5
TTATATCAGTCATGTG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TCGCCTACATGAACTT	ref_3673_upstream	10	17	18	12	26	10	30	10	39	13
AGTACAGTTCGTCTCC	ref_3673_upstream	2	4	9	3	10	3	11	3	9	8
AGGATGCGATCTATAT	ref_3673_upstream	22	18	23	14	30	18	21	14	20	23
CTTTACTAAACATGTC	ref_3673_upstream	10	15	14	22	13	14	15	13	16	10
GTGTTCTTCACTGAGG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
AAAGTCATCGATTCGG	ref_3673_upstream	114	131	153	118	111	131	137	125	141	103
TACTTCGCCCTGCATC	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
CTATCCACCCTACCGA	ref_3673_upstream	23	14	11	17	5	4	6	15	13	12
ACACCCATAAAAAACC	ref_3673_upstream	88	73	86	71	63	64	93	62	74	61
TGTCGCATCCATGGTA	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
CATTGAGTTAGGGCAT	ref_3673_upstream	5	5	12	8	9	8	14	7	10	1
GCATAGGTCTAAAACT	ref_3673_upstream	54	70	71	65	56	43	57	45	78	49
TCCCCCTCAGGCAAAA	ref_3673_upstream	60	44	53	49	53	42	43	36	52	45
GCAGTTGGCCCGATGC	ref_3673_upstream	13	9	7	10	13	10	19	13	12	9
CCTCTTACGGGCGTCC	ref_3673_upstream	59	67	80	50	54	60	82	54	77	46
TATTAATGATTGATCT	ref_3673_upstream	22	21	23	9	40	29	24	21	25	19
TACTTACCTACGAGTT	ref_3673_upstream	4	16	7	4	25	2	20	4	31	5
TGGTACCCCTTCTGGG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
GCGCCTGGCTCGGAGG	ref_3673_upstream	101	125	132	93	120	93	115	82	132	67
CCGTCTCTCGCGTATT	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
GATGCGTTATATCATT	ref_3673_upstream	150	160	195	156	167	138	178	126	194	135
AGGGGAACTGCGCTAT	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGAGCTCCCTTGT	ref_3673_upstream	17	15	28	18	16	8	18	15	16	19
GCCTCCGCCTAGTGTA	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTGTGTGTTTATA	ref_3673_upstream	43	62	60	53	59	43	91	43	67	31
CCTAGTATTGCGTTTG	ref_3673_upstream	16	30	22	24	37	22	33	27	51	19
TGTTCGAAGTCTCTAC	ref_3673_upstream	43	53	34	46	46	23	40	26	47	34
TACAGTTTAACGCGCG	ref_3673_upstream	65	98	91	56	88	53	70	66	86	50
AATCTTCGAGGTGTCA	ref_3673_upstream	8	9	11	8	4	3	9	12	9	7
GAGTATTGGCTTCCTG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGGTTTTTCTCTC	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCTCTCCTTAAGA	ref_3673_upstream	70	92	85	85	93	66	87	71	89	63
GCAACTTACTCGGTAC	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TAATCCTTCTCTCTGG	ref_3673_upstream	36	48	53	37	45	28	40	37	49	44
TGGGCTGAGGCATCAA	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TAATGTACTGGGCCTA	ref_3673_upstream	42	37	44	37	41	25	51	39	47	44
ACAAAAGATTGGGCTA	ref_3673_upstream	38	33	48	47	32	35	50	33	32	37
TCCACAGTAAAATTCG	ref_3673_upstream	112	95	107	120	110	82	124	89	131	56
ACCGCCTTAGTCTAAA	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TGGCAACACAGGGACG	ref_3673_upstream	85	75	107	77	90	93	91	94	99	67
GAAGGTTTTGCTTTTC	ref_3673_upstream	18	20	23	13	17	17	21	19	18	17
GTACTCTCGGTCTAGG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGCCTTCAGGCAA	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TCACTAAAAGTTCTTC	ref_3673_upstream	11	14	11	6	11	9	9	11	14	3
ACGCCCCCTGGCCGTT	ref_3673_upstream	0	22	2	1	28	4	20	0	32	5
TGTGCAGCTGGGGATG	ref_3673_upstream	28	25	41	28	32	35	28	25	47	17
TTTCCATTGGTTATTG	ref_3673_upstream	8	6	5	7	12	10	6	10	14	11
TTCAGCAGGTCTCCGT	ref_3673_upstream	11	15	24	18	15	13	11	15	20	8
CTCCTCGGTGTATGTA	ref_3673_upstream	28	20	23	16	30	20	27	15	27	13
AAGCACCTGGTATCAC	ref_3673_upstream	21	40	39	37	30	26	32	25	31	22
ATGATTTTTACTGTCG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TACGAGGATGAGCCTT	ref_3673_upstream	217	209	204	192	201	164	208	165	205	166
ACCAGGTGTAATCTCA	ref_3673_upstream	1	5	1	3	4	0	2	4	2	3
TCCCTCTCCGTGGGTT	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
GCTGTGAGGGGGAAAG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TCAAGGTCTTCGACCG	ref_3673_upstream	31	38	41	41	42	34	53	37	49	37
TCTAGGACGTGCTGCA	ref_3673_upstream	42	53	46	43	45	41	48	38	55	30
TGTCGCACCTTCTTTT	ref_3673_upstream	41	36	56	68	50	49	44	36	38	43
CAGTTGGGACGAAAGG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
TCTAACAGATTGAATT	ref_3673_upstream	32	39	43	46	34	48	50	43	53	43
CGAGCTCGATTAGTTG	ref_3673_upstream	44	49	58	64	58	43	62	51	54	39
TTATACTCGGCTCTTG	ref_3673_upstream	23	34	29	22	23	27	25	10	36	23
GTCTAGTTGCGGAGCG	ref_3673_upstream	0	0	1	0	1	1	1	0	2	0
GGAACTTGATCTTATA	ref_3673_upstream	34	29	45	29	42	36	29	41	43	24
TTTTAATTGTGCACCA	ref_3673_upstream	4	9	11	8	16	7	4	1	6	4
CTGAGGCGAGTACTGT	ref_3673_upstream	10	11	16	6	18	11	19	8	10	6
ACGTTAAGCTTTTGTT	ref_3673_upstream	13	13	10	4	13	17	4	6	31	14
GACCCAGATATAAGTA	ref_3673_upstream	73	90	114	93	99	77	136	74	108	87
TTCACTTCAATGGCAA	ref_3673_upstream	46	48	41	39	45	44	43	32	41	40
ATTGGACTTTGGAAGG	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCGCTTCATCTTA	ref_3673_upstream	0	0	0	0	0	0	0	0	0	0
GTGGATCCAGCGGTTT	ref_3673_upstream	10	11	17	4	13	9	8	9	19	6
TGGTTTCTATGGTCGT	ref_3673_upstream	37	30	38	45	44	42	39	36	42	39
TTGAATCGTTTGCCAG	ref_3673_upstream	51	66	84	60	60	48	79	61	59	56
TTGCTTAGGACAGCGG	alt_1522_upstream	10	11	18	12	10	13	15	11	18	19
AGCATTGACGCTCTGG	alt_1522_upstream	22	20	27	36	21	31	28	18	27	21
GAGTACTGCTTGGCGG	alt_1522_upstream	15	11	16	11	17	13	13	18	13	16
ATCCCCCCGCCGAGTC	alt_1522_upstream	6	41	14	6	51	8	55	9	62	10
ACATTTCCAGCACATA	alt_1522_upstream	0	0	0	0	0	0	1	0	0	0
TCATTTCCAGCACATA	alt_1522_upstream	602	564	762	607	520	610	672	434	708	502
GGCATTACGTTGGGGT	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGGGAGCCAGTTG	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
GGAATAGTACTATCGC	alt_1522_upstream	12	22	11	18	18	8	18	12	18	17
GTTCGCCCTTGAAATG	alt_1522_upstream	44	57	51	55	65	51	55	34	56	58
TGGATTCGTGGTGCTA	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
GGGTACTCTGTATGTC	alt_1522_upstream	32	31	51	31	39	34	25	31	40	29
TGGACCACGTATTTGT	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
TTCCCTACGCTAAACA	alt_1522_upstream	57	66	47	49	81	48	57	55	74	48
AAATGTACGCGCATTG	alt_1522_upstream	7	6	5	2	10	7	12	7	7	6
ATGCGTCATCGTGTTC	alt_1522_upstream	47	60	66	60	56	66	60	63	57	52
CTATCTTTTGTCGAAA	alt_1522_upstream	41	12	27	28	19	11	30	16	14	25
CCGGTCTGCCCAGTAC	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
TGGTAGTTGTCGGATC	alt_1522_upstream	29	38	38	28	17	31	30	22	48	21
TTCTTGCAATGGTAGC	alt_1522_upstream	9	7	5	11	9	2	3	5	10	4
CTCCAGTAGACTCATT	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
AGGGGGTACGTACCGA	alt_1522_upstream	21	35	19	14	34	22	40	22	46	11
CTCGGCATCAGGGCTC	alt_1522_upstream	40	48	56	44	36	33	38	41	54	46
CTTCGCACCTTCTTAC	alt_1522_upstream	10	36	17	14	28	13	37	24	35	11
TTCATTTCTTTATTCG	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
TCTCATTGGTTTCCTC	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTCCCGGTTTACG	alt_1522_upstream	10	16	21	12	21	11	13	15	11	12
TCCTTGGTTTCAAAGG	alt_1522_upstream	49	44	42	46	47	39	43	43	48	48
AGTACCATACGTGGGA	alt_1522_upstream	22	22	28	25	29	25	35	16	37	17
CGCCAGTTTGGGTTAG	alt_1522_upstream	4	6	9	8	7	6	5	5	14	9
TTTACGCCTGGAGTCT	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTTGCGTAGGCGT	alt_1522_upstream	27	51	26	42	46	36	44	37	43	34
GCCTACGTCCAGCCCC	alt_1522_upstream	44	51	45	47	70	33	63	41	51	45
GCTTCGCGACTGTCCT	alt_1522_upstream	78	67	83	77	76	74	89	46	81	77
TATTTTGATCTGATCT	alt_1522_upstream	15	17	21	23	21	20	28	20	23	18
TATATAGGGTGTTGTC	alt_1522_upstream	80	77	109	89	89	72	114	66	97	63
GGGAAGCGTTGTCTCG	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGTGCTAGTGTTT	alt_1522_upstream	27	40	21	21	17	27	20	16	30	17
GTCCTGGGCCCTTGCA	alt_1522_upstream	5	1	4	4	3	5	5	5	2	1
GCACATATTTAGACTT	alt_1522_upstream	36	68	60	65	81	43	70	42	68	52
TACTTCTGACTACGAA	alt_1522_upstream	9	12	6	6	10	8	8	12	6	5
GGTTTCCACTAACTAG	alt_1522_upstream	52	58	46	48	65	48	52	53	55	39
GAGTTACACTTTGTCT	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
GACATTGACTTTGTGC	alt_1522_upstream	14	30	31	16	21	19	27	17	33	14
CATAATCCATATGTAT	alt_1522_upstream	0	0	0	0	0	0	0	0	0	0
AGATACGCAACCTCTG	alt_1522_upstream	100	98	82	93	101	68	102	73	79	65
TAAATGAATATTTAGA	alt_1522_upstream	13	22	29	21	20	13	14	22	20	23
TTTGTTGTGCCGTATC	alt_1522_upstream	23	22	26	20	12	17	29	30	30	16
CGCGTTACTGTCATTT	alt_1522_upstream	46	65	72	58	53	73	69	44	85	47
CGTCATGTTTTCCGAA	alt_4574_upstream	6	18	4	10	13	7	14	6	3	7
CCGCCCGTTCTTTGAT	alt_4574_upstream	7	24	15	15	23	16	8	14	27	7
CTGAGGCGTAAGTGGC	alt_4574_upstream	27	61	19	29	51	28	51	22	56	25
CTGCTAGTAGTAACAT	alt_4574_upstream	19	48	40	39	60	31	51	37	58	21
GCTTAGCCCTTGAACC	alt_4574_upstream	4	11	6	6	6	1	4	2	12	4
GTCTCGAGGCTATAAC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CTGACACCTGCAGTAG	alt_4574_upstream	9	44	28	31	62	16	48	21	73	21
TGGCCTCTGTCAAAGA	alt_4574_upstream	4	11	12	9	27	9	17	8	12	10
TGATCGCGAAATTGAT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGCTCATATGCAA	alt_4574_upstream	16	21	15	21	24	20	23	5	22	10
ACTAACAGGCTATGAC	alt_4574_upstream	58	82	64	64	75	54	125	33	86	40
TTCGGTTTCACAGCTG	alt_4574_upstream	10	5	4	6	7	2	8	3	8	3
ACGGTCGCTTCGGTAT	alt_4574_upstream	14	14	16	13	24	6	30	12	23	17
TACTTAAAGTTCCATA	alt_4574_upstream	6	16	12	3	17	9	11	13	14	2
GCCCGGTTTTTCTTCC	alt_4574_upstream	24	46	23	22	37	21	33	28	42	25
GGGTCAGTCACAATAC	alt_4574_upstream	42	55	37	36	60	40	59	32	81	20
AAGCCCTCACCCGTTG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CGCAGGTCAGGTAGTA	alt_4574_upstream	8	7	11	6	4	7	12	1	6	2
TTTGTTAGCAGTACAA	alt_4574_upstream	36	64	47	45	52	34	73	31	54	36
TAAGACTAAGGCCGAC	alt_4574_upstream	7	6	10	7	6	6	16	4	12	7
CCGTCCGCATTCTGTG	alt_4574_upstream	27	39	16	18	32	20	34	17	43	8
CAAGAGAATTCTCATT	alt_4574_upstream	16	21	14	9	25	8	21	14	14	12
CGATCTGTGGGATTCC	alt_4574_upstream	20	31	32	10	36	14	35	12	24	15
AGGTTCCACACATTTG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TGAGCGCAATGTCCAT	alt_4574_upstream	10	17	18	13	18	15	30	10	17	5
AGGAAGTACGCTTAGG	alt_4574_upstream	30	40	26	23	32	21	35	19	34	14
GACGAAACTCTGGCCG	alt_4574_upstream	15	11	12	4	16	9	16	2	9	9
CTAAGGCTATGGCTAT	alt_4574_upstream	36	47	37	38	51	34	66	41	65	38
CCCGCGTTCGGTTATC	alt_4574_upstream	20	36	18	6	16	16	29	19	25	9
ATGTCATTGTTGATAA	alt_4574_upstream	3	8	4	3	5	5	4	2	4	8
AATCCACGTAGTGGTT	alt_4574_upstream	15	19	17	11	31	17	27	21	24	18
GCGGGCGTCAGATCAC	alt_4574_upstream	86	98	97	99	98	86	124	83	110	72
TCGCCGGATTTTAAGC	alt_4574_upstream	52	72	51	45	91	37	74	53	100	41
TTCTAGCATATCCTCT	alt_4574_upstream	17	13	16	12	21	12	34	14	27	14
CTCCTTCTATAGGGGC	alt_4574_upstream	12	20	9	13	14	9	16	9	14	7
TGGTGATGTTTCACCC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GGTCTCGTCCTTCAAA	alt_4574_upstream	31	26	37	37	38	26	37	38	39	31
AGCCGTATTCATCCGC	alt_4574_upstream	3	4	1	2	10	3	7	2	2	1
TGATTGCATTTTTGCG	alt_4574_upstream	25	30	19	15	42	16	34	26	42	18
CTAACCCAAGTTTTAA	alt_4574_upstream	3	1	7	3	6	6	12	2	17	3
TTAATAATACTTTCGC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CGGAAATCAGGTCCCT	alt_4574_upstream	9	10	4	11	12	6	9	8	10	3
GGTTGTCTTCGTCGGT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGCCTCCTTTAAG	alt_4574_upstream	5	9	9	3	9	6	15	10	12	6
AAGTTCCCCTGGTTTA	alt_4574_upstream	32	45	36	33	45	28	62	30	61	25
GGAATGCTTTGAGTCC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GGGTACCGCTTTGGTA	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GTATCCAGATGCTTCC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTCGTACCCTGTT	alt_4574_upstream	11	28	11	8	14	4	12	5	22	7
CTATATCGTACCAATG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CTATATGTTGGCGTTC	alt_4574_upstream	27	38	31	29	41	28	52	28	40	26
CGGCGACGTCTACAGT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAGGACTTACCTT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TCGACAAATCGCTGCC	alt_4574_upstream	9	18	26	9	23	13	24	14	22	10
GTCCATCTGTCATGCA	alt_4574_upstream	25	30	21	15	24	14	25	15	33	6
CGCTTGCCGACTGAGT	alt_4574_upstream	6	21	5	4	29	3	20	4	22	4
TTGTCCAGTATTCATT	alt_4574_upstream	71	139	110	82	147	65	155	92	163	76
TGCGACTCGTCTCGAT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GCAACGCTCGCGTTTC	alt_4574_upstream	22	49	43	25	59	24	50	25	68	21
AGTCCGTGGCTTATTG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
AGCATTGGGGTCCGTT	alt_4574_upstream	124	204	144	127	211	118	195	132	224	124
GAATTTTTCGTAGCTT	alt_4574_upstream	21	15	11	16	20	16	34	12	16	25
ATTTTATTACACTCAG	alt_4574_upstream	39	165	73	60	159	45	120	60	165	57
ATATTGGACTACCAGA	alt_4574_upstream	26	70	33	36	56	26	63	22	54	22
TATTTATTATTGTGCT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
AGAATGCGATAGCGGG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GTTATTGGGTGTTACT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTTTACTTCTTGA	alt_4574_upstream	15	22	15	15	19	15	25	16	18	12
TAGTGTTCCTAATGTG	alt_4574_upstream	28	50	31	25	46	25	52	16	50	23
TTTCGAATTTCTGGGA	alt_4574_upstream	28	28	27	33	36	29	27	14	35	18
GAAAAATGTTTGCCAT	alt_4574_upstream	7	20	16	18	21	15	26	10	32	12
AAGACTAGAAAGTTCG	alt_4574_upstream	7	10	13	7	13	8	15	7	23	5
TGCCAATTCTTTCGCA	alt_4574_upstream	40	77	44	36	76	44	58	42	78	30
CTCGCCGATGATACTG	alt_4574_upstream	6	8	6	6	16	1	16	3	15	4
AGAGGCTTCCCCGTCG	alt_4574_upstream	3	26	3	5	29	3	21	2	38	3
TGATGCCAGTCTATTT	alt_4574_upstream	27	49	24	20	42	10	31	14	43	19
CTCCAATGCTCCATTA	alt_4574_upstream	4	10	8	8	12	8	10	7	13	11
TTTTTGTCGTTTAGCT	alt_4574_upstream	22	44	23	23	30	24	38	26	39	17
CCACTAGAATACGAGG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAGCCCTTCCTAG	alt_4574_upstream	12	24	18	15	26	18	34	10	38	17
AGAGACCATTCGCTCG	alt_4574_upstream	31	51	42	39	51	36	61	33	73	38
TAAGTACTGTGGTCGC	alt_4574_upstream	9	11	12	13	9	11	22	7	12	5
AGACTATCCCCTGGGC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TCCAAGTTGTATGTGG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
ATGAACTTCCGTGACC	alt_4574_upstream	25	39	31	28	43	23	28	36	31	31
CATCGACAGCGTTGGC	alt_4574_upstream	11	25	18	10	31	17	25	19	16	7
CAGGAGGACCGATCAA	alt_4574_upstream	3	11	4	5	22	9	9	8	11	8
CTTCTCCGGAGTTTCA	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GGCCTAAATTCCTGGA	alt_4574_upstream	5	15	13	9	10	8	21	10	17	7
AAGCGCAAGGGACATA	alt_4574_upstream	2	6	4	7	10	4	7	2	12	5
CCAGTGCTGTCTCCCG	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CCTAGCAAGTAAGGTC	alt_4574_upstream	13	13	4	7	13	4	14	6	19	9
GTATGTTATCCATTGT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TATCAGGTCTAGATCG	alt_4574_upstream	11	7	6	10	8	4	11	7	18	8
CAATATCTATTAGGTT	alt_4574_upstream	15	17	13	13	28	10	27	6	22	13
TTAGATTGCCAATGAG	alt_4574_upstream	9	16	11	5	13	5	23	9	11	4
TCTGCGTTTACCCCCG	alt_4574_upstream	55	86	62	65	93	50	100	48	76	57
GAGGGTTCGGAGATAG	alt_4574_upstream	39	68	50	42	90	54	57	43	75	47
TGGTTCACCGGTTGGT	alt_4574_upstream	9	16	19	11	22	15	21	8	19	4
CATACCTCTTCTAGCA	alt_4574_upstream	0	6	4	2	2	3	3	4	1	2
CAGACATACGTGGATC	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGATGCCAATTTT	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
GCCCGACTGGAGTGAA	alt_4574_upstream	20	31	15	24	27	8	29	9	30	14
CTATCAAACGCATTTG	alt_4574_upstream	9	21	21	9	20	7	21	11	16	11
GGCCACCTCCGATTGG	alt_4574_upstream	11	8	5	7	16	10	19	6	14	6
ATCGTACTGAGTCGAG	alt_4574_upstream	12	31	19	16	18	10	22	14	12	14
GAATTTGTTGATGAAT	alt_4574_upstream	5	1	2	3	3	2	8	2	5	3
GATCGCGTTGCGGCCG	alt_4574_upstream	4	1	3	2	6	5	4	2	5	8
CGCTCCGAAATTTCCC	alt_4574_upstream	8	16	13	7	16	8	14	11	8	18
GCGGGTAGCATTGGGG	alt_4574_upstream	15	31	16	16	23	20	18	11	29	14
GGTATCGTCGGTTCTA	alt_4574_upstream	0	0	0	0	0	0	0	0	0	0
TATTGGTTCGTATTTT	alt_4574_upstream	15	18	17	10	15	15	17	21	17	11
TGCAGCTTTGCCTCTA	ref_2378_RC	12	12	26	8	28	17	14	9	14	11
GCTGCTTCAGCTCGAA	ref_2378_RC	0	5	2	8	2	2	6	2	4	3
ACGCAGTATGCCACCT	ref_2378_RC	59	76	51	40	66	63	67	41	72	43
CTTTCGGCCTCTTTGA	ref_2378_RC	14	22	29	18	43	12	38	9	33	17
TAATTTTAGTCGAAAG	ref_2378_RC	34	30	37	32	25	23	31	13	34	26
AGTCTTTTGTCCGTGT	ref_2378_RC	52	57	54	54	59	54	61	54	66	56
GTGAGCTTGGACAATT	ref_2378_RC	27	31	35	34	30	45	28	23	22	20
CTCCCCAGATGCATTC	ref_2378_RC	25	77	24	20	85	15	77	17	93	20
TCAGCCGGTATCGATC	ref_2378_RC	16	55	29	20	61	18	63	19	55	27
GTTCGCCTTGGCCCAA	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
GCCTAGTTCCCGCAGA	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
GCGGTCGGTTAACAGT	ref_2378_RC	7	22	6	10	21	6	16	3	15	3
TAAGCTGACTTAAGAT	ref_2378_RC	172	159	159	151	165	147	169	140	169	112
CCTTATTGACCTATGG	ref_2378_RC	15	14	15	11	13	11	12	7	15	6
TAATGTTTGGTCAGCT	ref_2378_RC	7	6	10	4	8	9	6	5	2	3
GTCTAGTACGGATCCG	ref_2378_RC	18	39	32	25	30	19	36	22	28	21
GTATCATTCTTTTCAT	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
CTACCAAACAAACTAA	ref_2378_RC	63	119	91	77	120	102	91	70	157	88
GCTAGCGATCTCGACG	ref_2378_RC	31	32	33	28	30	28	34	17	29	29
GACAGACCATCCTTCC	ref_2378_RC	17	29	31	16	25	26	24	16	21	29
ATACGGTCAGAGTTAT	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
TGTTCTATTGTTTATA	ref_2378_RC	205	265	243	236	251	203	261	158	287	190
CGTTTTTTCTTGCGCG	ref_2378_RC	24	35	31	23	27	35	36	18	27	18
GGGCGAATTACCAACA	ref_2378_RC	11	13	17	13	16	12	19	9	22	15
TTTTGCTGTCACTGTC	ref_2378_RC	6	9	8	7	10	8	8	5	7	13
GGGAATCTTTACGGAG	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
TATTTAGTTCCCATGT	ref_2378_RC	24	18	29	17	17	16	27	19	37	19
TCAGTCGTTCGTAAAC	ref_2378_RC	31	79	51	36	67	22	54	24	73	31
TGCAAAGGGCTATCAG	ref_2378_RC	71	67	90	66	87	70	72	53	88	69
GTGGTCTTATCCGGAA	ref_2378_RC	11	10	34	11	14	18	22	20	20	15
GCAGCGCTCGGGAGCC	ref_2378_RC	24	26	26	34	24	21	28	23	30	11
GCGTACTGCGTTTCAC	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
GATTGTGACATGATTG	ref_2378_RC	26	31	25	23	24	16	22	23	27	28
AAGCACCGGTGGGGAC	ref_2378_RC	124	130	131	124	134	116	137	119	152	121
AAATCCTTGGGTTTTA	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
AAATTGCCGATCTTAT	ref_2378_RC	19	28	28	27	30	24	18	23	38	9
AGAGATCTACATCATT	ref_2378_RC	16	19	26	25	25	18	29	20	36	11
TAGCGGTTCCTTCTCT	ref_2378_RC	12	23	13	4	16	6	12	13	15	13
GAGTTCTTGATCCACT	ref_2378_RC	96	78	105	70	86	74	102	61	111	69
TCTGTCCACTTTCGAT	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
GATCGGGTCTACTGTC	ref_2378_RC	7	11	6	2	3	5	6	5	12	3
CCGAATTTTGTGATAC	ref_2378_RC	8	7	8	6	6	2	6	3	10	4
AGTCCCGTCTTGTTAG	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
TGTAACTCAGACCTCG	ref_2378_RC	22	39	35	32	28	24	30	25	48	17
CCGAGTCAGCTGCAAA	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
TCCACGATACTGGGGT	ref_2378_RC	8	6	4	10	9	8	7	6	10	0
TCAATTGGCGGCTTTG	ref_2378_RC	17	9	10	14	11	9	12	18	17	22
ACGTCTCCCCCTCTAC	ref_2378_RC	126	153	151	137	156	129	169	122	206	108
TTTATTATGCTAATTG	ref_2378_RC	52	17	66	56	19	50	23	46	20	38
TACTTCTTCGGCCTTC	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
TTTTTCTTGAAAATTT	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
AGGTCGTCTATACTTT	ref_2378_RC	22	32	35	21	33	25	43	29	28	29
AGTTCGACTCTAAGTC	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
GTTCCAGTACGTGCCG	ref_2378_RC	6	9	7	5	9	7	11	9	9	2
GTCCGTGTTATTTTCC	ref_2378_RC	15	12	25	17	22	18	21	12	11	13
ACTGAGAAATTCGGGG	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
ATCTCCGATTTAGTCC	ref_2378_RC	0	0	0	0	0	0	0	0	0	0
TGGTCACTTGACTTAA	ref_1198_fdr	3	4	6	7	1	8	3	7	3	4
CCCGCATGAACTCACG	ref_1198_fdr	130	68	176	152	72	125	71	146	73	155
ATGGCAGAAAAACTAG	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTGCTTTTACGGG	ref_1198_fdr	122	89	164	129	106	120	80	129	93	88
CGGGCCGTTAGTATTA	ref_1198_fdr	50	41	37	34	42	32	39	49	55	34
AGGTTTATCCCATAAT	ref_1198_fdr	226	106	304	193	127	212	115	242	128	208
TCGATCCGAAGGCCCG	ref_1198_fdr	72	27	109	73	22	61	27	57	28	64
AACGTACGACCGGGTA	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCCGACGTGTGCC	ref_1198_fdr	51	26	100	55	22	54	41	53	42	49
TAACTCTTGTGTGTTT	ref_1198_fdr	115	55	109	104	50	111	51	113	64	100
AAATGGGTTAGCTGTG	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTCAAGAACTACT	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGCTTCTGTTGCG	ref_1198_fdr	75	37	100	74	39	76	30	85	40	87
GCGAGTATCCAGCATC	ref_1198_fdr	139	50	213	140	80	125	69	139	64	121
ATTTCGATTATAATTG	ref_1198_fdr	33	18	57	46	26	40	22	51	14	41
ACTATTTCGCCATTTG	ref_1198_fdr	229	110	240	192	99	202	95	208	104	234
ATCGAGGGCATCACAG	ref_1198_fdr	176	79	214	205	73	176	85	175	92	182
ATGTTCAGTTATGCGT	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTAACGCCCGGTC	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
TTAACACCTCTTCTTG	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTAAGTGCTCGTA	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
CATGCTGAAGAATGTA	ref_1198_fdr	181	75	203	193	70	193	66	156	73	153
CCGTTTGGATAGGAGG	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
TTAGGCGTGGTCCTAC	ref_1198_fdr	170	86	219	164	70	203	87	136	88	168
GCCCGCGTATTGTATT	ref_1198_fdr	135	62	175	118	66	114	61	145	65	116
TCTTACTATCGCGGGG	ref_1198_fdr	190	72	206	207	76	163	77	174	63	153
ATCCAAAGGAGACCCC	ref_1198_fdr	162	76	216	196	85	162	113	176	93	140
ACCACTTTGGTGGTGT	ref_1198_fdr	75	20	68	69	33	57	28	47	30	64
TATTCCCGTATTGCCC	ref_1198_fdr	36	29	77	64	32	66	27	49	18	55
CCTTAGAGCTCAGTTC	ref_1198_fdr	18	22	26	27	19	25	15	20	20	31
TGTCTTTCGGGGCTTA	ref_1198_fdr	720	297	782	661	337	682	300	665	281	662
GCAGGAATTGAACATG	ref_1198_fdr	17	8	25	16	12	10	10	8	11	18
AGTCTTATATTTACGA	ref_1198_fdr	137	44	129	116	74	118	57	120	58	103
CGCCATTGGGAAGACT	ref_1198_fdr	184	64	194	172	91	171	63	155	89	163
GTCTCCAGATTCAGTA	ref_1198_fdr	52	30	59	52	26	48	37	51	35	56
TGTTCACCGGGCATTG	ref_1198_fdr	19	8	27	27	15	21	11	21	16	22
GTGAGTGGGCATATCA	ref_1198_fdr	54	20	71	59	29	61	30	55	19	45
ATGTGGCTCTCTATAT	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGAATGTATTATT	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
AGAAAAGCCTGTCGAG	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
GATGCAATCCCGCCTG	ref_1198_fdr	174	59	197	173	82	209	67	148	80	194
GCAAGATCAGGTAGCA	ref_1198_fdr	86	40	86	107	41	90	50	95	30	78
ATTATATTTTAGTGGA	ref_1198_fdr	162	60	143	134	57	144	61	110	61	126
AATTCACCTGACGTTA	ref_1198_fdr	164	57	191	144	74	156	74	114	82	124
CCCTGGAATCCTACAG	ref_1198_fdr	40	20	46	46	27	30	24	44	24	28
CGTTCCGCGAACCACA	ref_1198_fdr	55	31	64	75	46	58	30	75	33	44
AGGTATCTATCGCATT	ref_1198_fdr	61	18	54	61	13	54	19	62	8	52
CACCAACCGACTTCGG	ref_1198_fdr	32	26	40	29	24	34	19	31	42	26
TACTGTCACTGAGTTG	ref_1198_fdr	16	11	9	9	11	7	6	6	5	10
ATTGTTACAAACTGTT	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTGCTCTCTAGAA	ref_1198_fdr	0	0	0	0	0	0	0	0	0	0
ACCGCCATCTCACATC	ref_1198_fdr	112	42	129	106	50	87	44	90	46	73
ATCTTGGTAGCCTTTC	ref_1198_fdr	106	42	147	110	56	89	52	91	50	118
AAATAGTCTGGATACG	ref_1198_fdr	150	61	160	132	60	150	60	117	72	128
TGGGAAATGTAAGCCT	ref_1198_fdr	70	21	91	71	29	83	23	53	37	63
GTACGTCCAAGCAAAA	ref_1198_fdr	30	15	46	34	10	54	14	46	13	33
CAGACCGTTGAAATTG	ref_1198_fdr	46	19	61	33	40	45	21	45	27	30
TGGTGCTCGTAATTTA	ref_6098_new	6	10	8	4	7	7	6	8	9	7
CAATCTTGTGTAGGCT	ref_6098_new	14	12	15	10	13	10	9	10	9	13
CCCCATCAACTCTTGT	ref_6098_new	31	51	26	22	37	19	38	30	41	21
CCTTATGTTTCAGTCT	ref_6098_new	51	61	74	62	57	54	64	48	63	58
GCCCCATCGTGTGTTC	ref_6098_new	41	56	54	42	43	44	42	30	47	46
CCATTGAATGCTGCTC	ref_6098_new	35	23	31	25	44	28	37	40	17	25
CGGCTTGTGAAATATC	ref_6098_new	41	32	49	36	24	36	30	32	25	36
GGATCCCCAAGGATTT	ref_6098_new	16	18	23	10	20	19	17	12	13	10
TGCTGCTAACAATTTT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
TTACTTATGGCCATTA	ref_6098_new	4	5	8	4	10	8	6	2	2	4
TGACCTACAGATCGGG	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ATAGTACAGTTATTAG	ref_6098_new	56	61	89	67	54	64	58	57	54	57
TGGCGGGTCTCCTTAT	ref_6098_new	70	56	74	69	43	54	49	49	59	54
TACGTTGTTGGGGAGC	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GCCGTATAAAGTTCTT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
TGACTTATGGGCCGGC	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GAATCCTATTTGCTTT	ref_6098_new	23	17	25	26	10	14	24	12	16	20
TAACTATTTCAACAGA	ref_6098_new	71	59	81	91	71	88	61	79	76	77
TTCTCCGGCTTCACCA	ref_6098_new	9	5	12	5	7	7	6	8	11	12
ACTCATCAGCATGACT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
CATATCCTTTAGTTCC	ref_6098_new	2	2	7	1	4	2	5	1	3	0
ATGGACTTTAATTTGA	ref_6098_new	22	27	31	29	26	26	37	28	31	19
GTGGACTTTCAAGATA	ref_6098_new	14	13	15	18	5	14	10	16	8	11
AACAGCGACCCCGCTA	ref_6098_new	0	0	0	0	0	0	0	0	0	0
CAGCAGATAGATTGAT	ref_6098_new	25	39	31	21	19	19	17	28	25	33
CGTCGTTTAATAATGG	ref_6098_new	21	18	23	18	29	16	30	18	21	14
AATGTGCTAAACTTAT	ref_6098_new	3	2	10	5	9	3	5	5	5	3
AAGTTCTGGTTCAATC	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GTTAATTGTGTATTTT	ref_6098_new	7	11	9	7	8	10	4	8	8	7
TCGGTAAGAGAGTACT	ref_6098_new	40	39	35	29	35	33	42	26	36	27
TTGAGCTCATCAGCCA	ref_6098_new	16	13	30	17	17	14	17	21	13	21
TAATCGTTCCCTTTGT	ref_6098_new	71	76	87	100	93	83	76	57	77	76
TTTGTCAAGGGTAGGC	ref_6098_new	29	23	32	30	34	32	30	44	33	33
CGGCAACGGGGGTCTG	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GGATTGCTCTTCTCGA	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ATCGTCTACCTCTCCT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ACGATTTCATCTTGTT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ACTATTCTTCCTATTG	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ATGTCGTTCCTTTTGC	ref_6098_new	7	13	15	11	14	15	16	11	10	10
AGGTGACTTAACTTCG	ref_6098_new	97	93	118	123	85	84	94	79	97	92
TCTTGTCCTGTTGTGC	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GGGGTTATGATTTCCA	ref_6098_new	3	3	3	6	5	2	6	0	5	6
GAAATTTAACCGGATA	ref_6098_new	6	5	6	3	2	5	4	5	4	3
TCACCGTTGTATAGTC	ref_6098_new	0	0	0	0	0	0	0	0	0	0
TTGGCGTGTTCAACCT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GACTCCCAAGTAAACC	ref_6098_new	0	0	0	0	0	0	0	0	0	0
CCTACCGTATATCATA	ref_6098_new	13	13	10	7	9	12	13	5	5	12
GATATGGGTCGGCCTA	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GAGGGCTTTTCCACCC	ref_6098_new	15	6	12	7	14	9	10	31	11	6
ATCCTAGGTGCCTGGG	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ACTCGTCCAATCTGTT	ref_6098_new	7	9	14	15	25	18	16	13	18	9
ATAGGACGTGCAAATG	ref_6098_new	3	3	7	6	3	2	5	7	4	1
ATGATCTGTCGCTTGC	ref_6098_new	7	5	6	7	8	6	8	7	7	6
CGTGGACTTGATTACT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
TGTCGCTCGTAGTCCC	ref_6098_new	49	63	57	69	56	55	62	69	82	66
TCACGAACGATGGTAA	ref_6098_new	238	203	292	214	200	190	210	231	178	178
GCCTTCGTAGGTTCAA	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GGGGCGTCGAACGTTT	ref_6098_new	40	42	45	38	35	39	38	34	42	33
ATGGCTTGAGCCAAGC	ref_6098_new	0	0	0	0	0	0	0	0	0	0
CATCGATGCTTCGGCG	ref_6098_new	2	1	5	1	5	4	3	2	0	1
GCATACAGCAGGTCAG	ref_6098_new	77	47	91	58	59	74	73	69	70	65
ATGTATTGCGCCCCGA	ref_6098_new	0	0	0	0	0	0	0	0	0	0
CTCTGCGTTACAGTAT	ref_6098_new	38	26	41	30	36	26	49	40	32	27
TAACGAACGATGGTAA	ref_6098_new	0	0	0	0	0	0	0	0	0	0
AAATATTGAAGAACGT	ref_6098_new	75	55	98	77	64	79	76	81	63	76
ATTGAAACATCCTCGC	ref_6098_new	35	29	42	26	22	25	30	38	34	27
CATTACGCGCACCGTG	ref_6098_new	28	33	55	30	57	36	45	40	43	50
GACTAAGCATTGATGA	ref_6098_new	25	10	30	21	25	19	22	15	17	13
CAGATTGCCCGATTGG	ref_6098_new	208	182	228	176	198	186	197	182	228	167
GCCTTCTTGGAAACCA	ref_6098_new	8	3	9	7	16	8	10	18	14	8
TAACGTTTTCTCATGG	ref_6098_new	5	7	5	6	11	8	5	9	4	8
ACGTTGATTAAGCATG	ref_6098_new	0	6	4	5	2	3	3	7	9	1
AGTGGTGTACGATCGT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
ATCTGTAATTAATCCT	ref_6098_new	36	28	41	55	41	35	40	35	31	35
CCTCTGGTCATGCAGG	ref_6098_new	75	56	109	65	63	74	65	71	95	55
GTGTGCCACAACATGG	ref_6098_new	31	19	23	19	25	31	35	23	32	17
GACTCGTGGTAAAATT	ref_6098_new	0	0	0	0	0	0	0	0	0	0
GTCAGTATTTCTATCT	ref_6098_new	25	19	35	22	14	26	20	27	31	14
CATGTTTGTGCTTTGG	ref_6098_new	23	25	23	26	18	23	19	19	25	24
ATGAGACTCTCTGACG	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TATACAATACTTACGG	alt_5970_new	3	13	1	4	26	4	27	3	26	7
CTCTGTGCTTCGGCTC	alt_5970_new	16	10	17	15	14	21	12	16	7	26
TACACAACTGTACCAG	alt_5970_new	91	78	112	108	74	89	61	91	86	105
TTGAACTTACTATTTC	alt_5970_new	9	20	25	14	12	21	15	23	16	14
TAAAGCACCTGTGTGC	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TGCCTCTAGAACAGTT	alt_5970_new	0	0	0	0	0	0	0	0	0	0
CTGATCGCCTACTTGC	alt_5970_new	0	0	0	0	0	0	0	0	0	0
ATCAGAGATGAATCTT	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TAGTACGGTTTCTTGC	alt_5970_new	0	0	0	0	0	0	0	0	0	0
ACATGAGACGTTTCAC	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TCGAAGGCCATGTTGC	alt_5970_new	68	48	86	78	52	69	53	58	44	72
AGTTGAGGGGTCTGTG	alt_5970_new	0	0	0	0	0	0	0	0	0	0
CTGGCGATAAGCACTT	alt_5970_new	31	28	27	38	18	32	27	17	29	26
TTAGTGTGGTTCGTCC	alt_5970_new	28	15	22	17	13	17	12	16	18	13
GAACGGTTGATGTCGT	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TTCTCCCTTCTATTAT	alt_5970_new	58	66	47	36	84	35	62	42	66	36
GTTATTCTAGTTCTTG	alt_5970_new	25	28	40	34	31	26	31	33	17	21
TGCAGCCATCTGTCCG	alt_5970_new	5	7	12	9	5	3	7	12	8	5
CGATCCCTGGTATTGC	alt_5970_new	49	41	72	73	48	57	38	68	55	73
ATGATGTCTCGTTCGC	alt_5970_new	0	0	0	0	0	0	0	0	0	0
ACGATTTCTCGGGGTC	alt_5970_new	76	49	89	86	48	81	49	72	70	74
GTAAATGCGCGGGTAC	alt_5970_new	5	3	6	5	2	6	5	2	6	4
TTGTGTAAGCATTGCC	alt_5970_new	53	38	78	72	41	83	52	69	51	55
AGCAGGAGATTTAAGA	alt_5970_new	11	4	8	12	7	8	8	5	6	11
CTTACTCTCTCGAGGG	alt_5970_new	53	40	65	62	42	69	39	42	48	38
GTGGGCTGCACAGTTA	alt_5970_new	0	0	0	0	0	0	0	0	0	0
ACGATCCCGGCACTTA	alt_5970_new	83	57	96	83	43	82	45	68	55	59
AGCCACAGTTCTCGTT	alt_5970_new	8	8	11	6	10	7	8	5	9	4
CCTTTTGCTGACTGCG	alt_5970_new	73	63	84	70	58	62	85	65	56	86
TCTTTCCCTTCCGACT	alt_5970_new	3	3	4	3	4	7	4	6	4	7
GGCTTGCCATGCATTT	alt_5970_new	21	17	26	24	21	22	14	26	4	21
TCTGGTCCAAATAGTT	alt_5970_new	31	31	35	33	16	24	29	29	15	15
CGTTAGACTGCGTGTG	alt_5970_new	64	46	84	69	39	70	61	58	54	62
AGTCTGTTCTTAGTCT	alt_5970_new	27	21	44	24	27	41	34	27	39	31
TCTGATTGAAACTAAG	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TGCGTTTTAGTGCTGA	alt_5970_new	36	32	36	40	22	30	23	36	30	42
GAGTACCCATATCATT	alt_5970_new	88	44	80	60	60	75	53	71	50	60
AGATCGAAAACTGCTT	alt_5970_new	40	27	54	63	30	52	32	53	30	44
GTTTCGCTTCCTTAAA	alt_5970_new	45	26	53	45	27	45	25	49	22	24
GTCACGTTAATATTCT	alt_5970_new	35	20	44	29	7	27	19	23	18	28
TTACGATTATCCTTAG	alt_5970_new	40	30	61	41	28	32	33	46	38	38
TGTTACATTTCCGTTA	alt_5970_new	0	0	0	0	0	0	0	0	0	0
CATGAGCTCGAAAGAA	alt_5970_new	48	24	70	52	38	42	36	55	43	45
TATGAACGTGGTTTGT	alt_5970_new	101	94	132	119	95	106	96	93	101	73
ATTCTCCACTGGGCGT	alt_5970_new	11	11	12	9	11	12	4	5	16	9
CGGACCGACATGTATC	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TTAAGCTCGCTAGCAA	alt_5970_new	0	0	0	0	0	0	0	0	0	0
AAGGGATCAATGTTCT	alt_5970_new	29	13	31	27	16	23	11	25	25	18
ATTTAGAGCTGAGCAT	alt_5970_new	46	29	54	42	27	47	31	33	38	38
GTACGGGGCAAAGAAC	alt_5970_new	201	158	269	185	161	216	174	183	178	188
CCTTATTCCGGTATTT	alt_5970_new	28	30	38	30	14	21	29	40	44	28
TCGGTAATTGGCCAGT	alt_5970_new	0	0	0	0	0	0	0	0	0	0
CCGCCTTTGTCCTCAG	alt_5970_new	15	14	23	18	21	20	21	26	19	11
TCATCGGAATAAGATT	alt_5970_new	191	123	244	197	143	207	131	209	144	159
TGACGAATTGGATCCT	alt_5970_new	23	13	24	26	11	27	22	19	14	12
AGCACACATGTTCGGT	alt_5970_new	66	43	82	59	52	70	45	70	61	62
TCGTCGTGGTACGTGT	alt_5970_new	0	0	0	0	0	0	0	0	0	0
CGTACTCTAGTCTCCA	alt_5970_new	47	87	66	58	79	65	81	48	100	64
TTATAGCGCCCGGTAA	alt_5970_new	0	0	0	0	0	0	0	0	0	0
GCGCCAGTAGACTCTG	alt_5970_new	0	0	0	0	0	0	0	0	0	0
CCGCCTTTCCTATATC	alt_5970_new	4	10	0	4	16	7	18	0	20	3
CAGGTAGGGGTCGCGT	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TCATTTCACGGGTGCT	alt_5970_new	0	0	0	0	0	0	0	0	0	0
TTTGTTGCGAGGTATA	alt_5970_new	0	0	0	0	0	0	0	0	0	0
GGGAACGCAATATGAC	alt_5970_new	65	40	74	64	52	64	39	61	47	43
TAGAAACAAACGTTCT	alt_5970_new	32	25	31	23	24	32	23	22	26	20
CCCTAGGGCTAGGGAA	ref_1924_upstream	14	14	12	17	13	12	10	7	19	8
GTTGCTACGGGGCGTG	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
CCCAATACAAATTTCT	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
GTCCAGGGTACCCGGC	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
TAAATTGACGGACGCG	ref_1924_upstream	78	115	108	118	99	95	97	105	123	81
ATACATAATTGTATCA	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
AACTAGAGCGGCCAGA	ref_1924_upstream	34	27	36	27	35	27	27	27	38	25
ATCGCGCAACTGGCTT	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTTATCAGGGTCT	ref_1924_upstream	14	20	27	11	20	7	33	15	26	22
AGACCTGGCTGAGTTG	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
TGAACCGATATTTTCG	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGGGTAACATAAA	ref_1924_upstream	27	33	30	22	26	14	30	22	33	12
GCGTGCACTATAGTAA	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
GCGGTTAGATCGCAAG	ref_1924_upstream	41	50	63	31	65	48	53	52	60	43
CGCTCAGTTTAGTTAC	ref_1924_upstream	45	47	39	34	47	43	60	36	62	35
CTCAGTATTTCGCTTC	ref_1924_upstream	79	115	85	77	118	65	137	71	131	74
TGCCAATTTTGCAATA	ref_1924_upstream	1	4	3	0	2	2	6	0	2	0
TTTCTATGTAGGCTGT	ref_1924_upstream	68	73	56	46	81	38	99	52	91	52
CATTTCGTCTGGCATT	ref_1924_upstream	62	80	74	49	87	64	93	60	82	43
ATGAGATTTGCGCGTG	ref_1924_upstream	15	22	20	21	23	21	36	13	29	14
GAGCAAAGGGCGGTTA	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
GGTCCCAAATCTAGAC	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
CTCAAATTGCTTAAGA	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTGTTCCCGCACG	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTGGATTCTTGT	ref_1924_upstream	38	32	55	24	37	37	41	37	51	28
TAGTTAACCTAAAATT	ref_1924_upstream	21	15	18	23	24	15	27	18	32	13
AGATCAAAATTAGATC	ref_1924_upstream	35	61	41	39	68	45	71	44	62	51
GCTATCCTCTACGGGT	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
GGGACCGTCTGAATGC	ref_1924_upstream	17	29	33	27	25	15	23	14	31	16
CCATGCGAGTGTTCAG	ref_1924_upstream	0	0	0	0	0	0	0	0	0	0
TCAGTCTTTTGCAGCC	ref_1924_upstream	4	5	9	7	10	4	6	9	4	4
AGTCATCCTACCTTGC	ref_158_RC	6	11	28	10	8	11	13	16	10	12
GTGCAACTTTTGTACT	ref_158_RC	21	12	44	28	12	20	18	23	21	18
ATTATAATTTAGGTAA	ref_158_RC	180	52	221	173	46	169	60	167	45	155
TGCGCGATGTAGTTTG	ref_158_RC	72	36	91	84	27	85	34	83	19	63
TTTTTTGGTGGATGAA	ref_158_RC	0	0	0	0	0	0	0	0	0	0
TCCCCTTCCCGTTTCT	ref_158_RC	0	0	0	0	0	0	0	0	0	0
GGGGCTGCCACTATGA	ref_158_RC	59	13	59	58	18	46	11	38	14	34
GAATTCCCATCCAATT	ref_158_RC	425	159	533	488	137	418	141	423	148	388
TGTAATCGTGACGAGT	ref_158_RC	53	13	73	41	25	39	17	49	15	43
TAGATGGTGCCTTAAC	ref_158_RC	0	0	0	0	0	0	0	0	0	0
AGACTATAAAGCCCTG	ref_158_RC	120	22	102	94	27	98	38	113	44	90
TGAATAGCCATTTCTG	ref_158_RC	0	0	0	0	0	0	0	0	0	0
AACAGTACGGGTCGGG	ref_158_RC	0	0	0	0	0	0	0	0	0	0
TTATTATTTCTTGTCA	ref_158_RC	0	0	0	0	0	0	0	0	0	0
TTCTGTGGACGGAGTT	ref_158_RC	0	0	0	0	0	0	0	0	0	0
GTATAGGTGAGGTGGC	ref_158_RC	19	11	42	28	12	27	17	27	13	23
TTATCGCGTATCTATT	ref_158_RC	0	0	0	0	0	0	0	0	0	0
ATGTAAACAGGTTCTA	ref_158_RC	0	0	0	0	0	0	0	0	0	0
AGTTGAGGACCTTTCT	ref_158_RC	0	0	0	0	0	0	0	0	0	0
TATAGATCCGCGAGCC	ref_158_RC	67	22	108	80	31	70	36	103	35	72
GCGATCCAGCGTCAGC	ref_158_RC	104	35	128	116	39	93	42	126	43	101
GTGTTCGTTCTGGTTG	ref_158_RC	10	3	12	11	5	13	6	7	1	11
ATCACGGCATTTCCGG	ref_158_RC	337	119	464	370	98	396	114	351	103	313
TGCGTCTATGAGAAAG	ref_158_RC	402	147	425	375	149	312	168	374	146	319
GTGTTTACTCATCTGG	ref_158_RC	25	12	43	45	15	35	11	38	8	24
GCTGTACGAGGCCGCA	ref_158_RC	47	13	63	64	24	50	28	49	23	40
TTTCCCATTGTCGTCG	ref_158_RC	0	0	0	0	0	0	0	0	0	0
AGAAATACACCATATT	ref_158_RC	0	0	0	0	0	0	0	0	0	0
GCTGAGCGGACAAAGG	ref_158_RC	0	0	0	0	0	0	0	0	0	0
GGGGCTTCTGGGGCCA	ref_158_RC	586	234	751	668	239	573	251	593	257	557
CCTCAGTTGTCCTCTT	ref_158_RC	41	19	42	55	19	29	18	47	15	38
TATAGAAAGTCTTAAT	ref_158_RC	71	19	84	86	30	66	20	66	18	64
GTCTTCCCCGCTATGC	ref_158_RC	45	50	65	55	45	37	65	30	43	31
CACTGAGTTTGGCTAA	ref_158_RC	18	15	42	22	16	20	11	26	10	27
GGACAGGGTATTGTTC	ref_158_RC	0	0	0	0	0	0	0	0	0	0
TATTAGATTCGTCGGA	alt_5788_new	0	0	0	0	0	0	0	0	0	0
CCTCCTATGTTCCCTC	alt_5788_new	70	84	110	83	79	75	94	68	89	69
ATGGCTCGAGAATGTT	alt_5788_new	32	39	42	28	46	32	38	28	42	38
CTTCTTCCATATGTTC	alt_5788_new	69	78	74	96	91	66	78	49	113	53
TTATCCCGGAAGCGTG	alt_5788_new	104	142	125	127	149	104	150	122	141	87
TGCGTAGGTGGTCGTC	alt_5788_new	47	87	83	53	91	55	77	49	94	62
TATAACATGGCGTAAC	alt_5788_new	38	29	42	55	36	29	38	45	46	33
GCCAGGTGTGTTTACC	alt_5788_new	5	13	7	5	16	6	13	3	16	4
GTTATGACTGTATCTT	alt_5788_new	7	18	15	15	8	12	22	7	18	16
CTTTATTACAATGCTG	alt_5788_new	37	51	33	28	48	36	48	22	41	23
GCCTCTTTAGTCCCCT	alt_5788_new	20	26	29	17	19	17	19	22	25	18
CTACGTGCCTGCGTTG	alt_5788_new	0	0	0	0	0	0	0	0	0	0
CACCTAAGTATGTCCT	alt_5788_new	114	112	138	114	129	105	130	102	134	115
GATTAAGAAGTGAAGA	alt_5788_new	23	26	31	24	32	16	40	23	32	18
GCGGTTCCTTGGATTC	alt_5788_new	44	62	48	38	73	49	56	39	75	36
ATTAGTCGTTTAGTTA	alt_5788_new	0	0	0	0	0	0	0	0	0	0
CGGGTACGCAATTTAT	alt_5788_new	3	13	14	9	11	10	18	7	22	10
GGCCCTACGGATTTTG	alt_5788_new	2	24	6	5	10	3	5	4	9	2
GCTTGTGTGGGCTCCT	alt_5788_new	66	72	57	57	75	53	86	56	94	52
ATCGTAATTCTTGTGC	alt_5788_new	36	50	63	46	41	50	52	31	70	42
TAGCGATCTAAGACCC	alt_5788_new	2	3	3	3	8	1	2	1	6	2
GAGTCTAGTCCTCCGT	alt_5788_new	83	155	67	56	151	72	170	63	175	58
TGGCCGACTGCCAATT	alt_5788_new	0	0	0	0	0	0	0	0	0	0
GTTTTTTCACAAGAAT	alt_5788_new	2	4	0	0	6	0	5	0	3	0
CCAGCCCGCTTTAGCG	alt_5788_new	134	152	159	127	160	113	154	124	173	119
TGCTTTCTAACGGCTT	alt_5788_new	31	35	34	19	40	17	33	21	45	24
ATCCCCCGCGCATTTT	alt_5788_new	44	56	55	42	35	40	52	37	60	26
GCGACAACGCCACTTG	alt_5788_new	15	28	28	12	30	12	38	22	23	26
ACACTCAACTCCACAT	alt_5788_new	0	0	0	0	0	0	0	0	0	0
ATTCGAGTATGGGACC	alt_5788_new	6	9	13	11	16	10	12	6	19	13
CTTAGCAGGGAGACCA	alt_5788_new	16	20	16	11	16	16	18	12	20	7
ACTTATTAATACGCGC	alt_5788_new	64	76	53	67	59	50	81	48	86	54
GTTTGAATACCCTAGA	alt_5788_new	16	4	13	10	12	7	19	6	18	9
GCACACTTTGACCATT	alt_5788_new	49	60	53	44	70	44	53	54	75	39
TGCAATCCCCCATGTA	alt_5788_new	13	23	13	13	15	6	25	6	11	6
CATGGCACTATGCTTA	alt_5788_new	0	0	0	0	0	0	0	0	0	0
CATTTGCATCTACGCA	alt_5788_new	35	39	43	38	51	20	54	34	48	35
TGTAATCGGCTGAGGG	alt_5788_new	19	43	40	24	36	24	46	27	48	25
CTAGCACCTAGGAGAT	alt_5788_new	15	15	19	11	15	9	17	13	19	10
CGCTCATTAATGAATT	alt_5788_new	30	33	29	15	23	17	28	12	31	18
CGGTTCTTTCAGGCTC	alt_5788_new	8	14	18	12	15	11	13	14	11	15
CTGACCGGCGTGGATT	alt_5788_new	27	31	39	21	26	26	25	29	21	28
TCCTAAGACACCGCGA	alt_5788_new	25	26	25	11	24	34	32	13	24	16
TGGTTCTGTTTGATAA	alt_5788_new	35	53	34	36	43	33	68	28	43	21
TGCTTCGGGTAGAAGA	alt_5788_new	63	59	63	48	71	53	79	47	81	53
TTTCGTTTTCAGAATG	alt_5788_new	31	30	42	33	39	27	40	28	42	48
ATTAGCCTACATCTAT	alt_5788_new	2	8	4	4	8	1	15	3	9	0
CTGGATTGCTGTACTT	alt_5788_new	56	61	62	54	83	51	85	45	100	46
CATTTACCATAATGTT	alt_5788_new	9	6	10	8	12	4	10	3	16	3
GCCAAAGGATTTCGCC	alt_5788_new	0	0	0	0	0	0	0	0	0	0
CACGTATTTAGGGGGG	alt_5788_new	0	0	0	0	0	0	0	0	0	0
TCGGATGCGTGGGCAC	alt_5788_new	24	23	29	20	29	19	41	22	36	28
ACAGTTACGTCTGCGA	alt_6012_new	77	103	85	76	103	64	107	63	111	72
TGGATTAGGCTCTCAT	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TTATAGGGCCAGTGCC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
CGCCGTGGATAATAGG	alt_6012_new	0	0	0	0	0	0	0	0	0	0
CTAGGGCTCGCACTTA	alt_6012_new	16	19	17	15	31	9	33	20	25	14
GCCCTGGACGGGTTTC	alt_6012_new	21	33	36	28	46	28	34	29	31	36
TACATGTCTGTATAGA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
AAGTTCCTATGCCCGA	alt_6012_new	24	30	33	26	25	21	35	19	31	15
CCCGTATTGCCTTCAT	alt_6012_new	5	47	11	7	41	12	61	5	51	8
ACTTGGCCAGAATGCC	alt_6012_new	53	82	55	59	70	53	81	42	86	51
CGACTCACGTTTTGAG	alt_6012_new	15	10	15	13	16	13	15	8	20	7
CATTTAATCTGTCCGC	alt_6012_new	14	17	21	13	22	18	21	22	21	10
TGTCTTCCCTCAGCAT	alt_6012_new	7	9	14	9	10	7	3	3	10	13
TGTCCACGAACTGAGA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TGATCGGAAATGTTCT	alt_6012_new	15	27	13	19	18	13	17	11	21	21
TTAGCATCTCTTTCAA	alt_6012_new	39	45	55	30	43	33	53	34	48	33
TACCCCTACGCTGGAT	alt_6012_new	25	20	21	14	18	27	22	13	25	19
CCCTCCGATTAGGCGT	alt_6012_new	0	1	0	3	1	1	2	3	3	0
TCTTTCTTAGACCCCC	alt_6012_new	21	27	17	18	22	16	20	25	18	18
CGTTACGCATATCAGA	alt_6012_new	21	34	26	23	53	24	29	15	32	24
TCTAGGCCCATGGCGA	alt_6012_new	86	57	85	68	63	65	79	78	83	94
CAGCCAGGACCATACA	alt_6012_new	11	20	13	11	17	9	11	9	22	9
AGTGTACGGCGCGCTC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
CCCGGGAATACGTATC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TCGCAGCTCGTAGGAA	alt_6012_new	47	66	60	73	68	55	80	36	75	44
GGTGCCGGCTTAGCTT	alt_6012_new	7	17	15	13	9	9	9	14	16	8
GCGTTAGTAGCTCGGG	alt_6012_new	66	104	124	89	112	81	118	66	105	72
TCTACAAGAAGTACGT	alt_6012_new	0	0	0	0	0	0	0	0	0	0
GTGACCGGGATCGATT	alt_6012_new	5	13	17	14	15	10	16	10	16	12
GTATGATTACCAGTTT	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TGGCGTTCTGATTACT	alt_6012_new	7	7	7	4	5	5	8	7	12	7
GTTCAGTGAAGCCCTT	alt_6012_new	4	5	6	4	6	2	11	5	14	3
TGTTCGTCGTTTCTGT	alt_6012_new	0	1	1	2	3	2	2	2	1	1
AGCATCCAAGCAGTAT	alt_6012_new	25	30	43	25	31	23	29	26	45	21
GCGCTTCATAAGTAGC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
CTGGCCTGAGGTTTTC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
CCTCCCCTGCATATCG	alt_6012_new	0	0	0	0	0	0	0	0	0	0
AGGAGTACGCGCTGGT	alt_6012_new	107	106	130	114	100	100	139	97	107	89
TTCGTGAAGTCAATCA	alt_6012_new	13	9	14	17	11	9	29	5	7	6
CATTTAGTTAAGCTTT	alt_6012_new	30	43	36	40	31	23	39	32	41	21
GGTTAGTAGCGACTTA	alt_6012_new	50	53	61	63	53	52	71	59	85	44
AGTTACTCCTCTGCCT	alt_6012_new	8	27	10	2	26	2	25	6	48	2
ATTAGCGTGCATGAAT	alt_6012_new	5	5	5	8	4	14	6	1	5	5
GTCCCCAGCACTTAAA	alt_6012_new	13	13	18	16	22	13	20	16	29	13
AGACATCCTGAATTCA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
ATACACGCCGCTACAA	alt_6012_new	14	22	34	29	25	14	29	22	23	16
TGTCGCAATTGCTACT	alt_6012_new	21	21	16	17	33	16	33	22	30	17
CTTATCCCATTTTTCC	alt_6012_new	29	43	39	42	36	36	38	34	37	30
CACCGTTAGGGCTCAA	alt_6012_new	19	20	19	9	23	11	33	14	25	23
CCCCGGCTTGATGGGG	alt_6012_new	159	160	176	144	173	148	153	127	194	111
ACCTAGCTCACGATTA	alt_6012_new	22	42	35	22	42	21	48	34	38	19
GGTGTCTGGGGTATGT	alt_6012_new	3	7	6	6	9	6	8	6	15	7
GCTCTCGCAGGAACCA	alt_6012_new	59	56	77	70	62	60	87	48	68	60
CTCCCTATCATTGCCT	alt_6012_new	7	23	8	9	25	7	14	8	10	8
ACATATTTTCTGCGCG	alt_6012_new	12	11	13	13	12	9	11	7	19	7
CTTTTCCGGTGCATGA	alt_6012_new	23	32	26	23	27	22	44	23	21	24
TATGTACTTTGCATAA	alt_6012_new	37	37	33	33	45	35	40	28	41	23
TCAGGCGCCAAAAGTC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
AAGTATACATCAGGCT	alt_6012_new	11	12	22	23	16	10	16	11	13	14
CCATAAGATCGCTGAG	alt_6012_new	3	10	2	7	4	2	4	8	7	5
CAGGTGCGTGACAATG	alt_6012_new	0	0	0	0	0	0	0	0	0	0
GCTATGCTGTGCCGCT	alt_6012_new	5	1	6	3	5	2	5	2	6	4
AGGCTCGTGAACTAGC	alt_6012_new	177	196	181	182	202	166	209	167	232	154
AGATTATAGTCCAATT	alt_6012_new	0	0	0	0	0	0	0	0	0	0
AGAAGTACTAACTAAT	alt_6012_new	17	25	24	20	24	22	16	28	19	18
TCTCGTATGGCCGCAT	alt_6012_new	90	86	100	70	79	69	83	75	75	71
GTCTCATTTACGGGAG	alt_6012_new	20	13	22	16	30	14	17	10	18	20
GGCCAGATCTACAAAA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
AAGAATGTCGAAAGAT	alt_6012_new	13	8	17	14	13	3	7	6	10	8
AATCAATATTAAGCGA	alt_6012_new	42	49	61	42	55	41	30	43	38	31
TCATCTTGTTTTTTCG	alt_6012_new	18	24	15	15	13	21	18	14	19	22
CGGTGTATACTCTTTC	alt_6012_new	50	74	53	65	61	55	79	41	87	35
TGCTAGGTACAAGGAG	alt_6012_new	5	8	9	6	6	6	6	2	11	4
AGATATAGCTGTAATC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TAGAAGCAGACATCTA	alt_6012_new	108	145	144	121	186	123	190	119	179	96
AACTGAGTCACCGCAG	alt_6012_new	61	48	73	70	69	50	74	72	66	62
GTAATGCCACCAACGA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
ACGATTGGTGTCGGTA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TCAACGTAGCCGATAT	alt_6012_new	0	0	0	0	0	0	0	0	0	0
ATCTGGCGGTATCAGT	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TCGAAAGCCGCAGCTG	alt_6012_new	0	0	0	0	0	0	0	0	0	0
CACAGTATAAAAAGTA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
AGTAGACGGAAAGTAA	alt_6012_new	16	12	11	19	6	11	15	15	16	12
TCGTCAATGTAATCTA	alt_6012_new	12	9	14	10	17	12	13	8	5	7
CCCTTAATGGACCCGC	alt_6012_new	40	41	45	49	58	39	41	47	48	34
TTCATTGTCTCTTATC	alt_6012_new	31	34	49	29	27	24	29	30	28	34
GAATTTACAATTAATA	alt_6012_new	22	12	30	26	29	28	26	25	25	18
TAATTTACCCATCCGA	alt_6012_new	66	88	99	73	59	68	98	54	86	64
CACATGGTATCGCACG	alt_6012_new	2	4	5	7	3	0	7	7	4	0
CAGCTCATAGTGCCGC	alt_6012_new	26	37	31	29	30	19	32	30	30	16
TTATGCGTCTAATCCC	alt_6012_new	164	173	177	173	172	147	193	118	185	128
AATTCCTGGTAATGGC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TAATTTACACATCCGA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
ACCTCTTGTGGCGATA	alt_6012_new	10	8	4	11	12	9	8	14	14	10
GAAGTCGTGTTGTGAT	alt_6012_new	8	10	15	20	10	7	8	14	14	9
GCTCATTTTCCCTAAA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
GATTAGCAGATGAGTT	alt_6012_new	50	72	84	48	59	50	73	44	68	50
TCTAAGAAAAGGCGTA	alt_6012_new	7	3	4	4	4	2	6	4	6	5
GTTTGCGTTCGGACTA	alt_6012_new	17	39	22	22	35	24	33	25	42	28
GTGCTAGAGTACCCTA	alt_6012_new	7	11	7	5	5	9	6	9	9	5
TCACAGGGTAAGTCCT	alt_6012_new	45	32	31	37	27	32	43	23	34	21
TTTCATTTTCAATATG	alt_6012_new	39	38	48	45	49	42	34	34	47	33
CTGATCAATAACAGCA	alt_6012_new	21	16	27	19	22	18	25	15	33	22
TCTTGCACCGATCCAC	alt_6012_new	45	37	43	34	33	37	36	35	39	36
GAACTCGTTTTAGTCT	alt_6012_new	28	29	30	17	28	28	28	25	29	17
CTTCCTGCGCAACCTC	alt_6012_new	26	20	17	22	20	28	32	21	38	24
CTTCTTAGCTGGATTC	alt_6012_new	13	26	18	12	20	11	12	13	23	3
CTAGCAAGCGATCATA	alt_6012_new	0	0	0	0	0	0	0	0	0	0
TATTCCTGGTAATGGC	alt_6012_new	103	128	121	109	100	93	111	88	128	84
AATTCTTGGCCTATGC	alt_6012_new	0	0	0	0	0	0	0	0	0	0
AATATGATACAGCGGC	alt_6012_new	37	28	51	43	35	32	34	43	37	45
CTCTGTCTTGGAGCCC	alt_298_upstream	117	64	144	144	76	132	87	131	77	135
CCCCGTTCTCTCGTAT	alt_298_upstream	5	7	9	6	8	6	7	5	6	2
AACGATCGACTAATAC	alt_298_upstream	72	49	87	92	51	75	51	75	57	72
CAAGTACGCTTACTTG	alt_298_upstream	31	15	39	47	11	26	18	34	13	32
GTGATCTTCGTATTGT	alt_298_upstream	52	23	61	49	23	52	15	62	26	32
CTTAGTGGATTCTATG	alt_298_upstream	127	95	184	142	102	124	99	150	92	105
CCTGAATTTGCCAGAC	alt_298_upstream	13	2	13	6	5	5	4	5	0	4
TTACTGGGGCGGCTCC	alt_298_upstream	132	66	161	144	80	122	64	144	57	131
ACGTCGACCTATGCCC	alt_298_upstream	50	36	55	54	44	47	46	63	40	56
AATTTCGGCCTTGGTG	alt_298_upstream	5	8	14	17	7	13	12	8	6	13
TATAATTTATCTAGGG	alt_298_upstream	37	19	64	50	21	33	27	36	15	38
ACATTAGACCGCGGAA	alt_298_upstream	133	46	144	149	56	102	48	104	55	100
ATAACGCGGTTCAGGG	alt_298_upstream	88	56	129	119	45	82	55	85	44	98
CCTCGTTGCATTAACT	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GTGATGCATTTTCTCG	alt_298_upstream	73	27	90	90	37	88	35	88	58	61
ACTATAGACCTTATCT	alt_298_upstream	120	56	110	126	60	97	50	120	70	108
CATACCTTCCCTACGT	alt_298_upstream	63	22	43	51	20	36	30	36	11	36
TGACTTTCCTTCATTT	alt_298_upstream	127	67	168	151	48	131	65	106	50	103
TTGTTTATTCATGTCT	alt_298_upstream	167	49	177	178	52	129	51	153	51	130
TAGTGTGAGTGATATA	alt_298_upstream	30	24	37	53	15	32	33	36	20	37
AGAATCCAGACGATAT	alt_298_upstream	144	69	228	166	54	165	67	151	74	141
GTTCTTCACCACAATG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
TGTTACTTGTATTTCC	alt_298_upstream	19	4	12	16	16	14	6	15	5	8
CCTTCCCGCTAATCTG	alt_298_upstream	31	14	37	35	22	29	13	28	18	32
GGTTGCGCGTTTGCTA	alt_298_upstream	8	2	9	5	2	6	4	2	5	2
GAATTTTGTAGATCGG	alt_298_upstream	70	14	103	63	28	46	25	47	36	39
GGGCTACCCTGCTTTT	alt_298_upstream	13	7	4	11	9	3	2	6	4	5
TGGCAATAAAGGCTGG	alt_298_upstream	135	66	143	146	56	148	80	146	73	138
TTACGGATAACTCTTC	alt_298_upstream	104	63	124	95	44	90	57	101	48	73
GGTTTATACCAACCTA	alt_298_upstream	182	74	164	143	77	141	81	125	105	138
TGCTCAGGTCGCCTGC	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GAGTCTCTTATTTTTT	alt_298_upstream	9	6	19	10	8	12	4	17	5	9
CGATACCCGACGGTTT	alt_298_upstream	52	35	62	60	36	60	39	44	33	51
GGGGTGGTAACATAGG	alt_298_upstream	46	19	55	36	29	36	17	41	12	32
CTCCTCTTGCTTTGGG	alt_298_upstream	87	56	73	86	59	77	57	73	50	84
ATTATCTTATTGTATT	alt_298_upstream	103	39	116	117	41	104	53	82	50	77
ACCCGGTCCGATCGGC	alt_298_upstream	127	59	157	147	74	126	74	130	79	97
CTAATCCTTCATAGAC	alt_298_upstream	18	8	34	22	12	26	4	20	21	21
GACGTTTGATGTGTAG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTCCTTTGTCGCG	alt_298_upstream	15	12	26	20	18	30	11	26	16	28
GGAGATCTACTGATCT	alt_298_upstream	145	82	170	173	69	138	92	113	77	106
ATTTCTATTTTGAAGT	alt_298_upstream	86	45	99	79	33	70	47	69	52	54
TTTTGTACCTATGTCT	alt_298_upstream	320	123	426	369	185	342	147	334	152	307
CCTACCGGGATACACT	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCATCTTCCTTAT	alt_298_upstream	71	23	78	67	23	61	36	59	32	61
GCGCGATCGCCATATT	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GTTACTGCTACTGTTG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GTGTTCGATTGAGCCT	alt_298_upstream	74	40	76	65	36	67	20	62	41	59
GTATCCCGCTGGCCTA	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
TTGTATTGAAGGCATA	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTCGGCATCCTTA	alt_298_upstream	82	35	87	96	44	71	32	74	39	58
GCTCGCATGGTTACTC	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
AGGTCGTTAGCACAGT	alt_298_upstream	18	5	19	20	7	16	9	9	10	16
TACGCTAGCCGTATCA	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTTTTTGACTCTC	alt_298_upstream	131	46	163	160	52	162	60	146	51	135
TCAATTCATGACTCCG	alt_298_upstream	86	51	101	128	62	85	49	89	57	114
AGACTGATCCAGCTCT	alt_298_upstream	6	3	9	16	8	5	3	7	5	10
TTAGGAAGCTGCATAA	alt_298_upstream	48	24	69	67	23	69	19	51	29	47
TACGGGCTAGAATCTC	alt_298_upstream	52	15	53	46	22	54	26	50	23	48
TTAGGTAAGCCATAAG	alt_298_upstream	71	45	85	87	37	68	41	82	49	84
TGGGCCGAATTGTACG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
AGTCTCCGGCCAGGTA	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GGCCGTAATCTATCGT	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
CCACTGAGTCCTACAG	alt_298_upstream	63	23	55	64	22	49	31	57	24	47
GGCTCGTCGATTCGAG	alt_298_upstream	94	40	125	81	38	77	34	70	40	69
TATTCGCGTTTTGACT	alt_298_upstream	27	13	34	36	14	33	19	27	24	40
CAAGGTACCGTTCATT	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTTATATGTTAGT	alt_298_upstream	77	30	89	77	24	76	53	67	33	54
AAATTCGGTTCTGACC	alt_298_upstream	11	10	23	21	13	13	22	16	11	14
TTATCGACTCCCGCTG	alt_298_upstream	19	7	22	22	14	30	14	28	10	29
TGTTGGGAGGTTAGGG	alt_298_upstream	63	37	79	69	56	65	40	52	37	55
CTGTGAGGATGTATCC	alt_298_upstream	87	38	88	95	47	96	42	76	50	81
GTTTAGGCACGTACCG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
AGTGGGCCTGCTCAAA	alt_298_upstream	28	15	45	31	11	28	16	23	10	25
TCATCCGGGGAGAGAT	alt_298_upstream	202	105	239	203	137	179	116	202	111	195
CACAAGTTCGTGGCAG	alt_298_upstream	6	8	21	7	8	8	4	12	2	10
GGTCGGTGTACTTCGC	alt_298_upstream	12	3	20	18	5	17	8	28	6	17
CCATGCACTTTTGAGT	alt_298_upstream	12	4	6	28	8	9	10	13	8	6
AATGCAATGGTTTACA	alt_298_upstream	88	19	104	83	38	70	36	84	43	92
GCGTATGGGTTCTTCG	alt_298_upstream	48	23	68	48	28	45	21	45	14	49
AATCGTACGGTCTGGC	alt_298_upstream	50	22	69	56	41	44	24	43	17	50
GTTCCGTAGTTTTCTT	alt_298_upstream	22	11	40	45	17	42	20	23	11	25
GACCTCAAGGTACAAC	alt_298_upstream	12	9	14	11	8	10	12	6	13	6
AGATCAGTACCGTAAG	alt_298_upstream	19	9	9	13	6	8	14	13	3	19
GATTATTGGTACATAG	alt_298_upstream	26	17	34	32	17	26	31	22	17	27
TCAGCCTACGTGGAAT	alt_298_upstream	94	77	134	126	70	85	78	124	85	88
ATGTTTCACCTGTCCT	alt_298_upstream	104	67	137	112	60	104	48	128	60	113
ATTCTTGATTGCAGAG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GTGGGCGCACTGTTGA	alt_298_upstream	13	4	15	21	7	16	11	10	4	7
CCTAATAAAATTGCTT	alt_298_upstream	22	6	19	26	9	18	9	15	12	30
TCGGCGTAGTCCATCA	alt_298_upstream	175	82	215	180	98	167	107	160	96	140
GCAACTTAACTCGGCA	alt_298_upstream	0	0	1	1	0	0	0	0	0	0
TCACGCATACTACGTA	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTAAGAGTTTTCG	alt_298_upstream	74	47	99	83	46	81	42	73	51	83
CCGGGAGACCGTACAG	alt_298_upstream	0	32	5	4	25	1	23	0	20	5
TGCACAGCAAGGTTGT	alt_298_upstream	20	18	35	39	20	23	12	22	11	15
GTGTGACGTAGCACCG	alt_298_upstream	320	163	419	359	154	315	199	349	184	290
CAGAGGCAATAAGTTT	alt_298_upstream	24	23	35	28	11	17	15	32	7	22
TTCCAGACCTTGTCGT	alt_298_upstream	89	41	112	87	55	89	58	103	77	72
TCTTTTGCCTACTCCA	alt_298_upstream	24	18	31	25	5	20	11	34	13	22
TCGTGGTAGCGTGGAA	alt_298_upstream	227	102	228	245	101	220	119	211	102	195
GCGTATGGGATGTCAG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTGATCGCAATG	alt_298_upstream	84	42	136	135	70	104	60	114	58	88
GCATACTCCAAAACCG	alt_298_upstream	0	0	0	0	0	0	0	0	0	0
GTGCGGTAGTTGGGTT	alt_298_upstream	666	417	928	744	405	734	426	671	411	624
CTCGTTCTGGCGTCGC	alt_298_upstream	25	20	26	23	9	38	11	28	9	28
GCTTGCGTTGTGTTAT	alt_298_upstream	245	136	351	273	151	242	142	246	147	192
TTTGACGGGTGCGTAC	alt_298_upstream	45	23	66	48	19	47	22	49	22	47
TAACCTAACGTAGTGA	ref_5943_new	63	77	81	46	75	50	95	65	84	45
GTCTTGCCTGGCACAG	ref_5943_new	53	56	57	44	80	39	73	46	81	55
ACCCCTTATTTAGAGG	ref_5943_new	84	106	147	78	122	91	116	89	159	88
AATCCGAGCTCTGGGT	ref_5943_new	13	12	17	15	20	11	25	16	14	20
TTGTATTGTTTTTATC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CTTTAATCGTGCTTTT	ref_5943_new	2	3	0	2	1	4	1	3	0	1
CGAGTTCTCTTAAGAT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CGCATTTGTTCGACCA	ref_5943_new	52	159	95	61	157	44	144	56	143	51
CACATGGAACAGCCTC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GTTTTAGAGAATTGTT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CATACGGATAAGTGTT	ref_5943_new	36	56	45	34	73	39	59	39	36	42
GATAAACCATGGTCAT	ref_5943_new	98	124	97	98	101	70	135	74	121	80
TCGTCTTTCTATTACT	ref_5943_new	2	4	5	8	2	2	6	1	9	0
CACCATATCCGAGCTA	ref_5943_new	6	4	2	5	4	4	8	8	7	0
CTTTCGTCTTTTCGAA	ref_5943_new	44	45	46	50	67	41	63	34	38	36
CGGGCAGTCGGTATCG	ref_5943_new	54	81	59	65	83	56	73	70	103	48
ATATGGTTGTTCGGCG	ref_5943_new	11	14	12	5	4	8	17	7	12	7
CGCTTCGATACTGGGA	ref_5943_new	95	112	113	103	130	97	135	102	130	84
GGTGTGGCATTCTTAA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ATCCTTGGGTTGTATG	ref_5943_new	6	13	7	9	6	6	21	3	4	4
CGAACTTGTATACAGA	ref_5943_new	12	18	15	13	17	14	24	7	18	5
GTTTGAGACGTTTGCT	ref_5943_new	38	59	45	35	45	39	54	31	55	35
GCTATAAGGTTTTCCG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TCACCACTCTGGTGCA	ref_5943_new	38	57	51	32	63	30	65	32	64	27
GTACGCCTGGGGCCTC	ref_5943_new	43	61	34	42	46	28	49	33	82	28
TTGCACTCATGATGTT	ref_5943_new	32	41	51	40	52	28	55	25	47	37
CAATCATTCGCCCTTA	ref_5943_new	17	11	9	9	21	11	15	9	16	8
TTGATAAGTCACACTG	ref_5943_new	48	64	59	50	69	50	70	39	90	53
CTCGCAGGGTATTACT	ref_5943_new	11	11	16	17	26	11	18	13	16	7
GTCTGGTGCCAACGGC	ref_5943_new	2	0	1	2	3	0	2	2	1	0
TGGTCCTTATTATCCA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTCAGGGTAATGTTTT	ref_5943_new	129	142	164	136	132	122	162	117	167	119
ATTCACTGTTCACTTT	ref_5943_new	2	1	9	4	4	1	4	1	4	4
CAAGGCTCACAACCTT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ATTCGTTTGTCGTTCA	ref_5943_new	17	39	25	25	22	16	24	16	35	22
TTCAGGATCCACGTTC	ref_5943_new	0	0	0	0	2	0	0	0	1	0
ACTCAGTGCACCTTCG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
AGCTTGACTTTCCATG	ref_5943_new	5	0	4	4	0	2	4	5	9	1
TATCGAACATTTATTT	ref_5943_new	58	75	74	65	70	56	78	70	81	65
GCGCTGCAGTGTTTCC	ref_5943_new	15	54	33	28	33	38	37	26	53	28
CTTCCGTAGGGCATGC	ref_5943_new	0	0	0	1	1	0	2	0	0	0
GAACGGTATTCGTCTG	ref_5943_new	55	66	67	41	66	41	62	50	66	34
ATGATTAGAGGTTTTT	ref_5943_new	4	13	7	4	8	13	12	6	14	9
GTATCACCGCGTATCG	ref_5943_new	1	0	0	0	2	0	1	4	0	1
CCCGAATGGCCTCTGT	ref_5943_new	50	42	58	35	45	44	45	31	49	27
TTCTATTTTACCCCTC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TCATTCGATGGGGTAT	ref_5943_new	64	85	108	67	84	65	84	75	117	75
AGGGTTTCTGTCAACG	ref_5943_new	23	25	23	26	35	25	26	16	26	30
TAACTCATCCTGTAAT	ref_5943_new	12	13	14	16	16	5	15	7	23	9
TGGATAACCTTTGACT	ref_5943_new	15	10	10	14	16	10	24	12	13	11
CGACTTATTCTACAAG	ref_5943_new	32	48	41	24	51	21	48	35	59	31
CTGGGGGCTTGAAAGC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GCTTACAGCTGACATG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTATGGCGCTTTGCCG	ref_5943_new	6	4	3	6	2	8	6	3	6	5
GCTATGCCCATCGGTG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GTCAATACGTAGCAGT	ref_5943_new	172	273	216	188	278	201	285	173	284	173
CGGCCAGCATCTATTG	ref_5943_new	31	48	44	31	50	29	41	26	58	34
GCCCATGTAGTTCCGC	ref_5943_new	25	31	22	18	26	20	23	17	51	21
GGTAAGGGTAATTGGG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GATTCGTTGTGGATCT	ref_5943_new	64	79	79	83	82	58	110	72	98	57
TGCAATCTTGTCCTCT	ref_5943_new	92	130	126	90	109	94	110	90	115	82
GCTTCACTCGCACTAA	ref_5943_new	100	151	105	91	145	95	133	84	142	78
AGCATGTCGTCGTTGC	ref_5943_new	27	24	28	20	28	9	23	12	40	19
CTAAGACCCGAATCGG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTTCAGTGTTGCCCAA	ref_5943_new	45	77	65	59	84	57	79	65	92	46
GCTGCGCAACAGCACC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTGCTTCGTACTTGCA	ref_5943_new	18	18	16	6	12	9	32	11	34	11
GCGCGGTTACCAGCTC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTCACTGATAAGTACT	ref_5943_new	7	7	6	7	16	9	20	10	14	7
AAGACCGATCGCTATT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TCCAATCTTGTCCTCT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CAGAGAATTAAGCCTC	ref_5943_new	24	30	36	45	25	26	42	25	32	29
AGCAATCTTGTCCTCT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CTCCCGGAGCCAGATA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ATTTTTAACACTAGAT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CATGGTCACACCTTCG	ref_5943_new	13	22	9	19	12	11	23	9	21	11
CTATTCTCTAGAACAG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GCTTCTCTCCACAGCA	ref_5943_new	22	13	26	21	30	17	34	21	25	23
AAGATCTCGGCATTTT	ref_5943_new	18	13	11	21	12	16	13	8	11	16
CTTTCGACTCTCCCTG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ACTTAGAGCTCCAGGT	ref_5943_new	41	61	47	40	57	37	54	28	42	30
CCCTATTCCGTTGGAA	ref_5943_new	24	33	34	19	55	26	39	28	42	24
TCTATTCCTTGATTAA	ref_5943_new	124	133	134	125	165	130	168	117	169	114
AGCGTAGGTCTTCCCT	ref_5943_new	14	16	13	17	12	8	18	13	16	7
CTGGGTATGATTATTG	ref_5943_new	11	13	15	17	18	10	14	13	15	13
AGATAGCTGTAGCTTA	ref_5943_new	13	21	11	6	9	7	16	15	31	8
ATGAATAAGCTCTAAG	ref_5943_new	111	149	124	125	142	79	158	103	187	84
TTTTTTGAATTTTCCC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TCTTCTACGTAGCTAG	ref_5943_new	16	16	20	21	16	16	27	21	23	10
GGTCCTATATGTGTAA	ref_5943_new	34	65	48	28	56	32	66	38	62	33
TTACTATATTAACATT	ref_5943_new	1	6	0	0	1	0	3	2	3	3
TCCCTGTCCTTCTAAT	ref_5943_new	8	18	14	7	25	11	23	16	25	15
TCTTTTTCGATCGTTC	ref_5943_new	3	1	0	4	6	2	6	5	6	1
GCTTGTGTCTTGGACT	ref_5943_new	6	4	9	6	7	11	14	6	7	5
CCGCACGTCGACCCCA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTAATTTGGTATGATC	ref_5943_new	83	125	102	99	144	98	135	87	136	88
CATAAGCTCCAGCGCT	ref_5943_new	77	96	80	83	111	74	115	65	121	72
TAGGATCACTCGCATA	ref_5943_new	9	16	17	12	21	14	31	14	19	12
TTCTCCCGGCCCGCAT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CAATCGGGACACTCAC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CTGACCATTTTCTCCT	ref_5943_new	49	36	47	48	45	49	50	37	41	58
TTGATCCGCGGATATT	ref_5943_new	32	38	32	43	39	28	40	34	41	24
CGTGGGGCAGTTAAGG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TAATTTGCAGGAGTCT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GCGCTGCATAAGTTAC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTAATTTGGTATAATC	ref_5943_new	0	0	0	0	0	0	0	0	1	0
GCTTGGATTTTTGCTG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ACCGTGCCGGGTTCAT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TGATGTCTCAACCTGC	ref_5943_new	7	20	12	13	23	12	20	8	18	7
CGCGTAACCAATCTTC	ref_5943_new	4	6	8	4	5	4	7	7	10	5
GGAACCACTCTGTGGC	ref_5943_new	0	12	7	2	5	3	5	5	11	5
CTGCGACGCCTTTCGT	ref_5943_new	62	73	66	62	79	43	45	64	63	57
CCGTCACAATTTTCTG	ref_5943_new	0	5	0	1	7	1	4	0	3	0
CGTCGCTAGAAGGGGC	ref_5943_new	21	37	15	19	26	22	37	22	55	24
ACGTGCCCAGATAGCT	ref_5943_new	14	18	15	22	8	15	16	13	16	11
AGGTTCGGTCGAGGTA	ref_5943_new	28	23	21	16	15	10	20	18	23	23
GCGTAATGGGTCGCTA	ref_5943_new	76	96	89	97	116	83	114	73	142	73
TTCTGTGCGCCCTGGA	ref_5943_new	41	66	62	48	57	33	81	44	33	42
GATATCGGGCCGTATC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ATTTTAGAGATGCACC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GGTATGTGTCTTGCAT	ref_5943_new	2	3	0	1	6	2	4	6	5	3
CTGATCTTTTCGCGAT	ref_5943_new	27	38	38	31	43	21	41	30	33	20
ACCGCCATATTTTACC	ref_5943_new	54	50	72	46	53	46	56	57	69	46
CTCTATCGTACACAGT	ref_5943_new	25	29	29	25	25	26	28	16	26	21
CTCTACTTTTCTTGAG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TGTCATTCGGAATCGA	ref_5943_new	3	5	6	6	7	2	13	4	10	7
CTCGATCGATACCATC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TGGGTCGGAGTACGCA	ref_5943_new	178	238	245	201	280	174	254	174	266	159
CGCTCTTGTTCCATTC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TCCGCTTACTATTCCC	ref_5943_new	6	7	11	9	10	6	11	6	14	2
CCCACGACTGCGGCTC	ref_5943_new	30	57	45	41	64	33	39	35	46	33
AGGCGCGTGCTGGACC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ACGTCCTTCCTCAGTA	ref_5943_new	2	1	0	1	2	5	0	2	0	1
TTCTATCGCTTGGTGA	ref_5943_new	21	42	47	24	62	33	48	37	49	36
TTGATATCGGCGCGGA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GTAAATTTCCACGCCG	ref_5943_new	38	73	31	54	58	49	72	42	71	31
AGATTGTCTTCCGCTC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CCTGCTAGGTGATTGT	ref_5943_new	28	49	37	41	48	27	59	32	56	29
ATCCGTTTGTCAGTCG	ref_5943_new	4	7	2	4	8	3	2	5	5	2
CAGATCTGCTGCTACG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CGCCCGGTACAATTAT	ref_5943_new	91	97	111	117	117	117	138	72	132	95
TAGCCCTTATGTAACC	ref_5943_new	4	5	4	6	6	3	11	4	7	7
GACCTACGGGATGCCG	ref_5943_new	92	141	119	99	148	80	132	88	149	71
TTCTCAGTAAGTGCCA	ref_5943_new	6	13	9	3	3	10	10	7	14	4
GTTCGTTGTTGCATGT	ref_5943_new	10	17	10	2	13	6	6	14	18	6
TAACCGCCGCCGTGGC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TAAGCTACTTCCGTCC	ref_5943_new	3	10	4	3	8	6	8	5	8	2
CTCTACGCACCTCCGA	ref_5943_new	20	35	25	27	24	19	43	20	27	27
TGCGCCTGGCTCTAAG	ref_5943_new	6	12	8	5	8	2	10	11	7	12
TAGTTCGCCCCTCCTC	ref_5943_new	32	55	41	42	36	29	67	34	54	32
ATCACCGGCATTGTGA	ref_5943_new	6	13	9	11	17	10	13	10	17	7
AGTCCCTGTTAACTGA	ref_5943_new	7	24	10	19	18	8	28	14	19	3
GTCGCATGCCTGCGCG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TCCGGAATTAGCTGCT	ref_5943_new	6	11	11	10	11	12	12	2	19	3
TTTCGTTTTAGAAAGG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GCAGTTGCATATGGGG	ref_5943_new	21	31	23	19	41	20	34	25	37	15
CTTTTCAGGATGCCTA	ref_5943_new	11	23	14	18	18	13	12	20	25	14
TGTGTTGCCTGTTGTG	ref_5943_new	45	80	53	42	56	42	76	48	87	44
GCTACCCATACGTCAT	ref_5943_new	4	1	4	1	3	0	2	4	4	0
GCGTCTAGATTTTTGG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GGGGTTTTGGGTGTGG	ref_5943_new	0	0	0	0	0	0	0	0	0	0
ACACTTCTATCTACGC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TTCTACGGCACCCCGG	ref_5943_new	4	6	8	2	6	2	3	5	9	9
TTGATTTAGAATTCAT	ref_5943_new	48	53	57	44	52	39	63	40	77	35
GTTATTCATGAAATAA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CGGGTAGTTGCTCTGA	ref_5943_new	30	26	26	13	16	19	19	14	32	18
ATCGGCGAATTGTCTT	ref_5943_new	24	15	23	14	23	18	28	25	31	10
ATTGGGTAGTTTAATT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GTCAAACTATTTTTAT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
CTGGGCAGGCTAAAAA	ref_5943_new	5	5	9	7	16	8	13	8	11	5
TGACACTTTCTAATTG	ref_5943_new	37	69	56	40	64	34	60	53	54	40
GCTGCTGTCATACATT	ref_5943_new	0	0	0	0	0	0	0	0	0	0
AAGATGTTGGTTGACA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GATTGTCATAGTCTGA	ref_5943_new	52	81	85	62	88	49	67	43	61	45
CCCCTGATGAGCGCAT	ref_5943_new	20	38	39	25	39	24	52	22	31	26
TGAGCAGGCTTGGTCA	ref_5943_new	108	146	160	129	123	114	153	125	143	122
ATTGCCGACGCTGTAA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TAGCACCCCTTTATCC	ref_5943_new	50	61	70	62	56	47	70	36	86	42
TTGCTCGTATTCCTCC	ref_5943_new	0	0	0	0	0	0	0	0	0	0
GCTTCTCGACCCATTC	ref_5943_new	6	11	5	10	15	5	7	4	16	7
GTAAGGAGAGGCACCA	ref_5943_new	0	0	0	0	0	0	0	0	0	0
TACCATCTTAGTTTCC	ref_5943_new	2	7	4	5	7	3	7	1	10	2
GACCTCGGAATTTCAC	ref_5943_new	24	19	18	23	28	23	35	14	26	13
TACGATGACGCCCAGT	ref_5943_new	41	56	46	39	56	43	53	52	52	26
CACTGCCGGGCTTTGA	ref_5943_new	0	1	3	1	0	0	2	0	1	1
TTTTAACCATCTTTCT	ref_5943_new	11	12	4	6	9	6	11	1	11	2
GCGAAACCAGCTTGCG	ref_5943_new	47	91	62	78	79	44	87	39	89	50
GTGAATGCCAGCCTTT	ref_5943_new	34	56	27	36	28	32	51	28	60	18
AGCTTACCCCTCTGAA	ref_5943_new	12	15	14	9	13	9	12	9	20	12
TAGTGACCGCATCTGC	ref_5943_new	9	20	15	12	8	13	12	7	12	8
TCTCTTCACATCGCGT	ref_5943_new	35	40	41	36	37	28	61	37	41	32
TGGTTGTGGTAATCAA	ref_5943_new	31	38	36	31	36	28	36	22	46	29
GGGTATTTTAATCCTT	ref_3703_missing	3	1	3	4	2	1	5	1	6	2
AAAACCGCGTAAGGGC	ref_3703_missing	208	149	308	284	145	294	173	229	166	246
GTGTGCCGATAAAAAC	ref_3703_missing	47	33	75	68	31	44	55	53	49	63
AATGATAGGATAGGCT	ref_3703_missing	101	58	120	91	77	90	79	89	75	86
GCCTCGTTATAGCAAA	ref_274_missing	107	156	147	121	145	101	184	118	186	135
TTCTCCTTATAGCCGA	ref_274_missing	10	19	11	8	9	12	18	13	11	10
CTATAGGATTCTCTCA	ref_274_missing	12	5	5	5	4	3	10	5	4	3
AAGCTACGTTGCCTGT	ref_274_missing	0	0	0	0	0	0	0	0	0	0
CGAAAGCTGTTGCTGT	ref_274_missing	22	28	30	22	36	26	35	26	32	18
TTCATGTCTAGAGTAT	ref_274_missing	0	0	0	0	0	0	0	0	0	0
GTCCATTCCCAGCACG	ref_274_missing	5	11	10	11	8	15	9	6	13	7
GCCGCTGCCGACTCAT	ref_274_missing	6	13	11	12	13	9	10	5	8	9
AGTTTTGGATGGTTTT	ref_274_missing	37	51	35	34	45	38	38	26	44	35
GACTACCCTTCGAAAT	ref_274_missing	3	1	8	2	9	2	4	4	7	2
GCTTGTACACGATCTA	ref_274_missing	0	0	0	0	0	0	0	0	0	0
AGGATGCTAGAGTCCC	ref_274_missing	0	3	0	0	1	0	2	2	2	5
GGTTCCAGCCTCACCG	ref_274_missing	35	50	48	41	59	44	52	37	59	40
CCTGGTTTTCATGACG	ref_274_missing	59	59	83	59	80	70	74	47	87	41
TGTTTCCCCGCGTGTC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TTATGGGTCTGCTGCC	ref_274_missing	18	19	24	14	19	14	29	20	22	18
CTTGGATTGCCTATCT	ref_274_missing	6	3	3	9	7	3	8	2	5	2
ATAATTAATCATTTGG	ref_274_missing	0	0	0	0	0	0	0	0	0	0
CTGCTGGGTTAGAAGA	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TCTGTAATGGCTAAAC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TGCTTTGGGAATGCTC	ref_274_missing	42	57	37	39	50	29	69	33	49	27
CAGTATGTCACGACAA	ref_274_missing	3	1	3	3	4	1	9	0	8	0
TATTGGATTTTCCAAG	ref_274_missing	97	131	126	103	137	89	145	96	139	69
TGGCGAAGGGAATGCC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
CCGCTCCCTCTGTTCT	ref_274_missing	21	49	42	28	49	22	45	22	38	36
TCTCCACGTCTACAGG	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TGACTAGATATTCCGT	ref_274_missing	0	0	0	0	0	0	0	0	0	0
GCTTCAGGGTAACGTG	ref_274_missing	20	29	21	22	20	17	23	19	35	17
TCTTTTCGCTTTTGCC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
AATGACGTTGAATTTC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TGGCGCCCTTTGGTTT	ref_274_missing	38	64	27	32	54	33	54	33	49	35
ACTACAAGTGTAAGGG	ref_274_missing	0	0	0	0	0	0	0	0	0	0
CCCACTCATGAGATAG	ref_274_missing	0	0	0	0	0	0	0	0	0	0
TTCAGGACAATCGTTC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
CTAGTGTGTTTGTTGG	ref_274_missing	0	0	0	0	0	0	0	0	0	0
AATTTATTCTGGATGC	ref_274_missing	1	2	4	0	7	0	3	5	0	3
AGGAAGTCTTGTTGCC	ref_274_missing	19	21	27	25	29	22	30	13	34	21
TGGCTCGGCACCGGTT	ref_274_missing	18	16	17	14	21	9	23	19	14	7
TAGGCTACTCCACCAC	ref_274_missing	0	0	0	0	0	0	0	0	0	0
CACTCTTATTGCAATT	alt_5831_new	9	15	6	20	14	12	18	8	17	8
CGTTGTCAGCGTCCGG	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TTTTTGCCGTTCGGTT	alt_5831_new	5	8	1	7	13	5	3	2	8	1
ACATGTTAGGTTCGTA	alt_5831_new	14	19	11	19	17	8	20	20	18	11
GGCGCAAGTATTACTC	alt_5831_new	1	4	3	3	0	7	3	4	3	2
CCTCCTATATGGTAAG	alt_5831_new	0	0	0	0	0	0	0	0	0	0
GGCCCGGATTCAATAC	alt_5831_new	1	5	7	5	12	5	9	3	11	6
GCCTGCGTTTCAAATG	alt_5831_new	0	0	0	0	0	0	0	0	0	0
CGCACTCAGGGGTTCG	alt_5831_new	6	8	2	4	16	11	9	10	10	5
TAATATCCATTATGGA	alt_5831_new	48	42	42	43	54	43	50	34	64	18
GGTGCCTCGTAATTGG	alt_5831_new	77	92	81	58	106	59	113	55	114	85
TCCTAGGCTAGTCTCC	alt_5831_new	27	25	23	11	18	19	33	20	30	14
CCTAGTTCTTTTACCC	alt_5831_new	0	0	0	0	0	0	0	0	0	0
CCTCAATATTCTGTTC	alt_5831_new	98	152	146	145	177	101	178	123	173	99
GCAGGCTTCATAAATC	alt_5831_new	9	4	11	19	19	10	11	7	10	17
CACCGGAGTGGACGAT	alt_5831_new	15	43	24	22	34	14	52	19	53	16
ATTACCAGGACGGCGT	alt_5831_new	15	10	12	14	11	13	14	9	18	9
ATACACATTTGTAACA	alt_5831_new	0	0	0	0	0	0	0	0	0	0
GTGTTGGTTTCCACTG	alt_5831_new	9	13	15	7	8	10	15	5	17	9
CAAGTTTTGGATGCTA	alt_5831_new	9	10	8	10	15	2	13	6	9	7
TCCAGGCGCTCTGACT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TGGACTTATCTTTGTG	alt_5831_new	0	0	0	0	0	0	0	0	0	0
GGGTCTCCGTACTAAA	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TCTTATGTACCGGTTT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
CATCTGAATGATCGCT	alt_5831_new	16	13	35	19	26	17	19	23	36	17
GATATCGGGCCCCTCT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
GCTAAAATGTTATGGT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
CTGTAAATACCTTCCG	alt_5831_new	34	48	29	43	37	31	34	22	29	26
TATCTTTATAGGCATA	alt_5831_new	11	5	8	6	6	7	7	7	7	13
TCCGGACCACTCACTT	alt_5831_new	0	2	4	0	1	2	3	2	2	0
CCAGCACTGCCAGCAG	alt_5831_new	6	12	12	12	26	6	20	9	19	6
TCGCCGACCTTCGGAT	alt_5831_new	61	91	87	54	98	63	80	57	93	66
GCACAGTCCGTTTGAG	alt_5831_new	83	96	105	75	98	75	108	67	106	70
AGGTGGCTATCTAGTC	alt_5831_new	10	3	6	8	3	1	8	3	4	2
TCTTGCCTGAACACGT	alt_5831_new	15	19	21	7	23	13	19	10	16	13
TTATATACGTTGATTT	alt_5831_new	48	57	50	64	86	61	80	51	77	44
TGGTTTACTCAGGTTG	alt_5831_new	4	4	3	4	4	3	4	5	9	4
CGGGTCTTGTCACAAG	alt_5831_new	2	3	10	12	5	4	10	8	13	4
CCATATGCAAACGTAA	alt_5831_new	0	0	0	0	0	0	0	0	0	0
GGCTTGGGATTGTGCC	alt_5831_new	0	0	0	0	0	0	0	0	0	0
AGGCTATTTATAGGGA	alt_5831_new	0	0	0	0	0	0	0	0	0	0
ACGTAGACAAACGTCA	alt_5831_new	8	6	6	6	6	5	9	7	7	1
TTAACGTCTATAGTCC	alt_5831_new	33	56	52	55	76	34	51	32	74	31
CCGCTTAAAATGCTAC	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TCTTCTCTTAGTTCGC	alt_5831_new	0	0	0	0	0	0	0	0	0	0
GACCTTGTATAGCTTA	alt_5831_new	10	21	14	12	17	9	29	15	22	13
GCTTCACCTTCTGTCC	alt_5831_new	0	0	0	0	0	0	0	0	0	0
CGACCATACGATCCTT	alt_5831_new	23	32	37	40	31	34	34	20	30	37
GAGTCGTCTCCGGGGT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TGGGGAGTTTCATTGG	alt_5831_new	0	0	0	0	0	0	0	0	0	0
CCTGTCTTGACTCTTT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
ATATTGGATTATTGTT	alt_5831_new	64	114	111	78	92	68	105	65	118	65
CCCCACAGGTATAAAT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
AGCGCTGGCTAGGGGA	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TAGGTCTGCTTCTCCT	alt_5831_new	29	38	27	21	34	27	38	33	45	21
AACACGGGTCTGTGCG	alt_5831_new	5	17	7	9	14	8	17	5	21	6
CACACAAAGCCGCAAA	alt_5831_new	0	0	0	0	0	0	0	0	0	0
GTAACTGGTCTCCTGT	alt_5831_new	25	34	41	29	42	22	42	22	43	23
ATTTTGTGCTGATTTC	alt_5831_new	8	5	12	8	10	5	11	6	16	8
ATGTTGGGGTGTCGTC	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TTTGGGATAACTGTTA	alt_5831_new	34	67	33	29	60	33	71	26	82	28
ATCGCCTGCCTTCCGT	alt_5831_new	0	0	0	0	0	0	0	0	0	0
TCTGTTCGGCTGTGCA	ref_3951_reverse	6	12	4	5	6	7	12	5	18	2
ATCTGCAGATTTCTAT	ref_3951_reverse	9	21	12	16	13	12	15	15	16	11
TCAAAAAGGCTTACAT	ref_3951_reverse	116	102	140	112	86	120	104	122	102	96
CATTATGTAGTCGCTA	ref_3951_reverse	20	22	23	29	29	9	24	22	16	23
GTCTGGGTCACCTACC	ref_3951_reverse	7	23	10	6	29	9	24	4	22	5
TCCCTAACCGATGGGT	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
CGGGCCCTTTTAAAGT	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
CTTAATCACAAGCCAC	ref_3951_reverse	22	13	24	13	19	30	23	15	30	18
ACAGGTAAAGCTTTAG	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTTTCCGCGGTGC	ref_3951_reverse	54	54	61	56	46	64	45	56	52	60
TACGTTTTGTCTGTTA	ref_3951_reverse	272	427	358	362	375	315	413	328	427	280
GCCGTGTATCGATTTA	ref_3951_reverse	73	108	93	73	99	63	82	69	88	44
CTCACCCCCTGGAAAT	ref_3951_reverse	23	23	27	22	38	21	33	25	36	26
CCCATCATTGTCCTGT	ref_3951_reverse	29	33	41	18	22	36	34	24	34	20
TGGTACTTGCCCTGCG	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
ACAAGGCAGTTCTCTT	ref_3951_reverse	17	29	34	21	33	27	33	21	34	21
GGTCCGACCTTATTGC	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGTCCTTCTCATA	ref_3951_reverse	9	8	11	13	16	20	12	9	9	7
TCCCTAGCTGGCATTC	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
AAGCTCACTATTATCA	ref_3951_reverse	85	79	79	58	60	82	71	47	81	48
CGGCCTAATCTAGAAA	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
TGGATATTGTCCGACA	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCTAATGCTAGTT	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGTAGGGAGATCC	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
GGGTGTGCTAAAGTCG	ref_3951_reverse	9	11	17	6	11	18	19	11	6	9
GCGGGGGTCAGGACGC	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
TGCACGTTAGCGGACT	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
AAGGGCACATCGGTTT	ref_3951_reverse	12	14	15	5	13	13	11	12	8	8
TACTTATCTGCACCGT	ref_3951_reverse	18	16	17	10	34	12	23	12	32	10
CCATCCCTTAAAGCAC	ref_3951_reverse	45	32	44	38	40	32	36	34	44	34
TAAACATCGCAGTACC	ref_3951_reverse	30	25	45	30	25	35	21	29	35	20
GGGAGAGATCCCGCAT	ref_3951_reverse	166	171	208	161	145	180	155	184	128	154
GAAGGTGCTACTCATC	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
CCGACCGTCTCGAATT	ref_3951_reverse	17	23	27	15	24	27	28	25	28	18
AGACAATGCTGGGTCG	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
GTCTAATTCAAGGCAC	ref_3951_reverse	47	34	42	38	32	45	44	31	35	39
CGGCTTTCGCGTTCCC	ref_3951_reverse	7	10	8	5	11	13	12	6	17	7
GACGCCTGCATTTGTC	ref_3951_reverse	0	0	0	0	0	0	0	0	0	0
TGATTATGCTGCTTGC	ref_3951_reverse	1	1	2	2	0	4	2	7	5	4
CTCTGAAGTATCTCTT	ref_3951_reverse	24	18	19	19	24	16	23	19	13	14
CGCGTTTCTTGTATCT	ref_3951_reverse	4	12	13	8	8	6	9	10	27	6
GGGCTAATGTGTTCGT	ref_3951_reverse	0	1	1	2	1	1	0	1	0	2
ACGAATGTGCCTACCT	alt_4003_RC	27	67	31	23	71	32	68	22	74	24
CGCTTAATGTGATTTC	alt_4003_RC	7	11	5	5	11	4	8	3	3	4
AGTATTTTTAATTTGT	alt_4003_RC	11	11	12	15	13	12	24	11	25	9
TTGGTGAGAATGCGAT	alt_4003_RC	29	62	29	26	55	26	37	16	43	39
ACCACTTCTGTCCTCG	alt_4003_RC	15	29	18	15	23	9	37	16	34	13
AGGTGGACGTACTTGC	alt_4003_RC	23	44	28	31	46	32	44	33	61	23
GTCCCCAACATGAGTA	alt_4003_RC	5	13	12	10	10	11	11	11	23	12
TTTTGTGTGTAATACA	alt_4003_RC	22	50	31	28	53	19	53	28	56	23
CACGAAAATTAGGTCC	alt_4003_RC	9	12	16	8	12	8	15	4	15	6
TGCGTATGGGCCGGTT	alt_4003_RC	10	8	13	7	22	10	22	4	10	15
TTCAATATGGTATCTT	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
TTTTCATTCAAGCACA	alt_4003_RC	8	8	1	9	8	3	13	10	8	6
TTGACCCCTCTCTCAC	alt_4003_RC	10	18	25	10	19	20	20	7	30	13
GCTGGATTAGGCTCTG	alt_4003_RC	6	13	12	2	13	6	15	2	8	1
TTTGGTGCCTCAATTT	alt_4003_RC	1	5	1	3	1	0	4	5	3	0
AGGTTTCTGTCGTCAG	alt_4003_RC	33	69	58	45	69	36	77	30	89	40
TTGTGGATCGTATGCG	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
CCCCCACATTCAGCTT	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
TAGTCGGCAGTCTTCA	alt_4003_RC	10	16	10	14	18	11	24	6	33	8
GCCTTACAAGTACTGA	alt_4003_RC	22	56	36	36	63	31	48	38	59	27
AACTAGGAATACCTCT	alt_4003_RC	11	38	17	10	35	14	35	20	26	13
TTCGCGAGTATAGTCT	alt_4003_RC	12	21	13	9	32	18	22	12	27	15
CCTTCTGATTCGACAA	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
TCTTCAGTGATTCTTC	alt_4003_RC	6	16	16	7	18	14	10	6	18	6
TGGTCACACTATACTA	alt_4003_RC	7	59	22	11	50	13	52	8	59	15
CTGCCGGTCACTTTCC	alt_4003_RC	2	5	4	2	5	6	3	3	6	4
TTCAGCCGTTAATCGC	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
CTCATCCTGTGCAACA	alt_4003_RC	3	18	1	6	16	5	12	4	33	3
TCGAGCCGGCCGTAGT	alt_4003_RC	14	42	23	30	50	15	50	16	44	12
ACACATTTATTTCTCC	alt_4003_RC	37	81	40	31	81	24	73	23	85	27
ACGACTGGACCCCTCT	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
ATCACTTGTGGTTTCT	alt_4003_RC	12	22	15	21	26	16	27	9	24	12
AAATTTCGCAAGGTTT	alt_4003_RC	40	102	61	55	80	50	107	57	112	55
CATCGGGAGGTTTACA	alt_4003_RC	3	10	7	5	10	3	8	7	11	1
CGCGGCCAAGCGGTCA	alt_4003_RC	3	7	5	6	7	2	9	3	15	3
GGTTTCATGTTCTGGA	alt_4003_RC	10	11	10	5	7	8	9	3	22	6
CGGTATGTCCATTCAT	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
ACCAGAGCGGCATGCC	alt_4003_RC	7	34	11	13	47	8	53	7	53	6
ACTACCGTCCCATTAA	alt_4003_RC	4	11	3	5	17	3	7	5	9	2
TTGGGGGCTACTTTAG	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
GGTAACACTCACAGAT	alt_4003_RC	7	19	9	7	7	5	19	4	15	7
GTTAATCATCTGCCTT	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
CATCGGGATTCTGGAA	alt_4003_RC	33	37	24	27	48	16	43	19	53	24
ATCTAGCCCTTCGTAC	alt_4003_RC	20	29	14	10	25	12	31	18	30	11
CCACTTATTTTTTGAT	alt_4003_RC	20	41	18	15	36	17	33	26	35	12
TTGCTTGATCGGTGAG	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
TACACGAATTAGGCTA	alt_4003_RC	73	120	76	62	131	65	143	58	134	72
TGGGTCTTACTTCCGC	alt_4003_RC	3	13	10	9	11	10	10	6	14	5
GTTGGCGCCTCGACCC	alt_4003_RC	0	0	0	0	0	0	0	0	0	0
TCGCCGTGTTCTGAGT	alt_4003_RC	4	0	0	2	2	3	0	2	1	1
ATGACGAGTCCGCCCA	alt_4003_RC	12	19	9	14	20	10	15	7	31	7
CGCGACCTCACTACGT	alt_5952_new	21	24	19	18	21	16	16	17	27	14
AGACTCCACACAAAGC	ref_5952_new	4	6	7	2	18	3	11	6	8	1
TCCAGAAATAGGCGTA	ref_5952_new	16	40	7	19	31	10	39	9	50	14
TTCTTCCATGGGATAA	ref_5952_new	3	4	9	8	13	5	14	5	7	7
GGATTTAGAAATTGCC	ref_5952_new	0	0	0	0	0	0	0	0	0	0
TATGTATCTCAGCTTT	ref_5952_new	25	44	25	19	28	20	36	16	34	18
CGCGGAACATACTTTT	ref_5952_new	35	38	22	29	34	30	40	24	47	31
TCTGGCTTTAACAGAT	ref_5952_new	6	18	10	12	12	6	16	8	22	9
ATCGGCGGACGCATAT	ref_5952_new	0	0	0	0	0	0	0	0	0	0
GACGCGGTACTCCTAA	ref_5952_new	5	15	13	6	16	8	22	3	16	8
TACAAGCTTTGTTGTG	ref_5952_new	3	7	1	2	1	0	5	1	3	2
ACCCATATGCCCCCAC	ref_5952_new	0	0	1	0	1	0	0	0	0	0
TGCAAATTGTTCGAGT	ref_5952_new	27	56	38	34	61	20	47	26	65	20
CGTCGTGGATATTTAG	ref_5952_new	4	6	4	5	6	4	13	2	9	3
AGGCAACGTCTCTAGT	ref_5952_new	1	1	0	3	2	1	3	2	6	0
ATCCTATCCTCCCGTA	ref_5952_new	1	3	4	2	14	6	4	2	3	1
AGGTGCTCCCCCCCAG	ref_5952_new	34	70	56	37	102	48	83	44	93	40
TTCAATCGTTGTTCCC	ref_5952_new	0	0	0	0	0	0	0	0	0	0
TTTTTGCATCCTCAGT	alt_5952_new	19	28	21	24	30	21	40	16	43	24
TTGGTCCACGTCGGGT	ref_5952_new	5	3	3	5	1	1	3	0	9	1
CCCGCTTGATTATTTT	ref_5952_new	9	37	12	18	38	7	30	8	40	13
ACGACCTTGTCCCAAG	ref_5952_new	6	3	4	1	1	4	6	4	2	5
TACTCATGGTCCCGAC	ref_5952_new	0	0	0	0	0	0	0	0	0	0
GCCATCATCATTCGAA	ref_5952_new	13	28	28	13	31	17	30	11	36	17
CGGCACTCACCGCGCC	alt_5952_new	2	16	10	6	25	9	16	10	3	6
CAATTTAGGCCTCACG	ref_5952_new	0	0	0	0	0	0	0	0	0	0
GCTTACTGTGATGGGG	ref_5952_new	0	0	0	0	0	0	0	0	0	0
GTATTATCGAGATATG	ref_5952_new	0	0	0	0	0	0	0	0	0	0
GATATTACCACATTGG	ref_5952_new	4	7	7	5	6	8	15	8	11	4
TTCTAAGGCGCCGCTG	ref_5952_new	9	12	9	3	14	8	8	4	24	3
TGAGTTACATCCTTAT	ref_5952_new	17	20	28	10	30	11	31	9	26	13
TACGCATCCGTTTGGA	ref_5952_new	2	9	9	6	6	4	5	4	5	8
GACCCACCGGTCTGGC	ref_5952_new	0	0	0	0	0	0	0	0	0	0
AGGGGCTACCGTTTAG	ref_5952_new	0	0	0	0	0	0	0	0	0	0
TGATTCTTACATGTTG	ref_5952_new	25	46	17	19	41	24	50	21	53	25
ATCTCTGCCCTTTGTC	ref_5952_new	21	16	9	17	21	7	26	6	23	8
AGATGGACTTGCTGGC	ref_5952_new	0	0	0	0	0	0	0	0	0	0
CAATTTCTCCTTCTTA	ref_5952_new	21	22	34	25	21	28	24	16	19	18
CCGACTTCGATAAAAT	alt_5952_new	30	114	35	21	115	20	125	24	98	16
AAGCTACAGGGCGTTT	ref_5952_new	6	8	10	5	8	8	12	5	11	7
AACTTTTTCTCACTTT	ref_5952_new	8	5	12	12	11	4	7	8	8	5
TTCTGTGTCCTTTCGC	ref_5952_new	0	0	0	0	0	0	0	0	0	0
GATGCCGTATTGCAGA	ref_5952_new	18	25	21	16	26	5	21	9	14	12
TAGTAGCCGGCCTATG	ref_5952_new	23	39	28	28	32	29	53	18	53	24
TAATACAGCCTGGAAC	ref_5952_new	2	3	1	1	4	0	4	5	7	0
AGTCCGGTGTTCGAAG	ref_5952_new	28	51	49	39	45	26	52	21	57	28
TTGCTACAGTCATGTA	alt_286_negative	0	0	0	0	0	0	0	0	0	0
ACATGTTTAAATTTCT	alt_286_negative	25	41	30	24	41	24	33	19	29	21
TACAGCTGGACCATGG	alt_286_negative	14	17	12	12	30	10	30	24	37	19
CTAAATTATCTCGACT	alt_286_negative	14	19	13	11	19	12	22	8	24	12
ATTAGGCAGAGTACAA	alt_286_negative	0	0	0	0	0	0	0	0	0	0
ATGTGTATACTTCTTG	alt_286_negative	15	31	20	19	44	18	30	10	43	27
TGTCTGCTGACTGGCT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GATCGGGTTTGAACGT	alt_286_negative	14	22	23	21	33	24	26	19	28	19
TCTTCTGAGTCATCGG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
ACATCCTGCTTGTCAG	alt_286_negative	2	3	8	6	8	1	8	4	6	4
ACAAGGCACACTTCTC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TTTATGCGGAGATTCT	alt_286_negative	82	109	109	99	128	75	145	83	142	67
ATTTGCTTGAATCGTG	alt_286_negative	0	4	5	1	4	1	1	0	2	0
GCCTGCTTACCAGTTT	alt_286_negative	6	7	5	3	7	6	11	4	14	8
TCGGATGGCTATGCAC	alt_286_negative	9	13	6	1	12	6	19	13	9	6
AACCAAGTATCGCTTG	alt_286_negative	26	31	19	22	50	16	41	20	45	25
ACTAATTCTTTTCAGT	alt_286_negative	12	18	13	13	20	13	27	17	25	14
CGACGTCGGCATTGTC	alt_286_negative	6	3	9	4	1	4	6	2	1	0
GCGCTACGATCAAACT	alt_286_negative	15	19	20	13	26	12	27	16	31	7
GCGTGAGTTTGCGCTC	alt_286_negative	123	202	147	135	233	125	223	114	231	135
CATTGGGGGGGTTATA	alt_286_negative	34	35	18	25	34	19	38	25	29	19
GGTGATACCCGCCTCG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GAAAAACCTTGCATGG	alt_286_negative	2	3	2	1	3	2	2	4	4	1
TGTGGCTCATCTTTTA	alt_286_negative	9	9	8	7	9	10	16	15	23	10
GAATGTCCAAATATTT	alt_286_negative	13	14	23	13	21	16	18	12	21	13
TAAAGCCTGTATGGAT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CCCGGGATACGACTTG	alt_286_negative	19	39	20	16	39	12	24	18	26	29
TACCTAATCTCAAAGG	alt_286_negative	21	22	14	17	19	22	10	5	26	13
CTTCTGCCTGGTTTTC	alt_286_negative	19	59	35	39	42	32	46	28	52	24
CAGGTCGTCGCGTACA	alt_286_negative	14	34	24	18	30	25	30	14	31	23
TTTGACCAACCGGCGG	alt_286_negative	9	31	9	15	26	12	23	8	26	13
AATCACCATGATTCTA	alt_286_negative	6	13	10	9	11	6	9	2	32	7
ACCTGGTTGTTCTTGC	alt_286_negative	3	5	2	3	4	3	5	2	6	6
TATCAACAATTATGCT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CCGGTACATTAGCCCA	alt_286_negative	2	3	2	2	3	1	5	1	4	2
TACTATTCTAAATTTT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TCTACTCCAGTATGGG	alt_286_negative	29	62	39	41	67	33	57	40	81	39
CTGATTTCTTGAGCTG	alt_286_negative	16	30	7	14	18	5	9	18	24	15
GATATTTGACAGCCTC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
ATGCCACCTTGCTCGT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
ATCAGCTATTCGGTAC	alt_286_negative	4	9	6	4	6	8	10	8	8	2
TGATTTTACAGGGATG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
ATATAACGCAGGACCA	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GTCCCCCATCTCCTAC	alt_286_negative	1	0	1	1	3	4	2	5	5	0
CAGTGCGCCGACCCCC	alt_286_negative	1	2	1	0	3	1	3	2	1	0
CTCGTCCATCTGCTCC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TTGTCTTTATAAGCCT	alt_286_negative	10	28	15	14	19	7	26	16	39	16
GGAACGGATAGTAACG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CCCGCAACCTGCCGCT	alt_286_negative	154	312	177	160	318	166	305	139	307	131
AGAACCGTGGGGGTCG	alt_286_negative	39	58	58	35	66	50	52	41	38	39
AGGCCGGTAACTCTGT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CTGCGCAAAAGACGGC	alt_286_negative	23	31	37	18	45	24	34	25	54	20
TTGCTGCGCCGCTTTC	alt_286_negative	4	5	3	2	2	4	5	3	4	2
CAATCACCTCATTTTG	alt_286_negative	11	9	9	8	13	8	16	5	9	13
CTATTTGGTCCTGTTA	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TTAGTAACCTATGTTG	alt_286_negative	32	40	34	30	45	18	34	18	48	18
AAATGGCTCTTCGCTC	alt_286_negative	27	49	50	41	69	37	75	43	50	34
AATGTGGCCACTGCCG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TACGTTCAACTTTCTC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CGCATTGCATATCAGA	alt_286_negative	21	56	33	33	45	32	67	22	65	16
GCCGCTTCGGCTAGTC	alt_286_negative	4	2	3	1	4	0	2	2	5	2
CTGACGTTGTGTTGAA	alt_286_negative	4	6	3	5	11	1	7	2	9	2
ATATGTGGACGTTATT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CACTAGATATCTGTAG	alt_286_negative	36	38	25	43	53	20	59	28	51	26
GCGGCCAGTTCCAGCA	alt_286_negative	9	16	5	7	8	12	13	7	15	5
CCCTGACCTCCATGTC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GCTTCAGGGCGAGCAC	alt_286_negative	17	22	16	14	23	13	14	12	21	10
TTTGTCTGAGTCTCTG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GCTTACCTCTCATCAT	alt_286_negative	1	11	5	0	17	3	18	5	16	2
GTGTTTTATTTACTGG	alt_286_negative	11	20	20	16	14	15	19	16	13	13
TCGGCAACATCTGCTA	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TATGCGGTGGTCCCAT	alt_286_negative	50	58	39	34	49	45	48	35	69	23
GCGTTGCCTGGATGCT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TGCTGTATGGCTTATG	alt_286_negative	5	22	11	5	19	14	17	8	33	11
ATACCTGGTACCGTTC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TAGGGTTCGTTTTGCT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CGAGTATCAGGTCCAG	alt_286_negative	5	21	16	6	9	7	13	7	6	5
GTACTCGACTTGACAC	alt_286_negative	20	76	17	22	78	12	78	12	93	15
TCTTCCCCTTTCCGGG	alt_286_negative	3	12	5	8	23	11	11	7	11	5
CACTGTATATCCTTTG	alt_286_negative	9	14	11	13	18	8	8	9	16	9
TGTTGCAGCAAGTTAA	alt_286_negative	45	68	35	46	66	57	59	38	76	45
AGGATCCACGCTGTTA	alt_286_negative	18	21	19	18	14	11	18	4	31	9
AAATCGTTTGTTCGGT	alt_286_negative	10	23	24	10	23	8	21	8	33	18
TTGTATCAAGACCCGT	alt_286_negative	8	16	8	1	11	4	5	12	15	13
TGCTTATCGATTACGG	alt_286_negative	9	7	17	11	13	10	22	10	8	5
CATATTGTATAGAGCG	alt_286_negative	45	55	39	41	52	38	71	30	76	34
CTCGGGATCAGCGGGC	alt_286_negative	42	46	41	53	51	38	44	31	60	32
CAATATAGAAGCCGCC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GATGAACCAGTACGCT	alt_286_negative	50	94	62	54	106	45	116	60	112	39
GATCTATTGAACAAGG	alt_286_negative	7	10	5	9	5	8	10	6	7	4
GCCACTCAGCTTTTCG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GGCGATACCCGCCTCG	alt_286_negative	114	149	130	88	165	87	151	106	197	89
GCCCCTTGTGAATCTT	alt_286_negative	3	4	5	3	6	5	10	2	6	7
GTAATTTCTGAGAACG	alt_286_negative	57	71	42	52	64	44	68	35	71	34
GAGTCATATAGGGGAA	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GTTGACTAAAGTTGCT	alt_286_negative	0	0	0	0	0	0	0	0	0	0
ATATCGTGAAATTTAC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CACCCCTGCCAGTTCC	alt_286_negative	0	0	0	0	0	0	0	0	0	0
GATCCCAATCTGGCCC	alt_286_negative	6	5	6	5	6	8	18	12	8	1
CCAGTAGCGTAAGCAA	alt_286_negative	3	9	3	4	16	3	17	5	5	2
AAAAATTGTGTTTTAG	alt_286_negative	34	51	38	35	69	33	55	36	65	35
GTGCCTTACTCTGGCG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
TTTGTATATGATTCGT	alt_286_negative	40	45	43	27	38	25	55	28	48	25
GGAAGAGGTGAATCCT	alt_286_negative	12	19	29	15	18	11	21	9	21	16
TTAAGCCCTCTGGAAT	alt_286_negative	8	21	12	11	22	13	27	5	24	17
CTTCGGCGGTACGATG	alt_286_negative	0	0	0	0	0	0	0	0	0	0
CGCTCTCGATAGCGTT	ref_5773_new	16	25	8	11	18	19	23	17	16	21
TGTGCTGATATCACGC	ref_5773_new	43	45	45	40	59	51	58	46	66	35
AACCAATTCTAAGCGG	ref_5773_new	4	20	13	8	19	13	13	6	22	10
TAGCTCCTCCTAGGTT	ref_5773_new	21	20	31	31	29	24	33	22	30	22
CTCGGTAACCTTCATA	ref_5773_new	6	22	9	4	25	3	35	1	28	2
TCGCTACTGTGGTCGT	ref_5773_new	0	0	0	0	0	0	0	0	0	0
ATCCTGTGCATAATTT	ref_5773_new	38	63	40	40	53	25	62	37	56	36
GTCGAAATGTTAACAG	ref_5773_new	0	0	0	0	0	0	0	0	0	0
TGTGGGCAGATCGTCG	ref_5773_new	10	19	8	12	12	7	11	15	11	9
GTATTGCTTCATCACC	ref_5773_new	24	12	16	15	30	16	22	16	25	13
GGCAAAATCATCTTCC	ref_5773_new	27	34	24	23	40	18	26	16	29	16
TTTCAGTATGATCTCC	ref_5773_new	49	75	60	55	70	34	85	38	58	38
ATCGTTTCCAATTGTA	ref_5773_new	90	139	127	93	160	105	158	104	160	85
AAAAACGGTGGTTAGC	ref_5773_new	45	62	49	47	55	29	57	37	65	47
ACAGTCAGCGAGTCAA	ref_5773_new	31	45	33	24	45	24	48	19	47	30
GGGGAGCATTCGAGGT	ref_5773_new	44	20	34	36	38	32	32	24	43	35
CGCTGTCGGGTGGGCT	ref_5773_new	16	42	20	27	27	27	41	30	40	20
TTAAAAAAGTTGCCCA	ref_5773_new	137	294	205	139	253	126	271	143	279	145
ATTTGCGTAGATGGTA	ref_5773_new	4	6	7	3	11	2	4	7	12	5
GTGCCGCCGGTCATTA	ref_5773_new	41	73	44	46	71	30	91	36	75	31
GATTAACCGGAACTAA	ref_5773_new	0	0	0	0	0	0	0	0	0	0
GCATAGCTTCAGCTTT	ref_5773_new	2	4	2	3	8	1	3	4	9	1
CCTCGGTGGTTTCGCC	ref_5773_new	9	10	10	3	6	8	12	6	22	8
TTATTTGTCATACGGT	ref_5773_new	0	0	0	0	0	0	0	0	0	0
TCCGCTTACACCTGAG	ref_5773_new	7	23	22	18	27	12	21	13	27	12
TCTTACACATCCGATG	ref_5773_new	11	20	9	8	20	12	24	9	13	4
TCATTTTGTCCCTCCG	ref_5773_new	0	0	0	0	0	0	0	0	0	0
AGTGAGGATATCATTA	ref_5773_new	0	0	0	0	0	0	0	0	0	0
ATCTATGTCATGTACC	ref_5773_new	1	2	2	1	5	3	3	0	2	2
AACCGTTCTCCAGGGT	alt_5912_new	10	20	11	21	17	19	21	9	18	9
AGGAGTGTCATATCTT	alt_5912_new	9	13	7	5	8	4	9	3	9	3
GCACAAACTGTTTGGA	alt_5912_new	0	0	0	0	0	0	0	0	0	0
GGATTACGATTCTAGG	alt_5912_new	21	37	42	23	35	20	47	37	33	26
GATGCGTTCACCTCTT	alt_5912_new	0	0	0	0	0	0	0	0	0	0
GTATGCTTTTTACTGG	alt_5912_new	41	66	40	30	89	33	58	32	76	33
ACTGAATTTAAGCGTT	alt_5912_new	6	18	6	5	6	8	10	5	13	2
CCGACGATTTTGTTTT	alt_5912_new	3	7	3	6	6	0	11	5	5	6
ATACTTCCTCAACGCC	alt_5912_new	13	27	21	14	27	9	21	9	31	14
AACCACCTTGTTGAAT	alt_5912_new	0	0	0	0	0	0	0	0	0	0
CATAGACACCGGGTAT	alt_5912_new	9	25	9	3	21	12	21	8	17	10
CGTTCCATACCTAGGG	alt_5912_new	6	8	3	4	13	5	12	5	10	2
GTACTGGCGTTTTCCA	alt_5912_new	10	9	6	8	11	6	8	5	8	11
ACCGGTATTTCGCGTT	alt_5912_new	2	9	1	0	6	2	7	4	10	1
TTTCCGGCACTCCAAT	alt_5912_new	0	0	0	0	0	0	0	0	0	0
GAGGTGTCTTCAATGC	alt_5912_new	38	54	41	39	73	29	55	25	78	36
ATCTGTGATTTGATGC	alt_5912_new	0	0	0	0	0	0	0	0	0	0
CCTCATGTTCGGCGGT	alt_5912_new	26	64	39	36	53	31	63	43	68	20
ACTTAATTCATATATA	alt_5912_new	0	0	0	0	0	0	0	0	0	0
TCAGTTAAAAGCGCGT	alt_5912_new	16	45	21	24	32	17	42	16	44	18
CCCTATGTTTCGATAT	alt_5912_new	3	21	10	6	11	3	23	12	19	9
GTCAGATCAGCTGTCG	alt_5912_new	50	83	58	38	84	42	95	30	120	46
AGGTTCCCCGGCCTCT	alt_5912_new	4	6	3	3	13	0	10	3	6	5
GTGTAAAACGGTTTTT	alt_5912_new	7	12	25	14	17	9	17	14	24	6
ATTTGGTGCACTCCCG	alt_5912_new	57	112	57	51	96	54	120	42	103	60
AGGGTGTTCGTCTGGT	alt_5912_new	8	23	14	12	25	14	28	11	21	11
TATTATTCTGTTGTGC	alt_5912_new	0	0	0	0	0	0	0	0	0	0
TCGCACGGTCAAACGC	alt_5912_new	0	0	0	0	0	0	0	0	0	0
CTGAGAAGTTGTCGGT	alt_5912_new	11	22	24	29	32	18	27	12	24	13
GCCCGTAGTAAGTATT	alt_5912_new	40	91	52	49	75	43	84	50	83	49
AGGTACAAACGTATGG	alt_5912_new	29	52	47	31	72	32	65	38	95	37
GAGTTTAGCAATTTGG	alt_5912_new	41	55	45	48	56	35	64	30	73	29
GATGCCCATGAGTGCG	alt_5912_new	4	4	10	2	4	4	4	3	4	3
CAGTATGATATATTGG	alt_5912_new	42	66	52	32	66	27	57	28	91	27
CACAGATCCGGCATTA	alt_5912_new	46	110	85	60	103	43	91	47	91	41
TTTTCATAAGTGCGGT	alt_5912_new	12	31	16	11	20	20	37	21	42	17
TAGAAAACATGCTCCG	alt_5912_new	0	0	0	0	0	0	0	0	0	0
CCTATCGCTTTTCCCT	alt_5912_new	0	0	0	0	0	0	0	0	0	0
GTTTTCATTGGGCTCA	alt_5912_new	9	27	11	8	24	11	22	9	19	5
CCCGCATTGTTTGACC	alt_5912_new	5	21	2	4	23	5	26	0	30	1
AAAATTTGATTAGGGT	alt_5912_new	0	0	0	0	0	0	0	0	0	0
CTCCGTAGAATGTCCC	alt_5912_new	0	0	0	0	0	0	0	0	0	0
TGTCGGTATACTTTAC	alt_5912_new	0	12	3	1	4	2	3	2	13	1
CGTCCTGATGGTCATG	alt_5912_new	19	49	27	19	64	19	58	17	77	17
ATATCCATTCTGGCTT	alt_5912_new	34	62	36	40	83	39	73	22	66	33
GTTGAGCTCCGGCTCA	alt_5912_new	38	56	43	38	55	45	65	35	54	26
TGGTTCTACTCGAATC	alt_5912_new	41	52	42	24	53	30	42	31	58	24
GGTTCAAGTAGAACGG	alt_5912_new	61	125	84	81	132	83	107	66	123	68
TCAGGTGCACTCGTTT	alt_5912_new	0	0	0	0	0	0	0	0	0	0
CTGACTCCAAATGTCA	alt_5912_new	50	104	72	45	99	48	101	42	82	49
CCTTTTGCCCGTAATC	alt_5912_new	23	64	42	26	73	27	49	38	49	45
GGCCAGCCACGTGCGA	alt_5912_new	12	16	19	11	11	7	15	7	28	9
CGCCTCCTGAGTATCT	alt_5912_new	9	5	10	8	3	4	8	10	1	9
ACTGCTATAGTACCAC	ref_3852_missing	8	11	8	5	7	7	15	1	9	7
GTCGAATCCTTCGAAT	alt_3852_missing	0	0	0	0	0	0	0	0	0	0
GGTTGGGGTCCTATTC	ref_3852_missing	26	36	32	26	29	15	42	38	48	24
TGTTTCATTATCCGCG	ref_3852_missing	54	46	59	43	58	44	65	66	43	37
TATGTGGAAAAACCTC	ref_3852_missing	0	0	0	0	0	0	0	0	0	0
GGAAATGTAGGGTCAG	ref_3852_missing	12	6	17	4	7	6	11	6	6	11
GCTAGTATATTCGGCG	ref_3852_missing	63	49	67	45	63	45	61	54	63	33
TGTTTGATGAGCGGCT	ref_3852_missing	0	0	0	0	0	0	0	0	0	0
CTAAAGACGCGATGAT	ref_3852_missing	36	43	31	28	46	31	36	30	31	34
TCGTCGCTGGTTGTTG	ref_3852_missing	11	12	11	12	9	8	12	12	8	11
GATCGAAGGTATAATT	alt_3852_missing	26	29	35	22	27	29	26	28	38	35
TTTTTGCGCCCGGTTG	ref_3852_missing	2	4	1	3	4	4	1	3	2	3
TACGCTGAATCACAAC	ref_3852_missing	26	38	28	13	27	13	26	12	28	23
TTTTGGGGGAGTACCG	ref_3852_missing	32	23	40	20	34	37	24	24	43	22
ATTGACCCCCGCTAAG	ref_3852_missing	20	32	29	25	18	17	22	32	36	19
AGCTTCCCCATTTGTA	ref_3852_missing	8	12	4	5	12	2	14	5	15	8
TCATGTTGTACTCCAA	ref_3852_missing	51	47	65	52	49	45	54	54	69	36
TCCAGTCGGAAAATCT	ref_3852_missing	0	5	4	2	6	1	6	2	5	3
TTAATAGGGTTGTTTG	ref_3852_missing	6	7	5	5	4	4	5	2	10	4
TGCCTTGTATTCGGCT	ref_3852_missing	33	40	39	23	43	39	35	32	50	29
TTTAGAGTTTCGGCAA	ref_3852_missing	26	20	40	40	32	26	41	33	50	40
CGGGTCGTGATCATGA	alt_5832_new	0	0	0	0	0	0	0	0	0	0
CGATCCCCAAAGAATG	alt_5832_new	0	2	1	0	0	3	2	1	0	0
TCCTTCGGGGCGTAGC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
GGCACGTCGAAGCCCA	alt_5832_new	39	31	36	37	43	35	42	27	40	33
ACTTCAATCCCTACCC	alt_5832_new	34	45	42	33	45	22	39	30	49	35
GAGTTAAGGCTGCACT	alt_5832_new	54	67	76	62	75	50	81	59	86	59
AAATGACTGTGTAGGC	alt_5832_new	47	51	71	36	49	32	51	47	52	46
GGACACCGTCTCCCAC	alt_5832_new	22	38	45	32	34	24	36	26	32	35
ACTTGTATCGCGGGGA	alt_5832_new	0	0	0	0	0	0	0	0	0	0
GGTTTCCGTGGAGTCT	alt_5832_new	0	0	0	0	0	0	0	0	0	0
GTAAGGCTCTGGCCCC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
CTCCACAAGGCTGTAA	alt_5832_new	28	21	26	25	37	17	32	32	31	14
AGCAGATTTTTTTTCC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TTTCAGTCAAATTCTA	alt_5832_new	48	39	49	48	67	55	56	44	48	53
ATTGAACCCATTTGGT	alt_5832_new	40	47	48	33	54	38	48	28	38	27
ATATTCCATTTATCGT	alt_5832_new	52	55	65	58	63	52	67	58	73	57
TCATATTGTATCTTTT	alt_5832_new	49	58	50	72	53	50	42	36	44	41
GTAGACAGAAGGTGCG	alt_5832_new	24	24	43	28	28	30	32	41	27	20
TCCTTCCGTTATGTCC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
GGATATTTGGGCTTCG	alt_5832_new	31	41	46	31	30	36	48	42	46	31
CCATATATCCCACGCT	alt_5832_new	0	0	0	0	0	0	0	0	0	0
GCGGTTCCATGTTACC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TGTTGTTTTCACCCTG	alt_5832_new	0	0	0	0	0	0	0	0	0	0
CATCAGTATTTTAGTA	alt_5832_new	12	23	18	14	35	16	27	12	22	10
ATTCCTACGACGATTG	alt_5832_new	59	81	89	76	79	59	67	54	67	65
TGTGCCATCTGAGCTT	alt_5832_new	65	118	78	60	121	55	138	64	151	72
TCTGATACTTAATTCC	alt_5832_new	5	6	19	7	11	1	5	8	3	4
TTCATGGACCTGTCGT	alt_5832_new	0	0	0	0	0	0	0	0	0	0
AACTAGCGAGACGTGA	alt_5832_new	26	42	39	31	29	29	33	26	25	23
ATTTATATTACTGCGC	alt_5832_new	11	14	22	17	18	16	21	17	18	10
GACAGCAATCGTATCG	alt_5832_new	0	0	0	0	0	0	0	0	0	0
CGGACCGATTGTGGGC	alt_5832_new	2	10	0	4	10	1	8	0	14	5
AACAACCCGATAACTA	alt_5832_new	11	15	15	10	15	9	8	9	7	8
ATTTTTTTAGAACGCA	alt_5832_new	89	61	86	61	69	69	87	55	65	54
TGAAGCTGACGAAAGT	alt_5832_new	30	33	46	47	37	40	32	27	31	27
ACAGGGCATTAGTCCA	alt_5832_new	62	67	69	62	70	61	78	44	86	39
CTTATTGTCGGTAACA	alt_5832_new	17	25	13	11	23	15	26	8	23	13
GCTTTTTTCTCTTACC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TTCATGCGCATTTACC	alt_5832_new	12	12	12	15	6	7	17	11	15	14
TACACCGGTCGCTTTT	alt_5832_new	1	4	3	3	2	0	3	1	3	4
TCCGCTACGTCTGGTT	alt_5832_new	20	22	32	23	36	23	24	19	38	16
GGGTGTGTTTGTCTTT	alt_5832_new	3	7	8	6	5	4	7	9	7	2
GCGCCCTATCGTGTTG	alt_5832_new	43	56	45	43	56	25	50	35	77	39
CAAAGAGTGGTGTCGC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
GCGGCTTCTAACTTGC	alt_5832_new	0	0	0	0	0	0	0	0	0	0
CTACTATGTTGTGCAG	alt_5832_new	0	0	0	0	0	0	0	0	0	0
CGTTTTCTGCGTTTCA	alt_5832_new	13	17	7	10	16	16	10	7	18	9
TGAGCATAAGTGATCA	alt_5832_new	30	41	38	30	39	29	45	32	41	34
TATTTACCAAGTTGGG	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TGACGGTCAACTCCCT	alt_5832_new	11	10	16	14	18	7	14	9	12	9
GATGTCTCGTATGAAG	alt_5832_new	18	27	24	38	24	25	29	24	24	37
TAGACATGATTATTAC	alt_5832_new	2	3	4	1	5	5	2	5	1	8
AACGTCGGCAGCTCTT	alt_5832_new	5	5	11	7	4	6	11	10	7	6
TACCGGGTACTTCCGT	alt_5832_new	2	0	0	1	0	1	1	3	1	1
TTTCAATATTCGCGAG	alt_5832_new	19	32	26	16	20	17	30	18	21	18
ATTAAAAGCACACTGG	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TACCCTTTGGTGTTTA	alt_5832_new	39	54	59	39	51	53	55	48	56	42
ATAGTGCGCGGGAACT	alt_5832_new	3	9	2	7	6	6	7	5	9	6
ATTCGTAAGCTCGTAC	alt_5832_new	218	248	258	254	291	209	276	234	290	200
CACCGAATGCAAAGCT	alt_5832_new	11	3	13	5	8	5	8	9	8	5
TAATCAGGAAGGCGCT	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TAGCTCAGAAGGTGTG	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TCATAACGTAGGAAAT	alt_5832_new	14	24	16	11	4	15	9	12	5	15
CGTAACCTGGTCGTTG	alt_5832_new	8	19	8	8	16	6	21	3	14	7
GGACTTCCATGCTATG	alt_5832_new	0	0	0	0	0	0	0	0	0	0
TTGGGGTTTACGCCAT	alt_5832_new	0	0	0	0	0	0	0	0	0	0
GATAGCACTTACCTTC	alt_5832_new	3	4	1	1	2	0	8	0	10	0
TCTGTGGTATTCATAT	alt_5832_new	31	22	27	14	16	19	20	17	19	24
TGCCCCACCGCTAGCG	alt_5832_new	56	60	84	42	78	57	73	41	51	37
CCCCCCATTCGTTCTG	alt_5832_new	8	18	14	9	26	8	31	10	26	15
GACTCACAGACGTTAC	alt_5832_new	19	18	17	10	14	7	13	13	8	10
AGAATTCGAACGTAGG	alt_5832_new	22	25	39	27	38	20	30	30	30	25
TCCTTCGGGGGCGTAG	alt_5832_new	6	17	10	12	10	13	24	10	15	4
TATTTGGTCATGTGAG	alt_5832_new	47	52	44	38	51	32	51	43	49	45
GCACTGCGCAAGCCCA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CTGTCTCCTTGACCGT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TACAATGGTAGTTATG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTAATCTTTCCCATAA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GGTACAGATTTTAATT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTTGAGTTAGGGTTAC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GGGGGGATCTTTGCAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TCGGTCACATTAATTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CGCTGCATTGGGCTAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
AAATCTTCGCGGGATC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CCTTTCGGTTAACCCC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TTATCCCGCATTCCGA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CCCTCGAGGCCTTAGT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
ACTTTAGGCGCAAAGG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTACTCCATGCTCAAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GATTAGCACAGTTGTA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
ACGTGTGATTACCCTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CTTGCGTAACTACTCT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CACGTGGTCCGCATGC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TATAAATTCGGGCCCC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTTGATCTATGTCCTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTGGCCTACAATACTC	alt_2973_missing	15	11	20	15	12	23	14	15	15	17
TCCTCAGGATTCTCGT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
AGGCAATTTCAATTGC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CATTCTAGCCACGTTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CTCTTAACAAATCACA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
AGCACGGACTAACCCC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
ATCCCGGTCGCGTCAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TCAAGTGGTTTTCGGC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CCGGGTTTCATAGCTG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
ATAAGTGTATCGTGTG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTGGGATTAACGCTTG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTCGGTTAAGTTCTCA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTAGCGGACCGAACTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TCTTCGAAGCCTAGCT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TCGCTTGCTGATAGGC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GCTGAATCGTCATCCC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CTTCCGCATCTTGGCT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TAGTATGATGCAAACC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TCCCTATCGATACGTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TTCTCCTCATCATGGC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
ATTCGTGGCCTAAGAT	alt_2973_missing	10	10	9	4	10	17	14	6	8	22
CGTCTCGGGTGAGTTG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TGATAGTTAGCAATCT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CATTCGATAGTCCAAC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
AAATTGGTGCGAGGTC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TCATTTTCGTCGCAAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CGTTTCTCCGCGAAGT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GGGGATCACTGACCGA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CATTTCGGTGTCCATT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TGGTTAAGTGATAAGA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CGCCACGGAACACAAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TTCAAAATAATTGATC	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CCTCGGGCCGCACTAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CAGGTGCCCATTGAGG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TGAGTCACGTACAGCA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CGTTGTGCAGATTTCC	alt_2973_missing	72	55	66	58	62	63	69	56	50	52
ATCTACACGGCCGTGA	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CAAACCAGTACTATCG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
AACCGCTAAGCCAGAT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
AACTGTCCATGGAGGT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
AGAAAAAGCCCAGCTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GTAATTATGTGGACGG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
GCCGTTGATCATGTTT	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
CTATGTTACAATGTAG	alt_2973_missing	0	0	0	0	0	0	0	0	0	0
TCGCCTCCTCACCGGA	ref_6114_new	14	21	17	13	18	6	21	12	29	18
GCCGGGACGTCGGAGG	ref_6114_new	0	0	0	0	0	0	0	0	0	0
TGCGGTTGGTACAAAC	ref_6114_new	7	11	11	11	7	9	12	7	14	10
ATATTTAACGCTTAAT	ref_6114_new	34	69	51	46	77	51	62	38	94	44
GCCGATGCTAAGGGGA	ref_6114_new	48	88	50	61	89	43	86	37	55	30
ACTCTGCGTACAGTTG	ref_6114_new	26	50	26	28	32	26	49	24	59	19
TTAGTTTGCATGATGT	ref_6114_new	65	73	52	61	81	64	77	48	98	61
AACTGGAAGCCAGCAA	ref_6114_new	9	16	12	19	21	10	22	9	19	8
TCAAGTCTACCCTGTA	ref_6114_new	5	8	12	6	18	11	12	3	15	4
AAGGCAGACAGTTTTG	ref_6114_new	49	95	71	51	71	70	108	52	105	58
TGTCTGCTCGGTCTTC	ref_6114_new	17	51	23	15	55	8	47	26	66	17
GCTAGCAGTTCGTTCT	ref_6114_new	28	50	37	37	57	27	51	33	74	21
TAACCCCTCATGATAA	ref_6114_new	47	76	70	52	64	38	75	43	77	54
CCAGGGCATTACGACT	ref_6114_new	12	24	10	9	36	10	27	10	30	17
CCCGACCACAGGACCA	ref_6114_new	16	32	22	13	23	12	30	10	29	11
TGCACCACTTGTGGAG	ref_6114_new	13	20	20	12	18	5	27	7	26	14
GCCACGTACGTCCTGA	ref_6114_new	0	0	0	0	0	0	0	0	0	0
CTTCGTAGATGTTTAG	ref_6114_new	0	0	0	0	0	0	0	0	0	0
CTCGAGGTCTAGTCTG	ref_6114_new	34	52	29	30	59	31	54	31	54	23
GTACTCAGTTTTCATG	ref_6114_new	63	81	53	50	111	50	106	44	102	26
GTTGCGTGTCGCTAGG	ref_6114_new	75	126	89	62	99	67	97	53	105	67
TTCAAATAGCTATTGT	ref_6114_new	42	63	42	48	79	51	68	31	59	33
TTTGACGACTACTATT	ref_6114_new	0	0	0	0	0	0	0	0	0	0
CATCCTGTAACATTAA	ref_6114_new	5	12	16	10	8	12	13	12	12	13
CAGCGCGTCTATCGAT	ref_6114_new	0	0	0	0	0	0	0	0	0	0
CGGTTTCTCAACCGCG	ref_6114_new	38	86	56	44	56	46	72	33	75	37
AAGAATCACGTTTCGA	ref_6114_new	7	18	9	15	17	12	32	14	29	8
CTTGACCTGCGGAATT	ref_6114_new	26	49	30	24	50	26	69	26	65	15
TGTCGAAGGTGATACC	ref_6114_new	45	70	43	41	78	32	70	33	58	33
CTGCCATCTCGATAGT	ref_6114_new	2	22	3	4	26	6	23	6	33	1
TCGGCCTCATCTTTGC	ref_6114_new	19	18	19	14	21	13	27	3	16	8
TGACGACCACACATGA	ref_6114_new	34	68	48	47	68	52	83	34	84	62
ATTCTTAGTTCTCCGG	ref_6114_new	31	35	32	29	32	21	43	26	54	15
CGATGGGTATCGGACG	ref_6114_new	31	57	35	23	60	44	48	37	44	26
CCGGCGGAGATGGTGT	ref_6114_new	138	184	163	126	228	137	214	108	223	143
CGGCAAACCGTGGACC	ref_6114_new	5	9	10	12	13	5	12	7	11	5
TCCCAGGAATTCCCAT	ref_6114_new	14	29	22	21	17	13	29	16	18	18
CGGTTTTTGTGTGATT	ref_6114_new	0	0	0	0	0	0	0	0	0	0
CCACGCCGCAGTGCCG	ref_6114_new	28	53	25	20	55	21	54	25	46	16
GTTCCGGTGAAACTTG	ref_6114_new	6	2	1	2	7	3	2	5	6	1
CTTTCGGCGATTTTCG	ref_6114_new	43	46	39	26	37	27	45	24	46	18
TTCCTGAAGAGGTACT	ref_6114_new	24	32	19	21	31	15	19	14	27	14
ATGGTTTTGGTTTCAT	ref_6114_new	18	14	24	16	13	10	21	13	19	16
GAGGGGCGCTTGCGTC	ref_6114_new	69	105	86	72	92	58	101	57	128	55
GCGTCAGGCCGTATGC	ref_6114_new	32	65	41	27	68	29	42	20	62	19
TATCCTCTGGGGCGAG	ref_6114_new	39	43	31	25	56	28	58	41	62	24
TACGAAGCAAATTAAC	ref_6114_new	28	40	25	34	44	19	37	30	38	26
AGCTCTACATTCTTAA	ref_6114_new	31	73	42	38	75	27	82	27	71	45
AGCGTGGTCAATGTAA	ref_6114_new	0	0	0	0	0	0	0	0	0	0
CCTTTCTGTTTGGGTA	ref_6114_new	0	0	0	0	0	0	0	0	0	0
ACTCACATTTTTGGTC	ref_6114_new	21	54	22	23	53	22	54	18	56	26
TGATAACTGTTATGGA	ref_6114_new	34	72	68	43	72	32	65	57	65	41
TATAATCGCGCTTAGC	ref_6114_new	34	54	45	33	63	28	80	25	67	25
ACTTCTTTGCAGTGTC	ref_6114_new	68	122	76	58	136	81	124	56	119	72
TTTTACTCGAGCTCGG	ref_6114_new	0	0	0	0	0	0	0	0	0	0
GGAGTTTGGTGAAGTA	ref_6114_new	41	92	59	61	95	66	91	34	94	47
TAGTTCTTCGGCCCAC	ref_6114_new	0	0	0	0	0	0	0	0	0	0
TCGCGTCCTCATAAAC	ref_6114_new	0	0	0	0	0	0	0	0	0	0
AGTTCTTGCGAGGGAA	ref_6114_new	27	52	28	21	52	19	49	21	42	23
TGTTTGTTCTATGTTT	ref_6114_new	0	0	0	0	0	0	0	0	0	0
ATTGTCCTGTCGTTCA	ref_6114_new	16	26	12	11	33	18	20	14	29	13
TTACAATTTGCTTGGT	ref_6114_new	0	0	0	0	0	0	0	0	0	0
TGATGGGCTCTGGGTA	ref_6114_new	52	118	81	69	124	70	118	67	138	52
AGCCCCGTCGACGTCA	ref_6114_new	0	0	0	0	0	0	0	0	0	0
ATTCGCTTTTTCATTG	ref_6114_new	51	89	49	56	103	55	99	66	94	47
ATATCGTATTCTTCCC	ref_6114_new	9	13	13	7	17	6	9	8	10	8
GTCGCACAGATTATTG	ref_6114_new	6	2	5	2	3	1	2	1	4	1
CCCCTTCCAGTCGATG	ref_6114_new	84	141	98	87	141	80	133	78	121	64
AAAGGAGCCTTCTAGA	ref_6114_new	0	0	0	0	0	0	0	0	0	0
TCGAGCGATGCTGCTC	ref_6114_new	0	0	0	0	0	0	0	0	0	0
TCTTCACTAGCCGGAC	ref_6114_new	0	0	0	0	0	0	0	0	0	0
CAGTTGCTATTGCGCA	ref_6114_new	10	17	13	15	21	10	19	10	24	7
AATTGGTCCATTTGCA	alt_4894_missing	27	50	42	23	42	40	42	20	50	27
TGATACTATCGAAGCA	alt_4894_missing	79	99	69	68	96	68	118	62	88	69
TCGTCATTGAAGAGTG	alt_4894_missing	36	50	36	30	33	19	41	32	37	23
TGGGCGGCTTATGGCG	alt_4894_missing	32	34	29	30	43	36	26	30	49	24
GTAACTCCTTGTGTTT	alt_4894_missing	12	32	9	15	45	13	29	13	50	8
CGGTTTACGGCGTACT	alt_4894_missing	6	16	12	3	9	12	14	11	8	9
GAGTCCAGCCTAAAGC	alt_4894_missing	31	46	35	23	31	34	51	35	39	35
GGTCATGACGCTTCCG	alt_4894_missing	54	78	72	52	65	41	83	44	80	37
TGTCTCACGTCATAGA	alt_4894_missing	16	33	26	20	32	20	29	27	40	13
TGTTTCATGGTTTACC	alt_4894_missing	31	43	20	23	66	35	51	28	62	25
ATCGTTGAGCCCCGGA	alt_4894_missing	43	65	58	35	68	32	80	35	64	33
CGGGAATTGTGCGTAG	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
CGCGCATGAATCCATC	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
CATAGCCACAGTTGGT	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
GTGTTGATGGGCCGCG	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
CAGATGTCTTCTTTAG	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
ACCTACGGATTTAATT	alt_4894_missing	48	92	63	50	89	35	109	56	93	43
CGCCTCGACGGTAGAT	alt_4894_missing	22	37	28	23	45	23	40	20	30	12
CGCGGCTCACGTTGAC	alt_4894_missing	67	86	76	61	92	59	102	53	92	54
AACTTGTACACAGTTA	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
CGTGAGACTTTTGCTA	alt_4894_missing	22	76	39	26	59	35	92	17	64	29
GACAAACCACTCTCCG	alt_4894_missing	37	78	60	36	68	37	93	36	116	43
GTTGTGGCCGTAGCCA	alt_4894_missing	67	80	73	56	80	62	94	66	79	46
CCTGATTATTTGTGTC	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
GTTCGATTGATCTGTA	alt_4894_missing	15	22	20	17	29	16	25	10	25	19
TCACATATATAGTAGG	alt_4894_missing	8	9	10	16	7	15	20	11	17	4
TCTGGAGCACCAAGTC	alt_4894_missing	7	12	9	12	12	10	14	7	23	7
GCCACTACAACTAAGT	alt_4894_missing	5	14	6	9	14	9	16	6	36	7
TACGTCCAGCGGAGGA	alt_4894_missing	16	27	16	15	34	16	22	10	28	13
TATGGATTGCCTTCCC	alt_4894_missing	4	6	4	3	3	0	2	4	3	6
GCTAGTTGTAAGAGCA	alt_4894_missing	51	76	41	46	79	37	79	35	75	40
AGCAGAACTACGTGAT	alt_4894_missing	41	79	68	54	71	46	81	43	65	40
AAGTGAGTGTGTCGGA	alt_4894_missing	4	14	7	7	6	3	13	5	10	5
ATTATTTTCTTTTAGC	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
TGGCTTATCTCATAGG	alt_4894_missing	22	15	6	9	14	7	18	12	25	6
GAATCTCAACATTCTA	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
TACTCGGGATACCAGC	alt_4894_missing	9	6	13	8	10	0	7	8	6	4
TTCGTCCGCACAGGGC	alt_4894_missing	64	96	68	71	75	45	89	44	94	44
TTGCCTGAATAAATAC	alt_4894_missing	74	179	102	79	160	89	178	81	182	77
GTTGGGCAGACGTGCT	alt_4894_missing	1	9	8	4	13	9	7	7	5	8
TTATGTTGGAGTGCCA	alt_4894_missing	0	0	0	0	0	0	0	0	0	0
TCTTTATCGGGAGGGG	alt_4894_missing	38	43	57	40	48	30	69	26	58	32
TGATTTTAGACGTGTA	alt_4116_RC	35	103	49	35	81	32	96	36	80	30
GGGCCGCCATCACTTG	ref_4116_RC	95	100	90	101	118	70	110	86	125	86
AGTTTGTGCACCAGTA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
AAGCCCGATGCACGCA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
ATTCACAATTGTTTGT	ref_4116_RC	1	5	2	0	0	1	3	0	3	0
AGTTCGTGTGTCAATG	ref_4116_RC	17	36	12	17	47	24	58	25	39	25
TGTGTGGCCAGTAACA	ref_4116_RC	35	65	42	32	73	34	67	39	68	30
TACGGCAGAGTCCTTG	ref_4116_RC	14	34	17	19	29	15	36	21	27	13
TAGTGCCAAATTGTTC	ref_4116_RC	4	11	7	8	18	13	18	6	15	5
TTTTCCAACGTTAGGT	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
TAGGCATTCTTCAGAT	alt_4116_RC	68	93	88	113	87	68	116	62	134	64
GAAGGTTATACTGACT	alt_4116_RC	14	45	18	22	37	13	56	15	38	16
GCGGCACGGTTCGCCA	ref_4116_RC	1	1	3	1	1	0	2	2	1	2
GCATACAGGTGTGTGA	ref_4116_RC	22	64	38	28	77	21	71	19	82	27
CAACCCGTTGTGACCC	ref_4116_RC	9	16	4	11	18	8	20	8	16	6
TATTCCGCGCTAGTAT	ref_4116_RC	31	57	53	37	75	44	82	40	74	33
CACACATGGCAAAAAT	ref_4116_RC	26	64	39	35	55	33	71	35	48	26
GGCGCCTTAGGCTAAG	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
AACAAGACTAATACAA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
TATACGCTTATGAACT	ref_4116_RC	5	16	6	6	15	7	18	7	13	7
GCAAAGCTATCCTTTA	ref_4116_RC	39	54	45	34	66	28	80	38	67	24
TTTTCAGGTCTCTTTT	ref_4116_RC	16	28	15	19	37	18	33	22	40	21
TGTCTATAGATGTTAC	ref_4116_RC	0	3	3	1	11	2	7	1	5	1
GTTTTTCTTAACTGTC	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
CGGTGTCCACTGCATA	ref_4116_RC	15	28	14	4	24	8	23	10	20	27
CCGCATGAGTCATACG	ref_4116_RC	40	60	64	52	67	50	66	49	75	31
ATGATAAATTCAGTTG	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
CGCTTAGATCCGTTCG	ref_4116_RC	23	27	29	28	43	24	39	15	24	15
ACCGGTATTAGTGTTC	ref_4116_RC	10	61	8	8	50	6	65	7	67	6
TGTGTCCGTAGATATC	ref_4116_RC	61	107	80	50	84	68	114	66	99	61
AGCCTTAGCATGTTCT	ref_4116_RC	52	105	60	46	107	37	119	42	102	28
TTACTTGTCTGAACTC	ref_4116_RC	16	21	16	14	16	22	25	18	32	4
GCCTTGGTCTGGCTTC	ref_4116_RC	4	12	2	4	6	3	9	7	5	4
TGATGATATAGGCCCA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
CGTAAGGGTATTAACC	ref_4116_RC	23	29	17	16	28	21	39	13	36	19
CTAACCCCGTCACGTC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
TGAGAGACGGTTGCGA	ref_4116_RC	15	39	32	18	26	15	54	18	47	30
GATCTGCCGAGCAACC	ref_4116_RC	18	28	30	17	28	20	27	22	30	8
ACCCCTCTTCAGGCAT	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
GCTGAAGTAGGGCGCC	ref_4116_RC	18	33	26	26	26	13	28	19	22	17
TAAACGCTTGCGATAT	ref_4116_RC	23	53	27	24	39	26	48	22	46	20
TACTAGGGTTCGTCAA	ref_4116_RC	0	1	9	1	4	3	3	2	5	3
GGCCACGTGTCTTAGG	ref_4116_RC	4	12	4	7	13	2	12	1	14	3
GCCTAGTGAATGGATT	ref_4116_RC	6	23	1	8	12	3	19	7	13	9
TCTCTATCCAATGAAT	ref_4116_RC	6	19	9	10	17	10	16	13	20	12
AGTCTGCTACTACTTA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
TTCCTATCCACTGTAA	ref_4116_RC	3	10	5	5	15	6	12	2	18	4
AGTTATTCCCGGAGTT	ref_4116_RC	27	27	24	19	37	17	38	21	34	12
AACTATGCATCGAGGA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
AACGCGGTAAAAGTAT	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
ATCCGGGGTTTCTTAT	ref_4116_RC	10	13	9	3	7	6	11	3	9	12
TATTGCAAGACCATTC	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
TCCGTTGCCCACACCA	ref_4116_RC	31	58	29	35	41	33	53	36	38	28
CTGTGAAGGATCAAGT	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
CTGCGCAGCGCGCTTA	ref_4116_RC	21	29	19	13	24	15	22	22	27	9
CGCTGGTAGCTTTCCT	ref_4116_RC	30	34	24	21	34	28	56	23	48	17
TTACTTGTCCTTTAAT	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
ATACGCCCGACACTTT	ref_4116_RC	15	21	16	12	21	10	17	20	26	12
CGATTGGGTTTAATAA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
AGTGGTCGGTCGCTTC	ref_4116_RC	26	39	24	22	53	25	30	14	34	25
GGACAGCCATTGTGAC	ref_4116_RC	56	144	86	76	153	67	119	72	146	59
TCGCAACGTGCTCCTT	ref_4116_RC	9	22	26	12	21	16	18	6	13	11
GTTACGGCTTTTTTAG	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
AGACTAAGTCAGTCTT	ref_4116_RC	8	5	10	12	9	3	20	8	15	7
TATTATCCCGTCCCGC	ref_4116_RC	20	28	23	13	19	21	35	19	29	10
CTTGTTAAGGATTCAG	ref_4116_RC	1	7	2	5	4	0	4	2	0	5
CTCGTTTGTAACCGGG	alt_4116_RC	19	38	21	16	51	31	48	20	60	21
GTATGGAACTTGTGGT	ref_4116_RC	3	8	0	3	0	2	1	0	5	2
ATCGGTGTAAGTATCT	ref_4116_RC	36	50	28	44	47	33	57	18	42	17
GCTTATCATTATATCC	alt_4116_RC	20	38	16	7	39	10	31	7	53	12
ATTGTGTCGCTGTCTC	ref_4116_RC	9	4	8	4	10	5	5	2	11	4
TCCCGTGGGCCACAAG	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
GACTGCAGGCCTTAGT	ref_4116_RC	42	46	50	39	53	32	50	30	49	34
GTCGTCAGAACTTGTT	ref_4116_RC	40	58	53	43	64	40	46	42	64	36
AAAATTTTCAAGTGTA	ref_4116_RC	15	22	18	15	22	20	21	16	19	20
GAGCTTCGCTACCTTA	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
ACTGATTGTCCTTGCG	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
CCGAACCACTTGGAGT	alt_4116_RC	7	22	5	5	27	2	24	7	36	4
TTGGGCAGTGAAGTAG	ref_4116_RC	13	7	10	3	7	9	12	5	11	7
GTTGTTAGCTTGCAAG	ref_4116_RC	21	32	28	15	47	23	36	14	36	35
GTCAGCCTAATTCCTT	ref_4116_RC	2	13	4	11	7	4	6	0	15	4
CTTCTCGGTTGCCTAC	ref_4116_RC	30	49	32	29	63	23	51	30	49	25
TGATTAATTGTGCTGT	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
TGCTGTGTCACACGTC	ref_4116_RC	39	61	51	51	69	23	74	26	85	31
CCACGTCACTGCTGGC	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
TTCGGTTTACATGGCA	ref_4116_RC	11	32	23	17	44	12	19	13	16	25
GCTCCTGCCTGCGCAG	ref_4116_RC	4	4	8	3	9	1	9	6	7	5
TTTCACGAGAACAGTG	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
CATGCTCGAGGCGCGC	ref_4116_RC	8	5	3	2	8	2	9	4	4	3
TACGAGCCGCTCCTAT	ref_4116_RC	0	12	5	5	15	1	14	3	9	4
TCTCCCCAAGGGATTT	ref_4116_RC	17	29	7	6	28	5	23	5	33	3
TTCTGAGTGCATTTTT	ref_4116_RC	0	0	0	0	0	0	0	0	0	0
GATGCAGGATGGCACC	ref_4116_RC	5	5	4	3	4	1	1	2	3	3
GTAGCCCAACGTAATC	ref_4116_RC	17	30	14	18	22	16	18	9	29	7
ACAAGACGGGCTCTGC	alt_2582_fdr	18	12	16	17	9	9	10	14	11	10
GATTAATAGCTCGCTA	alt_2582_fdr	40	62	82	60	55	54	66	48	71	46
TCCCGGTGGATTGTAC	alt_2582_fdr	4	33	4	4	26	4	22	10	31	2
GGGCTTAAACTTACTA	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
CCGATTGTATGGGTCT	alt_2582_fdr	9	7	10	6	10	3	12	1	8	2
TGCTTGTGCCGGTTTA	alt_2582_fdr	38	48	44	28	48	39	51	39	51	31
ATGATGGAAAGGCTTA	alt_2582_fdr	4	17	7	4	19	6	20	3	29	0
GATACAAGGTTTCTAT	alt_2582_fdr	27	25	38	30	26	24	23	19	28	32
GTTGTTTGGTCTCTGT	alt_2582_fdr	7	1	11	8	8	3	6	7	7	8
AAATCCGGATCTTTGG	alt_2582_fdr	21	22	28	26	30	33	32	26	28	26
GCGATTGGTGGGGAGT	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTATGCTGGACTCGCG	alt_2582_fdr	45	43	60	35	43	40	63	38	52	40
TCATTTGGCATCCTAG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
GTGGCATTGCTCGACT	alt_2582_fdr	10	10	13	8	9	11	13	13	12	12
CCGGGCCCTTTGACAG	alt_2582_fdr	0	9	1	0	3	1	1	0	3	1
ACCGTTATCAAGGGGA	alt_2582_fdr	105	155	137	115	139	133	143	123	156	95
CTGGTAACTGGCCGAG	alt_2582_fdr	9	9	6	6	11	12	12	5	22	13
GCTTAGTATGTTAGGT	alt_2582_fdr	5	9	6	9	10	6	12	3	10	6
TACAGTACCGATCTAA	alt_2582_fdr	20	25	23	34	35	21	42	32	29	21
GATTTGACGGCCCCTC	alt_2582_fdr	0	0	1	1	0	1	0	0	1	1
GTCTATCTAGTTTATA	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGTCGCATGTTAT	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
CCGAAGACATGAAATT	alt_2582_fdr	37	44	43	47	43	40	42	41	59	26
GTGCGCCGCGGCGTCG	alt_2582_fdr	11	5	16	9	6	4	9	5	8	14
GAAGGCACGTTCTTGT	alt_2582_fdr	10	13	13	9	10	7	13	10	17	7
TGTGACACCCGTGCCT	alt_2582_fdr	7	12	8	6	10	3	6	6	14	5
TGTTGTATCACGCCTG	alt_2582_fdr	2	5	7	1	5	5	2	6	4	5
GACCGGAGGCAAATAA	alt_2582_fdr	0	2	0	4	0	1	1	2	3	0
TTTACACAAGCTTAAG	alt_2582_fdr	22	29	27	28	33	35	29	29	27	23
CCGTTAACCCTACGGT	alt_2582_fdr	48	47	50	45	45	38	51	47	58	28
GGTAACAGTCGTGCAG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TCCACATTCCTCCCAG	alt_2582_fdr	18	12	11	15	8	9	12	12	14	5
TGAGGCGCTAATTGAC	alt_2582_fdr	14	29	17	13	21	18	22	12	19	24
CGGGCCTTCAATACTA	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTACCCTGGCTTT	alt_2582_fdr	33	57	57	33	48	39	59	45	57	45
CATCTACTTTATAGCC	alt_2582_fdr	13	16	12	22	19	18	12	7	24	8
CCCCTCGCTCTTGTGG	alt_2582_fdr	36	45	58	40	42	46	45	51	44	33
CCGAATGGCCGTGAAC	alt_2582_fdr	14	17	11	5	11	3	15	8	21	5
ATGGTATTATTATATC	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTTCCTGTTCCCG	alt_2582_fdr	12	10	10	8	11	8	9	3	13	6
CGCCGTGTGAATCGTG	alt_2582_fdr	0	3	2	5	5	11	7	2	8	2
CGAATACGCGGAAAAA	alt_2582_fdr	12	22	22	13	20	20	17	14	20	23
TAGGTCCCTAAGTGAC	alt_2582_fdr	18	22	26	27	18	19	21	19	22	18
GAATTTAGTCCACTTT	alt_2582_fdr	0	0	0	1	0	0	1	1	0	1
GCTTCGTTAAAAAGCT	alt_2582_fdr	8	23	4	7	13	6	16	11	16	5
TGTGTAGTTTACGATC	alt_2582_fdr	53	60	68	58	63	57	66	52	79	32
CGAAATATAGTGGTAT	alt_2582_fdr	64	68	78	68	71	67	60	57	61	56
CAGAATGCATCTTACC	alt_2582_fdr	13	57	20	30	71	16	69	19	58	11
AGGCTTGCTAATCCCC	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCGTACTCTTTTC	alt_2582_fdr	60	86	49	57	76	44	86	47	93	57
TGTCATCATTCGGTTC	alt_2582_fdr	15	20	28	20	16	22	18	23	18	12
ACAACTGCGAAAAGTC	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGAACCCAGCAGG	alt_2582_fdr	46	42	61	46	53	48	45	33	42	31
ACGTCATCTTCCGGTC	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
GGTTAGTTCATTTATA	alt_2582_fdr	12	28	27	25	27	24	28	24	38	12
GTTCGAGGTCTGGGTC	alt_2582_fdr	22	57	41	33	57	38	41	35	47	35
TGAATTCGGCTGGATT	alt_2582_fdr	23	15	20	13	17	14	21	18	14	9
CAGTGGTACTCTTAGC	alt_2582_fdr	16	20	27	10	14	11	25	19	22	12
AAAGAATTTATGACAT	alt_2582_fdr	88	84	63	81	64	77	75	77	75	73
GGCCCTCGTTTAAATA	alt_2582_fdr	49	103	81	84	106	68	112	61	107	60
TAGGTAAGAAGGGTTG	alt_2582_fdr	64	72	65	63	67	56	61	47	84	57
TTTCTAACTACGAGAC	alt_2582_fdr	10	21	21	21	15	11	9	11	23	19
TAGTTCCGAACAAGAG	alt_2582_fdr	22	39	31	34	29	28	24	22	36	30
TGCGTGTGTGAATCAT	alt_2582_fdr	7	8	10	6	10	5	7	6	3	10
TACCACAGGTTGATTA	alt_2582_fdr	21	25	28	27	36	15	44	26	30	17
GATTGCTTTGACTTCG	alt_2582_fdr	11	15	9	14	19	8	13	3	13	9
AGGAACGTTATGCGTT	alt_2582_fdr	84	83	105	93	99	76	103	83	132	63
GCTCCTGGCGTGTTCT	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCCCTTAGAGTGG	alt_2582_fdr	14	25	17	12	20	17	20	13	13	9
TGGCGTAAACTTGTCT	alt_2582_fdr	7	6	17	15	9	9	7	17	12	5
ATGCTTATGGATAGAA	alt_2582_fdr	0	0	0	0	0	1	0	0	0	0
CCACGTCTCTCTTAGG	alt_2582_fdr	22	80	27	26	63	12	51	21	91	22
GGTCTCAATGCGTCTC	alt_2582_fdr	23	27	31	28	26	29	31	39	32	24
CCCTTAAAAATTTCCA	alt_2582_fdr	28	36	33	28	32	17	58	30	56	30
TAACAGCGGCGCTGAT	alt_2582_fdr	14	10	22	28	18	14	14	16	19	17
CGCCCCAATTGAGTTG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCCCAATCTCTAG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TATTCCATCTTTACAG	alt_2582_fdr	16	23	20	12	19	16	22	13	21	17
TAGCATTCTCGCCACA	alt_2582_fdr	12	20	16	22	25	23	14	21	33	24
AATTAATTTTCCTTTG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
CAGTATGCATACCGTA	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTACATTCACCCT	alt_2582_fdr	19	12	16	21	8	13	16	13	8	13
AGTCTCCATACGATAC	alt_2582_fdr	87	101	76	69	91	69	110	84	92	62
ACATTGGTTTTACCTC	alt_2582_fdr	29	27	38	25	18	23	28	11	34	14
TTGTTCAGTGTAGGGG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
GTGATTACGGCGCTCC	alt_2582_fdr	28	29	27	33	37	30	53	29	36	17
TAACTTCTGCATAATC	alt_2582_fdr	5	16	7	14	9	12	8	8	15	10
CATTGTAGCCTCTGTG	alt_2582_fdr	30	47	26	23	61	20	61	18	47	30
CGTTATAACTGTGGTT	alt_2582_fdr	22	7	30	13	17	21	29	12	21	22
ACGAATTCGATTCTCC	alt_2582_fdr	16	17	23	13	13	8	14	11	12	15
CTCTCGCGAGTTCGTC	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TAATCTGAACTTGCGT	alt_2582_fdr	33	62	43	28	31	36	28	23	45	30
TCACTGACCGGACAGT	alt_2582_fdr	16	10	19	8	16	9	12	7	19	7
ATTACTTTCCCTTGCC	alt_2582_fdr	10	16	19	6	13	7	14	12	14	10
CAGATAGATGGAGCGG	alt_2582_fdr	21	19	38	22	35	20	31	20	27	27
ACCCACTATGTTCGTT	alt_2582_fdr	2	4	0	1	1	2	1	1	1	0
GGTACAGTTCGGTATT	alt_2582_fdr	30	32	35	23	34	21	27	14	39	30
TTAATCACGGTTGTAG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TGCTACAGCTGACCCG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
ACCGTTGTATGCTTGT	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCATTGTTTTTCC	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGCGTCGTTTTGA	alt_2582_fdr	20	22	20	19	26	20	16	17	26	16
GTCTACAATTGGTGGA	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
CGGACATGGCCGTTGA	alt_2582_fdr	136	122	180	149	121	139	119	130	142	134
GTTCTCTTCCGTGCCT	alt_2582_fdr	0	4	4	0	4	2	2	0	0	3
TGGCTTCGAAATGGAT	alt_2582_fdr	202	165	201	177	146	173	212	154	190	171
GCTAAGCAAAACCGGG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGACTGTCCGGTT	alt_2582_fdr	29	17	25	30	38	17	22	21	36	27
CTTATCTCGAGAACTT	alt_2582_fdr	2	6	4	3	4	5	7	5	6	6
GCCGCTTCAATACCAT	alt_2582_fdr	15	26	26	17	33	15	23	28	30	12
CTATGCGGAACGGGCT	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
TGAGTTCACGACTTAG	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
GTATGTGGTCTTTTGC	alt_2582_fdr	0	0	0	0	0	0	0	0	0	0
CCTTTGGGAAGAGTAA	alt_2582_fdr	14	22	12	16	21	11	23	21	24	10
AGTCTTTCAGTTCCGT	alt_396_reverse	11	17	18	18	16	5	24	13	25	14
AGTCATCGGACCTCCG	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
ATATCTTATGCCTAAA	alt_396_reverse	31	60	53	36	58	36	49	28	46	32
CCTACCGGTGTTCGAG	alt_396_reverse	46	114	43	53	117	40	104	35	109	27
CTCTCTGCCGCTAGGT	alt_396_reverse	12	33	20	7	30	11	35	11	38	13
GGAGGAGTTCTTTACC	alt_396_reverse	12	32	22	30	32	18	35	25	48	16
TTCCTTTTCGCAGGTA	alt_396_reverse	18	33	39	37	29	23	26	24	29	28
TAGATACCGAATTTGC	alt_396_reverse	22	30	22	25	34	26	19	22	34	19
GCTCATCGTCAAGATT	alt_396_reverse	36	27	31	20	28	21	43	22	36	18
GTTGCCGGTAAACGTA	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
GTCCGGTGTTTGGACC	alt_396_reverse	40	50	32	28	29	29	47	33	53	39
GCACCGCGCGCTATTC	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
CTAAATCTTCTTTCAT	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
TGACGATTCGTTTCAT	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTGCCGCAAAATA	alt_396_reverse	138	199	181	151	168	161	183	142	210	144
TTCGTTCGTCCTACTC	alt_396_reverse	40	62	64	50	53	31	64	38	75	52
GAGGAGTTTTCTTCTA	alt_396_reverse	43	54	57	47	77	40	39	45	53	34
TAACTTCGTCGTTTGT	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
AGCGAGGTTGTTAGAA	alt_396_reverse	3	7	6	5	10	4	15	3	11	9
CTGGTGACTACACAGA	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
GATGAGTACGCAAAGC	alt_396_reverse	22	14	18	18	23	15	24	11	22	13
CCCGGGTTAATCAGCG	alt_396_reverse	78	87	79	46	87	46	89	52	71	47
GCCCTCTGAATCTCCA	alt_396_reverse	4	14	12	11	14	6	11	8	13	7
CCATATTCCTAACATG	alt_396_reverse	45	46	40	38	48	42	57	36	55	40
GATATTGGACGCTCAG	alt_396_reverse	11	24	11	9	18	16	16	13	24	7
GCTATTCTTTATTGTA	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGGCAGAGCTACT	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
AACAATGTGCCGAATC	alt_396_reverse	64	67	65	52	69	54	74	39	81	32
TTTATTCACCCTTTTG	alt_396_reverse	50	53	69	48	71	38	51	45	63	35
TTCCAGTTTTTGTCGC	alt_396_reverse	28	44	27	14	40	17	35	27	42	16
CGGTCGGAACCTAGTG	alt_396_reverse	63	110	74	54	135	52	146	61	130	38
ACGGTTGCAAACCTAA	alt_396_reverse	0	0	0	0	0	1	1	0	2	0
CATAGGGTTTCGGACC	alt_396_reverse	56	88	75	60	85	65	67	48	80	51
CGCTGTTGCAATTATG	alt_396_reverse	62	57	63	67	77	53	88	48	64	43
TGTCCACATCGCTGTG	alt_396_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGACTTCCGCTTG	alt_396_reverse	13	12	4	8	8	5	24	15	14	9
ATGGCCGAAACCGCTG	alt_396_reverse	44	73	77	58	64	60	74	74	74	55
TGCCACATCGTCTTCT	alt_396_reverse	19	37	25	26	43	22	42	25	41	16
GAAAAAGACCTCCGTC	alt_396_reverse	0	0	0	0	0	1	0	1	2	1
ACTTTACAATGCAATC	alt_396_reverse	21	11	18	13	16	19	18	13	14	8
TGAAGCAGTATTGTGC	alt_396_reverse	3	1	3	1	4	2	6	5	6	6
TTTTTGTTCGTCAATG	ref_5177_missing	7	18	10	10	17	9	23	10	18	7
GCCCAAAAACTACTCG	ref_5177_missing	9	3	2	1	5	3	7	1	4	2
CAGATTTAAACTCTAG	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
TGCTGACATTGCTGTT	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
TCTCTTTCCTAATTTC	ref_5177_missing	3	10	5	8	6	3	7	6	12	6
CCGCTTGTCGCGGGAC	ref_5177_missing	60	75	44	41	67	34	67	43	63	39
TGAGAGTGATATTCCT	ref_5177_missing	47	49	50	41	62	41	54	30	64	31
GGGTCTGGACATTACA	ref_5177_missing	4	20	16	7	15	12	11	9	12	10
ATTCTAGGTTCAGTGC	ref_5177_missing	3	5	6	11	13	3	18	7	12	9
CGGGTTGAAGAGTTTG	ref_5177_missing	14	13	7	5	20	7	16	13	16	5
AGCGTGACACTATGGG	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
TTTGGTCTCCATTTCA	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
TTCCCGCTATGCGATT	ref_5177_missing	16	51	23	21	32	19	22	15	33	16
TCATCCTATCCCGGGG	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
ACCTCCGTATCCAGTG	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
GACCTACTACTCACAC	ref_5177_missing	11	24	21	22	22	10	31	10	20	9
CATGACACAGCGAGTC	ref_5177_missing	11	15	17	10	23	14	22	9	16	16
TCGCTGATCAACTTCC	ref_5177_missing	53	124	64	57	122	64	112	70	173	48
ATGAGTAAGATGCGAT	ref_5177_missing	14	23	18	17	24	16	25	13	23	11
CTCTTTCATATCATGG	ref_5177_missing	28	49	34	26	39	31	42	23	36	32
CTTGAACCCACATTCG	ref_5177_missing	15	24	19	15	27	13	39	12	42	16
TGTGGTCATCAATATT	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
GATATCGGATTCCATT	ref_5177_missing	22	41	28	27	42	29	48	21	51	18
CCTTAATCGCGCTAGC	ref_5177_missing	11	39	22	20	40	14	52	14	44	15
TGGTCCTGGAAAGAAG	ref_5177_missing	17	25	10	14	24	17	28	6	22	12
CGGTATCTTGAATAGT	ref_5177_missing	31	48	37	21	59	29	39	26	61	20
CTTGATTTTCAAGACC	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
TTGGTATATCTGTCCG	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
TTCAGTTTATGATCTA	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
GCTTTGACGCCTCGGG	ref_5177_missing	9	34	30	17	39	21	37	17	40	16
CGACACAGGTCATTGT	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
CGACGCTTATGAGTTA	ref_5177_missing	8	11	4	4	9	2	10	7	12	1
AATGCTTTCGCTGGGA	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
CCCAGGACCACTTACT	ref_5177_missing	3	7	1	1	15	0	12	0	11	2
TTGCGGCACCCTCTGC	ref_5177_missing	3	8	3	5	6	1	5	2	7	3
GTCGATTCGGCTTTAT	ref_5177_missing	7	4	8	3	5	5	13	3	5	1
ACAAAAAGATCTGCAG	ref_5177_missing	6	7	8	4	12	8	15	7	12	2
ATGATACCGTACTTGA	ref_5177_missing	10	19	11	18	15	5	13	8	26	5
TTCTGTGTTAACGTGC	ref_5177_missing	29	46	28	27	46	25	45	26	41	32
GCATCGGGATTGCCCC	ref_5177_missing	20	10	8	6	22	10	24	9	21	3
CATAGCGTACTTAAGC	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
GGTCCGTGTTCTGTTG	ref_5177_missing	36	57	38	26	53	25	48	21	60	20
CTAGATTACCTGTCAT	ref_5177_missing	0	0	0	0	0	0	0	0	0	0
TCTACGTTTAGTTTGT	alt_5853_new	53	103	48	67	84	59	94	46	83	47
GGGCTTTTTGTCTATA	alt_5853_new	0	0	0	0	0	0	0	0	0	0
TAACCGATGACTTTTG	alt_5853_new	16	26	22	8	28	12	21	12	35	12
TAGACTGTGCCGAGGT	alt_5853_new	0	0	0	0	0	0	0	0	0	0
GGGTGTGGGTTCTTGT	alt_5853_new	40	63	53	38	73	40	69	45	72	35
AATTGCCTCGTAAACC	alt_5853_new	4	11	10	8	15	6	11	6	12	8
TAGCTGTACGTGTAAT	alt_5853_new	0	0	0	0	0	0	0	0	0	0
ACCGGGCTTCAAAGGA	alt_5853_new	0	0	0	0	0	0	0	0	0	0
AACTTTATTTATCTTT	alt_5853_new	50	71	53	66	85	41	94	59	96	49
CGTCGGTGGCCGATAT	alt_5853_new	0	0	0	0	0	0	0	0	0	0
ATGACCTCGAGTCCAC	alt_5853_new	27	42	28	36	30	21	31	16	27	22
TCCGAAGGTACATTGC	alt_5853_new	0	0	0	0	0	0	0	0	0	0
TGTTGTTACATTCTGT	alt_5853_new	17	19	15	15	16	17	23	20	13	19
CACTGTTATGTGAACC	alt_5853_new	13	15	12	10	11	13	11	10	13	9
CTTAAATACATTCCTG	alt_5853_new	0	0	0	0	0	0	0	0	0	0
TATGCCTCATACCTCA	alt_5853_new	8	20	8	7	15	7	19	10	18	10
CTAAATACGCTGTCTT	alt_5853_new	0	0	0	0	0	0	0	0	0	0
TTGGCGATTGCATCTT	alt_5853_new	12	41	23	22	29	16	41	21	41	15
CATCCCGCCATCCCGA	alt_5853_new	6	17	7	9	24	7	25	10	38	6
GGGGATCTGCGCGACA	alt_5853_new	7	12	12	11	12	5	17	6	6	11
GATAGTTCAGTTGCAT	alt_5853_new	0	0	0	0	0	0	0	0	0	0
GGGTACCCACGTGTTC	alt_5853_new	0	0	0	0	0	0	0	0	0	0
TATGCGTGCGTAATAC	alt_5853_new	0	0	0	0	0	0	0	0	0	0
CATGTACAAGCTTCTA	alt_5853_new	62	97	73	63	99	53	89	51	95	50
TCGGTGATCTCTACCG	alt_5853_new	183	222	225	209	255	142	233	171	170	164
TTGAAAGATCTTCCAA	alt_5853_new	45	58	33	37	53	30	59	32	56	24
ATTAGTGAGACCTTAC	alt_5853_new	12	24	22	16	28	15	32	11	45	8
TGGGTCCGGTGAAAAG	alt_5853_new	35	39	48	30	57	36	43	42	42	26
TTCGTGTAGCGCTTGT	alt_5853_new	0	7	4	5	8	5	3	1	4	2
GTTTAAGTTGCTTTGT	alt_5853_new	9	7	9	5	8	6	12	5	11	3
TTTCTATTTCGATGTA	alt_5853_new	10	19	7	13	14	10	15	12	10	8
CACTATAGCCCGCCAT	alt_5853_new	0	0	0	0	0	0	0	0	0	0
AAATGGGAAAATCGAT	alt_5853_new	55	56	45	35	57	41	68	40	92	34
ATTAAGTCTTTAGGAA	alt_5853_new	0	0	0	0	0	0	0	0	0	0
TGTGACGTTTAGGGTC	alt_5853_new	0	0	0	0	0	0	0	0	0	0
TCTCAGTTTTTCTTCA	alt_5853_new	0	0	0	0	0	0	0	0	0	0
CAGATAGTAGAATTCC	alt_5853_new	5	6	4	7	6	8	7	2	3	6
TTCAAAGATTGGCTCG	alt_5853_new	34	54	59	38	60	26	63	31	57	35
CATAGTGATTTAGCTG	alt_5853_new	15	37	30	27	50	17	32	17	33	22
TCACTGCATGGTAGTT	alt_5853_new	3	2	0	4	2	3	4	0	5	2
TATGGATTGACCGCAT	alt_5853_new	95	136	127	101	127	93	169	95	129	83
GGAGCGTCACCTGCTT	alt_5853_new	54	98	64	54	80	54	93	52	86	47
AATGTTACCAGCGGTT	alt_5853_new	33	31	38	20	40	21	23	24	44	26
GGATGGATTATGTACG	alt_5853_new	6	10	4	8	12	7	9	8	10	4
GTACAGGCACATTCTG	alt_5853_new	6	12	15	15	12	7	12	12	12	5
TCGAAAGTTTCTTTCG	alt_5853_new	0	0	0	0	0	0	0	0	0	0
ATTGTCAGCGGTTAAA	alt_5853_new	40	65	59	45	88	36	78	30	71	38
ATTTGAGCCCACCACT	alt_5853_new	24	54	32	36	51	40	59	31	44	40
TACGGTTACATTGCAA	alt_5853_new	0	0	0	0	0	0	0	0	0	0
CAGTTATGAGCCTATA	alt_5853_new	39	45	60	59	62	49	55	51	50	50
TGGGATCATAGAATGT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
AGTGACCCAGTGGGTG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
ATCATCCCATTAACGC	ref_5915_new	49	58	44	35	68	39	51	52	57	41
ATTTGAGGTTGAGTGA	ref_5915_new	21	30	17	17	36	15	23	19	25	12
TGTGTCTCTTGTATCT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CTGATGCCGACTGGTA	ref_5915_new	5	7	5	12	17	2	8	4	12	11
GGCGCTTTTACCCCCG	ref_5915_new	35	50	35	26	55	24	34	22	74	23
ACATGGGGCTCTATTT	ref_5915_new	109	169	131	114	174	114	163	121	176	108
ATACTAGGAGTTATCA	ref_5915_new	16	25	10	11	15	13	30	9	32	9
TCTTGGCAACCACGTC	ref_5915_new	42	68	61	26	82	48	76	36	95	41
ACTAAACAACATAGCT	ref_5915_new	7	5	3	2	9	5	4	3	11	1
TGCGACGAAGAAACGG	ref_5915_new	14	33	11	32	26	17	27	20	38	17
CGCTTCGTTAATCAAC	ref_5915_new	18	36	33	28	43	23	40	16	40	17
TATTAACTTGTATCCA	ref_5915_new	7	7	12	13	15	7	16	16	25	8
GGGGGAATTAAAACAG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
GATTGTTATTACTTTC	ref_5915_new	51	75	54	52	76	31	71	53	102	40
AATGCTGTACATTGTC	ref_5915_new	86	124	132	96	151	90	145	85	150	94
AATCTCGCTCACGCCC	ref_5915_new	22	54	29	25	44	22	36	17	56	20
GTTAATTGCTGTTCCG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CTCAATTTATCGTTGG	ref_5915_new	6	11	3	5	6	7	7	5	8	3
CATACAAGTCTCTATG	ref_5915_new	1	4	2	4	2	3	6	1	6	7
CGCGTTCCGTAGTTGC	ref_5915_new	26	43	21	18	49	28	41	31	48	24
TCTATCTCATGTGTGT	ref_5915_new	25	33	21	24	52	12	34	20	39	23
GATGTTCTTTGGTCTT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CGATTTCAGGATCACC	ref_5915_new	24	35	23	20	34	32	29	26	26	16
GGGAGATGTGACGCTT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
ATGTGTATTTGGCCCA	ref_5915_new	87	179	120	73	156	88	145	74	165	91
CATCTTCGCGGCATTC	ref_5915_new	11	14	8	10	14	13	12	11	16	11
TTGACCCGATATAGAA	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CGTTCTCCTATGGCCG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
GTCTCTTTTAGATGAC	ref_5915_new	0	0	0	0	0	0	0	0	0	0
GAGTCCCTGAGAACAT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
AGGCCCCTTTTACTTG	ref_5915_new	79	120	120	93	109	86	131	91	123	73
TGGTTGGGCTATATAC	ref_5915_new	25	47	35	23	34	21	42	18	39	31
ATGATCGTCCTTGGGC	ref_5915_new	12	10	5	5	14	5	10	7	11	4
GAGGCGGGCAGAGATT	ref_5915_new	52	84	63	54	58	38	80	37	79	30
TAAATCTGGTGATGTG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CGCCCGGTCGTCACGC	ref_5915_new	43	157	63	51	155	37	156	57	168	42
TACGTACAACGTTGGG	ref_5915_new	10	8	4	6	3	4	4	6	6	3
TTTTGTTTTCGTTGAC	ref_5915_new	9	19	14	17	16	20	25	14	25	14
ATTCGTCCCGCACCTT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CTCCGATTTCTTGTTG	ref_5915_new	14	17	10	6	18	8	18	10	12	7
ATGGTGTTCCGTAGGC	ref_5915_new	13	14	7	10	14	6	6	5	17	6
TGGATTTCCGACTGAT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
ATTTGGAATCTTTTCC	ref_5915_new	2	1	1	2	1	1	4	3	3	0
CTCTAGGCAAAGTCTG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CCAGACAGGCCTAGGT	ref_5915_new	27	36	29	16	39	21	33	14	47	16
GAGAAGTTTTTTCAAT	ref_5915_new	9	35	22	16	36	22	37	12	50	25
CCCGACGGAGGCTTTT	ref_5915_new	15	34	17	16	37	7	34	15	53	18
TGGGTATCAGTTTGAT	ref_5915_new	4	9	7	7	8	8	10	5	10	6
CACTTAGCCTCCTTAT	ref_5915_new	8	17	13	10	21	9	22	11	33	10
TAGCGTTGTGGACCGC	ref_5915_new	46	85	60	70	89	58	111	64	91	40
GCGTCGCGCGATCGAG	ref_5915_new	1	9	14	6	8	1	2	3	6	8
TTTAGACCTTACCAAG	ref_5915_new	10	12	18	16	18	14	20	12	11	9
TGTGATTGGTAAAATT	ref_5915_new	7	13	11	6	10	14	24	13	17	10
CTCTACCGATCTTTCG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
TTACATGAGGTCTTGC	ref_5915_new	4	3	2	0	2	1	9	1	4	1
TTGAATGAAGCCTTCG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CTAGATAAGTGAGTCA	ref_5915_new	0	0	0	0	0	0	0	0	0	0
AGCGTTGGGTTCTCTC	ref_5915_new	63	107	77	57	85	63	96	47	106	59
TGAGCTTGTTTCCGTC	ref_5915_new	0	0	0	0	0	0	0	0	0	0
GTGTAAGAAGCTTCTA	ref_5915_new	51	78	63	56	90	67	84	53	115	47
GGGTCGCTACCCATTT	ref_5915_new	19	33	25	19	24	16	28	17	32	19
TGGTCCACATAAAATC	ref_5915_new	8	12	5	8	9	6	9	5	12	5
ATCAGGATTAGTGTAT	ref_5915_new	5	16	7	15	20	19	15	10	13	10
CACAGCACGCCTTATA	ref_5915_new	0	0	0	0	0	0	0	0	0	0
CACCACCCTCTGTTAG	ref_5915_new	16	47	19	18	32	14	32	12	29	25
TTTTTATCTCGACGTT	ref_5915_new	196	144	248	225	138	180	119	149	130	163
GCTTTCCAATTCGTAG	ref_5915_new	0	0	0	0	0	0	0	0	0	0
TGTTGTCGGATTTCTC	ref_5915_new	18	22	25	11	19	21	17	11	26	17
GTCTAACTTCAGCGAT	ref_5915_new	0	0	0	0	0	0	0	0	0	0
ACTAAGAATGAAGCTA	ref_5915_new	6	7	8	4	4	5	5	3	5	4
CTTTTTGTTACGTGGA	ref_5915_new	9	17	13	7	16	6	27	8	18	14
TGGCTGACGCTTGTTA	ref_5915_new	0	0	0	0	0	0	0	0	0	0
TGACGTACCCGAGAAC	ref_5915_new	24	51	26	24	37	33	40	16	47	22
CGCGCATACATCTTGT	ref_5915_new	23	39	36	28	28	15	35	14	43	28
GGCTCCTGGGCTTTCA	ref_5915_new	21	27	32	19	41	34	29	30	52	15
TATCTAGGTCTCCTCG	ref_5357_missing	69	83	83	98	87	60	83	74	77	48
TGTCAGCGTGATTCAT	ref_5357_missing	37	21	35	27	29	23	38	28	50	40
CTGAATTATCGCAAGA	ref_5357_missing	74	108	102	88	79	81	77	90	92	75
CGTGAAGCAAGGGCTT	ref_5357_missing	125	131	173	116	141	86	140	109	146	97
ATCGCCTTATGACCGT	ref_5357_missing	40	45	47	38	42	38	56	38	53	39
TGGTCATGCAATTGTC	ref_5357_missing	14	6	9	7	7	10	7	6	7	9
GAAAGCCGCCGGATAA	ref_5357_missing	25	44	46	35	40	40	35	31	48	32
TCCCGTTGGGTTCGTC	ref_5357_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGGGTAAAACCC	alt_1787_fdr	21	21	14	17	31	18	29	9	29	17
TCAAGATGAGGCTATT	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTCACTTACGTT	alt_1787_fdr	31	35	49	31	36	23	41	29	33	32
AATCAGTTGCTACTTA	alt_1787_fdr	106	103	129	105	104	92	102	86	129	58
ACTTTTTCTTTTACAC	alt_1787_fdr	11	8	24	7	15	10	10	8	7	12
TTCCAATTGAAGCACG	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
TACGATATAGCAAAAA	alt_1787_fdr	9	9	14	6	8	7	14	4	11	11
TGGGTCTTTTACCTGC	alt_1787_fdr	37	83	66	56	76	51	71	46	59	46
ACTCGGGTGCCCGTAT	alt_1787_fdr	27	28	39	28	45	32	39	37	30	30
CTCGGCTGGCCTTAGC	alt_1787_fdr	18	26	35	29	16	20	27	19	17	15
TCTCCCAGAGAATATG	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGCGCTTAAACCA	alt_1787_fdr	29	28	40	27	40	22	35	30	24	28
TGTTGTCGAACTCTCA	alt_1787_fdr	87	79	84	65	63	75	74	57	80	63
TATTTCGGGCAGAGGG	alt_1787_fdr	29	19	30	20	23	23	17	19	34	23
CAGCATTGGACTTTTG	alt_1787_fdr	33	40	36	27	41	25	36	32	42	24
TATCTGCCGGGATCCA	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
AATGATGGGTTGGAAT	alt_1787_fdr	5	0	0	2	4	0	1	2	0	2
TAAACAAGTCTCTGCG	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
AAAGCCGTTACCTAGT	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
ATAATAATAGTCTGGT	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
GTGGGCATTTTTGCCG	alt_1787_fdr	35	48	43	25	36	38	30	33	38	19
CGTGTTTTACGGCTAC	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGCTTAAGTGTGT	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
CGAGCGATGTAGAGTC	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
AAGTCTTATACCATTT	alt_1787_fdr	42	31	33	32	34	37	30	25	35	34
CTGCGAGCAGGCTGGT	alt_1787_fdr	47	35	42	42	45	41	50	37	39	28
TCTAGTAGCGAAATGG	alt_1787_fdr	16	24	35	21	26	24	21	20	23	21
TATACACAAGCGGAAT	alt_1787_fdr	80	83	86	93	101	98	77	72	80	90
TCAAGTTAGGTTATAT	alt_1787_fdr	72	95	91	101	88	63	83	84	84	64
CATAGGCATTTGACCT	alt_1787_fdr	56	59	83	65	75	56	60	55	76	54
CGTCCAATTTGTTGTA	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTCGCCCTAGAA	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTATAACTGGGAT	alt_1787_fdr	22	22	32	39	29	17	35	24	36	31
TTCGATATCGCACCCG	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
CATTTTAACTTAGACC	alt_1787_fdr	2	1	9	2	2	1	4	5	5	4
AGTGATGCACTGCGCA	ref_1787_fdr	45	23	47	43	43	33	48	40	41	27
ACAATTGCCCCGGCCT	alt_1787_fdr	30	36	28	38	35	37	34	22	35	25
CTGCCGTCTTGCAAAG	alt_1787_fdr	0	0	0	0	0	0	0	0	0	0
GACCACCTTTACCTAG	alt_1787_fdr	91	101	67	51	111	63	134	76	150	53
AGATGTGGCTTACAGC	ref_5695_new	11	10	7	11	14	11	10	13	8	10
AATAGGTTCTCGTAGG	ref_5695_new	60	80	75	63	49	40	73	58	74	64
TGATCGGTATGTGGCG	ref_5695_new	4	4	10	9	3	6	10	2	9	2
ATATTGCAATTCGTGG	ref_5695_new	103	80	129	87	93	103	93	76	95	80
CTCCGAGACGGTATCT	ref_5695_new	0	0	0	0	0	0	0	0	0	0
GTTGTTTGGTGTAACC	ref_5695_new	24	24	42	25	21	21	40	33	30	25
CAACCCGCCGAAACGA	ref_5695_new	9	12	5	4	8	7	3	5	8	5
CGGTACGAGACCTGTG	ref_5695_new	51	34	57	42	41	44	45	41	37	29
TCGGCATCTCGCATAC	ref_5695_new	0	0	0	0	0	0	0	0	0	0
AAATTTTCATGTAGTA	ref_5695_new	48	52	76	67	56	77	43	50	58	71
TGTTGCCTTAGTGCCT	ref_5695_new	34	26	34	37	35	28	34	41	27	32
TCCGAGGATGCTCTCT	ref_5695_new	18	18	23	15	17	23	20	9	19	10
GCCCTTCGCAAGCATA	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TCGTACCTTGACGAGT	ref_5695_new	7	7	10	4	5	3	5	5	3	5
CGCTTTGAGAGTCGCG	ref_5695_new	3	0	0	4	5	2	1	0	2	3
TTATGTGATAATGACT	ref_5695_new	0	0	0	0	0	0	0	0	0	0
CTTGACGTCAGCCATT	ref_5695_new	145	129	157	147	145	150	143	129	173	138
TCCAGGGCTTCACTGC	ref_5695_new	9	6	11	4	9	8	7	11	12	9
CCATTAAGGGGGGCCC	ref_5695_new	0	0	0	0	0	0	0	0	0	0
AGGGCCTGAATTGTCT	ref_5695_new	137	129	192	189	152	127	158	132	142	122
AGAATGCTCAGGTGCT	ref_5695_new	14	12	15	13	11	13	12	20	17	13
CCTGTGAGCCTGACGT	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TTAGCCCTGGGATAGC	ref_5695_new	66	57	103	77	56	52	77	64	63	76
TCCTACCTATCGCCGA	ref_5695_new	31	16	25	28	30	27	15	15	24	34
TTCCACCGTTGTCAGC	ref_5695_new	0	0	0	0	0	0	0	0	0	0
AGACTCTTGACTGTGC	ref_5695_new	0	0	0	0	0	0	0	0	0	0
ATGTAATCAGGTTTGG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
CTGTCTTAGTGGCTTA	ref_5695_new	11	7	19	9	4	13	8	10	8	9
GCTTCAGAATCAATTG	ref_5695_new	13	19	22	18	10	18	18	12	25	23
CGCAGGTCCAGGTCTC	ref_5695_new	20	21	19	27	33	20	33	15	17	22
GCCAGAACATCAGATT	ref_5695_new	0	0	0	0	0	0	0	0	0	0
CGGCGTCGCTGTGAGC	ref_5695_new	18	11	10	7	6	11	11	4	13	11
GGCATTACTTGATCGG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
GCTGTTTTATTCGGGC	ref_5695_new	49	43	69	63	45	48	45	48	48	41
CTAACTAATAATTATG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
CGCCCGTTGTTTCGTT	ref_5695_new	0	0	0	0	0	0	0	0	0	0
ATGCGGTGGCGTTACG	ref_5695_new	149	106	161	133	147	125	107	130	105	114
GTATACTCGAGTCGTT	ref_5695_new	26	17	45	27	28	27	30	19	25	20
CGGTCGAACGTCATTG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
GGTGTTCAGTGATTCA	ref_5695_new	13	8	17	15	10	9	14	22	13	12
CCATTCACGGCTTATC	ref_5695_new	53	44	67	55	69	47	41	52	56	41
ATGTCTTAGTATCCCG	ref_5695_new	2	5	4	2	6	2	1	3	3	3
TCAAGTTTTACGCTCG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TTTTACATGATGTCGC	ref_5695_new	81	66	115	94	93	75	82	90	79	87
AAGGTTCCTTCATTAA	ref_5695_new	38	33	47	49	35	47	35	46	32	33
ACTTGGTAATCGTTCA	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TATGCATTCGCGGTAG	ref_5695_new	30	24	20	25	26	19	19	19	18	23
GGCTAGCGGAGAATGG	ref_5695_new	9	12	15	14	8	8	5	14	10	12
AGTATCTCTTTAAGTC	ref_5695_new	39	24	46	31	28	33	20	31	39	38
ACGAGAAGGAGTTATG	ref_5695_new	12	4	14	11	3	9	3	4	8	3
CCACTATTCCACGCTG	ref_5695_new	8	4	8	9	9	4	8	14	4	11
TACCGAAAATTATTTC	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TATTGGTCTCTCTAGA	ref_5695_new	0	0	0	0	0	0	0	0	0	0
AGTTATGTTTTATTAA	ref_5695_new	18	19	16	14	16	20	12	7	11	16
TGCACGTCACGATGCC	ref_5695_new	77	61	118	95	66	96	79	57	84	76
GGCTTCGCACTGGTCA	ref_5695_new	28	23	42	16	29	35	27	25	30	20
CAATGGCTTGAGCAAC	ref_5695_new	26	21	22	37	13	28	26	25	30	18
CCTTTTCATATGGGTG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
ACCAACGCCCGCTAAA	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TTTTTCTACATGGGAT	ref_5695_new	31	20	27	31	17	18	25	20	27	22
AACAGTAAAGGGCCCT	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TAGCAAGATCGCTTGC	ref_5695_new	64	66	81	57	67	68	86	49	87	63
CGTTAACCAGGTTCTT	ref_5695_new	6	3	1	5	4	2	3	2	1	2
CGATGGGACCTGTCAG	ref_5695_new	40	44	63	49	53	53	50	35	46	44
CATTATATTCGTGGGG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TTTTCAGGCGGAATGT	ref_5695_new	126	123	132	126	123	135	99	126	82	101
AAAGCTAGGCTATAGG	ref_5695_new	24	14	19	10	18	13	16	13	14	18
CACGGGATCAACGCAG	ref_5695_new	10	9	14	7	17	11	20	9	9	5
GAGCGGCGCTGTTGCC	ref_5695_new	82	104	90	98	97	84	121	77	98	75
GGCCAACTATCTATCG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
CATAGTGATCTAGACA	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TGGGCTTGGGTTCATG	ref_5695_new	0	0	0	0	0	0	0	0	0	0
TCCCCACAAGTTCTTT	ref_5695_new	56	48	67	60	51	46	42	70	53	54
TCGGGACACAAACGAC	ref_5695_new	9	6	7	1	5	7	10	10	7	8
ATAGGTGGACCTACTG	ref_5695_new	8	7	9	5	6	10	8	4	9	11
AATTTGACAACCTTTT	ref_5695_new	10	7	21	11	8	15	14	7	13	9
TTAGCCCGATAAGCGG	ref_5695_new	6	4	2	0	2	3	0	4	1	1
ATGATGGAATTTGTTC	ref_5695_new	0	0	0	0	0	0	0	0	0	0
GATGATAATGCCAGAT	alt_3685_reverse	49	40	42	31	38	36	46	26	64	40
TACTTCAGCCGAGTCC	alt_3685_reverse	109	189	170	149	204	140	201	156	222	122
AATATATTGGACAGTA	alt_3685_reverse	58	91	92	57	84	61	107	80	114	61
CCCCATAAATCTACTT	alt_3685_reverse	4	40	6	5	38	3	30	1	29	5
ATGCTCCTATAATGTG	alt_3685_reverse	18	17	22	12	21	19	18	15	27	14
TGTTAGTCATGGCGTG	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCGTTTTAGTAGG	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
GTCATCCCCGCGTAGG	alt_3685_reverse	9	21	9	6	28	6	22	5	23	13
TATCCTAGGGTATAGT	alt_3685_reverse	62	85	84	65	79	65	91	54	103	68
AATCGTAAGGAAACCA	alt_3685_reverse	140	184	194	193	170	195	208	170	227	176
TCCAGGCCCCTATGAT	alt_3685_reverse	63	57	65	70	76	55	76	52	65	48
AGGCCTCTACATTTAC	alt_3685_reverse	41	48	32	25	60	29	53	19	60	30
GAGTGGGATTGTTTTT	alt_3685_reverse	206	286	243	198	307	229	311	214	259	199
GCCTTACCTTCGGACC	alt_3685_reverse	16	53	35	29	61	20	61	23	75	31
GGTCCCCCGCCATATT	alt_3685_reverse	35	52	50	48	55	42	46	35	53	39
TTAGTTGTGTACCCTT	alt_3685_reverse	53	72	64	43	79	40	75	30	81	37
AAGGCGCTATCCAGTG	alt_3685_reverse	46	46	59	33	46	36	66	25	57	27
ATGAGAACTTTCCGTT	alt_3685_reverse	5	9	10	4	20	11	13	9	8	5
ATTTTCCACACTTACC	alt_3685_reverse	21	112	32	24	146	14	122	14	126	16
CATGACTGGCTCCTAT	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
TACACGGCTCATACTC	alt_3685_reverse	1	6	6	6	7	4	4	2	5	1
TAGCCTTTTTGCCCGC	alt_3685_reverse	47	63	51	39	70	44	64	48	64	64
ACTCACCCCTTTCCTC	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGTGCACGGATCA	alt_3685_reverse	7	4	14	10	9	2	15	3	5	12
GCCTATTATTTATTTT	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTTGACGGAGTTG	alt_3685_reverse	4	2	4	6	9	4	4	4	7	4
TTCTTATGTGTTGGTT	alt_3685_reverse	28	31	27	41	48	18	34	28	26	21
CAAAGAGGGGCGACAA	alt_3685_reverse	55	69	76	64	55	50	70	49	59	49
TCTAGTACAGTTTAAT	alt_3685_reverse	0	1	0	2	5	1	4	0	1	0
GGCCGTTCTTCTATAG	alt_3685_reverse	9	11	5	15	13	11	15	6	20	4
TTCGTACTCGTGCCTT	alt_3685_reverse	2	5	8	1	4	1	11	4	5	3
GATAACTCGGTGCCGT	alt_3685_reverse	31	42	51	39	47	28	60	36	47	34
TGTTAGTCTGGTCCTG	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
CCTCTATTGATGGGCT	alt_3685_reverse	22	31	23	24	35	17	26	17	33	15
TCACTTGGTGAGTTGG	alt_3685_reverse	38	47	43	31	59	32	42	35	47	34
ATTTATTTCCTGCGCT	alt_3685_reverse	20	26	20	29	24	21	25	26	32	19
CGTTAGGCACGGATTA	alt_3685_reverse	15	8	13	14	16	15	7	7	16	4
CACCGGACATCTGTTC	alt_3685_reverse	3	15	9	8	19	6	19	3	23	4
ACCCCAATCGGTGGTA	alt_3685_reverse	177	175	154	163	168	153	165	151	189	117
ACGGCTTCAACGGCTT	alt_3685_reverse	29	22	38	22	26	27	37	18	32	21
GTTCGGTTCTCCAGCG	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
TGTACAAAATTAATGA	alt_3685_reverse	26	34	32	23	35	25	37	25	44	28
TCTAACAGAAGCTTGT	alt_3685_reverse	10	9	20	29	14	7	19	5	24	13
TCAGCCACTTGCGAAC	alt_3685_reverse	0	10	0	5	16	0	8	0	12	0
CGTCAAGGACGGTGTT	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
CGATTAATGAAGCGAG	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCAGTCCCCGCCG	alt_3685_reverse	1	5	2	0	7	1	5	0	1	0
GCAAAGATATCCGGGG	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
TGCGGCGCTCCGCTTG	alt_3685_reverse	2	6	2	2	1	5	4	3	1	0
TGTTATTCGAGCTGAG	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
TGTGCGTGGCACTTGT	alt_3685_reverse	12	41	39	32	46	42	32	24	38	30
TCTAAACCGTGTAGAC	alt_3685_reverse	24	47	46	48	58	31	35	28	47	25
TGTCCGCTAGAAGTCC	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
AGCCCCGGGTCCAAGC	alt_3685_reverse	13	22	18	6	20	12	24	15	23	9
CCTGGCAGGAGAAAGA	alt_3685_reverse	5	8	3	8	6	8	16	1	9	4
GCAAGTCCTATCGTCA	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
CTTTATTCCAGGTTGC	alt_3685_reverse	28	48	40	33	59	42	52	33	56	24
GGGGAATGTCTAGTTT	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTTAGCAAGGGAT	alt_3685_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGCGTGACTCAGA	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
AGCGCAATTACCGGCG	alt_3659_missing	29	80	33	22	69	19	75	35	81	25
CTTAGGTTGCCCCTAT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
ATGAGCGACGATTTGT	alt_3659_missing	14	12	9	13	22	6	19	7	24	3
ACGGCAGATCGTATGA	alt_3659_missing	15	38	19	16	34	17	27	24	36	11
ACCGCTTCCCACCGTT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TACTGACTAAATCAAA	alt_3659_missing	1	0	0	0	3	0	0	3	0	1
GAATTGGTAACATGCA	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
GGCTTCGTCTCCCGCT	alt_3659_missing	4	5	4	3	15	3	16	5	7	3
TAGCACTAGAAGGTAT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
CATGTCACCGGATCCC	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TCCGCGATATTCGCCC	alt_3659_missing	0	1	2	1	1	2	3	1	1	1
CGCGGCAGTTCGGCTT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
GTATTATTCTGATTGC	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TGAGCCGCGAGTTATC	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
AAGTCCTGTCACCTTT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
CAGGCATCTGTTATGT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TTTAAATCCCCTTCGG	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
ACAGATCATCGAACAT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TCGACATGCAAATGCT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
AATAAGCCTTTGGTCA	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
AGTCTAGGCCGGGTTT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
AGTAGTGTTAAACTGT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
AGTTTATTAGGTAAGT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TCTCAAGTATCAGGTT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
ACCTTAGCCTCCTAGC	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
GTTCCTGCTCACTGGA	alt_3659_missing	13	20	11	18	28	15	29	7	23	16
TTGAACTTCGCGAGAT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGTAGCTCCATG	alt_3659_missing	2	9	1	5	7	0	11	2	6	3
GTTGATCGGGTCGCGG	alt_3659_missing	10	15	6	6	12	8	13	6	26	8
ACGCCTATGTATTCAG	alt_3659_missing	17	29	23	19	40	22	51	15	57	14
TAGGGGTATTGGTCTC	alt_3659_missing	8	26	8	5	14	9	16	3	23	5
TAAGTCCATCCATGCG	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
AGTAAGCTATTTGTCG	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
GGATGGGATGTTGGTT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
CCTTGGAAGATCCTCA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TCGACCAGGTACACCT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
CGCCCTGTCGCTGTGG	alt_3659_missing	0	2	3	0	4	2	1	0	5	1
ATTACATCGTCATGTA	alt_3659_missing	12	31	14	11	36	9	29	9	52	16
GTCCTATGCCAATGGA	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
CCACCGGGGATATGGT	alt_3659_missing	2	3	1	1	5	3	3	2	5	1
AGTTTAGGCCCGGTAT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TCCGGCAGCGCTCTAA	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
GGGAGGACTAGATCCA	alt_3659_missing	4	14	9	4	15	7	11	4	17	1
TGCCTAGGAGAATGAT	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TGTGAGTGGCAAACCA	alt_3659_missing	6	21	11	6	21	11	23	2	24	8
TGCGTTTATATGGCCC	alt_3659_missing	8	30	9	8	15	3	9	12	16	10
GAATCCTCGTGTTTGC	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
CTTCTTAGACGTACTC	alt_3659_missing	0	0	0	0	0	0	0	0	0	0
TGATGAGGCAACTGGA	ref_3968_fdr	6	16	15	15	16	12	26	12	16	4
ATTTGATCGATTTTTT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTATGTTGGCCGC	ref_3968_fdr	28	21	33	27	34	24	42	29	40	31
ACCTTGGTCAAGTGAG	ref_3968_fdr	10	28	17	16	26	19	35	14	23	21
TTTATCGGCAAAGTCC	ref_3968_fdr	0	1	1	4	1	0	1	0	0	2
TTGGTCAGGTCAAACA	ref_3968_fdr	2	1	3	5	1	2	0	4	0	7
GTTACAGAGTAAACTT	ref_3968_fdr	6	26	11	18	27	13	24	10	21	12
GCCCACTTCGAGCACT	ref_3968_fdr	2	7	4	4	1	1	4	3	4	8
ACTCGGCGTACGTTGG	ref_3968_fdr	19	25	21	19	27	26	26	27	26	19
GACCCTTCAGGTCAAG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTAAGTGGCAAAC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TGACTTTCACGTTACA	ref_3968_fdr	5	9	8	8	9	4	9	3	8	8
TCACGGGATTTGCGTG	ref_3968_fdr	37	59	41	50	63	40	48	33	78	42
AATTCTCAATTAGAGG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AATGGTCGATTATTAT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AATTATTTTCAGTGCT	ref_3968_fdr	42	56	78	51	72	63	78	42	77	56
TCGTAGTCACCAAGAA	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AAACTTCGTGGCAAGC	ref_3968_fdr	3	5	4	7	5	7	4	6	7	3
TTCGATTAGGTCCACT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGCGCCCGATTTT	ref_3968_fdr	23	30	27	22	24	25	31	12	25	13
TACCATCGGTTTGAGT	ref_3968_fdr	67	86	90	83	98	59	124	78	123	56
TCGGTTGGACGTGCTT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
GGATTCAGCTATCAGC	ref_3968_fdr	23	65	47	58	77	50	49	41	76	31
CGCGACATCGGTTCTT	ref_3968_fdr	14	15	11	9	21	11	22	15	15	9
CGATAATGCCAGCATT	ref_3968_fdr	88	124	116	85	125	80	118	100	143	83
AGCCATATAGCCCCTC	ref_3968_fdr	3	2	5	4	7	4	3	2	5	3
CGCGCTGCCGTCGTAC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CATTAGATTTCGGGAC	ref_3968_fdr	4	5	10	2	7	5	7	5	5	1
CATTTTCCCTTGTATT	ref_3968_fdr	42	61	66	38	81	49	57	38	87	48
GGCGCTGCGTGAGTTT	ref_3968_fdr	9	12	4	3	8	2	15	7	10	8
TGATAACTCTGTTTTC	ref_3968_fdr	44	32	60	48	48	31	40	38	52	36
CCAGTCTCACAGGGAG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCGATCCAATGAACTG	ref_3968_fdr	9	13	18	8	12	11	14	8	23	10
TGGCCCCCTTAAGCTT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTGCATCTGCGCGGAC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTGTCTTGTTAT	ref_3968_fdr	7	7	8	5	14	4	7	3	11	6
ATCGAAATACCATAGG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTCGTCAGGTTA	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTAATCTTCGACACAC	ref_3968_fdr	26	21	26	27	28	24	22	30	32	25
GGCGTTCTTCCCCTTG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAGTGCTACTCGT	ref_3968_fdr	20	26	17	13	29	17	25	25	28	16
GTTAGTCTGGCTGTAG	ref_3968_fdr	78	126	107	94	162	73	184	74	145	74
TATGCTAATGTCTGTT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
GATCAACTTCGACGTG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
ATGTATAGGTTCGCCG	ref_3968_fdr	5	13	10	14	22	10	21	4	14	8
TGCACTCTTCGTATCA	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TAACGCCGCACCGCCA	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CGTACCATATTGTCCT	ref_3968_fdr	0	3	1	2	4	2	3	0	3	2
GTTAACGGCGGTACAC	ref_3968_fdr	9	11	10	6	7	10	8	7	9	8
GGGAGGTGATGTGTCT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTGTTTTCGTTGT	ref_3968_fdr	57	76	57	39	62	53	62	32	70	36
CAACTTTTATATGGCA	ref_3968_fdr	2	4	7	2	5	2	4	3	3	4
AGCGAGTTCGGTAAAA	ref_3968_fdr	32	70	50	41	66	44	67	35	66	40
CGAGTTATTGCCTATT	ref_3968_fdr	1	0	2	0	7	1	1	2	2	0
GAGTCAAGTCGATGGA	ref_3968_fdr	28	24	21	29	25	21	29	21	31	22
CTGTGCACGTGTACGT	ref_3968_fdr	8	12	14	8	18	11	16	6	15	10
CTTACGTATAACGTCC	ref_3968_fdr	49	60	59	51	73	38	80	36	74	33
TCTGTTCGGATGGTTC	ref_3968_fdr	12	16	11	14	15	8	19	16	9	5
ATGCAGATTGTCAGGG	ref_3968_fdr	38	39	36	32	43	34	52	40	46	31
GCGACTAGTCCGATTG	ref_3968_fdr	14	36	31	18	23	14	24	15	31	15
TAGCGTTGTTTTTCAG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTAACAAACCACC	ref_3968_fdr	3	4	1	4	4	6	5	2	7	6
GTATATCTAAAATGTG	ref_3968_fdr	3	6	3	4	4	2	10	1	10	4
CTTGGCGATGATCATC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
GACTTGCTATCAGTCG	ref_3968_fdr	3	6	3	4	8	5	4	3	12	3
TGCAACCGGCATACGC	ref_3968_fdr	7	17	6	7	10	8	23	8	21	12
CGCACTTCAGTTTGTG	ref_3968_fdr	14	17	13	9	39	10	28	14	37	14
AAGTTCCTTGCTGTTT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTACTATGGTTGC	ref_3968_fdr	33	61	46	46	68	36	51	32	71	33
GAACAATCTATTTTTA	ref_3968_fdr	25	23	22	15	33	14	21	13	36	17
ATAATTGGGTTCGGTG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCATCTGGGCGGT	ref_3968_fdr	6	12	17	12	22	11	6	6	14	6
CCGAATAGCACCTTCT	ref_3968_fdr	23	88	16	24	59	24	59	24	85	26
AGTCAACGCCGGTGCT	ref_3968_fdr	5	9	6	8	10	5	12	8	10	3
TCACTCACCTCTTTTG	ref_3968_fdr	18	59	16	9	56	12	73	19	72	14
ACCATCCGGCTCGTTA	ref_3968_fdr	8	15	4	9	15	12	14	11	16	10
GCTTCGTAATGTCTTA	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCTCAGTCGTCGCGCT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTAAAAGCGTCTGTTC	ref_3968_fdr	109	153	122	104	140	114	150	77	158	78
CCTACTCTCTTTCTTG	ref_3968_fdr	18	43	13	19	36	19	26	25	36	18
ATGCGTTCACAGTATA	ref_3968_fdr	83	149	105	79	139	84	156	81	143	70
CTGAGTCCACATGATG	ref_3968_fdr	60	100	53	79	108	66	90	55	101	65
ATCCTAAGGATACTCA	ref_3968_fdr	6	10	10	7	11	6	13	7	13	6
GAGAGTAACACTAAGC	ref_3968_fdr	12	8	18	7	18	9	16	8	25	11
CGCAATCAACGGCGAG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
GCATCTTCGACATAAG	ref_3968_fdr	21	23	28	15	30	24	27	38	21	21
CCTTTGACTGTCGATT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
ACGTCGTATTCCCGCC	ref_3968_fdr	19	48	21	27	39	20	38	21	36	26
AGTCTGGGCGAGTTGC	ref_3968_fdr	16	12	15	16	15	10	15	11	13	11
TCGGCGCGTAATTCTC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGATAGCGTGCCC	ref_3968_fdr	14	18	20	13	23	19	19	18	12	9
TTGCTCGTGGAGTTTG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGATGCTCCTCCC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGGGTTTCATAGG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CCCTGGATCAGGGGGG	ref_3968_fdr	18	34	33	23	38	14	32	23	41	19
CATGGCCCGATTTTTC	ref_3968_fdr	7	8	4	11	9	7	10	9	18	5
CTGACACCCGCAAACC	ref_3968_fdr	9	22	17	13	29	16	24	12	22	11
TCGGTTAAATCTGCGG	ref_3968_fdr	6	9	8	6	12	11	7	14	16	5
ATAGGCCTCTTACGGA	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
ACCTCGGAGTAGCTTG	ref_3968_fdr	17	50	25	27	24	26	41	17	40	20
CGTCTCCGCGATTCAA	ref_3968_fdr	10	13	14	12	21	5	24	17	19	13
AGTTTTATTCGCACCC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TGGATCGAAACTACGT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
ACATGGGTGTACTTCA	ref_3968_fdr	39	53	48	31	51	48	56	32	58	22
CCTTGTCGGGATCACA	ref_3968_fdr	2	5	6	4	7	4	16	4	6	3
TTACGGGGTGTCATCG	ref_3968_fdr	84	99	106	70	114	75	117	64	117	68
ATGGTTGTGCTAAATG	ref_3968_fdr	95	143	130	119	141	83	184	118	175	70
CGCTATGGCTCAATCT	ref_3968_fdr	22	33	36	30	43	25	35	28	41	26
GTCTTCAGAATTGCAT	ref_3968_fdr	136	152	135	117	196	120	171	118	179	91
AGTCCAATAAAAAGTC	ref_3968_fdr	80	114	98	75	108	83	119	81	122	68
ATGACGACCGGTGTGT	ref_3968_fdr	26	16	27	20	18	15	24	16	20	16
TGTCTCAGACGCCACT	ref_3968_fdr	37	75	53	41	55	34	59	38	79	31
ATAGACCCATGGGATG	ref_3968_fdr	19	41	33	41	44	18	45	22	43	32
TCCGTGGTTCTGGGCC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCCCCTTAATTGT	ref_3968_fdr	77	125	79	72	111	82	133	62	122	78
GTTGCGAGAGGACTCC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CCAGAATTCGCACCAG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CACGTTCCGCTACATG	ref_3968_fdr	20	50	40	31	51	23	56	24	33	33
CGTGACACTTACACAT	ref_3968_fdr	21	17	10	10	16	6	12	16	18	15
CGTAGCTGTTGTCCGC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AATTTGCAGTAAAACT	ref_3968_fdr	7	16	10	10	11	6	13	10	15	4
TTAATTGGGTTCGGTG	ref_3968_fdr	121	183	151	114	153	117	191	99	194	115
CTTGTGCAAGTCTTCT	ref_3968_fdr	11	17	7	7	12	9	9	5	17	7
CGGCATTTGTGCAGTT	ref_3968_fdr	2	6	6	4	8	2	8	4	8	8
GTACTGACGATCTAGT	ref_3968_fdr	52	78	64	60	66	52	80	49	76	40
CTACGCTCATATGTGA	ref_3968_fdr	3	18	10	6	11	5	16	9	18	9
TTACGCCCCAAAGTAG	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGCTACCTCCATT	ref_3968_fdr	19	30	28	26	26	18	30	12	35	11
TACGAAGTTCTAGTAT	ref_3968_fdr	12	20	12	10	22	19	26	5	11	8
TTACGCCCATGAAGCA	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
TTAAATCATCGTTTGC	ref_3968_fdr	6	10	7	7	9	5	2	6	3	2
TCTTTGATCGGGTTTT	ref_3968_fdr	13	24	27	18	37	18	30	7	26	16
TTTGATCGCTCTGCTC	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
CCAGCTTCGTGGTTGT	ref_3968_fdr	0	0	0	0	0	0	0	0	0	0
AGCTTTGTTCCCCCGG	ref_3968_fdr	39	51	47	32	53	50	53	35	50	33
ATTTCCCTTTGACAGG	ref_3968_fdr	46	81	58	39	76	54	57	37	75	39
GGGCCTGTGCAGCTGA	alt_5839_new	99	90	151	115	91	110	91	82	98	93
AATCACCGCTTCCACA	alt_5839_new	232	260	272	284	274	224	250	214	276	214
ACCGGGTCACGGGTTG	alt_5839_new	47	45	38	33	43	38	47	52	50	34
GACAAAACATAACTAG	alt_5839_new	23	40	40	30	35	30	65	21	45	20
AGCTCCAGGCAATCCG	alt_5839_new	19	7	20	16	14	15	16	16	20	8
TGAGACGGAGTACCGT	alt_5839_new	0	0	0	0	0	0	0	0	0	0
AACGCTGTTGCCTCGA	alt_5839_new	17	16	27	15	27	21	14	18	26	22
TCCGGACAATGAGCTT	alt_5839_new	2	2	3	3	4	4	8	1	9	4
TATCATAGAATACTTC	alt_5839_new	16	15	31	17	18	18	22	31	23	21
CAGTTCTTGTCATTCT	alt_5839_new	86	116	153	116	119	100	94	94	103	67
CATAATGTCCCTATAC	alt_5839_new	22	10	16	23	23	20	19	11	12	18
TTTGTTATTGACTGTT	alt_5839_new	35	21	38	38	29	42	33	32	44	21
ACAGAGTCAGATTGTC	alt_5839_new	130	124	170	158	145	140	130	134	130	128
AGGTTTATCTCCTTTA	alt_5839_new	23	24	23	22	21	18	24	14	23	13
CACCTTTTCTGTCGCA	alt_5839_new	15	24	22	20	16	23	20	18	20	17
GTGTCTCCCTGACGCA	alt_5839_new	48	32	60	55	36	41	40	44	53	41
TTGTTTATTCGTTAGG	alt_5839_new	0	0	0	0	0	0	0	0	0	0
CTTTGCTAACTAGGCC	alt_5839_new	0	0	0	0	0	0	0	0	0	0
GCGAGGATCCGATCTT	alt_5839_new	6	8	11	9	7	5	10	7	9	4
TTTTTAGGTCTGGTGT	alt_5839_new	82	97	109	94	55	93	96	66	104	65
TCCACACCTAGAGCGC	alt_5839_new	29	34	38	27	48	41	25	30	49	29
TCTCCTCTTGCCCCGT	alt_5839_new	0	0	0	0	0	0	0	0	0	0
CGGGCGTGGCCCCTTA	alt_5839_new	211	224	257	192	191	197	232	183	250	177
GTTGGCTTCCATGTTG	alt_5839_new	26	24	31	24	24	20	21	30	38	17
CTCACCCTTACATTTA	alt_5839_new	7	11	8	4	9	12	7	4	10	5
GTTGGGAACTTGAGGT	alt_5839_new	23	29	35	26	16	27	22	33	23	33
TAATTCGCAATAAAGG	alt_5839_new	87	59	113	85	93	93	82	64	81	72
GCAGCATCACTATGGG	alt_5839_new	10	6	8	8	12	4	10	11	10	5
AAAACGGCACACTCTA	alt_5839_new	79	94	103	89	100	84	93	81	116	87
TCCTGGACAGGCAACT	alt_5839_new	97	119	131	102	110	88	133	107	118	94
AGGTGTCGGCCATGGG	alt_5839_new	133	126	188	141	119	135	149	132	152	132
TATCAAATGCTACTTC	alt_5839_new	28	24	25	32	12	27	28	12	26	21
AGCCGCCCACATGCCT	alt_5839_new	4	0	1	2	1	2	1	2	0	0
TTTCATGCGGGTTGAG	alt_5839_new	36	34	74	57	36	32	45	41	50	37
AAAGGGTAGAGTTTGA	alt_5839_new	37	46	35	45	32	23	38	47	42	43
AATATGTGTGTTTTCG	alt_5839_new	83	74	80	80	68	87	78	54	82	68
ACCTGAGTCTGTCCCC	alt_5839_new	7	8	5	7	1	9	12	3	12	7
CCACAAGGTCGTTAAC	alt_5839_new	0	0	0	0	0	0	0	0	0	0
ACCCTACTTATAGACT	alt_5839_new	17	20	24	23	27	11	20	7	22	16
CAGAAGCTCGCTTTGC	alt_5839_new	14	16	22	21	22	18	27	17	23	15
GTCATGTATCCAACGG	alt_5839_new	50	63	47	41	56	44	49	44	56	46
TGTCGGGATCAACGAC	alt_5839_new	5	3	3	4	7	7	7	10	4	6
TGGGTGTTTCCTCTAG	alt_5839_new	0	0	0	0	0	0	0	0	0	0
GTTAGTGAGAAAAAAA	alt_5839_new	100	67	109	109	74	100	60	93	83	81
TCAGCTCGGGGTTTGC	alt_5839_new	0	0	0	0	0	0	0	0	0	0
TTGGGTTTAGACCCAG	alt_5839_new	13	10	15	10	9	14	4	13	12	3
CAGGTACCCGACGTTC	alt_5839_new	0	0	0	0	0	0	0	0	0	0
ATATATGGTAGCCGCT	alt_5839_new	59	95	101	65	109	56	104	71	86	60
TCATTGCCGAATGGTG	alt_5839_new	4	13	12	3	15	2	13	6	10	4
CATACACTGTACCCCA	alt_5839_new	20	20	27	27	36	13	19	12	29	14
ATAAGATTGAGCACGC	alt_5839_new	87	78	95	74	77	74	94	48	97	53
ACGGATGCGATATCAA	alt_5839_new	0	0	0	0	0	0	0	0	0	0
GGATCTCCAGCTTTGC	alt_5839_new	62	68	73	65	70	42	87	36	67	45
TGTAGTATATTGCGTG	alt_5839_new	41	42	38	26	44	37	36	31	38	34
AAGAAATCAGTGGTCG	alt_5839_new	40	43	55	50	36	44	37	38	49	41
CACATGTTTCCGCACA	alt_5839_new	30	27	25	28	23	25	37	25	24	27
CAATTATCGGGAAATC	alt_5839_new	102	143	134	139	99	106	127	132	135	120
GGGGTGCTGACTACGT	alt_5839_new	0	0	0	0	0	0	0	0	0	0
TCAATTGGCGTCTCAT	alt_5839_new	53	81	54	67	56	46	63	37	44	49
ACTTTCGTTGAGGTAA	alt_5839_new	0	0	0	0	0	0	0	0	0	0
TCACCCAAAACGATTG	alt_5839_new	0	0	0	0	0	0	0	0	0	0
CTGAGTAGTTGGTACC	alt_5839_new	0	0	0	0	0	0	0	0	0	0
CCCAGTGTTTCCCATT	alt_5839_new	12	8	18	18	11	12	10	13	9	12
CTTCCTACCCCGCTTC	alt_5839_new	0	0	0	0	0	0	0	0	0	0
CTAGACATCATTTACA	alt_5839_new	22	36	20	23	37	19	23	24	27	22
TTGACTTTGGCTATTT	alt_5839_new	17	26	25	24	11	24	17	17	25	23
GAGATCACCCCGGGTA	alt_5839_new	57	62	77	75	56	56	57	57	51	56
ATACTCGATTATCTAT	alt_5839_new	0	3	0	0	0	0	0	0	1	1
GCGCATCAATTTGATA	alt_5839_new	206	249	267	268	269	264	294	230	255	198
TTAGGTGTATACAGGG	alt_5839_new	22	22	29	27	27	19	25	31	14	23
CATGCATTCACCTTCC	alt_5839_new	85	69	96	67	63	60	71	71	59	58
TTTCGATCGCCATCCT	alt_5839_new	71	73	100	78	62	59	68	81	86	80
CTATGCTATGAAGTCT	alt_5839_new	87	90	118	84	97	61	82	85	105	79
GAGGTTTTTGGTTTCA	alt_5839_new	0	0	0	0	0	0	0	0	0	0
CGGCAACCCGGAGGAT	alt_5839_new	0	0	0	0	0	0	0	0	0	0
AAGGTATTGTGGTCTT	alt_5839_new	44	49	68	48	38	40	57	38	63	39
CACCCATAGTGCTCTT	alt_5839_new	14	16	13	14	18	10	11	9	10	12
TATGTGCACCATGAGG	alt_5839_new	88	85	69	90	94	69	92	64	108	76
TTTTTTCTTGAAATGC	alt_5839_new	46	39	69	56	51	36	46	34	55	34
GGGGGCCTGTTTTATG	alt_5839_new	78	70	90	86	61	82	80	82	70	70
TCCCGCGTTTCAAGTT	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
TAGCGTTTCACAATAT	alt_959_fdr	20	17	24	20	20	22	19	19	22	19
TTTTACGTCGGCTCTT	alt_959_fdr	230	116	229	238	144	183	167	223	146	160
TAATTGCCAATTAGTC	alt_959_fdr	69	35	69	59	27	54	48	46	36	41
GGGTGCCTGGTGGCTT	alt_959_fdr	45	37	59	61	29	44	33	53	36	54
AAAACCGATGGCCAAA	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
AGTTATCACACAGTAC	alt_959_fdr	7	8	10	11	6	3	3	8	4	7
TCCTCGATGCGTGACG	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
TATCAAATTATCAGCG	alt_959_fdr	125	61	119	110	78	107	95	89	92	102
TGTCTGGAGTATTTTT	alt_959_fdr	19	18	27	16	22	21	19	24	21	11
TTTACGTTGTATGCAA	alt_959_fdr	21	23	38	34	28	37	27	22	26	24
GCACGGTCCGCCAATT	alt_959_fdr	27	24	38	25	15	38	22	31	37	18
TCTCGTCGGGTCATAT	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTGATTGGGTCA	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
GAGATTGGTACGGACT	alt_959_fdr	93	58	119	75	63	82	73	68	66	75
ATTACCTAGTCTTTTG	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
CTTGACCAAGTCCGTG	alt_959_fdr	50	31	70	53	27	47	43	59	34	40
AGGTAGTTCACTCTCT	alt_959_fdr	111	62	102	92	75	71	86	98	86	68
TTCTCGTTCCCCACAT	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
TCAGACTTCTTGGTTG	alt_959_fdr	83	83	90	98	103	65	104	83	102	64
TTTATTGATGAGGCTG	alt_959_fdr	26	11	26	15	17	27	12	24	13	15
ATCTGGTTAAAGTATC	alt_959_fdr	32	22	36	25	25	22	22	26	13	31
GCGGTATGTCTCAAAA	alt_959_fdr	25	22	23	28	15	30	20	27	18	29
ACTTGGCGCGGCCTCG	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGACAATCAGGTG	alt_959_fdr	129	77	185	159	92	144	85	140	104	131
TTTGTGTTCTAGTAGC	alt_959_fdr	87	58	117	106	77	84	95	107	83	77
GCGCGAGCCACGGGGC	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
ATATAAATATCCTGTC	alt_959_fdr	37	27	49	37	43	37	23	37	17	33
CCGATTGCATACCGTA	alt_959_fdr	25	17	18	13	23	20	23	9	18	14
GTTCGCAGCTTTCATT	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
AACTGCCTTTGAATGT	alt_959_fdr	32	40	60	42	56	29	51	44	49	36
TCACGCTCCTCCGACT	alt_959_fdr	34	65	41	38	49	36	57	42	35	40
TTAGGTTCCCCCTCGA	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
GCGATTCCGCGTAAAC	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCTATTGTTGAAC	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
CCTGCCACTTTATTCT	alt_959_fdr	47	105	41	36	125	46	109	34	113	29
GTACTGAAGCCTCTGC	alt_959_fdr	294	193	338	322	203	245	215	278	227	238
TCTCTGGTGGCGTCGG	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
AATACTATTTGATGCT	alt_959_fdr	80	51	78	67	53	60	60	71	64	66
CATACGTGGCGTAGTG	alt_959_fdr	79	35	85	90	48	79	37	78	53	66
ACCCGGAGTATGCAAC	alt_959_fdr	12	5	11	10	13	7	9	7	2	4
GGTCGTATTGTGCCAC	alt_959_fdr	1	8	12	11	3	8	7	13	7	5
GGTTATCTCTGTTACA	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
GAATAGACACCATAAG	alt_959_fdr	260	205	335	301	183	246	209	236	219	274
GTAGCAAGATCTTGTC	alt_959_fdr	59	35	85	75	53	66	47	76	50	47
TGTGACATGCTTCAAT	alt_959_fdr	44	39	44	45	38	44	50	38	38	31
AATAACTTTGCGTGCT	alt_959_fdr	17	19	40	19	18	27	12	19	17	7
CCTATTTCCAGTTGTC	alt_959_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGCGCGCTTCACG	ref_4446_reverse	29	20	25	20	35	17	24	25	30	17
GGGCTTACACGGTTGG	ref_4446_reverse	46	35	41	32	46	38	47	35	43	32
GCCGTCTTGCTAGGTT	ref_4446_reverse	46	69	41	46	56	43	64	54	59	57
TTGCGAAAGCTAACTT	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
CATGTGGCCCTTTTAG	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCCTCGGTGTCCT	ref_4446_reverse	1	5	1	4	2	6	5	3	2	5
TTTAGAATACTTACGC	ref_4446_reverse	13	60	21	14	68	21	66	12	64	11
TAAATCTTGGGCCTGG	ref_4446_reverse	32	42	32	27	49	25	35	38	30	21
GTGTGGAAACCTGTAC	ref_4446_reverse	26	42	31	26	41	35	34	31	31	27
GTTTCAACGGTAAACC	ref_4446_reverse	34	33	33	26	44	25	49	22	46	26
GGTAGCAGGGGATTCT	ref_4446_reverse	47	43	39	40	39	47	49	30	51	37
CGAGCTTCTGGCTTTG	ref_4446_reverse	47	55	54	66	47	42	61	42	54	39
TTCCTGCACGGTCACT	ref_4446_reverse	20	27	16	28	27	24	25	21	31	29
GTGTGGGCGGGTGTGT	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TGAGAGGCGCACAGGT	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGCGTAACCTTTG	ref_4446_reverse	24	41	43	19	32	26	35	34	31	30
CGCTGTCATGTCAAGG	ref_4446_reverse	0	0	0	0	0	0	0	0	1	0
CCCTGCCACTACTGAA	ref_4446_reverse	8	12	8	11	12	4	10	16	10	7
TAAGAACAGTTGACAC	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGCTGTTTAGCTC	ref_4446_reverse	84	117	89	73	110	92	104	68	124	75
CATCACGGGAGGTATA	ref_4446_reverse	9	18	17	11	17	6	6	7	9	7
TTCAAGATTGAATTTG	ref_4446_reverse	15	19	15	17	20	22	27	12	25	15
TCGTCTAGTTTGTTTA	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGTTTTGGTCATA	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
CGGCTCTTGATCTACC	ref_4446_reverse	30	46	47	40	35	25	43	28	45	35
ACCCATTGCTTAACAT	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
GACCCTAGCTGCACGG	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TTCGGAAGCGGGGGTA	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAAGATCGGACGA	ref_4446_reverse	3	9	14	8	18	6	18	6	14	11
CGGCTTCTGTTAAGTG	ref_4446_reverse	5	6	9	13	14	7	7	7	12	9
ACTCGTTGAAGCATTG	ref_4446_reverse	48	65	68	53	76	55	92	45	77	68
GCTTTCCCAGCCCCAC	ref_4446_reverse	25	18	25	14	25	13	32	28	22	19
CGCGCTGTTAGTCCTG	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAATGGCGGCGGC	ref_4446_reverse	16	6	10	15	15	11	13	11	14	12
TGGCTCGGATTCGGTT	ref_4446_reverse	14	27	10	13	23	14	26	12	19	10
TTTCGGCCTTTTAGGG	ref_4446_reverse	24	39	22	12	26	17	30	18	17	21
ACATGCCGGCTCGGAG	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
CAAGCATGGAATGTAA	ref_4446_reverse	62	70	77	67	87	64	56	55	93	42
CGATCATGCCTGATAT	ref_4446_reverse	18	15	19	24	19	22	12	15	21	15
TCTTTCTTTCTAGGGG	ref_4446_reverse	66	87	70	67	84	71	90	63	79	55
TGATTGTCGATGCGTA	ref_4446_reverse	15	18	7	16	18	10	19	8	20	10
GCCAGGGTGCCGTGTT	ref_4446_reverse	82	97	111	91	133	62	127	80	136	83
TTTATCCCGGGGGCAG	ref_4446_reverse	13	25	18	20	13	9	27	12	19	15
AGCCTGTCGCCAGCAA	ref_4446_reverse	8	11	15	9	21	8	14	17	14	11
AGCCATTCTGGTTCTT	ref_4446_reverse	5	5	4	1	2	1	5	3	1	1
AGGCCTCTAGCATGGC	ref_4446_reverse	37	16	46	32	32	35	22	37	28	25
CTTCGTACAACGGAGA	ref_4446_reverse	10	6	16	11	11	4	12	8	11	13
ATGCTATGTTTAGGGG	ref_4446_reverse	44	60	74	62	63	51	81	65	75	61
AGGAAGATTTTATCTG	ref_4446_reverse	8	14	14	9	7	14	19	19	16	7
GTTTTGATTAGATCAC	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TTATGTATTCAAAATC	ref_4446_reverse	9	15	21	13	10	18	23	12	9	11
AACTCACTCTATAGGT	ref_4446_reverse	17	22	14	13	22	19	20	12	23	14
TCCGTCCACAAGACGT	ref_4446_reverse	113	173	148	133	170	126	206	128	196	104
TTGCTGAATTTCGTTT	ref_4446_reverse	13	14	15	15	15	15	9	13	34	16
TTCCTCTCGAGCTGAG	ref_4446_reverse	17	22	33	22	36	24	39	15	25	16
TTACCTTTACTCTCCT	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TGCATTGTTCGGTATA	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
CCGTTACCAGCGTTCA	ref_4446_reverse	48	73	56	51	78	48	66	44	72	62
ACTGTTCTTTACGAAA	ref_4446_reverse	7	13	12	10	19	10	22	11	31	7
AGCATTGATACTTTGG	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCAAACTACGTTT	ref_4446_reverse	4	12	2	4	9	3	10	4	6	7
GCTGTCCCCAGGGACG	ref_4446_reverse	32	31	42	38	54	40	53	22	45	30
GCGTTAACGAAACGGT	ref_4446_reverse	47	61	50	36	54	42	73	43	76	23
TATTCCAGTTCTCCTC	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TTATATGGAACTTGGC	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTATTCCATCGTG	ref_4446_reverse	33	49	40	46	53	45	55	37	62	38
CCCTTGGTTACTAATC	ref_4446_reverse	1	9	5	2	7	3	7	3	7	4
GCTTCCCCTCGATCCC	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTGGAAACTTCAT	ref_4446_reverse	0	0	0	0	0	0	0	0	0	0
TGTTCCCCGATGAGGC	ref_6010_new	63	51	86	75	52	81	50	65	60	54
TAGTCCCAGCCTTTAA	ref_6010_new	13	13	19	13	13	21	9	16	11	13
ACCCCGGGCGGTAAAT	ref_6010_new	45	25	45	46	23	21	25	40	29	27
GATGCCAATCAGAACC	ref_6010_new	32	24	53	46	37	24	23	29	21	28
CCCCTGTGAACTATGC	ref_6010_new	45	30	63	63	37	41	38	33	28	44
ACACCCGACAGTTCTC	ref_6010_new	74	87	100	75	95	64	119	72	98	60
AACGCTCAGATTTCAG	ref_6010_new	55	30	63	54	34	48	39	58	32	34
TATAGGCATTTTGTTT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GGCCCTGGCACGGACC	ref_6010_new	19	6	25	17	7	15	12	17	16	25
AAAGCTGTCCAGCCAT	ref_6010_new	162	94	184	176	104	159	89	150	104	161
CCGTATTAGGGCATAT	ref_6010_new	15	5	8	9	5	14	14	9	9	18
TAGTATTTTGGGATCT	ref_6010_new	285	169	316	258	130	230	168	166	177	227
AGAAACAGGCAAATCT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
CGTAGGCCCAGGACCA	ref_6010_new	52	28	52	63	35	41	29	44	25	49
GGCATAGCCGAACCCA	ref_6010_new	121	85	165	138	88	116	90	106	103	116
AGTACTAAGTTTTGAT	ref_6010_new	121	95	161	125	86	105	98	74	120	117
CCTGGGAGCCCTACCT	ref_6010_new	21	19	26	25	12	19	22	18	10	12
GCCTATATGCGTGATC	ref_6010_new	44	23	55	45	36	43	23	45	23	39
GTTCTCGCTTGTAAGT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
CTCGGACAACTCCGGC	ref_6010_new	192	99	234	159	119	154	126	159	122	161
ACACCACACGTCGGCG	ref_6010_new	10	5	14	9	9	8	6	11	12	7
CTATTGCGAAACCACG	ref_6010_new	13	11	16	18	12	22	12	21	16	13
CATCGAATAGATATCT	ref_6010_new	53	36	48	29	19	43	37	49	35	21
AGATTTACGTTAAGAC	ref_6010_new	0	0	0	0	0	0	0	0	0	0
CGAGCTTCATTAGTCA	ref_6010_new	86	48	109	92	62	88	61	116	60	83
ACCCCTTCTGTCCGAC	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GCCAGTTCCTCACCAG	ref_6010_new	11	9	11	7	18	9	8	20	9	5
ATGGCTACCCGACTGG	ref_6010_new	44	37	67	53	36	46	35	40	54	48
AAATGATTCTCGGGGC	ref_6010_new	39	15	39	30	11	27	10	27	13	32
GCGACGTGAATAACAT	ref_6010_new	44	20	46	47	23	45	40	37	30	42
TTTACGTCACCTTTGT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
AATGCGACATTGTCGA	ref_6010_new	54	42	71	53	35	59	32	42	39	26
AGAGTTTTATTTTGCC	ref_6010_new	47	28	44	37	33	39	31	37	40	45
TACTTATAAGTGGTGA	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GGCAGAGAGAGTTGGC	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GAGCTGCGGGGAGGGT	ref_6010_new	87	73	126	118	74	130	87	119	79	97
AGCCAATACATTTCAA	ref_6010_new	42	30	38	27	27	20	28	27	27	27
GGTCTTTGAATTGTCA	ref_6010_new	35	30	49	37	33	41	33	40	29	47
GTGGAAGAAGAGGCTG	ref_6010_new	8	11	12	10	10	9	4	6	13	6
AAGTAAGTTGCAGTTT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
TCCTACGCGATCATCG	ref_6010_new	23	12	20	20	23	24	12	21	13	23
GGGCAAAGGTTCTTTA	ref_6010_new	10	11	14	20	7	18	14	20	11	11
GTTTACAGAGTCGGCG	ref_6010_new	18	5	22	8	9	13	11	18	12	12
CGATATGGGGCTTTCA	ref_6010_new	14	3	5	6	3	6	3	8	5	6
GACTTTCCCAGCTCGC	ref_6010_new	124	111	145	121	79	133	100	114	102	101
GATCCGTGGCTTCACC	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GATATCGCCTCCGCCT	ref_6010_new	0	0	0	0	0	0	0	2	0	1
AAGCGGCGGTACTTAA	ref_6010_new	0	0	0	0	0	0	0	0	0	0
TTATCTTTTTATACCG	ref_6010_new	23	21	39	32	19	41	33	27	25	15
GCTGCTAGCTGTGAGA	ref_6010_new	0	0	0	0	0	0	0	0	0	0
ATGGCGCCGCAATACT	ref_6010_new	68	48	58	72	38	57	25	55	51	41
GAAATTAACATTGTCG	ref_6010_new	7	9	17	16	6	8	13	15	13	13
CGTATCCATCGCATCT	ref_6010_new	74	81	106	99	80	84	62	85	102	79
GTAACTGTCCAGAGGT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
CGGGACCTCACGCATG	ref_6010_new	122	55	128	116	55	102	59	108	46	106
TTCGCGAAATTTACTA	ref_6010_new	238	142	251	240	155	229	161	229	174	203
CGTCGCCAGACACGAT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GCAGACGCAGTAACCT	ref_6010_new	21	21	28	23	18	24	16	24	9	18
CCTTCTATTAAGTCTT	ref_6010_new	149	119	209	168	110	165	129	159	117	143
TTAACTACGTAACCAG	ref_6010_new	94	56	114	100	62	67	49	57	58	79
GTAATTACCTGCGTTT	ref_6010_new	11	5	12	11	10	10	11	6	11	8
ACGAGCTTGACCTTCG	ref_6010_new	0	0	0	0	0	0	0	0	0	0
CTTCTGGTCCTATATC	ref_6010_new	346	198	435	382	218	375	246	323	243	279
TTTTGAAAACCTGAAA	ref_6010_new	45	26	52	55	27	50	17	50	36	48
CATGTCCTATCCTCCA	ref_6010_new	36	20	35	23	28	29	30	51	26	36
TCCCTGATGCCGGTTT	ref_6010_new	100	70	107	105	56	113	71	76	64	87
ACTGCCGGGACAAAAC	ref_6010_new	20	10	10	13	6	10	8	8	5	12
TGAGAGCCTGCCCCGG	ref_6010_new	48	35	51	45	23	57	35	48	44	26
GTTTAATTTTACTGGG	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GAATTTGGTTTCGCCT	ref_6010_new	0	0	0	0	0	0	0	0	0	0
GAGGGGACAACTTGCA	ref_6010_new	17	12	18	19	7	21	11	16	16	11
GTGGTACTGACCAAAG	ref_6010_new	0	1	4	0	1	1	1	1	2	0
CTGATTTAGGTGACTG	ref_6010_new	94	71	137	108	84	80	78	107	101	111
TCTTTGGTATGTCTTT	ref_5678_new	48	17	63	51	13	37	24	33	24	39
TGTTCGGGGTTGGGTT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
CAACTGGAGAGTTGTT	ref_5678_new	455	230	510	446	260	449	239	429	230	395
TGAGGGTCCTCTAACA	ref_5678_new	31	27	56	48	29	55	36	47	24	43
TAGATGCCCTGAGGCG	ref_5678_new	29	20	35	35	13	33	11	16	10	25
CCGGTCGGTAGCCGCT	ref_5678_new	26	59	30	18	60	16	61	17	61	15
CATGCAAGTAACCACT	ref_5678_new	23	9	29	28	10	29	12	23	13	27
AGGGCCGAAAAGCCGT	ref_5678_new	53	21	52	39	30	46	20	48	21	43
CCGCGCTTCTGTGCTA	ref_5678_new	316	154	377	310	160	330	167	295	168	319
ACCACCGGATTTATGA	ref_5678_new	155	123	206	197	130	143	142	163	137	159
AGTGTCTGTTTTTACT	ref_5678_new	41	28	60	35	29	35	28	44	34	35
TGCTCATAAAACCCGA	ref_5678_new	0	0	0	0	0	0	0	0	0	0
CGCACGGTAATTTGTC	ref_5678_new	8	21	14	19	34	11	46	17	37	6
AATTCGCTTCACCGGC	ref_5678_new	280	128	364	326	146	296	142	307	113	285
TTCGGCTTCACACAGT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
CATAATCGTTCAAATA	ref_5678_new	0	0	0	0	0	0	0	0	0	0
AGTTTGCCACGTACAG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TGTAAAATAGCTTCAG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TACGGCCCATTCCTTA	ref_5678_new	133	74	121	134	75	124	62	113	84	101
GGTGAATAGACAACGA	ref_5678_new	13	8	17	13	11	8	5	19	12	14
CATATTAAGTCGGCCT	ref_5678_new	604	250	677	575	267	541	314	547	301	480
GCGTTTGATCCGTGCG	ref_5678_new	10	3	6	3	2	2	1	2	5	8
GGATCGTACTCTGTTC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ATTTTCTACTCAAGAC	ref_5678_new	26	27	37	28	16	21	21	32	26	18
GATAGTGTGTTCTGCT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TCAGTGCACGGAGGAC	ref_5678_new	16	14	22	23	14	23	9	26	17	20
TATTTTGAATAATCCC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTTCTTATGTA	ref_5678_new	92	57	102	93	42	83	55	94	54	78
GAGCGATACTAACTCA	ref_5678_new	0	0	0	0	0	0	0	0	0	0
AACATTTACTTTGGCA	ref_5678_new	0	0	0	0	0	0	0	0	0	0
GTCCGTTAACGGTATA	ref_5678_new	24	20	41	41	12	40	30	38	27	41
ACTGTGATGCGACAGC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TCTGATCTCGGCGGGC	ref_5678_new	256	129	333	240	123	260	128	230	134	238
TCTGATCTCTTCCGTT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ACTCCGTATATTTACC	ref_5678_new	220	93	277	218	82	188	102	191	104	175
CCGATTAATGTAGGCT	ref_5678_new	916	485	1091	975	430	880	513	832	512	772
CGTTAGGCCATTTAGT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TTATGGGCGGTGCCTG	ref_5678_new	26	16	47	33	19	36	16	29	20	37
CTACACATATATTTCT	ref_5678_new	180	90	230	180	89	172	112	196	125	157
AACTTGAATGTTTCTT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ACCATTTAGGTAAACC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
CTCGATGCTTAGTGAT	ref_5678_new	88	47	96	85	56	62	65	87	53	68
TCGAGACCTGGGTGCT	ref_5678_new	61	32	66	58	39	43	43	40	33	52
TTTTTACACTGGCCTC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ACGCGAGTATCGTAAA	ref_5678_new	53	23	62	62	36	59	20	48	32	49
GCCCAAGCTAAGAAAT	ref_5678_new	192	99	245	202	100	192	90	197	114	183
ATAAGAACCCTGTTGT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ACTCGCAGATTGGGGG	ref_5678_new	109	66	140	140	50	80	69	110	61	96
GTTCCTTTTTAAAGGC	ref_5678_new	25	13	21	28	8	18	9	9	10	15
TGGTTGTCGGTTTATC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
GTATTGCTTCTGGAAA	ref_5678_new	103	55	112	82	63	87	51	93	74	80
TGTGTATTTTCCCAAC	ref_5678_new	20	7	5	19	7	9	4	8	13	17
CCCAACGGGCTATAAC	ref_5678_new	80	36	98	96	42	79	41	71	53	76
GGCGGGTCATAGCCTG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ACGCCAGCCCGGCAGC	ref_5678_new	32	29	72	57	21	34	16	29	33	38
TATAGGTGGGCATTGT	ref_5678_new	89	42	100	80	38	91	42	91	56	50
CTTATTCTCGCTGCGT	ref_5678_new	69	30	85	59	43	78	42	53	42	69
CGCATCTCAAAACTCA	ref_5678_new	0	0	0	0	0	0	0	0	0	0
GTCCCTTAGCACTTAT	ref_5678_new	129	70	138	120	68	104	55	113	79	112
TATTGTGTGCGTTAGT	ref_5678_new	59	35	84	58	28	44	37	62	35	35
GGGCCTGGAGTTCAAA	ref_5678_new	43	11	44	15	20	28	12	29	18	24
ACTTCGGGTCAGCACC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TTATTTGATAACGTAC	ref_5678_new	74	34	82	83	35	74	42	63	44	69
TATGCGTATTTCGGTT	ref_5678_new	229	150	296	269	131	254	133	255	140	222
GCTGGCCTCACGCCTT	ref_5678_new	109	32	97	80	44	90	48	81	67	83
TGACGTTTACCTTGCT	ref_5678_new	60	23	61	57	34	59	23	51	28	38
CAGCGCTGGGGCAGCT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
GACGCATGCAACCGTT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
GAGCATTGTGTGGCCT	ref_5678_new	24	14	21	16	10	17	10	21	6	13
TTAAATTTTACCCCAT	ref_5678_new	63	25	75	62	53	57	23	69	29	61
CTCTAGACTTCGGATG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
CCTACTTTGGGGTGTC	ref_5678_new	21	16	46	36	10	32	24	35	17	17
CGTAATCGTTCAAATA	ref_5678_new	666	331	863	703	343	581	358	616	345	601
AAAGATATCGATTCTA	ref_5678_new	249	110	269	229	96	199	96	196	97	209
AAGGCTTCTGCCGTCC	ref_5678_new	2	4	6	2	6	5	0	8	1	6
ACAAAACGCAGTCCGG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TTATATAGCTATATCG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TTAAGTCTGGTCTCGT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
AGCTATCACACCGCGA	ref_5678_new	1	4	5	5	4	8	3	4	9	7
TAGAACCCGCTCTCGT	ref_5678_new	28	20	50	43	27	46	25	34	18	25
AGCCCGTGTTATCCTA	ref_5678_new	74	58	105	106	70	83	51	85	74	87
TTTTAGGCGTGGCTTG	ref_5678_new	0	0	0	0	0	0	0	0	0	0
TAATACCCGTATGGTC	ref_5678_new	48	23	63	57	16	56	23	43	20	48
GATCCTGTACGGGCCT	ref_5678_new	0	0	0	1	0	0	0	2	1	3
GGGTCAGAACCCACAG	ref_5678_new	100	42	135	108	56	103	59	107	53	87
TCACACTGTAGCCTTG	ref_5678_new	17	10	17	17	6	17	9	10	4	12
AGGATAATAGTGTGGA	ref_5678_new	304	149	320	283	158	262	121	238	146	219
TACTCGATTGATCGCA	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ATTTACTAACATGCGC	ref_5678_new	0	0	0	0	0	0	0	0	0	0
AAAATCCGCTATACAT	ref_5678_new	14	5	11	7	11	8	3	16	13	8
TCCTCGAGCTTTACGT	ref_5678_new	0	0	0	0	0	0	0	0	0	0
ATAACGTTAACTGTCT	ref_5678_new	9	5	6	5	2	5	6	10	2	2
TAAGACCTCGGATTGA	ref_5678_new	57	33	51	54	26	44	31	50	25	36
CCAACGTTAAAATCGA	ref_5678_new	22	15	43	29	13	35	14	27	20	33
CTTGTGTGATGCCGAA	ref_5492_RC	16	18	19	10	17	10	19	15	17	10
ATGATAGCCACAGCGT	ref_5492_RC	56	54	56	65	62	45	65	43	62	51
CTTGATGGACTTACGT	ref_5492_RC	81	128	91	91	139	59	105	87	155	52
GTATTCCTGACCGTTC	ref_5492_RC	81	74	96	77	73	64	72	61	83	61
CTTGCTTTTTTCATAT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
GCTGCTGGTATGAACA	ref_5492_RC	134	153	174	139	168	125	145	120	160	120
TCTCCGGCTCTTCTGG	ref_5492_RC	52	78	58	54	57	50	71	55	88	47
AGGTTTCTATCTGCAT	ref_5492_RC	17	12	11	11	17	10	11	16	13	11
TCTCATGAATACTCTC	ref_5492_RC	126	109	139	117	104	127	129	99	128	121
AGGCCGACGCTATGAT	ref_5492_RC	10	17	15	15	17	8	13	11	14	9
CGATTTGCATGTTCGC	ref_5492_RC	10	6	9	13	8	10	7	9	7	9
GACGGCCTATTCCGCT	ref_5492_RC	4	9	4	4	5	7	7	4	10	2
GCACCCCCTGGATGTG	ref_5492_RC	2	5	3	0	4	1	4	0	7	3
CTTAAGCCTTAAGCTG	ref_5492_RC	15	17	17	15	21	16	10	9	18	2
ACAAATACATAGTTTT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
CCTAGATTCCAGGGCT	ref_5492_RC	16	15	7	12	18	18	15	18	14	9
TTAGTCCACCGAAAGG	ref_5492_RC	42	57	50	36	49	34	38	34	44	42
CTAACTTAGAAATTAT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TCCTTAACAGTGTTAG	ref_5492_RC	70	93	88	60	92	60	114	45	94	62
TAGAGGCCTAGGACTT	ref_5492_RC	14	20	22	15	31	17	19	20	22	18
ATGCCCATTAATAGCT	ref_5492_RC	11	17	16	17	23	11	15	18	23	19
ACTGCCGTCTAGAACA	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TTACGGTAAAAATACG	ref_5492_RC	7	9	14	10	13	7	5	7	5	3
CAATATCTAACATTTA	ref_5492_RC	26	38	40	36	29	31	37	34	28	32
TTATTTTTGTCGTATA	ref_5492_RC	28	36	51	27	37	32	39	37	32	30
CCCGGCGTAAACGAGA	ref_5492_RC	92	68	98	82	65	44	94	77	91	72
GTCCACTCTGGTTATA	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TCTGATCGTGAAGGGG	ref_5492_RC	52	54	57	51	66	38	71	45	61	41
TCGCGCTTCCGTGATC	ref_5492_RC	39	30	59	46	45	33	36	38	52	47
AGGCCCTGGTCAAAGT	ref_5492_RC	34	38	54	29	37	36	36	38	48	41
ATGTTTACATGATGGT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
GCTAGACTACGACACC	ref_5492_RC	7	9	7	3	9	4	7	8	5	7
TTATCAATTCCAGTTT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TCTCACAATGCGCGAC	ref_5492_RC	107	115	115	100	106	100	131	81	124	85
ACAGAATTGGGATTAT	ref_5492_RC	30	33	41	35	34	28	40	31	38	33
CTTACGGCCTACGTAG	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
GCGCGTTGGGCTAGTG	ref_5492_RC	83	84	73	63	88	52	89	56	99	68
TGCGCAGTGATGAAGC	ref_5492_RC	18	25	18	18	19	13	22	16	18	20
CGACGTTAATTAACAG	ref_5492_RC	19	29	28	21	32	30	26	19	25	27
TCTCCGTGTTCCAGGC	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TTGCCCTTATTAGAGG	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
AGCAACATCGGTTTTT	ref_5492_RC	0	3	0	3	0	0	0	1	1	0
ATTCTAAGGTAAAGAA	ref_5492_RC	50	42	64	56	48	38	53	60	56	41
ATAGGGATTTACTTAA	ref_5492_RC	29	18	33	17	24	25	24	25	34	24
TCATGGGTCTATTCGG	ref_5492_RC	46	53	72	57	71	37	51	54	70	43
GCACAGGCGGCCATAA	ref_5492_RC	36	30	36	37	25	28	44	33	52	23
TTCTATCTATCGCTGG	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TTAGTGTCAATTTTCG	ref_5492_RC	52	85	57	68	89	55	100	58	103	61
GCTTAGCGTCCAGGGT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
AGTCGCGTAGTCCTTG	ref_5492_RC	9	10	6	7	5	8	3	9	4	11
GGCCCTTTTTCTTTGG	ref_5492_RC	36	22	29	32	32	23	26	28	27	33
TTCGCGCATTTTCGTG	ref_5492_RC	85	81	78	77	74	75	117	80	115	70
GATATCATCCCGCACG	ref_5492_RC	44	59	56	48	65	51	63	38	69	45
TTCTGCCGCAAAGCTG	ref_5492_RC	24	37	29	24	40	25	44	26	32	20
GGCCCACCTTTTACCG	ref_5492_RC	38	52	51	43	49	33	45	46	49	36
TCAATAGATTCGGTAC	ref_5492_RC	35	32	36	42	36	42	54	33	53	39
ACCACCGAGTACCCTT	ref_5492_RC	43	54	58	65	49	41	68	41	64	52
CAGATTTGCATTTAGA	ref_5492_RC	129	144	163	139	138	128	153	130	145	122
CATGTAAGCAGGCTGT	ref_5492_RC	11	4	8	11	15	15	9	7	4	11
CCCTTGTTAACGTTTC	ref_5492_RC	47	51	79	52	35	31	44	49	32	31
AGAGTGTTGGAGGATT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TGCTCCCGTTGTGACT	ref_5492_RC	35	50	37	31	58	41	42	25	61	38
ATCGGTCTTAATTCGA	ref_5492_RC	30	20	31	22	40	27	39	25	36	19
TCTCGTCGCTCACGGT	ref_5492_RC	85	84	114	110	96	86	113	90	93	72
TACTTGGGCATAGTAT	ref_5492_RC	20	25	24	18	18	23	21	18	22	24
TTCCTGCGCTTCCTGG	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
CGGTCCGGTCGCATAT	ref_5492_RC	0	2	7	2	4	1	5	3	3	1
GGAGTCAAAACTGGTA	ref_5492_RC	80	68	74	66	70	75	88	68	93	63
CTGTTCTCAACGCTGC	ref_5492_RC	18	14	19	14	18	11	13	7	26	7
CGTACTAATAAGCTGC	ref_5492_RC	49	67	74	50	68	62	63	59	71	72
AGCTTAATTCAACCGC	ref_5492_RC	19	27	23	28	44	23	31	19	20	18
GGGCGAAGTACGTTAA	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
CATCTGGTCATTGTGT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
ACCAATTTAGGTGAGC	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
ACTTGCAAGTATAACT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
GTCTTAGATCTTCGCA	ref_5492_RC	14	25	20	10	21	10	24	11	17	9
GTGTCTCACAGTTCGA	ref_5492_RC	126	168	174	159	182	146	177	150	182	120
TATCACTTACGCTCCC	ref_5492_RC	3	20	7	10	27	3	25	7	33	6
ACTAATGTCTTCTGGT	ref_5492_RC	0	0	0	0	0	0	0	0	0	0
TACCCGTTCGAGTTTT	alt_5905_new	71	115	94	86	135	94	112	87	121	69
GCTACTCGATTTCCTT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
TTTAATTGGTCGTGTA	alt_5905_new	37	34	33	38	54	29	48	32	57	35
TTTGTGCTGGACGGAA	alt_5905_new	8	11	9	9	8	8	14	5	5	5
CCACACTCAACACAAT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
GGTATTTAAGTCAGCA	alt_5905_new	24	25	13	12	23	22	18	22	26	10
ACTATTGTTTTTGGGT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
CTTCCTAACTCTGGGT	alt_5905_new	6	11	5	3	1	9	6	3	5	1
TTATGCAGGCTAACGA	alt_5905_new	45	40	46	31	47	25	52	38	62	30
CCCGGAATTACTCTTT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
CTGGGTAAGACCCGTT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
CAGATCCCTCGTATGA	alt_5905_new	101	124	129	97	136	115	152	85	140	92
GCTGTGTCCATTCGTG	ref_5905_new	33	33	27	21	37	24	35	25	36	36
TTCTTATGAGAACGGT	alt_5905_new	17	18	20	20	18	14	16	19	20	24
CCGCTGCTATTGGGGG	alt_5905_new	37	59	40	27	67	35	65	27	48	29
CACAGGAGTAGGTACG	alt_5905_new	0	0	0	0	0	0	0	0	0	0
GTATTCGCTGAAATAG	alt_5905_new	24	36	27	24	27	18	31	23	36	18
TGGTATATATAAAACA	alt_5905_new	0	0	0	0	0	0	0	0	0	0
GGTAACTGCTTCTACA	alt_5905_new	11	15	15	13	12	12	18	9	8	8
TGGGAACTCGCAGCAT	alt_5905_new	20	21	19	15	9	13	27	13	33	18
TACTCACTTTTGTGCC	alt_5905_new	27	44	21	22	37	28	54	19	44	19
GGTGTCCTTGAAGCTT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
AAAATAGACGGGGACC	alt_5905_new	29	38	33	23	46	23	41	24	36	20
GACTCTCAAAGGTGAG	alt_5905_new	82	101	110	78	103	90	111	78	99	77
GTAACTGGACTTTGAG	alt_5905_new	0	0	0	0	0	0	0	0	0	0
GAGCTTCACGAGGGGT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
TAAGTCTCCATAAGTA	alt_5905_new	42	42	48	32	49	38	73	39	66	27
TATTTATGAGCTGATA	alt_5905_new	31	34	31	23	27	17	40	20	25	26
GAGTAAATGCTGATTT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
AAAACCGGCTTTAGTT	alt_5905_new	37	52	62	50	42	55	69	52	60	40
CTTTCGCTTCGACAAG	alt_5905_new	86	89	90	54	80	66	86	68	82	59
GCTCTATGGAGCCATA	alt_5905_new	0	0	0	0	0	0	0	0	0	0
CTACGGCCCCGCGAGT	alt_5905_new	2	7	3	8	7	6	4	5	6	1
ATCTTTTGATCCGTGG	alt_5905_new	0	0	0	0	0	0	0	0	0	0
CAAAGGCACACGACCT	alt_5905_new	0	6	2	2	5	4	7	4	11	1
CTCAGACCACGCCGTT	alt_5905_new	8	12	10	12	21	8	10	13	20	12
TCTCGGTCTACCGGCT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
TTCCCGAGGAGCCTAT	alt_5905_new	30	27	29	32	21	18	28	19	38	22
GCCACAATTTTATGTG	alt_5905_new	5	9	11	3	5	3	7	13	6	5
ATCTCAAGTGCCGGTA	alt_5905_new	25	34	31	24	24	30	35	35	47	34
ACGAGGTCAATGCCAA	alt_5905_new	16	27	35	18	24	19	34	19	20	13
TGAGTCTTTGCCTCTT	alt_5905_new	29	30	32	26	43	26	46	21	39	20
CTCCCAGTACGATCCA	alt_5905_new	0	0	0	0	0	0	0	0	0	0
ATGTTGTTCTCCAACA	alt_5905_new	22	25	22	17	17	11	32	16	18	9
TTCTCCCATTGTGTGT	alt_5905_new	17	20	20	14	28	23	20	12	27	17
TATGTCGCGGTTCTTG	alt_5905_new	66	90	92	56	64	60	97	64	77	60
GTCACAGGCGATATTA	alt_5905_new	36	38	34	17	44	34	19	22	43	25
CAAATAGACGGCTTCC	alt_5905_new	0	0	0	0	0	0	0	0	0	0
TCCGCGTCACTCCATG	alt_5905_new	0	0	0	0	0	0	0	0	0	0
CGCTGGATCGAATGAA	alt_5905_new	60	78	89	54	68	48	69	59	59	57
TGGTTGCGTGGTATAT	alt_5905_new	0	0	0	0	0	0	0	0	0	0
GGGATGAAAGTGATGC	alt_5905_new	55	90	70	54	78	54	92	60	104	52
ATCGAACTACATTCTA	alt_5905_new	0	0	0	0	0	0	0	0	0	0
CCGGCCACAGCGATCC	alt_5905_new	0	0	0	0	0	0	0	0	0	0
TCTTAACCCACCATCA	alt_5905_new	54	95	74	58	71	51	65	65	78	47
ATCACTACCAAATGCG	alt_5905_new	68	70	73	53	78	64	82	56	61	38
TACATCGAGCACACCA	alt_5905_new	106	133	110	84	137	81	160	87	131	92
CATCGATCGTGAGGCC	alt_5905_new	0	0	0	0	0	0	0	0	0	0
AGCAGCCCCTGCCAGT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTGAACTATGAAC	alt_3129_reverse	18	21	25	24	17	17	9	12	11	17
CTTAATTACCGACACA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGGACGGGTCAGG	alt_3129_reverse	19	16	24	16	16	15	16	23	15	18
TGTGTATGTTATTTGG	alt_3129_reverse	37	35	43	45	32	25	32	39	23	40
ATTAGCGTGTTATGGT	alt_3129_reverse	5	2	9	1	0	4	0	2	3	0
CTAGCTGGTTCAATAA	alt_3129_reverse	13	14	20	9	18	14	13	8	17	14
AGTTTTGATATTATAG	alt_3129_reverse	1	2	5	3	4	4	3	2	2	1
GGTACCGCCTTTTATG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGGTTGGCGAGTCCAA	alt_3129_reverse	72	49	81	69	50	67	58	75	61	55
GTCACTGATTTTCCTA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CAAACCCGATTATGTG	alt_3129_reverse	3	3	8	6	7	9	5	10	10	4
GGGAGGCATCATTTGT	alt_3129_reverse	37	32	42	35	28	27	28	25	27	25
CAATTGACCTGGGCAA	alt_3129_reverse	28	27	30	20	19	36	21	18	31	16
ATTCAGTTTAGGTGGT	alt_3129_reverse	19	18	26	23	25	26	16	23	20	8
GCGTTCACATGGGTAC	alt_3129_reverse	41	28	44	33	21	40	17	26	11	29
GATTGCAGGTGATCGA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CAACCGTCTAACTTCA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GAACTTCTTCATCCTT	alt_3129_reverse	76	54	97	68	53	48	36	53	59	56
CACCATCAATTAGGCG	alt_3129_reverse	57	28	43	28	38	39	32	22	38	38
CTAAGCTTCTTGTGTC	alt_3129_reverse	97	92	150	116	100	120	108	87	116	95
TGACTCTAACTGACGG	alt_3129_reverse	55	56	61	53	58	66	42	64	46	58
GGAATCCCTGTGATCA	alt_3129_reverse	52	34	53	50	32	56	34	37	29	37
CGATTAACTCTTCTAG	alt_3129_reverse	25	13	29	18	19	18	9	25	12	16
GAATAATCTTGACATA	alt_3129_reverse	38	32	48	38	31	34	38	26	41	33
CCCACGGGGTTGGGTC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTCGATGGCACAGGTT	alt_3129_reverse	50	39	66	57	53	50	31	38	38	35
ACGAATCCTGATTTTG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGACTACGTGTACGTC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTATGCCTCGCATTCC	alt_3129_reverse	13	17	23	11	26	23	16	18	22	16
TCCGTCTTGTTAACCA	alt_3129_reverse	15	16	28	19	14	18	17	8	19	14
AGAGCTTGCACCGTCA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GGTGGGTGATTGAACG	alt_3129_reverse	5	3	5	4	2	2	3	0	1	2
TCAATCTTGTCATTTC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTTGTATTCTGTACCT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCCAAACCCGTGCTGT	alt_3129_reverse	42	35	48	42	53	40	45	43	37	40
GTTTGGAGATGCCATG	alt_3129_reverse	53	46	78	80	44	61	43	71	45	68
GCTCCAGTCCCGGTCT	alt_3129_reverse	51	32	41	39	40	47	38	34	47	35
ACTACCCTCTAAGTGA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAGCTCGGGAATT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGAATTTGTTCGT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTATGCCGGATATGCT	alt_3129_reverse	8	18	9	18	15	7	10	7	15	8
CCTTCCCAGGCCGGTG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTGCATCCTGGGCCAG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTTTTTCTGAATC	alt_3129_reverse	55	44	48	44	43	48	47	53	41	31
TTTTTCAAGCCATCTC	alt_3129_reverse	77	55	58	59	49	67	60	51	54	47
GCTGATATCATTTCTA	alt_3129_reverse	10	9	10	19	7	11	5	20	9	11
TCTCTTCGCCCTCTCT	alt_3129_reverse	2	2	1	2	3	2	1	0	0	3
GGTTCCGGCCCATTCT	alt_3129_reverse	49	42	79	66	41	46	37	56	39	32
ACAGAAAGGTGGAAGA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTACACTCAGAGAATA	alt_3129_reverse	5	21	10	10	18	15	18	18	19	10
GTATGTTTCACGTTTT	alt_3129_reverse	33	31	40	27	28	27	23	38	31	17
TTGTAGAGCTGTTCGA	alt_3129_reverse	7	5	6	9	10	12	9	3	8	7
TAGTTCGTAGGGCGAT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGGTGAACGTACAACT	alt_3129_reverse	0	2	2	2	3	2	3	3	2	7
CTTTGAGATGATCCGG	alt_3129_reverse	58	58	66	75	53	70	64	59	44	92
TCGATCGTGGGTGGTG	alt_3129_reverse	20	12	12	23	9	22	12	21	20	24
ATCGTAGCGTGCCAGT	alt_3129_reverse	46	33	33	37	32	30	37	45	30	46
TTTTCATATATTTCGA	alt_3129_reverse	7	2	7	12	3	4	6	6	9	7
CGGTATGTTTCATCGG	alt_3129_reverse	0	2	1	2	1	0	2	1	2	2
AGCAAACTCATCTGTC	alt_3129_reverse	7	14	24	8	4	8	9	7	6	11
TATTTGACGTACTCTA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GAGCTGGGCCATTTGT	alt_3129_reverse	71	39	60	67	60	53	58	68	61	47
GAGTAGCTTGCGAGTT	alt_3129_reverse	11	15	21	18	18	19	33	16	11	27
TTGGGCTAATTCGACA	alt_3129_reverse	189	142	215	242	144	206	165	182	155	171
AGTGTCAGCTGGTTTG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TACTGTATCCTCCAGG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CAGGGATTCGATTGCA	alt_3129_reverse	38	33	49	41	37	32	14	31	37	29
TATTGATTTATCACCG	alt_3129_reverse	49	26	72	43	44	56	53	38	41	32
TCTATGTTGCGAGTTA	alt_3129_reverse	61	64	96	60	57	49	48	51	68	61
TTTCAGGCCCAGATCT	alt_3129_reverse	47	30	46	43	27	37	35	36	34	37
ACCGATTTGATTGGTT	alt_3129_reverse	42	49	50	46	42	40	62	36	36	40
ATATCTTGAGCTTTTA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCGCCGAGTGGGCGGT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
AAAACTCTTAAATTGA	alt_3129_reverse	7	6	3	8	4	9	5	3	5	5
TCTCAGGTAGATTTAC	alt_3129_reverse	13	13	12	17	11	17	16	11	11	19
GGCTGCGGACAAACAT	alt_3129_reverse	4	10	10	6	4	2	5	2	4	6
CATTTTTAGTCGCAGG	alt_3129_reverse	47	31	74	42	43	48	41	35	43	38
TTATTATTGGAAGCTA	alt_3129_reverse	30	36	56	40	32	49	32	30	48	43
CGTTCTGTGGTTTCTC	alt_3129_reverse	3	9	17	10	13	8	11	11	5	9
CCGAATACAGCTTATT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTGTAAAGGTTCT	alt_3129_reverse	26	19	24	19	27	20	22	19	14	18
GCATGTTACGTAGAGC	alt_3129_reverse	30	23	25	23	16	21	20	20	25	19
TCTAAGTGCATTCAGT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
AACCTTGAAGCTCGCA	alt_3129_reverse	18	15	20	15	16	11	19	13	15	16
AGTCTTGGAGGTCGTT	alt_3129_reverse	2	4	6	6	3	8	5	5	8	5
AAAGCTGATCATGGCA	alt_3129_reverse	21	12	19	15	5	12	10	10	9	9
GCCTAGCCCTTTCGAC	alt_3129_reverse	9	12	18	11	12	12	18	3	11	8
TAACTCCGGCTATTAA	alt_3129_reverse	22	13	24	22	20	21	15	19	11	14
CCACGTTCGTCGCCAA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CATTCAGAAAAGTTAT	alt_3129_reverse	2	1	1	4	4	2	3	3	2	10
TGTTCTCCCTAGTATT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GTGAGTGCACTACCCG	alt_3129_reverse	8	6	12	26	7	11	10	11	12	11
TTGCATGATAGCGTGT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GCCCATGCAACGACCA	alt_3129_reverse	48	38	48	49	41	40	62	45	56	53
ACCAATTCGGATGAAG	alt_3129_reverse	38	25	36	34	34	35	35	32	33	34
GCTATAGACTCGGGGC	alt_3129_reverse	40	33	72	52	48	46	48	56	52	39
CGATGTTATCATTCTA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTGGCGAACCAAG	alt_3129_reverse	0	0	5	1	1	1	2	1	3	1
ATTACTTTTGCAAGGG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTAACATCTCATATAA	alt_3129_reverse	11	7	13	10	5	7	7	5	10	3
CTTTTAAATGCAAACT	alt_3129_reverse	60	52	61	61	47	44	71	62	71	64
CCTCTGCACACTATAT	alt_3129_reverse	38	53	67	47	33	29	51	44	58	34
GTCCATCGCGTGCTAG	alt_3129_reverse	25	24	49	45	38	39	46	28	34	47
CATCTATGCCCACTAC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTAGTTCTTGTGT	alt_3129_reverse	14	12	15	20	17	23	21	26	22	11
AGTGCTTAACCTCGTC	alt_3129_reverse	22	26	25	17	30	21	19	18	28	16
GTAGTTACGCAGATTT	alt_3129_reverse	9	6	13	2	9	4	3	10	5	0
TACCTTAAGGGCATGA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CGACTTCTGGCCGAAG	alt_3129_reverse	74	69	81	75	46	61	69	67	58	63
TCGGAACATTATTTTT	alt_3129_reverse	84	76	128	130	92	90	90	106	106	93
TACAACCATGATTCGA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CAAATTCCCCAGAGTA	alt_3129_reverse	21	4	28	18	9	8	9	12	10	14
CTGGGCTTTTCGACGG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGAGAGTTTACGCGAA	alt_3129_reverse	54	54	54	59	46	52	47	55	62	52
GAGACTGTGCCGGTAA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTTAGCTAGTCGGCGT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
ATTCATATCCTGCAAT	alt_3129_reverse	44	61	85	65	52	56	43	61	56	41
GGCCGCTTAGTGCGAC	alt_3129_reverse	20	12	29	17	6	17	19	17	16	10
GCTCGATAGCATATTC	alt_3129_reverse	23	22	37	35	26	29	37	35	26	29
ACCCGGTCTTACTGAC	alt_3129_reverse	4	5	0	0	3	0	9	1	3	3
CGTTACTTTGTCTGTA	alt_3129_reverse	11	3	5	8	4	6	3	6	9	3
GTAATTAGTTGACATT	alt_3129_reverse	123	100	151	122	84	107	84	114	109	112
ACCGTTATTCCTGTCT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTGGGTTTTAATA	alt_3129_reverse	10	8	16	13	14	11	4	9	14	7
TATCTTCCTGTTAGAC	alt_3129_reverse	440	324	563	486	377	369	327	428	346	393
GTTACTATCTACATTT	alt_3129_reverse	21	16	28	25	22	24	31	32	23	28
TGGGTTATAGGCGGCC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGATCTAATTATT	alt_3129_reverse	24	18	30	37	15	24	13	18	12	21
GACCGACCTGCACGTT	alt_3129_reverse	66	69	88	82	52	81	62	51	55	74
GTCCGCGAATTCTTAT	alt_3129_reverse	71	31	99	86	40	69	38	58	30	53
CCTTCCTAATTAGCCT	alt_3129_reverse	13	2	18	14	14	9	10	7	7	11
AGGGGCTTTTTTATTA	alt_3129_reverse	10	6	10	13	9	9	9	6	12	8
GTGAAAAAGTTTAAGT	alt_3129_reverse	25	20	32	20	30	26	20	23	33	23
GTAATATGCCACCCTG	alt_3129_reverse	4	7	10	11	7	8	5	8	13	1
GCGTGTGAATGGAACT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CCGGGCAGCTTCTTTA	alt_3129_reverse	4	7	9	8	4	10	3	9	3	7
CTATAATATATCGTTG	alt_3129_reverse	70	47	94	68	55	74	54	66	59	75
GTGACGCTCGGTTATT	alt_3129_reverse	16	10	15	14	9	18	4	32	16	5
GCTGACCTTTCATGAT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTGCTACGGCACAAGC	alt_3129_reverse	37	35	59	74	47	52	45	47	38	48
AGCGCGCATTTGGGGA	alt_3129_reverse	36	32	48	56	43	46	49	32	50	44
TGTGATAGAATCAATT	alt_3129_reverse	102	58	136	95	71	86	72	97	85	66
CGGATCAAATACTGTA	alt_3129_reverse	53	67	56	55	51	55	57	58	48	60
CAGTACCCGGCACCTG	alt_3129_reverse	79	49	107	73	54	64	47	61	56	65
ATCTATTTTATAGCCA	alt_3129_reverse	53	26	49	55	40	54	37	37	49	32
CCGCACATTGTCCTTG	alt_3129_reverse	4	6	5	5	6	2	3	3	2	3
CAATAGAGGTATCTTT	alt_3129_reverse	44	37	44	43	31	25	30	41	42	46
CTCGCTTTACAGCTAT	alt_3129_reverse	27	16	26	28	11	21	13	24	10	13
TACTACGGTATTCTTC	alt_3129_reverse	18	16	16	17	18	20	25	10	23	17
TCCCCAGTTCTTCGCG	alt_3129_reverse	59	40	50	53	37	58	51	33	42	32
GTTCACTTTTATATCG	alt_3129_reverse	187	158	234	212	180	187	186	178	167	195
GGGATTACCGTTCACT	alt_3129_reverse	15	16	13	8	15	22	7	15	12	14
CATACGACGGCCGTTT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TGACTTGAAACGTCAG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
AAATTGGCCGATTCAC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCGTTTGCTCCC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GATTTATCTGAGTGTG	alt_3129_reverse	47	43	60	41	57	27	37	22	42	45
AAAGGGCTAGCATGGG	alt_3129_reverse	16	13	24	16	10	17	11	21	7	10
AACAATCGTGACATAT	alt_3129_reverse	77	61	87	66	43	64	36	57	65	59
TAGGTTTCATTTGGCA	alt_3129_reverse	34	14	27	20	23	24	22	27	29	25
AACCCCGGGTTTCAGC	alt_3129_reverse	82	82	96	108	93	78	90	97	98	76
GTTTGTCTCGTTTCTC	alt_3129_reverse	89	55	113	85	43	79	65	81	72	69
AGCATCTGTGCCTCAG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGTGGCCAAGTGC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGTCAAGTCTGTG	alt_3129_reverse	104	73	118	111	60	95	70	97	108	82
TCGGGGCACGTGGGGC	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TTACAAAGTCGGCGCG	alt_3129_reverse	12	7	21	15	12	6	25	17	3	20
TCGGCACCCGTCACCC	alt_3129_reverse	9	8	26	9	11	19	11	18	12	20
TCGGTGTGTTTTACAC	alt_3129_reverse	19	17	22	26	19	26	13	16	14	18
CTGCATGTTACTCTAA	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
ATATCTCAGAAGTTGG	alt_3129_reverse	121	79	130	47	83	88	76	87	112	88
ATCCTCCTTCGTAGCT	alt_3129_reverse	11	5	7	16	8	8	6	12	6	11
TGCGATGTTGCGGGCT	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTAACTTTCCGAC	alt_3129_reverse	20	20	38	24	22	31	23	27	28	26
CGCTACGGTGTGTGGA	alt_3129_reverse	28	34	30	32	40	20	38	19	33	15
GTAAGCGCATATGTGC	alt_3129_reverse	41	43	44	52	36	40	49	32	35	42
GCCATGTGCTTATGTC	alt_3129_reverse	21	31	40	42	25	37	36	29	36	29
CATCGAGCCCAGTTTG	alt_3129_reverse	8	4	13	12	5	18	13	5	5	4
GTTAGTATTCTCAGAT	alt_3129_reverse	31	29	51	47	26	27	45	39	35	37
CGATATTTATTACGTT	alt_3129_reverse	45	32	66	64	52	52	45	48	71	58
ATACTGTGACACCAAG	alt_3129_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCACTTTGAGTCA	alt_3129_reverse	159	127	178	157	112	134	115	151	134	136
CGCCCTGGGTTTCAGG	alt_3129_reverse	59	53	82	93	53	64	52	78	56	57
CGCTTCACCATTTTTG	alt_3129_reverse	54	58	74	45	71	48	66	47	80	48
TCCAGAATGTATTCCG	alt_3129_reverse	5	0	4	6	0	3	0	6	4	4
AAGACCTTATATTGAA	alt_3129_reverse	15	12	23	14	31	14	16	19	13	19
GCCACCGACGGTTCGA	alt_3129_reverse	74	136	102	75	97	82	94	61	93	68
ACGTTAGTCATCTCAC	alt_3129_reverse	38	26	55	34	45	48	39	46	29	48
TCTGCCTTAGCTACAC	alt_3129_reverse	53	45	64	51	52	61	42	54	39	43
CGAATTGCATCCCTTA	alt_3823_missing	7	12	12	5	12	6	17	5	17	7
GTGCGTCCTTCTAGTC	alt_3823_missing	19	32	33	18	48	20	49	17	48	22
GTTTCCACCATCGTTG	alt_3823_missing	35	69	38	38	55	43	65	29	70	34
GTCATTACCCGATTTA	alt_3823_missing	0	0	0	0	0	0	0	0	0	0
CCAAGGCTATTCCGGG	alt_3823_missing	14	49	23	19	41	25	33	9	55	16
CCTGTCCCAATCGCCA	alt_3823_missing	3	6	4	4	3	4	5	5	8	5
GTCCCATTTTATTCTC	alt_3823_missing	126	192	141	110	181	117	246	106	177	90
GCGCTAGAACACGGCT	ref_3823_missing	15	33	15	11	30	11	29	6	39	13
AGCTCAGTTTATAAGT	alt_3823_missing	4	7	6	0	5	3	11	2	3	0
AAGTGCTGCCGGCTGT	alt_3823_missing	149	297	202	148	269	144	306	130	259	128
GCCTTGATGGCTTGGT	alt_3823_missing	0	0	0	0	0	0	0	0	0	0
TAATTGGGCTCCTTCA	alt_3823_missing	9	11	9	9	12	6	10	3	19	8
TCAGTGCGGTTCTGAG	alt_3823_missing	0	0	0	0	0	0	0	0	0	0
GTATGAGTAAGATAGC	ref_3823_missing	0	0	0	0	0	0	0	0	0	0
CCCCGCTCACTTGCGA	alt_3823_missing	0	0	0	0	0	0	0	0	0	0
TCTGCCGTTGTGCGGT	alt_3823_missing	15	56	16	11	51	16	61	23	56	20
CTGAGCGTACGTCAGC	alt_3823_missing	28	71	26	45	73	32	85	25	67	31
TGGGTTCTTTTGTATC	alt_3823_missing	0	0	0	0	0	0	0	0	0	0
TGCTCCGCCGTTTTGT	alt_3823_missing	0	0	0	0	0	0	0	0	0	0
CATCCAAGTGCGATCT	alt_3823_missing	0	0	0	0	0	0	0	0	0	0
CAACCTAGTAAAAACC	alt_3823_missing	46	85	59	56	95	46	88	47	99	35
CGTTCCAGGGCGTGGT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TATTTATATGAAATTG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
GTGGCGTTGTATTGCT	alt_3238_RC	5	11	18	4	10	21	21	6	23	10
TTAATCTGGAAACCTA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
ATCAAATGAAGAGGTT	alt_3238_RC	27	42	37	38	39	36	50	22	62	26
CTCATGTTTGAAGGTC	alt_3238_RC	5	11	5	4	19	10	20	10	23	9
TTTTTTTCTGTTGGCA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
AGCGGTCGATCATTTA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
CTTGAAGCTGGAATGA	alt_3238_RC	20	15	30	17	23	23	20	16	26	7
TGCGCAGACCTACTCT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TGAGTGGAGTTTCTTC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
ATACTACTTTTAGGAT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
ACCACGTTGATATTCG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTGAATTAAGCG	alt_3238_RC	12	22	20	9	14	11	13	12	18	10
CTTCGGACGGACCTCG	alt_3238_RC	5	1	3	0	2	1	0	1	1	1
CCCTGACTTTCGTCTT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TGGCTAGGGCACATTT	alt_3238_RC	85	105	100	79	102	75	93	68	120	67
CGTGTGGCGTTGTAAA	alt_3238_RC	0	5	1	3	5	0	2	1	5	4
AAGGCCGGTACTTGTC	alt_3238_RC	39	60	37	38	36	37	55	35	56	24
TTGCTCATCTCGCAGC	alt_3238_RC	9	15	9	6	13	7	10	9	10	8
GAATACGTGGTCTTCT	alt_3238_RC	14	21	19	14	17	22	18	18	25	23
CTTGGTGTTGGACGCT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TGCTGACCCCATATGC	alt_3238_RC	45	67	66	45	65	22	69	32	90	33
AGGGTCTTAGATCCGT	alt_3238_RC	40	39	45	36	73	42	53	57	54	40
GAGAAACCGCACGTAC	alt_3238_RC	1	4	0	0	2	1	0	2	0	0
GTACAGCATAGTATCT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
AAACGAATAGTATGAT	alt_3238_RC	2	12	3	2	3	7	5	5	9	8
CTCCTACACTACTGCC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
GTTCTACTATATTTTT	alt_3238_RC	25	58	55	43	54	36	71	37	67	36
AGACGCATGCTGAGGT	alt_3238_RC	6	12	11	8	7	9	13	9	17	5
ATTATATCGTCTTTTC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
GTAAGATTAAGTGCGG	alt_3238_RC	11	16	5	9	13	9	15	13	17	11
CGCTTGAACAAAGCTT	alt_3238_RC	27	36	40	29	40	22	31	33	37	25
TTCAGTTTTTGCCAGT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
CTCTGAAAAACCACAA	alt_3238_RC	10	12	9	13	14	13	15	10	22	11
GCGATCGTCATCTTCC	alt_3238_RC	90	106	110	80	115	91	122	93	144	70
TTCTCCGGATGTCAGC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TCATTGTTTCGCCATT	alt_3238_RC	17	20	20	24	27	18	22	17	29	20
CGACCCCAGTTCTTGA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TACTTCTAAGTTAGGG	alt_3238_RC	9	22	16	13	29	18	41	18	22	14
TTGGTGCACAATGCAG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TATAAGGGCCGCCATT	alt_3238_RC	9	23	17	18	20	18	19	11	14	18
TTGAATAGTTGTTTTC	alt_3238_RC	1	6	2	2	3	6	5	3	5	1
AAACGCCTGTACAATG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TTGGCTTCGAAATTTT	alt_3238_RC	32	26	36	34	26	25	39	21	40	16
ATGCGGATCTGCATTC	alt_3238_RC	64	89	77	61	55	44	62	51	61	66
TCATATATCATACGTA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
CCTTGAATAGTGGGCC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
CTTAACTTGACATCCT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
CTTATACGGGTTGCTC	alt_3238_RC	21	26	16	14	17	9	24	13	26	19
TACGACACTTGGTTAG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TGTCGGTCTGACCTAT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
GTGATCGGGGTTTGGT	alt_3238_RC	9	7	5	8	16	2	5	10	9	14
TTTATGGGCAACCATC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TCAACTTTAGCTATGG	alt_3238_RC	21	51	35	26	45	25	53	27	36	26
CTATTACTGCCGGCAT	alt_3238_RC	40	45	46	38	56	34	36	38	46	42
TGGCTTATAGGGACGT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
ATTGCCAAGGTAGTCG	alt_3238_RC	1	3	1	1	1	0	2	0	0	0
CCGCATTCTTCGGGAT	alt_3238_RC	18	30	27	24	35	22	34	23	29	24
TTTCTCCTGAAAAGCT	alt_3238_RC	19	23	15	18	23	30	17	18	39	15
GTATGACCCTTTGTTC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
CGGCTTCTTCGCGTCA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
CCTAATATGTTGGCCT	alt_3238_RC	21	47	20	36	33	30	30	22	28	14
GCAATGCCTGTATTCG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
GGTGGCCCAAGCTAGC	alt_3238_RC	3	5	1	7	6	4	4	4	11	3
CGACTTCGAGTAGTCA	alt_3238_RC	17	37	19	16	40	23	35	21	59	21
GATTAGCGATCCTTCT	alt_3238_RC	1	8	3	4	8	9	7	6	3	3
GGACCTTGGCCTCTGG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TAGTTCGGAGGCAGTG	alt_3238_RC	10	18	20	21	15	9	24	12	22	10
AAGTAAGCACACTTGA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TGAACGTCTGATTTTT	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
GTTGAAAGAAGTTTTG	alt_3238_RC	5	12	9	10	12	7	8	5	6	5
TAGTTAGGAAGATGAA	alt_3238_RC	4	2	4	5	4	3	2	2	5	1
CGTTTCCTCACAACGC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TCGGTATTTGGTCTTT	alt_3238_RC	5	5	5	12	9	6	11	9	18	8
GTTCCCTTGTGTGGTG	alt_3238_RC	9	19	15	21	24	15	28	13	29	18
ATTTCATATGAAACGT	alt_3238_RC	30	35	34	27	44	24	33	21	38	23
TCCAGCCGGGCTCGTG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
AATTTATAGGCCCGCA	alt_3238_RC	18	19	12	12	16	17	24	13	26	18
CTGAGGTTTCGACTTC	alt_3238_RC	29	71	56	43	70	42	96	33	101	50
AGTAGGACCTGTCAAA	alt_3238_RC	49	71	49	41	68	37	70	44	83	40
CGCCTGAAACTGTAAG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
AGCCATTGAACCTCGT	alt_3238_RC	7	11	6	3	9	3	7	2	10	2
CCCAGATGCCCGCAGC	alt_3238_RC	7	6	9	2	13	2	12	5	8	2
CTTTGTTTGGTTGATG	alt_3238_RC	11	16	12	7	15	16	11	6	19	8
GGATTACTGATAATCC	alt_3238_RC	25	29	27	16	35	23	35	25	34	20
GACACCCAACGCCGCG	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
AACAGACATTATTTTT	alt_3238_RC	30	32	24	34	39	18	56	32	38	19
ATGCGGATGATGACTT	alt_3238_RC	9	12	9	11	7	11	15	7	9	8
CTGCGTCATGTCGGCC	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
GCGCGAATCCGTTCGG	alt_3238_RC	2	2	0	0	3	1	2	0	2	1
ACACTACGTCTCGTCA	alt_3238_RC	0	0	0	0	0	0	0	0	0	0
TGCTGTAACTTATACG	alt_3238_RC	3	4	8	7	8	4	9	1	7	8
GAGGTTTCCGTGCGTC	alt_3238_RC	8	9	3	4	12	3	6	8	2	5
CATGATAGTGAACGTA	ref_5871_new	4	2	8	4	8	2	4	5	10	2
GCCGCCTTTCTCATAT	ref_5871_new	0	0	0	0	0	0	0	0	0	0
TTGATCATTGGTATGC	ref_5871_new	0	0	0	0	0	0	0	0	0	0
GATCTTCCATGGGCGA	ref_5871_new	15	12	20	16	11	21	15	13	7	10
CAGGGAGAGGGGTCAC	ref_5871_new	0	0	0	0	0	0	0	0	0	0
GGATTGGCTGTGCCCT	ref_5871_new	3	4	8	10	11	2	7	4	10	5
AACTCGTTTCTAAGTC	ref_5871_new	52	28	50	41	32	35	28	42	36	35
CCTCACTCAACTGGTG	ref_5871_new	62	35	71	63	42	71	50	48	43	54
CTTGAAAATTCTTACC	ref_5871_new	79	60	114	71	74	76	68	91	82	66
TTGGGTACCCTATTCT	ref_5871_new	0	0	0	0	0	0	0	0	0	0
ACTCAAAGCTTCTTTA	ref_5871_new	103	48	107	108	47	99	55	88	41	97
TAGGTTGCAAACTTTC	ref_5871_new	102	68	102	80	63	75	70	90	77	84
CCTATTGGGTATTTTC	ref_5871_new	12	6	12	18	3	8	9	12	6	9
CCTAGTAAGTAACTTG	ref_5871_new	0	0	0	0	0	0	0	0	0	0
AATACCGCCCTGGGAC	ref_5871_new	0	0	0	0	0	0	0	0	0	0
ACCTGTTGCTTGCAAT	ref_5871_new	0	0	0	0	0	0	0	0	0	0
TTTTTTACACCAGTAA	ref_5871_new	34	14	28	34	22	36	24	29	24	29
GGCTTTTACGTAGTTA	ref_5871_new	176	125	218	190	128	155	126	187	105	156
AGAATTAGGTACTTTG	ref_5871_new	0	0	0	0	0	0	0	0	0	0
TACTATGCCCCGTTTG	ref_5871_new	5	10	10	12	6	11	7	10	7	3
ATAACAAGTGGATGCT	ref_5871_new	33	12	23	19	16	28	13	19	10	25
CTACGCTGGATGGGTG	ref_5871_new	0	0	0	0	0	0	0	0	0	0
GTGTAAGACTCACAAC	ref_5871_new	30	26	49	34	22	29	27	27	26	34
GAGGATATCTGACAAA	ref_5871_new	34	29	39	47	25	41	30	47	20	19
GCTGAGCAAGCTCAAA	ref_5871_new	40	21	55	25	23	27	25	44	18	39
TTCTGAGGCGAGCAGG	ref_5871_new	1	1	2	0	1	1	1	2	1	1
CAACTGTGGTTGGATT	ref_5871_new	8	5	14	12	3	13	7	10	9	17
TTGCGTCTATGGATGA	ref_5871_new	34	17	23	37	16	24	20	15	16	26
TCGTCGGGCGTCGAGA	ref_5871_new	3	4	10	4	9	10	6	11	5	8
TAGCCCTGGTGTTTCG	ref_5871_new	49	34	67	49	31	59	34	38	32	46
TATAGCTGGGAATAAT	ref_5871_new	11	8	12	14	16	18	9	18	9	18
CTAGGTGATTCAAGGC	ref_5871_new	0	0	0	0	0	0	0	0	0	0
CTTTCGACATTGAAGC	ref_5871_new	225	152	319	260	133	273	177	249	145	208
TGAATCCTTCGGTTCT	ref_5871_new	76	57	101	93	44	75	61	76	51	64
GTCATTACGATAGTTA	ref_5871_new	3	2	11	9	2	12	6	5	8	6
GCTTCCACGCTTTCTG	ref_5871_new	43	24	52	50	28	26	20	39	24	29
TTGGATTCTGAACAGT	ref_5871_new	2	2	6	4	1	6	1	2	4	1
CAGAGACGCTGGAGCA	ref_5871_new	25	22	32	35	37	24	37	36	24	28
ACTCACTGCTAAGTGC	ref_5871_new	190	144	208	194	132	166	164	143	158	139
TGAGTTTGTTCCTTGT	ref_5871_new	48	28	62	57	19	46	35	30	30	50
TAAGGTTTACCTTCGA	ref_5871_new	34	32	19	15	35	16	30	15	37	26
TCGGCTTTTCTACTTC	ref_5871_new	7	2	8	10	7	13	5	5	7	6
ATGGCCCCGGATGCCC	ref_5871_new	110	72	128	130	65	107	57	107	60	106
TCATCTGCAATGTCTT	ref_5871_new	2	2	6	6	2	7	6	5	2	12
TTAGCTCAGAAGCATA	ref_5871_new	0	0	0	0	0	0	0	0	0	0
CCCGCTACGAGTCGAG	ref_5871_new	11	8	19	7	3	16	4	7	6	9
TCGGAGAGCCGGTGAC	ref_5871_new	7	5	11	4	2	13	8	12	7	8
CTATCATACAGTGTAC	ref_5871_new	18	15	20	29	13	23	13	25	15	17
CAGTCCTTGTACCCCT	ref_5871_new	0	0	0	0	0	0	0	0	0	0
TCAGGAATGTCACTTA	ref_5871_new	22	11	18	12	5	9	12	11	5	9
GTTCCGATGCTCGTGT	ref_5871_new	49	26	72	51	36	52	49	52	31	45
CTGGCCTAGTACGTGA	ref_5871_new	49	36	61	50	37	53	46	57	46	59
CGGCTATCTTCAAAGG	ref_5871_new	167	89	192	133	95	170	83	164	100	166
TCAGTAATTGCTGCAA	ref_5871_new	51	32	63	70	50	42	38	60	39	42
TTCTGTCAATACCGCT	ref_5871_new	8	5	23	11	14	14	9	15	16	9
TGATCAGACGACCTTT	ref_5871_new	72	50	64	64	28	60	40	55	28	60
CTACATGAGGTGGGGC	ref_5871_new	19	16	29	35	20	21	11	18	12	19
CTTACTACCGCGTGTT	ref_5871_new	7	1	7	6	5	7	2	3	9	5
GGAGCTTCTCTTTTTT	ref_5871_new	103	53	123	115	65	101	66	110	53	93
ATATATTAGAGTCCGT	ref_5871_new	20	16	31	24	15	26	15	25	14	23
CAAAGGCGGTCATGGA	ref_5871_new	0	0	0	0	0	0	0	0	0	0
TGTGGGGGTATGTACC	ref_5871_new	79	48	67	67	33	52	41	67	45	40
GGTTATTTCACGACCC	ref_5871_new	0	0	0	0	0	0	0	0	0	0
ATCCGCTAAGTGTTAG	ref_5871_new	0	0	0	0	0	0	0	0	0	0
TCTGTCATTGCGGTCC	ref_5871_new	8	12	12	8	10	5	5	7	8	16
TGTGATTGGTCATTAT	ref_5871_new	19	17	36	39	22	20	19	16	17	25
TAGCGATCGCTGCTAC	ref_5871_new	94	59	136	109	58	111	76	83	67	73
AGAACCCTTTCAGCAC	ref_5871_new	0	0	0	0	0	0	0	0	0	0
GTAGACGCACTAATGT	ref_5871_new	9	10	17	7	5	9	3	18	16	9
CCGATTGGTGCCCCTC	ref_5871_new	218	138	238	205	111	177	144	184	151	195
TAATTCGATAATTTAT	ref_5871_new	127	75	131	123	52	91	90	113	70	100
TCTTGCGATATACAGA	ref_5871_new	116	88	166	144	92	140	125	124	124	132
CTCAGGGTCTACTCCA	ref_5871_new	19	14	12	21	18	31	18	16	17	14
TTGGGCCTACATGGAG	ref_5871_new	137	78	139	148	51	136	67	106	78	101
CTCCACGAGTGGGTTC	alt_3351_RC	26	31	25	28	47	17	38	17	20	23
TTAGTTGGAAGGGCAC	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
TCACCGTGTTCGGTCC	alt_3351_RC	13	28	21	14	32	25	34	24	28	18
TGTCATTAAATCATTA	alt_3351_RC	89	105	102	85	108	83	117	82	116	74
AATTTTGACCGCCTCT	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
TCGATAGTGGCCTCCC	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
TCGTGTGATTGTCAAA	alt_3351_RC	11	10	4	4	11	4	8	7	8	2
GGTAACAGTGCAGGTT	alt_3351_RC	19	27	23	23	35	18	32	23	32	20
TCGAAATCGGGGCCTC	alt_3351_RC	10	12	15	12	24	9	26	10	22	7
TGTCTTTCAGTCCTTC	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
GCTGAAGTATCACATT	alt_3351_RC	10	15	14	16	14	16	15	11	25	11
CATTGTACCGACTTTT	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
ACACACTAGTGTTTAT	alt_3351_RC	38	36	40	24	37	32	47	27	43	25
ATCGACTGCAATAGAA	alt_3351_RC	80	87	73	83	85	76	122	59	110	68
GTTCTGCTTAACCATT	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
TCTTTGCTAGGCACTT	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
CTGAAATCAACATGGT	alt_3351_RC	9	9	13	10	15	10	14	10	8	9
CCGACATCTATCGTTG	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
AGGTGCATGAATCAGG	alt_3351_RC	2	3	1	3	2	5	3	3	7	5
GGCAGTGCATTTCATT	alt_3351_RC	20	22	34	26	32	26	28	19	19	23
TGGGTAATTTTTCATG	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
GGAATTGCACGCTATG	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
TTGATTATTTACCGCG	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
CGCCGGGTAAGTATTA	alt_3351_RC	34	50	37	40	64	35	53	39	56	50
CACGGTATTCAGACCG	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
AGCGTCAGCAGGATCT	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
TTCGGCACAATTAGCC	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
ACTACGCTTTCCTGTC	alt_3351_RC	60	89	79	58	89	73	103	49	103	56
GGAACCTTCGTGAGCT	alt_3351_RC	4	5	2	4	9	8	10	5	7	8
GTTCGTATGAACGGCC	alt_3351_RC	24	31	16	16	19	18	19	16	42	20
TGAGACCCGCACGAAT	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
CGAAACGGGTTATTCC	alt_3351_RC	3	5	6	1	2	3	3	5	3	3
ATCTCCGCATACAATG	alt_3351_RC	7	6	9	8	12	7	13	4	9	6
TCTGTTTATCGGTGCA	alt_3351_RC	10	14	14	16	20	11	28	8	15	17
TCTGCGGGACCCGTTT	alt_3351_RC	111	84	108	92	95	71	89	79	94	89
TGGATCCTTTCCGGGT	alt_3351_RC	37	25	34	40	25	30	40	21	27	30
CGTAGACTGCTTCGGC	alt_3351_RC	71	105	101	78	112	87	90	72	114	61
CTAATTTCACGTCTAT	alt_3351_RC	20	13	15	17	15	15	14	10	20	8
ACTTACACGTTGTCAG	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
TTACTAGGCCGAAGAT	alt_3351_RC	9	7	13	8	12	11	5	7	5	6
CCTAGGCATTTTCATG	alt_3351_RC	0	0	0	0	0	0	0	0	0	0
AAATCGGAATAGAACA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTCCTTCTTAGCA	alt_2989_reverse	27	26	19	17	34	25	32	21	35	23
CGTTGTAAGTCACCGC	alt_2989_reverse	42	68	56	53	63	59	68	55	70	54
AAGTGGTCGAGTAGTG	alt_2989_reverse	113	151	158	93	147	108	136	109	140	103
ATGGAATTGTAAGTTG	alt_2989_reverse	37	29	60	45	48	36	62	47	42	27
AAGCTGCTAGGTTATT	alt_2989_reverse	77	84	80	96	65	89	87	70	93	78
AGTAATCTTAGATCCG	alt_2989_reverse	7	4	10	7	1	10	7	5	4	8
TGGCGTGAGCGTTCAA	alt_2989_reverse	13	13	12	10	7	12	10	5	10	8
GGATAAGACCGCCATT	alt_2989_reverse	24	13	20	23	12	28	12	23	22	15
CAGCCGTTAAGCCGCT	alt_2989_reverse	22	32	36	19	22	24	17	22	28	23
GATTCCCGATTAGAAT	alt_2989_reverse	27	27	24	17	27	27	25	29	39	25
TGAAAATCCCGCAATG	alt_2989_reverse	21	20	36	29	16	20	35	11	39	16
GCTAGTCCCTAGGTGC	alt_2989_reverse	22	31	56	36	47	22	62	18	42	29
GGCCGTTGCGGTATCC	alt_2989_reverse	5	7	9	13	10	4	8	6	5	6
ACATGTCTCATCAACT	alt_2989_reverse	58	35	51	38	33	32	49	42	45	41
CCGTTCTCTTACACTT	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CCGATACCACAACCCG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CCAGGAGTATTGCGGA	alt_2989_reverse	20	16	16	15	22	14	18	14	9	25
GACGTTTGGTGAATAT	alt_2989_reverse	2	3	5	7	9	7	6	4	6	5
GTGACTGGTAGCTGGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCGTACAGACTTG	alt_2989_reverse	57	58	83	59	52	67	62	57	58	54
TTCGCAAACGCACTGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
AAATTGACCTGGGCGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TCCTGTCCATGCGCAT	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GTGAATACCGAGCGAC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTCCCGATGCACA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CAATCTTGGCTCACCG	alt_2989_reverse	103	122	150	132	119	112	127	111	125	108
TTTAAGCCGTGTCATT	alt_2989_reverse	6	7	23	12	15	16	28	17	22	9
TTTGTCTACGAAGAAG	alt_2989_reverse	49	56	63	56	67	61	58	62	58	57
TCTGCAACCGGCGCAG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
AGCTTGCGTTTCCTTT	alt_2989_reverse	79	88	99	79	62	80	66	58	77	77
TGTGGTCAGGTGACTT	alt_2989_reverse	29	7	12	12	18	14	21	21	14	11
CTAGGTTTGTAGTCTC	alt_2989_reverse	41	48	42	28	41	50	32	26	62	37
GCATATCCATTGATGT	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CGGCTACTTGGCTTTG	alt_2989_reverse	9	10	17	15	12	5	8	7	9	8
CTTAGCTGATCGGAGA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTCTATCCGGACC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATCCCTTAGGTTTTCA	alt_2989_reverse	25	20	35	28	18	31	39	25	28	34
CCATAGCATCCAGGGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CCAATTCTTTTGTTGT	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTTCGTAGACTAA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CCTCATTAATCGTGTT	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GAACTGTCATATCTGA	alt_2989_reverse	156	150	161	133	155	123	141	132	152	124
TTTTCCTTAGTACAGC	alt_2989_reverse	4	4	2	4	0	6	3	0	6	1
TTTGATTCTGAAGAGT	alt_2989_reverse	18	18	13	13	13	10	14	10	15	5
ACGTCATAATTTTTCT	alt_2989_reverse	32	37	42	37	37	32	40	50	32	44
CTAGAATTGAAGTACG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGACCACGTCAGA	alt_2989_reverse	111	99	107	89	92	59	79	85	82	76
TAGAGCCTGACGTCCC	alt_2989_reverse	2	5	0	1	4	2	8	0	8	2
TTTTACTCTTCGTATT	alt_2989_reverse	299	307	404	332	302	340	305	257	325	256
ACTTAGTATTCTTATT	alt_2989_reverse	44	54	69	51	45	28	49	33	70	44
GTATTTGTTAGCTAGT	alt_2989_reverse	97	98	115	83	92	70	108	80	102	82
ATGAATAGTTCGCTAT	alt_2989_reverse	20	16	19	14	11	14	17	15	34	17
TCCCGACTGTTCCGTA	alt_2989_reverse	22	57	25	22	40	15	67	21	53	23
GGCTCTTTACGATTGA	alt_2989_reverse	9	18	13	6	9	8	13	11	5	16
GAGTTACTGGCGCTCG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CGAATTATTATTACCT	alt_2989_reverse	24	34	39	43	30	26	46	33	28	29
GGTAAGTGGCTCGAGA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGCTTTTGTTGCG	alt_2989_reverse	32	23	33	26	20	28	42	27	27	29
GCGCCAAGGTTACCTC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTCGCACGGTTCATGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CAGTCAACGTCACTCT	alt_2989_reverse	28	25	19	17	33	21	40	23	36	17
TGATGATGCTAAAAGA	alt_2989_reverse	47	34	39	23	34	30	27	28	41	34
TTTCTTCAGGCGGTAA	alt_2989_reverse	78	69	85	70	58	78	57	68	69	61
AAGGCCAAATAAGAAA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTATCTACCGGAACGG	alt_2989_reverse	8	16	12	11	14	10	14	2	15	6
TTTGTTAGTATTTAGC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CGTGTACTCTAGAACA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTGGACTCGTTTG	alt_2989_reverse	26	38	47	29	58	43	47	43	52	33
GGTCACTTTCGATAAG	alt_2989_reverse	5	3	6	7	5	5	5	6	3	6
CACTCTCTAAGGGTCC	alt_2989_reverse	66	73	79	57	84	78	89	61	69	57
CACTCACCTGTTAAAC	alt_2989_reverse	6	76	15	10	72	11	78	9	71	10
GTTTGTGTAGTATTAA	alt_2989_reverse	55	80	74	62	62	55	79	59	68	54
TTCTCCGTAATAAATA	alt_2989_reverse	52	65	60	56	60	57	52	64	48	58
AACTTCACACAGCAAT	alt_2989_reverse	4	6	3	4	6	6	7	2	4	1
GGCTTTTGCAATATTT	alt_2989_reverse	74	51	89	77	55	74	71	69	60	57
ATAAATGGGTCGCGTT	alt_2989_reverse	46	40	56	36	36	54	62	45	50	42
AGGTCAGGGAGAATGT	alt_2989_reverse	83	76	77	88	64	66	65	53	77	58
TGACTCTTGTAGGCCC	alt_2989_reverse	26	29	32	19	25	25	13	24	31	25
ATATCTTGGGCGCTAC	alt_2989_reverse	12	11	15	8	6	7	10	7	14	8
TGACTCCAGCTAGCCT	alt_2989_reverse	19	14	14	16	16	17	18	16	16	3
TGCGCTTCTTAGACCT	alt_2989_reverse	106	97	96	82	96	84	97	76	119	71
TGTTCGCGCTCACGTA	alt_2989_reverse	14	21	26	20	24	14	21	20	18	31
TGTATTAACCGCCCTC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GTATCTCCCGTGTCAC	alt_2989_reverse	25	8	16	7	19	10	12	9	17	13
GCCTCAGATCTCAATA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CATGGCCCCTGAGGTG	alt_2989_reverse	53	37	52	49	51	42	43	32	33	40
CCTTACTTTCGAAAGT	alt_2989_reverse	18	7	13	5	8	3	10	9	8	7
CTCGTCTTCGAGATCC	alt_2989_reverse	6	13	21	15	8	11	28	8	11	8
GTCGGTCGGAGGCATA	alt_2989_reverse	74	95	112	90	68	72	101	65	103	77
GTCCGCTTCCATATGC	alt_2989_reverse	12	21	10	14	15	17	20	14	17	16
CTGTAATTTTTATCTA	alt_2989_reverse	58	43	48	42	50	35	49	45	53	35
TTTTACTCTGTTTTAT	alt_2989_reverse	29	23	46	17	23	26	36	19	25	21
ACTATCACGTCTACTC	alt_2989_reverse	5	0	2	2	4	0	4	2	5	2
ACGAGAGGCTCTGAGC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCTCGTGTCCATA	alt_2989_reverse	10	6	9	5	9	4	12	8	10	10
CTGTTGATCTGGCGCG	alt_2989_reverse	67	60	82	94	73	82	71	62	74	72
CGACGACGAACGAATT	alt_2989_reverse	72	64	90	55	89	111	47	65	83	83
TGGAAGGAATCTCGAC	alt_2989_reverse	8	10	10	22	16	10	8	10	14	13
ATGACCTATAAATAGT	alt_2989_reverse	46	32	51	40	40	46	44	44	67	32
CTGAAGACCTTCTTTG	alt_2989_reverse	35	30	40	24	34	38	30	42	44	34
GCCGTAGGGGTTATTG	alt_2989_reverse	10	16	17	10	14	12	17	10	17	9
TAGGTGCCCTCCTGAT	alt_2989_reverse	17	14	9	21	24	11	28	9	24	18
ATCTGTGGCACGGCTC	alt_2989_reverse	23	33	43	31	36	43	27	30	41	36
GGATAGGAGCATGTAA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTCATGGGGCGGATAA	alt_2989_reverse	14	17	27	18	14	24	23	17	21	10
CTATATTTTAATAACA	alt_2989_reverse	89	88	92	76	76	65	72	98	95	58
TAAGGGGACGTTGACG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CAGTAAAGGCGGGGAT	alt_2989_reverse	59	26	62	38	48	37	48	59	51	43
GTCTCCAAGGCCTAAG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CATACTCTTACATAAT	alt_2989_reverse	29	39	64	39	42	62	38	36	43	44
GCATCACCTCGCCGGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CCGGAGCTGCCAGCTG	alt_2989_reverse	108	89	128	116	108	105	114	89	119	88
AGATATAGTCCGTGTC	alt_2989_reverse	24	16	17	14	17	14	14	22	11	12
CCATATAAAGCATACT	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
ACAAGTTCACTGCTCC	alt_2989_reverse	72	67	86	74	80	68	77	68	84	71
CTCTTTGCAAATGGTT	alt_2989_reverse	14	20	20	16	36	29	23	23	28	16
CTTCGGCAATTCAGAA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GAGCGCGGAAAACCCC	alt_2989_reverse	54	51	59	48	63	46	48	56	41	37
CCCTAGGTAGCGCCAT	alt_2989_reverse	87	79	103	109	81	86	108	88	105	76
TATCTGCTAATGTGCA	alt_2989_reverse	14	3	13	8	9	6	19	19	17	8
GATCCGTGCACTCACC	alt_2989_reverse	32	39	34	28	33	37	50	24	44	31
TCTCCATTCTGTTGCA	alt_2989_reverse	82	101	109	68	99	75	106	45	84	76
ATGGCTCAGGATTGTG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TATGCCGAGTTATGTT	alt_2989_reverse	27	25	48	43	29	33	39	23	53	29
TCTCACTATCTGTGTT	alt_2989_reverse	4	6	8	13	6	4	10	12	6	10
CGTGGCCATCGTAAAA	alt_2989_reverse	0	4	1	1	8	0	9	2	13	0
GGGCTGTGTCCGAATT	alt_2989_reverse	18	21	32	26	17	32	22	45	21	23
GGGAGTACCCACTCGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
ATATTACCGCGGACAT	alt_2989_reverse	58	32	86	69	58	45	50	39	48	67
GGAGATCTCTTCTCGG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGTGAGCATGTTA	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGCTGCCGGGCAC	alt_2989_reverse	63	47	66	43	58	53	55	43	53	57
TCGTGATAGCATCGGG	alt_2989_reverse	25	27	26	26	18	12	19	16	27	16
CCCTTGTTATTGCTCC	alt_2989_reverse	21	32	7	10	15	9	21	10	22	10
ACATGCCGAGTCTTAG	alt_2989_reverse	12	29	20	14	18	19	26	21	15	23
AGACCTAGTCGCTGGG	alt_2989_reverse	16	13	12	5	9	12	16	10	10	12
AATTTATCCTCTACGA	alt_2989_reverse	44	42	61	53	42	45	56	46	42	34
TGATCCTTATTGTATA	alt_2989_reverse	71	77	98	78	53	72	64	42	83	58
AGCATACCCATAGAGC	alt_2989_reverse	38	40	29	39	43	36	38	33	51	30
TGGCTACAGCCTGTCG	alt_2989_reverse	38	58	67	46	70	44	74	47	73	41
GTCATTGATACTCCGT	alt_2989_reverse	37	41	48	47	52	26	36	38	38	25
GTAACGGAACCTTGAG	alt_2989_reverse	14	27	31	17	22	22	24	26	27	20
AATCGACAGACAGTCG	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCAGTTGAGAAGT	alt_2989_reverse	26	11	27	21	19	25	22	10	35	19
GGTGGTCCCGTGAATC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TCATCTCTAGGCCTTC	alt_2989_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTACATGATTCGC	alt_2989_reverse	60	62	93	75	69	64	65	73	97	78
GCTGGATCTTCGTTCA	alt_2989_reverse	31	25	41	23	35	33	30	41	42	43
TGCTTAAGGGCCGAGC	alt_2618_fdr	396	108	554	443	125	431	140	431	121	381
CTGTTGTGCAGTCCCA	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TTCACTACGGTCTCGT	alt_2618_fdr	2	8	9	6	11	4	7	2	9	11
TTATTTAGTGACACGG	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGGACCTCTGACG	alt_2618_fdr	122	40	127	153	42	124	35	92	46	108
AGCCGTACAACCAACT	alt_2618_fdr	46	11	62	51	12	49	13	36	20	37
TTAGCAGATGAGCTTT	alt_2618_fdr	130	33	187	142	34	142	55	105	59	131
CACTGGAAATGACTTG	alt_2618_fdr	207	58	249	198	52	227	66	222	50	177
GTTTTCCGTCTACCGC	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGACCCAGCGTTC	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGCATTCGGTTCC	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
GTAACTAGATTCCTTT	alt_2618_fdr	25	3	30	25	2	24	6	29	11	22
CACTTTTGATCATGTG	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCTACCGCCTCG	alt_2618_fdr	277	62	349	306	70	277	68	271	75	258
CGGGTGACCTATCTCA	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TCGCAGGTTCATCGTC	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CGAAATTTGTGGCTCA	alt_2618_fdr	84	20	132	118	26	95	22	80	19	96
CTGTCAGTCCTCGGTG	alt_2618_fdr	112	32	155	144	28	106	43	120	39	107
TCAAAGAGATCGGGCG	alt_2618_fdr	273	99	315	318	97	271	114	258	99	258
GTCTTCCGCGTCTGTA	alt_2618_fdr	222	108	297	264	120	250	126	232	128	202
TTTTCCGATAAGTGTG	alt_2618_fdr	27	8	24	29	6	21	10	16	11	27
TGCTTATTTTGGTTCA	alt_2618_fdr	39	4	37	23	10	25	7	27	15	23
TGTCAACGTTATCACA	alt_2618_fdr	8	6	12	5	1	5	3	9	1	5
ACCCCGTCAGAACTGA	alt_2618_fdr	71	77	103	119	94	75	74	114	91	69
CATTTCGACCTCTAGG	alt_2618_fdr	279	72	350	298	103	295	83	278	122	268
TCTCTATGGAATAAAA	alt_2618_fdr	122	35	139	128	40	120	50	135	34	119
GCCATCGACAGGGGGT	alt_2618_fdr	118	45	152	124	57	110	44	116	64	116
GTCTCCATTAATGAAT	alt_2618_fdr	46	23	64	47	8	36	17	57	18	46
TCGGTCACCGGAATTA	alt_2618_fdr	147	54	180	179	57	180	43	145	64	134
GCCGTCCCGTGCATGC	alt_2618_fdr	297	81	308	315	72	269	83	250	98	263
TGATGAGAGATATGGT	alt_2618_fdr	265	73	332	280	91	249	85	282	84	284
CGACGGTCATATTTGA	alt_2618_fdr	104	39	102	64	51	93	50	61	52	69
AGAGCTTTGGGTCGTT	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTCGAGCACCCTC	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TTATCTGTTTTAGGCA	alt_2618_fdr	172	46	200	175	55	196	66	178	57	176
CCCGTCCCCCGGAGCT	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CCTCAATCCTAGTTAT	alt_2618_fdr	176	62	199	222	67	181	70	166	81	157
TGGCTGTGTTATTAAT	alt_2618_fdr	103	42	93	92	38	95	45	86	49	82
TGGGGTCGGAGTGTAC	alt_2618_fdr	257	112	280	280	94	283	94	254	90	261
CCGTCTGTACACGCGA	alt_2618_fdr	186	67	219	223	64	200	54	162	51	155
TGGTTTCAGGCACGAT	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CCTTGACCAGGGCAGG	alt_2618_fdr	116	36	163	138	41	112	49	97	35	98
TTCGATTATCGGATCG	alt_2618_fdr	41	20	70	43	13	47	14	26	22	46
TTTAGGGGTACCTGCG	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CCAACGTGCAGGTGCT	alt_2618_fdr	49	19	55	45	12	46	21	43	15	35
ATCGGTATGCGAGGAT	alt_2618_fdr	124	26	133	120	28	108	29	103	44	95
ACGGATGGGACCTGAA	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
GTAGAACATCAGCATA	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
AATCCGGACTTGGCAA	alt_2618_fdr	78	26	78	75	26	61	28	63	15	71
TGGTATGGTACTACCC	alt_2618_fdr	45	24	57	36	18	39	28	47	23	32
AGTTAGCTTAGTGGCG	alt_2618_fdr	276	104	288	281	94	291	79	274	97	227
TTCGTGTCAATGGGAT	alt_2618_fdr	464	163	629	483	178	503	198	452	191	433
ACCCCAGTGCAGGTGT	alt_2618_fdr	70	18	59	65	15	63	39	70	25	76
TTATAATCCTTTAAAT	alt_2618_fdr	41	25	72	59	17	36	23	44	15	54
TCACTCAGGATTCCAG	alt_2618_fdr	17	7	21	21	7	17	8	24	3	18
CGTTGTTCAATATGTG	alt_2618_fdr	105	34	101	116	30	88	27	110	25	86
GCCAGGAGTTTTACAG	alt_2618_fdr	89	31	109	92	26	121	23	100	28	91
ATGGTATACGATAGTG	alt_2618_fdr	459	168	581	497	129	455	163	428	152	415
TGTGCCGTCCCTGGAT	alt_2618_fdr	25	12	37	29	5	20	6	31	15	34
ATCGGTGATATTATGG	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CCTCACTATCTGGTTC	alt_2618_fdr	25	9	20	36	19	16	18	22	17	19
AAGGTCGGGCATACTA	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TCTTATGATCAACACC	alt_2618_fdr	8	0	12	13	7	13	2	8	1	16
CTCGTGAGATTCCGAG	alt_2618_fdr	185	53	222	171	68	131	84	159	57	152
AGGCATGTTGCGATGT	alt_2618_fdr	86	17	103	73	23	96	21	87	22	84
GAACGGGCACACTATC	alt_2618_fdr	49	14	84	66	13	48	13	50	17	48
CCGGGGTGCGACATGG	alt_2618_fdr	185	50	225	198	54	197	48	165	61	158
ACATGAACTGCTTGTT	alt_2618_fdr	33	9	26	36	7	34	7	35	12	41
ATGCTTTTTGTTTAAA	alt_2618_fdr	150	41	188	164	50	127	38	144	62	146
ATCGACGGAGACTTTC	alt_2618_fdr	148	47	200	171	44	146	31	170	49	146
TTTAATTGTTCTCAAG	alt_2618_fdr	103	34	173	124	40	95	36	119	29	106
CCATTACCCTGTGCTA	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTGGTCGCTTGG	alt_2618_fdr	0	0	1	0	0	1	0	0	0	1
GTATTATATTTACGCA	alt_2618_fdr	116	34	136	139	50	108	35	107	39	112
GGGACTCTACTTTTGT	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TGAAGTCGCTGGGGTT	alt_2618_fdr	45	14	52	45	25	35	14	40	6	27
CCCCAACGACGCTAGC	alt_2618_fdr	724	155	803	771	202	625	194	669	172	635
CGAGCTCGTGATTCTA	alt_2618_fdr	133	35	211	171	57	167	41	127	49	135
TATCTCACGGGAACGG	alt_2618_fdr	497	112	643	474	144	472	139	462	138	466
TTTTTATTTGCCTGCA	alt_2618_fdr	195	54	262	220	42	192	54	188	56	159
TTATACTATCACGAGG	alt_2618_fdr	612	178	769	609	157	621	167	577	176	510
ATGGTTTACTGTTCGT	alt_2618_fdr	14	6	24	20	2	18	10	15	16	21
TTGGCGTCGCGTCGTG	alt_2618_fdr	290	94	339	257	94	244	96	234	104	248
AAACCTTAGTTTTACC	alt_2618_fdr	199	59	224	192	56	197	50	182	58	164
ATGACTTAGAGTTTTT	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTCAAACGGAATG	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGTGATATTATGG	alt_2618_fdr	671	191	821	704	223	627	181	627	193	579
GAGTTACAGGGTCGGA	alt_2618_fdr	95	35	130	115	25	99	35	98	35	85
TGGCGTATGCTATTGT	alt_2618_fdr	85	15	100	64	20	69	22	58	23	63
ATGGCATCGCCCGCCA	alt_2618_fdr	0	0	0	0	0	0	0	0	0	0
CACGGGCTCCGGTAGT	alt_1284_reverse	22	45	48	38	46	43	58	43	54	39
TTCAAGCCAAAACAGT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCGGTGCGCATTT	alt_1284_reverse	62	83	65	55	84	56	74	57	87	67
CCGGGCTTTGTTGGTA	alt_1284_reverse	36	70	55	57	90	71	84	44	92	45
TTCCGATAAAACTTGG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GCTCGTGGCCCGAACC	alt_1284_reverse	11	11	7	9	14	7	14	15	15	11
AGCAGAAAGTAAATTG	alt_1284_reverse	14	8	11	22	7	5	14	4	9	11
TTTTCTTTCTGTTTTT	alt_1284_reverse	41	25	35	31	42	22	22	28	26	35
CGATTATTTAGGCCAT	alt_1284_reverse	20	29	32	19	27	25	28	15	24	16
TTATGCATCTCCGGTC	alt_1284_reverse	39	40	46	37	37	18	33	38	32	37
GCCATTCCTCCTGAAG	alt_1284_reverse	48	66	58	62	47	63	53	44	61	36
TCCATCATGCCGAGTG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TCTAATCAAATATGAG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TTCTACCGGCCCAGTG	alt_1284_reverse	1	3	4	3	8	1	4	2	3	3
CCCAACCCAAGTTCGA	alt_1284_reverse	29	45	52	36	59	33	36	26	48	37
CGCAGGATTCATGCAT	alt_1284_reverse	38	43	52	39	57	29	49	42	60	43
ATGTCCGTATAGTCCC	alt_1284_reverse	2	7	3	1	6	7	10	4	13	3
TCACATGTGCGAACTC	alt_1284_reverse	129	137	160	129	161	127	156	126	157	124
AGTGATGTACAGCCGA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TTCAGCGTTCATAAAA	alt_1284_reverse	5	14	18	11	12	8	8	9	10	14
CTCGATCATTGGATCA	alt_1284_reverse	3	50	11	12	32	4	33	15	29	11
GGAGATTTAAATCGTA	alt_1284_reverse	20	8	21	12	20	8	16	14	14	13
AAGTTCCGATAGCACT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CGCAAGCTAAGTACAG	alt_1284_reverse	22	12	17	9	19	11	20	16	27	14
GTCACTTCCAAACCGA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TACAATTGGACGTGAA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCACAATCTTCAG	alt_1284_reverse	10	9	5	10	4	3	3	10	15	4
GTGCCTTCCTACTGAG	alt_1284_reverse	16	23	25	17	27	17	17	18	23	21
GTATGTGTTGTTAAGA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TTGATAGAATGGAATC	alt_1284_reverse	21	29	41	23	34	36	34	27	35	24
TTTGTAATCTTGTTCT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTGTACTTGATTA	alt_1284_reverse	5	3	7	2	10	2	4	3	4	3
TGGCATCTCCTATCTG	alt_1284_reverse	5	8	3	2	8	6	9	7	14	2
TCTAGCCATCCCCCGG	alt_1284_reverse	5	18	6	4	19	10	16	7	19	4
TTCGCTTCTGGGGTGC	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
ACGCGGCATTGCCGGC	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CCCAGCTCTTATTGAT	alt_1284_reverse	51	82	60	41	65	61	60	44	78	34
AGTAATCCTGTTGGGA	alt_1284_reverse	3	4	6	4	1	5	2	1	5	2
ACTGCTAGTTTTGATG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CCCCGAGTCGATTAGC	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TAATATGTGATTCAGG	alt_1284_reverse	53	56	57	60	61	64	81	52	81	46
AATTCTATTTGCAATG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GAATGGGCCTAGCTCA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
ATAAGTGGGTCTGGCA	alt_1284_reverse	8	6	10	9	8	5	9	7	11	10
TTGTACTACCCTCTCC	alt_1284_reverse	24	55	32	26	32	28	52	40	51	26
GTCTATGGTAATAATT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
AGGAAACATGGCTGTG	alt_1284_reverse	15	16	18	13	22	15	21	22	30	16
CGCCTACTTAAAGCCG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTCTAGTGGCTC	alt_1284_reverse	34	41	44	43	39	34	45	33	53	30
AGCATTTTGTCCCACC	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGTAGACTTTTTG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CCTGAATAAAGCTATG	alt_1284_reverse	36	43	31	39	41	33	54	44	42	37
TTCTCGAGTGTGCCCG	alt_1284_reverse	31	22	35	39	47	35	46	21	42	28
CATGCATACGACATGT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TAAGAAGTCCGTTATT	alt_1284_reverse	3	8	10	5	6	10	15	11	11	10
ATCGGCCTGTGCTATG	alt_1284_reverse	11	24	24	18	22	20	22	13	21	21
CGAACAATATGACCAA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CTATTCGACGTCCTGT	alt_1284_reverse	47	89	67	54	65	55	69	69	96	57
ATCTACCTATTCTCTT	alt_1284_reverse	46	41	55	40	62	35	76	47	51	26
TCCTTAACAGACGATG	alt_1284_reverse	11	15	18	18	25	8	19	9	23	21
TCGGCTCGACTTGCAT	alt_1284_reverse	54	61	56	53	76	50	87	59	71	35
GTTAGAGGCGCTACAC	alt_1284_reverse	9	5	6	5	12	6	6	2	2	3
ATGTCCGCATCTAGTA	alt_1284_reverse	25	17	30	22	30	21	35	24	29	16
TCTGTGCTCGATGTGG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GGACTCTTGCAAGCTG	alt_1284_reverse	21	40	46	32	29	38	35	30	58	21
CTGGCCTGTTGTCTTC	alt_1284_reverse	4	1	6	6	4	1	1	11	1	5
GTCTAGCATGTCTGGT	alt_1284_reverse	5	15	9	13	15	10	9	10	6	6
TGGCTGGGCCAGCAGG	alt_1284_reverse	22	5	21	15	20	13	23	18	11	12
AGATCTTTGTATATCC	alt_1284_reverse	3	3	4	2	4	1	4	4	2	3
TAAGACTTACCTGGGA	alt_1284_reverse	0	24	0	0	16	0	11	2	16	0
CTGTAGATCTAGACTC	alt_1284_reverse	1	4	3	3	5	1	4	5	4	5
TCTTTGTTGTTGATTT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GCCTCTGGACTGATCG	alt_1284_reverse	15	15	16	7	17	8	20	12	12	9
CTCCTTATCAAGACAA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTTCTACACATGT	alt_1284_reverse	8	4	12	8	3	10	14	4	16	8
TGGATCTGGGTGCGAG	alt_1284_reverse	8	15	11	13	14	11	17	10	17	10
TTTGTCGTTAAACCGG	alt_1284_reverse	56	72	66	44	58	53	90	49	68	46
AATACCATGCCAATAT	alt_1284_reverse	18	22	20	16	29	22	26	14	33	16
CTAGTCGCCTGCCCAG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
ATTCAGCGTGTAACTC	alt_1284_reverse	10	17	7	10	10	11	2	7	13	10
CGAACTCGCCTCCTGC	alt_1284_reverse	14	7	8	5	10	3	7	9	11	10
AAGCTGATCCTTATAT	alt_1284_reverse	16	26	28	28	19	12	29	14	22	8
CTGCGTCTGTCTTGCT	alt_1284_reverse	17	27	13	12	13	10	21	14	18	7
CAGTTGGGAACATCTG	alt_1284_reverse	11	15	11	18	10	8	18	9	20	3
GACCTCTCTGTATCAG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TGTCTGTGTAACGCTT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
ACCCTCGGATGTCTGA	alt_1284_reverse	11	9	20	16	25	13	22	15	9	12
CCCTCCATTCCGTGAG	alt_1284_reverse	113	125	101	94	110	93	108	83	136	80
AAGCTTAGTGGGGTAT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
ATCTTGCAGAGTCAAC	alt_1284_reverse	32	37	19	29	35	23	30	19	31	26
ATAAGGTGGATAGCCT	alt_1284_reverse	29	26	19	21	35	15	31	35	29	20
TCAATGTATCTTGTGA	alt_1284_reverse	54	76	68	66	51	50	85	47	79	59
GACATGAGCGAGGCCA	alt_1284_reverse	46	34	45	40	37	56	49	49	52	32
GCTTGGCGGTGCAGCC	alt_1284_reverse	2	1	3	2	1	0	5	4	1	1
ATTCGTCATCTTCCAT	alt_1284_reverse	15	23	20	24	24	13	17	17	22	18
ATTAAAGAAATTTTAG	alt_1284_reverse	7	4	4	1	3	5	6	1	1	3
CTTTGGAAGCCCGGAT	alt_1284_reverse	9	13	7	5	6	5	8	7	7	7
GGGTTAGTGTCTGTAT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGATTTCGCGCCC	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TGTGTCTAGGGGTGAT	alt_1284_reverse	47	55	65	65	63	56	58	38	65	50
ATTGGGCTGTCTCCGA	alt_1284_reverse	29	46	40	32	36	40	58	46	46	33
TGGACGTCCTTTTTAT	alt_1284_reverse	24	26	33	32	46	24	34	23	35	34
AGGTAGACTCGTCCTC	alt_1284_reverse	8	16	11	13	12	8	9	12	15	10
GGGTGGCAGTATAAGA	alt_1284_reverse	57	63	92	68	70	69	101	80	59	59
TAGATGTAGCAGATTT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CCGACGCTCCAGGGTC	alt_1284_reverse	1	1	2	2	0	0	6	1	2	1
TGGTCGCGACGAAGTT	alt_1284_reverse	67	61	78	68	90	58	77	73	74	70
TATGGGTTTACCTCAG	alt_1284_reverse	61	86	60	46	56	68	80	56	88	57
CTCTGGATCGCCGTGC	alt_1284_reverse	4	17	11	1	20	5	16	4	20	2
GATCTCCTGCCTTTTG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CTTCAGACCTTGCATA	alt_1284_reverse	16	26	19	24	21	24	16	16	27	16
ATATGTGGTATCCTCT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GGCTACCGCAACTACT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CGATCCAAATGTACCT	alt_1284_reverse	3	16	5	5	23	2	16	4	19	6
GTATGCGTTCAGTGCG	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
CGAATAGAAATAATTC	alt_1284_reverse	25	24	25	21	23	20	21	31	36	25
TCTCTTGGGTGAAGAT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GCATGCGTTCCCGAGG	alt_1284_reverse	131	135	130	132	152	103	149	127	160	107
TTGAGCTAAAGTCTTC	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TAGCCTAGGATATTGT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GACGGCCGCTTAGTTG	alt_1284_reverse	8	13	6	12	8	8	14	9	10	5
ATTTCTGTTCACGAAG	alt_1284_reverse	47	44	46	23	48	26	48	46	56	38
CGTCGCCTTATAGGTT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GAGCACATGGGTCAAA	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTATTTCCATATGGAC	alt_1284_reverse	29	35	37	32	39	38	37	31	54	31
GCGTTACCTGCCGAAT	alt_1284_reverse	3	4	2	10	0	2	7	1	4	4
ATCTTTCGTGTTACAT	alt_1284_reverse	0	0	0	0	0	0	0	0	0	0
TAGACTTGAATGTGTT	alt_2099_fdr	18	30	20	8	11	11	16	14	16	21
TCATTCAATGGGTACC	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
CATGATGGCTTTTTTA	alt_2099_fdr	4	3	2	2	3	0	1	1	5	2
TCACGTTCGCAGCATA	alt_2099_fdr	23	28	27	17	18	16	34	21	22	15
TGAATTTATCTAGAAC	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
CCGAACAACGTTTCGA	alt_2099_fdr	10	10	6	4	24	5	22	8	19	4
CGGATCTGGGATCCAG	alt_2099_fdr	15	34	18	27	18	23	25	23	29	10
CCATCGCCTAGACCAC	alt_2099_fdr	7	8	9	4	17	5	6	1	9	7
CACTTCCTACCATTGT	alt_2099_fdr	39	65	46	36	46	29	75	37	57	34
CAGGACAACCAATGGG	alt_2099_fdr	31	81	49	43	77	34	77	35	89	29
TATCGATGTTCCGACG	alt_2099_fdr	11	13	10	5	12	8	8	7	8	11
TGATGATGAGGCTGCT	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
GTAGGGGCTCGCAGTT	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
TACTACATAGTCTGCG	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
CTACCCTCTAGATGTA	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
TGCGAACGGGTCCCTT	alt_2099_fdr	19	32	28	17	23	22	23	15	31	23
ACGCACGGGCCGATAT	alt_2099_fdr	11	22	13	13	19	12	21	8	29	9
GCTGGGCGGAAGGGTG	alt_2099_fdr	60	89	82	76	83	62	88	75	99	72
GCTTCAGAGGTATGTT	alt_2099_fdr	91	118	91	69	106	63	118	77	110	74
TGAGGTGAGGGTCAGC	alt_2099_fdr	110	66	114	72	124	47	80	107	72	92
AGATCTGGGCTTGTAC	alt_2099_fdr	0	5	0	1	1	0	0	1	2	1
TAAAGTGGCTCATGCG	alt_2099_fdr	18	24	11	20	28	9	23	7	21	15
TCGGTTCTAATTGACT	alt_2099_fdr	47	69	68	48	78	33	78	35	93	41
TATCAAATGCGACGAA	alt_2099_fdr	13	18	21	16	19	18	16	13	20	26
TTATTTCTAACCGTTG	alt_2099_fdr	34	66	47	37	31	32	46	20	62	32
TGCACGCATGTTAATT	alt_2099_fdr	28	38	32	31	51	28	47	28	50	21
TAACGTTATGGTCTCT	alt_2099_fdr	20	31	35	16	30	21	31	23	26	24
AAGTCCACTCATCAGG	alt_2099_fdr	14	20	11	15	24	10	23	14	17	8
TCGCTTGCGCCACCTA	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
ACGGAGTATTCTCGTT	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
AGTTCATACATCGGGT	alt_2099_fdr	26	30	28	32	30	17	29	26	21	21
GGACTTCGCAGACTGG	alt_2099_fdr	37	44	60	37	51	32	45	32	57	34
CCCATTGGTCTAGTCC	alt_2099_fdr	15	34	14	18	29	12	38	21	48	22
CTTCTTGCTGACCCCC	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
GTGCATAACATTGACT	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGACTCCCCTTTT	alt_2099_fdr	2	12	6	0	11	0	18	3	14	2
TTGTTTCACGCTTGCG	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
TCGATGGCCTTCCCAC	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
TTTGTACTCTAGGGTT	alt_2099_fdr	14	28	28	14	17	21	39	20	35	20
CCTCACGATCTTGTTA	alt_2099_fdr	19	26	18	8	11	7	16	14	22	13
ATCCGATCGCGTCCTC	alt_2099_fdr	20	27	19	14	28	14	16	9	20	30
ATCCTTACGGCCCATT	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
CAACTTCTCTGTGGCT	alt_2099_fdr	15	30	25	24	43	25	52	18	25	18
TAGACGTCGTGTGTTT	alt_2099_fdr	54	114	74	45	100	44	103	50	114	51
ATTAAACTTGCGCTTG	alt_2099_fdr	0	0	0	0	0	0	0	0	0	0
TACCTTTTTAAGTCCC	alt_1834_RC	47	39	49	40	34	40	36	34	45	29
TATACAGAGCTCGACT	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
TGAATACTGAGTATTG	alt_1834_RC	7	11	11	10	13	12	9	6	23	12
CACTCCGGCTTTCTTT	alt_1834_RC	12	10	10	12	15	8	19	14	17	8
CAGCAGAAATAGAATA	alt_1834_RC	12	14	24	23	29	15	28	15	34	24
CAATTTCATCGAGCAG	alt_1834_RC	46	45	52	38	31	38	53	21	40	27
AAAGCGACTGTAGCAG	alt_1834_RC	6	5	5	3	2	6	4	0	3	4
TACTCACGGATGTTCG	alt_1834_RC	11	25	12	14	14	11	12	15	22	4
ACTCTCTGCTCAGACG	alt_1834_RC	61	87	74	82	105	75	88	69	73	61
CTATACTCTGTCTGGC	alt_1834_RC	12	16	9	12	16	11	23	13	13	13
CGTCCACATTTTATCC	alt_1834_RC	27	40	37	33	31	24	32	27	34	27
CTATCTTGGTCCGATC	alt_1834_RC	39	35	35	36	50	27	36	38	41	28
TGAAGAAATGCGTACT	alt_1834_RC	23	22	37	28	21	23	30	19	26	19
ACCTTCGTGTAAGTTT	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
GCTTTAGTCGTCCTGC	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
CACTGTGCGCCCCTAA	alt_1834_RC	51	64	60	50	54	44	52	50	76	47
GAGTCTTTGGGTGGTA	alt_1834_RC	12	19	28	18	31	12	28	13	23	25
GATTAGGGTCCCCTAA	alt_1834_RC	21	15	20	18	11	17	19	15	22	14
AAACACTATGGGTGTC	alt_1834_RC	32	25	40	34	28	20	38	27	50	23
CAGTGCCTAATTCGGT	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
CTTGTTCTCTTGGCCC	alt_1834_RC	80	76	92	72	60	73	85	92	97	76
GAAATCGCTGAAACGG	alt_1834_RC	69	50	93	70	65	57	62	52	62	79
GGGTTATAGCTGGCGT	alt_1834_RC	10	12	10	7	12	15	6	9	8	8
CGAAAGCAGCAAGTAA	alt_1834_RC	6	8	10	8	15	9	9	8	15	11
AGCCGCATGCTCTTTC	alt_1834_RC	20	17	14	10	17	15	16	10	22	11
ACTGAATAGTGGTGGG	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
CCGCAGAGAGTCGCCA	alt_1834_RC	25	29	27	25	21	29	9	18	23	26
GTACGTTCATATACAT	alt_1834_RC	16	11	19	24	24	15	17	16	19	20
ATAGTCCTAGCTCGCT	alt_1834_RC	55	69	94	72	67	79	91	58	81	63
TATTCAGTCTTGAGAC	alt_1834_RC	18	21	31	28	23	25	36	27	22	21
AATTTGATGCCCTCTG	alt_1834_RC	5	5	5	1	6	2	7	0	3	8
CGGGTTTCGTGTGTTC	alt_1834_RC	65	79	78	63	77	70	86	73	90	68
GAGCTAAATTAAAGCC	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
TTGGTAACTGCGCATC	alt_1834_RC	2	2	1	5	4	2	2	4	4	2
GGGTGGCATCTTTTCA	alt_1834_RC	5	9	17	11	9	7	3	9	8	8
TATCGCCTGCGTGCAC	alt_1834_RC	91	116	132	113	131	116	146	75	154	79
GTTAAGTCCCTTGTCA	alt_1834_RC	24	23	27	23	32	19	36	12	33	24
TTAGTAACCTGGCGCT	alt_1834_RC	6	7	7	12	6	6	9	4	10	11
AGACAGCTTCTTAATA	alt_1834_RC	35	40	51	46	62	40	51	37	56	32
TTATATTCTCACATTC	alt_1834_RC	172	226	195	171	200	162	209	167	217	178
ACAGAAACGGACCAAA	alt_1834_RC	9	10	16	15	17	10	14	7	12	11
CCGTCCGAGGCCGCCG	alt_1834_RC	12	49	26	16	54	10	72	10	42	15
GAAGACATTTATTGGT	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
GTGATCCTTCGAAGGG	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
CGTTCCGTACCATATT	alt_1834_RC	103	145	144	107	158	103	178	87	171	107
AAGCACCTAATAATCT	alt_1834_RC	46	37	53	46	34	43	37	45	40	47
TTATTCTGACGTACAG	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
ATAATGCTTAGTTGGT	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
ACATAGTGCTTGTTGG	alt_1834_RC	52	92	91	66	86	47	66	77	94	62
ACGTGAACTAATTGTT	alt_1834_RC	55	50	70	52	77	34	57	37	46	29
ACGGGGCGGGATGCGT	alt_1834_RC	69	65	87	62	65	80	68	60	67	55
ACAAAGTGTTTCTATC	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
GTCTTTGTGCTTGCTG	alt_1834_RC	0	5	3	1	2	3	3	0	3	7
CAATGGATCGTATCTT	alt_1834_RC	163	127	189	164	165	154	152	169	155	137
TGCTTTTTAATAGCAT	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
TGTGCTTGGCTGCTCG	alt_1834_RC	11	10	20	19	12	11	19	19	11	18
ATATTGCACCCCCCAG	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
TGAGCTTATGACTGTG	alt_1834_RC	24	42	30	25	26	17	36	16	39	21
AACAATAAATTCTTGC	alt_1834_RC	42	21	30	28	18	22	26	20	21	24
CCTATTTTTCCTTTGA	alt_1834_RC	30	23	30	24	33	17	34	25	38	24
GTCAATGTCGTCCAGC	alt_1834_RC	53	47	92	68	75	56	66	60	66	61
TGAGGAACATGGAATC	alt_1834_RC	17	8	11	16	9	7	11	18	11	20
TTTGCCAAACAATCCT	alt_1834_RC	13	20	13	14	24	6	17	11	21	15
TCGCATCATTCCTAGG	alt_1834_RC	11	15	13	9	16	10	9	6	16	11
ATCTTCACTTGCATTG	alt_1834_RC	31	36	45	32	32	18	27	34	38	26
ACAGCCTCCTGAGTGC	alt_1834_RC	135	185	115	107	214	117	205	120	199	99
TCCACGTGGCGGTGTA	alt_1834_RC	72	67	88	94	87	83	74	64	99	85
CGTCGGTATTTTTACA	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
GTACCACCTTGTAGAT	alt_1834_RC	126	156	134	113	166	119	165	92	161	117
GCTCATGCGCTGAAGA	alt_1834_RC	55	37	69	54	38	40	49	41	41	42
GCACACAGGGCGAGGA	alt_1834_RC	53	35	33	22	40	31	30	33	39	41
TCAAGTTTGTGGCTGA	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
CATTTTAGTTCTTTAC	alt_1834_RC	32	35	40	27	34	34	32	36	24	33
TCTTGTCTAGAGCGCG	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
ACCAAAGGCGCTTCTC	alt_1834_RC	21	31	32	40	30	14	24	19	25	28
ATCATCCTTAGAAATG	alt_1834_RC	1	0	1	3	3	1	0	1	0	0
CTCATGTATCGTATGG	alt_1834_RC	30	46	35	31	42	35	45	28	45	31
GCCTGCCGGCTTGGTA	alt_1834_RC	95	98	102	99	103	79	90	70	99	66
GACACCCGACAATTCC	alt_1834_RC	14	11	22	23	24	18	31	24	22	21
TTCGATTACAGTGTAC	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
GTCTCGCGACTTTAGA	alt_1834_RC	8	16	8	6	3	8	9	4	4	4
TAACTTCCCGAATGCT	alt_1834_RC	16	15	16	16	14	10	16	19	16	9
AGAATCTAGGGTTATA	alt_1834_RC	7	8	11	8	10	7	6	13	11	4
TGACTTCAATTCTGGG	alt_1834_RC	36	23	37	33	30	20	36	22	35	23
TACTATCAGTATTCCT	alt_1834_RC	9	17	10	16	14	12	13	16	22	4
GCCGGCATCTGCTTTC	alt_1834_RC	0	0	0	0	0	0	0	0	0	0
TCATTTTAATTTTCTC	ref_6093_new	17	17	8	12	11	8	21	5	10	16
CTTCGTCCGTAGATAA	ref_6093_new	88	142	100	99	150	105	165	78	171	75
CGGCATGCGCAAATGT	ref_6093_new	17	28	26	20	28	18	26	20	21	21
AAGGTAGAGGAAAAGC	ref_6093_new	0	0	0	0	0	0	0	0	0	0
GTCGATTGTAGTTGGT	ref_6093_new	12	15	5	10	10	11	20	7	12	9
ACACATATTAGGCAGC	ref_6093_new	2	8	2	6	10	5	10	4	4	3
GTATATCTAACGGACC	ref_6093_new	0	0	0	0	0	0	0	0	0	0
TGTGCAAATCAGCGAT	ref_6093_new	0	0	0	0	0	0	0	0	0	0
GAGCCGAGGGTGTGGA	ref_6093_new	2	11	3	4	5	3	18	7	13	7
CCTATCCTTGGTCCTG	ref_6093_new	8	11	12	13	24	11	15	7	17	11
TGGGGCAGTCGAGGCG	ref_6093_new	13	18	18	11	17	11	16	8	22	10
TGGGACGGTGCTGGTG	ref_6093_new	0	0	0	0	0	0	0	0	0	0
TCACACCCGCACATCA	ref_6093_new	6	10	6	0	6	2	9	9	5	1
CAAGCTCCTTTCGTGG	ref_6093_new	48	107	68	50	122	42	146	47	105	40
TAAGATTCAGGCCCCA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
ACAGCAAAAATCCTAG	ref_6093_new	13	21	16	14	11	8	13	8	22	6
GACGAAAATACTCAAT	ref_6093_new	9	7	5	5	4	4	2	1	11	2
TCAACCGGGCATCGCA	ref_6093_new	43	85	60	37	80	43	86	37	75	40
ATCTGACATCAGGCTC	ref_6093_new	56	114	85	72	113	50	105	58	109	45
TGTAGTTTTAAGTGTT	ref_6093_new	6	6	11	7	9	9	13	3	11	7
CTTTTTGAAGATAGTC	ref_6093_new	99	178	111	105	202	113	193	107	208	103
GCTTTTCCAACGAATA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
CGTAATTCTGAGCCTT	ref_6093_new	59	130	93	58	105	80	98	65	121	58
ACTCAGAGGACTCTGT	ref_6093_new	22	64	36	27	67	19	79	39	79	23
GTAAGAGCGTTCAAAG	ref_6093_new	23	41	27	17	42	34	44	31	27	20
ACTGGCGGGATAACGT	ref_6093_new	1	2	2	1	3	3	1	2	6	3
AGAACAGTCGGGTTTC	ref_6093_new	27	45	36	36	47	47	71	35	69	33
ATTAGCCAGGCATATA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
AAACAGCGCTAATATC	ref_6093_new	0	0	0	0	0	0	0	0	0	0
GAGTCCGCGTGTTTTG	ref_6093_new	21	25	22	18	31	22	42	14	34	28
GGTCAAAGTCGCGCTT	ref_6093_new	31	76	59	30	81	38	69	32	84	44
TCTCGGTGCTCGGGGA	ref_6093_new	10	14	16	21	23	11	26	9	28	10
CGTTGTTAGTTCAGAA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
ACGCTTTGTTGATGTG	ref_6093_new	57	108	79	56	121	70	122	44	126	53
TCTCGATCCGGAACGC	ref_6093_new	7	19	14	9	20	10	27	10	16	10
ATATTTCGATTATTAG	ref_6093_new	3	7	5	4	9	5	11	2	11	3
TCCCCCAGGCGTCACG	ref_6093_new	48	74	59	40	52	45	56	37	55	48
TTTGTCTGAGCATCGT	ref_6093_new	21	51	38	20	49	29	47	28	48	16
TTGTTACGAGATCTAG	ref_6093_new	15	16	17	15	14	10	20	9	23	12
TCCGCCTAGAGAATTG	ref_6093_new	37	77	62	53	79	50	96	33	86	49
TGAACAGTTCCGACCC	ref_6093_new	32	47	43	28	51	35	56	29	49	13
GAATAAACCCTTTACG	ref_6093_new	0	0	0	0	0	0	0	0	0	0
ACCCTACCTTTTTCTC	ref_6093_new	21	46	39	26	46	23	45	10	39	21
CTGATCATATAGCGTT	ref_6093_new	30	30	16	22	28	8	25	18	47	21
TTCTGTCCAAAGCTTC	ref_6093_new	5	15	3	4	8	5	12	5	9	1
TCTCCCACTGTTGGGG	ref_6093_new	50	81	46	52	91	45	95	77	102	39
TTGGCTTACTACCAAA	ref_6093_new	42	71	47	40	78	29	66	37	82	51
CACACAGTAACAGACG	ref_6093_new	0	0	0	0	0	0	0	0	0	0
AGGCTCGGACTTTTTG	ref_6093_new	35	49	27	35	36	20	42	28	41	19
TATGGAATTCCCTGCT	ref_6093_new	18	25	24	20	32	19	39	14	36	23
ATCGCAGCATTTGCTC	ref_6093_new	0	0	0	0	0	0	0	0	0	0
TGAACAGTTCCGCCCC	ref_6093_new	0	0	0	0	0	0	0	0	0	0
ACTCGGACAAAGGTAC	ref_6093_new	0	0	0	0	0	0	0	0	0	0
CTCTCTGGACTGGGCT	ref_6093_new	3	6	6	2	7	5	2	4	6	2
GGCCCCTTCGTGGATA	ref_6093_new	130	207	153	115	226	103	217	103	253	92
AATCGGAAACGTCAGG	ref_6093_new	41	63	38	31	79	33	84	42	68	33
ATTTACGTGGTTTACT	ref_6093_new	30	50	36	27	44	23	61	31	47	24
TTCCAATAATCTTATC	ref_6093_new	0	0	0	0	0	0	0	0	0	0
GGTCTCGCGACTTGCA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
ACGCTTGGTCTCGGCC	ref_6093_new	62	89	61	54	89	53	94	34	85	36
CTCTTCTGGTATCGCG	ref_6093_new	10	20	11	13	26	10	22	16	25	10
CATAATCCGCGATGGT	ref_6093_new	36	68	54	41	53	31	50	36	58	31
GTCACCAGGATCCGGA	ref_6093_new	7	8	7	5	14	6	15	5	2	3
CACATACCCGGCTAGC	ref_6093_new	17	57	28	25	48	33	36	25	43	28
AGTCATACGGAGGATA	ref_6093_new	72	129	97	62	136	81	124	69	135	72
ATCTTGATTAAGTTCA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
ATGGTTTGTTGGTCCA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
CCTCGTGGCCTTCCTA	ref_6093_new	32	51	51	51	62	46	71	37	69	43
CCGGGTGGTCTATTTT	ref_6093_new	5	15	5	2	21	4	16	3	21	1
TTTTCATTCGCGTACA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
TCCGCTTCATCATGGT	ref_6093_new	26	24	26	25	26	34	24	22	19	23
CACGTTTCGTTTAACG	ref_6093_new	0	0	0	0	0	0	0	0	0	0
TTGAATGTGTCTCCTC	ref_6093_new	50	110	76	58	90	69	86	61	95	57
GTTTAGGACGTGCGGA	ref_6093_new	64	117	67	72	117	56	102	62	109	39
CGCATGTCACACTTTA	ref_6093_new	15	27	19	18	23	13	27	8	25	3
GGCTTAAGTTGTACTT	ref_6093_new	0	0	0	0	0	0	0	0	0	0
CCACTCTGGCTCCACG	ref_6093_new	29	58	39	28	52	35	66	28	72	30
CACAGCCCGTCCCTTG	ref_6093_new	36	40	46	30	47	28	53	39	45	29
AGAGGTGCGCATGGTA	ref_6093_new	0	0	0	0	0	0	0	0	0	0
GTACAACAGGCTTTAG	ref_6093_new	42	70	33	33	85	37	54	39	50	45
ATTTAAGATATAACGC	ref_6093_new	73	85	61	69	96	80	83	65	113	63
GCTTGCTCCTTATCAG	ref_6093_new	51	79	61	56	69	39	92	42	88	34
GGCTCAAGGGATAGAA	ref_6093_new	30	48	36	35	51	32	60	33	43	25
ACTTTAGCAAGTGTTC	ref_6093_new	27	45	26	35	59	43	50	34	71	30
GCTCAACATGTTACGG	ref_6093_new	19	41	26	18	46	18	37	20	37	18
ATCTTTATGACTCAGT	ref_6093_new	0	0	0	0	0	0	0	0	0	0
AATGGTATGCCATCAG	ref_6093_new	0	0	0	0	0	0	0	0	0	0
GCCGTTCTTACCAGTC	ref_6093_new	18	79	23	23	71	19	72	20	72	28
TTCGGTTAATTCGTCT	ref_6093_new	10	25	21	20	24	10	21	10	18	14
CCGATCCATTGATGCT	ref_6093_new	5	18	2	10	34	4	38	8	37	8
GAAGTTATGAGGTGAC	ref_6093_new	20	29	19	20	49	27	45	29	38	23
GCCGTATTTGCCTGGG	ref_6093_new	9	13	13	12	20	13	20	7	21	4
GTTAGGAGTTTCGTTT	ref_6093_new	12	19	24	27	27	10	26	10	20	8
GTAGGAAAATGCGACA	ref_6093_new	31	70	66	43	87	49	94	38	69	34
TGATCTACTCGTCCTG	ref_6093_new	76	129	99	73	130	81	120	65	146	63
TTCAGGTGCAGTCGCC	ref_6093_new	6	16	8	5	15	1	17	8	13	13
TTGCTTAATTGGCTCA	ref_6093_new	30	80	66	45	69	51	104	44	96	51
CGGATATTTGGCTTAT	ref_6093_new	13	7	14	11	23	11	14	10	21	14
GGTTTTACTAATTCAT	ref_6093_new	54	107	70	67	107	63	123	51	120	57
GCTCGCTTTATGTCCG	ref_6093_new	9	12	5	2	15	6	18	7	11	5
TGGCGATACGCCGCTG	alt_87_missing	126	105	173	170	96	131	92	132	94	129
CGTACATCTCGAATTT	alt_87_missing	70	49	95	72	59	63	55	54	57	72
GCGGGAACTGTATGAG	alt_87_missing	2	4	4	2	7	2	4	3	6	3
TGAAATGCTAACTGCC	alt_87_missing	31	19	23	24	21	22	11	23	32	34
TTCGACAAAACATTAG	alt_87_missing	70	43	81	88	42	63	49	58	53	74
TGGATTCTATTTGTGA	alt_87_missing	15	10	15	12	5	23	7	8	9	13
AGGGTTTCACGTATTC	alt_87_missing	69	59	96	63	61	84	37	85	63	69
TGTAAGCTGGCCAGTG	alt_87_missing	39	32	31	37	21	29	13	26	28	29
TAGTGAGTCCGTGAAC	alt_87_missing	22	23	22	25	28	25	23	23	19	13
TTGTCTTCTAATCGGG	alt_87_missing	0	0	0	0	0	0	0	0	0	0
CACTACAGGGCCTATA	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
CCACTTTCGCTCTACT	ref_4437_missing	9	8	2	2	3	3	9	5	8	3
TTTCTGCCTGTTTTCG	ref_4437_missing	23	26	36	26	30	20	32	12	34	25
GCCCGCATGCCCCGGT	ref_4437_missing	14	24	19	19	22	17	31	16	19	11
CCTGTATTGGGTTCAT	ref_4437_missing	7	3	4	8	12	5	11	5	8	5
CACTCGAGGTATGGCT	ref_4437_missing	26	39	59	39	41	28	49	42	35	37
ATGTATTGGTACATCC	ref_4437_missing	41	41	38	36	48	32	65	34	42	44
AAATTTACGAAATGGA	ref_4437_missing	87	83	101	75	78	82	87	70	83	68
TTCTGAACTATAGTTA	ref_4437_missing	26	31	27	20	15	24	30	21	24	17
GGTGAATCTAGGGCGT	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
CGTGTACTGGCAGAAG	ref_4437_missing	19	34	28	27	36	33	43	37	30	28
AGCCTGACCACCTTCT	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
ACTATCGATCCGTATT	ref_4437_missing	132	126	186	121	140	145	171	128	154	121
GTATATCCGCTGCTAT	ref_4437_missing	84	67	81	62	62	57	82	71	73	54
CGGGTCGTCCCGAACG	ref_4437_missing	7	17	17	7	12	12	14	11	13	18
TAGTGCTTTGGGTGGT	ref_4437_missing	8	14	16	6	15	10	14	13	13	12
TATTATCTCCTCTCAC	ref_4437_missing	28	32	41	22	30	22	20	28	22	23
TCCGTACGGACTTCTG	ref_4437_missing	58	42	70	47	34	45	47	60	55	54
TTCGGTTTCGCTCCAC	ref_4437_missing	62	59	60	50	58	52	65	56	55	49
TCCTAAGGTGCGTCAG	ref_4437_missing	26	32	33	27	37	19	29	28	48	35
ACATAGGCACTGTTGA	ref_4437_missing	34	51	48	63	36	48	49	38	31	42
GTGAGGGCCTTGCATA	ref_4437_missing	53	50	87	65	69	68	85	52	62	52
TCGAGATCATTGTGTG	ref_4437_missing	8	17	16	13	12	10	20	10	25	13
CCATCTGGGTCATAGA	ref_4437_missing	92	84	90	79	77	59	86	75	99	74
TTTCTTATTTCTACCA	ref_4437_missing	43	32	33	36	29	36	36	34	33	20
ATTAGGACCGCGATTA	ref_4437_missing	20	13	20	24	15	15	14	14	26	10
TTATGAACTTCCTGTT	ref_4437_missing	40	42	46	38	35	36	38	38	29	46
CGGCTTTGACTTGTTT	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
TTTTACGGTGCAAAAT	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
GTATTTGAATAAAACG	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
CATGTGTAGATATCGG	ref_4437_missing	6	3	5	6	2	5	5	4	7	10
GTTTGCCTAATTATTG	ref_4437_missing	25	33	34	24	25	20	29	18	49	27
CCGCCGCAACAGGATT	ref_4437_missing	23	26	32	13	25	27	31	16	29	15
TGAAGGCATGCGAGTG	ref_4437_missing	15	17	15	7	7	18	20	11	14	11
AGCGTCAACGGAACTT	ref_4437_missing	22	25	19	20	26	22	28	28	19	27
TCTATACAGTTTAGGG	ref_4437_missing	12	10	25	19	15	17	27	19	23	14
CAACCTACCTCCTTTT	ref_4437_missing	28	107	20	26	130	21	107	42	94	17
TGTATCTAGCAGGCTT	ref_4437_missing	1	2	0	0	3	4	0	2	4	2
CGCATTGGGTGGTTCG	ref_4437_missing	21	20	15	16	25	16	17	14	26	20
TAAGGTTAGCCTAGTA	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTACTCTACTCG	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
TAAGGCAGGGCCTCAG	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
ATGTTGCTTTTGACCT	ref_4437_missing	169	169	204	194	206	170	213	149	198	163
TATAGGTCTTTACCAA	ref_4437_missing	12	11	15	9	9	11	3	7	15	9
GTTAAGTTTCCGGGCT	alt_4437_missing	98	84	91	93	96	93	103	99	97	82
CTCGACTAAGAGGGTT	ref_4437_missing	43	41	39	46	41	42	52	29	61	42
CAAATCAATGAAAGAG	ref_4437_missing	46	46	56	57	48	48	49	63	58	43
ATTAAGAATCGGCTCT	ref_4437_missing	39	52	51	46	36	46	42	45	51	32
TGCTCCTCTAGGATCA	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
GCGAATTTAGCGGTGT	ref_4437_missing	3	6	5	4	6	6	6	1	3	6
TTTAATGTACCTTGGC	ref_4437_missing	13	21	9	5	20	12	15	16	13	16
CGCAATAGCCACCGTT	ref_4437_missing	91	108	113	97	115	72	125	85	105	89
TTTATAATGACGTTGT	ref_4437_missing	71	78	97	65	78	80	90	74	89	74
AAAGCGGAGTGGTGTG	ref_4437_missing	0	0	0	0	0	0	0	0	0	0
AATTTCCCCCGACGTC	ref_4437_missing	0	0	0	0	1	1	0	1	0	0
ATGACATCCACACGTC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
ACGCAGAGGCCCCAAC	alt_211_negative	8	33	20	21	31	12	36	21	36	10
ACACCTCTGCGTGTGT	alt_211_negative	20	35	17	18	51	19	42	13	46	33
AATCCCGGTTTTTGCA	alt_211_negative	1	10	4	1	7	4	9	1	11	3
AAGCTAAAGTTGGTCC	alt_211_negative	17	11	2	5	14	7	9	6	8	8
GCGTATTATTCATTAC	alt_211_negative	15	41	27	11	30	18	29	20	38	12
GACTTTCTCCAAGCTC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
GTAATCACGCAAAATT	alt_211_negative	15	34	20	20	35	17	32	7	30	19
TAGTGCGGCTGTCCTA	alt_211_negative	11	22	17	14	31	12	27	19	26	11
GGAAACTCAGCCCCGG	alt_211_negative	15	22	14	9	32	19	23	23	28	13
AGTATAGTTAGGGAAC	alt_211_negative	7	12	2	8	8	5	12	8	9	5
GCCCATTAAATTCGGT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
CCTGCAGCTACCTATC	alt_211_negative	9	20	5	9	14	14	16	6	23	8
CGATGTTACTACTAAT	alt_211_negative	19	39	19	19	31	22	38	19	29	13
CCACGCTGTATAGGTT	alt_211_negative	25	17	12	11	22	11	33	19	28	16
GTGCGTCTGTCAACTG	alt_211_negative	34	100	58	54	94	45	113	35	111	27
AAGTACTGGGGTTGAC	alt_211_negative	2	9	0	3	3	3	5	1	7	5
TAATTGTTTACCTTGG	alt_211_negative	15	28	22	16	24	17	36	11	25	8
GCAGGTTTGCAAGTCT	alt_211_negative	6	10	11	4	11	10	17	8	13	10
TTATTCCCAAACATCA	alt_211_negative	12	28	17	22	22	15	18	15	24	16
CTAGGTAATCAAGTTG	alt_211_negative	54	63	59	33	72	38	79	40	86	40
CTTCATATGTCAATCG	alt_211_negative	3	7	8	2	4	3	9	3	8	1
AAGGCTTTTCACCCTG	alt_211_negative	24	50	17	18	51	20	50	18	21	24
CATAGCTGTGTCCTTT	alt_211_negative	10	32	20	19	48	9	29	18	48	22
TTTATAGCATTCAGCT	alt_211_negative	55	102	59	47	115	60	111	48	109	59
GAGCTCTCACGTATTT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
CATCGTCGATAGCCGT	alt_211_negative	6	7	12	6	8	5	8	3	6	2
TTCAAGGTAAAGCCTA	alt_211_negative	11	24	19	17	17	20	23	17	23	11
ACCCTCAGTAGAAATG	alt_211_negative	0	0	0	0	0	0	0	0	0	0
CACAATCAGTTATGCT	alt_211_negative	41	66	41	42	68	42	79	28	83	35
ATGGTAATTCAAGGCA	alt_211_negative	0	0	0	0	0	0	0	0	0	0
GCTTTTGCCGCTGAGT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TTTTGCATCACGTCAG	alt_211_negative	14	20	13	13	18	12	11	11	17	12
CGCCAAGCACACTACA	alt_211_negative	0	0	0	0	0	0	0	0	0	0
GCTTGTCCGAGTGTTT	alt_211_negative	9	14	11	10	18	13	22	13	14	5
GATGTAGCTGTATCTG	alt_211_negative	19	23	15	18	31	16	30	22	28	15
ACTCGTAGCGTCTACT	alt_211_negative	10	24	18	11	15	14	16	18	19	14
ATTCGAAGTGGTCGGT	alt_211_negative	1	5	2	1	2	1	11	1	8	1
GGCAGTCTTAGTTCAT	alt_211_negative	23	44	36	30	51	18	45	23	40	19
CAGCATTTGATAATGA	alt_211_negative	1	2	3	0	5	1	4	0	3	1
GCATATTTTGGGATAT	alt_211_negative	5	6	11	3	7	4	8	8	4	6
GCGCATCTAGTTTACC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
ACTTTCTAGAACAGTT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TTAGACCCTGTGGCTC	alt_211_negative	64	94	87	68	126	53	99	59	104	47
TGGCAGTCGTTTATTC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
GTCTTCATCCTGCTGC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TCATTCCAGTTAGCGG	alt_211_negative	4	4	5	4	6	4	4	3	16	2
ATCTGTTTCTTCCTCT	alt_211_negative	15	34	36	23	47	27	37	15	47	22
CCGTCATGTCTTGTCA	alt_211_negative	1	6	1	1	7	2	1	2	2	2
CCTATTTGTGCCTCGT	alt_211_negative	6	21	9	10	20	4	20	7	24	4
CGATAGCACCTGTCAT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
CTGGTAACCCGATGTC	alt_211_negative	6	2	4	10	9	5	8	2	13	2
TCTTTCGCCTAGCCTG	alt_211_negative	26	66	33	37	51	32	63	25	75	29
TACGTTAACGCGGCAT	alt_211_negative	59	128	65	66	121	62	116	51	122	58
CGGATATTGGCCAGAT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TTGTGGCGATTTCCCC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TACTGCTTATTATACG	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TCCTCGTGGCACAGCA	alt_211_negative	74	107	94	69	108	55	97	75	109	54
TTTTGTGAGTGGTCCC	alt_211_negative	5	4	5	3	9	4	6	7	0	4
TGATCTAACGATCATA	alt_211_negative	12	17	18	9	15	25	15	7	17	8
TTCCACTCCGTGCTCC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TAGTGATAAAAAGCAA	alt_211_negative	39	65	39	39	63	29	63	32	78	31
GTGTGAGATCATAAAC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
AAATGTTCTTAGTAAG	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TTCCAGCGCGGACCAT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
CAGGAACGTATGAGAT	alt_211_negative	16	42	24	14	27	26	30	18	44	12
GTGATGTGAATCTCAC	alt_211_negative	7	7	5	8	8	8	27	7	20	8
TCACCGGACGCCCTAA	alt_211_negative	6	27	15	12	34	26	33	10	31	6
GATGCCTTACCACATT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TTGCGACATGGAATGT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TATTCCATATGTTTAA	alt_211_negative	5	20	13	6	12	6	14	7	14	13
GCTAGCAGATTGCGGG	alt_211_negative	15	31	31	9	43	18	38	9	32	32
GATGCCGCTCCGCAAG	alt_211_negative	46	80	41	45	66	36	66	39	66	45
TTCAAATTGGTGGTAT	alt_211_negative	4	3	7	7	4	8	8	1	8	4
ATCCGCCCTTATTTTG	alt_211_negative	0	0	0	0	0	0	0	0	0	0
TAGCATTTATCGTGGG	alt_211_negative	23	41	55	26	50	31	42	15	59	25
ATTTTTGTCTGCTAAC	alt_211_negative	12	27	20	20	32	14	35	16	34	20
TTTTCTTGTATGGTGT	alt_211_negative	4	20	8	9	18	2	5	9	12	1
TTCACGCTTAAAAATC	alt_211_negative	6	11	5	3	13	7	11	10	19	12
TGAGGGATACGCATTC	alt_211_negative	39	56	42	40	55	44	56	29	57	26
CACGCTCTGACGAAAC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
ATGCTGCTCAAAATCC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
ATTTTAGATTCGGGAC	alt_211_negative	9	33	23	13	31	27	18	21	41	12
GCTAACTCGCAATTAC	alt_211_negative	25	52	40	35	58	26	56	23	58	29
TGTCTAGTATGCCGGT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
CTCCAAACTACATTAT	alt_211_negative	4	26	14	11	29	9	23	8	27	8
TATTGCAGAGTTCGAT	alt_211_negative	14	42	23	28	47	30	54	32	52	30
CTGGTGTTCTCCTGTG	alt_211_negative	20	23	19	12	27	18	30	16	38	12
CTGACTTGGATTATCC	alt_211_negative	9	28	18	23	20	7	20	11	45	7
GATAAAACTGACATCT	alt_211_negative	24	54	39	32	67	27	72	22	68	32
TTAACATTTTGAGGCG	alt_211_negative	0	0	0	0	0	0	0	0	0	0
GTGCTCTGGTATCTCT	alt_211_negative	41	90	59	36	99	50	115	46	96	58
AGTATTGCGTTGGCAT	alt_211_negative	1	4	2	4	3	4	1	0	1	2
TTATACTTAAACGTTC	alt_211_negative	0	0	0	0	0	0	0	0	0	0
GTGTAAGATTGGAATT	alt_211_negative	0	0	0	0	0	0	0	0	0	0
GGTAAGGGTTGCGGTT	alt_211_negative	4	7	3	3	9	6	4	6	6	3
TAATTAAAACTACGGC	alt_211_negative	166	210	208	189	280	161	267	167	304	155
GAGGGAATCGTTTACG	alt_211_negative	34	70	56	45	78	29	81	30	70	43
TCTTTTCCGGGTAAAA	alt_211_negative	13	22	16	14	38	8	33	19	22	18
CGTGGATGCACTTACG	alt_211_negative	3	8	0	0	3	2	3	1	1	0
CTCCCGCGGTGATATC	alt_211_negative	13	41	19	11	39	12	36	15	53	21
GGAACGTTAGAGCCCC	alt_211_negative	43	52	41	34	78	34	83	25	84	27
ATCGCGTTTTGCAATA	ref_6040_new	19	19	32	21	26	19	24	13	37	21
ATTCGGCAACATTTAC	ref_6040_new	13	21	28	15	28	16	29	16	21	15
CGCGTATTGTACTCAG	ref_6040_new	6	12	6	10	6	9	5	12	13	7
AGAAAGTCGAGTTGCA	ref_6040_new	20	27	13	17	23	23	13	11	19	18
CAGATCGGACCATTGC	ref_6040_new	0	0	0	0	0	0	0	0	0	0
TCTTCTGCACAAGCAC	ref_6040_new	1	10	10	8	9	10	8	8	13	6
GTTTTATTTGTGTCGG	ref_6040_new	0	0	0	0	0	0	0	0	0	0
TTAGTCCGTATAAAAA	ref_6040_new	23	25	32	13	22	22	35	13	28	11
CTCTGTTGATTGAAGG	ref_6040_new	0	0	0	0	0	0	0	0	0	0
TACGAAGTACCCATTT	ref_6040_new	39	26	39	25	29	26	28	22	38	26
GCAGCCACTTTCTGTC	ref_6040_new	32	76	46	41	78	34	84	44	105	32
CCTTACAACAACAGTC	ref_6040_new	18	55	29	24	39	22	36	20	58	19
TAAATATTAATGTCGC	ref_6040_new	26	14	15	9	15	13	17	15	18	10
GCGCGGTTGTTACTTG	ref_6040_new	0	0	0	0	0	0	0	0	0	0
TCACGGCATCGCTGGT	ref_6040_new	19	15	25	11	16	21	15	13	21	27
TAGACCGCGATCTACA	ref_6040_new	69	59	74	59	62	52	67	54	57	54
AACGTTGCTCCTTAAA	ref_6040_new	0	0	0	0	0	0	0	0	0	0
CTTATTCAGTGACTCC	ref_6040_new	45	99	98	59	86	69	88	66	74	54
TTAGTAAAACATAACA	ref_6040_new	33	49	55	37	54	49	77	37	56	42
ACATCGAAACTTCTAG	ref_6040_new	9	12	7	5	9	11	8	6	7	5
CGCAGTACCGATGTTG	ref_6040_new	9	7	14	9	18	5	20	11	17	7
CCCCGGACCTTGGTAT	ref_6040_new	3	16	8	2	9	3	13	3	9	2
CAGACATGCGATGAAG	ref_6040_new	17	18	22	14	23	16	19	11	18	8
GTTTTCGAGCTGGCCC	ref_6040_new	70	77	77	71	77	65	83	57	79	73
GCTTTCAGTTAAGGGG	ref_6040_new	17	22	27	21	35	20	28	23	34	24
TACTGAACATTGTGGC	ref_6040_new	0	0	0	0	0	0	0	0	0	0
CTACCCTTTAAGATGT	ref_6040_new	0	0	0	0	0	0	0	0	0	0
GGGTCGGTCTTCCCCA	ref_6040_new	3	2	2	3	3	0	5	1	6	3
GCGAGATGCCGAAGAT	ref_6040_new	6	7	5	6	6	10	6	2	9	8
TTGCGTAAGGTTGGTT	ref_6040_new	0	0	0	0	0	0	0	0	0	0
TTGTATCGGTAAATTA	ref_6040_new	33	33	34	8	31	20	26	23	43	23
TCGGTTGTATCTTGAC	ref_6040_new	13	31	18	23	27	19	18	15	31	6
TTTCGTTTGGCAACAC	ref_6040_new	18	25	27	11	26	20	29	12	27	5
TTAGGCCAAATACCAA	ref_6040_new	24	31	38	24	35	26	31	20	46	25
TGCTGCGCGCGAAAAT	ref_6040_new	10	6	16	10	8	14	12	17	5	6
TGTCCTGGTACTTTCT	ref_6040_new	0	0	0	0	0	0	0	0	0	0
CTATTATTTCCTGTTC	ref_6040_new	113	90	127	122	108	87	98	82	101	86
GGACATTTAGACGCTG	ref_6040_new	10	16	9	5	6	6	6	9	15	3
TGCCGCTTTACTGATT	ref_6040_new	23	26	18	14	34	18	28	19	32	11
CCCAAACGCGCACAAG	ref_6040_new	395	408	435	425	443	370	432	380	461	346
TGTCTCGAACCTATAT	ref_6040_new	0	0	0	0	0	0	0	0	0	0
ACCTCGCCCCACCATT	ref_6040_new	19	40	24	22	33	26	38	24	38	32
GATTCCAAGAACAAGG	ref_6040_new	0	0	0	0	0	0	0	0	0	0
GTTGTGCATAGTCAGT	ref_6040_new	33	41	33	26	37	36	54	37	59	31
TCCAGACCGCTCTGTG	ref_6040_new	158	188	182	114	174	149	211	115	259	143
GACCCAATGAGGGTGG	ref_6040_new	0	0	0	0	0	0	0	0	0	0
CATAGGTAATTACTGG	ref_6040_new	11	10	9	9	6	9	9	7	20	7
CGATTATATCTTGTGG	ref_6040_new	67	65	90	53	76	71	83	46	80	39
TGACAGCTACAATCCA	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
TACTAACAGCAGAGTT	ref_1643_reverse	10	7	7	6	12	5	10	3	6	8
TCGTACTCGTTCGTCG	ref_1643_reverse	7	14	4	12	5	8	14	10	24	7
CAGGCTAGCAGATTTG	ref_1643_reverse	16	19	15	14	30	18	13	14	22	10
CTATCGGTCAGTACCT	ref_1643_reverse	1	1	1	1	6	0	1	0	0	1
CTTGTATGTAACTGAT	ref_1643_reverse	49	94	85	84	107	66	109	60	93	75
GCGGAAATTGTGGTAC	ref_1643_reverse	2	6	3	4	1	4	5	1	3	1
ATTCTTTAGAGCGATG	ref_1643_reverse	26	33	34	25	31	31	51	27	41	32
GCCCTCTAGGACCTCT	ref_1643_reverse	54	64	40	40	55	44	59	45	59	33
TCGACCAGGCGGCAGG	ref_1643_reverse	8	17	13	8	19	8	21	9	22	9
ATGGATGTGGGCGCAC	ref_1643_reverse	5	19	14	5	12	10	15	10	18	8
AGAAGGGAAAGAATGC	ref_1643_reverse	107	122	84	90	110	91	137	78	140	89
TGCTTGGTTGCGTTCG	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
GTCGCCCCGTGTAGTC	ref_1643_reverse	30	67	47	37	61	37	61	35	92	34
CTTCGCGCATGTGATC	ref_1643_reverse	16	28	28	9	29	18	29	15	37	15
CTGAAATATTGCCCGG	ref_1643_reverse	10	12	5	8	8	7	10	8	11	8
TGTCAGGGTTTCTCCG	ref_1643_reverse	2	5	3	2	2	4	0	1	1	0
ATGATTATGAGCCCGT	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
CATAATGGGGATGTGG	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
CTTCGATGGTATCATA	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
AGACGTGGATTCACGG	ref_1643_reverse	0	0	1	2	0	1	0	0	1	0
TTTGGTTTGATGTGCA	ref_1643_reverse	6	7	11	8	21	10	11	7	10	5
GCTATCTTGCCGGGTT	ref_1643_reverse	50	73	56	41	64	48	70	45	72	37
CAAAGTTACGATCTTT	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
GTAACGGTTGTGCTTT	ref_1643_reverse	28	52	49	33	43	35	71	37	72	36
ATACTCGAGCGCGACT	ref_1643_reverse	8	13	18	12	24	19	23	12	24	13
AGTCTTGGGGCGTCTT	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTTCACACTTTGG	ref_1643_reverse	8	17	12	11	16	16	30	19	18	16
GCAAGGTTTTTCTGTG	ref_1643_reverse	28	31	41	37	34	38	30	27	48	17
CCTCTACTACAACATG	ref_1643_reverse	8	9	7	5	14	5	10	6	9	3
GACGGTCCCGGAGTGT	ref_1643_reverse	20	31	19	10	29	15	16	15	26	23
GTCTTCTTTACAGTGG	ref_1643_reverse	4	3	7	2	0	1	5	5	2	0
TAAACTATGTGCGTAT	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
CCAGTCCGATCGTACT	ref_1643_reverse	9	30	19	7	20	10	20	12	27	12
CCATGCGGCTTTCACC	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
CGATCAAATAACTATT	ref_1643_reverse	5	11	6	5	9	12	12	11	11	10
TGTGAGATCTAGAACA	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTTGGGACCGTT	ref_1643_reverse	14	30	33	23	41	31	30	21	42	15
TGATTGGGCCAGCGTA	ref_1643_reverse	37	54	43	43	70	38	57	46	58	44
GGCTCTCATATTGGCA	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
GTGGGGTTGATCAGGC	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTCTACCACATTT	ref_1643_reverse	56	100	81	71	115	58	127	51	128	51
CGTCGCGTTTGCCGTT	ref_1643_reverse	9	18	12	9	13	9	14	9	12	6
ACAATTTTAGGCCCTG	ref_1643_reverse	33	27	44	42	36	41	26	24	39	31
GTTATGTCTACTGCCA	ref_1643_reverse	29	45	34	16	44	19	44	24	46	20
CTTTCTTCGTTTCTTT	ref_1643_reverse	33	36	42	41	45	53	49	38	39	35
AATCTGTTAACGTTAG	ref_1643_reverse	0	1	0	1	0	1	0	1	1	0
CAGGGCAGAGCGCCGC	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
TCTACGCAGGCTTTAC	ref_1643_reverse	9	9	9	7	11	6	13	8	9	7
TGCACGGTTAATAACC	ref_1643_reverse	3	5	5	4	4	1	0	4	5	3
TACTCGTCGCACATGA	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
TCCGAATCGCCTGCAG	ref_1643_reverse	11	17	10	6	14	9	25	8	15	10
TACAGGACGTATACCT	ref_1643_reverse	0	0	0	0	1	3	2	0	1	0
TATTTCAAGATTGCAA	ref_1643_reverse	5	9	10	2	7	7	11	4	11	3
CGGACACAATACGGCG	ref_1643_reverse	16	16	13	13	19	12	25	16	17	18
GTAGCACTCCTGGGAA	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
CTTTCCATGGGATGCG	ref_1643_reverse	19	22	21	16	49	14	33	16	37	20
GCCAAGCCCAATTACT	ref_1643_reverse	30	60	56	39	65	33	55	42	62	32
CTACTATGGCATCACG	ref_1643_reverse	4	5	9	6	3	4	5	4	5	3
ATAGCACTCCTGGGAA	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
GGGTAGCCAATGGACC	ref_1643_reverse	0	0	0	0	0	0	0	0	0	0
CTTTAGGACCTGGGTA	ref_1643_reverse	22	25	11	25	25	28	39	19	30	21
TGGGTCTTGGTAGGTA	ref_1643_reverse	60	71	59	48	60	53	77	53	76	57
GTGATCTTGTGATCAC	alt_5365_RC	21	14	8	12	17	23	12	15	12	10
TCATCACTAGCGTTTT	alt_5365_RC	78	71	98	91	62	80	62	85	60	77
TTGTGGCCACTGATAC	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
AAATCTCTATGTGCCC	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
CGGCCCCCTCCCTGGT	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
TCCGACTAGGACATTA	alt_5365_RC	1	11	1	5	7	9	3	5	2	7
GGCCTAAACTCGTCTA	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
GCCCGGTCCTTCAGTC	alt_5365_RC	2	4	4	4	9	6	3	0	8	3
GGTGGGCCGAAGTAAG	alt_5365_RC	45	24	37	27	28	31	27	37	31	36
TCTTCCCCGACTCGGA	alt_5365_RC	40	89	44	62	64	53	82	38	93	39
ATGGTTCTTCATGTTT	alt_5365_RC	27	21	31	25	28	27	22	25	35	29
CGATTTTAAGACAAGG	alt_5365_RC	18	17	36	26	28	22	24	26	26	17
GGAGCTTTGCGAAATA	alt_5365_RC	25	11	23	22	18	15	15	18	18	12
TCGTCTTATGTCTTGC	alt_5365_RC	36	40	46	52	35	54	34	43	42	32
CGTAGACTTCCGCGGA	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
CAAGTCATCCTACTCA	alt_5365_RC	23	21	20	29	21	15	27	21	26	10
GGGGCTTTTCGGTTGC	alt_5365_RC	136	116	177	184	107	137	105	146	111	124
TATCCCTATCTAAGTT	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
TAATATCAGCGCGTAC	alt_5365_RC	203	177	267	227	186	188	169	195	183	193
TTGGAAACATCTCGAG	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
GGATTTGTCGGTACGT	alt_5365_RC	27	27	36	29	26	21	14	25	28	23
TCACCGTACCAAGACC	alt_5365_RC	14	17	17	10	30	8	21	17	18	16
TTTTCCGACAACCAGC	alt_5365_RC	7	7	4	3	6	4	11	8	1	4
ATCTGTCAAGTCTGGT	alt_5365_RC	25	21	24	27	29	30	34	21	33	27
GCTCACGCCAATGGCT	alt_5365_RC	33	29	56	29	33	37	33	36	35	45
GACACTATCATTTTGG	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
GGGAAGTGCCCTTGTT	alt_5365_RC	37	48	42	53	40	42	31	35	34	31
CCTCGAAAGGCATAAC	alt_5365_RC	11	3	12	14	6	10	3	5	4	7
CGCAACGCTTACAGCA	alt_5365_RC	32	22	47	30	33	33	24	29	38	24
TTTTCTGTGAAACTTG	alt_5365_RC	7	2	13	4	2	3	5	1	0	4
GAAAATTTACATTGCG	alt_5365_RC	122	99	167	133	89	95	97	149	108	137
GCATCCGCTGTAGATT	alt_5365_RC	90	77	121	94	73	70	63	78	67	79
GTACTGATTGGGGCGA	alt_5365_RC	0	0	0	0	0	0	0	0	0	0
TGGACAACGTGACATA	alt_5365_RC	10	7	14	26	12	22	10	7	9	14
GCTTCTTCGCTGTTCG	alt_5365_RC	41	23	33	43	29	25	37	32	36	30
AAATATCGGCCACGTT	alt_5365_RC	32	31	52	37	42	47	45	40	41	35
CGGTGCTATCCTGAAT	alt_5365_RC	30	28	25	26	20	21	23	12	34	27
GTTCTCATCAATTCTT	alt_5365_RC	19	15	35	30	17	31	24	30	21	18
AATTTCTAATTGTACT	alt_5365_RC	75	49	111	91	65	78	76	97	73	64
TACTGCTTAAAACTGA	alt_5365_RC	7	6	10	3	6	8	5	5	1	2
GCACCTCTTACAGATA	alt_5365_RC	30	19	31	26	37	22	18	33	31	35
GGGAGTACATTGCGGG	alt_5365_RC	213	174	247	228	203	221	187	225	185	190
TGGATTGCGGTAGGGA	alt_5026_missing	5	8	4	1	9	7	11	10	3	4
CTTCTTTCACTGTCAG	alt_5026_missing	43	36	52	45	45	27	43	43	29	37
TACCTTTGAATTTGTT	alt_5026_missing	41	39	42	48	38	31	28	38	41	23
TCGAGGGGTACGGACA	ref_5026_missing	301	209	351	320	214	263	241	262	246	266
ATTCTGCCTTCCAGTT	alt_5026_missing	6	21	18	7	13	6	21	8	23	8
AAAAGTAATAAGAGGT	alt_5026_missing	17	14	31	20	21	22	21	23	22	28
GGGGCTCCTCTGGTTT	alt_5026_missing	23	8	35	26	13	25	24	21	20	22
TCCACAATTGGAGGTG	alt_5026_missing	10	14	19	16	5	12	13	7	24	16
ACTAGAGGTTTACAAA	ref_5026_missing	65	81	91	69	69	67	59	64	72	54
TAACAATTCGGCTGGA	alt_5026_missing	183	164	268	181	191	180	193	168	185	193
AAAGGCGTATGTCGGG	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
TACCGTGTGAGATTCG	alt_5026_missing	12	13	16	22	9	20	24	15	13	24
TGGGCTTTTTGTTCTA	alt_5026_missing	10	1	6	5	5	2	0	3	1	2
TAGGGACTGTTACACC	alt_5026_missing	44	31	26	34	26	22	41	20	40	25
CGGTGGGTTTACGTGT	alt_5026_missing	6	6	4	10	5	8	14	10	9	10
ATGCCATGCTTTTCTA	alt_5026_missing	49	47	66	57	50	39	38	55	61	38
ATTTGTCACTCTTGAA	alt_5026_missing	14	14	13	14	10	12	14	12	11	18
ACCTTATTTGCTTTTC	alt_5026_missing	17	5	8	20	14	14	8	15	16	15
CTCTGCCTAATGAGTT	alt_5026_missing	0	0	0	0	0	0	0	0	0	0
AATAATTGACTCGCTT	alt_5026_missing	0	0	0	0	0	0	0	0	0	0
GATTCAGTACCACCTG	ref_5026_missing	62	59	79	59	66	53	58	52	64	52
CTGAGTAGTGTCCTTT	alt_5026_missing	72	63	92	74	59	56	64	73	79	50
GAATCGTTGTCTACCT	alt_5026_missing	0	0	0	0	0	0	0	0	0	0
GCGTCGTACATAGCTC	alt_5026_missing	19	19	18	21	19	30	25	15	13	16
TCCAGATCTGCGTGGA	alt_5026_missing	31	27	50	35	31	33	28	33	27	23
ATATAACCTCGATACG	alt_5026_missing	6	2	4	5	2	1	2	6	6	2
AATTCTAGCAAGCAGG	alt_5026_missing	34	26	39	30	26	38	31	25	21	29
CGCTCCGCTTAGTTGC	alt_5026_missing	6	9	9	6	13	6	3	3	13	11
TGGTGGTCCTAGGTTC	alt_5026_missing	25	20	26	26	11	16	16	19	19	12
GGCACGCGAGGTAGGT	alt_5026_missing	120	68	136	103	74	103	78	94	74	120
AACCCGTCACATGTTC	alt_5026_missing	36	41	47	44	44	36	32	28	40	24
CTTGCTTCCATCAACC	ref_5026_missing	165	149	230	209	132	138	178	181	177	181
CTTTGGTACTTTAGCA	alt_5026_missing	31	32	31	40	34	23	37	25	30	31
ACACTTGTGCTAGTCT	alt_5026_missing	26	25	31	30	27	16	25	13	27	28
CTTGGGTAAATCGGCA	alt_5026_missing	31	34	50	33	26	33	32	30	36	35
GTCAGTCTGTGTAGCA	alt_5026_missing	49	53	57	39	40	51	47	53	41	40
CGCAACTCTTACTGCA	alt_5026_missing	0	0	0	0	0	0	0	0	0	0
GGTTCGTATGACATCT	alt_5026_missing	24	32	49	32	25	19	29	29	32	36
TCGATTTGTTCATTTT	alt_5026_missing	0	0	0	0	0	0	0	0	0	0
GGACACGTCACCCTCT	alt_5026_missing	5	3	4	2	4	1	4	4	6	3
TACGCATATGTTCGTT	alt_5026_missing	16	12	25	20	27	16	16	12	15	22
GGGATGTGCGATACGG	alt_5026_missing	0	0	0	0	0	0	0	0	0	0
AGACCGTTCCTTTCCT	alt_5026_missing	9	14	12	13	12	9	15	10	12	4
CCGCGGCTGAAAGTCC	alt_5026_missing	4	9	11	10	7	11	8	7	7	5
GGTCTGATCTCTCCGT	alt_5026_missing	0	0	0	0	0	0	0	0	0	0
AGATGAATGTCTTCAG	alt_5026_missing	6	6	4	6	2	3	3	3	4	2
TCATAAATTAATTGGG	alt_5026_missing	18	16	10	11	10	12	17	14	17	14
CTGGTTAACCACTACG	ref_6073_new	62	85	66	64	106	43	85	56	83	44
CTGGTATCTGCAGATG	ref_6073_new	6	11	12	3	20	6	23	16	21	10
AACTCTGACTGTGTCT	ref_6073_new	21	63	30	26	68	20	77	25	81	16
CTTAGACGCGCGCCGA	ref_6073_new	8	11	10	5	11	10	12	9	6	9
TGCTGGATTTGGCCTT	ref_6073_new	0	0	0	0	0	0	0	0	0	0
GGTTCTGTGACCGAGC	ref_6073_new	4	2	7	8	8	4	8	6	9	3
ATATATCGCCTAATCG	ref_6073_new	0	0	0	0	0	0	0	0	0	0
TCGGGCGTGTATGGGT	ref_6073_new	24	31	20	19	39	15	27	22	27	10
ACGTTGCTCAACTTGA	ref_6073_new	10	25	28	24	29	12	26	22	23	17
CAGGGATTTCTGAATT	ref_6073_new	0	0	0	0	0	0	0	0	0	0
TTTTTATCATCCCATA	ref_6073_new	18	10	13	6	6	8	10	8	13	6
CATCGTCTTGACGTCT	ref_6073_new	8	10	9	8	16	6	15	6	16	10
CTATTTCGTTCCACTT	ref_6073_new	27	48	32	31	50	30	54	21	57	25
CAACAGTGCTCCTGGG	ref_6073_new	26	45	28	20	50	27	47	29	34	20
ACCTTGCGATACTGTC	ref_6073_new	42	79	60	49	63	34	66	35	93	32
CGGTAGCTTCATGAGT	ref_6073_new	0	0	0	0	0	0	0	0	0	0
CACATGCCCGTAGTTT	ref_6073_new	0	0	0	0	0	0	0	0	0	0
TGAGGAGTAAAGTTCG	ref_6073_new	5	22	10	9	17	13	14	9	29	13
TCGTCTGAGCTGCTCT	ref_6073_new	20	33	31	19	37	17	32	21	28	16
TATCTTTTTCATCTTA	ref_6073_new	15	18	19	14	27	9	30	17	30	9
TCTGGAAGGTTGGGCG	ref_6073_new	24	44	21	19	33	24	47	23	46	21
TTTTTCGGTAGTATGC	ref_6073_new	57	96	87	61	101	43	129	64	123	46
GTCCATTTTCGCACTC	ref_6073_new	27	43	48	22	40	32	39	20	43	20
ACTTCAAGCTTCCCCA	ref_6073_new	12	30	11	18	34	16	30	15	29	17
TACGTCCAACGGATTC	ref_6073_new	27	45	25	24	50	18	44	18	28	24
CAAAATTCTTTGAGGC	ref_6073_new	23	61	60	32	55	44	71	42	83	30
AAGGCGTATCAGGCGA	ref_6073_new	0	0	0	0	0	0	0	0	0	0
CATATTGTTCGATTTC	ref_6073_new	12	38	20	24	15	19	31	13	29	14
TTGCTGGTGGCGACCG	ref_6073_new	0	0	0	0	0	0	0	0	0	0
TCTGTATTTCAATCAT	ref_6073_new	9	13	15	8	14	7	19	11	16	5
CATCAATATATCTAGG	ref_6073_new	12	24	17	15	27	12	21	15	28	11
CTTACTTCATTTTTGA	ref_6073_new	6	15	9	13	24	8	21	11	28	10
TACAAGTCTGTCCACT	ref_6073_new	27	42	40	39	55	26	57	30	47	31
GGCGTCCTACTCAACA	ref_6073_new	10	12	12	20	22	8	15	12	25	10
TGGCGGGGTATGCCTG	ref_6073_new	21	43	26	28	47	34	37	24	56	15
ACCTGAACTCGGCGAA	ref_6073_new	6	18	5	4	14	5	12	7	16	6
GATGTGCGCTTTCTTT	ref_6073_new	87	143	113	94	154	103	149	108	151	77
AACCTCTCATGGTTTG	ref_6073_new	16	22	9	6	19	8	15	9	26	6
CACGGTTCACTCTTAT	ref_6073_new	30	45	30	20	63	21	51	18	51	21
GGATATCCCTCGCTTG	ref_6073_new	14	23	17	11	11	10	9	10	21	12
GAAGGGATTGGTATGC	ref_6073_new	3	5	6	4	4	3	8	4	10	6
TGCTCCTTATCGCCTT	ref_6073_new	0	0	0	0	0	0	0	0	0	0
TTACTTCAATGTGGGC	ref_6073_new	0	0	0	0	0	0	0	0	0	0
GGTTACACTTGAGGCA	ref_6073_new	14	17	7	11	23	10	18	8	29	6
TGATACGTTCAGCGTA	ref_6073_new	0	0	0	0	0	0	0	0	0	0
ATGCTCGTCGCTTCCT	ref_6073_new	11	17	12	8	16	13	16	5	19	12
GGCGATCTTTCGACGT	ref_6073_new	4	4	4	6	2	3	8	10	8	5
TTGCACGGGCACCAAG	ref_6073_new	0	0	0	1	0	0	0	0	0	1
CATTGTCTTATCAACG	ref_6073_new	0	0	0	0	0	0	0	0	0	0
TTAGGAGTGTGATCCA	ref_6073_new	0	0	0	0	0	0	0	0	0	0
GTGGCTCTGTTGGGGT	ref_6073_new	58	84	53	52	85	44	86	53	101	59
ACGACATATGTCTCGT	ref_6073_new	0	5	4	1	1	2	3	2	3	2
CTGGTATACTTTGCCC	ref_6073_new	36	42	21	29	47	23	28	20	63	28
TTCTCTGTTCTAAATT	ref_6073_new	9	14	5	6	16	5	17	8	8	6
CTACCGGGGTCATTAC	ref_6073_new	5	13	0	4	25	9	10	2	15	5
AATTGCGGGTAGGTCG	ref_6073_new	2	13	7	5	8	6	19	11	9	10
CGAGCTACCCGAATAT	ref_6073_new	10	30	11	15	40	31	24	10	25	12
TTAGGCAGCTTGGTAT	ref_6073_new	5	12	5	5	9	12	8	7	12	3
TTATCTCTGGGTTTTT	ref_6073_new	0	0	0	0	0	0	0	0	0	0
ACTTGCCAAGTACCGA	ref_6073_new	4	15	4	5	15	3	15	8	15	3
AAGTAATGAGCCCTTG	ref_6073_new	0	0	0	0	0	0	0	0	0	0
AATAGCTCATAAACTT	ref_6073_new	8	24	26	17	30	19	21	17	24	18
AGATTATTACTGCGTA	ref_6073_new	8	17	21	10	17	16	32	10	33	12
CTCCGCCCCAATCCAA	ref_6073_new	0	0	0	0	0	0	0	0	0	0
CTCGCCGTAACACCAC	ref_6073_new	0	0	0	0	0	0	0	0	0	0
CTGAGTATTGCCTACG	ref_6073_new	0	0	0	0	0	0	0	0	0	0
TAGGCTCCGACGTTTT	alt_666_RC	13	15	11	4	21	15	13	9	21	9
ACAGACAATCCGCACC	alt_666_RC	0	0	0	0	0	0	0	0	0	0
ATATTTAATAGCGTGG	alt_666_RC	23	55	24	29	48	17	46	17	59	21
TTTGGATGTTGCCCTC	alt_666_RC	0	0	0	0	0	0	0	0	0	0
GCTACGGGTGTCCTGT	alt_666_RC	15	40	35	21	48	25	43	20	49	19
GGTACTCCCCATCTAC	alt_666_RC	3	27	3	4	25	0	32	2	34	2
AAGGGTCTTCTAGTAT	alt_666_RC	2	7	3	5	9	2	11	6	12	3
ATGTCCAGCTGAACAA	alt_666_RC	33	46	38	30	46	19	51	18	48	22
TGTCCTCGATGAGACG	alt_666_RC	21	42	30	26	34	16	37	22	43	19
GGGGGATCCTGCTAGT	alt_666_RC	44	87	53	82	99	51	89	53	89	42
ATTGGAGGCGATTCCA	alt_666_RC	0	0	0	0	0	0	0	0	0	0
CAGAGACTTATTTATT	alt_666_RC	29	87	45	47	75	39	115	35	93	33
GGCTTAAGGGTTATAC	alt_666_RC	13	31	31	20	40	12	42	19	37	13
CTTCTTACATCGTAAA	alt_666_RC	28	29	37	27	38	31	38	30	51	25
TTAACATCGAACATCT	alt_666_RC	14	37	26	26	34	16	21	23	31	19
AGTCTCTCCCTATGGG	alt_666_RC	27	44	25	17	65	23	48	29	72	19
CTATTATCTATTTTTC	alt_666_RC	0	0	0	0	0	0	0	0	0	0
GAGATCACCCTTTTTC	alt_666_RC	30	38	32	30	41	22	52	17	42	23
TAGCGACGTTTTTATG	alt_666_RC	9	17	11	6	22	7	20	9	19	3
TCAGATACTTCGGTAT	alt_666_RC	10	17	7	6	20	6	14	11	12	8
TGTAGGAGGTAAAATA	alt_666_RC	44	66	44	45	56	39	56	30	73	27
GTAGATTTTACTCTTG	alt_666_RC	2	3	1	4	13	3	4	2	9	2
CCCCCCTCTCGTCCGG	alt_666_RC	6	15	9	9	16	9	21	8	17	9
GTGGTTTGAGAGGTAT	alt_666_RC	22	56	20	31	44	32	43	17	60	20
CACATCCCGGTCAGTA	alt_666_RC	16	20	21	24	39	14	25	17	23	11
CGCTGAGTAAGGTAAA	alt_666_RC	16	32	25	23	29	22	34	10	33	18
TATGAATCCACGACGG	alt_666_RC	135	201	143	118	201	108	239	75	225	97
AGGACTCTCTTGTAAT	alt_666_RC	13	25	6	19	35	6	28	16	29	18
CAGGATTTTGGGTTTT	alt_666_RC	36	62	39	41	66	37	72	40	80	40
GTCTGCGGCCCGGCCG	alt_666_RC	0	0	0	0	0	0	0	0	0	0
TCGCCGTACCGTCGTC	alt_666_RC	6	28	18	8	40	10	26	15	25	7
CGTCGGCCTCATTTGG	alt_666_RC	0	0	0	0	0	0	0	0	0	0
TCCCCATGCTTTTTCC	alt_666_RC	25	29	30	33	46	24	34	29	49	25
CATCTGCGTTCTCATC	alt_666_RC	15	32	27	21	33	17	38	19	42	9
ACTATATATGCCTGTA	alt_666_RC	0	0	0	0	0	0	0	0	0	0
TAAACCTGAGCCTTAG	alt_666_RC	64	112	61	46	117	55	94	30	109	52
ATGGGTCGTTATTTCC	alt_666_RC	58	89	53	48	86	42	96	44	94	35
TAAATTCGTTCAACTC	alt_666_RC	7	24	13	8	23	12	24	8	24	9
ATTTATCGGGAACTCG	alt_666_RC	0	0	0	0	0	0	0	0	0	0
AATCGTGGAATCACCA	alt_666_RC	1	7	4	6	11	10	10	2	4	3
CGCAACTCGCATATGA	alt_666_RC	11	14	16	9	20	13	24	5	19	12
TCCCAAGACGCCCATA	alt_666_RC	11	15	20	15	22	20	26	12	23	11
CGCCCCGTTATCCGCG	alt_666_RC	21	20	15	4	24	14	25	12	16	14
AATGTCTTAAGGGCTC	alt_666_RC	119	208	130	93	200	127	239	111	217	91
CGGTGCCTGTGGACAT	alt_666_RC	18	40	31	21	44	17	42	19	33	27
GACCCTAACGCGGTTA	alt_666_RC	0	0	0	0	0	0	0	0	0	0
AGAGATCAACGTTACC	alt_666_RC	0	0	0	0	0	0	0	0	0	0
GCGACACACACTTTTT	alt_666_RC	1	7	5	7	13	4	13	3	10	4
GGATGGCGGGCTAAGA	alt_666_RC	0	0	0	0	0	0	0	0	0	0
CTCTTCGCCCACGTCC	alt_666_RC	0	0	0	0	0	0	0	0	0	0
TCAACTGGCCTGATGC	alt_666_RC	17	33	18	21	54	14	46	17	31	16
GAATTTGCCTACCGGT	alt_666_RC	31	50	31	25	61	23	71	29	60	22
CTCTTCGACCACGTCC	alt_666_RC	55	98	71	55	117	52	112	47	127	44
GCAAATCACGCAAACG	alt_666_RC	5	13	5	4	11	9	8	5	14	4
CGTGACAGCGACGAGT	alt_666_RC	64	120	72	66	117	65	109	73	109	76
TGGAACTTTGGGGGCC	alt_666_RC	128	182	152	127	198	118	167	86	197	113
TGGCTTTTGCGACCTA	alt_666_RC	5	9	12	1	9	2	8	3	16	7
CTATTCAACCTCCTTT	alt_666_RC	26	84	35	33	83	33	81	40	81	43
GGTCGATTTGAGCTTA	alt_666_RC	85	186	69	67	164	64	188	63	192	68
GCTTTAGGGTCTATCC	alt_666_RC	16	46	29	18	45	15	39	20	44	12
TATTTGTAAACGGATG	alt_666_RC	23	42	41	26	64	28	42	16	62	15
ACTTCCGCACCGTTTT	alt_666_RC	16	94	26	20	101	13	102	21	134	31
CACTTATGGTCGCTAT	alt_666_RC	51	77	51	39	91	56	78	45	92	44
CTCTCAGTGGGCTTTT	alt_666_RC	0	0	0	0	0	0	0	0	0	0
ATTTTTTACTATCGTG	alt_666_RC	38	70	56	48	76	55	111	44	109	48
TGCCGATCCTCACGGC	alt_666_RC	7	16	5	14	14	9	21	8	15	7
CGGCACTTCAACGTCC	alt_666_RC	0	0	0	0	0	0	0	0	0	0
CAGTTCCTACTCGCAA	alt_666_RC	0	0	0	0	0	0	0	0	0	0
TGGTGGTTCCTATTTT	alt_666_RC	1	6	7	6	5	5	8	6	8	2
GTGTTGGTGGTCGTCT	alt_666_RC	36	46	32	22	52	23	57	27	65	34
ACTGACAATCCGCACC	alt_666_RC	0	0	0	0	0	0	0	0	0	0
TACCCAGCTCGGTGGT	alt_666_RC	0	0	0	0	0	0	0	0	0	0
GGGGGGGTCAAGGGTG	alt_666_RC	68	122	73	49	125	80	107	52	150	63
TAGAGGTCGTTCCGGG	alt_666_RC	186	278	224	188	289	204	293	197	344	175
TGTGTGAAAGTTGCTT	ref_1246_upstream	32	39	27	21	46	17	33	30	28	18
ACACGCCGATCGGATC	ref_1246_upstream	2	10	2	5	2	8	6	1	4	3
GTGACGCGGGAAAGTC	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
CCAGATCTAGAACAGT	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
CTTACTTCTTTTCTTT	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
GATCGACGGGGAAGCT	ref_1246_upstream	13	11	10	9	21	9	10	14	10	8
TAGACGACATAACGGT	ref_1246_upstream	40	47	38	29	53	28	47	43	45	23
TAAACCCCTAATCTTG	ref_1246_upstream	10	10	10	11	13	11	18	4	4	11
CTTCCGTTGTGCGCCC	ref_1246_upstream	58	109	83	60	104	73	114	54	112	66
AGCGTGTAAGAAAGTT	ref_1246_upstream	93	120	111	94	109	77	96	77	115	72
TCTCAGCACGTATGAG	ref_1246_upstream	19	43	28	36	41	31	31	24	44	23
GAGACCTGCGTCCGGG	ref_1246_upstream	32	28	42	32	41	30	52	21	46	31
CGCCTCTATCCAATTC	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAATGTACTCGAG	ref_1246_upstream	10	12	11	8	12	8	15	6	15	11
TCGGGGGTACATGTCC	ref_1246_upstream	16	22	22	18	21	14	22	10	21	15
CAATACAAGAGGTAGG	ref_1246_upstream	28	27	24	21	18	19	31	17	31	19
CCGTCGGCTTTTTATA	ref_1246_upstream	16	28	25	27	29	21	23	12	38	15
ACCCACTCAACCGACT	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
CACGTGGAGCGGATTG	ref_1246_upstream	19	33	23	20	40	19	38	18	32	26
CACGGCGACTGGGGAG	ref_1246_upstream	12	43	15	14	33	19	41	3	44	10
CCGTCCTTCTAATTGA	ref_1246_upstream	2	23	6	3	25	7	27	2	20	3
GAGTCGGTAACCGGTA	ref_1246_upstream	13	26	22	15	17	14	27	21	37	19
TATTTGGGATAGAAAG	ref_1246_upstream	25	50	31	33	52	36	52	33	56	20
ATTTAGCTATCGACTC	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCCCCATCGATTA	ref_1246_upstream	18	17	16	19	20	17	12	18	29	17
TCTCCCGATCCTTACG	ref_1246_upstream	6	7	14	7	9	7	15	2	14	8
CCTTGTCAACTACTGC	ref_1246_upstream	14	46	15	13	23	6	34	10	41	12
TTAGGAACCTGTGTAG	ref_1246_upstream	29	65	44	37	58	36	78	25	55	33
GCGACTTCTCCGTGAA	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
GACAGACTGCTAGTTT	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
GCACCGGCATAGAATA	ref_1246_upstream	6	5	3	3	5	6	11	3	3	5
GCATCGCCATCCGGTA	ref_1246_upstream	9	15	13	11	18	15	28	16	28	15
GCCGTTGTGCGCCGGT	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
AGGCAAGCCTAAATGT	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
GATACCATATACCCCG	ref_1246_upstream	31	59	52	63	78	44	80	38	76	35
TGGGATCATATGTAAC	ref_1246_upstream	3	4	11	8	2	3	4	5	5	1
GTATTCTATGTAATAC	ref_1246_upstream	0	0	0	0	0	0	1	0	0	1
CCTTATTTCTCCGGGA	ref_1246_upstream	4	9	9	19	20	7	19	13	18	7
AGTTGGCAGTCTTTAT	ref_1246_upstream	64	95	95	58	97	62	108	62	114	59
GGGGTTCTACCCAGTC	ref_1246_upstream	55	118	60	80	128	61	115	71	112	60
CTCCACACGTGATCGC	ref_1246_upstream	1	7	1	1	2	2	2	0	3	0
AGGAAAATAGTTCTGG	ref_1246_upstream	44	78	63	54	82	49	63	48	90	36
AACAATCTACTGGTGT	ref_1246_upstream	34	43	25	30	51	39	39	14	49	28
GCTAGAAGCATTGTCT	ref_1246_upstream	43	71	50	51	53	57	69	43	73	39
GCATAGAATGATCTTC	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
GAATGAGATTAGGGGT	ref_1246_upstream	12	30	20	19	21	19	41	13	22	19
GCCAATTGCTTTTAGG	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
AAGATTGCCCCTTTTG	ref_1246_upstream	1	3	2	0	2	1	0	4	2	2
CCCGCTATCTTACACG	ref_1246_upstream	0	7	0	0	1	3	5	1	2	0
CGTTCTGTCGAATACT	ref_1246_upstream	29	55	38	23	57	28	48	20	56	24
CTCGGACATTATTAAA	ref_1246_upstream	21	40	20	23	43	20	50	24	59	25
GGTCACCGTATGCAGG	ref_1246_upstream	37	68	43	36	77	27	58	21	73	32
TGAGAGTTATCCGCAC	ref_1246_upstream	28	39	16	23	37	20	39	20	21	22
AATCTTTACTCGACCA	ref_1246_upstream	27	40	38	33	40	28	35	23	32	28
CTCTTTCTCCACGTGA	ref_1246_upstream	146	178	149	148	168	139	260	112	217	125
TTGAGCTAGTAATACT	ref_1246_upstream	34	38	38	21	38	23	37	25	55	31
GGATCGTGGTACGCCG	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
AAATCTGTGTGCCACG	ref_1246_upstream	14	26	18	14	24	23	20	22	30	15
CCCAGTCTGCGACATT	ref_1246_upstream	67	81	95	62	84	59	119	54	113	54
TGACTGAACCAGCACC	ref_1246_upstream	12	31	22	13	44	16	58	19	29	12
TTGATGTGCACAACCA	ref_1246_upstream	25	44	31	23	53	17	58	30	52	21
CGACGCGCACTAATTT	ref_1246_upstream	15	25	14	31	23	16	29	13	28	14
TAGAGTTCAGCAATCG	ref_1246_upstream	5	12	9	6	17	5	15	9	11	8
GTCTAGCGACATCTTG	ref_1246_upstream	77	78	70	61	94	46	84	61	77	51
GCGGCATGTAGCGACG	ref_1246_upstream	34	30	25	31	28	25	32	23	46	31
CGGGGAGCACATCAAT	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
CCATCTCGTTTTCGCC	ref_1246_upstream	4	5	4	5	4	9	8	4	3	4
TGTCCTGGTAATTTCG	ref_1246_upstream	15	19	13	12	16	15	18	8	21	7
GCCCTGATGGCCATCG	ref_1246_upstream	105	164	128	88	178	104	165	85	172	73
GTAATTTACTCATTAA	ref_1246_upstream	0	0	0	0	0	0	0	0	0	0
ACCATTTGTTAACTGT	ref_1246_upstream	213	325	216	188	354	202	344	173	359	174
AACGTGAATCCACTCC	ref_1246_upstream	8	13	13	4	10	4	6	5	11	9
ACTTCAAAGTTATTTA	ref_2432_missing	0	0	0	0	0	0	0	0	0	0
GTGTTTTGGTTACGGA	ref_2432_missing	4	14	3	2	11	3	12	3	12	1
CTGGTTTTACGTAAAT	ref_2432_missing	10	16	8	3	14	10	14	11	24	6
GCCCGTGAAGATATTG	ref_2432_missing	59	149	54	32	190	52	170	34	187	33
TCTTCAAAGTTATTTA	ref_2432_missing	0	0	0	0	0	0	0	0	0	0
ACGTATACGTTAGGGG	ref_2432_missing	4	13	10	4	13	8	10	4	13	7
CAGCGAGAGTGCCAGA	ref_2432_missing	11	20	19	5	24	7	20	11	26	6
ATACGGGGCAGACGTG	ref_2432_missing	43	58	68	36	106	48	108	46	119	53
GCAAATATCGTCCTCA	ref_2432_missing	24	54	36	33	53	29	53	32	75	31
CGGACCAGAAGTCTAG	ref_2432_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTTACCCCTGAA	ref_2432_missing	0	0	0	0	0	0	0	0	0	0
TGATGTCCGCTAGACA	ref_2432_missing	21	54	29	26	58	22	64	28	64	21
CCGCTTTAATGTTCTG	alt_3554_fdr	53	96	88	61	83	64	75	75	94	54
CGCGCCAACCCTCCAC	alt_3554_fdr	285	245	351	254	255	236	252	273	244	226
TCTATACCGCACTAAG	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTGGTTATCTGTG	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCTTTCTTTGGAG	alt_3554_fdr	165	164	155	152	151	183	158	140	170	157
TGAAGCGGTGTGCCAG	alt_3554_fdr	4	5	11	5	3	8	8	11	7	9
GGAATTGATCTAAAAC	alt_3554_fdr	3	5	4	1	2	3	4	4	3	0
TACGTCATTCTAGAGT	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
AGCGATAAACTCTTGA	alt_3554_fdr	47	30	39	44	34	47	43	29	26	50
CAGGCTTTGGATCCTA	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAGGGTGTCCAAA	alt_3554_fdr	15	13	13	6	17	19	17	8	21	9
AAGGGCAATTGGTAAT	alt_3554_fdr	28	22	40	41	34	29	33	17	56	22
TCCAATTTTCGTGTTA	alt_3554_fdr	63	50	89	50	48	46	59	45	56	51
ACATGTACCCGGACGG	alt_3554_fdr	8	13	8	4	9	6	7	5	5	13
TCAGTGGCCTGAGCGT	alt_3554_fdr	16	20	24	16	13	17	22	16	15	21
CCTAATTTTTCGTGAA	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
GTATTGCAGTTAGCAG	alt_3554_fdr	99	80	95	90	87	72	73	78	117	71
TGGCCTCTTCCGGGTA	alt_3554_fdr	195	164	228	192	150	185	151	171	160	195
TGCGTTTGTAAGGTGC	alt_3554_fdr	43	49	60	50	39	61	53	45	44	56
TTGTCATGAATTCTCA	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTCTGGTATGGGT	alt_3554_fdr	12	16	16	14	8	11	10	15	11	13
ACGTCGTGAATCGAGG	alt_3554_fdr	50	26	46	23	34	34	39	36	41	49
CCTTACATTGTCGCAA	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
CCGGTAAAGGCGGCTT	alt_3554_fdr	105	143	162	110	150	106	119	107	203	94
TTGCTTCGGAATGTGC	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
ATTCGGACGATTTATC	alt_3554_fdr	6	15	20	12	10	19	16	10	10	14
GGACGCTACATTAACT	alt_3554_fdr	181	177	168	147	171	142	197	169	176	155
TATATCTTGCATGAAT	alt_3554_fdr	116	112	128	93	111	99	130	100	118	113
ATTTAATCTTACGTTA	alt_3554_fdr	19	31	45	24	42	34	27	29	29	32
GGCAACTTGTACTAGG	alt_3554_fdr	8	5	11	6	9	9	7	9	8	8
GGGTTCGTGTAGGTTT	alt_3554_fdr	0	0	0	0	0	0	0	0	0	0
TACGATTCGCCACAAT	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
AATTCTACATATTCCG	alt_2031_upstream	0	0	2	2	2	2	4	1	0	2
TGCATTAAACTCATAT	alt_2031_upstream	5	1	12	4	10	4	10	7	13	7
GTCGTTTTACGCCTCC	alt_2031_upstream	10	10	4	11	18	15	5	8	15	12
GATGCCTGAGGGATTA	alt_2031_upstream	8	12	11	9	10	10	17	11	7	7
TGCAACCCCGGCGTAT	alt_2031_upstream	191	323	213	193	338	176	330	140	332	158
GATTATTGCGCAGTTA	alt_2031_upstream	25	39	32	39	56	38	45	24	41	25
CGTCAGTCTGGCTGGG	alt_2031_upstream	59	54	55	51	74	40	70	48	76	40
CGCTCAAAGCATTCCG	alt_2031_upstream	12	19	19	15	30	16	35	14	24	15
CTTGAGTCCATTCTGT	alt_2031_upstream	60	104	69	69	92	65	87	67	112	39
TGTGTACACAGGCACG	alt_2031_upstream	88	106	111	85	128	81	111	78	137	64
TCGGCTGTCTCTAGGA	alt_2031_upstream	73	94	90	74	74	47	103	70	77	65
ATTTATAGGGATATGT	alt_2031_upstream	229	302	249	239	299	223	324	217	346	198
CAATCCAAGCCACTTT	alt_2031_upstream	1	2	0	1	2	2	1	2	1	0
GGGAAAGGTGCATTCA	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
ATGTAGAGTATCTCTG	alt_2031_upstream	34	28	19	24	41	30	35	31	38	25
TTACTACCCTCGGCGC	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTTAATTTGCTGG	alt_2031_upstream	15	32	17	17	42	15	26	6	47	12
TATGGGACCACGCAGG	alt_2031_upstream	168	190	161	164	178	134	185	164	184	121
TCCTTTTGGCGTCTTC	alt_2031_upstream	55	40	72	43	50	38	50	31	50	47
CACATGTGTTAAACGT	alt_2031_upstream	148	190	167	147	212	125	202	125	211	114
CTTGTTCTAAGCGCTT	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CGGCAACTGTGAGTAC	alt_2031_upstream	1	5	2	1	8	3	7	2	17	3
AGCAATCTCGGTGTTG	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CATATGCGTGGGTGAA	alt_2031_upstream	24	25	19	20	28	17	24	18	21	16
CGATCATCAGTTTGCT	alt_2031_upstream	123	133	158	115	133	96	159	104	167	101
GACCCACGGTAGGAGT	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGTGGGACTCTCT	alt_2031_upstream	33	25	39	31	36	22	25	17	31	23
GTATCCATGTACCGGC	alt_2031_upstream	27	41	38	37	54	25	43	25	54	26
CAACTCCCTATCTTAA	alt_2031_upstream	2	12	6	8	23	5	33	8	27	1
ACTGTCGGCTACTCGT	alt_2031_upstream	35	32	47	39	48	30	35	35	41	25
TTGACACCTAGTTCCG	alt_2031_upstream	248	366	291	222	389	235	389	228	434	199
GGCTGTCTCTCTGGGT	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CCCATACCAGTCTTTC	alt_2031_upstream	115	168	143	132	167	122	201	120	205	94
TCACGTAGAGACTACT	alt_2031_upstream	18	20	21	18	20	12	20	24	22	15
GCTCCCCAATAGCCTA	alt_2031_upstream	6	14	6	2	23	3	22	2	11	4
GAAGTAACTTGGTGTG	alt_2031_upstream	15	21	15	15	18	17	17	11	22	15
TATTCATTGCCGGGCG	alt_2031_upstream	29	31	25	29	38	26	33	33	26	34
TTTGATAAGCATCCCT	alt_2031_upstream	54	62	83	40	66	50	65	47	52	44
GCTTTTAATGCTGAGT	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCCTCTCCGAATC	alt_2031_upstream	54	77	70	59	100	45	98	43	84	59
GGCCCGATGTGTGCCC	alt_2031_upstream	26	45	36	29	31	27	54	26	45	30
TAATGGGAGGACATGT	alt_2031_upstream	126	194	167	139	150	173	191	102	189	116
CGTTAAAGGTATAAGA	alt_2031_upstream	17	19	27	24	29	28	26	26	35	19
TTTTATTTTCTTTCGC	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTCCGTCGATGTA	alt_2031_upstream	14	29	9	13	14	12	17	11	16	9
TTGTATGCACCGTACC	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
AGTTCCTTTTTAGATA	alt_2031_upstream	19	14	12	19	16	10	14	14	26	18
CCCCGTCGGACTGCCG	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
AATTCACGTCGGCTTA	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
GCCTCGTACAGACGAG	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
AGATACTTCAGGTTTT	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
ATTTTCTGACAAGAGT	alt_2031_upstream	2	2	3	6	1	3	1	1	5	1
ATGTATGAATTCGGGT	alt_2031_upstream	17	25	15	19	26	18	30	20	33	18
CAACTCTGTGGCACAG	alt_2031_upstream	4	16	10	15	13	7	15	5	14	4
AGATCCCTGTTTCCCC	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGCCTTGATCAAT	alt_2031_upstream	33	28	33	20	11	11	29	19	47	26
GCCGTGGACGACTCCC	alt_2031_upstream	5	7	10	7	8	8	8	3	9	4
TTTCCCTGGGCTCTAA	alt_2031_upstream	6	8	8	9	14	4	8	13	14	12
CTGTGTTAGTTATAGT	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGTTGTAGGATCC	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
GGGGAAATAATACCGT	alt_2031_upstream	7	11	14	7	5	1	5	15	15	5
ACTGGCGACTGGCTGC	alt_2031_upstream	31	41	50	25	29	28	37	36	52	27
CTTCCTGGACTCTTAC	alt_2031_upstream	0	0	0	0	0	0	0	0	0	0
CAGCGAATGCTGTTAG	alt_2031_upstream	59	115	99	75	82	63	90	43	113	54
TATTCCGGCTCTGCCA	alt_2031_upstream	52	66	62	46	51	41	55	36	65	41
GATATTCATGGCGGGT	alt_2031_upstream	6	5	9	11	12	3	10	6	8	4
CTTAAAGCCATGCCGT	ref_5710_new	2	2	0	2	0	1	0	2	1	1
CCATAACAACCTCCCT	alt_5710_new	43	62	53	44	55	31	74	36	55	39
CCTGCTCCTTACGATT	alt_5710_new	37	63	34	27	74	28	65	27	60	29
TTTTTGTTTCATGCTT	alt_5710_new	33	36	32	22	30	18	26	30	37	35
GCACTATTTATGATTC	alt_5710_new	21	17	17	19	22	15	20	14	28	17
CTGGGGCCTGTTTTGA	ref_5710_new	26	21	21	17	33	16	23	20	18	19
ACGGCGGTCCACGTGC	ref_5710_new	2	12	0	2	13	4	11	3	5	3
GGATTATCTTGCACCG	ref_5710_new	0	0	0	0	0	0	0	0	0	0
CCTATAGTTATCTACT	alt_5710_new	12	8	6	2	14	4	8	1	4	1
CTGATCGATCCTTCGC	ref_5710_new	0	0	0	0	0	0	0	0	0	0
CGGAGTTCAGTATATA	alt_5710_new	52	94	58	44	74	56	72	61	87	46
GGTACCCACCACAATG	alt_5710_new	0	0	0	0	0	0	0	0	0	0
AAGATAAGGTTCGTTG	ref_5710_new	2	6	5	9	4	4	6	6	5	4
TCGGGATCTCCGATCC	alt_5710_new	0	0	0	0	0	0	0	0	0	0
CACGAATCGTCGGTTT	alt_5710_new	54	62	38	44	54	40	54	46	71	45
CAAAGGGATCATCTTT	alt_5710_new	2	6	5	4	2	0	7	6	1	3
CGGTACTTTCGGTCCC	ref_5710_new	8	10	11	7	13	6	5	10	11	7
AGGTCGCGCCCCACGA	alt_5710_new	28	44	41	29	38	27	40	22	23	25
ATTCGTTGGTGTACTC	ref_5710_new	0	0	0	0	0	0	0	0	0	0
GGAGGACCGTGTATAC	ref_5710_new	0	0	0	0	0	0	0	0	0	0
TGACCGAGGTTGGCTT	ref_5710_new	28	28	31	26	28	22	27	32	40	15
CCCCCTGGTTTCGCAG	alt_5710_new	0	0	0	0	0	0	0	0	0	0
GTTTCCTCGACCGCCA	alt_5710_new	10	12	9	6	10	7	14	7	13	9
TCACACAGACCAGCAT	alt_5710_new	16	22	21	12	17	10	22	10	23	15
CCTTGCACTTACCGAC	alt_5710_new	0	0	0	0	0	0	0	0	0	0
ATGGGTTTCAGGGTCG	alt_5710_new	12	10	15	13	12	10	14	14	15	7
TGTAGCCTCAAAAAGG	ref_5710_new	18	23	20	21	22	16	22	15	30	19
CTTTGGATAAATGCTC	alt_5710_new	40	59	42	37	50	50	63	43	52	27
TTTGCTAGGAACCATC	alt_5710_new	35	53	47	51	66	39	67	31	49	49
ACTAAATGTATCGATT	ref_5710_new	0	0	0	0	0	0	0	0	0	0
ACTAATTCGTGGTACG	alt_5710_new	0	0	0	0	0	0	0	0	0	0
GGGACATCCTAATTGT	alt_5710_new	5	5	0	1	4	1	8	1	11	0
TATGGGCCTACCGAGC	alt_5710_new	4	5	2	3	0	3	2	2	4	2
CGTTCGTTATACCAGT	alt_5710_new	10	14	10	11	19	9	15	3	23	7
TTCGTGGAGCACTGAA	alt_5710_new	48	72	59	64	68	58	68	47	84	49
TACGCTATTCTTAAGT	alt_5710_new	0	0	0	0	0	0	0	0	0	0
ACTTCCGCCTATATAT	ref_5710_new	31	51	54	38	52	38	70	50	60	44
TCAATTGTGCCGCCAT	alt_5710_new	99	124	95	103	98	77	119	89	144	75
ATCAGGCAGTGCTCTC	ref_5710_new	16	22	24	33	22	19	21	17	26	16
GCGAACTACCTACTAC	alt_5710_new	24	39	22	17	40	15	41	21	37	17
AACTTGACGGGTATCG	alt_5710_new	9	24	22	7	24	23	25	22	21	11
TGTCTGTTCGCTGCTG	alt_5710_new	22	18	9	10	22	16	25	25	28	11
CTGCGTGTATCTGGGG	alt_5710_new	19	18	15	6	8	14	28	9	18	9
CGCTCGTCGTAATCTG	ref_5710_new	8	7	5	8	6	4	0	4	4	4
TCGGCCCATTGCCTCT	alt_5710_new	0	0	0	0	0	0	0	0	0	0
AGCAGTGTCCACCTGG	alt_5710_new	56	79	80	42	62	66	66	50	87	61
GACTTAAGTCCAGGTG	alt_5710_new	3	17	3	5	10	5	14	8	8	5
TGCCAGAACGTCTCGC	alt_5710_new	10	19	16	8	33	12	21	10	20	10
GGCTATGTTTTTTTGT	alt_5710_new	29	66	62	61	58	45	55	30	74	31
CATTAGGGGACATGAA	alt_5710_new	122	211	149	117	183	116	178	97	195	105
GGCGGCCAAGTACGGA	alt_5710_new	58	55	84	56	60	46	66	57	77	49
GTTCGTCAGTGAACTT	alt_5710_new	71	86	112	69	96	56	104	72	99	72
CTGGAGTCGTTATAGT	alt_5710_new	9	12	6	3	12	10	19	4	11	8
GAGCGCAGTCTCCAGA	ref_5710_new	0	0	0	0	0	0	0	0	0	0
AACTATCGTTTTGGTT	alt_5710_new	15	18	15	10	15	14	8	7	12	10
CATTTAGGTTTGGGTC	ref_5710_new	34	55	34	20	42	37	42	32	51	24
CTTTCTCGCAATCTAT	alt_5710_new	5	11	15	7	4	5	4	8	4	4
AACAAAACAACGCTTT	ref_5710_new	0	0	0	0	0	0	0	0	0	0
GGGCGAACTACATGTT	alt_5710_new	60	83	72	69	88	63	90	52	89	65
TTCCCACGCCATTTTA	alt_5710_new	31	26	26	21	26	26	28	18	30	32
TTTAGCCTGCATCATT	ref_5710_new	0	0	0	0	0	0	0	0	0	0
ATTAATTGTCATGTAC	alt_5710_new	0	0	0	0	0	0	0	0	0	0
AGCTAGATCATGCTCA	alt_5710_new	11	9	11	5	7	8	21	3	8	8
TCTACCCCTGGCTTAC	ref_5710_new	15	30	30	25	29	31	30	18	25	19
ACAGGTGATGATCATA	ref_5710_new	0	0	0	0	0	0	0	0	0	0
TATTCCAGGTTGTAAA	alt_5710_new	76	102	85	82	99	65	112	67	104	72
GCCGGCGAGTGTGTTT	alt_5710_new	24	48	49	40	62	26	44	32	50	23
ATAACCATCGAGCATT	ref_5710_new	0	0	0	0	0	0	0	0	0	0
GTAAATGTGACATTAC	alt_5710_new	25	21	22	19	32	20	34	22	38	17
GAAACACTGCCGAACT	ref_5710_new	11	15	13	11	11	9	12	10	18	10
ATATACAACACCTTTG	alt_5710_new	7	10	7	4	8	7	8	1	4	5
ATTGGCGTTCTCTCCT	ref_5710_new	0	0	0	0	0	0	0	0	0	0
GTGTATGAGTTTCAGT	alt_5710_new	17	8	13	11	29	17	25	13	34	15
TCTAGCTCTGGATCTA	alt_5710_new	2	4	3	4	5	2	7	6	2	0
TTACATCCGTGTACGT	ref_5710_new	4	3	6	9	3	9	6	10	6	4
GCCATAGTCTATTTTA	alt_5998_new	23	35	30	25	29	27	40	35	28	34
TAGTTACCGTGTTTGA	alt_5998_new	65	60	83	65	63	59	66	61	54	51
GGTGGTGGAAAGCTGC	alt_5998_new	0	0	0	0	0	0	0	0	0	0
GGCTCCATAGTATTGT	alt_5998_new	0	1	0	0	3	0	0	0	1	2
CATAGAAGTACTCCGT	alt_5998_new	0	0	0	0	0	0	0	0	0	0
GATGAGGTGAGTGCAG	alt_5998_new	34	31	49	42	34	37	24	33	28	28
CTACCGCTAATCACGA	alt_5998_new	4	0	4	3	15	3	18	3	11	2
AAGAGAGGCGGTTTTT	alt_5998_new	53	35	55	44	54	38	55	35	38	29
TCTAAGCTCCATCGCA	alt_5998_new	33	35	35	30	33	33	35	34	28	25
CGTACACATTGCGGAA	alt_5998_new	70	74	106	102	98	89	101	89	92	76
AGCTCTCAAGCTGGTT	alt_5998_new	0	0	0	0	0	0	0	0	0	0
TAATGTCGGATGATGT	alt_5998_new	49	50	63	57	45	49	46	46	55	47
TCTTTGCATTTGTGCA	alt_5998_new	88	143	112	101	120	98	115	94	133	85
CGAGTCTTTCTGCGAT	alt_5998_new	57	71	66	56	75	64	60	61	73	44
GTCATTTACTTACTGC	alt_5998_new	13	12	9	10	12	8	17	6	17	13
CGTTTCATTGATCTTT	alt_5998_new	14	19	16	8	11	12	19	13	17	13
CATCCTGATCTCTGGA	alt_5998_new	13	10	14	14	5	13	14	6	10	7
AATGGTAGCAGTATTG	alt_5998_new	0	0	0	0	0	0	0	0	0	0
ACCTTCTTTGCTTTTC	alt_5998_new	15	22	18	22	33	26	25	21	21	23
TTTCGCTGGGCGTCCT	alt_5998_new	83	83	92	85	73	77	102	85	99	59
TAGCACTAGATTGCCG	alt_5998_new	65	63	102	90	69	77	68	63	83	61
CTACTCGGCTGTTGGC	alt_5998_new	17	13	10	9	22	6	22	10	15	6
CCGCGGTCCCTGTAGC	alt_5998_new	0	3	2	2	1	2	2	1	4	0
GTCAGACTTGACGTGC	alt_5998_new	66	54	75	70	71	46	63	60	65	52
CAACCTGTCCCTTAAA	alt_5998_new	58	65	39	37	60	45	55	38	55	42
TTCTGTGGTGGTAGAT	alt_5998_new	94	116	126	83	107	87	110	90	103	81
CTCTGGAGGATCGGGC	alt_5998_new	0	0	0	0	0	0	0	0	0	0
GTCCTATTGGTGTCTT	alt_5998_new	10	13	26	21	17	10	16	9	25	10
CAAGTTAGCGTATAAT	alt_5998_new	11	10	5	10	7	5	5	17	11	9
GTAATTTCTCCGTTTT	alt_5998_new	0	0	0	0	0	0	0	0	0	0
GTGGGCTTTAAGGTAG	alt_5998_new	0	0	0	0	0	0	0	0	0	0
TCGTCGTGCTTCTCAT	alt_5998_new	0	0	0	0	0	0	0	0	0	0
GTTACAGGTGTATCGA	alt_5998_new	6	4	5	3	10	5	3	3	8	4
ATTGCTCCTTCATCCC	alt_5998_new	62	54	93	56	66	74	79	58	52	64
GTTGTAGCTAAGCTCA	alt_5998_new	0	0	0	0	0	0	0	0	0	0
TCTTACTCGCTCGGTC	alt_5998_new	0	0	0	0	0	0	0	0	0	0
GATCAAAGGCCTTGCA	alt_5998_new	31	21	37	25	23	37	33	35	17	20
ACGCATAATGGGAAGC	alt_5998_new	31	40	63	51	56	35	45	43	53	32
CACTGTGGGCGTCGTA	alt_5998_new	55	68	64	79	77	58	81	49	72	50
ATTGCGATTGGTCTTG	alt_5998_new	0	0	0	0	0	0	0	0	0	0
GGGCCGGAACCTTCTC	alt_5998_new	5	4	8	4	8	3	2	5	10	6
ACCCGGACTATTGGAT	alt_5998_new	80	53	61	43	70	50	89	46	63	65
GGCTTGCATGGAGGTC	alt_5998_new	17	9	18	10	17	12	14	13	13	5
ACATCTTATAAAGGGT	alt_5998_new	11	14	14	13	15	7	12	9	19	15
CCCCAGGTCTCCAAAC	alt_5998_new	2	1	1	1	1	1	9	2	4	3
TCCTGTGCAGGTGGCA	alt_5998_new	14	19	23	19	15	18	22	14	19	10
GACGGAAGACATAGAG	alt_5998_new	9	6	8	4	8	13	9	5	8	8
TACCGGTGTGAGATCT	alt_5998_new	0	0	0	0	0	0	0	0	0	0
ATTCATAATCGCCTCC	alt_5998_new	2	9	15	5	8	3	3	4	5	2
CATCGTGCTTTAGTTT	alt_5998_new	0	0	0	0	0	0	0	0	0	0
CATCGCTTGGGTTCCC	alt_5998_new	17	29	21	25	25	18	13	23	21	11
TTCGCTTCCCTGTATG	alt_5998_new	32	27	33	19	49	27	38	24	43	29
GCGGCAAGCTCATTTA	alt_5998_new	41	42	50	40	38	38	35	54	39	45
CTGACTTAACTTATCA	alt_5998_new	14	30	15	27	15	26	26	29	16	20
GAACGGAAGCTCTTCG	alt_5998_new	0	0	0	0	0	0	0	0	0	0
CCCATTGGATCCGTGA	alt_6087_new	7	25	11	8	28	10	11	4	25	8
TTGATACTATGCCCGA	alt_6087_new	1	2	0	1	2	0	5	4	3	0
TCGATATTACGTGTAA	alt_6087_new	6	30	19	7	19	14	24	14	21	17
GGAGGCATTCGCAATC	alt_6087_new	18	27	28	22	35	24	41	21	33	15
GACTATTTATTAGGAA	alt_6087_new	10	16	20	13	28	12	29	8	21	15
TTCATCCGCTTCTGGG	alt_6087_new	29	64	50	42	59	15	53	31	58	29
CCAGAGTGTGACACGG	alt_6087_new	37	76	56	36	94	49	99	29	102	34
CATTCTATGGTATTTT	alt_6087_new	84	141	91	80	155	71	154	71	180	69
TTTCGTAACCCCCTTG	alt_6087_new	24	39	11	19	58	11	61	9	40	12
TACTGAGCAGGTCATT	alt_6087_new	52	106	70	50	105	58	85	52	97	46
AAAAGCTTAGTGCTGA	alt_6087_new	10	11	15	5	13	5	15	11	17	8
GTTAGGAACTCCTTTG	alt_6087_new	3	1	4	3	0	0	6	2	2	0
TCCGTAAGGTTCGGAC	alt_6087_new	19	51	23	24	43	22	50	21	51	19
TTCCGTCTCCGCAACG	alt_6087_new	24	28	26	23	38	22	31	19	38	19
GCTATTTTCTATCTCG	alt_6087_new	0	0	0	0	0	0	0	0	0	0
TCTCGCGTGCTTTTGG	alt_6087_new	53	94	61	46	84	57	104	54	131	37
TATGATGGTACTTCAG	alt_6087_new	57	86	44	53	103	39	82	41	87	51
CGTTAATCAATGTCTT	alt_6087_new	1	2	2	3	4	2	8	0	5	1
CAGCACGCCGGCCAAC	alt_6087_new	24	44	22	25	45	10	41	18	41	17
GTTTGCCTTCCCCCAC	alt_6087_new	3	11	4	4	7	8	20	7	10	8
ACTATCTGTATAGCTA	alt_6087_new	110	229	131	119	212	99	217	110	252	117
ATCTTTGTTAGGGGTA	alt_6087_new	5	22	11	12	14	9	19	5	15	3
ACGACGTCCCCGCCCA	alt_6087_new	0	0	0	0	0	0	0	0	0	0
CCGCCCCTTTCCTTGA	alt_6087_new	7	10	7	2	12	1	7	4	12	9
TCATGACTTTTGTCTG	alt_6087_new	23	27	12	9	29	13	24	8	30	11
CACTAGGTTCCACCGA	alt_6087_new	11	32	31	12	63	10	23	20	29	11
ACGACGTCCCCGACCA	alt_6087_new	57	281	53	43	281	29	287	47	272	32
TAGTATTTGCGATGGT	alt_6087_new	75	87	66	50	102	41	100	48	84	44
GCGAGGCCTCCGGGGT	alt_6087_new	1	5	3	0	2	4	6	0	6	4
CGTGAGGTAGGTGTCT	alt_6087_new	0	0	0	0	0	0	0	0	0	0
CAATGGCGCATTGTAC	alt_6087_new	1	5	3	1	1	2	5	0	2	0
AGATTAGACGCTGGAT	alt_6087_new	0	0	0	0	0	0	0	0	0	0
GACCATGTTACCAAGA	alt_6087_new	7	5	10	1	13	6	5	1	9	5
TAGCCGGTATCGGAGT	alt_6087_new	20	63	38	35	70	26	85	24	78	19
TATTACGAACCGTTAG	alt_6087_new	22	37	25	31	31	16	35	23	39	18
TCATCGTTCAGCTTTG	alt_6087_new	0	0	0	0	0	0	0	0	0	0
AACGGAGTTTTTTGCA	alt_6087_new	28	61	40	41	51	35	56	24	61	24
TGTAGTGTTAATTACA	alt_6087_new	0	0	0	0	0	0	0	0	0	0
GTCTTCATATTCGTCG	alt_6087_new	117	202	142	99	208	111	196	109	213	100
ATGTTTTTGCTGTGAG	alt_6087_new	13	31	20	14	33	15	24	11	23	12
TTATCTAGGCACACCC	alt_6087_new	0	0	0	0	0	0	0	0	0	0
ATCCGGTTTACCACAG	alt_6087_new	0	0	0	0	0	0	0	0	0	0
TAACGAAAAGCGTCAT	alt_6087_new	0	0	0	0	0	0	0	0	0	0
TGCGATCTATTGAAAA	alt_6087_new	0	0	0	0	0	0	0	0	0	0
GTAAGCCTTGTACTAC	alt_6087_new	1	1	1	0	0	0	0	1	0	0
AGGATTCCTTCAAGGT	alt_6087_new	87	147	97	95	153	85	159	92	165	79
ATGTTTCGACAGGTTA	alt_6087_new	33	46	46	22	53	20	55	16	53	25
GGCGTAACCGGTCTAA	alt_6087_new	9	28	19	8	26	12	24	6	31	5
CCAGGCCTGTCGGAGT	alt_6087_new	18	58	9	31	53	15	53	15	59	18
AGAAATAATCTAGAGA	alt_6087_new	0	0	0	0	0	0	0	0	0	0
AATGGCGTCATTCTAT	alt_6087_new	18	29	24	22	19	10	16	23	33	28
TCATGACAGGGAAGAT	alt_6087_new	0	0	0	0	0	0	0	0	0	0
TTACGAACCAACACAA	alt_6087_new	1	7	1	2	9	3	4	2	11	2
GACCGCCGATATAGTC	alt_6087_new	16	24	17	14	32	13	39	7	32	9
AGGATAACCTGGTTTC	alt_6087_new	0	0	0	0	0	0	0	0	0	0
TTCGGTGCCGTTAAGG	alt_6087_new	13	35	18	10	39	15	30	18	28	17
GGATGCAGCTTTCGTT	alt_6087_new	54	98	84	60	115	67	121	55	103	59
ACGTGCTCCTGTTTCT	alt_6087_new	96	134	104	123	156	94	169	93	168	88
GCAAGACCCGCGCCGC	alt_6087_new	0	0	0	0	0	0	0	0	0	0
GCCCTTCAATGTCCTG	alt_6087_new	24	66	35	35	59	32	50	23	70	38
GCTGCTACTTCTTCCG	alt_6087_new	0	0	0	0	0	0	0	0	0	0
CTCATACCGACAATTT	alt_6087_new	34	49	28	26	53	28	45	27	70	26
ACTTCTAGAACAGTTG	alt_6087_new	0	0	0	0	0	0	0	0	0	0
TGCTGTTATCCGTCTG	alt_6087_new	18	29	19	25	36	14	39	17	39	17
GCGGCTTCTCTGACTG	alt_6087_new	4	6	4	4	1	7	7	3	16	4
CGGTTTTGCACATGAA	alt_6087_new	8	7	5	7	8	6	12	2	9	3
GGTATATCTGGGCAGG	alt_6087_new	7	8	10	18	15	9	8	2	12	3
ATATGAAACCGCTATG	alt_6087_new	0	0	0	0	0	0	0	0	0	0
CTTTAAATTCGCATAA	alt_6087_new	11	28	24	9	26	18	23	12	29	11
CCATGGAACCTAAGTC	alt_6087_new	0	0	0	0	0	0	0	0	0	0
CTGTTGGCAGACCCTT	alt_6087_new	46	59	52	51	71	34	59	36	69	34
ATGCTTCGTCCCATGC	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
ACTTTACTTCGAGGTC	alt_4446_RC	10	8	11	8	4	5	10	12	6	4
GTGGTGTTTTGACCAG	alt_4446_RC	32	36	45	40	29	34	29	37	31	31
ACGCCTAGCGAGACTC	alt_4446_RC	34	46	42	31	48	40	45	32	49	40
AGTCCAGGGGTATTCA	alt_4446_RC	37	30	37	33	32	24	38	40	39	36
CTGCTTACGTTATGTA	alt_4446_RC	123	114	153	141	149	140	142	121	139	112
TATATCGCACTATCGC	alt_4446_RC	19	29	22	25	23	20	22	18	23	21
GCCAGGTGCAACACTT	alt_4446_RC	87	111	89	99	123	80	96	95	102	82
CAGTTTTTTTGATACA	alt_4446_RC	56	54	45	58	61	35	49	42	42	53
GTATGTCTTCATTCGT	alt_4446_RC	3	6	2	2	4	3	3	3	3	2
CCACAGGAAGACCATG	alt_4446_RC	84	92	110	75	86	80	97	79	109	66
AGGTCTGCGGGTTCTT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GGCTGAAGAAAACACC	alt_4446_RC	190	135	219	159	182	182	187	177	186	157
TATAAGACTCAAGGTT	alt_4446_RC	85	88	126	82	91	79	92	96	118	80
TTTAGCAGTAGTATAT	alt_4446_RC	7	7	10	8	3	8	4	8	7	2
GCCATCACCAGTCAAT	alt_4446_RC	19	29	42	40	32	24	32	33	40	37
TGATTTTTGGCGTGGT	alt_4446_RC	71	81	92	102	93	84	80	71	81	65
GGGAATCTATATGCTG	alt_4446_RC	27	40	61	42	28	33	30	42	43	30
CTCAAGCGTCCTGAGG	alt_4446_RC	36	39	17	24	34	35	37	29	35	35
CGCCCCTATCATGTTT	alt_4446_RC	17	21	28	26	17	18	31	24	36	17
TCGGCAGTCCACGAAC	alt_4446_RC	59	65	72	74	75	72	96	57	81	65
GCTACACAGATTGTCT	alt_4446_RC	100	138	107	81	122	66	135	62	142	70
CCTGTTCTAGTTTGCA	alt_4446_RC	30	38	25	30	42	19	26	23	31	19
TGCTCCGAAAGTCTCT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TTAAGGACTATTTCCG	alt_4446_RC	3	9	2	8	12	1	5	3	6	1
CTTGGTCCTCGTGTTC	alt_4446_RC	105	96	122	110	86	83	103	92	90	76
CTTGGGGCGTCACTTT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GGCACAGTCCATGCGG	alt_4446_RC	13	8	13	20	12	11	8	11	14	8
GTACTTGCGCAATTGT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
CCAATACTTCCTGCTC	alt_4446_RC	44	25	39	14	19	19	33	21	18	10
TGTGTCCGATAGCCCG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
ACGGCGGCCTTGGGGC	alt_4446_RC	44	41	55	49	49	48	59	49	62	47
GTGTTCTCGTTAATCC	alt_4446_RC	19	9	11	18	16	12	16	20	20	4
AAAGGCAGATATCGTG	alt_4446_RC	36	20	30	29	19	24	31	30	22	18
CATATGTTGTCTCGTC	alt_4446_RC	15	26	23	19	30	9	24	17	18	10
TCGGGTCCTGCAGCCG	alt_4446_RC	26	17	39	40	14	26	27	33	28	24
GTCCCTCGTATTATCT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
CCTTCTACTTTGCCGT	alt_4446_RC	31	41	61	42	48	33	56	34	39	40
CTACGCAACCACGCCG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TCTGTAACTTCCAGGA	alt_4446_RC	39	38	42	39	35	37	43	34	39	28
AAGCAGTTTAGCTCGC	alt_4446_RC	8	2	9	9	3	9	4	8	11	9
TTAGGCTGTCCTTATA	alt_4446_RC	191	154	198	194	143	177	138	176	170	155
TGGAGTTCCAATTCAG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
AGTGTGATTTGGAAAC	alt_4446_RC	13	31	23	21	12	19	18	19	17	20
TACCAGTTGGTTCAGC	alt_4446_RC	36	21	36	36	27	22	29	29	31	37
CCTCTGTCTCCGGAAT	alt_4446_RC	7	10	11	4	15	8	17	10	21	5
CCTTCCATATAGCCGA	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
CTCAGCTGTCATACAG	alt_4446_RC	2	5	2	1	3	2	2	1	1	2
CTTTCAGAGCAGAAGC	alt_4446_RC	29	16	22	28	12	24	22	16	28	16
AACTACGTTCTTTTCG	alt_4446_RC	40	53	35	33	54	36	55	27	73	41
GTTATAGCAATCGTAT	alt_4446_RC	31	22	29	22	22	19	24	22	21	15
TGAGACCAATTAGCTT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TGGTTGCCCGTCCAAC	alt_4446_RC	31	34	40	32	22	32	26	43	42	29
CTTTGCTATTGTGTGT	alt_4446_RC	16	12	16	9	9	9	15	14	15	7
GTGCCCTCATTCAGCC	alt_4446_RC	21	6	13	14	11	13	14	12	10	3
TTGTGTGTGTTATTTT	alt_4446_RC	44	35	41	41	36	37	38	56	37	35
CGGGCGGTCCGGTCCA	alt_4446_RC	46	32	49	46	45	43	31	51	37	40
CTTGCTTAGCGTATTT	alt_4446_RC	23	20	25	16	24	26	31	17	33	15
TGTCCTGCGCCGTTAT	alt_4446_RC	37	27	38	50	39	37	20	30	32	37
TCGCGGAGGTATACTC	alt_4446_RC	35	30	34	28	37	25	36	21	30	32
AGCGCGCACAGACACC	alt_4446_RC	1	1	3	7	1	0	1	0	6	1
CGTCTTCTAAGCCCAC	alt_4446_RC	8	10	8	3	4	4	5	9	10	4
GGCTTATCACTTGTAC	alt_4446_RC	52	53	68	65	82	56	56	67	53	53
CACTTAACGTATCTAG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GCGGCATGGAGCCAAG	alt_4446_RC	54	54	82	63	40	65	61	63	50	47
TGTCCATCCTCTCGTC	alt_4446_RC	12	13	22	13	15	21	12	11	11	11
GTGTGATATCCCTGTC	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
CGGAGGCTCAACATTT	alt_4446_RC	153	154	185	198	152	162	149	149	180	138
CGTCCGGCAGTTTCCG	alt_4446_RC	13	14	21	18	10	13	14	12	16	9
GAGCAAGTTCTCCTAG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TAATTTTCATTCTATG	alt_4446_RC	168	134	171	179	142	147	135	140	155	123
CAGACTAACTCGTAGG	alt_4446_RC	3	14	3	8	5	9	5	8	1	3
ACTTTATTGCTCTAAA	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
AAGACGTGTTTTAATA	alt_4446_RC	13	17	10	9	18	8	11	2	11	9
ACGATCACTCTAAAGC	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TTTTAGTTCTCTACCT	alt_4446_RC	34	37	54	32	31	47	38	48	33	33
GTTCCGCTTTTGATTG	alt_4446_RC	117	142	137	128	159	89	152	124	176	113
TTGAGGTTTATTGGTC	alt_4446_RC	124	123	152	153	122	158	143	129	153	90
CATGAGGCGACGTACC	alt_4446_RC	44	36	51	34	28	39	41	40	35	44
TAAGCGTTCCGGTGTT	alt_4446_RC	20	12	27	13	13	15	10	9	18	10
GATCCCTAGACAGTGT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
ATGCGCCAGCGAACGT	alt_4446_RC	63	64	87	55	57	43	82	37	66	49
ACACCCGCTGATAGTG	alt_4446_RC	28	22	29	31	18	30	31	31	22	34
GTGTGTCTTGTGGATG	alt_4446_RC	15	24	20	18	34	21	25	17	48	17
GGATCCATTGTTTGCT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GCATTTCTGTCTAGAT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GTCTTTGGCGGAATGC	alt_4446_RC	61	60	51	72	51	63	60	46	73	68
TCTCTCCAAGTTGTGT	alt_4446_RC	21	29	40	31	12	33	34	20	27	18
GCACGTAATGCGATTT	alt_4446_RC	51	36	72	73	68	62	66	48	69	76
CGCGGCACATACATGT	alt_4446_RC	18	8	22	18	21	15	11	15	11	16
CTGGCTGGTGTATTTA	alt_4446_RC	40	27	40	36	39	25	41	30	42	36
TCTCAATTGTATTCTG	alt_4446_RC	11	12	22	15	10	11	22	11	15	12
GCACTATCAGTCGGAG	alt_4446_RC	170	178	196	169	211	177	212	173	166	157
TAAATTCTCAGAGCTC	alt_4446_RC	18	21	15	21	12	23	9	27	13	6
AAAATTTGCGTTAATT	alt_4446_RC	23	35	27	22	31	29	23	34	23	28
CCTGACGGCTACTGGA	alt_4446_RC	4	4	1	4	2	2	1	5	6	2
CGGATTATCGAGAAAG	alt_4446_RC	12	13	11	10	7	8	17	7	12	7
GTATTGTTCTCCAAAT	alt_4446_RC	8	14	20	14	16	19	17	15	19	13
GTTAAGAGCCTCCACC	alt_4446_RC	134	165	189	159	177	118	146	159	136	125
TCGGTCTTTCTCTTTG	alt_4446_RC	1	7	3	3	7	5	2	6	3	2
TGTGATTCACTCCGAT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
CCTCACGGGGATCTCA	alt_4446_RC	82	122	157	122	116	116	134	113	104	109
TACCGATCCTTTCGAG	alt_4446_RC	60	80	84	60	49	46	104	55	98	50
ATGGGCCAACGCATAG	alt_4446_RC	78	104	118	102	86	91	119	71	128	96
AGATATTGTATAGAGG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TAACTTAGGGAGAAGC	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
CAGTGTCGGACTCCCT	alt_4446_RC	25	17	22	23	21	11	22	19	28	9
GCTTAGCCGGCGTGGT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GTTAAGGAGAGTAGCG	alt_4446_RC	233	209	291	258	198	252	237	190	256	174
CCCGTTGCCGGCTGCT	alt_4446_RC	26	17	31	18	22	25	24	21	33	26
TCCCTCAGAACTCCCC	alt_4446_RC	69	70	68	62	76	62	96	49	76	37
GGTCCTACTCGGAAAT	alt_4446_RC	126	130	185	126	143	121	125	154	125	143
TTCATGAGTTGCGTTT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GAAAAATGCAAGGTCA	alt_4446_RC	29	12	23	23	17	26	17	26	24	34
CCAGGGATCAGCTACT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GTCAGAGTCAAACTTT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
ATGTTTGTCACGCTTG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
ATTCTATGCTGAAATT	alt_4446_RC	59	61	76	62	58	61	58	48	58	47
ACTGGCAGAGAATCAT	alt_4446_RC	99	88	112	111	80	104	77	86	98	83
CGACTCATGTTTTATG	alt_4446_RC	18	15	12	11	13	14	15	13	14	10
TGGTCTTCTGTCCAAT	alt_4446_RC	91	60	60	80	77	81	55	63	79	63
CAGTCCATGCCCACGG	alt_4446_RC	113	98	132	111	102	104	113	108	140	98
GCGTGTCGGCAAGCAC	alt_4446_RC	12	7	11	9	12	10	8	12	16	10
TCTAGCGTCTGACTTT	alt_4446_RC	35	40	38	29	39	29	39	30	39	18
GCCTGCGTTACATGCA	alt_4446_RC	29	39	34	45	28	31	47	22	37	29
GCCTGGAAGGGTACCT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TTTTTAGTCGAGGGCC	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
GCGTTGACGCTATCTA	alt_4446_RC	84	74	101	67	66	78	115	57	80	62
GCCACTATGCACACGT	alt_4446_RC	8	5	6	6	3	10	6	3	16	9
TGGAAGGTTAGTTATT	alt_4446_RC	77	48	82	60	76	89	74	55	50	73
AGACTTATGGCGGCTT	alt_4446_RC	14	16	32	18	9	18	24	20	12	23
GATGTTGCAACGGCTC	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
TTGCGTTTCCGGGAAG	alt_4446_RC	52	55	53	47	45	47	52	51	58	45
ACTATTCCGGTTATGA	alt_4446_RC	24	29	29	28	34	29	29	36	22	26
TCTTCCACATTATATC	alt_4446_RC	20	26	26	28	26	31	28	22	21	18
ATTATCTCTTTTGCTT	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
AAATTACTTTAATAAT	alt_4446_RC	48	47	68	65	47	52	55	65	51	54
ACCATTGGGAGCAGTC	alt_4446_RC	23	32	30	31	36	23	24	35	39	31
TCACGCTCCCCGAATC	alt_4446_RC	2	27	1	2	29	1	36	2	25	0
ATGGCTAGCTGCTTTA	alt_4446_RC	73	51	83	78	58	47	53	58	60	72
ACTCAACGGTGGGTTG	alt_4446_RC	89	84	131	89	92	97	85	80	100	81
GCCTACATACTCTCGT	alt_4446_RC	0	4	3	2	2	3	0	2	4	3
GGTTGCCATTGGATAG	alt_4446_RC	0	0	0	0	0	0	0	0	0	0
CGCCCTGTCGGAGGTT	alt_4446_RC	59	85	45	64	87	46	50	51	71	47
GTCAAGGTTTTATTTT	ref_5635_new	1	6	5	3	8	9	6	4	4	0
CGGCACGTAAATCGAC	ref_5635_new	10	26	19	9	29	10	22	14	25	9
GGCCGAGAGAGATCTC	ref_5635_new	3	10	5	7	9	4	2	9	10	4
GCTTTCGTAAGCTCAT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CTTTCCATTATGGAGT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CCGTGTGGTTTCTTCG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TGCAACTTCTTGCCTC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TTATTGGCAAATCGGG	ref_5635_new	6	18	5	8	13	12	11	10	12	11
TCAGGGCTCTACGGTC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GCTTTACGTTATGCCT	ref_5635_new	32	50	61	37	62	40	65	40	41	45
GCGGACTTATTTAATG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
AATTCCTACTCTATGG	ref_5635_new	33	55	39	31	61	22	51	27	45	45
GAATACTTTCGTTCAG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GTCTCTGCTTTACAGC	ref_5635_new	29	43	38	23	42	28	63	26	47	33
CTTGTACTGGAAACGG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GCTACATTTTTTTCGA	ref_5635_new	12	10	10	11	27	11	19	15	19	10
CTATGAGCTGAGATCC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TAGAGTTGTTCTCCGT	ref_5635_new	90	144	122	106	127	84	188	73	145	73
GTCGATCCTGGGTTGA	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CATCAAGTCTCTGGGT	ref_5635_new	18	34	14	12	44	16	39	14	27	23
CGTTGCACACTGGAGC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GTTCAAAATCCCTATC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CCCCGAGCCACATGCC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TTATAATCCTACCTGT	ref_5635_new	14	41	23	9	58	16	45	11	59	14
GGACCCGACTGTGAGC	ref_5635_new	11	23	26	15	42	10	33	12	41	21
ATTTCAAGACGAAGCT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GAGATGCATTGGTTTA	ref_5635_new	0	0	0	0	0	0	0	0	0	0
ACTCAGCTCAAAGGTT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TTTGTCTTGGCCGCGG	ref_5635_new	9	5	10	15	11	12	12	2	7	5
CCTGGTAGGCCGGCTC	ref_5635_new	15	22	15	18	16	11	20	23	21	10
TTGTGGAACTATCAAT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
ATAGTTCATGGGGTTA	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GCACACTCGTCACTAA	ref_5635_new	19	47	17	21	53	24	68	16	58	7
TTTAGTGAGCGATACG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
ATACCCGATTTATATT	ref_5635_new	49	56	38	33	71	45	66	41	58	39
TTGGATCATCTCTTAT	ref_5635_new	53	63	60	46	77	44	66	44	62	34
CTGACACTCGAGCTGG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GTTTGTGTTGTTAGAG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CCCGCTTGTTGTACCG	ref_5635_new	10	40	12	15	49	15	38	6	48	9
CTCAATAGACTGCCCC	ref_5635_new	10	25	10	4	20	7	19	6	22	10
TGCTTATTCAAAATCG	ref_5635_new	32	59	42	22	39	21	45	25	43	30
CTTTTCATTGACGTCA	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GCATGTGAACCTATGA	ref_5635_new	11	16	9	20	10	7	9	4	18	9
GACTGGACGCCATCTT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TCCTTTTGCCTCTTCC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GAGCTTATTACCTGGT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
GGCAACGGGTAACAAC	ref_5635_new	1	4	0	0	3	3	7	1	6	1
TATCAATGACTGCTAC	ref_5635_new	12	27	15	19	30	21	25	21	32	11
TACTCGGTGTAATAAA	ref_5635_new	15	37	31	18	37	18	34	26	43	20
CCACGGGACTGAGAAA	ref_5635_new	0	0	0	0	0	0	0	0	0	0
ACTGTCTTACTAATTC	ref_5635_new	39	68	38	41	48	48	70	37	79	28
TATATTGGGTTAATGG	ref_5635_new	23	19	17	9	32	23	21	13	24	11
ATTAGTAGCTCCTCTT	ref_5635_new	0	0	1	1	3	0	2	1	4	0
TCAAATGTTTGTGTTT	ref_5635_new	5	10	3	1	7	6	7	4	14	4
CGTAAGGTCACCTGTC	ref_5635_new	0	0	0	0	0	0	0	0	0	0
ACCCGCTCAACAATTT	ref_5635_new	1	0	0	0	0	0	0	1	0	0
TCGCTGGTACTGACGA	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TGGCCTGCCCCCAGGT	ref_5635_new	2	1	0	0	1	0	0	0	2	0
CATTCTCAGTGGGGAG	ref_5635_new	0	0	0	0	0	0	0	0	0	0
TGCATTGTGTGTTTCT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CGCAATTTAGGTGTGC	ref_5635_new	40	83	47	56	64	51	73	49	89	27
CGCATATCCACTTTAC	ref_5635_new	11	20	15	9	15	4	18	8	21	10
TCACATGCCTCATTAG	ref_5635_new	8	8	7	4	7	4	13	6	8	5
CCACCGTTCGCCCACA	ref_5635_new	5	15	8	7	17	7	21	7	13	3
CTGTGTTCTGCGGTTA	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CAGTCTCAACTCTTAG	ref_5635_new	15	17	14	12	19	14	22	13	27	9
TACTTCTTTTCGAGTT	ref_5635_new	0	0	0	0	0	0	0	0	0	0
CAAGCTGCCTTTCTCA	alt_2482_missing	10	14	2	5	13	10	8	5	12	3
CCGACGATACCTTACG	alt_2482_missing	0	0	0	0	1	0	0	0	0	0
AGCCGTGTTCTGTGCT	alt_2482_missing	8	53	14	17	33	15	39	15	36	11
ACTGGAATTCTGGTCG	alt_2482_missing	3	12	8	4	11	5	13	1	11	1
CTGAGAATGATAGAGT	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
TCTTTTCTCCGGACGA	alt_2482_missing	72	115	82	87	149	63	151	75	149	75
GCTGGGGAGTTATATC	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
GGAAATGCCGTACCGG	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
GCCTACAGCCTGTTTC	alt_2482_missing	9	38	15	7	44	9	39	11	35	15
AGTACGAGCTCACTGG	alt_2482_missing	3	14	3	8	10	6	6	7	5	5
GTTAGCGCATTAGCGG	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
GACACTCTATTATCAA	alt_2482_missing	22	31	15	11	31	16	41	10	48	15
CTCTGTAAGCCACTTT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TTGTACTGTCTTCGAA	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
CCCGAGGTATGTGATT	alt_2482_missing	7	21	8	16	35	6	23	4	31	8
CTATCCTTGTATATTG	alt_2482_missing	1	6	2	3	5	4	4	5	3	3
ATAATTCTAGAACAGT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TGTAACTTGTATCTGA	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TGCTGGTTATTTTGGA	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCCACCACGCCT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TTTCTCACCGGTAGCG	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
CCTTGACCAACGTCCT	alt_2482_missing	9	9	8	13	20	5	22	4	17	2
TGCGTATTGGCGCTTT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TTTTATTTTTCACTGT	alt_2482_missing	14	27	10	27	24	9	17	17	26	9
CAATCTTGCTTAAAGT	alt_2482_missing	5	25	8	11	25	5	17	8	23	8
AGGGCCTTGTCAATTT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
GGTGTTGCTAAATGAT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TGGGTATCATTTCAGT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TGATATAACGGGTCTA	alt_2482_missing	8	18	4	5	15	9	17	2	13	7
TGTGGTTGCGTCGGTA	alt_2482_missing	9	31	17	14	28	6	17	12	36	15
GGCAATACGAACACAG	alt_2482_missing	27	75	39	33	76	35	74	37	61	27
AGTGCCCGCTAGCCAA	alt_2482_missing	34	81	39	31	85	29	84	36	71	40
CCTTGGTGGTAGGGTC	alt_2482_missing	6	28	10	13	26	13	19	14	28	12
TCGGATGTAGTGATTT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
CGTTTATAAATACCGC	alt_2482_missing	17	20	9	9	14	2	25	6	21	9
GTTTTTCGCTCCGAGA	alt_2482_missing	11	23	15	13	46	23	47	8	42	24
TATGTCCGAGTTCCGC	alt_2482_missing	0	4	4	2	6	6	3	2	2	2
CAATAAAGCCCATGGT	alt_2482_missing	17	44	22	16	55	24	50	16	55	17
ACGCCTCTGACTAGCG	alt_2482_missing	25	42	19	13	46	17	54	12	45	13
GACTGGTACCGTCGTG	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
GTCATGTTCCAGTCTC	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TCACGTGGTTTTGCAA	alt_2482_missing	17	31	15	19	24	11	31	4	27	10
GCAATACCGATGCAGT	alt_2482_missing	9	26	16	21	36	16	27	15	35	10
TGCGTTAGTAAGGTAG	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTAGTCGTGCGT	alt_2482_missing	1	0	0	0	0	0	0	0	1	0
ATTACTTGTAGGTTTA	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
GTAACCATCTACTCTA	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
AGCGTTGCCGTTATTC	alt_2482_missing	4	12	5	6	10	1	17	2	25	6
GACTAGTACCGTCGTG	alt_2482_missing	2	7	2	4	16	2	6	2	13	3
TGAGTATCGTCCCCCT	alt_2482_missing	27	44	31	34	51	34	59	29	52	25
GGCGTGGCAGCTCTTA	ref_2482_missing	4	8	5	2	8	7	7	4	13	3
CGTGAGCCCCGACTCC	alt_2482_missing	7	24	14	6	24	6	19	11	14	8
TTCATTGGTTTTGGCA	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
GTAGAGTACCGTCTTT	alt_2482_missing	0	0	0	0	0	0	0	0	0	0
TATCTGTTTAGCACGA	alt_2482_missing	29	56	25	16	57	19	51	30	53	21
TCGTATATTTGGTTTT	ref_5114_reverse	80	73	69	75	61	81	69	71	95	70
TGGACCTTTCAAGCGT	ref_5114_reverse	267	269	336	280	239	251	231	300	254	245
GTCATTTGTTTTGTCG	ref_5114_reverse	3	5	10	8	4	4	7	4	2	2
ATCGGTATCACTGCCC	ref_5114_reverse	119	98	137	126	99	115	108	124	108	88
CGCATATCGCAGGAGT	ref_5114_reverse	29	31	25	32	43	44	49	40	55	26
CGCTTGCGCGCCCACA	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
CCGCACATTTGGGCAC	ref_5114_reverse	1	5	1	1	3	2	5	3	1	5
TTGGCGTCACTCATAC	ref_5114_reverse	44	30	41	31	44	31	40	32	47	39
CTTGTGGACGCTTCGA	ref_5114_reverse	7	2	11	8	12	3	8	12	6	10
ATAGTCTATACCCGTA	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
GTATTCCTCGTAAAGG	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
TTTATTTAGTACCCTT	ref_5114_reverse	33	33	46	37	33	38	28	34	37	27
AGGCCCCCGCTGGCTA	ref_5114_reverse	42	42	42	50	28	47	32	33	33	40
GTTTTTCCGACTAGGG	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
AATTAGCTCGAGCATG	ref_5114_reverse	28	19	44	36	33	39	18	21	31	24
ATTTCCATTGCTGGAC	ref_5114_reverse	8	1	4	3	5	3	8	3	8	8
GCTGCAGATGTTAATT	ref_5114_reverse	31	13	13	21	16	29	26	20	19	14
GGGTGCTTCATTCCGC	ref_5114_reverse	49	26	48	28	34	30	35	39	33	34
GCAACCGTGCCTGGAA	ref_5114_reverse	21	41	42	34	45	27	36	26	31	25
TCGTTATCCATTTCAC	ref_5114_reverse	95	80	106	91	94	97	90	86	99	93
TACTCTTGGTAAGTTG	ref_5114_reverse	15	7	14	8	6	11	6	6	5	6
TATATAGGTCACCTTT	ref_5114_reverse	63	63	58	48	33	59	46	40	35	42
CTTGTTATATACCGCA	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
GACTTGATAAGCCGAT	ref_5114_reverse	7	4	9	7	9	7	7	8	9	4
TAGTTTTTCTAGTCCC	ref_5114_reverse	36	38	50	34	25	27	34	37	27	26
GACTGGGTAACGGAAA	ref_5114_reverse	22	26	24	22	20	32	22	18	20	25
TTCCGCCTCCAGTAAT	ref_5114_reverse	19	9	20	31	12	25	17	21	16	16
TTATAGGGTGTTCATT	ref_5114_reverse	99	71	123	87	73	96	61	81	79	83
TTGTTCTTATGACCAT	ref_5114_reverse	11	2	6	6	9	6	0	2	8	0
GGGGCACGACTTGGCT	ref_5114_reverse	34	31	49	42	29	27	44	29	42	24
TGGAGAGTTTTTTCAT	ref_5114_reverse	66	64	91	75	59	77	66	69	61	66
TCAATAGGTTCTATGA	ref_5114_reverse	70	49	102	84	82	80	69	83	84	74
GAATAGAGACTCGCGC	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGTAGGGAACTTT	ref_5114_reverse	10	16	18	13	10	12	14	9	13	19
GCCCCATGCAAACGAT	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
ACATTCATTTGTAAGT	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
AGTTTGTATCGTAGTA	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
CTGAATACAGGGTTCG	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTGCGCGGCTAGG	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
TAGTGGCTTTAAAGAG	ref_5114_reverse	20	13	25	16	20	20	27	18	23	17
AATTCTCAGATCACTA	ref_5114_reverse	60	54	59	71	52	44	51	53	60	49
GTCCGTCATTTCTTGC	ref_5114_reverse	9	7	16	11	12	6	20	14	15	11
CTGCGCATCATGCATT	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
CCGAGCAGTCTTAAGC	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
CGGTATTTCTCCTCGT	ref_5114_reverse	20	20	35	37	26	17	20	22	28	23
GGTTCGTTCCGTTACG	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGACAGGGTTCTG	ref_5114_reverse	15	13	11	16	12	12	10	21	16	9
TGAACTTGGTTCGGAG	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
AGGGGGCTCAACTCAG	ref_5114_reverse	22	15	39	17	24	25	30	24	28	20
TAAAGTAGGATTCTTT	ref_5114_reverse	92	69	121	89	53	80	91	112	72	69
GATTTCCTTCACCACT	ref_5114_reverse	8	10	4	9	7	14	9	6	14	7
TTACATTGTTTTTTTG	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
ATTTGCATGTAGCTTA	ref_5114_reverse	0	0	0	0	0	0	0	0	0	0
TTTAATTCGTTTGATA	ref_5720_new	8	11	7	8	3	3	11	4	8	5
GTTCATCGTCTGGTTT	ref_5720_new	6	10	11	7	14	4	7	5	4	6
AGGTTGGTCTAAGAGA	ref_5720_new	60	82	54	48	79	60	92	50	82	52
CTGTGCTAATCCGCCT	ref_5720_new	24	25	27	22	23	25	39	18	35	25
CAGTTCCTGAGAGTGT	ref_5720_new	26	33	26	28	47	29	42	22	61	33
GGCGTCGCACACCAGT	ref_5720_new	5	9	15	22	7	11	18	12	12	10
TACTGCGTGTAGTTTG	ref_5720_new	58	67	59	48	68	44	63	43	59	32
TGTCTCCCCCATGATA	ref_5720_new	104	102	96	77	119	61	121	94	130	85
CATGTAATACACTTCA	ref_5720_new	51	74	57	54	59	49	72	43	83	44
ATTCCTATGTAAGGCT	ref_5720_new	25	22	23	19	48	27	35	16	36	25
TCAATGAATCCAAGCG	ref_5720_new	76	71	78	66	109	68	83	62	89	64
CTCTGGCCGCCATATG	ref_5720_new	0	0	0	0	0	0	0	0	0	0
GGTAGTCTCGACTCTG	ref_5720_new	23	31	15	15	27	18	33	16	27	13
TCTCGAATGCACTTAC	ref_5720_new	10	53	19	23	57	10	44	5	60	11
TCTTTATGGTAGCCTT	ref_5720_new	8	8	10	3	13	5	12	9	4	5
TTGTTGGGGGGAAGTT	ref_5720_new	45	54	41	40	42	37	48	36	63	23
TGTCTGAACAATTATG	ref_5720_new	3	6	5	1	5	2	5	2	5	3
AACGCCTCCGATTTAG	ref_5720_new	49	72	55	51	52	57	69	30	75	24
TATAGGTGTGCCGAGC	ref_5720_new	0	0	0	0	0	0	0	0	0	0
GACGCTCATACCAAGT	ref_5720_new	106	118	134	103	151	108	131	99	137	100
GAAGGCTAACTCTGCC	ref_5720_new	0	0	0	0	0	0	0	0	0	0
TTCGTCATTAAGGTCC	ref_5720_new	32	29	37	36	28	19	36	25	33	22
TCGTCCATCGTCTTAA	ref_5720_new	56	105	73	57	126	53	108	52	140	51
TATAATAGAGCACCCT	ref_5720_new	0	0	0	0	0	0	0	0	0	0
ACTCCTACGTTAGAAG	ref_5720_new	8	88	10	15	105	13	104	14	129	14
GCGAGGCGTGACCTAT	ref_5720_new	17	29	19	16	27	16	25	20	29	28
CCAAGAATCATAGCAA	ref_5720_new	1	0	1	2	2	0	2	2	2	3
CGTATCTTGATCATAT	ref_5720_new	45	75	60	83	60	80	76	62	72	38
TTGAATGATTGCTTAA	ref_5720_new	97	144	104	98	187	116	181	95	172	101
CTGCTGTGTTCATTGT	ref_5720_new	55	69	59	57	43	41	67	40	63	52
CTCTTCATGATGAAGC	ref_5720_new	8	26	9	9	34	13	28	12	24	6
TCAAATTTACTCTGAA	ref_5720_new	0	0	0	0	0	0	0	0	0	0
CATTGGTTACTGTATC	ref_5720_new	33	48	40	22	43	26	45	34	38	18
CCTTCGTAGGACAAGG	ref_5720_new	51	89	74	55	94	46	89	56	88	48
CTCTCGTACAGTGGGA	ref_5720_new	14	35	23	12	41	8	31	22	22	23
GTAGTACTATTTATAC	ref_5720_new	0	0	0	0	0	0	0	0	0	0
GCGTGCAGATGTAGAC	ref_5720_new	46	71	67	47	82	52	77	43	113	58
GTTTTTGAACAGGCAA	ref_5720_new	0	0	0	0	0	0	0	0	0	0
CTAAGCAAATTTCTCA	ref_5720_new	22	30	27	21	27	28	29	19	27	15
CAATACCCGGTCCTAT	ref_5720_new	60	97	74	54	118	62	105	60	123	63
CGATTGCTTGTTCCTG	ref_5720_new	27	52	45	39	35	32	52	29	46	20
CGTCGGTTTTATCCTA	ref_5720_new	16	29	26	21	32	16	29	14	24	17
GCGTTAATCTGTGCTT	ref_5720_new	0	0	0	0	0	0	0	0	0	0
ACCATGTCCTTGATTG	ref_5720_new	63	83	75	43	101	88	115	72	115	59
GGATATACATGAACGT	ref_5720_new	0	0	0	0	0	0	0	0	0	0
CTTTTTTGGTAATGTT	ref_5720_new	14	26	20	13	29	8	22	9	26	18
CCTACACTTTTTTGTG	ref_5720_new	0	0	0	0	0	0	0	0	0	0
CGGGTGAGCGTAATCG	ref_5720_new	8	12	9	3	18	8	11	8	16	6
CAAGGATTTTCTCACC	ref_5720_new	14	17	12	12	22	10	17	13	13	7
CCACGCAAATTGATAT	ref_5720_new	15	34	22	23	26	15	35	20	34	17
TAGCATTGGGACGGCC	ref_5720_new	19	21	19	17	12	8	23	15	22	10
CGAATGACCATAACAT	ref_5720_new	14	16	19	15	15	15	16	6	26	16
TCTGTTTGAAGTGCGA	ref_5720_new	0	0	0	0	0	0	0	0	0	0
CTATACCCGCAGATTA	ref_5720_new	16	39	23	19	29	30	37	12	38	15
TTGGGATCGAAACCGA	ref_5720_new	0	0	0	0	0	0	0	0	0	0
CTTACGTTAGGCTAAG	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
AAGCGCCGTCCCTTTG	ref_4037_RC	130	119	168	127	113	146	110	142	125	105
ATGCGGGGCATGTTAT	ref_4037_RC	43	41	83	53	43	63	33	54	49	56
ATACTTGTGCGGCTTT	ref_4037_RC	8	7	11	7	9	13	10	6	14	8
TTTGCAGTCGGTGACC	ref_4037_RC	72	62	100	80	53	92	61	78	68	81
TAAGGCGAACAAATCA	ref_4037_RC	33	14	39	30	31	28	26	25	35	28
TGGTGCGACTTACCCC	ref_4037_RC	19	20	22	25	15	7	15	14	17	12
CTTTCTAGAACAGTTG	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
TTGACAATATTAGTCC	ref_4037_RC	4	1	13	3	4	2	2	2	6	4
ATAGCCTCATCGCTAA	ref_4037_RC	23	16	22	23	19	21	24	24	15	14
ACACAATGTTGTCTTA	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
CAAGTTTGACCCGTGC	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
ATTATTACGTATCACA	ref_4037_RC	2	3	4	1	0	3	1	2	3	1
TGGTTGAGTTCCCGCT	ref_4037_RC	64	37	82	55	28	46	55	61	40	57
AGTACCGAGCCACTTT	ref_4037_RC	27	9	31	22	17	15	14	22	20	20
GTTGTTTGGAATGGGC	ref_4037_RC	8	22	29	14	14	24	13	23	11	19
ATTCTAGAACTTGGGC	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
AAAAATTGATCCTGCT	ref_4037_RC	50	50	61	63	49	60	68	67	48	39
TTGGCGGACATCTCTT	ref_4037_RC	56	61	56	65	58	50	83	58	69	57
CAAGTGCTGTCACTAT	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
GCCCACTTCAGCTTAG	ref_4037_RC	13	19	36	17	20	17	25	38	21	18
AGTGTCGGCTCCGACG	ref_4037_RC	4	0	2	2	3	2	3	2	3	0
GAGATTTTCTCACTGG	ref_4037_RC	93	53	80	71	64	63	57	103	58	75
CACCCGCATACGATGT	ref_4037_RC	55	35	42	35	41	36	37	26	40	38
CTTAAATAGCAAGATT	ref_4037_RC	38	34	60	34	41	40	30	27	43	25
TACCTGAAATAAATAT	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
CTCTTCCAAATTGGTG	ref_4037_RC	15	7	10	17	12	16	14	14	16	17
CGTTGTTGTCTTATGT	ref_4037_RC	101	49	99	69	55	53	48	71	53	57
CCGGCTAACTTGTGAT	ref_4037_RC	8	19	10	14	21	15	21	6	25	7
GTTCTTGGCCAGTATT	ref_4037_RC	26	13	32	22	24	25	12	22	27	29
GCGTTACCCCGATTGT	ref_4037_RC	12	14	10	5	6	9	5	10	5	11
CTCCGCTTGCGACGAA	ref_4037_RC	153	104	156	115	93	134	106	131	94	133
TATCTTAGTAAGTGTT	ref_4037_RC	7	9	17	10	9	13	8	9	8	6
GGAAGTATTAAACGGA	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
CGCTCGACTAGACAGG	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
GATACCGAGCCTGTCG	ref_4037_RC	314	210	335	265	206	252	158	263	212	261
ATCTTATACCCACTCG	ref_4037_RC	13	10	20	22	17	9	20	14	15	11
TATTCTCCCACCCTCT	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
GTACTGGCAATCCTTC	ref_4037_RC	74	48	78	81	59	78	64	59	45	64
CTGTGGTAACCGGTCC	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
CGCGGTGCCATCGTAA	ref_4037_RC	2	4	1	3	2	0	2	2	1	0
ATATATGTACTCCCTT	ref_4037_RC	0	2	3	5	5	1	0	4	1	0
ATTATGGTTATAAGGA	ref_4037_RC	40	39	51	50	25	38	37	38	33	37
TTCCGCGAACAACGCC	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
GTCGCTAGTGGTGACA	ref_4037_RC	13	26	25	20	24	21	25	20	20	15
CTTTTCCGTCAACCTC	ref_4037_RC	133	105	129	145	110	117	91	125	96	118
TGTTTCTTTATGTAAC	ref_4037_RC	12	18	36	21	24	19	21	23	21	29
AAGTTGGGACGTGCGT	ref_4037_RC	59	41	68	45	42	47	55	44	37	39
TCATCTCAGTGTACGT	ref_4037_RC	30	12	26	13	19	25	13	28	27	12
AACTCCTAGGTGCATC	ref_4037_RC	48	26	36	33	27	23	35	34	28	30
AGACGTCTTTGTAAAG	ref_4037_RC	14	6	14	10	6	7	10	4	18	9
GACCTTCCGCGATTAA	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
TTGCGCTAAGAGCTTG	ref_4037_RC	16	15	34	20	16	22	19	19	24	18
TCTTTCGTCAGATAGG	ref_4037_RC	32	25	37	27	19	38	30	37	31	28
CCAGTATCGCTGCTTT	ref_4037_RC	21	9	19	15	13	15	13	19	10	12
TGCCATCATGTCCGTC	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
CGATTGTTTTGTTAGA	ref_4037_RC	18	15	16	16	17	17	9	15	14	16
CACACTTAACTACCGG	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
TTCCTGAATTACACAT	ref_4037_RC	33	35	49	42	39	49	41	30	31	33
AGCCGCTACGTTATCC	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
TTCGATCGGCCTCGAT	ref_4037_RC	5	4	4	4	7	1	4	3	8	3
TTTGACCCATCCCGTT	ref_4037_RC	57	26	61	55	36	46	34	47	43	49
CCCACGTTTCATCGCA	ref_4037_RC	82	61	107	74	60	85	75	82	62	69
TACTACCTATAATAAT	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
CAGCTCTGGCGGGATC	ref_4037_RC	47	50	80	64	38	57	40	50	50	56
GTATAGCGTGTGTATC	ref_4037_RC	4	3	8	2	8	6	5	6	12	3
GCTGTTTCTAGCCCTC	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
TGTCGAATCGTGCAGC	ref_4037_RC	21	16	21	20	13	17	6	13	13	8
AATTGCCTCTTGTCGC	ref_4037_RC	48	32	55	34	29	27	34	41	27	40
TCTGCTCTGTGTGTGC	ref_4037_RC	9	15	19	14	11	14	14	12	12	9
ATTCGGCTCTGTAGGT	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
TGACGGCCGGCGGCAT	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTATCGCGCCTG	ref_4037_RC	0	0	0	0	0	0	0	0	0	0
GGGTGACATAATGGTC	ref_4037_RC	21	9	19	16	6	6	10	11	11	9
CTCACATTTTTTAGTA	ref_4037_RC	51	59	68	70	58	68	57	61	46	51
TTAGGCTCTATGCATT	ref_4037_RC	14	35	16	12	23	10	37	13	40	12
ACTCGGGCTCTGATTA	ref_4037_RC	74	47	57	63	53	67	51	60	57	64
CGCCGGTTAGATTGTT	ref_4037_RC	17	19	21	17	21	14	17	18	21	24
GTTACCTTTGCATACA	ref_4037_RC	18	17	41	16	8	17	16	24	12	9
TAACAGCGGTGACGTT	ref_2632_fdr	7	8	13	14	14	10	9	21	8	13
CGGTAACGTAGGAGCA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
CGTCATACAGCACATT	ref_2632_fdr	164	96	171	162	100	166	115	146	124	131
CTACATTTCTTCGCAT	ref_2632_fdr	50	29	56	37	32	45	26	49	33	44
CCATTTCTTTTGTTGT	ref_2632_fdr	20	13	31	30	12	30	9	15	9	11
CAATCGATCACCAATT	ref_2632_fdr	53	17	60	52	29	44	36	38	28	36
GTCATAGATGAGTGAT	ref_2632_fdr	8	12	23	15	11	15	6	18	11	10
GCCCTGAAGTCTTTTT	ref_2632_fdr	141	109	202	141	96	139	100	163	103	122
GGCATTGTCTGCCAGC	ref_2632_fdr	155	116	197	139	105	149	117	161	106	111
GGGTCGTTGTGTGCAG	ref_2632_fdr	63	28	69	56	43	58	27	66	47	55
GTCGCTAGGGACTCTA	ref_2632_fdr	91	56	98	77	39	69	58	84	51	81
ATTCTTGGGATTAGTA	ref_2632_fdr	39	32	68	42	33	56	34	45	23	43
CTCTGCAATGCCTACC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
AAATTGCTTGATAAGC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TAGCCAGTCCTAACGC	ref_2632_fdr	13	20	36	29	24	21	21	24	14	27
CACTTCACGAACGATT	ref_2632_fdr	57	33	43	56	25	45	34	47	35	36
CGAAGTTTATCAGAAC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TAGTATTTTTATGCTT	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
CAGGTTTACTATCGCA	ref_2632_fdr	32	28	31	15	12	20	37	32	24	20
TCTGACGTTATTGTCA	ref_2632_fdr	60	35	87	63	58	60	39	58	48	54
AGTGACAGCTCCAGTC	ref_2632_fdr	18	8	18	22	13	17	17	17	18	24
TGCTTCTATAACGGGG	ref_2632_fdr	534	289	679	562	311	537	346	518	394	453
CATCTTTAGTGTGTAA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GATTAGATGGTGTAGG	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TATTGGGTAGTGTCTT	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TTTAGACTGTGCCTCC	ref_2632_fdr	90	64	107	92	71	77	69	93	63	92
TGCTTCCTCTCGCAAA	ref_2632_fdr	3	1	3	2	1	1	1	2	4	2
TCCTTGGACATCTTAG	ref_2632_fdr	24	15	50	46	24	17	26	31	24	22
TGTGCCTGACTGGCGG	ref_2632_fdr	104	58	124	108	68	107	64	89	73	80
ATATTAACCGTTTATA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TGAAAGGGAGTTCCTG	ref_2632_fdr	45	20	62	53	24	37	37	58	37	46
GTTAAGACCACTAAAC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTGTACCCTAAG	ref_2632_fdr	373	226	494	393	264	401	243	394	293	335
CAAATCTCATGACATA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TACGATTAGCTAAGTT	ref_2632_fdr	3	3	2	1	2	4	4	7	2	6
TGAATGTTCGTATTTT	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTACCGCCGTTCT	ref_2632_fdr	50	53	69	87	62	60	57	60	63	54
GGGGCGTTTAGTGTTT	ref_2632_fdr	6	2	5	2	2	2	3	2	5	3
TGTCCCATTTGGTCTA	ref_2632_fdr	27	11	27	35	20	25	23	30	16	25
TTATCTGGTACGCTAC	ref_2632_fdr	11	5	8	10	5	7	5	11	12	9
CAGAATTATCACAATA	ref_2632_fdr	109	63	148	87	80	89	71	80	93	91
AGAAATTCTCAACAAG	ref_2632_fdr	50	24	39	35	28	46	24	39	22	34
CGCCTTGTGGTCAAAT	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TATCTCACGGGTCGCC	ref_2632_fdr	5	7	9	7	4	3	4	10	3	2
CGATTTACCCAGGGGT	ref_2632_fdr	98	61	108	111	64	91	69	80	78	106
GCAATGTTTCCTAGGA	ref_2632_fdr	12	9	18	23	10	11	9	14	17	13
GCAGTGGAGTACTTTC	ref_2632_fdr	18	16	19	25	17	18	16	14	13	26
GGCAAATGGTCCGACG	ref_2632_fdr	53	35	51	50	42	47	39	54	50	52
TAAGTACTTCAGGGTA	ref_2632_fdr	13	5	18	24	4	11	7	14	14	16
CATTCTGTATCGTTCG	ref_2632_fdr	12	4	9	10	3	7	4	10	7	8
GTGCAGTGTTTCGATG	ref_2632_fdr	96	90	142	138	99	118	111	117	86	90
TTTGGTCAAGGACGGT	ref_2632_fdr	21	6	24	14	7	11	11	12	12	19
TCCCGCCGATTATATT	ref_2632_fdr	87	62	136	97	61	87	67	100	80	83
TTGAGCTCGGTCCGCG	ref_2632_fdr	77	57	105	89	47	99	90	88	48	87
AAAATTCTGCGCCCGA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
AACTCTCCCGGCACCC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TCAACTTCTTGATTGC	ref_2632_fdr	79	49	107	91	44	93	52	88	53	62
TTGCCAAGGGGTAACG	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
CACCCCCGGGTCGAGC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GGCTCCTTTCTTATTA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCTCTTTACCGCT	ref_2632_fdr	15	8	19	10	13	20	10	11	23	12
AACAACTCTTTGTGCG	ref_2632_fdr	113	117	156	120	143	108	122	107	135	112
CCCCCTTACTGGGCAT	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTGTCGGTGGTCA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TATGGATTGTGTCCGC	ref_2632_fdr	6	10	7	12	14	18	5	11	15	11
ATCGGTGTCAGTATTA	ref_2632_fdr	11	8	16	11	5	5	3	6	6	7
CTGTAGATGCTCCCTG	ref_2632_fdr	70	53	81	74	54	52	52	72	48	56
GCCTACTGCGGTCCTG	ref_2632_fdr	32	20	36	35	21	18	19	29	17	29
CAATGGACCCGCATGT	ref_2632_fdr	50	38	62	48	35	35	29	41	30	44
TTTTCAGCGCGAGTTG	ref_2632_fdr	19	10	36	25	16	18	14	18	14	21
TATACGCCCGTCGGGC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
CTACAGATATCCTCAC	ref_2632_fdr	1	3	4	3	0	4	3	1	0	1
ACTCGGTGTGAAATGT	ref_2632_fdr	5	10	7	3	4	4	2	7	6	3
TTTCTATTGTAACGTA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
ACGTGACCCTTGGACC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
CAGATCCGGTTACCGA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCATCTGACACT	ref_2632_fdr	33	19	46	36	24	40	31	33	22	30
ACTGGACGCTCAGAGC	ref_2632_fdr	20	23	26	18	15	19	13	19	14	14
TTTACAGCACCGCTGC	ref_2632_fdr	11	7	16	6	3	12	6	4	6	3
CGGTGGTGTACATAAT	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GCCTATACCTGTATTA	ref_2632_fdr	29	36	58	38	39	26	38	44	26	27
AAATCAGACCAGGACT	ref_2632_fdr	70	55	92	83	61	91	61	67	66	60
TTGTCAACCTTTTCGT	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCTCATACTTTCT	ref_2632_fdr	51	33	85	73	47	74	42	61	31	56
GGTTTTCGTCCTGGAT	ref_2632_fdr	4	5	5	3	2	5	2	12	4	1
CCGGTTTGTAAGGTAT	ref_2632_fdr	9	6	14	11	15	7	12	10	9	7
GCTCGTTGGGTCAGCC	ref_2632_fdr	94	62	103	116	74	93	53	81	73	88
CCTAGCGCGGCTATAG	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
ACGGGGTCTTGTGCTG	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGAGCCCATTATA	ref_2632_fdr	14	9	18	22	23	17	7	17	9	13
CCCGTGGCCCTTCAGG	ref_2632_fdr	7	2	12	3	1	3	9	1	4	1
GTCATAGTGCGTGGTT	ref_2632_fdr	40	31	50	41	34	42	32	47	21	38
AAGATTTCTTTACGTG	ref_2632_fdr	45	24	63	47	28	40	31	43	30	34
CCTGCTTTTATTCGGC	ref_2632_fdr	5	3	7	5	1	3	3	7	1	2
TAATCAGTTACTATGG	ref_2632_fdr	35	25	28	33	16	23	16	30	25	12
TGATTGCAGTAAAACA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTACTACCGTACC	ref_2632_fdr	20	19	29	31	25	20	21	34	21	17
GTCAGCACATCCGAGA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TCTGTCACTAATAGGC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAAGCATTAGACG	ref_2632_fdr	94	82	128	153	94	111	97	108	90	104
TATAGTTGGTGCTCTA	ref_2632_fdr	21	24	22	22	15	15	23	12	29	20
GACGATGTACGAATGG	ref_2632_fdr	45	41	71	66	29	69	37	64	42	49
CAATTGACTTTTTTCC	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
GATTCGTCATCCGGGT	ref_2632_fdr	70	43	59	49	22	41	28	51	26	46
GGGATTACATAGGGAA	ref_2632_fdr	25	20	26	34	27	28	21	38	13	36
AAAGGAGTCTATCTTA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGGCTGAGATCCG	ref_2632_fdr	35	22	37	36	22	34	25	25	27	35
TAGTGGCGTAACTTAA	ref_2632_fdr	7	5	7	4	5	7	1	4	6	5
GATGATTTCTTTGTTT	ref_2632_fdr	50	30	70	43	39	56	22	69	47	38
AATTAGCTCATTTTTT	ref_2632_fdr	19	11	32	27	13	24	15	21	8	21
TAAGGACGGTATCGGG	ref_2632_fdr	31	17	43	35	17	30	21	23	17	33
CCGTTCCCGGGTCCGA	ref_2632_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTCTAGCTAAAG	ref_4003_upstream	8	41	15	7	26	11	35	11	19	19
CATATCTCTGTCATGA	ref_4003_upstream	28	35	30	23	42	29	54	17	39	17
ACTTTTTTGAAGACAC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
TTTAACTAATCGTAAA	ref_4003_upstream	7	24	19	19	18	16	17	10	16	8
CCGAGAGCTTTTTTGG	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
TAACAGGTTCCAAGAT	ref_4003_upstream	46	77	71	51	80	44	80	50	90	61
GGAGTGAGCTTTACAT	ref_4003_upstream	11	21	18	10	14	12	23	19	19	13
CTATTCACTGCGCTTC	ref_4003_upstream	14	20	16	21	27	20	30	21	23	24
ACCCTCGAAGGAGCCT	ref_4003_upstream	20	47	22	20	31	22	36	20	33	19
TGTTCGTGTTTCATTC	ref_4003_upstream	19	36	30	18	26	19	43	18	38	18
ACCGATTCACACGCTC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
GCCAAGTTGGTAGCCA	ref_4003_upstream	41	63	24	27	67	39	73	39	57	28
CGCTCAGGTCCTTTCG	ref_4003_upstream	23	45	27	19	31	20	34	24	34	26
GGGTTTCATTTCGTTT	ref_4003_upstream	58	53	72	50	65	44	48	52	60	46
GCATAAATCGGCAATC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
TGTCTTCGATGACTAC	ref_4003_upstream	20	28	10	11	35	7	21	12	19	7
TTTTTAGGTCTCTGTT	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
TATGTGATTGGCCTCC	ref_4003_upstream	31	60	42	35	90	42	84	43	80	38
ATATTTATGGCCCCGT	ref_4003_upstream	23	25	17	13	25	18	19	11	13	17
GCTTAGCTGGCGGATC	ref_4003_upstream	2	2	4	3	2	2	2	0	5	0
GATTCATTATCCTGCC	ref_4003_upstream	6	17	7	6	19	14	15	5	11	7
CAGTGAAGCGCTAAGT	ref_4003_upstream	26	25	12	18	36	14	42	12	27	14
TGCACATTTGCAATCG	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
GCAAAAAGGTCCCCCA	ref_4003_upstream	91	91	79	82	88	83	100	50	109	72
CAGCCCTTGATACATA	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
CTGTCAATTAAAGGTC	ref_4003_upstream	17	46	21	14	38	21	57	14	30	19
AAAGTCATTACTCCGA	ref_4003_upstream	32	63	33	42	58	31	58	46	62	33
ATTGCTCGATCAGAGC	ref_4003_upstream	46	77	68	55	67	47	54	35	80	42
TCATATATGGCCTTGA	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCAAAAGATCTTC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
GGAATTCGTTCCCGCC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
CCGGGTTACGGACTCT	ref_4003_upstream	47	84	68	48	80	58	87	41	82	52
CTTTGGAAGCCCCGTC	ref_4003_upstream	10	24	23	13	35	22	26	12	33	16
CATTGACGTGCGGTCC	ref_4003_upstream	14	21	16	15	14	6	27	14	23	9
ATACCAAAATTAGTTG	ref_4003_upstream	10	15	10	10	13	6	17	8	20	13
TTCCCGATGCAAATTA	ref_4003_upstream	122	154	137	94	161	109	167	109	154	94
CTATACTCGTACGATT	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTGTTATCCGTA	ref_4003_upstream	15	13	19	10	19	12	17	10	16	8
TCGACGCTCTATATTC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAACTCTGCTGCA	ref_4003_upstream	8	16	8	7	15	9	16	4	15	6
TACCCCGTGCCGTTAT	ref_4003_upstream	11	6	16	7	8	10	14	7	15	4
CAGTGGATTATCTCAT	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTCCCTCTTACGT	ref_4003_upstream	22	36	27	19	36	18	49	22	37	16
GTAGTGGTTAAGATTC	ref_4003_upstream	26	44	37	21	54	36	51	20	53	15
TAAGTACGCCGGGCTC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
GTGGCCTTTCACATGG	ref_4003_upstream	5	9	5	7	9	5	8	3	6	3
GCTGTATGCTACTCCC	ref_4003_upstream	2	2	1	0	2	3	2	0	6	2
TGAAGGTTCGTGAGCC	ref_4003_upstream	82	164	104	93	163	81	164	80	150	92
CGATGAAGGGAGCCCC	ref_4003_upstream	14	18	11	13	18	7	22	8	18	6
AATCATTCTATACACT	ref_4003_upstream	8	13	17	6	16	12	16	3	17	6
CCCTGATCTTCTCCCT	ref_4003_upstream	15	19	28	9	30	10	28	16	21	10
GCTCTTTTATTGATGT	ref_4003_upstream	21	39	30	28	44	21	33	26	31	11
ACGTTTGACGACAGTC	ref_4003_upstream	98	137	87	78	146	72	155	60	176	67
ACCCCACTACAGTGTA	ref_4003_upstream	8	16	20	9	27	13	21	7	20	15
CGGATCAGGCAGACCC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
CTCTGGAAGGCATCAG	ref_4003_upstream	9	15	15	8	27	8	16	11	12	6
TCTCTTTGCCCGAGTC	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
ACGTTGGGTGTTGGAC	ref_4003_upstream	24	53	25	14	58	21	54	17	41	20
CGAGATGATCCCTATA	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
AATGTTGTTCACGTTA	ref_4003_upstream	1	4	0	0	3	1	5	1	4	3
TGCTTCGCTCGTTCGT	ref_4003_upstream	20	38	24	13	42	19	43	23	44	14
GTGAACCTGTCCTCGG	ref_4003_upstream	10	17	7	17	14	10	25	11	16	11
CGACGATCCTAAAGCT	ref_4003_upstream	29	52	44	43	36	35	40	29	47	27
TCGTGTTCTCGCTGTT	ref_4003_upstream	13	21	18	10	15	8	15	18	19	13
TTTTTGGCGTTTTCCT	ref_4003_upstream	54	95	58	50	86	47	75	46	66	44
GTTCGTACATCAGAAC	ref_4003_upstream	47	77	55	36	80	46	76	44	86	34
TTTTTTTATTGATTTG	ref_4003_upstream	22	29	27	20	34	16	21	21	34	16
GTAACACAAGGTAACT	ref_4003_upstream	0	0	0	0	1	0	2	0	2	1
TACGTTGCTTATATGG	ref_4003_upstream	0	0	0	0	0	0	0	0	0	0
GATAATTCGAGATACT	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
CTGTTATTCTCTCTTG	ref_4848_missing	20	34	26	26	26	12	36	26	21	22
AACATTCAGAGCGTGT	ref_4848_missing	27	44	40	35	37	31	54	24	60	23
ACCTTATTGTGGCTTG	ref_4848_missing	57	95	88	89	96	77	99	63	119	62
GCCCTAAGTAATTCCA	ref_4848_missing	42	54	34	45	59	32	71	40	56	32
TTATGGGAAGCGCTGT	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
GTGGCCTGGTATACTT	alt_4848_missing	121	154	151	94	173	95	148	98	169	89
TTTCCCTTGCCTTTCA	ref_4848_missing	13	26	7	4	12	9	7	7	19	4
CAACAATGTGCCCAAT	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
TATTGCGTTTACTCTG	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
GTTCCGCTCTACCCCT	ref_4848_missing	32	70	66	46	75	52	65	46	77	36
TTCTTCGACTATTATA	ref_4848_missing	42	71	51	47	63	36	76	39	93	39
CACTCTATCGGGAGTT	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
TACCGCAACCTTACTC	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
AATACGGAAATCATGC	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
AATAACGAACGTCTCT	ref_4848_missing	15	30	30	24	19	15	29	14	21	25
TAGACACCACCTTGTA	ref_4848_missing	3	7	2	6	5	4	1	2	3	3
CGCTCGCCCCGATTGA	ref_4848_missing	159	245	155	132	213	132	238	148	256	125
TCTTTACGTGCACGCA	ref_4848_missing	62	79	91	62	98	61	88	52	102	53
CTTTCCTGATCGGTGT	ref_4848_missing	33	53	30	31	35	27	43	27	36	33
GGTCGGGCGGGATCTC	ref_4848_missing	59	93	79	71	94	71	82	65	76	78
TAGAACTCGAGAATTT	ref_4848_missing	13	12	10	1	9	9	7	3	18	7
GGTTTACTTTCTCGAG	ref_4848_missing	5	14	7	5	8	10	5	0	15	3
TTTTGGAAACGGCAAA	ref_4848_missing	178	223	197	186	204	179	220	145	236	147
CTATCTACGACGCTAC	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
ATCTGTATTGCTTATG	ref_4848_missing	3	5	0	0	3	1	5	1	5	1
CACTTGTAGTTAAGGC	ref_4848_missing	18	24	24	16	33	10	32	8	31	6
AAAACTCATCTGATCA	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
CCTTCAACGGTGGACA	alt_4848_missing	21	44	14	9	42	20	43	15	43	11
GGTTGTCCCAAATAAG	ref_4848_missing	18	26	28	23	27	19	18	15	28	20
TCCGAAGGCTTACTTA	ref_4848_missing	1	6	3	4	5	4	8	4	5	2
CGCACTTTTCTTAGGT	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
CTACCCCCTCATGTGG	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
TATCTGGCAATATCTT	ref_4848_missing	37	59	50	46	74	42	56	38	61	44
CTTACTCGCCTAATAG	ref_4848_missing	2	1	0	0	2	0	0	0	0	1
GCGAGCTTTATGCTTC	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
TGGCTAACCAATGTCA	ref_4848_missing	2	9	11	7	17	8	9	3	6	4
TCCAGCTTTTCAGAAT	ref_4848_missing	0	0	0	3	1	0	1	1	1	3
AACGGAGCGACTTACT	ref_4848_missing	10	32	21	14	19	14	35	15	36	18
TCGCTAGTCATACTTA	ref_4848_missing	43	50	42	34	56	32	74	30	78	36
ACGGGGCCATGGACAC	ref_4848_missing	9	14	6	9	13	3	12	9	11	12
AACATTAATGGCTATG	ref_4848_missing	27	17	23	15	25	16	33	12	33	20
ACACCCTTGGGCCCAG	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
TCTCTCCTGGTTAATT	ref_4848_missing	3	8	7	3	15	3	4	3	11	5
TTTCAGTATCATTCGC	ref_4848_missing	0	1	1	2	1	0	2	0	2	7
TTTCGCCTTCCCCAGA	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
AATGCGGGAGATAGAT	ref_4848_missing	0	0	0	0	0	0	0	0	0	0
GGTTTCGGTTCTCGTC	ref_4848_missing	92	124	103	115	128	82	113	95	125	80
CTTCGGGTGTAGGTCG	ref_4848_missing	2	9	3	0	4	5	9	0	6	1
GGACAGCCACTTTGGA	ref_4848_missing	3	17	12	10	12	4	20	6	21	8
CTTCTCAATACAGTGA	ref_4848_missing	12	38	22	5	21	13	25	10	34	13
GGAATGTGCCTCCGAC	ref_4848_missing	72	123	118	96	127	89	137	95	150	90
TGTTGTGGCGGCAGCC	alt_3567_missing	66	94	104	72	85	76	92	60	123	54
GGCATTTTGTCCCCGG	alt_3567_missing	31	55	44	31	73	33	64	35	50	35
CTCTTGTCCGCTTGTG	alt_3567_missing	78	164	74	70	188	68	170	81	174	62
GTGCCTACGTACCCTC	alt_3567_missing	12	19	6	9	18	6	27	5	10	3
TCTAGCAGGCCTTAGC	alt_3567_missing	0	0	2	0	1	0	0	0	0	1
TCATACATGCATATGG	alt_2955_missing	17	14	18	11	21	21	16	14	16	22
GCGATTAAGTATTCTG	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TGGGTAGGCATTTCTA	alt_2955_missing	1	3	4	1	8	3	6	5	3	1
GTAGATCTTTTCTATT	alt_2955_missing	13	13	14	24	14	19	16	18	19	20
AATAGTGAGGTTTTTG	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CAGTCAGAGCGATTTG	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TTGACTCCTGTCTGCT	alt_2955_missing	51	62	77	70	49	77	57	58	56	54
TTTCTTCAGGTCTCGA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CACTGTTCGATTGAAT	alt_2955_missing	2	1	4	2	5	3	3	1	1	1
AGCGGGCGAGTTGCCC	alt_2955_missing	15	9	11	10	11	11	22	11	14	10
CTTGTTATGTACGTCA	alt_2955_missing	27	30	34	25	38	29	39	30	34	38
GTCGCGTAACCTAGAG	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
AAGCGGCCAGCCTTCA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
ACTTCGTCCCCCGTTC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GAGGGGTTTAGCTATG	alt_2955_missing	3	1	1	4	3	7	2	2	7	2
TACGTAAAGCCATAGT	alt_2955_missing	6	9	10	8	6	8	13	10	20	10
TAGCTCATAACACGCA	alt_2955_missing	16	13	8	17	15	10	17	13	13	13
GATGGCATCCGTGGCT	alt_2955_missing	10	18	9	10	9	14	12	7	9	9
TTGGACCGCGCTCGCG	alt_2955_missing	4	4	2	9	2	3	9	6	8	10
GAGATAGTTCTGGAGC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CGTCCTCCACTTATCA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
ATCCCGCGTGGATTTA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TTTGTGTGTATATCGC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CAATCCCGTACCACTT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GGCCATATTTACCCTC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TTGCATGCACTCGGGG	alt_2955_missing	1	1	4	2	0	3	4	1	0	2
TTAGACCGTATGAAGC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TCGCTGTTGCCGGAGA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TCGGTAGTGGTGCGAT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GAGACTGTAGTCAAAG	alt_2955_missing	38	32	41	31	42	49	48	30	42	31
GGCGGGCAAGTTATTT	alt_2955_missing	20	19	39	19	12	26	18	24	22	20
TTTCTCCCTAACAAGG	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TTTGCCTTAATATCTC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CTTAAGATGGTTACTC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
AAAAATCGTCCGTCGC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GTATATGACACTGGAA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GGGCTGCTGGTGGCTT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CTCCAGCCACAATTAA	alt_2955_missing	5	4	3	3	8	2	4	3	4	3
ACTCCGACCTATGTCA	alt_2955_missing	2	3	1	4	2	3	6	2	2	0
TCCGGGGGCTGGTATA	alt_2955_missing	0	0	1	0	1	0	0	1	0	1
CGTGTTCGCAATTTGT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TACAATTGCCTCTAGA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
ATTCTATCAGCTTTTG	alt_2955_missing	19	9	17	16	10	6	16	4	11	8
GAATGACCGTATATGT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CGTATTTCGTGAAAGT	alt_2955_missing	9	14	20	20	13	16	18	14	24	12
ACTCGTGGTTTTGTGA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CATCCGGCGCGAGATC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GAGCTCTTCACTTTAC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
AATGAGCTGCACCGGT	ref_2955_missing	15	19	36	45	25	31	22	17	27	29
TCAATGCTCCGCCCGG	alt_2955_missing	3	0	1	1	1	0	0	0	0	2
TCCCCTTCCGCGACAA	alt_2955_missing	35	42	34	38	29	33	39	22	29	20
GGTATGGAGGAACGTT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CTGCTCCTGGTGTGTT	alt_2955_missing	6	7	11	10	13	5	11	7	16	7
AGTGGGAGGATTTGTG	alt_2955_missing	41	51	45	41	44	57	56	45	55	38
GTATTTTTTTAATACG	alt_2955_missing	3	7	3	6	9	2	5	6	10	6
AGTTTGCCTACCAACG	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
CTTCAGACAGTCTATT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTAGAAACTATC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GTCATCCTAGGGCGTA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TTGGTTTGTTCGCCCG	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TATTACCCCGTTCACG	alt_2955_missing	7	7	21	0	12	6	10	10	8	6
TCACTTGACTTATGGC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TATGTTCTATCGTACA	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GGTCATGGGGGGAGGG	alt_2955_missing	14	12	26	11	6	11	13	14	22	17
GTAGCCTTGAATCGTT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
ATACAGAAAAATCATC	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
TTATGAACGGTCTTAT	alt_2955_missing	0	0	0	0	0	0	0	0	0	0
GGCATGTAGGTCGTCC	alt_5907_new	31	32	34	36	44	35	45	29	28	25
ATGACGGATGGCAGTT	alt_5907_new	25	24	27	18	22	19	18	20	28	16
CTTCCAGCGGGAATCG	alt_5907_new	10	10	14	7	14	7	17	2	7	8
TACTTTAGGACACGGT	alt_5907_new	0	0	0	0	0	0	0	0	0	0
GAACCCTCCATGTAGT	alt_5907_new	51	64	57	47	65	58	63	64	65	52
GGTTATCATTACGCGG	alt_5907_new	4	1	8	3	0	1	1	3	1	1
ATAGTCTGGAGCAACG	alt_5907_new	0	0	0	0	0	0	0	0	0	0
ATGTTTCCGCTATGGC	alt_5907_new	2	7	8	0	7	3	7	4	5	2
GGGTAGATCATCGGTG	alt_5907_new	2	3	0	3	3	3	4	3	2	4
TTAATATCCTTCCCCC	alt_5907_new	8	10	6	12	7	7	3	7	4	5
AGAACATGTATCTCGG	alt_5907_new	10	7	6	6	6	1	6	5	4	6
ATTTGATTTTGACTTC	alt_5907_new	194	206	222	194	222	182	241	182	254	178
TTGGCATGCGGTAATG	alt_5907_new	71	61	82	72	83	51	78	75	74	57
TTTCCGGGAAGTAAAG	alt_5907_new	0	3	1	1	6	1	4	5	0	2
CTGGGCGGGGAGTTCT	alt_5907_new	13	8	15	11	12	9	12	7	16	9
AACTCGTTTGGACGTA	alt_5907_new	18	20	15	24	21	12	21	18	22	15
GTGAATACACTTGTCT	alt_5907_new	56	59	68	56	66	61	64	65	56	63
AGACGCTCCTGCGAGA	alt_5907_new	49	71	82	64	74	52	84	58	57	59
GTTGGGTTTATCCGAC	alt_5907_new	5	10	6	1	1	5	2	8	6	1
TCGGGTGGTTTCTATG	alt_5907_new	128	91	174	143	94	155	109	127	101	132
CCGTTTCTCTTAGAGG	alt_5907_new	48	42	34	27	42	35	32	33	53	29
ACAAGTGCCACCCCTC	alt_5907_new	10	15	7	12	9	10	11	5	13	2
TGTTGTAGCAAATTTT	alt_5907_new	75	86	87	86	74	75	106	79	74	68
CTAACACGGTTCGACT	alt_5907_new	2	1	0	2	0	0	0	1	0	0
GCCTGCCCGCCCAGCC	alt_5907_new	0	0	0	0	0	0	0	0	0	0
AGCACTGAATCATTGC	alt_5907_new	31	51	39	39	51	49	49	50	46	45
TCCCTCTTAAGTTTTG	alt_5907_new	0	0	0	0	0	0	0	0	0	0
GCGCGTGTCTTGGGTC	alt_5907_new	4	4	1	1	3	2	2	3	1	1
GACTTCTTCGGGCTTT	alt_5907_new	12	12	11	6	15	16	10	13	12	9
TACGGCGAAAGCTGGT	alt_5907_new	14	10	17	22	22	20	14	18	24	17
GCCTCAGTTAGTCAAT	alt_5907_new	21	23	13	18	16	13	32	19	20	19
TAATTCGTCCCTAAAG	alt_5907_new	1	1	3	0	2	3	1	1	3	0
ACATGTAAATGCACTT	alt_5907_new	7	5	9	7	11	8	9	2	5	9
TGGGAGCCAAGTAAAA	alt_5907_new	0	0	0	0	0	0	0	0	0	0
ATCCGTTTAATATGAT	alt_5907_new	24	27	29	26	29	27	28	16	34	31
GAGGAAGGCTTCTTTA	alt_5907_new	0	0	0	0	0	0	0	0	0	0
GTTCTCGTGAAGCCAT	alt_5907_new	64	65	45	51	51	51	67	46	50	40
CCCTTGGTGCTGGATA	alt_5907_new	12	15	13	13	21	8	20	6	11	10
GACAGCCTGGGGAAGG	alt_5907_new	8	21	15	11	12	15	17	13	13	18
TGCCTTACCGTCAGGC	alt_5907_new	42	51	62	54	63	34	71	49	64	42
AAGTCATCATCTAGGG	alt_5907_new	0	0	0	0	0	0	0	0	0	0
GCGTAAATGGCTCTAC	alt_5907_new	33	24	35	34	30	25	30	13	31	28
CCGTTCAGACCCAGAG	alt_5907_new	151	181	183	143	183	124	223	143	208	128
TTGTCCACTAGAAAAT	alt_5907_new	0	0	0	0	0	0	0	0	0	0
ACGGTAAACTACGCCT	alt_5907_new	9	43	12	14	46	18	35	5	32	10
TTATCATAGGTTCTGA	alt_5907_new	39	57	61	51	56	55	64	44	77	59
TTTTCTTGTCTTTCTA	alt_5907_new	61	34	75	57	43	54	47	62	54	60
TAGGCTTCGGCCGAAG	alt_5907_new	11	5	8	4	4	5	3	2	2	6
CTCAGTTCGTCTGCCC	alt_5907_new	3	13	2	4	13	4	6	2	23	4
CCGTTCAGCCCCAGAG	alt_5907_new	0	0	0	0	0	0	0	0	0	0
GTGAACATCTGGTGGT	alt_5907_new	20	23	19	31	24	15	27	18	21	15
ATTCCGTGTCACACAT	alt_5907_new	34	39	44	60	47	40	45	27	48	38
GGCTAGAGTTTACTAT	alt_5907_new	32	65	48	52	63	50	66	41	65	39
ACCAGTGCTCTGTCCG	alt_5907_new	35	36	28	44	47	26	30	30	38	29
AGCGAGTATATTCTCT	alt_5907_new	85	94	99	100	116	62	111	81	100	58
ATCAACCCTTCCCTCT	alt_5907_new	4	8	7	5	10	5	3	4	5	2
CGGAGGACGCAACCTT	alt_5907_new	19	29	34	23	15	32	21	18	26	16
TTCCGCACTATTTTTA	alt_5907_new	0	0	0	0	0	0	0	0	0	0
AATCTATTTGACCTTT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTCTGTCCTTTTC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTAGTACTGCTT	alt_3516_reverse	16	18	32	26	19	25	20	23	22	22
TTACATCTGCACTTCG	alt_3516_reverse	70	43	89	89	20	63	27	65	38	72
CCCTATCCTTTTAGGA	alt_3516_reverse	49	32	80	59	22	52	30	63	30	60
GGATAACACGGTTGTT	alt_3516_reverse	98	30	108	107	40	90	39	75	35	82
TTCTGACCACGCCGCC	alt_3516_reverse	54	33	71	75	17	56	25	47	28	47
TGTCTTACATGCGATC	alt_3516_reverse	18	14	28	17	13	24	11	37	24	16
CGTTTATTGAATACGA	alt_3516_reverse	73	32	63	85	38	81	39	84	33	69
TGGGTCAATGTATTTA	alt_3516_reverse	77	40	108	89	42	79	40	102	42	77
ATGAGTATTCGCCTAG	alt_3516_reverse	19	13	36	17	18	21	12	28	24	28
AGGGACGTCGTAAATG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
GAATAGAAGCTGTCTT	alt_3516_reverse	32	18	36	29	17	18	17	19	13	25
TGAAGACCTATGGGCT	alt_3516_reverse	5	7	10	16	9	7	4	10	7	8
TAGGCGCGTTTTTACG	alt_3516_reverse	28	14	25	20	18	29	22	27	11	28
GGCCCGGATGTTCATC	alt_3516_reverse	128	55	155	122	70	113	79	127	58	120
AGTGCATCTTGTACTC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
GATCCAATAGCCCGCT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CCTAATGTGTCGTCTA	alt_3516_reverse	48	15	55	54	38	37	13	37	21	25
ATACCATGTACCCAGG	alt_3516_reverse	49	22	71	60	16	41	31	48	23	53
AGTGCGCATCACGGTG	alt_3516_reverse	61	25	76	64	19	61	27	56	25	47
ACGCCGATGTCGGGTG	alt_3516_reverse	0	0	3	0	1	1	0	0	0	1
ACAGTTTCATCTGCTT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
AAATATGACCGGATCG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CAAGTCCCGTCTCTCT	alt_3516_reverse	185	57	232	219	87	199	109	184	98	206
TTCGAGGTTTTGTGTG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
GGTGATGCTATATCTT	alt_3516_reverse	57	28	76	77	16	59	39	48	41	61
CACGACCATCTTTCTC	alt_3516_reverse	61	25	76	83	33	50	50	59	28	54
CGCGATGCATGATAGC	alt_3516_reverse	30	8	33	30	12	33	18	28	12	31
CATTATGGTGCGTCAG	alt_3516_reverse	273	101	284	244	100	244	108	218	105	216
TTACGCTGACTTAATA	alt_3516_reverse	140	66	164	125	65	119	75	127	62	110
CCCGCTTGGCTACTAT	alt_3516_reverse	46	30	79	73	30	65	30	66	36	44
GGTAAACGTTTTTGTA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CATTCGTATGGGTCCG	alt_3516_reverse	274	139	331	300	145	240	117	235	153	247
CAATTGGATAATTTCG	alt_3516_reverse	305	115	320	298	125	275	131	285	146	240
GGTATCCTCGGACTGT	alt_3516_reverse	183	95	215	185	88	189	80	184	88	156
CATAGTCTCTCTGTTC	alt_3516_reverse	4	3	11	7	2	7	1	5	2	3
TGATGATTTCGCGTAT	alt_3516_reverse	31	10	29	23	9	20	11	27	8	23
ACTCCTCTAGAGTGTT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGGGGCTTGGTTT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTGATGCTAACC	alt_3516_reverse	10	1	12	10	2	7	1	6	3	3
GTGTTTAAATAGACGC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCCTAACAGGTA	alt_3516_reverse	88	43	148	123	52	105	64	101	58	92
CTTTCTAGTTTGGCAT	alt_3516_reverse	88	74	110	101	68	85	54	103	60	84
GAGCACTGTTTCTCGC	alt_3516_reverse	14	9	9	8	4	10	6	18	7	22
TTCTTACAACAATTTC	alt_3516_reverse	80	20	82	65	24	50	24	80	39	60
TTATGGAAGAGTGAGA	alt_3516_reverse	154	77	198	166	90	170	71	125	90	129
GTAGTTCTAAGTTATC	alt_3516_reverse	36	17	36	40	24	33	20	25	16	17
ATTGTAGGCACCCGCT	alt_3516_reverse	99	26	129	95	47	80	39	83	48	82
AATGCGCAATGCTGAC	alt_3516_reverse	14	10	19	13	12	19	9	13	8	18
AGGATGGGTCTGGTAC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
AGCACGCAGCGGACCA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGATGAATTCACA	alt_3516_reverse	182	73	239	213	96	174	76	166	78	193
AGGTCTCCGTTTCGTA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
AACAGACAGCCCCAAA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGATGCCCGTCTA	alt_3516_reverse	95	41	108	96	49	89	34	96	46	80
GAGGCATATTGACTGT	alt_3516_reverse	412	190	547	454	209	416	211	359	242	384
TACGGGTGACCCTTTC	alt_3516_reverse	52	26	79	51	18	61	23	44	11	44
TTATACGGCTTAAACG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGTGCATCTAACG	alt_3516_reverse	56	27	84	61	27	49	23	54	24	54
GCCTCAGGTGTGCATT	alt_3516_reverse	67	36	96	84	36	62	42	74	40	70
TTTGCCCTGCCTTCAC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
GGCGGGTAGAGGTCAG	alt_3516_reverse	37	13	38	34	14	23	16	34	20	24
CTGGGTCCATCTTGGA	alt_3516_reverse	8	5	7	17	2	8	5	4	2	5
CCCTTGTCATACGAAA	alt_3516_reverse	35	23	55	62	24	45	30	32	32	40
ATCGCCCCGGGTTCTT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
GCGACCATACTAAGTT	alt_3516_reverse	136	48	135	128	67	128	64	124	64	101
TCCGGAAATCATGCTA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TTACGGTCGGGGCCGA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TATTAGCTTACTGTCT	alt_3516_reverse	132	53	172	117	59	134	58	104	63	121
GGGCTCAGTCCAGCGT	alt_3516_reverse	32	16	43	30	29	38	18	37	18	37
ATGGTTGCCGAATCTA	alt_3516_reverse	133	63	185	154	60	140	81	131	77	143
GTATAGAATTATATCA	alt_3516_reverse	89	48	118	89	44	79	43	78	51	92
GGTTGTATTCTTCGTG	alt_3516_reverse	107	55	149	101	58	105	54	127	53	80
TTTAACTCCTAATTTT	alt_3516_reverse	114	48	131	111	51	97	41	115	44	99
TGGGTTATCGATTTTT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CCGGTTTGGCTGACCG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TTCCATCTTCGTCAGG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TACCCTTTGTTATATT	alt_3516_reverse	5	2	11	5	2	2	7	5	6	8
GACTGACCACAATGGT	alt_3516_reverse	67	27	90	67	26	56	37	56	26	60
CGGGAATGCTCTCTGG	alt_3516_reverse	52	23	50	33	18	47	21	39	17	48
GGATCCCTCCAGTAAC	alt_3516_reverse	351	147	383	353	158	359	178	294	165	312
TAGGACACATCTGACG	alt_3516_reverse	55	32	74	59	22	81	30	59	34	60
AACGCTACTAATCCGC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
CATTCGATTTCTCTGT	alt_3516_reverse	257	51	264	227	65	187	61	169	54	192
CTCCATCATACTGTTG	alt_3516_reverse	11	13	27	8	12	5	10	13	14	9
CTGAATCGCAATATGC	alt_3516_reverse	178	81	180	173	56	172	76	151	68	117
ACAAAGAATGTATGGC	alt_3516_reverse	97	38	101	98	41	95	32	91	45	74
GTCTACACAAACACCG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTCATCAATGTCC	alt_3516_reverse	18	5	23	10	8	12	8	16	6	14
CTTTGCATACCCCCTA	alt_3516_reverse	33	25	65	57	27	40	22	40	30	55
ACTTTCTGGAGTAACG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TAGACCACCAGACGTA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TCAGAACAGTCTTATT	alt_3516_reverse	122	64	153	107	73	100	52	99	61	111
TCGACCGATATCGCTT	alt_3516_reverse	114	64	163	128	68	99	90	104	60	102
GCGTTCTGTGGCTCCA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
AGACTGTATATCGCCA	alt_3516_reverse	81	37	90	121	47	84	52	91	49	88
GGTCCTACCCTATATA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGCCATATTATAG	alt_3516_reverse	26	16	35	27	12	28	16	25	10	23
CAGCTCCGGCGTAGCA	alt_3516_reverse	28	27	30	22	54	26	32	20	37	33
AAGCTTTTTTGCAGGC	alt_3516_reverse	99	44	138	100	50	94	40	86	56	76
AGTTTTATGCCTATCA	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTTTTTACCTCCA	alt_3516_reverse	132	45	142	144	57	130	62	127	57	124
CTGGTTTCGATTTTCT	alt_3516_reverse	163	60	212	189	82	180	73	163	90	157
GGGAGTCCTGTTGACG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
AGCCACGAACTGGTTG	alt_3516_reverse	19	12	15	12	11	13	15	13	12	16
TTTCATATGCCTTTCA	alt_3516_reverse	44	16	55	48	19	47	18	41	22	48
CGAGGGGCAGTTTACT	alt_3516_reverse	10	1	11	10	4	5	8	8	5	5
CCACTGGAGAAGCTAA	alt_3516_reverse	37	27	53	29	17	42	8	42	19	30
CCCCTGCGGTTTTCAA	alt_3516_reverse	87	285	108	123	247	109	284	102	269	96
CCGGTGCCGTTGAATG	alt_3516_reverse	6	10	2	2	13	3	13	2	8	1
CATAAAATTTCACACA	alt_3516_reverse	232	101	248	251	102	183	101	216	135	226
TATCTTCAGGAACCCG	alt_3516_reverse	47	12	66	47	22	47	30	42	26	42
GCTTGCCCACCGTTGC	alt_3516_reverse	27	22	36	40	26	32	19	31	26	22
AGTGCCTTCGATCCAT	alt_3516_reverse	63	45	83	65	25	72	34	72	34	51
AGCTTCCTCACGGTTG	alt_3516_reverse	30	8	33	23	9	29	9	22	11	15
TTAGAGCGTTCACCGT	alt_3516_reverse	139	61	157	125	57	118	45	89	85	119
GCGGTGCCGTTCTTAC	alt_3516_reverse	33	14	20	34	10	24	11	39	15	25
TCATGTCTGCCCTTAG	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TAGACGTACAGCTACC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
ACACCCGTCGCGTCAT	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TGAGTTAGTCCGGGTC	alt_3516_reverse	37	12	32	31	16	43	14	29	16	36
CATATTAGTTCTGCCT	alt_3516_reverse	45	20	51	55	19	36	24	57	22	48
ATTGCAGATTCGGTAG	alt_3516_reverse	66	31	97	69	35	72	42	64	41	49
CGGGTTTTTCTCCTTC	alt_3516_reverse	0	0	0	0	0	0	0	0	0	0
TTAGAGTTACGGCTGG	alt_3516_reverse	123	68	138	125	72	125	70	124	75	151
AACTGTTTTCTAAAAG	alt_3516_reverse	114	63	171	135	64	123	59	128	69	119
TCCAGGTGGCTCCATC	ref_5181_RC	4	6	2	1	10	1	6	3	11	2
TCATGATGTTGTTGTT	ref_5181_RC	28	22	31	21	16	18	14	26	10	18
TGGCTTATATTATCAA	ref_5181_RC	12	4	25	12	5	12	8	10	9	9
GAAGGCGTCCATAGTT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
GTAAGATTTCAATCCT	ref_5181_RC	22	17	36	28	14	13	21	21	17	18
TACACTATTAATAGGC	ref_5181_RC	85	48	61	63	35	55	38	56	39	43
AAGCCTTTTTTCGACT	ref_5181_RC	95	75	173	111	68	118	77	120	62	126
GTTTATCCCCGTTTCA	ref_5181_RC	9	13	6	7	12	7	12	12	22	4
ATTGACGGCAGCCCTG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
GAAATCTTTGAAGAGC	ref_5181_RC	274	152	294	224	162	263	184	220	141	230
ATGAATTCTACGCTAA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
GTTTTCATCATGGTCG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
GCATGTGTTAAGATGA	ref_5181_RC	246	156	286	208	140	214	176	221	134	197
ACTTAGTGGGGCCTAG	ref_5181_RC	25	15	12	20	14	22	14	14	16	25
GTGCTCCGGCATAGGG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AATCTCTAGCTTCTTA	ref_5181_RC	31	79	45	34	79	38	74	26	72	37
GCGGATGCAACAAACT	ref_5181_RC	16	13	21	23	16	18	19	20	18	18
GGAAAACGGTCACGCA	ref_5181_RC	31	14	15	18	9	15	14	13	12	17
AATTGCATGATGGTTC	ref_5181_RC	84	49	95	68	53	82	56	78	58	75
AATCTAATCGCCTGCG	ref_5181_RC	130	117	151	160	102	142	112	130	121	118
GCTGAGTTTGTGAGGC	ref_5181_RC	170	79	185	134	77	148	87	147	94	128
AGCTATAGACGTTTGC	ref_5181_RC	45	37	50	42	30	52	27	53	33	47
ACGGCAATTTAACTTT	ref_5181_RC	65	43	106	88	52	73	50	81	56	57
CACCCGAGCGGGCTTA	ref_5181_RC	41	15	39	29	30	35	34	37	20	29
ATTTTGCTTCGCACGT	ref_5181_RC	116	79	147	112	85	108	77	100	88	94
TGTTCTCACTGCTGGG	ref_5181_RC	12	10	20	20	9	7	5	6	16	10
ATCATAAAACCGACTA	ref_5181_RC	100	62	100	56	74	77	58	67	67	81
GCTTAATGCGTTGAGT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TTCCGTAGTAGGACAC	ref_5181_RC	233	118	244	188	130	149	131	173	150	187
TAAAACAATAGAGGAT	ref_5181_RC	28	15	30	22	22	19	29	24	11	22
AGAATGACACTATAGC	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AATTCATTCAGTTCTT	ref_5181_RC	129	69	169	92	61	145	87	99	78	129
TGTGCCTCTAGGCTGT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TTTGAGGTTAATGGAC	ref_5181_RC	126	84	135	125	94	125	83	110	85	104
TGGGAGTATCTTTAAA	ref_5181_RC	26	7	25	29	22	28	21	32	15	24
GTTCATCGACCACGAG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TGTCGTCCCTAAGTTC	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TTGATCCATGGCTCGA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TTTTTACAATTTTTTT	ref_5181_RC	54	27	42	35	20	33	22	36	28	38
CTTAGCTACTCACCGG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TAACTCTTTTTTTTTT	ref_5181_RC	22	23	38	35	18	26	20	25	24	23
TTTCGAGTCGCTTTGT	ref_5181_RC	23	11	10	11	11	12	6	25	10	17
CGTTCAGAACAGTTGA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
CAATTGGAAGATAGAG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TGACTATCTAGCATCT	ref_5181_RC	56	55	74	66	40	54	40	73	40	42
TTACCCGGTTCGAAAA	ref_5181_RC	6	4	0	7	3	3	7	4	3	2
TGAGTTGTATTATTTA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TATTGTGCTCGAACAC	ref_5181_RC	12	13	23	24	26	28	17	20	23	22
TCCTTTGTTTTAAGGT	ref_5181_RC	33	25	34	23	33	38	32	24	36	31
CGGGCAGCATGATTTT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TCGCATACGGTCACAT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TCCGCCACTGGTCTGC	ref_5181_RC	105	122	109	104	118	87	137	98	141	83
GTAAATTCTTATGATT	ref_5181_RC	56	34	57	32	42	54	33	34	40	52
CAGTTTAACGACTAAA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TCAGGCAAAGAATTTT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTTCGTGGACTT	ref_5181_RC	28	31	28	20	24	33	23	30	34	20
AATTCTACGAATAGAG	ref_5181_RC	82	59	117	73	75	83	60	84	72	97
CGCGCAATTACGATAT	ref_5181_RC	23	13	18	22	8	17	9	19	16	20
TGGTCCTGTCAATAGA	ref_5181_RC	42	25	41	27	27	30	16	27	28	33
CCCGTGTTGGCTTGCT	ref_5181_RC	19	19	25	28	18	21	32	22	23	30
CGGCGCCCTTAACTAC	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
ATCGGTTGTGGTCTAA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
GACACCGGATCTCCGA	ref_5181_RC	5	10	12	4	10	13	7	12	10	13
AGTCAGGTTTCCTTTG	ref_5181_RC	42	19	47	24	19	32	29	28	19	33
TTATGGTCTACTGGTG	ref_5181_RC	42	23	32	36	19	30	22	21	27	35
CCGTCCTGCACTCTGA	ref_5181_RC	29	15	28	28	14	23	19	30	18	21
AGGCATTATCCATTTT	ref_5181_RC	86	50	90	100	37	79	33	83	48	83
TAGTGCTGGGAGGTTA	ref_5181_RC	69	52	84	42	31	57	31	44	40	52
CGTGCAGGGCGTACAA	ref_5181_RC	330	174	361	275	205	291	184	316	214	295
AATGTGGACCTAAAGT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
CGTCTATTTGATCGTT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TTACCTTTTACAGGCT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AAGCGATGTCGTCCAG	ref_5181_RC	20	15	27	25	22	30	10	22	12	30
TCTCATATTAGTATTC	ref_5181_RC	24	19	34	18	23	18	9	22	22	15
CGGCGTGCCGTTTTCC	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TAGGTAAATTTGACTC	ref_5181_RC	41	20	45	28	22	26	23	30	27	19
GGCCCCGGTTGATCTG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AAAGCAATCGCAGTCG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
CGCCGGGGATCCATAT	ref_5181_RC	23	14	26	20	13	30	17	28	19	30
AAGCTGTCCGGGAATC	ref_5181_RC	9	4	6	10	7	9	9	3	9	15
GTAAATTAGAGCTATT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AATTTTTGAGGTCCTG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
GGGGGACCATGGCCGT	ref_5181_RC	53	30	31	45	14	44	36	47	27	43
CCTGCTAAAGGCGCGC	ref_5181_RC	190	109	212	152	125	170	116	175	109	172
TATCCGTACCAGAGTT	ref_5181_RC	8	10	18	6	11	9	10	6	8	8
TGTAATTAGCCTTTGT	ref_5181_RC	80	24	68	60	30	47	33	57	28	56
TGCACCGAAGTTCATA	ref_5181_RC	23	20	14	8	21	26	11	17	18	10
CGCAGGTCCTGTTCGT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
GATGTTGATATCAGGG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TCGTCATATTCAGTCG	ref_5181_RC	11	2	13	8	10	19	14	7	8	8
GTATAGCCAAAGGCCC	ref_5181_RC	61	59	102	72	52	59	39	66	43	62
CACCTGATCTGTGGTG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AGCTGATATTCCGTCC	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
ACATACCCCTATTCTG	ref_5181_RC	59	26	52	48	47	49	32	58	50	52
AAACTTTGTGGCCCCG	ref_5181_RC	14	7	11	10	10	12	11	18	6	7
TTTGGACGTTCGCGGG	ref_5181_RC	80	52	115	67	51	71	72	62	56	70
TGCTTACAATAAACTA	ref_5181_RC	46	22	41	43	40	48	30	37	34	40
TGGTACTGTTTAAAGG	ref_5181_RC	53	35	59	57	47	58	24	51	41	37
CTTTTGAGTGTATAGT	ref_5181_RC	15	6	13	9	8	9	6	9	8	8
TCGGTGGTTACTCGGT	ref_5181_RC	169	109	222	148	92	169	109	186	125	148
ACATGAGGCTTTTGTG	ref_5181_RC	16	7	17	12	6	11	11	23	8	14
CATTTACCATGGACTA	ref_5181_RC	4	4	9	3	7	3	2	8	4	4
ATATACAGCAAGAATT	ref_5181_RC	87	47	90	70	50	53	39	59	53	60
CGGGACCGATATTGGA	ref_5181_RC	55	26	60	40	38	51	28	54	42	51
GTTATTAATTCCTGTT	ref_5181_RC	107	39	91	105	59	91	70	89	53	60
GGTACATCGTTCCACA	ref_5181_RC	13	11	14	8	7	5	10	12	9	4
GATATTCGGGACAGTG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TCTTGGTGCATCGCGT	ref_5181_RC	56	46	69	71	73	78	51	62	48	66
TGTTCGCTTATTCCGT	ref_5181_RC	103	74	117	92	54	100	56	83	55	79
TCTACCTGGTCGTTGC	ref_5181_RC	30	9	31	19	21	32	20	9	16	16
TCTCCATGGCCGTAGT	ref_5181_RC	12	8	14	5	15	8	6	10	6	7
CCTCCAATGGGATTAT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TACCCAATCTTCGTCA	ref_5181_RC	175	125	225	157	131	159	105	146	130	192
TTCTTCTTTCCGTAGG	ref_5181_RC	29	14	48	30	14	28	19	27	28	23
GACCCCTTGTGATGAG	ref_5181_RC	39	20	45	33	18	48	30	40	24	38
CGGAGTGTGGAGCTCC	ref_5181_RC	26	19	14	25	14	17	15	27	25	21
TTGGATGAGCGATTGA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TGGTCTGCAGCATATT	ref_5181_RC	19	16	38	20	17	22	19	22	16	17
TTTGCTGCGACCCCGA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
CGGGTAATTTACAAAG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AAACTCGCCTAACTTT	ref_5181_RC	69	40	102	77	53	54	37	54	52	71
TTGCCGTGAAGTCTTG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TATCCCAGTCCGCTTT	ref_5181_RC	12	10	15	6	3	17	7	11	5	10
TTGACAACAGACTGTT	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
AAAGTATCCAGCAGCG	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
TCGGGCAAGCTTCTTA	ref_5181_RC	0	0	0	0	0	0	0	0	0	0
CTTCGCGAATAATTGC	ref_5181_RC	72	66	84	72	69	58	65	92	53	83
ATAGGATCACTGTTTT	ref_4770_missing	42	15	36	27	26	31	12	35	21	29
CTTCGACTCAGTAAGT	ref_4770_missing	31	34	37	30	32	46	25	41	30	44
TTTACAGGTATTATAT	ref_4770_missing	104	75	136	102	60	124	51	114	57	112
GGTTCGCGCCATTTCT	ref_4770_missing	0	0	0	0	0	0	0	0	0	0
ACGAGATCAGCTTTCG	ref_4770_missing	34	13	28	20	15	26	10	28	14	25
GGTTCGGGTTCACGAT	ref_4770_missing	9	5	9	12	9	12	11	10	9	12
TCCTGTGCTCGTTTCT	ref_4770_missing	0	0	0	0	0	0	0	0	0	0
GGTACCCGGACCAATT	ref_4770_missing	0	0	0	0	0	0	0	0	0	0
TATCGGTCATGTGGAA	ref_4770_missing	0	0	0	0	0	0	0	0	0	0
CTTCAATTATGGGGTT	ref_4770_missing	69	22	67	67	33	50	40	56	36	50
TTATAGTCTGGGTGTG	ref_4770_missing	12	5	5	11	5	6	7	11	6	8
TGCCACGACTGCTAAG	ref_4770_missing	140	70	166	119	62	121	67	100	85	90
GCTAGCCTCAGTGAGT	ref_4770_missing	19	7	19	27	14	13	10	15	19	21
AGTGATATGATTGGAT	ref_4770_missing	132	77	191	161	63	134	76	155	86	135
TGAGGTAGTTGGCAAG	ref_4770_missing	0	0	0	0	0	0	0	0	0	0
TGCAGATCGTGGCAGT	ref_4770_missing	0	0	0	0	0	0	0	0	0	0
GTGAGGTCTTCGACTA	ref_4770_missing	67	49	88	87	38	77	34	66	29	53
TGGACAATATCCCAAT	ref_4770_missing	54	39	67	76	26	60	30	75	36	49
GTACACGTAAACTCAT	ref_548_upstream	393	138	446	377	124	366	135	354	184	329
AACGCCGTTGCTTACA	ref_548_upstream	56	23	72	52	23	52	22	47	21	44
TCATCGTAGACATGCT	alt_2028_reverse	4	3	2	1	4	2	3	2	2	2
GAGTCGCGGCGTTTTT	alt_2028_reverse	10	8	11	2	4	10	3	0	2	5
TAGCGTGGCTCTGAAC	alt_2028_reverse	34	30	31	35	35	30	37	32	40	39
ATCCAGGTCTTTTATT	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
GCATCGGGTAACCTTG	alt_2028_reverse	51	53	71	51	61	42	46	56	58	53
GATTAACGACACTTGG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
CGCCGGTACTGTCTTA	alt_2028_reverse	9	12	12	12	11	8	7	11	11	8
TATCATCGTCCTTCGT	alt_2028_reverse	75	106	73	93	90	67	110	65	100	78
CCCGAAGGCGCTGGCG	alt_2028_reverse	36	49	67	58	47	48	49	48	68	40
GGTGTTTCCGGAGCCC	alt_2028_reverse	10	3	11	12	8	8	15	5	12	12
TTTCGAATGTTTACTC	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
CTATTAGTTCGTTCGT	alt_2028_reverse	10	12	13	9	14	9	12	9	13	5
ACAGAATGGCAGGATT	alt_2028_reverse	50	51	64	73	51	55	61	43	58	49
TTAGAGTTCTACCTTT	alt_2028_reverse	6	6	2	4	3	0	3	4	2	4
CGGTGCAGTGCCGGCC	alt_2028_reverse	0	0	0	0	0	3	0	1	1	1
ACCGGCGGATAATCCT	alt_2028_reverse	5	4	4	1	6	0	2	3	4	0
CGGTAATTTTATTCTA	alt_2028_reverse	20	23	27	14	19	14	13	23	14	18
GCCGAAGGCGCATGAT	alt_2028_reverse	16	8	14	11	7	7	19	15	21	16
TTCTGCCTGCGACACG	alt_2028_reverse	33	22	38	26	43	32	33	26	36	21
TTTGGCGCGACATTAA	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
GACGCTCAAAACGTAG	alt_2028_reverse	24	23	40	34	36	23	27	29	26	14
GTTCCCGTGGATGGAT	alt_2028_reverse	33	39	30	33	40	42	40	29	36	38
TTTTGCCATTCGAGTG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTCGCCGCGGGAC	alt_2028_reverse	62	79	67	58	76	63	76	47	91	69
CATTGTTAGTCGGAAT	alt_2028_reverse	14	35	26	22	25	26	25	17	25	25
AGGAGTTTATTCGATA	alt_2028_reverse	38	52	46	35	51	31	49	26	60	25
ACTCGCCACATCTAGG	alt_2028_reverse	87	99	95	90	113	61	106	83	115	92
TTAAGCATGAAGGTTA	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
GTGTGGAGGTACGTTT	alt_2028_reverse	31	44	52	36	42	46	42	29	39	27
CTTACGATTGAAATAG	alt_2028_reverse	31	55	23	29	57	23	52	19	50	19
ACTTCTCTGGATGGAG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTTGAGTTGATCG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TCATTATAATGATTGG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
GTCACATGCAGCTATT	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGGTCTATCTTAC	alt_2028_reverse	0	2	3	2	2	3	2	1	5	2
TTCATTCCGCTCCTAG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTTGATCACGACACAA	alt_2028_reverse	23	29	34	29	20	32	36	23	24	33
TTTAACTTTGGTCACC	alt_2028_reverse	5	2	2	7	2	3	3	0	0	7
CCTAGACGCGAACCTA	alt_2028_reverse	46	48	49	47	60	35	61	37	64	37
GCTTATCATCAGGTTA	alt_2028_reverse	21	34	34	21	23	16	20	19	34	29
GACGTGATTTGAAGCT	alt_2028_reverse	56	42	63	44	69	45	52	32	78	46
CCGCCGTATAGATGAA	alt_2028_reverse	62	55	69	64	54	49	65	59	52	57
GCTTTAATGATTTGAT	alt_2028_reverse	47	65	57	40	52	45	61	39	52	47
GTTGCACCCCTGCAAC	alt_2028_reverse	45	62	49	57	64	56	49	23	59	45
TTTGCCGATCGACACG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
CTTCCAAAACGCAGAG	alt_2028_reverse	28	14	12	5	18	16	23	12	27	8
TGAAAGTTTCAGCGAG	alt_2028_reverse	23	19	33	19	33	19	22	17	20	16
GCTAACCTCACTCTAT	alt_2028_reverse	8	8	5	8	11	5	8	7	17	5
CCTTTCCACTGCTGAC	alt_2028_reverse	23	43	38	26	49	28	39	31	46	28
GGCATTGGTTTTCGCC	alt_2028_reverse	14	12	19	7	26	14	17	18	20	10
CCCCATGGAGATCTGC	alt_2028_reverse	70	52	86	72	75	73	62	67	72	65
TCTTGGCATCGCAGCG	alt_2028_reverse	21	29	30	27	21	22	25	8	30	21
GTCTCACCCATTCATA	alt_2028_reverse	130	150	135	122	170	117	166	133	147	115
GCGGCCTAGTTTGGAC	alt_2028_reverse	88	72	79	67	61	62	58	62	88	51
TCCGCTGTAGGGTGGA	alt_2028_reverse	39	79	56	40	50	57	51	36	58	44
GATTTTCGCCTCAGTA	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTATAGGCGTTTA	alt_2028_reverse	382	436	496	362	431	411	478	382	480	317
AGCTGAGACCGTTGGC	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
CACGACATATGCGGGC	alt_2028_reverse	35	37	50	30	44	26	38	29	26	30
CCGCTGCGGGTTCTAT	alt_2028_reverse	0	6	3	1	5	1	2	5	7	2
CCGACGGTGAGCCTCT	alt_2028_reverse	34	32	31	27	32	24	32	24	27	22
TAGTTAAAATGTCACG	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
AGCTCGACGCGTCACT	alt_2028_reverse	70	86	91	82	78	70	86	56	105	77
TGAATACTGTCTCGGG	ref_2028_reverse	102	133	134	128	112	83	136	101	137	105
TTGGACTACTCCGTAT	ref_2028_reverse	115	124	99	81	162	70	136	90	137	76
CCTCTAGCCTCACCAC	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAAGAGAAGGGTC	alt_2028_reverse	30	31	37	31	39	24	38	21	24	29
ACATTCAGTATGTGCG	ref_2028_reverse	136	173	167	154	209	132	185	112	216	126
TACGGCCTCGTTTCCT	alt_2028_reverse	1	1	1	1	1	4	3	1	6	2
TTCCCCGTGGGTTGCA	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCCACACTTAAGG	alt_2028_reverse	25	28	39	23	43	25	38	32	27	27
GGTGCGTTGCGAGTGG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
GAGTTTTCTATAGCCG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGTTTCAGTTACT	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTTTGACGCCGCT	alt_2028_reverse	53	77	72	62	82	57	72	60	75	79
GCAGTTCGTGGTTGGA	ref_2028_reverse	15	20	16	11	17	20	20	12	29	18
TTCGACTCTTCCGTAC	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTATAATCGGCGTCAA	alt_2028_reverse	29	35	22	32	35	22	27	27	24	26
CCCTTTATTCCCCCCT	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
AATGGCTGCAGACGTC	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
GTGTATATGGTCAGCT	alt_2028_reverse	13	15	22	20	41	12	20	18	28	16
GGCTCAAGCACTGTGG	alt_2028_reverse	120	154	131	125	150	97	176	112	150	103
CAATTATATGTCACGG	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
GATTTAGTCGGTGGTA	alt_2028_reverse	35	32	40	41	36	36	38	27	29	31
ACGCTCTAAGAGCCGC	ref_2028_reverse	26	36	29	38	42	30	40	32	43	23
CAAGGTAGCTCGCCTT	alt_2028_reverse	124	144	127	110	113	117	121	107	167	105
TGCGTCTGTGCATGAC	alt_2028_reverse	34	60	50	42	53	39	54	38	48	27
AGGGTAGAATACATGG	alt_2028_reverse	68	76	76	60	46	59	61	56	71	75
TGTTTTCGATATGGGC	alt_2028_reverse	29	33	35	34	19	36	30	19	26	23
GGATTCAACGACCCTA	alt_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTAAACGGACTTT	alt_2028_reverse	29	30	34	30	32	26	25	24	28	24
ACGATAGAACCTACAT	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
CGACCTCGGGATTATG	alt_3303_RC	11	15	13	13	11	16	15	23	11	7
ACCCCCGATTTTTTTC	alt_3303_RC	51	52	60	33	76	32	56	60	84	38
ATCGTAGGCCTGTTTA	alt_3303_RC	14	16	23	23	20	19	6	19	14	14
GAACTATGCGGAAGTA	alt_3303_RC	138	101	170	126	100	133	107	134	107	133
CTATTACTGCGTTTCG	alt_3303_RC	85	97	89	105	96	105	82	75	86	88
TGAGTTTGATCACCCC	alt_3303_RC	13	14	10	10	11	7	6	5	7	5
ACCGGTGCATTTTGCA	alt_3303_RC	11	8	14	10	12	4	13	6	18	7
GATAAGAGGCCATGGT	alt_3303_RC	23	16	13	11	11	22	8	12	21	17
TATTTTGTAGCGCTGA	alt_3303_RC	34	47	41	28	19	36	35	48	41	35
GGTTGACCTCGTGGGC	alt_3303_RC	2	5	1	0	4	3	1	1	3	5
TGCGCCTATGATCGAT	alt_3303_RC	9	12	22	15	11	15	15	6	14	16
ATGTAAGTGGCAGCGA	alt_3303_RC	21	10	34	22	6	18	11	16	21	9
ACTATTTTTTTTCCAC	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
AGCCTCATGGATCGTC	alt_3303_RC	21	17	22	23	17	19	26	14	20	10
AGTTTTAGGCCTGTAG	alt_3303_RC	100	100	132	111	118	94	113	81	113	94
CTCAGGGCACTAATGT	alt_3303_RC	11	8	12	12	5	8	4	3	13	11
TAACGAAGGTGCCTTC	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTTCCCGGTCGC	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TGCTAGATACGTAAAA	alt_3303_RC	10	6	6	1	2	3	4	3	3	6
GTCAATATGTGTCAGG	alt_3303_RC	12	21	15	14	21	13	14	7	15	13
TGCCTCCGCCTTGAGG	alt_3303_RC	52	49	51	55	53	49	37	47	51	46
CTTCCTGAAAGCGGTG	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TCTTAACCGAAGAAGG	alt_3303_RC	63	47	63	73	65	38	47	54	35	51
CCGTGACTGCTGATGC	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
CAGTCTTCTAGGGATA	alt_3303_RC	56	49	68	66	63	69	50	56	49	47
GGCTCCAGCTCATTCT	alt_3303_RC	0	3	0	1	2	1	1	1	1	1
CGTGCCATATAGTGCA	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TCGCCGCACTTAAACT	alt_3303_RC	38	34	48	28	42	34	46	44	35	34
TAGTCAGCTTTTACGT	alt_3303_RC	57	44	66	66	59	59	45	66	63	77
ACTGTGGCTAACTTGA	alt_3303_RC	28	22	28	53	20	43	41	31	24	22
TGAGCACATTTAGTCA	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TTCTACCGCTCGTCGA	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TCGAGGTCTTATAGGG	alt_3303_RC	132	124	142	124	128	98	118	125	126	108
TTCTCGCAGTTCTGCT	alt_3303_RC	12	19	20	21	17	23	20	13	12	13
CTCAGATTGCTTCGCT	alt_3303_RC	1	11	5	2	15	4	13	11	10	3
GGCACTTGCTTTTCGC	alt_3303_RC	13	10	11	9	13	14	13	5	11	7
ACCAGGTCCCTGGTGG	alt_3303_RC	14	18	17	26	21	19	17	10	18	18
CTGTTCATGGTCCATT	alt_3303_RC	17	19	21	20	16	16	25	15	31	18
CAAACTGCACGGGGGC	alt_3303_RC	15	9	8	11	22	25	17	18	8	18
TCCGGGGTAGGATCCG	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TTCTACTACGGCATGG	alt_3303_RC	29	50	36	31	41	36	30	32	47	24
CACCGGCCAATACTCG	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TCATGTTAAAGAACGG	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TCATCTGACCGTTGTG	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
GTCACGTATTTTTCCA	alt_3303_RC	29	19	46	48	23	21	30	23	29	24
TGGTCGTTATCGGTGA	alt_3303_RC	2	7	4	3	4	1	5	3	7	2
GGTGTCAGTATTTCTG	alt_3303_RC	13	11	13	19	7	17	13	16	10	17
AAAAACTTTACTCCGC	alt_3303_RC	0	0	0	0	0	0	0	0	0	0
TAGGAACACGGTGGTT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TATGCTATCGGGACTG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GGGTCATGGCTAATTA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
ATGAATCAGTGTTAGT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GACATATTGAGCGTCT	alt_5652_new	5	9	3	2	4	3	7	7	3	7
CAAAGGGTCATATGAC	alt_5652_new	0	5	5	6	3	0	1	5	3	1
TGTTAATTTCGGGGTA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TGTTTTGTAGAGATAA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CTCCGCTCTAGGTGTG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GGATAGGTAGGTGGCT	alt_5652_new	12	17	15	15	15	16	25	15	12	5
AGGTGCATTTTTTACA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TATTAATATTCCATGC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CCTCACCGTCGGTACG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GTGGCTTCACCGAGTC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CCTGCCCGATCTTTCA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CTGGTGCCATGGTTAC	alt_5652_new	4	13	5	5	7	3	10	5	8	9
AAATAGGCTTTCCACA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TTCGCAGATGTGCAAT	alt_5652_new	5	5	2	0	4	0	12	2	3	1
TAGGTTTATACCCCTG	alt_5652_new	6	11	11	5	8	7	7	3	8	2
TTAATACCGTTTTGGG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TGCATGGTAGGCAGTC	alt_5652_new	3	10	10	7	8	8	11	11	6	9
CCAGTTCCCACCATTT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TCGGAACTGCCTCCAC	ref_5652_new	10	14	16	16	12	13	13	12	16	18
AGCCTTTACGGTCAAG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GTGACCCTCGGTGGCT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
ATTCCTGCATTCTCTC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CAATAGGACTCCAATC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TATATCCTACATCGTA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
AGCTTCACCGGCCTGG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GATAATCTTAGTGGGT	alt_5652_new	14	9	7	11	7	7	13	14	11	10
TCGCTTAATTTACGTT	alt_5652_new	18	18	20	9	8	7	20	17	12	16
GTAAAAGGCTGTCCAC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CACCGTGTTACCAGGT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CGACGTTAGTGTGCGT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
AGTTCACACCACGAAC	alt_5652_new	3	5	2	2	9	1	6	2	0	0
TCGGCAAGTCTGACCG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
AAAGTAGCTCTAAAGC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTGCGTCTCTG	alt_5652_new	1	2	4	4	3	2	3	1	4	1
GGCTCTTATCATTATA	alt_5652_new	2	4	1	3	4	3	3	1	2	3
ATGGTCTGCTCCTATT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GATTCAGAATCACCGG	alt_5652_new	8	11	13	12	11	10	9	16	13	9
GAAGAGATTCGAACCG	alt_5652_new	9	9	9	10	13	10	12	8	19	5
CACCCCTCTTAGTCAC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
AAACTGCCTTCGATGT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GTGGCTACTACTCTTG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GAAGGCTCTCTCAATA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TCCGTCCGCTGAGTAC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GCCGTTCCCTAATCAG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CCGGATTTGATGCGAC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
AGAGGTTTATTAGTGG	alt_5652_new	6	12	4	12	17	8	18	7	12	6
TCTACCCACGCTCGTG	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CAGCAGCTGCAATCTT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
ACACCAATTTGGAGAG	alt_5652_new	1	1	1	0	7	1	6	0	0	0
TCAGTTGTCGCTTGCG	alt_5652_new	3	7	5	6	12	5	12	5	9	2
TATATCCGTCATTAAA	alt_5652_new	0	0	0	0	0	0	0	0	0	0
GGGAAGCTAGTCCGAT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
AAGTCCCAAAAGCGTA	alt_5652_new	4	8	0	1	2	1	6	5	1	2
CTTTCGCATGTTCCTC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
TTCGATTGTGTGATGT	alt_5652_new	0	0	0	0	0	0	0	0	0	0
CGTATTATTTTCGCCT	alt_5652_new	2	3	6	4	0	4	3	2	2	1
GGGGAAAAAGGGGACC	alt_5652_new	0	0	0	0	0	0	0	0	0	0
AATTTCTTAAGAAAAA	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TCATAATCAGTGTGAT	ref_4000_reverse	64	41	49	40	43	43	46	38	53	34
AGTCTTGAGTGTCAGA	ref_4000_reverse	27	50	37	36	52	29	49	32	39	27
AATTCATGTGTTAAGT	ref_4000_reverse	13	15	11	8	11	5	10	8	16	9
TGGGAGCAAGCGAACT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGAGAACAAGCCG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
CAAAAGACGAGGTTCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TGTAAGATCCCCCCCC	ref_4000_reverse	19	17	11	19	12	11	15	1	13	11
GACTTCCGTGTAGTCA	ref_4000_reverse	43	57	69	42	37	52	62	45	74	41
GTTGAAGGCTAACTCA	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGGAAACTCGCCT	ref_4000_reverse	9	12	14	11	14	11	11	7	17	11
TAACTTCCGGCTCATG	ref_4000_reverse	27	44	44	41	47	35	45	35	50	29
ATCCGCGACGGACGTT	ref_4000_reverse	21	13	15	24	28	19	19	9	23	19
TAAGAACAACTGCCCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAACCAAACAGAA	ref_4000_reverse	16	22	25	12	24	15	33	23	41	22
TCCACTTCCACTTTAG	ref_4000_reverse	2	3	0	5	8	4	11	3	4	4
ACCGGTCCTGTGGGCA	ref_4000_reverse	5	3	10	9	10	6	10	4	8	6
AATTTTTATCAATAAT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TATCGAATTATCTTTC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TCCATGTGTTGGCTTT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCGAGCTTGAACA	ref_4000_reverse	37	74	51	39	58	56	57	35	52	34
ATATGTAGTGTGTCGC	ref_4000_reverse	33	46	25	30	55	30	35	26	43	36
GGGACAACAAACCTTT	ref_4000_reverse	15	30	23	11	32	12	36	12	29	24
CACATGGTATTGTTAT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCTGATGTCGCGT	ref_4000_reverse	10	13	13	9	13	5	10	10	6	11
GTATTGATCAGGCCGT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCATAAATCTCTG	ref_4000_reverse	12	24	9	13	28	13	16	18	20	8
AGCCTAGTTCCATTGT	ref_4000_reverse	19	25	12	10	13	8	13	7	26	6
ACGTGGTATGTGGCGT	ref_4000_reverse	4	4	0	4	8	3	5	0	5	2
TGATAATACAGCCTCG	ref_4000_reverse	3	8	5	2	8	3	8	6	5	2
CATACCAAAGTAGCAT	ref_4000_reverse	36	57	36	40	42	39	42	28	58	34
TTCTCCCGTACATCAC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GCGCGTCATGCTCTGC	ref_4000_reverse	11	20	23	13	16	11	14	11	20	13
AACATGCATTCCTGTC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGGTTCTTGGTTC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTCCAACTTGCTGAAG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GCGGATATGACTTATT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGCATTTTTCGGTCGG	ref_4000_reverse	73	76	70	65	80	73	83	58	95	46
CCTATCGTTTTAATTC	ref_4000_reverse	7	16	4	3	4	7	7	12	10	5
TGACAAAGGGCATCAA	ref_4000_reverse	1	2	4	5	4	2	1	3	2	6
TCGAGAATCGCTACAC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCATCACTTCCGA	ref_4000_reverse	37	56	37	39	60	30	62	34	51	38
AGCAGCGTCGCGGTAG	ref_4000_reverse	0	1	3	5	3	0	6	1	6	1
TTATTCGGTGGGGTCT	ref_4000_reverse	8	4	6	9	3	2	2	7	12	3
CTTTAAATCTCTGGAT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTTTGGCATGACGCTC	ref_4000_reverse	63	79	88	63	79	82	86	64	82	51
GGTTTCGTTTTGTATT	ref_4000_reverse	26	34	51	43	41	43	37	30	45	29
TTTCTTGCAGGGCGAT	ref_4000_reverse	65	63	63	64	79	59	72	47	74	58
CAGCCTTGTGTTCGTA	ref_4000_reverse	6	31	10	22	32	7	30	15	37	12
CTCATTGGATGCGGAT	ref_4000_reverse	14	18	27	18	20	19	24	12	32	11
ATTACTATAGGTCTCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
CATAACCTCGTCCAAC	ref_4000_reverse	22	40	30	21	41	17	45	21	30	35
ACGAACGCCGGTTCTG	ref_4000_reverse	13	12	15	10	24	9	12	13	20	8
TACCCTTAATACCTTA	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TCCAATAGATTGCGTG	ref_4000_reverse	52	62	54	41	60	49	77	51	68	58
CTTTCGGTTCAGCCGT	ref_4000_reverse	33	46	43	43	60	39	60	48	59	27
GTCTTGTGGATTCGTT	ref_4000_reverse	31	45	36	30	39	33	37	33	52	32
ATTGTCACAGGCCTTT	ref_4000_reverse	84	115	112	73	113	73	124	71	122	81
GAATGCAGATAAGCGT	ref_4000_reverse	22	20	12	9	21	14	23	18	25	9
TTTAATTCAAACCTGT	ref_4000_reverse	55	100	81	56	87	72	99	70	105	61
AATTCTTTTTGAGGTT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TACTGAGTACTCGTAA	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TAAGCTGCCGTGTTTG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TAGGTGATAAAGCCAT	ref_4000_reverse	15	14	9	12	18	9	20	19	7	10
GTTCTTGGACTTGCTT	ref_4000_reverse	7	7	8	5	8	5	7	5	6	4
CTTCTTGCGAATCGCA	ref_4000_reverse	86	114	105	89	126	83	120	74	152	87
AAAATACCTAATTCCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GTATCCGCTCATTACT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GTCCCACTTGAATCGG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTGTAATCTGTAG	ref_4000_reverse	22	30	20	19	32	22	37	20	45	25
TGGTGCAAGCCAGTTG	ref_4000_reverse	13	23	16	12	21	7	16	14	20	17
AAGTCACACTCGCGTT	ref_4000_reverse	11	28	19	10	23	11	18	13	18	7
GCATCATAGTTCAGTC	ref_4000_reverse	4	14	11	12	13	4	9	9	10	3
AACGTACAGCCCCTCA	ref_4000_reverse	16	38	31	25	32	17	34	21	49	20
CGTCCGGGTCCATGGT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
CGTAACGACTTTTGTT	ref_4000_reverse	35	47	43	52	56	33	45	39	55	35
ATATGGTATACCTAGC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTTCGTTCAAGGATTC	ref_4000_reverse	3	7	9	10	6	5	8	4	18	5
ACCTTGTCCCACCCCG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TAATGAGTAAGTCCCA	ref_4000_reverse	18	26	27	15	25	19	25	19	20	21
TTTTGGCCGTCGACGT	ref_4000_reverse	38	72	48	50	74	52	81	47	73	52
TTTCCATCTCTCCAAT	ref_4000_reverse	13	25	20	14	29	18	41	23	30	17
AGAAGGCTTATGGATC	ref_4000_reverse	19	25	16	5	32	16	26	16	23	12
CCACACTCTTCTTATT	ref_4000_reverse	24	38	30	38	41	24	56	18	52	28
GTTATTATTATTCTTG	ref_4000_reverse	13	5	9	10	9	9	12	11	7	5
TTTTACAGGTTAGGTG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TCTCAGCTTCATTGGG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
ACCAGTATGACTCTAC	ref_4000_reverse	8	10	6	2	11	2	14	4	20	6
CTAAGCAAAAGAACGC	ref_4000_reverse	2	1	1	1	4	3	2	0	2	2
GCGACCTTCTTACAAT	ref_4000_reverse	18	19	17	12	17	11	20	9	17	16
TACGGGGTGGTGTTGA	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GGAACTAATGCGCCGA	ref_4000_reverse	30	21	30	12	32	35	37	18	32	16
TACCGTATCAGAAATC	ref_4000_reverse	3	10	10	8	18	1	13	8	8	7
AATTTGTCAGTGTTCA	ref_4000_reverse	35	64	41	42	53	35	70	49	61	28
CGTTTGCCATCTCATG	ref_4000_reverse	7	12	11	12	20	6	23	7	15	6
ATGGAACAAATCAGGC	ref_4000_reverse	36	73	73	57	66	61	78	42	91	49
CCCAGGGGTTGCGACC	ref_4000_reverse	10	6	6	11	13	7	10	6	11	10
CTCCTGGCTCGATTAC	ref_4000_reverse	23	30	20	17	24	20	18	9	16	20
TCGTAGCTCTTATGAA	ref_4000_reverse	10	13	11	6	18	9	19	8	16	6
GTTACCCAGTAGCCCC	ref_4000_reverse	9	12	19	10	25	18	20	11	15	16
GTCTCCGAATTGACTC	ref_4000_reverse	18	38	25	27	25	15	24	16	37	14
CGATCCCCAGCAGTTA	ref_4000_reverse	69	84	84	85	108	65	103	85	89	66
GTAAGGGCTTCTATGT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCATTGTAGACAT	ref_4000_reverse	22	42	21	28	26	22	38	24	35	14
GTGCAGTATTCTTAAG	ref_4000_reverse	43	39	40	38	40	20	48	26	42	26
GCTTTATATTAGTATT	ref_4000_reverse	5	5	3	4	4	3	3	2	5	4
CGTCTAGTCGGAAACA	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTATTGACCGTGTGAT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GCCGCATTCAGTGTTC	ref_4000_reverse	0	0	0	0	3	0	0	0	0	1
GAAACGTCTGTTTGCG	ref_4000_reverse	59	108	73	67	109	77	86	61	93	60
TCTGGATTGTTATATA	ref_4000_reverse	84	90	95	68	87	78	109	71	114	53
AGAAGTCCTGATCCCG	ref_4000_reverse	5	22	9	10	17	10	16	9	8	12
CTGTTTTTCCAGACTA	ref_4000_reverse	24	69	41	28	54	27	55	40	52	25
CTAGCTAGCAACACGG	ref_4000_reverse	8	6	10	8	12	5	8	11	13	4
TAGGCCAAAGGTCCCT	ref_4000_reverse	20	38	16	16	17	21	24	13	26	18
TGCGAGCGATCAACTT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TGCGTGCCATTTCTTC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GAAATCTACTTATTCC	ref_4000_reverse	3	14	9	8	12	12	19	4	19	6
TCTCTGAGACTCGGCC	ref_4000_reverse	55	77	60	75	69	46	75	47	65	54
TCGGCCCTGTGGTCCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
CTCTCTTCCACGACTA	ref_4000_reverse	28	26	60	44	46	41	46	23	61	34
CTCGGAAGAATCCTCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCTCGCTCTGTAT	ref_4000_reverse	70	87	97	72	109	75	96	77	93	50
CAAATATGTTCTTTGA	ref_4000_reverse	23	94	60	61	80	58	110	56	80	61
ACCAGGCAGCATCTTA	ref_4000_reverse	18	26	25	15	34	14	29	19	28	15
GCCGTTTTTCATCTCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTGGTGTTGATAA	ref_4000_reverse	27	26	38	18	34	32	43	17	34	27
TTAGTTTAAGGTAGCT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTCCTGACGGGTC	ref_4000_reverse	38	43	27	29	34	30	31	24	43	15
GCGGATCTCTCACGCA	ref_4000_reverse	10	9	5	5	6	6	11	9	6	5
GCCGTATCTGCCTGCA	ref_4000_reverse	60	59	45	53	84	55	80	66	81	37
TTAGAGGTCCATCCGT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TGAGCTATAAACCCTA	ref_4000_reverse	24	36	19	27	41	13	33	22	36	10
TGTTGTTATGTTCTAG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TATTGCATGAGGTGGT	ref_4000_reverse	41	58	55	38	59	42	64	41	85	35
GGCATACCGGGATTCC	ref_4000_reverse	2	2	6	1	6	3	3	4	3	4
CGTTGCACAACTTGAT	ref_4000_reverse	78	142	105	117	128	81	156	86	134	91
TTATCACCTCGAACTA	ref_4000_reverse	22	19	20	10	15	6	15	7	29	9
ATGTCTCTCTCGCTTG	ref_4000_reverse	33	48	42	35	42	34	42	31	61	31
ATTACCCAGCTTGTTA	ref_4000_reverse	25	25	25	15	54	13	33	10	27	18
GTGAATATTGTACGCC	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
AGCTAATCGTTGTCTG	ref_4000_reverse	24	26	33	22	31	21	19	17	22	15
TATGATATGTTTGTAT	ref_4000_reverse	9	18	6	6	17	8	10	9	12	3
ACACGAAATAACTCTT	ref_4000_reverse	21	17	13	16	18	9	25	19	13	11
CCCCAATGAGTATATG	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
CGCTCGTTACTGGTCA	ref_4000_reverse	10	22	13	6	23	10	21	9	19	13
GTCCATTATGTCTGTG	ref_4000_reverse	9	34	19	19	37	8	33	14	39	9
CATGTCCTCACCGTTC	ref_4000_reverse	4	6	5	5	3	1	7	4	6	3
TGGCTTAGTTCGGCAT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
CAGCAAACAGTCTTAG	ref_4000_reverse	30	41	31	18	37	17	44	35	51	29
TGAGCTCACTTCCGGT	ref_4000_reverse	0	0	0	0	0	0	0	0	0	0
TAATTAAGCGGGGACT	ref_4000_reverse	11	14	16	22	24	19	19	19	24	20
ATAACTTAAGCGCAAG	ref_4000_reverse	9	13	12	9	13	4	14	10	7	5
CATGTACCAAATTTTT	ref_1095_negative	101	91	115	94	90	85	116	85	109	84
ATCGAGGTGCCAACTG	ref_1095_negative	32	35	35	41	36	19	40	30	44	18
CACTCGACACCCTCAG	ref_1095_negative	3	5	4	3	3	2	1	1	2	7
TCTTCTGTATATCCTC	ref_1095_negative	24	17	20	15	12	24	15	16	15	16
GCCAATGGCGGCCAGC	ref_1095_negative	0	0	1	1	0	0	1	0	0	0
TTTGGGGTCACGTCGC	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
ACCTGATATGTTCAAT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GGCGACTTTTATATCT	ref_1095_negative	10	6	10	7	3	8	10	6	5	6
CGGACTTATCGTTGGG	ref_1095_negative	261	263	347	289	297	259	348	252	328	235
GGGTTCCGTTGGTACA	ref_1095_negative	31	23	38	33	23	34	23	27	27	34
CAATGTGTGGTTCTAC	ref_1095_negative	44	53	47	45	54	32	43	40	60	34
TGTCGTGTTCACATTA	ref_1095_negative	42	46	45	63	51	47	48	42	55	44
GTGTCCTGCTAGCTTG	ref_1095_negative	18	24	18	18	15	15	22	10	24	22
GGCTTGGGAGTCGGTC	ref_1095_negative	86	81	109	67	104	91	92	78	107	86
TCGGATGAACTGGGGT	ref_1095_negative	22	12	26	11	23	13	27	14	18	23
CTTATGAGCAATCCAA	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
TAATTCTATGCCTATC	ref_1095_negative	12	8	19	7	20	17	25	15	11	6
CCTTTTAAGCGCCGGC	ref_1095_negative	1	12	2	4	2	6	10	3	5	6
TTTGGTTACCAGTGTG	ref_1095_negative	2	3	1	5	2	0	0	0	5	3
ACAGCTGGACTTTGCG	ref_1095_negative	15	21	18	11	21	5	29	15	20	15
CGGTCATACACTTGGT	ref_1095_negative	2	2	2	4	0	0	0	2	1	2
ATACGTAGGATGAGCA	ref_1095_negative	42	22	30	27	32	28	30	13	30	19
CTGATTTTTCGTGAAA	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
TGTTAGTCCAGGGTTT	ref_1095_negative	85	135	103	125	120	118	137	98	140	118
ATTGCCACTAATATCT	ref_1095_negative	20	27	27	17	26	15	20	23	19	22
AGTTTACAAATTGAAT	ref_1095_negative	20	18	19	21	9	14	16	18	15	18
TGTCGGCCCGGTTCAA	ref_1095_negative	85	86	96	90	103	72	80	76	101	74
AGAGGGGTCTGCCTGT	ref_1095_negative	43	45	65	47	53	49	55	38	45	46
GAGTCAGCTGTTCGAT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
CTTGGTACATGTGTTT	ref_1095_negative	3	8	9	6	2	4	4	1	5	2
TACTTGTCTGGTGGTG	ref_1095_negative	27	31	19	20	18	21	34	21	39	23
TTCTCCAGCCAACAAT	ref_1095_negative	8	21	18	6	26	16	22	12	30	12
ACGTATCCCTGCGGAC	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
TACCTGCACTTTACGG	ref_1095_negative	6	10	6	5	8	4	10	5	4	3
GATACAATACTCAGGT	ref_1095_negative	28	36	32	29	12	28	29	31	22	17
ATACTCTAACTCGTGC	ref_1095_negative	95	110	106	91	115	85	104	77	127	88
CGGTCCGATCCTAGCT	ref_1095_negative	29	38	27	28	33	43	28	25	47	35
TTTGACTCTGGGTACG	ref_1095_negative	19	23	15	16	27	16	24	20	26	17
AGCTGGATGGACCGCT	ref_1095_negative	29	29	41	24	33	35	45	30	22	24
ATACATATTCCTGAAT	ref_1095_negative	17	10	19	16	6	8	14	6	16	17
CGCCGGAGTTGTCTCG	ref_1095_negative	23	33	37	15	20	24	34	25	27	23
TGATCAACTGAAGAGG	ref_1095_negative	13	9	25	20	10	15	15	15	15	17
AAAACAACGTGGCCTT	ref_1095_negative	79	78	86	91	50	85	66	85	81	96
GTAAGGTTAGATTGCG	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
AGCTCCAATGTCTGCT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
AATTTTCGGGTCACTG	ref_1095_negative	4	9	9	11	10	6	9	9	11	7
CCGGGACGACTATGTA	ref_1095_negative	24	34	39	32	26	25	32	23	40	24
GCTTCCTATACCGACG	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
CTAGATAGACTTTCGG	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GAGTATGTTTCTGCAC	ref_1095_negative	137	129	140	172	149	144	172	122	142	113
ACACAAGATTGAAGAA	ref_1095_negative	7	9	3	4	2	4	6	3	10	6
TGCGCATTTATTCTAT	ref_1095_negative	4	12	7	5	11	8	9	7	6	5
TCAATTAAGATGATTT	ref_1095_negative	53	30	54	45	43	50	41	33	57	30
TGGAAATCCACATATA	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
CTTGCTACATAGGGCT	ref_1095_negative	8	19	19	18	12	9	12	12	11	7
CTGAGAGCCCTGAACA	ref_1095_negative	63	76	86	56	62	64	64	72	67	52
GGTTTCGTGCTAATCT	ref_1095_negative	34	34	48	26	33	40	46	44	34	28
GCTCTTCAAATCGGAC	ref_1095_negative	51	39	39	47	42	37	50	30	55	35
GATCGATCAACGTATG	ref_1095_negative	24	11	32	27	27	34	33	27	26	18
GTTCATGACTACGAAG	ref_1095_negative	40	39	58	41	40	35	42	35	40	26
CGCTCACCGCCTAGAG	ref_1095_negative	24	26	36	19	42	25	39	30	33	14
ATAATGCGCATATGCG	ref_1095_negative	21	10	16	17	10	10	18	11	18	15
TGTCAAGTAACACTTC	ref_1095_negative	21	25	23	16	30	24	26	21	39	17
TTATTAAAACCTTAAC	ref_1095_negative	23	18	27	28	16	14	17	17	21	17
TTGAAATAATCCGTGC	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
TTCATTTTCCTCAGGA	ref_1095_negative	193	216	228	215	216	189	210	215	229	192
ACTCGACGTTTTGGCG	ref_1095_negative	7	4	13	7	7	6	6	4	5	9
AAGCTCTATATGTGAC	ref_1095_negative	21	30	28	24	32	21	33	19	33	25
TTCCGTATTGAATAAT	ref_1095_negative	6	9	11	5	12	8	11	11	13	7
TGGCGTATGCCGATCA	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GGATCAGACTTGCAGC	ref_1095_negative	19	13	22	21	23	20	20	12	15	17
CACATCAGCTTCCGTT	ref_1095_negative	33	16	33	40	23	14	23	14	23	18
CAGCAGTCCCATCGCT	ref_1095_negative	18	9	13	9	7	8	15	13	22	18
GGGGTCGGCCCTTGGC	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
ATTGTCTGGGATGAGG	ref_1095_negative	17	20	23	24	15	20	21	14	22	18
AAACACTCAGATCACG	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GAATTTGGTTGCGTAA	ref_1095_negative	17	23	32	22	20	25	21	32	17	19
TTTGTGCGTTGCGCGC	ref_1095_negative	5	7	8	3	2	2	9	2	3	6
GTGCTCGATCCCTATG	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GAGTTTAGGTAATGTT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GGGTTCGTATCGGTTA	ref_1095_negative	10	14	11	13	14	10	8	11	24	6
CATTCTTCTTTCGGCA	ref_1095_negative	11	8	8	9	15	12	13	12	7	9
GGTCTCGTTTTTAACT	ref_1095_negative	66	90	97	97	73	79	81	68	90	68
AGCATGACCCTTCGGG	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GTGTTATGGTATCGTG	ref_1095_negative	54	79	71	70	73	53	75	51	78	53
GCTTGCCAAAGGCCAG	ref_1095_negative	41	37	50	55	35	37	46	44	29	49
TGCGGCGTGAGCTCCG	ref_1095_negative	31	32	39	53	43	31	36	34	42	20
CCTCTCTGGAAAAGGT	ref_1095_negative	41	47	43	36	32	37	39	24	30	23
TCGTAAACTTTGTCGT	ref_1095_negative	21	27	21	24	19	21	19	24	22	13
TAGGAGCTGGGAAGGT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GGAGTATCTAATTATA	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
TCTTTGTGGACTAGAT	ref_1095_negative	13	21	17	16	19	6	15	12	10	5
ATGTTCCACACTTAAT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
AGCGGAGGTACACTAT	ref_1095_negative	48	25	63	49	35	52	39	44	43	39
GTCACAGTATAAGAGG	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
AGCTGCACAGTTAGGC	ref_1095_negative	66	48	55	50	45	40	54	53	50	40
ATCGAGGATCCTATTA	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
ATGTGTTGGGGTAGTT	ref_1095_negative	8	8	12	9	15	4	7	8	16	4
CGGCGGCGATCGCTCC	ref_1095_negative	110	80	128	92	80	104	94	111	95	81
GTCCTGCTTCGGTTCA	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
CTCCCCACGTTGACAT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
GGAGCCCGGAATGCCT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
AGTTTACGTCTGCTAT	ref_1095_negative	150	132	203	198	165	136	138	149	148	141
TTCATATTTTCTTATC	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
AGTCATATCTACCGAT	ref_1095_negative	0	0	0	0	0	0	0	0	0	0
TCCTACTAAGTCAATC	ref_1095_negative	29	43	44	28	26	22	23	39	23	23
CGCTTATAGTAAATTT	ref_1095_negative	56	60	69	60	63	45	62	54	61	47
AATTATTCCGCTCCAC	ref_1095_negative	9	13	6	6	14	6	7	7	8	9
GTTCTGGGGCCTCATG	ref_2410_missing	82	95	91	78	112	66	120	68	134	67
CAAAGGTGATCGATTT	ref_2410_missing	0	0	3	1	3	0	1	2	2	1
CGCCTTTCGTAAAAGG	ref_2410_missing	0	0	0	0	0	0	0	0	0	0
ACCTCTTCCTTTCCGT	ref_2410_missing	234	270	335	238	265	236	270	246	308	229
GTTTCTCTTCAGGTTG	ref_2410_missing	0	0	0	0	0	0	0	0	0	0
GCGTCCAGCTAAGTGA	ref_2410_missing	78	98	75	67	115	71	93	59	135	50
CGATTTCCTACCGGAG	ref_2410_missing	173	182	180	139	200	168	203	153	220	126
GTCGTGCCGGGAACAC	ref_2283_RC	136	124	184	132	136	140	130	136	123	131
CCGTTGGTGTTAATAT	ref_2283_RC	0	0	0	0	0	1	1	0	1	0
ACTTGAGTTACGCTGC	ref_2283_RC	30	23	27	15	16	16	26	15	20	10
TGGTACGAATGTCGGC	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
CTCTTTTATTTGACAT	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
GACTTCATGGGTGGCT	ref_2283_RC	164	119	176	130	122	127	99	154	107	128
TGTTGCATTGACAAAT	ref_2283_RC	160	137	181	157	156	140	199	156	181	153
GGTTATGGCCCTGCTC	ref_2283_RC	23	24	16	14	12	22	22	19	15	25
AGACGTCGACTGGAAA	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
GTTCGCATCATAGGTC	ref_2283_RC	37	24	29	40	22	24	26	19	35	22
TCTAGGAGGTGGGTAA	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
GTACCCTCACGGCGTC	ref_2283_RC	33	58	45	37	73	30	67	43	72	33
AGCTGCCGAACTATTG	ref_2283_RC	67	65	87	57	83	68	55	66	80	64
TTATGCTCCTAAAAGT	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
ACATTCGGATTAGAGG	ref_2283_RC	66	55	101	59	49	51	50	45	66	52
ATACGGTCACTAATAA	ref_2283_RC	176	175	230	174	196	165	199	140	184	176
GACCCATTGCGTTCTT	ref_2283_RC	10	17	19	13	17	12	16	16	18	15
CCCACCTACCCCGGCG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
CTATAGAAAGTCTGTT	ref_2283_RC	23	23	35	24	22	31	26	36	29	18
AAGCTACGACATGCTC	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
CTCGCGGGAACCCGCC	ref_2283_RC	21	17	25	15	31	20	28	15	37	24
CCTCGGTGTGCAATTA	ref_2283_RC	21	18	24	20	16	21	19	18	17	33
TCCCGTCGGCTTTCGC	ref_2283_RC	13	24	14	10	29	12	12	8	25	11
GAACGCATCGGTTTTC	ref_2283_RC	34	35	47	40	28	38	33	28	24	39
CATCTTATATCTTGGT	ref_2283_RC	234	200	303	225	212	257	176	264	203	230
GCGCTGCTTAACGCCA	ref_2283_RC	19	23	22	21	22	13	15	21	9	22
ATTTACCCGTTCGGTC	ref_2283_RC	29	20	12	24	19	21	33	31	27	28
CGTACGGTATTAGGCC	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
AATCTACTTTCCTCAA	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
AATTGCGTCTGGTTTA	ref_2283_RC	409	397	482	359	346	340	403	360	415	358
CCTTACTAAGATTGCG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
ATCTTGATAAGTTGCG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
TACCTCTCTGTTAGAG	ref_2283_RC	17	10	14	11	24	13	13	18	7	9
CTTCTAAACTTTTGCA	ref_2283_RC	16	14	16	13	15	13	15	6	19	7
TTAGTGTGGCTTTAAC	ref_2283_RC	8	9	17	4	14	16	12	8	18	3
CTGTGTGTCGGAACTG	ref_2283_RC	128	130	158	84	133	118	118	116	133	114
CATCAAGGGTGTGGCG	ref_2283_RC	69	37	81	60	56	74	51	64	99	73
GGAAGTTATAGTACAG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
TCAGTCCGGGTCACAG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
GCCCTTCAGAGGTTCG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
TTCGCTGATCTACATG	ref_2283_RC	41	26	22	22	40	34	24	30	16	20
CTCCACCTTCACTTCA	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
TAGACGCAAACGCGGT	ref_2283_RC	102	103	118	72	83	82	106	71	87	97
TTACACCCATATCACC	ref_2283_RC	81	58	85	70	79	76	83	77	65	87
AAACGCTTAGCGGCCC	ref_2283_RC	213	125	245	167	176	189	143	163	169	172
TAAAGAAGTGCGTGAG	ref_2283_RC	41	40	58	54	34	51	43	40	52	44
AAGTTCAGCATTGGGT	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
TGTCATCGCCGGATCA	ref_2283_RC	222	174	274	173	187	220	190	197	202	194
GTTGAGGTAATAGATG	ref_2283_RC	63	33	63	51	41	60	49	51	47	38
GTAAGCATCGACTCGA	ref_2283_RC	35	23	42	19	26	29	24	22	22	27
AGATCTAGAACAGTTG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
TTTCGCCTTTTCTTGT	ref_2283_RC	64	44	70	64	60	71	57	60	44	59
CGACCGGGCTCTTCCG	ref_2283_RC	8	9	15	14	10	12	5	12	18	10
TTATCGTTCTATCCCT	ref_2283_RC	1	0	1	0	1	1	1	2	0	1
GTAACCCTCATCGCAA	ref_2283_RC	22	23	12	5	11	5	14	10	13	9
AGATTATGGTCCTCAA	ref_2283_RC	19	6	11	17	11	7	7	8	12	12
GCTAGTGACTCGAACG	ref_2283_RC	0	0	0	0	0	0	0	0	0	0
CATTCACGGTTGAGAT	ref_5632_new	0	0	0	0	0	0	0	0	0	0
TCAGTGTCGTCACGAA	ref_5632_new	44	61	41	30	82	34	47	37	55	25
CATGGGAAATCGTCTT	ref_5632_new	0	0	0	0	0	0	0	0	0	0
CTGCCCGTGTCATATT	ref_5632_new	3	5	1	3	6	5	9	1	2	5
GCATGAGCCTTCTTTG	ref_5632_new	26	38	37	30	42	26	42	22	48	28
TGCTCCCGGTCCCCCT	ref_5632_new	23	37	41	27	37	37	45	24	42	20
CTTTAATACAGGCATT	ref_5632_new	12	15	11	9	18	17	38	13	21	23
TTCCCTAGGCGCTTTT	ref_5632_new	0	0	0	0	0	0	0	0	0	0
TTTGCCGGTAGTAAGG	ref_5632_new	21	28	28	25	20	24	24	17	39	14
GGACACCATTGCTCTC	ref_5632_new	3	5	1	5	4	8	8	4	5	5
TATGTTCTAGCGGTCT	ref_5632_new	36	51	33	30	57	28	42	26	43	21
AATCCTCCCGAGCCGC	ref_5632_new	9	14	16	9	20	13	14	6	20	15
GTACTAGATCGAACCG	ref_5632_new	76	132	68	84	139	58	134	55	160	64
GGGGGGGGCTGTTTTC	ref_5632_new	0	0	0	0	0	0	0	0	0	0
TATGCACCAGTCTGAG	ref_5632_new	45	62	30	33	90	31	64	32	61	34
TTCGTATGTCAATAGT	ref_5632_new	7	11	6	6	13	9	16	6	17	9
AAGTTACTGACGCCTC	ref_5632_new	27	52	30	26	41	34	46	28	43	28
ATCGTCTGCTTTTACG	ref_5632_new	12	19	18	17	14	18	25	13	32	10
GGCGGGTAATTGGCTA	ref_5632_new	0	0	0	0	0	0	0	0	0	0
ACGCTCCTGTTTACCC	ref_5632_new	24	40	13	23	34	28	31	13	40	17
TTCTCTAAACGCTCCG	ref_5632_new	4	9	8	8	13	8	4	5	12	5
TTTGAGTAATGAGTCT	ref_5632_new	0	0	0	0	0	0	0	0	0	0
GCGTTGGTGATATAGC	ref_5632_new	7	7	5	6	1	6	7	4	11	6
ACGTGGGGCCCCTGTG	ref_5632_new	14	17	11	11	12	9	21	26	13	12
TCGGCAAATTAAAGAA	ref_5632_new	0	0	0	0	0	0	0	0	0	0
GTTGACATCTGTTTTT	ref_5632_new	14	13	12	3	13	9	11	9	11	7
CCGACGTCTTGGTGGC	ref_5632_new	25	65	29	28	44	21	60	18	50	24
AAATTTTAAAGTCACT	ref_5632_new	0	0	0	0	0	0	0	0	0	0
GTGGCAATAACTGACG	ref_5632_new	30	23	22	18	26	29	24	15	29	22
TCACTTCTTTTTAATG	ref_5632_new	70	102	77	67	110	57	103	64	118	56
TTGGTCCTTTGCCGTG	ref_5632_new	0	0	0	0	0	0	0	0	0	0
GGTATCAGTTATGTAT	ref_5632_new	18	34	21	15	34	19	28	18	46	17
TACTTTGTCCGATTCC	ref_5632_new	0	0	0	0	0	0	0	0	0	0
GTCGTTTTTCCCTACC	ref_5632_new	5	7	8	8	14	10	21	14	10	7
AACAGCAGACGTCCTG	ref_5632_new	0	0	0	0	0	0	0	0	0	0
CCGACCCCCGACTTAC	ref_5632_new	12	14	11	10	19	10	19	11	13	14
ATAGCTATAGCGTAAC	ref_5632_new	20	19	21	17	23	15	27	17	23	8
TCAAATGTCTTACATA	ref_5632_new	0	0	0	0	0	0	0	0	0	0
ATGATTCTGTCTCACT	ref_5632_new	6	17	13	4	18	5	16	11	16	9
CTTCAGGTTCGGCAAT	ref_5632_new	0	0	0	0	0	0	0	0	0	0
CGAAGTGAGCGGCCCG	ref_5632_new	0	0	0	0	0	0	0	0	0	0
GTCATATTTCAGTCGG	ref_5632_new	50	104	64	49	82	80	102	49	91	46
TGTCTATCAAGGAATG	ref_5632_new	34	64	38	45	73	35	64	40	68	31
TTTAACCTCTGGGCCA	ref_5632_new	0	0	0	0	0	0	0	0	0	0
GCGCCCGTTAAGTGTG	ref_5632_new	0	0	0	0	0	0	0	0	0	0
TCACAGGTTGTTAGAA	ref_5632_new	7	12	12	12	15	10	20	5	15	9
ACCCAAGCGGGCCCCC	ref_5632_new	0	0	0	0	0	0	0	0	0	0
CCGCTCTCCGTTCGGC	ref_5632_new	0	0	0	0	0	0	0	0	0	0
TTGTCACGAAAATAGC	ref_5632_new	59	69	62	63	65	47	73	54	83	62
GAATAATTATGCTTTA	ref_5632_new	30	38	33	34	32	21	28	25	35	15
TCAGCGCTGGTCAGTT	ref_5632_new	13	24	22	25	28	11	22	16	30	17
ATTAATGTACGGGTTC	ref_5632_new	0	0	0	0	0	0	0	0	0	0
CGATGGTGCTATATTG	ref_5632_new	0	2	1	1	2	6	4	0	3	0
ATTTCCATCAGGGTTA	ref_5632_new	67	87	87	67	100	65	120	63	120	71
GTCCTTATGGCGGCCT	alt_5083_RC	2	8	6	9	11	3	13	9	8	11
TATCAATATAGTGTCC	alt_5083_RC	13	21	14	17	29	8	24	10	19	13
CTTCCTACGTCGTTCG	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
TCTTTTATCTCGATGC	alt_5083_RC	6	10	10	1	6	3	12	4	10	5
CATGCTTTTTTAACAG	alt_5083_RC	9	12	4	5	6	5	13	6	12	1
CACTTTCATGATTGGA	alt_5083_RC	40	70	45	44	61	36	56	46	60	40
TAACTAACTCGTAGCT	alt_5083_RC	2	12	11	5	11	5	9	3	9	10
TGAGGTGTTTCATATT	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
TTCAGATACTTCCGCT	alt_5083_RC	45	104	62	51	108	61	119	63	90	59
TTATGAGGTTAGGCTC	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
ACCTACTGGCGCCCAG	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
TGGAAACGTCCCAACA	alt_5083_RC	14	25	24	13	24	15	28	14	37	14
TTATGAGTTGTGCGCG	alt_5083_RC	38	70	50	35	83	42	93	41	81	43
TTCCTATAAGCGATTC	alt_5083_RC	8	11	13	10	8	7	19	6	12	6
GTTGCATCCTGGGGTT	alt_5083_RC	6	13	15	15	17	7	16	13	13	11
GGGTACTATGTTAGCC	alt_5083_RC	7	21	6	11	14	9	10	3	20	7
TCATTTTGTGTCAATG	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
AAACCGATACAGTTGT	alt_5083_RC	0	0	1	4	1	0	0	0	1	0
TATATTGAAGACCATA	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
GGGTTGTTAATAGGAT	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
GTTTGGCGTTCGTTAA	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
AGTTTTTGATGGTTCT	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
TACTCGATAACGGTCA	alt_5083_RC	10	18	14	13	16	9	21	10	16	6
TAGGCCGACAGTGTTG	alt_5083_RC	145	265	177	135	253	123	273	123	232	123
GCATTAGCAACTTGGA	alt_5083_RC	3	16	10	6	11	4	14	11	14	8
CGGATCAGCCTCAACC	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
TTTGCAAATAGAGAAT	alt_5083_RC	4	7	6	5	8	7	9	4	15	4
ACGTTACTTTGGACTG	alt_5083_RC	29	69	40	30	73	41	72	28	56	26
CGCATATGTTTAGTAC	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
CGTCCCGGCATCCACC	alt_5083_RC	0	0	0	0	0	0	0	0	0	0
GCAGTCGTAAAAACCC	ref_292_reverse	19	33	24	16	37	20	27	21	26	16
TTCCTTGACTTTTGAA	ref_292_reverse	10	22	20	13	19	23	12	14	24	13
CACCAATCTTGGAACG	ref_292_reverse	39	57	45	43	54	44	50	37	53	36
GCTGCAGGTACACTCG	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TTGATGCTGCACTTTG	ref_292_reverse	9	11	8	4	12	6	9	1	11	10
ACGCGAGACCTGTTCA	ref_292_reverse	21	38	34	34	42	22	31	24	28	23
TACCAGTACTTATTTG	ref_292_reverse	122	232	141	95	257	138	256	118	270	117
CCCCAACTACGTCGGG	ref_292_reverse	16	28	20	15	18	15	17	9	15	11
GTATGCATGCCTGCAC	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTTTCTTTTACTC	ref_292_reverse	7	14	8	9	4	5	3	2	11	10
CTGCTTTTGAGCCTCC	ref_292_reverse	35	46	32	29	53	26	53	19	50	34
TCCTGTGTTTCCAAGG	ref_292_reverse	0	0	0	1	1	1	1	2	1	0
TGCGAGACTTAGGACC	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TTGATCATAACGTTCT	ref_292_reverse	94	172	161	104	175	99	153	103	152	128
CCCTTAATTAGACAAC	ref_292_reverse	24	37	34	19	37	24	33	17	36	23
CGCCAGGTTTATGTAG	ref_292_reverse	14	15	13	11	11	6	10	8	21	10
ACTTTGTCCGCCAGGC	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TAGATGTATCCGGACT	ref_292_reverse	13	31	8	14	12	13	29	8	20	18
TGCCTGGATCTGCCGG	ref_292_reverse	6	18	11	7	19	8	19	9	11	7
GCCCCTAATACTTACT	ref_292_reverse	5	46	11	16	41	6	44	9	36	3
AATCTGGGTTTCGTCG	ref_292_reverse	7	24	9	6	10	7	26	16	20	9
AAGACCAGGTATGAAG	ref_292_reverse	0	4	8	5	3	1	6	1	2	2
TACAAAAATGTGACTC	ref_292_reverse	27	40	38	27	38	32	55	30	44	26
CATCTGTCGGTGGTTG	ref_292_reverse	23	29	25	23	34	28	27	29	36	19
TTAGTGATATTTTAAG	ref_292_reverse	5	13	6	6	7	5	8	8	4	3
TCGCCAAACGTCCTGC	ref_292_reverse	62	85	70	57	69	60	108	45	87	47
TTCTTGCCCGCAAGTC	ref_292_reverse	27	41	30	27	37	32	38	25	41	27
TCCAATACACTTCTGA	ref_292_reverse	26	58	36	26	61	27	55	36	71	26
CATTTCAGCTTTGTCG	ref_292_reverse	28	42	25	40	52	36	45	28	73	30
GGATGGCTTACCGCGC	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTCTGCTCTTATA	ref_292_reverse	19	27	16	7	10	17	14	8	25	10
ATGCGTGACGGTCCGA	ref_292_reverse	7	4	2	3	3	1	6	5	8	3
GTCCCCATCTTATGTG	ref_292_reverse	7	16	9	5	23	11	18	6	12	3
AGTCTTTACAACGAGG	ref_292_reverse	6	16	15	6	13	15	11	9	13	10
TGCTTCCGTGCGTATC	ref_292_reverse	26	26	32	32	31	20	35	20	35	26
CTACGCTCTCTCGCCT	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
GACGTTCGATCGAACG	ref_292_reverse	15	15	12	18	28	18	27	9	14	12
TTACCCGCGTCAAAGA	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTAACCGCGGGGG	ref_292_reverse	17	27	8	10	16	13	15	13	22	14
TTTTGCGAACATTGTG	ref_292_reverse	7	15	10	7	15	12	15	8	17	3
CGAGTTTATTCGCAAA	ref_292_reverse	8	8	12	11	15	16	20	7	12	10
GTGCCACTTCTTGGGT	ref_292_reverse	23	42	26	24	39	26	34	35	34	18
TATGTGCCTGTAACCA	ref_292_reverse	3	6	6	8	9	1	7	6	6	3
ATGATATTAGTACTGA	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TCAAACAATATTTCTT	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
ACGGTAGTTTTTGCCT	ref_292_reverse	96	127	114	84	173	86	149	98	130	82
CTCCGCCATCTACCCC	ref_292_reverse	4	11	2	0	12	2	13	3	9	1
TACGTACAATGTCCAC	ref_292_reverse	20	40	22	17	40	23	45	20	21	16
AATGCGTTAAAACCTC	ref_292_reverse	71	89	84	72	111	66	104	91	114	69
CGCTTGAATGCTCTTA	ref_292_reverse	43	76	69	41	72	54	79	45	91	64
GGGCTAGTTTGTCTGC	ref_292_reverse	26	51	26	25	31	31	38	21	39	25
ATTCAGTCATTGAAAT	ref_292_reverse	9	12	8	8	12	7	13	5	16	7
TCCCTAATACGGTCCC	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTTCGACGCTACC	ref_292_reverse	7	24	11	12	18	12	27	3	33	12
TATTTTACACAGATCA	ref_292_reverse	6	8	9	8	8	5	7	6	6	9
GGGAATGTTAACTTTG	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
AATAGTGTACGGAACG	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
AGCAATGTGTGACTTC	ref_292_reverse	9	19	16	11	12	13	22	16	26	12
TTGTAGATAGATATTG	ref_292_reverse	27	23	31	25	30	26	31	19	29	18
CTAATTCTCTTACAGT	ref_292_reverse	20	29	28	20	27	22	23	24	34	11
GTTCTGGACGTTCCTC	ref_292_reverse	2	16	2	4	12	3	18	2	22	2
AGCATAGGGAGTAGAC	ref_292_reverse	46	58	46	26	62	44	65	26	64	23
GCATCGTTATCGAAAT	ref_292_reverse	70	106	98	78	127	69	110	80	94	74
TGTCGTCTGCTGTTCT	ref_292_reverse	18	20	16	22	24	20	34	15	27	11
ATTTCCTTTGTATCAC	ref_292_reverse	13	10	14	13	13	4	15	2	17	9
ATGTGCTCTTTCGTGG	ref_292_reverse	13	18	6	9	16	6	16	10	9	18
CAAAGCGCTGGTTGTA	ref_292_reverse	56	72	50	42	58	49	66	34	80	32
CATGTAGCTTATGCTG	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
GTCAACCGTCATCTTG	ref_292_reverse	3	6	1	5	11	2	3	1	7	4
CGTACGTTCATTCGGT	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGTATTTCGAGGC	ref_292_reverse	101	145	117	91	153	102	187	92	168	88
TCGGGTCTGAGGGATA	ref_292_reverse	18	27	17	13	30	27	29	14	24	27
CGCTTTTTTCCCGGGT	ref_292_reverse	31	36	36	22	47	30	37	21	50	25
TAAATCATGTACCCTA	ref_292_reverse	13	20	8	19	15	14	19	26	16	10
TCCATGCTCACTATTA	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
CAATCGTCATCTGCTC	ref_292_reverse	3	3	0	2	0	0	3	1	2	0
GTCCTCCGTAACGCCT	ref_292_reverse	15	13	19	10	27	20	23	15	39	11
TGGGTATTCTCCTAAC	ref_292_reverse	44	95	81	68	77	71	85	64	82	48
TTTTGCTGTATGGCTG	ref_292_reverse	1	3	8	3	6	2	6	4	4	3
AGAGAGCGAGGACGCT	ref_292_reverse	8	16	14	13	16	14	21	14	19	14
CGCCCCCCTTCGTAGT	ref_292_reverse	6	14	8	3	10	5	5	8	10	10
CGTGGGCATATGGTAA	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
CATTCTCTCTGGTATC	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TAGATGCATACGTAGC	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TCAGATCTACCGTAAC	ref_292_reverse	8	11	21	11	14	15	18	21	28	16
TGCTCTTATGGTCGTT	ref_292_reverse	13	22	27	19	42	23	14	17	22	15
TGCAGCTCTGTTCATT	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
CATTGGTTACGTCCTG	ref_292_reverse	5	8	7	5	11	5	3	7	7	7
GATAATATGATCGAGG	ref_292_reverse	9	6	1	7	5	3	2	6	4	2
GCCAAACTGTTTGCTT	ref_292_reverse	11	12	15	12	25	6	13	7	19	15
CTTACTCGCCGGCAGC	ref_292_reverse	6	14	18	9	23	15	15	7	14	7
GTTAAATTTTTTGTTT	ref_292_reverse	21	21	32	24	29	22	35	21	31	13
ACTGAGCCACGTTTTA	ref_292_reverse	32	47	41	24	49	19	54	24	44	27
AGCCCACCCGATATTT	ref_292_reverse	26	40	24	32	26	30	26	17	30	23
CCTGTAAACCTCACCC	ref_292_reverse	5	9	3	10	5	5	6	3	10	3
TACCTAGGGTCGAGGT	ref_292_reverse	8	18	11	18	9	14	31	15	14	6
CGAATTTTCCGAATCT	ref_292_reverse	2	3	5	9	8	2	6	2	6	4
TGCCATCAGGCGGATG	ref_292_reverse	8	20	11	14	21	10	17	11	18	13
CCGTGATGGTCTGCAA	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
ATACTCCATCCGCTTA	ref_292_reverse	9	5	5	2	9	5	3	3	5	3
TGGCGCTGATTCGAAC	ref_292_reverse	132	187	160	154	232	131	191	139	233	133
ATTGCATTGTGTCTGA	ref_292_reverse	10	12	12	7	16	10	21	7	16	8
CTCTTTTCTGGCCGGA	ref_292_reverse	2	3	2	6	4	0	2	5	1	1
CTGCTCTATGGTACGT	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGTTTCAGGCACC	ref_292_reverse	46	62	35	31	62	55	68	51	88	52
TTTCTCCATCAATGCT	ref_292_reverse	0	0	0	0	0	0	0	0	0	0
ACATACTGAACACGCA	alt_1839_missing	29	9	31	33	11	27	15	35	13	33
TGCACTGGGTGCTTAT	alt_1839_missing	22	13	32	33	13	29	10	24	24	18
TCCCACTGTCACTCAC	alt_1839_missing	42	17	57	63	22	31	14	36	18	43
GGCACGTGTCCATAAA	alt_1839_missing	89	43	112	101	39	88	28	82	41	85
ATCAGGTACAGAAGAA	alt_1839_missing	40	21	71	44	15	33	14	38	23	46
TCCTTGTAGAATCCCT	alt_1839_missing	34	23	52	29	15	29	12	43	18	29
TTTATCGAGCGTGTGG	alt_1839_missing	47	29	51	64	34	54	28	64	28	54
AAATCGTAGGATCTTT	alt_1839_missing	287	105	303	310	111	247	125	256	130	215
ATTTAGTTCCCATTGC	alt_1839_missing	139	54	156	158	61	120	72	131	95	126
TAAATAACCTTTCCAC	alt_1839_missing	37	25	57	54	16	41	29	37	38	39
CCACGTCGCCTCCAGA	alt_1839_missing	38	19	55	47	35	45	26	50	30	38
TATCGGAGAGGTGTCT	alt_1839_missing	171	99	219	190	79	155	72	192	79	201
ACTCTCAACGAAGTGC	alt_1839_missing	0	0	0	0	0	0	0	0	0	0
GGCCTCGTGTACTTGC	alt_1839_missing	0	0	0	0	0	0	0	0	0	0
AGAGATGTCGTCACGC	alt_1839_missing	0	0	0	0	0	0	0	0	0	0
CAGATGTGATTAATAG	alt_5879_new	97	52	107	61	44	81	63	82	61	73
TCAACCGCGTATTCGG	alt_5879_new	0	0	0	0	0	0	0	0	0	0
GACCTGATTGCCTGTC	alt_5879_new	16	6	21	16	12	16	11	19	12	21
CGTAAAGGGAATCCCA	alt_5879_new	26	14	17	11	12	20	20	16	18	25
GCCCCTGTCTTGTTCG	alt_5879_new	0	0	0	0	0	0	0	0	0	0
TGCATAGCTCTCATTG	alt_5879_new	0	0	0	0	0	0	0	0	0	0
GTGGTCACCTTGGGCG	alt_5879_new	59	27	72	32	28	49	29	56	32	40
AAGTCAACGATCTTAG	alt_5879_new	102	72	93	78	80	81	75	71	76	73
TGAACTTAGAGAGTTT	alt_5879_new	14	9	26	26	25	20	12	21	29	25
ATATGATACATAAGTG	alt_5879_new	11	9	7	11	13	17	8	9	9	8
TTACAGGTCGAAATAT	alt_5879_new	23	11	18	30	20	20	23	37	17	22
GATCAGGTCGATAGGG	alt_5879_new	0	0	0	0	0	0	0	0	0	0
CCGTGGCGAGTGCGCT	alt_5879_new	0	0	0	0	0	0	0	0	0	0
GGCTTTAGGTCGTCCT	alt_5879_new	9	2	11	5	7	5	4	9	2	8
TTCGTTCTGCCTACAC	alt_5879_new	33	20	18	14	13	17	8	19	17	14
GGTAATGTCGGCCTCC	alt_5879_new	133	90	195	124	61	127	67	119	78	132
CACTCTTGTAATTAGA	alt_5879_new	104	109	137	110	88	109	103	90	121	125
AAGTTTATTTGACCAA	alt_5879_new	13	14	10	2	5	5	7	6	3	3
TGCATTTTGTGTATTA	alt_5879_new	0	0	0	0	0	0	0	0	0	0
CTTACTCGACTAGCTG	alt_5879_new	34	9	23	16	14	29	19	17	20	20
CCCAACGTTGACGTGG	alt_5879_new	50	24	47	33	21	32	24	30	36	33
CTGCTGGGCCTATTTC	alt_5879_new	44	21	50	40	27	54	26	39	29	45
TTTACACGCTTCTTAT	alt_5879_new	0	0	0	0	0	0	0	0	0	0
TGTGTTATATATTATG	alt_5879_new	0	0	0	0	0	0	0	0	0	0
TGGGTCTGATTGATTT	alt_5879_new	76	54	78	75	57	55	70	45	69	75
ATTCACATTCTCGATA	alt_5879_new	31	20	23	18	15	21	17	26	19	37
CCTAGTTCACTAGATG	alt_5879_new	34	44	47	43	47	46	43	41	47	32
CTGGGGGAAATTCATG	alt_5879_new	76	58	89	54	57	59	51	48	45	62
GGAAATCAGGTATGTA	alt_5879_new	131	77	173	95	88	131	78	144	100	100
TCCGCTATTCGGATAG	alt_5879_new	0	0	0	0	0	0	0	0	0	0
TAGTGCGATCCAATCT	alt_5879_new	260	163	347	226	166	230	194	187	198	220
ACTGTGGTTGGAGAAT	alt_5879_new	65	48	89	43	36	71	41	66	48	62
ACCGCGGTATTCCGAT	ref_5879_new	64	63	87	47	76	71	62	56	85	50
ACATCGCTACTGGCTA	alt_5879_new	0	0	0	0	0	0	0	0	0	0
CCCCACGCCAATTTGA	alt_5879_new	22	45	27	16	42	20	32	15	50	20
TTCGGCCCGTGATACC	alt_5879_new	0	0	0	0	0	0	0	0	0	0
AACACAGAAGCTCCTT	alt_5879_new	0	0	0	0	0	0	0	0	0	0
GTCCGTATCGTATTAA	alt_5879_new	12	3	5	7	8	8	7	10	6	10
CATTCTTCTAGGCCCC	alt_5879_new	0	0	0	0	0	0	0	0	0	0
CCCACGTTCGCTGATA	alt_5879_new	26	14	32	15	13	18	15	28	21	14
ATTTCTTTATCGTGTC	alt_5879_new	180	93	193	169	100	169	121	136	119	173
TTCCTTGGTTAGGACC	alt_5879_new	4	12	10	7	13	15	3	6	15	6
CCCTGGTAAGAGGTTT	alt_5879_new	17	11	16	8	17	16	16	20	15	13
TTTTCGGTACGCTTCA	alt_5879_new	14	5	8	8	7	13	6	4	10	11
TCATCCGCGGAGAGGC	alt_5879_new	11	13	23	10	8	9	10	19	18	19
TACTTCCGAGTGTCAT	alt_5879_new	0	0	0	0	0	0	0	0	0	0
TGTCTTTGGCGCGTTT	alt_5879_new	11	11	15	2	0	10	10	12	6	7
CTGGTGCGGACGTTCG	alt_5879_new	73	38	91	69	57	78	59	66	58	71
CTAGCCCGCGTATTTG	alt_5879_new	29	24	36	29	17	41	29	30	28	27
CGTATGCGGATCACGT	alt_5879_new	167	99	198	166	117	180	117	146	120	178
GATCTGTATCATTTGC	alt_5879_new	0	0	0	0	0	0	0	0	0	0
GCGCTGTCTCATAGCG	alt_5879_new	19	16	21	12	17	10	9	11	12	8
ATTGGAGTGATCGCGG	alt_5879_new	29	16	40	31	20	26	20	31	28	31
GGTGCGGGTCAGCTTA	alt_5879_new	0	0	0	0	0	0	0	0	0	0
GCCAATCATGGAATTC	alt_5879_new	4	8	14	4	2	4	12	6	5	9
ACATTAAATTGGCGAG	alt_5879_new	25	17	22	28	14	18	16	23	12	20
TATCTCAGTAGGGTAT	alt_5879_new	59	35	73	40	50	54	33	62	44	50
GGCCTCTCGGGGGGTT	alt_5879_new	38	35	56	40	26	34	32	53	34	60
AATCGGCGTCCTCTCA	ref_158_reverse	40	32	47	49	31	32	53	30	35	35
TGTGTGAACTTCTTTG	ref_158_reverse	93	106	145	105	118	86	130	102	131	103
ATAAGTCAGAATTCAC	ref_158_reverse	0	1	7	2	3	2	7	2	7	0
TATATAAACATGTAAT	ref_158_reverse	9	10	18	4	13	11	7	11	11	8
CTCATGGGCGTGCTGG	ref_158_reverse	24	14	28	20	20	16	29	16	18	19
TTCACGACACGCCTCG	ref_158_reverse	33	40	30	37	32	33	32	30	48	36
TTGTAGATATATGTGG	ref_158_reverse	14	29	29	13	18	17	25	29	24	24
GTTGTATCTCATTTAA	ref_158_reverse	69	44	65	61	47	46	49	36	54	51
TACGTCTCACTATCGT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCGGCCGCGTTTT	ref_158_reverse	11	16	16	12	17	7	16	5	25	13
ACAGACATATCATATT	ref_158_reverse	149	134	165	126	150	114	148	98	154	146
GGGCCTAAGAGAGACC	ref_158_reverse	36	39	34	30	40	34	45	30	50	41
TAGACCAATAATCTTA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TCCACGAGTCTGGAGC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TACTCAATTCATGGAA	ref_158_reverse	112	82	133	81	99	101	97	97	105	85
CGTTTTAGGAAGGCAT	ref_158_reverse	63	66	77	84	59	62	73	51	56	54
GAGGCCGTACTGCTGC	ref_158_reverse	28	31	34	19	31	16	23	27	20	16
GATTGCATCCACTCAG	ref_158_reverse	71	86	98	66	93	73	97	76	96	77
CGCTTCATGCTCCACT	ref_158_reverse	135	78	198	148	101	141	86	148	78	130
TATTGGGCCTAATCCA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTTCTGCTCTCGC	ref_158_reverse	14	16	10	13	20	12	18	14	23	3
CGCATGCCGCGCTAAA	ref_158_reverse	13	26	26	28	28	17	17	26	23	22
GTTTCGGGTCTGCATA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TTTGACCGATGAATGG	ref_158_reverse	94	120	129	92	90	105	99	77	107	92
TAGCAGACGGTGTCCT	ref_158_reverse	9	4	12	5	7	10	11	5	10	12
GGACCTCCGGGCAATC	ref_158_reverse	10	9	14	4	8	6	13	9	2	13
TAGCGGTTCGAGTACC	ref_158_reverse	19	12	30	27	16	25	18	20	15	19
TGACATCATCAATCCC	ref_158_reverse	216	167	235	193	171	207	157	162	179	190
TTATCGGCGTGCTTCT	ref_158_reverse	16	12	12	14	9	9	13	10	13	8
AGTATCGACCAAACCC	ref_158_reverse	30	50	53	47	49	50	51	40	58	45
TGGCGTACGGAAGTTA	ref_158_reverse	10	11	17	15	12	13	8	19	11	9
AGCGTCTTCGCGTTAG	ref_158_reverse	43	60	43	49	42	37	41	39	61	43
TGGAGCGCGAACCAAG	ref_158_reverse	30	29	26	30	28	25	26	21	39	25
AGCTACTTTGGCATCA	ref_158_reverse	47	42	30	43	58	44	59	27	43	28
CTTGGATTTTCCGGTT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTAACCTGTCGAATAA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCTGCTTAGTGTC	ref_158_reverse	8	10	13	2	8	4	9	8	6	11
CCGCTTTCGGGGTCCA	ref_158_reverse	0	0	0	0	2	0	0	0	0	0
GCACAATATGCTGCGA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTCCGTTTCATCT	ref_158_reverse	35	25	33	33	32	31	41	23	28	19
TAACCGCGCATCTCAG	ref_158_reverse	14	16	20	22	20	16	21	19	24	29
GAACCTGAATTGGTGA	ref_158_reverse	44	30	55	44	29	38	33	41	47	47
ACGGACGTATTTTATG	ref_158_reverse	3	2	3	0	4	4	3	2	5	3
ACGCTAATCTAGAACA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGAAAGCGTCCTG	ref_158_reverse	495	546	630	515	513	538	480	484	581	509
ATATCGATCTATGATT	ref_158_reverse	204	169	228	201	175	170	164	158	174	154
CCCCGTAGCGATATGC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTCGTGCTGATTGATT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
GCTCCCGTTATATGGC	ref_158_reverse	107	193	100	71	162	65	151	62	200	60
TCATAGATATGCGTGT	ref_158_reverse	11	18	12	17	20	20	10	8	16	10
TGTCGACGTTGGGGCA	ref_158_reverse	49	88	55	51	85	37	101	50	92	47
CCCTGTGGAGTACTAG	ref_158_reverse	31	21	23	22	27	22	24	12	12	21
GGCAGTTCAGCCAGTG	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTCACTGCGCAGCTTA	ref_158_reverse	12	9	9	12	11	20	12	12	10	10
TGGCCATCCCTCGCAC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
ATATCGTTCCTGGGTC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TAAGGAACTAATCTTA	ref_158_reverse	33	19	26	22	26	21	48	14	21	18
ACTCGAAGAATAAGTT	ref_158_reverse	8	4	4	6	6	3	4	6	2	5
CATTATGGATTCGGTC	ref_158_reverse	21	26	21	13	19	22	28	16	26	17
GACGCCACTTTCTAAT	ref_158_reverse	31	22	41	28	31	31	40	30	25	27
CTTCAAGGAGTCACTG	ref_158_reverse	60	56	67	62	70	59	81	57	66	61
GCTTCTGCTACGTCCC	ref_158_reverse	31	26	38	31	24	16	31	26	37	27
ACCGGATGATTTGTTG	ref_158_reverse	99	100	144	105	112	127	101	109	119	96
GGCGCGTATTTCCAAT	ref_158_reverse	20	32	20	30	23	21	24	23	22	17
CGGTTTGGCTAGCCAC	ref_158_reverse	8	10	14	7	8	7	13	4	16	6
TCTACCTCCTAACTTT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTGGATATGTGGTCCC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCTCATATCCCAA	ref_158_reverse	9	13	17	10	18	18	14	8	18	5
TTCGAAAGATACAGTG	ref_158_reverse	88	99	85	58	90	59	83	63	84	63
GCGATTGTTATTCGAG	ref_158_reverse	27	42	30	34	45	28	35	32	33	24
GGGCGAAGTCCAGTCC	ref_158_reverse	14	9	9	12	15	9	9	8	11	6
CATCTAGCGCACACCG	ref_158_reverse	8	20	17	7	17	8	18	5	10	13
TAGCTATACATCCTGG	ref_158_reverse	18	14	15	18	22	23	17	23	15	23
ATGAATGGGGTTCGCG	ref_158_reverse	27	27	39	23	17	26	32	17	31	33
GATCTTCAACAAAAGC	ref_158_reverse	48	25	33	30	41	35	30	21	36	39
CCTTTTTTGTATTCAG	ref_158_reverse	20	22	14	18	15	17	19	14	15	15
GACTTTTTTCCTCCTT	ref_158_reverse	11	11	13	27	10	14	10	14	13	22
ATACATTCGCCTGGTC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTGGTAAACGCGATTT	ref_158_reverse	3	7	12	10	7	6	9	3	6	5
CACTTCGTTTTTTGTT	ref_158_reverse	23	21	34	27	28	16	28	16	27	16
GGGAGGATTTCCTCTG	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGCTATTGCGGGA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TTGGAAGCTTAGGTGG	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTAGGGCTGAATGCTG	ref_158_reverse	9	11	18	9	13	8	20	18	13	21
CCGGCCAAGTTATAAC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCCCGACTGGACC	ref_158_reverse	15	30	14	19	26	10	33	9	31	10
CCTAGAAAGCGTCCTG	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTATGGCAGTTT	ref_158_reverse	65	86	112	67	113	106	88	101	102	95
TTCAACTTGAATTTCC	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
GCTGTCGATTGTCTAG	ref_158_reverse	10	14	14	10	12	8	25	16	20	18
GAAGACACATGCTAAA	ref_158_reverse	72	60	80	80	73	78	60	92	78	58
GCGTTCTTAGGTCATA	ref_158_reverse	2	6	5	2	5	3	4	2	5	6
CGGTGACACGTTTACT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TCTAATGGTAAACGCC	ref_158_reverse	55	36	52	34	38	30	50	26	52	25
TGAGGCCAAATTGATA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTGACTCGTCTCGTTC	ref_158_reverse	6	2	7	8	6	6	3	8	5	5
AGCTGAATTTACTCGC	ref_158_reverse	5	3	6	8	4	7	5	4	4	9
AGCAACGCTTTGCTGT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TTCACATATCCAGAGA	ref_158_reverse	29	17	32	35	17	22	24	24	25	21
CCATGAAAGCGTCCTG	ref_158_reverse	0	0	0	0	0	0	1	0	0	0
CCTGATAAGGCCTGTA	ref_158_reverse	8	5	9	4	5	3	8	4	5	8
GTCTGAGACCTTGCCG	ref_158_reverse	2	3	1	0	2	1	3	0	2	0
CCTCTTCGCCGGTTAT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
TCGACGTGGTCACAGG	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
GAACTAAGTCTCGTCG	ref_158_reverse	5	7	5	2	6	6	9	6	4	3
GATGTTATAATATTAT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
AACCTTGATGTGCTTG	ref_158_reverse	196	152	221	201	170	161	179	177	182	168
CCAGTCGGTTATGGCT	ref_158_reverse	19	28	21	11	33	17	45	26	32	8
TGGTCGATCCCTCTCG	ref_158_reverse	0	0	3	0	2	2	0	0	0	0
AACGACGCATTTTTAT	ref_158_reverse	81	72	108	87	81	61	73	74	75	68
GCGGACAACTGGATAA	ref_158_reverse	91	69	101	95	81	87	97	68	92	77
GACTCTTGATGTTTCT	ref_158_reverse	201	181	264	211	185	189	189	217	237	181
AAATTTATGGTTCTAA	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTGATGTCACTTTGGA	ref_158_reverse	5	7	10	7	11	6	7	13	7	5
CTTCAAGGCGTTTGTA	ref_158_reverse	11	10	34	24	19	25	16	21	21	19
GAAAACCCGCTTGTCC	ref_158_reverse	32	39	28	32	41	25	30	33	43	16
GGCACTGCCGATTTGT	ref_158_reverse	11	15	9	11	7	4	5	11	9	5
TCGTTAGGCAGAGCAT	ref_158_reverse	0	0	0	0	0	0	0	0	0	0
CTGTACCAGGAACTCC	ref_158_reverse	11	12	11	16	20	12	15	17	21	12
GTTGTTCACGGTCGGG	alt_5038_fdr	774	249	666	587	269	540	272	537	258	559
CGACCCTTCCTACGCT	alt_5038_fdr	840	227	1138	969	203	846	191	821	201	753
GATACCTGAACCTTGT	alt_5038_fdr	73	24	116	84	24	78	23	95	19	79
TCTAGTTATCGCGCAG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
ATAATGTATTGGGGGC	alt_5038_fdr	126	32	143	116	19	112	29	95	41	111
CGCTAAAGGCGGATTT	alt_5038_fdr	159	49	194	170	38	148	56	138	45	134
TAACTGGTCTAGATCT	alt_5038_fdr	359	80	399	381	97	350	95	355	109	277
TAGCAGTGAATTCACT	alt_5038_fdr	201	54	261	268	52	214	54	180	56	184
TTTGAAACCGTAAATT	alt_5038_fdr	963	226	1087	922	243	933	230	834	256	756
AGGTGAAGATATTCAA	alt_5038_fdr	523	109	717	577	116	543	129	548	132	485
CGTTTCATTGAGTCCG	alt_5038_fdr	63	19	71	78	16	63	14	67	20	61
ATGCCCGTTGCAATTT	alt_5038_fdr	1143	211	1308	1157	230	1094	212	1052	233	1007
GTCGTCACGGAGATAT	alt_5038_fdr	553	166	670	535	164	551	151	496	144	480
CCTCGGGCAGATGCGT	alt_5038_fdr	387	123	498	452	134	334	108	398	109	333
CGTAAGCGTATGATGC	alt_5038_fdr	295	67	403	313	62	287	79	329	88	287
GTGATAACCACGATGG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
ACCACTTGAGGGCCTA	alt_5038_fdr	52	21	94	67	25	47	12	58	18	57
AAATAGCCTTCACGTA	alt_5038_fdr	556	151	676	609	180	526	137	575	167	473
TGTGCGATTTCACAAG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
CCAAGTCCCCTTCGCA	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCTCATCTTGTCT	alt_5038_fdr	59	8	81	85	11	78	21	65	10	57
TATGTGTGTTCGTCAA	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
CATTCCGTACCCTTGA	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGACAAGACTTGA	alt_5038_fdr	1201	292	1498	1336	303	1135	283	1220	303	1095
AGTGCACGCAGTCGAT	alt_5038_fdr	397	78	429	379	77	352	97	352	83	299
CCAAGTCACCTTCGCA	alt_5038_fdr	1764	729	1642	1532	751	1379	765	1340	814	1374
GGGTAAGGGTGGGATG	alt_5038_fdr	201	46	218	198	48	190	44	185	57	190
TTTTAGGCAAAAGCTA	alt_5038_fdr	188	56	290	214	40	194	39	181	50	170
TTTGGTGTTGCATATC	alt_5038_fdr	69	16	81	46	12	46	10	38	22	60
GCGCTGTTAGTTCGCT	alt_5038_fdr	152	38	170	143	42	121	39	135	42	101
TCTCTAGGATATTTGA	alt_5038_fdr	433	123	576	477	133	501	122	404	133	431
GATATGCTAAACCCCA	alt_5038_fdr	180	37	181	157	27	128	37	148	38	132
ATTTGGGTACGGTGAA	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
CACAGGTTCTTGGGTT	alt_5038_fdr	415	123	457	431	146	368	118	391	116	360
AGAATGGGTTTATTTT	alt_5038_fdr	139	34	196	148	33	150	30	140	41	155
CGTGTGTGGCTTTATA	alt_5038_fdr	75	14	77	72	19	75	16	60	19	77
GCAGTGCTCATCCCCT	alt_5038_fdr	190	66	288	231	58	197	65	212	61	174
ACTGTTTTTACTTCGG	alt_5038_fdr	78	17	103	88	18	68	16	85	22	69
CATGAAGACTGCTTAC	alt_5038_fdr	228	73	297	256	62	218	52	206	54	167
TTCAGACTTTGCTGGT	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
ATTTCAACTACGGTTC	alt_5038_fdr	360	100	429	357	96	323	107	312	132	291
TTGAAGTGGTTTTACG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
GATCCAATTTCCGTTC	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
TCAACAAATACCAGCA	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTCTAATGAACGG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
TTTTGTCTTAAACTGT	alt_5038_fdr	1227	294	1425	1194	286	1158	324	1137	321	1030
GTATTTAAGTACCTTA	alt_5038_fdr	161	34	199	197	48	179	45	167	33	164
AGGTCGTCTTATGCAG	alt_5038_fdr	736	170	898	826	167	751	170	662	198	684
CTACGTGTCCAACTGG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTCATCACCATCT	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
TAAGTGTACTATCTCT	alt_5038_fdr	488	136	643	573	143	493	115	516	116	459
CCAACCAGCCCCCGCA	alt_5038_fdr	40	32	80	74	9	58	19	64	18	59
GAGGGAACTTGTGGAA	alt_5038_fdr	109	30	136	101	27	96	22	89	24	103
GGATAAACACCTACAC	alt_5038_fdr	267	50	275	300	60	249	77	231	80	204
GATGCTCTAGAACAGT	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTTACTTTCATGA	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
GACTGGTAGGGGGAGG	alt_5038_fdr	31	8	41	41	24	40	12	44	9	37
TAAGATATGAGCCAAC	alt_5038_fdr	224	70	273	248	52	228	60	184	55	195
CAGTTGCTGCACTGAG	alt_5038_fdr	18	4	27	27	3	20	6	15	10	17
AAGAACGTATCGCGGG	alt_5038_fdr	162	29	177	158	37	128	40	143	50	116
GTGTTTTTTGAGGACC	alt_5038_fdr	188	78	259	212	93	211	75	200	88	200
GTGTTTTCTCGGCTTC	alt_5038_fdr	45	10	47	55	17	45	10	31	8	33
CACCTACTTGTCGTTC	alt_5038_fdr	167	61	218	188	65	164	60	165	71	160
CTCTGCACGTCTCTTA	alt_5038_fdr	161	39	158	162	53	158	60	144	56	131
TCCCCGCGTCGGATTC	alt_5038_fdr	4	1	13	10	1	7	4	12	3	10
CGGTAGGGCAAAAGAG	alt_5038_fdr	161	45	212	197	55	166	61	190	48	200
ATTTGTCTTAAACTGT	alt_5038_fdr	1	0	0	3	0	0	0	1	0	1
GGTTGGTTGGAACACG	alt_5038_fdr	9	3	17	11	0	7	4	10	1	10
GTCCACTTTGTCGTTC	alt_5038_fdr	291	63	370	283	55	296	50	279	64	226
GTTTCGTTCCGTATTG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
CTCAGTGTACGCTAAC	alt_5038_fdr	167	46	215	176	42	185	41	154	53	129
AGGCCTTTTAGTACGC	alt_5038_fdr	94	23	108	110	23	115	26	83	23	74
TGCCTTTCCTCCCGGA	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGTTCCCCTAGAC	alt_5038_fdr	10	9	13	12	11	7	8	15	12	11
CTACTGTTTTTGTGTG	alt_5038_fdr	72	26	87	92	31	85	35	88	28	85
TCTTAATCTAGGCCGT	alt_5038_fdr	292	71	437	347	76	279	78	282	79	292
GCTATTAATGCTATCG	alt_5038_fdr	238	63	301	304	62	280	64	273	78	222
AGGACACACTCCTACA	alt_5038_fdr	237	100	238	217	95	221	81	206	92	187
AAAGTGCAGTAATTAG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGCAATGTTTTGG	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
AACTTGGCTTTCTCCC	alt_5038_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTAGCGTTCTTTC	alt_5038_fdr	32	11	54	34	11	46	12	55	10	37
CTGTACGCTAATTCAT	ref_1454_reverse	14	7	20	8	8	11	8	9	7	10
TTCCTGCGCGAGGCCT	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
CGCATGATGTTTCGAT	ref_1454_reverse	372	250	476	367	265	321	314	362	337	323
AGTAACTGTATCTGGA	ref_1454_reverse	41	29	44	33	34	39	42	26	39	26
GTGTTAGTTCTGTGTA	ref_1454_reverse	1	6	3	4	4	4	6	6	2	3
CTTGGCCTATGAGTGC	ref_1454_reverse	398	427	405	409	508	400	463	366	484	361
GGAGCACCATACACAA	ref_1454_reverse	24	10	22	17	10	14	9	12	10	19
ATAACATTAGGCATTA	ref_1454_reverse	52	40	97	51	34	41	38	45	49	45
ATTACATTCCTGCACG	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGACTTCTACTCG	ref_1454_reverse	17	16	9	11	16	10	22	10	22	5
AAGTGCCGTCTGTCAC	ref_1454_reverse	33	24	28	32	25	26	21	34	34	25
TAGTTCAATAGATTGG	ref_1454_reverse	8	10	7	6	4	9	7	6	4	7
CATCTCTGTGTCGCTG	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
TTGCCAGTCCAGAGTG	ref_1454_reverse	87	82	119	91	76	97	78	85	94	69
GGCCCCTCACCTGTCG	ref_1454_reverse	72	66	92	102	45	92	65	75	48	74
GCAGCTGTGCATCCGT	ref_1454_reverse	68	57	68	62	46	64	69	50	61	52
TTGATACAGGTCTTAG	ref_1454_reverse	11	11	15	13	12	14	13	13	24	13
GATTTGAACATCCCGC	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCAATGCCATAAA	ref_1454_reverse	6	10	10	6	8	4	8	7	4	6
GGATCGAGCTAAAGCT	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTCTACCTGCTAG	ref_1454_reverse	20	30	44	27	26	28	24	21	29	17
AGCTCTGTCGGTCAGC	ref_1454_reverse	182	157	222	191	169	169	161	123	158	163
AAAGCGCGCGAAATGA	ref_1454_reverse	1	4	2	6	3	5	3	8	4	6
GTCTGTTCGGTGGAAC	ref_1454_reverse	55	78	82	79	65	57	72	61	82	78
TTCGAGATTGACCGGT	ref_1454_reverse	186	190	252	197	180	174	183	189	221	172
CGTAGGGTATTTACCC	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
GCCCGTACTATCAATG	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
GGCATTCTAGCAGGTT	ref_1454_reverse	29	40	45	43	39	40	40	36	42	36
GGAGTGTTACGCAGGC	ref_1454_reverse	65	45	62	54	29	66	31	43	33	46
TGCGCTTGGCTCGTTC	ref_1454_reverse	9	13	21	15	10	13	19	8	16	19
GCTATAGTACTATTAG	ref_1454_reverse	8	4	9	6	6	2	4	3	2	5
GGGCAGTGTCTTCGCT	ref_1454_reverse	8	19	12	12	9	15	12	9	11	5
ATCGCGATAACGTAGG	ref_1454_reverse	122	88	161	137	72	132	99	89	97	99
CTTCCCCTTCGGTGCG	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTGAGTCACTCCA	ref_1454_reverse	10	3	5	4	2	7	7	6	4	3
GTCTGTGAGGTGTAGG	ref_1454_reverse	62	55	59	56	68	65	84	71	63	55
GGTACTAAATTTAGTT	ref_1454_reverse	215	142	232	212	161	203	172	185	153	187
CAACGCGGCTTTTTTT	ref_1454_reverse	129	95	161	117	92	141	101	105	98	104
GCATTCATCATATAGC	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGAATTTCGTTCT	ref_1454_reverse	34	24	41	41	32	30	28	37	36	35
CTATGAGCTAAGGTAT	ref_1454_reverse	28	18	25	39	23	27	13	23	29	25
GCTAATATAACTAGCC	ref_1454_reverse	119	108	141	119	141	120	117	113	120	94
ATTCTTTTTACGATGG	ref_1454_reverse	10	10	10	7	8	11	10	12	11	16
CGGATAGATCGCTATG	alt_1454_reverse	380	351	456	393	355	390	384	347	424	381
GCTTTGCATACACGTA	ref_1454_reverse	0	0	0	0	0	0	0	0	0	0
CCTTACATGCAACGGT	ref_1454_reverse	17	15	36	39	22	19	21	26	18	16
TTCTAACTTTGAATTC	ref_1454_reverse	34	29	45	33	28	39	28	40	23	34
TCACAATAGTGCCCTT	ref_1454_reverse	91	67	103	92	63	65	63	88	83	74
GTGTTCTATATCCGGT	ref_1454_reverse	108	118	152	104	104	101	103	126	119	112
CCTGACCCGTGCATCT	ref_317_missing	7	18	8	6	26	6	17	7	9	5
GATATCGATCGTCTTA	ref_317_missing	0	0	0	0	0	0	0	0	0	0
GAATTTTCGTGAAGAG	ref_317_missing	0	0	0	0	0	0	0	0	0	0
CTAGTGATACGGCGTG	ref_317_missing	7	7	3	1	6	4	8	3	10	3
CACGCTACCCAATCCA	ref_317_missing	36	58	68	36	79	39	62	29	80	39
CGAGGGACTACATATC	ref_317_missing	0	0	0	0	0	0	0	0	0	0
GCACTCACCCTTTTAA	ref_317_missing	0	0	0	0	0	0	0	0	0	0
GTAATTCTAATGTGAC	ref_317_missing	18	23	27	15	13	21	22	19	17	13
ACGCCCGATACGTATG	ref_317_missing	0	0	0	0	0	0	0	0	0	0
TAGGCTAACCTCATTA	alt_317_missing	0	0	0	0	0	0	0	0	0	0
AATAAAGGATCAATAC	ref_317_missing	12	30	18	12	20	10	18	12	15	8
ACTGACGAGTTTGGAC	ref_317_missing	0	0	0	0	0	0	0	0	0	0
CGCCCGGTCCCCTGTA	alt_317_missing	17	42	20	20	46	30	49	21	55	17
AGATATTCGTATGACT	ref_317_missing	0	11	5	1	4	5	4	3	6	2
TCGTTATTGTCTTCAG	ref_317_missing	0	0	0	0	0	0	0	0	0	0
TTAGATAGCGCCGGAG	ref_317_missing	15	19	15	12	13	7	19	7	20	10
ACCACACTCGAGCGGA	ref_317_missing	0	3	1	0	4	4	2	3	0	2
CACCGTTGTCCTTATG	ref_317_missing	19	46	27	25	56	12	41	14	53	25
GTTCCTACGTAAGCGT	ref_317_missing	11	25	15	15	26	13	23	11	29	8
GCTATCACTATCACTT	ref_317_missing	5	22	17	6	7	7	12	7	11	8
CTTTGAGACCCACGTT	alt_5906_new	14	11	4	14	17	6	15	4	23	7
ATTGTCGTTTAGCTCT	alt_5906_new	29	44	33	27	49	18	36	33	46	23
GTTAACTCACTTGTAT	alt_5906_new	3	8	5	6	5	8	10	5	13	5
TCTGATGACAAATGAT	alt_5906_new	6	18	4	0	17	3	16	4	25	6
GCTCGGGTTATTGATC	alt_5906_new	24	26	18	16	25	12	26	14	33	16
GGTCTTTGTCTGGAAT	alt_5906_new	19	35	11	19	26	13	28	9	31	13
GGTGTAGACCCCGTAA	alt_5906_new	20	48	25	25	47	20	48	14	38	24
TCGCGCACTATGACCC	alt_5906_new	11	18	13	7	21	17	23	11	29	18
CGCCTCCTAGCATATT	alt_5906_new	59	110	43	61	125	48	118	41	122	42
CAGGGGTCAGTGGAGG	alt_5906_new	23	42	34	10	41	8	57	19	39	25
TACGTTTCTTTGCCTG	alt_5906_new	62	142	85	55	122	63	175	54	160	54
TTGCACGGAAACCTGG	alt_5906_new	0	0	0	0	0	0	0	0	0	0
TTTAGCGCGATGTTAC	alt_5906_new	2	13	3	1	6	2	8	1	9	2
GTGTCATTGTGCGTTC	alt_5906_new	8	24	11	10	32	10	18	4	24	3
CTTCTGAGTCGGTGTT	alt_5906_new	1	6	4	6	4	6	9	5	3	5
CCGGCTTCGTTATCTT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
TCAACTTATTGGGCGA	alt_5906_new	14	21	13	7	32	4	13	10	18	8
GGCAACACCCTTGCAA	alt_5906_new	5	17	7	6	14	7	22	7	13	6
ACTGACGCCGGAGTGC	alt_5906_new	1	45	11	2	47	11	34	14	49	8
TTAGTCGAGGGCGGGT	alt_5906_new	11	27	8	13	19	13	36	9	33	11
AACTAAGGTCGTGACA	alt_5906_new	22	34	31	19	42	9	43	21	47	20
ACCGCGGCATCACCAC	alt_5906_new	1	7	1	0	5	0	5	2	3	1
CGATCGCCCACACAAG	alt_5906_new	6	16	8	16	19	15	23	16	36	12
ATCTTCTCACATTTTA	alt_5906_new	0	0	0	0	0	0	0	0	0	0
CTGTTTATACTCCCGC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
GTGAGCAGTTGTCCGC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
AAAGATTATAGTCTGG	alt_5906_new	5	13	7	4	6	2	9	6	13	2
TAATACGCATGAGTTT	alt_5906_new	39	88	61	48	105	36	112	44	90	35
TTCCGAGTAGGGGGGG	alt_5906_new	7	25	14	9	27	21	20	10	8	17
TTCCCATGGCGCGATA	alt_5906_new	23	25	22	17	35	16	31	20	46	22
GTGTATGATTTGGACA	alt_5906_new	3	4	2	1	5	2	4	1	5	1
AACCGATATCTAGGTG	alt_5906_new	2	9	1	0	6	4	12	2	6	3
TCCATCGTCGTGGAGC	alt_5906_new	6	8	5	5	5	3	13	2	10	2
CTAATACCAGAACCTC	alt_5906_new	42	134	73	60	126	52	128	44	163	50
ACATTCTCTCTAGTCG	alt_5906_new	8	31	14	11	24	11	15	5	23	5
CGCATACTGGCGGTGG	alt_5906_new	10	30	19	11	25	11	26	14	42	7
TGTCCCAAATAGGTCT	alt_5906_new	32	81	37	27	77	30	83	19	83	33
GTATATATGTTCTACT	alt_5906_new	13	20	15	6	17	11	13	4	25	9
TAGTTTAATCCATCTA	alt_5906_new	11	20	9	4	16	3	19	10	14	10
TTGTCTTCTGGAGTTT	alt_5906_new	2	2	1	1	3	1	2	0	4	0
TTGATATAGTCTCAGT	alt_5906_new	13	34	20	15	21	13	35	16	20	12
ACGAGCTCGAGTGCGT	alt_5906_new	6	20	18	11	18	3	16	13	28	9
GTCTATTGTCTCAGTT	alt_5906_new	33	90	47	40	92	44	84	28	98	36
TTCATGCTATTCTGAA	alt_5906_new	13	27	13	16	34	13	19	12	27	9
TTACTGCCCGGGGATA	alt_5906_new	0	0	0	0	0	0	0	0	0	0
GGATCTGACGGTATGG	alt_5906_new	0	0	0	0	0	0	0	0	0	0
TGTAGGGCAATAGCTG	alt_5906_new	2	6	5	5	6	4	8	2	4	9
AAGGCACTCGGTCGCC	alt_5906_new	36	73	30	28	52	24	76	30	54	34
GATTACACGTAGCCGA	alt_5906_new	5	10	1	6	5	2	11	3	7	4
CATATCACCAACCGTG	alt_5906_new	8	32	21	5	21	11	30	7	24	7
GTTCTTTGGCCCCGCA	alt_5906_new	21	29	18	24	30	24	30	11	50	9
GGTGCCTTTAGTAGCT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
ATAGCGCTAAATTCGT	alt_5906_new	9	4	11	0	14	3	6	5	10	4
GTGTTGTCGACCTTAT	alt_5906_new	25	34	29	13	36	21	40	16	36	10
CTGAAATGATCGCCTC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
CCAGATGAAACTGCCT	alt_5906_new	6	12	7	4	4	7	20	3	15	4
TAATTTGCAACTGAAT	alt_5906_new	8	24	12	11	17	9	10	11	12	7
GCACGGTTTTCCATTG	alt_5906_new	17	20	11	10	28	7	19	8	32	8
TTGCGCGCTCTAACTC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
ACTTATCCGTGTTGCT	alt_5906_new	10	12	12	8	27	12	22	7	25	12
GTCAGCTCGCGGCGGT	alt_5906_new	14	33	20	21	51	16	48	11	38	20
CTCGAATAAGTTAAAT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
TCTTGTAATGGCCGAG	alt_5906_new	0	0	0	0	0	0	0	0	0	0
GCGAATTCCATTAACA	alt_5906_new	18	54	26	34	35	22	44	7	57	16
ACGGAGGTTCAACAGC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
AAATTGTGTTTTGCAG	alt_5906_new	0	0	0	0	0	0	0	0	0	0
GGCGTTGCGGCGCATT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
TTGGGCTGCTAAGTGC	alt_5906_new	11	28	12	7	10	4	15	7	17	5
TACTCGGCGGCGAGGA	alt_5906_new	1	2	1	1	5	1	6	1	3	2
GTCTCGGCTTCTCGCC	alt_5906_new	17	29	10	4	31	7	24	11	30	10
AATCAACTAATCAAAT	alt_5906_new	10	33	10	19	33	13	37	21	49	13
TACCTGACCACCTCTT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
ACAAGTCGGTAATTGG	alt_5906_new	22	38	18	23	45	25	50	25	50	19
ACCCGTAGTTTCTTCG	alt_5906_new	17	37	16	16	36	27	43	14	52	17
TTTGAAACAATCCTAG	alt_5906_new	4	16	7	13	12	13	22	8	23	14
CTCGTGGAAAGGTGTG	alt_5906_new	0	0	0	0	0	0	0	0	0	0
ACATTTTAGTAAGTCC	alt_5906_new	20	31	16	10	29	17	39	13	37	15
AGTAGCAGCAGTCACC	alt_5906_new	10	32	10	18	20	14	26	12	27	10
GTACGATGTCTAGAAC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
ACAGTACATACTTATC	alt_5906_new	6	9	2	2	12	2	4	5	6	2
AAACCTATTTCACCTC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
CGCCCAGAATGGTGAC	alt_5906_new	4	10	14	6	19	4	9	7	16	2
CGCTATGACATAATAA	alt_5906_new	23	20	20	16	35	12	34	13	33	21
CCGGAAATGATGTCGG	alt_5906_new	26	47	30	31	48	23	56	15	63	20
CACCAGTTAATAGCGT	alt_5906_new	11	23	8	7	23	7	20	11	34	9
TATTCCCTTCTTCATT	alt_5906_new	12	32	16	7	17	19	30	12	21	15
TTCTCGCTCTTCTGTA	alt_5906_new	2	4	4	6	8	1	7	2	9	1
AGGTCCTCTGTTCTTA	alt_5906_new	9	27	19	10	29	13	32	16	32	10
AATGAATCCCTTTTTT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
CGGACAGTACGGCTGT	alt_5906_new	14	24	15	7	22	9	17	11	28	14
AGTCCGTTTAGGATTG	alt_5906_new	0	0	0	0	0	0	0	0	0	0
CTTCCTGTCAGCCGCC	alt_5906_new	12	23	23	14	38	11	43	18	24	20
CATTAGCTCTTCTATT	alt_5906_new	16	41	21	18	46	19	42	18	59	16
TCACTCAAGGGGTATT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
ATTCAGGTGTCGGACG	alt_5906_new	24	39	34	27	53	17	59	18	52	22
ACCTCCACCGAATTGT	alt_5906_new	0	0	0	0	0	0	0	0	0	0
CTTTCCTAGTCGTTTC	alt_5906_new	0	0	0	0	0	0	0	0	0	0
GATGTTTCTTGGTATC	alt_5906_new	0	1	4	2	4	0	4	2	1	0
ACGATTCTATTATGCA	alt_5906_new	0	0	0	0	0	0	0	0	0	0
TGCCTCGATGCTCCCA	alt_5906_new	0	8	4	7	5	6	4	6	7	2
ACCGTCAGTAGGTTAC	alt_5906_new	5	14	6	9	19	9	20	11	17	7
GCTTGGGGCAATCCGA	alt_5906_new	21	62	20	26	61	15	52	18	47	15
TAAGGCCGGTAGCCCT	alt_5906_new	8	18	14	13	23	5	22	10	13	8
TGGAGTTTCAGTCGGT	alt_5906_new	83	141	104	69	155	77	171	80	189	70
TCCGTACGCTTTTTGG	alt_5906_new	16	25	12	15	39	18	28	12	20	14
TAAAATGCGGCGTAAC	alt_4024_missing	8	17	14	3	19	4	20	12	18	5
TAATTAGGGACAGTCC	alt_4024_missing	11	20	9	9	18	11	16	6	16	12
ATTGTGTCTCCGACAA	alt_4024_missing	23	60	32	25	50	23	50	14	56	33
TGTCTGAGACTAGGTG	alt_4024_missing	5	13	0	3	5	2	16	2	5	1
AGCTGGTTTCACAGAT	alt_4024_missing	4	12	5	15	10	2	16	3	7	5
AGTTCTTCGGTCTCGT	alt_4024_missing	4	13	7	13	14	5	14	1	17	5
CTCGTTCGAAGCCGCA	alt_4024_missing	3	9	5	2	3	2	3	3	10	1
GTTGGTCCCCCCATGT	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
AATCTCCTGCCTGTTT	alt_4024_missing	32	58	30	43	48	39	46	30	50	30
TTAGAGGGTCTCGTTT	alt_4024_missing	18	42	26	28	47	21	47	32	51	25
TCCTTAACTGGGCCCC	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
TCGTCATTTAGATCCG	alt_4024_missing	2	9	4	7	16	5	5	5	16	6
ATAGTCCGCAAGAGCG	alt_4024_missing	10	13	16	11	28	14	21	15	49	7
CGTGATATGGTTGTAA	alt_4024_missing	3	2	3	0	3	2	1	5	2	3
TCCATCAAGCGTATTT	alt_4024_missing	43	76	57	43	76	43	80	43	84	32
TGTGGCCACGATAAAT	alt_4024_missing	19	35	23	16	42	12	44	7	54	25
ATTACATGTGTACTAA	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
TACCGGTCAGGTATAG	alt_4024_missing	3	7	12	9	16	10	19	4	17	2
AAGTTTCCAAGCTTGA	alt_4024_missing	0	1	1	0	1	0	3	1	0	0
GTTAGGCGACTACATG	alt_4024_missing	10	14	9	10	22	10	20	5	18	4
GTACGATACTTCCCTT	ref_4024_missing	80	166	73	60	181	78	192	53	212	65
TCTGAAGTTTCATTCG	alt_4024_missing	46	97	58	43	100	38	110	47	101	38
CCTGTGACTACACTGA	alt_4024_missing	33	76	30	17	65	20	68	17	74	24
CGGTCCGTGAATTGGG	alt_4024_missing	15	48	26	23	35	14	36	21	51	12
GAGTAAGGGGTAATCA	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
GCACCTAAGTCCTTAA	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
TAGTGAAGAGAGGCTG	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
GCGCCCATCATTCTGG	alt_4024_missing	8	14	4	4	21	9	19	5	16	5
TACGGATTCGGTTGAT	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
CGGTCTCTAAGGGGAT	alt_4024_missing	30	49	26	23	50	18	73	12	62	11
CTGTTCGTAAAACAAG	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
AGTACTCGGGCAGTAA	alt_4024_missing	6	12	14	6	14	4	12	7	13	3
GCATAATTGATTTTCC	alt_4024_missing	4	2	4	2	6	3	11	1	9	2
CGCCTGTTTCCCTTCA	alt_4024_missing	3	12	14	5	23	5	20	3	19	8
TAAGGGGTCTTGGCTA	alt_4024_missing	36	85	53	51	77	54	83	38	77	43
TATACGCATTCCATTA	alt_4024_missing	7	14	4	4	15	3	7	6	10	5
ACAGGCTTCCGTAGGG	alt_4024_missing	11	34	19	21	44	18	38	21	36	15
CTCGCAATCCGTAACC	alt_4024_missing	2	9	3	6	12	3	15	7	9	6
GTTATACTGATATGTG	alt_4024_missing	13	16	13	6	17	0	14	7	23	4
GGCCTTCGCATGGTGC	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
TAATGCGGCCCGATTG	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGAAGTATTTAT	alt_4024_missing	17	33	13	16	41	24	45	18	56	18
GGAGGCTGAAATTGCT	alt_4024_missing	0	0	0	0	0	0	0	0	0	0
TATATTCTTTGCAGAT	alt_4024_missing	21	32	35	18	38	19	47	15	41	27
CTTAGGTCCCGTCTTC	alt_4024_missing	11	7	9	8	16	6	12	3	15	1
TTCCGCCCACTCACAG	alt_4024_missing	5	4	0	4	5	2	5	4	1	1
GTTTCGTTCTGGTTGT	alt_4024_missing	3	7	1	4	7	2	2	9	4	0
TGATAATTTCAATAGG	ref_3855_missing	0	0	0	0	0	0	0	0	0	0
TACTGTCTTATGTTCG	ref_3855_missing	15	19	12	13	24	5	29	15	26	14
TATGTCATCGACTTTC	ref_3855_missing	0	2	0	2	0	1	0	1	2	1
GAACCCCTTTCCTTGC	ref_3855_missing	40	128	55	41	148	47	124	40	167	48
TAGGTTCTGGTCTTTG	ref_3855_missing	1	3	1	0	6	2	5	0	8	5
GGATTTAATACCGTGT	ref_3855_missing	9	14	13	22	15	7	10	8	18	8
CCTATCATTATTAGAG	ref_3855_missing	15	28	19	15	23	13	28	18	28	23
CAGGAGTCATCCATAG	ref_3855_missing	58	90	58	52	104	44	101	48	104	42
GACAGATGCGACTTCC	ref_3855_missing	5	15	10	16	21	11	23	10	30	17
TTCACGTCAATATAGA	ref_3855_missing	15	56	25	23	51	15	50	17	37	17
GGATTCAGGATGCCTA	ref_3855_missing	10	11	6	11	6	5	14	4	12	3
CGCTTTGATTTTCCTC	ref_3855_missing	1	1	2	0	1	0	1	1	1	1
ATGTGTGGCTTTGAAT	ref_3855_missing	0	0	0	0	0	0	0	0	0	0
TGCTCCCTGCGCATCA	ref_3855_missing	89	174	107	82	168	88	165	68	171	75
CGCGACTGTCGAAGTA	ref_3855_missing	3	15	14	13	16	11	19	9	24	11
TGTCTGTCCGCATTTG	ref_3855_missing	36	91	54	56	62	55	75	36	94	57
AGGCGGTGTACCTGCT	ref_3855_missing	20	33	23	14	23	16	31	15	46	14
AGTTTACTCGGGGATC	ref_3855_missing	28	61	54	38	64	35	64	31	69	39
TTGCTTATACGTATCT	ref_3855_missing	19	42	27	30	31	23	25	19	41	21
GTCATCGAGACTATCT	ref_3855_missing	0	0	0	0	0	0	0	0	0	0
GTCCACTTTTTTCTAC	ref_3855_missing	0	0	0	0	0	0	0	0	0	0
TGGGTCTAACCGCCGT	ref_3855_missing	0	0	0	0	0	0	0	0	0	0
ATCCCCGCGTCCTCAA	alt_5909_new	0	0	0	0	4	1	4	0	3	0
ACCGTACGACGATTTG	alt_5909_new	81	59	85	87	50	72	59	66	71	44
TCAACTTCCCGGTTAG	alt_5909_new	0	0	0	0	0	0	0	0	0	0
CGGCCGTGAAATATCC	alt_5909_new	53	42	70	61	58	70	52	73	52	53
TAATATAATTCCCGTA	alt_5909_new	0	5	3	3	0	3	2	1	8	2
GCTTGGGATATACTCA	alt_5909_new	59	46	73	66	50	67	42	69	47	45
GGACCTTTAAACCTGT	alt_5909_new	39	29	28	24	38	29	30	31	37	28
TTTGAGTGATGGTATT	alt_5909_new	42	37	50	48	30	25	43	49	42	41
TCTTTGCGGTATTGTC	alt_5909_new	49	47	57	55	56	64	56	55	45	57
TTAGTCAGTTTCTTAC	alt_5909_new	37	30	42	42	39	38	47	27	50	28
CCGTCCGTAGAGTTAT	alt_5909_new	0	0	0	0	0	0	0	0	0	0
AACCTATATCTCGCAC	alt_5909_new	0	0	0	0	0	0	0	0	0	0
CTCGTTTCACATAACA	alt_5909_new	97	71	105	75	74	82	85	82	85	79
TACAAGCATGGAACCC	alt_5909_new	336	319	386	348	306	314	383	310	353	287
CATGTTAACACCTTCC	alt_5909_new	16	22	27	16	12	24	18	23	19	15
AACGATCGATGTGTTG	alt_5909_new	8	10	7	2	6	5	11	6	14	3
TCTTACCCGCATTTCG	alt_5909_new	6	2	2	6	2	5	0	0	5	4
AATACGCAGGTCTATC	alt_5909_new	32	40	50	39	37	32	33	31	31	41
TGATGCGCATGTCCAT	alt_5909_new	11	14	7	13	12	20	26	16	10	14
ATCCTATATCTCGCAC	alt_5909_new	287	425	357	341	373	297	410	301	375	281
TTTTCTGATGACAAAG	alt_5909_new	32	28	32	37	19	36	31	32	27	32
TTTCGGTGCTACGGGT	ref_5909_new	108	74	122	117	105	93	104	115	94	100
AACAAGCATGGAACCC	alt_5909_new	0	0	0	0	0	0	0	0	0	0
AATTTGCGACTTCCTG	ref_5909_new	0	0	0	0	0	0	0	0	0	0
TAGATCGACGTCGCTC	alt_5909_new	20	13	21	16	13	12	13	14	22	13
CGTTGACTTCCTGGCG	alt_5909_new	0	0	0	0	0	0	0	0	0	0
AACTGTTATATGAATT	ref_4574_RC	3	4	2	3	0	4	2	4	1	3
TCGTAATTGGGGCGCG	ref_4574_RC	4	1	5	1	6	0	5	0	2	3
ATGGGCACCGATGTAA	ref_4574_RC	8	15	9	9	13	12	9	17	11	12
GTCGATTATTCTAAGG	ref_4574_RC	2	9	6	5	2	4	9	3	4	4
CGTGACTTTTCTGTCG	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
GGTTTATCTCTAAATG	ref_4574_RC	74	96	103	84	100	81	95	84	103	62
CCGTAGGCTAGGTCCG	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
GACATCGACAGTTAGA	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
ATCTTTTGCCTCTAGA	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
GCGTGCCCTCTTTAAC	ref_4574_RC	8	11	14	3	9	8	9	6	18	8
AGGAAACTGGGCTGTG	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
GCCAATTTTTTCCTTG	ref_4574_RC	16	21	14	14	29	16	31	6	14	19
TACAATCGCAAACTTA	ref_4574_RC	2	0	0	0	0	0	0	2	1	1
GGAGCTCATTTTTTCG	ref_4574_RC	11	7	7	10	3	9	3	5	5	5
AATTGTTTCAGTTTCT	ref_4574_RC	11	14	19	11	13	10	14	10	10	13
GTAATCACTTGGTACG	ref_4574_RC	1	3	0	2	4	1	8	0	0	0
TTGCAGCGAGATATCT	ref_4574_RC	14	9	15	10	19	4	16	7	11	8
ACTCGACCTCCGTAAC	ref_4574_RC	18	21	22	9	23	14	18	16	22	6
GGAAATTAAACCATCT	ref_4574_RC	25	32	39	21	41	29	57	26	32	30
TCGGGCTTGTACACGT	ref_4574_RC	23	24	31	30	28	21	23	31	47	29
TTGGTAGGCGACGCGT	ref_4574_RC	58	67	61	56	67	41	71	29	64	45
CGGTGTTGTGCGTTCG	ref_4574_RC	16	39	33	13	32	34	37	26	47	25
ACTTGGTTGCGGAAGG	ref_4574_RC	9	25	13	7	20	16	22	13	13	9
TGTATCGTCGATGCTG	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
AGTTCTACGTACATGT	ref_4574_RC	16	26	20	8	25	19	20	9	23	11
ACGTATTCGGTTACGA	ref_4574_RC	7	11	16	6	24	11	16	8	15	8
TCTATTATTAACGGGA	ref_4574_RC	3	14	5	6	10	5	5	5	9	5
ACACGCTCCGTTCGCG	ref_4574_RC	12	29	16	14	34	13	23	11	37	15
TAGACACGTCGTCTGT	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
TGTATCGTCGATGCCG	ref_4574_RC	103	110	102	95	122	95	118	94	98	80
ACCGTGCAGTTGGAAT	ref_4574_RC	8	9	13	9	14	5	10	12	20	11
GTTCACTTAAAGTATT	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
AACCGAAGCTGCTGAT	ref_4574_RC	6	4	11	10	10	11	8	6	5	6
CGTGGGCTACAACTAT	ref_4574_RC	18	24	16	27	32	21	22	17	28	13
GGCTTACTGGCTTATT	ref_4574_RC	9	10	13	12	11	9	17	5	14	9
CTATGTGGCCGGACGA	ref_4574_RC	0	0	0	0	0	0	0	0	0	0
TGTATCGGTTCGTATT	ref_4574_RC	80	96	92	75	105	75	104	76	104	59
TCTACTTTTGCAACTC	ref_4574_RC	24	29	28	16	34	24	29	23	25	14
GGATGTGGCTTAGGAG	alt_1105_fdr	32	25	46	44	25	35	20	37	17	48
CCGGCGTGACAGTCTA	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
CAGATGGTGATTTTAT	alt_1105_fdr	57	25	69	64	24	55	27	53	29	54
TGCTCATCCCTTAGTT	alt_1105_fdr	115	56	123	129	53	122	76	86	47	105
GTCGGGACTCTAGATC	alt_1105_fdr	48	14	44	39	17	42	16	40	17	34
TTCATAACTCTCGGAT	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
TCTATCGTACATCACG	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
ACAATCACCTTTTTCC	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
GGTCATATGTTCGTTT	alt_1105_fdr	43	10	52	50	14	47	20	38	24	40
GAAAGTGATAGGAAAA	alt_1105_fdr	41	24	47	38	36	32	11	28	39	27
ACTTGTATCAGAGTGG	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
GTTCTCTAATGGCTAG	alt_1105_fdr	59	33	77	57	40	66	41	61	42	57
CCTTGTCGCTTATGTG	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
GACGTCTACATATTTT	alt_1105_fdr	47	28	61	52	19	33	29	38	13	30
CGGACTACTAGGTAGT	alt_1105_fdr	67	42	87	63	43	74	31	74	35	65
TTTTAAAGGGAGATAG	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
GCAGACTTATTTCAAC	alt_1105_fdr	115	61	146	128	65	129	69	120	56	107
TTCCCGCCAAGCTGGT	alt_1105_fdr	11	6	13	10	3	16	3	13	14	18
TTTCTCTACTTTCTGC	alt_1105_fdr	79	49	104	73	53	99	46	96	52	72
AAGGTCTGTGACTTGT	alt_1105_fdr	2	0	5	7	0	3	4	4	0	4
TCGAGGCCCATTAAAT	alt_1105_fdr	50	26	58	59	29	73	29	50	25	53
TGCTTGGTACTTGAAC	alt_1105_fdr	24	12	24	18	9	28	9	17	14	15
CCCCACTGACTGTTAA	alt_1105_fdr	130	51	155	91	54	102	46	104	43	113
CAAGGTACCCATCGAC	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCCTTTTCGAGCT	alt_1105_fdr	4	3	7	1	1	7	3	8	3	4
TCCCTATGGCCCCCTC	alt_1105_fdr	133	43	133	108	41	88	60	106	53	140
ACTTCTACGTTGAGTC	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
AAGCGCCGGGCTATGT	alt_1105_fdr	38	22	48	41	15	35	12	29	24	40
GTTGTTTCGATCATAA	alt_1105_fdr	39	16	44	29	17	30	30	34	17	24
CATGTGGATTACGCCT	alt_1105_fdr	46	28	64	48	15	40	23	56	17	39
TCTTCTCGTGTATCCG	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTTCTATTAGATG	alt_1105_fdr	18	10	34	20	10	27	15	29	13	18
TTTTTCGCATTAATCT	alt_1105_fdr	48	16	56	43	21	53	22	43	24	47
GTTGTTCGCGTTCTCA	alt_1105_fdr	32	10	44	27	15	34	12	26	13	32
TGCTCTCCCCCAACAA	alt_1105_fdr	25	8	30	12	10	17	11	17	15	25
TATGCAGCGAATGTTG	alt_1105_fdr	27	7	36	32	13	30	10	20	14	26
AATAGCCTTAACCAGC	alt_1105_fdr	139	80	162	155	82	148	58	140	54	137
AAATTCCTTACTGGCT	alt_1105_fdr	815	319	992	834	364	799	353	761	375	766
TTGGAAGCCGTCTGGG	alt_1105_fdr	36	27	49	36	15	37	18	43	21	37
GGGCTGCAATTGGCTG	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
TGTGTACTGCTTACCT	alt_1105_fdr	8	28	19	5	20	9	36	14	34	13
GGAAGCACGAGATTGT	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
AGTCATGGTTTCCCCG	alt_1105_fdr	26	108	52	53	107	43	83	35	99	31
TTTATGGTTTGTTTAG	alt_1105_fdr	23	11	14	19	7	22	6	13	12	15
TGAGATCGGCTGCCAT	alt_1105_fdr	54	13	43	31	18	31	16	40	14	34
GATCATTACGGTTGCT	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
CGTCATCGCTCAAGTA	alt_1105_fdr	34	20	66	48	20	39	23	35	21	40
GTTTAATTGAGCATGT	alt_1105_fdr	45	28	66	51	27	44	21	54	15	48
TGAATAATAAATTGTC	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCGGGAGCCAAAA	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCATAAACTGCGT	alt_1105_fdr	16	27	49	22	11	27	17	27	11	23
TTAGTTGGGTAACATC	alt_1105_fdr	114	40	120	126	35	95	38	74	50	79
CCCATACTTAACGTTG	alt_1105_fdr	43	19	63	47	24	37	20	43	18	39
TCGTGTGCACTTGTAT	alt_1105_fdr	77	31	101	94	40	91	40	68	25	70
GTTGTCACGGATGCAT	alt_1105_fdr	11	7	15	16	5	14	6	10	5	17
AACTGCACGGACTAAA	alt_1105_fdr	38	20	63	48	18	38	8	35	16	31
AGAGATGGTAGCCGCT	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
CGTGGGGTTATTGTAT	alt_1105_fdr	41	24	60	54	31	38	31	48	33	31
GCTCGAATTAACCGCG	alt_1105_fdr	97	30	93	81	32	72	30	66	27	85
TGCCACTCTTATTCTC	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
CGCATTGGTTATTTTT	alt_1105_fdr	43	12	51	44	26	41	19	47	29	35
TGTAAGTGAATATATG	alt_1105_fdr	72	42	79	51	49	69	29	66	31	61
CTGTAGAGCCGCCCAA	alt_1105_fdr	16	13	21	21	8	20	9	23	11	9
GTTAGGCCGTGGGTGT	alt_1105_fdr	15	6	18	14	7	11	4	15	7	12
AATTGTGCAGGGGAAT	alt_1105_fdr	18	18	35	17	3	18	11	11	8	16
GGTGCTTGCCCAACTC	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
GATAGTTGTCTAATCG	alt_1105_fdr	44	21	60	57	30	39	35	51	21	53
GCTTAGTGGCCAGTGT	alt_1105_fdr	334	125	380	346	156	305	172	332	170	288
CCCATCCGTCTTTCCT	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
TAATGGGATACAGTGC	alt_1105_fdr	102	29	99	87	38	82	38	91	44	83
CGTCTCGGCAATTAGG	alt_1105_fdr	28	8	43	28	11	20	8	29	8	18
AGATACGGCTTTGGAT	alt_1105_fdr	76	25	83	56	31	65	22	66	26	78
CGATCCGACTTTAGTC	alt_1105_fdr	6	15	16	10	13	10	11	8	11	13
ACCGGCTGTCCTTGTT	alt_1105_fdr	130	70	141	122	75	114	50	125	53	114
AGCATAATACGGTCCG	alt_1105_fdr	36	21	41	52	17	40	22	33	21	34
TCGCTTTCTGGAGCCG	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
AGGAGCTAGGTCGTCC	alt_1105_fdr	50	25	77	65	40	55	29	60	15	51
GGTTTCGCTGTGGGAG	alt_1105_fdr	65	21	83	76	27	39	27	47	32	73
TTCGACTCTCATTGGT	alt_1105_fdr	192	90	226	237	124	203	113	192	121	157
CCGTGTTCTATTCGTC	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
ACTATTTATTGACGAG	alt_1105_fdr	235	96	249	232	86	201	109	200	104	207
CTGATAGGGACGGGCT	alt_1105_fdr	0	0	0	0	0	0	0	0	0	0
CGGTCAACATTACCTC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TGTGGCTTAATTCGCT	ref_2579_negative	40	47	54	50	51	50	66	50	68	32
TGAAATACCCAGGCGC	ref_2579_negative	21	24	19	17	17	13	14	15	20	19
TTGTCTGATAATGGTT	ref_2579_negative	7	21	23	15	18	17	8	15	15	13
TCATTCGATACCATCG	ref_2579_negative	43	47	50	48	46	42	49	36	67	31
ACCGCAATTGAGGAGC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
ACAAGTAGAAAGTGTT	ref_2579_negative	11	11	17	12	7	11	10	3	3	5
GATTCAACCCGTTCCT	ref_2579_negative	97	104	101	85	145	96	97	75	115	82
CCAATGTCACATTCTT	ref_2579_negative	40	47	53	39	38	31	31	33	39	29
CGCCCGCGGAGTTCTC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
GCATTTACTCATTTGT	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
ACTCTATCACTGATCT	ref_2579_negative	25	29	21	28	22	18	31	28	31	12
CGTATTGTTTGTTTAG	ref_2579_negative	15	19	19	13	14	10	14	18	20	22
CAGGTCGGCGAGCATG	ref_2579_negative	50	54	65	85	46	55	66	66	72	56
CCCCAGTTCAAGCTCT	ref_2579_negative	23	18	18	27	20	23	28	16	20	23
TGGTTCTGCGCCGTTA	ref_2579_negative	13	21	25	17	32	12	25	18	13	13
ATCGTTATCTTCTCTG	ref_2579_negative	114	127	143	108	132	100	115	112	114	108
TTAAGTATTTGTCGTC	ref_2579_negative	21	15	26	22	22	15	20	13	14	12
GCGATCCATTTAGGTC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
GTCTTTATCGGGATTG	ref_2579_negative	0	4	4	2	3	1	2	3	0	0
TGCCGCCCCTGTAAGA	ref_2579_negative	5	7	2	1	3	3	9	4	6	5
TTTAGGCTCACGACCG	ref_2579_negative	3	6	4	5	7	4	7	4	9	3
CGCACTGGCATTCATA	ref_2579_negative	40	50	38	26	41	37	42	25	44	29
TATCGCATTTTTATTT	ref_2579_negative	29	39	29	22	26	16	27	16	31	31
CCGCCTGTATTTGGTG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
CTTCTCGCTACGGAAA	ref_2579_negative	53	60	52	42	73	37	61	29	50	49
TCCACAATTACACCAA	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
ACGTGCCGCTTACATG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
CAATAGTTCTCCGTTT	ref_2579_negative	24	28	39	30	42	31	35	33	33	23
GGTTCCCTGCCGTACT	ref_2579_negative	9	8	12	8	6	4	15	8	11	8
TTATTCCTTCGATTAG	ref_2579_negative	39	44	62	49	53	46	59	49	47	37
CCCCCGGGCCACCCGG	ref_2579_negative	19	20	16	22	17	24	36	12	16	22
CTCGAATTATTCGTCC	ref_2579_negative	27	39	26	31	27	27	30	20	14	21
GTACGTGGCGAGAAAG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TAGTTCACGTTTTCCT	ref_2579_negative	10	9	7	8	15	7	6	8	10	5
TCCTTTTCCCATGGAG	ref_2579_negative	21	15	30	25	13	12	17	14	20	10
TTACCTTTATCGCGAT	ref_2579_negative	5	6	5	6	9	8	12	6	8	9
TTAGGGACTGAAGTTG	ref_2579_negative	33	65	48	54	40	46	52	42	58	39
TGACTCAGTAGAGACG	ref_2579_negative	5	10	9	14	9	13	5	11	7	3
CGCAATCGTGCCGGGC	ref_2579_negative	10	18	15	19	10	17	13	14	7	10
CGGAGTGCGCTCTTTA	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
GAGATTTGTTAAACCC	ref_2579_negative	19	25	32	27	25	20	22	22	38	13
TTAGGCTTGTTTATGC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TTCAGCATAATCCGGT	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
CGTGGATGTCACTAGA	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
CTCTGCGTCACAAGTT	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
CTGTAACCCCCAGGTA	ref_2579_negative	46	39	37	33	51	38	61	41	32	39
CAATTCTTGTATTTAT	ref_2579_negative	7	10	10	6	8	6	5	5	9	11
GTCCCATCGCTCGCCG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
AAATACCCCGGTCCCG	ref_2579_negative	18	35	22	23	30	17	22	23	21	13
CGCTTACCGGGATGGT	ref_2579_negative	10	21	23	11	26	7	20	7	20	8
CTTATGATTGTTGGGA	ref_2579_negative	27	43	43	37	37	25	31	27	32	32
AGAGTTAAGGCAATGG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TGTTGGAAAGATCTAG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TCGATGTTGGTCGCTC	ref_2579_negative	26	38	34	25	53	29	43	24	38	22
GGTGTCGTTGTTTAAC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
AGCACCCAATTAATCC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TGATATACTTGAGATA	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TGCGTCAAACCCATAG	ref_2579_negative	27	24	25	25	37	23	36	25	37	26
TATACTACCCACGGCA	ref_2579_negative	33	37	41	35	35	28	50	27	28	38
ACGGCCTCTACCCCAC	ref_2579_negative	82	98	115	90	129	93	105	76	124	97
GACAGTCTCCTCTTTT	ref_2579_negative	56	53	56	51	72	39	62	38	49	46
ATTTGTCGGTCTTGAA	ref_2579_negative	18	21	20	22	23	20	24	12	24	15
GGCCGCCGCGCGCTTC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TTGTCTGGCTACTTCG	ref_2579_negative	72	81	73	60	76	58	67	61	78	51
TTCGTGTCTTCTAACC	ref_2579_negative	22	22	32	23	27	22	29	22	34	14
ACTTCTAACGGCATTC	ref_2579_negative	7	10	16	10	17	4	13	6	14	6
ATGCCTTACGACAATT	ref_2579_negative	41	60	55	35	65	41	48	45	69	49
TTGAACTGTCCTCGAA	ref_2579_negative	11	23	16	18	15	13	24	17	27	17
CTAATTCGGTCGTAAC	ref_2579_negative	35	35	41	22	32	29	24	30	38	19
TCGAACAGTCTGGAAC	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
ATGCATTTCGTATACA	ref_2579_negative	24	21	39	31	27	19	38	32	29	13
CCTCCAGAATGATTCC	ref_2579_negative	29	20	32	18	22	26	25	24	27	26
CATATGTTTCAATTTA	ref_2579_negative	30	36	28	25	24	30	28	17	21	22
CGGACGGTGTATCTAT	ref_2579_negative	58	67	67	56	74	57	79	49	92	58
TATGAAAGGTCTCTTT	ref_2579_negative	63	56	44	46	54	35	74	44	39	38
CTCCCAACATCCGGCC	ref_2579_negative	90	115	125	95	103	95	131	76	107	87
GTGACATCGAAAGTCT	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
GGCAACTCACATATCA	ref_2579_negative	7	4	5	11	4	2	3	6	1	4
GCCGTATAAAGGTAAA	ref_2579_negative	0	1	3	0	0	0	0	1	0	0
AGAATGCGGGTTCGCT	ref_2579_negative	58	65	84	77	67	65	83	47	59	58
GGCCTACGTCGATCTT	ref_2579_negative	26	29	33	29	28	27	31	17	24	27
CTTCCTGACAGTGTTC	ref_2579_negative	2	1	4	3	3	4	5	2	7	6
CTCTTGGCGTCTCATT	ref_2579_negative	27	46	39	25	26	22	40	36	40	43
CACCTTAGCAGCTCTG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
TACATTCCCTGGTGCC	ref_2579_negative	10	47	9	8	45	9	25	5	40	10
GATTCTTCCAACGATA	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
ACGCAGGAGCTCTCCA	ref_2579_negative	64	80	86	84	90	76	88	73	84	59
TACCCTCCTACTTATG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
CTTCTTAGTCCGTACG	ref_2579_negative	0	0	0	0	0	0	0	0	0	0
CACGATGCCCCCTAGC	ref_2579_negative	5	10	6	5	12	11	12	9	4	7
AAGTTTCGCCAGTTTA	ref_2579_negative	64	61	55	46	60	51	76	45	84	59
AGAGCATTCCTATCGT	ref_2579_negative	20	31	30	17	26	26	18	23	21	13
ATAACCTCTCGGCCCG	ref_2579_negative	11	14	18	10	15	18	20	10	23	14
AGGCTTCCTTGTGGTT	ref_2579_negative	16	14	20	7	22	8	12	15	27	11
CGTGTGCTGATTCTCT	ref_2579_negative	19	25	17	22	8	22	29	13	27	11
AAAACGGGCCTATGGC	ref_2579_negative	46	60	66	58	75	58	69	45	65	31
TTTAGAATAGATGAAT	ref_5163_upstream	3	4	4	6	9	4	6	6	2	1
TTACTGTTTTTCAGCT	ref_5163_upstream	7	12	10	9	10	3	16	6	18	12
TCATCCTGTTAATATC	ref_5163_upstream	35	82	50	41	62	41	74	24	109	48
GGTTGATCGGCAATGT	ref_5163_upstream	35	47	40	18	63	20	44	35	56	28
GTGATTGTGACCGCTC	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCATGATCGTTTTTGC	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
ACACCGGAGGATTGAG	ref_5163_upstream	7	18	7	7	23	9	17	12	25	7
CTCTTCCACAGCGAAC	ref_5163_upstream	41	77	35	28	70	33	57	34	83	26
GTACTGAGATAAAGAG	ref_5163_upstream	19	42	31	21	32	11	46	13	46	19
CGGCCGCTATGATCCA	ref_5163_upstream	11	46	7	11	37	4	59	2	42	8
CCCCTTGCGGATATCG	ref_5163_upstream	3	14	7	3	9	2	13	7	14	0
CGGCTAGGCTGGTTAG	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
GGAGGACCTGGCAACT	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
GCACGCTTTTTTACAT	ref_5163_upstream	9	18	10	12	23	12	21	12	21	7
CGCCTGAGATGTACAC	ref_5163_upstream	26	52	35	29	46	33	68	27	70	30
GTATGATTTCATTTGT	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCCGATAAGAAG	ref_5163_upstream	3	4	2	1	11	4	10	4	8	2
GCTTTGATTTGGGGGT	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCTATCTTTCACCTGA	ref_5163_upstream	32	40	25	32	48	33	85	24	60	19
ACCTTAAAATTGACAC	ref_5163_upstream	0	10	3	3	5	4	5	5	7	3
CCGAAGTCACCGGGCC	ref_5163_upstream	7	29	17	9	38	13	31	11	35	10
GGGTCCGGCATCTTGT	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGTGCCTAATGGA	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
GTAATAGTCCGGACCC	ref_5163_upstream	49	69	63	58	77	49	93	62	94	50
CAGATCGTAGCCGAAG	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TCTAGCAGCATAGCCG	ref_5163_upstream	2	6	0	4	5	5	5	4	8	2
AGCCGATAGTGTTACA	ref_5163_upstream	54	186	64	67	197	47	201	41	187	52
CGTGTTTTTCTTTAGC	ref_5163_upstream	51	126	52	44	138	55	145	53	144	48
TACGTTAGACGCGGCA	ref_5163_upstream	8	9	4	6	11	10	10	3	18	10
CTTCTTCGTCCTATGG	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAGACAACTGCTC	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
CTTCGAACATTTATAA	ref_5163_upstream	30	66	39	21	66	22	66	31	73	42
AGTTGGCTATCTGCGG	ref_5163_upstream	10	15	19	12	12	9	27	5	20	6
TCTGCTGGTTAATGGG	ref_5163_upstream	9	12	8	10	14	7	12	6	15	5
TGGCATACAACGGGCA	ref_5163_upstream	21	48	20	11	51	23	50	15	34	10
ACCTGATTTCGGGGCT	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGACTGGTAGTCG	ref_5163_upstream	1	18	4	9	18	2	22	5	18	3
TCATTTCAACGTTCGT	ref_5163_upstream	8	33	14	19	20	12	38	11	16	15
CTAGCCACGAGCCTGT	ref_5163_upstream	11	46	13	12	37	15	40	14	40	12
CCATCGTCTGGGTGTG	ref_5163_upstream	0	3	0	1	4	1	2	0	0	0
GAGGACAGTGAAGTCT	ref_5163_upstream	44	105	72	55	98	45	108	43	106	48
GGTATTTGTGCCCCTT	ref_5163_upstream	90	130	94	58	149	82	123	80	137	78
AGGGACTCATCCTTTG	ref_5163_upstream	42	70	51	49	90	51	77	37	88	38
GTCAGGATGGTCCCAA	ref_5163_upstream	3	14	3	5	10	0	14	0	16	1
TTGATACAGCGCTAGC	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
AGTTGTCGTTTATCAT	ref_5163_upstream	11	12	6	4	12	7	8	5	20	7
CTGGTTAAAAACAGAG	ref_5163_upstream	39	70	50	51	67	37	69	29	72	36
TTTAACTATTTTCGCT	ref_5163_upstream	6	15	12	7	22	13	12	8	10	9
GTCGAGAGCCGATACT	ref_5163_upstream	59	90	68	55	67	52	96	53	100	49
ACGAAGCCTACTCCAT	ref_5163_upstream	1	1	1	0	4	1	6	1	3	1
AAGGTCCACGCACTGG	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TTGCCACATTGGAGCG	ref_5163_upstream	10	16	16	9	17	13	32	5	24	14
CAGTCCGATTGCTAGT	ref_5163_upstream	0	0	0	1	2	2	2	0	5	1
GTATGAGTGAGCTTGA	ref_5163_upstream	35	53	50	32	76	25	75	35	47	42
CATGTGTATAACGTTG	ref_5163_upstream	12	20	14	18	12	10	19	7	26	12
AGCCACCGCATAATGC	ref_5163_upstream	17	57	25	28	65	22	64	18	68	11
CTTACCTACGACGTCC	ref_5163_upstream	51	161	55	43	218	51	164	30	168	41
GTCCCGTGAAGAGCGG	ref_5163_upstream	20	36	24	16	24	15	38	27	54	25
GTCTTGCGGGGGGCCA	ref_5163_upstream	3	4	7	5	10	2	11	8	5	2
CGTCTGCCCAAAAATA	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTGCTCTGTTCGG	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
TGCTATAAAGCTGGTG	ref_5163_upstream	0	0	0	0	0	0	0	0	0	0
GATGGGTTCGTTTCGC	ref_5633_new	48	43	36	32	40	42	49	36	50	31
GAAACGCCGCGCCTGT	ref_5633_new	57	70	85	57	51	37	67	52	66	50
CGTGCTTGGGTTGTAC	ref_5633_new	62	69	96	72	102	66	131	62	106	62
GTCCGGGCGATGCTCT	ref_5633_new	40	46	36	30	33	39	29	37	41	36
TAGGGCAACCCTAGCC	ref_5633_new	0	0	0	0	0	0	0	0	0	0
TGGGGGTTATCTCCCC	ref_5633_new	54	40	54	65	38	39	58	39	70	33
GTTGCCAACGAAATGC	ref_5633_new	41	41	42	28	39	37	39	36	55	36
TCAAATGCGTCCGAAT	ref_5633_new	8	7	12	9	8	8	7	7	2	6
ACTATGGCAAAGTGTT	ref_5633_new	0	0	0	0	0	0	0	0	0	0
CATTTTGGTAACAGGT	ref_5633_new	103	87	119	92	105	89	111	75	101	96
TTTTTCGTTAGCCATT	ref_5633_new	0	3	4	2	0	1	4	1	1	3
ATATTACTTTATATGC	ref_5633_new	8	1	3	3	9	2	2	2	6	4
TTCATAGCCATACCGC	ref_5633_new	19	23	15	6	20	12	12	8	19	11
TGCCGTGCCTGAGATA	ref_5633_new	7	7	7	10	8	7	10	5	11	10
AAGATGCTTAGCTCGA	ref_5633_new	16	10	22	13	18	13	27	18	23	13
GGGGGCGTCCGAATCA	ref_5633_new	50	70	68	74	73	59	57	63	72	74
CTCCCTTGCCACGTGT	ref_5633_new	0	0	0	0	0	0	0	0	0	0
CTCTGTTGAATGGAGG	ref_5633_new	72	78	72	73	73	64	77	51	68	58
AAACTGTAGATCACAA	ref_5633_new	0	0	0	0	0	0	0	0	0	0
CTTCAGTATGAGCGGG	ref_5633_new	12	8	16	5	11	13	9	10	9	3
ATGCCATGTGCCTTCT	ref_5633_new	42	32	56	51	40	36	36	38	33	47
GTGGCATCGGGTAAGA	ref_5633_new	56	71	67	61	56	56	59	54	50	43
TTATCTGGTTTGCTCC	ref_5633_new	24	29	35	25	20	26	30	24	25	14
AACCCTTTGCCCTCAG	ref_5633_new	11	12	8	10	13	10	8	5	10	8
TCGGCACTGCTATCTC	ref_5633_new	13	21	22	15	18	13	19	18	20	14
TACCAGCATTACTATG	ref_5633_new	36	49	54	52	40	49	51	42	60	30
TCGCTGTCTCTATTTC	ref_5633_new	13	17	13	13	15	8	15	10	16	8
ATGTTTACATTGTCCA	ref_5633_new	20	42	24	37	46	21	32	24	26	22
TCCTAGATGTTGGTCA	ref_5633_new	36	57	46	29	65	20	47	31	60	21
AACCACTCCGGGCTTA	ref_5633_new	8	10	5	7	10	9	17	17	9	7
TAGGTAAGACGGTGTT	ref_5633_new	8	32	12	14	21	15	14	10	18	12
ACTTAGCACCTTACGT	ref_5633_new	24	37	26	18	39	26	37	21	41	23
TTGACCCATATATCTC	ref_5633_new	34	35	37	36	31	34	38	27	39	21
GGTGTGGACCTTGTCG	ref_5633_new	94	103	135	104	135	96	145	119	143	101
CGTGTAAAAGAAGCTT	ref_5633_new	0	0	0	0	0	0	0	0	0	0
ATCCTATGTAGTCAGG	ref_5633_new	1	3	3	9	3	7	4	3	5	1
AAAACAATTTGCGACG	ref_5633_new	27	52	64	43	59	44	68	39	36	41
AACGTTTCTGCGTTCG	ref_5633_new	18	34	27	21	34	17	30	25	35	32
GCGTGACCTTTTTTGG	ref_5633_new	0	0	0	0	0	0	0	0	0	0
GATTAGTTTCTAGCTG	ref_5633_new	9	8	10	13	16	7	8	9	8	7
TGATTCCTCTCTGCAC	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
AAGGTCCCAGAACATC	alt_3566_missing	53	134	66	47	140	37	135	48	149	40
TGCTCAGGGTTGATGT	alt_3566_missing	5	27	26	15	39	12	35	21	46	5
CCTTCGTAGGGCCTGC	alt_3566_missing	82	209	88	70	205	78	246	71	231	79
CTGCACGGCGTTGAGG	alt_3566_missing	1	8	9	3	17	7	24	6	12	6
AGACGTAAAATGTTCT	alt_3566_missing	31	94	35	36	46	42	90	22	85	25
TCCTGTTAGTTTCTAC	alt_3566_missing	23	69	29	25	80	29	82	19	73	22
ACGATGCCGTGCCAGG	alt_3566_missing	57	126	61	61	115	69	136	52	150	50
TGGGTGAAATCAGTTG	alt_3566_missing	45	88	68	43	95	50	130	36	117	43
TGTTAGCGGTACCTCT	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
ACTTTGTGCCATGGTG	alt_3566_missing	0	2	2	2	3	3	4	2	4	2
AAGATTTTTCATGGGT	alt_3566_missing	1	7	3	6	8	8	2	2	9	5
GCCGAGGGAGATATAA	alt_3566_missing	5	5	3	0	3	5	5	3	7	4
AGGCTTGGGCAACTGA	alt_3566_missing	17	49	29	13	39	23	48	23	31	22
GACGCTTCGGCCGCAA	alt_3566_missing	5	32	8	8	31	4	24	2	26	2
TCTTCAGAACATAAAG	alt_3566_missing	132	261	161	131	272	138	242	127	273	148
CTTGACCTGTCTGTAG	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
TTCACGTTTTTGTGCT	alt_3566_missing	208	393	227	148	349	169	393	145	403	144
GAGATTTATACTATAT	alt_3566_missing	21	44	21	14	41	15	47	15	50	27
GAGATACGGTCTAGCC	alt_3566_missing	37	89	55	45	80	42	88	43	87	42
CTTTAGTTTTCGCTGA	alt_3566_missing	0	7	6	3	4	4	9	2	8	1
AAGTTCGTACTCTGTG	alt_3566_missing	16	36	26	21	34	19	52	17	38	28
GAGTTACTATGCTCCT	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
GTTGGTAACTGACGGA	alt_3566_missing	20	26	18	11	17	13	16	9	24	10
TCCACCAGGTCCATAT	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
TTATATGGGGTAATGC	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
TACAGATGGTGCGTTA	alt_3566_missing	37	96	60	42	134	36	140	52	138	44
AGCCGCCCTAGGGTTT	alt_3566_missing	19	38	19	7	39	15	29	16	32	13
AGCCTCGTAGTCTCGA	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
TGATCAGCGATGGGCC	alt_3566_missing	5	13	6	5	11	9	8	2	17	8
AGGTATTTCTGGGATT	alt_3566_missing	35	54	26	28	40	15	64	22	58	25
TTTAGTCATAAGCCGG	alt_3566_missing	3	11	10	7	12	3	8	5	10	3
AGTGACCTAATCTTGG	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGCGATGCGGTT	alt_3566_missing	6	20	7	5	11	8	22	4	14	8
CGACTATGGATCCTCG	alt_3566_missing	6	17	23	17	22	9	13	4	27	6
CAAACGCTTTTTGAAG	alt_3566_missing	5	4	3	1	2	3	8	11	8	1
TCATGCATGAAAGTGT	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
TCGTTTTGATAGATCT	alt_3566_missing	5	13	8	8	5	11	11	1	15	5
AGTTTCAATTTGTTTC	alt_3566_missing	0	0	0	0	0	0	0	0	0	0
GTTGTATAGTGAAGCT	alt_3566_missing	50	104	61	28	114	59	116	40	96	42
TGTTACAATACTATTG	alt_3566_missing	4	4	4	6	11	5	6	2	4	6
TGCAATTCAATGGGGC	alt_3566_missing	37	75	42	32	45	41	75	33	60	45
TTGTATATTTATTGGA	alt_3566_missing	14	38	16	9	46	11	34	15	40	9
GGGCAGTTAGTTTTCT	alt_5240_upstream	87	44	96	72	42	75	34	66	43	88
ATTTAATCCTCTTCCT	alt_5240_upstream	60	27	50	67	32	45	30	45	36	55
GTGTGGCCTAATTCGC	alt_5240_upstream	84	58	105	87	46	86	77	83	73	82
TGTATTCGTGTCCGGT	alt_5240_upstream	59	37	64	60	54	63	41	44	60	49
CTTGCCTCACGTCCCT	alt_5240_upstream	50	42	57	57	49	59	23	49	38	47
CAATCATCCGATAATG	alt_5240_upstream	21	10	24	19	11	11	12	17	7	6
GCTAGCAAGACTTATC	alt_5240_upstream	88	52	88	92	49	93	56	74	59	76
GAGATTGTGTCTGAGC	alt_5240_upstream	615	362	742	652	425	544	413	611	456	615
AGCTCCCACCCAAGCT	alt_5240_upstream	31	22	38	37	15	29	19	30	23	32
TATCCGCCATAACGTT	alt_5240_upstream	162	96	192	173	85	176	85	160	100	153
GCGTCGTTTGTCTCAT	alt_5240_upstream	51	44	62	64	31	46	39	52	50	42
GTGGTTGCATTTTTTT	alt_5240_upstream	41	21	50	52	34	34	28	33	27	36
CGTGTCCCAATCGGAG	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCTTTACAGTATC	alt_5240_upstream	212	147	257	263	173	212	143	171	173	199
TGATTATACTGTGTGG	alt_5240_upstream	104	82	133	121	60	118	84	81	95	144
GTGTTATTGATTCAAC	alt_5240_upstream	4	11	7	8	8	13	8	5	8	7
AATTCCACTTCTTGCA	alt_5240_upstream	50	33	43	45	32	35	35	34	49	37
CCTTGTCATCCTAGGC	alt_5240_upstream	99	62	107	118	53	77	67	108	68	72
TCTTATGGTACTAAGG	alt_5240_upstream	65	59	76	67	45	63	35	59	42	74
TATAGGTTGATCCGCA	alt_5240_upstream	86	53	113	114	36	82	52	66	50	81
AAACTGGGCGCGCCAC	alt_5240_upstream	15	12	25	13	11	12	12	17	12	12
ACATAATTGGAAAGTG	alt_5240_upstream	111	78	139	127	68	118	60	95	84	101
ATTAAGAAAAAGATCG	alt_5240_upstream	56	23	53	44	33	52	21	43	40	40
ATTGTCGTCGCACTCG	alt_5240_upstream	341	179	409	371	165	322	218	303	192	320
CGCTTTTAAACCTTAG	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTCCTTAGGTCGA	alt_5240_upstream	29	40	32	38	43	40	26	29	28	35
CATATTCTTTGGACGT	alt_5240_upstream	110	66	114	115	73	101	78	84	67	117
CCTGCTAGCACGGTTA	alt_5240_upstream	36	13	38	27	20	27	13	39	24	19
TCTCCTTAGTGAGACA	alt_5240_upstream	48	31	43	52	47	51	29	36	29	37
CTGCGATACCGTGACT	alt_5240_upstream	41	28	46	40	48	45	39	43	42	30
GTCATATAGTACAGCA	alt_5240_upstream	10	5	10	8	5	7	3	4	5	4
ATGTCTGAGTGTTTGT	alt_5240_upstream	46	36	36	45	33	34	24	30	33	29
GCCCAGTGCAGTTACA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CAATCATCTCCCGGTT	alt_5240_upstream	46	24	35	39	15	33	16	41	14	36
TAGGCATCAAAAGCCA	alt_5240_upstream	34	26	33	33	14	26	12	15	22	25
TTTGTGTCGCTTACCC	alt_5240_upstream	30	17	35	24	16	26	25	11	19	23
TATGAGAGGCCTAGCC	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CTCCACTGGGCGCGTG	alt_5240_upstream	83	95	96	80	80	66	84	71	82	65
CGCCGTAGAGATTGTA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TAATCTTAGAGCGGTT	alt_5240_upstream	3	2	4	5	6	2	3	1	2	4
GCTTCGCATCTTTTGT	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
ATCATGAGATGGTATT	alt_5240_upstream	55	50	69	50	46	51	33	57	45	52
TTAAAGTAGTGGTCTA	alt_5240_upstream	35	24	34	39	20	27	19	27	20	28
GAACTAGATAGTCTCA	alt_5240_upstream	6	8	8	9	2	3	9	10	5	4
ATCTCCCGCGATAGTC	alt_5240_upstream	39	54	53	41	55	48	56	30	53	30
ATCATCATATGTGGTG	alt_5240_upstream	79	40	54	73	44	52	54	73	56	49
TGGGTTCAAATCCCTT	alt_5240_upstream	266	201	324	294	184	284	210	265	188	274
ACCTAGGTATCTCTCA	alt_5240_upstream	41	35	43	28	32	27	36	27	28	25
CGCTTAGGTTTTGTAA	alt_5240_upstream	55	31	49	48	40	48	36	58	40	37
CAGCCTTGCTTGCCCA	alt_5240_upstream	18	26	24	26	33	14	33	24	45	18
GCGGTTTAATAATTTG	alt_5240_upstream	124	77	170	139	81	119	103	107	80	120
GTTATGACAAGGGGAA	alt_5240_upstream	125	74	175	125	58	142	84	135	95	109
GGACTTTCGCTCTTTT	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGAGCATTTGGAT	alt_5240_upstream	330	229	368	347	181	290	241	327	265	314
GACTCCATTGTATTAC	alt_5240_upstream	49	31	63	57	35	51	40	48	29	38
GTTACGTAATTCGTAT	alt_5240_upstream	46	42	58	71	43	60	25	52	31	51
CAATGGGCATACTAAG	alt_5240_upstream	142	66	170	138	90	116	110	124	80	118
TTAGCTGTACTCAGTC	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGCATTAGGTTAT	alt_5240_upstream	72	35	84	51	53	55	51	48	38	59
CCCTTCCACCGGTGGT	alt_5240_upstream	12	11	7	12	6	13	7	10	10	7
CCCTCTCCTCTTCGGA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CGCGCTGCTTGTGAGT	alt_5240_upstream	133	90	152	141	110	130	109	139	101	117
ATAGTCTTACCAACGT	alt_5240_upstream	15	20	16	22	18	22	13	11	8	19
ACGGCGCCGGTCCTGC	alt_5240_upstream	76	42	81	86	51	69	45	61	47	60
CCCAAGGACATGTTAT	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CATTATTGGGGACGTG	alt_5240_upstream	73	46	85	82	36	53	35	59	44	50
GCAGAGGTCGACTGGA	alt_5240_upstream	5	19	7	4	15	2	19	6	15	2
TTCGCTTACCCCTTAC	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CTAAAGTCATGTGCCG	alt_5240_upstream	13	5	4	6	4	9	2	6	8	3
CTCCCATTATCCTTGT	alt_5240_upstream	212	159	181	146	144	189	171	155	217	159
CACTGGTCTGTTTATA	alt_5240_upstream	161	116	214	154	126	166	111	149	128	173
TCTTAAAACGAGGACG	alt_5240_upstream	85	53	96	78	43	90	35	67	41	78
GTACCGTCCGGATGGA	alt_5240_upstream	52	29	59	49	32	55	43	59	36	58
TGTACACCTAACGGTG	alt_5240_upstream	88	63	99	87	66	75	61	92	47	85
ATTCTTCGGCGGAGCC	alt_5240_upstream	163	79	197	168	82	124	112	106	94	120
CCCAACATAACACTAC	alt_5240_upstream	174	153	224	205	149	191	119	177	139	154
TACACGTTGCCTTTCA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TCGACAGGCCCGTCTA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TCCGCTGTTAAGGCGA	alt_5240_upstream	68	36	90	74	49	53	32	68	52	48
TCTAGTAGTTTTTCTA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
GTACGTCTCTTTTTCA	alt_5240_upstream	88	34	110	94	44	73	41	83	48	99
CGTCACTTGTCTGCAC	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
ACACTGCCGGGTCGGC	alt_5240_upstream	65	33	62	66	36	47	27	46	35	54
CGTCCGGAGATTCAGG	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTTCGTGGACGGA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CATCATTCGGTTAGGG	alt_5240_upstream	72	43	105	94	37	43	33	50	40	69
CAATGTTCCTTCTTTC	alt_5240_upstream	26	20	21	20	11	17	22	17	9	23
CACGCGCGTGTCAGTG	alt_5240_upstream	23	15	25	23	21	13	16	20	20	28
ATTTTTTTTCATTGTC	alt_5240_upstream	56	33	78	56	19	40	27	51	45	38
GATTGAATACGATATG	alt_5240_upstream	57	31	68	63	35	75	31	56	42	53
TGTGTGATGGCCCCGA	alt_5240_upstream	41	22	53	37	18	34	21	41	20	39
TCCTCGCCATTTCTTC	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TTGTACAGCCTCCCCA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGTGGTCGTCGAT	alt_5240_upstream	122	70	138	126	90	125	65	137	59	108
TCTTGTTCAGTCTTAA	alt_5240_upstream	10	4	10	6	2	3	2	4	0	6
AAGTTGAGACTAGAAT	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TACCAGAATTGTCAGG	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
TACTTGTGCATAACCT	alt_5240_upstream	15	5	9	13	2	9	6	12	5	10
CTGACCTTTATTGTGA	alt_5240_upstream	47	38	53	60	41	42	32	54	49	43
GTAAACAGGCTTTAGA	alt_5240_upstream	70	44	82	70	46	61	47	57	48	51
TTGGGCTTCACACGTT	alt_5240_upstream	110	78	113	110	75	103	79	106	90	114
TATGCGCGCCCTAGTC	alt_5240_upstream	43	39	70	59	25	37	33	53	41	48
TATCGCTAGATCATGG	alt_5240_upstream	34	9	47	32	24	42	30	23	19	37
GTCGTATACCTAGGAT	alt_5240_upstream	288	150	330	308	180	270	210	309	236	269
CAGCTTCCATTTGGGC	alt_5240_upstream	62	103	81	76	112	71	106	71	119	82
AATATTGTGATTGCTG	alt_5240_upstream	104	82	139	137	73	104	89	85	76	98
TACACCTAACTGGGCC	alt_5240_upstream	32	33	47	37	44	47	32	52	24	44
CCAGCATCATGCTTTT	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
CAGCCGGTAATGTGTG	alt_5240_upstream	23	30	39	51	36	47	41	25	34	30
GGTTGACTCGACATCC	alt_5240_upstream	138	98	169	165	89	158	109	144	115	144
ATTGATCCTATGTTAA	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
AACACGCCAGCGTTAA	alt_5240_upstream	22	19	19	22	7	22	19	26	15	18
CCACATAGTAGTCCGC	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTCGACCCTCAAT	alt_5240_upstream	0	0	0	0	0	0	0	0	0	0
GGTTGTCCCGTCATAT	alt_5240_upstream	36	31	42	47	33	27	21	33	31	38
ACCGCCCGAGGTCTCC	alt_5240_upstream	96	52	104	80	49	47	39	68	63	86
GGGAACACAAAACACC	alt_5240_upstream	74	47	85	77	37	69	50	73	48	70
CGTGAAGTTCCTTCCA	alt_5240_upstream	33	21	32	31	28	25	25	29	31	27
GATTAGTAGAGGTCAT	ref_2853_RC	177	203	214	197	212	153	240	156	208	131
CCCTACCTGCGTGCGT	ref_2853_RC	25	71	33	35	55	38	68	25	72	24
TCTCCGGGGACGCTTA	ref_2853_RC	9	12	6	3	9	8	9	9	3	7
ATTCTAATTAGTGCGT	ref_2853_RC	68	98	74	61	121	68	96	58	122	51
ACAGGCCTGATGTGTA	ref_2853_RC	181	270	197	136	223	136	229	127	252	149
GGAAACAGTCCACCCG	ref_2853_RC	14	13	13	12	13	13	18	13	10	10
ACTTCCTCAAAAGTAC	ref_2853_RC	16	17	16	10	16	8	22	11	28	14
CTTTTTTTTATGATAC	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TTGTTAGACGGTTTGT	ref_2853_RC	76	138	121	82	149	82	151	72	145	71
CTTGCTTTGGGGGCTT	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TTTCAGCAGAACCCAA	ref_2853_RC	16	32	32	24	40	35	45	33	42	20
TAAGTCTGCGCGAGTA	ref_2853_RC	22	29	20	29	33	25	28	12	30	10
TTATTTGGATTTCGTA	ref_2853_RC	25	29	17	20	23	26	13	23	25	19
TTATGTTCTTGCGCAC	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TATTGCCCTCCGTGGA	ref_2853_RC	24	45	38	23	38	21	38	23	51	22
AAGCAACGGCGCCTTT	ref_2853_RC	42	37	46	27	49	27	50	22	33	29
GTTATATCCGTTGGTG	ref_2853_RC	27	50	44	48	43	28	42	33	58	28
CTTACCCTCCCATCTT	ref_2853_RC	45	79	47	30	66	49	64	32	92	31
GAACTCACTCGTACAC	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TCTGTGCTCGTAGTGT	ref_2853_RC	9	10	9	8	13	14	10	9	12	9
TAGCTTTTCAGGGTGC	ref_2853_RC	55	57	63	55	51	53	52	30	57	31
TATATGTCTCTCTGTC	ref_2853_RC	0	4	6	0	1	0	8	2	4	3
CCGCAAACTTCGTTTT	ref_2853_RC	17	30	26	15	35	27	29	23	34	19
TTCTGAAGGACCGGGA	ref_2853_RC	37	38	32	43	51	34	39	25	51	17
TCAATCTTGGCGTGCG	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
CGGTAGCTCGGGCAAT	ref_2853_RC	15	21	18	21	26	16	25	22	29	11
TGTCACGCATGCATTT	ref_2853_RC	13	23	21	16	19	9	21	13	24	9
ATTATCTAGTCCCGCG	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
CCGTTATTCTCCACTG	ref_2853_RC	18	8	12	13	15	6	14	6	20	4
GCATATGTTCAAATAG	ref_2853_RC	73	94	78	77	91	71	88	57	100	69
TTGTTATTAGCTCAGG	ref_2853_RC	7	10	5	6	5	4	2	3	4	11
GCATCTAAATCTTATT	ref_2853_RC	61	83	67	50	73	40	84	64	84	61
TTTCGCGATAAGGCTT	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TCGCGTTTACAGATCC	ref_2853_RC	20	31	28	30	36	36	48	27	38	23
CTATCGGAGTTACATA	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TACTCGTATGCGAAAT	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
GATGGAAGAGGCGCTG	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
CGTCGCATCGTTTCGC	ref_2853_RC	17	36	43	26	25	27	29	28	34	20
CACCACTTGATTGGCT	ref_2853_RC	38	41	43	34	53	39	53	36	61	36
TGTACATGTGAGAAAT	ref_2853_RC	58	105	65	66	100	61	111	80	101	61
ATGATCATCGAGAACA	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
TGGGCCCATGGCGTAT	ref_2853_RC	58	91	47	54	61	38	72	47	73	51
GATTTTGCGCCCAATA	ref_2853_RC	54	64	78	55	73	67	77	70	75	53
GCAGTAGATCTATGGC	ref_2853_RC	81	88	86	67	86	60	79	56	103	60
TGATATACCCGGATAG	ref_2853_RC	9	25	9	8	11	6	23	8	15	8
GCGCGTTTCATGGTCG	ref_2853_RC	24	44	30	22	21	29	21	23	27	17
AGAACCGTAGAACGAA	ref_2853_RC	0	0	0	0	0	0	0	0	0	0
CGGAACGTGTGATAAC	ref_2853_RC	43	75	73	50	86	65	89	45	75	37
TAGCTTGTCATGCGTT	ref_2853_RC	13	29	13	18	24	14	26	21	18	16
TATAATTATGCCTACC	ref_2853_RC	46	80	72	52	65	63	87	20	91	43
TACTTATATCACGGTT	ref_2853_RC	39	55	42	21	40	31	66	24	65	28
ATTTAGTTTTTTGTGC	ref_2853_RC	18	29	13	7	20	4	28	10	28	10
GAAGGCAAAGGCTTGT	ref_2853_RC	31	34	42	38	41	30	53	29	41	35
TTAGCCCTGCATTGGC	ref_2853_RC	8	4	13	6	11	6	8	7	5	6
AATTCTAAGATGTACC	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
TAAATTAATCTCCGAA	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
CTTGGTGGGAGCTTTC	alt_1687_reverse	7	10	9	13	11	8	12	8	14	9
TCGAATGGTAGTGTCT	alt_1687_reverse	42	46	54	44	55	44	63	38	53	35
GGGTAATTATGACCAA	alt_1687_reverse	21	16	17	16	23	19	21	16	23	18
TTTATCGCATCAGCCG	alt_1687_reverse	17	17	25	15	19	17	16	16	16	11
CAAACGCTAGACTCCT	alt_1687_reverse	56	60	35	36	75	46	55	28	58	33
CGGCCGCTGCATTTCG	alt_1687_reverse	18	19	15	17	33	30	23	16	26	17
TGGGCCGCTCCCTATT	alt_1687_reverse	5	7	5	4	8	7	5	5	13	6
CTCATTCTTGCAGGTT	alt_1687_reverse	12	15	8	12	10	8	17	7	13	4
GCCTTTTAGTTTATTT	alt_1687_reverse	22	22	20	19	17	21	15	17	21	20
GGTCACCATATGTTGG	alt_1687_reverse	24	31	34	24	33	26	26	22	27	23
TGGTCTATATTTTTAA	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
GTCACGCTACAGGCCA	alt_1687_reverse	53	55	75	47	59	64	57	47	48	72
TTTGGATTCTGTTCAA	alt_1687_reverse	10	14	15	18	14	18	20	8	20	15
GCCACCCGGGTTGTGG	alt_1687_reverse	2	3	3	2	4	0	6	1	1	1
CCTCACCAGCCCCGGT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
TCACACGACAGGCCTC	alt_1687_reverse	23	39	28	29	28	24	22	18	32	26
TTCACGGAATCCTATC	alt_1687_reverse	55	69	58	53	81	37	74	34	80	43
ACAGTCTAGAACAGTT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
ATAGCGCATTGGATTC	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTCGCTTTCGTGT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTCCAGCGTTTGT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTGTAAACCTAAT	alt_1687_reverse	7	11	7	2	8	4	3	2	4	5
CATGCAATACGATTTT	alt_1687_reverse	14	8	15	7	16	6	5	8	11	9
GGCCAAGCATGAAGAT	alt_1687_reverse	25	23	17	22	26	18	24	17	24	22
GGTTGTCCCCAGTTAC	alt_1687_reverse	59	69	50	42	73	48	74	44	89	51
CAAATCGTTTATACCT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
TGCCCTATTTCTATTA	alt_1687_reverse	26	21	20	26	31	22	24	24	32	25
CCTCTTTGTCGTAGTT	alt_1687_reverse	21	36	26	17	26	19	34	28	24	20
TTGGCTTTAGGCTTAT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
CGTATTCTAATCCTAT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
TGATAGTCACTTGGTC	alt_1687_reverse	19	37	39	28	45	40	43	30	53	20
TACTCTACATATTCTG	alt_1687_reverse	14	19	13	12	12	16	13	16	14	14
TGTTTCCCATGGTATA	alt_1687_reverse	24	13	13	10	8	11	12	22	14	15
CTCGGAAGCCCCATAC	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
GATTGGGTTTTCGCTT	alt_1687_reverse	32	55	36	42	40	44	65	31	55	33
TCCCTATATATAGCTC	alt_1687_reverse	65	94	89	65	85	48	95	67	76	65
TTGTCCGCGAGATCTA	alt_1687_reverse	69	77	89	67	93	85	103	79	108	79
TTTTCTTAAGTACAAC	alt_1687_reverse	9	25	21	11	22	10	19	2	15	16
TTCAGAAGAACGTGCA	alt_1687_reverse	9	10	9	10	8	6	6	3	3	1
ATTAACGAGTAAAGTC	alt_1687_reverse	14	12	23	22	20	19	30	14	24	21
GCTCTTAAGTTCAGCG	alt_1687_reverse	17	33	24	31	34	28	32	27	28	24
TTGTGTTTGTGACTAC	alt_1687_reverse	19	36	20	13	30	14	28	18	38	21
TTGACTCATGTCAGAT	alt_1687_reverse	30	23	24	13	24	11	23	15	26	14
AATATCGTCGAATTCC	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
GAATTCTATTGATTTG	alt_1687_reverse	56	68	71	53	68	57	60	57	82	43
CGTCCTAGGCTGGGCA	alt_1687_reverse	27	31	31	27	23	26	35	17	42	27
TAAGTTCGTATGTAGG	alt_1687_reverse	16	25	24	18	25	12	26	19	26	17
GCGCGTAATAATGATC	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
TACGAACCCGACCTCT	alt_1687_reverse	54	71	58	42	83	51	90	38	66	52
GTCATTCTGTGAGATC	alt_1687_reverse	5	10	5	5	10	2	4	3	2	7
TCCTGATTGTCAAGAT	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTCCGGACCCTTT	alt_1687_reverse	52	50	56	41	49	53	54	32	56	35
TGGGGCCTTTCTAACT	alt_1687_reverse	42	70	73	53	75	49	67	55	69	44
GGTACGCTAAAGAATA	alt_1687_reverse	52	78	70	60	69	54	70	59	64	43
TGGACACTAAAGTGGG	alt_1687_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTAGATTGACGT	alt_1687_reverse	19	23	25	18	27	18	37	19	28	22
CCGAACGGTGAGGCCC	alt_2412_negative	7	48	15	8	44	11	42	9	35	8
ACTCCAGTGTCTACAA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GACACCGGATAGAATA	alt_2412_negative	15	28	12	15	40	13	31	10	27	10
AAGGGGAGTACAGTCT	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GCGGTATTATCGTTCT	alt_2412_negative	2	1	4	2	2	8	3	2	3	2
ACACTCCCCAAAAGCA	alt_2412_negative	0	35	1	3	52	2	51	1	31	0
GGGTCCGGTTGGTGGC	alt_2412_negative	2	4	4	4	4	2	8	2	12	5
TACACCGTATCACGTA	alt_2412_negative	4	5	0	4	15	6	24	6	18	7
TGGGAGCGCCGCATTA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GGACTTGAGACTGGGT	alt_2412_negative	17	27	13	13	21	10	40	12	31	16
TTATAATAATCTATCA	alt_2412_negative	17	33	27	24	40	21	28	9	34	9
TTTTGATTCTTTTCCC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TTTTTTAGACATGGTC	alt_2412_negative	17	31	14	27	38	23	44	18	51	19
TATTGGGTTCTTGCAT	alt_2412_negative	18	28	15	16	25	11	35	13	31	12
ATAAAGATGTTGGAAT	alt_2412_negative	20	27	19	21	28	14	47	24	40	25
CATAATTCGTCGTAAG	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TTAAAATCCTGAAGTG	alt_2412_negative	1	5	1	2	2	2	5	1	3	0
ATACCCAAACAGGGTG	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
AGCCTCCGCTGTCACG	alt_2412_negative	5	5	2	1	2	2	4	3	10	0
TTCCCTGACTGGACAC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
AGGCCCCCGTTTATTT	alt_2412_negative	36	50	46	34	55	36	47	38	65	35
TGGTAGTGCCCCTGGC	alt_2412_negative	38	87	48	34	104	34	85	30	85	32
ATTCATCTGAGGTGTA	alt_2412_negative	3	9	12	6	11	5	10	7	13	6
TTACGTCCTTCATCGT	alt_2412_negative	54	133	64	61	125	48	116	62	106	53
TACTTTCCCCAATGGA	alt_2412_negative	17	24	13	24	25	7	27	13	28	8
TCGTTACGTGACCCCA	alt_2412_negative	15	19	16	13	23	11	14	11	16	16
TATTAGATTGAGTGTC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CCGAACGGAAGCCGCT	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CGTATGGCTAGTCGTT	alt_2412_negative	13	34	14	13	21	19	26	16	29	9
TTCGTTGAGGTCCGTG	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CATTAGCAGGCTGGTA	alt_2412_negative	35	51	42	25	63	24	66	25	45	34
AATTCGTGTGTGATTA	alt_2412_negative	111	274	142	117	231	110	233	93	252	120
TGTAGTTTTTTATTAT	alt_2412_negative	2	11	3	0	0	2	4	1	5	2
CCTTTGTGTCAATAAT	alt_2412_negative	14	22	6	7	11	10	30	13	17	9
TGTATGCTTCACTGGT	alt_2412_negative	37	67	30	40	98	22	64	33	72	22
GCCAGGCTATAGTTCG	alt_2412_negative	13	27	15	15	38	13	31	11	37	14
ATTATGCCCTCATCTC	alt_2412_negative	25	49	36	25	49	28	48	29	39	19
TTGCGTATACCCGTCA	alt_2412_negative	5	16	8	4	20	7	13	6	16	9
TGTACCCACATGCTTA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TGACTCATTCTCTATC	alt_2412_negative	9	28	15	6	20	11	23	9	20	10
GTGGCCTACTTGTGTT	alt_2412_negative	12	17	12	9	17	7	20	6	15	10
CTGCTCTCGTGCGGCT	alt_2412_negative	4	4	4	2	5	5	12	10	14	3
CCCTCACGAAGCTCCC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CAGTTACCACAGAGAA	alt_2412_negative	14	33	19	14	29	17	31	18	20	15
AAATAGAGGAAGCCGT	alt_2412_negative	3	6	4	2	6	2	13	2	13	3
CTAGGTACGTCCGGTT	alt_2412_negative	2	8	1	4	8	4	8	3	7	3
ATGGCTTAGTATTAAT	alt_2412_negative	1	0	1	2	0	1	2	1	0	1
CCAGCGATACGGGGCA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
AACTTGTGATACCTAA	alt_2412_negative	57	111	70	56	84	57	107	67	94	34
GATCGCTAATATTCGT	alt_2412_negative	17	37	22	18	30	18	33	17	31	12
ACACTCCTACCTTGGT	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CCTTGGCGGTGGCCTA	alt_2412_negative	12	18	13	13	13	10	28	7	25	5
TTAAGTACGCGAGCTG	alt_2412_negative	23	42	30	32	36	24	37	26	49	23
AAGACCAGTATAGGTC	alt_2412_negative	2	3	2	2	3	4	4	4	6	0
TAATTTTGACGAACTC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TGCGCAACGATTTATC	alt_2412_negative	29	44	52	18	56	21	52	23	56	36
CTCTAATGGGCGCCCG	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GAGTGAGGCTATTTCT	alt_2412_negative	51	88	63	73	97	70	96	43	111	57
CTACGGGCTCGCTATA	alt_2412_negative	8	17	6	13	15	9	13	11	15	2
GCTTATATTGCGTATG	alt_2412_negative	4	7	1	3	8	5	10	5	5	3
GTGATCGTCATGTACG	alt_2412_negative	4	8	8	8	14	7	17	2	15	8
CTGTTCATGAGTTCGA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
ACTTGTCTCTACATTT	alt_2412_negative	9	35	16	6	31	9	29	12	30	16
CGTTTAAATTCACAGG	alt_2412_negative	6	15	4	5	11	7	5	4	6	6
GCTCTTCATTGTTATT	alt_2412_negative	12	38	19	22	36	14	33	18	32	18
TCGACTTTAATCATCA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
AAGTATGGAGGTGAGC	alt_2412_negative	8	16	7	7	22	17	13	8	14	10
GGGCATGATGTATTCA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
AACGCAACGCTTGCTC	alt_2412_negative	6	5	6	2	6	4	13	2	9	8
CCATGTTCAAACATTT	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TGGCACACTTAAATGC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TTGCCGAGTTACGCAT	alt_2412_negative	38	61	48	36	48	43	80	38	99	46
GTCTCTCCCTTGTGAC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TATTCCTCTACTACTA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GGCGAGCTTTTTTGCC	alt_2412_negative	21	44	23	24	41	22	42	17	42	16
TCCTTACCAGTACGCT	alt_2412_negative	13	7	15	8	4	9	10	6	8	3
TATGACTAAATCCACG	alt_2412_negative	64	96	68	65	100	69	77	51	105	43
CCGATGCGTCAATTAA	alt_2412_negative	71	111	51	56	101	46	102	38	117	55
CTAATGACTAATTCGA	alt_2412_negative	25	45	34	32	53	36	43	24	56	34
ATTGGTGGAAAGCTTA	alt_2412_negative	7	26	9	17	14	11	29	11	21	9
TTATTGCCGGCCACAA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CGTTCAGCTACTCCGG	alt_2412_negative	27	53	40	26	43	20	54	27	44	26
AGAGAGTAACCTGTGA	alt_2412_negative	19	31	22	26	22	27	38	19	50	20
CAGCGTGAATCACGTA	alt_2412_negative	0	1	1	0	3	0	0	0	6	1
TTGGGTTCTGGTTTTT	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TTTCGCAATCAAGGAC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TTCTGCATCATGGTTT	alt_2412_negative	11	26	19	19	27	27	35	15	36	15
TATTAGATTCTGTCAC	alt_2412_negative	2	3	5	0	7	2	8	1	9	2
CGCCAATGCGAATAGA	alt_2412_negative	23	54	30	22	55	22	51	20	55	16
TCGCCGAAACCATTTT	alt_2412_negative	5	11	5	4	7	1	7	3	7	2
CTTTTGAACTATTCTG	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
AAGATTTGATATACGC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GCCGCATTACCTGTTC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CTTACTGATGTAGTTC	alt_2412_negative	21	40	23	24	43	13	54	18	51	14
CCCGGTAGGAATTAGC	alt_2412_negative	14	25	11	8	24	18	20	14	38	15
TACGTGTAGCTTGTTA	alt_2412_negative	1	7	5	9	16	6	10	10	8	5
GATAACGGTTTTCGGT	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TTTATATAGTTTTTTT	alt_2412_negative	1	1	5	5	3	3	6	1	3	1
GTTGGCTCCTACTTTA	alt_2412_negative	8	4	12	3	13	7	10	1	13	4
TCAATACGCCCTTCGA	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TGATCTCCTTGTTTGC	alt_2412_negative	69	136	86	60	140	61	166	58	149	46
CCGTACTTCGCGGTCT	alt_2412_negative	10	4	8	6	12	2	5	4	8	6
ACACTAAAGCCCTGGG	alt_2412_negative	15	26	14	6	19	16	20	11	28	8
AGATGATTTTTCCGCG	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
AAGTTACTGCCTACGC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
TCGCTTACAGGCATAC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CGTGCTGCTATATACG	alt_2412_negative	3	10	4	7	14	10	9	7	11	5
AAGTTACTGACTACGC	alt_2412_negative	81	148	105	80	138	75	149	71	169	58
CGTCCATTCGAATCAG	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
CTAATGCAATCTGACC	alt_2412_negative	0	0	0	0	0	0	0	0	0	0
GCTATCTGGAGAAGCT	alt_2412_negative	32	62	36	33	64	37	69	33	73	42
CCACGATTGCTGACCA	alt_2412_negative	6	9	8	6	5	1	6	2	10	6
TGCACTGTAACCGTAT	ref_3933_RC	45	61	50	67	73	53	65	32	68	41
GGCTTGAATGTGATTG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TCGAAGTGTTAGATTC	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CCTGAAGTTTGCATGT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CGGTGAACTCGCGCGA	ref_3933_RC	8	4	8	8	0	6	8	4	4	7
TCTAACTTGCAATTCT	ref_3933_RC	7	8	12	7	9	5	14	8	10	6
GACATCCTGTGGATAG	ref_3933_RC	48	61	51	42	57	48	60	34	55	33
ACCGAAGCGTGCTGTT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CGACGAGACAAGTTAT	ref_3933_RC	14	25	24	17	19	20	25	18	17	16
TTAGTTTCCCACTAAT	ref_3933_RC	41	57	48	37	81	49	76	36	72	43
TAGTGTTGGTCCGTCT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CTGCGGCTCGAAGTCA	ref_3933_RC	13	27	18	19	20	7	30	25	28	20
TTGCGATTACTTCTCG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TTACGTCTAAGCGCCA	ref_3933_RC	13	15	15	14	15	9	27	14	16	19
TTGTTGAACTTAGTTT	ref_3933_RC	35	64	46	50	68	36	65	24	68	41
TAAGTAGATCTCGTGT	ref_3933_RC	18	25	12	12	19	20	25	17	25	17
TAAGCCTACTAGGTTG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CTCTCGCTAGAATACG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CAAGTTGTCCTTTGTG	ref_3933_RC	44	59	37	37	51	30	60	36	54	27
TGGCAATTCCATCAGA	ref_3933_RC	41	55	56	61	47	35	50	38	47	39
TGGGAATTTTATAAGT	ref_3933_RC	14	17	11	10	24	12	13	9	8	7
ATATTAGGAGCGAAGT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
AAAGTCGAGGCTATAC	alt_3933_RC	12	12	14	6	13	11	16	11	15	1
GTCTCGAATCTATGCG	ref_3933_RC	74	83	76	65	103	78	101	71	107	63
TCCTTGGGGAGTGCTT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GACTACTTTGTTTTTT	ref_3933_RC	0	0	1	0	0	2	0	1	0	2
ACTATACCAGAGTGGC	ref_3933_RC	1	1	4	1	2	3	1	4	2	1
AAGGGGAAGTCCTTGG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
ATACACGATCCTAGAC	ref_3933_RC	29	51	47	35	46	32	42	27	58	31
CCTAGTAACGAGATAG	alt_3933_RC	102	127	95	122	125	78	145	105	129	94
TAGTTTTAAGATGTCG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TGCAATAGTAGGGCGC	ref_3933_RC	3	6	8	10	4	5	8	6	8	7
TTATCGCTCCGTCGGC	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GAGTCATAACACGGAA	alt_3933_RC	14	7	4	3	12	3	13	10	7	2
CCTCTCAACTGTTCGG	ref_3933_RC	30	41	33	39	34	31	27	30	35	28
CTACCTAACAACCGCG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GATAGGTTCGAGGATT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TTAGCGGGAGTTTGGG	ref_3933_RC	5	10	12	19	13	11	14	14	13	14
TGTGTTTCCGTCATTG	ref_3933_RC	51	56	52	45	79	41	55	30	68	44
TTGCTTCCTCAGCCCG	ref_3933_RC	3	14	15	14	5	5	10	9	10	10
AGAGACATAAGAGAAC	ref_3933_RC	31	44	31	21	35	28	43	19	33	24
TTCGTCTGTTTAAACG	ref_3933_RC	59	81	63	52	61	58	67	48	70	46
AGCTCGTAGTCAACGA	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GACTAACGAGACCAAG	ref_3933_RC	8	24	17	27	30	20	29	20	29	10
AAGTTCTCCCTAACAC	ref_3933_RC	30	61	30	30	56	29	81	28	54	24
ATGCAGACGTCTTGAG	ref_3933_RC	7	19	13	4	8	9	16	8	11	5
GCGGTAACAAATTTTA	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TTTTCGGTACGCAATC	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GCAACGTTCCTTATTA	alt_3933_RC	6	8	4	6	3	7	3	3	5	2
GAGAAAATTGTTTTGT	ref_3933_RC	47	58	60	38	52	55	66	51	64	51
GTTTCAGTGCGTTCCC	ref_3933_RC	14	10	9	13	17	11	17	10	18	12
TCGGCAAGTCGGACAT	ref_3933_RC	3	2	7	3	1	3	3	2	2	7
TCTCGAGCGATGTGCA	ref_3933_RC	6	15	4	3	10	3	8	5	11	6
TAATAAACGTTCAACA	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TTTGTATCCGTTTGAC	ref_3933_RC	2	7	5	2	6	1	10	3	3	1
AACCCGTGCTCTATGG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GCGATTCTTGCTCTGT	ref_3933_RC	17	7	8	9	13	2	13	5	7	5
TCAATTTCAGCGCCAT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TAACGACTCTTAAGGC	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GACGTTTCTAGAGCCA	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CTCTTCTACTTGTCTA	ref_3933_RC	42	75	71	64	69	58	76	35	70	42
TATGACATGTGTAATT	ref_3933_RC	2	0	1	0	2	2	0	4	1	2
GCTGTTACCGCCAAGC	ref_3933_RC	29	43	44	42	46	31	49	47	49	26
TTGTACCTTTCCGATT	ref_3933_RC	12	8	9	12	16	12	14	16	26	10
GAGTATAACAGTGGTT	ref_3933_RC	26	30	26	24	29	21	22	14	23	18
TTTGTTAATTTCGGTC	ref_3933_RC	27	30	40	22	39	27	29	22	33	30
GGGCCACGGCACTGTT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CTGTGGATCTAGTCAG	ref_3933_RC	7	15	8	8	19	5	15	4	8	8
TCGTCAGCCTATATTA	ref_3933_RC	27	29	29	25	39	25	41	16	38	13
ATTGCTGTGTCCATCA	ref_3933_RC	19	24	22	21	18	23	18	14	24	26
TTCTCCACTGTCCGCG	ref_3933_RC	60	55	58	66	71	40	87	59	90	52
ATCTCAAAGAAGGACC	ref_3933_RC	17	29	22	21	29	17	36	16	30	19
GACCTGGCAATATCAT	ref_3933_RC	2	4	5	2	3	1	1	1	5	1
AATGAAGGGCCTTCCA	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CCATCATTGGTTTTCT	ref_3933_RC	128	125	130	104	132	112	116	102	143	77
CTTACCTCATCTAGGT	ref_3933_RC	37	104	45	45	139	32	118	27	139	48
CGGCTCACTGACAGTA	ref_3933_RC	9	10	9	4	12	5	14	7	7	6
TAATTTTAGTCTTGTT	ref_3933_RC	10	29	9	14	17	17	14	17	21	11
CTTAATTGGCTCATAC	ref_3933_RC	5	1	3	1	8	0	2	3	6	5
CATCGTAGGAAGCGGC	ref_3933_RC	14	20	18	8	14	18	16	9	26	11
TAAAATCGTTCATTAT	ref_3933_RC	8	7	13	8	16	9	18	13	14	13
GTAACCCAGTGCAGAG	ref_3933_RC	30	22	40	35	36	22	35	27	28	36
TCTTACTGATCTAGAC	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TCGTTTAATAAAGTAC	ref_3933_RC	7	22	4	7	24	2	15	6	18	6
ATTTTCCCTGACCGCA	ref_3933_RC	27	29	23	30	35	28	32	26	35	25
AGTTGGCAGTGCGTCC	ref_3933_RC	12	12	4	9	8	14	13	4	10	6
TTTTCATGGTGATCTT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CTTCCGTTCCGCATCA	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
ATGTGCCTGGCGGACG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
CTTGACAACGTGCACG	ref_3933_RC	18	25	37	15	33	23	41	14	24	13
TTCGTCGGCATGTTTG	ref_3933_RC	36	59	36	49	37	34	35	31	46	29
TACTGATTGGTGGCTC	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GTTGCATAGTCCCAAG	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TTAGTCGTTTTGTTAT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TTAGTATCGACCTGTT	ref_3933_RC	137	166	172	128	163	125	148	89	145	122
ATCTAGCTTCTACGGT	ref_3933_RC	2	3	5	2	2	3	2	1	0	1
TGTTAAGATTCTTGCA	ref_3933_RC	48	91	86	52	73	57	90	52	93	46
CTATTCTGGGAGGAGA	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TTTTCATCTTTGATCT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
GGGAGAAAGTTTAAAT	ref_3933_RC	0	0	0	0	0	0	0	0	0	0
TCGGGATATTCGGCCA	alt_3933_RC	15	25	27	18	29	12	16	18	21	20
TTATTAATACACAGAG	alt_3933_RC	12	9	6	11	8	5	12	6	5	3
GCCGCCGGGTCTTAAT	ref_3933_RC	42	44	35	37	28	39	42	21	47	27
TTGTTGCTATTTACAT	alt_3554_upstream	30	12	45	22	14	36	11	25	18	30
ATTTAAGGCACCGTAT	alt_3554_upstream	70	27	67	63	13	55	25	55	28	48
GGACCTCCATCGCACC	alt_3554_upstream	4	0	1	2	0	1	2	2	1	1
CTTTCCAAATTTCCTT	alt_3554_upstream	19	2	14	12	11	24	10	14	12	12
TAACGGGGTTCGTGTG	alt_3554_upstream	118	52	121	95	46	124	49	116	63	123
TGTCAGTATTATCTGA	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCGCTTGGAAAGG	alt_3554_upstream	107	51	111	85	39	81	44	72	66	94
GTCCCACTAAAGTAAA	alt_3554_upstream	82	75	141	101	75	90	81	76	64	96
CCTGAGCCATTCTCCG	alt_3554_upstream	111	75	127	110	66	108	58	104	77	102
ACGCGAAATCCCTCCA	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
TAGTTTAACCCCCAAC	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTGGCAGTTCCAC	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTCGACGGCGCC	alt_3554_upstream	93	43	109	104	31	86	47	79	53	83
GCCCAAGTTCGGACGC	alt_3554_upstream	1	0	2	2	1	0	0	2	1	1
CGGCTCCATTAGTAGT	alt_3554_upstream	49	18	45	41	24	66	26	48	29	35
CAGCAGATATTCGGGG	alt_3554_upstream	61	21	74	37	22	35	15	40	29	38
TCGCTTTTGGGTTGCC	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCTATCGTTCTAG	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTGGAGTGTCGC	alt_3554_upstream	9	2	3	7	5	3	0	5	0	2
CGAGCTGGGGGAATCC	alt_3554_upstream	8	4	13	16	7	12	7	2	8	11
TCTTCTTCGTCAAACA	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
CATCGTAACCTACGTA	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
CTATAATGTCTCGTTG	alt_3554_upstream	32	17	11	26	19	14	15	17	17	23
ACTCCATTCCTGCGTC	alt_3554_upstream	38	36	32	27	41	23	56	21	37	35
TGACACGGAGGCAACT	alt_3554_upstream	24	13	35	18	11	39	5	35	11	29
GATCCTACGGGTCGCG	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCTTGGTCCATAT	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
CAATATTATACTTGCG	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
AGTTAGATGTGAGTCA	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCTTCACTGCTTC	alt_3554_upstream	5	3	8	6	5	10	3	10	1	2
CCTCCTCGTTCGTCGA	alt_3554_upstream	28	14	36	27	11	32	7	30	10	23
TAGGAGCGCGCATCTT	alt_3554_upstream	6	3	15	2	5	7	6	2	2	11
TGGCTTTTGACAAATT	alt_3554_upstream	78	28	89	66	36	74	37	56	39	66
CTGGCTTCGTGTTCCA	alt_3554_upstream	76	25	56	33	25	70	23	50	25	53
GCCGTCTAGATTGATG	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
CGTCACGCTCTCGGTA	alt_3554_upstream	41	16	45	28	12	30	19	22	24	33
CTCGTACACTGCGGGC	alt_3554_upstream	1	1	0	0	0	0	1	2	0	0
GTCCGATGATCGCCGC	alt_3554_upstream	24	7	26	12	9	21	12	8	7	14
CCATCAGACTGCGACT	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGTAGGAGAAATT	alt_3554_upstream	646	253	719	525	246	556	248	515	249	518
AGAGGGGCCTGCAAAT	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTTGTTAAGGCT	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
ATTCTCTCGAGTCCTA	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
GGATAAATTGTTTTGA	alt_3554_upstream	12	7	15	8	15	12	6	8	6	20
ACCGAAGGCGCGCTTG	alt_3554_upstream	28	10	25	20	11	21	9	27	7	17
TTGCGCCAACCGATAA	alt_3554_upstream	6	7	16	13	4	16	4	10	8	9
TGTGCCCCAGAATCTT	alt_3554_upstream	27	5	24	12	13	24	17	20	15	14
TTAGCCTCCGTCTTCC	alt_3554_upstream	9	11	4	3	2	9	6	6	4	5
TCTATTTCGCTGTCGT	alt_3554_upstream	0	0	0	0	0	0	0	0	0	0
GTACTGTCTCCCCTTG	alt_3554_upstream	7	30	1	1	26	8	39	1	34	6
GCTTCAGTAGTCACCA	alt_3554_upstream	83	45	86	72	30	81	35	79	27	60
AGTCGGTTTTATAGTT	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
ACTTTGTAGAAAGATT	ref_1014_missing	40	56	50	59	49	55	58	43	65	39
CCTCTCCTAACAATCG	ref_1014_missing	10	19	18	14	19	13	26	13	18	20
ATTTTCACACTCGTCT	ref_1014_missing	23	19	29	26	20	23	15	19	32	15
TTTCCTTATCTTATCG	ref_1014_missing	40	40	44	46	29	36	37	33	33	31
GAAGGCTCGATCCGGG	ref_1014_missing	18	12	28	12	13	18	27	18	26	21
CTGTGGTCGTTATAAT	ref_1014_missing	7	7	10	12	2	5	9	7	9	11
TCACGTATGCACAGGA	ref_1014_missing	22	14	16	15	28	10	19	22	18	9
GTCCCTCGTATGTGTC	ref_1014_missing	20	19	45	12	25	19	13	18	17	16
TCCATTGAGAACTAGG	ref_1014_missing	53	77	66	58	62	46	73	51	72	55
CTTGGTTCCGCCCCGT	ref_1014_missing	63	62	66	67	67	63	65	71	72	48
CATTTTCCTTCCAATT	ref_1014_missing	19	35	54	30	33	28	56	31	42	29
CAGCGGACTAGAACTC	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
GATAGCGGATTCGTAA	alt_1014_missing	33	41	41	37	52	35	48	29	62	34
ATTACGGGGGGAATAT	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
TAATTCTGTAGGTAAC	ref_1014_missing	50	51	87	63	66	65	42	57	55	41
CGTCATAGCATCATCC	ref_1014_missing	20	57	25	17	59	13	41	19	43	22
GTCGGTTTGTTATAGG	ref_1014_missing	64	61	71	56	50	66	67	63	80	49
CTGCGTGTTCGTTAAA	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
TTACATGTTGGCTCTC	ref_1014_missing	90	76	91	98	98	80	99	87	87	91
TATTAATTCCGGCCTC	ref_1014_missing	35	48	46	34	32	38	32	37	30	31
ACAGTCTCGTATATCC	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
ACACAAACCTACAGGT	ref_1014_missing	1	6	3	2	2	1	3	2	5	3
ATGTTTTTGTAAAATG	ref_1014_missing	42	46	63	50	37	45	50	41	49	32
GCGTCCCACGGATTGC	ref_1014_missing	10	7	14	7	19	5	16	11	11	3
TAAGTGGGATAATGAT	ref_1014_missing	39	33	52	43	41	42	36	37	38	44
CCCATCGCACAGTCGC	ref_1014_missing	11	17	11	11	22	11	11	10	16	10
AGGTCTGTCCAGATAA	ref_1014_missing	12	11	15	8	10	18	7	7	15	8
CCAACCAACGGTATGA	ref_1014_missing	39	57	46	55	68	49	64	63	58	37
TCCGGTGGCACCTATA	ref_1014_missing	1	19	4	7	10	2	14	4	20	4
TATCTTTATTCAATAT	ref_1014_missing	6	1	1	1	2	2	2	2	9	2
GACGTATTGGAGGATA	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
GTGTCAGCCCCTCGCA	ref_1014_missing	25	25	42	32	32	29	25	21	17	24
TAGTTCTTTGTAGAGA	ref_1014_missing	66	65	67	67	66	52	78	60	65	48
GTGCTAACAATAAGGA	ref_1014_missing	47	46	68	49	57	46	47	46	61	50
GTCGGCAATATGCTGG	ref_1014_missing	17	23	16	8	17	13	15	8	10	13
GGGCATTTATACACGT	ref_1014_missing	9	9	12	9	13	5	14	2	11	9
TCTACTCATTGGGCTA	ref_1014_missing	90	88	107	86	97	91	114	72	109	62
GCGGCGGTGCATATGC	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
TTTAGCGATCGCGTAC	alt_1014_missing	8	7	4	2	3	4	3	2	7	0
GCGGCGGTGCATAGGT	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
ATGGGCGGTAATCCGG	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
GTGGATTGTTGCTCAC	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
GTTGGCTAAACGATTT	ref_1014_missing	3	4	4	8	6	3	2	7	4	3
GACCATCTAGTACGTT	ref_1014_missing	46	75	50	48	62	36	57	51	60	41
CTGTCCGTTCAGCTAT	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
TGATCTGAATTTTCTA	ref_1014_missing	17	14	26	26	31	28	16	25	30	17
GCAAAGGGCCCCAATA	ref_1014_missing	137	139	164	142	143	123	162	129	146	95
CTTGGTTACGCCCCGT	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
CTAGTCTCTATATTCG	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
GATAACTCTAGCCTTG	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
ACCGATGACGCCAAAC	ref_1014_missing	0	0	0	0	0	0	0	0	0	0
ACACCCTACTTCGGCC	ref_2028_reverse	91	151	88	81	159	78	145	76	179	60
CTGACTATGCAATGAG	ref_2028_reverse	6	15	6	4	9	9	12	9	10	6
GTGTTCTCCCGCTAAG	ref_2028_reverse	50	66	34	41	72	22	64	29	52	29
TGTGATCAGTGTTGGT	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTATTAGCACGCCTCC	ref_2028_reverse	9	27	16	11	31	10	13	12	16	11
CTATCGGTCTCGGAAC	ref_2028_reverse	21	33	22	26	41	18	44	19	37	17
TTGAGGGGGGTCGGGG	ref_2028_reverse	11	12	13	14	18	3	15	13	7	5
CGGACACCTCATACAC	ref_2028_reverse	79	80	75	85	85	84	117	65	102	42
CAATTTTTACTTATAC	ref_2028_reverse	27	17	18	11	23	30	20	14	23	10
ACCTCTTAGTCTCAAC	ref_2028_reverse	23	21	24	18	29	22	29	18	41	22
GTGACTTTCTTCTTGG	ref_2028_reverse	18	42	39	30	48	20	25	38	40	26
CTGATCTAGTGTGAAC	ref_2028_reverse	2	12	7	6	6	7	8	5	9	4
TTGGAGGGTGCTGAGG	ref_2028_reverse	66	81	57	39	79	60	73	48	81	50
TATGCGGCCACTCGAG	ref_2028_reverse	5	8	9	7	14	4	17	5	15	4
ACCTGAAATGCAAGTC	ref_2028_reverse	23	21	29	33	21	22	37	27	33	13
TCAGTCATCGGCGCCA	ref_2028_reverse	12	13	20	11	16	15	9	12	16	7
GTACTAGGGTTCGATC	ref_2028_reverse	21	35	34	29	33	33	29	23	37	19
TTCCGCGTATGACTAA	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTGGAATGCTACGTGG	ref_2028_reverse	6	11	16	12	11	6	18	13	18	8
GGTGTCGGCAGGCCTG	ref_2028_reverse	245	268	354	327	251	278	285	282	275	256
TGTTATAGGCACAGAG	ref_2028_reverse	13	26	6	14	14	9	23	20	21	13
CAACATACCCGTCATA	ref_2028_reverse	2	7	8	5	12	3	13	9	11	2
GAGAGCGGCTCGTGGC	ref_2028_reverse	82	93	94	62	87	70	67	53	100	69
CCATTCCCAAGGGCGA	ref_2028_reverse	7	23	25	28	31	22	20	17	29	16
GCTGCTTGGGTAAAAT	ref_2028_reverse	18	25	30	15	17	19	28	28	27	23
ATGAGGAGGTTTCTAG	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
GATTATCCGTTTTGAG	ref_2028_reverse	19	21	21	11	9	17	17	12	26	15
TAGTTCTATTCAGACA	ref_2028_reverse	10	13	16	9	14	4	15	8	18	7
AAGGGGAACCCTTTAA	ref_2028_reverse	24	36	41	45	41	28	47	25	41	42
ACGGGCCACGTGCAAT	ref_2028_reverse	84	98	90	90	131	86	103	65	100	76
ATGGATGTTCCAGGTT	ref_2028_reverse	185	332	217	200	355	130	393	180	400	156
AATGTTTGAATTAATC	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
GTGGTTTGAAAAGGAT	ref_2028_reverse	12	17	29	16	25	17	19	25	32	24
GGCCTGTCTCCGAGGT	ref_2028_reverse	5	10	12	14	7	8	10	3	8	7
CTTGTCCTATAGACTA	ref_2028_reverse	36	46	42	30	42	32	37	22	56	28
AACGCCCTCCTAGCCA	ref_2028_reverse	8	12	11	2	5	10	11	9	12	4
ATGTCCGCGTCTGGTA	ref_2028_reverse	8	6	3	6	8	3	4	4	5	3
GGATTTGTAAAGCTCA	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
GTTCCAACGACACCCT	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCGTCGTATCCAT	ref_2028_reverse	2	6	3	1	5	2	6	0	3	2
TGATTCATTCTATTTT	ref_2028_reverse	41	28	40	36	49	47	58	40	41	31
CACCTCAACACCTGAA	ref_2028_reverse	7	20	19	9	23	14	16	15	18	15
TTAGTCCTGGATCTTT	ref_2028_reverse	2	6	1	7	3	1	1	9	8	1
CGCTTTCCCGGTTTTC	ref_2028_reverse	33	64	54	71	58	56	62	58	68	43
CTCTGGAGTTTGTTTA	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
CGTAACCGGCATAAGC	ref_2028_reverse	11	25	14	8	14	14	15	14	33	9
CGCGGTAATGATTTTT	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
CCCTCTTGTCGAAAAT	ref_2028_reverse	6	14	6	6	8	8	7	7	11	4
TACCTTGGGTTAAGGC	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTTCGCGTGTCTC	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
CAACTAACTGGAACAA	ref_2028_reverse	25	39	31	21	31	24	39	19	48	19
GATGTATAGTTCTTAC	ref_2028_reverse	13	24	22	17	13	20	25	15	23	15
TGACCTGACCAACTTA	ref_2028_reverse	127	204	170	123	178	135	202	104	207	117
CCATTATCACAGCCGA	ref_2028_reverse	9	7	5	7	11	2	3	0	6	6
CACTTCCTGCCGTACT	ref_2028_reverse	73	81	75	60	84	68	81	69	80	63
TGTGCGCTACGCCAGG	ref_2028_reverse	9	11	5	3	7	8	2	1	10	6
CTCATATAACTCTCCT	ref_2028_reverse	0	0	0	0	0	0	0	0	0	0
TTGCTATGACTGTTGC	ref_2028_reverse	6	2	8	7	8	5	5	3	9	3
GAATCTAATTCTTGCG	ref_2028_reverse	11	14	17	15	10	12	21	9	23	10
CCTTTTTCTGAGAAGA	ref_2028_reverse	58	65	37	67	59	47	77	38	99	44
CATCCTGAGATTAATT	ref_2028_reverse	141	155	163	148	200	162	141	135	190	145
TTCCGCGCGGTTTCGC	ref_2028_reverse	38	37	47	43	44	42	46	46	28	25
ATGATGTAAGGGGTTG	ref_2028_reverse	101	107	114	120	119	90	114	83	112	85
AGAGATCACTTATTTA	ref_2028_reverse	29	47	29	30	38	29	49	32	33	34
CCCAAATCGTTATCGC	ref_2028_reverse	6	24	12	6	14	11	20	10	17	2
TTCGGAGAGCATAAAT	ref_2028_reverse	5	8	7	8	15	5	13	10	13	6
CCTCACCACTGGTTAT	ref_2028_reverse	12	16	17	18	16	5	21	6	28	18
TATTAAATTGTTACGC	ref_2028_reverse	4	2	7	3	4	7	12	2	14	4
GTAGGTAAGACCAAGA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
CATACATAGCATAGGT	alt_5974_new	44	56	38	27	53	44	79	40	56	42
GTCACGTTGCCACGGT	alt_5974_new	75	88	82	81	97	60	120	74	108	68
GCGCTGCCACTCCCAT	alt_5974_new	39	68	35	35	58	32	50	36	62	42
TAAAGGTGCCGGGCAA	alt_5974_new	83	84	94	91	92	60	92	72	127	83
ATGGAAACCAATATCA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
AGCTTTTAGCCACCCC	alt_5974_new	11	19	11	13	23	6	16	13	24	4
TGTAATCTCTTGTCCT	alt_5974_new	16	23	15	24	13	17	20	13	18	10
ATCCTTTGTAGATACA	alt_5974_new	25	18	20	25	18	14	32	12	34	20
TTTGCCCATAATCGTT	alt_5974_new	35	38	51	26	43	31	47	31	57	26
GGTTCCTCTTTTCCCA	alt_5974_new	31	39	46	23	33	39	39	27	37	35
CCGTTGTCTGTATGTG	alt_5974_new	7	7	5	9	7	3	5	2	6	0
CATCCCTGGATTATGT	alt_5974_new	14	8	12	9	17	11	12	11	20	12
GGGCACTTGAACTTTG	alt_5974_new	26	35	31	25	43	23	25	13	28	29
TGTCAGATTTACCTCT	alt_5974_new	23	30	31	30	23	19	21	18	30	19
TATTTACACGTTGTCT	alt_5974_new	6	4	9	0	7	4	12	3	3	5
TGCGTGGTAATGCCAG	alt_5974_new	48	60	64	49	61	47	66	54	57	28
AGCTTAGTGGGAGATG	alt_5974_new	6	6	11	5	10	9	14	8	6	5
GATTTCGTCGCACACG	alt_5974_new	101	87	109	84	114	72	110	91	132	82
TGTCGATGTCTACGTG	alt_5974_new	29	43	36	30	32	23	46	32	44	28
ACAAGTATATGCGATA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
TGGGGTACTGTGTAAA	alt_5974_new	2	1	5	1	7	2	5	6	10	4
CGCGCGACGGTCCCCT	alt_5974_new	76	75	89	55	97	68	77	70	93	57
GCCGCTCCTCGGTATC	alt_5974_new	46	68	63	46	53	42	73	44	75	37
ACTGCACTAAGACCTC	alt_5974_new	20	37	16	10	18	15	26	16	25	13
CTCCAACACCCTTTCC	alt_5974_new	0	0	0	0	0	0	0	0	0	0
GTGTAACATTCTCGAA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
ACGTCGATTCATCCTC	alt_5974_new	19	17	10	19	27	14	15	14	40	18
TGCAGCCTGGTAGGCT	alt_5974_new	25	31	26	14	29	17	34	23	26	28
GTTGTAATGTGCTCTT	alt_5974_new	40	55	27	53	50	36	44	43	62	37
TGCTAAAGGTTATTCA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
TCCGGCGAGCTCCCGA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
AATCTCACACAACATT	alt_5974_new	37	39	50	48	45	44	51	40	41	38
GAAGAAACCCGGTTCT	alt_5974_new	43	58	54	40	63	62	66	63	67	54
TAACCAGGCGTACCAC	alt_5974_new	15	12	16	14	12	8	26	20	20	11
TCTTCTGGTCCCTGTA	alt_5974_new	39	53	50	49	56	42	56	42	58	46
TTCGAAGGTTAGTCTG	alt_5974_new	22	48	31	31	48	21	47	16	53	18
GGTTTCCCTGATTTCT	alt_5974_new	19	23	14	21	15	15	17	13	17	15
TAAAGATAGCCCTAGT	alt_5974_new	79	117	120	102	129	113	146	86	129	78
GGTGACGCCATGTCCC	alt_5974_new	10	12	16	15	13	6	7	4	14	6
TTATAAGGAATTCTTT	alt_5974_new	64	99	79	62	89	70	71	68	103	55
TCAGTATGTATGCATC	alt_5974_new	5	18	11	6	11	6	10	10	17	16
GGTGACGGCTACTCAG	alt_5974_new	18	34	35	16	40	24	33	22	42	21
CCGCGAGAATTTCAGA	alt_5974_new	4	16	10	14	23	11	23	12	15	13
CGATACTTCTTCAGAT	alt_5974_new	46	43	47	53	42	49	43	46	54	52
TGACAGGGGTCTACAG	alt_5974_new	43	64	74	53	70	53	71	46	79	52
GCTATGTACTGATGTT	alt_5974_new	51	85	78	57	87	64	90	55	82	58
ATGGCATCTTAATATA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
TAAATAATAAATTTTT	alt_5974_new	31	46	45	41	43	54	49	43	37	37
ATTTATGTGTTGAGCC	alt_5974_new	9	11	11	10	12	12	16	11	12	10
ACTCTTCCGTAGGATG	alt_5974_new	31	33	38	24	60	38	53	22	57	34
GAAACGTAAATGCCAA	alt_5974_new	85	131	104	95	116	76	132	107	131	85
TTCCTGACCGTAAGGA	alt_5974_new	26	23	32	18	23	26	29	26	25	19
AATAACCTTAGAACAC	alt_5974_new	0	0	0	0	0	0	0	0	0	0
GTTAAGTCCCACCTTC	alt_5974_new	23	34	29	25	50	23	38	15	48	24
ACCTTAACTTGATCAT	alt_5974_new	11	12	13	10	17	12	17	10	16	12
CTGCTGGCATTGATTC	alt_5974_new	1	1	3	4	2	3	3	2	2	1
TTTTATTAACCGGTTA	alt_5974_new	0	0	2	3	1	0	0	0	4	0
CGGCCTGTGTGATCGC	alt_5974_new	0	0	0	0	0	0	0	0	0	0
GTCTCACGGCCGACTG	alt_5974_new	66	125	82	68	142	72	127	79	154	56
CAAAAGTTTGCCTACT	alt_5974_new	8	21	11	10	18	8	17	9	16	15
TCTGGTATTAGGGGCA	alt_5974_new	25	35	37	27	37	26	35	34	41	29
AGAATTACATTACGGG	alt_5974_new	126	154	173	126	190	136	201	143	196	143
TTTGCCTTGGTTATTT	alt_5974_new	150	205	180	153	211	148	237	137	220	144
ACCTCTTGGCTTAGAC	alt_5974_new	13	18	7	6	11	17	20	10	19	7
GCGCCCAAACGGGAGG	alt_5974_new	22	29	38	35	48	33	51	33	59	50
CAGTCGGATATCCTTA	alt_5974_new	30	21	28	22	25	21	20	19	19	20
CGATGGTTTTATTCTA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
GGTCTTCTTCATATAA	alt_5974_new	19	20	17	18	16	31	22	14	26	13
GGTTCCTCTACTTTGA	alt_5974_new	0	0	0	0	0	0	0	0	0	0
TATCAGGTCTGTGCTC	alt_5974_new	35	69	42	27	81	32	95	30	79	31
TCGGGAAAGCTCCTTC	alt_5974_new	7	9	8	11	13	8	8	8	10	6
ATGGTCGATTGTCTTC	alt_5974_new	44	46	37	42	36	26	43	45	52	41
GGGGGAGAGCATCATG	alt_5974_new	0	0	0	0	0	0	0	0	0	0
CACTCGTGGTGAGCTC	alt_5974_new	0	0	0	0	0	0	0	0	0	0
TGCACTATGCGATCGG	alt_5974_new	0	0	0	0	0	0	0	0	0	0
TACGAGTGGTATTGTG	alt_5974_new	13	19	12	7	14	14	35	17	18	11
CTTCTCGTTCGGCTGT	alt_5974_new	29	20	27	21	21	14	29	8	19	22
ATTCTCAATTTGGGAA	alt_5974_new	76	61	89	67	50	59	68	58	55	59
GACACATGATGATTAG	alt_5974_new	0	0	0	0	0	0	0	0	0	0
AAGTCAAGCTGAGGAC	alt_5974_new	53	79	67	50	79	51	72	37	96	43
TTCGTTTACTGATTGG	alt_5974_new	14	15	13	12	19	11	12	10	21	12
TGCCGGGGGACGACAT	alt_5974_new	56	41	59	42	67	54	78	50	56	55
TATGTCATTATCTAGC	alt_5974_new	19	23	24	15	16	22	26	18	26	18
TTTACATGCTCTACTT	alt_5974_new	5	6	6	4	7	0	3	3	4	3
GGGAAATCAAGCGGAA	alt_5974_new	6	18	12	13	15	9	28	10	15	9
TTCAACGACCACACGG	alt_5974_new	0	0	0	0	0	0	0	0	0	0
CACTCGTCTCGCGGCT	alt_5974_new	4	10	11	9	12	5	10	6	22	7
CTAGAGCCAAGGACCG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CCTCGCCCGTTCTACA	ref_13_fdr	17	20	31	23	22	31	31	24	29	25
CTTGGTTAATTTTATG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTGTTCTGCTCTC	ref_13_fdr	11	1	7	8	5	8	6	7	3	8
CCACGCTCCGCGAATC	ref_13_fdr	136	132	145	121	138	117	138	104	148	123
TCGCGTGACAACCTCC	ref_13_fdr	39	29	43	39	14	44	24	24	35	39
TATGAGGTAAGTTATA	ref_13_fdr	111	88	113	113	70	109	108	112	73	72
ACTGTCCTATCTCGTA	ref_13_fdr	30	40	46	43	32	28	30	41	33	41
GACGTGTCTGACCATC	ref_13_fdr	19	14	23	16	19	22	21	12	21	23
TACGTATGTTCTCCTG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGATCTGCTTCGG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
ACTAATCGTATAGTCC	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCCAGAATCTGGG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
GTACGTATGGTCAATA	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
GCGGGAGTACATGCGC	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CGCGAACCCTAACTAT	ref_13_fdr	31	27	17	12	22	28	42	20	22	20
CGCAAACCTGTTGTTT	ref_13_fdr	32	64	23	21	61	27	62	30	50	28
TCGAAGGTATCCTTAT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTCCCCAGGCACC	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTACATATGAGCC	ref_13_fdr	0	0	0	0	0	0	0	4	3	0
TCGCCGCCTAGGTTGT	ref_13_fdr	30	47	48	43	49	28	36	31	61	24
AGGTCCTTCCTTACCT	ref_13_fdr	25	70	8	11	53	9	59	12	69	7
GGTCTTGATACAGATG	ref_13_fdr	21	20	24	23	28	16	23	13	24	12
TACGGCATGTTTCCTT	ref_13_fdr	5	5	3	1	0	2	0	2	1	1
AGGGTCGCGTCTCATA	ref_13_fdr	30	28	23	25	29	20	19	15	21	28
GTTTTGCCAAGAGCGT	ref_13_fdr	11	16	15	11	8	15	9	13	14	5
CAATTTCATATGCTTG	ref_13_fdr	47	34	50	42	47	35	59	37	47	39
TTCTTGCACAGCTAGT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CGTACGTATACTGTCA	ref_13_fdr	32	15	25	19	20	14	28	31	21	22
CACTGTCCCTCCGGGT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
AATCTTCACTTCTTAT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CTTACATAGGTCTTTA	ref_13_fdr	5	6	6	6	9	2	9	3	5	2
TTTACTAGCGCGCGGG	ref_13_fdr	34	34	35	28	28	31	31	34	23	32
GCAGATGCCATAGGAG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
ATATCATCTCCGATTT	ref_13_fdr	3	0	0	3	3	0	0	0	2	2
TCTTGTATCGTGTCTA	ref_13_fdr	5	6	9	10	14	9	15	9	8	6
CGCCTTATTGGTATTA	ref_13_fdr	2	3	2	6	7	1	7	3	4	2
TGCATATTAAAAGGTC	ref_13_fdr	29	17	36	18	20	22	16	20	25	10
CCCGCCGCTCAGGGGA	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
TTCATCTGACATGGGA	ref_13_fdr	10	1	3	4	2	5	4	5	2	3
GTTTACCCTGTTGCAT	ref_13_fdr	0	1	0	0	1	0	1	0	0	0
TTATATCTCTTCTTGA	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
AGACTCTGCCTGTCAC	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CAAACTTTGGTAACGT	ref_13_fdr	1	15	7	7	14	2	11	6	6	8
CCCGAGTGACCTTTCG	ref_13_fdr	46	34	37	44	41	45	37	34	32	35
AGTTACACCCATGGAC	ref_13_fdr	32	36	53	37	30	38	45	35	52	39
GATGCGATGTACGATA	ref_13_fdr	1	0	4	1	2	0	1	1	2	0
TAGCAGTTGGGCGATT	ref_13_fdr	6	4	7	3	6	4	13	5	2	3
TCTTGTTCCTTTTGAC	ref_13_fdr	20	10	23	23	22	18	24	14	16	19
ATTTTTGTATACGGGG	ref_13_fdr	8	14	12	10	14	10	17	8	11	10
GGTTTTGTGGATCGCA	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTAACGATGGCAT	ref_13_fdr	23	30	38	22	31	22	37	16	27	18
TAGGTGTAAGTTCAAG	ref_13_fdr	12	9	6	9	14	11	9	12	11	10
CTCGTTCGGACTCCTA	ref_13_fdr	0	4	1	1	6	0	1	0	3	0
TTCTGATCCCATAGCC	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
AATGTGGTGCATGTAT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
ATTTAGCATGTATCTA	ref_13_fdr	42	39	41	35	32	31	36	37	31	36
AAAAAGGCCTTGATGA	ref_13_fdr	98	73	101	86	56	98	82	87	74	74
TGAGTTTACCAGAAAG	ref_13_fdr	64	71	94	53	59	72	72	59	71	47
GCCGCGGCCAGGCTCT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
TTTATCGCTATGGTCG	ref_13_fdr	71	79	99	87	83	86	88	64	66	71
CCTGCCTCGCGTCGCG	ref_13_fdr	0	20	4	6	21	2	20	1	28	1
TAACGGTCCTGATAGC	ref_13_fdr	41	53	83	50	63	51	44	55	56	43
TCCCGATAAGGACGTT	ref_13_fdr	50	66	80	69	56	51	58	77	73	51
GCTATCACCGCTTTTA	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
TTACCAACTCGATCGG	ref_13_fdr	11	23	15	13	25	17	15	17	16	7
TATCTCGTGTAGGAGT	ref_13_fdr	10	22	25	20	22	12	25	19	30	8
GGGGTGTATATCGGCC	ref_13_fdr	94	92	107	79	84	77	95	79	101	72
GTTTGGCGCCGATCCG	ref_13_fdr	7	5	4	0	2	1	3	3	5	3
TAGAAATTTCCAAAGT	ref_13_fdr	53	44	49	36	50	47	52	45	56	45
CCTATATGCGGTGACT	ref_13_fdr	44	48	56	51	74	36	52	50	55	26
TTGGACGATAGGAGTT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CCATAGACGACCTGGG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CCAATTAGCGTTCAAT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CTATTACCGCCATTGC	ref_13_fdr	149	122	150	134	116	110	112	111	125	129
ATTTGATGTATACCGG	ref_13_fdr	2	3	4	8	2	11	6	3	3	2
CAAGGCTGTGTGTATG	ref_13_fdr	21	14	17	16	23	14	23	14	21	16
AGGGACAGGACGGTAA	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
GTTGGCCGGTAGCACG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
TAAAAGCTATTTGAGG	ref_13_fdr	7	13	17	8	6	6	13	8	13	6
GATGCGCGGTTACATC	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
GATACGCCCGTCCTAC	ref_13_fdr	29	24	28	19	35	19	30	29	30	24
CAGTCTTGGCTCCATC	ref_13_fdr	6	3	3	6	11	3	5	7	4	9
AGATGCATAATACGTC	ref_13_fdr	15	15	22	15	13	14	17	10	13	16
CTGGAAGGGCATGGTC	ref_13_fdr	2	2	5	2	2	7	1	1	1	1
TAGCGAGGTAGGACTG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
AGGCGCGCCATATCTT	ref_13_fdr	63	46	95	75	58	54	63	97	72	72
GAGATGGTTAGTAGCT	ref_13_fdr	21	20	25	20	13	21	24	15	16	16
AAATGCTGACTTTCAT	ref_13_fdr	98	102	110	95	96	120	98	109	108	99
TATCACCTGAACTTAA	ref_13_fdr	2	0	2	0	1	2	2	1	1	0
CTCGCCCGGTCTTTTT	ref_13_fdr	9	61	11	10	75	9	61	14	43	6
TACGGCATGTCTCCGT	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CGGAATCTATTGACCA	ref_13_fdr	1	0	0	1	1	0	1	0	0	0
GGCATCCCTCGTGCGG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CAGGGGGATAGGTTCG	ref_13_fdr	33	39	39	39	38	26	29	41	30	27
CTGACATTGGACGCTA	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
TAGTATGACACTCCAG	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
AGAGCTTTAATGTTCC	ref_13_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCGCTATCCCGGT	ref_13_fdr	6	7	7	4	3	7	12	6	5	4
TGCAATATTGTCTTCC	alt_5848_new	219	134	282	278	121	267	133	203	135	194
TGATGATGGTTCTTGG	alt_5848_new	93	69	95	84	73	87	86	70	68	76
TTTTATGACTGGTGAG	alt_5848_new	0	0	0	0	0	0	0	0	0	0
ACATCCTAAGTGGATA	alt_5848_new	121	88	162	143	93	128	73	143	86	123
ATATCGCCTTAATATC	alt_5848_new	54	47	59	45	28	48	43	43	46	72
CCAATGTTAATTAACC	alt_5848_new	11	11	10	8	3	7	8	13	10	12
TACTCCTCTCTAAATT	alt_5848_new	51	29	44	46	34	35	33	37	47	46
AATCCTCGTTAAACTA	alt_5848_new	62	31	79	67	28	54	36	64	49	66
TAGCTGATGACACTCC	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TCTTGAGTATGCACTA	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TCTCGGGAGATTTTGT	alt_5848_new	76	47	103	87	46	61	48	92	48	68
CTTCGAGGTAAATTTC	alt_5848_new	160	140	237	182	144	182	139	206	128	159
GCGTCTGATGACGTCC	alt_5848_new	213	121	311	277	100	181	145	209	150	201
CACTATAGGTCTGTGT	alt_5848_new	145	94	180	136	101	114	109	141	115	122
TAGCGATATTTGGTCC	alt_5848_new	190	127	241	193	112	187	115	214	120	143
CCGTGTCAATCCAGAC	alt_5848_new	14	12	19	14	14	19	4	10	6	2
TTTATCCCATTTCATC	alt_5848_new	165	67	193	205	70	160	82	149	75	147
TATGTCAACATGGTCT	alt_5848_new	117	59	138	134	59	105	70	112	72	105
TTTCCATTGCATGTAG	alt_5848_new	1	0	1	1	1	0	1	2	0	0
CATGCCATGGTTCTCC	alt_5848_new	11	20	12	20	25	11	20	10	16	11
CTTCGCTCCGATTGGG	alt_5848_new	0	0	0	0	0	0	0	0	0	0
AGTGCCTGTATATGAA	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TGCTCATTACCGATGT	alt_5848_new	131	76	158	142	61	132	73	105	64	101
ATAGTTAGATTCGTGG	alt_5848_new	24	12	29	23	13	26	19	24	15	17
GTTCCATTCGGTACTT	alt_5848_new	103	50	121	114	50	90	43	89	40	84
TATAACTTAAGAACAG	alt_5848_new	101	50	138	120	53	90	62	93	57	82
TTTGAGCGGCACGGTT	alt_5848_new	42	23	55	52	20	41	27	39	26	41
GGTCTACTTCGGCGAA	alt_5848_new	13	2	14	18	11	11	8	10	7	6
TAACCAATGCGTTCGA	alt_5848_new	59	21	63	50	27	40	36	54	18	29
AACCAGATGGAAGTTG	alt_5848_new	0	0	0	0	0	0	0	0	0	0
ATGAATTGTCACCTTC	alt_5848_new	30	16	42	34	9	22	16	23	13	22
CTGTTCCGGTCTGTAC	alt_5848_new	20	36	39	38	27	21	27	30	19	30
TACGCCCTACAGTGTT	alt_5848_new	56	39	53	49	31	37	37	63	34	34
TCGCCTATTCGGCGCG	alt_5848_new	159	102	195	169	100	132	76	151	89	138
TTCAAAAGCGAGGGGT	alt_5848_new	849	403	1080	947	443	850	455	804	435	707
TATAGAACCGTCGCCG	alt_5848_new	28	23	36	42	21	30	29	29	37	37
AGTCCGTGGTCTGGGG	alt_5848_new	0	0	0	0	0	0	0	0	0	0
AACGTATTAACATGCT	alt_5848_new	36	16	44	44	16	36	31	47	20	27
AAATGATCATGGTCTA	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TGCCACTCTATGCGTA	alt_5848_new	148	88	220	163	109	175	91	154	120	155
GACCCAGATACTTAAT	alt_5848_new	8	3	12	8	6	18	6	6	7	4
ACTGCTTTTCCGATGT	alt_5848_new	255	111	357	298	89	263	119	250	102	246
CACACGCACTCGGATG	alt_5848_new	64	28	56	91	31	75	34	52	38	56
CGCGTTTAATTAGGAG	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TAGTGTAAGGCAGCCA	alt_5848_new	39	14	20	22	9	29	3	21	5	20
TTCAGTGTGTGATTCG	alt_5848_new	6	5	8	5	12	13	8	6	4	6
GGGTGCCCTCCCTAGA	alt_5848_new	142	65	146	132	74	129	85	135	69	95
CTAATTATGTCAGATC	alt_5848_new	53	19	68	61	47	61	34	53	27	56
GCGGCAAAATATCGTC	alt_5848_new	114	71	159	110	46	98	63	106	51	88
CGAATGATTTATTACC	alt_5848_new	63	13	72	69	31	69	28	57	27	56
CCACTCGGTACTATGC	alt_5848_new	8	74	16	16	84	16	64	11	83	11
CGTTTAACCGGGATCG	alt_5848_new	20	19	18	34	19	19	10	19	18	21
GATGCACCCGTCACGG	alt_5848_new	9	7	15	18	6	8	4	15	10	10
GCCCTCTTTCGGCTCT	alt_5848_new	129	37	189	157	60	143	59	144	68	122
ATTAAAGGCTGTCGTG	alt_5848_new	0	0	0	0	0	0	0	0	0	0
CTCGCACGTCCTCAGG	alt_5848_new	81	69	125	108	47	94	64	107	73	80
TTAAATCCAGCAACCA	alt_5848_new	10	7	17	16	12	10	8	14	9	16
AGCAGAGTTAATTCAG	alt_5848_new	36	21	50	39	13	29	15	32	12	26
TTCGTTTGATCGTTTT	alt_5848_new	0	0	0	0	0	0	0	0	0	0
AGTCCGTAGCTCGATG	alt_5848_new	31	14	31	32	24	38	28	21	27	25
TTAGACCATTATCTAG	alt_5848_new	37	18	52	30	22	58	24	43	34	41
ATGGAGATACCAATCT	alt_5848_new	57	41	83	71	39	65	37	69	37	52
CGATAATAGGACGGTG	alt_5848_new	8	0	7	9	4	4	9	4	2	7
TGCACGGGTTACTGAT	alt_5848_new	53	29	37	60	22	44	38	53	34	46
ATGTAAGTATCGGTCA	alt_5848_new	51	29	79	45	15	39	20	44	22	44
AATATTCTTGTCCTAT	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TAATTCGTCTCTTTTG	alt_5848_new	291	160	344	356	158	273	186	278	161	285
TTTTTTGTTTGAAGCC	alt_5848_new	68	34	78	70	35	58	33	61	31	69
AGTGGTCGCACCCAGT	alt_5848_new	97	36	119	102	57	67	38	73	48	73
TTACTCAGGACCGGGT	alt_5848_new	90	82	102	79	104	80	115	68	96	61
CTCAGCTAAGGGCTTG	alt_5848_new	41	30	55	57	34	34	44	44	47	47
TCTTGCCAGGTTGCGC	alt_5848_new	113	80	142	91	77	85	80	119	78	79
AAGTGACCCTCCCTAT	alt_5848_new	0	0	0	0	0	0	0	0	0	0
CAGAGGGGTCGATATT	alt_5848_new	62	31	96	65	28	73	42	52	35	51
TGCGTTCTCCTCGGAC	alt_5848_new	19	14	21	21	12	19	10	9	11	19
CTTGGCCAAGTTATCT	alt_5848_new	0	0	0	0	0	0	0	0	0	0
TTATGCAGTCTCCATG	alt_5848_new	91	38	127	91	54	103	55	90	53	90
TGTACTCTTATATGCT	alt_5848_new	100	64	99	84	78	68	74	70	73	66
ACACCTGGCTGCTTAT	alt_5848_new	0	0	0	0	0	0	0	0	0	0
GACCCTATCCCCAGGT	alt_5848_new	30	14	35	37	15	25	23	37	21	23
ATTTGCTACAATCGCA	alt_5848_new	40	30	50	59	29	49	44	55	31	46
GCATTGAGATTGCTCA	alt_5848_new	59	19	63	70	25	56	33	54	36	65
ATGGTCCGTTCAAGGG	alt_5848_new	102	48	112	101	59	99	65	89	57	96
GCATAGAGCGGCTTGG	alt_5848_new	0	0	0	0	0	0	0	0	0	0
CGTAGAAGGCGATCTT	alt_5848_new	1020	445	1157	1114	537	891	457	902	556	847
CCTCTATTTCATGCGA	alt_5848_new	27	34	35	35	31	33	28	44	20	26
GTTTGTATTGACTGGG	alt_5848_new	75	53	95	100	62	63	52	47	54	73
GAATTATTGTAAACTT	alt_5848_new	17	8	23	16	10	22	12	31	20	18
TAGAATTCACTGCCCC	alt_5848_new	6	18	15	9	21	14	21	10	25	4
TGTCGAATCACCTCCG	alt_5848_new	15	20	20	15	12	18	11	14	14	11
TTGACAGGCTCGTCTA	alt_5848_new	104	69	140	115	41	102	67	113	70	98
CCTGGTGTACGGGCGT	alt_5848_new	54	35	58	68	46	57	40	53	35	50
CAACGGCGAGCGTTGC	alt_5848_new	122	48	125	108	39	82	61	93	49	81
TCGCCTAGCTTCGGTT	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
GTTCAGAATTTTTGGG	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGCGTCCTCCGTA	ref_5539_fdr	81	85	89	81	71	71	65	89	74	71
TTGTCGGCCTTCCTTG	ref_5539_fdr	61	33	70	69	39	65	30	68	18	57
CTTTTCCCGTTATTTT	ref_5539_fdr	37	44	76	65	61	61	45	60	41	43
AGAGGCTAGCGGTATA	ref_5539_fdr	1	0	0	0	0	0	0	0	0	0
AGTGGATAGCGGTATA	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TAAAGACCTCCCTCGG	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TTGCCCAGTATTTCAT	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
CTTGACGACAGTCTGT	ref_5539_fdr	5	0	3	4	6	0	0	1	3	5
GACTCCGGGTGGTGCA	ref_5539_fdr	105	57	110	109	78	83	60	74	66	90
GCACCTGCTCGAGTTG	ref_5539_fdr	100	70	133	98	60	93	61	105	62	91
AGTGGCTAGCGGTATA	ref_5539_fdr	414	331	531	490	345	390	346	427	382	395
CGCGTGGCTATCTTCA	ref_5539_fdr	91	62	140	124	68	97	80	112	71	97
ATTTTCGAAGGTTGTT	ref_5539_fdr	411	345	564	487	292	412	257	452	340	420
GCCTTGGACGGGGATG	ref_5539_fdr	18	25	34	24	21	20	16	32	29	19
TTGCTATTATATTGAT	ref_5539_fdr	50	25	51	51	44	33	29	39	34	33
GTGCGGCTTCGTCGTC	ref_5539_fdr	22	8	31	20	10	17	11	19	13	13
AATTAACGTGTTCGTA	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
GATGTTAAGTTCTGTC	ref_5539_fdr	42	17	58	34	22	33	30	28	37	27
CCTCTAGTCTGGGGTA	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
AGTTTCTACCTGTGCT	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
CGGAACATCAGGCTAG	ref_5539_fdr	139	92	173	167	72	131	100	128	107	116
ACTTTAGGACCTAAGA	ref_5539_fdr	90	64	123	81	50	103	48	103	53	95
GCTCATTAGAACATGG	ref_5539_fdr	370	183	372	408	179	335	179	326	202	339
TTCAAGGACGTTTTGA	ref_5539_fdr	24	6	33	28	17	30	20	27	17	23
CAGTACGAGGATAAGT	ref_5539_fdr	60	38	91	87	58	74	57	61	81	63
GTCTCGTCCATCTCCC	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
ACGATAAGTGGTCGGC	ref_5539_fdr	100	40	123	95	57	87	52	104	83	99
TCACTAGGGTGTCGAG	ref_5539_fdr	175	102	199	189	101	150	119	141	118	133
CCTCCCAAGATCTCGA	ref_5539_fdr	15	8	11	13	5	7	4	5	4	2
GGCGCATAGATTAGAC	ref_5539_fdr	235	142	313	243	168	217	165	200	175	214
TCCTAGTGTTCAACGC	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TGAGGGTGGTCCTGCC	ref_5539_fdr	14	7	13	25	8	17	7	12	17	18
TATATGTGGCGGGATA	ref_5539_fdr	147	89	159	142	110	134	81	131	87	102
TGAGCAAAAGGAGTAA	ref_5539_fdr	84	55	113	97	43	95	43	80	61	97
TCTCTGGAGTCGACGC	ref_5539_fdr	56	36	68	54	23	51	31	59	39	52
TAGCCTAGAGCTCTGT	ref_5539_fdr	27	20	41	22	12	25	21	25	34	25
GTTTGTGGCTGCTTTG	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGTACATCCTTAC	ref_5539_fdr	48	68	64	45	66	60	51	75	65	61
GGTTGCTTGAGGATAC	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
GATTTGTCTTCTGAAG	ref_5539_fdr	101	75	127	107	62	124	83	79	62	80
GATTTACCTGGCGCTA	ref_5539_fdr	365	236	454	441	281	373	253	359	255	309
TTCGGCGGTCCTTAGG	ref_5539_fdr	58	43	79	61	42	60	35	49	46	62
AAAATGAAAACGGGTC	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGTTGGTCATGG	ref_5539_fdr	97	53	146	99	62	112	65	105	61	100
AGTATGATTTCTCTAA	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGACGCACCGTTA	ref_5539_fdr	43	30	36	40	18	31	12	22	29	36
GTATTTGCCGTAGACC	ref_5539_fdr	31	23	33	40	14	35	26	29	23	23
TGGGACTTGGGTTATT	ref_5539_fdr	101	67	131	120	65	95	74	83	76	80
GATTCTTGACGACTCC	ref_5539_fdr	173	98	223	204	112	166	109	147	144	179
TTATGTTTCACTCCTT	ref_5539_fdr	58	61	60	55	53	53	55	28	61	40
GCTCAGACCGTGCGTC	ref_5539_fdr	58	102	61	59	100	50	94	61	100	49
ACGAGTATAAGTAGCT	ref_5539_fdr	35	17	42	52	14	25	16	44	25	35
ATTAGTTTCTTCTTAT	ref_5539_fdr	16	10	36	20	10	21	12	26	12	18
CGCCTCTCGAGAATCT	ref_5539_fdr	70	36	114	105	51	85	88	100	63	82
CGCCTGTTTCCAAATA	ref_5539_fdr	7	8	10	10	9	4	3	5	4	3
GTGCTGGGGGGAATGT	ref_5539_fdr	96	82	147	128	63	88	72	108	76	99
TATAGACTGTTGAGTA	ref_5539_fdr	55	29	59	54	32	60	38	45	48	55
CTGTTCAGTTGTCCGC	ref_5539_fdr	63	43	81	65	53	65	50	89	57	70
ATTGGAACACGTGTGC	ref_5539_fdr	36	15	42	40	20	44	29	35	32	33
CAACTTGGTAATCGAG	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TCCATTTTATTCCCGC	ref_5539_fdr	262	134	340	262	153	249	147	246	156	198
ACTAAGGCATCCCTTG	ref_5539_fdr	104	63	135	105	87	100	72	113	81	102
TCCCTTATTGAGGTTA	ref_5539_fdr	40	75	46	51	61	45	97	28	91	35
GGTTCTCAACCAGGTT	ref_5539_fdr	32	15	34	14	15	27	20	21	18	25
AGCGGATTAGGAGGCC	ref_5539_fdr	19	16	32	19	12	21	10	23	14	17
ACAGGAATGCATTTCA	ref_5539_fdr	21	22	33	39	19	34	23	26	32	35
GGTTGTTACGTAAAGG	ref_5539_fdr	45	40	77	64	41	49	36	54	44	63
GTTTCTAATCATCGCT	ref_5539_fdr	157	96	216	169	96	164	112	179	97	151
TTAAAGCAGATGCCCG	ref_5539_fdr	38	19	46	25	18	30	21	34	22	21
CGCTGATGGGTACGTA	ref_5539_fdr	8	11	10	13	7	10	7	13	7	12
GCCCCCTGCAACAGGA	ref_5539_fdr	124	73	122	132	78	105	72	101	74	114
TACTTAATTGGGTCTG	ref_5539_fdr	133	76	124	124	88	119	74	116	96	100
GACAACTTTGTCAGGA	ref_5539_fdr	13	5	21	20	6	16	3	22	3	17
TCTTCGGGAATTCAAG	ref_5539_fdr	182	105	203	175	95	145	98	164	108	154
TGTACCGCTGTGGATC	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TGTTTGGTATTGGTAA	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
GACAGGTCGGTCCAAA	ref_5539_fdr	9	3	6	4	4	3	4	5	4	10
CGCTCTTTCGTCCTTG	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
TAAGAATAACATTATT	ref_5539_fdr	133	53	134	115	72	102	66	108	56	80
TACTAACGGGCTAGAA	ref_5539_fdr	63	36	83	80	33	54	43	72	39	56
AGGTTTAATCACATTG	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
AGTCGTTTCTATGTTG	ref_5539_fdr	80	45	87	87	28	61	55	68	64	65
CCTTTTATTAAAGGGG	ref_5539_fdr	24	26	28	25	13	17	10	14	14	28
TACGAGTATAATCTCC	ref_5539_fdr	5	18	11	10	19	6	29	9	17	11
CAGCCTCGGGTAACAG	ref_5539_fdr	1	0	0	0	2	0	0	0	1	0
ATACGGTTACAATTTC	ref_5539_fdr	34	21	49	42	34	43	29	42	32	38
TTCGGAGCTTTTTTAT	ref_5539_fdr	19	12	19	15	10	13	9	17	12	12
GTCTTTGGGAAAAGGC	ref_5539_fdr	74	45	89	63	40	79	47	72	44	52
CAATTGTTGGAGCACC	ref_5539_fdr	13	9	23	14	9	13	9	12	9	16
ACAGCCGATTCCGGTG	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
ATCATTTCGTTTACGC	ref_5539_fdr	0	0	0	0	0	0	0	0	0	0
AACATCTTCCACTACC	ref_5539_fdr	23	12	35	29	16	13	22	17	11	15
TTTATGTGCACATCCG	ref_5539_fdr	30	26	34	29	21	37	32	41	30	32
GATCTCATTCTTCCCC	ref_5539_fdr	540	292	594	550	323	506	300	499	302	454
AAATATGCTGTGATTA	ref_5539_fdr	44	26	60	42	29	30	34	57	32	42
TAAGACCGACCAGCTC	ref_5539_fdr	93	54	116	105	55	68	57	79	78	87
ATAACCTCCAGTCTAC	ref_5539_fdr	37	32	37	46	34	55	51	35	34	30
CGCACCGCATTCGACA	ref_5539_fdr	28	34	39	46	25	30	31	30	34	26
TTGAGTACGAGGAGCT	ref_5539_fdr	178	93	160	154	119	153	102	165	93	152
GGATATCACCCCCTTG	ref_2615_missing	0	3	2	1	3	2	3	1	4	1
ACCTGTGCGGATGGGC	ref_2615_missing	5	6	18	7	16	8	7	6	18	7
CTCCCACCTATCTCCA	ref_2615_missing	13	25	32	26	44	24	32	23	36	19
GTCCAGGGCGATCGAT	ref_2615_missing	8	22	14	10	12	5	23	9	23	12
GGTGTGTGTAAGTTCA	ref_2615_missing	9	17	11	5	16	2	12	5	27	7
TGAGTACTTTTTTCTG	ref_2615_missing	8	7	4	3	7	11	12	3	4	9
GCATTTAAACTGTGGG	ref_2615_missing	6	23	6	7	15	10	13	5	17	6
GGGCGGCTCCAGTCGG	ref_2615_missing	22	55	21	20	33	19	34	20	40	12
CGTTACTTGAGTCCGA	ref_2615_missing	14	14	9	11	25	16	16	8	17	21
AGATCTTGTCCAGTGG	ref_2615_missing	2	13	2	5	13	5	13	5	10	3
TCCGTCTGCCCATATC	ref_2615_missing	11	22	15	7	18	13	32	15	20	8
ATTCTAACTGTTGTGC	ref_2615_missing	10	24	20	15	33	11	35	12	22	8
ACATTGATTAGCTTAC	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
TTCGTGTCACGATGGC	ref_2615_missing	12	15	28	14	22	16	18	15	22	16
AACAGTGTGTATTCTG	ref_2615_missing	3	5	6	3	10	1	8	4	10	7
CTCTGAACTTCGCTGG	ref_2615_missing	22	30	32	18	33	23	29	16	48	24
GATGTCTGCCCGCACG	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
TTGAACATGAGAAACT	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
CGGGTCTTAAGTACCG	ref_2615_missing	50	234	60	52	304	54	288	49	271	46
TCCGTGCCGAACCGGT	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
TTGATGGATAGCTAGA	ref_2615_missing	73	98	102	74	153	78	146	81	144	62
GTTCAAGGCTTTTTCA	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
GCGAGGCGCTACCACT	ref_2615_missing	13	17	8	6	22	7	7	4	8	5
CTGCTGTGGTCTAATA	ref_2615_missing	29	67	35	28	50	31	80	32	67	30
GGATCTGCCACCGGGA	ref_2615_missing	29	47	36	48	50	25	56	41	60	21
GAGTTACCCAGGTTAC	ref_2615_missing	12	24	23	10	22	11	41	16	33	11
TGAGTCCGGGCATTTC	ref_2615_missing	17	13	6	3	9	7	17	4	14	5
CTAGGTGTCGGTGCCG	ref_2615_missing	12	10	7	3	9	2	7	5	7	4
CTGCTGAATCGGGTGT	ref_2615_missing	31	68	45	30	59	50	68	30	87	26
ACGCAGAGTTTCCTAT	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
TTTATATGTCATTTAG	ref_2615_missing	21	36	24	16	31	10	28	12	32	14
CAACTTTCATATACCA	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
GAGAATTGCTTATTTT	ref_2615_missing	10	29	15	18	31	15	43	17	36	23
AAACCTGTTCAGGCTG	ref_2615_missing	13	16	11	16	15	8	26	9	20	7
ACCTCATTGCTGGCTC	ref_2615_missing	24	29	28	28	36	19	39	23	54	22
TTGGCCACGGTGCAAG	ref_2615_missing	23	52	26	19	66	17	51	27	54	17
TTGATTAGCTTCGTAT	ref_2615_missing	8	28	11	8	10	11	13	15	13	10
CGGTGTTTCTACGCTC	ref_2615_missing	19	39	31	12	37	20	42	28	39	16
TATTAGCTGATGCTTG	ref_2615_missing	7	21	6	6	15	6	22	8	17	11
CCGAAATACCACACCA	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
CTAGTTCAGCTGCCTC	ref_2615_missing	17	35	28	17	47	18	55	23	43	26
TGACAGGCGAGGTGGT	ref_2615_missing	23	41	21	24	50	27	50	26	47	30
ATCCTAAGAGTCAAAG	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
GACCTGATTACGTAAT	ref_2615_missing	33	60	33	35	58	21	41	39	48	30
TTTATAATTGGCCATT	ref_2615_missing	23	30	30	19	28	26	34	17	25	15
GGCCTTGATTCATCCC	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
TTTGGTATCTCGCGCT	ref_2615_missing	67	128	75	70	128	58	128	54	158	66
ATGCGTATTCGTTCGA	ref_2615_missing	4	14	5	2	11	8	7	3	9	3
CTGAGCATAAAGTACT	ref_2615_missing	19	18	18	18	28	9	23	20	24	11
TTGCGTGTTTGCTCGC	ref_2615_missing	4	14	9	7	11	11	11	12	17	3
GCATCGTTTATCTGTT	ref_2615_missing	79	125	106	72	130	94	129	63	143	58
TACATGGTTAGATTTT	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
CTGCTTGAACAGTGCT	ref_2615_missing	8	11	3	11	13	5	19	1	15	6
CAATTGAATTACCTAA	ref_2615_missing	17	29	15	22	33	16	19	20	43	24
TCCAGCTATACCCTTC	ref_2615_missing	13	28	11	11	29	11	25	9	25	9
TTTAGTTGCTAGGTCC	ref_2615_missing	6	13	20	13	33	13	16	7	20	17
GTTTGAGTTGCTTCCC	ref_2615_missing	20	33	29	19	23	19	28	18	39	22
TTGTCTAGTTTTGTCT	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
GTAAAGTCCGCACTTG	ref_2615_missing	4	16	8	5	19	10	26	13	25	6
GCTCTTAACCGAGGCG	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
GCTCCAACCATGCTTT	ref_2615_missing	55	104	59	63	126	54	106	67	105	53
ATTGAAGCCGAACCGG	ref_2615_missing	7	16	14	9	17	15	18	11	26	8
TGTGTATGGGTTTCGG	ref_2615_missing	41	53	39	34	45	40	71	30	60	22
AGACTATTCCTACACT	ref_2615_missing	12	26	23	20	36	16	29	12	51	13
GCTAGCTGGTTACATG	ref_2615_missing	16	11	19	9	20	8	10	3	21	9
ACTTCGGACTTTTAAC	ref_2615_missing	8	8	9	5	11	3	14	5	13	5
CGGTTATAGGGAGATT	ref_2615_missing	0	0	0	0	0	0	0	0	0	0
TGACCTATCCGTCATT	ref_2615_missing	9	18	11	6	19	6	35	8	12	8
CCCCATGCAGTACTAC	ref_3539_missing	16	36	31	18	29	12	38	16	41	13
GGGGCCTCGGTACTAA	ref_3539_missing	0	0	0	0	0	0	0	0	0	0
ACTTGGCCCGAGCTCT	ref_3539_missing	23	31	20	18	28	16	39	14	49	18
TGCGGCCGATGTTTAT	ref_3539_missing	8	9	10	10	15	14	8	11	8	5
TTAGCATCGATTTGGC	ref_3539_missing	94	112	81	71	117	53	107	74	145	88
TAAGTTGATGTCCCAG	ref_3539_missing	0	0	0	0	0	0	0	0	0	0
ACCCTCACAGGTTAGT	ref_3539_missing	26	59	42	42	53	36	63	30	79	33
GCTTTGATTCTCGTTC	ref_3539_missing	29	52	34	38	48	42	45	24	66	38
TTTTTCGCCTTGTTCT	ref_3539_missing	0	2	4	2	0	1	2	3	6	0
CGGCGCGGGGAAATCT	ref_3539_missing	50	70	59	47	51	42	69	50	87	37
GCCCTATTGTATTATA	ref_3539_missing	0	0	0	0	0	0	0	0	0	0
AGGAGTGTATCCGTGT	ref_3539_missing	0	0	0	0	0	0	0	0	0	0
CTTCTCATCTAATACC	ref_3539_missing	1	2	3	3	1	0	8	0	2	1
GCCTCAACAATCGGTT	ref_3539_missing	9	10	13	9	22	11	24	9	18	5
GGACCTCATGTTGACC	ref_3539_missing	5	8	12	6	12	6	11	13	8	10
GGGCATCTGTTTGCCT	ref_3539_missing	3	11	0	2	6	4	1	6	7	1
ACCGTCCATTCACTCT	ref_3539_missing	22	31	23	21	44	25	43	20	48	14
ATTCCGCTTTTGTTGC	ref_3539_missing	0	0	0	0	0	0	0	0	0	0
TTCCCCGGGCGTAAGC	ref_3539_missing	8	18	4	7	22	4	16	5	14	7
TAGCACCCCTGTATCC	ref_3539_missing	0	0	0	0	0	0	0	0	0	0
CTGCCATCAAGGTGCC	ref_3539_missing	5	28	10	9	22	5	9	8	25	13
CTGCTTTCTTGTAAAC	ref_3539_missing	7	11	9	10	5	8	11	6	8	1
CATATGCATCACCTTG	ref_3539_missing	0	0	0	0	0	0	0	0	0	0
GAGTGTTGTGAGTTGA	ref_3539_missing	6	11	8	6	13	4	7	4	5	4
CATCAATCGGGAGCGG	ref_3539_missing	7	10	4	9	14	13	4	4	16	6
TTGTTCGTCTTTTGTA	ref_3539_missing	15	15	24	7	20	5	14	8	23	12
GGATTAGTGCGGAGAC	ref_3539_missing	11	21	7	12	20	8	19	8	22	15
TCTCGGGTTCAAGGAA	ref_3539_missing	9	15	14	10	13	13	8	6	7	16
GTACAATGAAATTCCC	ref_3539_missing	9	12	5	7	15	5	11	3	14	10
TGCTAAGTTTTGGATG	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
GCTTTAAGGTTCATCA	ref_1720_RC	72	81	99	68	73	69	92	68	96	69
GAAAAACAAATTATGT	ref_1720_RC	45	37	60	50	36	38	50	48	45	27
GTACACTTCCGCCTTA	ref_1720_RC	37	81	16	25	94	23	100	16	91	17
ACCCTCGCGCAAGATT	ref_1720_RC	92	93	124	89	70	92	76	94	92	61
GGATAATAGTGTACAC	ref_1720_RC	22	15	22	17	16	12	22	19	16	12
CTCCTGGATTAGCTAA	ref_1720_RC	82	93	111	70	101	71	118	86	107	88
ATACTCCCTAACGTCG	ref_1720_RC	21	65	25	22	58	17	74	11	77	15
TATATTTAATAAACTG	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
TATACGACGCAATGTT	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
GCGGGAGAGCTTCCAG	ref_1720_RC	17	22	20	18	26	24	21	34	24	8
TACGTGGTCAAAGTTC	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
CTCGATCGTTTCCAAC	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
TGGATCTGTATCAAGA	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
TAATCCTGTCTTGATC	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
GGCATACTGCTCCATA	ref_1720_RC	23	50	44	25	45	35	29	33	50	29
GATGCTGCGCGAGTCC	ref_1720_RC	60	65	55	63	57	56	69	59	76	55
CGTGGGAGTGAACACC	ref_1720_RC	11	19	26	22	13	12	23	19	17	16
TAGGACGTCGTTAATT	ref_1720_RC	145	188	206	149	182	188	205	145	187	157
ATCGTTTAGCACCAAG	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
TTGTGGTTGTCGAATT	ref_1720_RC	71	108	98	86	90	85	101	81	73	72
AAGGCCGAAGATAGAA	ref_1720_RC	11	16	18	14	21	13	22	6	22	7
ACTCAAGGAGGTCAGG	ref_1720_RC	22	36	41	38	45	22	42	25	33	23
ATAAGTTAACCTGCAC	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
CCCTGGGTATGGATTT	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
CGTGCATGAAGGCGTT	ref_1720_RC	56	68	81	67	80	60	86	57	65	51
TTGGTTTAGCGTTAAA	ref_1720_RC	99	106	109	104	71	97	119	89	96	58
CGCCGCGGGAAGGTGC	ref_1720_RC	10	32	40	30	35	19	57	23	29	29
TACATGCAGTGTTTTC	ref_1720_RC	29	28	40	32	36	33	34	38	31	38
CTCGAGAATTGTTCCC	ref_1720_RC	49	51	87	53	67	38	59	45	54	50
TTAGCCAATCCGCTTC	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
CGACAAAACTCGATCT	ref_1720_RC	70	65	73	65	64	61	61	66	55	46
GCATTCTGTTTCCGGA	ref_1720_RC	30	35	33	29	32	19	37	27	28	24
TACAATTTTTCGGCCC	ref_1720_RC	119	129	119	115	93	122	112	104	121	99
CAACACGAACTTTGGT	ref_1720_RC	9	5	5	6	10	9	5	7	3	3
TGTCAACTTTACGATT	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
GTGTGATCCCGTAAAC	ref_1720_RC	52	81	76	47	68	65	68	66	86	62
TCATAAGAAAGGACTT	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
GATTACTCATTTTGTG	ref_1720_RC	44	52	60	44	51	33	43	33	53	44
CCAATGTTTGATGGCA	ref_1720_RC	101	91	134	87	119	93	122	81	126	88
GACAAATCAGAGGGCG	ref_1720_RC	8	7	7	14	18	11	7	9	13	11
TTATATACACTCAGAT	ref_1720_RC	0	0	0	0	0	0	0	0	0	0
GGCTTCTTGTATGGTT	ref_1720_RC	63	42	64	38	42	44	61	37	52	40
TGCTTGGTTATCACGA	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTGGATATGTGAG	alt_4372_fdr	12	9	20	11	28	25	12	9	18	11
GCCTTGTGGTGGCCGT	alt_4372_fdr	29	31	24	9	28	14	27	20	31	24
ACACAAGGTGTCCCAG	alt_4372_fdr	22	14	22	18	24	19	18	15	23	10
TTCGACTTCAAATGTA	alt_4372_fdr	14	3	4	3	5	4	11	0	3	4
CTCACAAAAGGTATGA	alt_4372_fdr	26	47	37	27	50	19	57	16	56	31
TTTGATTTTTGACTGC	alt_4372_fdr	74	59	69	52	58	62	49	57	57	49
CTTCGAAAGGTATTAT	alt_4372_fdr	111	130	136	103	155	86	127	111	138	89
GAAGTTTGTCCAGTCT	alt_4372_fdr	26	23	20	21	19	24	26	20	22	17
AGCGGTTTCCTCTTGC	alt_4372_fdr	18	9	9	6	18	4	3	15	10	11
GCCCTGTCAGAAACAA	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
AACCTGCTCCTCGTCA	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
CTCTAATAAAGTAAAC	alt_4372_fdr	1	8	5	5	0	4	3	3	1	1
CTATCATGTTTTTCGT	alt_4372_fdr	28	28	42	23	25	26	35	20	31	27
CCACTATCTGATTGCG	alt_4372_fdr	61	44	41	25	44	35	35	35	53	28
CCATTTGTATACTAAC	alt_4372_fdr	19	22	20	11	16	14	19	14	23	14
TAATACGGCACCGACT	alt_4372_fdr	79	45	87	58	68	67	71	79	61	62
TCGCATGTTCGGTAAC	alt_4372_fdr	8	16	11	13	16	8	23	11	24	20
GACCGTTCCTCAGTCC	alt_4372_fdr	67	35	72	58	54	65	44	49	51	57
CCGGTACCGGTTCTAT	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTGAAACGTTCCC	alt_4372_fdr	112	62	101	86	63	74	81	58	82	75
GGCCTTGTTATTCGTT	alt_4372_fdr	39	24	30	28	28	45	25	22	27	34
TCCCTCTCCAACCTGG	alt_4372_fdr	48	51	55	31	34	53	39	41	41	39
TATTACATCCCGAATT	alt_4372_fdr	81	47	82	60	52	51	69	56	72	67
GTAGGCGCGTGCTCAC	alt_4372_fdr	20	14	11	13	10	12	24	9	7	17
GAGTCGCGGCCTATGT	alt_4372_fdr	12	11	23	6	13	21	19	14	6	10
TTTTGGGCACTTTTCC	alt_4372_fdr	17	21	24	8	12	13	21	6	11	15
TCCAATGAAGCGCGTG	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
GGGTACTGGTGTTGTT	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTCATTTCAAAGT	alt_4372_fdr	7	5	5	2	3	7	4	5	10	9
TCACAGGAAGGGGTAC	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
TAGGTTTCGCCCCCCC	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
CACTCTTTGCCGGTTT	alt_4372_fdr	37	37	38	26	33	20	44	25	29	23
TTTCTAGTTACTTCTT	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
TTGGTAAGGCCTCGGC	alt_4372_fdr	9	10	10	6	5	15	15	9	5	12
ATGTTATCGCTAAAGT	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
CTGGAGCAACTCCTCA	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
TGTCGGCTCTCGTCCA	alt_4372_fdr	33	27	26	23	16	25	12	17	18	16
TCCAGTGCACCTCTTG	alt_4372_fdr	2	6	3	8	19	5	11	9	6	5
GGATGGCAACGGGTGC	alt_4372_fdr	22	19	25	26	28	22	18	16	22	27
AGCGTAGGCAAGTTGC	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGGATACCACTGT	alt_4372_fdr	9	6	10	15	11	6	9	13	7	8
GTAAGTTGCCTTGCGA	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
AACAAGGGTAGTCAGG	alt_4372_fdr	14	11	18	12	6	15	14	6	11	20
GTTTCAACCCCGTAGC	alt_4372_fdr	31	29	38	32	29	43	36	38	37	35
GCGCAGAATTATGTAG	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGGTGGCCGCTTA	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
GGGATTCTGCGGGGCA	alt_4372_fdr	10	3	10	4	11	9	15	6	9	8
GCGTGTTTCATGGCCC	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
AATATAAAAATTAATT	alt_4372_fdr	9	20	6	4	14	8	18	6	22	11
AACCATCTCCATGTGT	alt_4372_fdr	9	12	14	10	13	10	18	17	13	7
GTAAGTTCGTCCCGTG	alt_4372_fdr	22	18	16	15	10	13	10	16	13	13
AGATTGTGGGCAGCAA	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
TCCGCTTATCGGGAGT	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
GAAGGCAGATTTTTTA	alt_4372_fdr	23	32	42	26	29	21	18	21	16	30
TAATCCTAAGTCAATC	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCGTATAGCCTTG	alt_4372_fdr	57	39	69	59	46	49	57	34	56	51
CCCCGGAGGTCTGGCT	alt_4372_fdr	4	6	4	3	5	11	4	10	4	4
CTTCGAAAGGTATTAC	alt_4372_fdr	0	0	0	0	0	0	0	0	0	0
CGAGCAGAACCGAGGT	alt_4372_fdr	26	16	14	11	11	22	15	20	15	7
TCCCATTTTCACTTAT	alt_4372_fdr	36	36	53	30	45	33	37	35	50	42
AAAGGATTGTCTCCCT	alt_4372_fdr	16	9	27	14	20	9	9	19	21	16
GCGCGACAGCTCGTGT	ref_5631_new	0	0	0	0	0	0	0	0	0	0
GAGTCATACTCCTATC	ref_5631_new	3	14	6	11	11	5	9	4	11	8
TTCGAGTAACGACAAT	ref_5631_new	0	0	0	0	0	0	0	0	0	0
GAGCTTAGAGAAACTT	ref_5631_new	26	21	26	12	19	26	6	26	15	21
TAGTCTTATCCGCCGT	ref_5631_new	57	46	71	81	42	52	62	51	55	64
GGTCAAGTTTCGTTTC	ref_5631_new	98	72	80	89	55	55	48	79	41	84
CTCGGGAAGCATATCG	ref_5631_new	70	36	70	60	39	67	54	42	56	39
TCAATATAAAGCATAT	ref_5631_new	38	34	51	42	19	44	37	45	28	26
ATTATTTCAGGGGACC	ref_5631_new	12	8	15	14	12	9	11	9	10	14
TTAGCGAGTATCGGAG	ref_5631_new	0	0	0	0	0	0	0	0	0	0
GGTCAACGCGAGCCTC	ref_5631_new	0	0	0	0	0	0	0	0	0	0
ATTGTTGTTCCGCCAC	ref_5631_new	51	24	67	60	36	56	35	54	48	37
TACCATAAGGCTGACC	ref_5631_new	185	123	242	214	133	150	138	164	128	146
AACCGCCGACTATATA	ref_5631_new	15	11	13	23	7	9	12	13	10	13
CCCACGACGTTAACCT	ref_5631_new	49	36	40	49	29	39	33	44	32	36
CGTGCATACCATTTGA	ref_5631_new	35	28	41	29	39	35	30	34	41	34
GGCACCAGTTGTCATC	ref_5631_new	61	58	82	64	46	63	46	58	39	56
AATCTGCTTCGATTAT	ref_5631_new	3	2	7	4	0	4	6	2	3	5
CGGTCCTCGTGTCTAC	ref_5631_new	42	46	40	26	58	38	49	25	50	31
TAGTGAACCAGATTGA	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TGGCCGAGGTTTACCC	ref_5631_new	13	14	15	14	13	19	18	16	25	26
TGATGGGGTCCGGGGA	ref_5631_new	29	13	24	23	15	20	17	16	11	21
CTCTTGCTCGAGAACA	ref_5631_new	538	405	650	540	413	521	419	524	422	502
CTGGTATCTGTTCTAT	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TAACACGGCAACTTAA	ref_5631_new	83	70	91	86	62	105	81	87	68	85
ATTGGCACGATTATTG	ref_5631_new	96	66	107	97	62	75	68	83	77	81
CTTCCGAAACGCGGTG	ref_5631_new	85	56	79	62	53	58	59	54	91	66
GTCAGAATCTGCGATG	ref_5631_new	64	38	70	51	42	57	31	59	32	39
GCCGCGTCATCAGTCA	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TTTGGTTCACGCATTT	ref_5631_new	70	71	101	74	58	74	55	70	66	76
GGTGCTCTGTTCCAAA	ref_5631_new	45	35	46	53	27	53	28	61	43	60
TTTGTGGGGACGTACG	ref_5631_new	434	336	552	459	336	455	344	446	369	380
CTACGCTATTATCAAA	ref_5631_new	41	16	55	34	20	37	28	45	30	33
CAGGGTGCTTTGCCGC	ref_5631_new	44	32	55	50	20	27	33	48	29	39
CTACGTCGGCTCGCCT	ref_5631_new	20	22	42	36	17	22	22	20	31	20
CTGTGTGGTAAGCTAC	ref_5631_new	0	0	0	0	0	0	0	0	0	0
GCAAAGTTCCAGGACC	ref_5631_new	0	0	0	0	0	0	0	0	0	0
GTTGTTCGGGAGTCCA	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TCGACGATACTCCTAC	ref_5631_new	63	45	69	59	35	50	35	41	31	42
CGGCCCACTAAGACGG	ref_5631_new	10	19	25	23	15	13	10	15	16	20
ACCAGCCGCACTTTCG	ref_5631_new	29	95	47	38	94	40	99	34	109	33
TTTTTTCGTTGGCATA	ref_5631_new	3	7	10	13	4	7	3	1	2	6
CATTTTCTTAGCTATT	ref_5631_new	0	0	0	0	0	0	0	0	0	0
ATCTGCTGTGTAGAGA	ref_5631_new	0	0	0	0	0	0	0	0	0	0
GGCATCTGTGAATTAC	ref_5631_new	116	82	156	110	99	120	83	86	90	99
CTGTCCGTCCTAACAC	ref_5631_new	11	13	19	15	13	16	8	15	15	15
TCAGTTTCCAGTCTAC	ref_5631_new	67	40	51	74	35	38	42	52	44	37
TCTTCTACCGCTTGAT	ref_5631_new	0	0	0	0	0	0	0	0	0	0
ATCTTTTTGTGGAAGC	ref_5631_new	0	0	0	0	0	0	0	0	0	0
GCTGGTATGTCCCCCG	ref_5631_new	22	13	17	21	22	22	12	23	21	13
TGGAGGCAGTGAAGTT	ref_5631_new	49	24	50	42	42	39	40	38	38	37
AGGTGATCTAGAACTA	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TGGTGATCTAGAACTA	ref_5631_new	375	288	472	430	300	333	310	384	341	360
TGGTGATATAGAACTA	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TGGGCGACACTTTTTT	ref_5631_new	43	20	50	52	23	33	30	41	35	41
CTGGATACGCATTATG	ref_5631_new	35	22	50	32	32	31	21	21	25	29
GTTCGCGTAACTCCCG	ref_5631_new	18	14	14	16	19	11	17	18	15	11
TATCCCAGTCATCGGT	ref_5631_new	73	65	59	58	61	40	50	57	53	52
TTTCAAGCGTGGTGAT	ref_5631_new	33	20	38	31	19	25	18	18	27	15
TTCTGCTTCCTTCTTA	ref_5631_new	27	23	25	27	16	19	30	16	32	23
AATTAGATACGCTGTA	ref_5631_new	23	7	21	5	13	12	13	12	5	9
CACCCCCTGCCATTAG	ref_5631_new	5	5	10	6	6	9	8	6	9	10
GTTGAACGACATCGGC	ref_5631_new	75	64	88	81	69	73	43	72	67	72
CGTCTTGCCTTCGCTT	ref_5631_new	130	77	126	131	73	126	91	124	103	115
GCGTTGTGAAGTTAAG	ref_5631_new	0	0	0	0	0	0	0	0	0	0
CTTTATTTAGACTCTC	ref_5631_new	22	20	21	27	15	16	21	18	8	17
CGCGTCCTCAATTTGT	ref_5631_new	153	102	197	167	101	129	126	168	117	162
CTGCCCGTTGCGGTGC	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TGCCGGAGTCACGGGA	ref_5631_new	10	7	5	8	4	21	2	6	3	15
GTCAAGGTTTCGTAAG	ref_5631_new	4	3	5	5	0	3	6	5	2	1
ATTCGTAACGTCAGTT	ref_5631_new	0	1	0	1	0	0	0	0	0	1
GGAACATGTGTCCCAA	ref_5631_new	16	21	31	20	17	17	20	18	9	25
TTAGCTTATTGCCCCA	ref_5631_new	154	93	154	125	80	113	95	94	85	124
AAACCGCGTGGCCGCG	ref_5631_new	27	7	28	24	13	21	15	30	12	24
CAAAACCACATTCTTA	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TTAATTTTGTACGGCA	ref_5631_new	71	50	86	56	53	65	24	60	40	69
CTCTATCTACCTTTCG	ref_5631_new	56	66	83	76	65	59	66	64	79	46
AATGTCCTGTAATCTG	ref_5631_new	73	88	119	83	87	110	76	91	73	68
TTCCTCCAGGTATCTT	ref_5631_new	63	38	65	58	39	48	38	56	56	50
TCGTGATGGATTTTGT	ref_5631_new	0	0	0	0	0	0	0	0	0	0
TCAGCGCCAGGCTGTA	alt_587_missing	7	12	6	4	14	7	12	6	14	4
TGAACTGCTAGTCGGT	alt_587_missing	17	70	21	26	69	21	68	28	59	37
CAGTTTTCCTAACGCG	alt_587_missing	6	12	5	5	8	4	9	5	16	8
CCTTTTGTCATGTCCC	alt_587_missing	0	0	0	0	0	0	0	0	0	0
TGGTGTTTTAGCTGTG	alt_587_missing	0	0	0	0	0	0	0	0	0	0
TTAGCTGTTCTATTTG	alt_587_missing	9	44	12	15	21	8	27	6	31	13
TTTGAATAATGAAGCA	alt_587_missing	12	10	11	2	21	7	17	8	17	13
CATTTTTGCTTTCCTG	alt_587_missing	19	23	23	25	29	22	22	21	39	15
TATGTAATGTGTCCAA	alt_587_missing	3	0	1	6	2	1	1	2	1	2
CTCTATTCTTCCATAC	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CATTCATATGCTGTGT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
TTCGGCCAGATAAGTG	alt_587_missing	1	1	0	0	2	1	1	1	1	1
CGCGCTGCTATCGGCC	alt_587_missing	0	0	0	0	0	0	0	0	0	0
TAACGAGGTACTTTTA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
ACTTGGACATCTTGCG	alt_587_missing	9	5	1	12	4	10	11	6	11	4
TCTTGTGCTCCTCGAT	alt_587_missing	31	68	32	28	33	35	59	30	48	40
GTATACTCACCACGAT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CAATTTAAGATTTCGT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CAACTGTCATGTAGAT	alt_587_missing	9	20	6	8	13	12	12	6	20	9
TAAAATGCTGAACAGT	alt_587_missing	6	9	5	3	10	7	11	2	14	6
GCTATGGGTGCTTTGC	alt_587_missing	50	68	55	35	79	48	69	41	82	42
TGTTGAAAACTGAGTG	alt_587_missing	22	41	37	30	52	23	57	38	50	26
CTTGTAGCTCATATTG	ref_587_missing	52	115	69	80	126	46	135	61	117	58
TCAGATCGAGTAACGA	alt_587_missing	22	27	17	29	37	23	39	18	44	20
AGAGCGTACCGACATA	alt_587_missing	2	10	1	2	11	9	4	4	8	4
CAGTAGCGACGGACTG	alt_587_missing	14	14	12	16	16	11	16	7	26	14
CTTGCTAGGTTGTGGT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
AAAATCCGGGCAACAA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CCTCATCTGGCTGGAT	alt_587_missing	7	23	10	16	18	8	22	6	24	10
AGTCTGTAATCAGAGT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
ACACAACTCTTATCAA	alt_587_missing	1	6	6	3	7	4	8	4	10	3
CCCGCTATTTGTACGT	alt_587_missing	0	1	2	0	2	0	1	0	1	1
GTTCAACTCATGCGTA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
GTCTGAATGGACTAAG	alt_587_missing	9	12	11	14	19	16	19	8	14	10
CATTTCCGTCGAAATA	alt_587_missing	18	41	25	15	41	22	30	17	41	21
TTTATAATTCTTGCTT	alt_587_missing	25	42	27	20	60	33	51	21	46	28
CATAATGACGGTACCA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CCTTCCGGTCTCCGGT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCCACGGCATGT	alt_587_missing	21	33	19	17	28	29	22	12	25	23
TTTACAACGTCTCGTG	alt_587_missing	2	5	11	3	6	5	14	3	8	4
CAAATTCGGGGGCAAG	alt_587_missing	9	12	9	8	9	6	11	4	9	6
GGTGATAGCTTTTCGC	alt_587_missing	2	8	7	3	11	0	8	2	6	2
GAGTAAGGAGGTAGAT	alt_587_missing	24	42	33	31	37	40	43	24	57	25
TCGTAGGTTAATATTT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CGTTCTGCGGTAGCAA	ref_587_missing	5	21	8	5	8	6	9	5	14	9
TAAATGCACAGTACAA	alt_587_missing	7	12	5	9	20	17	16	13	19	5
GCCCTTTTAGTCTAGG	alt_587_missing	28	55	28	27	65	24	54	24	54	24
ATGTGAGCACTAGGCT	alt_587_missing	35	91	51	49	72	40	109	34	100	41
ATGTGTCATAGATTCC	alt_587_missing	2	2	2	1	0	1	0	2	4	0
ATGAACAAAGTTAGCA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CCCATGGTATGGTCGT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
AGTGCTGATGAACACA	alt_587_missing	8	17	6	13	15	14	13	4	9	11
CTCGATCGTTTCAATA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
AACATTCATAGTCTCT	alt_587_missing	1	3	3	2	2	3	4	3	6	0
CTAAGGGTGATCTGGT	alt_587_missing	13	16	12	11	17	10	18	9	19	10
GCTGACGATTCGAGAG	alt_587_missing	7	14	9	8	8	15	19	18	16	11
CACAATTCAGTCTCCG	alt_587_missing	6	7	6	5	11	4	15	4	11	6
TTCGAGACGTGGCTGC	alt_587_missing	14	37	17	12	23	10	37	11	22	7
TTTTCCGGACGTTCAC	alt_587_missing	0	0	0	0	0	0	0	0	0	0
GTTTTTTGCGGTTCTT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
ACTTAATCTCGTGAAT	alt_587_missing	19	33	25	16	30	20	37	15	25	11
TGTCCCGTTTACTATA	alt_587_missing	14	37	34	23	38	18	48	18	50	19
TCGTCAAAACCCTCGT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
ACAAGCCATGTATTTC	alt_587_missing	19	72	34	24	74	19	64	14	71	18
CGTCACAATATAGCTT	alt_587_missing	16	31	22	17	18	23	36	18	37	21
GAACGTTCGCCTTGTA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
GCTTAGCTGGCGTGAC	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CTACCTCCTTTTGAGT	alt_587_missing	4	4	2	4	5	2	8	1	5	1
CCTTAGTCCTTAGCTG	alt_587_missing	8	14	5	13	25	8	23	4	16	7
CCCGGATGGATGTGTC	alt_587_missing	12	29	16	11	24	10	29	13	23	17
CCAAGATTTCCTTTCA	alt_587_missing	17	32	15	20	27	14	27	10	27	10
TACCTATCAGCGAGGC	alt_587_missing	0	0	0	0	0	0	0	0	0	0
CGAGGCTAAAGAGACA	alt_587_missing	10	23	13	8	19	8	25	5	23	4
TATCTTGATAGGTGAT	alt_587_missing	5	13	14	11	17	4	22	8	21	7
TCGGCACACGAGCCCA	alt_587_missing	7	8	12	5	11	5	12	5	14	4
AGCGGCCGCGAAGCAC	alt_587_missing	62	90	89	66	88	54	72	45	90	64
GCTTCCCAAAATATAA	alt_587_missing	10	8	6	4	11	9	11	5	9	8
CCGGTCCCCCCACTCG	alt_587_missing	1	2	0	0	3	0	4	0	4	0
TGGCGATCATGGACAC	alt_587_missing	14	32	24	14	27	14	27	10	26	20
GGGCGCCATAATCACT	alt_587_missing	0	0	0	0	0	0	0	0	0	0
TTGATAATAACAAACG	alt_587_missing	17	11	18	4	6	8	15	7	11	3
CGATAGAAGCCCTATG	alt_587_missing	8	21	14	15	19	20	18	8	25	12
ACTAACCTTATTACCA	alt_587_missing	13	27	5	8	32	6	35	7	29	4
GGGATGGGATCACTTG	alt_587_missing	29	55	36	45	70	41	64	34	72	25
GTACATGACGTCAGAA	alt_587_missing	0	0	0	0	0	0	0	0	0	0
TCAGTGGATCGTAGGG	alt_587_missing	0	0	0	0	0	0	0	0	0	0
AGCTGCCACTCCTACT	alt_587_missing	12	55	27	29	60	17	43	22	47	24
CTCCTTGTTCGAGAGA	alt_587_missing	7	8	5	3	7	4	12	2	11	2
GGTGTTTACTACTGAA	alt_959_upstream	3	3	6	11	4	2	7	1	7	2
CTCTTGGCGGAGGTTT	alt_959_upstream	51	111	83	63	102	57	127	67	108	64
TTATTGGCATCGAGCC	alt_959_upstream	26	25	35	17	17	21	27	22	29	15
ACCCGTAAAAAAACAA	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
CCATCGTCGTTAGTTT	alt_959_upstream	114	76	109	78	122	90	120	96	118	93
CCTTTCATAGTGCTGT	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
ATTCATTATGCGGATA	alt_959_upstream	2	5	8	4	4	2	5	6	6	1
TACCGGTACACCCTTA	alt_959_upstream	32	59	31	34	47	26	47	31	50	32
GCTACGGGGCACATCG	alt_959_upstream	21	39	19	24	38	37	30	22	29	20
CGTTCTTACGTAAGTG	alt_959_upstream	70	76	71	61	70	60	70	79	63	63
GCGGACCCATTTTCGT	alt_959_upstream	15	24	32	23	29	15	17	17	26	24
CCCGACATACTTGCTT	alt_959_upstream	42	53	47	49	74	33	53	32	44	35
GGGTACTCCCTTGAGT	alt_959_upstream	13	28	13	13	34	7	27	7	30	8
TTCTCTGTGTTTTCCG	alt_959_upstream	15	7	15	6	19	12	14	14	12	17
ACCTCCGGAGTATGAA	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGTGCACCCGGCC	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
TCCCCCCCTTAGTCTA	alt_959_upstream	56	53	48	45	43	43	59	43	54	33
GGTCACCGGTACGGAG	alt_959_upstream	30	45	35	41	29	22	45	25	29	20
GTTCTGGGAAGATCGA	alt_959_upstream	108	116	132	115	124	134	133	93	129	108
GGTAAATGGTTCCGAC	alt_959_upstream	11	14	7	10	11	7	14	8	11	5
ACCTCCTTTGTACTTC	alt_959_upstream	23	22	21	29	26	17	24	30	32	23
TACTCCTTTCGCCCTG	alt_959_upstream	53	91	61	61	74	53	70	50	80	50
TCCCAGATTGTCTGAA	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
CGAATCTAGATATGAG	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
GAGCAACGTCCTGATT	alt_959_upstream	7	4	10	13	8	7	14	6	4	4
GTTGACAACCCGATTA	alt_959_upstream	30	33	39	26	34	18	29	20	39	21
CGCGTGCCTCGAGCTC	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCCTGCGTCTCAC	alt_959_upstream	10	11	7	5	13	2	13	7	14	9
TGCGGCTCATACCTAC	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGTAAAAAAAACA	alt_959_upstream	141	149	145	117	156	138	156	132	190	118
ATCCAAGGGCATTTGC	alt_959_upstream	153	246	194	167	228	155	230	146	250	154
ATTTGTATGACTGGCT	alt_959_upstream	83	91	94	67	76	60	84	66	101	59
GTTTTGATTGGTTACA	alt_959_upstream	20	32	26	18	22	22	40	23	21	25
CAGCGTGTAGCTATGC	alt_959_upstream	0	0	0	0	0	0	0	0	0	0
AGTTACGGATGCGTTC	alt_959_upstream	57	68	70	33	65	58	73	46	81	45
CATGTTAGTTCTGCCG	alt_959_upstream	36	73	65	40	56	55	53	35	70	43
CTGGTCTAGAACAGTT	alt_5942_new	0	0	0	0	0	0	0	0	0	0
GTACCCCGGCTACCTG	alt_5942_new	99	193	120	109	227	80	209	75	212	65
CTCTTACTTTGCGTTA	alt_5942_new	1	4	0	3	5	4	2	0	5	2
GTTTGAGCAAATGACC	alt_5942_new	12	33	19	25	39	20	41	13	29	19
TTCCGTCCGCCCTATG	alt_5942_new	22	35	17	22	36	25	28	14	34	23
AGCTAGAGACCCGTCC	alt_5942_new	14	38	20	17	23	18	37	16	20	16
TTGACCCGCTTTACGC	ref_5942_new	48	77	47	39	89	39	86	36	102	43
GTCCTCGGCTCAATCT	alt_5942_new	23	28	16	15	28	18	40	19	38	15
CATAATCCTATACATA	alt_5942_new	44	70	42	36	86	32	59	38	66	40
CGCGGAATGGTTGGGG	alt_5942_new	39	66	30	31	73	39	66	27	61	23
TACCCCGAACTTACCT	alt_5942_new	0	5	2	0	8	0	17	0	5	0
TTCATCAGTACCAATG	alt_5942_new	0	0	0	0	0	0	0	0	0	0
CCTGGCACCGGTCTGT	alt_5942_new	6	21	3	3	17	4	13	6	14	2
ATTTTATCGATCAGTC	alt_5942_new	18	20	22	15	21	15	30	14	30	16
CACGCTTGTATTTTAT	alt_5942_new	68	121	123	75	137	64	118	66	144	81
AACTCGGTAGTCCTCC	alt_5942_new	19	32	10	18	45	8	43	20	28	6
TCAAGGTGCCACTCGA	alt_5942_new	29	64	24	31	57	33	68	31	76	23
CAGTGTCTCACCATCA	alt_5942_new	38	75	55	48	97	47	94	32	104	43
ACTCAATTACCAAAAT	alt_5942_new	8	48	17	14	48	7	48	10	35	12
GCAGCATTGATTATCT	alt_5942_new	5	3	4	11	6	4	8	2	2	3
TTGTCGTTCATGGCTG	alt_5942_new	20	38	24	20	45	28	38	19	49	20
TACCAGGTACAGAGGG	alt_5942_new	18	46	21	16	35	31	54	14	36	22
GGGGACCCATTCAGTG	alt_5942_new	0	0	0	0	0	0	0	0	0	0
TAGCGGCACTCAGGGC	alt_5942_new	0	0	0	0	0	0	0	0	0	0
ACATCACCATGCACTT	ref_5942_new	0	0	0	0	0	0	0	0	0	0
ATTGGGACTTACGGGA	alt_5942_new	20	36	11	12	23	10	21	6	32	13
TAGATACCGATTAGTT	alt_5942_new	0	0	0	0	0	0	0	0	0	0
GGCTAGTCTACCTTCT	alt_5942_new	7	8	3	5	7	3	7	7	3	9
TTGATAAAGCGGGTTC	alt_5942_new	0	0	0	0	0	0	0	0	0	0
CGGGGTGTATGTCAAA	alt_5942_new	138	287	182	169	281	145	316	137	333	138
GACGGGATCTTCGCGG	alt_5942_new	15	30	22	21	46	18	29	15	27	26
GCTTGTGTTTAGTGTT	alt_5942_new	28	76	42	30	70	34	97	35	82	25
CCTCCACAATGGAATT	alt_5942_new	2	16	1	6	34	5	29	5	25	4
CCACCAGATTCTCCTA	alt_5942_new	0	0	0	0	0	0	0	0	0	0
TGGATTGTTACTTTCG	alt_5942_new	12	17	12	12	22	9	25	12	38	7
TTCGTAGCAACTTTGA	alt_5942_new	0	0	0	0	0	0	0	0	0	0
AAATGTCTCTAACGTG	alt_5942_new	1	6	8	3	5	2	15	0	4	1
GCTGTCGTCGACGCCA	ref_5942_new	14	23	22	23	21	11	20	12	22	12
AATATCTTAGACTCCC	alt_5942_new	22	44	21	17	39	19	46	17	43	26
AGCTGACCTGGTTTGT	alt_5942_new	10	12	9	8	18	12	19	12	21	13
TCGGAGGGTTAATGTC	alt_5942_new	0	0	0	0	0	0	0	0	0	0
TCGGACTGCCTGAGAT	ref_5942_new	97	153	133	93	198	102	226	90	221	78
CTCGCTACGCCACACC	alt_5942_new	6	12	2	3	15	6	17	3	15	2
TATTTACTACCCGGAC	ref_5942_new	15	41	14	14	40	23	66	11	32	20
ATAATAGTACCGCATT	alt_5942_new	54	85	59	47	74	44	65	48	100	30
TGCAAAAAATACAGTA	alt_5942_new	2	9	4	0	2	4	4	0	6	2
TTTATTGGGAATGGTA	alt_5942_new	2	0	1	0	1	0	0	0	4	1
GTTGCCCGCCACCGTA	alt_5942_new	0	0	0	0	0	0	0	0	0	0
AGTATGAGCCCCAATT	alt_5942_new	0	0	0	0	0	0	0	0	0	0
CGCTGTAAAATGATAC	alt_5942_new	3	12	8	7	7	7	12	4	8	6
CACACACTTTTCCTTG	alt_5942_new	0	0	0	0	0	0	0	0	0	0
CTACTGTTACGTTGTA	alt_5942_new	0	0	0	0	0	0	0	0	0	0
TCATCCGGCGATGTTT	alt_5942_new	17	27	14	9	32	16	25	12	18	18
TAGGATCAAGTACGTC	alt_5942_new	0	0	0	0	0	0	0	0	0	0
GTACTGGCGTGTCTCT	alt_5942_new	4	8	5	6	12	6	10	13	10	11
ATCTCCTTCTAATCGT	alt_5942_new	0	0	0	0	0	0	0	0	0	0
GTATCATGCTAGTTAT	alt_5942_new	74	172	105	92	183	80	149	71	160	85
GCCAGTTTTGTCCGCG	alt_5942_new	30	95	44	31	74	37	104	29	106	28
TGTTGAGTCGTTTAAA	alt_5942_new	26	37	24	24	40	30	50	22	49	23
ATTCTGTTCGTCTGTA	alt_5942_new	0	0	0	0	0	0	0	0	0	0
GGCAATTGGTTCGGTT	alt_5942_new	47	73	50	70	84	48	115	32	91	53
GAGCTCCTGATATCTG	alt_5942_new	0	0	0	0	0	0	0	0	0	0
ACGTGTCAGCCTACAC	alt_5942_new	14	30	22	18	29	19	38	16	35	22
CGAGTAACGATTCACA	alt_5942_new	5	12	5	6	10	5	7	3	10	1
CAATTCTACATCCGTA	alt_5942_new	36	72	44	45	88	25	78	44	75	35
CGAAATGGGAATATAG	alt_5942_new	142	217	193	146	227	125	211	133	254	114
CATAGGCGATTGAGAA	alt_5942_new	30	32	28	24	59	30	45	20	57	28
ATCGTCGAATCGGAGG	alt_5942_new	0	0	0	0	0	0	0	0	0	0
TACGACATATCGTTTT	alt_5942_new	1	14	15	9	11	7	9	10	18	4
ATGCTCATCTGTTGAT	alt_5942_new	0	0	0	0	0	0	0	0	0	0
CTCGTCTTGGTGTGCG	alt_5942_new	6	56	10	6	75	3	54	8	58	7
TGTAGAAATACCTAGT	alt_5942_new	29	45	20	23	42	18	54	19	37	15
GGCTTAATTTACTTGT	alt_5942_new	32	39	24	25	43	28	39	18	56	22
GTCCTTGTATTGATCG	alt_5942_new	2	8	1	3	8	3	4	3	2	3
ATAGTTCTATGTGCCC	alt_5942_new	4	12	8	2	11	5	15	7	9	2
AGGCTCTCTATTTGGG	alt_5942_new	21	35	24	13	43	21	18	12	26	13
CACGTTGTTTTTCCGC	alt_5942_new	36	58	39	34	74	44	47	36	55	34
TCGATGCAGAGCGCGT	alt_5942_new	0	0	0	0	0	0	0	0	0	0
CAACTTTTTACGGTCG	alt_4632_upstream	45	81	75	66	92	42	77	48	98	52
ATCTTATAACCGGTCC	alt_4632_upstream	11	10	9	11	19	17	26	24	17	6
CTGCCAGCGATATCAT	alt_4632_upstream	1	0	0	2	4	2	4	1	3	2
TTCATTGAACTAACGT	alt_4632_upstream	15	14	9	5	17	9	25	16	31	9
AACCAGCCGGTAGCCG	alt_4632_upstream	4	5	1	3	7	5	10	3	11	4
GGCTTATAAGGACGTA	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GGCTAATGCAGGTGTT	alt_4632_upstream	0	1	0	3	0	3	1	5	5	1
TTTCCAAGGGGGATCA	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
CGAGTAATGCGTAATG	alt_4632_upstream	40	70	70	46	75	45	62	36	81	34
CTCTTGTCATAAGGTC	alt_4632_upstream	0	3	3	1	4	3	4	2	2	1
GGTGAGCTGGATGACG	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
TTCTGTTTCGGCACTT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCGCTTCCTTGTT	alt_4632_upstream	103	155	151	116	161	114	174	108	164	101
TACGTGTGGCCCCTCC	alt_4632_upstream	15	20	7	5	12	4	16	6	15	7
TGCGCGTATTGAGATA	alt_4632_upstream	69	158	100	67	136	55	140	58	157	69
CAACACACTGCTGCGG	alt_4632_upstream	10	29	10	2	28	7	21	11	35	5
TTCGTTGTCCTAGATG	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
TATACCAACGCTTATT	alt_4632_upstream	19	24	9	11	9	8	21	8	16	12
GACTCAGCTTTGCTAC	alt_4632_upstream	9	17	13	6	17	8	26	6	11	3
CGGAATATATGTGGAG	alt_4632_upstream	30	38	26	26	38	30	52	28	44	20
CCAGTTGTCCCCCGAC	alt_4632_upstream	54	131	70	54	110	61	135	49	129	52
ACGTGTTTTTGATGAT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTGCCAAATTTTA	alt_4632_upstream	24	63	39	43	64	24	64	38	59	46
AAATGCCTGTAGTAGA	alt_4632_upstream	5	14	6	5	1	4	4	3	3	6
TTACCTACTCTCTATC	alt_4632_upstream	3	25	11	3	15	3	5	13	13	5
GTTGCCCTCTTTCTAG	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTTCACGTCTCAC	alt_4632_upstream	0	11	4	1	4	5	15	4	8	1
TTTATAGTGTCGAGGC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GAACTAGGATACCTGG	alt_4632_upstream	8	19	20	17	15	14	17	10	22	4
GTCGATAGTTCCGCGC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
TCGGTACTTACTCTGG	alt_4632_upstream	1	14	2	1	7	0	12	0	5	0
TGTATTCGCCCCAAGG	alt_4632_upstream	19	21	14	15	25	14	25	13	23	17
CCCTGTTATGACACTA	alt_4632_upstream	6	15	2	9	18	9	8	4	10	2
CGGATAGGATACCTGT	alt_4632_upstream	20	33	40	31	40	25	46	12	55	17
CGGGTTGCCAGTAGTA	alt_4632_upstream	14	33	15	14	36	14	20	10	21	13
CTAAGTGAAGGATGTT	alt_4632_upstream	49	70	31	47	65	46	75	57	72	50
CGTAGGTAGCTACTAT	alt_4632_upstream	22	49	34	23	46	21	31	18	50	29
TTAAAACTCCGAGCGA	alt_4632_upstream	3	11	11	2	4	4	13	4	15	2
ATTACTATTCTTATGC	alt_4632_upstream	4	10	16	4	13	2	7	6	6	4
CATTCGGTCTGGGACC	alt_4632_upstream	9	24	11	18	31	14	37	12	15	12
CGGCTTGATAATGGGC	alt_4632_upstream	1	4	1	1	1	2	1	5	3	2
CGCCCAGGACCGGAGC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GTTAACATGACAGCCG	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GTGGATGCGGAAGCCA	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
ATCCCGAAGCTGTCTA	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
AACAGCAAGGCCTTCT	alt_4632_upstream	56	60	40	30	50	35	65	38	78	35
ACATTGGGCGGGGATA	alt_4632_upstream	13	31	22	10	18	13	28	11	26	12
CCCGACGATTACTTAT	alt_4632_upstream	32	305	43	29	279	24	284	21	343	29
GATAGGGGGCAGCTTC	alt_4632_upstream	12	15	17	10	12	12	21	7	20	9
GTGCTGCCTCTGGGGT	alt_4632_upstream	6	17	17	5	24	14	13	9	15	5
GGAGATAGGTCTATGC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
CTACCACTTTGGTACC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCTTGCCTGTCTA	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
ATTGAGAAACCTGTTT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
CTATCTATAAGTTTAC	alt_4632_upstream	23	29	35	20	42	25	48	21	41	14
CATGCGGGTTGGCTAT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGTTTGCATTTAC	alt_4632_upstream	99	189	88	99	186	88	185	107	193	84
TTTCGACTTGGATTTT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
TCCATTTGCCACGTTT	alt_4632_upstream	10	23	13	6	14	8	18	10	14	4
ATTAACTGCTTCATTG	alt_4632_upstream	33	33	43	32	52	26	40	29	43	36
CCAGGGGACTCGGTAA	alt_4632_upstream	8	2	10	2	7	1	5	5	10	7
TATATTCAGCCCGGAT	alt_4632_upstream	24	44	41	25	33	20	38	17	48	18
TCACACTTTAATTTCC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTGGAGATAGTAG	alt_4632_upstream	9	7	6	11	9	6	23	4	13	5
GATACCAAAATGTTCT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTCTAACTCTCGT	alt_4632_upstream	24	32	21	21	20	22	43	38	34	16
GTCTGGCTGACTCCTT	alt_4632_upstream	4	5	6	3	10	3	9	2	6	2
ACAATAAATCGTCAAC	alt_4632_upstream	5	6	4	2	10	0	6	0	4	3
AAAATGTGCCCGCTTG	alt_4632_upstream	17	12	13	15	22	15	12	10	26	10
GGTGCACCTTGTGTTG	alt_4632_upstream	10	16	14	12	20	8	23	10	24	8
GCTTGATCAGACCGCC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
CACAAATCGTAAGTCG	alt_4632_upstream	12	21	18	9	14	11	23	8	27	5
GCGTTTCTCGTCCGGC	alt_4632_upstream	19	33	31	19	35	20	32	26	26	19
TTTTTCGATTCTGATT	alt_4632_upstream	4	12	6	4	8	6	13	7	24	14
AAGTGTGTGTGATGTT	alt_4632_upstream	7	5	5	1	1	2	4	2	4	1
GTTTTCATTGGGCCTC	alt_4632_upstream	20	33	26	26	45	26	38	14	32	17
TTCCCGCGTCTTGCTT	alt_4632_upstream	4	6	1	5	8	5	11	3	7	6
GCCTGATCGTTCCATA	alt_4632_upstream	52	114	73	78	113	62	121	60	107	62
AAGTGGCCTAACTATG	alt_4632_upstream	25	50	38	29	43	16	37	19	48	22
GCGCCTGGGCATTTCC	alt_4632_upstream	18	47	29	29	35	24	40	34	45	23
TACGCAGAGAACGCCT	alt_4632_upstream	0	0	3	5	2	0	1	1	1	0
TCATGGCAAACTATGT	alt_4632_upstream	19	40	33	26	48	35	53	22	48	21
CAGGATCGCGAATGAG	alt_4632_upstream	0	1	0	0	1	0	0	0	2	1
CTTTTCCGTTCGAGTC	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
TTCTTGTGGTGTTAAT	alt_4632_upstream	24	32	29	26	35	24	41	14	37	31
CCGCTTACCTCTTCAT	alt_4632_upstream	6	42	7	12	29	14	48	11	37	7
TATGATTGTTCTTGCA	alt_4632_upstream	39	87	46	34	73	36	73	44	82	43
ACCCTACGATCCTGCT	alt_4632_upstream	36	46	25	36	50	32	59	44	68	26
GGCTAATGCAGGTATT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GATGCTATTTAATGTG	alt_4632_upstream	26	38	38	20	61	29	45	25	69	36
ATCCATGCGCCGGTAT	alt_4632_upstream	25	51	21	17	40	26	33	24	37	16
GCGTTTAGTCCGGGTA	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCGGTGCATAATC	alt_4632_upstream	46	82	56	54	69	50	72	48	84	54
TCGCCTGGTGAAGTAT	alt_4632_upstream	13	32	22	26	27	22	51	19	58	16
CCGATCCTATCACGTG	alt_4632_upstream	5	10	3	6	9	6	13	6	7	6
CATGGGGAAATCCCTG	alt_4632_upstream	176	240	191	157	269	166	285	162	270	176
TATCATGGGTTTCATT	alt_4632_upstream	19	18	23	12	22	15	34	18	34	15
GGGTCCAGCATACCGC	alt_4632_upstream	9	9	6	3	11	1	13	4	10	3
AGTTTCATACTTGATT	alt_4632_upstream	34	46	30	17	59	28	47	24	49	16
TTAGCCCGATTAATAG	alt_4632_upstream	5	9	18	10	25	12	9	6	21	11
CCGCTAAGGGTAGAAA	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
AGTTAAAGATACTGTA	alt_4632_upstream	16	33	13	15	26	23	28	7	20	19
CGGCCTCCGCGTAGGA	alt_4632_upstream	17	12	15	14	20	14	18	19	26	9
TGGTAGAGGCTCATAA	alt_4632_upstream	73	102	68	61	67	62	80	32	119	58
GGGACTCCGACTGTAT	alt_4632_upstream	15	16	14	12	12	11	23	19	38	12
CCAGTTTCGAATCAAT	alt_4632_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTTACGGCCGCAC	alt_4632_upstream	16	34	17	15	47	16	37	14	57	20
CTCAGGACATTCGATG	alt_4632_upstream	66	118	75	63	105	72	111	67	132	59
TTACTGGTCCGCGGCC	alt_4632_upstream	1	1	0	1	2	1	1	0	2	0
GCTACAAGGATATAGG	alt_5952_new	15	43	27	21	50	20	45	24	54	16
CTTATCTGTCTTGAGG	alt_5952_new	23	34	32	22	38	31	22	36	44	31
GCAGGTACTATTGGTT	alt_5952_new	12	10	7	5	12	5	14	5	19	8
GCATTATCCTCACATG	alt_5952_new	14	34	14	16	32	23	28	13	28	24
CATTGGTTGACTGATT	alt_5952_new	0	0	0	0	0	0	0	0	0	0
GGATCGGTTTCTTCAT	alt_5952_new	14	21	13	14	20	20	23	18	22	18
ACGATGCGTTCATGGC	alt_5952_new	4	5	0	3	2	0	7	0	6	2
CATCTCTAACCCTGTT	alt_5952_new	0	0	3	0	0	0	1	0	0	0
CTCTAGGGGGCATCGT	alt_5952_new	2	2	1	2	3	0	2	0	4	3
TGAGGAGCAACAAGTC	alt_5952_new	0	0	0	0	0	0	0	0	0	0
CATTTCGTCTCCTGGC	alt_5952_new	8	5	0	3	6	3	4	4	3	4
TCTTCATTCTCCCCTC	alt_5952_new	3	6	1	3	5	3	11	2	4	1
CTAACGTTAAGGTCAG	alt_5952_new	0	0	0	0	0	0	0	0	0	0
TGAGTACCTGCACCCG	alt_5952_new	0	0	0	0	0	0	0	0	0	0
CATTAGTCTGAGTTTC	alt_5952_new	19	30	20	11	42	19	41	15	36	10
CTAGGCGTTGTTGGAT	alt_5952_new	31	45	23	35	61	19	44	24	46	18
CTTAACGTTAGAATGG	alt_5952_new	4	7	8	5	13	5	5	8	7	5
CAAATATGGGTTCCCG	alt_5952_new	45	100	66	56	88	61	73	41	111	48
TTGCTCCGCATAGTCC	alt_5952_new	24	56	28	20	53	30	44	24	61	27
TAGCAACAGGACTATG	alt_5952_new	0	0	0	0	0	0	0	0	0	0
CAGTAAGGCAGTGAAA	alt_5952_new	7	15	6	8	14	3	17	8	6	6
GGTATTTACCCTTCTT	alt_5952_new	0	0	0	0	0	0	0	0	0	0
GTGATCTGATAGAACA	alt_5952_new	0	0	0	0	0	0	0	0	0	0
ACCCATTTTGTTAAGG	alt_5952_new	0	0	0	0	0	0	0	0	0	0
TTGTGTTTGCGCTTGG	alt_5952_new	2	4	4	6	5	7	8	1	1	2
CTGATACCGCTGGTAA	alt_5952_new	0	0	0	0	0	0	0	0	0	0
GCCACCTTTACTGTTT	alt_5952_new	37	94	49	53	98	24	83	34	116	51
GCCTTGGACGTGTCTA	alt_5952_new	11	47	23	17	30	17	41	12	26	11
ACGATACTCTGATTGT	alt_5952_new	6	19	11	6	22	14	18	4	18	8
GCTGGAAGAACTCTCC	alt_5952_new	0	0	0	0	0	0	0	0	0	0
GCCCGAGAGCTCATGG	alt_5952_new	6	13	9	4	9	6	15	8	11	4
CTATGTCATTAGTTTC	alt_5952_new	6	9	3	3	13	10	10	3	13	4
TAGGATCCATATCGGC	alt_5952_new	22	29	22	21	30	28	33	14	27	20
TCCGCGTACACTCCTT	alt_5952_new	0	11	1	0	9	0	8	0	19	0
ATTACTATTATTCATG	alt_5952_new	11	29	12	14	27	30	30	11	28	14
TTCCAACGTTTCTCGC	alt_5952_new	0	0	0	0	0	0	0	0	0	0
GCTCCCAGTGCGGAAT	alt_5952_new	1	1	1	2	5	1	7	0	0	1
CACCGCTCCAATTCAT	alt_5952_new	3	7	4	5	5	4	9	1	12	4
CTGTAGGGAGTGGGCC	alt_5952_new	0	0	0	0	0	0	0	0	0	0
TACGCCCTTTTGGGTA	alt_5952_new	0	4	1	2	6	1	0	0	2	1
AATGTCTGGGCTTATC	alt_5952_new	14	4	1	2	10	2	3	7	3	1
GCCGACTAAAAGGTGC	alt_5952_new	0	0	0	0	0	0	0	0	0	0
TTCCTAACTCATAGTA	alt_5952_new	0	0	0	0	0	0	0	0	0	0
GTTCCATTAAAACAGA	ref_5539_upstream	74	72	107	92	94	78	75	89	65	68
GGGGAGTTATCTGGTT	ref_5539_upstream	31	26	48	41	28	48	23	28	33	30
CACCCATCTGCTCCTT	ref_5539_upstream	17	16	15	20	14	14	20	15	32	12
TCTCCTCTCTCTTCGC	ref_5539_upstream	19	23	20	23	19	11	22	16	23	19
GGCGGGCATAGTTTAT	ref_5539_upstream	130	115	222	149	123	166	142	141	161	144
TTCGACCTGGTGACCT	ref_5539_upstream	34	17	25	31	20	35	26	33	35	17
ACATGATATGGTGAGT	ref_5539_upstream	31	21	27	20	13	31	24	22	14	22
TGCATTTGCGGGTGCA	ref_5539_upstream	34	29	54	41	30	43	37	29	31	36
TCGTCGCAGTTTACAC	ref_5539_upstream	51	117	98	80	114	75	129	55	114	63
ATTGCTCCACCCTATA	ref_5539_upstream	319	231	329	313	243	255	235	265	264	272
TTATTTCGGCAGCTCT	ref_5539_upstream	32	30	44	22	36	30	28	42	14	41
CGTGATTGTGCAATAC	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGCATATGCGAAC	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
AAGATCATTACTTTGC	ref_5539_upstream	19	23	26	20	7	6	20	9	23	13
GCATTGACGAGTAATC	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
TGCTCTAAGACCAACG	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
CTGACGGGTCCTATTG	ref_5539_upstream	1	1	0	3	1	1	1	2	0	2
CAGGCTGCCGATCCTG	ref_5539_upstream	54	54	73	66	71	61	71	73	85	61
GTTAGTTCGGCTGACT	ref_5539_upstream	13	16	11	18	5	11	10	7	4	5
GTACTGTTAAAACGGA	ref_5539_upstream	16	10	12	18	15	5	13	5	13	13
CTCGACATGGCACCGT	ref_5539_upstream	25	29	29	33	27	30	22	24	29	20
GTGTTCACGTTGGAGG	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
GGGTTCGCCCCGAGGC	ref_5539_upstream	123	75	123	130	68	111	90	101	82	91
AGAATTGGGCTTCTCC	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
ATATAGGCCTGTCCCC	ref_5539_upstream	18	4	13	16	9	13	16	13	10	18
ATCTCTGCTGCCACTC	ref_5539_upstream	63	56	76	83	57	65	78	67	70	67
TAGCCCACATGACCAT	ref_5539_upstream	17	7	12	8	16	10	10	10	8	14
AAGATCTCAGCTGCGC	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
CATTAGTGCCCGGGGC	ref_5539_upstream	140	117	139	143	125	99	117	124	112	122
TCCGCCCGTCCCATTC	ref_5539_upstream	78	52	70	58	39	42	41	47	40	45
GAATGCTAAGTTATCT	ref_5539_upstream	65	47	75	74	65	76	54	63	49	50
ATCGATATGTAAGAAA	ref_5539_upstream	37	37	36	42	40	43	38	44	41	24
CGTTTGACTGTCGTCG	ref_5539_upstream	38	32	44	36	44	32	46	28	41	31
CACCTGTAGTTTCCAA	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
ATTGCTCCCCCCTATA	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
GCAGGAGGTTTCGCGT	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
ATTGTTCTATCTAAAG	ref_5539_upstream	51	49	50	57	52	33	52	35	54	51
CACCTGACTCTTCCTG	ref_5539_upstream	45	36	40	31	47	36	53	30	40	35
TGCGTTCCTTATAAAC	ref_5539_upstream	70	73	77	68	78	71	61	50	65	42
ATCGTCCAGGCGAGAA	ref_5539_upstream	101	89	118	97	114	96	89	110	110	98
TCTCTAGAATAAATGC	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
TTGATCCTAGATTGGT	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
CATCTTTTGGAAATAG	ref_5539_upstream	31	30	45	32	29	44	24	33	35	32
ATCCTAATCTGCCTAC	ref_5539_upstream	3	0	2	3	2	5	7	3	3	0
GTTGAACCTCTGTGTC	ref_5539_upstream	48	53	61	61	48	45	42	50	60	43
GTCATTGCTGACCACG	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCTGTCCCATCGT	ref_5539_upstream	38	34	48	42	39	30	33	49	29	32
ATATTTCGGACGCCGT	ref_5539_upstream	59	40	65	48	37	60	43	51	26	49
ACTGGCATGTACACTT	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
CTAAAGCATGCGTACG	ref_5539_upstream	33	57	36	24	54	26	53	27	37	41
GTCGGTTTCGACATAC	ref_5539_upstream	15	24	20	13	9	17	9	10	15	15
TCTTGGCTCGCTTCTC	ref_5539_upstream	49	76	49	80	50	39	34	68	49	46
TTGGGCAAATGTCTTT	ref_5539_upstream	37	38	27	28	22	28	37	41	24	23
AAAATGCCTTTGCTAT	ref_5539_upstream	45	31	58	57	41	42	52	57	45	38
CATGTGGGTCCTGGAA	ref_5539_upstream	33	20	27	18	21	25	29	34	21	25
GCTACAGCCTACCTCC	ref_5539_upstream	10	27	17	20	14	22	25	19	23	19
ATTGTATTTCGATTCG	ref_5539_upstream	108	86	128	107	104	110	68	104	117	103
GGGGACTATCGCTACT	ref_5539_upstream	31	18	30	35	25	22	27	30	29	29
GACGCGTGATGACTCT	ref_5539_upstream	60	45	40	45	45	40	46	46	49	49
GATACGCATTATCCTT	ref_5539_upstream	31	24	44	26	16	31	25	44	31	25
TCCACACGGCTCTAAG	ref_5539_upstream	211	211	277	284	274	266	259	240	242	240
CTACTTAATTCTTGAC	ref_5539_upstream	96	60	90	101	73	85	76	78	93	81
TTTTTGCCATCATTGT	ref_5539_upstream	19	23	8	19	16	17	18	16	22	19
TGCGCTTGTGTGTCTG	ref_5539_upstream	11	4	9	5	6	2	3	1	2	6
CCTCCGACGATAACGG	ref_5539_upstream	44	36	40	38	29	32	35	30	43	39
CCAAATAGGCTCAGTT	ref_5539_upstream	26	24	29	26	17	26	42	24	27	14
TAACGTAATTTTTTGT	ref_5539_upstream	263	184	380	314	216	265	224	305	205	265
GCCTCTACACTGCGCT	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
GGCAATATGCCCCTTA	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCCTTTGTAATGA	ref_5539_upstream	29	14	14	27	25	28	16	22	23	24
ACGTATATCGCATGCT	ref_5539_upstream	25	16	34	28	26	24	30	30	20	23
TACCAGGACCCTCCAT	ref_5539_upstream	9	15	21	27	21	15	25	15	22	12
CCGTGCATTGGACTTT	ref_5539_upstream	51	92	45	37	83	35	72	32	96	42
GTTCAGGTTCGAGTTT	ref_5539_upstream	14	16	28	12	15	21	13	21	25	19
GGGCCACCCAAGTTAT	ref_5539_upstream	166	149	204	155	137	162	138	169	161	151
AGTTTTACGCATCGTT	ref_5539_upstream	7	5	7	10	5	7	4	4	11	5
TGGACACTAAACGTGA	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
GTACAGCCCCTCTATG	ref_5539_upstream	113	125	128	131	135	104	118	105	126	139
ACCAGTAGAATCCGTA	ref_5539_upstream	16	7	7	19	11	14	7	10	9	15
CTAGATTTTGCGACGT	ref_5539_upstream	0	0	0	0	0	0	0	0	0	0
CCCACGATGCAGGATG	ref_5539_upstream	138	121	211	179	145	158	149	181	119	157
TACTCGTGAGCGTGTT	ref_6084_new	20	26	28	17	31	15	29	19	35	28
ATCCCGACATGCACTA	ref_6084_new	40	59	46	44	56	48	61	43	68	37
TTGGAGGCTCCAATCT	ref_6084_new	4	10	5	4	7	13	13	6	6	13
CCCAGGGGAATGGTTT	ref_6084_new	91	102	109	97	101	88	92	82	109	68
CTCAGTCAAACGTTTT	ref_6084_new	3	2	4	4	9	7	11	12	6	5
CAAGTTAAAAATATCA	ref_6084_new	0	0	0	0	0	0	0	0	0	0
ACTGTTCTAGGATATT	ref_6084_new	7	21	13	17	15	10	16	10	17	6
TGTTTTTCGACGAATA	ref_6084_new	43	34	50	28	36	31	26	28	31	30
TAGCCTCGCACTAGCG	ref_6084_new	75	88	74	62	87	69	100	52	105	54
AACGGGGCACCTTACG	ref_6084_new	60	73	75	68	69	62	87	68	80	47
GCATTCGTTTTAGTAC	ref_6084_new	21	37	25	23	47	25	31	20	27	23
CACGGTTTTTAAACGG	ref_6084_new	0	0	0	0	0	0	0	0	0	0
TCCGTTGCCCAGGCGT	ref_6084_new	83	96	78	83	101	80	115	84	99	69
AGGGCGCCTATATCTA	ref_6084_new	43	46	58	49	41	50	42	31	56	32
GCGATAAGGAATTCGA	ref_6084_new	45	44	42	35	52	34	40	35	61	32
CTAGGGCTCCTCCGTC	ref_6084_new	0	0	0	0	0	0	0	0	0	0
TATAAACCTTTCAAGT	ref_6084_new	21	31	24	24	20	23	35	20	28	24
TTCTGTACTATACTTT	ref_6084_new	49	51	52	48	62	57	67	48	63	46
GATCAATAGTAGATCC	ref_6084_new	362	378	398	340	376	350	400	305	475	286
ACAGGTGGTGATTCAG	ref_6084_new	33	37	32	18	48	20	37	32	17	28
TTAGGATCGGATCTGT	ref_6084_new	57	55	71	49	51	42	55	50	73	51
CACGGCGTCCCTGGTT	ref_6084_new	11	22	33	18	25	20	37	5	35	19
TCAGCGCTCTCTCACT	ref_6084_new	17	51	21	22	37	16	47	18	68	12
GTCTAGCGCTGAAGCA	ref_6084_new	50	63	55	39	53	46	65	45	57	35
CACCTATATCCCCACA	ref_6084_new	13	14	9	17	17	12	15	6	15	12
TGTTTGGGTAACGTGA	ref_6084_new	28	25	38	34	28	31	26	22	28	18
ATCTTCTGGTCCGTGC	ref_6084_new	33	66	57	49	50	45	50	44	40	40
TCCACAGCGAAAAGTC	ref_6084_new	0	0	0	0	0	0	0	0	0	0
GAATCAAATGCCATAT	ref_6084_new	12	18	16	13	14	16	25	12	24	10
TACCTCCCAAGTAAAC	ref_6084_new	5	25	7	10	25	14	25	6	23	3
AACAGTGGATAGTTAA	ref_6084_new	5	5	8	7	6	4	4	4	8	8
AGATAGTGATGCACTG	ref_6084_new	7	5	7	5	6	7	8	6	14	7
GCCGATACCGCCGCAG	ref_6084_new	11	44	15	26	35	18	30	9	38	12
ATTTTACTCCCGAATG	ref_6084_new	17	18	16	21	21	13	23	18	24	22
GAGTCACATTAAGTGC	ref_6084_new	30	31	35	25	34	26	30	32	34	36
GACTTACGTCGACTGT	ref_6084_new	11	15	13	6	18	5	19	14	23	13
CTAATAGTAAATGGCA	ref_6084_new	183	210	291	231	256	233	256	201	261	183
CCCCTATTTTACCGCG	ref_6084_new	21	36	36	37	29	28	26	26	43	16
ATTTTGGCATACTCGG	ref_6084_new	35	68	56	53	76	40	68	47	77	48
GCGGTTAGAGCCGTTA	ref_6084_new	18	23	19	28	31	13	26	12	23	8
GGAGCCGGCCTCTATG	ref_6084_new	0	0	0	0	0	0	0	0	0	0
GATGTTGGTTGAAGCC	ref_6084_new	201	211	262	222	221	268	254	187	264	205
GGAATATAACCCATTT	ref_6084_new	26	18	13	21	21	15	25	12	31	18
AGCATGCTGCAGTTCC	ref_6084_new	91	96	109	99	85	92	116	77	113	85
TTCGTTTGACCGATAG	ref_6084_new	14	17	22	12	14	7	9	9	24	15
GTATTCTAACAGACAC	ref_6084_new	10	2	6	8	1	4	10	4	4	1
TGCAATAATCAAACAT	ref_6084_new	28	49	53	42	47	28	53	50	38	46
GGGCTACATCTAGGTG	ref_6084_new	0	0	0	0	0	0	0	0	0	0
TGGTATCAAAACGACC	ref_6084_new	61	72	93	81	74	75	71	72	80	60
GTCCCCCCGTTGTTAC	ref_6084_new	8	10	10	6	9	8	15	7	13	5
TTCGCTTTCAGATTCG	ref_6084_new	99	91	134	100	102	98	115	89	101	101
GTTAACCTGCAGTCGA	ref_6084_new	0	0	0	0	0	0	0	0	0	0
TTAAATAGTGTCTTCT	ref_6084_new	54	55	90	55	58	47	67	63	61	39
CTGCTTCCTCACTCAG	ref_6084_new	18	21	17	24	14	16	32	13	30	21
CTGAAGGTCTTGAGAG	ref_6084_new	41	20	29	29	32	22	42	19	36	28
TGGATCTGCCCATTAG	ref_6084_new	0	0	0	0	0	0	0	0	0	0
GTTCCCTAACAGGTGC	ref_6084_new	21	24	27	19	27	21	31	24	23	21
CCAAAACAGCTGTGAG	ref_6084_new	0	0	0	0	0	0	0	0	0	0
TAGTTGGTATTAGCCA	ref_6084_new	6	7	4	10	2	4	6	4	5	4
CTCTCGATCTAGAACG	alt_1014_missing	100	128	125	90	119	95	118	96	144	87
CTTAGCTGAATACGTC	alt_1014_missing	18	16	12	14	21	10	18	13	17	16
TAGTCCTGACTAATTT	alt_1014_missing	57	44	42	38	35	29	41	34	42	37
GATATCCAAGTTGTGG	alt_1014_missing	5	5	7	8	12	8	8	5	13	6
ACTTATTGACAAAGAA	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
TTCAATCATAACGGTC	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
CTTAAAAACGGTAAAT	alt_1014_missing	11	10	13	11	18	7	13	8	6	11
TGTTTCGACCGCTACG	alt_1014_missing	7	16	12	8	10	14	18	18	12	8
CCCGCTTGTGTAACTA	alt_1014_missing	30	33	37	23	32	24	36	25	32	28
ACATCAATAGATATCT	alt_1014_missing	11	9	8	6	10	7	5	3	10	7
GCGACAATCGTTTCCC	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
GCAGGCCGCATCGGTA	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
CGCTGTAGTACTTTTT	alt_1014_missing	27	27	26	26	18	12	22	19	30	12
GAGCGACGATCCGTCC	alt_1014_missing	19	14	16	9	20	12	10	9	11	18
CCATGTGTTGCACTAC	alt_1014_missing	7	16	16	18	10	7	9	4	21	5
TTTCTGACCTTTCCGC	alt_1014_missing	19	20	31	17	29	32	28	29	27	11
TATCGGTTCGGTCCTT	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
GCTAGTGTCATCGTAG	alt_1014_missing	3	12	5	9	10	7	7	7	15	14
ACTGGTTGTTTTGTAG	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
GGACATGCTCTCCGGT	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
ATAATCACTATCTCGT	alt_1014_missing	1	1	8	3	4	3	3	3	1	3
CTGCGCAACCTTCGTA	alt_1014_missing	0	0	3	2	7	1	2	3	1	0
AACCTATTGATTATTT	alt_1014_missing	155	179	146	163	202	146	187	122	164	150
GCTTTAAAATGTTATT	alt_1014_missing	7	6	6	3	8	3	3	6	2	3
TAGGTTACGCGGGGCT	alt_1014_missing	43	62	59	51	68	52	69	48	66	46
ACGCAGCCCCTTTGAG	alt_1014_missing	38	46	40	34	54	38	49	37	52	31
CTTTCCTAGTTTGTAC	alt_1014_missing	19	32	17	11	28	15	25	24	19	17
AACCTGTCTCCCGCGT	alt_1014_missing	17	32	10	9	31	11	32	13	23	10
CGCCTATTCCATTGTT	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
ACGGATTCCGGCTAAG	alt_1014_missing	19	15	13	17	15	19	11	7	13	12
GGCTTGAGAGTACTTA	alt_1014_missing	10	13	11	6	19	11	18	9	13	9
CAGGGGACAATTACGC	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
ACGGATTCCGGTCTCT	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
CTTCCGCTTCTTCGAA	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
ATTACTGTCCGTATTA	alt_1014_missing	0	0	0	0	0	0	0	0	0	0
GCCAAATTTCCCTCGT	alt_5945_new	12	20	16	8	17	9	25	17	15	12
GGTTATCACTAAGATG	alt_5945_new	1	5	3	2	7	3	4	2	5	2
CGAACTCTTTATTTAT	alt_5945_new	22	45	39	30	27	27	45	20	51	29
CCGGATCGGCGCTGTT	alt_5945_new	48	87	55	47	63	45	73	60	70	50
CCCTTACGCCGGCTGC	alt_5945_new	17	34	23	12	20	17	25	12	25	17
ATGAACAACGCAATTG	alt_5945_new	5	7	6	12	6	6	4	5	9	4
CCTAAGTCTTGAGTGC	alt_5945_new	118	199	146	110	235	93	245	106	259	84
GCTTGGTCGTTAAGTC	alt_5945_new	0	0	1	0	1	1	1	0	2	0
TTGCAAGGTCTTAGGT	alt_5945_new	33	55	50	39	69	29	71	25	77	31
ATTCGATATCATTTGT	alt_5945_new	10	17	13	11	28	16	19	4	22	13
GGCGTGGAAACTAATT	alt_5945_new	0	0	0	0	0	0	0	0	0	0
GAATCGTCGAGTGGTT	alt_5945_new	0	0	0	0	0	0	0	0	0	0
ATATTGTCCCCTGAAA	alt_5945_new	15	30	11	21	27	5	19	14	29	21
TAGCACGCTCTTCCCC	alt_5945_new	4	14	4	2	12	1	17	0	12	4
GAGGTGAACCCCGGGC	alt_5945_new	24	28	30	19	38	27	45	21	33	13
CCCCGATAACGCTAAT	alt_5945_new	14	36	23	16	29	16	48	19	42	22
GACTGCAGCCCGGTTA	alt_5945_new	23	36	46	48	54	24	53	31	62	21
ATGCTTCCACGTGTGC	alt_5945_new	14	7	11	7	17	5	8	8	5	8
TGTGGGTGCAAATACT	alt_5945_new	2	2	3	3	5	3	1	1	2	1
GTGTCGTAAACTCATC	alt_5945_new	5	15	8	17	21	7	12	10	27	11
AATTTCTCAAGTACAC	alt_5945_new	7	38	21	11	37	13	36	14	47	15
TTGTGGCACGCGGAGT	alt_5945_new	31	40	46	23	42	33	53	29	54	36
TGGTTCGCGAATCCTG	alt_5945_new	21	26	29	13	30	20	34	20	33	19
CGGTCGGGGCATTTTT	alt_5945_new	4	0	6	1	7	1	0	0	4	5
CGGAGTGAGAATTCTG	alt_5945_new	0	0	0	0	0	0	0	0	0	0
CGACCTACCATTAAGT	alt_5945_new	11	34	14	10	36	15	56	15	47	11
ATTGGTTTATGTGAAG	alt_5945_new	8	22	11	11	22	14	32	11	24	12
TACTTAATCTTGCTGT	alt_5945_new	0	0	0	0	0	0	0	0	0	0
TTTTTGTTGCCCACCG	alt_5945_new	45	82	40	48	76	41	90	60	93	48
CTGGATATATGGTCGG	alt_5945_new	54	92	88	54	97	52	93	68	101	58
CAACCGGGTCGCTCTT	alt_5945_new	11	26	15	7	34	15	26	16	14	5
CCCTTTATGAAGTATA	alt_5945_new	14	7	20	10	6	11	5	10	11	10
AAGGTGTTCTCACGAT	alt_5945_new	0	0	0	0	0	0	0	0	0	0
TGCTTCCACGCTATCA	alt_5945_new	15	27	10	14	21	9	23	14	35	16
GTTTGCCCTCATCCAC	alt_5945_new	53	82	71	47	104	75	112	52	114	50
AGCCTCCTGTCGGATG	alt_5945_new	11	16	5	6	11	11	10	6	21	12
CTATCACCGCACCGCC	alt_5945_new	0	0	0	0	0	0	0	0	0	0
CACCTGCGGTCGCCTA	alt_5945_new	0	0	0	0	0	0	0	0	0	0
ATTGGCTGCTCGATAA	alt_5945_new	1	4	2	2	8	10	8	6	5	6
CGGGAATAGAACAACA	alt_5945_new	13	21	14	16	26	13	20	23	34	9
TTGCGTCACGTCCTCT	alt_5945_new	0	0	0	0	0	0	0	0	0	0
GCACGAACGGTGCTAG	alt_5945_new	21	37	29	20	38	15	46	21	41	25
CTGGTCGGCCTCATGT	alt_5945_new	3	8	16	6	9	5	7	1	11	6
GTCCCTTCGCGAACGA	alt_5945_new	0	3	3	0	1	0	1	0	1	1
TCCAATACGTTTATTC	alt_5945_new	0	0	0	0	0	0	0	0	0	0
TTCTTAAGCTTTTGCC	alt_5945_new	14	18	8	15	23	18	18	6	20	16
CTGCTACGTCTGCGGC	alt_5945_new	29	145	38	27	155	31	183	26	180	16
AGTCCCTAGATAAAGT	alt_5945_new	0	0	0	0	0	0	0	0	0	0
TACGAAGCTTAGAATT	alt_5945_new	14	30	16	15	28	18	33	20	35	18
AAACGATGGGCTGAGG	alt_5945_new	18	16	15	18	17	22	27	19	29	11
AGAGGTACTAATCTCC	alt_5945_new	33	39	22	25	51	19	34	22	42	20
ACTTCGCGTTTTCTTT	alt_5945_new	0	0	0	0	0	0	0	0	0	0
CAAAGTAGAGCCATGC	alt_5945_new	14	20	17	5	15	13	26	14	17	12
CTATGCGTTGCTAGTG	alt_5945_new	2	4	1	0	3	5	2	2	3	1
CACGCGCGCCTTTGTT	alt_5945_new	63	80	49	45	100	55	98	54	91	40
ACACGGTGAACCGATA	alt_5945_new	32	48	42	19	57	34	59	19	50	17
GATCTCGGCCACAATG	alt_5945_new	22	70	28	22	35	30	46	41	54	29
TCGTTGATCGACCTTC	alt_5945_new	0	0	0	0	0	0	0	0	0	0
GCCACGGCACTGGGGC	alt_5945_new	14	13	10	5	8	10	17	8	19	4
CGGGGTATAGTCTGTC	alt_5945_new	13	14	16	13	24	18	16	20	18	10
AATTCTTGCTGCTCTT	alt_5945_new	16	32	28	19	27	18	29	19	50	17
AGCCCCTATATTTGGT	alt_5945_new	20	37	24	13	36	28	32	14	39	16
GTACCAAACTCGTCGG	alt_5945_new	10	37	19	29	20	14	30	18	29	17
CAATATCGCAGCAGAT	alt_5945_new	65	140	69	65	135	70	133	65	119	65
TCTCCATAACGTTCGT	alt_5945_new	9	11	3	7	14	14	3	6	12	3
CCGCCTGTGTTCCGTA	alt_5945_new	18	140	24	29	166	25	128	15	176	17
CGTGCAGCTTCATTGT	alt_5945_new	4	1	2	2	1	2	0	0	4	1
TCTTCTCAACAGGTCT	alt_5945_new	29	61	25	35	46	29	51	23	68	19
GTGTCGTGCCCTCGAC	alt_5945_new	32	57	53	40	80	40	88	47	73	26
TTTTTTTCTCCTCGGC	alt_5945_new	61	78	63	47	65	65	80	42	88	52
GATATGTTAACCTGCA	alt_5945_new	4	15	7	3	6	5	6	8	10	7
GCTTCCCGTCGTAGTT	alt_5945_new	4	16	1	3	15	0	9	0	11	0
AAATCTCTTTGATTGA	alt_5945_new	96	178	150	120	168	104	192	85	156	67
GGTTGAGCATCCTAGC	alt_5945_new	25	48	38	30	50	26	56	22	45	20
CAATCGTTCTGTTGGG	alt_5945_new	37	62	47	44	65	25	80	44	76	45
CAACGCCGGCTAATTG	alt_16_fdr	18	22	24	15	14	21	14	13	16	10
GAGTGTACTTCAGGGT	alt_16_fdr	11	11	13	8	17	12	9	11	3	13
TCTCAGATTGGCTAGT	alt_16_fdr	1	1	0	2	0	0	0	1	0	0
CTACAGACATCTCACT	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTTAATTCTGAGC	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
GGGGCTTGCGGGGCCT	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATCTCCGTCCCT	alt_16_fdr	65	45	89	67	63	74	61	72	50	65
GCTTAGCATTTTGTTC	alt_16_fdr	21	17	25	26	23	26	21	27	19	26
ATCCTTAGCATCGTAG	alt_16_fdr	14	12	19	8	11	18	19	10	21	19
GACCTCATTTACGCGA	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
TTCCATTACATAACGG	alt_16_fdr	13	13	14	10	8	15	6	13	10	13
GTCCGGGTATTCACTG	alt_16_fdr	22	14	27	10	18	11	18	15	12	8
ATCATTGGGCCGTCAG	alt_16_fdr	12	8	11	11	12	10	7	12	15	12
TCGGCAGAAATCAAGG	alt_16_fdr	46	31	41	23	44	37	41	43	41	37
AGATCTCTTGTCCGAG	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
CGTAAATTAGTTTTCA	alt_16_fdr	11	19	23	17	10	13	9	10	13	10
TGACCGCGTTTAACTG	alt_16_fdr	63	37	56	41	35	64	56	43	56	45
GCAACACGTCTATTCA	alt_16_fdr	0	1	1	0	1	1	2	3	1	1
TATCGCTATCATCTGT	alt_16_fdr	23	29	39	18	24	20	24	26	27	29
TGTAAAGTTTTCAAGT	alt_16_fdr	176	134	211	143	125	177	126	182	165	154
ACGCCTTGGTAGCAAG	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
ACCTCCTCCTGTTTAC	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
AATTACGCGGGAGTGT	alt_16_fdr	60	49	86	36	41	53	44	64	52	64
AGGTGTTGCATGTGGG	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
TCTACCGCTACCTTCT	alt_16_fdr	78	110	106	83	100	81	91	83	101	90
GGTGGGTACACTTGCC	alt_16_fdr	13	20	23	7	28	6	11	6	26	9
TCGTGCCGATCCGCTC	alt_16_fdr	4	2	7	1	1	1	3	4	0	3
CTAATAAAACGACCTA	alt_16_fdr	80	93	92	81	115	75	101	67	107	61
CTGGTTTTACCCATCA	alt_16_fdr	30	17	24	23	22	37	15	15	28	15
AAGCCCCAAGTGTATC	alt_16_fdr	140	92	152	92	102	103	108	115	113	115
GTTCAGTCAATTTCTT	alt_16_fdr	18	22	41	22	22	24	18	33	20	32
CTGTTTTGCTGTTAAG	alt_16_fdr	22	22	28	17	11	20	23	20	26	30
TGGTGACGCTTATGGG	alt_16_fdr	15	6	24	12	16	10	11	4	13	20
ATGGTGGCTCCTCCAT	alt_16_fdr	184	148	232	161	132	198	146	169	129	177
CTTTATGGTTCTGGTC	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTAGGAGAATCGC	alt_16_fdr	28	19	28	23	24	29	26	25	23	30
TATGGCTCCCGAGAAG	alt_16_fdr	40	24	43	28	20	36	28	26	34	19
AGACCTATCTAAATCC	alt_16_fdr	37	33	41	34	28	27	37	29	36	15
AGAACTGCGCGTTAAA	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGTACGTTGTCA	alt_16_fdr	3	3	4	4	2	3	7	5	2	3
TATCAGCTGCCGACTC	alt_16_fdr	38	37	43	42	30	30	35	28	27	35
TTCCCTCGCATTTCCG	alt_16_fdr	118	115	120	91	116	107	131	103	111	88
TCAATTTTCTTGGAGC	alt_16_fdr	12	5	15	8	12	8	9	6	5	5
CGAGAAATTGACCCGC	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
TATGTACATTTGACTG	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
CTATATCTCTGTATGA	alt_16_fdr	57	51	63	28	39	67	59	46	60	42
GGTTCCTTTATCGACA	alt_16_fdr	24	31	33	28	21	25	21	27	28	17
TCTCGCTGACAGGACC	alt_16_fdr	50	50	52	51	47	47	42	52	36	43
GGACGCCGAATTGGGT	alt_16_fdr	24	17	26	22	20	29	15	24	31	33
TACGATCCAAGTGCAG	alt_16_fdr	39	39	54	24	33	29	26	29	32	45
TCAGCTTTGAGATTCC	alt_16_fdr	23	20	25	23	19	16	25	13	18	19
TCCCAGGACAATAAGT	alt_16_fdr	99	85	97	54	70	90	97	77	78	66
GGGGTAGATCAATTAC	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
ATGCAAGAAGTAGATC	alt_16_fdr	36	43	64	42	60	52	45	44	50	55
TTATGGACCCAGCGAT	alt_16_fdr	45	28	59	27	29	25	50	25	38	57
ACCTGTTTCTGAGTAC	alt_16_fdr	20	35	18	16	38	9	32	16	36	12
TACTCGTTGAGACGAT	alt_16_fdr	48	40	57	35	55	50	43	49	36	34
GCCTTCTAAGCATTTT	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
TCGAAGCACATCAGTC	alt_16_fdr	36	19	34	21	29	26	19	26	24	31
AGTATATTCCAGACTG	alt_16_fdr	117	86	125	99	114	114	106	103	83	92
CCTTGGCTCCTGGTTA	alt_16_fdr	14	12	7	3	19	7	15	11	18	5
ATTTAAAGATTATGAG	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
TCACTTGAGCCGTTCG	alt_16_fdr	5	0	5	3	4	1	2	1	5	2
GCCCTGTAGCTCGTTT	alt_16_fdr	49	30	59	43	31	44	21	33	35	38
GAAACGGCTGAAACCA	alt_16_fdr	70	53	87	57	60	64	40	51	39	59
AAGTACGATTTCTCAA	alt_16_fdr	30	19	38	33	32	27	22	30	31	35
TGACGAACACGCAGTC	alt_16_fdr	4	6	10	2	3	6	9	5	6	2
AGTCGTTTATTTGGGG	alt_16_fdr	23	30	27	24	21	41	23	22	21	38
TCTGCGATTTCAGCCC	alt_16_fdr	147	85	117	80	74	117	94	110	89	123
CTTATCTGCTTCAATT	alt_16_fdr	0	0	0	0	0	0	0	0	0	0
GCACTGAGTGTTGTCC	alt_449_missing	83	93	77	69	103	83	119	47	123	55
CCGCAATTCGAACAAT	alt_449_missing	16	14	14	13	25	18	18	17	29	12
ATTCCGTTTATCTCCA	alt_449_missing	0	0	0	0	0	0	0	0	0	0
GTGTCATGCAAATGTT	alt_449_missing	33	37	33	18	51	30	44	24	39	24
CATAGGTTGCATGAAT	alt_449_missing	54	76	63	49	80	42	92	48	73	42
CATATTTAGTTGTTCA	alt_449_missing	0	0	0	0	0	0	0	0	0	0
TAGCTCCAGAACATGC	alt_449_missing	39	81	57	50	102	40	77	55	114	45
TATCCTGTGGAGAGAG	alt_449_missing	28	38	30	28	38	29	47	28	49	17
CTTAAGTATTCGTATT	alt_449_missing	4	5	2	6	9	5	5	3	5	1
CTGTATAACGTAAGGT	alt_449_missing	0	0	0	0	0	0	0	0	0	0
CTTTGCTCGCATCGGC	alt_449_missing	20	23	23	14	34	13	32	14	25	16
ATATTTCTCAGTGGAA	alt_449_missing	4	13	9	10	12	12	11	8	18	16
TCAATTTACGCCAATG	alt_449_missing	64	104	71	54	106	60	101	64	115	53
AACAATTGTCTCTATC	alt_449_missing	21	31	26	19	33	32	46	22	32	25
GCGCCTCGCATTACCA	alt_449_missing	0	0	0	0	0	0	0	0	0	0
CCGTACGGTATACGCC	alt_449_missing	2	11	2	0	17	1	18	3	9	0
GTGATAAAATATTTTA	alt_449_missing	27	45	33	29	48	31	35	18	46	20
TTATGCCCCTCGCGGT	alt_449_missing	17	34	29	31	32	18	35	24	29	21
TCCTATCCGCTGATTC	alt_449_missing	0	0	0	0	0	0	0	0	0	0
GTTAATTCACCCGGTG	alt_449_missing	14	28	19	20	22	10	32	6	32	9
GTATATTCGGAGGTAG	alt_449_missing	0	0	0	0	0	0	0	0	0	0
AATGCCCTTCACCCTG	alt_449_missing	11	21	17	17	28	18	28	15	21	8
CTATTGGTTTCCCGCG	alt_449_missing	22	36	34	22	35	24	39	24	27	25
CCGACGCAGTTCTGGC	alt_449_missing	48	74	44	58	72	41	89	42	68	31
GTCGCAATATAAACTA	alt_449_missing	13	10	17	8	17	10	20	6	17	11
AGCAGAGACCTCGTTA	alt_449_missing	53	69	46	52	55	41	83	43	58	41
TTACTAGCGTCTTGGA	alt_449_missing	6	11	17	14	7	9	16	7	20	5
GTCGAGCCTGAACCAG	alt_449_missing	17	27	9	12	16	14	12	2	18	8
CATTTTGTATCTTACC	alt_449_missing	0	0	0	0	0	0	0	0	0	0
GTTTTATGTGTGTCCT	alt_449_missing	10	15	6	11	10	14	13	14	15	8
CGGGTTGACTCCGTCT	alt_449_missing	0	0	0	0	0	0	0	0	0	0
AACAAGCTGTAGGACT	alt_449_missing	0	0	0	0	0	0	0	0	0	0
ACATCTGCAGTCGGGT	alt_449_missing	25	42	37	39	41	23	36	39	56	29
CTCGCACATGAGGGAG	alt_449_missing	0	0	0	0	0	0	0	0	0	0
GGTGGTTAGCATTACG	alt_449_missing	0	0	0	0	0	0	0	0	0	0
TGTACTTTATGTGACC	alt_449_missing	19	44	37	44	53	25	51	32	42	27
TACCCCTTGCCCACCA	alt_449_missing	48	93	58	63	113	58	75	55	90	50
GATTTGTTTATAACTA	alt_449_missing	25	24	21	22	18	13	24	18	22	21
GTCACTGTCTGCTCAA	alt_449_missing	0	0	0	0	0	0	0	0	0	0
GACACCCTAAGCAACC	alt_449_missing	0	0	1	0	3	0	1	2	5	0
AGATGAATCCGTGAGT	alt_449_missing	1	6	5	7	11	3	12	6	8	5
CGTTCGGCGCCAATTG	alt_449_missing	27	31	46	23	37	16	43	27	40	33
AGTGTTTCTAAAAAGG	alt_449_missing	60	103	63	75	92	71	117	61	82	56
GCCTCGTGAGGTTGTC	alt_449_missing	0	0	0	0	0	0	0	0	0	0
ATTCTTTTAATTACCA	alt_449_missing	17	32	26	17	33	20	31	18	39	21
TAGGTACTCATTCTTT	alt_449_missing	0	0	0	0	0	0	0	0	0	0
CCGTCCTTTAGCCCAC	alt_449_missing	73	107	87	69	126	54	93	69	89	70
TTGTCAGTCAATGTTT	alt_449_missing	5	10	6	3	6	4	13	6	6	5
GTTGGGGTCTATGGTT	alt_449_missing	26	29	27	19	33	18	32	23	24	12
TAGAACCTGGAAGGAC	alt_5176_missing	36	42	39	39	37	34	45	28	59	48
TCCTAGGCCAGACATG	alt_5176_missing	0	0	0	0	0	0	0	0	0	0
AATGGTTTGAGGTCGC	alt_5176_missing	7	16	11	13	16	11	23	11	13	2
TGGCTGGTACACAGAT	alt_5176_missing	58	54	71	64	67	52	75	59	66	52
CGCCACTTGTCATGTG	alt_5176_missing	0	0	0	0	0	0	0	0	0	0
ACTGTCCAGTTTATAT	alt_5176_missing	19	11	19	28	28	18	25	19	17	18
CACCTCTTACGTATCG	alt_5176_missing	8	11	5	4	9	7	6	3	10	6
ATTCCATTTGCGAATG	alt_5176_missing	132	222	161	133	204	127	207	125	258	142
AGGGGGACTTTACCCG	alt_5176_missing	0	0	0	0	0	0	0	0	0	0
TGCATGCAGCTCTCGA	alt_5176_missing	0	0	0	0	0	0	0	0	0	0
TGCCTCGGGCGCCGGA	alt_5176_missing	0	0	0	0	0	0	0	0	0	0
TGTGGTTTCCGAACCC	alt_5176_missing	8	15	11	9	14	7	18	8	12	5
CAGGCTCCTTCCCGTC	alt_5176_missing	3	19	13	11	17	16	22	9	27	13
GGCTTTTGTGGAACTT	alt_5176_missing	6	4	2	7	5	5	8	7	8	6
AGTTCATCCAGGGGTT	alt_5176_missing	16	41	25	28	37	23	50	24	38	31
ACTCCCTCTAGGTTAG	alt_5176_missing	14	62	24	21	58	14	57	24	74	6
TTGCCGTGGACTCTTT	alt_5176_missing	48	72	67	50	55	57	74	31	85	39
CTCATGAATTGAATCC	alt_5176_missing	0	0	0	0	0	0	0	0	0	0
ACGGGTAGCCCTTGTC	alt_5176_missing	17	27	13	23	25	9	25	10	24	18
CCTTGTCGTTTCATTC	alt_5176_missing	33	33	30	28	37	14	54	27	34	24
AGGGGGACTTAACCGT	alt_5176_missing	0	0	0	0	0	0	0	0	0	0
CACTTGACAGTGCTCC	alt_2369_missing	28	28	23	23	29	14	41	22	31	12
GTGTATTTAGAGTCTC	alt_2369_missing	14	27	14	18	17	15	28	17	22	20
GTGCATACGCGATCTA	alt_2369_missing	4	0	1	1	1	4	0	3	4	1
TCCCCTTATGATCATG	alt_2369_missing	21	28	18	19	33	17	36	13	32	9
CGTGTGGCGCCATGTT	alt_2369_missing	20	26	25	28	17	16	22	20	32	13
TTTTCTCGTTGAAATG	alt_2369_missing	1	3	3	3	2	1	7	1	7	5
AGTTCTAACTTAGTGT	alt_2369_missing	35	60	34	23	60	24	51	20	54	24
CCTTACATATTCTGTG	alt_2369_missing	36	51	51	39	50	47	39	45	61	50
TTGTTCCATGCAAATC	alt_2369_missing	36	48	35	42	38	41	52	38	44	38
CGAATGTCCTTATCTT	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
CCGGTTCGCAACTTCT	alt_2369_missing	9	9	16	11	10	11	9	11	12	6
GGGAACATACAGGAAA	alt_2369_missing	12	19	11	8	13	9	13	12	15	7
TTAAGGCCGCAGAAAG	alt_2369_missing	5	11	7	3	13	4	11	4	15	10
ACCCTTCTTTGCAGTT	alt_2369_missing	4	3	1	0	15	2	9	4	10	3
ATCTCCAAAGCAATTG	alt_2369_missing	8	10	6	6	12	6	13	5	8	7
TGCAATCAGGCACTCG	alt_2369_missing	2	7	3	6	3	6	3	8	10	2
TCTACGACCTTCGTGC	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
GTTAAGCAGAAAAGCT	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
TTGAGGATCCTCGGGT	alt_2369_missing	38	49	29	34	30	25	28	27	29	31
AAACTTTTAGCGCGGT	alt_2369_missing	0	11	18	9	8	5	6	7	9	9
GGCAACTATTGTTTTT	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
GGAGCCAGTCGTCAAC	alt_2369_missing	39	63	50	34	63	36	68	32	73	35
TGGCCCAGTATCGGAA	ref_2369_missing	115	141	154	124	147	94	125	119	155	127
ACTCACACCTCACGAG	ref_2369_missing	65	111	86	61	126	72	103	54	113	68
GAGTATTCCCGGGCCA	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
TTCCACGGCTTGTCCG	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
AGTGTTCTAATAAATG	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
CTCCTCGTTATTCGCA	alt_2369_missing	1	6	5	5	5	5	7	2	7	2
TAGATCGTCATGTAGT	alt_2369_missing	40	53	38	40	51	20	52	40	61	34
ATGCATTATTTGTCAT	alt_2369_missing	44	54	47	48	54	46	58	29	75	45
GAAGTTATTATCCTCT	alt_2369_missing	11	17	8	17	13	6	17	8	9	7
GACCTACTATAGCGGG	alt_2369_missing	43	64	56	43	70	46	66	48	68	37
TTTGGGTAACGATGTG	alt_2369_missing	36	27	34	20	33	25	30	24	48	25
CCTCTGAGGATCCCTG	alt_2369_missing	45	63	52	52	87	38	65	39	70	54
CAATTAAAGACCACAC	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
TTTTCGTTAACTTGTC	alt_2369_missing	14	8	11	18	12	13	18	16	12	11
CTTCAAGTGTTGCGCA	alt_2369_missing	4	2	5	4	10	4	4	6	4	4
AAACTTGTGTGTTCGC	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
GATTTTGCTTTTTTTG	alt_2369_missing	8	18	7	7	7	6	12	14	14	6
TTTAGTCAAAATCTTA	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTTCTATATTTC	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
GTCTCAATCCCCTGTA	alt_2369_missing	8	11	8	10	13	2	9	4	12	4
GCGAGTAGGGCCTGAT	alt_2369_missing	13	13	8	12	13	10	15	10	13	7
CCTATCGCCCTTCGGT	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
TACCGATGGAGTCACT	alt_2369_missing	30	33	47	28	36	33	41	28	51	35
GGGGGTTTGTCACGGC	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
TCGTGGGTTTGTATCG	alt_2369_missing	0	0	0	0	0	0	0	0	0	0
TTCACGCTTCACGAGG	ref_1612_upstream	9	8	16	6	10	11	6	7	6	10
CGGGTTGTGCTGAATT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
TCATATAGAACCTCAC	ref_1612_upstream	20	15	39	24	11	24	17	19	12	16
TGGGGACAGCCTTTAT	ref_1612_upstream	2	2	1	1	1	0	0	0	2	0
GTACTGTATCTTTTAC	ref_1612_upstream	55	22	85	67	43	64	28	44	31	46
TTCTTGCTAGGCTTGT	ref_1612_upstream	46	23	65	56	34	38	40	55	34	45
CGTCTCATCAGTAACT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GTGTAGTAAATGCATC	ref_1612_upstream	62	34	56	52	21	60	33	61	31	32
ATGCCCGTTGTGATTA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GATATATATTTAACTA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CGAAATATGACCTGCT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GGTTAATTGTTGGGCC	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GCGTTCTGTATCTCTC	ref_1612_upstream	142	88	179	139	101	119	107	151	117	127
CATTTTTGAATACGAC	ref_1612_upstream	39	44	109	77	40	67	42	65	48	57
TAACATTGAACTTGAT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CGGAAATTGATACATA	ref_1612_upstream	74	41	91	60	37	61	53	63	36	60
CGTGGAATCAGGATGC	ref_1612_upstream	5	9	11	6	2	7	7	5	3	8
CGGTTTCTACCGACTG	ref_1612_upstream	211	319	265	246	338	194	340	227	375	174
GTCGGCTAGATTCTTT	ref_1612_upstream	10	8	9	8	2	10	5	11	5	5
CGAAGGTCTCAGCTGT	ref_1612_upstream	32	33	52	39	23	45	26	48	29	43
CAGTTAAGTGCGTTCC	ref_1612_upstream	161	124	198	169	121	120	121	148	99	121
CCCCCCCCGGCTGTCC	ref_1612_upstream	54	32	71	62	49	85	45	66	38	66
TCTTTGCGACTTTTTT	ref_1612_upstream	31	13	40	35	16	29	24	36	16	17
CGAGACGGGCTACTAC	ref_1612_upstream	28	12	42	30	25	24	19	30	16	31
TTGGATTTAGCGCGTT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GGTTACTATCTGTCTA	ref_1612_upstream	6	4	2	1	3	4	5	5	2	9
CCCAAGGCTAAGCGAT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
TACGAATGACGTGCCT	ref_1612_upstream	24	17	42	41	14	37	10	26	12	25
CTCTTCTTGCCTCATT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GACACGACGGGCCTAT	ref_1612_upstream	1	4	10	7	2	8	2	4	5	11
GCTTTACCTGTATTGG	ref_1612_upstream	64	41	86	60	50	48	49	54	49	50
CTGGGTTTTTCCGCTA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTGTCTTCGAGTA	ref_1612_upstream	40	20	34	21	12	17	18	27	20	23
GGGTACGTCGCCGCAA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTATCCACCGGAA	ref_1612_upstream	53	34	45	40	31	47	27	37	28	39
TAGCCTCATTGTCGTG	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GGCCAACCTCGACCTT	ref_1612_upstream	20	11	34	15	15	22	16	15	16	22
CTATGGCACCATGGAA	ref_1612_upstream	7	4	12	7	5	1	7	12	6	10
CACCGTAATATAATCC	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
TATTTGGTTTTTGTCT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
TAGCCTGCGGGATATT	ref_1612_upstream	68	47	91	76	48	68	46	60	37	65
AAGTACGAGGCATGCC	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAAGTGCGTAAAT	ref_1612_upstream	6	2	5	7	1	10	4	13	6	3
GCGCCTTGATATGTCG	ref_1612_upstream	5	6	11	7	2	5	9	5	0	5
TCTTGTACGAGTTACC	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
AACGTCTAATCCGTTT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GGGCCTTGGCCGCTGC	ref_1612_upstream	25	15	20	20	13	19	16	22	14	20
ACTTGTTTCAAGCTTT	ref_1612_upstream	43	39	57	52	24	50	22	44	38	38
GAGTGAACACCGTCTT	ref_1612_upstream	75	59	96	72	62	84	60	84	54	61
GCTTAAATCCAGGTCG	ref_1612_upstream	23	12	31	25	17	28	21	21	13	16
TCGTTCAGCGTTCGCA	ref_1612_upstream	26	14	26	32	18	26	28	20	20	20
CCCTCGCCCTTTTGTC	ref_1612_upstream	16	4	20	18	14	12	10	18	14	12
GCCTCCGGGTTCGAAA	ref_1612_upstream	94	76	115	105	79	82	70	106	68	92
AAGTAGGTGCACTCTT	ref_1612_upstream	102	69	125	100	91	86	65	113	92	91
ACGCATATTCTGATTC	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GCTTATTTTTACTGTA	ref_1612_upstream	0	0	1	0	1	0	0	1	1	0
CAGGGTGTGGGGCAAA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTTAAACATCTTAGAC	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GTCGCTCTAGAACAGT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CATCTTGGACCACGTA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
AATGCTCCGGGGGCAT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGAGAGCTTTATA	ref_1612_upstream	5	8	6	5	11	4	4	8	7	6
GGGTCATGGGCTTATT	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
GCACGCGATTTGTAAT	ref_1612_upstream	263	172	317	267	112	242	126	252	164	245
AAATTAAAGTGGGCCC	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
ATTCATTTCCCGAGAG	ref_1612_upstream	95	51	118	91	57	89	47	82	52	91
ACCTTTTCTGACTTCC	ref_1612_upstream	134	51	164	186	59	138	94	150	78	114
GCCTTTGGCACCAACT	ref_1612_upstream	80	37	91	89	50	90	59	84	80	69
CCTCCATATGTACTCC	ref_1612_upstream	40	50	61	57	69	45	69	50	75	42
GAAGTCATATTCCCTA	ref_1612_upstream	64	50	86	66	39	56	58	51	57	61
TAGGGTCTCTACACTA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
AGCGCTTTTAATCTGG	ref_1612_upstream	487	275	591	510	281	493	279	453	295	395
TCGCGTCTACCAAAGC	ref_1612_upstream	61	40	64	65	35	49	35	60	46	56
AGATGCTTAGTCGTTG	ref_1612_upstream	7	8	12	11	9	7	4	4	5	9
CTTCAATGGCCCATAA	ref_1612_upstream	24	12	21	30	16	16	10	22	12	20
TGTGTTCCGCGAGTGC	ref_1612_upstream	130	65	119	118	63	113	79	70	89	94
AGGGAACAGGTCAAAT	ref_1612_upstream	6	10	10	13	5	18	10	8	7	6
CTGTGACTGCACGTCA	ref_1612_upstream	33	21	46	40	28	33	17	29	35	33
TTTTTTTGATTCAGCA	ref_1612_upstream	76	45	93	94	49	89	58	68	62	61
TATCGGCGACAGTCTA	ref_1612_upstream	26	16	26	16	18	36	15	25	17	12
TTGTTTTTTTGACTGT	ref_1612_upstream	48	26	59	59	37	65	32	47	41	59
CGTCCTTTGTTCCGCG	ref_1612_upstream	46	27	59	51	34	39	32	46	41	39
TGGGTCTCAAGCACGC	ref_1612_upstream	56	22	73	73	39	58	35	57	33	65
AAGCGACACGACCGAT	ref_1612_upstream	21	15	22	14	9	14	13	23	20	11
AACTCGATCTGTGCAT	ref_1612_upstream	32	24	39	39	27	29	19	28	23	22
GTGATGTGTGTACACG	ref_1612_upstream	21	10	24	33	18	31	8	15	7	11
CTTTTCCCTGTCGGGG	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CAATACTGTATTTACG	ref_1612_upstream	42	25	46	50	24	35	30	33	23	30
AGCGCGGCTCGGTTCC	ref_1612_upstream	3	0	1	0	1	0	2	2	3	0
ATACAACAAGTAATCC	ref_1612_upstream	38	21	60	45	30	35	26	33	22	30
TACAGTCCTGTTTGTG	ref_1612_upstream	7	12	20	11	8	13	7	16	6	16
CATCTAAAACTGCGAG	ref_1612_upstream	151	103	185	180	96	163	109	145	99	141
GCGAGGAATGTATCAC	ref_1612_upstream	42	24	57	47	27	33	34	49	27	49
TGTGTTCACCGGCATT	ref_1612_upstream	80	35	96	69	41	78	50	64	45	66
GAAACACATAGCTTGT	ref_1612_upstream	19	11	29	35	17	37	12	20	26	34
TGTTTATACCTATAAC	ref_1612_upstream	85	44	93	71	55	79	45	90	62	72
TGCTTGTCTGCCGGGC	ref_1612_upstream	30	17	28	28	24	28	20	31	27	32
CACTCGTGGGGCTTTC	ref_1612_upstream	48	47	71	73	27	54	43	67	39	58
AGTCAAAGCTGTTTAG	ref_1612_upstream	15	12	20	13	10	14	7	19	14	11
CATGAGCATTAGTTTA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CATTGACCCTCCAGTA	ref_1612_upstream	0	0	0	0	0	0	0	0	0	0
CATTCTCTCTATCAAG	ref_1612_upstream	79	66	105	92	70	72	57	99	56	71
TTTCGTCCTGGGTCTA	ref_1612_upstream	22	22	32	33	9	21	12	21	22	17
GTCATTCATAGGATGT	ref_1612_upstream	17	12	25	12	7	15	4	21	8	13
TGCGGCCAACGGCACT	alt_5893_new	13	52	13	19	37	27	49	18	60	13
GTGCCTATGGCCCCTA	alt_5893_new	94	152	84	67	108	70	172	63	145	67
TGTATGCTCGTTCCAG	alt_5893_new	12	17	12	5	15	15	12	16	18	5
TTTTTACCGCCTAAGT	alt_5893_new	13	14	9	8	18	5	13	14	18	6
TAACTTCTATTTACGA	ref_5893_new	153	223	188	147	267	148	254	144	258	144
GAGTTGTATTTTTTAC	alt_5893_new	6	23	9	4	14	8	17	13	20	11
CTCTTGTGTCTTTTGT	alt_5893_new	41	62	63	53	76	27	79	43	54	32
GATCGTGGTTTTGCCG	alt_5893_new	11	41	30	16	34	28	46	14	36	20
CATCACATTAGATCTG	alt_5893_new	37	62	38	43	69	33	93	35	85	31
GGGTGATATAGTCTTG	alt_5893_new	16	15	4	5	16	15	17	18	26	5
CTGAAAAGTCTTCCTT	alt_5893_new	3	12	11	3	6	9	6	6	12	10
GGTGAGTCAATTAGGT	alt_5893_new	0	0	0	0	0	0	0	0	0	0
GCGGGCGAACATCGAC	alt_5893_new	0	0	0	0	0	0	0	0	0	0
TCAAAAATTCCGGTTA	alt_5893_new	8	28	22	14	29	24	33	20	27	12
GTTGTGAGTGGTCAGC	alt_5893_new	11	22	10	12	15	13	17	6	18	8
TTGCCGCCGTCGCTGT	alt_5893_new	55	100	60	60	88	36	96	64	107	51
CTCGTTTTTCGCAGGT	alt_5893_new	14	24	24	17	30	10	40	14	23	20
AAGACCATGGTCTGGC	alt_5893_new	0	0	0	0	0	0	0	0	0	0
GAGTTTGACGGCTAGC	alt_5893_new	0	0	0	0	0	0	0	0	0	0
GGCTGTTTACAACGTA	alt_5893_new	5	10	5	11	9	15	6	8	7	9
GGAGAAACTTGTGTCG	alt_5893_new	0	0	0	0	0	0	0	0	0	0
GTGCGCGCGGCCATTT	alt_5893_new	10	12	15	9	13	11	21	18	21	7
TTAGCCCGCGAGGTTT	alt_5893_new	1	5	10	4	16	6	15	7	9	7
GCCTTTAATTCGGGAA	alt_5893_new	14	31	24	17	23	16	46	16	30	14
GGACCGAACAAAGCGC	alt_5893_new	11	18	12	7	28	2	26	11	25	15
AACACTTTGGTGCTCG	alt_5893_new	56	88	58	72	94	43	85	53	100	51
ACGGCAGTTCGGAGCG	alt_5893_new	2	1	0	3	6	2	7	2	6	1
AAGAGGAAATTATTCA	alt_5893_new	0	0	0	0	0	0	0	0	0	0
TCCTCATCTGCCCGTA	alt_5893_new	10	34	13	13	37	9	30	18	31	15
CTCATCTACCATTGTT	alt_5893_new	13	36	15	16	33	18	33	6	37	19
GCCCACTTGCGGATGG	alt_5893_new	7	12	6	9	12	14	10	4	11	8
ACTCTATTTACGCGGT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGTTGGTTAAAGA	alt_588_reverse	3	1	3	1	4	2	1	3	2	4
GGCCTTAATATTGTCA	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGTTACGGTATC	alt_588_reverse	7	11	12	9	9	6	9	14	24	9
CGTCTCTTGTTGTCTA	alt_588_reverse	46	64	66	49	46	66	57	45	59	35
AGATTAGTTGCTTTTC	alt_588_reverse	35	34	34	29	45	27	28	23	38	15
CACTGCGGGTAATATT	alt_588_reverse	9	8	5	4	5	9	8	13	6	7
CCCGTCCCGTAAGTTT	alt_588_reverse	16	69	32	38	71	25	69	22	74	20
CCTTGTCTGCTTTAAG	alt_588_reverse	23	45	38	30	27	33	48	26	46	41
CCTCGTGGGTGACTTG	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CCACGCGCTTCACGCT	alt_588_reverse	23	37	18	19	22	21	21	10	27	19
TCATAGGCTTATAATG	alt_588_reverse	7	21	14	10	13	12	14	13	17	10
TTCCGACATTAGCTCT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TGGCAGGGTGCGCCGG	alt_588_reverse	13	12	12	8	13	7	14	13	8	7
TGTGTAAATCCGGCCT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TGATGTCCATTCACTT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CACTTAGCTGACTTTT	alt_588_reverse	6	15	4	7	6	2	12	3	12	6
GATTACGGGTGACCGG	alt_588_reverse	15	17	10	16	15	9	27	10	31	25
CTTACTAACTACTATA	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
GCTCAGCTCTTTATCG	alt_588_reverse	21	29	27	26	29	18	34	12	31	13
TGCATGGCAGAGGTGG	alt_588_reverse	16	33	37	29	47	28	38	25	36	24
TAAATACATGTTTGAG	alt_588_reverse	85	131	146	119	130	80	147	90	136	99
CCGTGTCCACGACCGG	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
GATTATTCGCTTAAAT	alt_588_reverse	23	40	47	22	54	24	46	23	47	31
TATTCAAGTCATAGTG	alt_588_reverse	17	21	28	18	23	16	20	9	27	13
GATAGGTTTAGCAAGA	alt_588_reverse	2	3	6	6	4	4	2	2	8	6
TATGGTCCCAACAAAT	alt_588_reverse	19	22	30	26	26	28	17	13	28	19
ATATCCATAAAGTTCG	alt_588_reverse	15	16	13	8	14	9	19	12	19	15
GGTTCGCCGAGGATTG	alt_588_reverse	89	128	114	85	128	72	134	90	149	85
CCGTTCCGCCTCATGA	alt_588_reverse	48	54	51	54	52	45	61	53	67	33
GCGCCCCTCCCTTTTG	alt_588_reverse	20	26	24	15	26	13	15	25	31	20
CTTTAGGCTCTAAGGA	alt_588_reverse	39	46	39	37	39	21	47	23	55	37
ACATGAAAAGCTAATT	alt_588_reverse	49	63	55	36	52	46	52	47	47	41
CTAGGTTATGACACGC	alt_588_reverse	19	16	28	12	28	23	37	17	37	20
CATCATTAACCATATC	alt_588_reverse	40	42	52	33	57	45	48	45	66	42
GATTCAAAATGCGGTT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CATGCCACGCTAAGAA	alt_588_reverse	5	14	14	15	25	9	20	14	20	14
GAAGTTTTGGAGTTAC	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CCTGTTGGTGGTAAGG	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CTGGATTCACAGCGCG	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
GCTTGACATCGGTACT	alt_588_reverse	19	30	21	21	26	13	20	30	23	14
CCCTAGAAAACGCGGT	alt_588_reverse	4	7	8	4	4	3	3	3	3	6
TTAGCACTTGGTCATC	alt_588_reverse	15	23	16	10	23	10	26	15	20	7
AAGTCACTCCTTAGCT	alt_588_reverse	4	14	5	4	10	5	16	9	21	4
CTATGACCCAGTTCTC	alt_588_reverse	5	3	6	5	4	4	9	6	9	4
TCCGCTGGGTGCTAAC	alt_588_reverse	20	41	17	26	40	27	30	17	33	26
CGAATTTAGTGTAGCT	alt_588_reverse	159	149	194	156	178	140	193	125	178	152
CTCGTACTATTTCGCA	alt_588_reverse	13	21	18	18	30	21	27	26	32	29
ATACTTAACTGTTCGT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTTGGATAATCCA	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
GTACTTCTCCTTGCCT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGATTGTTGTGCA	alt_588_reverse	60	66	54	42	72	47	65	49	68	39
TTCATCTGTCGTGTGA	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TCCGGTGCGGGCTTAT	alt_588_reverse	11	19	19	11	15	11	29	13	28	13
CTTGACGCAGTGTGGT	alt_588_reverse	44	59	53	54	60	45	55	44	73	38
ATGCTCGCGCCGACCT	alt_588_reverse	19	34	35	32	40	20	39	24	36	18
GCCACCGGACTGTTTA	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCCTCTTCAAAGC	alt_588_reverse	31	26	33	39	35	26	43	33	41	36
TTGAATGGTTGGATGT	alt_588_reverse	4	5	0	1	2	0	0	0	4	3
TGATAGCGCGTTCACT	alt_588_reverse	13	23	22	9	21	8	13	11	12	12
TTGTGTGAACAGCATG	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TTGCACCAATGGTTGA	alt_588_reverse	17	18	10	12	14	9	9	4	17	10
ACGGTTATTCCTCATG	alt_588_reverse	12	13	12	11	19	13	10	10	14	7
GCTCGGTTCGTCACGA	alt_588_reverse	27	59	28	28	32	25	28	20	44	25
TACCTGGGCTATGGTA	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CTGATTTGCTACACTG	alt_588_reverse	10	17	14	13	34	15	22	24	25	12
TTGGTTGCATTTCTTC	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
AAATAAGTGCGTGATC	alt_588_reverse	20	31	28	21	49	20	27	28	53	13
AAGCAGCCACTCCCGC	alt_588_reverse	23	98	38	26	95	27	104	15	113	18
CACCAGGCCAGCATAT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCTAGCTTCTCCT	alt_588_reverse	1	2	2	2	0	2	2	0	6	1
AAATCCGGTCCGCGGT	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTAACCTGGTTTG	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
TACATATCTTAGAAGG	alt_588_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTCAACCCGCGGA	alt_2040_fdr	34	17	46	34	20	31	18	24	18	24
TCAGTTTCTATTTATA	alt_2040_fdr	7	8	10	10	11	11	5	15	10	20
GCCTCGATGTAAGCGC	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
CCCCCGGGCGTAGCTC	alt_2040_fdr	5	8	11	9	8	12	13	10	7	8
CTGAGGTCTACTATGT	alt_2040_fdr	8	16	12	15	10	16	9	9	20	7
GAGCTCAGGTACCCGC	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
ATGAGCGTTGGGATAA	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTTACGAGGTAGA	alt_2040_fdr	66	48	64	84	42	74	41	60	48	62
GCAATTTAGTGGTGTA	alt_2040_fdr	34	25	44	30	22	35	29	24	23	34
TATTCGTTTCATATGT	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
CCTAAGCGCCGTTAGA	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGTAGACGGGCCC	alt_2040_fdr	15	15	16	15	15	17	10	11	5	13
CTACCAAATGTGTTTT	alt_2040_fdr	0	1	1	0	2	2	1	0	0	1
GTATCTTCATGCGTGA	alt_2040_fdr	148	122	191	150	99	153	103	165	105	137
TGTGTTTTGAGGTCAT	alt_2040_fdr	172	122	194	177	133	166	148	136	131	146
ACTATGTTTTATGCGT	alt_2040_fdr	74	50	64	55	41	47	57	43	42	32
CAAAACCATGAGTGAC	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
AATGGGCGGAGTTGAA	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
GCAGCCTCGGTTAATT	alt_2040_fdr	6	11	15	10	16	10	12	28	15	14
TTTTACTCATGGACCG	alt_2040_fdr	77	68	108	87	48	100	70	69	79	79
ACGTGGTCCGCCTCAT	alt_2040_fdr	183	119	215	172	104	158	136	155	172	131
CGGGTCCCCCCGTAAC	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
ACTGGCTTTGTCACAC	alt_2040_fdr	12	13	8	15	10	8	14	16	13	5
CTTATCTTTCGAAAAC	alt_2040_fdr	15	10	21	17	1	18	13	17	12	13
CGGCTCAGATGAACCC	alt_2040_fdr	92	61	147	84	61	92	72	108	67	77
AGTTTATCTCTCAATC	alt_2040_fdr	6	14	10	17	7	11	4	15	7	9
GTGGTTATGTCATGGA	alt_2040_fdr	31	28	43	18	18	25	25	29	33	20
CGACTCATCTTTACTA	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
CTGTCTAGGAGGTAGT	alt_2040_fdr	72	54	104	74	63	64	48	74	71	65
GCCTCAATGTAAGCGC	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAGCATAGGATGA	alt_2040_fdr	29	23	31	25	13	19	16	37	17	27
GTCTAATCACTTAGCA	alt_2040_fdr	0	0	0	0	0	0	0	0	0	0
GGAATCGATAGTGTGC	alt_2040_fdr	32	15	20	26	17	14	14	21	16	21
TAGGCACCATGCCTGT	alt_2040_fdr	14	2	11	10	7	9	3	5	3	7
ACTGCCTACGCATAAT	alt_2040_fdr	24	20	24	21	19	17	10	16	17	23
TGTCTAACTCCTTACT	alt_2040_fdr	55	31	69	55	46	63	33	47	50	60
AAGGATCCCGTGTACC	alt_2040_fdr	7	6	12	5	6	8	7	8	5	9
GCCCGTTTGCGCGTTT	alt_2040_fdr	11	8	12	7	8	14	13	9	8	9
CTTATCTTTACTGGTT	alt_2040_fdr	90	59	126	91	77	110	59	103	70	111
TCGGTACATAGCTCTC	ref_4301_missing	8	10	7	10	25	1	17	5	28	6
ATTTTGATACCCTGCA	ref_4301_missing	55	102	52	51	89	35	111	46	102	45
GACACTTGTAATTCTC	ref_4301_missing	174	202	258	199	192	183	195	197	214	182
TCCTTGGATAGCGGTA	ref_4301_missing	9	21	11	20	15	20	23	14	15	11
ATTTCAAACTTTTCCG	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
GGTTACCGTGACTGAA	ref_4301_missing	40	40	57	41	57	31	38	23	52	46
CTCCAGATGAGTGGTT	ref_4301_missing	47	52	60	46	51	55	81	41	49	36
TGGAATGAAATTAAGT	ref_4301_missing	13	9	12	16	15	5	16	10	18	9
TTATACGCCCATCACG	ref_4301_missing	38	40	42	31	47	24	51	29	54	29
CCGTGGCGATCGTCTA	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
TGGGCCGGGTGATCGA	ref_4301_missing	112	97	124	118	148	83	123	104	126	100
AAAAATCTGGTGCAAC	ref_4301_missing	18	21	26	9	16	13	27	12	29	13
GTCTCCCGGGTTTTGC	ref_4301_missing	55	85	41	63	70	51	89	50	90	40
GGTTTGACTCCTTTCG	ref_4301_missing	11	19	12	13	15	10	6	7	11	9
ACCGATTTTAGCTCGT	ref_4301_missing	3	7	7	5	14	8	9	2	18	4
GGGCAGTCTTTTACCA	ref_4301_missing	9	8	19	14	26	17	15	7	7	7
GTTCCACTATGACCCT	ref_4301_missing	38	47	51	50	77	36	83	30	62	28
TGCCCTTCTCGTCACC	ref_4301_missing	45	37	76	57	62	48	41	55	50	42
TTGCGTTACCTAGCAC	ref_4301_missing	94	142	117	88	117	103	148	100	143	58
AACGTATGTCCCTCTG	ref_4301_missing	18	11	22	12	19	18	18	15	29	14
CGACGTGGTGTCCATC	ref_4301_missing	17	33	31	33	44	16	43	24	37	22
ATCTCCATTGCTCCTT	ref_4301_missing	9	12	15	14	20	18	9	19	18	10
TATGCCAGTTTACGCT	ref_4301_missing	14	14	13	7	11	3	13	10	14	5
TAGATTGTTACATTTG	ref_4301_missing	45	54	51	41	61	54	73	56	59	39
TTCGCTTCTGATGCGA	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
GTCTGTGTACTGGGGT	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
GTATTGATTCCTTGTC	ref_4301_missing	16	26	27	11	29	10	31	15	24	14
AGGTTTCCGATCTAAT	ref_4301_missing	2	3	0	4	1	1	4	1	0	1
CTGGAATGGCTGCCAG	ref_4301_missing	33	33	36	42	43	29	28	32	40	32
GGTATATCTCGATAGC	ref_4301_missing	1	1	3	1	4	2	5	3	2	5
GGCGCGGCATGTAAGT	ref_4301_missing	63	40	44	50	41	46	63	37	55	50
GAAATAAGGATACATC	ref_4301_missing	26	26	25	28	25	21	29	18	28	21
TTAACACCTGTTGCTA	ref_4301_missing	165	269	248	213	307	195	322	202	345	195
CATCACAAAATCCCTC	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
GGTTAGGGTGTTTACG	ref_4301_missing	13	20	22	25	18	18	19	13	18	13
ATTGGGGGGTTTGCCT	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
GTGGTCTGTGCGAGTC	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
TTATCCGGTATACATT	ref_4301_missing	16	24	22	22	33	23	25	18	29	15
CTGTTCTGTTTTACTG	ref_4301_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTATACTACACG	ref_4301_missing	107	124	114	100	142	97	90	87	104	94
CCATGTTTTGACAAGT	ref_4301_missing	25	40	34	36	66	31	51	32	52	28
CTTATGCGGTTTGCTT	ref_4222_missing	46	81	52	40	79	38	54	33	83	42
GGAGAAGACATACACC	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TGGTATTGGAACATGA	ref_4222_missing	3	8	4	4	5	7	12	3	8	2
TACGATTTGTCCACAG	ref_4222_missing	41	67	64	44	91	39	99	34	104	41
CTTTCACTCGTCATTT	ref_4222_missing	25	70	27	28	66	36	79	26	58	16
CCCCTGTTGGTTTACA	ref_4222_missing	12	17	15	13	22	9	26	6	25	10
TAAAGGCTCCGGGGGA	ref_4222_missing	6	15	8	3	5	4	7	2	11	7
AAGTCCATTATGGCTC	ref_4222_missing	0	0	1	0	0	0	1	2	2	0
CTATTTGTGTCACTGA	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TGCCGGTCTTAATCAA	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
ACACGTTGACAATGAG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
CATGACACCCAGACGG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TACATGCGTACTTGGC	ref_4222_missing	3	1	1	2	6	4	5	4	3	1
TTGGTGTCTTAGATCT	ref_4222_missing	3	21	7	9	11	2	24	10	19	3
ATATCATCTAGTTCAA	ref_4222_missing	14	22	9	13	29	9	32	12	31	18
AAATTCCGAACACGCA	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
CCGGGCTTTGAATACC	ref_4222_missing	5	10	9	1	14	5	12	12	5	3
ACCTCAGCTTTTTCCG	ref_4222_missing	16	30	26	20	41	17	36	18	35	15
TACATTTTATCCGAGC	ref_4222_missing	133	229	191	135	216	132	207	138	228	127
GGCAAGAAAGCAGGGT	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TCTGACGCTACTGCCA	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
GGTTAGCAACTGATTC	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
CGATCATCCTGTCAGT	ref_4222_missing	6	6	20	14	16	14	18	9	11	8
CAGTGTCTACATTGTG	ref_4222_missing	17	26	15	9	25	12	29	13	37	13
TAACATAGGTCCCGGT	ref_4222_missing	33	37	30	30	34	29	61	27	63	32
CACTCCTACCTGGAAT	ref_4222_missing	2	7	1	2	8	2	9	3	5	1
GTTCTGGAGATTCGCA	ref_4222_missing	4	3	3	3	7	1	4	1	6	1
TGTTTGACATGTTTAA	ref_4222_missing	19	32	14	19	18	14	21	18	40	14
TTTGGTCGGCTCGCCG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
AGCTATCGGTTATTAC	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
GCCTAGCTACGGACAT	ref_4222_missing	31	33	27	19	60	18	43	19	50	18
ATAGTATTAGCGAGTT	ref_4222_missing	7	5	10	3	17	5	6	4	6	1
TATGATCCGGTCGTCG	ref_4222_missing	26	51	16	12	35	12	53	22	57	15
GTAATTCAGAATTGCG	ref_4222_missing	26	37	26	15	40	18	37	19	26	25
CTTTGTCTTCTCGCTT	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
CACGGGCTATTTTTTA	ref_4222_missing	69	129	95	91	109	72	115	67	132	54
CGGTCGCTTACTGTGT	ref_4222_missing	7	25	12	9	13	7	20	9	28	7
GGCGCGGTCAGGGGCA	ref_4222_missing	3	11	7	5	16	4	12	11	10	8
AAGCTTGGGCTCCCAT	ref_4222_missing	19	35	14	27	49	19	44	12	42	15
GCCAAAGTCTTATGCC	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TGTAGTCTTATCTTCG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
CTTGGTGCACCACGTG	ref_4222_missing	15	48	32	19	46	15	43	20	42	14
GCTTCTTGATGCTCAT	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TGCGTTGTGGACCGGA	ref_4222_missing	12	15	8	22	15	12	19	12	19	6
CAATGGGAGTGCGTAC	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TCTTATGCTCTTCTAG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
CTATTATGACTCCGCT	ref_4222_missing	7	42	15	10	26	22	22	19	23	11
TTCTTCCATTAGCAAC	ref_4222_missing	6	5	9	3	4	3	2	0	5	2
TGTTGGCTACCGTTTG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TTTCCTATTTTTGGTC	ref_4222_missing	1	0	0	0	0	0	0	1	2	0
TCTCCGGTGCCGATCT	ref_4222_missing	15	32	19	15	36	11	28	13	27	17
TCAAGCGCAAGACATC	ref_4222_missing	21	41	24	22	37	18	28	12	37	21
GAGCCGACGGGAAGTG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
GTATACTTAGCTGAGT	ref_4222_missing	70	220	124	96	247	88	247	81	290	94
GATCAACGACTTTTTG	ref_4222_missing	14	14	16	11	26	12	19	11	20	9
TCTGTCTACAGCCAGG	ref_4222_missing	0	0	0	0	0	0	0	0	0	0
TTAAGTTCGTGGGTTT	ref_4222_missing	2	4	1	2	5	2	6	1	4	2
ACTGCTTAGCTGCCAC	ref_1903_fdr	59	25	75	52	32	46	35	59	47	61
TCGTCGCGAGGATATG	ref_1903_fdr	53	21	49	32	35	27	33	44	30	22
TACTTTCCTGTTACTG	ref_1903_fdr	65	58	54	60	45	66	62	60	77	60
CCTTATCATATGATTG	ref_1903_fdr	163	84	132	135	84	155	102	130	82	129
TTCGTAATGATAACAC	ref_1903_fdr	11	13	16	14	13	16	12	15	10	19
TTACTACTTCTCTTTT	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCCGTGCGGCCGG	ref_1903_fdr	43	28	44	47	23	35	17	35	28	39
CTCCTGCTTGGTACTG	ref_1903_fdr	43	44	47	38	42	30	46	51	43	47
TTATATGCGGTGCTGA	alt_1903_fdr	147	71	150	119	68	112	83	110	95	117
TAATTCTGTTTGCTCG	ref_1903_fdr	33	17	41	26	17	24	15	26	27	18
CGTACTTGGGTTATTT	ref_1903_fdr	499	298	565	422	314	470	350	393	330	441
TATTCCGTATATATCA	ref_1903_fdr	51	29	57	39	31	52	29	46	34	42
GGTTGTTGGCGGGAAC	ref_1903_fdr	46	24	54	58	24	38	19	40	22	31
TTGGCAATTGCATAAA	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGTCCAAGCTCAA	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGCCGTAAGGCCT	ref_1903_fdr	24	18	23	19	19	24	16	16	16	16
AAACTCACTTTAGTTT	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
CTTACTTGACACTTAC	ref_1903_fdr	10	11	21	11	5	9	12	14	10	9
TCTGGGTTCATGATAT	ref_1903_fdr	11	14	13	10	10	17	13	15	5	12
CTTTCTTTACAGACCG	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
TGAACGGCTATGCATC	ref_1903_fdr	33	28	34	42	26	39	24	28	29	42
ATTGGTTGCGGGCATG	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTTGACTGCGCCC	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
ACACAGGCCTGCCGCT	ref_1903_fdr	255	119	261	194	158	214	115	227	119	227
TCATTGCTGGCTTTTA	ref_1903_fdr	11	8	19	19	10	14	14	9	15	18
GATACTGCCTTCAGGT	ref_1903_fdr	13	10	21	15	8	15	10	15	8	18
TGATAAAATATTCCCT	ref_1903_fdr	0	0	1	1	1	1	0	2	0	0
ATTCTCGCATGGGCAC	ref_1903_fdr	159	74	158	131	77	120	112	139	100	110
CCGGTGTTTCCCAAGT	ref_1903_fdr	197	179	274	211	172	197	177	209	198	232
ATAACTTGTTGAGTAG	ref_1903_fdr	678	433	759	551	398	585	491	562	560	569
ACTGGTACCCTTTGCA	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
TTATGGTTGATGAAGC	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCTCTATATGGTT	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
GGTATTATGATCTATT	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTGTGTCCCTCTT	ref_1903_fdr	8	3	12	8	5	18	3	5	11	6
ATAAATGCTTGTCTCC	ref_1903_fdr	51	37	59	38	37	70	32	39	32	60
CTGGGACGCATTGGTT	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
AACTTCTCCCTGGCTC	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
CTGATTCTTATTGCAG	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
TTTCCGCAACTGCATA	alt_1903_fdr	66	39	97	71	43	64	47	59	31	72
CGATACTGATTGGACT	ref_1903_fdr	21	27	46	18	20	28	20	12	19	26
CGGTCTTTCTACCCTA	ref_1903_fdr	0	2	1	4	3	0	1	3	1	1
TATACGTCTCAGGTTC	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTAATCCTATTGT	ref_1903_fdr	5	3	6	6	9	5	5	2	3	6
CCCACGTCTTCCATTT	ref_1903_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGTCCTGCCGCCC	alt_1269_RC	4	5	5	3	3	7	9	2	7	3
TGTGAGCGTTGTGCGA	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
ATGTACTATATTGAGA	alt_1269_RC	21	58	40	28	65	24	44	39	61	29
CATACGGGCAAAACCA	alt_1269_RC	23	35	37	17	44	13	32	14	43	10
GCCTGGATATAGATAT	alt_1269_RC	2	0	0	1	0	0	0	1	2	0
GTTCGTTTGATCATTC	alt_1269_RC	3	4	2	1	3	2	6	4	1	1
GGCCGGCTAAAACTGT	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
CACAGTCCATCTTGTG	alt_1269_RC	7	14	12	2	10	7	13	4	17	3
TACTGTTAGTAAGCGT	alt_1269_RC	35	51	34	36	45	27	53	24	63	22
AGGTTTATGATCGTCG	alt_1269_RC	27	23	31	18	37	17	37	19	27	10
TGCGGGTGCATGGGCG	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
ACTCAGACCAAGTTTT	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
GCTCCTGGCTATCATA	ref_1269_RC	56	56	49	43	71	35	69	41	77	41
GCTACAATTCTTTTGG	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
CTCAGTAGCACCGTCA	alt_1269_RC	10	8	4	7	13	9	16	5	10	8
ACAATTGTATACATTT	alt_1269_RC	29	33	36	28	50	28	38	25	48	16
GATACGTTCTTAGCTA	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
ATGATAGTGGACAGCT	alt_1269_RC	67	99	104	65	108	64	113	66	127	72
CGGGTTCCTTCAGTCG	alt_1269_RC	10	16	6	5	13	7	28	9	12	6
ATGCCATGTCAGCATT	alt_1269_RC	26	37	33	28	32	20	40	24	45	21
TGCTATTGGCTAAAAT	alt_1269_RC	15	13	17	9	16	10	19	7	15	9
TTATATCGACGGGTAT	alt_1269_RC	23	42	46	36	46	32	45	38	35	42
ACTATACAGCCGGAAA	alt_1269_RC	1	2	2	0	1	0	2	1	3	1
GAACCATGCCACACAA	alt_1269_RC	17	15	21	16	28	11	24	21	28	22
TAAATGTTAGCCGGTA	alt_1269_RC	107	117	109	81	104	87	135	71	147	77
AGCGGTCGCATGGACT	alt_1269_RC	51	72	59	62	68	62	66	42	75	49
TTCCCGTTACCCCTGG	alt_1269_RC	21	48	39	13	54	27	57	30	42	27
TTATGTCGCTAGATCT	alt_1269_RC	15	11	14	14	16	15	26	12	27	9
TACGCTCATTCTCGCC	alt_1269_RC	1	0	0	0	0	0	0	0	0	0
CTGTGTACCATACTTA	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
ACGAAGTTTCTCTGGA	alt_1269_RC	6	9	4	2	13	7	13	7	8	7
CATTTTAACTTTCATA	alt_1269_RC	50	58	49	38	43	33	54	46	68	35
GGGCGCGCCATACCTA	alt_1269_RC	1	8	0	2	3	4	8	2	3	2
CTATCATTTGGCTGCC	alt_1269_RC	128	186	150	123	191	132	199	113	205	127
TCAGATTAGCCTGGTC	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
CACATTGTGGAGTAAC	alt_1269_RC	7	26	18	12	24	13	21	15	29	7
TTGCGCGTGATGCCAA	alt_1269_RC	8	17	16	10	10	13	12	4	20	4
CTCTGACTTATTAATC	ref_1269_RC	44	89	66	53	96	50	78	63	95	56
TGGTTTACGTGTTAGT	alt_1269_RC	18	31	18	13	35	18	24	15	32	12
ATTTTGGCCTTGGTCT	alt_1269_RC	32	22	40	28	24	25	35	20	36	22
TGTTTAATGTCGCGGT	alt_1269_RC	38	33	45	24	53	26	54	32	43	44
CTGCTCTTTATCCTAC	alt_1269_RC	19	43	34	30	52	26	30	28	41	21
ATTTTTCATGGAGAAG	alt_1269_RC	14	22	14	21	34	11	25	18	43	17
ATTCATGGGTAGATTT	alt_1269_RC	3	0	2	1	5	1	3	0	1	0
TATGCTCTAGTAGTTC	alt_1269_RC	11	8	4	2	3	2	3	2	2	5
CGCTCAACGGTGTAAA	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
GCTTACGTCCTCGTCT	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
AAGTATTACTCACCCT	alt_1269_RC	26	92	22	35	82	27	85	23	86	15
TTCCTACACCTTATGT	alt_1269_RC	22	82	22	27	74	19	70	27	76	16
GCCGCTTGTTAAATTG	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
GAGTTGCCCTCCGGTC	alt_1269_RC	7	17	9	19	16	9	16	9	10	7
CCCTCACTCTTTTCCC	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
CATCCGGTTTGACCTG	alt_1269_RC	23	48	36	44	37	26	49	39	48	24
AACGACTGACTATGGC	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
TTGCTATCACGTTCAT	alt_1269_RC	0	0	0	0	0	0	0	0	0	0
GCAGTATGGGTTGGTT	alt_1269_RC	33	52	41	32	52	29	56	37	46	36
TCCTCTTCCATTGGAG	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
ATGGGAGTTGTACCTG	ref_4401_missing	15	26	12	13	23	2	20	7	30	13
GTTCGTTTCCGTTATC	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
ACGAAGGGATATACCA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
CGGTTTGTAAGTCATA	ref_4401_missing	24	54	36	26	63	19	63	24	76	26
GCGGATACTCGCCTAA	ref_4401_missing	5	7	8	7	6	7	6	3	0	2
GCACTAATTCATTTGG	ref_4401_missing	33	93	38	31	135	50	115	37	104	34
GTGCCCGCTCCCCGAT	ref_4401_missing	11	14	11	7	20	9	14	8	28	5
GCTACTCATTACGGAG	ref_4401_missing	4	7	9	2	7	1	5	2	7	5
ATAGTCTCATTAAGTT	ref_4401_missing	27	44	22	23	37	20	43	15	49	18
CACAGTGATTCACTTC	ref_4401_missing	2	12	4	8	23	6	21	4	12	6
ACTATCGTCCTTCGAA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
GACAACGTCTTTCGAA	ref_4401_missing	17	30	17	18	35	21	56	16	53	17
ATCCTGGTTGTGACTC	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TATTTTCAAGGGACTC	ref_4401_missing	13	33	23	16	23	18	33	8	40	10
GAGCCGACAAACACCC	ref_4401_missing	5	10	9	6	5	2	10	3	5	3
TTTTCAGCGACTGTGC	ref_4401_missing	2	5	2	1	1	2	9	4	3	3
GTCTTCTAGGTAAAAT	ref_4401_missing	1	7	1	1	5	0	9	2	9	7
TTCGTATTATTTTTTG	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TTGACGGTGCACGACC	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTTTGTTGCACC	ref_4401_missing	16	35	20	16	32	15	40	19	24	9
CCGTGCGCTGGGACAG	ref_4401_missing	2	4	6	2	5	1	12	4	13	1
GTTAATCCTGTTTCAT	alt_4401_missing	19	46	37	25	62	28	65	22	67	29
ATCTATGGGGTCTACA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
GAGCAATTCGTGTCAT	ref_4401_missing	8	10	7	8	21	8	16	7	18	9
TGCTTTTCATCATTTT	ref_4401_missing	7	15	11	4	14	8	17	9	18	5
TTTTTGACCGGCTGAC	alt_4401_missing	29	92	35	43	93	29	100	33	120	41
GCTCAGAGTTTCTGTT	ref_4401_missing	11	38	15	15	45	13	28	14	54	6
GCTGCGCTGAGAGTGT	ref_4401_missing	20	46	22	16	63	25	51	22	55	22
TTTCGCCCGGAGAGCT	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TACCGATTTTAAGACT	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
CCCCTTTGAAGCAACG	ref_4401_missing	4	19	9	6	9	8	8	5	7	4
AACTCACATCCTAATA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
ATCCCTTGGCGTACAG	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
ATCGTGTTCATTGGGC	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
GAGACGGGGTTAGTGG	ref_4401_missing	5	17	14	8	16	8	21	7	15	10
GGATTACTCTGGGCGG	ref_4401_missing	7	23	14	11	21	8	12	10	13	9
GTAAATCTGTGTTGGT	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
GTGGAATCCGTTTGTA	ref_4401_missing	4	5	0	4	8	2	5	1	4	1
TATCAATTTTGCATTC	ref_4401_missing	9	10	7	2	14	9	13	13	15	8
TTCTGCTCTGGTGCGA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
GTTAGACCTTGTCCAT	ref_4401_missing	2	18	6	7	18	1	21	5	15	5
CGCCTCGAACCCAATA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TACCGTTAATCACCGT	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
CGCGGCCGTCATGGTG	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
GCATGCTTTCAGTGCT	ref_4401_missing	1	2	2	0	0	0	5	1	2	1
GTGCATTTGCACCCAA	ref_4401_missing	1	3	1	1	4	2	3	1	7	1
GGAAATTGGTATTTCG	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TGTCTGTCCCAATCTA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
AATCCTCTCACGCTTG	ref_4401_missing	18	36	29	15	35	19	41	16	42	11
CTGGGTGAATCATTCG	ref_4401_missing	2	11	6	5	7	9	17	3	13	8
TCTATCATAGACTGTC	ref_4401_missing	6	24	8	14	25	4	16	5	17	8
CGGTACGGAGCCTCGA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
ACAGGTCTCCAGCGTT	ref_4401_missing	1	3	3	1	4	3	4	0	3	3
CGTTTCAAAGTGCGTA	ref_4401_missing	10	13	5	4	19	8	21	9	22	8
ATCCTCGTGCCCTGTG	ref_4401_missing	4	17	3	7	9	2	8	9	7	2
CTGGTGGATGCTCGTG	ref_4401_missing	5	9	1	4	9	4	13	5	10	6
TATGGTAGTAATACGA	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
GATGGGCGCAACACTG	ref_4401_missing	14	25	14	15	20	8	25	8	21	14
TATAATGTTCGATAAT	ref_4401_missing	9	21	18	6	15	4	14	10	13	7
TATTCGTATTACGTGG	ref_4401_missing	8	4	5	4	6	4	7	5	7	3
AACTTATTTTTTAGGG	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
CGTGTTACCTGCCCTG	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTCCTTCTGCAT	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
TCCTCCTGGCCGTTAA	ref_4401_missing	5	20	12	12	20	10	14	4	12	4
CTTTCCCCCTTCGGTG	ref_4401_missing	4	4	3	0	9	1	2	2	9	1
AATGGCAGAAATTCGT	ref_4401_missing	4	11	6	7	13	9	10	5	5	5
GGGACGGTCTGGTGAC	ref_4401_missing	10	13	8	10	21	9	16	7	20	7
GCAACACCACCATCCC	ref_4401_missing	29	50	41	34	71	30	74	35	59	20
GCTTCTCCTCGGCACT	ref_4401_missing	12	19	12	11	19	10	21	13	22	7
CATTCCCGCCATGACT	ref_4401_missing	0	0	0	0	0	0	0	0	0	0
ATCCCGACATGCTTTC	ref_4401_missing	31	64	30	36	53	24	56	34	56	37
TCTGGGGTGAAGCCCA	ref_4401_missing	12	33	10	9	23	16	34	8	43	14
GCGCGGCCGCATTCTT	ref_862_RC	32	17	37	36	30	30	22	30	26	31
AAGTGAATTAAAACAC	ref_862_RC	51	28	57	42	44	47	34	37	39	39
ATGCCAGCTTAGGGAA	ref_862_RC	0	0	0	0	0	0	0	0	0	0
TGAATGAACTTTGGAT	ref_862_RC	35	36	37	44	27	31	41	30	36	27
ATACGGACGGTGGTGC	ref_862_RC	0	0	0	0	0	0	0	0	0	0
GATGTGCCCTGTCACC	ref_862_RC	4	2	7	4	6	7	2	8	5	2
GACACCTAGTGAGTAC	ref_862_RC	64	132	104	85	144	79	112	58	119	68
CGCAGCGTCCCCCCAG	ref_862_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTGCGTCGCGTA	ref_862_RC	48	39	66	44	37	63	37	46	63	54
CAAGCAAGACATTTAG	ref_862_RC	135	95	148	129	113	131	87	111	98	130
AAGCTTAGCTAAAGCA	ref_862_RC	273	201	340	304	186	251	216	279	225	262
CCGCATGTTTTCATTG	ref_862_RC	82	73	104	95	84	73	78	90	81	84
TCGGTCAGTCTAAGTC	ref_862_RC	0	0	0	0	0	0	0	0	0	0
GAGTTCTACCGAGCCC	ref_862_RC	32	11	32	22	17	23	14	15	21	13
CCAATCTTTGGAGCTT	ref_862_RC	13	14	21	7	7	11	12	14	12	14
TAGCCAAGAATCGATA	ref_862_RC	25	34	33	30	26	22	30	36	27	23
TTCTTATTCCGCCTCT	ref_862_RC	17	9	22	27	15	21	21	20	22	15
CGGCTTGGCCCTCCGG	ref_862_RC	31	25	38	37	29	44	23	38	22	25
TATGCTTGTCAATCCT	ref_862_RC	126	92	124	119	104	133	105	126	114	90
ACGTACCTACTTCTTC	ref_862_RC	87	70	91	75	79	68	62	62	72	67
TGGTGCCAGCTCCGAC	ref_862_RC	109	73	117	120	73	91	85	82	99	81
GGTTGTATACAGGTGT	ref_862_RC	248	206	285	248	213	224	211	221	229	209
TCATCCTGTCCGTCTG	ref_862_RC	10	7	20	13	7	7	11	21	6	11
TCGTTTACCCTACACG	ref_862_RC	74	63	79	87	62	54	53	67	57	73
GAGATAGTGTCTTTAT	ref_862_RC	14	10	19	9	10	13	12	11	5	18
GGGGTTGCTTATGGTA	ref_862_RC	25	26	33	34	25	36	42	29	33	36
CTTTTAGTTTTCTCTG	ref_862_RC	81	66	87	75	58	85	76	73	68	70
GCCGAGTATAGTTCCC	ref_862_RC	0	0	0	0	0	0	0	0	0	0
CTCCCATAAGTCCAAA	ref_862_RC	63	46	59	55	43	42	45	45	55	41
GAACCTTGCCTTTAGC	ref_862_RC	53	34	65	50	47	52	44	72	41	56
CGTGTTGGTGACTCGC	ref_862_RC	0	0	0	0	0	0	0	0	0	0
GCGGCTGTTATTCTAA	ref_862_RC	17	18	24	29	22	20	15	21	17	19
TCTGCTACTCACCTCC	ref_862_RC	17	25	8	16	24	13	26	8	29	8
GTTTTTCTTCAATATT	ref_862_RC	66	56	85	68	43	65	49	67	43	53
TCTCTGATATTTGAGG	ref_862_RC	63	41	62	64	61	63	42	50	46	55
GACTTTGTGTCAGACG	ref_862_RC	0	0	0	0	0	0	0	0	0	0
ACTTAATTATGCGTAG	ref_862_RC	34	34	31	27	16	21	22	32	36	21
TGTTCTATATATTAGC	ref_862_RC	101	66	134	112	94	118	105	106	109	91
ACATTGCCTTTGAGAG	ref_862_RC	116	68	102	102	73	107	86	104	64	80
TCATTGTACACCCTGA	ref_862_RC	35	30	47	33	20	27	27	34	38	23
TGATCAACATTAAGAG	ref_862_RC	32	35	37	22	41	38	50	38	39	35
TCACCAAATAATCTGC	ref_862_RC	6	3	5	13	4	4	11	3	12	7
TGCAATTGTTCCTTCG	ref_862_RC	48	48	48	40	44	35	45	45	29	27
TTATATAACGAAACCG	ref_862_RC	0	0	0	0	0	0	0	0	0	0
TTCCTACGGTCAGTCC	ref_862_RC	12	9	16	20	8	6	10	11	19	5
GGCGCGACTCGTTCGA	ref_862_RC	61	36	75	62	38	55	45	59	51	60
CTCACAACCTGCACCG	ref_862_RC	0	0	0	0	0	0	0	0	0	0
CGCCTTTGGGTCGCCA	ref_862_RC	0	0	0	0	0	0	0	0	0	0
TCATGCGACTTCAGAC	ref_862_RC	79	78	115	96	85	69	60	94	81	79
TATTCTTTGCTTTCTG	ref_862_RC	92	55	108	95	48	102	52	89	36	71
ATGTGCCTGGGACGTA	ref_3238_reverse	11	8	17	17	8	4	10	18	7	11
TTCGAGGATTGCTATG	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
GGCCGAACCCCGCATA	ref_3238_reverse	21	42	37	25	39	27	41	19	57	19
TTTGGCGAAGTAGTTG	ref_3238_reverse	57	91	60	56	116	44	89	40	117	49
TTTTGGAAGGAGTACG	ref_3238_reverse	54	123	70	65	137	43	120	63	132	48
ATAAGCACGGTATAGT	ref_3238_reverse	20	33	25	31	39	30	42	19	43	28
CCTCCCCTGATACGGG	ref_3238_reverse	11	36	16	11	36	2	38	10	31	6
GGACGGTTTCAGTTTG	ref_3238_reverse	13	14	14	17	23	8	23	9	22	15
ACCTTTACTTGTCTTT	ref_3238_reverse	1	1	0	1	1	0	2	4	5	0
TACGGCAAAGGATCAT	ref_3238_reverse	13	13	16	9	16	14	18	10	21	9
CAGGGCGATGCTTCTA	ref_3238_reverse	12	22	17	19	33	15	24	17	35	13
AGTATGTTTAATCCGC	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
CGCAGAATCGAGCCGT	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
GACGGATTATTTTTAG	ref_3238_reverse	0	0	0	0	1	0	0	0	1	2
CTGACTCGGTTTTTGG	ref_3238_reverse	23	64	34	20	53	26	39	23	57	18
TCTGATAGGCTTGTGC	ref_3238_reverse	6	30	13	14	15	14	21	10	26	5
CTAACATCTTCCGCGC	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
TGACTCAGTGAATCAC	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCCCCGCAGCTCA	ref_3238_reverse	15	50	13	20	66	18	66	31	65	27
CTCCATCCAGAGTTTT	ref_3238_reverse	1	11	7	2	9	4	6	5	6	0
TGCGGCCCTAAAAGAC	ref_3238_reverse	31	43	42	26	49	17	53	27	51	25
CCTCGCTAGTTTTACA	ref_3238_reverse	27	39	29	33	39	20	58	36	56	34
CAGGATTTCGTTTTTG	ref_3238_reverse	31	42	36	27	33	12	43	22	39	19
TTATGAGGGTAGTCTC	ref_3238_reverse	14	22	10	10	20	10	19	9	18	13
CCCTACCTGCCCCATG	ref_3238_reverse	3	6	14	4	15	9	12	6	16	4
GCTTCGGTACACCGCG	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
AATATGGTACTATTCC	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
TGGCTTTGGCCGGAAG	ref_3238_reverse	0	0	0	0	0	0	0	0	0	0
TTGCAAGGGAAGTGGA	ref_3238_reverse	8	11	12	0	10	7	20	3	12	7
CAGCATTATGAGCAAA	ref_3238_reverse	42	65	53	36	53	23	79	35	69	41
GAAGTGAATCTGGAAC	ref_3238_reverse	2	9	4	1	7	2	9	4	7	3
TAAGACTAACCCTTTG	ref_3238_reverse	20	40	27	14	28	16	41	8	39	11
GCACAACTCGTCTCTG	ref_3238_reverse	91	181	121	100	186	95	180	98	189	85
TATATTGGAATACTTG	ref_3238_reverse	25	46	28	27	45	19	58	31	57	16
GTTTATATGTTGGTTT	ref_3238_reverse	28	30	27	28	34	31	41	21	46	11
TAGTCTCTGAGAGCAT	ref_5980_new	40	8	42	44	9	24	4	23	10	32
GGCCATCGCCTTATAT	ref_5980_new	50	22	59	55	12	42	8	65	19	48
TTGAACACCAACGCGA	ref_5980_new	67	35	66	66	24	50	32	61	31	55
CCTCATTTTGCCTTAA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GGGTATTACTTCCTCG	ref_5980_new	138	46	219	171	49	149	52	135	53	133
CTATAATTAGTACTAC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTCCGTTGGTCAACTA	ref_5980_new	578	132	652	566	153	543	153	533	157	512
ATTGTAATTCTGAATG	ref_5980_new	208	67	234	201	68	178	69	175	68	166
TCTCCGCTCATTTGGT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TAGATAACCTGAAGCC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GAGGTTTCGCTAGCAG	ref_5980_new	175	55	214	202	57	169	53	172	48	191
CTCGTTCCGAACTGTG	ref_5980_new	38	16	39	57	8	35	15	43	15	39
AGTGTTGATCTGACTT	ref_5980_new	143	50	149	181	53	148	52	137	38	137
TAGAGACCTATTTTTA	ref_5980_new	30	14	47	38	9	24	13	38	10	20
TATCGTCGTATTGGAT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CCATCTTCAGGCTCTC	ref_5980_new	130	48	180	142	62	125	58	129	57	135
CGCACGCACTTTCACG	ref_5980_new	7	2	8	2	0	2	0	3	0	1
ATACCCAGTCGTAGAA	ref_5980_new	31	15	35	21	9	28	17	21	12	27
TTGCAGCTTGAGCCGG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GCGCTCAATCGCACCT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GTATCGTCTGCAGGTC	ref_5980_new	25	7	48	35	11	36	10	36	10	36
GCTAGTACTATTCCGG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
AGCCCCTGTTTCGGAC	ref_5980_new	227	70	285	246	85	200	66	238	77	214
TTTCCACACGCTATAC	ref_5980_new	306	91	382	358	131	260	149	322	120	269
AAAATATGCTCGAGCA	ref_5980_new	69	20	97	56	24	78	17	55	13	51
ACTCATGTTACGTTCA	ref_5980_new	30	5	38	21	9	30	14	26	22	29
CCAAATAATTATGTCG	ref_5980_new	95	23	114	101	28	83	30	93	43	99
TTACCCGCGGTGACTG	ref_5980_new	17	73	24	20	54	17	70	18	81	20
GTGGTCTATATATGGT	ref_5980_new	72	23	92	94	21	74	29	80	20	69
TCTGTTGTCTTAAGAA	ref_5980_new	20	8	23	21	4	18	5	17	2	14
GGCAATCAAGGTATTT	ref_5980_new	50	15	51	62	22	53	17	58	19	36
TTTCTCCTAGGGAAAA	ref_5980_new	66	22	94	74	22	83	22	62	24	72
AGGTGCAGCTCCGTAT	ref_5980_new	21	8	23	22	13	18	11	29	8	25
ACGCAATTGCACGTAT	ref_5980_new	329	106	379	368	113	357	94	302	123	268
CGCCTTATACCTTGGA	ref_5980_new	167	55	238	201	65	171	62	165	57	165
ACTGTTATCCATCATG	ref_5980_new	31	7	33	23	3	35	9	18	7	6
CTGCTTCACGGGTTCT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TACCTCACTTGACATT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTACACCGTTCATGTA	ref_5980_new	42	19	59	47	27	45	12	47	13	35
CGTTTTCGGGGACACG	ref_5980_new	300	108	348	294	66	273	89	245	113	223
TCAATCGTGCAAAGTT	ref_5980_new	111	31	121	130	49	105	38	77	39	90
AAGTTACTCAGCATAC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
AACGCGACCATTCGGT	ref_5980_new	71	21	83	69	16	66	10	70	24	64
CTGTTTAACAAATGGC	ref_5980_new	37	3	45	35	15	33	10	18	11	24
AACTTAGATTTGTCGC	ref_5980_new	43	10	29	45	11	36	9	48	14	34
GGTTTTCACTACTCGG	ref_5980_new	80	22	82	85	10	82	31	79	19	72
TAAACGTCTGGAGTTA	ref_5980_new	71	27	108	98	25	82	21	62	21	81
ATGTCTGGTTAGTGCA	ref_5980_new	176	53	208	211	73	183	75	172	88	184
ACCATATCTACGGTTT	ref_5980_new	6	1	8	4	0	9	1	7	2	5
TTACTTCTTAGCTATT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CCCCCTACCGATGCTT	ref_5980_new	342	99	480	366	100	366	96	361	118	303
TCTATATGCCTGGAGA	ref_5980_new	35	11	52	33	13	46	12	35	11	47
GTAGTCTACCAAGTGG	ref_5980_new	37	6	49	69	14	30	7	49	14	31
CTTCGTGTTACAAGAC	ref_5980_new	52	16	62	62	8	51	18	67	11	45
TAGTGCGCTCTGTTTT	ref_5980_new	7	2	8	5	2	12	1	8	2	9
CAGAGATCCTTTTTTT	ref_5980_new	132	45	169	126	32	133	34	122	26	101
CAGGTCTCAGGGTGAT	ref_5980_new	277	82	361	290	98	256	93	271	97	250
ACTAGATTTAGTCTAA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TGAGCCGGTTACTCAT	ref_5980_new	55	13	53	49	6	50	17	43	17	56
CGGGAGCCCTTGGAGG	ref_5980_new	129	35	152	166	35	154	44	161	42	135
CACGCTGGCTGCCATT	ref_5980_new	184	69	199	189	44	172	50	160	69	139
CGTATATTTTAATGTA	ref_5980_new	78	30	83	106	18	81	24	81	26	95
GTTCCTAATCCGAAAA	ref_5980_new	46	9	51	52	13	36	13	45	9	34
CTACGTGGGAGCACAT	ref_5980_new	16	6	16	5	7	22	5	34	4	20
CTAGTTGTCGGTAGCG	ref_5980_new	121	40	165	153	42	159	58	136	48	130
GGCACGGGACGTTACG	ref_5980_new	39	20	63	51	11	28	13	41	15	29
ACCTGACAGGGGTTCG	ref_5980_new	42	3	69	40	9	28	5	28	16	39
ACACTTCCTGTTTAAA	ref_5980_new	95	25	106	77	20	89	19	73	25	86
CATCGCATGTATATCG	ref_5980_new	195	55	254	228	67	161	67	172	72	164
TGTAATCCTGGGATAG	ref_5980_new	145	57	165	157	31	122	37	124	48	98
AGTGTATCGCTATGAT	ref_5980_new	232	71	308	308	84	217	66	240	68	186
TTCCGCAGATACGTTC	ref_5980_new	4	3	15	7	0	5	2	15	4	6
TACTAATTATTCTTAG	ref_5980_new	48	9	46	42	10	47	8	37	18	39
ATAAGACATGCGCTGT	ref_5980_new	553	159	634	554	161	493	141	465	154	431
TCCCTGGTAGTCCTAG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTCAAGATAACATTTA	ref_5980_new	32	11	30	40	15	29	12	37	13	31
GTATCTTAACTTCGCG	ref_5980_new	28	3	34	40	13	30	9	25	12	28
CCGACCGGTGGCTGTG	ref_5980_new	31	22	30	44	13	38	22	33	22	26
CTCTGCGTTGTTATTG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GCTCAGGCATCCGGGC	ref_5980_new	71	14	83	79	26	72	16	77	23	81
TATTCTAGTGGTTTAA	ref_5980_new	10	6	11	3	3	10	6	5	3	3
CGCCAGCGATTCCACA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CCTGACCGGCGTACAT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GTGGGTATGTGTGGGC	ref_5980_new	125	32	166	141	22	119	47	122	26	85
TCCTGTTATAGAGTGG	ref_5980_new	60	10	80	70	18	55	13	44	12	60
GGTCGATCACTTTGAG	ref_5980_new	347	131	439	398	129	378	122	333	134	347
TGCGAACGGCGTCTTC	ref_5980_new	154	36	165	146	28	142	27	129	41	122
GCGTCAACCGCCTAGC	ref_5980_new	54	27	101	84	34	67	22	73	26	71
GACAGACCTATATCCA	ref_5980_new	137	45	130	139	55	114	45	128	50	102
GTTCTTATTTCGTTGT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
ACGTCGGTCACAGTTT	ref_5980_new	197	64	272	227	72	212	86	217	68	203
GTGGCTGCTTCGGGGT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTGGATCACCCGGTCA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GTTGCCCGAGGCATGC	ref_5980_new	239	57	293	198	56	214	57	205	71	189
TGCCTAAGAATTTAGT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TCTCTCGGGCAGACCA	ref_5980_new	62	15	82	49	10	58	16	73	25	51
ATGGTACCGTTGCCCT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTGAGTATCCCTTGAG	ref_5980_new	47	14	60	36	17	53	8	26	19	38
GTCCAGTCTATCGTTC	ref_5980_new	166	50	203	172	48	146	47	159	35	162
ACTCCTCTGGGATGTG	ref_5980_new	68	19	83	58	24	71	15	60	24	64
TTGTATGCCTCTGCGC	ref_5980_new	182	46	240	172	47	174	69	115	64	138
CCATCTTTTAATGAAG	ref_5980_new	18	8	31	16	3	18	11	25	11	23
AATCACGAGCTAGGAT	ref_5980_new	11	6	15	14	7	11	7	13	5	7
CCTTCGGTCTCTTCCG	ref_5980_new	108	31	137	117	30	106	43	113	40	111
CACAGATGTTGTTCCC	ref_5980_new	4	1	7	5	5	5	2	2	6	7
ATTTGCCCCCGGTAAA	ref_5980_new	84	23	78	82	22	76	13	76	26	77
GGTACCTGATTTCGTA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTCGGACATCCTTTAT	ref_5980_new	36	9	30	41	11	37	8	27	15	25
TCACTTCCAGGATTTT	ref_5980_new	35	10	61	61	14	46	26	44	17	57
TCATAAAGTGATTTGT	ref_5980_new	78	29	127	108	21	104	28	87	28	91
ACAAATTCTATACGGT	ref_5980_new	65	31	68	66	22	64	17	54	12	64
TGTATAGTGTATCTGG	ref_5980_new	26	14	45	37	11	35	14	34	9	34
AGGAACGCTAGGAGAG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CCCCGCGGAAGAAAGT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CTTTTTTATAGCAGAG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GATGGAGCAGTTACTC	ref_5980_new	36	11	48	36	10	18	8	21	20	47
CTCATTCAGCTGATCT	ref_5980_new	43	12	37	45	12	39	13	41	6	33
TAATAGTCTAGATGTG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
AAGCTACACTTTAGTT	ref_5980_new	21	3	29	13	8	18	4	11	6	15
TTCCCTGTGTTTAGAA	ref_5980_new	145	39	188	161	50	137	36	169	53	138
CGCTTAAAGCTTGGAC	ref_5980_new	36	12	42	29	4	40	13	40	17	41
AGTCCCTACTTTTCGA	ref_5980_new	215	57	262	209	52	161	57	225	63	158
GCCACCTTCCCATGTA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
AGCGGTGCCTAGCAAG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GAGGACGTCAGCTTGC	ref_5980_new	74	14	81	64	15	60	18	74	24	71
ATATGGGATGTGTGAA	ref_5980_new	3	1	8	4	1	3	0	1	5	3
CTTTGTCGACAGTTTG	ref_5980_new	36	6	29	28	8	23	7	17	16	17
TTTTAGTTGTAGATTT	ref_5980_new	174	40	198	183	42	186	61	163	54	141
AGCTGAAGTACTAGTG	ref_5980_new	10	10	14	5	0	16	5	9	3	9
CTTGGGCTTCCCTTTA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TGGCGGCGATGTGAGA	ref_5980_new	89	22	138	137	31	99	32	98	35	100
TAGTTATAGGTTTTTT	ref_5980_new	221	78	266	226	92	206	83	207	89	184
ACGCCCTGCCCGTTCA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GTCCGTCACAAGAGTT	ref_5980_new	58	27	75	85	14	69	19	53	21	56
TATCGTAATAGGCCTT	ref_5980_new	42	18	67	63	18	81	11	87	22	51
TTATTGGGTGCGGCTG	ref_5980_new	62	19	74	74	19	68	34	56	26	52
TTCGGGCATCTAAAGG	ref_5980_new	62	16	79	73	16	56	14	64	23	57
TTAACCATACGCGCAC	ref_5980_new	41	15	31	33	10	35	17	31	11	16
GACGGCTACATTACCC	ref_5980_new	18	5	43	25	8	28	13	34	11	28
AGATCGACGTACGGCC	ref_5980_new	48	21	43	39	20	33	23	54	26	38
TAAACAGAACTTCTAG	ref_5980_new	829	277	967	872	330	756	298	859	344	748
GTAGAGCTCATCTTGA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GAGTAAATGGCGTATC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CTTTCCTGTCTTTGGC	ref_5980_new	97	28	106	85	30	83	34	94	27	76
CGTGCCACTCAATGTC	ref_5980_new	56	11	53	43	13	44	20	56	14	37
GGCCGGGAACATCAAG	ref_5980_new	126	32	152	155	39	128	34	115	46	112
CAATAGACATGGGTTC	ref_5980_new	14	3	13	11	3	5	2	11	3	11
AAGCTATTCAAGGGTG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TCGGCGACATCCCTGT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TGGTAGTTCAATCGAT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CAATTGCTATAGTCAT	ref_5980_new	119	23	113	105	27	104	32	91	44	82
CCGTTATGTTTCTGCT	ref_5980_new	120	26	133	134	38	114	45	111	33	106
AGATATGTACTCTTTA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TAAGCGTAGTCCGACT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GAGTACAGTAGGAAGG	ref_5980_new	184	63	199	214	47	184	47	147	42	147
CACCTTACGTAGAATC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CTTGGATACTTCCCGC	ref_5980_new	17	8	12	23	8	12	6	13	6	14
TAAAAGTTTATTGCCA	ref_5980_new	68	15	77	81	20	59	16	50	22	59
TACTAGGGAGGATTTT	ref_5980_new	32	15	36	36	7	30	7	34	8	30
GTGTATCCTTCTTTCG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
ATGTCATTGGCAGGTA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GAAAGGCCGGGTTTTG	ref_5980_new	1	7	4	2	2	0	2	1	6	2
AGTTTCGCAACTCTAT	ref_5980_new	144	39	163	154	33	117	48	114	48	104
TTCCAGGGAGTGTTTG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTTTTCGGCTTCGCGT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
AGCGCCTTTTGTTATT	ref_5980_new	121	28	157	141	23	115	28	109	33	117
TGGGGTCGCCGGGCTT	ref_5980_new	713	147	836	778	164	652	164	685	178	581
TTCGTTGATGGAACAT	ref_5980_new	102	16	139	108	32	76	25	98	29	95
AGCACGTTCGGCACGA	ref_5980_new	83	54	123	112	38	79	46	106	46	87
TCGAATTTTAATTTAT	ref_5980_new	270	61	384	329	72	287	83	275	92	278
TCGGCTAATGTGGCCC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GACATTCGTTTGTCGT	ref_5980_new	30	9	49	53	11	33	16	41	9	36
CATTACGTCGTCGATA	ref_5980_new	14	1	11	11	3	5	0	7	2	14
ATAATGTGACTCTTAT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CGGGCAGAAATTTTGA	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GTATCTTTAGGTGTTG	ref_5980_new	19	6	30	21	6	18	9	16	5	14
TCTAGTATACACGTTC	ref_5980_new	23	13	41	42	15	20	17	25	19	35
GGTTGAAACTTATAGC	ref_5980_new	227	71	251	224	76	259	70	218	64	195
TGTTCATTAATCTCCT	ref_5980_new	57	20	98	60	22	55	14	60	13	53
ACCTAAAAGACTCCTT	ref_5980_new	81	31	124	99	19	73	31	92	36	76
TTGTGGCCGCCAGCAA	ref_5980_new	116	32	211	168	38	124	36	103	58	97
CATTCTTTGGATATCC	ref_5980_new	323	97	367	310	82	263	98	286	84	248
TTTTTCCTGTATGGCA	ref_5980_new	52	16	56	56	11	46	15	60	23	45
GCGAAGTCCCGGGTAT	ref_5980_new	56	11	71	66	22	55	16	41	15	35
CTCTGTAGCCTCGACC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
ATCATCTTTGTTAGCG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TCGAGGTTTCTGATAC	ref_5980_new	45	11	56	70	12	55	17	56	10	57
ACTGTACCCGGTGCTG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GCCTGTGCGTAGCGAA	ref_5980_new	39	11	55	44	19	28	11	38	17	31
CACGCAGTATAGCTGT	ref_5980_new	119	41	190	148	46	144	44	121	44	109
TGCGTCGATATGGTCT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
GCCACGGTCATGTTCA	ref_5980_new	84	28	118	97	18	80	28	82	22	92
CCGGGCGCTTCTGTTC	ref_5980_new	14	9	29	35	1	17	9	10	7	12
GATAGGGCCTGTTAAT	ref_5980_new	0	0	0	0	0	0	0	0	0	0
TTTATCGCTTTCCCGC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
ATTATTTTGCTTTTGC	ref_5980_new	0	0	0	0	0	0	0	0	0	0
AGAATCTTCAGAGCCG	ref_5980_new	0	0	0	0	0	0	0	0	0	0
CAGACAACTTACAGCT	ref_5675_new	43	36	66	62	45	41	43	55	57	56
ACACGTTCAGAATACC	ref_5675_new	0	0	0	0	0	0	0	0	0	0
AAATCGGAGGCCATCC	ref_5675_new	55	34	67	71	37	56	37	57	40	57
TTAATCGTCATGCGTG	ref_5675_new	59	46	69	59	45	65	59	53	35	48
GGCGGGCCCGCCCAGG	ref_5675_new	0	0	0	0	0	0	0	0	0	0
ATCTAAGCCTTGCTAG	ref_5675_new	396	250	479	424	312	345	240	346	276	361
TGTCAAGAATGTTTAT	ref_5675_new	28	21	34	30	8	22	15	26	26	32
GAACCAACATCTATAT	ref_5675_new	13	8	14	11	13	10	12	14	10	7
ATTTCTTCACTTATTA	ref_5675_new	16	9	11	10	8	7	12	5	8	9
ACTGGGTAGTAGGTAG	ref_5675_new	0	0	0	0	0	0	0	0	0	0
ATACGCACTACAGTGG	ref_5675_new	236	170	250	225	177	211	178	217	154	212
TTTGCACATATTGCGC	ref_5675_new	44	23	51	47	24	28	26	30	19	36
CGTGCCATTGCTGTCG	ref_5675_new	5	8	7	10	10	7	13	8	4	5
AGTTCCTGGGGTTAGG	ref_5675_new	247	162	295	233	147	233	128	250	133	203
TGTGATTGGCCAGTTT	ref_5675_new	12	9	21	19	17	11	16	8	12	18
GTGTAACAGGATGTTG	ref_5675_new	140	102	212	194	95	138	103	175	92	119
GGTCGGGCCTGGGGCG	ref_5675_new	0	0	0	0	0	0	0	0	0	0
CCCCTAAGCGTGGTCA	ref_5675_new	150	110	180	159	103	120	83	126	127	139
TGCCTTGTTTAGCGGA	ref_5675_new	42	33	55	60	37	36	26	50	31	32
ATAAGGGATCAGTTTG	ref_5675_new	69	38	74	81	50	68	52	63	43	43
TAGTGTGAAGCCAGGT	ref_5675_new	0	0	0	0	0	0	0	0	0	0
AGCTTCTTATCACACT	ref_5675_new	9	9	10	14	10	18	12	11	9	10
GTCTCATCTAGGGGTG	ref_5675_new	6	1	10	4	3	6	4	7	5	6
GTGTAGCTCTTGGTTA	ref_5675_new	0	0	0	0	0	0	0	0	0	0
ATGTTAAATTGTGCCT	ref_5675_new	56	23	68	75	29	59	40	67	49	40
TAATCTGTGTGGGTTT	ref_5675_new	79	54	113	86	59	82	61	72	43	70
TCTACCCATACTGCTA	ref_5675_new	3	8	0	0	2	3	1	3	2	1
CAGCTATTCTTCTATG	ref_5675_new	32	20	54	62	34	37	34	54	30	32
ACACAGGATCTAAGCT	ref_5675_new	28	16	38	37	18	27	31	20	19	18
ACAAGCTAGTCCCGGT	ref_5675_new	513	342	548	488	310	437	345	457	338	459
AACCGGCCCTTGTACA	ref_5675_new	3	10	5	3	16	3	9	5	10	5
TATTTATGTATCCGTA	ref_5675_new	1	3	5	7	0	3	4	6	2	4
TGATTTGGGAGTTGCC	ref_5675_new	27	13	21	27	20	19	17	14	17	24
CTACTATTCGTACGTA	ref_5675_new	7	3	13	13	4	7	8	12	9	7
ACTGGGCCTCTGTAGT	ref_5675_new	26	18	34	21	19	19	17	29	24	29
TTCGGCATCAATACGA	ref_5675_new	40	44	34	46	38	37	30	32	35	34
GCGGGATACGAGCGGT	ref_5675_new	0	0	0	0	0	0	0	0	0	0
AAAGCGGCTACTTAGC	ref_5675_new	0	0	0	0	0	0	0	0	0	0
TAAGATAGAGGCTTGT	ref_5675_new	0	0	0	0	0	0	0	0	0	0
ATGTGGCTGTGGTTGG	ref_5675_new	195	118	253	207	133	200	138	210	156	182
TATGCTCTGCTGGGTT	ref_5675_new	4	4	3	1	2	6	2	4	1	8
TAAAGCTCACAGTCCC	ref_5675_new	30	18	41	33	27	27	21	16	18	25
CCTGTACCTGCACTTC	ref_5675_new	22	45	27	27	39	23	46	28	49	21
GATTCTTGTGCATTTG	ref_5675_new	20	5	11	14	11	16	17	9	12	7
TAACATTAGCTCATTA	ref_5675_new	7	1	10	10	12	6	5	10	6	8
GTCTTAAGCGGAACGG	alt_2078_RC	426	142	532	490	144	384	154	371	145	378
TAACACGATCGCACTG	alt_2078_RC	239	73	277	247	70	213	96	210	77	182
ACTAGGTCGATTGCCA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GGAAATAGGCCAAGAG	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TTGTTGACGACTTTTA	alt_2078_RC	297	100	369	291	92	261	108	267	115	279
GTCAGGTTTTCATGCG	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
AATGGCCGTGTTTTTT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GGTGACTTACTGTCCC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GATTAGCTGGAACGTT	alt_2078_RC	12	6	17	25	6	14	9	17	7	9
GGTTGTAAGTGGTGTT	alt_2078_RC	24	5	20	19	4	16	8	18	10	11
GTGAACACACCACAAT	alt_2078_RC	64	11	62	50	23	52	18	61	16	51
ATAGAATGCCTACGTT	alt_2078_RC	137	45	139	99	38	108	34	120	64	112
CAGGTAGTGGGTTTGG	alt_2078_RC	137	50	193	193	67	157	46	175	81	130
TCACTACCTCCGAGTT	alt_2078_RC	60	29	100	111	42	106	73	86	51	70
GACGAATGCGAATCGT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
CACTTAACTATGGTTC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TTGAGTGCCGCTTTAT	alt_2078_RC	134	60	167	152	66	136	64	169	71	129
TATTCACGCGCTTTTT	alt_2078_RC	125	28	135	92	47	98	31	86	44	84
AGCTATCGCATTTACT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TCTACAATGTCCAATT	alt_2078_RC	94	27	95	81	39	94	33	95	30	98
GCCGTCATAGCTCGTC	alt_2078_RC	56	31	84	63	25	59	22	60	24	53
TTTGAGTTTGCCGTGG	alt_2078_RC	94	38	73	88	28	74	31	85	26	61
CACTGCACCTAGACCA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GGCTGCGGGTGCCAAG	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GCTCTATCGTTCCTCG	alt_2078_RC	69	27	70	66	20	50	21	71	18	67
TCGTATTCCTGTAGCC	alt_2078_RC	63	30	86	59	21	52	26	36	30	53
GAGACATACTACTTTC	alt_2078_RC	146	56	183	149	60	148	45	136	59	118
AAATATCGCCTCCTTG	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
ATCGTAGCTGTAACGG	alt_2078_RC	54	21	79	92	18	68	17	71	18	54
TCGCGAGATCTAGTTA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
ATTTTCGTGTGTAATT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TTTCTCCTACCTTCAA	alt_2078_RC	105	70	158	164	104	126	75	136	91	107
AGGCCGTAGCTTGATG	alt_2078_RC	54	24	73	58	22	55	21	51	8	44
CAATGACATTGGCTTG	alt_2078_RC	154	66	200	154	63	145	73	156	68	143
CGGTGTGAGCTTAAAC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TGCTAAGCTTGCTCGT	alt_2078_RC	40	17	58	60	25	36	18	41	25	33
ACTTGTCGGCCTTGGC	alt_2078_RC	79	16	87	84	22	63	14	56	21	59
ACGTTGGCTCCAAACC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GCTATACACGATGACC	alt_2078_RC	16	9	25	14	6	39	10	18	14	15
GCAACCAGAATTGAAC	alt_2078_RC	26	62	31	47	50	35	65	31	64	26
ATTCCTTTTTCATTTC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TGGTCCGGCCGTCTGT	alt_2078_RC	103	38	138	107	46	98	57	95	50	86
TGTTTCTTTTCGGTCA	alt_2078_RC	115	40	111	98	32	88	46	88	46	66
CTATTATAGCCTGGGA	alt_2078_RC	13	10	37	32	7	22	15	28	5	16
AATCATCGATGACCCA	alt_2078_RC	25	7	28	25	8	31	9	20	10	15
CTCGCACAGGGCCATT	alt_2078_RC	119	44	177	117	44	97	44	122	53	117
TTCTACGTCGATAGTT	alt_2078_RC	226	86	309	275	89	234	97	249	84	230
AGTCATTTTATGCAAT	alt_2078_RC	25	11	24	25	11	12	6	10	9	20
TGTTCATAACCTGGTA	alt_2078_RC	124	45	178	143	46	131	43	98	51	106
TTATCTGTTAGTGGAA	alt_2078_RC	387	136	488	389	122	362	134	411	146	381
CAAGACAGTCTCTCTG	alt_2078_RC	128	55	158	126	53	112	57	126	64	109
TGATAAACCACACATG	alt_2078_RC	42	16	50	46	24	43	17	46	19	42
TTAGATTGAAGGTGGA	alt_2078_RC	72	38	109	126	28	79	29	72	28	70
AGAATACGCACGTCGA	alt_2078_RC	193	87	285	249	67	190	63	191	79	193
TGGAATATTTTGCCTG	alt_2078_RC	107	35	148	118	29	77	41	92	33	73
GCTAATGGCACTGTAT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
ACTACTCCAGCGGTTC	alt_2078_RC	64	31	51	68	24	46	22	74	27	57
GATGCATCGGCTGTAA	alt_2078_RC	138	40	123	112	46	105	48	118	48	107
CGTCTGGTGCGATTCC	alt_2078_RC	109	48	120	109	52	100	33	103	50	99
CCTGAGCGAGTCTTCC	alt_2078_RC	683	267	858	802	239	704	231	692	240	620
CAGCCGAAATGAATTG	alt_2078_RC	335	205	442	405	202	385	202	353	214	324
TCTTTAATTGGTTACG	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
AGCGCAATCGTCCTCC	alt_2078_RC	49	16	43	45	14	47	12	46	15	45
ATTCATGCCACTGTAA	alt_2078_RC	54	16	56	45	17	35	21	52	17	43
CACGACGTGAAGCGCA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TGTCTTAGTTCATTAA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GCTTTTTATTTTCCGT	alt_2078_RC	14	5	25	22	6	13	5	14	7	7
TATGTCTTCCTGAGTG	alt_2078_RC	40	10	34	42	15	39	14	29	13	28
TACTATCCAGTCCTGT	alt_2078_RC	122	43	154	138	31	122	55	107	41	138
CCGGTACGTACGGTCC	alt_2078_RC	330	135	431	326	133	314	132	324	138	259
TCTGCTTTATCATTGT	alt_2078_RC	413	147	531	436	148	413	169	365	160	352
TCATTGGTCAACCTTC	alt_2078_RC	65	64	70	89	34	64	47	59	65	55
TGAGAAATTACTCGTA	alt_2078_RC	60	18	68	86	27	59	23	65	21	44
CGCCTGCAATTCGACA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GTGTAGAGTTTCTTGA	alt_2078_RC	135	52	158	157	38	141	58	140	58	114
CACACCCGGTGGATTA	alt_2078_RC	207	90	229	229	87	184	83	181	86	152
CTCATTACGTCTTACG	alt_2078_RC	66	32	84	81	21	37	30	72	25	62
CGCTTCCCCGTAAATC	alt_2078_RC	27	42	33	30	23	27	44	34	22	24
AACTTGTTTCTTCTGC	alt_2078_RC	45	22	75	51	25	43	21	63	24	49
GCGCACCGTATTGTTG	alt_2078_RC	95	27	108	109	37	80	34	91	29	86
ACGAGGTGACTGAGTT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GCGAGTGTGCCCAGCC	alt_2078_RC	106	27	122	110	27	111	38	76	31	93
TATTCAGTCGGTCCTC	alt_2078_RC	12	9	15	19	3	13	2	10	0	5
TGATATCTAAGATTTG	alt_2078_RC	107	27	128	95	39	95	36	124	29	97
TCCCGCACTTAGTTTG	alt_2078_RC	10	2	7	4	2	5	3	3	1	5
AACACTGCGTCCTTGG	alt_2078_RC	148	43	200	205	61	155	69	155	48	123
ATTTGAACGTCTGTAC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
CACATACGTCTACCAT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GTTGGGGTTCAGTCTC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
AAATCCTACGTCGGCC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
GTCGCCCATTTCTGTG	alt_2078_RC	100	25	131	131	25	92	30	99	31	121
TGTGCTTTGTTCTTAA	alt_2078_RC	228	83	212	237	93	181	90	192	77	154
TATAACGTAATTTGAC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
CCCGAGGTAATTGGAA	alt_2078_RC	5	1	11	5	2	5	3	7	4	9
TGTTATACTGCATGTT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TACGTGATTTCTTAGT	alt_2078_RC	76	23	89	67	16	50	35	68	35	76
GTTGAGACCCATTATG	alt_2078_RC	14	3	20	13	9	12	7	12	5	11
AAGGGATTCGTTTGTC	alt_2078_RC	346	112	403	357	123	346	118	291	145	252
GCCGCTTGAAAGTTCT	alt_2078_RC	79	52	164	130	42	113	46	105	60	93
GCTTAAGTTTCCTCTA	alt_2078_RC	111	42	146	134	54	132	39	149	81	123
AATTTTGCGGTATAGG	alt_2078_RC	89	28	104	108	24	83	28	84	47	86
GTGGCATTATATATTT	alt_2078_RC	9	3	16	26	2	8	4	13	0	9
GCTCCTTAAGTGCGAC	alt_2078_RC	151	45	199	151	57	143	59	138	63	127
TAGTGCCCAGTTAGGC	alt_2078_RC	198	64	232	210	87	177	61	203	63	164
ATGGAGTTGCGAAACT	alt_2078_RC	140	56	183	154	45	154	48	142	60	113
GATAAATTTCGTCGCG	alt_2078_RC	173	51	230	176	63	160	59	179	53	168
TCATTTATCTGAGGAC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
ACGGCAACAGACGAGG	alt_2078_RC	6	6	9	8	3	4	2	7	3	5
CTGGTTTGTTTATGTA	alt_2078_RC	16	12	52	43	6	30	11	43	20	32
AAATTTTGATAATTAG	alt_2078_RC	33	9	34	39	9	25	10	33	7	36
CTTTCCGTCGTCAGGA	alt_2078_RC	39	8	41	43	15	37	11	42	21	24
TTACTTCTCCCAAAGA	alt_2078_RC	138	64	135	155	57	114	65	127	69	98
TGGCGCTCCATCTTGA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TGCTGCATTTCGACCC	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TTATCCTTGCACTACT	alt_2078_RC	42	12	36	43	20	32	15	34	13	30
GGTGATAAAATCATCA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
TTTTTCGTGTGTAATT	alt_2078_RC	323	119	413	352	127	305	127	319	126	266
AGCTGACTAAACGGCG	alt_2078_RC	118	25	121	133	38	79	29	88	24	102
ACCGCATCTACTAAAT	alt_2078_RC	113	54	185	139	60	104	73	135	65	93
ATGATACCGTTATTCG	alt_2078_RC	384	130	538	452	151	447	150	390	123	375
GCCCTTCTCTTTATTT	alt_2078_RC	2	19	8	2	16	5	10	6	24	7
CTACTCCGTTATTCGT	alt_2078_RC	39	48	76	83	37	56	34	73	57	47
GTGGCGACTAAGCCAA	alt_2078_RC	115	43	153	107	44	96	37	97	64	84
CGGAAGATCATGTCTC	alt_2078_RC	63	22	90	67	21	83	40	85	18	89
GTCGTTCGATACTAGG	alt_2078_RC	119	28	127	121	30	107	30	95	40	94
CCTGCCAACGTCTACG	alt_2078_RC	65	35	98	77	35	70	44	73	38	67
ATGACTGGAGGGCGGC	alt_2078_RC	21	11	17	6	5	13	4	16	3	15
TAAAACTCCATTAAGC	alt_2078_RC	290	86	334	277	78	251	107	275	92	253
GTTCCAACGTTAATCA	alt_2078_RC	21	10	26	27	8	24	11	21	5	14
TTTGTCTGACTGAGCT	alt_2078_RC	201	72	241	195	60	193	74	194	81	185
GGCCGTACCAAGAGAC	alt_2078_RC	94	38	108	107	39	93	43	79	45	71
TTCCATTCGTCGCTCC	alt_2078_RC	117	47	152	152	47	128	39	138	62	106
TCTACGGGGTCCCGCA	alt_2078_RC	49	13	48	40	16	25	9	42	24	33
GAGAATGTGGAGTACA	alt_2078_RC	71	29	78	87	31	82	21	69	37	64
TTTTTACATCACTGGT	alt_2078_RC	155	67	182	144	59	150	81	148	69	132
CGCTCCTTCGCTCCGA	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
ACGACGTCCCTATTTT	alt_2078_RC	0	0	0	0	0	0	0	0	0	0
CCTTGCTCTCTACTTC	alt_2078_RC	3	9	4	5	9	8	8	8	5	2
TGTCTTATCAGGCGAT	alt_598_missing	36	55	70	28	64	48	72	39	47	29
GCGAGCCGCTGAACTT	alt_598_missing	0	0	0	0	0	0	0	0	0	0
AGTTTTAGGTACTGTC	alt_598_missing	23	38	16	18	33	22	23	14	18	23
TGGTTAGCTCTTCATT	alt_598_missing	59	81	74	60	95	41	82	68	85	54
CGTTACATCCCGGACC	alt_598_missing	0	0	0	0	0	0	0	0	0	0
TTGGATACTGTTACAT	alt_598_missing	18	25	32	21	30	26	36	12	34	18
TACATCGATGTTACGC	alt_598_missing	29	64	45	32	62	42	75	42	51	36
CACTGGGCTGGAGTTC	alt_598_missing	30	49	44	31	55	40	45	33	44	38
GTACCATAATACCAAT	alt_598_missing	17	31	17	24	30	19	24	20	29	12
GGCTCCAGCACCCGAC	alt_598_missing	58	122	81	65	92	47	101	52	113	43
AAGCCTTTGGACAGTT	alt_598_missing	12	15	8	7	19	8	18	7	12	6
ATCCCCCCGCGCAGCT	ref_5956_new	37	57	41	33	67	39	91	27	83	19
ACTGGCGAAAGCTTTT	ref_5956_new	46	55	54	42	54	34	46	24	66	50
TCGCCAGCCTTGCCTG	ref_5956_new	72	65	82	46	74	63	100	54	78	42
GAGCGGTTTACCCCAA	ref_5956_new	28	45	40	29	47	39	54	27	40	32
TGGAAAGGGTGTACTA	ref_5956_new	0	0	0	0	0	0	0	0	0	0
TTTCAGTTCCTAAGCT	ref_5956_new	6	11	3	6	5	2	6	6	9	2
TGGGTCCGCTCGGAGA	ref_5956_new	27	37	41	22	43	30	50	37	42	23
TATCTGCTCGAAGTCT	ref_5956_new	2	13	0	7	12	4	7	6	7	3
GGCCATGTAAATTTCG	ref_5956_new	40	55	46	38	69	41	70	33	72	35
GAGGCATACTTGCGAT	ref_5956_new	0	0	0	0	0	0	0	0	0	0
GAGCGCGTCCACTGGC	ref_5956_new	44	58	36	24	33	22	49	22	56	27
GGGAGAGTTATTACTC	ref_5956_new	2	1	1	0	1	1	3	2	0	1
AGCGCTCTTGCGTAAG	ref_5956_new	41	62	26	38	65	39	56	26	76	33
ATGAAGCATGCGGACA	ref_5956_new	57	63	51	54	50	34	65	51	66	39
GAGACTTTCTACCTTG	ref_5956_new	2	0	4	0	0	0	2	1	1	0
GTTCATTATTTTGAGC	ref_5956_new	196	326	255	226	326	203	355	198	337	199
GTATCAATCGGGCTAT	ref_5956_new	20	23	21	18	28	12	35	15	40	16
AAGCCCTAACTTATGA	ref_5956_new	76	143	89	63	123	77	124	61	131	55
ATAATCCACGGCAGAG	ref_5956_new	0	0	0	0	0	0	0	0	0	0
TTCTGACGCCCCCGCT	ref_5956_new	61	105	72	58	98	63	102	33	115	48
ACTCTGTACCTTCCTT	ref_5956_new	0	0	0	0	0	0	0	0	0	0
CCTGTCGGCACTTAAA	ref_5956_new	2	20	3	3	9	2	16	5	10	5
ATGATGCCGGTTATGT	ref_5956_new	0	0	0	0	0	0	0	0	0	0
TGTGTTTTTAAATAGT	ref_5956_new	46	87	68	50	89	49	97	53	110	46
TGGTAGCGAACATAAT	ref_5956_new	54	68	60	58	68	54	98	50	88	49
TTTGTTGTTCTGGGAT	ref_5956_new	126	194	163	127	210	117	236	110	234	98
AACTATATTGTACTAC	ref_5956_new	33	71	41	49	68	43	69	31	56	39
TCTTTAATGACATACG	ref_5956_new	7	17	7	2	7	4	10	4	8	1
AGTGTTAGATCCGTAC	ref_5956_new	101	136	101	84	122	91	146	92	143	86
ACGTTTGTGAGTCTAT	ref_5956_new	21	42	30	18	43	17	39	26	59	22
TTACGCACTTGTCTTA	ref_5956_new	2	9	2	4	16	4	12	1	8	0
TCTTGAGCCTTCATGC	ref_5956_new	75	106	80	61	110	76	102	57	108	65
CTCTGCATTACCTTCG	ref_5956_new	1	3	4	1	2	3	5	0	7	1
CCCTTAGCCTGGATAG	ref_5956_new	9	13	5	8	18	12	14	10	16	6
CAGTGTGCTAGGAGGT	ref_5956_new	8	8	6	8	12	7	16	10	16	9
CGTTTAAAGGGTGCGT	ref_5956_new	0	0	0	0	0	0	0	0	0	0
TGATACCTTTGCGGGG	ref_5956_new	90	134	96	68	135	92	103	71	143	97
GCAGTGAGCTTAGACG	ref_5956_new	20	24	21	18	36	19	33	28	35	18
GCAGTTACCGGACGTC	ref_5956_new	30	57	40	34	59	45	53	26	52	33
AAGGTGATCGAGATGC	ref_5956_new	38	50	59	48	60	53	69	44	60	25
CCGTACCACGTTTGTC	ref_5956_new	38	84	43	34	80	32	103	33	87	23
ACTCTGCGATTTTATT	ref_5956_new	30	44	34	26	41	30	37	29	39	27
GTACTTGTTGTCGTTG	ref_5956_new	0	0	0	0	0	0	0	0	0	0
ACCGATCTCTCTTTCG	ref_5956_new	7	56	9	2	30	9	35	14	40	7
GAGGCATACTTGCGCA	ref_5956_new	17	26	19	18	30	13	23	21	34	10
CCTATTATCTTTCTAC	ref_5956_new	11	35	28	23	49	10	57	13	56	13
GCTCCATTTTAAGAAA	ref_5956_new	14	32	14	14	42	18	34	18	29	14
TGTCCGGTACGACCTA	ref_5956_new	17	74	19	23	84	11	74	20	89	28
ACAGCCATTTTACTCT	ref_5956_new	3	1	4	5	7	6	3	3	6	2
CGGCACTTCCCCGACT	ref_5956_new	18	108	22	28	127	20	131	25	139	16
GTTAGTTGGCCTTCTA	ref_5956_new	73	100	84	71	113	67	134	60	101	59
AAAAGCGACTTTCTTG	ref_5956_new	2	10	5	4	7	8	10	6	8	6
GCTTTGAGTCGCTGAT	ref_5956_new	47	65	49	32	62	37	65	33	69	37
TAGGTCGGTATGCTGT	ref_5956_new	0	0	0	0	0	0	0	0	0	0
GCACGTCAGTGGGGGT	ref_5956_new	14	16	12	10	24	18	22	15	26	24
GCATCCGTCTGTGCCA	ref_5956_new	15	42	26	17	40	22	29	14	44	26
AGACGTCGGCCAAGCA	ref_5956_new	68	98	75	50	106	62	86	69	112	78
GGATTGGGCACTCGTT	ref_5956_new	22	62	30	36	51	30	74	36	58	24
TAGGAGATGTAGTCTT	ref_5956_new	3	1	2	3	7	3	2	2	9	1
GATTTGAAATACGCGC	ref_5956_new	9	11	7	11	7	9	21	8	12	14
GGAAATACTTACCTAG	ref_5956_new	3	21	6	2	17	1	16	4	18	7
ATTGATTATAAGTTCG	ref_5956_new	76	77	87	81	99	76	113	50	105	65
CTATGTTAGTCGCGTA	ref_5956_new	0	0	0	0	0	0	0	0	0	0
TTGTGGCCGATTAGGT	ref_5956_new	41	59	42	56	45	37	54	29	56	25
AACATAATAATTACTG	ref_5956_new	0	0	0	0	0	0	0	0	0	0
AGAATCCGTTTCTAAC	alt_5636_new	77	75	88	60	93	72	97	50	103	65
ACTCACTATCGCTAGG	alt_5636_new	86	92	91	73	74	77	91	46	91	47
ATTCCGATCAGGTTTG	alt_5636_new	58	75	65	63	86	39	80	51	84	51
GCACTTCCTAGAGAGG	alt_5636_new	12	15	14	9	14	10	11	3	13	10
AACGTGATTTCGACCC	alt_5636_new	13	20	10	8	12	9	12	9	15	12
CTGCTTTAGAGGGGGT	alt_5636_new	0	0	0	0	0	0	0	0	0	0
TGTAGGGTGTTACGTG	alt_5636_new	97	130	131	91	129	95	132	93	108	82
TCTATCAAAGGTTTTT	alt_5636_new	41	52	36	48	43	34	65	30	56	30
TTGCTGCGCCTTTATA	alt_5636_new	59	91	71	80	98	51	102	70	129	59
CTGCATATCCACCCCT	alt_5636_new	100	119	132	112	116	82	116	94	133	89
GTTCAACGGCTTGGAT	alt_5636_new	36	48	40	37	45	27	47	36	38	27
TCATGTTCCCCTTAAG	alt_5636_new	0	0	0	0	0	0	0	0	0	0
CAGGGACGTAAGATAG	alt_5636_new	0	0	0	0	0	0	0	0	0	0
TCTTTGACAAAGCAAC	alt_5636_new	0	0	0	0	0	0	0	0	0	0
AAAGGTTAGGTGCCTG	alt_5636_new	0	0	0	0	0	0	0	0	0	0
GACTGTCACAACGTCT	alt_5636_new	19	23	17	20	21	12	31	15	20	13
CCTATTTTCCCCTTAG	alt_5636_new	1	8	2	2	16	3	4	8	8	2
GGCTCAAGTTTCCGAG	alt_5636_new	87	113	112	90	108	93	139	81	110	85
GCCCATCCTGCTCAGT	alt_5636_new	13	28	21	14	21	19	23	9	23	12
GGTTTCCTAATAAAAA	alt_5636_new	13	25	15	13	18	20	19	19	17	8
GAAAGGCTGAGACCGG	alt_5636_new	0	0	0	0	0	0	0	0	0	0
AAATGCGGGCAAGCAG	alt_5636_new	41	46	39	34	46	22	52	22	40	27
GATGCTTGGGTATGCA	alt_5636_new	0	0	0	0	0	0	0	0	0	0
GTGGGGATTGCGGTAC	alt_5636_new	0	0	0	0	0	0	0	0	0	0
GGTGGAGCAATCCTAT	alt_5636_new	61	68	77	73	70	75	85	61	74	57
TCCGGTTCAGCTATCT	alt_5636_new	15	25	23	29	39	23	32	9	39	15
CAAGGATATCATAAAC	alt_5636_new	42	43	52	38	54	36	41	40	72	40
GTCGTCGATCCTTGGG	alt_5636_new	22	25	19	26	24	22	29	15	29	14
TTTGAATATGCAACTA	alt_5636_new	29	52	46	44	46	47	72	33	75	37
CATGACTTCTTATTGT	alt_5636_new	33	28	58	23	32	40	33	24	46	22
TACTTCTTACACCGGG	alt_5636_new	61	76	59	82	95	39	72	82	93	54
AACTTGGCCACGGTGG	alt_5636_new	0	0	0	0	0	0	0	0	0	0
TGTGCCACTCGTTTTA	alt_5636_new	24	29	32	27	39	25	36	24	48	15
CCTTAGACGTCTCACG	alt_5636_new	16	19	21	10	25	25	26	15	25	18
CATGTGTATAAGCTCT	alt_5636_new	56	89	77	81	74	66	99	53	80	69
ACCCCAGTAAGTATGG	alt_5636_new	12	11	27	23	12	24	32	18	23	22
TTGTGACACAACATGA	alt_5636_new	2	3	10	3	9	6	9	5	5	8
GACTGACGCTGGCTGA	alt_5636_new	0	0	0	0	0	0	0	0	0	0
GTTCGGTTATCTCCCA	alt_5636_new	9	17	13	13	15	13	13	13	14	14
GTCTGTTATAGCCTCT	alt_5636_new	64	89	81	65	86	65	92	48	92	53
CGCTTCTGTACCACTC	alt_5636_new	11	17	11	16	15	6	15	14	20	10
CGATCCTATTGTACCT	alt_5636_new	33	37	57	48	34	27	43	37	57	31
ACCGGCCGCCGTCGCT	alt_5636_new	1	5	2	1	4	0	10	3	11	1
ATTGTAGTTATGAAAC	alt_5636_new	5	12	8	11	21	10	7	8	16	15
AGACATGTATGCGTCG	alt_5636_new	75	104	90	75	139	64	105	66	115	59
CGGTTTCTAGTGGGTT	alt_5636_new	12	15	19	11	16	19	15	25	22	9
CGAGTAATTAAGGGAT	alt_5636_new	17	14	18	15	17	18	22	20	18	16
CCCACGAGCATCAACC	alt_5636_new	16	21	15	14	16	14	11	12	11	16
TCCCATAAGGGATTAT	alt_5636_new	92	96	100	98	110	97	129	78	113	82
TGTTCCTCAGGGATTT	alt_5636_new	15	20	36	25	31	22	35	26	28	23
ACTATCTTGGGTTCCT	alt_5636_new	25	30	33	27	42	30	33	29	33	35
GTAGCCTTTTCTACCT	alt_5636_new	0	0	0	0	0	0	0	0	0	0
ACGCATAGATTCTTAC	alt_5636_new	79	157	83	92	164	61	154	66	155	63
CTTGTGTCTGGTATTT	alt_5636_new	40	62	51	32	69	33	54	41	71	30
CCTTGACCATGTATTC	alt_5636_new	32	48	56	27	49	29	49	33	52	27
GCATATTGCTTTCGTA	alt_5636_new	0	0	0	0	0	0	0	0	0	0
TAGCCCTCCTCCGCAA	alt_5636_new	7	4	8	13	8	8	10	7	10	9
CTCGGTGTTAACTACC	alt_5636_new	59	95	54	60	92	72	103	62	117	56
ACAATAAGACACCGGT	alt_5636_new	70	81	67	60	81	49	83	56	99	58
AGCTTCGTGAACGACA	alt_5636_new	41	54	57	50	58	45	63	49	55	38
AGTCAAAATCGGAACG	alt_5636_new	18	30	18	25	30	19	30	17	28	19
CACTATTGACGTAATA	alt_5636_new	0	0	0	0	0	0	0	0	0	0
TTCTAAGTTGTTAGAC	alt_5636_new	35	44	44	47	60	54	58	36	72	54
TTGTATGTGGCCACTT	alt_5636_new	0	0	0	0	0	0	0	0	0	0
ACTAACGAGGGTGTGA	alt_5636_new	20	16	25	22	35	29	38	18	26	28
GAAAGTTCCTGGGTAT	alt_5636_new	24	27	17	15	21	16	26	24	14	12
ATATATCAAAAAGTTT	alt_5636_new	0	0	0	0	0	0	0	0	0	0
GCATATTGTTCGTAAT	alt_5636_new	14	24	14	17	12	21	26	6	15	14
CGGCGTATAGCTATTA	ref_4684_reverse	38	38	57	41	34	50	32	36	34	50
GTTCGATATATCGAGA	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CTGAGAGACTGAATGG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGGTGTGGCTCTTTTG	ref_4684_reverse	138	121	166	157	123	141	109	117	139	128
CCTCTGCGTGTAAACC	ref_4684_reverse	121	101	159	116	94	106	86	104	125	102
CCCTGGCAAAATCGGC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGAGTTCATGGGA	ref_4684_reverse	105	55	66	67	50	65	45	63	51	67
CATAACCACGTATTAG	ref_4684_reverse	61	52	88	65	43	45	62	58	57	64
TGGCGCTCGCACTATC	ref_4684_reverse	8	6	9	4	11	4	2	9	8	4
CTTTCTAACATTCCGG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGCTTGACCTTAC	ref_4684_reverse	73	50	82	43	56	64	48	61	47	48
AGCTCGTGTAATGTTA	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
ATAGTTGCCCTAGTAG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
GCAATATAACCTTTCC	ref_4684_reverse	18	9	25	20	18	15	5	6	7	6
GGTCATGGAGTTATTT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGTGTGTGCAGCACCG	ref_4684_reverse	11	12	18	23	11	12	11	11	5	13
GAGGACTATAGCCACG	ref_4684_reverse	3	3	11	6	11	3	1	2	6	6
TCTGGCGCTGGGCTGT	ref_4684_reverse	5	1	3	7	2	6	2	7	3	4
CCGTGCTCAAAGAAAT	ref_4684_reverse	113	136	159	134	128	98	109	138	127	102
TGTCCATCAACAAATG	ref_4684_reverse	69	55	95	85	64	69	37	73	53	55
GCTAACTGGCACCAAT	ref_4684_reverse	34	27	40	47	31	37	26	20	35	32
TTCCGCCTTATGACTT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGGATCATGTACTGCT	ref_4684_reverse	20	13	20	18	23	26	16	28	11	21
TGTTCACTTACGTCCC	ref_4684_reverse	2	4	4	4	3	4	1	3	1	1
AACGGGTCAAGTTCCC	ref_4684_reverse	49	42	53	53	49	41	42	40	39	48
GCTGGGGCCCCTATAT	ref_4684_reverse	10	6	10	23	10	15	17	11	15	12
ATCAGAATCGAAACAT	ref_4684_reverse	152	100	181	159	108	141	134	150	136	141
ATAGAAACCTTACAAG	ref_4684_reverse	9	9	14	3	2	10	9	6	4	8
CAATTCTTTCGTGGGA	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGAGCGGCTTGTAAAT	ref_4684_reverse	24	19	27	28	21	21	14	11	23	19
CTGTATGTGGCTGTGC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCATATGATGAGT	ref_4684_reverse	207	146	242	205	152	215	172	235	180	178
GTTCGCGGCCTCTCAC	ref_4684_reverse	14	11	16	12	8	24	13	15	15	11
TTAGTTCCCCATTAGT	ref_4684_reverse	102	83	99	80	78	83	95	80	72	62
AGCCACTTGTACCCTG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AACTGATTGCTTCCGT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CTTGAGCGCTGCGCTT	ref_4684_reverse	10	20	17	16	17	17	23	10	20	11
TTCTTGTGTGGATGAG	ref_4684_reverse	375	274	528	320	280	371	286	339	327	326
CCTATGTTCGGGGATA	ref_4684_reverse	19	8	22	22	16	18	7	13	13	13
CGCTTGGCCCGGGTAA	ref_4684_reverse	12	17	25	28	29	13	25	12	27	16
CCCGACCGTTTCTTAC	ref_4684_reverse	9	12	31	19	17	13	14	8	21	19
GGTAAACCTCCGAGTA	ref_4684_reverse	62	43	69	72	59	57	47	58	63	54
TTACCCCTGTCTGCAT	ref_4684_reverse	25	19	42	21	23	29	21	20	25	19
AAAATCAGAACTCCGT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TATGTCTCGTTTTCAT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TACGGGTGCATCAGGT	ref_4684_reverse	35	33	47	44	32	43	37	42	45	34
CGAGCAGATCGTTATT	ref_4684_reverse	2	4	0	0	4	2	1	2	2	5
GCGAACTGCTCTTCTC	ref_4684_reverse	29	18	30	25	24	31	29	35	20	23
GCTATTTTGGTTATTA	ref_4684_reverse	74	36	86	62	62	69	48	62	47	63
TTCATGACCATTGTTT	ref_4684_reverse	225	186	257	194	125	185	141	162	150	171
TTATGCGTAACTCTCG	ref_4684_reverse	28	35	43	48	28	48	46	42	44	54
TCAATAATTTATGTCA	ref_4684_reverse	12	17	18	13	10	10	15	13	8	15
AGCAGGGATTACATAA	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGAAGTTATATCAATT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
GTTTTTGTTAACATTC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CTACAGCTATCGTGCC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGTACGAGTCGTTGTC	ref_4684_reverse	34	18	33	22	22	36	27	28	25	26
TGTGTACTGTCTGGCT	ref_4684_reverse	55	28	55	58	33	49	56	62	49	53
GCCCATCTTTTTTTTG	ref_4684_reverse	69	46	70	67	55	68	47	63	29	45
CACATTTGGGGTGTGG	ref_4684_reverse	39	63	54	55	64	51	58	54	61	43
ATTGCACATGTTCCCC	ref_4684_reverse	58	33	66	56	37	70	39	74	34	59
ATAGCACATGTTCCCC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TACACATAACAGCATA	ref_4684_reverse	70	75	77	72	82	61	51	65	46	76
ATTTGCGTACTAATTC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
GATATAATATAACTTC	ref_4684_reverse	42	45	58	50	29	27	41	35	28	45
CCCCTGTTGTCTAAGG	ref_4684_reverse	72	71	90	69	80	47	88	66	74	57
CTCGCGGGCCGACTCC	ref_4684_reverse	18	14	16	21	11	26	17	13	22	14
CCAGGAACTTTGGTTA	ref_4684_reverse	35	31	40	31	26	36	30	29	30	31
TGGTGTAATCAGCTTC	ref_4684_reverse	28	20	45	36	30	35	27	31	24	23
TTTATCTCTTTTCGTG	ref_4684_reverse	5	0	4	2	6	6	4	4	0	2
TACCGCGTCCTTAATT	ref_4684_reverse	15	20	18	7	18	10	16	11	17	11
ATTCTATCCGGTTAAA	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCTCGCCCGATGC	ref_4684_reverse	1	3	3	1	1	3	1	1	4	1
AGACAGCAAGTTTACT	ref_4684_reverse	65	51	79	75	30	52	42	61	64	62
CATTGTTGTTACATAG	ref_4684_reverse	22	17	24	21	17	26	13	17	12	12
TTGCGCATTTACTACT	ref_4684_reverse	32	20	36	20	25	30	16	24	27	20
CCCTCCAGTGTTTCCC	ref_4684_reverse	0	2	3	0	3	1	1	0	6	0
GGTCCGACGAGTTTCC	ref_4684_reverse	14	2	6	7	9	3	4	7	4	8
CACGATTCTATGGTTC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
GGCTTTATGTTCGGCG	ref_4684_reverse	19	9	30	13	15	24	20	14	20	21
TACTCTCTGCCGCTAG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGTGGAGTTAACTTCG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CTGATCTGCAATCCAG	ref_4684_reverse	72	54	81	64	43	68	64	69	53	57
CTGGTTTCCATAATCT	ref_4684_reverse	69	54	84	58	49	60	44	86	55	54
GACGTCTCGGTCGGGC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGCTCGCACTCCG	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTGTCTTCTTCTC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTTCACAGATCTT	ref_4684_reverse	17	12	24	24	9	13	9	21	15	17
CTGCGATGTGTTTCTG	ref_4684_reverse	13	8	8	6	5	4	9	4	7	4
TCACTCACATATTTGA	ref_4684_reverse	109	66	106	90	65	87	65	87	62	67
TGATATCCGCTACACG	ref_4684_reverse	60	27	59	55	57	60	43	44	41	53
TTACGACGGACCCCGA	ref_4684_reverse	26	14	28	21	14	28	18	28	12	12
GTAGAACCCTGTGACG	ref_4684_reverse	30	39	42	45	28	37	25	26	29	45
TAGACCATCTGCCACA	ref_4684_reverse	37	23	22	37	12	28	39	38	34	20
GATGTCCTGGTTCGTG	ref_4684_reverse	53	36	55	59	37	59	42	48	46	54
TAGCTGATGTTCAGTT	ref_4684_reverse	34	29	51	41	46	31	25	32	46	35
GAGAGAAGATCTTTCC	ref_4684_reverse	33	26	67	52	29	48	42	53	37	45
CGATCAATACCTGGGC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CACTTGCCATTCCTGT	ref_4684_reverse	1	2	3	3	4	4	2	2	4	3
TAAACAACTAATACGT	ref_4684_reverse	21	9	24	22	17	24	19	23	13	15
CGCAGCCTTTATTTCT	ref_4684_reverse	12	4	10	17	7	10	6	3	1	12
ATAGTGAGCCCGATGG	ref_4684_reverse	42	34	56	46	27	35	22	37	25	41
CCCGGGTGTTTCATCT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CCCACGTTTTGTTAGT	ref_4684_reverse	100	97	163	120	87	124	110	144	114	128
AATTCTGCAGAGAGCA	ref_4684_reverse	31	30	34	43	26	40	21	21	22	21
GGGACCGCAATCATAA	ref_4684_reverse	82	67	103	65	43	63	58	63	78	65
TCGATGCTAGAGACGT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
ACATCTTCACGCCTAG	ref_4684_reverse	61	54	68	62	51	48	54	42	39	37
TCTTTTATCGTGTCTA	ref_4684_reverse	4	6	1	5	8	8	7	4	5	12
TAACGACGCTGATCGT	ref_4684_reverse	102	55	73	97	63	82	59	79	91	58
TCTCGCGCTTAGAGGG	ref_4684_reverse	4	11	7	10	18	10	5	5	8	17
GTTAGCTGCCATTCCA	ref_4684_reverse	51	43	70	45	35	47	27	38	38	55
ATAAAATTCACAAGCT	ref_4684_reverse	199	127	189	173	146	146	157	143	133	144
AAAGCGTTACTCGTCT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AAACTCTCGAGATTGA	ref_4684_reverse	19	15	36	21	13	23	14	17	19	20
TGTGTTAGCTGAGATT	ref_4684_reverse	10	22	32	19	24	22	23	19	39	24
CCAGCTGGTGCGCCTA	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGGTGTTTTAGCA	ref_4684_reverse	2	4	3	3	1	4	5	1	9	1
TTAGTGCTTTTCGGTA	ref_4684_reverse	52	33	54	43	41	42	46	35	43	45
CCGGTAGACCGTGATT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CTATGCGGAGTACTGA	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
AGCCTAACGCCACTGG	ref_4684_reverse	5	6	7	4	11	10	11	6	8	6
TGCTCTTTCAGCGACT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
CGTCGTCCTTTATGCT	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TTCCTCGCCTCGATTA	ref_4684_reverse	11	17	22	16	6	15	17	23	14	9
TCGGTTGAGTTGGTGC	ref_4684_reverse	0	0	0	0	0	0	0	0	0	0
TAGTTGGTTAGCCGAA	ref_5751_new	25	17	29	21	22	11	33	12	24	28
CGCGGTCTGAAGCCTT	ref_5751_new	1	2	1	2	1	0	0	0	1	0
GGCAACTCGCCTGGAG	ref_5751_new	0	0	0	0	0	0	0	0	0	0
GCTGGCAGAGTCACAG	ref_5751_new	0	0	0	0	0	0	0	0	0	0
CGTAACGTGCCACTCC	ref_5751_new	14	13	12	16	19	18	14	10	9	10
GCGTGCAATAGTCTTT	ref_5751_new	28	31	50	23	41	25	47	39	48	31
GTGGACATTGGGTTTT	ref_5751_new	14	34	20	10	24	13	37	15	29	11
GCTAAATTTATACGGG	ref_5751_new	134	135	145	142	155	144	149	130	146	125
GCGAGGTCCGGGGAGC	ref_5751_new	0	0	0	0	0	0	0	0	0	0
GGCATGACCAAACAGT	ref_5751_new	4	3	2	3	0	1	2	3	3	2
ATCCAGGACACCATTA	ref_5751_new	9	9	13	11	10	15	17	8	19	9
TCCCCCTGATGACCTC	ref_5751_new	42	27	51	41	37	45	29	25	27	31
CTAATCTGGGTTACCT	ref_5751_new	89	100	108	99	88	79	130	78	128	77
ATTGTTTGATATATTC	ref_5751_new	35	39	40	31	28	21	35	27	35	27
CAAAGAGTACTCTGAG	ref_5751_new	28	40	50	37	44	25	38	32	50	31
TGGTTCACGTTGTATA	ref_5751_new	8	18	14	21	13	18	18	20	9	15
TATCCCGCCCTAATAT	ref_5751_new	17	18	12	13	22	10	26	10	25	21
CATTCGTGGTGCATGG	ref_5751_new	32	40	54	46	48	39	40	43	50	24
AACGCCTTCACGCTAA	ref_5751_new	35	28	41	53	31	41	47	31	32	25
TGGATCTGGTTATTTA	ref_5751_new	183	213	226	214	222	177	232	176	215	204
AGTCTTTGTGGGTGTA	ref_5751_new	0	0	0	0	0	0	0	0	0	0
CCGAGCTGCTCGTTGT	ref_5751_new	26	19	22	21	34	20	33	12	26	10
TGCTCGGTGTTATTCA	ref_5751_new	24	30	35	26	36	27	35	19	35	32
GTCATGTTTTTAATAG	ref_5751_new	66	53	70	51	79	57	61	48	65	39
CGGTCGTCTTATGCGA	ref_6057_new	6	6	5	4	11	3	15	2	9	6
GCTAGGTATAAGCAAC	ref_6057_new	10	18	18	26	12	15	14	15	22	11
CTTGTCGCTACGACAA	ref_6057_new	16	23	18	29	30	21	29	18	26	25
GGTCACCTGAGTGTCC	ref_6057_new	0	0	0	0	0	0	0	0	0	0
TATACTACAGCCCCTT	ref_6057_new	12	15	11	19	14	17	13	17	18	7
GTTTCAGAGTCCCATT	ref_6057_new	0	0	0	0	0	0	0	0	0	0
GGTTCTAACCGGGATC	ref_6057_new	0	0	0	0	0	0	0	0	0	0
GTATTTGATGAAAGTT	ref_6057_new	22	20	21	15	24	13	18	20	25	18
TAACGGGTTAACTCTT	ref_6057_new	1	1	3	3	1	0	3	0	0	1
TAACATAGGAACTTGG	ref_6057_new	0	0	0	0	0	0	0	0	0	0
AACGCCGCATGCTTGA	ref_6057_new	0	0	0	0	0	0	0	0	0	0
CTCGTATTCTTCTAAA	ref_6057_new	5	4	14	9	20	7	16	6	9	7
GACTTGAAGCTTTTGC	ref_6057_new	25	33	29	30	48	25	29	30	29	26
GGAGTTATACACGGTC	ref_6057_new	0	0	0	0	0	0	0	0	0	0
TGTGAACAGGCTTTTG	ref_6057_new	10	8	5	7	12	6	11	6	11	9
TGGTGCTACTATTTGA	ref_6057_new	19	14	13	21	11	6	20	18	24	11
CTTAAGCCCCGACGTT	ref_6057_new	0	0	0	0	0	0	0	0	0	0
GCTGAGCATCATGTAA	ref_6057_new	46	47	41	32	68	33	58	29	52	26
ATACTGTTACGAGTGC	ref_6057_new	0	0	0	0	0	0	0	0	0	0
ATTCAATATTTGGTTA	ref_6057_new	7	12	11	9	9	6	16	7	22	16
TCTTTTTCTAGCCTTC	ref_6057_new	7	7	7	8	7	2	8	8	5	6
AGTTGACACCGTAGAG	ref_6057_new	5	13	9	10	9	8	4	4	11	6
GCGCTTGTAGCTTCGG	ref_6057_new	9	9	8	11	13	6	14	4	9	7
TCTATGGTCAGTACAG	ref_6057_new	29	40	46	32	36	23	35	31	38	18
CGTGTATTCAGTTGCT	ref_6057_new	2	2	0	0	2	3	2	2	7	2
ATGAACCTTGATCATC	ref_6057_new	11	15	18	9	20	15	24	10	18	12
GGTAATAATTATAGTT	ref_6057_new	0	0	0	0	0	0	0	0	0	0
TCGTCTTGGGCTGAGA	ref_6057_new	0	0	0	0	0	0	0	0	0	0
TGGTTAGCGTGAGGCC	ref_6057_new	7	11	13	14	17	9	8	13	9	6
TACCAGGGAGCCTCTT	ref_6057_new	5	7	3	10	6	5	8	5	5	9
CGAGCGTTCGGTTGCG	ref_6057_new	4	13	8	3	12	2	8	2	13	6
TCATGCTTGATAACCG	ref_6057_new	68	79	89	79	71	75	96	65	101	60
GGCTGTAATGACGTGT	ref_6057_new	19	33	28	31	25	22	38	11	35	23
CGGCACTAATGCTTTC	alt_940_RC	27	16	43	39	15	30	17	25	17	24
CCAAATGGACTCACTC	alt_940_RC	0	0	0	0	0	0	0	0	0	0
GTGCCTGATCCTGATC	alt_940_RC	56	24	52	62	20	41	23	29	19	45
ACAGGGCGGTGCGACC	alt_940_RC	90	57	146	124	60	98	69	107	74	98
GTGTTTGCAGCCATTA	alt_940_RC	17	7	31	21	9	14	10	12	13	17
TAATCCGTATCGTACG	alt_940_RC	12	3	16	8	4	10	7	12	8	10
TCCACCATCAGGGAAC	alt_940_RC	7	1	14	10	6	13	1	7	2	6
CCTTTTTTGAAGTTAG	alt_940_RC	12	11	19	28	9	19	10	24	7	12
GTCTAAATACCCCGTT	alt_940_RC	16	16	32	26	27	25	31	18	35	13
GCCGCCGCTTTTTGGG	alt_940_RC	8	2	7	7	2	8	3	10	7	3
CCACGGTGTCACCGTA	alt_940_RC	32	17	47	36	17	31	16	35	26	40
ACGTCTCTTTCTATCG	alt_940_RC	54	19	79	57	16	65	12	61	18	45
CTATCTCCAGTAGTGT	alt_940_RC	36	21	50	42	13	40	31	32	19	36
ATGCCATACTCTAGAC	alt_940_RC	0	0	0	0	0	0	0	0	0	0
GTCCACTCTTTTAGTA	alt_940_RC	6	6	10	6	2	8	12	4	5	5
CACTAGGAATTTTTTT	alt_940_RC	117	36	130	144	60	100	46	105	50	115
GCGCTATGTTTGTTGC	alt_940_RC	0	0	0	0	0	0	0	0	0	0
CTGTATTCCGTGATCC	alt_940_RC	0	0	0	0	0	0	0	0	0	0
TCCATGAGTATGGTCG	alt_940_RC	22	15	34	31	12	17	13	25	23	20
GTTATAATCTTGATCA	alt_940_RC	0	0	0	0	0	0	0	0	0	0
AACCTTATAAACGCTT	alt_940_RC	49	36	78	61	40	48	45	67	33	57
CACCTGTCGAACAAGA	alt_940_RC	95	50	114	88	48	96	41	93	40	64
GTTCAGTCGCTTTACC	alt_940_RC	0	0	0	0	0	0	0	0	0	0
CGAACTTTTCATTCTC	alt_940_RC	23	8	38	27	24	34	19	36	18	30
ATGCTTTAGGGGTAAC	alt_940_RC	4	1	3	4	0	6	1	2	0	0
GAAGGACTCGTCTGCA	alt_940_RC	0	0	0	0	0	0	0	0	0	0
TGGAGCACGCCTTTGC	alt_940_RC	0	0	0	0	0	0	0	0	0	0
ACAGAATCACCGTCAC	alt_940_RC	148	47	174	171	59	125	82	141	66	117
TTAGTTATAATAGCGT	alt_940_RC	19	7	22	28	13	26	15	15	10	12
TTGTGTGAGCCGGGAC	alt_940_RC	127	82	191	146	68	136	75	144	95	118
TCGCATGTGCTCGGCT	alt_940_RC	0	0	0	0	0	0	0	0	0	0
AGCGCTATGCATTGTT	alt_940_RC	28	8	29	21	15	29	12	23	9	12
ATTGAATTTTTATGTC	alt_940_RC	196	83	278	246	83	227	90	231	97	216
TCTGATGATTCGTACC	alt_940_RC	75	33	67	74	31	63	39	66	37	55
TGGCGATGGGGACGAT	alt_940_RC	116	34	159	152	51	122	45	92	54	103
TCATCTCGTCACGAGG	alt_940_RC	15	5	15	31	8	20	7	25	8	12
CTCATGCCGTCCTCAT	alt_940_RC	3	6	5	4	3	4	5	2	8	5
AACCTGATCACGTCCG	alt_940_RC	10	4	9	12	5	9	5	10	1	5
TTTAGGGATCCCGCCC	alt_940_RC	102	57	116	107	59	103	45	92	57	89
TGCCATGAGCAAACTT	alt_940_RC	0	0	0	0	0	0	0	0	0	0
CGGCTACCGGTTGGCA	alt_940_RC	108	41	146	155	55	110	56	123	66	112
AGGTTCATCGTCTCCT	alt_940_RC	23	3	27	28	9	14	16	19	20	16
TGTACTGTCAGATTCA	alt_940_RC	59	33	83	78	34	59	41	55	42	42
AATAAGCTGATGTAGT	alt_940_RC	59	37	77	57	31	44	21	55	28	45
CTTTCTATATTACTAT	alt_940_RC	0	0	0	0	0	0	0	0	0	0
CGAAATCCCCGGCGCG	alt_940_RC	185	79	234	193	79	180	74	166	73	156
TAATAGAAACATTTGT	alt_940_RC	68	28	97	108	37	65	33	80	21	87
TCCACATTGCCATAGT	alt_940_RC	55	33	78	57	26	57	44	45	36	39
TTAGTCTTTCTATTTG	alt_940_RC	5	4	6	8	5	1	0	3	3	3
GCAATTGGTATCGGAG	alt_940_RC	11	7	14	8	3	8	0	9	2	8
ATTGGGAACCGACGTT	alt_940_RC	0	0	0	0	0	0	0	0	0	0
CGCATAAACGTGATCC	alt_940_RC	334	153	435	391	168	361	177	321	158	315
GTAGTTTCTATTTTGG	alt_940_RC	110	43	130	98	27	87	35	89	29	89
CGCCACGCGGTCCTTT	alt_940_RC	24	12	33	19	4	17	12	18	8	20
AAGGGTCAGTTGATAT	alt_940_RC	13	3	7	8	3	11	5	10	2	5
GTCATAATTTTGATAG	alt_940_RC	0	0	0	0	0	0	0	0	0	0
ATGTTTACATCGCTTC	alt_940_RC	24	11	33	23	18	26	13	20	15	20
CTTCATATGACAAGCG	alt_940_RC	0	0	0	0	0	0	0	0	0	0
GCGTATGATTTCTGCA	alt_940_RC	8	6	17	22	4	4	8	15	8	8
GTGGGTTAGTTCGAGT	alt_940_RC	151	83	194	176	89	175	85	183	79	119
CCCCACCCGGAGTGTC	alt_940_RC	0	0	0	0	0	0	0	0	0	0
TCCAGCAGTATCTGTG	alt_940_RC	30	14	52	35	16	33	20	30	24	23
GGGTTCATTCACTGTG	ref_2482_missing	48	104	54	54	114	47	146	40	127	51
AAATCCATGTTAGTGA	ref_2482_missing	3	8	10	2	17	5	13	5	14	4
CTTTTCTATCATCTCT	ref_2482_missing	51	88	41	35	99	39	103	49	101	32
TCTTTATCCTGACAAG	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
GGCCCTCTTGTGAATT	ref_2482_missing	21	76	35	19	50	25	59	19	83	20
ATGTTTTGTAGCCCTT	ref_2482_missing	4	14	6	4	17	6	11	5	14	3
AATCGTCTTGACAACA	ref_2482_missing	7	21	14	13	19	1	15	7	17	8
TGGTGATTACGCCGTC	ref_2482_missing	5	15	15	6	12	3	19	13	16	7
GTCGTGGTCTTGCAAA	ref_2482_missing	7	17	7	15	16	15	17	5	22	6
TGGTAGGTATTCGGTC	ref_2482_missing	2	8	7	3	4	4	10	4	9	4
TATGCATCGCCGCAAG	ref_2482_missing	24	46	15	20	35	15	40	10	46	11
GGTTTTAACGGTTCTT	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
ATGTCTAGGGATTAGC	ref_2482_missing	39	89	41	41	75	36	79	34	91	44
TTGAAACCGTAGTGGG	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
CCCCACAATCCGGTTA	ref_2482_missing	9	26	10	17	40	9	39	12	26	15
GACAATAGCGTCGTTT	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
CTCCATGCTGTTCCCG	ref_2482_missing	1	11	3	4	18	2	20	3	19	4
AGCAGTCGCTATTAGA	ref_2482_missing	7	12	3	9	24	8	10	5	20	5
CTATCTTGTGCGCGCG	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
TACTAGCGATCAAATG	ref_2482_missing	5	7	2	0	6	4	6	0	7	1
TGTTCCTGTACGTTGA	ref_2482_missing	2	19	9	8	11	5	14	5	15	3
CGGCGAGCGTTCTATA	ref_2482_missing	35	77	43	37	95	35	87	38	76	34
GTTCGCCTGTTGCGAT	ref_2482_missing	13	36	8	16	39	9	43	9	29	14
CCGCCACGCCTGTCAA	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
CTTATATTGCCGAAAT	ref_2482_missing	6	2	0	4	3	2	7	4	6	2
CTGGATACCATGTCTA	ref_2482_missing	9	26	12	10	38	8	37	16	32	14
TTTTGTGGCCCAAGCA	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
TACTACAGATCGAAGA	ref_2482_missing	0	1	4	0	1	0	0	0	2	3
TTTGTGGAGATCCGTC	ref_2482_missing	10	21	12	9	18	7	20	16	22	14
TGACATATCCGGTCGC	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
ATCTCTGTCGCTCTAA	ref_2482_missing	15	36	18	17	39	21	35	15	37	18
TTACAGGGGCTAATTC	ref_2482_missing	8	14	10	3	15	7	11	2	4	6
CTGCAGGTTCATACTT	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
CACCTTTCTGGATGGA	ref_2482_missing	18	40	19	22	37	20	34	10	51	20
GTACGCCGGACCGTCC	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
ACCGTTATTGGATCAT	ref_2482_missing	3	3	2	3	7	5	7	5	4	0
TTCGCCTCTCCTTAGA	ref_2482_missing	4	14	3	5	23	6	26	3	26	6
ACTCTAGTGAGCATGG	ref_2482_missing	4	3	10	6	8	10	24	9	9	5
TCATGAATGCTGTATT	ref_2482_missing	10	17	5	7	10	7	18	4	12	5
AACTTTGTGTACTTCT	ref_2482_missing	24	16	30	20	7	21	13	9	20	17
CGCACCTTTTATGCAT	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
AAGCCTTCCATTCCCA	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
GGATCGAAACACTTTA	ref_2482_missing	0	0	0	0	0	0	0	0	0	0
TTGACGTGCTTCATGA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CCCTGCATGTACCGTG	ref_5811_new	54	48	57	46	52	39	54	45	62	39
GAAACAGCGATACCGT	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CAATTGTTCGTGATCG	ref_5811_new	70	123	72	71	110	59	109	55	115	62
TGTAGGACATTTTCCT	ref_5811_new	11	23	17	9	19	11	15	11	16	16
TTTGCGGAGAGTCAGG	ref_5811_new	38	36	35	19	23	34	32	21	49	17
TAGGTATAGGCCGCGT	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TTGCCAATCTCGGTAC	ref_5811_new	23	21	27	23	26	19	25	13	19	17
AAAAAATTTTTGTTGG	ref_5811_new	20	24	18	21	25	14	13	30	25	28
TCGCATACTTGCATGA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
AAGTTCTCCTAACAGC	ref_5811_new	12	42	18	27	30	18	42	24	51	27
TTTTGTTAGGCAGGAG	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CTGTCTCCTATTAGGT	ref_5811_new	17	35	28	25	30	18	24	19	25	16
TAGTCATTGGGGCGAT	ref_5811_new	40	46	40	33	50	26	47	58	60	28
GAACTTATAATAGCCA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CGTGCCCGGCTTGTAA	ref_5811_new	3	5	11	10	5	6	9	3	3	6
TTATCGTTTTCCGTTC	ref_5811_new	34	34	27	27	26	30	25	16	38	27
GGTTTACTCCATTCAT	ref_5811_new	15	19	26	16	17	9	14	14	22	9
GTGTATGTTCCAAGAT	ref_5811_new	18	32	24	27	29	14	24	17	28	15
GAACTCGGTTTTGTTA	ref_5811_new	25	36	33	37	43	26	46	30	41	33
GTGCCTCCCGGCCTAA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TGTTGTTGCACATTCC	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TATCTGTTACTATAGC	ref_5811_new	75	93	85	70	83	63	101	54	94	63
GCTGCAACATTTTCGT	ref_5811_new	42	89	61	62	60	55	79	58	91	50
TATGCTCCTCGGCTTA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TTACTAAGTACTCGCT	ref_5811_new	11	15	11	9	12	13	10	12	19	13
TCATAGCCTTCGGGAG	ref_5811_new	0	0	0	0	0	0	0	0	0	0
GATGTTTTGACTAGTG	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TGTATATGGCCTAGCA	ref_5811_new	50	65	94	58	65	63	71	46	73	58
TATCAACCAGCACTGT	ref_5811_new	16	29	19	25	22	24	32	20	32	17
CGCTGCCGTTAAGCTT	ref_5811_new	64	80	61	59	73	59	96	58	82	52
CTTTCTCGGTCAAGTT	ref_5811_new	15	38	20	26	10	20	27	15	18	13
CTTCTTTTATTAAGCA	ref_5811_new	28	34	21	29	30	14	36	19	29	13
TTTCGGAGTTGCTCCG	ref_5811_new	24	28	25	19	23	18	30	16	14	15
GGACCTAATCCATCTC	ref_5811_new	77	91	87	92	92	76	102	60	100	69
TCAACCTTCGAGGTGA	ref_5811_new	0	1	1	2	2	0	4	0	1	0
CCCTCTCCAGTTGAAA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
AACTTTCTTCAGATCA	ref_5811_new	81	93	94	82	115	84	103	74	92	80
ACGCCAAATTACCCGA	ref_5811_new	3	14	8	8	11	8	8	9	7	10
TATAGATCTTGATGAT	ref_5811_new	68	71	53	47	67	60	89	50	87	49
TAAGAGGGAACTCCTA	ref_5811_new	25	30	32	23	32	24	40	26	38	19
GGCCTATCTCTAGTTT	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CAATAAGGCGGCACGG	ref_5811_new	20	30	28	38	37	24	37	23	33	27
TGTATCGGGTCCTTTC	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CTACATCTGTAATATC	ref_5811_new	8	10	5	7	7	2	6	3	5	7
TCTATCTGGAGTCTGA	ref_5811_new	8	12	3	8	12	8	14	6	10	4
GTAGTATTGGTGTACG	ref_5811_new	73	77	80	61	68	69	79	64	92	54
TATGCCATAACCTGAT	ref_5811_new	0	0	0	0	0	0	0	0	0	0
ATGGTAGGGTTAGGTT	ref_5811_new	10	24	16	16	23	14	19	17	30	9
GATTGGGTTTGCGGCA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TTGTTATTCAAGTTCG	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CATCTTCTAGAACAGT	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TTCCCAATAGGGCCGT	ref_5811_new	25	44	39	23	40	20	35	27	35	21
ACAAAGGGGGTTACGT	ref_5811_new	22	26	26	19	18	30	34	24	32	29
GCTCTTTGCGAATAAA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
TGGATATTGCCGGGAG	ref_5811_new	5	9	8	4	11	2	15	5	13	3
CTTACTTTCATGTGCC	ref_5811_new	16	21	11	8	11	10	23	9	21	13
GGTACGATCATCCTGG	ref_5811_new	44	47	44	52	49	38	64	48	55	41
GCGCTACTTGGGTCGA	ref_5811_new	0	0	0	0	0	0	0	0	0	0
GGTGGTTCGTCCTACG	ref_5811_new	6	8	19	10	14	13	14	11	18	12
CACTTTTGCGGAATAG	ref_5811_new	11	11	6	5	18	5	13	4	9	8
TGCCCCCCCAGTCCAT	ref_5811_new	73	73	85	94	80	80	85	74	82	63
TTTTGATGCCCATTCA	ref_5811_new	65	82	78	49	84	61	98	54	99	51
CTTCTTTACGAACTTT	ref_5811_new	73	115	81	95	126	90	117	78	114	85
GCCACATCAACAGGGA	ref_5811_new	10	15	14	12	14	8	23	10	10	9
GATACTATTCCGGAAT	ref_5811_new	0	0	0	0	0	0	0	0	0	0
CACACTCTTCCATGCC	ref_5811_new	0	1	0	0	0	0	0	0	1	0
TCGTCGCATGCTTCAT	ref_5811_new	0	0	0	0	0	0	0	0	0	0
AGCTGTGTATATCCCT	ref_5811_new	6	10	11	10	4	9	14	4	5	4
CCAGGAGCTCCATTTG	ref_5811_new	22	28	21	21	25	26	35	24	35	16
GTTGTCGTGGTCACAT	ref_5811_new	43	64	37	30	47	39	48	42	65	34
TCGGGGTGTTTGTTCG	ref_5811_new	5	9	6	5	12	4	7	10	9	3
ACTTTCGCTCCACAAT	ref_5811_new	8	8	9	11	9	4	11	14	9	12
TGATGATGTGTTAGTC	ref_5811_new	5	7	7	3	6	2	3	6	1	6
CGAAGAGCGCCCTTAG	ref_5811_new	104	141	122	109	148	112	141	112	142	89
CGTCAACATCTGTGAG	ref_5811_new	10	14	9	15	10	11	16	20	12	11
GCATTACAGTATCCCA	ref_5811_new	25	15	21	22	19	21	20	20	19	15
TCCGACTTGAGATGCC	alt_5187_missing	16	8	26	24	13	16	16	14	14	9
GTCGTCGATAACGGCC	alt_5187_missing	92	77	82	93	81	86	75	88	74	68
TTCATTCCTACATAAT	alt_5187_missing	31	26	39	25	32	46	31	39	26	23
TAGTAATCGGCTTGGG	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
GAAATATCAGTTAGGT	alt_5187_missing	3	1	3	3	1	2	0	2	3	2
CTTTTATTACAGATTC	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
GATCATCTCCCACGGG	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
ATGTTTTATGACCGTA	alt_5187_missing	247	207	302	303	230	232	242	229	265	268
TTGAGTATGGCGTGGT	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
GTCCCCACTTAAGCCG	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
CACCCCTCTTCTATTT	alt_5187_missing	33	28	24	30	37	27	37	28	52	19
CCGGCATATTTAAGTA	alt_5187_missing	80	61	105	87	69	88	76	68	67	65
AGTACGTCCATTGGTC	alt_5187_missing	33	34	54	37	61	27	46	42	48	50
CTTCCGGGAAGTCAGG	alt_5187_missing	48	36	35	39	35	27	33	27	28	43
CTTAAATGCAGTGTTT	alt_5187_missing	16	16	21	12	19	26	19	24	18	23
AGGTCCCTTATCTAAA	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
TCCATGTGTAGGTCTT	alt_5187_missing	4	4	4	3	0	2	3	6	9	6
AGATGTGCCACAATTA	alt_5187_missing	30	48	54	45	74	34	69	38	81	40
CGAGGTTATTCCAATC	alt_5187_missing	14	12	16	5	14	17	10	13	15	12
TAGTTTTTTCGTTGAT	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
TCCGACTGCTAGTCAT	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
CCGTCGTTTTTGCGTC	alt_5187_missing	3	2	4	6	4	1	2	0	8	4
GAGCCCGGCCTGTGTT	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
CGTTGCAGCTTTGCCC	alt_5187_missing	17	19	22	13	22	11	29	23	10	10
TTAACTGTTTCGAAGG	alt_5187_missing	29	20	35	20	27	22	26	14	33	20
AAAGTCTAGTGCAACG	alt_5187_missing	118	132	131	135	98	104	90	87	108	94
CCTCTCCATCAAGGTC	alt_5187_missing	0	0	0	0	0	0	0	0	0	0
TTCATTTTTTGCGTTC	alt_5187_missing	40	67	58	65	59	52	53	41	55	43
CTTGTAGGCACGTACT	alt_5187_missing	22	13	52	39	18	34	29	22	30	18
GTCACTTACGCTAGCG	alt_5187_missing	22	18	25	13	25	16	23	17	25	21
CATGGTCGGGTTCATG	alt_5187_missing	110	96	78	83	61	85	87	95	77	66
TGGGCGCGGCCCGGGC	ref_2349_upstream	41	34	43	33	30	37	38	23	46	27
CATCAAGCTGGTTTAT	ref_2349_upstream	33	45	38	23	46	38	56	41	64	30
CGGATATAGTGTCTGC	ref_2349_upstream	21	37	18	21	14	22	38	17	42	22
GACATTTGGTTTAGCA	ref_2349_upstream	36	46	32	22	57	35	53	38	57	24
TTAGCCTTGTTATTGC	ref_2349_upstream	10	17	7	6	8	6	12	7	14	6
CCGCCTTAAGGACGGC	ref_2349_upstream	15	55	25	18	75	18	67	17	71	17
CGCGTACAGTTGTCAG	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
GCGAAGAACCTCACGG	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TCCATTTTCTACCATC	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
CTATTTTACAAGGCTC	ref_2349_upstream	30	42	38	36	32	26	54	36	48	37
TGCACGGGAATTCCGC	ref_2349_upstream	14	24	13	14	15	12	16	11	22	13
ATGGGCGTTGTTGACT	ref_2349_upstream	121	154	115	100	157	98	184	82	183	79
GCGAGTTGGTTATATT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TTCGATGACAGTTAAG	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
ACCGCAGGCTGTTTCT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
GATGAGATGGCCACCC	ref_2349_upstream	19	15	12	17	13	16	14	7	19	19
TCCTTTGCTCCCCTAT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
AGAATAGGATGCTCTC	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TATCATGCCCCAATTT	ref_2349_upstream	23	33	34	19	20	26	30	7	20	15
CAATCTCACGAGAAAG	ref_2349_upstream	44	64	42	38	54	36	55	38	64	39
TCAGATTCTTAAGCCT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TCGGGTACTATAGGTC	ref_2349_upstream	6	8	4	2	7	4	13	6	11	5
GCGACAATTCTCCACT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
AAGTGGCGAACTTTTA	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
CGGTATATCAACGAGT	ref_2349_upstream	8	13	6	7	11	11	14	6	9	11
GGTGATTCACGATCCC	ref_2349_upstream	11	9	4	6	16	5	15	5	9	9
TTGGCCTCTCAATGGG	ref_2349_upstream	19	31	22	34	47	40	50	27	55	24
ACCACCAAGTCTGCGA	ref_2349_upstream	18	10	12	12	16	13	16	14	14	3
TCGCCGAAGTTGAAAA	ref_2349_upstream	8	8	4	1	3	7	14	5	15	4
TGTATCGGCCCTTCCG	ref_2349_upstream	82	102	104	88	98	81	103	72	112	76
TTCGCCGTTGGCAATA	ref_2349_upstream	6	4	7	1	4	4	7	2	8	3
GCCGGCAGCTCTTCTC	ref_2349_upstream	58	90	72	56	81	48	98	61	79	46
ATATTTTTTTCTGTTC	ref_2349_upstream	26	25	28	42	32	28	30	22	38	36
AATATTGCTTAGGCTT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
ACATTCTGGATGTGTA	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
AATTTTCCTATCGTCT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
CTGAAATGCGACCCGG	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTTTTTAATGTCA	ref_2349_upstream	31	7	39	47	15	19	14	41	15	40
TGTTTGTATCGCCTAA	ref_2349_upstream	14	15	16	18	31	18	33	14	23	16
GTATTTATGGTATTTT	ref_2349_upstream	16	28	31	21	45	33	41	36	52	17
GCTTCTATACACTCTA	ref_2349_upstream	12	24	10	10	20	8	20	4	28	7
GATAATAGATTTGGTC	ref_2349_upstream	4	6	2	6	7	11	7	3	9	3
TACCTACCGGGATCTC	ref_2349_upstream	9	30	7	12	22	8	39	7	34	7
CTCGTTTTTAAGCCTT	ref_2349_upstream	38	68	64	35	68	31	67	52	80	35
CAAAGATAGGCACAGA	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TCAATCGTATCTAGCC	ref_2349_upstream	15	21	16	5	18	9	19	7	18	10
TATAGCTCATCTTCCT	ref_2349_upstream	3	7	6	7	10	8	12	5	10	11
AGGTGGAGCTTACGAA	ref_2349_upstream	62	108	69	97	105	67	135	69	125	61
TATCCTGTCGCGACGC	ref_2349_upstream	12	6	13	13	14	9	17	7	13	12
CCTACACATCTATCGT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TAGTGACATCCCGGCT	ref_2349_upstream	2	4	4	4	1	3	4	0	3	1
AATAGTTTAAATCAAT	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
CACTTAAATTACAACA	ref_2349_upstream	10	27	13	13	28	14	29	17	29	8
ACGTTCGAGCTGTGTC	ref_2349_upstream	24	40	26	10	26	23	36	19	32	12
CCGCCGACGTGATTCA	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
GATATAGGTAATATCT	ref_2349_upstream	7	11	15	7	8	5	10	14	18	6
ATTCATTATCCGGCAT	ref_2349_upstream	38	72	69	45	81	45	104	49	83	54
CACCACCGCTTACGCG	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
ACGTATCGGACACGAT	ref_2349_upstream	26	36	29	14	29	12	30	17	33	26
CCAGTAGATGTCCCGG	ref_2349_upstream	31	26	47	40	43	30	36	27	50	27
CCGCTTATTCCCGGGC	ref_2349_upstream	3	11	0	5	4	2	11	2	14	2
ACAGTTCGTTCGCTTC	ref_2349_upstream	8	14	18	9	21	14	24	17	22	13
AGTGCGCTGTTTACGG	ref_2349_upstream	56	79	55	59	103	56	83	58	90	55
GAGCTAAATACCCGAA	ref_2349_upstream	0	0	0	0	0	0	0	0	0	0
TTCAGAATTGCAATTT	ref_1150_RC	11	2	10	13	4	9	3	6	3	9
CCCCACTAGATCGCCC	ref_1150_RC	139	56	177	164	71	129	49	121	54	125
TTCCCGGCTGCGTCCG	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
GTCTCCCTGGCTTCGT	ref_1150_RC	65	27	80	93	33	85	28	67	42	71
AATCACGAGTCCGTCA	ref_1150_RC	2	1	7	3	3	8	3	6	0	6
TTTGGGTAGAAATGGG	ref_1150_RC	7	2	6	5	1	6	3	4	1	2
CCATAGATCTAATTTG	ref_1150_RC	100	39	120	136	52	109	50	127	39	99
TTGTGGCAATCTACGC	ref_1150_RC	22	7	30	39	10	36	24	31	24	33
GATCTACCCAGAGGAG	ref_1150_RC	278	125	296	254	151	258	133	282	118	282
GTAGTTACGGGTTTCC	ref_1150_RC	22	11	30	33	17	28	8	28	11	21
GCTTCGGAATATCCTG	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
ACCGATCACCTCGCAT	ref_1150_RC	101	48	113	74	76	119	63	89	66	94
AGTCCTATCCCATATT	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TAGGTTTGAGGTCTTT	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TCGATGAGTTTTCGGT	ref_1150_RC	193	70	232	168	93	193	93	178	111	144
GTGATATCATTTCCGT	ref_1150_RC	275	99	310	300	112	271	104	257	102	284
GCTATTCCAGGGGGAT	ref_1150_RC	13	8	10	10	6	7	2	6	8	12
ACCAGGTTATTTAGCT	ref_1150_RC	48	23	72	85	25	70	37	54	25	47
AAAGCACTACTTTTTT	ref_1150_RC	31	3	36	20	8	23	7	20	10	28
AGATTGCAATAGCCGG	ref_1150_RC	132	57	124	127	63	113	71	100	55	146
CTTTAAGATCCTTTTC	ref_1150_RC	282	76	309	257	107	235	100	257	98	250
GAGGCGTTTTTATTGG	ref_1150_RC	60	35	69	70	27	60	21	63	33	61
CAATAACCCAAAACGT	ref_1150_RC	33	17	38	26	17	32	8	47	14	32
TTCCTTGTTGCAAAGT	ref_1150_RC	10	14	25	11	11	20	6	9	10	21
TCACTAGCATGTCGTA	ref_1150_RC	126	63	163	123	52	126	58	141	61	112
GGACAAGCATTCTTTG	ref_1150_RC	44	14	60	42	23	40	20	40	17	26
CCCCTATCAACGTCAC	ref_1150_RC	36	17	24	13	15	22	8	23	13	15
GGGCCTCGATAATTAC	ref_1150_RC	250	83	273	245	105	242	93	247	99	205
CCAGTTTGTATTAGGT	ref_1150_RC	154	45	202	141	83	117	68	132	98	138
ATTCCTGGTCAGCTGT	ref_1150_RC	15	20	9	5	18	8	19	15	27	7
CGCCCTACCGGATCCC	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TTGCATGATGGCTTAT	ref_1150_RC	58	31	94	82	39	85	32	75	36	78
ATCTAGTCATGTTGGT	ref_1150_RC	16	8	11	22	6	16	13	21	10	18
TTCGGTGGTGTGCGTC	ref_1150_RC	240	119	277	209	89	260	132	213	110	183
GCTGGAGATGTAGTCT	ref_1150_RC	33	30	50	43	17	58	24	52	20	48
TACTCTAGTATGAGAC	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
CTGCGTAGCCGAAAGG	ref_1150_RC	251	116	319	225	86	254	98	227	106	229
GTCCGCTCACCGGGTT	ref_1150_RC	23	16	17	12	9	17	9	13	12	15
CTTTATACTTCGTCGG	ref_1150_RC	52	26	82	59	27	55	22	55	23	60
TGTAACGTGCGCTCTC	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
CTTGTGAAAAGGCCCG	ref_1150_RC	412	162	478	355	145	389	167	350	180	365
GCTTTCGGGGCGACTT	ref_1150_RC	159	61	202	142	94	145	78	160	96	142
TCCGGCCACCGTGGCT	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TGTAATGAACATTTCG	ref_1150_RC	128	77	159	135	70	139	68	136	71	133
CTGTACCCCTTTACAC	ref_1150_RC	11	13	11	12	12	9	8	13	14	11
TCCTTAAATCGCTTTG	ref_1150_RC	18	9	15	17	21	27	19	25	19	19
AATTCGTGCTTTTGTT	ref_1150_RC	337	158	412	336	144	366	167	328	177	331
CTGACTTAACGCTCCG	ref_1150_RC	25	17	27	37	10	35	18	28	14	23
TATGACGTGTCCGGTA	ref_1150_RC	20	12	34	22	10	15	8	22	11	10
CACTGCGAATATTCTC	ref_1150_RC	62	39	111	61	37	50	42	60	52	42
CAGGCTATCCAACTGT	ref_1150_RC	138	62	147	131	71	121	88	144	68	125
TTAACAATCCTATCGA	ref_1150_RC	40	20	35	29	15	37	21	26	16	27
TACCAGGTCATGGCAT	ref_1150_RC	53	27	59	58	18	46	24	65	24	74
TCGACGCATTCCTTAG	ref_1150_RC	418	164	460	399	156	362	160	343	155	349
TCCGACCAACACGGAT	ref_1150_RC	146	101	210	160	121	145	136	140	132	138
TCTCCTGCACTCCTGA	ref_1150_RC	59	32	79	70	38	64	27	61	24	54
TTCACATGCTGCAGCT	ref_1150_RC	14	4	10	8	6	11	2	7	6	14
GCTCACGTCGCAGGGG	ref_1150_RC	21	11	34	27	13	27	12	20	12	23
CGTCTATGGCTTGCCG	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
GGAAGCTCCAACTTCT	ref_1150_RC	113	41	159	132	35	138	39	125	47	119
GATCGGATCCTGAATC	ref_1150_RC	94	32	87	66	20	77	52	79	33	69
TGCATTGAGTTGACCT	ref_1150_RC	156	94	206	177	86	162	104	164	96	143
TGGAAAGGGGCTTTTC	ref_1150_RC	188	68	253	209	88	223	109	238	85	164
CGCGTTGTTACTGCAC	ref_1150_RC	376	234	566	368	227	344	256	370	236	329
AGGGCAGGATCTCGAC	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TTGCATTCGAATAAGA	ref_1150_RC	28	16	36	24	8	37	6	33	19	19
GGGAGCTGCATGACTG	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
GTTATCTGCTGGCTTT	ref_1150_RC	193	94	228	237	66	192	86	218	103	166
ATCAGGCAACCAGCAT	ref_1150_RC	72	37	81	63	46	64	37	67	29	83
ACTGCTTCCGTGATTA	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
GCCCGAGTATTTTCTG	ref_1150_RC	181	84	222	190	83	210	86	171	101	136
TCTTTGTGTTACCCTT	ref_1150_RC	73	30	75	80	50	65	48	58	43	71
TAGGGAGAATGCGTTT	ref_1150_RC	127	53	161	125	65	121	48	115	56	131
CCACTATTGTCCCCCT	ref_1150_RC	28	182	66	62	194	45	184	35	192	31
TAACTCTGTGATGCAC	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TCGATGCTTAGCATCT	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TCTCGTTTTGTTAATG	ref_1150_RC	193	66	221	183	91	175	81	191	96	176
ATCTCCCCGGAGCCCT	ref_1150_RC	60	29	65	48	34	50	36	69	37	55
TTATGGTATCGGGTAG	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
CGGCCCTCAGTTGCTC	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
GTCGGGATATAAATAG	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TCACAGTAGGGGTCGA	ref_1150_RC	102	39	143	118	41	110	47	102	49	116
CGCAGTGGTTTTTCGT	ref_1150_RC	435	184	475	402	199	414	207	433	193	423
CCCCAGTAGCGGGTCT	ref_1150_RC	251	97	282	232	102	248	89	211	117	235
CTTCTCCGACGATTGG	ref_1150_RC	8	7	10	18	5	8	11	7	9	12
GTCGTTTACCGCGTGA	ref_1150_RC	78	29	92	85	35	79	43	62	26	76
ATCTTCACCTACTTTC	ref_1150_RC	486	204	633	523	205	481	205	503	191	453
AGTTTGAACTTTCTGC	ref_1150_RC	79	30	73	63	39	67	22	71	37	66
CCAGGAGGCCACTTTA	ref_1150_RC	349	187	429	366	159	344	165	328	160	343
AAGCTGGCTATTGGTT	ref_1150_RC	219	82	230	210	96	200	118	171	104	187
ATTAACGACTACTAGG	ref_1150_RC	147	68	206	161	61	157	57	154	86	130
AACTTCATCGACGTAA	ref_1150_RC	41	23	51	39	24	40	23	39	21	38
TAGGGCCATAATCAGT	ref_1150_RC	147	63	215	152	68	127	62	119	75	137
AGAACATGCCATAGTC	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTCAGGTTTATG	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
CGTGATAACACCTGCG	ref_1150_RC	29	14	26	24	9	31	16	23	18	35
TTGATATACTACGCCT	ref_1150_RC	0	0	0	0	0	0	0	0	0	0
TCTCACCGTGGGCTTC	ref_1150_RC	38	20	44	42	20	34	35	40	21	33
GTTCGCCGGTCCGATG	ref_1150_RC	112	74	136	93	80	85	106	77	95	113
CCCTTCTTCCGGACAC	ref_1150_RC	840	396	1015	795	411	823	415	763	417	818
TTGGGTTTCGGGTAGA	ref_1150_RC	12	3	9	13	8	11	2	6	1	10
TGTTACGGGGCTTAAC	alt_5947_new	6	9	6	11	13	9	10	5	10	7
CCTTGGCGGGTGGCAC	alt_5947_new	0	0	0	0	0	0	0	0	0	0
GCTCCCCAGACTGTCC	alt_5947_new	0	0	0	0	0	0	0	0	0	0
GACGTTTGGGCATAGA	alt_5947_new	15	20	19	11	22	8	24	12	27	12
CTACGAAACCGACTTC	alt_5947_new	6	4	4	3	10	2	6	1	3	1
TAACGAGATTCCGAAT	alt_5947_new	105	139	123	86	140	101	139	103	143	88
CGATTACGGGGGCCGA	alt_5947_new	22	28	23	28	20	20	12	24	21	13
CTCACTACCGTCGTCT	alt_5947_new	0	0	0	0	0	0	0	0	0	0
GACCTTTAACGCCACG	alt_5947_new	8	17	9	12	14	9	18	12	12	12
GTAGTTAACGCCCCCC	alt_5947_new	0	0	0	0	0	0	0	0	0	0
CCCACATAAGATGATC	alt_5947_new	36	82	63	42	98	36	95	37	97	24
ACCTCCTTGGCGTCTG	alt_5947_new	4	7	11	3	4	6	9	5	9	3
TCCCAGGGATCAAGGG	alt_5947_new	0	0	0	0	0	0	0	0	0	0
ACCAACTTGAGTGTTT	alt_5947_new	74	140	111	81	135	80	133	58	148	51
CTTTTGAGCGTCAGAT	alt_5947_new	17	34	33	22	61	21	37	29	36	23
ATACTCAACCCCATGT	alt_5947_new	9	8	9	3	9	12	9	7	16	7
CTCGTTTTTTTAGCTC	alt_5947_new	0	0	0	0	0	0	0	0	0	0
TCTAATAAAAGGTGCA	alt_5947_new	9	10	8	12	8	5	7	6	19	0
CTGACGCCTTAGGTCA	alt_5947_new	5	3	1	1	1	2	5	1	2	7
GTCAAGAGATGTATTA	alt_5947_new	7	5	3	10	8	9	11	9	19	9
TTTACTGGATCGATTC	alt_5947_new	4	14	11	12	11	13	19	10	19	10
ATGACAAAGTTTGCGG	alt_5947_new	11	16	16	7	18	11	20	6	19	9
AAGACGCCAGTAGCAG	alt_5947_new	1	5	5	3	1	2	7	8	10	4
TCCATTTCTGCGAGTG	alt_5947_new	57	89	71	58	105	63	103	51	101	46
GAATTGTCTACGAAAT	alt_5947_new	8	13	13	14	21	9	21	13	24	14
CGTGACGGTGAGGATC	alt_5947_new	45	38	50	42	57	44	41	30	50	36
ATTCCGTGTGCTTTAG	alt_5947_new	3	4	4	6	8	7	9	4	7	2
TCATCACGCGAGTCTG	alt_5947_new	0	0	0	0	0	0	0	0	0	0
TTAAATAGTTAAGATT	alt_5947_new	52	85	59	50	87	53	92	46	93	55
TAGCGTTGATAGTCGT	alt_5947_new	7	17	7	2	8	5	12	4	9	9
TTATGATCGATTAGTC	alt_5947_new	0	0	0	0	0	0	0	0	0	0
TGATTCGTATTTATGG	alt_5947_new	231	372	312	244	375	257	404	198	399	197
CTCCGGTGTATCCGCT	alt_5947_new	128	193	118	116	170	113	183	137	156	108
CTCTAAGTACTTAGGC	alt_5947_new	27	25	22	11	35	16	42	14	22	18
CCTGGCCTGCTCGAGA	alt_5947_new	0	0	0	0	0	0	0	0	0	0
TTCTGGCCGAGGTTGA	alt_5947_new	0	0	0	0	0	0	0	0	0	0
CAAGCACTCTCATACG	alt_5947_new	23	28	23	21	16	8	28	8	25	10
TATTGTCTCCTGCTAG	alt_5947_new	24	45	23	18	34	21	27	17	47	14
TTGCATTTCGGGCACT	alt_5947_new	0	0	0	0	0	0	0	0	0	0
CTTTTAACGGTATATA	alt_5947_new	14	22	17	8	26	16	25	11	32	17
TCTGGTGCAGTTTTCC	alt_5947_new	165	221	201	185	229	176	260	179	261	162
AAACACCATTTGCGAA	alt_5947_new	42	69	59	52	55	58	72	58	92	41
TATTCAGATTGACAGA	alt_5947_new	26	26	29	18	21	16	20	17	30	21
CCTAAGGCTTTAAAAC	alt_5947_new	35	54	49	41	52	26	62	50	63	27
AATTTCTCTTTTAATC	alt_5947_new	37	22	23	20	44	27	29	25	35	32
ACTGTCCGTGCAGCCT	alt_5947_new	18	30	23	34	32	14	22	22	30	16
GGTTTCGGCGCCGAGC	alt_5947_new	6	5	5	14	5	3	5	10	11	4
TAAATTTACCTTGAGT	alt_5947_new	83	150	122	109	168	112	170	96	167	85
GGTTTCAAAGGGCTAC	alt_5947_new	5	7	7	6	12	6	5	5	5	5
TTTTGGACTCTAGTGG	alt_5947_new	7	12	11	5	22	10	17	13	18	5
TCTCTTTTCAGGGTAT	alt_5947_new	19	27	23	14	18	18	18	17	33	14
TGAGCTCCCCAATAAG	alt_5947_new	0	0	0	0	0	0	0	0	0	0
ATTTTGAGCAGTGGTG	alt_5947_new	112	166	124	106	144	117	171	107	190	107
TAGGTTATGCACTTCA	alt_5947_new	39	83	61	69	79	55	84	34	100	48
TATAACTATTTCGCGC	alt_5947_new	0	0	0	0	0	0	0	0	0	0
GGTCTCCTTATGTATT	alt_5947_new	4	3	10	2	7	9	12	5	8	7
CGCCATCCTTAAACCA	alt_5947_new	0	0	0	0	0	0	0	0	0	0
CAGAACAAGATATAGC	alt_5947_new	23	38	50	36	44	28	62	29	45	42
GACATTCATATCTTTG	alt_5947_new	9	13	15	9	9	7	15	9	15	8
ATGGTTCTAAAGTTCA	alt_5947_new	11	4	4	3	5	8	6	4	3	1
TAGAGCTAGGCTTAGT	alt_5947_new	37	47	25	34	61	37	61	44	76	45
CCAGTAGCCATATAAG	alt_5947_new	53	74	55	57	97	47	82	46	104	51
GTCTTTTACCAGACAC	alt_5947_new	0	0	0	0	0	0	0	0	0	0
ATTGACTTTGATCAAA	alt_5947_new	6	13	14	14	19	13	15	4	9	6
ACCGCTTATTTTCTTT	alt_5947_new	2	11	5	11	14	3	7	9	15	4
TGCCTTTAAGCAAAGC	alt_5947_new	25	29	36	15	30	29	31	21	35	19
GCTAATTCGTATTTTC	alt_5947_new	6	3	13	9	8	12	15	7	13	7
CTCCCATTATGTAGAT	alt_5947_new	0	0	0	0	0	0	0	0	0	0
TCTTTAGAGCGCCGTG	alt_5947_new	18	28	26	19	24	12	25	15	26	23
TACAAGTGTTACTGGT	alt_5947_new	0	0	0	0	0	0	0	0	0	0
CAGTAACGTAGTCACG	alt_5947_new	39	53	67	35	58	33	59	42	65	43
AGTGTTAGACCGTGAA	alt_5947_new	5	3	1	10	7	2	15	4	2	3
CCGTGAATTCTTGTAC	alt_1116_RC	78	67	101	75	80	84	92	55	86	63
GCTTACGGAATTGGTC	alt_1116_RC	30	16	36	34	15	18	27	18	31	25
TCCACGGGTTTGTAAG	alt_1116_RC	59	65	68	53	71	55	69	74	73	54
TTAAACATTAGTCCCT	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
TGGCTCAATCATCCTT	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
TCCATAGAAACATTTT	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
ATTAATCGCGTTATCT	alt_1116_RC	81	55	64	65	59	75	66	58	77	71
ACAATGGCTTAGATTC	alt_1116_RC	144	100	190	155	131	136	142	127	144	129
ATCGCTGATGATGAAA	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
TTCCAGGGAGGCTATG	alt_1116_RC	11	11	13	9	9	21	11	5	8	4
CGCAACTGTTAGCGCA	alt_1116_RC	23	37	44	36	33	30	37	35	30	21
CCCGTACGTAGGGTGA	alt_1116_RC	8	23	9	11	12	5	26	2	29	8
GCGTGTAACCTCGTTT	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
GTCCATCTTGTTGTGT	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGTTTACCAACG	alt_1116_RC	53	52	51	42	58	38	51	59	47	55
CTTACAGATCATTGCA	alt_1116_RC	2	6	3	9	6	2	2	2	4	3
TAGGGACGGTTCCTTT	alt_1116_RC	108	132	129	118	121	107	104	108	105	99
CTGGTCGATAACTGCT	alt_1116_RC	15	19	19	9	12	13	17	15	7	10
CTTGTCCTCGCACGAG	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
TGTTGGGCACTAACTT	alt_1116_RC	7	2	3	1	1	1	2	3	0	0
CGCTATTTATCTTCTA	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
ACAAAGGCTTAGATTC	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
CCGCGTGTTGCGCCTA	alt_1116_RC	16	12	12	11	20	11	25	9	13	10
TTCCATACGCTTCCGA	alt_1116_RC	14	18	14	18	14	10	16	16	13	12
GCTTTAGTGTTTTTAA	alt_1116_RC	59	68	72	68	80	61	75	53	72	47
GGTACCAGATCCCAGT	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
GTTTGCGCTCTATGAA	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
TTTCTCTATCATCTAT	alt_1116_RC	39	43	67	28	39	32	44	43	40	38
TAGCTAGCCGCATCAT	alt_1116_RC	22	22	37	35	23	25	37	20	25	17
TCTCTGTCAATTCTGG	alt_1116_RC	41	56	56	46	56	48	58	42	53	37
GGGTTCCCTATTCACT	alt_1116_RC	34	30	36	28	25	17	40	30	27	22
CTTGTTTCTGACATTT	alt_1116_RC	9	9	4	4	6	4	6	7	7	2
AGTTCAAGTGGGCTCG	alt_1116_RC	112	123	127	128	115	98	121	113	147	98
TCGTCCAATTTGCCGG	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
TCTCGTTGATTCGTTA	alt_1116_RC	0	0	0	0	0	0	0	0	0	0
GATACTGAGTTATTGT	alt_1116_RC	35	51	50	61	50	42	65	52	62	38
TAGAGATCTCTTGTTG	alt_1116_RC	16	38	43	24	33	25	37	21	39	21
CCTTTCAAACGTTCTC	alt_1116_RC	10	27	15	5	28	7	32	17	28	5
AATCCCAGAATTCTTA	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
CCTTTTTGCGCCACAC	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
CAGCCAACATAACGTC	alt_1752_missing	10	35	13	14	36	5	36	13	38	5
TTTTGTTCGCAAATGC	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
GGCATCTATTCGCGGG	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
TCCTGAGGAAGTGCTC	alt_1752_missing	10	22	16	17	30	10	23	15	19	10
GATTATGAATTACGTC	alt_1752_missing	1	11	4	1	12	2	7	4	4	1
GGTATGCTTTGTTAAA	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
CGGAATATTAACATGA	alt_1752_missing	19	25	17	16	25	8	28	12	25	17
CTTATGAGTATGGAAG	alt_1752_missing	5	19	11	3	10	4	13	0	13	7
ACAGGCCTCTTCCGCA	alt_1752_missing	12	35	19	24	29	17	20	17	37	16
CATAGGACGCTTGTCG	alt_1752_missing	2	6	3	0	3	2	12	4	4	1
TCTAAGTCCGCTCTCA	alt_1752_missing	28	29	27	12	39	21	36	19	26	17
TCTTCAACCATGTGAA	alt_1752_missing	3	2	1	1	2	0	1	3	3	2
ACTCTACTTACTGATA	alt_1752_missing	7	31	13	10	39	7	49	7	42	7
TAACAACCGCGTATAT	alt_1752_missing	4	10	10	1	9	6	10	8	10	2
AAACGCGGTACGTAGC	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
TTCGTATGCCGCTATC	alt_1752_missing	1	0	0	0	1	1	0	0	1	0
TATAGTTAATATTCTG	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
TGGCAGTGCGGTGCTC	alt_1752_missing	13	24	11	8	24	14	28	7	23	12
TGTAAGATGCTTGCCT	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
CTGCCACTCTCTGTAT	alt_1752_missing	56	95	46	49	87	53	104	29	105	38
GTTTTATCTTTGATTG	alt_1752_missing	42	80	57	35	79	43	92	30	81	32
TCTCGGATCCTATTTT	alt_1752_missing	18	56	33	32	40	35	74	26	68	17
TATGGGTTCGAAAAGG	alt_1752_missing	11	11	6	7	19	8	17	6	18	5
TAGCAACGCTCTACTG	alt_1752_missing	6	17	10	11	26	17	28	7	23	15
TCTTGCTTTATTTTTC	alt_1752_missing	38	99	43	43	84	46	86	54	92	60
CCTGCTGGTTTGGGAG	alt_1752_missing	3	0	1	5	4	2	4	2	9	0
TTCGGCGTAGGGTTAC	alt_1752_missing	1	6	6	1	3	1	1	1	2	1
GGGCGAGGGGAAGCAT	alt_1752_missing	72	108	68	68	125	81	122	60	115	59
AGGAGCATCCTAACAT	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
CGTTGGGTTCTGGGTG	alt_1752_missing	0	0	0	0	0	0	0	0	0	0
TGCTTTTCTACCAAGG	ref_1246_fdr	46	64	70	45	78	43	75	32	82	33
TATTGATTCCCGACTA	ref_1246_fdr	9	10	10	7	8	3	7	1	12	5
TTCCTCAATCTAGCGG	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
CCTGTATCCAACTTGG	ref_1246_fdr	27	25	19	24	38	21	35	22	34	33
GGTATTAATGAGATTT	ref_1246_fdr	6	13	9	8	15	8	16	10	16	10
CCCAAAGGGTGGTGGT	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
ACACACAGACCCTCGC	ref_1246_fdr	7	23	15	17	27	11	19	12	20	18
TCGTTTTCGTGGATGA	ref_1246_fdr	8	23	28	12	10	21	18	15	27	11
AATCAATCTACTCTAC	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
TGCTACCAACACGGTT	ref_1246_fdr	56	82	80	63	86	50	78	60	70	52
CGCCGGGGGGCGACTG	ref_1246_fdr	89	131	109	81	148	98	134	79	149	91
ATTGTTATCCACGGTC	ref_1246_fdr	5	2	2	3	1	3	2	4	2	2
TTCCCAGATTTACGTG	ref_1246_fdr	134	176	177	156	204	151	202	140	239	141
GACTTAAAGATCATTT	ref_1246_fdr	61	80	69	63	80	58	91	52	88	67
TACACTTAAGCGCTAT	ref_1246_fdr	19	29	33	24	38	20	39	29	40	21
TCTTTCCAAGCCCCTC	ref_1246_fdr	27	28	31	24	30	19	33	21	22	29
TGCGGCAGATCACGGG	ref_1246_fdr	6	11	10	5	13	8	5	3	10	8
CAATTGAACTGTTCTT	ref_1246_fdr	70	150	90	81	136	79	101	67	109	69
CATTATGTACTCAGCG	ref_1246_fdr	29	27	32	23	31	23	24	21	40	13
GACGGTCGTTGTCGAA	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
TTTGCTCGTACTTAGA	ref_1246_fdr	9	18	26	14	18	12	13	10	16	14
GCCAAAATATTCATTC	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
TAACCTTCCTGTTGCG	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTCACGTTTTGCC	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
TGAGACCGTTTTCACG	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCGGTATACGTCC	ref_1246_fdr	66	62	58	53	67	56	58	41	61	42
CCGTTAGCACTCGGCC	ref_1246_fdr	36	54	39	47	50	45	56	47	54	38
CGCAAAGGTACCAAGG	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTTGTTACACGAA	ref_1246_fdr	75	124	98	77	106	62	99	76	138	60
AACATGTGTATCATCG	ref_1246_fdr	254	338	325	277	379	222	359	207	366	253
AAAGGTGTTATATGGA	ref_1246_fdr	145	150	156	147	180	133	176	108	188	110
ATCATGCCGGCACTGA	ref_1246_fdr	20	30	36	22	34	25	33	40	39	22
TAATACGGTACTTCCG	ref_1246_fdr	28	44	41	36	47	23	46	31	48	28
CATCGTTATGCTATTT	ref_1246_fdr	76	87	96	68	93	68	93	72	92	70
TCACCACTGGAAGCAG	ref_1246_fdr	75	86	72	71	84	66	81	65	71	62
TGTGCTCGGCCGCTTG	ref_1246_fdr	64	81	64	59	86	55	100	45	98	49
TTCGCTGCGAATGGTC	ref_1246_fdr	10	7	9	9	7	5	14	8	9	8
GATTAATGAGCTGGTC	ref_1246_fdr	8	13	11	9	12	10	15	10	18	9
AAGAGATAGAGTCCGT	ref_1246_fdr	7	3	4	4	4	5	1	2	9	2
AGGTCAGCTTGGACTC	ref_1246_fdr	10	10	8	8	15	8	13	8	12	4
CCGTTCTCGACGACCG	ref_1246_fdr	18	47	28	29	44	23	43	16	48	25
TGACTTAGCTTATACG	ref_1246_fdr	24	27	25	23	32	28	25	31	44	33
TTCAGGGTGCATATTC	ref_1246_fdr	32	59	45	31	49	43	49	28	64	32
GTTCCCTTGGTGCGCT	ref_1246_fdr	90	101	92	78	109	86	149	67	144	73
TTACTCCGCTCCTGGT	ref_1246_fdr	14	7	17	12	13	8	20	6	13	10
CCAGATCCGGTTGCAA	ref_1246_fdr	13	24	39	26	37	24	35	20	28	15
CCCTAGCCCAAATCTC	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTGTCTTTGTAC	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
GTGATAAAGCTATTTT	ref_1246_fdr	71	97	86	86	100	71	86	63	114	68
TATTTGCCAGGGTCGT	ref_1246_fdr	11	15	11	14	8	10	9	12	29	10
ATCTAATTATTACTGA	ref_1246_fdr	13	24	9	8	21	17	18	15	18	13
CGCCCTACTTTACATC	ref_1246_fdr	5	6	5	5	4	9	4	4	12	3
CATAGATGGCGTTGAC	ref_1246_fdr	5	16	8	10	13	12	18	9	7	6
TATGTTGGCCACAATT	ref_1246_fdr	8	13	4	0	7	4	8	6	8	6
ATCAAATCGGTGGGGG	ref_1246_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTTTTGCTCTAGA	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
CCTTTTAGTAAGTTAT	ref_1786_upstream	43	43	38	43	51	33	39	36	40	23
ATGTATTTGTCTGAAT	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
ATTTCAATCCATCTGA	ref_1786_upstream	31	23	34	30	25	32	38	17	34	26
AGGGAAACCGTCGACA	ref_1786_upstream	1	4	4	4	4	0	3	0	4	0
GGAATGTTTGCGACCC	ref_1786_upstream	33	51	45	32	46	25	42	21	49	36
CTCTGGCACAGCTATG	ref_1786_upstream	3	7	19	7	4	2	7	6	12	9
GACGACCCTCTAGAAG	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
CTATCCCCCTCCGGAT	ref_1786_upstream	71	73	78	74	78	65	74	61	90	54
AACCTAAGTCAGCCGC	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
GGCGTACCTATTATTA	ref_1786_upstream	17	15	19	8	14	13	12	15	11	12
CCCTTCTCGATACCGT	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
ATACGATGTCTATGGG	ref_1786_upstream	22	26	20	29	21	11	30	20	25	30
TTCGGGTATATTTTTA	ref_1786_upstream	30	37	50	51	34	42	35	26	54	29
CAAGAAAGTGCCTTTG	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
GTGGAAGCTGATATGC	ref_1786_upstream	75	82	102	85	91	75	81	79	101	99
AGGTATGCCCTTCATA	ref_1786_upstream	55	78	45	76	67	72	73	50	83	48
GTAGTGGAGTAATTGC	ref_1786_upstream	15	9	18	16	34	15	16	14	8	12
CGCACAGGGGACATCC	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
AACCACTCAGGCATGA	ref_1786_upstream	58	61	52	48	67	66	60	52	63	50
GTTGGTTGAGTAGTCT	ref_1786_upstream	22	25	26	18	14	7	19	18	23	18
GTAACGATTGTTCGAC	ref_1786_upstream	53	64	66	35	71	56	43	33	64	42
ACTGGCTATCCAGGTG	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTTACGTTACGGA	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
AGTAGGACCTGAATAA	ref_1786_upstream	0	0	0	0	0	0	0	0	0	0
TCTACTGTTGCCTAAT	ref_1786_upstream	58	87	69	60	108	60	113	46	100	52
TTTAAATCACTGGCCC	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
TTTATACTCAGTTCGT	ref_2009_RC	186	181	218	209	153	192	146	189	170	164
CGTATATTTGGCCTCA	ref_2009_RC	45	38	43	42	42	41	30	45	38	31
CTTCTAAATTTAGGCT	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
AGGGCCTAATCGTGCT	ref_2009_RC	23	27	19	22	34	19	27	22	28	14
GCTTGTCCTTGCCTAA	ref_2009_RC	25	27	48	35	30	44	35	45	37	30
TAGCGACGTGAATAAG	ref_2009_RC	200	202	249	214	191	207	192	214	182	184
GCCTGATATGAGCCAG	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
GATCCAGAGACACGAT	ref_2009_RC	69	50	71	67	37	65	45	53	45	60
CCTTGTTATTATATTC	ref_2009_RC	21	14	29	14	12	16	14	15	25	23
CCTATCGCACGGCTAC	ref_2009_RC	92	65	100	82	101	83	97	89	95	79
ATCTGGACATGTCTAA	ref_2009_RC	19	13	23	11	8	21	12	22	17	16
GGCTAGAGGGATGGGT	ref_2009_RC	37	39	40	32	27	49	25	33	29	36
TCAGAATGAGCTTGAT	ref_2009_RC	18	15	18	16	12	15	12	11	13	17
TTTTTTGGGGGTCAAA	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
AGTTCCCGGTACTGGA	ref_2009_RC	4	1	3	2	3	3	6	1	9	6
TGGTACCTAGCGTTCC	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
TATTGAAAGAGATAGA	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
AGCCTCCTTGCCTGGG	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
TGATCATTAAGCACGC	ref_2009_RC	68	29	62	60	51	63	55	56	50	47
GTTAAAGTCAACGTGA	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
AGGTGTAGGGGTTGGG	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
AAAGTATATATAGCAG	alt_2009_RC	23	21	42	32	20	19	18	23	26	32
TTTTGACTGGCGGAAG	ref_2009_RC	73	62	94	84	62	68	71	69	71	72
CCCCCATTTAACGATC	ref_2009_RC	16	11	22	13	6	15	8	19	10	13
AGTAGTTAAGGCTCTA	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
GTCATTAGGCAGCTTG	ref_2009_RC	127	120	151	109	103	113	104	116	102	126
GCGGTTCGAAATCCGT	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
TAATTGTAGTCTCCTG	ref_2009_RC	119	85	139	124	123	101	106	112	120	107
GTTCTACCAATCATTG	ref_2009_RC	34	22	34	28	37	23	25	33	24	24
AGGTTATAATGTGTGC	ref_2009_RC	215	180	251	203	150	220	163	187	164	167
ACTTTAATAGCTGTTG	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
CTACTCTATATCGTCA	ref_2009_RC	52	51	44	55	54	34	55	49	71	40
TCTTTGCGCACAACTA	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
GGGTTCAAAGTCTGCA	ref_2009_RC	213	143	271	228	183	220	173	189	174	184
CCATTCTCGCTTCTGC	ref_2009_RC	12	18	21	12	16	10	12	17	13	9
TCGCACGGTTCTAAAA	alt_2009_RC	30	19	46	27	28	28	35	22	22	20
CGGTAGTTGTACAGTA	ref_2009_RC	23	15	33	29	15	22	18	15	23	24
TGTGGAAGCGGCTTGA	ref_2009_RC	50	34	59	47	23	41	32	33	38	47
GCTGGTATCCGCTAGG	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
GAATATATAGGCTCCA	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
AGGGATTTTTTCCTGG	ref_2009_RC	46	41	51	56	35	49	29	38	34	40
CATCGCGTAGAATGGA	ref_2009_RC	53	21	43	44	37	32	23	36	25	34
AAATATCAATAAAACC	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
AACAACCTTTGTTTAC	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
ATTTGGATACATGAGT	ref_2009_RC	7	5	5	8	5	6	6	3	6	7
TTACCGAGGATAAATT	alt_2009_RC	15	6	13	14	7	8	12	8	4	9
CTCAGATAAATGTCAG	ref_2009_RC	0	0	0	0	0	0	0	0	0	0
TGCGAGTCTTGCACTA	ref_2009_RC	56	58	67	71	50	58	50	63	54	36
GTTTTCGTTACTGATA	ref_2009_RC	10	9	8	6	6	7	6	6	8	17
ATATAACACCAGAAGG	ref_2009_RC	21	16	34	19	23	25	19	25	17	18
CATTATTAACAGCAGC	ref_2009_RC	13	9	17	18	19	18	21	22	24	15
TACTTCCACGGATATA	ref_4911_missing	59	142	61	75	128	77	130	62	158	45
ACACATTCCTACTTAA	ref_4911_missing	0	2	2	0	6	0	1	3	0	0
GCCCAAGCATGGCTCG	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
ACTACCGGGAAGTAGG	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
AGAATATTGGTAACGC	ref_4911_missing	32	50	38	16	50	43	57	35	69	21
TTTTAAACACACTTGT	ref_4911_missing	1	3	1	5	6	4	5	1	3	2
GCAATCTACTGTGTAA	ref_4911_missing	2	4	5	2	6	4	10	6	7	4
ACGTAGCGACGCACGG	ref_4911_missing	6	15	8	11	9	10	12	5	22	6
GTTTAGATCAAGGTTT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GAACCAAGTACCTTTA	ref_4911_missing	10	7	6	5	7	3	7	11	10	6
TACTAAGTCCCGGTTG	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
CGATTTAATGCGGTGG	ref_4911_missing	7	14	5	11	16	5	7	9	13	9
GACAGCCCTACACGGA	ref_4911_missing	5	11	5	2	9	8	7	4	8	3
GGTCACACCGAACCGT	ref_4911_missing	1	0	0	0	0	0	0	0	3	1
AATCGGCAACTTTAAC	ref_4911_missing	6	4	6	9	15	4	2	6	13	3
GTGCGAGGTATTTTAT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TTCGGATCTTAATTCC	ref_4911_missing	8	10	9	13	21	13	12	3	9	13
AGGTGTGGGTTTAAAA	ref_4911_missing	0	3	6	4	4	2	3	5	4	1
GGTGCTTATCGAACTT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
AGTTATTAAGCGGTGG	ref_4911_missing	6	16	2	7	23	3	23	7	18	4
TTGGGCTGACGACACC	ref_4911_missing	10	18	17	5	6	8	22	9	12	5
CTTGAGGCTGCCTCGT	ref_4911_missing	9	28	14	17	24	15	23	14	29	7
TTAAATGTGATGTTTA	ref_4911_missing	2	12	9	3	9	4	10	3	10	2
TCAGTTCGCTTAGCCA	ref_4911_missing	4	13	6	8	14	11	19	8	15	5
TCCCGAGAGAGGATTG	ref_4911_missing	1	2	1	0	3	0	1	0	0	0
GTTGTTATTTTGTTAC	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TACTGACCACGGGGCA	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TGGGACTCAATGCACT	ref_4911_missing	11	25	22	19	23	19	35	17	34	8
GCCTTATTGCGAGTCT	ref_4911_missing	13	24	16	9	23	7	25	4	22	6
CTTTTGTAGTTCGTCA	ref_4911_missing	4	11	3	3	3	3	5	7	7	2
GGTATTGTGAGATTTT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
CGCATTGTCTGGTCTT	ref_4911_missing	33	82	44	38	69	30	110	45	74	46
CATGAGATTTCCCATT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TATGCGATTGAGAGTT	ref_4911_missing	1	8	6	3	12	3	13	4	11	1
CGCTCGCTTGATTCCT	ref_4911_missing	13	25	10	11	28	11	21	5	27	8
TTGATTAGGCTGATCT	ref_4911_missing	27	53	44	28	65	34	51	25	65	30
TATTTTTGAGTCTTAG	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
AGAAGGGTTCAGACCT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TCTCATTGTATACAGG	ref_4911_missing	5	19	6	5	10	3	13	8	17	4
ATTAGTACGCTTATGT	ref_4911_missing	18	24	10	13	23	9	31	6	23	9
CAATTGATCACATTTT	ref_4911_missing	0	5	4	6	5	2	4	3	3	5
TCGATTTTTGTAACCA	ref_4911_missing	1	2	2	4	3	1	7	3	6	3
ATGGTCTACTAGCCTC	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TGCCTAATGTTGTCCC	ref_4911_missing	5	24	14	19	29	13	41	9	25	9
TGTGCGCGTGGCCGTA	ref_4911_missing	3	3	7	5	6	4	13	5	7	4
GGAGTGTCTCTCAGAG	ref_4911_missing	1	10	2	2	8	3	6	1	9	6
CATCGCTTGGTACGAT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GTGAGTCGTTCTTGTT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GTGGTTGCTTTTATTC	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
CTTACCGCTTGTGATG	ref_4911_missing	2	11	1	0	2	5	7	4	8	0
TTCAGCCCTAGGGATC	ref_4911_missing	0	3	3	1	1	1	5	2	6	0
TGGTATGTGTATAGGG	ref_4911_missing	1	3	0	2	2	2	3	0	3	0
GTTTCTGCATTTGTTG	ref_4911_missing	10	35	14	10	38	8	44	11	27	11
AGTCCATTTTCCCTCA	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TTCAAGTCAGGGACCC	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TGATCTCATTTTCTTG	ref_4911_missing	22	31	25	12	37	18	24	20	36	22
GTCGTTAATCGTGTAT	ref_4911_missing	45	67	40	39	77	44	104	31	82	37
CTGCGTCAGCGATCTC	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GTTATTGACCTTTTAT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GGTTGTAATGTACAAC	ref_4911_missing	5	25	15	2	16	5	14	10	16	13
TTGCCTGATAATCGTA	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
CCAGTTTCTTGTGCTC	ref_4911_missing	2	13	6	6	15	7	13	5	9	3
CTTCTGCGGACTCAAC	ref_4911_missing	2	7	5	2	6	4	8	3	10	4
TTTATGTCATCCAGTG	ref_4911_missing	17	12	7	5	22	5	14	12	23	3
TTATTTGGGCATCCTT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
AGAAACTTCTATTTAA	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TTTCGGTGACTCGGGG	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
CAAAAGTTTATTAGAA	ref_4911_missing	9	8	8	4	19	4	15	5	16	8
CCCCTATAGGTCCTTT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GCACATCACGAAGCGA	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TTTCGTTGAACGGTTG	ref_4911_missing	3	7	4	6	4	5	9	5	7	3
AAACGCCTAAGCGGGC	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
ATTTAAGTTTCGGCTT	ref_4911_missing	26	59	46	22	49	21	61	21	54	28
TTTATTCGACAGTCCT	ref_4911_missing	6	10	5	9	7	2	15	4	18	5
TTTTATTCTTTGATGC	ref_4911_missing	14	25	13	18	35	8	20	14	33	14
CCTTGCAAGGGCCAAC	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GCGTACATTCGTCGTT	ref_4911_missing	6	10	11	4	10	7	10	9	8	5
AAAATCCGGAAGTTCT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TACACTCTTTTACTTA	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
TGTGTCGTTCCGTTAC	ref_4911_missing	8	15	8	7	17	3	13	12	26	6
TCATAAGGTGCTCGGG	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GGCTTCTAGCGTTTAT	ref_4911_missing	0	0	0	0	0	0	0	0	0	0
GTCGACGATTACTAAT	ref_4911_missing	1	4	1	3	4	1	3	4	0	1
TGGTGTAGTTTAGGCC	ref_4911_missing	14	23	11	16	31	11	16	19	24	10
AATCGCACCAACGGTA	ref_5316_upstream	27	34	29	35	41	21	26	27	39	14
GGATGAATTAAGCGAA	ref_5316_upstream	32	31	29	17	33	21	29	15	51	35
CGATGCCCTGCCAAAC	ref_5316_upstream	21	26	34	15	36	28	42	23	29	26
CTACATACTCATTTGT	ref_5316_upstream	27	45	51	42	56	41	70	36	75	30
ATACTTTTATGCCCGA	ref_5316_upstream	51	99	89	69	110	66	105	56	113	74
CCTCTCCCTTTCAACC	ref_5316_upstream	2	6	0	2	0	0	3	0	3	1
GCTCGTCCCATGCCAT	ref_5316_upstream	128	138	137	113	147	90	168	104	170	95
TTAATTGCAATTAGGG	ref_5316_upstream	15	24	11	13	19	16	24	18	46	14
ATATCGTATCGCCCGT	ref_5316_upstream	11	13	17	16	12	15	25	16	20	20
CCGAGTGGGCAACAGT	ref_5316_upstream	66	131	68	82	99	71	98	67	95	60
TCAAGCTTTAGTCTCG	ref_5316_upstream	31	78	66	40	91	50	96	37	70	32
TAGTTTTTTACCGTAA	ref_5316_upstream	16	30	23	22	25	18	31	21	31	11
CTCTTGATTTTTTACA	ref_5316_upstream	26	26	20	18	32	12	26	16	15	17
TTTTGTACGTGTTGTA	ref_5316_upstream	18	19	14	6	10	10	25	15	25	9
GAGATTTTAGTGCCTG	ref_5316_upstream	37	55	43	27	60	34	63	32	70	44
ATTCCGCACGGTCGAG	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTGGGGACTCCCTAAC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
GTTGTAGTAAGCGGTA	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
TTGAAAGTTAGATGGT	ref_5316_upstream	112	133	149	100	176	90	149	110	154	95
TTTGGCCGACGTACTG	ref_5316_upstream	35	64	56	43	51	51	55	39	73	38
GGCGGGTCCTCTCCCA	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTGCGTCTCATC	ref_5316_upstream	11	19	15	6	21	16	16	3	22	10
ACACCACAATCTTGTA	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTACGATACCCCTTGC	ref_5316_upstream	1	7	0	0	7	2	6	2	11	0
ATGCATCGCGGGAACG	ref_5316_upstream	25	45	42	27	44	25	54	22	54	33
CTCCAAATCTTTGATG	ref_5316_upstream	7	10	4	3	12	3	8	3	12	4
CATATCGGGCCTTGCA	ref_5316_upstream	9	6	12	6	12	8	16	11	17	8
GCTTCGTCGATTCCCG	ref_5316_upstream	13	19	28	14	31	19	27	10	23	9
CACCTCAGTCGCTTGG	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTAAGCCACTCAGTCG	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
ACGACCGCAGACTCAC	ref_5316_upstream	27	35	49	38	41	27	46	30	43	27
AGTATACCCCATGGCT	ref_5316_upstream	30	33	34	36	43	30	33	23	31	17
TGCTCAGCAAAGTACA	ref_5316_upstream	46	81	51	39	72	44	50	48	80	47
AAATAAGTCGTTGTTC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGGTTTTACTCTA	ref_5316_upstream	8	15	10	14	33	9	10	8	14	10
CTAGCTACGAGTTCCG	ref_5316_upstream	31	50	39	35	47	22	57	31	64	33
GCTTCTAACACCTACA	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATCGTTTAGCAA	ref_5316_upstream	22	25	26	24	38	17	32	22	32	19
GAATATCCGGATTTCG	ref_5316_upstream	22	26	20	16	9	20	27	19	26	26
GCTATTTTCGCTAGTT	ref_5316_upstream	44	59	40	37	48	43	67	38	61	33
GAGCCATGGCTATCCG	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
CAATGGAAGGAAAAGA	ref_5316_upstream	91	102	93	62	99	71	113	93	96	68
AACCTGGACAAGACCT	ref_5316_upstream	69	108	92	79	140	70	114	68	134	71
AAGCTATTTACTAAAG	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCGGCGTGGGTT	ref_5316_upstream	33	37	35	32	39	21	43	29	57	27
GATCCAATGCACCTGC	ref_5316_upstream	11	22	12	8	19	15	23	14	20	10
TTCATTTTTCTATTGA	ref_5476_missing	8	27	14	28	14	12	20	25	22	19
CGCGCATAGTTTTGCA	ref_5316_upstream	7	16	13	8	10	12	10	3	18	11
GGGGCCTATGGACCAT	ref_5316_upstream	4	1	2	1	4	1	4	1	3	1
TATCTCTAACGCATAT	ref_5316_upstream	34	32	45	39	52	43	47	23	60	26
ACTTTACTTCGCTGCT	ref_5316_upstream	12	5	6	3	12	6	8	5	4	3
CGCAATGGTAATCATG	ref_5316_upstream	0	4	1	1	4	1	11	2	12	3
ACTCAGCCCCGGTGCC	ref_5316_upstream	82	148	91	86	183	80	173	90	197	62
ACGGTCGTGGTCCCTG	ref_5316_upstream	18	20	20	15	24	9	34	14	24	16
TTGCCGGTTTTCACCT	ref_5316_upstream	26	22	19	11	26	19	45	17	36	12
TGGACATTTCTCTTTT	ref_5316_upstream	123	145	196	143	184	135	171	149	152	130
TGGATATGCGCTTAAT	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
CTGCCAAGGCCTACGG	ref_5316_upstream	34	44	33	30	49	22	42	14	45	47
GTATGCATGCTAACTG	ref_5316_upstream	40	68	57	61	50	47	52	48	63	42
TTGCATTCCAAGGGCT	ref_5316_upstream	6	6	7	4	3	4	9	3	5	9
CCGTCAGTTTCGGTTC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
GACTTAGACTACGACC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
AACCCTGTTCCGTTCC	ref_5316_upstream	40	62	65	45	73	51	57	52	63	43
AGATCCAAAAGGCGTC	ref_5316_upstream	5	12	3	6	14	9	13	11	20	8
CTCGTTCATAATCCGT	ref_5316_upstream	6	6	9	4	11	4	9	10	7	5
CTTGATTTCACAGTTG	ref_5316_upstream	12	7	12	5	20	9	15	8	6	9
TGTTCGCAACGCGCCG	ref_5316_upstream	2	4	6	3	4	2	9	4	7	3
ACTGTGGCTATGTTGC	ref_5316_upstream	10	11	7	9	16	11	10	7	11	8
GGTAGTTTAGTGGTGA	ref_5316_upstream	9	22	9	14	15	11	20	12	21	13
GGTGAGGTGCGTACAA	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
ATCCTACTTTGGTCGG	ref_5316_upstream	23	20	21	18	30	17	23	22	36	15
TTATGACCAGGACGGG	ref_5316_upstream	36	55	43	33	34	27	51	33	60	32
TCTTCTCGATGGTAAG	ref_5316_upstream	82	133	101	101	161	97	119	102	140	80
GCTATGGACTTGCGGA	ref_5316_upstream	33	36	41	39	47	45	56	39	62	27
GTATATAATAAACAGC	ref_5316_upstream	31	42	46	34	41	31	53	20	64	24
TCATTCTTGCCCGCCG	ref_5316_upstream	6	6	6	5	13	7	7	3	7	5
CTTTGTTGGGCCGTAA	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
CACGCCGTGGCTCCTC	ref_5316_upstream	48	62	59	42	69	53	73	40	59	53
TTCCCCAGGATCCAAG	ref_5316_upstream	2	18	8	8	17	4	19	3	21	8
ACCCGGTTCCTTTCTA	ref_5316_upstream	17	19	13	10	27	17	29	12	28	16
ACCGCATCTCTAGAAC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
CATCGACCCGTGGTGC	ref_5316_upstream	0	1	0	3	1	4	4	3	2	1
ACTTCCGTTGACAAGC	ref_5316_upstream	8	6	9	13	11	3	9	2	16	1
GGTTTATCTCCGGTAC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
GTCTCAACGTGTGTCT	ref_5316_upstream	7	5	7	5	8	2	5	3	6	5
TTTTGGATCTCAGTTA	ref_5316_upstream	37	42	38	25	43	20	38	27	42	33
ATATGTATGGAACTGC	ref_5316_upstream	18	21	22	26	28	19	27	23	30	13
CCAGCCGCCGGTTCCC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
AGTGCGCATACTCTCC	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
AGAAAATTGGATCTGG	ref_5316_upstream	0	3	3	4	4	6	3	2	4	1
CATTCCACTCGCGAGT	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
TATAAAGCGTTTGTCG	ref_5316_upstream	13	27	17	20	15	16	26	12	23	11
GCTTTCGAGCTAGGGA	ref_5316_upstream	30	48	38	23	51	37	44	24	64	22
TGGTAGCATCCAACAG	ref_5316_upstream	60	113	82	69	63	58	113	53	123	64
CACGGATCGCAATTTT	ref_5316_upstream	0	0	0	0	0	0	0	0	0	0
TCTGCCCGTCCGGGTG	ref_5316_upstream	25	37	35	31	50	34	47	28	69	23
TGTCACTACGCCCGTA	ref_5316_upstream	14	26	24	13	29	18	29	16	41	17
AAACCCATACCTTAAA	alt_4177_missing	25	32	15	18	27	18	35	13	25	6
TCGGCCATCTGGGGAT	alt_4177_missing	25	120	41	54	116	24	128	48	104	32
GAACATCTCTAATGCA	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
AACATGTCGCCCCTTA	alt_4177_missing	12	19	24	15	22	23	25	13	19	12
CTGACTCCACCCCTGT	alt_4177_missing	10	46	20	14	50	9	37	14	46	12
TGGGTTCTTTTTCATC	alt_4177_missing	0	12	7	11	16	9	10	10	14	4
AAAGTCATTTTAATGC	alt_4177_missing	8	22	14	5	25	6	24	5	13	10
TGCTGACGCTAGTTGG	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
CGTTGCTTCTCACCAG	alt_4177_missing	9	8	1	6	12	2	8	12	13	6
GATATATTTAGCCTAT	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
GATCGTGGACGGATCA	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TCAAGGGGAGTTTGTT	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TTCATTCCATGTGTAT	alt_4177_missing	4	13	6	9	21	5	14	7	17	9
AATTCTGCGATTGACT	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCTTTCCTAAGC	alt_4177_missing	4	7	5	8	14	4	5	7	11	8
TCACTACACCAACTAG	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
CAGTGGTCCTCTCGAG	alt_4177_missing	15	25	16	10	28	16	24	12	33	19
AATCTGGGCTAAGCCA	alt_4177_missing	2	12	4	5	19	5	18	4	11	6
CGCACGGAAGTACTTA	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
GTTTCAAAGTTTTGAA	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
CCCCTCCTTTCCTGGC	alt_4177_missing	0	7	3	6	4	2	10	5	5	4
CGCGCCCTGATTATTC	alt_4177_missing	4	6	4	4	5	0	9	4	12	1
CGTGGTCCACACTTTG	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
CGGTTCTGCGAAATAA	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
CGATTGCTCAATTCTC	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
CCACGTCTCATGGTTT	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TGGTCCCTTGTTTTCG	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TTGTTATTTAACGGAA	alt_4177_missing	19	44	41	20	45	20	36	16	66	23
TGCCCCGTTCCATGGC	alt_4177_missing	3	25	4	3	22	4	23	4	27	3
GAGGTAATTTCGAGTA	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TTAACTTAGAATGCTC	alt_4177_missing	0	1	0	0	1	0	0	1	1	0
TTATACATCATTTGCG	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TCTCATACACGGTTTA	alt_4177_missing	3	9	6	5	6	9	7	1	10	8
ACGGATCTGTACGGCT	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
GTTCGTAGTGGTGTTC	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
CCAATGCCTATTGGTA	alt_4177_missing	37	98	47	39	105	36	105	37	90	30
GTATAGTCTTTCCAGT	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
AGAGCGTTTTCCTCGA	alt_4177_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTGTTGTCCTGG	ref_4264_reverse	10	18	16	8	20	5	18	9	20	15
TTATCTTCGGCTACTT	ref_4264_reverse	59	84	91	83	104	55	91	54	122	61
ACAGTTCCTGTAGGAG	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
CATCTGTAGGTACGGA	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
GAACGACAACCATAGT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGCCGGCGAACCG	ref_4264_reverse	1	3	5	3	6	2	4	3	2	1
TGCAATGGCTTATTCA	ref_4264_reverse	18	13	28	12	24	20	21	11	17	11
TCATGCGGCTGGGTCG	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
CCAACAAGATCGGTAT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
ACGGGACTTCTCACAA	ref_4264_reverse	62	96	87	65	106	75	96	49	84	62
GCAGGCAAAGTCTGGG	ref_4264_reverse	28	61	51	31	57	37	61	46	65	35
TGGCGAGACTGAACGG	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
CTCTGATTGTACCCGT	ref_4264_reverse	12	21	15	7	30	16	22	12	16	18
TTAAGGGGCCGCCAAC	ref_4264_reverse	20	17	27	8	23	9	27	14	21	15
GCTCGTGATCGACCCA	ref_4264_reverse	22	46	31	34	60	14	58	29	48	22
AGGTGTATAGAAGTCG	ref_4264_reverse	7	19	7	7	15	8	36	6	21	14
ATTTGAGATTGGGTTT	ref_4264_reverse	28	32	28	21	36	24	41	19	39	13
CCGCGTCATCTCTAGC	ref_4264_reverse	18	54	22	10	22	20	53	16	33	13
AAGGTCGCGCCCTCCT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
GTCAGAAAGCCGTGTA	ref_4264_reverse	4	8	5	5	6	2	10	1	7	3
CATGCGGCCCTCCTGA	ref_4264_reverse	9	24	15	16	31	17	20	11	24	14
TAAAATCATTCACTCA	ref_4264_reverse	20	33	34	22	23	18	33	22	49	29
CTCATGAGCAGACTCT	ref_4264_reverse	15	18	20	11	26	10	14	16	19	12
CTGCTGTAAGTATTTT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
AGAGGTCTCTATGTTG	ref_4264_reverse	25	39	24	29	37	18	39	20	45	22
GCACCTGCCCATTAGT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
CATGTAGCGCTGCAAT	ref_4264_reverse	71	114	95	79	112	54	87	83	136	56
GACGTTACAGGTTTTC	ref_4264_reverse	16	40	12	15	23	15	29	15	18	14
GGCGGACGGAATTGTA	ref_4264_reverse	81	106	114	91	115	91	122	71	119	64
TACGGGGTGCTTCCAC	ref_4264_reverse	95	168	96	82	135	91	157	71	129	71
AGTTAGGTTATTGATT	ref_4264_reverse	2	4	1	0	5	1	6	0	2	0
GTCCGGGAACGTTTTT	ref_4264_reverse	56	65	49	46	85	45	64	47	82	49
CACCTACCATCAAATG	ref_4264_reverse	33	60	30	33	76	17	53	14	54	24
ATAGTAGACAACATGG	ref_4264_reverse	12	33	20	19	31	21	32	13	20	12
GCCTATTGACTATGGT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
TATTCACAACGTCGCC	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
CAAAGCCTAGGTAGGT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
GGCCCCTTCCCAGTGC	ref_4264_reverse	18	28	27	33	37	21	31	25	29	22
GCTTAAGTTTCCACCC	ref_4264_reverse	14	16	19	7	22	16	26	12	20	12
TAAAGAGTCGTTCGTA	ref_4264_reverse	4	3	2	3	0	4	2	3	2	4
GTCTATGTACATACTT	ref_4264_reverse	3	26	25	12	40	12	10	16	25	10
TCTCGAAATTTGGTGG	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGCAGTCCTGTCA	ref_4264_reverse	6	15	13	12	26	8	28	9	26	11
GGGACAATTCTTTCTT	ref_4264_reverse	19	27	22	18	18	12	36	12	29	9
CCCCGTACCAATACCT	ref_4264_reverse	28	47	24	23	71	12	47	13	53	16
CCACGTTTCTTCTAGT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
ATCGACTCGAATCGAG	ref_4264_reverse	100	178	134	136	183	99	205	111	209	109
TCCAACACAGGGGGGT	ref_4264_reverse	6	16	8	6	13	7	16	7	14	6
GGACCGCTGCAATGGA	ref_4264_reverse	9	11	11	7	16	16	16	5	12	9
ACTATAGAACGGAGGT	ref_4264_reverse	13	24	13	17	21	23	25	10	36	12
CATAGCCTGTGCTGAT	ref_4264_reverse	3	18	8	8	18	13	20	8	17	5
CTTTGCAGCAATATTA	ref_4264_reverse	37	58	56	44	51	32	39	19	36	34
AGGGCCGCCATTTCCC	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTGCTCATTGTGC	ref_4264_reverse	21	20	22	15	20	8	29	16	21	9
GCGTACGGAACATTTC	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTAAGCGCTCATA	ref_4264_reverse	18	19	22	18	28	10	25	11	27	10
ATTAGGGTGCCATCCC	ref_4264_reverse	15	19	16	18	12	5	15	10	17	5
TCTATCGCACGTCGAC	ref_4264_reverse	12	21	18	13	28	11	27	18	32	4
TCCGACGACCCTGTAA	ref_4264_reverse	19	16	10	20	35	8	42	11	32	15
CCCTGATAGCCTCCTT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
GTCTACGCCTGGGACC	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
TGGGACATGGTAAGCT	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
GCGTTCGGAACATTTC	ref_4264_reverse	92	158	125	96	118	107	167	89	179	87
AACTTGCTATATCCCC	ref_4264_reverse	0	0	0	0	0	0	0	0	0	0
CATAGCGCATAAGTTA	ref_4264_reverse	34	37	25	20	38	21	32	18	30	16
ATCCTTTTAATTTTTG	alt_5240_reverse	128	79	130	106	111	122	89	114	84	103
TGTATAAGACAAATGT	alt_5240_reverse	18	15	22	29	15	12	20	8	18	24
TCCGCAGTGGTTACTG	alt_5240_reverse	140	107	149	132	105	122	97	111	121	105
TATAGGGCTCTAGTCC	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
GTATAGCCGGTGTGCG	alt_5240_reverse	7	6	2	2	4	14	4	4	3	2
CCTAAGGTAACCAATC	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
ATCATGTGGTATTGGT	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
CCTGCCGGCCCGGAAC	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
CCTAATGTCAGATCCC	alt_5240_reverse	58	129	57	74	108	51	139	64	149	66
GGCGTTTCTATAGGGT	alt_5240_reverse	23	17	22	36	25	14	29	20	25	15
TACTTTTGGTCTAACA	alt_5240_reverse	74	78	90	87	66	68	81	68	74	61
CTTCGTGGGGCAGACT	alt_5240_reverse	24	23	25	24	21	18	19	22	22	20
TTATTCTGATGGGTAT	alt_5240_reverse	3	7	15	4	5	5	2	3	4	5
CAGTTACACTTCTGTG	alt_5240_reverse	39	43	49	39	38	24	49	31	38	33
GTTTGATCTAGTACGT	alt_5240_reverse	76	86	86	93	58	69	97	69	90	77
TAACCCTTACTTCTTC	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
TAGATCTTTGGGAATT	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
CACTCCGAATACACTT	alt_5240_reverse	23	44	22	16	43	25	31	19	55	15
GATATTTTCCCGGCAC	alt_5240_reverse	16	6	10	6	0	7	4	2	4	5
CGCAGGTATCGTCTAT	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
ACTGTTACATGGATCT	alt_5240_reverse	11	7	13	13	11	10	8	8	11	15
TTGACAGTATTGCTGT	alt_5240_reverse	70	67	76	79	98	72	84	59	84	70
ATCGCCGCTCTTCAGT	alt_5240_reverse	8	11	16	12	13	5	11	12	12	6
CAGCGTCCGTGTTGGA	alt_5240_reverse	3	4	4	5	6	4	4	4	4	1
CTCCCAGGTGATAGGG	alt_5240_reverse	12	5	12	16	10	5	9	10	16	11
TGGTAGGTCCTTTTCA	alt_5240_reverse	60	78	88	67	67	53	71	49	93	50
TGGGGTCCGTGGGGCG	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
AGCATCCATTTACTTT	alt_5240_reverse	47	32	30	32	34	40	30	54	35	31
AGGAACCACCTGCCTC	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
GCGTGCACAGAGCCTC	alt_5240_reverse	91	105	108	91	89	69	102	90	82	74
GAACGGCACTGGGTGT	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
CAACGGTTGTACTTAT	alt_5240_reverse	27	18	19	36	16	21	22	24	21	15
AGTGCTTAACTTGTAA	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
GCCATGAGGCCTGGTT	alt_5240_reverse	46	51	59	55	48	66	52	53	54	52
AGCATGGAATGGTTCG	alt_5240_reverse	10	8	9	9	7	7	8	9	13	4
ATTCGCTTATCGGGTT	alt_5240_reverse	4	4	13	4	1	9	2	2	3	5
GTTTACGTTTCCCCGC	alt_5240_reverse	3	8	6	3	2	1	3	3	2	1
ATACACGGCATGAATG	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTGTCCTACAATG	alt_5240_reverse	49	43	73	46	41	51	46	68	49	52
GGTCCACCAGAGTCCG	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
GGTCGGTTTCATGACG	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
TTGTCATGATTTAGGT	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
CCTCGTGACGCATTCT	alt_5240_reverse	9	11	9	9	13	10	19	7	4	10
TCGCCCTGGTGGTGTC	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
TTTAACTAGAGTTGCT	alt_5240_reverse	3	7	4	4	3	2	8	1	1	4
TCGTAGGTGCATATCG	alt_5240_reverse	49	40	48	45	40	49	36	43	57	33
TCTAGAGGCGCGCCCT	alt_5240_reverse	0	0	0	0	0	0	0	0	0	0
AAATAGGATCGGTCGT	alt_5240_reverse	52	86	76	52	82	64	90	55	74	59
GTCACTCTGTCCATTT	alt_5240_reverse	87	98	106	73	89	82	82	82	87	80
GAAAGCTCTCGCTCCG	alt_5240_reverse	2	0	4	3	9	2	5	1	4	3
ATTGGGCAAGTTGGCG	alt_5622_new	15	22	17	12	24	13	25	13	14	8
ACCTGCTGCTACTCAA	alt_5622_new	6	8	11	5	18	9	24	8	15	6
CCGCATTCAGTTGTCT	alt_5622_new	115	232	117	135	246	111	233	124	255	110
GGAGTAAAATCAGGCC	alt_5622_new	16	20	30	19	25	10	26	16	21	14
TTGATCGGTTCCTGAG	alt_5622_new	95	169	126	81	209	95	165	90	167	80
GACTCCTCAAAGGTTT	alt_5622_new	118	204	151	116	205	139	189	108	233	109
GATCTGTTAAGACCCG	alt_5622_new	7	11	10	4	12	6	3	6	9	11
CAGTCTACAGTGGTTT	alt_5622_new	5	8	4	3	9	7	11	3	8	4
ACAGTCTCATTTGATC	alt_5622_new	0	0	0	0	0	0	0	0	0	0
TTCGCCGTATCAGCAA	alt_5622_new	0	0	0	0	0	0	0	0	0	0
ATCGTTTTAGAGCCAT	alt_5622_new	28	48	43	40	45	26	59	32	44	29
TACGTTGTCACTGTGG	alt_5622_new	0	0	0	0	0	0	0	0	0	0
TGGTTCCTCATTGCAG	alt_5622_new	0	0	0	0	0	0	0	0	0	0
CTGGGTCAAGGGCTCT	alt_5622_new	0	0	0	0	0	0	0	0	0	0
GTGGAGACTCCGTGCA	alt_5622_new	58	84	65	69	92	56	81	61	86	60
TCTAGCGACGATGTAC	alt_5622_new	0	0	0	0	0	0	0	0	0	0
AGGTGGGTAGGTGGCA	alt_5622_new	30	49	38	24	42	26	42	33	73	26
TCACTTAAGCTTTCTG	alt_5622_new	12	16	14	21	16	11	13	13	14	13
AGAAATGGTTTCTTCC	alt_5622_new	2	6	4	3	7	5	1	1	2	1
CTGCCCAATAGTATCC	alt_5622_new	0	0	0	0	0	0	0	0	0	0
CTCAGTCCCTTGGAGC	alt_5622_new	10	22	15	16	20	15	29	14	26	10
TATCTGGATGAATCTT	alt_5622_new	26	38	49	29	36	34	54	28	45	24
TTCACTTCGTAGAACA	alt_5622_new	3	3	0	4	2	3	3	0	8	2
TGCATTACTCCGGTTA	alt_5622_new	35	42	27	32	55	29	67	31	44	26
TAACAGCCTCATTGCC	alt_5622_new	36	48	48	40	66	19	58	33	46	22
GCCTTTTATAGTTCAC	alt_5622_new	52	77	40	44	70	47	88	39	67	42
TTGCTGTCTCAGGTAG	alt_5622_new	0	0	0	0	0	0	0	0	0	0
GTTTAAGAAGATCTAA	alt_5622_new	60	89	63	43	66	52	73	30	90	48
GTACAGGTGGATCCAG	alt_5622_new	0	0	0	0	0	0	0	0	0	0
CCTGGTACGTGCATAG	alt_5622_new	4	8	6	3	13	3	10	5	8	7
TTACCACCCTGTTGAG	alt_5622_new	1	6	1	0	8	2	2	4	1	1
CCTATGACACATTAGC	alt_5622_new	0	0	0	0	0	0	0	0	0	0
TTACGCCTAGTAGGGG	alt_5622_new	0	0	0	0	0	0	0	0	0	0
CGTCATACTACGCGTG	alt_5622_new	12	20	24	23	22	18	25	9	24	13
CTTTCTGCGGAGTGAT	alt_5622_new	0	0	0	0	0	0	0	0	0	0
TCTCACAAGCGTAGGG	alt_5622_new	0	0	0	0	0	0	0	0	0	0
CGTTGTTTTAGGCGTT	alt_5622_new	37	81	60	45	70	46	76	53	96	49
GAATTCCGGCGCTCAT	alt_5622_new	0	0	0	0	0	0	0	0	0	0
GGTTTAGGGCTAAGAT	alt_5622_new	4	10	1	4	2	3	7	1	4	0
ATGAGTTAGTCTATTA	alt_5622_new	45	70	57	43	68	48	72	31	68	34
AACGCACGACTAATGA	alt_5622_new	21	64	46	41	59	34	58	42	59	29
TGAGTTGTTTGTACCA	alt_5622_new	43	99	70	53	94	40	89	61	93	40
TTTGGACGGTATCGTT	alt_5622_new	104	159	145	92	153	107	164	79	207	104
TGCTTCGTACCCAGTT	alt_5622_new	0	0	0	0	0	0	0	0	0	0
GTACTACCGGGTTCCC	alt_5622_new	1	4	4	5	9	3	2	5	3	3
ATCCACCCTTGTTGCC	alt_5622_new	5	33	2	4	16	3	33	7	30	2
CTGGGGTGTCCGCCTC	alt_5622_new	0	0	0	0	0	0	0	0	0	0
CTTTGCAACAGGCCTT	alt_5622_new	10	7	11	14	14	11	8	4	6	5
GCGCAGTTGGAATACC	alt_5622_new	40	45	27	24	36	23	49	16	45	19
TTTGTGTTAATATTCC	alt_5622_new	7	12	13	13	16	9	6	10	15	7
CAGGCGATTCGATATC	alt_5622_new	30	52	40	27	55	37	34	34	53	29
AGCACTGTAGGGCCGT	ref_556_upstream	74	58	104	67	48	72	79	80	73	80
GATGTCTATCGTTGTT	ref_556_upstream	35	16	26	30	27	49	27	28	34	30
TCAACTTGGTGGGGAT	ref_556_upstream	17	4	8	10	7	7	6	13	4	12
CTAGCTTCTTGTATAT	ref_556_upstream	24	21	20	11	25	18	22	22	22	18
ATTATTTGTTATGGAG	ref_556_upstream	324	219	411	321	263	293	230	344	271	310
TGTACCAAAAAACTCC	ref_556_upstream	26	28	34	24	22	29	31	28	20	31
CAGTATTTGAATAGGG	ref_556_upstream	62	44	79	67	56	50	70	74	74	57
ATTCGGAGATTAATTG	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
GATATGTATGCCTTAA	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
CGCTCCGACCATCTGC	ref_556_upstream	11	8	17	11	9	15	11	13	9	15
CCTGAAGAACGCGCTG	ref_556_upstream	33	30	47	39	36	32	34	36	32	26
AAGCAGCAAATAATTT	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
CCTGGCGTCATTAGTG	ref_556_upstream	14	27	31	28	31	31	26	20	41	19
TAACCATCCTTGATTA	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
ACGTCGCAGTGTCAGA	ref_556_upstream	79	61	112	86	65	84	65	97	64	70
GAGACCTGTACTCCCC	ref_556_upstream	13	12	21	19	9	13	19	9	21	8
TGTTTGTGTACTCTAT	ref_556_upstream	35	44	53	38	46	48	43	36	36	43
TAATCTAAGAGCCCAC	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
GTCTTGGATAATACTT	ref_556_upstream	24	20	33	40	21	27	28	23	24	37
CACCCTCGTAGCTGTC	ref_556_upstream	133	103	180	151	80	158	101	139	92	145
TCCAGTTTTGCCCATT	ref_556_upstream	40	29	55	53	48	51	45	40	35	53
TTACGTTACAGAGTAT	ref_556_upstream	249	183	268	194	146	231	175	219	177	223
CCTGCAGCGCATTGCA	ref_556_upstream	130	76	175	109	125	103	130	106	110	119
TCATATGTTAGGTTTA	ref_556_upstream	54	34	66	46	45	52	32	48	43	54
AGGGATCATTATATTT	ref_556_upstream	53	36	80	42	36	39	43	47	33	45
TTCATAACTCATTCAG	ref_556_upstream	10	5	15	10	5	13	12	14	8	12
TATCAGAGGTTGGAGT	ref_556_upstream	33	20	45	26	15	30	25	35	17	22
ATCCTTTTGCCTCTGA	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGAGTTGAAAATC	ref_556_upstream	42	36	70	52	41	51	52	52	30	39
CCGTCTGAAGGCTCCG	ref_556_upstream	162	108	210	132	136	141	133	150	113	130
TCCTCGAAGAATCTTT	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTGGGTCATGAAC	ref_556_upstream	37	33	35	32	34	31	23	35	29	39
GACAGATCATTCTCCC	ref_556_upstream	32	24	17	17	16	15	23	18	18	21
ATGTGTTTCCGGGTGT	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
CGTATTCGGCAACGGC	ref_556_upstream	45	29	43	24	33	36	33	33	19	24
TTGTTAAATCATGGGC	ref_556_upstream	20	12	16	13	10	17	11	15	10	9
TACTGGTGAGGTCCGG	ref_556_upstream	100	79	97	85	65	95	78	74	79	88
ACCGGTATCTGGTAAG	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
ACCTTACTATAACCAC	ref_556_upstream	7	5	22	15	7	19	3	14	15	5
ACAGAGAGGCCGCTGC	ref_556_upstream	62	41	67	55	25	48	41	40	36	51
GTACACCTCGTGTCTT	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTTGCAATATTTG	ref_556_upstream	96	66	85	73	63	73	94	88	64	83
ACAGACTTGGCTCAAC	ref_556_upstream	13	6	18	16	14	12	10	17	13	13
TGTGTCCGCTCGCCAG	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGGAGATTAATTG	ref_556_upstream	157	134	190	148	89	170	139	122	134	131
CTCACAGCTTCGGGCG	ref_556_upstream	209	158	292	208	130	227	154	236	146	214
ATAACATATTGCCGGA	ref_556_upstream	92	50	134	72	54	85	68	73	58	81
TATGGGACTGTCGAGC	ref_556_upstream	39	19	46	34	21	30	39	26	21	19
CGAGGTACGTGCTGGC	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
ATTTGGAGCGTTTTGC	ref_556_upstream	38	36	44	40	35	37	47	38	38	40
CCTAATATCCGAGCGA	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
ATCATTGTGAGTCCGT	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
TGGTGCGCACTGAGGT	ref_556_upstream	79	112	93	61	75	70	94	75	106	80
ATGGTAGGCTGGAACA	ref_556_upstream	44	18	50	41	21	36	26	43	40	41
GCCTACCCTAAGCCTT	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
GATCAATTAATTCACA	ref_556_upstream	0	0	0	0	0	0	0	0	0	0
CCTTACGAGGACCGTC	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
TAGATGTTAGACCCCG	alt_1947_missing	4	2	4	2	1	4	5	1	6	2
GCTGAGCCGGGGTTTT	alt_1947_missing	2	2	3	1	4	1	3	0	4	3
ATCGTTGAAATGATGG	alt_1947_missing	12	23	13	13	19	14	22	15	19	10
GGATACCGTGAGTAGT	alt_1947_missing	25	29	18	22	22	19	33	22	47	19
TCCGGATAATAGGAGC	alt_1947_missing	18	36	22	26	39	21	24	21	25	24
TAGTATTACCCTCTCC	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
CAATACCGGCATGACT	alt_1947_missing	27	24	25	24	37	33	25	14	37	24
TCAACGCCCAAACTGG	alt_1947_missing	2	1	2	1	0	2	1	0	3	0
AGTAGACATGTCGGTC	alt_1947_missing	13	12	10	9	21	10	8	7	18	16
GCCCGAAGTATCGCCC	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
TTCAGGTGCCTTGGTG	alt_1947_missing	7	15	7	8	12	6	15	7	23	9
GATAGGTACCACAGTT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
GGGAGTCGCTTTATTT	alt_1947_missing	21	34	24	30	39	24	26	34	49	20
GATTCCCCTGTAACTT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
TGAGGCGATATGAATG	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
CATCTGTGGTCTTTCA	alt_1947_missing	16	28	26	24	38	33	25	12	48	21
TAGTCGTTATTATACG	alt_1947_missing	34	49	25	21	25	18	58	19	46	16
GGGGATTTTCCTGTCA	alt_1947_missing	35	61	52	31	56	27	75	33	83	29
GAGGTGCGTCCATTAA	alt_1947_missing	7	14	5	8	14	8	17	5	12	5
AATTTTCCAGGAATTA	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
ATACTAGGTCGCATTG	alt_1947_missing	1	4	2	3	10	5	6	2	2	9
GGACGATAGTAGGACG	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
CCTAATAACCGCCTTT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
GCTCTCAAGCGTTTGG	alt_1947_missing	1	3	2	0	0	1	0	1	4	0
CCTAGGTTTGAGTTGA	alt_1947_missing	9	20	9	9	25	5	34	15	28	5
GTTTGATTAATAGGCG	alt_1947_missing	7	5	10	8	14	10	11	3	10	5
GGAAAAAGTTTCAGAT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
CCTAAACTCAAACTGT	alt_1947_missing	36	40	30	14	57	27	56	27	40	14
CTATACGTGTTATGGC	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
GCTCCGATATAGTTAA	alt_1947_missing	7	10	5	5	16	1	14	5	11	3
CTATTTTATCCTTTAT	alt_1947_missing	13	34	24	10	30	24	28	8	38	6
CATTTCTATGTTCCAA	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
CCTCTTGGCTAAGTCT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
CATACCAGGCTAGTGA	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
AGGGAAGTTTCAGGAA	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
ATTCCCAGCACCTCAC	alt_1947_missing	1	5	4	5	3	2	3	1	6	0
GCGAGTTCAATTCCGA	alt_1947_missing	23	32	29	16	31	10	41	24	25	14
ACTGGGAGTGGCGCTA	alt_1947_missing	21	25	24	23	36	18	36	24	45	18
CCTTCCTCCCCCTCTC	alt_1947_missing	7	22	10	12	19	11	16	9	22	7
ATTTCAGGCTTGGTGG	alt_1947_missing	6	17	9	7	18	10	11	8	13	5
TTAACTTGAGACAGTG	alt_1947_missing	6	2	1	1	4	5	6	5	3	1
GGACTCTGACTTCCGG	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
TTATCCTTCTATCAAC	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
TACTTACTTATGTCGA	alt_1947_missing	1	19	3	3	15	3	23	2	12	1
ACCCAATGTGAGGTGT	alt_1947_missing	5	15	13	12	9	5	8	9	10	3
AAAATCGGCCGCAGTT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
TCCCCCCAGGCAGTAA	alt_1947_missing	12	83	22	15	94	15	94	21	102	21
GATGTCCTGAGGGCGG	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
ACTCTCTACTCTTCTT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
ACCAATTTCGCACTTC	alt_1947_missing	15	31	11	9	23	15	23	12	19	13
TCGGATGTCTCTTCAC	alt_1947_missing	4	9	6	5	3	3	0	6	8	1
CCTTTGAACCGAATTG	alt_1947_missing	14	52	21	11	45	11	55	13	50	15
TCCGCGCGTACTGGGT	alt_1947_missing	0	0	0	0	0	0	0	0	0	0
CTACTATAGATTTTTG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
ACAACTGCGTAACTAT	alt_2942_missing	16	25	22	11	20	18	23	20	28	15
TTCTTGGCTTTGATAT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GATCCCGTGTAGTTTT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TCTATAAACATTTATC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TTAATTATGCGGCTTC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
ATTTGGTCGCCATTAT	alt_2942_missing	4	2	3	1	0	1	1	2	1	1
GCAAATAGGGGGTGCG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TCAGCACAGAAGCGAT	alt_2942_missing	3	5	5	5	1	5	11	3	4	3
TGTCTCGGTTTTGTAA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GAGGTTGGTTTATCTC	alt_2942_missing	16	15	6	11	19	10	20	6	15	12
GCCTGTATGGTGTCAT	alt_2942_missing	1	5	4	3	4	4	7	6	4	2
AGCTCAGTATGTACAC	alt_2942_missing	23	42	26	22	30	20	41	22	33	19
AAACCGTGCCTGGGTC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TTGTAATATAGTACGG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CAGTGGTTGACTGTGG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GATTACTGAGAGTTTG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CCGGCACCTCCTTTCC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
ACTTTATCTCTTTGTT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TCATTCGTGGCTTCGT	alt_2942_missing	5	13	9	11	7	7	7	10	13	6
CAGTCTGGGATCGAAC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TCTCGAATATCATCCT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TTCCGTAGCTTCTGAA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
AGAGGCGCAGGGAACC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CATTCTCGGAGTGGCG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GCAAATATCGAAAGGA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GATCGTTTGCTTTTGG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CGTGTTAGGGTCGCGG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CTTTTGGGTTTTTTGA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GCGTTATATAACACCT	alt_2942_missing	23	31	22	25	42	28	42	34	39	24
CTGGGCTCTTTCTCCT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GCAATCTCACGAACAA	alt_2942_missing	22	26	35	26	37	31	31	18	31	13
CCGCTTAGGCACGTCG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
ATGGCCTGGTAGTGAA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TTTCGGTCCTAGCTCG	alt_2942_missing	3	17	7	5	6	9	15	7	10	6
CGTCGATGAAGTTTTA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GTTTTGTCTGCTATTT	alt_2942_missing	16	10	11	6	11	13	17	9	15	8
ATTGTCTATCCGGAAC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TAACCGGTTCCAACAC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GCTATTTGCATATTAT	alt_2942_missing	1	0	0	2	1	0	0	1	0	0
CTTTCAATAGACGTTT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CGACCCGAGTAGTGTG	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CTTTTGTATCCGGGTT	alt_2942_missing	18	23	33	17	14	20	26	15	23	14
TGCGCCGCTCCGTCTT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GCCAGCCGGCAACACT	alt_2942_missing	1	0	0	0	1	2	1	0	3	0
CTGATCCTTAGCGGAT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
AGTCTGTAAATTTGGT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CTGGAAACACGGCCGA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TCTTATTTTCACCGTC	alt_2942_missing	21	18	31	20	31	24	24	20	29	16
AGGCACTATGGCCAAC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CTGTACTCTACATCTA	ref_2942_missing	23	28	18	31	18	25	22	19	33	19
CATGACAGTAACCTAA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
ACTATAAGCCCTCCCT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TCAGCTGTACGTGGAC	ref_2942_missing	19	26	33	24	32	20	36	13	32	24
ACGTCCCTGACTGATA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GCCAATATTATTTGAC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
CGGCGGCTCTCTGCGT	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
TAAGTCTCACTGGAAG	alt_2942_missing	4	11	7	6	12	5	11	4	17	3
TTCGCACTGCTTACAC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GGCGAGGTCTCATCCA	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
GTCGTCTCGCAGCGCC	alt_2942_missing	0	0	0	0	0	0	0	0	0	0
AGGTTTCCTCCCTTGG	ref_5713_new	0	0	0	0	0	0	0	0	0	0
ATCGGTTCTTTCCTTT	ref_5713_new	57	53	83	70	58	70	68	68	54	73
AATTCGGGCTCTTAGG	ref_5713_new	63	53	94	70	56	59	67	70	49	60
ATGAAGATGGTATACC	ref_5713_new	0	0	0	0	0	0	0	0	0	0
AGCTACATCCGCAGTC	ref_5713_new	0	0	0	0	0	0	0	0	0	0
CTCCGCAAGGCTGCAG	ref_5713_new	74	81	74	75	90	64	83	51	88	66
TTTACCGGCGATTGCG	ref_5713_new	9	6	4	7	5	1	7	2	3	4
TATCAGAGCTCACGAT	ref_5713_new	0	0	0	0	0	0	0	0	0	0
ACCGAATGCGGCTTTT	ref_5713_new	0	0	0	0	0	0	0	0	0	0
GGTTTGGGGCGCGCGT	ref_5713_new	14	11	23	20	11	13	23	11	16	11
TACTATTCACTGCAAG	ref_5713_new	0	0	0	0	0	0	0	0	0	0
ATCCAAACTGTCAATG	ref_5713_new	6	22	16	4	16	9	17	11	12	11
TTGAAGATGGTATACC	ref_5713_new	113	124	144	103	111	107	123	99	118	102
AAACAGCTATTCTACA	ref_5713_new	0	0	0	0	0	0	0	0	0	0
CATATCTCGCGGTTTC	ref_5713_new	0	0	0	0	0	0	0	0	0	0
TGTACGTTAGGTGTCG	ref_5713_new	50	45	70	44	44	62	60	52	53	37
ACTGTTCTTTCCAACG	ref_5713_new	0	0	0	0	0	0	0	0	0	0
GCCCCTTTTGATGATG	ref_5713_new	23	18	20	22	20	22	16	27	14	25
CGGATGGTGAGACTCA	ref_5713_new	29	29	30	31	16	34	19	18	22	28
TACAACCGGGATGTGT	ref_5713_new	2	9	21	9	11	8	17	5	7	15
TACCGTCACGGCCATT	ref_5713_new	12	12	24	29	24	18	21	17	29	15
TTGGTGTGTATATAGT	ref_5713_new	26	41	33	29	38	34	46	30	31	28
GCAGTCTGAGGGCAAT	ref_5713_new	58	55	71	62	60	77	71	63	75	57
TACACATACCGCTCCG	ref_5713_new	13	25	18	17	29	11	41	18	25	9
GCAGGATCCCGGGCCA	ref_5713_new	0	0	0	0	0	0	0	0	0	0
CAAGTTTCAATTCCTG	ref_5713_new	21	25	29	32	27	19	36	24	32	25
CACATCGTACTCTGAG	ref_5713_new	8	5	12	9	7	10	17	3	14	13
GGGAGCAGGTTGTGCT	ref_5713_new	48	41	46	37	36	36	36	42	49	43
TTGCTCTAATAATTAT	ref_5713_new	42	43	60	41	21	39	39	38	43	30
AAATACAAGGCCGGCA	ref_5713_new	29	27	25	32	22	22	19	33	17	21
TATTCGATTTCCCTTG	ref_5713_new	0	0	0	0	0	0	0	0	0	0
TGGAGGCCGTTTGCTT	ref_3893_missing	7	5	14	3	11	3	6	6	7	4
TGCTGTATATGCTCTG	ref_3893_missing	142	185	180	145	210	140	183	127	175	137
CCATTTACGGTTGAAA	ref_3893_missing	20	24	28	19	27	15	19	21	14	21
TCTGACCCTAGTTGGC	ref_3893_missing	69	120	101	58	105	69	103	74	126	55
GCCGCTAACCCGGCTA	ref_3893_missing	41	59	43	53	58	49	68	33	69	35
CAAGACCGGTACGTTC	ref_3893_missing	14	9	5	6	8	5	12	9	1	6
TACTGGTACCCCCAGG	ref_3893_missing	0	0	0	0	0	0	0	0	0	0
CATTTTTCTTGTCGCA	ref_3893_missing	62	73	82	58	72	63	83	58	85	66
CCGAACCTAGGGTTCT	ref_3893_missing	5	9	8	8	12	5	8	5	16	1
TTTATATCTATCAGAC	ref_3893_missing	17	32	22	18	33	18	24	18	24	14
CGTGATCACTTCTTGC	ref_3893_missing	4	27	19	16	18	16	21	15	31	10
TGGTTTTATGGTCCCT	ref_3893_missing	3	7	7	7	9	12	5	6	7	10
TGGCTTTGTCCAAATT	ref_3893_missing	0	0	0	0	0	0	0	0	0	0
TCTACTACCCGGGATG	ref_3893_missing	10	20	20	22	23	13	28	15	23	12
ACGGTTGGCTCAACGT	ref_3893_missing	20	46	32	26	33	29	34	21	35	16
CTCTCTACTTCGAGCT	ref_3893_missing	0	0	0	0	0	0	0	0	0	0
CCCATTTCATGAGCCC	ref_3893_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTAGAATTTAAA	ref_3893_missing	35	56	35	36	46	39	46	31	47	32
TTCTCGTTGTTTCTCT	ref_3893_missing	0	0	0	0	0	0	0	0	0	0
AGTATCTTAGAAAGGT	ref_3893_missing	66	62	48	52	67	55	67	52	78	49
TTTTTACGTACCGTGA	ref_3893_missing	8	15	6	11	22	6	14	3	16	3
TTTTGTGATGATATGT	ref_3893_missing	34	47	48	36	50	31	45	23	44	20
AATTTTCTGCTTCATC	ref_3893_missing	0	0	0	0	0	0	0	0	0	0
AGTCTCCGACTTTGGG	ref_3893_missing	15	14	12	21	10	12	9	13	11	4
CAGAAATTCGGTAGGG	ref_3893_missing	0	0	0	0	0	0	0	0	0	0
CATGCATTTTTCCTTG	ref_3893_missing	50	66	65	46	69	55	60	34	66	44
TTCCCGTTGATTTGTC	ref_3893_missing	148	176	171	140	194	117	196	129	184	135
TCTGGTTGGGTGTACC	ref_2754_fdr	11	26	16	17	40	12	19	7	15	9
CCATTTGCATTGCGCC	ref_2754_fdr	54	70	71	57	76	58	88	50	95	39
CGGTTAAATGCTAGGA	ref_2754_fdr	26	50	27	23	37	34	50	21	51	16
CGCAAAATCCCGACAA	ref_2754_fdr	7	13	14	10	23	17	24	10	18	14
ACTACCAGTGCAGTGA	ref_2754_fdr	114	168	126	125	185	108	166	105	184	111
CAACCATGATTCGCTA	ref_2754_fdr	31	50	32	32	49	34	54	32	63	21
GTGCTGCACTCTCTGC	ref_2754_fdr	11	38	18	8	55	9	59	8	48	10
TTGGCGTGTGCGTTTG	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
ATAGCTTCTGAAATAG	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGTTTCAGTAAGG	ref_2754_fdr	9	12	17	4	22	10	8	12	17	11
CGTAGTGTTTCATTGC	ref_2754_fdr	195	299	267	206	291	213	290	188	367	204
TGACGGGTCACATCTA	ref_2754_fdr	30	35	45	30	35	34	36	30	35	29
GTAGCTGAACCGCTCT	ref_2754_fdr	44	68	37	37	84	40	85	58	77	43
GCTCTGTAATAGCTGT	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTCTTATTGTCC	ref_2754_fdr	33	38	34	42	46	24	51	33	41	36
TTTTGACACAACCGAA	ref_2754_fdr	7	6	8	10	15	10	17	6	9	5
CAAATGTCCCTTCAGC	ref_2754_fdr	83	119	120	103	123	71	125	87	155	71
GGTGCTTTACCAGTCC	ref_2754_fdr	119	194	152	108	179	106	182	106	184	113
TATATTGTTCTGTCTA	ref_2754_fdr	63	168	92	70	145	84	138	103	177	73
ATTGCGTTCATTGTCG	ref_2754_fdr	128	202	151	161	191	125	249	130	218	120
GTTGCCCCTTTAGCAT	ref_2754_fdr	11	25	28	16	27	21	28	24	34	13
TTATAATTATGCCCCG	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TCTATTCCAGAAATGT	ref_2754_fdr	88	90	80	59	79	66	105	58	90	67
TGTCTCTGTGATTGCG	ref_2754_fdr	2	2	4	1	3	1	2	4	2	1
AAGTTGCCTGGGCTTT	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAGCCGACTGTAT	ref_2754_fdr	12	30	36	19	22	14	24	13	27	19
TCTCTAGTCCGGTGTA	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TCGCAGCCTCACACTT	ref_2754_fdr	14	28	20	18	27	19	40	12	25	12
CAGGTGCGTGCTTGGC	ref_2754_fdr	50	93	55	55	75	42	87	47	102	56
AACCCTTAGTATTTTC	ref_2754_fdr	22	38	30	21	35	28	60	31	44	34
TGTTCATATCTGCTAA	ref_2754_fdr	16	18	15	8	20	18	26	12	36	19
ACTCAAAATCACTGTC	ref_2754_fdr	35	63	54	43	62	42	73	43	73	39
CGTTTTACATAGTCTG	ref_2754_fdr	62	77	77	48	102	43	84	40	90	48
ATTTTTTGTAGATCCG	ref_2754_fdr	127	159	163	136	149	119	184	116	186	105
AGATTTTCGCCTAGAA	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTACTTGTGTATA	ref_2754_fdr	7	17	8	7	11	4	18	6	13	12
CCCTTGAGCATCGGGA	ref_2754_fdr	39	60	48	41	51	29	59	26	46	28
GGTGAGATCTTGTGGT	ref_2754_fdr	7	15	14	19	27	13	20	10	11	11
CTAGCTGGAGTAGGCG	ref_2754_fdr	2	5	4	4	1	0	11	1	7	5
CAACAGCTATACGGTT	ref_2754_fdr	3	11	2	2	5	6	3	3	11	8
TACGTCTAGTGGGGAC	ref_2754_fdr	53	110	106	93	145	98	118	69	116	77
TTTTCTCTTAATTTCT	ref_2754_fdr	27	39	34	36	43	21	33	23	41	25
CTTAAACCTACAATTC	ref_2754_fdr	22	52	22	23	51	36	58	28	54	22
TACACAGAGGGGTATG	ref_2754_fdr	23	46	51	54	47	36	59	37	43	27
ATACCTTTCTAGAACA	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
ACTAGTATTATCTTTT	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGGTCCCTCATTT	ref_2754_fdr	18	39	26	34	36	19	55	17	41	22
AGTCCAAGTGCGTTCC	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGTCCGTTCAGAG	ref_2754_fdr	20	54	33	29	31	29	49	26	48	26
TTGTTTGGATAGGAGT	ref_2754_fdr	93	153	126	117	173	91	168	100	170	81
CTTGTGCTTGTCCGAG	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TGCAATAGCGATAGGT	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TAACTATGTGCAGAGG	ref_2754_fdr	13	28	19	24	37	18	22	14	27	16
GTGTCTTTTTGTTCCG	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TGTATATAATAACATG	ref_2754_fdr	12	26	28	17	21	14	29	20	28	14
ACACGATTGCTTTAAG	ref_2754_fdr	41	62	42	58	66	44	76	33	72	39
CTTACGGTAAGGCTGT	ref_2754_fdr	10	38	13	9	48	9	30	3	34	12
ATCATTCTTGTTATCG	ref_2754_fdr	26	47	36	31	57	24	51	28	62	32
TGCAAGCATCGAAAGG	ref_2754_fdr	30	30	21	22	27	21	31	17	37	24
TGGAAGCCCTCGATAC	ref_2754_fdr	19	34	29	22	30	22	36	21	25	20
ATTTTTATCTCGGTCC	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGTATTAGCCGTC	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TCCACGGCTCCTCGAT	ref_2754_fdr	36	46	56	49	45	35	52	36	44	39
AGTATTCCACTAACGT	ref_2754_fdr	33	53	33	27	50	25	50	43	64	21
CTCCTCAATGCGGATA	ref_2754_fdr	46	109	50	60	125	61	112	69	134	48
ATAGCTTCCGAAATAG	ref_2754_fdr	114	163	162	132	197	119	176	111	175	89
GTGGTGAGGGCCGGTC	ref_2754_fdr	116	180	151	127	189	97	206	102	186	117
CATATGTCAGCTAATT	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
GCGACTTAGTTTTGAT	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTCCTGTCTCCAC	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
CTTTGCCCCAGCTGGA	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGCGGTTTTTACG	ref_2754_fdr	13	13	11	8	26	12	27	15	15	12
CCCGTTGGAAGGTTAC	ref_2754_fdr	41	54	38	25	41	26	59	26	77	16
TCATTATAATAGTACT	ref_2754_fdr	4	5	9	3	14	4	14	4	9	2
GGTCCATTCTAAGTCC	ref_2754_fdr	15	34	38	16	29	19	32	12	43	11
TTCGATCGTTGGTTCT	ref_2754_fdr	7	14	7	9	12	9	15	10	13	2
TTTCTTTTATCGGCTT	ref_2754_fdr	156	193	204	154	198	169	201	133	220	126
GAAGATTTCATAGACT	ref_2754_fdr	3	5	10	5	8	8	9	4	5	2
ATCCAGCGTTCAGCAT	ref_2754_fdr	15	19	13	15	23	12	23	17	32	10
ACTAATGCTCCGCGTA	ref_2754_fdr	10	11	14	23	15	11	23	13	22	8
CGAGATCATAGTTCCG	ref_2754_fdr	106	113	116	94	111	96	113	86	122	73
CCCGCATTAGAGTTTT	ref_2754_fdr	36	80	44	28	69	40	63	44	93	39
TAGGGGCGATCCTGCC	ref_2754_fdr	27	19	29	27	24	17	25	15	29	22
CATTATCGTTTTTCCA	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
GATGCTGTAGTTGGCA	ref_2754_fdr	9	13	9	2	7	10	12	12	9	6
TGCGCCATTATCCAGT	ref_2754_fdr	10	15	5	7	3	4	9	7	10	6
CGGGCAGTCAAGTGTG	ref_2754_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGTTAGTTTGCGA	ref_2754_fdr	3	41	5	7	52	8	48	7	54	3
AATTGTGATCAGTTGT	ref_2754_fdr	19	26	23	14	20	15	41	20	37	9
TTATCGTGCCTGGGCG	ref_2754_fdr	21	32	24	19	30	15	26	21	35	9
GTTTTAGTCTTGTGGG	ref_2754_fdr	185	358	201	213	328	165	338	172	291	177
ATACAGTATCACCCGC	ref_2754_fdr	10	10	4	7	4	6	9	4	5	6
GCCTAGGAATGTCCCA	ref_2754_fdr	64	103	75	76	107	53	114	56	122	64
TCTTGCATTAGTTAGT	ref_2754_fdr	9	7	5	11	17	4	20	5	14	4
GATACCGCATAACAAA	ref_2754_fdr	4	15	13	11	18	7	7	11	15	14
GATTTCTAGTACTATA	ref_2754_fdr	2	3	3	5	2	1	6	1	3	0
TATGGTCCAGCGTCGT	ref_2754_fdr	30	30	36	23	43	20	45	31	33	38
GCTTATCTCCGTCCCA	alt_386_missing	64	60	74	42	99	53	100	59	94	57
TAAGTCTCGGCTCTTC	alt_386_missing	60	123	63	60	87	73	117	58	111	58
AGGTCCTTGCTAACGC	alt_386_missing	12	20	13	11	18	13	16	9	21	12
TTCCGAATCTATGCTT	alt_386_missing	34	82	49	34	70	43	68	35	102	31
TTTCCCTTCCCGGGGG	alt_386_missing	0	0	0	0	0	0	0	0	0	0
ATGGAGTTTTCACGAC	alt_386_missing	48	83	62	51	99	62	94	49	98	50
GGCGGTGGCGTTCGCA	alt_386_missing	7	27	20	13	25	6	26	13	37	13
CATCAATCGCGCGGTT	alt_386_missing	40	53	45	46	77	36	51	30	69	17
TGTCCGCGCCAGTGAA	alt_386_missing	15	25	8	10	17	10	14	20	12	12
CTTAGGAAACCAACAT	alt_386_missing	22	57	30	32	48	17	50	18	57	21
GGTTGGCGTCCAGTAT	alt_386_missing	0	0	0	0	0	0	0	0	0	0
CCAGAATTCATCCGGT	alt_386_missing	8	15	6	9	14	1	22	9	10	3
GACTCGAGCCGTTAGT	alt_386_missing	0	0	0	0	0	0	0	0	0	0
CACGATCACGCGCTAC	alt_386_missing	10	17	16	13	17	15	21	13	34	15
TACCCAAGAAAGTATA	alt_386_missing	0	0	0	0	0	0	0	0	0	0
TGACTACCTTAGACTC	alt_386_missing	185	329	210	194	369	161	392	204	344	173
TGGTGACTTTAGTTAT	alt_386_missing	35	64	36	24	53	31	55	27	67	26
AATGGGTCTTGCGACT	alt_386_missing	26	50	36	41	65	41	52	22	66	34
CGTCACCATATGTCAG	alt_386_missing	7	20	8	8	31	5	38	12	42	5
GACTTGCCCCACGCCT	alt_386_missing	0	0	0	0	0	0	0	0	0	0
CCGCAATTTTTTGGAG	alt_386_missing	56	106	54	39	122	41	116	53	104	50
GTACCCTCTGGAACTC	alt_386_missing	103	258	139	134	288	115	255	80	280	114
TGACATGAACGATGTC	alt_386_missing	15	17	13	16	18	12	18	11	19	8
GTTCGTTACGGGGGCT	alt_386_missing	0	0	0	0	0	0	0	0	0	0
TGTATAAAACGGTATA	alt_386_missing	59	131	86	74	161	58	155	62	151	68
AACTTCGCCGCGCCAT	alt_386_missing	11	17	10	11	31	14	22	21	17	7
GTTTAATTTCATCATT	alt_386_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTGGTCTCTGAT	alt_386_missing	0	0	0	0	0	0	0	0	0	0
GATGCGCTCATTGCAC	alt_386_missing	0	0	0	0	0	0	0	0	0	0
CTGCGGCCTTTCATAA	alt_386_missing	0	0	0	0	0	0	0	0	0	0
AAGAGTTAAGAGACCG	alt_386_missing	78	123	89	62	144	73	150	66	157	65
TGACTCTATAGCGCGG	alt_386_missing	0	0	0	0	0	0	0	0	0	0
AAGAACTCAAGAGTGC	alt_386_missing	48	85	52	42	91	44	83	41	87	43
CACATGTCTACTCGAA	alt_386_missing	0	0	0	0	0	0	0	0	0	0
CTGTGTGTTAAGCTAA	alt_386_missing	4	5	1	3	3	1	4	4	2	1
TAGGCCCCCGGTTTCG	alt_386_missing	2	8	12	2	6	4	7	6	8	1
TCCCTTACGTCAGGAA	alt_386_missing	0	0	0	0	0	0	0	0	0	0
TGGTAGATCCCCCATA	alt_386_missing	70	108	80	73	109	69	108	76	113	58
TCCAGGCGGCCGTATC	alt_386_missing	43	71	45	36	90	39	84	51	106	29
TGGGTTAGATCCGGTC	alt_386_missing	5	9	1	4	11	4	13	3	10	0
GTTTGAGCTTTGCCCA	alt_386_missing	78	135	67	55	126	62	142	74	128	48
TGANTACCTTAGACTC	alt_386_missing	0	0	0	0	0	0	0	0	0	0
ACCCCTGTTTAGCATT	alt_386_missing	5	6	15	4	13	4	8	10	13	5
CTATGCCATAGCCCGT	alt_386_missing	3	4	0	2	2	2	5	0	1	1
CTGACCTGATGTCTGG	alt_386_missing	21	21	18	11	30	13	35	17	35	12
ACGTGGTGAGTTCAAG	ref_5711_new	47	47	42	26	43	32	46	39	53	21
ACAGATGCACCCAACT	ref_5711_new	83	109	101	91	115	66	104	81	124	77
TTGTTGTGGGCGCTTC	ref_5711_new	0	0	0	0	0	0	0	0	0	0
TTCCGCCGCCTGCGGA	ref_5711_new	17	8	13	11	30	14	21	17	21	12
CTGCTCGGTACCTTCG	ref_5711_new	0	0	0	0	0	0	0	0	0	0
TGTATTCCTGGTTTAG	ref_5711_new	282	364	331	300	388	341	362	319	450	258
TGCGGGTTACCTATAA	ref_5711_new	1	3	7	2	2	4	3	1	5	2
ACTGCTCGGGGCTTGA	ref_5711_new	86	94	107	86	93	74	107	71	117	78
ATCGTTGGGCCTACGC	ref_5711_new	16	19	17	23	21	14	23	12	24	15
TACCAGTTAGGAGTCA	ref_5711_new	40	70	51	25	76	36	62	32	67	26
GATTCGATCGCTTTGC	ref_5711_new	0	0	0	0	0	0	0	0	0	0
CACTAGCTAATCGCGC	ref_5711_new	0	0	0	0	0	0	0	0	0	0
GACCGTCGCAAATAAA	ref_5711_new	72	68	85	63	91	54	76	63	66	57
AAAAGACACTGTGCTG	ref_5711_new	32	40	34	25	43	28	51	24	42	29
ACCATACCGCACCTTC	ref_5711_new	29	62	52	52	56	33	66	41	67	27
ATATTAAAATATTATT	ref_5711_new	18	14	12	16	11	14	12	8	16	5
AAACTCTGAAAGTTAT	ref_5711_new	32	33	32	35	36	31	34	19	33	24
TCCGTCCTTTTTTACT	ref_5711_new	37	33	28	27	18	34	29	36	45	22
CTCGGATGGACAAGCT	ref_5711_new	102	84	93	69	91	89	105	81	130	50
TCATGGTGCGGCCGGC	ref_5711_new	106	107	167	113	107	86	120	94	137	93
TACAATAGACTGTATT	ref_5711_new	11	24	20	11	21	11	20	12	10	13
CTAAGTTAGCGAGGGG	ref_5711_new	9	8	14	8	17	10	23	9	16	8
TCAACCCTTTTTTGCC	ref_5711_new	0	0	0	0	0	0	0	0	0	0
CTCGAACAGAGACATC	ref_5711_new	57	81	85	59	84	51	77	42	88	45
GGAAATATCGCATCTA	ref_5711_new	6	14	11	13	8	6	12	8	13	8
GTCTTGGTCCTCCGCT	ref_5711_new	48	54	44	30	34	39	45	36	37	37
CGTAACACTGAACCAT	ref_5711_new	0	0	0	0	0	0	0	0	0	0
TATATCCTACTAATCC	ref_5711_new	10	8	14	11	27	13	14	8	17	12
CGTTCTACAAGTTGTC	ref_5711_new	2	7	8	1	8	0	2	4	8	1
ACCCACTCTGTCTTGT	ref_5711_new	9	7	11	12	17	5	16	9	18	15
CCCTTGGATTTGCGAC	ref_5711_new	27	30	36	35	35	37	37	32	38	37
ATCTCTCGCGAAGTTT	ref_5711_new	16	20	19	22	21	19	23	14	27	11
TTTTTGTGTATGCTCG	ref_5711_new	0	0	0	0	0	0	0	0	0	0
ACCTCCGTGCTAGCTC	ref_5711_new	27	30	32	31	37	22	34	28	57	22
CATTTCCCTCTACCCG	ref_5711_new	20	34	31	23	36	24	30	23	29	26
TACGCCTATGCTGGAT	ref_5711_new	5	8	4	5	5	4	3	4	9	1
CAGTGACAAGACAACC	ref_5711_new	25	40	38	34	35	26	54	32	38	34
GGCTATCTCATTCACG	ref_5711_new	30	36	33	18	44	31	44	28	32	26
TGCACTGGAAGCGGCT	ref_5711_new	0	0	0	0	0	0	0	0	0	0
CGTATTATACATAAAG	ref_5711_new	33	29	29	24	41	23	38	25	31	29
CTTCCGCCCACATTGA	ref_5711_new	3	4	4	3	1	3	4	7	11	4
GTAGAATTTTCGCGTG	ref_5711_new	25	31	25	28	43	32	59	24	45	19
GTTTTGGTTATGTTAC	ref_5711_new	24	49	38	31	39	42	58	29	48	28
TTCTGCTGGCTCCAGT	ref_5711_new	52	67	53	58	63	47	68	48	57	44
TTGTACTTGACCTGCC	ref_5711_new	54	92	80	59	63	70	99	48	121	58
GATCCCTTACGTTGTC	ref_5711_new	17	32	29	31	38	16	34	21	26	23
TATGGTCGCATCTAGC	ref_5981_new	42	60	61	35	46	32	55	34	52	35
GTTATTGATCGGTGAC	ref_5981_new	8	10	9	10	3	4	10	8	11	3
CCTAGCTCTTTTTGAG	ref_5981_new	29	44	28	29	43	23	25	18	44	23
TTCAGAAGTTTCTTCT	ref_5981_new	27	41	39	36	27	26	41	26	28	25
TTCTGTCTTCGGAACG	ref_5981_new	59	47	62	74	49	41	57	45	59	35
TTTCTATAAGTGCATC	ref_5981_new	57	96	81	76	82	81	77	66	89	72
ATTTTCCCCACGGCTC	ref_5981_new	67	161	105	96	149	76	147	66	172	58
GGTCGGTACCACGATT	ref_5981_new	0	0	0	0	0	0	0	0	0	0
GGATCGGACCTGTTCT	ref_5981_new	95	138	138	105	137	86	113	84	135	95
GAGGCAATCAATCCGC	ref_5981_new	76	79	99	67	68	79	98	65	100	71
TAAACTATGTGACATT	ref_5981_new	0	0	0	0	0	0	0	0	0	0
GTACGTATGTTGGGCG	ref_5981_new	14	10	12	16	23	17	6	9	12	18
GAACGGAAGGACGTAG	ref_5981_new	0	0	0	0	0	0	0	0	0	0
TAGCCTTCCAGCACCT	ref_5981_new	151	187	176	147	170	155	196	165	194	154
GCTGTCAGTCTTACAT	ref_5981_new	12	3	14	9	9	12	16	7	17	13
CAGGAGTTGCAGGTCT	ref_5981_new	63	76	80	64	66	59	86	49	80	67
GTCTCCCTATTTCCCA	ref_5981_new	85	83	87	69	93	67	92	73	90	77
GGCGGCCATGAGCAAT	ref_5981_new	3	8	4	3	8	4	3	3	2	4
GCCTTCTCGATCCGAC	ref_5981_new	33	54	41	35	48	38	39	51	32	33
CTGGCCCGCTAGTATT	ref_5981_new	0	0	0	0	0	0	0	0	0	0
TGTCAGTCCCCCTTGT	ref_5981_new	70	53	94	90	52	61	63	71	54	60
TACAGGTTGTCCAATG	ref_5981_new	252	297	304	251	362	250	335	241	342	265
CTGACGTTTGCTAATT	ref_5981_new	0	0	0	0	0	0	0	0	0	0
AATATACTGTGGGACA	ref_5981_new	105	101	125	100	113	115	100	100	98	90
CGTCCGCCAGGAATGG	ref_5981_new	0	0	0	0	0	0	0	0	0	0
AATTTAGACATAAGGT	ref_5981_new	0	0	0	0	0	0	0	0	0	0
TCATGCCTTTTTTGTC	ref_5981_new	0	0	0	0	0	0	0	0	0	0
TACATCGTGTCGCCAC	ref_6075_new	7	15	12	12	13	8	11	6	9	9
TATGTATTACCGGAGG	ref_6075_new	57	76	88	57	80	53	84	65	73	40
GCTCTGAGGGCTTGGC	ref_6075_new	5	2	8	1	4	11	8	9	8	3
CTTCTTCGTGGTTTTC	ref_6075_new	7	13	16	15	12	13	23	8	18	14
AGAGGCTGACACGTTC	ref_6075_new	8	12	12	6	15	15	12	9	11	15
GCTTTCCGGCGGCTTT	ref_6075_new	14	10	11	12	7	15	6	7	5	5
CGCTGTATCGAGTGTT	ref_6075_new	40	66	77	34	54	41	57	35	76	39
ATCCGGAATATAGGTA	ref_6075_new	16	23	17	40	30	19	23	29	19	8
TCTCATCACCGCTCGG	ref_6075_new	21	25	22	28	28	22	21	22	25	23
AGGAGGTTAGGTGCGT	ref_6075_new	4	7	9	4	7	10	8	7	3	6
CGAGCTCGGTTTCGTT	ref_6075_new	0	0	0	0	0	0	0	0	0	0
TCAGGCCACTGTGTTA	ref_6075_new	63	89	72	49	84	51	97	50	91	50
AGACCACAGTACTAGA	ref_6075_new	46	49	50	55	58	35	62	33	51	44
TTAGTATGCCATTCGA	ref_6075_new	1	3	2	2	6	5	2	1	6	2
CTGTTTTGGTATTGAG	ref_6075_new	3	3	0	0	2	5	1	1	1	5
TCTATCCTAGACAGCC	ref_6075_new	31	52	65	46	53	44	77	40	59	34
GCTGACTTGTTGGCCG	ref_6075_new	0	0	0	0	0	0	0	0	0	0
ACCTCTGCCTGCCCCG	ref_6075_new	25	33	33	25	35	23	38	28	35	21
GTTATTACAGTATGCG	ref_6075_new	24	22	16	9	23	15	25	25	31	20
GTCCAGGTTTCTAGCC	ref_6075_new	51	50	58	49	67	41	43	34	61	42
CGCCGGTACGTACGCG	ref_6075_new	0	0	0	0	0	0	0	0	0	0
ATATTCGAGAGAATTT	ref_6075_new	13	9	21	9	16	11	25	14	11	11
GTTTTCTTTTATTGAG	ref_6075_new	0	0	0	0	0	0	0	0	0	0
GGATTTGACCTAGCTC	ref_6075_new	1	5	1	0	15	1	0	0	3	3
GTCAGCTTGATCTACG	ref_6075_new	57	55	56	45	45	51	49	30	42	45
GCTACGTGAAAACGCA	ref_6075_new	20	11	14	18	12	15	12	12	7	4
AGCCGCTGTTCCGGCA	ref_6075_new	16	22	29	26	22	19	39	14	19	20
AGTGTCGATTATCTAT	ref_6075_new	34	31	40	21	40	26	29	27	31	22
CCAATCCTTTGTGTCA	ref_6075_new	3	13	5	6	11	1	5	5	10	7
AGCAGAACCTGCAGCT	ref_6075_new	52	44	43	36	61	46	48	38	69	38
GCTACTGCGTCCTATG	ref_6075_new	0	0	0	0	0	0	0	0	0	0
CCTAAGCTCAGGAAGA	ref_6075_new	27	22	46	34	30	32	34	37	51	23
AGGAAATATCCAAATC	ref_6075_new	0	0	0	0	0	0	0	0	0	0
CAAGTAAAAATTGTCG	ref_6075_new	3	3	4	2	5	0	3	2	3	1
TTCATTGTCACAATGG	ref_6075_new	43	53	57	44	53	62	71	35	70	40
CGTCCACTTGGAGGAT	ref_6075_new	0	0	0	0	0	0	0	0	0	0
GTTAGTGACTTGAGCT	ref_6075_new	0	0	0	0	0	0	0	0	0	0
GCGGGCATCATGCGAT	ref_6075_new	0	0	0	0	0	0	0	0	0	0
AGTTTTGTGAGTACTA	ref_6075_new	0	0	0	0	0	0	0	0	0	0
GCTTGTTGCACAGGAG	ref_6075_new	18	19	16	11	11	19	14	6	15	6
CTGCTTATAAGAGAGG	ref_6075_new	21	22	22	19	35	14	33	11	20	9
CGCACAGCTTGTATAG	ref_6075_new	51	49	53	43	81	45	49	61	51	37
TTGAATTTCTTCTTAT	ref_6075_new	70	90	106	80	72	102	107	45	111	78
AAACTGAGTTTTATTC	ref_6075_new	0	0	0	0	0	0	0	0	0	0
CCGGTCAAATATATAC	ref_6075_new	9	24	2	5	45	7	36	8	34	9
AGTCGAAGCGAGGTTG	ref_6075_new	48	70	81	46	73	43	60	46	71	43
TTCCTCGTACAGAAGT	ref_6075_new	87	145	133	92	145	93	128	123	128	83
GTTCCATTGTAACTCT	ref_6075_new	10	3	3	1	6	2	2	5	4	5
TTATCTTTGGTGGGGC	ref_6075_new	0	0	0	0	0	0	0	0	0	0
TTCCCATCCTCGGGGT	ref_6075_new	14	31	18	16	25	16	16	16	20	14
ACCACGGATGATTTCG	ref_6075_new	13	28	16	12	23	23	15	11	20	19
CCTACGTTCTGTCTAT	ref_6075_new	0	0	0	0	0	0	0	0	0	0
TGCTCAAAGTTGTAGA	ref_6075_new	65	94	73	67	78	78	110	60	106	53
ATTAAAATTTAACCCG	ref_6075_new	6	6	8	2	3	4	6	4	0	5
TTCATGACGAAGCCCT	ref_6075_new	115	115	150	87	127	121	128	97	129	112
TCGACGTCCCCCTTGG	ref_6075_new	0	0	0	0	0	0	0	0	0	0
CATTAGGCATTTAAGG	ref_6075_new	9	5	25	18	23	12	12	14	16	10
CCATCATGTACGTTAG	ref_6075_new	0	0	0	0	0	0	0	0	0	0
ATGATGCGAGCCTTTA	ref_6075_new	18	12	16	26	29	21	28	16	13	14
CTTAGTGTTCCGGGCC	ref_6075_new	12	8	10	7	16	8	10	8	7	7
GACTCATGGATTTATC	ref_6075_new	25	23	53	26	32	21	41	29	33	19
CCTGTGCGATAGGCGT	ref_6075_new	15	23	36	14	25	16	17	16	19	12
TTTTTTAGGTTTATTT	ref_6075_new	43	72	67	51	42	42	85	46	77	53
GTTAGTTTTTGTGGGT	ref_6075_new	46	50	53	36	48	35	53	46	62	22
TCGCGTGTACGACCAT	ref_6075_new	45	45	52	53	64	49	58	49	48	36
GCATTTTTGATATTAA	ref_6075_new	0	0	0	0	0	0	0	0	0	0
AAACCGCGCTTCTTGA	ref_6075_new	0	0	0	0	0	0	0	0	0	0
CGGGCTCATGCGCGAC	ref_6075_new	6	7	6	2	3	3	7	4	3	2
ATATATGCGATCCTGC	ref_6075_new	0	0	0	0	0	0	0	0	0	0
TCAGGCTACATTAGAA	ref_6075_new	23	41	32	33	41	27	38	27	51	21
TACTTTGGTGGTGCTC	ref_6075_new	24	29	18	18	19	20	26	8	24	23
TTTTGCGTGTGTGCGT	ref_6075_new	49	55	47	39	42	38	74	35	70	31
ACGGGTATTCCACAAA	ref_6075_new	0	0	0	0	0	0	0	0	0	0
CTGTTTACAGTTTTTT	ref_396_fdr	26	23	31	24	17	37	28	24	19	30
GGTTTACGTCATTCAA	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
CTCCCCCAGATTCTGT	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGACTGCCAGATG	ref_396_fdr	23	26	39	33	27	31	30	22	34	19
TACGTCAGGCGACACT	ref_396_fdr	40	37	52	25	20	34	36	30	45	26
TCTATCTTAGCCTCCT	ref_396_fdr	83	74	77	78	58	75	59	58	55	73
AATGTGGCGCCTACTA	alt_396_fdr	38	34	32	41	42	44	42	29	41	35
TTGCAACTGTCTACCG	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
TCTTAGCTGCTGTTGG	ref_396_fdr	61	42	83	55	41	59	48	45	55	58
CGCTCCGTATTCGCGC	ref_396_fdr	13	20	15	9	21	10	8	15	15	8
AATGTACTTTAGGTTT	ref_396_fdr	10	7	14	12	8	13	9	5	16	10
GACCTTCCCTAAACTT	ref_396_fdr	27	9	14	25	21	15	22	17	15	18
AGCTGCGTCCTCGCGG	ref_396_fdr	23	22	36	27	22	35	31	28	32	36
AGTATACCCTTTCGAC	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
AAAAGCCCTAGGGTCG	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
CTAGGTTTAAAATACT	ref_396_fdr	21	39	51	32	36	33	42	28	46	26
GAGTTTGTGTTAGTCG	alt_396_fdr	149	109	187	116	98	133	128	130	136	126
GTCCTGGACTCATATC	ref_396_fdr	64	47	72	65	51	64	51	61	46	59
CCCAGATACTTTCGTG	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGGTTTTGAACGA	ref_396_fdr	82	50	67	74	69	63	55	77	63	62
CTATGTTCAATTCTCC	ref_396_fdr	20	17	28	20	14	17	11	21	12	18
CCCCGGGTTAGTCTTA	ref_396_fdr	7	4	8	6	10	4	12	4	4	3
TCCTTTACGAGCGTAG	ref_396_fdr	61	63	76	82	68	82	65	73	60	63
GATAACAGTCTATGAG	ref_396_fdr	160	121	183	124	125	144	123	137	131	147
GTCGTGTATATTCCGA	ref_396_fdr	130	112	122	124	134	103	117	103	117	118
GTCGTGTATATTACGA	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCTGGTAAAACGT	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
CAGACTACCCTAAGAG	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTCGCACTTCGGG	ref_396_fdr	64	54	67	53	52	67	42	52	71	51
TTCCCGGATTAGATCT	ref_396_fdr	38	43	36	36	29	39	31	30	48	35
GTAGGTATCCGGATGT	ref_396_fdr	45	51	74	47	46	65	39	51	55	51
CACAACTGATTCTCCA	ref_396_fdr	4	4	6	8	2	7	4	5	6	7
GCTCCGGAGACCCCTT	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
CACTGCAGATTGTGAA	ref_396_fdr	103	68	96	83	84	87	69	84	76	78
ACGTATTTTTTTTGTC	ref_396_fdr	35	24	30	21	20	21	24	21	32	27
CATCCGCCTCCTATGT	alt_396_fdr	7	9	4	6	4	7	0	3	4	5
TTGCGGAGGGCATGCT	ref_396_fdr	14	9	11	10	19	10	13	12	21	10
CCAAAATATACGGCTG	ref_396_fdr	52	69	47	37	75	43	77	36	67	33
TTCGTAGGACGAGGGG	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
GATCCGGAACGTGCCC	alt_396_fdr	39	18	31	21	33	28	29	20	16	30
AGGTATCTCTGTTACA	ref_396_fdr	0	0	0	0	0	0	0	0	0	0
CATCGGTCAGTTGCAA	alt_939_upstream	18	27	23	35	23	24	20	16	24	12
TGGAAGCTGCTTCTTC	alt_939_upstream	55	38	51	35	23	37	44	32	32	36
TCCGGGCCTGATGCGC	alt_939_upstream	19	13	25	20	18	27	27	15	15	18
TGGGCTGTGGTATTAT	alt_939_upstream	82	97	74	73	85	58	77	60	78	62
GTTGCATTTGGCCTTA	alt_939_upstream	62	51	59	64	52	43	52	45	53	48
TGGAGGGGACAATCTG	alt_939_upstream	13	10	10	11	10	14	14	11	19	13
GTGATCATGTGGGATC	alt_939_upstream	8	10	14	12	12	11	16	11	11	10
AATGAGAATTTCCGAT	alt_939_upstream	3	4	2	2	3	3	5	9	4	4
CCGTAATTTCACTTAG	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
TTTGACGTCATTTTCT	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTGTATCGCGTAA	alt_939_upstream	51	66	87	56	48	64	69	50	61	46
TCACGGCTTACCAATG	alt_939_upstream	27	27	34	29	31	31	25	22	25	15
GGTTTCAACCTCTGGA	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CTCGGGTATACCGGTC	alt_939_upstream	76	77	105	85	101	66	95	59	87	93
GTATGTCTGCGTGACG	alt_939_upstream	168	179	183	166	166	178	155	173	180	169
GTCAGCCTCTTTCCTA	alt_939_upstream	3	13	16	9	13	8	19	7	16	6
CTTTTCATGATGCCGT	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGGGCCCATGCC	alt_939_upstream	25	30	38	29	38	21	29	40	50	31
GCTCAGCAGGTCCAAG	alt_939_upstream	76	90	134	83	106	77	108	80	95	71
TGCAATATCATAAATG	alt_939_upstream	51	49	62	61	48	54	66	48	66	47
GTATTAATAGTACTTG	alt_939_upstream	63	41	65	43	52	46	50	35	45	32
GAGGCTATTAGTTTGA	alt_939_upstream	11	16	19	13	11	13	17	21	15	19
TGGGCGCTGCTTAAAA	alt_939_upstream	16	36	24	19	22	21	17	12	23	18
TATTGTCTCCTCGGGA	alt_939_upstream	5	6	7	5	5	3	0	6	5	6
ACTTACGTCTGGGCCA	alt_939_upstream	62	118	60	69	117	61	104	64	141	60
GCGTATTCTCGTGGGG	alt_939_upstream	17	15	29	17	17	17	15	16	19	22
GCCTGTCCTATTAAGG	alt_939_upstream	3	13	5	10	8	10	12	5	15	5
CTATCGCTGGTTCTAA	alt_939_upstream	36	38	41	45	36	48	57	35	42	32
GCCGGCTTTGGAACTA	alt_939_upstream	96	66	95	90	73	66	65	66	85	66
CTACCTCATTAGGCTG	alt_939_upstream	143	138	142	127	140	137	159	137	164	128
GATGATGTGATCTGAC	alt_939_upstream	11	6	7	12	6	5	13	8	3	6
ATGGCAGATATGGAAA	alt_939_upstream	14	14	14	11	12	9	12	12	15	11
GTGATGCTTCTATATT	alt_939_upstream	14	8	14	10	11	15	13	9	10	10
GTGATCAGTAGTTGTA	alt_939_upstream	6	8	7	8	7	5	12	4	10	4
CATCCGTGGGTCAGTG	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTGACGACTCAGT	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGTTCTACCCGTA	alt_939_upstream	1	6	4	0	6	0	3	0	3	0
ATGCATCTTCAAATTT	alt_939_upstream	9	10	9	12	10	11	8	5	4	5
TTGTTCCATAGGTTCC	alt_939_upstream	2	8	3	5	8	8	3	6	5	3
TTTACCCCTACTTGAA	alt_939_upstream	16	7	19	14	10	10	9	11	14	4
CCTGCTTAGTCATCTT	alt_939_upstream	8	4	5	12	8	5	10	10	6	10
TATCCGGCTTGTGAAT	alt_939_upstream	163	178	218	143	173	172	186	153	172	130
ATCATAGCAGCAGCAC	alt_939_upstream	6	11	7	5	2	1	6	10	5	7
GGATTGCGTTCGGCAC	alt_939_upstream	9	7	12	7	12	11	20	5	6	15
CTGCAAAAGGCTACAT	alt_939_upstream	9	8	12	6	4	4	7	3	18	8
TTCGGAAAGTATCCTG	alt_939_upstream	148	207	218	154	163	159	194	156	187	164
AAATATCATGGGGTTT	alt_939_upstream	4	5	8	4	1	3	9	6	1	6
TGGTGCTCATAGCTTC	alt_939_upstream	16	14	11	17	18	14	11	12	16	8
AACCGTATCGCGGGAC	alt_939_upstream	35	28	35	32	47	31	43	16	28	29
CGGGGATCATGTATGA	alt_939_upstream	15	19	25	11	11	26	25	23	23	34
GGTAATATTGCTAATA	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
TTTAGTTTGTGTTCCC	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTTCTAGAACAGT	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CACCTCACCAGCGGCT	alt_939_upstream	21	24	38	15	22	23	35	16	17	22
ATGCGAGTCTAAACTA	alt_939_upstream	24	13	9	9	17	12	20	19	8	12
CCAAGGTTTTTTATTC	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
AACCTCTTCATCGACG	alt_939_upstream	135	122	118	113	129	86	142	82	128	95
GGTAAATATTCAAGCA	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
TGGGTTTATGAACTTG	alt_939_upstream	53	68	79	47	51	36	74	45	65	33
AGTTGTTTCCTGTCAC	alt_939_upstream	42	53	54	52	39	41	47	45	35	33
CGATCCAGTCCATTGG	alt_939_upstream	24	27	27	19	25	27	23	30	27	24
TATGTCTCTTAACTCC	alt_939_upstream	5	4	7	5	8	6	3	6	3	6
AGGGTCCTTTTGTCCG	alt_939_upstream	10	13	14	9	16	12	17	15	14	11
CGTTTTTGGGGGGGCT	alt_939_upstream	9	6	19	8	9	17	1	4	14	10
CATATGGTTATGCTCC	alt_939_upstream	0	4	5	0	1	2	1	2	1	3
TGTATTCATTTGCGTG	alt_939_upstream	11	22	20	29	12	21	23	14	23	22
TTTAACTGCGTACTCT	alt_939_upstream	35	31	39	30	54	30	37	34	45	28
CCCGGGGCCTCCTTGT	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGATGCCTGCGGG	alt_939_upstream	16	25	26	28	20	11	14	11	18	20
TGATAGCGGGCGTGTA	alt_939_upstream	26	18	29	18	29	23	26	20	28	13
GCGGGGGTTCTTCTTA	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CACCAACACGTCTACG	alt_939_upstream	9	13	10	12	10	15	19	9	12	9
CCCAGCGGCCCGGTAA	alt_939_upstream	43	36	38	38	50	39	41	47	47	34
CGGTGGTCTTTTACCA	alt_939_upstream	14	9	20	17	15	10	18	12	20	10
GCGATAATCATACTCC	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CGTTTCGTTGGTAACG	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CCGAACGGGTTCGCCC	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGCGTTGCGAGGC	alt_939_upstream	8	6	6	5	4	7	2	4	6	13
AGGTTATGGAATTGTC	alt_939_upstream	47	40	62	41	35	51	29	42	43	37
GGTGACTAAACAGTCT	alt_939_upstream	13	14	19	9	15	15	13	14	18	12
GCCCTCCCTGCATGTT	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
TTCATCTAAGTGTGCC	alt_939_upstream	24	30	40	26	39	27	26	30	38	32
CAGTTTGAGTACATAA	alt_939_upstream	19	13	15	10	27	17	22	11	19	13
GCATTTTCCAGCTCTA	alt_939_upstream	46	38	55	53	53	45	43	54	46	60
TCTGCCGGGTAACACT	alt_939_upstream	145	118	162	149	106	109	140	133	126	120
AGGTCGGCCAGTCACC	alt_939_upstream	34	22	32	18	17	17	19	26	13	11
GTACGCCTGACCGTCC	alt_939_upstream	36	32	39	40	36	42	41	52	46	26
TCGGTCGTCTTGTGTT	alt_939_upstream	8	7	9	3	7	0	6	4	2	8
ATCACCTGCTTCTAAT	alt_939_upstream	56	73	89	85	70	59	89	70	82	73
TAACCTATGTTTTCTG	alt_939_upstream	18	33	31	27	36	24	23	18	38	24
ATACTGTCATCGTCAA	alt_939_upstream	71	61	94	48	63	71	49	62	64	59
ATACTTAGCTCAGTTA	alt_939_upstream	10	11	17	5	9	8	10	5	16	9
TACTCTTATCCTTGTT	alt_939_upstream	23	20	30	27	23	19	19	36	21	28
TCGTAGCGTCTTGAGG	alt_939_upstream	12	14	9	11	10	4	9	7	5	3
TAGGGCTGGAATTTCT	alt_939_upstream	62	43	56	61	43	61	49	45	77	62
GGCCGTATTTGGCCCT	alt_939_upstream	0	0	0	0	0	0	0	0	0	0
GAGCTAAAAGCAGATA	alt_939_upstream	75	67	78	50	53	65	64	57	66	41
CATGATGCTCTATCGA	alt_939_upstream	15	16	12	21	15	17	20	19	23	15
CCTCCTACATTGTTAA	alt_939_upstream	32	31	37	30	35	38	40	29	29	32
CTCGGCCGGAAATTGT	alt_939_upstream	8	12	17	9	15	8	13	11	18	6
TTGTACCTATTCCTCC	ref_2241_missing	43	45	58	47	42	62	66	42	56	40
ATATGGATATCATTAC	ref_2241_missing	47	56	71	75	45	43	58	52	60	52
CATGTTTACCCGTTTG	ref_2241_missing	25	20	20	14	20	17	21	32	24	24
GGTAGTTGCCTTTATC	ref_2241_missing	20	21	25	23	22	17	28	14	25	26
GCTTTGCCCTTCTGGC	ref_2241_missing	161	168	196	138	168	155	146	158	167	126
ACAGGACCACCGGAAT	ref_2241_missing	5	17	11	6	6	3	10	8	5	4
GTTCTCAGAGCCCATT	ref_2241_missing	66	47	46	57	54	53	59	57	68	48
CTCACAATGCTCCAAC	ref_2241_missing	5	3	3	2	8	4	5	1	5	3
TTGGATCACATCTCAT	ref_2241_missing	21	16	20	20	17	25	14	22	13	25
TTTGTACGAACGGTAA	ref_2241_missing	0	0	0	0	0	0	0	0	0	0
GTTTTTTCTTTGGCGC	ref_2241_missing	29	8	45	29	19	31	28	32	23	37
CCGTACATATTTTTAG	ref_2241_missing	21	9	10	8	11	15	21	11	14	13
CAACCATAAGCCCGGC	ref_2241_missing	0	0	0	0	0	0	0	0	0	0
CGATTCATGTTAGGAG	ref_2241_missing	16	10	15	16	13	10	13	15	8	15
GCGCCGGGCTATTCTT	ref_2241_missing	8	12	11	14	10	14	18	12	8	13
TGTGGTTCATAGTCGT	ref_2241_missing	29	24	22	21	15	21	17	16	17	20
AATTCAATGGTTCAAT	ref_2241_missing	0	0	0	0	0	0	0	0	0	0
CCCTGGTCTGTTTAAC	ref_2241_missing	17	33	30	20	38	17	53	17	44	17
CGATAAGGGCGCCGTC	ref_2241_missing	105	108	128	121	117	113	91	104	116	93
TGGTAGTCTTCAGTGT	ref_2241_missing	12	17	16	21	19	26	12	15	19	18
CTACAAAAGGTACCAC	ref_2241_missing	0	0	0	0	0	0	0	0	0	0
CCTAAGGATGGGTTTC	ref_2241_missing	0	0	0	0	0	0	0	0	0	0
CCTGGCATTCCGGGGC	ref_2241_missing	0	0	0	0	0	0	0	0	0	0
AGGCTCTGAGCATCTC	ref_2241_missing	92	90	135	84	73	111	92	92	102	117
TTTTTTTGGAAGGTCG	ref_2241_missing	42	44	52	48	28	35	23	32	25	23
TGTGAGCTTGCCGTGT	ref_2241_missing	13	11	16	9	8	9	8	13	13	10
ATTGGGGTAAACTTGC	ref_2241_missing	29	28	40	28	27	29	30	29	25	31
TGGCGAGAGTTACATA	ref_5784_new	12	23	20	5	12	10	13	6	21	11
TCTACTGGTCTGGCAA	ref_5784_new	3	3	4	1	6	5	3	1	4	2
TTCGCTCCATGTTCTC	ref_5784_new	9	18	14	10	23	6	14	10	16	10
AATGTGCGCTACGTTT	ref_5784_new	2	4	1	3	6	3	2	3	4	2
TGGGAAGTATCTTTAT	ref_5784_new	24	25	25	22	23	20	39	14	32	15
GGCTCCATTTTAAGTC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
AACTCATGTTGGTCAT	ref_5784_new	12	22	17	10	33	27	19	6	31	10
GGAATAAACTTAGTCT	ref_5784_new	7	2	3	5	5	8	9	2	4	2
GTGATGCAACCGATTT	ref_5784_new	15	23	23	19	30	14	36	17	33	21
TTCATTTGGCTCGTAT	ref_5784_new	28	48	34	26	50	27	61	22	59	30
TACTCCATGTATCCTA	ref_5784_new	12	14	13	5	20	10	14	12	14	12
GAGGGATTCCCTTATT	ref_5784_new	35	78	53	31	75	35	74	35	66	33
ATGACTTGGACAGCTC	ref_5784_new	7	20	15	15	28	14	26	6	26	12
AGGTGTACATTAAGGC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
AGGTGCAGTCCTCTCG	ref_5784_new	4	22	12	13	16	17	21	12	26	7
GAACTTAACCGAGTGA	ref_5784_new	34	52	31	25	61	25	45	21	59	25
GGATATGATATCGGTA	ref_5784_new	0	0	0	0	0	0	0	0	0	0
AGGTCTCCTGCAGCGC	ref_5784_new	34	49	41	25	69	30	51	37	54	38
CAATTCGGTCGCTTTG	ref_5784_new	17	61	39	22	45	27	63	18	69	26
CGGGCGGTCCATGGTT	ref_5784_new	31	52	38	20	72	37	45	19	54	28
GGTGGAGCGTTGTCAC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
GGACAAACATTTTCAA	ref_5784_new	8	1	5	2	2	8	4	4	10	1
TAAAGCTTCCCAGTCC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TTGTCATCAGTTATCC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TCCATTCACAACTTGT	ref_5784_new	0	0	0	0	0	0	0	0	0	0
GTCGCGCATCGCAATG	ref_5784_new	22	54	31	23	49	18	52	32	45	16
GTGAGAGTCTCGTGTG	ref_5784_new	0	0	0	0	0	0	0	0	0	0
CTTGGCGCATACATCT	ref_5784_new	12	29	8	11	31	15	20	13	36	9
TTTGTGCATCCGCTCG	ref_5784_new	0	0	0	0	0	0	0	0	0	0
GGACATCCCATCCACC	ref_5784_new	17	29	17	19	44	22	35	19	38	21
TTAAGGCTGTCTGGCA	ref_5784_new	78	137	73	62	117	72	135	57	139	46
GCTTTGTTACCATCTG	ref_5784_new	46	102	65	61	108	38	128	55	131	44
TCCACGCGCAACCGTT	ref_5784_new	18	23	11	17	27	16	42	20	33	7
TGAGCTCTTTATTAGG	ref_5784_new	0	0	0	0	0	0	0	0	0	0
ATTCCTAGGTTTGTTT	ref_5784_new	17	17	11	7	20	17	17	12	16	11
TCCTGTGGCTGCTATA	ref_5784_new	5	10	3	9	14	1	10	8	10	4
CTATTTATACGTCTTG	ref_5784_new	1	18	6	12	18	6	11	1	22	6
TCTGGTCTTCGATGCT	ref_5784_new	1	12	7	4	3	3	15	6	10	5
TTTATACTAGACTATT	ref_5784_new	8	38	24	14	31	13	34	22	32	14
CACGTATGTGAAATCT	ref_5784_new	34	49	38	39	42	32	52	39	52	19
TCAGAAGTATCGCCGC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
GGCTAACCTCAGTTAC	ref_5784_new	9	39	13	8	32	9	29	11	36	12
CCTACCCAATTGAGAA	ref_5784_new	7	39	2	3	20	2	34	3	19	3
GTGCTCCTAGGTGTCC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
ACCATTATTGGCAGAT	ref_5784_new	28	63	17	21	59	29	47	14	35	22
CGATCCGGGGTACACT	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TTTGGATACGTTCGAG	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TTATCTCCAACGGAGA	ref_5784_new	20	33	22	19	38	21	40	20	50	19
ATGGATTGCTACATAG	ref_5784_new	13	21	20	5	30	14	21	19	15	16
TCGTTCAGAGCACTCT	ref_5784_new	27	43	28	16	45	27	52	15	50	26
CCGCTGCGGGACGTAT	ref_5784_new	10	20	15	11	34	10	33	16	33	17
CCAGAGCCCTCGCTCG	ref_5784_new	0	0	0	0	0	0	0	0	0	0
ACCAACCTAGTAATTC	ref_5784_new	17	67	25	11	56	22	51	20	57	21
GCTTGTATTCTGGTTA	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TTTTTATTGGGCTATT	ref_5784_new	2	5	10	3	5	9	12	8	13	8
TAATTCATAAATTGGT	ref_5784_new	0	0	0	0	0	0	0	0	0	0
CCCTCATTGACTAGCT	ref_5784_new	5	12	3	3	7	7	6	4	5	4
GGTCTCTCTAAACGGC	ref_5784_new	6	16	2	7	17	3	16	3	15	3
TATCCAACGCTGCCCT	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TTGGAGGATCTGTTAG	ref_5784_new	12	30	17	10	8	14	28	8	27	13
GTGTCATGGTAGGGTC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
CCGTCTTGGAAACTTT	ref_5784_new	10	16	8	11	12	11	22	19	36	6
GTTATACAGGGCACCA	ref_5784_new	37	66	30	27	65	22	69	31	65	35
CTCTTGGAGAAACCAT	ref_5784_new	29	70	30	42	75	48	69	37	83	36
AACTACCTGTGCAGTT	ref_5784_new	26	36	21	20	39	18	40	17	47	15
CTAGCCGCTCGGATAC	ref_5784_new	0	10	7	12	19	11	12	2	21	7
TGTCACCCTTTATTTA	ref_5784_new	0	0	0	0	0	0	0	0	0	0
CTGGATTTGCCAATAA	ref_5784_new	14	8	9	7	15	8	18	7	5	13
TTACGCACCAACTGTG	ref_5784_new	17	40	26	25	51	27	62	9	73	20
CTTCCTTCCGCTTGTG	ref_5784_new	12	22	12	7	25	9	23	9	25	4
TTTCAACCTCATATGG	ref_5784_new	29	42	47	45	63	22	65	31	38	33
TAACCCAGCAACCCGG	ref_5784_new	0	0	0	0	0	0	0	0	0	0
AGCCGCCGTTTTAGAC	ref_5784_new	29	63	32	27	58	36	70	28	65	21
CCATTGCCTTGTTTTT	ref_5784_new	3	1	0	3	2	3	3	1	3	1
TTCCACACGCAGAGCG	ref_5784_new	15	25	12	18	27	14	28	19	29	9
TTATCCACCGGGTGTT	ref_5784_new	10	3	1	2	6	2	7	3	8	7
CTTGAGCATGGATATT	ref_5784_new	6	12	16	6	19	11	12	8	27	12
GATGCGCATCAACTCC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TTTACAATATCGTTTA	ref_5784_new	194	274	204	160	290	143	342	171	317	136
ACAAAGCGCAGGGAAA	ref_5784_new	0	0	0	0	0	0	0	0	0	0
AGAAATCTTCGTCTTA	ref_5784_new	18	23	27	11	25	12	18	10	23	11
AAGGATGGCCAATATC	ref_5784_new	18	20	21	3	37	22	25	16	32	10
TCCCTTCTTCAGTTAT	ref_5784_new	8	16	1	3	18	0	17	3	41	0
ACACATACGCTTCATG	ref_5784_new	3	9	0	1	3	2	4	4	6	3
GTGCCTACACCGTTCC	ref_5784_new	11	38	16	12	39	10	41	11	49	6
CAATTGCTGAGTTTCG	ref_5784_new	62	124	76	66	149	64	121	54	128	45
CGCGAGGTACTCTGCA	ref_5784_new	11	17	11	12	21	14	12	5	23	12
CACCATATGTCTATCC	ref_5784_new	19	18	12	18	16	15	26	8	25	13
TCTAGGAAGAGCTCTA	ref_5784_new	0	0	0	0	0	0	0	0	0	0
GTTAATTGGAGTTTCC	ref_5784_new	2	12	9	4	11	4	13	7	17	9
GTTGCGATCCCTAGAA	ref_5784_new	18	29	9	14	22	17	34	16	33	15
GTCTGGACTTCACCTT	ref_5784_new	28	53	33	31	68	30	64	16	76	30
TGAATCATACCCAAGG	ref_5784_new	0	0	0	0	0	0	0	0	0	0
TCGTATAGATGCTCAA	ref_5784_new	46	76	49	40	66	20	60	25	102	30
GGCGATGTCACATTAC	ref_5784_new	124	172	122	125	195	98	181	106	200	106
GACTTCATAGCCACAG	ref_5784_new	31	33	36	31	40	27	53	23	42	27
ATTCTTCAGGACAGGG	ref_5784_new	29	61	32	31	64	17	41	34	64	15
CAGTTATTGTTTCATA	ref_5784_new	0	0	0	0	0	0	0	0	0	0
GCGAATATAGTAGCGC	ref_5784_new	0	0	0	0	0	0	0	0	0	0
GATATACCTAATTCGG	alt_2091_negative	26	28	34	20	30	24	32	19	34	25
TTGCACTTTCCGAGAC	alt_2091_negative	50	76	76	65	94	57	82	55	75	55
CAATCGCTTGCATACA	alt_2091_negative	8	5	8	11	8	9	13	2	6	4
AACTAGAATGCATGAA	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
GGGGCAATTACCCACA	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
TGCCCGCCAACATGCT	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
TTTGGGTTACACCATG	alt_2091_negative	42	51	37	37	45	34	44	30	68	27
GGTCGGAGATGTTTTC	alt_2091_negative	12	14	22	11	16	27	18	21	33	18
CTAAGTTCGGGCTTTG	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
CACTGGATCGGTGTGG	alt_2091_negative	118	141	140	102	154	109	126	91	139	92
TGCGTCATCTTAGGCT	alt_2091_negative	60	87	107	68	94	59	98	67	96	60
TTCCACAATCGTAACC	alt_2091_negative	43	65	67	49	79	33	57	55	73	51
CGCAAAGTACTTTTTG	alt_2091_negative	22	19	11	18	18	11	9	13	15	11
AGTTTGCATAGCCTTC	alt_2091_negative	6	16	18	14	19	15	16	8	13	6
CACGGTGTTGTGGTTG	alt_2091_negative	1	1	5	5	2	1	3	2	4	2
ACGCGTTTTTTACTCT	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
CCTTCGTGTTCCCAGT	alt_2091_negative	65	53	40	44	63	39	57	57	64	42
CCAGTGCCAGGTATTG	alt_2091_negative	3	6	4	5	4	7	11	5	13	8
GTCGGCCAACTCAGTC	alt_2091_negative	14	19	17	22	19	18	19	16	29	20
CCTGGTTATCTAGGTG	alt_2091_negative	22	41	24	16	34	19	29	32	41	7
GCTTATGGATCGCATC	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
TTAACCTGTTACCAGG	alt_2091_negative	6	10	2	5	8	6	7	2	13	4
CTAAAACACTAGCTGG	alt_2091_negative	18	14	13	15	13	20	8	13	13	10
TCAGGCTCCGACATGT	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
CGTTATTGTGTTAAGT	alt_2091_negative	53	84	80	57	83	62	71	60	84	66
CAGGCCTTTCTATCTT	alt_2091_negative	1	7	5	4	3	3	4	5	5	2
CCAAACTCTGTTTGCC	alt_2091_negative	3	23	3	8	33	4	33	7	31	1
TGTGAGCGGGATTAAT	alt_2091_negative	88	101	103	87	92	79	114	69	113	76
CTTCCGAGCCATCGCG	alt_2091_negative	44	37	34	25	32	20	28	31	42	23
GCCAGGTATTATTCTA	alt_2091_negative	18	35	29	35	34	29	52	25	48	24
CTCAACGTCACTCCAA	alt_2091_negative	0	0	0	0	0	0	0	0	0	0
TTGCTGGAGTGAGGTG	alt_5807_new	0	0	0	0	0	0	0	0	0	0
TATGTGTTACCCAACC	alt_5807_new	18	18	17	15	18	11	23	12	14	12
CGATGGAGTTATTTCA	alt_5807_new	0	0	0	0	0	0	0	0	0	0
AAGCTCGCCACCCCCA	alt_5807_new	1	3	4	1	9	5	3	7	9	4
GCATTGAGTAGCCCCA	alt_5807_new	41	59	63	53	41	54	59	49	51	49
AGTATGGCGCGTCGGT	alt_5807_new	90	72	104	97	74	100	97	81	96	68
TCATGGGGCCAGCCTC	alt_5807_new	36	33	33	20	36	35	29	13	28	23
CATACGCTATCATGTA	alt_5807_new	35	51	44	46	38	39	49	37	64	26
CTTACTCCCCGTCCCC	alt_5807_new	0	1	0	0	0	0	0	0	0	0
ACCCCCGATGGATTCT	alt_5807_new	0	0	0	0	0	0	0	0	0	0
AGTTCCAGGAATGTTT	alt_5807_new	53	70	67	43	76	72	76	48	89	45
TTACATCACGCTTTGT	alt_5807_new	50	38	43	57	63	42	37	52	39	49
ATGTTCAGCTGATATC	alt_5807_new	14	12	13	16	21	10	14	9	21	16
TACTGCTCCCCACTAT	alt_5807_new	2	3	3	1	2	3	1	2	3	0
CTAGTAGTGATCAGGT	alt_5807_new	49	67	46	51	76	48	90	48	85	52
GAGTGTACGAGACACG	alt_5807_new	4	9	7	2	4	4	13	10	7	4
AAGGTGTCTATAGGAG	alt_5807_new	2	0	1	0	0	1	0	2	0	0
CCGCATTGTGGAGAAA	alt_5807_new	7	10	5	11	18	5	20	11	16	3
CATTGTTAAGAGTTTC	alt_5807_new	5	5	9	8	9	6	15	10	8	3
CGGCAGGCGTAGTTGT	alt_5807_new	170	190	184	200	182	177	186	151	197	159
GGACTTATTGTAAGCG	alt_5807_new	3	5	8	7	1	9	8	2	4	7
CCGTATGAGACATTAG	alt_5807_new	7	6	9	9	2	5	8	2	6	6
CAGGCATTGTTGGATT	alt_5807_new	7	7	10	7	11	7	7	11	14	6
TCTTGATAATCTTTCT	alt_5807_new	13	19	19	18	27	10	16	9	25	24
TCTTGGCTTATATTCG	alt_5807_new	39	53	62	37	57	58	58	44	57	48
TGTAACTTGCCACTCT	alt_5807_new	169	209	212	163	204	165	197	151	204	138
CCGTATAGGTTCGCTT	alt_5807_new	1	3	0	0	6	2	9	3	7	2
AGGGTGATTGCTGCCA	alt_5807_new	2	11	4	0	12	4	12	1	12	2
TGCTAACGTCCTTCCA	alt_5807_new	10	9	5	7	11	2	16	3	7	4
TCGGCCCGTTGCAAGG	alt_5807_new	32	39	32	33	48	23	45	29	43	26
TTGTATCGAAGTACTA	alt_5807_new	28	23	26	21	17	22	24	16	22	19
CCTTTCGTTGCCATTA	alt_5807_new	5	7	4	7	11	4	5	7	6	4
ATGGCGAATATCTCAT	alt_5807_new	23	20	46	24	28	30	20	14	22	22
ATTTTCTCTGTTGCTG	alt_5807_new	17	8	23	13	12	20	10	17	23	25
TGGCCATCGTGACGCT	alt_5807_new	11	17	20	10	18	10	26	26	22	14
CAGGTTCTATTTTAAT	alt_5807_new	0	0	0	0	0	0	0	0	0	0
CCCATATTCTAAATCC	alt_5807_new	91	95	124	122	96	110	128	109	126	104
AACATGCCCGTAGTGT	alt_5807_new	18	22	24	17	21	18	19	19	22	22
GGAATTAATACACTCG	alt_5807_new	0	0	0	0	0	0	0	0	0	0
TTCTTGCATGGATATA	alt_5807_new	194	238	181	183	248	180	239	167	260	131
AAGGTATCCTACGCAC	alt_5807_new	10	5	16	12	9	10	10	3	8	11
GTCAAGCGTTCTCCAA	alt_5807_new	57	61	65	58	91	66	76	54	68	66
GCCGTAGCGCATTCAT	alt_5807_new	32	55	38	36	47	34	43	44	50	35
AACATCCTGCTTTTGG	alt_5807_new	33	37	24	22	36	33	25	34	43	18
CAACGAACTAAGCTGT	alt_5807_new	29	29	42	35	38	25	36	24	42	31
CTTCTATGTTATGCAC	alt_5807_new	3	3	0	1	1	3	3	2	3	2
GTATTGGGGTACGAGG	alt_5807_new	5	4	12	4	2	6	3	7	6	5
CGATGGGGCATGGAGT	alt_5807_new	21	18	18	10	13	19	19	15	15	15
GTGTAAGTCACGTAAT	alt_5807_new	30	24	25	14	16	29	25	18	32	17
AAGCTCTATCATGTAT	alt_5807_new	152	203	190	168	222	152	184	159	221	177
GGACGGCCAGGGTTGG	alt_5807_new	169	150	243	170	202	178	227	190	202	171
TACTACGTTGGTTTAC	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
CCCAGCACTGACTACC	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
TGATCGGCACGCAGTT	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
TGTGCCCGGACTCGGT	ref_1368_missing	45	53	57	39	56	33	58	47	57	45
CTTTGCCTATGTTTTT	ref_1368_missing	16	34	21	17	30	22	22	8	22	10
ATTTAGTTCGTTGCTA	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
TTTATACCCTGGTATA	ref_1368_missing	4	8	12	7	12	6	12	4	16	8
AGCACGTCAACTTACT	ref_1368_missing	19	35	20	21	37	21	26	22	41	14
ATTAGATTATGGGGCC	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
TAGATCGTTGCTAAGT	ref_1368_missing	3	6	2	5	7	5	8	6	10	1
AGAAACGTGCGGCCGT	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
TTAGCATCCCCGCCCT	ref_1368_missing	4	5	5	6	4	1	1	3	7	0
GAGTATGGGGCGCTTC	ref_1368_missing	17	21	27	20	33	21	28	29	35	25
CTCCAGGACTCGCTCG	ref_1368_missing	3	5	6	7	0	4	4	1	7	0
CGGTCATATGCCAGGA	ref_1368_missing	34	61	45	32	63	34	66	45	82	34
AATGATTCTTTATGCC	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
TTATGTATATTTTCCC	ref_1368_missing	6	45	6	12	55	5	46	6	67	9
CGCCGAGCCGTCTATA	ref_1368_missing	19	36	26	19	38	11	39	16	44	19
CATAGGGTGAAGGCAT	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
CTCCGTGTCGTCCTAT	ref_1368_missing	24	44	26	26	52	24	43	26	40	36
TTACTTTGAGAGTCTA	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
CTGTAAAGCCGACCCC	ref_1368_missing	28	44	46	35	48	32	36	28	60	26
TGTTTTATAAATGTCG	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
CACTCTCCTATATGCC	ref_1368_missing	0	2	3	1	9	0	9	0	5	1
TAGCTGCTTAGGTTTC	ref_1368_missing	40	35	60	42	56	35	48	30	39	31
CGAATTTAGGGGTGTT	ref_1368_missing	28	22	28	20	19	20	31	11	36	7
GTGTTGTGCTTGGTCA	ref_1368_missing	0	0	0	0	0	0	0	0	0	0
GCCATCGCGAGTTTCG	ref_1368_missing	4	5	3	2	1	0	4	2	10	1
CCTCGGCACAAACCGA	ref_1368_missing	10	13	3	13	9	11	8	5	13	6
AGCCATCGCACATCAC	ref_1368_missing	31	53	42	29	56	33	70	34	60	35
TGTTCGTTCACCAAAG	ref_2099_upstream	0	0	0	0	0	0	0	0	0	0
GACGGGTTCTAACCGT	ref_2099_upstream	15	17	13	8	23	6	24	6	15	11
TAAATCGCTACTTTTG	ref_2099_upstream	24	21	25	29	29	29	31	24	28	31
CATTTTTGTAAACACA	ref_2099_upstream	117	101	112	94	73	103	67	91	57	88
TGCAAAATTTGCATTA	ref_2099_upstream	121	116	138	122	111	94	126	124	104	131
TTCTGTAAACATAGGC	ref_2099_upstream	89	73	126	96	84	90	74	83	57	92
GCCACACTCGTTAACA	ref_2099_upstream	18	28	29	21	34	32	25	17	26	27
GGGCCTGATTCCACTC	ref_2099_upstream	0	0	0	0	0	0	0	0	0	0
TCGTAAGTTCCATAGT	ref_2099_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGCTTAACCTTTT	ref_2099_upstream	77	66	83	85	63	71	70	90	57	46
ACAATTATATTTCGGA	alt_2099_upstream	201	133	201	173	137	169	163	176	164	176
CTAGGTTTCGGATATC	ref_2099_upstream	15	10	22	17	19	10	12	11	15	11
TATTGTCTTCGGACCC	ref_2099_upstream	19	25	30	30	15	21	23	23	12	29
CACATCCATTATCTGT	ref_2099_upstream	206	206	207	163	173	163	183	206	177	190
CGTTCCGAGCACGTAT	ref_2099_upstream	11	7	19	8	10	12	15	16	10	12
TATTGTATCGAACTCT	ref_2099_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTTCCGGTTCGCT	ref_2099_upstream	28	12	18	20	22	19	19	12	17	22
GATACTGTTTTATCAT	ref_2099_upstream	0	0	0	0	0	0	0	0	0	0
ATGGCAACCTATCGAG	ref_2099_upstream	0	0	0	0	0	0	0	0	0	0
TACCGTGATGATTGTG	ref_2099_upstream	0	0	0	0	0	0	0	0	0	0
CTCTATGGCTGTGGAG	ref_2099_upstream	45	53	63	57	52	45	39	54	54	39
TCTACTCAAGTGATGT	ref_3665_RC	64	124	89	66	151	49	138	59	117	63
TGAGCCGTTGATGTCC	ref_3665_RC	29	41	46	45	50	25	51	26	70	39
AGAGGGTAACAGAGTA	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
TTCTACGTCTGTTCGC	ref_3665_RC	3	5	5	2	3	4	4	3	3	0
CCCACCACTGGTCGCT	ref_3665_RC	11	12	12	13	22	19	27	14	26	12
GTGGTAATTCCCCTAA	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
CGAAATTACGGTCCAG	ref_3665_RC	19	26	11	11	28	11	32	17	34	8
TGGCAGGATCAACCGG	ref_3665_RC	73	82	81	64	79	57	78	54	90	48
CAACAATACCCCCTAT	ref_3665_RC	23	34	24	13	28	17	37	18	50	19
TTGTAGCAACCATGGG	ref_3665_RC	10	18	16	4	20	7	20	10	19	6
TTTGCGGCATCTTTTC	ref_3665_RC	82	141	110	71	130	75	123	81	150	72
TATGTGGCGGTGAGTA	ref_3665_RC	19	25	32	22	33	23	28	17	13	12
CTGAGTGGTGGTCGCG	ref_3665_RC	11	13	10	18	15	11	14	11	19	5
TGGGCGGATATCCGGC	ref_3665_RC	38	59	41	23	38	32	53	25	60	30
CATCAAAGGACATATT	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
TTTTCTCTTCGCCGTT	ref_3665_RC	0	3	3	6	0	0	4	4	1	0
GTGCGCCAATATTGCC	ref_3665_RC	41	78	41	45	65	37	87	25	66	36
TAGTCAGGATCCACAC	ref_3665_RC	33	46	47	17	42	11	43	17	38	14
CCTCCCCTCTTTTTAT	ref_3665_RC	3	27	7	8	35	7	19	7	24	3
CCTCAGAGGTTATTCT	ref_3665_RC	45	60	43	42	45	33	57	37	65	28
CTCTGGATCATACATT	ref_3665_RC	6	20	12	7	26	5	31	11	14	6
CCGTAAGGCGCGACTT	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
ACTCAAACTCGCTGCT	ref_3665_RC	34	41	29	23	46	20	33	23	37	18
TTCGGTGTCACTTTGA	ref_3665_RC	12	20	9	9	20	7	9	3	27	8
CCGGGTCGCACATGTT	ref_3665_RC	2	16	2	7	17	3	13	9	21	3
GTTATTAGGCATGGCA	ref_3665_RC	11	29	10	9	14	6	20	5	17	5
CTCGGTTACTGCCCCA	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
ACATCGCTGCCGGCAA	ref_3665_RC	31	29	28	31	34	12	37	25	30	26
CTTCAGGGCGCTAGGA	ref_3665_RC	20	33	28	29	36	21	44	26	20	12
GTCGTGACCATCGTTG	ref_3665_RC	26	48	46	30	48	20	54	20	53	19
TACTACCTTGGTAAGG	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
CTAATCCTGCTACGAT	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
CGTTCCGTGCGCCGCT	ref_3665_RC	28	39	23	30	45	42	43	32	58	25
CAAAATCGATGTCCTA	ref_3665_RC	76	115	86	60	128	56	135	77	118	44
CGGCTGATAATTTAAG	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
ATTCGCAGCTTAATCC	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
TACACTGCATCGCTTT	ref_3665_RC	3	9	14	5	15	5	19	7	19	8
GCCACTCTGGTTTATG	ref_3665_RC	5	13	10	5	14	7	11	3	6	1
TGATCAATCTTTTACT	ref_3665_RC	8	13	13	13	16	12	16	9	22	9
TTTCCTGTTAATGCGT	ref_3665_RC	51	100	82	51	91	48	71	46	91	52
CGTATGATGATTTCAA	ref_3665_RC	11	22	15	18	16	12	15	11	18	10
AAATACCAAATTTTAG	ref_3665_RC	49	43	23	32	46	38	51	30	43	39
TTTCCCTTCCGGGGTA	ref_3665_RC	22	32	42	23	40	22	39	26	36	28
TCCGTGTCCAGACCGT	ref_3665_RC	16	29	30	14	30	12	24	26	30	22
TACATACTGGACGGTA	ref_3665_RC	21	27	11	10	26	11	29	15	28	15
ACTGCCACATCCTTTT	ref_3665_RC	25	53	32	20	51	33	57	19	72	16
AGTGCCCCAGATTGTC	ref_3665_RC	12	23	16	9	10	11	15	4	14	15
ATAGGAGCCAGATTAC	ref_3665_RC	31	35	25	24	46	29	48	34	44	30
AGACTCTCCGGATGTT	ref_3665_RC	15	54	35	21	54	23	53	24	46	19
TGCGCGGTATCTTGTA	ref_3665_RC	39	82	59	39	78	31	96	39	68	45
TGAAAATCAATTCCTC	ref_3665_RC	1	7	7	2	8	4	7	4	5	3
CCAGGAATCTGGTCTG	ref_3665_RC	8	18	11	7	23	8	19	11	12	7
GGTTACATGTCTAAGC	ref_3665_RC	86	119	105	90	116	62	147	64	138	74
GTTCAGATGTAATCTT	ref_3665_RC	5	10	4	5	5	4	19	6	11	1
GTTATATTTGAATGCC	ref_3665_RC	36	38	27	13	44	32	34	41	37	25
GTTTGAGGTGACGCTC	ref_3665_RC	48	84	68	42	59	46	84	62	78	50
CATAGTCTCTAATTTG	ref_3665_RC	4	2	5	2	6	0	5	2	8	3
GTCACGTTGCGTTTAC	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
CTTGTGACGCTGTGTG	ref_3665_RC	11	22	23	13	15	8	25	11	29	13
TCCCATTGATCGATAG	ref_3665_RC	5	6	1	3	5	0	4	1	4	4
CAGTATATAAGGAGCT	ref_3665_RC	3	4	1	3	3	1	2	3	6	1
CCTCAACGAATATTTC	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
GCTTTCATTGCTCTCA	ref_3665_RC	1	3	2	0	0	0	6	0	2	1
CATCATGTTTTTTGCG	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
AACCAGGTTGCACTAA	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
GGACGTGATACCAGCG	ref_3665_RC	14	18	19	21	17	16	22	17	28	15
GTACTGTTTCACGCTC	ref_3665_RC	49	78	59	51	79	46	92	61	87	51
GTTCGGGCTGGGTATC	ref_3665_RC	7	13	9	8	8	8	16	9	13	4
TCCGCGCGGTGCTCAT	ref_3665_RC	17	27	17	15	20	15	20	13	24	9
TGTCTGAATCTTGTAT	ref_3665_RC	43	76	54	46	64	44	80	42	66	33
TGACTGGGGGTCTTTC	ref_3665_RC	10	22	21	13	23	13	13	13	29	19
TTTACTATCTTTGCTC	ref_3665_RC	27	46	37	28	58	27	37	24	45	37
CATAATATTTACTGGA	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
ATGTATCTTGATTCGT	ref_3665_RC	0	0	0	0	0	0	0	0	0	0
TACAATCCGGTCAAGA	ref_3665_RC	7	12	15	11	11	12	28	14	22	5
CACATACATGCGTGGT	ref_1787_fdr	0	0	0	0	0	0	0	0	0	0
GTTGACTTTAAGGGCT	ref_1787_fdr	179	97	258	231	93	219	77	213	102	172
CGAGTAGGATCTTCTC	ref_1787_fdr	132	47	144	161	63	140	54	138	57	141
CGCAATTCCCGTCTGG	ref_1787_fdr	361	158	352	353	200	301	196	272	196	284
TACCTCCTCTACAAAG	ref_1787_fdr	214	160	297	305	167	197	178	235	157	231
CGGGCAACCCTGCTCG	ref_1787_fdr	5	3	8	10	4	10	1	3	1	7
TGTACAAAACATCAAT	ref_1787_fdr	61	30	94	72	27	63	31	64	31	69
CAACATTCGGAATACA	ref_1787_fdr	112	47	157	142	54	113	53	106	50	118
CGAATAAATGTGATTT	ref_1787_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAGCGGTAATCGG	ref_1787_fdr	0	0	0	0	0	0	0	0	0	0
GATTTTCTTACCTAGG	ref_1787_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGCTAGCCTATGG	ref_1787_fdr	7	4	16	18	4	13	4	5	5	10
TCCGTCCGCGTAGTGC	ref_1787_fdr	53	21	74	59	23	33	11	53	23	48
TTCTGGCTCCTTGGGA	ref_1787_fdr	0	0	0	0	0	0	0	0	0	0
TACCTACCGAAGTTAT	ref_1787_fdr	88	55	103	95	45	86	50	80	44	74
GCGACAATGCTTTTCG	ref_1787_fdr	163	61	165	166	65	139	73	150	67	141
GAGCAGTTCGGCCGTG	ref_1787_fdr	30	12	59	26	5	30	11	28	8	41
CTTTCGCTTACGAGAT	ref_1787_fdr	378	153	474	440	158	351	180	353	177	360
TCCCACACATTTGAAG	ref_1787_fdr	8	6	8	8	5	9	1	10	1	11
AAAACTGGGGCGCGAC	ref_1787_fdr	293	114	443	389	119	307	143	316	129	304
TCATGTACTGTAGTAC	ref_1787_fdr	0	0	0	0	0	0	0	0	0	0
CTAACTCCTCTGCTTG	ref_1787_fdr	102	54	85	71	42	86	60	64	40	58
AATTCGTTGGAGGTAG	ref_1787_fdr	29	14	42	22	6	23	9	18	6	18
GGCTCGGTCCCACATG	ref_1787_fdr	105	39	92	76	27	95	39	85	34	76
GGGTTTGCTGGCTTAC	ref_1787_fdr	44	17	66	39	19	45	16	59	27	42
CAGTGGAAACGCGCCG	ref_1787_fdr	26	7	40	41	18	35	10	35	19	28
TTTCTCCCATTTTTGG	ref_1787_fdr	84	41	78	82	62	82	40	83	34	78
GGCGTTAGGTCTGGGG	ref_1787_fdr	231	70	284	224	77	236	98	214	104	214
ATCCGTCACGGGTAAA	ref_1787_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTAAGCAATCTTG	ref_1787_fdr	16	4	25	10	3	17	6	22	7	10
CATTTGAGGTTCTGTT	alt_3554_reverse	33	41	48	42	36	27	46	25	31	34
AGATCCTCACAGCTTT	alt_3554_reverse	33	40	35	24	32	32	45	28	37	23
TCTAGTAGATCATGAC	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
GAGGTTCCCCATGATT	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
TGTCACATTCTAGGGC	alt_3554_reverse	49	36	44	23	37	32	44	27	39	32
ATAAAGATGATATCTT	alt_3554_reverse	6	5	7	10	8	2	5	11	4	3
CTTTTTGATACACCAA	alt_3554_reverse	10	10	20	13	18	10	13	12	16	10
TTTGGGAAGCACAATT	alt_3554_reverse	66	81	104	77	79	51	89	75	115	62
CAGAGGTTATTGCGGA	alt_3554_reverse	0	0	2	3	3	4	6	3	7	8
GCAGGACATTGTGCTG	alt_3554_reverse	32	22	25	25	39	39	55	24	57	23
TTTTTCTAGGACTGGG	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
TGTGATCGTTCTCCGA	alt_3554_reverse	6	10	7	1	2	5	8	6	7	7
ATTACTTGTTACCTGA	alt_3554_reverse	26	20	49	32	40	33	32	25	36	17
CAGCTAGCTCAGAACG	alt_3554_reverse	18	41	24	17	56	27	41	9	48	22
GCCTGTAGCGTACAAA	alt_3554_reverse	8	14	14	7	19	8	20	12	14	11
TCTATCGTACTTGTAT	alt_3554_reverse	67	76	66	58	66	61	76	57	67	58
GTGTATGGCTTTTATA	alt_3554_reverse	6	9	5	7	8	4	2	5	5	5
GTCCCGGTGCTATTCG	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
GGTCCTAGTGGCTGTG	alt_3554_reverse	92	130	115	94	122	75	105	73	136	83
CATTCTACCCATGCTG	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
GGGCACGTTCATTGGC	alt_3554_reverse	48	45	44	56	53	43	52	47	40	45
CTGGCATATCTTGTGT	alt_3554_reverse	159	204	185	139	201	148	198	155	242	116
GAGTACAATTATGCCT	alt_3554_reverse	32	20	18	32	22	17	17	23	25	21
CTTAGACACCTGTTCG	alt_3554_reverse	22	26	18	14	28	17	28	11	33	17
ACAACTTAATTGTTAC	alt_3554_reverse	20	24	13	10	27	16	24	20	20	28
ACTAATCGTTAGCTTT	alt_3554_reverse	77	84	86	62	106	74	77	93	100	76
GAAGCAGGAACACTCG	alt_3554_reverse	6	8	20	15	11	7	18	17	11	16
CATGCTATTTCCCAGG	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
GATACTTTGGGCTGGC	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
CCTTGATCCGGTCTTA	alt_3554_reverse	13	19	18	13	29	19	17	13	23	26
CCCAGACGTCATAGGG	alt_3554_reverse	114	124	129	102	109	116	107	101	129	78
CAAACGACGACTCAGG	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
AAAACGGTATGCCTTT	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGCTCAACTTCGA	alt_3554_reverse	19	11	19	16	13	16	24	14	29	7
CCGAGTACCATAATGC	alt_3554_reverse	49	131	60	47	125	34	129	34	170	40
CATGGGAATATGGTAT	alt_3554_reverse	90	81	96	66	65	82	96	76	96	63
CTATGATTATCAATGC	alt_3554_reverse	83	97	103	81	83	75	104	78	95	81
TCACTCGTCTGGGTGG	alt_3554_reverse	11	10	8	13	12	12	15	6	19	13
ACCTTGGAGATCTGCG	alt_3554_reverse	57	49	31	47	45	37	49	33	63	53
AATTTATATATGTTTC	alt_3554_reverse	8	3	6	2	4	5	10	5	4	9
TCTAGAATCCGCCTCG	alt_3554_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGGTGGCTCACTA	alt_3554_reverse	4	8	10	9	6	10	8	10	3	4
ACACTTGTTTTTATGC	alt_3554_reverse	0	1	2	1	1	2	2	3	1	2
GTGCGTCGTTATCCCG	alt_3554_reverse	43	52	47	45	65	43	54	34	53	46
CCCTTCCAGTCCATAG	alt_3554_reverse	7	18	8	5	15	4	23	4	19	7
TTTGGGTGTGAATTTA	alt_3554_reverse	64	81	69	75	60	45	86	48	89	67
CCCCTGCTTGTCTAGG	alt_3554_reverse	26	48	73	52	44	54	50	48	60	39
GGTACTTTTTCCTTCT	alt_3554_reverse	21	31	33	19	34	25	25	17	26	15
GCCTAAGGTCCGTGTT	alt_3554_reverse	21	29	36	10	37	22	36	19	36	11
CTCCCTAGAAATTAGA	alt_3554_reverse	77	135	135	113	175	101	144	106	125	117
CTTGTCGCTGATAGCC	alt_3554_reverse	0	12	6	5	12	13	10	9	12	7
TGAAAAAATTTCCCTA	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
TCACGCCGGCAAGTTA	alt_2582_RC	8	10	14	8	9	15	12	6	10	9
TTACTCGGATACGAAT	alt_2582_RC	4	1	3	4	3	4	2	2	6	2
GGAATAACTGTCAGTC	alt_2582_RC	22	49	48	41	59	26	57	31	61	26
GATGCTTCGTTAACCT	alt_2582_RC	2	3	4	2	9	3	8	4	3	2
TGTATAAAGAAAAATT	alt_2582_RC	42	75	38	39	72	38	64	36	63	40
TCCCGTAGGAACCGCT	alt_2582_RC	24	32	19	25	22	22	26	19	27	18
ATATAAATTACCTCTT	alt_2582_RC	8	29	5	6	20	11	10	7	24	4
ACTCTCGAATCGCGAA	alt_2582_RC	14	22	19	17	28	19	13	11	17	13
TTCCCTGACTCGTTTA	alt_2582_RC	6	11	14	9	14	6	10	12	11	16
CCAGTCCTTGAGTTTC	alt_2582_RC	10	70	22	14	75	9	65	12	56	9
TCTAGTTTACTCGCCG	alt_2582_RC	21	52	34	25	55	21	47	30	50	19
TGCGGCTTTTTTAGGC	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
GGAGGTTTCTACAGTA	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
GTCGGTCCAGTGTTTT	alt_2582_RC	7	14	6	3	8	1	8	8	12	7
TCTATTCCGGACCGCC	alt_2582_RC	7	7	4	7	12	0	5	8	8	6
TTTTATTCTCGCATTG	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
TACGTTTGTTTTCGTT	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
TCGAGTACGCGAGCAC	alt_2582_RC	12	14	17	14	16	13	12	10	14	9
CCGTTACTGCTTTCTT	alt_2582_RC	21	51	34	21	41	15	73	14	58	25
TGTCCACGACGCCGTG	alt_2582_RC	111	178	144	103	180	81	166	84	191	81
TACCCGGTAGTTTTTG	alt_2582_RC	26	35	24	16	33	32	51	19	44	30
TTTGCGAACTCTAAGT	alt_2582_RC	8	25	13	9	33	10	23	15	27	11
TCTACGCATTTCTTTG	alt_2582_RC	22	30	20	10	18	18	29	12	17	17
CATCCTCATGGGACAC	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
CGCACGGAGCCCTTTA	alt_2582_RC	44	75	41	47	64	41	66	40	71	42
TTCTAGAGTCATCTAT	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
TGATTCTCCTGATTGC	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
GCTTCAACATGTTTGT	alt_2582_RC	142	225	183	152	232	128	234	122	211	131
TTAGCATTCGCCTACA	alt_2582_RC	24	72	36	38	65	30	74	37	67	28
GGTTAATCGGTTAGGC	alt_2582_RC	56	125	63	50	97	36	79	45	105	46
CACCGGCTTCGGTTTG	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
GTCATCTAGCTTTTGT	alt_2582_RC	15	24	24	28	34	23	34	20	34	19
TCACCTGGTACGCAGA	alt_2582_RC	5	23	10	6	28	4	22	11	34	13
ATTCCTCTGTCTGGTA	alt_2582_RC	82	75	82	63	122	68	94	81	110	67
CACGAAAATAGTCACG	alt_2582_RC	25	52	34	26	48	20	53	33	37	24
TGCAAAACGATGAGGG	alt_2582_RC	1	2	3	0	1	1	3	0	4	0
TCTTTATTCTATCAGC	alt_2582_RC	35	46	21	20	41	26	51	27	40	17
AGTCAAGTTAAGGCAG	alt_2582_RC	0	0	0	0	0	0	0	0	0	0
TGAGTCCGGCGATTCG	alt_2582_RC	3	0	3	1	0	0	5	3	2	1
AGCCTCGATCGTACCT	alt_2582_RC	73	125	64	71	135	69	87	59	129	55
GTAATACCTTATCACT	alt_2582_RC	18	17	12	11	20	15	22	10	35	9
CGAGGTTCTCGGTGAC	alt_3676_missing	11	18	14	9	17	13	18	8	25	11
TTCTTACGCACTGCAT	alt_3676_missing	2	2	1	5	2	1	2	5	2	4
GGGTTTCTGTATGTCC	alt_3676_missing	13	13	7	6	7	3	10	5	9	2
TTATTTGATTTTGAGG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CCTGGCTCTTTAGACC	alt_3676_missing	9	12	14	9	26	6	26	12	28	5
TCTGCTCTCAAGACCA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CCTTAATTCGTCTTCA	alt_3676_missing	12	33	14	9	27	8	25	15	21	9
AGGTTACGACCCGCTC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CTGGATAGCTGGTAGC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
ATTACGAGTGCGATTG	alt_3676_missing	15	26	22	13	22	18	37	19	47	19
GGCGGTTCCCTATGTT	alt_3676_missing	9	9	11	9	14	5	15	10	3	6
TTAAATCATGATGGGT	alt_3676_missing	0	7	0	4	7	3	6	3	6	5
GAGAACCAAACCTCGA	alt_3676_missing	17	18	18	13	24	21	23	17	29	8
TGTCCGTTCTGGCTCG	ref_3676_missing	28	39	36	16	25	19	34	15	39	32
CTGTACTAACCTTTCT	alt_3676_missing	6	16	10	7	18	4	11	6	8	11
ACTTGGCCGATTTCGC	alt_3676_missing	18	20	15	16	29	23	23	17	17	14
CAGTCTTGACCGTTTT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CTGAGAACACAATAAG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
ACTGTATAGCTGAACA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TCGACGTAGTCGTGCT	alt_3676_missing	1	0	1	0	1	2	4	1	4	1
CGGGCCTAAATCACTT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TACACGAAGACAATAT	ref_3676_missing	24	44	37	23	38	23	50	22	44	15
TGTCGCTTACGGGCTT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TCTATGAGAGAAGTTT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTCGCATCCTGC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CTACTTTGATTAGTGC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TCGTGTACAACGTACT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCTCACAGAATA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CATGCGGTTTGAAGCC	alt_3676_missing	7	8	5	1	5	5	2	3	8	1
GGTGTTTTCCTCTGGC	alt_3676_missing	41	58	46	46	58	46	67	43	80	29
TACGCCGATTCCTCGC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TTCTGTGAAAAGCAAC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CTCTGATGAATGTTAT	alt_3676_missing	3	3	3	1	5	8	3	0	2	7
TATGCCACTCTGGGCA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CCTGTTCTTACGCCAT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CAATTTGTGCTCGCGG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CTATCAAACTATTCTA	ref_3676_missing	26	49	38	27	45	25	62	26	50	19
CATCGTCATGATTGGC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CCAGTTAGGACGATCC	alt_3676_missing	9	19	15	11	14	7	19	12	14	9
CGCCCTTCATCATATC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TTTCTCATACAGCTTA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TGTATTTGCGCCTCAA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
GTAAGGGTCAGGCACC	alt_3676_missing	27	16	28	17	29	18	27	10	29	12
TTTTCGCATATTATTC	alt_3676_missing	11	8	15	12	14	13	16	13	19	1
TGTAAGCGACAAGTGG	alt_3676_missing	40	66	38	26	59	29	66	43	63	22
GCTATCTAGACCAGGT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TATTTTCTCTCTTCAA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
GGATGCAGGCGGATAA	alt_3676_missing	5	5	2	1	10	9	2	3	6	1
CGGGTTCCTATTCCTT	alt_3676_missing	1	4	4	2	7	0	5	5	4	4
TTCTGAGAATATCCCG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
GAGATTTAAGTGCCGA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
AGATCCCGAACCACTG	alt_3676_missing	1	2	1	3	10	9	3	2	7	2
AGGCGCTAAAGGGTGT	alt_3676_missing	10	25	7	10	29	18	18	15	23	12
TCTACGTTTCTGCTCC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
GAATTTCTTTTGTTTG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TGGTGAAGAGAATTCG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CGTCTCTCCCGATCAG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TACTGTTTAGCTTTAG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
ACCCGGTTGTTTCACC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
GGAGTCTAACTGAACG	alt_3676_missing	2	3	4	9	9	8	7	0	4	6
ATGAGGAAATGCGCCT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TCTGTTATATCTGGGA	alt_3676_missing	2	3	4	2	7	3	4	0	8	4
GTCGTCCCTAGAATCT	alt_3676_missing	1	0	1	0	0	0	1	0	2	1
ATACGACGAGTTCTGC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CATGGATTGTTCCCCT	ref_3676_missing	2	2	0	0	0	0	0	1	1	0
CGGTCTTGCTTAGTCA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
GGTCAACCGGTTGTGG	alt_3676_missing	10	35	10	6	22	8	26	10	38	3
ACTGTTCTATCTGATA	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TTAGGTAGCCCAGCTT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
CTATCTTCGACTGGGC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TATGCCTTTAGGATGG	alt_3676_missing	1	7	7	4	3	2	4	0	5	3
TGACTCACGTACTGCC	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
ATGCGCCTGGTTAAGT	alt_3676_missing	2	10	13	5	7	2	6	3	6	4
TGCTCCGGGGCAGTAT	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
TCCACTACGGCTCCTG	alt_3676_missing	0	0	0	0	0	0	0	0	0	0
ATTATCACTCTGACAC	alt_45_missing	12	17	10	7	15	15	16	12	28	8
GGGCGTCTACTTTTTG	alt_45_missing	1	6	6	2	8	3	4	1	4	1
TGTGCTCCATTTAAAT	alt_45_missing	11	11	10	13	22	9	27	14	19	13
TGATGAACGACTTAAT	alt_45_missing	35	39	34	36	36	23	49	32	41	24
CGTGCCCGAGGGGCCC	alt_45_missing	0	0	0	0	0	0	0	0	0	0
GATTAGACAACCTTTT	alt_45_missing	15	22	20	20	25	23	25	20	18	11
GTGATCTCTGCCCTTA	alt_45_missing	0	0	0	0	0	0	0	0	0	0
TATTAGAGCGCGCCGC	alt_45_missing	9	14	7	8	6	8	15	11	20	17
GGGCATGTTGTCTTTT	alt_45_missing	68	106	99	90	102	103	107	63	123	95
GACTTTAAGACGACTC	alt_45_missing	24	69	40	27	49	17	65	26	68	22
TGCGCTCCTGACTAGC	alt_45_missing	11	15	13	6	6	6	10	4	20	6
GGTTGTGCCTTTGTAT	alt_45_missing	43	62	38	42	62	39	64	27	74	43
TCGATGTGCTTCCGAG	alt_45_missing	17	15	18	23	22	12	21	8	17	17
TTAGGGTGAGCAGCCG	alt_45_missing	17	17	6	15	14	10	17	13	15	8
TAGGATGGCCACCCTA	alt_45_missing	24	34	30	31	41	31	41	18	39	39
GATCTGATCGCCCAGA	alt_45_missing	44	79	43	48	73	43	70	41	76	45
GGCTCCGGCAGGATTT	alt_45_missing	19	33	22	29	24	16	28	22	29	23
CAAATATCTCGTAAGG	alt_45_missing	41	56	41	48	68	45	61	41	73	38
TAGTAACAGAATTGAT	alt_45_missing	18	15	16	18	20	15	28	19	21	16
TAACAAGTTCAGGCTT	alt_45_missing	19	19	13	21	17	13	20	13	13	16
GGCCCAGGAGGACTTG	alt_45_missing	29	39	32	27	30	15	44	16	34	19
CGAGGAAAAACAATAG	alt_45_missing	28	30	27	25	31	18	39	21	34	17
TTTAGGGTTACACATT	alt_45_missing	69	90	75	57	72	57	96	50	99	45
GGCAATAGTATTGCGA	alt_45_missing	0	0	0	0	0	0	0	0	0	0
TCATGGTGGGAGGTTA	alt_45_missing	16	27	27	23	34	16	11	9	25	11
CGTTCTTTATCCAACC	alt_45_missing	1	6	0	4	1	2	5	3	5	0
GTTTCGGCGCGATCGT	alt_45_missing	8	4	6	2	6	2	4	2	1	6
TCTTTTTGCTATGAAG	alt_45_missing	7	16	13	3	10	12	11	6	13	13
TCAACATTTCGTGCCC	alt_45_missing	67	98	94	54	92	60	89	65	107	59
TTGTTCCGGTATATCG	alt_45_missing	60	63	57	49	73	51	67	59	62	37
CCGTTGTTCTACCCTT	ref_2406_RC	8	53	7	12	41	5	37	9	41	2
TACGCTAGACCTCCAA	ref_2406_RC	4	6	2	5	7	9	12	3	4	2
CATTGCCTGAGCGAGG	ref_2406_RC	3	3	8	1	13	4	10	1	6	2
TTGCCAGTAGATTATA	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CTGCCCGGTCACTTCG	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CCCTATTCCACCAGGG	ref_2406_RC	13	21	13	18	24	16	14	6	11	4
ATTTATACACCGTCTG	ref_2406_RC	12	20	18	8	20	13	17	8	9	8
TTGGTACTATGCAGTC	ref_2406_RC	30	29	29	17	33	19	47	22	37	11
TATTCCAAGTCGGTAA	ref_2406_RC	12	33	28	15	34	26	31	17	25	31
CAATTACGGCCTCATG	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
ACGTAGACCCTTTAAC	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TAAACCACGGGGCGCG	ref_2406_RC	12	21	7	11	17	13	9	3	13	10
GCAAACCTTGCTCTAG	ref_2406_RC	6	15	5	8	5	6	9	9	12	7
TATATTGAGCACATAT	ref_2406_RC	22	27	17	20	38	22	36	24	33	24
CATACTGTATCATCCC	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
GCTATCAGGAATTCCA	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CGATGCGTTAGCGTCC	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CTGAATAGGTCGCTTC	ref_2406_RC	9	12	14	8	17	6	12	7	14	9
GGTCTCGTTCTAGGAT	ref_2406_RC	18	34	26	24	25	18	27	10	32	17
TCACCTTCAACCTGCT	ref_2406_RC	40	40	31	34	46	27	51	24	48	35
GCCAAATCCGCACGAG	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TTGCAGCTTCTGTCTT	ref_2406_RC	18	21	11	11	22	11	12	12	12	14
AGGGTGCCTGAAACTT	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TTTCAGGGGGGGGTCA	ref_2406_RC	9	18	10	16	15	6	17	7	17	6
ATCATTTTGATCTGAC	ref_2406_RC	5	10	9	13	15	7	6	4	14	5
TTGGCTCGTAGTCCTT	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CTTTTGGCTTCGCTCT	ref_2406_RC	11	15	16	15	14	12	17	12	21	13
GTTGTATCGCGGATTA	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TTGGAACAGTTGACAC	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
GCCGAGCATAAAGCTT	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TTTTGATTCCTGGTTC	ref_2406_RC	18	43	29	32	27	22	36	28	40	20
GCAATGCGCAACGACC	ref_2406_RC	39	79	45	18	90	27	66	27	71	26
ATTCCGACCCTGAGCA	ref_2406_RC	10	14	16	15	18	8	11	7	9	7
ACGAAGTATTATCTGA	ref_2406_RC	165	235	219	169	210	164	232	171	247	145
GGGAAGGTAGTCTACC	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TGTGGTCATTTCTGGT	ref_2406_RC	3	12	14	10	19	15	14	8	9	8
ACCTTTCAGATCGTTT	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CAATCACTTCGCTTTC	ref_2406_RC	6	2	4	10	4	5	2	2	3	4
ACGGGCACAAGGGACG	ref_2406_RC	46	77	51	32	73	50	65	40	72	36
ATTAGCATGCAGTATC	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
AGGTCTCTTACGGGGG	ref_2406_RC	59	72	60	41	79	57	69	38	89	55
GGGTTGAATTTTACGA	ref_2406_RC	33	31	35	29	52	26	40	35	61	31
GATCTTACTTATGTAA	ref_2406_RC	9	16	17	9	19	12	18	14	21	12
ATGTTGGGTAATTTAT	ref_2406_RC	52	77	60	66	70	52	83	67	73	35
CGCGGTTTGCATCCCG	ref_2406_RC	60	85	74	72	82	56	99	66	92	52
GTATGTGTTTATGGTT	ref_2406_RC	21	25	18	13	36	18	37	14	51	12
CACACTGTTGGCACAT	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
GTCGTGAACATTCGCT	ref_2406_RC	16	18	22	12	16	11	17	7	19	11
TTATCTTAGTAGATGA	ref_2406_RC	6	14	8	10	12	9	12	9	8	6
ACACACCGGGCTACTC	ref_2406_RC	27	38	21	19	39	23	52	16	40	21
CTCTCAGTCGGCGCCA	ref_2406_RC	19	13	18	19	26	15	21	16	30	10
GGTGACTAACCCTTTG	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TCATAGTGTTTGGCTT	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TTCACTTCACATAAAG	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CATGCACGGAAGACTG	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
CCTTGGAAATATGGCT	ref_2406_RC	20	55	33	24	35	34	32	34	54	27
CACCTTTTATCTTACT	ref_2406_RC	4	0	2	1	5	1	1	5	4	2
ACGCTCCAATCGGAGT	ref_2406_RC	5	9	6	1	3	2	5	3	8	1
CGCCCATCTACAAACT	ref_2406_RC	6	9	3	3	3	9	13	5	7	9
ACCGCGCTGATCCGAG	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
ATTACTCCAACCACCT	ref_2406_RC	23	47	27	32	37	23	43	14	41	21
CGGACCTAGTTGCGGC	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TCTACGATTGCTGGTC	ref_2406_RC	56	112	63	55	93	50	90	54	102	35
GTCTAAAGAGCATCGA	ref_2406_RC	2	5	5	5	3	2	2	2	8	2
GAAGTTCAACAGCACT	ref_2406_RC	180	295	264	217	291	197	295	223	366	174
AAGGGCCATGTAACCC	ref_2406_RC	14	15	8	5	13	11	7	11	15	7
TAATGAATGTCCGCGT	ref_2406_RC	40	69	55	60	67	77	57	33	73	55
GGGCATCTTTATCAAG	ref_2406_RC	13	28	7	12	14	11	20	10	21	6
ATAATGAGGAACGATG	ref_2406_RC	68	91	68	68	106	60	104	72	107	80
CACTCCTGGGCCTGTA	ref_2406_RC	0	0	0	0	0	0	0	0	0	0
TCGGGTTGTTAGTGTA	ref_5763_new	26	27	37	45	28	37	33	25	35	26
TGTTCCATTCCCCAAG	ref_5763_new	29	13	22	12	16	20	23	17	18	18
CGTGCATATAGGGACA	ref_5763_new	25	14	29	27	12	26	19	22	43	21
AGATTGCATCAGTCAC	ref_5763_new	15	11	19	12	7	14	3	11	12	16
CCGACGCTATTTTTGT	ref_5763_new	0	0	0	0	0	0	0	0	0	0
TCGCCCACATACCACG	ref_5763_new	67	36	69	64	37	51	50	43	55	38
ACGGCACCAGTGCGGC	ref_5763_new	0	0	0	0	0	0	0	0	0	0
ACCCAGCTACATTCAG	ref_5763_new	0	0	0	0	0	0	0	0	0	0
CGAGCTACTGTTGGCC	ref_5763_new	31	75	40	32	83	24	79	34	76	30
ATTCTTCGATAGATAT	ref_5763_new	6	6	9	9	7	6	8	7	5	3
AAAGTCTTCCTTTGCC	ref_5763_new	11	6	14	9	9	13	8	12	5	6
GGCTGTTCATTCGTTA	ref_5763_new	21	10	28	15	13	16	14	17	12	11
GTTTCTACGCTGTGCG	ref_5763_new	64	46	64	66	64	52	47	45	54	53
TGGTGAGTGTGGGTCA	ref_5763_new	0	0	0	0	0	0	0	0	0	0
TCTAGAGTTTCCAACT	ref_5763_new	3	1	2	7	4	2	1	0	1	2
TTAGCTTCATTGGGCT	ref_5763_new	116	85	116	111	86	105	93	107	110	77
CCACCATAGCCGTACG	ref_5763_new	10	16	30	20	31	13	43	17	38	14
CCCGAATCGAGGTACA	ref_5763_new	66	57	64	82	57	56	59	79	77	51
CTTAGTTTTTATTCTG	ref_5763_new	33	31	41	52	30	41	23	34	39	42
TCGGACGGCCTAATAT	ref_5763_new	0	0	0	0	0	0	0	0	0	0
TCGTAAATCTTTGCCG	ref_5763_new	36	16	34	28	26	18	23	28	18	34
ACAGGCACGCGCAGCC	ref_5763_new	0	0	0	0	0	0	0	0	0	0
GCTTTCTAGGCTGTTA	ref_5763_new	40	17	25	24	16	29	28	30	29	27
TTATTTCTCCTTACGT	ref_5763_new	0	0	0	0	0	0	0	0	0	0
GGGCCGAATAGGTTGA	ref_5763_new	23	13	31	17	15	20	18	21	24	14
GGATAGTGTAGATACG	ref_5763_new	120	104	138	138	86	112	114	111	110	112
TCCCAGCTACATTCAG	ref_5763_new	65	57	70	70	53	54	60	66	65	43
GAGATCCACAACGTTC	ref_5763_new	63	53	78	57	52	49	63	61	41	44
AATTCTATTATCTCTA	ref_5763_new	214	109	242	211	110	181	131	175	129	166
CGTGTGTTTTTTCCTC	ref_5763_new	50	37	62	52	53	44	30	53	38	63
CGTACGCTGGTAGGCT	ref_5763_new	15	12	18	15	14	11	16	15	11	9
CTTTTTGTGGGATGTG	ref_5763_new	0	0	0	0	0	0	0	0	0	0
TTTCTACGTGGTGTTT	ref_5763_new	16	13	19	17	25	11	16	13	14	15
AATTCGTTCTTTCCGG	ref_5763_new	23	15	30	23	20	25	16	29	14	27
GTAACGGGTAATCTTT	ref_5763_new	176	126	192	186	125	179	150	144	135	160
CTTTCTATTCTAGTTC	ref_5763_new	6	13	15	9	10	8	9	7	5	11
GAACGGGATTCGCGCC	ref_5763_new	9	3	5	15	3	5	2	5	6	11
ATACGGGGGGTTTTGC	ref_5763_new	0	0	0	0	0	0	0	0	0	0
TTATGCGGTCGCTTAT	ref_5763_new	96	85	110	106	80	94	68	77	87	93
GTGTTAACTTTAGAAT	ref_5763_new	103	107	124	108	105	101	90	87	92	83
TAGGCATTGATGGATT	ref_5763_new	33	29	69	36	26	41	29	34	35	42
TGGTGTCGTCGCAATG	ref_5763_new	0	0	0	0	0	0	0	0	0	0
TTTTTCCTTATTGTCC	ref_5763_new	88	118	142	123	88	127	105	102	127	109
GCCTCGTTCGTTACTT	ref_5763_new	0	0	0	0	0	0	0	0	0	0
CGGTGATTATGACCAG	ref_5763_new	8	5	10	8	7	3	4	2	8	11
GTTTAAATTCGAGTTC	ref_5763_new	26	17	31	29	14	22	20	24	22	20
CTTAGGTTTCCTTTTT	ref_5763_new	61	45	62	65	39	60	45	43	38	29
CGATTGTACCACATTA	ref_5763_new	190	127	233	169	126	165	161	183	136	156
GAATTTCGGAGTAAAG	ref_5763_new	38	22	46	35	25	36	35	36	43	27
TTTGGTACTTCCCATC	ref_5763_new	26	18	30	21	12	23	14	19	17	20
CGACAGAAGGGGTTCA	ref_5763_new	36	34	48	40	34	40	41	33	26	36
CTCACAAGTGTCGGTG	ref_5763_new	4	10	6	6	8	7	8	6	7	4
CTTTTCTACACTGAGG	ref_5763_new	0	0	0	0	0	0	0	0	0	0
CTGGGCTCGTCACTAT	ref_5763_new	22	12	24	18	15	19	18	22	30	21
CCTTTTCCTCGTCTTT	ref_5763_new	0	0	0	0	0	0	0	0	0	0
ATTCTGAGCACTTTTT	ref_5763_new	35	27	48	30	21	43	30	37	31	34
CTGAGCGGGTCATAGC	ref_5763_new	53	63	66	69	39	59	34	54	50	38
GCATTTATTTGCGTCG	ref_5763_new	115	90	126	98	86	107	85	106	81	78
AGGCTAATTCGTGACA	ref_5763_new	0	0	0	0	0	0	0	0	0	0
AACCGTGTCGGTTACC	ref_5763_new	11	14	13	11	9	17	9	20	16	9
ACATTTCTTTAAGCAG	ref_5763_new	28	19	21	19	17	21	10	21	9	17
AATCGTGAGCGCCCAT	ref_5763_new	49	32	54	64	30	42	26	39	33	43
ATGAACTCGTAATGCG	ref_5763_new	54	37	57	59	43	73	36	47	49	66
TCACATCAATTGTCCA	ref_5763_new	0	0	0	0	0	0	0	0	0	0
TGCTGCTTCAAGGATA	ref_5768_new	93	90	135	100	121	95	100	105	110	86
TATGCCGAGTGACTCA	ref_5768_new	37	35	57	35	40	41	39	27	31	33
CTGCGGCTCCAAATGT	ref_5768_new	27	31	40	35	43	24	40	20	44	30
GTAACCCACTTGCAGA	ref_5768_new	3	2	3	5	3	0	2	0	5	6
ATGTACTCGCTATAGT	ref_5768_new	64	58	74	45	84	63	69	42	79	58
ATAGCGCCATGTTGTC	ref_5768_new	7	12	14	15	10	17	10	8	15	21
CCGGTCTCTATTTCAC	ref_5768_new	39	108	52	45	120	43	122	47	86	37
ATCCGTAATACGATCA	ref_5768_new	0	0	0	0	0	0	0	0	0	0
TTAGATCGAGGTTCGC	ref_5768_new	9	7	9	13	6	9	4	5	10	9
GTTATATTTCCCTTTA	ref_5768_new	123	93	118	114	100	88	110	104	113	101
CTCCAACATTTTTCTT	ref_5768_new	67	60	85	90	97	72	75	67	71	73
ATCTGCCATATCCCAG	ref_5768_new	0	0	0	0	0	0	0	0	0	0
ACATACGGGATTGCGT	ref_5768_new	27	30	24	18	27	19	27	25	28	30
CACCTTTCGCACGTAT	ref_5768_new	25	38	37	43	32	11	27	22	37	23
GTCCGAGTGAAGTACC	ref_5768_new	21	22	22	24	27	20	23	22	23	15
GCGTTTCTTTCTTTTG	ref_5768_new	0	0	0	0	0	0	0	0	0	0
TACTGCCGTTGGGGTG	ref_5768_new	54	38	58	48	39	51	51	46	58	43
TAATTGCATTTGTACA	ref_5768_new	47	42	71	46	60	60	53	61	63	42
CAATCTAGTGTGGTAT	ref_5768_new	46	66	77	46	59	46	50	56	64	38
TGTTTATTTCAGACTA	ref_5768_new	9	24	9	9	6	5	8	5	9	3
TTGCAGTCTCGTAACC	ref_5768_new	18	8	21	19	17	17	20	17	22	26
TATACCGGTATCTGTA	ref_5768_new	0	0	0	0	0	0	0	0	0	0
CTACCTCTTCTTCTGG	ref_5768_new	60	63	69	55	63	80	78	49	76	48
TTTTCTCTGGTTCATC	ref_5768_new	11	16	21	10	16	14	13	18	13	9
CGGGGTTTTGGGGCAG	ref_5768_new	11	13	17	17	13	14	12	15	11	12
CACTGGTTAGCGTTTA	ref_5768_new	37	43	34	28	58	26	56	43	49	17
AGGTGGCGGCTTTGGT	ref_5768_new	28	23	44	33	29	23	29	30	27	35
ATCTTTAATTTCTTGC	ref_5768_new	26	19	32	27	20	15	22	22	34	9
ACTATAAAGTTTTGTG	ref_5768_new	44	49	45	35	52	27	49	31	42	29
GCTCTTCTACACTTAC	ref_5768_new	15	16	22	5	13	13	10	11	19	13
CTGTAAACCGATACTC	ref_5768_new	23	25	25	17	17	19	14	17	25	20
TATTTTCACCTCAGGT	ref_5768_new	90	92	92	88	79	85	79	68	90	69
GTTGGTCACTTGCTTT	ref_5768_new	0	0	0	0	0	0	0	0	0	0
CTTCTGAAGGCTTCCC	ref_5768_new	35	32	33	30	21	26	39	28	27	26
GACAATTGGTTTGGGC	ref_5768_new	13	15	25	7	11	16	9	17	20	15
ATCCCCAACCGCATAT	ref_5768_new	167	173	218	190	176	167	145	166	191	129
ATGTACGCCATCTAAT	ref_5768_new	32	37	45	50	25	34	49	39	49	40
TCTCACGCTGGAGTCT	ref_5768_new	33	44	49	38	38	42	48	34	51	45
GTTAGCTATGGGCGTG	ref_1269_RC	5	3	9	3	9	7	9	5	3	4
TAGCGAGGTCATTGGA	ref_1269_RC	13	13	19	17	13	9	13	14	10	8
GTAATCATAGTCGATG	ref_1269_RC	41	56	70	49	61	43	59	44	64	40
TTTCTACGGGGTTGCC	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
TGCCTATTTGCGTCGG	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
TGAAGCAGCTTTCATA	ref_1269_RC	4	6	12	5	3	2	4	8	4	7
GCTCCAATAATCTCTC	ref_1269_RC	14	21	16	10	20	15	16	12	16	9
TTATAGATGTTGCCAG	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
TGCTCCGGAGTCCTTT	ref_1269_RC	5	7	11	3	7	8	10	1	11	6
CGTGTCCTCCTTCCTT	ref_1269_RC	5	24	15	8	13	9	13	11	13	10
TGTATTTGATGTTTTA	ref_1269_RC	11	42	20	19	35	23	28	24	29	12
GCCCTTTTCCAGGTCT	ref_1269_RC	107	152	166	117	176	95	229	106	208	93
TTATCTGCTTGCGGTG	ref_1269_RC	12	22	10	15	11	7	28	3	25	13
TCCAGATCCAGGATTG	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
TAGAGGTCCTTCATTT	ref_1269_RC	28	46	48	47	77	53	69	42	63	32
TTGACCCTTCGTCCCG	ref_1269_RC	22	38	35	30	52	20	38	20	42	19
TTTATCTCATCATACT	ref_1269_RC	25	34	39	46	45	27	47	28	36	32
CAATGCCTTCGTTTTC	ref_1269_RC	35	30	42	38	36	25	40	27	41	26
TGGTGGTTACTAACGG	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
AAACCAGTCACTCGTA	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
TCGTTTCCGTCTCGGA	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
GTTTTAGGGTCGGTGA	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
GTTTAATCTCTGCCTA	ref_1269_RC	48	85	68	60	79	45	88	36	101	54
TGTACTCCATCATCCG	ref_1269_RC	11	7	11	4	9	7	9	7	12	3
TTTAGGTTGATTTACT	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
AGGGCACCCGCCCCTG	ref_1269_RC	17	20	24	16	19	19	17	12	24	15
GAACCCTTCTTATTCC	ref_1269_RC	9	13	10	7	8	3	13	5	6	2
TCGTGAGAGCCCCAGG	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
GTGGCGATGAAGTGCG	ref_1269_RC	14	30	28	24	17	17	36	15	30	18
AAGAGCTGTTGAGTTG	ref_1269_RC	14	14	9	20	15	19	20	13	17	20
TGTACAATGTCTGTAT	ref_1269_RC	5	2	6	4	12	5	10	4	13	4
CAAACGCATGGTGCAT	ref_1269_RC	22	28	30	20	24	21	35	12	22	14
GATTAGTAGTTTTGTT	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
TTGTGCAATAACATTG	ref_1269_RC	3	6	6	5	3	2	7	1	12	3
CTCATCCCGTCCGCAT	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
CTATGGTTTAACCTGC	ref_1269_RC	6	9	7	8	10	10	16	8	11	12
CGCGGGCATCATTTTC	ref_1269_RC	0	0	0	2	1	0	2	0	0	0
TTCTCCGCTCAGGTAT	ref_1269_RC	72	125	97	81	139	65	130	71	135	51
TGTTCCCTGCCAGCAC	ref_1269_RC	6	9	12	11	10	13	10	8	3	5
TTCGTGTCTATCTACC	ref_1269_RC	35	46	25	21	46	23	34	14	43	29
GCGTTACTCCAAGTAC	ref_1269_RC	37	81	46	24	78	13	112	18	97	20
TGATCAGTCGTTCTTG	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
CGCCTCGGAGCTGCAC	ref_1269_RC	17	20	16	12	12	16	20	13	16	15
AATCTCTCGATTAATC	ref_1269_RC	4	4	7	5	7	5	3	5	5	6
AAGGGTTTCATAGTCG	ref_1269_RC	5	9	4	5	10	4	5	3	13	7
ATGCTCGATTATTACA	ref_1269_RC	29	54	44	45	54	47	55	32	58	40
CTTTAGGAATTATGCT	ref_1269_RC	41	48	56	37	41	59	49	24	42	36
CTCACTCCCTGGAGAA	ref_1269_RC	6	14	4	7	11	6	16	14	15	6
CTTTTTCCTGCCATAG	ref_1269_RC	0	0	0	0	0	0	0	0	0	0
TTGGGATTATCAGTTG	ref_1269_RC	12	14	6	11	11	8	8	8	15	10
GGCTGTAAGTAGTAAA	ref_1269_RC	14	26	17	24	21	15	20	18	25	15
TGGATGTGGAGGGGTC	ref_1269_RC	14	18	18	18	10	11	16	9	17	7
TCGTTTCCGTCATCCC	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
GAGTAGCCATATCCTT	ref_1851_fdr	6	14	6	4	14	4	20	4	13	5
CGCCTTGCACAAAGGC	ref_1851_fdr	1	4	1	0	4	2	1	2	3	0
GTCGGAGGTGAGAGCC	ref_1851_fdr	23	38	29	17	46	16	37	22	24	19
TGGGATCTCTACTCTG	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCCGTTCCTATCC	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TCCCAACAGGGCTACA	ref_1851_fdr	100	200	146	113	174	114	186	98	180	109
TTGCAGTTGTTGACCT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
GCGCGGCGTAAACTAC	ref_1851_fdr	12	15	21	6	31	8	17	17	21	7
GACAGGTCATCACGTT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGGCGTACAAGGG	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTTCCGTAATCCG	ref_1851_fdr	8	9	9	2	13	13	10	14	20	13
ACGTCATTCAGCGCAT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
GTTTAAACCGTGGATT	ref_1851_fdr	19	30	30	18	41	15	34	34	46	10
GATTGCATTGCAGCCT	ref_1851_fdr	132	213	190	134	246	130	260	112	254	126
ATCAATGAGGGCGCAA	ref_1851_fdr	69	114	100	68	122	82	114	61	151	55
AAGGATTGACCCACGG	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TGGTAAATTCCTTTCA	ref_1851_fdr	9	17	13	7	17	7	16	7	11	9
TGTCTGGGTTATTTTG	ref_1851_fdr	14	26	22	12	19	10	48	13	25	13
CCAGAGCTCCATTTCC	ref_1851_fdr	9	14	6	20	9	8	9	4	8	5
TGAGTCTGGGGACCGC	ref_1851_fdr	3	10	8	6	17	9	12	4	25	0
TTACTGGGAGTCTTGG	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TGGGGACTTTCTAGAC	ref_1851_fdr	4	16	9	7	14	6	10	8	12	3
TCAGTGCTCCATTATC	ref_1851_fdr	5	9	2	5	8	5	8	4	4	3
AACTGGATGCATGTGT	ref_1851_fdr	25	43	35	19	51	20	53	15	60	21
CGTGGCCAGAGGGTAT	ref_1851_fdr	22	33	27	26	50	23	33	14	43	16
CGACAAAGGTCTGCCA	ref_1851_fdr	16	23	28	22	28	12	27	22	27	15
TGTCAGATTTTCAAGT	ref_1851_fdr	35	45	38	37	57	23	56	30	67	33
GTTTCTCACTAGATTA	ref_1851_fdr	38	79	56	45	60	49	75	33	80	32
CGTGTGGCCTGTAACC	ref_1851_fdr	0	6	1	4	1	1	1	1	7	2
CCGGTCAGGAAGTAAG	ref_1851_fdr	2	11	4	1	20	5	13	2	9	2
TTCAGAATTTATGGTG	ref_1851_fdr	19	29	16	17	36	15	41	22	35	22
TCTTTTCAGGATATGT	ref_1851_fdr	33	63	45	47	71	35	47	37	58	24
CAGCTGTCGCTCCGCA	ref_1851_fdr	6	23	14	11	25	10	17	7	21	5
CGGGTCGGTAAGAGCC	ref_1851_fdr	3	0	2	1	2	0	1	3	1	2
AGCAAATTGTAAAGCA	ref_1851_fdr	35	59	32	34	65	41	65	47	77	38
ATCTAACCTGTAGTCT	ref_1851_fdr	16	24	18	17	35	24	26	14	32	12
TGCCCGTTAATCGCAT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
GTCAGAGTTCCTTCCC	ref_1851_fdr	14	34	19	9	10	13	27	13	24	10
ACATAATTTCATACCT	ref_1851_fdr	40	73	43	29	65	48	73	32	74	53
CCGACCGCCATTCCGG	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
GTATTTATAGAAATTA	ref_1851_fdr	15	37	26	22	42	13	32	22	36	19
TAGTCTTTTTGCATTT	ref_1851_fdr	11	27	16	12	31	13	30	14	21	11
CGCCCAAGGGTAATAG	ref_1851_fdr	61	118	68	59	100	47	88	52	85	53
AACTTTCTTAGATGCC	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTCGACTTTATCC	ref_1851_fdr	3	12	9	4	19	9	13	7	10	4
ACGCTCATATTTTCTC	ref_1851_fdr	24	33	45	23	27	24	24	23	38	29
TGCCGTAGCTCTGGAT	ref_1851_fdr	13	36	26	25	43	17	37	20	30	17
TAGGTGTCGTTTAACT	ref_1851_fdr	15	32	11	14	31	15	22	16	38	8
TCCTGACCTTCGCTTC	ref_1851_fdr	64	139	93	69	150	63	165	59	168	74
AGTTACGACGAATCTA	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
AACCCCATATACATAG	ref_1851_fdr	55	107	74	42	105	65	109	65	123	41
GGTCTACGGCACGCTG	ref_1851_fdr	7	17	13	15	28	8	18	11	23	13
GACGAACCATGATTCG	ref_1851_fdr	8	21	11	8	21	13	15	8	18	20
TTGGCGTCGCTATACA	ref_1851_fdr	0	0	0	0	0	1	0	0	0	0
ATTGTCTAGTGTTTTG	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TAAAATTGTAAAGGCC	ref_1851_fdr	27	15	22	12	22	10	38	9	30	16
AAGAGTTTTGCGGTAA	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TATACCTGTTTGTTAT	ref_1851_fdr	20	58	33	36	56	39	47	27	65	27
GCAAGGGTCAGACTCG	ref_1851_fdr	1	9	4	4	7	5	7	6	11	2
TTTTCTCAGCTTTTCC	ref_1851_fdr	130	218	136	100	245	115	262	130	233	107
AATTGCACCTAGGTAC	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
ATGTATTAGCATGCGT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TGTGCGCTCGGTAAGT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
CGTAAGCCACGTTAAT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
TTATCTGCAGATAGTA	ref_1851_fdr	4	11	7	10	9	11	1	5	11	5
CCTCAGACCGGCGCCC	ref_1851_fdr	5	52	4	6	36	8	60	2	58	3
GATGCAAGACTATCCT	ref_1851_fdr	0	0	0	0	0	0	0	0	0	0
GCCGAGAGATCGGCGT	ref_1851_fdr	37	88	49	42	83	49	80	33	94	42
TTGTCTCTTCACAGCG	ref_1851_fdr	15	16	16	15	27	12	23	9	16	7
GCTTGCAAGCCTGCTT	alt_5925_new	1	11	6	6	10	5	11	5	10	4
TTAATTCAATGAGTGT	alt_5925_new	10	17	12	8	16	8	26	7	15	1
TTCCCTGTTGCGGAGG	alt_5925_new	17	33	10	14	36	19	39	9	37	10
GTTCTTGTGAAATACA	alt_5925_new	29	51	40	19	43	41	53	20	81	25
TGTAAACGGTAATTCC	alt_5925_new	7	11	12	4	12	5	12	8	11	6
CATAGGGGGGTTCACC	alt_5925_new	27	46	25	16	29	29	45	23	30	21
TCGGTTCTCGGGTATT	alt_5925_new	4	14	9	2	13	7	10	4	12	1
TTTTAGGCATTATTAA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
CGTTTGGTAGACTGGG	alt_5925_new	32	77	51	40	60	30	66	28	52	40
AGCTGCTCCAGTTTCA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
ATGCCATACAGTCATA	alt_5925_new	3	5	9	8	14	4	18	9	13	4
CGTCCCAAGTAACTAC	alt_5925_new	2	2	5	3	8	6	13	1	13	6
GGGTTCGTTTCATGGG	alt_5925_new	13	33	19	19	25	14	35	10	22	18
CATTAGCCAGGGAGGT	alt_5925_new	0	0	0	0	0	0	0	0	0	0
GTGTTCTGGGACACTT	alt_5925_new	1	5	4	1	5	0	5	1	6	4
TACAGCGGAGTTTTCT	alt_5925_new	10	31	23	23	37	18	40	27	37	17
GTATTGTGCAAGTACT	alt_5925_new	20	28	31	20	24	8	17	16	30	14
CTGTTAGTGCATCTCT	alt_5925_new	23	46	32	18	39	20	49	12	43	18
CTCTTAAGGCTATGTC	alt_5925_new	14	26	15	17	22	20	34	19	28	12
GCAGTCGTTTACCTTT	alt_5925_new	6	20	14	8	30	15	30	19	21	16
AGCTAATCTACTCTAG	alt_5925_new	28	36	31	23	41	19	54	20	50	29
GGGTATGGTAATACGC	alt_5925_new	0	0	0	0	0	0	0	0	0	0
ATCGGCTCACTCATTT	alt_5925_new	0	0	0	0	0	0	0	0	0	0
GGGACAGCTGTAAAAC	alt_5925_new	29	49	42	34	60	24	59	29	55	27
TCGCTAAGGTTTAGTT	alt_5925_new	0	0	0	0	0	0	0	0	0	0
TAAGCCTCGTTCGCTA	alt_5925_new	3	11	6	6	12	1	4	5	5	1
CCCACACAATGGTCTA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
AATAGGCTTATTTTCT	alt_5925_new	31	53	41	52	49	33	56	31	57	30
TTGAGAGTATGCTTTT	alt_5925_new	47	67	59	37	78	48	80	45	86	41
TCGGCTCTATGTCCTC	alt_5925_new	6	24	2	6	19	4	12	3	10	2
CTGTAACGTACCATAA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
GGAGATTTTAGGTAAC	alt_5925_new	17	23	28	16	27	18	41	14	42	16
CAGCGTGTCAGAGACG	alt_5925_new	0	4	1	1	3	0	1	0	2	0
CTGGCCCGGCACACAG	alt_5925_new	33	32	40	44	50	26	54	29	52	43
TCAAAGTTAACCTGCG	alt_5925_new	49	82	55	48	95	44	71	50	71	43
TTACGCTAGCGTGCCC	alt_5925_new	5	7	7	3	6	2	7	3	7	7
ATTGCATGTCTCTGGC	alt_5925_new	13	28	20	21	30	14	25	18	29	20
GAAGCTTTACTGTTCG	alt_5925_new	15	34	27	22	28	15	22	15	24	17
CAATTCTTGTACTCTG	alt_5925_new	3	9	4	5	11	3	9	4	9	1
GCCCATTCCACAGTAT	alt_5925_new	24	23	13	17	36	18	25	15	25	12
TGAACTATTGATTTCA	alt_5925_new	8	12	16	7	13	2	18	5	17	7
TAAATTTGTGTTTTCT	alt_5925_new	45	69	46	46	67	36	82	44	71	41
ATTAACTCTTCGTACA	alt_5925_new	28	42	43	38	53	29	49	43	50	30
TGACGTGAGTTTTTGC	alt_5925_new	10	21	11	22	21	5	14	10	26	12
CGGCATTCGTGCCGGA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
CGTGAAAATTCGTTTG	alt_5925_new	5	9	12	10	16	7	10	4	18	14
ATTAATCAGGTGGTTC	alt_5925_new	30	41	45	30	39	40	47	25	50	29
AGCCACTAGGTACTGC	alt_5925_new	7	8	4	5	10	9	5	2	7	1
GTATCTCGCTAAATTG	alt_5925_new	80	133	98	81	144	93	144	68	114	75
CAGCCTTGACCATGAC	alt_5925_new	26	52	30	41	69	37	68	18	61	25
AACGATAATTTCCCGT	alt_5925_new	16	25	16	10	38	15	20	11	24	13
GGTGTGGGTCATACGA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
GGGAGACCCAATTCGG	alt_5925_new	12	7	6	4	16	5	13	10	5	6
TGATCTGAAAATTGAC	alt_5925_new	36	65	36	38	57	28	64	30	83	27
AAGTCATCTATTTAGG	alt_5925_new	14	24	23	11	27	10	29	8	30	18
GTAATCACGCCTTAAT	alt_5925_new	14	14	17	13	14	8	18	5	14	16
AATCTCTTTTCTTGCT	alt_5925_new	11	18	16	9	21	6	18	17	17	8
GGGCGTGCCGTTCTCT	alt_5925_new	8	16	9	11	15	13	19	5	15	6
AAATATGGCGTGCTAA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
ATACAGTCTATAGACA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
TTATCTTTGCTTTTTC	alt_5925_new	0	0	0	0	0	0	0	0	0	0
CGGGGTCTGCCTTGCC	alt_5925_new	8	32	20	16	24	19	26	16	22	13
CTCTCGGCCCTCTTGT	alt_5925_new	12	27	12	14	19	6	31	14	24	8
CCAGACTGCATTTTGT	alt_5925_new	8	42	8	8	58	8	53	4	70	5
ACGCTGCAAGCTTACT	alt_5925_new	0	0	0	0	0	0	0	0	0	0
ACGTTGCCGGTCGGGT	alt_5925_new	20	42	42	15	41	19	41	20	39	24
GTGACGTCCACATCCT	alt_5925_new	27	37	24	36	56	32	43	28	59	30
TATCCACCGGGCAATT	alt_5925_new	39	28	26	30	33	12	45	24	26	18
GGTGACTCGCCGCTGT	alt_5925_new	21	34	27	21	42	28	32	22	36	30
GACGTGCTCGACGATT	alt_5925_new	0	0	0	0	0	0	0	0	0	0
TTTCGCCGTGCCCACT	alt_5925_new	3	3	0	0	0	0	1	2	0	0
AACCATAAGCGGGGCT	alt_5925_new	51	82	53	54	65	36	76	53	76	45
GTTGTCTAAGTTACCA	alt_5925_new	6	11	8	3	10	4	10	4	5	2
GTCACACCCGAGATCG	alt_5925_new	27	55	34	25	55	23	41	20	43	32
TCGCGACAGGCTCAAT	alt_5925_new	7	16	5	7	11	6	16	6	14	2
CTAGCCAACGGCTGGA	alt_5925_new	0	0	0	0	0	0	0	0	0	0
GTTGGTCCGCCCAAGT	alt_5925_new	0	0	0	0	0	0	0	0	0	0
CGTAGGGGCCTCTCCT	alt_5925_new	11	34	11	10	17	12	22	14	36	9
GAGCACCGTGTCTGAG	alt_5925_new	11	14	19	14	14	8	13	12	18	8
TTTAGGTCTAACTGAC	alt_5925_new	6	21	13	9	14	11	19	5	17	6
ACTTCTGTAGGTGTCC	alt_5925_new	49	138	51	51	177	42	163	40	171	42
TAGCGTTCCGTTTCAT	alt_5925_new	0	0	0	0	0	0	0	0	0	0
CCTGGCCTGCCTCATG	ref_2239_missing	6	17	11	9	21	6	23	8	18	5
GCCGTATAATTCGGGG	ref_2239_missing	0	0	0	0	0	0	0	0	0	0
CAGGGTCCTTCAGCGT	ref_2239_missing	43	101	58	43	77	52	83	65	113	31
ATATATAAGGAACCAC	ref_2239_missing	18	45	21	15	35	16	48	25	38	22
TTTTATTCGTGGCCCG	ref_2239_missing	0	0	0	0	0	0	0	0	0	0
AGTTTAGATTACCCGT	ref_2239_missing	32	90	43	40	76	40	98	37	83	40
GTCTGTGTGCACTCTA	ref_2239_missing	0	0	0	0	0	0	0	0	0	0
TTAGTGATTTAATAGT	ref_2239_missing	66	101	55	50	127	47	119	52	144	39
ATAGTAGAATACTGTA	ref_2239_missing	22	30	34	19	28	17	37	17	33	19
TGTCTGGTTAGCTGTG	ref_2239_missing	16	34	12	15	30	14	46	8	40	25
GTGCCCAATTTGATAC	ref_2239_missing	1	4	1	0	2	8	3	3	7	0
TGTAGAACAGTTGACA	ref_2239_missing	0	0	0	0	0	0	0	0	0	0
AGCACGGACACCCAAC	ref_2239_missing	23	57	45	31	53	31	64	32	66	30
TCACGCTGGAGTGCTA	ref_2239_missing	11	18	12	7	23	5	20	4	26	9
AAAGGCACGCCTTCGG	ref_2239_missing	19	23	12	9	33	18	34	11	26	13
TCTAGACATTTAATTT	ref_2239_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTCGAAATGGTG	ref_2239_missing	11	9	13	12	10	11	11	8	11	9
CGTGGTTTTCCGACGG	ref_2239_missing	0	0	0	0	0	0	0	0	0	0
TTTATCGTACAAGTTG	ref_2239_missing	12	12	12	16	10	6	30	16	33	20
CCTCGTGCTCATTGGT	ref_2239_missing	23	54	32	16	51	30	48	28	37	21
GTTTTTGCATCGTTGC	ref_2239_missing	7	16	11	8	11	6	11	9	10	3
CGTACTGATTTGGCCT	ref_2239_missing	9	17	4	3	12	8	14	1	18	4
GATGTGCTGTATATGG	ref_2239_missing	22	35	23	16	24	17	36	17	36	23
GGTATATCTTCGGCAT	ref_2239_missing	6	12	16	14	15	19	12	1	18	8
GTTGATCTCATTTAGT	ref_2239_missing	7	23	8	4	16	8	17	6	13	8
GTAGCGGGCACTAGAG	ref_2239_missing	16	23	16	6	15	4	20	10	19	5
TGTACATCAATCGGTT	ref_2239_missing	51	68	58	48	81	42	105	38	78	52
TCGGACTAACGCTCTC	ref_6027_new	17	25	16	15	17	15	12	11	24	16
CTTATGAGGAGTTATC	ref_6027_new	31	35	24	16	41	18	50	10	54	18
GCGAATGAGTTTTTTG	ref_6027_new	0	0	0	0	0	0	0	0	0	0
GTAAGGGGCGAACCCG	ref_6027_new	4	7	9	12	11	9	11	7	18	5
GCCTATGCGACCTCTG	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CCAAAATATAATTTTG	alt_6027_new	110	156	126	134	169	124	191	111	182	87
CATCCTGTAATCATGT	ref_6027_new	4	3	1	1	1	2	7	1	0	2
TAAGCGAATCGCAGGC	ref_6027_new	6	8	5	4	5	11	16	6	16	6
CATAGGGAGTCTGGGG	ref_6027_new	19	26	8	7	21	9	27	14	32	14
GCGTACGTACCCGCAT	ref_6027_new	22	31	23	36	53	31	25	18	41	23
ACCGCCCTACACCACG	ref_6027_new	54	109	73	59	92	70	109	46	100	58
TTCAATTCTGGGTCGC	ref_6027_new	37	46	49	47	44	43	53	26	66	31
GGTTGTCGAGTTGTTT	ref_6027_new	12	15	13	9	9	7	6	9	20	5
TAGATTTCTCATCGGC	ref_6027_new	0	0	0	0	0	0	0	0	0	0
TTCCGAACAGTTATGG	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CTCTCGAAGTAGCCCA	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CGGCCCTTCAGACTTT	ref_6027_new	12	21	18	12	22	17	32	13	16	15
ACTTAGCTACATTCTC	ref_6027_new	0	0	0	0	0	0	0	0	0	0
TCCATATAAATAGCCC	alt_6027_new	43	81	75	68	111	48	105	49	72	62
GCTGATTTCCGTAGCG	ref_6027_new	72	100	77	79	142	69	118	76	126	70
CCTCTCCTTTTATCAC	ref_6027_new	17	21	16	9	21	14	20	5	16	10
TCGCCAACTTTCCCAT	ref_6027_new	0	3	1	2	0	0	1	1	4	0
GCGTCAAATCGCATTA	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CTTATTGACGCATGGC	ref_6027_new	14	6	11	2	15	10	10	8	12	9
TTATACTACCCTATGA	alt_6027_new	249	327	263	204	311	204	349	219	332	199
ACCTACACCATGCTCA	ref_6027_new	21	45	26	32	50	31	48	21	51	11
AGTGTGCTAAAGAGCC	alt_6027_new	93	117	146	89	119	94	122	87	151	80
CGTGTAAATGTTAAAA	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CCTTTTCTTAGTTTAA	ref_6027_new	4	6	4	3	5	5	7	4	3	3
TTTGGTGATTGCCCCG	ref_6027_new	15	12	13	23	33	11	34	22	40	17
ACCCAGTTTGAGTTTG	alt_6027_new	206	372	239	209	406	210	394	208	452	171
TGTAGTATTATCTCGC	alt_6027_new	15	17	7	13	26	21	22	16	23	13
ATTTTAGTTCTCACGA	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CTACCCTGAAACGGTA	ref_6027_new	7	6	8	6	14	3	3	6	10	5
GGGATCACATCAAAAG	ref_6027_new	28	37	31	29	44	37	35	21	44	23
GTATTCTTTTGTCATA	ref_6027_new	11	27	27	34	26	22	26	20	26	21
TTGGTGTCCGGGGGAC	ref_6027_new	19	18	23	22	25	18	35	16	27	14
CTAGCTCTTCTCGGTT	ref_6027_new	63	102	83	69	110	50	118	49	102	64
TGATTTCGTTCAGCGC	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CTACACTCGAAACTTG	ref_6027_new	11	21	12	14	31	11	30	12	24	13
CTTACGCGCTCTTTTT	ref_6027_new	42	48	62	52	46	49	50	47	50	50
CCCGCCCTACACCACG	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CCGGGTACGGTTGACC	ref_6027_new	0	0	0	0	0	0	0	0	0	0
CGACGGTCAAATCAAA	ref_6027_new	0	0	0	0	0	0	0	0	0	0
TCAGCAGTTTCCACTG	ref_6027_new	76	212	134	115	220	102	222	126	217	89
TTCCAACGGTCTGCGA	ref_6027_new	64	68	77	83	77	57	92	43	94	48
CACGGGGTTGATTGGT	ref_6027_new	40	60	57	33	77	36	60	44	64	33
CGCAGGGACCGAAGGG	alt_6027_new	62	81	84	69	95	67	69	66	92	80
CGATCAAGACTTAACG	ref_6027_new	21	23	19	22	25	20	30	16	35	22
TCCAAGTCGCCGATGA	ref_6027_new	2	4	5	1	6	4	4	4	2	1
AGACATTAAAATGCTT	ref_6027_new	0	0	0	0	0	0	0	0	0	0
TCAACAGTTTGCCGTG	ref_6027_new	22	50	33	20	53	26	58	38	66	17
TAAGTCTCTGATGGTA	ref_6027_new	5	0	0	0	1	3	2	1	1	0
TCGTCCATTTGACACC	ref_6027_new	38	88	56	38	95	41	71	28	103	34
TGCTCGTTTGGTATGT	ref_6027_new	16	17	13	18	43	14	31	13	22	11
TCTTGTTTGCGTTTAG	ref_6027_new	49	89	49	40	76	35	65	40	89	36
GATGGTGCATTCTTTC	ref_6027_new	17	18	21	22	24	23	15	16	28	18
AACTCCTTTACGGATT	ref_6027_new	38	67	48	41	75	37	93	45	78	44
TTAGCATTCCTTGTTG	ref_6027_new	62	105	81	71	111	70	148	65	117	50
AAAAGGGTGATATAGA	ref_6027_new	16	26	16	21	25	20	32	14	20	14
ACCACAGTGTCGGGGT	ref_6027_new	17	17	12	18	18	16	25	18	23	13
TTTATATAGACAATTA	ref_6027_new	30	62	23	27	56	22	52	14	41	17
TCTGTAAACATGGTAG	ref_6027_new	52	74	62	39	75	47	84	48	74	39
CATTGCGATGACGATG	ref_2534_fdr	91	62	98	99	62	78	45	77	54	77
CCTCTCGTCCCGCGTA	ref_2534_fdr	131	84	163	140	113	127	111	123	125	130
CTGTTCGCAGAATGCG	ref_2534_fdr	112	98	141	131	115	110	120	111	111	102
CTAGGTGCGCTCGAGG	ref_2534_fdr	92	52	98	72	70	74	70	90	92	84
TCGGTCCCTGGCGTGG	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTTTAAGGTGGCA	ref_2534_fdr	21	7	26	13	17	10	21	12	19	22
TGGCTAATCGTAGTTT	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
TTGGGCTCATTCCGGA	ref_2534_fdr	6	3	4	2	8	2	2	1	2	5
CTCGATAGTACCGACG	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
ATAGTGCCGGCGCTGT	ref_2534_fdr	51	44	69	33	27	47	29	31	37	39
TTCTCGCGGACGGGAT	ref_2534_fdr	16	7	21	11	7	12	6	13	9	14
TACACTTTATGTTTTT	ref_2534_fdr	23	16	11	20	12	19	14	16	15	17
CCGTTATTTCGATAGA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
CTAACTTTTGGCTTCT	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GTCTTAAAGTTATCTG	ref_2534_fdr	10	3	4	12	8	3	4	5	6	0
AACTTTGTCAGATCCA	ref_2534_fdr	68	55	68	83	57	71	54	64	51	78
TGGTACAGACGTAATA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
CTATTTAACGAAATAA	ref_2534_fdr	277	219	328	269	225	303	235	264	225	252
TGACTATGAGCTGATT	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
ACCCTTCTTATTTGGT	ref_2534_fdr	21	18	23	20	12	17	6	14	18	12
TCGTTTGCTTTCGAGC	ref_2534_fdr	34	20	49	28	19	32	24	26	22	25
CGTGTCGGCCCTCCGA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GGCCCTGCTACATTGT	ref_2534_fdr	8	2	22	15	2	12	15	8	8	17
TCTTTCGCCTATTATG	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTTGTCTTCGGCC	ref_2534_fdr	48	30	46	41	27	39	28	58	24	51
TGCTAGTATAACTTGG	ref_2534_fdr	25	21	39	33	21	32	25	30	35	22
TAGAGTTATACGCTTA	ref_2534_fdr	13	9	8	15	13	14	9	11	16	21
CTCTAGCCGGAGATAG	ref_2534_fdr	38	40	42	27	26	18	26	34	33	32
GGGCATTTCCTACTGA	ref_2534_fdr	150	124	178	160	129	140	122	149	107	152
ATGCGTACCTCTCTTT	ref_2534_fdr	34	29	37	29	25	31	14	24	17	32
AAAATAGTCTCGGCGC	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
CTAGCTCCAATCTTTG	ref_2534_fdr	69	68	77	65	79	64	65	79	85	70
TTCGGAAGAGGCTCTT	ref_2534_fdr	80	62	65	75	66	63	64	59	55	55
TTGGTTTATGCCGTTG	ref_2534_fdr	27	21	34	25	20	38	22	27	11	22
CTTATGAGGGTCTGTA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GATCTTCGGACAATAT	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
CCCTCCCTCAAAATCA	ref_2534_fdr	51	54	85	66	70	65	73	58	55	64
TAGTGAACGCTATAAG	ref_2534_fdr	26	29	27	43	21	29	20	31	18	12
TGGGAATTTGTACTCA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GTGCAGTCTTGGAGGG	ref_2534_fdr	51	32	59	45	35	44	39	46	30	51
TTTGCTGAGTTTGCGC	ref_2534_fdr	52	47	81	51	61	62	42	54	38	54
TCGTTATCTCGAGTGG	ref_2534_fdr	4	3	1	10	2	2	6	4	5	5
GCGGAGTCAAGCTGTC	ref_2534_fdr	31	25	39	30	16	26	17	33	35	19
TGAGCAGTGGGCTACT	ref_2534_fdr	5	3	7	5	1	11	0	5	3	4
GCACTCTCTCCGGGAC	ref_2534_fdr	3	8	7	3	10	3	14	6	8	3
CTCTCAGGATCTATTA	ref_2534_fdr	9	7	15	9	12	7	13	11	13	12
CCAATATTTCTCGAAT	ref_2534_fdr	11	16	16	10	9	5	16	6	13	7
CCGAACCTCCAATATC	ref_2534_fdr	53	53	50	47	70	57	83	35	63	41
TTACATTGGTCTATCA	ref_2534_fdr	25	19	20	17	16	20	27	17	23	19
TGACTATGTCTGGACG	ref_2534_fdr	31	20	25	26	23	33	29	21	25	28
TTTTAGTAAATTAGTC	ref_2534_fdr	58	51	69	67	48	67	51	52	61	52
GTATCACGATCTACGT	ref_2534_fdr	55	35	73	55	54	57	42	54	47	44
CGTCATGGCCGCGCCA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
ATATCGGGCACTTGTG	ref_2534_fdr	101	101	157	100	96	127	88	127	104	115
GATAATAACCATACCC	ref_2534_fdr	18	6	20	16	10	17	18	18	21	21
CCACCGCTTTTATCTA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GGACGATTTTACCTGG	ref_2534_fdr	47	28	57	62	43	78	31	58	45	59
TGTCACCTGCTATGCG	ref_2534_fdr	42	38	42	38	37	30	50	28	40	35
AATGTTGTTCTGGGTT	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GTTGAGTTCGACTATG	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GGTTAGTGCCCGACTC	ref_2534_fdr	77	45	55	48	41	45	46	44	48	56
CGTTTTCACACCTTAT	ref_2534_fdr	69	51	75	59	41	75	41	71	56	81
GAGCAGTCAATTGTTC	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
TATGCTTCGTTGGTAC	ref_2534_fdr	72	53	89	49	44	86	76	46	71	65
CTTAGAATACTTCCAT	ref_2534_fdr	119	70	134	111	80	121	82	99	98	132
CTAAGTTGATGGGTAC	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
AGCGTTCCCTATATCC	ref_2534_fdr	31	34	35	36	21	25	32	26	22	33
CCAGTGTAGAATTATC	ref_2534_fdr	7	10	13	13	2	14	5	7	20	6
ATACCATTCATTCATC	ref_2534_fdr	10	4	10	7	4	5	9	4	4	9
TGCAAGGTATCTTATT	ref_2534_fdr	62	39	60	40	40	46	25	38	54	37
ATCTATAGGGCCGTGC	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
CGTCTCAGCCTGCCCG	ref_2534_fdr	34	26	56	38	35	44	39	39	38	31
TTACTTTCGTCGGCAT	ref_2534_fdr	27	12	38	22	18	36	27	16	17	26
AGTTTTTCCGGCTCTT	ref_2534_fdr	132	91	128	103	81	105	74	96	73	115
TATTGCGCTGGCCTAA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
TCAACAGTTGGCCGCA	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
GAGGGGTGTTTAAGTT	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCCATTCTAAGGG	ref_2534_fdr	44	30	45	53	30	37	59	39	44	50
ATCTGTCTGGTACTTA	ref_2534_fdr	17	26	31	14	10	15	13	15	15	13
CTAAGACTATGCATCA	ref_2534_fdr	18	15	25	22	13	20	19	19	22	21
CGGCATACGGAATGTA	ref_2534_fdr	35	18	32	25	18	30	33	29	28	33
GGGATTCGAGCTTGTA	ref_2534_fdr	18	13	15	12	7	9	9	10	11	7
TCTTTCGAGTAATGTT	ref_2534_fdr	137	93	135	116	87	93	100	99	105	101
TGATGGACCACCTTCC	ref_2534_fdr	0	0	0	0	0	0	0	0	0	0
AGAAGGACCTAGGCTT	ref_2534_fdr	40	33	53	46	35	61	35	49	37	47
TGCTCTTATGTTCATC	ref_2534_fdr	74	53	75	63	43	75	42	55	42	52
GCCGTTTTAACGATCG	ref_2534_fdr	62	56	88	58	40	65	64	77	38	43
TATTCGATATCTCCAT	alt_2349_RC	61	53	84	68	68	72	70	51	46	49
TTGGAGTTGCACTATC	alt_2349_RC	98	83	136	128	114	116	99	126	97	80
CATTCCCACTTGGTTT	alt_2349_RC	132	98	141	137	105	120	94	100	89	86
ACCTAACGTATTTTTT	alt_2349_RC	12	11	23	22	10	19	11	13	13	20
GCAGCCCGTCCATCGC	alt_2349_RC	19	21	16	19	27	11	26	16	29	14
TGTAGTCTCACGAAGT	alt_2349_RC	2	7	7	14	9	1	6	4	16	5
GTAACACAAGGTCCAC	alt_2349_RC	14	5	9	11	13	11	11	10	11	10
CAATGTTTTGCTACGA	alt_2349_RC	74	104	128	86	94	87	99	84	84	78
TGACTTCATCTGTTAA	alt_2349_RC	44	19	45	46	26	42	26	30	17	33
TGGTGTAAGCTGTAGT	alt_2349_RC	8	5	11	2	7	7	5	10	10	1
TTTCCAGGTAGGCCCA	alt_2349_RC	23	17	39	30	31	21	23	31	30	19
TCAACGCTAAACGAAT	alt_2349_RC	137	133	176	153	122	140	126	119	134	129
TTCCCCGGGCGTCGGA	alt_2349_RC	51	72	43	49	38	35	50	44	48	31
TTTTTTCCATCTTATT	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
AGTTATTACCTAACGT	alt_2349_RC	7	8	7	10	5	8	2	13	8	5
TACCCTTCCCCTCGCT	alt_2349_RC	322	228	397	367	217	294	249	319	252	266
TTTAGGAATTCGGGTG	alt_2349_RC	9	6	12	6	6	11	2	13	5	12
TTCAATGACCGTAGCG	alt_2349_RC	17	14	36	23	25	23	17	19	14	19
CTGCTGCTAACTCTCT	alt_2349_RC	110	98	153	124	98	119	115	128	108	98
ACTGGTTAAACGATAA	alt_2349_RC	10	4	5	5	8	8	5	11	9	8
TTTGGCCGTAAGCTCG	alt_2349_RC	50	39	59	69	37	49	46	60	55	52
AAGCGATGTTTTTCGT	alt_2349_RC	15	12	24	19	8	16	7	23	20	22
GATATTACGATCTTAC	alt_2349_RC	7	5	12	11	3	9	6	9	11	5
CGAGGCTTCGGTTCTA	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
AGGGCCAACTAGGCCA	alt_2349_RC	164	135	192	175	125	164	120	151	144	129
AAGTCCACTTGTTTAG	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
GTGCTTGCGTCTTGAT	alt_2349_RC	187	193	199	230	197	194	171	192	186	211
TTGGTGGGTATATATT	alt_2349_RC	6	5	14	3	7	8	6	8	9	2
ACTACTGAATTTATGA	alt_2349_RC	91	79	123	102	99	102	85	94	120	94
CAAACGTAGTCAGTCT	alt_2349_RC	74	75	80	72	68	66	96	65	96	61
ACGTCTTTGCCTTGCG	alt_2349_RC	42	51	39	52	56	40	49	51	45	39
TACTTGGCTACCTGGG	alt_2349_RC	29	19	37	40	39	22	20	27	34	20
AGGGTTGAAGATATAG	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
CGGGGCAAATTCCACA	alt_2349_RC	221	143	226	213	150	198	172	203	171	182
TCACCCCTACTCCGAG	alt_2349_RC	37	49	47	43	35	35	51	32	36	37
CAGCTCAGGCCTTCAA	alt_2349_RC	4	18	6	11	14	5	15	12	12	7
GGCCCGTCCTACGCTA	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
CCTTATGTTTAGGATA	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
TGCTTTTAAGGCCTCG	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
TCTCAGTTATCAACGT	ref_2349_RC	38	35	34	30	32	35	41	35	38	26
AGTTTATTCAGTCGAT	alt_2349_RC	84	63	82	86	50	69	63	66	74	70
TGCCGACGCTCTGCGC	alt_2349_RC	25	42	29	28	42	34	44	21	42	27
ACGCTACCGGTTGATT	alt_2349_RC	3	12	5	13	15	5	7	4	5	6
ACTTGTACTGCGGACT	alt_2349_RC	6	3	9	4	3	2	4	6	3	6
GAGTCATAGCCGTTCG	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
TTCGGGGGAACGCCAG	alt_2349_RC	280	188	351	291	211	257	231	285	257	245
CCGTCTCTTGGTAGCA	alt_2349_RC	2	7	3	3	8	3	7	3	5	5
TACCCATGCGCGGTTT	alt_2349_RC	0	0	0	0	0	0	0	0	0	0
CATGCACCAGAACCTG	alt_2349_RC	62	53	89	78	88	58	88	86	98	75
CATCGATCGCAGTTTT	ref_5730_new	20	14	22	15	20	11	32	14	36	17
TTTGTTCGTTGGATGT	ref_5730_new	5	4	3	2	3	3	5	2	3	2
CCCGGTATAAGGTCGC	ref_5730_new	0	0	0	0	0	0	0	0	0	0
TCTGAGCATTCGTTGC	ref_5730_new	0	0	0	0	0	0	0	0	0	0
GAGCGATAAATCGTAC	ref_5730_new	0	0	0	0	0	0	0	0	0	0
TCTATCTTTTTAGGGG	ref_5730_new	35	58	49	30	46	38	76	25	57	36
AGGTAAAATGCCCCCC	ref_5730_new	36	86	51	43	91	25	113	36	107	47
GTCCCGCGGTGAAGTC	ref_5730_new	17	23	30	19	31	16	29	13	33	12
GGTTTTGATTAATGTC	ref_5730_new	0	0	0	0	0	0	0	0	0	0
ACAATCTTGGTATGGA	ref_5730_new	4	3	8	6	13	5	10	2	6	5
GATAATATACGTACGT	alt_5730_new	1	10	0	5	8	1	16	4	16	6
CTAGTACATGAAGAGT	alt_5730_new	0	0	0	0	0	0	0	0	0	0
ATATATCTGCCGTCAG	ref_5730_new	63	86	78	75	97	65	89	42	109	46
CACATTCTACATTCGT	ref_5730_new	25	37	30	29	44	33	41	20	45	24
TGCCTCGTGGTTATAT	ref_5730_new	0	0	0	0	0	0	0	0	0	0
CGTCTGGTCTGCGATT	ref_5730_new	22	38	17	14	38	16	24	10	34	20
ATAAGTGTCAAGAAGA	ref_5730_new	12	24	15	17	14	11	21	25	10	12
CATCGATTAGGTATTA	ref_5730_new	0	0	0	0	0	0	0	0	0	0
TCTTCTATAAAGCTTG	ref_5730_new	0	0	0	0	0	0	0	0	0	0
GCGCCCACATATGATG	ref_5730_new	9	10	11	11	17	9	24	10	16	16
ATACCGTATGTCATCA	ref_5730_new	0	0	0	0	0	0	0	0	0	0
CAAGTTTTCGCCCGAA	ref_5730_new	28	36	31	19	44	29	44	19	35	22
CCACTCAATATTCCGA	ref_5730_new	9	18	9	13	21	8	18	9	10	17
GTGGATCTGTTTACTG	ref_5730_new	15	20	16	16	31	15	37	19	40	18
GCCGGATGTCTGCGTG	ref_5730_new	1	7	12	6	12	8	10	10	18	4
GGTTGTTGGTACGGCA	ref_5730_new	132	240	212	135	241	150	289	113	311	133
CGAGAGTGCGGTGCGA	ref_5730_new	23	41	31	28	46	23	52	25	56	27
CTTGATTACTACTACA	ref_5730_new	10	12	6	18	27	5	19	7	32	14
TTGCATGACTAGAGTT	ref_5730_new	19	37	25	18	32	24	44	21	38	25
GATTTTTCTGTCGCAA	ref_5730_new	15	21	21	30	21	19	38	19	39	18
TATTTAACGCGGTGCA	ref_5730_new	15	27	18	18	23	21	24	17	24	9
GGAAAAACGTTCTATG	ref_5730_new	84	113	81	70	114	73	116	65	121	71
GCTCGTCGATTGTATT	ref_5730_new	0	0	0	0	0	0	0	0	0	0
GGCCTTCTGATTGCTC	ref_5730_new	22	35	28	26	33	20	30	25	41	16
CTGGATTTAACTCAAG	alt_5730_new	0	0	0	0	0	0	0	0	0	0
CCTACAAGCAATATGA	ref_5730_new	16	19	14	9	22	15	21	15	25	13
CTCTACTTGTTCAAAC	ref_5730_new	2	8	6	4	8	9	9	6	13	5
TATTCTACTTTTGTCT	ref_5730_new	19	41	16	16	21	10	42	12	34	16
TGCGGCGCGCGCCTGG	ref_5730_new	11	6	12	14	11	12	8	7	12	6
AGTTTCTTGTTTACCA	ref_5730_new	7	18	24	6	18	10	18	8	16	6
CTTTATTGCGCTTGCG	ref_5730_new	0	0	0	0	0	0	0	0	0	0
TTTTTATCGTTTGGTA	ref_5730_new	50	72	53	37	90	38	79	57	84	40
TCTGACATCCACATCG	ref_5730_new	58	128	95	69	141	71	132	79	145	95
GCTGAGCGGATTTTTT	ref_2490_negative	66	120	106	90	145	71	143	81	125	52
TAGGGCCTTATCGCCC	ref_2490_negative	1	9	6	5	13	1	7	11	11	6
CACTGACCCCATTGAT	ref_2490_negative	7	9	8	3	11	6	14	3	6	2
CAACCGATGGCGGCCG	ref_2490_negative	8	16	8	12	12	5	13	3	11	10
CCCGGGTGTACTGAAT	ref_2490_negative	7	33	11	5	36	4	41	6	25	8
TTAGTTTCGGGATACT	ref_2490_negative	10	28	13	15	21	9	33	6	24	5
GTGCTGTTTCTAGCTG	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
CCGTACCCTATCCTGA	ref_2490_negative	19	44	22	29	51	26	56	23	49	22
GGGTAAGGATCAGACC	ref_2490_negative	0	0	0	0	0	0	1	0	0	0
AAGTTCGCATCATGTT	ref_2490_negative	29	60	36	27	81	36	73	47	69	36
TTGGTTATACTTTAGA	ref_2490_negative	1	8	3	3	0	2	10	3	3	3
CCGGGCTGTTCAAAGG	ref_2490_negative	15	18	22	21	24	22	42	11	45	29
ATTTGTAACCTACTTT	ref_2490_negative	17	20	14	11	14	9	16	8	15	12
GTCTATTGATGAAATG	ref_2490_negative	21	45	39	30	55	25	35	28	51	16
CTGGCCTGTTTGACAA	ref_2490_negative	27	74	17	14	83	12	70	16	77	13
GTTTGCTTTGGTAACG	ref_2490_negative	15	22	8	4	22	5	14	7	13	7
CTTTCCTGCAAATCCA	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
CTGCGGAAGTTTATCT	ref_2490_negative	7	12	5	9	27	5	13	6	14	4
TGGTACCTACCTACTC	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
AGGTACGTGTATTTTC	ref_2490_negative	12	23	16	10	22	11	25	7	31	12
TGTATCTACTAACGGG	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
CCAACGCACGGACCTA	ref_2490_negative	28	40	30	15	49	15	53	12	61	15
GACGCTGGTCTAGCTT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TTGCGCTGCTCCGATG	ref_2490_negative	76	133	82	59	117	56	131	61	110	58
TTTGATGATACGACCA	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TGCTCCGGACTTTTTT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
ATTTCTGACTGTAATC	ref_2490_negative	16	40	19	11	47	14	39	14	41	13
ACATATTCCCAGGTCT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TCCGTTATATTATGTG	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
CGTTGCGTAAGACCAG	ref_2490_negative	22	92	31	44	116	34	96	26	109	31
TGGATACTTGGTAACA	ref_2490_negative	0	0	0	1	2	0	2	0	1	0
CAATCTTAGCATTTCG	ref_2490_negative	17	44	24	20	42	27	43	19	54	20
ACAGTAGTACCGACTC	ref_2490_negative	2	11	0	0	10	1	18	0	15	0
GTGCTGCATAGTTGGA	ref_2490_negative	17	22	15	24	32	14	42	11	39	13
CGGCGGCTCGCGGTAT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TATGAATCGGATTCAC	ref_2490_negative	5	3	6	2	7	10	6	4	11	4
TATCGTACTGGCGTGT	ref_2490_negative	0	3	2	3	4	3	12	2	9	4
ATCGTTCTTGTTAGTT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
GCGTTTTTGTAAGAAT	ref_2490_negative	31	57	25	30	42	19	45	24	51	19
AGTGAGAGTTTGGCGA	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
GCGTCGCCTCAATCCT	ref_2490_negative	35	59	33	24	59	21	58	37	40	25
TTAACGTCGGCTTTGG	ref_2490_negative	14	22	16	15	17	19	24	10	22	11
ACAGTTTGGCTTGCTC	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TTGTTAATGTTGACTA	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
CGGAAACTACTTCGTA	ref_2490_negative	18	37	23	13	27	13	43	17	41	33
TTCTAGTCTCCTTGAA	ref_2490_negative	1	5	0	2	4	0	4	0	1	7
AGTACCTTCTTATATA	ref_2490_negative	16	15	18	11	16	17	20	7	25	14
CGTTTCTCCACTATGG	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TGCCTTTGCGTTTCAG	ref_2490_negative	0	4	0	0	2	3	4	0	4	0
TGCTCATTCCTACGTG	ref_2490_negative	8	10	8	7	20	11	13	11	18	2
GCCTGCTTGCCTTTCT	ref_2490_negative	3	8	3	3	7	4	4	2	4	2
CTAATCGTTTGTCTCT	ref_2490_negative	19	18	11	14	41	16	38	12	20	13
TTATTAGGGACCACAC	ref_2490_negative	9	26	8	5	11	6	30	9	30	11
CGCCACTTTCATTTAC	ref_2490_negative	4	23	10	15	26	6	30	14	20	9
TCGTCTCAGTGGAACA	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
GCAAACTCACCAGTAC	ref_2490_negative	19	63	15	13	62	25	71	33	77	23
CGAGAGCAGAACATTC	ref_2490_negative	4	30	6	7	11	10	15	8	25	16
AGGAAAGCGGAGAGTG	ref_2490_negative	9	11	9	8	18	5	13	14	14	5
TGTCGGTGTAAACTCT	ref_2490_negative	20	37	18	10	28	9	31	14	24	10
CTCATGTTGTTTTTAG	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
AAGATCGCCGTATATT	ref_2490_negative	5	17	11	6	11	12	26	10	25	6
AATCACTTGACTATTT	ref_2490_negative	6	12	10	5	15	6	16	4	26	11
CTACTACTTCGTGTTC	ref_2490_negative	5	23	12	13	25	6	17	11	23	10
TGCGATTTAGGCAAGC	ref_2490_negative	8	15	3	2	7	9	16	8	19	2
GATGAGTCAACCTCCT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
GCCTTGCACCGGTTTT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TGTGGTGAAACCTTCA	ref_2490_negative	10	15	6	4	20	14	18	8	12	3
ACTTAGTTGCGGGCCC	ref_2490_negative	5	9	5	4	7	3	4	4	4	1
TGCTTGTCGTTGCCGA	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
AACGCTCTCATTAGCT	ref_2490_negative	23	53	40	43	71	34	68	44	61	34
CTCGAGTGCACGTCCT	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TAGCTTTCGAACGACT	ref_2490_negative	3	6	4	5	12	5	8	3	8	3
TAATACTCTGCCCTAG	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
TCTCAGGTTCATAAAC	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
GCCGGTTGATAGCACG	ref_2490_negative	0	0	0	0	0	0	0	0	0	0
AGATACTATAGGTCCG	alt_5917_new	10	5	21	9	15	8	7	13	11	8
TCTTCGCGTGCGACCT	alt_5917_new	33	23	27	26	25	33	23	23	24	29
GTCAGTTACAGTCCTA	alt_5917_new	5	7	9	2	5	2	1	4	3	7
TAGCACCTTTTTGCTC	alt_5917_new	31	27	34	32	38	35	33	35	31	29
CGCGCTGTATTGATGG	alt_5917_new	0	0	0	0	0	0	0	0	0	0
GAATTAAGACAACTCT	alt_5917_new	58	55	65	45	60	48	64	42	58	50
GGGGTTAGGAACTCAA	alt_5917_new	61	45	82	48	59	58	46	62	44	41
ACATCCTTATCGAGCC	ref_5917_new	509	402	549	416	419	414	490	431	480	435
CGTTGGTCTTGATTTA	alt_5917_new	18	18	19	13	22	16	15	23	21	17
GTTGAAGACGCATCGG	alt_5917_new	26	9	30	18	9	15	9	14	14	12
TGAATTGGCCATCATC	alt_5917_new	75	63	79	57	52	46	59	39	44	63
TTTCGTTTTTGAATTA	alt_5917_new	0	0	0	0	0	0	0	0	0	0
ATGATGCTCGGACACA	alt_5917_new	132	105	134	101	69	118	86	128	126	108
ATCTACTCCTGAAAGT	alt_5917_new	132	114	113	105	120	90	99	96	94	100
GCGCGAAAGGCGTTGT	alt_5917_new	31	41	39	21	33	12	31	22	32	25
TCTGGGTGTGCGCAAT	alt_5917_new	12	13	9	9	11	6	7	10	14	2
TTATCATCCTGCTACT	ref_5917_new	14	35	25	23	18	26	27	23	23	23
TTATCAAATTCGTACA	alt_5917_new	26	11	30	17	11	21	10	12	20	17
TGGGTGAGTCCTGTTC	alt_5917_new	52	40	76	57	31	50	38	47	61	53
TACACGTTTTTCAGGA	alt_5917_new	9	0	3	8	3	1	4	2	4	4
GGTTTTGTCTCATTTC	alt_5917_new	25	17	34	29	11	22	14	13	15	15
AGGGAATATAGTGAGT	alt_5917_new	0	0	0	0	0	0	0	0	0	0
GAGGAACTGTTACGTT	alt_5917_new	10	4	10	9	6	6	9	10	9	9
GATGATCTTGGGTCCA	alt_5917_new	0	0	0	0	0	0	0	0	0	0
GTATCGATTGTCCCAC	alt_5917_new	0	0	0	0	0	0	0	0	0	0
CATAGGCCTCCCGTAC	alt_5917_new	28	29	22	30	24	26	23	32	22	22
GGTTCCCGGCTGGGAG	alt_5917_new	40	18	39	23	26	32	21	26	25	34
AAACTCGCCAGATGGT	alt_5917_new	56	39	68	47	35	60	27	51	38	74
ATATTCCGGAGCACTA	alt_5917_new	369	288	488	340	311	383	304	353	303	323
TCAAGTACACAGGTTC	alt_5917_new	175	133	208	121	143	165	172	157	153	157
TATTGTATGAGGCATG	alt_5917_new	0	0	0	0	0	0	0	0	0	0
AGCATCGGCATTTTTT	alt_5917_new	0	0	0	0	0	0	0	0	0	0
TATAGTTTGCTTTGTT	alt_5917_new	56	61	94	66	54	70	53	59	56	69
TAGGACATCCGCACGT	alt_5917_new	18	19	23	23	5	16	10	11	12	14
TAGTGTTAGTGAAGGT	alt_5917_new	50	42	59	43	35	43	48	41	40	38
CTAGCGCATGGGGAAG	alt_5917_new	83	95	114	82	84	60	86	63	89	93
TTATATCAGGGACTGC	alt_5917_new	0	0	0	0	0	0	0	0	0	0
TTCCGTGCCCTATTTG	alt_5917_new	44	31	67	57	48	57	41	56	50	49
TGTGTCGGAGATTGTT	alt_5917_new	0	0	0	0	0	0	0	0	0	0
TTTGAATAACCTTCAA	alt_5917_new	0	0	0	0	0	0	0	0	0	0
AACTTATCCGCTGGAG	alt_5917_new	0	0	0	0	0	0	0	0	0	0
TTAATTAAGGGGAGCA	alt_5917_new	167	148	181	166	131	170	138	162	141	171
ATTTTTGCCGTTCAAA	alt_5917_new	352	263	408	284	278	355	305	337	316	327
CTCAGCTTAATCGGGC	alt_5917_new	20	18	42	23	30	18	26	18	20	17
GACGATGCATCGGTCA	alt_5917_new	13	11	10	17	4	11	11	9	4	9
TGGTGGTTCGGTGCCG	alt_5917_new	33	29	47	43	31	48	37	51	31	34
GAAGGCCTGCTTATAG	alt_5917_new	0	0	0	0	0	0	0	0	0	0
ATTAAGCCCTGGTACT	alt_5917_new	0	0	0	0	0	0	0	0	0	0
TATTAAATAACGGGAT	alt_5917_new	47	37	40	42	34	26	33	40	27	35
CCCTTCTTCGTCAACC	ref_5917_new	19	20	33	26	12	21	23	19	14	27
GAGAGGGTTTTGCATG	alt_5917_new	10	9	19	8	10	12	11	17	18	14
GTACCTCTGTCATCTG	alt_5917_new	28	20	26	13	19	29	26	23	27	20
CGTGGGGCGACCTTCG	alt_5917_new	92	72	120	90	73	101	80	86	54	82
GGGCTATTACACAATG	alt_5917_new	4	3	7	6	4	10	3	3	6	4
ACTGTGCAACGTAAAC	alt_5917_new	73	81	99	81	91	78	89	87	83	75
TCCCATGTTTTGGTGG	alt_5917_new	34	14	22	17	11	24	19	17	27	20
CAATGATCTCTGCAGG	alt_5917_new	0	0	0	0	0	0	0	0	0	0
TACTTAACTTAGTTAC	alt_5917_new	9	4	3	3	6	3	12	3	6	4
CGGAGTCCGGGATCTC	alt_5917_new	109	84	101	96	87	117	92	70	89	97
AGGCGTTTTAGTACAT	ref_5962_new	118	94	175	137	114	130	96	114	111	102
TGGACCTTTCCGTATG	ref_5962_new	37	37	40	41	40	36	48	48	37	35
GTTAACCTGTGGGCAA	ref_5962_new	0	0	0	0	0	0	0	0	0	0
AAACGACGTATGACGT	ref_5962_new	104	78	106	109	69	73	80	81	99	94
TGGGGCGCTATGGTGG	ref_5962_new	0	2	0	1	2	4	4	4	1	2
CTAGGTGCGCTGTCTG	ref_5962_new	38	19	26	25	34	37	29	29	41	23
CGCCACGAGGGAGATC	ref_5962_new	92	85	127	100	102	111	116	94	99	92
GATATCATTAAACCAC	ref_5962_new	68	67	72	62	69	54	74	63	70	65
TGATCGGGGGTGGCCC	ref_5962_new	65	62	66	65	67	72	67	53	90	73
ACATTCGGCCTCCGCC	ref_5962_new	434	378	527	502	454	464	459	442	436	438
ACAACACACGCATACT	ref_5962_new	0	0	2	0	2	2	2	6	1	2
ACTGACTGGGTTGCAG	ref_5962_new	0	0	0	0	0	0	0	0	0	0
TTGTAAATTTCCGTGC	ref_5962_new	19	16	18	11	12	17	13	9	10	11
ACGTCGATCAGGCGTT	ref_5962_new	17	29	17	14	28	22	30	16	36	12
GAACATGCCCACTGAA	ref_5962_new	89	96	128	113	80	89	67	86	91	76
GTGTAATATTAGGGCT	ref_5962_new	0	0	0	0	0	0	0	0	0	0
CTGCCCTTTCCGCTAT	alt_5962_new	62	55	73	68	45	68	58	56	53	42
TGGTAGAATGTATCGG	ref_5962_new	65	30	73	39	52	75	79	71	43	57
AGTGCTTCTTAGGGTC	ref_5962_new	13	8	10	7	11	8	6	10	10	14
CTGGTTCTCATCGTCC	ref_5962_new	7	6	11	5	8	6	2	3	3	6
CGGGCCTCGCTCAGAC	ref_5962_new	0	0	0	0	0	0	0	0	0	0
AAGGCCGTATCTGTCC	ref_5962_new	22	17	14	24	29	24	13	18	25	16
GGCAATCTCATAGCAA	ref_5962_new	170	124	250	178	154	185	132	137	148	153
TTGGGTAAAGTAGCGG	ref_5962_new	18	23	21	13	24	14	16	13	23	12
TCAGGTGCTCCTTTCA	ref_5962_new	36	40	59	40	45	42	37	31	44	36
ACCTCTTGTCCCTTCA	ref_5962_new	33	42	43	30	27	42	50	35	36	41
TGCCATAGTTGGTGAG	ref_5962_new	0	0	0	0	0	0	0	0	0	0
TTGAGCAGTTCGGGGC	ref_5962_new	0	0	0	0	0	0	0	0	0	0
ACCTGAGCATAGCAGT	ref_5962_new	35	15	19	29	20	14	22	24	27	22
CGGTCTGCATACGCAA	ref_565_reverse	55	93	71	70	87	60	81	54	97	59
TCGAGCAGTGAACTGC	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGCTTATATTCAG	ref_565_reverse	51	71	64	53	68	56	77	72	69	45
GGCCCCACTAATCAAT	ref_565_reverse	17	25	41	23	19	27	28	24	29	21
AAGCCTGCCTAAAGAA	ref_565_reverse	12	12	19	13	14	12	17	12	30	13
TCGTGGGTAATCCATA	ref_565_reverse	36	20	18	21	21	18	23	28	19	25
GAACATGTTTTGTGTG	ref_565_reverse	6	8	4	0	7	4	11	4	10	8
CGAGACAATGCTCTCA	ref_565_reverse	55	52	56	51	38	47	46	40	46	45
CCCCCTCATTTAACTT	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCCTTATGATTTA	ref_565_reverse	37	59	38	43	61	30	49	40	60	34
TTTGGACATCGATCAA	ref_565_reverse	29	41	28	28	29	30	43	17	33	22
GAAAGACTGGGATCGC	ref_565_reverse	26	23	42	31	34	22	17	34	28	23
CAACTAATCCTGTTTT	ref_565_reverse	16	37	26	18	27	17	26	24	28	14
CACAATGGGGCGCTGG	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTTTGGGAAAAG	ref_565_reverse	35	46	45	35	49	39	45	40	66	29
CGTCTCAGGTGCAAGA	ref_565_reverse	29	43	39	31	36	27	45	32	37	20
AGGCTGGTTTTAGCAT	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
AGCGACCGGGTCCAAC	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTTTTAGTTGTGC	ref_565_reverse	3	7	6	2	8	5	3	3	5	4
CTCGCTATAAACCTGA	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
TAGTCAATGGAATATC	ref_565_reverse	25	28	13	23	26	20	28	17	35	13
CTCTCCCTGTTTACTG	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGTCGGACTTATT	ref_565_reverse	42	64	44	52	48	40	46	44	73	42
TGGCACCAAGTTTTGG	ref_565_reverse	15	14	19	8	10	10	19	10	22	15
TGTAACCGGTAACATG	ref_565_reverse	2	0	3	3	4	5	11	5	12	7
GAACCGGTTGAGTAAA	ref_565_reverse	86	125	95	100	131	103	128	79	137	63
GCGATGCTTATTATGT	ref_565_reverse	25	30	27	13	30	18	22	18	27	15
TAGCTTCTCGGGTTGT	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
CCTTCCACGCTACATT	ref_565_reverse	11	13	14	12	13	10	12	10	11	4
GTGTAAGTGTCGTGTG	ref_565_reverse	14	30	19	12	17	5	17	17	25	15
CGCATTCCTGTGCGTG	ref_565_reverse	28	29	39	33	58	28	32	22	51	34
GGTTTACGCAGGACTC	ref_565_reverse	47	55	56	56	64	50	69	47	64	40
AGTGAATAAGGTCACA	ref_565_reverse	11	21	16	11	15	15	16	10	16	15
ATCTATAGGTCTTTAG	ref_565_reverse	12	20	24	20	29	20	24	18	26	10
GCTCCTTTTTATTAAC	alt_565_reverse	142	153	160	123	129	135	158	94	170	117
TGTTTCAGTTATCTAA	ref_565_reverse	8	9	18	5	9	4	8	11	7	12
CATCAATGGCCTTCTT	ref_565_reverse	67	96	86	75	85	61	91	78	85	71
ATAGCATCTTTAAGTC	ref_565_reverse	32	35	31	26	19	25	18	15	23	16
AAGTGTGCGATTTTTA	ref_565_reverse	32	42	43	27	35	42	50	33	54	39
TGTACCAGGCTTCCCG	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
TCTATTTACCTAGCAT	ref_565_reverse	43	64	46	45	47	26	55	22	55	38
GGTCGAGGCCTTTCGT	ref_565_reverse	165	193	219	185	195	171	180	170	245	154
TTTGGTCCAAATGCTT	ref_565_reverse	38	61	43	46	53	51	33	37	67	38
TATGCATGTAACCATT	ref_565_reverse	91	103	123	112	101	84	118	111	102	92
TTCTATGACGTATCTA	ref_565_reverse	6	14	10	13	9	4	14	7	14	6
GTGTAACTAATTCCGA	ref_565_reverse	22	22	25	30	33	22	23	24	26	19
TTATGTCGTTTTAGGA	ref_565_reverse	3	3	5	3	10	5	2	6	8	1
CGCGCCTGTCTGAAAC	ref_565_reverse	2	3	1	3	1	1	4	1	5	1
GACTAATAAAAACATC	ref_565_reverse	0	0	0	0	0	0	0	0	0	0
TATGTGCATAGTTCTC	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TAGGTTAAACATCGAA	ref_6101_new	0	0	0	0	0	0	0	0	0	0
GGAAGGGCTGCTTCAA	ref_6101_new	0	0	0	0	0	0	0	0	0	0
CGACTGTTCGCACCTG	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TGGGTCTTATCTTTGA	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TTACGCACTTGTCTCG	ref_6101_new	1	3	0	2	8	1	4	2	5	2
TGTCCGACTGGCGCGT	ref_6101_new	2	12	2	6	8	7	5	7	4	3
TTATAGACTCGTCCGT	ref_6101_new	3	7	3	0	3	0	5	1	4	2
TCCGATTGTGTGTTAT	ref_6101_new	25	50	28	19	33	22	38	17	43	28
CAGAAGGTGTATAAGC	ref_6101_new	0	0	0	0	0	0	0	0	0	0
GCACCACGAGAGACTT	ref_6101_new	22	17	19	30	22	14	44	19	44	10
TTCTGTCACTACCTTT	ref_6101_new	2	6	6	5	14	6	11	3	9	5
GCGCCCGTAAAGAAGC	ref_6101_new	5	9	11	8	8	2	12	13	11	7
TACTTTCGGATAGTGT	ref_6101_new	0	0	0	0	0	0	0	0	0	0
AACGTAGTATATAGGA	ref_6101_new	2	10	4	2	6	3	6	5	8	2
TTAGTGCGCAATTGAT	ref_6101_new	19	25	26	18	39	19	25	12	35	15
GGTATCCGCGGGCTGC	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TGCCCGGTAGGGTCCT	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TATCCCCGCAGAACGG	ref_6101_new	0	0	0	0	0	0	0	0	0	0
GTTTTAGGTACTAATT	ref_6101_new	0	0	0	0	0	0	0	0	0	0
ATGGGCTAGCAATGTG	ref_6101_new	4	13	6	2	9	7	14	5	9	3
CTCTAGTTCGCACCGT	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TTTTCCCAATACGGGC	ref_6101_new	0	3	0	1	1	0	2	1	1	2
CCAGTCCCTTGCCGCG	ref_6101_new	0	0	0	0	0	0	0	0	0	0
GGAGTTAGTGGAAAAC	ref_6101_new	21	59	26	26	42	19	45	31	40	30
GCCAGTTCGCTGTATG	ref_6101_new	6	7	4	4	5	2	10	4	4	3
GTAAGCGACAGTGCTA	ref_6101_new	19	21	17	9	12	9	15	7	9	7
GTGAAAACTCTAGCAA	ref_6101_new	0	4	7	4	5	2	16	2	9	3
TGACTTTGAATCTATC	ref_6101_new	1	1	0	0	2	3	1	1	2	1
AGGGCATGATTATATA	ref_6101_new	9	23	15	13	20	10	19	14	19	7
TCTCTGTAATCAACAT	ref_6101_new	21	18	18	14	21	20	17	6	21	12
TTTTCCGGGGCCACTG	ref_6101_new	4	12	1	1	7	8	9	5	5	4
CTTGTAACGTGGCTAG	ref_6101_new	13	9	21	20	24	18	14	21	28	20
CTCGAAGAATGTAGTT	ref_6101_new	61	87	90	62	105	66	83	62	101	68
GGCTCTATGTTAGTCG	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TATATGCCGGTTGCGG	ref_6101_new	7	12	6	6	1	2	5	5	12	2
CTGCCTATGTAGGAGG	ref_6101_new	2	0	1	1	0	0	1	0	0	0
AACCTGGCAGGGCGTG	ref_6101_new	4	5	6	4	6	1	5	3	5	1
GGTGTATCGTGTAAAT	ref_6101_new	2	8	6	8	11	10	10	9	10	8
GAGAATTAATTGGAAT	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TATTCGAGGAACTGTT	ref_6101_new	0	0	0	0	0	0	0	0	0	0
ATACCTGGTTGTTCCT	ref_6101_new	4	4	9	2	8	3	8	2	6	1
TCTCTTTCGTTCCGCA	ref_6101_new	4	2	4	3	1	1	6	3	5	1
GGTTCGCGCGGTGGCT	ref_6101_new	17	11	20	7	28	19	22	10	31	7
TATAGAGCGAGTTCCA	ref_6101_new	2	7	6	1	11	5	6	2	6	1
ATTAAGAATTATGTAC	ref_6101_new	10	16	13	9	14	8	20	9	13	18
CTGTCGTGGGATCGTT	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TTTGGGCCATTCGTCC	ref_6101_new	1	6	1	0	0	1	0	2	1	1
GATTGGGTGCTCTGCC	ref_6101_new	0	0	0	0	0	0	0	0	0	0
TCCCTATCCGTTTAAT	alt_2575_missing	8	1	1	2	3	2	8	4	0	4
TTAGGCCCGCTGGGTC	alt_2575_missing	57	45	54	69	52	53	39	44	49	46
TGGCATCCGGATGGTA	alt_2575_missing	31	24	34	22	22	26	20	21	29	19
CAAGTACTCTTGGTGG	alt_2575_missing	32	26	28	30	29	25	25	30	37	30
TTTGCGTCTGTTGGTT	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
GATACGTGCTTTGGGC	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
TGAGTGCGGTCGTGGA	alt_2575_missing	13	20	13	19	15	18	28	14	18	15
TCAGAAAGTTTCGTTT	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
GTATAGAAAGGTCGGC	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
ACCACCCTGGTGTCTA	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
CTAACACGGGTCTGCA	alt_2575_missing	11	15	13	13	16	18	12	9	8	20
ATTTTTCGTTATAGTT	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
TCGAAATACGATTCTG	alt_2575_missing	31	17	29	28	17	30	32	43	22	27
CGTAGCTCTGCGCGTC	alt_2575_missing	17	39	25	26	46	22	37	24	51	15
TGGAGCATGCGTCGTG	alt_2575_missing	10	10	13	9	14	15	8	15	10	10
TCTCGATTTTGAGTGC	alt_2575_missing	36	33	33	32	27	34	37	23	25	22
TCCTCGTAAGTCACTT	alt_2575_missing	4	4	6	9	8	8	7	9	3	4
GAGGCCGAATTGCTCC	alt_2575_missing	16	7	13	11	15	11	10	7	11	6
CCACCGAGTATTCTGC	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
TTTAGGCGGTGTATTC	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
TTCAAAGAGCATTCAG	alt_2575_missing	173	182	211	175	172	176	183	170	188	157
CCGAACAGTATCTAGC	alt_2575_missing	27	28	24	32	31	24	29	33	40	23
ACTATATTGCCCTAGC	alt_2575_missing	19	20	38	30	34	27	26	28	35	25
GATGTTGGGGCTTGGC	alt_2575_missing	22	21	31	24	12	10	17	11	17	15
CAGATCCGCTTACGAC	alt_2575_missing	2	6	8	5	5	6	2	2	8	2
GCTCTTACGCTGTTAG	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
GCTCCGAGTAACAGAC	alt_2575_missing	52	36	41	40	36	43	37	27	28	35
AAATCGCACGTTTCGC	alt_2575_missing	9	10	15	10	8	5	10	5	10	6
TTTCAAGCAGTTTTCC	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGGAATGGTCAA	alt_2575_missing	52	62	67	70	52	33	55	47	36	42
TTCTTTTACTCGGTCC	alt_2575_missing	0	0	0	0	0	0	0	0	0	0
GTTGCACCCCCCATGC	alt_2575_missing	10	25	15	18	28	13	28	6	38	10
GAAAAGATTATGCGTC	ref_4700_missing	8	15	14	10	4	13	17	7	17	6
ATGATGCGCTCACTCA	ref_4700_missing	12	19	28	18	29	16	27	20	25	15
TCTATTGTTAGTTGGT	ref_4700_missing	12	45	20	18	44	31	44	11	52	14
ACGCAACTCATGAATT	ref_4700_missing	116	205	166	119	204	113	196	130	186	126
CCTGCTCTAATTGTGC	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
CTAGGGTCAGCCGCGT	ref_4700_missing	71	149	120	86	125	66	154	96	168	71
GGTATGTAACTATGAT	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
TCTTTACGGGCCAGGA	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
TAGGTTTTTGTATACG	ref_4700_missing	14	17	13	10	17	15	19	15	25	5
GTCGTCTTTCGTGTCC	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
TTGTACCCGCCTGTTT	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
ACTTTGTATACCCCAC	ref_4700_missing	69	52	41	42	51	38	68	49	53	47
CGCAAATTCGGCATAT	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
TTGCTTGACGTAAACA	ref_4700_missing	78	112	111	102	109	68	100	77	116	61
GCCTTGGACACGTCCT	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
TCATCTACCACAAGGG	ref_4700_missing	4	1	4	1	2	5	7	2	3	4
CACCAAGTGCACATGC	ref_4700_missing	11	24	16	9	18	8	14	10	25	4
GCAACTGCTTGGAATG	ref_4700_missing	0	0	0	0	0	0	0	0	0	0
TCCATATAGTATGCGA	ref_4700_missing	26	19	15	18	28	17	18	12	28	20
CTCGGATTCTGAATCT	ref_4700_missing	13	11	9	11	10	9	16	6	18	8
CCCGCTCAGTCAATCT	ref_4700_missing	4	12	14	5	26	9	26	11	27	12
TGTTTACTTTCGTGGA	ref_4700_missing	18	17	22	16	21	14	26	15	26	9
ACTGATAGCACTCACC	ref_4700_missing	0	5	3	0	8	1	15	1	13	1
GTCATGGCTATGGGCC	ref_3659_missing	16	43	20	21	46	13	41	21	41	16
AGGGACAAAGCCAGTT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TCGATATCGTCAACTT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TACAATTTACAGTCCT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TCTGTCCCGTGTGGCT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
AATTGGTACCTGTGCA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GACATAGGCTTATGAA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TTGTAAGGGGTGAGCG	ref_3659_missing	32	55	32	32	68	18	62	32	71	25
TGGTCTGGTTACGGTT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
ATGTCTATCCAACATG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
CCCGTTCAGTACAATG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
ACAACCGGCAACGTGA	ref_3659_missing	8	4	3	1	3	3	6	2	10	1
GATACCCAGTATTCAC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
ATAGACAGTCATATAC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TGTATAGGGTACTCTG	ref_3659_missing	0	3	0	3	2	1	7	3	11	0
CTCTCACAAACTCGTG	ref_3659_missing	3	4	2	1	2	2	5	0	1	9
TTGCAGCATGCCGAAA	ref_3659_missing	1	10	5	5	6	1	8	3	8	3
CCATTAACTATGGTCG	ref_3659_missing	1	7	3	1	11	2	12	2	5	5
CCTTTGGTTGGCGGTT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TGGAGTAGTTGGTCCG	ref_3659_missing	5	24	11	11	28	11	16	10	20	16
TGTCTTAATTGCATGC	ref_3659_missing	17	37	22	16	38	28	45	21	47	22
ACACAATCGCAGGCTT	ref_3659_missing	5	12	1	6	12	2	14	4	14	2
AATAGCCGATGGCGCC	ref_3659_missing	6	14	9	3	16	3	21	7	12	6
TGCCAGTTTCGTTCGA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GAGCGGCATAACAGCG	ref_3659_missing	6	38	27	14	27	15	40	10	38	18
AACGCTGCCTAACAGC	ref_3659_missing	3	2	5	9	8	1	7	1	12	4
CGATTGGAAGGCCGTC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GTCTTATTTGGTAGTC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
AGGTTTCTATGCCGAT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GGTGAGATAGCTGATT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GTTTCAAGAGACTCCG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GACGCTCAGTTTATGC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
CCGAAGCGTTCCTGCT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GCCCCTCTTCTCCATA	ref_3659_missing	26	43	29	23	50	25	46	21	50	17
GTCTTGAGACGTCGCC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TCTGCACACTCCTTGG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TCCTGATCTGATAGTG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
CCGCTTTACGCCAGTA	ref_3659_missing	1	7	5	4	11	1	5	5	6	3
GATTAGTTACATAGTC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TGGCCAATGCGGCATA	ref_3659_missing	4	19	7	4	14	4	11	6	11	5
TGTATAGTCCCGTACA	ref_3659_missing	2	8	0	2	5	1	5	1	5	7
TGGTCCAATTGACTCG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TACCCTAGTACCTCTT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TTACCATGAGGTGTCG	ref_3659_missing	1	2	3	1	5	4	4	0	5	0
TGGGGTAAGGCTATAA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
ATACCTTCACCAAATG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
AGGTACGGACGCCGTT	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GTTGCATTATTGTTCT	ref_3659_missing	5	6	8	3	8	4	11	3	7	3
TCGGGGTTGTTGTGGA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TTCATGTCCGGGTGTA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GTTATAATGCTCCATG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GACAGTTCTGGTCATA	ref_3659_missing	3	11	6	7	7	4	9	3	13	2
TGGATTTAACATCGTA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
TAATACAGATCGAATA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
AACATTTCTCGGGGCC	ref_3659_missing	0	0	0	0	1	0	0	0	0	0
AGGGTGAAATGCATAG	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
CCTATTAACGCCAGTC	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
CACCAAACTCTCCGTT	ref_3659_missing	5	10	6	10	13	5	11	6	23	2
ATTAGTTACGCACATA	ref_3659_missing	7	14	7	3	11	4	17	8	31	10
AGGTCGGAATTCGCCA	ref_3659_missing	0	0	0	0	0	0	0	0	0	0
GTCATACGCGCTGCAT	alt_556_fdr	28	26	32	33	21	14	8	20	17	25
GTAGGAAAACTTCGGG	alt_556_fdr	20	30	37	30	31	28	35	30	20	21
CCGTTTTTCGGGCACG	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
TGACCTAATTAATTTA	alt_556_fdr	8	7	11	10	3	8	9	10	4	4
CGATGGTCTCCGGCAT	alt_556_fdr	45	29	42	42	41	32	38	54	35	38
TTAGTCCGGGTCCATC	alt_556_fdr	46	47	49	59	51	57	54	39	50	45
ATCCCTTGGGTAAGGC	alt_556_fdr	245	208	287	260	185	227	204	263	209	203
TGGACTGATGTTAGGT	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
TGGATCTAGGTGATCG	alt_556_fdr	26	20	22	21	30	19	18	25	29	14
CAAGTCGTTTTACGAG	alt_556_fdr	49	42	50	52	53	25	47	35	55	40
GCTTTAGAATCGAAAA	alt_556_fdr	155	98	177	171	117	143	141	152	126	132
GGATGATGTGGCAATT	alt_556_fdr	1	16	10	8	7	8	13	14	13	7
CCTCTCCTACCCTATG	alt_556_fdr	42	60	73	62	75	49	76	44	84	40
TTACTACTGCCTGGGA	alt_556_fdr	63	52	57	59	45	49	51	52	50	50
AGTGCAGGGGTCTTGA	alt_556_fdr	165	123	197	158	116	153	139	136	164	119
AGAACCATCCCCGTTC	alt_556_fdr	13	49	19	32	63	31	54	28	62	14
GATGCCGGTTATAGGC	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
GGGGTACTTGTTAGTG	alt_556_fdr	55	67	45	61	72	58	68	50	62	43
TTTTTTTTCCCACGAG	alt_556_fdr	14	14	21	19	12	19	12	10	12	25
TAATTGCATCAGTACC	alt_556_fdr	104	99	153	127	109	115	122	102	131	105
AGCAAGGCGCACATCG	alt_556_fdr	15	13	21	18	23	20	18	22	23	18
CCTGTCATAGGGCCAT	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
CGGCACGCCACGGGGC	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
CACTGTATCGGACTGC	alt_556_fdr	11	12	15	13	8	5	16	12	14	7
GCGCTGTATCCCGGCT	alt_556_fdr	45	58	79	64	68	62	79	67	61	36
TATTCTCAACGATGGG	alt_556_fdr	88	83	79	82	109	63	63	73	75	82
ATTAAAGTCGCTCTTA	alt_556_fdr	126	120	179	138	98	136	114	105	96	117
TCTAATAAGGGCCTCC	alt_556_fdr	149	109	167	132	110	125	135	118	120	107
CCGTTTTTCGGGTACG	alt_556_fdr	40	31	50	36	50	44	26	33	48	36
TCCTCGTTCCCTATAA	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
CGAATCACCGTGTTAC	ref_556_fdr	191	230	218	206	274	169	248	185	254	148
CTCAGGGATATCTCGC	alt_556_fdr	28	38	38	30	34	42	38	30	51	31
GTGGCCTTCGGTTGCG	alt_556_fdr	30	27	33	35	34	42	24	38	39	33
ATGAAGTTCCAGTTCG	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
AATATGCTTGCCGGGT	alt_556_fdr	0	0	0	0	0	0	0	0	0	0
GTACTTTAATTGTACT	alt_556_fdr	70	59	99	77	81	80	66	66	83	82
TATCATGACATGACTA	alt_3746_RC	13	21	20	5	13	12	8	8	16	18
GTATTGGTTTGATCGC	alt_3746_RC	12	33	26	29	36	24	32	25	40	15
TGGGACGGCACGGTCA	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
TGGTACATCGTTCATC	alt_3746_RC	7	10	12	3	18	8	13	12	10	8
TTCGTACAGTCGATAC	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
GCACGGATGGGTCAGC	alt_3746_RC	12	15	17	9	31	10	20	11	19	10
ATTTACCTTATTAACT	alt_3746_RC	16	43	21	25	55	27	54	28	41	25
AGGGTGAGCTTACATG	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
CTACCTAACTTTTAAA	alt_3746_RC	44	72	44	38	56	27	62	36	65	29
CGCCTGTCGTTTTCAT	alt_3746_RC	12	13	9	12	16	8	9	10	15	8
TTTGTATTTCTTGCTT	alt_3746_RC	112	146	126	83	77	89	146	67	136	99
GAGGTATCGAATAAAA	alt_3746_RC	18	13	14	5	12	15	29	12	12	6
TTCGTCCTATTGGGTC	alt_3746_RC	44	68	57	39	72	38	69	34	76	37
CATCCGGGGCAGTCTT	alt_3746_RC	3	6	3	5	6	1	9	5	6	2
GCCTCCGGCCGCAGAC	alt_3746_RC	6	20	4	13	22	9	16	6	30	4
TCTAGGCATTTCCACG	alt_3746_RC	12	33	30	23	29	22	31	23	30	25
CAGTTTACGTGTTCGT	alt_3746_RC	119	196	121	116	217	99	201	88	184	107
CGCCCTATTGGTTTGA	alt_3746_RC	24	48	39	27	51	31	52	33	46	35
GCTGGGGTGTGTCGGA	alt_3746_RC	12	24	11	13	22	18	19	8	37	14
GAACACCCCTACCATC	alt_3746_RC	23	48	44	35	49	35	39	34	62	29
GGTGGCCCCATGGATA	alt_3746_RC	29	37	31	26	40	35	47	30	41	28
TATTGACGTCTGGCGG	alt_3746_RC	13	27	25	7	20	8	28	10	27	15
CTCACACATTACTCGC	alt_3746_RC	62	135	82	57	169	64	202	53	176	63
GTGCAGCCTGCTCTTG	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
GATGTATAATCTTTCT	alt_3746_RC	5	14	9	5	4	2	4	5	7	4
CTAGTTCCGGTACTAA	alt_3746_RC	18	54	34	26	67	25	68	31	50	27
TATACCTAGAATCTAC	alt_3746_RC	3	3	1	2	2	1	7	2	2	5
ACTCTGTCGTGCTGGC	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
GGGGGGCTTCCTTTGG	alt_3746_RC	21	15	17	8	20	16	28	11	15	10
ACATCGCCTTATTTTT	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
TCGTGCCTACCCTCGG	alt_3746_RC	30	61	43	36	36	35	39	27	58	22
TGCCGGTGATAATCAA	alt_3746_RC	61	79	68	66	116	51	89	67	97	70
GCCTGCTCCCTTGGCA	alt_3746_RC	8	9	8	11	15	18	14	9	21	4
ATAAAAGGTCCCATAG	alt_3746_RC	7	8	5	8	9	6	10	3	9	6
ATTGGGATGTCAGTGA	alt_3746_RC	36	57	33	47	64	35	52	44	53	37
CCCAGTAAATCCAAAC	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
TCGCCGTATCTCCGTG	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
CATAGTAGTAAGCCTT	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
TGCGGCGTTGATTTCT	alt_3746_RC	82	98	87	77	126	71	128	94	104	73
TAACACTACTCGGTTA	alt_3746_RC	3	7	8	3	5	3	17	8	5	6
TTGTGGGTTTTTCCCT	alt_3746_RC	2	4	6	1	8	5	13	2	8	3
ATGGCCTCGCGGTGGA	alt_3746_RC	33	40	41	30	64	33	53	35	55	36
ACGCTTGCCTTGAAGA	alt_3746_RC	11	19	10	13	18	9	15	7	15	6
AGGTGCTTCACGCTGA	alt_3746_RC	36	64	51	26	62	47	70	38	61	21
AATTCTATGTGTTATC	alt_3746_RC	35	45	30	23	35	32	41	15	48	31
TGCGGGTCTCTTCCAC	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
CGTCACTGTACTTGGT	alt_3746_RC	9	12	18	5	11	11	13	10	29	9
AAAATTGAGGGCTTTT	alt_3746_RC	10	9	7	4	4	11	3	4	6	3
GAGTTCTATTTCACTC	alt_3746_RC	34	50	51	25	64	24	56	43	74	31
GCTGGACTCCGCGTAT	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
TCGGTTCCACAAACTC	alt_3746_RC	124	185	148	120	176	109	176	103	202	107
GAATTAACCAAGTAAC	alt_3746_RC	95	136	150	102	167	108	164	100	185	89
TGCCTCGGTGGTTTCA	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
GTCCCACTGCGATCCT	alt_3746_RC	1	7	8	5	8	3	8	5	10	2
GCCCAATAGCCGAAAG	alt_3746_RC	98	114	115	109	113	88	141	86	154	112
TTGCCCGGCCAAGACT	alt_3746_RC	7	10	12	8	18	5	13	6	10	11
GCCATTCATGTTTGCA	alt_3746_RC	9	16	11	12	14	12	14	13	16	5
GTTTGGGTAAGCACAG	alt_3746_RC	125	185	135	101	171	100	197	111	198	92
TCTTCTGCTTGAGCTC	alt_3746_RC	21	41	35	36	26	23	45	33	40	32
AGATTTTCTTTCCTGC	alt_3746_RC	38	45	49	37	57	51	53	38	68	46
TAGCTGTCTGAATTTC	alt_3746_RC	18	29	22	22	13	21	28	17	35	19
TTATGGATGGGCACGC	alt_3746_RC	0	0	0	0	0	0	0	0	0	0
ATTTTCCTCTAAGTAC	alt_3746_RC	20	36	29	22	48	17	55	28	39	26
ATCCGTCTCATCAGCC	alt_3746_RC	15	17	14	6	21	10	22	7	31	14
CTCTCACTCGAACGCG	ref_1687_RC	37	55	53	42	57	31	63	36	52	30
TTAGCATCAGAAAACA	ref_1687_RC	19	23	32	15	42	30	20	19	31	20
AGGGATAGTCAGTAAG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
TCACTTCTTTCCCATG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
TGACTGCCTCCATTTT	ref_1687_RC	1	1	6	0	0	2	2	1	1	0
TCCTTAACCAAAAGAC	ref_1687_RC	3	8	7	6	11	6	13	7	19	10
ATCAATTTTGGAATCT	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
CGCCTAGTTTGCATTG	ref_1687_RC	3	9	4	8	9	6	7	4	9	6
GCGTTCAGTAATAGTT	ref_1687_RC	8	9	17	14	12	5	28	12	16	8
TACTCGATCGGCACTA	ref_1687_RC	63	74	59	60	45	59	64	51	75	59
CGAACGAGTTAAGGTT	ref_1687_RC	25	42	47	36	28	25	53	31	51	32
AAGGGATGACCTGGTA	ref_1687_RC	104	152	114	148	150	122	139	97	168	93
TATCATGGAAAAATTT	ref_1687_RC	10	12	20	10	17	23	22	16	16	13
TATAGTCTTCGACCTC	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
AAGGAGCTTTTTTAGG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
TGATAGGGAGTGTCAT	ref_1687_RC	12	12	14	24	23	25	26	7	36	17
ATCTCGGCTTCATCTA	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
CTACGATCGCCTCGAA	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GCAGTAATTAAATGTC	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
TGCTGTTCTAGCGGCC	ref_1687_RC	50	63	48	42	73	46	61	30	85	41
AATGCCAACTTCCGCG	ref_1687_RC	16	16	8	12	17	14	20	10	29	9
TTTTTCTGGCCATCAG	ref_1687_RC	27	50	31	38	38	25	59	24	65	21
ACTCTTGGTCATCGTA	ref_1687_RC	10	16	13	15	19	8	16	10	17	13
AACCCGTCGCTAGCCG	ref_1687_RC	31	36	47	36	32	28	41	28	31	21
TGCTTTCGCAGAGCGC	ref_1687_RC	16	18	19	19	14	14	17	16	16	9
GCCGATTCCGGTGGAA	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GGGTCAGCGCACACCT	ref_1687_RC	15	23	29	24	28	16	24	21	33	19
TGTGGACGTTACTGTA	ref_1687_RC	5	4	7	4	2	3	1	7	6	0
GTAGTTCCGGGATATT	ref_1687_RC	20	19	18	19	14	11	28	13	24	12
TAGAACCGTCGCAACC	ref_1687_RC	40	73	75	54	78	51	53	35	79	62
ACGTTCAGTGGTCCGA	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
TAGAACCCGTTTGTGG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
CCTCTCGCAAAACTTC	ref_1687_RC	8	15	16	10	14	10	11	13	11	4
TGATCTCTCTCAGTCT	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GCTCTTTCCTCGATAG	ref_1687_RC	12	16	19	13	18	15	21	7	22	6
GTTTACCTATATGCCT	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
AGGATGGTTGCAATTT	ref_1687_RC	10	10	14	4	15	14	16	9	21	8
CCGGATTCCCCTACGC	ref_1687_RC	13	31	22	11	35	15	27	30	23	17
TAGGTTTTTTCCGGGT	ref_1687_RC	9	12	13	5	10	15	16	9	12	9
CCTTTATAGTAGTTCC	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
CGGCCCCAACCGAGAA	ref_1687_RC	0	3	3	1	3	1	3	2	5	3
CGGTCTGCATCCAGGC	ref_1687_RC	122	185	129	155	189	115	218	124	183	110
ATCCACGACGTGGCTG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GGCGCGGGGTTTCGGC	ref_1687_RC	11	14	28	17	12	6	11	16	22	12
CGCTCACGTTTTTCTC	ref_1687_RC	178	193	192	184	187	177	175	157	204	168
CTATGCTTTTTCACCA	ref_1687_RC	24	44	40	16	26	23	39	29	31	18
TGGCGTCCATGAGTCA	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
CTTCATAGAGTCTAAT	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
CTCGTGGTATAAATGA	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GTGATAACTCCGACTA	ref_1687_RC	11	21	20	12	13	21	19	15	21	23
GCATCAAATGATAAAC	ref_1687_RC	25	22	15	16	14	22	17	14	24	16
TGCAATTACTTCACGG	ref_1687_RC	36	73	74	57	64	50	65	51	52	46
CATACTCCCATTTGAG	ref_1687_RC	20	34	24	20	25	17	26	15	23	10
TATGTTACTTGCGGGG	ref_1687_RC	13	33	16	17	20	19	15	9	14	15
TTAATCAGTGGCATAA	ref_1687_RC	9	17	22	21	19	14	20	15	35	14
GGTTGCGGCTCATCGG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GGTTATCGGGTGTTAG	ref_1687_RC	71	128	88	95	102	73	108	69	105	61
TGTGCTGTCTCACTAT	ref_1687_RC	13	15	19	21	18	7	21	14	14	14
GCTATAATGCGATTGA	ref_1687_RC	44	39	42	32	57	43	37	31	57	20
CTTGGGTCTTCCCTGG	ref_1687_RC	6	11	9	12	36	12	11	16	20	9
GGAATATCGTGGGGCG	ref_1687_RC	3	7	7	5	9	3	4	4	9	3
ATGGGATCTTCAGCAA	ref_1687_RC	8	7	17	12	13	11	8	5	16	5
GCTTATGCCTTGGTCT	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
TTGTACAGGTTAGTTC	ref_1687_RC	97	118	117	93	108	70	119	99	134	82
GTCTGGCCGATCTCTT	ref_1687_RC	22	18	31	17	26	12	22	16	30	12
ACTACCCTGAGAACGC	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
ACGACAGAGAGGCTTT	ref_1687_RC	9	14	10	4	4	3	6	10	6	6
ATAGGTTATATCGGCT	ref_1687_RC	25	31	38	25	53	23	32	44	34	22
ACAGGGTTGTTTGTCC	ref_1687_RC	71	74	93	96	89	77	113	59	92	61
TTGGGTTGCCCTTTGA	ref_1687_RC	18	20	12	19	19	6	15	10	19	22
ACTTTGTGGTGGAGCT	ref_1687_RC	28	22	36	31	47	25	44	29	38	20
TTAGGATATGATGTTA	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GGTGTCATTTTGTCCT	ref_1687_RC	5	10	9	5	7	2	9	5	5	5
ACACTAATCCTCCCGG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
TCGGGTGGATGAATCC	ref_1687_RC	5	3	3	9	11	11	6	5	7	1
GTCACTTCAGCAAATC	ref_1687_RC	10	9	10	10	9	4	11	5	14	5
GCTGCGATCCTGCTCA	ref_1687_RC	29	41	35	34	48	32	56	20	52	46
ATTACCTTAGGACAAG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GTTTCGCGACTTTCAG	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
GACACATAATTTAGCA	ref_1687_RC	27	37	28	29	73	26	39	31	45	22
TTGCATCGAACCGCCT	ref_1687_RC	0	0	0	0	0	0	0	0	0	0
AAGAATATCGCGTTGT	ref_1687_RC	50	65	58	59	34	52	50	47	76	56
CGGTTATCCTGTTTTT	ref_1687_RC	33	27	32	28	25	29	26	25	16	35
TATGCTGGTGTGCCGT	ref_6107_new	0	0	0	0	0	0	0	0	0	0
CTCGTTGTATTAGTAC	ref_6107_new	23	28	32	17	25	16	19	19	23	12
CCTAAGGTATTGCTCT	ref_6107_new	0	0	0	0	0	0	0	0	0	0
GAGCCAGGCCGTAGCC	ref_6107_new	0	0	0	0	0	0	0	0	0	0
CAGCGGTGCCATATCT	ref_6107_new	3	2	7	2	2	6	7	2	3	0
CGCCATTTCCTCCAGG	ref_6107_new	20	20	32	26	17	20	26	29	29	14
GCCTTTACAACTACCG	ref_6107_new	0	0	0	0	0	0	0	0	0	0
GCGTGGGCAACCAATT	ref_6107_new	54	9	62	62	20	43	12	55	26	53
TCGTTCACATAGTAGC	ref_6107_new	68	21	109	83	23	48	18	69	16	54
GCCTCCCCGTTAGTTT	ref_6107_new	7	26	12	5	18	3	20	2	18	6
AGCATCTGTGAGAATC	ref_6107_new	0	0	0	0	0	0	0	0	0	0
GTAGTTTTTACGTAAT	ref_6107_new	134	44	179	144	28	126	43	140	39	100
TTGCCTGATTGAGTTT	ref_6107_new	66	12	65	59	15	52	12	43	5	54
AAACTAAGTAATTCGG	ref_6107_new	0	0	0	0	0	0	0	0	0	0
TCGAAATTTCATGGTA	ref_6107_new	11	0	10	6	3	4	0	6	1	4
CTGGCGGTCATTAGAG	ref_6107_new	231	88	269	232	71	208	71	214	75	171
CTTTGTGCTTAGAGTA	ref_6107_new	0	0	0	0	0	0	0	0	0	0
GCCGGCGTATGCGTCT	alt_6107_new	578	166	684	607	184	574	170	551	184	522
CATTTTTCTGGATCGA	ref_6107_new	79	19	110	89	23	77	26	81	24	77
ATCATCTTATCCGAAT	ref_6107_new	61	21	68	72	16	62	17	72	21	59
GTTTCACGGGGCGCAA	ref_6107_new	178	56	208	213	42	189	48	170	63	160
GACAACATGCGTTAGA	ref_6107_new	213	96	259	246	102	216	89	231	81	187
GCCCAGCTTGAATGCA	ref_6107_new	0	0	0	0	0	0	0	0	0	0
TAACGTACTGGGAAAA	ref_6107_new	66	18	81	64	26	61	13	59	15	50
CTTTTCTAGCGCTGTG	ref_6107_new	132	42	173	167	61	145	54	124	45	125
ACAGTCCGCTACACTG	ref_6107_new	54	14	58	56	19	44	22	53	21	47
CGGTGCACACCTCAAG	ref_6107_new	60	27	89	71	22	72	38	57	25	55
TAGGTGGTGTTATACG	ref_6107_new	249	78	341	285	60	247	75	246	95	208
GATATCAATCTCACAA	ref_6107_new	90	18	94	102	34	99	26	91	25	40
GCTCTTATGAGACAGA	ref_6107_new	102	31	148	118	32	102	30	107	21	79
TACTGCTACATACATC	ref_6107_new	136	34	150	166	42	149	47	165	43	106
TTTAAGATTTCTTCAG	ref_6107_new	0	0	0	0	0	0	0	0	0	0
TTCACACGTAGCAATC	ref_6107_new	54	24	76	40	15	66	18	67	21	39
CTGAGTTAGCTCCGTG	ref_6107_new	0	0	0	0	0	0	0	0	0	0
TACTTCCATCCCTTAA	ref_6107_new	0	0	0	0	0	0	0	0	0	0
GAATTGGGTCTTAACT	ref_6107_new	4	2	6	8	2	3	0	3	0	3
CGGCGGTTGGGAACTA	ref_6107_new	0	0	0	0	0	0	0	0	0	0
GACGATTGTCACATTT	ref_6107_new	57	19	79	64	18	60	21	71	20	45
CTGCCTGACCGGGTGT	ref_6107_new	0	0	0	0	0	0	0	0	0	0
AGTACAGGGTATGCGT	ref_5492_reverse	17	33	31	25	26	22	38	22	37	11
CTTAGGTGTCAATTAA	alt_5492_reverse	36	20	27	22	29	34	22	25	21	37
TTTCTGTGAGTATCCT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
ACGGAAGGTTGACACG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TATGACGAGATCGTTT	alt_5492_reverse	43	29	38	43	24	45	27	25	28	38
ATAGGAACCCAATCGT	alt_5492_reverse	13	8	12	14	10	7	9	12	20	9
AATGACAAGCATCGGG	alt_5492_reverse	38	30	65	43	37	65	37	57	39	37
TACTATATGCTACGTT	alt_5492_reverse	28	26	31	21	26	25	32	22	37	23
ATCGGACCATGGTCTC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GCATGGGCTAACTTAT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
CTTATGTTGCCGAAAT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGCTATGGTTTAATAT	alt_5492_reverse	89	48	83	71	69	83	59	70	74	58
GACTCAGGCCCCAGGG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTCACATTAATAT	alt_5492_reverse	52	40	80	59	53	70	60	63	44	65
ATGCCACCCACTTCAC	alt_5492_reverse	0	0	0	1	0	0	0	0	0	0
ACGGCGCCCCGGGGTG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
ATGACGGACTCCCTGT	alt_5492_reverse	18	5	16	16	9	11	6	16	8	12
ACTCGTTTAATAACAC	alt_5492_reverse	69	91	88	73	96	86	117	56	101	56
TATGGCAACAAACATC	alt_5492_reverse	98	77	139	105	56	105	70	105	73	88
TCGTCCGCTAATGTTG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGGCTAGCCTGGC	alt_5492_reverse	42	41	40	39	45	38	44	46	42	42
GCCTTCACCGGGCTAG	alt_5492_reverse	10	12	18	10	14	26	14	25	18	11
ATGTCCCGCATTTGCT	alt_5492_reverse	5	7	5	2	5	9	8	16	7	9
GACGTCAACAGCGGAG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
CGTTATTTATTCCAGC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
ACTTTTGAGAATTGCA	alt_5492_reverse	303	247	367	306	255	293	244	303	318	285
GGGTGGAGCTAAAGCA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GATGAAAGGGCGGCGG	alt_5492_reverse	48	36	46	49	36	39	20	35	39	28
GACGTCATCTAGGGTA	alt_5492_reverse	6	0	2	4	0	4	0	2	3	3
CAGTGGGATCCTAAGC	alt_5492_reverse	5	7	10	10	1	4	3	7	8	4
CGGACCATAACCTTAC	alt_5492_reverse	8	42	12	8	27	16	29	14	31	3
GAATTGCCTCACTTAA	alt_5492_reverse	10	1	3	3	4	7	6	9	8	9
TAAAACGTGTCTGTGT	alt_5492_reverse	6	4	6	4	3	5	3	9	6	5
GGCTCATACTTCAAGT	alt_5492_reverse	23	24	33	36	24	37	38	36	23	36
TGGCTTAGTTGGGGGT	alt_5492_reverse	1	1	4	7	2	11	4	6	3	4
AGCCATGTACCCCGTC	ref_5492_reverse	4	16	9	7	15	2	8	5	21	5
CGTCTATCACGGTGCT	alt_5492_reverse	9	10	10	11	13	16	14	9	8	6
CGTTGGCTCCAGGCGT	alt_5492_reverse	6	6	17	7	5	7	7	9	10	9
TCGGCACTCTCAAGCC	alt_5492_reverse	79	101	53	66	117	52	96	64	79	43
TCGTCGTTCAACAACG	alt_5492_reverse	24	33	41	37	26	30	24	27	30	29
GTCAGCGTGTATGCGA	alt_5492_reverse	2	4	9	7	3	4	2	0	1	6
TGAATCGCGAAATCAA	alt_5492_reverse	34	18	38	26	20	27	14	39	26	19
TGTATTGTTAATAAGA	alt_5492_reverse	41	29	55	41	26	40	40	30	30	45
CATGCTAGATTTTCAC	alt_5492_reverse	44	57	56	64	64	46	66	51	46	54
TAGTAATTGGTCACGC	alt_5492_reverse	36	44	59	39	34	23	41	50	32	32
TTCCATATTTGAGATA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GCACTCCGCGTTATAT	ref_5492_reverse	12	10	15	22	14	18	27	11	16	18
TCGACGGCGCAACAAC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GCCTATGAAACAACGT	alt_5492_reverse	13	23	24	13	19	19	19	14	17	12
ATGGGTCTGCGATTCG	alt_5492_reverse	61	41	32	50	27	59	25	31	40	27
TAGACTCCTCTCGCGG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TTTAAGACTCCATACT	alt_5492_reverse	43	36	38	27	42	30	30	25	21	31
TTAGTCTATGGCATTC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TTGAGTAGCGTAGACG	alt_5492_reverse	17	24	35	25	34	30	22	16	26	26
CGATCGCCTGACTCCT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TTTAATGCGTCTGTCG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
CGAAACGACCGTGCTT	ref_5492_reverse	11	7	13	20	18	13	17	17	14	12
TGTCTAACCCTATTTG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TTAGGTCTTACAGGCA	alt_5492_reverse	14	16	12	10	20	13	17	7	17	9
ACGAGCACATGGCAGT	alt_5492_reverse	1	4	5	3	1	4	2	4	4	3
AGCCTTATGGCAGCGG	alt_5492_reverse	33	23	44	28	16	33	30	27	34	26
AAGGACTTTGACCGAT	alt_5492_reverse	28	16	23	34	14	25	24	22	15	25
AGATGGATCCAATCCC	alt_5492_reverse	53	40	35	44	28	43	50	42	30	27
CTGGCACATAGCACAG	alt_5492_reverse	48	48	38	31	33	32	28	21	22	21
GTGCTCATAGTTTGAA	alt_5492_reverse	19	7	18	13	11	15	5	15	9	15
GTACGGGCATGTCTAA	alt_5492_reverse	23	14	27	21	14	17	18	22	13	28
GCCTTCTTCGGTGGCG	alt_5492_reverse	12	5	18	14	10	9	6	5	7	9
GTTAGCCATCCCTTTC	alt_5492_reverse	24	33	39	30	29	29	26	26	30	22
GGTCTTTTTATTTAAC	alt_5492_reverse	18	24	22	19	23	17	29	27	25	17
TTGCGTATCAGTATCT	alt_5492_reverse	25	40	40	33	28	16	25	27	27	26
TTGTATCTTTACGTCC	alt_5492_reverse	20	11	30	20	20	39	19	20	9	15
CCATTATAATATCTAA	alt_5492_reverse	15	18	22	23	31	17	20	20	28	15
CTTCTTAAATTTCTCA	ref_5492_reverse	28	34	24	20	12	27	26	25	28	25
GTGCTTCCGTCCGCGC	alt_5492_reverse	36	31	54	36	36	46	27	25	43	46
ACATCCCTTCGTGCCT	alt_5492_reverse	7	27	9	5	24	12	22	11	37	4
GTGTCCACTGGCAGGC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
AGTTCGTATTTTTCTG	alt_5492_reverse	14	25	31	16	10	13	14	14	20	16
GAGTGGGGGTGGTTAG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
AATAATCCTCTTTCCT	ref_5492_reverse	33	34	47	36	39	31	19	33	28	30
CTACGGTTTATATGAT	alt_5492_reverse	62	62	84	78	39	59	56	56	54	54
GCTTACCTTAAGGATC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGGGGCGTCGTTT	alt_5492_reverse	50	42	52	48	44	59	54	51	48	44
GCTTCTCAATTTATTC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
ATAAACACCGGGACAA	alt_5492_reverse	7	5	3	9	5	8	4	4	6	8
AAGGGCTGCACCTAGG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TTAAAATACAGAGCTC	alt_5492_reverse	39	43	72	66	38	50	37	34	48	30
AGCGAAAGCATTTGCC	ref_5492_reverse	40	48	45	42	46	41	48	46	47	23
TCGCTTTTGTAAAGTG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
CTCGGTACTACTGCCG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
AGAATCGCAGACCAAT	alt_5492_reverse	37	12	40	25	15	33	25	27	26	24
TTCACTTGCTACCATT	alt_5492_reverse	11	13	31	15	18	8	18	17	13	10
ACGGTATGGGTCAGTC	alt_5492_reverse	26	16	34	31	19	24	17	15	17	17
GGACGTGTCTGTTTTC	alt_5492_reverse	76	79	103	87	71	80	75	70	86	68
AATTTTCTTCGGGGGT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GTACGAGAAGCGCTAG	alt_5492_reverse	41	47	49	60	33	46	40	48	47	48
TATATCCGGCTGAGCT	alt_5492_reverse	1	5	3	7	6	1	2	7	8	7
GATTATCAACAACCGA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGACATGCTCCCTAAA	alt_5492_reverse	21	17	36	21	15	24	20	27	17	30
AAGCATGTTACGCGAT	alt_5492_reverse	3	0	5	3	1	1	2	1	0	2
ACGCGTTCTTAGGTGT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GTCGTTGCGTCCGTTT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
ACTCACTGTTCACGAG	alt_5492_reverse	15	10	16	9	10	13	6	11	11	17
CCTCTTGTCGTTCATA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TGTGAAGAGTCAGTCC	alt_5492_reverse	32	30	37	21	27	29	17	38	36	28
GTGACTTCATCGGAAT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GTAAACATTGGTTAAC	alt_5492_reverse	62	61	75	53	59	63	47	64	61	74
GATAGTGGAAGTATTA	alt_5492_reverse	26	14	27	16	13	22	10	23	16	16
TCAGATTACGGTCCGC	alt_5492_reverse	10	8	14	17	6	9	5	13	6	13
ACTTATTGTCAGTGGT	alt_5492_reverse	60	68	80	97	95	88	84	80	91	89
CTAACGTGCGGCGATC	alt_5492_reverse	169	97	191	138	127	163	123	144	130	128
TCGGGTTAGGTGGTCA	alt_5492_reverse	100	82	105	114	56	101	84	78	67	71
AGGCACTACGAAGTGA	ref_5492_reverse	57	58	90	83	67	71	61	66	48	62
CGGAAAGATGATTCGT	alt_5492_reverse	79	53	75	71	65	84	52	68	41	53
CGCATTCTCCGACGCT	alt_5492_reverse	2	3	2	3	2	0	2	1	7	5
CATCCGGCATAGGTAG	alt_5492_reverse	14	7	16	18	12	15	7	24	13	14
CCTATCTGACCTTGTC	alt_5492_reverse	42	28	49	49	50	54	37	61	38	40
TAATCGTGCTCTATCT	alt_5492_reverse	63	41	75	63	49	55	42	64	41	55
CGGTGCCCCGATATTG	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGCGTATTTGGCATAA	alt_5492_reverse	24	11	9	16	18	19	12	19	10	7
TGCAGTGTTGCAGTTC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAAAGGATGATGC	alt_5492_reverse	4	2	4	9	9	3	9	10	7	8
TAGCTAAAGGACCATT	alt_5492_reverse	16	5	10	6	8	6	12	14	5	5
CTGGGCCTCTTTCTCT	alt_5492_reverse	25	19	25	27	20	13	15	29	15	20
CATTCTTCCCGTGTCT	alt_5492_reverse	53	28	69	50	40	58	42	43	35	55
CCTGATTACCACTTAT	alt_5492_reverse	12	10	11	13	7	8	3	6	11	5
ATCACTTATCGGAGTA	alt_5492_reverse	20	11	13	9	9	11	5	17	5	9
CGCGTCCTGTGGCCTC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCACACGCGTAGAGGT	alt_5492_reverse	37	30	28	37	40	33	47	24	36	19
ACGTGTTTTGCTTTTC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GTGCAGTGTGGGATGA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
AGTTACCTCGTAGGGC	alt_5492_reverse	37	40	40	51	42	47	44	39	44	49
GGAAATTCTTGGGTAA	alt_5492_reverse	28	20	31	27	25	19	23	32	27	32
CGTAGTGACACGGTGA	alt_5492_reverse	78	56	74	78	46	66	57	73	59	60
CTAGATATATACAAGC	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGTGTCTCTGGCC	alt_5492_reverse	26	43	32	18	40	22	40	26	40	30
TCGATCCAGTCTGGTC	alt_5492_reverse	36	30	39	41	33	47	40	47	37	38
ATTGGCTCTTTAGTCT	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
CCCGGTGGCAATAGAA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCAAGATAAGTAA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
AACTCCCGGCACGTTC	alt_5492_reverse	13	12	18	23	14	14	4	12	14	8
TCCGGTATCGTCTTCC	alt_5492_reverse	6	2	6	5	3	3	5	3	3	4
CCATTGTGCCGTGCAG	alt_5492_reverse	22	8	15	14	14	12	19	16	17	14
CCATTGTAATATCTAA	alt_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCGTAAGTCCGGTCAT	alt_5492_reverse	5	9	7	3	8	4	5	2	7	7
ATCAACAGCTTTTACA	ref_5492_reverse	51	90	67	63	79	50	74	57	89	54
CAATTTTGTCCACCTT	ref_5061_upstream	0	0	0	0	0	0	0	0	0	0
CGTACTAGATCACTGT	ref_5061_upstream	32	41	29	28	27	21	33	22	34	22
CCCATCATTGATTTTT	ref_5061_upstream	25	60	28	35	47	23	81	28	59	12
GTCTTCCCGCGCGGAA	ref_5061_upstream	41	69	53	38	74	48	65	32	80	40
ATTCTGGCTCGGGCGT	ref_5061_upstream	0	0	0	0	0	0	0	0	0	0
CTGCGGTCAACTCGGC	ref_5061_upstream	6	13	7	5	11	4	13	5	15	2
TCGGGCGCACCAACTC	ref_5061_upstream	20	39	35	28	32	31	49	21	49	28
GCCCCTTTACATATTA	ref_5061_upstream	0	0	0	0	0	0	0	0	0	0
GATACAGTATCTAATC	ref_5061_upstream	45	58	61	45	64	54	63	43	67	49
TGTCATGCCCCCCCAC	ref_5061_upstream	48	55	49	48	67	45	65	41	71	54
TTCCTTATGCAGTGAC	ref_5061_upstream	57	66	58	54	76	44	71	38	86	41
CCAAAGCGCCGCGCGC	ref_5061_upstream	51	85	57	57	119	72	108	60	91	48
CTCATGTACTCCTTCT	ref_5061_upstream	19	17	21	15	21	10	22	12	20	12
CCGGATGCTCGCGCGT	ref_5061_upstream	6	17	9	11	23	15	13	2	18	2
TTCTGACAATATCTTT	ref_5061_upstream	0	0	0	0	0	0	0	0	0	0
GAATCTCGTAGCCTAT	ref_5061_upstream	21	30	38	19	30	23	47	16	49	28
GTTTAATCTGATGCTC	ref_5061_upstream	51	67	62	45	53	35	80	38	72	39
CCACGGTATAAATTGT	ref_5061_upstream	2	22	6	5	28	7	23	4	23	5
TTTATCATTGAGTACA	ref_5061_upstream	0	0	0	0	0	0	0	0	0	0
CCTTCTGGACTAATTT	ref_5061_upstream	2	5	6	6	6	3	5	0	9	4
AGCGTTTAATCTGTGT	ref_5061_upstream	4	25	23	13	28	15	24	14	25	9
TGTCCACTGCGGCCGA	ref_5061_upstream	52	85	46	32	55	35	92	31	98	38
CAATTACATACTGGTC	ref_5061_upstream	2	2	1	0	0	1	5	0	4	1
TGAGGTTTGTTAGGGT	ref_5061_upstream	16	27	13	13	28	6	23	6	25	9
ACTTGGAGGGTAATCG	ref_5061_upstream	5	19	14	9	25	17	13	10	19	10
TTTAAGACGTGCTATC	ref_5061_upstream	24	44	30	30	48	22	48	13	34	24
TGATTGTGTAGCCTAC	ref_5061_upstream	10	30	12	17	39	17	21	10	40	12
TTGGCTTGTATAATCA	ref_5061_upstream	124	179	136	92	175	121	191	93	210	98
GCTAAAAATTTTGCCT	ref_5061_upstream	41	71	51	25	71	30	61	32	66	37
TTCGTGACCCTTCAGC	ref_5061_upstream	28	28	27	18	45	27	68	30	33	25
ATTTCGGAATTTACGT	ref_5061_upstream	38	45	40	42	56	29	46	30	50	32
AGTGTTGAAATGTTGT	ref_5061_upstream	0	0	0	0	0	0	0	0	0	0
CAATTCAGTGTAACAT	ref_5061_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGCTGTTACCACC	ref_5061_upstream	14	21	10	19	16	14	31	18	23	21
ACTTTCCCATCCTCCG	ref_5061_upstream	23	54	30	36	49	22	46	27	36	29
CATTAAAGATGCCTTG	ref_5061_upstream	61	117	94	77	126	52	169	74	145	80
GTTTGAAATCTCTTGG	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
TTATCCTTAGTCATTC	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
TATTTTAGTTTGCTGG	ref_959_reverse	100	36	108	97	29	84	35	72	52	74
TGGTTTACCAGATCCC	ref_959_reverse	89	40	112	94	33	92	31	65	35	87
ACTGTTATCGTTGCAT	ref_959_reverse	13	3	30	12	5	18	7	15	6	9
CCTTTGGCTATTTTCA	ref_959_reverse	102	46	145	116	32	117	47	104	52	111
CATATTTATGATACGT	ref_959_reverse	64	28	86	79	26	72	23	60	28	64
CATCTTTGAGGAGTGG	ref_959_reverse	68	22	73	75	32	68	24	86	39	66
GTTAGCGGTCCGGCAC	ref_959_reverse	6	5	18	9	8	10	5	14	3	15
ATATTGTACTCTTAAT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
GGGTCTCTACGTATCT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
GAGTGGCCCCATTTGT	ref_959_reverse	59	27	90	90	35	57	35	59	31	63
AGTTAAAGTATGACAC	ref_959_reverse	16	2	24	9	4	4	2	3	0	8
TCTAAGTCCATCGTTT	ref_959_reverse	20	15	39	22	9	30	16	33	12	33
ATGGATCTCCGAGCCT	ref_959_reverse	125	48	136	121	46	122	40	132	49	97
TAGAATTAGCCGTTCT	ref_959_reverse	85	33	107	97	44	69	38	93	40	88
GGGTCACTGAGTTGAT	ref_959_reverse	201	70	260	195	70	201	92	187	83	164
CATTAAGTGATCCTGA	ref_959_reverse	276	113	295	276	112	235	88	223	119	239
ACTGTCTGGAAACTAG	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
GAAGCCGCAAAGCATT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
ATTAACGGTCCTTTTA	ref_959_reverse	456	197	559	535	186	498	192	485	197	405
TTTAATTCTTTGCCAT	ref_959_reverse	34	19	67	84	21	70	18	26	31	38
AGAGACTCGTGTGTAT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
TCCTCTGGGATGCCTT	ref_959_reverse	229	108	293	261	68	229	123	217	117	234
TAGCGTCTACCAGCCT	ref_959_reverse	502	194	657	529	220	479	186	465	264	480
GAGATGTGGGGTTTTC	ref_959_reverse	74	25	78	63	26	65	36	77	32	54
GATTTTTGGATCCATT	ref_959_reverse	88	26	92	82	23	91	32	73	32	78
GCTTTTAGGGACCGTC	ref_959_reverse	84	47	110	93	45	92	48	109	38	95
AGCTTTTTGGTCCGGA	ref_959_reverse	174	69	208	206	77	163	77	160	96	162
AGAGACTCTTACGTCG	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
TTCCCTTTGTGGCATT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTTCGCTTACCAC	ref_959_reverse	119	63	138	148	77	110	44	91	74	112
ACACTGAATGAGTCCT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
TTGGTATTACAGCGTA	ref_959_reverse	81	45	100	74	25	57	28	74	48	59
GCATTCTGCGTCTTAA	ref_959_reverse	121	49	145	155	49	101	45	99	56	102
TGCCTTTCGAAATTTA	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
ACACTGGATGCTGTGT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGCTCACGGTGAT	ref_959_reverse	44	19	41	37	18	31	12	28	9	26
TATTGCCTGCACGATG	ref_959_reverse	86	31	133	94	27	97	37	81	45	95
GTCAATATGATGTGGA	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
AATGCTTGTTTTTTAT	ref_959_reverse	107	33	139	94	29	97	41	108	38	89
ACGTGTAGCCTCGTGA	ref_959_reverse	79	36	95	66	33	81	37	82	26	72
ATTTTTTTTGTCACCA	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
AGTTAAGGCGACATCT	ref_959_reverse	61	19	79	71	22	64	27	66	22	65
GCTCCAGCTCTAGATT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
ATCTGCAACACATTAC	ref_959_reverse	2	3	6	5	1	9	7	4	8	7
GTTTTTGAACTAATTG	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
CTTAATATGGTTGTTT	ref_959_reverse	61	18	47	56	23	53	20	51	14	36
GCACACCCTTAATTTT	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
CAACTCAACGTATCCG	ref_959_reverse	10	11	4	10	15	7	8	6	14	7
CTATGTTTGCTCGGGC	ref_959_reverse	0	0	0	0	0	0	0	0	0	0
AAACACAGCACTATTT	ref_959_reverse	11	3	15	14	10	7	6	10	6	10
GATCCATGGTGGACCT	ref_959_reverse	16	4	12	14	12	13	2	17	7	17
TTGTTGCTAGTCCGCG	ref_959_reverse	14	14	14	13	4	11	9	14	7	12
TAAGGTGTACTGCAGT	alt_468_missing	15	17	28	23	23	15	28	14	18	13
GCCTGAACTGCCTATG	alt_468_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTACAGAGCTAC	alt_468_missing	85	135	107	92	138	100	119	91	132	66
GTAAGAGATTGCTTCG	alt_468_missing	26	22	39	16	20	27	32	12	31	7
TGTGTAGGGCCAAGGG	alt_468_missing	12	28	30	20	20	14	14	17	24	10
TACGTCCCGTGTGGAA	alt_468_missing	37	66	50	48	69	41	67	45	74	30
GGACGACTTGTTCCAG	alt_468_missing	5	6	7	6	10	7	9	5	5	4
CCCGCTCACACACTCT	alt_468_missing	0	0	0	0	0	0	0	0	0	0
CGTCAACTCTCTCGTA	alt_468_missing	62	62	44	49	82	54	71	57	84	48
AACGCCCGAATTAGGT	alt_468_missing	0	0	1	0	0	1	0	0	1	0
AAGTATTTGATAATTC	alt_468_missing	47	49	53	36	66	32	76	48	75	49
TTTTGCATATATATGG	alt_468_missing	74	97	89	54	70	62	90	52	92	48
GGTGGACCCGAAGTTG	alt_468_missing	78	114	103	102	105	83	113	91	97	59
GATATTCCCAGGGATC	ref_5641_new	63	69	80	61	61	70	86	64	74	57
CACCTTCGAAGTAACA	ref_5641_new	15	25	24	19	26	16	15	19	29	15
CGGCAATGCAACGTAG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TGTTTCATGAGTTGTT	ref_5641_new	94	154	123	102	118	105	117	94	135	111
TTCTTCTGTAGTTTAG	ref_5641_new	14	19	16	22	29	16	13	21	23	19
TCTGCCGATTCAAAAT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GAGGTTTTCGGTAACA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
ATGCTCAGTGGACAGT	ref_5641_new	7	8	13	7	11	4	13	5	8	9
TTCCCGTTGTAGCGAA	ref_5641_new	44	54	47	43	58	41	58	48	65	38
CCGGGATATGCGTGGA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TGCTATCAGAGAACCT	ref_5641_new	13	23	15	12	18	10	19	8	13	16
CTACGATGAAGAAACA	ref_5641_new	24	48	32	30	36	20	39	25	38	21
CGACTATAGGTTTGGG	ref_5641_new	22	30	38	16	29	21	33	25	34	31
CCGGCGTCTCGGAATG	ref_5641_new	22	30	29	13	29	20	11	15	16	14
CGTACCATCAGTTTCG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CATAACTGTGTTAGGG	ref_5641_new	44	59	47	49	57	38	75	35	58	36
TCTGGGCGGCTCATCT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
AGTTCCATTATGCCGT	ref_5641_new	30	35	38	33	23	21	30	29	35	26
AGCTCTCGGGTAACTA	ref_5641_new	9	14	18	18	9	6	13	6	16	18
TTAAAACTTGTATATC	ref_5641_new	22	18	21	22	20	16	19	16	23	16
GGAGTTCGGCCGAACA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GCCGCTAGTACTTGAG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TGTTCGAGCCTGTCGC	ref_5641_new	13	20	10	9	13	9	10	9	7	8
ACCCTAACGCTCTGCG	ref_5641_new	1	0	1	3	1	3	4	1	1	1
TCTTTGGGATGATCGC	ref_5641_new	8	5	9	3	6	8	7	0	3	7
TCTATTGCTGTGTTTA	ref_5641_new	5	11	7	3	15	3	17	6	13	3
GGCTCTTATGATCAGG	ref_5641_new	14	30	27	28	26	26	27	22	28	22
CACTAGATAACATTTC	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TTTCGTAGTATACGTG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TTAGCTAGTCCTTCGG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TCATCTCATTTCTCTG	ref_5641_new	12	19	29	17	22	30	19	12	23	12
TGCACAAAAAAATTAT	ref_5641_new	21	32	18	28	31	30	37	21	32	33
CTTTACCAGGTTTTGA	ref_5641_new	34	27	29	23	34	17	31	27	33	29
CTTCCGTCACGTGATG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CTACTATGGCTCATGT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CTCTTCGAGCATAGTC	ref_5641_new	17	15	15	10	25	7	28	9	20	16
TCTGTCCATGCCGACA	ref_5641_new	12	21	10	10	25	6	29	23	25	16
CCACTATCAACCGTAC	ref_5641_new	1	1	2	2	1	0	3	1	8	4
GAGTGGCTTAGCGCCC	ref_5641_new	31	41	36	35	44	23	30	38	51	23
TGTACTGGCCCGGGAG	ref_5641_new	1	1	2	2	5	1	0	1	3	0
TAACCTATAACTTAGA	ref_5641_new	38	36	35	27	46	32	46	27	50	27
CCTTCATACGTGTGCA	ref_5641_new	11	17	7	7	11	7	15	6	19	5
TCTAAGATTAGACCAT	ref_5641_new	21	32	26	23	24	25	39	23	24	19
ATTATTTTTTCAGTTC	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TTATCATGTTAGAGAG	ref_5641_new	69	84	66	60	82	49	77	64	86	45
ACGCAGTTGCCGCCCC	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GTGCTGACGGGCCGTA	ref_5641_new	27	46	56	44	35	41	42	41	43	33
AATCTGACAGCCTTGA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GAAATATGTATCCAGG	ref_5641_new	11	2	9	13	7	6	17	6	7	10
GTTGACGGATAGGTAT	ref_5641_new	17	30	28	18	24	31	18	14	29	16
CTCTATAGTGCCACAA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TTCAACAGTACTTCCT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CCCGACAATGTTTCTC	ref_5641_new	1	5	3	1	4	5	4	6	3	1
AGCTAGATCTGTGGGG	ref_5641_new	10	7	10	12	9	7	9	5	9	6
CTGGTCACTACAGGAG	ref_5641_new	8	12	13	4	7	11	13	10	7	5
ACTTTCGCCGTCGTAA	ref_5641_new	24	24	21	16	23	24	24	13	23	13
GCATAGTTGCCGTTAG	ref_5641_new	5	13	14	19	23	14	15	16	26	9
TGCTTGGCTTCTTATC	ref_5641_new	0	0	0	0	0	0	0	0	0	0
ACCTGAATTGTCAAGT	ref_5641_new	3	2	6	5	8	7	12	0	5	6
GGTGCTTGTGTCTTTC	ref_5641_new	5	4	5	2	3	1	2	1	3	8
CTCTCTATATCTTTCG	ref_5641_new	7	7	3	7	4	5	11	4	4	1
GTGTTGGGTATGAGCA	ref_5641_new	39	56	43	42	44	50	50	30	44	41
CAATTCAGATTTGTAT	ref_5641_new	13	11	8	15	11	13	14	10	12	6
CGGGGTTCAATGCTAG	ref_5641_new	4	8	10	5	11	6	11	5	14	4
TGGGGGCTTTTATTCA	ref_5641_new	34	35	27	32	36	37	36	31	46	35
CGCAGCGAATTCCAGT	ref_5641_new	9	17	9	8	10	10	12	10	16	10
GTTCTGTGTTGCCTCT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GCCTGTCAAAATATCT	ref_5641_new	69	90	87	63	124	71	98	69	100	82
CTATGATTAGGCGGTG	ref_5641_new	13	15	15	7	21	8	18	14	19	10
GATAAATATAGGGTTG	ref_5641_new	7	2	6	6	5	9	2	4	6	6
GGGTTCACGTTCCGCA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TTACGTTCTCGCTGTT	ref_5641_new	13	26	15	10	25	16	13	8	21	15
ATTTACCGATGTATCT	ref_5641_new	45	40	48	52	32	34	37	34	44	33
TAGGTCATCTTTTAAG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CTTTTCACAATGTGGG	ref_5641_new	14	25	26	20	21	17	27	17	30	18
AGCTTGCCTACGTCCT	ref_5641_new	26	27	27	23	28	20	40	13	28	9
TTGCGCTCACGTGCGC	ref_5641_new	5	2	2	6	3	5	6	0	10	8
CTTAGTGAGCCTCTCG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TCGATCGCATCAATAC	ref_5641_new	0	0	0	1	2	2	1	0	1	0
TATTCATGTTCTCTAA	ref_5641_new	14	16	11	9	25	12	25	15	16	12
AAGATATTATCAAAGC	ref_5641_new	39	30	37	37	44	39	27	27	48	31
TTGACCGAATTACTCA	ref_5641_new	22	54	52	33	56	32	55	35	49	33
CTTTGGTCAATTGGTA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CAGTCTTTCGGTGGTC	ref_5641_new	31	32	42	34	30	28	37	27	19	27
TGCGAATTACGAGCAC	ref_5641_new	82	92	111	83	87	76	89	78	77	72
GGCTGAGCCTCGTCAA	ref_5641_new	9	10	12	9	14	9	9	8	12	6
ACGATAGGATTCCGTC	ref_5641_new	8	6	5	5	8	7	6	6	13	8
CAGGGTTCAACGGTAG	ref_5641_new	24	35	31	38	41	31	30	16	47	41
TCCAGCGCTGGTGTTC	ref_5641_new	6	11	14	14	13	11	11	4	9	9
CAATGAGGTGGTTGCG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GGGTCAACTGAATATT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TCTATGGCCTTGCTGA	ref_5641_new	11	13	14	14	13	18	15	11	25	15
TTACAAAGCGTCTAGG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CTAGTTCCCTCCCGAC	ref_5641_new	8	14	10	13	24	7	19	6	18	8
TACGGCATATCTTTCT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TCCCCGCCAGCATGAA	ref_5641_new	40	63	42	37	75	32	62	44	60	37
CCTGACCTTCGTAACT	ref_5641_new	2	27	7	2	31	2	34	7	34	9
ACCTGCTATACGGCTC	ref_5641_new	14	28	11	13	21	10	25	16	20	11
ATTGCCTCTCGGTAAG	ref_5641_new	42	34	23	26	35	33	32	30	33	31
GGAGTTTACCGAAATG	ref_5641_new	47	41	31	24	35	24	37	27	46	41
GGTTATGTCTCTTTCA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GCACGTACAGGTTGTC	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CGCGCTCCAGTTACTC	ref_5641_new	4	7	1	3	4	3	4	3	4	3
ATGGTTCTCAGGCCCT	ref_5641_new	1	7	7	3	4	4	4	3	5	4
GCGTCGAATCTTCACC	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TGCTCAATCTTTAGTA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CGAGCATAGACTTCCG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TGAGGCTTCTAAAAAT	ref_5641_new	58	54	81	73	49	59	64	45	68	47
GCTCGACGTTTGCTGC	ref_5641_new	11	7	12	6	7	8	18	5	5	4
TTATATTTATACCGAT	ref_5641_new	15	13	31	18	8	21	19	13	27	12
GACACGCTCCTTGCCT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GGTCAGTCAATTAGCA	ref_5641_new	59	77	70	67	80	53	86	66	71	59
GAAAGTCAGCACACGA	ref_5641_new	54	55	59	60	66	69	79	49	83	52
GTTGCTATATAGACCG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CACTCAATTTCCAACT	ref_5641_new	33	63	40	40	62	30	40	42	51	22
ACCTCCTGAATTCCCT	ref_5641_new	2	4	4	4	0	4	6	1	4	2
TACTTCTCTTGTATTC	ref_5641_new	5	2	8	6	3	5	4	3	1	5
GCCGTTTTTACACGAA	ref_5641_new	30	30	24	30	32	38	38	19	35	24
TAGGGACCTTCCACTC	ref_5641_new	5	6	3	1	2	3	7	1	1	5
GAGTCTTAACTGTGCC	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CCTGTTTTTATCCCTT	ref_5641_new	16	35	23	33	29	18	29	23	24	9
TTTCAGTGCGTTCGGG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
AACGAGACTGTTCAGC	ref_5641_new	13	33	20	20	37	25	34	22	27	19
CTTTGTGAAGCCCGTG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GTTGCGACTTCTCACG	ref_5641_new	140	148	143	133	116	122	144	109	148	100
AACCTACCTGCCCGTT	ref_5641_new	19	42	20	15	37	18	60	18	47	12
TTGTCATCCGTCTTAC	ref_5641_new	33	70	37	46	65	50	54	42	67	40
CGGGTATCCCCTTCAG	ref_5641_new	17	28	30	28	29	17	28	24	34	15
ACGCCTATTAACGCGG	ref_5641_new	8	13	9	8	13	7	13	11	15	7
AGTGTTTTAACCTGCG	ref_5641_new	17	21	25	30	22	29	21	21	24	17
CTTCGGGCTTAATACG	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TCGGTGTTCTTTTCGT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
CAGTCTGATCATTGCA	ref_5641_new	104	105	107	116	111	85	112	87	99	74
GGGTCTGGTGGAAGTA	ref_5641_new	24	50	48	30	29	41	45	22	40	31
GTCGCTGGCTAAAGCT	ref_5641_new	5	10	10	8	6	8	4	7	8	2
TCATAAGGAGCAATTT	ref_5641_new	44	60	53	49	63	48	53	44	58	30
CATAATTATTTCGATC	ref_5641_new	10	6	8	4	9	7	12	9	6	8
GGCTCCGTCTGAAGTC	ref_5641_new	25	36	31	22	37	23	36	27	32	19
TCGGTGTTCGTCGATG	ref_5641_new	0	0	3	1	0	0	0	1	4	0
CGTACCTTCTAACCAT	ref_5641_new	5	16	8	5	9	7	13	8	13	12
CACCTTGGGTTATCAG	ref_5641_new	8	11	3	21	16	8	10	7	8	5
GTCTTGGGATGGTGCC	ref_5641_new	9	11	2	6	8	9	10	7	15	4
TTTCATATCGAACAAA	ref_5641_new	3	3	2	0	3	1	3	1	2	3
CGTATGCCGTAGTCCA	ref_5641_new	0	0	0	0	0	0	0	0	0	0
TTGCTTTTGATAGTCT	ref_5641_new	0	0	0	0	0	0	0	0	0	0
GACACAGGGTTAAACA	ref_4926_upstream	35	75	36	33	40	23	72	24	78	27
CTGTGTGTCATGGTGG	ref_4926_upstream	13	20	15	9	27	10	20	8	20	10
GGGGATTAGTTCTTCC	ref_4926_upstream	14	28	23	13	36	18	40	14	40	25
CCTCCTACTACGATGC	ref_4926_upstream	4	17	9	2	14	0	13	1	16	6
GTGCCTCTTCAAGGCA	ref_4926_upstream	13	18	12	6	20	13	24	6	15	16
TTGTAGTAGAATTCCT	ref_4926_upstream	3	5	0	4	2	1	0	3	4	1
GCGCTTTTTACTGAGT	ref_4926_upstream	8	13	6	7	10	9	10	10	11	3
TGCAGTATTCAGCAAG	ref_4926_upstream	96	170	129	101	187	76	166	75	165	82
TGGTAAGATCACTGCA	ref_4926_upstream	24	45	36	29	50	32	42	43	33	22
AACGGCAGGACCGAGT	ref_4926_upstream	4	10	4	8	7	3	4	4	8	6
GGTGACTCATGCGAAC	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GGGTCACATTTTTAGC	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTGTTTGAATCAG	ref_4926_upstream	6	2	14	3	17	5	19	3	18	2
AGGCAATCCTGGGGGC	ref_4926_upstream	47	95	51	40	80	46	89	35	85	43
CGTAGGGACTTAGCCT	ref_4926_upstream	15	28	22	16	49	24	51	9	46	14
ACTCCTTAACGTTTCG	ref_4926_upstream	4	9	4	6	12	3	5	2	8	1
TAGGGCCGCTATTCGT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GCAAAAATATGCAAGT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GACAAGCGTTGTGCCC	ref_4926_upstream	8	9	12	16	6	10	16	6	13	8
AATGGGCCCCTCTTGA	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTCTGGTTCTTT	ref_4926_upstream	4	19	9	5	6	11	15	5	11	4
TTGTCCACTGCTCTGT	ref_4926_upstream	6	6	5	2	10	2	14	7	11	0
CTCGTCTTTCTGCCTT	ref_4926_upstream	4	5	4	3	1	2	4	1	3	1
CCAGGTTTAAACTCAT	ref_4926_upstream	10	12	4	3	9	1	8	1	7	5
CGACCTAGAACGTCCC	ref_4926_upstream	6	7	5	3	12	3	16	3	10	4
AGTCTCCGCTATGTAA	ref_4926_upstream	2	9	6	3	7	3	11	3	5	2
TACAGTTAGAACTATT	ref_4926_upstream	5	12	10	5	16	7	20	3	23	11
CGTAAGAGCTAACTGC	ref_4926_upstream	66	163	100	65	139	67	148	89	147	78
TCATCGCCTAATCCTT	ref_4926_upstream	1	1	1	2	2	1	6	2	2	0
AGCAGTATTCAGCAAG	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGTGCGGTCTTGC	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTCAATGGCCGGC	ref_4926_upstream	6	14	7	7	12	5	15	7	10	2
GTTATCTTTTGTTCTC	ref_4926_upstream	48	71	61	52	80	46	70	57	78	51
TTGCCCGGTTTGTACA	ref_4926_upstream	36	47	41	30	46	37	48	31	36	22
CGCTACGGGTAGGTGT	ref_4926_upstream	10	18	8	8	27	5	16	7	19	9
ACCCCGCAATCCATGT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
AGGTATCTCCTGAACA	ref_4926_upstream	13	22	6	9	16	9	19	2	22	3
TAGACGCCTTAATTTG	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCTTGGGCTCGCC	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTCCTTTTAGCT	ref_4926_upstream	42	56	34	27	60	31	40	17	64	23
CTCATTTTTTTTTGTT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTTAATATTTGCA	ref_4926_upstream	10	34	11	11	33	8	21	9	36	6
CCCATTATAATAAACA	ref_4926_upstream	11	23	3	15	12	5	20	5	20	8
TAGACAGTGCGCCAAT	ref_4926_upstream	22	39	16	19	37	21	50	20	66	14
AGGCTGTCTCAGAGTG	ref_4926_upstream	13	21	13	9	9	5	7	9	17	12
TGCATGGTTATAATAA	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
AATCGTCACTCAATTT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATACTGCTCTGT	ref_4926_upstream	4	4	3	1	6	2	4	0	6	2
CCTTGTGAAGCCTCAG	ref_4926_upstream	7	17	8	5	13	3	18	2	13	7
AGAAGGGGATGCTTCG	ref_4926_upstream	11	22	8	15	20	15	29	7	21	11
AGTGTTCATTTCGGGT	ref_4926_upstream	1	4	0	0	1	0	0	0	0	0
AGATTACAGGATCCTG	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
CCTAAGCTTATACCCT	ref_4926_upstream	2	2	1	2	2	4	3	2	1	0
TTGATTATACAGAAAG	ref_4926_upstream	12	15	8	6	14	12	12	11	16	4
TTCTCTTCTGCAGAGA	ref_4926_upstream	12	19	10	7	20	9	10	5	17	3
TTCTGCCATGGGGTCT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GCACAATTGATCGTCC	ref_4926_upstream	3	8	1	3	7	5	8	2	10	2
GCCCTGGCCTGTAAGC	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
TCATATCCGCCATGAG	ref_4926_upstream	4	5	5	10	2	3	3	3	9	4
TAACAATACGTGGAGG	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
AAACAAATTCGCCATG	ref_4926_upstream	54	104	66	51	69	48	104	50	84	63
TTAAAGGGTACCGCTT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTGATGCAAGACT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
CTATGGCTTTCAGAAG	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
AACAATGGCGTTCACT	ref_4926_upstream	44	57	60	40	54	55	69	45	60	30
AGCCGCACCTTTAATC	ref_4926_upstream	20	37	12	14	20	11	22	10	27	11
AACCGCACGTCAGGTA	ref_4926_upstream	22	37	19	11	41	17	27	16	34	13
CCTCTGCATCCACCGA	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GTATCGACAACCCAAT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTTTAGGTCCCGT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GCATGCGGTACCGCTT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GTATTCTGTTTGTAAT	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
CTGTGGCTTTGCGTTC	ref_4926_upstream	14	25	15	10	29	15	37	13	33	11
GCAATAAAATGTTCAG	ref_4926_upstream	1	5	6	0	0	5	3	4	1	0
GGCGGTGCGCAGACAT	ref_4926_upstream	16	14	15	11	15	12	25	10	21	19
GCGTTCCAGTTTCTGC	ref_4926_upstream	3	25	13	9	10	3	21	8	11	9
CAGCACTTCGATTTTC	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
GCGTAGCCGAAGTGCC	ref_4926_upstream	7	17	4	5	11	6	10	6	15	6
TGCGCGCTAGCGTTGG	ref_4926_upstream	29	71	29	16	43	23	53	23	55	17
TGGTGTCCACTTATTG	ref_4926_upstream	0	0	0	0	0	0	0	0	0	0
AAGTTTGCCGTCAGGC	ref_5026_missing	104	74	96	83	101	74	84	85	83	83
TAACGAAGCGCCTATC	ref_5026_missing	59	47	95	87	54	73	61	61	64	76
AGTACACTTGATATTC	ref_5026_missing	159	146	169	161	165	139	199	153	147	157
ACCTTATTATCAGTAA	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
TGTAGGGGAGTTGCTA	ref_5026_missing	20	14	24	29	26	22	22	27	25	17
TTTTTTGTACGGGCGT	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
ACGGTGTAAATGGTAT	ref_5026_missing	6	5	11	7	2	5	2	5	3	5
ACATGCGGTTATGGAA	ref_5026_missing	20	20	18	13	12	12	15	12	18	16
TCAGCTCACTCACCGA	ref_5026_missing	3	2	6	2	7	5	5	2	4	5
TTAATAGTAATTATAC	ref_5026_missing	32	39	48	42	37	50	33	39	35	39
AACGACATTTATTTGC	ref_5026_missing	14	11	24	15	12	13	14	13	16	16
GCTAGTGAAAAGACGC	ref_5026_missing	5	10	3	6	11	6	19	7	19	10
CAAGCGAGCAATCTCG	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTCTCAAATGGG	ref_5026_missing	22	17	38	24	16	29	18	23	16	26
GTTCGTCACGACTGCC	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
TGATCGTGGATTAGCT	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
TACGTTGGCCCACATG	ref_5026_missing	34	40	53	34	27	30	47	33	33	35
AGCCCTCATCCTGTCG	ref_5026_missing	23	19	35	30	13	19	17	14	17	23
ACTCCCGCCCCATTTA	ref_5026_missing	4	17	11	6	8	5	7	3	17	12
TTATTAGTATTTCCGG	ref_5026_missing	18	18	25	22	16	19	19	24	22	8
CATAGGGGTATGCTGA	ref_5026_missing	8	6	5	13	2	7	17	8	8	14
CGCCATGTGATTGTTA	ref_5026_missing	69	69	71	81	80	70	77	67	67	59
TAGAGATCTTCGCTTA	ref_5026_missing	31	21	25	29	25	17	27	20	18	20
TGTTGGGTCCATTGTC	ref_5026_missing	13	12	23	15	21	6	14	12	4	13
AACTGTATGGACGAAG	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
CTCTGGGACATCTCGG	ref_5026_missing	23	10	14	15	18	16	13	17	9	15
CTTCTGGTTGTGTTGG	ref_5026_missing	7	9	9	11	6	10	12	14	11	14
AATGCTGCCCGACGTT	ref_5026_missing	207	157	290	193	169	195	168	189	145	169
ATGTTTCTGTGCACAC	ref_5026_missing	56	33	59	36	39	38	33	43	46	52
CGTTACAAAGTATTAT	ref_5026_missing	123	130	169	138	129	125	141	124	131	104
GTATCCAGCCCAGTCT	ref_5026_missing	22	33	30	32	28	26	30	23	35	30
GTTTTCAGAGTTCTTT	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
GGTATGCACTCTCGTT	ref_5026_missing	83	96	116	92	84	79	80	72	76	86
TTGTTTAAATTATTTG	ref_5026_missing	50	48	72	57	37	51	48	50	41	59
GCTAGTCGATTAAGGG	ref_5026_missing	15	13	23	30	16	12	23	15	17	18
ATTTCAGCTTCAGCGG	ref_5026_missing	34	21	38	24	31	21	21	25	22	16
CTTTCTTGCGCCAATT	ref_5026_missing	67	75	91	77	71	59	72	61	82	70
CTACTTTCCAATTAAG	ref_5026_missing	36	22	46	31	33	27	34	31	37	35
TCGACAACGTCAGTGT	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
GTGTCAACACCATCGT	ref_5026_missing	16	20	19	13	14	18	7	9	20	14
AGTGATAATTCCGATT	ref_5026_missing	4	9	6	6	7	4	4	0	3	3
CACAGTTCCTTTGAAC	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
TTGCGCCGTCGTCTCT	ref_5026_missing	29	31	24	35	13	24	16	21	40	12
CACTGACTTTTCTAAT	ref_5026_missing	0	0	0	0	0	0	0	0	0	0
ATGTTACCTGTTCATG	ref_5026_missing	10	10	8	7	10	5	7	8	14	4
GCGCGGCTCGTGACCT	ref_5026_missing	30	28	52	47	30	29	34	30	44	32
AGGGAGGACATGTCAG	alt_4502_missing	49	72	69	62	82	56	108	44	83	42
GCTGGTCTCGGACCCT	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
CTCCGCTGGCGGTCTC	alt_4502_missing	23	47	25	22	33	18	52	27	55	11
GCTTAGGGAGTCCATT	alt_4502_missing	20	34	21	22	36	15	32	19	31	18
CAGATCGCATGTGGAT	alt_4502_missing	59	93	67	67	106	71	112	56	105	61
TTCAAATCCAGGATAT	alt_4502_missing	0	0	0	0	0	0	0	0	0	0
AGCACTACTGACGACT	alt_4502_missing	15	33	18	18	21	14	37	13	26	16
CGGGCTAATTCGCTGC	alt_4502_missing	36	67	65	37	71	37	67	37	76	40
ATGTTCGCCCGATAGT	alt_4502_missing	8	16	12	13	25	16	21	11	23	7
TCCGTTTCTCAATTTC	alt_4502_missing	4	5	2	4	14	2	14	3	9	1
ATTAGCTCACCCGGGC	alt_4502_missing	0	0	0	0	0	0	0	0	0	0
TAGGATTGGGGGGTGC	alt_4502_missing	54	90	49	34	82	48	98	27	100	43
TTAAGGGTTTTAGTGT	alt_4502_missing	29	71	39	33	77	45	76	38	61	26
TTCCATAGCGAGATTG	alt_4502_missing	15	28	20	17	28	23	39	26	31	13
TTTAACGTGAACTCCG	alt_4502_missing	13	18	19	12	32	9	21	13	19	16
CATTTTGCGTTCATGG	alt_4502_missing	0	0	0	0	0	0	0	0	0	0
ACACTCTGAACGTTCT	alt_4502_missing	0	6	6	5	2	2	6	1	6	5
TACATTGCTCAGTTCC	alt_4502_missing	20	51	36	27	57	25	56	32	45	28
TTAATTCACGACGTAT	alt_4502_missing	66	116	73	58	76	65	110	40	97	45
CAGAATGTGAAACTGC	alt_4502_missing	0	0	0	0	0	0	0	0	0	0
CCCGGTATCTTATTTG	ref_4502_missing	14	31	24	10	25	11	19	11	29	8
ACCACTCCATGGGTGT	alt_4502_missing	0	0	0	0	0	0	0	0	0	0
AGTTTTTGTGAAGTGA	alt_4502_missing	0	0	0	0	0	0	0	0	0	0
CTCTCATTTCAATTGT	ref_3569_fdr	82	80	93	90	103	76	81	69	90	82
GTTGCACTCAGCCGGT	ref_3569_fdr	53	49	45	58	46	36	37	40	46	45
TCCTATTCTCTGCTAC	ref_3569_fdr	74	92	77	66	103	58	99	64	121	64
AATTTTGTTTGTTAGT	ref_3569_fdr	14	11	17	15	8	16	14	13	16	10
TTTCTGGACTGTTTAC	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GCGCATTGAAATCGGT	ref_3569_fdr	17	9	21	21	14	18	14	20	11	21
GACGGACAACCTTCTC	ref_3569_fdr	90	77	114	96	91	76	66	85	105	91
GTTCGCCCTCGGGGCC	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GAAGAGTTATTCGTTA	ref_3569_fdr	19	27	26	28	27	21	9	22	16	17
TCTACGGATTCTTTTG	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCGTCTTATGTTA	ref_3569_fdr	116	117	156	158	135	125	155	111	142	118
ACCACTTGTGTTCAAT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
AGAGGCTACGCCTCAC	ref_3569_fdr	79	82	71	83	86	65	93	66	88	70
GCATCGGGGTCCATGC	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
CCTACGAGAGGGCGGT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGTGCACTGCAGA	ref_3569_fdr	32	18	14	28	21	21	25	18	23	32
ACGCCGTCACAGGAGT	ref_3569_fdr	2	3	7	0	2	2	5	1	0	2
CCTACCTTTCGCATCT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
ACGTTGCTTTCATTCT	ref_3569_fdr	43	40	33	38	29	34	32	32	39	32
GTTTAGGATTTTGGCT	ref_3569_fdr	27	19	31	24	33	22	23	24	23	31
GGAACAATTCAGCGGC	ref_3569_fdr	14	15	28	23	18	14	22	15	18	15
GCGAATGTGGGACTGT	ref_3569_fdr	43	39	53	37	41	33	34	34	59	27
CTCGCCTTCAGATAAG	ref_3569_fdr	42	39	33	51	42	50	44	43	46	33
TTTATTTGTTCGCGAA	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTTGATTTATGCGTTA	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GGTACGGGACACTCAT	ref_3569_fdr	20	12	21	19	6	17	6	14	11	13
AGCTGTCGGGTTTAGG	ref_3569_fdr	38	38	32	43	41	37	58	32	48	34
GATTATAAGAGCGCGA	ref_3569_fdr	10	11	9	10	10	9	12	6	12	9
ATCACCGCAGCCCACA	ref_3569_fdr	55	81	73	77	64	62	72	49	71	45
ACGTATGTGGTTGTAG	ref_3569_fdr	44	68	74	51	71	55	63	47	54	56
TCACAACCTAGATGAA	ref_3569_fdr	122	122	136	140	126	104	132	111	106	126
GTCCAAGATCTTTTAG	ref_3569_fdr	17	19	24	27	12	23	21	15	23	18
AGCCGTTCAATATTAA	ref_3569_fdr	70	80	81	74	73	56	80	78	68	62
GCTTATCACATCCAAT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
TACCCGGCCCACACTG	ref_3569_fdr	22	34	38	39	27	24	39	20	37	24
TGTTAATTACATATCG	ref_3569_fdr	52	51	66	47	44	38	58	29	63	41
CAATCAAGAGTCTTCA	ref_3569_fdr	13	19	19	11	18	13	15	14	22	15
TAGTATGTTGTCCTAA	ref_3569_fdr	29	34	33	33	45	27	47	22	35	28
TGCGAACGCGCTTCTA	ref_3569_fdr	23	24	45	23	38	18	32	17	31	16
TCTGACTCTCGGGACG	ref_3569_fdr	49	43	66	60	42	32	54	55	52	53
TGATCACAGTACTGGC	ref_3569_fdr	24	18	27	22	21	17	12	8	26	22
ACATATCTAAAGTCTG	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
CGCAGCTTCAAACCGA	ref_3569_fdr	74	57	79	70	74	73	64	59	73	50
CGGGCGCCTCACTCAT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTATCGTATATACGCC	ref_3569_fdr	16	20	17	18	6	13	12	14	8	14
TGTATATCCCCGCGAT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
ATATAGGTCTTCCCTA	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GGCCAAGGGGGGTGTG	ref_3569_fdr	20	13	20	21	28	20	19	18	28	12
GGCGGAATAGCTGGTT	ref_3569_fdr	32	35	56	19	33	40	31	24	27	36
GTCTAGGATTATTGTC	ref_3569_fdr	26	54	32	30	45	32	28	34	31	30
GGGTAATAATTGATTT	ref_3569_fdr	15	12	17	16	15	12	6	12	9	11
GCTGAGGCGCTATAGC	ref_3569_fdr	9	8	10	5	8	7	7	5	3	5
TCGTTTAATACCGTGC	ref_3569_fdr	75	66	81	70	74	57	61	45	73	53
TATGTATAGCGTCAAT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
TCAAGTATTATTTGAA	ref_3569_fdr	29	33	38	38	32	27	38	43	33	30
TCCTATCCTCGCACCC	ref_3569_fdr	61	80	61	54	80	42	81	48	69	27
CGATTTTCCCCTTTTC	ref_3569_fdr	57	61	68	61	69	65	53	53	57	61
AAAGCACAAAGTAGTT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
CATTAGTCACTAAGCG	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGCGTTCAACCTA	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
CCAATATCCTCCTGTC	ref_3569_fdr	217	203	268	183	196	175	231	179	230	176
GTTCCAATGTGAGCGG	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
TGCATTCAGCAGTGTA	ref_3569_fdr	33	62	45	37	52	35	62	35	62	39
ATTTTCTTACCTGTGG	ref_3569_fdr	7	29	5	2	35	10	55	6	33	5
TTCTCAACTTTTAAAT	ref_3569_fdr	10	4	14	4	8	4	5	6	6	6
TCGTTGTATCAATGGG	ref_3569_fdr	60	44	62	50	40	50	56	43	65	47
AACTTTTTGGTGCTCC	ref_3569_fdr	33	24	36	38	23	24	33	32	21	28
TAGCTAACCAGCTTGC	ref_3569_fdr	11	20	13	19	17	12	14	11	11	15
GGTTATGCGCTTGGCG	ref_3569_fdr	47	40	52	45	38	35	42	56	38	33
GTTATATATGGGGCAA	ref_3569_fdr	104	106	145	129	110	116	125	103	120	83
AACGTAGATGTGTATC	ref_3569_fdr	44	56	74	47	56	56	56	40	56	47
TCATGCCTTTGAGTCC	ref_3569_fdr	116	109	162	136	109	117	122	111	139	88
CATTACTAGGGTTATT	ref_3569_fdr	22	13	25	25	8	19	13	20	21	13
ACTAGGTGTTGGACTG	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
CTGCTTTCGATTCTTT	ref_3569_fdr	34	49	57	50	33	35	37	44	47	43
ACTCACTCAGTACGGA	ref_3569_fdr	32	47	53	44	49	37	49	45	63	27
GATTGTCTTCCACCAA	ref_3569_fdr	10	20	26	17	12	10	6	5	17	8
AGCTCATATGTCATTC	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGGAACGGCTCTA	ref_3569_fdr	2	3	1	6	7	6	6	4	3	1
TTCGTGAAACCTATAT	ref_3569_fdr	23	15	20	19	21	19	17	23	21	15
TTCGGCACCACCTGAA	ref_3569_fdr	77	83	88	82	89	67	88	91	82	66
ACTGGCGGATGACTTG	ref_3569_fdr	91	78	83	71	84	61	74	61	94	73
CAGGGGTGTGGGCTTT	ref_3569_fdr	102	116	112	100	129	96	112	104	112	88
TTCCCAGTGTTTGTTA	alt_3569_fdr	7	16	12	9	14	8	19	12	12	5
ATCCTTTTGCCGAGTA	ref_3569_fdr	16	35	29	27	33	26	32	25	38	26
AATGGTTGCTCCCGTC	ref_3569_fdr	18	23	22	28	16	20	15	21	17	25
CGATTAGTGTGCGGGG	ref_3569_fdr	34	44	37	32	35	29	25	27	39	26
ATTCCCGTATGTATGT	ref_3569_fdr	20	15	20	21	18	9	14	12	17	11
TTTGCACAAAGCAGAG	ref_3569_fdr	3	4	11	6	6	4	1	6	8	3
GTCCGCTCCGTGATAG	ref_3569_fdr	63	48	61	75	57	50	50	66	56	58
AGGGCGACAGTAGTGT	ref_3569_fdr	307	310	389	349	310	312	336	235	330	224
TTGTATCTGGATCTCG	ref_3569_fdr	91	83	91	80	108	79	115	68	98	105
AGCGTTAACACTTACT	ref_3569_fdr	4	5	3	5	6	1	7	7	12	5
CGGGACGGGTCTGGTC	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
CTGTTACCTTAGGCCA	ref_3569_fdr	153	151	159	143	148	115	218	112	175	128
GCACCTAATGCGATTT	ref_3569_fdr	81	78	98	94	78	90	99	73	96	72
GTCTTCATCGAGGGAA	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
AAATATGAGTTTCTAG	ref_3569_fdr	8	6	11	15	17	15	12	10	12	6
TTGCGAGTGTGCTAAT	ref_3569_fdr	16	20	29	12	13	15	17	26	18	10
TAAAAGGTACTGTGTC	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTTTTCTAGTTAG	ref_3569_fdr	32	35	36	21	21	25	24	31	25	30
TCTTTTCTAAATGCTT	ref_3569_fdr	8	15	12	9	16	14	10	13	11	13
CGCCTCGAAGCTTTTG	ref_3569_fdr	23	33	39	31	36	26	42	30	37	30
AGGCAGTTAAACAGCG	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
ATAATATAACTTCGTT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
GGCGCTCTTTAAGCTT	ref_3569_fdr	155	145	180	134	124	174	139	149	164	114
AGTCGGGTTTCTCTGT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCGCCTTCGTCGG	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
ACGATCACGGCACCTA	ref_3569_fdr	9	8	10	5	8	7	9	3	11	5
TACCTGTTGTTTTGTA	ref_3569_fdr	25	19	25	14	37	18	35	25	25	19
CTTTGTTCTTGTATCA	ref_3569_fdr	22	32	27	26	50	36	30	30	27	19
CCCATTCCGAGGACTA	ref_3569_fdr	234	222	310	243	232	221	242	201	222	217
CTATTAGTGCCTGAAG	ref_3569_fdr	20	31	30	24	22	16	33	34	33	34
GTGATTGGCGAACCGG	ref_3569_fdr	72	78	90	71	70	63	76	60	72	67
GGTGGTCATTGTAAAA	ref_3569_fdr	15	15	21	21	25	11	17	22	17	15
GCCGTTAGAACCTAAT	ref_3569_fdr	4	5	3	5	6	0	4	4	2	3
TTATCTCGCCCATATT	ref_3569_fdr	119	122	166	137	141	110	127	117	140	121
AACTCAGCACAAGAGG	ref_3569_fdr	1	2	5	7	0	4	1	2	5	2
CCTACCTTCGCACATC	ref_3569_fdr	2	5	1	7	2	6	1	3	1	1
GCGATATCACGTAAGT	ref_3569_fdr	158	149	182	151	174	155	163	148	148	144
GGCCCGACGTTCTGGT	ref_3569_fdr	28	39	48	39	29	41	34	35	43	37
TGGTATGCGCGGGTGT	ref_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTTGAGTCAATGAGGT	ref_3569_fdr	40	27	37	28	25	29	50	23	32	24
GTATAGGCGAGTTGGT	alt_4396_missing	15	27	13	18	33	22	36	15	30	16
ACACCCTTATACTCCA	alt_4396_missing	2	2	0	0	4	1	7	1	1	4
AGCCATGACTGATATA	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
GGCCGGGATACGCTTT	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
ATCGTGTGTATATGAC	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
TCCTATATATGCCTAT	alt_4396_missing	109	169	107	105	165	109	178	103	158	96
CTAAAGCACCGATGGC	alt_4396_missing	24	36	32	32	30	35	46	39	40	24
GGCTGTTAGTTGAGTT	alt_4396_missing	67	107	89	65	134	82	110	81	121	62
AATTCATGTCTAATCC	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
GACACCCGGTTACCCC	alt_4396_missing	20	10	38	20	27	18	17	27	25	20
CGTGTCAAGTGCCGCA	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
GCCCTCTTCATCATTC	alt_4396_missing	35	40	54	28	32	39	42	31	40	22
AAGTCACGCTGCGCAC	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
TTCTGTAACAGTTACT	alt_4396_missing	5	5	8	6	10	1	5	4	6	8
TTTTGATTTTTTTTCC	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTATATGTTTAT	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
CGGGTCACCAGCGCAC	alt_4396_missing	13	27	25	22	21	22	26	13	24	13
GCAGCGCTGGTCTCAC	alt_4396_missing	9	15	10	9	17	10	20	9	18	5
CTAACCTCCTCTGTTT	alt_4396_missing	2	3	4	2	1	2	3	4	6	1
GCCCATCTGATATTGG	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
TATTCGAAACAGTCGC	alt_4396_missing	11	19	11	12	16	9	20	11	15	10
ATGCTGGCCTTGTAAT	alt_4396_missing	54	84	65	50	44	48	80	46	87	49
GATATATATTTACCGG	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
GAGTAACCTAAGCCGG	alt_4396_missing	11	14	15	17	19	22	16	14	29	10
CAACCACCATTTTAAA	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
GGTGCTATGTTTTATT	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
ACACCCCTACTAACGA	alt_4396_missing	13	52	13	4	49	5	46	2	51	3
ACTAGCTTGAGCTGGT	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
CGCTGGCAGCAAATTC	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
TGCCCCGTGCTGCTCT	alt_4396_missing	35	39	30	35	35	20	38	33	32	25
CGGGAAGGAACTGAAC	alt_4396_missing	93	119	89	92	111	87	140	80	140	76
CGCAGTGGATTTTGGG	alt_4396_missing	9	16	8	8	10	12	7	12	11	8
GATCGCATATGGGCCG	alt_4396_missing	23	31	29	24	43	19	30	27	46	28
AGTCCGGGTATCTTTA	alt_4396_missing	15	24	20	11	23	14	26	16	17	11
CACCAGCTCCGCCAGT	alt_4396_missing	0	0	0	0	0	0	0	0	0	0
CGGTGATCCAATTGCT	ref_941_missing	6	5	4	3	4	2	8	5	12	3
GTTGGCAGGTTCGCGT	ref_941_missing	17	38	29	19	41	12	48	26	36	11
TTGGCGCTCCCGTTCG	ref_941_missing	5	14	6	4	20	4	23	6	20	5
GTGGCCAGGCTCACTG	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TGTATGGCAGTATACT	ref_941_missing	3	15	9	8	8	8	9	7	17	1
TCGTTCATTGCGACCA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CTCGGCATGCTGCAAT	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CGTTTGTTAGACTCTT	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CGCATTGAGAGTACGT	ref_941_missing	33	60	33	34	72	22	66	21	82	24
AGTAGACGTCTTGGTT	ref_941_missing	0	0	0	0	0	0	0	0	0	0
AGCGAATGTCTGCTAC	ref_941_missing	21	26	32	20	20	22	21	14	39	14
TCGGCTTCGACCACCT	ref_941_missing	3	3	0	7	3	1	6	0	4	1
AGCGGCATGGCTACAA	ref_941_missing	25	23	23	14	43	24	22	16	32	17
AATTAGTGCTGCCGAA	ref_941_missing	23	53	25	18	39	20	30	24	54	29
GTTTATCGGACTTACA	ref_941_missing	64	142	53	54	134	51	156	58	163	45
AACGTAAGGTCCTTGG	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CTTGTCATAGAGGCTA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTTAAGCCTTGT	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TAATCAACCTTGTACA	ref_941_missing	11	10	14	6	16	3	17	9	17	3
CTTCAAGTTATATGAT	ref_941_missing	4	10	9	10	21	3	23	9	13	7
GCTTCGGGAGACAACC	ref_941_missing	6	8	8	8	19	3	19	1	4	3
GTCTTCGGACCACTTT	ref_941_missing	41	89	50	43	103	40	109	39	118	39
TTGCAAAGATATGGGG	ref_941_missing	5	8	3	6	13	6	8	2	9	7
ACGGGCTGCTTGTTTT	ref_941_missing	15	15	17	9	14	11	22	9	23	11
TAACTCCTAGAGGCTC	ref_941_missing	15	31	19	10	22	19	25	5	32	14
CACGCAAGCTATCGCC	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TATTTCGGTACTATTA	ref_941_missing	1	9	8	2	12	3	15	4	16	11
CTGCACCTGAATCGTC	ref_941_missing	3	3	1	1	4	2	3	1	3	0
GTGCCCTATTGGGTCT	ref_941_missing	22	58	19	15	53	27	60	13	41	25
GTTTTCGCCCTTGACG	ref_941_missing	0	0	0	0	0	0	0	0	0	0
ATCGGGCTTGTTAGAT	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TACTCTGCTAATGTGT	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TCGCCTATTCCACGTA	ref_941_missing	32	52	20	22	40	30	53	27	45	23
TCTCTTGATTAGCGCA	ref_941_missing	8	20	17	11	17	8	19	8	17	10
AGTCGGGGTTGGTTGA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TGCATTAAACGTCTTA	ref_941_missing	3	14	10	4	17	5	19	3	28	6
TCCTCGGCTTTTCGTC	ref_941_missing	13	14	15	9	8	2	23	5	17	6
ACACTCTCCCCGTCTA	ref_941_missing	0	12	0	0	5	0	3	0	11	1
CCATGAACAGGCGTTG	ref_941_missing	0	0	0	0	0	0	0	0	0	0
GCCGCCTTTATGAACT	ref_941_missing	8	4	8	8	7	3	11	3	11	3
CGTCTGCAGTCTCAAG	ref_941_missing	0	0	0	0	0	0	0	0	0	0
ACAAGTGCCGGTTTCA	ref_941_missing	18	37	25	15	33	13	52	20	37	15
ATCTCGGTATCGTTCT	ref_941_missing	0	1	1	2	2	2	0	1	3	4
TACTATTCCGACTATC	ref_941_missing	3	4	2	3	14	9	9	4	11	6
ATCTTTTTTTCTTCAG	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TTTTTGGGTGGATCTA	ref_941_missing	6	17	9	8	10	8	11	2	19	6
TTGCCCACCGTTTTGC	ref_941_missing	6	15	5	3	10	2	7	3	14	4
TCTTAGGTTGGACGGC	ref_941_missing	28	71	40	24	78	37	66	38	74	29
GCCGTGTTGCGCCTCG	ref_941_missing	15	31	25	11	35	13	37	21	43	20
GTTAGCCCCCGGTGCT	ref_941_missing	0	0	0	0	0	0	0	0	0	0
GCGCATCTGAGGTTGG	ref_941_missing	11	8	7	7	15	8	21	9	21	10
CTCCCTTGTGCCAACT	ref_941_missing	4	24	9	0	21	5	25	6	21	4
TCCAGATAGTGATTCG	ref_941_missing	6	3	7	1	5	4	9	2	6	2
GCGTTTACCCATTACA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
GAATCTCTCTTTGAGA	ref_941_missing	14	23	24	16	44	20	38	14	38	8
AATCAACTTCGTGAAC	ref_941_missing	5	13	11	14	11	8	15	5	14	6
GGCTCTTGTGCGACAC	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CCGTCTGACGGTCAGG	ref_941_missing	1	6	1	3	4	1	12	3	4	3
GGACCGTATTACTGCT	ref_941_missing	3	8	5	0	9	3	12	5	5	0
TGCAAAAGTATGCTCC	ref_941_missing	14	21	13	6	23	11	23	13	17	4
AGCACTTCGTATTTAA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
ATGGTTTCGTTCCCCA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
AATTCTGTTAGTCGCC	ref_941_missing	0	0	0	0	0	0	0	0	0	0
GATTTTGGGCCTACTA	ref_941_missing	4	10	3	6	9	5	7	5	5	6
ACGCCATTAGCGGTGG	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TGAGTCAATTAAGGTT	ref_941_missing	31	62	34	34	58	35	67	21	65	26
GGATTTCCATCTGGCA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CGTAGACAGCTCGAGC	ref_941_missing	13	12	15	14	13	17	18	19	25	15
GATGACTTACTACAGA	ref_941_missing	17	36	25	23	19	17	34	8	46	16
GTTCCATTGGTCCAGC	ref_941_missing	0	1	1	0	2	1	1	3	3	2
TCTAACATGTTAAAGT	ref_941_missing	9	19	8	8	9	11	20	11	17	3
GAAGACGAACGTTTTG	ref_941_missing	19	41	26	18	48	26	47	27	42	16
GCGCGTAGGTCTTGGC	ref_941_missing	0	0	0	0	0	0	0	0	0	0
AGTGAAGGCATACTTC	ref_941_missing	12	22	19	16	21	10	23	6	26	6
TTCGTTGAGGCTGGGT	ref_941_missing	14	24	15	18	35	12	37	16	27	18
CCCAAAACGCAGTGCC	ref_941_missing	0	0	0	0	0	0	0	0	0	0
TTTATTAACCGTTGAA	ref_941_missing	0	0	0	0	0	0	0	0	0	0
CATAACTCCATGGGTC	ref_941_missing	19	52	27	27	55	19	53	21	45	27
CATCGGCGCTTCGAAT	alt_2009_RC	19	12	9	15	24	6	14	14	13	15
TTTACGCCGTCTTCTC	alt_2009_RC	84	110	98	116	116	75	115	106	119	93
AATTTTTATTAGAAGG	alt_2009_RC	57	88	108	93	90	62	82	67	76	63
ACGCTACAATTTCGAC	alt_2009_RC	5	20	5	13	9	13	18	14	14	7
AGCTGCTGTACCGTGA	alt_2009_RC	5	13	5	2	5	6	8	4	2	10
CCCTCTCTCATTCTCT	alt_2009_RC	5	4	11	7	7	5	5	7	8	2
TGATGCCAGCAAGCTA	alt_2009_RC	146	167	171	141	158	133	177	121	197	130
GGGGTTGTCTTTCGGA	alt_2009_RC	17	22	20	31	24	29	34	25	22	13
TTATTATTATAAGTCT	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
ACCGGGCCGGATAATT	alt_2009_RC	47	39	71	55	50	40	35	29	47	36
TTTTGGCCATTTCCGT	alt_2009_RC	14	10	15	17	13	6	18	13	14	11
GAGGACCAGGTCATTC	alt_2009_RC	37	41	57	53	53	36	65	27	60	30
GGTCCACGGTTTAGAA	alt_2009_RC	34	51	50	36	49	20	39	39	50	27
TTATAAATTGCTACCC	alt_2009_RC	16	22	24	20	30	15	23	19	30	18
GACCAGTCCGTTGCAA	alt_2009_RC	19	29	27	21	19	20	22	15	30	19
TCAGCGCTGTCTTTTG	alt_2009_RC	37	41	21	20	41	28	57	45	45	24
ATCGGATAGCTCGCAG	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
CTTGCTTTCCTCGATT	alt_2009_RC	133	141	129	114	127	95	173	101	132	100
GTTTGGGACAAAATAT	alt_2009_RC	34	41	44	41	40	33	61	36	42	41
ATGCGCGAATGTGACC	alt_2009_RC	8	10	7	5	16	1	5	5	10	5
TGGCAGACGGTTAGGA	alt_2009_RC	19	15	28	23	23	19	29	19	18	25
GTATATTTGTATCTGT	alt_2009_RC	45	51	71	36	51	53	61	37	55	34
ATGCGCCTGCGATTTA	alt_2009_RC	18	22	10	22	19	16	22	14	25	17
GCTGGTCTTTGAATGA	alt_2009_RC	47	43	62	45	44	44	51	48	55	42
CCTTTACGGAGGAGAA	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
TTGGTAACTTCGCTCG	alt_2009_RC	57	75	57	54	61	52	57	40	53	36
TTGAGTAGTTATAAAA	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
TGCTATATTCCCCGGT	alt_2009_RC	6	14	14	6	17	3	24	9	32	4
GGTCATTCGAACGCAA	alt_2009_RC	46	53	56	52	68	54	61	49	44	38
ATGTTCCCGATAACGT	alt_2009_RC	65	52	85	71	96	47	64	63	62	56
TTTCTACTCGATAATG	alt_2009_RC	80	96	93	90	100	95	98	90	87	77
TATATCATTAACAGTA	alt_2009_RC	41	36	41	45	53	35	35	38	51	37
TGCCTGTTGAATCGAT	alt_2009_RC	25	35	27	20	24	11	26	7	41	18
TGTGATAAGTGTCTAG	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
TTGTTTCGACAGATGT	alt_2009_RC	29	27	36	29	20	23	20	37	19	22
TTGGGTGTAGCGGGAC	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
CATAGTAGCGGTATGG	alt_2009_RC	62	49	59	44	60	60	65	45	66	37
GCAATGTTCCACGTAA	alt_2009_RC	37	38	42	40	46	36	55	34	54	38
GTGCCTGACTATTGGG	alt_2009_RC	20	16	9	12	15	18	13	17	20	10
CGTATCCGGTAGCTTC	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
GAAGTCTACAGACGAC	alt_2009_RC	0	2	0	0	3	0	2	0	0	3
CGGTTCCTGCGACTCA	alt_2009_RC	40	49	42	43	45	49	43	44	45	44
TTTTAGCAATGTTCAC	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
ATCCTTGGGGTATTTC	alt_2009_RC	117	174	151	146	187	117	187	116	161	99
CCCTAGTCTCGTATGA	alt_2009_RC	54	72	46	47	60	39	76	35	61	31
TATCGCCGGTTTCTGT	alt_2009_RC	18	16	19	19	19	27	18	18	20	20
TGTCGTGCATAGCAGC	alt_2009_RC	25	22	36	22	18	12	20	20	30	17
GCCTTTCGCTGCCATT	alt_2009_RC	15	13	13	26	16	12	12	12	15	16
ATTGAGGGATACGCTC	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCTAATATCTGA	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
CAGAACCCACTTAGTC	alt_2009_RC	47	68	60	58	82	46	77	54	108	52
TCTCTAATTCGGCTCG	alt_2009_RC	5	8	13	7	3	12	5	3	3	3
CTCGACTTCAATTAAC	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
AATGGGACATTGCAAT	alt_2009_RC	0	0	0	0	0	0	0	0	0	0
GACTAACGGTCTTCCG	alt_168_missing	5	5	1	2	6	2	3	3	6	4
GTGTCCTATGGGTTCA	alt_168_missing	0	0	0	0	0	0	0	0	0	0
TTACATGCCGAGACCG	alt_168_missing	30	44	39	31	41	32	61	38	35	32
TTCTTCGGGTAAAGGC	alt_168_missing	6	9	3	5	7	6	4	11	7	5
CTCATGGCTCCTATCG	alt_168_missing	10	13	20	19	18	12	8	10	9	11
TATCAGCTTTGCAGGG	ref_168_missing	13	14	5	6	19	8	18	5	27	3
TTCTCGGGCCAGGACG	alt_168_missing	207	246	213	198	240	166	276	177	233	149
CCAGTCTGGTAATTGC	alt_168_missing	0	0	0	0	0	0	0	0	0	0
CTCCCGCATCTCAAAC	alt_168_missing	1	1	0	0	0	0	3	0	2	0
CTGTCATGGCTACTGT	alt_168_missing	5	8	12	7	6	4	3	4	13	5
GGCAAAGTCGTTATCG	alt_168_missing	26	52	35	25	44	32	56	26	56	23
TGTACTCTTATTTCGA	alt_168_missing	28	26	41	32	35	19	27	23	31	20
GCAGTGGTTTGGGCTC	alt_168_missing	50	88	60	66	99	48	119	55	106	51
GCCGCTCCCGAATCGT	alt_168_missing	0	0	0	0	0	0	0	0	0	0
AGCTCTTTCTAGGGTA	alt_168_missing	10	14	14	19	20	12	18	8	16	8
TCAAGTAGTCATCACT	alt_168_missing	0	0	0	0	0	0	0	0	0	0
GATACGGGTTGTTGCT	alt_168_missing	83	82	92	75	111	66	81	69	104	73
TTAGCACAGACTGATT	alt_168_missing	35	50	46	33	46	36	47	34	43	23
GTTATGAGAATTGATG	alt_168_missing	0	0	0	0	0	0	0	0	0	0
TCTGTACATAACTATA	alt_168_missing	11	8	7	6	10	5	7	1	9	2
GGCGTTCTCGTAGATG	alt_168_missing	0	0	0	0	0	0	0	0	0	0
CAGGGTGGTGCTTGGT	alt_168_missing	15	20	23	16	21	16	34	21	30	19
GGTACATTCACGGCGT	alt_168_missing	8	21	17	12	20	11	12	8	25	14
GGGTCATAGCGACGAT	alt_168_missing	60	95	82	77	76	65	101	85	104	58
ACGTGTTTGCTTGTCT	alt_168_missing	16	27	19	7	21	9	28	18	21	15
CATTTCGTAATCCCTC	alt_168_missing	52	105	96	64	86	68	99	54	107	48
AGATGTGTCTACCCGT	alt_168_missing	11	24	19	12	19	14	22	7	17	14
TGTGTGCCATCTCGAC	alt_168_missing	20	27	20	26	34	15	31	19	34	21
ATTTCCCCACTTCCCG	alt_168_missing	43	55	42	39	52	34	58	35	71	24
GGCAAGGATGGAATTT	alt_168_missing	9	9	10	15	16	9	24	7	19	8
AGCTGTTACTGTTCAC	alt_168_missing	0	0	0	0	0	0	0	0	0	0
ACATGAATCTTTTTTG	alt_168_missing	17	31	18	25	33	24	34	20	31	19
TTACTGGTGGTGTTGT	alt_168_missing	0	0	0	0	0	0	0	0	0	0
CTATCTGGTAGCGACA	alt_168_missing	96	144	108	104	132	89	159	85	147	82
ATTAGCGTCTGAGACA	alt_939_reverse	25	23	21	7	37	14	28	12	20	9
GCATCGGTTGTACCGG	alt_939_reverse	19	29	17	9	32	18	34	15	47	14
CGACAAGTTAACGGGA	alt_939_reverse	19	27	26	21	35	29	45	20	41	30
TCAGGCTATGTTGAGA	alt_939_reverse	5	21	18	9	34	10	28	15	30	13
CTAGTAGTAAATGCTG	alt_939_reverse	12	43	19	19	30	12	31	19	35	18
TAGGCCATAAAGATAG	alt_939_reverse	22	49	31	26	42	34	51	24	54	24
ATCAAGTCCAAAATTG	alt_939_reverse	8	11	8	8	8	4	9	3	12	13
GGGTTTCCTGAATGTC	alt_939_reverse	28	24	29	16	18	21	33	19	47	18
TCCTGCATCTTTCCTA	alt_939_reverse	12	9	14	20	23	20	25	12	13	11
TCTATGGAGTGCGGCA	alt_939_reverse	10	27	17	17	21	8	37	12	21	9
ACAATGAACACCTAGA	alt_939_reverse	19	27	28	19	38	13	42	32	37	15
GCTTATTTCTTCATTG	alt_939_reverse	2	4	4	0	9	3	6	2	6	3
TTACTGTCCTTATGTA	alt_939_reverse	31	56	43	37	41	42	62	29	64	28
GGGTTCCAGCGTCCTC	alt_939_reverse	2	1	2	1	0	1	6	3	6	0
TCATAACCGGCGATGC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
AGAAACGTCACCTTTT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAAAGCACTTTTG	alt_939_reverse	8	8	9	8	11	4	10	5	12	4
TCGTCACTTCATGTAA	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
TTATTTCGGTTACGGG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
AACCCGTTATTGTGTC	alt_939_reverse	2	2	1	8	4	2	4	1	7	1
AATGGTTGGCTTTTGT	alt_939_reverse	25	24	23	25	29	13	46	15	27	11
GTCTCGAGTGGGTCTC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
CACGTCCGTCTACGTA	alt_939_reverse	29	61	33	34	59	24	66	26	53	28
TCTACGGACACCCCTT	alt_939_reverse	9	15	8	13	7	12	11	14	10	7
TTCTGATTGTCATATC	alt_939_reverse	25	50	50	36	43	31	46	33	50	18
TTTTCCGTGCTCCTAC	alt_939_reverse	24	29	32	21	40	24	39	24	46	28
AGTGCCAGCACTGGCT	alt_939_reverse	17	20	14	10	12	12	22	8	23	11
ATTGCTTCAGCATGTG	alt_939_reverse	20	40	32	19	48	24	55	18	51	31
TAATTGGAGACAGTTA	alt_939_reverse	7	9	9	10	18	10	15	7	18	13
CCCATGATATGCTTTT	alt_939_reverse	39	69	45	29	69	42	60	34	59	29
TTTATTTCTGAAAATG	alt_939_reverse	6	5	6	4	8	6	11	6	8	3
GCGCCGGGGACGATGC	alt_939_reverse	15	25	22	11	30	15	30	17	27	21
CTCTTTTCGCAGGTGG	alt_939_reverse	62	68	60	36	70	51	53	46	64	44
AGAGTCCCTTGTTTAG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
CGCCTTTGTTGGTTGT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
CAACTCACAAGGTCTT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
TGGGTGGTTTTGTGTT	alt_939_reverse	55	70	53	51	85	50	68	41	84	40
TAAAACAGCGGATATC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
ATTCTTGATGATGGCA	alt_939_reverse	86	95	83	54	102	58	121	83	117	76
TGCGCTCTAAGATTAA	alt_939_reverse	9	10	10	5	14	8	18	12	20	7
ATGCACTCATCTCGTA	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
ACTATACAAATTCATA	alt_939_reverse	141	224	169	144	245	147	267	162	219	140
ACTACCTTTAAACGCT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
CGTTGGTCTAAGGACA	alt_939_reverse	2	9	3	7	11	3	19	7	4	5
TTGCCATATGGTATAC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
AAATTCCATTCTACGC	alt_939_reverse	24	39	25	24	43	23	30	23	40	29
TTATTTGGTATCTAAG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
TATCTCGTCTAACCGG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGATAAGCCTTGG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
GCTGGACTAGAACTCC	alt_939_reverse	0	12	0	2	17	1	11	1	11	2
CAAATGTCCTTTTACT	alt_939_reverse	20	33	30	14	43	17	28	10	30	21
TGCATACTGAATCTGC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
GGCATCATGGTAAATG	alt_939_reverse	20	46	30	38	44	33	47	33	50	40
CCAGGGCCTTTACCCC	alt_939_reverse	2	4	5	5	7	6	6	2	5	3
AAGATGATTTAATATA	alt_939_reverse	36	51	48	38	52	49	47	26	47	36
ACGCCATGGTAATGTG	alt_939_reverse	31	45	48	32	72	27	47	23	62	24
GAACTCATAGTTTGTG	alt_939_reverse	3	9	7	6	5	7	13	4	7	3
GGTCTGTATCCGCTCT	alt_939_reverse	2	7	5	4	4	1	4	6	7	2
AACGTGCCTTTAGTCT	alt_939_reverse	38	54	36	31	62	37	45	19	56	21
GCATACGGCGCCAGGC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
ATCACCACCGACGACC	alt_939_reverse	48	75	30	42	86	40	81	35	76	39
ATAACAGGATTGCGGC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
TGACCCGTTCCTGACC	alt_939_reverse	8	9	6	2	12	3	11	4	5	4
TTTCCTTTTTTTGGGT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
AAACGTCTCGCAAGAT	alt_939_reverse	32	51	41	51	63	36	62	31	49	28
GTGATTAGTTCGTAGT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
ACCGACTCACGCGCGC	alt_939_reverse	5	1	1	1	4	2	6	2	4	3
CATTGGGTACCGCATG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
AACCTGATCCTTTGTT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
ACCCATAATGGGAGTT	alt_939_reverse	8	14	3	5	4	7	10	4	11	2
ATCCGCTTATAGCACT	alt_939_reverse	10	10	8	12	5	4	10	4	13	6
TGTCCTGGCATCGTCG	alt_939_reverse	28	43	32	17	42	13	34	20	45	21
AGAACCCCCAAATGAT	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTGCGTCAGGAGG	alt_939_reverse	6	16	7	2	11	7	9	9	14	5
CCTACCGCATGAGAAC	alt_939_reverse	13	28	11	14	18	15	27	13	26	15
CGAACTGTTCTCAAAC	alt_939_reverse	11	18	15	10	21	7	26	4	28	12
CTTCAGGCCTACAGTC	alt_939_reverse	0	2	4	0	3	2	5	2	4	1
TGGAATAGGCGCCAGA	alt_939_reverse	1	1	2	0	2	2	5	1	5	2
TACAGTAAACGGTGTA	alt_939_reverse	6	10	5	6	9	7	8	1	11	2
ATCTTTCGACTCTTCT	alt_939_reverse	20	34	21	24	44	17	51	25	42	23
CCGACAGGCGGCGTGT	alt_939_reverse	15	16	8	8	22	9	27	11	27	12
CAACGCGGTATTAGCG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
GGTTAGGCCCGGCGCC	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
CGCTCTTGGTTTGTTC	alt_939_reverse	4	10	4	2	9	3	3	4	5	3
CTTCACTTCATCCTTG	alt_939_reverse	54	80	69	49	68	43	97	60	84	62
AGCTTTTGGCAACCGC	alt_939_reverse	44	49	62	34	62	45	60	47	68	37
GGCAACTGTCTCTCCC	alt_939_reverse	5	7	9	8	5	3	10	4	12	2
GGTCGGCTAGGTAGGT	alt_939_reverse	5	8	2	0	6	5	6	4	5	5
AACATCCACCTGAAAG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
CGTCTATACACGGATG	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCTTTCAGAATTA	alt_939_reverse	25	62	27	23	36	22	41	27	35	20
TGTTTCCCTGTTGTCA	alt_939_reverse	0	0	0	0	0	0	0	0	0	0
TCCCCGGCCCTAACTC	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
ATAGGGCTCGGCAGAT	ref_2942_missing	19	20	16	21	9	20	18	19	17	8
CCGATGTGACTTTCGG	ref_2942_missing	11	50	13	7	48	9	45	10	65	5
ACCTTAGAAACGTATG	ref_2942_missing	19	26	22	24	22	10	38	28	32	21
TTTAACGGGATTCTTT	ref_2942_missing	29	25	48	34	32	32	41	40	44	29
ACGTATGAATGCTAAT	ref_2942_missing	163	203	173	165	187	155	178	138	237	147
TAAGATTGGCATGAGA	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
CCCACTTTCTGATATC	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
ACCTTGTATCGATCTT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
TCCGATTTGTGAGAGT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
GTTCGCACACCTGCCC	ref_2942_missing	8	8	11	12	15	6	11	9	10	4
TTAGTTTAGCAATAGT	ref_2942_missing	1	1	1	5	2	1	3	3	3	4
CGCCAAGCGAAAGATT	ref_2942_missing	55	58	61	46	62	41	62	58	65	57
TATATGTACTTATGTC	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
TCTCCACAATAATCGT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
ACAGATTTGATAGCCG	ref_2942_missing	44	56	62	30	31	40	62	41	51	32
GCCAGTGCTTTCCCGA	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
CTACCTCTTAGCTCTA	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
CCTAAGCTAACTCTAA	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
CCCTCACGGTGTAGGC	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
GGATCGGGTTTCTGCG	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
CCCTGCCTTTACTTCG	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
TACAGTCATCTATCAC	ref_2942_missing	46	54	61	27	64	42	52	28	69	43
TGGCTGGGTCCTTTAT	ref_2942_missing	53	67	57	49	53	36	66	34	68	30
TTAGCATCTAACCACA	ref_2942_missing	43	53	57	51	57	37	75	47	47	41
GGTTTTGGCCTGTTAT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
AAGGTAGTGTGGTTAC	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
CCTACTCCCTCAGGGT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
GCATTTAGGTTAATTT	ref_2942_missing	23	15	15	16	17	12	28	15	33	10
ATTGGGGGGGGTCACC	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
GGCTGCGCCTGTTTCA	ref_2942_missing	17	20	17	17	18	17	18	15	17	8
CTGGGCACATACCGTT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
GCTTTTACCTGCGAAT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
TTTAGACCCTAGTTAG	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
CCTGCATCACGGTGCA	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
GTTGCACATTTTAGTT	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTTGGGTCTCAC	ref_2942_missing	6	15	15	6	17	8	22	11	19	8
ACATAGGCTTTACGCA	ref_2942_missing	0	0	0	0	0	0	0	0	0	0
ATCTTTTATCACACGG	ref_5905_new	0	0	0	0	0	0	0	0	0	0
GGGCTTCGCACAGCTC	ref_5905_new	11	11	19	7	22	14	13	12	14	12
TCATGGTGTATTACAT	ref_5905_new	10	5	5	9	14	12	9	8	20	6
AGTTTCGTGCTCAGTC	ref_5905_new	18	16	27	12	15	18	23	21	22	8
AACACTCGGTTTCCGT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
TGTTACAGTGATGAAT	ref_5905_new	24	24	24	27	28	30	19	19	24	15
CTCCAGAAATACTTTA	ref_5905_new	36	78	39	43	82	26	42	34	49	39
CGATCCACCCCGCTGG	ref_5905_new	37	47	42	30	37	27	53	43	41	23
GGTCAGGGGGGCTGGA	ref_5905_new	20	48	35	33	32	35	41	33	42	34
TTACTCTTTTCCATTT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
TCCCGGGAGGGTATCT	ref_5905_new	45	48	35	35	59	25	39	44	72	36
AATCTTGGTCTTCAGG	ref_5905_new	0	0	0	0	0	0	0	0	0	0
ATTTGGAGTTCGCCAT	ref_5905_new	1	18	12	5	8	7	13	8	15	7
TCAGTCGCGCCTACCC	ref_5905_new	0	0	0	0	0	0	0	0	0	0
TGTTAGTGAGCGGTTA	ref_5905_new	10	17	14	8	21	23	18	12	22	11
TTAGTTAATGATTATC	ref_5905_new	0	2	1	1	0	1	2	0	0	1
CATCCCTAGTAGTATT	ref_5905_new	6	11	4	5	7	5	7	6	9	9
GGACGCACTCCGCGTG	ref_5905_new	10	35	6	9	36	12	38	4	31	6
AGTAAACGTTTGTTCC	ref_5905_new	0	0	0	0	0	0	0	0	0	0
TTTCCGCCGCTGCTCT	ref_5905_new	14	33	16	20	35	19	24	14	30	17
CACCTGTTTGCCCTGG	ref_5905_new	53	97	54	39	95	49	96	42	109	61
GATATGACCCGGCCGC	ref_5905_new	16	28	27	22	30	19	33	20	37	17
AACCGCCAGGCTCGTT	ref_5905_new	63	85	63	63	92	56	90	55	109	43
GTACACCTGTGCTGGA	ref_5905_new	3	8	3	4	8	6	7	6	9	5
GAGTTCGTATCCGATA	ref_5905_new	11	24	21	26	19	16	26	22	18	16
TGCACTGCTGTTGTTT	ref_5905_new	53	72	66	57	100	55	86	60	85	54
TACGAGGCGCGCAGCG	ref_5905_new	1	0	0	1	1	0	0	0	5	1
ATAACCAAGCTGAGGC	ref_5905_new	0	0	0	0	0	0	0	0	0	0
CTGGGCCCTTCATGCC	ref_5905_new	25	29	10	17	11	8	14	20	29	17
TGGTCGAGGCGCACTG	ref_5905_new	12	8	18	12	16	10	23	5	13	15
AACGTATTTGGGAGGG	ref_5905_new	51	91	59	37	79	72	74	52	118	39
ACGTCTATGAGTAATA	ref_5905_new	14	25	17	14	21	15	14	11	32	15
CTCGGGCCCGGTCTCT	ref_5905_new	38	50	55	30	69	58	64	40	65	37
CGAGTCCAGTGCTCTT	ref_5905_new	55	88	71	58	90	63	76	42	76	47
ATTAAGGCATAGCTAT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
ATTTCGTATATAGGTT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
CGGAATATGCCTTTGT	ref_5905_new	35	40	21	26	31	21	41	26	40	19
GGGATTTTTGACTTCC	ref_5905_new	32	48	37	34	46	40	41	43	56	34
TATCAGGCGTCAAATT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
CCCCACCTAAAAGTGC	ref_5905_new	14	71	41	26	65	21	55	32	59	17
CCCTGTATAAGTGCCA	ref_5905_new	0	0	0	0	0	0	0	0	0	0
TTCTACTATCGTCGCG	ref_5905_new	0	0	0	0	0	0	0	0	0	0
TTTCGGGGCCTAGGGG	ref_5905_new	0	0	0	0	0	0	0	0	0	0
AGAAGAGTATTTTTTG	ref_5905_new	48	42	48	25	37	21	52	22	44	29
CGACTTGAGGTTTACT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
ACCGCTCGCAACCAGA	ref_5905_new	41	50	44	26	67	32	61	62	60	41
AATCTGTCCTTGAAGG	ref_5905_new	22	30	22	6	17	14	18	10	22	11
TAGCGATTCCTATAAC	ref_5905_new	1	1	2	2	4	0	1	1	1	3
TCACCCTCACGATGTC	ref_5905_new	61	82	99	57	99	69	86	70	93	61
CTCTTGTAAAGTCCTT	ref_5905_new	17	22	27	19	30	15	31	10	28	8
ATTGAATTGAAAGCGG	ref_5905_new	0	0	0	0	0	0	0	0	0	0
AGCAGCAAGTAGTGTT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
TTTTTCTGTGATTTTC	ref_5905_new	17	9	14	8	14	2	14	10	7	8
TGGGTCTATCCTTTAC	ref_5905_new	0	0	0	0	0	0	0	0	0	0
GATTGGAATTCACCCT	ref_5905_new	50	67	45	45	51	53	47	32	56	50
GTGTGGCATTAGCGCA	ref_5905_new	0	0	0	0	0	0	0	0	0	0
GGGAGAACGCCTCGTA	ref_5905_new	0	0	0	0	0	0	0	1	1	1
AACAACCCTGCAGACA	ref_5905_new	38	56	44	25	44	34	61	44	74	30
TGTTCGTCCCGATCGG	ref_5905_new	12	4	8	12	11	9	14	9	9	7
CTTCCTCGTTGTTTAG	ref_5905_new	5	11	9	11	9	13	14	10	17	8
GCGATAGGATTTCTGA	ref_5905_new	179	206	229	181	247	163	211	189	228	177
ACGCCCGTCCTTTGTT	ref_5905_new	0	0	0	0	0	0	0	0	0	0
ATTCGGTTCGGCAGAC	ref_5905_new	151	130	165	130	144	112	150	129	176	107
ACCCTTTCTTCACGTT	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
ACAAAACCCGGTAGTC	ref_790_upstream	66	65	130	81	83	62	69	70	69	57
TGAGAAAGTTGTGTAT	ref_790_upstream	121	72	127	115	69	135	76	113	72	85
AAAAAGCAACGCCCTA	ref_790_upstream	32	17	58	51	22	51	33	23	23	30
TTTATCCTTCCTAAAC	ref_790_upstream	75	55	90	113	48	89	41	76	51	74
GGCTAGTTCATCTAGT	ref_790_upstream	6	5	8	10	3	5	1	2	3	2
ATCGGACACGTACGGT	ref_790_upstream	142	85	168	133	81	109	105	115	114	98
ACGCTATTATGGCATT	ref_790_upstream	75	64	102	86	64	59	69	59	74	63
TATTCTATGACAGTAG	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
CGCGTCCAAGTTGGTC	ref_790_upstream	12	18	11	6	11	4	32	13	20	4
TATGCTCGGAGCTTCC	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
TTTTCCGGCCTAGAAT	ref_790_upstream	104	59	133	127	72	103	56	93	62	97
CCGTAAATAGACTGTA	ref_790_upstream	118	51	124	114	57	83	70	80	58	98
CTTTGCTCAGAACCAC	ref_790_upstream	36	16	47	31	24	28	21	31	29	33
ATCGTAAATCTGAGTA	ref_790_upstream	338	201	381	377	181	310	228	267	204	311
CGAGGCAGGCCTTCTT	ref_790_upstream	47	28	34	65	18	36	18	41	26	42
GAAAGAACTTAGAGCC	ref_790_upstream	138	99	165	130	81	131	80	109	85	135
CGATTCACTCCCATGA	ref_790_upstream	130	268	135	148	224	106	270	123	257	95
CCTACGGGGTTGTTTT	ref_790_upstream	274	216	367	322	223	264	223	282	234	219
CTTGCAAACATACGGT	ref_790_upstream	86	57	113	82	37	93	56	75	57	95
CTTTTACGATGACGAA	ref_790_upstream	410	225	447	393	263	356	234	367	260	314
TTCGGACCTCCTACCT	ref_790_upstream	42	35	56	43	33	32	30	48	25	47
GAACTCTCGACTTTCC	ref_790_upstream	23	23	21	58	29	20	31	26	29	24
TTGGGTTCCTGGAGGT	ref_790_upstream	20	25	32	32	28	23	12	36	17	34
TCAAAATAGTTGGTGA	ref_790_upstream	23	16	36	19	15	19	6	19	10	16
TGTCGACCCCCTTTAG	ref_790_upstream	60	41	47	49	39	37	29	37	24	40
GTGCTGGACTTCTAGA	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
TCACTGTGTCCGGCAG	ref_790_upstream	8	11	19	24	12	11	9	14	7	17
GAGCTGCGTATATATC	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
CATGGGTCCCGTCTGC	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
ATGGTTATTAATTTAG	ref_790_upstream	95	73	160	113	86	91	62	90	90	95
GTAGCTTGTATATGGC	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
TAGCGGGTCCGTCGAG	ref_790_upstream	14	5	15	7	8	8	10	12	15	12
ACAATGAAAATGGTTG	ref_790_upstream	11	17	15	15	11	15	15	7	11	23
GGTAAATTCGTGCATG	ref_790_upstream	29	22	27	25	16	40	20	31	22	27
AGAGTTCTGGAGAGAT	ref_790_upstream	32	16	23	23	17	8	24	24	26	18
TGTCCATGTTCATGAG	ref_790_upstream	10	5	8	6	4	2	4	3	8	10
GTTTCAGTGGATATAG	ref_790_upstream	48	32	62	43	42	60	60	44	41	56
CGATGCCGATGGAGTT	ref_790_upstream	37	30	77	55	34	45	33	58	43	55
GATTTGCCGTGAATCT	ref_790_upstream	66	45	94	72	29	70	39	59	48	44
CTATCGTCACTATATC	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
TGGGATTTTGCTTCCG	ref_790_upstream	77	48	99	78	62	71	57	51	64	53
TGTAAGCGCCGGTTGC	ref_790_upstream	8	4	5	7	9	8	7	6	10	8
CACCCGTGGCTACATA	ref_790_upstream	176	110	203	219	169	167	143	148	138	178
GTCCGAAGTTCTGCCG	ref_790_upstream	120	71	163	155	87	137	85	136	81	144
ACAACCACTGGCTGCA	ref_790_upstream	24	27	19	22	16	19	21	22	19	19
AACATTTTGTGGATTC	ref_790_upstream	96	50	125	111	60	84	64	90	53	92
TCCAGGGAGTCAGCTG	ref_790_upstream	151	71	157	126	89	94	66	117	74	91
TACACGGTACCTAGCA	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
TGCTGTGTCATTTATC	ref_790_upstream	40	24	70	31	27	47	25	51	19	38
GGCCGAAAATACTGCC	ref_790_upstream	83	66	84	91	53	72	52	55	63	60
GGTACACCACTCGTCG	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
GTTTTTGCCTTCGTAG	ref_790_upstream	527	361	624	577	352	520	371	457	338	430
AGACCAATACGTTTTC	ref_790_upstream	65	37	63	45	66	46	50	59	52	51
TGGCCATGTATAACGG	ref_790_upstream	52	44	66	55	30	67	29	49	51	51
TCTGCACCAGATATAG	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
CCTCCAGGGTGGTGGC	ref_790_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTCGTGATAATTG	ref_790_upstream	8	12	24	27	10	15	11	14	10	8
AACCTCACACGTTGAC	ref_790_upstream	106	77	116	109	63	87	76	101	74	93
GACTTCCCCAAAATAT	ref_790_upstream	85	112	112	89	118	74	120	69	117	56
GGATCTCTGTCTATTT	ref_790_upstream	147	107	210	184	74	184	101	153	120	146
GAGTACTCTGCCGAGT	ref_790_upstream	36	28	34	22	23	33	25	48	29	26
TCCCTTTCTTCACGTT	ref_790_upstream	37	129	57	41	119	43	107	31	106	44
ACATATGCTTTTTACG	ref_790_upstream	80	63	97	81	52	72	67	63	84	75
ATCGATTAAATACACT	ref_790_upstream	56	101	75	73	88	59	72	62	92	60
TGCTATTCGTGACTTG	ref_790_upstream	62	37	93	74	50	63	52	70	55	54
TTTTCTCCTACCCTTA	ref_790_upstream	134	104	168	162	95	130	109	124	119	102
CACCCCAATCGTTCCT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGCCTGGTACACTGAG	ref_4450_missing	8	15	11	13	29	20	17	14	24	14
TATTGGGTGTGCAACC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TCTATACACCTTCGTT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTTGAACGGTGAAGCA	ref_4450_missing	17	25	32	13	22	17	16	16	28	20
TCACTACTTATACCAG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTTCGCTGTCTCTGTG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ATGTACCTGGCGAGTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CACTCGTCCGAAATCT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTGAGCCCTGATCTGA	ref_4450_missing	30	41	34	19	42	22	41	27	27	21
TAGCTCCCGTGTAAAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGGACTTAGACGGTAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTCCCGGACAGTGAAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CTAGGCTAGCCCGGTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AGAGTCGGGAATCCTG	ref_4450_missing	18	26	20	16	22	21	16	16	36	12
GTCGCGATCGAACCTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTAGAGATTTCGTTAG	ref_4450_missing	6	23	10	3	24	7	12	11	23	10
AATTTACATTGAGAAT	ref_4450_missing	17	27	21	27	26	16	35	19	34	32
TGCTCGTACTTTGTGA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCATTTTGGGCATAGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACCTGGTAGGGTCTTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACCCTTAAACACCAGT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GCCTCAGTGACTTGCG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TATCGATCAGAATCTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GGTCATCATATTCTCA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCACTTATTCGCGGAA	ref_4450_missing	18	29	27	15	30	17	27	14	37	11
CTAGTTATTGTTATGT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TATTACAACGCATTCG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CATTCTGCTCCATGAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AATACCAATTTCTTCC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTTTGATCCGCCATCC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCCCATATCAAGCGAA	ref_4450_missing	7	3	2	1	4	3	0	0	1	0
GGTACCCTATTGACAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGTGCACTATTCTATG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GCACAGGTTATTTTTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTTATATGTATCATTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACCGTTTACTCCGATC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AGTCCTTAAAAAATTT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CAATGTTTGTATACAG	ref_4450_missing	7	15	8	4	18	8	15	5	4	3
CACACCTTCCTGTTAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGACATGCTGCATAGA	ref_4450_missing	1	1	0	0	0	0	0	0	0	1
TGTAACAGGATGCGTG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GGAACCGCCATGTCGC	ref_4450_missing	17	17	17	15	17	11	17	16	25	6
TTGTTCCCGAGTTCCG	ref_4450_missing	7	17	16	9	14	5	17	6	21	4
GAAGGTCGCAACATCC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGACAGAGCCAGACCT	ref_4450_missing	30	42	44	18	60	23	41	28	50	19
TCACCCCCATGTGATG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGCACTCGAGGTACCG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGCCAGGTGATTGGCG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GGACGGTTGCACCTCT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CAATGCATTGTTATTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGATAAGGGTTACCCG	ref_4450_missing	19	23	26	17	34	15	27	22	41	13
TCGAGTTATCCTGTGT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACTGCTACTTTTAATT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AAAAGTTTCGGGGACT	ref_4450_missing	14	16	11	13	22	13	11	13	16	6
TTTTAATTGTAACTGA	ref_4450_missing	5	8	11	9	8	5	12	1	13	3
GGGTGGTTCGCAGCCT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTAGGGAGAACAGCGG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ATGCCACCAGGGCCCA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CGCGTCTAGAAGTGTG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ATTCGTATGTATAGGG	ref_4450_missing	2	6	3	0	4	2	8	1	3	0
AACACGAATTCCTTTG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCGCAATCATACTTTC	ref_4450_missing	13	17	13	9	16	4	16	7	20	6
ACAATCGCTTTAAAGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AATTTTCGATGCTCCG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CACCAAAGAGTCTTTG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTAGACGGTGCTTGGA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CATAACTTGCATTTCT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AAAATATTCCTCTAAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTACGACACTGGAGTT	ref_4450_missing	5	8	6	9	5	4	13	6	9	2
CGTCATATATATATTG	ref_4450_missing	25	39	30	29	37	26	49	19	35	21
CCGTTCCTCGTTCTAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AGCTCTTTCACTGCGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ATCCGATCCAGATCTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACAAATATGCCAGGAA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AGACGTAATCAAGTAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TATTGATCTGCATAGA	ref_4450_missing	9	24	10	14	10	4	14	18	9	7
AGCACTTTGACGGCAG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTACACTCCGTAACGA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AAAATACTGTTATTGT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCTTTATTCATT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AGGGAATTTACAATAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CTTGATATTCGCCCCA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTATTTTGGGGGTAGG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCAACCTTTGGTTGGT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GATCGGGGTTCTTTTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTAATCTCCCCGTCCC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TTGTATTACCCATCAG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CACGCTCCTGTAGTCT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GGCCTGGAGTGATATT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GCCTTCCGCGGAATAG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TCGTCAGTGGAAGATA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTTCAACGAGTGAATC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTTCACCCTGTGCCGA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GCGCTCGTTTAAGGCA	ref_4450_missing	3	12	11	2	8	7	14	6	11	5
TGTCGGTATACGCCTG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CTCACACAAATAGCGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTTATAAGTACCGTGT	ref_4450_missing	8	20	17	16	20	10	24	22	16	11
ACGTTGCAAGTCTAAA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GCGCCAAGTATCACAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTCTGACTTTGGGCAC	ref_4450_missing	8	20	20	9	26	16	23	8	26	13
ATGCGCTTTGTGAAGA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GGTGTATATAGGTTAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACTGCCCTTTAGTCGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCTGGTTTTTGATGAT	ref_4450_missing	0	3	2	3	7	0	7	1	6	1
AAGGTGTTGCAGATTT	ref_4450_missing	19	28	15	9	24	17	21	13	30	15
GATGGAAAATGGATCG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CTAGTGGGAGTGAACG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CGCTTTTCCACCTCCC	ref_4450_missing	4	14	5	2	11	2	14	2	14	6
AGCCTCGAAATCACGT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CGTAGACTATCCAATC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTTCAACGAGTTTAAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCCCTTTTTTGTCCGG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CAATGTCTTCCTTTTT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CCGGCCGGTTTTTGTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GATGACCGCCGGATGA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACGTTGCGGTCAATTT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTTGAACGGGCC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CTCTTGCGCCCATTAA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TCGCCTCCATTCCTGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AGCTCCCGTTAGCGTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GGGGGTGGACGTACCC	ref_4450_missing	17	16	13	15	20	11	29	10	15	12
TTGACTTTCCAAGTGT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTACATGTCGATTACC	ref_4450_missing	3	18	4	4	20	6	11	6	12	3
GGCACTTAACATGCCT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AAAGCTACAATGATTG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGAGCCGTATAACTTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GGCCTATAGGATACCT	ref_4450_missing	3	3	2	4	3	5	4	1	4	1
GAGCGCTCATTCGCCA	ref_4450_missing	7	16	15	8	6	14	12	6	15	7
TGACAGAGATCGTTTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CGATCTGGTCTGTGTC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CACCGGCTATACCCAA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
GTATCTTCCACCGCGC	ref_4450_missing	3	4	3	1	1	0	3	3	1	1
GCTTTTCGCATAGGGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
AATCTTTCCTCCGCGC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ATGTAATTCTCGGGAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
CGTGACGATCGCCGTT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ATAGCGATACTCCTTA	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TGCACGGTCAACTCCC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TCTGTTCAGAGCAGAT	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ATAAAGGAGTCTACAC	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TACAAACTAAATGATA	ref_4450_missing	2	0	1	0	1	1	3	2	0	0
TCTTTATTTTTAAGCA	ref_4450_missing	4	6	7	5	4	8	4	5	5	5
TAGTGATCATACTGCT	ref_4450_missing	17	14	18	6	13	11	16	1	11	7
AGAGTGCCCGGATAAC	ref_4450_missing	3	9	4	5	3	4	4	8	5	4
TGCACTACGACTGCGC	ref_4450_missing	2	4	1	0	4	0	1	1	4	0
TAGGTTTCGACATGGG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
TCTTTCTGATTGCCAG	ref_4450_missing	0	0	0	0	0	0	0	0	0	0
ACTCTAGCTAGAAGGC	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
GGTAGGGGCGCTTTGA	alt_4487_missing	25	25	31	13	21	28	27	15	39	12
GGTGGTGGTGTCTCAC	alt_4487_missing	17	25	24	16	34	17	26	13	23	18
GCCTCCCTCCTGTAAC	alt_4487_missing	34	40	43	36	64	39	82	34	71	34
AGAAGCGGGAAATACG	alt_4487_missing	48	78	52	48	62	57	95	44	75	35
CTTTCTGTTGAAAGCG	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
ATATTCATCCTCTTAA	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
AAAGGCTTTCTAGCGC	alt_4487_missing	3	9	8	9	16	4	8	5	6	5
TCAAGTACTCGATTTA	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
TCCGCCTTACGCGCCC	alt_4487_missing	1	5	4	3	11	3	3	1	7	2
ATGCGTATTGAGGCGG	alt_4487_missing	13	43	30	19	40	24	38	28	30	18
GTACGCCATGCTGCTT	alt_4487_missing	15	23	25	22	33	37	28	21	29	19
CTCTACGCCGGGGCCC	alt_4487_missing	14	28	18	28	32	22	21	23	43	21
TCTTCTCTGTTTTTCG	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
TAGCTTTACCAGGCTT	alt_4487_missing	10	20	19	16	13	14	16	9	23	18
CAAAGATAAAGCGCAT	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
CCTATGTCTAGTAGGT	alt_4487_missing	24	41	24	28	44	24	63	29	56	25
CTATCCCGTCGAGCGG	alt_4487_missing	1	21	2	2	22	0	24	1	19	1
TTCGTTTAATTGTCCT	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
TATCAAAACAAAGCTG	alt_4487_missing	53	44	87	72	25	74	28	59	37	73
ATAGCACCTTATTGCT	alt_4487_missing	27	44	41	30	40	34	46	32	49	25
GCAATTCTACAACCCA	alt_4487_missing	19	15	23	15	29	16	19	10	17	19
ACGGCCTATTCTATCT	alt_4487_missing	4	6	5	3	11	3	12	1	12	8
ACACAGGCCCTTTTGT	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
TACCAGGTTGGTTGAC	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
CCACGTGGTCATTATC	alt_4487_missing	51	55	46	40	76	42	60	32	59	34
TATTGCGAGCCTCCGG	alt_4487_missing	0	0	0	0	0	0	0	0	0	0
GTAGATAGGTACTATC	alt_4487_missing	12	27	9	17	30	15	17	10	32	13
AAAATCCTATAGAATG	alt_3933_RC	25	31	26	18	34	32	41	27	34	14
CGGATCAGCGCGGTAG	alt_3933_RC	6	3	5	4	8	1	1	3	3	5
ACCAGTCGCATACATG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TAAGTCTTTTCACTGT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TTCGTCCACGCACGCA	alt_3933_RC	25	34	28	31	41	25	39	32	37	30
ATACGGCACAACGATG	alt_3933_RC	1	13	6	6	9	7	9	5	6	5
ATTGTATCCTCAGTAT	alt_3933_RC	17	25	15	13	22	13	21	18	18	12
GAGGGCCGCTCTTGCA	alt_3933_RC	31	54	52	31	72	46	60	34	45	33
AGATATCGAGGGGTAA	alt_3933_RC	10	20	30	16	10	12	19	17	10	8
TTGTGGCCACTCGGTC	alt_3933_RC	3	1	0	3	1	2	2	2	5	2
CATCAGCTTTAATCAG	alt_3933_RC	10	10	14	8	25	7	16	6	13	4
AGTGATGTGGCCCGTC	alt_3933_RC	39	42	48	32	65	44	49	45	59	34
TCCAATGCCCTGACGT	alt_3933_RC	5	7	5	8	7	0	2	4	3	4
ACGGCATCTTTGTTTG	alt_3933_RC	42	33	47	32	31	32	37	31	36	29
CCGTATGATACACAGT	alt_3933_RC	17	45	34	18	33	32	37	24	28	24
GTTTGACGCGGTCGTA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
ATTCTACTTATGTTGT	alt_3933_RC	17	13	12	6	17	6	12	8	17	8
TTCCGGAGCACTGAAT	alt_3933_RC	3	10	8	11	14	5	17	6	10	12
CTATCCAAATGCCGGA	alt_3933_RC	7	8	8	8	7	6	18	4	16	4
ACCGTGTAGTCCCTTC	alt_3933_RC	18	57	38	36	45	28	54	36	50	23
GCACTTGACGTGTTTA	alt_3933_RC	6	6	14	6	11	6	16	10	8	12
GTTTCAGGCCTCCCTC	alt_3933_RC	6	6	8	5	6	3	8	1	7	5
TGTGGGCAAGATTTTA	alt_3933_RC	11	16	10	10	9	13	17	7	3	9
GCTAAGCCTTACCTTT	alt_3933_RC	4	42	7	3	38	7	25	4	37	2
TACCTTTGTTGGGATT	alt_3933_RC	0	0	0	0	0	0	0	1	0	0
CTGTTACACGTTTTAT	alt_3933_RC	21	24	9	19	28	19	26	20	37	18
CTCACATTTGATCTTA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
GCTGCCTAACTATGTC	alt_3933_RC	18	24	20	14	22	16	16	16	18	9
TTTCTTCCTCAGGAAC	alt_3933_RC	7	17	12	17	12	8	19	14	16	7
TATAAGCCCGCGTCCC	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CCTTATATTCTTAAAT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TGGGTTTAGCGTCCGG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
ACCCTCCACCTGTGTT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TAAGCGCCTCTCCTCA	alt_3933_RC	37	45	34	33	55	28	55	27	33	23
AAATTTCGCATGGAAA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CCTTACAGATTTGGTA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
AGCGCAGTTTACTACA	alt_3933_RC	10	7	9	8	20	6	31	13	18	8
TTATGACGCCATTCAT	alt_3933_RC	142	158	158	158	175	130	123	125	138	107
TCTTCTTCCTCTTCAT	alt_3933_RC	114	138	154	134	146	113	120	106	173	123
TATTATCCGCATTACC	alt_3933_RC	44	41	29	38	43	33	46	31	37	29
ACGTTCTCGGGGCTCA	alt_3933_RC	106	105	82	92	123	93	109	61	123	79
ACCGGCCCATGCGCCT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TATGGCGGCGTCTAGA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
AATTTTCTTTTTTTAG	alt_3933_RC	54	55	53	41	55	54	61	31	48	44
CCCTGTGCTATTGTAA	alt_3933_RC	15	36	27	22	22	10	33	8	36	12
TGGATGCTCTCATTAG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
ATTCTTCCATCCTACC	alt_3933_RC	33	49	51	38	47	32	54	23	52	24
AAACTTTAGTTTTCTA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CTAAAACTACGAAATT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TTTGGACTACTCTCAG	alt_3933_RC	10	20	14	19	16	15	24	10	16	15
GTCCTAACAGTTACAT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TTCCCGTCAAAGTATG	alt_3933_RC	77	115	89	101	145	68	160	88	174	84
GTTTGTCACGAACCGT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
AGATCGTTAGTAAAAC	alt_3933_RC	23	29	22	28	38	22	26	22	25	21
GGCCAAGAACAAAGTT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CGTTTGCAACCCGTAG	alt_3933_RC	28	23	32	26	33	17	30	33	37	21
ACCCAACTTGTCACTT	alt_3933_RC	5	12	12	8	23	11	16	3	15	8
TTCTTTGCAGTGGCCG	alt_3933_RC	38	63	49	43	64	47	67	50	71	28
GACTGGCTTTACTAGG	alt_3933_RC	31	49	38	39	32	27	65	33	63	29
GTTTGTTCCGCTTTCA	alt_3933_RC	20	11	16	15	16	19	17	24	20	15
ATTCTATGTTACCAAG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TGGGGGGTTATTTTTT	alt_3933_RC	9	10	11	19	11	13	17	16	16	9
AATGCATATCGGAAGG	alt_3933_RC	18	34	20	28	20	23	28	13	22	18
AGATGGCCTAGTTCCG	alt_3933_RC	6	7	3	7	5	4	3	2	5	5
CCATCCACCTGACAGT	alt_3933_RC	4	24	3	2	27	2	21	0	28	0
GTTGACGTATCTTTTT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
GGTTCCTGCAGGTCAT	alt_3933_RC	6	18	7	8	9	9	20	4	7	4
GGGTTATCACTTTAGA	alt_3933_RC	14	23	12	9	12	12	20	12	18	13
GAATGCCGTAAAAGCG	alt_3933_RC	7	17	13	13	13	12	13	14	21	11
TAGGATCTTCTATCAT	alt_3933_RC	22	25	15	22	34	21	35	19	35	18
TATCATCTGCGGCTTC	alt_3933_RC	21	35	29	27	32	22	22	20	34	20
CACTCTCTTAAAGTCT	alt_3933_RC	2	17	7	1	9	6	7	4	12	4
TGATCGAATGCTGGCT	alt_3933_RC	11	17	11	7	20	14	15	10	14	18
GAGTGCTCTGTTATCT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
GTCAGTGCGCCCGTAT	alt_3933_RC	16	12	18	15	29	19	31	12	18	18
ACCGCTCCAGGGGATA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
AATTTCCTGTGGTCGG	alt_3933_RC	27	20	30	23	21	23	30	31	25	14
CGGTTGTATAATCTTC	alt_3933_RC	22	25	29	15	23	11	20	16	32	18
TTCTGGTATACTGGGG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TACGCTCTGCCCTATA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
ACGCTCGCGTCTGACG	alt_3933_RC	28	34	32	25	26	16	31	14	42	16
TAATGTGTAGACACTG	alt_3933_RC	31	62	49	44	60	31	59	31	81	37
CCCTTCGGTCGCGTTG	alt_3933_RC	12	34	22	12	39	17	29	14	44	10
GTGTGCACGTGCTCGA	alt_3933_RC	2	5	5	7	6	6	4	8	7	4
TCTTAGTCTACGCGAA	alt_3933_RC	25	35	33	26	45	26	33	16	37	26
AGCCGCACGGCCTTGG	alt_3933_RC	11	10	8	12	13	8	12	5	12	8
GTTCGTAGTTCGTTAG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TACCTTTGTTGAGATT	alt_3933_RC	104	168	116	98	207	84	220	100	219	111
GCGACATATTCCCAGG	alt_3933_RC	69	70	80	62	70	64	89	61	87	55
CACACGTTTTCTAGTT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
AAACGTCAATATTAGA	alt_3933_RC	45	43	60	49	51	32	59	21	67	40
CGTGGTCTTGTCATGC	alt_3933_RC	38	36	35	26	38	43	38	38	51	21
GACTGCTGTGTGACCC	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CTGTTGTCTGGCGGCT	alt_3933_RC	7	17	10	3	23	8	12	8	13	9
AACCCTTTCTTAGTCA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
GCTATATATTTCTTTA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CCCAAGCAGAGACCGT	alt_3933_RC	5	6	5	2	6	2	7	3	7	8
AGGGGGTCCGCTAGCT	alt_3933_RC	34	41	26	31	33	19	35	29	32	32
TTATACCTGGGATTAT	alt_3933_RC	48	59	49	41	63	55	42	41	81	44
TTTAGGTGTCCATGGT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TGAACAGCGGTCTTAT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
ATTCTATTAAGCCCGG	alt_3933_RC	27	32	27	26	23	25	33	28	45	20
TAGTTTAGGACAGTAT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CATTAACGCTTCGCGT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
GCAGGGAAAATGCGTG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CGATCTCGTGGTATCA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
ATTCCGCTAATTCTAC	alt_3933_RC	21	29	33	20	34	11	29	21	27	22
AGATGTGCGAATTAGC	alt_3933_RC	14	18	27	16	8	11	20	14	33	19
AGTAACATATCAATAT	alt_3933_RC	4	10	2	4	4	5	11	2	6	5
GAGATAGCTCGGGTCA	alt_3933_RC	16	15	25	18	13	13	18	11	18	17
ACAAATGTCTTGGTTT	alt_3933_RC	3	1	5	2	2	1	1	1	7	4
TCCTCTGTTGACTCGC	alt_3933_RC	19	29	25	25	19	15	21	19	34	18
GATCTGTTGTGGATGT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TTTCCGTGCGCATTGC	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
CGGTCTAGCTCCACCG	alt_3933_RC	10	42	16	10	39	14	32	8	25	14
CAGGCCACCTCCATGT	alt_3933_RC	1	4	2	1	13	1	8	2	4	1
CGACCGCCAGTAATTT	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TACATCAGGCCCACTA	alt_3933_RC	21	23	27	15	28	18	38	19	34	23
CCCCTCCCGAGGGCTG	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
TGTGACCTTTACACAA	alt_3933_RC	1	4	0	2	6	0	3	2	1	1
TGCTAATTCCGGTTAA	alt_3933_RC	0	0	0	0	0	0	0	0	0	0
AATGCTGAGTCCGAAC	alt_3933_RC	6	4	8	8	6	9	13	5	5	2
TCAGCCCGTCTCCTGT	alt_3933_RC	18	22	23	19	18	14	31	12	32	20
TGAGGTTCAACCAAGA	alt_3933_RC	1	0	0	0	1	0	0	0	2	0
GCAATGTCGGGTCCCC	alt_4401_missing	12	28	9	10	25	13	19	12	22	11
GTACCATATATTGGCG	alt_4401_missing	23	58	18	18	56	23	40	20	53	19
CTTACAAGCGGTTTAC	alt_4401_missing	7	6	7	3	13	4	17	6	6	3
ATTTGCCGGCTCAAGT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
ATAGCTGGTACCTCGT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
GATTGTCAGTACTCTC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TAGGAACATGTCAACG	alt_4401_missing	9	21	5	3	26	9	19	3	16	4
TTGTTATCATCCCCCC	alt_4401_missing	6	41	3	7	31	1	40	2	43	3
TGTTTCAATGAGGGCG	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
GCAAAGTAGTAACATC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
ACCTCCCGATGAACCT	alt_4401_missing	0	10	0	0	6	0	5	0	6	0
ACTTTGGGGATATCGA	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
CTCGCTTCAGCGCGTA	alt_4401_missing	43	72	45	31	90	30	80	41	73	23
GCGACCCTCGTATCGG	alt_4401_missing	9	16	9	6	28	8	26	3	20	7
AGCCCACTGCAGTTGT	alt_4401_missing	11	36	13	6	31	6	38	13	49	8
GATCGTTCCTGCCTGG	alt_4401_missing	10	15	10	9	20	11	21	4	28	6
GGTCGACGATGCATCC	alt_4401_missing	3	15	3	4	24	3	18	1	12	1
ATAAAGGATTTTCGTG	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
AACTCTCCAGCTCTCG	alt_4401_missing	7	12	10	10	18	8	23	9	28	12
TTGCTCTATTTTACCC	alt_4401_missing	3	13	4	5	7	4	8	4	16	4
CCTCCGCTTTTGCGCA	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
AACCAGGCTTTTATGG	alt_4401_missing	2	2	3	1	5	1	5	2	2	0
GCAATCATAAATTGGG	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TGAGCCTCTTAAGGTT	alt_4401_missing	8	24	8	4	17	12	28	11	27	10
CTCCATATGCGTGAGA	alt_4401_missing	5	13	4	3	16	2	6	7	14	1
TGGAGGATCTTACATG	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
CAAGAAGAGCCGTCCC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
GGCATTTCTGATTTTG	alt_4401_missing	11	19	17	6	27	7	25	7	23	4
TTCACATTACTCGTCG	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TTCATGACATTGGGGA	alt_4401_missing	0	1	5	5	4	0	2	1	3	0
CTGACAAAATTTACGC	alt_4401_missing	27	52	46	41	54	24	66	20	82	15
GTTACACCTCAGTAAA	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
GTGCCCCCGTCCGAAT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
CGGTCTGCAAAGCATA	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
GTTCCAACACCGGCGC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
ACCGCTCTTAAGCGAG	alt_4401_missing	1	4	1	4	1	2	6	4	13	2
AAGTTTAAAAACATGA	alt_4401_missing	19	34	17	20	27	11	35	23	36	18
GAGGCGCGTAGTCCAA	alt_4401_missing	4	6	3	3	5	2	8	2	5	6
TGTGTTTTCTTTCTTA	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TGGAGATCCCACCCTA	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TCCCCTGTGTGTATGA	alt_4401_missing	9	8	8	7	18	5	17	2	12	6
CCCGGTTGGGCCCCAT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TCAGACGGATCGTAGC	alt_4401_missing	0	5	0	2	2	0	1	0	1	0
CGGTTTTTTAGGCGTC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTCATAATGCAG	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
CATAAGTTCATTCCGT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
ATGAAGAATCCATTAT	alt_4401_missing	7	11	9	9	10	7	4	2	14	3
AGTAATGAGATTTTGG	alt_4401_missing	1	4	0	0	1	2	1	2	3	1
GACTATTTTGATCTAC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
ATGCTGATGATTCAAC	alt_4401_missing	10	24	18	10	21	11	22	3	26	10
CCTCATGACCCGCGAG	alt_4401_missing	1	2	1	1	8	0	6	9	5	2
AATTGCGAAATATTCT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
ACTATGAATGCCTCTC	alt_4401_missing	10	17	4	7	18	5	24	2	16	5
AGCAGTGCCCGCATAA	alt_4401_missing	9	18	8	10	12	4	13	9	14	2
GATTGGTCTGACTGAG	alt_4401_missing	0	1	0	0	0	2	5	0	5	0
TGGGTTCTGTGCTGCC	alt_4401_missing	9	14	8	8	25	10	30	4	19	8
CGGGCAACGTTCGTCA	alt_4401_missing	22	54	26	25	75	24	68	28	69	14
TTCCGTGCGTCACCTG	alt_4401_missing	8	9	6	2	13	5	12	3	15	6
TAGGGTCGTTATTTAC	alt_4401_missing	11	26	6	6	13	6	15	5	21	13
GATTCGATTCTTTTTG	alt_4401_missing	6	13	17	7	22	15	28	6	18	4
TGAAGAAATCGACACT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
CAACTTCTCTGTACTT	alt_4401_missing	8	14	6	1	13	8	13	10	11	4
AAGCGTTTGACGCCTG	alt_4401_missing	4	22	8	8	24	2	14	5	15	1
AGTATAAGATACTCGC	alt_4401_missing	15	31	27	14	37	25	58	21	57	23
ACCACCCAACACGATC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
TGAAACGTACACAAAC	alt_4401_missing	1	3	0	0	3	1	3	0	2	1
GTTATGTTGTGGGGTG	alt_4401_missing	1	3	0	1	3	0	2	1	2	0
TCATCAGTTCTTGACT	alt_4401_missing	12	23	17	10	37	8	29	10	32	14
GTAGGAGGCAAGTCAT	alt_4401_missing	5	13	5	2	5	6	8	1	10	2
CTTTGGTAAACGGTCG	alt_4401_missing	24	44	20	10	49	26	50	10	26	19
GTTTGTCGCCGATCTT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
CGACGAGCCGCGTTAT	alt_4401_missing	5	17	11	20	18	12	16	9	18	12
CTATCGTCGTTGCTCT	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
GCTGTAACTGCGTGCC	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
ATCTTGCCTGACGCAG	alt_4401_missing	0	0	0	0	0	0	0	0	0	0
CGACCCTAAGCATCGC	alt_4401_missing	3	12	9	7	9	10	9	5	20	4
TGTTAAATATGGCTAA	alt_4401_missing	5	7	2	5	8	4	6	3	3	4
GGGGTATTCCGTCCCA	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTTTTTTTTTGT	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
GTTGAAGCTTGGGAAG	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
ATATATCCTGTGTATT	ref_4803_missing	12	22	21	15	29	9	18	12	21	10
CTTTCAAGGAGGCTAC	ref_4803_missing	15	30	15	20	26	20	30	14	25	15
ATATTCGGGCTTCGAT	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TCGCAGGTCACAGTAC	ref_4803_missing	4	10	13	5	5	2	11	1	10	5
TTTGTTCCACGGGCTT	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TCGACATGGCCGATGG	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TCGGTCACTTCGCCGA	ref_4803_missing	20	29	21	9	20	11	22	5	23	9
CTTCTCCGGACGGGTT	ref_4803_missing	7	7	9	9	10	8	18	6	8	3
TTTTGTCATACAGAGG	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
CTAGGCTGAATTAGGT	ref_4803_missing	25	51	33	37	59	28	48	29	53	15
AGCTATGAAGCTCAGA	ref_4803_missing	15	38	18	16	30	17	41	23	44	20
AGAGGCCTGCCACTAT	ref_4803_missing	6	11	7	10	14	13	5	7	13	5
GAAATACTCTTAGGTT	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
CGTGGGCGATAAATGG	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
GTTTCAATTTATAGTG	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TCTGTCCTTTTTCTTT	ref_4803_missing	3	7	2	3	5	4	3	2	2	6
GCTGCGTTCAAGTTAT	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
ATTTCCAGTATCCTAA	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TTCAGAATTTATGTTA	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TGGGTGATTATCCTCG	ref_4803_missing	3	3	7	9	7	5	8	4	6	6
TTTCGACGACGTTGAC	ref_4803_missing	12	17	20	21	29	6	22	16	29	13
GATATTTCTTGGGGGA	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
ACCTCGTATCTTGTGT	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
CCCGAACCCCGAAGGA	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TTTCTATATCCCTACG	ref_4803_missing	18	35	19	9	21	13	35	10	41	11
TCAAGTTTCTATTTTT	ref_4803_missing	2	0	1	1	0	0	0	0	0	0
AGGCTTCCTCGCTTTC	ref_4803_missing	8	11	13	8	12	10	6	8	6	6
GCCCTCATAGAGCGAA	ref_4803_missing	0	5	2	0	5	3	2	0	5	0
ATGTCTTTAAGTCTAC	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
AGCCCGTCAAGTTAGT	ref_4803_missing	8	31	10	15	27	6	27	3	17	12
TTGTAGCGAGTAATGC	ref_4803_missing	7	8	6	2	8	4	8	3	7	2
GTTTGTAGGCTCTCGG	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
GTTCTGCTCACATTTT	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
GGTTCGTTTACATAGA	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
CTACTGCCTGTGTCAC	ref_4803_missing	0	0	0	0	0	0	0	0	0	0
TCCTCTTATTCTCTTA	ref_4803_missing	9	7	6	2	13	4	4	6	11	10
GGACTGATGTAGTCGT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCCTTTCAGCTATACG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
ACCGCCAGTGATTATC	ref_5492_reverse	2	1	2	0	4	2	6	2	9	4
GTTCCGAGCGAGGACC	ref_5492_reverse	6	3	2	2	1	7	11	8	4	7
CGCGTTGTTCTTACTA	ref_5492_reverse	26	26	29	25	26	29	23	20	23	25
CTATCCACGCAGTTAC	ref_5492_reverse	17	9	15	17	12	9	7	12	17	22
TTGCTGCCATCATATT	ref_5492_reverse	13	9	12	15	11	16	10	17	18	11
GTGACAAGTGCATTCG	ref_5492_reverse	1	1	9	0	2	9	3	1	5	4
TACGTTCTTACCGCGC	ref_5492_reverse	6	5	7	2	6	3	5	2	8	6
CAGGTATTATTTCATC	ref_5492_reverse	45	64	63	61	43	47	48	49	50	55
AACAACAGCTTTTACA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TGTTGTTCTTGCGCGA	ref_5492_reverse	12	11	10	11	11	13	11	11	9	10
TAATATGGACTGACCA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CACTTCTTTTTCTTGA	ref_5492_reverse	49	52	54	50	56	50	43	49	51	51
GAGTTTTGGTTACCCT	ref_5492_reverse	5	11	7	7	17	10	14	11	11	12
GAGGGAGCGCTCTTAT	ref_5492_reverse	0	3	2	3	1	1	0	1	0	1
TTGCATCATGTCTTGG	ref_5492_reverse	9	15	16	18	19	8	10	8	8	11
TGCCAGAATAGGGGAA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GACTCCGTAACAGGCG	ref_5492_reverse	212	211	238	213	220	234	234	212	244	195
ACGCTACTTGGAGTAT	ref_5492_reverse	58	65	79	63	90	55	85	66	94	76
GCTAGGTGATGCGTGC	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GTCATAGGGGGGCGCA	ref_5492_reverse	50	23	44	20	36	29	46	38	42	39
TTAGTGAAAAGGTGTA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GATACAAGACAAACTT	ref_5492_reverse	20	35	46	36	38	21	39	32	27	29
CGTCTAGGTCATGCGA	ref_5492_reverse	24	35	27	23	39	40	23	39	30	15
CTCCATCTAAGAAACC	ref_5492_reverse	52	65	76	57	84	55	73	56	77	53
GTGGTAACCTACGCGA	ref_5492_reverse	6	12	11	5	9	10	9	7	6	15
ATTAGAACGCATCGAC	ref_5492_reverse	51	66	76	79	60	59	65	57	82	58
AGTAGCCGCCATCTGT	ref_5492_reverse	53	40	62	70	43	55	53	45	49	46
GCGCTTCAGCCGTACA	ref_5492_reverse	81	118	106	85	91	103	106	85	107	73
TGGTCATGATACTGCT	ref_5492_reverse	15	20	20	23	25	18	26	13	28	19
ACATGTATTCAGACGT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GAGTCAGCCCCAGAGT	ref_5492_reverse	14	11	5	7	10	5	10	13	11	4
TTTAACCGGTGATATT	ref_5492_reverse	5	10	5	6	21	6	6	3	9	3
CATTGCACACCGCCAG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
AATATCCGTCTCGAGC	ref_5492_reverse	3	6	6	3	10	5	6	7	4	4
CTGGTTGACCTCTTGC	ref_5492_reverse	39	43	43	36	46	24	52	35	54	39
GGAGCTCGATGGCCAG	ref_5492_reverse	17	22	23	21	16	25	18	22	21	20
ACCTGGATCTTGTTGT	ref_5492_reverse	35	43	48	40	61	29	46	44	48	24
CTTCGGAGTTGCGTAG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TGAAGTTCGGTCAACG	ref_5492_reverse	9	7	8	8	7	2	2	1	14	1
GTGTCGCTCAGGTTAA	ref_5492_reverse	31	42	50	22	50	26	36	32	38	41
ATGCATCTTAAAGACT	ref_5492_reverse	56	57	66	43	75	62	68	51	57	57
CGGGTGTGTTTGAAGA	ref_5492_reverse	9	5	12	9	4	14	8	5	7	5
TTTGATTTAGTGTAAT	ref_5492_reverse	26	24	20	14	29	20	19	28	28	10
TCAAGTCCTAGGCTCA	ref_5492_reverse	21	21	24	33	15	33	31	18	26	21
CGACTCGGTGAGTTTG	ref_5492_reverse	31	30	41	34	38	29	41	32	35	24
TCTGTACGTATGATCT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGTGTTGTCCAAA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GCCATATCGTTGTCCT	ref_5492_reverse	6	5	5	1	7	7	11	4	4	4
GCCGGTCGTTGGAACT	ref_5492_reverse	21	42	7	14	39	28	34	11	26	16
GAACGTAGTCGCGGCT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCATAGTTCCGAT	ref_5492_reverse	15	21	21	10	20	15	15	15	14	7
TGGTACTCCTCCACCA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGTTGTAGCAGAAAAC	ref_5492_reverse	15	13	28	18	9	15	14	19	8	22
TCCTTCATATGGGGAC	ref_5492_reverse	24	29	35	31	29	24	30	17	20	22
GTACTGTTGGAGGCTC	ref_5492_reverse	69	46	66	53	57	67	47	60	47	49
TTTGTCTTCCTATGCC	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
AGTTGGATTGCAGCCA	ref_5492_reverse	82	82	125	82	77	71	78	74	76	64
GGGTATCATGCGCATA	ref_5492_reverse	7	2	10	3	11	7	6	3	9	3
AAACTGTTAAGCCACG	ref_5492_reverse	10	10	15	11	10	18	13	12	9	16
GCGAATCTCAGGATGT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CCATACACTTTACCGG	ref_5492_reverse	8	12	13	8	12	8	10	10	19	9
CATGTGCTCCATCCCC	ref_5492_reverse	19	38	25	26	28	25	36	18	46	18
GATGGTATGTACAACT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CATTGTCTTTCCCAAA	ref_5492_reverse	20	26	15	17	12	10	24	6	12	13
CTTTCCGAATAATTGA	ref_5492_reverse	237	211	269	235	219	206	235	232	235	205
TTGTCTGGTCTCCACC	ref_5492_reverse	27	28	18	21	29	18	28	23	29	25
CTTAGACCTGCATTTC	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
ACAGTGATTGTCTATA	ref_5492_reverse	35	42	47	35	78	28	36	24	44	45
GTCATCTGCACATACT	ref_5492_reverse	19	23	34	26	25	38	24	21	15	25
TGGTCACTTGTTGTGT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CTGTCTATGATTATCT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
AATTTTAATGCTCGCA	ref_5492_reverse	4	0	3	2	1	1	0	5	1	2
TCTTCTACCGGGTGCC	ref_5492_reverse	2	2	5	4	4	1	6	2	2	1
CGACCCACTTATCCTA	ref_5492_reverse	7	3	8	5	5	4	7	7	9	12
CTTAGACCTGCATTGA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GTTCATTCCTTGGTTT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCCCTACTGCGCTAAA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CGTTTTGGGGCAAACT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGTACAGCCCATTCGC	ref_5492_reverse	15	38	19	14	46	27	54	3	58	11
CATATAGCAAAACGGT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TATAAGATTGAAGATC	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CGAAAAAGTCCATTTG	ref_5492_reverse	8	20	13	17	20	14	9	15	19	8
GTGTGGGATGAGCCTT	ref_5492_reverse	41	33	35	34	26	28	27	20	26	29
CGTCATCGGTCGGATT	ref_5492_reverse	6	8	6	3	10	8	2	12	8	5
GGATTCTAGAGTTGTG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTCCATCACAGGG	ref_5492_reverse	40	41	46	49	46	42	30	46	50	49
TTCCCTGTTCCATCTA	ref_5492_reverse	1	4	0	2	2	1	2	6	3	2
GAATAAGGTTCACACG	ref_5492_reverse	43	27	29	32	20	30	20	22	25	31
CCCCTCACCGGCAGGT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGGAGTCAATGCC	ref_5492_reverse	4	5	3	0	5	4	9	2	7	0
CACGATAGTTGGTTTT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TATCATTGTTGTCGTC	ref_5492_reverse	38	30	68	33	50	42	49	44	53	29
GATACGTTATTGTCGG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCCGTGTACCCCATTA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCTGACTATAGGATCA	ref_5492_reverse	23	30	34	34	25	18	18	25	21	34
ATGTGGGATGATTTGG	ref_5492_reverse	23	29	32	19	33	30	23	28	35	30
TCTCTACTACCCATTA	ref_5492_reverse	8	18	17	15	27	17	17	7	23	9
GAGATAATGTCCGCCT	ref_5492_reverse	50	21	56	49	43	67	38	40	22	43
AATGTTGTGAGATAGT	ref_5492_reverse	22	16	27	19	15	12	20	16	21	17
TGTTCATCCAGTGCCC	ref_5492_reverse	9	14	8	13	8	12	13	13	16	7
CGATGACCAGAACAGT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CCCCCTAACGCTGAAC	ref_5492_reverse	45	54	67	61	64	64	54	55	73	56
CCTGGTGAGGGTTGTC	ref_5492_reverse	23	21	23	14	18	10	25	13	25	13
CAATCGTCTCGGGTAC	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CATGTAGAAATTAACT	ref_5492_reverse	65	77	79	91	93	80	98	82	122	71
TTAGTGTGATCTTCTG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGGCACAATAATGTCT	ref_5492_reverse	25	22	45	28	30	25	21	24	23	23
CTCCCTACTGTGTCCA	ref_5492_reverse	9	48	6	14	48	8	57	6	60	4
TGCCGTTATAGGGTCT	ref_5492_reverse	115	122	122	111	134	101	123	78	124	106
CCTATGCATTCTGTAT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GCCGGCTTAACTTCTA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CCTTAACGCGTCCTTG	ref_5492_reverse	10	14	4	9	8	10	15	12	18	12
TCGGTATGATTTCGTG	ref_5492_reverse	38	53	49	47	47	51	37	35	43	41
GTGGTATTGTAGTTAT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TATAAGGTATCAATTT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TTTATCACATATGGAT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
ACTGGCGTAAACCCAC	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGATATACTCATG	ref_5492_reverse	30	28	47	25	30	33	37	29	39	30
ACTTGTAACCACGATG	ref_5492_reverse	6	7	11	5	2	6	6	2	2	6
GGTGAGCTTCAACGTG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GGCTCATTGGGAAGCT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CTGGCCCTAGGTGCCA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
ACATGAAGACAAACGC	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
AATGCACGCGGCTTAG	ref_5492_reverse	76	69	92	82	61	76	88	72	99	69
TTTGATGCATGCTAAC	ref_5492_reverse	10	18	13	10	6	10	12	13	12	10
ATCGTTCGAGCGGCCG	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GTCCTTATCATCGACA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
GATGTAAGCTGCGGAA	ref_5492_reverse	9	7	5	6	4	1	6	6	4	6
GTGCGTGGGGCACTAT	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
TCACACGCGGATAGCG	ref_5492_reverse	13	9	11	14	7	13	12	11	11	6
CGAATCTGCAATTGCT	ref_5492_reverse	12	17	19	17	26	24	25	11	20	14
GTAGTGTTATATTATC	ref_5492_reverse	23	31	26	7	25	16	22	26	29	12
CCGCAATAGGGATTTA	ref_5492_reverse	0	0	0	0	0	0	0	0	0	0
CAACCTGCTTCGCTTA	ref_5492_reverse	59	48	62	62	68	58	52	41	68	48
CTGATATCCCTCTCTT	ref_5492_reverse	33	19	40	25	23	19	23	11	25	15
CTGCACAGGGCCAAGT	ref_5492_reverse	22	21	23	19	24	23	15	18	20	20
ACATTGGTCACTTCTT	ref_5492_reverse	49	50	55	46	54	47	60	62	50	30
TCAATATCTCGTTCTG	alt_4879_missing	1	9	0	0	0	3	4	0	2	3
CCCACCACATGATACC	alt_4879_missing	3	14	8	11	20	6	20	10	32	4
CGAATGCTCTATTTGT	alt_4879_missing	20	18	19	22	25	18	27	19	29	13
AAAGTTCAATACGCTC	alt_4879_missing	46	60	44	28	64	26	91	27	61	29
GGTCGCGGCTCAGGTG	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
CTGTCGCTGTATAGTC	alt_4879_missing	2	12	8	8	17	3	13	10	19	4
TTTCTTGTTGCGTGCC	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
GCTTTGTTATGGGACC	alt_4879_missing	6	8	7	6	4	4	5	1	13	3
ATCACGCCGCCTCCGT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
CCCATAAATTTGCTCC	alt_4879_missing	6	10	6	5	2	3	3	6	7	3
TTTTTTGGCGAATTGT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
TGTATGAATCTCGGGT	alt_4879_missing	23	60	37	31	56	32	74	25	58	30
TGCGTTTCAATAGTCT	alt_4879_missing	5	4	8	4	5	4	7	3	5	5
TGCTTACTATGCGTCC	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
ATTTGGTGGGCTAATT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
GCTAGTTAGTTGCCCA	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
CGGCTTTGTAAATGTT	alt_4879_missing	15	15	11	7	23	7	18	10	22	12
TCCCTCGGACAGATCC	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
CGTGCCTTACGCCGTA	alt_4879_missing	79	122	88	56	125	72	138	70	153	65
TGACTCTAGGCAACGG	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
CATCTTATGCTGTATA	alt_4879_missing	12	30	10	5	12	11	11	8	6	8
CTTACACCTGTCGGTC	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
ATCTCAGGTTATAACA	alt_4879_missing	4	12	4	15	13	10	28	7	18	5
CCAGCACCAGCCACAG	alt_4879_missing	8	33	14	3	36	5	44	7	44	14
TTACTGAAGTTTTTAA	alt_4879_missing	21	28	18	17	35	15	37	11	37	14
GGACAGGGGTACACAC	alt_4879_missing	2	3	0	5	4	1	3	2	4	3
CGCTAAGCAGTTCGGT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
TGGCTTCAGGACGCGG	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
GGACCCGATGTTATAT	alt_4879_missing	20	39	23	21	49	16	35	21	50	26
AATACTAGCTTTTGGC	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
ATAAGCGTGAGCGAAA	alt_4879_missing	1	0	0	0	0	1	1	0	2	1
TGTTCTCCAGTTTAAG	alt_4879_missing	7	16	10	9	20	4	21	11	26	14
TGTTCACGTCGATTGT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
ACCTATTATGTGCGTA	alt_4879_missing	9	28	10	6	23	7	22	3	27	9
ACTTCGATGGCTTCCA	alt_4879_missing	64	110	61	52	113	56	116	71	114	60
AGTTTTAACCTAAGCT	alt_4879_missing	1	6	3	0	3	3	11	3	7	3
AAATAAAAGATTCGTT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
GTCGGGACTCGTCCTC	alt_4879_missing	34	64	24	31	67	29	65	34	60	31
AACGTCCTCAAGCTCC	alt_4879_missing	12	44	20	10	40	16	39	19	37	14
ATATCAGTTCCGCGAA	alt_4879_missing	3	6	1	1	7	2	5	2	5	3
TATAGTAATTTACCGG	alt_4879_missing	6	12	13	2	19	13	7	5	11	7
CATCGACCCTGATGCG	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
CGCGCGTTCAGTGTCT	alt_4879_missing	34	65	39	32	57	40	81	36	53	33
TATCCCATGCATCTTT	alt_4879_missing	5	18	10	2	16	6	16	5	5	3
GCTGTCTGTTTGTCGT	alt_4879_missing	22	74	36	33	58	19	69	26	62	23
GGGATCGCTCTATCTT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
AAGCCAATGCGAAGAT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
TTTGTGCTAATCCTCG	alt_4879_missing	4	29	13	14	16	5	17	9	20	9
GCTGCCCTTTGGCTTC	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
ACAGGTCGTCTAAAGA	alt_4879_missing	15	46	21	12	37	15	47	6	44	14
CGAGATTTCATTGCAC	alt_4879_missing	30	25	21	11	19	7	37	13	18	10
GAGACACACGTTCTTT	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
GGGGGTTTGCAGATCC	alt_4879_missing	5	13	9	9	20	11	21	6	16	8
CTAACTGCTTTCGGTG	alt_4879_missing	0	0	0	0	0	0	0	0	0	0
ATACTATGCATTTTCG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GTTTTCACTTTGCGTG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GGCTCATTAGAGTTTG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
TTATAGGAATGCGCAC	ref_418_missing	0	0	0	0	0	0	0	0	0	0
TGCCGTTGGTGACCTA	ref_418_missing	0	1	0	0	0	0	0	0	0	1
GTGCGAATTCTATTAT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GCACGTTAGGGATTGC	ref_418_missing	0	0	0	0	0	0	0	0	0	0
CAGTACGGAGGCTGTC	ref_418_missing	8	9	14	7	11	4	11	6	11	9
TGTAGCAGGCTAACTA	ref_418_missing	0	0	0	0	0	0	0	0	0	0
CTATCACGGCTAGCAG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
ATCTGAAGGCCTAACC	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GTCTCATCCCAGAGGG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
TTGCTCTCTTCATAAT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GACAGTGTCCGTCTGT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
TAAGTGCGGCCTTTCG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
ACACAAGAATTCTTCT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
TTTGAATGTGAGTGTT	ref_418_missing	0	3	0	2	2	0	1	1	2	1
CACGGTTCAGTCTGGC	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GGGTTGTTCGTGAAAA	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GCAAAGACGGCCAGTT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
AATTGGTTCTCTGTGG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
ATCCCAAACGGAGACT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
AAAGGGTTTATTTCGT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
TATGTCGTCGGGTGGG	ref_418_missing	0	0	0	0	0	0	0	0	0	0
CGGCCGTTTGTCCGAC	ref_418_missing	1	4	1	3	6	1	7	2	2	1
CTGTCCCTATTACGGC	ref_418_missing	0	0	0	0	0	0	0	0	0	0
CACCGGGTGGGTTTAT	ref_418_missing	0	0	0	0	0	0	0	0	0	0
GCTCATTAACTAACCC	ref_418_missing	0	0	0	0	0	0	0	0	0	0
TTGTTCTGACATCGTT	alt_396_fdr	127	133	129	107	155	113	156	109	152	95
GGGTAAAGGGTGGTGT	alt_396_fdr	6	14	12	11	10	5	8	9	15	7
GTCAGTTTATCTTTAG	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
CTCAATGTGTCGGCTT	alt_396_fdr	23	27	23	34	29	34	27	18	25	30
GGTCTTATCGGTCGTG	alt_396_fdr	19	21	22	17	21	22	19	13	21	14
CTGGCTATGATGGGTC	alt_396_fdr	49	52	60	50	63	34	63	39	58	48
TGATTGTTTGTATAGG	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGAAAGGTCCTAG	alt_396_fdr	22	22	21	33	34	18	24	17	29	28
AAGTCATGCGACCTCA	alt_396_fdr	45	40	47	30	33	38	32	28	40	29
AGACTGGAATCTTATG	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGCGCCTGGTCAT	alt_396_fdr	8	7	8	18	15	12	16	11	14	12
AGTGAAGCGTATCGCC	alt_396_fdr	3	11	1	11	8	9	6	6	9	12
CAGGGTACTCATTACA	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
GCCGGCTCGCTTTGAC	alt_396_fdr	43	112	94	69	102	65	94	76	115	59
CGGACACGTGTGCTAA	alt_396_fdr	6	7	9	10	14	6	14	5	16	6
TGAGTTGACACAAGGA	alt_396_fdr	6	8	7	9	4	8	9	5	10	5
TCCTTTTAAATAATAT	alt_396_fdr	15	22	17	16	16	15	16	13	31	16
CTTTAAAGCTGTTGTT	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
GTTTTTATCGCCTCTC	alt_396_fdr	14	9	9	13	10	10	17	2	11	7
GGTTTTCACTTTTTAC	alt_396_fdr	11	8	4	8	8	3	9	14	13	7
GTGCGATTTGTGTCCC	alt_396_fdr	26	28	20	16	31	23	41	19	29	23
GCCTTGGACGAACATG	alt_396_fdr	14	7	6	9	14	9	14	4	12	4
GATTCATAGCTGAATG	alt_396_fdr	51	46	50	42	47	48	67	38	43	33
TCAGGTGGAAGGCTCC	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
CCATGCGTCCCCGTCA	alt_396_fdr	6	22	3	7	32	9	28	8	42	8
ATTATGTGCCCGCCTC	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
CCCGTTGGCTACCACA	alt_396_fdr	40	54	51	31	43	36	46	28	47	34
ATCGTTCCGACGTCCT	alt_396_fdr	13	12	24	16	25	19	25	17	26	16
ATACTCAGATCACCTG	alt_396_fdr	40	70	64	44	64	54	65	47	87	34
ATGTCTGGCTCCCCGG	alt_396_fdr	27	49	28	23	84	38	62	27	57	16
AAAAATTCGCGTTCTT	alt_396_fdr	38	53	55	38	45	28	45	31	72	36
TTCCTTTGATCGGTGC	alt_396_fdr	0	0	0	0	0	0	0	0	0	0
TCCATCTCCGGACCGA	alt_5357_missing	22	33	46	29	41	23	32	36	35	32
CCTGTTTGCACGTTGC	alt_5357_missing	12	12	22	16	10	11	14	19	16	13
GTACCCTCCTGGAACT	alt_5357_missing	7	35	10	11	30	11	19	9	28	2
TAACATCATAGGGAAT	alt_5357_missing	25	22	27	20	23	16	32	23	22	15
TCCCACTGTAGAATCG	alt_5357_missing	17	23	17	18	35	12	23	9	26	15
CTGTTCTACTGGCAAG	alt_5357_missing	58	47	45	64	38	45	48	42	44	37
GCGGAAGTTCTCCAGA	alt_5357_missing	21	28	30	27	21	36	39	23	32	25
ATCTATTCTTGCATTA	alt_5357_missing	79	82	75	67	92	69	78	84	77	57
CCTCTGTAGGTCGGTT	alt_5825_new	0	0	0	0	0	0	0	0	0	0
TGTCATGGGGCTTTAT	alt_5825_new	18	33	23	20	28	11	31	19	34	29
TGGTTATTCCTTTGCT	alt_5825_new	0	0	0	0	0	0	0	0	0	0
TGGATGGCCCTTCAAC	alt_5825_new	3	7	8	6	8	3	6	8	22	2
GTGGCGGTCTAGCGGC	alt_5825_new	0	7	1	2	3	4	2	1	0	4
GGTTTATTATTCCCCA	alt_5825_new	12	9	9	5	18	4	20	3	12	3
CCCCAATACTATATTA	alt_5825_new	46	89	62	45	106	52	116	45	121	34
GGCAATGTAGTCTGTA	alt_5825_new	22	36	23	16	30	27	28	13	31	19
ACTTTAATCGTTTTCT	alt_5825_new	0	0	1	0	0	0	0	0	0	0
GTGTGCCGTTGGTGTG	alt_5825_new	5	20	8	12	19	13	12	9	16	1
CTTGAGGGGGATCGCC	alt_5825_new	0	0	0	0	0	0	0	0	0	0
ATTTATGGCTATGCAG	alt_5825_new	0	0	0	0	0	0	0	0	0	0
CGTCGGCCCCTTTACA	alt_5825_new	36	86	46	42	89	31	120	42	109	39
TCACCTCGGTTCACTT	alt_5825_new	45	89	49	38	87	48	105	55	103	42
TCACGTTTACCGTTCG	alt_5825_new	34	47	32	18	50	35	44	26	47	32
CGACAGACGCTAGTAT	alt_5825_new	0	0	0	0	0	0	0	0	0	0
GGTGTGTCCCCAAACG	alt_5825_new	7	14	7	5	12	2	13	5	12	6
TCTTTAATCGTTTTCT	alt_5825_new	245	442	257	227	446	222	504	220	431	211
GTTCTAGGGTTGCGCC	alt_5825_new	35	57	26	22	65	32	53	21	62	19
CTCGAATCTTCACCTG	alt_5825_new	41	99	47	49	82	42	80	39	94	33
ATACTACATCGACCTT	alt_5825_new	3	20	1	3	12	5	6	5	15	5
CCACTGTAGGTCGGTT	alt_5825_new	101	466	152	118	459	116	465	102	452	78
TTCATACATATGTAAT	alt_5825_new	20	52	23	27	28	19	57	19	45	20
GCCCTGCTAACGTTAG	alt_5825_new	0	0	0	0	0	0	0	0	0	0
TAAACCTGCGTCGGGA	alt_5825_new	16	37	17	19	24	18	27	23	37	4
ATATCCTCTGATTGCC	alt_5825_new	16	26	12	18	30	14	28	16	32	22
TTTGCATTCCGTTTAA	alt_5825_new	38	43	37	25	45	24	51	32	50	21
GGGCGGGTAACTTATG	alt_5825_new	0	0	0	0	0	0	0	0	0	0
CCAACATATCAGGCCT	alt_5825_new	42	82	43	41	71	36	58	36	89	48
GTTACAAGCGCGCTGG	alt_5825_new	39	89	63	44	69	64	96	44	108	60
CACTGATAGTCCGTCA	alt_5825_new	21	28	33	26	51	17	39	17	33	18
CGTACCTATCGTCCTT	alt_5825_new	11	48	10	18	33	12	41	13	41	11
TGTCACTTCAATCTAC	alt_5825_new	6	4	5	7	7	2	10	3	11	6
TTCCTGATAATATGTT	alt_5825_new	13	24	16	11	30	19	34	18	26	14
CGCAAACCACTTGTAA	alt_5825_new	7	14	9	3	24	6	14	3	30	8
TACCTATACTCATTAT	alt_5825_new	9	34	17	7	47	14	35	13	32	9
GTCATCCCCTGGTGGC	alt_5825_new	3	6	3	0	8	1	8	2	8	1
ATTTTGTCCATGTCCC	alt_5825_new	20	24	23	12	33	15	19	12	27	5
CAACTGTTTCAATTAT	alt_5825_new	0	0	0	0	0	0	0	0	0	0
CCTTCCTGTCACAGAC	alt_5825_new	4	11	8	5	9	6	7	5	12	8
ACATGTCCTGGCCAAA	alt_5825_new	0	0	0	0	0	0	0	0	0	0
GGGTTCATATGTGCCG	alt_5825_new	19	48	21	18	51	17	53	18	56	14
CTTTTACGTTTGTCAA	alt_5825_new	21	56	35	36	49	36	57	34	61	27
CGTCTCGCGAGGCTAC	alt_5825_new	9	19	29	19	23	18	30	15	36	14
ATTCCTTTTTCTTTTG	alt_5825_new	0	0	0	0	0	0	0	0	0	0
TCGCGTCCCGGGCGTG	alt_5825_new	5	15	5	6	6	6	12	2	7	3
GAAGTGAATATCGCCT	alt_5825_new	56	78	70	63	92	56	78	44	105	41
GTGAATTGTTGCTCAC	alt_5825_new	32	56	26	27	46	20	62	22	61	22
TTTAGCGGTTAGTCAC	alt_5825_new	14	22	11	14	20	16	23	11	24	10
TATCGGCATCAGTTTA	alt_5825_new	33	40	18	18	37	19	37	21	45	21
GTCTCAGTCCCTTAGA	alt_5825_new	0	0	0	0	0	0	0	0	0	0
GAACACTTGAATCCAA	alt_5825_new	21	27	21	14	21	14	38	18	26	12
TCTATTCTTTGGAATT	alt_5825_new	23	43	39	14	44	27	28	17	47	16
TGCATACGTAGTGGTC	alt_5825_new	12	37	14	17	31	9	44	14	34	14
TCCCGCTCTTCTTTAC	ref_1903_reverse	0	0	0	0	0	0	0	0	0	0
GGGATCCCATTATGCC	ref_1903_reverse	17	16	19	19	18	18	5	11	24	9
CGTCCGTAGTATGGTT	ref_1903_reverse	29	27	28	21	31	21	37	16	33	32
ACTTCTCTATACCCCC	ref_1903_reverse	8	6	6	2	6	6	12	4	9	3
ATCGGTGGATGCGATT	ref_1903_reverse	43	35	42	41	32	45	38	44	33	30
TGGTATATCGCGTTTG	ref_1903_reverse	15	14	20	9	12	12	16	12	16	6
GTCCTCGCTGAAGGCC	ref_1903_reverse	26	13	34	28	26	27	17	26	30	23
CTATGTTTTGTAGGGT	ref_1903_reverse	11	27	10	13	23	5	13	13	12	7
CTTCCTCGCAGTGCTT	ref_1903_reverse	36	40	51	35	33	42	40	48	35	41
TGGTAATAACAGCATT	ref_1903_reverse	113	89	106	98	74	86	100	107	104	93
TCGGTCGGCTTCCTAA	ref_1903_reverse	27	59	43	27	48	27	47	23	60	23
GGATCTCCGTTTCCTT	ref_1903_reverse	44	34	70	47	44	56	52	40	54	45
ACCGAATTGGTATGGA	ref_1903_reverse	0	1	0	1	0	0	0	0	0	1
TAACCTCAGTATGGAT	ref_1903_reverse	5	2	3	4	4	3	4	6	4	3
TATGATATCTAACCGT	ref_1903_reverse	12	4	14	8	10	11	6	12	8	16
CCGCCTAAGCCGGTCA	ref_1903_reverse	36	23	43	27	32	31	38	35	46	20
TGCGTCCTAAGGTTAG	ref_1903_reverse	32	30	44	28	36	26	37	27	49	29
GGGGAGCTCCATGGGG	ref_1903_reverse	346	249	400	311	234	301	277	299	266	293
CCCCATGGCATTGCCA	ref_1903_reverse	14	13	11	11	10	12	14	21	13	17
GGGGCGTATCGATTAT	ref_1903_reverse	0	0	0	0	0	0	0	0	0	0
ATCCGGTCCCACATTT	ref_1903_reverse	25	20	25	21	32	17	20	20	30	32
TGAATATTGATGCATC	ref_1903_reverse	342	329	426	375	339	329	363	308	365	322
AACGTCAACACTGGTA	ref_1903_reverse	55	55	67	71	50	45	53	75	63	47
GCATAGAGAGGCTTTA	ref_1903_reverse	223	217	267	228	192	204	202	243	220	203
TTCACGGTTCTGTCCA	ref_1903_reverse	56	36	57	47	43	39	38	47	50	35
CCGCTGTTACCAAAGT	ref_1903_reverse	7	7	9	11	12	11	7	3	12	7
TTTGTGGACCGCTTTT	ref_1903_reverse	27	42	37	37	35	48	43	37	31	36
AGAATATTGATGCATC	ref_1903_reverse	0	0	0	0	0	0	0	0	0	0
GGGTAGTGCCTCCTTC	ref_1903_reverse	83	94	123	105	85	83	82	86	97	85
TTCAACATCGTGTTCT	ref_1903_reverse	58	38	59	42	40	46	44	41	54	24
TAGAGGCCCCCGCTAG	ref_1903_reverse	98	94	128	108	80	115	117	86	105	93
GCGAAACGAAACACAG	ref_1903_reverse	0	0	0	0	0	0	0	0	0	0
ACGGGGATAAGAAGTA	ref_1903_reverse	46	42	45	50	46	50	47	33	45	46
AGAAGATTGACCTTCA	ref_1903_reverse	51	50	58	47	57	43	51	56	52	42
GCCCCCTCGCTCGTGG	ref_1903_reverse	22	24	28	17	29	14	41	19	32	22
GGATGTCACCTGTCAA	ref_1903_reverse	8	10	8	10	3	8	11	13	11	10
TCCAAGTCGATGTAAA	ref_1903_reverse	200	211	228	196	215	195	194	181	213	160
TGAGCCCTTTTGCGGT	ref_1903_reverse	2	4	5	4	8	6	3	3	4	3
ACAATCGGGGGGCTAT	ref_1903_reverse	0	0	0	0	0	0	0	0	0	0
TTTCACATATGCGTTG	ref_1903_reverse	8	8	14	13	15	9	6	11	11	7
TACGCATATTTTTGAC	ref_1903_reverse	58	49	50	44	54	44	52	44	39	39
CCGCCTGACTTAGCAA	ref_1903_reverse	119	123	156	155	103	140	122	133	140	156
GTTTAACCAAGTACAT	ref_1903_reverse	22	16	24	24	17	19	20	11	13	23
ATTGAAAACTGTCGGA	ref_1903_reverse	29	51	37	26	28	29	44	41	31	28
CAAATCATTCCTTATA	ref_1903_reverse	9	10	8	9	7	5	3	6	0	9
GGTCAGTAGCAGCTTA	ref_1903_reverse	65	66	81	73	68	55	71	63	106	86
ATTTGGGCGTTCTACG	ref_1903_reverse	10	11	15	12	11	10	16	12	12	5
TTGTGTTCAGGGCTGA	ref_1903_reverse	61	49	75	60	85	69	59	61	68	56
CATTCTTGGTCAGCTT	ref_1903_reverse	0	0	0	0	0	0	0	0	0	0
ACGATTTTGGACCTCT	ref_1903_reverse	67	48	87	86	62	71	57	73	71	57
CGCTCTCGTGCTTTTC	ref_1903_reverse	30	30	37	32	24	38	36	36	27	24
GCTCCCACAGTGACGC	ref_1903_reverse	20	24	24	14	20	25	42	20	21	20
TTAACAATGTCGGACA	ref_1903_reverse	28	27	45	30	30	40	31	39	31	23
GGCAATTCGAAAATCA	ref_1903_reverse	0	0	0	0	0	0	0	0	0	0
CCAGAACGCCTAACAT	alt_5786_new	21	34	27	19	49	18	41	19	58	21
GGGTGAGTCTCAGTCT	alt_5786_new	10	21	10	14	22	12	22	20	13	12
AATAACGTTACATTCC	alt_5786_new	0	0	0	0	0	0	0	0	0	0
TTCTCTATCGGGCCGT	alt_5786_new	41	41	25	38	53	22	54	23	45	28
TGCTCTCGGTTACATG	alt_5786_new	24	33	31	22	27	34	51	11	38	21
TTACTAGCTTAGTGCG	alt_5786_new	16	38	22	7	25	9	38	14	39	14
GTGACTACACCCGCCA	alt_5786_new	0	0	0	0	0	0	0	0	0	0
GTGACTACACACGCCA	alt_5786_new	144	275	199	174	325	140	286	148	307	135
ACATTACTACGCTACC	alt_5786_new	9	20	9	4	13	6	30	6	20	5
CAGCTTCAGCTGGACA	alt_5786_new	0	0	0	0	0	0	0	0	0	0
ATAGTTTCAATCGGCC	alt_5786_new	0	0	0	0	0	0	0	0	0	0
GTCAAGTCGTCATAAC	alt_5786_new	131	190	181	115	218	138	214	117	208	112
TATTAAGTGTGCCACC	alt_5786_new	0	0	0	0	0	0	0	0	0	0
TTGGTAGGGGGCCAGA	alt_5786_new	6	11	5	6	9	1	9	6	7	5
GGGTGTTCCCTGCTTC	alt_5786_new	47	74	45	36	71	39	70	45	88	43
TGACCGCGAGATGTTG	alt_5786_new	0	2	0	0	0	0	0	1	0	0
AACAACTCTTCTACGG	alt_5786_new	3	11	2	5	17	6	12	3	8	11
GCATCCTACGGTCTGT	alt_5786_new	0	0	0	0	0	0	0	0	0	0
CGTACCCCTCGTGGTG	alt_5786_new	0	3	1	1	1	0	2	1	2	0
CTTTTCTCTGAGGCCA	alt_5786_new	0	0	0	0	0	0	0	0	0	0
ACGCGGCTCGAGCCCT	alt_5786_new	23	55	29	36	45	22	48	22	47	24
AGGATACCTTTGTGTT	alt_5786_new	8	24	14	17	25	8	25	10	25	10
CAGGATCTGATGAATA	alt_5786_new	0	0	0	0	0	0	0	0	0	0
TCTCCTTTAAGCTCCC	alt_5786_new	0	0	0	0	0	0	0	0	0	0
GGGCATGGAAGATGCC	alt_5786_new	0	0	0	0	0	0	0	0	0	0
TACGGGGTTTTAACCA	alt_5786_new	5	16	11	6	20	13	26	15	9	22
AGGTTGCCTCTTAGGG	alt_5786_new	0	0	0	0	0	0	0	0	0	0
GTCGGTGCGCACCATA	alt_5786_new	38	54	28	20	62	16	49	30	66	32
ATACCGACATTTTGCT	alt_5786_new	19	34	20	16	25	24	31	16	30	17
GTATTAATTTGGATCG	alt_5786_new	35	41	48	21	46	35	80	35	58	22
GGTTCTCGTGGCGTCT	alt_5786_new	0	0	0	0	0	0	0	0	0	0
ATCTTGCTTTGCAGCT	alt_5786_new	35	54	45	49	72	29	59	32	55	33
GTGACTACACACGCCT	alt_5786_new	0	0	0	0	0	0	0	0	0	0
AGGAGAGTTCTTTCTT	alt_5786_new	19	22	27	11	26	21	36	23	31	13
GGAGGTTAGACGTAAT	alt_5786_new	37	79	43	45	70	39	76	40	83	42
CCGGGCTCATCTTATT	alt_5786_new	30	59	34	26	43	32	46	28	72	28
TAGTGGCACACTAACA	alt_5786_new	0	0	0	0	0	0	0	0	0	0
ATCACGCCCGGTTTTC	alt_5786_new	0	0	0	1	0	0	0	0	0	1
TTCGCTTAGACAATGC	alt_5786_new	3	15	8	6	9	4	13	2	19	4
ATCCCCGTCGATGAGC	alt_5786_new	0	27	1	0	23	0	40	0	20	0
GGATATCACCTTATTT	alt_5786_new	0	1	0	0	0	0	1	0	0	0
GTTCTCTTTATTCACC	alt_5786_new	23	35	23	17	44	18	45	20	35	25
TCCCGTTGTGCCCCCG	alt_5786_new	27	34	25	25	41	25	46	20	54	15
CACTTGCATGCGCCTA	alt_5786_new	17	37	22	19	54	19	43	24	31	11
TATAAGGGTCACCTCC	alt_5786_new	11	15	17	7	14	12	17	7	29	10
TGCCCCAGTTCATTAG	alt_5786_new	0	0	0	0	0	0	0	0	0	0
CATGTTACTGTTTTTT	alt_5786_new	23	30	36	27	38	30	44	26	39	31
TTACATTAAGTCAGCT	alt_5786_new	2	15	6	6	5	4	8	8	10	3
ATCTTGCTTTGACCGC	alt_5786_new	0	0	0	0	0	0	0	0	0	0
AACGCAGTCGCACTAA	alt_5786_new	105	163	131	93	173	96	186	81	155	80
GGACAACTGAATGTTT	alt_5786_new	2	2	2	1	4	0	7	2	3	1
TCTTATTTTCCACTGG	alt_5786_new	0	0	0	0	0	0	0	0	0	0
ATTTCCCTTCTTGCCG	alt_5786_new	0	0	0	0	0	0	0	0	0	0
CCTTCATCTATGTAGG	alt_5786_new	27	53	25	33	53	19	37	28	67	18
GAGGTTCATAGTGTGT	alt_5786_new	0	0	0	0	0	0	0	0	0	0
CCACCACTATTTTAAC	alt_5786_new	16	20	18	12	16	10	23	12	23	15
GTACTTGTTGTGAGCT	alt_4242_missing	32	43	40	27	37	17	40	28	32	24
TTGAAGGGTCTGGACT	alt_4242_missing	27	32	21	20	18	22	34	10	35	18
AGTTTAGGTCTGGCGT	alt_4242_missing	21	33	27	25	39	18	39	18	45	17
GCGTTTATTTTGCGAC	alt_4242_missing	15	32	26	13	41	8	41	15	39	16
GTTGGGCCGAACGCAC	alt_4242_missing	10	8	8	10	7	17	14	13	25	7
CCTGGTGGTCGCTCGA	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGCCACATCGAA	alt_4242_missing	21	34	26	13	32	11	24	11	36	20
GCGTTCGATACTCCGT	alt_4242_missing	19	30	35	11	26	21	28	17	34	21
TTCCATTTGTAACCGT	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
CAATGCCAACGGGTCT	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
GCCGGAACGGAGGTAT	alt_4242_missing	65	77	77	54	98	51	83	54	89	65
GATATGTGGCTAAATA	alt_4242_missing	10	22	15	11	25	15	18	15	14	12
AAATATTTATCAGTAC	alt_4242_missing	15	23	27	11	42	20	31	14	31	17
TCACTGTGGTGCGCGT	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
CACCACGTTCTGGAAT	alt_4242_missing	35	67	28	23	80	30	78	31	87	32
ACCTTCATACGTCCTA	alt_4242_missing	1	2	1	0	4	1	0	0	5	0
TATGGACTTTATTATT	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
ACAGATCCCGTTAGAA	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
GCGCCGATTGCTTTAA	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
TACGCGCTTGAAATGC	alt_4242_missing	9	11	16	14	16	12	15	6	23	6
TATCGTAGTGATGCAC	alt_4242_missing	29	38	35	21	48	24	50	24	49	23
AGATCGGTTCTACAAC	alt_4242_missing	14	25	23	22	44	22	31	20	38	20
GATCTGGACAACCATT	alt_4242_missing	4	10	19	10	17	13	25	10	11	7
TGCGTGATTCTAGCTT	alt_4242_missing	25	39	22	24	47	19	51	30	59	18
ATCCTTGTAATTATTC	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
GAATGGTTTTCGATCG	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
CCTGAATTCATATTTT	alt_4242_missing	60	96	73	49	105	52	87	53	108	64
GGCCCGACGTAACAGT	alt_4242_missing	61	91	73	54	123	65	106	58	113	77
TGTGTTTCGTATTCCC	alt_4242_missing	27	52	28	26	49	28	61	27	70	23
CAGGCTCAGACTCGGC	alt_4242_missing	2	16	20	5	14	11	13	13	23	11
GTTCGTCTGATATATT	alt_4242_missing	12	13	12	10	13	6	22	10	10	9
AATAGCACGCACACGT	alt_4242_missing	21	26	18	16	26	21	43	14	26	12
GCCCAGCGAAATGAGC	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
CCTCGTAGCAGCTTAA	alt_4242_missing	8	23	8	3	17	12	35	8	19	6
TGACGAAATTGAACGC	alt_4242_missing	40	54	36	48	75	40	61	48	86	44
TTTTCCAGAAGTGGTT	alt_4242_missing	18	26	9	13	20	14	12	9	19	4
CGGGGGACAGTACGTC	alt_4242_missing	5	5	0	1	7	2	3	2	2	2
TTAAAACTTCCCCATC	alt_4242_missing	7	7	1	7	6	1	5	5	5	4
CGGCCCATCGGGTACT	alt_4242_missing	22	95	35	33	76	28	110	28	91	24
GATTTGCAGGCCCTCT	alt_4242_missing	32	49	32	40	40	34	49	20	35	31
CAGTTTACATAATACA	alt_4242_missing	40	34	23	13	40	22	56	24	46	22
AATGTGGTTGCTGAGG	alt_4242_missing	10	17	17	19	18	12	19	9	13	12
CTTCCGTGTACAATCT	alt_4242_missing	0	0	0	0	0	0	0	0	0	0
ACATTGGGTTTTCGTA	alt_5760_new	0	0	0	0	0	0	0	0	0	0
TAAGGCTTTCGCCGTG	alt_5760_new	51	75	72	42	73	44	97	53	77	45
TCGCGATGACCCCTCG	alt_5760_new	0	0	0	0	0	0	0	0	0	0
AGCCCATTGTCAGAAG	alt_5760_new	50	51	47	28	73	25	43	30	59	24
GACCTCAGTCGCCATG	alt_5760_new	62	89	67	58	114	69	110	63	99	62
GGTTGATCAGGGGACT	alt_5760_new	37	35	35	35	37	31	38	23	38	22
GTGGGCAGGGTTCATT	alt_5760_new	73	96	86	67	88	73	113	65	133	55
TTATATAGAGATATTA	alt_5760_new	3	0	2	3	2	2	3	1	1	1
CCCCTCACTCATCACA	alt_5760_new	38	63	59	47	44	44	63	44	61	42
TTGAACACCCTCCGTC	alt_5760_new	106	217	128	109	250	91	208	107	196	94
CCGCTTTGTTACGTTC	alt_5760_new	110	223	119	113	228	113	193	102	211	93
CGGAAGACTCTGTTCA	alt_5760_new	66	87	96	70	92	68	84	57	97	49
ACCTTCTTTCTTCGAT	alt_5760_new	0	0	0	0	0	0	0	0	0	0
TCAACCCTGCGTCTTG	alt_5760_new	20	26	31	32	34	22	52	21	44	21
GAGCTCCTTGTATATC	alt_5760_new	5	2	3	3	6	2	1	4	5	3
TGTAATATGGGCCACC	alt_5760_new	73	83	72	45	79	73	93	49	116	52
TTCCCTAAGATGGTTG	alt_5760_new	36	47	38	45	55	54	45	29	39	43
GATCAAGGTAAGCGTG	alt_5760_new	34	33	48	29	37	49	43	26	49	25
CGCACTGTAATCTGGG	alt_5760_new	143	180	171	151	200	135	200	147	190	146
ATCGTTGCTTAAAGGT	alt_5760_new	58	55	51	49	57	53	64	45	67	43
TGCTGGCTTCTGTTCC	alt_5760_new	38	43	42	40	71	39	49	35	52	30
GAATCCTGTGTTGGAA	alt_5760_new	21	20	27	18	30	19	25	20	28	21
CTACAAGTGGGTTCAC	alt_5760_new	89	101	83	81	110	77	118	69	124	51
GCTGTCTTTGGATCTT	alt_5760_new	38	75	58	37	72	54	61	50	64	28
TTTCACCAGCTAGGTG	alt_5760_new	45	62	42	46	70	50	48	40	71	40
AACGTCCTTCTACCAT	alt_5760_new	146	173	166	171	192	161	191	122	213	117
GCCTAATATTCGGTTA	alt_5760_new	10	10	6	11	10	9	17	9	7	11
TTTTAACCGATTGTAT	alt_5760_new	26	40	30	21	36	30	36	20	37	30
CCCATGATAGTCGGTA	alt_5760_new	152	260	152	138	277	146	253	125	277	132
GTCGTACCATGCGGCT	alt_5760_new	191	238	216	203	249	176	273	160	276	154
AGCTAAACGTGTATCT	alt_5760_new	0	0	0	0	0	0	0	0	0	0
TTTAAGATAGAAATTC	alt_5760_new	0	0	0	0	0	0	0	0	0	0
GCCTGCAATGATATGC	alt_5760_new	25	43	18	27	36	14	25	9	37	15
AGGACCCTTCCCCCAT	ref_5760_new	229	232	235	200	184	206	222	162	243	183
TTGCCTTGGGGGAACC	alt_5760_new	30	37	40	30	35	19	28	31	39	25
AGGCCTCCCTGTCGTG	alt_5760_new	24	76	41	39	101	30	76	35	92	32
ACGTCGGCCCTGATAA	alt_5760_new	7	7	2	3	7	0	4	2	2	3
CGGGCACCTCGGAATG	alt_5760_new	0	0	0	0	0	0	0	0	0	0
CGGTGTGGAGGCTTTA	alt_5760_new	0	0	0	0	0	0	0	0	0	0
TACTACTGCTTTCGGT	alt_5760_new	232	239	245	208	249	218	247	190	262	172
GATTGTCACCCCCCTT	alt_5760_new	58	201	87	86	236	55	250	78	233	77
CAGATCGTTTACCTAA	alt_5760_new	0	0	0	0	0	0	0	0	0	0
GGTGACTCATATATGA	alt_5760_new	0	0	0	0	0	0	0	0	0	0
CCTAGTCCTGTATCCG	alt_5760_new	6	14	6	6	6	8	19	18	21	3
AGTGACCCCGGCTCCT	alt_5760_new	0	0	0	0	0	0	0	0	0	0
ACATGGAGGCCACCCA	alt_5760_new	10	25	27	12	18	10	14	20	18	14
GTTTAATTCTGTAGCC	alt_5760_new	0	0	1	2	2	0	2	2	1	0
AGCAGCCAGGTATGAT	alt_5760_new	0	0	0	0	0	0	0	0	0	0
GAGGTGAGGCGCTCAT	alt_5760_new	0	0	0	0	0	0	0	0	0	0
GTGCTGTCTGCAGATA	alt_5760_new	40	65	60	27	81	38	98	60	68	54
AGGTACAAGGGACCTC	alt_5760_new	41	52	38	36	45	24	49	33	55	25
GCTGACGGCACGGAAG	alt_5760_new	30	33	34	18	32	25	23	23	33	23
CCTTGTGTTGTTGTCA	alt_5760_new	4	27	5	1	26	3	29	4	29	5
GGGACGGGTATTATCA	alt_6078_new	9	15	11	9	29	7	13	6	7	13
CAAGCAATTCCTCCTG	alt_6078_new	0	0	0	0	0	0	0	0	0	0
GGCGCTCAAGACCTTT	alt_6078_new	31	41	50	49	35	35	46	49	50	26
TATACAGTCTCTTCCT	alt_6078_new	27	42	29	42	32	27	46	26	33	37
TAGCGGGCGTAATACC	alt_6078_new	26	49	39	45	44	43	67	19	54	34
TTTCCCGTTGCTGAAC	alt_6078_new	42	60	57	55	53	42	73	44	72	34
TACCGCCCTGAGCTCA	alt_6078_new	21	18	26	22	21	17	25	20	27	11
AAGGGTTTAGATCACC	alt_6078_new	42	53	39	35	39	44	41	38	38	38
TGATCGGCCAAATACT	alt_6078_new	47	74	59	58	53	57	77	57	71	45
GGGGTACATTTTTGGA	alt_6078_new	114	131	120	108	145	83	112	114	121	117
ATTGGTTGGCGCCACC	alt_6078_new	19	16	17	8	16	8	24	5	16	11
CGCCTTGATGTATCTA	alt_6078_new	8	4	7	5	13	5	12	9	12	3
AGCGCCTTAAAAAGAC	alt_6078_new	0	0	0	0	0	0	0	0	0	0
TCCCAAGGCTACGCCT	alt_6078_new	13	23	27	13	19	14	32	14	21	11
CCCTTGGTCGGGTTTG	alt_6078_new	100	112	116	113	140	109	146	77	130	81
TTTGGGCATTTTTTGA	alt_6078_new	33	44	38	34	40	30	36	23	50	19
GAGCCAAAAGTAGTAG	alt_6078_new	40	57	64	56	54	46	90	37	55	34
ACTACATTTATTTGTG	alt_6078_new	13	21	20	25	43	9	20	16	32	13
ACGCCAGCTACACGTA	alt_6078_new	0	0	0	0	0	0	0	0	0	0
TAAAACTTTTGTGGGG	alt_6078_new	0	0	0	0	0	0	0	0	0	0
CTCTCTAGTCTTTTGT	alt_6078_new	10	11	8	8	12	9	14	5	19	3
GATTCATGCTTCGGTA	alt_6078_new	15	21	14	15	34	18	19	13	22	8
GCATACGATGCATAGG	alt_6078_new	80	141	109	100	161	79	128	96	118	85
TCCGTCCGTATCCGGT	alt_6078_new	23	17	10	10	7	6	11	11	13	7
TGTGTAACCTCTTGGT	alt_6078_new	21	39	28	34	40	36	54	26	48	35
AGGCTGGGGAGAGTGT	alt_6078_new	21	38	31	29	33	25	39	24	32	24
CGCCACCGTGGGATAA	alt_6078_new	0	0	0	0	0	0	0	0	0	0
TTTTAGATTATCGGCT	alt_6078_new	63	97	79	56	98	65	107	67	79	62
CAGGCTGGCTGCGTTC	alt_6078_new	22	29	24	29	22	23	23	18	47	24
CTCGGATTCTAACGTC	alt_6078_new	98	140	101	83	132	91	113	76	129	69
TAGTACGAACCTGTTC	alt_6078_new	7	13	7	11	11	9	13	6	8	4
CGGGAGATACGCGTAG	alt_6078_new	5	0	1	0	8	3	5	10	6	1
TTTTGAAGCACCTATT	alt_6078_new	7	15	19	18	19	14	26	12	20	12
ACATCGATACCAGAAC	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
ACTGCTGGAGTTAGCA	ref_2349_RC	10	16	20	10	20	16	21	13	12	9
GATAACTTGCACTTTA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
TCAAATAAATTGCATC	ref_2349_RC	76	71	106	79	82	67	95	70	70	63
TCTTGTGCTTACGTGT	ref_2349_RC	13	16	15	8	20	11	26	12	23	2
AGCTAGTATGTACTCT	ref_2349_RC	31	68	53	34	74	51	71	35	53	37
CCGCTACGTGTAAATA	ref_2349_RC	5	8	10	1	5	4	10	6	9	4
ACGTTGTTCTTCTCCA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
ATTCTAGCGACCTTCT	ref_2349_RC	96	102	125	76	100	110	100	94	100	88
CTCCCTTATCTATCTC	ref_2349_RC	13	7	11	8	15	11	8	6	16	11
GTTGGATAGAGGTGGC	ref_2349_RC	37	48	51	43	54	52	58	44	58	34
TTGGTCTCGGCGGCTT	ref_2349_RC	52	47	65	54	52	45	41	40	52	47
ACTATCCTTCCAAGTG	ref_2349_RC	12	20	18	17	21	7	22	21	25	10
TTATCAAACTAACGAC	ref_2349_RC	50	67	65	59	66	73	51	71	76	58
GTGCCGCCTTGAACAT	ref_2349_RC	63	64	72	64	66	61	55	53	52	43
ACGCTTCCTTGACGAT	ref_2349_RC	25	24	14	11	9	26	36	17	17	17
GATAACACCTATGCGT	ref_2349_RC	78	91	79	74	96	69	83	75	87	56
CCTGATTCGTGGGCTA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
GAGTTTTTTGTAACTG	ref_2349_RC	6	8	7	8	14	12	10	5	10	2
AACTGGTCGTTTGGAC	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
ACGATGCACCCGCTAA	ref_2349_RC	29	30	19	20	36	22	31	10	34	14
AATGTCCTCTCCAGTT	ref_2349_RC	48	52	71	63	70	63	54	50	74	47
GTAGGGTCTACACAAC	ref_2349_RC	33	54	46	38	45	37	54	37	56	36
GCTTCTTCACGAGTCG	ref_2349_RC	14	17	23	27	31	14	21	14	22	19
GCTCACGCTGTTATCC	ref_2349_RC	12	3	7	18	7	12	13	6	18	9
AGGATAAGTTGAACTT	ref_2349_RC	51	45	74	72	56	68	72	62	62	45
TCAAATTTTGGGCCGC	ref_2349_RC	6	11	7	7	12	5	14	3	9	6
CTTTATGTATTGCAAC	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
TGGACCGGAAGTTTCG	ref_2349_RC	17	18	13	12	12	17	20	15	11	9
TTACAGTAACTGAGTC	ref_2349_RC	8	12	10	18	12	1	13	5	8	10
AACTTTTACCCGACAA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
CTGAGCTACACCCTCA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
TCCCTGGCAAACGTCT	ref_2349_RC	48	53	53	45	60	47	56	39	53	42
GAAAGTTGTTCGATTA	ref_2349_RC	12	19	16	15	24	11	29	19	20	27
CTCAGTTGTTCGGTAT	ref_2349_RC	20	30	23	15	31	18	21	13	26	12
CTTATCGAGTTTTGGG	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
AGTTTTCGTGGCCGAT	ref_2349_RC	21	27	24	17	19	22	19	14	24	15
GTATATCTTTGATCGG	ref_2349_RC	22	27	26	28	35	24	39	13	33	20
CTGTGCTACACCCTCA	ref_2349_RC	157	238	190	173	232	169	232	142	243	146
CGCGTTCTTTCGACCC	ref_2349_RC	146	211	172	145	206	156	204	153	211	114
TTGGGCCTTTGCTAGG	ref_2349_RC	23	26	31	25	25	28	22	26	33	27
ACTCGCATCGCCCGAG	ref_2349_RC	33	20	38	26	35	31	25	26	31	20
GACGCATGCGCATCTT	ref_2349_RC	23	32	30	29	21	31	36	27	47	23
TTGTGCTTAGTAAGTT	ref_2349_RC	29	28	28	36	30	26	38	25	43	26
ATCGCGGTAGGTTAAG	ref_2349_RC	39	38	47	39	38	31	45	25	37	19
CTTCGGCCTGCTAAGT	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
TACGCCTCTTGCGCAT	ref_2349_RC	4	9	11	6	12	11	12	6	7	6
ACTTGGAGCTTTGATC	ref_2349_RC	338	357	401	345	386	327	354	326	387	286
CGGTTCAGGGGTTTAT	ref_2349_RC	84	127	148	99	129	81	130	92	157	65
GCATCTGACCACTGAC	ref_2349_RC	66	66	65	81	94	59	91	48	81	45
CAGGATTGCTGGTTTT	ref_2349_RC	2	7	9	13	18	12	16	4	14	12
TCGGGCAATCAGGATG	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
GCTTCTTCACGAGTCT	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
TGTTGTACCCCAGGGA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
TTACCGCGAGTTATAA	ref_2349_RC	130	254	169	171	295	135	288	117	295	122
TCAGCTTTTACGACGT	ref_2349_RC	26	32	21	19	22	24	38	31	33	26
TTGCAGTCTCCGGCAC	ref_2349_RC	25	32	41	27	25	24	36	26	37	19
TTATCAAACTAACGCC	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
CGCGTTCTTTCGCCCC	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
CGATAGAACCAGTTTC	ref_2349_RC	12	17	12	10	15	5	15	8	9	10
ACCACATACCTCTAGA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
ACTACGAACCCGCTGA	ref_2349_RC	0	0	0	0	0	0	0	0	0	0
CTCCGGACCTCGTGCC	ref_2349_RC	12	28	12	12	28	12	36	12	40	7
CTGTCCACCATAAGCG	ref_2349_RC	131	113	142	129	166	148	140	111	161	126
TCCTTTGTAGAATATA	ref_2349_RC	74	70	80	62	85	89	93	59	75	65
AAGGTATCCTTTGAAG	ref_2349_RC	30	22	20	30	25	22	27	21	22	25
TCTGAATTTCTTGTGA	ref_2349_RC	31	48	34	33	45	22	49	29	62	27
ATTATTCCGACCTATT	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCTGGGTGTCTCT	ref_959_upstream	4	2	7	10	4	10	11	3	5	2
AGTCTCACACGTGCGT	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
TTACGATATCTCGGCT	ref_959_upstream	12	9	15	13	10	9	23	14	9	10
CCGTCGCCATTAACGT	ref_959_upstream	118	154	149	130	108	114	119	135	127	108
TCCCGCATCCAAGGGG	ref_959_upstream	56	114	53	55	91	43	146	50	97	37
TAACTCAGTAGTAGGA	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
TATGTTACGTCCGCTG	ref_959_upstream	153	156	183	158	192	151	163	134	169	123
TTGTTCTTGTTTGGCA	ref_959_upstream	61	37	71	54	54	49	58	42	49	45
TGTTAAGCGATGACGC	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAGTGGTTACCCA	ref_959_upstream	68	54	58	64	51	59	72	58	60	49
AAAATGACACTCAGAT	ref_959_upstream	1	5	9	3	2	4	5	2	8	4
TTCGGCAGATTCTTTA	ref_959_upstream	9	5	8	4	9	3	6	4	5	3
TGCTGAGACATTTGTT	ref_959_upstream	3	1	4	1	1	1	2	3	0	3
GCTCCAAAGTTTTCTA	ref_959_upstream	14	15	18	21	23	13	17	11	17	14
ATAGGTACCGATGTGC	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCGCTGGGTTGT	ref_959_upstream	54	52	67	58	52	47	67	54	53	39
AATTTAGTCTACTCAA	ref_959_upstream	30	54	48	41	45	42	41	39	25	28
TTTGTACTGACGCACG	ref_959_upstream	126	114	138	145	119	126	122	116	111	101
AATCAAGGCACTTGTC	ref_959_upstream	45	65	68	35	53	49	50	52	60	50
TGACGCGTAAAGGTAA	ref_959_upstream	30	33	33	39	32	30	33	18	36	23
TTTTCGCCGGGCATTT	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
TGTTACAGTCGCCTTA	ref_959_upstream	60	65	91	68	80	64	80	75	89	65
GCCCACGCTACCTCAT	ref_959_upstream	29	25	51	38	42	38	44	34	40	19
ACGTTTGTACATCTGG	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
TCCGTTCTTGCTTATT	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
CTACTCCTTCGTTATA	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCTACACATGTT	ref_959_upstream	38	40	35	38	42	24	32	30	41	27
AACGTAAGGAGCAATA	ref_959_upstream	65	84	104	85	89	85	73	80	99	80
TAAAGGTTATTTGGGC	ref_959_upstream	0	0	0	0	0	0	0	0	0	0
ACTGGCTCCTCAGTAG	ref_959_upstream	26	30	19	16	23	7	25	18	35	10
TTGAGCGTGTAGGGTG	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
TAATTATCTTACGCGG	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
GTACCGTAGTTCCCAT	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
AGAGCACTTTATGCGG	alt_2434_missing	3	11	11	2	1	2	9	4	9	4
CAGTGCTCAGTCTATC	alt_2434_missing	18	26	15	20	28	9	19	24	27	10
GGTGTAAATTTAGGCC	alt_2434_missing	38	73	38	38	67	31	75	23	89	31
ACACAGACTATCGGAT	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
GTTCTTTGCAGTTTTA	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
GTGCCCTTCAATGCAC	alt_2434_missing	4	12	8	9	17	3	22	5	17	4
GTTGGATTCTGCGAGA	alt_2434_missing	6	2	2	0	1	1	3	3	4	6
TGCCACCCCGTCAGCT	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
GCACGCTACAAGCAGA	alt_2434_missing	9	13	7	7	9	4	8	7	12	5
TATTCCTCCTGTTTGG	alt_2434_missing	4	13	4	4	19	11	19	8	28	4
GGATCGTCGGAACTCA	alt_2434_missing	2	23	5	3	13	3	21	4	14	2
CGCCTCTTCAAATTCA	alt_2434_missing	40	84	51	48	96	32	109	27	94	41
TTCTTTGTTCACAGAG	alt_2434_missing	2	16	8	6	5	5	7	5	9	11
CATGAGTGTCATCAGT	alt_2434_missing	10	46	19	18	32	13	24	8	27	13
CCTGATGGGAATTCGG	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
GAAGTATCTTACCCTT	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
TTTTATAATAGAGTGT	alt_2434_missing	7	12	6	2	13	8	8	5	6	8
CGTCCGAAGCTAGCCA	alt_2434_missing	5	13	8	3	9	8	13	3	11	5
TGTCAGTCTTCGCGGG	alt_2434_missing	3	15	2	5	11	8	12	13	13	7
CCTCTTAGCTTGCTGG	alt_2434_missing	0	1	0	0	1	1	0	0	3	0
CTTTTGTTACTATGCT	alt_2434_missing	7	3	1	3	3	1	5	0	3	3
TTTGATTATAGCTCAC	alt_2434_missing	10	24	14	6	31	4	25	6	23	4
TAACCCCCTGATTTGT	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
GAGGGTCCTCATCGGC	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
CATGTAATTTATGCAA	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
GATCCCGTTTCTTCAT	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
ATCCCATACAGATTGG	alt_2434_missing	2	2	1	1	1	1	2	0	2	0
CAATGTTAACCTTTTG	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
AGTAGCATTTATACAG	alt_2434_missing	2	10	4	7	10	6	12	2	11	3
GTACTTTTATAGCGTT	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
ATATCAGGCCCTGAAC	alt_2434_missing	0	0	0	0	0	0	0	0	0	0
TATGAGCTTAAAAAGC	alt_2434_missing	2	8	3	5	7	3	7	1	9	1
TGTCTCGGCTTTCTAT	alt_2434_missing	10	2	3	4	4	3	6	3	7	7
ACGGGTATTAATCCTT	alt_2434_missing	1	3	2	3	0	1	2	1	2	2
ACCTGCCCTCCCAGCG	alt_2434_missing	7	7	6	7	7	4	5	4	5	4
CCCGCCTGATCTTTTG	alt_5684_new	60	61	86	81	68	94	72	68	92	87
ATTCAAGTTGTCTTTC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CCTAACTACGTCAGAA	alt_5684_new	72	76	101	54	63	79	83	68	89	75
ACCCCTGGGTTCGAGT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TCTGGGGTCTCTTGCA	alt_5684_new	58	52	68	59	36	42	32	52	44	58
CCGAGTGATGTTCGGA	alt_5684_new	24	15	34	27	25	21	24	21	23	29
GTGGCTGTACTGTTGA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TTTGGCTTTGCACTAC	alt_5684_new	52	51	63	33	54	46	55	61	39	35
TGTTGCAGCATGAGTA	alt_5684_new	45	37	56	45	29	38	31	34	35	31
GTAGCCGCCTACGCTC	alt_5684_new	83	92	124	93	81	99	82	105	93	114
ACCGCGCTCACTACCT	alt_5684_new	30	29	34	30	45	32	28	29	27	29
GATCGGTATGAATGTG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CCGTTGATGTAATCTT	alt_5684_new	84	42	80	63	43	59	46	59	57	59
GTTCATTGTAATTCCG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CACCATAGATATAGCA	alt_5684_new	19	19	31	25	27	26	20	24	27	20
GGTTACCGAAGACCCC	alt_5684_new	12	5	14	8	9	3	8	8	4	9
CAAATTTGAATCTCGT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GTAGTGCACCTCTCTT	alt_5684_new	48	45	61	46	53	54	53	54	60	50
TAAGCTATTAACAGAC	alt_5684_new	62	59	103	83	51	43	52	63	71	52
CCAAGGGGATACCCAA	alt_5684_new	20	25	34	19	25	21	27	28	20	19
GGTAAATTATCTAAGT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GATACCGACTTCAATT	alt_5684_new	14	12	28	14	22	15	16	19	10	19
GGATGACAGTTATCCA	alt_5684_new	67	76	84	64	54	64	58	78	74	67
TGGATTCGTGACCGCT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CTAGAATGGACGCTCC	alt_5684_new	26	31	25	22	9	11	31	23	19	5
AGTCTATTGGGCGCTG	alt_5684_new	35	28	46	34	26	39	20	24	24	23
AGAATCTCCTGTGTAC	alt_5684_new	10	17	12	11	21	7	22	13	31	8
TGGAGGCCGTGTGTTG	alt_5684_new	10	11	7	15	9	15	9	12	17	10
AATGTAGGGTTTTGAA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GAGTACGCCGACTCGT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GTTTCCTAGACTCAGG	alt_5684_new	15	19	25	24	23	22	17	14	14	16
TTCTGGATAAGTTGTG	alt_5684_new	53	68	77	63	91	58	64	51	76	48
ATCTCTGTGCTGGCCA	alt_5684_new	1	0	1	0	0	0	0	1	0	2
GCCCGTACGTACCTCT	alt_5684_new	11	24	14	8	14	11	18	11	26	5
TTTATAATGCTCTTTC	alt_5684_new	80	91	143	122	64	96	75	77	78	74
GTTTTCGCAGGCGTAA	alt_5684_new	45	57	72	77	58	72	37	70	53	65
GAGGTCAGCACATACG	alt_5684_new	32	31	48	38	28	31	28	32	38	32
CTGAACGTTATATTGG	alt_5684_new	2	0	6	4	4	1	2	3	3	3
TTAGAGGGCGGTCCGG	alt_5684_new	23	33	36	26	28	30	34	24	30	32
CTGCAATAGGTAAGAA	alt_5684_new	75	87	96	89	64	79	81	55	68	69
GGTCTCTCGAGTCTCG	alt_5684_new	101	98	127	109	101	97	125	83	128	101
TTTTGTTCTTGTATTT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GTTTCGGGGATCATGG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TCCTCCGCGTGATCTC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
ATTTCTCAGACCGGAG	alt_5684_new	45	35	55	26	33	36	40	39	44	47
AATTGGGTCGGTATCG	alt_5684_new	200	151	232	200	146	183	177	216	198	200
CCAGACACGACTAATA	alt_5684_new	22	24	18	14	9	13	21	19	11	12
CCTTGAGATATTTTCA	alt_5684_new	67	33	49	47	25	44	22	60	32	57
AGTCTTATTTCTCCAG	alt_5684_new	33	25	40	32	29	36	36	28	21	26
TCCTATATACTCCGCC	alt_5684_new	40	46	55	49	35	35	45	31	38	37
TTGTGTCTTACGTTAC	alt_5684_new	16	30	23	17	23	11	26	14	32	11
AAACTGCCTGTTTGTG	alt_5684_new	56	46	51	49	55	35	28	66	38	61
GCTCAAACGTGTAGAC	alt_5684_new	42	42	47	45	50	43	43	36	52	41
GCGCGTCGTAGCACAT	alt_5684_new	14	11	24	16	11	14	18	12	16	8
TCTCTACTCTGGTATG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TCCACGCGACAGGAAG	alt_5684_new	198	158	231	186	145	170	166	143	183	179
CTTTCTAAGTTTTACC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TATGGCCGGACCATGC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
ATTTAACCTACACTTT	alt_5684_new	112	98	169	134	117	121	105	128	126	111
CTGAAAATGTGTGGTA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TATCATAATTGGTACA	alt_5684_new	126	97	149	108	109	101	98	93	105	111
GCGTTAATTGATGACC	alt_5684_new	73	31	51	47	31	49	39	40	39	43
ATTAATTTTGTATGGA	alt_5684_new	109	76	137	101	78	75	70	98	79	72
AATTCCTTCTGTAGTA	alt_5684_new	8	11	17	6	11	15	10	5	7	7
AGTTTTGCGGTGTTAG	alt_5684_new	101	98	115	118	121	132	103	100	100	92
ATCCGTTGGAATTGTC	alt_5684_new	68	51	79	54	53	56	52	49	62	46
ATTGAGGTCCGCACCA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CACCACACGTATGGGG	alt_5684_new	348	306	439	382	338	375	338	339	345	348
GAGTTCATTCTCTTTG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CGAGTCGGTAGCAGTG	alt_5684_new	11	10	15	10	9	7	10	10	14	7
TATAGTTAGGATTGAA	alt_5684_new	66	63	79	66	43	57	48	60	55	55
ACACATATTCAATCAT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TTTTTGCTCGTTGGGA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GGCTGTCCGATCTAGC	alt_5684_new	9	6	5	5	6	6	9	8	9	8
TCTGCGTTGCTAAATA	alt_5684_new	18	14	22	21	18	12	23	21	16	17
GGTTTTGCTCGTCTCG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CCGTAAGAATTTCCGG	alt_5684_new	4	7	14	12	11	9	9	11	9	6
AATACTCGCATGTGCT	alt_5684_new	117	94	132	114	98	104	109	100	114	94
ATGTTCGATATACAAT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CCCCGTGGGACATGTT	alt_5684_new	76	59	89	85	56	70	57	83	62	67
GGCTCATCCCTTGCTT	alt_5684_new	10	4	8	5	5	6	4	6	2	8
GGCCTAGAACAAAGAT	alt_5684_new	135	103	143	135	94	101	119	122	123	102
TATCACAGAGACCTGC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
ATCTCATGGGCACGCC	alt_5684_new	79	52	83	67	61	57	46	69	69	62
GTGTGCATAAAGCGCT	alt_5684_new	33	43	54	30	30	22	31	34	37	41
CTTGGGGCTGCACGCT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TTTCCTGACGTCTGAC	alt_5684_new	42	52	76	68	59	48	42	47	60	42
CCTCTCCTATGGTTAT	alt_5684_new	7	3	11	5	1	3	1	4	2	3
GACTTTCTGTGCGCGA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CGAGGGCGTCCCGGCA	alt_5684_new	358	281	454	345	301	317	301	351	341	300
GAGAGCTGCTCGGTAT	alt_5684_new	52	42	60	51	31	56	44	58	50	46
CTGATTCACCGTCGCG	alt_5684_new	79	37	86	54	65	77	63	68	84	44
AGCCGTGAGAATGAGC	alt_5684_new	89	75	109	74	86	92	99	69	92	83
TATAATTGTATGGTTT	alt_5684_new	57	51	73	60	41	64	44	51	53	55
TGGTGTTGGTTTCTCT	alt_5684_new	24	17	33	29	29	18	23	19	13	14
CTAGGTTTTCAATACC	alt_5684_new	49	41	46	49	50	45	44	43	42	40
TTCCCCAGGTACTATC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TATTGGATTCGCAGGG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GTTAGTCTGCAATTGT	alt_5684_new	49	63	59	50	48	49	37	46	47	52
CGCCACCAAGGGAATC	alt_5684_new	55	56	84	77	56	61	50	43	42	64
TGGGTGACACCAATTT	alt_5684_new	20	12	11	17	11	16	12	17	15	14
GTTATAATATCCACAG	alt_5684_new	47	26	42	40	27	33	52	38	29	28
TTTAGGTAGCTCTTGT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
TATCCGTGCTCACGCT	alt_5684_new	63	34	53	52	47	46	35	45	34	46
CGAGTTTTCGGGTTTC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GCTGCTTGGCCCCGAT	alt_5684_new	32	38	58	36	31	36	36	37	30	34
GCTTGACTCGCGCGTA	alt_5684_new	23	12	17	14	18	21	16	11	8	17
CAAAGCCTCTCATTTT	alt_5684_new	84	54	90	61	56	76	70	73	76	55
GCCCTATGTACTATGA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CGATCCCAGCTTTTGT	alt_5684_new	37	26	56	41	24	32	24	39	38	39
AACGTTACTGATCGAA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GTTAAAGACGCTCATT	alt_5684_new	0	0	0	0	0	0	0	0	0	0
ACAAATGCCTCGCGTC	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CGTGGAAACTTAGCCC	alt_5684_new	7	14	23	13	13	13	10	14	14	13
AAAGGTCTTGGGGACA	alt_5684_new	53	53	61	65	42	46	43	49	48	58
TGCCATGGACTAAGAT	alt_5684_new	150	108	141	144	111	128	110	128	125	124
ATGCCAGTTTTCCTGT	alt_5684_new	5	5	5	6	7	6	6	6	7	6
ATCTGTCGTACCGCGT	alt_5684_new	18	25	17	21	17	31	27	23	16	21
CGGCCAAGCCTGTACA	alt_5684_new	43	36	57	53	42	48	48	45	47	52
TTCGAAATGCTGCAAG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GCAATACCACGGCACA	alt_5684_new	9	17	17	13	13	13	7	19	12	11
ATTGGGTTCGTGTACA	alt_5684_new	150	117	173	118	110	113	86	90	142	99
GAGTGACAGGTGTTGA	alt_5684_new	3	6	12	6	13	11	10	4	4	5
ATGGGCCAATCCCTTA	alt_5684_new	0	0	0	0	0	0	0	0	0	0
GCCTGGATGTCTCTTA	alt_5684_new	49	38	34	24	41	24	49	39	40	20
CCTTTTGACGCTTCAA	alt_5684_new	8	12	9	9	11	7	13	6	14	9
TCATTACCGAGCCCAC	alt_5684_new	29	37	59	55	23	32	29	36	52	39
CACCCGGACATACGGT	alt_5684_new	42	28	28	34	21	31	31	32	31	28
TTGGAAGTGTCATGAT	alt_5684_new	24	22	40	28	30	30	36	17	36	28
ACCGGTCCAATACGAC	alt_5684_new	22	58	15	19	56	14	74	18	52	11
CATTGTTCTTTTTGCG	alt_5684_new	0	0	0	0	0	0	0	0	0	0
CTGGTAGTGGGCCTCG	alt_5684_new	4	2	3	5	6	5	2	2	3	8
GTAGCGCGGTGCATTG	alt_5684_new	71	73	88	63	73	51	69	85	85	72
GCTTCTGCAATCTCTA	alt_5684_new	21	20	21	19	15	20	20	19	17	8
TAGATGCCTGGTATCC	alt_3516_fdr	21	12	27	21	14	19	15	24	8	19
GTGGACTGGTGTTTTT	alt_3516_fdr	23	16	32	14	12	16	16	19	26	13
CGTTTCGCCTTTAGCA	alt_3516_fdr	154	83	154	148	102	136	107	102	114	130
ACCCCCTTTCTTCTAT	alt_3516_fdr	43	35	44	43	47	43	35	52	50	42
GTCATGTCTTGCGTCC	alt_3516_fdr	10	7	8	7	7	11	12	4	4	5
TTCTTATCTGGCGGCG	alt_3516_fdr	19	20	30	37	13	28	18	26	16	16
GCACGTTCAACGCTTA	alt_3516_fdr	0	0	0	2	0	0	1	0	2	2
TAACCACCAACGGTTC	alt_3516_fdr	102	89	98	85	85	94	86	94	73	82
GATTAGTTCCTTGTCT	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
GCCAAGTTAAAGCGTT	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
GCCATCCATTCCCGCT	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
GAATGTTCGGGTATCC	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
GGGTAATTTTTTTCCG	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCGACAATTTGCT	alt_3516_fdr	24	34	49	40	32	33	26	32	20	33
CCGTCGAACCATGCCG	alt_3516_fdr	11	24	11	11	23	9	11	9	11	11
TCGTTTGGCTGTACTT	alt_3516_fdr	46	43	60	64	47	51	64	44	70	50
TGGATAGTACCTCTGT	alt_3516_fdr	27	27	39	36	19	27	35	30	24	32
CAGCATGCACGGTTCC	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTACGCCGCGCCC	alt_3516_fdr	4	10	3	8	16	5	8	6	15	3
TTGAAAAATGTTCACG	alt_3516_fdr	21	16	24	37	22	29	21	18	19	32
TAGTGACGGGGCGCAC	alt_3516_fdr	26	15	33	23	12	22	20	22	22	27
AATCGTCACGTTGTTC	alt_3516_fdr	41	21	41	37	20	24	25	31	29	44
TGTCGAATACCTTGTG	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTGTATCTAGAAC	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
AGCCAATGTGGATGTG	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
CCATCACTCAGTGTTG	alt_3516_fdr	28	28	29	16	36	20	38	23	34	30
ATCACGGCCTTTCTGT	alt_3516_fdr	13	32	16	13	23	22	23	15	26	17
TCGAACGCCAGTCACA	alt_3516_fdr	48	22	45	48	42	28	34	39	36	33
CCAATACTAAGTACTT	alt_3516_fdr	15	17	11	13	8	18	19	16	9	10
TCCGCATATCCCTGGT	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
TGCCTTTTACATATGG	alt_3516_fdr	57	60	77	75	52	49	73	54	63	54
GATCCTATGGACCCTG	alt_3516_fdr	20	18	25	30	24	18	14	30	16	20
ATATGCTTGTCATCAA	alt_3516_fdr	40	42	40	29	24	43	44	22	38	22
TCCATGTATCCCTTTT	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGCATACGTGTTG	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTAAACGGGGAAT	alt_3516_fdr	76	61	82	65	53	68	53	82	44	74
ATCATCCCGATCATTT	alt_3516_fdr	231	182	314	260	207	255	185	245	185	196
AAAGCTCTTTTTGAGC	alt_3516_fdr	109	100	115	137	102	85	119	109	100	105
TTTTCCTTTGTCATGT	alt_3516_fdr	6	4	6	4	4	2	7	1	3	1
CGCACCCTACATGGGA	alt_3516_fdr	97	36	104	117	49	70	66	76	49	98
GGTCCAGTTTACCTCC	alt_3516_fdr	6	0	6	6	6	6	3	5	5	6
TTTCTGTTAACTGGAC	alt_3516_fdr	16	29	17	15	35	13	31	25	49	17
TCAGTGGTTACTTTTT	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
TGCATTGTCCGTACAA	alt_3516_fdr	37	27	51	34	22	31	36	28	49	23
CGGATGCCCTAAGCCC	alt_3516_fdr	59	45	64	36	29	39	40	38	39	38
AGTGTCCGTTTAACAC	alt_3516_fdr	24	13	24	19	13	18	20	11	23	27
ACCATTCCCAATCGTT	alt_3516_fdr	82	108	92	96	100	53	103	57	141	83
GCCATGGTTTTGGCCC	alt_3516_fdr	28	30	36	39	29	27	25	28	29	32
GCCCTACCGGAGCTAG	alt_3516_fdr	140	96	180	169	124	125	113	161	104	137
TTGTTTTAGCTTGCAC	alt_3516_fdr	47	33	31	37	27	27	29	35	31	38
TCAGTCTGCACGTTAT	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCATCGGGGCAGA	alt_3516_fdr	70	45	75	73	53	59	57	79	59	56
ATATTAGTCTTGAACT	alt_3516_fdr	13	11	26	12	6	15	20	11	6	17
CGTTAAATGGTTATTA	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
ATTTGTGTGAAGTCAA	alt_3516_fdr	48	54	54	61	73	41	71	49	61	34
GGGACACATAGTTTGC	alt_3516_fdr	39	21	34	38	25	38	29	37	34	26
CTTCATTCAAACTCAT	alt_3516_fdr	59	53	71	42	40	57	53	60	56	57
GGATTATAGACCTGCA	alt_3516_fdr	28	14	35	32	21	20	26	22	22	27
CCAGTGATAATCACAG	alt_3516_fdr	76	79	110	71	87	84	89	78	99	61
TAATGTTTTAGTTTTA	alt_3516_fdr	48	39	81	41	37	53	26	36	31	56
GGACTACGTCGCGCGG	alt_3516_fdr	41	23	46	42	39	42	33	33	49	41
TTCTTCGCAGACCTAT	alt_3516_fdr	12	13	10	14	11	9	13	7	16	4
CGTACTTGCTTCCTCT	alt_3516_fdr	126	86	149	106	74	101	67	116	85	96
TGGCTCTTTAGTTGCC	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
TATGGTTACGAGCTCT	alt_3516_fdr	47	40	63	39	41	68	41	54	32	52
TAGACAAATATCTTTT	alt_3516_fdr	32	40	36	42	21	35	26	22	17	29
ATTCGTAGGGGGGGGA	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
CTGTGTGGAGGCCTAA	alt_3516_fdr	0	0	0	0	0	0	0	0	0	0
GGACGATATCTTGTCT	alt_3516_fdr	8	2	4	6	6	7	3	5	4	10
CGTGCTGGATTTACGC	alt_3516_fdr	18	12	23	34	14	25	13	23	13	27
CATGATGTTGATCAGG	alt_3516_fdr	50	29	51	49	36	40	41	59	38	42
CGTTGCTCCGAGTTTT	alt_3516_fdr	35	34	64	56	34	59	39	61	46	59
CACATCTCTCGAGATA	alt_3516_fdr	4	9	11	5	14	7	10	6	16	7
TACAGCCAGATGACCT	alt_3516_fdr	27	30	30	23	37	23	28	22	24	21
CCCTCTCGCCGACGCT	alt_3516_fdr	3	4	5	5	8	8	6	8	3	2
TTGCTTTGGATAATCA	alt_3516_fdr	57	26	48	44	32	28	33	44	45	46
CCTATGGAAATGAGTT	alt_3516_fdr	15	10	15	18	8	17	13	11	20	15
AAAACGCTTGCTTATG	alt_3516_fdr	190	176	220	233	191	185	197	197	186	167
TGTTGCGGATACCACG	alt_3516_fdr	59	29	72	61	36	66	46	56	55	64
GATCTTCCGCAATCGA	alt_3516_fdr	24	14	14	21	22	32	14	16	18	24
GTCGCTTAGTATAGTT	alt_3516_fdr	11	12	14	14	21	12	9	7	12	16
CTTTTCGCCTGTCACT	alt_3516_fdr	69	84	84	50	70	77	65	67	76	48
CGTACCAACTATCTTT	alt_5910_new	2	2	1	6	3	0	3	2	2	2
TCCCCTGTTTACGCAA	alt_5910_new	4	32	18	9	19	15	26	8	24	4
TTTTCGGGCCGCACAT	alt_5910_new	0	0	0	0	0	0	0	0	0	0
CGCACATGCACCTGGA	alt_5910_new	93	122	100	78	141	71	136	67	142	88
GAGCTAACGGCCGAAT	alt_5910_new	16	23	15	11	20	18	19	4	15	20
CGTAGGAAATATCTCA	alt_5910_new	49	51	50	51	63	45	61	50	64	38
GGGTCAGTTGGTCGGT	alt_5910_new	48	53	72	42	75	46	49	39	82	38
AATTTCATCTTCGAGC	ref_5910_new	133	207	169	154	161	129	169	131	183	123
TTAAGGCGCGAGTCCC	alt_5910_new	46	57	69	53	77	64	69	52	73	63
GTTCAATAACACTGTT	alt_5910_new	6	7	10	11	13	9	10	7	8	5
GATATTGGTTCTTTCA	alt_5910_new	26	58	39	44	34	33	57	26	43	31
CTTCTGTTTTCTAACA	alt_5910_new	59	97	57	47	74	66	73	55	95	44
CGTGCTGACTTCCACG	alt_5910_new	4	14	17	9	11	8	12	9	13	12
CAACATTTTGGATTGA	alt_5910_new	18	23	29	25	26	18	31	20	27	13
CACGCCCTGGGGCGTT	alt_5910_new	27	26	25	25	36	16	35	8	32	21
TTGTGCGTAGCTAGGT	alt_5910_new	0	0	0	0	0	0	0	0	0	0
CCAAATGTGCCAGGGT	alt_5910_new	0	1	1	0	3	2	9	1	4	1
TCGATATAGGATATCC	alt_5910_new	3	7	8	8	6	7	14	5	15	1
TGACTGTCAATGTCAG	alt_5910_new	8	15	10	6	8	0	12	9	7	5
ATGGGCGGTTAGCGAA	alt_5910_new	0	0	0	0	0	0	0	0	0	0
CGCGGGCGGTTTACTC	alt_5910_new	63	94	93	71	71	72	103	58	84	64
AATTTCATTAGCACGC	alt_5910_new	44	62	56	35	54	53	58	38	70	42
CAGGTACGGCAGACCT	alt_5910_new	0	0	0	0	0	0	0	0	0	0
GGCTATCAAATGGCCT	alt_5910_new	16	33	31	23	33	23	31	27	38	19
TTTTTCTCAGTAGGAC	alt_5910_new	92	86	82	86	91	70	84	56	76	65
TTGTTGTCAACTCTTC	alt_5910_new	29	76	48	40	81	49	82	41	79	37
AACATGTGGTACCTCC	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GCCACGTTTGCATCCT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TCTTGAAGGGATATGT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TCTATTATTTTCTATT	ref_587_missing	41	52	42	33	52	36	54	38	47	24
CATATCGTCTTGGTAG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
AACCATCTTGTGTTCT	ref_587_missing	8	11	8	16	3	5	6	4	9	9
GGGTAGTGTTCTACCC	ref_587_missing	2	1	0	0	0	0	0	0	0	1
ACCTCACCGCGCGCTT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TACATTGTCGCTAAAG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TCGGCTGGATACATGT	ref_587_missing	16	24	20	17	21	17	21	12	17	14
CCACCTATGTACGACC	ref_587_missing	27	44	28	19	35	22	48	21	40	13
AATGGGTCCAACTTCC	ref_587_missing	7	37	9	17	22	16	29	16	30	21
TAGATTGCGTCAAGAT	ref_587_missing	21	21	14	11	28	13	25	13	22	18
CCGCATAGCTTGCGTT	ref_587_missing	2	4	1	2	5	4	1	3	7	2
TTTCCTGATGCCACTG	ref_587_missing	4	12	9	9	10	9	11	8	17	10
ATCTTTGTACCCAGCG	ref_587_missing	4	10	11	13	13	9	12	6	11	11
ATGGCGCATTACGCGG	ref_587_missing	17	29	19	17	23	25	27	18	38	27
CCTTGGGGACTGCGGC	ref_587_missing	0	0	0	0	0	0	0	0	0	0
CGGGGTTACTTTCGTT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
CATAGAGCAATTTAGA	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TAATCCAGTTTTTAGT	ref_587_missing	3	1	1	1	2	5	2	1	3	0
CAGTTCGATAGTTCAG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
ATTGGCATGTCCTTAA	ref_587_missing	12	14	10	13	11	5	6	14	17	10
TTCGGCCTTCAGCGTC	ref_587_missing	0	1	0	0	0	0	2	0	1	0
CACGCGACGTGGAACC	ref_587_missing	1	0	0	1	0	0	0	0	0	0
AGTTAACCTCTACACA	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TTCCCGCGGGAGGGCC	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GCGTATGCGTTTTAAT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TTGGGATCTGGTTTTC	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GTGTCGAATACTCCCT	ref_587_missing	10	8	6	2	16	2	11	6	8	4
ACCTCTGAAATCGTAC	ref_587_missing	6	20	9	7	28	3	36	4	31	6
CAGGAATCGATCGGCA	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TGTTGACTCACTTCTT	ref_587_missing	0	4	7	0	4	4	3	3	7	2
ACCGTCGCTGCTCGCC	ref_587_missing	2	8	9	6	1	4	5	3	8	2
GAAGTTGAACCCGGTG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GCTATGGGCCAGAATT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GGATGATATACTGTAT	ref_587_missing	3	7	5	6	8	4	8	5	4	4
TGGCCGGATTATTTAA	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GGATTTCACTGCTCGC	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TTCGAAGAGTTGTCGG	ref_587_missing	5	2	1	1	6	5	8	3	5	3
GGTTCAATTCTTCTTC	ref_587_missing	12	19	11	12	22	17	25	13	35	12
CGGCCATCGATATGCT	ref_587_missing	7	21	14	13	28	17	27	12	26	15
GTCTAAGGGTGTCGTG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GCGTCCGGTGTCTTGG	ref_587_missing	7	15	12	9	20	7	13	14	17	10
GGATTTTCCCGAAACA	ref_587_missing	25	32	23	28	33	32	52	21	34	23
TTGTTAAGACGGGCGG	ref_587_missing	4	3	3	5	1	1	4	4	7	3
CCGTTCGTATGACTCT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
CTTAATTTATGTGAAC	ref_587_missing	4	9	7	6	7	12	8	9	14	5
TTACACCGGGACCCCC	ref_587_missing	15	31	11	17	19	11	35	10	31	9
CTGTTGTAAATATGTG	ref_587_missing	9	29	18	10	40	13	23	13	24	11
GTGGCACACGGTCCTT	ref_587_missing	17	23	18	13	26	13	20	14	27	18
CTCACATGTAATAGCA	ref_587_missing	27	35	22	17	30	18	32	15	44	18
GTCGTGCTATGCACAT	ref_587_missing	28	52	39	39	54	22	48	30	53	27
ACGAGCGCTGACGCAT	ref_587_missing	16	10	29	10	21	13	22	16	17	11
ACCTTTGTTGGGATTT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
CACTCCAATTGCGCGG	ref_587_missing	7	16	6	6	26	4	19	6	17	10
GACGATCTTCGAGATC	ref_587_missing	6	6	2	5	12	6	8	7	9	6
TTGCATTCCATTAAAT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TCAGCTGAGTGTTCCC	ref_587_missing	6	19	11	4	8	12	19	9	22	7
AACGGTACTCTTCTGT	ref_587_missing	32	38	33	24	37	35	46	20	60	17
GTCTCAAACGCATACT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GTGTAGTGTGTCACTG	ref_587_missing	12	23	9	17	20	17	30	8	21	8
GGGTCTAAGGCTAGGC	ref_587_missing	0	0	0	0	0	0	0	0	0	0
CAGTACGCAGCTCTTT	ref_587_missing	12	10	17	7	12	3	15	3	9	17
AACCGTTGAGCATACG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
AAGTACTGACATCACT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GGGGGTCTATGAATTA	ref_587_missing	0	0	0	0	0	0	0	0	0	0
ACTAGCGTAACCGGCG	ref_587_missing	8	10	16	10	16	5	14	6	11	14
TTGCGACGACTCGAAT	ref_587_missing	6	9	8	12	16	5	21	9	17	1
AGGCTTCCTTCTAAGA	ref_587_missing	5	13	15	9	13	6	12	2	13	7
GATGCCGCACTGAATT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
GTGCGTACTTTTCTGC	ref_587_missing	2	5	7	5	10	8	14	3	8	3
GCTCATCCTGGCGCTG	ref_587_missing	0	2	2	0	8	2	2	2	1	0
TGCACTCGCTCCTAGC	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TCATATTTGGATACTT	ref_587_missing	11	25	19	11	45	19	33	13	34	10
CAGTAGCTTTGGTTTG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTTCAATAAGAT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TGATCACACTTAGGAG	ref_587_missing	0	0	0	0	0	0	0	0	0	0
CGGTTAGGTATAGTCA	ref_587_missing	1	0	0	1	3	1	2	0	3	0
TGGCGGAGACTGAGAT	ref_587_missing	0	0	0	0	0	0	0	0	0	0
TAAAGTCCCGGGGCCG	ref_587_missing	64	102	110	74	123	73	134	72	114	90
TCTCTATTGTTCAAGT	ref_587_missing	16	22	20	15	16	20	20	13	33	9
CACTTCTATGTAACGC	alt_2278_negative	8	10	4	7	4	4	7	5	5	4
CACTCTCGGGAAGTCT	alt_2278_negative	42	64	59	55	68	46	55	53	83	45
GCCCTGGTCCCATCGT	alt_2278_negative	13	10	11	8	14	11	19	10	14	8
CTTACCGTTATTGTTC	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
TTGTGTTCTGATTCTG	alt_2278_negative	4	8	8	8	9	4	12	2	10	7
GTTTAGGATGCCGTTT	alt_2278_negative	19	34	27	26	20	23	43	19	49	20
TTACCCCACTAACTTA	alt_2278_negative	5	15	9	7	4	12	6	1	11	4
GCGGCTCTAGAAAGTC	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
TGTGGTAAGAATAATA	alt_2278_negative	56	84	56	48	87	51	88	54	86	45
GGGTTCGAGATTAACT	alt_2278_negative	84	153	83	69	116	84	128	68	123	73
GCCGTGGATGAAAGGC	alt_2278_negative	120	190	134	115	184	102	183	97	200	111
AAGGAAGATACAGCGG	alt_2278_negative	15	39	34	21	32	27	43	16	47	17
ATTAAGTCTCATGTAC	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
TCGCCGAAAGTTCCGA	alt_2278_negative	75	105	68	60	99	65	120	50	118	72
CGGGTAGCGTACGTTC	alt_2278_negative	32	65	37	42	59	36	62	29	64	32
TAGGGTAGAAATTTGG	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
GCTTACCTTATCCGAG	alt_2278_negative	3	14	2	3	8	1	4	1	7	1
GTCTTATAGGTTCTGT	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
GTGCAGCGTCATGTAC	alt_2278_negative	10	12	8	7	21	10	23	8	14	10
TGTGATAACAGTCCTC	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
GCTGTCTTGTTGCAGA	alt_2278_negative	25	61	50	22	58	38	69	28	74	28
GTATTGTGGTTACACC	alt_2278_negative	41	75	59	26	71	44	72	42	92	39
AGCTGGCGGGCATATC	alt_2278_negative	146	208	181	146	222	156	216	128	241	119
CTTGCTTCGGGGTCTG	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
CTTGCGACCTGTTCAC	alt_2278_negative	10	19	8	13	24	17	26	14	23	13
TTCTTCGATTACCACG	alt_2278_negative	14	24	16	20	21	11	21	10	35	18
TTTCCTTTCGTTGTCC	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
CTTCATAAAGGCTTGC	alt_2278_negative	40	55	47	38	52	42	58	50	58	41
CATGATTCACTTGGAC	alt_2278_negative	12	20	26	11	29	19	25	12	38	16
AGCTCATAGATGTTTG	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
AAATCGACTCTGGTAT	alt_2278_negative	1	0	0	1	0	0	0	0	0	1
ATCTCCGGCCCAATCA	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
CGTCCTTTCCGTCTAT	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
TAATACGACGCTCCTG	alt_2278_negative	10	9	5	3	11	7	19	7	8	5
GGTTGTAACAACGTCG	alt_2278_negative	3	4	4	0	11	3	7	2	4	4
ACCAGGTCATTCCCAT	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
CAACACCGAGAACGTG	alt_2278_negative	33	66	47	49	58	29	67	29	52	57
TCGAGGCGTATGAGAC	alt_2278_negative	13	26	21	17	26	22	33	13	30	12
TCATGTTGTTCTTTGG	alt_2278_negative	22	32	33	27	41	18	47	21	46	25
TTCCCCGCGCGTGTTT	alt_2278_negative	11	22	10	16	17	6	19	21	22	8
GGTTGTAATGCGTTTG	alt_2278_negative	97	170	121	101	247	99	177	98	204	90
GGAATGGCAAATACCG	alt_2278_negative	76	103	93	65	136	80	125	94	101	74
TCGGTCATCGTCTGAC	alt_2278_negative	8	5	12	4	24	6	10	5	12	3
AGGCAGGGTCCCATTG	alt_2278_negative	30	50	28	34	35	26	48	21	52	36
TCACTGTGTTCATTTC	alt_2278_negative	13	26	21	20	29	15	20	19	21	12
GTTGGTTCCTTCCCAA	alt_2278_negative	18	44	29	36	36	39	41	23	46	18
GTTTCATCTGCGGTTA	alt_2278_negative	0	0	0	0	0	0	0	0	0	0
CACAAGACTCGGTGGC	alt_2278_negative	24	28	20	28	31	27	33	18	33	25
GTTATTATTGCATATC	alt_2278_negative	29	33	17	10	29	14	24	12	20	12
GGGCGTGCTGGTGAAC	ref_4642_RC	12	14	21	10	14	15	18	13	24	11
CTTATCTTCGAGATTA	ref_4642_RC	157	114	157	137	150	114	140	130	151	124
CTTTCGTGTTAGGGTC	ref_4642_RC	31	31	30	32	36	28	41	28	35	18
GTGCTTTTCACTATCA	ref_4642_RC	15	20	13	16	16	13	17	10	22	10
CCTAATGAAACGGTGG	ref_4642_RC	9	21	18	9	22	16	28	16	14	17
CGTGTTCTTTGTCGCC	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TTTTGCATTCCTCAGT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
CTCTTAACCTAAAGGT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TATCACTGTGGTGCTA	ref_4642_RC	11	16	25	24	21	16	18	17	19	19
AGCCTATAGGCTGCGG	ref_4642_RC	100	183	140	114	158	141	173	75	180	101
GTCTTGTTCATCATCT	ref_4642_RC	10	25	18	27	30	16	53	22	33	24
TTTTATGATGTCATAG	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
ATCAATTTAACTAAGT	ref_4642_RC	41	26	28	19	30	33	29	21	37	19
TGTTTCTAGCTTAACT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
ATCTCGGCCATTCTCA	ref_4642_RC	47	78	58	61	74	35	55	48	80	43
ATCGAGTCTTGTTGCT	ref_4642_RC	25	11	28	21	12	16	15	29	12	28
CACTTTTCGTATTGAC	ref_4642_RC	71	83	83	72	88	64	91	52	86	63
TTCCTTGGCACCTCCT	ref_4642_RC	43	28	46	39	49	47	56	21	55	41
GGAGACGCCTCCGTAT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TTGTTTGAGTCTTCTA	ref_4642_RC	5	6	11	11	11	9	10	10	10	7
CTAGAGTAAGGTGTCT	ref_4642_RC	65	90	64	60	77	56	94	57	80	48
GTTACGTGGCGTTTTT	ref_4642_RC	19	12	18	23	11	13	15	13	10	15
GCCAGGTTTGGAGTTA	ref_4642_RC	39	52	59	59	50	30	72	42	51	34
AGACAAGACATGGATC	ref_4642_RC	106	149	142	128	117	120	144	104	162	109
TGCTCCCGCCACACTC	ref_4642_RC	55	44	57	63	65	48	60	44	54	44
GGGTTTCGCCGGCTGC	ref_4642_RC	14	8	16	8	9	11	8	12	18	9
GCACAGGGATCGCCGT	ref_4642_RC	4	4	7	4	8	4	9	3	7	2
GTCACCTTCTCACGTT	ref_4642_RC	2	0	4	2	5	4	1	1	1	1
CAGGGAGCTCTCAAAT	ref_4642_RC	116	154	145	107	177	123	169	121	182	111
GCGAGCGGAACGTTTA	ref_4642_RC	12	10	17	10	10	6	11	9	8	9
TTGTTTAAATCCTTGG	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TGACACTGGTGCCTAT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
ATGCGGTGCAACTTGG	ref_4642_RC	15	38	50	31	22	27	29	19	32	18
TTCTGTTAGTCGATCA	ref_4642_RC	6	26	8	5	15	8	13	13	10	8
TTTTTTAATTTAACTC	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
CTCAACTTCTAGCCCA	ref_4642_RC	18	23	20	21	27	23	22	25	30	15
GGTCTTGCCGTGCTTC	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
ATTGGTGCTTTTCCCC	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
AGAAGTTTCTTGCATC	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
AAATTTCGGGATAGTT	ref_4642_RC	7	7	4	6	6	6	3	2	5	3
CACATGGACACATTCA	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
GTTCTCTTATCGTATA	ref_4642_RC	53	54	53	60	56	44	70	51	50	38
CCATTGCAGTTATTCC	ref_4642_RC	3	11	7	3	1	6	7	6	8	6
ACCTTGTCTGGTTAGC	ref_4642_RC	0	1	0	1	3	1	2	2	1	1
TTTTCCATAATAGTGT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TATGGTGGCTAGCGCT	ref_4642_RC	13	7	10	10	7	9	6	15	7	7
CGTTGCTCCCGTAGCG	ref_4642_RC	38	48	45	34	36	35	45	34	38	34
TAATATGCCAGCAATG	ref_4642_RC	57	62	61	49	30	42	52	45	50	47
ATTAAGCAGGTTTTAC	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
GTGTCCGTGCCCCTCA	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TGCCGTGTGAGAGTTT	ref_4642_RC	67	84	60	54	92	54	65	64	96	63
CCGCCGCGCGGGGCCG	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TATGAAGTCTCCAACT	ref_4642_RC	7	7	5	4	4	6	7	4	6	4
TGTTTTTTAGGCTTAT	ref_4642_RC	97	103	116	98	113	75	94	78	111	67
TTTGGTACATGTTTGG	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TAATACTACCATCGCT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
CCACTTAATGTTTGCT	ref_4642_RC	17	24	15	15	16	14	25	16	19	12
ACCGCACGCCTTTGGT	ref_4642_RC	24	42	24	15	38	28	30	18	37	28
TCTTCTCGCCCGTCCT	ref_4642_RC	0	0	0	0	0	0	0	0	0	0
TTGAGTTGTCGCTGTG	ref_4642_RC	9	8	14	9	11	8	8	8	19	13
CGGAACTGTCTCGCCT	ref_4642_RC	21	23	23	32	30	15	24	10	27	18
TTCTTAGGCCCGTCGG	ref_4642_RC	30	35	41	28	52	30	37	46	28	26
CAAACTATTCCCGTCA	ref_4642_RC	34	36	38	34	47	36	40	32	33	25
TGATTTATGCACCACC	ref_4642_RC	159	183	211	183	191	192	191	148	204	150
CGATTAGGGCGAGATC	ref_4642_RC	42	76	60	62	66	39	81	43	92	67
GACCTCGGTTTATCCG	ref_2955_missing	4	5	7	2	4	7	3	7	6	3
CATGAGCTTTTCGAGT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CCTCGTCTCTTCGCAC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TAACGAATTCGTATAG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
GTTGGCTTGCTCCGCG	ref_2955_missing	1	5	0	0	1	0	1	1	1	0
GAGAAGTTCTGTGTGC	ref_2955_missing	18	14	20	14	17	17	18	23	25	15
TGGACCCTTCGGGCGG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
AGATGGGCTGCCCTCG	ref_2955_missing	6	16	18	9	5	5	9	8	17	10
GCAGGTTATTCCAGCG	ref_2955_missing	11	13	15	18	6	8	21	16	17	12
ACTTTTCCAACACGGT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CATATTGCTCATTCAA	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TATCAATATCCTTTCA	ref_2955_missing	65	38	48	48	36	51	35	47	47	29
CGGCTGCACGCATTTC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CGATTTCATGAAAATG	ref_2955_missing	14	15	13	12	7	13	16	19	16	12
TAGGCCGGCATAGAGG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TAGTCGCGGGTTTCTG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
AAGGGTAGGCCTAAGA	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CTTTATTCGGGTTGTC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TCTGTCAGTCTGCGGA	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CGGTGCAACATTTCCG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TTTGGTGGCACATTAG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TGCACAAGGCTTACCT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
ATGGTTTGAAATTTTT	ref_2955_missing	80	78	84	83	65	72	83	67	79	83
GTTCTGATGAATCTGG	ref_2955_missing	17	11	13	28	10	18	15	10	18	11
ACGGCATGCATTCTAC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
GTCATCTTTTCGTCTG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
AATTACGCTTCCGCGC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CTGGTAAGCTAAGTGG	ref_2955_missing	19	27	36	29	24	28	25	38	19	22
TACCCCGCATCTTAAC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TGTGTTTGCTCTATAG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TAGCGCTCCTAGTAAG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
AGGCCTTGCGCGAATG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
ATGAGTCTCACGGGCC	ref_2955_missing	15	12	27	15	21	13	20	20	15	13
GCCCTCGTCATTGGTA	ref_2955_missing	20	13	27	18	28	15	33	32	21	12
TCAAAATCCTTACCTA	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
ACGTTCTTAGGCAAAG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TATTTTTCCCGAATCC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
ATCTAGCCACTGTTAG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CTTTTTAAATGGCCAT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TTTATACGAGACATTC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTGAGGATTTGT	ref_2955_missing	1	3	3	0	2	1	4	1	1	0
TAGTCACCCACATTTA	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CTACCGGGTCACTATC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TTTTTCAGCCGAATAT	ref_2955_missing	14	8	11	8	8	10	12	4	10	10
GATAACGCCCAAAGTG	ref_2955_missing	3	4	5	3	3	5	10	4	5	6
GTTGTGGCAGCTAGTA	ref_2955_missing	1	8	3	7	2	6	5	5	9	2
GTACTTTTACATGTCT	ref_2955_missing	3	4	6	5	10	4	8	3	3	1
CTTAGCTTATTCGTGG	ref_2955_missing	6	9	6	6	15	3	6	4	7	10
ACTTTGTAGATGTTTT	ref_2955_missing	21	23	11	13	17	18	9	17	13	12
CTATTCAGGACTGAAT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
GTCCTAGTGAATGCGC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
ACGGTCGGTTATCGCC	ref_2955_missing	10	10	5	4	3	3	7	4	7	6
TGATTGCGGCGGTGCG	ref_2955_missing	17	11	20	19	17	11	18	13	20	17
AGCCGCTGGGGAGGTA	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
ATGGTCTTTACTGCGA	ref_2955_missing	19	8	15	14	12	13	12	12	11	9
TTCCTTGGGTTCTCTT	ref_2955_missing	3	3	3	1	4	3	3	1	3	1
TTCTAGGATTCAATGC	ref_2955_missing	16	9	14	19	19	17	13	11	10	17
CTTCTCGTGGTTCTTT	ref_2955_missing	8	8	8	5	5	9	6	6	4	6
TATTTTTACTCTTCTC	ref_2955_missing	10	8	17	6	10	9	9	12	12	7
CGAGTATTATGTATCG	ref_2955_missing	6	11	12	10	4	8	4	6	10	5
TGTATAACCTTTTCTT	ref_2955_missing	20	12	11	26	9	18	9	13	14	13
CGAGCAATTCGCTGTT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CGATCAGTGGGATCTC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CCCCCTGTTATTCAAG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TGGCCGTCGAGTTCTT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TGGCGTCCGTGGCTCT	ref_2955_missing	26	15	34	31	18	30	23	24	24	17
TTGGCTATCTCTTGAC	ref_2955_missing	4	5	4	4	5	3	3	2	3	1
GGTTAAGAGTTGCCTG	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CTCTGACGCTAAGACC	ref_2955_missing	5	3	5	8	3	3	4	1	6	6
TTATTGTCTCCGTCAA	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
GCGCAATATACAGCGG	ref_2955_missing	6	2	18	3	9	4	7	6	6	7
GAGGCGTTCCCCTTTT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
GTGCACGACGCAGATC	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTTCTGTTGGCT	ref_2955_missing	0	0	0	0	0	0	0	0	0	0
TACTGGTATTTCCTCA	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
GTACTTGACCACACTG	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
CCTGATGTGACTCATG	alt_5261_RC	58	45	55	61	41	54	53	47	56	50
CTCTAGCCGCAGTTTC	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
CTGTATGCCTGGTGTA	alt_5261_RC	5	7	14	4	6	3	4	4	5	3
AGTAACCTGATCTAGG	alt_5261_RC	76	57	65	59	108	65	86	57	74	59
GTGCGTTGCGCCGTCT	alt_5261_RC	18	21	21	27	22	16	18	30	17	18
TATCGAATGTTCCCGG	alt_5261_RC	28	29	39	30	31	27	35	36	37	35
TGGATTATTATTGCAG	alt_5261_RC	13	17	20	10	16	15	25	14	27	8
CTGAGGTTCTACCAAC	alt_5261_RC	14	7	11	11	10	9	4	10	4	12
CTTGGATTGCGTTTAA	alt_5261_RC	4	4	11	4	12	16	13	5	8	5
GTGGTTCAGACCAAAC	alt_5261_RC	25	20	28	12	11	12	14	13	20	19
GTGGACAAGGGAAACT	alt_5261_RC	68	65	103	79	76	94	85	96	72	92
AAGGACCAAGGTCTTC	alt_5261_RC	38	32	48	30	26	24	36	36	38	20
TACAAGCGGCGGCAAC	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
TCACCTAAGTGTATGA	alt_5261_RC	12	7	12	18	11	8	15	5	16	9
TCTTGGGTTGTGCAGG	alt_5261_RC	201	193	244	172	206	186	220	188	189	180
TTAACATCTGTGAACG	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
AGGTTTAGATATTATT	alt_5261_RC	273	237	297	263	226	249	269	228	274	218
ATATATTAACTTGTCT	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
TGCTCCAACAGGAGTT	alt_5261_RC	7	12	6	3	2	10	4	2	7	3
TTGCCTTCACATCCCG	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
ACTAGGCGGTCTCCAA	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
GCCGTGCAATCTGGGT	alt_5261_RC	27	26	27	31	23	23	38	24	26	22
CATCGTCGGTCATTCC	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
GCGGCCCTTTTGGTCG	alt_5261_RC	40	46	46	33	35	33	34	29	35	31
TAGTCTAGCTCTATGA	alt_5261_RC	64	86	82	80	83	75	78	79	87	72
ATGGTTGCACTTCCGG	alt_5261_RC	16	18	18	24	20	12	14	18	13	15
GGAAGGCAATGCTATA	alt_5261_RC	282	274	346	297	277	259	296	293	278	229
GCCTCTCGGGTCTTCT	alt_5261_RC	177	117	193	207	116	184	161	172	128	166
TTGTGCGGGTCATATT	alt_5261_RC	89	68	107	89	96	94	95	87	90	81
GTTTGTCTGAATATAA	alt_5261_RC	0	0	0	0	0	0	0	0	0	0
ACCCTTGGGCAGACCA	alt_5261_RC	37	28	38	26	31	33	20	19	27	30
AGGCATCAGGCATATT	alt_5261_RC	114	103	119	104	103	87	109	111	97	117
TACGGTAGCCTTAATG	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
TGACGGTGTTCGTTGT	ref_2529_negative	10	51	17	21	39	11	45	13	53	19
GGCTAGTTTCTGGTCT	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
CATAAAGCTGTGGACC	ref_2529_negative	46	121	65	40	129	35	122	41	155	53
TTTCCCGCCGTCATTA	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
ATTATCATAATGGTCT	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
TCTCGAAGATCCAGTT	ref_2529_negative	29	39	19	27	37	18	41	18	47	20
AGAACAGGGTTCAAGA	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
AGCGACTCACCATTCA	ref_2529_negative	33	83	32	33	140	21	101	36	109	31
CAAAGAAGTATGTGCA	ref_2529_negative	5	16	12	9	16	4	26	4	16	8
GCACTTTGTGCTATAT	ref_2529_negative	17	46	28	15	64	18	76	11	62	16
TCCTGTGAATTAACAG	ref_2529_negative	18	55	23	16	78	15	59	13	52	13
GGATAGTCTCCCAGTC	ref_2529_negative	36	121	40	38	134	26	148	37	127	33
ACTATCTGTTGCCTAT	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
TGTCTGTCTGTTGTAG	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
CCGTGCACCAAACTAA	ref_2529_negative	42	124	49	26	142	40	146	43	164	37
GGTAACGATTAAATGG	ref_2529_negative	74	153	109	75	148	80	175	82	165	85
CTTGTTGAATAGTATC	ref_2529_negative	5	19	7	10	20	7	16	3	21	8
TATGAGAGTTTTCTCT	ref_2529_negative	10	37	19	15	44	12	36	10	29	12
ACTTAGTTAAGCCTGT	ref_2529_negative	14	25	14	14	25	6	38	9	34	9
TCTTGAAGTTTGGTGT	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
GTATGCGGCTGCCGAT	ref_2529_negative	13	29	12	11	25	11	19	7	20	6
ACTTCGGTTACTTGCT	ref_2529_negative	5	7	3	4	18	5	12	6	8	2
TTATGTCATAGCCCTG	ref_2529_negative	69	131	82	72	167	53	125	44	166	54
GGCATCTACAGCGATA	ref_2529_negative	15	46	20	18	27	22	41	22	38	15
GAAATGCGTTGTAGAA	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
CCTGGTATGTCGCATC	ref_2529_negative	0	12	4	1	11	1	19	2	18	0
CAGGGGAACTCTATGT	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
GACACTTAGCAGGTTA	ref_2529_negative	13	43	18	15	51	14	38	18	44	15
AGCGATGAAACATTGG	ref_2529_negative	61	145	72	52	125	56	120	46	144	54
ATGATGTGTAAGTAAT	ref_2529_negative	58	170	67	66	147	54	149	64	180	55
TCTATCAGTGGTCACG	ref_2529_negative	16	30	10	11	36	14	45	14	35	5
CATCCCTTAAGTTTCC	ref_2529_negative	27	65	24	27	55	17	45	19	67	19
TTTACATTGACTGCAG	ref_2529_negative	6	32	19	8	31	11	24	12	26	8
AGCCAGCCAGGAGCTA	ref_2529_negative	11	30	5	10	31	11	31	18	23	7
CGTTACGAGCCACAAT	ref_2529_negative	52	89	50	54	111	44	120	36	131	50
AATACATACAAACGCT	ref_2529_negative	153	369	184	132	294	177	333	120	380	145
TGTACAGCCTCCTTTG	ref_2529_negative	15	36	18	24	39	9	45	16	33	9
ACATCTTTACTCGAAT	ref_2529_negative	16	39	19	11	37	15	33	10	36	18
GATTTCAGTCACGTCC	ref_2529_negative	13	15	18	10	25	10	22	8	31	11
AATGTTATACGAGTAC	ref_2529_negative	1	7	5	4	8	7	7	1	7	7
GGAAGCCGTTTAACTT	ref_2529_negative	12	29	22	14	47	18	38	5	44	10
ATCGTATTTCTTTAGG	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
CTAGGACGCGCTAAGT	ref_2529_negative	20	38	13	13	36	11	32	14	36	14
ATTTTGTAAACGATTC	ref_2529_negative	68	153	89	61	124	73	155	54	146	53
GCTCTAGGTTCTGTTC	ref_2529_negative	0	0	0	0	0	0	0	0	0	0
CGGGCGCTCTACGGGA	ref_2529_negative	2	4	2	5	5	2	3	1	3	0
TGGGGTGCTCTGATGC	ref_2529_negative	7	7	4	4	12	2	10	3	9	4
CCATATTAATCGTTTG	ref_2529_negative	37	95	40	39	100	31	95	40	83	27
CGAGTGCTACCGGAAA	alt_1598_negative	14	18	17	18	27	6	34	14	21	22
GCTCATATAGCGAGCG	alt_1598_negative	91	183	113	100	205	102	187	91	194	91
TGTAGGTAAGTTGGCG	alt_1598_negative	57	65	85	65	61	66	69	59	80	61
TAGCTAGTATTGTATT	alt_1598_negative	4	7	13	4	11	6	8	6	11	9
AAACAAAAACAAAGAC	alt_1598_negative	18	41	30	22	30	20	26	15	30	20
TTGGAATGTAGCCTGG	alt_1598_negative	21	20	9	13	26	12	30	17	17	11
CCGACTTCTTTTCCGA	alt_1598_negative	53	71	48	34	49	43	48	42	54	30
TGATTCACACATTTCG	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
TCAAATTCGGTAAGTT	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
TTCGGCCTGGTACATT	alt_1598_negative	122	197	133	101	174	108	194	117	182	109
TTTATTAGTAGGTTTG	alt_1598_negative	57	84	74	42	101	55	82	54	97	34
GCATGATCCCTCCCGC	alt_1598_negative	9	11	15	11	24	12	21	11	40	11
TGTCAATTGAATCTAT	alt_1598_negative	8	12	5	5	16	4	8	6	4	4
TAGCGCGTTACACCGT	alt_1598_negative	2	21	4	8	12	12	16	3	13	5
AACTGTATAACAGAGC	alt_1598_negative	5	4	8	6	10	3	11	5	3	3
ATTTGCTTCATAATCA	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
AGTCAGCCATCGTGCG	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
CAGCTCGCGTCTTAGT	alt_1598_negative	9	14	9	12	26	7	23	6	24	3
CTTATGCACTCGATAT	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
ATATTCTGTGCGATAG	alt_1598_negative	27	43	48	37	49	23	67	31	46	36
GTAGCCTTCAGGGAGT	alt_1598_negative	58	100	73	60	110	69	87	51	116	53
ATAATTGTAAGTATCC	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
AGATGGTGATACAGTA	alt_1598_negative	21	34	34	31	57	31	51	26	51	28
CTTGTGGAAGACTGTG	alt_1598_negative	14	22	22	12	26	9	25	9	28	19
TGCTGATTCCCTCGAG	alt_1598_negative	6	3	11	7	16	9	10	10	7	7
CATGCTGACCTCAAAT	alt_1598_negative	9	16	16	22	10	14	20	22	29	7
GTCCAGGTATGTTAAC	alt_1598_negative	4	8	7	2	6	1	10	0	9	8
ATCTCGTCTCTACTGG	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
TAGTCGCGACGCTTTA	alt_1598_negative	56	70	74	51	51	40	72	46	78	41
TGCTCTTAACCAAAAA	alt_1598_negative	17	33	22	25	39	16	41	19	47	18
CTCCTAATAAGCAAGT	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
ACTAGTGTCACGTTTC	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
TCCGGAGGCATTCTCG	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
TGCGTGGCTTCATCGC	alt_1598_negative	72	130	111	97	140	79	133	82	156	66
TCACTTACAGTACCGT	alt_1598_negative	16	36	19	19	50	24	32	20	40	19
TCTCCTCAGTTTTTAT	alt_1598_negative	14	23	23	13	23	16	25	16	29	10
CGGCAACACGCTGCTC	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
ACAGATTGGATATCTT	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
GCCAGTGTCTGTGGTT	alt_1598_negative	9	14	8	11	13	5	23	5	13	3
TATGGATCTTTATTCA	alt_1598_negative	30	43	28	27	39	20	47	28	48	28
CTTCCGATTTAGATAA	alt_1598_negative	11	19	12	6	16	12	15	8	18	9
AGTGAAATGGCTAATT	alt_1598_negative	12	22	15	10	20	13	24	7	26	7
CCTCGGATTGTAGAGT	alt_1598_negative	45	68	48	60	63	47	73	37	81	23
TAACCGACAGACCGAG	alt_1598_negative	31	52	34	26	40	29	53	23	54	34
TTCGACCCTATCGTCC	alt_1598_negative	36	72	41	42	76	30	64	47	80	33
CCACTGGCTCTTTGGT	alt_1598_negative	8	21	11	5	17	11	14	16	14	12
ATAAACGGTGATCTCA	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
TCCATTACTTGGAAAC	alt_1598_negative	28	39	38	45	51	24	47	27	52	18
GGCAAGTAATTTATAT	alt_1598_negative	18	41	33	18	30	21	30	13	22	19
CCACCCCCGTTGCGTC	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
CGGGGTGATTAGGAAT	alt_1598_negative	35	84	45	48	84	45	70	64	97	46
AGACCATAAGATCGCC	alt_1598_negative	105	131	91	72	136	74	136	57	127	81
CAGGGCTTGAGGGGGT	alt_1598_negative	6	22	16	10	23	7	20	8	24	17
CATTGTCAGCGAAGCA	alt_1598_negative	2	7	1	5	7	3	6	0	8	6
TGGTGGTGACCCCCGG	alt_1598_negative	20	20	26	17	31	11	29	16	34	21
TCGATACGGTGCTCTC	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
ATGTGAGGAATGCGTC	alt_1598_negative	4	12	10	8	10	2	9	4	16	5
ATGAAAATAAAGTATA	alt_1598_negative	1	4	5	3	5	2	10	3	4	2
GCGGACACCGCGGCCA	alt_1598_negative	40	47	46	26	47	28	58	35	33	25
CACATTCGTACTCATA	alt_1598_negative	27	58	41	25	56	24	60	23	55	32
CGTGGGCCTTTCTATT	alt_1598_negative	11	35	20	26	46	13	23	24	37	11
TCTTAGAGCGTGTGAG	alt_1598_negative	19	36	25	22	30	17	26	20	31	17
CCTACTGTAGTCCACA	alt_1598_negative	16	34	10	16	25	13	29	18	17	18
TGAAGAAATGTGGGCC	alt_1598_negative	55	89	87	64	93	80	103	46	106	64
ACCAGACAGTCTCTGC	alt_1598_negative	0	0	0	0	0	0	0	0	0	0
GCACTTCACATACATC	ref_1883_missing	53	95	76	77	109	68	119	46	108	56
ACGTTGATATTCCTCC	ref_1883_missing	52	65	37	46	78	23	77	44	89	40
GTACAAGACAAATCCC	ref_1883_missing	8	14	10	11	11	8	18	17	10	2
TTACCTGTATTTGGAC	ref_1883_missing	0	5	1	0	4	1	0	1	2	1
CACCTCGAGGTCTTTG	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
GCTACTCCCGAAATCA	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
TCTAGCGGTGGTTCGC	ref_1883_missing	17	39	15	26	47	20	40	16	42	20
CAGTCTCCAGAATCTT	ref_1883_missing	7	16	10	6	10	5	12	5	6	0
TCCTGGGATGTTCCTG	ref_1883_missing	29	66	35	31	57	30	69	44	53	37
TGGATACGCAAATCTT	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
CTTGATTACCAGCAGT	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
GACCGCATTTTTCTCA	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
CATGCATGGCCTGAGG	alt_1883_missing	40	128	54	44	113	27	92	33	137	38
ATTCCTTCTAAACTTA	ref_1883_missing	25	43	40	29	39	29	60	20	64	38
GATGCCACGGTGTCCT	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
GCAGCTTCGACCATCT	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
CCAACCAGGTCAGCTT	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
ACACTACGAAGTATAG	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
TAATTTAAGTATCTTC	ref_1883_missing	22	40	30	17	34	34	36	18	41	20
CAGTAATCCTCGTCAC	ref_1883_missing	6	18	9	8	22	12	21	9	23	8
AAGTCATAGCGGAACT	ref_1883_missing	30	54	32	36	43	42	52	32	68	24
TCCCGGACCCTGCCGT	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
AGTTAAAGCTTTCGTT	ref_1883_missing	27	49	41	21	52	40	55	33	69	28
CCTTATGATTGCCTGC	ref_1883_missing	2	4	2	2	4	2	3	2	1	0
ATAGGCCTTCTATCAT	ref_1883_missing	12	30	22	15	15	12	20	13	42	9
TTGTCTTGATCTGCGG	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
GACCCTATCTCTTCAC	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
GAATTGATCCGTTTGC	ref_1883_missing	24	34	32	26	49	16	40	27	46	18
AATTTTGTGGTTGCTT	ref_1883_missing	61	132	103	82	147	64	141	58	135	63
GACGTCCTCAGTCACG	ref_1883_missing	2	1	4	3	9	2	14	3	9	5
ATTCAACCTCTAGCCT	ref_1883_missing	3	11	8	9	11	3	9	7	10	5
TGTGGTTTTGTGAATT	alt_1883_missing	21	29	22	14	40	16	39	10	48	9
TCGTGGCTGCAATTTG	ref_1883_missing	23	51	34	21	41	13	46	19	36	25
GTTCTTACGAGAAGCA	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
AGTGTGTGATCCGGGA	ref_1883_missing	0	0	0	0	0	0	0	0	0	0
TTTACTTACTTCTTGT	ref_1883_missing	5	33	9	11	37	9	43	15	33	16
ACCACTAGGCAGGCTC	ref_5473_missing	7	6	10	9	12	6	11	14	12	5
TCCATTGGGAGTTTCT	alt_5268_upstream	27	19	13	22	16	18	18	13	26	14
TGGTTACCTCACTCCC	alt_5268_upstream	3	5	4	0	8	2	11	3	12	3
TCGCTGAGAGATCTCC	alt_5268_upstream	25	44	17	24	32	20	26	19	33	16
TAGCGGTAACCATTGT	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TCAGAACGGTGCGTTT	alt_5268_upstream	47	56	48	50	60	44	67	43	83	51
AACCCCCCAAACGTTA	alt_5268_upstream	30	45	49	42	47	43	36	32	60	26
CCAAGGATGTTGCGCT	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TCGAATTCTTAACTTT	alt_5268_upstream	15	18	15	9	10	7	15	10	10	9
GTATAACATGAATGAT	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
CATATTCTACGTTTGC	alt_5268_upstream	29	29	27	23	27	29	36	28	43	22
TCCCTCGTACTTAGTT	alt_5268_upstream	1	15	4	4	16	4	16	8	16	7
TATCCGGTGGGTGGTC	alt_5268_upstream	142	136	168	137	151	140	180	143	173	103
AGACGCTCACATATGA	alt_5268_upstream	41	37	37	23	60	36	53	36	52	24
GCCCATGTCATCGCTT	alt_5268_upstream	10	22	15	15	25	15	24	20	21	11
CTTTGAACTATCCTGT	alt_5268_upstream	22	46	31	31	44	29	34	26	30	26
CAGTAGCTCCCAGATT	alt_5268_upstream	48	56	82	67	94	53	65	63	88	51
AGCGCTGCTCCCGTCT	alt_5268_upstream	35	32	28	39	41	25	34	25	28	33
TCGTCAACGCGTTTCC	alt_5268_upstream	26	43	37	26	43	21	52	24	56	23
AGGAGGGTTCGAGTTC	alt_5268_upstream	7	5	3	1	7	3	5	0	5	4
GACATGGGCATCGCAC	alt_5268_upstream	21	35	29	34	31	23	37	15	33	25
TCCGTTATTCGAGAAT	alt_5268_upstream	5	5	3	7	7	5	4	8	8	6
TTCTCGTATTCTAAGA	alt_5268_upstream	10	12	15	11	18	13	10	12	12	8
ATAGTCCATCATGCGT	alt_5268_upstream	15	28	21	16	17	22	31	15	22	20
GTTTCACGTACTTTCG	alt_5268_upstream	35	21	31	24	41	29	39	21	30	19
CTTAGAGAAAGCTGAC	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
CTACGTTCTTATTATC	alt_5268_upstream	17	15	19	18	9	5	26	16	23	11
GGCATCGCGGTGTGCT	alt_5268_upstream	32	42	55	45	47	41	52	44	51	45
AGTCTGTGGATCCACA	alt_5268_upstream	17	12	16	24	10	14	24	14	21	13
GATTGTTTCGGTAAGA	alt_5268_upstream	48	54	63	37	71	49	57	51	62	46
AGGCAACTTAATGTTT	alt_5268_upstream	0	0	0	1	0	0	0	0	0	0
CTACATGGTCCTCTCT	alt_5268_upstream	69	71	98	69	97	66	78	59	83	66
AGTGTGACGTATATTT	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TCACTGTATCGCTGCA	alt_5268_upstream	37	46	37	30	36	28	34	25	30	33
GATCAAAGGCTAGGAT	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
GGCATTTTAGTTGCTC	alt_5268_upstream	19	22	14	10	17	13	19	12	24	10
TTGTCCGGTATTAATT	alt_5268_upstream	54	53	77	44	60	67	91	50	76	44
GTCCCTCATCGCACCG	alt_5268_upstream	18	43	30	29	36	21	24	25	32	20
CGTCTCTAGCTATACC	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGATCATCCGACT	alt_5268_upstream	7	22	18	19	23	10	26	11	21	12
TCTTTGATAAGTTACT	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTGATTATAATGT	alt_5268_upstream	13	13	9	17	26	10	20	4	18	13
CCATGGTAATGACTCT	alt_5268_upstream	0	0	0	1	0	1	0	1	0	0
AGGTTCATGTCTACCA	alt_5268_upstream	75	107	56	60	87	67	107	69	106	69
GTCGGTTTCCGGGCAC	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCGATAAGTAAA	alt_5268_upstream	19	28	18	12	20	8	25	10	14	14
TGTAAGCCCAGACTTC	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
CAAGTGTGACCTTCCT	alt_5268_upstream	53	67	53	52	92	67	82	41	68	42
GTGACGGATCGGTTGA	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
GGTTCCATCATCCCCT	alt_5268_upstream	67	107	75	69	116	57	98	53	108	47
CGTTGTTCGTAAACTG	alt_5268_upstream	19	16	28	23	27	25	34	16	38	18
CTGTCCCTGCAGTTGA	alt_5268_upstream	37	65	54	40	76	30	74	35	67	41
TTGACCGGATTCATCA	alt_5268_upstream	74	121	91	82	116	68	131	57	121	60
GTATCGGATGGTGGCC	alt_5268_upstream	16	21	33	24	24	15	39	22	22	16
GGCCTCCTGATGAATA	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TAAGCTGATCCCGAAA	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
TTAACCTGGGTGGCCT	alt_5268_upstream	9	17	10	9	9	6	12	4	16	11
CATTTCATGTTAACTA	alt_5268_upstream	14	24	27	16	25	20	24	17	23	19
CGCAATAAGTACTATA	alt_5268_upstream	7	10	9	6	8	4	19	8	12	6
ACAACGCTAACTATGT	alt_5268_upstream	18	38	15	13	33	20	21	13	25	13
TGTTCCGGGGCAGTCT	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
GTTTGTCGAGGACCTG	alt_5268_upstream	12	15	15	3	9	13	13	10	15	5
CGATCCGACGCCACTG	alt_5268_upstream	2	0	0	1	2	2	1	0	2	1
AATCGCAGCTTGTAAG	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
CTTATGAGCGAAGTTC	alt_5268_upstream	82	129	117	110	138	76	130	79	124	82
GTCAAGGGTTGGGGGT	alt_5268_upstream	18	26	20	23	25	21	28	20	31	18
GGCTAAACGGGGATGC	alt_5268_upstream	38	34	42	31	51	33	33	34	30	23
TAACCGCCTTCCTGCC	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
GATCTATCTCCTAGTG	alt_5268_upstream	29	39	31	23	56	20	39	36	58	34
CAGGACGCCTCCCTTG	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
GGTATTTCCGGGTGGA	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
GCAGTCGGCTATCCGC	alt_5268_upstream	24	31	25	29	33	21	34	29	34	16
TACTGTGTGCAATTGG	alt_5268_upstream	7	8	10	9	13	7	11	12	13	9
CCCATGAAGCGCCGAC	alt_5268_upstream	41	55	71	49	45	42	68	51	69	52
GCTAACGTATCGGGTA	alt_5268_upstream	1	5	6	0	1	3	1	3	4	1
TCTTACGTTCGATCAC	alt_5268_upstream	20	26	31	16	31	14	28	34	43	23
GGCGTGCATATGCTGC	alt_5268_upstream	1	1	4	1	1	0	0	4	0	0
CTTTGAGCTAGTAGAC	alt_5268_upstream	13	24	15	29	15	10	18	12	26	15
TATCGTGGTTTGTCGC	alt_5268_upstream	0	0	0	0	0	0	0	0	0	0
ACATCCGGGAGTGCAT	alt_5268_upstream	7	12	7	5	18	9	15	15	16	13
AATCGGGTCATAGATT	alt_5268_upstream	49	110	78	71	90	78	96	55	94	83
GGGCACTTTCTCTGTC	alt_5165_RC	2	5	11	3	1	2	6	3	4	7
TTTATCTCTTGGCTCC	alt_5165_RC	197	112	213	179	121	175	141	179	143	89
TCGTCCTATACGTCTA	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TTTTGCTTTTTGGGCG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GTATGGACTGTTTTAC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CTTACCGCGCATACAG	alt_5165_RC	23	28	37	23	26	31	36	15	27	25
TCACGGGATTTCGGGG	alt_5165_RC	7	5	6	7	2	5	3	6	6	10
GGGTGAGCCTTCTTAA	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CAATCATACTTCTGAT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TAACTGACTCCCTCCA	alt_5165_RC	61	72	83	50	81	58	61	70	56	56
CGCCTTCGGGTGGAGC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TTGAAAGTGGGTGGCG	alt_5165_RC	50	42	49	43	41	52	50	50	44	45
GGTCTTGGTCGCCTCC	alt_5165_RC	36	26	32	43	44	31	24	34	36	43
TATCACCAGGTGGTAA	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
ATACAAGCTTTGAAGC	alt_5165_RC	88	68	85	85	62	76	59	61	66	58
TGACAGACGTTCAGTC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GTTGAGGCGATTTTCT	alt_5165_RC	30	25	27	16	21	31	27	27	12	31
TGCTTTTGTCTCCAAC	alt_5165_RC	17	4	17	14	9	14	12	15	14	7
CACTGATCTTGTGAGA	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TAGGTGGATTCTTATG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
AAAGTCTGTGCTGACT	alt_5165_RC	13	12	15	23	9	15	10	12	8	16
GGGCCTGCCAGCCAGA	alt_5165_RC	31	19	34	37	17	34	21	22	11	22
CTTACATACCCTCTAT	alt_5165_RC	21	27	32	24	19	25	24	27	18	26
CACAGCAACCGATCTT	alt_5165_RC	14	15	13	23	15	8	15	7	12	15
GTTCTTTTCCGCCCAC	alt_5165_RC	34	23	34	40	29	44	36	29	17	43
ATTACGCTTGCCGGTT	alt_5165_RC	9	4	12	11	11	7	7	10	6	4
ATAGCTTATATACCTC	alt_5165_RC	11	6	8	10	9	8	6	13	5	5
AATTGCCTGGCCTTAC	alt_5165_RC	39	25	27	28	22	25	16	16	33	21
GCGCATTACAGAACTC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CTATTCTAGTCCATAT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
AGTAGGTAATGCTTGC	alt_5165_RC	32	22	51	38	27	43	34	38	34	29
CTTATTCGTCGCTTGT	alt_5165_RC	5	8	5	5	4	6	4	4	8	7
CGGCTATCTCTAGTAC	alt_5165_RC	67	63	59	62	54	73	59	58	39	54
ACCAGAGGCACATCAT	alt_5165_RC	49	44	66	64	58	57	54	48	51	40
GCAAGTTTTAGCATAA	alt_5165_RC	60	40	50	42	55	59	61	44	47	50
TTCCTACACAAGCGCC	alt_5165_RC	18	17	24	18	19	24	27	26	29	18
GAGAATCGCAGCTGTT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GAAAGTAAGACGGGAT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GGCTCACGGTGATCCT	alt_5165_RC	45	44	70	76	38	55	54	67	63	59
GTTCGAATGTATAGAT	alt_5165_RC	3	6	7	4	7	7	13	8	5	4
CCACAGCTCCTGCTTT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CGGTGTTAATGTCCAC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GGGTGTCACCTACCTG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TGATCGCATGAGGATT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CACTTCCTACGCAAGT	alt_5165_RC	37	30	50	51	36	34	43	41	27	37
TCGGGTGTCGCTCTAT	alt_5165_RC	38	34	49	41	22	48	34	45	37	38
TTACGCGCCTTTGGGT	alt_5165_RC	54	47	79	79	49	57	52	57	57	53
TAACTCGTTTATGTAC	alt_5165_RC	62	41	46	37	45	62	32	54	49	35
TTCGCCGCCCTTCGTC	alt_5165_RC	2	1	8	10	1	3	2	1	3	3
GGTTTGGCAAGCACTG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GGGTGGCGGCTCTCAC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GGGCACTTTCTCTGTA	alt_5165_RC	40	33	27	17	30	29	21	38	41	21
CCGTGACGAGTCGTGT	alt_5165_RC	59	84	64	73	64	40	49	53	77	45
TAAGTTCGCTGCTCTG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GTTGACCCGTTTATTG	alt_5165_RC	13	10	9	6	9	6	8	9	11	5
ACTGAGTTTCCAGTGT	alt_5165_RC	24	33	34	35	21	30	34	31	33	24
CTGCACTGTTGAGGAA	alt_5165_RC	89	86	100	83	62	55	69	65	80	84
CGTATAGCCCTGGTAA	alt_5165_RC	155	144	204	182	147	152	177	170	175	126
GAGCTTGAGATCGCGC	alt_5165_RC	42	36	45	36	32	48	39	50	51	41
CACGTATACATGTTTG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TAGTCGTGACAGCGTT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TGGCTGCTTGGACGTC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CACCCAGAGGGCAGTC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CATATTAGCGGAGACC	alt_5165_RC	62	39	58	47	36	49	29	36	34	48
TGCTCTAACTTGCTGG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
AGGTCAGCACAAGTTC	alt_5165_RC	25	14	22	21	12	22	19	27	22	22
ACTGCGTGCCTTCTGT	alt_5165_RC	71	48	97	84	68	52	65	86	84	55
CGTGCTAAAGGCTTTG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
ATGTAGTTGCTTGGTC	alt_5165_RC	7	6	16	15	9	10	7	10	6	10
TCCAGGAGTCATCGAA	alt_5165_RC	14	5	26	11	16	13	19	12	13	15
ATCCGGAAGATCTAAA	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TTTATTAAGATTTGAC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GTAAAGTGTGGTCGGG	alt_5165_RC	16	12	18	14	15	9	11	8	8	15
TCCGTCTTTACCCTCT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CCAGGGTGGCCTTCCT	alt_5165_RC	2	4	6	8	5	6	3	2	6	9
TGTGATTGAGGGAGGC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
ATTTCCTTATTTGAGG	alt_5165_RC	147	112	170	165	114	115	133	113	138	120
GGAATATTTTTGTGAC	alt_5165_RC	79	52	74	75	65	78	79	54	66	64
ACACTGCGGTTTATAG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GGATCTTTTTGACTAC	alt_5165_RC	15	9	8	10	4	12	2	7	12	9
CTACAAATGAGGTTTG	alt_5165_RC	14	6	15	8	7	8	8	8	11	9
TGGTCCACAACTCGGA	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TTCCGATTATTGGGGC	alt_5165_RC	3	2	4	1	3	6	2	1	0	3
TGACAAATTATCTGCT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GACGCAATCTTTATTG	alt_5165_RC	7	5	3	10	8	11	10	11	11	7
CACACAGTTAATGTTT	alt_5165_RC	15	12	22	8	12	14	19	14	16	11
TTAGGGCGAAAGGCGG	alt_5165_RC	46	45	46	47	42	45	37	42	46	29
CCATTCCTCCAGCGGG	alt_5165_RC	32	25	35	24	19	22	18	25	11	24
CTACAGTTAGTTTCGG	alt_5165_RC	69	60	82	75	55	62	77	71	58	60
GTCGTCACCTGAGCAT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GGGCTCGTTATCCATT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TGCATTAAGCAGCATC	alt_5165_RC	15	7	13	13	14	13	6	15	9	10
CCTCGGATCTCTCGTC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TTACCACAACACTATA	alt_5165_RC	31	28	42	23	34	32	27	22	28	26
ATAGTGCAAGCGGGTA	alt_5165_RC	60	58	64	53	47	56	70	63	53	63
TGCGATGGAACGAAAC	alt_5165_RC	7	4	4	5	3	5	8	5	5	11
CATGGCTTAGCTTCCG	alt_5165_RC	17	16	22	30	18	22	15	22	19	16
AAAAGGGGCAGCCGTC	alt_5165_RC	83	97	159	125	111	110	90	118	119	93
GCTGAATAAATTGAGC	alt_5165_RC	12	18	20	18	14	14	18	17	10	16
TTCCCTCGTTTTCGCT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CCCGTCAGTTCATCTA	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GTCCAGACCAAATCAC	alt_5165_RC	15	15	21	17	18	14	16	18	13	12
ATTCCGGTGCGACATT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GTTTTCTGATATTTTA	alt_5165_RC	29	24	36	35	25	23	34	30	42	38
TCCGCTAGCGCTCCAC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CGGCATTTCAGCGGGG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
ATTCCTCTGACAGGTT	alt_5165_RC	5	7	7	8	7	13	11	6	9	3
GCAGAGTACGTGGAGC	alt_5165_RC	4	2	3	6	3	4	4	4	5	2
ACCTCCTGCCGGCTTG	alt_5165_RC	0	2	2	1	1	2	0	2	1	0
TTACGAGATTCTTTTT	alt_5165_RC	91	60	104	75	73	85	57	67	65	76
ATTTTATGAGATGTGC	alt_5165_RC	12	16	23	24	15	18	24	20	12	14
TTTATGTTCTTTAGCG	alt_5165_RC	180	183	239	242	161	196	183	166	153	176
AATCTCTATATAATAT	alt_5165_RC	36	22	40	36	32	27	22	37	34	32
CTTTTACCTAGCTTCT	alt_5165_RC	23	34	32	31	29	22	14	38	34	22
AGGTATTTGGGAGTTG	alt_5165_RC	20	17	23	12	20	17	9	12	21	13
AGCACTCCTATCAAAA	alt_5165_RC	21	39	25	24	45	8	33	15	43	20
CTCACCAATACCTTGT	alt_5165_RC	10	8	22	11	3	6	11	19	12	20
AATTTTAAAGCTCAGC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CCAATTAAGCATGCTC	alt_5165_RC	18	52	29	26	39	25	64	36	45	13
TTCAGGCTTGAGAACG	alt_5165_RC	474	362	597	451	355	487	407	441	409	460
TGCTTCGCCCGGGACT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CCTGTTCCGAATATGG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
GTCAACCCTGAAACTC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
AGCTTCTTGCCGGTGC	alt_5165_RC	0	0	2	0	0	1	3	0	0	2
AGACGGTATTTTTAGA	alt_5165_RC	17	8	24	20	13	16	7	15	16	19
CCAATTTTACCTGTGT	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
ACCGTTATCCTCACCC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CGGCGCGACGGTGGTC	alt_5165_RC	11	17	20	11	20	18	29	15	20	10
AATTACTCTAAGGCTC	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
TCAGACCTGCGTAGTA	alt_5165_RC	37	36	49	38	41	36	33	39	27	27
TATGGTTCGGCATATC	alt_5165_RC	33	30	54	54	39	39	43	33	29	39
TACGTAAGTCGGTGGG	alt_5165_RC	0	0	0	0	0	0	0	0	0	0
CCGGTGCCAGCTTCGG	alt_5165_RC	3	2	0	0	0	0	3	0	0	0
GCTCGGCAAGCCTTTG	alt_939_RC	0	0	0	0	0	0	0	0	0	0
ATGATCGACCTTTCCT	alt_939_RC	379	292	428	404	263	393	310	401	307	389
ATGATCGCCCTTTCCT	alt_939_RC	0	0	0	0	0	0	0	0	0	0
AAAGTCTCTTGGTTAT	alt_939_RC	3	3	7	1	3	7	2	5	5	4
CATAAGTATTCATCTA	alt_939_RC	0	0	0	0	0	0	0	0	0	0
CTCTACTAACGAGATT	alt_939_RC	31	14	41	26	26	26	24	26	24	26
ATTCTGTAAATATCTA	alt_939_RC	90	59	119	98	53	86	59	79	78	82
GAATCATTTCACGATT	alt_939_RC	28	11	50	20	22	35	20	26	24	20
GCAATACAGGGGCGTC	alt_939_RC	38	38	54	53	44	52	36	50	38	51
AATGTGTTATTTTCGA	alt_939_RC	33	30	55	40	30	41	28	33	38	30
ATGCCGTAATTTTCTC	alt_939_RC	56	31	52	24	25	48	24	47	30	42
AAGACCACCCTTTCCG	alt_939_RC	0	0	0	0	0	0	0	0	0	0
AACTCTTGCCTGACCA	alt_939_RC	11	9	11	7	8	12	10	13	6	13
GATAGACTTTATTCCA	alt_939_RC	9	7	10	9	7	14	5	6	9	7
GACTTACCACGGTACA	alt_939_RC	6	6	3	5	7	7	7	3	12	2
CGTTTAGAAACTTTGG	alt_939_RC	88	72	154	108	115	100	97	117	88	101
TGGCTAACTAATAGCG	alt_939_RC	13	6	13	17	5	16	9	6	10	11
GATTCCATCCTGGCCT	alt_939_RC	78	79	101	98	59	67	67	75	71	79
ATATTCCACCGTACAG	alt_939_RC	0	0	0	0	0	0	0	0	0	0
CTTATCTAATGACACG	alt_939_RC	29	22	26	19	22	22	16	26	24	11
GTTTGCTTCAACGGAG	alt_939_RC	67	57	73	68	43	64	49	60	43	56
TTCATGGTATAGGGCC	alt_939_RC	86	65	89	78	45	68	79	66	57	65
CCATGATGATTTTCGT	alt_939_RC	13	21	26	19	33	15	21	17	26	15
CGTTTCGTTAATAACC	alt_939_RC	31	32	37	35	27	27	38	34	31	32
TTTAGAATCACCAACT	alt_939_RC	269	172	341	284	183	269	178	255	209	212
GATTGGTCCGATAGAC	alt_939_RC	0	0	0	0	0	0	0	0	0	0
GTTGATCGCAGCCCAC	alt_939_RC	0	0	0	0	0	0	0	0	0	0
AATGAAGTGACTTAAT	alt_939_RC	65	60	71	59	44	79	58	52	60	65
CTAGGTCTAGTGATAG	alt_939_RC	91	95	110	86	82	99	82	90	74	80
TGTTTTCTTAGACTCC	alt_939_RC	59	47	57	52	36	58	33	39	39	64
CAACATGGTAATTATA	alt_939_RC	132	87	161	140	123	118	120	122	113	121
GGTGTGCGCGATAATA	alt_939_RC	160	129	194	142	118	149	116	153	123	123
TCGTCTTGCGTGAGGA	alt_939_RC	0	0	0	0	0	0	0	0	0	0
TCAATCGAATTGTTAT	alt_939_RC	51	26	46	51	40	36	38	47	28	40
TCACAGTTTGAAACCT	alt_939_RC	85	53	107	84	67	71	73	94	70	68
TCTGGAGACCCAACGG	alt_939_RC	135	107	178	148	93	151	118	140	98	113
GTACTACGATGGAATT	alt_939_RC	25	14	30	25	18	28	19	17	30	27
ATAGACTTTCAGAAGT	alt_939_RC	72	51	62	62	60	56	44	55	55	53
GTGTTGGACCTCCGTA	alt_939_RC	54	43	61	46	48	48	46	38	42	53
TTGGGACGTGCCGACC	alt_939_RC	46	40	51	56	32	43	27	45	36	40
GCTTCCCGACCCCTGA	alt_939_RC	139	140	176	148	150	147	150	152	133	126
TTTATAGGTCATGAAC	alt_939_RC	0	0	0	0	0	0	0	0	0	0
GCGCTATGCTTTGTGG	alt_939_RC	130	102	153	123	114	116	111	124	121	115
CCAACAAGCACTTTTC	alt_939_RC	48	35	61	55	49	49	52	58	36	55
CCCCGCGAAACCGGTC	alt_939_RC	271	198	331	268	220	276	173	245	217	281
TATCCTCTTTAGGCGT	alt_939_RC	0	0	0	0	0	0	0	0	0	0
TCCAGTTCGTTTTCCC	alt_939_RC	35	35	45	40	26	32	37	27	26	29
AATAATGGACTGGATG	alt_939_RC	39	21	37	25	16	25	12	37	25	28
TAAGTACTGTTCAAAA	alt_939_RC	40	32	58	40	26	33	25	49	38	30
TGTTCTTGCCTAAAGG	alt_939_RC	73	61	99	72	67	76	63	67	58	55
GTCCATAGGGAAGCTC	alt_5777_new	14	11	9	18	23	16	9	17	21	15
GAGGGCCCAATCTTTC	alt_5777_new	53	43	42	34	39	31	32	37	37	42
TCTTTATGTGCTATTC	alt_5777_new	0	0	0	0	0	0	0	0	0	0
AAGATGGCGAGGTTGT	alt_5777_new	2	6	4	4	10	2	3	1	3	6
AAGAAACACTGACTCG	alt_5777_new	10	7	7	7	11	10	9	16	7	7
GGTACCTTTATTCAGA	alt_5777_new	0	0	0	0	0	0	0	0	0	0
TTCCTTACATTTGACA	alt_5777_new	8	12	7	5	8	6	6	8	4	4
GCACAACTCTTAGTAG	alt_5777_new	186	211	242	178	221	143	226	168	245	156
TTGCGCGTAGCAATGT	alt_5777_new	57	79	72	54	69	73	60	48	60	77
TGTGTGACCATTGAAG	alt_5777_new	0	0	0	0	0	0	0	0	0	0
CTTCGGCCGCACTCGG	alt_5777_new	1	10	3	1	10	1	6	1	8	1
GCGTACTTGGCTAGCA	alt_5777_new	19	24	17	20	18	20	26	8	20	20
TCCTGATCCATTAAAA	alt_5777_new	11	9	8	10	14	3	16	8	18	12
CGTCGATGGGCATCAA	alt_5777_new	45	57	51	54	72	59	55	44	58	45
GCTGTACATGTGCAGT	alt_5777_new	45	39	37	30	50	38	40	38	33	25
TTAAACGTCCCTGGGG	alt_5777_new	0	0	0	0	0	0	0	0	0	0
GCTTCTGACTGAAGTG	alt_5777_new	89	91	106	69	113	73	106	85	99	90
CTATACGGTCTTAACT	alt_5777_new	80	100	137	99	112	80	138	95	99	81
CGGCATGCGGTTGCCC	alt_5777_new	67	32	68	38	49	57	38	60	49	39
AGACACAGTCAGTCGG	alt_5777_new	109	93	122	93	92	100	104	80	109	103
CATGGGCGTCTCACTG	alt_5777_new	30	27	35	34	11	35	24	31	31	30
TCTGTTTTTGCTTGTT	alt_5777_new	21	14	19	14	18	18	21	19	14	23
TTCGCCATTCTCCATC	alt_5777_new	15	13	30	18	31	19	19	25	20	17
ATTTTTATATAGTCTT	alt_5777_new	71	83	80	69	63	71	73	65	81	68
TCTTAGTGGCTTAAAT	alt_5777_new	11	9	16	5	14	9	7	13	11	9
TTGAATTGCGTTGTGT	alt_5777_new	23	19	23	13	15	16	17	12	8	15
TGAGTTATGTTTTGTC	alt_5777_new	32	23	22	25	27	27	24	23	18	25
ACGTTTAAACGTGGTG	alt_5777_new	16	9	11	13	15	15	10	21	11	12
CCTGACTCACAATTTG	alt_5777_new	15	38	38	16	35	12	42	22	38	18
TGGACAACAGAGTTAA	alt_5777_new	188	163	189	152	188	142	203	149	190	174
GTTTCGCACCTCGCGT	alt_5777_new	0	0	0	0	0	0	0	0	0	0
AAAGGAATTCTTGGTG	alt_5777_new	18	20	19	6	17	18	21	9	17	15
TCCTTCTAGAACAGTT	alt_5777_new	0	0	0	0	0	0	0	0	0	0
GGTGCCGCGATGTCGT	alt_5777_new	0	0	0	0	0	0	0	0	0	0
GTTCAAGCTTTAGCGC	alt_5777_new	12	2	11	8	9	9	9	5	5	9
AGCATACAAGCTATTT	alt_5777_new	0	0	0	0	0	0	0	0	0	0
ACTAGTCTGTTGGGTC	alt_5777_new	0	0	0	0	0	0	0	0	0	0
AATATTCTAGGGCAGG	alt_5777_new	84	119	99	87	92	70	97	55	93	69
GCGAACTCGTAACCCA	alt_5777_new	0	0	0	0	0	0	0	0	0	0
GTTCAGTTTTCGGCAC	alt_5777_new	113	100	117	88	81	98	104	87	106	69
TAAACCTGTCTTCGGC	alt_5777_new	98	112	100	80	131	79	119	88	128	93
TCGAGTTGTGAAGAAG	alt_5777_new	73	87	113	77	86	71	97	93	96	67
TGCAGCGATAACGCCG	alt_5777_new	0	0	0	0	0	0	0	0	0	0
TAAACTGAGGATAGGC	alt_5777_new	0	0	0	0	0	0	0	0	0	0
TTCGAAACGTTCTGCC	alt_5777_new	37	34	31	26	37	44	29	40	26	25
AGCTCCTGGTGATTCA	alt_5777_new	18	14	17	16	13	16	17	13	13	15
TTTTTGACGCGGAGTA	alt_5777_new	15	21	31	17	21	20	16	19	27	18
CCGGCTTCCATGAAAT	alt_5777_new	75	64	96	64	55	67	59	67	57	73
TGGTCCCGTTTTTCAG	alt_5777_new	0	0	0	0	0	0	0	0	0	0
TAGCCTAGTTCATCTC	alt_5777_new	8	16	2	4	7	4	7	5	11	7
CCATGGCTTTATCAAT	alt_5777_new	31	26	23	28	32	28	33	29	27	18
ATATATTTATTGTATA	alt_5777_new	78	64	85	47	61	59	69	59	62	63
AGATGTTCTCACGACT	alt_5777_new	40	34	45	29	20	28	27	26	32	26
CTCTCCCGGACTAGCC	alt_5777_new	0	0	0	0	0	0	0	0	0	0
TATGCTACGTAGAATA	alt_5777_new	0	0	0	0	0	0	0	0	0	0
GTTATTGACCCTGACA	alt_5777_new	0	0	0	0	0	0	0	0	0	0
TGCCATCGAATTGGAG	alt_5777_new	62	79	68	68	57	58	63	59	50	47
GTCTTGCTTCACAGTT	alt_5777_new	55	72	76	59	82	55	56	43	75	61
CCGGGGTAGTCTCGTT	alt_5777_new	0	0	0	0	0	0	0	0	0	0
CCTCCAATCATACGTG	alt_4574_fdr	61	106	65	69	123	55	135	44	134	45
GCTATTCGAGAGCAGA	alt_4574_fdr	3	8	7	6	7	0	7	3	10	3
GCGTCTCTCGTTCTGC	alt_4574_fdr	22	25	21	24	35	16	27	15	24	18
TTGACGACTCCAGTTT	alt_4574_fdr	5	6	8	3	6	3	12	3	5	3
GGGACAACCTTTTGAT	alt_4574_fdr	6	6	1	6	8	4	9	4	11	2
CGTTGTTATTTGTAAT	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
CCTATTTTTTTGTTGT	alt_4574_fdr	11	4	8	6	9	6	10	6	12	5
TTCGGCACCTTTGGAC	alt_4574_fdr	12	19	16	15	18	10	17	11	24	5
CGTTCTCTACGCTTCC	alt_4574_fdr	22	51	20	24	40	28	41	11	45	21
TCAGAGGCCGGGCTTT	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
GCTGCTCATGTGGGCC	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
TATAAGTCTAAATGTT	alt_4574_fdr	7	15	8	4	10	7	9	8	9	3
TTCCCGCCACACGAGG	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
CAATCGGTGGGTGGCT	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
CTCGATCGTTATCTGT	alt_4574_fdr	22	48	31	15	30	20	35	16	47	22
AGTCGCCAAGCCCTTC	alt_4574_fdr	36	80	59	45	69	44	78	35	84	42
CTACCTGATGGCCAAA	alt_4574_fdr	2	4	1	3	9	2	3	4	8	2
TTGGCCATTGGTATAC	alt_4574_fdr	17	20	18	14	22	13	24	16	23	15
CCCCAGCACAAGGTAA	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
GAACCCACGTTAGGAC	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTTGTGTTGCGTC	alt_4574_fdr	6	11	7	4	9	6	15	3	11	4
GTCTAAAGCTGTCATC	alt_4574_fdr	40	115	71	57	105	54	92	65	96	59
TTCCATACTGGCGTGA	alt_4574_fdr	1	8	6	1	7	3	4	7	6	4
CGGACTATCTGGTTCC	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
GGTCATGTGACGGGCT	alt_4574_fdr	36	50	29	42	52	31	55	26	44	28
ACAACAGCTTTGGTTT	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
GTCATAAAGGTATTGC	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCTGTTGAGAGTA	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
TCACCGTATATCGGTT	alt_4574_fdr	6	13	6	11	25	7	21	5	28	9
ATCTTCCGTCTCGTGC	alt_4574_fdr	29	59	29	22	67	34	67	31	67	35
AAATTCGCCCCCGACG	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCGTACAAAATCA	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
TCGTTGGGAATCATCT	alt_4574_fdr	58	100	71	60	95	41	90	34	100	49
TAATCTCTTTCGATCT	alt_4574_fdr	4	6	11	5	10	6	8	8	16	7
TGGCTCACTCGCGCTT	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
ACGTGGGCTGCCGGGG	alt_4574_fdr	12	13	11	15	24	6	22	4	23	9
TTTAGGCGAATCTCCC	alt_4574_fdr	6	9	14	18	15	8	27	9	20	11
GCCCGACTTGCCCGCG	alt_4574_fdr	7	6	8	8	19	6	18	6	14	5
TGAACAGGCATGATAG	alt_4574_fdr	15	23	14	18	19	3	34	7	35	18
GTTGGGCATACTCCGG	alt_4574_fdr	8	16	9	7	16	6	12	8	8	10
TCGATTTGCACGAACA	alt_4574_fdr	12	26	20	15	25	15	42	10	43	16
AGCAGTTACGCCTTTC	alt_4574_fdr	6	12	3	6	4	5	7	3	8	4
TTAATTTGGTGACTCA	alt_4574_fdr	3	3	0	3	4	5	4	2	6	6
GCTTCTGGGATGTGGG	alt_4574_fdr	25	42	27	13	33	18	20	11	33	18
GTAAATGCAGGGACTG	alt_4574_fdr	6	25	13	14	12	10	8	8	14	6
CTAGCCTCGTCGGCTA	alt_4574_fdr	18	22	22	20	29	11	31	22	42	21
CCATTTATTCGTGCGC	alt_4574_fdr	3	29	6	4	25	3	22	5	25	3
ATTTTGGAAGGGCATC	alt_4574_fdr	12	20	15	14	18	3	20	15	21	8
GAATGATGACCCTTGG	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
GAAACAAACATGCGCC	alt_4574_fdr	2	12	3	3	8	7	11	4	9	6
TTGTGCGCTTCTTGAA	alt_4574_fdr	0	7	0	1	6	0	5	0	7	3
TTGCATTGCTAAGACT	alt_4574_fdr	39	103	66	38	102	35	94	56	88	60
CGCTAAACGAGGGGGC	alt_4574_fdr	8	11	12	17	13	9	20	9	12	7
GTGACTAGGTCTAAGC	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
TTTTAGTAACGATTAT	alt_4574_fdr	6	8	5	7	9	7	6	3	8	1
AGTTCAAGTCCTTGGG	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTCCCGCACAGGC	alt_4574_fdr	92	122	103	97	155	88	150	80	127	73
TTTCATTCGGAGCGCC	alt_4574_fdr	0	0	0	0	0	0	0	0	0	0
CCAAGAGTCGCATCAC	alt_4574_fdr	3	2	3	4	1	7	9	0	12	3
TTTACGACACACGGGT	alt_940_fdr	64	31	79	54	54	55	45	94	47	52
CGACACCCCGTGTGAT	alt_940_fdr	64	46	89	109	44	69	57	65	57	74
GGTATATCTTCTTAAT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TCAATTCAATCGATTT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
CATTTCTCGGATATGA	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GGATCCGGCGACTTAT	alt_940_fdr	0	5	2	0	3	1	4	1	2	2
TTCGCCCTTCTATAAC	alt_940_fdr	238	128	268	257	116	198	111	220	139	201
TTCTCATTCGGTGTAT	alt_940_fdr	3	3	7	6	2	9	3	7	1	8
TTGTAGCGTGTCCGCA	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TTCAGCCTTCTATGGA	alt_940_fdr	37	38	77	51	29	52	39	64	29	44
CTCGTTATCCATGCCA	alt_940_fdr	24	16	30	30	8	23	10	26	5	15
GCCTGCGTACTTGATA	alt_940_fdr	40	26	47	28	19	34	23	23	24	25
TGTCCGTAGTAGTGTC	alt_940_fdr	53	29	61	83	38	43	30	44	24	52
TATCTTACAACTCAGA	alt_940_fdr	101	54	135	120	74	97	58	101	60	97
AATGGTCGGTTCCCGT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TTGCTGACTAATGCAC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TTACAGGGCTTTTCAT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
AACCCGTTGAGGATCC	alt_940_fdr	8	2	15	4	4	6	3	2	1	3
AGTCCTGCTAACTATA	alt_940_fdr	80	51	90	105	52	79	46	84	47	82
CTACAGTTAGAACGAC	alt_940_fdr	57	32	65	61	28	63	46	57	31	53
TTATAGTAAGCGCGAC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GGCTTTGGTGTCCTTT	alt_940_fdr	36	24	34	23	12	25	19	23	16	25
CCATATACATCAATTT	alt_940_fdr	49	31	63	63	30	37	36	48	47	44
GTCCATGTCTATGGCA	alt_940_fdr	4	11	12	13	5	12	4	8	6	6
AGCAAGTGCATGCTTG	alt_940_fdr	20	18	12	13	14	18	14	15	13	24
CGGTTCGCGCCCCAGT	alt_940_fdr	33	8	27	32	24	34	16	24	12	22
TAGGACATCGTGGTTA	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GAAATATGGACCACCC	alt_940_fdr	32	18	37	42	20	27	27	38	18	42
ACACACCATACGTTTA	alt_940_fdr	11	15	10	10	10	9	10	10	8	8
GGACACTGTCAGGTTC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TATAACGGGAAGAATT	alt_940_fdr	34	23	48	43	12	37	15	38	19	35
ACATGATACGGATCTC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GCCCCGGCTCACGACG	alt_940_fdr	73	54	99	95	51	84	57	86	42	67
GAGCTGACCCGTGTTC	alt_940_fdr	0	0	0	0	0	0	1	0	0	0
CGTGCGAAAATCGTAT	alt_940_fdr	5	5	11	10	8	5	7	13	13	11
AGTTCTTTGAATTAAT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
CTCTCTATTCCGTCTG	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGTTCGGGGTTGC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
CTAGTATATTTGCGAG	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
AAGTTGCTCGGTTCAG	alt_940_fdr	51	18	36	41	22	43	21	21	27	40
CTCCAATGAAATTCCA	alt_940_fdr	65	37	70	56	41	47	52	58	52	38
CTCCTCGGCTATATAC	alt_940_fdr	62	42	84	65	48	70	58	80	55	47
CGATAACCGGTATAGA	alt_940_fdr	14	13	14	10	6	20	9	17	12	7
ACGTTCAAGCGAAACG	alt_940_fdr	65	35	77	65	31	68	47	65	32	47
TTATGGGACTTTTACT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
ACTCGGTTAAACAGTA	alt_940_fdr	33	18	40	49	26	43	23	42	28	32
AACATAGAATCTTGCA	alt_940_fdr	160	76	205	182	103	144	92	131	98	122
TGATGATGGAGACGCT	alt_940_fdr	69	31	70	65	31	69	33	72	39	58
ATGATTGCCGGGGGTA	alt_940_fdr	23	27	29	29	29	45	23	37	16	30
TCTTCTGGTAAAGCTT	alt_940_fdr	11	6	15	21	8	4	10	16	6	11
TGATTAACAGCGGGAT	alt_940_fdr	106	56	105	110	48	132	70	102	83	124
TCGGAGAGATTCTTAC	alt_940_fdr	13	8	8	5	8	15	8	4	12	11
TTTAATAGCTATTCAT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GAGAGAGTATTCGCGT	alt_940_fdr	18	17	30	30	17	23	25	19	13	13
ACTGAAAACATAACCG	alt_940_fdr	40	11	45	41	23	37	18	29	20	22
TATCGTAGTACAAGCC	alt_940_fdr	22	17	31	32	10	17	22	25	14	28
CATCTGATAATTCGGC	alt_940_fdr	23	11	35	21	17	11	15	15	6	18
TTAGCGTGTCCGTTCT	alt_940_fdr	473	295	555	506	307	424	302	429	305	424
ATGCCTTCTATCCAGC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TAACACTTCTTCTGGA	alt_940_fdr	154	89	177	164	96	147	81	149	90	133
CTTTCTCTTATTCCCC	alt_940_fdr	63	28	94	56	30	76	32	66	35	74
CCCCATATCTAATATT	alt_940_fdr	52	21	67	60	24	34	26	44	30	42
ATTCATTTGACATACA	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
CCTATTTTTTCGTTGG	alt_940_fdr	32	20	43	41	18	34	19	38	34	40
CGATCAGTTTCTAGGT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
ATAACAGTACGCTCGT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCGTCGGAGAGCC	alt_940_fdr	74	37	101	73	36	68	37	82	52	62
GAAACTCTAATTCTCC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
CTTGGCCCCCCTTTAC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GGCAGTTGCGCATACT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TGCTGATTCCCCTTTG	alt_940_fdr	71	38	88	60	44	53	45	46	41	42
GATATGTTTGCTGTTT	alt_940_fdr	32	21	53	46	26	46	24	24	27	28
ATCTTCCAATTCACTT	alt_940_fdr	95	68	146	98	54	77	53	105	58	83
AGCCTTACGTCACGTC	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TTCGAAACTTTCTTTC	alt_940_fdr	89	60	76	85	36	82	50	64	42	72
TCAAGGACTCTCTTTA	alt_940_fdr	9	3	10	7	11	8	3	10	7	8
GTAATGTCATGGCTCA	alt_940_fdr	40	36	42	34	25	40	21	49	19	34
CCATTGCTAGCGACGA	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GCCGTATATTACCGTT	alt_940_fdr	89	74	155	117	79	90	96	71	86	78
TGTTAGATGTCCGGTG	alt_940_fdr	136	82	157	161	81	155	84	143	92	112
TACGGGCTTGCCATGC	alt_940_fdr	19	21	24	17	11	18	18	18	14	11
TCCCCGTTCGGTGATA	alt_940_fdr	32	109	37	34	106	32	115	32	113	26
TTAACTAACAACGTTA	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
AGTAACTCTGAGCTCA	alt_940_fdr	10	6	17	15	4	8	9	6	1	11
GCTGTATTACCTGAAC	alt_940_fdr	16	7	6	14	9	10	12	8	12	15
CCTACCTTTCTACTCA	alt_940_fdr	97	46	115	115	61	87	64	84	57	86
GCGTTTCCCCTCAATT	alt_940_fdr	3	2	4	2	4	0	0	1	6	0
GGTCAGTCCCGCATAT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
GCCTCAGCCTTCGCCC	alt_940_fdr	55	31	75	73	42	58	38	49	42	53
ACCATCATAGTTGGAA	alt_940_fdr	6	3	7	5	4	4	7	5	0	4
ACTTGGGGGTCCCCTT	alt_940_fdr	96	61	126	104	60	79	31	93	72	70
TCGGACGTGTACTCTG	alt_940_fdr	31	16	29	34	18	23	17	27	13	20
ATGAATATTTAAACAA	alt_940_fdr	36	24	59	35	30	38	19	44	30	40
GTGCGGATCGTCAGCC	alt_940_fdr	292	125	372	331	149	281	124	234	156	254
AGGTCTTTGATCCGTT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
ATGCTTGGTTCTTTAA	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
TCTCGTCATTTTGCCG	alt_940_fdr	297	180	419	316	146	335	172	300	172	290
CCCCACAGGCTAGTCT	alt_940_fdr	0	0	0	0	0	0	0	0	0	0
CCATATATGACCGCTT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
AGAGCGAGTCAATCAG	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TTTACAATATGCCCTA	alt_5901_new	30	85	29	26	96	34	77	31	104	37
CGACCGCGGTATAATT	alt_5901_new	0	0	0	0	0	0	0	1	0	0
GATTCTGACCCATCAA	alt_5901_new	4	14	4	9	21	7	17	9	20	5
CTGATCGTTCCCTCGG	alt_5901_new	3	6	1	0	18	2	8	2	7	2
GGTTATGGTGAGATTC	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TATTCACGCTGACTGG	alt_5901_new	0	5	1	0	3	0	2	0	3	2
GTCAATCTCTACAGTC	alt_5901_new	4	20	8	4	14	5	17	6	16	2
GCTGGTTTGGAATATG	alt_5901_new	5	11	4	1	8	3	13	1	6	6
ACGTCATATCAGAGTA	alt_5901_new	0	25	8	6	18	3	19	8	35	7
GATATTCGGAGTTATC	alt_5901_new	0	0	0	0	0	0	0	0	0	0
ACATGATGGTAGTCGA	alt_5901_new	0	9	3	2	3	0	1	0	4	1
CCCGGGGTTCGCGCCT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TCGAAAAACAAGTGTG	alt_5901_new	10	18	13	4	23	15	38	10	29	8
AACCTAAATACGTTGG	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TCCCGGCTGCCTCCCT	alt_5901_new	8	8	4	1	13	2	11	3	10	4
GTAGCGTCGCTAGTAT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
CTTTTCTACGGATCTG	alt_5901_new	24	74	33	35	79	31	70	25	80	22
ACTTAGCTTCCTTGCT	alt_5901_new	9	22	12	12	35	19	40	13	31	9
CAACTGGCAGTGGTCA	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TGCCTTCCGTGTTGTA	alt_5901_new	0	5	0	1	7	0	2	3	2	1
ACAAGGTTAGATCCAC	alt_5901_new	6	13	5	0	8	1	11	6	11	3
TTAACTTTATAGTGTT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TCTACCTAATTACCTA	alt_5901_new	0	0	0	0	0	0	0	0	0	0
ACGGCCGCTAGGGATG	alt_5901_new	4	4	0	2	7	5	5	1	7	3
CCAACCCTCGTCTTTG	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TTGAATCAGGTGGCCG	alt_5901_new	7	14	8	7	16	5	23	9	11	10
TCGGAATGTTGCCGGT	alt_5901_new	11	38	24	11	30	14	49	11	29	18
CTCCGAATAAATGTTT	alt_5901_new	3	4	4	2	4	4	4	0	6	0
GCCGGCAGTCTTGCAT	alt_5901_new	132	362	157	125	414	109	379	110	399	106
TGTCTTTGAGAATTTT	alt_5901_new	73	153	63	38	142	49	149	51	158	41
GGTTCCGTTTGTGACA	alt_5901_new	0	5	3	0	6	3	5	0	12	1
TATGTGACCCCGAAAA	alt_5901_new	9	6	6	1	9	5	7	0	13	2
GCTGATAATCGAATGT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
CTAGTATATGGAATAT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
CTCTCTGATATGTCAT	alt_5901_new	0	4	2	4	3	0	2	0	2	0
CCCTAGAATTTCTCTC	alt_5901_new	2	8	4	1	10	2	8	1	7	3
TCTCCTTGCGGCCATT	alt_5901_new	13	32	8	16	30	13	29	7	40	11
TTGTAGTATTGACCAG	alt_5901_new	0	0	0	0	0	0	0	0	0	0
TTAATCTCCGTGGAGA	alt_5901_new	1	1	1	1	4	0	6	1	2	1
TGTTTATATGGTGCAG	alt_5901_new	0	0	0	0	0	0	0	0	0	0
ATGAAAGGTACCCAAA	alt_5901_new	0	0	0	0	0	0	0	0	0	0
GCACTCACATGTGAGT	alt_5901_new	5	24	10	5	19	5	19	6	18	3
TGTAGCGCAGAGGAGG	alt_5901_new	12	40	16	5	31	17	34	12	45	12
CCAAGCTCTTTTTTCC	alt_5901_new	4	41	10	1	58	3	51	1	32	3
GGTGGACTTCTTATCA	alt_5901_new	28	51	17	15	47	30	51	20	62	17
GAGAATGAATTCGGAT	alt_5901_new	30	51	25	30	59	18	55	21	57	21
GATTCTGCCCCATCAA	alt_5901_new	0	0	0	0	0	0	0	0	0	0
ATTGCCGGTCGGGTGA	alt_5901_new	0	0	0	0	0	0	0	0	0	0
GTGGAGTAGACTGGGC	alt_5901_new	3	9	5	3	3	1	11	3	10	1
TTCTTTACAATATGCA	alt_5901_new	14	25	22	9	29	9	28	19	34	13
TCTAGCTTCACTATGT	alt_5901_new	3	7	6	0	4	1	12	4	10	1
GTCTAACTTCCCAAAT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
ATGTAGGTTCGGTTTG	alt_5901_new	20	48	21	17	45	16	57	11	68	13
GCTGGTATTCACACTT	alt_5901_new	1	5	1	1	8	4	14	5	7	3
TATAATTCCATGGCTC	alt_5901_new	0	0	0	0	0	0	0	0	0	0
AGACATCCTCGACCCT	alt_5901_new	3	9	6	3	16	7	18	2	12	4
AATAACTATTTACTGT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
AACCTTAATACGTTGG	alt_5901_new	140	401	168	155	401	148	391	111	423	134
AGTCAAACTTCTGTGA	alt_5901_new	2	11	5	6	10	2	9	1	15	10
ACCGGGCAGATGGGCC	alt_5901_new	7	12	5	4	21	3	18	2	13	4
TTTACGCGGGAATGAG	alt_5901_new	6	13	3	4	11	4	20	3	9	5
GATAGTCACCCCTAGA	alt_5901_new	7	46	18	9	37	11	41	4	55	9
GTGGCATTCTCCATGC	alt_5901_new	3	24	11	7	21	11	7	13	27	6
GCGCTTGTTCTCCCCA	alt_5901_new	0	0	0	0	0	0	0	0	0	0
CTGGTACGATTTAGAT	alt_5901_new	28	68	34	27	85	31	88	36	92	35
TCTCAGGTTGAGTACA	alt_5901_new	17	43	18	24	50	15	40	19	64	13
GTTCATCAATACATGT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
CTAGCGACACGGTATT	alt_5901_new	0	0	0	0	0	0	0	0	0	0
CAAACGAGGATACTCA	alt_5901_new	3	3	3	2	1	3	3	2	9	2
TATTCTTTTTTGTACG	alt_6074_new	32	29	36	27	45	35	44	24	34	28
GCGGGGATGTTATATC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CCATCACCATTTTTTA	alt_6074_new	1	15	5	4	28	4	21	1	24	1
TAAACGGGCAAGGTTG	alt_6074_new	0	0	0	0	0	0	0	0	0	0
AGCTTTCAGATGATGA	alt_6074_new	0	0	0	0	0	0	0	0	0	0
TGTCTAGAATGTTTGC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GCTCCCTAAATCTCAA	alt_6074_new	6	8	13	3	14	4	8	3	9	1
CAAAAATCCTTGGCAC	alt_6074_new	5	2	5	1	6	2	3	3	2	3
AGAACTGCGTATACTG	alt_6074_new	24	32	27	17	26	21	25	18	34	19
GGTGACTTTTGTGGCT	alt_6074_new	14	15	6	6	11	9	21	9	13	7
GGAAATTCTTGAATAT	alt_6074_new	13	7	7	7	11	12	14	12	17	12
TCAGCATTTCGGTTTG	alt_6074_new	26	30	16	27	43	33	32	24	32	22
GTGTCCCTTTTATGTA	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CTTGGCGTCTTAGCTT	alt_6074_new	19	53	43	28	53	16	49	29	52	31
GGGTCTTTCCATCGTA	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CTGTGATCTCAGGCAC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GTTTTAGGCCTTCATT	alt_6074_new	0	0	0	0	0	0	0	0	0	0
TGGGCTCGGCCCTGTT	alt_6074_new	16	21	23	19	25	16	20	18	19	7
GTCATGCCATGGTACT	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GGGATATCGATGGCTC	alt_6074_new	5	11	10	7	8	7	10	3	10	4
TGCCACATGCTGCTAT	alt_6074_new	16	21	21	15	31	11	9	16	23	14
ACTACAATTTTTTATT	alt_6074_new	1	4	4	6	5	2	4	5	3	1
CAATTTGAACGGGAGT	alt_6074_new	1	6	1	3	7	3	3	2	4	2
TACTGCGAATTCATGG	alt_6074_new	45	58	39	46	54	34	64	39	71	42
GGACGAGTGTCAGTCA	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CGCTCGCCGGAACGCC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
ATTTTGTCGTGCGTAA	alt_6074_new	5	5	2	4	1	0	3	2	8	0
TCATGCCGTTTATGTC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CACTCCACCTTCGCTA	alt_6074_new	5	32	12	11	32	10	23	16	36	11
CGATTCTTAAGACGCA	alt_6074_new	0	0	0	0	0	0	0	0	0	0
TTCTTTGCGTATTTTA	alt_6074_new	3	6	2	4	3	0	4	1	4	5
GTGGCGCCAATCATTT	alt_6074_new	0	0	0	0	0	0	0	0	0	0
TTACCACCTCCTCCTC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CCGGTTGGGGGGGCGA	alt_6074_new	16	23	14	17	40	10	28	12	35	12
GAACCATTTGGTCCAT	alt_6074_new	42	94	74	58	100	58	82	48	86	41
ATAGACTGTTATAGAT	alt_6074_new	33	33	32	26	53	27	57	23	40	29
GTTCAGTGTTTGGAGA	alt_6074_new	13	14	12	7	13	14	9	8	14	8
GACGCCCATGATTTTC	alt_6074_new	6	9	12	7	11	10	11	16	18	6
GCCCACGTGCAGGGTA	alt_6074_new	16	39	30	28	34	26	27	26	34	22
AGGGGAGGGTACGACA	alt_6074_new	23	67	35	44	40	31	57	29	53	33
GCGGACACGTGTTCCG	alt_6074_new	0	1	0	1	0	0	0	0	0	1
TTGTGGTTCCTTTTCT	alt_6074_new	0	0	0	0	0	0	2	0	0	0
TTGGAGTGAATGCAAT	alt_6074_new	33	45	34	47	39	25	31	29	44	23
GATATTTCTTGGCTTC	alt_6074_new	4	7	9	0	5	5	3	8	11	5
CCATTCTTCGATACCG	alt_6074_new	43	49	55	54	59	42	56	48	51	49
AAGTTGTCCTAGTATG	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GGTGAATTCTCCACTT	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GTCACGCGATGTCCGT	alt_6074_new	21	7	17	16	8	13	14	21	17	17
AACTGGTCATGGGTTG	alt_6074_new	27	24	37	30	51	24	38	35	48	24
CAGTTTACCCTCGACC	alt_6074_new	2	5	1	3	1	5	6	1	5	1
CCCTATGAGACTCCAT	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GGTTCTCTAGTTCCCC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CACGCCCGCCGACATG	alt_6074_new	32	79	49	46	64	35	69	36	90	34
CACAACGTATTTTCTA	alt_6074_new	21	31	31	21	53	20	52	22	35	25
TATCCCAATAGTTTTG	alt_6074_new	50	72	59	65	85	47	74	46	81	33
TATCTCTCGGCCTGCT	alt_6074_new	10	3	11	17	13	15	12	7	5	7
TCCTCGTATTTTGATC	alt_6074_new	5	6	10	3	7	3	7	9	3	5
ATTGCGATACAAGTGA	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CACAATACCGCATGGC	alt_6074_new	18	31	24	29	19	29	34	29	30	17
TAACCCTCTTTGCACA	alt_6074_new	26	46	24	17	24	27	27	31	41	27
CTCATTTTACCCTTTT	alt_6074_new	5	6	5	7	8	4	3	3	6	5
GCGTACTCGTGTTTCC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GTGTCCGAGACTAAGG	alt_6074_new	0	0	0	0	0	0	0	0	0	0
AATCAAAAACTTTCCA	alt_6074_new	23	38	40	30	46	35	41	34	34	31
TGAGGTGCTTAAGTGG	alt_6074_new	21	41	23	11	33	15	36	17	41	25
CTCGTGAGTCCTTCAT	alt_6074_new	9	5	8	3	10	5	6	7	6	6
ACCTAATAAACAGTAG	alt_6074_new	1	5	2	5	0	2	1	1	2	2
GCCCTCGCCTATCTGT	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GTGCCGCTTAACAACG	alt_6074_new	0	0	0	0	0	0	0	0	0	0
CTCAGCAAACCCTGCA	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GCGTGGAAAAGCTTTT	alt_6074_new	0	0	0	0	0	0	0	0	0	0
GGCAGATCTTCTTCAC	alt_6074_new	0	0	0	0	0	0	0	0	0	0
TTTTTTCCTCGATAAT	alt_6074_new	30	39	29	43	32	24	25	26	50	33
CGATCATCTCGTGCCG	alt_6074_new	0	0	0	0	0	0	0	0	0	0
TCTCTTCGACCGTGCC	alt_6074_new	25	26	34	21	45	24	42	20	45	26
GATCGTAGTTGTGTTA	alt_6074_new	48	78	68	48	65	45	66	40	90	34
GTGGAGATGTGCGTTA	alt_6074_new	20	29	27	38	36	24	30	23	43	21
GACCTCCGGGTACTCG	alt_6074_new	6	3	10	2	6	8	10	8	7	5
CATTCCCGGATCGTCG	alt_6074_new	8	5	4	3	6	7	10	10	7	3
CCCTACTGGATTATTC	alt_6074_new	0	1	1	0	0	0	2	2	2	2
CCTTGTACACACGCTA	alt_6074_new	2	3	2	3	6	4	7	8	4	1
GTTACCCACGTCTCTT	alt_5711_new	7	10	7	7	13	4	18	3	8	3
ACAGGCCGGTCAGTAC	alt_5711_new	12	14	15	12	15	15	14	14	18	7
TGCAAGAGCTGCCTTA	alt_5711_new	8	8	4	5	9	14	10	1	6	5
TCTCTGCCATAGGTAC	alt_5711_new	0	0	0	0	0	0	0	0	0	0
AATTTGACTCTTTTTA	alt_5711_new	3	12	12	11	28	12	27	14	12	10
TTTATCTTCATTGTCT	alt_5711_new	25	30	27	23	33	20	27	18	24	21
CGGAGTTTCCCCCCGC	alt_5711_new	13	10	14	7	19	7	9	16	19	4
AGCTCATACCCGGTTA	alt_5711_new	20	14	38	18	28	14	22	27	21	20
GTCTTTCAAATGGCAT	alt_5711_new	0	2	0	1	1	3	2	0	0	2
GTCCCTGGGAGGACAG	alt_5711_new	0	0	0	0	0	0	0	0	0	0
AGAGATATGGTTGTCC	alt_5711_new	12	7	8	1	9	10	9	12	17	12
TTGTCTTTCGCCAATT	alt_5711_new	17	19	17	9	16	21	21	7	23	9
CTTTATAGTGCTCGAA	alt_5711_new	0	0	0	0	0	0	0	0	0	0
GTGGTACACGACAACG	alt_5711_new	48	80	72	66	83	65	104	65	102	71
TATGCAAATAGCACCT	alt_5711_new	26	49	39	21	38	13	40	19	32	19
TCGGGGGGTTTTATAG	alt_5711_new	47	50	50	38	33	45	52	52	55	31
TCTCGTTGAGGATGTT	alt_5711_new	14	18	6	12	12	6	17	14	19	11
CTCGCCGATTGGAGTA	alt_5711_new	0	0	0	0	0	0	0	0	0	0
AAAAATTGGCTCTGTA	alt_5711_new	47	49	51	37	45	37	56	35	41	36
ACTCTTCTCCACGAAA	alt_5711_new	0	0	0	0	0	0	0	0	0	0
TAGCTGAATACGTCTA	alt_5711_new	20	26	22	19	24	21	47	21	41	19
GAGCTTTAGCTTGTAA	alt_5711_new	0	0	0	0	0	0	0	0	0	0
AGATTCTATGTCACAT	alt_5711_new	0	0	0	0	0	0	0	0	0	0
GGTTTTCTGCCTTCTG	alt_5711_new	2	0	0	0	1	0	0	0	1	1
GTGTTGTTGCCCGCGG	alt_5711_new	31	42	33	46	55	42	42	34	62	43
ATTTCCGTCGCTTTTG	alt_5711_new	1	4	3	2	3	5	1	1	3	4
CCCATTGGGGTCGAGT	alt_5711_new	9	20	8	11	11	17	10	12	14	4
ACTTGCCGTCCGTCTT	alt_5711_new	20	45	31	20	37	43	34	33	49	21
GCGTCGTTTTATTACT	alt_5711_new	6	16	13	14	25	13	24	13	22	9
ATGACTTGTTTACGTT	alt_5711_new	1	8	2	2	2	1	2	0	7	2
AGCAATGATTTTTGCG	alt_5711_new	43	59	57	35	56	43	74	27	76	41
CTATTTATAGGACAAT	alt_5711_new	75	83	109	81	100	71	114	63	107	79
AAGAAACGACCGATCT	alt_5711_new	0	0	0	0	0	0	0	0	0	0
ATATGCCTATCAACTC	alt_5711_new	29	48	30	29	38	36	41	22	41	23
GTTCTGCCGTTGTCAG	alt_5711_new	18	21	12	13	23	18	19	16	25	17
GAGGGTAGGAATTACC	alt_5711_new	0	0	0	0	0	0	0	0	0	0
TTCACGCATTCGTGAA	alt_5711_new	45	63	45	48	59	23	53	31	48	27
GGATGCGTTATACGAC	ref_3970_upstream	304	58	377	303	88	279	84	266	73	228
TAACGTGTTTTTTCAG	ref_3970_upstream	34	8	47	33	8	25	6	23	4	25
CGGTTCCCTTCTGAAG	ref_3970_upstream	94	26	80	71	27	65	28	50	24	59
TGCGTCCAAAGACTAC	ref_3970_upstream	185	48	234	227	29	155	68	188	35	149
TTGACCGTTCTGTATC	ref_3970_upstream	166	52	204	198	50	169	39	176	53	146
GTAGCTTCATCCCGCC	ref_3970_upstream	164	30	211	177	34	148	34	161	32	126
TGTCAGGCAGCACCCA	ref_3970_upstream	168	41	206	179	29	151	39	136	45	150
CTGTCTACATGGACGT	ref_3970_upstream	406	104	527	432	113	391	91	361	98	320
CAATGAGGCATACAAA	ref_3970_upstream	255	68	305	307	58	241	47	259	69	237
GAGCGGACGGCTAACC	ref_3970_upstream	289	75	385	339	71	267	58	317	72	292
TTTGACGCTTTCGTTG	ref_3970_upstream	168	42	231	146	54	166	62	147	42	143
GCGGGGTACCGTCCTT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTCTTTGTTCCTC	ref_3970_upstream	16	3	19	12	2	10	1	12	2	7
GGACAGCATTTATTAA	ref_3970_upstream	437	103	569	528	131	481	130	468	120	378
CATCAATTCGTGTGTT	ref_3970_upstream	421	114	523	500	144	429	128	409	161	391
GCTACCAACAATGCTC	ref_3970_upstream	222	57	270	248	41	192	52	206	71	169
CCGTCTCTTTTCGTAA	ref_3970_upstream	52	15	56	44	18	54	20	45	9	36
TTTGCCCTGCAAATTG	ref_3970_upstream	68	18	113	84	27	66	16	96	27	69
GGTGTTGCTCTTCACT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
GCCACAGGCAAGCTGT	ref_3970_upstream	57	12	67	67	23	44	25	54	18	40
TTGGTTTGGAGCCCAT	ref_3970_upstream	149	25	166	150	45	114	35	150	29	95
TTTCCGTAGTTATAAG	ref_3970_upstream	432	102	439	514	79	353	86	402	96	360
AATCGGTAGAATTTGT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTGCCTTGGACAA	ref_3970_upstream	455	100	590	550	127	472	123	455	87	366
TATGGGCTGTGGAAAT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
GGCTATTCATAGTAGG	ref_3970_upstream	48	12	69	62	11	55	11	43	9	41
ACGCGGAACAAATGGC	ref_3970_upstream	176	29	183	133	28	139	31	145	30	138
GGACTCTGCGCGCTCG	ref_3970_upstream	191	48	239	234	58	191	60	190	69	180
GCCCTGCACAATTACC	ref_3970_upstream	0	0	1	0	0	0	0	1	0	0
GCTATGTATAATATAC	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGTTTACGAATGG	ref_3970_upstream	136	28	179	144	46	145	40	129	34	114
GTAGGTTTCGGTATAG	ref_3970_upstream	65	21	78	69	27	47	17	46	24	35
TGTCCTGGAACCCTAT	ref_3970_upstream	257	70	307	280	103	247	76	266	83	248
CTTTGTTTAAGTTCCT	ref_3970_upstream	62	21	117	66	20	63	24	66	22	56
CCTGCGATTGTCAGTA	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
GCACTTAGTTAAGATT	ref_3970_upstream	122	26	176	151	38	155	36	118	35	111
GCGGACCTGCTTATGT	ref_3970_upstream	230	66	319	280	85	183	82	213	70	200
CACTCGAGTATTCACA	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
TAATTCGATATTACCT	ref_3970_upstream	69	18	124	84	27	70	18	89	24	65
CGTACTGAATACTATT	ref_3970_upstream	249	52	273	222	46	203	45	219	50	202
ACTCGGCACGGATGCA	ref_3970_upstream	30	2	27	17	3	26	3	18	7	20
TGTTTTCTTTGTTGGT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
AGACCGTGTTCGTTTG	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
TGAACTGCTCAAACGG	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGGGTATCGGCCG	ref_3970_upstream	386	88	483	442	86	394	85	380	106	373
GATTGACTGTTTACTT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
TGGTTCTTACTATCTC	ref_3970_upstream	1082	244	1424	1192	260	1070	287	1087	281	1052
CGGCGCAATCCTCTGC	ref_3970_upstream	230	48	301	227	67	246	63	194	67	206
CCCCCGGATGTGCACC	ref_3970_upstream	76	13	107	87	30	69	35	73	25	79
GTGCAGAACATGGTAC	ref_3970_upstream	630	166	813	708	169	619	160	671	183	572
CTGTACCGAACCATCG	ref_3970_upstream	21	7	19	18	9	24	7	18	4	16
TGAACGTGGATATCCT	ref_3970_upstream	402	104	560	512	111	416	109	437	112	424
CACCCAAATACCTATC	ref_3970_upstream	54	14	93	58	15	61	22	71	21	49
CCTTCTCCTCCTGGGT	ref_3970_upstream	119	30	153	148	26	137	24	104	32	95
GTGCGGACTTTCGTCA	ref_3970_upstream	229	61	302	206	40	210	61	223	58	210
TTCAACATTACCTTTA	ref_3970_upstream	277	90	331	311	91	230	80	296	99	216
TCATATACATATGGCT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
ATTCATCTAGTCACCC	ref_3970_upstream	160	39	187	181	28	144	50	167	52	133
CTGTACTGGGTTACTA	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
AAAGCTTCAAAATAAG	ref_3970_upstream	163	33	213	181	29	170	32	150	32	141
TCAACAGTTTATGTTC	ref_3970_upstream	293	87	361	327	105	276	91	293	73	275
TCGGTGCGAGGTTGGA	ref_3970_upstream	606	164	777	732	160	654	155	647	158	485
TTGCCGCCCTACTCTT	ref_3970_upstream	13	6	19	18	1	16	6	20	3	16
CTTTAACAAAATTAGG	ref_3970_upstream	542	116	670	587	125	519	117	609	128	505
TCATAAATTGGCTGCT	ref_3970_upstream	124	17	161	135	17	111	32	114	40	108
TAAAGGGTTAAGAGCA	ref_3970_upstream	308	64	427	345	59	310	75	259	78	278
TCCCCGACCCGGTTGT	ref_3970_upstream	140	90	198	191	81	151	89	170	92	139
GTAGTTTCCCCTCATT	ref_3970_upstream	91	29	119	91	33	96	32	122	36	107
CTCGGGGAGCCAAGTT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
AATCACTGTCAGCTTT	ref_3970_upstream	36	11	44	51	8	38	10	41	12	33
GTTTACCTCCGCGGTA	ref_3970_upstream	55	16	86	58	23	51	15	80	16	55
CTACCTGTTCCTGGCT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
GAGACCGTAGGCAACA	ref_3970_upstream	379	76	452	363	91	374	103	338	101	335
AGATCATCTTCTCCGC	ref_3970_upstream	329	78	426	407	72	346	68	389	83	302
ACTATACGGGCGGTGT	ref_3970_upstream	34	3	32	28	17	31	10	27	11	23
TTGAACCTTATCTGTT	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
GATCCACAGCGACGTT	ref_3970_upstream	151	27	136	113	21	99	27	81	25	93
GCTCGTAAGGGATCCT	ref_3970_upstream	55	12	73	46	15	53	7	53	11	39
GTCTTAACCAGTGTTA	ref_3970_upstream	71	14	80	88	12	67	27	79	23	56
GGGCAGGTTTATTCCA	ref_3970_upstream	228	51	307	287	55	217	57	219	63	216
ACTGTGAGCCAGGTGG	ref_3970_upstream	0	0	0	0	0	0	0	0	0	0
ATGTGCACCTCATGTA	ref_3580_missing	157	192	151	125	167	134	184	122	183	119
GGAACCGCACATTCTA	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
ATCCGTTTCAAGGCCC	ref_3580_missing	48	34	67	34	51	36	58	36	46	36
TGCAGGCTATACATGA	ref_3580_missing	27	35	30	41	33	26	34	23	42	23
CACATTGTATTTGTAT	ref_3580_missing	23	32	28	24	30	20	34	31	27	29
AGTCCTGCCCCTCTCT	ref_3580_missing	15	33	21	17	29	14	18	15	21	12
GAGATTATTGGCATTT	ref_3580_missing	4	12	5	5	10	7	3	8	7	1
AAGTACGCCTGCAGGC	ref_3580_missing	35	38	56	34	56	28	51	35	61	40
CATATTAAGCCCTTTT	ref_3580_missing	25	69	51	40	51	26	55	43	53	22
ACCACCTCCCCCCCGT	ref_3580_missing	15	45	34	17	15	22	21	28	44	20
CGGGTGTTTTTGGGCT	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
ATAATACCTCACTTCT	ref_3580_missing	12	36	29	19	19	26	37	23	33	24
ACCCATACTGAATGTA	ref_3580_missing	25	31	29	32	40	23	44	21	34	26
TAGCGAGCGCTAGGCA	ref_3580_missing	98	165	133	103	135	109	194	98	157	69
CATTACCCTCAGTTCC	ref_3580_missing	32	47	34	35	43	32	44	33	58	39
GTATTCCGAGTCCACC	ref_3580_missing	42	25	34	26	40	23	34	19	48	30
TCAGGGTTTAATTCTC	ref_3580_missing	4	12	14	9	11	13	12	10	21	6
GCATCAAATCTGGGCC	ref_3580_missing	255	318	314	246	357	263	360	227	405	227
TGCGTTGCACTATTCA	ref_3580_missing	23	16	15	13	28	6	22	10	10	10
ACCGCTGGGTCGCGTG	ref_3580_missing	41	55	57	58	71	49	53	36	71	37
TCGCGTACGCGCATAG	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
GTCAACAAACTCGGAT	ref_3580_missing	34	31	51	45	44	32	58	37	47	28
AACTTCAACTCTGCAT	ref_3580_missing	24	23	16	20	8	20	14	10	27	18
TTCCTTGGCATATTGC	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
GCTACTTCGGAGTCCG	ref_3580_missing	11	15	17	6	21	14	18	10	9	8
GTGCCTTCCACGGAGC	ref_3580_missing	7	11	18	13	4	10	14	7	9	10
ATATCTAACTTTGTTG	ref_3580_missing	16	21	17	20	17	17	30	17	31	19
TGTTTACTACGATTCG	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGGCCTAGAGTG	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
ATCCTTGCGTCAATCA	ref_3580_missing	17	21	13	11	14	8	19	14	24	11
ATTCTGCGCTTTTGTT	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
GATCAGATCTGGAATC	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
AGTTTGGCGGGCCATT	ref_3580_missing	20	20	18	24	29	19	25	13	23	17
CCACCGAAATAGGGTG	ref_3580_missing	15	72	15	23	69	11	85	14	56	19
TCCGGCTTAGTATACG	ref_3580_missing	12	10	17	12	12	7	17	10	22	7
ATAGACTGCCCTTTCG	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
CGTCTGTATACATTGC	ref_3580_missing	15	33	18	21	24	20	24	16	20	16
GCATTACGTGAACGAT	ref_3580_missing	51	63	51	42	55	43	46	40	60	48
TAGTTTAACGCAAGAT	ref_3580_missing	8	7	10	4	13	4	10	6	11	9
CGTTCATATCGACCGG	ref_3580_missing	33	35	39	35	40	23	50	26	56	35
CATTTAGATTCCAGTA	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
CTTTGACAAGTGCCGC	ref_3580_missing	27	33	36	19	31	19	28	18	32	20
CGATGCGTAGTAGGCT	ref_3580_missing	4	2	2	4	2	3	1	2	0	4
TTGTGTATTTTTCGCG	ref_3580_missing	52	62	51	36	44	45	82	22	84	33
GCGCGGGCCGATGAGT	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
CAATCTGGCGAATTTT	ref_3580_missing	11	12	12	19	12	18	12	5	11	7
CGCGGTCACCCCAAGC	ref_3580_missing	13	11	21	17	18	17	13	14	19	6
GACCCAACCCAGCATC	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
TTAGGGGGCAAAGTAC	ref_3580_missing	86	119	110	92	119	100	158	96	104	77
GGAAACAGCCATTATT	ref_3580_missing	10	28	24	19	17	24	26	20	42	12
TGACTTTAGCGGGGCT	ref_3580_missing	0	0	0	0	0	0	0	0	0	0
GATTACAGTCGTTAAT	alt_1700_RC	17	5	14	7	11	11	6	8	11	6
GCCGTTCATGCTCGTG	alt_1700_RC	73	49	73	65	73	81	63	60	70	60
AGTAGTCCTCTGTGCG	alt_1700_RC	27	33	23	24	33	16	21	16	17	32
TACCTTCCGCTGAGCA	alt_1700_RC	8	4	7	10	8	7	6	13	10	5
GGTGCAAATCGTCGTT	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
GTTTGTTGTTAAGGAC	alt_1700_RC	66	80	93	79	61	64	74	67	74	79
AATTCTCCTCTGAGCC	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
GACGTATCAGGTACTC	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
ACAATGTGGAGCTATT	alt_1700_RC	19	20	20	18	16	16	20	10	20	17
TCGCAGAAAGATGAGG	alt_1700_RC	157	128	176	139	142	158	130	126	132	141
TTCACCCCCTGCCATG	alt_1700_RC	264	235	228	221	270	221	252	216	264	177
CAGTCTCGACTCGAGT	alt_1700_RC	14	11	12	17	17	17	21	16	14	8
ATGAGCCTGACGTACC	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
AAAGGTACTTGGACCC	alt_1700_RC	36	31	43	45	48	34	37	28	44	36
GGCTTTTTTCTAGTTG	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
CAATAGTCCTGGGATC	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
ATTCGGGAACTCTTTG	alt_1700_RC	20	14	13	18	18	18	21	23	18	12
AATACTGATCGTAAGA	alt_1700_RC	14	14	25	23	16	16	14	25	10	17
AGTTTTATTTCTCGCG	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TCAGCTTTTTCCTAGC	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
AAGGCCGCTTTTTACA	alt_1700_RC	8	14	8	8	14	8	9	4	5	5
CATCAAAGAGTAACAT	alt_1700_RC	35	33	45	48	39	44	41	38	52	41
CATCGCGATAGTTCTG	alt_1700_RC	8	3	6	12	1	6	9	5	8	7
CGGAGTCATACCCGTT	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
CAGTAAGGCGGTAGCC	alt_1700_RC	129	105	134	123	121	137	152	128	125	121
GGTAGCTACGTTGTAT	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TCTTGCTATAGATAGG	alt_1700_RC	2	4	6	9	6	11	6	3	1	7
AACACGTGATGACTGT	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
GAGCCGGCGGGGCGCA	alt_1700_RC	22	32	31	33	43	30	48	28	50	29
GTCCGTCATGGCTGGT	alt_1700_RC	110	88	150	108	96	123	100	95	117	87
TGGTTACCCCGATCCT	alt_1700_RC	8	18	20	23	15	12	14	11	24	15
GATTGAATGTTTTGTA	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TGTGCTGAACGCCTGA	alt_1700_RC	81	68	114	90	79	95	73	76	66	74
GCTATCTCATTATACG	alt_1700_RC	31	27	23	13	20	24	23	24	30	21
TTCACCCCCCGCCATG	alt_1700_RC	0	0	0	0	0	0	0	0	1	0
ATCGTAATCTGTCTTG	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
GTTCTGAGCATTCGGT	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TACCCGCTTGTAGCAC	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
GATCGGTGGGCTCTCG	alt_1700_RC	43	41	46	35	53	36	41	40	40	37
CCCGCTGGCACTGTAA	alt_1700_RC	19	32	26	11	39	18	29	23	36	13
AGTTGAAGATCTCTTA	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TACAGTTTTTTACGTC	alt_1700_RC	93	83	89	90	72	76	86	68	82	65
CTTTTTGTTCATCGTA	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
GGGTCGACCCTTAGGA	alt_1700_RC	58	62	70	40	60	47	43	49	53	51
TAGAATAAGGACACTC	alt_1700_RC	33	20	43	36	30	29	41	21	25	28
ACTTTGCACATGACCC	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TGTCCTTCTCTGGCCC	alt_1700_RC	6	2	5	8	4	3	3	4	4	10
CCGTGATTTCCCATGT	alt_1700_RC	31	49	67	51	59	51	57	45	63	36
CTTCGTCCTGGTCACG	alt_1700_RC	19	15	15	8	16	20	24	15	24	11
TCTAGGGGTTATCACG	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TTACAGCACCGCCTTA	alt_1700_RC	0	0	0	0	0	0	0	0	0	0
TAGCATGCGACGATAG	alt_1700_RC	64	48	80	66	43	56	53	58	55	43
ATGCCAGCTCCATCTT	alt_1700_RC	51	50	54	61	42	49	54	66	48	51
GTTAATCGGATCAGTT	alt_1700_RC	43	35	41	46	36	49	35	32	40	23
CATACTCTCCAAATTG	ref_5199_reverse	40	58	50	56	58	41	84	43	89	56
GATGGATTGACAGCAT	ref_5199_reverse	44	65	65	49	57	48	56	40	78	54
GGATCCCGCGCGTCCG	ref_5199_reverse	7	6	9	4	4	4	5	4	2	3
CATAGTATAAGGCAGG	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TTTAGATATACTGAGT	ref_5199_reverse	22	48	19	22	35	22	37	25	42	12
TCGAGTCCCGAGCCAG	ref_5199_reverse	25	60	28	29	57	20	45	26	49	23
CGCCCCCCAATCTAGT	ref_5199_reverse	17	35	36	23	48	35	55	18	44	21
CGAACAACTCGCTAGC	ref_5199_reverse	53	68	74	40	74	56	64	38	58	53
GATGAACTTGTGTGTA	ref_5199_reverse	24	15	17	15	17	23	19	11	12	19
ATAATTTCTCTATACC	ref_5199_reverse	29	31	53	42	36	18	33	29	42	39
GGGAAGTATCAGTGAC	ref_5199_reverse	1	5	5	6	13	3	2	2	7	4
AAAAGGCTGGTAGCGA	ref_5199_reverse	21	35	22	17	33	16	36	22	40	19
GGTCCGGTTATCTGCC	ref_5199_reverse	16	21	18	11	13	10	30	17	24	11
CCCTCAAGGATGCGCC	ref_5199_reverse	33	27	34	17	26	35	44	28	38	28
TCCTTGACCTGTCGAC	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGACGACCTTATC	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TCTACCTCTTGGCGTG	ref_5199_reverse	31	18	21	20	23	15	27	19	49	16
GTATGCTAGTGGTTTG	ref_5199_reverse	18	24	14	16	26	14	28	13	31	18
TGATTTTTATTTGTTC	ref_5199_reverse	44	52	64	53	58	47	67	50	57	60
CCTAGAGTGCGCTATT	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TACCCGAGAGCAGTCT	ref_5199_reverse	0	4	1	0	4	3	4	1	0	1
GGACCAGGCTGTCGTA	ref_5199_reverse	101	141	120	109	126	89	137	110	151	82
TCTCGCGATCCCGTTT	ref_5199_reverse	48	40	65	59	67	43	70	53	74	30
TCGTCTTTTCCCGCTT	ref_5199_reverse	4	10	5	1	6	1	1	9	9	6
TATTAGACCAGTAGTC	ref_5199_reverse	18	27	20	18	22	16	26	13	39	16
CTAGGCAACATGTCTG	ref_5199_reverse	43	63	49	38	83	52	57	46	68	32
CGGCGTATTCATGTAC	ref_5199_reverse	24	30	34	21	44	20	48	27	55	15
TCGCTCCGTTGTTAAA	ref_5199_reverse	23	19	26	20	15	16	20	10	32	23
GGACCAGGCTGTCATC	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
CCGCAATTTGACCCAT	ref_5199_reverse	8	23	11	19	18	13	36	18	22	16
CAGTGATGCTCTTTGC	ref_5199_reverse	11	17	15	16	20	18	21	14	23	17
ATTTGGCGGGCCATAC	ref_5199_reverse	4	3	6	4	8	1	3	3	3	4
GATTATTTAAACCACG	ref_5199_reverse	41	61	46	34	49	42	55	36	56	24
GTTCTTGGCGTTACGG	ref_5199_reverse	25	25	18	17	24	22	42	27	20	19
ATGCCGTCTGGGTTAC	ref_5199_reverse	155	237	219	160	247	170	244	148	306	162
CTGGTATATGCTAGCA	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCCGTATCTCAGT	ref_5199_reverse	13	39	21	14	39	21	53	20	29	15
GCAAAGTGTTTTGTAT	ref_5199_reverse	41	57	56	31	64	35	62	38	75	42
TACGTTACCATTAAGT	ref_5199_reverse	11	11	9	2	10	9	18	9	12	2
GGCTCTTCTGCGGAAA	ref_5199_reverse	35	59	40	34	55	31	56	31	38	40
CTGGGAGGGACCTACT	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TGGTATGGGCTCACGG	ref_5199_reverse	23	41	34	31	43	29	42	24	44	36
CCGATGCCGGGATATT	ref_5199_reverse	3	14	3	6	19	5	20	3	25	3
ATGTTGCGATGTAGTT	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TGTCAACCAGCACCGA	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
GGTGCTTCATTTGAGT	ref_5199_reverse	34	50	35	34	45	25	30	20	73	31
TCGACTCCTACCCTCA	ref_5199_reverse	34	71	59	28	70	48	94	33	83	40
AGTAAGTAAATCCGCG	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCATTGGCTAGTT	ref_5199_reverse	4	6	8	4	20	10	17	5	6	9
ATCACAGGTTAGGTAC	ref_5199_reverse	16	17	31	20	33	11	21	12	25	15
GTTTCCCTTGTCTGCT	ref_5199_reverse	9	15	13	11	16	14	18	6	15	6
TTTTCTCGGCATCTGC	ref_5199_reverse	32	35	26	32	29	20	28	16	43	25
TCTGAGGGTATGTCAA	ref_5199_reverse	9	18	11	9	14	11	15	14	15	12
CCTGACGACAGCACAG	ref_5199_reverse	1	0	1	1	4	1	1	2	0	1
GGAAATGACCCCAGTC	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
CCAAATTACCAATCAA	ref_5199_reverse	20	49	34	23	49	24	69	30	48	22
GGGCGAAGCATGAATA	ref_5199_reverse	82	106	111	70	97	86	112	59	147	59
CGCCCCTAAAGGATGA	ref_5199_reverse	19	26	16	21	29	18	26	16	31	23
CCATGGTCCATGTGTC	ref_5199_reverse	44	43	61	34	44	41	54	33	73	31
TTTTTGCTGTCCGTAC	ref_5199_reverse	50	73	55	60	74	55	77	49	78	49
AGCTCCTCGTTGCGTG	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTACGGACCTTT	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
GCTGCCTTGGGCTCTA	ref_5199_reverse	45	60	70	64	78	55	75	37	74	36
AATTACCGCTCGGTAT	ref_5199_reverse	24	39	36	32	40	41	54	39	43	35
ATTTAACCGCTTCTGG	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
ATTTTTAATATACGAT	ref_5199_reverse	8	9	10	8	7	11	14	9	12	8
GAAACTCCCGTTACTG	ref_5199_reverse	10	20	9	8	24	8	13	4	6	6
CCGGCTACGCGGTAAA	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
AGTCTGCGGGCCCATA	ref_5199_reverse	15	16	22	14	22	13	27	24	20	26
ATCTCGTATGAGATCC	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
GGGTTAGACGTTATTG	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCATTCCTGATCT	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TCTATGAGTTTGGTAA	ref_5199_reverse	2	7	1	5	5	2	3	2	7	1
GGCGTCTGCTCTAGCC	ref_5199_reverse	0	0	1	0	2	0	3	1	1	0
GTCCCTATTGTTCCTG	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
AATGTTTGCTGATCTC	ref_5199_reverse	20	32	19	19	26	23	37	18	34	21
TCAATTTGGTGGGGCG	ref_5199_reverse	68	77	59	67	71	76	89	49	83	70
GCAGTTTCAATTTGGC	ref_5199_reverse	7	11	11	5	18	7	15	7	7	7
TATGATGCTTTAGTTT	ref_5199_reverse	10	14	15	11	15	13	19	7	24	7
CGTCACCCCCGATGTC	ref_5199_reverse	11	28	21	21	35	18	24	16	30	14
TGTGTGATGCGCCGGT	ref_5199_reverse	38	51	62	31	34	27	60	24	58	27
AAATGTTTAGTTCTAA	ref_5199_reverse	19	24	20	19	22	20	24	13	30	31
TTTTTACTCTTATGTC	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTGCATAATTCCT	ref_5199_reverse	6	11	5	6	13	7	17	3	13	3
ACATTCCTGGATAGTG	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
GTGTACTTTAACCTTC	ref_5199_reverse	0	0	0	0	0	0	0	0	0	0
AAGGTGTTAACCCCCG	ref_2047_reverse	73	58	89	97	69	79	60	94	68	68
GGCGACAACCGCATGA	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GACGCTCTTCCGCCTG	ref_2047_reverse	9	11	3	6	1	2	3	7	1	6
GGTCCGAGGGACTCGG	ref_2047_reverse	35	28	37	27	35	32	38	32	38	24
TGAACCCGCCCGACAT	ref_2047_reverse	21	15	21	19	18	20	15	15	11	26
TGGTCTCTGTGCTGCG	ref_2047_reverse	19	40	35	26	23	28	24	32	29	27
TTTTACATAGTCTTAT	ref_2047_reverse	104	85	139	127	68	116	94	99	57	97
TTCGTGTACGCGCCTT	ref_2047_reverse	49	42	71	60	51	51	40	51	40	48
ACTATTTAAATTCCCA	ref_2047_reverse	66	36	92	66	48	68	50	70	42	65
TCATGCGCCTCCTCAT	ref_2047_reverse	6	2	2	2	2	4	0	0	0	7
GGGCGTAGCTCGGTAT	ref_2047_reverse	30	19	34	36	16	29	28	35	22	13
CCCAGTGCATGCGGCG	ref_2047_reverse	14	19	18	22	16	18	20	19	17	11
GTTGGGAGCGCGAGTA	ref_2047_reverse	10	12	11	16	7	16	15	14	11	8
TTTCTTTGTCGTTGTG	ref_2047_reverse	83	81	115	99	75	107	69	83	61	90
AAGATTGGACGTTTTA	ref_2047_reverse	11	16	16	11	8	14	5	8	14	10
CGTAATCCGGCGCACT	ref_2047_reverse	89	70	89	71	67	91	59	84	60	82
AGTACTTCTTTTATTA	ref_2047_reverse	15	6	14	8	14	5	12	5	10	16
TGGTGTGTTGCATACT	ref_2047_reverse	8	9	9	11	10	8	4	7	14	10
TGATATAGCGACAGAG	ref_2047_reverse	8	6	8	14	2	5	6	4	7	2
CAAGGTCCTCTAATCA	ref_2047_reverse	93	58	134	87	62	83	76	80	69	64
GAAAATAAGAAGAGAG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
CGAGCCAGTTCGATTC	ref_2047_reverse	6	8	14	7	7	3	5	12	13	2
AACGTACCAAGTTTAA	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
AGCGTTTAAGTCGTGG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GTATGTGGCGCGATCT	ref_2047_reverse	0	0	2	1	0	0	1	0	0	0
ATGCGGCTGAAGGGCG	ref_2047_reverse	18	24	31	25	19	21	17	28	21	25
TACGGCACTATTTAGG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GACTGCAGCTTGTACG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
ATCGTGCTTTCAATAT	ref_2047_reverse	8	10	16	13	15	14	11	3	11	12
GCTAATCATGTATAGG	ref_2047_reverse	45	43	49	61	56	53	58	49	46	43
TGTACAGTAAGTGAAG	ref_2047_reverse	44	29	56	32	29	42	21	39	24	34
AAATTAGCGAGTAGTC	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GTATGACAAAGCAACG	ref_2047_reverse	12	10	11	9	4	5	6	12	3	12
CGTCGGCTATTACACC	ref_2047_reverse	57	31	52	54	36	38	29	30	47	38
TCATTCCCGTTAGTAT	ref_2047_reverse	52	39	60	58	57	35	54	54	67	43
CCTATCCAATTTGTGT	ref_2047_reverse	19	14	27	23	19	18	14	11	13	14
ACCACGTCTGTGGATT	ref_2047_reverse	9	4	21	11	14	13	19	6	20	7
AACGCAGTTGACGAGA	ref_2047_reverse	21	9	25	11	3	14	8	16	17	10
AGGTTCTCCAGTCCAA	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GTAGCGTGCTACCCTC	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GGATGGGCTTCCCCAG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
CCCGCGGTAATTATTG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
TGGCCGGCTTAAGAAT	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
TTTGGGGATAGCTAAA	ref_2047_reverse	45	30	59	50	36	40	41	40	26	47
TGGCTTATGTACAGCG	ref_2047_reverse	33	22	19	28	19	37	24	25	20	33
AGTTCTTCGCAGCGGG	ref_2047_reverse	11	11	15	13	5	10	5	17	12	10
ACGATGGTCTGTATTT	ref_2047_reverse	68	62	77	70	58	67	66	74	43	53
TCTTGTCTCCGCGACA	ref_2047_reverse	7	9	13	11	7	14	9	10	10	13
CTTGGATAGTCACTCG	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GTGTCCGTTTCGTGAT	ref_2047_reverse	246	176	285	250	146	237	208	191	213	202
CTAGCGGCCGAGCGAT	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GCAGAGGATTGATGGT	ref_2047_reverse	59	32	61	63	45	38	31	57	42	39
CGTTCAAAACGATCTC	ref_2047_reverse	40	20	40	54	17	46	36	31	30	35
GCCACTAATATCCGCA	ref_2047_reverse	11	2	10	10	4	8	1	7	8	2
TCTTTATTCATTATAG	ref_2047_reverse	13	12	17	21	12	13	12	20	10	15
CCTCATGGCCGGGAGC	ref_2047_reverse	40	37	48	60	33	46	35	57	26	42
GTGTCGGGAGATCTCC	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
TTAGCAGACCATTTCA	ref_2047_reverse	16	5	16	15	8	13	15	9	13	10
TGGTGGGTGGAGGGCT	ref_2047_reverse	8	4	14	17	8	10	3	10	4	14
TATGAAGACGTCTATT	ref_2047_reverse	25	14	19	21	16	17	23	23	24	17
TTCAGCTTTCTCAACC	ref_2047_reverse	1	1	1	1	3	1	0	1	1	0
CGTATGAATCTCGAGC	ref_2047_reverse	14	16	19	16	13	13	5	15	17	20
TCCCGGCCAGAACACC	ref_2047_reverse	26	9	30	24	17	19	18	29	19	20
TGACCCTTTCGTTGCT	ref_2047_reverse	55	48	61	58	45	48	40	52	43	44
TAGTGCGGTTTCTTTG	ref_2047_reverse	149	118	195	162	118	142	131	141	145	123
CGCAGTTCTCTCCTCT	ref_2047_reverse	64	45	74	74	62	101	71	64	70	65
AGGTGAGTTTGTATTC	ref_2047_reverse	43	31	59	50	18	50	31	40	43	34
ATCACACGGGGATAAG	ref_2047_reverse	33	13	25	23	24	27	17	30	22	19
TCGAATCGCGTGAGCT	ref_2047_reverse	20	12	20	19	18	16	12	9	29	15
TCTGCGGTAATCATCA	ref_2047_reverse	31	13	23	35	30	33	25	23	32	20
TGTCGGGACCTGATTT	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GCAAGGCCTGGAATGT	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
CTAGTTAAGGGTTTCT	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
AATCTTACAGACCGTT	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
TGCTCCATCATTTCAT	ref_2047_reverse	58	28	50	64	46	45	39	43	38	33
CAATCCCCTCGACAAA	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
TGTGGCGCTTGCCCTC	ref_2047_reverse	30	24	39	35	33	31	23	32	19	31
CAACATATGAGTGTCA	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
CGGATGCCAGTTAATT	ref_2047_reverse	3	15	6	6	9	6	6	2	7	1
GATTACATAGTGAGCC	ref_2047_reverse	3	4	4	1	4	5	4	4	5	5
CTAGTGCTTTATTTTC	ref_2047_reverse	44	17	28	34	14	21	15	28	31	19
TTGACCCGATAACTCC	ref_2047_reverse	3	4	3	3	7	3	9	3	8	3
TATGGACCGTCACCTT	ref_2047_reverse	89	76	130	80	68	86	82	93	82	82
GGCCTCATACGGCCTG	ref_2047_reverse	81	74	85	86	47	82	46	77	65	87
TAGAGCTATCTCTTTC	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
GTGCCTAGCCGTGTAT	ref_2047_reverse	8	12	17	20	6	14	8	11	18	17
TAGGTGGGCACGTAGC	ref_2047_reverse	0	0	0	0	0	0	0	0	0	0
TGAGGTAAAAGCCGAT	ref_2047_reverse	24	14	39	24	16	17	6	25	26	13
TGTTACAGGTCGGGTA	ref_2047_reverse	31	23	32	32	16	28	16	17	11	13
ACCGGAATTTATTGGA	alt_4553_RC	73	74	89	93	108	67	78	82	101	70
CGCTGCATAGGATTGA	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
CTTCCCTCCTCTTTTC	ref_4553_RC	36	36	50	44	39	23	18	30	28	33
TCCGGAATAGTCCCGG	ref_4553_RC	42	33	43	37	39	42	42	30	42	46
TCAATTGCGGCTTCTT	ref_4553_RC	25	34	47	41	30	33	32	39	38	22
CGCGTTTTGGCCCTCG	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
AGGTTCTTAATTCTTT	ref_4553_RC	17	14	19	38	21	21	23	24	23	13
GGGGCGTATGCTGAGG	ref_4553_RC	3	6	15	6	8	6	10	6	9	9
TAGTCCCCTTTCATAG	ref_4553_RC	16	17	34	32	24	29	24	35	23	22
TCACGCTGCGTTGATC	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
CAGTGATTGTTTTTAT	ref_4553_RC	4	3	6	1	5	6	9	6	5	1
TATTCCGTTATTCCGT	ref_4553_RC	21	23	26	16	24	20	16	23	23	21
CGCCAGCTGGCTGTAT	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
AGTTCGGGTTATTTTC	ref_4553_RC	12	9	25	12	10	12	18	5	16	14
CCTGCGCCCTAAAATT	ref_4553_RC	74	116	103	102	84	96	90	76	83	75
GTCGTAACAAACGGGG	ref_4553_RC	27	23	38	36	32	42	27	27	48	24
GCTCGAAACCTTCTAC	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
GACCGCTCTCGTTGGG	ref_4553_RC	30	28	23	28	23	18	23	32	25	22
TTATAAGCGCGTTTTA	ref_4553_RC	30	32	39	28	24	27	31	29	40	24
AAATAAGTTGTACATC	ref_4553_RC	47	61	60	46	45	50	73	34	46	30
ATAAAGGGTTTAACGT	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
GTATACGGTTAGGGTT	alt_4553_RC	57	27	45	49	38	39	38	35	39	38
AGCTCGGCATTCAGTA	alt_4553_RC	230	233	320	329	234	249	253	236	243	215
AGGCGCTCGGTCACTT	ref_4553_RC	61	49	71	55	45	48	37	35	57	55
ATCAAGGGCTTCGTGC	ref_4553_RC	11	14	17	14	19	11	15	7	11	19
GTCTGCATATATCAAA	ref_4553_RC	71	101	97	95	94	79	95	75	89	79
AGTATTTCGATATGCT	ref_4553_RC	21	14	26	21	15	18	10	12	11	19
GTCTACCACATAGCTA	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
GCTTCTTCCCGGGTAA	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
GTGAAAACTGCGTTTG	alt_4553_RC	70	46	80	61	50	72	68	49	49	52
ATAGTCTCACACCTGT	ref_4553_RC	31	30	40	33	50	25	50	40	45	37
ACCCTTGTCGATGTCT	ref_4553_RC	33	31	32	38	24	28	21	28	26	19
ACCAATGAGATTGGCG	ref_4553_RC	0	0	0	0	0	0	0	0	0	0
TAGAACGCGAAATGTC	ref_1861_missing	11	7	8	4	5	3	11	1	10	6
AGTGCGTTCAGGCGGT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CCATGTGATGAAGGCT	ref_1861_missing	4	1	2	1	4	7	3	2	5	3
GTGCAATCATCATTTG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ATTAGTATTTCGCCAG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CTCACGCACGGATATA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TACACAGTCCCTAACA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CATGCTGGGCAGTGTT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TCCAGTATGAAGAGGA	ref_1861_missing	4	10	12	8	12	10	10	2	7	3
AAGAGTCCTTGGCCCC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TGGGGCCATTTTAATC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CGCGCTGTCATTTTTC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CGTCACGGCAGTAATT	ref_1861_missing	1	1	1	1	3	2	4	2	0	0
AATCGCCTCTGATCTT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
AACCCGCAATCGGTTT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CTTCAACTTGCTAATA	ref_1861_missing	3	13	8	8	10	9	12	8	11	6
TGCTCCCCCAAAGTTG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TATTGATTCACATTTC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CATTTTCCCTTTGTTG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TCCTTTCCGCCTTCGG	ref_1861_missing	6	6	5	7	17	6	17	5	26	7
CGTTCTTATCTCTAGA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GCGAAAATGGCTATGG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GCCTAGTATACCGAGC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CCAAGACTGTCCCACA	ref_1861_missing	1	5	3	2	1	1	1	1	9	0
TTTTCATAACTTTCTG	ref_1861_missing	7	12	5	2	8	10	10	4	11	3
AAACTAGCCGTAGCAA	ref_1861_missing	19	30	19	14	38	18	38	11	38	16
TTCGTATTCATCTCTT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GGTCAAATCTTAACAT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ATCTCTTATTCCCAGT	ref_1861_missing	18	38	19	14	35	13	36	8	42	14
TTGTTTGTCAGAACCC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GTATATGCTTTCCTAG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
AGCTAATGGGAACTGA	ref_1861_missing	5	1	2	0	0	0	1	0	2	0
GATCCTGTTCACCATC	ref_1861_missing	1	6	4	11	5	2	7	2	7	1
TACTGGCCGTCTAGGG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ATCTAACGGGCTTGCT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TAGATTTATTGGCTTG	ref_1861_missing	9	19	14	12	9	9	14	15	22	3
GCCAAACTCCTATTTT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GACCGTAGACAGGGGA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CTCCAGACTCTCCTCT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CCAGTTAGCTGTTATT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TAGAGTTAGGTTTCGA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CGACTTTATCAGGAGA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ATCGTATATTGGTACT	ref_1861_missing	2	5	1	2	2	3	1	0	9	0
GGCACGTATCAATTTC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TGACAGGTCGTCAATA	ref_1861_missing	18	14	18	12	16	13	27	20	19	9
TCGAATTCTATCTGCT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ACGCTTTGTCCTGGTA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TGGTCAAGCAGGACAC	ref_1861_missing	3	4	4	5	5	2	4	8	3	3
AAAACCCTTGATCACG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CAGCCTAGTTCGCACT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TCAATCGCATTAACTT	ref_1861_missing	8	12	11	18	13	12	18	9	30	9
CTTTATGTATAGTGTG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GCCTTCTATTCCCCGA	ref_1861_missing	4	7	8	4	13	10	14	5	17	2
AAGCCGCGCTGGTGTA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GAACCGAGAGCTATGT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GAAGAACGGTCCTTAC	ref_1861_missing	10	25	7	13	25	16	16	11	35	15
CAATCTTGGAGCGCCT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ATTGGGAACCAGATTC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CTCCATTCAATGTATC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GCCTATGTTAGGGTCC	ref_1861_missing	15	34	12	13	36	13	38	16	27	9
CCCATAGATGATATGG	ref_1861_missing	5	10	5	4	6	5	6	1	9	2
CTTTGTCATGTACGCT	ref_1861_missing	0	0	1	0	0	2	3	0	2	0
AATTCCGCTTCTCAGG	ref_1861_missing	6	9	2	4	7	2	6	2	6	3
TTGTTTAGTCATTTCG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CGCACGTTTTTATCGG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ATGTATAAAACCTAGA	ref_1861_missing	9	16	6	11	18	6	21	7	12	4
TGTAAACCAAGTTCGG	ref_1861_missing	3	5	5	1	5	4	3	5	1	4
CAAGGTGTTTCGTTGG	ref_1861_missing	2	10	4	7	10	2	17	4	14	5
CAGATCTTGTTACCCG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTTACTCGTCTT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CGCCTATGCTCGTTTA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ACTTTCCTCCACACGC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ATTGAATAGGAAACTA	ref_1861_missing	5	6	8	3	13	3	6	2	6	3
TTAAGCGAAGTACGCG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TAACGGATTAGAGCCA	ref_1861_missing	0	0	0	1	0	0	1	0	0	1
TTATAGTGAGTCCTGA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
AAGTCGACCGTCTACT	ref_1861_missing	1	3	4	0	2	0	1	0	4	2
GTTATGGCAGCAGTCA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CTGGGTTCGCTCCACC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TGTGCGTGACATAACG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TGTCGGGTCGACGATG	ref_1861_missing	9	22	12	7	30	9	34	17	23	6
CCCTTTAGAGGGTGGT	ref_1861_missing	14	24	17	9	18	19	5	12	22	15
TAGGGATGTGAGTGGG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TAAACTTGAGCGTGCA	ref_1861_missing	17	19	8	9	19	11	22	7	30	14
CGCATCCGGTGTGCCC	ref_1861_missing	0	12	3	0	6	2	6	1	8	2
CGTCTATTTCTAGAAC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
ACCCACTCTTCCATCT	ref_1861_missing	10	22	9	11	18	5	15	13	12	6
TCAGGTGACACGATTC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GGCTGTGGTGTGCGAG	ref_1861_missing	5	19	11	11	13	7	10	8	13	10
AAAGATCTACGTTGGT	ref_1861_missing	17	16	21	16	16	17	15	14	20	10
CGGATCAGGTTCCTAT	ref_1861_missing	12	22	13	11	40	14	27	6	29	16
ATGAGATCGGTTGGCA	ref_1861_missing	5	14	10	2	12	8	13	4	9	7
AAAGGGACATAGTCGT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GTTCCTATATTCCCGA	ref_1861_missing	17	17	21	20	25	12	19	13	30	22
CAAGTGATTGTGTCTT	ref_1861_missing	24	63	14	32	42	34	42	15	62	24
ATATGCGTTTGCATGC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TACTATGGTCAAGTGA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TTGTATGGGCCGGTAA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TCTGTTTGTGCCTGAG	ref_1861_missing	3	10	15	3	4	9	12	5	8	8
AGGCGTGGTTGGGCTC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CACTATTGTACAGAAG	ref_1861_missing	14	23	6	8	11	9	24	8	15	6
AATAAATCCTTTGCGC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CGACTTTTATCTTTGT	ref_1861_missing	17	27	19	12	27	20	39	23	32	28
TTTCGCAGTGTCTGCC	ref_1861_missing	6	12	5	3	5	4	12	5	4	4
AAGGCTTTTTCTAGTT	ref_1861_missing	16	32	27	20	36	15	34	19	32	13
TTTCCGGGGCGCCCGC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
AAGTTCCGTGATCTGA	ref_1861_missing	5	9	4	3	7	2	6	7	12	5
CTGCGCCGGCAATAGC	ref_1861_missing	11	24	13	9	16	3	22	6	16	8
TGTTCTGCTTTTAGTG	ref_1861_missing	11	8	7	5	10	7	24	10	11	4
ATTAATTGGACTCTGT	ref_1861_missing	1	1	7	1	3	0	4	0	2	1
AAGGTTGATCGGTTTG	ref_1861_missing	3	0	4	4	6	2	8	1	3	1
TTACGTATTAACATTC	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
TTTATCATTGATTGCC	ref_1861_missing	9	17	4	8	7	2	15	7	11	5
CTGGCTAGCCAGGGAT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GGCGGGTTACCAATTA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
CTCCCCGGTGTCTCGG	ref_1861_missing	9	29	5	6	11	9	16	10	23	4
TTCTATGCTTAAATGA	ref_1861_missing	36	51	37	36	66	36	67	26	64	32
GTAGGGTATCAAGTTT	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GAATTATCTTTCTTAA	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
AGTCAGCTGCCGCAGC	ref_1861_missing	6	18	14	9	10	7	14	8	12	12
AAGTCAGTCGGTACTG	ref_1861_missing	13	25	9	9	23	8	22	7	16	12
GATTTCCTGCTTGGTG	ref_1861_missing	0	0	0	0	0	0	0	0	0	0
GCATTTATGGCTTCCG	ref_1861_missing	2	1	3	1	13	5	14	2	15	3
CGGTCTGTCGAGTTAT	ref_1861_missing	21	38	22	22	39	24	38	30	32	21
GTGACTTATTTCAGAC	ref_1861_missing	20	37	12	8	29	17	35	19	43	10
TAATATCTCTGCGTTT	alt_266_negative	12	13	14	14	3	11	13	6	16	5
ACCTCTTGTGAAACCA	alt_266_negative	2	4	1	7	6	1	10	5	7	2
TCCGGTCACGTGTTCA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TATAAACGGTGTCTAG	alt_266_negative	15	12	14	19	11	12	29	7	21	13
CTTACAGCGACGGAAC	alt_266_negative	11	11	16	12	19	7	29	14	13	9
AAGTACAACTCGCGAA	alt_266_negative	23	43	24	18	37	22	57	14	45	13
TGGTATTAGACGATTT	alt_266_negative	15	19	24	21	23	20	22	13	29	13
TGCTGAACGCGAGCAA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CCAGCCAGGCCTCACA	alt_266_negative	2	8	0	2	8	2	6	5	5	0
GATTTATCGTTTGTAT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TACAGCGTAATTGTAT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CGGCGCGCCAAAGTTT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
AATACGCCATTGAACG	alt_266_negative	12	23	8	17	22	21	32	9	25	20
AGTTTTCGGTTGCATC	alt_266_negative	1	2	0	0	1	2	3	5	2	4
CTAGCTAGAAGTCGGA	alt_266_negative	0	0	0	0	0	1	0	0	1	0
GTGAGTCCGCTCATGC	alt_266_negative	11	27	19	14	26	12	22	10	14	12
CCGCCACGGGGTACGA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GTCAGTCTGTGCCCGA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CTATATACGCCGTGTT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GCGGCCTTGCTCACTA	alt_266_negative	5	4	4	3	7	7	9	5	9	5
GTGTAGGGCACTTCGA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GTCCTTTGCTAGGTGG	alt_266_negative	0	2	0	5	5	3	1	3	3	0
TTTTGATGGATCGGTA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
ATTACATTTACCGCCC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GAATTAGATCGTGATA	alt_266_negative	7	5	6	2	12	5	8	3	6	4
ACTTGTAATTATTAGC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CATTGGCCGTGAGAAC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TCTTTGCATCGTCTGT	alt_266_negative	5	14	14	2	5	7	18	5	10	6
AGTGTGTTTTATTCTG	alt_266_negative	25	59	33	22	65	38	72	31	66	27
ATTCTTCCCGCAATGT	alt_266_negative	43	48	41	28	53	24	54	26	45	46
CACCGTCTTAGCACCA	alt_266_negative	4	21	5	10	21	10	10	3	20	7
AAAGAGTTCTGCCCGA	alt_266_negative	32	65	44	32	49	43	61	33	68	31
TCGTCGTGAAGCCGGA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GGCGCCCACCTGTCTT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TAATTGGCGCACGGCC	alt_266_negative	23	37	23	30	32	14	38	22	34	20
AATAACTTTCCTGGCA	alt_266_negative	0	1	2	5	3	2	2	0	4	0
AGTCGTCATAGAACCT	alt_266_negative	15	18	18	8	22	8	25	8	26	8
CCCATGCAACGAGTAG	alt_266_negative	8	9	7	10	4	2	13	7	9	4
TTCATCGCCATACTTC	alt_266_negative	7	9	4	7	5	6	8	7	16	4
AGTTGTGGATCTTACA	alt_266_negative	13	17	16	13	17	9	18	15	15	8
TACCTCGCGCGCTTTC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
AGGGTAGCATGGCCAT	alt_266_negative	3	4	2	6	8	9	11	3	7	7
AGCAGGTTCTTTTAAG	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CAGCATGAGTTAAGCT	alt_266_negative	22	38	18	20	56	13	51	14	35	17
TGGTATTCGCAATCGG	alt_266_negative	5	12	12	5	20	10	12	8	10	5
AATTATACAAGCGTCG	alt_266_negative	4	7	7	6	12	3	10	4	8	5
GACTTGATATTCTGTC	alt_266_negative	5	12	13	8	18	8	16	5	19	10
TGTTTTTCACAGGTGT	alt_266_negative	2	2	1	3	3	1	1	2	1	3
TTTTAAGATTTGTACT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
ATTCAAGCGCTTAGCT	alt_266_negative	2	3	6	2	2	2	3	1	11	0
TGTCTTTCCCTCGTGA	alt_266_negative	6	3	2	3	5	3	3	6	10	4
TTGACGCCCTGGTATT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GGCCAACCAGAGTTGA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
AAGTACTAAGTTCCCG	alt_266_negative	0	0	0	0	0	0	0	0	0	0
AATAGAACATTGGCTA	alt_266_negative	6	14	10	11	13	6	13	4	18	10
TTTCTGTGCTTATCCA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TCAGTGTGTCATTCCG	alt_266_negative	18	20	21	21	25	13	31	18	27	12
AGAATCGTACCACTAC	alt_266_negative	83	118	117	85	121	92	175	93	143	78
TGGGGTTGTAGTGCTT	alt_266_negative	21	45	29	28	70	32	47	31	63	21
ATAGTTATTTACGAAT	alt_266_negative	5	14	11	17	15	5	10	5	14	9
AATAAGGTAAGACTGC	alt_266_negative	22	32	27	21	36	24	31	20	45	17
ATAGTTAATTTCCTAT	alt_266_negative	2	2	9	8	7	3	3	8	3	2
GGCGACTCTGTGTAAT	alt_266_negative	16	18	31	13	20	20	20	8	15	14
TGCACTGGGCTTGCAA	alt_266_negative	1	7	3	2	4	1	7	2	5	3
GCCTCTATAGAAGCGC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TTAAATTTATATTGTT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CGCGGCGTCGCCATAT	alt_266_negative	24	20	12	19	12	18	13	17	16	16
CTCCTCCTGAACCATT	alt_266_negative	2	5	1	2	3	1	5	1	1	1
TCTAATTTACTATAGT	alt_266_negative	3	1	3	2	1	0	2	0	6	0
GTTCAGTCATCTGCTT	alt_266_negative	9	7	5	7	14	6	5	6	3	6
TCAATGTGATATGCCG	alt_266_negative	8	25	15	9	11	9	20	6	23	10
CGGGGGACTTAAATTG	alt_266_negative	6	5	8	6	16	8	18	9	13	2
TCACATTTGAGATTAG	alt_266_negative	2	10	7	7	6	4	4	6	9	5
TAGAAAGTCATGAGGT	alt_266_negative	10	23	10	11	31	11	22	16	20	5
TGGTTTGTCTACCCTA	alt_266_negative	13	16	13	6	19	13	13	15	15	13
GCGCAATGGTGAATAC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GAAATTCAAGGGTGCA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TAACTCGCTATATTTC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GTTCAGGGAAATTCTT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
AGAGATCCTTTAACTG	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CACACGGTGCATCCGA	alt_266_negative	8	15	11	9	7	6	16	2	9	4
GACCTGATTGCTGCGG	alt_266_negative	23	38	20	24	41	21	41	15	38	15
TCGTATGCTTCCGCTT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GTCCTACTAACCCATT	alt_266_negative	10	10	8	4	13	9	16	5	10	12
GTGGGGTACTAGAACA	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GCCCTCCGTACCCCGC	alt_266_negative	8	8	15	13	17	11	19	11	16	4
CGCGCTTAACTCTTGC	alt_266_negative	1	12	3	3	12	1	7	1	9	1
ATCTTCTTGCCTCGAT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TGCTGTTCTTGAGATG	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TTTTTTACAAACTCGC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CGAGTTCCTGTGGTTC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GTCCTGTCTGGTGTAC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
ATATTTATCTCGTTCA	alt_266_negative	3	8	8	2	5	3	14	4	10	2
TGAGTTTTATCTTCGT	alt_266_negative	10	8	19	13	12	10	23	9	17	11
CACACTTAATTCGAAT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CAACGATTTGAAGGCT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GCAGACTTTCCATCCC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CGTTTTTGCATAAATT	alt_266_negative	0	0	0	0	0	0	0	0	0	0
TTTTGAGTCTCATCGG	alt_266_negative	3	8	2	5	9	6	10	6	8	1
CCGGGGCTTGTCATCC	alt_266_negative	0	0	0	0	0	0	0	0	0	0
CTGAGAGCTTAACGTC	alt_266_negative	7	8	9	6	13	8	14	10	14	3
GCGAACCAATTCTTTT	alt_266_negative	5	3	5	1	8	1	5	3	7	6
GCACGTATTACCCAAG	alt_266_negative	32	43	24	27	57	31	38	19	45	26
GTAGTCTCCAACCATC	alt_266_negative	22	54	42	34	61	34	47	34	61	29
AGTAATCATTTATACG	alt_266_negative	0	0	0	0	0	0	0	0	0	0
GATGTTGGTTGGTGTT	ref_2789_missing	17	22	11	21	26	12	42	23	26	14
CATGTCAACTTCCTTG	ref_2789_missing	14	40	24	10	23	26	26	10	42	7
GTATGGTTCGGCTAGC	ref_2789_missing	3	4	5	1	1	2	2	3	6	2
AGGGCCATTCGGTTCT	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
GACGTTTATCTCAGAT	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
GCGAGGTCCGCGAATT	ref_2789_missing	15	35	22	23	49	12	36	17	50	15
TCAGCTTGCACAGCTT	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
AAGTTAGTGTTATTCG	ref_2789_missing	7	12	8	10	14	4	19	5	27	9
TGAAACTTCTAGTTTT	ref_2789_missing	14	36	27	17	45	15	47	7	48	16
ATACCTCGGGAATTCG	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
ATCGAGGACTTCCTGC	ref_2789_missing	15	10	6	9	16	14	27	6	21	6
AATTTAGGTCCTCAAC	ref_2789_missing	11	24	22	9	27	6	29	8	34	7
CGCTTTTGACAGCGTG	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
TTCGTTGGTTCTCATT	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
TGAAGACCCTACCTAA	ref_2789_missing	3	7	2	0	4	3	12	5	8	3
CGGCCTCCGTGTTTAC	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
ATTAGCCTTGTTTAGG	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
TGAGAGTGCATGATGG	ref_2789_missing	7	19	8	17	20	11	25	10	16	12
TGGCTCTCATTACACC	ref_2789_missing	22	51	27	18	74	50	80	39	84	20
TATTTCGGCGGCTTAC	ref_2789_missing	4	17	2	0	16	4	18	3	18	3
GATATCAGCCCTTCCC	ref_2789_missing	18	43	18	23	43	17	37	21	40	26
CCCTGAATTTATTAGG	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
CTACGTGTATATGACC	ref_2789_missing	3	8	5	8	14	9	22	6	24	5
GTCAGTGACATAGCTC	ref_2789_missing	43	80	43	37	76	44	87	35	81	24
CGCAATCGCAATATGG	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
TACTTTTGCGTACATC	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
AGTCGTAAGTCCTTTG	ref_2789_missing	6	10	4	3	17	6	13	2	9	5
TTGTCTGCGTTCTTAC	ref_2789_missing	16	58	11	6	40	12	36	14	42	17
GAGCTGGTCTCGCCCT	ref_2789_missing	10	35	20	14	26	19	23	16	30	17
GCTCACACATACATAA	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
ACGTGGGCGCATCTTC	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
CCTAAGCATTCTACAT	ref_2789_missing	3	5	5	5	2	3	3	5	5	2
CTCCGCTTTCGTTACC	ref_2789_missing	16	49	22	17	35	7	19	19	24	12
GCCTAGTCCTGTTTGA	ref_2789_missing	15	22	6	11	21	3	26	9	18	8
TGCAAATTTCGGAGTG	ref_2789_missing	17	38	20	20	35	20	35	11	45	13
CCTCTGTAACCTTACA	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
CGGTGCTTGGGATGGC	ref_2789_missing	28	44	35	21	40	28	55	25	69	26
TGAGCGCGTGATTATT	ref_2789_missing	9	7	3	1	4	6	7	5	8	3
TGTTTAAGGTTATCTT	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
TTCACAAGGTTTTTGA	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
CAGTCTGGATATAATG	ref_2789_missing	15	33	11	9	27	10	26	7	31	12
CCATGTTTAGCGCACG	ref_2789_missing	47	96	77	59	87	39	104	46	98	52
AAGCTTTAGTGTTTTA	ref_2789_missing	4	7	11	1	17	8	9	3	13	5
CAGCTATCGGAACCAG	ref_2789_missing	9	11	4	7	21	3	11	6	7	5
GGTCGTTTCTTGCTAG	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
CTCTTAGTTAGTTCGG	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
CCTATGTCCTAAATTA	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
GATAGTGGGCTGTTGT	ref_2789_missing	0	0	0	0	0	0	0	0	0	0
GGCGTTAGGGGTGGGA	alt_1786_fdr	92	84	127	98	94	99	76	93	101	85
CTTCATCTTGGGTGAT	alt_1786_fdr	60	51	72	61	52	52	55	58	65	55
AGGTCGTTTCGGCCGT	alt_1786_fdr	0	0	0	0	0	0	0	0	0	0
GCTAGGGGACACTTTA	alt_1786_fdr	11	4	13	8	8	4	12	8	6	7
GTCTGTTTCTGTCCAA	alt_1786_fdr	0	0	0	0	0	0	0	0	0	0
GTTCACTACGACAACG	alt_1786_fdr	172	148	200	184	183	154	196	137	160	159
GTCCCTGAGGTCGGGA	alt_1786_fdr	43	47	79	83	44	39	55	55	57	38
CATTGATTCCGATTCC	alt_1786_fdr	42	31	43	29	29	30	33	21	36	22
GACTCCTGATATACGG	alt_1786_fdr	15	21	25	26	22	20	16	16	32	14
GCCCATTTGGTTTGTA	alt_1786_fdr	17	17	20	15	21	15	17	19	17	15
TTGGGCTTGTTCTTAC	alt_1786_fdr	55	62	88	61	45	52	83	58	75	66
TGAATTTCATCGTGTA	alt_1786_fdr	36	35	47	44	27	29	28	47	39	28
TATGCAGTCGTGATAA	alt_1786_fdr	378	333	445	425	341	401	365	329	364	328
ATTCGACTGGTATGCT	alt_1786_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGCATATTCTTTT	alt_1786_fdr	15	6	13	6	2	9	10	5	7	8
CTGTGTGTAGGTCGAA	alt_1786_fdr	76	71	85	90	74	86	74	81	87	71
TTTTTTAGTGAATCGT	alt_1786_fdr	46	42	83	77	64	54	56	56	58	48
CGGTTTCACAGCTTTT	alt_1786_fdr	21	26	26	30	21	31	16	27	20	17
GCGACCCCGTGTCGTA	alt_1786_fdr	74	63	75	66	57	59	71	60	74	56
CACCGTGGTTGGGCAT	alt_1786_fdr	37	43	51	43	39	34	38	26	29	25
TTTCCTCACAGTCCTT	alt_1786_fdr	26	17	26	39	22	31	25	32	17	25
GGTCCGTCGCCCTCTT	alt_1786_fdr	130	121	178	133	119	109	111	113	127	116
TTGCGAGGCTCGGTCC	alt_1786_fdr	0	0	0	0	0	0	0	0	0	0
CTTTTGATCTCTTTTG	alt_1786_fdr	47	43	74	56	51	44	33	46	44	51
TGCGTTCCCTATTGTG	alt_1786_fdr	64	91	67	48	83	61	81	43	83	46
CGCCGACTTCACGGCC	alt_1786_fdr	0	0	0	0	0	0	0	0	0	0
GCGACTGAGGGCTGAG	alt_1786_fdr	94	85	114	103	76	98	93	83	93	89
CCGCTCTGGCGAGACC	alt_1786_fdr	0	0	0	0	0	0	0	0	0	0
TTTACTCCCGGCCGGT	alt_1786_fdr	11	16	10	11	7	7	9	8	22	8
ATATAAACCAGCATGA	alt_1786_fdr	106	90	115	122	92	93	87	112	98	109
CTCCCCAGCACAAATT	alt_1786_fdr	6	25	6	12	13	4	19	5	24	3
TCCCGTCTGAGGTGGC	alt_1786_fdr	35	148	58	48	176	36	182	51	177	44
CCTCTCTGGCGAGACC	alt_1786_fdr	0	0	0	0	0	0	0	0	0	0
ATCATGCGTTTCTCTT	alt_1786_fdr	37	25	57	57	26	34	28	35	27	33
TTGGTCTAGCAAAGTT	alt_1786_fdr	24	16	19	20	14	19	20	16	23	13
ACCAATATGCCTCTCT	alt_1786_fdr	1	4	2	4	9	2	12	4	7	1
GGCTGTGTCACCGCCC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
GGATGGGTCTCGCTAG	alt_6108_new	16	31	17	24	22	18	28	19	25	14
ACTCGCCTTTCAGGCC	alt_6108_new	18	25	9	9	30	13	30	8	44	9
GGCGTGACGCCATCAG	alt_6108_new	0	0	1	1	2	0	1	2	1	0
TTAGAGCCCACTGCAT	alt_6108_new	6	5	4	8	9	1	9	2	9	4
CCTCTGGAATTTTGTC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CCATATATTGGCGGAG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TCCCGATTCGCCGCGG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
ACGGCACCGTGGCTGG	alt_6108_new	14	26	24	18	25	18	24	20	21	11
TCTCTAATATATACGT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CTCAAATCTCTCGTCT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
GACACTAGGTCTGGAT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CCGAATCCTCGCAGGC	alt_6108_new	10	13	9	10	11	4	10	8	10	8
ATTTAGTTGTCCCCTA	alt_6108_new	17	28	25	11	33	11	18	13	13	12
ACTCCACGGTCTCAAG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TTACCACCATTGCCTG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CGTGGCTTAAAGTCTT	alt_6108_new	1	6	2	6	0	4	2	1	5	3
CTCGACAAATTCGTCT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TATAGACAATCTGCGC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CATGTAAATGCGCTGT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
GTCTGAAAATCATCAG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TTTCACGGACGCGCTT	alt_6108_new	4	5	4	0	2	4	9	2	2	2
GCAGCTCACCTGATGG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
AACGCAGATTGGTTCA	alt_6108_new	0	0	0	0	0	0	0	0	0	0
AGCCACTTGAGAATTA	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CATGGGGCTTCCGGCA	alt_6108_new	8	12	13	13	19	11	14	14	8	13
TGAGGTTGTCAGTATG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
AACCCATTCCGGCGGG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TAGACTCGACTTGACG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
GGGAAAACAAGCCCGA	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TTGACGGCTGTGTGGT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TTGTCGAATTGATCAG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TGGTATCTTTCAGCCC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
AGCTTCACGTTCTACT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
GGGTCGTCAGGAGGTC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TAGAACTCGATAATTT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TATCTGGTGGTATGTC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TTATTGCTCATTGACT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TCGCACGTGTTCCTGG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TCGAATGGTAACCCGC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
ATGGCCAGTTTCGACG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CCCGCACAAGGGCTCG	alt_6108_new	11	15	17	12	16	12	17	8	30	9
CTCTTTATACGCCTCG	alt_6108_new	3	4	6	5	9	3	5	2	4	2
TATGCAATTAACCCAG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CGCTTGCATCACTGGG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
TCGTATTAGGAGTCCC	alt_6108_new	0	4	1	0	0	0	3	1	0	0
GTCATTACACAGTCCT	alt_6108_new	0	0	0	0	0	0	0	0	0	0
AACCATCTTAATCTAG	alt_6108_new	0	0	0	0	0	0	0	0	0	0
AGCTAGTGCTAGTCAT	alt_6108_new	17	30	30	17	25	18	26	15	32	10
CTATCAAGGCGATCTC	alt_6108_new	0	0	0	0	0	0	0	0	0	0
CACGTTGTCCGTTATC	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
GTTTCATCAAAGTAGA	ref_2600_missing	13	29	19	14	31	22	31	20	27	19
AATATACAGGAGCACC	ref_2600_missing	76	72	78	61	82	66	77	69	94	62
GCCGCTTGTTGTATTA	ref_2600_missing	11	24	11	12	42	13	33	17	29	9
ACCTCGGTGTTGTTTT	ref_2600_missing	20	25	33	24	27	19	26	26	36	22
TATCTCTTCTCGGCAT	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
AGACCGTGCTTTGGGC	ref_2600_missing	16	16	20	18	13	12	21	11	20	9
TCCACTTAGCGTAGCT	ref_2600_missing	30	30	29	24	31	22	28	25	27	32
CTAGATTATCTGTGCA	ref_2600_missing	8	39	33	24	33	19	39	23	35	14
TCCGCAGTTCTTTCTG	ref_2600_missing	15	14	5	9	8	5	16	8	13	8
CTTCGCCTAGAATTCG	ref_2600_missing	11	73	21	24	92	17	94	16	78	23
ACAGATAGTAGTCGTA	ref_2600_missing	10	14	14	8	11	5	14	6	12	7
CGTTAATCCCATTTGT	ref_2600_missing	23	19	29	15	35	22	44	22	37	22
GATAGGCCGCATCTAT	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
TCTCTATCAGTACTAT	ref_2600_missing	5	10	11	9	16	9	7	9	13	10
TTTGTTTCGGGTTGGA	ref_2600_missing	65	92	60	59	72	62	91	64	109	48
ATCGGTTCTCTTTCGG	ref_2600_missing	0	0	0	0	1	0	0	0	0	1
TCCCATGCGGAGTAGG	ref_2600_missing	42	65	43	36	64	31	69	35	65	36
CTGGGGCTCTGCCATA	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
GGCATCGTTAGGCTGG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
ATGTGCCTCCTCGGCT	ref_2600_missing	12	34	26	19	38	18	40	20	39	20
TCACGGGGTGTCTCAC	ref_2600_missing	35	30	18	27	28	27	26	23	27	28
GTCCCTGGTGATACTC	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
ACGTGCGTGATGGCTC	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
GTAACAACGTTTCTCC	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
TCATATGTGTAGATCA	ref_2600_missing	9	12	9	6	25	4	24	4	24	7
CTCAGGAGCTGTCCCG	ref_2600_missing	8	5	11	0	10	4	13	4	14	3
TAGCTTGGGCCTTCAC	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
GTACCACTATGTCCTG	ref_2600_missing	29	39	47	37	39	27	46	27	35	24
TAATGGTCCTTTTGCG	ref_2600_missing	19	37	16	19	25	14	15	12	22	9
TTTAGCCCTTTGGCTA	ref_2600_missing	2	5	5	1	3	3	5	2	3	4
GCGTGCAAAGTGGAGG	ref_2600_missing	0	4	7	5	4	0	3	2	3	0
TCGATGGTTTACCGTG	ref_2600_missing	8	19	17	10	16	9	23	8	20	18
GCAACGGTTTCTTTAT	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
ATGGCGATTTCTGCGT	ref_2600_missing	6	6	9	4	3	11	4	12	7	4
TCGAATTACCGCTTGA	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
CTGGGCATTCTTAGGT	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
GGTAGTTGTAAGGTGG	ref_2600_missing	2	1	2	5	3	0	4	2	0	2
TCCTCCGTTTGAAACA	ref_2600_missing	2	4	3	2	8	1	8	0	7	3
TGTCTTTCCAAGATTC	ref_2600_missing	0	1	0	0	0	0	0	0	0	0
AACATTTAGCGCCTTG	ref_2600_missing	13	26	21	21	31	19	25	15	26	21
TGAATTCTAGAGTGAG	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
ATTTCCCTAGTACTAG	ref_2600_missing	24	37	27	15	33	21	33	12	30	17
CAGAGTCGATATCCTA	ref_2600_missing	21	25	16	15	33	20	32	32	41	12
CGCCGTGGATGTCAGT	ref_2600_missing	6	9	9	7	15	6	15	10	13	2
TGTTTAGATGCCTGGA	ref_2600_missing	0	0	0	0	0	0	0	0	0	0
CAAGCTGTTCTCTGCT	alt_1285_missing	31	85	46	24	79	21	86	24	88	42
TCAACCCTCCCATGTG	alt_1285_missing	0	0	0	0	0	0	0	0	0	0
ACTTCTGTTGCTATAT	alt_1285_missing	0	0	0	0	0	0	0	0	0	0
CTCTGCATGGTTTGGT	alt_1285_missing	8	13	11	2	13	5	7	6	15	5
TGTTTTGAGGCCTTCC	alt_1285_missing	16	41	18	15	41	12	34	13	43	12
GATCGCAGATTCGATG	alt_1285_missing	0	0	0	0	0	0	0	0	0	0
CCTAGTTCATACGGCA	alt_1285_missing	0	0	0	0	0	0	0	0	0	0
GTCGGGGCGCCTGGGC	alt_1285_missing	32	65	33	24	63	21	63	29	79	24
GGTACTTCCGTCCCTA	ref_3829_RC	3	21	15	8	13	6	19	9	15	8
TTAATTAAAGCCTTAA	ref_3829_RC	9	19	12	13	23	15	19	11	20	6
AAGCTCCATATCAGGG	ref_3829_RC	25	25	31	25	32	18	28	19	32	19
TGGGTTTTCCGTTTTA	ref_3829_RC	59	110	89	60	103	63	105	64	123	61
TTTCAGTCCACTCTCG	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
TGGGCAGTTTGTCTGC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
GGTCGGATTATTTAAG	ref_3829_RC	33	47	24	32	48	35	47	31	48	21
TCTTTACTCGGCCCCC	ref_3829_RC	84	95	89	74	96	79	112	59	123	57
GGCAGGCTTCGCGTCG	ref_3829_RC	41	56	45	39	51	40	46	20	50	29
CATGCATCAAACCCAG	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
TCCAGCCCATTGGTAA	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
GTTCGTTTGTGCTAGC	ref_3829_RC	8	10	9	6	5	1	21	7	15	6
CTCTCACTGTAGATAT	ref_3829_RC	4	5	11	6	7	3	8	4	14	4
ACGTTCACACTGAGCA	ref_3829_RC	79	138	82	80	139	86	121	71	145	70
TTAACTGCATTTTCCA	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
GATCCGCTGTACAGGT	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
ATCCTCCTGTTCACCC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
AGCGTCTTCGTTTCGA	alt_3829_RC	156	262	196	154	212	137	252	136	267	129
GCCAGAAGGGATTGGT	ref_3829_RC	22	19	16	11	20	12	26	22	13	9
ATGTATGACACATCCC	ref_3829_RC	73	158	67	54	161	39	142	47	172	57
ACCGGATATGCTGCGT	ref_3829_RC	145	230	170	145	245	171	227	132	281	147
CCTTTCCTGGTATTTA	ref_3829_RC	7	9	5	6	15	1	14	9	17	9
CACATTCCCTTCCCCA	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CAGTTCAGTTCGAAAG	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
TCGGCTCAACCCTGGC	ref_3829_RC	19	58	21	30	25	19	47	20	53	35
TAGCACCACCGAGTAC	ref_3829_RC	31	47	29	28	42	15	31	31	50	33
CCTTGCGGATTCCACC	ref_3829_RC	49	73	44	55	89	44	90	35	99	57
GGTTGGCGATGCGCGA	ref_3829_RC	44	63	46	45	57	41	45	33	67	45
TGATCTCTTGGGTGAC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CCCTTGGTATTTAGCT	ref_3829_RC	6	5	5	2	10	4	10	0	7	2
GGCTGCTATCGTTGTG	ref_3829_RC	2	4	0	0	2	3	8	0	3	3
GGTATTAATTGACTAC	ref_3829_RC	8	14	16	10	16	3	26	10	11	11
CCGTTGAACTTTGGTT	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CGGTCCGAGTTTATTT	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
AAAGTGCGGTTATTTG	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CTGCGAAGTGTGGACG	ref_3829_RC	14	36	22	17	41	20	31	22	45	21
TTGAGTTCCCCTCCTC	ref_3829_RC	39	73	46	44	70	47	61	30	80	58
GCTCCACTTCCCGTCC	ref_3829_RC	4	27	5	9	26	2	33	5	20	3
GCTGGTGGTGCTTCTT	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
TGTCCTGGATTTCTCA	ref_3829_RC	91	157	147	127	158	100	171	112	174	103
TCCGGCTCTTATCGCC	ref_3829_RC	13	19	12	15	29	11	32	7	35	20
TTTTATCCTAGAAGTA	ref_3829_RC	6	5	16	4	6	7	9	7	17	5
AGTCCAATACCGGGTG	ref_3829_RC	15	39	19	11	42	14	40	14	31	15
TGTATCACCTCTGAAA	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
GGTCTCCGACATTCGC	ref_3829_RC	10	29	8	6	11	11	13	9	15	13
ATTGAGTGAGCCAGTT	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
TAAGTGCGGTTATTTG	ref_3829_RC	117	194	135	129	169	118	211	98	193	109
TGTTTCCAAATTGACC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
TGTGCACTATTCAACC	ref_3829_RC	7	5	10	13	11	4	13	6	20	15
TTAGAATCGAATATGT	ref_3829_RC	44	73	58	55	72	50	80	39	90	35
ACGGGATTAAGTCGTA	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
AGTAATTAGTCCCATA	ref_3829_RC	141	223	199	170	238	149	230	140	204	142
TACTGGAGGACAGAAA	ref_3829_RC	47	74	43	56	76	37	79	48	57	39
TACGACTGTCTGTGTT	ref_3829_RC	42	62	42	30	77	22	80	26	60	28
TCACCCTTTAGTGGAA	ref_3829_RC	15	31	17	24	37	19	27	15	36	12
TTTTTAAGTATTCACT	ref_3829_RC	12	21	12	4	16	11	17	13	13	6
GCCTGCATAACCAAGC	ref_3829_RC	23	28	17	16	47	18	21	13	46	20
TTCTCACATCTAGACG	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
GGATCCGAGTCCACTT	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CGCAAAATTTCGCTTT	ref_3829_RC	60	100	90	64	76	41	125	52	104	75
TGCGTTTGGGTCAACA	ref_3829_RC	37	65	38	36	77	35	81	30	68	39
CGTGAAGGCGCCCGAC	ref_3829_RC	21	38	32	32	37	34	43	26	37	24
CCCTTTAAGTTTGTAC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CGGGGGCTTTCTCAAT	ref_3829_RC	3	4	3	2	5	3	2	0	3	1
TCTCTTCCTCCTTGGT	ref_3829_RC	5	12	6	3	10	5	14	6	10	3
TAGTCCACATAACTAT	ref_3829_RC	4	9	9	8	10	7	17	6	11	9
AGGGCAGTTTGTCTGC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CATAGATAATGTATGC	ref_3829_RC	171	250	200	173	276	153	323	173	309	154
CTGCTGCCGGTTACTC	ref_3829_RC	70	137	91	93	132	84	144	73	117	77
GTGGAAGGCCGGTACC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
GGTCAACCATAATTTC	ref_3829_RC	14	37	18	17	23	9	29	12	39	17
TGCCTGGTTGAACGTC	ref_3829_RC	0	0	0	0	0	0	0	0	0	0
CGTGTAAGATGCCGCG	ref_3829_RC	7	21	17	10	21	16	20	15	18	13
TAGCCCACTTTATTGG	ref_3829_RC	37	93	63	53	106	44	109	45	90	40
TACCCCGAAAACCGCT	ref_3829_RC	11	24	15	15	9	9	22	17	35	9
GCTAAAATGACTGGTT	ref_3829_RC	9	11	8	9	18	8	11	7	18	8
TTTTGCTCCTGAGTGG	ref_3829_RC	29	45	39	20	46	44	45	27	42	21
TCGAAGTCAGTCTTAC	ref_3829_RC	41	66	53	46	79	41	83	51	88	39
CAAATTTCTCTGTCCT	ref_3829_RC	1	5	6	6	3	1	8	1	7	0
GTTCGTTCTCAGAATT	ref_3829_RC	19	27	16	9	23	16	37	15	27	10
CAAAAGCCTACTGGTC	ref_618_reverse	20	39	30	35	29	23	23	23	33	8
CACCATACTTCGGTTT	ref_618_reverse	19	34	25	38	43	17	39	18	38	16
TTGTTTGCCCGTGCGT	ref_618_reverse	17	13	11	10	22	9	15	15	11	15
AATGTTGCACAGAAGC	ref_618_reverse	18	32	22	18	24	18	13	14	20	13
ACCGCCACCATTCTCT	ref_618_reverse	30	36	39	29	33	19	37	31	31	24
TCGGAACGTCCCCCAA	ref_618_reverse	26	25	31	29	36	23	26	21	32	25
CCCACGTCTTTTGAGC	ref_618_reverse	45	80	49	43	112	61	104	75	102	53
ATGACTTAGTGTGCGC	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TCGTGGACTTGGGACC	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
AACTGGTCTTGTGTCA	ref_618_reverse	28	40	27	29	46	30	52	17	38	15
GTTTAAGTTGATTACT	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTAGAATAAGCGG	ref_618_reverse	17	34	25	16	31	17	34	20	27	24
AAGTTCGGTGGGCATC	ref_618_reverse	189	247	209	188	270	183	241	174	250	173
CACTTAGGGCTCAGTG	ref_618_reverse	36	30	44	27	30	31	34	25	40	30
TCGGCGAAGTTGCCAT	ref_618_reverse	15	28	29	18	24	28	29	22	30	18
AATTCGTGTCTCTCTA	ref_618_reverse	36	46	65	30	42	41	41	39	49	41
CTCATTCCCTTTCCGG	ref_618_reverse	34	54	40	30	51	38	48	50	55	39
AAGTTCGCGGTTCTGC	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TAGAGTTCTTCAAAAC	ref_618_reverse	64	102	81	67	106	70	113	63	122	64
GTCAGCATTCTTCTTT	ref_618_reverse	17	22	13	16	16	21	25	14	15	20
CTCACGGACGGGTCTC	ref_618_reverse	61	86	61	60	81	63	76	56	73	58
AGATCGCACTGGTCCA	ref_618_reverse	90	107	99	69	114	79	124	77	106	67
GCTCACCTGGGCCTTG	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
GCAAAGCTTAACGATG	ref_618_reverse	12	13	15	20	12	11	16	12	17	10
CAGTCCCAAATATTAT	ref_618_reverse	12	8	14	13	4	8	11	11	13	13
ATTGGGTTCAGAACAG	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
CCGATTTGTACATCGT	ref_618_reverse	7	15	12	8	12	6	9	9	11	9
ATTTAAACGGTCGGTT	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
AATCTATGGGGGTCGC	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
CTTATATTATGTCATC	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TACATTGTGTTTATCG	ref_618_reverse	29	44	39	26	35	34	34	24	44	36
ATGTCGTACGAAAAAG	ref_618_reverse	11	19	18	10	22	14	17	12	13	8
TTTTGTGTGGCAACTC	ref_618_reverse	68	103	115	77	110	75	111	67	128	79
AGACATACATCAAACT	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TGCAGCGTCTGTCGTT	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TGAGATACGCCATCCG	ref_618_reverse	7	5	11	13	10	10	9	8	12	1
TGCTCTTCTCCCTTCC	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TTAATACACGCAATGT	ref_618_reverse	12	10	5	0	4	4	10	9	6	11
CAACGGCAGAGACCTC	ref_618_reverse	15	13	32	11	13	23	17	17	25	19
CTTAGGAATGTTTAAC	ref_618_reverse	14	12	12	6	20	7	15	11	8	11
TTATCAGTACTTCCGT	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TGGCGTTTTCGGGAGG	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
CGTTAAATTACCTGCC	ref_618_reverse	12	26	28	19	33	24	32	32	38	18
CCTTGCGAGTGCGAGA	ref_618_reverse	46	72	41	31	54	43	63	41	62	49
CGACACGGAGTCCAGC	ref_618_reverse	69	109	96	86	111	72	93	78	92	85
TCTTGCCCAGTGCTAT	ref_618_reverse	48	50	62	47	61	45	80	38	37	38
ACGTTAATTCCTAGGA	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
GGCGATACTTGACTTT	ref_618_reverse	151	146	140	134	156	123	145	134	162	121
CTAGCGGCTAAGCGTC	ref_618_reverse	51	77	46	48	87	36	54	39	102	36
TCCGTTAATAGAGATG	ref_618_reverse	50	50	60	42	50	52	45	35	49	40
GAAGACATGCATCCGA	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
TCCAGTCAAGCTTGTT	ref_618_reverse	120	134	106	97	132	87	141	95	150	87
TTCCGATTTTCAACCT	ref_618_reverse	13	8	10	9	17	8	13	17	14	9
CATGTTGGTCATCGTG	ref_618_reverse	0	0	0	0	0	0	0	0	0	0
GAATTAGCGGCAATAC	alt_2543_missing	5	5	7	4	9	2	3	1	8	4
TAGGCACAAGGAGGTC	alt_2543_missing	2	1	0	2	1	3	0	2	0	1
GCACCCTCGCTTCTGA	alt_2543_missing	5	8	4	2	12	2	6	4	3	4
CGTTAAAAAATATTAG	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTTTAAAGTCCT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
AGCGTAGGTCCATCCT	alt_2543_missing	17	34	25	17	46	29	35	16	49	28
ATAGAGACTTTTGGGT	alt_2543_missing	0	0	1	2	0	0	0	1	0	2
CAGCCTTAAAAGCATT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TTCGGGTCTACCTCAC	alt_2543_missing	0	1	0	1	0	0	1	0	0	0
CGGGTGTTTCATAATT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
ATACGTATCACCCATT	alt_2543_missing	2	2	2	1	2	1	2	2	2	1
CGTCCGCTCACACTCT	alt_2543_missing	0	4	0	0	0	0	1	1	0	0
ATGAAATATATATGCA	alt_2543_missing	1	3	2	1	0	0	0	0	2	1
CATGGTTGTTACATGT	alt_2543_missing	0	0	0	1	0	1	0	0	1	0
TACGTTGTCCGCTTGG	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TGTGGCTTTCCAGTGA	alt_2543_missing	3	1	1	0	0	0	0	0	3	1
GTCGATGCTGATTATG	alt_2543_missing	1	4	9	3	3	4	5	5	3	2
TCCTTCAGCGCATGGT	alt_2543_missing	2	7	4	8	4	4	8	4	11	2
TTGGCTCTTCCCGTGC	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
CTAACGTGTCTCATTA	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
CGCCTGGACCAAACGA	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
CTTAACGGGAGTCAGG	alt_2543_missing	2	6	2	2	2	4	3	0	2	3
CCCGCTCGAAACGTTC	alt_2543_missing	3	4	1	1	11	5	4	3	5	5
GAAACGGGTACGCAGA	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
CGTTGCCTGATAGTGT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
GTAAACAGCTGGGATT	alt_2543_missing	1	1	3	1	2	1	6	0	2	0
GTCCACCCGCACCAGT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TGAAGCCCCCGTTCAA	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
AAACCACTTGCGAATC	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TTAACCATTGGACGTG	alt_2543_missing	2	1	1	2	2	2	4	1	0	2
CGGGTTACTTTTAAGG	alt_2543_missing	0	3	4	3	9	1	8	1	2	1
CTTTTAACCTCAAGCT	alt_2543_missing	2	1	0	3	1	0	6	2	4	1
ATAGGTGATAACTCTC	alt_2543_missing	10	11	10	9	9	13	16	5	25	9
CTGCACTTCTTTCTAG	alt_2543_missing	4	12	1	8	4	2	4	3	8	4
TCTCGTGTATGCTCCA	alt_2543_missing	5	4	5	3	1	4	12	6	5	2
ATTTCTTTGGTTTAGT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TCCTTTAAGGGTTCGC	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
CACATCGACGGGCTAG	alt_2543_missing	0	0	0	0	2	0	2	0	1	2
TCTGAGGCCAAGTCTG	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TCTCATCCGATCGCAG	alt_2543_missing	0	0	0	0	3	0	2	0	1	2
CGATCCCGTGTTTGGC	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TTAGTCGGTAAAAATT	alt_2543_missing	4	9	2	7	5	4	6	1	6	1
TCACGTTTGAACGATC	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
AGAGGCCGCAGTTAGT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
GTGCCTGGGCCTGCAC	alt_2543_missing	2	0	3	0	6	1	3	1	0	0
GCACCTTTACATTTTT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
CGGATCCGGTAATATT	alt_2543_missing	0	1	0	0	0	0	0	0	1	0
CACATACTTATTTTTT	alt_2543_missing	3	7	11	4	8	4	4	8	10	2
TCGCAGAGTAGTTAGC	alt_2543_missing	1	3	2	4	2	3	4	2	1	2
CGGATAAGTACCTCTT	alt_2543_missing	2	9	0	0	2	3	3	0	3	0
GATCCTTGTACTAAGT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TCAGTATCGCTCCCCA	alt_2543_missing	1	21	2	10	15	3	12	2	19	0
GGCCCCATTGCTCGTT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
TGTTACTCAATTTGGC	alt_2543_missing	3	3	3	0	1	1	0	1	3	4
CAGGGACTAGGATGTA	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
AGATCTCGCGGGCTAG	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
GTGATGCGAACCACAT	alt_2543_missing	7	8	2	2	7	4	7	6	2	1
CATTAGTAACGGGGTC	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
GGTACGAATGCGCCTT	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
GGCAAAGAGCTGCCGA	alt_2543_missing	5	6	1	2	2	0	6	2	4	5
GAAGGTCTTGCGGTCA	alt_2543_missing	0	0	0	0	0	0	0	0	0	0
CTGCATTTTCCCGTAC	alt_2543_missing	1	4	1	3	6	1	8	8	1	2
GAATAGTGTTTGACCG	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
ATCACCGCGGTTTTGG	ref_4425_missing	3	14	5	6	16	2	13	3	14	7
CCTATCGACTTAGGAT	ref_4425_missing	0	11	5	0	14	3	12	2	15	3
GTAGTTTGTCCGAGCC	ref_4425_missing	1	5	1	0	2	0	2	1	1	1
CCCTCCTGATCTCGAC	ref_4425_missing	2	10	2	3	16	2	12	5	19	5
CGGGTGTACAACAGCG	ref_4425_missing	9	31	16	15	31	10	43	11	19	15
TTCGTTAGCTGAGAGA	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
GTCCTCATTTCCAAAT	ref_4425_missing	24	60	30	22	64	19	59	25	57	23
CCGCTGGGCAGTAGAG	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
CAGCGTCCTGGAGCTT	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
GACGGCTAGTTTCTGA	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
TTCCGGAGACACGAAT	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
GACCTTAGCCCAGTCC	ref_4425_missing	4	5	0	6	10	6	10	3	8	1
CTGCGCTTTTAACTTC	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
TACATGCTTGGTCATG	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
ATATAAGTTTTTGTCA	ref_4425_missing	13	8	17	11	6	7	9	9	10	9
AAATATGAGGTGGATA	ref_4425_missing	12	8	5	10	21	8	9	9	7	8
TGTGGCCTAGCATTGA	ref_4425_missing	9	19	9	11	18	18	15	8	15	7
TCACTGTAGCCCCGAT	ref_4425_missing	2	6	3	0	6	2	6	1	9	1
TGCCCGTGACTAGGAC	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
TATCTTCCGTGACACT	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
CAGCCAAAGGAATCAT	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
CTATTTCTGAGCTTGC	ref_4425_missing	39	82	59	69	81	40	93	37	90	61
GCCAAAAATAAACACC	ref_4425_missing	3	18	8	5	15	8	18	8	18	11
GCCCGGCATGCACCGC	ref_4425_missing	4	4	1	1	4	1	2	2	4	1
CCATTAATGTGCCCCT	ref_4425_missing	4	11	2	1	10	2	9	5	6	4
GCTTACCGCCGGATCG	ref_4425_missing	15	29	16	12	24	7	18	7	27	12
CGCGCCCCTAGTACGG	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
TTTTATTGGTCAGAAT	ref_4425_missing	30	59	55	31	78	30	80	45	75	26
CGGGCGGTGCTGACGC	ref_4425_missing	3	14	6	5	7	8	9	6	10	3
AGTTCTATTTTCGTCC	ref_4425_missing	1	1	0	1	0	0	0	1	0	0
GTACTTCCGGACGCAC	ref_4425_missing	11	16	18	8	18	11	23	5	20	7
AAATCTCTGATAGCGT	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
TTGTGAATCAACCGTC	ref_4425_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTCTAACCTTCA	alt_5836_new	37	50	40	39	47	37	43	25	50	24
CAGTTGCTAAGTTCTC	alt_5836_new	0	0	0	0	0	0	0	0	0	0
GCACACTCTGTTTCGC	alt_5836_new	1	10	2	0	5	1	6	0	6	0
TTTCCTATGCCTGGGT	alt_5836_new	52	36	45	41	43	32	46	57	35	32
GGCGGACCGTCAGTGC	alt_5836_new	45	56	54	54	64	40	55	46	73	48
GGTATAGCTTAACTCT	alt_5836_new	22	12	22	13	20	22	22	16	14	21
GCCTTGTCATCGCCCG	alt_5836_new	0	0	0	0	0	0	0	0	0	0
CCCTGGTGTCCGACAT	alt_5836_new	35	26	34	22	26	26	27	24	24	25
TCCACTCAAAACCGTC	alt_5836_new	59	106	50	38	108	32	129	40	118	43
ACTCCGAAGGTCGATT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
CTGTTGGATTTGGATG	alt_5836_new	26	27	30	32	38	30	38	29	34	41
CAAAGCTTCTTTTATC	alt_5836_new	0	0	0	0	0	0	0	0	0	0
TTCCGCGTGTAGTGCA	alt_5836_new	57	71	62	61	68	53	86	48	64	55
AGTACTCTAGGTCCGG	alt_5836_new	119	135	139	111	123	102	129	90	160	95
CTTAGTGGGGTGGGGC	alt_5836_new	28	38	38	36	43	43	35	42	39	22
CATCTCACCGAGCATA	alt_5836_new	0	0	0	0	0	0	0	0	0	0
GTTAGTTTCTGTGTGT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
CGCTTCGTTCCATCAT	alt_5836_new	33	34	24	23	25	22	19	21	25	20
CTAAGAGTTTTGTGTG	alt_5836_new	11	15	12	20	14	19	25	13	21	23
GTTACATTTTTGATCA	alt_5836_new	31	24	29	43	32	32	45	46	35	19
CTATAGTGGAACCTTG	alt_5836_new	19	13	24	16	16	14	12	14	14	17
TGCATTCAGCTCTTAG	alt_5836_new	5	5	7	7	9	4	11	5	18	9
CCGAGTGCGTGGTACC	alt_5836_new	0	0	0	0	0	0	0	0	0	0
TGAGTTTTTTTTTGTT	alt_5836_new	43	38	64	41	38	40	49	38	53	35
CTGACAGGCAAGCCGC	alt_5836_new	96	101	111	99	103	102	131	101	96	94
CGTTTCCGCTCCAACC	alt_5836_new	0	0	0	0	0	0	0	0	0	0
CGGATGTCAAGTGGGG	alt_5836_new	255	197	246	222	248	179	267	188	263	201
CGGTACTGCAACTGCT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
AGGGACCAGAGCCTGT	alt_5836_new	5	13	13	6	2	7	7	7	7	5
TCCCGCGGGCCAGCTA	alt_5836_new	7	8	3	5	11	4	10	7	11	6
CCGCGTTTGCTCGTTT	alt_5836_new	208	194	250	202	223	212	229	204	247	199
GCTCGGCGGCCCGAGG	alt_5836_new	26	32	44	29	37	20	30	34	32	23
GACAATGGGTACTTCC	alt_5836_new	0	0	0	0	0	0	0	0	0	0
GAACGCTTAATGTAAG	alt_5836_new	0	0	0	0	0	0	0	0	0	0
GTCCCGCATGCCGGTA	alt_5836_new	64	61	68	60	54	51	56	48	66	65
CAAGTGGCTTAAGGGT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
GTAAGTTAAGGAGAGC	alt_5836_new	33	53	59	40	35	45	47	39	45	27
GCTAGGGGGGTCGGTC	alt_5836_new	22	25	40	28	20	32	28	12	25	20
GTTTTACTTCCCTTTT	alt_5836_new	4	9	10	8	3	6	2	6	4	2
TTCTTATCGGCTACTT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
GGTCCAACACGGCTAA	alt_5836_new	26	32	42	41	27	29	39	41	47	26
ACGGTAAGGCCCAAGT	alt_5836_new	54	59	72	68	50	56	65	64	47	39
ATCTTGTCACAGCCTT	alt_5836_new	15	30	33	19	47	19	36	23	19	30
GAGCGGGCCCTGGAAT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
AGGTGGTGGACGGGAA	alt_5836_new	3	2	3	0	0	3	2	1	0	4
CCCACGAGTGACCAGA	alt_5836_new	15	16	8	4	6	9	10	6	5	8
CAGCTGGGCCCACGAT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
ACCGGCACGTGGGAAA	alt_5836_new	21	12	20	15	23	10	24	16	20	21
GTGTACGGCAGGCAGT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
TACCCGATTACTCCAT	alt_5836_new	0	0	0	0	0	0	0	0	0	0
TTCTTCCAACGTACAC	alt_5836_new	22	34	39	29	26	17	34	30	13	22
ATCATCTATTGCTTGT	alt_5836_new	7	5	13	7	6	7	8	9	11	8
GTACTTGAAACGTTCA	alt_5836_new	0	0	0	0	0	0	0	0	0	0
CTGGACTCAACAAACC	alt_5836_new	0	0	0	0	0	0	0	0	0	0
TTTATCGTTCCAAACC	alt_5836_new	66	48	66	68	66	59	61	41	60	39
CTGATGTCAAGTGGGG	alt_5836_new	0	0	0	1	0	0	0	0	0	0
GACATTGCGGTCTAGG	alt_5836_new	28	41	38	30	33	24	35	32	29	20
CTACCTTATTTCATTG	alt_5836_new	0	0	0	0	0	0	0	0	0	0
TGCACCTATAGTCCCA	alt_5836_new	57	56	70	56	59	48	74	57	56	52
TCATCCCAATGACCAT	alt_5836_new	11	18	20	13	12	17	16	17	30	15
GTTATCTAGATCCTTG	alt_5836_new	0	0	0	0	0	0	0	0	0	0
CTTCCCATATATTGCG	alt_5836_new	0	0	0	0	0	0	0	0	0	0
TACGGGCTTGAACTGC	alt_5836_new	18	27	25	27	21	12	20	14	22	19
ACTTCATCCGGACGTG	alt_5836_new	17	29	31	28	17	29	28	28	28	18
TGCAAGTTAAGTGATA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
ACGCAGGCCTCCATTG	ref_6017_new	5	3	4	0	5	2	2	2	3	3
ACGCCAGTTACCGTCA	ref_6017_new	5	10	4	9	6	2	12	7	6	4
ATGTTAACGTCCCAAT	ref_6017_new	15	19	23	17	16	14	30	13	30	17
ATTCCTGTGACCGAAC	ref_6017_new	52	78	57	47	73	47	82	52	91	54
ATACAAAATTAGGTGT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
AATACTTGCTTCTGGG	ref_6017_new	91	113	92	69	106	73	116	75	129	67
TCCGCCCATCATTCTG	ref_6017_new	26	46	47	24	36	35	37	28	53	30
TTTCTCCGGAATTAAT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CAGAGCCAACGTACGA	ref_6017_new	15	29	17	14	29	7	31	17	51	15
TTCCTTGTCTTCGATT	ref_6017_new	1	3	1	1	4	1	1	0	1	1
TTCCAAAGGTTTTCAA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
GGTTTGGGTTCCGAAC	ref_6017_new	2	0	0	0	2	1	0	1	0	1
ACGGGCTAGCGCCATG	ref_6017_new	63	55	70	56	78	50	75	45	90	51
ACATCCTTTGGTGATT	ref_6017_new	103	97	87	87	106	75	101	73	102	74
TACTTCAGTTAGCCTA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TTATTGCATCCTTTAA	ref_6017_new	14	20	33	21	30	16	45	21	39	23
GTTGCGCGGACCCACA	ref_6017_new	9	11	12	6	8	2	15	18	9	8
GTTCGGTCTCAGCAAT	ref_6017_new	16	13	18	13	12	4	15	3	14	12
CGTCGTATTATTATTT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TCCGGTTGTCTCGTGA	ref_6017_new	17	19	29	33	26	14	26	30	27	15
TCAAACTCCGCATGCG	ref_6017_new	105	159	120	124	170	93	178	95	167	102
AACGCTTATCAACAGT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
GGATACTTATCTCTTC	ref_6017_new	2	1	5	1	5	1	4	3	0	0
TATCTGTCTATTCTTG	ref_6017_new	11	13	12	11	11	11	19	8	11	9
TCTGTGAGTTACCTTG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
GACGGGTCATACGCGC	ref_6017_new	2	31	2	6	27	5	26	5	30	4
TGCCATCTTTTCACTG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TTGTCCATTTGTCATT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CATCCATAGTCATTCC	ref_6017_new	28	41	34	29	44	19	35	30	37	25
GGCTATTTCGGTTCCC	ref_6017_new	1	3	1	2	0	0	2	0	1	0
GCCGACGAAACCGTAG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TTCATGTGTGAGGTTT	ref_6017_new	33	54	45	42	53	36	67	30	51	28
TAGCACCTGATTTACT	ref_6017_new	17	26	18	15	26	13	28	13	27	9
TCCAGTTCTTGTGCTC	ref_6017_new	8	28	22	20	32	13	25	15	23	9
CCGTGATTCTGATCCG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CGCTGGATTACTATCT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TGGCTTCCTCTCGTTG	ref_6017_new	40	45	55	38	41	46	50	33	52	40
GGAATGTGCTCGTATT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TCAGTGTCAGTCTCTG	ref_6017_new	7	8	12	6	16	9	12	11	14	6
GCGAGCCGAGTGGCTC	ref_6017_new	15	20	20	12	12	12	17	6	25	10
TCGCGGGTGAGCCGCA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
AGCCAGGAATGAGAGA	ref_6017_new	63	104	81	56	126	48	107	75	108	60
CTTGTTTTTTTGTCCC	ref_6017_new	38	49	38	36	53	27	47	43	44	30
CGGTGTCGACGAGGTT	ref_6017_new	2	15	3	2	14	4	7	0	13	3
GTTTCTTTTTAGGCGG	ref_6017_new	13	19	20	10	18	8	16	6	22	16
TTTGTTAAAAGGAACC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TATCCCCCTGTTTTTC	ref_6017_new	48	72	54	79	62	50	62	43	66	44
TGCCGTTGAATAATTT	ref_6017_new	4	16	4	11	12	7	12	11	10	4
TGATTATCGTCTCTAT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TTGCTTCAGCCCTTTC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
ACTAGCGGGGTCCGGA	ref_6017_new	7	12	5	12	8	4	13	8	9	8
ATCCAGTCGGTAACTG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CTCGGTTCGCACTTGT	ref_6017_new	4	5	8	3	5	3	4	7	8	3
GAGTTTAATTTCTTGA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
GTAAAGTGGTCCTCAT	ref_6017_new	47	45	31	32	57	34	62	39	50	35
TGCCTGTAGAGACGTG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
AGCTTTTGGGATCGAC	ref_6017_new	38	40	47	22	54	25	47	32	56	35
TACTCTGGCATTTAAG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CTAGCATCCCCCTCAA	ref_6017_new	0	0	1	0	2	0	0	0	2	1
TCTTTATTTCTTCCCC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CTATTTGACTTAGCAC	ref_6017_new	3	6	7	1	7	3	5	7	4	6
GTTTTCGTCTAATATT	ref_6017_new	11	12	18	8	17	18	22	10	22	9
AGATTCTCTATGACAT	ref_6017_new	45	67	53	47	64	54	79	52	73	36
GCAGACTGGAAAGTAG	ref_6017_new	8	4	3	3	2	2	5	2	7	3
ACCGCCTCCACAGGCC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
GTTACGTTAGCTCGGG	ref_6017_new	16	27	32	16	24	13	33	19	29	13
GCTACATTCCGATCAT	ref_6017_new	8	10	8	5	16	10	26	8	27	3
GGGTCGGGATTGAACA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
AGCTGACCCTAGAGGT	ref_6017_new	8	33	20	15	33	20	25	19	28	17
TCCGGGGTGGATCTGC	ref_6017_new	8	17	12	11	19	14	18	14	11	8
TATTATGGAGGAAAGA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
ATTAGTTGTTAGCCTC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TATCTATGTGGAGGGA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CTCGAGGAAGTTAACC	ref_6017_new	9	3	8	8	6	1	1	6	4	2
GTCTATTGTTCCCCGG	ref_6017_new	25	30	20	22	34	15	27	18	31	20
ACACTCAGCTCGCTTG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CTACCAGTCGGTACAT	ref_6017_new	5	9	5	5	11	9	14	7	8	6
CTTCGTCTTGAGCTGC	ref_6017_new	14	15	10	17	12	10	17	19	30	7
ACTTCCGACGAAAATG	ref_6017_new	120	211	147	148	201	140	199	132	194	121
TTCCTTGAGCGGTAGC	ref_6017_new	2	4	5	4	7	4	5	4	6	0
GCACCTGTATCTACTA	ref_6017_new	25	31	33	17	39	21	36	22	59	21
GACATATTACTTGCAG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CAACCCTGAGTATCAC	ref_6017_new	26	33	29	28	51	32	49	29	57	19
TGCGCAACAAACATTT	ref_6017_new	10	28	19	8	11	15	17	12	12	5
GTCTCACGCTCGATTA	ref_6017_new	1	1	0	3	6	5	4	2	10	2
CAGACGTCGGGCCCCA	ref_6017_new	18	30	12	13	41	7	39	6	19	9
GCATTACGCTGCGAAA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TTTCACATACTCGGCG	ref_6017_new	21	33	31	21	23	20	35	18	30	15
GGAAAGGTACGTTCCA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CGGGCCCAGCACCGTC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
AATCAGTAACTATAAT	ref_6017_new	11	14	12	12	19	6	9	9	7	9
TTCGATCATTGTTGCG	ref_6017_new	8	10	6	11	8	5	16	8	10	1
CCCTTCAATTTTCTTC	ref_6017_new	57	48	44	32	61	43	57	47	59	50
TCGTCGAAATAACGAC	ref_6017_new	6	8	4	6	3	3	4	0	3	1
GGCACCTCTAATATGT	ref_6017_new	26	9	15	11	31	9	26	23	22	14
AATCCTTATAGGTACC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CCGCATGTCGGCCTAT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CCCTCTACATTCGATT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TGCTCTAGTCGTGTGG	ref_6017_new	40	57	54	33	67	43	56	24	63	29
TGTGTTTTATTATTTG	ref_6017_new	19	31	34	27	44	24	55	28	53	20
CATCAGTTGAACTATC	ref_6017_new	21	22	16	11	24	17	32	14	38	16
CTCCTCCAGATGTCCG	ref_6017_new	91	165	110	103	138	96	154	109	155	81
ATTAGTTTCGTCCCAC	ref_6017_new	5	12	5	6	6	2	3	1	10	3
TTTTAATAAATTTTCT	ref_6017_new	9	28	29	19	30	16	26	17	22	10
CAACACTGTCGTGACA	ref_6017_new	15	29	13	11	25	13	12	12	17	12
TATGGGCTTGCGACCA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CGTATCTTTTGTCGGT	ref_6017_new	5	1	2	1	5	0	3	4	5	5
CTATCCGAACACACGG	ref_6017_new	14	12	6	13	18	13	11	7	18	10
AGTTTTCTTGACTCGA	ref_6017_new	17	19	16	6	7	12	17	7	18	5
TGGGTGTTATGGCCCG	ref_6017_new	21	26	23	22	33	22	28	14	26	20
AAGGTATACCTTTTAT	ref_6017_new	4	7	8	7	6	13	14	11	10	10
AAGGTATTGGCCATAT	ref_6017_new	5	9	3	8	7	9	9	7	10	5
TGATGGCTGAGATTAT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TTCGTGAACATTTCAG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TCTGCTGACGCCTAGC	ref_6017_new	0	0	0	0	0	0	0	0	0	0
ATAAGCAATGACCTCA	ref_6017_new	2	6	13	7	3	5	6	6	8	5
GGGCAGCGTAGTTTAA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CTGAGTGGAGATAACA	ref_6017_new	18	26	19	15	40	15	32	13	35	14
AACTAGGCCCAGCATT	ref_6017_new	21	21	22	16	20	25	33	18	40	15
TATCCGTCCGGGCCAT	ref_6017_new	41	55	51	34	42	29	59	33	65	35
ATGAGATGATCTTAGA	ref_6017_new	24	47	29	22	27	19	42	19	41	19
CTCAGCCAGTGAAGCA	ref_6017_new	8	16	10	7	21	14	14	10	16	2
ATTTAACCGGCCCCAG	ref_6017_new	37	53	42	33	64	38	43	34	49	26
AAAGTGATTTGGGTGT	ref_6017_new	49	87	90	57	70	62	113	46	122	38
GGGCATGGTAATACAG	ref_6017_new	8	11	14	12	11	7	10	8	12	1
ATGCATACCGTTTGGC	ref_6017_new	92	111	116	109	145	85	147	80	137	75
TGCCTATTACTGTAGT	ref_6017_new	22	34	20	24	41	17	36	23	24	13
TTATTCCCAGCCCTCG	ref_6017_new	37	40	29	22	42	29	45	30	42	25
GATTATACTCGATGTG	ref_6017_new	29	45	48	33	65	41	69	35	62	28
CTTCGTCGTCTGAATG	ref_6017_new	9	18	27	26	23	25	18	21	30	21
ACTGCTGCACGCCCAA	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CCCGCTCTCGTTTAGC	ref_6017_new	59	64	59	46	81	34	60	57	75	38
CTGGGTCAGTTCCTAA	ref_6017_new	33	45	28	36	37	30	48	39	43	31
ATTAGTTATAAACAGC	ref_6017_new	20	36	31	33	32	23	34	24	32	29
CTCGGCTGTCCTCCGG	ref_6017_new	14	41	28	26	40	21	42	20	47	20
TTACTTCGTCCTCACC	ref_6017_new	33	40	33	36	40	29	44	23	58	25
CTTTTATGCAGTATGG	ref_6017_new	0	0	0	0	0	0	0	0	0	0
CATTCAGGAATGCGTA	ref_6017_new	2	5	4	4	3	1	1	0	4	2
ACAACATAAGGCCAAC	ref_6017_new	6	8	9	6	12	3	5	3	7	3
TCGAGGCTCTCAAAAC	ref_6017_new	21	30	31	22	30	18	23	16	32	19
CACTACCTTCGCATAT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
GCGCCCACATTCGCCT	ref_6017_new	4	3	0	2	6	2	2	1	6	1
ACCGGGAACAGACATA	ref_6017_new	5	15	15	12	28	14	24	9	21	15
GGCAGAGTCTTTCTGA	ref_6017_new	20	34	32	28	27	28	40	26	36	28
GAATTCGTAGGTTAAG	ref_6017_new	22	14	17	13	23	8	17	11	16	12
AGTCTTTTTTAGTAAA	ref_6017_new	3	3	4	4	6	6	14	1	2	7
TTATCCGGGCACGTAC	ref_6017_new	66	59	57	49	58	41	61	41	85	46
CAAGTCTTTGTTATCT	ref_6017_new	0	0	0	0	0	0	0	0	0	0
TTACTTTTATTCTCCA	ref_2307_missing	10	8	11	7	11	4	8	9	13	8
AACCTGACTTCTACGT	ref_2307_missing	10	17	17	16	15	12	12	10	15	16
CCTCTAGGCCATCGAC	ref_2307_missing	34	54	43	37	53	35	58	38	73	32
ACATTTACCGGCCTAG	ref_2307_missing	21	20	15	24	16	16	25	27	20	17
GGGTACAAAGCGTTTA	ref_2307_missing	47	55	57	36	60	36	74	33	58	43
TTACGGCTTCCGCCAA	ref_2307_missing	6	22	6	2	20	6	19	1	23	3
TATACTGGGTGTGGAT	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
GTGAGCCCACCCACCG	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
TGATTCACTGGATGCT	ref_2307_missing	15	35	24	24	36	22	25	24	24	17
TCTCCTACAAAGCGAT	ref_2307_missing	10	13	7	12	24	8	24	18	22	11
TTGATTAGTATGCTAC	ref_2307_missing	17	25	25	12	23	11	26	24	29	10
TCATTTATTTTGTTTT	ref_2307_missing	18	22	32	30	32	16	16	11	37	21
TTTCTTCAGTAACTAC	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
CTCGGGGTGGGAATCA	ref_2307_missing	15	22	20	19	40	25	21	19	45	19
CATTTGATGAGTCAGG	ref_2307_missing	3	4	2	6	6	5	3	6	5	5
CGGCTCTCTATCGTTA	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
TGGCTTGATATGTAAC	ref_2307_missing	7	14	8	11	17	12	9	7	13	1
GTCGTATGCCACGTTG	ref_2307_missing	3	9	4	2	4	7	7	5	5	5
GATGATTACGATGCAC	ref_2307_missing	3	4	4	3	4	4	3	2	7	1
TTCTTTCAATTCCGGA	ref_2307_missing	19	24	21	14	26	12	31	21	20	14
GTTGGCTAGTGCGGGT	ref_2307_missing	9	18	8	6	20	9	17	12	8	7
GTTTTGTGCCCATACC	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
GTACGTCATATTACTC	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
CGTCCAGCTTCCGCTC	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
GGAGTAGGATGTGAAT	ref_2307_missing	7	17	11	5	21	8	13	9	15	6
TTTACTCTCGTTCATG	ref_2307_missing	4	2	9	7	1	0	3	5	3	1
AAACTTTCATATGTAT	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
ATTAGTGGACGTATCA	ref_2307_missing	12	17	11	14	15	8	16	7	16	14
CCTATGCCGTGGGCTA	ref_2307_missing	5	7	4	1	19	3	7	3	9	4
ATCGTATGAGGCGAAG	ref_2307_missing	15	21	20	13	11	5	21	16	25	16
AGTCCGCGTGGGAGCA	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
CAATATCTCGTATCCA	ref_2307_missing	3	4	3	7	11	0	10	3	9	8
CTGTTCACCCGTATCT	ref_2307_missing	11	8	5	10	13	9	4	8	5	5
GTATGACCAAGCCCCG	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
AGGTGACTGGTTAATT	ref_2307_missing	15	29	16	9	24	8	22	12	15	15
CTTGCAGTCTCGTTGT	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
GGGTGTAGGAGGGGTT	ref_2307_missing	3	4	3	2	6	1	3	5	6	3
CATCTCGTAAATTCCG	ref_2307_missing	5	7	3	5	4	8	15	4	10	2
TCTAGATTCTCCCCGG	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
CCCCCACTCCCTATGA	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
TGGATTTATCTTTCCA	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
ATTTCGTGTATAACGA	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
AAACTCGTGTCGAACG	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
AGCCTTAGAATGTTCG	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
GCGCTGCCGAATATGG	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
TTATAGATATAGTGTG	ref_2307_missing	6	3	6	3	2	5	4	1	7	5
GCGCAACCTCCGCATA	ref_2307_missing	8	13	7	15	27	13	16	15	17	9
CGCCTAATGTATCGGT	ref_2307_missing	5	5	2	1	8	2	4	5	4	7
CAATGCCAAGGTCCTT	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
GGGTGGCCGGTACTAG	ref_2307_missing	0	0	0	0	0	0	0	0	0	0
TTCTGCGGTTAATTAC	ref_2171_fdr	0	0	0	0	0	0	0	0	0	0
CATCTGCGTAATCTAA	ref_2171_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCAGGGGCCCCTG	ref_2171_fdr	170	64	227	176	60	167	70	156	68	150
AAATCTGGATCAACGA	ref_2171_fdr	448	215	572	474	169	447	204	405	175	406
ACGAGTTTTACATAGT	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTGGAAATCCATT	ref_2171_fdr	104	37	126	101	43	121	55	110	39	96
CAACTGTGTGGAACGT	ref_2171_fdr	0	0	0	0	0	0	0	0	0	0
CTTATAGATGCGGCTC	ref_2171_fdr	296	152	333	275	143	286	132	290	147	306
CAATGGTATGTTCTAG	ref_2171_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTGTTCCAATGGT	ref_2171_fdr	74	26	89	59	19	79	25	61	34	41
TTGCCATGTAATGAGG	alt_2171_fdr	415	220	489	394	226	363	219	371	194	321
AATTCAGTTCTATCGG	ref_2171_fdr	80	35	117	91	27	70	35	91	37	72
CGCAGCCACATACTAG	ref_2171_fdr	84	54	154	118	73	108	57	78	51	102
TTTTTTGTGGATAAGC	ref_2171_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTCCGCGATTTC	ref_2171_fdr	0	0	0	0	0	0	0	0	0	0
CCGTCATTAGATCCCG	ref_2171_fdr	105	49	140	114	47	120	54	123	70	90
GTATATCGCCAGCTGT	ref_2171_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCTAACTTCCATT	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
CAGCTAATGGTCTCCT	ref_1924_fdr	1	4	3	2	5	1	3	0	11	4
GGCGGCATAGATGTCG	ref_1924_fdr	18	14	15	16	20	10	14	18	15	16
ACCGCTGTTTTGATCC	ref_1924_fdr	17	19	35	32	26	36	23	34	24	19
GATTCCCGTTGCCTTG	ref_1924_fdr	17	6	9	7	12	10	6	7	11	7
ACGTTTGCACCGAAGT	ref_1924_fdr	60	73	85	87	64	65	60	68	96	65
GTGTGTCATGATCTAA	ref_1924_fdr	64	69	81	80	55	53	60	60	66	52
GATCGTTGGCCTGAGA	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
ACACATAAGAGTTTTG	ref_1924_fdr	146	135	180	147	162	144	137	162	170	122
CCTCGGAGCCGCTTGT	ref_1924_fdr	9	40	4	16	32	6	45	7	44	5
TAAGCTCCCGGCGCCG	ref_1924_fdr	21	21	26	27	23	22	17	27	17	22
GGCCTAACGCATGGCT	ref_1924_fdr	40	40	23	39	30	27	35	22	32	30
ATCTGGATAGTCCGGG	ref_1924_fdr	41	29	40	51	38	44	44	33	34	34
TATCTGGCATAGTGGT	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
TCATACATTCCATGAT	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
TAAGCTCCCGGAGCCG	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
GAAGTGGCATACGAAC	ref_1924_fdr	39	42	42	37	55	62	51	41	55	38
GTGTCGTCCATTAGTT	ref_1924_fdr	48	55	70	62	35	28	40	58	72	47
GTACGAGCCCGGCGGT	ref_1924_fdr	48	29	67	60	60	55	60	44	38	49
TGTCATCATCAATTGT	ref_1924_fdr	84	85	96	85	78	66	89	60	87	78
TTGAAAGCTCAGAACT	ref_1924_fdr	24	24	31	25	24	25	19	22	21	25
CGAACAGCGACTCAAA	ref_1924_fdr	107	79	148	128	90	110	106	112	111	99
CTCTGACAATTTCTCC	ref_1924_fdr	24	33	29	21	46	29	28	14	45	17
CGCCTAATACTATTCC	ref_1924_fdr	10	19	19	11	14	14	10	29	17	15
GTTAGTGGTTTATTAA	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
GCTGATCCTCATTCAG	ref_1924_fdr	14	9	15	15	6	18	16	5	2	11
TTTTAAAAGTGCTTTG	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTGATATGCGCGT	ref_1924_fdr	21	30	35	27	22	35	20	25	34	18
TCTGACTCTGTGCATC	ref_1924_fdr	32	18	51	31	21	30	29	30	31	31
GATAACGCCGTGATTA	ref_1924_fdr	116	76	133	110	79	109	98	95	82	86
TCTTTACAGTTGACAC	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
TGAGAGGCTCGAACCC	ref_1924_fdr	47	34	54	50	37	63	52	39	46	47
CGATGTGGTTAACCAT	ref_1924_fdr	0	0	4	3	1	5	5	3	3	5
GAATTAAAGACTACCA	ref_1924_fdr	100	115	129	127	95	114	84	104	100	78
GTTTGATAGCACACGG	ref_1924_fdr	137	139	196	164	154	162	167	147	182	131
GAGCCTTTAGTATGGC	ref_1924_fdr	53	40	71	60	34	55	44	44	47	55
TAGGGTCCCAGGATTC	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
CTTAACCTCACCATGT	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
CATGACAGCGTCGTCC	ref_1924_fdr	38	36	15	32	26	28	23	18	29	23
CCTCAACATGCACGTT	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGTGGGCTATATG	ref_1924_fdr	41	63	61	48	48	54	37	45	50	32
ACAGTGCTACGGTTTA	ref_1924_fdr	40	28	37	37	43	35	31	23	30	18
TATTTTGCGAGGTCCG	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
AGGTACACCGATTAGG	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
CGAGAGTGATCGTCTG	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTCTGTGTTTCTC	ref_1924_fdr	3	6	4	9	5	10	5	5	4	9
GTTCCTCCGAGATCCC	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
AGTCCGGAATTCCGCG	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
TAGTGGCTGTCGGGTA	ref_1924_fdr	2	1	2	1	3	2	1	0	2	1
GGCCGAAGTCAATCCA	ref_1924_fdr	35	28	46	45	17	40	30	35	39	45
AATTGCTATTAAATTA	ref_1924_fdr	18	18	43	46	31	32	20	37	19	38
TGTTCCGTCATCTGGC	ref_1924_fdr	32	35	51	42	39	50	35	36	44	43
GCTCTGAAGGATAGCT	ref_1924_fdr	20	17	37	19	13	27	18	27	26	20
TTTTAAGGATTCGTAC	ref_1924_fdr	31	40	48	43	29	38	36	49	42	49
AGTCTCGTACGTATAA	ref_1924_fdr	6	5	7	9	12	6	6	11	9	7
CTCAGCGTTTTCATCT	ref_1924_fdr	98	81	102	81	63	69	72	84	79	76
GCGTCGCGCCTCTATT	ref_1924_fdr	145	122	190	161	141	137	110	163	143	143
ACCATAATGACTTCTC	ref_1924_fdr	9	7	11	9	18	11	14	8	14	17
TTGGTATAACCGTAGT	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTGCGTCAGGCGG	ref_1924_fdr	27	16	19	30	32	27	31	21	25	21
TTGTTAGTGAAGCACG	ref_1924_fdr	44	38	48	52	37	57	46	49	40	64
TCTCATATCATCTATG	ref_1924_fdr	29	23	22	35	28	22	38	24	24	27
GTCTTGAGTAAGGGTA	ref_1924_fdr	14	19	17	27	11	30	18	23	15	19
CTTTCTCTTCGCCAGT	ref_1924_fdr	0	0	0	0	0	0	0	0	0	0
AAGCTGTCTCCCGAGT	ref_1924_fdr	29	30	32	30	31	30	35	22	29	34
TGTGGATGGTCCTGTA	ref_1924_fdr	11	15	16	21	14	15	10	29	18	9
CGGCTGGTTGGGATCA	ref_5709_new	44	37	35	43	51	33	43	34	47	28
CACATCCTTTCCCTAC	ref_5709_new	0	0	0	0	0	0	0	0	0	0
AACTCGATCTTTAATG	ref_5709_new	23	23	28	38	34	20	24	20	28	31
CTCAGTCTTGGAGAGT	ref_5709_new	45	70	56	42	61	41	70	36	69	34
TTACCCGCAGTTTCCT	ref_5709_new	16	32	33	36	30	14	36	22	29	15
ATTTATCATTGTCCTC	ref_5709_new	1	1	4	1	1	0	0	0	0	3
GGATGTGTGTCTTGTA	ref_5709_new	32	27	19	16	26	20	26	24	27	12
TGTTGTTCTGATTAAA	ref_5709_new	40	32	41	18	45	19	29	24	43	18
TGATTTCCCCTAATCT	ref_5709_new	34	27	39	28	27	35	28	16	44	15
TCCCATAAGTAACGGA	ref_5709_new	7	5	20	21	9	12	10	11	17	6
TGTGCTTTGGGACTAA	ref_5709_new	42	76	57	63	75	46	62	41	67	39
CACAGCCCCCCAGCTG	ref_5709_new	22	25	26	18	18	16	13	22	26	29
CTGGTTAAACCATGCA	ref_5709_new	0	0	0	0	0	0	0	0	0	0
ACCATATGGCGAATTA	ref_5709_new	0	0	0	0	0	0	0	0	0	0
TGAGGGAAGCTCTCAA	ref_5709_new	45	38	44	37	46	43	34	32	39	28
TTCAACCATACTTCGG	ref_5709_new	27	32	22	30	27	16	34	24	33	21
ATGAGCTGAGATCGGG	ref_5709_new	6	6	6	12	9	7	5	8	9	6
TTTGCATGCCACGGAG	ref_5709_new	13	19	24	26	15	13	19	13	33	17
CGTAGTCTAAGGTCTG	ref_5709_new	12	24	19	16	10	19	17	16	19	7
GCCCCTCCCAAGCAAT	ref_5709_new	0	0	0	0	0	0	0	0	0	0
TAGGATATAAGAGTCT	ref_5709_new	61	51	62	32	57	50	48	47	52	43
CTAGTGTGTTAGTCAA	ref_5709_new	4	4	4	3	5	6	2	4	10	2
ACGCCCTGCCGATAGT	ref_5709_new	56	38	47	31	50	26	57	34	51	32
CAGAAGGTGCTACTTT	ref_5709_new	32	44	47	27	46	36	57	39	41	35
AGATGGTGATTATTTG	ref_5709_new	21	22	23	20	18	12	14	11	18	14
ATGGTGTAACTTCGTG	ref_5709_new	44	57	30	51	49	42	47	47	51	34
ACCTTGACATGGTTCA	ref_5709_new	21	28	20	30	25	9	36	15	26	22
CTGGGTCTCGGGTTGC	ref_5709_new	5	6	14	2	18	6	11	7	18	9
GTTAGATATTCATAAC	ref_5709_new	1	1	2	2	1	0	0	3	2	1
TCTCTCTACATCCTCA	ref_5709_new	68	69	67	67	64	58	71	56	93	58
GTGTCTCTGTGGACAG	ref_5709_new	26	26	29	20	22	16	31	17	24	20
CACCTCTCCGTTCTAG	ref_5709_new	0	0	0	0	0	0	0	0	0	0
TGCGAGGCTTTGGGTG	ref_5709_new	17	22	29	29	20	26	27	19	22	22
GCGCCTCTCGAAAGCG	ref_5709_new	54	63	62	50	82	39	76	48	89	64
TCAGGTTTGCTCTACA	ref_5709_new	11	10	9	8	10	5	12	8	18	7
CGGAGGCGGTTATCAT	ref_5709_new	21	13	24	25	25	31	28	28	24	21
TTTACTTCGGTACCTG	ref_5709_new	0	0	0	0	0	0	0	0	0	0
TCCTTGTCTAAATATT	ref_5709_new	22	27	24	26	21	23	21	11	25	20
ACAGTCCCCATCGTCG	ref_5709_new	15	90	37	25	97	23	92	14	101	19
TTCTTGCAACATCGTA	ref_5709_new	63	58	65	54	55	58	65	48	41	42
TCAGTCACCTTTGGGC	ref_5709_new	30	44	46	37	66	20	63	30	52	22
GTGTGTATCATGTAGT	ref_5709_new	0	0	0	0	0	0	0	0	0	0
CCGTCTTACGGGATAT	ref_5709_new	15	41	17	11	33	12	47	6	58	5
AACTTAGTCCATCGTG	ref_5709_new	0	0	0	0	0	0	0	0	0	0
CTCGTAAACCCGTTAC	ref_5709_new	19	29	23	12	19	10	37	16	24	20
CTCGGCTGGGCCCACG	ref_5709_new	5	5	4	6	3	9	12	2	11	5
GCCTCAACATTGGTCC	ref_5709_new	9	10	9	6	11	9	10	8	11	13
CGTCTGCAACTTGAAC	ref_5709_new	41	42	53	30	54	36	43	39	55	41
TTTTTCGGCTCTTAAT	ref_5709_new	15	17	19	9	10	11	8	10	19	18
TTCATTCCCCGCCGTT	ref_5709_new	0	0	0	0	0	0	0	0	0	0
AGTTCCAGCTTGATCT	ref_5709_new	43	36	45	40	42	31	38	30	30	28
GGTTGGGTAGTCCCCT	ref_5709_new	0	0	0	0	0	0	0	0	0	0
CCTCAGACAGCCCTTC	ref_5709_new	48	46	62	33	54	51	67	55	51	50
GGCATCGGGCTCTATT	ref_5709_new	14	13	18	12	12	19	16	10	11	16
TACCTCGCTCGCATAG	ref_5709_new	33	53	37	34	62	41	55	36	51	36
CGCGCAAAAACCATCG	alt_5922_new	0	0	0	0	0	0	0	0	0	0
CGGTATTTTGATACTT	alt_5922_new	17	26	17	15	27	21	34	20	22	14
CACAGAACTCCACCGG	alt_5922_new	19	19	26	15	26	15	23	18	25	18
CTGACCTGAACACTGG	alt_5922_new	16	10	18	10	19	15	13	13	21	15
GCTAGCCATAGCGGAT	alt_5922_new	16	32	20	14	23	20	22	14	25	7
GGCTCGTTGCATAGGT	alt_5922_new	160	156	229	156	182	181	196	155	172	162
CTTTCTGCCCTGATTG	alt_5922_new	16	16	22	11	20	21	15	16	21	20
TTGTGTGTTTCGATCA	alt_5922_new	35	58	49	47	66	44	47	37	48	31
CGTATCGATCCAGGAC	alt_5922_new	0	0	0	0	0	0	0	0	0	0
AGCCCGGGGTCTTAGT	alt_5922_new	0	0	0	0	0	0	0	0	0	0
GCTCTGACATTATTTT	alt_5922_new	26	11	16	15	21	17	25	22	21	19
ACGGAATTATTTACAC	alt_5922_new	59	75	44	44	41	61	56	43	62	44
CTTTTCTCATGGGTAT	alt_5922_new	111	89	139	86	92	88	106	116	97	85
TTTCGGTGCCAGCTCT	alt_5922_new	9	10	10	4	3	4	12	2	5	6
TTCTGCGTTTCCAGAT	alt_5922_new	0	0	0	0	0	0	0	0	0	0
TACTGCTGATTCCGGT	alt_5922_new	56	76	82	71	55	54	69	72	75	61
GGTGCCTGGAATTCTA	alt_5922_new	34	54	34	34	51	44	33	20	41	28
TGATCCCGGCTTCTGT	alt_5922_new	28	27	31	21	25	23	25	17	28	17
CATAGTAGTCGATAGT	alt_5922_new	5	28	8	8	16	9	35	8	21	5
CGTGTAGTTCTGCCGC	alt_5922_new	44	32	46	29	31	25	40	23	43	25
CTCACCGCGCAGGTTG	alt_5922_new	20	10	17	23	13	15	22	12	17	8
GACGGTTAAAACGTTG	alt_5922_new	18	24	35	24	23	26	26	20	22	21
CAAAAATTGCGTTTTA	alt_5922_new	183	187	255	196	212	167	218	177	194	146
AGTTCTGAATATTGAT	alt_5922_new	80	59	67	51	58	45	66	51	54	57
TTTTGAGAGACCTAGT	alt_5922_new	29	35	24	16	16	12	22	15	26	21
TGCGCGATTCTTATTG	alt_5922_new	0	2	3	1	1	0	3	1	5	0
ACGCCAGTCTTTTTGG	alt_5922_new	29	25	23	26	19	23	22	23	29	27
TGTCTTTAATACCGGC	alt_5922_new	0	0	0	0	0	0	0	0	0	0
TAGGTGAAGACTAGCG	alt_5922_new	74	86	86	63	100	66	88	66	84	45
CATTGAGTGTTTTTAC	alt_5922_new	25	29	28	22	23	20	24	15	21	18
TGATTCGATATCAATT	alt_5922_new	0	0	0	0	0	0	0	0	0	0
TCTTCTATATGTTCGA	alt_5922_new	31	30	36	31	36	24	30	21	50	29
CCGCGTATGCTCTAGA	alt_5922_new	11	21	25	14	25	13	11	8	20	15
AACGATCTCCTCCCCA	alt_5922_new	14	23	11	14	16	13	26	15	23	9
GGGTGATCGGCCTCGA	alt_5922_new	0	0	0	0	0	0	0	0	0	0
TACTTTATTGGCCTTA	alt_5922_new	0	0	0	0	0	0	0	0	0	0
TACACGGGTTCTAATT	alt_5922_new	49	70	49	52	70	52	56	46	70	47
GTCTCCTGTTCTCTGG	alt_5922_new	45	60	72	65	66	52	88	54	89	52
GCGAAAGCGTTCTTGT	alt_5922_new	0	0	0	0	0	0	0	0	0	0
ACAGGTTCTAACTATT	alt_5922_new	0	0	0	0	0	0	0	0	0	0
AAGTGTTCAGTTTCGG	alt_5922_new	56	60	58	47	54	65	45	42	52	60
CTGACTATAGTCCCCG	alt_5922_new	3	17	4	7	19	4	17	8	30	2
TTACACCCACCCTCCG	alt_5922_new	5	6	6	7	12	9	13	2	16	6
TTTCTAGCGAGAGCCT	alt_5922_new	7	17	8	9	14	8	8	3	11	9
TGGATCAAGACTGATT	alt_5922_new	30	42	34	39	26	42	49	24	38	29
TGTGTTACCGGAGAAC	alt_5922_new	0	0	0	0	0	0	0	0	0	0
ACGTGCATGTGCATTG	alt_5922_new	26	51	44	36	43	40	55	30	49	33
GGTCACAAGCGGCCCA	alt_5922_new	8	15	12	14	8	13	13	11	11	12
GCCCGCCTTCTATAGC	alt_5922_new	0	0	0	0	0	0	0	0	0	0
AAGGGTGCCTGCTATG	alt_5922_new	0	0	0	0	0	0	0	0	0	0
TGGTCCCTGCACTATG	alt_5922_new	49	48	60	41	52	34	59	43	59	46
TCCCTGTCGCTTTTAG	alt_5922_new	4	43	5	8	44	3	38	4	41	3
GGTTGTGATTAGTCTA	alt_5922_new	39	47	32	28	40	33	48	33	46	34
CCCTAGTCCGCAAAAT	alt_5922_new	17	24	17	28	20	18	25	17	11	14
GGGCTACCATTGCGAT	alt_5922_new	0	0	0	0	0	0	0	0	0	0
TCCAGTGAATCGTGTT	alt_5922_new	39	54	40	36	60	47	58	41	55	44
GCAAAGAAATGGTACT	alt_1338_fdr	203	30	228	112	49	154	31	126	42	169
GTCGCTGGTGGGTACG	alt_1338_fdr	824	99	934	563	78	759	74	560	94	747
ATGTTCGTGGGTGCAT	alt_1338_fdr	82	9	91	54	6	60	8	66	3	66
CCAATAAGTGGGCATT	alt_1338_fdr	42	8	80	31	11	56	7	43	4	59
CATGGGGATCCCATGT	alt_1338_fdr	122	18	124	89	13	96	12	79	16	111
ACACCTTTCTAAGTTC	alt_1338_fdr	65	10	87	62	7	64	16	63	11	65
TAGCATACTCATTTCA	alt_1338_fdr	99	27	140	95	11	102	13	88	14	90
TCTTCGTGTAGTGTCT	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
TTGTCCAGTTCTGTAG	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCCGCTACTAGCC	alt_1338_fdr	530	91	722	400	95	492	94	458	102	452
TCGAATACGGTCTTCT	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
GTTCCCCGCTTAGCTT	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
AATTCGTTGACCTTCC	alt_1338_fdr	154	16	157	77	20	115	21	120	26	127
CTTCTTAGACCCTATT	alt_1338_fdr	59	7	48	35	1	40	10	26	8	31
GTTGGTAGATTTGTTG	alt_1338_fdr	1251	157	1343	895	128	1112	176	1016	149	1075
CGACGAGATTGATCGA	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
CCCTAGTCCTCGTTAG	alt_1338_fdr	124	26	141	82	37	106	31	116	21	104
GCATATGCATTACTAT	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
ATATCTTGGATGACAA	alt_1338_fdr	286	48	313	221	34	248	29	192	43	211
AAGTTGCGACTGCTAT	alt_1338_fdr	648	69	703	420	69	554	92	558	91	527
AGTTTCTGTATGTACA	alt_1338_fdr	666	89	758	449	71	599	99	508	73	578
AGTCTAACTCTAGAGA	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
TGCCGTAAGTTTTAAC	alt_1338_fdr	238	31	240	171	31	210	42	176	37	204
GTATTGCGGGTAGTGA	alt_1338_fdr	519	62	624	351	70	464	60	434	67	477
GGCCCTCACCGAGTGA	alt_1338_fdr	135	13	144	74	20	115	10	104	20	135
TATTTGCACGATGCGT	alt_1338_fdr	1221	128	1312	843	130	1056	153	860	170	1013
TAGAGGTATTTACCTG	alt_1338_fdr	196	40	192	136	39	172	40	137	25	167
TCGACGCCCATGGGCT	alt_1338_fdr	596	98	672	447	82	510	96	470	106	529
CGACGACTCCATGTTT	alt_1338_fdr	106	11	112	69	16	105	16	84	16	81
CGATAAGTTTCGTAAC	alt_1338_fdr	1843	346	2021	1284	333	1623	369	1507	332	1545
CATGAGGCCCTTTCAC	alt_1338_fdr	832	123	837	567	102	713	115	587	101	760
CAACCTAGGGCTTTGC	alt_1338_fdr	149	64	174	113	66	137	49	127	52	118
GTCGTCCTGAAGGGGT	alt_1338_fdr	2842	283	3215	2041	325	2622	315	2279	312	2515
CCCGCGTAACCATCTT	alt_1338_fdr	57	9	55	40	13	40	7	47	14	51
ATGCACACGAGTATCT	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
TCTAAAGGGTCTGCAG	alt_1338_fdr	107	17	115	96	14	102	13	90	17	111
TAGGTAGATTCTCTTT	alt_1338_fdr	591	71	683	408	70	542	86	508	79	571
TATTTGGCTAGTTTTA	alt_1338_fdr	1352	178	1360	865	204	1049	206	917	196	1116
GTCCGGGCGATTGATT	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
TATGCCTACAGTTTGC	alt_1338_fdr	0	0	0	0	0	0	0	0	0	0
CCGCGTGGGGTATAGC	alt_1338_fdr	136	19	125	91	22	106	15	94	19	131
GCAGTATCGCCCAAGC	alt_1338_fdr	337	33	311	219	31	287	42	276	45	320
TGCTCGGCGCTCTTTC	alt_1338_fdr	381	41	419	260	55	324	48	305	59	301
TTCATCTTTTTGACAA	alt_1338_fdr	1472	190	1565	988	211	1246	202	1152	199	1300
TGCTCTTCTCAGTTTA	alt_1338_fdr	97	7	95	80	9	104	15	95	13	79
GCTCATCTTACTTATT	alt_1338_fdr	352	44	407	294	65	311	49	294	34	311
AGTTATAAGAATGGTG	alt_1338_fdr	145	28	179	102	19	154	28	125	25	140
GCATGCTACTCGTGCC	alt_1338_fdr	588	92	688	471	94	524	97	544	94	629
GCAGGCCGTACCACTT	alt_1338_fdr	340	40	402	221	33	303	38	286	39	307
CAATCGGCTTAAAATG	alt_1338_fdr	53	13	56	32	13	49	7	58	8	51
GCGCGTTTACGTGACG	alt_1338_fdr	222	36	266	172	26	225	33	214	26	223
GCTACCAATAGTGTTA	alt_1338_fdr	144	31	152	96	27	101	30	92	24	116
CACATGGCCAGTAGGG	alt_1338_fdr	786	103	887	563	79	829	95	609	103	690
GTGATCTTATCTGCTA	alt_1338_fdr	30	7	26	31	13	34	15	30	12	31
AGGCAATGGTAAAATT	alt_1338_fdr	31	61	50	37	54	36	63	29	43	43
ACACATCTAGAGTCCG	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TCCTGGTACCGGCCCT	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TCACGTCAAAGCGTTA	alt_5813_new	16	5	6	11	15	6	16	6	18	5
TCATGGGGCTCTAGAG	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TCTATAGTTCGGGGTT	alt_5813_new	29	26	21	21	24	19	27	11	25	19
ATCGTCTGGACCATCA	alt_5813_new	16	17	17	21	24	5	23	17	27	17
AATACCCTCCGGGTGG	alt_5813_new	24	25	42	43	33	32	43	22	35	32
TAGTGGATAGCCCTTC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TGTGGTGGGCACTTTG	alt_5813_new	8	16	14	14	11	7	26	9	19	11
ATGCAAAGAGGTAAGA	alt_5813_new	32	26	36	23	20	25	31	20	26	28
CCTCCCTCCTCGGGCA	alt_5813_new	40	38	42	35	46	35	50	28	60	36
TACCTTCGATCGAGGT	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TGTGTTTTTTATTCAT	alt_5813_new	0	1	0	0	0	0	0	0	0	0
TCTGAGACTATGCTCG	alt_5813_new	24	24	34	23	26	17	33	32	42	24
AGCTCCCGACCTATAT	alt_5813_new	77	120	96	79	105	61	120	61	125	55
CGTGCTTGACTGATCG	alt_5813_new	0	3	0	0	3	2	1	1	7	3
CTGAAGTCTCGACATC	alt_5813_new	26	15	43	24	28	24	24	22	41	25
ATGTCCCTGTAACGCA	alt_5813_new	0	0	0	0	0	0	0	0	0	0
GAGAATTGATCTCCAC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TCCCGTGCTTTACCGC	alt_5813_new	67	67	45	48	79	44	69	49	72	48
GACATCGACCCGAGAT	alt_5813_new	19	30	34	16	20	13	31	28	25	26
TACGATTTTACTAGCT	alt_5813_new	14	14	13	7	13	11	13	8	12	9
CTCAGCGGCGGGTCAC	alt_5813_new	113	156	117	113	140	108	147	90	168	98
ACTATCAATCTCACAC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
CGTCCATTAAGCTAAC	alt_5813_new	35	30	47	42	40	26	29	35	33	30
GTGGTTTCTAAGTACT	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TAATGGATCCATCATG	alt_5813_new	101	95	117	88	99	84	106	85	117	102
TCCTGGTCCATGTCCA	alt_5813_new	64	75	81	44	75	49	95	62	68	54
TGTATTTAGAATGGAC	alt_5813_new	42	56	49	42	52	53	45	37	49	45
CCCCTTATCATTGAAA	alt_5813_new	33	33	29	42	55	26	34	25	48	38
CGCAAACGATTTAAGA	alt_5813_new	0	0	0	0	0	0	0	0	0	0
CAGGAACGACGTAGCC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
CCCGGTGGGTCGGGAA	alt_5813_new	0	5	4	1	5	8	9	5	10	7
CTATTTGAAACTGTGA	alt_5813_new	9	5	8	5	6	3	6	11	8	4
TGTGCCATTCAAGACC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
CTCTGTTAAAAACCGA	alt_5813_new	18	30	27	30	29	26	31	21	30	14
TTTTTTGCAGCGATGT	alt_5813_new	60	51	75	63	61	68	94	64	76	60
TGACCCTCATAGTGTG	alt_5813_new	66	95	95	75	95	67	93	64	106	50
GGTCGTCAAGAATGTA	alt_5813_new	0	0	0	0	0	0	0	0	0	0
GTTGATTTGTAGTGGT	alt_5813_new	92	135	143	100	151	101	143	90	142	84
TCGCGTTGCTACTCTC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
ATAGTTCCGGGTTGTC	alt_5813_new	37	41	42	34	18	24	42	38	53	31
GCATTCTCTCAGAACA	alt_5813_new	18	18	21	12	14	22	18	18	14	16
ATTAACAATAATGGGC	alt_5813_new	48	47	46	41	34	41	33	51	51	36
AGCTTCCAGTTTTTTT	alt_5813_new	47	60	43	32	57	43	43	37	55	44
CAATAGAAGCCGCTGC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
GCGGTCATTTCAACGT	alt_5813_new	37	39	53	41	56	50	46	48	58	26
AATCGGATATAGTTGT	alt_5813_new	21	15	18	13	21	12	18	11	11	15
GATCTTAATCGGTGTA	alt_5813_new	2	4	1	4	3	2	1	1	6	1
TCACTTTTTTTCCTGC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
CTGAGATGGTCGGCTA	alt_5813_new	28	43	31	24	43	26	35	27	34	21
CATACGCATACCTAGG	alt_5813_new	0	0	0	0	0	0	0	0	0	0
AGGCGGTCAGCTAAAA	alt_5813_new	0	0	0	0	0	0	0	0	0	0
GACCGTCACCTTAATT	alt_5813_new	3	11	13	6	8	6	12	11	11	4
CTTTCTTATTTGATAG	alt_5813_new	37	30	44	35	32	30	42	27	27	27
TAATCATGTCTTTTGC	alt_5813_new	55	45	51	36	43	58	54	63	72	38
CTGGCAGATCTGCCGA	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TTAATTGATTGAAGTT	alt_5813_new	12	14	22	16	22	19	20	13	16	13
TATTGTAGAATTTTCC	alt_5813_new	14	25	23	16	15	20	28	17	17	23
AGTCCCGTAGTTACGC	alt_5813_new	5	7	4	2	4	5	6	7	5	6
CATCGCATCTTCTTAG	alt_5813_new	191	203	230	178	245	199	237	152	234	147
TCATCATACGTCACCG	alt_5813_new	47	60	64	37	64	51	47	42	50	58
CGTTTCGTATCATATG	alt_5813_new	7	4	3	5	13	4	3	5	6	3
CACTTGGCTACTTTAG	alt_5813_new	12	3	9	7	11	6	6	7	7	6
CTAGTGACTTGAATAC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
TGTGTTCTAGGCGCGG	alt_5813_new	0	0	1	2	2	0	4	1	1	1
ATTTACCAATTGGAAC	alt_5813_new	1	0	0	0	0	1	0	0	0	0
CGGCGGATTAAGTCGA	alt_5813_new	30	34	46	42	28	41	33	30	42	35
AGCTCGTAAGTTATCT	alt_5813_new	4	5	5	1	4	3	4	2	3	6
TATTGCACTCTTCCCC	alt_5813_new	0	0	0	0	0	0	0	0	0	0
AGCGTAACCGCCCTTT	alt_5813_new	11	7	22	10	12	14	4	9	14	10
CTTATCGCTTAGTATC	alt_5813_new	36	37	63	37	57	48	59	50	51	27
GATCGCTAAGGTTCGG	alt_5746_new	35	52	40	29	50	50	46	24	52	31
CATCGATTACCGGGAT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
GGTTGCCTTACTGATT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CAGAGAGGGCTATTTC	alt_5746_new	23	34	30	42	54	27	42	44	38	22
ACTTTTTACTAACACC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CGTGCAGCGCAGAACT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
AGCGCCCAGCCAAGGG	alt_5746_new	5	21	12	15	10	8	15	14	11	9
TTGACTGAATGTTGGG	alt_5746_new	71	112	93	80	119	82	141	54	120	47
CCGCGATAGTGCGTAC	alt_5746_new	2	4	9	3	8	6	9	3	9	2
AGCTATCGTTATCGCT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
ACATCACCGTTTCGGG	alt_5746_new	0	0	0	0	0	0	0	0	0	0
ATGTTTATGGGGTACC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
GCCTCCAGTTCTGCGC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TGTTGTAAGTTCAGTG	alt_5746_new	12	14	6	7	10	10	15	5	12	13
TATGGTATTCTCATAT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CCGCCTATTTGTTAGT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TAGGGGGGGGACTTTG	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CTAAACTTTGAGCTCC	alt_5746_new	25	34	16	27	40	13	38	22	37	13
CCAGGCTTCGTTTTCC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TAATATGGCCGAGTTG	alt_5746_new	36	29	37	35	38	37	30	30	38	34
TCTTTAAGCTGCGATT	alt_5746_new	14	28	19	18	14	9	20	12	14	7
TGCTTTTCCTAAGCTG	alt_5746_new	40	49	61	39	58	44	44	40	57	48
CCTTCTATCAGAGCGC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
ATCCTGACGCTGTACT	alt_5746_new	42	58	45	41	55	47	55	43	61	59
TCCGGCCCGCCCGTTG	alt_5746_new	56	63	57	50	72	37	60	41	75	49
TTGCAGTCTTTTCTCC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CTTGGTTCAAGCTTAA	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TAATCCAAGGTGCAGG	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TGCTCCTTTCGTCCTG	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CCTTAAACGCATGATG	alt_5746_new	22	30	32	23	31	22	32	12	29	13
CAAAAAGATTTTCATT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CTGCGGTAGCCCAGGC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
GGTAATCCCTATGACT	alt_5746_new	20	43	20	19	27	26	30	15	31	19
CTCCGTCGTATTCGAT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
ACACCACCCAATCTCG	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TGTAGTAAACCCGAGT	alt_5746_new	2	1	3	2	3	4	0	3	3	2
TCGGGATATCTGCTCG	alt_5746_new	19	33	35	26	35	23	31	20	37	22
CGCGCACCGGATGCAT	alt_5746_new	40	56	41	44	56	41	49	32	58	27
GGCCCAGGGAGGAATT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TTGGTTATCATGGATC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
AATGCGCATCGCTGAT	alt_5746_new	107	114	119	122	131	108	144	106	146	111
TAATGCCACCCTCCAC	alt_5746_new	12	7	16	4	16	11	12	12	11	10
GCCTGACCAATCGTCC	alt_5746_new	7	10	16	15	23	10	14	8	16	10
ATACATAGTTTAGCGT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
GCTAGAAACTACATTA	alt_5746_new	0	0	0	0	0	0	0	0	0	0
AACTCTGGGTTCGGTC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
ATGTGAAACTGTACTG	alt_5746_new	7	29	9	10	17	13	17	3	14	12
TGTCGCTGACAATTCG	alt_5746_new	0	0	0	0	0	0	0	0	0	0
GGCTTCGTTTTATACC	alt_5746_new	37	41	34	31	43	29	37	30	51	14
TCATATCGGTGGCCCC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
GAGTGGTTCCTGGGTT	alt_5746_new	18	29	10	15	26	11	20	15	18	14
CCGAGCGCGTATTATT	alt_5746_new	7	30	11	5	26	6	41	10	33	3
AATCCGATTAGAGCGT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CCGCTCTAAAGTCGTA	alt_5746_new	121	199	138	118	168	107	201	109	218	107
CTACTGGCAAATCGGC	alt_5746_new	5	3	13	7	11	8	9	3	13	8
CCACCTCCTGGTACAC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CATTGTATTGCATGAA	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CTCCACTTCTAATTAC	alt_5746_new	17	32	22	27	29	14	39	14	39	12
GGGATCTTATTTTGGT	alt_5746_new	63	84	76	65	60	54	64	52	81	57
GTCAGGCTAGTATTTT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TAGGTACTGATAGCTT	alt_5746_new	68	81	81	60	62	58	77	55	95	56
TTTATTGTGTCCACCT	alt_5746_new	12	14	14	13	22	10	16	14	15	7
GGTGAGCTGTCAATAC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TTGTTTATCTACTTGA	alt_5746_new	33	31	36	31	36	35	47	32	35	27
CTAACCATTTGTCTCT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CCTCCTTGGGTCATCC	alt_5746_new	21	34	18	23	29	15	23	18	22	9
ACGACACCCTATTATA	alt_5746_new	13	14	20	14	11	11	22	12	24	8
TGCTAAATTTCTGCAT	alt_5746_new	94	132	126	114	122	92	126	101	131	88
GGTCCTTTTGTTGACA	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TCATTATCGTGAAAAA	alt_5746_new	13	9	14	10	7	5	11	10	8	1
GTCGATTATGTTTACG	alt_5746_new	0	0	0	0	0	0	0	0	0	0
TAGAGTTATTCGGAAT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
CCTTCCGGCAGCCTTT	alt_5746_new	0	0	0	0	0	0	0	0	0	0
ACGAGAAGTAGGCTCT	alt_5746_new	90	81	98	78	92	68	108	68	95	64
GTTCGCGCCGCCCCAT	alt_5746_new	0	2	3	0	1	2	1	0	3	0
GCCCTAAGGCCCTCTC	alt_5746_new	0	0	0	0	0	0	0	0	0	0
AATGGCAAATCTTTCA	alt_5746_new	13	8	21	12	12	15	28	10	14	7
AAGAATTAACCCTTTT	alt_5746_new	61	58	92	51	64	70	68	69	51	64
ATTATAGTACGCGGTG	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
CCCGGGGCGCGGATAC	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
TATATTACCTTATCTA	ref_4264_fdr	293	154	334	324	151	291	150	279	155	263
GGGGCTCTGCATCATA	ref_4264_fdr	15	15	31	24	8	26	14	16	18	18
GTTTCGGAATCTAGGT	ref_4264_fdr	254	106	296	269	105	234	133	262	119	248
GGCTAGGTATCGGCCA	ref_4264_fdr	136	39	166	147	61	137	44	107	51	108
TATGCAGGCATGTCCC	ref_4264_fdr	84	44	104	117	48	111	56	96	42	93
ACAAGACCCCGCTGCC	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCGAGAGGTCACT	ref_4264_fdr	173	76	217	208	89	170	62	173	92	211
GTCACTTTGTGCCTTT	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
GCTCTCCGCGGGCAAG	ref_4264_fdr	13	5	23	20	8	12	8	10	2	14
AAGCGGACGTTGTTTC	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
GACATGGCTACAACTT	ref_4264_fdr	57	34	65	48	31	57	34	58	18	62
GAAAATCTAGAACAGT	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCCGGCGTAAGCG	ref_4264_fdr	44	21	35	47	19	40	23	42	20	51
AATGGGCAGGCTGTCA	ref_4264_fdr	153	72	147	132	87	107	82	113	93	111
TACGTCCCTCGAGCTC	ref_4264_fdr	89	39	95	104	66	86	58	69	57	95
TTTTCGCCGCCCGATG	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
CATGGTCCCTTAGGCT	ref_4264_fdr	41	14	45	49	17	32	20	44	26	56
CGCTTGAGGGTCCGTG	ref_4264_fdr	23	18	22	32	13	29	7	26	16	14
ATTCATTACTATCGGT	ref_4264_fdr	34	24	46	43	17	34	24	42	15	34
GACTTTTGGATCGGAA	ref_4264_fdr	149	61	175	172	81	141	73	148	58	123
CTTTGACAGGCCACTT	ref_4264_fdr	4	4	6	5	3	3	5	4	5	4
CGGTGACCTATAATCT	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
TAGGATTGACTTAGAT	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
CCCCTGACCCTGGTAT	ref_4264_fdr	14	17	23	23	18	18	23	23	9	21
CCAGGTTACGGATGAT	ref_4264_fdr	130	58	160	149	63	123	76	107	71	122
CCAGATGTGTGGTGTC	ref_4264_fdr	123	66	158	147	66	108	61	119	57	118
GTTTTATTCCTGCTAT	ref_4264_fdr	248	122	295	264	158	242	153	269	148	239
GATATCCTTTCAGCTG	ref_4264_fdr	235	102	300	270	117	248	109	237	100	219
TTCGGTACGCTTATGG	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
TGCTCACCCCTACCTC	ref_4264_fdr	25	14	28	41	19	35	15	29	28	39
TGGGTTCCGTCTGCCA	ref_4264_fdr	111	53	165	117	48	102	57	115	62	99
GTTTTTATATGGCCCT	ref_4264_fdr	51	23	50	51	31	41	18	31	29	31
TGAATACTGGCTCACA	ref_4264_fdr	36	23	48	49	20	44	18	34	17	29
AACCGCTTCCCAGCTT	ref_4264_fdr	20	13	26	16	11	16	13	21	19	14
AAAGTTCTAATACAGC	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
TAATGTGCCTGAGCGT	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
ATATAGGTACGTCAGC	ref_4264_fdr	37	8	22	32	9	19	7	34	9	35
GTCTTAACAACGGCCG	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
CAGTCCTCACATTTTT	ref_4264_fdr	255	140	325	289	165	234	138	240	144	208
AGCACCACATATGCGG	ref_4264_fdr	77	33	122	95	31	86	54	78	33	91
GGGTTTCTACTCTCGA	ref_4264_fdr	66	45	98	77	51	76	57	71	49	89
AGTTTCGTTTTAATCT	ref_4264_fdr	69	32	97	76	37	79	26	67	27	51
AAGTTAACGATTGCTC	ref_4264_fdr	16	16	26	38	9	17	9	13	11	24
GAATTCCTGGCTTTTT	ref_4264_fdr	9	12	26	21	11	14	17	17	4	18
ATTAAAGACTGATCCG	ref_4264_fdr	410	189	555	450	190	442	203	405	174	404
CTCCTAGTCCTGATGT	ref_4264_fdr	14	6	16	20	10	3	8	15	9	12
AAAGACCAAGTCTCCA	ref_4264_fdr	189	84	225	198	101	175	79	178	86	146
CCCGTAAGTATCGTAT	ref_4264_fdr	72	55	137	106	50	73	45	84	65	83
ACCACATGGTTTCATT	ref_4264_fdr	180	53	219	176	51	144	87	155	65	151
GGCACTACGGGTGTGT	ref_4264_fdr	78	17	64	51	28	74	45	70	30	44
GTGTCTTTATATGCAC	ref_4264_fdr	158	82	218	183	90	150	107	171	106	142
TCTCTTCGCGATCTTG	ref_4264_fdr	30	10	29	36	21	20	13	32	10	29
CTGGAGTTTAAGAATC	ref_4264_fdr	31	9	43	39	12	22	15	22	25	27
CACACTTTTGCTATCG	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
ATGGCGAGAGGTCACT	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
GCCCGTGAAGTCCCCC	ref_4264_fdr	49	36	77	61	47	69	52	54	40	54
TGCTATACCCCGACAA	ref_4264_fdr	22	13	45	40	29	25	22	41	38	23
ATCGTCGATAGCGGTG	ref_4264_fdr	158	73	165	152	70	154	64	150	70	137
TCTAATTTGGTCCTTT	ref_4264_fdr	86	22	92	81	29	67	33	78	24	69
TCATCTAAGGCCCCAG	ref_4264_fdr	48	38	79	71	32	53	33	71	37	49
TATCCTACAGCCACGG	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
AGGTTACTCACAAGTA	ref_4264_fdr	137	59	138	121	73	133	63	116	51	131
TAATCGCTACACTCCA	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
TCGTGCATTATGTAAG	ref_4264_fdr	0	0	0	0	1	0	0	0	0	0
GTTAGGCACGGCTCTC	ref_4264_fdr	109	45	139	83	54	105	40	85	47	72
TTAAGACATATGCAAG	ref_4264_fdr	0	0	0	0	0	0	0	0	0	0
ACCATAGAATCATGGA	ref_4264_fdr	63	39	82	76	42	70	31	71	31	47
GCTGGGGTTTTCCCGG	ref_4264_fdr	19	5	25	9	10	13	6	15	5	21
ACTACTTGGTATACCT	ref_4264_fdr	251	128	350	306	176	265	164	296	159	239
AGCGAAGCATGTGCTA	ref_5840_new	59	81	58	53	70	44	70	50	52	48
TGACTTAGATCACTTT	ref_5840_new	0	0	0	0	0	0	0	0	0	0
TTCGGGTTGAGTCTAG	ref_5840_new	0	0	0	0	0	0	0	0	0	0
AACAGGTGAAAGGCTC	ref_5840_new	23	40	25	31	29	17	37	21	23	24
TGTAGCGTCGACCCGA	ref_5840_new	12	8	16	7	18	6	10	9	12	6
TGGTTTGTTGACCATG	ref_5840_new	4	6	1	2	3	6	5	4	1	3
TTTACGCGCTTCGTAT	ref_5840_new	31	35	36	36	61	35	47	29	51	33
AATCGCTGTTCGATAC	ref_5840_new	34	54	35	33	59	40	67	36	55	40
TTAAATCAACTTATAG	ref_5840_new	5	8	5	4	6	5	5	4	3	10
TCTGAAAATTAGGAGT	ref_5840_new	16	21	24	24	27	12	33	14	28	17
ACTCTCGAAGATTATT	ref_5840_new	10	13	16	8	19	10	12	8	17	11
AGTATGCAGGCTCCTA	ref_5840_new	15	31	12	21	25	18	31	13	18	9
TCCCGAGGAGTCGTTC	ref_5840_new	3	11	4	8	4	2	7	2	6	4
CACCCCGGCACTTTTG	ref_5840_new	5	8	4	7	15	6	9	2	17	1
CTCTTGTGAGCCGTTC	ref_5840_new	20	48	36	30	44	33	41	24	58	32
TCAAAATAACGAGCGT	ref_5840_new	13	16	11	9	34	17	13	18	18	14
GTGTCGTTTTCTTTGC	ref_5840_new	89	105	103	79	89	90	99	87	101	60
CCATCCTCGGTTCCCA	ref_5840_new	33	48	42	35	59	30	69	46	73	40
GATGTGTACGTTACTT	ref_5840_new	0	0	0	0	0	0	0	0	0	0
TTTCTCAAAATATCCA	ref_5840_new	40	64	48	38	62	36	69	45	56	38
ATTCTTATACGGCATA	ref_5840_new	38	58	36	35	65	36	55	41	58	29
CGGTCATCTATACCTG	ref_5840_new	0	0	0	0	0	0	0	0	0	0
CGGGTACGACGCGCAG	ref_5840_new	21	20	18	9	32	17	29	6	17	6
TTCCAGTGGTCAGGTC	ref_5840_new	7	18	9	18	16	7	22	16	16	11
TACTTCTACCTAACCC	ref_5840_new	0	0	0	0	0	0	0	0	0	0
CGGTTAGTGCCATCTG	ref_5840_new	0	0	0	0	0	0	0	0	0	0
GATAGACTTTAGTGCC	ref_5840_new	12	17	8	6	17	7	12	5	17	6
TACTAAAGGAGTAGAT	ref_5840_new	14	23	16	13	24	11	22	11	24	14
TTTGGACCTCCGCCTG	ref_5840_new	7	10	9	4	17	1	5	3	5	5
TGACGACAGAACAGTG	ref_5840_new	0	0	0	0	0	0	0	0	0	0
GCCACGATTATCCTCC	ref_5840_new	8	21	20	13	27	15	30	16	27	11
TTGAGATCGATGCACA	ref_5840_new	7	15	5	11	12	12	18	10	21	7
GCGACGTTCGTTAAAT	ref_5840_new	19	29	12	14	28	15	44	14	22	12
GCGTAGCTCCTATTCC	ref_5840_new	2	13	7	9	6	6	5	5	6	5
TCTGCTTGGCTATCCT	ref_5840_new	11	27	20	19	32	15	26	15	36	9
AGTCCCTAAGAATATA	ref_5840_new	14	16	11	12	15	5	11	8	17	6
GCGCAATTGAGACTAT	ref_5840_new	5	13	7	4	6	3	12	5	8	4
AGATTCCGGGTGGCCC	ref_5840_new	0	0	0	0	0	0	0	0	0	0
TCAGAGCTAGATGTTG	ref_5840_new	6	10	6	5	7	12	10	4	17	8
GTTCAACATAAATCGG	ref_5840_new	0	0	0	0	0	0	0	0	0	0
ATCCCTAATTAGTTTT	ref_5840_new	9	12	13	3	6	10	9	10	5	9
TATCCTGGGATTTCAT	ref_5840_new	18	23	23	21	27	10	16	16	17	13
ACTTAGACGCCGATAG	ref_5840_new	7	7	5	3	8	6	11	4	4	6
TCCTAAGTATAACTTC	ref_5840_new	2	5	3	0	3	2	3	4	2	1
GTTCGGTGTATTATCT	ref_5840_new	0	0	0	0	0	0	0	0	0	0
GTCCGAAGCCTTGACT	ref_5840_new	25	42	24	23	59	23	35	24	53	20
GAATCACGCTGTCCGG	ref_5840_new	21	41	31	22	36	19	35	20	41	24
ACCATGGGTTGGCTCC	ref_5840_new	18	14	11	8	21	14	16	12	18	11
TGTTTGGAATTAACTC	ref_5840_new	10	14	6	8	18	10	10	5	15	5
TTCACTACTTGGCGGG	ref_5840_new	8	19	12	10	11	9	12	3	9	5
GCTAATCTAAACTGCT	ref_5840_new	28	35	21	22	39	25	35	21	35	18
CCTTAATCTCTGTCTT	ref_5840_new	27	45	41	24	46	26	39	23	65	23
GGCCTTGATATTCAAA	ref_5840_new	40	92	44	49	90	46	85	47	94	38
TTCTTGTTAAATCTTC	ref_5840_new	0	0	0	0	0	0	0	0	0	0
CCCCTCAGCCTGTCTC	ref_5840_new	24	44	30	39	42	20	48	21	38	27
CAGAAGCGGCTTTTCG	ref_5840_new	0	0	0	1	0	0	0	2	0	1
CACTCATCAAGGTATC	ref_5840_new	7	5	4	13	11	2	9	3	12	2
GACCGTTTTTTTCGTT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
AGAACTCTATATTGCA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCGTTATTGTAT	alt_1943_missing	17	12	12	16	12	7	8	19	15	10
AGTTTTAAATTAACAT	alt_1943_missing	0	4	5	2	8	3	1	5	4	1
CGTCCCCTTTGCTGCT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GCGAACGATTCTGCAC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGGGATCTCTCCTTA	alt_1943_missing	2	4	10	5	4	11	10	5	5	8
AAACTTGAGAACCCTC	alt_1943_missing	5	14	1	5	7	7	4	6	6	4
CTCAGTAACTCGTATA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CAGAGTACCTGCGCGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TCTACTTGTTCCGGTC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TATAACCGGAGACTGG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GCCAGTGATTAGGAAA	alt_1943_missing	5	15	6	4	16	8	16	4	16	5
GTGAGTACCTTTTGAC	alt_1943_missing	9	11	0	3	7	6	3	4	10	2
AAGAGGTGCGAAAAGA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
AGCGCGCTGTTTATTA	alt_1943_missing	0	1	0	1	1	2	0	1	0	0
AGTCCACCCGTCTGGT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CGAGAGTGAGCTAGGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TACACTATTACAGTTA	alt_1943_missing	0	0	0	1	0	2	2	2	0	0
GTGAAGACTCTTTACT	alt_1943_missing	6	10	3	4	8	3	8	6	9	4
GGAGTGGCTGACTAGG	alt_1943_missing	5	5	5	3	2	4	4	5	4	2
CACTACCGCCCATAGG	alt_1943_missing	9	7	6	10	17	4	15	8	12	5
CGTCATCTGTCTTGTC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CCCGCCCGCAAAGACG	alt_1943_missing	3	2	3	0	1	5	3	1	8	3
CTGGCATCTAGTAATG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GGTCGTTATTTTCAAG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTTCGTACATTG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGTTACTGGATTGGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GTCCGCGGGGTGCCCT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CGTTGGATATTCTCTT	alt_1943_missing	11	15	12	10	11	7	18	13	14	7
ACACGCAGAGTTAGCC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GTATACCATTGAGCGT	alt_1943_missing	4	10	5	6	6	3	11	3	12	6
GGGGCTTTACTATATT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GACGTGAAGGCTCGGT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TGTGCAGAAGCATGTT	alt_1943_missing	0	0	0	1	1	0	1	1	0	0
CCTACACTTCTTGACC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
ATTTGACCCTCTATTT	alt_1943_missing	1	2	2	4	4	2	3	0	2	0
CGTATGCTATTCAGAG	alt_1943_missing	3	1	2	3	1	0	4	0	1	0
GGTGGATGAGTCGAAG	alt_1943_missing	5	9	10	10	5	2	11	8	7	1
GTCGTAGCGATTAAGG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCTTCGCATTAT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CAACGCCGCCTTTTTA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GCGGATATGATTTGGA	alt_1943_missing	3	5	3	2	4	3	7	1	3	4
TGGCCTTGAGGGTTCT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TGGTTCCTATGCGGCA	alt_1943_missing	2	2	3	1	3	2	7	1	4	3
ACCGGCGTCCCAGGCC	alt_1943_missing	0	9	2	4	7	1	7	2	6	1
CAGAACTAAATGGTTT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TCCAAATTGTCTTTCT	alt_1943_missing	2	4	4	4	2	3	8	2	3	1
TAAACTTAGGCCAATT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CTAAGTTAGGAAGTTT	alt_1943_missing	0	0	0	0	1	1	0	0	0	0
ACTCAGTTGCGCCGGT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TATGTCGTGTTGTCCG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CGAGCCCCCACAGTAA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
AAAAGACCTAGGTGAT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GGTCGTGCAACCTTGT	alt_1943_missing	4	5	7	2	6	2	4	2	5	0
GGATGTTCGTGGTCAC	alt_1943_missing	1	0	6	1	5	7	8	6	8	6
AGATGTCGTCTACCGG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TTCCTAACTTGGTGCG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
AATATAACCTTCAGTA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGGGGTTCCACCAAT	alt_1943_missing	2	4	2	2	3	1	3	1	0	2
TAACCGTCAGTTTAGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TTCTAGGGAAGGGCCT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CATTCGAAATGCGCTC	alt_1943_missing	2	4	0	4	4	1	4	0	3	1
CAGTGTTAGGCGGCGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
ACCGAGCCAGGCCTAC	alt_1943_missing	2	4	3	1	5	0	6	3	1	0
TGCACTTCTATTGTGG	alt_1943_missing	1	1	2	1	4	3	2	1	0	2
GCTCGGCCATCCGTTA	alt_1943_missing	6	5	8	9	11	5	13	3	4	2
TCGCACCGCATTTACA	alt_1943_missing	5	10	8	6	7	8	13	1	13	3
ATGTCTCCATGTGGTA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CGCTGGGTTACCGGTT	alt_1943_missing	9	10	5	6	8	7	24	2	11	5
AGGCTCTCAGAGTCAA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TGTGGTGAGTCCCTTC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CTTTTGGGGTGAAGGT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CATCTCTTGTATATTT	alt_1943_missing	10	5	3	5	10	6	2	4	8	4
TAACTACTCTGCATTT	alt_1943_missing	16	22	29	28	22	17	34	19	32	17
TGCCCGTTATAATTAG	alt_1943_missing	12	14	18	10	19	21	17	13	14	24
TCTGTGAAGTATCATT	alt_1943_missing	2	2	3	3	1	4	1	3	2	1
CTTAATGCGATCTGCC	alt_1943_missing	6	9	9	6	8	6	5	1	12	3
GCATTCATATCGATGA	alt_1943_missing	0	5	6	4	6	4	4	4	4	1
AGCTTTGCACTAAGCG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CAGCATTCGACCAATT	alt_1943_missing	7	7	9	3	18	9	13	10	11	8
AACACTGCATCGATTT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
ATTATCTGCAGATTAC	alt_1943_missing	10	9	17	9	17	13	14	6	15	13
GCACAATCGCCCCTGT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GTCCCCCGTTCTTGGT	alt_1943_missing	0	1	0	1	0	1	2	1	2	0
CTTAGTCAGTGTGTGG	alt_1943_missing	5	11	5	7	9	3	10	2	11	3
AAATGTTGCCTCTAGA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GTATGGAACATTACGT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TTCCATGCGCCGTGGT	alt_1943_missing	0	0	1	0	0	0	2	0	0	0
CTGTCCACTTTAGGGT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GCTTCCGATACCTTCA	alt_1943_missing	4	1	3	6	2	3	7	3	3	2
ACCATGGATATTACAT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TTTACAGTCCTCCCAT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGAATTTGCAGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CAGTATTCTTTCGCCT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TTAATCGACTCTCGAG	alt_1943_missing	0	0	0	0	1	1	0	0	0	0
GAGTCCCAGTAGGATC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CATGGCCCCCTCGCAA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CGGCTACATCGTTTCA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CTATCCAGGCTTCCAT	alt_1943_missing	0	2	2	0	0	0	2	0	1	0
TAGTTCCCGTGCAATT	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CTGTTGGAGTTTTGAT	alt_1943_missing	4	6	11	8	16	11	13	8	8	7
AGAAAAAGCTCGAAGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TCATGTTACTTAGTGT	alt_1943_missing	9	31	17	14	29	11	17	19	19	8
GTCGTCATGCTTACAC	alt_1943_missing	0	0	0	0	1	3	2	1	2	0
AATTGAGGGTCATGTC	alt_1943_missing	6	7	12	13	7	11	13	8	10	6
TCTCATGTGGGGCTAG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
ATTTCAAACGTCTCCC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TGCTGAGTGCTGTCGC	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
AGTGGACACCGTCCCT	alt_1943_missing	0	3	0	0	0	1	1	0	0	2
GCGCTCCTCTAAGGTA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
ATTTAACCTTGGTAGG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TATACCGAGTTAAATG	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
CCACTTCGCTGCTCGA	alt_1943_missing	0	0	0	0	0	0	0	0	0	0
TTGTTCTCCTCTTTAG	alt_3594_reverse	30	88	39	36	72	31	82	42	87	50
TAGCGCCATTGCAGCC	alt_3594_reverse	6	4	12	9	4	9	7	7	5	10
TACAGAGCCAATGATA	alt_3594_reverse	10	23	16	10	25	5	19	10	23	13
TGCCTTGCTACATTGG	alt_3594_reverse	100	152	137	95	146	92	139	110	138	93
TGGAATATCTTGGTAG	alt_3594_reverse	27	27	26	22	24	22	32	31	40	23
GAATGTACGTCTGAAT	alt_3594_reverse	63	75	79	58	106	51	83	52	104	45
CATCCGCCTTGACAGA	alt_3594_reverse	8	7	4	4	9	7	7	4	4	5
GTCTTCCCCGACGCAT	alt_3594_reverse	8	18	14	6	23	10	20	7	13	6
AGCTGATTGCTTGAAG	alt_3594_reverse	61	79	54	57	52	60	53	40	76	52
AGGGCTTAGCTTTCAC	alt_3594_reverse	11	14	16	10	11	9	8	7	10	13
ACACAACCTGCATTGG	alt_3594_reverse	29	55	41	30	47	19	49	23	63	32
ATTAGCCGCTATAAAC	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGCAGCTCTCTTA	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
ATTGCCCATCAATGAG	alt_3594_reverse	5	0	0	1	0	0	1	1	2	1
GCTTATTCAGCGTACC	alt_3594_reverse	5	6	4	5	12	4	10	13	11	2
CTGTGGTATCCCCTTC	alt_3594_reverse	17	15	11	10	13	20	27	12	17	13
GAAATTTTGCAGGTTG	alt_3594_reverse	140	192	174	171	188	131	176	130	213	133
TTCATGTCTCAACGGT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
AGTAGTATATTTTCCC	alt_3594_reverse	13	17	14	19	24	14	17	14	17	10
GAAATTCGCATCGTCT	alt_3594_reverse	9	17	16	18	17	8	27	10	20	23
GAAAGTGACGTGTTGC	alt_3594_reverse	7	10	8	10	12	5	16	10	11	10
CTACGCCGTAATGACA	alt_3594_reverse	43	95	51	48	95	38	129	37	111	36
CAGGATCACTAATCAC	alt_3594_reverse	30	27	33	44	29	34	33	25	26	28
GTAGGGACGTCTTCCG	alt_3594_reverse	24	29	40	23	39	31	33	29	29	19
ATTGTGTCTGAACCCG	alt_3594_reverse	174	198	159	143	198	143	202	139	230	146
TCTCTCCAAACGTCCT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
AAGACTCTAAGTTTTA	alt_3594_reverse	60	84	68	54	74	62	94	51	92	54
GAGTCTAGTGCTAATC	alt_3594_reverse	53	73	65	54	71	58	108	49	105	62
CAGGACATTTGCTCTT	alt_3594_reverse	7	7	8	7	8	8	13	8	6	6
TTATCTCCACTGCGTA	alt_3594_reverse	50	66	38	50	80	48	77	28	76	40
ACACAATCTGTAGGAC	alt_3594_reverse	23	31	42	32	50	33	36	30	35	20
CAACACTCCATAGGCA	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
GTAGTCTAATACACTC	alt_3594_reverse	12	74	15	23	64	11	79	14	83	10
TTGGTTATCCGGCTTG	alt_3594_reverse	39	43	48	24	39	35	47	32	51	41
TTTTATGTCTTAAGGG	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
GGACCGGTTCAGATCC	alt_3594_reverse	8	11	11	10	11	7	12	12	12	4
TCTCAATCTTTCGTGT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
CGATAGGCTTAATGCT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTAACATCTGGTCCAG	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
GTACGCAAATAAATGC	alt_3594_reverse	17	22	22	25	23	16	20	11	19	13
CGGGGTTAGCTTTCTT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
TCAGCACCCCGTTAAG	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
TTTGCCCGCAGCCTGC	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
GGTTCTCGTAGCCGCG	alt_3594_reverse	13	13	11	14	10	17	14	7	15	11
CGAGGTGATCATTGTA	alt_3594_reverse	20	16	21	13	18	16	34	22	22	9
CCCCACAATATTTTGT	alt_3594_reverse	32	28	34	26	34	24	32	13	51	21
CGGCAAAATCTCCGTG	alt_3594_reverse	67	142	82	74	125	63	151	72	140	78
CCCTGGCCTTTATCTA	alt_3594_reverse	92	107	90	96	118	113	103	83	126	83
TTGGATGGAGGGTGGA	alt_3594_reverse	29	29	24	31	41	24	32	20	34	26
TCTGGCCCACCCTGTT	alt_3594_reverse	122	165	149	122	181	119	166	126	159	128
TTGGATCCATTTATGG	alt_3594_reverse	11	17	12	7	10	11	18	12	14	9
AAGTGGGCTACCGGAG	alt_3594_reverse	41	50	65	47	40	27	60	41	60	37
CTTTCGCTTATGCGAC	alt_3594_reverse	21	37	20	18	17	21	38	15	54	19
TCTCCTCCTTATCGGT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCCCAGGAGATCT	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
GCAACGAGGCACCTCG	alt_3594_reverse	0	0	0	0	0	0	0	0	0	0
TCGGGGAGTGGATTGT	alt_3594_reverse	115	157	146	135	170	118	202	131	151	113
CCACGCTAGGCATCGA	alt_3594_reverse	37	61	62	56	73	52	62	58	53	53
CGCCAGGTTGGTACGC	alt_3594_reverse	3	6	0	4	1	3	3	1	6	1
GGATCATCCCCGATGG	alt_565_upstream	11	20	17	10	10	6	6	8	9	11
GGGTAATTATATTTGT	ref_565_upstream	43	31	45	31	38	23	36	25	50	24
CAGGTGGTTGACTCTC	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
GAACCCATAATAGTCA	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
TTATGGGAATCATTCA	alt_565_upstream	20	30	44	33	15	40	22	30	24	29
ACTTTGGGGGTTTCCT	alt_565_upstream	43	27	42	40	21	43	43	37	33	35
TGTAGACACCTTTGCG	alt_565_upstream	16	9	22	19	16	23	15	17	19	23
TCGGCTGTTATTTATC	alt_565_upstream	205	156	274	219	163	213	165	183	209	172
ATGGCGTGATTGTAAA	alt_565_upstream	10	6	19	12	7	9	15	5	12	11
GCACTTAGTACTGTAT	alt_565_upstream	37	40	47	43	27	50	36	37	26	33
TAGACCGGCCCATCCT	alt_565_upstream	7	11	10	5	7	4	6	5	14	8
ACAAGTTTCCATAGGT	alt_565_upstream	16	10	26	19	11	18	8	16	11	14
CTGGACTTGGTTCGGA	alt_565_upstream	25	16	29	26	30	27	26	20	29	23
ACCGTTCGTTAGCCGT	alt_565_upstream	35	40	34	43	47	30	60	23	63	18
GCCTATACTTCATTGC	alt_565_upstream	12	7	15	12	9	20	11	9	12	10
AATAGCTAGAAACTTG	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
ATGATCGATTGACCGT	alt_565_upstream	35	31	46	22	34	31	20	29	32	27
GAATCTTATAAGGAAC	alt_565_upstream	21	21	36	22	22	23	16	30	21	24
CAGTTATATCCCTTGT	alt_565_upstream	54	46	91	70	32	62	41	67	47	58
AGACTTATGCAACTTT	ref_565_upstream	133	111	159	146	148	136	125	146	145	139
TCTATAACATCCTCAT	alt_565_upstream	29	15	23	33	15	25	27	28	23	30
GCGGACACTTCTTACC	alt_565_upstream	18	13	21	21	25	17	29	23	21	15
GGTTCAAGGCCGCATC	alt_565_upstream	79	68	101	92	76	89	87	95	90	83
AAAACGCTTCTCGCCC	alt_565_upstream	29	8	24	28	27	38	12	29	17	24
TAGGCACTGTCCCACG	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
GCTTGTCGCTTGGCAG	alt_565_upstream	35	44	46	39	28	29	48	33	43	32
CACGTAGGCAACTCCC	alt_565_upstream	35	38	52	54	33	17	43	42	37	31
TATCATGTTCCTATGC	alt_565_upstream	49	22	32	27	25	22	27	34	29	22
TTCGCTCAAACGCAGG	alt_565_upstream	5	5	6	11	7	3	8	5	6	6
AAGCACACTTCATGGT	alt_565_upstream	36	34	53	51	24	41	39	38	26	35
CCAAAAGCGCCTTCTC	alt_565_upstream	0	2	7	5	1	1	1	3	1	5
TGAGTCTTGTCTTAGC	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
GGGCTCACTGAACACG	alt_565_upstream	65	64	66	76	55	71	68	79	73	67
GGGGCGTCTGCGATCC	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
TCATCTATTTGCTAAC	alt_565_upstream	120	80	124	115	87	101	95	102	79	119
TGTGGTCGGCTGTAGG	alt_565_upstream	73	46	88	73	56	62	47	64	50	62
CGGGACTACGGAAAGC	alt_565_upstream	97	65	107	78	84	78	67	102	69	65
ATTCATCTCGTTAAAC	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
CTCCCTATTGGGACTT	alt_565_upstream	25	21	31	15	28	33	30	24	31	21
TGCTCACTAAAGTTTG	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
CATCGTGTTGCCGGGC	alt_565_upstream	23	17	18	11	20	26	19	24	17	12
TTTATCACCGGCACGG	alt_565_upstream	15	6	19	8	9	21	10	21	4	12
ATGCAAACAACCCAAG	alt_565_upstream	4	2	6	1	2	1	6	7	3	3
CGTTGTGTGGTCACTC	alt_565_upstream	60	49	58	69	55	58	52	68	62	58
GGAGTCATATATTGCC	alt_565_upstream	43	38	73	34	30	36	41	53	41	35
GTTCTCTTGCGGCCCT	alt_565_upstream	13	7	20	11	14	11	11	17	9	15
CCAATAAGGACGTTTG	alt_565_upstream	17	17	19	11	22	8	18	15	24	13
TTTTACCTAAAAAGGG	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
TAGGTAGGAGACTACT	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
GTTAGAGTTGTCGACC	alt_565_upstream	48	33	43	38	25	36	28	31	42	47
CTCGGGCCGAACAACC	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCGTATCTTCGGT	alt_565_upstream	23	20	32	34	17	39	21	21	20	26
ATTAACTATCGGACGT	alt_565_upstream	13	14	18	16	14	16	12	17	15	16
AAACCGCAGCCATCGG	alt_565_upstream	23	18	32	39	23	25	19	21	26	20
GTTTAGCGTGCTTACC	alt_565_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCTGCGTTATAGT	alt_565_upstream	21	27	40	18	16	21	20	7	10	16
TGCACTAGCTAACGAT	ref_565_upstream	35	18	32	43	28	33	19	52	28	31
GCTTGTGTTTCACTGA	alt_565_upstream	186	149	203	206	169	180	154	164	148	188
TCCCAAGTTACTCGCG	alt_565_upstream	56	30	66	57	34	58	52	58	46	38
AGGGTGTAAAGTGGTT	alt_4012_RC	26	13	28	29	17	26	16	30	10	24
ACACGCCTCAGTACGT	alt_4012_RC	20	16	29	27	22	27	19	21	21	9
TTCGTCTCGTACTCCT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CTCTTATGTTATACTT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TTGGTTGCCGCGCCAG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TCTCACACCCATCCTC	alt_4012_RC	47	33	72	41	30	41	23	37	36	40
TAAAGATGGTTCCGGC	alt_4012_RC	12	7	12	9	6	13	6	8	8	9
GCCTGGTAAACGGCAC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TAGCCGCGAATAGTAT	alt_4012_RC	26	23	23	25	27	27	19	31	30	16
TCTGTGATCTAGGCAT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GGCCGTTTAATGCTGC	alt_4012_RC	48	31	63	69	28	47	19	46	40	47
TGCCCACTTGATATCA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TGAGATTTGGAAACGT	alt_4012_RC	46	17	39	24	12	31	21	36	25	23
TTGCCGAGTGTAACTA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CATGCAGATAGTTCGC	alt_4012_RC	2	3	1	3	1	0	3	4	0	2
GAATACCCTTAATTTG	alt_4012_RC	27	11	29	38	20	20	18	33	14	28
AAGCGGATGGATACTC	alt_4012_RC	7	4	8	11	5	9	10	9	7	5
TCAGTGCACCGCTTTG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
ACTTTGAAAATCCATG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TTGTTAGTCGTTGTAC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CGTGAATCTCTACAGC	alt_4012_RC	16	8	21	18	11	16	9	12	10	18
ATGCAACATAAGGCCT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GCTGGATTATATAAAG	alt_4012_RC	10	13	13	15	6	19	6	11	5	14
GCATTACACTTTTCAG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TGTTTTTGACACTTGA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GAATCGGTGGTCAGGT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CATGGCATGTACTAAT	alt_4012_RC	11	5	20	13	6	14	5	12	11	13
AGAGCATAGATCTCGA	alt_4012_RC	12	10	14	14	16	12	10	19	19	18
GTACGAAGCTCGCTTA	alt_4012_RC	13	3	19	13	6	10	3	7	7	11
TCTACATTCTATCTTC	alt_4012_RC	22	8	29	25	11	22	13	17	10	29
ATGCCCGGTACTCTGT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CGCCCTCAACGTTCGT	alt_4012_RC	21	18	24	26	24	19	13	24	16	18
AGGGTTTCCCTATGCG	alt_4012_RC	42	26	56	43	18	32	21	28	14	36
AAAGCGACTCTGCCAC	alt_4012_RC	3	0	0	0	0	1	2	0	0	2
GGAGACGCATAAGAGT	alt_4012_RC	31	14	33	30	22	28	11	16	16	29
TCTCGCAGATCCCTCT	alt_4012_RC	7	4	15	7	5	8	4	5	6	12
GCCTCCCCTTGCCTGG	alt_4012_RC	22	22	12	13	26	13	23	9	24	16
GATTCGTTGATTTTAA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TATCATTGGAGTGCAT	alt_4012_RC	1	6	6	4	2	6	2	4	3	3
ATTCCTCATTCGCGGA	alt_4012_RC	23	11	20	29	17	28	11	18	15	22
TGAGTGGATTCGCTGT	alt_4012_RC	14	15	15	22	5	15	5	12	10	13
GCCTCATGTTTGGCAA	alt_4012_RC	7	0	0	2	1	2	2	5	2	1
CCGTCCCGTATTAAGC	alt_4012_RC	21	14	37	27	21	26	22	29	27	19
GCCGCTGTATTAGCAT	alt_4012_RC	17	29	43	41	33	21	27	35	22	19
AAGGCAGAAGTATATC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
AACAATACATTGCACA	alt_4012_RC	14	19	20	20	13	15	6	23	13	23
TCGGCTTTGCGGAGTT	alt_4012_RC	9	8	17	9	9	6	4	9	9	11
CTTGGTAATAATCGGT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
AGCTCTATGTTAAAAT	alt_4012_RC	60	33	50	54	32	54	34	43	49	43
GAACGCTCAATCGGTA	alt_4012_RC	17	4	16	14	6	9	7	9	9	5
TTGTATTCGGTGAAAT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
AATTCACGTGTGTCGG	alt_4012_RC	70	50	125	108	58	88	66	96	76	97
TTTCGCTCTCAGTGAT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CCCACGGCCTGGGTTA	alt_4012_RC	29	10	37	35	17	21	14	28	24	22
GACAGATTATGCCCCC	alt_4012_RC	62	40	83	61	29	46	33	56	30	59
TTCTGTGTTTTCGACA	alt_4012_RC	8	4	7	8	6	5	1	3	7	8
GCTATGGCCAACTTCT	alt_4012_RC	148	105	222	189	94	175	103	148	116	144
CTTGTCGACTAGTACA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GGTAACTTGACTGGCC	alt_4012_RC	3	6	8	7	1	7	1	7	3	8
GTGCAATCGTCGGTTG	alt_4012_RC	11	8	16	12	7	15	14	13	14	8
GGAGGGTACAGTGTGA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TAGACATTCGTATACC	alt_4012_RC	10	1	12	6	2	6	3	5	2	6
CAAACGCTGTCTTCTT	alt_4012_RC	15	15	34	24	9	17	8	24	17	11
CGAGGTTGTCTGAGCG	alt_4012_RC	10	3	19	15	8	6	7	9	4	14
GACTGCCCCCCGGAAC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TACCTTACTTCGTGGA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CCACTGTTCCTTACTG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
ACGGATGCTATCTCAG	alt_4012_RC	14	12	15	10	8	8	5	13	4	10
GGTGCTGCCTCATCGG	alt_4012_RC	48	37	59	59	35	65	40	59	29	40
CCTTATGACGGCGCTG	alt_4012_RC	18	17	44	21	13	31	12	22	12	25
ATTAACCCTTTTGTAG	alt_4012_RC	111	45	127	103	40	68	50	108	42	64
CCGGATTCTCGAGTGA	alt_4012_RC	50	47	68	63	29	42	29	60	30	59
TGGAACTTGCCGTTTG	alt_4012_RC	20	12	27	17	8	16	5	9	6	12
CATCGAATCTGTGTCG	alt_4012_RC	40	26	48	39	43	35	44	35	43	36
TTGAATCGGTTCGCCT	alt_4012_RC	39	26	37	39	17	29	22	24	14	28
TTATATGAGTATAGTT	alt_4012_RC	75	65	99	86	67	92	70	83	44	86
CACTTAATCAGCGTGG	alt_4012_RC	30	22	30	31	15	29	35	24	12	24
GAATTCAGTCGAGGCA	alt_4012_RC	9	3	10	1	4	12	2	4	1	3
TTCGGGTATCCAGAGT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TCCCCGAAACTTATGT	alt_4012_RC	2	11	3	1	21	0	13	4	9	1
TACGCTCTTTCATCCC	alt_4012_RC	68	32	73	59	31	53	22	68	28	55
GCATGCTCAATGTATG	alt_4012_RC	12	3	16	7	6	9	5	12	11	7
CCTTTATTGATCAGCG	alt_4012_RC	14	2	12	10	11	8	12	14	6	14
CTATAGGGTCTGTATA	alt_4012_RC	66	47	80	91	38	85	48	64	48	64
CCGCGGCTATTGTGAT	alt_4012_RC	26	31	47	41	23	30	26	24	25	22
CACACTCCCATTGCAG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TGTTGGGCGCTACTGG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TCGGCCCGCTGAATGG	alt_4012_RC	32	24	32	37	27	17	22	31	27	25
TGTAATGACGCCAATT	alt_4012_RC	61	20	68	59	17	55	22	50	27	43
CTGGTCCCTTTATAGA	alt_4012_RC	23	13	23	13	16	16	14	18	22	11
GTTTTGATTCGACACA	alt_4012_RC	11	11	16	23	9	10	5	13	8	10
GTACTGCCGGCCGTCG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GTATCCCCTTTAATGG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GTTAATCGATTAAATT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TTCGGGAACTTTGTAC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GAGGTTGGCCATCTTA	alt_4012_RC	23	9	32	18	11	18	14	19	10	24
GAGCGCGGTCCAAGGG	alt_4012_RC	19	6	21	11	12	11	5	22	13	13
GCGTGCGATCCAACTC	alt_4012_RC	31	19	50	46	15	38	22	27	19	30
TAGGGTTTTCGTATGA	alt_4012_RC	85	46	82	69	38	75	51	61	33	59
TTGACGATGCTCTCTT	alt_4012_RC	115	56	128	124	67	125	66	128	65	112
TGCGCCAGTCGCCCCC	alt_4012_RC	85	37	95	91	35	84	49	91	54	78
GGCGCTCTATTGAGCA	alt_4012_RC	15	5	23	12	7	16	4	8	7	12
AGTCGTAACGGAGTGC	alt_4012_RC	68	52	90	63	49	61	59	84	44	71
AATGCGTTAAAGCGTT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TAGAATGCCCCGTCTG	alt_4012_RC	24	14	40	18	21	26	16	32	16	23
GAGCTAGAGTAATTTC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TGGTGGGCAGTGGCTT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GGCCGAGGGTCTCTGT	alt_4012_RC	35	14	49	48	21	36	23	32	21	38
GCGCTAATTACTCATC	alt_4012_RC	67	30	83	62	29	70	33	57	31	49
AGAACTTTTCGTACCA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CACTGCATTATAATGT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
AGTTCCCTCATCGCTT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CAGCCAGTCCGCATTT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TTAGCTCACCATTCGC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GTTCGCCACCAGTGTT	alt_4012_RC	4	0	2	0	0	3	2	0	0	0
AATCGGTAAATTTTAT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TAACTAAGCCCCCGCT	alt_4012_RC	24	16	21	15	12	16	9	11	10	17
ACGTCGGCCGTATTAG	alt_4012_RC	111	61	108	112	62	85	68	89	70	84
TCAAGCGCTGTTCGCT	alt_4012_RC	12	12	19	9	9	16	7	18	9	12
CTGTCTCCTCGCATAT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TAAAGCAATTATCGCA	alt_4012_RC	82	25	110	70	31	93	54	76	50	74
AGAGCTATGTGGAGCT	alt_4012_RC	27	16	28	27	13	28	11	19	16	19
CAAACTCCTTTAGGGC	alt_4012_RC	48	35	71	64	50	41	36	46	38	46
GCGCTATACTTCTCAC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
AAGCGGAGCTAGCCCC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GGGATTGCGTTAGAGA	alt_4012_RC	14	4	17	11	15	17	10	6	11	13
ATATCCTTTTCAATGC	alt_4012_RC	4	3	14	7	5	9	9	7	3	14
GTCGCCCAATACTAGC	alt_4012_RC	1	2	2	3	3	0	0	1	3	2
CCGTCTCTGGCTCATT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CCTGAATTAATTTCTC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
AGTCATCTTTACAACA	alt_4012_RC	49	30	43	44	31	48	30	60	20	38
GTCGCATCTACTGAGA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TATATGTTGGTGACAT	alt_4012_RC	58	20	53	57	16	61	26	46	26	41
GTAATCTAACTTAACT	alt_4012_RC	51	30	60	53	34	40	33	43	45	48
CTATCAGACCTTTAGC	alt_4012_RC	0	0	5	1	1	8	0	3	4	4
AGCAATTCCGTATTGG	alt_4012_RC	59	37	63	59	31	41	23	52	38	48
GGCCTGCTACTTCTGC	alt_4012_RC	12	8	12	19	13	14	11	11	10	14
TACAAAGTGCACAGCA	alt_4012_RC	36	23	48	23	29	39	28	40	34	29
AGGCCTTGTCTTTACA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
TATCTCCCACGATTAG	alt_4012_RC	58	23	61	65	35	39	37	45	50	65
CCAGGGTAATGAAGTA	alt_4012_RC	12	16	20	14	25	25	20	26	19	10
GCTGTACGTCTTGATC	alt_4012_RC	118	89	134	112	68	116	73	103	72	101
TTAGTCTATTTTTGGG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
ACGAATTGAGTCACAG	alt_4012_RC	37	21	48	35	27	41	25	29	28	30
TCGCACGCCACAATTC	alt_4012_RC	44	25	71	62	22	50	19	60	27	62
CTTTTCATCCAGGTTC	alt_4012_RC	28	21	36	45	20	37	20	28	22	31
GCATAGATACTAACAA	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
AGCTGCTCTAGAACAG	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
CAACATGCAGCTGGGG	alt_4012_RC	3	5	1	2	1	3	2	4	3	1
TCAACATCGAAACCTG	alt_4012_RC	49	20	66	62	19	48	23	48	21	42
TTCTTTCTCAGTTCCC	alt_4012_RC	0	0	1	0	8	3	2	3	4	1
GGGCTTGTTTCGGTAC	alt_4012_RC	10	9	27	22	13	13	9	17	6	15
ATTATAACATTGTCCC	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
ATCTAGTTCCGGATAT	alt_4012_RC	13	6	20	11	9	8	7	10	15	12
AGATCATATGCTTTTT	alt_4012_RC	0	0	0	0	0	0	0	0	0	0
GCCGCCAATTCATCCG	alt_4012_RC	7	0	8	2	3	6	7	5	3	6
CTGTCTTTTTCTTGTA	alt_4012_RC	26	15	29	28	14	27	10	35	6	24
GGCTTCAATATTGTTT	alt_4012_RC	2	3	8	10	5	11	2	6	2	10
CGTTTCTGAACGTTTA	alt_4012_RC	1	1	3	2	1	0	3	1	2	3
CGAGCTATTTGACCAC	alt_4649_RC	51	34	61	60	40	53	49	48	40	45
GCACACACTGTATCGG	alt_4649_RC	61	63	93	80	55	68	62	55	71	53
GTTACTTTAACGCAGA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
ATCTCGGTGTTTGAGC	alt_4649_RC	41	35	53	25	38	32	45	27	38	29
GCAGGTTTGTCGGGTT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TTCACGCAATCCTGTT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TACAGTCATGCTCTGT	alt_4649_RC	21	27	33	21	50	32	39	30	35	15
AAAGTCACTACAGTAG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CGTAGATTTATGTCAG	alt_4649_RC	5	5	6	4	6	7	8	8	7	6
CCGTGGGATTGCCACG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CAACTTGCAGAAGTTC	alt_4649_RC	13	11	12	25	11	14	15	23	14	12
TTTCATTCCGATATCC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TTCTAACAAGAGCAAG	alt_4649_RC	10	26	14	26	21	27	21	19	23	21
GCGCGTCGTCGCTAAG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TTCCTCCTGTTCGTAG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TGCATGACTAGCAGGA	alt_4649_RC	62	49	78	47	51	70	56	43	65	45
ACGCTTCGCGTAGTTA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CCTTACTGCATTATGA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TTTTTCTCATAATCCT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TTCCGGCATTCACTTA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
ATTATGATTGCTGCGG	alt_4649_RC	7	7	11	3	9	7	3	13	8	6
TTACTCTCTGTCGAAC	alt_4649_RC	38	42	37	34	34	31	26	31	33	39
TCTACAGTTTCCAAGT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
GGGCGCCACTATTTAG	alt_4649_RC	3	5	4	3	2	4	0	3	6	1
CGTGCAGCTCTTCGCG	alt_4649_RC	53	47	63	53	52	40	56	43	57	54
ACGTGTTACTGCAAAG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TCAACTTTGTGCCGGA	alt_4649_RC	42	48	61	48	42	33	39	32	37	33
GCGAGCTTCCATGTCC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CGTCCTCCAGGTAATT	alt_4649_RC	19	9	18	17	17	12	18	22	15	13
TTAGACAGGCGGTCTT	alt_4649_RC	9	14	8	14	9	18	9	10	9	13
GCCGAATCCGTGTACA	alt_4649_RC	14	11	24	28	31	22	25	19	26	10
CGGTTTTCTATTGCTC	alt_4649_RC	5	8	4	5	3	9	2	4	4	1
TCTTTGTGTAAAATTG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CCTATGATTGCTGCGA	alt_4649_RC	25	25	33	27	27	38	32	27	29	19
TTCACCATTTTTTCTC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CGTGCCAGATATATCT	alt_4649_RC	13	13	16	12	17	10	21	9	13	15
TGATGTTTAGAGTGCA	alt_4649_RC	67	59	77	77	65	69	92	61	80	63
TAAGTTGGAAGAATAG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TGCGCCAGACTTACCA	alt_4649_RC	2	10	7	8	16	7	7	6	10	4
CGGCTTTGAGCGAACC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
GGCAGTAAGACGAATG	alt_4649_RC	22	18	24	22	17	14	16	19	15	17
ACGTCGGTTGAACTAG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CTTCCAGGTGTACTCG	alt_4649_RC	11	41	32	15	36	30	47	24	37	19
TTCGAGGCTAGATGCT	alt_4649_RC	19	15	11	14	6	10	11	10	12	8
GTTTGTGAGGCAGCTC	alt_4649_RC	31	17	28	31	24	22	24	27	11	17
CATCCGTGTGATGGTT	alt_4649_RC	26	29	24	34	34	27	17	36	21	20
ACGAAACTTAGCCCTC	alt_4649_RC	12	6	11	14	12	12	10	8	10	10
TTGTATAGGCAGTAGG	alt_4649_RC	17	22	33	30	15	37	28	28	39	29
CTTCATTACGACCATC	alt_4649_RC	18	13	18	13	10	6	17	11	8	10
GGATTTTCATGTTCCC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
ATTCTGGTTAGGGTTT	alt_4649_RC	21	23	20	12	18	16	17	22	18	15
GCGAACTCGTTTTCTT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
AGAGGGCATTACCAAC	alt_4649_RC	9	6	6	7	10	3	7	2	6	2
GGCCCCACGATTTACG	alt_4649_RC	22	16	34	32	14	25	18	25	18	26
CCCTTGGTTTCCCTTT	alt_4649_RC	8	1	4	2	0	4	5	10	6	5
GCTTACCCTCCCATAC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
GATGTTTGGTAGGGTT	alt_4649_RC	26	15	34	20	26	19	20	15	18	8
ATCGGGTCGGTGGTTA	alt_4649_RC	39	44	51	59	42	41	46	51	59	32
TTCCGGAGGTTTCGGG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
GTGTTTGACAGTGGAG	alt_4649_RC	17	8	14	23	9	18	15	17	20	14
AGGTACGGTCAATAGC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CTTTACCACGCCTAGA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
AGGGCTCGTCGTTTGA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CCGGGTTTTAGTTTGG	alt_4649_RC	12	18	10	17	17	17	18	18	16	20
TGATGACCCATGTTGA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
AACAGGATATCCGTTT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TCTTATATCGAGCGCA	alt_4649_RC	52	46	77	56	44	50	39	55	50	55
CCAAGGTATTTCCGGA	alt_4649_RC	31	18	35	31	20	29	22	25	27	30
GACGCTCCCGTTTAGG	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TTCCCTTTTGGGGGGC	alt_4649_RC	12	14	13	20	18	11	24	11	9	8
TTGCCCTTATTGCTTA	alt_4649_RC	15	11	28	11	18	13	7	12	10	15
GTCAGCGTCCTACCTA	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
TAAGTGCTACTTGGGC	alt_4649_RC	16	16	25	21	12	11	24	9	19	11
TCGTTTGGTGCATCCA	alt_4649_RC	6	5	6	8	7	9	6	10	5	5
AAGATTCGTCACGTTC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
AAGCGTTCATACTGCT	alt_4649_RC	33	34	36	34	29	29	33	40	44	26
GCTTAGATTAACTTAT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
CTTCTATTAGTCCTCC	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
AGCCTGATAGTAACGG	alt_4649_RC	23	26	20	10	18	20	26	19	28	21
CTGAATCGCTTACTGT	alt_4649_RC	12	9	12	19	21	10	14	16	12	10
GCGAGTTGCACCCCAT	alt_4649_RC	11	16	26	15	10	9	17	13	5	12
CAAAGCCTGAGCAACA	alt_4649_RC	46	40	53	48	47	50	29	58	23	40
TCGAGATTCCCCAGCT	alt_4649_RC	0	0	0	0	0	0	0	0	0	0
ATTCTTAGGTTTATGC	ref_6071_new	428	411	519	386	443	386	478	396	466	372
TCGGTGTGGACCCACT	ref_6071_new	8	6	7	6	6	7	5	6	8	6
TAAGAGACGTAGGCCG	ref_6071_new	73	70	75	72	57	70	82	50	72	48
GCACCACTAGGGACGG	ref_6071_new	0	0	0	0	0	0	0	0	0	0
GAGTCATCGGCTAGCG	ref_6071_new	0	0	0	0	0	0	0	0	0	0
TAGACTCTCGGGCCGC	ref_6071_new	7	13	16	11	17	12	14	9	11	11
AATGCACATGTTGGGT	ref_6071_new	31	38	38	32	39	29	27	28	35	24
GCGGAACTCCTAATAT	ref_6071_new	19	31	31	20	20	29	36	17	26	23
CCCCTTGAAGGGGTAT	ref_6071_new	24	31	20	30	38	29	37	23	39	25
ACCGACCGACTTTATT	ref_6071_new	0	0	0	0	0	0	0	0	0	0
TCTTGGTCGTGCCTAA	ref_6071_new	161	176	186	164	188	158	203	155	187	171
ATTGCCCGCTCTGATT	ref_6071_new	0	0	0	0	0	0	0	0	0	0
TGGCCCTTCCGTTAAC	ref_6071_new	5	11	13	11	8	11	14	10	11	7
CTCCGGATGGATGGGT	ref_6071_new	25	47	35	25	33	27	37	37	44	31
CGCATTTGACGGAATT	ref_6071_new	98	149	105	97	156	73	130	69	152	91
AACATCGCGTCACATG	ref_6071_new	13	10	7	8	15	15	7	13	14	9
TAATAGTTCCTATTGT	ref_6071_new	2	6	8	1	5	3	4	8	7	4
CGTGCCGGTTTACAGC	ref_6071_new	31	25	27	23	24	25	43	27	34	32
CACACGACTGCTGCGG	ref_6071_new	19	13	21	17	20	12	25	26	25	12
TAAACGGTACCTATTT	ref_6071_new	0	0	0	0	0	0	0	0	0	0
ACCCGGTGTTGTCAGC	ref_6071_new	42	51	72	46	56	44	64	30	72	41
GGCTTTTGCGTAATTA	ref_6071_new	24	26	25	27	29	22	27	29	35	18
TAGAAGATCAATTAAT	ref_6071_new	13	6	8	3	9	2	5	9	5	1
CGCGTGGATTTTTGAC	ref_6071_new	41	55	45	43	41	42	46	36	59	51
GATTTGTGAACCACGT	ref_6071_new	84	59	61	68	69	61	79	63	84	49
GGTCCTACAACGTACG	ref_6071_new	0	0	0	0	0	0	0	0	0	0
TCCAAGACAAGCGTTT	ref_6071_new	35	36	32	27	58	38	48	28	49	22
CGCTAAGTTTACGAAA	ref_6071_new	117	139	157	129	154	126	151	107	149	103
GGGACGGGGTTATTTC	ref_6071_new	10	5	4	3	9	0	8	1	5	3
GCGTCTGCTAGTTACG	ref_6071_new	61	82	79	53	71	73	71	54	73	54
ATTTGTGTCTATGTGC	ref_6071_new	18	23	22	13	25	10	20	20	16	5
GCGTCGCGGGTTGGGG	ref_6071_new	27	34	40	29	27	16	18	22	22	22
AGCATAGGCATGCGGT	ref_6071_new	8	10	8	12	16	13	14	10	11	9
CGCTTGGGCTAATTAA	ref_6071_new	11	8	9	7	6	5	6	6	5	2
ATGTTCGTTTGCTCTG	ref_6071_new	11	20	14	17	11	13	11	13	18	16
GCACCTGCCACGCGAG	ref_6071_new	2	7	14	0	5	3	6	13	9	1
GCGAAGACATGATCAA	ref_6071_new	60	61	79	72	76	67	70	55	83	58
GGAGGCAGTCTCTAGA	ref_6071_new	0	0	0	0	0	0	0	0	0	0
GACCTTTCTTGTTCTG	ref_6071_new	160	175	243	154	158	160	149	111	135	130
CCGCATAAAGGCCGTA	ref_6071_new	0	0	0	0	0	0	0	0	0	0
CTCTATTCTTCTACCT	ref_6071_new	66	63	74	76	75	59	73	73	85	50
TTTTGTTTCAGCACAC	ref_6071_new	27	45	37	32	47	38	44	18	44	33
CGCTTGTGACGATGTC	ref_6071_new	5	6	9	2	4	3	4	5	3	4
TAATATTGTGCGTTTG	ref_6071_new	22	19	24	17	34	20	26	11	19	17
CATCGAGAACATAATA	ref_6071_new	13	13	24	15	17	17	22	17	14	15
TGAGTACGAATCGTTC	ref_6071_new	25	33	27	32	24	25	38	27	46	20
TAAGTGACTCTCAGCT	ref_6071_new	0	0	0	0	0	0	0	0	0	0
CAATCGGTCCCCTGTG	ref_6071_new	69	85	57	54	57	47	90	52	66	50
TATAGGCATTTCTCCG	ref_6071_new	13	26	14	15	13	11	13	13	5	13
TCCCCGATTCCTTCTT	ref_6071_new	0	7	1	2	10	1	5	0	9	0
TCGGGCGTTCCAGATA	ref_6071_new	33	33	36	29	43	30	46	27	56	26
TGCATACACGCTTTGT	ref_6071_new	62	72	69	78	91	60	102	50	89	63
CGGTAAACCGTGATGG	ref_6071_new	0	0	0	0	0	0	0	0	0	0
GTCACTGTATTCTCTA	ref_6071_new	30	24	34	29	31	31	31	28	41	24
TGGCCCCAACTCGGCA	ref_6071_new	0	1	0	1	0	2	0	1	0	1
CAATATCTTGAATCTA	ref_6071_new	43	44	53	65	43	35	38	34	47	44
GTAAACAGCAATGGAT	ref_6071_new	67	65	88	83	63	68	67	76	77	63
GTCAAAGAGAGATGTG	ref_6071_new	0	0	0	0	0	0	0	0	0	0
ACCATTTATCGTAGCA	ref_6071_new	12	14	21	12	17	18	19	15	25	5
GCCGGAGCAATAGTGA	ref_6071_new	0	0	0	0	0	0	0	0	0	0
ACGTAGATGGTGCCGA	ref_6071_new	10	21	7	13	11	19	16	10	10	7
ATCGATTCCTCTGGAC	ref_6071_new	10	8	8	9	7	8	9	6	9	4
TTCCTATATACAAGGT	ref_6071_new	57	46	68	58	74	36	56	65	58	36
GTTAGTAGCGCATTTT	ref_6071_new	0	0	0	0	0	0	0	0	0	0
CTATGATCTTCGCGCG	ref_6071_new	67	84	51	47	83	56	68	42	104	37
GATCTCCATCAGCTTT	ref_6071_new	50	59	52	58	66	51	68	47	77	39
TCTGAAAGTGCCGTGA	ref_6071_new	33	44	58	37	55	37	74	29	61	24
TATGTCCATCCAAGTT	ref_6071_new	46	28	56	55	39	32	40	32	51	28
CGACGTCTACCGTTAT	ref_6071_new	11	45	18	16	44	16	42	11	30	7
CAATGGCAGCTTCTAA	ref_6071_new	0	0	0	0	0	0	0	0	0	0
TGTTTTCATGTTGAAA	ref_6071_new	0	0	0	0	0	0	0	0	0	0
ATCTAGCGGCTTGTAG	ref_6071_new	5	10	5	9	11	5	5	9	6	8
CTACAGTCCAGTGTAT	ref_6071_new	81	121	131	114	142	99	148	100	135	79
ATATGGGCTTCTCGCT	ref_6071_new	0	0	0	0	0	0	0	0	0	0
AGTCGCCGGGATACGT	ref_6071_new	0	0	0	0	0	0	0	0	0	0
CAGGCCGTATCTGTAT	ref_6071_new	20	84	29	22	82	31	86	18	85	16
TTGCTGCACTCGATGC	ref_6071_new	0	0	0	0	0	0	0	0	0	0
AAACATTCTGGGGCCT	ref_6071_new	23	32	36	27	34	33	39	28	37	30
ATCCCGGGAGGTGCAA	ref_6071_new	0	0	0	0	0	0	0	0	0	0
GGTGAACATAATGCCG	ref_6071_new	14	22	21	10	20	14	15	16	16	14
CTTGGTACGATTCCGT	ref_6071_new	64	107	77	61	131	42	105	48	98	48
TTTGGCACCCTGAAAT	ref_6071_new	50	62	60	52	66	52	72	47	63	42
TGGTGCATGTTGTCCG	ref_6071_new	5	5	9	5	10	6	11	5	9	4
TTCGTACAATCGATGA	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TTCTACTAGCCGGTAC	ref_5268_fdr	71	31	51	64	73	31	81	46	72	45
TCATTGGAACCTGGTG	ref_5268_fdr	35	41	55	38	32	37	30	38	31	27
TGAAGTTTAGCAAAGG	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
AGATAAACCTAACTCA	ref_5268_fdr	25	29	29	17	28	16	22	25	25	19
CAGTAGAGGGTCTTTT	ref_5268_fdr	65	98	117	90	90	66	100	63	108	54
TTACCATAAGGGATCA	ref_5268_fdr	20	15	15	16	24	14	16	19	16	13
TTGGTTGCTGCGAGTG	ref_5268_fdr	28	16	53	33	31	34	24	31	25	28
TCGTACCCCCTCGAGT	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAGTCCTCGGGGT	ref_5268_fdr	3	6	3	6	5	5	5	4	5	1
GAGGGGTGTGTTACCA	ref_5268_fdr	54	70	60	55	69	54	72	56	69	51
GGTAGATCCGGCCCTC	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
CATCGCCTAGTTACAT	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TTAAGGTTTGCGCTCT	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTTTTCAGGTTCC	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
GCTCGCGGGGCGAGCA	ref_5268_fdr	26	29	35	17	24	21	37	34	31	30
CACATTGGCTGTTGTC	ref_5268_fdr	10	15	10	18	12	11	14	13	11	17
GGGTCCCCTGCATCGT	ref_5268_fdr	3	17	6	8	17	12	12	13	19	8
TTAGATATTCCCTGTT	ref_5268_fdr	10	10	7	3	7	5	11	8	5	15
GTCAGTATGGTTATGT	ref_5268_fdr	49	47	68	69	68	63	56	53	71	43
ATTATCTCTGGCGTCC	ref_5268_fdr	0	1	2	2	0	1	0	1	0	1
CAGTGCTACATAGCGA	ref_5268_fdr	8	12	12	5	12	9	9	4	13	5
GGCTCCAGGAGTGTTC	ref_5268_fdr	15	20	18	17	19	12	15	10	10	11
CTCAGGCTGTTCTTTT	ref_5268_fdr	63	47	59	57	63	53	82	42	68	40
CATTAACGGTTAGAAA	ref_5268_fdr	43	67	57	53	57	62	62	50	64	40
TATTAAGCCATATGCT	ref_5268_fdr	31	21	30	26	37	27	31	41	39	31
CCTTTGCTCTTTCTTA	ref_5268_fdr	22	19	16	11	18	19	22	15	29	7
CATTCATCGTGGATGC	ref_5268_fdr	16	21	25	18	24	24	20	17	17	26
CATAGGCGGCAATTCG	ref_5268_fdr	46	49	70	58	47	47	39	39	38	51
GTCCTCCGTGGTCTTT	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCTGATCCAGTGC	ref_5268_fdr	12	22	4	10	19	7	17	6	20	2
GCTCAATGCAATTTTG	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCTTGTACCTTTT	ref_5268_fdr	7	11	1	3	11	6	9	5	7	4
ATCAACTTCGCGTACG	ref_5268_fdr	11	19	13	19	14	11	17	14	6	7
CTGTGTATTCCCCAGC	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TCTTACAGCACGCTAA	ref_5268_fdr	21	36	31	26	23	23	35	21	35	24
GCTAAGTTACTTAGGC	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
CGCGTTCTTTCCACTG	ref_5268_fdr	52	50	55	64	67	55	66	72	63	48
AGCATATAGGCAGCGC	ref_5268_fdr	31	13	30	15	19	11	19	19	20	10
TGACACGGTTTTTCAG	ref_5268_fdr	44	51	59	41	62	37	56	44	58	36
CTCGCTCTATTGATTC	ref_5268_fdr	18	18	16	15	12	13	16	10	31	9
CCACCCTCTCTTCGAG	ref_5268_fdr	45	71	52	40	44	45	49	40	44	40
CCTGTTTTCACACATT	ref_5268_fdr	54	57	63	44	77	43	64	36	62	51
GATTCTTTGCTCTGCT	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTAATCCGTTCGC	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TCCGATCAGGTGTGTT	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
GCCGCACTCGCTCCGC	ref_5268_fdr	64	58	70	68	54	67	62	68	76	62
TACTAGAGCCTAACGT	ref_5268_fdr	59	117	58	45	100	46	104	55	123	46
TTTGGAGTAGGTCAAT	ref_5268_fdr	7	8	9	8	6	5	5	1	5	4
TTTATAAAGTAATAGT	ref_5268_fdr	11	23	20	25	31	9	22	20	31	26
CAGAACGCCGTAAATA	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TTCGATTGTGCGGTTC	ref_5268_fdr	14	18	15	24	15	12	31	9	20	12
CCGCACCTAAGTACCA	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTGCAATCCGGGT	ref_5268_fdr	6	0	6	2	4	4	4	1	1	4
AGCCCACTCGGCTGTC	ref_5268_fdr	4	5	2	1	6	3	5	5	6	7
TAGGCAAAGTCACGTC	ref_5268_fdr	34	48	58	41	56	48	61	27	57	37
CCTTAATTCACGGACG	ref_5268_fdr	27	28	34	36	34	23	35	22	22	25
AGCTCGGGTTTGGTCC	ref_5268_fdr	24	26	23	18	23	28	29	22	26	23
AATGTAGGTGGCAGCG	ref_5268_fdr	17	25	33	41	33	26	40	33	35	24
GCTAGCATAGCGCTGT	ref_5268_fdr	21	13	19	13	21	21	13	21	29	11
TTTTCGGCTGCTTCGA	ref_5268_fdr	31	23	30	24	21	27	22	34	23	21
ACTATGAAATTTCTAG	ref_5268_fdr	24	36	24	13	24	13	29	19	32	15
CTGGTGCCCCACGGTG	ref_5268_fdr	44	47	43	47	50	49	46	35	56	37
GCAACTGGGCATCGTG	ref_5268_fdr	28	41	29	31	38	32	34	27	42	32
GACGTCGGTCAGTCTG	ref_5268_fdr	11	10	12	10	14	10	14	12	9	11
GTGATAGAAGGTATTG	ref_5268_fdr	25	23	34	26	23	31	30	20	32	24
AGACCAGGAGATTCAT	ref_5268_fdr	25	26	37	21	31	30	34	32	31	18
ATGACGTCCTCCTTGT	ref_5268_fdr	6	4	8	4	4	4	1	2	1	3
ACTTTGGAATTACATA	ref_5268_fdr	15	22	19	20	11	11	20	16	16	16
CCTTATCCGAGGTCTT	ref_5268_fdr	53	64	48	53	48	46	89	56	90	54
TCCACTCCCTGGGTCG	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TACGGCCAAAGACTTT	ref_5268_fdr	58	55	39	52	56	37	44	37	54	49
CTCCGAGCTTGTGTCC	ref_5268_fdr	5	8	5	2	7	2	15	8	7	6
CGTACGTTGTGCCAGT	ref_5268_fdr	52	74	73	58	81	38	92	55	64	38
GGGCACGCGCCGCTGC	ref_5268_fdr	57	68	92	76	74	47	64	45	71	54
CGGGAAAATTTTTATG	ref_5268_fdr	108	112	126	132	105	127	98	111	138	106
AGTCTGTCGAAGGACT	ref_5268_fdr	31	38	28	27	44	31	33	31	40	21
GCATTATTGTCAATTA	ref_5268_fdr	16	30	11	15	17	12	21	10	21	11
ACTTGAACGCGCCGGG	ref_5268_fdr	30	25	26	25	25	20	18	27	28	21
TAGTTCAGGTGAGTCG	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
GTGCTACAAGCGTTCG	ref_5268_fdr	21	23	38	19	29	19	24	22	19	17
CTCGTTAGAGAGTTGG	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
AGTGAGCAATCACAAA	ref_5268_fdr	53	43	68	72	59	50	64	55	69	67
CTGCAAATGAATCGGG	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
AATTGCCCCTCTGGGT	ref_5268_fdr	96	134	131	104	100	100	106	109	114	78
TGCAGGAATTCCGCTC	ref_5268_fdr	35	37	51	42	34	37	42	33	27	31
AGAATGCTCCAGAGCA	ref_5268_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATGGGTCATCCT	ref_5149_missing	38	24	35	27	39	33	21	30	30	38
ACAAGGGGGGTCCTTG	ref_5149_missing	65	65	53	47	54	53	57	60	61	52
GTCCGCTAAAAAGGTG	ref_5149_missing	47	36	56	41	30	41	31	24	33	37
GAGATTCGCATTTAGT	ref_5149_missing	27	26	30	24	19	13	19	13	20	17
CTCTCTGTACTCGGAT	ref_5149_missing	51	60	86	66	52	52	50	58	56	58
CGTGTCTGGGCCTCAA	ref_5149_missing	179	137	194	194	146	181	159	146	170	159
TGCCGCCAATGACGCG	ref_5149_missing	25	9	39	28	17	31	20	32	19	15
CGCGTAAAAGGGCCCT	ref_5149_missing	99	63	76	81	61	79	70	89	73	73
CCTTCCTTTATCTGTA	ref_5149_missing	0	0	0	0	0	0	0	0	0	0
TCGGGACTCTTGTTCG	ref_5149_missing	0	0	0	0	0	0	0	0	0	0
CGGACGATGTTAGCTC	ref_5149_missing	198	212	268	197	220	176	205	174	210	183
GGTAGGTGCATTCATT	ref_5149_missing	6	17	18	15	12	17	9	14	16	7
CCCTGATGAATGGTCC	ref_5149_missing	7	23	27	24	22	20	11	17	24	13
ATTGCGTTCAAGTTTT	ref_5149_missing	17	11	17	13	17	16	19	24	22	20
TAAAGTCGCTCTAGAA	ref_5149_missing	0	0	0	0	0	0	0	0	0	0
ATAGCCTATGGTCACC	ref_5149_missing	44	31	54	31	40	46	50	42	40	34
TCGCGAGCGCTTTATA	ref_5149_missing	40	32	42	21	37	38	30	30	33	23
TCATCTATTTTTTACG	ref_5149_missing	40	26	39	33	43	32	43	33	36	34
ACTCTATTACTCTGCT	ref_5149_missing	0	0	0	0	0	0	0	0	0	0
TGTGCCCGGCTAACGC	ref_5149_missing	569	469	692	571	477	523	472	466	539	470
AACTTCGCAATTTTGC	ref_5149_missing	9	14	15	12	9	7	7	13	7	11
GCTAAATGGTTTCAAG	ref_5149_missing	5	8	17	9	3	10	8	9	11	5
CGTTAGCGCCTACCTG	ref_5149_missing	11	18	22	21	24	16	30	15	27	13
TCACATTTCGGAGCTG	ref_5149_missing	0	0	0	0	0	0	0	0	0	0
AACCCCTGCATAGATA	ref_5149_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTAGTAACCCTA	ref_5149_missing	73	55	83	94	58	64	66	80	75	62
TCATCTTCGGTTGCAG	ref_5149_missing	8	7	12	6	6	12	6	9	5	5
AGCTCAGGTGGCGTCT	ref_5149_missing	23	38	29	44	29	30	31	42	26	21
GAGGGAGGGAATGCGC	ref_5149_missing	33	39	38	43	25	31	19	25	31	37
ACCCTCATCATACATC	ref_5149_missing	0	0	0	0	0	0	0	0	0	0
AGCGAGTTGGCCTACT	ref_565_upstream	64	63	90	60	81	52	53	64	69	44
ATGGGCCGGGCTACTT	ref_565_upstream	58	75	78	60	76	48	63	53	90	57
GAGATCTTCTAATTCA	ref_565_upstream	0	0	0	0	0	0	0	0	0	0
CACTCTCGTGGTGGCT	ref_565_upstream	54	58	71	61	46	51	67	45	62	52
CACTTGGCATTTAAGT	ref_565_upstream	29	33	25	25	39	25	28	39	25	20
AGGTGGGTAGCTTCTA	ref_565_upstream	50	39	63	68	55	40	44	58	57	39
TTTATGGCCGGAAGGG	ref_565_upstream	0	0	0	0	0	0	0	0	0	0
GCAACGTGTTAAACGT	ref_565_upstream	39	27	33	31	34	29	37	37	38	28
TATCTACGTAGGGTTT	ref_565_upstream	19	36	36	21	31	32	20	23	38	26
CCGTTTTTGCATGGTT	ref_565_upstream	34	55	35	37	66	30	72	29	61	28
TCCAGATCTTGCTTTG	ref_565_upstream	0	4	1	0	3	1	9	0	3	0
TTGGGTTCCATGCAGC	ref_565_upstream	275	301	360	312	320	267	334	280	341	243
AGACTTTATTCCTTGC	ref_565_upstream	74	88	100	89	89	81	91	94	110	66
ACTCTAGACGAGGCAG	ref_565_upstream	0	0	0	0	0	0	0	0	0	0
CACTGTACGGGACGTT	ref_565_upstream	18	22	14	18	15	13	18	19	24	12
CATCGTTATATCATGT	ref_565_upstream	37	40	41	36	34	32	38	31	38	19
TATATAGTTTATGTCT	ref_565_upstream	36	48	40	30	38	38	35	40	42	48
CAAGGCTCTCGCGGCT	ref_565_upstream	0	0	0	0	0	0	0	0	0	0
TTTTACTACGGTTGTA	ref_565_upstream	25	21	21	22	28	13	16	18	26	13
TGTGTTTTCCGTTTCT	ref_565_upstream	44	46	60	62	53	59	49	46	45	36
TCATCCCCATTGAGCA	ref_565_upstream	23	40	19	26	22	24	29	29	33	31
GCTATCCTAGTCTCTT	ref_565_upstream	46	64	55	34	56	47	62	43	51	35
TACGAGTGATCGTTAG	ref_565_upstream	194	206	223	197	228	169	234	172	208	192
AGGGAATGCGTACACA	ref_565_upstream	44	33	49	43	43	47	49	38	57	49
TGAGATAATAGTATGA	ref_565_upstream	34	48	29	24	31	33	40	23	43	32
CTTTATGATCTGAGAG	ref_565_upstream	18	37	30	22	29	26	28	26	21	27
GGCGCTCAATAAATAT	ref_565_upstream	62	89	82	70	72	73	106	89	84	50
TCTGCCTGAATCGCCC	ref_565_upstream	0	0	0	0	0	0	0	0	0	0
TTTTGTCTTCCATCCG	ref_565_upstream	61	80	100	70	81	60	82	56	91	52
GAGCTTCACTGTCATG	ref_565_upstream	20	24	39	35	33	28	43	31	41	26
CTGGATCGCATGTTGG	ref_565_upstream	17	25	28	24	25	20	15	11	24	15
TGCCGCTGCTTCAAAG	ref_565_upstream	19	62	35	29	46	39	60	24	65	30
TGCTGTTGTCTAAGCG	ref_565_upstream	1	13	5	7	9	12	7	5	2	8
GCTCACCAATTCGGCT	ref_565_upstream	11	12	17	9	13	9	9	13	13	10
CCAGATTCTGGTATCA	ref_565_upstream	34	42	41	37	44	24	28	33	25	20
TATCCAGATCGGATAC	ref_565_upstream	170	164	196	164	211	132	211	142	207	171
ATTTGCCTGGGCCGCT	ref_565_upstream	0	0	0	0	0	0	0	0	0	0
GTAGTTACTGTCTTCT	ref_565_upstream	20	17	31	32	16	26	23	22	20	15
ACAATGGCACTCTATC	ref_565_upstream	93	98	112	97	95	82	101	92	94	91
TACGTTCCTTGGCTCT	ref_565_upstream	69	56	75	62	92	74	60	63	72	59
TGAGCCATCCCTCTCT	ref_565_upstream	14	24	24	25	23	27	26	25	29	24
GGCGCTATTGGCCGTT	ref_565_upstream	0	0	0	0	0	0	0	0	0	0
TTAATAAGAACCTCCC	alt_6027_new	6	5	2	5	4	0	7	2	6	2
TGGTTAGAGAAGCAAA	alt_6027_new	12	10	8	8	12	9	15	9	20	12
ATGTACGGAACGTGGG	alt_6027_new	0	0	0	0	0	0	0	0	0	0
CAAATTTTTTTCATTC	alt_6027_new	43	41	41	31	65	52	59	32	45	27
AGCGTTGCACTTTGTC	alt_6027_new	13	13	9	8	6	8	9	5	11	5
TCTTCGTTACCCATAG	alt_6027_new	6	8	11	7	17	4	10	2	15	9
GTCAGTTCATGGACTG	alt_6027_new	55	62	40	36	81	35	68	45	98	36
GAGAGTCAAATTGCTC	alt_6027_new	21	32	13	20	30	28	28	13	26	23
AAAGGTGTGACTCTAA	alt_6027_new	21	30	37	21	39	21	48	22	41	19
AGTTAATGGCCCCTTT	alt_6027_new	7	8	3	5	5	8	6	2	8	1
CGGCCTCTTTAGGTGC	alt_6027_new	60	77	63	63	64	42	61	32	85	34
TGCTGGTCACCCCTGG	alt_6027_new	0	0	0	0	0	0	0	0	0	0
GAGCGGCAGATATGTT	alt_6027_new	89	140	97	76	143	86	116	79	130	66
TCGCGTCATGATGTAT	alt_6027_new	11	18	8	8	10	7	10	5	9	6
CCCTATGTATGTTCAA	alt_6027_new	0	0	0	0	0	0	0	0	0	0
CGTGGGTTAGTTCAAT	alt_6027_new	34	71	44	47	90	35	77	40	50	27
GAAGTCTTACGCTCTT	alt_6027_new	0	0	0	0	0	0	0	0	0	0
TGATATTGGCCACAAG	alt_6027_new	5	15	4	8	8	5	6	7	7	8
TTGTAACAGTGTGTGC	alt_6027_new	15	31	21	4	13	13	17	20	23	14
TACTTTTTATGTAGTA	alt_6027_new	13	14	4	7	13	0	17	8	13	1
CCACAATCTGCGGGGG	alt_6027_new	123	168	123	100	128	94	150	92	172	77
GGTCCGAGCACTCTGC	alt_6027_new	122	204	169	115	201	121	195	102	176	109
TTTTTCTATGTGTGAC	alt_6027_new	71	125	59	69	102	65	113	78	106	70
CAAGGGCCAACCCTAT	alt_6027_new	51	86	56	44	99	60	120	42	82	35
GGGCGGTAGGTGAGAC	alt_6027_new	29	47	18	19	22	18	37	24	30	21
GGTACCACTTTAGACG	alt_6027_new	0	0	0	0	0	0	0	0	0	0
CATTGTAAGTCAGATG	alt_6027_new	12	20	17	17	17	10	18	9	22	9
ATGGGGACGGATCCGT	alt_6027_new	26	40	47	41	58	46	53	27	58	35
ATTAGGTATGGCCCTC	alt_6027_new	9	20	10	12	24	7	21	22	13	11
CTGTGGTCCGCTGAGG	alt_6027_new	7	14	12	8	14	5	10	10	15	6
TGGATTTTGAGCACTT	alt_6027_new	8	12	3	10	13	8	22	5	15	5
TGCTATTGGTGCTGCA	alt_6027_new	29	53	38	35	28	26	44	12	55	38
TTGCAAAGTCCTGCCG	alt_6027_new	0	0	0	0	0	0	0	0	0	0
GAATGCCCCGCCTGCT	alt_6027_new	76	95	75	47	89	66	100	49	108	47
CAAGCTGAATTAGGGG	alt_6027_new	1	2	1	0	2	3	1	1	0	1
ATAAGCCATGACAAGA	alt_6027_new	3	7	1	3	9	4	5	1	8	3
GTGAATCATGCTCGAC	alt_6027_new	0	0	0	0	0	0	0	0	0	0
GCCCCTAGGAAAGGCA	alt_6027_new	12	13	7	12	20	12	24	8	11	9
CCGAAGTTACGCCACC	alt_6027_new	0	0	1	0	1	0	1	0	0	0
AAGTGCTTCGGTTACA	alt_6027_new	2	15	4	6	10	6	9	6	9	2
TGCCTGTCCATTCCAT	alt_6027_new	34	59	73	47	47	46	58	40	52	43
CTAGCTTAGAAACCCG	alt_6027_new	0	2	1	0	0	4	1	4	0	1
TTGCGTCTCGACGTTT	alt_6027_new	39	45	45	37	67	35	54	39	69	26
TGGGAACGCTTAGGAT	alt_6027_new	232	363	301	248	372	228	395	240	401	232
CGAGCAAGCATCTGTG	alt_6027_new	8	22	22	12	24	9	31	15	37	13
AAGTAATCCTTTAGAG	alt_6027_new	10	9	6	6	16	9	13	9	18	3
CTCCTAGTTTGTTTAA	alt_6027_new	16	64	32	30	58	23	76	16	63	19
CGCGCGCTAGGTTGTC	alt_6027_new	44	80	57	32	62	36	61	39	53	38
GCCCACCTTTCGTTTG	alt_6027_new	59	129	115	93	169	71	134	67	144	52
ACTTGCGTTAAACTCA	alt_6027_new	70	130	117	93	153	75	133	91	153	75
ATGTCATCTGCCCGTG	alt_6027_new	18	23	31	14	24	9	20	15	27	11
TCATCCAGTTGTGTCG	alt_6027_new	24	35	20	30	37	24	25	14	34	16
TGGGCTTCTTGACACC	alt_6027_new	8	17	10	14	22	3	14	13	18	6
CGCACATGCTTATTAG	alt_6027_new	10	9	5	8	7	13	11	8	10	4
GTTTCCCTTGGTCGCA	alt_6027_new	2	0	0	4	4	4	3	0	4	3
GTCCTCCGACACGAGG	alt_6027_new	8	17	8	8	22	13	12	8	8	11
CTCTTGTAGTCTTTCT	alt_6027_new	4	9	4	3	9	2	8	5	11	1
TCGGGAAGAAATCCAC	alt_6027_new	57	81	64	56	86	54	77	59	73	47
TTAATTTTCATTGCGT	alt_6027_new	0	0	0	0	0	0	0	0	0	0
CTGATAGATGCATATG	alt_6027_new	4	0	1	2	4	1	5	4	4	0
AGTTAAGGAGCTTATA	alt_6027_new	1	5	2	4	2	2	2	2	6	0
CGCCCTCCCGCGGCTG	alt_6027_new	15	35	21	16	21	24	22	13	37	17
TCCTGTCGCCTATCGG	alt_6027_new	2	10	9	3	15	6	10	1	6	5
CATCTATATAGCGTTA	alt_6027_new	15	20	21	20	26	12	20	18	28	20
TCTTGTACGAGTCCCT	alt_6027_new	4	6	7	2	7	4	10	6	14	5
GCCTACCGGCTGTTGC	alt_6027_new	30	38	39	28	33	18	50	25	72	19
TAGCTCCTGTTTGGCT	alt_6027_new	61	94	59	72	128	51	115	71	130	48
GAAGGCGCAAACTCAA	alt_6027_new	0	0	0	0	0	0	0	0	0	0
GCCAGCCCCTGTCATA	alt_6027_new	3	8	2	3	24	2	23	2	27	2
ACCCTGGCGCAGCCTT	alt_6027_new	10	24	10	16	19	11	32	14	18	11
TGTGTGCCCATTGATG	alt_6027_new	10	23	12	19	17	15	30	15	17	9
GATCGTATAGCATTCA	alt_6027_new	35	66	62	28	54	44	56	28	69	33
ACTAGCACCAGCGCGA	alt_5145_missing	7	1	7	13	11	3	2	1	5	7
TTCAGGATACTTTTTC	alt_5145_missing	33	22	21	26	24	23	33	28	36	34
TCACCATGCGGTCCTT	alt_5145_missing	31	25	28	31	28	14	34	29	31	17
ACATGCCCATACACCA	alt_5145_missing	5	10	7	6	10	10	10	15	4	9
CAGATGCTGGGGGTGA	alt_5145_missing	40	44	47	53	47	44	58	41	62	38
GCCAGCATACCGACGG	alt_5145_missing	1	7	6	2	3	0	3	1	4	5
CTCATTAGTATACGGC	alt_5145_missing	13	14	13	12	14	12	9	7	10	3
GCACTTTTCGGCCCTA	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
AGGTCAGTCGTGGGGC	alt_5145_missing	26	25	24	35	29	28	35	45	24	30
TAGTGTATTGTGAACG	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
GTGCCAGCTTGACATG	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
TAAAATATTAAGGGCT	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
ACGGCACTGTCTAGCG	alt_5145_missing	49	46	41	37	31	31	42	30	43	35
TGACTCTGAGCTACAG	alt_5145_missing	5	4	6	4	3	4	3	4	0	3
ACTCATACGACTGAGA	alt_5145_missing	12	13	8	12	17	8	10	11	7	6
GTATCTAAATGATTGT	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
CGGACGCGACATTAGC	alt_5145_missing	32	49	45	47	64	39	34	38	63	39
ATTGCGCTGTCATCTG	alt_5145_missing	6	10	10	10	6	9	10	10	5	5
CTGCGTTAATCAGGTA	alt_5145_missing	24	13	19	25	19	21	20	15	18	10
ATCACCAGAATATGCT	alt_5145_missing	10	24	21	17	16	15	23	15	21	16
CGATTCGCAATGGTAG	alt_5145_missing	6	8	4	5	4	1	5	2	1	1
TTGGGTCTTATCGAGG	alt_5145_missing	58	52	65	45	51	42	66	71	56	48
ATGTGTTTCAGCTCTA	alt_5145_missing	17	27	18	23	29	12	21	16	23	22
CGCGTCTTATCGGCTA	alt_5145_missing	6	2	11	7	7	3	4	7	4	7
TCGTTATGTTGACGTC	alt_5145_missing	11	9	9	9	4	14	8	14	12	6
TGTTCAGGGTGCAAGC	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
CACATAGAATTAGATG	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
TGGGGTGTTTTCGAGT	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
ACACCATCTGTCCTAT	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
GCGGCGGTCGGTCATA	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
CCCGATTATCATCCGA	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
TACTCGTCAACTTGCG	alt_5145_missing	24	27	29	8	48	13	23	16	38	20
ATGTGGGCGGTCATTT	alt_5145_missing	28	28	31	31	37	26	31	30	32	29
CGCATTTTCAATGGTC	alt_5145_missing	10	26	5	8	20	6	17	13	17	7
CTTCTGCGTATATGTC	alt_5145_missing	18	31	28	25	22	23	32	26	41	21
TTAATTTGAACTGTGA	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
TTGTGGGCCCGAATAA	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
AATAAAACGTTGTGTC	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
CGGCGCATTATGATAT	alt_5145_missing	39	53	51	52	55	39	77	28	82	55
CTCGGGGTAATTTTTG	alt_5145_missing	32	28	45	49	40	39	38	35	43	27
TGTTTGGTTGTCTGAT	alt_5145_missing	14	10	7	9	15	16	4	4	15	9
TCGATTTCTGCCCTCG	alt_5145_missing	4	10	10	1	6	6	8	7	2	3
CTTTTTCTATTGCGGT	alt_5145_missing	5	7	4	7	1	7	6	7	1	5
TAAGTGAGTTAAACCA	alt_5145_missing	25	37	50	31	42	31	45	25	40	26
GCCCGAATCGATGAAC	alt_5145_missing	7	22	11	13	29	7	23	5	45	9
AGGTTACACGATGGTG	alt_5145_missing	48	52	53	41	38	47	36	40	39	43
GGGATGAAAGCTTATT	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
AGCTTGTTCAAAATCG	alt_5145_missing	37	37	43	28	41	34	38	37	55	31
GAGGCCACTGCTCGTA	alt_5145_missing	0	0	0	0	0	0	0	0	0	0
TAGCCAGGTATGCGCA	alt_5145_missing	17	36	26	18	30	10	25	17	30	17
ATGACCCCATCCTATC	alt_5145_missing	51	58	65	66	78	66	61	58	76	49
GCTATACAGGACTCAC	alt_5145_missing	49	46	45	45	53	45	59	45	51	31
TCTTACTCTTTTGTTA	alt_5145_missing	20	36	21	25	20	20	30	6	27	21
AGTCTATTCCACAGAG	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TCCACGTCTAGGCGCA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TGTTATTACCTTCTCA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TGTAAATTAGGGGAAT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GCCAAACGCTAGCTTT	alt_4425_missing	7	24	8	5	14	5	19	9	16	2
CGTGGTCCTCTCTCGT	alt_4425_missing	27	44	35	19	50	22	34	25	61	21
ATTCTGTTTCTTTGTT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TGGAATTCGACTACAA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GGGGGTTTATCAAACG	alt_4425_missing	26	63	15	22	55	21	60	27	48	24
ATCGTCTTGTCCAAAT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TCGCCCTACGACATTA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
CACCCACATGGTGTGC	alt_4425_missing	5	20	3	2	16	4	25	6	22	5
TGCTCGCTTTTTACCT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GCTTTTTTCCATCCGC	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TTTATGAGCCCCTCGT	alt_4425_missing	12	36	18	20	40	15	24	17	31	16
TGCTTTCGTATGTTGT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TGATCGATTAGTGGCG	alt_4425_missing	4	10	11	2	8	10	6	9	12	5
GTCTAAACGATTACCC	alt_4425_missing	18	28	11	20	37	9	35	18	37	15
AAACCCATATCACTCA	alt_4425_missing	8	18	6	7	11	6	14	3	10	5
GTTCCTCGGGCTATTC	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
ACGGAGGTCTGCTCTA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
AACGAACCCTAGCGGC	alt_4425_missing	16	43	20	18	33	12	46	17	47	17
AATTCAGTCGGTCTTA	alt_4425_missing	1	4	0	4	4	0	2	1	1	1
GCCGGCACACTATCTA	alt_4425_missing	0	2	3	0	2	2	0	1	3	1
ACTCCATTTGCGATTA	alt_4425_missing	7	35	7	9	23	7	32	6	31	8
CACTTATGCGATAAGC	alt_4425_missing	3	15	9	4	21	9	26	9	27	5
ACCTTCAACGTCACAG	alt_4425_missing	1	6	0	2	7	1	3	2	5	0
GGCTGGATGGTTAGGT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GTACGTTCCGTATTCA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GTATTGAACGATCAGT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
CCTCTCAGTCCTCGGC	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
ACGGATATGCGAGTTG	alt_4425_missing	1	8	5	1	3	0	7	2	7	3
CGTAGTCCTTCGAGTA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GCTTGCCTTATAGATA	alt_4425_missing	20	44	23	20	57	16	48	17	45	8
AAAAAACGGTCACACC	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GTGTTGCCCATATGAT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GGTATATCTATTAAGT	alt_4425_missing	35	97	36	59	78	33	83	26	86	33
GCCTCGCTAACTTAAC	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
CTTTCGACATGGCACC	alt_4425_missing	0	6	3	5	4	0	9	2	2	2
TTGCAGTTCTACATTT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
AATATGTCTTACGATC	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TACCCTTTTGGAGCAT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
TGCACGTTATAACTCC	alt_4425_missing	5	16	7	10	24	10	21	5	12	6
AAGTTGTGTTCGCACT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GCTGGTTTTTTCCTGG	alt_4425_missing	8	18	11	7	22	5	16	6	15	3
CAATTTTTGATTACGT	alt_4425_missing	1	2	3	1	10	4	8	0	5	8
CCGGTCTGTTATACGA	alt_4425_missing	0	1	1	0	3	1	4	0	6	1
TTTGCTTGGCTACGTT	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GCTTCCCTTTGTTATA	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
GGTTGATTGTCAACAT	alt_4425_missing	9	30	8	8	22	11	26	9	28	4
GCATTCGAGAGCCATG	alt_4425_missing	0	0	0	0	0	0	0	0	0	0
CACTCATGTAACGGAG	alt_4425_missing	0	4	5	2	4	4	3	4	5	4
CGTTTATCTCGGGAAT	alt_4425_missing	4	8	1	6	7	4	5	3	6	3
TGCTCCTCCCCCGATT	ref_3117_fdr	151	56	144	119	50	123	46	113	64	98
TAATGAGTCTTAGGCG	ref_3117_fdr	1	1	5	1	1	1	1	1	0	0
CCGTCTCGTGATTAAT	ref_3117_fdr	33	14	53	40	15	50	18	36	18	41
GCGGCGCCCGCGTTTC	ref_3117_fdr	70	22	111	74	20	79	22	57	28	79
GTCGCAGCATATTTAC	ref_3117_fdr	145	62	197	163	60	141	76	168	87	144
CGTGATTTCGATTGGC	ref_3117_fdr	96	42	92	93	40	88	52	78	32	85
CACATACCGTGTTCGA	ref_3117_fdr	268	95	331	277	120	262	113	229	134	239
GTTGCCCGGACCTCAT	ref_3117_fdr	157	42	146	145	59	131	46	104	49	110
ATACTGACTTTCAATC	ref_3117_fdr	328	125	444	368	143	314	126	311	118	307
TTAGCATATCGGTGTA	ref_3117_fdr	48	29	73	70	27	68	20	62	30	48
GTATTTCACGGCGTTT	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
AGTACCGTGTGGTTTT	ref_3117_fdr	26	10	34	42	12	41	20	30	13	23
AAGTCTTTTCCCGTTT	ref_3117_fdr	55	15	75	53	15	49	24	48	16	33
TTATAGAGCGCAATGG	ref_3117_fdr	29	7	36	20	8	24	11	30	7	30
TCGATCCCAGACTTCC	ref_3117_fdr	66	22	89	94	21	71	37	73	43	92
GGTCCCGTTGACGCAT	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
TGTAGACGACCTAACA	ref_3117_fdr	65	25	74	52	20	53	20	47	31	52
CGATCGGTTCATTTTT	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
ACTTCCAGGATCTTTG	ref_3117_fdr	30	10	21	18	5	25	8	22	12	22
CGGCCTTGGCATTTAA	ref_3117_fdr	308	106	329	363	127	302	142	305	168	266
GTATGCTGGGACTGCT	ref_3117_fdr	194	71	277	214	70	175	88	179	85	151
GATTGACCTAGCCCTT	ref_3117_fdr	122	29	130	115	50	108	41	90	55	87
GGGTACGGGTTTCGGA	ref_3117_fdr	9	1	4	5	3	3	2	6	3	6
GGGGGTCATTCTGTGC	ref_3117_fdr	2	10	5	12	12	0	1	7	10	4
ACTGTTTTTTTCTATT	ref_3117_fdr	134	33	173	127	40	147	45	139	42	97
TTCCTCTACGTATCGG	ref_3117_fdr	18	11	22	15	9	23	7	17	6	13
GCAGGTCGCTGCTATG	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
GTTATAGCGGCCGAGA	ref_3117_fdr	24	7	31	27	13	22	12	24	11	22
CAATATAGGCAATTTG	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
CCTTCGATATGCGAGC	ref_3117_fdr	133	47	153	151	41	113	38	110	63	129
AGAGCGTAGGGAATAT	ref_3117_fdr	56	15	59	38	11	50	20	56	20	45
TTGTTCTTGCAGTCTG	ref_3117_fdr	75	27	73	70	29	81	40	52	41	63
CTCCGCCTGAACAGCA	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
GGATTTTCAAGGGCCA	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
TGTCAACCTTTGGGTT	ref_3117_fdr	168	54	199	188	60	124	63	151	75	145
CCGGGAGTTCATTATA	ref_3117_fdr	31	31	27	30	38	15	38	20	35	23
CCTCACGGCCCGGACC	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
CGCGCAGCCTTTGGGC	ref_3117_fdr	61	36	73	57	41	46	37	52	68	52
TCTGGTTAGTGGTTAG	ref_3117_fdr	135	61	184	165	65	111	62	129	62	115
CTTGATATTAGTCTGT	ref_3117_fdr	6	0	5	12	1	9	5	5	4	8
CCTTGCGCAAACGGTG	ref_3117_fdr	44	19	60	45	14	36	16	40	23	34
GGGTCTCACCGTTTAC	ref_3117_fdr	201	76	269	233	61	194	71	205	73	176
GAGTCGGGGGATCTTT	ref_3117_fdr	547	160	704	544	196	539	212	551	194	448
CTTGCCCGGTCGGTCC	ref_3117_fdr	9	8	9	12	3	6	7	11	3	11
CCCATTTAGCACCTAA	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
TAGTCGCGGCAGGTAC	ref_3117_fdr	42	14	55	39	12	44	15	40	14	39
ACCGTGTCGCTTTTCA	ref_3117_fdr	10	3	13	20	6	6	6	9	2	9
ACCTGCGGTTTTAGGT	ref_3117_fdr	28	14	33	33	12	19	14	30	11	19
TTAACGCATTTTTTAC	ref_3117_fdr	47	14	65	64	17	51	24	40	24	34
AAGGAGTAACACACTG	ref_3117_fdr	87	29	96	92	29	96	24	68	31	59
ATGGAAGTGGGTTTTA	ref_3117_fdr	0	0	0	0	0	0	0	0	0	0
GCTACAGTTTAAGTTG	ref_3117_fdr	52	18	70	60	21	43	38	50	25	52
TATATCTTCAAATCGA	ref_4645_reverse	14	13	14	11	7	9	11	17	10	8
GATCTTTAGTTTTCGA	ref_4645_reverse	41	67	53	48	54	33	54	32	52	30
GATATCCGAGACCGTA	ref_4645_reverse	18	30	23	27	22	18	30	16	30	11
CTACAAGTTGATTAAT	ref_4645_reverse	55	72	70	66	70	62	90	45	81	48
ACGAATGTTTATCTTG	ref_4645_reverse	48	38	58	44	58	39	35	44	49	41
CTTTTCATCGTGCCCA	ref_4645_reverse	5	9	1	2	9	11	10	9	6	5
TCGTCGGTGACCTGAG	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
GCTATATCCCGGCCTT	ref_4645_reverse	0	0	1	0	2	0	2	0	0	0
GTTGTCTATCCTGTAC	ref_4645_reverse	33	45	42	50	71	31	67	36	56	40
CATCCAGCGTAGAATA	ref_4645_reverse	17	42	48	22	27	26	30	26	37	22
TCTTGCGTATGCTGGT	ref_4645_reverse	95	156	115	120	178	116	167	91	203	93
TTTACCCCCTCAAGGG	ref_4645_reverse	39	45	34	21	33	30	50	22	47	28
TTCACGTTATAATTCG	ref_4645_reverse	7	15	18	20	13	14	10	15	17	14
TTCTCTAATATGTGGT	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTCAACAGTCCTA	ref_4645_reverse	22	22	20	17	25	5	18	13	13	14
CACCATGTTTGCTCGC	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
CTGTTGTATGTTCCCC	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
TCGTTGGCACATCCCC	ref_4645_reverse	23	51	25	22	66	20	72	21	56	19
ATATTGGTTTATTGAC	ref_4645_reverse	45	55	42	42	61	44	63	40	80	43
TGATATTCGGACCATT	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
GTGTACTACATAGACT	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
ATTCCGCCAGGGGCCT	ref_4645_reverse	37	40	43	38	29	30	47	38	32	35
TCGAACGGAGGACGAG	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
ATTGGGGTCCTTATCG	ref_4645_reverse	78	95	96	93	111	58	121	56	118	58
TTAAAATACTGTAGTT	ref_4645_reverse	45	47	53	69	47	56	62	61	63	35
GTTATCATTGCTTTGC	ref_4645_reverse	14	21	17	19	18	22	24	8	20	12
GGCGGCCTTTACACCA	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
CCACGCCATTACACAC	ref_4645_reverse	30	32	26	25	10	28	28	17	33	20
TCAGTTTTCTCTCCAT	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGAGGCTGCTGTC	ref_4645_reverse	90	125	100	107	134	83	142	94	122	89
CCTTTTGTCCGTTTAT	ref_4645_reverse	13	16	20	17	34	13	18	12	14	15
ACTTGGTACACCTTGA	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
TATCCCGATCGTACCG	ref_4645_reverse	28	41	33	44	55	32	48	26	67	31
CACGGGGCAAGACGCG	ref_4645_reverse	3	8	6	3	6	4	3	7	6	3
GCATCTCAGTTAAGTC	ref_4645_reverse	14	13	11	13	9	9	17	17	17	22
TAAGCGCGTGGTCACG	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
TCTAGAAAGTCTGCAT	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
ATCCTGTTCTTATAAA	ref_4645_reverse	11	4	12	12	20	11	13	10	14	7
ATACGGGGTACGCAAT	ref_4645_reverse	34	32	38	31	32	27	37	23	41	20
GATGGTTAAATCCAGG	ref_4645_reverse	33	45	48	31	48	34	38	35	33	40
TGCCCAATTTCTACGA	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCGGACTTGGTAC	ref_4645_reverse	69	105	82	78	136	69	95	69	127	58
TGCGTCGACTTCGCCA	ref_4645_reverse	10	9	16	4	17	5	11	5	11	7
TACCCTCCTGAGGATT	ref_4645_reverse	13	13	15	11	11	14	23	8	16	6
GTGTTGGAACGTGCCT	ref_4645_reverse	30	26	47	22	32	32	37	37	27	23
GTATTCGTGTCTTTTA	ref_4645_reverse	11	10	12	2	7	6	8	9	13	8
GTGGTCTCGCTGCTCC	ref_4645_reverse	7	8	10	13	13	9	13	13	19	12
GGGCCCCTATAATAAC	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
GGCCACGCCATGAGAT	ref_4645_reverse	69	69	87	52	73	68	95	65	94	59
GGTTCGCGCCTTCGTG	ref_4645_reverse	7	27	14	13	21	13	14	12	28	10
GCTCTAGACCAGTTAC	ref_4645_reverse	0	0	0	0	0	0	0	0	0	0
TACGTGTCAAGAATGT	ref_4645_reverse	18	37	34	23	28	22	27	25	29	20
GTCTAGGCTTTTTCGC	ref_4645_reverse	77	87	77	89	98	78	117	64	104	59
AGTGAGGGACCCCCGC	ref_4645_reverse	81	114	70	79	106	79	86	77	106	56
ATTATTCTTGTTGGAG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TCACTGCTCTACATTG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TCCCGTCATGCGATTC	alt_4913_missing	3	6	1	1	11	2	11	0	5	2
AACCGCATTCGGCAAA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TACGCTTACTGGCGCG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TCTCGTGCGGCCAAGG	alt_4913_missing	7	13	9	6	5	2	8	3	13	3
CACTACATTGATCCTT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TGTGCATGTCAAGTCC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TGTTAGGCGCATCTAA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
AGTCTTTCACCGTTAT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
ACCCGGCTTTGAATGA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GTCGTTGCACTCCTTT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CTTTCCAATCATGTCG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CTACAATCGCTGGAAG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CTACTATAATTCAGGA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GAAGCCAGATAGCCCG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
AGGGATGTCCTCAGCA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
AACATCGAGTTGAGAA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CTTACGTCATGCGCGC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GTGGTAATCTTCAGGG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GCACGGGGGCCCATCG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CCGCATAGAGGGGACT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CACGGCTGCCCCCGGA	alt_4913_missing	4	6	11	5	13	3	10	5	12	3
TTTGTATGGAGTAGGT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GACCATCGCTGTGGTT	alt_4913_missing	23	45	20	18	32	25	30	10	46	18
TCCGGGGGCGTCCGTG	alt_4913_missing	4	17	4	4	12	5	11	3	11	1
GTCTGCCCTAGCTTCT	alt_4913_missing	8	17	6	7	12	13	21	7	19	4
TAATAACGGCCAGAAT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CATGCGTCTACGTGAC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CCTTCCTTACTCTCGA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GTCACTTAGCTCATAT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
ATGCGTCTTACCTTGC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CTAGGATTCGGTGCCA	alt_4913_missing	6	7	3	3	8	2	9	2	5	2
ATCTACCCAACAAGCG	alt_4913_missing	8	11	3	8	19	11	8	3	10	8
GCCTACTGAATCGGTT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TTTCACGTCTCCTACC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
AGTCTCATTTACCCGA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
AATCGAGTTAGTAAGG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TACGTTGGCTTACGAT	alt_4913_missing	6	9	6	9	16	7	23	5	13	2
TTGTATTAGCAATGTA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
ACGGTGTACTTCCTTT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TCGCCGGCTTATCTCC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TCTACGGTGTTTTGTC	alt_4913_missing	4	16	7	5	16	8	14	12	21	9
CGTTTAAAGCCGAGTC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CGCCCGAATGATGTGA	alt_4913_missing	4	10	8	4	6	3	16	15	15	3
GATCGCGTGCACGCTC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
AGGAACTCCGGGATAA	alt_4913_missing	4	6	6	4	2	5	7	3	6	4
AATTGTAATTTACTTC	alt_4913_missing	5	5	4	8	8	4	8	1	5	9
AGCCGTGGTTCTTCAT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CACTGATGGTACTGCA	alt_4913_missing	7	1	6	6	4	3	9	3	8	7
TTGACTTTTTAATTAC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TGCCCTCGGTAGAGCG	alt_4913_missing	20	16	18	14	35	11	29	13	26	18
TCGGGTTGCTTTAGAG	alt_4913_missing	16	33	17	13	37	18	23	20	31	19
CAGCCACCCCATGTAT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
ACGGGTCAAGATGGTC	alt_4913_missing	86	102	93	68	117	82	120	87	123	91
ATGTGTTATGGAGCTC	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TTGAACGCAAGCGCAC	alt_4913_missing	1	5	0	3	2	1	4	3	4	7
CCTAAGGGTTTCAGCT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GCATGCCCTGTATAGA	alt_4913_missing	11	17	12	10	30	11	18	11	25	13
GTAGGTTTGGAAGCAA	alt_4913_missing	13	20	23	23	22	13	22	7	25	8
TTCGATCTGTTCTCGG	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
CCCGCGCAGATCATCA	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
ACTTTTCTTACTGTCT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
TGGAGTCCGTAGGGAT	alt_4913_missing	0	0	0	0	0	0	0	0	0	0
GCACCTTATTACCTCA	alt_1883_missing	17	29	19	8	40	4	32	13	36	9
CTCGATGGAGGTCGCA	alt_1883_missing	16	22	20	13	24	19	24	9	22	10
CTCTTTTTATCCTAAA	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
CACCTTAACCCTCTCT	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
TGATTTACCAGGAATT	alt_1883_missing	40	80	34	40	68	28	84	31	86	35
GGCTCCCTTCAGGTAT	alt_1883_missing	46	58	46	37	69	31	74	33	73	36
CCGTGGCTTTCTCAAC	alt_1883_missing	2	33	7	5	28	0	45	4	25	0
CTGAGGATGGAACATG	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
CCACGTCGGGCTTATC	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
TGTCACCTATCAAACC	alt_1883_missing	83	143	75	52	167	50	140	64	159	48
GCTAGGGGTTTGGTCG	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
TCACGGTTTGAAGTTT	alt_1883_missing	11	10	17	10	18	14	18	12	15	6
CCAACCTCCTGTTAAG	alt_1883_missing	1	53	6	4	62	9	67	4	74	4
CGACGTGTATCCCTAT	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
TAATAGACTGGTCGCC	alt_1883_missing	2	4	5	1	10	1	14	2	5	1
GTCGCGAGGACGTTCT	alt_1883_missing	19	51	27	27	35	26	32	23	28	23
ACTCCTAGTGCGTTAA	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
ATCCAACTCGTCATTG	alt_1883_missing	33	94	33	41	72	20	89	30	85	34
ACGGCGCTTCCATAAG	alt_1883_missing	35	36	22	24	40	20	36	24	23	22
GGTTAAAGGATACTCA	alt_1883_missing	57	119	56	55	111	56	116	43	119	53
CTTAAAGATGCGGCCA	alt_1883_missing	9	18	20	19	29	8	19	12	27	9
GATTACCTTCGTTCGT	alt_1883_missing	22	69	19	18	42	16	51	22	58	22
ATGGACTACGGTTGCA	alt_1883_missing	41	92	54	27	79	42	96	36	77	34
ACTGCCAACTTACGGG	alt_1883_missing	1	0	2	1	1	2	3	0	2	0
GTGCCTGAGAGTCCTT	alt_1883_missing	51	99	60	41	69	42	78	35	82	20
TCTAGTTAAGGGTTCT	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
ACGTTACGCTGTTCAT	alt_1883_missing	37	50	39	29	56	32	53	29	56	32
TTCGTCCCTTTTTTGC	alt_1883_missing	24	30	34	24	27	26	38	25	30	21
CATTTGCGTTCAATTT	alt_1883_missing	4	8	4	7	8	1	5	1	10	9
AGGCCTGTGTCTTTAG	alt_1883_missing	0	0	0	0	0	0	0	0	0	0
TAAGACCAATGCGAAG	alt_1883_missing	50	75	50	52	80	46	96	50	82	30
TTGTAGAGTGGATAGT	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TCCAACCCGTGTAGGA	alt_5842_new	17	15	7	15	20	14	10	6	32	13
GGCCCCAGGTTATACG	alt_5842_new	0	0	3	1	2	0	0	1	1	0
TTGTCCCTTTGCCTCT	alt_5842_new	0	0	0	0	0	0	0	0	0	0
GTCCTCTTCTGGAATA	alt_5842_new	20	22	29	14	33	15	36	16	34	12
GTTTAAATCGGATCCC	alt_5842_new	41	58	61	49	72	42	66	51	65	55
GGTAACATGCTAGTCG	alt_5842_new	31	38	32	29	49	33	45	27	40	27
GTACAACCTTTGCTGG	alt_5842_new	16	28	35	20	34	20	25	31	37	19
TAGATCGTAAGATAAC	alt_5842_new	0	0	0	0	0	0	0	0	0	0
AAATTCTTTTCGACTG	alt_5842_new	13	23	13	17	15	14	26	13	26	15
CTAAAACGCAATGACC	alt_5842_new	10	21	27	13	12	10	23	15	18	18
CACCGAGTACAACTGC	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TACTCATATTAGACTC	alt_5842_new	5	10	7	8	13	10	9	4	12	7
TATCTTCCACATCTCT	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TGTAGCACCTGCAAGG	alt_5842_new	0	0	0	0	0	0	0	0	0	0
ATCGACTTACATGAGT	alt_5842_new	3	6	6	0	5	1	2	5	5	5
TGGTTGGATGGTACGG	alt_5842_new	10	18	10	9	22	10	17	9	9	6
GCCCAATTGGTTTGGA	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TTGCCCCTCGTCCGTG	alt_5842_new	0	0	0	0	0	0	0	0	0	0
AGCGTTCCTATTGTGA	alt_5842_new	1	6	2	1	4	2	3	7	7	0
AGTATGCCTGCTCTTG	alt_5842_new	0	0	0	0	0	0	0	0	0	0
AAGAGTTGCTCCGCGC	alt_5842_new	0	0	0	0	0	0	0	0	0	0
CACCTTGACGGGTTAT	alt_5842_new	0	0	0	0	0	0	0	0	0	0
CCACGGCAGCAGTTTA	alt_5842_new	0	0	0	0	0	0	0	0	0	0
CCGGGCGGTACAAGTT	alt_5842_new	16	6	15	9	9	12	12	10	20	14
AATGCACGGTTCAATG	alt_5842_new	0	0	0	0	0	0	0	0	0	0
CTCTTTCTTTTACATC	alt_5842_new	0	0	0	0	0	0	0	0	0	0
CGCCATTGTATATTTT	alt_5842_new	10	19	8	20	24	11	21	16	14	6
ATCGCTTAATGGCGCC	alt_5842_new	40	45	54	55	40	43	47	44	43	35
AGTCTGTAAACCTGCA	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TTATTTTGTCGACAGC	alt_5842_new	55	47	46	38	51	41	65	38	40	31
GGGTTTAATGAAACAA	alt_5842_new	2	4	2	4	5	3	6	3	5	4
TAGCAGTTTCACCACG	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TACACCATTCACATGT	ref_5842_new	0	0	0	0	0	0	0	0	0	0
TCTTTGTCTCTAGGGG	alt_5842_new	18	18	7	5	12	7	19	13	13	10
AACTTGTCCTCTTGCC	alt_5842_new	0	0	0	0	0	0	0	0	0	0
ATATGTCCCATTTGCC	alt_5842_new	126	154	143	140	142	116	180	98	175	109
AAATACCGGAACTGGC	alt_5842_new	0	0	0	0	0	0	0	0	0	0
CTGCGGGACCCGGTCT	alt_5842_new	16	20	17	14	19	11	17	22	30	18
TTATCTATTTTCCACA	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TGACCGCTTCCCGCGG	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TCCTGCTTGGCTGAGC	alt_5842_new	0	0	0	0	0	0	0	0	0	0
TCTTGAAATTCCTTTG	alt_98_missing	1	1	1	6	5	1	2	1	2	3
AAGCTAGGAAACATTG	alt_98_missing	2	3	3	5	6	1	4	3	8	2
GATTTAAACCTGGTGT	alt_98_missing	21	38	17	15	18	17	37	17	46	13
CTAGAGTTGCGGTTCT	alt_98_missing	23	54	33	31	53	17	56	31	44	25
AGAGCCGGCCCACCTT	alt_98_missing	10	52	24	27	38	23	45	22	47	15
TATCCAAACAGGATGA	alt_98_missing	11	16	12	7	9	9	12	9	21	3
GTATTCCAGATCCCTT	alt_98_missing	0	0	0	0	0	0	0	0	0	0
TCTTCTTTTTGTAACT	alt_98_missing	0	0	0	0	0	0	0	0	0	0
GTCCGCTCACTCAATA	alt_98_missing	0	0	0	0	0	0	0	0	0	0
AGACTACATGTTAATA	alt_98_missing	29	27	21	25	39	20	51	27	40	18
TTCCGGGTAATCTTGC	alt_98_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTTGTCACGTAT	ref_98_missing	49	56	57	31	74	35	64	33	78	33
CGTACCATGATGATAT	alt_98_missing	5	18	10	5	12	4	15	10	21	8
CTCTTCTCGATGCCAA	alt_98_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTGGAGCAGGAC	alt_98_missing	51	96	51	66	74	49	94	52	96	40
TTGAGGTAACATTTCC	alt_98_missing	0	0	0	0	0	0	0	0	0	0
GTCTGATTTGGTCATT	alt_98_missing	10	9	9	5	10	7	22	6	7	6
GCTTTTACAGTGTTTA	alt_98_missing	5	13	4	5	9	7	6	3	11	3
GAAGATCACGTCGTCG	alt_98_missing	21	52	25	26	38	22	29	35	46	19
TAATTCCATTTTTTCG	alt_98_missing	0	0	0	0	0	0	0	0	0	0
TCATTTGTCCTTTTGT	alt_98_missing	0	0	0	0	0	0	0	0	0	0
AACACTAATATCATGC	alt_98_missing	0	0	0	0	0	0	0	0	0	0
GGTGCGCTTCCTTTAC	alt_98_missing	26	41	22	14	39	21	25	12	45	24
TGGGGCAGCTCAATAT	alt_98_missing	8	19	16	17	25	12	21	10	23	6
CAACCGAGCCGTCTAC	alt_98_missing	3	9	7	5	7	6	13	2	15	3
ACAGGATTATTTCAAC	alt_98_missing	14	10	12	10	21	8	16	4	21	5
CTGTGACTACCCTACG	ref_3540_missing	12	26	18	8	29	8	37	13	44	9
GATGCGGAAAGTGTGG	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
GGCTGTTAGTCCAATT	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
CTTTCGATCGTCTAGA	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
TTACGTACACAGCCAG	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
CCCGTCTTCATCCATT	ref_3540_missing	19	22	18	7	21	12	21	11	22	10
ATGATAGCTGTTCATA	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
CGCGGAGACAACTGCG	ref_3540_missing	9	16	6	9	6	6	15	5	15	10
TCTATTTCTACGAGCC	ref_3540_missing	7	9	9	3	13	5	12	4	17	7
TTCGGATTCTGCTTCC	ref_3540_missing	7	19	14	7	26	8	24	10	27	7
ACGTGAGCTTATTCCT	ref_3540_missing	5	18	14	7	22	13	14	9	23	8
CTCGAAGGCCAGTTAA	ref_3540_missing	4	7	6	2	3	7	8	1	6	4
GGGTGCCCAACTCGCC	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
TGAACGTCTTTTACCC	ref_3540_missing	19	46	15	13	49	7	36	16	31	8
GTATGTTATTTATTCT	ref_3540_missing	7	19	7	4	12	4	9	6	22	5
AATTGGAATTGCCTCG	ref_3540_missing	21	40	30	20	40	15	43	21	56	17
AGTGAAATTTCCACGT	ref_3540_missing	14	32	19	19	37	12	32	23	40	21
GCAAAGGTAATTCCCA	ref_3540_missing	8	12	6	6	8	11	18	5	13	6
TCCATTTTCGAAAGCC	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
TGCGCTACTATTCCCT	ref_3540_missing	4	18	12	4	13	1	21	7	17	8
AAAATTCTCCGCATGT	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
TTCCGATTTGCATTTG	ref_3540_missing	22	30	13	15	29	11	28	19	31	13
TATGGCACCTCAACCA	ref_3540_missing	5	15	14	6	23	13	24	11	23	6
GTTACGCGGGCGTCTG	ref_3540_missing	2	7	2	5	7	1	2	5	2	4
TATTTTTGTCCCCACT	ref_3540_missing	10	23	17	15	15	11	24	11	25	12
ACGTGCCAGAATATCC	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCCTTAAGCTCC	ref_3540_missing	3	6	7	7	14	5	12	4	12	3
TCCCTGAAAAACTTTA	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
TTATAAATGTACTGGA	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
GTTCAAGCGCTAGTTT	ref_3540_missing	22	38	19	12	42	12	34	11	27	15
TCCACACGTTGGTTGG	ref_3540_missing	16	35	13	11	41	14	37	8	28	13
TGCGTCCTATGGATCC	ref_3540_missing	20	28	19	10	21	8	40	9	37	8
TCCATTTCGGTGGCCT	ref_3540_missing	36	100	64	51	109	46	110	55	139	33
GTGTTGTTTGGCAGTT	ref_3540_missing	10	30	15	8	24	9	30	11	26	12
GGTTCGGGTAAACCTT	ref_3540_missing	18	25	15	14	29	6	19	8	23	6
AAGCGGTCACCATCTC	ref_3540_missing	23	50	26	29	54	17	56	25	51	22
GTGGTCGAATTATGCC	ref_3540_missing	3	9	0	0	4	0	12	0	13	0
GCCATGGAGTCTCTAC	ref_3540_missing	30	84	26	36	54	40	76	24	74	31
CAAGTTCGTACACGCT	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
GATTTAAGATTTTGCC	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
GCATCGGATCCCCGTT	ref_3540_missing	19	77	29	29	56	26	68	18	91	15
AAACGGTTTCTCGCCG	ref_3540_missing	14	38	13	11	28	25	47	10	37	25
AGTTACGACGCTCGCG	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
GCGACCATCGCCTCGT	ref_3540_missing	92	159	118	94	167	64	165	77	190	75
GAAGCATCATCACATC	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
TTTCACTTATACGTTC	ref_3540_missing	10	27	12	12	35	12	29	13	36	9
TCCGGTGCCCTAGGAC	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
GTACTATATAGGGATT	ref_3540_missing	6	27	8	2	13	6	17	7	17	7
GTGTGAACCGCGGTGG	ref_3540_missing	0	0	0	0	0	0	0	0	0	0
AGAATCTGGGGAGGAT	ref_3540_missing	14	24	13	10	39	14	29	16	35	16
CATCTACATAAGGTTT	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
CCTGCATGCTGCTCTG	ref_5385_missing	12	13	8	14	11	10	12	13	11	5
ACTCACCGGTGGGTCT	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
CGCGTCATGAAAGCAT	ref_5385_missing	21	22	41	36	27	32	28	23	31	25
ACTGAGAGTAAGTAAG	ref_5385_missing	36	47	36	42	40	51	44	31	43	39
CTCGTTGCGCTTAGTC	ref_5385_missing	40	43	43	50	36	41	44	49	44	43
ACGTTTTATTTCTTTC	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
TTCGCTGAATTAAGTT	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTGATTTATTTT	ref_5385_missing	30	16	35	17	17	15	23	21	30	21
ACGTCCCGACGTTATA	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
TCGGACTTCGAGCATA	ref_5385_missing	22	16	26	20	21	18	21	12	39	32
GAGCTCGAGCTTTGGT	ref_5385_missing	57	52	68	54	45	48	55	44	53	53
GATTCCACGTTTTGCC	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
AGTATGCACTGTCGAG	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
AAAACTTGGCCGTGGC	ref_5385_missing	37	31	51	41	38	39	37	29	43	28
ACAGTTCCTCCACTTT	ref_5385_missing	30	41	31	45	40	33	35	35	39	34
GGTGTCGTCGCGCATA	ref_5385_missing	16	16	28	25	22	14	18	8	16	14
ATCCGGGGCGCCAGGC	ref_5385_missing	35	33	32	33	39	36	51	23	35	32
TATGGTTTTCTCTGTA	ref_5385_missing	38	56	54	36	27	38	52	31	78	29
CGGGTGAATTAGATTA	ref_5385_missing	318	325	395	323	323	276	293	342	337	261
TTAGGTTCGCCAAGGC	ref_5385_missing	23	29	47	21	25	30	39	17	28	26
CTATGAATTAAGCTAT	ref_5385_missing	10	16	12	18	15	12	18	18	17	16
CATGGTCTAATTACCG	ref_5385_missing	43	27	44	38	36	35	37	24	38	27
AGCGTGCGTAATAGCC	ref_5385_missing	11	12	20	9	9	12	17	11	27	12
GCTCTGCTGTAAACCT	ref_5385_missing	45	65	69	46	55	51	52	45	63	38
TTCCGCTTTGTACGCT	ref_5385_missing	15	19	14	17	15	10	16	9	11	21
TACCTAGATTCTCCAT	ref_5385_missing	6	16	10	16	12	15	15	11	12	9
ACTGACCATGTGTTGA	ref_5385_missing	0	0	0	0	0	0	0	0	0	0
CATATCGTTTCTTAGA	ref_5385_missing	50	72	85	66	51	59	77	60	62	55
CGGTGATTGTGTTTCT	ref_3336_missing	48	78	53	71	70	55	100	54	104	40
TCTTATGGCCAGTGTT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
TTCTAAAGTTGAACGT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
TGGTTAATCTGGAAAC	ref_3336_missing	11	15	5	9	11	6	12	7	18	3
CGCCAGTTGGCTGGTT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
TGGCTGCTGGGTCTGT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
TCCTCTTGCTCCGATA	ref_3336_missing	15	17	15	17	26	11	17	15	37	14
AAGAGAAGAACGAGGG	ref_3336_missing	22	59	40	20	39	25	48	23	44	22
GTTCCACGGGCTCCCG	ref_3336_missing	16	28	26	16	19	15	20	10	24	17
TTGGATTCCTCGGTTC	ref_3336_missing	16	12	10	11	11	12	20	16	13	10
AGTCTGAGCCCATTTC	ref_3336_missing	11	21	22	20	35	12	19	6	25	16
CAGTAGTGTGCTCTCG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
AGCTGACCCCGCCTCC	ref_3336_missing	15	31	9	11	41	13	29	22	21	19
CTGTACCATTCGACAT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
CTCGTAAAGGACCTGT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GTGATATTCCACGACA	ref_3336_missing	12	17	14	9	15	18	26	10	26	8
AAAATCGTCACAATAC	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
TTCCTCGTGAGACACC	ref_3336_missing	4	2	6	3	11	8	6	1	10	2
GACGGTCGGCATGGAC	ref_3336_missing	20	25	13	14	29	12	26	14	28	19
CGTCTACCCCGCGGAG	ref_3336_missing	0	21	4	2	24	2	17	4	21	2
TGCTGTGCCTTTTTAT	ref_3336_missing	29	30	37	23	31	23	39	20	36	23
CAATACGACCATAGAA	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
ACGGCGGTGCAGTAAG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GGTCCGAGCAGCAAAT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
TTGCATAGTCGGCATT	ref_3336_missing	7	3	3	1	2	7	3	9	8	4
ACAGCAGTTTCGTGCT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
AGGACCCAGTATAAAC	ref_3336_missing	14	30	33	25	26	14	20	13	28	19
CTTGGATAGGTACCTG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
CTCGGCTACTTGGATA	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
ACTGCTCTGTTGTTCG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GATCCTCCGGATATTT	ref_3336_missing	7	14	7	6	9	4	15	5	26	5
TCATCATCCTTCGTTT	ref_3336_missing	2	4	6	2	6	11	8	6	6	2
GTCGCTTGCCCTGTGC	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
AGCTTGACGCGACACT	ref_3336_missing	1	3	2	5	3	1	1	3	0	3
CTAACTCATGTGTTGT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GCATCCTGAATCTACA	ref_3336_missing	17	34	21	10	21	9	21	16	32	10
TATGGGACAGTCGTTG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
ACGCGTCTGTTGCATA	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GGTTGAGCCCATTGGG	ref_3336_missing	40	47	48	33	67	28	52	34	66	24
TGTAATTCGCACAACG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
CTTTTAGACTCAGCTA	ref_3336_missing	5	13	8	16	12	11	10	7	17	6
GTGGTTAGGGGGATTC	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GCCCATCTTGCATTAG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
CCTGGGTGATTGCTTC	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
CAGATCCCACGGTCTC	ref_3336_missing	46	46	41	31	59	30	72	34	59	36
ATCCGTGCACTTTTCT	ref_3336_missing	20	23	20	13	25	9	19	15	35	22
GCTTCATGGACGAAAC	ref_3336_missing	9	5	10	9	10	5	15	10	14	7
TCTGCAATGAAAGGAC	ref_3336_missing	4	15	11	4	10	7	19	10	3	5
GATTTTCCGCATCTTT	ref_3336_missing	11	4	15	12	15	7	13	10	15	8
GCGGACATGTGTCTGT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GCGCCTTCGCTCGACA	ref_3336_missing	30	30	34	26	37	29	36	13	38	25
ACGGCCTTTGGCCCGG	ref_3336_missing	1	3	3	2	4	6	10	1	12	5
TTCACTGTTTGTTTTT	ref_3336_missing	4	16	14	7	10	7	1	2	3	7
GGGGCATTTGTTGTCT	ref_3336_missing	17	56	27	9	47	30	33	25	41	27
TGCTACAGATTCCTAA	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GCATAACGTTAGACTG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
AACAATCATATAAACG	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
TTCCATGGCGTCATTC	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GTCTAGAACAGTGACA	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
GCTTGAGCCCAAAGAT	ref_3336_missing	0	0	0	0	0	0	0	0	0	0
ACGGTTGAGCCAAAAG	ref_3336_missing	9	3	4	4	8	5	7	3	2	3
CGGCAGCGACTTCCAA	ref_3336_missing	11	17	10	22	13	15	20	8	12	14
TCCGCAAAGTATGAAC	ref_3336_missing	15	16	12	9	6	11	15	8	11	10
ATGTGCCCCGGCTTTT	ref_5917_new	128	156	190	162	145	155	161	145	165	140
TGACTAAATAATCATC	ref_5917_new	9	8	9	9	12	12	11	10	8	7
TGTTTTTAGCCTTGGG	ref_5917_new	46	42	53	48	37	57	37	34	45	44
ATTCCCACTCGGCTGG	ref_5917_new	58	37	50	41	40	50	55	46	44	49
GAGCTAAATACTAATG	ref_5917_new	21	15	13	15	15	18	22	13	12	15
GCGTTAGAGTCAAGAC	ref_5917_new	11	12	18	11	8	6	11	8	7	11
TATCAGTCTGTGGCTC	ref_5917_new	139	102	133	108	119	112	129	104	139	102
TAGGGTGTAAGCAAGC	ref_5917_new	13	16	15	10	21	12	12	9	9	12
TTACATTATGGGTCGT	ref_5917_new	0	0	0	0	0	0	0	0	0	0
GTCCGTAAGTATAATG	ref_5917_new	39	32	59	42	33	43	50	52	45	35
GATCCGAAACCTTCCC	ref_5917_new	0	0	0	0	0	0	0	0	0	0
TAACGTTGGTAACATA	ref_5917_new	16	10	11	13	17	12	9	9	22	8
TGCCATAAGATCCCGC	ref_5917_new	30	37	41	29	20	31	29	23	31	25
GCGGTCCTTTTACCCT	ref_5917_new	0	0	0	0	0	0	0	0	0	0
AGGGCGTGTAACGGCG	ref_5917_new	126	130	146	103	105	127	127	95	132	106
GTCCTTCCGTGTCCAC	ref_5917_new	17	15	15	8	7	15	15	15	16	13
GAGCCAGTCTTCAACC	ref_5917_new	44	34	49	37	44	35	40	30	57	37
GTTTCCACCCGTTTGC	ref_5917_new	0	0	0	0	0	0	0	0	0	0
TTTTAATATTTCTTGT	ref_5917_new	97	54	73	65	52	77	78	68	57	76
TCGACAAGGCTCAGCT	ref_5917_new	41	55	33	26	43	40	50	34	41	37
GCCGGACCACTTTAAG	ref_5917_new	0	0	0	0	0	0	0	0	0	0
CATCTTGACCTTTTCT	ref_5917_new	0	0	0	0	0	0	0	0	0	0
CCTCCGCTCCCGAGTC	ref_5917_new	13	12	11	11	21	13	11	11	6	7
CGTTACCGACTCGCCA	ref_5917_new	84	79	100	83	57	64	65	85	98	87
TAGACACCGTGTTATC	ref_5917_new	67	61	69	61	77	71	56	55	58	56
TTTAACATACCTGGAG	ref_5917_new	38	71	63	57	88	46	93	40	97	46
GGTACTTGAATAAAAA	ref_5917_new	2	4	1	2	2	3	3	5	5	1
ACTGTTGCAATTTGTA	ref_5917_new	2	1	3	1	3	2	3	1	2	2
TATGGGTGGAGTGGGA	ref_5917_new	7	1	8	3	7	6	15	5	6	4
GTTTGTTCGGGGATGC	ref_5917_new	119	93	154	105	83	87	86	106	86	100
ATAAACTCGTGCTATG	ref_5917_new	0	0	0	0	0	0	0	0	0	0
TCTTTTTAATTTATTT	ref_5917_new	10	8	7	8	12	7	12	8	10	1
GACCGCACCAACAAGC	ref_5917_new	5	4	12	9	5	4	8	3	6	12
ACCCGGTAATTAGTAC	ref_5917_new	0	0	0	0	0	0	0	0	0	0
CGGGCCATATTCAGTC	ref_5917_new	0	0	0	0	0	0	0	0	0	0
GCGTCCCATCCGGTGC	ref_5917_new	46	42	81	58	68	41	52	54	66	44
GATGTACTACTCAATC	ref_5917_new	31	33	23	17	19	29	27	14	24	20
TAAATTCCTACACTTT	ref_5917_new	15	13	27	10	16	17	18	18	15	7
GCATGGCCTGATTCCC	ref_5917_new	17	28	21	21	23	17	17	24	19	18
CCTCCTCATCGCCTTG	ref_5917_new	0	0	0	0	0	0	0	0	0	0
AGTGAGCTTTCCTTGG	ref_5917_new	162	157	139	133	179	156	199	146	169	134
ACCTCTGGCGTGTGTA	ref_5917_new	0	0	0	0	0	0	0	0	0	0
GGGTTTCAATTGCTAT	ref_5917_new	93	106	137	89	89	89	108	103	98	91
AGTGTGTCTACGAGAG	ref_5917_new	83	67	93	67	67	89	89	86	99	80
TAATTTCGCCAGTATA	ref_5917_new	93	111	144	113	114	118	120	109	115	113
TGTTCATTATCCGCTC	ref_5917_new	63	47	52	52	60	52	43	63	45	45
GCTCAGGGCTCGTTCG	ref_5917_new	54	41	42	48	43	37	34	32	42	43
CCGCAGTGCTTATCCT	ref_5917_new	2	4	9	1	4	9	5	5	7	8
CTGCACCAGAACGCGA	ref_5917_new	45	49	65	65	73	64	65	48	58	59
TACCTTTTCCCGGTAA	ref_5917_new	25	51	24	15	39	18	40	12	54	18
GTGGGCATGTGCGCTT	ref_5917_new	0	0	0	0	0	0	0	0	0	0
GTCTCGTAGCGGTGGA	ref_5917_new	28	35	38	31	28	33	33	30	36	31
TTATAATCGAAACTCA	ref_5917_new	24	72	27	22	76	28	83	19	76	14
ACTTTCACTACAGGTA	ref_5917_new	20	11	13	15	15	12	18	15	16	27
CATACAGCTCTTTGGT	ref_5917_new	0	0	0	0	0	0	0	0	0	0
CAGCGCGGGTTGTGGT	ref_5917_new	6	9	8	10	10	9	5	4	4	3
CATTTTATTCGATCCT	ref_5917_new	21	21	20	14	22	17	23	26	20	13
TGTCCGAGGTGTTCTT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CCGCCTTTAAGGGAGT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
AGAACCTGTAAGCTCA	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCTGATTGGTAC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CGACTTTCCTTCATTG	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TATTTGTGTGCGGTTC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CTGCTGCAACTCGGCT	alt_3670_missing	0	0	1	1	2	1	0	1	0	0
GGATTTCCGTGTTCCA	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
GAGATAGATCGGCTCC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
AGGCTGACTCAACTCT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
GAGACCTTCTCGTATT	alt_3670_missing	0	3	0	1	0	1	1	1	2	1
TGTATTAGGGGCAATT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TAATTGTGCCCTCGCT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
GTTGTAGGTGAATTTT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TATTCCGTTTAATCTC	alt_3670_missing	3	0	1	0	1	2	3	1	2	4
AAGATTATATCTAAAT	alt_3670_missing	0	1	6	3	2	5	2	1	3	2
GCCAACGTAGCACATA	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
ACTTTTCTATTGGTAC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CCAGGGTCAGGAATTT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
GCCATCAGATTCTGTT	alt_3670_missing	1	3	0	2	3	0	2	1	7	1
GTCCCCGGGTATAGTC	alt_3670_missing	0	1	0	0	0	0	0	0	0	0
AGTCTTGCTACGCGCA	alt_3670_missing	0	2	0	0	0	1	0	0	0	0
TGGATCGTGTTAAGAG	alt_3670_missing	0	4	2	0	7	1	2	2	7	1
CTGTTAATTGTGGAAT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TCTGCTTCCCATATAG	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
AGCTTTCTAGTAACAC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CTCACCTAGATGTACC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TCAGAGCATGGCTGCC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
GTCTCCTTCTGTACAG	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
AATTACTCTGTGTAAC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TTAACATACCATTCTA	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CGCGAACAATTTACGT	alt_3670_missing	16	13	14	10	19	8	27	14	26	15
CCAGGTTATTGGATTT	alt_3670_missing	8	10	5	3	12	6	16	2	7	3
GTTACTACAAGTGATC	alt_3670_missing	2	1	0	1	7	2	5	2	2	0
CCCCTTCCCATGACAC	alt_3670_missing	0	1	2	2	0	1	1	1	2	0
CTCTGGACGGGGATGC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TATCGGTGGTTGCGGA	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TCGTTCAATGTCAGAA	alt_3670_missing	0	1	1	0	0	0	0	0	0	0
AGGCCACATCGAACAT	alt_3670_missing	4	1	3	3	4	2	4	0	2	2
CCCGAGGGGTTTCCCT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
ACGTCAGAAAATGTAG	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TACTAATCCCTATACG	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TGCAAGACTGGTAAAT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CAAGACTGCTCCCTAC	alt_3670_missing	1	0	0	0	2	2	0	0	0	0
CACTTGCACATTTTCA	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
GGACTATGCTCAGGCC	alt_3670_missing	2	0	3	1	4	1	0	4	1	0
CGTCTGTTCTCGCGCG	alt_3670_missing	1	0	0	0	1	0	0	0	0	0
GGGTCATCCACAGTAA	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
CCTTGTAAATCGCCCT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TACATTGCGTGGTAGT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TATGTCCCCGACATGT	alt_3670_missing	17	26	17	19	11	12	14	4	22	9
CGATTCTTGTACTTGA	alt_3670_missing	2	2	1	1	1	2	2	1	6	2
CGCCGTAACCACTGTG	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
TTCTCGTCTCTTCCAT	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
AGTTGTAAATTATCTC	alt_3670_missing	0	0	0	0	0	0	0	0	0	0
GTCTTAATAGCCGCGG	alt_1284_fdr	27	27	27	24	15	22	27	18	25	28
CATCCGCATTTTAAGG	alt_1284_fdr	53	47	74	63	56	50	71	58	50	43
TTCTGACCAGCGCAGT	alt_1284_fdr	248	239	282	282	270	238	279	203	270	191
TATACGTCAGTTTTTG	alt_1284_fdr	34	39	35	28	49	24	36	29	23	25
CCCTGGGTTGCGGGCG	alt_1284_fdr	89	82	91	61	67	64	94	82	84	64
ACCTTATAAGTTCTGC	alt_1284_fdr	52	56	64	33	44	43	52	46	58	44
GCGGTATCACGCTTAG	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
CGATTCTGTCTAGATA	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
TTAACATTTCTAGAGT	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
AGGTGATGTGGTCCTC	alt_1284_fdr	15	20	17	8	17	12	22	13	16	10
CAACCGGCTAAACTCC	alt_1284_fdr	15	14	10	8	23	12	25	7	21	5
CTGATCAGGTTTTAGG	alt_1284_fdr	81	69	107	74	84	64	90	89	82	74
AACTTCACCCATATAT	alt_1284_fdr	28	17	24	29	19	18	15	14	26	20
ATCCACTCTCGCGGAT	alt_1284_fdr	64	61	113	69	72	64	62	71	92	63
GGGCTTGCCAGTATCC	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
CTTTACAAGCTGTCTT	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCATAACATTTAG	alt_1284_fdr	90	95	92	77	86	81	94	99	89	76
TTAAACCTCGGGATTC	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
TTATGCGTACCGCAGA	alt_1284_fdr	45	38	45	32	44	45	60	40	44	29
TTAAAGTTCGTAGGGT	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
GTGTAAACTCAGGATG	alt_1284_fdr	26	23	27	35	13	24	31	30	24	25
TTTAGCGATAATGGCA	alt_1284_fdr	15	11	24	18	27	14	19	13	18	16
ATTATTGCCGTTCTCA	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
TGATCGCAACATCCGA	alt_1284_fdr	58	57	85	64	62	85	72	54	82	56
TGTCTGTTATCATTCG	alt_1284_fdr	8	14	14	12	14	9	13	4	14	10
CTTGCCTCAAATAGCC	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
ATACATCCTAGGACCT	alt_1284_fdr	33	50	62	57	68	61	75	38	72	55
CTGCCCTTTAGTGATG	alt_1284_fdr	29	23	23	27	36	19	23	26	25	19
AGCATTCGTTGCGGCT	alt_1284_fdr	171	206	203	162	199	157	177	153	196	150
GTTCTCAGGTCGGGCA	alt_1284_fdr	134	158	164	117	143	125	153	147	130	134
GGGTTAGAGGCTACTT	alt_1284_fdr	20	29	35	34	30	36	27	24	28	32
ACGGCCTCCGCACGCC	alt_1284_fdr	74	58	79	56	79	63	70	38	68	56
TATAATTATCGTGTCA	alt_1284_fdr	2	3	4	3	11	3	7	1	4	3
GGCCCGCTTTCTTAAC	alt_1284_fdr	44	28	39	32	44	46	37	25	38	32
CATGTTTATTCTGCCG	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
AGATTATACTCTTCAC	alt_1284_fdr	30	26	45	24	22	34	31	35	23	38
TGCCTCCGATCTCCCC	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
GATCCAGCTCATAGAG	alt_1284_fdr	20	29	27	32	22	15	26	28	37	17
CTGATCCGTGTCGCGC	alt_1284_fdr	26	25	33	18	26	32	31	35	32	26
AGTCTACCAGCATACG	alt_1284_fdr	26	33	31	28	29	32	30	28	41	32
GTGCAAGATAATATGT	alt_1284_fdr	11	7	18	11	5	15	15	14	6	10
TCGTGGTGGATGATCA	alt_1284_fdr	49	58	66	35	39	58	51	57	50	49
CATGCATGTTTGTTGG	alt_1284_fdr	56	48	64	46	57	43	49	41	61	36
GGAGGAACATGTCGTC	alt_1284_fdr	315	277	464	332	269	320	306	291	308	304
TAAGATTGTTGTAGTG	alt_1284_fdr	62	79	92	80	69	48	93	59	82	60
GAGCTAATCTTGCCAT	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCCGCCCGGTGGT	alt_1284_fdr	46	47	47	41	40	34	49	41	55	48
GGGTAGCAGATCGTTT	alt_1284_fdr	13	15	13	12	10	16	16	17	9	13
GGGTAGTTGTCGGCGG	alt_1284_fdr	19	25	39	33	26	35	25	36	37	24
TCAGCGCGAGCTTGGT	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
GGAACGCTACCTGATG	alt_1284_fdr	21	26	31	30	14	19	27	25	22	19
AGAGGGGTAGGCTTTT	alt_1284_fdr	70	64	81	61	67	55	65	62	84	60
GGTTCTACAATGCCGC	alt_1284_fdr	17	18	14	13	13	11	16	9	9	11
TTAGAGGATAGGCCCT	alt_1284_fdr	19	27	35	18	21	23	42	18	27	24
TCTCTATTAAGGTTCG	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
AAGATTCAGGGTGTCG	alt_1284_fdr	0	0	0	0	0	0	0	0	0	0
TTAATCTTGATACCGA	alt_1284_fdr	42	27	33	23	48	28	35	39	39	28
CCCCGCCTGAGCAGTA	alt_1284_fdr	17	21	16	12	20	12	16	15	13	4
TCTCCTTGCCTTCACG	ref_4258_missing	18	49	17	23	39	23	50	20	50	19
GTGGAATGGCCGCATT	ref_4258_missing	19	24	24	22	19	14	33	13	13	7
TAGAATTTCGGTATTT	ref_4258_missing	5	8	5	7	5	4	5	4	10	7
TGCTGAAGTTGAGGAT	ref_4258_missing	10	15	11	12	15	10	21	15	37	5
ATGCAGGATAAGTCAA	ref_4258_missing	8	20	10	5	11	13	10	8	15	9
TTGTTTTTCGATGGCG	ref_4258_missing	12	8	7	9	8	12	8	9	10	8
AAATGAGAGTCACTTC	ref_4258_missing	39	33	33	22	39	22	33	30	49	24
GAGATATAATGATCTT	ref_4258_missing	8	12	10	5	8	3	9	11	12	7
GTCTCTCGTGTTTTGT	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
ACTTAGGTACGGTGGC	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
ATTATCGGTCTTACAA	ref_4258_missing	35	43	40	33	41	30	53	44	52	40
AGAACATGATACTTGT	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
AGGTTCCATGACCCGC	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
ATTTAGCCGGTAATGT	ref_4258_missing	32	48	36	29	23	37	51	26	53	26
GGTTATGTAGGCGCAC	ref_4258_missing	13	30	24	24	16	9	30	18	37	11
TTAGGGTTCACTGAAA	ref_4258_missing	12	18	7	6	12	6	14	9	11	6
AATGCTGGCTATCAAA	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTTTACTTTGAC	ref_4258_missing	143	237	167	127	258	152	266	128	257	144
TAGCCGAATGTCGGTT	ref_4258_missing	29	43	34	31	54	27	41	27	51	31
TCCTAGCTAGATGGCA	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
GCCTCGCTCAAAGGCC	ref_4258_missing	64	99	105	67	92	76	86	76	75	71
TTATGACTTCACTTAG	ref_4258_missing	9	22	16	9	22	18	22	6	29	15
AAGTGCATTTCAGGTC	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
GGGCTGCATAGACGTT	ref_4258_missing	4	6	4	1	6	8	10	6	9	2
TTGTTAGATTTTCCGA	ref_4258_missing	20	27	24	24	43	19	29	16	23	24
TGGTTTCTATTACGTT	ref_4258_missing	28	61	38	20	45	25	50	22	37	24
TTGCCAAGCAATTTAC	ref_4258_missing	1	3	3	1	1	1	5	1	6	2
CCGTGTACGGGGGATC	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
TCGATTCTCTATCCGC	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
ATAGCGGACGTAATGC	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
CTGTTGTTTTCCGGAC	ref_4258_missing	16	27	31	24	25	16	24	18	29	17
GTATCAACATGCAATT	ref_4258_missing	20	32	16	35	44	28	30	26	27	23
TCCTTTTGTTTGTGTG	ref_4258_missing	15	23	27	16	28	27	31	22	36	19
GAGGAAGCACTCCAAG	ref_4258_missing	19	26	25	17	24	14	27	13	29	15
ATAAGTCCCGTTTATT	ref_4258_missing	84	107	101	65	114	87	126	59	113	74
CAATCGTTGCCGCGCT	ref_4258_missing	14	43	18	14	27	18	29	14	40	19
GCCAGTCTCACACCAG	ref_4258_missing	47	72	49	39	69	50	83	32	92	23
CCACTTTCCCCCGAAA	ref_4258_missing	4	22	16	8	20	7	24	6	15	8
CTTTTAGATGTGATCC	ref_4258_missing	6	10	4	13	9	6	14	3	8	2
GAATGACCTATCGTAT	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
TAGTGTCTCTCTACTG	ref_4258_missing	17	43	38	19	30	22	51	20	44	25
TTTTAAGTCTTACCAT	ref_4258_missing	16	44	26	26	67	29	56	21	53	22
ATGGCCACTTCCAGGG	ref_4258_missing	50	71	57	48	106	32	75	43	91	34
GGCTTCGTTATCCTGA	ref_4258_missing	0	0	0	0	0	0	0	0	0	0
TAGTAGAAAATGGCTG	ref_2134_reverse	123	87	140	167	91	128	100	126	106	130
GCACTTGTTTTGGTAG	ref_2134_reverse	62	73	98	51	74	64	70	62	102	42
TGCTTATCCGGGCTTA	ref_2134_reverse	148	119	169	149	173	148	147	151	136	118
GCACACCCGGAAATTA	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TACGGATTATCGTCAC	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TTCTGATAAGTTTGTT	ref_2134_reverse	11	15	19	15	18	15	17	11	23	20
CTTATTGATACTTCGA	ref_2134_reverse	39	50	56	30	43	40	46	38	70	25
CTATTGACAATGGCTT	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
CGGTTTTTGTCTGACG	ref_2134_reverse	21	19	24	24	34	14	17	14	25	22
CCCGTTTATAAACAGA	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TCCCAGGTCGCGTATT	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TACGAATCTCGAAGCG	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TATAGGCGGAAGCCCT	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
CATAAGTTTGGTGCCC	ref_2134_reverse	119	132	134	98	125	103	154	102	156	117
TGTAATTGTCAAGCGA	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TGAGACTCGTCCCACA	ref_2134_reverse	28	33	41	29	20	30	36	26	34	30
ATTTAGAAGACTGCGA	ref_2134_reverse	32	25	31	31	40	32	34	33	45	24
GGTCTTCCTCCTCAGC	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
AATCGTATATTCACGA	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
CGGTGCACCAGGTTAT	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TACCTCCTAGCTCTAG	ref_2134_reverse	0	1	1	1	2	1	2	0	1	1
TAGGCGGGTTCGGCCC	ref_2134_reverse	113	110	122	107	89	95	109	65	110	97
CTCTTGCGCGGATATT	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
AACCAGTTAGGTGAAG	ref_2134_reverse	9	10	8	7	8	5	19	16	8	12
GCTCACCTCGCGGTTC	ref_2134_reverse	48	47	60	60	49	37	72	39	81	42
ATTCCGGGTACGGTGA	ref_2134_reverse	63	63	67	51	56	58	51	48	37	62
ACGCAACGATTAATAG	ref_2134_reverse	46	47	63	51	59	53	53	39	50	46
TTACGAAGATTCATTC	ref_2134_reverse	23	20	52	29	33	32	19	21	22	28
CTTCCTGGGCGGAGTC	ref_2134_reverse	41	59	43	44	40	39	55	32	45	38
TCGCCAAATACAGCAA	ref_2134_reverse	2	3	4	1	6	2	1	3	3	1
CGTGGGCTTCACGGAT	ref_2134_reverse	30	27	38	31	29	34	22	29	34	32
GTACTGTAGCAGGAAT	ref_2134_reverse	2	4	3	5	5	2	3	1	2	0
GCTGCATCAAAGTCTT	ref_2134_reverse	9	22	21	9	12	10	21	8	17	13
TGTACGTTGTTATAGA	ref_2134_reverse	78	67	118	102	96	113	83	89	121	103
ATACCGCTATCTCTGG	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
AGTAAACCTTGTGTCT	ref_2134_reverse	88	72	101	73	84	66	91	69	76	70
TATGGCATATCTAGAA	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
CTGTGTTCATTTAGTG	ref_2134_reverse	64	60	63	61	57	50	71	59	76	32
TTTGCTAAGAGCCGTT	ref_2134_reverse	46	60	44	46	63	52	77	59	80	44
TCCTTGGGCTCCTGTT	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TAGAAATGCAGAAATG	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
CCTTTTTCGGTGTGTT	ref_2134_reverse	33	28	43	37	42	29	30	38	32	20
TAGCAGAGAGCGCGTT	ref_2134_reverse	20	29	29	32	25	24	22	16	20	17
TCTGTACGATGAGCCG	ref_2134_reverse	60	81	90	68	67	80	67	73	86	61
CTGGGAGGCTCTCCAT	ref_2134_reverse	22	21	43	28	31	27	33	28	31	19
TGACGTAGTGATTATT	ref_2134_reverse	26	21	24	14	16	28	20	20	14	23
ATTCCTATCGCAGCAA	ref_2134_reverse	3	4	4	2	1	5	0	2	2	2
ATAACCTTGTGACCGC	ref_2134_reverse	4	5	8	9	7	6	6	7	1	2
GAGCTTCATTCATTAT	ref_2134_reverse	16	9	26	8	15	7	22	5	15	11
TTTATGTCGAGCCTCC	ref_2134_reverse	32	44	52	30	44	42	58	46	49	44
AGGGGTATTTGCATTA	ref_2134_reverse	57	76	72	65	59	75	74	49	68	56
TAGGTTCTATATATAC	ref_2134_reverse	74	123	82	79	78	69	77	86	113	70
CTCATACGACCACATT	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
TTACCTCCCATAGCAG	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
CCGCAAGCAGCCTCTC	ref_2134_reverse	23	49	33	26	55	25	62	21	49	21
AGGGACTTTACTGTTG	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
ATTGAACCACGCGAGG	ref_2134_reverse	0	0	0	0	0	0	0	0	0	0
ACTAAGATAATAGTGG	ref_2558_RC	26	53	20	25	55	27	42	18	40	23
TTGCCCTGGGTGTGCG	ref_2558_RC	8	16	4	6	17	4	13	7	17	6
CTCTCTCACTCTGTTT	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
CATTCCTACCTGTCGT	ref_2558_RC	4	20	5	3	31	4	25	4	34	3
GGTACGATTATTCGTC	ref_2558_RC	23	43	30	17	49	21	45	15	53	23
CTGCCAGGCTCCAGTT	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
GGGTTCAGATACGCGC	ref_2558_RC	3	8	12	8	11	4	10	3	13	3
TGATTCTACTGCACGT	ref_2558_RC	15	26	8	10	29	22	41	15	43	7
TTGTTCGGCCGGCATC	ref_2558_RC	19	42	28	16	45	11	31	23	33	14
CTGACGTTAGATGTGC	ref_2558_RC	11	24	22	8	19	15	22	10	24	14
ACTTCGCTACAGTGGC	ref_2558_RC	9	26	13	10	33	9	24	12	24	11
ACGGCGATTCTTACAA	ref_2558_RC	21	70	32	25	63	30	59	27	54	28
ATGTTCGAGAGGGAGT	ref_2558_RC	3	6	0	0	17	4	4	4	11	1
ACTAGCAAGATTTGTA	ref_2558_RC	15	38	16	15	55	12	50	17	49	19
GATAGGCCGGTAATTA	ref_2558_RC	2	5	5	4	5	2	8	5	5	2
TGTTGGTAACTACTTC	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
TCGTAAGTCCTGACCG	ref_2558_RC	1	5	2	3	0	3	7	0	2	4
CGATACTAGCGCCCGA	ref_2558_RC	46	71	50	38	58	31	59	51	53	49
ACTCCTTCGAAAGGTT	ref_2558_RC	4	18	7	2	18	8	24	3	18	3
GTAAAAGAATTACAAT	ref_2558_RC	7	22	9	12	28	7	11	12	30	7
GGCCATGATTCGGAAA	ref_2558_RC	24	51	15	12	54	28	54	19	57	24
TGTATGCTACCTGCAT	ref_2558_RC	10	25	13	4	19	9	23	6	22	7
ACCGGCCTGTTCACTC	ref_2558_RC	17	35	25	28	50	30	48	13	40	21
GTTTTTGTTCACCGGT	ref_2558_RC	10	28	11	13	15	6	24	8	14	9
CGGTTTTAGAGATGTC	ref_2558_RC	18	38	35	19	55	24	43	24	56	14
GAATCGGCTAACCACA	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
TTGGGCTAGATCTCTC	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
TTGAAGCGAAAGGCTG	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
TTTCGTGCCGACCTAC	ref_2558_RC	18	32	15	10	32	13	39	17	52	13
GCCGCATGAACGCCGT	ref_2558_RC	12	33	23	18	35	15	37	10	28	12
TGCTCAGCATCAGATA	ref_2558_RC	31	82	64	39	82	23	83	52	94	39
AGGACTCCGCGGCGTT	ref_2558_RC	0	6	3	2	3	0	1	1	8	0
CATGGCGCTTGTGGTC	ref_2558_RC	26	27	19	19	27	14	31	19	35	20
GTGAACCACCTGTTCC	ref_2558_RC	20	94	28	30	71	20	92	24	72	27
TACCGCTCATTGGTAC	ref_2558_RC	2	6	1	1	8	1	4	0	6	1
TCTCGTCACTGCCAAG	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
CGTTTGAAGGTACTTA	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
CGTCTCCTAACTACGT	ref_2558_RC	32	72	43	41	62	38	75	37	79	29
ACGCTTAAACCCGCCT	ref_2558_RC	11	26	12	16	19	10	18	11	21	7
GGTCTCATGACACCGA	ref_2558_RC	9	7	3	7	12	8	16	6	13	10
TTCGTCTCAAAAAAGT	ref_2558_RC	0	0	0	0	0	0	0	0	0	0
CCGGGCCGTCGTAAAG	ref_2558_RC	4	26	12	12	17	5	27	4	29	10
CAAATAGGTCATTACG	ref_2558_RC	2	19	8	3	12	4	13	2	13	4
TCGTAAGTTGCGTTGA	ref_2558_RC	14	28	13	12	31	7	11	8	13	6
GTTAGTCATTTCTTTG	ref_2558_RC	47	80	51	38	84	49	81	34	93	29
GTTAGTTTTTCGTAAT	ref_2558_RC	38	95	41	33	81	38	80	24	101	35
CTGCTGTTCTTCTCCG	ref_2558_RC	11	19	16	15	25	12	17	14	32	13
GCGAGATGGTCTGATA	ref_2558_RC	10	28	20	11	15	11	32	14	41	14
TGTCTAAATATCTGTA	ref_1947_missing	121	165	128	94	178	101	192	97	197	104
GTCAAGAACCACTTAT	ref_1947_missing	17	54	35	18	62	31	41	21	63	23
TGTTCTCACCACCTTT	ref_1947_missing	10	14	27	13	24	18	17	12	25	18
CCTGGCTAATAGAGAC	ref_1947_missing	1	6	3	3	5	3	10	0	2	5
TTAGCCGTAGAATCAC	ref_1947_missing	12	22	16	14	18	16	23	11	23	9
AGGCCGGGTAGGAACA	ref_1947_missing	2	6	7	0	3	1	5	1	4	1
CAACTAAGTGCGACGC	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
GAGCCACTAACTTTGA	ref_1947_missing	28	79	31	26	87	23	59	15	78	20
AGCACTCGAGAATGCA	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
CGAGAAAATACGAGCG	ref_1947_missing	17	21	18	11	20	15	32	18	29	11
AAAGTTTGACGGCACG	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
TGTATAGCAATAGTTC	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
CTTCGTATCATCCATC	ref_1947_missing	36	51	33	26	46	25	59	24	44	32
TCGGGGTCCGAAAATG	ref_1947_missing	4	8	7	2	6	4	10	4	6	2
GACGTCACTCCTTTGC	ref_1947_missing	1	9	0	6	8	1	6	2	4	2
TTACAAATTTTTGGAT	ref_1947_missing	16	31	29	32	40	18	38	13	41	19
TTTTGTTGTTTTAAGA	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
GAACCCAGTGCGACAT	ref_1947_missing	25	54	38	25	59	19	44	26	63	21
TCCCCGCCACTGTCCT	ref_1947_missing	21	27	20	20	28	20	28	19	36	15
TATCCCCGAATTTTAG	ref_1947_missing	28	55	26	23	62	21	58	29	62	23
CCCCCCGGATTTTGTA	ref_1947_missing	17	21	13	11	37	16	32	12	42	6
GGGTTTCTCGAGTCAC	ref_1947_missing	4	5	5	3	1	1	6	10	5	1
AAATGTAACGACGATT	ref_1947_missing	31	53	32	25	55	20	68	33	67	29
GCTAGGCCAGTTCAGA	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
ATATGATATTTGATGT	ref_1947_missing	1	5	2	2	2	1	2	0	2	0
TTGGAATTCTCAAGTA	ref_1947_missing	6	6	3	2	0	6	4	1	4	1
TGTATGTGCCTTTGGT	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
ACGGATGTCACTCAGC	ref_1947_missing	27	35	37	27	54	28	43	19	44	28
TCGCGCTTAGCCACGT	ref_1947_missing	6	15	6	6	8	5	14	3	6	4
GTTGGTTGATAAAATA	ref_1947_missing	9	4	2	1	10	6	13	2	9	4
CTACCTCGCATGCATG	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTCTGTTCGCAG	ref_1947_missing	3	4	0	2	3	0	2	1	1	1
CGACGATTTGATTGTA	ref_1947_missing	17	27	23	9	35	18	26	16	26	19
TGCATTGGCGTTTGCG	ref_1947_missing	4	30	16	8	31	11	33	16	26	16
CGCGAGACGATGTGTC	ref_1947_missing	10	10	15	9	15	10	11	5	18	9
GGCTCACGTGCCAATC	ref_1947_missing	4	7	6	8	7	10	15	1	7	5
GCGTCCGATCAGCGTA	ref_1947_missing	11	40	23	22	64	12	40	10	51	14
GGACCGCCGCCAGAAG	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
TGGCTATACGGCATGT	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
CGGAGACGCAGTCCAA	ref_1947_missing	0	0	0	0	0	0	0	0	0	0
AACATTTTCGCGGGCT	alt_4553_RC	17	17	27	23	20	14	22	18	23	24
GAAGGAGTCCGAATGG	alt_4553_RC	3	5	5	3	3	8	7	5	7	6
AGGTCCTAAAGCCCCT	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
TACTTTGCCCCTAGTT	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
CCCATCCATCTGTTAA	alt_4553_RC	20	67	29	19	88	25	58	28	76	16
TGTTTGGTTCGGACAT	alt_4553_RC	15	31	18	22	20	13	28	19	34	17
GGATGAGGCTCGTAGC	alt_4553_RC	35	40	38	39	49	27	41	25	51	32
GAATTATACTCTACGC	alt_4553_RC	216	336	343	232	363	248	329	275	371	240
ATAGTGCATAGGAACC	alt_4553_RC	9	14	11	5	11	6	9	5	20	8
AAAGATGCGAGACGCG	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
TGTCCTGCGAATGTTG	alt_4553_RC	30	35	30	28	43	29	33	30	23	21
AGATGGTGCGGGCTTG	alt_4553_RC	24	24	36	23	19	34	33	27	40	32
CGGACACCGGTCGGTG	alt_4553_RC	61	106	77	66	108	60	99	55	118	45
AATAGCGTCCCTCTAT	alt_4553_RC	26	42	42	35	50	34	39	32	44	38
GTTCTGCAGTAACTTG	alt_4553_RC	20	28	29	26	26	27	39	20	38	16
GGCATACCCTAGGGCC	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
TGATTTTCTTACTAGC	alt_4553_RC	2	11	6	5	8	13	13	12	15	6
TGACACTCGTTGGCTT	alt_4553_RC	14	19	7	6	11	2	26	12	29	4
CCGCTTCGAGTATCCG	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
CTCTTCACAGTCAAGA	alt_4553_RC	394	502	424	343	488	371	531	321	561	328
ACGATGTGCATTCAGG	alt_4553_RC	24	28	26	16	26	12	22	20	19	14
TGGTTCAGTCACGGAT	alt_4553_RC	39	41	41	44	66	52	56	43	79	37
CGCTGTCCTGATGTCC	alt_4553_RC	19	20	22	16	31	19	30	16	19	17
AACTCTAACTAACTCC	alt_4553_RC	11	7	15	9	15	16	10	12	6	8
TGTTGCGACGGGAAAT	alt_4553_RC	149	134	168	126	144	123	142	99	154	115
TTCCTTGAGCGTGACT	alt_4553_RC	104	132	139	87	129	78	123	99	133	80
AATTCAAGTCTCTTGA	alt_4553_RC	14	2	7	7	10	8	10	9	8	3
TGTGGATGTTCTGAGG	alt_4553_RC	26	17	27	15	30	17	21	14	28	19
CCTGGTTCTTTATTCG	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
TACTGGGTTCTGGTAC	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
CTTTCTCCACAGCGCT	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
CGGGTGCCTGGTTCCT	alt_4553_RC	45	57	47	50	63	46	51	35	52	44
CCGGCAGCTTTGGTTT	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
TTGCTCGGTATAGTAA	alt_4553_RC	80	94	111	71	90	88	93	78	115	64
TGGCGTTTTGCTGCAC	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
GCACACGATGTCCCTC	alt_4553_RC	33	49	44	18	37	30	53	33	30	29
GGCCTCGTCTACGGTG	alt_4553_RC	4	9	9	5	5	9	15	8	17	11
TTAAAAGGTCTTGGTA	alt_4553_RC	0	0	1	1	0	0	1	0	0	0
GACATCCCCGCCTCAA	alt_4553_RC	14	14	5	14	15	12	10	7	23	8
ACATGTGTAGGCGGCG	alt_4553_RC	76	112	104	86	117	70	131	68	118	79
GCATGGGTACTTGTCA	alt_4553_RC	9	29	19	14	22	16	33	16	28	13
GGGGAGGTAGAACGGT	alt_4553_RC	0	0	0	0	0	0	0	0	0	0
AACACTCTGTTTCCAA	alt_4553_RC	50	80	74	69	69	50	82	55	75	46
CCGCTACCGGGGGTGG	alt_4553_RC	5	19	6	9	46	5	29	8	38	0
AACCAATTCTGTAGTG	alt_2605_RC	16	10	9	5	6	14	10	4	14	7
TCTGGCCTCATCGTTC	alt_2605_RC	30	18	28	23	14	21	12	18	25	25
GGACCGGCGCTACGAG	alt_2605_RC	86	42	100	85	50	72	68	72	51	78
TGTTCTACCTGGGTAA	alt_2605_RC	46	16	53	41	29	35	27	26	22	39
TATGCTCAGAGGATCA	alt_2605_RC	2	7	6	3	6	13	2	10	4	6
GGCATCCTGAAAAGTT	alt_2605_RC	48	25	51	44	28	35	27	29	28	31
GAATGGCGGAGCACGG	alt_2605_RC	95	45	99	83	40	95	46	80	36	92
TAACCTGCGGGGGCCA	alt_2605_RC	12	10	21	21	16	6	6	20	10	15
ATGGAAAGAAATTCAA	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
ACGCTGCAAATGTCCG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
TTAACTTTAGTGCGGC	alt_2605_RC	37	40	34	46	28	43	36	49	27	29
TGAATGATCGTGACTT	alt_2605_RC	10	9	17	16	9	10	11	13	7	9
ATCTTACCGGTTTTCG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
TCTATCTACCTACCCA	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
TAAGCCACATCGTCGG	alt_2605_RC	14	7	13	12	16	15	11	16	6	12
GCGTTCAAATTCACCG	alt_2605_RC	78	66	105	109	80	103	76	83	102	73
ACCATCGGCCCAGAAC	alt_2605_RC	12	14	9	17	13	15	9	14	13	16
GCTAAGTGTCTATGGC	alt_2605_RC	31	44	51	45	47	42	42	39	58	36
CGAGATATGTCTTCGT	alt_2605_RC	57	26	69	60	31	52	39	60	39	45
CTTTCGGCTATTGTGA	alt_2605_RC	97	64	130	105	44	89	66	69	79	74
GAAGATATTCGCCCAT	alt_2605_RC	16	7	21	14	17	14	14	17	16	21
CTTTACGATACGGGAT	alt_2605_RC	207	176	326	241	153	253	160	256	168	236
TACGGTGTGCTTTCAA	alt_2605_RC	26	15	32	28	30	27	15	33	14	19
TTGTAGAATCCGAAAG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
GGTTTCTCGCACGACT	alt_2605_RC	261	163	307	248	140	196	142	209	141	205
GAGGGAAGATAAGTAT	alt_2605_RC	13	10	27	12	13	15	11	16	6	24
CCTGGCCTAGTGTCAC	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
CTTCAACAGCAAGTGC	alt_2605_RC	7	6	5	10	5	7	5	6	11	7
CGGCGGTAGTGGCTTA	alt_2605_RC	4	3	2	3	5	5	0	4	3	2
CTTGCTTATCTACTAG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
ACTGGCCTCTTTATGC	alt_2605_RC	59	39	51	59	42	35	37	40	42	69
GTACATAGTTCTGCTT	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
ATCGCTACAGCGAAAA	alt_2605_RC	107	74	130	106	55	75	66	91	64	78
GGTTAGCGTTCGTACC	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
CTGTCCTTTTCACGAT	alt_2605_RC	81	43	89	72	43	58	41	66	65	78
ACAGCTTACTGCGCTC	alt_2605_RC	3	4	8	8	3	8	8	4	3	4
CGACGTGGCTCCCTAG	alt_2605_RC	13	2	10	5	5	7	10	8	4	7
CTGCCGGTTCATATGG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
TATTATTACCTATATC	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
CGGGGGGATTTGGAGT	alt_2605_RC	76	40	68	78	39	66	55	68	40	67
GCTCGTGATGGGTCTT	alt_2605_RC	17	9	13	17	13	14	11	15	11	23
CCGGACCAAATGCGCG	alt_2605_RC	1	1	1	3	4	1	1	2	2	1
GGTGGCCATCCGAACG	alt_2605_RC	350	259	458	343	305	369	268	332	256	330
TGAACTCATCGACGCT	alt_2605_RC	55	31	59	60	31	36	38	55	28	52
TTGACGGCTCGAGCAC	alt_2605_RC	4	8	4	9	8	4	10	10	9	9
ATTCAAAGTGGGTGAC	alt_2605_RC	125	66	150	131	89	117	100	134	85	103
CTGCATCGGAAACTTG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
ATTTACATATCTGATG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
CCAATGGTCTGCAGTA	alt_2605_RC	4	9	9	7	10	12	11	10	11	8
CAGATTTTGTGGGTAG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
ATATGTCTCGGCCTTT	alt_2605_RC	21	15	23	28	5	19	14	17	10	16
TGTACATTATTAACCT	alt_2605_RC	26	23	45	32	20	32	25	32	26	18
GTAAATAGTTCAACTG	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
GCGCTCGTTCAGTTGA	alt_2605_RC	6	8	11	9	12	8	8	10	10	10
ACTTGTCACGAGCCGC	alt_2605_RC	2	6	2	6	2	5	1	8	8	2
GGGGGTGCTGTTAAGC	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
GATCCTCCCGCGGAGA	alt_2605_RC	85	42	90	84	61	81	53	68	57	61
GTAGTATCTCCGCTTT	alt_2605_RC	9	5	12	8	6	6	2	5	7	5
AATGGTTTCACGTAAT	alt_2605_RC	190	116	226	198	109	184	119	178	106	145
TTTTGTATGACTGGAG	alt_2605_RC	51	55	77	59	47	53	37	52	47	56
GTTTTGTGATCAACTT	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
TAAACCATTTGTATCC	alt_2605_RC	36	22	47	20	12	21	15	18	21	30
CTGGTCCGGGTACGCT	alt_2605_RC	0	0	0	0	0	0	0	0	0	0
CTGTTCTTGTCCCCTT	alt_2605_RC	28	17	45	37	26	28	21	25	24	30
AACATGGTTTATGGTT	ref_4506_missing	6	9	4	4	6	9	16	9	9	0
CCCAGCATTGGCGACA	ref_4506_missing	4	8	4	2	5	6	5	2	7	3
TAAAATCCAGTCATCC	ref_4506_missing	14	27	20	10	45	12	33	19	29	14
TTCATCATCCGACATT	ref_4506_missing	21	30	33	36	40	30	26	24	38	22
GTCCGCACGATGTACC	ref_4506_missing	11	25	22	12	40	15	34	14	31	16
GCTTTTTGGCACATCT	ref_4506_missing	34	70	49	42	62	29	70	21	63	35
TCGGCATTGCTTAAAG	ref_4506_missing	6	6	9	7	8	2	8	4	5	7
CCAATCGTGCTAATTA	ref_4506_missing	5	11	9	9	14	3	5	6	11	5
CGTTCGAGGACCAGTT	ref_4506_missing	19	14	16	9	18	14	20	15	28	13
AACTATAGTCATCTGG	ref_4506_missing	6	14	4	7	5	3	15	7	15	8
TCTATGAGGCGTGTCT	ref_4506_missing	8	16	5	6	8	1	11	11	9	4
AGCTAAAACCGGGAAT	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
ATGTAATATGTGGATA	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
TAGATAAGTACTAATG	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
GGTAGGGGCACTTCCG	ref_4506_missing	14	17	8	9	13	8	12	8	21	8
AATGTATTGACCTGGC	ref_4506_missing	2	1	2	5	6	3	6	1	11	3
AGCCTGAATCGGCTAT	ref_4506_missing	2	3	3	2	3	0	1	1	1	2
CCCACACCAGTCATGG	ref_4506_missing	20	44	27	28	44	23	52	20	34	15
GTCCTAATTGCACCTG	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
CTCACTCTAGGATTTC	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
AGGTGGTCATAGGAAC	ref_4506_missing	24	31	25	23	36	16	48	32	34	28
TCTGGAAATCGCTCCT	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
ATATTGTCTGGAGCCT	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
TTTATCGCCTGAACAA	ref_4506_missing	19	25	17	27	41	15	29	20	36	4
TTTTGACTTGGCCCGA	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
TATATGCCTATTGAAA	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
AGTCACATGTGTTTTG	ref_4506_missing	20	59	27	27	33	28	53	29	53	21
CTTTCGGTATTGACTC	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
AACTAGAAACAATATT	ref_4506_missing	0	0	0	0	0	0	0	0	0	0
TGATTCTTGGCGTACG	ref_4506_missing	68	133	90	81	142	73	123	51	134	66
TGATCTTTTGATCTTC	ref_4506_missing	8	6	6	3	9	6	12	6	8	9
GTGGCTACGCGGGAAT	ref_4506_missing	21	37	26	20	30	25	39	15	34	23
GGGATGCACACGAGCA	ref_5942_new	0	7	6	2	1	2	10	3	3	1
ATTTATGAGTGTACAG	ref_5942_new	11	26	26	11	28	25	32	18	30	24
CAGTTACACCAAGAGC	ref_5942_new	90	218	126	94	202	88	201	99	221	106
GTCCACTTCGTCCGTT	ref_5942_new	25	48	18	17	54	20	47	26	73	13
CCAGCGGTGTTGATTT	ref_5942_new	5	11	6	9	9	3	20	5	30	5
TTAAGCTATTCTATAC	ref_5942_new	2	8	5	2	12	4	16	5	4	2
CGTTTTACCCGTCCTT	ref_5942_new	7	9	15	2	21	6	26	8	7	6
CGCTTATGGGCGGTAG	ref_5942_new	6	11	5	1	10	2	9	4	4	2
AGCGAGAGTTTCGTGC	ref_5942_new	19	40	21	8	35	10	43	9	41	10
TTTGTTCTGGTGCCTT	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CTCGTATTTCATCGAC	ref_5942_new	65	166	94	70	159	89	172	72	177	72
TCCGAGTCTGTGCGGG	ref_5942_new	2	7	2	0	13	0	10	1	14	1
TGGTCAGATTATAGAT	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CGGTTCTGCCGGACCA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
ACCGTCTTGGTGGATT	ref_5942_new	5	11	10	6	19	9	18	6	19	7
TATATGCTCTATATCG	ref_5942_new	21	26	11	16	25	9	20	11	39	11
TTGGAACACCTTGCCC	ref_5942_new	11	33	20	18	39	15	33	11	34	10
TCTTCCCGGTTATTTA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CCATAGGCAATCTTTG	ref_5942_new	3	15	4	1	9	3	7	4	17	1
TTCTTGTGTATCATCG	ref_5942_new	0	0	0	0	0	0	0	0	0	0
ACGGAATTCGGTGCTT	ref_5942_new	12	11	7	8	10	6	7	12	4	5
GGGAAGCAGATGTCTT	ref_5942_new	16	27	22	24	37	14	26	15	22	13
ACCGGGTGAGGCGGCA	ref_5942_new	27	69	43	25	55	32	48	30	70	28
GTCCTCTCGTAATATA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
TGGCAGCCGATCGCAG	ref_5942_new	36	73	63	52	78	46	73	28	72	44
TAGTCCGGGTTGCATA	ref_5942_new	3	9	5	3	11	4	8	2	9	3
AACAGTCTATAGCGTC	ref_5942_new	10	29	11	6	18	13	23	5	28	5
TCGAATTTTGAACTTA	ref_5942_new	25	56	31	31	53	17	64	29	62	16
GTCGTATCGCGGCGAA	ref_5942_new	10	14	5	4	25	11	19	5	18	6
CAAACACACTAGGGCC	ref_5942_new	0	10	6	4	8	1	7	2	8	2
CTCTTGGTTCTTGTCG	ref_5942_new	21	37	29	31	33	16	43	15	59	13
TGGTCCCTAATTGGGT	ref_5942_new	15	30	11	14	21	11	25	17	44	18
CTCTAGATGCGAGGCA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CCGGCTTCCAAACGCA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
GCTAGCTCAGGCCTGA	ref_5942_new	13	46	23	19	36	20	51	27	42	28
GTCGTTGTCTTTCATA	ref_5942_new	1	1	1	1	2	1	2	0	2	2
TTCATCACGGTGTAAC	ref_5942_new	0	0	0	0	0	0	0	0	0	0
AACGATAGGAGATCGT	ref_5942_new	53	78	58	37	73	34	63	49	69	48
TACGAGGGTTGGCCTT	ref_5942_new	11	8	9	5	12	5	16	4	15	10
TACTTAATGTCCGTCC	ref_5942_new	70	129	73	57	127	69	117	69	150	63
GGATTATTTTACGTGC	ref_5942_new	26	36	14	17	23	25	39	10	47	12
GTGGCTCTGTACTTTG	ref_5942_new	3	10	4	4	13	6	9	4	19	6
TCTAGTTGTTTTCCGA	ref_5942_new	12	12	7	9	15	7	16	5	10	2
TATCTGTATCTCCAGG	ref_5942_new	30	58	44	49	49	25	58	30	68	30
TACTACCCATCAGAGT	ref_5942_new	7	14	8	3	7	4	10	4	19	2
CTTCGGCAATTGCTGT	ref_5942_new	0	0	0	0	0	0	0	0	0	0
GTGGGGCTAATCGGCG	ref_5942_new	18	19	26	15	28	12	28	18	28	13
CGTAACTGAGTAGGGC	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CCAGTGTAAATCGTTG	ref_5942_new	0	0	0	0	0	0	0	0	0	0
TCATTGCCCGCCATGT	ref_5942_new	19	24	27	20	17	20	33	14	26	18
CCAGGTGTTATACGTT	ref_5942_new	0	0	0	0	0	0	0	0	0	0
TCGTCCCGGTATATGA	ref_5942_new	1	21	11	7	16	5	21	3	23	2
CCGAGTGGCATACCTC	ref_5942_new	5	11	7	4	10	4	12	5	22	4
ATAATATTTCTTTCCT	ref_5942_new	42	65	67	42	47	42	75	32	61	34
CGGCATGATCTACTTA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CAAGGGTCTGCCGTAT	ref_5942_new	57	101	67	75	110	45	110	61	115	43
GCACATAGCCCATTCA	ref_5942_new	24	67	40	34	59	36	81	28	77	23
TGTCTGAGAATGATCA	ref_5942_new	17	56	31	20	65	28	58	23	66	20
CCTTTGCTGTAAGGTT	ref_5942_new	2	8	10	6	18	11	12	9	13	15
CTTACCTGCCGTTATC	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CGTTGGCTTCCCTTAT	ref_5942_new	33	33	43	20	51	25	38	44	56	19
TGTTCCGTCCATTCCA	ref_5942_new	6	21	9	2	15	15	21	8	27	11
GAAGCCGGCATGGCAT	ref_5942_new	0	0	0	0	0	0	0	0	0	0
CCTTCAGCGATGCGCT	ref_5942_new	0	0	0	0	0	0	0	0	0	0
AACGTTACAACATTAT	ref_5942_new	15	26	22	15	27	18	33	14	34	12
TCTCGCCCTCTTACTC	ref_5942_new	0	0	0	0	0	0	0	0	0	0
TTAGCCGTGTTCGATC	ref_5942_new	26	104	25	24	108	34	91	19	106	26
AGTACCCTTTGCATCG	ref_5942_new	38	106	58	39	98	48	91	39	113	52
TTTGAGCCCGACCGAC	ref_5942_new	12	9	13	1	10	3	15	4	10	7
ATCGCGAATTCGCCTC	ref_5942_new	13	35	19	23	35	14	34	10	27	15
TTGACTGAGCTCATTG	ref_5942_new	21	34	23	30	45	18	39	24	40	25
TACGTTAGGGTGGAAG	ref_5942_new	0	0	0	0	0	0	0	0	0	0
ATCCCGACCTCGCATA	ref_5942_new	12	46	16	10	54	11	47	8	51	12
TTTGCACCCTTGAACC	ref_5942_new	0	0	0	0	0	0	0	0	0	0
GTGTATTCAGCTCACG	ref_5942_new	0	5	2	4	2	1	4	2	7	2
CCGATATTTATTTGTA	ref_5942_new	19	32	19	12	34	22	32	17	50	12
GATGGCCGTCATTTAA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
TGTCTCGGGATGAATA	ref_5942_new	0	0	0	0	0	0	0	0	0	0
GCATTGGGCCCTTCTG	ref_5942_new	43	60	39	39	77	29	70	28	58	37
GCCTTCGCGTTCTCGT	ref_3288_missing	122	168	123	109	127	123	135	110	147	104
CTTTGTCTCCACAGTT	ref_3288_missing	14	33	15	14	24	18	25	12	27	5
ATCCGTTTGAGGATCG	ref_3288_missing	12	10	8	10	11	5	10	3	6	6
TTCGCTTCCACAGGGA	ref_3288_missing	62	63	63	61	59	44	41	56	62	46
AGTCGTATAGTCATAT	ref_3288_missing	12	33	18	20	12	9	20	12	18	10
TTACCCAGCGTGGGGT	ref_3288_missing	51	57	50	51	52	56	52	40	64	47
CCCCTTTCAAGTCTAC	alt_6100_new	2	2	2	1	2	2	3	1	3	0
TTAATATAAAGAGGCA	alt_6100_new	19	36	27	18	21	26	34	24	36	15
AGATCATGCGTCATGT	alt_6100_new	19	27	17	19	15	14	24	13	9	15
CGGAAAGTCTACTGAT	alt_6100_new	0	0	0	0	0	0	0	0	0	0
AGACTTGGGGCACAGA	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CCTCTTCATAACTTTT	alt_6100_new	0	0	0	0	0	0	0	0	0	0
TTCGAATGTGTCTCGT	ref_6100_new	0	0	0	0	3	0	2	1	1	1
CGAAATCTCAATCGCC	ref_6100_new	10	29	11	14	24	15	25	12	20	25
TATGCCTCGATGAAGC	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CAGCCCAGATCATTGA	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CCACCGTCTAGTAGTT	alt_6100_new	0	0	0	0	0	0	0	0	0	0
TTCCCGAAGGTATGCC	alt_6100_new	29	42	32	39	51	18	53	23	38	20
CGCGATTATTGTACGT	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CGTTAAGGTGTTGATG	alt_6100_new	26	46	34	25	48	37	61	24	64	29
TGTATAAGGTTTAGTC	alt_6100_new	17	44	30	29	27	15	39	15	40	19
CCTATGTCAAGGCGTA	alt_6100_new	9	16	14	12	18	4	38	12	23	9
CTCTGGTTTCCGTGCC	alt_6100_new	9	8	6	5	18	9	25	7	14	10
CTGGCTTCATAATAGG	alt_6100_new	2	4	1	4	1	0	2	0	3	1
TATATGTAAACTCGGA	alt_6100_new	0	0	0	0	0	0	0	0	0	0
GCTCAGTCGAGATCCA	alt_6100_new	8	12	12	3	12	4	9	5	7	4
GTGTATGTGCACTGTC	alt_6100_new	1	3	2	4	7	2	2	7	2	4
ATTTAAAATACGATCC	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CGTGTTTAGTCCGCAG	alt_6100_new	5	11	6	10	6	6	12	8	4	4
ATTACTGGACAATTGC	alt_6100_new	11	10	8	7	12	7	10	6	11	7
AGTTTCCTCATCACGA	alt_6100_new	22	20	20	22	32	22	33	28	38	29
GATTACCTGCAGCTGG	alt_6100_new	0	0	0	0	0	0	0	0	0	0
GCAGGCAACTCTCTCT	alt_6100_new	0	0	0	0	0	0	0	0	0	0
ACGCTATCGGTCGCGT	alt_6100_new	8	12	3	9	16	6	12	1	16	5
GCCATCACACAACCCT	alt_6100_new	29	23	23	22	27	20	26	17	19	22
TGACGCTTAATACCTT	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CTGCAGTTTTGAGGTA	alt_6100_new	0	0	0	0	0	0	0	0	0	0
TATTATCAAATACTCG	alt_6100_new	1	5	4	5	5	2	4	1	5	4
GTAGATCAGTGTTTTC	alt_6100_new	9	26	29	16	25	14	38	16	45	20
GTAATCGCCGGACCTT	alt_6100_new	67	77	72	61	63	61	79	45	91	41
GCTAAAAAATTCCCTC	alt_6100_new	1	4	2	2	5	0	1	0	4	2
TAGCATGTATCGTCTA	alt_6100_new	30	53	29	28	33	31	54	29	59	27
GTCCGTCGTATCCAAA	alt_6100_new	0	0	0	0	0	0	0	0	0	0
TACTACATTCGGTTCG	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CGTGTTACTCCAGGTA	alt_6100_new	0	0	0	0	0	0	0	0	0	0
TGTTTTTGATGGCCCG	alt_6100_new	40	75	64	66	69	48	95	30	84	45
AGCTGAGCTTCGGATG	alt_6100_new	29	34	29	32	34	33	44	24	56	28
TGACCAGTGGTTGAGG	alt_6100_new	0	0	0	0	0	0	0	0	0	0
GCTACACCTGAAGCGG	alt_6100_new	10	14	16	8	27	10	17	11	21	6
GTCGAGTACTCAACCG	alt_6100_new	28	33	26	29	47	21	42	32	44	26
GTGCCAATTCTTCATC	alt_6100_new	0	0	0	0	0	0	0	0	0	0
CGGAATGTACCGGTAT	alt_6100_new	0	0	0	0	0	0	0	0	0	0
GTCGCATATTCCCTAG	alt_6100_new	0	0	0	0	0	0	0	0	0	0
TTGTGTAAAGCAGATG	alt_6100_new	9	35	13	14	30	14	36	11	26	6
CTCCGATATCTCCGAG	alt_6100_new	17	40	21	22	35	26	38	18	47	16
GCTCTGCCCGCACTTA	alt_6100_new	71	90	80	58	78	53	80	61	92	51
TACGAATTGCGGGGCA	alt_6100_new	2	7	7	0	4	1	7	2	6	1
ATCACTAAGTCGCTAT	alt_6100_new	18	35	25	25	33	26	35	23	43	16
CCGCGCCCTATTTGCC	ref_4201_fdr	3	23	9	11	29	14	24	1	32	5
TAAGTGTCTATTAGGT	ref_4201_fdr	104	69	116	85	93	94	66	86	64	79
CTTGATCTGGATAGTG	ref_4201_fdr	105	72	96	96	91	89	81	84	61	78
TACCGGTCTTGTTTGG	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTGTCTAACCCTA	ref_4201_fdr	9	6	4	4	7	5	5	2	6	10
ACGGATAAGACTCCTG	ref_4201_fdr	39	24	47	29	22	33	27	24	35	28
TACTCGATAAATCCCG	ref_4201_fdr	52	28	69	43	45	63	61	50	54	56
AAGTATCGCTTGGGAA	ref_4201_fdr	50	22	70	34	25	26	34	32	49	31
AATAATCGGGTTGGCT	ref_4201_fdr	95	72	94	96	86	70	90	84	89	83
AGTAATATTCCCGATT	ref_4201_fdr	30	18	30	23	40	29	28	27	29	28
TGTTCGTGAGCAGGGT	ref_4201_fdr	64	34	60	51	36	55	48	49	47	64
ACTGTTGTCTTGTCTC	ref_4201_fdr	36	25	38	44	38	36	15	28	27	34
AGAGCGCCGACCGATA	ref_4201_fdr	18	16	29	19	15	23	26	27	15	20
ACAAGCTCGTATGTTA	ref_4201_fdr	45	29	49	37	35	32	33	32	48	40
ATAAATCGTTCTAAAT	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
CGGGATCATATCTTGA	ref_4201_fdr	676	397	801	594	391	612	399	510	467	581
GGCGTTTGCATATTGG	ref_4201_fdr	140	114	172	118	111	145	120	133	105	130
ATCTAACTATTTAATC	ref_4201_fdr	80	66	93	85	77	83	58	78	63	91
GCAACCATTCTCTCAC	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
TGTTAGCAAGGGACAT	ref_4201_fdr	17	15	15	17	12	16	7	11	11	17
GGTTTTTCGCAAGTAC	ref_4201_fdr	17	11	5	12	17	16	15	14	10	11
CCATAATGTCGGTGAT	ref_4201_fdr	32	35	43	32	31	45	28	47	15	34
GCTTTTTACTTCTCTG	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
TGATCCCGGGTCTTCA	ref_4201_fdr	34	10	28	27	18	25	20	24	12	28
CGTTTAAAGACAGAGC	ref_4201_fdr	81	67	96	60	61	62	65	75	48	73
TGCCTATGGAACGGTT	ref_4201_fdr	53	29	55	44	26	44	44	39	35	34
CGGCCCGAGGATTAGA	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
GCCATTAATTAAGAAG	ref_4201_fdr	4	9	16	5	3	12	12	7	9	6
TGGAGTCCCAGGCCAG	ref_4201_fdr	17	14	25	19	10	18	13	13	11	19
CCTATAAGGGAAAATA	ref_4201_fdr	48	67	86	49	68	64	75	70	55	36
ACCGGCGAGAGTGTTC	ref_4201_fdr	92	79	86	76	64	59	73	93	87	67
ACGGAGGCTTAGCGAG	ref_4201_fdr	222	137	235	150	138	154	97	140	148	181
GCCGTACTCATAATAC	ref_4201_fdr	50	50	77	66	58	56	55	53	49	42
CATTTTCATGGCTCAC	ref_4201_fdr	39	25	41	32	32	46	28	28	26	30
TCTAGCTACAAGTTTA	ref_4201_fdr	15	13	31	16	15	10	13	21	30	9
CTCGGGCGTTCGCGCC	ref_4201_fdr	38	31	48	29	35	26	46	19	43	22
TTGGGGCGTCAACTAT	ref_4201_fdr	35	18	40	19	18	29	29	19	21	23
TATGTGCTTGCAGCAG	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
TGCCCCAAAGACCATC	ref_4201_fdr	28	19	32	24	12	20	25	14	22	18
TCTTGTTGTTGTCCTC	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
GTTAGTTCGTTAGTCT	ref_4201_fdr	10	9	20	10	5	11	3	7	11	13
CCATAGTATGACTATC	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
GGTGGCCCGTGAAGTA	ref_4201_fdr	0	0	0	0	0	0	0	0	0	0
CCCACGCGCGCTTGAA	ref_4201_fdr	58	36	47	45	52	52	49	51	59	52
CCGTCTCGCCAGCAAA	ref_4201_fdr	4	2	3	2	2	3	2	4	6	5
ACTGCTGTTTCAAGTG	ref_5847_new	39	48	33	40	50	25	67	35	54	35
TCGGAATTTAACTTTA	ref_5847_new	9	27	14	14	29	11	21	11	33	12
ATGGCCAAATGGTTTC	ref_5847_new	9	14	8	8	13	9	28	10	9	4
AAGGCATCACACGAGT	ref_5847_new	2	12	5	2	2	3	3	1	3	1
AATCCTTCGTCAAAGG	ref_5847_new	1	2	5	1	1	3	0	1	3	3
GCTACCCTCTCATCCT	ref_5847_new	3	2	3	0	1	1	2	1	5	6
CTTACTTCTCGAGGAA	ref_5847_new	17	26	17	10	27	15	24	10	25	21
AGGCTTCGTCCGGTCA	ref_5847_new	256	369	318	266	415	250	406	249	408	243
ATAGTGGGGTATACTA	ref_5847_new	24	30	29	30	38	32	39	22	60	16
GTTGATAGCGCAGCAA	ref_5847_new	72	113	89	69	135	65	138	67	148	63
CCTCCTATGGTGTTTA	ref_5847_new	5	15	10	7	18	12	26	9	15	13
TAGCATCTGAATGCTG	ref_5847_new	10	17	19	14	16	6	15	11	29	7
GTCCGGCGCGAATTCT	ref_5847_new	0	0	0	0	0	0	0	0	0	0
AGGCTTGTGTGTCTTT	ref_5847_new	3	8	6	5	6	4	9	2	8	6
GGCGCTGCCACCGGCA	ref_5847_new	0	2	5	1	1	1	1	0	4	1
ATGTTCTAGCAGTGGC	ref_5847_new	18	22	14	12	12	11	19	9	14	17
GGTTAGTGGGGTTTAC	ref_5847_new	0	0	0	0	0	0	0	0	0	0
ATTATAACCAGTGTTC	ref_5847_new	0	0	0	0	0	0	0	0	0	0
CGCGAACCGAGTTGAT	ref_5847_new	40	45	49	43	68	35	45	39	64	42
CATCTCATACGTCATT	ref_5847_new	0	0	0	0	0	0	0	0	0	0
TTATGGACCCGCATTC	ref_5847_new	21	26	26	19	13	22	15	17	17	15
TAGAGCTAGGGATGTG	ref_5847_new	0	5	1	1	7	1	5	1	0	1
AGTGTTTCTGAGCTGG	ref_5847_new	42	108	68	60	93	64	99	64	122	55
GATCTCCGTCGCGTTA	ref_5847_new	0	0	0	0	0	0	0	0	0	0
GGGCATCCCGGTTGTT	ref_5847_new	14	12	17	11	17	14	13	20	15	3
CCCGCTATCTTGATTT	ref_5847_new	0	0	0	0	0	0	0	0	0	0
CAATACGGTGCCTGCC	ref_5847_new	6	15	12	9	18	11	25	4	16	6
TAGCTGTTCAGACCCT	ref_5847_new	59	93	62	48	77	61	71	52	98	49
GGACTTTTTAAGCCAA	ref_5847_new	44	44	27	31	44	44	39	30	51	40
ACCGCCCCCTGGTGTA	ref_5847_new	0	0	0	0	0	0	0	0	0	0
CTCTCAGGGAAATGGA	ref_5847_new	0	0	0	0	0	0	0	0	0	0
GGATGTTCCTCTATGC	ref_5847_new	17	21	20	21	35	22	22	17	33	25
ACTCCGTCCCACCCTT	ref_5847_new	2	9	3	3	7	6	5	5	3	3
CATCTCTGCTGCCTTC	ref_5847_new	6	18	7	5	15	13	14	8	20	6
TACGCTTTTCGGTTAC	ref_5847_new	11	17	11	12	22	13	20	8	27	13
ACCTATACAGAGGTCT	ref_5847_new	81	135	77	62	143	65	142	84	157	71
GACTCTCTCATGGGAG	ref_5847_new	22	63	36	30	49	42	64	36	70	30
ATTTGGGTCGCTGCCC	ref_5847_new	0	0	0	0	0	0	0	0	0	0
TTATCATTATGCACTG	ref_5847_new	33	47	39	36	37	18	43	29	44	26
CTCTGGTAGGCCGCAG	ref_5847_new	0	0	0	0	0	0	0	0	0	0
GTGATGTTATAAACTT	ref_5847_new	31	31	20	23	44	21	44	27	41	20
GTTCTGGTATAGACAT	ref_5847_new	9	12	9	6	13	10	12	10	18	10
CAACTCAATAGTGGAG	ref_5847_new	39	41	29	29	52	32	53	29	52	23
TGTCTAGGGCGCGCTC	ref_5847_new	6	13	8	9	15	8	10	4	13	11
TTTCTCTTCTCCATAG	ref_5847_new	17	17	21	18	18	17	25	13	19	12
GATTCCCTCTAAGGGG	ref_5847_new	96	143	95	77	155	81	148	87	164	91
CCCCCCTTCAAGGATC	ref_5847_new	28	121	24	15	90	16	116	19	112	19
GCGGTCGCCGATCATC	ref_5847_new	0	0	0	0	0	0	0	0	0	0
CCAATGTCTTACCTCT	ref_5847_new	0	0	0	0	0	0	0	0	0	0
ACGAAGTATCCCCCGG	ref_5847_new	32	51	44	26	38	24	75	31	51	37
ATGATGTTATTATGAC	ref_5847_new	44	87	63	54	79	50	73	44	103	58
CGTGGCTGGACTCGAG	ref_5847_new	26	32	22	18	36	19	38	23	36	22
GTATAAATTTGGTTAT	ref_5847_new	0	0	0	0	0	0	0	0	0	0
TTCATGTTCGCATAGC	ref_5847_new	0	0	0	0	0	0	0	0	0	0
ATACAGCTACCTTGGC	ref_5847_new	46	40	48	56	48	27	49	21	49	24
GGGAATCGGGGGGGAC	ref_5847_new	26	50	27	34	42	33	46	32	46	26
TCTCGACTCAGTTTTG	ref_5847_new	18	6	10	14	11	12	11	12	14	10
ACAGAGCAGTCCGCTA	ref_5847_new	72	102	103	67	107	67	96	56	101	87
ATCAGCCTTTTTTAGG	ref_5847_new	18	15	15	27	30	15	26	7	34	21
TAATACAACCGACTAT	ref_5847_new	15	16	22	9	18	17	22	17	15	14
TATCATTGTCTGACGC	ref_5847_new	0	0	0	0	0	0	0	0	0	0
CTTAGCGGAGGCTTTT	ref_5847_new	52	94	61	53	74	47	103	55	87	49
TTCCGGATGCTATCAC	ref_5847_new	71	117	69	61	97	60	85	58	100	48
TTTCGAACACACTAAC	ref_5847_new	0	0	0	0	0	0	0	0	0	0
CTAGGCTGAAGGTCTA	ref_5847_new	7	11	3	10	11	5	7	5	16	5
TTTTCCTCCATAAATT	alt_378_RC	0	0	0	0	0	0	0	0	0	0
TCAGCTGCTACTCTCT	alt_378_RC	104	95	162	110	117	117	80	137	97	86
CTATTCATTCGGTCTT	alt_378_RC	90	49	127	109	47	101	53	104	61	71
TCGGGGTGACAAGAGT	alt_378_RC	22	12	13	15	9	17	13	19	15	16
ACTGTTGTCTTAATTT	alt_378_RC	12	11	17	13	6	13	7	7	8	13
GGCTTGAAACATTCTG	alt_378_RC	33	23	57	51	21	30	23	35	27	36
TCCCTTTGCAGGTTGG	alt_378_RC	56	32	54	66	20	44	35	39	24	49
TTATATACCGTCGTGC	alt_378_RC	34	14	49	39	30	38	20	37	18	41
CGATCGTGTGAATTCG	alt_378_RC	8	12	7	7	3	5	13	6	8	5
GACCCCAATTGCAATC	alt_378_RC	35	20	72	57	22	50	28	45	34	42
ATGGTGATGGCGACGG	alt_378_RC	0	0	0	0	0	0	0	0	0	0
ATTGTTTACTTTGCTG	alt_378_RC	51	37	47	38	31	40	29	48	36	30
CGTCCTTGTGACTCCA	alt_378_RC	51	30	87	69	28	61	24	64	47	57
ATTACCTGCCGTAGCC	alt_378_RC	36	35	60	51	29	43	17	30	26	36
CTTACAGATCCTACTG	alt_378_RC	127	71	158	123	71	107	75	101	83	114
AACTGACACATAAGGA	alt_378_RC	21	9	20	23	7	20	9	21	26	18
ATACAGTTCGCAATCA	alt_378_RC	0	0	0	0	0	0	0	0	0	0
TGCCTATACGGACATA	alt_378_RC	61	38	70	61	38	54	31	55	31	41
GGTACTCCGAATCCAG	alt_378_RC	17	10	18	16	8	18	26	22	22	23
ATCTCAGTTACGCAGC	alt_378_RC	12	13	19	10	10	16	13	14	12	17
TCTAACCTGAGCGCTT	alt_378_RC	19	12	18	26	14	24	12	24	22	18
GAGGAAGGTCCGAATG	alt_378_RC	106	74	118	104	57	98	62	88	64	105
TCGTGTCAGCGAAAAT	alt_378_RC	309	212	380	305	157	305	185	271	208	238
GGCACGGTATGGGATT	alt_378_RC	135	57	165	159	89	111	82	133	70	136
CCCCTTGGACTGAGCC	alt_378_RC	537	345	658	641	361	541	364	517	355	480
TCGTGCTAGAATAAAC	alt_378_RC	15	2	6	10	3	9	5	5	5	6
CGTCGTCAACTTCGCA	alt_378_RC	153	84	153	151	77	113	76	120	87	116
CAATGAATGAAACAGG	alt_378_RC	0	0	0	0	0	0	0	0	0	0
TTCCAGATTCTGCTTA	alt_378_RC	0	0	0	0	0	0	0	0	0	0
GAGCTCAAACGTGTTT	alt_378_RC	221	131	299	212	125	203	147	214	148	189
CGTGATGACGCGCGTC	alt_378_RC	0	0	0	0	0	0	0	0	0	0
TCTCGCTGGGACTCAC	alt_378_RC	33	20	36	48	25	33	38	21	30	32
AGGACCCGGACAGGCT	alt_378_RC	0	0	0	0	0	0	0	0	0	0
CGTGGAGGTGACGTAA	alt_378_RC	61	21	92	73	24	73	36	85	26	78
GCTTCCGGTGACACGA	ref_5734_new	21	35	30	28	39	32	38	21	34	20
ACATCTAGTTCGGCGA	ref_5734_new	0	0	0	0	0	0	0	0	0	0
CTTTGGCGCGACGTCC	ref_5734_new	0	0	0	0	0	0	0	0	0	0
CCGATATGGTCTAGCT	ref_5734_new	14	12	20	13	19	14	17	18	25	6
GGGGCTATCACACTGT	ref_5734_new	7	18	15	17	9	14	26	13	27	12
GTCGCCATGCCGTGAC	ref_5734_new	3	5	6	7	2	2	9	2	4	7
CGTAGTGATGGTTATA	ref_5734_new	5	6	6	3	3	4	5	2	7	3
CTTGCTCTAAAGGTCC	ref_5734_new	3	6	4	2	14	5	9	2	2	3
TATTGGCGGAATACGA	ref_5734_new	8	12	17	10	16	13	9	7	15	10
AACCCATTTCCGTTTG	ref_5734_new	5	11	12	3	15	10	12	5	15	15
TTCTTCTTACCTTTCC	ref_5734_new	8	40	16	20	37	13	48	16	46	14
ATTCGAGCGTACTGAT	ref_5734_new	22	53	28	32	56	33	48	17	36	38
CACACACGGTTGAGAG	ref_5734_new	60	92	66	60	86	47	102	45	81	52
GAGTACCCCAAGTCCC	ref_5734_new	12	8	10	11	23	8	10	11	13	8
GCAGCTAATTAGTGGT	ref_5734_new	9	13	23	23	24	17	27	13	23	8
TCTGTTAATCGGTCTA	ref_5734_new	13	27	21	13	30	15	23	18	36	15
ACTAATGGGATCTTAA	ref_5734_new	0	0	0	0	0	0	0	0	0	0
AATAGGTAACAAGGGT	ref_5734_new	109	124	121	99	154	86	140	97	138	97
GGCATGGCCCAAACGG	ref_5734_new	18	23	24	22	41	20	33	25	39	19
ATTGTAGGCCCGATTG	ref_5734_new	6	9	9	1	8	4	7	5	5	4
GGAAAGGTGCTCGCCA	ref_5734_new	7	15	10	8	10	5	9	8	12	4
CATGGCGAGATGTTTC	ref_5734_new	49	61	45	45	49	36	64	40	57	35
CACTCTTCAAAACTTG	ref_5734_new	11	15	7	8	13	7	13	12	16	9
GTAGCACTACTACAGG	ref_5734_new	7	7	4	7	10	3	5	3	8	1
AATAGGAGTAAATGCC	ref_5734_new	0	0	0	0	0	0	0	0	0	0
AAACTATTCCCGGTGT	ref_5734_new	86	138	79	80	150	76	117	84	148	87
GTAAGCGCTCTTATAG	ref_5734_new	24	19	11	15	24	16	17	11	23	13
TGTTAGTTAGTATTAG	ref_5734_new	7	18	23	7	13	12	20	7	19	7
ATCGTCATCTAGACAC	ref_5734_new	0	0	0	0	0	0	0	0	0	0
TAAATTACTGCTAGAG	ref_5734_new	32	39	34	33	39	33	45	26	56	26
AAGGATTCGCTACCGA	ref_5734_new	25	39	24	21	26	20	34	17	46	26
TTCAAGATCAAGTTAT	ref_5734_new	13	16	21	20	34	4	20	13	15	16
CGCGCCTGTCGTTGGT	ref_5734_new	27	38	28	25	40	11	37	30	50	23
CTCGAGTGCTCGGTCT	ref_5734_new	12	13	15	17	14	14	14	8	19	12
TATCGGACAGTTTCTG	ref_5734_new	37	54	39	27	47	37	53	31	54	36
TCATAAATCAGTTCGG	ref_5734_new	0	0	0	0	0	0	0	0	0	0
CCACCGATACCCTATC	ref_5734_new	4	3	5	2	10	2	1	3	9	3
AAGTTTTCACGTACTT	ref_5734_new	46	52	49	32	59	33	66	25	65	24
CTTGTTGTACATGTGT	ref_5734_new	27	47	33	19	41	15	45	29	41	19
GCCGGGACGACCCCTG	ref_5734_new	11	13	14	15	16	8	16	15	13	10
CATTATGTATTAGCTA	ref_5734_new	25	41	25	34	49	31	40	20	45	31
GTAGGCGCTCTGAATA	alt_6008_new	76	101	88	89	93	60	90	73	82	49
CCACGGCCTGTCGATA	alt_6008_new	3	6	5	7	6	6	3	6	6	4
GTTCTCACCCATACTG	alt_6008_new	0	0	0	0	0	0	1	1	1	0
ATTAACTTCCGGCCAA	alt_6008_new	4	6	3	2	6	2	6	3	4	2
TTGATTGCCGATTCGT	alt_6008_new	3	3	5	4	6	5	3	3	3	3
GTTCTATACGCCTGGC	alt_6008_new	3	4	7	1	8	5	2	11	3	2
TGAGGTGATATCGTAC	alt_6008_new	44	28	28	32	42	20	25	36	26	46
TTTTTCAAGTTGGGGC	alt_6008_new	16	9	15	10	14	8	11	11	16	7
TCTTTCGGAGTTGACT	alt_6008_new	8	27	3	13	15	20	14	1	13	7
CTCCAGCGAACGTTAT	alt_6008_new	32	37	43	38	49	17	29	34	51	26
CCTTCCGGGTGTGAAC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TAACGGTTTTGGAGAA	alt_6008_new	0	0	0	0	0	0	0	0	0	0
AATATCCCCTTCCGTC	alt_6008_new	52	72	62	40	72	40	62	56	90	31
TGTACCTCCTGGTTCG	alt_6008_new	52	63	54	42	74	45	58	39	90	37
CCTGGGTACTTATGCT	alt_6008_new	38	50	33	36	35	22	36	26	38	30
TTTCTACGTCCCAAGG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
ATTAAACCAACCTTCT	alt_6008_new	121	120	131	107	160	100	136	103	149	116
CCGACCAAATTTAGTG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
GTTGGGGCTGGCTTTT	alt_6008_new	64	93	72	62	84	83	99	61	76	74
AGGTCCAGCAGGAGGC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
AAAGTGCTTCAGGGAT	alt_6008_new	0	0	0	0	0	0	0	0	0	0
CTGTATGGGGGTGATG	alt_6008_new	116	126	140	126	160	93	146	97	176	106
TGGTGGTCCTGCTCAT	alt_6008_new	32	26	40	22	31	28	41	19	40	18
CTGGAACCTTACTCAC	alt_6008_new	2	11	3	6	14	10	7	3	11	9
CACAATACCGATTCTC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TGTTGCATGCATACTT	alt_6008_new	65	98	69	65	60	71	133	50	97	56
ACATGTCTTGCCTACA	alt_6008_new	70	84	78	57	83	42	84	63	101	52
TGCCTTCCCTTAAACA	alt_6008_new	27	22	30	18	29	28	34	21	30	17
TCTGTAACCTTGAGCG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TCAGTATTACTGCCTC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TAATTCTCCTAGTTGT	alt_6008_new	5	11	7	7	11	9	16	6	11	10
GCAACCATTAATTCTC	alt_6008_new	8	4	8	8	12	10	7	7	13	6
ATTCGTTTGACCTCTT	alt_6008_new	21	22	25	25	27	14	25	14	24	17
CGTTGCTCGCTCGGTT	alt_6008_new	120	153	147	135	157	122	175	133	208	108
TTAGTGAGCGCAACAA	alt_6008_new	0	0	0	0	0	0	0	0	0	0
CCGTTTCTGCCAGCGT	alt_6008_new	33	41	33	28	43	27	37	19	41	27
ATTCGTCTATCCGTCC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
AATCTTCATGCACCAT	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TCGGTGCGTCATTCCT	alt_6008_new	20	26	23	24	37	16	24	26	44	21
GTTTAGGACCCATGTC	alt_6008_new	14	16	29	14	20	15	35	14	25	23
ACCAATGTGATTGACC	alt_6008_new	30	46	36	18	55	27	37	20	36	29
CTTAAATCATTTTGTT	alt_6008_new	45	55	71	51	54	38	48	37	52	45
AAACGTTACTCATGGT	alt_6008_new	28	44	41	31	24	35	27	14	34	31
TCGTGCGAAGAGGAGT	alt_6008_new	0	0	0	0	0	0	0	0	0	0
CACGGACTTTGTACCC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
GATAGTGGCCTTGTTA	alt_6008_new	20	13	11	7	17	13	27	8	18	11
CCGTGCGTCAGGCGTT	alt_6008_new	32	30	46	24	27	34	30	26	25	20
TTCAGATTCAGTCGCG	alt_6008_new	18	24	20	29	20	23	28	15	28	14
GCTTCTCCTAATGTGT	alt_6008_new	47	66	62	55	61	42	49	37	66	52
CTGGCCGCTGTGAGCA	alt_6008_new	24	23	32	17	35	21	36	22	44	27
TGGCGCAGTTTAGATT	alt_6008_new	28	30	30	26	34	25	36	21	40	22
GGCGGAATGCCACCGA	alt_6008_new	10	14	32	20	18	17	15	11	18	13
GCCACCACTGACAACG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
ATGTTGCCCTGGCAGC	alt_6008_new	12	12	7	14	16	11	18	9	13	10
TAGAGGAGCGTATTTT	alt_6008_new	18	28	26	20	24	25	32	19	29	31
CAGCATCCGGATCGTG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TATATGCACCGATCCC	alt_6008_new	11	10	9	10	11	6	4	9	9	9
CGTCATAGGTTTCGTT	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TGGGTCTCAGGGTTCT	alt_6008_new	8	22	13	15	15	10	16	16	19	10
CTATCTTTATATGTTC	alt_6008_new	47	52	66	63	39	55	61	34	63	42
CCTATGAAAAATGGAT	alt_6008_new	8	29	17	6	26	7	30	20	16	7
ACGACTCACTCGGTGT	alt_6008_new	17	21	17	14	11	12	18	17	21	13
TTCGACATGCACGCGC	alt_6008_new	17	22	26	21	42	31	52	18	24	31
TTTTCTCCGGATTATA	alt_6008_new	24	22	17	21	14	21	27	21	17	22
GTTTCAGATCTACCTC	alt_6008_new	20	36	23	16	22	21	25	18	17	19
CTTGCAGTTCCGTGTG	alt_6008_new	84	98	92	71	117	76	119	60	107	75
CTCCGGTCTTTTGGAC	alt_6008_new	27	96	23	25	75	21	76	24	60	25
GACACAAGAACCGTGT	alt_6008_new	1	0	0	0	3	0	1	0	3	0
TTCCAAGGTCTCGGCC	alt_6008_new	16	8	10	11	13	15	10	15	13	14
CGTTTGTCCATCTTAC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TTATCTCTTCTGCTGG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
GTCCGGGTCGGTCTTT	alt_6008_new	19	39	31	15	40	21	29	20	23	15
GGCCAGTTCGGTTAGC	alt_6008_new	209	250	278	239	269	185	276	224	281	196
GTGGGCGGGTGGAGAA	alt_6008_new	14	20	20	16	17	24	22	16	21	21
TGCTGTATCCTTCCAT	alt_6008_new	66	74	80	75	81	59	59	56	88	60
TATTAAGTCAGGTCGT	alt_6008_new	14	32	36	29	21	34	26	28	42	26
ATGAATTTCGGTGCTA	alt_6008_new	16	19	27	16	24	18	33	14	27	19
ATGTGCAGTGTCTCTA	alt_6008_new	51	71	74	63	58	40	71	37	69	43
TCCTGATTCACATGGG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
GCTTCGGCTCTTGATC	alt_6008_new	0	0	0	0	0	0	0	0	0	0
CAATGTGGTGTCTTCC	alt_6008_new	17	12	18	9	9	10	10	12	17	11
TTGAGGAACCTCAGCC	alt_6008_new	26	37	48	33	50	28	38	33	46	29
GGCGGGACTTCGTGCC	alt_6008_new	17	21	26	24	17	16	27	24	23	14
ACAAAATACTGCATCG	alt_6008_new	1	2	2	0	2	6	2	1	1	0
TGTAAGTCTCAGATAC	alt_6008_new	51	71	72	50	75	52	88	57	59	50
TCTAGCCGGTGCAATG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
GGTCTTCTAAGCGCTC	alt_6008_new	0	6	1	3	5	3	3	1	0	0
GAGGTAGTGGAATTCT	alt_6008_new	0	0	0	0	0	0	0	0	0	0
TGGCATCTTATTTCGG	alt_6008_new	0	0	0	0	0	0	0	0	0	0
GTATTCCGAGAGCCCA	alt_6008_new	42	56	42	35	42	25	40	34	57	48
TTCGCTGCATCCCTTT	alt_6008_new	9	15	12	5	23	17	18	10	13	3
TAGGTGTGGTAGCTTT	alt_6008_new	0	0	0	0	0	0	0	0	0	0
CCACGTAAGGGCGCCT	ref_3673_fdr	25	41	34	28	33	16	27	31	33	21
GAGGCTATCTTCCCTC	ref_3673_fdr	27	20	19	22	14	20	16	15	22	20
TGCATGTACTTTTGGG	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GTTACTGGTAAATTCA	ref_3673_fdr	12	7	12	4	12	7	4	11	6	9
CTACGCGCGGGCATAG	ref_3673_fdr	144	125	199	151	122	165	141	158	129	153
CACACCACATCATTGC	ref_3673_fdr	84	65	84	86	70	63	79	64	72	62
GCACAGCTAGGTTTAA	ref_3673_fdr	9	13	14	20	20	18	17	14	16	16
TTGGATTCCCTGCCTA	ref_3673_fdr	70	60	75	57	50	56	73	54	69	60
GCGTATAAACGACGTC	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTTGCACTTCGTG	ref_3673_fdr	124	124	167	132	130	100	119	106	108	132
TAGATTCATCCTCATC	ref_3673_fdr	205	177	250	234	143	191	194	166	206	177
CATTTTGATCCACTCC	ref_3673_fdr	249	190	301	217	199	231	180	227	212	196
AAGGTCTGTACCGGCC	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
ATCCCTAGGTTTAAGT	ref_3673_fdr	9	2	9	9	11	12	3	8	4	8
TTGTGTGCTTAAGTCT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
CGTTCCAGGGAAAACT	ref_3673_fdr	7	4	6	6	9	3	6	6	5	3
TGACCAGCTGTCGCGT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
ATGTACACCGTTGCTA	ref_3673_fdr	29	23	27	31	19	20	21	20	21	25
CGTATACCGGTTGATC	ref_3673_fdr	26	26	34	37	23	23	27	23	42	28
AGAAATACAGTCCAGG	ref_3673_fdr	12	11	10	9	8	18	8	6	6	7
TTGGTCCCAGCGTCTG	ref_3673_fdr	101	89	81	80	80	77	84	91	71	66
CCAGAGATGCTTGCTT	ref_3673_fdr	16	34	29	24	50	26	53	30	56	27
GAACATATCATTAACC	ref_3673_fdr	12	12	21	18	8	15	8	18	13	14
ATATTTGGTATCGCTC	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GCTTTCCCTCTACAAT	ref_3673_fdr	244	215	295	275	190	241	246	225	237	208
TGGGTATTTTAATTGT	ref_3673_fdr	0	0	1	0	2	2	1	2	0	1
CCCCTTCGCTTGGTGC	ref_3673_fdr	3	36	10	9	33	4	31	4	37	5
GCTCCGTCTCTTGTAC	ref_3673_fdr	10	12	15	11	14	9	16	13	9	12
CGTATCTGCTGCAAGA	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GGTGCCCACCCCTTAG	ref_3673_fdr	2	9	6	10	7	5	6	5	6	2
AAGATAACGCGGTATC	ref_3673_fdr	20	16	36	22	13	17	29	18	17	12
ACATGTTCAATCTATA	ref_3673_fdr	27	34	56	51	37	44	58	54	36	56
AGCGTCACATATTTTC	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GGCCAATACGCGCTAA	ref_3673_fdr	101	76	129	112	83	93	87	72	89	66
CATTCGCACATAGATA	ref_3673_fdr	33	19	26	37	21	20	17	37	24	15
GGTTAAATTGTAGAGC	ref_3673_fdr	10	13	5	10	7	15	13	11	8	5
ACCCAGAGACGCGATC	ref_3673_fdr	119	103	159	149	118	130	102	103	132	125
TGTCTTTGTACTATTT	ref_3673_fdr	30	26	35	30	28	23	28	19	22	23
CCATGCATCCATTTTC	ref_3673_fdr	48	36	35	40	30	33	27	27	32	33
ATAGTTATCCCCAACC	ref_3673_fdr	47	59	62	52	41	55	46	55	62	62
AGATTTCGGCTACCCG	ref_3673_fdr	41	28	43	34	23	36	49	33	38	32
GGATTTGTTGGCTTTC	ref_3673_fdr	113	92	114	115	95	97	94	112	76	84
GTAGCGATCGTCCATT	ref_3673_fdr	44	37	48	60	44	53	45	52	51	39
TACCAGTGTTACAAAC	ref_3673_fdr	7	18	12	8	13	10	9	15	11	15
GGAGCTACAAGGCCTT	ref_3673_fdr	52	44	93	68	40	90	60	80	64	69
TGTGCCCGTTTGTTAC	ref_3673_fdr	87	73	96	111	91	98	97	96	94	76
AAGTTCTGCGTTTCAA	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
TGACACCAAATCGTAT	ref_3673_fdr	4	4	2	8	7	2	6	2	3	5
GAGAATTATGTTTGCG	ref_3673_fdr	13	13	27	19	14	13	21	21	13	11
TTTATTAGCCTTGTAT	ref_3673_fdr	204	151	232	181	113	212	186	144	184	153
TATAGGCCTCTCATCG	ref_3673_fdr	69	45	82	70	54	70	70	63	72	69
AGACCTATAAAACTAC	ref_3673_fdr	12	5	23	7	16	7	13	12	11	13
TTCTCGATCGTACATA	ref_3673_fdr	55	42	75	64	52	63	56	58	58	45
TTAGGTACCGTGGTCC	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
AGATGGACTTGTGATT	ref_3673_fdr	61	64	68	59	50	51	65	57	81	57
GGGTAGGGATTTTAGA	ref_3673_fdr	22	20	24	28	20	22	24	32	19	25
TGGTCCAAGGAACGCC	ref_3673_fdr	78	63	84	73	75	69	44	67	57	52
CGGCGACAGGCTGGGT	ref_3673_fdr	42	83	45	42	89	32	75	37	96	45
GAGCTCAACTAAGCGG	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GCATAGGTTTATTACG	ref_3673_fdr	46	43	58	67	53	50	51	52	37	48
TGACCCGGCGGAGCCA	ref_3673_fdr	112	86	124	125	114	89	98	116	117	105
GACACGTTCATCTTAA	ref_3673_fdr	15	14	21	16	12	19	11	27	11	18
ACGACACAGCGTGTTG	ref_3673_fdr	4	1	10	4	2	1	7	8	7	1
GCAGTTCGTACATACT	ref_3673_fdr	18	21	37	33	32	28	18	23	23	26
TCTGACAGGTGATATA	ref_3673_fdr	13	5	9	4	12	5	9	6	6	5
AGATTGCCGTAAAGGT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
ATTCTGCTGATGAAAA	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
TTGCGCTCGGTGCTCT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
CGCTACTGAGTGGCTG	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
ACAGCGGCGCCACATG	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
TGTAATACGGTACGTT	ref_3673_fdr	55	31	41	57	35	40	39	44	35	43
TATGCCGAAACCTTGC	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GGTATATCTGCCTCCT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GCCCTTCATCAGTTGG	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGCTTCGTCGACC	ref_3673_fdr	10	36	26	9	30	12	30	9	31	14
CGCGCCTTGCTGCTTG	ref_3673_fdr	2	2	3	0	0	0	3	2	7	0
GCCCAGACCGCCTTGA	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTATTAAACTCA	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GGACGTCAGCTCGGTT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
TACTGACGTAGAGCCG	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
ACCGACTGTTGGGCTC	ref_3673_fdr	29	30	39	27	36	22	33	27	53	25
CCCAGACTTGCGGCGT	ref_3673_fdr	8	8	11	8	5	6	12	7	6	9
AGTTGTATTTGTTCAA	ref_3673_fdr	28	30	32	29	28	27	18	39	21	38
CGATACGGGAATTCGG	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGACTGTTTCTAG	ref_3673_fdr	41	27	26	26	22	22	30	21	15	18
TAATGTAGAGATTCGT	ref_3673_fdr	83	73	98	102	74	81	99	92	97	88
TCTGCAATCTTGAGTT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
CAGAGATGGAGCATGT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTGAGTTCATCCT	ref_3673_fdr	24	17	26	23	13	22	17	14	14	24
ACTGCTTCCATGTCAT	ref_3673_fdr	30	22	38	37	26	36	29	27	35	33
TCCTCTGTATCGGTGC	ref_3673_fdr	78	50	92	85	70	83	63	67	69	70
TCGTGCTTGGTGGCGT	ref_3673_fdr	7	10	13	14	4	16	10	21	9	14
AACATATTTAGGGAAC	ref_3673_fdr	36	19	51	38	38	37	30	27	36	35
GCACTAAGTTCGATAC	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GGCATCGATGTTTAGC	ref_3673_fdr	7	9	7	7	7	12	9	6	14	9
GTTACTTGTATGAGAG	ref_3673_fdr	72	54	65	61	60	46	42	37	60	42
TATTTCTGCAATTACT	ref_3673_fdr	84	93	115	106	77	78	87	93	96	92
TAGGGCCTACCTCAGG	ref_3673_fdr	63	85	70	81	110	57	79	70	113	58
TCGGGCGTGCGGCTGA	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
AGCTCATGCATTTATT	ref_3673_fdr	0	0	0	0	0	0	0	0	0	0
GCTGTCTTTAAGGTTG	ref_5696_new	71	55	95	93	62	80	83	101	67	79
CCTCCCGTTCGTTCCC	ref_5696_new	12	20	13	14	7	10	11	16	7	13
GCTACGGGTTTTTTTT	ref_5696_new	16	20	13	16	10	17	8	8	7	14
GTATAACATTTGGCTC	ref_5696_new	0	0	0	0	0	0	0	0	0	0
GGCTCCCTAGATGGAA	ref_5696_new	0	0	0	0	0	0	0	0	0	0
GATTTGGCATTCCAAT	ref_5696_new	42	27	60	45	31	52	42	52	44	38
CTAGTCTTTCAGTGTG	ref_5696_new	13	6	3	6	3	13	8	3	9	12
CATCAGGCCCGAGAAG	ref_5696_new	43	37	39	39	29	29	28	28	22	27
CTGCCTGAGTCAGTTG	ref_5696_new	41	29	31	44	32	37	33	27	42	39
GCTGGGGGAGCGCGTG	ref_5696_new	28	24	44	37	19	34	18	18	12	21
TTAGAGCACAAGCAAA	ref_5696_new	0	0	0	0	0	0	0	0	0	0
CATCGGCTCATTCCCA	ref_5696_new	48	25	51	50	35	52	38	34	34	40
CGTGTTTCTACGTGAT	ref_5696_new	7	8	20	8	5	10	17	13	4	6
GTGAACTCACGCGTGT	ref_5696_new	0	0	0	0	0	0	0	0	0	0
TAGCACTTCAGCGATC	ref_5696_new	14	13	18	16	5	11	11	20	10	8
AGACGCCTAGGTGCTC	ref_5696_new	34	35	67	42	31	43	38	33	24	44
TGAATCATTGTATCTC	ref_5696_new	0	0	0	0	0	0	0	0	0	0
AGAACTTGACTGGCTC	ref_5696_new	0	0	0	0	0	0	0	0	0	0
TTGGAATAAATTCGTC	ref_5696_new	0	0	0	0	0	0	0	0	0	0
ATTTTGTGGCATTCTT	ref_5696_new	438	219	529	461	248	388	225	391	249	334
TGATCAGATGCGATTG	ref_5696_new	49	23	56	57	25	43	34	40	34	42
AGAACTTGACTGGCTA	ref_5696_new	0	0	0	0	0	0	0	0	0	0
TCGTTAATTGTCGCGG	ref_5696_new	0	0	0	0	0	0	0	0	0	0
GTGCTCCCAAAGGTCA	ref_5696_new	83	65	109	109	63	90	59	95	67	87
CGCTTTTCATGCATTA	ref_5696_new	47	41	65	50	24	38	31	56	42	54
CTTCGTCGTCGGCAGG	ref_5696_new	71	54	105	102	49	69	65	85	56	74
CCTCTTGTCGTATGCA	ref_5696_new	69	61	93	60	55	69	48	70	62	67
TACCCCAACGCCAGGG	ref_5696_new	0	0	0	0	0	0	0	0	0	0
TGGTCCCCGGACCGAT	ref_5696_new	34	29	56	56	39	51	56	54	45	41
CAGGGATCCAGAGCTC	ref_5696_new	0	0	0	0	0	0	0	0	0	0
CCAGGCGTTCTTACCA	ref_5696_new	37	32	54	40	41	37	45	36	47	30
TTGTCCCAGGACCAAA	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
TGCGATCAGGAGACAT	ref_4857_missing	10	16	12	7	8	6	15	7	9	4
GCAAAATATCGTATGA	ref_4857_missing	10	18	7	5	11	11	15	6	18	9
CTAATTCTTGTAGCAT	ref_4857_missing	2	2	3	6	1	3	4	2	10	6
TACTATCCTGCTACCT	ref_4857_missing	8	34	32	12	39	14	40	12	34	15
ATCTTATTACAGTTGT	ref_4857_missing	1	5	1	0	2	3	3	3	3	1
GATTTCAGGGCACGGT	ref_4857_missing	3	9	3	5	9	3	12	4	6	6
CAGGGGCTGGTCAAGT	ref_4857_missing	7	9	7	5	12	3	12	1	12	1
GGTTTCTTTCACGCCC	ref_4857_missing	0	10	1	2	11	1	8	1	9	0
ACCTCGTAAATGACCT	ref_4857_missing	3	9	1	7	10	5	16	3	10	5
TTCTCGAATGTCTTAC	ref_4857_missing	16	28	14	12	20	12	29	10	27	18
TTGTACTTGCAAGTTT	ref_4857_missing	2	3	5	0	5	1	3	3	7	0
TTTCTCATCTTGCTGT	ref_4857_missing	10	9	11	2	23	3	19	6	17	13
ATTGGCTACGCAGTTT	ref_4857_missing	10	24	7	8	29	13	24	7	29	9
TACTCACGCCTAAGAG	ref_4857_missing	4	15	2	5	20	0	17	2	18	3
AGCCAAGTAAGATATC	ref_4857_missing	0	2	3	0	2	0	1	0	0	0
TAGTACTCCGGGATAG	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTTAGTTGAGGG	ref_4857_missing	1	2	3	1	0	1	3	1	8	0
CGCAGGTATATCAACA	ref_4857_missing	4	5	2	3	7	3	11	2	5	2
TTTTGTAGTGTTGCTT	ref_4857_missing	0	7	2	2	7	0	7	2	1	4
CTTCAAAGTCACTCCA	ref_4857_missing	12	37	19	20	59	25	57	17	65	15
TTATGGTAAACAAAGC	ref_4857_missing	7	8	13	4	11	5	15	7	14	3
AGTCTACACTGCCTCC	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
GAAGTCATCGAGATTC	ref_4857_missing	8	6	2	5	11	3	13	8	9	7
GAAGATATGGAACCAA	ref_4857_missing	1	1	0	0	1	1	1	3	1	0
ATAATGTAAGCTTGAT	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
TAGGGGCCCACCTCCA	ref_4857_missing	2	7	0	6	4	8	7	3	6	1
ATTAGGTGGCTGTAGT	ref_4857_missing	32	60	35	33	72	34	58	25	61	32
CATGTGACCCGACTAA	ref_4857_missing	4	7	10	6	10	5	13	5	14	7
CGTATAAATATTCCCT	ref_4857_missing	2	5	5	5	5	4	8	5	7	3
AATCTGATCGTGTTTC	ref_4857_missing	7	3	2	1	2	3	10	6	6	4
TGCTCAATCGGTGGCA	ref_4857_missing	0	2	3	5	6	8	6	3	12	3
GTCTGAAGATGACACA	ref_4857_missing	4	4	2	3	4	1	6	1	4	1
CATAAGGAACTCGGAG	ref_4857_missing	16	27	20	17	26	20	37	16	33	15
GCCGCATTTATTCCAT	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
GACTCACTTCTGACTC	ref_4857_missing	3	4	5	1	2	2	3	4	8	4
CTGGCATAGCGGTTAT	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
CCGTGCGCTTCGTGCC	ref_4857_missing	0	2	0	0	1	0	2	0	4	0
CTCTCCATTCTAAACT	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
ACACCACCGTGCGTAT	ref_4857_missing	5	6	3	3	8	0	5	0	4	3
CGGATGATGCCGAGCG	ref_4857_missing	7	17	2	11	7	6	9	4	17	9
CCTTGCCCATTTATGT	ref_4857_missing	12	8	18	15	18	9	24	10	24	8
TATTCTGCACATTTTA	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
ACATATCCCGCTTTAG	ref_4857_missing	2	16	7	1	5	1	2	1	3	1
ACGGTATTGGTTTTCT	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
GTAGCTACACTTCGTT	ref_4857_missing	4	1	1	1	6	0	5	1	8	1
GATTAATCTCTAAGTA	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
CCGTTTCCTACGAACT	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
CACCGTGAGCCACATA	ref_4857_missing	15	32	24	14	45	8	28	12	41	18
CCGAGCATTTAACAGA	ref_4857_missing	29	112	42	41	105	39	105	32	126	24
GAAGTCCACCTTGCGG	ref_4857_missing	0	0	0	0	0	0	0	0	0	0
TTATCTGAGGACGTAT	ref_4857_missing	7	10	6	11	7	3	17	3	13	5
TCTGGGACGATGCATT	ref_4857_missing	1	3	4	2	2	0	3	1	4	2
TTTATTGCATCTCAAT	ref_4857_missing	4	14	6	7	12	7	18	5	16	7
CTATCGCAAGCCAAAA	alt_515_negative	15	13	12	7	6	4	16	5	9	8
CTTGTCGCACCTACCG	alt_515_negative	13	16	22	27	22	26	25	15	27	14
ACCTCGTTAAGACGTT	alt_515_negative	9	17	11	13	14	8	13	13	14	6
TATCTCCTGACAATTG	alt_515_negative	61	53	72	73	72	59	62	43	79	55
AGTGTCGGTTCCATGT	alt_515_negative	32	44	49	55	53	49	50	37	67	41
ACTTATTATCTCGTGC	alt_515_negative	18	16	21	15	14	15	19	20	23	18
TATGCCCATAGTGTTT	alt_515_negative	0	0	0	0	0	0	0	0	0	0
AGCCTTTCCATGCCGG	alt_515_negative	0	0	0	0	0	0	0	0	0	0
AAATCTAGCCTAGAGA	alt_515_negative	60	53	88	67	71	59	76	60	81	55
CGCCACTGTGCTTACT	alt_515_negative	0	0	0	0	0	0	0	0	0	0
GAGGGCCGACCACTAC	alt_515_negative	12	8	20	8	21	19	20	13	7	10
GCGGAGTGTACATAAT	alt_515_negative	282	245	305	268	277	254	291	243	283	245
GGCATGGCAGTGCATG	alt_515_negative	0	0	0	0	0	0	0	0	0	0
TTTTTCCAGTCCCATT	alt_515_negative	92	95	102	97	106	69	123	90	104	110
GGGTTTGGTAGAATGT	alt_515_negative	62	69	80	53	81	56	64	70	85	55
CAAAGGTACGATGCAT	alt_515_negative	0	0	0	0	0	0	0	0	0	0
TCAGTCTAAATCCATC	alt_515_negative	68	84	87	91	65	77	74	75	74	70
GCCATTTATCCTATAT	alt_515_negative	58	63	84	61	83	84	70	66	37	49
CGCAGGCTTATTCAAG	alt_515_negative	0	0	0	0	0	0	0	0	0	0
GTGCTTTATTTTTAAT	alt_515_negative	17	28	30	27	28	23	28	32	29	25
CTGCTGTGTCGTAAGG	alt_515_negative	0	0	0	0	0	0	0	0	0	0
CTGTTAACTCGTGGTC	alt_515_negative	36	36	37	25	53	28	53	27	48	37
CCCACTGCCCTACTGA	alt_515_negative	31	57	50	52	66	50	55	61	69	42
CTGGACGTCGCGACGC	alt_515_negative	83	67	101	76	62	77	74	64	64	56
CTCGGTTTGGTAGGAT	alt_515_negative	77	75	102	73	75	77	84	71	87	81
TACACTCGAGTGTCAC	alt_515_negative	0	0	0	0	0	0	0	0	0	0
GTCATGTCACCAGCTT	alt_515_negative	3	3	3	2	5	2	3	4	2	5
GTGGGTATGTCCCCAA	alt_515_negative	0	0	0	0	0	0	0	0	0	0
GAATACTTTTTGTTTG	alt_515_negative	14	22	17	15	11	13	22	25	21	13
CTGGATGTAATTATAC	alt_515_negative	12	24	12	14	14	9	18	10	21	6
AGATCTCTCTCCGCCC	alt_515_negative	6	8	11	8	4	6	9	6	11	12
TGTTGCTGACCCACTG	alt_515_negative	14	4	15	9	14	13	26	19	14	17
GTGGGGCACGCGGACC	alt_515_negative	44	50	54	38	61	43	46	37	48	51
GGGCCGGCTAATGTTG	alt_515_negative	77	74	63	75	73	65	73	69	76	57
ATGTATGTTACGTGCT	alt_515_negative	162	172	223	153	176	162	229	129	231	131
TCTCCGAGTCGGGCCT	alt_515_negative	13	16	9	8	11	7	21	15	18	11
GGCACACGGTCGGACT	alt_515_negative	30	42	30	41	53	36	52	20	44	22
ACTCTTTCATTTTCTT	alt_515_negative	38	30	24	36	16	18	28	19	24	30
ACGGCCGTAGAGGCAG	alt_515_negative	0	0	0	0	0	0	0	0	0	0
GTACGCGGCATATTGT	alt_515_negative	74	85	79	69	114	69	105	65	103	85
TGCTAGAATTGTTAGC	alt_515_negative	20	45	19	11	24	14	36	6	33	14
CTTGTCCTCTAGTGAC	alt_515_negative	23	29	42	30	26	30	40	32	39	27
TTTACTTTATAGTTCT	alt_515_negative	8	11	13	14	22	13	16	11	14	8
TGCTTATTGGGTAAAA	alt_515_negative	0	0	0	0	0	0	0	0	0	0
ACAAGAACTGAGTGGT	alt_515_negative	48	64	50	55	57	57	51	41	63	43
AAACCATGAGCTGTCT	alt_515_negative	40	40	36	39	51	26	36	34	40	37
CGTGTCGGCCAACTCA	alt_515_negative	5	8	4	11	12	3	9	0	11	4
TAGTATCGAGTTGTCG	alt_515_negative	5	6	13	3	9	3	6	3	9	3
TCCCGGATATTTCAGT	alt_515_negative	7	10	1	2	3	2	5	2	1	1
GCTGCAATGCTTATAT	alt_515_negative	8	12	6	9	13	14	11	10	18	9
GGGTCCTAAGGATATA	alt_515_negative	43	42	31	35	41	27	35	36	48	51
TTATAGCTTGGTAGTG	alt_515_negative	29	49	38	33	47	41	33	30	27	33
CCGGGCTTGAGAGACT	alt_515_negative	93	220	115	121	210	85	248	84	229	68
TGTTGTTCCTAAGAGT	alt_515_negative	98	115	79	95	74	82	91	55	123	51
GATGGTTGCACGTCAT	alt_515_negative	0	0	0	0	0	0	0	0	0	0
ACTGACATAGTGCGCA	alt_515_negative	267	276	294	283	349	238	286	255	358	243
GCATCATGGTCACGGA	ref_5701_new	99	73	92	60	74	62	69	59	84	71
CCGGACGTTTTATCCC	ref_5701_new	22	49	13	14	55	21	55	21	46	22
GATTTGCGAGATCAAC	ref_5701_new	92	74	121	93	79	96	90	81	91	73
GGCATTACGTGATTCC	ref_5701_new	25	34	38	31	39	40	37	35	35	25
TCTCTCGCGATAATTT	ref_5701_new	0	0	0	0	0	0	0	0	0	0
TATGTACTTCATTACA	ref_5701_new	73	78	86	65	61	53	62	60	66	68
TCCGGTCGAGAGGCAA	ref_5701_new	1	19	5	2	17	4	21	2	13	9
ATGAGTCTCCATGGTC	ref_5701_new	0	0	0	0	0	0	0	0	0	0
CTGGTTTAAAACACCC	ref_5701_new	3	2	1	3	3	0	1	0	3	2
GACTGTAGTCGTAAGG	ref_5701_new	7	5	20	9	11	11	12	15	15	14
GTCAAGAACTTAATCA	ref_5701_new	72	71	71	56	69	75	79	46	67	65
AAGCTTGGCGATCGTT	ref_5701_new	16	5	14	10	5	12	12	12	13	7
TTGCCATGGCGGCCAA	ref_5907_new	12	29	19	17	23	11	20	16	29	20
GTTATAAGCATCTTAC	ref_5907_new	20	39	30	35	53	27	45	17	47	20
TGTGTAGGAGCGCGAG	ref_5907_new	15	37	23	15	32	14	30	27	21	17
CGTAATAGAGTAAGCT	ref_5907_new	17	32	18	23	31	15	35	18	40	13
TTTTGACGCCGGATAG	ref_5907_new	0	0	0	0	0	0	0	0	0	0
TCTCTCATTCCCGTTC	ref_5907_new	26	49	29	39	60	26	62	27	59	29
GTCAGGCGGTTGTTAT	ref_5907_new	1	1	3	1	5	3	2	0	6	1
ATTGTTGCTCCTAAGC	ref_5907_new	0	0	0	0	0	0	0	0	0	0
GTGCGGGGTATGTCAA	ref_5907_new	4	18	7	9	9	7	12	6	15	9
TCCGCACGGCCCGATT	ref_5907_new	34	39	28	25	38	31	27	25	43	22
ATCCTTGTCCCGCAAA	ref_5907_new	0	0	0	0	0	0	0	0	0	0
TTTTATCTACGCCATA	ref_5907_new	34	52	41	33	58	39	81	44	52	43
AAGTATGGCAATTGTT	ref_5907_new	24	33	33	24	25	24	43	20	52	18
GGTAAATTCCCCGGCT	ref_5907_new	0	0	0	0	0	0	0	0	0	0
GCCGTTAAGGGCAGTG	ref_5907_new	58	96	68	37	105	64	100	48	91	50
GTCCTAGGTTTTCGGT	ref_5907_new	21	19	15	10	33	10	24	8	38	18
GCCGAACTTTTTCAGA	ref_5907_new	70	104	77	60	101	69	106	58	135	61
GGGTGGTTTTTGTGGC	ref_5907_new	0	0	0	0	0	0	0	0	0	0
TGCTCACTCCGTGCAA	ref_5907_new	0	6	2	3	2	1	2	1	1	1
ACGCATATCATTTAGC	ref_5907_new	2	3	4	6	11	5	11	6	14	6
GCAAGTTTTTTTCGCC	ref_5907_new	15	39	20	14	28	8	28	21	29	14
GCTTTTTACCTTTCAA	ref_5907_new	11	20	14	9	22	13	25	16	23	9
GCATCAATTCTTATGA	ref_5907_new	0	0	0	0	0	0	0	0	0	0
CGGTATGCATCTGCAG	ref_5907_new	25	60	20	18	50	16	54	25	52	27
TTTGCATCTTCGATTC	ref_5907_new	38	59	25	20	54	25	34	26	48	34
AAAAATGTGTTGCTCA	ref_5907_new	11	20	11	17	14	18	25	13	22	15
GAATCAGTTATGCTGG	ref_5907_new	0	0	0	0	0	0	0	0	0	0
CTATACGGCTTTTGGT	ref_5907_new	10	23	14	10	13	24	30	10	22	9
TTGTCTAACTGCTTCA	ref_5907_new	39	80	53	46	84	47	91	41	92	44
AACGAGAGTTGTACCC	ref_5907_new	42	88	58	46	86	46	100	39	98	41
CGCATCCGCGAGGCTT	ref_5907_new	3	3	3	7	3	4	9	2	5	2
ATATGCACCATGTTTG	ref_5907_new	53	89	70	38	82	53	103	36	97	34
GATACTGCTATTTCTA	ref_5907_new	4	5	6	3	7	2	4	3	3	0
CATGAAGCCGTCTGTA	ref_5907_new	4	7	7	13	12	9	12	6	12	10
GATGGACCTATGGGCA	ref_5907_new	20	35	17	21	36	15	35	19	24	15
TGGCTGGCCTGAAATG	ref_5907_new	2	5	5	2	5	2	4	1	4	2
TATTCACCCTTAAAAT	ref_5907_new	0	0	0	0	0	0	0	0	0	0
CAGCTGTTTATATTGT	ref_5907_new	26	35	23	33	46	35	39	17	34	18
ATAGTTCAAGGCCGGA	ref_5907_new	33	46	34	37	57	36	54	30	65	38
TACCCAAACTTGAGTA	ref_5907_new	1	3	1	2	9	1	3	0	3	2
TCAATGTTTATAGTTC	ref_5907_new	0	0	0	0	0	0	0	0	0	0
CCTCATTACTTAAGAG	ref_5907_new	14	46	21	36	72	19	60	25	65	22
AGTTATCGCTTTGGTT	ref_5907_new	0	0	0	0	0	0	0	0	0	0
ATGATCGCCACCACTC	ref_5907_new	0	0	0	0	0	0	0	0	0	0
CGAGTTTTATTTGACC	ref_5907_new	12	28	16	10	33	13	36	14	27	18
ACTTCCGATGTTGGAG	ref_5907_new	2	6	1	3	6	2	5	4	6	1
TCGGACCGTGTCTTTG	ref_5907_new	0	0	0	0	0	0	0	0	0	0
CACTGTCTCCGATGCT	ref_5907_new	7	18	16	11	16	13	18	7	17	11
AATCATTTAGCATAGT	ref_5907_new	0	0	0	0	0	0	0	0	0	0
TAATAGGTGGTTCTCA	ref_5907_new	28	61	37	39	61	29	58	26	69	26
TATCTACGCACTGGTT	ref_5907_new	11	14	13	11	23	15	16	11	16	5
CCTACAGATTAATGCT	ref_5907_new	0	0	0	0	0	0	0	0	0	0
AGGCACGGCAAACCAG	ref_5907_new	24	34	28	23	37	26	46	33	51	27
CGTTGTCACGGTCACT	ref_5907_new	2	9	4	5	11	8	11	5	4	3
TGGATCTCGCGTAAGT	ref_5907_new	37	61	48	36	50	41	58	27	52	31
CCTGAGCCCTCTACAA	ref_5907_new	6	3	5	3	9	3	6	3	12	6
TTTACGCTGTAGTGTG	ref_5907_new	8	17	16	7	16	15	14	12	21	12
ACCGTGCTGCTTGCCC	ref_5907_new	0	0	0	0	0	0	0	0	0	0
CTTAGGAAAGCTGGGT	ref_5907_new	0	0	0	0	0	0	0	0	0	0
GCCATTTTACAATTTG	ref_5907_new	0	0	0	0	0	0	0	0	0	0
TGGATTCTCAAATTGC	ref_5907_new	29	64	31	25	69	23	63	25	84	34
GTTGCGTAGTCTCAGA	ref_5907_new	0	0	0	0	0	0	0	0	0	0
GCTCCCCGATCCGTTT	ref_5907_new	2	14	2	2	11	1	10	1	16	2
CTAAGTCGGGTTTTTC	ref_5907_new	13	13	21	12	15	14	21	13	18	9
CATTGGTCTCGTCAGT	ref_5907_new	68	111	74	83	103	84	108	65	120	82
ACGGGCATCGGACTCT	ref_168_missing	24	35	21	20	20	13	43	19	40	21
TGAACATTAGTGTTGG	ref_168_missing	3	10	8	8	11	11	3	11	10	9
TTTTGCTCGGCTAGCG	ref_168_missing	22	15	13	14	15	10	17	12	14	8
GTTACTTTTACGGTAT	ref_168_missing	29	44	31	23	46	37	33	22	46	26
AGGGTATTTGGGCTTT	ref_168_missing	9	15	14	12	2	10	14	6	17	7
TCAGCGTTCGGGTAAC	ref_168_missing	0	0	0	0	0	0	0	0	0	0
GTAAAGGGCGTCAAGT	ref_168_missing	10	18	22	13	16	14	26	14	24	14
ACGTCGAGGAGTAATT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTCTTAGAATAG	ref_168_missing	0	0	0	0	0	0	0	0	0	0
AAACCACTATTTGCGG	ref_168_missing	19	27	19	25	30	23	36	9	23	22
AAGCTCCTCCATGGGG	ref_168_missing	14	4	3	9	6	5	13	7	12	11
TGTGGGGACTTCTCAA	ref_168_missing	61	82	97	68	104	81	104	55	84	79
TCTCCTTATTTATGCC	ref_168_missing	1	8	9	9	1	7	3	6	8	3
GGCCATGCGTCTCCAA	ref_168_missing	0	0	0	0	0	0	0	0	0	0
GATAGTAAAATTCTGG	ref_168_missing	36	62	54	40	56	44	65	46	53	31
AGTCCCGAGTCAGCTA	ref_168_missing	2	3	4	5	0	3	4	1	3	0
GCAATCAGAGCGCGTT	ref_168_missing	34	46	37	34	35	38	33	31	36	25
AAGCCATATTCATGGC	ref_168_missing	15	14	17	8	11	16	19	14	27	11
TGAGGACTTTTTAGCA	ref_168_missing	0	0	0	0	0	0	0	0	0	0
ATCGGGTATGCTCTGA	ref_168_missing	135	196	187	190	217	119	198	134	183	157
CTGTATGAGTTTAATC	ref_168_missing	23	41	36	26	34	19	46	17	36	18
GCGCAAATCGCGTTTC	ref_168_missing	0	0	0	0	0	0	0	0	0	0
TCACCTACTGCAGATT	ref_168_missing	5	19	6	10	15	6	16	7	17	7
TGTAATCCGTTGGAGG	ref_168_missing	40	79	62	47	45	50	47	44	81	44
CTTGCTTGGTTCAGTG	ref_168_missing	32	47	53	34	70	33	63	38	80	33
ATGTATTCTAATTACC	ref_168_missing	4	12	5	9	7	5	16	5	14	4
CACTCTTGGTGGCGGC	ref_168_missing	24	20	25	12	25	10	16	14	21	8
CGAATTACAATAACAC	ref_168_missing	32	50	44	49	51	53	65	51	72	33
CTTAGGTGCTAAGAGC	ref_168_missing	5	1	1	7	4	3	9	3	10	3
GCTTTCCCAGCCACGA	ref_168_missing	14	12	13	11	8	10	18	12	13	15
CACCTTACATACCTCT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
GAAGGTCTGTAGGACA	ref_168_missing	9	7	9	8	12	10	12	5	15	3
TTGACGCAGACCACTC	ref_168_missing	7	17	11	13	8	6	19	5	9	10
ACCACGTGTACGGTGT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
GCCCATTCCTGTCAAA	ref_168_missing	33	46	38	32	46	36	62	39	59	37
TTCTGGAGTCGATGAT	ref_168_missing	9	23	13	13	15	9	14	11	11	10
CGTCTGGGTGATGAAT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
TTTAGTTCCAGTTGCT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
CGAGGCTTCTACTGAT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
TAATCTTCCGCGCGAT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
CATTAGTCATTAGTTG	ref_168_missing	21	28	22	17	29	19	20	22	28	11
GCAACCGTCTGGCAAG	ref_168_missing	14	31	21	8	22	25	31	19	30	17
GATCATTTGCTTTAGT	ref_168_missing	0	0	0	0	0	0	0	0	0	0
CTTATTAGCTTGAACT	ref_168_missing	9	5	10	9	11	15	16	7	18	14
ATACAGTAGCTTGTAA	ref_168_missing	12	13	20	9	13	9	9	10	15	8
GCTTTTGCGGCAATAG	ref_4439_missing	2	7	3	2	2	2	3	1	1	1
CCTGAATTGCTCGTCC	ref_4439_missing	2	9	6	7	18	2	13	7	9	4
CCTGTTGGCGATCAAC	ref_4439_missing	10	24	17	14	23	14	20	9	18	13
GAGAACGCCGCAAGTA	ref_4439_missing	30	62	24	27	49	19	43	34	62	17
AATTGCTTTCATCCAA	ref_4439_missing	14	31	15	13	39	15	44	15	26	16
GAATTCGGTATCCAGG	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TCATAGAATAAAGCCC	ref_4439_missing	17	38	18	25	43	18	39	23	44	8
CGCGACTGGTTCGCTA	ref_4439_missing	5	9	1	5	9	2	20	2	12	0
ACTACATTGTCCGACC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TCCTGGGGAATAAGTA	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
CGCTCGGTCGACTTCA	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TCTTGGCTGGTAGGTA	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
GTGTTCTGTTCGATAT	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
CCAGCTTTCATCTGAG	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TCTGCCTGAACTACAT	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TCTAACTGCTGTTTAG	ref_4439_missing	13	36	19	15	39	12	36	16	31	18
CTTGATTCCCCGTGCC	ref_4439_missing	9	27	16	9	39	11	44	5	34	8
AATCCGGTACGCCTTT	ref_4439_missing	12	27	4	6	25	7	25	2	33	6
ACCAGATTGGCTATTC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TGCGTGGCGCTCCCAG	ref_4439_missing	8	13	9	5	8	5	9	5	10	3
GGCTCGCAAAATCTCG	ref_4439_missing	0	0	0	0	1	0	0	0	0	0
TAGCGTAAAAGTCGTG	ref_4439_missing	19	45	24	13	59	19	50	17	49	23
GTAGACCTTACAAGGC	ref_4439_missing	21	51	46	37	74	28	78	30	75	35
GTCTTAACAGATTTTG	ref_4439_missing	0	0	0	1	0	1	0	0	0	0
ATGGCCAAATATTTTA	ref_4439_missing	0	0	1	1	4	1	0	1	5	0
TTCTGGTGACCCTAAA	ref_4439_missing	1	4	0	2	3	2	8	4	6	0
AGTTTAACCATAGGTG	ref_4439_missing	1	15	5	2	9	7	5	7	8	0
GTCGGGATAGCTCCTG	ref_4439_missing	13	31	9	13	21	8	25	13	23	12
ATGTTCAGGGCGATGT	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
CACACACTTGCAGCTC	ref_4439_missing	4	27	14	7	26	5	21	13	17	8
ATTGTATACGTGTAAG	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TTAGGTAATTTTTTAC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
GTTTTGGCACAGGATC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
ATGCGTCTTGAATATA	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TTTGTGTGTTAGCTCA	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
ATGTCATAATGGGTCC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
GCTCTAACCCTCGCCG	ref_4439_missing	1	4	0	4	5	1	6	0	6	0
TCCACCTCCGACTCGC	ref_4439_missing	5	18	1	3	12	0	14	1	19	4
GATGTACCATGGTTAT	ref_4439_missing	2	4	3	2	3	6	9	6	8	1
TTTGCGTCTCCCTTGC	ref_4439_missing	14	53	10	12	43	9	37	9	53	10
TTGCGAGTGGAGTATT	ref_4439_missing	15	39	18	19	32	12	47	24	45	13
TTATGAGATCCAGCGG	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TCTGTAAAGCTAAATT	ref_4439_missing	0	4	2	3	2	1	1	0	4	0
ACTCCATCTATCTGGC	ref_4439_missing	2	9	2	5	10	6	12	2	11	5
TGTTAGTATGACGATG	ref_4439_missing	14	31	15	12	18	13	39	15	36	16
GTACCGGACGTCTACA	ref_4439_missing	4	10	7	1	11	3	7	4	10	2
GAAACCTGACTCTCAT	ref_4439_missing	7	16	12	5	26	8	27	7	16	8
TCTTTCTAGACGTCAG	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
GGTGGGCGGCGTGACT	ref_4439_missing	1	7	5	3	8	2	12	3	5	6
GCGGGTCACGTTAGTG	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
CTTAGTGCGGGAGCTC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
ACGTCAGCGGGGCCGT	ref_4439_missing	17	17	13	13	20	23	13	9	21	13
CAAATTTCCTAATATT	ref_4439_missing	20	38	14	22	28	15	43	20	39	7
AAAGGTCTGGGAAGGT	ref_4439_missing	12	19	8	7	31	10	28	13	28	21
GGTCACCCTCTTGGTT	ref_4439_missing	1	2	1	2	2	3	5	2	2	0
TTGGGCTTCTAGAACA	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
ATCATAGCTGCGCAGA	ref_4439_missing	6	17	11	7	18	1	11	10	7	8
TCTCCGATCGGTTCCT	ref_4439_missing	11	35	12	7	47	15	52	8	53	17
CTTTTTATCCTCACTC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
CGCGTCGAAAGTTTGC	ref_4439_missing	3	7	8	3	11	3	9	5	10	1
GCTCTCTTGGTCACTA	ref_4439_missing	18	47	20	34	47	14	39	19	49	24
GTAGCCTCATAATCGT	ref_4439_missing	6	18	13	11	10	9	22	8	25	5
ACGCGAAGTAAAGTTC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TTGGCTTGTTCTAGCA	ref_4439_missing	19	45	24	11	60	12	39	15	56	3
TTGTGATCTGTGGCGC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
CGGCGAGGTTTGCTAA	ref_4439_missing	6	21	6	17	16	11	27	11	13	3
GAGTTTATGAGAAACT	ref_4439_missing	7	17	9	4	13	6	18	2	23	6
ACATGCTTGCGTCGAT	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
GAGTTTAGCTAAGCTT	ref_4439_missing	1	2	1	0	1	2	2	0	1	0
TTTTTCTGTTATAGAG	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
GAACGTTGATGTAGAG	ref_4439_missing	25	38	21	14	41	11	32	16	28	11
ACGACTCGCTTAGTCA	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTTTCTGTTAAC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
AGTGGGTTTTACCGCG	ref_4439_missing	35	54	21	26	71	31	70	26	78	39
CATCGGTCACTCTTCC	ref_4439_missing	0	0	0	0	0	0	0	0	0	0
AGACAGTTGAGGCTCA	ref_6062_new	28	51	16	21	37	9	41	15	62	9
ATTCCTCGTTTCGTTT	ref_6062_new	32	41	27	25	56	31	60	23	46	21
GTGTTAACTTTAACCT	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CGCAGGGTAACGGCTC	ref_6062_new	1	2	5	3	12	1	5	4	4	2
GAGTTAAGGTGCTTAT	ref_6062_new	2	4	2	0	7	4	4	4	1	4
CTTGTAGGAGCTCACT	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TCAGGCCTTCCAGGCG	ref_6062_new	0	0	0	0	0	0	0	0	0	0
AATTACGGCGATCCTC	ref_6062_new	47	96	53	39	69	47	112	39	108	43
GGCCTTCATCGAGACG	ref_6062_new	13	40	24	20	32	15	34	22	42	14
CTCCTATGTCGGCGTT	ref_6062_new	23	50	35	25	54	17	72	30	52	30
AAAGAGACTTGCGAGC	ref_6062_new	36	68	42	30	81	24	78	37	94	33
CAAAATTTACGTGGTA	ref_6062_new	22	51	31	27	58	22	54	24	55	16
AGTGGATTCTCCTTCT	ref_6062_new	17	36	16	12	24	9	29	16	38	10
ATAATCGGCCGTCTTT	ref_6062_new	6	9	8	1	12	2	6	5	13	1
ACCTTTGATCCGCTAC	ref_6062_new	34	95	57	31	84	29	72	25	65	31
TATACTACTTTGCTGG	ref_6062_new	47	94	56	55	108	30	100	41	95	54
TACTTTGAGATCGCAT	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CTCTTATCATCGCGTT	ref_6062_new	13	33	12	11	20	21	22	16	36	5
CCCAGTCGCCTCACTG	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TGATTGGGCTCCATAT	ref_6062_new	50	105	75	56	102	52	106	51	96	51
CTCGGTTGCTACTATC	ref_6062_new	11	20	11	16	21	10	32	9	23	13
GAACTATCTTGTTCAC	ref_6062_new	0	0	0	0	0	0	0	0	0	0
GTCCCATTAGACGCTC	ref_6062_new	4	21	4	5	14	5	24	2	12	9
GCGGTTTGCATGTTTA	ref_6062_new	3	11	2	4	5	2	9	5	7	4
TTATTTTAGAGGACCA	ref_6062_new	1	12	7	3	9	4	10	1	14	1
TTCCAGCGAGTGGACA	ref_6062_new	25	44	13	17	35	12	25	18	41	17
TGAGAAGCGAAGGGCG	ref_6062_new	6	10	6	4	3	3	7	3	6	0
ACTATGTTCTCCTTTG	ref_6062_new	19	40	21	21	34	9	35	11	34	11
CATGTTCGGTGGTCGA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CTTTATGCCTTATATC	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CGGTTGTGTAAACGGG	ref_6062_new	48	124	55	56	115	43	120	39	143	48
CTTCGCCATTCGACAG	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CTCAAGGACATCGAGC	ref_6062_new	0	0	0	0	0	0	0	0	0	0
ACTCACGTCTTCCTCC	ref_6062_new	17	23	10	11	23	10	24	5	28	7
TCAAATCCCTTAAATG	ref_6062_new	0	0	0	0	0	0	0	0	0	0
GTGTTGTGGCTCCGCG	ref_6062_new	10	53	21	16	51	18	44	12	52	11
AGAGTGCCTCGTTATT	ref_6062_new	5	33	12	9	40	9	35	10	31	9
TATCAGGATGTTGTAG	ref_6062_new	0	0	0	0	0	0	0	0	0	0
GACGCCACCGCCCACG	ref_6062_new	21	67	30	18	80	37	72	25	62	36
CATAGGCCATATATAT	ref_6062_new	1	0	2	0	1	0	2	0	0	0
GTATTGTTCTTATTAT	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CCAACCTTCTCCTTTC	ref_6062_new	1	42	8	3	30	1	37	1	29	0
ATAAACCGATAGTCGT	ref_6062_new	14	46	21	14	33	16	47	13	46	17
CTAGGGACTGAGACAT	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TTAGGATTTGAGTTTA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
GGTTCAAATTCGGGTA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CACGCCGCCCTTTAAA	ref_6062_new	23	65	32	41	58	30	81	30	81	36
AGGTGGCTATAAGGCT	ref_6062_new	0	0	0	0	0	0	0	0	0	0
AGTAAATCGGTATGTA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
AGTGCTAGGCTACGCA	ref_6062_new	3	3	0	2	6	1	5	0	3	2
TTCATGTCATAGAACC	ref_6062_new	33	58	38	44	77	35	75	33	95	22
TGTCTTGCTCTGTCAA	ref_6062_new	6	24	9	8	32	7	41	9	28	8
GTCCGCATTTGTAACG	ref_6062_new	23	59	39	13	48	22	38	16	52	17
GGTGTTAGCTTTTCGC	ref_6062_new	1	10	3	3	10	2	10	2	6	3
TAGACCATATAGACCA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CTCCTGCGATTCACTT	ref_6062_new	38	79	35	43	64	37	85	36	70	29
CCCGCTTCATGTCTCG	ref_6062_new	10	30	14	13	32	7	38	8	38	17
TTTGGTTCGTGCCGGC	ref_6062_new	13	27	19	7	28	18	14	9	24	8
GTTATTGTTGTTGGTA	ref_6062_new	22	46	16	17	47	20	55	27	49	19
TCATTGAAAGATTGTT	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TCTCATGCTCCTGCCA	ref_6062_new	6	13	5	2	17	4	28	3	12	6
GTTTTTGCGTGACGAC	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TACTGACTTTACTTAG	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TTACAACGTCCCACAC	ref_6062_new	39	134	41	39	102	42	109	40	121	60
AGGGCTTTAGTGGAAA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
TTCAGCCCTGTTACGA	ref_6062_new	23	60	29	35	69	17	80	20	71	26
TGGACTTCAATTCATC	ref_6062_new	12	26	12	14	36	11	40	23	30	16
TGCTGGGATGGCTTCC	ref_6062_new	27	25	33	23	51	25	59	22	54	20
CCCTATGCTTCGGATG	ref_6062_new	11	28	8	8	23	7	27	8	22	6
TAATGCGTGGAAAATT	ref_6062_new	24	58	36	44	78	39	90	25	83	22
AGCTGTCTTGTACTGT	ref_6062_new	16	35	21	12	25	13	22	16	23	14
GCGGACTACTTAGTGA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
CCTAGATTTGATTGAA	ref_6062_new	1	9	2	4	9	2	8	1	5	1
ACCAATTTCGCGTCAA	ref_6062_new	23	56	19	30	72	15	65	26	62	19
ACCTGCCGCGATCCAG	ref_6062_new	22	36	20	10	50	23	52	18	45	12
TCAAAAATTCCAACCT	ref_6062_new	19	44	22	16	36	36	53	16	54	13
ATCGTCTCAATAGGTT	ref_6062_new	27	67	44	32	104	47	82	33	83	19
GTCTAGAAGACGTGGA	ref_6062_new	0	0	0	0	0	0	0	0	0	0
AAGCGAGGCGGTCTGT	ref_4775_missing	13	27	24	25	26	28	24	27	19	21
CGTACTAAGGGACTCT	ref_4775_missing	8	5	12	5	12	8	7	8	5	11
ACCAACATCCATTCTA	ref_4775_missing	8	5	4	6	7	4	9	7	10	4
GGAAGGTCACTTTCCT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
TCGTTGCTTCTTGGGT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
CCACATGCTTTTCGTT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
GCTAACCGCCCTGTTG	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
TTTACCGTAAGAACCC	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
TGGGCATATATCAATT	alt_4775_missing	60	59	64	54	44	53	56	64	53	44
TATACCCGCTGGGCGA	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
GACCTCGATCCTCTTC	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
TTTATATTAGTTGTAT	ref_4775_missing	7	4	1	1	1	7	7	3	8	1
TGCGTCCTCTCGTCTA	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
CCCGCGGGCACATCTG	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
CCCCGAAGGCAAATTT	ref_4775_missing	3	19	3	3	9	4	24	5	14	5
GGTTTTGACAGGTTTT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
TGCCGTTCAGACTGGG	ref_4775_missing	3	7	4	4	7	2	20	7	12	5
TTTGGGTCGGTAAATT	ref_4775_missing	11	13	11	5	8	10	8	6	11	6
GAACATGGTGTCGGAT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
TTATTGGGATTTACGA	ref_4775_missing	35	49	36	22	37	32	43	25	54	20
TAAAGGGGTGTGTCGG	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
ATTTGTGGTACTTGCT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
CTATATTAGCCACTCC	ref_4775_missing	12	11	12	20	17	9	11	17	12	7
TTATGGTGGGGGCCGT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
AGTCGTACCACTACAT	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
CTAGATTTTGTAGGCG	ref_4775_missing	0	0	0	0	0	0	0	0	0	0
TAACCTGGCATTCTTG	ref_4775_missing	19	18	18	18	19	10	29	20	22	17
ACGGGTATGCGTATAG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCCTGGTAAGACCCGG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTGTTCTTCATGTACC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTTGCCTTTGCTACTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TCGTTAGCACAGTGGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AAGATCGAGTTCGAAG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGGATTGTTGTTAATA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTTTGTTTACGTGCAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTGTGAACGGCCCATA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ATCTGACTTCATGTGT	alt_1072_missing	8	30	9	9	15	3	9	7	17	6
TATTCAGTGTTATAGC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGTACGTTTCTTATCA	alt_1072_missing	6	3	2	4	2	2	10	4	10	5
CTGAGCCGTTATCTAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TAGCGCTTTTTAAGGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGGCCGTGACGTTAGC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ACCTAGTTAATCCGTT	alt_1072_missing	6	15	1	5	8	2	11	10	10	5
TTGCCAAGGCCTTCTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTAGGTTCAGGAGTTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GCGCGCAACTCTGGCG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGCTCGGCGTAGTTAA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTGGCAGCCGAACACC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGTTAATCGTTGTTTA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCCAGAGCCATATGTA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AAAGTATCTACACACA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ACTGTCCGTCTAACTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTGTGTTCCATGTAAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ATAGGTTGAAGTATCT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTTACGCTTGTATCAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TATGCACATTCCACGC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGTGTATCAGCAGGTA	alt_1072_missing	5	7	7	5	14	8	15	3	11	2
TTTCATCAATTACACC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTACGATGGAGCCAAA	alt_1072_missing	2	2	0	2	4	3	3	4	4	2
GCTTGGGCGCGTTGTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GCTGGTAGCGAGAGGC	alt_1072_missing	4	4	3	6	3	1	7	0	3	6
CCGGTGCTAGCATACT	alt_1072_missing	5	11	9	11	15	7	7	6	15	2
ACCATAGAGCCTTTCA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GATGGACAGTGCTCTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTATATGATCTGTTTA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TCCTCGAGTGCATATC	alt_1072_missing	7	13	13	5	18	4	20	9	8	4
CTTCCTCTAAGTTGGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CATAATATGGAGTTTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCGTGTAACTGCTAAG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AATCATCGTAATCACC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CGTGGATTACTGTTTA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTATAACTAACCGTTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGCTCTCATGTACCAA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGAGCGATTGGCTAGG	alt_1072_missing	10	9	7	9	17	6	21	10	17	10
CGGATTAACATGGACG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTGAGCTTGGACACCG	alt_1072_missing	10	14	10	5	15	9	15	12	16	10
CACACGGTGGGTACGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTAGGCAGATTACATG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GACATTTGACACATGC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGTTGAGCTATATAGG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCGAGTGCAATTCTGG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TATCTGTGTTTGGTGT	alt_1072_missing	7	8	4	4	15	6	20	5	16	6
CGTTACACCAATGTGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GCGGGTTTGGCCTTAG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CATTGCATTTCTACGA	alt_1072_missing	2	8	2	1	3	3	5	2	2	4
GTAGCTTGGTGCCACA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GGCATTTATTAACGTC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTGTTGTGATTTACCA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ATCGGACATTAGTTGT	alt_1072_missing	6	9	5	5	12	1	6	3	11	4
GCTTCGGCTGCATGTA	alt_1072_missing	7	7	6	5	7	3	12	3	5	1
CACCTTAGTCTAGAAC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CGCAAATCAGTCGTCA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGCATTATTAGGGTAG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ATGCATATCTACTCAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTTGCTCGTCCTTGCA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TAGGAGTCTCCTGCCT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CAAGGACGGCAAAGTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTTGTAGGGCACCGCT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGCAGTTGTATCGCAG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTTGGGATTAAAATTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TCGCCTTAGGTTCAAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GCCTCATATTTGCGTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ATTGATTTTTACGTAC	alt_1072_missing	16	27	21	22	32	17	25	9	35	13
AAATCGCCTAGTATCT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGGAGCTATTCTTAGG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTTATCCTTTCCTTTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCTGTCCGCATGAGTC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGCGTCCAGTCGATCG	alt_1072_missing	0	0	0	0	0	0	0	0	0	1
ATAAAGATGGTGAGAG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCCTTGTAATTACTGG	alt_1072_missing	9	9	5	9	10	4	15	4	14	10
AGCACTCACCGTCCCT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GATATACTCGTATAGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ATTAGCAATGTTATCA	alt_1072_missing	4	16	9	11	14	12	10	8	13	11
AGTGATTATATCAAGG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGTGACGGGTTGACAC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTACCGTACCGCCACC	alt_1072_missing	1	19	0	0	12	1	17	2	8	0
TCATTAACGTTTTACA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TACGGCTTTGTCGAAG	alt_1072_missing	4	4	2	1	4	2	2	0	5	5
TCCACATGGCCTATCC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTTTACGTTGCCGCAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCTCGCCCAGCGTCCT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTGCTAAGAAGTTACG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TACCTTAACGGGGTCG	alt_1072_missing	3	4	3	3	3	3	3	4	7	2
GCTTAATTCCTTCTTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CATACGACCGCTCTTA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ACCCGGTACTTGGCTC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CGGAGTTAAGTCCGGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTCGGTCAACTTGCTA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CATCGCTTCCCACTCG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CATGTCAGGTTTTATA	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGTACGTGGTGCGTGC	alt_1072_missing	6	5	4	6	5	4	7	2	2	2
TAGTCTTTCGGCCGAT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ATGCACCATTATCCCG	alt_1072_missing	6	12	9	4	9	8	11	2	14	5
TCTCCTCTGATCCCGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TGGGCAGTGAGAGTCC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TTATAGTCCTTATGGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTGTCTCGTATTGGGT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TATTTTTATCCGTGTC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ACCATATCGTTGCATT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ACGTTGCTATCTGTTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GGGGATACTTGCTGAT	alt_1072_missing	11	14	16	15	11	7	11	10	21	9
TCTGGGGCACATCCTG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GTATGGTGATTGATTA	alt_1072_missing	11	25	14	12	22	13	12	7	18	7
AACTCGATCATCCACG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CCAGCTTTAGGCTATG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
GGTAATGGACAGTAGA	alt_1072_missing	5	9	5	5	11	2	14	2	14	5
AGTAACCAACGTCCCC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CGTCTCCTTAATACAC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CTGCCCGCTTGCTCTC	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
AGCGTAGATTAGCAGG	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
ACATGATATAGTGGTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
CGGGGTGAAGGTCTTT	alt_1072_missing	0	0	0	0	0	0	0	0	0	0
TCAGAGTCAGCTTGGA	alt_3143_RC	27	43	18	19	46	18	44	22	31	22
TGTTCTGACTATGTTG	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
TTCCCGGATTGGGCTT	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
ACCTGGACTGGATGGT	alt_3143_RC	40	101	52	45	70	41	66	35	82	47
TGCGACGTCTCTCCAC	alt_3143_RC	5	8	14	2	7	6	9	4	7	5
GGCCCCTCCCCAAAAG	alt_3143_RC	11	17	19	10	26	14	18	8	21	11
CGGCGTGCTCAATCAC	alt_3143_RC	14	53	25	20	47	24	65	16	41	16
AAGGTTGGCATCTCTG	alt_3143_RC	15	32	16	24	36	16	46	15	23	20
GCTTCCATGATTTTAA	alt_3143_RC	109	194	123	95	194	102	220	109	227	85
CTTCATTGCTCATCGA	alt_3143_RC	35	82	47	42	76	53	93	47	89	38
TGTGAAAGAGTCCTTC	alt_3143_RC	27	39	27	27	45	17	49	21	50	24
TGTCCGACTCTAGCTA	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
TCACGTTTATCACTTT	alt_3143_RC	7	20	4	11	11	3	14	6	20	2
AACTCAAACGACTGGG	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
CTATATTTAGTGACTT	alt_3143_RC	16	19	15	12	14	11	15	14	24	11
GAACCACAGGGGCCAT	alt_3143_RC	15	38	15	8	24	17	26	16	30	14
TGCGTAAACGCTTTCA	alt_3143_RC	11	21	9	13	26	10	16	10	20	15
CGCTTGTGTTTTAACA	alt_3143_RC	66	170	92	54	196	60	184	63	206	57
ATCTGCTCGGGTATTA	alt_3143_RC	9	24	9	9	11	7	15	3	20	7
GCTCGTGTTCATATTA	alt_3143_RC	27	67	27	27	53	20	68	11	67	28
CTACTGTGCCATCCCT	alt_3143_RC	56	90	66	63	107	51	122	48	101	37
TTCCGGTCTCCAGCTT	alt_3143_RC	13	27	22	10	28	9	18	12	29	8
AGCTATCGACCTGCAT	alt_3143_RC	8	42	17	9	27	15	21	10	28	15
CCTTCGGCGCGCTCAT	alt_3143_RC	38	73	44	26	45	37	64	32	78	32
TTGAACAAGAATATGT	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
TATGCGTTATTCGTGA	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
TATTTCTGTAAAGTAC	alt_3143_RC	11	11	11	10	21	17	23	11	13	9
ATGGGGATTTAGCATT	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
CTGAGGAGTGCTTGGG	alt_3143_RC	24	42	14	6	31	12	29	7	43	10
ACCAGTGTGATGCATC	alt_3143_RC	14	47	17	11	32	19	55	9	51	20
ACAGCACGAGGTTCCT	alt_3143_RC	19	37	25	18	38	16	30	20	39	13
TGTCTTGTGCCATAAG	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
ATCCCATGTGCGCCAA	alt_3143_RC	61	119	63	75	111	85	129	69	106	54
GAAGCTTTTCTGCGCA	alt_3143_RC	8	40	20	23	38	29	26	23	28	20
GCCAAAGGCCCTGACC	alt_3143_RC	10	17	6	9	21	13	23	14	20	8
TAACTTTGCCCTTACA	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
CTTGCTATTTTTTGCT	alt_3143_RC	24	26	17	20	23	11	35	19	43	16
GCATTCGTTTTTGTGT	alt_3143_RC	12	10	10	12	20	6	16	7	22	9
GTGGAATGTGTGTCAA	alt_3143_RC	10	15	11	4	29	2	13	8	18	9
ATCGAATTGTCATTCC	alt_3143_RC	15	13	12	7	11	7	16	8	13	5
GGTCTGTACCGTCAGG	alt_3143_RC	53	114	59	63	112	58	120	46	111	52
GTTCAGAATTTTGTGT	alt_3143_RC	6	4	5	2	4	4	8	2	6	4
TCTATTATGAGATTGG	alt_3143_RC	19	38	23	13	37	22	42	20	39	21
AGCGACCTTTGGTTTC	alt_3143_RC	40	68	72	64	84	44	94	41	110	48
ATGGGGTAATGGGGTT	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
CCGTAACCACCGGCTT	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
AATAGGTTTAGTTTGG	alt_3143_RC	5	7	5	4	6	9	13	4	9	3
TCATCGGATCAATGTG	alt_3143_RC	12	64	19	21	91	13	69	13	80	7
GGTTAAGTTACATCCG	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
ACAGTTTGTGTTTTCG	alt_3143_RC	12	16	20	8	19	12	20	9	23	11
GATGGAAACTCGGTGT	alt_3143_RC	4	10	7	3	8	8	7	7	10	6
TAGACGATAACCCTAC	alt_3143_RC	38	72	40	32	63	30	69	39	63	40
CGTCGTCCGTAGAGTA	alt_3143_RC	0	3	0	0	2	0	1	1	2	2
GATGTCAAGAGTCCAC	alt_3143_RC	14	32	20	12	39	15	40	13	42	10
TGTACAGCAATCGACC	alt_3143_RC	33	82	33	40	86	39	89	35	85	38
CGTGAAGCCCAAATGG	alt_3143_RC	79	134	118	60	148	71	136	66	130	64
GATACCAGCCACTCAT	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
TAAGGATTACGAGTTA	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
AGACGTCAGGATCCCG	alt_3143_RC	0	0	0	0	0	0	0	0	0	0
GCTTCTGTTAGGGGGA	alt_3143_RC	14	24	18	18	23	30	31	16	32	19
TTTTGCCTTGTGAGAC	alt_3143_RC	8	46	23	10	41	14	23	14	33	12
CTACTTCAACCTTTGA	ref_5909_new	5	11	14	9	3	7	8	6	11	6
AATACCTTTTTTCAAT	ref_5909_new	70	52	68	76	60	58	47	66	37	42
CTCTCATAGGCTTTGG	ref_5909_new	55	62	74	71	57	71	77	70	80	64
TAGTAAAGCGTCTGCT	ref_5909_new	13	11	11	7	11	19	13	18	13	14
TTGTGTAGCATGTTAT	ref_5909_new	47	45	69	35	50	45	53	44	53	53
GCACCTGTTTGAGCCT	ref_5909_new	28	25	32	26	25	37	34	30	40	28
AGTTCCAGTAATGTAA	ref_5909_new	60	36	102	72	42	67	49	74	47	73
AGGTGGCGCCTTCACT	ref_5909_new	1	4	5	1	5	3	3	6	7	6
TCGGCACCGAAACCGT	ref_5909_new	0	0	0	0	0	0	0	0	0	0
CTCTTAATAGAATTAC	ref_5909_new	0	0	0	0	0	0	0	0	0	0
CAACACGAATCATCAA	ref_5909_new	0	0	0	0	0	0	0	0	0	0
TACTCCTATGACGCAC	ref_5909_new	65	57	60	49	77	53	52	56	51	51
GTATTTTGTGGCTCGC	ref_5909_new	0	0	0	0	0	0	0	0	0	0
GTACACAGGCCCTTTG	ref_5909_new	20	21	31	16	22	23	14	24	17	28
GGTTTATCTAGCATCT	ref_5909_new	17	22	25	26	19	26	12	25	24	25
GGATAATTCGGCATCA	ref_5909_new	47	35	54	50	55	52	35	49	40	51
TTAACGAGTGGAGACC	ref_5909_new	0	0	0	0	0	0	0	0	0	0
TGCTTAGCTCCTATGT	ref_5909_new	0	0	0	0	0	0	0	0	0	0
GAATTGTCTTGGACTA	ref_5909_new	0	0	0	0	0	0	0	0	0	0
TATTAACAGCGTGACC	ref_5909_new	27	27	41	21	19	26	22	27	24	36
CGAGATGCACTTTGGT	ref_98_missing	3	5	9	0	6	3	5	2	4	1
GCTGGGTTAAGTTTAA	ref_98_missing	3	18	12	5	5	16	9	7	8	8
CCTACTGGTGTGACGG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
TTTCATCTGTGGTTGG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGGGCTTTAATA	ref_98_missing	0	0	0	0	0	0	0	0	0	0
GAATTGATAATCCGTT	ref_98_missing	14	24	15	16	25	13	29	15	19	14
GTATGTAACTGGACTC	ref_98_missing	0	0	0	0	0	0	0	0	0	0
CCGATTCAATTTGATC	ref_98_missing	3	3	2	0	3	1	1	0	2	1
TCTGGTACTGCCCCTT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
CCGATGCCACAAGTGT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
CCTTCTTTACAACGGC	ref_98_missing	0	0	0	0	0	0	0	0	0	0
CGCAAAGGCGAAATTA	ref_98_missing	0	0	0	0	0	0	0	0	0	0
TTCTTCTGCTTTAGTG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
TATGTATAACATCTGG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
TTTAACATCATAACGG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
AATTGAACTCGTTATT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
ATCAATCGTGCCGAGC	ref_98_missing	14	24	11	6	26	18	22	13	22	4
CCGATGCCACACTTGC	ref_98_missing	0	0	0	0	0	0	0	0	0	0
AAAGAGTCTCTAATCC	ref_98_missing	13	13	14	14	19	11	17	24	13	10
CGGGTGTTCGTGACAG	ref_98_missing	38	66	40	36	61	41	61	32	63	39
TAGGCGTGGGTTGTCG	ref_98_missing	1	13	10	4	18	6	8	5	20	8
ATTTTGTACATCATCT	ref_98_missing	15	12	14	7	18	8	26	6	27	10
CTGCATGTTTTTTTCC	ref_98_missing	0	0	0	0	0	0	0	0	0	0
TTCGTATTGGTCGCAC	ref_98_missing	60	92	55	38	79	48	89	48	79	49
ACAGATCTCCGTTCAA	ref_98_missing	7	9	8	6	16	3	8	6	19	10
AGGCTGAAAACGCATG	ref_98_missing	6	7	8	4	8	7	9	5	5	3
TTTAGTTGTTTTTATC	ref_98_missing	0	0	0	0	0	0	0	0	0	0
TAGGCGGGCGTTTTTT	ref_98_missing	12	17	12	7	18	10	18	10	16	11
GGCGAATCGTTTGCGG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
GTGCATAACCTGTTTT	ref_98_missing	13	9	16	7	18	7	13	3	11	10
GCTGCTAAGGTTACTG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
AGTCAACCCTTTCCAA	ref_98_missing	0	0	0	0	0	0	0	0	0	0
AGTCGGGGCCATCCAT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
CATAGCATACATCTCT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
ATTATTGGGCGAAGTT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
AACTATGTCTGTTGTT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
CGTTGCTTTATCTCCT	ref_98_missing	0	0	0	0	0	0	0	0	0	0
CCAATTATTACGCTGT	ref_98_missing	7	21	18	6	19	11	24	21	16	12
GGACGTTTCGCATCTG	ref_98_missing	0	0	0	0	0	0	0	0	0	0
GTGGACTTCTGCTCGC	ref_98_missing	0	0	0	0	0	0	0	0	0	0
GCATGGCTTCATAGTC	alt_3416_RC	55	77	63	62	62	60	57	62	58	48
AAGAATTGAGGCAAAC	alt_3416_RC	7	7	2	7	4	7	6	6	5	5
AATACGTGCGCACTAA	alt_3416_RC	21	11	20	14	19	14	25	12	17	17
CGAATTCCATGCCCAT	ref_3416_RC	159	118	193	164	104	122	117	160	122	176
TATGGGGTCTATGATT	alt_3416_RC	36	43	53	55	35	47	53	30	60	37
CCCCAAAGAAGTCTAG	alt_3416_RC	81	96	83	82	91	68	72	77	86	59
TTCGTACCCAATTCTT	alt_3416_RC	0	0	0	0	0	0	0	0	0	0
TTAAAGCGCCTACCGG	alt_3416_RC	77	77	89	63	90	55	81	71	80	57
TTGAGGTCATTCAGGG	alt_3416_RC	24	37	41	31	33	16	23	28	31	25
CCACCCACTCTGGTTT	alt_3416_RC	19	41	18	34	44	23	42	21	55	18
CCCTCATTACCAAGTT	alt_3416_RC	2	4	3	2	6	1	6	1	5	1
AAGCTTAGCACTCGAC	alt_3416_RC	0	0	0	0	0	0	0	0	0	0
TTCTCATGTCTGAAGT	alt_3416_RC	0	0	0	0	0	0	0	0	0	0
CGTCGTGACCCATGCC	alt_3416_RC	0	0	0	0	0	0	0	0	0	0
TGGGTAGTTTTGTAGA	alt_3416_RC	74	76	96	71	62	69	105	60	90	49
AGTGTGAGTATAACTG	alt_3416_RC	7	3	3	4	8	7	12	8	5	6
CTCATGTCCCTTTCTA	alt_3416_RC	26	40	27	20	35	20	35	31	29	20
CCGCTAGCTCATTCTG	alt_3416_RC	0	0	0	0	0	0	0	0	0	0
CGTCGTCGTTGGATTT	alt_3416_RC	4	3	10	3	2	4	5	3	6	7
CTGGCGGTACTCATTA	alt_3416_RC	37	31	50	33	52	38	42	36	33	36
TGTGCCTCTGGTGGTA	alt_3416_RC	21	12	24	22	28	25	35	18	23	17
TTTGGGTTCGCCGTTG	alt_3416_RC	24	16	32	11	24	23	16	15	24	13
GACCTTTCAGCTGCTC	alt_3416_RC	27	32	33	24	26	38	24	24	25	27
ACGGTTAAGGACGTCT	alt_3416_RC	0	0	0	0	0	0	0	0	0	0
TCAACAAGAGCTTCGG	alt_3416_RC	0	0	0	0	0	0	0	0	0	0
CTCGAGGTGATGACGA	alt_1363_upstream	10	3	13	7	3	7	4	7	6	4
ACGGGCTGGTCAACAC	alt_1363_upstream	392	193	531	492	199	375	206	442	204	377
ACAGGGGGCCTTTTGT	alt_1363_upstream	40	16	28	26	15	36	18	28	17	28
ACGCATCTCTCCTAGC	alt_1363_upstream	72	76	103	80	79	86	83	89	85	68
CTATGCCGTTTTTGGC	alt_1363_upstream	96	68	126	117	61	85	44	100	83	90
TCCTCGGTGAAGCAGC	alt_1363_upstream	0	1	7	6	0	2	3	7	6	5
CACATATCGTGTACGT	alt_1363_upstream	42	26	62	58	26	61	28	45	28	37
TGAACCACGAAGGTAT	alt_1363_upstream	24	18	44	33	19	45	17	31	23	38
TGCTAACCTTTAGAGT	alt_1363_upstream	189	104	238	236	129	182	92	193	116	174
GCGCTCCAAGACTTCG	alt_1363_upstream	4	3	6	3	4	3	6	6	4	4
ACTGCTTCGAACATAG	alt_1363_upstream	48	14	45	56	28	33	27	54	24	50
TGCTCTGCGGGCCGGC	alt_1363_upstream	35	22	57	39	25	44	29	35	20	41
TGCACATGGCCCTTGT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TACCTGGGAATGCCTG	alt_1363_upstream	21	18	34	18	13	26	6	24	11	20
CTGGTAGTACGGGCTG	alt_1363_upstream	110	62	117	105	35	84	54	76	59	83
GTGTTATGGCAGCCCT	alt_1363_upstream	39	21	39	43	30	47	23	40	18	31
TTTCCACGCTTTGTGG	alt_1363_upstream	108	57	131	114	47	84	49	97	57	86
AATCACTAGAAGCGGG	alt_1363_upstream	186	88	231	204	83	175	86	154	89	182
ATTCCACCTCGTTGGA	alt_1363_upstream	15	4	8	12	9	6	2	15	12	11
TGCAACTACATAGCAT	alt_1363_upstream	83	25	113	101	43	53	50	72	48	75
GGTAACGCCCGCTCCT	alt_1363_upstream	120	57	136	112	48	103	76	98	51	98
CGTTACCGAGTACTAA	alt_1363_upstream	9	2	10	8	4	4	2	16	4	11
TACATGTCTTTTGGTA	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
AGTCCTCTTGTTCATT	alt_1363_upstream	224	136	309	244	146	221	130	210	143	231
TCTACCCCCGCTTGCC	alt_1363_upstream	6	15	5	5	9	5	7	5	12	3
GAAACAACCGTGTTGC	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTTCCAATTTGG	alt_1363_upstream	61	38	79	69	38	85	31	70	43	57
CTCTTTGAATGCTCCC	alt_1363_upstream	23	10	28	27	15	12	5	26	12	18
CAAGCTCAGATATTGT	alt_1363_upstream	207	90	235	222	104	217	110	198	124	180
AGGGGTGTTAACAGCA	alt_1363_upstream	12	7	23	11	6	9	3	21	6	19
CTGTGTTATCGCCAGT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCTTATCACTTC	alt_1363_upstream	36	17	38	23	18	23	16	24	29	34
ATCAGGCTTGCTTTTT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
GGTGGATATGTGCCTC	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TATGGTTGGGCATAAG	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TGATTCTAAGCCCATG	alt_1363_upstream	97	60	165	133	60	110	49	77	64	95
GTCATGCTTCGTTATT	alt_1363_upstream	38	19	34	28	12	29	17	29	15	30
CACCTGAATAGCACTA	alt_1363_upstream	38	22	42	39	17	36	15	33	26	34
TCTGTGTTTCGCGTTG	alt_1363_upstream	20	11	20	27	11	29	13	24	16	23
CTATTTGGATGTCATG	alt_1363_upstream	25	26	51	23	21	34	17	35	21	30
TATTCATAGCGGTTTT	alt_1363_upstream	97	37	134	111	39	68	58	89	54	94
ATTCATCTGAGGCTAC	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
CTAATGCCAGTTGAGT	alt_1363_upstream	461	257	495	465	270	409	298	432	285	325
AGGTTATCTCTTATCT	alt_1363_upstream	53	28	53	46	6	48	25	42	23	38
ATTGACGTCTACGATG	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TGCAGTTTTGCCTGGC	alt_1363_upstream	59	17	85	63	28	55	16	68	30	29
CTGCTTGGTATACTCA	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
GAACACGACCCGGCAG	alt_1363_upstream	46	26	83	60	27	50	35	54	27	65
CCTAACAATTAGGGTG	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCATCGAGTAGGT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTCGATATTAGAT	alt_1363_upstream	73	54	98	85	51	103	53	73	37	81
GTTTGCTTATCTATTC	alt_1363_upstream	42	18	41	40	18	28	14	28	22	35
AGATATGTTTTTAATG	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
ACGTGTTTTTACGCAT	alt_1363_upstream	212	106	222	220	122	187	136	189	141	173
TTATTCCAGTTCTATC	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
CGACAATCCGGATTAA	alt_1363_upstream	89	39	118	92	41	53	38	88	38	66
CGATGTAGTATTCCAG	alt_1363_upstream	18	8	14	27	12	12	11	15	20	8
GTTTCGACTTTTGTAT	alt_1363_upstream	16	1	21	8	4	15	5	19	2	13
GGATGGCAGTTTCTCT	alt_1363_upstream	72	32	123	83	43	76	44	78	36	64
GTAATTCACATGACTT	alt_1363_upstream	28	6	30	19	7	30	3	21	12	14
ATGGCCCTTCTTTGTT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTCAGTATCTGTA	alt_1363_upstream	275	177	328	280	155	266	176	292	152	273
TTCCCAGGTCTGAGCT	alt_1363_upstream	67	27	54	56	28	60	30	53	31	42
ATGTTATCCATCGCAG	alt_1363_upstream	127	76	170	138	63	112	54	117	70	110
TTTTTGCCCTACTCTA	alt_1363_upstream	19	13	25	24	15	21	8	14	13	15
TCATTGAAAGGCCTAA	alt_1363_upstream	17	13	27	16	9	20	12	32	4	17
CTCCTACATCAGGTAT	alt_1363_upstream	226	104	235	207	106	198	128	183	103	170
TGAACCCACCGATGTC	alt_1363_upstream	30	13	37	26	17	27	18	31	19	23
GTGTCCGTTGGCTTCC	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
GAAAACTATATTTTAA	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
ATTCCAATTAGAGATA	alt_1363_upstream	94	40	106	107	48	68	42	89	45	74
TCCCGCCTTTCTATCG	alt_1363_upstream	7	2	19	8	3	8	7	8	1	3
TTTCATGTCTCGATCA	alt_1363_upstream	35	21	46	48	14	38	10	41	14	31
TCTTGTTGAGGCGGGT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
ACCGATTCGGCCAGTG	alt_1363_upstream	10	19	28	15	14	10	21	11	23	15
TCAAGGGTGCATGTTG	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
TCCTCTGCAGTGAATG	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
CGCATAATATTGCTCA	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
AATAGTGCGCGGCATA	alt_1363_upstream	7	3	13	10	5	7	4	7	5	16
TGCACCTCTTGTCAAT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
GTTTATGTGCAAACAT	alt_1363_upstream	3	0	1	0	2	4	0	0	3	3
TCGTCCATATGGGTTC	alt_1363_upstream	37	25	50	42	25	27	30	37	39	38
CTTCTTCGCTGACACA	alt_1363_upstream	243	89	293	272	113	230	117	232	125	224
CTTTGGTCGACGCCCT	alt_1363_upstream	0	0	0	0	0	0	0	0	0	0
AGGCACAAGGTGGTTG	alt_1363_upstream	37	19	40	27	10	28	15	33	17	24
CGAATTTTGGTTATAT	alt_1363_upstream	119	37	132	114	40	118	33	89	51	98
TGCATGCGCTCCGTTT	ref_2169_fdr	0	0	0	0	0	0	0	0	0	0
ATTAAAATTTAGTGAC	ref_2169_fdr	37	32	36	43	33	26	50	34	31	26
TGCGAGTGGCACTTCC	ref_2169_fdr	0	0	0	0	0	0	0	0	0	0
TCACCGTCCAACCGGT	ref_2169_fdr	0	0	0	0	0	0	0	0	0	0
CCGGCTCCAGCGCCAG	ref_2169_fdr	3	11	5	2	12	1	12	3	13	3
TGCTAGGTCTGCGCGG	ref_2169_fdr	11	21	20	25	10	18	14	13	18	12
CCGCGCGGAGACTTAC	ref_2169_fdr	103	152	138	121	121	127	142	113	147	98
CATCGGACAGTTGCAT	ref_2169_fdr	0	0	0	0	0	0	0	0	0	0
AGGACCCATGATTATA	ref_2169_fdr	30	38	44	35	32	28	29	48	39	34
CACCGGGTCTGGAATT	ref_2169_fdr	33	53	32	24	55	34	50	19	51	20
TAGCGTGTATAATTGG	ref_2169_fdr	5	13	6	2	1	4	6	10	9	6
TGGGCCGCTAAATTGG	ref_2169_fdr	0	1	6	2	3	2	5	2	1	1
CTCCCGCCGCCGAAAT	ref_2169_fdr	27	33	31	44	32	36	44	37	27	38
ATTTTGCTTTCTTAAG	ref_2169_fdr	10	6	17	12	7	6	7	10	7	11
TCTACCTTGCAAACTC	ref_2169_fdr	32	55	43	39	43	42	43	34	66	27
CCGGATAAAGGGAGGC	ref_2169_fdr	36	70	52	37	44	44	49	44	65	32
CTTATGCTGGCACCAG	ref_2169_fdr	0	0	0	0	0	0	0	0	0	0
TTCGTATTCCCACAAA	ref_2169_fdr	4	4	6	1	3	1	1	2	9	2
CCCTTTGTCATGTGAG	ref_2169_fdr	265	305	298	270	272	259	319	262	321	254
GGAGCGTCCGAGTCTT	ref_2169_fdr	69	88	86	79	92	75	80	78	112	64
GTCGGTTCGTATAAGT	ref_2169_fdr	26	32	42	31	30	38	33	26	44	32
AACTCAAATCTTCTCT	ref_2169_fdr	35	27	28	38	22	34	35	30	46	31
ATTAGTTGCCCTGGTG	ref_2169_fdr	51	59	60	50	46	44	48	64	50	37
ATAGGGACGTGAGGGG	ref_2169_fdr	54	31	48	29	40	42	43	37	36	34
TTCATGGTAGACATTC	ref_2169_fdr	52	52	64	55	59	57	57	68	62	58
CACCGGTATCATTCGT	ref_2169_fdr	7	34	12	24	27	10	28	12	27	14
TAAGTTCATTCCGCAG	ref_2169_fdr	53	56	70	68	61	39	52	53	71	47
TGGTAGGACATCCCTG	ref_2169_fdr	14	19	14	13	17	20	16	12	19	11
AGCGCTTATTTGCCCC	ref_2169_fdr	8	11	11	11	19	7	21	4	12	8
CATCCCATTTTTACGT	ref_2169_fdr	35	43	45	42	45	37	45	42	33	45
ATCTTGTGTACTCCGC	ref_2169_fdr	0	0	0	0	0	0	0	0	0	0
TTGGCTCTAGACTTTC	ref_2169_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGGCTAGCATCTT	ref_2169_fdr	41	56	58	43	48	36	43	42	43	35
CTTATTTGTACGGCTC	ref_2169_fdr	30	28	34	48	28	29	19	33	55	27
TCAGGTAGTTACTTCG	ref_2169_fdr	44	87	61	52	108	55	114	55	115	53
GTTCCGATCACCGCTT	ref_2169_fdr	21	18	22	28	22	21	32	22	32	29
GTCAGTGGTTTTCTTG	alt_1416_upstream	60	100	91	59	118	62	106	74	98	68
GTGAGGGGTGTTCTAA	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CAACTCCACTCTCTGG	alt_1416_upstream	4	15	6	12	8	2	7	3	15	4
TTTGACGTATTACATG	alt_1416_upstream	7	5	6	8	12	13	6	2	7	4
TGGGCATTACTTCTTT	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CTCTCGGCTACTCTCG	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CGTAAGCCATGTGACA	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CCGTCAAATTATGCTG	alt_1416_upstream	7	14	6	4	8	3	13	5	19	5
AGTCGCTGTGGGCTGT	alt_1416_upstream	23	27	19	14	23	10	29	18	26	24
TACACGCGGCCCCCCG	alt_1416_upstream	0	5	0	0	1	0	4	0	4	1
AGATCGAGGGTCAATC	alt_1416_upstream	107	150	136	119	137	103	164	110	162	90
GTTTTGCTACACTGAA	alt_1416_upstream	12	13	12	16	29	10	20	9	37	13
CATCTCATGTGAGCTC	alt_1416_upstream	14	29	18	22	34	23	22	22	27	21
AGGGCAGTCGTTTCCT	alt_1416_upstream	7	11	10	6	5	3	5	2	9	10
CACCGTGATTTTACGT	alt_1416_upstream	13	15	17	14	23	3	19	3	14	8
CTTTCTACCAATTTGC	alt_1416_upstream	40	75	47	36	74	39	64	33	60	38
GTCCATTCGTGCTATC	alt_1416_upstream	60	61	70	49	67	60	73	54	84	55
TGAGGCGATAGCTTTG	alt_1416_upstream	88	159	125	98	131	99	159	96	186	91
TTTCTAAATGCAGTCC	alt_1416_upstream	30	29	31	24	42	22	34	24	34	34
AGTTATCTTTCCAAGT	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTATCAAACCGCA	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
TGGACTTACTGCTTGT	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CATTATGATTGAGAGC	alt_1416_upstream	25	23	17	19	17	23	27	17	27	13
GCCGGTCCGCATTATG	alt_1416_upstream	16	76	27	17	80	21	71	15	81	12
CTACGGGGCTACTTGT	alt_1416_upstream	4	1	5	3	1	3	2	0	3	1
AACTCCGACTTCCTAT	alt_1416_upstream	0	1	0	0	0	0	0	0	0	0
GAACACGACGGTATTC	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
GATCAGTGGAGTCACT	alt_1416_upstream	54	58	58	36	58	50	65	44	73	35
ACACACTGGAATGTGA	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGGTATATCGCGG	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
GTTGGCGCGACCTAAA	alt_1416_upstream	0	2	1	0	0	3	1	0	0	0
CGCGTTCACGTCGCAT	alt_1416_upstream	9	10	9	7	10	6	11	11	10	5
ATCACCTCTGTTCAGA	alt_1416_upstream	22	34	38	22	32	17	34	19	51	29
TTAGCTCTGCTTAATC	alt_1416_upstream	8	13	8	3	6	5	6	9	16	3
GAAGTGACAATGGGAG	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
TTCGGAAGATGAATGC	alt_1416_upstream	191	220	223	194	203	185	252	161	268	150
ACTAAATGAGAGGGTT	alt_1416_upstream	7	14	15	10	3	3	6	7	6	4
CTCCCCAGGTGGCTCT	alt_1416_upstream	3	22	3	4	11	2	23	5	17	4
TAGTGTCGCGCCCATG	alt_1416_upstream	6	4	10	2	8	4	8	6	9	8
ATCACACGCCGCTGAC	alt_1416_upstream	3	9	12	5	6	6	9	9	6	5
TGTACCGGGGTCGATA	alt_1416_upstream	3	6	7	6	10	4	13	3	11	6
CACATTCGGTCAGTGT	alt_1416_upstream	41	58	51	39	54	54	70	36	69	37
TCAGAGGTAAACCCAC	alt_1416_upstream	21	37	29	19	40	20	36	27	31	31
GGTCTGTTTCGCACTC	alt_1416_upstream	51	75	69	58	82	48	89	54	93	68
TGGACGGGGATTATGC	alt_1416_upstream	22	41	30	34	39	33	30	17	39	22
TTAAACGGAACTATTC	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
ACTTTCACTTTCCTTG	alt_1416_upstream	12	13	11	7	15	9	13	12	14	10
CTGAACATTAGTAATT	alt_1416_upstream	34	36	43	34	42	25	63	37	42	40
ATCGCATTCCGGCCCG	alt_1416_upstream	15	36	25	21	25	21	32	29	41	25
AACATCCGTTGACGCT	alt_1416_upstream	9	8	6	10	9	5	14	7	11	7
TTCATCCTCGCCTAGT	alt_1416_upstream	12	19	26	15	24	14	13	18	37	10
CGACCCATACATTTCT	alt_1416_upstream	47	63	58	69	61	47	81	50	73	48
CGCCCCATGTACCCCC	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CCAATCTAACCTCGCT	alt_1416_upstream	15	27	25	18	25	9	15	14	23	9
CATTATGTGAATATCA	alt_1416_upstream	29	22	35	20	42	30	29	12	33	18
ATTTCGAATATAACGC	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CTTCCAGTGAAATGGG	alt_1416_upstream	52	108	72	75	112	64	118	53	121	42
TTTAGCTGCATTAGCT	alt_1416_upstream	15	16	19	15	23	24	29	17	28	13
TATACGTAACGATGCT	alt_1416_upstream	52	84	61	71	71	78	59	64	59	48
CGGACTTCCTTGCAAT	alt_1416_upstream	13	20	7	8	23	14	24	16	22	20
GCGGTACATATCTTCC	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CAGCTATGACGGGAGT	alt_1416_upstream	50	73	46	38	67	53	69	55	74	46
TAGTCCTAGTCCTTAC	alt_1416_upstream	8	22	14	6	35	9	15	13	27	7
TGCGATCGTTACATTA	alt_1416_upstream	73	56	78	66	64	50	74	33	79	40
TGCAAGTCACTCGTAC	alt_1416_upstream	15	29	16	17	17	10	18	12	20	10
AAACTCTAGCGTCTCC	alt_1416_upstream	33	44	34	35	47	29	47	16	55	32
CGTAAGGGTCTCTCCA	alt_1416_upstream	13	27	21	19	19	10	24	22	28	23
AGAAAAACCTTCCCTG	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGACGCAAATTAC	alt_1416_upstream	25	21	33	16	33	16	35	22	26	22
GGCTCTAGAAACGAGG	alt_1416_upstream	0	0	0	0	0	0	0	0	0	0
GCATGCAGGGGGTTTT	alt_1416_upstream	3	0	3	0	0	5	3	2	0	2
CGTAAGGTTTTCCTTC	alt_731_negative	11	15	10	11	11	7	15	12	8	9
TTGGAGTCTGAGGTCA	alt_731_negative	29	31	27	23	34	37	37	31	40	21
CTGAATTAAACTTTAT	alt_731_negative	0	0	0	0	0	0	0	0	0	0
GGGATTACGATTACCA	alt_731_negative	30	43	47	36	82	36	68	26	59	24
TGTGTTCTTGCATTAT	alt_731_negative	11	25	11	19	20	11	28	16	19	17
TCGGACATTTTAATGC	alt_731_negative	27	66	44	39	67	46	54	43	90	37
TCAGTAGCGTCAGCTT	alt_731_negative	131	212	150	137	197	121	232	117	209	140
CAAACCTCTCACCCTT	alt_731_negative	13	28	16	16	24	13	29	12	28	11
CGCTGTATTCCGTCCA	alt_731_negative	29	82	63	37	88	59	103	66	102	53
GAGGGACTATGTCGGT	alt_731_negative	2	10	10	4	11	7	5	7	9	8
GGGGGTTAGGTGAAAT	alt_731_negative	0	0	0	0	0	0	0	0	0	0
GGCCCATTACTTCCCG	alt_731_negative	2	5	4	1	7	1	5	1	12	2
CTGGCGTGGCAACCGT	alt_731_negative	25	49	32	27	27	33	47	20	44	22
CGGGACTTGTCTCGGA	alt_731_negative	14	15	18	9	20	27	20	13	15	14
TCATCTTGACTAGCTC	alt_731_negative	128	279	177	152	281	130	274	132	290	120
CTCTTAGTGCACTTCC	alt_731_negative	0	0	0	0	0	0	0	0	0	0
TTTGCCTTGCGAGTTC	alt_731_negative	33	70	45	32	67	35	78	46	72	35
AGGTTAGCGCTGGAGA	alt_731_negative	56	48	66	55	68	54	86	38	79	48
GGCACTTCTTAAATTA	alt_731_negative	63	65	67	48	68	43	64	41	101	53
TTAGCGTGTTATAATG	alt_731_negative	1	2	0	0	0	4	1	1	0	1
GGGCTGCAGCGCGCGA	alt_731_negative	7	10	9	2	9	3	8	6	9	7
TTTTTCGGTTCTACGG	alt_731_negative	0	0	0	0	0	0	0	0	0	0
GGCCCAACCGCGGTGG	alt_731_negative	0	0	0	0	0	0	0	0	0	0
GTCCACTTTGGCCGTT	alt_731_negative	87	140	115	63	156	79	140	81	145	77
TTGCTGAATCCGCCTT	alt_731_negative	27	22	36	16	33	18	30	27	29	25
GACTTATGCTTATCTT	alt_731_negative	79	127	91	99	139	73	117	70	152	66
CCAGTGCCTTTAGTTT	alt_731_negative	5	39	4	8	28	10	34	6	52	5
GGGATTGTATCGTCAC	alt_731_negative	33	77	49	42	49	38	63	31	103	44
TATCCTTTTCCGGGCT	alt_731_negative	4	7	5	4	16	5	7	1	9	4
AGTGGTGCGGGCCTCG	alt_731_negative	13	13	20	9	17	11	21	10	19	11
CTTTATTTTTCCCGCG	alt_731_negative	32	22	28	30	41	21	44	22	47	26
ATTACACTTTTGGTGT	alt_731_negative	30	43	21	22	45	16	41	20	22	22
ATTTGACTGGGTTACT	alt_731_negative	33	61	46	30	59	26	47	29	54	32
GAAGATTTACTAGATT	alt_731_negative	8	5	8	2	5	2	4	4	7	4
GTCTGCTACGCGGATG	alt_731_negative	8	6	5	13	10	3	12	1	13	10
CGCCTTGTGAGTATCC	alt_731_negative	0	0	0	0	0	0	0	0	0	0
GTAACTTGCTCGCCTT	alt_731_negative	0	0	0	0	0	0	0	0	0	0
TATACCTGTCTGTCAT	alt_731_negative	16	12	5	15	14	9	25	9	30	10
TTTTCATACAAGTGGG	alt_731_negative	19	48	40	38	50	19	71	21	57	26
GCGTCCGCGGTTGAGT	alt_731_negative	11	12	10	12	24	10	13	16	12	13
TACATCCAGAAGGCTC	alt_731_negative	43	72	71	44	78	46	91	35	85	49
CGCAACTTCCATTGGA	alt_731_negative	77	121	97	83	134	66	156	89	146	70
TATCTTCTGTTTCGGG	alt_731_negative	107	160	114	141	150	99	157	107	192	94
GCCCTATGATTTGATC	alt_731_negative	9	37	17	13	14	13	26	16	17	17
TTGGAGGCTCATGTTC	alt_731_negative	10	20	19	8	17	17	23	16	22	15
TCGGTTAATATATGGC	alt_731_negative	0	0	0	0	0	0	0	0	0	0
GGCTATAAAGTGGGTG	alt_731_negative	8	13	14	11	11	7	10	12	12	9
GCTACTCTTATTTTGT	alt_731_negative	0	0	0	0	0	0	0	0	0	0
TATGCCTAGCAGTAAA	alt_731_negative	32	40	20	23	42	22	33	16	49	22
TTTTTGATGCCTGCTA	alt_731_negative	15	17	11	15	19	12	11	17	23	9
GGCCTATAGGTCAATT	alt_731_negative	9	20	16	14	12	8	15	11	14	11
TACGTATTGTTTCGCG	ref_4994_upstream	75	48	74	89	55	72	73	84	47	73
TTGCTGAAAGCCCGTT	ref_4994_upstream	34	15	37	26	17	30	16	24	14	25
ACTTCGACGATCGGCC	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGGCACCCATTGC	ref_4994_upstream	14	3	14	16	5	16	8	8	5	5
TTGAATTTCTCACAAG	ref_4994_upstream	135	70	160	141	74	143	49	124	74	119
TGGCTTGCGACCACCG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTGATCCCATGTCGTG	ref_4994_upstream	51	27	73	63	25	53	33	57	30	63
AGCGCATTAGCATCTC	ref_4994_upstream	1	3	6	5	0	3	0	6	0	3
TTTATCTCGCAGAACA	ref_4994_upstream	379	169	410	374	171	309	163	326	171	280
TCTAAATTTGGGGCGT	ref_4994_upstream	53	15	68	57	19	50	28	55	22	58
TCCTAAAGCGTGCAGC	ref_4994_upstream	31	16	31	43	28	19	33	25	34	42
TTGAGCAAGATATCAA	ref_4994_upstream	38	22	55	37	19	39	19	31	20	34
TAACCGGGGTCATTCT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
GTACATATGTGGACCA	ref_4994_upstream	78	26	75	63	32	49	29	60	30	39
TGAGTATTAACCTCAG	ref_4994_upstream	20	6	21	18	10	11	13	16	5	13
ATCTGAAGCGTATCGC	ref_4994_upstream	23	13	25	37	17	15	9	24	15	23
TCGTCCTCTTTATTCG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTGCACTACGTTA	ref_4994_upstream	21	19	54	33	20	43	21	27	24	36
CCTGACTCTCCCAGCC	ref_4994_upstream	0	0	1	1	0	1	1	1	0	1
TCCGTATCTGCGTTAA	ref_4994_upstream	15	8	29	21	10	16	7	10	14	12
CAAATCGGTAGCGTTC	ref_4994_upstream	137	95	198	162	111	132	80	155	110	118
CCTTGTTTAAGTGGCG	ref_4994_upstream	9	13	16	10	7	4	6	13	18	17
ACGAGCCATTACTAGA	ref_4994_upstream	7	4	2	7	5	3	2	1	5	3
AGATCCATCTGGACAA	ref_4994_upstream	23	23	46	27	18	25	16	22	21	30
GTTACGCCTACCCATT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CGCACAATTTGGGCGC	ref_4994_upstream	55	21	59	54	23	52	27	34	27	37
TCCCAACTCGTCACGT	ref_4994_upstream	216	105	250	234	112	177	113	210	83	223
GCTTCTGCATGGCTGT	ref_4994_upstream	5	10	14	7	2	6	3	11	4	10
ATGGCACCAGCAGCCT	ref_4994_upstream	16	11	21	32	11	18	11	21	8	17
ACCAGTCTGAGTCTTC	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
ACTTAACCCGCTCCGT	ref_4994_upstream	4	2	6	6	1	6	1	7	3	4
TAGGAGTACTATGTAG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
ACGCTCGGATTTCTTG	ref_4994_upstream	20	18	18	15	25	18	30	18	24	19
GTGCTTGTGACGAAGC	ref_4994_upstream	45	43	79	53	28	75	44	51	44	78
TATTATACCTCTTCTG	ref_4994_upstream	119	52	166	109	43	116	63	122	54	103
TATTTGGATTTCTTCG	ref_4994_upstream	10	4	10	19	7	13	6	13	10	10
GCCTATGATTCCCATG	ref_4994_upstream	99	54	115	99	65	85	57	87	87	81
CGTTGTTCGGCCACGT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTATCAGTTTATA	ref_4994_upstream	39	20	49	48	20	40	23	42	35	47
GGCGTCTGCTCATTCC	ref_4994_upstream	37	16	44	39	21	42	20	52	24	26
TACTTGGAGTAAAGAA	ref_4994_upstream	25	9	23	15	11	13	9	31	6	23
CTCCCTTAAACAGTCT	ref_4994_upstream	31	38	40	31	36	28	42	37	40	30
GAAGTCATGCTTATCG	ref_4994_upstream	74	31	67	55	36	66	30	63	41	55
ACTTTATTCTGTGGTG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TGTTACAGAAATAGCC	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATAGTTCAAACTCACA	ref_4994_upstream	57	27	85	72	40	54	22	76	25	66
GCTGAAGATTTTGTGT	ref_4994_upstream	27	11	41	24	12	40	16	36	20	25
TTGAGCGGCCTTGAAT	ref_4994_upstream	21	12	31	24	16	23	8	13	14	21
TGCAACTACTCGCAGA	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
ACTAATCCAAATCTCG	ref_4994_upstream	109	46	150	111	56	136	59	126	68	85
TTATCCCTGCTTAGGC	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGTATGTTCTCGG	ref_4994_upstream	21	11	28	19	13	22	14	23	16	20
CACATCTTTACTCAGC	ref_4994_upstream	68	71	96	101	78	69	62	83	81	78
GCGTTTGTCCTTTTTC	ref_4994_upstream	27	16	28	34	19	31	13	24	10	23
ACACCCGGTATTATAG	ref_4994_upstream	7	5	11	5	5	10	4	4	7	3
GAACCGTTTAAAACGC	ref_4994_upstream	50	19	66	40	26	39	28	34	27	44
TCAACGTAATGTCGCA	ref_4994_upstream	25	10	21	21	4	17	17	13	10	15
CTCCGGGTAAGACAGG	ref_4994_upstream	31	9	42	25	8	38	12	28	17	13
AATACTTGCAGCCTAC	ref_4994_upstream	16	5	23	15	12	9	9	22	13	9
CCTTTCCAGCGTTGCG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CATTCCGGCGCCGGAC	ref_4994_upstream	22	4	11	6	1	7	6	19	3	7
AAGCCACGTTCTTTGT	ref_4994_upstream	19	15	29	15	17	22	23	15	15	26
CCATTAGCAGCGTTCC	ref_4994_upstream	9	16	8	9	14	5	32	4	10	8
CTCTGAACATTGTGTC	ref_4994_upstream	45	51	52	48	30	39	31	44	23	47
TCATTTCGCGCATATC	ref_4994_upstream	17	14	39	27	14	27	18	25	19	35
GGATACTTGTATTGCA	ref_4994_upstream	8	4	16	9	7	4	4	8	5	6
CTTTCAGGGACCCATC	ref_4994_upstream	92	63	112	108	41	119	55	94	62	80
TTATGAAGGTTTTTTG	ref_4994_upstream	115	67	166	143	51	124	63	103	66	96
CTCGTGCCCAATACTT	ref_4994_upstream	28	20	28	20	14	25	6	26	15	23
TGTTAAAACACGTGTC	ref_4994_upstream	159	84	219	153	81	178	87	121	100	128
ATTCATATCTATTACG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TATCATTCCAGCAAGG	ref_4994_upstream	3	1	2	5	0	2	0	1	2	1
TTGTTCACATCTCCGT	ref_4994_upstream	91	34	126	119	49	87	34	95	50	77
TTCGGCGAGTGCACTG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTTACAATACTTTTGC	ref_4994_upstream	34	18	58	35	21	29	18	28	29	35
CGGCTCATCCCAGTTG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
ATCGTGAGTGTTGCTT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTTCGCGTCACTA	ref_4994_upstream	7	4	8	7	5	3	2	7	1	11
AGCTTAGTCGCGCTGG	ref_4994_upstream	163	61	198	143	72	122	72	139	69	123
CGACCTAGCATTTTTC	ref_4994_upstream	10	11	12	19	4	12	4	13	14	16
TTTCCCTATGCGGTCA	ref_4994_upstream	51	28	72	42	24	52	32	64	26	47
AGGAACTTCGGCGCCT	ref_4994_upstream	56	28	77	61	28	52	36	47	25	48
AACCCTTTCGCTATTC	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
GTCCTACTAAGGCTCC	ref_4994_upstream	22	23	27	23	19	14	23	20	22	35
CGAGACCTGGGAAATT	ref_4994_upstream	15	13	16	16	5	10	5	7	12	14
CGCCTCACGACGGATC	ref_4994_upstream	16	9	12	18	6	16	7	9	10	13
CTTGTCCGTGTCTTAT	ref_4994_upstream	15	13	10	20	4	19	9	8	11	15
TTTTCATGTTTGTTCT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CATACTCTTGTCCACC	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CATCCCCATAGGTTCC	ref_4994_upstream	29	10	33	22	13	24	22	11	18	26
TCTAGTTCATGTGCTT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
AAATGGAATTACTTCG	ref_4994_upstream	42	19	44	23	18	27	18	25	28	30
GCTACGTGCTTGTCGT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTCGTGGCTTTAT	ref_4994_upstream	70	35	90	83	44	82	37	70	44	69
AGAATGTATCTACTGA	ref_4994_upstream	96	49	117	109	45	111	60	101	68	73
TTGGCTTTCGCATTAT	ref_4994_upstream	79	36	107	81	44	85	25	92	48	71
CCGTCGCGATGAGTAC	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TATACTGTGATACGGT	ref_4994_upstream	48	22	54	52	31	39	27	35	24	33
CCGTCACTATTGCTTC	ref_4994_upstream	52	41	76	69	33	49	45	52	49	43
GTGGTCTTCCTTTGCT	ref_4994_upstream	1	3	2	0	2	0	2	1	2	0
AACCGGCGGTATTAGA	ref_4994_upstream	43	38	48	56	54	45	52	56	47	49
GCCAAGGCAGTATGGT	ref_4994_upstream	5	0	4	3	2	2	1	5	8	6
TATATATAACCTTTTC	ref_4994_upstream	58	23	105	74	33	60	23	55	28	53
GTCATGACTAAAAACT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGTCCCGGAAGAT	ref_4994_upstream	4	0	8	7	3	7	4	7	2	5
CTATTCCGGGAGTCAC	ref_4994_upstream	16	11	32	16	19	12	19	22	13	15
AACTCAGCCATAGTGC	ref_4994_upstream	35	19	36	22	31	34	20	47	33	32
TTCCTCTCTACGCCGT	ref_4994_upstream	42	22	50	44	26	35	27	45	37	30
TGACCCCGGTCTTGGC	ref_4994_upstream	20	5	18	26	8	17	9	17	17	12
TGACTTTTTATTCAAG	ref_4994_upstream	1	0	2	1	1	3	1	5	2	1
CGCTCGTTCGTGACCA	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCTGACTACACTC	ref_4994_upstream	89	78	86	94	83	63	57	53	57	36
ACTACGCTGCTGTTAC	ref_4994_upstream	122	86	139	156	76	128	63	151	91	104
TTTGTCATTAACACAC	ref_4994_upstream	20	8	22	26	13	22	6	16	11	10
CCTTTTCCATGACCGT	ref_4994_upstream	44	38	67	60	44	39	47	62	51	41
GGAAAGTCTCCGTTCA	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
CTTTGATGTTGGGTAA	ref_4994_upstream	15	4	3	2	7	8	7	8	8	10
GAATTCATGTTTTGAA	ref_4994_upstream	41	32	48	42	35	40	30	53	30	36
CGTCACGTTGGTTCTT	ref_4994_upstream	130	109	129	151	81	120	90	118	99	128
TAGCTTCTTGTAGGAT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TAGTCAGCCTCTTCGT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
GGTAACAAGACGGTTT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TGGGGGCTTTTGGTAA	ref_4994_upstream	35	16	52	31	20	53	31	37	25	19
TGTAGTATACTTACTG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
GATAGCATGGCTGATA	ref_4994_upstream	21	11	31	28	9	29	5	19	20	14
GACACGCTGTAATAGG	ref_4994_upstream	32	12	31	21	18	38	11	34	13	22
ATCACAGCCGTGTGTT	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
TAATCGTCGTCTTTTT	ref_4994_upstream	70	25	93	94	24	60	23	80	35	80
GAATATACCTTTTAGC	ref_4994_upstream	57	42	106	74	44	59	41	57	36	62
TGAGGCCATTCTACCA	ref_4994_upstream	94	45	123	115	56	105	52	106	72	64
TCATGCTGCTGCAATG	ref_4994_upstream	83	47	93	65	25	60	41	67	45	60
GTGGGCGACTCCGTAC	ref_4994_upstream	42	16	27	33	13	32	12	28	23	42
TATTAACAGTAAGTCC	ref_4994_upstream	100	36	142	112	41	84	40	79	47	99
TATGTTCCAACTGCGT	ref_4994_upstream	16	11	25	20	12	24	16	16	8	15
TACCATTCCAATAAAA	ref_4994_upstream	122	61	169	158	70	135	64	128	67	126
GTATTACTTTTTGGTT	ref_4994_upstream	102	57	107	102	51	96	60	104	43	75
GATTCAGATTGATATG	ref_4994_upstream	0	0	0	0	0	0	0	0	0	0
GCATTTCCCCGATAGT	ref_4994_upstream	7	3	3	4	4	3	6	4	5	5
CGCAGCGTAGGTATGC	ref_4994_upstream	10	30	12	18	27	5	30	1	37	3
TTTTGGTTTTTGAAGG	ref_4994_upstream	161	77	193	158	100	155	74	127	76	149
CCACTGTGAGTTACTT	alt_4170_upstream	4	8	9	9	7	6	9	7	2	6
AAATATTAAACGAGTA	alt_4170_upstream	125	71	134	145	63	98	83	117	71	104
TAAATCTGCCAAGAGA	alt_4170_upstream	106	89	155	137	90	119	90	98	94	142
CTCCTTAATCTCTATG	alt_4170_upstream	312	290	434	371	245	308	294	304	279	302
GCTATTCGCGGATCAA	alt_4170_upstream	50	40	56	49	32	43	34	52	44	38
CTCTGTGTCCCGCATC	alt_4170_upstream	16	5	13	13	13	11	15	4	5	16
CGGACTTGTCGGGAGT	alt_4170_upstream	30	30	59	41	37	27	25	26	21	29
TCATAGAACTTGATTT	alt_4170_upstream	8	14	22	7	18	9	20	13	20	7
AAGTTTTGTCTGCCGC	ref_4170_upstream	49	30	55	42	21	46	26	45	43	35
CCTTGAGAATCTTAGA	alt_4170_upstream	20	11	30	28	13	15	16	23	10	19
TGCAGTATTGACTTCG	alt_4170_upstream	67	67	90	74	60	64	89	65	54	54
CCCGCATTGTCACTGT	alt_4170_upstream	59	47	71	45	51	60	43	49	51	49
CATGGTGGTAAGCTTT	alt_4170_upstream	212	173	260	264	169	240	156	228	149	203
ATATTATGCAACATTA	alt_4170_upstream	75	56	97	65	62	72	48	54	44	62
GGAGGTCGTTACAGGG	alt_4170_upstream	114	74	136	138	93	134	71	99	91	112
ACTAATGCTCTGTAAG	alt_4170_upstream	36	22	43	33	24	40	32	37	31	20
GGCCCGGTGGTCGTAT	alt_4170_upstream	171	125	173	150	119	142	106	127	125	121
ACCATTCTCCAGTTAT	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
TTACTACATGTTGGTG	alt_4170_upstream	2	5	7	3	4	9	5	4	4	3
CAAATCGAGACTCTAC	ref_4170_upstream	73	56	69	74	40	71	57	49	44	67
GATTGCATTTGGCATC	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
ACTCCTAGCGTGTTGA	alt_4170_upstream	6	4	7	10	2	3	2	5	5	5
TAATTAGGTGGTATGG	alt_4170_upstream	20	16	27	31	22	10	17	23	19	24
AACCTTAGGTACCGCC	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTGAGCGTTATCC	alt_4170_upstream	63	53	87	74	39	76	51	64	55	81
TCCTGTTCTGGATGCC	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
ATGTTAAGCTATTTCG	alt_4170_upstream	23	16	19	19	11	9	14	6	16	18
ATTGGTGCCGCCTTGT	alt_4170_upstream	26	14	20	16	11	17	9	22	13	14
CTCTGTGGACATCATC	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
CGTATGCTCGTGGGAT	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
AGAGGTTTGTTGCTTC	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
ATTAATATTTTAACCT	alt_4170_upstream	185	128	263	214	131	208	116	174	154	187
GCCTGGCTTTGTTAGT	alt_4170_upstream	3	2	4	4	2	2	2	2	3	2
AGCGCTGGCGAAGTGG	alt_4170_upstream	27	18	38	32	18	17	27	23	23	17
TAACCTACTTTCACAC	alt_4170_upstream	4	4	3	6	4	4	4	3	5	4
GTGTTTTCTTGCGTAT	alt_4170_upstream	50	43	55	43	52	40	37	49	39	50
GTTAAGATCGCTGGAT	alt_4170_upstream	15	10	15	23	3	11	15	15	10	21
AGGCTCCTAAGTTGTT	alt_4170_upstream	16	16	26	38	18	29	27	35	30	18
GGGCAGTGAGCCCACA	alt_4170_upstream	25	20	29	22	14	29	29	21	25	19
GAGGTTCTCTCTTCCG	alt_4170_upstream	59	38	43	45	44	42	32	45	36	43
CTGCCTTTAAGTTTAT	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
TCGTATCTACACACTC	alt_4170_upstream	37	27	31	38	34	33	31	32	18	27
TGTTTGCCCTGGAAGC	alt_4170_upstream	69	48	51	62	39	67	43	61	39	65
GTATAATATGTAATCG	alt_4170_upstream	5	2	5	2	5	7	1	6	3	5
GCCATTTACACCATGG	alt_4170_upstream	250	150	292	269	171	254	174	262	160	222
ATAAGTAAGGATAGCG	alt_4170_upstream	7	5	17	7	7	12	7	12	9	11
CTTTGTGGTATTGTTA	alt_4170_upstream	98	85	104	73	65	94	81	82	77	77
TGTTGATACGCTTACT	ref_4170_upstream	96	82	119	115	113	125	90	107	79	118
TCACCTTTTTCCGACG	alt_4170_upstream	69	74	89	85	75	85	88	67	105	64
CTTGTTTTGTACACCT	alt_4170_upstream	105	97	116	112	90	97	96	79	108	104
GTCTGTACGGCACCAC	alt_4170_upstream	52	120	62	46	115	42	115	49	120	53
CCTATGCGTATTTGCG	ref_4170_upstream	43	38	62	43	35	36	23	50	35	53
TTAAAACACCCACTGG	alt_4170_upstream	63	50	75	78	66	69	61	55	65	58
CTAGCTGGTATTCTTC	alt_4170_upstream	11	12	14	12	8	10	12	13	18	14
TGTTTCTCCTCGAGTG	alt_4170_upstream	43	31	55	39	35	45	34	42	33	35
CGCCCCAGAGGTCCTT	alt_4170_upstream	57	29	70	47	31	57	43	46	29	49
TATTGTCCATCCAATA	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTTTGCAGTTCTG	ref_4170_upstream	125	112	144	134	84	146	110	124	104	135
TGTAAGCCACTATACG	alt_4170_upstream	72	76	71	68	47	59	61	55	64	68
ACGGGTCTTGCATGCC	alt_4170_upstream	21	53	16	16	39	9	54	16	42	18
TGTTCCGGCGTGGCGC	alt_4170_upstream	24	32	24	34	34	31	27	33	24	28
TAATAGATTCGTCCCA	alt_4170_upstream	64	30	64	59	35	69	38	42	32	60
TATGAAGAATTCGGTG	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
TACCATTGTGAACCGG	alt_4170_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGCGCCGGAATCG	alt_4170_upstream	154	131	184	184	109	182	147	154	127	119
ACTTGGCTCCCCCAGT	alt_516_fdr	0	0	0	0	0	0	0	0	1	0
GGCTAAGGTAATGCAT	alt_516_fdr	20	15	11	16	20	7	18	9	12	17
GCTCCCTCGTCTGTCT	alt_516_fdr	1	1	1	2	1	1	2	1	2	0
TGGTCTGCAACATTCC	alt_516_fdr	46	44	54	36	34	46	51	66	50	47
TTTGTCAGGCCCTAAT	alt_516_fdr	170	171	198	161	156	179	189	124	260	137
CCATTGACTATACATG	alt_516_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTGAGTTCATTTT	alt_516_fdr	8	7	5	11	7	11	5	6	10	10
TGGCACATTCGTTCTT	alt_516_fdr	1	2	6	2	4	0	7	2	1	2
CTCCTTACATCTCTCT	alt_516_fdr	95	89	69	50	81	57	94	52	83	81
GGAGCTATCGGTGCGG	alt_516_fdr	52	81	97	70	76	86	97	74	100	75
GGAATCATCTTTACAG	alt_516_fdr	52	36	47	33	34	40	32	28	38	31
CATCGGTACCCTGTCC	alt_516_fdr	0	0	0	0	0	0	0	0	0	0
CGTACTTATTTGACCG	alt_516_fdr	117	129	108	100	125	102	139	98	145	91
GTGTTTCGCGCCCGTC	alt_516_fdr	100	116	126	84	99	93	114	83	140	102
CCTGTGGATATCGTTA	alt_516_fdr	4	22	7	8	32	11	21	11	24	8
GGTCGAATTTTTCTCG	alt_516_fdr	46	46	56	37	51	48	59	39	51	27
ATTATGTTGTTACGTT	alt_516_fdr	38	32	45	31	32	52	33	41	39	31
GAATCGTGCGTTGTTT	alt_516_fdr	20	28	27	14	21	16	31	18	24	24
GTTATCGCACCAGTCG	alt_516_fdr	7	4	6	7	4	6	20	6	12	8
GCCCGCTTGAGCCATA	alt_516_fdr	15	16	13	10	15	11	16	17	22	6
TAAGCTCATCGCGATT	alt_516_fdr	46	43	38	31	38	39	52	40	39	36
TCCACCTCATTGTACG	alt_516_fdr	16	10	17	13	12	6	11	4	19	11
TATTCGAGAATCTAAA	alt_516_fdr	0	0	0	0	0	0	0	0	0	1
TGTTAAAGGTGCACTT	alt_516_fdr	15	14	23	17	14	16	20	11	12	14
GATGTGATCGGAGTCT	alt_516_fdr	2	4	6	5	4	5	1	3	1	4
AATTGGCGTAGTAAGC	alt_516_fdr	44	63	57	57	67	60	77	42	74	39
GGTTACATGCCGCCCT	alt_516_fdr	7	2	5	6	3	7	5	1	2	2
GATCGGGTCATTTACT	alt_516_fdr	21	14	26	17	27	12	18	11	19	19
CCCGGGTAAGTGTAAG	alt_516_fdr	174	231	228	166	260	169	280	185	269	145
ACTGTCTCTGTCAGGG	alt_516_fdr	53	36	54	44	56	37	50	37	57	39
GATGGTCACCAGTTTC	alt_516_fdr	13	16	19	9	10	9	13	14	19	13
AATTCGTCCTTCTTTG	alt_516_fdr	36	36	40	29	31	36	30	30	51	32
GGGTTTCGCAACTCCA	alt_516_fdr	36	55	38	29	53	36	55	22	46	23
GGCTGTTGTAGCGTTT	alt_516_fdr	7	6	7	2	3	7	8	1	7	9
ACCGTAGTACTATGTA	alt_4676_missing	42	97	57	39	71	58	85	56	84	54
TGGATGATCCTGCCTG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
ACTCATCTGTGACGGC	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TCCATACGCCAAATCT	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
AGTGTCGTCCCTGCTA	alt_4676_missing	1	5	2	1	2	0	4	4	5	6
ATAGCTTGACGGCACT	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
CTGGCCTTGGCCGTCG	alt_4676_missing	2	12	1	4	6	1	10	3	7	5
CATGCTTGTCCGGCGG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TCTGGCTGTGTAATGT	alt_4676_missing	28	27	23	17	35	23	45	16	30	18
CTCGCCACTACCTATG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
AATTAACGTGGCGGTG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TACGTATGGCATAGCC	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TATCATGTTCTTAAAT	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TCATTTAGAGTAAGGT	alt_4676_missing	15	44	14	21	31	16	26	17	46	12
GGGCCCTACCGCCGCT	alt_4676_missing	4	12	9	13	14	9	11	8	16	7
CTTGTGCCAGTTACTA	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
CAGCCGCTGACCTATT	alt_4676_missing	2	11	8	4	12	2	18	5	4	5
CGGTATTGTTGATAGA	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
CTACGTCATCGCATAC	alt_4676_missing	34	47	39	35	35	38	42	16	41	27
AGTGCGTCCAAGTTCG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TATAACCGTTGGACCT	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
GATGGTTTCCCTATGG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
GTCCTTGGAGAAGAGC	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
AGCCCCGCACGGAGGC	alt_4676_missing	54	56	70	41	52	51	61	42	85	39
TACCATCGTGCTGTAA	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TTAGTCGGGTTTATAG	alt_4676_missing	21	38	27	27	38	32	49	29	49	28
TTCAGAGCACGAGCTT	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TCCTCTCCTCGCTCTG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TTTTAAGAGTTCAGGA	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TTTCCGTGGCTTGATA	alt_4676_missing	26	39	41	36	55	34	43	25	49	34
CTAAGTCCGATTTTCG	alt_4676_missing	31	50	46	30	53	25	37	31	51	25
ATGGACGGCAATAAGT	alt_4676_missing	48	117	82	60	113	64	119	61	136	61
TAGTCTAGGACTCTGT	alt_4676_missing	18	17	12	21	26	4	23	11	18	12
GTCCGATCTAGAACAG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
CTAGTTCCTGATTTAC	alt_4676_missing	77	166	125	79	186	99	187	95	207	101
ACTTGGATTCAACTAG	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
ATATTGGGTTCAGAAT	alt_4676_missing	28	35	24	27	37	19	45	17	33	18
TGTAACAAATCGGGCT	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
TTCGTCCCCACAGATG	alt_4676_missing	24	42	23	24	31	27	22	21	39	23
TCCAGCCCGGGATAAA	alt_4676_missing	0	0	0	0	0	0	0	0	0	0
GTCAGGTTCGTCAAAT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TCGGTACGTCGGCGCA	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TAGTGACCTAAGTCAA	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CTAGGGCTGTTGGATC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CGTACCGCGGGAAACA	alt_2542_missing	3	3	5	1	0	5	2	5	5	2
GGAACTGGAGTCCTCC	alt_2542_missing	142	109	166	136	76	118	85	132	104	111
TGCAAATACATTCACT	alt_2542_missing	9	8	5	13	5	9	7	10	8	11
TACGGGACAATATTCT	alt_2542_missing	78	58	82	85	60	73	53	80	61	60
TAGGGGGCGTAGCTCA	alt_2542_missing	22	9	20	17	15	12	18	21	18	12
TAACACATTCCACTTT	alt_2542_missing	49	16	36	34	26	30	36	46	34	28
ACGACCTCTGTTACCG	alt_2542_missing	75	49	65	65	48	69	51	68	57	51
GCAACAATTGGCAATG	alt_2542_missing	13	11	17	8	6	12	15	12	8	20
AGATGATCATCAAAAA	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
GAGTTTTGGTAGTGAC	alt_2542_missing	23	22	23	11	11	18	11	18	14	14
TTCCATCGGGACGGTC	alt_2542_missing	15	9	12	10	5	10	8	11	4	7
GCCATCCACGCATGCT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTAGATAATGGTCATG	alt_2542_missing	26	24	42	37	16	34	28	26	16	32
GCCTCGCCTGCATACC	alt_2542_missing	17	19	24	27	22	13	12	26	13	18
GGCATATTTAGAAACA	alt_2542_missing	34	19	28	55	15	27	21	21	26	37
CGCTGCCTTATAGGTC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
GCATTCGTCCGCAATT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
ATTTACTATACTTGTT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
ATTTTACCCTAGTGTT	alt_2542_missing	39	34	43	38	28	45	42	31	38	29
GATGATATCATGTCAG	alt_2542_missing	28	27	31	49	23	29	13	45	24	25
TCTGCAACTAACGGTT	alt_2542_missing	91	60	107	86	60	72	67	62	59	67
TACTTTTTCTGATAGT	alt_2542_missing	31	12	39	42	23	35	25	27	24	23
GCGCGCTTGATGGCGT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTGATTAGTTATGCGT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CTATTGGTCTAGTATG	alt_2542_missing	10	3	10	5	5	5	13	9	6	6
CGTAAGAGCCCTCCGC	alt_2542_missing	30	24	39	32	31	28	35	32	34	33
GCAAGGAGGCGTCCCC	alt_2542_missing	11	9	17	20	12	17	9	9	9	14
GGCCTGAGTAATAGTC	alt_2542_missing	71	29	87	102	29	59	25	57	35	62
GCTATCTCGCCGTGAT	alt_2542_missing	17	7	11	18	10	7	9	9	12	11
TATGTTTAGTTTATAG	alt_2542_missing	13	13	19	18	4	6	9	21	11	8
TCGGTAGTGCGGCATT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TATTTCTCTTTTAGAT	alt_2542_missing	8	5	22	15	5	8	7	16	14	11
GTTCTTTTACGTAAGC	alt_2542_missing	43	44	57	48	28	44	32	49	33	43
GAAGCGGTTTCAGTGT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
ATACATAGAACCCCTG	alt_2542_missing	185	118	196	168	116	148	128	159	112	130
GGTGTGTTGTAAAAAA	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
ATCGCAGTTAGGATTT	alt_2542_missing	19	19	25	25	20	25	27	22	19	27
TACGGCAATTCTTTTA	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CAGTTCGATGGGCGCC	alt_2542_missing	25	24	21	28	16	24	21	22	16	31
CACGGGTCATATCGGG	alt_2542_missing	15	12	21	12	15	9	15	11	17	13
AGCTAAAATCAAATGG	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTCCTATAACCA	alt_2542_missing	29	30	33	22	22	17	25	20	43	23
ACAACTTGTGCGCACC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CGCGGCTCCTAATCTA	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTGCGAATCCGGGCTT	alt_2542_missing	27	26	30	39	15	33	23	33	26	38
AAATGCTTCCAGTTGA	alt_2542_missing	8	9	29	22	7	11	8	12	16	16
TCTTTTAGAGAAATAA	alt_2542_missing	6	6	13	3	7	8	11	5	5	6
ATGGACTACTTATGTA	alt_2542_missing	8	9	9	11	3	7	8	11	9	6
GATGCAACTTTCTTAC	alt_2542_missing	1	1	0	0	2	3	1	3	0	1
GGCCAGATTCGTCTCC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TGTATTCTTCCGGGCT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TGCGAAACGATGTATA	alt_2542_missing	1	4	2	10	6	3	4	4	0	9
CCAGGGTATTATCAGG	alt_2542_missing	2	1	3	5	4	2	6	2	4	3
GCACTTTTACTGGAGC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTAGGCTTAATGTAAT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
ATATGAAATTGTTCTC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTTATTTGTAGTCAGA	alt_2542_missing	8	9	14	4	14	10	12	8	11	8
GTGTGTACCCGCTTCT	alt_2542_missing	27	11	39	19	16	25	15	22	10	26
GTATGGGTGATGTCGG	alt_2542_missing	8	5	8	10	8	8	8	15	7	11
CATTTTATTCGGAATC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTTTTAATGGTTAAGT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTTTGATGGCTATTCT	alt_2542_missing	28	10	27	35	16	27	18	27	19	32
ACCATTTTATACGTCT	alt_2542_missing	23	12	20	24	24	19	15	20	28	20
CAAGTGGAATTCTTTG	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
GAGTCTTTCCGGTTTC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CTTAAGCTACACTAGG	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTAGAAGTTCCG	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
GGGTGGTGGTTTTAGT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
AGTTGAACAGCGATTA	alt_2542_missing	5	5	11	7	3	5	4	8	7	2
CGGGAATGGGCTACAT	alt_2542_missing	11	4	6	7	11	9	6	13	4	5
CACCTGTAGACGCACT	alt_2542_missing	57	71	94	74	56	46	67	62	57	68
TCATGGTGATACTCGT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TCCGGCATGTCCTTTT	alt_2542_missing	45	30	61	37	30	34	24	50	29	41
TTTAGAGATTATATGC	alt_2542_missing	5	11	14	10	7	10	7	12	15	9
AGTGGATATAGCATCG	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TCGCGGTCGGCACCTC	alt_2542_missing	56	79	71	54	68	69	72	54	74	47
GACGGCCCCCTGGCAC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CAGGTATTCGCACGTT	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
TTCCGCGGTGCTTTCG	alt_2542_missing	0	2	1	0	2	0	1	3	1	0
TCGTCAGTTAATTTCG	alt_2542_missing	20	7	19	20	13	9	20	15	18	8
TCTGGCTAGCATAAGC	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CTTTTTGTTGTTGATT	alt_2542_missing	28	23	30	37	27	33	18	26	28	20
CCTGAGTATGGATTGT	alt_2542_missing	2	5	2	2	1	1	1	2	1	4
GGAACGCCTGCGTACA	alt_2542_missing	0	0	3	4	1	1	0	3	3	1
GTCTTTCTCTGCACGT	alt_2542_missing	3	5	7	8	2	10	9	11	9	4
CTTTAGTCGGTCAGTA	alt_2542_missing	0	0	0	0	0	0	0	0	0	0
CCCACCTTAAATTCGA	alt_1042_negative	1	2	0	2	5	1	0	1	5	1
TTTGTCACAAATCGGG	alt_1042_negative	21	45	24	25	49	40	56	27	56	35
CGTCACGCCCATTGAC	alt_1042_negative	8	39	20	13	44	15	30	9	36	10
ATATCGGAGTACGGGC	alt_1042_negative	2	15	7	9	7	8	13	5	11	1
ATTTGACTAAAGCGTT	alt_1042_negative	25	65	45	42	56	23	59	29	56	22
GGGACCTAATGTCAAC	alt_1042_negative	33	64	30	25	68	31	62	28	62	32
GAGTGTATCGATACCT	alt_1042_negative	13	13	12	10	18	12	16	10	15	4
TTTTGTTCATGCTTTG	alt_1042_negative	41	83	39	34	69	35	73	30	79	41
TGGATATTATTGCACA	alt_1042_negative	13	48	24	14	25	25	42	10	38	13
CTTCTGTTTGACGTTT	alt_1042_negative	1	0	0	0	1	0	1	0	1	0
TACTCTGTTGGTGCTA	alt_1042_negative	27	50	35	24	43	19	47	11	51	34
TTCGCCTAGAGCGGCG	alt_1042_negative	20	35	25	29	42	10	29	11	49	12
CGTTTGCTTAACAGCA	alt_1042_negative	14	29	24	16	29	18	25	13	27	19
TCACTGCAAAACATTG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TCAGTTGTGGTGTGCG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
GGGCCTAAGCTCTTTT	alt_1042_negative	5	0	1	8	5	2	8	2	3	1
CGGGGACTATGGAACA	alt_1042_negative	11	13	13	14	23	12	25	10	25	15
ATGTCTCGACTGTTTA	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
CCTTCGGTCTGGCCGC	alt_1042_negative	19	37	20	14	40	7	39	12	55	9
CGCACTTTTCGGATTA	alt_1042_negative	3	6	3	0	12	8	12	2	6	5
GGTACCCTATGCCAGT	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TCAGACCTCATCCTCA	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
AAGTTTCTCTATGTTG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
CGCTTGTACCTGGTTA	alt_1042_negative	4	4	2	4	3	5	4	2	6	1
ACATTTTTTAAACCTG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
AACGGGTCCCGTACCG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
CTGTTAACGTATCGCA	alt_1042_negative	1	3	5	7	3	3	7	3	4	3
CACGTGACTACTTTCT	alt_1042_negative	6	18	7	8	16	3	7	8	9	11
ATCCTGAGATGTATCT	alt_1042_negative	5	13	13	9	13	12	8	10	15	10
GTACATCGATTACTGT	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
GTACGCTGGCGTTTCA	alt_1042_negative	54	84	57	51	96	40	113	39	101	46
TCCTATATGAGACCTT	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
GGGTACCGCATCCGTC	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TGGTTCGATTGGTTTA	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TGACGTCCCAGTTCAG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TCCTTCTTGGTCGAGA	alt_1042_negative	7	13	13	10	22	13	21	10	16	10
GGGATCACTTGAAAAT	alt_1042_negative	9	5	7	10	7	4	8	5	9	2
CGGGTCAGCGCCCTTG	alt_1042_negative	0	1	2	1	2	3	4	3	0	2
GTGTTTATACAGCAGA	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TAGCGTAGATTGTCCG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
CGTACGTATGGATCTA	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TGTTGTGAACGATCTG	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
TTATGAAAATGTTGGC	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
CAGTTTATTATGGGGG	alt_1042_negative	4	10	6	12	7	1	10	8	18	4
GTCGATCTCATAATTT	alt_1042_negative	12	21	13	9	22	10	14	7	21	3
TTTTTATTCTTACTCC	alt_1042_negative	29	45	32	24	46	27	44	29	49	21
TTACGTACGTACTGTT	alt_1042_negative	14	21	14	15	29	15	37	13	30	19
TTGCGTAGATTGTCCG	alt_1042_negative	11	21	12	13	9	10	20	7	26	13
GAGGCTCTGCTACATT	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
GATTCTTACTCTCAGT	alt_1042_negative	2	4	4	0	4	3	2	0	0	1
CTTTGCATCAAGGGTT	alt_1042_negative	2	4	3	2	4	3	5	1	6	1
GCAACGCGATTAGCTG	alt_1042_negative	0	0	0	0	0	0	2	1	4	0
TCTGTCATTTATGTGG	alt_1042_negative	35	64	41	30	67	27	62	31	53	30
GGGGCGCTTAGTAAGA	alt_1042_negative	0	0	0	0	0	0	0	0	0	0
AGGAAATCGTGATGGG	alt_1042_negative	13	17	14	13	13	9	19	8	9	11
TGCCTCGCTACGGGCG	alt_1042_negative	31	38	35	27	33	20	34	12	45	20
TGGCGTGAGTTCTATA	alt_1042_negative	7	26	13	11	24	10	29	6	24	11
CCACCCTTTGGCGCTA	alt_1042_negative	7	11	7	6	8	7	10	11	20	5
GTTAGTTATCTTATCT	alt_1042_negative	5	8	5	2	6	4	7	3	10	6
ACTCATTAACATTCCC	alt_1042_negative	7	20	13	13	23	10	22	10	22	4
TTCGCGGTGGTAGTCG	alt_1042_negative	1	2	1	0	2	1	2	0	1	2
TGATGCAGAGGTTTTT	alt_1042_negative	0	0	3	1	0	2	0	2	2	5
GGCTCGAAATTCAGGC	alt_1042_negative	10	23	22	8	22	13	22	12	12	17
TGACGAATTGGCTGGT	alt_1042_negative	4	12	9	5	13	3	3	4	11	4
ACCGAACAGAGTACGC	alt_1042_negative	40	58	38	60	55	32	81	32	80	35
CCTGACTAGATTCTGT	alt_4769_missing	0	0	0	0	0	0	0	0	0	0
TATTTGCCAGTAAGAG	alt_4769_missing	15	11	19	11	25	6	21	22	12	10
CGCCTCAGCAAACTCA	alt_4769_missing	22	42	27	29	45	24	45	26	47	19
TTTTTGTCTTCCCCGG	alt_4769_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTGTCTTCCCCG	alt_4769_missing	1	4	3	0	3	1	2	3	5	2
GCGGTCTACAGTTGCA	alt_4769_missing	23	41	15	28	41	22	28	23	38	21
AGTCCGGTGCGATCGA	alt_4769_missing	16	22	12	9	17	16	24	6	29	13
GCTCAGTGGATGGAAT	alt_4769_missing	4	6	11	9	11	7	13	13	8	5
TGTGGAGCCAAGGGGT	alt_4769_missing	0	0	0	0	0	0	0	0	0	0
AATATCGCTCGTGTCG	alt_4694_missing	6	14	9	8	19	6	11	7	9	2
GCCGTCGGAATACATA	alt_4694_missing	3	11	4	3	2	5	5	4	10	3
CATGGTTCGCTTGCCC	alt_4694_missing	2	8	0	1	3	6	0	0	4	7
ACGAGCAAGGACATGC	alt_4694_missing	0	2	1	2	4	1	2	3	2	2
TGCGTTAGTACGCAAC	alt_4694_missing	0	0	0	0	0	0	0	0	0	0
TCCGTGTGGTGAATCA	alt_4694_missing	5	15	6	5	11	6	10	5	13	5
ACCCGTCGCGTGTGGC	alt_4694_missing	16	28	14	23	36	14	36	16	30	5
ATTGCTTTGGTCATTA	alt_4694_missing	0	0	0	0	0	0	0	0	0	0
GGCGACATTTTTCTCT	alt_4694_missing	26	33	38	27	27	32	22	18	30	29
GTTCCTCGTACGTTAC	alt_4694_missing	0	0	0	0	0	0	0	0	0	0
TGCACGTCATGATGGT	alt_4694_missing	0	0	0	0	0	0	0	0	0	0
GCGTTTGTTCCCCCGT	alt_4694_missing	17	24	16	22	23	11	22	8	23	16
GGCTGATAGATTTGGC	alt_4694_missing	4	15	9	9	9	8	13	7	21	7
TGCAATGTGCGGACTA	alt_4694_missing	15	7	12	15	26	11	18	8	21	9
GTAATCTCTGTCAGCT	alt_4694_missing	13	18	13	9	23	9	20	7	15	15
TAGATTACCATTCGCG	alt_4694_missing	2	2	0	1	1	2	3	1	4	2
GCTAAATTTTACGTAC	alt_6003_new	3	33	9	5	20	3	13	2	31	2
GGCTGCACGCCAAGTG	alt_6003_new	23	65	30	28	59	22	57	24	57	24
AACCCCTTCACTGGGC	alt_6003_new	2	13	3	1	15	1	13	3	27	2
AAAGTGCGATTAATTA	alt_6003_new	44	59	53	37	70	39	53	30	67	27
GCGCATCATAGAATTC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
AGGTTAAAGGAAGATC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TACTAATCGTGAAGCA	alt_6003_new	5	11	12	8	17	9	13	7	25	8
ATTGCTGTAATAATCA	alt_6003_new	186	293	253	223	308	206	314	211	345	188
TTGTGTCCAACACTAT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
ACTATGGGCAGTCGCG	alt_6003_new	14	10	13	7	11	5	23	7	15	7
CCACGATGTATTTTTT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GGTTATACTCAGGTAG	alt_6003_new	44	77	64	51	110	35	82	35	78	55
TGTCATAATAATCGGT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CCGGTAGGCTTACTGC	alt_6003_new	1	16	1	0	20	1	19	0	15	0
CAACGTGCATATAGCA	alt_6003_new	61	94	64	73	89	57	101	49	108	41
AGTCAATTACGGGAAC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CTATCCAAGATCTTGC	alt_6003_new	11	17	9	6	13	6	6	9	11	9
GTGGTTTCTTTGCTTC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CAACGATGCGCGTCCC	alt_6003_new	10	16	15	7	9	7	21	10	14	8
TATGCCCCATTGTGGT	alt_6003_new	0	3	3	0	0	2	2	2	3	0
TGGATCACGTTTTTTC	alt_6003_new	16	15	11	14	16	11	15	13	18	10
GCAGAGGTTTCCAGGG	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TATCATGGCTGCGCGA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CAGTGATTGGACAGTT	alt_6003_new	3	7	5	5	7	4	9	6	21	7
AAAGCTATTTCTGACC	alt_6003_new	8	16	5	9	9	7	12	8	19	4
ACGCGACTATTGAATA	alt_6003_new	12	31	22	16	26	16	25	9	25	13
GGTTTTACCTTAATCG	alt_6003_new	5	12	8	11	18	10	15	9	11	6
CACCCCCTTGTTCCTA	alt_6003_new	21	38	37	26	41	24	46	28	68	30
AGCTCGGCGCCCGGAG	alt_6003_new	32	31	21	15	30	20	37	19	42	14
TTAGATGTATTCTCTA	alt_6003_new	5	16	11	5	11	9	19	8	16	10
GACCACATTCAGACTC	alt_6003_new	16	41	26	27	38	14	40	14	34	24
TTTCAAAGCGCGTTAC	alt_6003_new	25	49	40	24	63	17	65	22	54	24
TGATTGCGTTCCTGAG	alt_6003_new	23	27	13	10	43	11	27	16	35	8
GACAGGTTCGTTCTTC	alt_6003_new	55	98	70	64	79	57	116	40	112	57
TTGGGCGTTCTAGAAC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TACAGAGTTGGATGAC	alt_6003_new	19	25	25	6	24	20	23	18	28	17
GGTTCATATCATTCAG	alt_6003_new	2	3	3	0	4	7	9	1	7	4
ATGCTCTTGTCTCAGA	alt_6003_new	13	21	21	12	17	11	25	8	31	8
GTACTAAATTTTACAG	alt_6003_new	2	4	7	5	2	2	2	2	7	1
CGTCGGCATTATCATT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TATTTAAACTTTCACT	alt_6003_new	1	6	3	1	5	7	10	5	6	2
TTGTTTTGTACATATA	alt_6003_new	51	82	67	63	117	52	103	50	78	80
TGTGGAGCGCTCCATG	alt_6003_new	9	14	4	12	15	12	15	6	14	15
GCCTCTCTAATGCTTC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GTTTCTCTTATCCGAA	alt_6003_new	24	36	36	30	42	18	38	27	41	19
TTAAATTCTCTCGTTC	alt_6003_new	19	38	22	19	20	10	27	20	47	24
ACACACCCTCATTGTA	alt_6003_new	12	20	13	13	39	12	19	4	30	13
TTTCCGGAACGTCAGC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CCTCTCTCTCCCTTAA	alt_6003_new	8	5	5	9	7	8	6	7	8	3
AAGTAAACAGTATCTT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CCCACATGTAATCGAT	alt_6003_new	10	10	13	4	15	6	17	5	11	6
GGTAAGCTACCACCAA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TGCGGGTGATTTTATT	alt_6003_new	7	13	18	10	17	18	16	16	25	10
TAAACCTGTGGGCTTG	alt_6003_new	0	0	0	0	0	0	0	0	0	0
ACCCATGAAGGGTGAA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TTGATGGGCCCTTGTC	alt_6003_new	2	4	4	8	5	3	9	1	4	6
ACCTCGCGAGAGGCGA	alt_6003_new	28	22	32	17	37	29	30	20	41	18
GGTGGCGTCTTAGTGG	alt_6003_new	0	0	0	0	0	0	0	0	0	0
ATGTTAATAGCGGCTA	alt_6003_new	6	10	8	13	15	5	18	4	10	8
CCGCAGGCATAGTGAT	alt_6003_new	12	34	16	13	28	10	41	14	44	11
TTCTGCGGTCATGGAA	alt_6003_new	18	14	12	15	15	4	14	20	15	14
TTCGGGTGGCCGTTAG	alt_6003_new	13	19	19	11	16	9	18	12	21	14
CTTGTCAACTTAATCG	alt_6003_new	24	26	20	17	19	18	29	15	21	14
CGTCTAGAAGAGTAGA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GATTCGAGTGGGTAAC	alt_6003_new	64	101	87	91	121	75	146	74	118	61
CGGTTGGTTTATATTC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
ACTCATATTGTTTGCC	alt_6003_new	3	7	6	4	7	4	5	8	7	3
GAATAGGCGGTAAACA	alt_6003_new	15	20	18	16	36	14	19	18	16	10
AGAGTTCTGCTTCGAT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GGCATAAGCGGGGCGT	alt_6003_new	6	5	1	5	11	5	6	7	3	3
GGGCACTATACTCGCA	alt_6003_new	21	33	47	28	35	27	39	18	39	25
GATTTTATCCTTCGGG	alt_6003_new	25	40	20	22	31	20	36	21	34	13
TATCTTTACCCATTGA	alt_6003_new	9	17	13	11	17	12	13	11	19	5
TACCAAATGTTCGCGG	alt_6003_new	41	41	45	35	72	46	69	36	84	25
GCTATCGCTCACGTGT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TGAGTTAGTGAGTTAA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TTGATGAGTGCACGTA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GTGGGACATAGCGCAC	alt_6003_new	25	40	25	14	31	20	60	34	42	25
CTTCAGTTTATCGGTT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GACGTGTTCTGTGGTA	alt_6003_new	30	42	28	26	34	15	30	25	49	19
GGTGGGTCTCGCGTTT	alt_6003_new	29	51	46	24	57	29	47	34	58	40
AAACGGTTCAAATTGA	alt_6003_new	69	93	86	56	111	66	102	53	105	67
TCTGCTTAGGTCTTTC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GCGACAGTTCTAAATG	alt_6003_new	2	6	6	2	11	5	5	2	2	4
GGCTCGCTCATGGACA	alt_6003_new	3	7	11	8	12	5	9	9	9	4
AGGCCGTTTCCTAGTT	alt_6003_new	78	128	96	78	151	110	180	76	185	98
AATTATATCACGCCCG	alt_6003_new	5	9	1	2	5	1	6	6	2	10
GTTCGTTACGATTTCA	alt_6003_new	3	0	2	0	4	0	3	1	1	1
CATCTCTCGCTGCCGC	alt_6003_new	10	10	4	15	7	11	6	16	5	7
TTTAAGGATTTTATAA	alt_6003_new	1	5	0	5	2	1	6	2	7	2
ACGCCACTCTCCGTCC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
GTTTTCGCCGATAGTA	alt_6003_new	0	6	1	3	7	2	10	2	4	1
GGTGTCAGTAACATTG	alt_6003_new	9	21	5	7	21	6	23	17	33	8
TTTCACCTTTTTTAGT	alt_6003_new	1	2	0	1	2	3	3	1	2	1
ATCATATTTTCACAGG	alt_6003_new	1	4	6	4	2	8	0	4	3	4
GCAATTGCATTAAACC	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CGTGACTCCGTTGCCC	alt_6003_new	7	22	5	10	13	6	14	5	18	7
ATGTGCTCCGTCGATT	alt_6003_new	7	19	9	6	21	20	18	8	27	11
TTCCCCCCCTGACGTG	alt_6003_new	9	16	14	6	23	9	16	14	27	8
TTGTATCATGCCTTTG	alt_6003_new	18	15	15	12	17	10	12	9	13	13
TGCGTACGTGCTTGCG	alt_6003_new	12	39	36	22	37	26	47	21	36	20
CACAGAAGAGACTTGG	alt_6003_new	29	88	54	43	92	38	94	44	92	32
TTGTTCTCACAATAAT	alt_6003_new	25	41	39	20	34	23	39	15	21	19
TGTCTAGTACTTAGGC	alt_6003_new	28	43	36	22	38	12	45	12	56	32
AGTGCTAGTTACCTCA	alt_6003_new	17	29	19	17	29	18	25	12	31	10
GCAGACCACCTCTTGA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
CGTATACAACAAGCTA	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TCACTACCATTCCGGT	alt_6003_new	19	35	12	27	37	21	42	12	26	14
GTATTGTGGCGCTGGA	alt_6003_new	32	34	33	25	25	29	55	22	51	32
CTGTATCATAGGCTTA	alt_6003_new	47	74	55	36	69	60	70	36	62	39
GGCCACTCTTAGGGAG	alt_6003_new	8	23	10	9	22	11	26	6	14	9
CCATATATTGTCTTCA	alt_6003_new	10	6	6	9	9	1	8	6	8	2
TCGTTCGTTTCCCCGC	alt_6003_new	12	37	15	10	24	16	29	16	29	10
GGGCCTAGAGTGACCG	alt_6003_new	18	32	25	25	29	34	48	23	40	22
AACCCGACTCTAGTAC	alt_6003_new	23	34	11	20	41	11	33	15	37	5
CAGCAGTATGTGTATT	alt_6003_new	0	0	0	0	0	0	0	0	0	0
TATTACGAATTGTTTG	alt_6003_new	25	28	20	16	32	18	38	24	39	17
GCTCGAAACAATTCAG	alt_6003_new	0	0	0	0	0	0	0	0	0	0
ATCAGGACACTTCTCA	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TTGTTGACCTAGTCCT	alt_5209_upstream	74	102	79	80	107	77	102	69	101	68
GTCAGTCAATTTCATC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
ACTTGCAGAATTCATG	alt_5209_upstream	3	8	9	5	6	1	3	4	7	4
TACCCATCTCGGCGTT	alt_5209_upstream	50	57	58	50	58	48	62	57	74	49
CGCTGTGTTGAAATGC	alt_5209_upstream	82	120	110	97	105	93	107	104	149	87
GTGGGAAAAGGTTATT	alt_5209_upstream	113	131	145	115	116	123	154	97	139	114
ATTACAGGCTGAGCTA	alt_5209_upstream	93	124	101	83	113	95	118	77	97	87
GTTTAGAATCGGTTTC	alt_5209_upstream	12	14	17	9	10	4	6	12	16	12
TTAGGTTTTTTTAGTC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
GCTCATTTCTAGGCTG	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TGCCGGCTGTAGGGTA	alt_5209_upstream	4	8	6	6	8	5	6	14	6	2
TTCTACCCGCGGGTCC	alt_5209_upstream	79	122	121	77	119	88	88	83	128	71
AAAGCGCGCTTCCAGC	alt_5209_upstream	15	19	10	16	23	9	29	16	19	14
CTATACGCAGACTTGC	alt_5209_upstream	18	23	19	12	27	18	14	22	17	11
AAATAGTTTAGAGGTA	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
GTGTCTGCATCGCTAT	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
CTTAGAGATATCCTTC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TGCCTGCATTTAAGAT	alt_5209_upstream	15	27	24	20	36	21	28	18	29	26
CCTCGAACTCCGTTGC	alt_5209_upstream	3	15	0	0	12	2	16	3	8	2
GGCTATTATCCGTTTT	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
AGATCTCAGTTCACAT	alt_5209_upstream	9	12	7	2	14	9	9	10	6	5
TTTGATGAGTCTATCA	alt_5209_upstream	7	0	2	0	6	2	7	3	3	2
AACATCGCTCATGGGG	alt_5209_upstream	4	5	11	14	12	8	10	6	9	3
ATATCAACACGTTCGC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TACGGCTCGTAGATCT	alt_5209_upstream	10	10	10	5	14	13	12	12	16	5
CAGTTGTTTTACTGTG	alt_5209_upstream	9	12	8	4	4	3	11	5	7	3
TCTGAAAGCTTTTAGG	alt_5209_upstream	19	15	15	23	22	20	16	17	33	18
GGCCGTGACGTGGGTA	alt_5209_upstream	11	18	5	13	15	8	6	7	15	4
CACTTATCGAGTTGCA	alt_5209_upstream	36	37	42	27	39	36	38	39	29	30
CGCGTGTTACTTACCA	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
AGTAAGTCTCTCGAAT	alt_5209_upstream	55	62	66	74	79	52	69	64	73	76
TGAGGTCTTTGTTCCA	alt_5209_upstream	6	10	4	7	7	9	14	7	10	8
CCGATAATCGTTTGGG	alt_5209_upstream	13	28	7	12	52	7	53	12	50	11
CTGACTAGAAATGCGT	alt_5209_upstream	92	113	105	102	119	91	136	59	119	76
GAATTATAAACCATAT	alt_5209_upstream	54	39	57	47	52	52	58	51	48	33
AGCTGTCAGTCTTTAG	alt_5209_upstream	3	6	7	2	6	7	7	3	12	2
TGCTGGGTATGCTGGC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TGCCAAGTATTTAACA	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
AATATTTTGATGGCAA	alt_5209_upstream	8	5	10	10	9	7	12	8	10	2
GTCGTAGCCTCCTCAT	alt_5209_upstream	18	23	18	17	23	9	24	9	13	11
CTCCGGGCGTCTATCT	alt_5209_upstream	14	19	26	19	33	17	20	12	31	12
CGCCTCTATATCTATG	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTTCACTCTGGGT	alt_5209_upstream	133	180	134	123	166	141	176	116	170	121
TTTTCCATCCCTTGTT	alt_5209_upstream	99	109	115	105	109	78	103	83	111	77
TGCCTCGGATCACTCC	alt_5209_upstream	48	43	36	33	32	34	48	20	37	32
GGATGGGATCATAATT	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
AATAAACCTTCGCCTA	alt_5209_upstream	77	99	101	88	102	79	106	85	115	75
TAGGCCCGGGAACTAC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
ACTCAATTCTGTAATT	alt_5209_upstream	14	13	20	19	12	11	26	14	19	17
TTAACTACAAACGGTT	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCGGAGGATCATC	alt_5209_upstream	66	58	84	54	79	52	61	48	61	44
GGTTCGTTTCTGGTTA	alt_5209_upstream	10	10	5	4	15	17	8	16	11	7
GGCAAGGCTTTAAGCC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TGAGAACTTTACCGCT	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
ATTGATGGTTGTTGCT	alt_5209_upstream	30	38	42	32	36	39	39	34	51	27
CGTGAGCCAGTACGGC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TCCCAAGCTCTCTATA	alt_5209_upstream	45	45	43	33	35	29	58	30	48	39
TTGCACTCGTTTTATT	alt_5209_upstream	43	54	65	50	59	45	71	31	63	46
CTGTAGACGGGAGCCC	alt_5209_upstream	1	2	0	1	2	1	2	1	3	5
TCAACTGGCCCGATGT	alt_5209_upstream	132	172	171	157	165	134	211	109	211	114
CTGTTTACGAATTACA	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
GGCTTATGGGTCTCCT	alt_5209_upstream	64	108	90	79	93	112	134	73	117	93
AGGCCTGGGTTTAGTA	alt_5209_upstream	8	14	13	4	8	11	7	6	10	8
TGGACTACCATTATGT	alt_5209_upstream	34	16	33	42	24	25	37	31	34	40
GTGGTCGCAGGGTGTC	alt_5209_upstream	1	3	2	1	2	0	0	1	1	2
TTTTGTGCCGTTTACC	alt_5209_upstream	24	26	30	17	19	32	31	15	24	27
GATCACCCTAGTTTCC	alt_5209_upstream	19	22	26	31	32	16	33	27	35	31
CATGAGACCGCTCGGA	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
TGGCAGTCTTACTGCC	alt_5209_upstream	20	32	29	26	37	22	33	29	29	23
GCTACGTCACATCTAG	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
ATCTACGGCTACTTCT	alt_5209_upstream	253	264	287	292	347	254	370	257	352	214
TAGTGCGTTCCGTCTC	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
AAAGGGATTTCTTATT	alt_5209_upstream	31	41	33	24	44	34	43	29	45	30
TGCTCCACGGGCTACT	alt_5209_upstream	72	93	114	83	130	97	141	94	120	84
TAGTTTTCTCCATGAC	alt_5209_upstream	12	27	12	19	28	12	39	13	36	13
GCCCTCCGTGCGAAGA	alt_5209_upstream	4	5	8	7	4	1	6	6	13	5
CGGCCCACGGATTAGT	alt_5209_upstream	44	52	42	52	66	49	45	45	44	46
TGTTCGTCAGACAAGA	alt_5209_upstream	73	79	87	46	97	69	108	54	121	62
TATCGGTTTTCCCCCT	alt_5209_upstream	0	0	0	0	0	0	0	0	0	0
CGTCTATCAATGGTTA	ref_5627_new	5	3	11	6	10	5	8	10	4	4
TGTACCGCCAGTAGTG	ref_5627_new	39	31	55	37	40	29	27	32	33	30
AACAGGACTCACTTTG	ref_5627_new	0	0	0	0	0	0	0	0	0	0
AGATAGATTGCTACCT	ref_5627_new	32	29	41	31	27	36	33	45	34	39
CTCTGACGTGCCTTTC	ref_5627_new	0	0	0	0	0	0	0	0	0	0
GTAACGATGCACATGC	ref_5627_new	53	39	70	57	52	67	51	58	34	57
TCGGTTTGATCTTGGA	ref_5627_new	124	74	185	119	82	140	82	121	118	121
TATAGTGCCGTTTTTG	ref_5627_new	7	1	9	4	3	3	5	5	5	6
ACAGGGTTTCGATAGC	ref_5627_new	19	9	21	20	14	21	11	16	12	18
GTAGATACTGTTCTGC	ref_5627_new	68	48	98	73	55	85	58	58	69	71
TCCGCTAGGTGCTATT	ref_5627_new	3	6	15	7	4	2	5	10	3	6
TCAATGCGACTATGCG	ref_5627_new	4	12	4	4	9	5	4	8	6	3
ATTTCCCCCGTTCTTC	ref_5627_new	49	35	52	45	34	44	28	45	30	44
ATTCCTTGTGCTCTTA	ref_5627_new	35	27	35	47	22	29	28	33	30	28
GTACGAGGGTTGCTTC	ref_5627_new	47	41	45	47	33	34	31	30	51	43
TAGACCCAGTCCTGTT	ref_5627_new	211	149	273	218	132	224	159	220	152	182
TAGCCCCAGTCCTGTT	ref_5627_new	0	0	0	0	0	0	0	0	0	0
TTAATAAGGAGCATGA	ref_5627_new	0	0	0	0	0	0	0	0	0	0
CATTGAGTCTAGCGAG	ref_5627_new	8	7	21	8	16	10	11	7	13	5
AAAATCTATGCATAAC	ref_5627_new	0	0	0	0	0	0	0	0	0	0
TTTTATGTTTACTCGG	ref_5627_new	17	3	11	12	7	19	12	11	11	8
CCGGCCATGTTATTTG	ref_5627_new	0	8	2	1	7	0	8	6	12	1
TGTTGCAGCGGGCTAC	ref_5627_new	153	138	184	148	163	139	153	134	153	150
TCCTTTCCCTATTAAG	ref_5627_new	76	47	84	67	59	49	40	80	58	70
GTAAGCATCATTGGTC	ref_5627_new	12	6	18	9	16	16	7	8	9	15
ATGATAAGTACTTTTG	ref_5627_new	0	0	0	0	0	0	0	0	0	0
TGGTTTTCCCAGCTCT	ref_5627_new	39	25	60	38	26	29	24	45	28	44
AATTGAGATCAACCCA	ref_5627_new	47	22	52	31	22	36	28	33	29	37
GTTTCCCTTTGCGGGG	ref_5627_new	0	0	0	0	0	0	0	0	0	0
GAACTCATCTTTTGCT	ref_5627_new	91	75	114	108	67	77	66	108	82	81
TAACGGGCAGCTGCGC	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
TTGTAGTTTCTGCCCT	ref_3966_RC	135	135	138	127	121	116	142	111	117	92
CACTCTATTCGTGGAA	ref_3966_RC	40	42	38	49	36	36	39	40	40	31
TATTTTGGGAGCGCGG	ref_3966_RC	158	138	161	148	144	161	146	139	162	155
ATTTTTCGCACAGCAC	ref_3966_RC	15	16	26	20	21	24	24	13	13	19
GGCTGTAATCGCGACT	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
TGTATAGTAGCCAGTG	ref_3966_RC	56	67	81	48	50	41	44	49	67	46
CTCCCCTGACAAATCC	ref_3966_RC	12	62	5	14	90	6	57	4	72	8
AGTTGGTTTAAAATGC	ref_3966_RC	26	29	40	29	44	28	33	21	31	24
TCATCCTGTCTACTCG	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
GACCAGAATGAAGATC	ref_3966_RC	17	26	23	11	20	16	30	11	14	16
CCGTTCGCAAACCAAA	ref_3966_RC	7	15	11	4	21	11	19	7	10	12
CTCCCGTAGCAAGTCA	ref_3966_RC	21	38	38	25	37	21	41	25	33	16
GTTCTACGGTGTGCCG	ref_3966_RC	45	55	59	69	56	43	83	28	97	44
TTACTCATTACCTTGG	ref_3966_RC	97	113	112	82	142	83	137	82	134	94
CTATAATGCATTAGAT	ref_3966_RC	24	12	27	34	24	26	16	18	26	24
AAAATTATACTATTAT	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
CCTAATATCATTACGC	ref_3966_RC	66	83	74	86	76	47	78	84	78	53
AGGGTGATATAAGCCG	ref_3966_RC	0	0	1	0	0	0	0	0	0	0
TGAGCCACTGTCCTGT	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
AAGTAGGGCGCTCGTT	ref_3966_RC	8	9	7	3	4	6	5	8	5	9
TCCCAGTTGTTAAGCA	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
ACATCATCGGACAGGA	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
CGGTTGGTTATTCCCT	ref_3966_RC	11	23	17	18	18	24	18	9	20	17
CTCTTGGCGCAGTTTA	ref_3966_RC	2	0	0	2	3	1	0	1	1	4
TAACCGACCCATTAGT	ref_3966_RC	11	14	18	9	12	11	14	7	18	11
AGGGTGATATGAGCCG	ref_3966_RC	20	19	25	23	21	19	34	16	18	12
CCCGCACATTAGCTAG	ref_3966_RC	4	0	4	5	9	5	6	8	8	3
TCGGCTTGCACAGTCG	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
CCATAACGGCTGTGCC	ref_3966_RC	40	43	60	61	50	53	42	51	40	35
GTATCCCCATAGGGTC	ref_3966_RC	24	17	22	16	18	20	30	14	31	12
TCTCATTTCCATTGAT	ref_3966_RC	0	0	0	0	0	0	0	0	0	0
CCGCTCCCACGCGCCA	ref_3187_reverse	19	17	13	15	16	12	22	15	18	15
GTGTTTTACAAGTGAC	ref_3187_reverse	45	72	53	37	74	44	81	34	72	48
AGCGTATTGTAATGGG	ref_3187_reverse	67	95	74	68	88	55	97	49	84	60
ATTTATTCTGAAGGTC	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
AGCTGAGTTGTACGAG	ref_3187_reverse	43	20	43	43	21	44	23	35	32	40
AACCTGCCCGGGTCTC	ref_3187_reverse	0	0	1	0	0	0	1	0	0	0
TGCGCGCTGCCCTTGC	ref_3187_reverse	7	8	11	11	15	5	12	11	9	7
AGTGATGTTTGAAATT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
CCGCTGTGAGCTAAAA	ref_3187_reverse	4	29	5	2	13	6	18	3	24	6
CTTCATTGTAAACTAT	ref_3187_reverse	30	36	54	19	38	28	52	24	39	27
CTCGTTTGTGTCTTAA	ref_3187_reverse	3	11	10	6	4	1	11	3	6	3
GTTAGCCTCCTTTATA	ref_3187_reverse	64	120	76	64	97	45	123	63	129	63
ATTGGTTCCTGTAAAG	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
TCTGTTATTCGGCTTA	ref_3187_reverse	38	67	56	38	93	36	86	32	90	30
AAGTCATCCACATAAG	ref_3187_reverse	36	53	43	38	69	34	88	22	50	23
GTCAATATATCTCGTG	ref_3187_reverse	7	21	10	12	19	2	18	8	18	6
TCGAATATATTGCCTG	ref_3187_reverse	77	97	78	90	162	96	112	69	152	57
TCAGGATCTCTCCCTG	ref_3187_reverse	62	85	46	51	101	51	86	42	106	31
AGATCTTTTTTTGAAG	ref_3187_reverse	15	25	15	11	21	13	29	13	36	16
GGTTCTGTTCTCCTGA	ref_3187_reverse	8	19	11	6	12	10	14	8	13	9
GTTATGCACAATCCTG	ref_3187_reverse	9	19	20	19	21	14	27	11	28	14
CAAGTTTGAATAGTAT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
CGACGTAAGCCTGTGT	ref_3187_reverse	6	16	13	6	28	6	22	14	26	9
ATATTTCCACTTATGG	ref_3187_reverse	16	16	20	18	25	21	11	19	31	19
TTCAAAGTGTGCCCTA	ref_3187_reverse	0	3	1	1	2	1	4	1	1	0
CTGTTTCCAGGCAACT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
ACGTTGAACTTTCTAA	ref_3187_reverse	44	47	50	47	58	31	53	36	44	34
ACCAATAACTGCCACG	ref_3187_reverse	21	24	24	17	22	10	29	15	24	15
TGTTGACTCGCTGACT	ref_3187_reverse	13	28	20	19	16	13	18	21	17	8
CAGTAGCTCCACATCG	ref_3187_reverse	10	18	13	9	21	13	25	5	22	6
CTTTACGGGGCATTTT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GAACTCCCTCTAGTTA	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GGATCCCGTATACGTC	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GTCCAGTTTTAATACT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
CGAATGATATCAAGCC	ref_3187_reverse	31	21	24	21	34	31	42	26	32	21
GCTGAGGTACGTTTAC	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
CTGCGCGTCTATATGT	ref_3187_reverse	30	81	42	38	76	35	101	35	69	27
TATCCTATCGTCTCTC	ref_3187_reverse	51	36	51	48	51	46	55	39	33	44
TGAGTCGGGCTTGGCA	ref_3187_reverse	27	20	19	12	33	18	23	22	45	20
GGAATTCGTGCATGTT	ref_3187_reverse	95	179	153	117	220	129	226	98	230	108
CTTATTTGCTTTGTAT	ref_3187_reverse	4	4	3	5	2	8	10	0	5	2
GTGCTGGTAGAAGTAA	ref_3187_reverse	16	8	13	12	9	9	10	9	17	8
CTCTTTGGGATGCGGC	ref_3187_reverse	14	15	17	12	17	13	26	16	26	10
ACCCATACTCAGGCCG	ref_3187_reverse	11	16	11	13	14	10	17	9	22	6
TGCATTTTCTGCGTCC	ref_3187_reverse	19	20	18	13	14	17	15	15	22	19
CCTAATGCGGAGTACT	ref_3187_reverse	33	70	37	40	102	35	94	31	104	25
CACGATCTAAGGCCCC	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GATCGCTTTCGGGTAT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GAATCAAATTAATGAC	ref_3187_reverse	69	88	96	73	91	58	113	61	80	68
GTAGCGAAATTGTTGC	ref_3187_reverse	7	1	1	1	2	5	3	0	4	1
ACATAGGTATTGTGCC	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
TGTAGGTCGAAAGGGG	ref_3187_reverse	5	4	8	6	8	9	12	4	11	7
TGACGATTGTATACTA	ref_3187_reverse	40	39	49	33	42	26	48	27	59	35
CCGATTCTACACGCAC	ref_3187_reverse	19	48	30	26	42	23	52	18	56	34
CTCACAGTTAGCCTAA	ref_3187_reverse	7	19	11	12	32	13	27	18	36	14
GTTGGGAATAGTACAG	ref_3187_reverse	21	25	14	12	25	11	28	10	28	12
GGATAGTACCATTATT	ref_3187_reverse	12	16	17	14	15	7	29	11	20	8
TGACTCAGTGGGGCCG	ref_3187_reverse	21	34	29	25	30	16	40	21	36	10
GGACTGACGGAATGGC	ref_3187_reverse	9	15	9	13	16	6	21	21	10	12
CTTCGGACTTCGATGG	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GTTATGGTTTTGTGGT	ref_3187_reverse	74	157	90	76	150	102	174	75	198	69
ATTCACGATGCTGACG	ref_3187_reverse	155	181	185	139	164	141	183	127	194	116
CACCAAGACTAGGGGA	ref_3187_reverse	46	75	58	48	70	51	55	35	78	43
TGTTCGTGGGCTACTT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
AAAAACGCCACCGAAT	ref_3187_reverse	9	35	16	13	31	21	18	14	24	14
CGGTTTTGGAAGGCAG	ref_3187_reverse	3	11	4	2	2	6	7	3	4	3
CCCCGCCCGGCCAAGA	ref_3187_reverse	22	77	45	30	72	19	70	28	64	22
CCGTGTGCTCTTTTGA	ref_3187_reverse	16	46	25	21	51	15	40	24	34	17
CCTGAGGACGGTTTTA	ref_3187_reverse	35	41	36	27	44	43	45	36	40	26
AGCCTGAACAGGGACA	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
CTAGCGAGCGCATTAC	ref_3187_reverse	24	45	22	20	40	29	58	31	43	22
AACTACCCTGATGGCC	ref_3187_reverse	23	33	22	20	34	20	44	24	41	29
TTTCCTTTGGTGGAAG	ref_3187_reverse	6	12	10	7	18	4	10	12	11	4
AAATTTACTTCTCGGA	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
CTCTTTCTCGTCTCCG	ref_3187_reverse	29	33	26	25	34	29	38	36	31	34
TATCGCCAGCCCCTAT	ref_3187_reverse	38	73	60	29	52	53	53	38	65	36
TCGGCGTATACCCAGT	ref_3187_reverse	37	50	53	29	59	38	50	28	52	30
TCCTAACTTTATCGCC	ref_3187_reverse	30	35	40	28	42	24	63	25	43	35
GCCACCTGGATTAAGC	ref_3187_reverse	27	83	31	27	71	23	88	27	94	25
GACGCTTACCTCGAAG	ref_3187_reverse	2	23	3	6	36	4	27	2	27	3
GACAGAGCGATCCTGA	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
TGCATTGGAGGGGATG	ref_3187_reverse	51	90	62	69	102	55	121	44	105	56
GACTTTCCCAGTCTCG	ref_3187_reverse	36	68	43	39	67	58	61	50	68	45
TGATTTTGATCCTAAG	ref_3187_reverse	121	183	137	130	199	114	183	105	155	100
GGGAATTCTCACTATC	ref_3187_reverse	5	15	4	4	16	13	3	7	22	2
TTGTCTCAGAATACGC	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GCTTTGCGTCGAAAGG	ref_3187_reverse	135	246	170	160	269	129	288	156	269	113
ATTGCTAGCGTCAGTT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
TACGAAGGTTGTCTGT	ref_3187_reverse	14	17	17	12	21	15	11	10	18	8
CACAAGTCGTTAAGAT	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
AACCATAGCCTATGAC	ref_3187_reverse	0	0	0	0	0	0	0	0	0	0
GTTGCTGCCAAAATGG	ref_3187_reverse	6	4	6	7	3	9	6	7	2	5
AATTTTACAGGTAGTC	ref_3569_RC	32	27	37	23	31	26	27	16	32	27
ATGAATAAGGGGAATT	ref_3569_RC	10	22	24	15	25	16	28	20	29	22
GGACGTTTGATTCGTT	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
GCGGCTTATGAGTCTT	ref_3569_RC	23	27	33	38	37	29	41	26	41	26
GTCGAGGCGATTGGAC	ref_3569_RC	69	86	79	53	76	47	83	71	82	49
ACATCGTTTTTTGACG	ref_3569_RC	13	28	17	11	32	15	18	11	30	11
TACTGATACGCTTCAT	ref_3569_RC	22	17	12	15	17	9	17	15	11	11
TCTGTGCGGGGGCTGG	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
TGCGCCAGCGCAGTCC	ref_3569_RC	2	0	4	0	0	1	1	0	1	0
TAGCCGTGGCAGTGAG	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
TATTATTTGTGGAATC	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
CATGAAGTTTTTTTAA	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
TCACAGGTCATCCTAA	ref_3569_RC	55	68	63	51	64	53	61	61	74	38
AAATTTACTGAAATTT	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
TATGTGTATCAGGTAG	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
GTACAGTGCTTACTTC	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
GATTTATCTATTATTT	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
TGAAGTGAGTCTGTTT	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
CCGCATATTCGGATCT	ref_3569_RC	2	3	4	2	4	3	2	4	2	1
CTCGAATTATTTGTCC	ref_3569_RC	64	79	125	89	69	61	82	72	81	84
TGATAGTGCGATTCAT	ref_3569_RC	4	10	12	5	11	2	7	6	6	7
CGTCTAGCGTAAATGA	ref_3569_RC	19	25	15	21	23	13	31	21	25	13
GCAGGACACGCCGGAA	ref_3569_RC	21	23	24	17	16	23	28	22	23	15
TACAGGGACAAATAAT	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
ATTAAGGCTTCTTTCT	ref_3569_RC	17	9	23	13	15	16	21	9	13	13
TCCCGTAAAATGACAG	ref_3569_RC	0	0	0	0	0	0	0	0	0	0
TAAATGCTCTGATCGT	ref_3569_RC	9	29	24	20	23	19	27	18	29	24
GTTGATTGAAAGACAG	ref_3569_RC	61	93	67	65	78	63	80	56	105	70
TCGAGGCGTGGTGCAG	ref_3319_missing	20	33	19	25	23	17	38	21	41	28
CGGTTCGTCGTTTGGA	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
TGGGTTACCTCCTCTT	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
CGTGCCGATCATGGGG	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
GCGCGTGCTATCATGG	ref_3319_missing	14	21	21	17	30	20	37	24	29	13
CGGCCACGCAGACCCA	ref_3319_missing	20	19	21	14	16	10	25	17	18	20
AAGTGAAAACACACTG	ref_3319_missing	2	5	4	0	11	3	12	6	3	0
TCGAAGGTAACTTTAG	ref_3319_missing	0	2	0	0	0	0	3	1	5	1
CTCCTGGGGCGCATAC	alt_3319_missing	46	118	56	46	122	46	122	38	124	51
TTTGATATCTCTTATC	ref_3319_missing	13	25	20	6	19	15	14	18	28	16
GGGGCACCGTTCACTG	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
GTCTTGTTCGGCTTCT	ref_3319_missing	12	12	20	9	11	8	8	9	7	12
CACGGCGCGTCCCGTG	ref_3319_missing	23	39	34	22	39	17	41	26	51	28
TAAAGTAGCCTTCTCT	ref_3319_missing	41	64	52	42	62	39	46	37	44	43
ACACCGCATTAGGCTA	ref_3319_missing	14	24	14	13	10	9	27	9	25	13
AATTCACTCTTACCCT	ref_3319_missing	24	48	25	12	68	24	70	26	51	20
ATGTACCCTTAGGCCC	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
AGTATGGGACTTCAAT	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
TAATCCTGGCACTGTT	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
CGTCCAATAATGGCCG	ref_3319_missing	61	81	75	71	86	49	96	48	85	47
TAACTGATAGAATATT	ref_3319_missing	21	28	22	15	18	21	22	8	18	7
GGGAATTTAGTTGGGT	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
TTGACCGTAAGCAACG	ref_3319_missing	6	16	13	14	16	6	15	9	9	5
AGGGGCTCCTCCGCCA	ref_3319_missing	10	10	13	5	8	7	7	8	16	12
TCTCGTAGAGGCTAGC	ref_3319_missing	44	52	55	34	46	39	73	39	61	42
GTAGTCGCGGTCCGTA	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
CGATGGGTTCTTAGGC	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
TCAACGAACGTCTAAT	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
AGGTACCACTTTCTTA	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
AACACCCCATAGGTTT	alt_3319_missing	14	25	19	13	39	17	22	17	31	12
GTTTGCTGCCCTAATG	ref_3319_missing	3	3	4	2	7	3	8	1	9	8
TCACGATGACCTGTTA	alt_3319_missing	50	200	78	59	185	56	223	61	197	53
GTCCTGTGTTTGCGCA	ref_3319_missing	26	35	20	12	31	25	49	24	26	15
TTCACAGGAGCGCTTA	ref_3319_missing	5	6	5	5	15	1	17	8	7	1
AGTTATTATAGCTAAT	ref_3319_missing	24	73	49	42	94	42	79	38	73	31
GGCTACGCAACTTTTT	ref_3319_missing	6	9	8	3	8	7	10	6	12	3
CGCATAATGCTGCACA	ref_3319_missing	3	4	2	4	2	1	2	0	5	2
CAAGTTACGATTTAAG	ref_3319_missing	42	81	69	63	78	62	87	58	85	55
CTGGCCCGGTTGGTCG	ref_3319_missing	7	14	7	9	10	13	16	10	15	9
GTGCTGCTCGGATGTC	ref_3319_missing	13	12	12	8	9	7	14	9	15	13
AAAAATGGCTCCTCCT	ref_3319_missing	41	46	45	41	59	42	37	57	48	40
ATTGAATTCCCGTGGA	ref_3319_missing	0	0	0	0	0	0	0	0	0	0
GGGAATCTTTTCGGGT	ref_3319_missing	26	34	36	39	57	36	62	32	69	37
TGGAGTCCTAAGGACT	ref_3319_missing	17	46	22	28	30	14	34	22	38	15
ATAACCTTCTCTGCGT	ref_1612_RC	115	182	125	100	174	95	194	78	162	90
GGCATGTAGAGGATAC	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
CATCAAAGCGTGAGGC	ref_1612_RC	23	34	36	32	43	27	72	25	49	16
AGGTTTTTTATTTTGA	ref_1612_RC	15	26	4	9	16	9	16	5	27	5
ATATTAGGAGGGTCTG	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
CTACCTGCGTTTCGCT	ref_1612_RC	1	24	1	0	17	1	16	3	17	2
AGTACGCTCTGTTGGC	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
CTTGTACGCGGTGCGA	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
AATGATGGCACTTGGC	ref_1612_RC	0	4	1	2	5	2	4	5	5	2
CCATTCGTTTTAGCTT	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
ATGCCTAAAGAGATCG	ref_1612_RC	2	5	3	0	4	5	10	2	10	6
GTAGATAAACGTTGGT	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
ACCGGTGGCTCACGAG	ref_1612_RC	7	23	7	19	32	7	25	10	36	15
TTGCGCGGCGAAAGAT	ref_1612_RC	59	110	74	42	75	52	94	43	112	39
CATCAGGTTCAACTTT	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
TAGCCCGCTGGTGTAG	ref_1612_RC	16	30	14	8	26	9	38	6	28	7
AGGCACTTGCGGTACG	ref_1612_RC	43	79	41	44	67	25	62	26	88	32
GTTTTTCGGTTTACCG	ref_1612_RC	22	43	30	22	47	21	40	27	46	18
TCCTACTGTTTCTAAT	ref_1612_RC	10	29	21	7	21	10	23	14	8	11
CTGTTGCGGTATTGGC	ref_1612_RC	52	112	69	41	82	54	104	55	115	39
TGTACGCTCTGTTGGC	ref_1612_RC	98	225	101	97	211	77	253	93	241	92
TTCCTTTGTCACTTCG	ref_1612_RC	6	8	2	1	11	2	14	3	6	5
TCCGTAGTTCTGACCT	ref_1612_RC	28	54	46	32	51	28	51	19	51	21
GCAGTTACTGGTGTTA	ref_1612_RC	14	28	24	4	29	9	27	17	41	8
CAGAGGTAATCGTTTC	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
ATACCTAATTAGCCCG	ref_1612_RC	3	11	12	6	12	8	21	8	20	10
ATGTGCGCAGAATGGC	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
GGATTCTTCACATACA	ref_1612_RC	4	13	6	3	12	10	12	5	7	6
AATGATGGGTAATGGT	ref_1612_RC	25	28	23	13	34	7	39	19	40	8
ATCTCTGCCATAAGTG	ref_1612_RC	56	101	44	34	101	37	90	41	98	32
ACGGTCAAACAATCCA	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
GGTAGCTTTTTTCTCT	ref_1612_RC	15	32	12	13	35	20	23	9	23	13
CTAGCTTGTTTTGCTA	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
CACCTAGATCATCTCC	ref_1612_RC	0	6	3	1	10	4	4	1	4	3
CGCAGAGATCAAATCC	ref_1612_RC	27	63	39	37	62	20	72	34	66	31
ATAACCTTCTCAGCGT	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
TTGATCAATCAAGGCC	ref_1612_RC	54	62	58	35	67	43	87	39	68	31
TATTTTGGATGGTGAG	ref_1612_RC	6	5	8	4	16	7	10	4	12	5
ACTTTTCTAGGGATAA	ref_1612_RC	13	26	19	15	27	16	37	17	40	17
AATGAGGGCTATCTAT	ref_1612_RC	0	10	10	4	8	3	6	3	5	3
TGTACCACATCGGACT	ref_1612_RC	31	73	44	31	81	34	74	25	86	32
ATCGCTATCTGCCTGC	ref_1612_RC	26	55	29	36	65	33	54	28	88	39
ATATAGCAGAATTTTT	ref_1612_RC	31	74	29	38	62	33	71	32	58	29
GTCCCTAGCCTCGCTC	ref_1612_RC	2	12	3	1	10	2	9	2	13	5
GCCCCCCCAGTCAGTC	ref_1612_RC	18	26	15	15	21	11	40	10	39	13
TGCGCTTCCGTTCAGT	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
TGTCGCAATTTTAAAG	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
TTGCCACTGCGGAAAC	ref_1612_RC	13	31	18	15	37	21	40	18	41	15
CAGTGTTGGAGTATTG	ref_1612_RC	35	76	27	32	76	42	75	42	86	31
ACAGATTGCAGGGCTT	ref_1612_RC	10	17	8	7	13	8	17	6	15	9
AACACTGAGGTCCCGG	ref_1612_RC	16	36	21	26	46	34	39	12	39	21
CAACATAACATGCGAA	ref_1612_RC	20	18	17	13	31	21	32	13	14	9
CCTTGTGTGCTCCCCC	ref_1612_RC	0	0	0	0	0	0	0	0	0	0
GCCTTTCTCTTCGGTC	ref_1612_RC	52	99	79	62	102	73	104	61	123	45
TAACACCGTAGTAGCA	ref_1612_RC	3	14	12	5	6	6	20	4	20	4
TCGTGGGTTCGTGTTA	ref_1612_RC	18	13	13	4	14	4	18	9	20	8
TGAGTCGATGGAGGAA	ref_1612_RC	15	20	12	12	19	9	30	7	14	7
TTGTTATAGGGTGGGA	ref_1612_RC	135	271	171	145	298	151	275	150	288	120
TATCGTAATCTCGTTT	ref_1612_RC	17	16	13	12	17	13	21	21	24	11
TGGGACAAATTAAGTG	ref_1612_RC	3	3	3	10	10	3	6	5	11	7
TTTCGCTATGGGTCCA	ref_5868_new	7	16	6	9	12	8	16	9	17	8
TGTAACTTGATGCATT	ref_5868_new	32	62	43	44	58	31	70	23	83	32
TTTCTGGATGTTGTTC	ref_5868_new	5	9	5	0	6	2	7	1	8	9
TTCGCTCCCAGGACCC	ref_5868_new	31	55	19	24	50	30	63	24	50	16
ATCCACCATAGTTAAT	ref_5868_new	5	11	2	5	6	4	7	0	6	3
CTACCCGATCGGTGAA	ref_5868_new	22	79	55	36	88	23	87	28	90	24
AAGAGTTTTCGTTTGT	ref_5868_new	0	0	0	0	0	0	0	0	0	0
ACATACTGGCGCACTA	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TAAAGGCACGTAAGAT	ref_5868_new	31	59	36	37	37	40	54	29	56	34
CCATTGAAGATTCCAA	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TATGCTAGAAATAGTG	ref_5868_new	2	2	0	1	7	3	4	6	9	4
AACTGGGTTAACAGCC	ref_5868_new	0	0	0	0	0	0	0	0	0	0
GTCAACGCAAGGTTTG	ref_5868_new	8	15	6	6	15	6	15	9	16	2
AGGGCATTTCGGTTAT	ref_5868_new	0	0	0	0	0	0	0	0	0	0
CAACTCCCTGTGCCCA	ref_5868_new	3	28	5	1	31	4	41	3	20	1
GGCGCCTCGTTTGAAA	ref_5868_new	9	26	10	11	9	12	18	5	27	13
GTTTTAATTGTCATCC	ref_5868_new	20	34	19	19	35	16	27	15	41	13
GCGCTACTTTGTTTCG	ref_5868_new	0	0	0	0	0	0	0	0	0	0
CGTTTTTGCCCGGGAA	ref_5868_new	11	13	9	8	10	9	12	12	11	21
TAGCCTGGTGGGCCTT	ref_5868_new	11	15	14	12	13	12	16	11	21	6
ATCCTACCCTAATTTA	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TCAAGCGGCTGGCGCC	ref_5868_new	11	10	9	16	11	7	15	5	14	10
GGTAAATATTGGGCAG	ref_5868_new	7	28	14	13	25	11	31	13	27	15
GGCCATTGCTCACTTT	ref_5868_new	0	0	0	0	0	0	0	0	0	0
CGGTGCACCCCTATAT	ref_5868_new	82	142	97	94	125	72	163	71	139	54
TTTGCATCCATTGCTC	ref_5868_new	11	25	8	18	31	9	26	7	17	12
CTCATCCTAGAAATTT	ref_5868_new	15	37	20	11	30	10	40	9	36	12
GTATCATCCTTGATTC	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TATTGCCGTCGTTACG	ref_5868_new	11	13	7	5	20	4	15	8	10	5
ATCGTGGGTTCTAATC	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TTATTTAAGTCCCTAG	ref_5868_new	7	5	4	6	8	3	9	2	4	4
CCTCTGCCGCGTCGCA	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TTATTATTGTTTGCAT	ref_5868_new	11	19	12	11	31	6	18	10	32	6
TCTTGTTATAGTGATT	ref_5868_new	1	0	0	0	3	0	2	0	1	0
CGTGGATGGGAGTGCG	ref_5868_new	15	28	16	15	34	8	20	4	32	14
AAAGGTCCATTCGCAC	ref_5868_new	8	15	8	5	20	14	15	3	24	6
AAGAGACCGGACTACT	ref_5868_new	17	22	27	14	28	25	40	12	40	15
ATTTTCGTTCAGTCAG	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TCTGTCACGATTTTAT	ref_5868_new	0	0	0	0	0	0	0	0	0	0
GATGCGTGACCACTGA	ref_5868_new	5	13	5	4	5	10	16	4	11	4
TCAGAGGCAAAAAAGG	ref_5868_new	65	94	80	62	95	53	97	54	112	70
TCACGCACGCTCTGCA	ref_5868_new	0	0	0	0	0	0	0	0	0	0
TGCCTGTTCGTCGGTA	ref_5868_new	50	146	93	61	140	57	133	60	156	75
TGATGACCATAAGTAT	alt_3855_missing	10	11	17	7	12	14	16	11	16	5
GGATAATGCGGCGTTC	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
GGGAACGAACGTCTTT	alt_3855_missing	9	16	3	5	7	7	13	7	11	2
CGTAGGACCGGCTAAT	alt_3855_missing	39	52	39	36	53	42	53	33	52	37
GTCCACTTCTTAGCCC	alt_3855_missing	46	73	43	45	74	40	79	41	84	32
TCTCGCTCCGGTCTTA	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
GATGATTGCCTTTTAG	alt_3855_missing	235	396	261	234	436	236	423	223	435	186
CCCGGTGATTATGATG	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
CTCCGCCCCGTGAGTT	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
TGACATGGCAACACGG	alt_3855_missing	36	64	39	20	53	50	84	29	61	36
TAGACTATGCTCGTCT	alt_3855_missing	6	10	7	5	15	4	12	3	16	7
AGGTAAGGTGTTTTTG	alt_3855_missing	23	34	28	29	42	25	33	20	32	7
ACTCGGGGGCGAATGA	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTATATTTTTAG	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTGCGGTAAATT	alt_3855_missing	29	61	40	26	55	26	60	19	68	36
TTCTAGAAAGGTCGAG	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
CTCGGGAGGTACAAAT	alt_3855_missing	19	54	31	21	67	14	51	12	40	31
CTCTGCCCCGTGAGTT	alt_3855_missing	60	93	86	47	89	71	106	59	109	65
TATATCTTGTTACCTG	alt_3855_missing	2	12	10	1	9	7	5	2	7	6
ATCTAATTTATGTACA	alt_3855_missing	0	0	0	0	0	0	0	0	0	0
CTAAAATTCAATTAAG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TGTCGGCACAGTATGA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TTGCTGCGTACATATT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TCATCTGCCTCCATCC	ref_1427_missing	15	26	15	16	18	28	21	24	32	16
ACCTCGCCGCACCATG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CCTCACGTGCTCACAT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TATCCCCTGTTAGGCT	ref_1427_missing	13	21	16	9	23	12	20	5	22	10
CGTTTTTCTTTTGTCC	ref_1427_missing	16	30	38	25	43	28	26	31	61	24
GAGCTTATTCTTTGGA	ref_1427_missing	28	49	27	42	52	57	42	34	50	27
GGCATTGGTTAACAGG	ref_1427_missing	18	22	24	15	34	23	14	20	23	19
GCCATCTCTCGAAGAT	ref_1427_missing	17	20	24	16	18	18	28	23	26	20
ACCCAATCACAAGTAA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CTAATTGGTGATCTCA	ref_1427_missing	66	78	50	56	76	37	69	32	63	40
ACCACGTCACGCGCTA	ref_1427_missing	32	46	37	31	47	20	45	33	67	37
TTGGTCTAACTGAGGA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TGATTACCTGTACATT	ref_1427_missing	3	11	5	6	9	4	22	8	19	6
CTCTGAGACAGGGGTA	ref_1427_missing	15	19	14	21	22	17	29	12	25	11
CTGCTTAAGCCTGCCT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
GTTCCTCTGTCATTTA	ref_1427_missing	51	79	46	37	80	30	102	39	99	43
GGTTCATTCCGGATAG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CTAGACCTTCGCCAAT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
GGAAGTCGGCTAACTA	ref_1427_missing	89	151	137	92	169	110	161	105	154	84
GTGTGGATCGATTTAC	ref_1427_missing	4	8	4	6	14	6	10	4	4	8
GTTACTCAGTATCCTG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TAAAGATCATTTCAAC	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
GGTTCCAGTCACGTCG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TAAACGTTTTTCCATA	ref_1427_missing	3	4	3	9	7	9	6	4	8	1
GGCAACCGGCCTGATC	ref_1427_missing	11	15	9	9	18	14	20	10	16	11
GAGGCTTGTGATATAC	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTGCGGAGTTTG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CGTATCTGTAACATCC	ref_1427_missing	31	51	46	38	62	29	62	32	59	24
TATGCAACGTCTTCAA	ref_1427_missing	7	23	11	10	13	11	12	9	13	6
CCCGGTGGAAGAGCCA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TGTAAACATTGCATCA	ref_1427_missing	60	28	71	50	51	65	41	59	51	50
GCTTTGCTACCCCCTA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TCCTATGTCCGGAGCG	ref_1427_missing	20	23	12	22	18	17	32	20	16	15
CGCCTCACACACTCGT	ref_1427_missing	18	23	24	25	29	22	41	19	26	21
TAACCTCCGTAACCTA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CCATCTTGTGTATCGG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CAAACGTGCAAGTTAT	ref_1427_missing	10	22	8	5	18	8	25	15	29	10
GAGATGCGCTCTCCGC	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
ATGGCCCCTTTCAATT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TCCGCCTTTACAGGAT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TGTTTGGTTACGCTTA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
GTGTTCTTCTTCCCTA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TCGCAACTATCCTTCG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TGTGTTACATGGGACA	ref_1427_missing	21	44	34	26	49	19	53	20	49	24
TCGCCCGGAAGCACTG	ref_1427_missing	4	10	9	6	12	4	9	11	18	6
GGGTCAGTGCAGTTGT	ref_1427_missing	36	52	36	32	41	34	50	26	50	21
TTCGGCGTTTATAGAA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TCATGCTTCGAGTCTC	ref_1427_missing	9	7	9	18	15	3	20	10	22	5
TTAATCTTAGATTCTA	ref_1427_missing	135	181	157	151	167	112	237	109	225	133
ATACTGGCTCCAATGG	ref_1427_missing	26	28	20	14	33	21	37	23	35	20
AGGCGTATAACAATTG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTGAATGTTGTT	ref_1427_missing	2	0	0	4	1	0	1	1	1	1
TTGACATATTTTCGTG	ref_1427_missing	6	11	4	1	7	3	6	3	4	2
AGCAATGAGTCTTCCC	ref_1427_missing	43	70	64	47	97	45	87	45	98	44
CGCGGCCGTCAGGAAC	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TCGAATGGTCATGCTA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CCTTGATACTCTCCTA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CCTTTGGTGCACTATG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TGATGAGTTTGAGTTT	ref_1427_missing	10	24	17	7	13	18	17	6	14	10
ATTGGCCCTTTGTATT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CTAGATAGTTCAGCAT	ref_1427_missing	4	12	14	10	15	5	14	3	13	9
TGTTTTGCTCATTTAT	ref_1427_missing	108	146	119	84	137	84	131	80	138	84
CGTTGTTTTACGTATG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TTAAGAAGCATCGTGT	ref_1427_missing	8	13	13	12	14	11	20	6	6	10
GTCTCGGCACCTAGCA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
CTTAGGGGAGTTTGAT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
GTCCTCATCTGTGGAG	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
GTAATTTCCGATAGTA	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
ATTGCATAAATATGAT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TGTGCTCGGTCTCTGT	ref_1427_missing	0	0	0	0	0	0	0	0	0	0
TTCCCAAGTCTACACC	ref_1427_missing	3	3	2	1	4	0	4	4	8	4
CACTAGGTGAAAGTAC	ref_1427_missing	77	166	103	99	147	94	151	89	155	84
ACTAACTTGTACTCAA	ref_731_negative	20	29	12	25	38	12	42	12	45	19
GCAGTAACCTGGACCT	ref_731_negative	0	0	0	0	0	0	0	0	0	0
CTTCCTGTTAGTCTCT	ref_731_negative	62	103	64	77	98	69	88	69	96	42
CAGGTCCTAAGGTTTG	ref_731_negative	0	0	0	0	0	0	0	0	0	0
GATTTCCGGTTCCATC	ref_731_negative	5	9	12	6	9	5	10	6	5	5
TCGAGGTTGCACATGT	ref_731_negative	61	104	83	69	118	70	133	60	126	49
TCGATCGGGTGTTCAC	ref_731_negative	3	11	9	4	12	3	11	2	15	4
ACGTTTAAACAGGTTT	ref_731_negative	66	104	83	68	146	50	103	75	103	51
AAGTTACTTTTGTCTC	ref_731_negative	67	106	72	61	114	73	132	50	124	58
AGAGCATATTAAGCTG	ref_731_negative	23	18	18	13	30	31	37	27	28	25
CTCCTATTTATTGCTA	ref_731_negative	18	24	16	20	24	14	31	16	27	13
CTCCAATCATCTGACG	ref_731_negative	0	0	0	0	0	0	0	0	0	0
AAGCAAGTGAATGTCT	ref_731_negative	0	0	0	0	0	0	0	0	0	0
CACGCATCTTATGTAT	ref_731_negative	0	0	0	0	0	0	0	0	0	0
TAGCCGTTGTCACGAA	ref_731_negative	6	18	14	13	13	9	11	6	13	7
TATTCCGCTGCGGCAG	ref_731_negative	0	0	0	0	0	0	0	0	0	0
ACGGTCCCACCGGGTA	ref_731_negative	29	71	52	44	53	34	57	37	52	44
ATGTCAACGTCGTAAA	ref_731_negative	0	0	0	0	0	0	0	0	0	0
ATGCTCAAGTACCCGT	ref_731_negative	38	60	34	41	59	33	80	23	64	44
AATTAGTATCGTTGGG	ref_731_negative	30	30	22	15	25	19	26	13	36	15
GACTTTGATCACATTT	ref_731_negative	8	18	14	14	23	11	9	2	16	5
CAGCGCCAGGCCGTCC	ref_731_negative	14	18	14	5	14	11	17	8	17	11
CCATTGTTGAGGCTCT	ref_731_negative	0	0	0	0	0	0	0	0	0	0
GTATATGCTAGCAGTT	ref_731_negative	17	37	25	17	20	20	40	11	20	10
TGAAAGATTGGACTCC	ref_731_negative	7	25	8	11	12	14	12	4	12	5
TGCTCTCCCGTTTTAT	ref_731_negative	0	0	0	0	0	0	0	0	0	0
TTCCATTCGGATCTTG	ref_731_negative	90	136	102	78	139	85	144	82	156	67
CCCAATTCGTGCGCAG	ref_731_negative	14	13	9	3	23	11	22	8	15	7
GTGGACATTTGATGAC	ref_731_negative	9	29	25	19	30	25	29	14	25	16
ACCACGTAAATAAACA	ref_731_negative	54	104	68	62	85	50	83	60	99	47
TAGGATGTCCTGCTGC	ref_731_negative	29	55	27	27	35	16	33	23	34	20
ATACGGGCTGATTCCC	ref_731_negative	19	38	21	15	24	23	34	21	46	14
ATGGGTCATAATGACT	ref_731_negative	0	0	0	0	0	0	0	0	0	0
ACTCCTTACGCTCCAG	ref_731_negative	101	153	103	70	161	101	162	83	181	83
CCAAATTTCCGTGCGG	ref_731_negative	31	40	22	21	28	21	43	22	49	20
GCACGCTTATAGTGAG	ref_731_negative	0	0	0	0	0	0	0	0	0	0
AGAAACTTCGCCGTTA	ref_731_negative	13	18	22	16	35	21	38	13	35	16
CTTCTAGTCCGAGGAC	ref_731_negative	8	20	26	11	34	21	30	15	29	15
CTTTCGTACATGGTAC	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TTTGGCGAACCTGCTC	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
GCTACTGGCTGCTTGG	alt_1772_missing	4	3	5	3	3	1	4	4	5	3
ATGGTTCAGCGTTCGA	alt_1772_missing	24	51	25	22	34	21	36	18	43	11
TCTCTGGGTACTTTCG	alt_1772_missing	16	23	18	22	20	23	28	20	19	23
ATTAGTGTCCGTCAGC	alt_1772_missing	30	45	37	35	55	36	40	32	48	36
TACCCGCAATAAGTGA	alt_1772_missing	38	37	31	32	46	40	40	33	42	24
CTTGGTGAAAGGGCCC	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
CTTGCACTGGTCACGA	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
AGCGCTCTGGTGCCTG	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TAGTGTTATCCAAGAT	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TTTTGCCATATCAGTA	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TGGGTTTATCGGGCCC	alt_1772_missing	68	85	109	66	105	63	106	75	95	61
TTAGTTTGTCTAAATG	alt_1772_missing	20	27	17	12	31	12	29	20	23	24
GTGGACCTTGTTAGTT	alt_1772_missing	53	74	65	52	77	53	96	35	88	49
AGGGTGACCCATTTGA	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTGCTTGTTGGA	alt_1772_missing	15	22	22	11	25	16	28	12	20	8
AGTTAACGGGGGGTAT	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TACACCAGCCCCTATC	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
ATCTACGCATCACCTA	alt_1772_missing	13	16	19	8	13	4	22	10	28	7
ATTCCGGAAATAATGC	alt_1772_missing	33	14	26	13	34	13	31	19	17	13
ATTCCGGCAGCAAGCC	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TTACCTGCAAGGGGTA	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
CCACTATCGATACATG	alt_1772_missing	3	5	6	6	0	11	6	1	11	3
AACGCAACGGGTTGCT	alt_1772_missing	15	24	17	14	17	13	30	15	17	17
ACCACCTTACCGGTCG	alt_1772_missing	15	20	22	19	22	7	33	14	23	14
GTATTCTGTTTAGCCT	alt_1772_missing	17	27	18	14	21	12	23	23	28	17
TGTACTGATGGGTTTG	alt_1772_missing	31	37	26	25	25	23	58	30	33	27
ATACGCAGTCTTTTTC	alt_1772_missing	27	37	34	21	30	19	32	23	28	14
GATCGTCTTTGATTCA	alt_1772_missing	40	46	44	33	56	25	55	32	62	34
TCAACCTTATTGATAT	alt_1772_missing	30	66	34	43	61	30	60	33	63	31
AAGATTAAGAATATGA	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TTGTTATTGCATTGAT	alt_1772_missing	3	11	21	13	18	12	18	11	10	14
GACTGTTATGTGGTAT	alt_1772_missing	22	34	27	10	44	11	38	21	33	22
TTGTTATTGCTTGAGC	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
GGTTCTTCACTGATCT	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
TACGCGCGTAGTATTT	alt_1772_missing	38	46	61	50	60	44	74	42	81	28
GATGAATGGACTGTTT	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
CTTGTTAGGAAGTGAC	alt_1772_missing	0	0	0	0	0	0	0	0	0	0
ATGCTCGTTGCATGTA	alt_1772_missing	7	8	6	10	6	5	10	0	7	3
TAAGCGTTCGCCTTCC	alt_1772_missing	6	11	2	7	10	9	9	3	15	6
ATATATATGGATGAAT	alt_1772_missing	6	7	8	4	7	11	2	1	12	3
GTATTTACACAGAGTT	alt_4437_missing	19	29	24	18	17	36	20	12	33	17
CATCGACGTTAGTCCG	alt_4437_missing	4	1	1	0	4	5	5	4	9	2
AGTCTATTTGGTGCGA	alt_4437_missing	110	131	140	125	106	104	160	108	141	87
CCCGCAAATTGAATCC	alt_4437_missing	0	0	0	0	0	0	0	0	0	0
ATTTGGCCCCTCATAC	alt_4437_missing	29	23	43	26	36	29	41	36	34	29
TCTCGAATGACGTTGA	alt_4437_missing	52	50	55	62	59	57	60	77	74	52
TGACCCTATTCTGTTG	alt_4437_missing	27	34	38	30	28	30	29	30	18	17
TGTTGTTACATCTTCG	alt_4437_missing	109	106	128	114	113	82	90	92	122	83
AGAATACGGGTGTATT	alt_4437_missing	16	19	13	13	26	15	22	23	21	13
TTGTTTGGTAAGTCGG	alt_4437_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTCAGGAGCGCA	alt_4437_missing	70	98	89	71	81	75	84	75	71	61
CATGAAGTCTGGAAGC	alt_4437_missing	16	16	15	19	7	20	13	10	14	17
GATTCCCATTAATGCG	alt_4437_missing	0	0	0	0	0	0	0	0	0	0
GTGTTTGTATAGCCTC	alt_4437_missing	30	45	39	36	57	33	51	33	42	38
TCATGTAGCCACTGCC	alt_4437_missing	34	24	36	30	27	25	36	21	34	25
TGCCCCTGGCGATCTG	alt_4437_missing	8	8	13	10	10	3	10	6	14	17
GTACCTCTTAAATTTG	alt_4437_missing	49	55	39	36	70	32	49	34	59	33
TATTAAATTCGCAACA	alt_4437_missing	14	20	19	13	17	8	14	10	10	11
GCAACAACCACGCGGA	alt_4437_missing	53	47	60	44	61	41	62	58	50	46
CAACAATCCGTCTCAC	alt_4437_missing	0	0	0	0	0	0	0	0	0	0
TGTACTCCCCTGCGAA	alt_4437_missing	0	0	0	0	0	0	0	0	0	0
CGGAGTTAATGACGCA	alt_4437_missing	6	9	11	8	8	4	5	5	9	7
CCTAGTGAGTACGTCC	alt_4437_missing	13	11	13	19	12	22	13	14	19	15
TGCCCCTAGCGATCTG	alt_4437_missing	11	11	15	9	9	11	16	12	11	6
ATATTCTATCCTAGTA	alt_4437_missing	125	140	140	123	172	126	133	141	135	85
ATCCGCATAGCACGCC	alt_4437_missing	21	18	22	17	30	13	19	29	28	20
AGCAAAGCCTTCCGCG	alt_4437_missing	0	0	0	0	0	0	0	0	0	0
CATAAGATCGGACGAT	ref_5938_new	0	0	0	0	0	0	0	0	0	0
ATCTGGGGGATGGCGC	ref_5938_new	0	0	0	0	0	0	0	0	0	0
AGGAAGATTCTAAGGT	ref_5938_new	11	9	10	14	11	19	13	19	12	13
GGCAAGGTAGAATTTA	ref_5938_new	75	40	76	65	32	63	41	53	29	53
TCTGAAATGTAATCGT	ref_5938_new	0	0	0	0	0	0	0	0	0	0
CCCCTGTTTGGCTTTA	ref_5938_new	38	34	24	37	18	39	31	35	29	20
ACTCTGTGTAGTTTTC	ref_5938_new	0	0	0	0	0	0	0	0	0	0
GCTACAGTCATCACTT	ref_5938_new	9	5	13	12	12	11	12	12	7	12
GATTGCATAATGGGAG	ref_5938_new	0	0	0	0	0	0	0	0	0	0
CTCGGTCCCGGTCGAG	ref_5938_new	413	239	554	465	256	433	239	429	271	364
TCACAGATGTTTACGC	ref_5938_new	55	34	68	71	29	62	29	53	26	53
ATTTCCAATTCTCCGA	ref_5938_new	0	0	0	0	0	0	0	0	0	0
AGGTCGAAAGGGTCGC	ref_5938_new	69	40	97	72	46	69	41	74	45	77
ACGGAATTATGTTTGT	ref_5938_new	37	16	53	41	30	37	24	33	31	32
CACGCCCGATCTCCTC	ref_6074_new	23	32	39	28	58	28	46	33	34	22
TCCCGATACTTTGATA	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TGTCTATGAAATCTTA	ref_6074_new	2	1	1	4	1	3	2	2	2	1
ACATGTTCATGGCGCG	ref_6074_new	7	4	5	6	8	7	11	4	9	2
AATATCGTCACTAAAC	ref_6074_new	22	32	33	23	17	18	24	30	27	28
CCCTAAATTCGATCAA	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GCTATTCTAAATTGCC	ref_6074_new	0	0	0	0	0	0	0	0	0	0
AATGTTGTCATACGTG	ref_6074_new	3	5	5	8	4	5	6	6	7	2
AGCATCTACCTTTAAT	ref_6074_new	33	53	36	42	53	27	42	18	37	31
CCATCTATTGTTCGCG	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GGTTCCGACGGGAGAA	ref_6074_new	0	0	0	0	0	0	0	0	0	0
AGCCGGGCGTCTGGTG	ref_6074_new	14	28	18	21	16	11	21	17	23	26
AAGTGGTGTTGTTTTT	ref_6074_new	26	30	34	26	25	29	34	37	24	25
TGGTCTTAGAGACTTG	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TGCTCACCGGGGGTTA	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GATACTATTTGAGGTC	ref_6074_new	20	37	43	25	39	25	43	32	47	49
TTATCTCCAACTATTC	ref_6074_new	22	18	35	12	29	18	18	17	21	22
GAACGAAGGCAATATC	ref_6074_new	20	22	34	24	24	28	22	15	40	21
ATGATGAGCTTCCTTA	ref_6074_new	0	0	0	0	0	0	0	0	0	0
AGATAGTGTCGGTTTC	ref_6074_new	0	0	0	0	0	0	0	0	0	0
AGCAGGCGTTATTCGA	ref_6074_new	30	49	36	40	30	19	41	29	35	23
TTCCTTAGCCCTGCCC	ref_6074_new	22	39	38	32	42	16	46	22	33	32
GTGGCCAGTAACCCTG	ref_6074_new	9	5	4	11	4	5	11	9	8	2
CTAGCGCACGGGTATG	ref_6074_new	15	27	13	9	20	15	16	12	30	16
TTCGTTCTAGAACAGT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TTGCCTGGGTCCGTAA	ref_6074_new	22	34	30	19	39	22	38	29	30	24
TTCCTCTTGGCTATTT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GCCTGACTGTTTGGGG	ref_6074_new	5	9	10	5	19	11	19	6	13	9
ATGTACCTATCCATCT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
AATCTTTCGAGTCATA	ref_6074_new	66	64	70	69	96	79	73	58	69	50
AAGTTCTGCCGATTGT	ref_6074_new	5	4	9	2	4	1	4	1	5	1
TTCGCATCGATGCCGG	ref_6074_new	62	73	91	65	65	69	72	68	78	70
TATGTCAAGGTACTCT	ref_6074_new	14	17	9	14	16	14	30	13	12	16
TCAGGCTTCTGTTACT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GCTCTTTTCACGTCAA	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TGATACGAACCGCTCT	ref_6074_new	4	7	8	3	7	5	5	6	5	10
CGCTCCGGGGGGACTT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
CAGCTGGAACTTCGCG	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TTAAGGAATTGTTGGG	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TTATCCCCTTATTGAA	ref_6074_new	0	0	0	0	0	0	0	0	0	0
ACCACTTATGACCGTT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GGCCTAGATCCGATGC	ref_6074_new	14	19	26	26	33	14	22	21	29	16
GTCTAGTGATACCGGT	ref_6074_new	10	21	16	18	27	11	30	9	16	18
CAACGTCCATTGATAA	ref_6074_new	3	11	5	6	6	5	12	8	14	4
AGTTTTATATTGGGGT	ref_6074_new	18	36	25	19	18	13	17	22	26	6
TGATTGCTTGACCTGT	ref_6074_new	9	3	1	11	8	2	6	6	7	8
CGATACGTTTGTTGGG	ref_6074_new	14	23	17	14	13	17	19	10	35	17
CATGCTTATTGGATAC	ref_6074_new	0	0	0	0	0	0	0	0	0	0
CGAGAGATACCGTATG	ref_6074_new	0	0	0	0	0	0	0	0	0	0
ACGCTCTATGGACGCG	ref_6074_new	16	13	9	13	13	11	7	12	9	3
GTGCTCAGTATGAGCG	ref_6074_new	25	45	26	24	44	21	32	21	36	9
CTCTACACACTTAAGG	ref_6074_new	0	7	13	7	6	4	9	5	10	8
CCCGTCGCTTATGCAC	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GTCGGAGACAATGTAC	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TTGTCGTTTTTAGGCG	ref_6074_new	26	45	54	34	45	33	36	45	39	33
TAAGGCAAGGTACACG	ref_6074_new	3	15	9	4	8	3	7	5	17	4
TCACGTTAATACCTCT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TGCCTTGGTAGATTAT	ref_6074_new	12	18	17	14	16	18	20	13	19	16
ACGCAACACGCCCATG	ref_6074_new	17	33	10	19	30	25	28	12	30	17
TCCCGGGTCGGCGCGG	ref_6074_new	39	52	43	43	56	27	53	31	54	27
TCCACTTAACGGTTCT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
GCATTTGTAAATCGCG	ref_6074_new	5	11	10	2	9	5	3	6	3	5
GCCAACGTCTAGTCAT	ref_6074_new	0	0	0	0	0	0	0	0	0	0
TAGGACTTCGATTAGG	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
TACGGGGTGATCCCAG	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
GGAACGTGTTCACGCG	alt_4424_missing	20	18	21	20	27	14	35	13	41	18
TCCGTTCAGTCGAATC	alt_4424_missing	50	51	38	35	69	32	61	33	63	41
CCACTGATCACACACA	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
TCTCTTTTCCTCCTAA	alt_4424_missing	48	65	74	45	83	53	86	52	99	69
CCTCGTGTCGTGGTGA	alt_4424_missing	69	103	71	49	122	70	110	78	121	65
AGTAAACCATCATGTG	alt_4424_missing	47	55	46	25	56	27	87	28	58	28
GCCCATGTGACAGTAT	alt_4424_missing	15	34	24	16	36	13	21	11	49	10
GATTAGGTCTCCTCCC	alt_4424_missing	12	14	10	13	19	6	27	7	25	9
TCCTATTGCGCGATCC	alt_4424_missing	69	106	79	68	122	65	130	58	103	59
TCCTGGCGTTCGATCA	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
GCCCAATAACTTAGTA	alt_4424_missing	16	17	14	14	35	14	38	8	25	9
CAGCTCGCCGACTGGT	alt_4424_missing	7	9	3	0	10	5	8	0	6	2
TTATGCCATTTCTCCG	alt_4424_missing	12	19	20	12	22	17	31	11	26	9
GTGATAGCAGGGCATG	alt_4424_missing	41	63	59	52	76	48	90	43	96	30
AATCTTTGGCGTATCA	alt_4424_missing	46	114	74	49	102	47	109	56	126	60
TTCACCCACCCTTAAT	alt_4424_missing	16	12	6	7	19	13	28	10	30	8
GGTATAGAGTCGCTTC	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
AGCCTACTACATAGCA	alt_4424_missing	0	1	2	0	1	0	0	0	0	2
AACGGAACTACAATTT	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
TCCGTCGATCGTTTTT	alt_4424_missing	17	58	28	36	48	23	67	24	61	22
AGGGTCATCCCATGCG	alt_4424_missing	14	24	10	10	28	9	33	15	17	14
CCGGTTATCATCTTAT	alt_4424_missing	45	73	40	38	59	46	80	43	80	27
TCGCATTCCCGTGCCC	alt_4424_missing	1	1	3	1	2	7	3	4	4	5
GTAGGGTACTTTAATT	alt_4424_missing	11	21	13	25	28	14	37	13	30	7
CGTCCAGGCTGGAACC	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
ATATACTATAAGTGTG	alt_4424_missing	19	59	34	36	49	24	57	23	76	37
TCTGATGTTTTTTCCC	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
GTCTTTTCAACCATGG	alt_4424_missing	5	4	7	5	11	6	12	2	4	4
TTTTCTATTTATAGGA	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
TACGTCAAGGACTAAG	alt_4424_missing	11	22	13	13	18	7	17	8	16	11
GGTTTTTGCTCCAGCT	alt_4424_missing	26	59	28	26	59	29	56	25	46	36
TTGATATAATACTCGC	alt_4424_missing	24	42	19	13	40	13	44	22	49	19
CCACTATGTCCGAGCA	alt_4424_missing	7	20	14	13	33	10	28	16	46	10
GCTTAACTCTACACTC	alt_4424_missing	0	0	0	0	0	0	0	0	0	0
AACCTGATAGCCTCGC	ref_5669_new	25	50	18	26	35	18	35	30	43	28
GTTATTCCTCCGGGGA	ref_5669_new	82	86	120	67	86	83	115	75	98	96
TGAGGCTTTTTGCTTC	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TTTATCCTCCTGATGC	ref_5669_new	68	123	86	71	101	65	111	55	104	40
ATTACCCACCCGGAGG	ref_5669_new	4	3	12	7	11	12	12	6	12	7
CCGGTATTACATTTAG	ref_5669_new	3	8	8	1	6	1	6	7	10	2
GGATCTTGATTTCGCT	ref_5669_new	8	3	3	7	5	6	2	6	5	8
CTTAATGCAAATAGCT	ref_5669_new	20	15	24	8	18	13	21	9	24	19
TAGGTCCAAAGTTCTG	ref_5669_new	0	0	0	0	0	0	0	0	0	0
ATCTGGGATGGCGATC	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CAATCCCGTTATCACC	ref_5669_new	6	4	3	1	4	3	6	2	6	2
TGGTTATTTATTGTAC	ref_5669_new	31	20	30	23	23	15	25	20	28	15
CGGTGCTCCTTAGTAC	ref_5669_new	10	6	0	3	5	5	5	6	8	4
ATCACACCCGGGCTAG	ref_5669_new	33	52	48	34	48	40	56	30	40	36
CTTTCACGGATGGGCA	ref_5669_new	4	9	15	6	5	9	4	2	10	7
ACGAGTGGAATTGAGT	ref_5669_new	24	31	33	21	31	18	16	16	26	15
TCCCCTTGCCTGAGCA	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CCAGACGTACCATCAC	ref_5669_new	75	113	91	87	108	75	110	74	126	68
TATGCGGTCATTGAAG	ref_5669_new	34	56	40	35	46	34	28	27	40	25
CATCAAAATGTTTGTA	ref_5669_new	7	12	9	16	8	9	11	11	7	7
GACCGGGCCTTCGTAC	ref_5669_new	29	41	29	25	47	40	47	26	37	17
GCACGCACGTATATAC	ref_5669_new	25	29	30	13	21	30	29	21	31	27
GGGCGCCGAAGCTGCT	ref_5669_new	9	8	16	10	7	10	12	10	6	4
TCATGTGCGACAGGTA	ref_5669_new	0	0	0	0	0	0	0	0	0	0
GAAGTCTATGGCCCCA	ref_5669_new	32	30	52	47	35	32	48	30	32	33
ATTTTATTAGGTCGCA	ref_5669_new	52	53	67	56	52	72	84	61	61	65
GATTCTAGTTTCTATT	ref_5669_new	13	14	23	13	23	17	30	21	15	15
CCAAGTGTCGATTAAC	ref_5669_new	14	18	18	19	17	9	9	15	15	16
TATCGTTGACGATACT	ref_5669_new	21	18	16	20	21	22	19	16	22	24
GAAGTTTTCTTATAAA	ref_5669_new	30	24	22	12	19	23	27	21	21	28
TCTGTATCACGAAACT	ref_5669_new	38	35	41	35	52	36	33	39	41	30
GCATAGCCTTTATTTC	ref_5669_new	9	1	5	4	8	7	14	7	11	14
ACGAGCAAACTAGGTA	ref_5669_new	14	12	13	11	14	17	8	10	11	6
GGACAATACCGCCATC	ref_5669_new	63	51	58	41	54	62	50	47	76	53
GTCGACCGTTGAGTGT	ref_5669_new	29	28	32	20	21	33	29	29	34	20
GTGACATTCGTATGCC	ref_5669_new	74	74	96	73	77	68	78	92	100	63
ACGTTCAAGTACGTGT	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CAGGGTAATTTAAGTG	ref_5669_new	0	0	0	0	0	0	0	0	0	0
GCCTGCCGCACTAAGG	ref_5669_new	15	23	29	19	14	20	18	23	30	9
GGACATACTGCCGCAA	ref_5669_new	9	13	21	17	7	18	11	13	11	9
TGGAACACCAGATCGC	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TGAAATATCGCTCATA	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CGCGTTAGCCTCATTT	ref_5669_new	74	123	115	78	153	79	138	84	136	68
CGGCTTGTATGTAGGA	ref_5669_new	278	310	343	294	314	289	354	274	338	284
CGGGAATTGTTAGCTT	ref_5669_new	34	31	43	36	50	34	19	32	38	26
ATCGAGATTATATGTA	ref_5669_new	244	245	257	238	278	216	284	224	273	205
TAGTTGGTTTTGCGGA	ref_5669_new	36	49	64	46	59	31	55	38	56	35
CTGAAGATTCTCACTC	ref_5669_new	108	109	145	139	108	102	119	133	136	94
TGACCTGGAATTGCTA	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TCAGTACGGGTAATCT	ref_5669_new	88	60	92	82	85	73	87	61	82	68
TCCGGTTTTCTACCGC	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TATCGAGTCGCGTTAG	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TTCCTTCAGACTTTCC	ref_5669_new	49	52	57	48	43	27	40	36	35	44
TTTCTGTCTTATGTAG	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TTGGTGCTTGTCTACC	ref_5669_new	6	15	5	3	15	9	6	8	13	9
CGTACTGGGTGTCACT	ref_5669_new	0	0	0	0	0	0	0	0	0	0
GTTAATCATCTGTATA	ref_5669_new	45	34	63	47	41	42	41	46	50	40
TTGTCCGGCCTTCACC	ref_5669_new	5	8	1	2	8	4	9	5	8	0
GCTATTCGAACAACGT	ref_5669_new	5	9	9	11	20	11	21	12	13	6
TGTAAATCCTTTACTT	ref_5669_new	27	40	30	23	33	27	26	22	26	21
CTCTTCCAGGGAGGTC	ref_5669_new	60	67	74	65	64	43	79	74	88	56
GACGCTATAAGAGCCC	ref_5669_new	8	4	7	6	5	6	7	5	6	6
TTACTCATATCGGTAA	ref_5669_new	52	79	83	66	78	55	81	79	80	44
TTTCAATATCAACGAC	ref_5669_new	22	18	26	25	21	15	25	20	32	15
CTATTACTTATACACG	ref_5669_new	61	58	73	55	72	70	65	59	113	59
TTTCCCATCCCATCTA	ref_5669_new	38	33	31	32	32	29	31	33	28	25
TCCCAGATAGGGGATT	ref_5669_new	3	1	3	5	6	1	3	3	2	4
GACGTGTTGACTAGAG	ref_5669_new	29	48	38	24	39	30	44	26	48	30
GAACTTATAGGCTTTC	ref_5669_new	194	180	206	181	167	184	196	172	199	140
AACACTTGAAGCCCGT	ref_5669_new	10	4	10	6	7	6	4	6	15	9
CAATTTCGTCCGGCTG	ref_5669_new	80	96	89	80	88	76	92	80	78	66
CACCATTTGACGTCGT	ref_5669_new	61	78	48	49	52	50	68	56	74	56
GGTGCGACGTCATTTT	ref_5669_new	328	335	356	343	332	320	349	319	383	303
TACTACCTCACCATAG	ref_5669_new	43	67	66	66	66	42	67	43	73	40
GGCGTTACGTGGCCCG	ref_5669_new	11	17	24	19	18	28	21	20	18	29
GCGTTATACGTGTGGC	ref_5669_new	42	58	68	47	53	45	68	40	76	41
GTTTGTATTCTCTTGG	ref_5669_new	2	2	6	2	5	3	4	3	3	1
GAAAATGTGAGTCTCT	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CAAGCTGTTTGGACAA	ref_5669_new	0	0	0	0	0	0	0	0	0	0
GTTGTCTTTTCTGTTA	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CTCAGGTGTGTGCGCC	ref_5669_new	4	18	8	9	12	8	14	5	9	8
ACTTCATAGGTAGTCC	ref_5669_new	19	19	21	31	29	30	27	20	33	22
GGCAATCAAGACCTGT	ref_5669_new	53	51	72	53	55	42	68	40	45	60
AGGATCGCTTGAAGAT	ref_5669_new	49	34	43	35	38	45	33	38	44	39
ACATGTTCTCATGGCT	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TAAATATTCGGCCCAT	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CTGATGACTCATTGCC	ref_5669_new	0	0	0	0	0	0	0	0	0	0
GCTGTCAGCTAATGGA	ref_5669_new	36	45	39	40	52	38	54	46	45	36
GTGATTTCTGCGGTCG	ref_5669_new	0	0	0	0	0	0	0	0	0	0
ATTATCAATTCTTGGG	ref_5669_new	76	81	84	61	90	68	89	56	85	71
TGGGGGAGTTTAGATC	ref_5669_new	20	20	29	12	14	14	20	15	21	33
TTTGATTATGAGGCCG	ref_5669_new	0	0	0	0	0	0	0	0	0	0
CTATCGCACTCTGTAA	ref_5669_new	20	19	12	27	19	15	19	11	28	11
CCAACGGCACACTTGT	ref_5669_new	83	87	82	65	85	67	95	67	100	69
AGGCTGTGAGCTGAGA	ref_5669_new	17	16	24	13	16	16	17	12	20	12
ACTCCTCCCGTTCGTC	ref_5669_new	33	57	42	29	93	25	78	30	55	27
GGATGTATTGCTGGGT	ref_5669_new	0	0	0	0	0	0	0	0	0	0
AACGATCTATCTACAT	ref_5669_new	23	27	26	19	34	26	28	24	21	17
TGTCATGCTTGTGAAA	ref_5669_new	0	0	0	0	0	0	0	0	0	0
TCATACTACAATCATA	ref_5669_new	62	80	91	68	75	85	70	73	57	60
CCACTGTGTTCGGACA	ref_5669_new	33	72	29	32	64	25	72	18	93	27
TAGGAACCGCATTCGT	ref_5669_new	12	21	9	17	13	13	20	13	23	9
CTTACCTGGATAGATC	ref_5669_new	13	162	20	10	148	12	167	9	211	14
TGAGTCCTTTACCATC	ref_5669_new	0	0	0	0	0	0	0	0	0	0
GTCGATTAGATGTTGC	ref_5669_new	16	25	13	14	7	12	11	6	13	15
TGATCAACTCTCAACA	ref_5669_new	20	31	20	18	20	13	14	15	22	14
CGCTCGAATTCGCTTA	alt_534_RC	1	4	3	0	3	0	2	2	3	3
GCCCACGCATCTGGCA	alt_534_RC	0	0	0	0	0	0	0	0	0	0
AGAACGCACGCCAACA	alt_534_RC	49	60	58	47	48	42	50	39	54	36
TACCGGCACTGTGGCA	alt_534_RC	13	28	41	32	38	22	30	28	39	26
CTTATAAGGGTTCCTC	alt_534_RC	19	41	34	22	43	37	36	30	38	24
TGTTCTATCCTACCAA	alt_534_RC	12	21	13	16	31	11	25	16	38	11
ACAACGAGCAATCACG	alt_534_RC	0	0	0	0	0	0	0	0	0	0
AACGCTGGTGTTATAG	alt_534_RC	72	114	83	78	123	73	110	73	108	74
TGGGTGCGTCCGTTCA	alt_534_RC	15	26	29	19	29	28	27	18	34	15
CTGGCTACGTATCGGA	alt_534_RC	0	0	0	0	0	0	0	0	0	0
CGGCAGTAGCCCTCCC	alt_534_RC	4	95	8	4	100	6	89	1	89	7
GCGGGTATCAGGGTCA	alt_534_RC	25	47	31	33	45	28	28	30	19	22
GAGTTTGATCGGTGTT	alt_534_RC	39	34	45	22	40	33	51	29	43	31
CGAAACTACGGCTATG	alt_534_RC	39	51	63	49	52	46	58	53	52	49
TGTTCTACCCTCTTAG	alt_534_RC	27	33	32	27	46	20	31	30	46	20
GCGCCTAACAAATTCA	alt_534_RC	42	54	56	50	77	55	68	43	71	40
GTTTAATAGCCCAAAC	alt_534_RC	47	58	47	41	57	35	51	45	48	56
GCCATTCTAGAACAGT	alt_534_RC	0	0	0	0	0	0	0	0	0	0
GATCGTGGTATTCTCC	alt_534_RC	49	60	54	46	66	44	40	39	54	43
AACTAAGGTTGAATCC	alt_534_RC	0	0	0	0	0	0	0	0	0	0
GAACTTGGAACAGCCC	alt_534_RC	15	10	12	9	16	8	9	7	17	4
CTGTTAAGCCACAGAA	alt_534_RC	15	13	16	10	17	15	16	8	14	14
GAAGCTTCCAGTTTAC	alt_534_RC	64	85	78	56	75	50	78	56	75	55
CCGCGGTTGTGGCTGG	alt_534_RC	0	0	0	0	0	0	0	0	0	0
CGGGTCATCCTTGCGT	alt_534_RC	0	0	0	0	0	0	0	0	0	0
TCTATTTCGCCCACCG	alt_534_RC	0	0	0	0	0	0	0	0	0	0
CTCACCGGTTTATTAA	alt_534_RC	144	351	178	170	388	109	377	118	375	140
CCTCCTGATTTAGCCC	alt_534_RC	0	0	0	0	0	0	0	0	0	0
CCCTCGTTGTGTATGT	alt_534_RC	31	49	47	25	37	25	46	26	39	36
TTTCACGATTTGGTTA	alt_534_RC	0	0	0	0	0	0	0	0	0	0
CGTGAGCGGCATGCTA	alt_534_RC	0	0	0	0	0	0	0	0	0	0
ACGTGTTTAAGTATCT	alt_534_RC	0	0	0	0	0	0	0	0	0	0
TGACGTCATAGCATAA	alt_534_RC	61	56	70	57	56	55	84	51	76	58
ACGGCTGAAAGAGGCG	alt_534_RC	42	72	45	52	69	59	66	51	82	33
CGAGCTTGACGTTGTA	alt_534_RC	27	45	43	36	39	46	50	29	46	27
AACGCATTCACGATTC	alt_534_RC	13	13	16	8	7	11	13	10	17	13
GATTATGCTCTATGGT	alt_534_RC	38	38	53	29	43	32	43	28	45	26
TATGTTGTGTTAGTTC	alt_534_RC	14	13	12	8	8	11	9	3	13	3
GGTTTCCGGGAGCACG	alt_534_RC	4	1	2	0	0	3	2	0	1	3
TGACACATTCGTTTTC	alt_534_RC	129	114	144	118	138	108	145	103	134	110
GTTCTAAGTCCCTACT	alt_534_RC	42	72	45	21	62	43	63	41	65	26
ACTAATTCGCAATTCC	alt_534_RC	71	77	73	57	69	50	79	51	65	59
CTAGCCTTTCTCCTAT	alt_534_RC	0	0	0	0	0	0	0	0	0	0
CCACCTAATGTCTCTA	alt_534_RC	11	14	10	9	12	10	10	10	15	9
GCTGATACTGTGTCAC	alt_534_RC	32	39	36	29	48	30	44	22	41	29
AGTTATCAACCTTCAT	alt_534_RC	44	57	66	53	54	54	58	56	62	44
GATCAGCTTAAAGAGG	alt_534_RC	34	36	42	20	48	31	41	26	44	21
TCCATGCATATGTCCA	alt_534_RC	11	12	12	20	28	16	19	19	33	9
GGGTGTTTCTGTGATG	alt_534_RC	13	20	28	14	27	8	24	18	25	13
CTGACATACTATACTA	alt_534_RC	19	46	28	40	43	32	53	20	41	24
CCGGAAATCGATAAAG	alt_534_RC	1	26	12	3	17	4	28	7	29	3
GCGCTCTGTAGCATTG	alt_534_RC	12	2	6	2	2	1	7	7	5	2
TTGAATCTTCCGATTC	alt_534_RC	58	55	58	52	53	52	44	54	73	50
CGCTCGTAACGACTTA	alt_534_RC	30	36	36	39	44	21	39	38	35	36
GCCTAACACCTGCACT	alt_534_RC	0	0	0	0	0	0	0	0	0	0
GATTACTGTTTTCCCG	alt_534_RC	3	1	1	0	1	1	1	1	2	0
TTGTGTTTGTGCTGGC	alt_534_RC	22	30	33	27	29	14	51	24	48	16
GGGGCTGTCAGGTAAG	alt_534_RC	81	83	92	81	69	71	84	89	78	80
CTTGTTGGGACTTCTC	alt_534_RC	19	17	27	21	35	27	35	19	34	28
CGGGCCAGTTGGGCCC	alt_534_RC	58	48	52	50	63	38	45	52	65	51
GTACACAAGCCATTTA	alt_534_RC	4	5	4	3	3	5	7	3	9	6
CGAATGGACCCAACCC	alt_534_RC	32	34	33	30	30	39	36	20	37	30
TAATGCTTTGGTCTCT	ref_556_fdr	89	117	114	87	88	72	91	101	96	79
TTTCTGGGTCCGCCAT	ref_556_fdr	56	35	72	85	48	56	52	72	49	92
TCTCGTGTTGCCGACG	ref_556_fdr	21	30	25	16	21	11	14	17	13	16
ATTCACCGTCTATCCA	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
ACCACCAGTCGCCTTC	ref_556_fdr	88	97	110	98	118	95	89	86	131	79
AATCAGGTCAACGTGG	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
GGTCAGACAAGAGAGA	ref_556_fdr	56	85	76	78	70	62	72	79	79	50
TTCCAAACGGCCCCGT	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
TGGCATCGCTATCGGC	ref_556_fdr	100	93	102	86	86	102	101	80	77	88
GGTTGTCTGTTCATGA	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
GTGCCGCTCGTCTTGA	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
GTCGTTTAAATGTGCG	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCTGTTGTCGAGC	ref_556_fdr	11	13	9	8	5	8	9	10	9	5
TCGTTACCCCTTTCAG	ref_556_fdr	8	3	1	4	2	6	2	5	12	6
GAGTGCCGTTCCGGTC	ref_556_fdr	124	131	147	135	123	110	131	101	163	100
TGCGAGATCCTGTGGA	ref_556_fdr	50	30	69	40	60	52	59	52	61	42
TTACCAACTTGCCCGA	ref_556_fdr	77	54	83	74	73	59	65	62	86	60
CGACGTGGTCTGCCTT	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
CGGCATAAACCAAAGC	ref_556_fdr	15	23	24	17	36	27	27	33	24	25
TTATATCGGGTATCTG	ref_556_fdr	13	10	15	21	21	11	19	14	14	6
TTGTGTCTAACTTCCT	ref_556_fdr	52	67	46	31	39	48	71	36	41	44
GCGTCGGGAATTCAGC	ref_556_fdr	76	93	98	89	98	82	102	82	102	80
GTAAAATCTCGTCACT	ref_556_fdr	21	14	23	18	18	19	9	10	17	16
TTCATAAGCCACTTTG	ref_556_fdr	13	8	13	3	8	9	8	6	7	9
TTTCGATGTAGAACCA	ref_556_fdr	133	138	125	127	108	104	139	117	124	95
TACGTAGCTGCAGGTC	ref_556_fdr	43	42	44	48	38	37	37	46	63	29
ACCTACCTCGGCTTCC	ref_556_fdr	2	16	6	11	15	5	20	4	15	1
CTATTTGTTGACATGC	ref_556_fdr	20	13	29	20	29	22	31	22	31	21
GTGCCGCAGCCTGATC	ref_556_fdr	0	0	0	0	0	0	0	0	0	0
TAAGGGATGAGTATAA	ref_556_fdr	39	54	38	28	40	37	53	27	53	26
ACGGAAGTCTAGTTAG	ref_556_fdr	189	185	195	163	225	169	178	175	209	163
GGAGCTAGCTCAAGTT	ref_5855_new	2	4	3	6	2	1	1	4	6	3
GCCATCGTACCCATCA	ref_5855_new	2	23	2	6	16	5	9	7	14	4
GCGCGAAAAAACACGC	ref_5855_new	0	0	0	0	0	0	0	0	0	0
TCTTGGTTGCTCCATT	ref_5855_new	0	0	0	0	0	0	0	0	0	0
GTAATATGGGTCGACG	ref_5855_new	0	0	0	0	0	0	0	0	0	0
ACCATAACTCTCCTGT	ref_5855_new	0	0	0	0	0	0	0	0	0	0
TGCGCCTAGCATTACC	ref_5855_new	5	8	10	4	6	4	6	7	4	5
GCAGGGGCTAGGAAAG	alt_5855_new	29	48	44	36	76	40	78	34	70	32
TGCGCGTAACACCATT	ref_5855_new	2	3	2	2	1	3	2	0	2	0
AATTAGCAGCAATCCC	ref_5855_new	12	11	5	8	8	4	15	3	10	5
CACGGTTTATACTTTT	ref_5855_new	3	6	5	3	14	6	7	3	9	5
GAGTCATGGCCGCTTA	ref_5855_new	0	0	0	0	0	0	0	0	0	0
ATTGCTCTTGTATGTC	ref_5855_new	13	30	33	23	36	23	27	26	17	20
TCCCACATTCCAGGGC	ref_5855_new	0	0	0	0	0	0	0	0	0	0
TGATTCCGAGTATCAA	ref_5855_new	19	27	23	19	23	17	29	21	27	22
CATCGTATCTTGTTGA	ref_5855_new	49	58	38	34	80	51	62	41	73	49
CAAGCTTGGGGACATC	ref_5855_new	0	0	0	0	0	0	0	0	0	0
CCCTTTCTGCATGTCG	ref_5855_new	55	69	65	42	85	40	76	43	85	46
GGTCCCGATAGAGTAT	ref_5855_new	0	0	0	0	0	0	0	0	0	0
ATTCATCCGTAAGCTC	ref_5855_new	18	21	28	26	25	21	23	22	28	27
CGAGGTCATTCTCGCC	ref_5855_new	0	0	0	0	0	0	0	0	0	0
TCCGTGACCTGCATGG	alt_5855_new	92	110	119	85	132	84	125	80	157	78
ATGGCTTGGCACCAGC	ref_5855_new	7	13	13	7	22	8	12	9	10	13
CACCGTCTAGGGTCGC	ref_5855_new	19	30	19	15	41	20	43	18	31	21
TCACTTCTCTGGTCGT	ref_5855_new	0	0	0	0	0	0	0	0	0	0
ACACGTAGGGTGACTA	ref_5855_new	12	14	5	9	16	5	10	2	15	9
CGGTTCGGTTAACCTT	ref_5855_new	7	11	3	4	16	3	24	6	22	4
CTAGAGGACTGCCGGC	ref_5855_new	4	15	19	11	12	8	15	13	34	18
TTTAGAGGACAAGCGC	ref_5855_new	0	0	0	0	0	0	0	0	0	0
ATAAGGTGTTGTTATG	ref_5855_new	32	70	52	38	66	25	52	20	78	39
TCGGCATTTGGGATGC	ref_5855_new	0	0	0	0	0	0	0	0	0	0
ATCTTGCTCGCATCGC	ref_5855_new	20	36	44	30	45	23	50	37	39	32
AGTCATCAAAATCAAT	ref_5855_new	5	3	4	3	3	2	3	1	6	3
TTCTTACGAGAGCCTA	ref_5855_new	38	59	42	29	49	41	55	35	41	35
CATGGGGACAGTCTAA	ref_5855_new	7	14	8	5	13	5	18	8	13	8
TCCCCTCCCACGCTTC	ref_5855_new	9	13	11	8	12	8	10	3	7	7
GCGGGCTTGTCGGACA	ref_5855_new	21	33	30	23	38	18	31	14	30	27
GGCGATGCGATAGTAC	ref_5855_new	10	7	7	11	6	3	10	2	7	10
GATGTAACCTGGGTTG	ref_5855_new	0	0	0	0	0	0	0	0	0	0
ATCAGCTATAAGCTAT	ref_5855_new	32	31	21	32	38	13	35	33	42	22
ATTGCGAGGTGAATAC	ref_5855_new	8	13	13	16	13	9	17	12	16	10
GTAATATTTCCGGAAA	ref_5855_new	0	0	0	0	0	0	0	0	0	0
AGTTTATCGACACGCC	ref_5855_new	36	50	45	31	46	33	50	13	62	29
GAGAGTGGTGCGTTTT	ref_5855_new	1	4	1	2	3	5	5	0	5	1
CAGATTTGTCCTTGAT	ref_5855_new	8	10	1	1	7	8	4	5	7	4
TTGGTGGGTGGCAGTT	ref_5855_new	0	0	0	0	0	0	0	0	0	0
TGTAGTCCATCGGTCT	ref_5671_new	87	30	77	78	44	87	34	71	39	64
CATCTGTGTCCATTGT	ref_5671_new	0	0	0	0	0	0	0	0	0	0
CTTCACTTACGCACTC	ref_5671_new	81	30	112	88	27	88	28	65	43	68
GTATTAGTACCTTGGG	ref_5671_new	31	26	46	42	15	30	15	41	10	29
ATCCCCCCCCCGACTG	ref_5671_new	0	0	0	0	0	0	0	0	0	0
TGATCATCTCAGTAGA	ref_5671_new	53	26	51	46	23	59	26	63	14	46
CAAATTATCGTAACCG	ref_5671_new	30	5	28	32	9	35	17	27	5	34
GTCACCACGTTTTACT	ref_5671_new	95	69	126	122	64	95	59	105	46	96
CGGGGACCATTCCGGC	ref_5671_new	151	53	140	115	51	127	62	110	60	114
CGTTGGGTGTCTGTTA	ref_5671_new	0	0	0	0	0	0	0	0	0	0
TTCCGCAGTCCGTATC	ref_5671_new	0	0	0	0	0	0	0	0	0	0
AGCTGCCTTTTTCGAT	ref_5671_new	206	98	269	252	98	231	120	222	94	196
AGGTTTTCTCGAGCTG	ref_5671_new	94	49	125	109	44	93	32	116	61	72
CTTGCGCTCTCTCGGG	ref_5671_new	19	10	31	10	9	16	6	13	9	16
TGTGACGTTAAGCTCG	ref_5671_new	44	14	46	32	13	30	20	38	13	19
TGGTTTCCATAATCCC	ref_5671_new	147	68	201	163	75	149	72	166	92	127
TTTGGTTCGTTCGCCG	ref_5671_new	39	24	55	32	18	44	17	38	25	36
GCCTGGTCAAGCTTGC	ref_5671_new	0	0	0	0	0	0	0	0	0	0
GTTGAATGTCAGTTCT	ref_5671_new	0	0	0	0	0	0	0	0	0	0
CTATGTCACTAACTTG	ref_5671_new	0	0	0	0	0	0	0	0	0	0
CCTACCTTGGCCTTGT	ref_5671_new	0	0	0	0	0	0	0	0	0	0
CGTGCTACTACCACCC	ref_5671_new	312	124	398	331	142	278	114	339	152	269
GTGTCTGAGTCTACAA	ref_5671_new	107	74	147	82	59	94	64	89	45	77
CTTTAGCGCAGTTGCA	ref_5671_new	0	0	0	0	0	0	0	0	0	0
AGATAGCGCCTGGTTG	ref_5671_new	194	105	254	221	74	217	91	216	88	185
CCTTTATGACAGCAGC	ref_5671_new	0	0	0	0	0	0	0	0	0	0
ATTCAGTACTTGATCG	ref_5671_new	21	8	30	20	19	31	12	35	15	22
ACTGGGAAAGGCTATT	ref_5671_new	0	0	0	0	0	0	0	0	0	0
CGAGCACAAATAAGTC	ref_5671_new	0	0	0	0	0	0	0	0	0	0
GCTTAATGTGTTACGT	ref_5671_new	189	88	240	200	80	179	116	198	102	177
AGTACCTGAACAACAG	ref_5671_new	54	23	75	53	27	57	26	63	26	52
GCACGAGTCCAGTGCG	ref_5671_new	46	9	40	32	23	42	13	21	22	32
GCCAATTAATTGTCTA	ref_3664_missing	13	12	14	9	14	3	12	6	22	8
TGCACGTACGTGGTTT	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
TGTCGTATCCGGCTAC	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
CGATTCTGTTCGTACG	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
TGTTCCTTGGCTCCGT	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
TTAAGATTTCCGCGAA	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
CCCCTTGCTTCGTATT	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
ATGTTTCTTTTTGCAC	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
ATACAAGTTACTTGTC	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
TAAAGTCCCAGCTTGG	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
CCTTGCTGCCATTCAT	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
TGTCTGTTTTCTTGTG	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
GGTCGCTGCTTATTTT	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
GGCGATTACTAATAGA	ref_3664_missing	0	0	0	0	0	0	0	0	0	0
ACGGAGTATTGTGAGC	ref_5697_new	0	0	0	0	0	0	0	0	0	0
TTATAATGACTGGGAA	ref_5697_new	37	50	39	45	53	31	67	28	45	27
GATACCGTCGCCATCT	ref_5697_new	0	0	0	0	0	0	0	0	0	0
CGTCTTTAGCTGGCGT	ref_5697_new	16	23	20	26	23	18	23	17	20	15
AACACTTGATATTCTT	ref_5697_new	77	82	83	58	92	55	86	73	72	51
GTAACAAGTTCTAGTC	ref_5697_new	34	79	50	41	76	40	73	36	90	55
GTTCTTACGCAATGTT	ref_5697_new	100	135	105	110	131	109	131	84	141	101
TGGCATCTGAACTGCG	ref_5697_new	57	95	63	75	117	67	109	52	105	64
AGCTTCTCTAAGGTGT	ref_5697_new	14	25	18	13	22	17	22	23	24	14
AGAGAGTGCAACTGCC	ref_5697_new	66	82	74	62	100	50	82	48	81	43
GTGGGTCTTGTCCTGG	ref_5697_new	35	58	36	31	50	25	56	31	72	22
CGGCCTTCCTGTTTAT	ref_5697_new	58	75	59	51	95	59	91	51	85	45
CATCGGTGCACATCCC	ref_5697_new	8	28	9	5	23	6	23	10	36	10
ACATCCACGCGAGCAG	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GTCGCTTCTAAGAACA	ref_5697_new	0	0	0	0	0	0	0	0	0	0
TAAGGCTATATTCGGG	ref_5697_new	0	0	0	0	0	0	0	0	0	0
CCGGTTGAGATTCGTT	ref_5697_new	45	175	89	82	167	53	205	59	174	66
CGTGGTTGTGGTGATT	ref_5697_new	27	46	22	23	39	26	37	19	40	25
GTCGGTCTTTACCGTT	ref_5697_new	0	0	0	0	0	0	0	0	0	0
ATGTTATCTTACTGCA	ref_5697_new	12	26	14	15	30	21	27	19	27	15
GCTATACATTGGGGCC	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GGACGTGGACACTGCA	ref_5697_new	24	36	28	19	45	24	41	23	57	21
AGTCTAGTCCAAACTG	ref_5697_new	22	30	16	20	35	9	32	15	28	17
CTCCACACCAATCCTT	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GTCAACATTTTCGACT	ref_5697_new	9	7	3	7	9	2	3	6	7	4
CACTGTGAAGAGGGAC	ref_5697_new	35	89	67	55	76	55	71	44	98	55
TGTGCCCCAGCTCCGG	ref_5697_new	48	45	50	36	47	31	46	41	47	37
GAGTTACTGGCTTTAC	ref_5697_new	9	11	5	2	8	5	13	7	13	3
TTTCTTGGTTCTTTTG	ref_5697_new	21	31	21	34	35	26	33	29	41	23
CCATCTGCTCGTTGAG	ref_5697_new	69	100	76	62	92	62	87	49	102	68
CAAATTTATCGTTCAC	ref_5697_new	35	44	43	40	36	21	49	43	54	31
ACGTAAGGCCCCGGGG	ref_5697_new	30	38	34	18	33	17	23	21	37	24
CTTACGCAGTTGTTCT	ref_5697_new	132	173	140	114	177	132	200	109	194	114
TGAAATATCTAACTCG	ref_5697_new	180	272	223	172	266	180	335	184	271	143
ATGCATAAGTAATTGT	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GAGCGGTTGAGTATTT	ref_5697_new	22	50	32	30	23	23	31	17	41	29
ACCATACTTTAAATCA	ref_5697_new	11	19	15	12	13	10	35	16	24	8
GGTGTGTTACCCACTG	ref_5697_new	0	0	0	0	0	0	0	0	0	0
CCATTGTCACTTCTCG	ref_5697_new	20	69	22	30	58	19	50	32	53	26
TGGGAATTTTCTTAGC	ref_5697_new	20	18	17	25	21	21	30	19	33	10
GCAAGGTAATTAAAGT	ref_5697_new	47	56	51	47	88	49	74	45	82	49
TGTTGTTCGGGTTAGG	ref_5697_new	35	56	44	34	64	27	54	28	55	41
TAACTATTTTTTCCGT	ref_5697_new	26	27	29	32	21	28	22	16	32	24
CAGCCACGGTATGGCC	ref_5697_new	12	26	18	22	21	9	28	4	31	13
GGCAGGGTATGGAGCC	ref_5697_new	16	19	31	23	27	11	23	6	27	15
TAACTCACGATATAGA	ref_5697_new	0	0	0	0	0	0	0	0	0	0
TCTTTCCGGGAGCGGC	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GTTCATAGCCTCAGTT	ref_5697_new	84	186	123	123	230	99	238	99	204	90
TCGTCCCCCACCTCGT	ref_5697_new	77	126	95	60	95	66	125	63	129	53
TTCTAATGTCTCATCT	ref_5697_new	6	6	5	6	9	9	11	7	6	2
TAGGTCTGCTCATCAT	ref_5697_new	0	0	0	0	0	0	0	0	0	0
TCGCCGAGTTTTGAGA	ref_5697_new	40	46	54	37	51	33	70	31	75	41
GCACCAAATCTAGGTC	ref_5697_new	0	0	0	0	0	0	0	0	0	0
CATGAGATGACATGTG	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GACTGTTTCTCGCCTC	ref_5697_new	8	14	13	9	8	11	11	11	15	10
TGTAGCGTAACGTCTC	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GTCGAAGATAATACTT	ref_5697_new	0	0	0	0	0	0	0	0	0	0
AAGCGTTTCTCGTGCT	ref_5697_new	26	30	42	27	36	40	29	22	41	20
ACGCTGCTGCTCGGAG	ref_5697_new	0	0	0	0	0	0	0	0	0	0
GATCTAAGTAACACGT	ref_5697_new	0	0	0	0	0	0	0	0	0	0
ACAGCGTTTAGTAAAG	ref_5697_new	43	54	41	58	78	25	81	33	78	23
AGTGAGAGCCGAATCA	ref_5697_new	12	23	30	21	35	17	28	14	23	16
CCAAGTGCGTGTCCTC	ref_5697_new	47	63	65	47	56	38	68	57	92	58
TCTTTCTCCATCAGTG	ref_5697_new	21	43	26	22	37	19	58	18	42	14
CACTACAACAGCTAAC	ref_5697_new	2	14	5	4	10	0	8	4	9	7
CGCTGGCGTGTTATTC	ref_5697_new	22	17	27	14	14	17	29	19	24	18
TTTGTCACGGAGATTA	ref_5697_new	26	51	31	30	39	31	49	18	32	24
AGCCGTTCTTCGACTA	ref_5697_new	3	14	15	5	12	12	14	10	20	2
TATTTCCTCGCAAACG	ref_5697_new	33	36	39	41	38	24	50	26	51	37
AGTGTCTCTTCACCGA	ref_5697_new	7	12	17	5	19	13	21	4	22	13
CGTCTTATGTATTGAT	ref_5697_new	231	277	273	225	277	240	269	207	284	230
CCCATTGCGAATGGCT	ref_5697_new	60	82	72	60	109	64	98	57	80	62
GTGTTCATGTTCGAGA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TTCCCGCGCAGTATGG	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
AAAACACCGATGGAAC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TGAGGTATATGCGGCG	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TACTGCGGCTCTAATT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TTCTCGGCATCCAGTT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TCTTACTCATATGGCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CCGAGTATTGTATGGA	alt_4354_missing	1	2	0	1	1	0	3	1	3	1
GTAATGGGTACTGTGT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TTACCACTACCCGTAT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
AGTTGGCGTATGATTC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TCATTTCGTACTGCAG	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CGAATACCGTCTGGCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
GCCTTGGGATGTTGAT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
ACCTCCCTTTAGGCGC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CATAGTCCCCCACTTG	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CACCGTCATTCATGTG	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
GTTATTCGGCGGAATA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
AGTGGATACCACACTA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CTTTGTGTCGTACGCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CCCATGTCACCTCGTT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TGCTACAACCTCTTAT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TCAACCGGTCGGCATC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
ACTTCCCACAGTATTT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CCACTGATCAGAGTAC	alt_4354_missing	6	23	10	13	23	11	21	9	19	7
GCCTTGCCCTGCAGAT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CCAAGTTAGTTCTCCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
GGGCACCAGGGCTCCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TCAAGGGGCGGTTATG	alt_4354_missing	2	7	5	3	6	5	4	2	5	3
TGACCCGCTGAGGGTT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
GTAAACCAGGTCATGT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TTGATATGTTCTCAAC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CGGCCTCGGTTTATAG	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
AGGACCAGTTGCCCGT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CTGGATGCGGTTCGAT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CAAACGCGGACCTCTC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
AACACAACTTCCCAGT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
ACTCAGGTCATTAAGC	alt_4354_missing	7	10	5	3	13	2	14	3	7	5
ATTCTATCCTCTCGTC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CGGGTCGTTGACTGTT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TGGATCCCTTTCATAA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TGTCATGGATCCCTGT	alt_4354_missing	4	4	4	9	0	3	6	2	2	4
CATTGGGTTAGGTGGC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CACAAATATAAGTGTA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CGTCTTGGTTTGGTCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TCCCCAAACGATCCTT	alt_4354_missing	6	3	3	5	16	5	12	6	18	4
TTGCTTGTGATTGGTT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CGTCGGGCTCGTTTAA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TATTCTAAATTAAGTA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
CAATTACCGTCTTCCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TAAGATACTTATTAGA	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
GCCTTTCTCTGATTGA	alt_4354_missing	13	22	13	11	34	14	21	13	30	14
GATTTCCTTATCCATT	alt_4354_missing	3	13	10	2	14	6	7	6	22	6
AGATCCTCTTGTCTGT	alt_4354_missing	4	3	3	1	5	1	0	0	5	3
CGGTCCCTTCGGAAAC	alt_4354_missing	4	6	3	1	5	3	5	1	6	4
TCTTGCCAACAGGGCT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
GCGACCCGCACGGGCG	alt_4354_missing	12	14	6	21	26	13	16	12	17	6
TAGGCCATCCACGGCG	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TAGCGCTTAGGTGTTT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
GCTTACTTTCCAGAAT	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
AGGATAACATAAGTGC	alt_4354_missing	0	0	0	0	0	0	0	0	0	0
TGGTCACACGCTCCTC	alt_5710_new	5	4	7	6	10	7	4	3	13	5
TATCTAATGAGACCAA	alt_5710_new	8	14	3	4	5	7	18	10	14	4
GGCTTCGCGGGGCCTT	alt_5710_new	1	2	8	3	9	4	3	1	6	2
TCAAAACGTTCGCACT	alt_5710_new	9	9	11	9	8	4	4	11	16	5
CTGGTGGAACAGGCAC	alt_5710_new	0	0	0	0	0	0	0	0	0	0
GTCCCAATTTAATACC	alt_5710_new	9	15	7	7	7	4	12	10	13	6
TGTAGCTGCGATGGCT	alt_5710_new	0	0	0	0	0	0	0	0	0	0
ACCTTTAAGCGTAGCA	alt_5710_new	33	28	32	25	20	30	42	20	37	17
CCTCGTACGGAGGTTA	alt_5710_new	13	25	12	14	13	9	20	8	19	8
CCGCCAGAGAGATGAT	alt_5710_new	4	8	7	6	16	9	7	6	3	7
TTTAGTAAATACACAG	alt_5710_new	6	10	5	7	4	15	17	5	12	5
AAATAAAATTGCATGC	alt_5710_new	17	12	18	8	19	11	16	10	7	11
CTTCTGTAGCTCCCGG	alt_5710_new	5	4	9	5	15	2	7	6	9	10
AGCGTAACGATTCGCC	alt_5710_new	12	11	9	15	10	6	15	4	17	11
ATATTGGCCCCGAGTA	alt_5710_new	2	6	4	5	7	8	12	12	12	4
GTTAAATGTATGCGGG	alt_5710_new	0	0	0	0	0	0	0	0	0	0
CTTGCATGAATTTGTC	alt_5710_new	0	0	0	0	0	0	0	0	0	0
ACACAGCAGGCCTGCA	alt_5710_new	18	27	32	15	27	20	23	20	51	15
TTTCTCCGGTTGTGTG	alt_5710_new	0	0	0	0	0	0	0	0	0	0
AGCCTTGGTTGCTCAT	alt_5710_new	11	18	7	6	11	6	15	7	12	5
TATTTTATGTCATTCC	alt_5710_new	17	20	16	18	29	21	30	13	18	11
TTTCCGGCGGACTGTA	alt_5710_new	9	33	23	11	24	18	27	21	28	12
TGGGTCACTTAGAACA	alt_5710_new	1	3	4	3	11	5	11	0	9	4
TTGCCTGTGAGACATT	alt_5710_new	6	12	11	15	14	7	9	7	21	7
CGGTCAACACAAAAAG	alt_5710_new	0	3	1	1	1	0	0	0	1	0
TAGTTGCCCGTGGTGG	alt_5710_new	0	0	0	0	0	0	0	0	0	0
TCTAAGGTTTTATCAT	alt_5710_new	0	0	0	0	0	0	0	0	0	0
TATTACGGTCTACCCG	alt_5710_new	20	22	18	10	33	11	32	10	24	14
TTGATCTTTCCGTGCC	alt_5710_new	0	0	0	0	0	0	0	0	0	0
ACATAAACCTCATATC	alt_5710_new	43	51	45	31	42	33	58	43	48	41
GTGTTACAGCAAAGGC	alt_5710_new	59	68	68	39	60	39	62	56	78	35
GTTCGCAGTGTACACT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCAAAATCTGCACTAA	ref_5802_new	4	6	0	0	2	3	3	0	2	6
TGCTCGTCTATCGTCA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TGTTGGGTATTCGGGC	ref_5802_new	5	10	11	4	15	6	10	6	10	8
CACGCATTGCTCTGAG	ref_5802_new	24	45	29	27	61	31	66	23	37	16
GACATGTGGTCCGCAG	ref_5802_new	33	33	36	40	36	23	44	25	50	28
CAAATCTGGCTTTTCG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GTCAGCCCTCGTCAAT	ref_5802_new	3	8	2	4	6	2	4	3	12	4
CTTTGGTTTCCTTTAC	ref_5802_new	2	5	5	5	3	5	12	4	6	2
CACTGCGTTCTCGAGT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCATACACGAAGGGAC	ref_5802_new	7	21	8	5	14	11	17	14	12	8
GGTTTGGGTATGAAAG	ref_5802_new	8	24	15	16	15	14	15	24	15	9
ACACAGAAGAGATTTT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ATCTGAATATGTCGTT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
AGCGTATCATGAGGTA	ref_5802_new	9	10	7	10	4	6	6	9	12	4
TAGATGGACCCTATCA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
AACGCTTCTTGACGCT	ref_5802_new	4	1	3	1	7	1	1	5	4	2
ATCCACACTTGTAGCT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ATTTGCTACGTAGGGC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCTGTTGAGACCACAC	ref_5802_new	7	11	14	3	5	2	10	6	9	2
CGCCTTCGATGTTTGG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TTATCCGTCCCCGGAT	ref_5802_new	3	4	4	4	8	3	2	5	5	1
CGTCACTTGGTCGAAT	ref_5802_new	0	0	0	0	2	2	0	0	1	1
TTGTCATATGTGCTCA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CGCGTACTGATCGGTG	ref_5802_new	4	11	7	6	11	7	6	11	4	2
AGTTCCACGGTCTATG	ref_5802_new	6	18	15	13	25	11	29	15	13	20
ATGCTGTCGACCTCCT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TTCCTTACGATAATTC	ref_5802_new	3	9	3	8	6	5	7	2	5	8
CATGTCGCCCTTCCAG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GACTTCAAGTAAATTC	ref_5802_new	26	41	41	27	37	31	33	30	48	26
AGCCGTGCATTTTTCG	ref_5802_new	25	21	33	22	44	24	53	19	36	20
CCTTTTATAGGGATGT	ref_5802_new	6	3	7	2	11	1	6	3	15	2
ACAGCGGTGAATGGTC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TAAGGTATCCATAGCG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GTTAATCCTCCCAGTA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GGTTCCACGTAGAATT	ref_5802_new	2	0	1	0	0	0	2	0	0	1
TTTAGCATGCGTTCAT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CCATGATTTTTACTAG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ATCTATCGGGAGTATA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GTTAAGCGTTACTTCG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TGGCTATTCTTCAATA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GACAGTGTGTTTCCCG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GGCTGCCCGTAAGCGT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TTAGGTTAGCTGGTTG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TTCACGTTAAGTACTT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCTCAGTCCGCGAACA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CATAAACATTCAGGAA	ref_5802_new	16	23	19	25	17	26	22	19	26	21
CGGGGACACGTTTAGT	ref_5802_new	13	17	20	18	22	22	15	19	20	13
TATATTAACCAACTCG	ref_5802_new	4	8	7	4	8	6	10	8	3	6
CCGATACAGCTTTGCA	ref_5802_new	2	3	5	1	1	0	3	1	4	1
TGGGGAAACCCTTGTT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GGTCTCATCGTTCCTA	ref_5802_new	3	3	3	8	21	5	10	6	7	1
TACTTCCGTTTATGTT	ref_5802_new	5	8	9	7	9	4	4	6	7	4
CGACCCACTTGACCCG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
AAGTTGCATGACATTC	ref_5802_new	0	1	1	3	0	0	1	1	3	1
GGATTAACCACTTGCT	ref_5802_new	1	0	0	0	0	0	0	0	1	0
CTGTGGCTTTCTGGAG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCTCACGCGGTCTGAT	ref_5802_new	22	40	25	18	30	27	33	22	27	13
ATGATCGATCGAGTGT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CAGGGTCTGAGGACAG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CGGCCTTGTTTTTGCT	ref_5802_new	2	5	9	8	2	5	7	5	2	4
CTGTATTGACTGTTAC	ref_5802_new	6	0	1	1	2	1	0	2	2	0
TTGTTGTCGCCCTAGT	ref_5802_new	29	13	12	23	24	15	24	15	28	23
AAAATAACACGAAATC	ref_5802_new	4	3	5	1	9	2	10	5	0	7
ATCCTGCGTAATGGGG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TCGTTTTCAGGCCATT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CCCACGGCGATTTAGT	ref_5802_new	19	22	15	23	30	11	30	21	22	13
CCCAAGATCTCTATGC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CCAAGAGTGCTTCTAT	ref_5802_new	3	4	2	2	4	2	3	3	4	5
ATGGCTTACACTCGCT	ref_5802_new	7	30	25	6	27	6	33	10	26	12
TTGCAGCGTCGTCATG	ref_5802_new	2	1	1	2	3	1	0	3	4	2
GGCCAGAAGATACGCA	ref_5802_new	0	1	1	3	0	0	1	0	3	0
GTTATGGCTACATCCG	ref_5802_new	5	7	3	5	9	6	8	5	7	6
GGGGTAGTCGCCCTCC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
AAAACAACTCTGTTGC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ACAGGCTTTTAGCTCA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GTTGTAATGTAGTGGG	ref_5802_new	12	9	12	12	17	9	23	12	14	8
TGATGTGTCCTCGCGC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCCCGCCGTGTAGTTC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GTTAGTTGTCCTTACC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ACTCAGTATTAGGGAC	ref_5802_new	11	15	8	15	21	6	18	9	14	18
TTCTGGGTAAACCACG	ref_5802_new	5	9	7	7	5	3	9	6	16	3
CGAGAATAGACGCATT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CTGTTCCCAGCCACGA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GAACGGTTTTCCTACG	ref_5802_new	3	6	10	7	13	7	8	5	19	8
TTGGAACAAGAATGTT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CGCTCTGCACTGCAAA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TGCATCACCCTTCTTA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CTTCATCTCCGCGCAA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GGGGTGCACCCGTTCG	ref_5802_new	9	18	8	11	17	8	17	18	7	13
CCATGTCCCACTCGTC	ref_5802_new	4	7	2	2	4	1	3	2	3	5
TTCTGTTAGGCCATGG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCGATATTGTGTTGAG	ref_5802_new	0	4	6	6	2	2	8	2	8	2
CTCAGCAAATTGTCCT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CGGTTCTTATGCCTAT	ref_5802_new	4	37	6	12	39	3	21	0	40	5
TAGACTGTATCTTGGT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TTCTTCCTATTTTCCT	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ACCACAGCCGTAGATA	ref_5802_new	8	7	10	5	19	6	17	8	9	2
GCACTTCAATATAATA	ref_5802_new	8	9	13	11	18	11	9	12	11	5
ACGAGTTCAATTTGAA	ref_5802_new	0	0	0	4	2	0	2	1	0	0
CCCTTGCGCGAACCAA	ref_5802_new	1	0	0	0	2	0	0	0	2	0
TGGTTCCGATACCTTC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TGCTGGACGTCCTTCT	ref_5802_new	6	13	1	7	2	4	8	6	8	1
ACTACTTTGACTGTTT	ref_5802_new	7	6	10	3	5	6	5	10	12	6
TAAAGGTCGAGATTCG	ref_5802_new	39	27	49	44	22	46	27	53	26	40
CGCTGGTGCAGGGATC	ref_5802_new	0	1	0	0	2	0	1	0	0	0
ATGCTGATAAGGTGTG	ref_5802_new	6	8	3	4	5	2	10	1	6	6
CATTGCCTCAATCCAG	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CCCTTTTTCTTTTCTC	ref_5802_new	0	0	0	0	0	0	0	0	0	0
ACCATAATAATTCATG	ref_5802_new	25	29	38	37	39	26	52	26	34	40
TTACAACCCGTGTTTT	ref_5802_new	12	17	19	15	11	8	22	12	26	18
TAACTTGAACGCTTTA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
TTGAAACGTTAATTAA	ref_5802_new	24	17	20	15	20	11	30	13	17	16
CGCGCTGACTAAGCAA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
GCAGTTGGGCAAGCCA	ref_5802_new	0	0	0	0	0	0	0	0	0	0
CAACGACGCTTAGTCC	ref_5802_new	41	55	58	43	34	42	54	35	52	42
TTCCTGACTCTCCGGT	alt_3319_missing	14	33	17	8	26	11	27	15	40	16
GCCACGCCGCCAGGTA	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
TCCAGTATCAGAAGCT	alt_3319_missing	22	82	37	38	64	30	46	23	42	37
GTTTTATCTGTCGAGT	alt_3319_missing	9	14	17	7	14	8	17	12	11	9
GGAGCGAATTGGGCGA	alt_3319_missing	7	14	6	4	8	7	7	3	9	8
CCGTGCGACGCCTACG	alt_3319_missing	8	17	6	6	12	4	17	8	14	5
ACGTTCATGGTTTTTT	alt_3319_missing	53	76	49	53	73	53	78	38	76	34
GGCGGTCAGCTAGTTC	alt_3319_missing	18	29	12	7	13	11	24	8	28	11
CCTCAGTTCTTAAACC	alt_3319_missing	6	18	6	2	14	5	21	2	15	8
CTAGCGGAGCAATGGA	alt_3319_missing	20	49	28	24	54	24	50	13	50	19
ACTCTTTTGGAGCTTC	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
TTGCTGGCTTCTTTAA	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
GGGTTTTTTGCCCATA	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
CGAAGCGGTCCCGTTT	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
GATATTTGTATTCCGC	alt_3319_missing	5	8	10	8	9	4	11	3	12	9
TTAATATACGATTGTT	alt_3319_missing	9	7	10	2	9	7	7	2	11	4
TACTTTGCGGAGACTC	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
TCCCCCTCGCCTACCC	alt_3319_missing	16	20	20	9	37	16	32	15	24	17
TTGGGATGTTTTACTT	alt_3319_missing	5	6	6	6	10	12	6	3	13	3
CTGGCGGTGTATCTTA	alt_3319_missing	38	66	41	39	80	27	57	24	69	35
TACAGTCCTGCGCCCC	alt_3319_missing	6	23	6	6	17	5	15	12	25	3
TGTTCATTGGTGTCCG	alt_3319_missing	16	24	15	12	17	11	20	8	18	4
ATTATTGGGATCATAC	alt_3319_missing	40	102	54	60	59	26	81	29	70	39
GGCTTTGAAGACCTTA	alt_3319_missing	0	4	0	0	4	0	1	0	1	0
GGTTCCCTGCCCTTCC	alt_3319_missing	3	5	9	4	5	7	11	6	7	4
GCTACCCCAACAGCTG	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
GAGGCTTACTGACGCT	alt_3319_missing	0	0	0	0	0	0	0	0	0	0
CGGGGCCGTCCACACA	alt_3319_missing	29	62	51	62	59	53	51	34	54	32
GCCATTCCCCTTTTTA	alt_3319_missing	15	39	16	18	40	13	34	17	38	10
CGGGGACACGTCATAA	alt_3319_missing	5	7	2	6	2	4	8	4	5	4
TTATTTGGCTCTTTCA	ref_2369_missing	28	44	51	35	51	41	44	33	58	27
ACTGTGACCATCGTGG	ref_2369_missing	3	10	7	2	6	3	3	4	1	0
TATAGCTTTATGGTTC	ref_2369_missing	4	4	3	3	7	3	5	5	13	4
GTTTCGTTTCAAACAC	ref_2369_missing	11	13	10	6	4	5	12	13	24	7
GATGGCGCCTCCAGCG	ref_2369_missing	90	94	112	77	89	82	90	76	112	94
ACTTATACTTTTATTG	ref_2369_missing	15	34	28	20	35	18	33	26	41	19
TGCTCACAACATTGAC	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
CATTCACAATCTTCCA	ref_2369_missing	52	47	57	41	47	38	72	28	56	41
TTTTGGTTCCGGGTCT	ref_2369_missing	37	27	28	22	24	25	41	16	26	21
ACGTCTCCTATTCATC	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
AAGGCGTGTGCTGAAG	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
TATGTGATGGAAGGCT	ref_2369_missing	7	14	8	5	17	6	9	4	10	9
GATGTTCCGCATATCT	ref_2369_missing	48	63	70	70	55	46	64	45	74	53
GCTGAGGGTTACCAAT	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
GCCGCATGGTGGCGGT	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
CTATTCACAGCACCGC	ref_2369_missing	13	12	12	6	11	11	13	9	9	4
TTGTCTTCGGCAGCCC	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
ACGTAAACCCGATACA	ref_2369_missing	101	117	123	86	116	102	154	87	154	100
CCTAAAGTTAAGTTAA	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
CGACAGAATGGATATC	ref_2369_missing	8	19	14	9	17	6	12	8	12	7
TCTCCATGTTCCGAAG	ref_2369_missing	20	14	18	16	21	19	30	15	18	8
GCGGGATAATCTTCGT	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
AAGAACCATACCTTAC	ref_2369_missing	8	15	11	14	13	5	10	4	12	4
TTGATCTGTTCACCGG	ref_2369_missing	0	0	0	0	0	0	0	0	0	0
TGGGAAGCATTACATC	ref_2369_missing	44	65	64	65	57	59	68	59	73	52
GCCTGTATAAGTTTTG	ref_2369_missing	2	10	12	4	17	12	16	4	25	4
GCGTAATATTTATCGT	ref_2369_missing	42	28	48	40	38	30	41	28	46	37
CCTTCCTCCCTCCGCC	ref_2369_missing	55	64	65	60	68	53	74	55	64	52
TCTCAGTGACTAAATG	ref_2369_missing	6	7	6	4	6	5	7	7	10	5
AAGTCGGAACTTTAGG	ref_2369_missing	7	15	11	3	3	8	12	7	13	3
GGTGCCACCGAAAATT	ref_2369_missing	3	10	4	2	5	1	1	4	6	4
TATGTATGCTACTTCT	ref_2369_missing	7	9	8	6	4	5	11	10	6	8
TTAAGTTCGCCATACT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
TGGGGGAACCCCGGAC	alt_553_negative	71	108	67	75	103	66	109	54	124	53
TATGTCCTTTCGGGGT	alt_553_negative	42	56	45	43	60	42	68	33	62	34
TATAATCAGAGGCACA	alt_553_negative	44	63	55	57	57	54	85	45	80	32
CGCAAGTGCGTTACCA	alt_553_negative	61	113	75	68	106	71	125	61	128	57
ATATACGCAGCTTCTG	alt_553_negative	2	11	6	5	6	8	9	8	5	5
TTTTGTTATATATGCG	alt_553_negative	5	9	3	3	4	4	7	2	8	2
ACTAGCCATCGATGGT	alt_553_negative	5	29	9	5	19	10	33	11	39	10
TTGTTGTTTTTCTATC	alt_553_negative	123	226	149	107	204	110	193	102	234	121
AGTGCATATGATTTGT	alt_553_negative	22	43	21	25	43	21	27	24	36	15
TACACCTAAGCGCATG	alt_553_negative	36	56	36	33	69	46	74	44	67	34
CTTATTGGATCCCCGT	alt_553_negative	0	3	1	3	0	1	4	1	3	2
GCAAATTGTGTTATTA	alt_553_negative	33	44	53	31	49	28	54	21	66	25
ATCGATTAGTCTAACG	alt_553_negative	26	31	28	22	37	23	22	19	39	20
CTCATCAATTGTAACC	alt_553_negative	43	98	46	49	89	48	99	60	87	37
GCCACGCTGCTAATGT	alt_553_negative	12	19	6	3	17	1	14	5	13	8
CTTGGACTGGGAGCTA	alt_553_negative	17	19	18	19	20	15	15	19	34	13
GCACGGGGGGTGCACG	alt_553_negative	30	47	38	30	53	34	40	18	41	28
TTGGGCGTATTAAACG	alt_553_negative	45	74	46	35	57	40	73	39	73	34
GCACCGTTTTGTTGCC	alt_553_negative	0	0	0	0	0	0	0	0	0	0
CTATCAAAGCGTATTC	alt_553_negative	53	56	61	47	87	44	70	33	99	38
TCCCAGTCACGTTCAA	alt_553_negative	1	0	1	4	6	0	2	0	1	0
ATCACGTTGCATGTCA	alt_553_negative	21	48	42	27	57	34	57	24	57	35
CAGGCTGTCTGGTCCC	alt_553_negative	0	0	0	0	0	0	0	0	0	0
GGGCATTAGCATGGTT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
CGTAGCTTAGTTACGA	alt_553_negative	0	0	0	0	0	0	0	0	0	0
TTGGCTCCTTGATGCT	alt_553_negative	17	19	19	18	17	10	15	10	13	6
GGTTTCGTTTCTCAGT	alt_553_negative	67	80	75	50	104	53	90	47	93	54
CCGGGCCCATCTCGTC	alt_553_negative	17	60	15	24	76	12	63	17	83	17
AGCTGCAGACCTTCAT	alt_553_negative	20	17	12	11	19	13	26	22	15	13
CGCCTATGAGTTCGAC	alt_553_negative	0	0	0	0	0	0	0	0	0	0
TTAGACAATTTTTAGC	alt_553_negative	0	0	0	0	0	0	0	0	0	0
GGGAAATGTGATAACC	alt_553_negative	0	0	0	0	0	0	0	0	0	0
GACGACTGGTTCGGTG	alt_553_negative	8	7	5	10	13	5	11	9	9	7
GTCATTAATCTAGTCA	alt_553_negative	0	0	0	0	0	0	0	0	0	0
TCGAGCTGTACCATCC	alt_553_negative	36	49	49	51	72	54	82	46	54	38
GTTTTTGTACATATAT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
CTTTAGTCCCCATTCC	alt_553_negative	9	26	10	17	15	11	29	8	20	11
CAAATTTTACACGTCT	alt_553_negative	23	44	28	35	51	26	55	27	54	30
TAAAATACACGCCGAG	alt_553_negative	0	0	0	0	0	0	0	0	0	0
GTGGATGAGGCAGGAC	alt_553_negative	17	12	16	14	33	11	27	13	26	23
CCACGGGAGACATCGT	alt_553_negative	64	94	68	69	102	61	81	73	118	47
CATAGTCGGACAGGGT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
TACGTCCGAGATGACT	alt_553_negative	94	139	112	81	143	85	132	74	125	71
GCGACTTAGTGACTGT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
CTTTAGTTAGCATTCA	alt_553_negative	29	73	25	28	47	25	62	38	57	38
GTACCCCGTCACGGGT	alt_553_negative	17	37	12	10	34	12	24	7	28	8
CAGGCTGGGCTCGCTG	alt_553_negative	15	43	9	18	24	24	34	23	29	21
TGTTGTGACTCTGTTA	alt_553_negative	0	0	0	0	0	0	0	0	0	0
GCTTGGTTATTCACAA	alt_553_negative	3	29	16	19	15	10	24	16	24	13
ATTTGATGCGAGAGCG	alt_553_negative	43	67	33	33	79	35	72	37	85	33
TCTGTGTTACAACTCC	alt_553_negative	14	26	16	10	33	20	27	11	30	8
ATGCCCCGATGTATGT	alt_553_negative	68	106	101	76	147	69	122	87	144	74
GGTGGCCACAGCTGTT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
CACGGCGTCTGTTGAT	alt_553_negative	12	16	18	6	14	9	16	6	18	7
TCAGTTCTCGCTCACC	alt_553_negative	0	0	0	0	0	0	0	0	0	0
GAGCTTCTTGTTATAT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
GACAATCCGCTTGTTT	alt_553_negative	0	0	0	0	0	0	0	0	0	0
TTCCCGTTGATTTTGA	alt_553_negative	30	26	18	24	33	10	40	23	49	19
TGGCCCCTAATGGGAG	alt_553_negative	93	129	100	97	135	85	130	100	137	63
GAACAGGTGGCCCGAT	alt_553_negative	96	126	117	89	138	79	148	58	140	88
ACACTATTTTGCTGTG	alt_553_negative	42	109	62	67	93	64	103	62	86	66
TTGGGATTATCCCCGC	alt_553_negative	20	30	21	26	41	18	30	9	41	14
GAATCAGGGCTTCTAC	alt_6092_new	101	144	114	110	148	116	135	99	158	98
TGGAGTTTATTATGTA	alt_6092_new	32	37	33	42	50	24	52	27	38	24
GGGGCTTTCCTCACCG	alt_6092_new	55	80	55	57	62	56	96	51	66	36
GGAAACTGTCCATATT	alt_6092_new	3	2	6	2	5	0	8	2	2	4
AACATTCTCTTCGGTA	alt_6092_new	8	15	6	9	11	2	6	13	10	6
CTATTCAGGCCCGTCC	alt_6092_new	78	123	74	57	116	55	114	72	125	52
ATGGTTTTGCCATTCC	alt_6092_new	3	10	6	4	3	6	9	4	2	2
CAGGCAATAATAGTTC	alt_6092_new	0	0	0	0	0	0	0	0	0	0
ATACAAGGAATGGCTT	alt_6092_new	24	33	32	31	30	25	25	21	41	23
GTAGTAGGAGATCGGT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TCTGGTAACAGTGGCA	alt_6092_new	8	9	8	10	13	6	13	3	19	9
GCTCTTTCATTGTCTA	alt_6092_new	0	0	0	0	0	0	0	0	0	0
ACAGTGTACGTTATTT	alt_6092_new	101	112	103	88	139	70	123	59	133	59
ATGTCTGCTTGTGGGG	alt_6092_new	0	0	0	0	0	0	0	0	0	0
AGGCTATGTCAGTATG	alt_6092_new	80	98	94	61	99	80	86	57	112	60
TACGGTCAACCCACTA	alt_6092_new	13	20	19	10	23	7	26	8	38	13
GGCTACGGCGCGCCAG	alt_6092_new	14	9	13	12	15	10	16	6	18	11
TAATAGGCTTGCGTCC	alt_6092_new	16	21	9	9	18	10	13	7	13	9
TGAGAAGTCCGGTAGT	alt_6092_new	60	81	52	47	82	47	82	59	81	45
GCTCCACAGTGAGAAT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CGAATTTGCGGTTGTT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
GTGTCCTACTACTACA	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CCCCAGTATCGTTCGT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TGATTGACTACCTTTG	alt_6092_new	7	11	3	8	11	9	13	6	7	8
GTTCTCCTTAAAATTG	alt_6092_new	4	1	2	0	3	1	4	0	2	2
AATTGCCCCCGTCCGT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TTAATCCAAGGAGATT	alt_6092_new	21	66	46	45	68	25	69	26	59	28
GGCTCGCACTCTGCGC	alt_6092_new	0	0	0	0	0	0	0	0	0	0
AAGCCTCCTTTTGTTG	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TTTGTCGGGCCGCATG	alt_6092_new	23	34	20	24	27	17	36	17	37	10
GCTCTAGAGGAGTCGT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CTAGATTCTGCTTGTT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
ATAGGGGCGCTCTCAG	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CTCCAGAATTCCCTTC	alt_6092_new	6	15	10	7	13	3	10	10	14	8
CTAGAATTCGTATCGG	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TTAGTCGTGCTAGCAA	alt_6092_new	46	63	56	45	66	49	65	58	61	39
GTTGATTGTAGACGGA	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TCTCCTTATGCTCAAA	alt_6092_new	0	0	0	0	0	0	0	0	0	0
AGCTCAAATACTTTCA	alt_6092_new	52	56	62	41	64	39	74	48	65	52
AGGAACCGAAGGCGCA	alt_6092_new	24	17	27	20	24	20	29	25	13	22
ATACCCGCGCGTCTAT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
GTAATCTTAGCTCTGT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CCAGCCCCGGGATGTC	alt_6092_new	0	6	0	0	7	0	2	1	3	0
TTTGCAAGCATCCTAT	alt_6092_new	12	14	8	8	7	13	16	6	15	11
TCTATAACACACTCTA	alt_6092_new	4	24	10	17	43	7	30	9	33	13
ATGGTTGGCTTATGTT	alt_6092_new	45	53	46	35	45	35	63	29	72	30
GTAGGGTAATGCAGTA	alt_6092_new	20	34	40	27	47	33	30	31	45	35
GTTTGCCAGCTCCATA	alt_6092_new	9	14	9	15	15	16	22	13	16	10
CATTCTCATATTATTA	alt_6092_new	24	40	34	19	27	26	35	22	40	30
GTCTCTATCCACTCCA	alt_6092_new	21	59	14	21	61	19	71	22	69	11
GTGATGCTAACTGGTC	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CAAATCCCAGGTTGCA	alt_6092_new	16	24	15	18	21	11	22	14	15	10
GGTTGAGTGAATACTT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CCCGGCGATCCGAAAC	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TACCTGCGGTGTCTGA	alt_6092_new	0	0	0	0	0	0	0	0	0	0
AGAATGTAATCCTTAT	alt_6092_new	16	40	28	34	40	23	29	27	36	21
ACCATTTAATTGTTAC	alt_6092_new	9	14	14	8	10	11	13	14	15	5
GCATTGAGATTATCCA	alt_6092_new	17	20	22	18	12	12	19	16	29	26
CGTCTGTAACCCATCG	alt_6092_new	3	6	5	4	0	7	15	2	7	3
GTCGGTTGCGCCTTTC	alt_6092_new	18	42	20	20	39	14	40	26	36	21
CTCTTGCTATAGGGTT	alt_6092_new	18	53	37	23	26	26	40	22	50	23
GCGGTCCGGGTTTGTA	alt_6092_new	6	3	6	7	7	2	9	11	3	2
TACTTCGTTGTTGTTC	alt_6092_new	33	43	30	33	43	27	49	30	48	30
CGTCCAGTACTCCGTT	alt_6092_new	41	45	67	35	73	31	47	46	77	37
GTACGTTTTAGGCTAC	alt_6092_new	82	110	84	65	129	79	141	68	100	67
TTCATATGTATGCCGC	alt_6092_new	77	129	93	76	115	57	108	68	107	66
CTTATCATGCGGCTGA	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CGTGCCGGACTCGCCT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
ATTTACTATTGTTTAC	alt_6092_new	0	0	0	0	0	0	0	0	0	0
CTTCGCTGATTTTAAA	alt_6092_new	1	2	2	2	0	1	0	3	6	0
GCTATTTATCTCAAAC	alt_6092_new	6	9	6	8	12	7	9	6	11	11
CGCCATTCACTCCTTC	alt_6092_new	13	19	11	12	25	14	26	13	19	13
AACGTGTTATGCTCTT	alt_6092_new	14	21	13	13	21	14	20	14	30	14
GCGGTTCATTATGGGT	alt_6092_new	44	63	61	45	59	35	71	33	79	51
GTACTAAGATCTGATA	alt_6092_new	4	4	0	1	4	2	6	3	13	3
GAAACGCCCATTGCAT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TTGACTTGCCGCTTTT	alt_6092_new	74	88	83	70	108	87	84	78	89	51
TATAAATCACATTACA	alt_6092_new	2	0	0	2	3	0	0	0	3	0
CTACGGTTCGTGGATC	alt_6092_new	7	12	10	8	16	13	18	6	17	4
GCCCCCTTTCGTACAT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TCCTTCGCTTTCTTGG	alt_6092_new	4	13	12	3	12	8	15	3	6	6
TCACGGTACCTGTGTT	alt_6092_new	0	0	0	0	0	0	0	0	0	0
TTTAGTATCAAGCTCC	alt_6092_new	0	0	0	0	0	0	0	0	0	0
AGAACTTTCAAGTCAC	alt_6092_new	8	6	7	3	3	4	5	3	6	5
TCGGCATTCTTCACCT	alt_6092_new	114	149	127	114	156	113	146	105	192	91
ACGAAATACGGGGTTA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
AACTAACTTTAGATAT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TTGCCTCGGGGTACAC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CACCCGTGGCCACTCT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GCAAATAGACTTAAGC	alt_4282_missing	20	31	31	16	12	16	27	15	27	20
TAACAAAATAGTTTTT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GTCCGAGTATATCTGT	alt_4282_missing	25	29	25	18	25	19	48	14	46	15
CTCTATAAACTGGACC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
AAAAAGGTTCCTAGAA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTCTGTGATTGC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TGGCCGAGGCCGAGGG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GGGCGCTTCGATGTTG	alt_4282_missing	8	6	8	6	14	12	8	5	9	6
TTAGATTCGGCATCAG	alt_4282_missing	13	17	14	12	22	13	25	6	14	6
ACCGAGAGGGATTCAT	alt_4282_missing	6	12	6	6	13	7	7	9	13	5
CATCACATACTGCCTC	alt_4282_missing	15	24	13	15	20	9	26	20	22	13
AGATTTCTGTTAGGTA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
ATTACATGGATTTATA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
ACGTTGACTAAGTGAG	alt_4282_missing	17	21	21	19	25	18	28	14	30	18
CGTTAACGTGATCTCC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CTAACCGCAGCGTCCT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GTTGGTTTTGTTATAA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GAGTCCGCGCGTACCG	alt_4282_missing	32	29	35	27	34	29	63	26	43	26
CTCCTTCGGAAGAGAC	alt_4282_missing	20	14	33	24	38	20	35	26	31	14
TGCTTCTTGTTTGATA	alt_4282_missing	13	18	22	16	17	11	24	16	23	7
TGGCGATGAGTAAATA	alt_4282_missing	16	24	17	14	15	18	16	11	22	11
ACGGCAACGTCTGTAT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CCTAATATCGCTAATA	alt_4282_missing	19	35	31	27	36	21	36	22	36	17
CAGATATGGGTCCAAC	alt_4282_missing	60	92	93	61	107	70	122	45	100	67
AGGTGACACAACTGGA	alt_4282_missing	18	28	27	19	17	13	26	14	32	20
GCGCTTACGCGCAGGA	alt_4282_missing	26	61	29	46	59	39	44	36	64	32
TCTGGTACGCTAAAAT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TCTTAGACTCGGTTGT	alt_4282_missing	7	7	10	5	15	2	9	3	11	3
GTCCGACACGATCTCA	alt_4282_missing	19	25	19	7	20	13	14	13	13	11
TCCCATATGGGAGTTT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CCAGGCTTGCTTCCTT	alt_4282_missing	6	22	7	4	27	6	18	3	25	4
TTGTCTCCAGTAATTT	alt_4282_missing	13	25	19	18	19	15	22	12	35	15
ATGAAAATCATGTGCC	alt_4282_missing	0	0	0	0	0	1	0	0	0	0
ACTACGGTACAAGCGC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTTGCGAACTAAAGT	alt_4282_missing	13	11	15	22	18	5	11	11	10	4
GTGCCGAAATTCGAGG	alt_4282_missing	12	40	17	18	23	24	28	23	34	10
TTTTTTCGCGTGAATG	alt_4282_missing	15	23	21	11	22	14	23	12	22	19
AATACCTATAGAGCGA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
AAGTTGCTATTCGGGG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTCGGTGATCTG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
AGTCCCTACTTTCTTT	alt_4282_missing	4	2	5	4	6	1	4	2	13	3
TCTCACTTCTTACGCA	alt_4282_missing	2	4	0	0	5	4	9	3	1	1
TTGCCTCCGCTCCGTC	alt_4282_missing	0	3	1	2	1	1	2	1	0	0
CCCTGATAGGACCTAA	alt_4282_missing	31	39	56	22	35	27	37	30	37	17
CAAAGTTTTAAGAGCC	alt_4282_missing	6	20	12	7	15	8	11	16	18	8
ATTCAACTTTCGCTGA	alt_4282_missing	3	4	0	1	4	1	1	1	3	2
CCGCCTCGTTCATGTC	alt_4282_missing	2	7	7	3	9	12	8	4	6	5
AACTGAGTGTTCTCAT	alt_4282_missing	3	10	7	3	9	5	8	3	9	0
GTTCCTCCTTTTTTGT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CTCGGGGGCGTAACTT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TGCGTGAATGTTAAGG	alt_4282_missing	38	34	49	30	46	27	45	32	36	23
CCAACTCATAGTGGCC	alt_4282_missing	7	9	2	5	8	5	11	9	7	3
TTTTCACGTAGCATCC	alt_4282_missing	8	10	8	6	7	9	11	7	14	12
GTATGGACTCGCTGCT	alt_4282_missing	7	13	10	5	10	6	8	3	5	4
CCTTTTCATACCCGCA	alt_4282_missing	0	0	0	0	0	1	2	0	1	0
CGAAATCGGACGACCG	alt_4282_missing	16	20	24	21	39	13	33	34	41	14
TAGTGTATATGCACCA	alt_4282_missing	14	16	9	14	26	11	14	14	27	7
CGGGAGCTGCACATAG	alt_4282_missing	19	26	22	22	26	23	30	15	25	31
GGACTTTAGGCATACC	alt_4282_missing	36	48	46	41	42	31	51	32	44	32
AGTGACCACGCTTCTT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TATGGGCGTCAAGTTA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CCGGTTGCGCCAGGCG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
ATACTCCGGACCGTAC	alt_4282_missing	3	12	6	10	11	3	5	11	14	5
CCTTAGCCCTGCGTCA	alt_4282_missing	9	9	7	6	8	7	4	4	8	4
GCCCGCTCACTTAATA	alt_4282_missing	4	16	17	5	19	15	18	12	10	9
TAAAGTTTTGGTTTTA	alt_4282_missing	12	21	20	13	26	7	17	11	23	21
CCGTGTCGGAGGCGCT	alt_4282_missing	6	12	15	9	27	6	11	3	17	6
ATCCTTGAATATTAAT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CTACTTTTTCTGTTCT	alt_4282_missing	0	1	0	1	0	0	0	1	0	0
TCCGTGTGCACCCATT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TCACATAGACCCACAT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GCGGCGCTGGACTGCG	alt_4282_missing	5	17	6	2	11	6	26	4	13	6
CCGTTGTAAAATGCGA	alt_4282_missing	2	4	3	9	9	3	12	7	17	5
GCCTCCTAAAGGTTAT	alt_4282_missing	7	14	11	14	13	11	16	2	16	6
GTGGTACGGGTTATGG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TGCCCGACGGTCGGGA	alt_4282_missing	28	28	26	21	32	18	44	33	49	20
AAGGCAGTATTGGTGG	alt_4282_missing	32	36	26	17	49	33	53	20	53	19
GAGGGCCTATTACCCT	alt_4282_missing	20	30	21	19	21	15	25	25	33	20
GTTTGGTCCACAGTAA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TTGGAGTTAATTGCAT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
AATTATTGACAGGTTC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GAAATACACAATTTCA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TTACAGTCCGAGTGCA	alt_4282_missing	80	78	72	41	91	54	89	42	101	56
GTTCTATAGAGTTTGG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TTAGCTGTTAAATTAG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GACATTCGCCGCCATT	alt_4282_missing	5	11	0	6	4	7	3	5	3	5
CCTACAATATAGGTTT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TTTGTTAGCTCACTCG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GGACCACTCAGCCTCT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GTGCGTACCTCACTAA	alt_4282_missing	8	3	6	1	5	3	4	7	4	3
ATAGCTGTACGTCGGA	alt_4282_missing	6	5	3	3	8	4	5	4	1	3
TGTGCGGTACAACTGT	alt_4282_missing	21	47	12	4	42	6	45	7	42	12
GGATGAACGTCGTCTC	alt_4282_missing	0	8	6	2	5	3	3	2	2	1
GTAGGTATCTTAATCC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CTAGGGTCCCGGTCTG	alt_4282_missing	22	34	19	17	22	15	24	16	27	16
TGTGCGTTAATATGAC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
ACTGTTCGTATGCATT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GTGATAACTAAGTCCT	alt_4282_missing	9	14	13	6	12	10	13	6	6	8
CCCCGCATATGTCTCA	alt_4282_missing	1	1	1	1	4	2	1	0	1	0
TTCTTTGCATCGAATA	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GTCGGTATAGCTCATC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CCGCCGGCCAACCGAT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CTTAGTTGGTAATCGC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CAAATTTGCGTTATCG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CAAGGTATTAAGCCAC	alt_4282_missing	7	15	11	13	26	8	18	15	16	9
GCCAACTAAGGTATAG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
GTTGTCTGCATGGTGA	alt_4282_missing	14	22	20	12	16	15	20	13	30	8
CGTTATTCTACAGGCT	alt_4282_missing	3	2	5	2	6	2	5	1	4	3
GCTCCACCTTAGCAAT	alt_4282_missing	5	10	2	1	8	4	8	3	12	1
TTACATACAATGTCTG	alt_4282_missing	15	19	11	7	10	10	19	12	17	8
ACCTGGGGGAAGTATG	alt_4282_missing	15	20	19	12	15	9	17	8	30	8
GTTCACCCACCTGATA	alt_4282_missing	13	29	16	14	21	12	18	9	26	4
ATACGGTTCCATCAGC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CCTTAAGCCATACCGG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TTTGTCCGCTTATCAG	alt_4282_missing	27	46	46	16	50	37	53	18	45	36
TCAGACCGGTATTGCG	alt_4282_missing	6	17	6	3	15	6	18	4	10	6
TGATTTCTCGTGGCTT	alt_4282_missing	32	39	26	27	39	23	25	31	39	17
GCACTAATGGATAGGT	alt_4282_missing	5	5	3	1	14	5	12	4	4	1
ACGAGCTTGGTTACTG	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
AATGAGTCTACAGTAC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CTGTCGGCTCTAATTT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
ATGCGTGGACGTTCTT	alt_4282_missing	7	14	13	13	26	9	29	9	16	10
TTTTTGTGTATTATCG	alt_4282_missing	7	6	7	4	9	5	3	4	10	3
CTTGATCAATCTGATA	alt_4282_missing	89	147	134	90	158	77	177	107	200	111
AATAGCACAGCAGTTT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
CAAGAATGCATGAGAC	alt_4282_missing	19	30	24	17	10	14	41	25	25	20
TGCTCCTCGGGAAGTC	alt_4282_missing	6	6	9	8	5	6	3	7	9	1
GGCCGTTCAATCTCGG	alt_4282_missing	5	26	21	14	24	23	24	8	19	4
ACATCTACGTATATTC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TCTTATAGTCGGTAGC	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
TCACTGCCATATATCT	alt_4282_missing	0	0	0	0	0	0	0	0	0	0
AGCCCATCTTGCGCTC	alt_4282_missing	9	11	12	19	16	7	13	10	16	8
GAGCCTGCTCTGATTT	alt_4282_missing	12	3	2	3	7	2	7	3	14	4
GCCCGGCAGTTTTGCC	alt_4282_missing	2	3	1	3	4	2	1	1	3	1
GTATTATATGATATCC	alt_4282_missing	6	5	1	3	6	0	3	0	6	4
ATGAGACACTTTCATT	alt_4282_missing	29	22	23	20	23	19	32	15	23	13
CTATAAATTGTCGATC	alt_4282_missing	6	10	4	2	8	2	4	3	4	1
CGCATTTAATGTCGCA	alt_4282_missing	2	1	2	5	3	1	4	4	5	5
TCCCCGACTGGTCATC	ref_3729_missing	5	15	8	9	13	6	15	11	20	5
GGTCGCCATAATTATT	ref_3729_missing	4	14	7	4	6	7	10	6	6	9
CTCACGCCTCCTGTTA	ref_3729_missing	6	24	3	5	20	4	31	2	14	2
CAGCACACTGGGTTAC	ref_3729_missing	15	36	13	12	31	11	37	9	39	11
TCTACGACTTAGGCTG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
GAGAAATTTATATTAT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
ACTGCTACGATGTAAT	ref_3729_missing	25	23	35	14	30	20	21	15	25	26
AGTGTCCTCCTCGTTC	ref_3729_missing	19	37	8	23	37	8	29	10	31	17
CTATGATACGGGTTTC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CTCCTTTTTCGATCGT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CGCCAGCGTGGGTAGG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CTTTCGCTTGTGCCTA	ref_3729_missing	17	87	25	17	50	17	59	22	68	17
AATTAAACTAAACACT	ref_3729_missing	5	9	8	12	15	11	9	7	6	7
TTTCATAGAGTAAGCA	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TGGTCTACATCGGTAT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CTGTTCTCAAAACCTT	ref_3729_missing	32	60	55	34	59	28	44	50	59	40
TGGCTATTAATGTGAT	ref_3729_missing	14	18	12	10	9	10	15	6	16	7
TGTGCGTAGCAGCAAG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CTTTCGTCATATCTTC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CCACGAATCTTCTTTA	ref_3729_missing	3	3	6	3	8	2	1	4	7	2
TATTTTCGAAGTCACG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CCGTCGTCGCGTCTCA	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CATCTAACGAATTTAA	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
GTCACAGTTTGTCTTG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CCGCCTAGTTCCAGCT	ref_3729_missing	8	10	7	8	9	3	10	5	9	10
GCATGTAAACTCCACG	ref_3729_missing	2	3	2	8	3	2	3	0	2	1
CATACTGCAGAGGTTA	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
GCCAATGTCTAAGCGT	ref_3729_missing	41	65	43	27	63	30	68	31	62	32
CGCCGTGCATGTCGCT	ref_3729_missing	9	6	12	9	13	5	10	9	18	8
CTTAGCGTCCCTTAGA	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TGATGTTCTTAGGCGT	ref_3729_missing	5	7	8	5	5	7	10	12	8	4
GTAACGTCTTCTATCT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TCTTCCACTTAGCTCC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TAGTACCATGACTGCA	ref_3729_missing	18	37	33	24	29	21	40	14	39	30
GTTAATCACTAATTAC	ref_3729_missing	19	35	22	33	34	20	45	21	30	19
GCTAGATTGATAGACG	ref_3729_missing	5	17	18	11	10	8	14	12	16	9
AATTCGGGCGTCCAGA	ref_3729_missing	3	6	5	11	2	5	3	3	4	3
TCTGCGCTGCTCCACA	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TATTTTCTGGCCCTAA	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
GGAGTTAGTGGATTCT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CACACCTTGACTCTGT	ref_3729_missing	8	16	3	3	8	2	8	7	14	2
TGAAAGCTCCGTGCAC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TCGATGGATACGTACT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
AAGTAAGTGTAAGATG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TTCTAAGCGCAGGAAT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
AGAAACTTCGGAAATA	ref_3729_missing	8	9	9	5	7	7	7	3	10	8
TCGAGCTCGACAGTAC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TTTCAGGTGTCCAAAT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
GCACCCTGTCTGTCGA	ref_3729_missing	9	16	17	11	16	17	11	14	18	14
AAATATACTTATGGTG	ref_3729_missing	3	7	5	3	9	2	8	3	9	5
GTTCTTTTGTTACAAC	ref_3729_missing	8	1	4	3	4	2	4	3	10	1
ATGAAGTAAGATCTGT	ref_3729_missing	3	2	6	2	5	3	1	2	6	5
TGAGCAAAGTCTGGGT	ref_3729_missing	4	4	2	3	4	4	11	2	7	2
TTTTTCCACTTCCACT	ref_3729_missing	2	15	5	5	14	6	18	6	11	5
TTCGGTCGTGTTCGGT	ref_3729_missing	4	13	10	12	14	14	11	9	12	8
CGCTAAGTGTACGGGT	ref_3729_missing	7	7	5	4	15	9	18	6	22	6
ATACCTCTAGAACAGT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
ATTCGATCTGGCAGGC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTTTGTAAGTGG	ref_3729_missing	13	24	12	12	21	16	24	12	31	10
AAGTAATCATCGTCTC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TTCCGGCATGTTCGTG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TATTAGGATGGTTAGG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TATTATCCAGTGCGAC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TGCGACCAAATGATCG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CATCAGGCGTTGCTTG	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CCGGGCTACAGAGTTC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
GTTTGTCTATCGGGTT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TCTTTTATTAGATGGT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TATCATAATCAGCTAC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TTACATCGGCTCCTAA	ref_3729_missing	4	7	7	4	6	1	4	2	10	4
ATTTCTCAGGCCTTGG	ref_3729_missing	1	5	8	4	1	3	4	4	6	3
CATCTTCTCAGTGGGC	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
CTTTATCCCTGAGCGC	ref_3729_missing	5	4	4	4	13	3	3	3	10	4
TTCATCGGAAATTTTT	ref_3729_missing	0	0	0	0	0	0	0	0	0	0
TCGGTCTTCTTTACAG	alt_4857_missing	14	16	11	11	14	8	11	4	17	6
CTTCTAACTACGAGTA	alt_4857_missing	17	22	22	11	15	20	31	13	24	15
GTTGAACACCGTTTCT	alt_4857_missing	52	88	64	43	104	46	96	32	112	47
GATTAGGAGTTCCTTT	alt_4857_missing	69	89	58	63	82	56	94	38	110	48
TCACACCTAACGCCGG	alt_4857_missing	9	19	12	7	16	9	16	13	13	7
TGCTTTCTTATATGGG	alt_4857_missing	39	43	19	24	37	24	44	16	40	16
CTCTGGCCTTAGGCGA	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
CTGGTTCGGTTATTCA	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
TATGCCGACTCGTCAA	alt_4857_missing	6	4	12	6	10	7	13	2	13	4
GAGCCGCTGCTAGTGC	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
CTAGGCGAGCGCGAGC	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
CGGCCATCCGGACTGC	alt_4857_missing	78	117	81	74	114	83	133	86	126	67
AGGCTGGCCGACAGAC	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
ATTTAGCTGACTGTGA	alt_4857_missing	15	25	12	11	16	13	33	5	41	14
GTTAAGAGTTATTTAC	alt_4857_missing	55	117	71	61	128	65	98	82	133	51
CGATACCGCATGTTTG	alt_4857_missing	22	28	36	26	42	14	31	16	32	9
AGCTTCCCATACTTAA	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
GAGGTTATAAAAAATT	alt_4857_missing	21	50	43	23	43	34	61	20	59	33
AGCCGACCATCTTGAA	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
AGACGTCAAAGTGTTT	alt_4857_missing	31	54	30	36	56	25	60	35	45	28
ACTTTGTCTTGTGGTA	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
ATACGGCCTTAAGCTA	alt_4857_missing	45	61	28	44	70	39	60	47	53	37
AAACGTATGTGATTGG	alt_4857_missing	70	95	66	60	100	86	98	49	114	58
AGGGTGAGTCACATCC	alt_4857_missing	84	108	91	82	113	62	107	98	117	65
GTAACACGCAATTAGA	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
GTTGATCGTTTTGAAC	alt_4857_missing	4	10	5	13	16	9	13	8	7	3
ATTTCGTCAGAGTAGT	alt_4857_missing	16	32	25	17	31	23	39	19	43	18
ACACTCGCCTCTCCGT	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
GGATCAGGTTCCGCAG	alt_4857_missing	164	251	205	157	298	158	299	130	283	156
GTCGGTAATCACAGTA	alt_4857_missing	77	130	82	66	100	55	100	47	144	41
GTTTAGCAGCTTAATG	alt_4857_missing	9	15	7	8	15	4	10	10	12	4
CTGCAGTCGAGGTCAT	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
GCTGGGTAAATACACA	alt_4857_missing	4	1	2	1	3	2	2	1	7	1
CATAAACAGCGGGCGG	alt_4857_missing	72	114	94	68	139	62	121	62	130	64
GTTGCTCTACACACCC	alt_4857_missing	10	15	13	9	15	5	17	7	23	11
ATTCCCTAGCACCTCC	alt_4857_missing	6	5	2	0	5	5	7	4	8	4
TAGCTACTGATTTGTC	alt_4857_missing	8	22	9	7	15	8	17	8	15	7
ATACAATGATGGACAG	alt_4857_missing	46	64	49	32	74	49	49	38	72	41
TTTGAACAACTTCGCA	alt_4857_missing	24	42	34	20	38	21	46	26	53	21
TCGGCATTATCATACT	alt_4857_missing	8	26	9	6	28	6	19	8	20	3
ACTATCAGTACTCTGG	alt_4857_missing	21	52	40	21	60	22	56	30	57	14
TAGGGCTTCTAACACC	alt_4857_missing	20	48	30	13	45	32	40	24	39	21
GTCACTTTTCGGTCCT	alt_4857_missing	1	1	2	0	2	0	4	2	3	0
TGATGTAAAACTTTGC	alt_4857_missing	39	45	40	35	63	32	80	29	79	16
TGATTTTCGACGTACT	alt_4857_missing	38	76	43	53	61	40	87	30	71	22
CACCCATGTTCTACCC	alt_4857_missing	23	41	30	20	33	22	40	23	56	18
TGAATGTGGTACTTGC	alt_4857_missing	21	37	18	15	37	18	59	15	33	12
CCTTGCCTTGCGGTCG	alt_4857_missing	0	0	0	0	0	0	0	0	0	0
CTCTCTCGATTCCTGC	alt_4857_missing	33	67	50	41	74	27	76	29	80	31
TCGATCGGTGCCTCTT	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
GTAGAATATTATTCCC	alt_3253_missing	21	28	23	27	35	19	45	25	33	6
CTGGTGTCGATATTGC	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
AACCGCTTCCTGAACA	alt_3253_missing	25	46	33	22	50	25	45	24	55	20
TCTGCTGAGAGGTGCC	alt_3253_missing	26	44	31	27	44	28	62	22	46	22
TAGTCTAGAGATACTT	alt_3253_missing	1	4	3	4	4	5	11	4	3	3
GGTAGATGTTACTTCT	alt_3253_missing	22	34	27	31	61	26	46	31	50	25
TAACGCGCGTCCTAGC	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
CTAAATAATCGGCACC	alt_3253_missing	24	47	26	25	46	15	48	18	62	20
TCGGGGTACATTTATC	alt_3253_missing	1	10	6	4	20	6	12	4	25	3
CGATTCGGCTCACATT	alt_3253_missing	29	36	35	26	75	27	43	37	71	17
CAGCCCACACATGAGG	alt_3253_missing	6	8	8	8	10	3	8	7	3	3
ACTTCGGCTCCTTTTA	alt_3253_missing	9	8	7	2	12	11	19	7	14	4
TTTGCCGGTTAGCAGT	alt_3253_missing	8	30	8	9	17	11	28	8	24	6
GCGAGTCGGTAACTCT	alt_3253_missing	1	8	3	2	6	3	8	4	8	5
CATAACTTTCACCCCG	alt_3253_missing	19	27	17	9	41	13	45	8	27	11
GAGGCTGACTGTAGCA	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
GATGGAATGGATCCGC	alt_3253_missing	35	64	45	30	77	35	71	41	81	28
ATCATTTAGTAGCGAT	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TTGGCGCAAACATGGG	alt_3253_missing	32	38	29	16	43	25	42	17	40	14
GTATGGCCGACATTAC	alt_3253_missing	18	21	25	15	20	22	29	8	34	10
CATTTATTGATTTCGC	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
CACGGCGTACTGCGCG	alt_3253_missing	0	1	0	0	0	0	0	0	0	0
ATAGCCGGGCACGCTA	alt_3253_missing	45	51	43	37	46	25	63	25	62	28
TGTTGTCCGGTCTCGT	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
CTGACATTCTGCAGCG	alt_3253_missing	24	36	24	19	30	20	38	10	34	22
TTACACGAAAATTATC	alt_3253_missing	21	34	29	14	20	15	47	20	41	13
GAGGCCACCATCACGC	alt_3253_missing	2	2	2	3	4	5	7	2	4	2
AGTAGGTACTTTCGGC	alt_3253_missing	6	2	5	3	6	4	3	1	12	6
TATGTCGCGACCTGCC	alt_3253_missing	35	92	74	50	98	61	105	50	97	56
CTGTCTATGAACCGAT	alt_3253_missing	1	3	2	1	4	5	1	1	1	0
GCTTCATCCCATTTTT	alt_3253_missing	70	128	93	117	161	80	170	87	183	101
GCCCGTTGTGTCCTAT	alt_3253_missing	2	8	3	2	11	2	8	4	9	2
GGCCACACCAGCCTAA	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TTTGCAGTTAAATGCG	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
CCTGTGTTCTAGAACA	ref_3253_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCAAATCGCTCG	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
GCGGTGATGGTCACTT	alt_3253_missing	13	32	31	20	49	18	38	26	25	29
CTATGACTTTGTGCGC	alt_3253_missing	9	18	14	10	20	15	16	11	19	15
TCCTTAAAGTGCTCGT	alt_3253_missing	7	14	10	6	15	7	11	9	16	4
ATCACTGCGATTGCCT	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TCAGAATGTTCGGGTG	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TTATCGCTAGCGCAAC	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TATTGGGCTAACCCCG	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
CTTTACATTTGTGATT	alt_3253_missing	43	90	57	60	75	49	82	40	92	48
GACGTTAACGAAGTGT	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
CTGTGATGTATTCTTA	alt_3253_missing	31	59	34	27	64	37	44	45	66	23
TGTCCAATCCTCCAGT	alt_3253_missing	4	6	6	7	11	3	14	3	11	2
TTGACATTGTTTATTC	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TCTCTTTAATCTAGGG	alt_3253_missing	8	8	3	6	4	3	13	2	7	2
TCCCTACCATACTTCA	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
GGTAGTTAGTTGGTTG	alt_3253_missing	8	21	11	9	20	7	12	10	8	12
TTGCTCAAGTGTTCAC	alt_3253_missing	39	74	58	38	73	33	80	47	87	46
TTGAGTTTTCCGTTCT	alt_3253_missing	5	11	2	8	13	3	14	1	9	0
ACTTATTCGCTCTATG	alt_3253_missing	0	8	2	0	9	1	4	0	4	2
CAATACTCCCGTAATC	alt_3253_missing	9	44	21	17	46	28	37	14	55	11
CTTCGTCAACAAGTTT	alt_3253_missing	41	44	31	35	40	30	45	29	44	26
ATATTCTTCCATGTCT	alt_3253_missing	34	59	32	28	52	32	47	27	39	28
AAACGTAACCATCTAA	alt_3253_missing	7	9	4	7	6	5	10	10	12	7
TTTTTCGCGTACGACT	alt_3253_missing	35	67	55	49	76	49	100	41	73	40
GCGAAGAATACTTGGC	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
GTCAGGGAGCTCAATA	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
ACGCGGACGGGGTGTA	alt_3253_missing	1	8	4	1	1	5	2	0	7	0
TGTGGGCTACTTTAGA	alt_3253_missing	37	70	38	29	56	18	71	26	51	37
AAAGATTATGATCTTT	alt_3253_missing	7	9	8	5	10	2	6	9	8	8
GGTATAGGCTCAAAAA	alt_3253_missing	38	84	58	49	84	51	81	60	86	33
TGCCATGTGCTGTGCT	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
GCAGTATCGGTAGCTG	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
AATTATGTACATCATC	alt_3253_missing	53	92	71	49	103	41	113	53	83	46
CTCCTGTGGGTAAACA	alt_3253_missing	19	23	24	24	28	14	38	25	36	12
GTTGTTCTGGTTATTC	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGCTCCCCCCGG	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
TGATTCACATGGTCCA	alt_3253_missing	11	21	11	12	30	12	32	7	22	13
CCCGAAAGCGAATGAA	alt_3253_missing	15	40	23	11	27	20	41	18	35	16
GTGGAGAAATGCGTCG	alt_3253_missing	10	15	15	11	18	7	16	12	13	12
TGATTTCGTGATGGTG	alt_3253_missing	0	0	0	0	0	0	0	0	0	0
GGGGGTAGGTGCTTTC	alt_5572_upstream	130	163	160	148	189	119	170	163	168	135
GGCCGAGAATTAGAAC	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CCCTTTGAACTCGGCC	alt_5572_upstream	51	49	59	40	42	36	40	51	42	36
GCTCATTTTGTCGTTT	alt_5572_upstream	35	40	49	55	34	42	43	28	39	49
CCAATGTCGCCATCGA	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CTGTAACCCCCATACT	alt_5572_upstream	68	61	100	73	64	74	71	80	56	60
TTAGAATCGGTTCTCC	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
TATTCTGTATCGACCG	alt_5572_upstream	43	32	47	44	29	49	39	34	43	49
CACCCCGCACGCGTCC	alt_5572_upstream	117	128	140	114	147	122	152	112	132	94
GTGTGCCGTCACGGGA	alt_5572_upstream	55	62	76	63	63	69	66	60	65	67
TAAATCAGCCCTACCA	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
GATCCTTGCTCATATT	alt_5572_upstream	23	24	34	19	22	21	27	25	14	25
GCCCATGGCCCAGGGT	alt_5572_upstream	258	206	267	228	212	205	205	217	226	207
GGTAGCTAGTGCCTGT	alt_5572_upstream	36	44	39	33	24	30	38	25	34	24
CGTTGGGAGGATTTTT	alt_5572_upstream	49	44	60	51	33	27	33	37	39	45
CAAGTTTCGTTTATGG	alt_5572_upstream	20	16	20	16	15	16	19	9	15	11
TCCTTCACGGGTCCTC	alt_5572_upstream	82	80	77	46	81	78	84	68	88	50
CGCGGGCGACTCTTTG	alt_5572_upstream	40	127	41	44	135	41	139	33	143	37
GGAGCACGCTTTGAGG	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CCCTCCCTTCGTCACA	alt_5572_upstream	12	31	26	19	33	14	28	14	23	16
GATCGTTGATGACACG	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CGCTACATGGCCATCC	alt_5572_upstream	60	73	76	47	91	44	67	57	86	54
CCGATTTTATTGGCGC	alt_5572_upstream	89	112	88	76	72	89	107	74	105	73
CCTTATTTGTCTGTTG	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
ATTTATGTGGCGTTCA	alt_5572_upstream	41	61	45	69	52	41	45	31	37	34
GATAATGGTCCTATAT	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
ATATACTATTCGACCA	alt_5572_upstream	41	46	52	42	57	42	50	37	62	45
AGCCATGGTGCCGGCC	alt_5572_upstream	39	56	80	61	53	68	56	52	50	38
ACACATTATGTGGCGC	alt_5572_upstream	46	37	67	36	40	48	40	52	47	59
TGGTGGCATACGTGTC	alt_5572_upstream	210	217	280	200	268	210	241	229	228	192
ATGATCATCGAGTTGG	alt_5572_upstream	15	6	8	8	13	19	16	10	5	16
CTTATCACTATAGATA	alt_5572_upstream	43	44	46	34	36	34	39	39	53	37
TCTCCAGAATTATGCA	alt_5572_upstream	10	30	17	22	32	17	24	20	17	19
TTTTGGGTCCCTAGGG	alt_5572_upstream	46	46	81	74	74	72	57	68	83	49
TGTCGTGTGCATTGTG	alt_5572_upstream	68	88	76	78	79	61	77	66	119	58
CTAATATGATTTTACA	alt_5572_upstream	6	14	25	20	11	22	18	15	16	8
AACAGTCCAATTTTAG	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
TTAACTGGCTCGGCTT	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CGGTACCCATAACCAC	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CGTCGAAATACGGGCA	alt_5572_upstream	26	28	9	13	31	8	30	9	34	15
TTGTTTCCACAGAAAT	alt_5572_upstream	26	29	37	23	20	17	24	31	27	28
ATATCCGCGCGCCGTA	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CAGTGATCGAGTACGC	alt_5572_upstream	100	102	128	118	120	100	121	99	133	93
CAATTACTCCGGTCGT	alt_5572_upstream	31	18	21	27	24	24	18	28	44	24
ACGACCGAGGACACCA	alt_5572_upstream	22	24	20	26	12	20	23	26	26	16
CCGGACTCGTCCAGTT	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
TTGTAGCTCTTGGCTA	alt_5572_upstream	0	0	1	2	0	2	1	0	0	1
TGTGGACATCTATATC	alt_5572_upstream	22	17	21	8	17	11	22	8	22	10
TGATCATGCTACGTCG	alt_5572_upstream	121	110	144	102	122	82	112	83	139	100
TGCCACACCTGGCATA	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
CCTCTAGGGGAAATGT	alt_5572_upstream	78	80	112	110	78	85	89	66	93	66
GCGTGCGGTCATCAGA	alt_5572_upstream	1	0	2	2	7	3	3	3	3	2
GCCTACTCAGCATAGT	alt_5572_upstream	58	61	63	71	42	72	50	53	59	45
CGGCATACTACGTGCC	alt_5572_upstream	0	0	0	0	0	0	0	0	0	0
TATGTCGAGGCGTATC	alt_5572_upstream	44	48	50	48	38	34	44	30	43	32
GATACTTACTGTGCTT	alt_5572_upstream	7	63	9	8	74	3	71	12	55	5
ATACGTATTTTGTTAT	alt_5572_upstream	31	22	28	25	36	31	31	19	37	25
TGGATGTATCCGGGGC	alt_5572_upstream	72	57	88	61	62	77	90	60	67	64
CAAGCGAATTGCGAAA	ref_5910_new	93	113	96	84	112	95	121	79	120	79
ATATTTGATGGGATCT	ref_5910_new	43	47	41	41	46	40	54	44	36	32
GGCTTTAGTTGTACGG	ref_5910_new	3	9	3	13	10	6	17	6	7	4
GTGTTCATTATTTTTC	ref_5910_new	0	0	0	0	0	0	0	0	0	0
CACCTAAGCCCTTGTG	ref_5910_new	92	107	100	98	97	72	113	78	131	68
GTCTGCGTCAGACGTT	ref_5910_new	2	3	3	6	3	5	3	6	7	5
GTATACACGGGCCGGA	ref_5910_new	56	68	69	74	86	54	96	61	82	54
AGTCATGTACCTTCCG	ref_5910_new	14	20	30	16	27	28	34	21	25	18
TTGTATCGTCGTATGC	ref_5910_new	17	17	17	15	26	10	21	9	25	11
TTTGACTGGCTAAGTT	ref_5910_new	16	38	39	30	27	28	46	15	29	24
AGGTATCTGTGGTCAT	ref_5910_new	29	44	26	23	42	35	44	43	44	26
CCTGGTCTTGCATTTT	ref_5910_new	74	107	113	89	143	83	143	75	138	55
TGCTAAGAGTCGGGTA	ref_5910_new	2	0	3	3	2	1	5	0	3	0
GGTAGCCACAGCTCTC	ref_5910_new	0	0	0	0	0	0	0	0	0	0
CGAAGCGACAAATACT	ref_5910_new	1	0	1	2	1	1	1	3	1	0
ACGAAGATCGACGTCG	ref_5910_new	19	34	16	30	29	30	34	23	23	20
AACGCCGTACTAGATA	ref_5910_new	9	7	15	5	17	7	6	4	7	6
AAAACATTAAACCATG	ref_5910_new	0	0	0	0	0	0	0	0	0	0
AAACGTTTTAGCCATT	ref_5910_new	1	0	0	1	0	1	0	0	0	0
AACTTTAAAACTATTC	ref_5910_new	22	14	16	14	13	16	17	15	16	13
GGTTTCGTCAACCCAT	ref_5910_new	11	4	7	7	7	5	4	3	14	2
TATGGTCTGAATTGGC	ref_5910_new	100	100	105	99	109	68	110	89	132	68
GTACCTGGGAATAAAG	ref_5910_new	0	0	0	0	0	0	0	0	0	0
CCTTAAGAGCTCATTA	ref_5910_new	48	72	82	62	94	42	96	42	102	49
ACTAAGGTTGATTTTT	ref_5910_new	105	161	125	118	151	117	145	110	178	104
CTGAGGTCCACCAGGG	ref_5910_new	9	17	11	8	20	14	16	11	16	10
GAGCATGTATTCAGTC	ref_5910_new	81	61	92	65	84	55	76	56	88	68
CACTCTGCATAAGTAG	ref_5910_new	5	6	3	3	13	6	8	3	16	9
TTCACTGGAGCCTTCT	ref_5910_new	72	86	89	60	66	73	72	55	91	66
CATCGCATCCTGCTCT	ref_5910_new	0	0	0	0	0	0	0	0	0	0
AGTACGCATGTTCGCA	ref_5910_new	5	17	11	9	19	9	16	5	20	10
ATAGTTAACCAATTCT	ref_5910_new	12	39	29	24	35	22	40	13	52	17
CTTACAGGACATGGGT	ref_5910_new	59	48	57	52	56	38	58	40	47	40
CTATGTGGTTTTGGAG	ref_5910_new	25	37	35	26	49	29	44	23	46	20
TAAATATACTAAATCA	ref_5910_new	6	5	8	4	15	8	8	15	15	3
ATCTTACGTGTTGACC	alt_919_fdr	179	70	235	171	81	181	76	175	71	170
GATGATTCGTGTCGAG	alt_919_fdr	267	129	373	287	97	288	119	298	119	269
TTTACTTCGGTGGGCC	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTATCCTGGTCTT	alt_919_fdr	143	98	196	186	90	162	73	180	84	136
TGACTACATTGGTTCT	alt_919_fdr	275	98	346	289	107	252	131	218	122	206
TGGTTTAACGACCTAC	alt_919_fdr	38	45	76	60	37	42	40	44	43	38
TTGTGTACCGGTGCCC	alt_919_fdr	185	90	244	223	91	187	97	217	85	171
CGAAAATACAGAGAGT	alt_919_fdr	13	6	11	19	4	12	2	17	5	15
TGTTAACCCGTTCGCT	alt_919_fdr	121	34	131	89	59	79	42	98	35	106
AAATCACGGTTGGGTC	alt_919_fdr	30	12	34	30	21	35	16	32	26	32
CCTCTTGTACTTGACG	alt_919_fdr	174	92	216	202	94	164	94	162	94	158
ACAACGCGATTGTTTT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
CCACCCAAGTTCTTGA	alt_919_fdr	34	16	52	28	17	25	15	34	14	38
TGGGTCTATGTATGGG	alt_919_fdr	28	8	36	35	13	46	9	28	10	23
TTTATCGTATCAGCAC	alt_919_fdr	224	122	273	277	98	231	108	218	92	234
AGGGTACAGGGGTTAT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
GCGTCGTCCGATGTTA	alt_919_fdr	40	14	37	27	13	35	16	22	13	41
GCGAATTCGTTGGACA	alt_919_fdr	74	26	92	53	31	56	24	69	24	77
TTTTGGTCTAAGCGAA	alt_919_fdr	182	89	250	201	67	199	89	178	101	154
CCCTTGAAAATCCATA	alt_919_fdr	13	5	18	14	2	8	4	14	10	10
GCTATACTATTGCCGC	alt_919_fdr	57	32	75	73	34	48	26	62	28	67
TTCCCTTTGGGTCAGA	alt_919_fdr	4	5	13	16	6	15	3	18	6	15
TTTGGGTAAGCACTAT	alt_919_fdr	78	15	85	101	38	78	35	68	41	68
GGGGCAATACAAGGGA	alt_919_fdr	50	20	74	73	28	67	29	59	35	62
GGAGCCCGAGGCTACA	alt_919_fdr	85	29	108	108	26	81	36	77	23	90
ATGTGTTCCCGGCACA	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
TAGACTATATGGTTTT	alt_919_fdr	4	6	4	3	5	3	4	2	1	5
CGTCCAGCTCGTTTTC	alt_919_fdr	161	81	204	204	104	161	55	180	80	154
TCCTTTCTATATATGA	alt_919_fdr	96	31	91	77	50	70	47	68	37	68
TATCATAATTTCATGT	alt_919_fdr	17	6	29	17	8	22	7	10	9	20
CATACAAGGTTCCGAT	alt_919_fdr	23	11	28	20	10	32	12	25	13	27
TGACGTAATATGTTGA	alt_919_fdr	19	6	21	15	6	20	5	17	7	15
GTACCCAACAACGACT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGACTCTCCGGTT	alt_919_fdr	106	60	137	127	43	115	66	101	57	96
TATTGAATTGTCAAAT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
CGGACAAAATTCCTGC	alt_919_fdr	24	10	29	21	7	21	12	23	6	17
ACCTTCGACACCGCTT	alt_919_fdr	143	67	182	164	53	131	84	148	75	110
CTTTATGAGCTAGAGC	alt_919_fdr	21	12	24	19	17	20	20	19	20	15
AACGACTACCCCTGCA	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
GGAGTAACCCCGGTAA	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTTATGTCAACGG	alt_919_fdr	41	21	68	68	26	53	31	46	43	62
TTTAATCTGAGGATCG	alt_919_fdr	143	38	138	119	47	126	47	115	56	124
TCTGAAGGAACTTGTG	alt_919_fdr	104	64	102	103	52	72	69	104	69	88
TAGGTTCTGCGCTCGA	alt_919_fdr	68	32	92	96	37	82	24	78	21	63
TTGTTAGTGTGATTAG	alt_919_fdr	130	65	153	108	54	100	60	108	72	112
CGGCACGGAGCCGCTT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
GTCTCCCAGTATTTAC	alt_919_fdr	25	26	38	31	15	25	23	33	12	20
CAAGGTCTTTTTTTTC	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
CTGAGTAAAATCTTGG	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
TCCCGCGCTATCGGTG	alt_919_fdr	98	25	97	93	41	79	57	84	49	78
TACTACTACGCGGGGT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
TACGACCAATTACACC	alt_919_fdr	186	70	230	172	73	169	89	181	75	144
TATTGATTTGAATCTT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
CACCTTCTAGAGTAAC	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
GCTACAGGAAGTAAAC	alt_919_fdr	119	57	138	104	44	89	53	90	57	89
CCCGTAGTACCGTTTA	alt_919_fdr	19	14	35	29	16	22	12	30	13	27
TTGTTATACAACGGGG	alt_919_fdr	7	1	7	2	0	3	1	4	3	1
CACATTGTCAATGCTT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
AGTTAACTAAGAGAGT	alt_919_fdr	137	51	192	183	74	157	77	149	60	154
TTGCCCGTCACCTCTC	alt_919_fdr	476	160	510	443	162	436	174	436	178	405
TCAATCTAATGTCGGA	alt_919_fdr	10	2	10	10	1	2	0	7	1	3
TGGCATACTTCATTTT	alt_919_fdr	46	20	59	54	25	56	27	47	15	43
GCAATCGCACTTATTA	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
TCGTCTTCTGTATTCT	alt_919_fdr	13	7	13	8	5	17	4	7	2	18
ATCATTGTTCCTTGCA	alt_919_fdr	28	17	21	26	6	21	6	21	9	27
GCCGACTGGTTACCAT	alt_919_fdr	16	10	35	32	13	28	11	18	12	17
CCTAGTATCCGTTAAT	alt_919_fdr	29	8	36	35	8	22	12	23	12	24
TCACTCGCGGTTTTTA	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
CCTGGTTTTACTTAGG	alt_919_fdr	13	7	14	11	8	7	5	8	7	9
GTGTGCTAACGATTGG	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
GCCAGAACTCATCGGT	alt_919_fdr	190	68	238	208	90	183	87	195	96	185
ACCCGATGTGCGCCGT	alt_919_fdr	245	107	286	272	121	253	109	267	133	266
TCACGTTTATTCAGTT	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
TCATCGAGTTAAATTT	alt_919_fdr	12	2	12	11	3	7	3	12	4	6
GAGCCGTATTCGAACT	alt_919_fdr	13	7	8	16	4	12	4	8	5	13
CCCGGCCTATGGCCGT	alt_919_fdr	12	6	13	14	6	9	8	11	6	9
TACTCTTACGTTCTTG	alt_919_fdr	525	245	627	537	266	464	269	473	284	382
CTCTGCGTTGAAACAG	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
CTTAGAGGTAACAGCC	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
GGACCTCAGGCTTTAT	alt_919_fdr	1	4	2	0	2	1	3	3	7	1
CCGGTCCTGGGACCTG	alt_919_fdr	33	10	40	39	17	28	30	40	15	29
TGGCTCACAATCCTGA	alt_919_fdr	87	40	123	90	19	107	39	78	35	78
ATAAATAACTTGTGAT	alt_919_fdr	75	47	105	97	20	74	36	84	35	65
CGGGACCTCGTCCTAT	alt_919_fdr	43	34	55	54	38	31	34	50	31	40
GCGTGTGTTAGTCTCT	alt_919_fdr	148	88	195	169	82	146	57	146	112	156
ACAGTTTCGACGGTAA	alt_919_fdr	20	7	18	22	3	9	6	9	4	13
TAGCGGCCGGTAATGA	alt_919_fdr	91	37	132	121	31	114	57	75	39	73
TTTTCGTTCTCTGATG	alt_919_fdr	66	34	68	61	29	53	24	58	32	49
ATCTGGCCAGTCTGTG	alt_919_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGTGTAATTAAT	ref_1834_upstream	110	68	93	92	75	91	73	76	81	82
TCTGCTCTCATGGGAT	ref_1834_upstream	25	19	21	24	17	15	18	20	15	15
ACTCATACCATTCTAT	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
AAACCGATATGGCTCG	ref_1834_upstream	46	35	65	53	46	36	46	42	43	39
GGCATCATCTGTCATG	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
GTCGTGCTATTAGTGG	ref_1834_upstream	25	12	20	13	11	11	8	12	10	11
TGCGGTTTGCTATGGA	ref_1834_upstream	49	34	72	66	39	41	53	61	56	36
TTTTAGTCCGAATCTC	ref_1834_upstream	1	1	0	0	0	4	0	0	0	2
CTCGTACCTCACTAAG	ref_1834_upstream	37	42	52	28	44	32	39	34	48	35
GCCGGCCGTTTTGAAC	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
AAGCGTTCGTTATGGT	ref_1834_upstream	8	7	12	14	5	6	12	10	9	9
CATCTTCAATAGGCAA	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTTGGACATCTAG	ref_1834_upstream	89	94	111	105	96	100	83	91	87	80
ACTATCAGTGCTAGTT	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
CTATTGGCTGCAATAA	ref_1834_upstream	237	205	280	255	212	247	221	248	216	223
TTCATGCATGTCCAGC	ref_1834_upstream	57	57	67	59	42	64	57	46	45	52
CAGGCTCCACGCCTTA	ref_1834_upstream	25	20	32	24	16	19	17	20	24	22
TTTTGAACCTCGAACA	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
GCTCGGTACTGATCTT	ref_1834_upstream	106	103	148	128	104	127	108	117	102	125
GTTATCCCCTGTTTAA	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
TTGTGTTTGCCCCGAC	ref_1834_upstream	68	58	78	81	44	81	61	55	52	52
ATATTAATTTAACACA	ref_1834_upstream	10	7	13	11	2	4	4	13	9	5
GCACGGTGACTGGTTG	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGTCAGATGACC	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
AATGTTGATCCTTGTA	ref_1834_upstream	97	70	104	91	61	101	63	81	47	90
ACTGCTCCTAACCCTC	ref_1834_upstream	24	28	32	37	27	29	31	24	40	30
TAATTCTTGAATGCGT	ref_1834_upstream	42	21	70	40	24	39	28	35	29	40
ATGTTACATTACTCCT	ref_1834_upstream	34	15	31	22	16	28	20	26	24	16
GCTGTTGTATTTGCAT	ref_1834_upstream	103	81	109	89	80	108	85	89	95	97
TTGTGGAGACCCTGCC	ref_1834_upstream	65	40	64	41	49	48	44	53	51	62
TCGGAGTACTTGAGTC	ref_1834_upstream	19	19	19	15	25	22	18	18	30	18
GATTCGATCTAAGTAG	ref_1834_upstream	43	43	39	41	31	44	28	36	25	27
GTTAGCCTAGGTTTTA	ref_1834_upstream	41	35	64	50	47	50	42	42	36	40
AATAGGTCTCCCAATT	ref_1834_upstream	4	5	6	7	1	1	3	3	6	2
CCTAAGTCTTCGAGCT	ref_1834_upstream	28	28	30	29	19	21	27	21	26	16
AACAACGCCTGTTTCG	ref_1834_upstream	13	7	19	16	11	10	9	12	13	9
CGGCGGTTTTCTGTAA	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
TACTCCTCGCCTACTC	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
CGCCTTCCTCTGTCAC	ref_1834_upstream	10	6	9	14	7	15	20	6	8	14
ATGCTATTGTGCGTTA	ref_1834_upstream	38	37	45	38	26	35	28	22	29	22
CAGTCCTACTTTCCTG	ref_1834_upstream	4	12	4	7	5	8	18	5	8	6
TGCGATTCATACCGGC	ref_1834_upstream	38	24	39	43	24	25	18	35	22	31
AGACGGGAGTCCCGCT	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
TGCGCCTCGATGTCTC	ref_1834_upstream	55	33	57	47	36	67	36	59	45	54
TGGTCTTAATGACTCC	ref_1834_upstream	7	7	9	9	8	6	2	3	7	5
GGTCTGTAACGTGTGG	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
CTGGTCAATCGTATCG	ref_1834_upstream	22	18	28	28	18	24	21	25	21	15
GGCCTAGTCAGCATCA	ref_1834_upstream	145	93	188	141	89	140	113	125	125	156
ACGGGGGTTGGGGTGA	ref_1834_upstream	0	0	0	0	0	0	0	0	0	0
AGCTCTCGGTGCTTCC	ref_1834_upstream	14	15	14	14	21	18	13	21	21	9
CCACACACAAGACTGT	alt_5940_new	59	83	85	52	66	48	88	35	73	45
CCATTTTGAGGACGTC	alt_5940_new	67	61	64	48	66	61	87	53	71	57
TATCGACGGTCGCTAC	alt_5940_new	0	0	0	0	0	0	0	0	0	0
TGGGTATCCTAACGGT	alt_5940_new	0	0	0	0	0	0	0	0	0	0
TTCGTTTTCCTTAACG	alt_5940_new	5	3	5	6	8	9	8	8	7	4
CGCTTCCTTCCGTTCA	alt_5940_new	10	44	16	17	27	25	43	19	31	18
TGGGTTTGCCGGCAAT	alt_5940_new	7	6	4	8	11	6	6	8	17	4
CAAGCCAGTACCTGTC	alt_5940_new	2	5	3	4	3	1	6	4	6	1
GTCTGCGGGCGAACCA	alt_5940_new	17	35	24	22	30	27	34	23	49	30
CTTTTACTGTTTACGC	alt_5940_new	0	1	0	1	1	1	0	1	0	0
CCCCCGCTTCTTTGGA	alt_5940_new	12	11	12	6	14	14	15	8	18	8
AAATTCTTTTAGAGTT	alt_5940_new	26	10	11	17	19	12	15	15	19	9
TCTAGAACGTGTTATG	alt_5940_new	0	0	0	0	0	0	0	0	0	0
CCTATGTCCTGTTTAA	alt_5940_new	0	0	0	0	0	0	0	0	0	0
CGGTAGTCATTCCGGT	alt_5940_new	58	74	52	39	64	33	76	36	57	35
GCCATTCGCATCGGCA	alt_5940_new	1	1	0	0	2	0	1	1	4	0
TTTTGTGTATGTAGCT	alt_5940_new	21	23	23	26	40	26	37	20	21	19
TCTCATTCCTGCCGGC	alt_5940_new	7	9	5	7	5	6	5	2	4	9
CCTGCACAGGTAAAGC	alt_5940_new	1	2	2	1	3	1	5	3	3	5
CCATATTGTGTCAGAT	alt_5940_new	0	0	0	0	0	0	0	0	0	0
CGCGGACTCTCCGGGC	alt_5940_new	0	0	0	0	0	0	0	0	0	0
TCAACAACCTATATTG	alt_5940_new	0	0	0	0	0	0	0	0	0	0
GAGCCGGTGCTTTTTA	alt_5940_new	7	17	14	12	9	8	8	10	10	7
TCTCACGGCTATTTTT	alt_5940_new	35	35	30	34	37	14	46	17	43	32
CTTTTATCAGGCATGG	alt_5940_new	2	2	1	2	5	0	3	2	2	0
ATATTCGGTTCAAAGA	alt_5940_new	24	37	42	30	43	33	45	39	47	29
ATAGCTCTGCCCTGAG	alt_5940_new	10	12	7	9	7	4	10	7	18	6
ATACGGCAGTCTGCTC	alt_5940_new	5	11	8	10	5	3	11	1	14	4
CTCTTCCACCCCTGCG	alt_5940_new	19	27	20	18	22	14	26	11	21	22
TGGTTTGCGTGATTCT	alt_5940_new	0	0	0	0	0	0	0	0	0	0
GCGGAAGCGGGCTATC	alt_5940_new	0	0	0	0	0	0	0	0	0	0
CAGCGTAAGATCCCAG	alt_5940_new	2	12	2	5	10	8	13	2	10	2
GGTCAGTGCCCCTTGA	alt_5940_new	0	0	0	0	0	0	0	0	0	0
CAGAACAAAAATTTCC	alt_5940_new	2	1	1	0	8	0	8	0	1	3
TGTGTTTTGCTCAATC	alt_5940_new	6	8	5	7	8	4	6	1	5	3
TCTTATCTCGGGATCA	alt_5940_new	14	21	19	14	42	18	28	13	28	13
TTAGGAATGGGAGTAA	alt_5940_new	27	34	17	21	37	31	36	30	34	17
CTTTCTCCGAATATTG	alt_5940_new	0	0	0	0	0	0	0	0	0	0
CAGCACGGTACAGAGC	alt_5940_new	14	27	28	13	31	15	31	17	32	15
CTGCGGTGCCAATTCC	alt_5940_new	29	45	25	31	52	21	61	13	34	27
CCGAATTGAGTTCTCT	alt_5940_new	1	3	8	0	2	1	3	2	7	5
ATAGAACTTTAAATCG	alt_5940_new	14	13	11	6	10	10	19	7	22	11
TCCCTCGTCATAAGCG	alt_5940_new	2	38	3	5	41	5	30	3	34	1
GGGATCTCTTGAATCC	alt_5940_new	58	74	47	34	72	63	81	59	42	39
GAGGGAAATTATTCTG	alt_5940_new	8	3	7	5	4	8	7	5	9	6
CGTAGGTACTTATCAC	alt_5940_new	0	0	0	0	0	0	0	0	0	0
ACATAGGTCATACCCC	alt_5940_new	6	10	10	6	9	6	13	9	16	7
CCACCGCTATTCCTGA	alt_5940_new	18	42	24	23	38	19	35	12	44	14
GGGTTTAGACACTGTC	alt_5940_new	135	177	140	118	206	113	195	89	179	100
GGTCCCTAGCTGCAAC	alt_5940_new	10	8	4	2	6	3	6	4	5	8
GACATATGTGAGCGAG	alt_5940_new	2	3	3	2	2	5	8	0	5	2
CATTAGGCAAAGGGTA	alt_5940_new	0	1	2	3	2	5	5	1	2	0
AGTGCGGAGTGCCTAC	alt_5940_new	0	0	0	0	0	0	0	0	0	0
TACGTGCGGTATTTGG	alt_5940_new	72	93	77	65	91	77	94	61	112	69
GATATACATTGACCTT	alt_5940_new	0	0	0	0	0	0	0	0	0	0
ATTACTTACCTAAAGG	alt_5940_new	0	0	0	0	0	0	0	0	0	0
ATCTTAGATCGCCGAT	alt_5940_new	23	24	24	11	31	12	24	12	34	19
ACAGAATTTGTATCTG	alt_5940_new	0	0	0	0	0	0	0	0	0	0
TTTAGGATGCGTGTTT	alt_5940_new	2	4	1	0	0	2	1	3	0	0
ATTTGACGTTATTTAC	alt_5940_new	0	0	0	0	0	0	0	0	0	0
TGTTTGTTGGGCCTTC	alt_5940_new	0	0	0	0	0	0	0	0	0	0
AGTCCGTCAATTGGTG	ref_5893_new	15	32	30	9	50	23	35	13	44	13
TGTTGGTTATTCCCGT	ref_5893_new	0	0	0	0	0	0	0	0	0	0
GTTGTCCTCACGGTGG	ref_5893_new	6	22	11	2	23	12	14	10	20	6
TACTATCCGCCTGAAG	ref_5893_new	9	21	16	11	16	11	11	12	22	9
TCGTTCATTGATTGCC	ref_5893_new	19	43	28	28	78	28	45	21	59	25
CGGGAGGTACGGTTCG	ref_5893_new	0	0	0	0	0	0	0	0	0	0
AGTGTAAGGGTCGTAT	ref_5893_new	28	53	35	38	56	18	49	25	57	27
GTCCTCGTCCTATCTC	ref_5893_new	84	135	95	87	131	79	128	82	169	84
ATGAGGGCCTGTTCAA	ref_5893_new	18	46	19	9	36	27	36	20	31	13
GCGTCTGTGTCTGGAG	ref_5893_new	14	39	30	25	56	23	59	14	53	29
GGGCGCTGACATTTCA	ref_5893_new	0	0	0	0	0	0	0	0	0	0
TTCACTGCTGCTTTTT	ref_5893_new	40	46	45	28	55	33	48	25	53	41
GACATTATTTTCACAC	ref_5893_new	0	0	0	0	0	0	0	0	0	0
TTTCACTGGAACTTCA	ref_5893_new	0	0	0	0	0	0	0	0	0	0
AAGTGATCATGGATCC	ref_5893_new	71	134	108	89	167	82	172	70	179	73
TTTACCTAACATTAAT	ref_5893_new	49	69	56	53	68	32	70	31	68	44
CATAAACTTTTAAGTC	ref_5893_new	0	0	0	0	0	0	0	0	0	0
AGTCTATCAGACCGGC	ref_5893_new	11	16	10	10	16	15	11	10	19	10
TCGTCATCGCTCATTG	ref_5893_new	11	22	10	9	26	14	19	8	16	12
CAGCGGGACCACGGCC	ref_5893_new	37	101	38	35	119	28	92	37	85	18
CGACCCTCTCCTTAGG	ref_5893_new	8	23	12	7	28	9	23	11	25	7
CCTATGTTGATCGTTC	ref_5893_new	0	0	0	0	0	0	0	0	0	0
GTGATTGTTGGCGTAA	ref_5893_new	72	143	90	80	128	86	145	75	162	73
GGTTGGGGTACGTGCC	ref_5893_new	21	26	16	16	25	18	24	7	21	12
TAGCCGTCGTACGGAT	ref_5893_new	8	21	11	10	35	7	34	15	21	15
GAGGCGTTGCGGTCAA	ref_5893_new	0	0	0	0	0	0	0	0	0	0
GGCTGGAATCGCCCGA	ref_5893_new	30	35	26	22	33	26	50	29	38	30
CTCCTGACACATCCGA	ref_5893_new	2	9	3	7	11	3	11	6	8	6
TGCTACACTCTCACGA	ref_5893_new	0	0	0	0	0	0	0	0	0	0
TCTTCGGTTGTGACCT	ref_5893_new	0	0	0	0	0	0	0	0	0	0
ATATAGGTCCGGTCCC	ref_5893_new	0	0	0	0	0	0	0	0	0	0
GCGGGATTCGTTACGA	ref_5893_new	11	16	14	7	12	7	16	8	13	13
TGTTTTAATTTAGTTC	ref_5893_new	3	6	3	1	9	7	8	3	6	1
GTGTTTTCGGGTTTTT	ref_5893_new	37	57	32	23	63	31	59	32	60	16
GCTTTGACTTGTGACG	ref_5893_new	44	97	78	61	106	51	127	63	95	44
ATAATGGCCTCAACCG	ref_5893_new	0	0	0	0	0	0	0	0	0	0
TTGGGGGACATATGTA	ref_4024_missing	9	20	14	13	32	9	18	7	38	7
GCAGTCTCTAAGATGC	ref_4024_missing	24	46	34	31	30	16	40	16	50	26
TAGCTGATCAAGGGGC	ref_4024_missing	72	119	89	80	102	58	108	70	137	62
GCAACGTGGATACGTT	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
AAGCCAGATTCCCACC	ref_4024_missing	1	4	2	3	6	2	5	1	7	2
GCCATCCGGGATCTGG	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
GCACGGATCGAATAGA	ref_4024_missing	11	8	5	7	13	9	11	6	15	4
GCGTACGCTATTTACT	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
GGCTCACTTGCTCGGG	ref_4024_missing	34	65	40	43	60	36	69	30	67	35
CAACCTGTCGAGCTAA	ref_4024_missing	14	32	22	18	33	8	27	23	30	20
GCTTCATTCCTTCATG	ref_4024_missing	41	78	33	36	78	41	85	30	69	39
CGTAACCAAGTGTTCA	ref_4024_missing	1	4	5	3	6	1	4	3	3	1
TCGACGAAATAAGCGA	ref_4024_missing	5	2	2	2	5	3	2	5	3	0
GAACGGGGGTTCAGAA	ref_4024_missing	24	49	61	54	58	27	68	34	66	36
CTATCTGATCTTTACG	ref_4024_missing	2	11	15	5	14	4	7	5	7	7
TATACAGGTACCTTTT	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
TCGTCACATGCCTTAG	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
GTTTCAAATTGCGTGT	ref_4024_missing	23	41	23	12	48	27	43	38	43	28
CATATGTACTTACATT	ref_4024_missing	0	8	1	1	8	1	7	1	7	1
CTACCTAGCCAGTCCC	ref_4024_missing	24	42	38	24	48	23	35	28	51	21
GCCCGATGGCACGTTG	ref_4024_missing	62	98	78	65	121	83	125	67	119	51
GTGAGCTAATTTTACA	ref_4024_missing	68	113	93	78	103	53	144	63	124	65
TGTTTTAGTTCATCTT	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
AGTTACACTGTGTTTT	ref_4024_missing	17	22	20	15	26	8	30	11	31	13
CATAGTGTTTTGATGG	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
GTCGATCTCGCTCTCG	ref_4024_missing	14	20	16	18	17	13	21	16	22	15
CCGTTCCTATTCTCTG	ref_4024_missing	1	6	3	0	5	1	4	2	5	0
CCCGATAACACGCATG	ref_4024_missing	142	221	163	147	234	151	228	120	256	107
ACGACCATTGATCCTT	ref_4024_missing	50	77	56	52	98	56	76	44	86	44
GTTCAGGGTACCCAAC	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
TCTTTCTGGATTGTAT	ref_4024_missing	61	94	61	66	94	65	96	44	106	44
TTATTGTTGGCAGTAA	ref_4024_missing	7	14	13	6	21	11	26	7	24	3
TGGTCGGCACCCTACG	ref_4024_missing	27	49	43	32	31	29	49	28	48	22
AAAGCCGCTCATCGTT	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
CCTGATGATTTCGACC	ref_4024_missing	18	30	28	24	41	16	44	25	39	22
TACTCTAAGGTGTGCT	ref_4024_missing	2	5	2	4	13	10	14	6	10	7
GTGGAAGAGATATAAG	ref_4024_missing	0	0	0	0	0	0	0	0	0	0
CTCTAAGGTCTGATAA	ref_4024_missing	7	17	11	9	19	13	23	13	21	19
CCTGCGACCTTACTCA	ref_4024_missing	17	32	15	12	24	14	48	9	41	11
TAATGGGGACGGTCTA	alt_6107_new	41	16	66	49	19	44	14	41	17	35
AGAAATTGTGTTGGGA	alt_6107_new	97	33	117	107	38	52	34	70	31	82
GCGACTGCATGGTACC	alt_6107_new	0	0	0	0	0	0	0	0	0	0
AATCCTTTTCACGGAA	alt_6107_new	12	1	18	21	2	16	6	12	4	5
CGATTATATGTTTTTT	alt_6107_new	31	4	29	22	2	14	4	19	7	9
GAATTAACCTATAGTA	alt_6107_new	676	236	752	679	204	587	254	593	216	550
CCAGGTGTTGTTCGAA	alt_6107_new	10	12	8	8	7	6	6	18	5	8
TGCGTTGTCGTGGTTT	alt_6107_new	65	21	88	64	17	68	27	61	27	44
TCGGAAGTCACGACGC	alt_6107_new	39	15	65	52	5	32	15	53	18	41
CGGTTTCGTTGTCGCA	alt_6107_new	14	38	21	14	37	9	35	17	44	11
TGTTCGATGTTTTTTG	alt_6107_new	78	26	106	97	26	82	40	61	43	73
TGCGTGTAAAACCCGC	alt_6107_new	0	0	0	0	0	0	0	0	0	0
AACAAGCAGGGCTGGG	alt_6107_new	0	0	0	0	0	0	0	0	0	0
GAACGGATCATACGCT	alt_6107_new	41	10	30	36	11	20	3	31	18	34
CAGTTTAGTGCCACGA	alt_6107_new	0	0	0	0	0	0	0	0	0	0
TAAAGTATCCGCATCA	alt_6107_new	156	47	187	183	64	131	58	175	45	169
TAATGGTTCGCCGTGC	alt_6107_new	134	41	160	161	48	109	53	131	44	106
CCGACACTTACCATTG	alt_6107_new	77	67	105	80	50	71	54	71	56	54
TTGTCCGCACCGTAAT	alt_6107_new	0	0	0	0	0	0	0	0	0	0
TACCTCTGAACGTATT	alt_6107_new	22	12	46	26	13	26	10	42	7	23
GGTGTAGCTTTGTACG	alt_6107_new	72	14	70	75	32	73	21	54	39	42
TTTTGAACGAATCAGC	alt_6107_new	58	29	84	66	38	69	30	60	37	66
AGCGGATCCATTGGAC	alt_6107_new	0	0	0	0	0	0	0	0	0	0
CATGCTGAGAACAACT	alt_6107_new	250	122	323	272	77	241	99	247	109	233
GTATCACGAATATATC	alt_6107_new	31	14	50	31	10	26	16	33	11	36
ATTGAGCGTAAACTTG	alt_6107_new	35	17	46	42	7	35	15	51	19	39
CACCGATGTTCATTCC	alt_4116_RC	30	104	45	32	140	20	122	31	149	18
CTGCGTCAATGTTTGT	alt_4116_RC	1	6	1	8	6	1	6	0	4	2
TATATCTTTCTATAGA	alt_4116_RC	14	31	20	13	35	13	31	14	38	18
TGCGTTAATCGATCCT	alt_4116_RC	6	9	11	12	15	8	7	10	21	5
TCGATGTGAAAGTCTT	alt_4116_RC	19	30	17	26	35	14	38	29	33	14
AATGTGACATTCAATC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
TTGTATTTCTGGGCAC	alt_4116_RC	12	13	12	4	16	8	26	12	17	8
CCACGTAAGGGTATCG	alt_4116_RC	11	14	14	12	17	10	13	6	17	12
ACTTTACCGACGTAAT	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
TTGGTGCTCCACTGGG	alt_4116_RC	2	7	3	3	4	1	4	5	4	1
GAGGGAAGGCGCTGGC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
TCTGACTTCGGCGAGA	alt_4116_RC	0	2	3	1	1	1	2	0	1	0
ATGGCCAGTAGCTTCG	alt_4116_RC	4	16	8	13	16	8	9	6	21	8
TGCTCTGCATTCCCCG	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
TCTTTATACTCTATCG	alt_4116_RC	9	24	13	13	25	10	26	7	22	4
CGCGTCAGTGGATCTG	alt_4116_RC	28	37	39	37	49	27	50	31	63	30
GGCGGAAGCTTCGTGT	alt_4116_RC	48	57	53	38	63	39	58	19	55	22
CTCTCTAGAGCACCTC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
TGCTAACCCTTTGATA	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
AGGTCTTCGTCTGTGC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
TAAAGCCTGTTGTGAG	alt_4116_RC	13	12	12	5	16	6	18	8	20	9
AGCTGCAAGGTCTTTG	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
GCCACTTCGGGCTACC	alt_4116_RC	1	0	1	0	3	1	0	0	2	1
AGTGGCACGGTTGAGC	alt_4116_RC	45	75	45	54	78	47	81	42	72	43
CTACTGTCTAATCGAG	alt_4116_RC	4	10	0	4	5	1	2	2	8	4
CGAGAGGAAACCTAGT	alt_4116_RC	1	0	2	5	6	1	8	3	6	3
CGCAGAGCATGGACAA	alt_4116_RC	21	41	34	20	25	23	41	15	34	27
GATGGACAGAACATAT	alt_4116_RC	52	117	61	71	109	59	104	56	98	50
TTAGTCACATGGAAGC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
GTCCAAAATTTATTAT	alt_4116_RC	12	6	11	8	17	6	14	6	17	4
CACCCTGATGGTGCAC	alt_4116_RC	20	62	27	28	51	22	45	20	55	19
TAGCACCCGCTATATG	alt_4116_RC	41	49	36	47	75	31	63	43	71	30
CATGGTTCATTGCCTG	alt_4116_RC	0	6	4	1	11	4	15	2	18	5
TACGGGTACGAGAGTT	alt_4116_RC	11	11	9	8	13	8	14	10	20	6
GCAATTATGATCCAAA	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
ATCGTGTGTAGTTATA	alt_4116_RC	2	3	6	0	0	0	5	0	3	2
CTTTAATGTGGACCCC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
CAATGCAGTTTTGGGG	alt_4116_RC	9	3	7	2	2	5	8	3	7	2
CCTTTGGCCTTTCCGG	alt_4116_RC	21	25	18	13	36	14	46	14	37	10
TCGCCAGTTTCAGCTC	alt_4116_RC	8	22	11	5	9	4	11	5	30	4
GCTGCGTGAGAGTGCC	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
GTTGGCACATTTTTTC	alt_4116_RC	7	13	13	3	22	9	10	8	15	8
CTCTTCTTCACCAGCG	alt_4116_RC	14	29	9	23	32	22	43	9	21	17
CATGCTACTCTCAGTA	alt_4116_RC	48	103	53	71	108	49	106	42	137	32
TGAAGGGCCTCCAAAT	alt_4116_RC	7	29	23	18	37	14	28	20	23	15
TTTGTGACACAGACAT	alt_4116_RC	11	16	10	19	20	9	23	11	20	8
CGCCCGACGTTCCCAA	alt_4116_RC	6	11	6	7	14	6	10	8	11	4
ATCTTGTATAGGCTAC	alt_4116_RC	66	135	99	83	157	76	160	77	140	74
AAATTTGTTTGTCTAT	alt_4116_RC	19	30	33	25	34	34	48	19	43	25
GTAACCTCCAGGTTTG	alt_4116_RC	18	37	20	11	41	10	36	20	54	20
GTAGGCATCACGGCGA	alt_4116_RC	5	9	6	7	5	3	7	8	5	6
GCGTTCCGGAAACTCC	alt_4116_RC	3	27	15	6	20	4	19	7	23	5
AGACAAACTCCCTATA	alt_4116_RC	4	35	13	8	47	11	39	7	36	9
CGCCGCGCAGGTCTTT	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
CTAAACGTAACCTATT	alt_4116_RC	9	13	19	15	27	6	27	16	21	13
ACGGTGGCTCATTTCA	alt_4116_RC	15	37	32	23	41	15	47	19	36	28
GGTCTCTCCCTGTTCT	alt_4116_RC	25	47	39	13	57	32	58	18	49	16
GAGTTAACTATAGGCA	alt_4116_RC	22	21	13	23	26	12	41	17	34	13
TGCTATGTCTTACCCT	alt_4116_RC	24	52	36	26	67	25	63	29	43	31
CACATGCTCTCATGCC	alt_4116_RC	17	16	10	9	17	4	20	10	16	12
GCTCTGTTGTGTTCAT	alt_4116_RC	5	16	15	11	22	11	17	12	26	10
ATCTCAGAACGGGGGC	alt_4116_RC	21	26	14	12	31	16	44	16	33	16
TTGATTTTCCACTACG	alt_4116_RC	22	26	14	16	22	17	38	10	24	9
AGTACTGGGTCAATAC	alt_4116_RC	10	63	19	23	64	20	65	14	39	4
TCCGGCAGCGTGTAAT	alt_4116_RC	17	25	24	12	17	17	27	23	32	13
CCGGTACTTTGATAAT	alt_4116_RC	0	3	0	1	6	2	4	1	1	0
TGTCAGATTTTTGTCG	alt_4116_RC	29	42	26	24	28	25	53	25	35	28
GAAGTATTTATGTATT	alt_4116_RC	29	29	24	28	34	15	33	16	34	19
GTTGCATATCCTCTTG	alt_4116_RC	16	25	18	15	32	10	31	20	21	12
TTCCCACTAAGCAGGG	alt_4116_RC	13	19	9	10	28	5	18	10	21	5
GACGGACTCTTATTTC	alt_4116_RC	44	71	56	31	75	51	88	36	81	36
AGGTGCTTGGACTAGG	alt_4116_RC	12	30	16	17	28	4	38	18	43	16
ACTTGTTTACTAGCCG	alt_4116_RC	60	89	58	69	90	35	97	48	99	43
GCTCCTCGGCCACGTA	alt_4116_RC	18	51	36	26	44	17	52	19	63	20
GTAACTCCGCTTGTCG	alt_4116_RC	2	10	0	1	9	1	8	1	13	3
GAATCGGTTGATCGGT	alt_4116_RC	0	0	0	0	0	0	0	0	0	0
CCGCTTGCATTATTTC	alt_4116_RC	1	15	3	0	22	6	14	2	25	1
AGCACTCCGTTATTTC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TTTCTGGTCGTGTTGT	ref_41_missing	63	48	63	55	34	61	41	48	51	49
GGCGGTCCCTACTAGT	ref_41_missing	7	9	9	14	13	8	12	11	11	12
TGGATCGATTGCGTTT	ref_41_missing	0	0	0	0	0	0	0	0	0	0
CGGTGGTTTCGCTCTG	ref_41_missing	24	18	22	31	10	18	17	19	22	13
GTCTGACCACATTGAG	ref_41_missing	14	20	27	19	10	16	16	17	13	16
CCACGTTAACTATTCT	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTTATTTTGACA	ref_41_missing	0	0	0	0	0	0	0	0	0	0
CTTTAGTTTTGCTCTG	ref_41_missing	11	15	24	16	15	18	18	16	16	16
CATGCTTTTACCTGTC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
CTTACCGTACTCCTCT	ref_41_missing	5	9	3	1	9	5	15	2	7	1
TGTTAGCTCGGGCAGG	ref_41_missing	20	14	26	21	10	30	15	22	14	14
GCATGTATACATGACC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TCGCCACGGGGCTGGA	ref_41_missing	17	14	11	10	7	13	4	12	12	7
ATACTTCTGCTCGTCA	ref_41_missing	69	50	110	64	44	69	50	62	50	69
ATACGAATGTTCTTCC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
AACGGTTCTCCTTTAA	ref_41_missing	7	10	12	3	3	0	6	5	6	5
CGTATTTACAGCTGGA	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TAGCTTCATCGCCAAC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
CTTAGACAGGTTTCTT	ref_41_missing	0	0	0	0	0	0	0	0	0	0
CAGATGTTAAAACCTT	ref_41_missing	23	18	25	22	15	26	15	26	15	20
CTGCGCGAGTTGTCTG	ref_41_missing	0	0	0	0	0	0	0	0	0	0
GGTGAGTTATCCCGCT	ref_41_missing	25	19	26	21	18	25	22	24	10	18
CGTAACTGAATTATTT	ref_41_missing	14	12	19	19	17	19	11	15	17	15
CTGTCTACGCCTGGCG	ref_41_missing	5	10	14	16	14	9	13	9	8	9
TCTTCTTACTCGGAGC	ref_41_missing	0	0	0	0	0	0	0	0	0	0
CCAGGTGTCCGTCAAG	ref_41_missing	13	15	13	16	17	11	11	11	20	16
AGGTGGTGTTACCATA	ref_41_missing	20	31	34	38	19	18	24	27	20	28
GATCTTATTTTTGGTT	ref_41_missing	8	4	10	9	10	3	7	10	11	9
TTAAGGCTGTCATGTT	ref_41_missing	0	0	0	0	0	0	0	0	0	0
GGAGGAGAGCCAAGAG	ref_41_missing	0	0	2	0	0	1	0	2	2	1
TATCATTTAACGTTAC	ref_41_missing	59	59	85	68	77	72	77	76	60	84
GTACTTGAGCGCCTTT	ref_41_missing	10	8	11	9	13	13	7	11	9	20
TGTTCGGGCTACGGCC	ref_41_missing	25	21	34	21	22	34	22	30	25	24
AGATGTCTCTTATAGA	ref_41_missing	0	0	0	0	0	0	0	0	0	0
AGCAGGATATGTGAAA	ref_41_missing	8	11	15	6	9	3	10	6	5	8
CTTGGTCACAACTTTG	ref_41_missing	0	0	0	0	0	0	0	0	0	0
TATGAGGCAAGCTGTT	ref_1253_missing	67	40	88	82	49	70	51	67	55	66
CCTGGCCTGACGATGT	ref_1253_missing	10	2	13	6	7	6	8	12	9	11
CCTACGATCAAAACAC	ref_1253_missing	63	89	84	86	80	64	90	77	80	58
GGTTCTATCTTGCAAC	ref_1253_missing	26	8	28	23	9	9	8	16	16	13
CCGTTATTCCGAGATT	ref_1253_missing	2	0	3	4	0	4	0	1	1	1
CTTAACCCGAAAACAA	ref_1253_missing	48	49	54	41	46	39	53	40	48	52
TGGTGACGCTTACTGC	ref_1253_missing	32	20	61	49	26	31	21	44	29	38
GTGAGTTCCCGTTCCG	ref_1253_missing	19	12	18	22	10	18	5	22	12	10
GAGATTGAATGTCAGG	ref_1253_missing	85	77	110	108	47	94	63	111	70	60
GTAGGATTGGATTCCC	ref_1253_missing	131	98	153	121	91	109	77	132	99	92
TCCATCGCGTCTTCGT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TGCGAGGCTAAGCCTG	ref_3676_missing	27	30	39	28	45	33	39	20	38	24
TATATTGAGAATTCTC	ref_3676_missing	0	0	0	0	3	0	1	0	0	0
CATCTTCTCATTATGC	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
CTTGCACTCTACCCCC	ref_3676_missing	16	19	13	6	15	5	25	7	22	10
GACGGCTAGCTAACGT	ref_3676_missing	15	38	31	20	35	20	58	18	47	26
GGTAATCGTTTTGAAT	ref_3676_missing	20	25	23	14	19	17	30	26	27	21
GGATTAGTAGGCATCG	ref_3676_missing	14	39	35	40	43	15	58	23	39	25
TTACTTATTAATAGAC	ref_3676_missing	20	31	25	18	47	9	35	16	36	10
CGGGTTTCCAGAATAC	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
ACATATGCCTATCAGC	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TGGAAACCCCTGGTCT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TCGAGCTAAAACAGTA	ref_3676_missing	5	13	1	4	6	7	11	2	10	4
GCCGCGCTGGCTGTCT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TCGGGGTTTTAAAAGC	ref_3676_missing	4	6	4	1	8	5	6	0	11	8
GATTCGTCCTAGCGGA	ref_3676_missing	7	17	6	11	14	14	17	8	16	9
TATTCCCCTCATTGTT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
GGCTACCACTAACCTA	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
GGCGGGAGTTATGACT	ref_3676_missing	12	11	9	5	16	8	9	21	15	15
TTTACGCGGTGTATCC	ref_3676_missing	5	12	12	10	19	11	17	8	19	12
ATGTGTCATTTATGCT	ref_3676_missing	27	49	25	22	38	28	46	15	56	15
GCTGCGAGTCTAAATT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
CTCACTGCTATTGCTG	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
CATACGAGTTGCTCTT	ref_3676_missing	27	34	43	38	58	46	39	30	47	27
TTTTTATCTTGCATGT	ref_3676_missing	25	28	28	28	50	25	38	21	38	35
GCAGATCAATCAGGTC	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TATGTGAACTTCCAGT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
GATCCGCTTCATGAGG	ref_3676_missing	18	21	19	25	37	15	32	14	24	11
TAAACACGCAGCTAGA	ref_3676_missing	1	14	8	6	5	4	12	13	10	2
CGGATAACTATGGATG	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
CTTTTACTTCCTTTTC	ref_3676_missing	4	3	2	0	2	4	1	0	3	1
CTCGTCTCGTTCGCGC	ref_3676_missing	14	18	24	21	41	11	27	23	26	15
TCAGTCGTTTGCGTGC	ref_3676_missing	7	10	4	5	14	7	12	4	13	3
CCTTCGCACCCCATAG	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TAACCCCGATCTGGTT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
CTGAAAGGCTTCGGAT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
GCGCAGCTACTGGCAA	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TTGCTATAGTCGGTCA	ref_3676_missing	1	4	4	7	5	4	4	1	8	7
GTGAACGGAGTATCCC	ref_3676_missing	0	5	2	1	3	1	0	1	2	3
GGCCTCATGCGATCTG	ref_3676_missing	4	5	4	3	3	1	4	3	7	5
AGTATGTAAGAGTTAA	ref_3676_missing	8	17	6	1	9	10	14	4	22	6
CCCTTCACATAGAAGC	ref_3676_missing	15	25	10	23	28	9	28	6	31	6
GCCAATGCTATAGTTT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
GATGTTTTGAAAATAT	ref_3676_missing	20	19	19	23	27	16	18	6	19	14
ATCGCAGTATAAGCAT	ref_3676_missing	6	5	5	3	4	8	7	3	11	5
CCTTCTGCGGCCGAGT	ref_3676_missing	2	6	2	6	7	4	4	9	8	6
ATCTCCCTTTGGTTTG	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
AGGAACTCGAGATATC	ref_3676_missing	16	12	15	17	12	15	13	9	23	11
GTAAATTGTCATCGGC	ref_3676_missing	12	13	21	5	12	11	26	9	12	5
CTTGGTCATATGGCCG	ref_3676_missing	17	36	14	18	35	8	37	6	40	8
CTGCTTTCCTTCGCGT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
GGCTATTCTTATGAAC	ref_3676_missing	1	9	0	2	2	4	4	2	7	1
GACTTGATTTTCTACC	ref_3676_missing	8	36	21	17	22	9	31	13	30	13
TAGAGGTATCGAACTC	ref_3676_missing	7	23	21	20	16	10	30	6	22	11
CCAGTGCCCGTGCTTT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TCAGTGGCATACCAGC	ref_3676_missing	32	46	47	32	45	37	49	35	59	32
CCTCAATGTCTTGTAC	ref_3676_missing	0	1	0	0	0	0	1	0	0	0
GCCGCGCGGGGGGGCT	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TCCACATGGCTTACGG	ref_3676_missing	27	29	16	20	16	21	29	18	17	15
ACATGCAGGTTGTATT	ref_3676_missing	21	37	25	27	55	37	39	29	44	34
CATCGTTGACCGGTGG	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTCGTTCTTCGT	ref_3676_missing	22	41	29	17	27	20	36	20	24	16
GTCATGCATTGGCATT	ref_3676_missing	5	6	2	3	5	0	6	5	9	2
CTTGAGTATTCCATCG	ref_3676_missing	9	8	17	7	10	11	9	9	11	6
CTAACTAATCCGAATC	ref_3676_missing	1	5	2	1	7	3	4	3	3	7
CACCTTTAGTATTGTC	ref_3676_missing	1	4	7	9	7	3	15	9	9	8
TTCCGAGGACTCTCCG	ref_3676_missing	9	8	9	5	5	8	9	10	16	5
TGCACCTTCTTTATAC	ref_3676_missing	7	9	4	4	6	0	8	3	10	8
ATTCTGCTTACTCTGG	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
GGTCTACGAATTGGCA	ref_3676_missing	0	0	0	0	0	0	0	0	0	0
AGACATAATTGCCTCC	ref_3909_missing	5	8	3	7	15	3	16	3	7	11
CATTGGTGGAGCTTCG	ref_3909_missing	7	14	7	13	13	5	18	7	14	6
TCTATCGTGGCAAAAA	ref_3909_missing	6	14	7	2	9	7	10	4	12	3
GGATTAGTAGTAGACC	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
ACTTAGCCGCCCAGTG	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
ACAGTTGGCTCTACCG	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CGTTGGTAATTATCTG	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
AGGAATGAAAAGTCAC	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
ACGTCTCTGTCTTGGT	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
ATATATTAACATTATA	ref_3909_missing	1	2	2	0	1	1	1	2	0	0
ATCATTTCGCCCACGT	ref_3909_missing	4	3	2	1	5	6	6	3	6	0
CTCTTATTACCATGTT	ref_3909_missing	4	9	1	5	8	5	3	6	10	3
TACTCATTTAATATGT	ref_3909_missing	9	16	21	17	27	20	24	17	25	14
TACATCACATTCAGTG	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CCGTTGATGATACCGC	ref_3909_missing	5	10	6	7	11	12	14	5	14	6
GAAATTTCGTTTGAGG	ref_3909_missing	21	33	24	18	51	21	55	15	36	16
CTGCTAATTACGAATC	ref_3909_missing	6	11	3	5	3	3	6	5	10	4
CCGCCACGTGTCCTCT	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
TGTTCCAAGTTCGTCA	ref_3909_missing	10	6	3	5	10	3	7	4	10	8
TATCACAAATTAATGT	ref_3909_missing	6	8	7	8	12	2	11	5	13	2
TCGAATTATGTTAATT	ref_3909_missing	16	21	19	11	20	15	23	8	26	7
TACTCCGGTACAGTCA	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CGTGCCGGTTCTCCTA	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CTTTGTCCTTTTTAGC	ref_3909_missing	4	9	6	6	7	6	10	3	6	4
GCCGCCATTCCCGACC	ref_3909_missing	4	9	6	4	5	5	2	5	6	2
TATGGTAACTAACTTA	ref_3909_missing	36	56	32	34	63	39	59	33	50	32
GTTTACTATTTATGTT	ref_3909_missing	10	19	14	12	14	16	21	7	12	8
TATATTTCAATCAACA	ref_3909_missing	5	8	5	11	11	3	9	11	14	6
TCACTTGGGTCCGTAA	ref_3909_missing	4	3	4	0	5	2	6	0	2	2
GGGCACAAGCATTATA	ref_3909_missing	1	6	7	4	12	5	13	5	11	3
TAAAATATGGTCACAA	ref_3909_missing	22	32	30	20	30	15	26	20	32	23
GTAGGTTTGATTCCTA	ref_3909_missing	7	22	15	17	16	15	24	15	24	13
CGAGCGTGAGCAGCTC	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
GACTATTGATATCACT	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
ATTGCCGCAAATTGTA	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CTCAAGTCAGTCAAGA	ref_3909_missing	5	16	0	11	14	11	20	7	13	10
TATATAGCTTACTGGA	ref_3909_missing	14	21	9	16	17	6	17	7	21	11
GACCTTATGGAGGACG	ref_3909_missing	4	8	5	2	8	4	10	1	10	5
AATCCATTATTAGGTA	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CGTGTACAAACCGTCG	ref_3909_missing	7	19	12	17	19	12	27	10	22	11
AAATCTTGTGCTGGGA	ref_3909_missing	24	34	30	23	38	29	36	18	36	13
TGAAAAACAATCATAA	ref_3909_missing	9	12	7	16	15	14	12	3	19	6
AAGGTAGGTAAGGCCC	ref_3909_missing	4	3	5	5	4	4	1	3	3	2
TATTTTAATAAGTCTG	ref_3909_missing	4	4	6	4	1	4	2	5	9	5
CCTAAGAAAAAACCTT	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
TGTGTCTGTAGAATTT	ref_3909_missing	4	3	3	8	5	2	7	7	8	2
ACGTATTCGGTTTCTA	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CTATGCATGCTGTTAC	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
TTCACATAAGCCCAAT	ref_3909_missing	0	0	3	1	6	2	4	2	6	3
TATGAATCCTTACAGG	ref_3909_missing	3	10	6	8	15	9	8	5	15	6
CCCCTGATCCTAGTTT	ref_3909_missing	1	1	4	5	5	2	5	2	3	2
TGAACCCATACTCTGA	ref_3909_missing	6	3	6	4	13	6	6	1	9	5
TAGCTCTTGGAATTAG	ref_3909_missing	1	0	0	0	0	1	3	2	5	1
TCGTTACAACAGGGAG	ref_3909_missing	10	5	8	2	9	3	7	5	8	11
GATGACAGTAGGGGGC	ref_3909_missing	12	30	19	10	31	18	27	13	39	18
CTTAACAGATTTTCTG	ref_3909_missing	11	8	13	7	13	11	13	7	17	10
CTCTTGGCGAGTTACT	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CAGTCGTGGAATGCCC	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CTAAAGCTTCCAACTT	ref_3909_missing	14	25	14	15	20	6	15	11	35	6
AGGTGATCGCCACTGA	ref_3909_missing	29	66	36	43	61	51	52	32	85	38
CAATAGCAGCTGGAGT	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
TCGATCTTTTTCACCA	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
ATGCGGGTCATGCTTC	ref_3909_missing	3	12	10	3	12	10	11	8	16	8
CTTCCCAGTTTATCTG	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CCGCTATGCATGAAAC	ref_3909_missing	58	84	71	52	100	57	87	55	88	56
CGCGCACAGGTCAGTC	ref_3909_missing	2	4	6	4	8	1	5	3	7	4
ATCCATCTTTGTGCCT	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
AGACGTGAGTTTCGTT	ref_3909_missing	6	14	6	3	6	6	6	6	7	1
ACAACCCTGGGAACAC	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
CCCCGGCTCGGTACCC	ref_3909_missing	0	0	0	0	0	0	0	0	0	0
TATTGTGATACAGCGA	ref_3909_missing	7	12	13	2	21	7	15	11	12	5
GTGTTGGAGACTAGCT	ref_3909_missing	12	17	6	12	8	4	12	7	18	6
GGAAAGTCCGTGTTCT	ref_3434_missing	2	2	3	2	3	1	6	1	2	1
GATATTGCTGAGTAGC	alt_3434_missing	4	6	1	1	8	0	9	5	6	7
GCATGCCAGGAAATAA	ref_3434_missing	1	1	2	5	5	3	2	1	1	2
AGGGGGAGGTTCTTAG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
CAGTTCATAGGCATTA	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
TTTCTTCTCGCCTTCC	alt_3434_missing	9	9	11	17	15	6	11	11	18	3
GGGCATGATTCAAGAC	ref_3434_missing	3	1	2	1	1	2	2	3	2	0
CTTTATGATTAGTACG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
GACCCGAGACGAGGCC	ref_3434_missing	0	0	2	0	2	1	0	0	0	1
AGTAGATTACTGGGGG	ref_3434_missing	0	0	1	0	0	0	0	1	0	0
GATACACAGTACGATT	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
TTAATCGCGCTTGCCG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
ATGTGGAGTCCACTTT	ref_3434_missing	2	4	3	3	5	3	10	5	10	4
TTCTGGCTCCGGGATG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
ATATCGTTTAGCTCCT	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
CCAGTGTGGAGTATGT	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
GTCAACCCAGAGCTTT	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
AATCAAAAACCCATCC	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
GTTGTTCGAATAGGCC	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
GCCGCTTTGACGCTCT	ref_3434_missing	4	2	4	2	6	2	3	4	6	1
ACCTTCGCGTTTGGAT	ref_3434_missing	5	9	3	5	8	4	10	2	12	8
TAAGTTGTGTCTTCGG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
GGCCGCGCCAGGCCTA	ref_3434_missing	9	4	5	9	10	8	10	5	19	5
TACGCGACCTTTGCGA	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
GCATTACGTTTGCATG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
TCTTCTCGAACCCTAC	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
TGTACATATGTCATCT	ref_3434_missing	25	33	30	10	19	13	38	13	38	12
CGCAACCCTTGGATTA	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
AGCTCGGTAGCATTCG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
AATCCGTGCTTTATGC	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
CGGTTCAGTGCTGTCA	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
CTATTGCCCTACAAGG	ref_3434_missing	0	0	0	0	0	0	0	0	0	0
CAAGTTAATGGGGTCT	ref_45_missing	71	112	90	71	124	64	135	71	119	81
GCGGTCTAATGTTAGA	ref_45_missing	13	22	10	15	19	14	10	12	14	10
TCTGCAGTTTGATTTG	ref_45_missing	41	57	33	34	68	26	51	22	52	35
TGGATGTGGTCTGTGA	ref_45_missing	54	116	76	72	112	58	104	73	98	56
TCGTGTCCATGACACT	ref_45_missing	24	18	26	23	36	22	31	21	31	19
GCTTAGTTTTGGGTCG	ref_45_missing	19	22	17	14	31	15	22	20	29	17
TCTCTTATTAATACTA	ref_45_missing	0	0	0	0	0	0	0	0	0	0
GGTAGCGGGCCGTCTG	ref_45_missing	36	59	38	35	51	43	38	31	57	28
CGTATTATGGTCGGAA	ref_45_missing	8	7	10	14	7	10	5	4	5	10
TCAGCGGTGCTAGATT	ref_45_missing	28	45	26	18	54	26	46	25	66	23
TCGCTGTCGCATTTCG	ref_45_missing	83	132	115	95	152	104	130	68	140	103
CCACACACTATGCCCC	ref_45_missing	17	68	36	30	86	18	74	32	63	26
CAAGTTAGTGATGCAA	ref_45_missing	0	0	0	0	0	0	0	0	0	0
GATAGGATTCTGCAGT	ref_45_missing	19	18	33	29	37	23	37	25	43	10
TTTTCCGGCGCTCTAG	ref_45_missing	33	35	48	51	77	33	76	31	60	41
TAGTGACAGCAATCTG	ref_45_missing	18	24	20	12	33	18	19	19	20	14
CGGTCAATTCTTGGGG	ref_45_missing	25	31	34	29	25	38	38	18	35	20
AGACTCGCGATAACCG	ref_45_missing	6	14	14	3	7	7	11	9	10	6
CACTGTGTGCCTACGC	ref_45_missing	18	55	47	26	44	21	40	19	63	27
ATTACGTATCTTATAG	ref_45_missing	0	0	0	0	0	0	0	0	0	0
ACTGTCAAGGTTCGGC	ref_45_missing	0	0	0	0	0	0	0	0	0	0
GTATTAGGTGGGGCTG	ref_45_missing	23	34	39	26	42	25	37	20	36	22
GTCCATTGCTCCATAT	ref_45_missing	39	64	49	29	74	47	62	45	74	26
CAGTAGGTGTGACTCG	ref_45_missing	48	85	61	43	83	36	70	44	91	37
ATTGTGGAAAATGTCA	ref_45_missing	47	59	51	49	70	29	52	39	91	44
TCGATATCAGTGTGTC	ref_45_missing	0	0	0	0	0	0	0	0	0	0
TGTCCCGGAGTGGCCG	ref_45_missing	0	0	0	0	0	0	0	0	0	0
TGTTATAGGTCGAGTA	ref_45_missing	0	0	0	0	0	0	0	0	0	0
GAACAACTAAATATGG	ref_45_missing	15	14	10	14	24	10	16	8	20	7
AATATTATTTTAACCG	ref_45_missing	13	19	27	20	22	20	19	11	35	11
TGGTTGTCGGGAACAA	ref_45_missing	9	15	19	12	16	12	18	9	19	8
TGGGCGTTGTGAAACA	ref_45_missing	25	47	44	36	41	36	44	30	52	33
TCTGTCCACGCACGTA	ref_45_missing	13	9	13	13	11	12	16	11	17	14
TTACTGATTCTACGAA	ref_45_missing	4	6	3	8	7	7	7	2	4	2
CTGGCGCAGAGAATTA	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
TATTGGATCACTAATA	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
TCCATTATGCCGTACC	alt_4170_reverse	1	3	1	0	1	3	0	1	2	1
GTATCTTGTAGTAAGA	alt_4170_reverse	28	42	39	37	56	35	40	29	49	35
AGAGAATTTGCGGTTT	alt_4170_reverse	69	97	110	85	99	77	127	81	129	75
CACGAGACTGATGCTG	alt_4170_reverse	38	42	48	29	45	52	40	37	49	32
TCGAAAGATTTAGGCG	alt_4170_reverse	13	20	9	15	21	8	24	5	17	14
TCACGTAACCTAACTT	alt_4170_reverse	19	15	14	19	23	11	27	15	21	21
AGAAAACGCACTGTGG	alt_4170_reverse	5	12	9	13	8	10	12	9	6	9
TATACTTACCAGCTAC	alt_4170_reverse	4	38	5	6	38	5	57	4	33	3
TCCTTGCTCGACAGTC	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
GCCTTAACGTATCCGA	alt_4170_reverse	30	47	35	33	53	32	49	35	54	30
TAATCGCTGCTATACA	alt_4170_reverse	39	38	49	25	55	30	43	30	42	29
AGTCGGCATTCTGTTG	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
TCCCGGTAGGGCTTAT	alt_4170_reverse	12	16	9	9	28	13	9	16	14	5
ATCTTTTGGCTTTTTT	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
GGTCACGCAGGCGCTT	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
ATCAATCTAATGCCCT	alt_4170_reverse	0	3	6	4	8	4	9	5	8	5
TCGTTGCCACGCTACG	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
ATAGAGCAATATCAGG	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
CAATGTATACTGAACC	alt_4170_reverse	177	220	196	151	236	165	228	169	258	141
GTTTAGGCCCACTCTA	alt_4170_reverse	6	15	18	21	21	17	19	10	19	7
CCGTCTTTGTTCGACT	alt_4170_reverse	25	38	18	24	43	15	50	8	59	7
CATCCCATAGGGTTTA	alt_4170_reverse	66	105	69	65	92	67	107	63	117	53
GGGGAAATGTGTGTCT	alt_4170_reverse	32	56	38	39	50	37	53	37	50	32
GGTGGGTAGTCGGAGC	alt_4170_reverse	4	8	5	4	4	4	5	3	3	1
CTCTCTTCGGAGGTCA	alt_4170_reverse	16	16	15	12	29	20	9	12	17	18
TTATTGGGTTTTGAGC	alt_4170_reverse	22	27	29	10	23	19	17	14	23	17
ATGTCACTAGGCTTCC	alt_4170_reverse	8	4	4	8	7	2	17	1	6	3
TATAATCGATACCTCA	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
TTTTATCTCCCGATAC	alt_4170_reverse	49	66	47	61	79	54	77	46	94	41
CGGCCTATTGCGAACA	alt_4170_reverse	23	29	20	20	21	25	25	24	39	28
CTCCGGTAACGCAAAG	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
CGTAATTTTATTATCT	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
TCACCTGTCGCGTGCT	alt_4170_reverse	15	22	14	12	24	11	31	9	35	13
TTCGACTCAGCGTTTT	alt_4170_reverse	30	45	38	38	49	29	42	33	54	28
ATTTTTCCTTTCCCGT	alt_4170_reverse	3	1	5	6	7	4	2	4	4	7
TGGCATTCTAGTTCAC	alt_4170_reverse	50	92	59	52	79	61	73	59	95	52
GCCTCTAAGATTAGAT	alt_4170_reverse	19	21	22	18	22	17	25	12	25	11
TGGTTACGGGATACTT	alt_4170_reverse	10	25	15	15	16	22	29	24	35	11
CCCAGCCAGCTGTACG	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
CGGCCTATTGCGAACC	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
ACCCCAATTGCACAGC	alt_4170_reverse	7	8	20	7	13	11	14	5	16	12
CTTATACGGTCGAGCT	alt_4170_reverse	8	14	20	12	17	22	17	18	5	8
AGTGGATGTTCCCCTC	alt_4170_reverse	13	22	14	7	31	17	26	10	34	10
TTTGATCGTGGTTTTG	alt_4170_reverse	50	63	64	60	70	39	76	49	61	44
ATTTGACGCACTTGTC	alt_4170_reverse	0	0	0	0	0	0	0	0	0	0
GAAGCTAGTGTTCATA	alt_4170_reverse	52	63	50	45	66	45	68	31	75	36
ATCGAGGGGTCAAAAG	alt_4170_reverse	62	86	90	61	78	65	98	55	105	56
ATGAAGCTGGGAGTTT	alt_4170_reverse	13	29	15	14	27	13	30	11	26	10
ATTCTCCTGATACGCA	alt_4170_reverse	50	76	66	64	68	34	89	52	76	41
GACATTCCTTCTGCTA	alt_4170_reverse	37	45	34	30	42	41	56	38	48	21
TACTCACCACATCAGT	alt_4170_reverse	3	8	12	6	19	4	23	4	10	8
AGATCTGAGGAGACTT	alt_4170_reverse	9	8	8	9	15	4	12	12	11	2
GGTTTGGTGCACGTTC	alt_4170_reverse	113	138	129	97	137	86	178	113	164	86
TGTAGAGCCGTATTGT	alt_4170_reverse	41	63	41	51	80	40	62	40	93	41
TAGCCGTCCGCATGGC	alt_4170_reverse	61	52	57	49	68	49	64	62	48	35
CCCGCTATTTTTATTA	alt_4170_reverse	17	28	10	9	7	10	15	1	15	8
CCAGAGTCATTTTTGA	alt_4170_reverse	50	66	50	46	55	38	67	47	65	48
CCTATCGTCGTGCGTA	alt_4170_reverse	3	4	6	4	5	3	6	7	4	2
ATGCTCCGGACTAATT	alt_4170_reverse	111	141	122	97	139	93	120	84	137	87
TGGCACTGCACAAAGT	alt_4170_reverse	15	24	33	15	24	17	23	12	19	22
ACTCGTTCATTATGGC	alt_4170_reverse	17	27	27	30	38	30	36	23	49	18
GTTGATACACAAGCTA	alt_4170_reverse	2	0	1	0	4	1	0	1	2	0
CGACAGATTTCACTTG	alt_4170_reverse	71	86	62	62	86	51	118	41	108	61
AGATTTTTAGTCAGAG	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
AATCGCGTTCGTTAAT	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
AGTATAAAATTACTTA	ref_223_fdr	53	39	58	59	35	53	45	48	23	46
GCACACAACATCCGGA	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTACCTTCTACGC	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
AAACTATGTGATCGTT	ref_223_fdr	368	189	421	339	170	321	210	293	174	265
GGGATGGTTTCATGCT	ref_223_fdr	100	81	126	118	66	111	67	104	93	95
GTGTCGGAACGACTCA	ref_223_fdr	44	70	49	28	62	29	78	33	63	26
TGTGACCGCTGGGTAC	ref_223_fdr	43	39	64	60	26	38	41	55	54	54
CTTGACTCCGAGATGT	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
GCGTATAATGGTATAG	ref_223_fdr	21	15	21	10	15	25	14	17	11	25
CCGTATGGCGGATTTC	ref_223_fdr	100	58	142	114	62	109	44	78	63	105
GACTGCCCCTGTGTAA	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGCAGTTCACGTT	ref_223_fdr	73	27	75	66	31	69	41	45	44	47
AAAGTGTTGTACCGCC	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
CATACATTGTCTAAGT	ref_223_fdr	144	106	164	170	95	137	118	144	130	126
ACTACCGCAAGCCGTT	ref_223_fdr	30	38	59	62	32	54	28	47	38	33
GTCTTTATTGTGTTGA	ref_223_fdr	24	16	31	26	21	26	22	21	23	21
GCAGCTGCTCTCGGCC	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
ACGGACAAACCGTCAT	ref_223_fdr	19	14	31	30	15	15	18	23	14	25
CATCAATACCTTCCTC	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
CTCCTTTAGGTAGATT	ref_223_fdr	28	20	47	39	20	29	20	30	19	25
AGCAGATGATTGTGCG	ref_223_fdr	219	157	265	231	148	197	163	210	152	201
TTAGTCGATTGCCCCA	ref_223_fdr	11	4	10	9	13	9	11	11	6	8
TTAATCTACTTCGCTT	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
TATAGCTGTCTTTGCT	ref_223_fdr	6	6	8	11	6	6	8	13	7	12
CCATCATGTGATTCCC	ref_223_fdr	17	7	30	24	10	11	18	20	16	13
CTAAGGTCATAGGACC	ref_223_fdr	10	3	3	9	2	11	5	6	6	4
TTCTTGCATGTGAAAG	ref_223_fdr	92	95	109	85	84	102	108	85	98	64
CGTATTATCTGGGATG	ref_223_fdr	9	8	9	14	7	6	4	9	5	7
TATTAAGGGATTACCA	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
GCCGATGTAGGTCTTG	ref_223_fdr	70	40	70	59	32	67	29	42	42	47
TGTTCGTTGTTTTGTG	ref_223_fdr	74	42	87	73	39	48	42	59	45	65
CTGTCTTGGACTAGGC	ref_223_fdr	135	70	162	122	70	128	90	123	91	103
ACTGCGTAAATCTGTG	ref_223_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGCTAATGCCTGT	ref_223_fdr	85	38	100	69	51	75	45	64	45	60
TTGAATTAGTTCGGTT	ref_223_fdr	300	190	409	315	191	282	172	254	194	256
CGCTTGGGCGATATAC	ref_223_fdr	197	129	232	223	127	162	125	207	140	201
CTGCCAGCTTGCTAGT	ref_223_fdr	124	61	159	138	72	125	72	141	87	101
TGTGTGACCTCATCTT	ref_305_missing	81	86	88	86	93	72	80	65	89	77
TGATTCCCGCGTACGT	ref_305_missing	38	50	38	24	51	39	58	37	55	34
TTTCAGTTAGTCTAGT	ref_305_missing	29	34	22	17	29	12	25	8	33	9
CATCCTTGTAGACTGG	ref_305_missing	10	18	12	6	24	8	21	13	22	13
ACATGGGAAGTTCCCC	ref_305_missing	31	39	48	45	42	39	48	43	48	34
CTTCATTTCGGGTACA	ref_305_missing	2	3	2	3	1	0	1	3	1	0
GAGCCCCCCTGCTGAT	ref_305_missing	31	33	31	31	41	41	30	28	36	25
AATGGCTTGTCTCGCC	ref_305_missing	49	62	66	67	73	58	72	56	84	66
TCTGGAAATACATTAA	ref_305_missing	71	91	86	46	74	62	94	70	102	66
ATGTTCGCCATTTATC	ref_305_missing	24	26	31	35	35	27	34	24	37	24
CTGATGAACCCAGTTA	ref_305_missing	117	115	166	92	144	114	154	107	141	102
CTTTACATGTGCAATC	ref_305_missing	0	0	0	0	0	0	0	0	0	0
GGTTCGGGATCCTGTT	ref_305_missing	5	4	11	6	7	4	4	1	9	4
AAGATGATTCCGGTCT	ref_305_missing	0	1	1	1	8	2	2	5	2	0
ATATTTATATTGAATA	ref_305_missing	0	0	0	0	0	0	0	0	0	0
GGGTGTTCATCACGAG	ref_305_missing	0	0	0	0	0	0	0	0	0	0
ATTTCGGTACTCATTG	ref_305_missing	16	36	21	31	40	26	43	36	40	29
TGGGAGATGGAGAGAA	ref_305_missing	2	6	12	12	16	5	13	7	5	6
TGTCACTTCTTGCGTA	ref_305_missing	100	95	103	64	126	81	129	65	138	74
CAGTTCGCGCCTTAGG	ref_4264_upstream	107	64	128	108	61	128	63	94	73	111
TCTGATTAACGTAGTC	ref_4264_upstream	113	80	135	109	83	123	57	106	78	102
TCTGTGTACTACTCCG	ref_4264_upstream	30	31	20	29	29	25	37	20	37	26
TTCCGTAGACTTGCCT	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
GATACTTACCCCTCTC	ref_4264_upstream	8	28	12	8	12	10	24	7	33	2
ACTTACTGCACTACAA	ref_4264_upstream	11	6	4	5	3	5	3	8	6	4
TCGGTGCAAAAATTGA	ref_4264_upstream	55	43	59	64	43	56	39	65	40	59
GCGGGTTCTCCTTGGT	ref_4264_upstream	98	71	113	125	96	87	65	101	89	96
AGCGCAGGAGAGCGCT	ref_4264_upstream	90	57	110	95	49	75	64	73	61	95
CTCGAATCGTTTTTTC	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
GGTACACTTTGCACCA	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
TTGACTTTTGCTTTAG	ref_4264_upstream	38	23	52	41	42	54	50	40	31	44
GTAAAGAATCGGTCTG	ref_4264_upstream	29	25	43	33	9	28	24	19	17	25
CTCGCCGTACCTTCTA	ref_4264_upstream	15	15	22	18	5	9	10	6	4	13
CCCTGCCCCACGTCTG	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAGGCCACCAGTT	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
AACAAGCGATGTTTTG	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
GGTCGGTCTCCCGCAC	ref_4264_upstream	8	19	20	15	12	18	12	9	8	12
TCGCGCCGTCATACAT	ref_4264_upstream	42	25	30	40	18	45	28	26	20	21
GTCGGACCGTTCCTTG	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
GGTGCTTTCTCGGCCT	ref_4264_upstream	21	16	29	28	18	36	15	29	9	14
TTTGGGATGGTTCTAA	ref_4264_upstream	20	20	13	25	7	22	12	11	24	17
GTTTGCCTGGTGATTC	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
CGGATTGACTTTCGAT	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
GCTTTAATACGAATTC	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
CCGGCCGTAGAGCAGC	ref_4264_upstream	55	51	56	54	55	48	52	51	61	56
TGGCCGCTTTCGTAGC	ref_4264_upstream	19	11	15	14	10	16	15	23	10	11
TCATCATTCAGGAGAT	ref_4264_upstream	60	25	74	62	39	51	30	56	32	60
GGTACCCCTACAGAAG	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
TCGTCCCGTATCCGTA	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
TTGGGCGAAGGTATCA	ref_4264_upstream	12	7	15	7	5	12	13	11	6	11
CAGCTAAGTGCGCAAT	ref_4264_upstream	7	3	12	6	8	15	5	15	4	7
GCTTTCATTAATATCC	ref_4264_upstream	43	30	53	62	26	45	25	44	45	47
AATCGAATGGCTTGTC	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
CGGCCGGAGGTGCGCA	ref_4264_upstream	18	10	26	21	22	10	9	20	14	24
CAGCCCTGATACGAAC	ref_4264_upstream	99	67	129	104	65	113	69	89	77	101
ATGGTTAACCACGCAG	ref_4264_upstream	0	0	0	0	0	0	0	0	0	0
ACATTCTCGCAAAGGT	ref_4264_upstream	81	54	105	59	57	91	40	71	55	85
CGGTGCGCACGTCGCT	ref_4264_upstream	44	36	53	45	30	61	34	41	23	55
CGTATTCAAACGCAGT	alt_5794_new	1	1	0	1	1	0	2	2	0	3
TATGTCCTCAAGCTTT	alt_5794_new	0	0	0	0	0	0	0	0	0	0
CAGTGCGTAGATACCG	alt_5794_new	10	10	16	5	7	10	15	5	8	7
GTATCAGACTGTGCTA	alt_5794_new	58	87	64	56	79	59	81	58	89	43
TTGAGGACTAACCGCG	alt_5794_new	0	0	0	0	0	0	0	0	0	0
GACGGAGTATTATTTT	alt_5794_new	39	41	43	49	53	46	46	34	49	47
TTCTAGTCACAGTATA	alt_5794_new	3	4	6	3	9	4	6	3	16	3
CTAAGAATCAGCGTTT	alt_5794_new	6	18	13	11	6	8	5	6	5	6
GTATATGTTGATTCAG	alt_5794_new	23	33	35	26	35	32	48	27	48	32
AAAGGGTCGAGTAGGA	alt_5794_new	19	25	20	25	20	21	28	15	34	16
AAGGAGCGTCCGTTCA	alt_5794_new	26	46	45	28	49	34	54	30	53	17
CCCAATCGTTTAACGA	alt_5794_new	6	10	7	13	14	8	15	4	19	10
CATATATGAACTATTA	alt_5794_new	0	0	0	0	0	0	0	0	0	0
CCGATTGGCCACAGTT	alt_5794_new	16	11	12	8	20	7	16	15	21	13
CACGATGTTTGTGTCT	alt_5794_new	72	108	77	72	116	62	104	61	129	59
CGAGTAATGAACCGGC	alt_5794_new	48	54	49	21	70	24	66	39	37	33
AGTTCAATGACTGATA	alt_5794_new	0	0	0	0	0	0	0	0	0	0
CCTCTTTGATTCGTTT	alt_5794_new	0	0	0	0	0	0	0	0	0	0
GCATTCATAAGCGAGT	alt_5794_new	100	105	93	77	124	73	128	83	108	63
CATTCAACCTCCTTAG	alt_5794_new	0	0	0	0	0	0	0	0	0	0
CGTCCTGTAACGTGCG	alt_5794_new	11	19	21	21	31	13	27	19	31	18
ATAAAACCGTTCGAGC	alt_5794_new	12	14	20	12	22	9	16	12	20	11
CAGCACAGAGTTATCA	alt_5794_new	0	0	0	0	0	0	1	0	0	0
GCTCGTGGGATCACTC	alt_5794_new	69	73	82	59	79	49	61	47	78	61
AACCCAGTCCCAATAT	alt_5794_new	48	41	49	38	54	42	64	42	62	35
CGGACCATGGGGGCGA	alt_5794_new	16	6	25	11	12	5	19	7	19	12
CTCCCGCTTTCCTTTC	alt_5794_new	30	66	33	47	87	40	69	48	76	36
TCGTAGTATAACGTGC	alt_5794_new	5	5	8	9	7	13	7	5	5	8
TTTCGTCAAGCCTAAT	alt_5794_new	0	0	0	0	0	0	0	0	0	0
AAAGTTGAGGGCGCAA	alt_5794_new	41	57	50	35	73	42	58	47	52	36
GAGATTAGCATGCGTG	alt_5794_new	60	72	68	64	81	44	77	53	106	70
TCGGGACCGTTAACTG	alt_5794_new	3	15	9	5	13	2	13	5	19	5
TTCCGCGTCGAGGTTT	alt_5794_new	43	84	47	47	82	67	69	43	76	46
TCGTACACTGTCATCT	alt_5794_new	50	52	42	52	74	44	69	31	77	36
GAACCGGCCAGATAAC	alt_5794_new	35	43	32	26	70	23	54	29	41	24
AGAGCGTATCTGATTC	alt_5794_new	0	0	0	0	0	0	0	0	0	0
AGGGGCCGCCAAGTTT	alt_5794_new	12	16	12	11	10	4	18	7	13	14
TACTAGCAGTCCCCGG	ref_6039_new	32	52	31	35	52	29	52	31	46	26
GACGTATGATGTATTT	ref_6039_new	32	40	27	23	50	23	43	26	38	20
CCCGTCAATTATGTTG	ref_6039_new	0	0	0	0	0	0	1	0	0	0
CGTCCTATCGCTCTTC	ref_6039_new	172	178	179	163	173	151	195	173	182	144
ACGAAGACATACCCCT	alt_6039_new	62	66	59	44	89	56	97	58	87	73
TTCTCGCTAATTATGT	ref_6039_new	45	62	65	46	56	55	62	43	53	45
TCCTGCTTGGGCCACA	ref_6039_new	9	18	14	16	27	9	19	11	22	10
AGTCCGACGATACAGT	ref_6039_new	27	38	33	22	25	29	38	36	47	25
ACGTGAGATCATTATG	ref_6039_new	35	58	39	49	60	38	62	53	69	42
CTCAAATTTCCCCGTT	ref_6039_new	2	8	2	3	8	5	6	3	6	3
ATACTTTTAACATGTC	ref_6039_new	5	5	2	9	6	7	8	6	7	3
CACCCCTCAGGATTAG	ref_6039_new	0	0	0	0	0	0	0	0	0	0
AAGGCTTTCAGCAACT	ref_6039_new	14	21	11	8	21	18	17	6	16	12
GTAGCTGCCATTCAGC	ref_6039_new	0	0	0	0	0	0	0	0	0	0
ACGAGAATTTCCAAGC	ref_6039_new	128	134	114	139	120	144	155	123	172	115
CGGCGGCATCGAAGGC	ref_6039_new	52	47	43	41	45	41	40	37	26	34
GTACGTGAATTTGGGA	ref_6039_new	58	84	68	58	70	63	111	54	84	46
TTTATAGCTGTATTAT	ref_6039_new	11	10	14	10	11	5	13	10	9	6
AATAGTTCTACCCTAA	ref_6039_new	80	85	83	78	73	82	107	62	127	71
AGCATTATGGGCCTTC	ref_6039_new	35	46	45	26	28	33	45	42	43	24
GTGAGTGCGAAGAACT	ref_6039_new	114	132	141	120	117	122	114	119	148	106
GCACAAGTACCTTCAA	ref_6039_new	0	0	0	0	0	0	0	0	0	0
GATGACGAGATCCCCT	alt_6039_new	133	136	152	131	154	139	156	108	166	150
GCGACCACCCGGGGCA	ref_6039_new	122	134	129	137	135	113	123	125	127	108
GGCCGCCCCAGCACCT	alt_6039_new	118	140	151	109	156	132	163	106	147	95
ATTGATTAGTCGTTCC	ref_6039_new	0	0	0	0	0	0	0	0	0	0
TTTGAAGTACGGTCCG	ref_6039_new	149	241	235	207	295	178	267	158	270	182
TCTCCTTATCGTTTTA	ref_6039_new	80	105	115	64	94	77	104	76	100	61
TGTTGGTCGGCTCTAC	ref_6039_new	53	55	55	42	62	44	67	36	77	33
CGTTCGGTTTATTAAC	ref_6039_new	168	203	176	183	208	149	227	131	192	135
CTGTATATTGGGTCCC	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
GAGTGCGGATGGCATC	alt_1261_RC	30	17	31	36	30	20	25	19	17	19
GACAACGGCGTTCGTT	alt_1261_RC	14	15	13	4	18	13	19	15	13	15
CTCAAGCTATAAACCG	alt_1261_RC	47	44	46	48	39	41	43	30	49	28
AGACCCCAACGCCGGA	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
CCCCGGTGTTCTCATT	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
GGGATAGACATTATGG	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
TTCTTATCGCGTTAAC	alt_1261_RC	146	218	146	115	184	122	195	129	223	131
GTACGCTAGCCTCCGA	alt_1261_RC	80	116	118	90	103	73	95	77	102	73
TCCGCGCTGAGTATAC	alt_1261_RC	43	63	63	41	44	45	53	58	63	49
GAACCTAGGCACAAAT	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
CAAATATATTCATATT	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
GGCGTCTTTCTCGTGA	alt_1261_RC	47	75	69	63	77	57	67	61	67	60
TGCCCTCACAGTCTTA	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
CTAGGGTACTTGATCT	alt_1261_RC	13	31	12	21	31	16	34	20	32	19
TTTTAGGTTTGGTCAC	alt_1261_RC	20	21	21	19	20	15	9	18	16	11
GTTTTCTTTATCAGCG	alt_1261_RC	18	29	34	18	31	18	19	19	21	17
ATCGCATAATGTTGTG	alt_1261_RC	51	76	79	69	74	44	60	64	78	57
TCTTAAAGATCATGGC	alt_1261_RC	36	40	58	31	44	42	50	28	45	37
GCGAGTCAGTCGCTGC	alt_1261_RC	0	0	0	0	0	0	0	0	0	0
ACCAGTCGCATAGTGT	alt_1261_RC	10	59	17	14	46	4	42	11	62	14
CAGCGCACCGGGTGCT	alt_1261_RC	30	40	28	36	27	39	36	30	48	23
ATCTAGAGATGAAGGT	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
GTCCCCATAGTCTTCA	alt_2432_missing	4	10	6	2	7	8	10	5	9	2
ACATTGGTACCGACGA	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
GATTGCTTGAATTGGA	alt_2432_missing	13	41	17	12	41	18	46	17	40	23
ACATTAGTAAATTAAA	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
GGTACAGGCCTCTTAT	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
TCTCATCGATACGCCG	alt_2432_missing	49	85	59	51	73	38	86	58	90	53
TTGGTAATCTGACTGT	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
GCACTAAGGAGAAGCT	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
TCGCTTTGTCTGTTAC	alt_2432_missing	7	34	10	9	25	12	31	12	27	11
GGCGCGCTAGGCTTTG	alt_2432_missing	14	23	11	6	22	8	28	17	15	7
GGCCGCCTTTTTGAAG	alt_2432_missing	3	7	2	2	10	3	15	3	10	2
GTGTTGCGTCTTTTAT	alt_2432_missing	5	14	4	4	18	6	11	2	13	6
CCTCCGTGAAAGCGCA	alt_2432_missing	11	13	7	11	18	8	17	5	24	2
ATGATGCTATCGGGGA	alt_2432_missing	123	241	129	136	220	120	206	117	243	99
GAAGTCGTCATATTCC	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
TGCCTATATTTTTTTA	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
GAAATATCCTCTCGAC	alt_2432_missing	42	74	53	43	90	37	73	39	86	42
CGTACATTCTGCACTT	alt_2432_missing	24	54	44	23	50	29	60	15	43	15
TACTTAGCACCATAGC	alt_2432_missing	5	7	5	4	9	2	18	3	13	3
TAAGTAGCGTCTCTAT	alt_2432_missing	26	32	20	26	34	19	32	19	34	10
ATGGAATCGCATACTT	alt_2432_missing	0	0	0	0	0	0	0	0	0	0
CTGCCCTTCATTCCGA	alt_2432_missing	6	16	5	2	19	9	20	8	15	6
GGTTTTAATCACCTAT	alt_2433_missing	10	30	12	18	24	13	13	10	33	8
TTCGCATGCCTAAGAT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
AGTGAGGCGTCTCAGA	alt_2433_missing	7	18	14	5	16	16	20	11	22	10
GCCCTGTAATAGCGGT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
TCGGTAATGGAAGTTT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
GGATGCTCAACAGAGG	alt_2433_missing	3	4	3	1	5	0	5	3	5	1
GCCGAGAGCATATGTG	alt_2433_missing	2	15	8	5	7	6	15	5	20	2
TACTCTTCATACCTAC	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
CGCTAACTATAGCCGA	alt_2433_missing	9	20	10	9	18	5	26	3	19	15
GTCAAGTACCCCGCAT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
CTAAATACCTCGGCAC	alt_2433_missing	1	1	3	0	4	0	4	1	3	0
CTAACGGTCAGTAAAC	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
CTGTCAGGTACTTGAT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
ATTAGATCTGCGTTAG	alt_2433_missing	110	264	112	103	241	133	258	89	295	101
GGATTTTTCTTTCTCG	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
CTAGACCATTTTCAGC	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
TTTGAGAATTTTTGGT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
TGACGGCGCGGCCTTG	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
TAGATGCTGTCGAGAA	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
GTATCAGGTTTTCCCG	ref_2433_missing	26	56	35	23	82	17	67	31	59	36
TGTCAATACGAAGCTG	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
GTTTTGTGTCTAGATC	alt_2433_missing	12	27	16	13	25	10	34	14	27	12
AGTTACGCCTTATGTT	alt_2433_missing	13	19	22	7	20	12	19	9	25	8
GAACCACCCAAGAATG	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
CTCCAAGTCCCTGGTA	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
AGCGGGTCAGATTCGC	alt_2433_missing	20	33	26	11	29	17	31	15	28	8
TAACATCATGGTCCTT	alt_2433_missing	2	5	3	3	8	4	14	6	9	4
GCTACCAGTCTAACGC	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
ATCGCGGTTCCTATCC	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
TAGGTCTAGATTCAAT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
CATCGTCAATCGCTAT	alt_2433_missing	0	0	0	0	0	0	0	0	0	0
ACCATATTCCCCGACA	alt_5315_missing	51	64	54	51	53	52	58	59	56	54
GCTCGTCATATTCTTT	alt_5315_missing	0	0	0	0	0	0	0	0	0	0
GTACACCCTTTGGTAG	ref_5315_missing	15	53	18	17	51	20	47	18	43	19
ACGAAGTATCCAACTG	alt_5315_missing	50	52	69	48	52	52	61	53	58	44
CGTACCACAGATATTG	alt_5315_missing	28	43	31	17	36	29	26	33	27	24
TATTACCCCTGATGTC	alt_5315_missing	156	158	189	138	175	127	146	148	157	134
GGGAGACGAGTGAGGC	alt_5315_missing	64	59	70	44	66	52	57	45	56	56
ATCAGACAGGTCTCAG	alt_5315_missing	59	59	64	51	77	59	70	70	67	67
GGCGACTGGCTAGCAT	alt_5315_missing	16	11	20	21	11	11	12	16	5	18
AGTTTTCTTGATGCGC	alt_5315_missing	43	27	48	43	44	43	22	52	52	41
TAGGCCGCCGCCTTTA	alt_5315_missing	41	27	54	49	39	36	40	39	40	40
TCGCAGGTATTTTCGC	alt_5315_missing	24	25	33	16	23	18	21	16	21	21
TGAATAGATGAGGGAA	alt_5315_missing	0	0	0	0	0	0	0	0	0	0
TGTTCTGATGTATTGG	alt_5315_missing	2	1	4	5	4	3	3	2	4	3
TCTGCGCAGCGTTGCC	alt_5315_missing	23	32	35	30	29	39	28	25	24	33
CTGCTCAATTCGGCAG	alt_5315_missing	0	0	0	0	0	0	0	0	0	0
GATAAGGTATATAGTG	alt_5315_missing	0	0	0	0	0	0	0	0	0	0
CCAGTAACCCCAGAGA	alt_5315_missing	76	65	105	89	84	94	111	70	78	76
TTCTCAGACCAAGTAA	alt_5315_missing	0	0	0	0	0	0	0	0	0	0
TCAGAGAGGAGGAGAG	alt_5315_missing	10	8	12	5	7	9	3	4	5	7
CGTGTTTCCCGGACTG	alt_5315_missing	3	2	2	7	6	6	10	15	3	7
CGTTTACCTTGGGTGG	ref_3356_RC	36	23	39	38	12	31	18	35	22	28
CATTTGTAGTCTTAAC	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
GTGTGGGTTTCACCTC	ref_3356_RC	72	31	102	73	25	89	15	63	30	102
ACCTAAGCTTTTTTAC	ref_3356_RC	294	60	365	295	107	275	84	274	88	258
TTCTCCTCCATATTGC	ref_3356_RC	140	46	176	166	40	122	39	141	49	137
TTACTGAGCGTTACTA	ref_3356_RC	29	7	41	22	4	26	1	17	10	25
GATTTTCTGCCCACAT	ref_3356_RC	121	42	172	150	43	139	49	119	30	142
GCAGGTCTTGTAGTAT	ref_3356_RC	230	75	265	286	82	241	86	221	75	229
AGAGATACTGTTTACT	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
TATTTACCCTCAAAAA	ref_3356_RC	139	37	205	135	29	136	33	112	40	141
TCCTGCGCAGGACGAG	ref_3356_RC	267	61	302	275	60	288	77	267	94	277
AGGATTAATGTTCGGA	ref_3356_RC	473	125	578	499	125	436	132	470	141	459
TCGGTGCACTTACCAG	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
GGGATTAATCTTTCGA	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
AGTCCAGACTAACTTA	ref_3356_RC	50	20	58	59	21	36	21	44	14	38
GGCGCATCGTTCCAGA	ref_3356_RC	96	27	95	85	24	92	35	80	31	98
TCTCTGCGCATCTCTT	ref_3356_RC	195	70	251	198	72	203	85	201	74	181
TACGGTGCTTGCACAT	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
GTCCGTTTAACTAGTC	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
TTTGCGCCCTTCGCTT	ref_3356_RC	452	149	605	477	160	471	155	448	137	408
CAAACAGCTACGGACC	ref_3356_RC	105	30	141	122	34	105	29	111	26	98
GCTCTGCTAATTACTT	ref_3356_RC	648	173	769	732	210	605	179	582	206	569
GCATATATAAAACGCC	ref_3356_RC	61	21	69	68	15	65	23	52	21	58
TGTATAATCGACGGGC	ref_3356_RC	213	64	221	216	72	215	60	184	66	210
CACCAACTGCACATTG	ref_3356_RC	108	35	122	125	68	97	42	110	50	86
GGTCCGTGCCCCTCTT	ref_3356_RC	391	177	529	471	170	387	159	442	161	422
ACGTGGGTTCCTCAGC	ref_3356_RC	33	14	45	24	6	24	9	33	18	36
ATTGCCTGTAGGCCAT	ref_3356_RC	90	39	119	92	32	94	36	113	50	94
GTCGGGACACTACATC	ref_3356_RC	546	152	643	502	165	505	152	527	174	506
TATTGGTGAGCCGGGC	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
GTCTTGATTACGCTGT	ref_3356_RC	30	4	41	29	6	30	4	24	6	13
TATACGCTTTCTGCCC	ref_3356_RC	27	9	32	26	11	21	12	30	8	30
TCAGTTCCAGATGTAA	ref_3356_RC	72	23	72	61	19	67	21	53	27	60
GCACCAGTAAGTCGCT	ref_3356_RC	430	122	528	515	142	392	137	408	155	370
GCGGTTATTCCGATAC	ref_3356_RC	475	154	566	491	156	455	130	414	164	388
TCGCGTTATCGGGTTA	ref_3356_RC	175	81	225	208	79	177	76	166	59	145
TAGATCTTATGGTAGT	ref_3356_RC	93	35	125	119	32	114	36	107	33	104
TGCATTGCACAGTCAA	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
ACTTTTACGTGCCATA	ref_3356_RC	357	124	491	413	119	314	109	378	140	348
GTGCTATGAAGTTACA	ref_3356_RC	121	29	113	102	46	112	39	96	45	106
GAGTGCCTCTTTCGTT	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
ACGGCTTGGGGTTTGG	ref_3356_RC	0	0	0	0	0	0	0	0	0	0
TCAAATGCCTTTTCGA	ref_3356_RC	107	40	113	84	30	83	49	95	23	104
TACATGTTCATGTTTC	ref_3356_RC	119	27	160	123	46	113	32	123	40	103
GCACTTATGACCCTAC	ref_5445_missing	81	110	79	85	97	78	94	66	121	78
CCATACGCCGTTCGCC	ref_5445_missing	29	30	37	22	37	32	28	24	20	26
AATCAATATGTTTATT	ref_5445_missing	0	0	0	0	0	0	0	0	0	0
CACTGGTCCAGGCAGT	ref_5445_missing	0	0	0	0	0	0	0	0	0	0
AGAACGTTTCTCTTAC	ref_5445_missing	39	51	51	37	41	38	56	32	46	43
TTAAGAGATAAATTTG	ref_5445_missing	30	28	14	25	32	23	27	16	23	26
GAGTTGATCTCTGTCT	ref_5445_missing	32	46	66	52	49	32	50	38	44	30
TTTGTGTACCATCGAG	ref_5445_missing	0	0	0	0	0	0	0	0	0	0
CTGGTCCCATCCGATC	ref_5445_missing	1	3	3	2	3	0	1	1	3	3
AACCACAATCCGCAAG	ref_5445_missing	6	4	9	6	4	6	3	3	7	5
GGTATTTGTTTAGACT	ref_5445_missing	10	12	12	7	12	7	8	9	5	5
TTTAGGTTGGGCCAAA	ref_5445_missing	11	2	10	5	8	9	12	7	19	5
CAATTAATGTCAAGCC	ref_5445_missing	8	15	11	9	8	8	7	13	21	10
TAGTCTAAATGCATAT	ref_5445_missing	14	11	11	11	14	10	11	15	9	10
TACGCACATGGATTTG	ref_5445_missing	10	16	10	13	13	7	11	14	16	7
TTTATGGTACCGGCTA	ref_5445_missing	0	0	0	0	0	0	0	0	0	0
CAAGCGCTGCGCACAT	ref_5445_missing	30	41	52	40	58	42	41	20	59	37
GTGGTCATTACTCAAC	ref_5445_missing	42	60	64	27	70	38	54	30	68	38
ATCTCAACTCTCTGAC	ref_5445_missing	42	90	49	54	65	55	88	40	56	36
GTAAAGGAATGCCGGT	ref_5445_missing	38	28	36	31	26	31	36	28	30	22
TGTACTTTTGCAGGAG	ref_5445_missing	38	45	41	31	36	27	39	33	55	29
AGAATCGAGTACGATC	ref_5445_missing	175	213	179	189	225	178	221	171	233	153
CATAGGAGTAGATTTC	ref_5445_missing	8	7	10	9	11	10	16	19	17	9
GGCATTCTGGCGTAAG	ref_5445_missing	186	206	232	173	197	166	207	169	229	156
AGTTCAACCTGTTCCC	ref_5445_missing	5	5	2	2	7	5	11	0	6	5
ATTCGCTGATTCTGTC	ref_5445_missing	23	23	34	19	21	24	22	22	24	15
ACGCTCTAGAACAGTT	ref_5445_missing	0	0	0	0	0	0	0	0	0	0
AAGTGTCCTTCCGACG	ref_5445_missing	18	21	28	24	33	27	32	25	32	17
ACGATAGATTCTCAGG	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
TCCTGAAGGTTTTGAC	ref_2384_missing	52	82	66	68	45	63	68	65	66	57
CTTGCATTGAACAGGG	alt_2384_missing	46	54	66	58	54	46	50	48	57	32
CGGAGTTTACGTAGAA	alt_2384_missing	16	15	22	17	17	14	20	17	19	11
TGTGCGACCCTCTGGC	alt_2384_missing	1	0	1	3	2	1	2	2	1	0
TTGATGGTCTCAAGGT	alt_2384_missing	101	92	104	97	101	98	118	83	100	76
TCGATGTGATCTTTTT	alt_2384_missing	56	58	86	51	59	62	44	47	78	52
TGCGCTTCCTACTGGG	alt_2384_missing	3	0	3	3	3	3	2	1	0	3
CTCTGGGAAAGCGTGC	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
AACGTTTCCGACGATT	alt_2384_missing	62	21	34	31	37	29	45	24	32	43
TATATGATCTGTCGGC	alt_2384_missing	22	8	27	20	13	17	13	22	20	27
AGTCTAAAGAATCATC	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
TCTAGCTTATCGATCC	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
GTTAACTGCTTCTTCT	ref_2384_missing	223	191	262	242	200	209	209	233	249	210
CGTGTTTATTTCGTTT	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
ACCTTTGGTAATATGT	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
TTTACTCCATCGGGCA	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
CCAAAAAGCGTTTGTA	ref_2384_missing	199	209	250	195	209	215	207	177	199	175
TACGATCTTTTCACCC	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
GTTTGGATCTGGGAGT	alt_2384_missing	0	0	0	0	0	0	0	0	0	0
CAAACGGAGGGAGTTG	alt_2384_missing	28	13	26	24	20	16	34	17	31	25
TGGCTATCACGGTCTA	alt_2384_missing	36	52	58	46	49	51	55	36	46	34
GCAAGGTCTCGGCGCT	ref_5856_new	23	33	23	21	21	15	32	13	33	20
ACTTTGGGTCAAGGTG	ref_5856_new	16	17	7	13	19	12	20	12	12	14
TTTTTGCCTGCTTCCG	ref_5856_new	6	9	7	8	6	6	4	8	11	10
CTTTCTAGCCATGATA	ref_5856_new	32	51	57	47	65	39	76	44	55	44
GCATCTTCTCCTTCCC	ref_5856_new	0	0	0	0	0	0	0	0	0	0
GGTATAAGCTCATGTT	ref_5856_new	42	70	32	60	67	42	56	41	78	50
GTCATCTACCGGTTTT	ref_5856_new	5	13	10	5	13	7	13	4	15	9
TCAGCTGTCTGTAGCT	ref_5856_new	33	70	42	34	56	29	72	33	86	18
TACTTAAGGATTCCAA	ref_5856_new	0	0	0	0	0	0	0	0	0	0
CTGGCTAGTTGTCAGT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
GAATCTCTAATCGGTA	ref_5856_new	25	25	19	21	29	16	23	17	36	15
CGATGCTCTGCCATGC	ref_5856_new	0	3	1	0	4	0	3	0	3	0
ATCGGGTACGTCCCAG	ref_5856_new	11	11	16	8	13	10	13	6	6	11
TCGCGTTAATAGGTCG	ref_5856_new	8	8	11	8	16	5	11	5	17	9
AACCGTGAACGAAGCC	ref_5856_new	7	15	8	10	15	16	25	7	18	5
AGGGGTTTGTTGACCC	ref_5856_new	2	2	2	1	7	0	6	2	2	4
CGTGCATGGGCGTTCC	ref_5856_new	0	0	0	0	0	0	0	0	0	0
CACGTGATTTATACTA	ref_5856_new	0	0	0	0	0	0	0	0	0	0
TAGGCTCCATCAGTGT	ref_5856_new	3	12	3	9	6	7	16	6	19	5
TTGTATTGCACGCCCT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
CTATATCTTCCTAAAA	ref_5856_new	0	0	0	0	0	0	0	0	0	0
GTAATGAGACTACTGG	ref_5856_new	24	39	28	37	40	30	25	35	51	28
ACCGGTTACGTATATT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
TGTGTCAGTTAATAAT	ref_5856_new	5	8	12	13	5	6	6	8	6	7
GTCAAGCCGCCGTCAT	ref_5856_new	6	15	6	2	15	10	21	9	9	8
CTTTTACAATGAATCT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
CCGGCCATTGTCGTTA	ref_5856_new	2	22	5	4	28	2	25	2	28	1
CCAGGACGAGGCTATG	ref_5856_new	26	127	30	25	153	17	120	18	130	22
TTTAGTATCAGTGGAT	ref_5856_new	25	42	35	18	57	34	40	38	52	18
CTCGACTCGGATTTGA	ref_5856_new	15	17	17	22	20	17	28	16	30	12
CCACTGACTGGGTACG	ref_5856_new	1	13	2	1	12	5	11	1	18	1
GTAATCAGCCATAAAG	ref_5856_new	26	40	26	28	58	16	39	14	47	25
TACCTCAAATCATTGG	ref_5856_new	0	0	0	0	0	0	0	0	0	0
CGTCCGACAGTCGCTT	ref_5856_new	2	9	5	4	4	2	4	1	9	5
GAATGTATTCAGCGTT	ref_5856_new	37	46	37	33	42	24	57	28	53	30
GTGTACGGGCGTTTTT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
GACGTCGGTGCGGCAG	ref_5856_new	21	46	38	30	47	33	60	29	51	25
GGCCACTGGCAAGTGC	ref_5856_new	11	18	12	8	26	6	12	10	15	3
ACAGAGACGTTTCGCG	ref_5856_new	78	92	73	73	118	71	107	66	122	71
TCATTATGGGGAATAT	ref_5856_new	62	87	81	59	120	57	112	61	93	64
TGGTGAAGGCGAGCAT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
CAAGTCCATTAGCAGA	ref_5856_new	19	42	34	16	24	24	30	20	44	9
TCAAGTTTTGTTAGTC	ref_5856_new	29	32	22	19	31	22	35	14	33	15
TGATCGTGTCGTCTAT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
TGTTATGGTTAAATTG	ref_5856_new	5	16	9	4	19	3	15	4	20	1
CATCACGGGGGGGTGA	ref_5856_new	30	34	42	29	36	39	46	18	26	16
TCGATCTGTCCCATTA	ref_5856_new	0	4	3	3	5	1	7	1	7	0
TAATTCACAACTTAGT	ref_5856_new	5	14	8	7	10	5	12	6	17	6
CACTCTTACTAGGGCG	ref_5856_new	0	0	0	0	0	0	0	0	0	0
AGGTTTGGCCGAGCAA	ref_5856_new	30	60	42	26	59	40	73	27	66	32
GATAAATAGTATCCTT	ref_5856_new	0	0	0	0	0	0	0	0	0	0
TCTCCTTTTTACGGTG	ref_5856_new	0	0	0	0	0	0	0	0	0	0
CAGCGAGCTTACGGCA	ref_5856_new	0	0	0	0	0	0	0	0	0	0
TTATTTTCATAGTTAG	ref_5856_new	20	44	42	20	32	24	39	27	46	21
TGGGAATGACTAAGGG	ref_1454_upstream	54	32	47	54	37	58	51	44	44	52
CAAATGAGCTGAACCA	ref_1454_upstream	81	70	88	74	54	60	57	75	53	63
TTATAACCAAAATCCC	ref_1454_upstream	14	12	22	6	17	17	12	17	16	18
AGCACGGGGGTTCCAC	ref_1454_upstream	19	21	24	10	15	17	21	13	15	14
ATATTCGTTGTTGGGG	ref_1454_upstream	23	18	19	21	26	14	22	14	26	23
GATGAATATAGGGGGG	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
GCACGTTTGGTGCAGG	ref_1454_upstream	26	33	37	16	27	26	33	14	41	30
CTACGTGAATCACGTC	ref_1454_upstream	130	113	128	126	113	102	115	108	128	99
CTTAGAATACTTGTGG	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
ACTTCGCCATTTAGTT	ref_1454_upstream	43	50	64	48	41	46	43	44	56	38
AGGGTCTAACGTCTGT	ref_1454_upstream	29	14	26	16	19	25	28	10	7	20
TATTTATAGATGTACC	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
ACCGTTTGCTTACGTA	ref_1454_upstream	17	14	13	25	15	14	16	12	24	12
GATGAGGCCGTCAGTT	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
CGTGATCCATCCCACT	ref_1454_upstream	24	15	19	26	16	22	24	26	35	27
ATTAGAGCCTTTCGCT	ref_1454_upstream	26	23	38	25	37	26	23	26	42	17
AAGCGTTGATTGACCT	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
CGTAAGAGGCTTTTTC	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
GGAACTTCCGCATGCG	ref_1454_upstream	44	40	55	36	42	37	52	41	43	37
TCGGGTTAAGTACTTA	ref_1454_upstream	10	14	8	6	19	15	20	11	33	3
TTGACAAAGGGTTTTA	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
AGATATGGTCTACGAG	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
CCGCTGTATCTATTTT	ref_1454_upstream	39	72	69	66	91	58	92	57	73	63
CCCCCTGAGGCACGCT	ref_1454_upstream	22	30	26	26	22	26	17	19	32	15
GTTGGAATCCCCTATG	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
TGGGCCATGGATCACG	ref_1454_upstream	45	43	63	49	36	41	33	61	49	42
CATCCGTAAACCATCC	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
AGCCCATTGCGCTCTG	ref_1454_upstream	2	1	2	1	3	0	5	1	3	4
GTTGTTTGTGGTAGCT	ref_1454_upstream	85	78	96	85	67	79	85	80	83	65
TTTTTTCCATATCAGG	ref_1454_upstream	32	28	59	46	28	49	36	46	35	29
ATGTCCGCCATGTGTG	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
TCCATTTATGCGTGTG	ref_1454_upstream	61	51	72	58	50	43	55	53	55	55
ACATGCAACTCGAATG	ref_1454_upstream	10	4	6	5	4	8	9	4	11	6
CTCCTCCTGCGTACGT	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
CCAAGTGGTATACGTA	ref_1454_upstream	91	93	103	113	63	75	78	95	70	66
GGCCTATTAACACCGT	ref_1454_upstream	31	43	47	53	35	51	38	38	35	32
CTCTGGCTTGCAATTG	ref_1454_upstream	33	34	26	29	20	33	12	27	31	20
ATGTGTGTGCTCTGAG	ref_1454_upstream	0	0	0	0	0	0	0	1	0	1
TTTCGTAATGACGTGT	ref_1454_upstream	98	85	102	80	75	80	88	85	93	73
GACAGCAGGGCGCGCA	ref_1454_upstream	5	10	9	8	5	10	11	8	5	6
CTTGCGCGCGGTCGAA	ref_1454_upstream	19	19	15	18	15	15	18	15	17	14
CCCAACTCGCCCTATA	ref_1454_upstream	25	23	48	25	29	27	28	28	31	25
CTGGTATTTCGGTAAG	ref_1454_upstream	5	10	10	9	5	3	7	2	5	4
AGTTCCAGCATCGTGA	ref_1454_upstream	0	0	0	0	0	0	0	0	0	0
ACGCACATGAGTCGCT	ref_1454_upstream	54	51	77	62	44	53	55	56	59	65
ACTGCAATATAGCAAC	ref_1454_upstream	5	4	7	10	4	3	4	2	7	5
AAATATATAGGTTCCC	ref_1454_upstream	11	6	13	12	11	6	13	18	8	17
TATACCGGGGAAAACG	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
CATCAGGGGGTACATA	alt_4700_missing	6	7	2	5	7	8	8	7	9	7
CTAATTTCACGGCTGC	alt_4700_missing	79	120	83	62	92	84	110	88	111	64
GGTTCACGCTTCTATC	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
TGACGACAAGGATCCT	alt_4700_missing	11	13	23	11	15	12	13	8	16	20
TACGAATAGGTCCTGT	alt_4700_missing	21	36	30	17	32	21	45	22	37	18
CAAGACCCCAAGAAAA	alt_4700_missing	71	104	103	82	91	91	98	83	103	76
TTCATACGCTTAAGGG	alt_4700_missing	28	20	47	28	30	33	45	22	45	30
CAATGCCGGATAATCA	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
TCATTGTGTTGGTCTG	alt_4700_missing	24	28	16	16	24	19	31	13	29	13
GCTGGTTGTCGTCCAA	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
ATATATGGCTGCGGGC	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
AATTGCAAGCCCCAAT	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
CATTTCATACGCGTGA	alt_4700_missing	58	65	50	49	48	46	66	43	66	36
CTCGCGCATTTTTCAT	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
ATGTCTCAGATAGGAG	alt_4700_missing	1	2	2	1	1	1	3	4	0	2
TGTGTTCCAAGTGATT	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
TTGCGTACATGGTGCG	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
CTTATCTCATCTAAAT	alt_4700_missing	47	32	32	55	80	52	53	50	52	40
ACATTTTTTTTGTTAG	alt_4700_missing	16	18	21	21	29	25	39	15	23	9
CAAGGCTTTACCATCC	alt_4700_missing	145	202	197	190	199	187	211	161	218	162
GCGCCCGTGGCCACAG	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
TTGGATAAATTTCCCA	alt_4700_missing	18	23	18	16	28	17	21	17	32	13
GCGGCGCAAATTCTTG	alt_4700_missing	16	23	13	22	28	18	24	15	27	7
CTCGCCACAAGACGAG	alt_4700_missing	0	0	0	0	0	1	0	0	1	0
TCGGTTAGTAACGCCT	alt_4700_missing	11	9	8	4	8	8	9	4	9	4
AAGTGACGATTCTCTT	alt_4700_missing	0	0	0	0	0	0	0	0	0	0
TAGGTCTTCTTTATGT	alt_4700_missing	12	4	16	16	9	4	7	6	15	12
ATATTCAAGTGGCGCC	alt_6121_new	0	0	0	0	0	0	0	0	0	0
ACACGCAGGATGTATC	alt_6121_new	18	13	16	19	8	10	10	16	11	15
CGAATTGGTCATACGG	alt_6121_new	36	34	38	29	44	22	38	28	47	26
GTAAGTGATCCATCAA	alt_6121_new	4	1	5	8	9	8	6	5	1	6
TTACTGGTGCTTTCGA	alt_6121_new	16	17	21	22	27	18	21	28	23	16
CTCAATCAGGCATATG	alt_6121_new	1	0	4	0	3	0	0	2	2	1
TGGACGGTGGCCCGTT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CTGAGTGCGCCGGCTA	alt_6121_new	5	6	8	4	3	4	4	7	5	6
CTCGGCATCGTTATCT	alt_6121_new	56	51	68	50	48	48	47	57	45	44
AGCTTAAAGACTCATT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CCACCCCTCCTGGGCC	alt_6121_new	35	63	64	56	62	51	71	41	62	38
GAGAGCGCCTGTCAGT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CCAACGTCCTTTTTTG	alt_6121_new	8	10	22	17	18	3	6	12	9	8
TTATTCAAACTGACTT	alt_6121_new	17	16	19	16	14	17	30	14	11	18
TATACTATTTGAGTCG	alt_6121_new	52	54	79	56	70	61	55	51	77	54
GCGTTACAGCGTTTCT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
ACGTGTCAGTTGGTTT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
ACTCGGATATTCCGCC	alt_6121_new	20	21	22	27	15	17	21	33	32	12
GATAGCTACGCAAATC	alt_6121_new	21	16	38	29	16	24	34	34	32	31
ATAGTGGGGAGATTAC	alt_6121_new	40	41	38	41	22	34	39	28	40	38
GTCGTGTCTCCGTCTT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
TTCGTTCAACCTCTTG	alt_6121_new	60	78	82	57	70	59	78	54	82	28
CGTGCCCGGCTTTTGC	alt_6121_new	22	29	31	23	21	20	27	21	29	24
CTTCTGCGCGTCAATA	alt_6121_new	2	4	5	7	4	2	4	2	11	3
AACCGAATTCCTCTCG	alt_6121_new	0	0	0	0	0	0	0	0	0	0
ATCTATGCCAGATCTT	alt_6121_new	29	24	36	47	34	17	32	31	31	28
GGTGCGTCTCCAGACT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CCTTTCCAAGGCATAA	alt_6121_new	69	61	101	86	61	72	75	63	71	75
GGATCAAGTCCATCCG	alt_6121_new	115	142	121	115	140	107	135	93	132	99
CCTCTTTATTGCGTAC	alt_6121_new	20	69	28	25	51	32	62	20	73	11
ACGCGGGCTACAAGCA	alt_6121_new	3	3	8	4	5	2	5	3	4	3
CGTTGCTACCCGTGTA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
TACGTCTAAGCTCAGT	alt_6121_new	16	31	29	29	29	23	30	25	30	21
CTTGATTGGAGTTGCT	alt_6121_new	16	8	14	16	9	15	19	10	12	17
TGACCAGAACCTCGCA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CAACAGGAGCGACAAG	alt_6121_new	7	6	9	9	6	8	13	16	9	6
CAATTCGATGCTGCAC	alt_6121_new	85	95	122	104	84	86	101	73	84	87
CGTGTGATGTCCGTAA	alt_6121_new	21	14	23	33	18	18	26	17	18	13
CTTCGAAATCGATCTG	alt_6121_new	42	38	44	39	48	38	43	52	38	36
GTCGGTCCTGCCATAA	alt_6121_new	69	71	89	84	69	87	78	85	98	78
TGCACCTGCGAAGGGT	alt_6121_new	14	30	15	11	22	11	22	10	34	9
AGTGCCCGTGGGTTGC	alt_6121_new	19	24	32	25	30	28	22	19	25	16
TCGGCGGTTATTCAGG	alt_6121_new	58	51	62	39	75	49	47	58	63	46
TAGCTCCAAGCGATCG	alt_6121_new	83	82	112	102	91	92	82	93	87	81
TCTTCGATGTATCGCC	alt_6121_new	23	23	17	11	21	21	21	13	25	20
GCCCTAGGCCATCTTT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CAGCCCCCGCCAATAT	alt_6121_new	4	6	14	2	15	7	11	4	6	3
CGTCAAGCGGAATCCG	alt_6121_new	66	80	79	58	75	66	71	52	69	62
AAACTTCTGAGGTAGA	alt_6121_new	17	16	18	26	17	18	36	13	24	13
CTCTTTAGGGTAGCCA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
GATACCTTGTTTTTGG	alt_6121_new	5	4	9	3	7	11	4	10	3	1
TGGTTCTAGAAATAAC	alt_6121_new	0	0	0	0	0	0	0	0	0	0
GGGACCATAGTCTGAT	alt_6121_new	14	20	22	17	11	20	16	14	17	19
TCTGTACATGTGCTAA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CTTCTTCCACCGCTAG	alt_6121_new	6	16	15	14	18	13	26	13	15	7
TTATGAGTCAGATGTC	alt_6121_new	49	69	61	58	60	56	50	47	68	48
GCTTTAGAACATTTTA	alt_6121_new	56	69	64	60	70	48	69	32	65	43
CATGTAACTTTCATAC	alt_6121_new	0	0	0	0	0	0	0	0	0	0
TGTTGTGAGCCAATCA	alt_6121_new	53	63	58	50	58	45	51	49	60	33
TTATTGCAGACAATGA	alt_6121_new	80	69	92	95	81	69	107	93	75	73
ACATGTATGTTATATA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
GTAATGTTATACAAAA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
TTATAAACCGTTGAGG	alt_6121_new	22	17	17	13	24	15	23	9	23	15
CCACCGCATGTTCCAG	alt_6121_new	13	16	24	12	35	9	21	12	16	9
AATCCATCTTTTAGTG	alt_6121_new	14	9	9	15	18	11	14	11	9	14
ATTCAAATTTAGCTTA	alt_6121_new	0	12	1	1	6	0	4	0	8	0
GTAGAAATACAGACTA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
TTAGTGCTTAATTTTC	alt_6121_new	66	65	84	76	79	69	70	69	63	62
TCGGTGGTTATCCAAC	alt_6121_new	27	23	17	29	30	22	32	32	46	31
TATTTTGTCGTTTCAT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
GACCCCCCCTGAGTTT	alt_6121_new	75	52	89	65	53	71	52	52	85	49
CGGCTATCGCCATCTA	alt_6121_new	90	109	103	93	131	64	111	78	128	72
ATTATTCTGGCATCAG	alt_6121_new	51	52	62	46	48	58	67	66	51	53
CGGTGCTCCTTGTGTG	alt_6121_new	13	16	12	7	21	8	18	14	20	12
TTCCAATTATCATTAA	alt_6121_new	0	0	0	0	0	0	0	0	0	0
GGAAGTGATATCTTCG	alt_6121_new	48	44	72	43	42	36	53	44	38	24
ACTGGGGAGTGTTGAC	alt_6121_new	19	18	19	21	16	15	16	11	27	11
GTGAGCTGTGGAGTTA	alt_6121_new	37	22	33	22	27	27	25	25	32	20
CCCCGCTTCGGTGTTT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CGAGGTCTCGCTAGAG	alt_6121_new	100	87	87	89	85	83	71	67	77	82
GTGAGTCCGGGGGCGT	alt_6121_new	8	12	4	5	11	10	13	8	9	4
TACCCCTGGGAGATAC	alt_6121_new	1	8	5	2	4	1	4	5	8	1
CATCATTAATTCCTTT	alt_6121_new	0	0	0	0	0	0	0	0	0	0
TGTTGACAGTCATTTA	alt_6121_new	0	0	0	1	0	0	0	0	1	0
GCTGCATTTATGTCCT	alt_6121_new	15	25	20	29	21	19	21	21	27	23
ATGGTAACCGTCAATC	alt_6121_new	0	0	0	0	0	0	0	0	0	0
ACAAATAATACGTGCT	alt_6121_new	11	10	16	11	14	13	19	14	17	11
AAAAGTTGCTACGGCT	alt_6121_new	13	14	20	9	18	13	12	17	24	10
ATGTTTGTTAGCTTAC	alt_6121_new	0	0	0	0	0	0	0	0	0	0
CCCTACGTCTACTTCG	alt_6121_new	29	57	33	34	54	27	69	35	70	35
TCGCTGATTTTTTTCG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AGGCCTGTGTCGGCTC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AACTGCCACAGAGTAA	alt_18_missing	13	15	6	10	8	8	18	10	11	4
AAGATTAGTAGCCACT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AAGGTCCGGCTCGACC	alt_18_missing	3	8	7	7	12	4	9	8	11	9
CACCCCGGATTATCAG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
ATGACGATGAGCACAC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AGTGGGGCTTACCGAC	alt_18_missing	13	18	10	8	29	8	19	7	20	13
GTATAGTTGGTCTATT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
GTTTGCTCTGACATGC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
GGCTTTTGAATAGCGC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
ACTCTCTTGAACGGGT	alt_18_missing	6	9	16	12	10	9	26	6	13	7
TATTCAGATAGCGGTG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
TATTGGGGCCCGATGC	alt_18_missing	43	29	27	19	27	30	39	33	26	22
TGTCGTTCTAAAACTC	alt_18_missing	53	84	52	47	86	46	72	54	68	47
TTGTTAGTCCCCGTTC	alt_18_missing	29	52	28	23	32	18	44	16	39	18
CATTCTTTGTGTACTG	alt_18_missing	11	24	17	12	21	15	24	18	29	11
TTGAGGTTTGCTGGTT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AAGGCCGCACCAACGT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AGATAGTGCAGCCATT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CTGAAAATCGGCAACG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
TGACTATGCCTATTGC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
TGTCCGCAATATCGAA	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CGGGTGGGATAACTGA	alt_18_missing	0	0	0	0	0	0	0	0	0	0
TTCCTATTTACTCACA	alt_18_missing	26	19	16	19	23	12	29	13	28	8
CTTCTGACTTTGCTCA	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CGCCGTCATTCCACCG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
GAAAGTTTAGTGAAAA	alt_18_missing	7	9	5	5	14	8	14	9	8	5
ATCCCTGGTTTGCCGG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CACCGACCATTATTGA	alt_18_missing	2	9	8	7	9	6	13	5	10	3
ACGGCATATTCTTTCG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CAGCTGAGGGTCCATA	alt_18_missing	0	0	0	0	0	0	0	0	0	0
GTCTGACACAGATCCT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AGAAGTATTACTCACT	alt_18_missing	1	2	5	1	3	0	0	0	0	0
GCTACCTGTGAGGCTA	alt_18_missing	21	23	27	18	24	19	27	22	39	19
CTCATTAATTACTGAC	alt_18_missing	1	2	5	1	6	4	1	0	6	0
GATCGCAAGGTCGAGT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
GGTCGCAATTGGCTTT	alt_18_missing	6	14	4	11	15	10	12	4	12	6
ACACGCCTATACGATT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
TAATTTACCGCTTGTT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AGACTGGATTTGTCGC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
GCATATAGTTGTGTTG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
ACTCTTCGTTGGCATT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CAGGATGCCGAGTCCC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CGTCTGCTATGCATTA	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CCGACCCAGAAATACC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
TTCAGTGGGGCATCCG	alt_18_missing	14	16	8	9	16	15	18	11	16	14
ACCATAATAGGATGCC	alt_18_missing	12	19	13	13	15	10	19	10	25	8
TTATAAAGCGTCGTTG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
CAACTTTCATAGGGTT	alt_18_missing	8	9	8	9	20	11	15	7	18	8
TGTTAAAGTGTTGCGT	alt_18_missing	0	0	0	0	0	0	0	0	0	0
TTAAATGTTGCCGTGC	alt_18_missing	0	0	0	0	0	0	0	0	0	0
GTCTTTTATACTAGCG	alt_18_missing	0	0	0	0	0	0	0	0	0	0
AAGGCCCTGCGCGTCT	ref_5662_new	52	51	55	44	53	41	62	37	61	30
TGTAGACCTACGGTGT	ref_5662_new	4	2	9	3	5	0	3	5	3	5
TGCTCGCCGCTACCGC	ref_5662_new	28	41	39	28	51	22	61	32	49	28
AATCATGTACGTCCGT	ref_5662_new	8	12	2	2	3	4	4	4	11	4
GGAAAGTCTAGACAAG	ref_5662_new	0	0	0	0	0	0	0	0	0	0
TTGACCCATTACGCCC	ref_5662_new	9	18	10	9	13	10	19	14	18	6
CCCTCGTTGCCTTCTC	ref_5662_new	13	34	27	18	34	20	32	17	31	11
TGCTACAGGAGCATCC	ref_5662_new	0	0	0	0	0	0	0	0	0	0
TTTCACTTCCCGGGCC	ref_5662_new	5	7	4	3	11	3	18	3	14	6
ATTTGCTCCTCTACGG	ref_5662_new	0	0	0	0	0	0	0	0	0	0
TCTGGGGTGAATTTAC	ref_5662_new	11	28	14	14	29	12	42	18	32	13
GCCTTACCTATGGGGT	ref_5662_new	7	18	7	7	18	7	17	6	7	5
ATTGTTGCCGTAGAAA	ref_5662_new	22	27	24	25	30	27	32	17	33	25
GACGACACAGTATCCG	ref_5662_new	18	34	27	21	31	13	33	15	21	19
AGGTTCTTGTTTGCGC	ref_5662_new	10	16	3	11	10	10	20	14	10	14
CATGTGGGTCTGTAGA	ref_5662_new	8	13	24	13	14	12	23	10	15	12
GCGGCTTTTATCCCCG	ref_5662_new	11	26	17	15	29	12	21	19	29	12
TGCCGAGACTCCCTGG	ref_5662_new	0	0	0	0	0	0	0	0	0	0
GGGTGTAGTAGGTTGA	ref_5662_new	3	7	2	7	9	1	16	8	10	2
GTAGGAGTAAGCGGAT	ref_5662_new	65	68	82	60	72	59	81	45	81	68
ACACTGAGTCATTTCT	ref_5662_new	25	28	17	31	25	19	23	30	28	11
GCAATTTGGCAATCGC	ref_5662_new	14	15	14	7	11	14	13	5	12	7
ATCCGGATTGCTCTTT	ref_5662_new	4	5	4	14	4	10	8	9	12	3
TTTTTCCCGTTCTGCC	ref_5662_new	18	43	37	26	30	20	38	27	55	28
ATTTCAGCGTATCCAT	ref_5662_new	64	62	55	37	95	57	73	56	83	38
CAGCGAAAATGTGTGA	ref_5662_new	0	0	0	0	0	0	0	0	0	0
TCGCTCGTGAAATTTC	ref_5662_new	23	15	7	12	23	13	15	11	24	15
CGTACGTGAAGGCTAG	ref_5662_new	0	0	0	0	0	0	0	0	0	0
TAAATTTACATTTTCT	ref_5662_new	89	96	108	97	95	84	91	86	121	89
TCAATGCAATGCTTTG	ref_5662_new	24	39	21	16	23	10	29	14	32	17
ATCGCCGCCCCGTTTT	ref_5662_new	37	33	64	51	57	51	59	33	65	33
CATATGGGCTCCAGCA	ref_5662_new	0	0	0	0	0	0	0	0	0	0
ACGCGGAGATCATTCA	ref_5662_new	0	0	0	0	0	0	0	0	0	0
ACGCTGGACCCATCGC	ref_5662_new	9	11	10	5	12	7	16	10	11	11
AATGACTGCCTTAATC	ref_5662_new	6	8	4	7	14	6	10	5	13	5
TTTATTTACCCGCCTT	ref_5662_new	37	39	36	35	39	39	45	25	40	27
CATCCGTATAGGAATA	ref_5662_new	58	115	82	61	119	71	126	46	142	63
GCATGAATTCGGTGAG	alt_1349_missing	4	12	8	5	2	8	12	4	11	5
CGGATTTGCACTGTTA	alt_1349_missing	2	2	0	2	2	1	1	1	2	0
TTTTTAACACGCATGA	alt_1349_missing	5	12	5	9	5	2	6	5	9	1
TTGCCAGTTGGTCAGG	alt_1349_missing	2	0	5	1	2	2	1	1	2	1
TTCCGCGATCCACAGC	alt_1349_missing	0	0	1	1	1	0	2	1	1	0
CGAATATTCTACGGTT	alt_1349_missing	13	15	21	13	30	15	12	11	31	17
TTCGGGAATTCGGTTC	alt_1349_missing	15	29	19	20	38	19	41	21	34	23
CTATTTTCACCTCAGT	alt_1349_missing	0	2	0	1	0	1	3	1	1	2
TGGGACGTCTGATATT	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
CCGAATGTCTCAGATG	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
TCCTCATCCTTTCCCT	alt_1349_missing	5	9	8	12	13	6	6	6	17	4
AACCCACGTTTTTCAT	alt_1349_missing	23	67	40	27	79	34	82	34	92	28
TGAGCATGCCCCCGGA	alt_1349_missing	17	33	19	11	33	25	43	11	41	16
GGACGGACGCAGCCGA	alt_1349_missing	6	17	9	7	18	14	14	6	10	8
TAACCAATGGTGGTAC	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTATTCTCGGGA	alt_1349_missing	18	25	17	16	25	10	26	10	23	15
GGGTCCACTCTATCCG	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
GGGTGTTCAACTTACC	alt_1349_missing	0	1	0	0	3	0	6	1	2	0
TCGCAATGCCGATGAA	alt_1349_missing	12	27	21	21	26	16	21	14	29	15
GCAATGTGTGTGCTGT	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
TTTCGTCGGCTAGAAT	alt_1349_missing	8	26	14	15	21	3	17	6	18	15
AGGGCGATGTATTAGT	alt_1349_missing	17	22	24	8	17	9	19	17	25	12
TGCTGCCTCAAGCCGT	alt_1349_missing	13	21	24	10	18	15	18	13	25	20
ACTCTAGGGGTCACTA	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
CACGTCGGTCTCTCAA	alt_1349_missing	1	4	5	0	6	0	7	1	8	0
CGCGGTTTAAGCAATT	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
CCGATCTGGTTGTCCC	alt_1349_missing	0	6	0	0	2	0	6	0	4	0
GATGGTATTTTGAGCG	alt_1349_missing	0	3	1	2	5	2	1	2	3	3
TCACTGCCACCCTACG	alt_1349_missing	67	112	76	60	113	54	108	53	112	55
GTGGGCCGTGAGTTGT	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
GGATTCGCTCATTCGC	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
TCGAGGTCAATTAGGG	alt_1349_missing	6	7	8	6	13	7	6	15	16	6
GACGTGAAACGTTTTC	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
ACACAGAGGTCTATCG	alt_1349_missing	0	0	0	0	0	0	0	0	0	0
AAATCTTTCTGACTGT	ref_5879_new	131	41	103	86	63	107	34	91	57	99
TCCCCCGTGTTTTTAT	ref_5879_new	131	74	145	104	79	130	100	115	84	114
TAAAAGCTAACGTTAA	ref_5879_new	0	0	0	0	0	0	0	0	0	0
GCTCCCCAAGCAAGAA	ref_5879_new	6	1	5	4	2	3	3	6	1	1
TCACTAGCTATAATTT	ref_5879_new	46	19	39	48	16	37	24	43	15	39
GCCAGAATGTGGATTT	ref_5879_new	6	2	10	13	6	11	3	10	3	8
TTTGTCGTTTTTTGCA	ref_5879_new	45	23	48	23	12	30	14	37	14	46
GCGACTTACTCGTCTC	ref_5879_new	57	26	56	59	34	66	37	59	24	59
GTAAAACCCTCAGTGC	ref_5879_new	41	11	45	25	14	34	16	42	16	44
AATCATCGCTATCCTT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
GGTTCATACGATGGAA	ref_5879_new	0	0	0	0	0	0	0	0	0	0
TATGCATTCTTCTCGA	ref_5879_new	0	0	0	0	0	0	0	0	0	0
TACAAGACCTGCCACT	ref_5879_new	34	10	45	27	19	37	13	25	26	29
TCTGCCCTTGTTCAAT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
AACCTGAACGCTGGCG	ref_5879_new	0	0	0	0	0	0	0	0	0	0
ATAATTCATTTACTCG	ref_5879_new	13	5	19	16	9	19	5	21	12	16
TTTACCTTCTTGGGCC	ref_5879_new	242	102	294	185	121	230	101	207	118	229
TGCCTGGAGCGACACT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
GACGGCTCTTAGCATG	ref_5879_new	0	0	0	0	0	0	0	0	0	0
TCCGTCACTTGATAAA	ref_5879_new	85	40	126	88	50	103	45	87	51	99
TGCGCATTCTTCATCT	ref_5879_new	62	26	81	53	25	81	30	57	28	82
GGGTTAATCAGCCTGT	ref_5879_new	108	39	117	57	39	102	42	92	52	88
GTTTTGTGTCAGTGTT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
TACCCAGTCGGCAGTA	ref_5879_new	0	0	0	0	0	0	0	0	0	0
CCACCGTTTCGCCATC	ref_5879_new	0	0	0	0	0	0	0	0	0	0
TGCAGAATTCTTGTCA	ref_5879_new	41	16	39	36	25	41	23	34	18	43
TATCGTTCACTGTCGA	ref_5879_new	0	0	0	0	0	0	0	0	0	0
TCTGTAGCACAAGTGG	ref_5879_new	134	70	141	115	55	124	51	127	58	119
TACATTGCAAACTATC	ref_5879_new	76	48	94	70	34	82	35	83	48	81
CGGCTACGTATTTATG	ref_5879_new	32	7	22	15	9	15	5	18	10	17
AAAAGGTTCATGATGT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
CGCGGGCCTTGACCCT	ref_5879_new	20	20	22	19	18	9	13	12	18	12
CGAAACTGTTGCTGTT	ref_5879_new	78	33	103	88	30	75	37	82	32	81
TCTGGCGCTAACTCTC	ref_5879_new	123	57	130	88	52	96	67	93	67	108
TGTCTGTATAACTGCC	ref_5879_new	66	25	79	42	18	68	26	56	39	55
TTTCACTTGGAGGTGC	ref_5879_new	125	54	171	88	45	125	57	108	74	119
ATTCAGGATCTGAAAT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
ATTCAGGTTTGTGAGG	ref_5879_new	78	24	98	67	28	68	29	84	18	69
GTTCCCCGTCTAGTTT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
GTTAGACTCATCTATG	ref_5879_new	345	127	338	237	153	278	132	247	156	290
ACAGGGTCAGTTAACG	ref_5879_new	0	0	0	0	0	0	0	0	0	0
TGCTGTGTTGTATTTC	ref_5879_new	0	0	0	0	0	0	0	0	0	0
ATAGAAAAGCTTGACC	ref_5879_new	17	26	25	12	7	19	14	13	24	14
TTTGGGATTCATTCTG	ref_5879_new	32	9	24	15	12	36	17	24	11	24
ACCTATCTTAAGCGGT	ref_5879_new	0	0	0	0	0	0	0	0	0	0
CACTCGCTTCGTATGT	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
CCCATCCTATTGAGCG	ref_2754_upstream	10	39	25	9	47	9	40	12	40	11
GTAGCTGTAGCCATTT	ref_2754_upstream	27	35	29	32	50	24	42	24	44	26
ATTACTAGGTGGTGTA	ref_2754_upstream	13	16	17	17	13	7	17	13	26	11
GTGTATTGAATGATTT	ref_2754_upstream	36	29	38	29	32	20	35	26	34	24
TCGACACTGGTTGTAA	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
TCTTCCAGTAGCCGCA	ref_2754_upstream	18	33	16	22	26	16	29	12	30	24
GCTCCGGGAGTCTTCA	ref_2754_upstream	5	13	3	2	7	3	9	2	9	5
GAGATGATTGTTCCAG	ref_2754_upstream	35	66	40	40	65	30	62	37	63	35
ATGTTGAGCCCCGTAA	ref_2754_upstream	82	131	123	100	117	97	118	97	143	83
TTTTAAAGCCTGCGCC	ref_2754_upstream	23	55	36	25	56	25	45	30	61	33
ATTTGGTCGCTTTGTG	ref_2754_upstream	9	8	12	5	6	1	7	8	8	6
TAGTATTTCTCAGTTA	ref_2754_upstream	36	49	34	26	50	24	55	21	46	36
CTTTGACCTGATAAAT	ref_2754_upstream	40	75	59	54	110	43	94	51	99	42
TCAAGTCTGGACATCT	ref_2754_upstream	13	10	11	14	21	7	12	10	14	7
CTGCGTCCCCGTGAAG	ref_2754_upstream	17	47	18	23	70	21	47	15	63	19
TCCCCCCGCCAACCCC	ref_2754_upstream	15	53	5	11	32	13	34	9	41	10
GTCTTACTAGGGCATT	ref_2754_upstream	49	81	50	59	101	32	88	44	91	46
AAAAAGGGTTCTATGC	ref_2754_upstream	24	52	28	38	44	31	63	20	63	35
AGGGGGCGTGTACGGA	ref_2754_upstream	5	5	4	3	3	2	5	2	4	4
GTGAGATACACCTGTT	ref_2754_upstream	16	14	14	11	21	10	17	13	23	8
GGTATTGGAATACGGA	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
CTTCACATGTTAAGTT	ref_2754_upstream	15	23	29	18	29	23	20	27	21	21
CGGGTTTGCACTTATT	ref_2754_upstream	46	88	51	49	78	62	84	50	84	47
GTACTAGATCTATATT	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
TTTGATTGTTAGTCGC	ref_2754_upstream	43	73	50	40	58	40	58	46	65	32
TGGTGTTAATTTATTG	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
GAACAATCTCTATCTG	ref_2754_upstream	4	9	7	8	11	7	9	11	12	7
TCCTTGCTCAAACTCT	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
CTCCTCGTATTTGTTG	ref_2754_upstream	11	19	21	9	24	8	30	12	15	15
GGAACTGAATGTTACG	ref_2754_upstream	7	9	8	5	12	7	15	2	9	7
AGAGCGGATCTGTACA	ref_2754_upstream	19	24	19	26	45	24	36	24	32	13
AAACGTTAGTTCGATA	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
CCGCACACCGCGATTG	ref_2754_upstream	0	10	5	0	12	2	3	2	8	4
GTGCGCTCCTTGGCAT	ref_2754_upstream	34	50	30	31	39	35	59	17	43	27
CCTTGCCAAGTTCGCA	ref_2754_upstream	8	17	6	10	27	9	20	7	23	2
GGCTCTGAGCACATTC	ref_2754_upstream	7	8	3	8	12	9	6	3	9	6
AATATTGAACATAGCG	ref_2754_upstream	40	68	57	56	93	48	85	41	72	37
TGCTTGTACTATTCCT	ref_2754_upstream	0	0	0	0	0	0	0	0	0	0
GGACGGTAGCTGCATC	ref_2754_upstream	9	11	5	6	11	8	16	6	8	6
ACTCTAAACACCGAAT	ref_2754_upstream	19	24	12	18	35	15	41	12	32	14
TAGGAGCTATGCTATG	ref_2754_upstream	117	203	143	129	202	117	190	129	173	106
CAAGAACCCTTAGTTG	ref_2754_upstream	2	6	2	1	8	1	10	3	10	2
GAATGCTCTTTACGGC	ref_2754_upstream	3	4	10	9	8	1	6	3	7	8
TTGCATACTTCCAGCT	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
TAAGGTTTTAGGAGTA	alt_940_upstream	63	50	96	67	52	76	66	57	69	55
TACGTAATCCTGTTGG	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
TACACACCGCCCTAAT	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
TCCCGACTCTTGGCTG	alt_940_upstream	16	18	29	24	17	9	19	17	18	13
AGGGGTGGATAGACCT	alt_940_upstream	8	9	14	20	17	9	11	15	11	11
GTTCTGAAGATATTCG	alt_940_upstream	22	11	32	22	14	22	23	19	10	27
AAAAGCGCATCGGCTG	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
TATACAGGAGGAATGC	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
CACATTTGTTTTTACC	alt_940_upstream	41	20	55	38	20	40	28	35	32	30
GAATATACTTTAGGTG	alt_940_upstream	30	17	36	23	23	21	28	23	22	22
AGGATATGAGAGGTGA	alt_940_upstream	8	9	10	8	10	7	7	10	2	12
TTTGTAAGACTGCAGT	alt_940_upstream	160	137	214	175	153	161	147	167	172	150
CAGGGTTGATAGTCTG	alt_940_upstream	97	103	118	118	85	73	99	83	64	96
GATGTCTTTCAGTGTC	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
CCAGGGGAGCGTTTCG	alt_940_upstream	32	48	64	58	43	37	44	54	36	36
CTGGAGTACTTCTTCC	alt_940_upstream	23	36	22	20	42	21	37	19	32	18
TGCACTACACGGGTGG	alt_940_upstream	22	27	34	24	26	18	25	32	30	23
CCCATTGCTGGTCGCT	alt_940_upstream	8	7	15	11	12	16	17	14	16	17
CGAAGGCACCGTAGTG	alt_940_upstream	71	56	93	84	64	52	67	59	62	38
ATGTCACTCCCCTAAC	alt_940_upstream	0	3	0	0	6	0	17	0	11	0
GTATTCATATAAGTAG	alt_940_upstream	47	37	55	35	40	42	46	47	42	27
GTGTCTCTGTCTTGGT	alt_940_upstream	6	8	18	6	5	7	7	6	6	8
GCATCAGCCGGCCGGA	alt_940_upstream	50	51	63	55	49	27	44	40	52	42
CTGCTTGCAGGTTTAT	alt_940_upstream	12	11	9	8	3	11	5	4	3	6
CAAGCGTAGTTTTGTC	alt_940_upstream	59	35	63	62	39	35	49	49	44	52
ACTACATTGTGAATTG	alt_940_upstream	26	9	16	16	8	14	18	10	8	13
ATTCATGTGTTTTTAT	alt_940_upstream	77	74	94	58	89	73	97	70	89	71
TGCCGCCCTTGTAGAT	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
ATACCATGCCGTGTAA	alt_940_upstream	19	17	23	30	24	21	16	17	14	9
CTCGTTCAATGGTGTT	alt_940_upstream	26	30	42	38	36	24	21	31	27	29
CACTCCTCGATTTGCT	alt_940_upstream	18	46	36	36	68	22	54	27	63	10
TCAAACTCGCAAAATT	alt_940_upstream	105	79	144	131	92	110	101	94	121	105
ACACCGGTGCTATTTT	alt_940_upstream	18	14	18	22	13	14	16	19	18	19
TTGTTTTTGGGGTGGG	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
GTGTGTTGCCTCACCA	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
CGTGGCGTGTGCTTTC	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
CGTGTCCGTATATGGC	alt_940_upstream	76	71	78	86	65	56	72	58	83	75
CGCGTTGTCCGCGAAT	alt_940_upstream	0	0	0	1	4	2	0	0	1	0
ATGGGAATCAGTTGTT	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
AATCAGCCGAGCCTAT	alt_940_upstream	34	15	29	35	32	28	20	30	32	30
GCAGCCTGACCGTGAC	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
CCCTGACCACAGTGCC	alt_940_upstream	0	0	6	2	5	2	3	1	3	4
ATTGAATACGCATCTC	alt_940_upstream	139	145	178	166	155	132	126	150	139	105
AGGCGAGTTAAAGCTT	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
ATTTAGTGGTCGACTT	alt_940_upstream	55	38	58	45	49	47	47	48	53	48
CTATTATCTGAAGTAC	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
TAGTATTTGTGATGCG	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
ATCGGTCTCGCGTATG	alt_940_upstream	41	27	40	42	34	35	32	27	41	20
ACGTCTGGGTTTTAAT	alt_940_upstream	22	18	25	31	30	28	25	29	34	15
GGGTTTTGCCCTAAGA	alt_940_upstream	67	55	82	66	40	60	56	57	55	49
CCCAGCCATATCCGAA	alt_940_upstream	17	46	21	17	55	32	47	20	43	20
TTCGTGCCAGTATCGA	alt_940_upstream	330	286	404	321	268	335	285	267	299	272
ACACCCTTCGCCTAAT	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
ACCTACTGTGCGTGTC	alt_940_upstream	40	71	51	54	60	36	47	50	53	55
GAATGTGTTATGAAGC	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
CGCACCTGTTTTTTGC	alt_940_upstream	0	0	0	0	0	0	0	0	0	0
AATCTTATGTAAAGTT	alt_940_upstream	63	53	69	62	45	58	50	49	54	40
TCGTGAGAATCCGGGT	alt_940_upstream	94	73	146	85	81	104	82	80	72	72
CTGAGGTTGTACTAAC	alt_1687_fdr	60	50	64	54	48	36	53	43	45	48
TGTATCCTTCCGTCCT	alt_1687_fdr	37	19	53	36	26	37	22	32	19	39
TACATACGGGGTGCCT	alt_1687_fdr	20	18	39	26	16	26	20	21	14	15
TGCCTACCCATACTAA	alt_1687_fdr	69	70	98	106	54	77	76	78	69	71
CTGAATTTATTTATCG	alt_1687_fdr	72	50	72	69	53	58	67	49	40	45
CATACCTCGAGCACCT	alt_1687_fdr	218	139	227	196	176	177	161	208	166	211
GTTATGGCTGTATTAT	alt_1687_fdr	252	149	341	276	169	281	178	297	179	236
CCCCTATGGCGCGTAG	alt_1687_fdr	100	84	164	118	106	121	103	127	126	92
AACGCCTAATCTCCTG	alt_1687_fdr	37	34	56	53	31	38	36	40	28	41
CCAGTTGGCAATTCGG	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
AACTCCTCACTACCTC	alt_1687_fdr	0	0	1	1	0	0	0	0	1	0
TGTTAGGTTTTTCCGC	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
GTCCTGGTTATTTGTA	alt_1687_fdr	17	9	25	14	12	17	11	15	7	17
TGGTAGTGGCGGGAGA	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
TTGAGGTCATCTTCGG	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
CGCTGGAGAAATGGAT	alt_1687_fdr	218	125	248	217	135	185	144	220	129	167
ACCCGCTCAGTTAAAA	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
CTATCGTCGGGTCCGC	alt_1687_fdr	48	57	45	44	55	42	44	43	47	49
TAGAATACGTATCGTT	alt_1687_fdr	66	52	79	62	38	61	65	55	36	70
GCGTTGGTCGGAGTTT	alt_1687_fdr	104	66	108	121	76	58	61	99	52	71
ATTCCTATAACTGTCG	alt_1687_fdr	84	56	89	93	48	91	46	74	56	68
CTCTGTTTCAAGTAAA	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
TTTATTGACGCGCTCC	alt_1687_fdr	17	41	16	12	51	12	39	17	43	16
TATCTTTCATACCCGT	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
TCCCTCTGTAAGTGTA	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
TCATTCCATTCTACTT	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
CCACTGTCCCGTTATA	alt_1687_fdr	41	19	37	53	15	42	17	43	27	27
GGCTGCGGTAGTTCAT	alt_1687_fdr	136	94	166	112	94	124	117	106	88	94
TCCATATCGAATCCCG	alt_1687_fdr	2	3	3	4	1	5	3	1	2	4
AGACTGAAATTACCAC	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
GATGGCTACAGTTGCC	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCGGACGAACGCA	alt_1687_fdr	0	0	0	0	0	0	0	0	0	0
CTCAAAGAATATCGTG	alt_1687_fdr	34	31	43	26	28	39	26	44	27	37
AGCGTATACATACTTG	ref_5644_new	21	34	33	24	31	28	42	34	38	23
ATTGCTTATTTCTCGT	ref_5644_new	0	0	0	0	0	0	0	0	0	0
GCGCCGGAAAATAGCA	ref_5644_new	19	18	22	18	26	17	31	19	34	19
CGTAACAAACGCCCGT	ref_5644_new	0	0	0	0	0	0	0	0	0	0
CCTTCGGGTCACGACT	ref_5644_new	25	13	18	18	18	15	33	13	16	23
CCTGAGTAGAAAGCTT	ref_5644_new	8	18	14	7	9	8	15	11	15	11
CGGTTATGTCGGTCCG	ref_5644_new	3	3	4	8	2	5	1	10	1	4
GGAAGTATATTTAGTT	ref_5644_new	0	0	0	0	0	0	0	0	0	0
ACAATCTCATGTTTAA	ref_5644_new	0	0	0	0	0	0	0	0	0	0
TACAAACGCTCGAACG	ref_5644_new	0	0	0	0	0	0	0	0	0	0
AAACGTGGGTGCGAAA	ref_5644_new	7	14	16	6	9	6	15	3	7	4
CATTTGTCGACCAATC	ref_5644_new	10	14	5	6	20	5	16	8	11	3
ATGCTCCAATGTAATC	ref_5644_new	55	57	75	58	77	57	77	34	82	42
AGTTAACGTAGGTGGT	ref_5644_new	24	27	32	13	23	24	24	20	26	22
CCGTCGACATGTCAGA	ref_5644_new	19	51	24	12	47	11	35	15	28	18
GTCATTACAGTCAATC	ref_5644_new	0	0	0	0	0	0	0	0	0	0
GCCCTCCCTGTATTTA	ref_5644_new	12	15	14	9	13	10	16	10	16	9
GGCGGTAACTTCTTGG	ref_5644_new	2	11	6	1	7	10	7	4	11	2
CAGCACGCACACTTGA	ref_5644_new	0	0	0	0	0	0	0	0	0	0
GGGCTCTTGGAACAGC	ref_5644_new	108	113	104	112	116	88	129	109	144	100
GCTACATGATCCGTTC	ref_5644_new	25	24	32	21	20	24	26	31	28	23
CGTCCTAGGGAAGTTC	ref_5644_new	0	0	0	0	0	0	0	0	0	0
AAGACGCTTACTCGTA	ref_5644_new	3	10	14	5	6	2	9	5	14	10
CTGTTTTCTAAAGATA	ref_5644_new	11	20	17	18	29	18	19	15	22	14
AACGATGTGGCTAAAC	ref_5644_new	36	44	45	39	53	34	52	40	51	24
TTCTCGTATACTGACT	ref_5644_new	0	0	0	0	0	0	0	0	0	0
AACTTCCTTCTTTACC	ref_5644_new	35	19	18	27	36	23	40	27	40	26
GTAGGCATTCGAGCAT	ref_5644_new	101	123	111	96	116	103	118	102	104	84
AGATTGCATCGCTGAA	ref_5644_new	0	0	0	0	0	0	0	0	0	0
CTATCCCTTGTTGGCC	ref_5644_new	61	82	75	59	91	62	73	50	96	48
TTGCTCGTTCTTACTT	ref_5644_new	7	6	8	9	10	15	13	6	9	7
ATTGGCTCGTAATAAC	ref_5644_new	60	47	54	39	51	45	55	55	52	43
GTCTCGTAAGGGCTCA	ref_3516_fdr	103	24	110	114	29	99	31	103	19	90
AATATTCGTTTTCAAC	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TACTTCCGTTTATAGA	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
CGAAGCACGATACGTT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
GCCTGTCGTCGCTTGG	ref_3516_fdr	4	9	10	1	5	6	7	3	16	5
TCACGGTACTATTTTG	ref_3516_fdr	61	15	55	54	15	38	17	39	22	42
ACTTCCTTCGCGCCTC	ref_3516_fdr	479	134	671	566	167	458	170	412	165	481
GATAACGATCCGAAGT	ref_3516_fdr	161	44	199	182	37	181	53	153	52	140
TTACATGCATTGCAGC	ref_3516_fdr	232	73	237	250	65	204	88	209	76	179
GATATCGGTATGCCGA	ref_3516_fdr	39	11	56	38	11	36	12	49	17	28
CTCTCGAACATATGCG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TAGGAAATCGGGGGTT	ref_3516_fdr	57	22	81	71	13	61	15	69	21	67
GAACAGCAGGGAGCAC	ref_3516_fdr	218	71	275	221	69	210	72	215	68	191
ACAGATTGCGCCCGGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TCGGACACACCACGCC	ref_3516_fdr	31	12	30	28	16	14	16	30	9	17
ACTGTTTGCCCAATAT	ref_3516_fdr	30	9	23	32	9	14	8	29	10	18
CTTTTTTAGCTGTCCT	ref_3516_fdr	83	27	130	97	15	82	36	74	26	82
GTACGATATTAGGACG	ref_3516_fdr	163	46	169	174	50	131	60	168	60	146
CTCTGTCGGGCATTTT	ref_3516_fdr	68	26	82	58	18	54	22	59	19	48
ATCGCCGGTCCTCGGT	ref_3516_fdr	20	5	14	14	2	17	2	10	10	17
CCTCACTTCATACGGT	ref_3516_fdr	15	11	23	20	12	21	9	15	11	10
CAATTTAGTGTAAATC	ref_3516_fdr	82	12	98	85	33	88	27	84	25	53
GTTATCAATCCATTTG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
GCGGAGTCAAGCTGTT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
AGGACACACGTTTCGT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCGACGTCATCAC	ref_3516_fdr	350	98	458	398	77	308	104	369	90	312
GTTGACGCTTACTTTT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCTTTTTGCGTGT	ref_3516_fdr	39	9	49	28	5	31	10	33	7	27
AATATGTCAACGTTCA	ref_3516_fdr	76	21	75	50	20	54	26	63	21	57
AGGAAATGGGATCTGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCTGGTTATTGCA	ref_3516_fdr	146	56	176	132	40	127	55	127	65	104
TGCAGGATACACGTAT	ref_3516_fdr	45	15	47	72	11	56	20	49	8	51
AGCCCCTCTGAGACCC	ref_3516_fdr	114	42	163	136	41	114	31	113	24	77
TGACACATTGGTCCTA	ref_3516_fdr	112	41	116	84	23	93	28	110	31	97
CGTCCCAACAACTTAA	ref_3516_fdr	139	50	171	133	57	131	58	141	39	121
CCCGTCAGCCTCATGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
ATGTTCGGCTTCTTAG	ref_3516_fdr	182	66	215	190	48	185	54	206	60	167
TGGTTTCGGTGTACTG	ref_3516_fdr	213	68	304	218	62	195	66	220	81	170
GTGTGGCGAATGGTTC	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
GCATTCTTTTCTAGTA	ref_3516_fdr	104	85	106	78	83	89	73	87	86	95
TCCAGTACAGGTATTG	ref_3516_fdr	160	58	177	213	54	160	74	143	70	157
ATATTCTTTACGGTCC	ref_3516_fdr	97	23	97	52	22	78	21	72	18	60
GTTACATTCTCTTAGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
CAGTTATGCCCGCTCG	ref_3516_fdr	55	12	55	56	8	51	15	27	20	39
TTAGTGCCTGCGCCGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
ACAAGTCCCTTGGATC	ref_3516_fdr	121	36	164	140	62	125	52	114	63	105
CAACTTATGATTCCTG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
CATGGAGACTGAGTAA	ref_3516_fdr	169	46	185	167	45	167	43	155	53	112
ACGGTACCGCTGTTGT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCATCGTCTTTCC	ref_3516_fdr	73	18	106	104	27	91	25	84	30	80
CCCTGACGGCCGACAC	ref_3516_fdr	150	107	183	188	103	175	138	173	150	108
CCTCTGTCAAGGTCTC	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TACAGCGTATAAAGTC	ref_3516_fdr	87	33	92	88	17	81	23	80	33	82
TCTACCGACTTTGAAC	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
CCGCTCCCCACCGACA	ref_3516_fdr	18	15	25	23	22	13	24	15	23	14
TCGGCCACTTGAGTTA	ref_3516_fdr	189	62	277	241	63	197	73	217	68	201
GAGTCTATTAGTTCTC	ref_3516_fdr	66	17	81	60	22	63	35	57	26	62
GTTGTGGTTCAAGCAG	ref_3516_fdr	40	11	46	68	6	41	7	36	16	42
AGGGGGCTAGTGTTGA	ref_3516_fdr	112	36	126	115	28	90	33	110	38	85
TAGGTATGTCGTCTAT	ref_3516_fdr	329	114	382	347	117	263	116	340	140	311
TATTGATATAACGTGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
ACAATCGCTTCGTGTC	ref_3516_fdr	74	25	87	72	19	67	23	86	16	64
CCCACGTTGTCCACGT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
ACTTGCCTGCCATTGT	ref_3516_fdr	4	2	6	7	2	8	3	8	0	1
TGAGTTCTGCATTGGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TTCATTGAATAATCTA	ref_3516_fdr	49	14	47	32	3	40	10	50	20	17
TTTTGCATTGTAAGGC	ref_3516_fdr	1	3	13	13	1	4	2	8	3	8
TTCAGACCTCCTGGTT	ref_3516_fdr	56	13	73	76	19	60	13	61	20	61
CTTCTCCCTCGGAGTC	ref_3516_fdr	38	16	49	51	24	34	20	45	12	35
CTACTCCCGTGTGGTA	ref_3516_fdr	66	47	114	93	64	95	65	100	65	81
CATCTCACGAGTAGAC	ref_3516_fdr	16	9	26	22	8	21	7	19	8	26
ATTATGTGAAAGCATG	ref_3516_fdr	73	25	131	83	23	94	30	96	23	64
TACATTTTGGGCCTTC	ref_3516_fdr	69	15	88	64	12	64	10	64	12	50
CGTAATGAAGCTCCGA	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
CAGAAATTTGCATGAT	ref_3516_fdr	424	137	504	420	119	387	127	424	137	336
TGGGGACTATTACTTG	ref_3516_fdr	11	0	13	16	1	9	4	13	7	16
ATTGAGACAGGAATTG	ref_3516_fdr	42	11	57	33	13	50	12	37	11	34
TGGGGAGTCCCGACTC	ref_3516_fdr	74	29	93	71	12	62	16	66	29	56
GTCACTGTGATAAAGA	ref_3516_fdr	144	43	207	193	53	176	43	182	52	146
CCGCCTATCGCATCTG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TTACCATCATTAGGCC	ref_3516_fdr	631	202	724	600	187	573	192	577	180	510
CCGTAGGATTATCTTT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TCTGCCGGGGTAATAT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TATGATTTGGAATACT	ref_3516_fdr	66	17	78	71	16	59	17	70	35	63
AGGTCGGTGGCGATGT	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
CGCTAACTAAGTCTAT	ref_3516_fdr	222	61	300	241	87	213	70	223	95	187
TGTGCGCGTCGTTAAT	ref_3516_fdr	161	43	182	159	39	163	49	121	56	125
TATGCCAAACCTATTT	ref_3516_fdr	31	10	28	18	13	22	8	34	12	11
TAGAATCTATTCGTCA	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
CGGCAATTTGAGTAGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
TATGGTGTAGTCAACT	ref_3516_fdr	173	60	229	227	56	170	58	191	69	188
CGTTTACGCCGTCTAC	ref_3516_fdr	158	67	230	207	88	168	61	179	78	168
GTAAATAGACACCCTA	ref_3516_fdr	156	37	192	148	31	130	60	132	53	140
CTGTGTCAGGACTTGT	ref_3516_fdr	113	31	100	116	36	93	33	94	27	73
GCAGGAAAAAATCAGG	ref_3516_fdr	0	0	0	0	0	0	0	0	0	0
AAAGTTGCTGCTAGTG	ref_3516_fdr	318	96	478	386	89	334	118	353	109	310
TATTGGGTGCCCCGCC	ref_3516_fdr	103	29	132	126	45	109	37	110	33	82
TGCGGAACAATAATGG	ref_3516_fdr	20	3	29	16	9	18	5	26	3	18
ACGTATAGCCCCGGCT	ref_3516_fdr	68	14	84	90	16	81	24	71	11	54
GCACTTTCGTATCTCC	ref_3516_fdr	154	35	155	117	34	113	35	117	46	131
TGGCTTGGGACTCCTT	alt_5462_missing	90	135	139	109	161	119	130	107	157	95
TGTTGCTTTCCAATAA	alt_5462_missing	43	37	32	28	49	30	41	36	63	28
AACCATTGGGCAGTAA	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
TCCCGGGGCGCCATAC	ref_4424_missing	17	16	18	12	25	13	22	13	28	15
ACCGAGAATCCGAAGT	ref_4424_missing	21	18	30	17	34	21	23	14	25	15
CCGTGGTAATATATGT	ref_4424_missing	21	35	25	13	21	25	37	15	43	15
TGCTCATTTATAGTGG	ref_4424_missing	4	13	8	5	19	6	16	11	11	7
AAGGTGCGCACTCTGT	ref_4424_missing	38	64	39	34	84	36	94	35	88	29
ATTTTAGGACCTGCCC	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
CATATAAGCTTCCCCC	ref_4424_missing	37	71	38	27	83	30	71	32	80	38
GATTGCTATTGAGTGT	ref_4424_missing	13	40	9	12	26	12	44	13	40	19
CGCTAAGTCTATTTCG	ref_4424_missing	6	6	7	4	13	10	13	4	13	3
TGCAGGTCTCTAGGGG	ref_4424_missing	49	106	45	46	104	44	99	36	127	35
TCTGTGCTCGCTCCTC	ref_4424_missing	3	6	3	3	6	10	10	0	9	1
CAGCATGGCCGCTTTT	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
GCAAAATAGCGACGAC	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
AGCCCTTTTCCAGCCG	ref_4424_missing	9	22	4	9	18	10	14	12	19	10
TCCTTCTTGTGTATTC	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
GTCTAACCGTTCAGGT	ref_4424_missing	35	84	32	30	102	39	82	36	79	37
TCTACTTTCATTCTTC	ref_4424_missing	30	56	41	50	60	41	70	40	93	45
CAGGTACAATCTGGTA	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
AAGTATCGCATCTTGT	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
CTCGCCATTCTTGAGC	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
ATACTGATTCTCTCTC	ref_4424_missing	13	26	21	18	12	15	35	11	38	13
TTCATCACATAAGCGT	ref_4424_missing	19	32	17	20	28	21	45	12	49	11
GTACCACGTTAGGCCG	ref_4424_missing	54	182	87	66	173	58	174	60	174	67
TCTATTCAGAGTACAA	ref_4424_missing	20	32	24	14	30	19	43	15	29	15
CTCCAGCAACAGTCGC	ref_4424_missing	8	10	11	8	15	7	14	11	19	13
CGGCTATAACTTATAT	ref_4424_missing	3	5	3	0	2	1	5	1	6	2
CACACGAATTTGCCTA	ref_4424_missing	6	15	6	6	12	2	15	5	19	3
GACGAACTGTGCACAT	ref_4424_missing	17	27	14	13	13	13	27	9	23	9
GTTATATTATGGTCCG	ref_4424_missing	0	0	0	0	0	0	0	0	0	0
TTTATTATTATAACGC	ref_4424_missing	2	1	1	0	1	2	3	1	0	1
GTATTCCGCCAGCTGG	alt_263_missing	25	27	17	20	30	18	36	19	43	29
ATAAGTTGTGTGGCCC	alt_263_missing	3	6	5	4	3	2	2	6	2	0
GAATTGCCCGCTATTG	alt_263_missing	18	34	21	19	27	17	37	15	41	22
ACCTTCGTGATTCGCA	alt_263_missing	18	21	25	21	11	10	29	14	26	12
TTCATAGATCGGTGTC	alt_263_missing	16	21	18	10	39	9	23	16	28	19
TTCTTCTCTGGTTTGT	alt_263_missing	46	32	36	21	24	26	35	24	34	26
CAGTCCTAGGGGGACA	alt_263_missing	0	0	0	0	0	0	0	0	0	0
CATTTTTCTCGTGCTG	alt_263_missing	17	35	24	11	21	26	26	20	26	21
AAGCCTATACGCATCG	alt_263_missing	26	32	28	23	25	20	33	17	36	30
CCCGTGAAGTTTGAAT	alt_263_missing	3	7	2	0	8	0	3	1	6	0
CAAATTTAGCAGACAC	alt_263_missing	8	17	9	8	11	9	9	9	12	8
ACGTGCAGTACGCTTT	alt_263_missing	0	0	0	0	0	0	0	0	0	0
CGTACTGTCTAGCGTT	alt_263_missing	54	80	57	55	82	43	79	40	80	50
TTAATAAATATGGCAC	alt_263_missing	49	47	33	50	47	42	68	26	72	39
TATGATTTGCTTTTCC	alt_263_missing	27	32	25	15	23	20	34	23	34	27
GCTATCTAACAGGGCT	alt_263_missing	4	5	6	7	10	4	7	1	9	2
TACTCTTATTGTTCGG	alt_543_missing	29	35	31	29	30	34	40	28	47	19
GTAGCGTGCCAGGTAC	alt_543_missing	0	0	0	0	0	0	0	0	0	0
GAGCGTTGCCTCATGA	alt_543_missing	0	0	0	0	0	0	0	0	0	0
TGGGCCTTTGATTGAT	alt_543_missing	60	63	61	45	69	52	89	37	79	33
ATTTATCGATTATTTG	alt_543_missing	0	0	4	1	0	0	0	0	2	1
GCTACTCTGGCATTTA	alt_543_missing	13	18	16	15	24	13	14	9	31	17
CGCCAGGTACTTACTC	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
GATAATTGCGCCCAAC	alt_1786_upstream	4	8	10	7	9	9	16	5	20	7
TTTAGGCGGGCAATTA	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
GATAGTCCGATTCTTT	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
TTCTAAATGCGTCTAT	alt_1786_upstream	2	4	5	3	5	3	4	3	6	2
ACCTACTGCTGCACGG	alt_1786_upstream	19	57	40	29	58	50	78	22	68	38
CAGCCTTCTACGTGTC	alt_1786_upstream	26	101	50	30	74	35	85	36	95	39
CGCCAAGCCAGGCCCT	alt_1786_upstream	43	61	49	32	64	46	72	35	79	24
AGCTCGTCTGGAGTTT	alt_1786_upstream	10	22	21	12	32	15	28	14	29	5
GGGGCTGTCAACTTTG	alt_1786_upstream	11	20	17	13	20	9	24	18	29	5
ATTGATGCATTATAGT	alt_1786_upstream	24	54	36	25	34	25	41	27	51	32
TCTCTCCGCAGCTGAG	alt_1786_upstream	67	105	72	55	94	51	110	57	107	40
TGTAGTCATCTCGCAT	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
ACAATACACCAACGTA	alt_1786_upstream	7	12	12	12	17	13	14	8	18	9
GCCGTGTTCGGGTCCC	alt_1786_upstream	24	24	12	16	28	9	25	6	25	17
CTCTGCTAGCTATAAG	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
GAGGGACGCTTCTACT	alt_1786_upstream	34	60	47	29	60	49	60	39	82	27
TAGTGCTGAGAGTCCA	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
CGAACGGGATTTAACA	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTGACTAGAGGCA	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
TTTTTTGTTGGCTCGC	alt_1786_upstream	19	22	22	13	19	15	25	18	25	29
CCTGCTATTACGATTC	alt_1786_upstream	3	7	6	6	13	5	6	3	8	2
GAGGAGGGTAGCGCTT	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTACAGGATTTTT	alt_1786_upstream	20	46	32	28	54	19	28	19	42	20
GACGTTGATTTAAGGT	alt_1786_upstream	0	3	1	1	1	0	0	1	0	2
TCGTATCCTACGCGAG	alt_1786_upstream	0	0	0	0	0	0	0	0	0	0
GGAGTGGTGGGATCGA	alt_1786_upstream	13	31	15	18	29	26	31	21	20	5
GATAATTTTTGTTTGT	alt_1449_missing	657	119	862	728	129	690	152	632	112	587
ATAATAGAATTTGCCC	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CTAACATGGGGATCTA	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CATCAAGGACCAAGCT	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
GTAAGAACCATAGATG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TTCTTTGAGTCATTTT	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TAGTGCTTGGCCTTGG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TAAGCTACGAATAATT	ref_2433_missing	20	32	30	25	23	19	37	18	49	18
TCGGGGCTATGGCTGG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TGCTACTGCCTTCAAG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CGCTCTGCCCGTAATA	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TTTTCGTCATTACTAT	ref_2433_missing	7	13	11	3	12	3	9	5	10	5
TTTCGCTCAGGTCTGT	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
AGGGTGTTAGTGAAGT	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TTTTATGGACTACGTA	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TAGTGTGTTCTCTATC	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CCTTTGTCAGTGGGGT	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CGACCGACTTATATAC	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TTAGGCACCCAACACT	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TCACTTAGTCCTGTCA	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CTGTTTTTAGACATAA	ref_2433_missing	51	125	33	43	108	42	90	28	109	49
AATTATGGTCGTCTAG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
ATCTATTTGGCCCGTT	ref_2433_missing	6	27	9	11	23	4	14	1	33	3
AACGTTGTGTGATTAA	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TTTAGCGAGTTATATT	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CCCAAGATCAGCATCG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
CTAACGATCGCCTCGA	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
AAGCGCTTGTCAAGCG	ref_2433_missing	41	74	40	38	93	38	88	36	81	32
GGCTGATATAAATTGA	ref_2433_missing	4	15	4	3	15	7	12	5	12	1
TTCTCTGGGCTTTATC	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TCACATCGTCCTCAAT	ref_2433_missing	5	6	7	1	5	1	2	3	5	5
TTAGACCTAAGCATTA	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTTTCTCATTTT	ref_2433_missing	26	62	45	31	69	36	50	31	72	41
TCAATTTATAGGCGTA	ref_2433_missing	2	7	6	6	13	5	10	5	11	3
TGCCTGTCCCCATCCG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
TTATGTTTCACCCGTG	ref_2433_missing	1	3	3	3	4	1	6	3	6	4
TGGGTGTTAGTGAAGT	ref_2433_missing	24	59	35	22	71	24	87	22	90	28
ACAGGTTACGTGCAAG	ref_2433_missing	0	0	0	0	0	0	0	0	0	0
GTTACGTTACTCGACT	ref_5176_missing	18	26	14	17	15	15	27	13	26	5
GGCTGCACCACTTCGT	ref_5176_missing	0	0	0	0	0	0	0	0	0	0
CGAGATGCCCGTCGCA	ref_5176_missing	12	11	15	9	10	6	12	7	14	7
TACACAATGCTTGGAG	ref_5176_missing	0	0	0	0	0	0	0	0	0	0
CGCCCTTATTCCCTAA	ref_5176_missing	2	3	4	3	5	0	5	4	4	1
GGGTGATTCTACTGGC	ref_5176_missing	1	0	2	3	2	2	7	1	5	4
TGGGTTGCGTGTGGGC	ref_5176_missing	5	4	10	11	9	4	6	5	6	6
CGTTCTTTGACATAGC	ref_5176_missing	17	13	10	9	21	11	19	4	21	13
GGCGTCAATTTTTACC	ref_5176_missing	0	0	0	0	0	0	0	0	0	0
GTAAGTCAACGTGCAC	ref_5176_missing	53	52	46	49	51	41	42	34	36	40
CGGAATCCTTTAAATC	ref_3823_missing	5	4	2	0	9	4	4	2	8	2
TGCATATTACGGAGAT	ref_3823_missing	2	5	5	2	3	0	1	1	3	0
CATCTGCCAACATAGC	ref_3823_missing	5	32	7	8	18	9	17	2	21	5
TCCATTTATTTCATCG	ref_3823_missing	33	61	41	48	113	49	66	46	81	38
CCTCGTGCGCTCCCTG	ref_3823_missing	0	0	0	0	0	0	0	0	0	0
GTGCGGGCAAAGACCA	ref_3823_missing	0	0	0	0	0	0	0	0	0	0
GTGTGAGTAAGATAGC	ref_3823_missing	0	0	0	0	0	0	0	0	0	0
TAGGACGTAGCCCGAA	ref_3823_missing	5	24	15	9	21	10	17	12	24	8
CGTCCTGACCATACCA	ref_3823_missing	6	34	26	17	26	16	35	17	32	16
GTGGGGTTCCCGAACT	ref_3823_missing	0	0	0	0	0	0	0	0	0	0
CTATATTATCACTGCC	ref_3823_missing	47	73	64	35	78	27	80	31	58	40
TCGTATCGTGGCACAG	ref_3823_missing	7	9	7	8	5	5	3	2	15	2
CGATGGCCACAATTAA	ref_3823_missing	45	51	52	47	84	37	67	38	88	43
CCGTGTTGACCTACCC	ref_3823_missing	0	0	0	0	0	0	0	0	0	0
TCCTCCAGGGAGCACT	ref_3823_missing	28	48	22	23	41	26	41	12	45	22
TTGTAGGCGGCTCTTC	ref_3823_missing	25	40	41	31	39	28	64	24	46	26
ACGGAGCCCTAATCCC	ref_3823_missing	24	34	36	22	55	26	44	19	50	29
GCCGCCCGCCGACCGA	ref_3823_missing	6	5	1	6	6	4	5	3	3	2
TCCATTTATTTCATAG	ref_3823_missing	15	35	18	13	40	13	33	8	38	10
AGTGCTGCTCTTCGGT	ref_3823_missing	17	23	13	16	22	5	21	8	22	13
ATTAGCAATACTTATA	ref_3974_missing	25	15	30	24	18	15	25	19	22	18
GGTTTTTCACACTGGA	ref_3974_missing	36	40	45	57	34	31	52	43	43	28
AACAATCAGTCTAACA	ref_3974_missing	0	0	0	0	0	0	0	0	0	0
AAGTGCTATGTTTAGA	ref_3974_missing	18	18	24	27	21	25	17	19	27	13
TCCGGATGCTACTCTG	ref_3974_missing	24	25	19	14	30	14	24	27	32	19
GCTCGACAATCCCCTA	ref_3974_missing	122	69	108	90	81	89	87	66	78	90
TAACGGCCCACATATG	ref_3974_missing	0	0	0	0	0	0	0	0	0	0
TTGATCCTTAAGTGTT	ref_3974_missing	21	29	25	18	11	12	19	32	19	16
CAAACAAGTAGACCCC	ref_3974_missing	5	1	9	7	4	9	5	9	5	4
CCGAATCCGAACCCAG	ref_3974_missing	66	84	64	64	75	48	82	47	92	59
CGGCCAAGAGTCCGTT	ref_3974_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTCTAATGTAGG	ref_3974_missing	0	0	0	0	0	0	0	0	0	0
TACTCCCTTTAATATA	ref_3974_missing	4	5	6	5	10	3	5	2	9	8
GTAGATTGGTAACTTG	ref_3974_missing	0	0	0	0	0	0	0	0	0	0
GGTCTGCCAGTCTCCG	ref_556_reverse	56	54	71	55	63	64	74	56	79	50
CTTTACGTACTTGTGC	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTTTTACCCATCC	ref_556_reverse	35	29	31	36	37	35	34	27	39	33
CCGTAAATCATCCATC	ref_556_reverse	18	19	20	27	23	21	23	21	25	7
TTGGGTTCTTTTTCTT	ref_556_reverse	36	41	39	37	51	33	43	32	40	38
ATGCAACCCGGGCGGA	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
CAGGTGACCTTTTTCA	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
AGCGCGAACGAGCTCT	ref_556_reverse	41	38	59	42	35	22	43	24	41	34
TCTTTATGTGTTTAAA	ref_556_reverse	15	17	24	21	19	23	31	21	26	11
GCCGTGAACTGACACG	ref_556_reverse	40	66	66	65	83	61	81	47	99	52
AAAGTTCTGGTCCTGT	ref_556_reverse	18	31	19	14	26	23	31	16	33	22
GTACGTGTCTGGGTTA	ref_556_reverse	11	9	20	17	10	14	17	13	12	16
ATAACCGCTTTCACTG	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
TACTTGTCATGGTAAA	ref_556_reverse	8	5	10	1	4	2	5	0	2	0
TGTTACTGTTCCTTTA	ref_556_reverse	93	121	121	100	114	96	133	104	121	103
GAGAACTGGTTTAAAG	ref_556_reverse	25	31	29	18	28	19	26	21	17	18
TTTCACATTAAAATTG	ref_556_reverse	68	72	90	49	84	61	83	43	87	59
ACTACTGTCCAGTCCG	ref_556_reverse	3	1	2	1	5	3	4	2	1	2
GGAGATTATGTTGCAA	ref_556_reverse	60	11	74	47	13	52	14	44	11	46
TTATTTCAGTATCAGT	ref_556_reverse	6	15	7	6	12	5	10	3	9	6
TGTGTCTAAAATATGC	ref_556_reverse	0	3	3	4	3	1	0	2	1	0
GCCGATCGCAGTCTTT	ref_556_reverse	64	97	97	67	124	74	91	60	155	63
CTACACTACGCTTTGC	ref_556_reverse	30	20	25	16	27	18	27	20	34	26
TTTCGGCAACATATTA	ref_556_reverse	3	3	5	2	2	2	1	5	2	7
GCTCTTTATAGTTCAT	ref_556_reverse	29	65	55	31	45	28	46	33	49	38
GCGCCATGGGATTCCT	ref_556_reverse	27	25	27	32	37	24	20	36	27	28
GTTGATGTCTGTTTAT	ref_556_reverse	16	33	32	15	29	17	24	12	28	24
TGTCGTGCTTCTTACG	ref_556_reverse	31	34	55	37	47	40	33	38	48	31
CAGTTTACCACCCTTA	ref_556_reverse	8	9	12	12	18	10	12	13	20	26
GATCCTCCGGTGCCTC	ref_556_reverse	2	1	0	0	0	1	0	0	5	1
TGCCCAGAGTAGTTTA	ref_556_reverse	12	12	11	12	12	12	15	13	9	7
ACACAGGAATTTTATC	ref_556_reverse	47	62	35	50	53	37	59	44	60	39
ACAGTTCATGCTTTTG	ref_556_reverse	17	39	25	17	18	16	36	24	24	28
CTCTCCTCCCTGCGTC	ref_556_reverse	0	5	1	5	1	0	2	1	0	0
TGTGGTCTAACTCCTA	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
TCGAAGGTGCTTAGAC	ref_556_reverse	54	73	70	49	65	50	92	56	105	39
CAGGTTTTATCCTGCG	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
GCACGTAAGTGAACTA	ref_556_reverse	10	7	6	7	8	14	8	10	4	8
ACGTTCGTAGCCTAGC	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
CGTTCCAGGGCACTGC	ref_556_reverse	0	0	0	0	0	0	0	0	0	0
ACCTATAGTGAACCAA	ref_556_reverse	25	38	34	26	34	37	40	35	37	23
AGATCTCGACGTGAAG	ref_556_reverse	66	122	85	68	107	91	100	71	133	60
ACTGGTCCCCTGTGCG	ref_556_reverse	51	51	50	49	80	48	70	39	79	39
CTGGATTGTTAAGCAG	alt_6044_new	0	0	0	0	0	0	0	0	0	0
TTGGCGCCTGCTTTCC	alt_6044_new	28	28	32	18	29	24	34	26	24	19
TTTTCTCTGAGAGCTA	alt_6044_new	18	32	23	19	24	18	25	14	25	18
CCCAACAAGGTTCTGC	alt_6044_new	0	0	0	0	2	0	0	0	4	1
CAGAGTCATATAATCA	alt_6044_new	3	11	7	5	6	5	2	2	5	3
TTCACTCCTCGGCCGA	alt_6044_new	0	0	0	0	0	0	0	0	0	0
TCTGGAGTTACGTCAT	alt_6044_new	0	0	0	0	0	0	0	0	0	0
CAGGAGTGCTCTCCCG	alt_6044_new	47	73	67	48	86	41	71	39	86	36
TATAAGCCCATCTGCG	alt_6044_new	0	0	0	0	0	0	0	0	0	0
ACGTCATGTTCTGATT	alt_6044_new	39	34	28	30	38	39	48	26	58	27
TATTATCCGATTGACT	alt_6044_new	0	0	0	0	0	0	0	0	0	0
TTGTATGGTGGTTGTA	alt_6044_new	0	0	0	0	0	0	0	0	0	0
AATGATATAATCGCCC	alt_6044_new	5	13	15	16	9	3	13	8	12	6
GGTTTTGGGACCCCGA	alt_6044_new	16	23	21	13	14	14	18	18	26	10
AAATTTTAAGCCGGGA	alt_6044_new	0	0	0	0	0	0	0	0	0	0
TTTACTAATATTAATA	alt_6044_new	10	15	18	10	15	22	18	22	27	9
CTCACGCACTTTAGTT	alt_6044_new	7	7	7	2	8	3	2	5	10	5
AGAGGCATCGAAAAAA	alt_6044_new	0	0	0	0	0	0	0	0	0	0
CCAAAATTTTTCCGGC	alt_6044_new	0	0	0	0	0	0	0	0	0	0
CTAGCGCACTCCCAAC	alt_6044_new	4	32	1	2	32	1	45	7	37	0
GCCGCCCACACTCGAA	alt_6044_new	13	22	20	19	29	16	32	13	37	10
TTCACGTTTCGCATAG	alt_6044_new	13	7	16	5	15	8	21	9	15	6
ATCTAAAAAACTTATA	alt_6044_new	0	1	1	0	0	0	0	0	0	0
TCTTTCGGGTGGCCGT	alt_6044_new	15	27	24	18	24	16	26	10	31	11
TGGGGAACTCCTAAGA	alt_6044_new	24	29	31	23	29	24	20	19	43	17
CGTAGTATTCTGACCG	alt_6044_new	15	13	11	13	13	8	21	8	23	10
CGAACCAGACGGTACT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TAGTTCAGGGGCTCTG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GGTTTCTCTTTCATTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ATCTATCACTACAGTA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TCGTTTATAGTTTCTC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ATTCGTGACAGGCCAC	ref_728_missing	5	13	10	8	6	11	9	6	4	0
AAGGTTACACGCTTGC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTCATTTCTTTGCTTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ACTTAGCGGGTTGCTG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ACTGGAAATAACGTCG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTTCTAGTGTATTGAA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTGGCTTCACTTCGCT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CTAAAACCTGGGGTGA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TGTACTCATATGCTGG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTTTTAATATGTTTTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CTGCGTGTGAATGCCC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTCCATACCGCGACCT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TAAGGAATCACTGTTC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TGTTATGTCTACACGT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CTTAGGAATCCTTTAA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TATTGTTCACGGGGGT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AATGTCCTGTTGCGAC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GCATGTTTTTAGTGGC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AGCCATTCCATTTAGC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTGGCACCACATATAT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTACACGCGAATCGAG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTAAACGTTTTTTGTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TGCTGATAGCTGTTGT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CGTAAATGGCAATAAG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CTTATAGCGGGTTTGA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AGACTATTAAATGCCG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GAACGTTGATCAATCC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TGATATGTTCATGCTG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ACTTCAATTTTATTGA	ref_728_missing	3	0	1	3	0	5	2	1	4	1
TGTATCCTGGTGTTTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ACAGCATTATCCGTGA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GACGTTGACCTTGTGG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CATGAATACGTTCTTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ATTTTCTTGTGGATCT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TAAAGATTTAGCTTTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CATGGATACTTTTGGT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTTCACGTGCGTCGGG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TATGCTCTCCACTGTA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTGAATAGATGAGCCG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GACCGCAACGGTTTAA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CAAGACTGTGCTTACT	ref_728_missing	3	0	5	1	2	1	5	2	5	1
GGCAAGAGCTTAAAAT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TCTGTTTGACTACGTC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CAAGTGAATGCTCGCT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GGTTACGGATCGCTTC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ACAACAACGCTTTCAA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TGCTAGATGAGGGGCA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTAGGCGCTGATTACC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTACCGTTTCACAGCT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTAGCATTGCTCCTAA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GCCATAACCGCCACAG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CCATTCACCCCGACCG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ACTTCAACTTATCATA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TCACGCCTCCGGTCGG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTTGAGTCGCGAGACG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AGACCAACCCGCCAAG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TACCTGTCGTTTTGTC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CGATCTTACAGTAGGT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTGGCCGCACTTTCAC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTCTAGTACTTTTCAC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CCCTGCAGGATACTTG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GGCGACAAAAGAAAGT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TCCCCTTTAGACGAGT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AATTTCGCTCGCAATC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTGTCATTCACATTCG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CAATATCTAATTCCCG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AAATTAGTCTACGTTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TGGGTGGGTCTTGTTT	ref_728_missing	16	12	14	13	26	23	26	15	24	17
CTAGTGACTAAGTACC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTATATGCTGAGAATT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GGGAATAGTGGTGATC	ref_728_missing	0	0	0	0	0	0	0	0	0	0
ATATCCGTCTAGGCCA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AGCTCAATCAGTCCCA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TTTTGTTCGACACAGA	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GTCCTCCGGTCAATTT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
GCACGGCACGACTCGG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
AAATTATAGAGATTCT	ref_728_missing	0	0	0	0	0	0	0	0	0	0
TCTTTTGAGGATATCG	ref_728_missing	0	0	0	0	0	0	0	0	0	0
CCCTATTCGCGTCTAT	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
TTGAAGTAGTACTAAC	ref_5163_reverse	56	61	47	39	70	39	72	28	64	34
ACTTTGAATGCGGCTG	ref_5163_reverse	15	30	30	19	28	18	39	22	52	18
ACTTGTAATGATGTTT	ref_5163_reverse	11	13	7	5	9	3	15	9	14	8
GCTCCCTGTCAAGACT	ref_5163_reverse	1	4	2	4	4	1	5	1	8	1
AAGGTCCATCCGCCAC	ref_5163_reverse	38	56	51	45	47	29	52	25	57	47
GGTGATCTTGCGGCCG	ref_5163_reverse	52	81	55	53	75	51	95	49	73	39
TAGCAATACGCTCGTA	ref_5163_reverse	76	152	96	77	127	100	141	89	157	75
TCTAGCCCACGTTCGT	ref_5163_reverse	11	22	10	18	37	17	15	18	28	20
TTCGCTTAACTCATTC	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
CAAGGCCGTTGACCCG	ref_5163_reverse	15	18	14	9	18	12	22	16	15	13
AACATCAACTTCCGAG	ref_5163_reverse	56	92	67	52	105	57	91	67	96	46
GGCCGGATGTCCATCT	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
CAGGCAAAGGCAGCTT	ref_5163_reverse	7	20	12	7	14	11	10	7	14	3
TGTCCTTAAGTGATAC	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
CTTTTCGAACTTTCCC	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GCTTCAGAACGTCTAG	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
TCTCCCGTTACCAAAT	ref_5163_reverse	6	9	2	7	12	5	8	4	7	3
TCTAGAAGCGTCGATA	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GATGATGATTATGTCT	ref_5163_reverse	18	23	18	23	33	16	23	19	23	12
GCGCTTACGTTCTGGT	ref_5163_reverse	41	32	35	26	45	24	51	20	51	23
TTTCTTCAAGGGTGTA	ref_5163_reverse	51	91	73	48	71	60	92	49	101	46
TCCTGAAACTGTTCTC	ref_5163_reverse	24	52	29	14	46	15	53	14	76	21
AATTAACGTGCTACAT	ref_5163_reverse	6	6	8	11	13	10	11	15	9	4
TCCGGCTACAGCACGG	ref_5163_reverse	109	135	122	94	164	120	162	101	170	110
TTTCGTGTTGATAGGT	ref_5163_reverse	27	45	36	40	50	37	50	21	52	37
CAACTCGGTAGGAGTT	ref_5163_reverse	12	23	15	13	15	7	30	17	35	15
TTAGGGTGCCCTTTTC	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GCCCCTTTGTGTATTG	ref_5163_reverse	20	58	22	17	46	18	66	21	75	18
CGGAGTTCAGTTGATG	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
ATGGAACTTTTAGCGA	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GGGGACTCAAAATTCC	ref_5163_reverse	65	112	80	72	110	73	109	68	100	53
ACTCCGCATACACTTT	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GTCTCCTTTCTTCTCA	ref_5163_reverse	0	5	0	3	4	1	1	2	7	4
TGGCTCGGAACCCAGA	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTTGTGTTTCTTC	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GTGTTCACGCTAATGC	ref_5163_reverse	27	43	32	33	41	26	62	28	42	28
AAGCGTGGTCCTGTTA	ref_5163_reverse	13	26	22	19	30	16	21	13	25	13
TTAAGTGTGTGCAACG	ref_5163_reverse	28	61	32	26	56	44	58	26	55	28
TTAGATCTCCACGTTT	ref_5163_reverse	3	13	3	7	15	4	14	1	6	6
TGGGCTCCTTTTTCGG	ref_5163_reverse	0	4	0	0	0	5	2	0	0	0
CCCAGGTAAGCGGCTT	ref_5163_reverse	0	2	0	1	6	0	0	0	4	1
ACGCAGCATCCTATTC	ref_5163_reverse	46	90	62	63	89	38	90	33	91	39
ACTCTTTCGGACTTAG	ref_5163_reverse	3	3	6	6	5	10	6	10	8	11
ACGTTGGCAGGTACTG	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GGCACAAAGTTCTTCT	ref_5163_reverse	13	18	10	9	18	11	13	5	25	5
TTTATGATCATTTCGG	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
GCTAGTACGGGCCCCT	ref_5163_reverse	0	0	0	0	0	0	0	0	0	0
AGGAATAATTCACCGC	ref_5163_reverse	29	42	37	38	43	32	48	24	49	27
TTAGCTAGAGTGCAAT	ref_5163_reverse	7	18	17	9	16	10	16	21	27	10
TTAGGGAGGGCCAACG	alt_6039_new	26	28	24	28	29	37	35	32	42	18
TGGTATCCGTGGCGGT	alt_6039_new	24	28	30	21	22	19	21	24	31	15
TGGGACCATTCGATTC	alt_6039_new	27	45	45	43	61	56	61	28	67	34
CAGGTACCGAGTTCCG	alt_6039_new	0	0	0	0	0	0	0	0	0	0
TATACACCTATGAGCT	alt_6039_new	2	2	1	3	2	1	3	4	4	2
CGGGAGCGTGGGGCCA	alt_6039_new	34	30	33	38	34	26	37	29	42	35
ATCGAGGGACACTCTG	alt_6039_new	34	47	51	38	40	27	51	23	44	34
TCTTCTGTGAATACCT	alt_6039_new	6	15	5	14	9	9	11	7	5	10
TCGGGGCGTCCTGTTC	alt_6039_new	0	0	0	0	0	0	0	0	0	0
GTTAGGCTGCTATCCT	alt_6039_new	11	21	9	10	13	12	13	14	16	13
TATGTTTGTAGCCTTA	alt_6039_new	63	88	76	52	107	52	117	60	103	57
GGCGCTCCTGGAGTCA	alt_6039_new	7	10	10	10	11	4	15	10	18	14
CCCTACGTTCGACCGC	alt_6039_new	14	51	40	24	45	27	38	27	57	19
CAGGTTCATCGTAATG	alt_6039_new	9	16	10	3	7	5	16	5	9	7
GTCTTGGCGGTCTTTC	alt_6039_new	0	0	0	0	0	0	0	0	0	0
TGTGTTTAACAAAGTT	alt_6039_new	51	45	49	39	50	43	66	41	56	38
ATATAGGCTTCCTGTT	alt_6039_new	16	20	17	13	18	18	27	23	22	33
ATATTAGTACGGTGCC	alt_6039_new	7	15	15	13	19	7	15	18	16	12
ATTACGGAAGGCGTCT	alt_6039_new	181	200	194	178	194	153	196	181	210	161
ACTGCCACATTTTTGC	alt_6039_new	0	0	0	0	0	0	0	0	0	0
GCGGCAGCTGGTATAC	alt_6039_new	0	0	0	0	0	0	0	0	0	0
AACTGTGGCTTCGCCT	alt_6039_new	136	225	191	155	207	163	243	126	205	109
TCTAAAAAAGCTTTTT	alt_6039_new	14	36	18	12	17	15	11	17	18	12
TCTTCCGTCAACTTTC	alt_6039_new	77	85	78	67	60	71	86	44	63	55
CGCTACAAAGTCCACG	alt_6039_new	15	29	25	16	23	22	20	15	23	10
GTCACACTCGTCCACC	alt_6039_new	4	24	8	2	22	8	29	8	28	5
GCTCAAACTATATGGT	alt_6039_new	8	7	10	16	19	6	17	10	15	6
ATCGCAGTGTCTTCAC	alt_6039_new	44	57	29	45	49	31	47	19	52	33
CTTGCGTCATTGTTTT	alt_6039_new	17	26	24	24	32	19	32	24	34	19
GAGCTATTTACCCATC	alt_6039_new	87	59	82	69	56	67	66	58	64	66
TGTTATTGTGCGATTT	alt_6039_new	1	4	0	1	3	1	1	1	0	1
TGTTTTTGGGTCATAA	alt_6039_new	7	14	7	7	24	9	23	3	13	4
GAGCGGCTTTGCCAGG	alt_4534_missing	22	40	16	14	21	18	45	18	41	16
CTCATTCAGAATTAGG	alt_4534_missing	58	75	54	40	79	46	72	31	76	42
GTATGCACCAGTGATA	alt_4534_missing	16	42	26	24	38	20	39	21	28	15
GTCCTAGATGAAAACA	alt_4534_missing	83	121	160	81	107	111	156	86	140	59
CAATCCCTAGTCTATG	alt_4534_missing	37	129	40	33	90	26	95	27	105	29
CACGTTTTTTCGCCCC	alt_4534_missing	2	11	3	6	9	4	7	4	10	4
TCCCGGTTTTTTCATA	alt_4534_missing	4	4	1	1	7	0	7	3	0	1
TAGTGGATATATCTTA	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
ATGTTGTAACGTGCCG	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
GGTGAGGGTAAGTGTT	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
AGAACTGTTATTAGAC	alt_4534_missing	16	16	20	20	27	16	37	9	27	15
TCTTCCACCTATATCA	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
CGAGTTTCATGAGATC	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
ATTACTTCCGCATATT	alt_4534_missing	67	103	83	64	111	67	95	83	117	64
TGCCTTGAACCCTATT	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
AAAACCAAAAATCGCA	alt_4534_missing	6	4	7	5	7	2	5	7	8	3
ATGTCATTTGATGTGT	alt_4534_missing	18	23	28	29	17	10	36	27	17	15
TTGGCAGGTTATTCTT	alt_4534_missing	25	40	24	26	31	24	33	15	21	15
CTGACCGTGTCTAGCG	alt_4534_missing	3	4	9	4	4	2	8	2	3	2
TTCTTTTATGACTTTT	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
CGTGACCTAAACTGCT	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
TCTAGTGCACAAAGAA	alt_4534_missing	2	16	8	8	12	5	20	7	23	8
CATAACACCCAACCAT	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
CCTTTTTGATACGGGC	alt_4534_missing	30	58	37	24	74	32	70	30	57	22
GATGAATGACGCTGGT	alt_4534_missing	7	5	9	14	7	9	6	6	12	3
CCTTAGTTTGGGGTGG	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
TATCGGATATCCCATC	alt_4534_missing	0	0	0	0	0	0	0	0	0	0
GCTTTTCCCCATTGGG	alt_4534_missing	13	21	21	9	33	7	29	12	33	13
ACCGAGGTTCGGCAAT	alt_4534_missing	3	9	10	7	14	8	7	6	11	3
GGATTTATTAGCTTAC	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
ATACATAACGGATGGG	alt_4181_missing	0	6	6	3	0	3	4	1	5	4
GTAGCTGGACGTCAGA	alt_4181_missing	5	3	0	0	1	1	0	0	1	1
GTGTCCTTATTGCCTG	ref_4181_missing	1	5	0	3	5	0	5	0	8	2
GTTCACCCCGGCTTAA	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
TAATCCAAACGAGTTC	alt_4181_missing	1	3	2	0	3	1	2	1	4	2
GTAATGATGTAGATGT	alt_4181_missing	1	3	2	0	2	0	2	0	1	2
CAGCGCGCAATTTCCG	alt_4181_missing	3	8	5	3	9	2	12	1	14	1
AATCGGTCCGGTGTGT	alt_4181_missing	1	3	1	3	0	0	5	2	1	0
AGTTTGTAGAAGTGCT	alt_4181_missing	3	11	4	8	8	5	8	5	12	3
ACTCCTCCAAATGAAA	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
GAAGGAATGGTGTGTC	alt_4181_missing	6	10	8	9	13	5	13	7	6	4
TCCGCGTTCCTCTGTC	alt_4181_missing	8	5	4	3	3	6	6	0	13	5
CATCCTCCAGTACTTT	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
ATCTAGTGACCACATT	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
GTGTTATATAGAAGTT	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
TGACTCGTCATTGTCG	alt_4181_missing	2	4	0	2	6	0	6	2	1	1
TGTAGACAAACGGATT	alt_4181_missing	0	0	0	0	0	0	0	1	0	0
TTTCACCTGTATAAAT	alt_4181_missing	1	1	3	1	4	4	2	3	6	3
TATGGGACATCCTGCT	alt_4181_missing	1	9	8	5	10	2	10	6	9	9
CATCGTAAACACTTTC	alt_4181_missing	3	2	1	3	3	0	6	1	2	2
CTACTAACTGCGTATA	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
ATGGTCCGTAGTTTTT	alt_4181_missing	1	9	2	1	6	0	7	0	7	4
TCTTTGGCATGCTTCG	alt_4181_missing	0	0	2	2	0	1	1	2	3	0
GTATTAGTACCTCCCT	alt_4181_missing	0	6	1	0	8	1	12	2	12	2
TCAGTAGTAAAAAAAA	alt_4181_missing	1	2	2	1	6	0	5	1	4	0
TTTAGGAATTGGTGGC	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
CATCACCACATGATTT	alt_4181_missing	3	3	5	1	5	0	2	2	9	0
CGAAATTCGTTAAGAA	alt_4181_missing	2	3	2	5	6	1	1	3	4	1
CACCCGCGGTTCCTAC	alt_4181_missing	0	7	3	1	4	1	7	0	11	2
CTCCATTATTCCCCGT	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
GGAACAAATAGTATTG	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
TGTGTCTTTGCTGGGG	alt_4181_missing	5	10	8	8	7	2	8	4	14	6
CGGTGACTTCTCAATG	ref_4181_missing	7	5	8	5	8	4	10	5	12	0
TCGCACCCCGCCTTTC	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
GACTTTCCTTGATTTA	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
AACGTCCCACAACTTT	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
CATTTTTCTGTGTCAG	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
AAATTTTAGAAATAAA	alt_4181_missing	0	6	5	3	3	1	7	2	6	1
CTTAACTGTCTTTTAG	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
TTTGGCGCTCTGCGTA	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
GTCCACTTCACCGACA	alt_4181_missing	2	4	3	4	1	3	5	2	3	1
TTGCGCCGCACTCACC	alt_4181_missing	0	0	0	0	0	0	0	0	0	0
CCCTGCGGCCGACTCT	alt_548_upstream	158	131	177	147	132	162	125	140	116	137
GGTAGCACCATGCTCG	alt_548_upstream	206	165	294	249	168	222	170	195	186	196
TTACTCTACAGGCGGT	alt_548_upstream	6	5	6	8	13	3	5	2	4	4
GCTGAACGAGCACGAT	alt_548_upstream	112	74	122	100	108	90	77	101	113	98
GGGTAATGATGTACCA	alt_548_upstream	16	10	20	16	12	19	9	13	21	8
CTGTTTATTGAGCATT	alt_6005_new	11	15	26	15	18	11	23	7	17	27
CGTGGATTTCTGGCCC	alt_6005_new	37	33	45	56	50	27	60	45	50	33
TGAGTCGCAGTGTTGC	alt_6005_new	46	57	47	45	62	36	45	26	61	47
GTCAAAGTTCCGGTTT	alt_6005_new	0	0	0	0	0	0	0	0	0	0
CAGCTATGAGACTCTA	alt_6005_new	3	2	2	0	3	1	2	4	3	1
GGGCACTGTGCAACTA	alt_6005_new	0	0	0	0	0	0	0	0	0	0
GTTTACGCTGACTGGC	alt_6005_new	70	62	69	80	81	68	74	50	86	68
TTTCACGCACCGAATC	alt_6005_new	0	0	0	0	0	0	0	0	0	0
TCCTAGTCGCTTTACA	alt_6005_new	35	43	45	49	46	32	40	45	51	27
TTTCGCAATTCATATT	alt_6005_new	63	56	68	50	73	48	105	63	85	58
CGGGACGGCAGCTCTT	alt_6005_new	8	14	9	10	7	12	13	8	8	9
GTCTACATTATTCGTT	alt_6005_new	0	0	0	0	0	0	0	0	0	0
TTGGATCTTACATGCT	alt_6005_new	16	17	12	16	15	18	13	12	18	13
CTAGCCATATGAGTAA	alt_6005_new	1	4	2	5	5	5	3	4	2	4
TGAGAGTAGGACTATC	alt_6005_new	29	31	21	12	28	28	30	24	20	27
CCTACATAACGGCATA	alt_6005_new	15	18	15	10	13	23	10	9	19	19
AGTGTGATTATGATCG	alt_6005_new	0	0	0	0	0	0	0	0	0	0
GGCGGGCCATCTGCAT	alt_6005_new	70	118	98	82	115	92	135	52	136	59
GTCTGACGGGCTTTAT	alt_6005_new	51	73	72	45	87	49	79	50	83	51
CAATTTTTTTCCCTCT	alt_6005_new	0	0	0	0	0	0	0	0	0	0
ACTCGTGCCGTATTGT	alt_6005_new	94	132	118	106	133	98	118	94	140	79
TCGCCTCTGACTTATG	alt_6005_new	0	5	3	3	2	1	6	0	4	5
TTAATTGATGCAGGAA	alt_6005_new	0	0	0	0	0	0	0	0	0	0
TGCCCTCGCCTGACTC	alt_6005_new	37	60	42	45	57	43	50	26	55	28
CGCCAGCGTGTGGCTT	alt_6005_new	22	43	21	25	29	29	31	29	30	25
CGAAACGGGATGTGTC	alt_6005_new	3	4	2	1	3	3	0	0	2	3
CTTAAGTAACAGTGGA	alt_6005_new	30	31	37	34	30	30	33	38	38	34
GTGATTGGGGCTGGAC	alt_6005_new	0	0	0	0	0	0	0	0	0	0
AGAGAGTATCTTACAG	alt_6005_new	0	0	0	0	0	0	0	0	0	0
CAAGGGCCAGTCCTAG	alt_6005_new	20	11	10	13	16	6	18	11	17	7
TCAGCCAATCTTCTAT	alt_6005_new	0	13	3	0	14	7	12	1	25	3
GTACGGCGTATATTTA	alt_6005_new	72	69	96	76	64	71	74	60	92	63
CTTGCGTATAATGGGG	alt_6005_new	11	21	25	15	23	21	19	16	17	12
CGTTGTTTTCGGACAA	alt_6005_new	66	98	78	52	66	44	76	64	88	34
ACCACGAAAATTTTAC	alt_6005_new	0	0	0	0	0	0	0	0	0	0
TGCTCCATACATAGAA	alt_6005_new	25	45	39	22	31	26	49	20	37	22
GCTGTTTGATATCCTT	alt_6005_new	4	2	4	4	3	9	6	5	4	8
CTATAGATCTAGGTTT	alt_6005_new	0	0	0	0	0	0	0	0	0	0
ATGTGGCCCCTCGGCG	alt_1903_fdr	50	19	52	37	17	42	13	33	30	36
CTTGCCTAGGAGCTTC	alt_1903_fdr	21	7	23	17	6	18	21	13	10	18
GTTCCTGTAGAATCGG	alt_1903_fdr	22	2	13	10	5	12	3	16	6	5
GATAGACCTCCGGTCT	alt_1903_fdr	108	39	104	79	63	87	39	82	56	95
CAGGGACCTGTTCTGG	alt_1903_fdr	203	139	297	199	130	233	119	200	159	209
CAGCTATGCATGACTA	alt_1903_fdr	87	53	130	70	55	86	57	89	57	91
ACGGTGAACGATATCT	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
TCACCATAGTCCTAAC	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
TTTTCCTCGCAGTAGT	alt_1903_fdr	30	7	22	15	14	26	15	30	17	29
GTAAGATTTGATGGGC	alt_1903_fdr	62	39	69	52	29	82	33	46	29	56
ATACAACTGTCGAGGC	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
GAGTCGTGAGCAGCCA	alt_1903_fdr	111	33	128	70	50	117	57	83	35	110
CACCGCCTTTCCGCCG	alt_1903_fdr	19	21	27	17	28	24	21	12	25	16
GTACTTGTGCGCTGGC	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
CTGGATTACTCAGTGC	alt_1903_fdr	10	5	12	16	3	14	6	8	4	20
GAGCCGGGCGGATTTG	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
GTGTTGAATACCCGTG	alt_1903_fdr	108	57	134	95	44	111	58	90	52	104
CTGTTTGCAAATGCAT	alt_1903_fdr	10	4	10	10	5	5	3	12	3	6
GGTTTTCATTTGGGGG	alt_1903_fdr	127	75	160	120	62	147	61	92	63	101
AAGTTCATGGACCGTG	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
TGAATGCAGTATACTA	alt_1903_fdr	29	14	26	27	15	27	9	30	17	27
GACTTGCATGCTTGAA	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
CCGTGAGTATAGTAAT	alt_1903_fdr	65	33	59	55	32	64	22	56	28	63
TGGGGTGTTGCACGTG	alt_1903_fdr	96	51	114	92	47	102	57	87	50	105
CTATCGAGGTAGTACG	alt_1903_fdr	104	36	114	79	54	92	60	89	43	87
ACGGTACCTCTCTTTT	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCAAAGCATTGCG	alt_1903_fdr	36	18	38	23	19	31	12	27	26	33
CTTCCATATTAACTCG	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
CGGCTGATCTTCGGTT	alt_1903_fdr	140	58	155	130	70	172	64	146	79	143
ATTGTACAACCAGTGT	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAAAGGTACTTGA	alt_1903_fdr	0	0	0	0	0	0	0	0	0	0
TATGGTTAGCCGCTAC	alt_1903_fdr	69	40	81	66	38	74	31	56	63	55
TCTTGCTTCCCGGTTT	alt_1903_fdr	24	11	27	7	7	20	12	20	10	12
TTGTCCTAGCCTCGTT	alt_1903_fdr	108	50	138	81	59	101	55	109	58	100
TGCGGGGTATCCGAGC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
ACTGGAGCTTTGCCAC	alt_5700_new	15	29	24	29	21	15	33	24	35	28
GGGGTTGCATTTGGTG	alt_5700_new	38	74	48	80	75	38	78	41	73	33
GTCTGCTTATAATGCG	alt_5700_new	30	47	34	25	30	19	47	16	31	21
TAAATACGCGGGGCTA	alt_5700_new	0	0	0	0	0	0	0	0	0	0
GCACTGAGGCTGATTC	alt_5700_new	45	55	53	54	59	51	49	35	59	38
TGCTCTCAGTAATAAT	alt_5700_new	63	86	108	87	89	77	97	56	117	82
TTGTTATCGTCATTAT	alt_5700_new	41	43	66	38	58	50	56	38	56	44
CGTTATCTACTTTGGG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TTGCCGCCACAAATAG	alt_5700_new	16	29	21	16	30	26	31	11	31	23
TTTTGAGCATGGAAGA	alt_5700_new	7	13	10	14	21	19	21	8	6	10
TTTGTAGTTTTTGATA	alt_5700_new	85	132	121	97	118	90	145	79	120	70
TTATATTCATACAGGT	alt_5700_new	29	62	31	22	62	33	54	22	55	34
CGCTGGTTATGATTCG	alt_5700_new	97	154	159	129	136	120	139	111	156	100
TCATACAGTGTCGCGA	alt_5700_new	4	22	5	2	15	7	18	8	13	8
ATAGGTTCGGGTATTA	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TTTATCGCTTATGCCG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
GACATTAGCCGGATTT	alt_5700_new	8	14	12	15	21	4	17	11	19	7
TGTTACGTAAGTTTAT	alt_5700_new	3	14	10	8	7	13	12	4	15	12
CATCATGAATAGGTTA	alt_5700_new	0	0	0	0	0	0	0	0	0	0
AGAACTCGCCGAGAAG	alt_5700_new	9	12	17	12	23	6	17	12	14	10
ATGGGATCTGTTGCGC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
GCTTTCCTTTCAGTCG	alt_5700_new	6	16	16	14	20	18	4	10	20	10
TGTCATATCCACTCGC	alt_5700_new	15	14	11	7	11	14	9	9	18	8
ACTTTCATGGCCATAC	alt_5700_new	6	18	12	10	10	12	16	7	22	7
TTGCATATAACGAAGT	alt_5700_new	40	36	39	24	45	30	31	35	41	32
AGCAGAACAGCCTCCT	alt_5700_new	23	19	24	19	32	14	22	18	34	11
GAGTCAGATTCTCCGC	alt_5700_new	13	21	27	22	21	16	23	14	24	8
TGCCCGATGCTTTTTG	alt_5700_new	66	77	72	62	93	53	62	49	106	51
GTTATTGGCGTTTCAT	alt_5700_new	1	4	0	0	1	2	0	0	2	0
TCCTAAGACATACCGT	alt_5700_new	12	35	15	20	25	29	24	14	32	15
TCATTATAAACACGGC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TCGCTTAGGCCATATT	alt_5700_new	5	11	11	11	9	9	5	4	8	10
TGCAATCAGAACTCTT	alt_5700_new	195	285	230	185	307	214	308	195	306	219
TGGGAAAGCTCTTTAA	alt_5700_new	0	0	0	0	0	0	0	0	0	0
GCAACTATGCTTGTCC	alt_5700_new	7	12	4	8	11	9	14	9	13	7
TAGGACACCGGTCAAA	alt_5700_new	42	51	55	43	60	34	61	45	56	31
GCATATGTCATCAAAT	alt_5700_new	0	2	1	0	1	5	3	5	2	1
ACGGTGTATCCATCCC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
CGGCGACTAAAATGTT	alt_5700_new	17	11	26	10	9	16	23	24	20	13
GCAATCGGGGGCGATG	alt_5700_new	41	56	49	44	28	50	55	36	50	31
CCGTGACTGTTATATG	alt_5700_new	35	19	22	20	22	17	20	15	43	16
TTAGAGGTAACCCCCG	alt_5700_new	58	57	77	69	88	60	73	64	71	60
GCGAACCGGCGATTGC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TGTACCCCGTGCCGTA	alt_5700_new	37	52	73	52	69	59	59	43	67	43
CGGCCGAGGCTCTCCT	alt_5700_new	1	17	3	1	21	0	9	1	16	1
TCTTTTTCTTCGGTGT	alt_5700_new	59	89	89	74	114	94	98	66	102	83
ATTCCTATGGCGACTG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
CATGAAATCCTACGGG	alt_5700_new	34	54	49	48	50	50	54	57	56	46
CAGTAAGTTCCGCGTT	alt_5700_new	0	0	0	0	0	0	0	0	0	0
CCAGATTCACGGTCGG	alt_5700_new	13	35	20	26	45	14	48	24	35	15
TTTATCCTTTCGACTA	alt_5700_new	0	0	0	0	0	0	0	0	0	0
CATTAGCGTCAGTTTA	alt_5700_new	0	0	0	0	0	0	0	0	0	0
CCCCCTCATCATGGTG	alt_5700_new	2	11	5	0	14	1	7	2	10	0
GGAGTATGTACCCTGC	alt_5700_new	27	25	35	21	55	13	43	11	31	22
ATTTTGGAGGAGAACC	alt_5700_new	42	49	83	49	69	46	68	47	66	59
GTGTTATCATCTCTAT	alt_5700_new	183	234	200	184	270	179	260	148	247	136
TACCCTACGCGGGCCG	alt_5700_new	33	22	30	29	33	30	43	29	35	30
GCGAAATTGGCCCTGG	alt_5700_new	26	31	52	32	43	27	31	31	52	41
GGCTCTCACACTAGGT	alt_5700_new	3	1	3	9	3	4	0	6	10	5
CTCCCCTGTAGGGCAG	alt_5700_new	18	108	35	24	112	26	118	25	107	29
ACGCTCATGGATGCTG	alt_5700_new	39	48	44	33	45	48	51	32	54	33
TTGCCGCCGGCGTTGT	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TCTTGGTTGTAAGTTC	alt_5700_new	51	99	80	69	118	46	98	65	85	53
TTGACGCCGGCGTTGT	alt_5700_new	168	320	212	185	271	173	290	163	293	143
TGTAATTCCGTTGACA	alt_5700_new	34	59	53	47	75	35	63	37	80	21
GATTCTGGGTATTCTC	alt_5700_new	264	331	322	266	348	251	319	233	335	255
GACTCGCAGTACCTCT	alt_5700_new	1	0	0	0	0	0	0	0	0	0
GATTCTAGTCCCTAGC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TTTCCTTGATTAGTCT	alt_5700_new	32	42	41	42	43	32	56	24	55	31
TCGTCCTCCTGTATTC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
GGAATGCGGGTATCGC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
CCGTATCGAACACTCA	alt_5700_new	12	10	5	4	14	5	6	7	10	6
AAAAAGAATAGTGGCT	alt_5700_new	20	31	34	25	28	30	44	24	31	17
TCCCTCCAGCGTTAAG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TGTGACTGCTACGTGT	alt_5700_new	2	4	4	7	0	2	2	1	8	2
TAGTCGTTCGTGTTTA	alt_5700_new	5	7	9	10	27	8	9	8	15	8
TTCGGCAGATTACAAT	alt_5700_new	0	0	0	0	0	0	0	0	0	0
GACACCCATAACTACA	alt_5700_new	196	260	216	185	245	174	244	173	289	162
CAGATATACTCCGCAT	alt_5700_new	6	9	3	9	18	5	11	5	15	6
TGCACGTCTTTTTAGC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TGCCAGCCTGCGCCCG	alt_5700_new	12	32	13	14	40	19	50	7	43	14
ATAGATATTGGCTCGC	alt_5700_new	3	11	12	15	13	16	17	8	14	7
TATCTAGAAATGCGAT	alt_5700_new	0	0	0	0	0	0	0	0	0	0
AGATTACTCCTCGTCT	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TGACAACATGATTCTG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TGACCCCGCGTAATAT	alt_5700_new	4	5	4	5	5	1	5	1	11	4
CGGCCGGGCACCATGT	alt_5700_new	28	46	25	23	29	17	28	28	41	17
TCTCCGTCTAGTAGCC	alt_5700_new	4	3	0	0	6	0	4	1	5	1
TCCACTGGTAATGTTC	alt_5700_new	0	0	0	0	0	0	0	0	0	0
ATCTGGGAGTCATACG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
AACATGCATCTTTCTT	alt_5700_new	53	89	56	57	82	54	83	56	89	54
GCGTATTTTTGTTTTG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TAAAAGTATACTTAAT	alt_5700_new	41	61	44	47	55	43	67	39	48	49
CGAAAATCCACCTTGA	alt_5700_new	5	6	3	5	9	2	8	4	8	3
GGTGGGTTAAATTAAG	alt_5700_new	45	55	30	46	60	30	56	49	49	41
GTAGGTACGCCAAAAA	alt_5700_new	5	5	4	1	8	5	9	5	15	6
CTCGCCCATGAGTTAC	alt_5700_new	48	76	53	46	50	46	63	39	72	49
CCGCGCCCTCAGCGGT	alt_5700_new	3	7	3	0	3	1	9	4	8	4
TGTTTTGCCGTCTCCG	alt_5700_new	79	76	109	100	82	87	107	76	92	57
TGCGTCACATGTTTGG	alt_5700_new	0	0	0	0	0	0	0	0	0	0
TTATTATGTGCTGAGG	alt_3703_missing	0	0	0	0	0	0	0	0	0	0
AATTCTGCGATATTTC	alt_3703_missing	1	1	2	2	1	2	0	5	5	2
ACGAACATTGGTATGA	ref_1720_fdr	60	50	48	41	51	41	52	44	52	48
ACGCTCGCTCTATGTT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
CCACTAAGCGTTAACT	ref_1720_fdr	20	41	28	35	37	15	48	20	65	24
TGTACTGCCTAAAGTT	ref_1720_fdr	38	43	36	34	46	32	33	39	37	40
TGCGTTGCTATGTTTA	ref_1720_fdr	181	139	185	152	126	127	132	125	169	139
CGCTGCTAGCCTGATA	ref_1720_fdr	74	97	99	92	64	77	82	67	91	72
TGAACGTGACTTCAAT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
AGGCTCGTTCACCCAT	ref_1720_fdr	22	16	28	27	19	29	34	20	39	15
TTACGAACATTTGTAC	ref_1720_fdr	19	19	18	24	19	18	27	14	24	16
TGGCATCTATTGCTTC	ref_1720_fdr	19	38	19	23	23	20	28	20	27	20
GTCCGTTTAGCTGATT	ref_1720_fdr	3	0	5	0	1	0	1	4	1	0
GTTCCAGTTGAAAGCC	ref_1720_fdr	22	16	17	21	38	11	20	12	26	19
TCGACGATAAGTCGTT	ref_1720_fdr	15	19	24	27	18	14	20	14	26	24
ATGACTTGATTTCGTA	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
TTCTCTGAACAATGTT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
TGAACGTGATTTCGAT	ref_1720_fdr	18	19	22	20	12	10	27	17	12	17
GAGCGACCGGCCAACA	ref_1720_fdr	24	25	25	20	17	31	22	21	22	18
CGGAGAGCGCACAACC	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
TATTTGAAGCGTGTGT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
TTATTATGTCATCCCT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
CGGCGTTGCTGCAAGG	ref_1720_fdr	15	14	15	23	9	10	11	14	18	11
TTGGCTACGGGAGAGC	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
TCCTTGGCTATCCGAT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
TGTTATGCAAGTCAGT	ref_1720_fdr	10	4	4	8	12	14	11	7	7	6
TCGTGTCGTCATTGGG	ref_1720_fdr	8	5	10	12	10	9	5	5	13	5
TATAAATAGTTTGCAC	ref_1720_fdr	70	56	90	66	59	58	69	54	72	58
ACGGGTCCGACGTCGT	ref_1720_fdr	3	7	3	3	3	5	6	2	7	3
GTAAATCTCTCACTCA	ref_1720_fdr	16	14	14	13	23	14	17	13	18	15
AGTGCACCTTCAGAAG	ref_1720_fdr	1	1	2	2	3	3	3	0	1	1
CCGCCCGTGCCATCTA	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
CCTTAATTTCGGGATT	ref_1720_fdr	16	10	15	12	15	16	19	11	15	9
GCACCTTACTTGCTTT	ref_1720_fdr	161	162	215	195	198	155	179	156	208	168
ACGTCACGTACTATAT	ref_1720_fdr	15	11	19	11	8	12	12	15	14	9
CCTATTGGGGGATATC	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
CTCGCCTTATTGTTGA	ref_1720_fdr	20	46	28	32	47	26	47	21	55	20
GTTCTCCTCCATCCAC	ref_1720_fdr	27	28	45	25	27	40	24	29	36	29
AATCGCGGAAGTCGTA	ref_1720_fdr	45	22	53	42	32	31	35	30	26	30
CGCACAATCCAAAGGG	ref_1720_fdr	3	0	0	0	1	1	0	0	3	0
CACTTCTTTAATCGAT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
GCGGCTTTCCAGCGAC	ref_1720_fdr	7	23	23	17	13	19	19	17	18	6
ACGTGTTGTAGTTCGT	ref_1720_fdr	0	0	0	0	0	0	0	0	0	0
GCAGAGTATTCTCGGT	ref_1720_fdr	8	9	13	8	9	9	10	13	8	6
TGCAGTCTAGCGGTCA	ref_1720_fdr	63	64	75	57	67	65	80	56	77	85
AATTAGCTTGTTCCGT	ref_1720_fdr	22	28	39	37	35	35	30	31	40	24
GTTAGTTGAGTGCTCT	ref_1720_fdr	2	2	4	5	0	1	8	0	3	0
TCTTTGATCGTTCTCT	ref_1720_fdr	61	63	54	63	73	59	61	61	68	55
TTCACGTCGCAACTAC	ref_125_missing	0	0	0	0	0	0	0	0	0	0
CCACGCTGGCCTTCTC	ref_125_missing	21	65	39	48	70	34	79	33	90	24
AGATAAGCATACCACC	ref_125_missing	24	17	40	35	15	33	24	41	12	32
TGTATTCTTCGGTGTC	ref_125_missing	36	34	75	40	15	39	25	35	23	36
TCTTAGGTCAAGTCTT	ref_125_missing	29	17	28	26	18	14	17	22	19	17
CTCCTTGGTGCTCGCC	ref_125_missing	28	12	36	29	11	33	27	35	14	20
TTTATGTAGGTAAGCC	ref_125_missing	180	133	230	203	102	141	139	192	122	175
GCTTGTTACCGCCCCC	ref_125_missing	0	0	0	0	0	0	0	0	0	0
TTCTATGATATGCCTG	ref_125_missing	0	0	0	0	0	0	0	0	0	0
GAGTCCGACAGTAAAT	ref_125_missing	24	20	30	41	24	34	21	34	19	23
GCCTCTTAATTGGTGG	ref_125_missing	30	30	48	40	32	33	29	39	31	40
TCCTCGCGTAGTCAAC	ref_125_missing	33	21	42	35	30	32	21	28	33	20
TACTTACAGAGGCGCA	ref_125_missing	83	76	144	100	68	81	83	106	89	95
AAGCTCAGCCGTGTAA	ref_125_missing	32	30	56	53	46	48	41	33	35	50
TGAATCACGTTCTCAC	ref_125_missing	46	40	78	70	38	60	41	61	42	69
TAATACACCGCTTTAT	ref_125_missing	0	0	0	0	0	0	0	0	0	0
ACCTTTGGGTAAGGTA	ref_125_missing	4	4	13	1	4	5	8	5	6	6
TGACGGCCGTCAACGA	ref_125_missing	27	18	36	25	19	22	11	25	16	33
TTACTCGTTGAATGTT	ref_125_missing	0	0	0	0	0	0	0	0	0	0
TGAGCAGCTATGCGTT	alt_5886_new	2	12	6	7	12	5	5	5	9	3
ACAATTATATTGCCAC	alt_5886_new	7	8	3	1	10	3	9	2	13	3
TACCTTCCGAGTTGTC	alt_5886_new	27	63	37	19	56	26	62	36	56	24
GGCCAGGTTGCAGTTT	alt_5886_new	11	18	10	6	30	13	29	8	22	7
CTCGGAGGCTGAAGAT	alt_5886_new	4	6	6	9	7	2	3	2	12	4
AGCTCCAGATACCGGA	alt_5886_new	1	0	0	1	8	4	6	5	7	1
GTAAAGCGTACTGGTT	alt_5886_new	5	20	10	6	15	14	19	8	19	10
AATCAGCGTAAGAAAC	alt_5886_new	0	0	0	0	0	0	0	0	0	0
CGGCGCTGCTCACTTA	alt_5886_new	28	48	29	25	42	25	56	26	67	22
TCAGTAAATTCTTACG	alt_5886_new	15	35	24	20	30	26	34	13	30	12
GATTGCCTGCTTCAAC	alt_5886_new	3	3	9	7	11	6	15	2	12	9
GGTTGTTATTTTATTA	alt_5886_new	4	27	12	16	25	10	22	8	17	10
CCTCCCTCCGACTTTT	alt_5886_new	9	17	7	17	19	9	30	8	29	11
TTTGCTTTTTATGGTA	alt_5886_new	8	19	7	4	15	6	13	6	17	12
TTTTGGCATGTATTTC	alt_5886_new	2	0	1	0	3	0	0	1	1	2
TCACTTCGCTTAAGTG	alt_5886_new	0	0	0	0	0	0	0	0	0	0
TAACGGGGCATCGAAG	alt_5886_new	2	9	2	1	9	2	14	7	9	5
CGTGTAAATCGAGCGG	alt_5886_new	3	9	5	6	4	6	8	4	13	2
TGTGTATTTGAGCTAC	alt_5886_new	10	32	10	9	16	12	27	10	21	8
GCTCTCACAAAAGCAT	alt_5886_new	2	1	1	4	1	4	2	2	2	1
TTTATCTATGTCCTCG	alt_5886_new	5	2	7	4	10	5	4	3	6	2
GACGTCGTTTTTCTTG	alt_5886_new	0	0	0	0	0	0	0	0	0	0
CTTGAAGAACCGTCTT	alt_5886_new	0	0	0	0	0	0	0	0	0	0
TAGCATTACGTGGTCC	alt_5886_new	30	42	28	27	61	21	55	18	50	23
CCGGCTTAGGGAAAAA	alt_5886_new	3	17	9	9	10	6	13	4	26	4
TTAAGTAATCCTTTGT	alt_5886_new	0	0	0	0	0	0	0	0	0	0
AGCCTTCTAACCGGTA	alt_5886_new	9	15	3	13	9	3	18	4	10	4
TTGCATTGGGCTATTA	alt_5886_new	0	0	0	0	0	0	0	0	0	0
TGCTGATTTATTCGGC	ref_461_RC	5	7	12	9	10	8	8	9	9	7
GTGCCTTCGCCTTAAA	ref_461_RC	0	0	0	0	0	0	0	0	0	0
GTGTGCGAGGTATCCA	ref_461_RC	88	99	124	95	94	102	129	106	90	91
CGAGCTCAACACGGTG	ref_461_RC	26	30	48	33	34	31	38	33	26	37
ACCGCGGGTCCTATAG	ref_461_RC	0	0	0	0	0	0	0	0	0	0
GCCAGTTGCACGATTT	ref_461_RC	0	0	0	0	0	0	0	0	0	0
AAGCTCGATCGGCAAA	ref_461_RC	7	6	4	10	8	2	13	8	6	6
AATATCAAGTTGTAAG	ref_461_RC	29	23	30	33	24	39	29	32	35	32
GCGTAGGCTTTGACCC	ref_461_RC	23	30	40	25	32	41	23	36	34	35
TCATGATCGTTTGTAT	alt_4360_missing	59	114	81	48	90	56	117	58	120	53
ATTTACGGATGTGTAG	alt_4360_missing	18	31	28	29	42	18	51	17	43	21
TTTCGACTTATGCCTC	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
GGTTCTTGCGGTATTT	alt_4360_missing	6	5	4	1	4	2	5	2	3	2
TAAGACTTGCAAACTT	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
TTCCCAGGAGTTCTCA	alt_4360_missing	5	13	7	10	21	8	14	10	12	3
CTACCTCTACCGGTAT	alt_4360_missing	23	33	32	36	33	15	42	16	36	23
GGCTCCGACTCGATAA	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
TTCCTGTTGAACCGGT	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTGTACTATCTA	alt_4360_missing	5	10	7	6	17	5	10	3	6	3
TTGACGTATCTAGATA	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
ATTCACTCCTCTGGGC	alt_4360_missing	8	29	7	5	39	5	27	5	44	2
GTTTCCCTTATTCAGG	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
ATCGGTCCTAGTAAGG	ref_4360_missing	23	23	7	10	12	11	16	9	26	8
CTGGCTAGGGTCATCC	alt_4360_missing	8	25	16	9	20	12	19	11	15	12
AGTTGATCCGCACCAG	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
GTCGCCCTGCCCCTAC	alt_4360_missing	12	11	14	8	13	10	11	7	17	4
TGAAGTCTCTGTATTC	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
GTACACTGCCCGGCGG	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
CCCCCTTATGTCTGCT	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
CTGGGATGTCCTGATC	alt_4360_missing	65	98	89	90	103	75	95	56	101	63
AGCGTCGATCAGCTTT	alt_4360_missing	0	0	0	0	0	0	0	0	0	0
CACTCTCTCTTTCGCG	alt_588_upstream	46	12	23	24	17	14	23	29	19	15
TTTCGCTCTCATTATC	alt_588_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGCGGTTGATACT	alt_588_upstream	109	35	124	95	31	95	40	100	30	84
TCATTACTTGAAACGT	alt_588_upstream	56	31	80	69	14	62	17	60	28	56
TGTCTGAGGGTCTCGG	alt_588_upstream	0	0	0	0	0	0	0	0	0	0
CGTCCGAATACTCTGA	alt_588_upstream	77	37	79	93	33	71	27	76	30	59
AGGTATGCTCGCACCA	alt_588_upstream	320	113	346	346	122	307	130	341	123	299
CATAGCTTCTCGCGCG	alt_588_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCCAATTTGAGCC	alt_588_upstream	140	54	137	136	60	98	61	103	59	112
ATGGGCAGCCTTCTCT	alt_588_upstream	401	104	495	422	134	372	150	378	116	359
AGGTGGAGCATATATC	alt_588_upstream	83	44	103	111	18	109	41	104	34	74
TCCAGGTATGGTTATA	alt_588_upstream	39	9	37	28	12	38	6	33	18	28
GCACACTTCACACACT	alt_588_upstream	0	0	0	0	0	0	0	0	0	0
GAGAGATCCCGCGAGG	alt_588_upstream	306	110	370	320	102	279	98	288	98	272
TCGGATCATCCGGTTG	alt_588_upstream	0	0	0	0	0	0	0	0	0	0
TTTCTCGAGTCTTACG	alt_588_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGGTCGTAATCGA	alt_588_upstream	78	36	70	49	34	49	25	41	35	52
CCCTCATTTGAGCCAT	alt_588_upstream	0	0	0	0	0	0	0	0	0	0
TGGACATGATGTGACA	alt_588_upstream	257	91	293	256	74	224	94	213	86	184
TTTTTCTTCCTTAGCT	alt_588_upstream	257	75	355	298	66	264	60	261	90	234
ATTTCTTAACGGTGCG	alt_588_upstream	660	177	810	802	239	678	237	648	206	586
GGCTCTTAAAGGATCA	alt_588_upstream	437	125	493	384	107	357	140	319	152	345
AATCGGATCACTCCAT	alt_588_upstream	48	15	56	61	22	43	12	39	14	41
ACTGGTAACTTTATCT	alt_588_upstream	79	35	87	103	24	76	23	79	37	65
ACTGAACTACGTTTCC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
TAGCGCACTGTCCTCG	alt_5855_new	4	14	5	6	11	6	8	4	6	2
AAGCTCATAATTCATA	alt_5855_new	0	0	0	0	0	0	0	0	0	0
TATCTAGAACAGTTGA	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GGATCTCACAACCCGT	alt_5855_new	0	5	0	1	8	1	5	2	2	4
AGCATGTTGTGCTGAG	alt_5855_new	1	2	3	1	1	1	0	0	2	1
CTATTGTTCCGTTATC	alt_5855_new	3	8	3	0	10	3	6	4	7	1
CATCTAACGGTGGCCA	alt_5855_new	4	9	7	3	10	4	7	3	4	7
CTTCGCTTCCAGGTAT	alt_5855_new	4	14	10	7	14	3	8	7	11	5
AGGTAAGAGGATGTTT	alt_5855_new	8	19	12	8	30	12	15	8	17	4
CCACGAAGGACAATCG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
ATGCCCCGGTTGTGCC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GAGATCGGCTCTGCCC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GGGCTACCTCACGTGA	alt_5855_new	12	20	12	4	25	6	17	7	26	10
CGTGACTTTTGCTGCC	alt_5855_new	26	51	31	23	56	34	55	23	52	28
TTCCCAATGTACGATC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GGATGTGGTAGGTTGC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GCCACTTAATTTCTGA	alt_5855_new	0	3	5	1	8	4	5	5	6	2
GTCCGCTCTACCTGTG	alt_5855_new	10	24	12	8	28	11	30	12	33	17
CACGTTATTTTCTGGC	alt_5855_new	11	19	20	10	20	7	16	9	21	19
CATCGTTCGGCTGGAA	alt_5855_new	0	0	0	0	0	0	0	0	0	0
AGACGACCCACAGCGC	alt_5855_new	0	1	2	0	2	0	0	1	4	4
CGGCATTGTACAGGTC	alt_5855_new	0	0	1	1	0	2	2	2	1	1
CTGATACCCTCCCTCG	alt_5855_new	7	16	7	4	26	6	13	8	19	7
GCTAACCCTCCTAAGT	alt_5855_new	6	26	16	21	33	8	36	10	25	10
ATCTTCGATGATTTAA	alt_5855_new	1	5	3	0	6	1	1	1	4	1
TATACCGGTGCGGAGC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GTTTGGCTCCACCTCG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
TACCCGTCCGCGTACT	alt_5855_new	1	2	3	1	10	1	1	1	2	2
CTGGCTCAAGTTAAAG	alt_5855_new	24	39	26	36	42	29	41	20	50	18
TCTTCGTATATGTCGC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GGATTATCTCGCTTCG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
TACAGTCTCACCCGGG	alt_5855_new	8	16	12	11	20	12	16	10	12	6
CAATGTCCAGTCGTCG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
CAAGCCCGGTCCAACG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
CTTGTGTTTATATGCC	alt_5855_new	50	60	57	37	58	47	87	31	83	46
TTTGTGTACCCCTGTG	alt_5855_new	13	18	16	6	23	11	12	7	18	8
CGACCCTTTGGTACAG	alt_5855_new	5	9	9	9	9	3	15	6	8	3
CGGGGAAGTGCCTCGC	alt_5855_new	33	93	74	60	98	52	98	54	94	40
ATGTCGTTCACTAGAA	alt_5855_new	0	0	0	0	0	0	0	0	0	0
CGCGACGTTTACAATT	alt_5855_new	0	0	0	0	0	0	0	0	0	0
CAACGTGGTAAGACCG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
CTTTGAAGGTGTGCGG	alt_5855_new	0	8	1	0	3	1	2	1	8	1
CGCGTATCTTACGAAT	alt_5855_new	0	0	0	0	0	0	0	0	0	0
ACAGCCGGTTCGTATT	alt_5855_new	26	56	29	38	37	29	52	27	53	25
TCCGGACGAATTGGAT	alt_5855_new	0	0	0	0	0	0	0	0	0	0
TCCCGGTAATGCATAC	alt_5855_new	1	2	2	1	2	3	5	2	5	1
GGTATAACATTAATTG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
TCTCCGTCTAGCGCCC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
CAATCTAGAACAGTTG	alt_5855_new	0	0	0	0	0	0	0	0	0	0
CAGCTCTAAAAATATT	alt_5855_new	6	6	4	3	4	1	3	2	6	1
GCACAGCCTCGGCTAC	alt_5855_new	0	6	4	2	0	1	2	7	2	2
TCATCATTGGTTGGCA	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GTTAGTAGAACCGGGC	alt_5855_new	0	0	0	0	0	0	0	0	0	0
GGATCGATCCGAAGCT	alt_5855_new	29	20	26	22	54	17	31	18	35	23
GATTGCCGCGTATCTT	alt_4301_missing	42	43	51	20	30	35	43	39	55	24
CATCGCTGCACTGGTT	alt_4301_missing	64	56	64	49	50	45	58	53	90	47
TTTTGTTGGCATACCG	alt_4301_missing	0	0	0	0	0	0	0	0	0	0
TTGGTTTCTTGGTACT	alt_4301_missing	3	7	2	4	2	5	7	2	7	4
CATTTCCGTGGTTCAT	alt_4301_missing	0	0	0	0	0	0	0	0	0	0
TTCAGAGTTTTTTGAT	alt_4301_missing	0	0	0	0	0	0	0	0	1	0
CTACGGCACTATCTAA	alt_4301_missing	22	46	36	24	34	37	30	27	24	29
CCGACTTGTCAGTGTC	alt_4301_missing	0	0	0	0	0	0	0	0	0	0
CGTGACCCACGTCCAT	alt_4301_missing	25	32	26	25	37	16	32	24	26	19
GGTAAGCTAGAGGGCC	alt_4301_missing	219	258	291	221	239	248	244	217	250	234
CATGTCGATAAACTTG	alt_4301_missing	0	0	0	0	0	0	0	0	0	0
CAGTGGTTATTGTGTT	alt_4301_missing	24	30	29	32	42	26	42	22	33	23
GTTTCCGGATCTAGGG	alt_4301_missing	18	16	26	20	12	17	24	17	21	14
TTGGCCACTCACAATG	alt_4301_missing	0	0	0	0	0	0	0	0	0	0
TACACTGGACTCTTTC	alt_4301_missing	27	31	23	14	31	28	28	29	30	25
TTGTTTATCCTTTAGG	alt_4301_missing	0	0	0	0	0	0	0	0	0	0
TAGGTTTGTTTAGCAT	alt_4301_missing	36	57	39	37	47	26	38	30	49	28
CACATACCCTGTTCTT	alt_4301_missing	0	0	0	0	0	0	0	0	0	0
ACAACTCTGTGCGTAA	alt_4301_missing	4	8	12	3	14	6	12	10	6	3
TCCACGAGCGTCCTAA	alt_4301_missing	105	143	144	118	167	145	134	107	160	92
AACACCCGAGCATACG	alt_4301_missing	12	24	33	14	31	15	31	24	19	22
CCCCAGTATTGCAAGT	alt_4301_missing	81	86	114	83	114	72	86	82	100	76
CCGACTTGTCTGTACA	alt_4301_missing	37	32	42	45	35	26	42	25	57	37
GGTATTTTAGTCGTTG	alt_4301_missing	8	2	12	2	7	4	3	5	11	4
CGCTGATTAATGTTCT	alt_4301_missing	0	0	1	0	0	0	0	0	0	0
TCAGCATATGCGGGCT	alt_4301_missing	2	3	1	1	2	2	2	0	1	1
AGATAAATCTCCACTG	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
CGTTTTCCCCGATTAC	ref_3685_fdr	1	4	2	5	9	1	4	2	7	0
TGATGGGCGTTAATTG	ref_3685_fdr	33	30	16	25	27	23	33	14	18	17
TATTTCAAGAGTATAA	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
GTAACAGTAGCTCTCT	ref_3685_fdr	11	17	17	13	21	13	19	16	26	15
TACATTACTTGGGACC	ref_3685_fdr	54	66	58	52	61	49	69	31	58	37
AAACAGAAAATGCGCG	ref_3685_fdr	29	47	56	40	53	24	59	45	66	50
GGTCATTACGATTTCT	ref_3685_fdr	4	7	8	10	9	8	14	10	22	11
AGCGGGGCCCGGCAAG	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
TCGAACAATGTGTTCA	ref_3685_fdr	15	26	12	16	21	14	27	10	29	12
CTGTCTAGATTCGGGA	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
TACAGGCTTAATCTGC	ref_3685_fdr	18	16	12	21	31	24	21	11	38	10
ATGATGGCGTGTGTTT	ref_3685_fdr	38	65	36	33	69	42	63	29	83	31
TCTGAGCATCTCTAGA	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
GGTATTCCCTGCCAAC	ref_3685_fdr	39	37	32	37	45	30	48	24	56	27
ACCAATTTCTTGCTCC	ref_3685_fdr	0	0	1	0	1	0	0	0	0	0
TCAGGAAATTGGCCGC	ref_3685_fdr	53	60	71	58	70	45	72	45	83	39
CTTGTCTCCTCTTCGT	ref_3685_fdr	84	88	66	73	105	67	125	74	118	62
GGTCCCGTTGGCTCTT	ref_3685_fdr	8	16	13	9	14	13	20	6	16	6
CTTGTTGTCTTTTACA	ref_3685_fdr	9	29	19	15	27	27	29	24	35	21
GCAATAGTCCACCTAC	ref_3685_fdr	20	52	40	39	78	31	80	30	71	32
TGATTTTAACACAATA	ref_3685_fdr	43	71	63	50	66	43	91	45	86	40
TACACGCGGGCCACCC	ref_3685_fdr	1	3	1	3	2	1	7	3	2	1
AGTGAAGTTGCGTTCC	ref_3685_fdr	18	23	18	18	22	14	18	17	31	8
GAAGGCTTCCCTAATG	ref_3685_fdr	38	56	34	36	41	28	46	21	48	20
CAGTCTGTTGTATGGA	ref_3685_fdr	47	80	57	41	100	46	87	48	96	37
AAGGCTTTGAGTAACT	ref_3685_fdr	18	29	11	21	22	16	37	24	26	23
GGAGTACTCGGGTCCT	ref_3685_fdr	5	5	6	2	8	2	7	3	4	2
GAATCCTTTTGCCGGC	ref_3685_fdr	11	15	13	20	9	13	10	4	17	6
TTTCTAATGATATTCG	ref_3685_fdr	53	61	54	39	76	31	61	35	72	36
AGGGGCGGGAACTGTT	ref_3685_fdr	4	8	2	6	12	2	9	1	8	2
GTTTAACTTTAAAATT	ref_3685_fdr	26	27	27	34	41	18	33	16	48	23
GATCTCTTGCTGATGA	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
GCTCAGGCCGGTCTCT	ref_3685_fdr	36	39	41	36	51	33	38	28	50	25
CTTTAATGGAGCATAG	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
GAGCCCTGAGTACTAG	ref_3685_fdr	11	11	5	10	11	8	10	2	13	6
ATGCTGACGCACGCAT	ref_3685_fdr	10	18	23	5	11	12	13	15	16	5
GCGGGCATCCTTCTAG	ref_3685_fdr	14	25	24	13	27	16	14	14	24	9
TTCCTTCTGGAGGTAA	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCAATTTGGTCAC	ref_3685_fdr	4	7	2	5	1	7	4	1	5	6
CCGCTATCTTACCTGT	ref_3685_fdr	2	35	6	5	48	6	34	5	39	7
TTCGTACTTTGCCCTG	ref_3685_fdr	11	31	20	16	19	21	24	14	34	16
TGTCTCTTGTTATTAC	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
GGTCGATGTCACGGGA	ref_3685_fdr	0	4	10	2	1	2	2	1	9	2
TGGCTTTCGAGCTTTC	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
TTTCACCGTCTTCCCG	ref_3685_fdr	13	53	29	17	73	16	81	29	73	18
GTGTATTTTGCGCCCA	ref_3685_fdr	0	0	0	0	0	0	0	0	0	0
CGACGTCTCAGTAAAC	alt_2171_upstream	74	43	79	71	41	68	45	61	49	53
GCTATATCGCGTAGTC	alt_2171_upstream	58	20	64	59	26	47	15	68	20	48
TAGTTACATATCTCGC	alt_2171_upstream	88	25	62	79	32	87	36	80	31	76
GCCAGTCTGTAATTAA	alt_2171_upstream	6	5	14	7	8	6	8	12	4	2
TACATACTGCAGTAAT	alt_2171_upstream	0	0	0	0	0	0	0	0	0	0
AACCTTGGGCGGGAAG	alt_2171_upstream	568	199	730	583	199	583	199	463	195	476
GCCGAGACCACTTTGT	alt_2171_upstream	79	21	87	89	31	60	27	72	32	64
GGTCGCGTGGATGTAT	alt_2171_upstream	72	32	124	99	26	108	38	90	34	89
AGTGATAAAGACGACA	alt_2171_upstream	113	24	118	119	32	98	39	89	49	89
GCCCGTCTGAACCAGG	alt_2171_upstream	17	9	29	22	12	30	10	12	16	23
TGGGGGTTTCGAGCGC	alt_2171_upstream	45	8	47	60	5	44	16	34	18	35
CCGCTGAAAGGTAATC	alt_2171_upstream	0	0	0	0	0	0	0	0	0	0
CGCTAAATAGGGAAAA	alt_2171_upstream	0	0	0	0	0	0	0	0	0	0
TTATCAGCCGGATCAT	alt_2171_upstream	267	108	321	298	131	283	166	251	150	238
TCATAGGCTGTACTAA	alt_2171_upstream	306	91	363	335	99	278	97	268	101	272
GAGATTAGGGCCCTCT	alt_2171_upstream	294	100	384	295	88	339	140	284	131	295
TCTCGTCAGACATGGG	alt_2171_upstream	314	101	356	278	90	266	120	275	100	246
GTCGGCGGTCTACGCT	alt_2171_upstream	4	0	0	1	2	0	0	3	0	0
AAGCTTTGGCGGCTGG	alt_2171_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCTTTATACAACC	alt_2171_upstream	129	42	176	142	52	117	67	128	39	120
TGTTAGCGGGTCAGCA	alt_2171_upstream	97	31	125	101	27	85	28	74	24	86
TGGGTATCCAGGCATT	alt_2171_upstream	0	0	0	0	0	0	0	0	0	0
ATGCGCCTCGATATAT	alt_2171_upstream	98	21	108	114	31	83	29	85	33	100
CGAAGCGCCTAAGGTT	alt_2171_upstream	0	0	0	0	0	0	0	0	0	0
GGTTATGTTCGTTTGC	alt_2171_upstream	103	42	118	105	29	95	35	99	38	101
GTTACATTGCCCGCTA	alt_2171_upstream	4	0	6	7	3	8	5	6	1	6
CTGTACATCTTTTTGA	alt_2171_upstream	29	7	31	23	10	18	6	24	9	18
AATAATTAGGAGTTCA	alt_2171_upstream	308	76	355	277	75	268	103	267	89	232
CCTACAACTGTTACAT	alt_2171_upstream	47	42	59	58	39	28	50	31	43	46
AGTCCCCGATGGTATG	alt_2171_upstream	79	57	123	89	69	91	65	94	51	76
GCATTTTGTCTACTAA	alt_2171_upstream	116	50	128	108	35	110	45	119	46	109
TCATATTCGGGCGAAA	alt_2171_upstream	41	23	36	31	16	43	7	33	20	32
CATTCATCCATACGTC	alt_2171_upstream	0	0	0	0	0	0	0	0	0	0
TCGATGGAAAGCTTTA	alt_2171_upstream	236	63	221	200	54	169	58	127	63	153
ATGTTCGACTTATGCA	ref_3238_upstream	0	9	3	1	9	1	15	0	7	0
GTACGAAGGAAAACAG	ref_3238_upstream	13	11	18	10	8	8	11	8	10	4
TTGCGTGCCGCATGGC	ref_3238_upstream	44	35	59	38	40	49	55	39	53	43
CCAAACATATGTGCAG	ref_3238_upstream	21	40	31	25	38	21	37	24	37	26
CGCCCGCACGGACGAA	ref_3238_upstream	201	209	238	199	229	164	280	161	222	162
GCACAGTTGTTGCTCC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TTGTCTTTTACCCCCA	ref_3238_upstream	34	59	47	46	67	36	67	41	59	44
TACATGCCCGTAATTA	ref_3238_upstream	25	22	21	18	19	18	16	18	31	12
TATCCGCAAACCGCCC	ref_3238_upstream	6	5	5	3	8	3	9	2	8	3
CAAGATACCTCATGGC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TTCGTATCCGACGGAA	ref_3238_upstream	11	13	9	12	10	9	12	14	12	6
GTATCGCTATGTGTTG	ref_3238_upstream	5	8	3	6	6	0	3	5	6	4
TATCTCCATTATGCTC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
GCATCCTGTTAACCAA	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
AGGGACTCCGGAATGC	ref_3238_upstream	4	13	1	1	8	3	10	2	13	3
TTGGTACGGTAACGTT	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
ATTCGCCTAGAGGCAG	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
ACCCGTCGGTTCTTGG	ref_3238_upstream	10	22	15	9	30	8	28	7	23	15
CCGTCATTTTGAAGGG	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
CCTCGTTCGTTCCTGC	ref_3238_upstream	3	5	3	3	9	8	6	6	14	4
CGAAGTCTTTCACGGG	ref_3238_upstream	31	58	35	41	49	17	52	35	51	35
CTGGGTCCATCTATTT	ref_3238_upstream	16	36	12	11	32	25	31	20	31	22
ATCGAAAGTTACGTCC	ref_3238_upstream	52	46	49	48	50	42	66	25	61	38
TGATGACCATCAATAT	ref_3238_upstream	86	124	115	72	135	75	135	74	133	77
GCTTTTGTCAATCGTC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
GTAGCTTAAGTTGCGT	ref_3238_upstream	15	13	13	18	9	4	12	7	10	12
GTAATTTGCGTGCCAA	ref_3238_upstream	15	16	18	17	17	12	18	19	18	10
CGTTGCCAGATTACAC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
CGATATGGAACTCATA	ref_3238_upstream	7	9	12	10	12	8	16	6	14	6
CGGGGCAGTGACCCTT	ref_3238_upstream	13	7	8	7	7	5	13	5	8	3
AATCACAACCTACCCT	ref_3238_upstream	39	61	62	49	75	40	74	47	93	45
ATATTCCAATTTTCGT	ref_3238_upstream	11	15	14	6	16	8	12	9	15	5
ATTCAAGCACCGTCGC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TCCCTGATTCAGGAGG	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
GATCAAGTAATCCGTG	ref_3238_upstream	13	19	19	14	11	14	25	14	19	18
TGGTTGGCATAGGTGA	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
CATGTGAGCAAGACGC	ref_3238_upstream	6	7	8	4	9	3	5	4	7	8
AGCAATTCTTCTCGAC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
AACTTTTCTGCATGTT	ref_3238_upstream	0	0	0	1	2	2	1	0	4	1
CTCACTATGTCGCACC	ref_3238_upstream	2	7	7	3	5	5	6	4	4	1
TTGAAACTCTGGATGG	ref_3238_upstream	37	41	36	47	61	41	57	33	49	47
GTTTCTATGGCTTTGT	ref_3238_upstream	29	20	21	10	23	10	38	13	30	15
TAGTGACAGAGAACTT	ref_3238_upstream	30	58	44	23	51	24	61	23	70	40
ACTCTTCGGGAATTAC	ref_3238_upstream	15	18	11	10	16	4	11	9	17	8
ATCGATGTGATGTACA	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TTAGTTCATGGTGTAT	ref_3238_upstream	34	37	47	38	52	26	62	22	56	19
CAGCCGTAGAACATAT	ref_3238_upstream	1	0	0	0	2	1	0	0	0	0
CCAGGCGTTGTTTTAC	ref_3238_upstream	5	15	6	1	23	2	26	0	15	1
CGATCCCTTGTAATAT	ref_3238_upstream	42	64	80	43	44	41	51	36	57	36
TGCTGTGATTTCAGCT	ref_3238_upstream	18	18	18	8	14	11	17	7	17	6
CGTCTCGCAATATCGA	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
ACCAATTTAGTCTCAC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TTGCGTTGCATACAGA	ref_3238_upstream	12	14	16	5	13	14	17	13	14	12
AGAAAGCGTACCGGGT	ref_3238_upstream	63	97	94	76	104	64	79	57	97	79
CACTGTGCCTCTCGTT	ref_3238_upstream	17	32	10	14	15	10	31	16	28	12
AGATGCTATATCGCTG	ref_3238_upstream	4	6	11	7	9	8	12	4	7	5
TTGGCAAGGTTAACCC	ref_3238_upstream	15	17	18	14	23	13	30	20	22	11
TGATCGAACAAGTCAC	ref_3238_upstream	10	10	21	8	16	14	16	9	12	8
GCTTATCGGCCGTTGG	ref_3238_upstream	16	19	18	14	13	7	29	10	27	19
TTCCTGTTGCGATGAA	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
GCGTGTTCCCGTGTGT	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
GAGCGGTGCGGCCGTC	ref_3238_upstream	7	21	7	7	14	3	17	6	20	6
CTGGCGTCTTGTCTCT	ref_3238_upstream	20	22	25	23	24	8	27	18	28	13
TTATCCTCCACAAATC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TGTTAACACCCGATTC	ref_3238_upstream	18	22	27	11	14	21	25	22	24	14
AGTATATGGAGAAAGC	ref_3238_upstream	89	123	98	115	125	118	118	115	123	101
GAGGAATCCTCCCAAC	ref_3238_upstream	11	17	19	14	23	17	17	10	23	13
GCACTATTATATTTGA	ref_3238_upstream	5	3	3	1	2	3	4	2	3	4
CTTTCATCTGCACTTT	ref_3238_upstream	2	1	1	2	1	1	1	0	0	0
TCTTTATTGGCCCTCA	ref_3238_upstream	23	31	25	21	24	31	21	17	31	21
TGCGGATCTCTTTGAA	ref_3238_upstream	30	53	58	39	54	59	45	49	57	38
GGTCTTATAGGTCTGC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TATGAGCTCCACAACC	ref_3238_upstream	12	10	6	10	17	7	14	15	16	10
TGGATGTAATCTCTAT	ref_3238_upstream	25	40	21	34	26	35	41	20	29	27
GGGCCATTGAAAGATC	ref_3238_upstream	0	0	0	0	0	0	0	0	0	0
TACCTTCTTTCTTGAA	ref_3238_upstream	21	27	16	12	19	10	15	19	24	19
GCTTTGGTCTTAAGTT	alt_3829_RC	6	18	7	9	12	9	13	9	13	12
GCTTGTCAGCGTTGCC	alt_3829_RC	14	33	20	18	34	13	37	18	35	15
GTCTTCGACTAAGTGT	alt_3829_RC	66	95	73	62	105	58	120	64	140	63
TGAGCAAGTGCCGGCG	alt_3829_RC	18	38	29	16	28	12	38	22	40	27
CACGACTTTTGTGCCT	alt_3829_RC	56	101	76	53	99	52	127	67	119	69
CCGAAACGCCGCAGGA	alt_3829_RC	63	93	57	53	87	62	105	51	87	45
TTCCCTGATCTCGTGA	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
GGTGTCTAGTTATTGT	alt_3829_RC	6	10	10	8	7	8	12	7	8	2
ATCCTGCCACAAACAA	alt_3829_RC	4	11	4	4	6	11	2	0	7	7
TACACTCTCATGGGTG	alt_3829_RC	9	25	11	14	19	6	18	8	20	2
CTGCTACTCGTCCATT	alt_3829_RC	11	41	20	28	27	16	31	26	46	17
CTTTCAGTGGCTAGGA	alt_3829_RC	0	7	4	2	4	4	6	1	4	1
ATTCGGAATGCGTTTA	alt_3829_RC	2	4	9	8	6	3	16	1	13	6
ACTTTTTTATTCCTTC	alt_3829_RC	6	2	6	6	4	2	3	1	2	3
GCCTGTGATGTGTGGG	alt_3829_RC	19	16	15	13	21	21	15	11	31	14
CACGGATGTGATTACA	alt_3829_RC	63	122	68	52	143	60	124	67	120	59
CAGAGGTTAGTCGTGG	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
CCCGCGCACGCAATTC	alt_3829_RC	14	31	17	16	27	31	29	11	44	28
AGCGCCACAACATCTT	alt_3829_RC	115	141	145	109	166	102	164	115	157	121
CTGAAGGTTTGACTAC	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
ACCTGAACGCAGTATG	alt_3829_RC	5	8	6	7	11	5	17	3	8	3
TAATCCCGAAGATTGA	alt_3829_RC	49	64	60	52	68	37	77	46	67	37
GTACTCCGGTTGAGAG	alt_3829_RC	2	8	1	3	4	3	6	4	5	2
AGATTGTGGTCATATT	alt_3829_RC	44	70	45	37	59	48	71	40	92	41
TCTGAAAAGGGATGGG	alt_3829_RC	28	38	30	34	31	34	47	21	55	24
TTGTCTCCTGTAATTC	alt_3829_RC	24	21	23	8	33	17	37	16	28	13
TCGAAACATTTTAACC	alt_3829_RC	37	80	41	52	71	48	67	36	91	34
ACCTTATCACATCTAC	alt_3829_RC	84	160	117	84	162	97	152	72	173	91
TATTCATCGATCATTC	alt_3829_RC	24	47	38	34	49	23	29	20	49	30
TTTGGCTGCTCAACCC	alt_3829_RC	22	27	20	25	34	17	22	16	28	17
TGGTGAGCTAACTTGA	alt_3829_RC	20	37	26	33	42	17	34	17	46	21
GCACCAATGCATATTT	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
CTTCCCATACGTTTCT	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
AAGTATAAGATCGCTC	alt_3829_RC	14	27	21	8	29	18	26	13	36	15
CTATAGTGTGTAAATC	alt_3829_RC	22	37	36	15	40	16	50	12	46	11
TCACGTCTCGCTGACG	alt_3829_RC	13	22	12	20	17	18	19	13	16	3
ATACCGGAGAGTGTCT	alt_3829_RC	60	80	46	41	102	46	93	32	105	42
TTAACCAAGTACATGT	alt_3829_RC	37	39	33	31	48	29	54	28	59	20
CACTCAAGCCCCGCGT	alt_3829_RC	19	30	11	16	30	11	32	16	29	11
GTTTTAGGGTAACCGT	alt_3829_RC	83	107	84	87	112	55	118	66	110	59
TCGGATCGCACAAGAC	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
TTACTCCACGCACTGT	alt_3829_RC	49	45	23	41	52	38	69	34	49	42
TCATGACCGAACTAAC	alt_3829_RC	90	159	97	104	146	123	162	82	155	80
CGTGCCATGGTTCGAG	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
CAAGTGTTTTGTTTCG	alt_3829_RC	0	2	3	3	11	2	7	4	2	3
TGGATTAATTTCGCAC	alt_3829_RC	20	28	16	14	32	16	29	23	30	22
GGATTTGCTACCGATT	alt_3829_RC	8	19	17	7	11	15	19	8	24	8
AGCACCTTCGGGTACT	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
TGCCTTTCAGTTGTCG	alt_3829_RC	36	38	28	34	42	33	35	26	49	18
AGTTCGCTTGTCTGCC	alt_3829_RC	1	2	1	1	0	1	3	1	1	2
CCCTCTGCAGATGTTC	alt_3829_RC	1	9	1	4	4	0	6	1	2	3
ATGCAAGGATACGTCG	alt_3829_RC	14	18	19	20	36	24	35	26	42	13
CAATCTTAGTTTTTAC	alt_3829_RC	0	0	0	0	0	0	0	0	0	0
TCCATGGGCAGCGGCG	alt_3829_RC	2	3	1	2	2	3	1	3	3	4
GAGGGGCAGTACACCG	ref_5850_new	25	39	21	32	44	27	31	32	65	16
TACAAAATCAGGTCTT	ref_5850_new	3	2	18	8	11	4	6	3	8	3
GCTACTCAACAACGTA	ref_5850_new	10	22	7	11	13	8	14	7	17	6
TCTAGTCACACACAGG	ref_5850_new	21	57	30	33	53	18	59	24	49	22
TTATTGTTAATAATGT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
ACAATGGGCACCTCAT	ref_5850_new	4	6	7	7	8	7	4	9	9	7
TGTTCTCTCGCGCAAG	ref_5850_new	10	12	7	10	15	6	10	8	13	5
CCTGCTCTTCCATAAC	ref_5850_new	10	22	18	12	20	14	20	6	31	11
GTACTGGATAGTGTTA	ref_5850_new	3	11	8	10	12	6	7	6	13	2
GGATAGCGTAATTTGT	ref_5850_new	29	53	41	35	63	31	67	30	47	22
TTAAGCTCTGGTGACT	ref_5850_new	3	7	7	3	7	2	11	5	7	3
GAAATCTGCTCGGTGA	ref_5850_new	25	44	33	25	42	26	45	31	59	30
ATGAATTGGGATTGGC	ref_5850_new	1	1	1	0	4	2	1	0	3	0
ATACCCGAATTGTTTG	ref_5850_new	0	0	0	0	0	0	0	0	0	0
CCGGTTATGTCGCTTT	ref_5850_new	40	42	39	32	53	34	51	39	53	31
TATAATGCGTAGTCCC	ref_5850_new	41	78	47	27	74	34	71	34	55	41
CTCAACGCTAAAGCAT	ref_5850_new	62	62	77	57	47	49	55	44	56	54
GCCGGATAACGCAGCC	ref_5850_new	18	23	13	6	23	14	29	3	38	13
TCTTGGAGCAAACGCT	ref_5850_new	22	46	27	28	46	26	59	24	41	14
CTACATAAGGATATCT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
TTCGTTCACCAACTGC	ref_5850_new	5	18	14	11	15	6	15	12	18	17
CTGTTAATCCGCTTTT	ref_5850_new	0	0	1	0	0	0	0	0	0	0
CGACTGCGGAGATGTA	ref_5850_new	16	19	22	7	20	27	23	16	32	10
TTTCGATTTAGCGGTA	ref_5850_new	17	12	6	12	11	7	19	8	16	6
AATCATTCGGATAGAT	ref_5850_new	35	47	30	24	72	38	53	19	44	28
TGGTCCAGCAATGTAT	ref_5850_new	70	173	97	71	173	69	165	71	158	55
CCTCATATTATGTAAG	ref_5850_new	15	58	27	26	76	25	73	38	49	24
ACTAGAGCCTGTAGCT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
ACCCTGCGCGTGAGGT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
TGAGCATGCGCATCTT	ref_5850_new	3	16	9	5	6	6	9	1	15	12
CGTACCTCTAGTAGGC	ref_5850_new	25	56	24	22	40	22	61	11	50	31
GACGACCTTTACGCGG	ref_5850_new	0	0	0	0	0	0	0	0	0	0
AATACCGCTCGATACC	ref_5850_new	37	74	51	25	61	42	82	38	77	33
TAGACCTTCCCGTTGC	ref_5850_new	92	180	111	81	173	88	187	81	151	82
CGTGAGACTGACTCTC	ref_5850_new	9	31	29	12	32	19	31	11	43	18
TTTGATGCTGACTTCT	ref_5850_new	103	198	113	101	162	101	149	99	146	86
GACACGGTTGTGTTTT	ref_5850_new	18	21	18	13	26	15	26	15	36	10
GGGTCCTTCCTGTATT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
CAAGTTCTGATGTCTG	ref_5850_new	7	48	12	17	46	17	41	12	58	10
TGTTAATCTTATCCGG	ref_5850_new	55	65	58	50	88	63	89	53	118	42
CTCGAGGGTAACATCT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
GCTGAGATACACTTCC	ref_5850_new	25	46	27	33	49	18	48	12	59	22
GGACGCCTGGCCCCTC	ref_5850_new	12	35	16	14	45	27	35	14	50	14
TTTAAAGCCTGTTCTT	ref_5850_new	26	38	17	11	33	25	45	17	45	16
GTAACGTGGGCCATAA	ref_5850_new	3	7	2	4	11	7	12	8	7	2
TATCTGCTCTGTTTAT	ref_5850_new	68	114	81	66	139	61	123	63	141	58
CGCTGTCGTAAAAGAA	ref_5850_new	28	53	39	46	69	32	47	25	61	25
AGGGGTTAAACACTTC	ref_5850_new	0	2	1	2	0	0	2	0	5	0
GAGAGCATTTGATCCC	ref_5850_new	55	83	68	53	74	48	82	41	109	38
AGCTTCCCGTCCGCAG	ref_5850_new	7	10	9	7	17	5	12	8	6	7
ATTAGATGGGAATTGT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
GTCCCGGGACGGATGT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
GCTGTTCTTGTTGGTT	ref_5850_new	29	57	41	28	59	44	65	25	61	33
ATCCGCATAATAATGG	ref_5850_new	5	10	9	8	9	6	9	5	11	7
ATCGCTATGCGCTTGA	ref_5850_new	31	59	36	37	42	15	64	28	56	27
TATCGAGTGGATCGTC	ref_5850_new	29	6	31	28	11	27	3	26	6	18
ATAATACACTTGTGGT	ref_5850_new	34	51	48	39	71	29	63	29	66	33
GTCTACGTGTCCTCTT	ref_5850_new	15	15	8	6	14	10	23	15	20	12
ACATTATTCCGTATCG	ref_5850_new	0	0	0	0	0	0	0	0	0	0
ATAATTCGATATTTCG	ref_5850_new	59	110	68	46	108	55	91	43	97	59
AAGTCCGCGCCAGTTA	ref_5850_new	13	34	27	20	47	28	54	26	41	15
ATCGTTCTCATAACAA	ref_5850_new	4	6	3	2	13	2	6	7	14	4
GGCTATAACCCATCTG	ref_5850_new	7	10	16	4	19	8	18	12	16	10
ATTAGACTTCTTCCCT	ref_5850_new	19	21	10	10	23	16	26	14	23	15
TGGCAAGGAGTTGTGT	ref_5850_new	18	37	24	12	40	14	35	16	39	12
CCTAGTTTGATTAATC	ref_5850_new	19	21	9	8	22	5	25	13	26	6
TGATGTATAATCATGA	ref_5850_new	32	50	29	24	51	43	43	30	54	23
CTGCCGATCTCAACGA	ref_5850_new	0	0	0	0	0	0	0	0	0	0
CGCTATTGGGTCTGTC	ref_5850_new	18	26	15	11	31	15	34	20	40	22
GGTGAAAGGGTTGCAA	ref_5850_new	0	0	0	0	0	0	0	0	0	0
GCTTTTCACACATTGC	ref_5850_new	44	80	43	36	69	51	77	36	57	30
TTCACTCATTAAGGTC	ref_5850_new	0	2	1	2	4	0	1	3	8	3
CGTCGTACGAGTTGTA	ref_5850_new	0	0	0	0	0	0	0	0	0	0
AGTTCGTGGCTTTCCG	ref_5850_new	11	21	16	12	17	10	20	3	28	14
AAGTAGGGATCTTATA	ref_5850_new	8	11	8	9	7	2	7	3	10	6
CTTATGGCACCAGGGG	ref_5850_new	16	21	15	16	25	11	26	12	16	10
TCATTCACAGAGTCTC	ref_5850_new	6	10	11	1	12	3	4	5	9	5
TTTTCACCCACCTGGA	ref_5850_new	11	23	6	10	32	4	27	9	31	10
GGAGGATGTGGTATCC	ref_5850_new	0	0	0	0	0	0	0	0	0	0
ACGATGACCTCTTATC	ref_5850_new	0	0	0	0	0	0	0	0	0	0
ATCGGTGCACACTGTT	ref_5850_new	0	0	0	0	0	0	0	0	0	0
TTTCTTGTGAAGATGC	ref_5850_new	8	8	11	8	7	6	20	5	15	3
GGTATTCGGGGTTGTT	ref_5850_new	14	29	14	15	30	15	29	8	27	16
TCCCTCTCGCCAGTGC	ref_5850_new	2	0	2	3	2	5	2	0	1	4
ACGCTTGCCAATTTAT	ref_5850_new	38	86	47	48	104	40	104	41	104	39
ACCGTCTCATGGGCTG	ref_5850_new	0	0	0	0	0	0	0	0	0	0
TCGCCTCTGCGGCTGA	ref_5850_new	5	16	10	9	19	10	21	12	18	10
ATGAATTGTGTGTCGC	ref_5850_new	2	10	5	2	4	4	10	2	10	6
CTTTTTAAGCGAATAC	ref_5850_new	0	0	0	0	0	0	0	0	0	0
TCTTCGGAAAACACAA	ref_5850_new	59	82	77	56	82	62	78	54	93	50
TCACAAACATTGTCCG	ref_5850_new	0	0	0	0	0	0	0	0	0	0
ATCAGGGCAGTACGGC	ref_4236_missing	0	0	0	0	0	0	0	0	0	0
GATTCTAGGTGTACAA	ref_4236_missing	0	0	0	0	0	0	0	0	0	0
CACTGGCTGCAATGGT	ref_4236_missing	0	0	0	0	0	0	0	0	0	0
ATCATTTCTGGCGGTG	ref_4236_missing	0	0	0	0	0	0	0	0	0	0
TAGACCTTGATTTTTA	ref_4236_missing	3	6	6	2	6	3	3	4	10	4
TCTTACGGCTGGCGTC	ref_4236_missing	15	21	27	23	20	14	14	8	17	15
CTAATTGTTTAAGCCA	ref_4236_missing	28	39	36	20	40	28	25	19	31	13
CATGCCGTCATGGACG	ref_4236_missing	0	0	0	0	0	0	0	0	0	0
GTCTCACCTTCCCTAC	ref_5742_new	0	0	0	0	0	0	0	0	0	0
GTACCTTGGACACTGT	ref_5742_new	39	35	51	44	27	29	37	25	37	17
TATAGGTGTTGTTCTA	ref_5742_new	0	0	0	0	0	0	0	0	0	0
CGATGACCAGTACATT	ref_5742_new	20	29	23	22	32	31	25	22	28	19
TCCATTGAAACTCTGA	ref_5742_new	87	61	88	99	60	84	73	55	67	65
TACTCCGTGAGGAAGT	ref_5742_new	88	74	101	91	78	99	87	69	110	87
CTTGTTGATATATTCC	ref_5742_new	144	110	229	192	132	154	135	163	128	137
AGGCCCCTTCGTCACA	ref_5742_new	128	90	178	148	101	123	81	139	101	113
TTAATCATTGTTTCAT	ref_5742_new	156	100	177	148	107	132	82	149	102	161
AGGTTTGTATACTCTG	ref_5742_new	10	16	12	19	9	11	12	11	14	10
CTGTACCTAAGCTAGT	ref_5742_new	0	0	0	0	0	0	0	0	0	0
AAGACTTGGCTGTATA	ref_5742_new	8	3	19	7	9	13	4	7	12	11
GTCCTCTCGTAGGTTT	ref_5742_new	0	0	0	0	0	0	0	0	0	0
ATACATTGAAAATCTC	ref_5742_new	0	0	0	0	0	0	0	0	0	0
TCTGGTAGTACTATCG	ref_5742_new	48	27	48	27	41	42	40	44	38	42
AGACTATGTGGCAACT	ref_5742_new	54	41	41	49	46	43	51	34	60	56
CGCGATCGTGAATGTT	ref_5742_new	4	4	7	13	3	12	5	13	8	7
TTCTGCGATTAGGGTA	ref_5742_new	0	0	0	0	0	0	0	0	0	0
GGTGCGCCCAATGTAT	ref_5742_new	0	0	0	0	0	0	0	0	0	0
CCTACCATGCCGTTAT	ref_5742_new	15	11	26	21	14	17	18	10	23	18
CAGCTTTACGTTTTGC	ref_5742_new	21	58	16	28	70	26	86	27	88	17
CAAATGGGTCATTTAG	ref_5742_new	18	18	30	24	19	27	17	30	20	38
GTCAGGATCTGTATAG	ref_5742_new	0	0	0	0	0	0	0	0	0	0
TCGACACTCGGGTTTG	ref_5742_new	62	53	67	41	43	37	40	49	42	46
GCGCCCAGTTTGTCCC	ref_5742_new	107	101	118	116	70	114	57	104	74	101
GGTGCGTTCCCTCGAC	ref_5742_new	192	192	238	235	159	195	181	191	179	167
TAAGAACATATGGTGG	ref_5742_new	14	24	20	23	12	23	19	17	23	16
TCCTTCTCTTGCAACG	alt_5768_new	36	42	36	25	44	31	52	48	38	29
AGTTACTTGGAATCAT	alt_5768_new	24	31	26	34	26	21	41	26	42	22
ATCGCGTCAACCCTAT	alt_5768_new	76	90	101	80	96	65	90	70	79	63
TAAACATTATGTCTGT	alt_5768_new	18	22	21	23	25	15	21	17	13	12
GCGTCCTCTTAATGCA	alt_5768_new	0	0	0	0	0	0	0	0	0	0
CGAAGATGCTGCAGTC	alt_5768_new	0	0	0	0	0	0	0	0	0	0
GGTACCTCAAAAGCGC	alt_5768_new	0	0	0	0	0	0	0	0	0	0
GTCGCTACATCGTATA	alt_5768_new	15	23	24	21	26	19	32	26	27	13
CACTAAACGACCCGGT	alt_5768_new	0	0	0	0	0	0	0	0	0	0
CCCGTACATGCCGTAC	alt_5768_new	0	0	0	0	0	0	0	0	0	0
TACACCGCACTACGAG	alt_5768_new	0	0	0	0	0	0	0	0	0	0
TAAATATGTATTGAAG	alt_5768_new	80	78	69	59	82	49	70	94	71	65
TCCTAGAGGTACAAAT	alt_5768_new	100	119	107	73	147	102	133	93	156	87
CAAGTTAAACATAGAA	alt_5768_new	35	26	35	30	36	38	20	21	37	27
ATTCCGATCTATCCAT	alt_5768_new	8	16	13	15	10	7	16	5	5	7
GTGTAGAGAGTTCGTC	alt_5768_new	31	54	55	38	39	36	45	44	54	37
GTGCATAGATCAGAAT	alt_5768_new	17	23	30	22	34	36	45	15	32	29
GGTGTGTACGAGCTCT	alt_5768_new	69	66	82	51	70	72	58	55	69	59
TACTTACTTAATCTTC	alt_5768_new	3	10	8	8	17	8	4	4	7	3
TCTGATCCTGCTTAGA	alt_5768_new	14	24	32	23	28	14	37	22	28	16
CCTGGATCGATTTGGC	alt_5768_new	10	21	17	15	22	14	34	7	22	12
AAACTGTTCCCACACC	alt_5768_new	53	55	59	63	61	51	46	68	67	60
CTGCACATTCTTTCGG	alt_5768_new	37	50	45	39	56	46	47	57	62	39
ATAGTAGCTAGGGAGG	alt_5768_new	13	18	15	5	28	12	12	17	22	13
CTGCAGGTATGATTTC	alt_5768_new	158	148	165	155	139	143	128	133	142	143
GCGGGAACATCGGTCC	alt_5768_new	84	84	83	73	71	76	73	65	88	62
CCTGTTTGGCCATGAA	alt_5768_new	26	62	38	48	54	29	42	26	53	34
TTACGTCTGTGTCATA	alt_5768_new	52	49	47	28	44	31	42	31	45	37
CTATGATATTGGTGGT	alt_5768_new	23	31	35	26	37	20	38	32	32	17
TACCAGATCTAGATCG	alt_5768_new	57	69	73	64	77	51	74	68	73	63
AAATGGTCGACAGATC	alt_5768_new	42	70	64	51	48	47	50	39	44	41
ACCCTCGGGTCACGAG	alt_5768_new	14	17	7	9	17	11	12	12	10	10
CCCGTTATTGTCTGAC	alt_5768_new	29	38	37	30	31	22	26	20	22	19
CGAGTCACTTACCCCC	alt_5768_new	0	0	0	0	0	0	0	0	0	0
GAGATCTAGTCTGCTC	alt_5768_new	50	68	67	62	72	62	91	65	74	46
TTTGCGCTGAATAATT	alt_5768_new	12	24	12	20	10	13	10	4	26	16
GCCTTTAGGGGCGTGT	alt_5768_new	45	67	55	46	63	40	70	43	64	27
ATCATATTCCGTTGGA	alt_5768_new	63	58	74	63	82	59	67	56	64	51
GCGGGAACATAGGTCC	alt_5768_new	0	0	0	0	1	0	0	0	0	0
TTCCCGGCAGGTAAAG	alt_5768_new	58	57	59	58	45	40	62	73	61	50
CCATAAAGCAATAGAT	alt_5768_new	80	75	112	74	82	81	90	68	102	80
ATTCTCAGACGGACCC	alt_5768_new	8	8	3	13	12	8	6	8	9	9
GCCCGCCCTTGAACAG	ref_1284_reverse	7	10	9	11	9	7	6	12	6	11
GAAACCACAGTTTCGC	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
AAGACCTTTCCGGAGG	ref_1284_reverse	30	54	38	40	44	39	53	44	44	36
TCATTCTCATTGCACC	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
AATCGCGCATGCAAAT	ref_1284_reverse	49	31	46	35	42	37	36	27	38	34
TTAAGGAAAGATACTG	ref_1284_reverse	30	45	43	40	46	56	53	36	39	43
TATATTCTGGTTACGT	ref_1284_reverse	2	10	2	6	3	1	4	3	2	5
CAAGTTGTTCGCATTG	ref_1284_reverse	16	30	16	8	30	18	20	27	36	19
GTCATGCTATCGTGCA	ref_1284_reverse	29	26	32	22	36	26	43	17	40	25
GAGTACAGTCCATGCA	ref_1284_reverse	39	33	41	26	39	34	41	41	46	30
TTTCGTCGGCTACATC	ref_1284_reverse	28	49	28	41	30	27	46	29	37	13
CATCCGTTCTCACACA	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
ATGTGCCGAGGTTCAT	ref_1284_reverse	5	13	13	3	2	6	6	8	14	6
TTTTCTGGTTCTTGGC	ref_1284_reverse	33	31	32	34	33	28	38	33	46	25
CGGCTGTCTAAAATAC	ref_1284_reverse	23	25	28	26	37	22	46	27	38	21
AATGAACTTCCGACTG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
TACTCGGTACTTGATA	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GGTTTTTTCGTCTAGA	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
TGGAGCATCCACGCCT	ref_1284_reverse	17	22	23	14	19	20	12	18	18	22
GTTGAGCGCGATTCAT	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTTCTTTGAGCTATGG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTTTGGGTAGCGCCAG	ref_1284_reverse	4	8	2	13	5	9	12	11	7	9
GACCTAAGGCAATTGG	ref_1284_reverse	13	21	21	11	10	12	17	9	10	12
GCTTTCTATTTTTCAG	ref_1284_reverse	71	71	83	63	77	49	66	63	67	70
GCCAGCGGCAAGTTCT	ref_1284_reverse	18	8	19	8	23	10	15	7	9	4
CAATTGGGGTTGCGGC	ref_1284_reverse	9	10	11	14	7	19	14	7	7	15
ACCTTGTTTATATAGG	ref_1284_reverse	1	6	6	2	5	2	9	6	2	1
TGACTATGTCTACAAC	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
CGCATTGTTGAGTTTC	ref_1284_reverse	46	65	49	54	53	42	70	49	63	34
AAATTGTCCGCCTGTA	ref_1284_reverse	38	33	52	32	34	39	41	33	59	41
CTACGTGCGGTTCATC	ref_1284_reverse	66	69	80	74	87	61	105	62	86	62
GGAACCTTTTTGCTTT	ref_1284_reverse	0	0	2	1	0	0	1	2	0	1
TTGGGCCCCTGTCGAT	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
AAAGTGTGGGGCTTTT	ref_1284_reverse	13	31	27	21	29	25	24	24	21	27
GCTCACTTTAAACTGC	ref_1284_reverse	4	6	4	5	2	6	4	1	6	4
TATACCGGCCTCATTT	ref_1284_reverse	10	26	21	19	23	12	27	23	33	21
TGGGGGTGGGTATGAT	ref_1284_reverse	14	10	17	8	12	12	10	12	14	15
TAACGGGACATGAATA	ref_1284_reverse	37	35	45	24	32	34	23	29	44	32
TGACATTTCTCAGGAG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
TGTCAATGGGAAAGTC	ref_1284_reverse	65	73	77	53	69	64	76	51	61	53
TTACTTAGTGAGTATC	ref_1284_reverse	42	62	59	50	46	45	86	36	88	44
AGGTCTAGTAACGTCG	ref_1284_reverse	20	33	19	25	27	16	30	14	14	8
GTTTTATATGCGGACA	ref_1284_reverse	13	25	17	17	22	17	21	20	28	15
CACTACCGGTGGGACC	ref_1284_reverse	13	16	12	11	10	9	16	13	20	8
TTTAGTCTATCCCCTG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
ATGGGTCTCTCTTCAC	ref_1284_reverse	21	26	32	20	24	28	18	27	23	19
GCTTTACCTATTAAGG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
AGCGACCACATCTATA	ref_1284_reverse	16	14	15	13	10	16	20	8	10	18
CGACATTATAGTGTTG	ref_1284_reverse	86	105	104	72	103	88	117	73	99	81
CCGCCTCTTCTATTAG	ref_1284_reverse	6	6	5	10	11	2	8	2	4	2
CTTTGTGTCCTTTTTA	ref_1284_reverse	15	15	23	19	22	13	17	9	21	16
TAAATGCTGGCCGTAA	ref_1284_reverse	26	25	30	34	37	24	37	25	31	27
GACTATAGTGAGCCTG	ref_1284_reverse	94	99	74	97	79	65	124	82	75	72
GGATCCGGAAGGCCCC	ref_1284_reverse	27	31	24	30	44	21	33	27	19	18
TCATGAAGTCTATAGC	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTTTATCGCGGCCATG	ref_1284_reverse	48	51	40	46	42	62	43	55	57	41
GCTCTTTAATGACGCG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTTATCGCGTACTATC	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCGTTCCCCGGCG	ref_1284_reverse	27	40	14	26	30	12	36	20	40	23
CCACAAGGACGGCTAT	ref_1284_reverse	39	31	29	28	30	24	33	39	54	26
GAGGTCTATCCTTTAT	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
ATTAATTTACATATCT	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
CTGCCTAAGGCCCGTG	ref_1284_reverse	52	80	57	52	64	60	53	64	66	62
CCTTTCTCACCATTTG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
TAAAGGTTTCCTCATG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
AGGCTTATTATCTTAT	ref_1284_reverse	173	213	182	173	185	183	200	137	197	121
TTCCCCCTTATATTTG	ref_1284_reverse	9	25	6	16	18	8	20	17	12	19
CACCATACCCGTCGTA	ref_1284_reverse	15	44	22	11	44	20	49	23	29	19
CGCCCCGTTCCTCTAA	ref_1284_reverse	10	8	9	9	12	8	15	13	12	6
GCGGGCAAAGGTCTCT	ref_1284_reverse	9	5	4	9	3	6	9	6	6	8
GAATCCTAGGCGATCT	ref_1284_reverse	36	37	40	25	40	26	31	40	37	27
TGGTGATGGTTTCATT	ref_1284_reverse	54	44	67	51	38	43	37	41	41	42
CATCAGGCTGCCGCCT	ref_1284_reverse	442	46	595	495	31	454	47	388	51	375
TGCTGACTGTATGGTT	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTGACCACGCGATTTG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
CGTAAGATCGATTCAC	ref_1284_reverse	29	37	45	33	47	32	46	23	53	33
GGAAAGGTTATATCAG	ref_1284_reverse	24	19	29	29	34	30	29	30	24	27
AAGCATTGATAAACCG	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GTACGATACACCTTGA	ref_1284_reverse	171	155	170	188	178	142	190	130	194	154
CTGTGGGGATGCTAGT	ref_1284_reverse	0	0	0	0	0	0	0	0	0	0
GCGGTTATGCGGTGCC	alt_959_RC	20	18	12	26	10	17	16	14	17	19
CGGGCAAACAACTGCA	alt_959_RC	37	12	33	29	12	22	19	21	8	32
CTACCTTGTGGTCGCC	alt_959_RC	19	25	28	18	18	15	28	16	26	21
GTTAACTGCATCGTAC	alt_959_RC	0	0	0	0	0	0	0	0	0	0
CGCTCGCCTTCACCAC	alt_959_RC	31	24	32	24	17	13	20	26	22	22
TCCTTACACGTTTTAT	alt_959_RC	64	51	69	46	26	56	41	58	37	49
CCGAAGCCAAACGACA	alt_959_RC	0	0	0	0	0	0	0	0	0	0
ACCTGACATGGGATAT	alt_959_RC	64	27	81	76	32	51	40	60	28	54
GTCAACAGACTTGTCT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
AGTCTTATTTTACCAT	alt_959_RC	23	6	27	24	3	18	4	16	7	19
ATTACAATGCGCGGGC	alt_959_RC	126	50	133	168	53	127	58	142	53	107
CTGAGGCAACCTATGC	alt_959_RC	36	24	52	43	26	42	18	28	17	24
GATTATTCGCGTTGTT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
AATCAAGGGTGTCTCC	alt_959_RC	7	4	5	11	6	6	3	9	5	13
GCCAAGGGGAGCAAAT	alt_959_RC	25	11	37	45	20	19	18	27	11	32
TTGACTTGGGACAGGG	alt_959_RC	33	10	38	43	14	32	19	30	22	26
CGCTATACTTTTGTCA	alt_959_RC	58	27	59	78	12	50	24	53	39	50
CATTTACAACACGATG	alt_959_RC	0	0	1	0	0	0	0	0	0	0
CCGTCTTACAATTATC	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TTACTAATCGTGAATT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TCCACATGTGCAAATT	alt_959_RC	50	33	51	49	31	59	40	63	44	51
GTGTTCTTATTTCCGC	alt_959_RC	47	18	65	45	19	47	26	34	25	54
CGAACATCCTTATGTG	alt_959_RC	38	17	36	39	16	34	15	34	12	23
CTTTGTCGGCATTCTA	alt_959_RC	30	15	37	40	13	29	15	17	13	17
GTAATGTGGGACACAC	alt_959_RC	34	14	30	35	11	23	19	24	20	25
GAAGTACGTCTTGCGG	alt_959_RC	41	25	41	49	11	36	20	43	17	37
CAACCCGGCGGCTTTT	alt_959_RC	12	1	18	13	2	11	5	9	5	9
GCTGAAGTCTTGAGAA	alt_959_RC	0	0	0	0	0	0	0	0	0	0
ACGTGTGGAGGAACTG	alt_959_RC	49	23	52	49	18	41	23	30	20	38
GGACAGGAGGAATATT	alt_959_RC	37	12	39	32	8	29	16	28	20	25
TGCCTCCACTTTTTCA	alt_959_RC	63	26	68	52	21	50	13	45	24	63
ATCTTAACGAGTCAAG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TTTCCCTTCCGGTAAG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
ACCGGTTGTTATATTC	alt_959_RC	48	61	71	58	67	42	59	47	53	40
TTGCGAGCCGGCACTT	alt_959_RC	27	17	40	28	23	39	30	48	27	34
CCGCCTCACCCGGGAT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
ACCGATTGTCCCGTTG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
CGACCGGGTTTGACCG	alt_959_RC	29	15	43	30	17	32	13	32	20	28
TCGGTCAGCTAAGCGG	alt_959_RC	29	10	29	16	20	25	17	17	12	18
AATTGTGTGTGATACT	alt_959_RC	240	75	286	268	77	172	98	189	75	166
AAATGCCACTTTGTCC	alt_959_RC	229	84	253	204	111	172	90	182	116	142
GCATCTGTATCGGGTG	alt_959_RC	115	41	141	156	53	124	78	114	70	99
CAAGCCATTCTCTCTT	alt_959_RC	29	16	34	36	17	30	15	23	12	20
TCGGCAAACGTCGCGT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TTGAACGCTCATTGAG	alt_959_RC	15	9	18	11	3	5	3	16	4	15
TGATTCATTTAATTTG	alt_959_RC	10	4	11	11	5	16	2	7	0	7
TCTCCAATCCGTGGGC	alt_959_RC	46	29	51	40	29	32	35	54	32	31
CGGTTATACAGTCCCT	alt_959_RC	4	2	2	4	2	3	2	3	0	6
ATATGCAATGCATCTC	alt_959_RC	0	0	0	0	0	0	0	0	0	0
AAACTTGGCTTACCGC	alt_959_RC	79	56	96	114	43	82	61	74	46	79
AACTTTTATGCACAGC	alt_959_RC	25	22	39	30	14	38	8	34	13	21
ATTCGTCCAAAAGTCT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TCCCTGTTGCCAACGT	alt_959_RC	6	7	11	7	10	10	7	4	12	5
TTGCCAGACATTGCAC	alt_959_RC	53	14	111	58	20	63	44	53	38	39
ACAAGGCTCACAGGAA	alt_959_RC	0	0	0	0	0	0	0	0	0	0
ATGCCACTACCCCGTC	alt_959_RC	28	18	21	24	18	16	24	12	35	20
TATTTTCCACACCTGT	alt_959_RC	64	33	93	103	30	91	40	78	29	83
CTTAACACGTCATCCT	alt_959_RC	108	30	112	114	38	95	44	108	50	90
TACTCCCATAGGGTCG	alt_959_RC	34	17	40	38	10	26	9	18	16	21
ATCTGGGTTGTACGCT	alt_959_RC	66	35	124	102	41	73	35	67	44	56
GTACCGATTTGGGCCT	alt_959_RC	143	57	157	164	60	126	76	131	79	92
TTCACTTTGTAATCTT	alt_959_RC	3	1	7	3	3	1	4	4	4	5
ACTCCAGCGCGATTAC	alt_959_RC	59	20	65	46	33	50	23	59	14	48
ACGAGAGAGCTTATTG	alt_959_RC	28	5	31	41	9	26	16	23	13	24
ACTGAACCTCAAGAGT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
AATTCTAGACGTGTGT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
GTTGCCGGATATGTCG	alt_959_RC	26	18	34	32	10	31	13	30	9	20
TTACAGACTTGATAAC	alt_959_RC	37	11	56	39	11	24	18	42	22	39
AATGATCCTTGATTAC	alt_959_RC	0	0	0	0	0	0	0	0	0	0
ACTCTATTGGGTATTA	alt_959_RC	42	21	47	58	10	43	24	44	15	49
CGCGTTGTGATCGGGA	alt_959_RC	16	12	23	20	6	21	8	26	9	20
TCGTCCCGTTTTCCTG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
CATTGCCGTTGGGGAC	alt_959_RC	15	4	25	16	9	17	7	10	10	12
GCGAGCCCGTGGCGCA	alt_959_RC	10	8	20	23	6	21	8	18	12	20
GACGCTTTTCGCATGC	alt_959_RC	0	0	0	0	0	0	0	0	0	0
GCATGTGTTTTGTATC	alt_959_RC	70	49	75	52	42	56	43	71	24	63
ACAGCTATCACTTTGG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
AAATACTTGTGTGTGG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
GGCCTACGTACTAAGA	alt_959_RC	245	113	317	284	142	234	146	248	130	212
TTGCGCCCCGTGGCCT	alt_959_RC	67	25	71	59	24	52	18	59	27	60
TTTTATAGCATTTGTC	alt_959_RC	0	0	0	0	0	0	0	0	0	0
GTATCTCCCTTCTATG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
GCATTATTAAAACAAA	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TCTTATTCGCATCGCT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
CTGTTAATCCTCGTAT	alt_959_RC	73	36	125	101	47	111	43	94	50	73
TGATCTGACCAGTGTC	alt_959_RC	146	58	122	145	73	127	77	139	67	121
CTTATCATTGCCTTTT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TAGCCTTGCAACCGCT	alt_959_RC	46	33	74	51	19	59	28	45	19	42
TCCCGCCTTTATCTGG	alt_959_RC	0	0	0	0	0	0	0	0	0	0
GTCCATTATTGGCAGT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
CAGTTATAGCACAGGA	alt_959_RC	166	105	218	196	77	161	83	189	82	152
TTGGCGTTGGGCCAGG	alt_959_RC	116	58	124	120	55	113	55	99	54	102
GTAGACGTTTCCTGTA	alt_959_RC	16	10	25	24	7	14	5	20	9	9
GAATGTTCCTGCGGGA	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TGTATGCCATTTTGCG	alt_959_RC	25	11	43	25	18	28	10	29	16	17
TTATTTCTGTAAGTAC	alt_959_RC	55	31	89	67	31	82	46	80	22	58
GAGTGATGACAGAGCC	alt_959_RC	0	0	0	0	0	0	0	0	0	0
GAGTATCTCTGGGAGC	alt_959_RC	44	13	48	36	20	43	15	45	16	31
TCTGACACGCGGATGA	alt_959_RC	7	3	6	8	4	7	6	6	5	6
CGGGACCCAACATTGG	alt_959_RC	20	2	32	28	8	18	9	20	11	14
ACTGTTCTTGTAAATT	alt_959_RC	12	6	18	8	13	12	9	14	9	7
ACTGCGATACGCAAGT	alt_959_RC	20	6	25	19	16	20	8	27	8	29
TTGAACTGGCAATTTT	alt_959_RC	0	0	0	0	0	0	0	0	0	0
ACTGTTCTGTTAACCA	alt_959_RC	0	0	0	0	0	0	0	0	0	0
TCAGTTCCGAAATAGT	alt_959_RC	93	66	118	108	58	117	55	124	63	93
CCGTTGTCCGGCCATG	ref_4519_missing	0	0	0	0	0	0	0	0	0	0
TTGCCTCAACTTTACA	ref_4519_missing	7	15	17	10	22	8	13	9	13	2
CTTATATGTCTAGACT	ref_4519_missing	0	0	0	0	0	0	0	0	0	0
GGTTAGTTTGCCCTCG	ref_4519_missing	23	44	36	30	37	31	45	26	31	27
ATAGTTTTATCGCTGA	ref_4519_missing	7	8	18	13	20	8	10	8	18	8
TAGTTATCCCGCATCA	ref_4519_missing	0	0	0	0	0	0	0	0	0	0
GATTTACATGTGTGCT	ref_4519_missing	1	10	3	2	12	10	10	4	10	8
GGCTCCTTCCACTCAG	ref_4519_missing	163	162	184	130	175	117	193	145	190	125
CAGCGTATGCGCGAAT	ref_4519_missing	6	1	4	1	5	2	5	4	4	6
TGGTTGCGCCACTATT	ref_4519_missing	0	0	0	0	0	0	0	0	0	0
CACCTGGGACAACTGG	ref_4519_missing	18	29	15	15	27	11	27	12	32	21
ACAGAGGTTATTGGCG	ref_4519_missing	0	0	0	0	0	0	0	0	0	0
AAAATTACCGACACCG	ref_4519_missing	24	12	21	17	22	14	19	17	22	15
AGACCCATTCTGAGGT	ref_4519_missing	3	5	3	3	3	3	2	4	5	2
TCGATTCGTACCCTTA	ref_4519_missing	0	0	0	0	0	0	0	0	0	0
ACTGTACAGATGACCT	ref_4519_missing	8	6	8	2	8	4	9	8	12	5
GAGAGTGATGGGCTTC	ref_3567_missing	13	35	25	30	21	20	33	22	28	11
TACTTCACGATGGCTC	ref_3567_missing	10	17	15	11	13	9	17	14	18	5
ATTTATTAAGTTTCAG	ref_3567_missing	3	6	9	6	9	8	14	4	5	5
AGAACGCAGCACCTAA	ref_3567_missing	14	18	13	14	19	6	19	15	24	11
GGCCCATGACGCTTTG	ref_3567_missing	44	64	50	35	56	42	53	40	56	40
AGCCTGGGCGTTTGTC	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
GATTGGGTCCACCGCC	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
TAATCTTCACAGTCAT	ref_4502_missing	10	30	24	20	20	17	35	11	28	20
GCGAACACTCTTCTGC	ref_4502_missing	34	51	35	20	59	23	42	22	61	22
TTGGGGCCGAATGTCT	ref_4502_missing	59	107	90	51	104	51	113	47	103	42
TCAGGGGTGTCAGGCA	ref_4502_missing	10	28	12	20	19	21	26	11	28	16
GGTTTAAAGAACTTTT	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
GCATTGGCTATTCTAT	ref_4502_missing	23	38	17	21	52	31	67	20	55	23
GTTTGATCCACCGGTT	ref_4502_missing	101	168	102	101	139	94	157	71	154	74
CATATTCTAAGTGGAC	ref_4502_missing	2	4	5	1	8	3	4	1	5	5
AACGTCTTTTCGTATG	ref_4502_missing	13	14	9	7	19	14	19	7	20	6
TTACCATTTTAATTAA	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
GTGTGGATAGATACTG	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
TACACTCTTGTCAGTC	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
GATGTTGGTTCTCTTA	ref_4502_missing	35	94	77	49	112	44	105	46	116	56
TTTTAGATAAAGCTTG	ref_4502_missing	44	62	49	49	72	53	80	45	95	31
GTTCGTGGGTTATTAT	ref_4502_missing	25	61	31	37	44	23	43	28	57	27
AAATCATTAATGAAGT	ref_4502_missing	18	18	21	22	25	17	31	17	42	12
CCGGAGCCTCCTAGCC	ref_4502_missing	84	118	128	90	127	72	153	74	158	74
CTGATCACTGGCCAAC	ref_4502_missing	28	49	24	29	42	23	52	20	59	27
GCGTAAGTCTAAGGAG	ref_4502_missing	8	9	3	3	11	5	9	13	9	3
GCTCCGAGATTCAGCT	ref_4502_missing	33	48	38	24	42	36	31	27	50	23
AATTTTCAATACTAAC	ref_4502_missing	5	15	7	13	14	6	12	3	12	4
GCGTGCTCTAAAATCT	ref_4502_missing	23	29	24	21	39	13	17	16	25	20
CGCTGATGAATAATCA	ref_4502_missing	7	11	7	3	12	5	13	6	5	1
TCTTTGAATTCGCATA	ref_4502_missing	0	0	0	0	0	0	0	0	0	0
GTATTGTTGACCGAAC	ref_4502_missing	2	9	6	1	10	4	4	2	11	1
CATCTTAATGTCCAGG	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
ACCATTTTCTTTCTTA	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
TAGCTTTTACCCAGAC	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
TGAAATCTTACCAGTG	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
CCCTGCCCACCACCGA	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
TCCTTCAGAGCTCGGT	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
GCGCCGTAGCTTATAT	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
TGCTCGATTTTCTACC	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
ATTCGCTCCATTTAAT	ref_3670_missing	0	2	0	0	1	0	0	0	0	0
GTAAGCGCGGCCCATG	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
GGCCTCACCGGCCTGG	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
CCTGCCTCTTTCCGGC	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
CCTAAACAGTGAGGGC	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
ACAGCTTCCACTATTC	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
GCATTTCGAGTTTTAT	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
CCAACCATGCTGTAGC	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
GAGAAGCGCGTTTGTG	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
TTCCCCACCCACACCT	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
TCATTTCAAGTTGATA	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
AAGTCTTTTCCGATGA	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
GGTAACACCCCATTAC	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
GATGCATCCGGGTTAT	ref_3670_missing	0	0	0	0	0	0	0	0	0	0
TGGGGGTGCCTATTTT	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
GTCTGCTGATTCACGC	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CTGAGAAGCGGGTTAG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CTTCTTTGAAGAGGTA	alt_3406_upstream	20	52	26	31	49	37	54	27	57	23
GTGCTATGCGGTTGTG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
ATTATTTTGGGGAATC	alt_3406_upstream	20	21	23	21	20	14	26	20	18	21
CTGTTGGGAGTATTTC	alt_3406_upstream	3	12	3	5	10	10	8	4	5	5
TAATTATGTTATTTTA	alt_3406_upstream	21	38	45	45	46	27	50	28	30	31
TGCCGTTCCATGATCT	alt_3406_upstream	92	133	137	115	157	87	171	96	142	81
GTAAATGCCCGGCTGA	alt_3406_upstream	12	17	10	4	13	10	12	11	14	9
AAACAGCTCTCAGATC	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
TAGGCGTTGCTTTGGA	alt_3406_upstream	1	3	1	3	0	1	3	3	5	3
TCCAGGCATCCTTCGG	alt_3406_upstream	17	103	29	21	82	21	93	21	97	8
TTAAGGTAAGGACATT	alt_3406_upstream	8	13	5	4	6	3	6	8	16	6
TCAAGATGCAAGCAGT	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CATATGCATACCTCCC	alt_3406_upstream	8	14	11	8	13	5	10	3	18	5
GTTATTCGATTGAGTG	alt_3406_upstream	56	84	76	64	99	48	93	43	82	57
TACTCCTGGTGAGAAG	alt_3406_upstream	8	21	9	10	12	8	15	7	9	8
GCGTCTTTCCATTTGC	alt_3406_upstream	7	2	6	4	12	6	5	4	6	5
CGACGCGGCGGGCGCG	alt_3406_upstream	56	69	58	84	74	50	101	52	85	69
TTACGCGCTGCCCTAT	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
TTACATTCCCCCATAG	alt_3406_upstream	33	41	20	25	40	21	44	15	62	15
GAGCATCTCGACAGTG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CGCCCGAATCCTACTA	alt_3406_upstream	28	75	52	42	66	39	67	34	65	32
TTGTGACCCTTTGGGC	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
TATCGTCGTTAATACT	alt_3406_upstream	10	11	6	4	8	7	6	8	10	9
TCGCAGGACTCTTGAA	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
TGAGTCTAGAAGCGTT	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CATAAGACCAAATAGG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
TCTCAGCCGTATCAGG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
GGACGGCTCCATATAC	alt_3406_upstream	162	269	224	195	279	160	318	168	282	140
CGGGCACGGTATATTG	alt_3406_upstream	20	31	25	17	35	19	31	8	37	26
GCGAAATGTTGGGTAT	alt_3406_upstream	11	26	17	21	21	13	13	16	23	8
GTGGGATTTTTTGTAC	alt_3406_upstream	25	29	21	27	33	12	27	26	33	12
TGCTAGCCCTGCACTG	alt_3406_upstream	31	66	22	44	62	46	67	33	50	38
TCATGGTCACTTATCT	alt_3406_upstream	16	24	15	19	30	26	25	19	31	12
TTGCCCTGATGCGCCC	alt_3406_upstream	40	58	47	39	63	36	57	29	54	48
ATAAGTTATCTCTCTT	alt_3406_upstream	5	17	3	11	14	5	8	11	10	8
CGTGTGATTTACCATT	alt_3406_upstream	11	15	8	17	21	15	19	17	24	17
AAACGTAGTTCACCTG	alt_3406_upstream	10	19	5	12	28	11	18	8	24	12
GATTTATTCTTCTCAA	alt_3406_upstream	68	71	59	41	61	41	59	43	65	50
CTCGCCTGGCGGGCTA	alt_3406_upstream	42	80	61	58	87	44	80	50	67	50
CACATTACTCCTTAGT	alt_3406_upstream	34	69	35	50	84	38	53	43	81	31
TTATATAACCGTACTT	alt_3406_upstream	9	10	17	20	19	19	21	7	26	13
TCAACCTCAGGAAGCA	alt_3406_upstream	28	29	49	37	55	29	40	23	40	23
CCGCCTATCAGGCGCG	alt_3406_upstream	9	26	12	16	37	15	32	9	43	6
GAACTAAGGCTGCGGA	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
GGTTTATTATACGCAG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CGTTCTACTGGGTGTG	alt_3406_upstream	16	72	40	39	62	31	69	41	71	27
TACATTGGCGTTGAAG	alt_3406_upstream	43	76	57	29	92	40	96	44	92	45
CTATCGTATTCTCGGG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
GAGTTGCCGCGTGCGA	alt_3406_upstream	3	10	3	3	12	5	6	5	7	3
TCAACGGAATCTATGC	alt_3406_upstream	63	75	64	49	50	50	81	39	90	52
GTAGAGTCCACTGTCC	alt_3406_upstream	41	79	67	68	88	52	78	54	77	40
CAATTAATAAGGTGAA	alt_3406_upstream	3	5	12	10	7	11	10	5	10	9
ATCCAACCTGGTGTTT	alt_3406_upstream	14	27	20	11	23	5	26	12	34	12
GACTGAACGAGTTTCC	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CATGCTCATTATGATT	alt_3406_upstream	33	47	38	37	65	30	60	26	51	41
GCACGCATTGTTCACG	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
TTTCCCTCCACCCACG	alt_3406_upstream	44	16	54	61	20	32	17	40	30	25
AATACCCAATAGACGA	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
ATAACCCCACCCATCC	alt_3406_upstream	20	25	30	13	35	17	24	16	11	18
TATAGTAAGTGTCACT	alt_3406_upstream	19	29	16	16	24	22	18	20	26	18
TAAGATGAGTTATTCG	alt_3406_upstream	12	26	23	20	16	17	25	18	17	10
CTCTGAATCTGCATGT	alt_3406_upstream	1	13	6	10	12	5	14	10	12	5
GATGCTGCTCTTTATC	alt_3406_upstream	24	35	18	28	46	26	37	28	40	26
CTCTTTCAAGACCGTC	alt_3406_upstream	10	17	12	8	11	12	20	16	22	13
AACTTTGAGTTGGTAT	alt_3406_upstream	0	0	0	0	0	0	0	0	0	0
CTAGCTCCATTTCAAC	alt_4322_missing	2	7	4	6	9	1	4	1	3	4
GTGGCTCTTTTCGACT	alt_4322_missing	0	0	0	0	0	0	0	0	0	0
CAACCTTTTAAAATGA	alt_4322_missing	2	3	2	0	4	2	3	2	7	1
ATCGTAAGCTACGAGC	alt_4322_missing	0	0	0	0	0	0	0	0	0	0
TTGCGTACTCGCTTTT	alt_4322_missing	39	89	51	46	96	42	83	43	94	59
AGAGCTTTATAATGGT	alt_4322_missing	30	56	37	30	80	27	62	24	55	24
GACAGTGATTCGCAAT	alt_4322_missing	35	92	49	41	89	42	93	37	124	34
CTCATATCTCTCGTAA	alt_4322_missing	16	45	26	21	44	13	35	27	59	14
GTGTCTGCGCTAAATA	alt_4322_missing	6	9	4	4	9	1	8	2	3	4
TAGTCTATAAGCATCA	alt_4322_missing	19	50	18	18	46	14	32	19	42	15
ATAGAGCATCAAAGAC	alt_4322_missing	0	0	0	0	0	0	0	0	0	0
ATTGTAACTAGACTCA	alt_4322_missing	15	27	24	15	20	13	30	15	18	13
TCCAATCCGCCTCTGT	alt_4322_missing	1	1	1	1	2	1	1	1	2	0
AAAGAACGAGCCTGGC	alt_4322_missing	2	7	4	3	3	3	10	3	0	3
GGATTATAGAGATCTA	alt_4322_missing	18	33	26	8	16	15	20	11	28	6
TTGTAATTCATCTTCG	alt_4322_missing	32	29	28	31	34	31	52	17	53	23
GGCGGATTTTCTTATT	alt_4322_missing	26	57	40	22	75	30	46	29	77	30
TGCAGTCACCATTCGT	alt_4322_missing	14	30	25	15	38	14	34	14	30	18
GCCCAGGCAAGTAGTT	alt_4322_missing	23	42	34	27	35	23	48	28	36	23
GAGACTCCTTTCTGGT	alt_4322_missing	11	17	16	12	28	9	25	10	30	13
AATGGTTCCTTTCGCG	alt_4322_missing	21	36	29	17	41	12	43	16	33	17
GACAGGGGTGGTGTCT	alt_4322_missing	37	96	64	47	80	50	91	30	109	47
AGCCGATTCTTTGGAA	alt_4322_missing	3	19	3	12	21	7	19	4	8	8
CGGTACTACTGAACAA	alt_4322_missing	42	99	75	49	96	48	82	53	115	54
CTTTTGAGCAGATCTT	alt_4322_missing	30	82	43	32	68	43	61	23	78	27
GTTTACTTTGACTGTA	alt_4322_missing	0	0	0	0	0	0	0	0	0	0
AGGTCGTGGTCATGGA	alt_4322_missing	8	14	17	13	15	12	9	10	16	6
CACAGCCTTCGAAAGG	alt_4322_missing	92	196	82	70	177	56	203	85	203	66
AGTTTCGGCTTAATTA	alt_4322_missing	11	28	10	16	19	11	27	12	19	13
CGTTTGATATACAACC	alt_4322_missing	21	22	12	20	17	14	38	17	32	20
CACGCGCTCTGTTAAA	alt_4322_missing	31	57	28	26	42	21	54	23	53	23
TAGGTCTAGTGGGTCG	alt_4322_missing	37	54	27	17	78	33	48	18	76	22
CCGCGACAGGGTTAAC	alt_4322_missing	0	0	0	0	0	0	0	0	0	0
GACTAAAGAGAGTTAC	alt_4322_missing	24	35	24	20	37	15	40	10	43	15
TCGGCCCGCATTATGA	alt_4322_missing	28	53	18	21	57	16	37	30	41	26
TTCAGGCTTGTTATTA	alt_4322_missing	28	31	12	15	36	12	39	21	39	20
CGGCCAAGTACGTTTT	alt_4322_missing	3	7	6	3	8	3	10	5	6	5
ATTCTTGAGGGCAATC	alt_4322_missing	0	0	0	0	0	0	0	0	0	0
TTTGTCTTTTTTGTTG	alt_4322_missing	2	3	1	2	4	2	5	0	5	3
AATCGCGCCCCTTCCG	alt_4322_missing	8	10	2	4	6	1	10	3	15	7
ATGAGTTCCTTTCGAA	alt_4322_missing	24	47	30	12	40	34	51	14	45	17
CGCTTTCTATGGTCCC	alt_4322_missing	7	15	15	4	5	2	20	4	6	5
ATGTTGCTACCAGACA	alt_4322_missing	54	87	59	45	89	44	91	44	123	36
ATACACTTATCCCCGG	alt_4322_missing	35	146	29	25	146	33	155	33	170	28
AGTGCTGAATTCAACT	alt_4322_missing	117	210	162	117	239	139	216	94	227	107
CTCAGGATATCTACAG	alt_4322_missing	0	0	0	0	0	0	0	0	0	0
TAGCGTCTCATCCGCG	alt_4322_missing	31	48	29	27	54	34	75	22	57	20
CATACCCAGCGGAATA	alt_4322_missing	4	12	9	10	18	8	30	9	12	4
CTTCCTGCGCGCGCCA	ref_3021_missing	20	28	6	13	44	18	29	8	41	6
GAACCAACTTGCTAGT	ref_3021_missing	21	43	22	17	33	18	47	16	43	16
ATGGCCAGTTGGTCCG	ref_3021_missing	57	151	76	56	151	54	137	61	166	55
GGGTTGGTCCTGGGGT	ref_3021_missing	0	0	0	0	0	0	0	0	0	0
TATGCGTTGACTAGAT	ref_3021_missing	0	0	0	0	0	0	0	0	0	0
ACGATTATGCGCATCC	ref_3021_missing	0	0	0	0	0	0	0	0	0	0
ATTTTAGGATTGTCTG	ref_3021_missing	0	0	0	0	0	0	0	0	0	0
GGCCTATGGCGCACGT	ref_3021_missing	1	0	0	0	1	0	1	0	0	0
GGTCGCAGCCCCATTG	ref_3021_missing	18	72	36	40	65	24	68	22	70	20
TGCATTTAAGTGCCTC	ref_3021_missing	2	5	1	3	8	2	5	1	7	4
CGATTATGTATCGTTC	ref_3021_missing	2	17	11	11	13	1	9	7	7	5
TGTGGAGTATATTCTT	ref_3021_missing	9	9	5	2	3	8	5	8	10	3
TTCAGCTTCGACGGAG	ref_3021_missing	7	8	10	4	15	8	13	3	23	4
CACTGTATGGGGTCGA	ref_3021_missing	7	30	13	7	41	12	35	13	43	8
GTATTTGTACCAAGAA	ref_3021_missing	8	20	12	15	13	11	19	10	18	7
TGTGCGCCAAATGCAT	ref_3021_missing	21	45	16	14	33	22	42	8	59	16
GGATCATCTTTACTAG	ref_3021_missing	0	2	3	2	1	1	1	0	3	1
CTGATACTTTATGTTT	ref_3021_missing	88	165	141	88	181	91	168	87	157	85
ACCTCTCCGACTGGTA	ref_3021_missing	26	80	25	27	81	22	89	22	101	23
GGGTGATGTAACCTCT	ref_3021_missing	23	40	29	16	31	20	31	16	51	35
CCTAGATCAACCAGTA	ref_3021_missing	0	2	0	0	5	2	2	0	5	1
TTCTGGAATGGACGAT	ref_3021_missing	10	12	5	5	18	5	18	3	15	4
TGCTCACACTAGAGAC	alt_3852_missing	19	18	18	20	16	14	19	8	19	15
CGTGCCGCCCTACTTA	alt_3852_missing	0	0	0	0	0	0	0	0	0	0
TGATGTGGTTCACCTG	alt_3852_missing	41	55	69	44	75	31	67	52	49	35
CCCCAGTGTGCGTTGC	alt_3852_missing	12	15	9	10	7	3	12	8	9	9
GCATACTACAGCTCAG	alt_3852_missing	5	3	10	7	3	2	3	9	1	2
GAGCTGGGGATACTCC	alt_3852_missing	43	67	56	50	55	55	58	39	69	52
TTTCCTCTTTGGATAC	alt_3852_missing	53	73	72	35	86	50	61	47	97	52
AAAAGGTATAGTGTGG	alt_3852_missing	10	6	4	7	16	7	12	3	5	3
TTCACGCTATTCTCCG	alt_3852_missing	12	15	20	21	25	9	21	22	29	18
AATAGTTAAGTTTCAT	alt_3852_missing	36	24	52	34	46	42	32	39	41	34
TGTTCGATCTACTTTA	alt_3852_missing	27	32	27	30	32	15	35	21	43	18
ACTGTATAATTTGGCC	alt_3852_missing	31	15	28	32	31	27	24	17	33	24
CGTCCATGTCCGACCG	alt_3852_missing	15	16	19	12	14	13	20	6	23	18
TACCATGCTTTGTAAC	alt_3852_missing	26	50	52	44	62	45	57	40	53	31
CAGTAATTGTTATCTC	alt_3852_missing	8	13	14	13	14	17	18	11	18	11
CCGACGGATGCGCGTG	alt_3852_missing	45	44	46	43	52	35	48	37	47	47
GGCTAACACTTGCCGT	alt_3852_missing	14	19	18	17	11	12	13	11	19	15
GTTTTGCTGTATTGTG	alt_3852_missing	0	0	0	0	0	0	0	0	0	0
CGTAAGTCTGCTATTA	alt_3852_missing	13	33	14	22	31	24	27	15	22	20
GGCCTTAGCTGGCCCT	alt_3852_missing	0	0	0	0	0	0	0	0	0	0
TAAGCATTAGGATAGG	alt_3852_missing	0	0	0	0	0	0	0	0	0	0
ACTTTCGCATTGAATT	alt_3852_missing	26	22	39	31	28	29	34	26	31	28
GTGTGCTTGGACCCTT	ref_5760_new	88	107	102	74	107	66	115	84	103	73
CTAGAAGCGCCCCGTC	ref_5760_new	0	0	0	0	0	0	0	0	0	0
GCCTCGAACCTTCGAT	ref_5760_new	11	38	24	12	32	13	31	8	35	14
CTCAACCGCGCCTTGC	ref_5760_new	0	0	0	0	0	0	0	0	0	0
TCGGAACAATTGTTGG	ref_5760_new	0	0	0	0	0	0	0	0	0	0
TATTCCCACCAAATTT	ref_5760_new	0	0	0	0	0	0	0	0	0	0
GTTTACGCTTTGACCT	ref_5760_new	35	35	42	22	44	34	59	31	36	26
CTATCGTGCGCAATGT	ref_5760_new	113	217	140	115	246	109	231	117	259	108
CGTTGATCGCCTTAAC	ref_5760_new	17	25	19	24	27	12	26	18	11	25
GACTGGGGAACTTTGT	ref_5760_new	73	77	95	66	100	75	101	69	81	67
TATTTCCATTAAGAGG	ref_5760_new	285	384	345	258	401	234	357	278	415	214
TACTGCTCGGTGCCGG	ref_5760_new	9	19	16	13	15	16	25	17	17	13
TCCAGTCTCACATCTT	ref_5760_new	0	0	0	0	0	0	0	0	0	0
CCAATCCGTGTTTTTG	ref_5760_new	105	102	87	71	93	69	98	72	102	57
GCGGTAGACGCACGTT	ref_5760_new	101	119	128	84	109	93	128	86	125	87
TTATGTTGTAGCCTGG	ref_5760_new	135	200	150	114	208	131	193	151	214	101
GCGCGAAGCCTCTGTG	ref_5760_new	13	29	19	17	29	19	19	12	40	22
TACAGGGCGCCTAAGT	ref_5760_new	23	32	30	30	32	30	29	15	32	21
TTAGCGGTATCCTCTA	ref_5760_new	9	14	17	9	13	9	17	7	10	9
TCTATAACCCACTCTT	ref_5760_new	0	0	0	0	0	0	0	0	0	0
TTCGCAACTACCGGTC	ref_5760_new	55	105	84	69	120	69	111	65	146	58
TTGGGTGGTACTCTCT	ref_5760_new	24	29	19	29	34	20	28	12	25	19
CGCTTCTCGGCGGCGT	ref_5760_new	35	53	44	34	40	34	35	46	37	49
CGCCCATAGGGATCCT	ref_5760_new	19	21	8	9	23	17	13	13	10	11
GGTTCTCATGACTCCA	ref_5760_new	55	65	49	46	56	38	57	27	62	46
TTAGGTTTCAGGACAC	ref_5760_new	39	59	45	38	54	32	49	36	50	36
AAAAGTGCCTTTCCAT	ref_5760_new	137	138	162	113	178	99	182	118	159	108
AGTTCTTGATCGCCGT	ref_5760_new	10	15	14	9	10	17	16	15	21	15
ATTGCCGGTAAGCTCC	ref_5760_new	8	9	6	4	12	8	6	6	9	2
CTTTAACGGAAAGTGC	ref_5760_new	92	89	111	78	90	86	97	84	122	86
TAATTACTGTGTACTT	ref_5760_new	95	133	92	84	107	114	156	78	169	89
GCAGTTTGTTAGTTCA	ref_5760_new	37	41	32	47	40	26	53	23	50	21
GCGTATATTAAACTCG	ref_5760_new	24	22	34	25	29	21	21	15	29	23
GGATTGCAAGCGATCG	ref_5760_new	85	96	82	73	87	67	91	74	116	71
TGGATTTTTACAAGGT	ref_5760_new	33	42	52	43	38	47	63	38	59	36
GCCCCACTTTGTGCGC	ref_5760_new	0	0	0	0	0	0	0	0	0	0
TAAGCTATGGTGACCT	ref_5760_new	20	36	26	29	26	25	37	19	36	22
AGCGTCGGTGCGACAT	ref_5760_new	15	25	20	21	23	11	32	13	20	10
TTCATTGGGTTTTACT	ref_5760_new	6	3	7	6	13	9	14	4	14	10
GCTGTGTCGGTCTCAA	ref_5760_new	0	0	0	0	0	0	0	0	0	0
GGTTGTGTCCGGGAGG	ref_5760_new	38	72	58	41	49	33	63	38	86	38
AGTCCCGCCGGATTAA	ref_5760_new	48	64	57	54	70	53	76	61	77	42
ATGCATTTATCGCCTC	ref_5760_new	0	0	0	0	0	0	0	0	0	0
TTCTAGGTTCGATGGA	ref_5760_new	11	20	18	14	19	12	18	13	20	18
TTCAGGGAATTCTCGG	ref_5760_new	0	0	0	0	0	0	0	0	0	0
TTGGCAATGTTTCTTG	ref_5760_new	5	9	12	8	16	15	15	8	17	10
TTTTCTCTAGAACAGT	alt_5751_new	0	0	0	0	0	0	0	0	0	0
TTTGTCAGTTTATTTT	alt_5751_new	29	41	38	20	36	31	25	21	32	21
GCCACCTTCTCGATCT	alt_5751_new	9	12	7	13	8	9	12	15	15	9
ATATCTATGTCTAGGT	alt_5751_new	111	114	146	136	119	122	127	110	150	98
TGGTTTTTTCAGGATT	alt_5751_new	0	0	0	0	0	0	0	0	0	0
TGGCCTTGTAGTGAGG	alt_5751_new	54	54	56	46	47	34	46	54	47	49
ATTACGATTTTCGCGT	alt_5751_new	0	0	0	0	0	0	0	0	0	0
CGCGCCTAAAAATGCT	alt_5751_new	28	21	39	30	15	28	36	32	31	22
TTATCCTTTCTGGATC	alt_5751_new	0	0	0	0	0	0	0	0	0	0
AAGCCCGTCCAAATTT	alt_5751_new	0	0	0	0	0	0	0	0	0	0
GAGCCCTTCTTGTCGA	alt_5751_new	0	0	0	0	0	0	0	0	0	0
ATGTAGTTTTGTCTTC	alt_5751_new	0	0	0	0	0	0	0	0	0	0
GGACTTCTACGAGTTT	alt_5751_new	0	0	0	0	0	0	0	0	0	0
AGCGCTACCAGCCCAG	alt_5751_new	10	16	11	11	9	10	14	16	12	7
CAGGTCATATCATTGT	alt_5751_new	13	17	6	9	25	4	20	6	25	7
AGGTTTTGTTGCCGTG	alt_5751_new	46	39	51	51	56	45	49	43	38	30
CGCTACACGCGGTTGT	alt_5751_new	0	0	0	0	0	0	0	0	0	0
ACAACCATATTATCTA	alt_5751_new	0	0	0	0	0	0	0	0	0	0
TAGCTCCGCAGTCATG	alt_5751_new	44	55	59	47	38	47	45	35	40	34
CAACCCGCTTATGGTG	alt_5751_new	3	3	6	4	2	6	4	6	4	4
CTTCGCATTAGTATAA	alt_5751_new	0	0	0	0	0	0	0	0	0	0
GGCGCATAGGTATCTG	alt_5751_new	26	26	41	15	25	15	19	23	32	24
TATGAGGCCTGACGTT	alt_5751_new	40	39	52	32	46	45	34	57	49	42
AAATTTCTATGGTTTG	alt_5751_new	80	84	91	61	76	84	72	82	70	67
ATTTTCATCCTGTCCA	alt_5751_new	27	31	45	26	32	17	40	24	34	18
CTGGATGGCAGCTACT	alt_5751_new	25	23	31	14	20	33	16	22	34	16
GCCACCATTTTACCGT	alt_5751_new	158	201	236	223	235	189	231	176	253	169
CGATAGGTGACTAACG	alt_5751_new	0	0	0	0	0	0	0	0	0	0
GCGTACATGGGCACAG	alt_5751_new	0	0	0	0	0	0	0	0	0	0
AAAAGTCTCGTTGGCC	alt_3700_missing	123	51	116	98	58	111	58	86	81	91
AGGGTGATATTGATAG	alt_3700_missing	272	154	314	235	182	277	149	263	157	192
GCGAGAGCAGGTTCGT	alt_3700_missing	20	10	19	23	4	8	2	14	22	5
ATACATGGGGCCGTTA	alt_3700_missing	22	14	25	25	11	16	13	40	25	18
GCATCTTCGCACTACC	alt_3700_missing	43	27	39	43	38	41	31	48	32	39
ACGGTTGTCGGATATT	alt_3700_missing	431	234	549	483	301	396	268	418	298	365
GCCTTGTGCCCGGTCA	alt_3700_missing	70	74	128	90	66	69	85	91	72	100
AGTCTCAACCGAGTTA	alt_3700_missing	170	100	189	188	100	162	93	175	115	150
CCTTTGCTGTATTCTG	alt_3700_missing	41	24	50	50	26	41	25	35	32	25
GCCGACGATGTTTATG	alt_3700_missing	6	13	16	13	11	15	5	8	11	11
CAGTCGTCACCTAGCG	ref_5166_missing	0	0	0	0	0	0	0	0	0	0
CCTTGTACGGCTAGGC	ref_5166_missing	31	35	22	16	44	16	32	23	49	25
TGAATGGGGTCTTAAT	ref_5166_missing	61	64	52	52	85	56	83	49	63	63
TTATGGTCTATTTCGG	ref_5166_missing	18	35	21	28	27	22	28	22	49	9
ACTGCAGTATCGCTTC	ref_5166_missing	0	0	0	0	0	0	0	0	0	0
CTAGGATCTGTATGGC	ref_5166_missing	5	18	5	5	18	8	12	2	18	8
TCTGTCACAGGTCTTA	ref_5166_missing	1	0	0	0	0	0	0	0	2	2
TCCGGGTGCTCCTAAG	ref_5166_missing	17	21	21	20	33	22	38	17	23	26
TGTTCCATTAGGCCAT	ref_5166_missing	18	21	14	15	16	11	16	15	16	17
CGCGACTCGACCTTCG	ref_5166_missing	0	0	0	0	0	0	0	0	0	0
GCCCCCTCGTGGCTAC	ref_5166_missing	5	14	7	4	13	8	11	10	19	3
TGGTTCATGTTCTCCT	ref_5166_missing	46	79	42	47	86	54	90	63	75	53
CGGTTCTGATTTCCAG	ref_5166_missing	5	3	8	5	14	6	10	6	11	5
ATTGAGCATGTTCGGA	alt_2415_missing	13	26	10	22	22	21	20	20	28	10
TCGATGGCACTGCTGC	alt_2415_missing	37	45	35	26	46	36	53	37	60	25
TTCTTGGGGATAGAGA	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
AGTCATATTGTTTCAG	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
CCTCAGTTATCTTAAA	alt_2415_missing	6	22	9	6	20	5	11	14	13	9
CAGTTCTGTGCACATG	alt_2415_missing	25	67	33	25	72	19	72	22	79	24
CTTGACTTTTTACCAT	alt_2415_missing	8	12	8	2	26	2	18	5	19	8
TCGTGAATTTCAGTTT	alt_2415_missing	132	230	149	130	212	130	237	113	281	123
ATTGGCAGCCAGTGTC	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
CATCTGTGATGCGGGG	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
TGCGTCGACTCCCGTC	ref_2415_missing	111	333	106	95	337	88	376	98	360	63
TACAGTTAGAATCTAC	alt_2415_missing	0	2	1	0	2	0	1	2	7	2
CAATCTAAACTAGGTT	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
GCTGAACCTTGTGTTA	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
CCCGGTCTCGTTTGAG	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
GTTGGATATGGACTCA	ref_2415_missing	9	20	18	24	21	11	30	12	30	12
GTGTTGTTCGGGCTGT	alt_2415_missing	30	54	40	33	70	25	52	25	61	26
TGTCGTATTCCTACCA	alt_2415_missing	104	167	138	126	190	127	194	106	201	111
GGTGTGCTATCGGTGA	alt_2415_missing	12	17	8	9	30	9	18	9	23	5
CCATTCTCAGCTCTAT	alt_2415_missing	7	28	24	18	42	24	35	29	34	21
GGCTCAACCCGTTAAA	alt_2415_missing	36	59	25	21	44	31	63	27	43	18
GGTATTGATGCTGTGA	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
CCTACATAAGTATTTT	alt_2415_missing	10	10	17	6	15	10	14	8	21	9
AATTGCCGGTATGTTT	alt_2415_missing	0	0	0	0	0	0	0	0	0	0
GCGTAAATCACCTTAA	alt_2415_missing	33	52	44	34	53	26	58	23	41	24
CAACTGTTTTTTTTGG	ref_16_upstream	9	41	25	16	38	25	35	9	31	13
TTTGCGCCGTTTCCGG	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
TCATACGGGATTTACG	ref_16_upstream	30	46	20	35	46	18	48	32	48	17
CACAGGACTTGTCTCA	ref_16_upstream	12	27	6	10	44	15	30	12	39	12
TATCAATACTGTGGGA	ref_16_upstream	0	0	2	0	2	4	8	0	2	1
GGCTTTAAAATTCGGC	ref_16_upstream	5	14	10	7	22	6	14	11	24	7
TCGGACGTGAGTCGTC	ref_16_upstream	18	21	15	23	16	20	22	15	22	6
TTGCAATCCATTGCGA	ref_16_upstream	23	23	14	15	30	21	34	14	37	17
TACGATCCGCGCTGTT	ref_16_upstream	5	19	12	15	16	11	23	14	17	6
CCGGTCACCGTTGGTC	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
ATGCTGCTCAGTTTTA	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
TCGTTTGCAATGTAAT	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
CCTACCGTAGACTCTG	ref_16_upstream	7	26	19	8	23	7	36	8	34	4
GCCAAATTTAGTACTG	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
GTAGGTGCCGCTTTTA	ref_16_upstream	15	33	15	18	33	16	41	13	30	12
AATCTTTCGCTGATTA	ref_16_upstream	8	15	10	13	15	7	10	3	19	5
GTTGTAAGAGCGCAAT	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
GAATTGTTGTTCATAG	ref_16_upstream	6	10	4	4	7	2	9	10	7	7
ACTAGGGACTAGGATA	ref_16_upstream	22	13	16	12	19	6	22	8	37	5
GTTAAGAAGTCCTAGC	ref_16_upstream	15	42	19	24	50	20	55	15	38	18
AGACCGCCATGTCTAT	ref_16_upstream	6	19	16	16	19	6	21	11	15	7
CCTTATAACAGCGATG	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
GCATAGTTGAGTGGCA	ref_16_upstream	2	14	3	3	11	5	5	1	12	6
GAAATAGGCCCCAATG	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTATGGCTATGGT	ref_16_upstream	18	25	39	17	48	22	49	25	50	22
GCCCGACACTCTCTGG	ref_16_upstream	18	44	22	17	50	11	37	9	52	17
CCATAGGTTGGTTCCC	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
GCAATGTCTGTCTGGA	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
AACGACGGGACGTGAT	ref_16_upstream	7	11	9	6	13	5	13	3	9	6
TACTGCCAAATCGCGT	ref_16_upstream	13	32	16	17	43	17	40	12	53	7
TCCAGTCCTCAGGTCG	ref_16_upstream	14	37	13	8	25	13	33	7	17	10
ACTAGGAACTAGGATA	ref_16_upstream	5	5	0	1	2	1	4	1	3	0
CCCACATCTGGTTAAT	ref_16_upstream	2	12	1	2	6	2	5	2	6	1
TGTAGCTGGTCGTCGC	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTAATTATTGTTA	ref_16_upstream	15	17	3	11	1	4	12	7	15	4
AGCTAATCGCGGCAGA	ref_16_upstream	37	51	26	36	61	27	46	29	56	28
TCGGGTATGTCTCGGC	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
TTGGTTACTGTCTAAC	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
CCCGTTTGGTAGGGCT	ref_16_upstream	20	40	15	14	65	21	48	14	50	11
CTTTTGACAACCCGGG	ref_16_upstream	89	134	107	79	153	73	134	64	148	63
GAGAATGCCGCGTCCC	ref_16_upstream	1	9	7	3	7	4	20	3	5	9
TATGCAAAACGAATAA	ref_16_upstream	10	33	15	18	53	13	31	16	37	4
ATGAGGCCCCATATCG	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
TCCTTCCACATCGTGG	ref_16_upstream	10	17	14	8	20	12	22	14	16	13
GATTGCTACGATAAGT	ref_16_upstream	36	75	51	21	54	40	60	30	65	38
CCACTGAAATTTTTAT	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
CATAAAGATTTATGTA	ref_16_upstream	6	12	12	4	11	11	22	11	7	7
GTGGTTGGAGGTTAGA	ref_16_upstream	10	18	9	4	13	5	13	4	15	4
TTCTAGTTTACAAGGG	ref_16_upstream	24	50	39	33	56	15	49	30	45	26
TCTTCTAGTTGAAGGG	ref_16_upstream	18	45	16	24	32	13	44	7	42	11
ACTCGTTGACTCGTGG	ref_16_upstream	24	57	15	19	77	12	80	11	54	16
TTATGAAATTCTGGAG	ref_16_upstream	0	0	0	0	0	0	0	0	0	0
TTTATGATTGCGTTAT	ref_16_upstream	21	20	15	11	31	13	28	18	22	14
ACGAGCATTGACCTTT	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
GGTGGTTGAGGGTCTG	alt_4848_missing	47	45	46	36	55	23	50	27	70	33
AGGTCCTGGCCCCTGT	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
TGCCCCTAACGATCCA	alt_4848_missing	26	15	22	12	22	15	9	22	14	20
CATATTCCACTTCAAT	alt_4848_missing	62	83	64	53	56	46	113	37	84	61
TCATTCGGTTACTTAG	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
TCCACTCCAGATATGC	alt_4848_missing	6	15	9	4	13	2	11	7	16	5
CTGCATCATACGCAGT	alt_4848_missing	5	11	4	7	18	7	12	3	9	4
CGCAGTTTCAACAATG	alt_4848_missing	5	13	18	9	15	8	16	13	16	7
GTTACTTAGCGTACGT	alt_4848_missing	13	22	12	15	23	14	16	10	11	5
ATACCTAGCGCTGTTG	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
TTCTGTAGCTCGGTTC	alt_4848_missing	9	5	6	4	5	3	8	7	17	7
GTGACATCACACTTTG	alt_4848_missing	36	40	31	17	39	24	34	31	28	27
AGATTAAACGTCTCGG	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
CTCAGGGTTCGTAGGT	alt_4848_missing	15	35	24	21	26	18	39	25	30	12
GAGCTATGCATGTTCG	alt_4848_missing	7	16	11	5	17	13	14	12	18	12
ACGTCCCCGTAGTTAG	alt_4848_missing	1	2	0	1	1	1	2	0	2	0
GTCCATGCAGTAAAGC	alt_4848_missing	42	56	60	51	64	30	69	40	57	48
TACACAAATGGTCACG	alt_4848_missing	2	5	6	3	3	2	5	2	7	5
AATTTCTTACCGAGAA	alt_4848_missing	3	6	1	3	3	0	3	1	5	3
GGCTAACTGAAATCTA	alt_4848_missing	40	44	51	55	56	37	71	39	48	44
CCTGGTCCCTGCTTCT	alt_4848_missing	15	12	12	5	15	9	19	7	23	10
ATCACGTCTGCACTTT	alt_4848_missing	11	3	3	2	7	0	7	5	6	1
ACAGTTTGCCGCTGCC	alt_4848_missing	43	55	39	42	51	31	58	32	57	22
CGGTCCGTCATTCACT	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
GTTGGGTTAGCTTAAT	alt_4848_missing	13	31	22	8	31	14	21	19	22	13
TTTTATCATATCCTGG	alt_4848_missing	33	33	42	19	36	15	33	28	42	31
CTGTGGGTCGGCTAGA	alt_4848_missing	10	13	8	8	12	9	13	8	12	12
GGTGAACTAAGCCTGC	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
GTTGTAACAGTTGGTA	alt_4848_missing	32	67	46	38	62	37	68	38	59	39
AGTGATGATTATATCA	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
TGCCACAATCTATCTA	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
CAGCTACATGCTGGGC	alt_4848_missing	20	24	19	21	23	20	31	17	45	17
CGTAAGGGTCATTTCT	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
CGCGGTAGGCCTCTAG	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
TCTTTTCGTTATATCG	alt_4848_missing	16	10	18	20	28	21	20	6	17	13
TAGTAACGCTGTTTCC	alt_4848_missing	69	57	70	51	64	50	65	52	60	39
GTCTCCATACATTAAT	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
AGCATTGGTGAAACCG	alt_4848_missing	8	9	11	9	16	9	11	12	8	8
GCTCGGTTCCCCTTAT	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
TGATTCAATACTACAG	alt_4848_missing	0	0	0	0	0	0	0	0	0	0
CTTTTGATTCCCTAGA	ref_3416_RC	0	0	0	0	0	0	0	0	0	0
TGATGATCTTGGAGCG	ref_3416_RC	2	1	1	2	1	0	1	3	0	2
GGTATGGGTATTTGAT	ref_3416_RC	0	0	0	0	0	0	0	0	0	0
TAGTTCTTAAGGGGCT	ref_3416_RC	8	6	10	12	4	6	3	7	4	12
CCCAATCATGCTGACA	ref_3416_RC	40	34	50	43	27	39	36	49	30	27
ATTTGTATCGTTATTC	ref_3416_RC	47	34	43	48	32	48	41	50	49	39
TGTGTTTCTTTTTGTT	ref_3416_RC	0	0	0	0	0	0	0	0	0	0
AATTCCATGGCTGCTG	ref_3416_RC	42	48	68	54	29	54	39	75	37	57
TATACTCTGTCATTTG	ref_3416_RC	0	0	0	0	0	0	0	0	0	0
TATGTAAACTAGCCGA	ref_3416_RC	35	30	65	38	41	31	32	43	26	23
ATCATGTTTGCCTGGC	ref_3416_RC	57	72	61	72	72	85	67	70	66	76
TATATGTTGCATGACT	ref_3416_RC	6	3	8	3	5	4	3	5	7	7
CCACTGTATTGTAGAA	ref_3416_RC	14	11	14	11	15	11	21	20	10	12
TGAACCCCTTTGCGCT	ref_3416_RC	14	13	21	23	13	17	12	12	7	13
CGCACGTTTCTTTGCC	ref_3416_RC	0	0	0	0	0	0	0	0	0	0
TCTCGCTGGTCGTTGT	ref_3416_RC	29	20	27	30	19	29	25	20	15	19
GGGCCCCTCCAATATC	ref_3416_RC	15	13	27	27	14	19	25	16	13	14
TCAGTTATTTCTTGTG	ref_3416_RC	25	25	54	29	24	40	42	27	38	25
GTAGTATAAGGTCGCA	ref_3416_RC	0	0	0	0	0	0	0	0	0	0
CTTAGCATTGCTACAC	ref_3416_RC	28	48	64	48	43	44	71	49	54	33
GTCTCACCACAGGAAT	ref_3416_RC	0	0	0	0	0	0	0	0	0	0
CCGACTGCCTCTTTCT	ref_3416_RC	14	42	34	23	44	23	39	29	55	28
CGTTTTGTGCACTTGT	ref_3416_RC	15	19	16	17	5	14	11	12	6	9
TAGGTGGGGTTTAAGC	ref_3416_RC	184	147	233	177	121	165	199	124	167	146
GCTTGTATGGTCCTAC	alt_5991_new	12	12	15	24	10	15	5	17	18	19
CCGCACTGCTTACCCC	alt_5991_new	13	64	18	17	55	20	55	14	63	14
CAGCTGACACGATAGG	alt_5991_new	31	18	37	27	21	39	36	28	22	23
CTTCGTAACGTGTGTT	alt_5991_new	5	3	4	5	7	2	6	9	2	10
TGTACTTGGGTTTAGT	alt_5991_new	65	113	92	75	90	76	94	73	107	57
CCCTGCTGCCGTTACT	alt_5991_new	20	27	49	44	51	25	44	36	24	26
ATGTTCGGTTCTTGCA	alt_5991_new	47	54	66	56	74	48	58	41	90	68
TGCCCGTGACCGTAAC	alt_5991_new	0	0	0	0	0	0	0	0	0	0
AGAAAGAGACAGCTCC	alt_5991_new	25	23	32	23	18	23	26	26	11	30
AAGAGCATGGGTTACG	alt_5991_new	136	164	177	169	155	147	167	149	160	143
ACTTAACTAGGCTTTC	alt_5991_new	32	28	32	32	27	21	22	34	30	33
GACGCCAACTACCAGA	alt_5991_new	0	0	0	0	0	0	0	0	0	0
AACAAGGCTCAGGCTA	alt_5991_new	53	56	47	47	74	43	76	62	39	40
TGATGAGTTTCATGGT	alt_5991_new	5	5	5	4	5	4	6	4	10	5
TTTTAACTTGAAATCC	alt_5991_new	31	30	31	37	33	25	39	23	20	29
GAGTGCCTGTGTCCCT	alt_5991_new	10	12	9	14	9	5	10	7	10	9
CGATGTGTGTAGGAAG	alt_5991_new	12	9	12	8	9	12	15	9	30	14
CAGCGCATTTTATCAA	alt_5991_new	80	132	148	101	110	107	127	93	161	106
TCAACGTTTTGAAAAC	ref_6035_new	15	32	12	8	23	10	34	12	37	18
ATCGCTGCAAGTGTAG	ref_6035_new	0	0	0	0	0	0	0	0	0	0
ATTTGTATCCAATCAC	ref_6035_new	17	24	19	25	28	13	31	23	30	21
CCGCTTACTCCTTACT	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GTGACATGCAGAGTTG	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GGGATCAGACCTGGTA	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GGTTAGCATAATCTTT	ref_6035_new	6	4	5	12	2	7	9	4	12	4
GCGTGGTTTATTGGCG	ref_6035_new	5	14	4	5	13	4	15	1	6	2
GTTAGCAAGTTTTTAA	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GCTTCTGCAGGAAGGG	ref_6035_new	0	0	0	0	0	0	0	0	0	0
AGCCTTCAATGGATTC	ref_6035_new	1	4	1	1	4	3	0	1	5	1
CTTCCTTAGTGTAGCT	ref_6035_new	16	30	21	16	22	16	27	21	27	11
TATAGCACGCACCATT	ref_6035_new	0	0	0	0	0	0	0	0	0	0
ATTACCATCGAGAGAT	ref_6035_new	0	1	1	2	3	3	4	1	3	0
AGGTCGCCCGCCTTGA	ref_6035_new	0	0	0	0	0	0	0	0	0	0
TCCACGGTTTTTAGTT	ref_6035_new	8	16	10	13	9	13	30	10	18	13
TTTAATTATTTTTCTA	ref_6035_new	0	0	0	0	0	0	0	0	0	0
TGATGTGCGTTGGTAT	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GGACCTACCCGCACTC	ref_6035_new	5	19	11	15	8	12	13	6	28	2
CCAGCAGTGCCGTAAC	ref_6035_new	0	4	1	0	11	4	1	1	4	2
GCAAGGCTGATTTGGT	ref_6035_new	2	10	7	3	3	1	7	6	13	2
TGTTCTCCGTTCCGTT	ref_6035_new	8	15	14	5	12	2	6	8	13	2
GTGTATAACGGCTTGA	ref_6035_new	0	0	0	0	0	0	0	0	0	0
TTACCCATGTTCCTTG	ref_6035_new	53	101	74	53	134	53	125	34	116	67
GTGTGGCTCAATTCGC	ref_6035_new	4	3	4	8	5	0	3	4	4	3
GTGGGATTCTTATGCT	ref_6035_new	37	52	23	24	49	34	47	28	52	20
TGAGCCAGTGGGTGAT	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GCTCGCTGTGAGGTGG	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GCGCCTTTTACTGGGT	ref_6035_new	2	17	14	15	18	13	17	8	12	4
TGGCGTACAAGGTACC	ref_6035_new	0	0	0	0	0	0	0	0	0	0
GTGCTTAAGAAGTTGT	ref_6035_new	0	0	0	0	0	0	0	0	0	0
AAGAGCTTAGAATTTT	ref_6035_new	0	0	0	0	0	0	0	1	0	0
TACGCCGTATCCATTT	ref_6035_new	0	0	0	0	0	0	0	0	0	0
CCTCACACCTGCTCAG	ref_6035_new	0	0	0	0	0	0	0	0	0	0
CGAAGCTCGCGATCCG	ref_6035_new	0	0	0	0	0	0	0	0	0	0
TTGGGGTCCCTGATCG	ref_6035_new	9	21	9	6	10	7	10	8	22	7
ATGGAGGCAATATCTA	ref_6035_new	10	17	9	14	12	4	19	11	13	7
CATGTTTTAGGCATTA	ref_6035_new	31	67	34	37	70	26	64	31	104	35
TCTGGTAGTAAAAAAT	ref_6035_new	26	37	30	17	38	19	28	23	29	16
GTACTCTGGGGCGATC	ref_6035_new	12	29	16	8	22	17	21	13	27	9
TAGCTAGGTCGTTATC	ref_6035_new	0	6	5	2	6	4	9	4	14	6
AAAATATTATAGTTGC	alt_5445_missing	80	91	92	92	91	85	93	58	99	78
TCGGTAAAACTGCCCC	alt_5445_missing	60	78	59	54	102	62	82	43	94	58
AATCATTCTTCCCATG	alt_5445_missing	0	0	0	0	0	0	0	0	0	0
GTCATTCCGACGTCCG	alt_5445_missing	21	26	20	18	23	24	23	17	32	20
TTGCCCTCGGGAGTGG	alt_5445_missing	10	3	9	4	12	5	6	8	4	8
AGTCGATGTTACGGTG	alt_5445_missing	31	27	40	31	34	30	51	37	51	32
TGATCCCTTGTTCAGC	alt_5445_missing	8	16	21	14	23	8	18	8	16	16
ACGGTGGTAGCTATGA	alt_5445_missing	149	158	198	152	156	145	191	147	156	132
TGGTTAAACTCGAAGG	alt_5445_missing	16	9	7	11	7	12	10	8	12	6
CTATGTCGCTTTGGGT	alt_5445_missing	22	31	32	16	23	27	22	26	26	16
GTTCCCAAGCAATACG	alt_5445_missing	0	4	4	4	3	2	2	2	8	2
TTAAAGCATACTGCCC	alt_5445_missing	17	11	15	4	11	9	9	7	15	9
TGATTCAGTTCCGCTT	alt_5445_missing	0	0	0	0	0	0	0	0	0	0
ATCGTACCGTTTATAT	alt_5445_missing	9	11	19	18	13	22	13	18	13	20
TTTATTTGTTAAAACG	alt_5445_missing	76	55	92	61	88	62	84	85	88	68
CGGCGGTCGGTACCCT	alt_5445_missing	0	0	0	0	0	0	0	0	0	0
CTGATTTTCGGGGCTT	alt_5445_missing	97	95	112	106	119	98	121	83	109	82
CTGCCGTTTCAAGACG	alt_5445_missing	2	1	1	8	2	1	1	2	3	5
AGTACATAATCTGTCC	alt_5445_missing	16	20	17	16	23	13	23	21	44	16
TCAGATGTGTGTTTTT	alt_5445_missing	0	0	0	0	0	0	0	0	0	0
ATGGTATCGTAGTTCT	alt_5445_missing	46	50	34	44	41	24	53	34	46	24
GTTGTCATTCATGGCA	alt_5445_missing	0	0	0	0	0	0	0	0	0	0
GATCGTTAATGATGTC	alt_5445_missing	0	0	0	0	0	0	0	0	0	0
CATTGGATGAACGATA	alt_5445_missing	0	0	0	0	0	0	0	0	0	0
CCAACGGGGGCCGCTT	alt_5445_missing	22	33	40	42	28	37	37	29	35	34
AGAAATGGAGATAGCC	alt_5445_missing	28	28	34	33	38	31	36	33	35	28
AGAAATTGAATGATAG	ref_6100_new	5	15	9	10	12	9	16	4	8	6
CCAACACGCCGCGTAA	ref_6100_new	0	0	0	0	0	0	0	0	0	0
TTTTTTTTATCATTAG	ref_6100_new	25	24	17	19	30	22	25	22	34	22
CTTATCAAAGTTAAAT	ref_6100_new	11	12	14	13	11	15	11	9	7	5
CACCTGACTCCCTTAT	ref_6100_new	0	0	0	0	0	0	0	0	0	0
TAGATTTATACGTTTC	ref_6100_new	6	14	5	8	12	9	14	6	14	8
GTATCCTTTCCGTCGC	ref_6100_new	0	0	0	0	0	0	0	0	0	0
ACCGTAACAATAACCA	ref_6100_new	7	8	15	10	8	10	10	12	5	8
ATGGTTCGGTGGATCT	ref_6100_new	22	26	28	14	25	16	29	6	29	19
TGAAGTCGGTTTAAGC	ref_6100_new	0	0	0	0	0	0	0	0	0	0
TATCAATCCATAGGCG	ref_6100_new	2	2	1	5	3	3	4	4	5	2
AAGCCCGCAACGCCGC	ref_6100_new	6	23	17	6	8	10	21	8	6	16
ATCCGTTACTCCTGCT	ref_6100_new	3	1	1	0	11	0	1	3	3	3
GGTCCTATTTATTCCA	ref_6100_new	0	0	0	0	0	0	0	0	0	0
AACACTTTACATGTCG	ref_6100_new	0	0	0	0	0	0	0	0	0	0
TATGCACTTTATATAT	ref_6100_new	0	2	3	3	4	5	7	2	4	1
TGCGATCCCCGTGGAA	ref_6100_new	0	1	8	2	2	2	1	3	1	1
GGCTTTTTCCTTGTGT	ref_6100_new	11	7	12	9	10	9	14	2	13	13
CTTCGAAGTTAGCTCG	ref_6100_new	38	48	42	29	54	25	46	28	73	36
TTCATTCACGGTTGAG	ref_6100_new	0	0	0	0	0	0	0	0	0	0
GTCTAAAGAATGTACA	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CATTGTGGGAAATGCC	ref_6100_new	15	29	16	11	23	6	26	18	27	16
TTCTACAAACTGTGTA	ref_6100_new	0	0	0	0	0	0	0	0	0	0
TAGTGTCTAGCCTTAG	ref_6100_new	12	17	8	14	14	8	13	8	16	8
TCCAACTTTGGGCCGG	ref_6100_new	15	15	18	17	22	13	25	14	25	15
CAGAACAATCTCATTT	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CCTGGTGTGATACTCG	ref_6100_new	18	22	14	10	27	7	28	13	39	12
TTACTAGCACGTTCAT	ref_6100_new	2	5	2	4	1	0	3	0	3	1
GCCAGGTTGAGTGATG	ref_6100_new	1	3	3	0	2	4	2	0	4	1
GACGGGTATCATCACC	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CGTCCGGGTCTATCTT	ref_6100_new	0	0	0	0	0	0	0	0	0	0
GAACGCCAGTAATCGA	ref_6100_new	0	0	0	0	0	0	0	0	0	0
ACTACGAGGTTATATA	ref_6100_new	11	14	11	5	14	5	13	16	11	6
GCGGCTATGACGGTCC	ref_6100_new	0	0	0	0	0	0	0	0	0	0
TACTTAATCATTACCA	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CTCACAGTAGGGATGT	ref_6100_new	12	17	8	14	11	5	24	6	10	6
GGTCTACTTTTATAAA	ref_6100_new	6	3	2	1	3	3	10	4	7	3
ACCTGTATCGAAACCC	ref_6100_new	5	12	8	10	15	10	12	6	6	8
CTCCGGCCTTTGGAAT	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CTCGATGTGCGAAGTT	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CTAGGTTACAGATTCG	ref_6100_new	17	18	19	19	21	12	40	18	28	10
CGAATTTATACCTTGA	ref_6100_new	2	3	4	1	1	3	2	0	7	2
TATATTAGTCTGACAT	ref_6100_new	1	0	1	0	3	1	1	1	1	0
AGCCAGGTGCAAGGCA	ref_6100_new	0	0	0	0	0	0	0	0	0	0
TATCTGAATATTTCTC	ref_6100_new	7	10	7	13	2	2	6	2	6	1
GTGCTAATCGTCCCTG	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CCTTCTTCTCGACTGC	ref_6100_new	0	1	3	0	0	0	0	0	0	0
ATGTGATCACTATCCT	ref_6100_new	0	0	0	0	0	0	0	0	0	0
GCCGCTGGGATTCACT	ref_6100_new	7	19	21	9	17	17	34	13	20	13
CTATTGTCTTTGGCGT	ref_6100_new	0	0	0	0	0	0	0	0	0	0
AGATCTGTCATGGAGA	ref_6100_new	6	4	6	10	12	1	12	6	7	3
GACTTGCCCCACATAG	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CGGGAGACCAGTAGCC	ref_6100_new	0	0	0	0	0	0	0	0	0	0
GCCTATAAGGTACCAG	ref_6100_new	0	0	0	0	0	0	0	0	0	0
ACTAATGCCCCTTTGT	ref_6100_new	20	38	27	21	44	17	27	21	43	12
TGGAAAAATGGTACGG	ref_6100_new	0	2	1	1	1	1	3	1	0	1
GTGGTACATTAAGAGC	ref_6100_new	0	0	0	0	0	0	0	0	0	0
CACGTACAGGAGGCTT	ref_6100_new	5	4	4	2	8	11	7	4	7	7
CTATGAGTTATTCGGT	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
TAAGACCATCGGGCAC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
GGATCACGACCTGGTC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
ATCCATCTAGTTTGTG	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CGGGCCACGGTGCTTC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
TACTCTGGGCAGTTCC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
GTATTGCATGGTCTCC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CGGCATATCCCTAGAT	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CGATGTTGATGGCGAG	ref_3683_missing	10	4	6	11	9	3	11	4	3	6
CTCAAACCCGTTCACC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CTGACGATGCAGGTTG	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
GCGCCCCCACGGCTTT	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CATGGTATCTTAACTT	ref_3683_missing	6	6	1	3	7	2	7	1	8	5
CCTGTTCGTTGTCAGG	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
AGGGATTACAGGATCA	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
TTCTAAATCAATGTCC	ref_3683_missing	3	4	3	1	3	0	2	5	2	4
TCAGTACAACCCGTGT	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
ATGAGATTGGCGTTGG	ref_3683_missing	10	14	2	8	10	7	13	12	13	11
TCGCTCAGCCTCGTGT	ref_3683_missing	17	28	18	16	29	8	20	14	24	12
TTTGACAAAGAGCTTG	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CTTCGGCCAAGTAAGC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
TAGTATACTTGCTATC	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
TATACACGAATCGCCA	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
GCGACCTATACGAAGG	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CAGATTAACACGTTGT	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
GTTACAATGTTGTAAT	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
CTTACTTTAAAGGAAA	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
GTAAGATTATGGCCGA	ref_3683_missing	0	0	0	0	0	0	0	0	0	0
TCGGGTTGAACCGCCA	alt_5114_fdr	0	0	0	0	0	0	0	0	0	0
TAGGCAAGCACCTCCA	alt_5114_fdr	0	0	0	0	0	0	0	0	0	0
TAGCTTGGTACGTAGT	alt_5114_fdr	26	19	31	30	18	19	12	17	24	18
GCACGCATCCGCTAGG	alt_5114_fdr	64	59	62	73	48	50	66	73	75	60
GGAATGTCCTACTATC	alt_5114_fdr	8	4	13	11	5	10	7	9	12	10
GACTTGTTTCGCGTCG	alt_5114_fdr	156	117	172	167	115	187	123	141	124	161
GATCGTGGATTCACAT	alt_5114_fdr	0	0	0	0	0	0	0	0	0	0
CATTGATAGGTTCTTA	alt_5114_fdr	112	59	113	82	87	106	60	96	72	107
ACAACGCCGGCTAAAC	alt_5114_fdr	0	0	0	0	0	0	0	0	0	0
AGCCGGCCTCAACCTG	alt_5114_fdr	12	18	16	19	17	13	12	12	21	11
GGTTTGCTCGGATCCC	alt_5114_fdr	0	0	0	0	0	0	0	0	0	0
CTGCCCACTCTTTGTC	alt_5114_fdr	5	8	12	11	11	9	15	8	9	6
GTTCGCTACCAAATAG	alt_5114_fdr	117	72	132	108	74	92	77	91	93	78
TGTTTGCCGAGGGTCA	alt_5114_fdr	329	199	376	334	201	338	227	311	249	290
TCGTTATGCTTACCGG	alt_5114_fdr	198	127	184	202	153	146	146	159	139	134
TTCCATTTGCGCTCAT	alt_5114_fdr	127	84	148	161	119	102	101	103	114	100
ACCCGTCATCGTTGTC	alt_5114_fdr	63	43	69	86	47	53	37	71	65	54
GCCGAGTCAGCAATTG	alt_5114_fdr	0	0	0	0	0	0	0	0	0	0
TTTAAATTGCTCCCAT	alt_5114_fdr	2	2	9	6	3	9	8	7	5	1
CTCTTACACACACTCC	alt_5114_fdr	40	32	36	35	33	34	27	32	45	31
TGTTTTCCGCCCATAG	alt_5114_fdr	10	5	8	10	4	12	8	14	11	7
TGCAGATCATACTTGC	alt_5114_fdr	29	22	43	35	9	41	22	33	25	25
CGATCGGTCCCTTGGT	alt_5114_fdr	31	18	47	71	16	35	23	52	19	34
ATCTCGACTCTAATAT	alt_5114_fdr	99	69	120	104	68	82	80	89	63	77
TCTCGAGACGCCGGTC	alt_5114_fdr	64	25	68	66	27	39	24	52	22	57
TTATTGGCCTTATGAA	alt_5114_fdr	264	193	330	286	185	257	186	251	200	234
ACTCGCACTACTGCTG	alt_1159_missing	0	0	0	0	0	0	0	1	0	0
ATCTAATATTTAGCCG	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
TCCTTAGGCGAGGAAG	alt_1159_missing	15	23	18	13	22	11	31	16	18	5
GTCCTTGTGATCTCCC	alt_1159_missing	6	8	6	6	8	4	9	2	11	6
CGCCGACCATTTGATT	alt_1159_missing	2	1	5	2	4	4	6	1	2	4
CTAATAGTCACAATCT	alt_1159_missing	31	37	30	25	51	22	42	31	55	24
CATATTCGCTACTGGT	alt_1159_missing	31	64	49	39	63	28	73	31	58	30
CGTCTACGTCGTATAT	alt_1159_missing	4	10	7	3	9	3	14	7	4	6
CCGCGTGCTTTCGGTA	alt_1159_missing	4	8	4	6	6	5	9	7	3	2
GGTAGAGGTGTGTTTA	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
AATTGCTGGCTCTTTC	alt_1159_missing	2	2	3	1	3	2	7	3	4	1
GGGCCAGGATATCAAA	alt_1159_missing	14	30	18	16	34	21	26	18	28	16
CTCGCGTCTTCTTCAC	alt_1159_missing	0	2	4	1	3	4	3	0	5	1
TACTATGCTTGATTTG	alt_1159_missing	14	20	21	19	18	12	28	12	30	5
AGTACATTATCCCGGA	alt_1159_missing	35	117	36	30	118	30	126	32	110	30
TCTTGATAGATAATTG	alt_1159_missing	29	48	52	33	51	45	59	26	59	29
TGGTCTGAGGTAGTTT	alt_1159_missing	54	92	69	71	97	48	102	50	98	40
TATACGTACGCCATTC	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
TTGATGACTGTGCCGT	alt_1159_missing	7	20	12	10	11	9	35	9	21	6
TCAGCGGTGCGATGTC	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
CTCCATCAACGTGCAG	alt_1159_missing	2	7	2	2	5	3	6	1	10	0
TCTACGTAAGGCTAAA	alt_1159_missing	28	23	30	25	26	25	32	20	41	28
ATTTGTTGAAACGACT	alt_1159_missing	10	31	17	11	21	10	16	18	14	9
AAGAGGCGAAGGGATG	alt_1159_missing	2	4	4	2	4	1	2	4	2	1
ACTCCGGGTGCCTATA	alt_1159_missing	33	99	38	38	130	33	153	35	125	26
ATTCGTCATTTTGACT	alt_1159_missing	5	0	4	0	0	2	2	5	3	4
ACCTTCTCCTGCTTAA	alt_1159_missing	35	51	34	34	50	30	38	28	43	28
CACATATGGGTTAGTA	alt_1159_missing	14	23	22	18	33	11	23	12	27	16
GAGCATACACGGCGAT	alt_1159_missing	1	3	5	2	2	3	4	0	3	3
GAGTGTGAGCGGCCTA	alt_1159_missing	20	28	22	15	34	18	29	15	28	17
GGTATTCCAAGTAATT	alt_1159_missing	14	33	25	25	19	18	20	19	19	11
GAAAACGCTCTCCTCG	alt_1159_missing	34	40	27	22	29	27	35	25	36	15
ATGTTGCGCTAAAGTA	alt_1159_missing	21	15	23	22	25	18	35	23	31	22
ACCGACTTCTCATCCT	alt_1159_missing	8	8	3	5	12	3	7	5	12	8
CCTTCATGCCGTTTCC	alt_1159_missing	6	18	6	3	19	1	19	5	19	4
TCCATACTCACAACGT	alt_1159_missing	10	21	12	6	20	9	15	12	20	9
TAGAACTGAGATAAAT	alt_1159_missing	16	9	10	10	12	10	20	7	13	7
ACTGTGCTGCGTTAGG	alt_1159_missing	3	10	5	9	12	8	11	4	5	4
TACAACGTAGGTATCG	alt_1159_missing	3	5	4	4	9	2	0	0	6	3
TATGACCGTAAGCGCA	alt_1159_missing	4	6	6	4	3	6	6	5	6	9
GCGATGCAATACGCTC	alt_1159_missing	17	20	10	5	23	13	22	9	14	6
GGATCGCCTCCGTCTG	alt_1159_missing	31	48	47	31	58	48	58	33	57	29
ATGGCGGCCGATTTCC	alt_1159_missing	48	42	60	51	47	43	40	50	35	45
GACGTGGGCGTAAAAT	alt_1159_missing	31	44	31	24	41	31	41	13	42	35
AGTTCACAAATCGTAC	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
GTCCTACAGGCCCGAA	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
TAAATCCTATATTTTA	alt_1159_missing	2	1	3	0	1	0	1	2	2	2
CCATTCCAGAGAAAAT	alt_1159_missing	98	131	125	110	156	83	139	95	156	97
GCTGCTCTCGTTGGAG	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
ATGGAGCATATTTGCA	alt_1159_missing	11	13	6	7	13	13	13	7	11	9
CCCAATTTTTTCATCG	alt_1159_missing	4	17	6	3	18	15	30	5	15	16
TGCTAACGCTGTCAGG	alt_1159_missing	15	21	21	25	16	13	28	20	25	13
TACGAGCGGATGGGTG	alt_1159_missing	4	9	3	3	8	4	6	1	11	7
TGATCTTGCCACGGAA	alt_1159_missing	10	18	9	12	18	10	14	11	15	10
TGACGATCAACTACTG	alt_1159_missing	11	14	11	14	15	5	21	12	14	15
ATGGTATTGCGCCCAA	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
TTCGGTATCTTGATGT	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
TCACCTCCTGGCCAGC	alt_1159_missing	16	25	22	13	28	16	28	17	29	10
CCGACTCGAAGCCCTG	alt_1159_missing	13	21	18	11	28	19	28	14	26	17
GTGATCCCCTTTTTTT	alt_1159_missing	18	10	7	9	9	4	3	3	6	5
GAGCTCTGTGTACCGG	alt_1159_missing	7	19	6	5	12	7	15	4	17	6
CTAATTTATATTGGCT	alt_1159_missing	15	18	21	13	30	20	35	15	38	18
GGTCAGTTTCTCGGAA	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
CACATTTGGGTCTTCC	alt_1159_missing	4	13	9	5	9	1	16	3	9	4
AGCGGCGAGTCTATAA	alt_1159_missing	6	18	15	14	20	14	34	9	36	8
TTTACTTCCAATCCCT	alt_1159_missing	8	11	7	6	18	7	16	11	10	2
AATTTCCCACTGGTCT	alt_1159_missing	13	13	12	11	23	11	20	11	29	13
GTTACGTATGATCACT	alt_1159_missing	167	282	194	145	299	149	357	152	331	173
GAATCATAGTCGCAAG	alt_1159_missing	17	18	8	6	16	13	22	14	13	5
GCTAGAAATAGTCCGG	alt_1159_missing	29	59	31	32	57	24	58	25	58	24
ATTCGGGTTTCTTAGT	alt_1159_missing	16	23	17	15	29	19	18	14	30	15
AACGCTAATAACACCC	alt_1159_missing	10	20	16	17	38	15	16	13	29	18
GAAGTTATTTCTTTCC	alt_1159_missing	26	38	32	19	31	30	32	17	34	23
TTACTCGTTCACACAT	alt_1159_missing	22	48	22	19	57	22	35	14	45	26
GTAGCTAGTAGCTCGA	alt_1159_missing	7	2	5	2	3	8	5	7	12	4
TAATCATGCCCGTCGT	alt_1159_missing	17	10	12	8	13	16	12	13	21	16
GATGTTTATGACACTC	alt_1159_missing	13	31	19	10	21	14	22	4	20	11
TTTGCCGAAAAGATCG	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
TCCGGTAATACCGACC	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
AGTATTGTATAGTTCA	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
GTGCACAGCTATATGA	alt_1159_missing	10	23	7	11	11	10	20	8	13	10
TTTCTACTACTTCTCG	alt_1159_missing	3	4	1	2	3	11	4	0	5	5
CCCTCTACATGGGGTG	alt_1159_missing	24	44	27	27	49	17	50	20	58	25
TCGGAGTGTTTCTATC	alt_1159_missing	13	25	19	17	24	14	31	11	20	13
CCTAACAATTCCGGAT	alt_1159_missing	102	127	89	81	132	110	140	85	126	58
TTTCCATAGCATGCTC	alt_1159_missing	46	65	61	54	77	48	70	29	76	59
TTACTGTACATTGAAG	alt_1159_missing	29	33	17	19	54	17	28	36	36	13
TGCCGTATAGTTTCGA	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
AACAACGGTTCGTCTA	alt_1159_missing	5	8	6	7	9	8	9	4	7	7
ACCTTGGTCAATGGAA	alt_1159_missing	2	7	4	3	12	4	8	8	13	2
CTGTTAACCCCTGGCC	alt_1159_missing	2	12	4	11	12	5	8	10	16	4
TTGAGCGAAAGATTGC	alt_1159_missing	4	6	3	3	8	2	1	0	3	1
TTTTTTCTCCTGGCAC	alt_1159_missing	62	109	79	80	123	66	127	50	130	56
AATCACGTTTGGGGCC	alt_1159_missing	0	0	0	0	0	0	0	0	0	0
AATGTAATATAGAACA	alt_1159_missing	11	19	19	15	15	9	19	15	16	11
CGGCCCTCTTATTTGA	alt_1159_missing	27	35	46	30	48	32	39	32	42	16
GTGGCTACAGTTCTGC	ref_4177_missing	15	34	16	15	29	17	33	22	47	15
TAATCCGCAGAATCCA	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
GGACCACTGAGGGCGA	ref_4177_missing	2	10	5	1	4	5	5	6	10	5
CCCTGCCTTGAAGACT	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
AAGACTTTACCTTTCC	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
GTCCTGGGTGGCGTCC	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
CTGTTGGGTCTCTTCA	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
AAACTATACTTTAGCC	ref_4177_missing	25	29	17	13	41	19	35	20	52	14
GAGCGCCGGTTTTTTG	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
GTTTTTGAACGGCCCT	ref_4177_missing	16	29	9	13	27	10	41	13	27	8
CGGCCATGGTGTCCCT	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
CGGGTTCGGTTCATTA	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
CTTGGCAGATACACTG	ref_4177_missing	13	19	14	11	33	12	37	10	31	6
CTGAAAGGTGCTGCAT	ref_4177_missing	2	8	2	1	5	1	1	1	6	2
TCAGCCCAATCAGTCA	ref_4177_missing	0	8	0	2	5	3	8	0	3	0
AGCTATTCAATGCCGT	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
AGTTTGCCGCGTCTTG	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
AATTAAGTGCCGTTAG	ref_4177_missing	30	72	33	25	67	26	61	27	78	33
TCCAACCTTCACATAC	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
GCTTCTACCCCATGAT	ref_4177_missing	4	9	7	3	18	5	26	7	17	5
CGTGTGTTTTGCCAAG	ref_4177_missing	11	29	8	15	22	9	29	9	30	11
GCTGTTGCTTCTTGAG	ref_4177_missing	43	86	44	41	93	37	73	24	105	53
AGTCCCTGCGTGACGA	ref_4177_missing	1	0	3	4	7	1	1	0	5	1
TACGAGAGTGCGACGG	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
ATTTGACAGTGCCCCC	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
CCTAGTAGAAACCTCG	ref_4177_missing	13	23	9	14	25	14	27	12	33	6
GGTTCCATCGACCATC	ref_4177_missing	14	13	11	15	18	9	9	12	15	7
AGAGAAGATTTCGCCG	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
TAGGTTGGTCGTCATT	ref_4177_missing	4	13	1	4	11	3	10	3	13	6
ACGTGCCCCCGTTTGG	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
TTGACGTTTTATTATA	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
CTCGGTGAAGTTTCGT	ref_4177_missing	5	8	6	5	21	5	4	7	12	4
GGAGTACGTTTACTTC	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
ATCTTGTGGCTTGTAG	ref_4177_missing	0	0	0	0	0	0	0	0	0	0
GTGTTCGATAAGGAAG	alt_3246_missing	68	74	102	70	66	93	78	65	75	62
CCGCGACTGCACTTTT	alt_3246_missing	99	93	146	133	108	101	116	88	101	105
GGCGTAGGTTCATTTT	alt_3246_missing	109	100	154	148	103	126	91	117	101	101
TGCTGAATAAGATTAT	alt_3246_missing	0	0	0	0	0	0	0	0	0	0
TCCTGATGCTAACTAC	alt_3246_missing	10	6	21	4	13	10	6	9	9	10
TCACTTTGTCTTAAGA	alt_3246_missing	0	0	0	0	0	0	0	0	0	0
TGTCTCTATAGGACCG	alt_3246_missing	47	46	55	48	27	40	49	36	40	38
TGTTCCGGTGTGTGTG	alt_3246_missing	75	42	75	68	51	77	64	81	58	57
TCTCTTTGTCTTAAGA	alt_3246_missing	133	118	182	169	141	117	124	136	140	133
GTATCTCGTTAACCTT	alt_3246_missing	45	24	45	43	42	33	36	41	41	28
TCTCTTTGTCTTAAGT	alt_3246_missing	0	0	0	0	0	0	0	0	0	0
ACAAGGTCCGAATCTG	alt_1097_missing	81	54	82	91	53	59	47	51	57	78
TTCTGCAAAGGCCCGG	alt_1097_missing	115	68	149	96	72	100	61	101	43	115
CTAGATTAAATATTAT	alt_1097_missing	21	9	15	16	9	10	10	16	16	6
AACGTGGTCTAAACCG	alt_1097_missing	87	75	138	100	86	109	79	112	84	105
GCCCTCTAGTCTCAAA	alt_1097_missing	16	12	20	22	15	16	11	7	12	12
AGGTACATTTAGCGTA	alt_1097_missing	43	31	54	46	22	50	39	46	32	47
GCCTCGCCTCTGGGCG	alt_1097_missing	0	0	0	0	0	0	0	0	0	0
GCTCGACACCCAGCAG	alt_1097_missing	52	49	46	35	40	34	43	31	65	40
CGTCCGTACTCACGTT	ref_1687_upstream	53	97	53	39	101	48	100	41	107	43
GCCCAAGGAGGGGTCA	ref_1687_upstream	0	0	0	0	0	0	0	0	0	0
TCGGATGCTGGGCTTC	ref_1687_upstream	22	39	30	27	25	25	27	22	32	20
GACTTTTCCAGCGTCG	ref_1687_upstream	46	79	68	56	71	57	75	41	59	31
CAAGTGTCTATTTGGT	ref_1687_upstream	0	0	0	0	0	0	0	0	0	0
TGCTTTGGTACAGGAT	ref_1687_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCACCAATGATGG	ref_1687_upstream	45	50	47	43	52	39	47	42	54	53
TGAAGGGTTTCTTGCT	ref_1687_upstream	0	0	0	0	0	0	0	0	0	0
TCTCCGCGCGTTGAAT	ref_1687_upstream	3	10	6	0	4	4	5	0	4	3
TGCGCGCATGATTTTA	ref_1687_upstream	219	360	285	258	357	211	378	205	416	221
CCTAACGGGTCATGCT	ref_1687_upstream	26	41	28	23	48	31	43	22	43	31
AAGACCTGCATACTTG	ref_1687_upstream	14	21	16	15	17	20	22	19	24	9
AATAGTACCGACCGTG	ref_1687_upstream	0	0	0	0	0	0	0	0	0	0
GAGGATACGCGCAAAT	ref_1687_upstream	0	0	0	0	0	0	0	0	0	0
TTATATATCATTGATT	ref_1687_upstream	0	1	1	1	0	1	1	5	1	1
CAGGGGTATCAAGTTA	ref_1687_upstream	9	26	11	11	9	6	20	8	13	11
TCTACTTTCTGCTTTA	ref_1687_upstream	6	17	6	7	11	3	14	14	6	6
ATGCTATAGCGATGAT	alt_2169_fdr	24	15	26	19	14	28	21	12	21	15
TTCTGGGAGCATCTAA	alt_2169_fdr	110	125	109	103	100	93	125	108	143	80
GATTGTGGGCCAAGTC	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
CTGCGTGTGCGTAAAG	alt_2169_fdr	6	8	6	3	3	7	6	7	4	5
AGCTGTAGCTCTTGAC	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
TGCTTATCATCTCTAA	alt_2169_fdr	149	115	192	153	126	153	126	139	134	117
TTTGGCCCGTTAAAAG	alt_2169_fdr	26	39	49	61	43	50	46	39	37	54
GCCTGTGGAGATTATG	alt_2169_fdr	105	83	96	109	108	102	99	88	117	73
CGTGCGAGCTCGTGCC	alt_2169_fdr	17	14	22	24	11	8	18	20	21	13
TAGGAGCTTAAGACTT	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
GTAATCCTCGTCCCTC	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
ACCAGTACGTTCATAC	alt_2169_fdr	3	6	4	7	5	1	6	3	11	4
TACCATGACACTCTTG	alt_2169_fdr	35	40	32	37	48	32	48	42	42	34
TTCGTCCATTACGTTG	alt_2169_fdr	4	1	7	1	4	2	3	1	7	2
ACACCCCGGTAACCTC	alt_2169_fdr	84	56	102	86	60	98	50	106	86	89
CTCGTGTTACGGCTTG	alt_2169_fdr	6	6	11	9	13	10	6	8	10	4
CCAATCTGCAATTTCT	alt_2169_fdr	31	12	31	17	13	17	19	23	23	17
CGGCAGCCTGAACTTC	alt_2169_fdr	128	135	208	158	149	143	167	142	138	111
CCGTAGGCCTTTATGT	alt_2169_fdr	9	35	20	12	37	14	46	13	48	9
CCGGTAATGTGATGTA	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
AAATCTCCGTGTCCCA	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
GGCCGGGCCAAGTTTG	alt_2169_fdr	58	53	65	59	60	62	68	42	66	64
GGACGAGCCTAGTAAC	alt_2169_fdr	21	14	18	22	15	16	21	14	15	24
CTAGCTATTGATTTCC	alt_2169_fdr	18	28	23	29	26	25	26	23	29	18
ATTAAGGGTTTGAATT	alt_2169_fdr	13	14	24	20	15	14	17	18	12	13
TGATGCCACTCCGATT	alt_2169_fdr	98	92	105	120	63	69	104	86	110	62
GGATATATCGGTAATA	alt_2169_fdr	73	59	71	78	57	67	61	58	50	47
ACGATGTTATCTATCT	alt_2169_fdr	53	45	75	75	43	42	40	50	39	42
CTGCATCTTGGATAGA	alt_2169_fdr	127	110	164	142	111	136	119	125	117	103
CACATTCATCACTCCC	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
AACTGAGGGTGTATGG	alt_2169_fdr	7	8	17	8	5	11	11	10	10	7
TTTTCACCGCGGGTTC	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
TGGTATGGTACACTAA	alt_2169_fdr	61	49	74	77	58	63	59	72	70	62
TCGCCTTTCGGTCCAC	alt_2169_fdr	94	88	94	84	78	81	87	91	97	86
CGCTCTCCGGCCTCGA	alt_2169_fdr	8	6	5	6	8	5	5	4	6	10
GCCGCATGTTCCCCTT	alt_2169_fdr	43	41	79	57	47	51	68	61	64	59
GGGACCACTGCTGGGT	alt_2169_fdr	4	3	3	3	3	2	2	4	8	3
GGTCTATTCATCGTTA	alt_2169_fdr	20	16	26	16	18	18	31	32	33	22
CGTTCCAAGCATTTAT	alt_2169_fdr	44	43	60	59	36	54	48	59	49	68
TGAGGTGTCATAGTTA	alt_2169_fdr	90	51	97	74	92	73	52	58	78	79
ACCACGTTCGCCGCGT	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
CCATTGTTACCTAGTC	alt_2169_fdr	24	14	26	21	12	16	21	19	21	15
TCAGGCAGCAGAATTG	alt_2169_fdr	10	9	17	8	12	13	13	8	11	11
AGCGTCCACCCGGTGG	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
GATCGTGTCCTTGGGG	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
ACCTTCTCGCGGTTCT	alt_2169_fdr	104	111	99	93	119	91	109	89	126	87
TTATTAACGACTATAA	alt_2169_fdr	9	17	17	17	8	23	21	13	14	18
TTCCCATTGAATAGTC	alt_2169_fdr	0	0	0	0	0	0	0	0	0	0
GGTTTCAGATAATCCT	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
AGCCTGCCTGCGTATC	alt_2171_fdr	45	13	61	54	16	41	23	52	20	41
GCCCACGTAGACGGGC	alt_2171_fdr	306	87	394	402	80	305	93	295	89	295
CTTGCGTATTACACTG	alt_2171_fdr	17	1	19	15	1	5	5	11	7	8
TCGTTACCATTCCTGG	alt_2171_fdr	844	277	1033	986	268	868	235	858	297	736
ACGGAAGTATTTATCC	alt_2171_fdr	290	76	322	257	64	222	90	276	92	236
GAGTGTGCTTAAATCC	alt_2171_fdr	4	2	2	4	4	9	2	8	4	7
GGGGCTTTCTAGTTAT	alt_2171_fdr	86	33	122	92	35	90	25	67	46	73
CCAAGGTGAGGTTCCG	alt_2171_fdr	129	33	119	159	41	117	46	108	41	111
ATTTTCTAATACCTTT	alt_2171_fdr	27	2	22	31	4	34	8	26	13	18
CACTCCTATTACCTCC	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
TATTACTCTCATTAGG	alt_2171_fdr	417	105	527	458	101	390	117	411	156	344
TGTCTTTTATATCCTA	alt_2171_fdr	110	33	188	141	48	116	52	133	54	128
CGTCGTTTGATGGGGT	alt_2171_fdr	47	20	65	47	11	37	18	51	10	41
CTATGCCCCAACGGTT	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
ATCAATGGAAAGTCTT	alt_2171_fdr	48	15	43	42	9	24	7	37	21	31
CAACCAGTGGCTTCAT	alt_2171_fdr	210	95	250	246	78	218	97	229	105	183
GAAAAGATCGGATATT	alt_2171_fdr	37	7	44	28	13	39	8	38	10	31
TGGTAGGTAATGGAAG	alt_2171_fdr	435	146	586	467	176	438	174	391	197	430
ACTACTTCTATGGAAT	alt_2171_fdr	19	6	9	16	4	10	6	12	4	7
TCTCTATCCAGCGCGG	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
CCTACTCGTCGAGCAT	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
GGTTCGCCGTGACCAT	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
TTTAATTTCAATGTGT	alt_2171_fdr	0	0	0	0	0	0	0	0	0	0
CTTCTCTGTACGTGTA	alt_2171_fdr	93	33	115	118	37	96	26	96	28	94
CGAGGTCGTGATTGCC	alt_2171_fdr	0	11	5	3	15	5	9	6	12	4
ATGTTTTGTCCAGGAT	alt_2171_fdr	1074	332	1316	1155	343	1093	344	1085	379	951
GTCCGAGTATTTGACA	alt_2171_fdr	134	57	158	139	63	151	66	131	60	102
ATGACTTTCAGCGTTT	alt_2171_fdr	105	44	129	118	30	116	35	107	31	97
TAAGCCGTGTAATCGT	alt_2171_fdr	94	26	107	127	36	90	35	96	29	98
ATAACGTCCGTTTTAG	alt_2171_fdr	234	85	263	256	63	230	69	218	56	203
AATAACAATTCAATAA	alt_5982_new	0	3	2	2	0	2	7	0	3	0
CGATCTATTTGCTAAG	alt_5982_new	0	0	0	0	0	0	0	0	0	0
GCTCTAAAGTCTCTAG	alt_5982_new	0	0	0	0	0	0	0	0	0	0
TTTGACACTTTACGCT	alt_5982_new	13	52	32	20	55	21	47	12	43	26
AGACATTTATCTCTTG	alt_5982_new	17	36	19	14	32	15	42	25	48	12
CCAAACTGGTCGAGAG	alt_5982_new	0	0	0	0	0	0	0	0	0	0
TGATATTTCTTCGACT	alt_5982_new	0	0	0	0	0	0	0	0	0	0
AGTCATCGACACGGTA	alt_5982_new	15	41	31	19	50	24	58	11	46	21
GTTGGAAAAGCTTTCT	alt_5982_new	0	0	0	0	0	0	0	0	0	0
TGTTGTTCATTTTCGC	alt_5982_new	22	34	25	19	36	12	39	12	34	22
TAGCGCATACATGGAG	alt_5982_new	15	23	14	13	24	15	22	7	33	14
AGAGGTCTCCACGTTG	alt_5982_new	0	0	0	0	0	0	0	0	0	0
GCGACAGGACTTTGTC	alt_5982_new	0	0	0	0	0	0	0	0	0	0
CGCGCCTGAGCTCTGA	alt_5982_new	0	0	0	0	0	0	0	0	0	0
TGTGCAGCTCCCCGCC	alt_5982_new	0	0	0	0	0	0	0	0	0	0
ATTCACGTCCTAAATC	alt_5982_new	6	5	2	2	4	2	11	4	7	5
AGATCGTGATAATTGC	ref_538_missing	1	1	0	2	3	2	2	2	4	2
TGGGCATTAAAAGTTC	ref_538_missing	0	0	0	0	0	0	0	0	0	0
GCCATCTGTCACGTTC	ref_538_missing	0	0	0	0	0	0	0	0	0	0
ACGCCTAGAGCCGTGC	ref_538_missing	0	0	0	0	0	0	0	0	0	0
GTGTTGTCCGCATTTT	ref_538_missing	0	0	0	0	0	0	0	0	0	0
AGCAATTTCTCTATTA	ref_538_missing	0	0	0	0	0	0	0	0	0	0
TGGTCTAGGCATGTCA	ref_538_missing	0	0	0	0	0	0	0	0	0	0
TTCATTGTCCGGTTCA	ref_538_missing	0	0	0	0	0	0	0	0	0	0
TTTGTGGCCGGTTGGG	ref_538_missing	0	0	0	0	0	0	0	0	0	0
ATTATTGAGTACTCTA	ref_5187_missing	341	347	392	384	330	334	357	354	317	285
GTGGCGTTTATAGGAC	ref_5187_missing	0	0	0	0	0	0	0	0	0	0
TTGGTACTGGCCGTGA	ref_5187_missing	15	11	28	20	19	18	14	15	12	19
ATGGTTCATTTAATTG	ref_5187_missing	25	26	42	38	39	24	21	31	30	35
AGGTGGACTATCATAG	ref_5187_missing	207	197	244	224	198	222	164	213	178	206
CATTTCGATAGGCGCT	ref_5187_missing	37	20	45	41	30	21	27	35	37	35
TATGCCCGGCGGATAT	ref_5187_missing	187	154	258	223	164	208	157	161	145	173
AGGTCGTGCGTGCATG	ref_5187_missing	30	20	21	21	19	23	20	15	17	15
AGCTCTGCGTCTGCTC	ref_5187_missing	56	66	93	81	69	56	88	56	69	66
GTACGGTTTGTTTTTG	ref_5187_missing	2	0	2	1	0	0	1	0	2	1
CTGAGGGGCGACGGTA	ref_5187_missing	15	6	22	21	12	19	9	6	4	21
GTAACTCTATCGCGAA	ref_5187_missing	20	18	36	33	21	32	29	29	31	15
TTTAAGGAATTACACG	ref_5187_missing	22	21	21	20	19	17	29	10	16	20
AAAAATTCTCTAACGT	ref_5187_missing	158	120	225	200	146	170	146	151	110	133
TGAAAATCTTACGGTG	ref_5187_missing	102	69	113	106	73	87	83	85	76	81
GGAGTTCGCTTAGTTA	ref_5187_missing	34	27	29	32	32	34	33	42	27	30
GTGTCAGGCTACGCTA	ref_5187_missing	95	81	88	90	90	93	89	76	78	82
CTTAGTCATTCAGTAT	ref_5187_missing	35	31	52	32	40	32	34	37	30	26
ACATCGGGCTGTCTGC	ref_5187_missing	243	320	288	248	349	236	307	227	352	224
TTCGCAACTGCGTACA	ref_5187_missing	0	0	0	0	0	0	0	0	0	0
GCACTAGGCAAAATCC	ref_5187_missing	22	7	13	15	10	8	9	18	16	11
TACAGAATACTTCCGT	ref_5187_missing	25	37	49	33	31	38	31	38	32	31
CTCTTGTCTATCTATC	ref_5187_missing	0	0	0	0	0	0	0	0	0	0
CTGACGTACAGAATTC	ref_5187_missing	0	0	0	0	0	0	0	0	0	0
ATCGATTCGCGAATCA	ref_5187_missing	86	72	88	64	63	67	62	83	71	81
GTTTGATAGAACCCAA	ref_5187_missing	34	18	40	16	24	33	34	21	38	21
TGTTCAAAGGCGTATT	ref_5187_missing	93	77	130	110	85	96	88	93	92	92
TTTGATCCACCTGGAC	ref_5187_missing	35	34	29	28	20	35	23	31	29	23
ACAGCCCTGGCGCTGA	alt_565_reverse	43	33	45	38	45	34	44	27	39	23
CGTTGACTTCATTTTC	alt_565_reverse	1	1	1	0	0	1	2	1	1	1
TCGCTCTGTTTTTATT	alt_565_reverse	38	36	44	36	48	33	31	41	42	37
AGTTTTATCTTCGTTC	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
TTTTTACACCCATTGA	alt_565_reverse	20	26	34	20	31	21	34	29	39	26
ATGTCGGTTAGAGGCT	alt_565_reverse	25	34	28	24	21	33	30	24	30	20
TCGCTCGACTAGATAC	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
CGTCCGCAGATCGTGT	alt_565_reverse	84	87	97	70	122	67	83	66	95	86
GCTGCTACACGCTCAA	alt_565_reverse	23	21	17	11	15	10	24	25	29	16
CTACTGATCATTATGA	alt_565_reverse	10	15	11	18	12	12	23	13	14	15
GCAAGACAATGGATGG	alt_565_reverse	31	22	35	27	36	41	35	33	32	35
GCTGTTTGCATGGCAC	alt_565_reverse	19	24	20	20	14	13	19	6	19	13
CAGCCTGCCGACGCAA	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
ATTGTACATTATCATG	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
AATTTCTGAATCCGTA	alt_565_reverse	23	9	9	25	17	19	24	10	16	14
TCCGGTACACGCACCT	alt_565_reverse	9	17	19	6	24	17	24	14	25	14
ACTTGTGCTCCGTCTT	alt_565_reverse	15	24	24	29	17	22	34	17	30	19
ATGGGTGAACCCTACG	alt_565_reverse	13	23	15	11	20	12	11	11	16	5
TTAATTTGTGAGGTGC	alt_565_reverse	44	60	59	45	61	48	48	57	55	42
TATCGGCTGACTGCGT	alt_565_reverse	8	11	9	12	14	7	13	6	11	7
GGGTTTCCACATTCGC	alt_565_reverse	4	7	12	2	11	4	6	4	9	7
TGTTTGTTTGCCGGCG	alt_565_reverse	23	31	23	34	28	14	27	24	32	23
CTCTGAGCGCCCAAGG	alt_565_reverse	0	1	2	1	7	2	3	3	6	3
ACTCGTATGGTCCTCA	alt_565_reverse	41	88	61	51	89	34	128	44	123	43
GTTTGGGCTCTGGTCT	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
GAGTATCGCGAGTTCC	alt_565_reverse	34	39	42	29	50	37	45	31	57	38
TTTATCCTCTCCATTG	alt_565_reverse	13	15	8	7	13	16	10	16	16	7
ATCTCGGCCCTATTCG	alt_565_reverse	13	16	24	14	21	11	20	13	20	8
TCTACCGGTCTTTTTC	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
AGTCATTATCGTGTCT	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
TAGCTCTTACCTCGTG	alt_565_reverse	0	0	0	0	0	0	0	0	0	0
CAGGGCCACGGTTTTT	alt_565_reverse	9	14	7	7	13	3	8	8	7	9
CCCTTATTTATTATAG	alt_1363_RC	22	44	20	19	26	24	33	18	32	17
GATCGACCGAGGCGCC	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
GCGATCTCCCTGCCGG	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
ATCTTCTTCCCTAACC	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
TAACTGCTGATGGTGC	alt_1363_RC	31	24	36	23	27	30	25	26	16	20
TTCAGCCAATTATGGG	alt_1363_RC	53	45	35	53	55	38	47	51	62	39
GCACGTTTGTCTGTAC	alt_1363_RC	11	19	26	20	16	17	20	21	16	11
TTTTGCCATTCCACGC	alt_1363_RC	2	5	7	0	0	2	1	0	1	5
CAACGTTGGTCGTGAG	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
ATCAGCATGATAGTTA	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
CGCTTGCGCTTTTCTA	alt_1363_RC	24	25	18	26	17	13	32	22	19	19
GATGTGATTGATTCAC	alt_1363_RC	75	72	67	76	67	58	82	81	72	66
GGCCCTCGAGTGGGCT	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
TGAGCTGGTTTCCATT	alt_1363_RC	37	24	46	60	36	39	31	34	34	34
TCGCCCGACCGCTCGG	alt_1363_RC	9	6	9	13	8	7	8	6	13	5
TAACTTCTGTTTGCTC	alt_1363_RC	28	28	45	39	32	30	23	30	19	28
CCAATTAAATCGTAGT	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
CATTATTGGTTTTACT	alt_1363_RC	48	50	45	59	38	49	43	46	59	47
TGAATGACTTTGCCTG	alt_1363_RC	1	2	4	1	0	5	4	3	0	1
GAAATCTAGAACAGTT	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
GAGCAATGAATATTGG	alt_1363_RC	24	45	51	17	43	14	31	32	38	27
AAACGGGTCAGCGTTT	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
TAGCGGCGGACCTAAT	alt_1363_RC	12	7	10	10	3	8	7	7	5	7
GTAGATTCCAACGTTG	alt_1363_RC	36	46	65	44	27	38	41	45	50	45
TTCCTGATGGGCACCT	alt_1363_RC	61	57	73	61	43	54	49	72	58	50
TTGTCGTGTTGTGTGA	alt_1363_RC	18	26	17	12	35	18	19	19	28	21
ATTGGACGAGGTGACA	alt_1363_RC	0	0	1	1	0	0	0	0	3	1
GTGAGATAGTATGTTG	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
GAAGTTATTTTCGGCG	alt_1363_RC	18	24	38	22	23	30	21	26	23	24
CTTTATGCATATCTCG	alt_1363_RC	59	36	51	49	36	47	56	45	47	39
CTAACATCTTGGATCG	alt_1363_RC	85	68	96	94	84	104	77	84	90	60
GTCACGACGCAAGCAA	alt_1363_RC	32	43	65	57	45	44	41	41	25	43
CCTTTAAAGAGACTGG	alt_1363_RC	0	0	1	1	1	0	0	0	0	0
CCCCTTTGCCCGTAGG	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
GTGTTCGCACTTTTTA	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
GTCTGTATTAATGCAA	alt_1363_RC	0	0	0	0	0	0	0	0	0	0
CTCCTCGTGCAACTCT	ref_3682_missing	13	75	16	18	84	15	88	16	66	19
ATTGTAGTAAAGGGCA	ref_3682_missing	21	32	37	29	33	17	39	21	36	15
ACAAATGTAAGGGTAT	ref_3682_missing	0	0	0	0	0	0	0	0	0	0
CCTCGTTTAGTACGAC	ref_3682_missing	31	106	32	41	127	39	118	29	139	32
GGGCTCCACATTGCCC	ref_3682_missing	17	23	30	20	28	18	30	21	31	23
AACAAAGACGTGCCAA	ref_3682_missing	10	19	20	18	21	14	14	14	20	11
TGTTCGAGATTTTAAG	ref_3682_missing	4	1	0	1	0	6	1	2	4	4
TCCCCATATTTGTTGC	ref_3682_missing	101	138	107	107	125	106	133	92	129	68
CCCACGCTACGGTGCG	ref_3682_missing	19	48	16	16	41	25	45	21	61	15
TCTGCTGCCCGGGTAT	ref_3682_missing	21	25	17	30	37	12	27	30	32	21
ATGTTGACTCCGAAGC	ref_3682_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGAATACGGACG	ref_3682_missing	4	6	2	1	3	3	7	3	3	6
TCCACGGGTGTAAACT	ref_3682_missing	12	24	20	13	35	16	28	7	40	14
TAATCTGCTGCGTAAG	ref_3682_missing	6	9	11	7	11	11	15	10	20	9
AGATTGACCATCGATA	alt_5166_missing	29	65	40	37	44	38	45	31	54	43
CCGATGTGCTGGACGT	alt_5166_missing	19	28	29	16	24	25	32	24	42	15
AGAATCACCGTTATGG	alt_5166_missing	17	28	26	23	37	24	27	23	37	27
CAATCGAATTGTTCTT	alt_5166_missing	58	63	59	60	76	71	96	54	96	67
ATCCTGTGTGGATAAA	alt_5166_missing	8	20	8	7	16	5	15	6	15	4
TCTGGTAGTATTAGTA	alt_5166_missing	0	0	0	0	0	0	0	0	0	0
TATCAACGCCTGGCTA	alt_5166_missing	0	0	0	0	0	0	0	0	0	0
CGGTTTCGGCACCGCC	alt_5166_missing	0	0	0	0	0	0	0	0	0	0
GTGATACAATGGACTC	alt_5166_missing	0	0	0	0	0	0	0	0	0	0
GACGGTATAGAGGCTT	alt_5166_missing	40	57	44	39	48	36	39	40	54	34
GCAGCATGTAGGTTTT	alt_5166_missing	18	30	29	25	26	17	28	22	31	27
TGGCAGTTCCGGACGT	alt_5166_missing	10	4	8	12	4	12	10	9	15	7
TGGCTTTATTCATACA	alt_5166_missing	38	92	60	57	78	52	96	48	69	43
GACCGTGATGTGTGGG	alt_5166_missing	0	0	0	0	0	0	0	0	0	0
AGATACCAGTGACTGC	alt_5166_missing	3	5	6	0	2	1	2	0	3	2
GCGGGTCAACCAAAAG	alt_5166_missing	0	0	0	0	0	0	0	0	0	0
TTAGTTGGTCGTGCAG	alt_2728_missing	58	95	83	62	97	52	92	56	90	75
TCAAGCTCCTCTGATA	alt_2728_missing	18	44	21	15	26	21	29	24	20	22
TTTCGTGTTTGCAGCG	alt_2728_missing	6	14	11	9	4	5	7	1	9	3
ACTGAATTTTTTCCTG	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TGCTCCGCAAGGGCTC	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
AAAGTATCATATGAGG	alt_2728_missing	9	6	6	12	3	1	6	6	7	6
CATTTCTAAATTACTT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TAGTGTAGTCTTGTGC	alt_2728_missing	1	3	4	0	3	2	4	2	4	6
TTCCTGGGTGCACGGT	alt_2728_missing	8	12	5	3	11	5	19	14	9	7
ACATGTACTTATTTTA	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
CACGTGATACGTAAAT	alt_2728_missing	0	6	1	3	1	0	3	3	4	0
AGTGTGTGTAGATCAA	alt_2728_missing	69	97	86	65	98	61	107	74	107	61
TAGGGAATTTATTCTA	alt_2728_missing	18	22	26	20	33	16	17	19	24	17
TTTCCAGCTGGGGTCG	alt_2728_missing	16	21	23	18	21	14	23	17	28	14
GATTCGTAGAGTACAC	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
GGTGGCGTTTCATCTT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
CTACCTATTTACCGTC	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
ACTGATTGTTAAGCAC	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TCAGCTTTGGAATCGG	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
GGACACAGTCAGCTGA	alt_2728_missing	10	8	8	7	6	8	5	5	12	8
GCCATTTCTCCTCCGT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
CCGTGCGAGACACTTA	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
GGAGGCACGTAGGTTA	alt_2728_missing	6	10	11	5	14	4	5	6	7	10
CAATACCTATCGCCCT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
ATATAGAACGCTATCT	alt_2728_missing	36	44	54	39	48	37	48	36	48	38
TCTTGCGCGTGCGGGT	alt_2728_missing	17	9	19	8	14	7	19	6	15	8
TTGTATCTCCTTGCCA	alt_2728_missing	15	22	22	19	20	8	20	16	11	12
GGCACGTACCCAGTAC	alt_2728_missing	11	9	12	11	6	9	10	16	8	5
GTACGGTTGGGGCTAA	alt_2728_missing	3	5	2	2	1	7	4	2	10	7
ACTTTTGTGTGTTATC	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TATGCCGACGGTCGGG	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TTATCGTCTCTTCACC	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
GCTTGGGGAGATTATT	alt_2728_missing	9	13	12	10	13	4	18	7	14	10
TGTCTTGTCTTCGTTG	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
CCGTGTGCGGAATGTT	alt_2728_missing	0	3	2	4	6	5	5	5	9	2
CTGGACGGTTTGCCAA	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TGTCGACTTTCCTGCT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
ACGCAGCGCTTATTAG	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
AGGGATGTCAATCCTT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
GGGTCAGCTTTGCTCT	alt_2728_missing	6	7	15	19	16	10	18	11	21	11
TAAAACTCTGGCTGCG	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TCGAATAAGTTTGGAA	alt_2728_missing	41	44	31	36	38	48	55	18	53	41
AAGACCTGCTCTGAGT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
GCATTAAAGTTATTTG	alt_2728_missing	6	10	10	10	7	7	13	6	10	3
GGGATTCCAGTTATTC	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
GAATCCTTGCGCGGCC	alt_2728_missing	3	10	8	10	11	11	6	10	11	17
CCTAAATGTGCTATGT	alt_2728_missing	41	43	50	42	69	36	80	39	57	41
TAACTACGCCTTAGTT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TCCTTATCCCGTTCAT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
AACGAACGGTTCTCAA	alt_2728_missing	1	3	2	5	6	2	5	2	4	2
ACGCATTACAAGTACT	alt_2728_missing	0	0	0	0	0	0	0	0	0	0
TTCGCGCGGCGTGGGA	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
GCCTTCACTCCCCTTT	ref_4802_missing	2	16	0	4	11	1	21	0	14	0
TGTCGATTCAATCTAG	ref_4802_missing	0	1	0	1	2	0	3	2	1	1
CCCGAATGAGGGTGTA	ref_4802_missing	31	54	38	35	63	33	65	34	72	16
GGACGGAATAATGCTG	ref_4802_missing	15	25	18	12	34	8	35	15	27	5
TCTACTATTCTCGGTA	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
AGGTGACACAATAAAT	ref_4802_missing	13	19	15	12	10	9	8	11	10	4
TTTCCACGATTGTGTC	ref_4802_missing	10	26	3	16	27	4	23	8	16	13
CACGTACGCCGTTTGC	ref_4802_missing	0	1	0	0	3	2	1	1	1	0
TAGAATTGTCGTTGCC	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
TTCGTGATTCCTGGTG	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
CAAAGCGACCCCAGAA	ref_4802_missing	2	12	1	5	6	2	10	3	6	3
GTCCGCGTTCGACTTA	ref_4802_missing	5	17	3	3	18	3	14	1	15	6
ACCCATTTGTTGCTGA	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
TTTACCGAGGCGGTGT	ref_4802_missing	4	14	11	8	17	6	21	2	8	4
TTGAGCTTACTAGCAG	ref_4802_missing	2	5	2	1	4	1	4	1	6	3
TGCGATTGACTGCGTG	ref_4802_missing	11	42	12	13	72	18	54	12	40	24
CAGTACTGATTCTTGT	ref_4802_missing	5	9	10	2	17	0	13	2	10	0
GTGCGGGTCAAACATG	ref_4802_missing	7	12	9	9	14	5	28	10	18	7
CACTCTCCGAACTTTC	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
GCATACTCCCTTCTTT	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
AATTTACTTTGGGGGC	ref_4802_missing	5	5	6	4	8	1	8	5	8	4
TCGCTGTACGTACTTT	ref_4802_missing	13	34	17	7	24	15	22	7	23	13
TAAACCCCTAGGCTGC	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
TAGGAGTTTAGTCAAA	ref_4802_missing	17	25	15	10	36	22	30	14	22	13
CGTTAGAAGTCAGAGA	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTACTTTCGGGA	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
TAATATGGTGAATTGG	ref_4802_missing	3	7	4	1	3	5	6	0	6	4
TTTGACGGAGGGGAAT	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
CTTATATGCGCAGCGT	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
AATTAAAGGAAGTGGC	ref_4802_missing	31	47	31	14	40	32	34	24	30	22
ATTGTTTGTTAGTCAA	ref_4802_missing	1	4	1	5	4	2	3	1	8	1
ATGTTGTAGCGACCAG	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
GAGCCTGGTTTTGTCG	ref_4802_missing	1	3	1	1	15	4	2	2	3	1
CTTAGCATCATTGAAC	ref_4802_missing	7	14	5	2	11	11	11	6	12	8
GTTTTCGTTGGGTTGC	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
AAGCCGCCTTCTCGTA	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
GGTCTCCTTCGAATAT	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
ACAGATTCTGCGCAGT	ref_4802_missing	1	5	5	1	2	0	4	2	8	4
TCCGGTGCGTGTGGCT	ref_4802_missing	11	39	12	18	33	16	28	11	45	12
GATGTGTCCTTGACTG	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
TACTATGCGGCCCGTT	ref_4802_missing	7	11	9	7	10	2	14	6	7	7
TGACACTCCATCTACA	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
AACATGTCATTTACCT	ref_4802_missing	7	19	8	7	25	11	12	8	28	2
TGGACGAGTCCTCAGT	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
GCTCCTGCTTCAACCT	ref_4802_missing	6	21	10	15	25	8	19	9	19	9
CGTACGTACCGGTCAT	ref_4802_missing	6	21	11	4	20	7	21	3	22	4
TCCTAGCTTTGGGTTG	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
AGGTCCCTTCCCCGTG	ref_4802_missing	2	5	2	5	4	1	1	2	0	0
CGAAGACCTGTACATT	ref_4802_missing	7	7	7	3	8	4	6	6	8	2
AGGTGGCTAAGCCTCG	ref_4802_missing	4	3	2	1	2	3	4	2	1	6
ACTTATTTAATGCTCT	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
GTTTATATGCGAATAG	ref_4802_missing	0	0	0	0	0	0	0	0	0	0
CGCTCGGATTTATACG	ref_2384_missing	21	42	35	26	22	22	33	40	19	25
CCAAGGATCTTACAGT	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
TTCGTGTGGTTTACCC	ref_2384_missing	24	24	27	23	26	22	34	22	28	24
TATCACCCCCGAACCA	ref_2384_missing	35	48	29	27	34	43	44	20	57	17
CTCTGCCTTGGTTCTC	ref_2384_missing	57	66	61	62	59	47	57	41	61	52
CTGAGCTTTCGCTCAA	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
CATATTTAGGGCATTC	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
GAAATATTCGTCTTCC	ref_2384_missing	64	69	76	81	57	73	66	60	64	64
TGTGCTAGGGCAAGAT	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
TATTAAAGATTTCTGT	ref_2384_missing	29	22	34	27	23	38	34	26	23	34
AGCCACTTATAAGCTA	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
GCTCGACCTTAATGGC	ref_2384_missing	69	53	87	65	52	72	59	72	59	80
CGCTTGGAAAAGGTTT	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
GATTCGGGTGCCGTAT	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
CCACTTTGGGTTTCTT	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
CCTGCGTCACGGGGCG	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
ATGTTTGCCTAAGAGA	ref_2384_missing	29	56	39	25	52	30	45	23	63	43
CACGTTTGGCCGTGAG	ref_2384_missing	96	123	98	79	99	83	100	83	95	68
TGGAGTTGTTCATCGC	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
ACTTACCATAGTCTTG	ref_2384_missing	9	25	6	11	25	11	39	9	31	13
GCCCTCAGAAATAATA	ref_2384_missing	0	0	0	0	0	0	0	0	0	0
AACTCCCACGTAATTA	ref_2384_missing	20	34	15	22	29	17	28	19	35	17
TCTTTGTTGGTTGGAG	ref_2384_missing	2	1	0	0	1	4	1	3	0	0
TTTTTACTGTTTACCA	ref_3246_missing	156	112	188	147	128	124	142	156	152	152
GCTCTTCATGTGCATT	ref_3246_missing	84	70	107	79	72	69	58	61	91	72
ATTAACGGGCCACGCA	ref_3246_missing	145	94	167	123	109	114	103	155	113	132
TTTCGGTATATTCGGC	ref_3246_missing	19	19	37	26	19	27	18	26	28	21
TAGCGAACGTAATTCC	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CTGCTACGTTACTACG	ref_5145_missing	23	18	42	46	30	29	56	19	39	26
ACCTACTGATGGTGCC	ref_5145_missing	15	40	30	29	24	24	32	21	24	12
CTTAACGTTCCGCATC	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CCTCTCGTGTACCATT	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
AAGTCTCGCTTTAGTC	ref_5145_missing	6	19	9	16	9	15	17	4	15	5
CCTCACTACACGCTCT	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CTCGAGGAATGTCTCT	ref_5145_missing	31	25	25	19	18	23	29	18	37	22
TCCTGTGGTTGACTAC	ref_5145_missing	4	10	7	16	7	10	13	12	5	4
CGCGCTTTGTCAGGTC	ref_5145_missing	3	8	18	10	8	6	12	11	8	8
TAAGTATGGGACCCGT	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CGGGATGAGCCGCGAG	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CTTCCCTCCTCTTAGA	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CGGTTGTCTACCCGTA	ref_5145_missing	55	85	99	52	106	44	103	61	85	52
CTCACTTCAGTTTGCT	ref_5145_missing	9	6	12	11	14	1	8	12	15	13
AAGACCGACACCCATT	ref_5145_missing	31	34	50	41	41	30	41	34	48	24
GCAGCCCTAATAATCA	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
TATTGAGGATGGTTAG	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
GACATGGTAACACCCA	ref_5145_missing	13	13	11	7	16	10	8	9	12	10
CTATGGCCCCATGGTC	ref_5145_missing	13	19	14	16	28	19	16	13	18	10
TACGAGTAGGAGATTA	ref_5145_missing	26	39	42	39	50	38	27	36	45	39
TTCAATCAAGACTTAG	ref_5145_missing	9	11	18	8	22	10	19	8	9	8
CGTCCCTTTACTATGC	ref_5145_missing	25	43	29	27	27	27	37	27	30	29
AAGTACTGTGGGTACT	ref_5145_missing	60	98	63	62	75	66	107	63	89	53
CATAAACTGTGCGAGT	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CGGCACGTGGAAGGTT	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
AGGCTGTGTATGTGGC	ref_5145_missing	8	4	8	16	4	3	6	4	15	6
AGAGTACCGTTGGCAA	ref_5145_missing	2	10	6	3	3	2	4	1	4	3
GAGACTCTAATACCTA	ref_5145_missing	10	2	6	4	5	9	11	5	2	4
CCTCGGTATTTTATTT	ref_5145_missing	9	8	10	4	4	5	6	4	10	0
GTATATTATCTCATCA	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
GAGTTGTTCGGTGTCC	ref_5145_missing	16	8	10	9	15	9	9	4	11	9
TGGTTACGTGGTTGAC	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CCTATCTCGGTTATTG	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
ATGAGTCATCCTATTC	ref_5145_missing	32	50	37	35	21	25	40	22	37	30
GGTTTCGTTACATTTG	ref_5145_missing	63	68	75	71	82	63	96	67	94	62
CTTGTCTTCATTTACG	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
ACCACGCCTCGTTTCG	ref_5145_missing	15	16	23	16	19	15	21	8	18	9
TAAGAACATGTCGGTA	ref_5145_missing	44	66	71	48	41	40	57	36	57	49
AATTACTACACTGCGG	ref_5145_missing	3	2	8	6	6	4	6	8	8	3
GTAAGTTTGCTCGCCT	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
CGATTCCGCAAATTTC	ref_5145_missing	0	0	0	0	0	0	0	0	0	0
GGAATGTTATGACCTG	alt_317_missing	9	8	6	8	12	5	17	7	13	8
TTTCGCGACTGGACAC	alt_317_missing	15	23	15	22	25	20	16	15	18	17
GGTCTCTGTTTAATCT	alt_317_missing	110	141	129	96	110	97	125	90	154	111
GCAGACACGCATCACA	alt_317_missing	26	42	35	34	42	31	54	29	41	21
CCATCGTCGTTCTGAT	alt_317_missing	0	0	0	0	0	0	0	0	0	0
GTGCTAACACAGGCTC	alt_317_missing	0	0	0	0	0	0	0	0	0	0
TCCTTGCCTCAACAAC	alt_317_missing	52	85	70	46	77	52	87	38	87	56
TACTGACGGCGCTTGC	alt_317_missing	15	46	29	23	35	43	45	25	40	24
GACGCAGACTTTGTAC	alt_317_missing	29	34	35	22	52	27	33	20	45	16
TTTATCGTGTGATTTG	alt_317_missing	42	61	54	37	62	42	74	28	75	35
TTTGAGCATTTTTTCA	alt_317_missing	0	0	0	0	0	0	0	0	0	0
ACAACGACAGTGCAGA	alt_317_missing	0	0	0	0	0	0	0	0	0	0
TCGAGCTCTGCTGCAC	alt_317_missing	0	0	0	0	0	0	0	0	0	0
CGCTCTAGCGGCAGGT	alt_317_missing	10	11	8	11	16	11	10	7	20	5
CGTGGACGTAACATGA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TTTGGACGGCTTTCCT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
CCGTTTACCTGCGTAC	alt_885_missing	14	28	22	15	28	17	41	11	38	11
CTTACGAATTCCGTAT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TAGCTAATTTCAGCTA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTTACGAATCCG	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TCTTAGGTTCGTGCGC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GAAGTCCCTCTATTTC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TTGTGGTTTTTCCCTG	alt_885_missing	26	32	33	23	31	15	33	15	45	18
TTCGCAACTTCACTTT	alt_885_missing	4	7	4	2	4	2	11	0	4	3
GATACCATGTTTTTTC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TCGTAAGTGATTACCC	alt_885_missing	7	14	9	12	19	4	21	11	18	9
CCAAGTTCTATGCCTG	alt_885_missing	1	9	5	4	10	1	8	3	6	2
GTTGGGGGGAAGTATA	alt_885_missing	14	24	26	8	34	10	33	5	29	7
CCTCATTTATTTACGT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TCCTCCTGACAGAGTC	alt_885_missing	6	10	8	4	18	5	12	8	17	2
TGTACGTAACGTATTA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GGAACATCCGTTTCCT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
CGCTTTTGAACTACGA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GTCCTCACCCGAGTGC	alt_885_missing	0	10	0	3	10	2	25	1	7	4
TGATTGCTCTTCTTTT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
CTGGCTACGCGCCTGT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
ACTCAAGTTAAAGTTA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
AGTTAACATCGTCCCA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
ATGATGGCTGAGTCAT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
CATGGTTTCTTTTCTG	alt_885_missing	0	0	0	0	0	0	0	0	0	0
AAACGTTAGCCCCCCC	alt_885_missing	21	34	17	23	21	12	39	16	23	13
TTACCCTAGAACCCGT	alt_885_missing	1	6	0	1	6	1	5	0	3	1
CTAATAGTCGTTGTGT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
ATTATAGACCAAGCGC	alt_885_missing	3	8	9	4	7	3	9	5	11	4
CTCCAGGCTTACGCTG	alt_885_missing	12	60	8	8	60	8	55	9	48	9
TTTTCCTCTGGAATAT	alt_885_missing	11	9	3	2	9	4	11	3	3	7
ATAGACTTGCCCTGAC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TGCTGTTATATATGCG	alt_885_missing	24	27	15	13	25	19	34	17	45	22
GCCCCTCATCCCATAG	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TATGCTAGCACGTACT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
ACAGGGCAAGCTAGGT	alt_885_missing	5	11	4	3	3	4	15	0	11	2
ATATTACGTCGCTTCT	alt_885_missing	1	4	4	3	3	5	6	0	10	2
TTGGACAAATGTCATT	alt_885_missing	2	4	6	2	12	3	12	1	9	1
ATTTCTTGTTTTATTG	alt_885_missing	66	94	57	47	97	53	88	38	93	59
GGATCTCGATTTGGCA	alt_885_missing	6	11	4	6	13	9	17	2	10	5
AAATCAATCGTACTGC	alt_885_missing	47	74	34	47	75	38	75	34	99	38
AACCCATTGACACCCG	alt_885_missing	7	14	14	4	19	7	26	3	9	8
GTAGTGCGGTGTCAGC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TCTGGATTTCATGTTA	alt_885_missing	6	25	8	4	10	6	13	10	26	11
ATTGCTGCAAGAACTA	alt_885_missing	15	13	21	12	29	6	26	12	25	12
GAGGCAAACTCCTAGT	alt_885_missing	2	12	5	2	18	7	8	4	13	2
CAGAGAGACGCAGCCG	alt_885_missing	1	3	5	5	5	1	7	1	5	5
ACTAGATGACCAGTCC	alt_885_missing	9	16	7	4	22	7	18	11	28	11
TGCGTTCCGTGTTTTG	alt_885_missing	0	0	0	0	0	0	0	0	0	0
AATTACCTACCTCGAA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
ATCCATGCGTAGTTAC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TTCCCGTATGCGAGTC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GGCAGATTTGTGTCTG	alt_885_missing	17	43	16	13	25	17	28	16	35	18
GGCACTATAACTTCCA	alt_885_missing	11	15	8	1	13	4	10	4	10	5
CAAGTTTAATTGCCGT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TGGCTTCACCGTCGTA	alt_885_missing	12	33	15	13	21	7	22	12	29	17
ACATGGTTACTCCTGC	alt_885_missing	4	4	5	5	4	1	1	3	10	2
CGATATTCGCACAGCG	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GCCATCTCATGTTAGC	alt_885_missing	0	8	1	1	2	0	4	0	5	1
AATTCCAACTGTTAAT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GTACCTTAATTTGTCT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
ACTTCGCCAGGCGTCC	alt_885_missing	9	12	4	11	27	9	13	7	11	2
GTACCAGTTCACTTCG	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GTATCGCGATAGAGGT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GTTTCCCGCTGGTGCA	alt_885_missing	15	45	40	18	37	24	49	17	42	25
TATACATCACTCTATA	alt_885_missing	14	25	20	11	29	12	38	12	29	15
ACGTTATCGAAGTTTA	alt_885_missing	0	0	0	0	0	0	0	0	0	0
CTGACCCCCTGTAGTA	alt_885_missing	8	24	11	7	19	8	25	9	14	4
TCATTTGCTGTCTGAC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGATGCTAGTCC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
TTCGGTTCCTTAGTAT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
AACAGTTAAGTGTGTA	alt_885_missing	1	6	3	1	9	1	4	5	12	0
CGGCGAGCGCGATGTT	alt_885_missing	16	17	3	7	13	11	16	10	19	9
CTGATGTAGGTTCCTC	alt_885_missing	6	17	9	7	15	15	15	13	23	13
AATCCCGGAGTCCAGT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
ATGTTGGTCTGGTCTT	alt_885_missing	1	25	13	2	13	1	16	3	18	8
CGGTATCGATAAATTA	alt_885_missing	15	20	12	13	8	7	10	4	16	8
CAATCGCGGGTCGGCC	alt_885_missing	0	0	0	0	0	0	0	0	0	0
CCAGCTGAGGCAATCG	alt_885_missing	16	32	16	13	41	17	35	19	44	10
TACGGCAATTGGACGT	alt_885_missing	0	0	0	0	0	0	0	0	0	0
GACTTATCCATTTACC	alt_885_missing	4	13	3	9	8	8	15	9	10	5
AAGGGAAACTTTTATC	alt_885_missing	7	7	8	9	12	7	11	9	17	6
TCCTTTCACTCGCTAG	alt_885_missing	3	18	13	8	24	10	24	16	23	8
TATGAAAAACAATAGT	ref_3990_missing	0	0	0	0	0	0	0	0	0	0
TAAATTGGGTGTTCCG	ref_3990_missing	0	0	0	0	0	0	0	0	0	0
AGCTGGTGTTTCTCTC	ref_3990_missing	296	39	357	332	40	271	46	302	40	281
ACACATTCTAGTGTTT	ref_2882_missing	43	54	45	41	57	44	55	38	66	41
CACTTTTCCGCGCCGA	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
CATGGTTCATTATCCC	ref_2882_missing	6	9	18	6	13	4	9	16	5	12
TCCTTGTGCTTGGTGG	ref_2882_missing	6	8	15	2	3	10	12	12	10	8
GGTTGATGTATCTATA	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
CTCCTCCCACCCTCCT	ref_2882_missing	2	0	1	0	0	0	1	0	0	0
GTCTTTATCCTGAGTC	ref_2882_missing	11	9	25	10	16	10	14	16	15	14
GGCAGCTGACTTATAT	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
GAGGGTGCCCACTTCA	ref_2882_missing	11	5	9	8	2	3	7	4	5	11
GATTTCCAACTTCGGC	ref_2882_missing	17	23	15	15	23	31	36	25	24	30
GTGCCCCACGGTGCTT	ref_2882_missing	23	29	20	29	37	16	36	28	28	19
TATACGCGCTATACTC	ref_2882_missing	7	2	3	1	1	2	8	2	2	7
CTCGAGCAAGCGTCAT	ref_2882_missing	3	3	3	7	6	5	3	3	6	2
TGCCAATGGGGTGAGT	ref_2882_missing	26	33	26	24	24	24	40	17	28	22
TAGCATTATTTGTAAC	ref_2882_missing	3	0	0	0	0	0	2	0	1	3
GAAGTCCGCTCTTATC	ref_2882_missing	37	34	27	32	47	41	42	25	45	30
TGCCAATCCTTCGCCG	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
TATAAAGATCCGCCAC	ref_2882_missing	11	10	22	20	15	15	24	13	21	17
CCGGGCGCGATAATCA	ref_2882_missing	39	36	39	29	40	32	48	26	42	36
TCACCGCAGGGATACT	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
GCCTCACAGTATGATG	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
GGTTGCTTTATCACAG	ref_2882_missing	11	12	11	11	9	18	11	7	18	8
GCTCCGGGTAATCTAG	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
ATCAGATGGGCGACCG	ref_2882_missing	32	23	25	14	28	24	29	24	19	22
TAGGCCGTAGTAGATT	ref_2882_missing	8	10	16	10	7	10	10	4	12	7
GTATCACTGGACTAGG	ref_2882_missing	5	20	7	12	22	14	10	6	11	14
TTCTATAGGTCTAACG	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
AGCCATTATCATTCCG	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
CTTGTCGTTTAGGTGA	ref_2882_missing	4	18	7	7	9	11	9	8	6	12
GCTTTGATAACCTGGG	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
TCTCATTGTGAGAACG	ref_2882_missing	26	44	22	27	41	31	41	20	26	16
TGGCCCGATCCAATGA	ref_2882_missing	19	24	28	29	30	21	22	14	30	24
GGGACTTCCGGCATGG	ref_2882_missing	10	8	9	9	10	8	11	7	14	13
ATGGTATCACCCCAAG	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
CACCGGCAGTTTGGCC	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
TCCGTGTCCCCTCCAT	ref_2882_missing	9	17	20	13	17	8	9	12	13	14
CACGATCTTTGCTAGC	ref_2882_missing	0	0	0	0	0	0	0	0	0	0
GGCACTTTGCCTTGTG	ref_2575_missing	61	64	68	63	53	79	54	80	58	47
ATCACTTCCTCATGAC	ref_2575_missing	25	28	44	21	33	28	30	40	22	28
CTTTCTTTTTCTTATG	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
CCGGAGGAATGCTTTT	ref_2575_missing	143	122	219	166	122	141	123	160	130	144
CTTGTGTCATTATCGC	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
ACGGCTTTGCACATCC	ref_2575_missing	54	38	68	38	53	68	40	52	45	43
TTCCGCTCTGTCTCGA	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
ATCGCATGTGTCGTTT	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
CCATTGTTCAACCAAA	ref_2575_missing	27	29	47	27	33	17	40	30	34	28
TTATGTTTTAGTTATA	ref_2575_missing	33	26	28	40	23	28	23	29	28	21
ATAGGCCGGTTAGACG	ref_2575_missing	59	28	59	51	49	38	47	46	45	35
TAACGTTGCGATCTTT	ref_2575_missing	23	20	29	34	20	19	7	15	21	17
TGGTATTACTCCTCAG	ref_2575_missing	58	46	54	36	41	56	31	44	39	37
ATTTCGCCACTGTAAT	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
GTGCTTTCCTACCCAT	ref_2575_missing	47	42	72	46	62	47	48	38	41	46
AATAATCCTCGTAGGC	ref_2575_missing	110	59	104	88	63	103	80	87	65	87
ACGGTTAGTGCATAGC	ref_2575_missing	18	12	21	19	6	12	5	11	12	17
CTGTTTCCTTTTATAT	ref_2575_missing	26	27	35	31	22	33	20	33	26	34
GTGCTTATGTATCCCG	ref_2575_missing	6	5	10	17	7	12	7	2	5	12
GGGTACCTCTATGCGA	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
TGACTTGGTTGTTATA	ref_2575_missing	35	30	48	42	39	37	33	28	36	28
GGACAGCCGCCTTAGG	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
AGCCCGTGACATGTAT	ref_2575_missing	38	29	34	31	24	23	29	24	21	24
CTGAGCGGCACGGAAG	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
GTTTGCGTGGAGATAT	ref_2575_missing	7	6	12	4	4	3	9	7	9	9
CAGCCGATTCTATCAG	ref_2575_missing	15	32	21	27	39	25	24	22	34	15
CATCTTATTTCGCAGC	ref_2575_missing	10	8	21	7	4	15	11	7	11	14
AAATATGGCTCCACTT	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
TGGAACCCTAAGCTTT	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
CGTTGTGGGGTATCGT	ref_2575_missing	45	56	58	56	61	46	55	45	56	58
ACTGGTGGGACCATCA	ref_2575_missing	0	0	0	0	0	0	0	0	0	0
TTTGCCGGGTGCATCT	ref_2575_missing	23	27	34	34	21	28	23	14	29	21
TCGATTCGTTCTGAAG	ref_2575_missing	35	19	50	24	21	30	30	27	23	24
GCATCGCAGTGGCACC	ref_2575_missing	92	58	110	76	51	93	61	87	50	77
CATGCTGCGTGCATAG	ref_2575_missing	14	13	24	18	17	20	10	9	16	17
TCAACGACAGGTGTCA	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
GTCCCTTAGTTATAGG	ref_4360_missing	33	64	35	46	57	36	64	35	58	37
CCCTTGCGAAGGCAGG	ref_4360_missing	13	12	12	12	14	11	16	17	19	6
GAATCTTTACTGCGTA	ref_4360_missing	56	81	63	41	86	55	87	43	74	36
GATTCATGTGGAGCGT	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
TCTATGCTCAGTACAT	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
ATCCTCATCTGGTGAC	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
GGTTGCCCTAACTCCA	ref_4360_missing	6	14	7	15	13	12	12	12	18	9
ACCCTTTTCAGGTCGA	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
CCATTATCTGAGTACC	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
GAAACCGAGATCTGCA	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
TGGTTGCTTTAATATT	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
CCCTTACGCGCAATAA	ref_4360_missing	18	41	27	26	34	29	45	24	42	13
GCCAGTAGGTTTTGAC	ref_4360_missing	10	32	9	10	23	13	16	6	23	14
TAGATGCAGACTCGAT	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
AGTCTCCGTTTCTCGT	ref_4360_missing	61	101	75	89	108	75	113	73	121	84
GGTCTAGTCAAACAAC	ref_4360_missing	18	45	24	18	42	30	41	22	41	14
TGAACGAAGGGGCGTC	ref_4360_missing	47	77	66	55	83	35	64	46	81	35
CTATGCGTTTATTGTG	ref_4360_missing	14	30	22	23	43	15	35	17	36	11
ATCAACGCTCGTTCCC	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
CGAGTTGTGATACTGG	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
CCCTTGTTTACACCTT	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
ATTAGCGAGGACTGTT	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
TCTGGGTCAATGGCGC	ref_4360_missing	21	48	23	30	49	24	46	26	51	21
AAATGTCTAGACATGA	ref_4360_missing	0	0	0	0	0	0	0	0	0	0
TCTCATTCATGTTAGG	ref_4360_missing	38	56	27	29	52	11	47	15	61	16
CTCGTGTTGGTAGGGT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
CTTATTCCTGATCATT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TCGCTTCCGGCGCGAC	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TTCCTGTTTGCCAACA	ref_1186_missing	1	0	0	0	1	0	4	0	0	0
GCTTCTCTATTATATG	ref_1186_missing	13	26	28	15	40	18	26	24	31	10
GTAGCCTCAAATTAGG	ref_1186_missing	1	2	2	4	1	3	0	4	3	1
TACCATGTCGGCCTGG	ref_1186_missing	11	17	20	4	12	10	14	10	11	6
GCCGTATGTCTCCTAT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
CAGGAATGCATATAGC	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TTTTCCCCCGGGAGCG	ref_1186_missing	2	3	4	2	6	0	2	2	3	2
GTGATTATGTAAATGC	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TTACACCGCCGCCCGT	ref_1186_missing	8	10	10	6	6	4	10	11	14	3
TGTGTACGTCATGGGT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
AGTAATGTAGGGCAGT	ref_1186_missing	7	13	14	10	23	12	9	9	14	6
ACACCTAGATCGCCGA	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
CCCGATTTGTAAAAAG	ref_1186_missing	3	7	4	7	4	4	5	2	9	2
AAATGCTGCCCGAATT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
AGTGTGTGGTATGCCG	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
GTTCTATTACTTCCGT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
ACAGCTCGCCGCGTGA	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
GTCTAGCTGGCGGACC	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
GTTGTGCTATAAATAT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
CTTATCGGGTGGCGCA	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TGATAAACTCCACTTG	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TCTTCAGCGAGGTATT	ref_1186_missing	17	17	25	18	24	18	24	22	26	11
GATGCGTACATGCGAG	ref_1186_missing	1	0	1	0	2	1	0	0	2	0
TCGCTCTCCGATCGTT	ref_1186_missing	7	18	16	7	18	14	19	11	13	10
GTGCTCGTGTTTGTCG	ref_1186_missing	10	9	4	1	9	6	8	7	8	2
GTTCAATAATCTTATC	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
ATCCCGGACCCCTCTG	ref_1186_missing	11	15	12	8	14	10	19	3	20	7
CACTGTCTCTATGTAT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TTTCGTTGTATCCTCT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTGCTCTATAGG	ref_1186_missing	14	32	36	16	47	23	50	26	42	20
CGGATATCATTAGGGG	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTGTACCAATAT	ref_1186_missing	6	6	4	3	5	0	11	2	8	2
TGCCTGTGGTCTATTC	ref_1186_missing	4	2	1	0	1	2	0	3	7	1
TCCTTCCGTTATCTAG	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
ATTATCTGTTTAAGGA	ref_1186_missing	28	54	42	25	41	39	59	36	57	23
CGCCTATTGTTTATCC	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
TAGCGTTCCGTGGAGG	ref_1186_missing	18	11	14	14	23	17	21	12	15	13
GACTTTCCTAGAAGTG	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
CTTTGCGCATTGCACG	ref_1186_missing	2	3	1	5	13	2	3	7	12	6
TGTATCCTTGATAATT	ref_1186_missing	0	0	0	0	0	0	0	0	0	0
CTTCGCCGGTAACTGT	ref_1186_missing	6	7	3	3	6	4	16	9	7	4
CGGTTAGTTTGCGTAA	ref_1186_missing	11	22	17	14	26	21	25	13	23	9
CCTGGAATGGATACTG	ref_4876_missing	92	104	127	88	96	83	83	99	103	90
AACTCGCGCGTTCCCT	ref_4876_missing	7	14	13	8	13	11	13	15	7	6
TAAGCCCGTGCCGTTT	ref_4876_missing	358	281	412	316	344	319	317	262	366	335
GTATTTGCGTGCCTAT	ref_4876_missing	60	70	68	72	62	79	79	65	66	54
GGTATTCTCCTCCTTG	ref_4876_missing	34	50	71	34	58	38	52	40	52	54
TTCTTATCTCGCCCGC	ref_4876_missing	143	68	148	110	56	116	68	110	71	122
GAGTGCCCAAAGGTTA	ref_4876_missing	0	0	0	0	0	0	0	0	0	0
TATCTCTATTACACTC	ref_4876_missing	22	45	19	22	45	14	52	14	40	16
AGACTTCGGATCTTTG	ref_4876_missing	0	0	0	0	0	0	0	0	0	0
TCAACGTTGTCTTCTA	ref_4876_missing	18	9	27	13	19	16	13	16	20	14
CCGATGATCAGCTTTA	ref_4876_missing	4	7	10	5	10	6	9	4	9	4
CGGGCGGTTACACTAC	ref_4876_missing	28	22	47	32	18	41	32	28	33	34
CTTACGTTCATCGGTA	ref_4876_missing	98	107	133	119	94	80	104	92	113	95
ACTTCCAGTGGCATGG	ref_4876_missing	149	83	171	150	85	150	112	136	136	147
GAAATTCAAATCAATT	ref_4876_missing	11	9	11	6	11	3	6	7	9	7
GTAGGTCTCATAAAGT	ref_4876_missing	229	211	324	209	228	235	210	250	234	204
CACTGGTAGTTAACGT	ref_4876_missing	122	128	133	102	116	118	111	129	118	107
TACCCTAAATTTCGGA	ref_4876_missing	19	14	14	15	10	12	6	6	10	8
TCGGTCGGTCCCTAGA	ref_4876_missing	103	71	104	98	79	86	91	84	102	94
CATCCCCCGTGGAGGT	ref_4876_missing	64	68	107	100	86	83	91	81	98	66
ATGAGTTCCTGAATCT	ref_4876_missing	0	0	0	0	0	0	0	0	0	0
ATTTTTCTATGCGTTG	ref_4876_missing	12	14	18	12	8	10	11	21	10	8
TAACGTTCACTCAGAT	ref_4876_missing	0	0	1	1	1	0	0	0	0	1
GCCACTCTGGGGGATC	ref_4876_missing	126	166	154	145	118	130	165	139	159	122
TGTCCGTATGTCTTGT	ref_4876_missing	221	232	244	206	238	209	248	221	228	218
AATGTAGCGTTAAATC	ref_4876_missing	42	42	44	36	59	44	43	41	36	31
TGTTTTCTCCAACGTG	ref_4876_missing	100	116	123	105	144	119	98	113	113	114
GGTACTTTTGGGTGTG	ref_4876_missing	28	45	34	35	48	35	34	35	41	25
CACATAGGTATAATAC	ref_4876_missing	26	16	33	22	31	30	21	12	19	20
GTTTAAGATTCTCAAA	ref_4876_missing	22	34	21	20	27	21	27	28	32	22
CGATTTTCAAACGGTT	ref_4876_missing	13	7	14	5	14	5	13	19	15	6
TCCACTTTTCCAGGGC	ref_4876_missing	144	132	136	128	145	153	143	129	174	129
ATGCCTGCTCTGGGTG	ref_4876_missing	13	26	22	23	22	21	12	19	28	10
AGCTAACATTCTAGCA	ref_4876_missing	0	0	0	0	0	0	0	0	0	0
ATCTAGGCTATGATCG	ref_4876_missing	13	26	20	15	46	13	26	19	29	11
GTTTTGAGCATACTGA	ref_4876_missing	4	10	4	5	3	6	8	9	11	7
TTAGAGGGTTAGCGCC	ref_4876_missing	13	11	23	11	13	7	10	10	13	11
CTGGGCTTTCAACGTG	ref_4876_missing	113	111	146	113	111	123	131	102	108	99
TGTTGGATCCAGAAAT	alt_4064_missing	0	0	0	0	0	0	0	0	0	0
CGAATTGCGGGACATA	alt_4064_missing	0	0	0	0	0	0	0	0	0	0
AGCAAACCGGTACAAG	alt_4064_missing	14	10	13	9	8	3	4	11	11	13
TCCCTGCCGACAGTCT	alt_4064_missing	0	0	0	0	0	0	0	0	0	0
TATAGTTTGTTTGAAT	alt_4064_missing	0	0	0	0	0	0	0	0	0	0
GGGTTGCTAAGAACAT	ref_5316_reverse	25	26	31	16	17	15	22	9	32	21
ACGCGCTTACCAGCAA	ref_5316_reverse	15	20	20	16	22	12	26	14	20	16
CATTGACGACCTTCCT	ref_5316_reverse	36	41	36	27	37	22	45	27	37	30
AAAAATCTACTTTCAC	ref_5316_reverse	21	50	44	40	38	39	60	50	51	35
GGGATTACCACAGAGG	ref_5316_reverse	27	39	19	25	32	17	27	17	49	20
CACATTGCTATTTGCG	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TCGGTCACTTGTCTGA	ref_5316_reverse	6	2	6	3	4	8	7	3	3	5
CCCACCGTGGGTTTTT	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
GGGCTTTGCTTCGTTT	ref_5316_reverse	11	31	12	10	13	14	18	14	12	8
TGTTTTTAACCTTCAC	ref_5316_reverse	58	71	49	46	65	69	77	46	82	41
GCCTACCTGTCTCACG	ref_5316_reverse	0	9	5	4	10	9	9	2	12	2
AGTCTGGATGCAGTTC	ref_5316_reverse	3	0	2	2	5	1	4	4	0	0
TCATATGACATCGCCC	ref_5316_reverse	1	1	1	4	5	4	6	0	5	4
GAGAAATTGGTTATTA	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
GACCCGATTGGTGAGA	ref_5316_reverse	87	131	97	91	128	65	128	87	141	83
GCGATATTTGGCCGCC	ref_5316_reverse	25	37	35	24	36	25	25	22	44	22
GCTTACTCAAGGATTC	ref_5316_reverse	33	28	39	24	41	24	32	20	26	32
AGTTGCAGGTACTTTA	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
CAACCTCACGGTGGTG	ref_5316_reverse	46	69	44	46	81	45	71	42	84	30
CTAGGATTGCCGTTGG	ref_5316_reverse	2	6	7	8	11	9	8	4	16	3
GGCCTCCGGCGTTTTT	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TGTCCGCCATGGTCTA	ref_5316_reverse	3	0	1	7	2	0	3	1	1	4
CGTCCCTGATAACTCT	ref_5316_reverse	10	16	12	9	13	13	7	2	16	8
ACGGGCCCCAAAAATT	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
CTTCTCCAAGTAACCC	ref_5316_reverse	6	5	11	7	8	8	6	5	9	3
TCCACTGTTCGTGGCC	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
AATGCCTAATAAGTGT	ref_5316_reverse	74	105	82	103	114	76	129	67	120	73
CAGTGGCGTTGTGCAT	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TACATCTATGGCCAGA	ref_5316_reverse	11	10	14	18	18	19	9	8	32	17
GCGTTTTTTCTGTTTA	ref_5316_reverse	2	0	1	2	2	0	6	5	1	4
TTGAGTCGCACTTTTT	ref_5316_reverse	51	93	51	63	83	60	94	36	127	58
AAAGTGTTCCCTCGGA	ref_5316_reverse	12	17	14	11	9	8	7	8	21	5
CGAACCTCTCTGATTG	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TTCTTTTGGTCAGGCT	ref_5316_reverse	13	31	20	19	31	23	29	20	31	20
ACAACTGGATTTTATG	ref_5316_reverse	7	15	15	9	25	12	22	12	18	9
AAGTTTCCTGTATATT	ref_5316_reverse	79	85	86	75	120	82	82	76	98	76
ACGTCTCCAGACGTGC	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
GGCCTTGGTGTTGCTT	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
CCCTTAAGGATGTTCG	ref_5316_reverse	22	38	25	22	31	14	29	26	32	24
GCTGTTTTCTATATGG	ref_5316_reverse	19	31	25	29	27	20	32	18	32	26
TGAAAGTACCGTATGA	ref_5316_reverse	27	39	31	15	35	23	39	14	30	31
TGGTGGCTGTGTCAAG	ref_5316_reverse	8	14	14	13	12	12	17	13	11	5
TATCCGCATCTCGCGC	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
CGACTGTTCTCGCTCG	ref_5316_reverse	16	26	43	19	26	18	37	20	38	22
GAGCTAGCCCCTTTGG	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
GCACACTACGATTTAT	ref_5316_reverse	5	8	5	2	2	2	3	4	9	1
TTATTTAAATATCCTG	ref_5316_reverse	7	14	13	9	14	9	10	14	16	6
TTGTTAGTTCGAGCAT	ref_5316_reverse	0	0	0	0	1	0	0	0	0	0
ATTTTGATCTAAGGCA	ref_5316_reverse	25	23	17	23	14	6	18	9	14	9
GGGCCTGGATGATCCG	ref_5316_reverse	33	44	21	39	38	52	49	41	43	37
ACTGTATATTTCTAAG	ref_5316_reverse	32	56	41	30	39	27	51	26	41	26
ACCTACCCTTGTCGTT	ref_5316_reverse	40	91	47	35	101	34	95	37	115	40
GTTAGTCTTCTGCATC	ref_5316_reverse	9	11	8	3	9	8	10	1	12	8
CAAGTCGCACCCGAAC	ref_5316_reverse	0	1	1	0	6	0	0	0	0	0
TTTATGAGGTTTTCCT	ref_5316_reverse	24	36	34	28	38	24	33	44	46	14
TCGGAATAAAGTGCTC	ref_5316_reverse	3	5	6	4	2	1	11	3	5	3
CGACTACGGCCGGTAG	ref_5316_reverse	116	200	155	131	181	131	230	105	194	99
CAGCCTCCAAGAAAGT	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TATTAACAGGTCAAGC	ref_5316_reverse	10	6	9	6	14	7	12	3	17	7
GGCCGCCAACTGTCCC	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TTACGCGGATCCACGC	ref_5316_reverse	2	4	1	6	2	5	6	0	3	2
TATGTGCATGCTGGCT	ref_5316_reverse	6	12	14	6	11	9	16	6	6	7
TGTAAGTCTAGCGCAA	ref_5316_reverse	22	28	21	20	35	20	36	18	36	20
TGCGCGAGGAAAAATA	ref_5316_reverse	22	40	47	31	42	18	42	23	41	16
CCATCCGGACTACCCT	ref_5316_reverse	5	5	2	3	9	4	12	3	16	3
TGCGTGTCTATGACCG	ref_5316_reverse	65	88	60	63	95	57	109	56	98	51
ACGCCATAACAAGTTT	ref_5316_reverse	14	16	22	14	23	13	28	11	15	15
GGCACATGCGGAGCTT	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TGATCCGGATTGGCTA	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
AGGCCTGGCACCCCTA	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
CCATATAGTCATTTAG	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
TGCTTCATGTGGGTAT	ref_5316_reverse	31	33	30	23	26	20	28	25	45	18
AATGCTCGCTTCTTCC	ref_5316_reverse	55	39	55	38	65	43	52	33	61	41
AAGGATCCACCCAGAG	ref_5316_reverse	8	21	7	13	8	8	15	11	14	7
TCCCGTTATTATGTTT	ref_5316_reverse	15	6	6	3	10	5	15	14	15	6
TTCGCTTACACGACTA	ref_5316_reverse	10	8	12	9	8	8	14	8	11	8
TCACTCGCTAAGTAAT	ref_5316_reverse	2	6	6	6	11	3	6	2	9	9
TGGAGACTTAGATTTT	ref_5316_reverse	3	3	1	6	6	1	6	0	5	3
ACTTGTAGTTGGCTTG	ref_5316_reverse	4	14	1	1	14	2	11	4	11	0
CTCCTGGCCATCATAA	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
GTTATCCCAGCACCTT	ref_5316_reverse	7	22	19	20	18	13	23	7	25	5
ACTTAGGAAAAACTTC	ref_5316_reverse	31	40	30	23	39	27	30	22	39	7
TATTTTCGTCTGGCGG	ref_5316_reverse	0	0	0	0	0	0	0	0	0	0
GACCATTCATCTTGAC	ref_5316_reverse	7	17	7	13	15	1	7	5	7	3
TCGGTATATCAGTAAG	ref_5316_reverse	1	0	8	2	7	2	8	3	10	1
CTCGCCGGAGTTGGCT	ref_5316_reverse	1	2	2	0	4	3	2	1	0	1
CCAGGACCTACAGTTC	ref_5316_reverse	8	22	11	17	22	10	26	18	33	21
CAAGTCTCATCAGGTT	ref_5316_reverse	35	57	48	35	52	34	58	37	57	27
CCAGGGATTCTCGATT	ref_5316_reverse	3	20	8	8	22	9	11	11	18	4
ACCGTAATCTACCGCC	ref_5316_reverse	10	45	9	16	43	9	53	12	40	14
GTTTTTCCACACGTCC	ref_5316_reverse	31	67	49	41	44	34	78	41	82	28
GTGTGTCCCTCACTGT	ref_5316_reverse	0	0	2	2	2	1	0	1	2	1
GTTCACGACAGCTTTA	alt_5189_missing	0	0	0	0	0	0	0	0	0	0
TTTAATTTGTGAAGGT	ref_5978_new	43	42	36	31	57	27	55	26	51	20
TATGTATATAGAGTGC	ref_5978_new	28	50	33	27	58	31	44	14	54	29
TTAGATTCAAGGGATA	ref_5978_new	8	5	1	1	3	4	4	1	6	1
GCTATGAGTCTTACAT	ref_5978_new	9	8	10	3	12	2	9	4	10	5
GGCGTCTCTCCTGCCA	ref_5978_new	13	18	19	13	20	9	26	17	32	10
GCTTGGGCCATAGCGC	ref_5978_new	62	67	55	40	64	40	78	31	80	40
TTACGAATTACCCTCG	alt_5978_new	138	207	143	108	180	92	215	100	195	106
CTCTTCCACATCCATT	ref_5978_new	3	15	2	9	9	6	15	6	9	8
GCATTAGTAGTACCCT	ref_5978_new	50	89	94	70	106	62	100	81	102	59
TCCTCAGGATCTTGGT	ref_5978_new	4	14	6	6	11	7	28	9	18	9
CGGGCTAGCATAGAAG	ref_5978_new	75	143	93	90	113	71	143	81	130	69
CAGCGGGTGTCGTTCA	ref_5978_new	169	370	271	231	367	195	378	258	384	221
CAACAAGCATTATTGA	ref_5978_new	0	0	0	0	0	0	0	0	0	0
GATAATACGTATGGGA	ref_5978_new	50	79	67	45	67	61	96	52	114	38
CAGTAGTGTAAGGCAT	ref_5978_new	26	52	38	31	65	34	68	33	61	35
AATACTTTAATAATCA	ref_5978_new	17	23	17	17	26	20	30	16	22	16
CTTGGGCAATTCTGCG	ref_5978_new	0	0	0	0	0	0	0	0	0	0
TTTGTCATCTTAGAGC	ref_5978_new	0	0	0	0	0	0	0	0	0	0
GTTGTGTAATCCAGTC	ref_5978_new	0	0	0	0	0	0	0	0	0	0
CGGACACAGTTCACTC	ref_5978_new	53	84	63	42	92	41	62	35	105	44
GAATGCAAATTCTTGT	ref_5978_new	35	52	30	35	55	22	44	36	45	26
TTTTGCGGTCGCTTCC	ref_5978_new	13	19	15	20	22	19	16	14	26	9
TTTTGTTCGTAGCTGC	ref_5978_new	0	0	0	0	0	0	0	0	0	0
AGGGCCTTCCCGCACA	ref_5978_new	38	63	39	35	65	43	71	32	69	23
TACGTATTGCACGTCA	ref_5978_new	23	39	25	19	39	15	31	12	30	16
GATAAGGTCTTTAGGA	ref_588_upstream	409	120	480	372	96	377	132	401	126	337
CCCCTGTCCAATATGG	ref_588_upstream	0	0	0	0	0	0	0	0	0	0
CTTCAGTATGATGATT	ref_588_upstream	385	102	496	447	100	374	119	395	114	356
TAATTTGGCACGCCTA	ref_588_upstream	0	0	0	0	0	0	0	0	0	0
GCTCTCCTAGTTGGCA	ref_588_upstream	0	0	0	0	0	0	0	0	0	0
TGTTTATGGCTGTTCA	ref_588_upstream	280	101	342	339	63	286	82	255	100	235
CGTGTACGCGCAGGGT	ref_588_upstream	160	47	167	151	32	134	62	151	53	132
TCTCCTAATTGTGTAT	ref_588_upstream	167	51	211	194	41	186	37	145	52	147
GTATAGCTTACCTACA	ref_588_upstream	104	37	125	105	42	88	39	77	47	90
ATCCAGCCTCTGAGCG	ref_588_upstream	84	22	84	62	21	50	19	61	15	51
GCGTCCGTAGGATCAA	ref_588_upstream	22	4	22	24	7	24	11	17	7	14
TTTCATTAAAGTACGA	ref_588_upstream	0	0	0	0	0	0	0	0	0	0
ACTATCACCTTAGCAG	ref_588_upstream	0	0	0	0	0	0	0	0	0	0
AGGTTTGAATCCTGCA	ref_588_upstream	187	61	190	203	61	162	56	178	55	161
TTATTTGTCAGCTTGA	ref_588_upstream	639	175	813	689	196	582	192	581	180	585
CGGGGGCACTCGCTAC	ref_588_upstream	8	3	17	14	4	15	7	13	3	11
CGTGTTAAGTGGCCGG	ref_588_upstream	194	57	208	194	58	152	76	151	55	126
CGCCGTTGCACGCTTA	ref_588_upstream	38	8	35	22	6	18	3	23	9	22
TCCTCAGCACTAAGGC	ref_588_upstream	309	95	386	324	96	255	90	244	92	274
AATTCGCTTTATTTGT	ref_588_upstream	320	50	367	333	52	290	62	270	71	248
AACGATGGGAGGTGTC	ref_588_upstream	179	63	242	218	40	203	55	198	69	151
TGGAACACGTCTTAAC	ref_588_upstream	0	0	0	0	0	0	0	0	0	0
TTCCACGGTTAAGGGG	ref_588_upstream	0	0	0	0	0	0	0	0	0	0
GCGACGAGGCCAACAG	alt_3747_missing	0	0	0	0	0	0	0	0	0	0
CGCTCTCATTGCTACT	alt_3747_missing	0	0	0	0	0	0	0	0	0	0
CTGTTCTGCGGTTCTG	alt_3747_missing	0	0	0	0	0	0	0	0	0	0
GATGTAACTGGAACAG	alt_3747_missing	0	0	0	0	0	0	0	0	0	0
AAACGACTCAACAGAT	alt_3747_missing	3	4	4	1	2	1	0	0	3	1
CTCCTTTTTGGGAACC	alt_3747_missing	0	0	0	0	0	0	0	0	0	0
CCTGCTACATTGTACG	alt_3747_missing	0	0	0	0	0	0	0	0	0	0
CTATACCCAGTTAGTA	alt_3747_missing	0	0	0	0	0	0	0	0	0	0
TGCAAGTCAAGGTAAG	ref_5936_new	19	24	42	31	31	29	24	27	48	42
TCAAGTGAGATTTGAG	ref_5936_new	0	0	0	0	0	0	0	0	0	0
TGTTGCTTCGATCAAT	ref_5936_new	180	220	262	188	237	181	249	203	250	174
TTACTCTCTGATAGGT	ref_5936_new	63	72	69	66	103	48	82	51	80	61
TTGTGACGGAGGGGTT	ref_5936_new	63	87	97	72	81	66	104	51	101	61
TTGCCCATGTCTTCTC	ref_5936_new	53	62	55	53	64	48	68	47	58	55
TATATCGATTTATTGA	ref_5936_new	57	43	36	55	51	43	42	33	52	32
ATGTGCAGCCTTACAT	ref_5936_new	16	25	22	21	23	15	35	29	28	16
TGGGTCTATCTCTTCA	ref_5936_new	0	0	0	0	0	0	0	0	0	0
AAGCGGTGCTTTTGCT	ref_5936_new	16	26	21	21	28	19	23	25	33	28
TTACACAAGCAGCCAT	ref_5936_new	0	0	0	0	0	0	0	0	0	0
GCAGCGTTGTCTCGCC	ref_5936_new	9	7	6	6	8	10	11	6	10	3
ACCCGATCTTGGGATG	ref_1363_fdr	76	64	82	57	71	61	64	56	73	69
TTTGAGGATATTCCTG	ref_1363_fdr	39	28	51	43	36	44	28	34	40	38
TAAGGTCGTATTTGCG	ref_1363_fdr	22	26	27	39	31	34	14	27	24	33
TTTTGTGTAGTGCAAC	ref_1363_fdr	34	68	57	54	48	47	49	44	45	47
CCGTTGGCTTGTTAAC	ref_1363_fdr	19	49	40	11	40	16	51	18	51	18
GATCAGCATATGCTTT	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
GGCTACAAGACCTGAT	ref_1363_fdr	37	42	56	48	46	45	45	43	43	29
GGATATCCTCCCACAT	ref_1363_fdr	25	18	21	34	15	27	12	12	27	11
GTGCTGGGGGTCATAT	ref_1363_fdr	8	7	12	15	11	13	5	17	12	6
CCTAAACCGACTACCT	ref_1363_fdr	5	6	18	10	7	6	5	9	10	8
TTTGACATTTGCTTGG	ref_1363_fdr	31	21	30	28	24	24	23	18	25	23
TCTTCCGCCGCTCAGC	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
TTAATACACCATTTAG	ref_1363_fdr	57	52	51	49	31	49	55	47	63	44
CGTCACCGAAGTTTAT	ref_1363_fdr	61	78	84	72	48	54	53	67	73	44
GCTCTATCCAGTGTCG	ref_1363_fdr	67	44	59	40	51	51	46	54	57	48
GTTGGCCGACATCAAC	ref_1363_fdr	102	74	118	111	85	120	95	90	89	87
TCTAATGCGGCTGGAA	ref_1363_fdr	103	88	116	91	98	93	94	81	95	83
CGACAGTCAATTGTCC	ref_1363_fdr	81	89	133	77	92	91	80	70	91	88
TGTACATTCAAATACG	ref_1363_fdr	114	100	129	112	115	112	107	100	107	92
ATGGATCGTCTCCATT	ref_1363_fdr	0	2	2	0	5	5	5	1	1	3
GAAATTGACCCCCGTT	ref_1363_fdr	45	34	55	66	37	45	38	41	41	46
CATGTGATTCAGATGT	ref_1363_fdr	23	15	24	30	14	31	18	29	22	15
TCAAGCGTTCTGACGG	ref_1363_fdr	21	11	18	18	21	13	10	16	20	7
ACTAATAGCCTCTTCC	ref_1363_fdr	27	30	33	32	31	34	25	29	29	18
GCCCCCCATATCATTG	ref_1363_fdr	72	90	104	92	92	92	96	87	89	87
GCCTCTTGAGATTCTG	ref_1363_fdr	21	24	31	25	20	35	33	11	30	17
GTGGAGTGGGTAGGCC	ref_1363_fdr	32	26	35	36	16	44	20	17	25	33
CTACAGTTCTTCTTGT	ref_1363_fdr	15	15	23	16	12	23	19	25	22	16
CAGATTTGCACCTTAC	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
GATTCCAGTGGGGATT	ref_1363_fdr	6	5	6	7	1	5	8	4	6	8
GCTCACGCTCTGCAAT	ref_1363_fdr	116	89	116	108	110	120	119	100	95	103
CATAGCACTACACCTG	ref_1363_fdr	50	57	64	54	68	56	67	36	62	53
GCATTGCACGTGTCTC	ref_1363_fdr	107	127	145	121	115	107	113	143	106	105
CGAAAACCCTGGACTC	ref_1363_fdr	36	40	50	46	42	33	53	36	51	36
AAAGTCCGATAATCAG	ref_1363_fdr	100	81	83	83	62	76	83	77	56	61
GCATACATTTTCCAAG	ref_1363_fdr	52	54	66	47	54	40	43	65	42	41
CTACCGACTAACGGTT	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
TATTGCAATCTCCGCT	ref_1363_fdr	23	30	35	52	30	30	27	33	23	26
CGTTAGAACTACGGCG	ref_1363_fdr	19	20	27	19	23	16	28	22	31	27
CATCCCTATCTGGAAA	ref_1363_fdr	99	84	129	81	123	71	95	77	106	95
ATTATGTGGTGAGGTC	ref_1363_fdr	23	16	23	17	11	13	22	13	18	13
ATCGGATTATGGGCCT	ref_1363_fdr	88	52	79	80	73	65	90	67	77	60
GTAGACGTCTCATAAG	ref_1363_fdr	30	29	38	22	23	37	27	28	33	28
TTTACTCTAGCGCTCC	ref_1363_fdr	128	95	104	102	68	76	97	82	122	110
TGGTTCGGGACCAGAC	ref_1363_fdr	106	83	127	124	78	104	80	107	108	93
GGGGCCAGGAGTCGAC	ref_1363_fdr	26	24	34	32	25	29	26	27	24	23
ACGGGTATCCACTGCA	ref_1363_fdr	12	25	15	21	22	14	23	13	28	12
GACCTTTTGGTCTAAA	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
CCATAAGGGGTTGGCC	ref_1363_fdr	47	39	49	47	35	30	41	45	43	53
GCGCGGAAACACACTG	ref_1363_fdr	29	25	39	29	18	25	22	15	19	17
GTGGAAATGTCCACTT	ref_1363_fdr	77	84	98	86	60	72	78	64	74	62
TCCTGCTCTTCTGCGG	ref_1363_fdr	10	6	2	8	5	7	4	9	7	4
CGTCATCTTCGATCTT	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
CTATTCGTGTGTAGTC	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
CGGCCCACGTTAAACT	ref_1363_fdr	81	85	120	91	84	80	89	71	104	82
TGGGTACTACACGCTC	ref_1363_fdr	47	58	73	70	67	47	69	54	66	50
GCGCATAAACTATGAA	ref_1363_fdr	14	9	12	12	8	9	12	13	11	11
TTCTGCGCACCCGTGA	ref_1363_fdr	6	2	2	4	3	4	2	3	5	1
CGAAAAAAGTTGGTAT	ref_1363_fdr	46	76	74	74	62	55	70	55	56	61
CACATGAAGTGTGTCA	ref_1363_fdr	0	0	0	0	0	0	0	1	1	0
AAGTAGATCCGTATTG	ref_1363_fdr	103	100	127	115	93	101	116	100	101	99
AATCACGGGAAGCATG	ref_1363_fdr	34	38	43	25	21	23	23	35	25	21
GGGGGGCAGTCTGAGC	ref_1363_fdr	60	36	67	44	32	47	42	57	32	35
AGGTGATGTGACAGTC	ref_1363_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCCGTGTTACCAG	ref_461_fdr	35	23	41	23	23	42	24	37	28	25
GTATACCATTATATCC	ref_461_fdr	13	9	17	19	11	9	9	9	13	9
CATAAGTACTCTCGGT	ref_461_fdr	4	1	11	8	11	11	7	11	6	3
CTATCAACCTTGCCTA	ref_461_fdr	6	13	13	6	9	12	13	9	7	6
ATTTGACGTACCCAAG	ref_461_fdr	35	22	49	30	37	35	26	49	42	33
TCGTTTAGGTGCTTTT	ref_461_fdr	16	7	19	13	5	5	5	15	5	12
CAGAAGTTCCGTGGCC	ref_461_fdr	73	59	109	71	66	62	43	76	59	70
GCTAATGGTTGGGCGC	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
ATACAGTTATGGGGGA	ref_461_fdr	45	34	48	52	18	37	41	40	25	56
GTCTGGCTGTAACACG	ref_461_fdr	25	16	27	22	19	20	25	24	16	35
GGCGCCCCTAGGTTGT	ref_461_fdr	97	59	96	76	63	90	71	89	64	71
TTCTTCACAGAGAACG	ref_461_fdr	35	24	48	62	31	42	39	29	20	38
ACTTCCTGCACCATGG	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
GTTATATACCAGATAC	ref_461_fdr	8	6	11	11	6	9	6	7	7	14
AATAGAAACTTCACAC	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
CGAGTACGGGTCGAGA	ref_461_fdr	69	53	103	92	74	91	60	76	74	81
GCGGTGAATCTATTGG	ref_461_fdr	222	172	309	243	163	194	196	232	193	222
ATTTCCGGAGATCTTC	ref_461_fdr	9	8	13	8	5	9	5	11	3	13
AATAAGACCAGGTATT	ref_461_fdr	3	12	6	2	8	2	7	1	2	4
AGAGTAGGCCCCCCAA	ref_461_fdr	34	33	76	45	35	50	32	51	29	43
TCGCGACCTGACTTTT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
CTTCATCGTAGCTTTA	ref_461_fdr	141	119	157	130	127	155	100	129	119	141
ATATTGTCTTAGCCTT	ref_461_fdr	9	0	2	1	4	0	7	9	1	0
CACGCATAGAGGTACA	ref_461_fdr	4	7	11	10	7	3	6	8	5	3
GCCATGTAACAAATAG	ref_461_fdr	3	1	3	6	5	6	0	1	1	5
AAGCTTTGCGTGATGT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
AGATACCCGGGGAGCT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
GATTTTTTCGGGCCTG	ref_461_fdr	48	30	46	28	26	40	27	34	34	39
ATAAGGACAGAGGTTA	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TTCATGATATCGCGTT	ref_461_fdr	51	42	66	37	50	46	39	41	42	50
GATTTCACTGGCGATT	ref_461_fdr	24	15	15	27	10	29	18	24	10	14
CCCGAGGACTCACCGC	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TTAATGAAAGAGTTAT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
GTAAGAAGTACTTATC	ref_461_fdr	27	19	21	21	13	23	17	9	7	13
CTAGGTGCCCTTCGTG	ref_461_fdr	79	66	122	103	72	88	56	102	100	66
GGCACTTCAATCTGTC	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TCGGGGGATATATTGC	ref_461_fdr	41	26	45	48	31	50	27	43	42	32
ACGTCCTTTTAGAGCG	ref_461_fdr	7	13	13	9	6	5	10	12	10	9
GCTCAGAATAGAACTT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
CGTGCACTCGTACTTC	ref_461_fdr	28	16	28	31	19	34	23	19	31	25
TACTTTCTGAGCACTT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
CGCTACGTATTCACAA	ref_461_fdr	9	1	14	8	5	9	15	8	4	4
CCATCGATTAGAACTT	ref_461_fdr	1	8	2	0	3	1	5	2	7	0
TTGCGTCACGTGTACT	ref_461_fdr	67	47	93	78	43	56	50	69	53	78
TAAACTTTAGACCAGT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TGATCCTTGTGTCTAG	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTTATTAGCACCC	ref_461_fdr	16	11	21	13	12	16	16	21	17	15
GGCTGGCATTTTGCTT	ref_461_fdr	16	4	14	7	10	10	7	11	8	8
GCTAGCTTCCGTTGCT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TGGTCTTTTCAATAAA	ref_461_fdr	62	58	80	80	63	64	53	67	53	77
TTTATCAGGGTTCGGA	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
CATACTGTCCGAAAGG	ref_461_fdr	38	37	67	58	48	55	43	41	44	47
TCTATCGTGACTCGCT	ref_461_fdr	35	30	60	38	30	27	38	33	25	32
ATTTCTATAACACATA	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
GTTATTTTAAACGGGG	ref_461_fdr	17	17	27	24	19	20	26	20	16	12
ATGTCCGTTCTGCATC	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
AATGACAAGGCACTTT	ref_461_fdr	68	61	91	100	59	77	62	91	65	76
CGAAGTTCAGAACCGT	ref_461_fdr	22	13	17	20	21	19	11	25	23	11
TGTCCAACGGCTCATA	ref_461_fdr	2	4	0	1	1	3	0	1	2	4
GATATTTTATGGAAGG	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
AGAATTATCTTGTATG	ref_461_fdr	141	84	144	123	87	117	83	125	78	114
AGGTTTTAAACTGGGT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TCGCCGTGTAGCTCGA	ref_461_fdr	33	9	23	28	19	22	15	17	12	19
CAATTGACTGTCAGGA	ref_461_fdr	50	35	58	53	28	51	32	45	33	39
TTATATATTGTTAAGG	ref_461_fdr	10	3	13	11	7	11	11	4	10	7
TGCGTTGTTTGGGCAA	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TCAGGTCACATTTCGG	ref_461_fdr	44	53	59	52	35	41	35	52	51	46
TGCTTCTGTAAGGTGT	ref_461_fdr	43	36	44	30	38	51	42	41	33	36
TAAGAATTAAGTTGGG	ref_461_fdr	20	16	20	27	16	24	16	19	13	17
CGTGCCTTGTTTACGG	ref_461_fdr	12	17	19	13	17	17	16	12	18	20
CCGTGCGATCGTTCTT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
CCAGGCTGTTTTACTT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
CCAGTTAGTCTAGAAC	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
ATCGCTTTCTGCCCAG	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TTAATGGTCTTGACCC	ref_461_fdr	49	29	49	51	22	55	38	44	25	49
CGATGGGCTTCCATCG	ref_461_fdr	24	9	26	22	12	21	13	16	19	16
AATTCTGTTATACCGC	ref_461_fdr	8	3	8	7	7	8	4	9	7	5
TGGCCCGAGCCGGCGG	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TATACTCGTAGCTGTG	ref_461_fdr	25	22	26	21	19	18	14	29	32	18
TATCGATCCCGGACGA	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTGTAGATCCGCC	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
TCAACAATGGCCGCTC	ref_461_fdr	1	2	1	6	2	3	3	3	0	3
AATTTGTTGTAGCCGT	ref_461_fdr	41	37	42	46	32	45	32	54	42	40
ACCCTGGGTACACTCT	ref_461_fdr	53	44	30	36	39	36	55	33	59	26
TTTTTTGGGTAGGGAT	ref_461_fdr	3	3	9	7	3	6	8	4	8	7
TGGCTCCGCTGGCGGT	ref_461_fdr	10	10	18	14	13	15	10	14	10	3
GTAAGTGCAACAGACG	ref_461_fdr	84	82	89	58	71	53	43	81	68	70
TTCACCTGCTCTTTGT	ref_461_fdr	39	34	56	40	40	32	31	32	27	43
GCGCCCGTTTTTTTTT	ref_461_fdr	16	4	14	22	10	11	3	9	7	13
CCACGGTTAAATATAA	ref_461_fdr	43	40	41	51	33	28	38	42	41	42
TATGCATAACTTCTAA	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
AGGGCCCTTAGGAGCG	ref_461_fdr	92	63	117	97	48	93	63	52	71	73
CTAAGCAATAGCCTCT	ref_461_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGCTTCAGCACTC	ref_176_missing	0	0	0	0	0	0	0	0	0	0
CTTCCTCTGAGTGCCC	ref_176_missing	0	0	0	0	0	0	0	0	0	0
AGTCTGTTATGTCTAC	ref_176_missing	0	0	0	0	0	0	0	0	0	0
TTTAGATTTTCGCGCC	ref_176_missing	56	78	80	67	62	55	70	54	88	46
CAAAGTCTGTTGCACT	ref_176_missing	26	49	27	35	45	32	47	16	64	29
GTTGGTATTACATACT	ref_176_missing	19	57	35	31	52	31	36	20	41	22
TACCGGTGGAGCTTCC	ref_176_missing	22	18	17	21	25	24	26	20	21	15
ACACAGGGCTTTTTTC	ref_176_missing	0	0	0	0	0	0	0	0	0	0
AGCTCTGCCCCTTGAC	ref_176_missing	39	57	37	43	58	22	67	27	69	19
TTCGGTTGGGCGACTT	ref_176_missing	4	8	9	3	5	7	8	5	5	4
GAAACCTGATTGCTAT	ref_176_missing	0	0	0	0	0	0	0	0	0	0
TCCCGTCGACTTGTCG	ref_176_missing	0	0	0	0	0	0	0	0	0	0
AATTTTACCGCTTTGC	ref_176_missing	0	0	0	0	0	0	0	0	0	0
TGACCAAAGAGGCTAG	ref_176_missing	5	2	1	4	5	1	4	0	2	1
AGTAACGATGTCCCCA	ref_176_missing	7	4	12	4	6	4	7	8	6	5
AATTGCGACCAGGCCC	ref_176_missing	14	10	15	9	18	18	10	20	25	11
ATCTGACATGAGTGCA	ref_176_missing	0	0	0	0	1	0	0	0	0	0
TAAACATTCGGCAGTA	ref_176_missing	1	8	14	10	12	11	12	8	11	16
CTGTCGTCGCGTGAGG	ref_176_missing	14	13	15	10	20	19	23	17	21	11
TTCTATGTGTGACTCT	ref_176_missing	0	0	0	0	0	0	0	0	0	0
TGAGTGCCTCATGGTG	ref_176_missing	12	6	7	12	2	6	12	7	6	4
GCCGTGGCGGCTTGAG	ref_176_missing	0	0	0	0	0	0	0	0	0	0
GGGCGTAAGAGTGACA	ref_176_missing	29	25	17	33	22	20	31	15	27	14
ACTCGACCCTTTGTTT	ref_176_missing	87	87	99	70	66	59	74	67	94	73
TCATCAAGTAAGCATC	ref_176_missing	23	21	21	15	10	20	23	7	10	10
CGTTTGTATGTGCTTG	ref_176_missing	0	0	0	0	0	0	0	0	0	0
ACACGGGGCTCCCGTG	ref_176_missing	4	16	8	13	9	11	10	8	7	8
TTCACATTGTTACACC	ref_176_missing	13	19	19	27	13	10	16	11	19	14
TTAGCTCGGGTTTTAT	ref_176_missing	10	10	5	3	6	6	6	5	5	5
GAAGTCCATCACTCGT	ref_176_missing	114	133	161	123	125	108	151	97	151	81
TCGGTTTTTTTTGGTT	ref_176_missing	17	11	8	16	14	16	16	12	15	14
ACCAGTAATAAAGTGT	ref_176_missing	11	8	2	9	12	8	16	5	18	6
TTCTTAACCTATGGTC	ref_176_missing	0	0	0	0	0	0	0	0	0	0
CGACGAGCATAAGAAC	ref_176_missing	0	0	0	1	5	0	1	0	0	2
TAGTCCGTTCGGACTA	ref_176_missing	0	0	0	0	0	0	0	0	0	0
CTTCTGTACAGGAATC	ref_176_missing	16	15	32	21	31	17	25	26	27	17
TCGCAATTTGACAGAG	ref_176_missing	0	0	0	0	0	0	0	0	0	0
GTCGCCAGTTCTTCCG	ref_176_missing	10	17	22	13	12	18	12	11	23	17
TTCATACGCCAGGGTC	ref_176_missing	0	5	3	1	5	4	5	2	6	2
ATTGATTGGCATTTTT	ref_176_missing	48	48	45	65	42	44	44	41	41	45
AGTTTAATGATGTAAT	ref_176_missing	0	0	0	0	3	0	2	0	0	0
CCGTTGCCTGGGTCAT	ref_176_missing	19	25	23	19	23	27	33	17	36	19
TGTGATTACTTCATGC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
CCGACGCTGCTGGTGG	alt_5289_missing	22	20	20	16	32	16	29	22	27	18
CGCCGTGGGTTCGCAA	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
CCTAAAATCCCGCGCC	alt_5289_missing	30	13	18	24	34	18	21	23	24	18
CGCCTCATGCGTTTAC	alt_5289_missing	216	215	287	191	197	226	204	240	238	220
ATGATTTGTGGTTTAT	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TTCGTTACTCCCGGAT	ref_5289_missing	25	36	28	34	36	23	37	38	46	29
GAAATCTTGTCGCGAG	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TGCGTTTGGGCGTGTT	alt_5289_missing	23	36	32	18	26	18	33	33	18	32
CCAGCTGAAACTGTCT	alt_5289_missing	22	28	29	19	20	27	24	25	24	17
GTGCCCACAAACATAT	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GCAGATAATTTGGATG	alt_5289_missing	27	22	38	21	22	21	20	20	22	33
AGTGTTCGTTTTGCGT	alt_5289_missing	28	24	30	18	22	14	15	16	27	23
TCTTCCCTTGTTCGAG	alt_5289_missing	83	62	90	78	71	67	65	77	60	76
TGCCCTGGTTTGGGGT	ref_5289_missing	249	207	308	225	170	250	210	177	184	197
TATCTCCCGGATACTT	alt_5289_missing	92	71	95	72	72	78	66	84	63	66
CCCGTTGTACGCAGTC	alt_5289_missing	10	13	15	5	9	13	6	6	8	8
GGTTCAGGGACACCCA	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
AAAAGCGTCTCGTGGT	alt_5289_missing	15	9	21	15	9	12	14	17	10	14
CTTTAACTCCACAAGC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GACATCGGTCCACCTG	alt_5289_missing	164	175	180	174	169	167	177	176	158	140
TACCGACCGGCCGCTG	alt_5289_missing	13	12	27	15	15	14	17	19	17	16
AACTCCTTAAGGTACC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GGTCCGCTCCATAACA	alt_5289_missing	23	30	50	37	27	30	18	37	37	33
TTTTATAAACCGAATA	alt_5289_missing	9	12	16	18	10	6	13	15	9	15
AATTTGAAATATAGTG	alt_5289_missing	19	10	23	24	17	17	13	21	13	13
TACAACCGGCTTGTTC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TACAACTCCAAGCTTG	ref_5289_missing	3	8	4	6	7	1	6	2	7	4
GAGATAGGTCTATCAG	alt_5289_missing	8	0	13	8	0	8	4	9	7	9
TGGCGTACATTGGTCT	alt_5289_missing	68	55	108	90	51	74	46	75	66	64
ATCGTATGATTTTTTT	alt_5289_missing	3	2	4	4	1	3	0	2	2	3
CTCTATTACGCTTCTC	alt_5289_missing	16	19	25	14	16	22	18	12	17	11
AAGCCAATATAGGCGT	alt_5289_missing	59	39	76	65	71	66	65	57	51	65
GCACCAAGTCGCCCTT	ref_5289_missing	213	158	274	249	147	218	180	224	162	180
TAATCAGATGCGCTGG	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GTAGAAAGGGCCCGGT	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
CCTTATCGCTAGCTGC	alt_5289_missing	21	12	24	23	13	25	19	21	24	24
CGAAGAAGACTCTGCA	alt_5289_missing	58	51	60	61	51	57	42	46	61	43
AGCCCTCGAGCATATA	alt_5289_missing	14	17	27	14	18	22	12	13	16	20
GACACGTAGAATTACT	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TCCAGTCCCCGAGGTT	alt_5289_missing	14	6	6	9	11	8	4	26	12	8
GACCCTGCTTCTTAAT	ref_5289_missing	1069	824	1352	1106	794	1070	791	985	905	982
CTCGAGCTCAATCGGG	alt_5289_missing	23	25	31	31	16	40	22	39	28	36
CAGGTAGCTCCTGAGA	alt_5289_missing	68	51	75	59	62	48	31	68	46	47
CTGTCCACTTTAAGTA	alt_5289_missing	41	46	41	46	37	39	44	37	41	29
TTCAGTTGTTAGTCAC	alt_5289_missing	62	80	63	55	54	64	60	54	63	47
TTGTACACGTTTGCTC	alt_5289_missing	34	30	19	24	31	24	32	20	22	17
TTTTCGCGCCGTTCCG	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TGGAGTAGCCAGTTTG	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GTTCTTCGCGAATCAT	alt_5289_missing	32	16	32	29	21	22	8	33	21	23
ACTGTGGGCGTCTGTC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GGTGTGTCTGCCGTTT	alt_5289_missing	28	28	48	40	27	22	25	35	29	25
TGTAGTCTATTGGTCT	alt_5289_missing	49	54	44	50	51	35	52	36	43	37
ACCTCGCAAGTTTTTG	alt_5289_missing	5	19	13	5	6	7	8	5	14	7
CCTTAACTCGAAAAGT	alt_5289_missing	32	18	24	24	21	25	29	29	24	14
AATCGAAGTAACGCTA	alt_5289_missing	88	62	119	79	86	85	58	89	60	67
TGTATTTGAGTCGCCA	ref_5289_missing	80	50	79	69	56	62	59	68	83	53
TATTCGATTCCGTTGG	alt_5289_missing	66	41	55	42	48	40	36	39	36	53
GTGTTAATCTCTAAGG	alt_5289_missing	96	82	102	82	78	93	72	82	61	42
AGTCACTGTTAGGGGG	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GGATTTCTGCTATGGT	alt_5289_missing	23	33	45	32	28	35	24	33	28	31
GGTTATACCATCTACT	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TGATATGTTGTTTCTC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TTTTGCGTACTCAGTT	alt_5289_missing	27	17	29	28	28	26	27	27	20	18
TAAGACCCCTCTTCAG	alt_5289_missing	96	68	110	88	77	96	64	94	70	68
TCTCAGGCATCCTTGC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TATAGTAGAGTATTGG	alt_5289_missing	19	15	20	23	10	18	12	10	13	19
ACCAAAAGTATGTGTC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TGGCACAGATAGGTTG	ref_5289_missing	123	103	161	132	67	107	108	79	90	102
ATGTAGGATGTATCAA	alt_5289_missing	14	16	19	26	15	17	29	25	24	20
TTTGCCCGTTCCCCTG	alt_5289_missing	19	10	18	32	13	24	14	11	23	17
TCAAACGGGGCTCACG	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
CAATACTTCTATCTAT	alt_5289_missing	68	61	89	84	52	77	70	85	63	63
ATCCATTTCTATTTTC	alt_5289_missing	64	43	75	58	46	57	47	57	29	47
GACNCTGCTTCTTAAT	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GCCTATATATTCTGAT	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
TCAGTGCTCACTAACC	alt_5289_missing	0	0	0	0	0	0	0	0	0	0
GGCCCTGCTTCTTAAT	alt_5289_missing	0	1	0	0	0	0	0	0	0	0
TTCCTGAGGTCGCGAC	alt_5289_missing	11	15	23	23	8	14	13	11	11	7
AGTCTCTAGCAATAGT	alt_5289_missing	23	23	44	30	35	24	36	28	34	33
AGGCTTCATATATTTA	alt_5289_missing	48	37	41	50	35	37	35	34	39	50
TGCGCATTGGTCCGCA	alt_5289_missing	38	19	21	26	24	18	31	16	18	15
CGTCTCGTATTTACCT	alt_5289_missing	52	34	68	54	27	40	39	35	49	38
AGTAGCTTCGGGTATT	alt_5289_missing	399	268	451	409	333	335	346	392	327	393
ATTCGGTGTCTTCCTC	alt_1450_missing	18	14	19	18	11	14	13	15	13	16
TCGTTCGACCTACTCC	alt_1450_missing	2	0	4	2	1	1	0	3	2	0
GTCTATGAACGTCGCT	alt_1450_missing	29	48	38	48	40	40	41	38	28	34
TTGCATCTTGTGTTTT	alt_1450_missing	0	0	0	0	0	0	0	0	0	0
CCCCCAAACAATCGGA	alt_1450_missing	51	39	78	60	48	44	54	54	56	46
GCTTGGCGGTGTCTTT	alt_5572_reverse	13	15	23	25	15	20	10	14	19	9
GGCACATAAGTCCGCA	alt_5572_reverse	33	30	44	33	20	15	16	29	19	34
GGGGATGTTACCGCGA	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
GTGGAGTGTACTGCAC	alt_5572_reverse	12	5	10	12	9	11	9	4	20	6
TTTAGGTTTTATCTCC	alt_5572_reverse	24	19	36	30	26	22	21	22	22	25
GTTTTCATCACCTAAG	alt_5572_reverse	50	26	43	36	40	36	34	35	41	34
GCACGTCACTTAGAGA	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
TTAGTGCGCGCCTAGT	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTCCTTGGTGCGT	alt_5572_reverse	41	32	41	36	23	44	38	37	31	33
GTTCATATTTGAGTGT	alt_5572_reverse	39	33	53	37	32	34	19	32	37	32
GTGGGGATGGATATTC	alt_5572_reverse	50	38	50	40	35	52	29	40	37	47
CTAACAGTCCCTTTCT	alt_5572_reverse	103	77	109	104	53	109	89	112	81	117
ATATTTCATATGATTA	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
GAGCATTATAGCTATG	alt_5572_reverse	18	13	19	8	10	21	21	20	18	14
CGATCACTCTAGTGAA	alt_5572_reverse	39	30	52	47	43	34	48	54	37	38
ATGCTAATCTATGTGT	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
CAACCGATCTTGTGAC	alt_5572_reverse	60	63	65	71	53	45	66	52	80	59
TTTGCGTACAATGCTT	alt_5572_reverse	100	109	131	113	94	108	97	92	102	94
CGGTCAATTGTGCCTC	alt_5572_reverse	29	71	50	49	77	38	52	34	65	33
CAACGTTCGTGGCGAT	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
TAGTAAGTACCTTCCG	alt_5572_reverse	18	11	15	25	16	29	14	13	19	11
GAATCGTTTAAAGATC	alt_5572_reverse	24	21	33	33	22	25	21	27	22	25
ATTAGGACTGCTAGGA	alt_5572_reverse	7	5	15	14	6	12	8	22	12	12
ATTTCTTTTGTATCAC	alt_5572_reverse	269	194	311	238	215	239	205	231	200	248
CTATTGCACTCGTCGT	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
TAAATCTGATTCTTCG	alt_5572_reverse	41	28	46	44	23	48	36	47	21	42
TTATGTTCCTTGTGCC	alt_5572_reverse	20	20	21	36	28	24	16	16	23	14
AAGCATACATCTGTCA	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
ATGCCAGTGCCGATGA	alt_5572_reverse	12	8	16	13	7	10	6	4	5	5
AGTACGGGTTTGCACG	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
AATTACTTTCATCGTA	alt_5572_reverse	11	11	19	8	8	14	10	10	10	10
TCGATAGGATTCGGTT	alt_5572_reverse	46	48	57	42	61	47	54	50	65	44
TGCGTTATCAATCGCC	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
AACTTGAACTTTAGGC	alt_5572_reverse	26	18	19	10	17	19	16	15	17	19
ATCTTACGTGTCCCGA	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
CTGGGTCGCGTTTTCG	alt_5572_reverse	33	19	45	38	30	39	39	45	19	31
ACTACACAGCATACGG	alt_5572_reverse	36	44	64	55	45	46	62	52	37	50
GCTCCGTTTTGGGCCT	alt_5572_reverse	29	21	25	22	18	21	16	17	21	19
GCTAGGCTAGGAACCA	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
CAGATTTGTCTGTTTG	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
TTTCCAGCTCGTTCCC	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
TGCTATTTGTCAGACC	alt_5572_reverse	7	4	6	7	5	11	5	6	5	8
TAGATCTGCGAGCCTT	alt_5572_reverse	0	0	0	0	0	0	0	0	0	0
ATGCTTTCCGGTCGCA	alt_5572_reverse	14	3	6	6	7	7	6	4	3	2
GCTCGTGTGCTGGGCA	alt_5572_reverse	39	22	39	19	12	26	23	23	20	19
GTTTTATATTTGACCC	ref_959_fdr	22	27	20	19	18	26	17	21	22	28
TATCCCGAGGACCCCG	ref_959_fdr	181	92	210	195	98	183	93	167	96	163
GAGTGCTGTGGGCCCA	ref_959_fdr	60	35	73	62	34	65	34	53	38	53
CAAACTCGCCCCGAGA	ref_959_fdr	25	18	38	18	17	26	12	24	20	28
CCTGACGCTATCCGGT	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
ATGGTGGTTCGCCAAT	ref_959_fdr	36	25	36	45	23	31	12	29	22	24
ATCTACTTGTCTTCGA	ref_959_fdr	10	15	7	10	9	12	13	15	8	16
CCACTAATCAGCGCGT	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
GCAAAATTATGGAGCA	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
GCAGGACCTAATCTGT	ref_959_fdr	98	57	106	111	66	81	59	93	63	79
CATAATCCCCACCTTG	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
ACCTGATATGTGGTCA	ref_959_fdr	44	43	53	51	26	49	36	44	47	44
TAATCCAGCTTGAAGC	ref_959_fdr	76	38	88	93	55	85	49	69	52	73
CCGTCTATGTTTAACC	ref_959_fdr	31	15	27	41	10	28	18	27	11	23
CACAGTACAGGAACCG	ref_959_fdr	19	15	18	11	10	10	14	13	14	11
CGACCATCTGCCCATC	ref_959_fdr	54	75	67	42	86	52	89	54	67	39
GTTCGTTTCCATTGGT	ref_959_fdr	34	33	35	29	23	44	25	40	16	36
ACGCTTTTTAACGTAG	ref_959_fdr	45	21	61	49	24	38	20	47	41	43
TTACGCTCTTGCGCCC	ref_959_fdr	113	62	103	95	54	84	47	75	58	78
CGTAGCGTCTGTGTGC	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
CTAGACCCCGACAGGT	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
TACGGTTGAAGACAAT	ref_959_fdr	217	135	272	209	100	174	135	191	163	171
TATAACGTCCACAACG	ref_959_fdr	335	286	407	325	251	303	329	321	278	300
GGGCTTAGAGACTTGG	ref_959_fdr	112	98	142	108	94	102	130	128	97	107
CGTCCACTGGGCTGGT	ref_959_fdr	172	139	242	212	144	172	166	174	140	172
TTTAAGTTCTGCAGTG	ref_959_fdr	33	13	26	26	12	29	33	30	13	34
GCCTACCATTCCATGG	ref_959_fdr	88	52	109	104	62	91	67	77	67	76
TGTATGTTTATATCGA	ref_959_fdr	50	16	75	42	26	52	25	45	26	35
ATGCGGATTGTGTTAG	ref_959_fdr	93	61	124	83	66	99	72	106	79	92
GTTCTCGGTTAACACG	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
AGGGGACGGATTAACC	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
TCTTCTTCTGTTGATT	ref_959_fdr	76	76	100	80	78	62	48	48	60	55
GATTGTGTTTCGGTGC	ref_959_fdr	10	5	12	4	13	8	4	3	7	3
TGAACTGGCTACTTAG	ref_959_fdr	249	124	312	231	123	219	138	176	166	191
TGAGGATCTTCTCGGA	ref_959_fdr	23	9	30	39	18	25	16	26	22	20
GGGCACTGCCAGTGTC	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
TTCGCCGTCATTTGAT	ref_959_fdr	63	64	82	64	68	50	62	45	74	50
GGTGGAGCATGCTCTC	ref_959_fdr	21	4	28	12	14	20	12	17	13	14
CCGGGCTTCGTTCCTC	ref_959_fdr	1	8	1	2	3	2	10	3	8	2
CTCGACAATGTCTAGA	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
TCTCTTAACGTAATAC	ref_959_fdr	77	51	107	85	56	61	47	81	78	57
CCTGCATCATTCTATA	ref_959_fdr	199	262	318	272	190	210	218	236	235	182
TGGCTGCGGTCGTTCG	ref_959_fdr	79	41	104	87	40	75	42	87	44	54
TACATGTATTTGCTTC	ref_959_fdr	383	217	443	380	254	347	253	357	225	348
CTTATGTCGTATATCA	ref_959_fdr	124	43	126	73	61	104	64	83	73	103
GGCCTTAGCTGACTCC	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
CGCGCAAAATCCCCCG	ref_959_fdr	73	44	111	92	54	59	61	87	53	71
AGGAAACCGAGGTCCA	ref_959_fdr	34	12	18	35	16	25	20	21	8	26
CGTTCTGGTTTATGCT	ref_959_fdr	51	27	41	41	30	46	29	37	25	40
GTGCCCCGGGCAGAGG	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
TGGACTTCTCGGATAC	ref_959_fdr	67	25	92	90	36	79	68	75	47	58
CGTCCTCGATAAGCAA	ref_959_fdr	49	38	72	54	32	50	29	52	34	48
TCGGGGCGGCTCTCAT	ref_959_fdr	100	67	135	100	72	91	91	125	58	101
TAAGTTGTTTATCATA	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
AAGAGTCTTAAAACCC	ref_959_fdr	0	0	0	0	0	0	0	0	0	0
GCCTAATAGTACATTC	ref_959_fdr	54	55	58	55	45	47	39	33	45	51
GGACTCCCGACGTACA	ref_959_fdr	39	47	49	53	28	41	29	44	32	28
TGCCCTCCAATAACGC	alt_6040_new	0	0	0	0	0	0	0	0	0	0
CCTGTACTTAAATGCG	alt_6040_new	29	32	33	30	29	23	45	27	38	21
GTTGTCCTCAAAAGGT	alt_6040_new	0	0	0	0	0	0	0	0	0	0
TTGATGCATGTAGATG	alt_6040_new	73	121	81	69	79	62	116	47	121	64
GAGGATTCCTAAGCAT	alt_6040_new	40	49	50	59	53	50	52	45	35	44
CCTTTAAGGTCGCTTG	alt_6040_new	16	9	9	8	18	6	12	4	15	11
TCATACTAGGTCCGCT	alt_6040_new	59	47	66	57	55	47	56	50	60	41
TAGGGACTTAATTTCT	alt_6040_new	35	32	26	23	31	34	32	16	33	22
AGTTGGCTTTGGGGTG	alt_6040_new	0	0	0	0	0	0	0	0	0	0
TCATTGCGCACGCAAT	alt_6040_new	0	0	0	0	0	0	0	0	0	0
CTTCGCTCTTGGTTCC	alt_6040_new	0	0	0	0	0	0	0	0	0	0
AGTCATGTCCTTGGTC	alt_6040_new	0	0	0	0	0	0	0	0	0	0
AAGGAGTCTTTGCCAG	alt_6040_new	1	0	0	1	4	0	0	2	1	2
ACGCTCGAATTTGTCT	alt_6040_new	0	0	0	0	0	0	0	0	0	0
CATGAATTATGATAAT	alt_6040_new	0	0	0	0	0	0	0	0	0	0
TCTGCAGCCCTGGCTT	alt_6040_new	0	0	0	0	0	0	0	0	0	0
GGGGTCCGGATTATTT	alt_6040_new	21	24	25	19	27	23	23	22	27	20
GGCCGCTCTAGGTGCG	alt_6040_new	10	15	17	14	10	7	9	12	16	10
GCCTCCGCCGGCGTCA	alt_6040_new	15	13	13	12	20	14	26	22	18	11
GCATCAGGCCTAGTGG	alt_6040_new	14	14	16	22	12	10	24	22	12	19
CAAGCTGTCCGCCAGG	alt_6040_new	26	21	37	15	32	30	18	17	35	29
TACTCCAAACTCTGAC	alt_6040_new	4	17	10	7	18	5	14	5	19	11
ATTTCTGGAGAAACAA	alt_6040_new	0	0	0	0	0	0	0	0	0	0
ATTTTTGGCTCGGGTA	alt_6040_new	0	0	0	0	0	0	0	0	0	0
TAAGCCATCAGCCAAG	alt_6040_new	107	200	125	148	195	113	170	89	192	110
GTGAGATCTTCTGACG	alt_6040_new	73	63	48	40	63	44	59	56	59	48
TTTGGCCACGGATTTC	alt_6040_new	20	12	15	11	28	13	28	17	14	25
ATAGAGATTGTTTTTC	alt_6040_new	28	25	39	27	13	22	35	23	26	16
ATGCGAGTTGTATGGT	alt_6040_new	0	0	0	0	0	0	0	0	0	0
ATTACCGGGATCTAGT	alt_6040_new	22	20	36	26	23	18	20	22	27	21
TATAAACCAATAGTGC	alt_6040_new	14	11	22	19	18	12	30	15	15	6
AACGTTTCTCATTGGG	alt_6040_new	0	0	0	0	0	0	0	0	0	0
TCCTCAGTGCTCTTTA	alt_6040_new	16	24	18	9	16	12	12	5	6	11
ACATGCGCAGGTTATT	alt_6040_new	65	79	70	58	70	76	69	61	87	51
TTGTTAGCTGGGATAA	alt_6040_new	75	86	77	67	57	80	91	50	96	71
AGCTTCATATTTCTAA	alt_6040_new	13	7	15	18	16	9	9	9	9	9
TCCGTTTCGATAACCG	alt_6040_new	0	0	0	0	0	0	0	0	0	0
GAACTCTTTTTTGGAT	alt_6040_new	24	37	32	30	30	24	31	24	33	17
ATTTTAATTGCTTGAC	alt_6040_new	140	153	188	166	139	160	149	119	175	116
CAACCGTTCGGTGAGC	alt_6040_new	0	0	0	0	0	0	0	0	0	0
ATCCTGCCCGTTCATT	alt_6040_new	33	34	45	31	46	30	31	19	33	25
CTTGACATGCATCTCT	alt_6040_new	14	22	14	10	20	8	22	19	13	6
TTAGTGCTTTTGCTAA	alt_6040_new	6	15	6	3	4	6	15	6	6	2
GGCTCCGCTAACAGGC	alt_6040_new	41	42	45	35	36	43	43	26	68	35
AAAGGCTAGGCCCACA	alt_6040_new	0	0	0	0	0	0	0	0	0	0
TGCTCGAAGCGCAGAC	alt_6040_new	17	6	5	11	15	6	7	5	12	8
TCTAACGTGTCGTTAC	alt_6040_new	0	0	2	0	1	0	0	0	1	0
TGCATCATAGCTAAGT	alt_6040_new	0	0	0	0	0	0	0	0	0	0
GCTGGTATAACTTACC	alt_6040_new	0	0	0	0	0	0	0	0	0	0
CATTGTAATGTTTGCT	alt_2882_missing	0	1	0	1	3	0	1	0	2	0
GGTCTACCTGCACTCT	alt_2882_missing	7	13	10	9	16	6	15	12	20	9
TTTGTTCGTACGAAAT	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
CTCCATCACCTGTAGA	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
GGATGACCGCCACTCC	alt_2882_missing	2	4	0	0	0	0	2	0	2	2
TTCTGGGCGTCACCAC	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
TGAGCTCATTTGTTCG	alt_2882_missing	7	8	5	3	7	15	8	6	7	7
CAAGTCTAGATGTTGA	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
AGGTGGTCAGAGTCGT	alt_2882_missing	14	17	21	14	15	11	18	6	11	16
GATGTCCGGTGTGTTT	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
TTAAATGAATTCATGG	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
AGTCGCATCATGGCTT	alt_2882_missing	4	10	12	7	14	12	12	8	11	7
GCTTTGCCTATAGTAC	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
TTAAAATGAGCGGTCT	alt_2882_missing	29	26	30	19	29	12	33	21	33	13
CACGCTTGTTTGGCTG	alt_2882_missing	7	13	7	7	19	7	6	3	13	7
ACGAACATAATAAAGT	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
GGAGTTAACCGTCCTC	alt_2882_missing	3	5	2	8	5	4	11	8	6	6
GGTTTGCAGGCACCTT	alt_2882_missing	24	27	17	23	28	26	24	13	42	22
AGCAACATCCTTCATG	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
TGTGGCCTGTTGGCGT	alt_2882_missing	8	14	8	7	9	8	18	3	10	12
GAGTATCGCTACCGCG	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
CTCTGGTATTCCATCC	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
ATCATCAGAGATTATC	alt_2882_missing	87	69	89	51	77	81	85	62	77	79
CACTATGTATGCGTAT	alt_2882_missing	16	25	26	7	19	13	32	10	24	12
TGGGCTGACTTGCTTA	alt_2882_missing	1	6	6	6	10	11	8	1	5	4
GTAGTCCTTGGTTAGG	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
GAAGGGGGCATTTCTC	alt_2882_missing	3	2	1	0	2	4	4	2	0	0
GTTAAAGTGAAAGCAG	alt_2882_missing	26	18	29	26	16	20	13	17	14	19
GCCGTTGGATATAGTG	alt_2882_missing	5	13	8	11	17	11	16	13	23	8
ATCTTGTTATTCGCCC	alt_2882_missing	28	41	32	38	34	27	35	21	39	22
TCTGCTTTAGGGACCC	alt_2882_missing	20	23	9	15	19	12	14	6	13	17
GCCTGTTATATGAGTT	alt_2882_missing	11	9	12	6	9	6	21	7	11	7
CGCACAGCGATCTCAT	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
TTGGGGCTCGCGTGTT	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
TGTAGTTACTCCTGAC	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
GGCCGTTCCGCTCACT	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
GGCCATCTGTGGTTGA	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
GTCGTCTTCTCTAGAA	alt_2882_missing	0	0	0	0	0	0	0	0	0	0
GTTTCAGACGATTTGG	alt_2882_missing	15	23	20	16	16	11	16	15	29	11
TCTTATTCAGCCCGAC	alt_5149_missing	0	0	0	0	0	0	0	0	0	0
GCATACCCCAAGGACC	alt_5149_missing	37	31	36	49	45	44	56	41	53	35
AGAAATAATTAGCTCT	alt_5149_missing	8	11	6	16	13	11	15	13	21	10
TTTCTCCTTTCTTTTT	alt_5149_missing	5	0	9	3	5	8	5	5	2	6
GCGCCCGTCCTAAAGA	alt_5149_missing	11	14	12	13	9	6	20	8	9	5
ATATCAACTCGGGAAT	alt_5149_missing	20	31	17	27	16	22	19	25	22	17
TGGCTCACATCTACAA	alt_5149_missing	62	61	87	96	66	70	76	70	69	55
GTAATCGGTCTTTCGT	alt_5149_missing	0	0	0	0	0	0	0	0	0	0
ATACATTGGCCCTCAT	alt_5149_missing	34	33	42	48	44	32	40	30	37	31
TTACTGTTCGGAAGCA	alt_5149_missing	0	0	0	0	0	0	0	0	0	0
AATTCTACTGAGTCGC	alt_5149_missing	18	18	26	25	21	24	20	36	18	21
AATGAGTCAGAGCGTA	alt_5149_missing	6	9	9	11	10	11	9	10	6	11
TTGCGGGTGCGCATAG	alt_5149_missing	18	26	33	33	46	34	30	35	26	22
GTAGGGTACCCCTGGC	alt_5149_missing	0	0	0	0	0	0	0	0	0	0
AGGCGAGCCAAATAGG	alt_5149_missing	63	56	78	60	73	61	57	62	63	53
CTGTAAGTCCCGCATA	alt_5149_missing	94	109	129	126	138	76	139	112	123	105
CTGGCAATGCGGGGGA	alt_5149_missing	47	21	36	41	40	36	32	39	33	37
GCTTATTCCGGTGGGG	alt_5149_missing	31	29	45	35	34	13	31	38	34	32
GACGCTAATGGGGGAT	alt_5149_missing	35	25	38	40	31	30	31	21	32	24
GGGTGGATGGTTTTTG	alt_5149_missing	19	17	14	14	22	10	19	17	20	18
TGTCTCGTGCCTTATC	alt_5149_missing	40	28	34	33	22	33	27	20	31	31
CGATCCTCCTATGACG	alt_5149_missing	61	47	75	58	53	45	45	48	50	51
GTGCAAGTTAGCATTT	alt_5149_missing	11	13	6	7	5	9	6	8	9	6
ATGCACAGGAAGGGCG	alt_5149_missing	0	0	0	0	0	0	0	0	0	0
GCGCGACACTATGCTC	alt_5149_missing	0	0	0	0	0	0	0	0	0	0
GTTCGGTCCTGTCGGC	ref_5114_fdr	0	0	0	0	0	0	0	0	0	0
TCACGTAATAGCCTCT	ref_5114_fdr	0	0	0	0	0	0	0	0	0	0
TCTATATGCTGGGTTG	ref_5114_fdr	367	181	379	367	169	308	194	304	187	285
TGCAATGCAAACGCAA	ref_5114_fdr	0	0	0	0	0	0	0	0	0	0
GCACTCAAGTTGTCTA	ref_5114_fdr	13	6	18	19	3	11	13	15	6	11
CGGGACCAAGATCTAG	ref_5114_fdr	23	5	32	30	12	21	16	27	10	26
AAGATTTTGCCTACGC	ref_5114_fdr	30	15	38	37	17	31	12	38	28	33
TTCTTTTAACCTTCCT	ref_5114_fdr	147	71	189	150	54	155	74	123	71	154
GCGCGCCTGTATTCTT	ref_5114_fdr	0	0	0	0	0	0	0	0	0	0
CTAAAAATCGTATATC	ref_5114_fdr	169	72	168	160	71	141	76	148	79	128
CGGGAGCACTACAACT	ref_5114_fdr	49	24	66	63	21	50	31	48	23	32
TTCCTGCGTTAAATCC	ref_5114_fdr	66	54	73	69	34	66	35	54	40	56
TCGCTAAGGCACGTTT	ref_5114_fdr	39	24	41	51	23	38	16	50	26	36
ATTGGTTTCCGTGTCC	ref_5114_fdr	106	51	134	89	36	68	58	93	67	70
CGAGCTTATTCCACAT	ref_5114_fdr	94	82	149	137	99	110	80	103	91	115
GACCATCCAGCCCCAT	ref_5114_fdr	15	31	19	27	35	17	32	15	17	14
AGGTTCCGACGACCCG	ref_5114_fdr	36	26	46	37	16	35	18	36	27	30
CTCATGGCACCTGTTC	ref_5114_fdr	14	19	32	18	9	14	14	24	7	14
TTACTGATAAAGCAAA	ref_5114_fdr	0	0	0	0	0	0	0	0	0	0
GACTCTTTTCTGTGCG	ref_5114_fdr	152	62	145	120	63	141	78	126	62	119
ACCATCAGCTATGCCC	ref_5114_fdr	0	0	0	0	0	0	0	0	0	0
TTCCTGTTCGCGTTCT	ref_5114_fdr	0	0	0	0	0	0	0	0	0	0
AGCTAGATTACGTGTG	ref_5114_fdr	111	70	142	102	55	93	50	117	47	93
CCTCCTCCACCGCTTG	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
GCAGTATTTTTAGGTG	alt_1363_fdr	53	44	54	59	53	34	48	52	67	38
TTAATCCCGTAAGCCA	alt_1363_fdr	1	2	1	0	1	2	3	1	0	0
GGAAATTTGCAATCTG	alt_1363_fdr	93	82	120	95	70	107	77	95	72	70
TTATAGTTCACCTTTG	alt_1363_fdr	32	30	47	39	37	34	28	32	24	27
AAACACTTTGTCTCTA	alt_1363_fdr	135	123	185	160	95	123	102	135	101	129
GTTGTTTCCATGTTAG	alt_1363_fdr	48	27	48	46	27	36	28	36	32	39
CCATGTCCCCTTGTCT	alt_1363_fdr	2	2	3	6	10	5	8	9	2	8
GTCCGGTCTCGCAGAC	alt_1363_fdr	9	10	13	9	8	14	11	9	10	5
AGGCATTTCTTCTGTT	alt_1363_fdr	159	105	244	167	118	144	118	153	122	144
GAAAATTGTCTAAATG	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
GGAAAATTCTTAGCCA	alt_1363_fdr	191	106	233	208	120	188	123	197	134	156
GCAATTAACGCTAGCA	alt_1363_fdr	37	35	49	41	38	45	40	40	48	52
ACAGTTACATGTGACG	alt_1363_fdr	19	11	24	24	25	18	19	20	17	17
CACGGCTTTTTATTTG	alt_1363_fdr	14	17	17	16	12	8	7	10	13	9
GTGGGCACGGAGTTTC	alt_1363_fdr	14	10	14	16	9	14	12	7	6	11
ATCTCATTTTTGTGTA	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
TGCGCTCTAGATGGCT	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
AGTCAGTGGGCTGCGG	alt_1363_fdr	88	70	105	123	53	94	74	110	60	86
GCCGTACCAGTATATG	alt_1363_fdr	262	158	331	291	197	281	172	276	214	258
GGTGCCGCTTCAGATG	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
GGACTTTACCTAGTGA	alt_1363_fdr	20	18	46	34	22	36	20	26	25	38
TGTATGTTTCCAGTTC	alt_1363_fdr	106	50	119	107	57	78	87	85	68	88
TCGTATGACCCGATCC	alt_1363_fdr	16	12	13	16	12	13	10	13	4	11
GTGGTTGACATACGTG	alt_1363_fdr	7	11	14	8	10	12	11	9	5	19
CTCTTTTCTTGTGCGG	alt_1363_fdr	7	5	3	13	4	3	3	14	2	7
GGGTAGGCTTTATCGT	alt_1363_fdr	87	62	74	83	59	94	48	72	47	82
GAATGGCCATCTTAGA	alt_1363_fdr	47	34	50	50	28	38	40	40	34	48
GTAAACGTACTTGATA	alt_1363_fdr	0	1	0	1	1	0	0	0	0	0
ATAATGTGACTCTGTT	alt_1363_fdr	202	93	259	219	111	203	113	179	125	190
GCCCAGGATGTGCGGC	alt_1363_fdr	61	53	67	61	48	58	58	83	52	65
CTGTATCCATACTTAG	alt_1363_fdr	71	46	67	57	42	52	43	57	54	46
GGAATGCGTTACAGCG	alt_1363_fdr	35	33	36	36	32	35	29	34	28	30
CCTACTAACTTCCAAG	alt_1363_fdr	89	75	100	93	48	49	71	53	77	56
TGTTATATTTGCATCA	alt_1363_fdr	40	16	46	25	13	30	22	32	22	33
TCGAAGGTGCTTTAAT	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGTGCGGGGCATT	alt_1363_fdr	38	18	45	28	21	35	21	31	32	25
TCCAGACCCTCGGTTA	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
GCGTTACGCTGTATCC	alt_1363_fdr	80	62	86	80	57	51	53	54	52	45
TTTCGAGCAGCCGATG	alt_1363_fdr	42	36	51	39	51	24	49	34	50	30
ATTCTGGGATCAGGTT	alt_1363_fdr	171	109	155	164	98	159	122	119	113	147
GTAACTGTAGCCTGGC	alt_1363_fdr	153	138	208	178	157	165	141	168	121	135
GCCTGTGTATCGTCCG	alt_1363_fdr	127	99	172	146	119	109	131	133	125	155
GCCCATATGTACACTA	alt_1363_fdr	70	48	81	66	52	51	53	55	55	50
TTACCCGAATCCAGAG	alt_1363_fdr	122	92	146	139	93	94	93	125	86	99
CCTTCCATCCGCAACG	alt_1363_fdr	20	70	28	40	74	25	73	26	57	29
TCAGCTATCCAGTTGG	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
TCTTTACTTATACACT	alt_1363_fdr	9	28	6	9	29	3	20	7	23	4
CGTGTGCATTTCTACT	alt_1363_fdr	69	53	87	62	63	69	56	76	52	68
CAGCCCGGTCAAGTTG	alt_1363_fdr	10	13	10	11	7	6	11	10	12	10
AGCTTAACACCTGGTT	alt_1363_fdr	31	18	43	32	26	27	19	30	18	21
ATCACTCTCGACTTTC	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
TTTCGGTCCATATCAT	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
CTATCAGACCTACGGG	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
GTGAGAGCAGGCGCCG	alt_1363_fdr	21	14	33	20	15	15	14	12	12	20
GAGCGGGTCTCATTAA	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
CTATAGCTTAGGCACT	alt_1363_fdr	24	15	30	30	18	23	26	30	30	29
ACTAGGTAGATCCCAG	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
TTAGTTAGGCATGATG	alt_1363_fdr	36	17	41	29	32	36	18	32	22	37
AAAGTTACGGCCCCGA	alt_1363_fdr	19	7	25	24	14	13	14	22	14	22
TGCTCTTTCCATCCCG	alt_1363_fdr	11	12	21	18	8	15	5	16	11	11
GTCAAGCGAGCTCTCT	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
CAGTGCTTTTATAAGC	alt_1363_fdr	138	101	198	117	106	100	97	143	129	102
GTGTACTCAGCAAAGC	alt_1363_fdr	16	8	24	17	17	15	15	25	19	14
TGGCAATTCGTTTGGT	alt_1363_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCGATTTGCGTGT	alt_1363_fdr	32	28	36	31	31	28	42	31	33	23
TGTCTACAAGTACCAG	alt_1363_fdr	64	37	88	55	36	47	59	53	46	52
GCCATGATACCTTGAG	alt_1363_fdr	83	47	94	71	54	58	60	69	65	54
AATCTCCAATCCTTGT	alt_1363_fdr	48	34	44	42	27	31	40	34	30	35
CTGCAATTTCTCGTAT	alt_1363_fdr	76	52	80	69	34	68	48	59	58	46
GTGGTCATCCAGCACG	alt_1363_fdr	18	13	27	15	13	15	17	16	16	20
TTCCGATCGCCAAGTC	alt_1363_fdr	19	21	32	17	31	13	20	31	24	20
GCCTGCTTCAGTTGCA	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TCAACTGTGCTGCCTG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
AGGTCCCTGTTCCGCT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TTTGCGCGTTTATCAC	ref_4913_missing	7	5	9	6	12	5	5	6	7	6
CTGTACTTCTTTTCTG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CAACATATATCGGTTA	ref_4913_missing	20	42	29	19	34	23	59	27	36	19
TTATTCCTGTAGACCT	ref_4913_missing	3	3	7	5	3	5	5	3	3	4
AGAGAGACTTGCTTGT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CTCATAGTCTTGAGCT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CCCGCCCTCGTGGTTC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
ACCTGCGAGAAGCCTT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CTTATAGACATCGTCC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CTAGAAAGCGACACCG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TTACCAGGCTAATCTA	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
ATATTCGTGGGCATTG	ref_4913_missing	5	15	29	11	32	16	29	7	19	3
AGGGGCATTTGTGGCT	ref_4913_missing	6	10	8	4	4	7	7	7	10	9
TCTTCCTTTTGCCACA	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
AAACTAAGTCTCGCTT	ref_4913_missing	3	7	5	4	5	1	4	2	3	3
TGCGTATCGGTCTCCC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
ATTCGCATTGGAATGT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TCTCGCCGTTATGTGA	ref_4913_missing	0	1	1	2	1	0	2	2	2	0
TGCTTTCCCAATGTCC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CCATGCGATTATCCGC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
GTTTAAGGGTCCTGCC	ref_4913_missing	22	28	26	18	32	13	36	20	21	9
CCGGTTCGTTCTCACG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TAATTCGGTATTGACC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CCCCATTTACTACCGG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
GGGACATCGCGCCATG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TTATAGAGTTCCCCGT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TAAGCAACTATCCTGA	ref_4913_missing	2	2	1	2	3	4	6	3	9	2
GATAATGTGACGCTGT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
GCCGTGCTGCCACTTG	ref_4913_missing	3	3	6	4	3	1	8	5	10	7
ATGTTTCTAGCGTGCC	ref_4913_missing	2	15	5	2	11	4	12	4	9	6
ACATTTCGAATCACAA	ref_4913_missing	11	6	8	6	8	9	10	2	11	1
CCGCGACTATTAGGTA	ref_4913_missing	7	14	11	14	14	7	16	13	9	6
ATCTATTTATAGGACC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
AATATCATTTTTCGGA	ref_4913_missing	25	31	35	26	44	30	50	25	43	18
CAGTTTCGCGGTTCCA	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
GCTCGCTAGTAGTTAT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
GCGTAGGATGCTGAGT	ref_4913_missing	19	25	22	18	22	16	29	16	24	14
CACCGTCAATCCTCTA	ref_4913_missing	7	26	11	8	19	12	24	8	24	3
TTCGATCCATCCTTCA	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
GATGGGTGTTCGCGCC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CTTTGGTATGGCGCCG	ref_4913_missing	18	24	29	14	16	27	25	17	25	19
ACGAGGGACTATTTAC	ref_4913_missing	3	11	7	4	10	4	5	5	7	8
GAAGAGTACCTGCCAC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CCGCCTTGCTTATAGC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TGGAATGTCTCTAGAC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
ATATGTTTCACCTATT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
ATCTCCTCTAGACCTA	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
ATTGTACCAGGGTTCA	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TATCCTCGAAGACCAC	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TTTCAGCTGAATCACG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TGTATCAAGGTATGCG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
ATAAAGCGATCCAGTG	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
CGCTAGATCTTTTGGT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
GCCTTTTCCGCTCCGT	ref_4913_missing	0	0	0	0	0	0	0	0	0	0
TCGTTGACATCTCTCC	ref_4913_missing	8	7	9	12	9	6	9	12	6	6
GTTCTCTGCGACACAC	ref_4913_missing	2	3	1	3	2	1	3	3	4	1
GCAATGTTTTGGGCTA	ref_5647_new	122	220	197	146	197	157	188	126	209	139
ACTTGAAATCTGTTCT	ref_5647_new	12	14	17	10	12	13	12	10	14	3
TCTCCTTGATCTCTTA	ref_5647_new	1	13	3	2	11	3	12	2	11	0
GACCGGGTATCCGCTT	ref_5647_new	47	29	44	29	45	34	31	38	55	45
ATTTTTAGTGCTAAAG	ref_5647_new	22	14	21	15	11	14	24	19	32	19
CAGCTTCCTGTTATTC	ref_5647_new	11	21	9	9	16	6	8	8	19	4
CGTATCTCCCTAAAAC	ref_5647_new	0	0	0	0	0	0	0	0	0	0
CGTGTGCATGCTAACG	ref_5647_new	16	36	20	13	15	10	18	9	14	7
TAGTTTGCGGCTCCTT	ref_5647_new	15	25	19	12	28	28	24	11	21	19
TGTCCCCGGCATCTAT	ref_5647_new	37	41	50	37	58	37	76	44	64	23
CGCTATGTGGAGTATG	ref_5647_new	62	78	83	53	60	54	60	56	82	58
TCAGTGCGGCCGTATG	ref_5647_new	22	25	26	21	34	11	20	24	34	15
TTACAAGGCCCTAGAC	ref_5647_new	0	0	0	0	0	0	0	0	0	0
TTGTGCGCTTACGTTA	ref_5647_new	52	59	53	43	60	37	65	42	80	35
CAAGCGGTATCCCGGG	ref_5647_new	11	17	16	14	13	11	22	8	28	6
CATGGAGGAACTCGTC	ref_5647_new	22	25	28	26	18	30	24	27	23	16
TGGGGTAATTGCGCAT	ref_5647_new	6	10	3	4	10	6	6	10	10	4
TTCTAGTTGGTCAATT	ref_5647_new	20	24	22	11	17	11	29	3	25	17
GTTCTCTATGTAGGGT	ref_5647_new	65	88	84	55	94	63	95	63	90	48
TTTTGTTGAACGACGG	ref_5647_new	10	17	18	21	16	15	23	14	17	9
ATGTAATCCTGCCTCA	ref_5647_new	69	87	66	58	80	36	75	57	83	52
GAACGTGTGTTCATTT	ref_5647_new	115	133	114	103	131	96	134	86	148	88
AGGGGACTGTTGGTCC	ref_5647_new	19	24	17	13	19	28	21	15	21	15
TTAAAATTCTTTGTGG	ref_5647_new	60	82	76	62	72	68	87	38	86	63
TTTCGTTCATGGCTGG	ref_5647_new	140	166	178	134	131	116	156	117	150	128
ATTATAGTGAGTGAAG	ref_5647_new	0	0	0	0	0	0	0	0	0	0
TCGCACAGTTACTTTG	ref_5647_new	49	67	59	66	84	35	73	48	77	58
ATTGCGTGCGTTGTCC	ref_5647_new	20	20	20	15	22	25	19	16	26	35
AAAACCTGGTTGCGTG	ref_5647_new	0	0	0	0	0	0	0	0	0	0
TTGCACGCCTGGTTTC	ref_5647_new	88	76	85	79	86	64	87	64	100	63
TACTCGTATTTCTAGA	ref_5647_new	0	0	0	0	0	0	0	0	0	0
TTCGGTCAATAATCAA	ref_5647_new	0	0	0	0	0	0	0	0	0	0
CCTTGTGCTTTCCCTT	ref_5647_new	24	43	48	34	57	32	43	43	44	22
GACACAAAATATTTAG	ref_5647_new	0	0	0	0	0	0	0	0	0	0
ACATGCAATCGTCTGC	ref_5647_new	46	51	48	39	43	34	58	32	56	39
AGCATGGCTAATCTGT	ref_5647_new	114	121	142	101	126	88	119	132	132	96
AGTGATTGTAGACTAA	ref_5647_new	2	1	2	2	6	0	4	1	4	1
GGAACCACGGCCTGGC	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
CAACATGCGTTCGTAG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
AGCTTATTGATACCCA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
AGCGTGTGCCGGTTCT	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
GCGAATACTTTGGGGA	alt_2600_missing	14	13	14	9	13	11	8	10	21	8
ATTAAGTCATTCTTTG	alt_2600_missing	5	12	8	8	5	11	5	6	9	6
CACGCTGACCTTGCTT	alt_2600_missing	0	5	0	3	0	3	5	4	0	1
ACGGCACCTAGCTTCA	alt_2600_missing	3	4	1	4	1	3	5	1	8	4
GTGACTTCGGTCTGCC	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TCACGGCTTGGTTGTG	alt_2600_missing	26	26	31	28	32	28	41	29	38	25
TCGTATAGCAAAATTG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
AGCCGTCTATGATCTC	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
AGTTCATAACTCTTGT	alt_2600_missing	2	2	0	2	0	0	1	0	2	0
CTACGGCTGGGGCTCT	alt_2600_missing	35	45	37	45	39	39	53	44	60	23
GCACCATTTTGTTTAA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TTGCTCCGCCAGCTCT	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
GCGCTACGGCGTTGAG	alt_2600_missing	16	28	18	14	25	23	17	22	31	18
ACCTCGGCGATTAGAC	alt_2600_missing	9	9	9	17	6	12	14	9	12	16
GTCTGGTCTCTCTCCG	alt_2600_missing	9	3	7	3	5	2	7	1	4	0
TGTCGCCAACCTCTTG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
CCTCAATTACCGGTCT	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
CAGTCGCTTTGGTTAT	alt_2600_missing	3	1	3	0	2	2	1	0	1	1
GGTCGCTGGTCTACGC	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
AACGCTGTTGAAATGA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TTGTCGGAAGCCTAGT	alt_2600_missing	11	8	12	11	17	15	10	14	10	7
TTCAATGACTGTGTCG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTTCGCGCGGTA	alt_2600_missing	0	1	1	3	3	0	2	1	3	0
TGTGGCGTCTAAAACG	alt_2600_missing	24	24	15	11	29	20	22	28	32	21
GGGTATGGGGGTACTA	alt_2600_missing	9	9	10	11	14	16	18	11	16	4
CACCGGCATCTTTGTC	alt_2600_missing	20	21	20	18	22	20	24	19	32	15
CAGTTGTTTATTTACC	alt_2600_missing	3	2	0	0	0	3	2	1	2	1
GCTACCCATTCGCTTA	alt_2600_missing	10	25	20	14	12	9	25	11	24	6
CACCGTCCGTTCTTGG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
GCCCTTGCTGATGCTC	alt_2600_missing	19	13	22	18	18	7	22	10	10	5
CGTGTTGTCATCAATG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TTGATAGCTGATTAAC	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
GTTCCGTCTCGCCCTA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
GCCTCCGAACGTTTAG	alt_2600_missing	5	28	19	9	17	6	21	4	15	8
TACCTTCCAGCGAGTA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
AAACTCGGGCTTTCTA	alt_2600_missing	1	1	3	5	3	8	5	2	5	8
AAAACGCCGTCTTCGT	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
GGTGCCCCAATGCCAG	alt_2600_missing	22	49	22	20	38	23	34	26	35	15
TATCTCGTTAACGGGG	alt_2600_missing	8	5	11	17	12	10	11	10	21	8
ACCTTAGTACCGCGGT	alt_2600_missing	19	27	12	19	31	19	37	12	38	9
GAACCTGCATCCACCT	alt_2600_missing	1	5	7	3	10	5	10	2	7	6
TATGGAACCAATGGTA	alt_2600_missing	6	16	6	6	5	9	7	6	5	5
TCTTTGCGTACTCGAA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TGGGCGATTACAGTGG	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
CTATTTCTCACAGGTC	alt_2600_missing	8	6	5	5	4	8	1	3	8	2
CTTTTTGCAATCGGGC	alt_2600_missing	23	30	28	28	39	27	43	14	32	35
CCGCATGCTTAAGGAG	alt_2600_missing	0	1	0	0	0	1	4	1	1	1
AGGCAACTTATTGTAA	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
CGCTTCGCCGAGCACC	alt_2600_missing	0	0	0	0	0	0	0	0	0	0
TGTGAGCCTTTTAGGC	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
CTTAAGTGTCAGATCT	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTTCGTAGCTGT	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
ACAGTTGCGATTAATA	ref_2434_missing	21	40	26	19	31	16	36	28	52	18
TGTTTATTTGGGTTAT	ref_2434_missing	3	8	3	3	13	1	7	2	4	4
CACAGCTTGCCTGATT	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TCTAATGAGGTTTCTA	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TTAGCTCACGGACCAA	ref_2434_missing	0	1	1	1	3	3	3	2	0	2
TAATAGTCGCTGTTAA	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TGATATGCGGTTTCGC	ref_2434_missing	13	15	11	7	24	15	12	14	28	9
TGCAGGTCTACCACTC	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
ATTGATTGGATACTAG	ref_2434_missing	46	86	41	38	92	32	72	32	83	40
TTTTTTCTACTACGGT	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TTCACTGGAAAGCCGC	ref_2434_missing	3	4	5	2	12	1	7	0	11	4
GGTATACCGCATGCTT	ref_2434_missing	87	176	118	97	194	95	223	85	172	88
CTCCGACCACCCCTTG	ref_2434_missing	9	22	8	11	32	4	24	9	27	2
TACATAACGGTGTTGG	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
GTCTTTTGTCGAACGA	ref_2434_missing	3	10	6	5	9	5	10	2	6	5
TAAGACTCTAGCATCG	ref_2434_missing	5	9	1	6	15	5	11	4	9	7
CCGTAAACCTGGAGCG	ref_2434_missing	5	27	6	6	25	3	23	3	37	2
CGTGTTCTTCTCTTCG	ref_2434_missing	2	4	4	2	10	0	9	5	6	2
CAGTCCACAAGTCCGA	ref_2434_missing	7	25	6	3	27	8	23	10	28	7
TTTACCCCCGTGAGGT	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
CCCAGCCTATTTAACA	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TTACTCTCGTCCTTCC	ref_2434_missing	93	148	80	87	161	76	136	96	134	77
TGCGTTAATTTCTGTT	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
CTAATCGCCATGTTTG	ref_2434_missing	8	7	15	16	14	12	10	16	16	10
GATCTGGCCGGCTGTT	ref_2434_missing	8	20	11	16	14	12	15	10	18	7
TCCCTGATTGTGATTT	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
GAATCGTTTTGCGAAG	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TGTAGGACGGGATAGT	ref_2434_missing	100	158	115	83	174	93	212	91	173	95
GGTTATCCTGGCTATG	ref_2434_missing	15	29	34	26	55	25	56	15	61	24
TGTATTACGCTGAAGC	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
CAGGGTGTCAGCGGCG	ref_2434_missing	1	1	2	1	3	0	7	2	3	0
CTCATCTATATCCAAC	ref_2434_missing	0	0	0	0	0	0	0	0	0	0
TTTCTAATCACTTCCG	alt_4161_missing	14	18	20	11	10	12	22	7	21	6
TCGACCAATTGACATT	alt_4161_missing	1	2	2	0	6	2	8	1	2	5
TCGGGTATGGGTAGGT	alt_4161_missing	27	43	26	19	56	31	39	25	52	26
TGTAGGTCTCTCCGTT	alt_4161_missing	23	23	26	17	23	8	17	13	16	22
CTCCCACGCTAGTCCC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GTAGTATCTTTCTGTC	alt_4161_missing	2	2	4	5	3	3	8	1	4	3
CGCTAAGCTAGATCCT	alt_4161_missing	4	12	6	8	12	8	9	4	13	6
AGCCGCGTGAGTCAAT	alt_4161_missing	2	12	8	6	9	2	9	1	9	6
TCTCGATCTAGTGCTC	alt_4161_missing	6	12	4	12	6	7	12	6	16	5
CTCACGCCTATGTACA	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CAGAAGACATTTTCGG	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GATCGCGTCTTTAGGT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GCAAAAATAATGGCGC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
TCCCACGTAGTGTCCT	alt_4161_missing	1	0	0	0	0	1	0	0	0	0
AGCCGTCTCATTCTCT	alt_4161_missing	17	43	20	32	42	12	52	11	57	20
CGTTGCCCACACTCGC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CCGGCGGTCTATATTC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTTCTCCCCCCG	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GTTCATACGGGGCACG	alt_4161_missing	1	4	1	1	1	0	2	2	2	1
TTTTGGATGGATACAC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CTATTAACATGCTATC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GGTATGGGATGGGGTC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
TACTTTCCGAGGCAGC	alt_4161_missing	5	2	2	2	6	1	2	0	3	0
GAACATTCGAATATCC	alt_4161_missing	1	7	0	5	6	2	13	4	9	4
CTTAAGAGAGGCGGGT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CCATTCGCGTCTGAGC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
ATGATAGCCTGACACT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GTCTTAATGCGATAAC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CTTGGGTGAATTAATA	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CATCAAGAAGTATATA	alt_4161_missing	16	25	17	14	26	7	26	18	21	10
AACGTGTTGTGTGATT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CTCATTGCTGTTCAAC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GTAGCATAATACGGGG	alt_4161_missing	6	4	3	4	11	2	8	3	16	7
CCTGGAATGATTCGGT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
TAATCTGGTGTGAGCT	alt_4161_missing	4	3	3	3	8	5	5	4	6	2
TCATCACGTGCCGTGA	alt_4161_missing	1	3	2	2	3	4	3	2	1	0
ATGAGGCTCAGACTCG	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
TTTGAATCAGTAATAG	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
ACAACTTGGTTTATTT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CAGGCTTGCTTTCACG	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
ACTGCGTTATGTGATA	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GTCCTATGGTCTATCT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
TTACCTCTCCCATGTA	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
CGCTTCGTGTCATGAT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
TCGGCAATTATTCTCT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
GCCTACGGCCTTATGG	alt_4161_missing	5	5	3	1	6	1	6	3	2	0
ATCATATAATAGCGCC	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
TTTACCCGTTTTCTCT	alt_4161_missing	0	0	0	0	0	0	0	0	0	0
ACGTCTTGCATCCTCC	alt_5834_new	0	0	0	0	0	0	0	0	0	0
GCTATTATAAGGCCTT	alt_5834_new	0	0	0	0	1	0	0	0	0	0
GAGTTATCAGCCAGCT	alt_5834_new	3	7	9	6	4	8	2	3	6	4
CCAAATATCAATTCCC	alt_5834_new	14	15	12	11	15	13	13	11	14	12
CTATTCCCGCGCTCGC	alt_5834_new	0	0	0	0	0	0	0	0	0	0
CAGTGCTTCGACGGCT	alt_5834_new	38	52	46	52	56	33	40	34	50	29
AGGAAAGATGTTTGTG	alt_5834_new	3	8	6	2	5	7	5	0	7	4
AGGCCGTCGCGCAACA	alt_5834_new	8	11	13	13	10	12	6	9	12	15
TGCATGCACCCGACAT	ref_3932_missing	0	0	0	0	0	0	0	0	0	0
TCTGCGTATCGTACAT	ref_3932_missing	0	0	0	0	0	0	0	0	0	0
TCCTCCTTAGTCTTCC	ref_3932_missing	0	0	0	0	0	0	0	0	0	0
GTCTGTTCGAACCTAA	ref_3932_missing	0	0	0	0	0	0	0	0	0	0
GGCCCGGGCGAACTCC	ref_3932_missing	0	1	0	0	0	0	0	0	0	1
AATACCGACGCCACTC	ref_3932_missing	0	0	0	0	0	0	0	0	0	0
GTAACAATGTCACTTT	ref_3932_missing	0	0	0	0	0	0	0	0	0	0
TGTACATTGCTTAATG	ref_3932_missing	0	0	0	0	0	0	0	0	0	0
ACGTATTACGTGGTGT	alt_5644_new	0	0	0	0	0	0	0	0	0	0
TTTATTATCACTTCTA	alt_5644_new	6	16	19	8	9	4	7	11	9	5
TGCGTGACGATACCGG	alt_5644_new	0	0	0	0	0	0	0	0	0	0
AAAACACTTTTTCACA	alt_5644_new	0	0	0	0	0	0	0	0	0	0
CTTCTGACCCTTAACA	alt_5644_new	0	0	0	0	0	0	0	0	0	0
CGGCTAATTTCTCAAC	alt_5644_new	0	0	0	0	0	0	0	0	0	0
CCCGAGCCTATCATGC	alt_5644_new	12	29	9	6	23	2	16	13	18	12
GGAGATTTTATCCTGG	alt_5644_new	0	0	0	0	0	0	0	0	0	0
GCGGAAATCTGAGAGC	alt_5644_new	0	0	0	0	0	0	0	0	0	0
GCTTATGTCAGCCCAC	alt_5644_new	0	0	0	0	0	0	0	0	0	0
TTTCCGTGGTCCGGAT	alt_5644_new	64	111	106	88	112	79	95	76	110	62
AGCCATATCTCCCGGC	alt_5644_new	84	85	112	69	106	68	89	69	114	79
GGGTAAATGGCTATCG	alt_5644_new	11	20	14	15	9	8	18	11	9	9
GGGAACCGCGAGCCTG	alt_5644_new	22	20	24	17	17	14	18	22	19	14
CCTATAGGCTGTACCC	alt_5644_new	0	0	0	0	0	0	0	0	0	0
GAAAATCTAGGCCCAA	alt_5644_new	19	33	29	16	41	22	26	18	20	21
TCCTTGGGTGGTCAGC	alt_5644_new	1	4	3	3	3	1	3	0	7	4
AACATCCATGCATGGT	alt_5644_new	12	17	12	17	18	5	16	9	24	4
AAGGCGAGTCCGACGA	alt_5644_new	0	0	0	0	0	0	0	0	0	0
TGGAGCAAACTATCGA	alt_4775_missing	15	21	25	15	20	18	14	15	30	14
TTTCGGCGTCGTTAAG	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
TCCATACGAGGTTCTT	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
CGTTTTGCTGTGCGAA	alt_4775_missing	12	13	17	15	18	6	24	10	21	14
ATGCCGCACTCTAGGG	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
AGGCTCTATTTTTGCA	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
ACTCTTTTCGGTTATC	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
CTTTCGCATAATACGA	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
ATTCAGGTAATACGTA	alt_4775_missing	23	22	17	26	22	18	24	17	28	17
TCATGCAGACATGGGA	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
GTGACCACTCTTTCCG	alt_4775_missing	1	2	0	1	0	2	1	0	2	0
TCCGCCGCTGGTGTAG	alt_4775_missing	2	2	3	5	3	2	4	4	4	4
CAGGCGGTTTTCGAAA	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
ATAACATTCCACACGG	alt_4775_missing	3	1	1	1	3	2	2	1	1	0
TTCTTTCCTGTCTGTG	alt_4775_missing	2	4	1	3	1	2	1	0	2	4
CTATAGATACAGCTTT	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
CTTTTCCCGTGGTTGG	alt_4775_missing	3	8	4	0	4	2	2	3	1	3
GGTGTGTGTAACAAGG	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
ATGGTGGTACGGCTGC	alt_4775_missing	9	12	11	13	6	13	10	9	7	8
CATTGTACCCCAGTAT	alt_4775_missing	5	5	9	1	4	2	6	3	5	4
ATCGCGTTGTTATACT	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
CGGGTTTGTATAACCT	alt_4775_missing	8	11	6	10	2	6	10	6	4	6
CGACCCCCAGCCTTCT	alt_4775_missing	0	0	0	0	0	0	0	0	0	0
GATGTCATTACTCTTG	alt_4775_missing	14	3	13	17	8	6	11	11	6	7
ATGGATGATCTTCTAT	alt_4775_missing	22	11	15	14	8	8	16	10	14	13
TGGGTTCGGTTGCACC	alt_4775_missing	7	6	3	3	4	2	3	3	2	4
CCCACTCCGACCCTTC	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
AGTTAGGCTCGGTTGG	ref_1583_missing	3	10	5	8	12	7	9	14	8	3
ATGGTGCGATGCTGTA	ref_1583_missing	0	3	3	0	0	4	2	3	2	1
TACTGTTCTTTAATCT	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
CAAGCGACCCTCCGTC	ref_1583_missing	37	64	51	44	57	41	57	40	78	35
CACAGCGGTGTATACG	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
GGCAGGCATATTATCA	ref_1583_missing	9	10	13	12	9	13	9	7	15	7
TGTAATTACGTGCCAT	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
TGGCTAGAGTTCTAGT	ref_1583_missing	12	9	10	7	6	1	19	10	8	5
CTAGGCTTGCCAATGA	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
TGGGGGGGATTGGCCT	ref_1583_missing	11	11	17	11	9	12	6	14	12	12
GCGGCCTGGCGCAGGT	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
GTACGATTAGCTATAG	ref_1583_missing	13	9	25	14	14	8	19	11	18	18
TGTCGTGTGTCGTACC	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
GAAAATACCTCAGGAT	ref_1583_missing	12	14	18	14	4	9	13	3	15	11
ATATTCCCGTTCGTGT	ref_1583_missing	8	9	5	5	8	4	8	7	7	1
TTGTTCATGCTAGTCT	ref_1583_missing	2	1	0	4	4	1	3	0	2	0
GTTAGTAAGCTAGTAC	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
TACCTTCTCACGGTGA	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
CTTGGCATTGCTTGCG	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
GCCCTAAGTGAACCCT	ref_1583_missing	4	1	8	7	7	5	2	1	5	3
ACAGCAAAAGTTTATA	ref_1583_missing	15	12	19	10	17	10	15	7	14	9
GCTTGGCGGCAAGCGG	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
CGACAATTAGAAGCCC	ref_1583_missing	2	1	5	2	3	12	6	2	4	0
GATTGCGGCCTAGGGC	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
TGTGCATGTACTCTTG	ref_1583_missing	13	12	34	18	18	27	16	15	24	20
ACGCGCGGACTATTCT	ref_1583_missing	1	7	6	8	7	1	5	11	5	5
CTGGCAAGCCTTATTT	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
TTCCTACTACCCGAGA	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
TGATTCCATTTAGCGG	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
CCCTCGGCAGGATGTA	ref_1583_missing	0	0	0	0	0	0	0	0	0	0
AGCAATATGTTAACCG	ref_1583_missing	12	21	28	25	24	18	29	17	23	10
ACGTTCGCCAGCCGTC	ref_4170_upstream	12	21	24	26	15	22	17	25	18	21
CTATGGTTCTGGGCTT	ref_4170_upstream	32	34	46	48	30	44	34	41	40	34
ATATTATTCAATTGGA	ref_4170_upstream	74	61	100	76	75	67	78	60	71	66
ACTTGAAGGATTACTT	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
TATCTATCGGTCTCAT	ref_4170_upstream	90	52	105	64	38	77	41	68	38	79
CCCAGAAATTATTTAA	ref_4170_upstream	6	6	5	8	4	5	1	5	2	4
TGGGAAGCGAAGGATT	ref_4170_upstream	2	3	1	1	5	0	6	1	4	2
CATTTACAGCGAAATG	ref_4170_upstream	173	81	180	176	81	141	96	151	123	126
TTCGAAATACCATTCA	ref_4170_upstream	63	33	66	53	38	46	42	55	47	42
TGGGATGAAAAACGAG	ref_4170_upstream	92	65	107	78	69	91	73	75	69	60
CCTATTCCCTCTCGCC	ref_4170_upstream	29	9	39	23	13	26	21	20	15	25
TATTAAAAGACTCTGC	ref_4170_upstream	37	27	55	29	22	47	17	35	22	39
TACTCACGCTATAAGT	ref_4170_upstream	81	53	87	58	48	67	59	52	60	56
GTTTTGCTTTTGCCGT	ref_4170_upstream	9	8	19	14	5	15	6	20	11	19
AGCATATCGTGCATAT	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
AGGCACTACCTGTTTT	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
CTTTTGTTTAACGGAA	ref_4170_upstream	12	27	21	15	25	6	20	13	28	18
CTGGGGTTTCACCAGG	ref_4170_upstream	100	76	149	117	80	126	81	100	81	105
ACGCCACGTAATGCTT	ref_4170_upstream	67	32	93	68	37	59	41	54	45	54
TTACTTCGCAATGCGG	ref_4170_upstream	130	81	177	176	86	128	78	128	97	125
AGTCTCGTCGCGATAT	ref_4170_upstream	58	37	75	62	47	74	51	48	43	65
TTGTTTATGCCGCCAC	ref_4170_upstream	63	31	84	54	37	68	40	60	42	65
GAGGAATCCTTGAGAT	ref_4170_upstream	80	37	79	90	47	59	40	79	55	74
CTAGATCGTTGTCCCA	ref_4170_upstream	40	43	48	29	36	44	32	40	39	38
GGCCGATATTCGGCTC	ref_4170_upstream	47	23	36	39	28	44	33	40	33	27
GGTCCGGAGGGTCCGT	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
CCACCATTGGTCTCCC	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
CAAACCCTAGGATGGT	ref_4170_upstream	4	4	10	10	10	6	3	15	1	6
GGCGTCTATGTATGAA	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
TTGCTAGGACATGTGA	ref_4170_upstream	26	22	35	38	22	25	24	25	19	29
TGCTAACTTTACCACA	ref_4170_upstream	51	35	48	57	42	74	45	46	48	42
TGTCAACTACTTTCTG	ref_4170_upstream	8	5	6	5	5	5	9	8	8	7
TAGGTGGCACGTTCTT	ref_4170_upstream	45	24	62	52	40	34	45	60	28	48
TTAGTCTATATGCCGT	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
GGCTATGTTCCAACAC	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
CTAATCTAGGTCTGAG	ref_4170_upstream	39	23	48	32	25	21	26	38	21	30
CGCCCATCGTCATTAA	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
TGCATAACTGTTAGTT	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
TCCGGTAGCCAAGTGC	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
TTGAGTAAGTCAGAGG	ref_4170_upstream	37	21	31	26	30	35	31	30	23	36
AAGATACGAGTCCGGC	ref_4170_upstream	68	52	106	80	59	76	41	78	58	62
CATTGTCGTTGGCTAC	ref_4170_upstream	18	14	28	19	23	19	11	28	23	14
CATGCAGTGTCGGTGT	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
CTTGGGTGGGTATGTG	ref_4170_upstream	38	37	59	60	50	44	34	43	38	36
CTTTGTTATAAAGCTA	ref_4170_upstream	7	10	17	15	13	12	15	9	7	7
AGTTCGGTCCCAGTAT	ref_4170_upstream	18	6	21	9	4	9	10	13	10	8
TCCAACGGCGCTTCTT	ref_4170_upstream	18	5	21	7	8	8	7	24	11	18
GACGCATTCTCTAGAA	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
ACTCTTGAAATCTAGA	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
CGTGCGGCCCCGCTCA	ref_4170_upstream	44	28	57	41	19	49	29	33	17	42
TTTCGTTCAGTTCACC	ref_4170_upstream	41	30	45	45	25	33	35	35	37	41
GGGTTGCATGCTCTTC	ref_4170_upstream	67	50	88	77	36	87	35	71	65	56
GTTCCGAAGTAAAACC	ref_4170_upstream	90	63	99	112	57	74	56	90	51	86
CTTCGACCAACGTTCC	ref_4170_upstream	0	0	0	0	0	0	0	0	0	0
CCCCACGCAACTTGAG	ref_4170_upstream	41	25	55	52	31	36	13	31	39	51
CAAGAGGCAATGAAGC	ref_4170_upstream	20	19	25	26	18	29	23	29	17	14
GGTCTGGCTTTGTATA	ref_4170_upstream	107	71	125	102	70	106	62	110	73	100
CAAATATTACGGAATT	ref_4170_upstream	97	42	81	85	50	80	57	73	63	84
GCCATTAACTAGCCGA	ref_4170_upstream	69	54	80	66	33	68	42	60	56	39
TAGTCGCTCGGTCTCT	ref_4170_upstream	9	7	9	8	6	10	4	8	6	8
TTTTCCTGATGATGGT	ref_4170_upstream	98	63	130	102	48	101	59	80	74	91
GGCTTTCGTGCTTCGT	ref_4170_upstream	48	40	50	34	33	28	49	43	26	31
CGATTGCACGACATCG	ref_4170_upstream	126	72	171	132	80	130	109	146	75	133
GAGTTAGAGCGGAAAT	ref_4170_upstream	114	87	147	111	66	109	91	73	68	84
ATTAGATTCCTGCCTG	alt_3600_missing	48	53	49	40	48	34	65	38	57	40
CAATGAATATAACGGC	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
ACGGAACAGTTGACAC	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
TTTTAAGTTTTGTTTC	alt_3600_missing	34	33	40	23	40	29	37	22	42	38
GTTTTACTCGGCTTGC	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
AATTGCGTGCCTTGCT	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
CTCTGCCTGTCACAAT	ref_3600_missing	35	60	33	38	68	48	73	29	66	33
AAACATGTGACCCTTA	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
ATACAGCATGTAGCAG	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
AACCTGGCTATCCTTT	alt_3600_missing	14	25	13	14	20	8	24	16	21	11
TTCCGTGTTCGATTCG	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
GGGTCATTCGTTTTAG	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
CACTGTATCAGTAAGA	alt_3600_missing	4	8	9	3	10	7	9	4	12	8
AGCCGACTACTCTCCG	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
CTCAGTAGGTATAACA	alt_3600_missing	3	5	5	5	11	1	3	7	12	9
GGTCACCCCAGGTCCA	alt_3600_missing	48	29	48	49	31	39	31	30	49	28
CATCATAAAGGCGCTA	alt_3600_missing	74	66	80	60	80	62	78	63	71	68
TAGTGTGCTATGGTCT	alt_3600_missing	25	36	36	28	37	26	29	32	28	35
CGCCCGGTCTGGGAAT	alt_3600_missing	6	3	1	1	2	7	4	2	5	2
GAGCAACTGAGTCTCG	alt_3600_missing	19	14	11	17	13	9	16	13	23	14
CTCCACCGGCTGTATC	alt_3600_missing	20	46	20	24	45	24	57	15	56	16
TTTTTCTTTTTCTATT	alt_3600_missing	45	32	64	45	46	40	28	35	34	45
ACGATTATGCTTCAGT	ref_3600_missing	19	27	17	21	26	16	16	10	36	8
GAGGGCATTCTCTACA	alt_3600_missing	23	35	21	25	32	7	33	15	26	18
ATTTAGTGGATTGCAC	alt_3600_missing	63	129	73	66	99	62	104	68	101	63
GAGATACGTATCTCAG	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
CTTCCAGGACCGAGGA	alt_3600_missing	0	1	1	3	1	4	0	1	2	3
ACTTTACAATGTGGGA	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
TTCGTATGCCAAGGGC	ref_3600_missing	15	21	18	9	21	14	22	18	12	16
GGAAACTTCCCTTAAA	alt_3600_missing	6	4	4	2	10	3	4	7	3	4
GGGAAGTTTGTCCGCG	alt_3600_missing	19	19	24	20	25	14	22	20	22	19
CATTCGGAGTGTATGA	ref_3600_missing	29	14	17	13	25	22	32	14	25	15
GTTACGGGTTCATTGG	alt_3600_missing	2	9	5	2	4	3	10	4	5	3
TACGACCATACTCTTG	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
AGTTCCGTCAGACTTT	alt_3600_missing	0	1	2	4	5	5	6	5	6	2
GCTCCCCCTTAGTCTA	alt_3600_missing	5	15	9	4	18	4	9	6	14	2
TTCGTGCATGCCGACG	alt_3600_missing	22	33	25	26	13	25	22	30	30	20
TGCTTGCGTAAGCTAT	alt_3600_missing	1	5	3	3	2	3	2	1	0	2
CCGTTATGATGGAGCA	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
CCGAATTTGCGAATGT	alt_3600_missing	0	0	0	0	0	0	0	0	0	0
TATTATCAAAACCGGA	alt_3600_missing	10	10	9	13	13	11	12	8	15	13
GTTATATAAGTGTTCG	alt_3600_missing	12	21	16	15	22	14	17	19	13	6
TTATAGAGTTTTCTGC	alt_3600_missing	11	14	7	10	4	9	10	8	15	5
TCCGGTCTTCTCCCAT	alt_3600_missing	19	28	24	24	28	18	46	20	45	22
CTGATCCGTCACCGAG	alt_3600_missing	40	56	52	52	52	45	63	36	71	34
CAATCTACACTTTGAT	ref_2256_missing	7	21	12	12	13	4	15	6	14	11
CCTCTCCCCGGGCCTA	ref_2256_missing	1	9	0	0	5	0	6	0	5	4
GACGTATTAGTGACAT	ref_2256_missing	0	0	0	0	0	0	0	0	0	0
CTTGTTCATCCCCAGG	ref_2256_missing	41	65	24	33	51	23	63	20	64	25
CAGTTCACATGGTTGT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GTGGCAAGGAACCACG	ref_885_missing	8	23	4	11	24	5	12	6	11	8
GCTCTTGAAGATTTCG	ref_885_missing	35	63	33	19	60	30	63	23	61	23
TATACATCAGCATTTA	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GTACCTATGACCCCGG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TTAGAGTTTCCTGACC	ref_885_missing	2	11	1	1	4	5	4	1	13	9
TGTTAAGTTACTTTCT	ref_885_missing	7	11	5	9	15	10	12	6	10	3
TACAGGACGCATACAT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GGGATCGTAGCGCGGG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TTATTGCTCGGTCGTC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TAAACTCATCAGAAAG	ref_885_missing	26	45	21	22	35	31	61	16	42	17
CATATTCAGATCTGCC	ref_885_missing	1	12	0	3	3	1	0	1	5	0
TCTCATCTGCCTTTGA	ref_885_missing	3	15	12	3	17	6	18	9	26	9
TGGTTGGTTTCCGAAC	ref_885_missing	5	25	9	6	27	6	22	7	26	12
CTTTGCTTTTTTCGAT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
AACTAGCGTAGATCTG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GTTCTTAGGCGTTTCA	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GAGCGAGGCGCAATCC	ref_885_missing	10	8	8	6	11	8	9	1	15	3
GTACCGCTCGAATCTC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TGGATCAGAGGGCTAG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GGCTTGCGTTTTAGCC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GCATATTTCCTGTTTT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TGAGGTGCTATCTCAG	ref_885_missing	27	32	34	23	33	19	42	18	49	12
GTACTGTTCTCGACGC	ref_885_missing	8	14	8	8	14	3	11	5	14	3
GGCTCGTCGGGAATAT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TCGGGGAAGATTTATA	ref_885_missing	0	0	0	0	0	0	0	0	0	0
CACCGACACCAGGACA	ref_885_missing	0	0	0	0	0	0	0	0	0	0
CATAGTGATCTGGTAT	ref_885_missing	1	7	1	0	5	1	7	4	5	2
ATGGTTGCTTAGCAAT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GGTTATGAGTCTGTTC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TAACTACGATTTTTAG	ref_885_missing	2	1	1	5	4	7	4	3	8	1
CCTACATAACAATGTT	ref_885_missing	2	6	2	4	10	5	6	3	3	6
GTGAGTTCGAAGACAC	ref_885_missing	11	16	11	9	22	10	26	6	13	8
CTGCCTTATTGGTGTT	ref_885_missing	3	13	8	12	15	2	18	3	17	4
GGCCTTCCATTGAAGC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GTGTGCCTCGGCTATT	ref_885_missing	1	2	0	2	0	1	2	0	2	2
CATAGAGCGGGCAACA	ref_885_missing	27	45	40	26	58	33	71	28	72	31
GAAGCATCCCCGGACG	ref_885_missing	6	8	15	5	11	5	13	2	6	5
TCGGCCCATGTTCGCA	ref_885_missing	3	12	3	3	7	5	7	3	8	4
TTTGGGTGACTCTAGA	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TGTCCGCAATGTCTGT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
CTAGTTCTTTGTTCAT	ref_885_missing	5	15	6	8	10	4	19	3	14	12
CGATATTTTGCGAGAC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TCTCAATGTAATCTAG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GGCAGCTTAATAAGAG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TTTACGCCTTGGCAGT	ref_885_missing	8	14	11	9	10	4	10	8	8	6
ATTTGCACCATTGAGA	ref_885_missing	11	11	7	7	15	2	8	5	20	3
CCGTTTTCGCTCGCCG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GCTAACGCTAATTATT	ref_885_missing	7	6	3	2	3	6	2	4	2	4
TATCGTGCAGGCGGAG	ref_885_missing	15	18	9	11	19	14	19	6	17	9
CGTTCGTCTTGTAAGG	ref_885_missing	4	7	9	5	12	4	11	9	5	3
TGTCAGACCATGGTAC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
ATCCGGTCAGGTATAC	ref_885_missing	1	9	11	0	12	1	11	2	20	3
TGATAGGGTTCCGTGT	ref_885_missing	8	18	8	6	20	5	19	7	18	9
ACACCGCACCTGTTAT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TGTTTATCGATGCGCT	ref_885_missing	4	8	7	6	3	11	4	9	6	2
CTTTCCTCTAACTCAG	ref_885_missing	7	3	6	2	14	4	8	2	9	7
GCTTGAGAACTGTTAA	ref_885_missing	0	1	1	1	0	1	0	0	0	0
ATCTTTCCGACGCATT	ref_885_missing	2	17	8	8	11	11	14	2	19	2
TTCTTGGGCCCGGTAT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TTGCGCACGGATGGCG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
ACTAGGTCATATCCCG	ref_885_missing	7	13	10	8	16	8	16	4	13	2
AGACTTCCGCTAAAGG	ref_885_missing	5	16	9	4	19	8	9	4	22	5
ATTCCCACGCCCATTT	ref_885_missing	14	13	5	10	9	1	13	5	16	16
TGTTGATTTCGATGTA	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GCATCTGTAAAGGTCT	ref_885_missing	9	27	20	9	36	18	29	10	45	20
AGATTACCTTACGCCG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GGGGCATCGGACTTGC	ref_885_missing	8	21	11	9	18	12	20	13	29	12
TGGTTAGACGTTACCT	ref_885_missing	18	47	21	17	36	13	44	12	38	9
TTATACTGTCTCATTG	ref_885_missing	2	2	9	5	7	8	3	2	10	2
CGACTTTCTCACTCCT	ref_885_missing	12	23	12	7	19	7	16	8	19	9
ACTTCGTCTCGGTGTA	ref_885_missing	0	18	5	2	14	4	11	7	21	5
ATGTACTTCGCAGCTC	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GACACGCATTCGTTAT	ref_885_missing	27	34	21	20	27	21	28	17	37	8
GCCTCAATGGACGGAT	ref_885_missing	4	6	5	4	8	7	4	5	15	4
GCGGCCCTACTTTTAT	ref_885_missing	7	15	12	4	8	4	5	2	12	2
GGCCGGTCTATGATTG	ref_885_missing	0	0	0	0	0	0	0	0	0	0
CCGTTTTCTCCCCAAT	ref_885_missing	2	9	0	2	15	3	4	2	8	1
CTGGCTGTTGAATAGT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
GACCCTAATTAGCTCT	ref_885_missing	0	0	0	0	0	0	0	0	0	0
TCCAGTTCGGCTATCA	ref_348_missing	0	0	0	0	0	0	0	0	0	0
CATGGGCTGAACATTA	ref_348_missing	0	0	0	0	0	0	0	0	0	0
CAACTTTTGTTTCTAG	ref_348_missing	0	0	0	0	0	0	0	0	0	0
ACACATGTTCTTCACC	ref_348_missing	0	0	0	0	0	0	0	0	0	0
GGTAGTGTTTTCTCCA	ref_348_missing	31	33	47	37	39	26	32	43	51	40
TCCACAACGGCTCGCG	ref_348_missing	23	17	22	30	22	27	24	24	30	16
CTTGCACTCGGGTTAT	ref_348_missing	0	0	0	0	0	0	0	0	0	0
TGGGTATAACTACTCC	ref_348_missing	0	0	0	0	0	0	0	0	0	0
TCCTCTAGGTGAAATC	ref_348_missing	5	14	11	7	11	6	9	4	10	5
GTATTCGGATTCCCTA	ref_348_missing	23	11	26	20	24	22	33	24	28	19
TGCAACTCAAGTTAAA	ref_348_missing	74	48	112	92	83	61	71	64	95	60
CCGTTCCGAACCAGGT	ref_348_missing	0	0	0	0	0	0	0	0	0	0
GGAGCCCGCGCACGTC	ref_348_missing	95	89	111	94	87	84	76	89	87	79
TTTTTATCTCCATACG	ref_5982_new	0	0	0	0	0	0	0	0	0	0
ACACCCACCGGTTACG	ref_5982_new	0	0	0	0	0	0	0	0	0	0
CTTGGCATTCTGGTTC	ref_5982_new	0	0	0	0	0	0	0	0	0	0
ATGTTGGGCATTACCT	ref_5982_new	0	0	0	0	0	0	0	0	0	0
ACTTTGCTACAATCAT	ref_5982_new	97	162	115	61	170	88	176	100	192	73
TAGCCAAGCAGCATCC	ref_5982_new	0	0	0	0	0	0	0	0	0	0
TGCAGGTTATCGTAAT	ref_5982_new	18	46	20	15	44	15	44	11	34	15
CAGTAACGACTCCGTA	ref_5982_new	0	0	0	0	0	0	0	0	0	0
GTGAGGTACCTACGTG	ref_5982_new	0	0	0	0	0	0	0	0	0	0
TTTACGCTTATTCCGT	ref_5982_new	0	0	0	0	0	0	0	0	0	0
TTTTGCTCGATCTGTT	ref_5982_new	29	47	26	25	62	18	48	16	48	15
TCTTTGGACCCGTCGG	ref_5982_new	3	17	8	4	13	6	11	5	21	2
CTATCTTACTAGCTAC	ref_5982_new	28	69	33	32	58	26	66	30	52	24
GCAGGTCGTTCAGAGG	alt_3340_missing	73	122	112	86	96	64	119	82	122	71
ACTATGTGTGTCGTGA	alt_3340_missing	12	14	11	11	15	5	17	10	21	7
TCGTCACAGGTCGTAT	alt_3340_missing	4	13	15	10	13	6	25	12	33	12
GTTGCCGTGATGCGAA	alt_3340_missing	133	195	163	129	192	129	204	135	175	113
CCACTAATTCATGCTA	alt_3340_missing	23	44	30	25	29	28	33	35	46	20
AATAAACGTTAACCCA	alt_3340_missing	37	48	32	40	37	51	51	46	42	31
GGTTGTGGTTGCCCTC	ref_5557_missing	0	0	0	0	0	0	0	0	0	0
TAGCGTGCGATAGCCT	ref_5557_missing	16	33	22	20	24	22	30	11	35	9
ATTGTGTTTTCCGCCC	ref_5557_missing	9	13	13	7	6	8	14	5	17	8
ATACCCCGGGTGACGT	ref_5557_missing	30	76	29	31	83	37	74	36	62	17
ATCCGTGAGCTCACTG	ref_5557_missing	17	37	30	21	33	19	38	26	33	15
TGTCCTCGAATACTGT	ref_5557_missing	13	67	16	11	66	12	60	12	70	14
GGATGGACAGTGGTTG	ref_5557_missing	10	32	26	15	34	20	45	21	31	15
CTTTAAGTTGGTCATC	ref_5557_missing	4	5	10	4	10	4	14	1	11	10
TATGGGGGCTATCCCT	ref_5557_missing	12	14	11	9	22	13	28	8	14	5
ACGGGTCAAGGCTCGT	ref_5557_missing	0	0	0	0	0	0	0	0	0	0
CCGCTACGCCTGCGCA	alt_4932_missing	5	15	8	7	20	4	15	8	22	6
AAACATTTTACTCATC	alt_4932_missing	20	15	19	19	19	9	12	9	17	16
GGGTTTCACACACGAG	alt_4932_missing	20	10	10	22	10	17	15	15	14	24
CGTCTGAATTGATACC	alt_4932_missing	78	71	108	95	85	93	95	87	86	92
AGCGTGGCCAAGCTAC	alt_4932_missing	33	40	39	58	38	32	44	44	42	30
GTAAATCAAATGATCG	alt_4932_missing	326	249	352	370	267	301	277	290	268	262
TGCTTTCTTGCACAAT	alt_4932_missing	103	108	146	128	114	98	113	108	93	112
CCTTACGGGCTCGTGT	alt_4932_missing	22	47	27	25	75	18	65	15	68	18
AACTGGTCGGGCCTGC	alt_4932_missing	0	0	0	0	0	0	0	0	0	0
AAGAAAAAACGTCGTC	alt_4932_missing	2	2	4	8	1	6	3	7	6	2
CAGAGAAGCTTGTGCC	alt_4932_missing	0	0	0	0	0	0	0	0	0	0
CTCTGTTTGAAGGCCC	alt_4932_missing	0	0	0	0	0	0	0	0	0	0
ACCTCAATCCTTTCCG	alt_4932_missing	29	19	39	35	34	28	31	19	25	25
AGCTTTCTTGCACAAT	alt_4932_missing	0	0	0	0	0	0	0	0	0	0
TCCATCTTTTAGTACT	alt_4932_missing	12	13	15	17	12	3	12	20	10	11
TTCGTGATCCAATGTT	alt_4932_missing	0	0	0	0	0	0	0	0	0	0
ACGTTTGAAAAGTCAG	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CCAAGTGTACGCACTC	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TCCGTTATATGAACAG	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CTTGAAATACTCTATA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTCAGATACTAA	ref_3378_missing	4	8	9	9	6	12	7	4	6	4
CGGAAGATGGGTGGTT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
ATTCGTTAAAAGGTTG	ref_3378_missing	2	4	1	2	3	2	11	0	10	1
CGCTCCGTAAAGCCCA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CTGCTCTGGCAGCTCC	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
ACGCATGGTCGCTGGT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TCGCTTAAGCCGAATG	ref_3378_missing	11	12	13	7	11	8	21	9	23	4
TCCCAACCAACAGTCA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GGTAGCTGATTTCCAT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTCACCGTCCAT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TCAGGGCTAACTAAGG	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CAGCCTCTTTCCGGAC	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
ACACGGGTCATCGGCA	ref_3378_missing	0	10	9	1	9	4	12	5	14	9
TTGTGTAGTCTGGTGA	ref_3378_missing	5	18	0	9	9	9	16	2	13	4
AACACAATCAACACAT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TCTCGGGGTGTTTAAG	ref_3378_missing	5	20	8	4	17	7	11	8	13	7
CGATCCCCTAGTGCTT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GGTTGTCCGCCAGCAC	ref_3378_missing	0	0	0	0	0	0	1	0	0	0
TTGTTAGTCCAGGTCT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GATTTACTGGAAGCCA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GCAAACCCTCGTTAAA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TGGTGCACTCTCGTGC	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CGGGGGTGTTATAGAA	ref_3378_missing	3	18	9	11	9	4	13	9	15	6
TCTTCGATGTCGCTAC	ref_3378_missing	3	15	8	11	17	12	15	11	17	7
GTTATGTGTCATTGCA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TAACGCTATGCTTCTG	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
ATGCACTGTCTCTGTT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GAGATCGTGGTCTGGA	ref_3378_missing	90	159	99	92	157	73	147	76	163	81
TAGTTTTCTTATGTAT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
AAGCGAATCTTCGGCA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GATTCTGTAAGTATTA	ref_3378_missing	4	7	12	5	3	4	10	3	2	3
TTTAAACATACTTACG	ref_3378_missing	0	21	1	1	16	3	13	1	13	1
TGTGGCGATTAGGCGA	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CAAGTTAGGGTGCCTT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
ACATTCGGATCTATGT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GCCAACGTTTGCCAAC	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
ACGTGAGCCCGCTGTA	ref_3378_missing	10	24	18	6	22	6	23	11	19	12
TTGGTGCGGAGTGGCG	ref_3378_missing	12	23	31	14	21	22	19	21	34	14
GCCTGTTTGCCTATTC	ref_3378_missing	3	15	5	4	7	8	15	0	14	2
CTAGGTAGTCAACTTG	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TTCCCCGATTAGATCT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
TTTATTGATCATAACG	ref_3378_missing	0	0	2	0	0	0	0	0	0	0
TAAGTATGCAAAGCCC	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GCTCCCTATAGGCACT	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
ACGCAAGCAATATAAG	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CGTGTTTGTATTGTGG	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
CATTTTCGCAAGTAAC	ref_3378_missing	0	0	0	0	0	0	0	0	0	0
GACAAGTACACCATGA	ref_3378_missing	68	113	66	73	122	45	121	51	102	48
GGTCTTCATAATTTCC	alt_5978_new	57	89	86	84	116	59	113	75	108	63
ATCAGTTCTTGTTTTG	alt_5978_new	0	0	0	0	0	0	0	0	0	0
GTTAGGGCAGTCACCT	alt_5978_new	133	208	162	139	163	135	200	125	198	123
GCACACTTTTATTGTC	alt_5978_new	0	0	0	0	0	0	0	0	0	0
TCCCGTTCTGTTAAGC	alt_5978_new	9	30	17	9	14	11	13	7	16	9
CGAGCTTGTATCATCA	alt_5978_new	5	13	6	14	8	9	12	3	6	5
TTCAGAGCTATATACA	alt_5978_new	4	6	4	3	3	3	2	2	3	3
CATTCCGATTTGTACG	alt_5978_new	15	37	31	23	29	21	27	19	46	14
ACCCTTAAAAATTGTT	alt_5978_new	72	97	78	56	97	65	107	52	102	56
CAGCCGCGTTCAAGGT	alt_5978_new	30	151	56	50	163	30	154	62	159	45
TTTAGGTCGCATATAG	alt_5978_new	5	4	2	0	4	3	8	6	2	4
GTCTTTAGGTGCATCC	alt_5978_new	10	17	19	9	21	11	19	8	24	15
CTTCATGAGGATATCC	alt_5978_new	19	14	15	17	29	9	25	13	23	14
TGCATTTTCGGTCATC	alt_5978_new	0	0	0	0	0	0	0	0	0	0
CTTCAAGGGGGTATCA	alt_5978_new	0	0	0	0	0	0	0	0	0	0
TAGGCAGTCGCACTCC	alt_5978_new	3	3	5	2	5	7	11	3	7	1
ACATTAAATCCATCTG	alt_5978_new	74	105	99	76	111	71	97	78	127	48
GTTATCGCACTTGCCA	alt_5978_new	30	48	42	23	37	33	48	34	40	26
GACCGGGTGTCCTGAC	alt_5978_new	0	0	0	0	0	0	0	0	0	0
CAGAATGTTCGTTATT	alt_5978_new	0	0	0	0	0	0	0	0	0	0
GCAGTCTAAGTGGAGC	alt_5978_new	30	46	26	37	36	28	56	22	60	35
GCTCTTGGTGACGCTA	alt_5978_new	41	57	52	40	47	34	43	38	62	39
CCGTGATCGTCTGCCA	alt_5978_new	0	0	0	0	0	0	0	0	0	0
TAGTTCACCGTGCCGC	alt_5978_new	1	1	4	2	5	0	3	1	6	3
TGTGTTCGACCCGCCC	alt_5978_new	7	13	6	8	17	11	10	4	14	9
AGTTCCGCAAGCTGGG	alt_5978_new	5	5	10	7	9	9	12	1	14	7
AGGTTTTCGTGTCTAG	alt_5978_new	0	0	0	0	0	0	0	0	0	0
TTATTTCCTGATAATT	alt_5877_new	10	8	6	8	4	7	13	6	15	6
ACAGTCAGCCGCTTTA	alt_5877_new	0	0	0	0	0	0	0	0	0	0
GCCCCGTTGTACGGAC	alt_5877_new	26	43	26	25	52	31	50	24	54	17
ACCATGACTCCGGGAA	alt_5877_new	56	72	73	62	81	57	96	60	84	62
CATTTCTCTTGTCACC	alt_5877_new	82	100	89	68	100	79	117	64	114	63
GGTTCATCTTCTATCT	alt_5877_new	8	15	7	3	7	5	13	9	14	3
GCATAGGGTTTACAGT	alt_5877_new	24	45	31	26	45	18	32	23	36	18
CAGTCGGCCGCGTGTA	alt_5877_new	10	28	15	24	33	11	32	23	26	13
CTTTAATGCCATAAAG	alt_5877_new	0	0	0	0	0	0	0	0	0	0
GACGTTTCGTCCGTTT	alt_5877_new	2	4	9	5	5	9	8	2	9	2
TCTTTCATTTTTGATC	alt_5877_new	50	71	70	54	74	73	80	35	78	52
TAAGATTGGTTGTCAT	alt_5877_new	7	7	6	5	1	5	6	1	9	2
TTACCTTGATACTGAG	alt_5877_new	36	52	38	47	62	30	62	30	80	39
CGGTCTCAGGAGTTTT	alt_5877_new	35	33	36	23	54	34	56	31	48	19
AATTTGTGATTCTTCG	alt_5877_new	15	13	19	22	9	14	15	16	23	16
GGGGCTTATCAAGCCC	alt_5877_new	10	16	9	6	21	15	16	10	9	7
TACGGATGTCTGAGGT	alt_5877_new	36	46	42	53	52	44	50	45	60	40
CAGTTCAATCCTCGCT	alt_5877_new	12	20	15	18	26	12	19	9	18	18
GGTAAGACAGCGATAG	alt_5877_new	39	55	42	35	36	38	45	31	60	27
GGTCGGAAACCTGGTT	alt_5877_new	2	2	4	6	12	6	5	4	4	4
GGAAAATTGGGGGTCC	alt_5877_new	11	18	12	17	29	13	22	14	10	8
TTTAGTGTGTCTCCTA	alt_5877_new	44	49	46	32	48	28	46	29	56	22
TATCTTTCCTCGTATG	alt_5877_new	18	32	25	19	33	25	23	18	28	18
AGACTCACAACGTTTA	alt_5877_new	0	0	0	0	0	0	0	0	0	0
TTTTGCACCCTACTCT	alt_5877_new	10	14	10	10	14	4	12	7	12	5
TCACTTCTATAGCACC	alt_5877_new	1	4	2	0	0	1	2	0	0	1
CAGCACGAAATACAAG	alt_5877_new	14	31	28	15	28	15	38	14	32	9
CTCCTCACAAGCTTTT	alt_5877_new	2	3	2	0	3	2	4	3	4	1
CCAAGAAATCCGTGAA	alt_5877_new	12	13	13	5	22	12	26	9	19	12
TTTCTATTTGGTGTGC	alt_5877_new	0	0	0	0	0	0	0	0	0	0
GCCACGCGATCGGGGT	alt_5877_new	16	19	13	13	22	11	19	9	22	15
CGACAGCGGGACTCCG	alt_5877_new	0	0	0	0	0	0	0	0	0	0
AATACCTATTGCGGTG	alt_5877_new	48	81	44	54	76	44	91	34	76	29
GTGCGTGAGGAGTTTC	alt_5877_new	0	0	0	0	0	0	0	0	0	0
TATTGTCTAGAATACC	alt_5877_new	0	0	0	0	0	0	0	0	0	0
CTGAGTTGGCCTGTAA	alt_5877_new	26	44	33	29	38	32	43	23	44	22
TTCAGACTGTACATAG	alt_5877_new	0	0	0	0	0	0	0	0	0	0
GTTCGAGTGTAAGATA	alt_5877_new	0	0	0	0	0	0	0	0	0	0
TCGGGCGGTCGGGAAC	alt_5877_new	11	19	18	4	19	10	25	7	22	10
TTGTCTGGCCCAATTC	alt_5877_new	38	63	46	41	60	21	67	36	58	42
GGTCATTGTAGACTAA	alt_5877_new	2	3	0	2	4	2	0	2	4	1
CGGGCAGGGTGGTCGT	alt_5877_new	43	63	63	57	75	48	70	45	78	40
TGTGTTGCCTGGATTT	alt_5877_new	10	16	7	7	20	7	14	10	29	9
ACTCCCTAAGACCACG	alt_5877_new	0	0	0	0	0	0	0	0	0	0
TCGTTAAATGTAGGCA	alt_5877_new	42	58	43	36	67	48	68	37	64	47
TTATGGGGTGTGCCGC	alt_5877_new	20	39	25	15	13	24	26	19	31	12
GAATTTGGTTATACTC	alt_5877_new	38	56	49	37	45	29	72	44	53	30
TCGTTTCCGAATTTTG	alt_5877_new	0	0	0	0	0	0	0	0	0	0
TAGGCATACTCCGTCA	alt_5877_new	12	19	10	6	17	19	23	14	21	9
GGTATAAACCACGTCA	alt_5877_new	279	403	369	327	406	300	425	246	426	297
CGCGCTAAGTTGGCAT	alt_5877_new	42	72	37	52	81	39	69	27	92	40
AATCGTTGGAATCCAA	alt_5877_new	24	53	42	29	40	30	56	31	53	21
TGTTCGGCCGACTTCT	alt_5877_new	5	11	10	4	14	12	14	9	19	15
GGATTCGGGTGGTTTG	alt_5877_new	26	72	58	39	79	43	68	37	66	39
TTGATTGTTCTCGGGT	alt_5877_new	15	21	22	17	34	10	24	19	24	9
GGCTTGATACACCTCA	alt_5877_new	0	0	0	0	0	0	0	0	0	0
CCTTGTGTTGGGCATA	alt_5877_new	20	39	25	19	37	18	53	14	44	18
TGATTTGAGTTATCTA	alt_5877_new	14	14	15	9	26	9	13	10	19	9
TTATTTTGATTCGCCT	alt_5877_new	48	65	55	27	58	43	56	37	76	40
TCGGAGGACACTCCTC	alt_5877_new	16	34	23	14	34	13	45	16	34	18
ATTTTATGCGTGATTG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TTCGTCCTACCCGCCC	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TCTCGCGGTGAAATCT	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TGGGGGTACTAGGACG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
ATCTGAGTAGATTTGT	ref_4381_missing	5	6	7	3	11	1	14	4	8	6
AGACTCAGTTGAGATG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CATCAGCTTTTGTTGT	ref_4381_missing	1	21	4	2	20	3	26	7	15	3
CATGTGCGGCACATAA	ref_4381_missing	18	45	19	26	46	19	65	26	48	19
TTATCGAAGGTAGATT	ref_4381_missing	0	3	0	0	0	0	1	0	0	1
GACCCTGGCGTCACAG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CGCACCGTGTTACGGG	ref_4381_missing	5	19	4	6	12	1	12	3	26	5
AGCTTGTCCCCCGGGA	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CGGTCTAACCGCTCTC	ref_4381_missing	1	3	1	1	6	1	5	1	1	1
CTTTGCGCCGGTTCGC	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
GGAGATACACTACAAG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TAAAGGCCCCTTGCCT	ref_4381_missing	7	18	10	8	26	7	17	8	9	9
TCCTACCATTACACAT	ref_4381_missing	3	16	5	2	7	0	3	3	13	3
TCGGCAGAAGACCCGG	ref_4381_missing	17	26	13	9	38	9	38	11	31	10
CCGGGGAACTAGAAGC	ref_4381_missing	7	30	15	13	35	12	31	8	30	7
CTGTGTGTCGTAACAT	ref_4381_missing	8	9	7	4	10	9	20	5	15	7
CGGTTTTCCTTCTGTT	ref_4381_missing	8	56	12	15	33	14	34	11	47	9
TCGCGGACTAATGAAA	ref_4381_missing	0	6	1	7	8	5	7	2	4	0
CTGCTGTTCTATGTCG	ref_4381_missing	5	22	6	1	13	8	18	1	19	3
TGTCTGCTCTTCTGGT	ref_4381_missing	2	14	4	3	10	3	13	5	4	0
TCTGCGGAGGCCAGAA	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
GTTGCGCAGCAGTCGG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CACATATAATCGATTA	ref_4381_missing	3	10	6	2	14	4	15	4	12	5
AATCTTAGATACAGGT	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CCAACTTCTGACTAAG	ref_4381_missing	4	39	5	6	40	3	27	5	33	7
GTTTATTCAGGGTTGG	ref_4381_missing	1	3	1	0	0	0	0	0	8	0
CACTCGCCCGCGTTGC	ref_4381_missing	0	1	0	0	3	0	1	0	5	1
CTTCAGCGAGACGAGT	ref_4381_missing	3	18	14	11	24	6	22	4	19	8
TTTATTGCGTCTTTGT	ref_4381_missing	11	6	4	1	12	6	7	2	18	4
ACTTACATGCGCACCC	ref_4381_missing	18	27	10	8	32	11	29	7	26	14
CTGATAGTTTTGTCCC	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TCAGTATCGCCTCAGC	ref_4381_missing	0	4	3	1	5	2	7	0	2	2
CATATCTCGTCGCACA	ref_4381_missing	1	0	0	1	0	0	5	1	3	0
GGGCGCGCACATGTCC	ref_4381_missing	16	46	21	21	44	14	42	15	39	24
CTACAGTAGCCTGCTG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CGTCCCTCGGAGCTGT	ref_4381_missing	5	25	7	6	20	2	21	3	17	9
TTTGCTCGCAATGGGC	ref_4381_missing	3	15	4	7	8	6	9	0	6	1
TCCACCGTCGTAGGAA	ref_4381_missing	2	5	1	1	10	2	10	2	11	0
TCTATATAATCAATGT	ref_4381_missing	4	8	10	8	19	8	16	6	14	2
GCGTGCACCTTGTTTT	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TCATGAGAGTGGTCGA	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CATACTCGGCTTCATA	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TACTCTGGCCGCAACA	ref_4381_missing	13	37	22	23	63	24	53	14	51	13
GGTTGTTAATGCAGAT	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CCCATACTTACCTAGG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CGGAATTTCCGCGGTA	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
ATTTAATTCATCTCAG	ref_4381_missing	3	8	6	1	15	4	10	1	10	3
GGGTAGTAGAACCCAG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TTGCACAGGCATAGGT	ref_4381_missing	9	27	9	4	16	4	13	5	30	7
TGTTCGTACGGTTTCA	ref_4381_missing	0	1	0	0	0	0	0	0	0	0
GTTTTTTCAACCGTGA	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
CCATCTCTGCATACTT	ref_4381_missing	5	25	6	4	32	5	36	4	14	2
ATGGGTCCCAATTTGG	ref_4381_missing	3	12	7	4	14	2	14	4	14	8
TCGCGATCGCTTTGTT	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TAAGAGTTTCTGGGAT	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
GTGAACAGCTATTGTA	ref_4381_missing	6	13	9	3	8	3	15	4	16	7
TGGGGGTGCTAGGACG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
ACACCTGACTGTGTTC	ref_4381_missing	2	10	6	2	10	3	9	1	12	3
TTTAGTGTCCTAACAA	ref_4381_missing	3	19	8	10	20	14	8	12	21	0
TCTCCTTTCTAGTACG	ref_4381_missing	4	2	0	2	0	0	1	0	0	0
TTGGGGCCGCGCTACG	ref_4381_missing	9	19	18	13	19	12	21	7	25	13
TGCACCCCCCCACTTG	ref_4381_missing	0	0	0	0	0	0	0	0	0	0
TCAGTTTCCTGGCACA	ref_4381_missing	4	16	3	4	19	7	9	4	14	2
TTGAGTATCTCATTTA	ref_4381_missing	6	12	7	5	19	5	10	4	12	4
GCAAGTTAAGTCGTCT	alt_124_missing	38	52	50	42	77	32	67	39	62	34
GAAAGCCACCTGTTAG	alt_124_missing	0	0	0	0	0	0	0	0	0	0
TTAATTCGTGTTCACA	alt_124_missing	3	10	9	4	9	6	14	1	9	1
GCACGTTCATTGCACG	alt_124_missing	19	60	23	15	68	24	49	24	64	21
ATGGCCGGTGCGTGGC	alt_124_missing	1	4	4	1	3	10	4	0	6	2
TGTCACGCTCCACGAC	alt_124_missing	23	39	33	27	44	24	44	28	51	19
CTGCCGTCTTCCTCTG	alt_124_missing	0	0	0	0	0	0	0	0	0	0
CCCCTGACAGGTATCT	alt_124_missing	3	31	4	3	43	2	27	3	45	2
CTCCCCAGGTACAATG	alt_124_missing	1	13	2	2	8	2	21	1	11	2
GAAATGTTAGATTTGT	alt_124_missing	8	10	7	4	13	7	13	1	10	5
AACCTAGGTCCTGTTT	alt_124_missing	35	32	40	43	28	38	21	38	48	33
ACTGAGCACCTACGGT	alt_124_missing	96	136	122	124	134	98	167	87	145	92
GAATTCATATACATCC	alt_124_missing	21	40	28	29	24	25	37	25	33	21
GAATCAGTATTAAAGG	alt_124_missing	13	29	10	13	25	14	22	14	35	14
GTCCCTCCGGCACAGT	alt_124_missing	0	0	0	0	0	0	0	0	0	0
TTGTAAGCGCTCTAGG	alt_124_missing	116	168	134	77	119	81	141	100	145	94
GGAGTTTCACGTAGAC	alt_4802_missing	5	8	1	2	12	10	16	6	12	9
TTGCTACTATGAGGAT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
AGTTTATGTCTCCACG	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CGAGGTCTTATTTTTG	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
TCCTTTGCGTACGCCA	alt_4802_missing	0	4	3	0	2	4	2	1	1	0
ACAAATAAATTTATCT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
AATATTAATAGGTTGA	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CTTGCGTGCTCTGATA	alt_4802_missing	4	6	2	0	13	3	6	3	6	0
TGTGCCAGCATTCAAC	alt_4802_missing	19	33	31	30	43	19	54	12	53	11
TGACATGTCTTTCTCA	alt_4802_missing	5	15	3	9	12	9	14	8	29	15
AAATAGGGCAAGAGGG	alt_4802_missing	4	7	5	8	16	8	9	5	14	13
CATTTGCATCTCATAC	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
GCAATCTTAAGGACCT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CTACCGTGGGGCTTGA	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CGTGCGCGTTAGCTGT	alt_4802_missing	2	3	1	4	6	2	3	5	6	5
GTGTAAGCTCTCTCGA	alt_4802_missing	5	14	9	4	7	7	7	7	13	8
ACGCCTGTTAGTGTCC	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
ATTCACATCGGATTAT	alt_4802_missing	20	37	22	21	41	10	29	20	44	18
CGCTCGCAGTTGGGGA	alt_4802_missing	1	2	2	2	0	1	2	1	1	0
ACTCAGAGTTTACCAG	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
TATCACCGCGGGGAAC	alt_4802_missing	13	21	7	3	13	2	16	6	17	5
TCGAAGTCTTAGTATC	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
GTTATCAATACCCTTC	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
AAGAAAGTCTCGATCT	alt_4802_missing	2	10	7	2	7	4	10	3	6	1
CGACTGTCAATGCAAC	alt_4802_missing	3	15	8	5	11	10	9	5	17	6
CGCTGTGCGATCAGGA	alt_4802_missing	5	13	20	14	21	10	27	15	15	13
TATGTCAAATAGTCTT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
TGTATCGGATTCAACG	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
GACCGGACACCTGGTT	alt_4802_missing	5	13	4	3	13	4	6	8	7	7
TAGAGGAGGATCCTGT	alt_4802_missing	5	11	7	4	4	6	4	1	15	7
GGTAATAAAGGCATTT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CGGTCACTCCCGTGGA	alt_4802_missing	4	30	5	7	24	4	22	5	18	1
CCTAAATCTGGAGTTT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CTCGGCTATCCAGCAC	alt_4802_missing	8	52	14	9	55	13	51	14	37	9
TTAGGTACCCAGAGCT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
GTATAGAATGGTTGTC	alt_4802_missing	8	10	10	13	16	5	16	9	17	8
CTGCACGTTTCAGCTT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
TAGCAGCGCTAAGGAG	alt_4802_missing	29	43	24	31	43	26	52	19	45	29
CCTGTTGACGGCCAGC	alt_4802_missing	2	22	12	7	27	3	24	4	28	8
GGTTGGGGAAGAGACC	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
GTCGGAGGAGGTTCCA	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CTGGCGTCACGCTAGT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CCCGACCCTTAACCAC	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CATTGGTGGACCTAGC	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CACGCACTGTCTAACA	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
CGGGGCAGTCGCGTTT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
TCTCCTGTAGCCCCCG	alt_4802_missing	48	76	40	62	58	39	50	26	76	33
GAACAGTCAACCCCAT	alt_4802_missing	0	0	0	0	0	0	0	0	0	0
GCCTGGAATCGTATTT	ref_4300_missing	25	45	25	26	53	28	64	17	72	24
TGAGCTTAATGGGTTC	ref_4300_missing	3	9	10	8	5	6	15	7	13	6
TGGTGTAGGGTTCCCT	ref_4300_missing	12	19	11	8	23	17	21	10	15	9
TCCGGTCAAGAATCTG	ref_4300_missing	4	5	1	1	9	0	4	1	9	0
AGGGATCTTCCCACTT	ref_4300_missing	28	49	29	23	33	20	49	22	32	22
CAGTTAACAGTGGGCG	ref_4300_missing	1	3	0	0	12	0	3	0	3	1
GCTACCCGCGCAATAT	ref_4300_missing	0	0	0	0	0	0	0	0	0	0
ACATGTCATCTGCCAA	ref_4300_missing	3	6	3	2	3	1	9	2	10	1
GCTAGTTCATTTTGTA	ref_4300_missing	13	26	8	13	28	10	29	10	25	11
ACGATTGTTTTTTGTT	ref_4300_missing	111	110	115	106	109	100	125	76	142	96
TCAATCATGGATTATG	ref_4300_missing	18	20	15	12	18	8	11	16	18	8
GCAACCCGACGGCACC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
AAACACTTTCAGCTGC	alt_3434_missing	3	2	3	1	9	2	6	4	2	2
AACTATATCGCTGCGT	alt_3434_missing	2	0	1	1	2	1	4	0	0	0
AGCGATGCGACAGCCG	alt_3434_missing	3	5	1	1	6	2	2	1	4	1
TTGGTCTCCTCAGTGT	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
GTTCCATACCTAGGAC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
ACTGGGCCTACTATTG	alt_3434_missing	3	4	4	5	3	3	5	2	6	2
TTTATCGGGTCGAAGG	alt_3434_missing	0	1	1	0	1	0	0	0	1	0
CTTCCGGTTCTCATCA	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
ACTTGCACCTCCGGTG	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
CCCCGCTAAATGTCAG	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TTATACACGCTTCGCA	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TGTACTTCTGTATTGC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TTGCTTTCCAGGTCTA	alt_3434_missing	11	15	18	3	13	8	13	6	13	11
ATGTAATATGCACGTG	alt_3434_missing	3	7	3	3	3	3	4	1	4	3
ACGCGCTCTTAGTGCC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
AGTGAGCAGGGTCCAT	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
CAGCTCTTGCGTACGA	alt_3434_missing	1	0	0	2	0	0	1	0	0	0
TTGCTGTCGAAAGGTA	alt_3434_missing	11	13	8	10	13	4	16	9	12	7
TGGCCTTTCCGTTTTG	alt_3434_missing	4	6	3	7	3	0	4	7	7	1
TAGACCACAACTTTTG	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
CGCGGATCACTGGAAG	alt_3434_missing	1	1	2	1	4	0	2	0	2	1
AATTAGGCGTAGTGTC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TCCATTTCAGCCGTTC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
GTTCACGGCGGCCTCC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
GTTCCTTTACACCCAT	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TCAGTGTGGTGCGGCC	alt_3434_missing	1	1	1	0	0	1	2	1	3	2
ATGCGCTGCACTCTAC	alt_3434_missing	4	3	0	1	1	2	2	1	0	1
GCCAAAGCAGACATAG	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TTTCCGCCTATTTTTC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TTAGCCGGACCCCCGG	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
ACCCTAAGCGGTAATC	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
ATCAAAGGAGTCGCTT	alt_3434_missing	4	6	3	10	9	4	5	5	3	7
TCATGACAAAGGTTAT	alt_3434_missing	2	3	4	5	1	0	3	0	3	2
TTAGCCCTGACCAGAG	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
CACGGTTCCTCGCTTT	alt_3434_missing	0	0	0	0	0	0	0	0	0	0
TAATGTCCGGTGGTCT	alt_3434_missing	3	11	2	10	10	8	12	5	10	7
ACTGGTATAGGTGTGA	alt_6080_new	28	9	33	13	15	21	29	18	22	19
GTGTCCTCGTTCGCGG	alt_6080_new	24	12	26	27	14	23	15	32	22	16
TCGTAGTGGCTCAATC	alt_6080_new	38	34	51	45	31	51	40	58	37	43
GATTAACTGTGCGATC	alt_6080_new	0	0	0	0	0	0	0	0	0	0
ATGGCCCTAAGTGTGA	alt_6080_new	35	19	27	32	25	42	26	24	27	28
TCCCATAGAGGTGTCA	alt_6080_new	42	56	44	45	73	41	82	35	74	31
CGATTTTGCTAGGATA	alt_6080_new	0	0	0	0	0	0	0	0	0	0
TTAGTATTGTTTGTAC	alt_6080_new	97	104	98	94	110	80	137	86	98	90
ACTAGAGTTGCTAGAT	alt_6080_new	58	46	72	63	55	54	34	50	52	39
TTTCAAACAGGCCTAT	alt_6080_new	10	6	20	14	12	11	17	8	9	16
AGAGTTCGGGTGTACG	alt_6080_new	19	30	28	31	24	22	13	27	13	23
TGCCAGTATGCACTTA	alt_2099_upstream	77	95	107	62	58	79	67	76	75	65
GCCCTACCTTGGTTTC	alt_2099_upstream	82	136	132	88	159	97	140	63	146	89
TCCTCAGTTAACCGCT	alt_2099_upstream	0	0	0	0	0	0	0	0	0	0
TATAGACCTACATAGC	alt_2099_upstream	4	9	1	7	6	2	2	5	8	2
GAAATGCTAGGTCGTG	alt_2099_upstream	0	0	0	0	0	0	0	0	0	0
ATAGCTGGCTCACTTG	alt_2099_upstream	33	22	30	27	30	25	24	16	29	15
CTCTCGGTGACGAGGC	alt_2099_upstream	24	20	23	19	19	39	15	20	22	21
TAGCGTAAGGTTGGGT	alt_2099_upstream	24	25	29	21	21	16	20	11	20	17
TTTTTGTATGACGATA	alt_2099_upstream	0	0	0	0	0	0	0	0	0	0
GTGCTTCTACTGAGTA	alt_2099_upstream	87	109	104	64	104	70	109	68	106	60
GCGGGATGCTCGGGTC	alt_2099_upstream	11	4	14	6	14	6	6	8	8	7
CGTTAGTATGTGAGCT	alt_2099_upstream	200	178	238	188	160	166	165	204	199	195
TCGAGACGCTTGCTAG	alt_2099_upstream	0	0	0	0	0	0	0	0	0	0
AGGTAGAAACCGGCTA	alt_2099_upstream	0	0	0	0	0	0	0	0	0	0
GATGCATTACTTTTCG	alt_2099_upstream	0	0	0	0	0	0	0	0	0	0
GACGATGCGATTACTG	alt_2099_upstream	47	30	65	36	44	61	36	45	52	37
CTAGCCGAAGTTCCTA	ref_5842_new	0	0	0	0	0	0	0	0	0	0
CCCTTATCTCTGACCG	ref_5842_new	0	0	0	0	0	0	0	0	0	0
CACAAGGAGCATGGTT	ref_5842_new	0	0	0	0	0	0	0	0	0	0
CTCCTCTAAGTCTGCA	ref_5842_new	0	0	0	0	0	0	0	0	0	0
CGCGGACTCTCTTAGC	ref_5842_new	23	31	39	26	32	36	34	38	42	27
ACTCCGAGTTACTCGA	ref_5842_new	6	3	2	0	4	2	1	1	8	1
TGACTTATTAATAATT	ref_5842_new	37	59	36	50	59	32	58	31	74	45
CATAGGCCGTCCAGCT	ref_5842_new	11	30	28	19	31	21	31	13	30	13
CAACGGCAGTCCACAT	ref_5842_new	0	0	0	0	0	0	0	0	0	0
GCCGTCAGTGCAGGGT	ref_5842_new	5	28	5	8	11	6	15	6	12	3
TCTTGTCGATCTGGGG	ref_5842_new	0	0	0	1	1	1	2	0	1	1
CTCAACTTAGTCCCCG	ref_5842_new	33	84	50	32	90	50	74	34	96	44
TTCATGGTATACCGTG	ref_5842_new	3	11	14	8	22	22	38	18	21	14
AGGTGTCCACGGGAGA	ref_5842_new	5	5	3	5	5	1	5	4	4	6
AGATAGTGTTAATCCT	ref_5842_new	0	0	0	0	0	0	0	0	0	0
ATTCGCTGTTTGCACT	ref_5842_new	0	0	0	0	0	0	0	0	0	0
GTTTATATCGCTTAGA	ref_5842_new	0	0	0	0	0	0	0	0	0	0
ATGTTTCTGGCTATTC	ref_5842_new	0	0	0	0	0	0	0	0	0	0
GGGGCTTCTGCCTCGT	ref_5842_new	14	8	8	9	4	7	16	6	17	10
TCAGGGTACCGGTTCC	ref_5842_new	0	0	0	0	0	0	0	0	0	0
GCCTCGCTTTGAGTTC	ref_5842_new	0	0	0	0	0	0	0	0	0	0
GCGTGTTGAAGGAAGG	ref_5842_new	0	0	0	0	0	0	0	0	0	0
TCGCTACCGTATCCTG	ref_5842_new	0	0	0	0	0	0	0	0	0	0
CAACTGGTTTCTCGCA	ref_5842_new	0	0	0	0	0	0	0	0	0	0
TGGTTGTGGTTTTCAA	ref_5842_new	0	0	0	0	0	0	0	0	0	0
TTTTAGCTCGTCATCA	ref_5842_new	31	27	35	14	20	17	28	17	23	23
ATATGCATTACGGTGG	ref_5842_new	38	45	42	32	52	30	66	23	77	34
GGTTTCTAAACGGGCT	ref_5842_new	14	15	10	10	15	8	20	9	17	7
CTGATCGTCGTATTAC	ref_5842_new	0	0	0	0	0	0	0	0	0	0
TCTGTACGGATAGGTC	ref_5842_new	16	36	19	9	20	15	20	9	16	23
CCCACTAGGGCATTCT	ref_5842_new	32	66	37	32	51	46	62	40	57	34
CGTGCTCACCCTCTCT	ref_5842_new	12	14	13	13	11	17	14	12	14	8
TTGATTCAGCTATTTC	ref_5842_new	0	1	0	1	0	1	1	0	0	0
CGCCCTCCAGTACCTT	ref_5842_new	0	0	0	0	0	0	0	0	0	0
TGATCGCGATGCAAGC	ref_5842_new	10	10	14	3	15	12	8	10	17	9
GAGTTAGGGGCGGACA	ref_5842_new	14	19	22	12	30	13	24	14	23	14
TTGTGCTCTTGTTGAC	ref_5842_new	15	28	16	12	16	19	15	6	24	4
CGCCTGTTGAAATTCC	ref_5842_new	0	2	0	3	2	0	3	0	7	0
CACTATATTCCGTCCA	ref_5842_new	0	0	0	0	0	0	0	0	0	0
CTAGACGTCCCCCGAA	ref_5842_new	0	0	0	0	0	0	0	0	0	0
AGTAACCGCTTTACGA	alt_3378_missing	1	6	0	3	2	2	2	1	2	2
GTTTAGTAGGTGAACA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TTATCTCTTGTTGCTT	alt_3378_missing	26	19	25	5	25	19	24	17	26	26
CGGAGGCGAGTGAGCC	alt_3378_missing	7	14	11	9	10	9	12	10	13	3
TGTTAGCTCCGGCCCC	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TTTCGTTCTTCCTTCC	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AAGGCTACTAGTTGAT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
ACTTCATAGTAAGTGA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
GACTCCTAAGCTGACG	alt_3378_missing	6	6	5	2	1	4	7	4	4	4
TGTTCCTGCTGGGCCA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
CCAGCTCCTTGTGTTT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AGTGAGCAGAAAGGCC	alt_3378_missing	9	10	19	13	14	13	20	9	25	6
GCGGCGAACTGATACG	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AGCTCGGTTCATACAT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
CTCTTGGTCTGGAAAC	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TACCATTGGGCTCGGC	alt_3378_missing	4	6	6	5	9	10	12	10	10	7
AGAGGTATCTTCTCGT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
CCCTGTTGCAGTAAGA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AGTTGGTACTATTCCA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
ACTGCTGGAGTAGTGT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TACTTTCATTGTCTTG	alt_3378_missing	13	15	15	6	20	5	30	9	17	11
TATTTTTGATGTGTTA	alt_3378_missing	0	0	1	0	0	0	0	0	0	0
ATATGATGGATGCACG	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AACCTACTCCGCAACT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TCCCAGTTTGCTAGTT	alt_3378_missing	1	7	3	4	12	5	12	4	10	1
CTGTGCAAAGGGCTTA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
CATACCCAGTTACGAA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
ATGTACGGGTGAATGT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
CTACGTTTGTTCTGCG	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TTCTCTTTATACTTGA	alt_3378_missing	6	6	9	4	16	8	11	5	16	7
TCCGCCTCGGTAAATA	alt_3378_missing	14	35	20	14	29	21	40	19	40	18
AGTTAGTATTGGAAGG	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AAAATGGGGGCATTTC	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
GTTGGATCATTCCGGT	alt_3378_missing	11	9	9	11	10	6	15	8	18	12
AAGTCAATACTGGACG	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
ACATCATTATTAACGA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TGAGGATTAGTTTGTT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
GGAACCAGCACGTCAA	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AGCATCTAGAACAGTT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TGGCACTGATGCGGTG	alt_3378_missing	5	7	6	3	8	1	6	4	11	5
GAGGGAAATGCGTCCA	alt_3378_missing	2	9	1	2	7	4	7	1	5	1
GTAAGCAGCAGGCCCC	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
ATAGAATGATTGACCG	alt_3378_missing	12	26	16	15	22	16	30	15	20	11
CTGACTTATTCAGATT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
CATGAGATGGGTAGTG	alt_3378_missing	0	3	3	3	2	0	3	3	1	1
ACTGTAAGTTTATTGC	alt_3378_missing	20	46	29	31	31	23	33	14	37	20
GCGGGACTCCTCTTGG	alt_3378_missing	14	21	4	4	17	10	15	12	13	5
TATGCATTTTTGAAGC	alt_3378_missing	4	8	3	2	5	2	9	1	4	3
TCAACGCCATCTTATC	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
GTTAGCACTTCGGAGC	alt_3378_missing	5	13	7	3	18	2	17	6	20	5
CCGATCTAGACTGCCT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
CCCGCACCGACTTTGT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
TTGTTTGTTTTTGTGT	alt_3378_missing	0	0	0	0	0	0	0	0	0	0
AGGTTCTGTTATGCAC	alt_3378_missing	13	47	26	28	50	20	52	16	40	28
GTGTATTGGTAAGGTT	ref_1395_missing	2	0	1	0	1	0	1	0	2	0
AATTCACCCGTTTGCA	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CATGGTTCGGCCTTGT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
GAAAGAAAGTTGGATG	ref_1395_missing	14	21	5	6	30	13	26	4	34	7
CGTATATATGCAGTTC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TTATGTTCCGCCTGCT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TCGCTCGGCGTGAAAT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
AAGTCGTGGCGCCGGC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CGAGGACTCCCTATCC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
GCGTTGATCCCTACAG	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CCTGTCGGTCCCGTGA	ref_1395_missing	4	9	1	1	5	2	4	2	3	0
CTGCATCACCTCTGGA	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CGCGTTTTGACCCAAA	ref_1395_missing	4	19	10	11	6	5	15	5	15	4
TCGCCCGGAATCCGTA	ref_1395_missing	4	1	2	3	2	2	6	2	1	0
TTTACATCTTTACTGG	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CATTTCTTTACACGAA	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
ACCGGTTAAGCGCATG	ref_1395_missing	5	9	4	5	10	4	7	2	16	6
CTTCGTCCTCGGGGGT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
AGTGGTTCCGTATCGT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
AAGGCTTAGTGGTTAC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TTCTCACACCCGCTCC	ref_1395_missing	2	4	3	1	2	3	3	0	0	2
GATGACGTGTCTGAAG	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
GGTCAGGTTTGTGCGA	ref_1395_missing	1	5	1	1	5	2	5	0	10	1
CAGTTAAATAGAGTCA	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
ACGCGAACTCTAGAAC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
AGGACGGTTCGGACAT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CCTGCTACCGCACTTA	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TTTTTCACAGTGCTTA	ref_1395_missing	10	24	10	8	30	9	21	21	18	16
TCCTGTTGTCATCGCT	ref_1395_missing	8	19	3	10	20	9	14	10	23	4
GAGTATGGGTTCTGTG	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CTGTCAAAGTAGATTT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TTGCGGTCAACCTTCC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
ACGTCGGCCGGGTTCG	ref_1395_missing	11	10	12	4	23	4	23	6	14	5
AGGCTGGAAATATTAG	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
GCCTTGAAGTATGTAT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TTTAAACGCAAGCACC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CCTTTCGCCGCGAGTC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CTACGTATCCATCAGC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TGTATGTATCGCGCTA	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CGTATTAAAGGGAGGT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CCTCGGATTCCATCTC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
AAGCACTTTGGCTCGT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
AAGTTTCAGGCGCTGT	ref_1395_missing	0	7	0	1	5	2	5	5	5	2
CCTCGGGTAGCACATT	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
ATTAAGCTTTAGGTCC	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
TCCTTGTGGAGCTCAG	ref_1395_missing	0	0	0	0	0	0	0	0	0	0
CGACCGTTCTCAATCC	ref_3600_missing	0	1	2	1	1	0	2	0	0	1
TACAGGTATGTTAATG	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TAATAGACATGCAACT	ref_3600_missing	11	9	13	6	8	3	15	4	5	6
TGAGGCATTTGGTCTC	ref_3600_missing	14	6	7	3	12	5	5	4	7	5
TTCCAGTCTGCAAGAC	ref_3600_missing	96	105	104	77	102	78	109	88	127	69
ATGAGTGAAGTTCGTT	ref_3600_missing	3	1	3	3	2	6	2	4	3	4
CAGATGTATGCCCCTG	ref_3600_missing	0	0	3	1	5	0	4	0	6	2
TCCGTTATTTTGCGCG	ref_3600_missing	11	14	20	6	8	7	14	3	9	5
TTAGATGCCTGCAAAT	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
AACGGAATTTCGCATT	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TTGAGATGCCAGGCTT	ref_3600_missing	56	55	68	29	57	41	70	33	56	40
TCACGAGCCACGCTCA	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TTCGCCTTCAATGGTT	ref_3600_missing	31	29	44	39	45	37	48	29	56	43
TTAACATCGGCTCAAC	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
CTGTGTGGTGCGTCGA	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TTATTACTGCTCTGGG	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TTGCCTGGATAGGCTT	ref_3600_missing	15	22	18	15	24	13	23	11	22	12
TCCTACAATAACATTC	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
ACTATCACTGGTTTAT	ref_3600_missing	43	47	40	47	53	28	58	30	56	36
ACTCGCGGCGTTTCTT	ref_3600_missing	4	5	10	7	5	6	6	5	5	6
CTGCTTGGCTTACAAT	ref_3600_missing	6	5	18	5	3	15	16	6	19	16
CCAATTTCCGGTTTAC	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
GCCCTGATGATATCGC	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TACGCAGGTTCCTCGC	ref_3600_missing	18	20	29	27	34	14	46	18	19	30
GGATATCTGGTCCCTG	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TGTTGATCAGTATCTA	ref_3600_missing	10	17	21	17	21	15	24	15	22	12
ACATTCCACGTTGCTC	ref_3600_missing	21	38	26	13	22	14	35	20	42	12
CACATTGTTTGATTAC	ref_3600_missing	5	0	4	3	6	4	8	2	8	7
TGATTTCGATCTTATC	ref_3600_missing	12	16	23	12	16	8	16	12	17	9
ATCATTAAGCGAGTTG	ref_3600_missing	6	4	5	4	5	6	6	1	6	8
TGCTTTGACCCATCCA	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
AGTCTGTGACAAGCGT	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
CTCAATTCCCGGTCTA	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
GCGGCTCCTCAGTTAT	ref_3600_missing	33	28	23	20	29	18	47	34	33	30
GGGCGTCATGTTCCAA	ref_3600_missing	7	12	13	12	7	3	19	9	7	7
GCTTCTAACTCGAAGA	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
AGCGAGTCCATTGGAA	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TTGCCTTTACCATCTC	ref_3600_missing	6	5	5	12	6	5	10	8	7	9
TCTTCTCCTGGTTAGG	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
GGAGTAAGCGTATTAC	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
CTTTGGTTAGGTCTGA	ref_3600_missing	73	101	63	62	92	72	107	63	79	42
CATTCAGCAGGCGCGT	ref_3600_missing	9	24	8	13	14	11	15	9	21	9
TTCGTGACGATAAACT	ref_3600_missing	13	14	13	5	15	8	10	8	12	9
TTTCGATAGTGTTTTG	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TGTATGTGCTGCACAG	ref_3600_missing	9	10	16	11	14	4	17	7	13	12
GTAGAAGAAGTGTGCA	ref_3600_missing	0	0	0	0	0	0	0	0	0	0
TCCCGTAGAACACCGC	ref_4864_missing	0	0	0	0	0	0	0	0	0	0
AGGCGTGCTCGTTCCG	ref_4864_missing	42	43	55	31	42	38	50	23	41	33
TATATGTTGAGATATT	ref_4864_missing	46	89	81	67	73	63	91	52	92	48
TTGGGCAGGTAAAAGC	ref_4864_missing	0	0	0	0	0	0	0	0	0	0
AGACTCCTTCTGCCTT	ref_4864_missing	11	29	15	16	35	10	25	7	26	10
TGCGGGGAACTTGATC	ref_4864_missing	0	0	0	0	0	0	0	0	0	0
ACGGGCTCAAATGCCC	ref_4864_missing	164	251	207	171	263	172	279	202	284	174
TACTTGCCTCGTGCCG	ref_4864_missing	0	0	0	0	0	0	0	0	0	0
TAAATCGCTTACCCTT	ref_4864_missing	2	19	2	3	25	4	9	1	13	2
ATTTGCCTTTTACTAG	ref_4864_missing	23	29	29	19	31	21	40	14	33	25
ATTGCGACACCCTTAT	ref_4864_missing	47	64	43	40	64	37	68	45	69	42
TGGTCCAAAGCTACCG	alt_5664_new	15	25	14	7	23	15	31	7	29	11
GGCCACATATCCGTTT	alt_5664_new	4	6	3	5	10	0	11	1	13	1
ATCGATCTTTGGTAGT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TTACTTAGGATACGCA	alt_5664_new	21	47	31	24	45	20	61	21	40	20
GGCGGCAACCAGCTAA	alt_5664_new	49	62	49	46	74	49	83	45	74	39
GAGGTTTGACATGGGC	alt_5664_new	2	5	2	2	3	2	3	1	10	3
ATGCAGGTTGATTGCA	alt_5664_new	0	0	0	0	0	0	0	0	0	0
CCTTTTTTGTGATATC	alt_5664_new	0	0	0	0	0	0	0	0	0	0
CTACTTGGTGTCTTAT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GTTCGGTACCCTTTGT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GGCCTCGATTCTAGAA	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TTTTATTGCGAGCCTC	alt_5664_new	5	25	10	9	10	1	18	9	23	4
TTGCCTTTGTAAATGG	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TTTCAGCATGTTCGAC	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TTAGGAATCTGTGTGT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TTGTCTTAACTTGGTT	alt_5664_new	14	19	10	18	29	24	23	11	24	14
CGAACAACCGTATTTG	alt_5664_new	7	27	6	6	21	13	22	9	15	9
ATATATCGCCTGGTCC	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GTAAGGTTTCCAAGTT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
CTTGCTTCTCGGACAA	alt_5664_new	0	0	0	0	0	0	0	0	0	0
CCGACAGTATTTGTAA	alt_5664_new	2	8	1	0	6	2	14	5	15	2
GTAAGTCGGCATAAAA	alt_5664_new	15	37	20	15	30	24	36	18	41	10
CTTACTGTCAGTCCGG	alt_5664_new	0	0	0	0	0	0	0	0	0	0
CTTCCATTTATGGATG	alt_5664_new	5	6	1	7	9	4	5	3	5	6
ACCGGTGTCAGCCCAT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TCATTTGGCTTTTGAA	alt_5664_new	12	25	21	11	36	17	38	16	29	9
CGGTCTTGCCGCGTTC	alt_5664_new	0	0	0	0	0	0	0	0	0	0
CATTCCCCTATTTCCC	alt_5664_new	3	9	6	5	15	5	10	2	10	5
CACCCAGCTACTCGTG	alt_5664_new	2	1	2	0	0	0	0	1	0	0
GAAACTTGCTTTATCA	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GCTCCGGTGGTTTCTG	alt_5664_new	1	6	5	5	8	4	6	2	10	2
TTTATCTCGGTTCTGT	alt_5664_new	8	23	22	8	22	8	22	6	23	6
CTCGGGTGATAAAGAC	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TTGCCTTTCTTGTAAG	alt_5664_new	9	16	18	8	21	8	19	7	21	8
CCTTTGCGGGGTGCCT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TACACTGTCTCGTCAT	alt_5664_new	0	0	0	0	0	0	0	0	0	0
TAATGCGATTCTGTCA	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GTCAGTTTTGCTTGGT	alt_5664_new	2	10	3	4	10	9	16	12	17	7
GACCTGCAGGGCTTAC	alt_5664_new	8	9	7	3	17	4	10	9	7	7
ATAACTCCGCAGGCTC	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GAAACGAGGCGGTCCC	alt_5664_new	2	1	4	0	1	1	0	1	1	1
TTCAGCTTCTGGTCCC	alt_5664_new	2	9	4	3	3	1	4	2	8	5
TACCCAAAGATAGTTA	alt_5664_new	20	68	25	26	98	32	80	29	88	25
TTTTGCCTCATCGTAA	alt_5664_new	1	8	3	7	6	6	8	6	9	4
ATGCATATGCCCCTCC	alt_5664_new	0	0	0	0	0	0	0	0	0	0
GTTCCTGTGATTAAGT	alt_5664_new	0	1	0	0	1	1	0	0	0	1
CCCGCCACCCTTTCAA	alt_5664_new	3	5	4	2	9	0	7	0	9	1
GAAGCCACCCACAGAG	alt_5664_new	2	4	1	6	10	1	6	0	6	5
CCACGCAGACGCTTGG	alt_5926_new	6	8	2	5	7	2	8	6	8	1
TCTTTTACCGAAGATA	alt_5926_new	32	39	34	32	28	37	30	21	32	27
TAGTAGCCCTTTGCAG	alt_5926_new	3	7	3	6	7	4	9	5	4	0
TCAGCGACCTACGTGC	alt_5926_new	0	0	0	0	0	0	0	0	0	0
ATAATATCAGCGTCAC	alt_5926_new	30	28	34	27	29	28	39	22	30	18
GCGTATGCCTCAAAAA	alt_5926_new	8	11	9	8	24	8	12	11	14	3
AAGGGGCAGAAAAATA	alt_5926_new	134	141	158	124	152	120	170	101	163	105
TTTGATCCAGCCTCTT	alt_5926_new	34	60	44	37	64	38	50	33	63	31
CTTTGTGTTCCATGTC	alt_5926_new	8	19	16	12	16	3	21	10	12	10
TTTGACTTTCTGGATC	alt_5926_new	26	36	37	32	52	37	56	33	52	22
GTCCCAGGCACCAGTC	alt_5926_new	22	25	17	16	23	9	22	19	21	15
GGACTTGTTAGAGATC	alt_5926_new	18	30	19	19	31	18	33	17	42	21
CGTCCAAAACTCGAAT	alt_5926_new	23	13	11	14	20	23	26	18	29	12
TCTATGTTAGACACAT	alt_5926_new	30	28	51	26	35	27	45	18	54	20
TGACGTTCCATTGCAA	alt_5926_new	40	49	55	31	41	18	62	40	58	33
ACTTTTGGAGTCCGCA	alt_5926_new	0	0	0	0	0	0	0	0	0	0
GTTTAAATCACAGGCT	alt_5926_new	51	67	52	41	67	46	61	46	78	34
AGATTCGTTGGCGAAT	alt_5926_new	39	63	49	30	54	24	60	29	70	44
GGTTCAAAGGAATGTG	alt_5926_new	0	0	0	0	0	0	0	0	0	0
CTACTCTGGGCAATTG	alt_5926_new	0	0	0	0	0	0	0	0	0	0
ATCATGTCTTACAGGT	alt_5926_new	39	44	62	40	45	38	54	38	79	40
CTACGAGTAGTAGCAT	alt_5926_new	3	7	6	4	11	5	9	4	18	1
GGTTCCGCGTGACCGT	alt_5926_new	20	5	30	15	29	21	21	14	24	24
GTTATGTCTTTAGAAT	alt_5926_new	3	3	10	2	8	0	1	1	8	1
GAAGTGTGCACGTTAT	alt_5926_new	43	77	39	41	80	55	91	55	88	54
TTCAAGAATAGGTAAT	alt_5926_new	10	31	18	8	20	13	26	17	19	15
CACTTTCGCCTTTAGA	alt_5926_new	42	63	51	39	73	34	54	45	62	43
AAACTGGAGAGCTGCT	alt_5926_new	0	0	0	0	0	0	0	0	0	0
AATTTTTTAGCTTTTG	alt_5926_new	12	31	41	25	22	16	34	17	30	26
CGGTTTATATATTTCA	alt_5926_new	0	0	0	0	0	0	0	0	0	0
TCCATACACGGTCGCT	alt_5926_new	23	39	38	27	39	20	23	26	43	14
TAGGTCATTTACGGTT	alt_5926_new	4	7	6	4	7	5	15	4	7	4
TCGCTCCGTTCACTCA	alt_5926_new	35	34	47	33	37	31	54	18	47	28
TATATCATAGCGGTTG	alt_5926_new	21	28	15	20	30	14	41	19	33	16
CTTGTGCCCGGTCTCT	alt_5926_new	88	109	87	94	124	90	117	82	124	87
AGCGGGTTCCCACTGA	alt_5926_new	12	11	13	13	16	15	12	13	17	7
GATCACTGTGCGCCAG	alt_5926_new	25	29	22	19	29	19	40	27	29	21
TTTTTGCTCGGCCCCA	alt_5926_new	49	57	65	55	56	61	79	41	66	39
CACGTCATCTCATGAG	alt_5926_new	14	15	29	21	17	12	25	13	25	21
CTAGAAGCTATGATGG	alt_5926_new	3	1	8	5	3	3	4	3	4	5
TCACACTTTCCGTGCT	ref_4694_missing	50	99	52	51	103	36	94	46	95	53
TAATACATTTTTCTAA	ref_4694_missing	4	9	6	14	10	15	13	1	19	5
GTGCCCATGTTTTCTG	ref_4694_missing	2	8	8	3	5	4	2	3	4	1
TCCTGATAGCTTCCCC	ref_4694_missing	45	145	64	58	108	55	111	66	120	48
TTTGAGGGAATCCCCC	ref_4694_missing	6	19	14	12	23	9	17	14	21	9
TTACGCCACCCCGGCG	ref_4694_missing	25	30	22	9	17	13	29	13	49	12
TCTGAATGTGCACTTT	ref_4694_missing	55	100	71	68	77	57	108	56	125	46
TTTGTTCATATGTGCG	ref_4694_missing	11	29	15	7	25	18	40	16	34	16
GCTTTGAGTTTATATT	ref_4694_missing	26	71	42	29	67	24	62	28	63	29
TGTTCGCCTGTTATAG	ref_4694_missing	17	28	14	17	39	11	30	22	29	16
CGCTTTCAGTCTTGTG	ref_4694_missing	1	2	2	0	6	2	0	0	4	0
CACACTAGGAAGTACG	alt_126_missing	1	4	5	7	6	7	7	3	11	4
GTCCGTTCCCGGCTCC	alt_126_missing	45	41	45	33	47	39	46	38	53	33
CAACAAAATATATTTG	alt_126_missing	58	93	67	62	93	59	89	44	104	55
CTGACTGATCCTGTCC	alt_126_missing	13	19	15	10	15	9	21	6	18	9
CACCTGCTGGATACTG	alt_126_missing	50	52	71	45	61	44	55	61	91	41
GTTCGGTCAAGTATCG	alt_126_missing	5	14	16	12	20	12	19	9	15	12
ATGGAGGTCCCATCCA	alt_126_missing	17	29	25	15	32	27	29	20	32	13
TCAACGCTCATCTCTG	alt_126_missing	2	2	5	1	6	4	2	0	2	3
CTGGTGCAGAGGACAA	alt_126_missing	9	9	13	9	19	3	13	4	19	10
TTCGATTTATTTTATA	alt_126_missing	0	0	0	0	0	0	0	0	0	0
CACACACGGCCAGTTT	alt_5936_new	9	22	11	8	9	5	21	5	20	6
GCCGTTACCGGACCGA	alt_5936_new	0	0	0	0	0	0	0	0	0	0
ATCTTTTCCCGCCATG	alt_5936_new	7	9	6	5	11	11	5	17	14	6
TCGTCTTCTTCCATTT	alt_5936_new	54	49	59	53	54	53	42	50	54	35
ATTATATACATTCCCG	alt_5936_new	0	0	0	0	0	0	0	0	0	0
GCTCAGTCTGGTGAGG	alt_5936_new	14	15	12	7	18	8	16	19	21	7
CCGTTACAGCATGGAC	alt_5936_new	5	15	11	17	17	9	21	6	17	7
TTGTTAGATATTCATG	alt_5936_new	59	60	47	42	59	47	48	35	58	38
CCTAACTATGCTAATA	alt_5936_new	9	32	14	7	29	7	36	6	37	8
AAGTTCTTGTCGGGTA	alt_5936_new	15	39	19	17	31	13	24	9	32	20
GGTGTTATGGTCTATT	alt_5936_new	47	50	47	36	64	34	34	38	46	37
CCAGTGTTAGCCACAA	alt_5936_new	17	46	26	28	46	21	47	27	28	24
CGCATCCGTAACGTTT	alt_5936_new	6	6	4	2	11	9	4	6	7	2
TGTGTTGTTATAGGCA	alt_5936_new	0	0	0	0	0	0	0	0	0	0
ACACGAGTACCCTTAG	alt_5936_new	0	0	0	0	0	0	0	0	0	0
CCCGCTCCGCATCCTG	alt_5936_new	0	0	0	0	0	0	0	0	0	0
CCCTCATTTTGTACTT	alt_3308_missing	162	125	212	149	130	161	146	172	140	136
TTCACTATTTGCAGTT	alt_3308_missing	24	31	33	26	22	23	32	27	24	32
TGATTCTTTCCGCAAT	alt_3308_missing	0	0	0	0	0	0	0	0	0	0
GATTAGGTCTTAGTCC	alt_3308_missing	85	67	90	77	84	78	66	57	78	67
ATCGTGATTGGCCATG	alt_3308_missing	0	0	0	0	0	0	0	0	0	0
CGTTTCTGAGAGCTAG	alt_3308_missing	113	95	140	133	85	114	92	95	107	101
ACTATATTTTCGGATG	alt_3308_missing	38	27	60	37	34	35	41	38	22	33
CCGTCAGTGCATTGGT	alt_3308_missing	14	38	22	13	47	20	28	14	38	17
TACCATACAGGGTCAT	alt_3308_missing	28	25	32	29	31	33	27	34	32	18
CCATAGTCGTAGAAGG	alt_3308_missing	105	85	127	121	92	120	116	88	109	116
AGCTACTATCGCTCCG	alt_1368_missing	40	39	32	29	43	46	46	28	37	24
GGAGCCGCAACTGGCT	alt_1368_missing	37	45	51	36	45	41	67	29	61	36
TGAAACGCTGCCTCTG	alt_1368_missing	0	0	0	0	0	0	0	0	0	0
GTACTCCTCAAATTGG	alt_1368_missing	9	19	8	22	24	9	25	20	21	10
GTTGAACTCCATTTAC	alt_1368_missing	20	58	49	28	48	33	33	37	46	32
GTGACGGCCTGCACCT	alt_1368_missing	0	0	0	0	0	0	0	0	0	0
AAGGCGTTTCCAAGAT	alt_1368_missing	35	43	45	41	45	18	49	29	46	27
TTGTCCCTGTTACGGT	alt_1368_missing	22	27	39	25	36	22	31	15	42	20
GGTGTGGAATGTGATT	alt_1368_missing	14	18	12	7	15	10	15	12	16	10
TGTTTTTTGAGTAGTG	alt_1368_missing	6	31	18	10	31	12	20	10	19	14
ACATATAAAAAGGTTC	alt_1368_missing	26	36	20	28	26	27	20	16	30	24
GGCTGTGCCGGGTCCA	alt_1368_missing	59	49	69	56	79	60	68	47	69	46
TCAAATGAGGGCCGGA	alt_1368_missing	5	3	8	6	4	2	3	4	6	3
CTTCGATTATCATCGC	alt_1368_missing	8	4	9	8	6	3	9	9	2	2
GCGTTACCATTTAATG	alt_1368_missing	1	3	1	1	2	3	2	3	5	0
GAACACTTCTCGAGGG	alt_1368_missing	7	21	13	22	21	10	30	11	13	10
CGCGGGCCTATGTCAG	alt_1368_missing	0	0	0	0	0	0	0	0	0	0
CCCCGCGGGGTCTTCT	alt_1368_missing	48	86	37	34	81	36	89	39	99	25
TTTATGACATTGATTG	alt_3288_missing	0	0	0	0	0	0	0	0	0	0
ACGTTGTAAATGCCGT	alt_3288_missing	0	0	0	0	0	0	0	0	0	0
TATTCCCACCGGTCGT	alt_3288_missing	13	16	14	16	16	11	17	15	3	11
TGAGCTTGCCTGATCG	alt_3288_missing	17	28	29	21	27	20	26	22	29	21
TGACTACTTGGGAGAC	alt_3288_missing	20	18	10	10	13	24	17	6	17	13
TTCGAGTGCCTATACA	ref_158_upstream	23	8	21	17	15	22	14	11	13	13
CAAACGGTCGTGTGCG	ref_158_upstream	4	26	4	7	23	3	27	2	23	3
TGGTGCAGGGATTTAG	ref_158_upstream	67	33	92	78	31	75	58	62	27	58
TAGTCTACTTCTATGA	ref_158_upstream	128	76	151	122	93	129	84	138	86	110
AGCTTTGTAGGCTGGC	ref_158_upstream	19	13	22	25	9	20	11	20	11	17
TGCCCGGTTGATAAGG	ref_158_upstream	84	48	86	81	39	82	47	75	50	69
ACTAAGCGGAAGATGG	ref_158_upstream	100	37	121	93	38	99	57	90	55	56
CATTCAGGTTGAACCG	ref_158_upstream	59	23	45	44	22	27	31	47	37	37
CAAATTTGGTATATAG	ref_158_upstream	181	121	260	196	114	193	140	206	114	204
AAGGATCTCAAAATCA	ref_158_upstream	121	85	147	154	55	121	78	125	72	106
TGTAGATCGTATATAC	ref_158_upstream	93	33	93	95	47	84	59	68	38	68
GGGCGCTTACCGCTGC	ref_158_upstream	118	60	156	132	68	113	62	121	71	117
TACCGGCATTGCCGCT	ref_158_upstream	52	29	80	59	43	52	33	46	28	46
TTCCGCACTTACTGCG	ref_158_upstream	881	491	1133	928	512	884	485	840	502	803
GCAAAGTGAATATTCT	ref_158_upstream	20	8	25	20	9	19	12	12	8	10
CTCTTTTCAGCTTACT	ref_158_upstream	21	9	33	28	7	29	14	25	21	29
TCTTAACGCAAACTCC	ref_158_upstream	115	61	142	120	59	118	62	107	70	103
GGTTGATCCTCTGGCT	ref_158_upstream	0	0	0	0	0	0	0	0	0	0
AGATATGACACTTGTT	ref_158_upstream	0	0	0	0	0	0	0	0	0	0
TCTGTCGTTCACTGAA	ref_158_upstream	269	171	356	314	167	266	164	273	154	266
TCAAGTCCTTCCTCCA	ref_158_upstream	206	120	280	254	154	221	133	206	147	213
TTAACTTATCCTCTCA	ref_158_upstream	43	18	60	55	34	53	18	52	18	51
GTAGACCAGCGAGCTT	ref_158_upstream	52	23	71	75	32	58	49	67	25	38
TCTGTCGCGCAAGACA	ref_158_upstream	33	17	35	25	17	16	10	31	17	21
TCGATCGAGTCGGCGA	ref_158_upstream	34	30	25	32	28	22	28	30	29	16
CGCTTCTAACTTCGTA	ref_158_upstream	39	40	63	52	47	52	26	41	43	31
CCTCTCCGCCATCCAC	ref_158_upstream	0	0	0	0	0	0	0	0	0	0
TGCAAGCATCAAAGGT	ref_158_upstream	81	37	99	101	47	63	32	88	31	78
GCGCCTTTTTATTTCA	ref_158_upstream	17	8	22	21	11	21	8	22	6	22
CAGTGTTGTGGATCGT	ref_158_upstream	34	23	27	15	40	27	33	28	24	9
GTCCCGAGTCGACTGG	ref_158_upstream	9	37	18	16	32	21	40	18	45	8
ACGTCGTAAGAGCCGT	ref_158_upstream	50	20	53	52	25	39	31	28	31	38
TAAATATGGGGGGATT	ref_158_upstream	161	88	251	188	93	173	88	151	84	160
TCAATGCGCCATGAAT	ref_158_upstream	30	28	46	39	20	33	24	32	28	31
GTCCTAGTTGTCTTCT	ref_158_upstream	23	11	26	28	18	23	10	15	12	15
ATCAGGTCAACGACTT	ref_158_upstream	85	43	101	97	65	71	53	113	59	84
AAGTTCGTGGGACATT	ref_158_upstream	95	46	112	99	55	96	69	84	49	79
AAGGACCATGATCCTG	ref_5194_missing	25	18	40	44	20	37	13	41	12	50
GGTTCCCGATACTTAA	ref_5194_missing	0	0	0	0	0	0	0	0	0	0
GTAGGTTTGCGTAATT	ref_5194_missing	0	0	0	0	0	0	0	0	0	0
TGTGCATTAATATTAG	ref_5194_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTAACGGGGTGG	ref_5194_missing	57	33	69	58	24	58	35	64	26	50
CGTCTACGCATATGGC	ref_5194_missing	0	0	0	0	0	0	0	0	0	0
AGGGATGTTTCATTCT	ref_5194_missing	32	19	47	36	14	25	20	28	19	27
CGATGTTAGTTTAGAC	ref_5194_missing	19	10	27	30	16	17	16	32	12	21
ACCGTTTGTTAGAGGC	ref_5194_missing	387	191	462	406	226	355	250	366	209	312
GTACTCATGGGTTGCT	ref_4181_missing	1	5	1	2	2	1	5	2	2	0
TGTACGTGTATGTTTC	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TATGTTCTTTGAGGAA	ref_4181_missing	0	0	0	1	0	0	0	0	0	0
CTAATTCGCTTACTGG	ref_4181_missing	6	12	3	4	7	2	18	2	7	2
CGCCCGTTATTTCTGA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
ACGTTTCAGGCTGCAT	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
AACCGTTCTTGAGTCC	ref_4181_missing	3	1	2	1	2	0	1	1	1	1
AGTTTTGTTAGTTTGA	ref_4181_missing	1	3	1	0	1	1	0	1	2	0
GTTCTATTGCCAGTCG	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
AATGTGTTTAGTACCT	ref_4181_missing	1	4	3	0	11	0	7	4	11	0
GTCCGTGTTCGTAATT	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TAGTTTCTTCGACCTG	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TCGGGATTTGGCTCGC	ref_4181_missing	7	3	5	4	3	0	5	4	3	1
GGTCCCTGGAAACAAC	ref_4181_missing	2	6	3	4	9	0	3	5	6	1
GTTTCGCCCTGCTGTA	ref_4181_missing	0	3	1	1	5	2	5	2	0	0
GCCGTCATTTCTAGAA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
CAGTTTCGTATGTTGC	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
ATGCGCTAGTTGGAAA	ref_4181_missing	13	30	8	11	19	8	23	11	18	5
GCCTTCACTGTTGGGG	ref_4181_missing	1	4	1	0	1	1	1	0	3	0
CGGACTGCTCATTATC	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
CGTGCGTGTATCTGGC	ref_4181_missing	0	4	0	0	2	0	3	0	0	0
CAATTGTCCCCAGAGG	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TTGGTTACTGGATACT	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TAAGGTGTAATCGGGA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
AACTTTTACCTGGATT	ref_4181_missing	6	5	4	2	10	2	10	4	12	0
AGGCGTGATTTGAAAA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
GTAGCCATCTTCATCA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
CTTGTCCAGGTAAATG	ref_4181_missing	0	3	1	2	2	6	4	3	5	2
TTAGGTAAGTTTGCTC	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
GATTCCCAAAGTCAGT	ref_4181_missing	2	12	3	3	20	4	18	10	7	4
TGACATCAGCTCCAGA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TGGGTACCGGTATCGC	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TCTAGCCTAATGGTGT	ref_4181_missing	0	2	1	3	0	1	2	0	3	2
GGCGGAATTATGAATA	ref_4181_missing	3	4	3	1	1	0	2	0	3	0
CCCAGTATTTGTCGGA	ref_4181_missing	7	15	5	6	8	10	11	5	11	8
GCTCTGTCTACTCACT	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
GGTCTCCGGTTGACAG	ref_4181_missing	3	16	3	5	15	8	22	3	23	2
TATTTCCAGCTCTTCA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TGGTAAAGTCCTTTCT	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TTTACCGGGTCGGTCC	ref_4181_missing	0	1	0	0	2	0	1	2	3	5
TGTATCGTACCTTTTT	ref_4181_missing	6	8	5	2	8	1	7	4	4	4
CGCCGTCCCGGAGTAT	ref_4181_missing	2	8	4	0	1	1	5	5	3	1
GAGATGCTCTTTTCGA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
TGTGAGCCAGGCTTAC	ref_4181_missing	0	0	0	0	0	0	0	0	1	0
ATCACGGCTCTCCCTG	ref_4181_missing	6	9	3	5	4	3	8	4	10	2
ATCCGTGCGGGGGGCG	ref_4181_missing	0	4	0	2	0	1	2	0	1	0
GCAGCTAGCATTTATT	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
AGCATTAGGTCGATCG	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
CGGTGCCGGTTGCGAT	ref_4181_missing	1	4	1	2	1	0	3	2	9	1
ATCCATGCGAGAAACA	ref_4181_missing	0	0	0	0	0	0	0	0	0	0
AGAGAGGCGAAGGACT	ref_4181_missing	4	4	0	3	7	6	7	3	2	0
AAGGCCTTATAAGAGG	ref_4181_missing	5	20	12	11	14	5	20	6	16	4
GCCCTCTTTGGACCGC	ref_4181_missing	8	5	3	2	5	4	9	2	4	3
TAGCTAACCTTATGTT	ref_5897_new	87	109	89	83	99	84	87	81	104	70
ACGTCCCCCTGCCCAT	alt_5897_new	3	11	4	9	13	7	5	7	10	5
CTAGGTTAGCCGATAG	alt_5897_new	27	33	30	34	26	30	49	29	51	25
GGGTAATTTGTTGCGT	alt_5897_new	48	30	31	27	35	27	35	37	39	30
TTGATGTCTCTCCCGG	alt_5897_new	24	34	32	26	35	16	37	29	37	15
ATTTTAATGCGGGAGA	alt_5897_new	48	72	64	64	40	57	70	40	53	55
GGGACAATCGCGAGAT	alt_5897_new	11	16	22	9	14	13	7	14	24	13
GTTGGTACTATCAGCT	alt_5897_new	31	36	47	39	49	33	53	34	48	21
ATGTACAATTTTGCAA	alt_5897_new	11	16	10	6	9	9	14	7	15	8
GATCCATATTTAAGCT	alt_5897_new	49	70	73	51	84	51	65	47	69	39
TATTGGCGTTGTTTAA	alt_5897_new	0	1	0	0	1	2	0	1	3	0
CCAGGTATCTACATCG	ref_5897_new	16	18	15	18	25	15	24	9	26	12
TTCGGGCAGGTGTCAA	alt_5897_new	9	15	18	5	11	12	7	5	14	4
GGCAATGAAATCGCGT	alt_5897_new	100	96	82	79	111	78	98	75	139	74
TCGGTCCGGGCTGTGA	alt_3516_RC	0	0	0	0	0	0	0	0	0	0
TCGTACCCATGTTGTA	alt_3516_RC	49	53	71	84	71	45	57	65	55	47
TTTTTGTACTATACCG	alt_3516_RC	19	26	18	5	17	13	15	13	28	15
AAGCGACACGTGAGCG	alt_3516_RC	0	0	0	0	0	0	0	0	0	0
TAGGGTTATTACACAA	alt_3516_RC	41	39	40	48	35	34	49	41	59	32
TACAGATTCGCCGTGG	alt_3516_RC	34	51	43	42	51	39	61	45	45	28
CTGGAAACAGCCCACA	alt_3516_RC	21	41	43	41	55	24	38	34	51	43
TCTTAGGACTCGCAGC	alt_3516_RC	49	45	74	51	64	51	57	44	62	46
CCCCTTCGGCTATGGC	alt_3516_RC	55	34	57	48	50	33	42	36	52	46
CACCGAGCTTTATCGA	alt_3516_RC	10	12	13	9	12	19	9	11	7	11
ATAGTGGTGGGGTGCT	alt_3516_RC	11	2	5	6	8	7	11	4	10	6
TCGGACATCGATCTGC	alt_3516_RC	32	25	37	28	40	39	35	37	53	33
TGACCACTCCCAGGTG	alt_3516_RC	1	1	0	0	3	0	3	2	5	0
TCCTCTGGTCTGTGTC	alt_3516_RC	33	45	58	40	37	34	62	37	40	35
GTTTCGACGATCCGGC	alt_3516_RC	41	35	52	48	36	25	35	39	36	34
GGAGATTCAACATTTT	alt_3516_RC	0	11	11	2	6	5	10	10	11	6
GTACCTTCATGTGTGG	alt_3516_RC	0	0	0	0	0	0	0	0	0	0
TTTCATTGGCCTAGAT	alt_3516_RC	66	33	60	54	50	54	48	59	39	36
TGGTGCCTGCCTCTGC	alt_3516_RC	12	17	14	15	16	13	12	11	16	9
CTCGCTGGTAATACCT	alt_3516_RC	13	10	12	10	14	6	11	10	8	11
GCATGGCTTTCGTCTC	alt_3516_RC	0	0	0	0	0	0	0	0	0	0
TATCGCGTGCTGAAGC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CGTACTTCAGTTGACA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TAAGCTACGCTGATGT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
GAATACTTTCGTAGCG	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CGATATGTTCGGCAAG	ref_4403_missing	2	5	1	3	5	4	4	1	4	0
TTCAAGTTTGCACTTA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
AGGCTGGTTGTTCCGT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TCATTTTATTCTGGTT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TCACGTGCGTTTTAGA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ATCCATTGGTTCTTGC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CCTTCTTACATTGGTA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CCAAGTGACGCTCCTA	ref_4403_missing	10	28	6	6	29	8	42	15	36	10
GCTTTCCCTTTTTGGA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ATGGATCTTGCTCCCA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
AGCAAGATCTGTTCAA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
GTTGTTATGGTATCCC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CTCGCGGCAATCTGTG	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TCTGCTTATTTCGGTA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ATGCCCGGGGGACGAT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CGCTCAGTGCTGAGTA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ATGCGCGGGATGCTTT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ATTACAAACTTAGTGG	ref_4403_missing	12	10	7	2	5	5	3	4	4	4
CAAGCCCCCCATTTTT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TAAGGGACCCATGTCT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CATCAACTACATGCTA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
AGCATGGTTTCAGAAG	ref_4403_missing	5	8	4	1	4	4	14	5	12	2
TCCCAGCTCACGAGGC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CCAGCATAAAGGTTGC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CAACTTATCATGCATT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ACAATCTCGTAGTCCC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CACGGCACTATGCGGA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CTTTTGGGTTTGATCC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CCTCTAGTAAGTTTGG	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ACGCCCCTTTAAATGG	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TACTGCCCGTGGCGTT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CTTGTTCCGACCCGCC	ref_4403_missing	4	16	19	14	26	16	23	15	31	10
AATTATCGTCGGTTGC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CTACAGTATATAATTA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TGTTATGCAGTGATCT	ref_4403_missing	2	5	2	0	7	3	6	1	11	2
CCAATTCCATGAAGAT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TATTGGAGCGCGAAAG	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CCTCCTACCGCCCTTA	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
GGCCCTGTTCTGAATC	ref_4403_missing	0	0	0	0	5	1	3	1	5	4
GCATTTAAGCTAACAT	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
ATGTAAGGCCCCCTCG	ref_4403_missing	9	39	17	17	29	13	38	19	27	12
CTTTCCCTAGGTGAAT	ref_4403_missing	1	2	0	0	0	0	0	0	0	0
AGGTGGGTATTTTTTC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
TTTGGCTTAAGCTACA	ref_4403_missing	5	7	3	2	9	3	6	3	6	1
AAGCGTGGCGGAGGGC	ref_4403_missing	0	0	0	0	0	0	0	0	0	0
CTGTGGCGCTCCTGGA	ref_4403_missing	1	2	0	2	2	0	3	0	0	0
CGCTAGCTATCCGCTT	alt_4732_missing	3	21	2	2	7	4	8	3	11	3
CTGCACTTCTAATAGC	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
GTTAGAAGATTCCGCA	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
GGACAGTTAATGCCGT	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
CCGACATCCGCAGTAC	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
CTTGAATTACTACCTA	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
CAGTGGATTGCGTGGT	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
AGACTGGCTGAGTTGC	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
GTGACTTCAGAGGTGC	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
AGGGCTATCGATACAG	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
CGGGGAATGCGTAGGG	alt_4732_missing	9	20	14	6	21	11	18	13	27	9
GTTAATTCATGTACTT	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
TCGGCGTGCCGTGTGT	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
AGCAAGGACTTCGTCC	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
AGAGACCTCTAGCCAT	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
CACCCTTGTGGCTACG	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
TGAAGGTGCTCCTTCT	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
CACCGGGTGCCATGTT	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
TGCGTGGTCCTCCGCG	alt_4732_missing	0	0	0	0	0	0	0	0	0	0
GTATGAGTTGCATGCT	ref_2496_missing	0	0	0	0	0	0	0	0	0	0
TTGTGCGGTCTTTTAA	ref_2496_missing	12	21	12	16	21	5	18	10	20	3
GCTCTGTTTTTTATTA	ref_2496_missing	2	12	1	5	6	1	5	4	8	5
TCGCGGATGGAGGCTG	ref_2355_missing	39	35	56	35	23	33	38	46	31	28
ATAGTTGTTCGTTGTC	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
TTCCCTAAGCATGTCG	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
GGTATTTTTTTTAATC	ref_2355_missing	7	16	13	14	8	14	21	5	12	6
ATGCCTCGGTGCCAAT	ref_2355_missing	2	0	0	3	2	2	4	1	0	1
TTGCTACATTCAATCC	ref_2355_missing	17	14	13	7	9	13	13	10	13	12
CTTGTGACTCACATCG	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
AAGGTTCTCCTGCGAA	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
CGGGATACACGCAAGA	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
TACAATCTGGGGTGCT	ref_2355_missing	5	5	8	8	7	5	11	5	5	7
TTTGTGGCGAGCATAA	ref_2355_missing	10	4	2	6	4	6	8	10	7	4
ATTGGGTACTATTTTC	ref_2355_missing	3	8	10	5	2	4	6	3	5	3
CATTGGAAGCTTTGGA	ref_2355_missing	25	33	25	12	27	16	25	18	29	15
GCGTAATATTCATACT	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
TAAGCTTGCTGAGCTC	ref_2355_missing	2	0	1	1	3	7	5	1	5	0
CTACAACCCTGACGGC	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
GGTCGATTTGTGCTAT	ref_2355_missing	10	17	5	8	17	10	37	4	23	5
AACGCACGGGGTAGGT	ref_2355_missing	7	4	15	19	9	3	0	6	13	8
AAGTACGTGGTTACCC	ref_2355_missing	47	43	55	41	50	40	35	44	51	26
CACTAAGACTGTTTTT	ref_2355_missing	3	3	6	3	3	5	9	3	9	1
GCTATCGAGCATGGCA	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
ATCGTATACCCTGCCC	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
ACCACATCCTCCAGGC	ref_2355_missing	3	7	3	3	12	2	11	4	7	9
TCGTGGCTTACTTCGC	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
GGGTCGTTAGCTTCCA	ref_2355_missing	19	32	22	15	17	19	19	27	24	16
ACACTTGGACTTACCG	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
CACCATCAGGAGCTAG	ref_2355_missing	37	45	41	35	43	38	37	25	43	30
TAGTGTCTACTGAAGT	ref_2355_missing	0	0	0	0	0	0	0	0	0	0
AGTGCAACGACCACGC	alt_5962_new	105	75	144	137	74	105	86	103	84	96
GATAGACTGGAACTTC	alt_5962_new	24	16	22	21	18	26	11	13	19	25
TATATGTCCTTGGTAT	alt_5962_new	56	47	54	46	35	44	41	39	46	19
ATCAGGTTATGCTCAA	alt_5962_new	60	48	63	40	44	49	41	30	36	37
ATTTGAAGAATCAGAT	alt_5962_new	52	35	70	51	30	37	38	43	49	47
CTAAGTGAGCTTTCCA	alt_5962_new	114	102	148	120	95	131	106	92	109	112
AATCTTTGGTCCGGTA	alt_5962_new	0	0	0	0	0	0	0	0	0	0
GATCTTTACGTTGTGA	alt_5962_new	0	0	0	0	0	0	0	0	0	0
CAACGTTCTAACATTT	alt_5962_new	59	53	63	60	51	55	49	54	80	38
TTGTCCGAGTCTCTGT	alt_5962_new	65	78	94	65	59	75	62	70	60	36
CTCGGCGTGACTATCG	alt_5962_new	25	22	47	50	30	44	27	40	39	32
GCACTGCCTGTCGCCC	alt_5962_new	0	0	0	0	0	0	0	0	0	0
GTTCAATACGGTGCTA	alt_5962_new	17	18	24	18	17	23	13	18	10	14
CATCCGTTGCTCTGCA	alt_5962_new	15	5	11	11	13	13	8	5	7	10
TGATTTGTGTCCCGGA	alt_5962_new	0	0	0	0	0	0	0	0	0	0
CGGCTTGATATTGGAC	ref_543_missing	23	25	16	16	32	10	33	19	18	12
GGCGGCTTCGCACATT	ref_543_missing	0	0	0	0	0	0	0	0	0	0
TTAGTAGCTCATATTT	ref_543_missing	5	10	5	4	8	7	11	8	8	1
TGTGTTCACATGCCGA	ref_543_missing	0	0	0	0	0	0	0	0	0	0
TAGTGAACTTACCAAC	ref_543_missing	0	0	0	0	0	0	0	0	0	0
GGACTCATTGATGAGG	ref_543_missing	286	418	286	247	423	260	404	229	409	231
GCATAGAGGTTTGACA	ref_543_missing	40	46	35	32	64	35	53	21	58	33
GCCGGTTTTAGGTGAG	ref_4696_missing	9	12	4	6	8	5	14	5	6	3
CTCCGCTACGTTGATA	ref_4696_missing	9	13	10	14	11	10	13	7	13	15
AGTTGATCCAATCCCT	ref_4696_missing	18	19	22	12	11	12	19	5	19	13
TATTGAAGTTTTCAAG	ref_4696_missing	2	2	1	4	5	2	1	1	3	5
TACTGTGCTCGCCCCG	ref_4696_missing	7	28	5	7	38	15	33	9	29	9
ACTTGATGCTTCAGTC	ref_4696_missing	0	4	10	7	16	4	4	5	8	4
TCGCGGGCTTTGGGAG	ref_4696_missing	0	0	0	0	0	0	0	0	0	0
TTTTGAAACTCACATG	ref_4696_missing	43	54	50	35	40	52	76	42	35	41
GCTCTAATTACATAAG	ref_4696_missing	40	30	49	29	36	24	34	20	30	26
CCAGTACTTCAGGTGA	ref_4696_missing	3	13	3	10	16	4	14	7	26	5
GTTCACATTGACTACC	ref_4696_missing	28	31	25	15	28	30	26	22	34	19
GTGAGTGGCTTGATTT	ref_4696_missing	5	12	8	4	6	6	5	8	8	3
GGTATTTCCCTAGGCA	ref_4696_missing	0	0	0	0	0	0	0	0	0	0
AAGCGCTTGCACCTTA	ref_4696_missing	46	56	59	49	54	64	82	43	67	46
TCGGGTCCAGATAATA	ref_4696_missing	143	170	234	170	195	155	161	147	194	129
ATATCTCCGCTCTCTA	ref_4696_missing	9	8	13	12	12	10	8	7	10	19
TCTCAGAACCGTCTTA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCGCCTAATACGACGC	alt_1659_missing	12	5	29	21	10	10	5	11	7	11
TAAGGTTGGTAGTTCA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
AAGCATATGCACAACA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GATACCTTCTTAGCAT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TGGGATACAGGCCTCG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
CCAGTTCATTAGATAA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GCCCGGTTAGTCGATT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TACTGTGGTCAACATG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TGGTCGGCTTTGAAAC	alt_1659_missing	0	1	1	2	1	2	0	2	1	1
ATTATGGCGCCCGCCA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
AACGCACAGGGACGAT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
ACTTATGCGCTTGGTA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TTCCGATGAGCATGGC	alt_1659_missing	6	5	4	8	2	4	5	4	4	10
CAAACTAAGCGGGCAT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCCGTCCCTCCATCTC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
ATAGTTCGCTCAAACC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GTTGGCATAAGTTCCG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCGTCTAATGGCACCA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GGCGCTATCATATTGA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
CACAGGTGCTTGTTAC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TGAAGCCCTCGAGTTG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCGCCCTAGCGGTGTC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GAACAATGTGCAAAAC	alt_1659_missing	4	2	2	1	0	1	3	2	1	2
CCATCACAATGTGCTT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCCCAGGCTCAGTTAT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GCTTGTGCCGGTTCCC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GTGCAAGTACTTGTCG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
AATTTTGGATTGTGTG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
ATTGTTCTGCCGTATA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCCGGCGTGTCATGGT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
ACACGTCGGCTGGTGA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GCGGGGCATCCGCCTC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GGATTGACACTGGTAG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GTTTAGCCCTTTGGAA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
ACGAATTATCCATGAT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GTGTTCTACAGCCTTG	alt_1659_missing	0	0	0	0	0	1	0	0	0	0
TCTCTTGCACGCCTTA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
CTGACGACCACGATGT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TGGACATGTTGACTGG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TATGGCGATACGCGAT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCTTCCTTAGGTCTTA	alt_1659_missing	0	0	0	0	0	0	0	0	0	1
TGTAAAGGCGGTCAGA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GGTGGCAGTGAGCTTT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TTCACTCACGGCTTTT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
CATGTCGTTTTTATTT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
AAGCCTAACTTGGTTC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TTACAGACAGCCTCCC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
GTAGGATATGCAAACG	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
AGCTCGGTATCGACGC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
ATTCAGCTGAGGTATA	alt_1659_missing	0	0	1	0	0	0	0	0	0	0
GTGTGTTATAGACTCT	alt_1659_missing	0	1	0	1	3	1	1	0	2	1
GCAGCATTTGGGATCT	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TCGGGGTATTTCGGCA	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TAAGTTCTATGCATAC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
TGGCTGCCCCCGACGC	alt_1659_missing	0	0	0	0	0	0	0	0	0	0
AGCAATCTTAAGTTAG	ref_5866_new	47	9	55	45	14	52	24	43	22	33
GATACCTTCTGCTTTC	ref_5866_new	34	20	48	47	19	36	14	45	23	32
TCGAGCGCGCCCTTAG	ref_5866_new	19	5	19	15	6	18	10	22	5	18
TGGTCGGTATTTTCAA	ref_5866_new	72	16	66	66	27	55	23	50	30	56
GATATGTTTCGAGTAG	alt_5866_new	44	16	54	54	18	36	19	34	17	34
CATAAACTGCTAGTTG	ref_5866_new	96	23	90	102	26	106	30	60	44	86
AGTGGATCATTGTCGG	ref_5866_new	77	25	100	99	30	85	23	58	24	65
AAGGCAACCCCGACTG	ref_5866_new	49	16	55	43	15	48	23	43	23	27
CTACCCATGTCACTCC	ref_5866_new	88	57	116	89	55	80	38	107	50	68
CTTTCAAATTCTTTAG	ref_5866_new	87	36	107	111	38	123	45	99	38	81
AGTCTTGCGCTTACAG	ref_5866_new	268	128	345	264	129	246	113	226	128	220
ATCGTGTAATAATCAA	ref_5866_new	169	84	248	181	75	176	85	178	72	148
GCATAATGCATCCTTC	ref_5866_new	169	83	224	174	58	181	72	140	82	144
CAGCACGTGTTATGTG	ref_5866_new	272	141	383	323	134	276	164	288	153	226
TCTACAGCTTTGTCGC	ref_5866_new	80	41	121	92	47	95	39	84	53	75
CGGCCCATGATCAGGC	ref_5866_new	44	13	51	46	23	42	14	39	22	47
CTGGAAGATATCGTAT	ref_5866_new	0	0	0	0	0	0	0	0	0	0
TGTGATTTTACGGACG	ref_5866_new	227	105	277	232	100	213	116	202	105	194
GAGCGTAGCCTTTGCT	ref_5866_new	0	0	0	0	0	0	0	0	0	0
TTTCCGCTGTTCGTGG	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTTACAAAGTCC	ref_5476_missing	72	90	76	59	64	53	89	65	91	47
AACACACTTTCCCGTC	ref_5476_missing	3	20	2	3	28	2	15	2	31	0
TCGCGATTCTAGAACA	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
CGTGCACTCTTGCGCG	ref_5476_missing	24	32	32	20	34	26	46	23	44	28
ACTCGTTCTTTGTGCC	ref_5476_missing	0	5	1	0	10	0	1	0	5	0
CGGCATCAGTTTTGTC	ref_5476_missing	6	7	6	5	8	5	5	3	7	8
TCATGGTAAGATCAGT	ref_5476_missing	21	40	28	24	17	20	24	24	37	13
AGATTCTGTGTACCTA	ref_5476_missing	17	28	20	15	24	6	20	14	24	8
TTTTGTGCTCCCCATG	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
GTGCCAAGCATCTGTT	ref_5476_missing	5	13	16	9	20	12	18	11	21	10
GTCTCCGTGTAGCTCG	ref_5476_missing	17	25	12	22	15	11	19	10	30	9
TTTTGTTATCGTCCTG	ref_5476_missing	6	20	12	5	11	7	11	5	9	8
CTTCGTGTGATAATTC	ref_5476_missing	7	13	15	5	13	6	20	7	14	1
ACGGTTTAAAAAGTCA	ref_5476_missing	3	4	5	6	2	4	3	3	5	4
TTTGCTAGGCTGTTTC	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
CCCAGTCCATATAGCG	ref_5476_missing	5	4	0	3	2	1	6	0	3	3
AGCGCGCGCCGTTCTA	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TGATCATATGCTCACA	ref_5476_missing	42	64	40	53	63	33	52	47	61	45
ATACGCTGGGCTGGCT	ref_5476_missing	12	18	19	8	18	19	20	14	19	7
ATTTCATTTAGGTACA	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
AATGGTTGGGCCAATA	ref_5476_missing	38	25	26	27	26	22	33	19	34	29
TCCCTGTCTTTGATAC	ref_5476_missing	4	12	4	2	5	4	5	6	7	2
GTCATCGGGTCTATAC	ref_5476_missing	17	28	16	13	37	13	45	16	28	18
GTTTTAGCCAAGTTGT	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
CCTAGGTATGCCGCCC	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TCCGTCAAAACTCTCG	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
CATGCATAGGGTCTGT	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
CCAGGCCCGGATTGTA	ref_5476_missing	4	37	18	2	38	4	44	4	42	6
GTTGGGGCTTCTTACA	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TTCTGACGGAAGGACG	ref_5476_missing	8	8	6	8	10	5	11	4	4	6
CATACAGTAGATCGGA	ref_5476_missing	11	17	7	15	13	11	15	11	21	9
AAGTGGACACGCCGGT	ref_5476_missing	33	34	36	35	36	23	40	32	40	28
GCTCGAATGTGATATT	ref_5476_missing	8	12	13	10	14	10	17	14	10	10
TCACAGAGTCTCCTAC	ref_5476_missing	15	32	21	24	29	23	31	21	57	22
CCTCTTGATATGGGTC	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TGGCAGGTCGAGCCGC	ref_5476_missing	5	4	9	9	14	4	8	5	14	4
TTACTAAGGAGAAATT	ref_5476_missing	10	10	9	16	7	8	20	7	5	7
ACCCTTCTTGTCCAAC	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
CAGTTTAGCTAGCCCA	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
AATGCCACACCGGAGA	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TTAAAGATCGCATCTT	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TCATTTCGTTCGCCCG	ref_5476_missing	0	0	0	0	0	0	0	0	0	0
TGCCTGGTTGAAGCTC	ref_4178_missing	21	40	36	16	51	23	44	21	46	18
CTTCGCGTATCTCCGG	ref_4178_missing	24	47	23	26	25	33	46	25	43	28
GCGCAGGCGCAGTACC	ref_4178_missing	19	45	20	19	30	10	52	14	51	24
TCTTCTGTCTTGCTTA	ref_4178_missing	0	0	0	0	0	0	0	0	0	0
CGTTCGTCCACAGACG	ref_4178_missing	3	19	13	13	12	11	16	8	17	9
TGGTCCTTGAGGTGTC	ref_4178_missing	0	0	0	0	0	0	0	0	0	0
GTGAGGTTGTTTTCGG	ref_4178_missing	21	49	21	8	38	20	43	29	44	11
ACGCTAGGTGCGCACC	ref_4178_missing	37	92	37	39	94	48	113	42	100	48
TCTGAGTCCAGTACCA	ref_4178_missing	15	26	23	5	24	9	34	12	43	20
TGACACCGCCATCGTA	ref_4178_missing	29	35	30	44	40	23	43	27	37	21
GTGCCAAGTAGCACTA	ref_4178_missing	0	0	0	0	0	0	0	0	0	0
GATGTGGTTCCTTTTG	ref_4178_missing	0	0	0	0	0	0	0	0	0	0
TCGAGAATCGACCTAT	ref_4178_missing	18	47	31	24	45	18	48	24	39	28
GTCTCGACACAATGGG	ref_4178_missing	0	0	0	0	0	0	0	0	0	0
ATAGGCACTTGTTACA	ref_4178_missing	13	20	17	12	31	11	31	15	27	7
TATTGTTTCATCCTAC	ref_4178_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCGATTGCATAC	ref_4178_missing	0	0	0	0	0	0	0	0	0	0
GCTTATTCGCATGGGA	ref_2381_missing	0	0	0	0	0	0	0	0	0	0
GAGTGAATTGTTATAA	ref_2381_missing	9	7	5	7	11	5	6	6	12	10
GTTGATCGACTCGTGA	ref_2381_missing	0	0	0	0	0	0	0	0	0	0
CCCGTCTACTTGTCGT	ref_2381_missing	0	0	0	0	0	1	1	0	1	0
CGGTCAATGTACCATT	ref_2381_missing	0	0	0	0	0	0	0	0	0	0
GACTCACTCTGCCACA	ref_2381_missing	13	10	13	7	18	2	18	8	13	10
CTCATCTCCCGTAATG	ref_2381_missing	2	7	2	2	9	0	2	1	2	0
CGTGATTGAGATCGAA	ref_2381_missing	0	0	0	0	0	0	0	0	0	0
TTTTAAGTCGTATGGT	ref_2381_missing	0	0	0	0	0	0	0	0	0	0
ATATGTGTGGCTATAA	alt_4236_missing	30	50	31	28	33	35	53	39	47	26
TGGTTGTAAAGGCAAC	alt_4236_missing	0	0	0	0	0	0	0	0	0	0
TTGAATTTTTGTAGGT	alt_4236_missing	0	0	0	0	0	0	0	0	0	0
CCGACGTTGAACTTTT	alt_4236_missing	20	40	23	27	38	31	25	23	29	25
TATCAGTGCAATCGTC	alt_4236_missing	0	0	0	0	0	0	0	0	0	0
CGACGCCATTACCATT	ref_468_missing	79	105	137	95	109	94	115	83	119	95
TCTCCACGTTACTATC	ref_468_missing	33	51	37	34	28	21	36	26	57	31
CTAACCCCAGAAGGGA	ref_468_missing	0	0	0	0	0	0	0	0	0	0
AAGGGCAGCATAGCCG	ref_468_missing	42	49	44	49	57	35	70	52	54	31
TACATATTTCTTTTGA	ref_468_missing	22	31	29	28	18	15	15	18	14	14
CTGATGGAGGCATATG	ref_468_missing	28	26	32	23	30	27	25	21	20	14
CGCACGTGTCTCCACT	ref_468_missing	44	69	44	52	64	43	65	33	77	41
TCCGGCTTTAATTTCG	ref_468_missing	0	0	0	0	0	0	0	0	0	0
GATGGCAGGTCCACTG	ref_468_missing	69	90	93	89	83	79	70	73	86	73
CGATCCCGTGCTGCTT	ref_468_missing	2	6	4	3	6	7	1	3	1	4
TTCGTAACCACAGCTA	alt_5914_new	0	0	0	0	0	0	0	0	0	0
ATCTGGAAGGTTATCG	alt_5914_new	7	12	5	3	7	4	11	7	8	8
CGGAGGGCGTTAGTCT	alt_5914_new	5	6	5	2	8	6	3	2	6	0
CCATGCTTCCATGCCC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
CTGCCACGGCGGTACC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
GCGGTGGACTTTAGGG	alt_5914_new	4	9	4	3	3	5	13	5	3	5
TTTTCAGTTTTTTGGG	alt_5914_new	7	8	2	5	5	5	5	3	5	8
TCATTCAGAAGCACCT	alt_5914_new	0	0	0	0	0	0	0	0	0	0
ACAGTACCTACCTAGC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
CCATTCGATACTCTCC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
GGACCCCTTTTTCTCG	alt_5914_new	0	0	0	0	0	0	0	0	0	0
GTAGCGTCCCACAATG	alt_5914_new	0	0	0	0	0	0	0	0	0	0
TTCTGGGAATATCCTT	alt_5914_new	0	0	0	0	0	0	0	0	0	0
CGGCGAGCGCCCGACC	alt_5914_new	20	41	25	26	37	27	39	17	45	28
TTATACTTTCATTAAT	alt_5914_new	10	20	12	25	20	17	19	13	30	14
TGGCCGTCTAGGTCGT	alt_5914_new	3	7	5	3	8	5	9	1	13	3
TCGCTCCGGGAGTTCT	alt_5914_new	0	0	0	0	0	0	0	0	0	0
ACTGTCATCTGTCGTG	alt_5914_new	7	13	10	5	16	9	9	12	16	2
TGCAGTTTGTGTTTGT	alt_5914_new	0	0	0	0	0	0	0	0	0	0
GCAATGATTATGTTGC	alt_5914_new	3	13	7	6	12	12	9	3	15	7
CTCCGTCTATATAGAC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
GGACACCTTCGATTTC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
ATGCTTTTTTAAGGTT	alt_5914_new	12	6	11	3	9	9	8	11	11	9
CGCCAGGTCCAATAAG	alt_5914_new	0	0	0	0	0	0	0	0	0	0
GAATCCCTGTTTAGAC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
TGATATTTATATTTTG	alt_5914_new	1	1	2	1	2	0	1	5	2	2
ACTTATTGTCGTCTTT	alt_5914_new	2	0	2	1	5	2	2	1	2	2
AACCTGAATCGTCTCA	alt_5914_new	2	3	2	2	4	5	0	0	7	6
AAGTAATGGCATTGCA	alt_5914_new	0	0	0	0	0	0	0	0	0	0
TCTCGCTCTGGTGCGG	alt_5914_new	14	26	18	13	14	14	23	21	34	8
ATTAGCCTAATCGCCA	alt_5914_new	0	0	0	0	0	0	0	0	0	0
ACGGTGGTTGTTTTAG	alt_5914_new	0	0	0	0	0	0	0	0	0	0
ACCGTTTATCAGCCAA	alt_5914_new	0	0	0	0	0	0	0	0	0	0
CAGCGGTGCATTAGAG	alt_5914_new	0	0	0	0	0	0	0	0	0	0
TGATAAGTGTTACTTA	alt_5914_new	0	0	0	0	0	0	0	0	0	0
ATATCGTATTCGTATA	alt_5914_new	1	4	0	0	1	1	0	0	5	1
GTTGCAACATATTACC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
TCGTGCAGATTTAAGG	alt_5914_new	4	7	11	8	6	6	10	0	5	0
ACGGTCAGAGCAGATT	alt_5914_new	0	0	0	0	0	0	0	0	0	0
AAGATGACATACAGCC	alt_5914_new	5	8	8	1	6	1	10	3	7	3
TCGGGGGCTTCGTTAG	alt_5914_new	4	6	5	0	9	1	1	4	7	3
TTTCATAGCGGGCGGA	alt_5914_new	6	19	16	13	16	8	14	8	13	12
ACGTTTTTGTGTTTCG	alt_5914_new	2	6	3	6	7	8	7	3	9	3
AGCGGTCCCCCGGGTT	alt_5914_new	0	0	0	0	0	0	0	0	0	0
GTTTTACCCATTGGCC	alt_5914_new	11	16	15	8	15	13	18	10	7	7
ATGTCATTGTGTGGCT	alt_5914_new	0	0	0	0	0	0	0	0	0	0
CTTTTGTGTAAGAGGC	alt_5914_new	0	0	0	0	0	0	0	0	0	0
AGGTTTGATTTGGATA	alt_5914_new	9	9	13	12	9	7	22	7	17	10
GAGTAATCGCGTGTTA	alt_5914_new	4	13	11	6	10	6	9	10	9	6
CCGCATCGTGACCTCA	alt_5914_new	0	1	1	5	2	2	2	2	2	0
TTAGCAGCTGTTAATG	alt_5914_new	0	0	0	0	0	0	0	0	0	0
TTTGATTTCATTATAA	alt_5914_new	0	0	0	0	0	0	0	0	0	0
TTTATCAACTAGCGCA	alt_5914_new	9	8	11	10	15	11	21	11	10	10
TTTGTTGGTTGGGCGA	alt_4178_missing	19	17	14	23	17	8	24	7	14	11
TCCTCTGTACTTCCCT	alt_4178_missing	22	29	20	25	34	16	26	16	35	19
TTCCATTGGGATATCC	alt_4178_missing	37	92	46	64	76	54	86	45	98	43
CCGTGGCCCAACTTTT	alt_4178_missing	10	25	14	10	34	7	31	15	29	10
TTACTCGGCCCATGGG	alt_4178_missing	16	35	19	12	24	12	19	11	32	16
TGGGAGTCTTCACTAA	alt_4178_missing	9	12	6	3	13	6	16	8	14	16
TCAGGCGGCGCCCATA	alt_4178_missing	11	22	15	7	16	12	18	9	26	9
GAGTAGGACTTCGCCC	alt_4178_missing	0	0	0	0	0	0	0	0	0	0
TCTTCCTTTCTGGGCC	alt_4178_missing	14	31	20	20	25	19	21	9	28	14
AGGTCGAGCATTGTTA	alt_4178_missing	91	180	145	97	168	124	151	96	168	90
TATGTAGCTTTCAAGC	alt_4178_missing	38	84	43	29	69	29	82	32	88	39
CTCCAGATCTGAACGG	alt_4178_missing	6	20	11	16	7	13	8	14	12	8
ATATACTGCCCAACCG	alt_4178_missing	6	12	3	7	10	8	11	5	12	5
AATGAACTCGAAGCCT	ref_3308_missing	112	91	168	128	81	104	104	125	103	116
GCCCTGGTTGTTGTAC	ref_3308_missing	196	152	194	190	156	183	168	176	207	172
TTCTATTATTTCGTGT	ref_3308_missing	74	54	103	66	37	67	63	60	71	73
TTGTAGCATTATGTCA	ref_3308_missing	61	54	64	72	41	80	43	64	48	55
CAGAGTGAGCCTTTTG	ref_3308_missing	110	99	180	120	126	130	141	143	142	106
GCATGGGTTTCAAATT	ref_3308_missing	15	9	14	8	11	6	8	13	12	7
TCATACAAGTTTAATG	ref_3308_missing	82	60	66	62	35	69	53	55	61	68
TATAGGGGGCATTGTG	ref_3308_missing	91	56	110	76	72	70	69	60	68	52
TTATTAACTCGCGAAT	ref_3308_missing	36	33	44	41	19	32	27	32	40	30
ATCTATCAGACGGTTG	ref_3308_missing	208	208	290	247	239	212	193	222	253	231
TTCACACTGGGTTATG	ref_3308_missing	133	88	137	120	86	120	85	103	106	94
TCAGCGTCTCTTTCCA	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
ACTCAGCTAGTTGTAC	alt_3493_missing	4	3	5	5	5	4	9	4	5	4
CACGTGGCCGACCGCA	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
GCTCAAATCTTAAAGA	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
TGCGTCGGGGGTTATC	alt_3493_missing	0	2	4	3	2	0	1	0	5	1
GGGTCCGTTATCAAAT	alt_3493_missing	3	11	6	6	9	4	6	10	9	4
TTTGCGACCCAGCCAA	alt_3493_missing	5	7	6	0	8	9	5	10	8	3
ATGAAATCCGCCAATC	alt_3493_missing	10	14	15	13	17	9	12	9	14	8
TCCGCGGGTGATTTAT	alt_3493_missing	10	9	4	7	10	8	7	3	7	5
TCGTGTTATATCATCT	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
TGCGAGAGCAGAGCAT	alt_3493_missing	3	4	2	2	13	0	7	3	3	3
GCCTATTTTCTATATC	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
TTACCATAACGACATT	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
AGCATAGGGGCGCCCA	alt_3493_missing	8	7	2	7	7	8	5	10	10	5
ACTCTTCCGACCCCGG	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
GTGTTAACAGTATGAG	alt_3493_missing	16	14	13	8	17	9	12	6	16	18
CTGTCCTGTTTTCCAT	alt_3493_missing	10	14	17	7	5	8	10	13	15	7
GAGAGAAATGTGTGCT	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
TCCAGTAGAGGTTCGC	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
GCGACGGCACGTATAT	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
GCGGGAACGACATAGA	alt_3493_missing	1	3	3	2	7	3	0	1	5	2
CTCCGGTTTGCTAACT	alt_3493_missing	13	33	22	15	17	19	18	13	24	12
TTCCTCTGCTTTTAGA	alt_3493_missing	0	0	0	0	0	0	0	0	0	0
TTTTACGTGGCCGTCT	ref_4561_missing	4	5	5	6	0	5	8	3	2	4
TGATTTTGTGCCTCGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TTCGCAGTTATTGGGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CCAGATATTGATGACC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GGCTTGGGGTCATTGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CGCAGAGATCTATTGA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTGTAATCCCCTCCTG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTGAGTAGTCCTTATC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
AACCTATTATCCCGGC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
ATTCAAATGTTTATTG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
ACGAATCTTCTCCACG	ref_4561_missing	6	14	13	9	19	5	21	5	14	4
GTGATTTCCATTTAGA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TCGGATACGATCCCGC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TCTAGTTATTAGTGCG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CCGCGCTTGTCATTGT	ref_4561_missing	9	10	8	10	11	10	17	11	22	11
TACTGTCCGTTCTGTC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GTCCTTGTCGTGCGTG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GGCCTTAGTAATTTAA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
ATGTTTTATCCGTGGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GTCCGTCCCTAACCTC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CAGGTCATGCACTTAG	ref_4561_missing	2	1	4	5	1	2	6	2	3	2
CTTGCGCACCTGTACT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
ACAGGCATCCCTACGG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
AAGCGCTTTGTATCGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTCCCGTGTGGAATTT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTACTACCTAGGCGCT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GCAACTGGGAAACGAT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTGAGCATCACGCCTG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TTTCCGAGATCAAAGC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TTAACTTCCGAAGCTC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
ATGCGCTTCTATAGTG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTTAACCCCTCGCACC	ref_4561_missing	15	15	20	15	22	10	27	20	20	9
TCAGTCTACCCGTACC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TGGAGGCAGTTGCTGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TTAATTTTGCCTCCAA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTGGAGGTTCTTTGTT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
AAGGATTAACATGTCG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CACGCACTTAGAGATA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GTCGTGTGGTGGTACC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GTATTTCAAAAAGCTA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CAACGTGGGTGGCATA	ref_4561_missing	7	15	19	7	11	7	17	12	14	13
TATTTGCGTGCAATAG	ref_4561_missing	7	12	12	11	16	14	13	11	14	9
GGGGACACTGGACGGC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTCTGGATTTTT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TAACGCGGTGTATTCT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GCGCTCATGGTCTAAT	ref_4561_missing	6	4	5	1	5	5	10	4	3	5
AAGTTCTTTTTTCTGT	ref_4561_missing	9	8	12	8	16	5	11	5	16	7
CTCACGAAACGATGAG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
ACCACCAGTTGGATGA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TCCGCGGATGCGTCGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TTCGGGCCTTGCGTTA	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
AACAAGGCCTGTGGCC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GTATACAGGAAATTAC	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
AAGGGTGTGTTAGCCG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GCTTTATTCGGACTAT	ref_4561_missing	7	20	9	10	11	10	18	8	13	4
TTTATAGCTGCCTTGT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GTAACAATGGCAGTAC	ref_4561_missing	9	14	11	6	21	13	20	15	14	10
TATCTCAGATATAACG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
TTTTGAGTTTGCCACG	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
CATACGATCCCACCCT	ref_4561_missing	0	0	0	0	0	0	0	0	0	0
GTATTATTGACAACAT	ref_3991_missing	0	0	0	0	0	0	0	0	0	0
GCTGCTACCCTCCGTA	ref_3991_missing	305	56	397	331	38	284	50	305	52	236
CTCATTAAGCCATCGC	ref_3991_missing	205	37	255	230	19	223	46	226	32	178
ACTTGCTTTGGCCGAC	ref_3991_missing	1459	161	1851	1666	199	1454	196	1417	172	1252
CATGTCATTGAGCTCT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TGTTAGCTCGAGATCT	alt_4403_missing	5	18	3	11	12	7	15	4	13	8
TCATATACAGTAAGGT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
ACAGCTTCGGTGTGTT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TGGTTGGCTTAGGCGT	alt_4403_missing	3	4	1	1	2	0	1	2	2	3
TTATTTCCTTCCCCTA	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TTCTCGGTGGCAGCCT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
CTGCCTTAATGACCGC	alt_4403_missing	5	12	4	4	5	3	7	3	20	9
GCCACATATGTGCGAG	alt_4403_missing	1	0	0	0	2	0	2	0	0	0
CTCGCTACTTCAATAA	alt_4403_missing	0	10	0	3	3	1	5	4	1	0
CATTTATTGTTGTCGT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
CTGGAAACGGTATAGT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
ATACTCATGCGATGTA	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
ACCAGCGACCGGTGAT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TGTTTCTTGCTATGTT	alt_4403_missing	1	2	1	0	4	1	3	4	1	0
TGAATTTGGGGGAGTG	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
CACAACTTCTGCTACC	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
CATAGTTATAGTGGCG	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
CTCGAGTATACTTCGG	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
GGGTGTCGCACTGCCG	alt_4403_missing	15	21	8	11	39	7	24	14	31	11
GACGTGTCTACCTAAC	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
ATTTCGGGTGGATGGG	alt_4403_missing	5	6	7	5	8	7	15	2	16	3
AGTTATACGTGTGCGT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TGTTATCTATGTTGGC	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TTAGAAAACTAACCAG	alt_4403_missing	11	27	8	8	30	7	23	14	24	10
ATCGTTCTCTTCATTG	alt_4403_missing	37	68	34	40	75	40	59	44	71	36
CTCCATTATTGCCCTT	alt_4403_missing	5	9	1	0	6	0	11	0	6	0
GCCGAGATACCGCAAT	alt_4403_missing	0	4	4	1	1	0	4	1	3	4
CTGGTCGTTTATGGAC	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
GCGTCGCCGTTTGGTA	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TCGTCAGCGGAAGATC	alt_4403_missing	5	21	9	5	11	6	13	7	14	6
AGCCCTGGCTAAAAAG	alt_4403_missing	3	14	11	4	8	9	16	8	15	9
TTCTTGTATTGTTTCT	alt_4403_missing	10	24	18	14	28	19	22	15	32	11
ACCTCGGAATTCGGTT	alt_4403_missing	7	25	12	15	25	10	19	9	28	8
TGCGGGTGGCCGTATT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
GTCAGTTTTGCACTGC	alt_4403_missing	1	6	1	2	3	1	2	0	3	3
TTGTGCTTTCCCTCCC	alt_4403_missing	5	13	6	3	17	8	15	5	11	7
CTTACGCACGATTCGA	alt_4403_missing	10	23	11	8	27	16	29	8	37	7
GTTCCATATATCAGTT	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TGGACCCCAACGCAGG	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TGTAAGCATTGTGAAT	alt_4403_missing	44	66	42	41	82	31	76	35	87	29
CAGTTCCGTTTTGACC	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
GTAGGCCAATGTCCTC	alt_4403_missing	0	0	0	0	0	0	0	0	0	0
TAACCGCGTCGTACTG	alt_4403_missing	9	8	10	5	6	4	8	3	13	4
AGGCTTCGTACATCGT	ref_4063_missing	0	0	0	0	0	0	0	0	0	0
ATCCGCCGATAATTTC	ref_4063_missing	0	0	0	0	0	0	0	0	0	0
ACATCTTCAATGGGGA	ref_4063_missing	36	43	54	44	40	40	41	46	43	34
GATTTAAACTACCGTT	ref_4063_missing	46	61	45	38	52	43	43	41	58	35
CCTGTTTGAGGCGGGA	ref_4063_missing	4	8	4	4	7	0	6	4	9	2
TAGTTGCCCACTGCGT	ref_4063_missing	8	15	7	10	16	13	8	5	8	8
ATTATGGCGTTGGCCA	ref_4063_missing	0	0	0	0	0	0	0	0	0	0
CTTGGCGTTTTGGAGA	ref_4063_missing	0	0	0	0	0	0	0	0	0	0
GTACGCGAAACGCAGG	alt_2381_missing	22	45	29	23	30	14	40	13	35	16
TTGACGTCCAACATCT	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
AGGATCATGGTGGTCA	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
GAGTACAATGCATATC	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
GTCTCTGCTCTGATGA	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
ATGCATAAGGTTACCC	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
TATCTTCTCGAAGTGC	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
GTTTTTGCTGAAAGAA	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
TGCAATAGCGACGTGA	alt_2381_missing	6	5	17	4	12	5	11	6	15	6
CCTCTCATAGTTGGCC	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
ATATTGTTTATGTGGA	alt_2381_missing	16	24	11	8	21	6	16	8	22	10
CTTTCCATGCTTACGG	alt_2381_missing	1	3	3	1	1	0	1	2	5	1
TACAGTGGGACTTATC	alt_2381_missing	5	8	9	10	10	5	15	11	11	7
TTCCATTTTGCTTTGC	alt_2381_missing	7	4	8	3	12	7	5	12	17	7
TAAATTTCGAAATACG	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
TCTGCTAGCTTGAATT	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
AATGAAGATACATGCA	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
AGCGTAATTTGCTTTC	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
CGATTTGGCTTCCTCT	alt_2381_missing	10	14	27	22	29	25	20	14	28	23
GACTTTCGACATGTCT	alt_2381_missing	0	0	0	0	0	0	0	0	0	0
TAGGAAGTTCTTATAG	alt_2381_missing	6	13	11	6	5	3	9	5	5	10
TATATTCCGCGAGTCG	alt_4300_missing	12	10	13	9	11	13	25	7	14	7
GCCTATCCAACAAATC	alt_4300_missing	0	0	0	0	0	0	0	0	0	0
GTCAGTGGCGTCGACT	alt_4300_missing	24	61	37	27	59	18	71	23	68	16
CGGCACACGTTTTTCA	alt_4300_missing	2	8	7	5	10	6	8	8	13	3
TAAGCCGTTCGTGGCG	alt_4300_missing	17	37	17	13	27	18	34	11	37	22
AACCTCAGAGGCGGGG	alt_4300_missing	12	36	18	27	37	15	25	12	36	21
ATTAGACCCCCTACTT	alt_4300_missing	0	0	0	0	0	0	0	0	0	0
CCTAATGTGCACATTC	alt_4300_missing	37	104	52	65	117	51	117	38	117	42
ATTAGGAAAGCTGCTA	alt_4300_missing	13	17	18	5	25	10	22	14	41	6
GGATTAGGTCCCATTA	alt_4300_missing	49	100	60	48	95	70	91	53	105	47
ACGTGTGCTGCGGCGG	alt_4300_missing	0	0	0	0	0	0	0	0	0	0
TTGGCGATTTACACCT	alt_4300_missing	24	58	37	39	41	31	58	29	49	26
AAAACTTCCCGCTACT	alt_4300_missing	0	0	0	0	0	0	0	0	0	0
ACATGTCAGTAGGAAT	alt_4300_missing	0	0	0	1	0	0	0	0	0	0
AGTGCGAAGCACAGAC	alt_4300_missing	14	41	23	20	26	18	30	22	28	21
TTGATGAATTCTGACT	alt_4300_missing	30	64	54	40	60	36	59	27	57	39
CCAAATGTGCACATTC	alt_4300_missing	0	0	0	0	0	0	0	0	0	0
CACTCCCGCATATGAT	alt_919_reverse	9	38	15	12	43	10	65	8	49	3
ATTCCTGATTACACCA	alt_919_reverse	0	0	0	0	0	0	0	0	0	0
CACGTAATTCCGAATG	alt_919_reverse	39	29	55	44	56	37	38	38	42	36
CAGGTCCATCAACTTA	alt_919_reverse	3	12	15	3	14	7	13	4	10	2
TATCGATGTCGGGCGC	alt_919_reverse	149	173	196	152	152	132	133	152	155	130
GATACGCGATTATTTC	alt_919_reverse	10	10	9	11	17	11	10	8	8	13
CCCTGGTAACGTCGAC	alt_919_reverse	16	35	14	22	21	14	31	14	27	11
GGAGCGGGTTTTATAT	alt_919_reverse	35	44	57	50	34	35	47	40	51	35
TATGATTCCTCTGAAT	alt_919_reverse	36	34	44	36	49	31	44	29	43	31
ATCGGCAGCTGTTATT	alt_919_reverse	21	24	31	23	27	38	28	32	26	29
CACTAATAACGTGGAG	alt_919_reverse	28	40	36	29	30	51	21	30	26	28
CTGCCTTGGCGTGGAT	alt_919_reverse	13	21	10	15	15	14	14	11	15	15
CAGGTTCACTCGGTAC	alt_919_reverse	0	0	0	0	0	0	0	0	0	0
TCAAGATATGGACATT	alt_919_reverse	0	0	0	0	0	0	0	0	0	0
GCGCTCGAATGGGTCC	alt_919_reverse	42	34	61	29	32	41	40	37	40	39
CTCAGCCACCTCCCAC	alt_919_reverse	26	30	35	31	37	19	43	14	30	31
TTTGCGTTGTTTCTGG	alt_919_reverse	72	65	95	68	73	79	81	74	84	64
ATCGCTATTAGTGACG	alt_919_reverse	28	54	48	37	54	42	57	23	52	40
GTCGCATGCTTTGAGC	alt_919_reverse	63	61	60	62	66	40	64	49	63	40
CTCCATCTTTCCAACA	alt_919_reverse	255	342	238	261	337	232	317	181	315	169
TGACCATAGCCAGCGG	alt_919_reverse	12	10	14	7	8	3	5	7	14	8
TTCAGGCATTCTTGGG	alt_919_reverse	55	50	54	47	65	30	58	42	38	38
TTCACTGGACCATAGT	alt_919_reverse	37	30	31	24	48	45	41	30	36	43
AATATGCACCCTTAAG	alt_919_reverse	0	0	0	0	0	0	0	0	0	0
TATAGGGATGTACGTA	alt_919_reverse	37	30	28	24	24	31	29	33	30	21
ACTTGGACGGCTTAAC	alt_919_reverse	119	112	141	129	113	96	112	125	120	129
CTTTCACTCCCTCCCG	alt_919_reverse	146	313	158	141	247	149	304	144	315	121
TGGCGTGCCTCGTGAG	ref_4487_missing	40	42	36	17	30	24	36	36	30	37
AGGCGAGACCTTTGGT	ref_4487_missing	23	36	28	25	30	19	29	15	35	9
GCCTTACTTTCCTAGT	ref_4487_missing	20	19	19	12	23	9	29	11	28	12
CCTCTAGTCTTAACCG	ref_4487_missing	20	42	22	22	48	21	46	21	52	24
CGTAATACGAGCTTAA	ref_4487_missing	18	33	39	36	31	27	28	23	26	22
GATATTGTGGCCGCTT	ref_4487_missing	46	55	36	37	73	28	66	38	60	34
GCACATCCCCAGGTCC	ref_4487_missing	3	6	3	0	5	0	2	0	3	0
CACTCGGCCACGGGTC	ref_4487_missing	26	23	25	8	23	18	31	16	27	13
GTTTTGCAACTATCAT	ref_4487_missing	7	14	9	12	24	5	19	21	19	9
TTCTTGCACTTGGTTT	ref_4487_missing	16	15	14	12	30	13	25	26	25	12
TTACATTTAGTCACAT	ref_4487_missing	0	0	0	0	0	0	0	0	0	0
CCCCTATTTAGTGCCA	ref_4487_missing	0	0	0	0	0	0	0	0	0	0
CACTTATCTCAAATGA	ref_4487_missing	0	0	0	0	0	0	0	0	0	0
CTTCACTGGTACGATT	ref_4487_missing	6	12	12	12	13	13	17	4	12	11
CGTAATTGTTGATATG	ref_4487_missing	32	49	28	42	52	37	74	27	35	25
GCATACGCATCATTTA	ref_4487_missing	7	13	11	14	17	17	11	10	18	9
GTTTGCTACGGATATA	ref_4487_missing	3	3	4	4	3	2	7	1	4	5
CGGGGGGGCTCAGTAA	ref_4487_missing	26	27	34	32	24	24	35	21	48	19
GTATCTTTTGTACTTG	ref_4487_missing	5	2	6	5	5	11	7	6	6	3
GGCCTGAGTTAGTGTA	ref_4487_missing	0	0	0	0	0	0	0	0	0	0
ATTACGCCTTGTGCTC	ref_4487_missing	0	0	0	0	0	0	0	0	0	0
CACGGTCTTCAGTATA	ref_4487_missing	32	58	41	23	35	30	44	31	36	33
GCGTTTTAGCTTAGAT	ref_4487_missing	18	29	23	20	28	20	38	23	28	23
CGGATCGTTTAATGAC	ref_4487_missing	32	42	25	33	47	36	40	23	44	24
TCTTGCAGTTTGAGAC	ref_4487_missing	121	142	108	66	165	76	156	88	174	71
AGTGTTGTTATGAAGT	ref_4767_missing	13	6	9	7	9	10	8	10	6	7
AGTCCAATTCCCTGTC	alt_2108_missing	0	0	0	0	0	0	0	0	0	0
TCCCGCTGACTGGTCA	alt_2108_missing	0	3	1	1	2	1	2	0	2	0
TTCGGCCATTTAGGGA	alt_2108_missing	0	0	0	0	0	0	0	0	0	0
CATCATTTGTTGACTA	alt_2108_missing	0	0	0	0	0	0	0	0	0	0
AACTAAGTATTCCACC	alt_2108_missing	0	0	0	0	0	0	0	0	0	0
ACTTTTCAGATGATGT	alt_2108_missing	25	24	15	13	16	11	22	18	30	20
CCGTGCGTTAGGGGCG	alt_2108_missing	9	8	7	3	7	5	10	5	9	11
ACCATGGCTCCGCACT	alt_2108_missing	0	0	0	0	0	0	0	0	0	0
CCACTAAGATCCGTGA	alt_2108_missing	0	0	0	0	0	0	0	0	0	0
GCCAAGTACTGGGTGA	alt_2108_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGTGCAGCCATT	ref_5125_upstream	17	13	33	24	21	21	18	38	20	23
CCATACTGTATGTCCC	ref_5125_upstream	9	15	15	7	13	11	16	8	29	4
TAGTAGGCCTTCATTA	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTGTCACGACTGG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TAGTAGGGGGGACGCT	ref_5125_upstream	83	48	101	108	48	88	64	78	61	76
CAGACGTGGCTCTGTA	ref_5125_upstream	37	14	29	32	11	18	13	11	13	16
GGTCTAGTGGCTCATC	ref_5125_upstream	74	51	97	69	46	76	48	74	54	59
TTTTTCATAAATATGC	ref_5125_upstream	22	13	33	25	12	14	13	17	20	27
GTATTATGATTCCGGC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
GAAGTCTTGATGAGGA	ref_5125_upstream	118	61	126	108	59	92	73	100	91	73
CTGGATGATAAGCTCC	ref_5125_upstream	30	10	37	48	15	37	32	35	19	29
CTCGGATTTTAGCATC	ref_5125_upstream	75	46	87	70	42	47	35	65	53	60
GTGCACCCCCTAATTA	ref_5125_upstream	37	46	27	31	48	30	36	28	45	36
CTTATAGTGCCGATGG	ref_5125_upstream	14	8	24	20	14	27	11	12	21	10
CAAGCATCTGTGCAAG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TGGCGCTCGGCACAGG	ref_5125_upstream	217	104	250	226	101	184	113	213	107	184
CTCAACAGTGATGTAC	ref_5125_upstream	53	46	56	63	31	60	41	45	58	53
TAATGCGCTCCTTCGA	ref_5125_upstream	25	21	34	34	38	37	15	42	24	33
ATACCTTAACTAGGCA	ref_5125_upstream	99	45	109	134	76	76	57	102	69	82
ACTCTATCGTGGTACC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
AGTCATCCCCGTACTC	ref_5125_upstream	43	65	45	53	52	33	68	35	54	38
CCGGTTATCGCCCTCG	ref_5125_upstream	2	3	8	7	3	7	8	0	4	2
TTGTGGTATCAGTTTG	ref_5125_upstream	29	19	50	22	13	28	18	35	21	27
TATACTTTGCTCAAGT	ref_5125_upstream	74	41	103	91	50	68	44	62	39	56
ACTCTTTCTATCCCGG	ref_5125_upstream	51	30	45	53	25	49	27	33	18	37
GTACTGTAAGACTTTG	ref_5125_upstream	60	27	66	66	33	56	37	64	36	59
AACTGGGATCTTTTTG	ref_5125_upstream	665	293	799	707	310	612	304	640	329	610
AATGGCGGTTTCGATC	ref_5125_upstream	33	20	45	22	17	37	17	28	20	29
GTCATTCCGCGCCCTA	ref_5125_upstream	6	4	10	3	6	9	6	8	2	3
TGCGACCGTGATCCGT	ref_5125_upstream	67	29	82	62	34	54	41	59	41	60
GTAAGATCATAAGGTG	ref_5125_upstream	37	25	82	36	23	41	41	34	31	35
TGTATTGGCGGTCCCT	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
AAGTATCGGCAGATAC	ref_5125_upstream	154	85	202	191	105	167	94	173	112	139
TTTAGGCAGCTGTAAC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TTAGAAGTTAAGCCGC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
ATCATGTGCAAATTTG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTCATTTACTTGT	ref_5125_upstream	19	14	23	25	20	13	21	20	14	28
GTGCATGTTTCATATG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TTTTAGTTCCTGCTTG	ref_5125_upstream	22	11	34	27	12	21	14	16	11	18
CCGTAGTCCATATTTG	ref_5125_upstream	68	66	77	87	86	36	85	84	86	58
ATTTTTGGAGGTACTC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TCTTTCGCTGATAGCT	ref_5125_upstream	33	27	39	37	19	31	14	31	19	27
TGAATTAATTCATTTG	ref_5125_upstream	52	31	71	66	31	51	38	61	31	43
TGGCCAAGATTGTCTT	ref_5125_upstream	10	6	6	7	6	7	9	4	10	12
CTATGAATTTTGGATC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TTTCGTCCCGTTTTTG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TTTGCTCCGCGCGGTG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
GATGAGACGCGCCATG	ref_5125_upstream	91	48	123	95	67	94	66	85	69	79
CGGTTCTTTTGTAGCG	ref_5125_upstream	129	78	157	122	116	125	84	91	109	115
CTTAGTAGTAATTTCT	ref_5125_upstream	72	50	107	79	47	79	71	73	69	52
GAACGATGCCAGCTAG	ref_5125_upstream	40	24	40	48	31	42	19	40	38	42
CCTCATGCCATGGCCC	ref_5125_upstream	107	59	98	88	65	74	65	102	58	72
TCCTCTCTGATTCTAC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TGTTGCGTCCTGAGAA	ref_5125_upstream	12	10	8	15	6	10	6	9	9	12
GGGGCCGGTATGTGGT	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
CAAGGAGAGAGTTCGT	ref_5125_upstream	23	14	31	32	24	29	25	31	19	35
CCGGTACGGAACGAAG	ref_5125_upstream	14	13	20	19	17	20	21	17	26	16
TCAAAGATGCTGCTAG	ref_5125_upstream	74	31	70	61	22	67	44	59	30	63
TAGACAAGCTTCTTCG	ref_5125_upstream	36	13	40	34	27	40	21	33	24	28
TCAAGACGGGTTTTTT	ref_5125_upstream	30	25	47	58	21	45	20	31	29	42
TCGATTCCTAGCGCAG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
CTATAGGTCGTTGTCC	ref_5125_upstream	93	90	118	100	100	88	106	115	94	91
CCGTTAACCCTCTCTT	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TGTGTCTCTCACGAAT	ref_5125_upstream	19	18	29	29	17	18	17	17	26	13
CACGTTTTTTGTGTAT	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TAACAGAATGTCCCCT	ref_5125_upstream	11	6	22	12	13	18	15	20	16	19
TGAGATATCTATTTAC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TACCTTTTTGAGAAAT	ref_5125_upstream	25	16	35	35	17	35	27	25	10	31
TAAGCGTGTCCTACCC	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
AGGCTACTCACGCCGT	ref_5125_upstream	133	86	167	127	91	93	83	129	79	89
GCGCCATTTCTTTGTA	ref_5125_upstream	42	24	48	48	26	36	25	23	32	37
TACTGGGCTGCAACAC	ref_5125_upstream	53	33	69	54	32	53	33	55	37	45
GACTGTCTGGGTTCAG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
ACATCATTAGTTGAGA	ref_5125_upstream	209	129	260	222	109	225	129	222	119	166
TGCCAGCCGGTTGGTA	ref_5125_upstream	19	15	16	12	7	20	14	14	15	24
TCGTCGGCTGTGATGT	ref_5125_upstream	83	69	111	96	58	103	61	92	62	79
CCTGTTTAGGTGGATG	ref_5125_upstream	43	21	32	38	23	42	21	30	37	42
TTTAGCGTTAATGTCG	ref_5125_upstream	336	171	402	323	184	293	201	305	189	280
ATTTCCGTCGATCTAA	ref_5125_upstream	18	7	12	8	7	8	4	16	5	7
CCACCGCTATTATAGA	ref_5125_upstream	10	21	9	11	11	11	13	8	28	15
GGTCTTGGGTCTCTGT	ref_5125_upstream	48	60	61	63	40	36	46	44	53	47
CCGTTGCCCGCAATTT	ref_5125_upstream	5	1	4	6	0	6	0	5	4	2
TTATTACACCGTTAGC	ref_5125_upstream	49	34	64	56	29	42	29	59	25	48
GGCTTTGTAGTCAGAA	ref_5125_upstream	75	44	110	84	41	83	49	93	47	71
GATTATTATTTAGTAT	ref_5125_upstream	95	47	90	85	56	75	62	97	52	62
TGTAGCGGTCTTTTAA	ref_5125_upstream	61	52	90	65	41	65	33	68	41	64
TTCTTTTTTAGCTCAG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
AAGAGCGCGACTACTC	ref_5125_upstream	16	9	24	19	8	26	15	21	22	18
CCAAGGATGCCCTACG	ref_5125_upstream	56	31	60	57	30	55	26	54	36	44
GCCATTTACTGGCTTG	ref_5125_upstream	139	95	234	187	87	137	99	129	101	134
TGCCAGTTGTTTGCGA	ref_5125_upstream	90	91	139	97	101	100	93	88	99	84
CCCAATACCGTTCGTA	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
CCGGATTTTAACCTGC	ref_5125_upstream	3	11	2	2	13	5	9	1	6	5
GGTTGTTTGCACTGCT	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
TCCATCTCTAGAACAG	ref_5125_upstream	0	0	0	0	0	0	0	0	0	0
ATTAATTTTCCATATC	ref_5125_upstream	9	15	26	13	4	7	11	9	8	9
AGCCCACTACTCTGTA	ref_5125_upstream	251	143	318	308	126	258	161	277	163	250
ACCATTATTCATTCCC	ref_5125_upstream	40	30	59	33	24	39	24	45	17	19
TGTTGAGCTGAGCGTG	ref_5125_upstream	53	42	63	52	38	51	40	40	33	42
ATCGACCCCTAGGCCT	ref_5125_upstream	185	114	260	179	104	244	119	185	117	185
GTGCCGACTTTTCTAT	alt_4308_missing	113	120	154	136	140	126	167	116	145	110
ATCATGCTCATCTCCT	alt_4308_missing	16	22	12	5	16	14	13	9	16	13
ACGCGCCATATGCAAT	alt_4308_missing	0	0	0	0	0	0	0	0	0	0
GTCTGGTCCCACCCGG	alt_4308_missing	22	20	23	15	35	26	18	18	24	13
TACGCCACGCCTTACT	alt_4308_missing	0	0	1	3	1	0	0	0	0	2
CCGTTCTAGTGACTAC	alt_4308_missing	8	13	19	6	9	3	16	8	16	4
GTTTATGTTTCCAGTT	alt_4308_missing	8	8	17	6	9	5	5	8	10	10
TGGATATGCGTACTTT	alt_4308_missing	15	22	23	19	30	16	37	15	37	18
TTTCCGTTGTTCGCTT	alt_4308_missing	230	382	260	234	381	225	418	246	399	216
GGGTTACAGTCTGATG	alt_4308_missing	61	79	73	55	84	49	76	47	83	53
GCTCTATAGATAACAA	alt_4308_missing	3	2	3	3	1	1	8	1	6	0
CTAGAGGGATCTCTCT	alt_4308_missing	0	1	2	0	2	0	1	0	0	0
TGGGATGAATCCCGAT	alt_4308_missing	0	0	0	0	0	0	0	0	0	0
AATGAAGTCGAAGTTA	alt_4308_missing	13	7	11	9	11	9	16	17	8	10
AGGGAAGAGCCCTGGC	alt_4308_missing	0	0	0	0	0	0	0	0	0	0
GTGATAAAAGATTGGC	alt_4308_missing	43	56	47	36	67	44	58	52	71	29
CGATTTCCACCAGAAT	alt_4308_missing	77	132	111	79	119	66	135	84	134	74
CAGTTTATTTGCAGAC	alt_4308_missing	26	41	45	30	35	31	61	26	57	21
TATCCGGGGTCACTGC	alt_4308_missing	37	57	53	41	75	37	84	41	68	30
AGAGCTTATTGTAGCA	alt_4308_missing	10	8	10	1	14	3	14	5	10	9
AGCACTCCGTTTTAGC	alt_5689_new	1	0	0	0	0	0	0	0	0	1
ACCGGTGCAATGCCAG	alt_5689_new	22	16	41	29	11	27	21	23	21	28
TGGCGACTTCTAGCCT	alt_5689_new	55	34	81	57	23	69	26	65	18	50
TTAGAGATTGCTCTCC	alt_5689_new	58	20	67	45	31	64	32	41	29	51
ATACCACGATCGTTTA	alt_5689_new	20	7	31	12	16	25	7	15	8	22
CTGCTGCCTTACTCCC	alt_5689_new	25	8	15	12	13	12	7	17	8	14
CGGAGGTTTCCGGGTG	alt_5689_new	11	3	14	21	6	12	10	26	9	13
TGGCTATCGAGCTGAA	alt_5689_new	32	6	51	46	16	43	20	48	10	43
CTCTGTCTCAGGGTTC	alt_5689_new	11	8	7	5	7	5	3	7	3	9
GGTCATGCTATTTAAA	alt_5689_new	225	93	249	233	92	225	93	184	104	189
CATTAATGAATCGACA	alt_5689_new	0	0	0	0	0	0	0	0	0	0
GCGCAAGTGCGTTAGA	alt_5689_new	0	0	0	0	0	0	0	0	0	0
GGCGTCATCAAGTGCG	alt_5689_new	54	27	96	74	26	68	29	63	38	52
TCCGAGTTTTCAGCCA	ref_203_missing	0	0	0	0	0	0	0	0	0	0
CGTTCCGCCTCCGGCG	ref_203_missing	3	4	2	3	6	5	1	7	5	4
TTATCCGGGCGAGATC	ref_203_missing	0	0	0	0	0	0	0	0	0	0
CGCTACTTCGTTACCT	ref_203_missing	0	0	0	0	0	0	0	0	0	0
TACTCTTTCGATTGAT	ref_203_missing	0	0	0	0	0	0	0	0	0	0
CACGTCCATCGGCCGG	ref_203_missing	0	0	0	0	0	0	0	0	0	0
TACAAGCGATTCCGAG	ref_203_missing	0	0	0	0	0	0	0	0	0	0
GTAGGTGGTGATGGCC	ref_203_missing	0	0	0	0	0	0	0	0	0	0
GCAACAAGTTTCGCAA	ref_203_missing	0	0	0	0	0	0	0	0	0	0
ATCGATAGATCACACT	ref_203_missing	0	0	0	0	0	0	0	0	0	0
TCTTTGGCGTGTACTT	ref_203_missing	0	0	0	0	0	0	0	0	0	0
CAGCCTTTGCTAACCA	ref_203_missing	5	5	13	12	10	6	5	6	12	9
ATCTCGTGGGGCTCTA	ref_203_missing	4	2	4	4	6	5	6	0	7	2
GTCAATTCTGCCGGTC	ref_203_missing	4	3	2	0	0	1	4	2	5	4
GTTAAATATATAAGTA	ref_203_missing	0	0	0	0	0	0	0	0	0	0
TGTCCGTCGCTTGCTA	ref_203_missing	0	0	0	0	0	0	0	0	0	0
GAGTCTTGTGTCGGTT	ref_5908_new	3	7	2	6	4	0	3	1	4	2
TTCCTCGGGAACGGGA	ref_5908_new	19	26	15	10	24	11	12	9	13	10
CTTCCATCGTTTAGTT	ref_5908_new	2	3	2	0	5	2	1	0	1	2
TGATTTGGTGAATTTA	ref_5908_new	7	9	6	5	11	4	17	5	10	5
AAATGCGTGTATGAAC	ref_5908_new	4	12	7	4	6	10	1	3	14	6
GTGTTCTTGTAGTGCG	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GCACTCGTATACTGCT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
CGTCCTCTCCGTTGTT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GGAATGGATGTTCAGC	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TGTGCCGGATTGCCCC	ref_5908_new	5	16	5	6	8	5	18	6	11	5
TTCTGGTTAAGCTTTA	ref_5908_new	25	33	19	17	32	22	39	21	32	16
GAGACTTTCAGTTCTA	ref_5908_new	2	1	0	2	0	3	1	0	2	1
TATGGGATTCTCCACC	ref_5908_new	0	0	0	0	0	0	0	0	0	0
CAGCCACTCGCGTTGC	ref_5908_new	0	3	1	2	8	2	4	2	8	2
GTGGTGTAAATCACTG	ref_5908_new	0	0	0	0	0	0	0	0	0	0
AAATTCTGTGTTCTAT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GGGGTTACGAGTTCTA	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTAGTTTCAATGTAGG	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TCGAGCACGGCTCGTT	ref_5908_new	5	10	6	2	7	5	2	4	7	5
ATGCTAATGGCCGCTT	ref_5908_new	28	35	35	39	44	40	44	24	34	28
AGTGGGTGATCTATGA	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TTTGCCCAGGTTCAGC	ref_5908_new	13	19	17	2	13	7	10	14	24	12
CTGAGCTAAGGTACAA	ref_5908_new	7	17	22	11	15	9	16	11	23	5
TAGCTTAGAAAGCACA	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTGTGTATTCATTAAA	ref_5908_new	32	34	40	19	40	23	43	22	40	24
TAGACTTTAACTCTTA	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTTTGGCTGGGTTATG	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTTCCTTATGGCTGTT	ref_5908_new	3	5	7	11	13	7	13	7	9	4
CTCCATATGGATATCC	ref_5908_new	24	51	39	30	62	31	42	31	48	29
AGCGTGTGTTCCACGT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GCACTCGTATGCTGCT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
CTACACGTAATTCTAG	ref_5908_new	9	18	18	11	29	8	21	6	24	13
TTCGCTTCTCCGCAAG	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TAATAGATCCTTCTTC	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GGTGTTTTCCGATGTG	ref_5908_new	2	0	1	0	3	3	3	1	0	1
TCTAGTTCTTAGTCCT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTCAGAGCCTTGTGAT	ref_5908_new	13	37	21	23	40	26	53	13	52	18
GTTTCGTGCTAGAGAG	ref_5908_new	12	11	22	12	13	8	14	15	18	12
CGGCCAGGCCGAGCAT	ref_5908_new	3	3	1	2	2	0	7	3	5	3
CCCATATGCTCCCCCG	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TACACCCTGGATACGT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TCTGTTTTCTAGAACA	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GACTGGTTACCCCTAT	ref_5908_new	0	5	2	3	0	1	3	1	3	1
TATATACATACAGCAA	ref_5908_new	1	1	0	0	2	2	1	2	2	0
CGCAACTCCTCTCGCC	ref_5908_new	2	16	5	1	6	1	10	0	17	4
CTTTGTGTGGCGGTGC	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTCGGACCCACACTGA	ref_5908_new	0	0	1	0	2	0	0	0	0	0
CCTGTATACTTCGACA	ref_5908_new	1	1	1	2	14	4	7	2	13	1
GGTGTCATGCTTAGCC	ref_5908_new	9	15	8	7	6	6	7	7	6	2
TTTTGTCCCGGGTACA	ref_5908_new	16	25	19	18	31	32	24	23	33	20
TTTTCTCCCTATAGTT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
CAGCGAGAACCCTTCT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTAGCTTATAAATATG	ref_5908_new	11	22	16	21	36	12	24	17	18	9
CTCTATTCCTTCGGTA	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TACAGCCATCTTGCCA	ref_5908_new	0	0	0	0	0	0	0	0	0	0
TCCGGATAGCCTGCCT	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GTTTATGCAGATCCGC	ref_5908_new	0	0	0	0	0	0	0	0	0	0
GGCTCTAATAATTTCA	ref_5908_new	25	56	26	38	56	38	59	24	62	32
GAGACTCTCTGCACAT	ref_5908_new	4	4	7	1	9	6	6	6	12	3
CCTGTCTTTTACGGTA	ref_5908_new	4	23	13	6	20	4	24	12	18	10
TCTGTATCTTGTATGT	ref_5908_new	1	3	11	9	13	8	11	10	10	5
TTAGCGTGCTCCTAAG	alt_3683_missing	11	13	13	12	14	4	28	12	20	12
TTTCGTTTCAGGGGCC	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CTATAGGGACTCCCCC	alt_3683_missing	2	3	4	2	6	2	9	3	6	1
TCCGCCACATTCCAGT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CATATAGCGAGGTTAC	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
GTGTTATTGAAGCTCC	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CACGTCCTCTTTTACC	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
TGCAGTGCACGCTGCA	alt_3683_missing	7	6	4	4	13	6	11	5	13	4
TGAAGAGTCTTCATCC	alt_3683_missing	6	6	1	7	2	8	10	6	4	6
AACGCCTCGTTCGATG	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
ATTGCCACGACGACGC	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
ATTGCTGATATTTGTG	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
TCCGGGGAACGCCCCT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
GTCCACCTATGGACCC	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
GCTTGAGTCTGTTTCG	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CGCCTAAGCAAAATCC	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
TGATACCGTGTTCGCG	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
ACACCGGCACCCATGT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CAAGCATAACGATTTG	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CGGAGATATTTCATGT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTCTTAGTACAT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
ATACTATATCTTCCTT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
TTAGCGAGCCTTCCCG	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CTCAGCAGCATGTTCT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CCAGATACCTTGCTCC	alt_3683_missing	0	3	0	0	13	1	10	0	8	0
TAGGCCATATATTCCT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
ACCAGGTGAGTCAGTA	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
GTTGTTATAGGCTCTC	alt_3683_missing	2	4	0	0	4	3	9	2	8	4
CGTAGTCGCGATAGGT	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
AACGTCTCGCGGTGTA	alt_3683_missing	0	0	0	0	0	0	0	0	0	0
CCCTGTAGGTGTCTGT	ref_2415_missing	18	36	25	18	26	17	26	15	38	18
CATTCCCCGTGCTTCC	ref_2415_missing	40	68	45	45	91	35	74	39	96	41
AACGAATCAATGTAAC	ref_2415_missing	40	67	56	34	65	31	62	26	72	44
CAGCAAGGACATAGTT	ref_2415_missing	3	12	9	12	20	8	19	7	24	10
TAGTCCAGTGGCGCAT	ref_2415_missing	0	0	0	0	0	0	0	0	0	0
ACATTCACGTGGGCTG	ref_2415_missing	3	5	4	2	2	1	13	4	7	4
GTTGGTCCCTTAAATA	ref_2415_missing	0	0	0	0	0	0	0	0	0	0
CTTGAAGAGACGGTTC	ref_2415_missing	0	0	0	0	0	0	0	0	0	0
GTCTGCATGAAGTTTG	ref_2415_missing	19	30	24	23	31	33	58	14	44	13
GGTGGGTTATCTAAAC	ref_2415_missing	46	72	52	56	86	43	87	45	86	51
TTCCATGTTTCCCACT	ref_2415_missing	10	9	16	8	12	10	22	15	20	15
CGTGAGATTTACTTTG	ref_2415_missing	96	209	138	114	195	81	201	101	220	93
CTCCAGTAGGGTCAGA	ref_2415_missing	5	7	4	2	2	1	3	3	5	5
ATAAATGAGTGTCGGC	ref_2415_missing	7	7	4	1	5	4	6	4	17	11
TGACATAGTCATCAGT	ref_2415_missing	0	0	0	0	0	0	0	0	0	0
GCCCGATTGCCACAAG	ref_2415_missing	32	64	34	40	68	35	48	35	84	39
GCAAGCTTAGCTGGTG	ref_2415_missing	8	19	13	8	8	9	15	8	19	7
AGTTTTGCGGTGTTAT	ref_2415_missing	23	52	33	34	60	30	51	24	64	28
TGTGCCTTGGTCGAGC	ref_2415_missing	0	0	0	0	0	0	0	0	0	0
CTGCTGTCACGAGCAT	ref_2415_missing	11	17	6	8	9	11	18	7	18	7
TAAATGAATAGCGAAA	ref_2415_missing	26	34	21	23	35	20	37	20	36	23
TATTTAGATTCCGCGG	ref_2415_missing	17	38	32	26	40	28	35	20	35	21
GGGTGACACATAGCGA	ref_2415_missing	12	25	10	12	15	12	23	8	20	11
TTAGTCCCATCATGTC	ref_2415_missing	14	24	24	29	32	12	23	13	26	16
GAGATTTGCATCCTTC	ref_2415_missing	29	41	29	32	46	31	55	32	53	17
CCGACCGGCTGGATTT	ref_2415_missing	8	15	12	6	26	12	19	11	23	12
GTTCCACCGTGTCGGT	ref_2415_missing	51	74	48	41	81	44	72	57	95	51
CGGAACGCTTCGTCGT	ref_5718_new	66	66	85	78	81	75	79	67	103	77
TCGGGAAGATCGGCGC	ref_5718_new	24	22	32	18	21	32	17	34	22	23
TGCCGCAGTGAACGTG	ref_5718_new	58	75	88	87	84	80	88	71	105	50
AAAATCGTGCAGTTAC	ref_5718_new	13	33	17	17	25	17	27	25	30	21
ATGTGCATAGGACAGT	ref_5718_new	0	0	0	0	0	0	0	0	0	0
TTCCCTTGAACTCGTT	ref_5718_new	201	253	272	191	229	164	262	154	264	152
GCCGCATCTAGAACGA	ref_5718_new	0	0	0	0	0	0	0	0	0	0
GTTGGCGGTAGTGTCA	ref_3493_missing	7	9	6	3	7	0	9	7	5	4
ATGACGCTTATTCGCG	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
TGTCGCATCGGGTCCT	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
TCCATCGCCGCAATAG	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
GTAACTGCCGTGGATT	ref_3493_missing	8	8	9	3	5	4	8	3	6	9
ACCAAGCAGAGTAAGC	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
GGTAACGTTCGTTTTA	ref_3493_missing	4	6	3	4	4	9	8	8	16	5
TCTAGTCCTGTCGTGA	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
TGGTGGATCCGACACC	ref_3493_missing	17	30	32	30	31	24	42	26	35	19
TTTCCTTTTTGTGGGA	ref_3493_missing	15	13	22	12	23	17	19	10	23	22
GAATTCGCAAGACGGT	ref_3493_missing	14	10	12	10	18	17	19	10	13	12
TGCCGCTCTGCTGGTC	ref_3493_missing	3	4	2	5	0	3	5	9	10	2
ACTTCTGGCTGGATGA	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
TACCATTCACCACAAA	ref_3493_missing	3	11	9	5	12	7	7	8	9	4
GGCTAGTTGCTAGCTT	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
TCACAAGCCAGTAGTT	ref_3493_missing	6	9	8	4	15	9	14	10	13	6
TTGCCGATTTTTTCAT	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
TACTGTTTAGTTCGTT	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
GCAGGCCATGCCTAAA	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
CATTTGCTTTCGCTCA	ref_3493_missing	0	0	0	0	0	0	0	0	0	0
AACTGGCATGTCCGGA	alt_5730_new	0	0	0	0	0	0	0	0	0	0
TACTATCTAGCTTACT	alt_5730_new	15	14	23	15	26	14	16	7	23	12
CGATACCGGTTAGTTA	alt_5730_new	12	21	13	9	14	10	24	18	25	7
GTTGCGTCCATTATAG	alt_5730_new	2	1	1	0	4	1	1	2	3	2
TGGACTACCCACTTCA	alt_5730_new	47	60	54	51	49	32	64	47	58	34
CATTTTAGGATTTAAA	alt_5730_new	0	0	0	0	0	0	0	0	0	0
AGCAAACATATTTTGG	alt_5730_new	21	41	33	26	23	29	44	22	30	31
TCGACGATTAGGAGGT	alt_5730_new	0	0	0	0	0	0	0	0	0	0
GCTTTTGGTTTTGTTT	alt_5730_new	24	24	20	27	23	26	38	17	29	25
TTATTGCTCCACATCT	alt_5730_new	9	19	14	7	16	9	16	7	16	5
TATATAATTATTCTTG	alt_5730_new	9	18	10	11	19	10	13	11	13	6
ATCCTTCTACGCCCCT	alt_5730_new	19	24	10	11	21	14	17	17	16	12
ACTCCGTAATCTGTTT	alt_5730_new	87	119	102	61	117	73	108	65	111	78
CGTGCAACTGGCCGTA	alt_5730_new	36	62	39	27	42	38	40	29	44	29
ACAAGGTTCTTAATGC	alt_5730_new	14	21	21	18	21	9	20	12	17	8
TAGCGTTTCGGGTCTT	alt_5730_new	15	25	15	20	22	22	35	19	33	15
TTACTTAAGTTTTGGT	alt_5730_new	16	29	31	19	37	23	33	27	49	13
ACTTTACTAGCTCTGA	alt_5730_new	15	26	26	21	15	6	26	12	10	10
TATTACGAACTCACGC	alt_5730_new	8	24	20	7	20	7	16	15	20	23
AGACTCGCGCTTATAG	alt_5730_new	0	0	0	0	0	0	0	0	0	0
TCCTATAACAGAGTGC	alt_5730_new	0	0	0	0	0	0	0	0	0	0
GTTGTACCAGACTCCA	alt_5730_new	0	0	0	0	0	0	0	0	0	0
GGCTTGTCCTCGATAT	alt_5730_new	13	22	17	12	33	17	18	14	32	12
ACCGTGTTTCCTAGCA	alt_5730_new	31	40	29	23	39	18	33	17	44	17
ATTGCTTAATGAGATG	alt_5730_new	24	29	27	24	33	22	35	11	46	15
TTCAGTTTGTGCCCTG	alt_5730_new	16	11	11	13	25	10	9	13	20	8
GCGTTTTCTTTCATTT	alt_5730_new	0	0	0	0	0	0	0	0	0	0
TTATTGCGAGCTATGG	ref_221_missing	50	43	53	52	49	50	39	49	35	39
ATTGTGCATTGCGGAT	ref_221_missing	9	10	13	21	16	13	15	9	12	16
GAGTCCCTCTTCCAAA	ref_221_missing	110	115	138	114	113	108	106	105	113	94
CTGCTTCCGTCGGTTT	ref_221_missing	0	0	0	0	0	0	0	0	0	0
CGAATCTTGTATGCAC	ref_221_missing	163	175	197	166	169	146	144	147	176	134
AGTCAATGCGTAAAGT	ref_221_missing	10	9	8	8	8	15	12	2	8	6
CGGACTATATGACGCG	ref_221_missing	7	18	7	11	15	16	10	7	13	15
CGATCCACACTCGTCT	ref_221_missing	6	1	3	4	3	3	3	3	4	1
TTGTCTTATGCAATTT	ref_221_missing	2	3	3	3	6	0	5	1	4	3
CTCAGGCTATGCGAGA	ref_221_missing	43	33	59	44	33	48	39	37	35	25
TTCTTGCTACGTACCC	ref_1285_missing	0	0	0	0	0	0	0	0	0	0
TTGCCTCACTTATCCG	ref_1285_missing	3	9	1	2	1	0	6	8	1	4
CACATGGCGTCCCAAG	ref_1285_missing	21	26	35	29	37	30	38	25	49	21
GACTCATTATCAACCA	ref_1285_missing	21	49	37	22	51	23	37	24	57	26
ATAATAGGAGTCAGGC	ref_1285_missing	51	105	45	62	80	37	101	27	115	40
ATAACTCGTCGAAATG	ref_1285_missing	1	5	3	4	8	0	5	1	2	4
CAACCGTACTGTTCGG	ref_1285_missing	0	5	0	1	1	2	1	0	2	0
ACGTACGTCTATCTAC	ref_1285_missing	0	0	0	0	0	0	0	0	0	0
AGCTCGGTTCGATGTC	ref_1285_missing	0	0	0	0	0	0	0	0	0	0
ATCTTTTTCAGTCTGT	ref_5315_missing	8	6	7	8	9	8	9	3	13	7
GCATCATGTCAATGGT	ref_5315_missing	0	0	0	0	0	0	0	0	0	0
CTCACGTAGAAACATG	ref_5315_missing	0	0	0	0	0	0	0	0	0	0
TTAAGAGCACCGTAAA	ref_5315_missing	106	110	155	114	116	120	127	118	123	105
AATCAAAATAGCGAGC	ref_5315_missing	19	18	15	10	26	18	10	17	8	6
CGGCATTCTGCAAACT	ref_5315_missing	3	2	7	6	7	5	5	5	5	9
CCGCCATTCAGTCTAA	ref_5315_missing	8	10	10	16	10	9	13	9	21	7
GCCAACATCGTGGCTT	ref_5315_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGTTATGTATCA	ref_5315_missing	0	0	0	1	0	0	0	0	0	0
ATGACGACGGGCGTAT	ref_5315_missing	28	22	25	27	26	25	22	26	24	32
GCCCAATGACATAAAT	ref_5315_missing	0	0	0	0	0	0	0	0	0	0
GTGTAAGTTTGGGCAG	ref_5315_missing	0	0	0	0	0	0	0	0	0	0
GCAGTCCACTAATCAA	ref_5315_missing	61	103	118	76	83	55	89	86	100	61
AATGGTAGAACTCATC	ref_5315_missing	30	38	31	30	37	31	45	30	28	37
TATGTTGGTACCTGAA	ref_5315_missing	0	0	0	0	0	0	0	0	0	0
GGCGCGATCGTGGGTC	ref_3354_missing	43	38	53	59	64	47	42	47	57	41
GACTAGGTCACCGGTT	ref_3354_missing	0	0	0	0	0	0	0	0	0	0
TAAGTTGTATCCCCGA	ref_3354_missing	0	0	0	0	0	0	0	0	0	0
CCATTGTTGCATGGGT	ref_3354_missing	113	119	119	123	112	87	139	115	118	80
CTGTACGGCTTGTTGG	ref_3354_missing	136	143	194	140	154	135	151	122	177	128
TAAGGAAAATGTAACG	ref_3354_missing	0	0	0	0	0	0	0	0	0	0
CATCGTAAATACGGCT	ref_3354_missing	65	49	66	50	68	49	66	64	60	38
CTGGCCCGTCATGTCT	ref_3354_missing	141	124	127	120	124	120	123	137	117	126
TTTATCAATATAAACC	ref_3354_missing	10	25	27	18	19	17	26	15	27	14
GCTGTGGTACGGTCAT	ref_3354_missing	61	83	59	50	78	49	71	78	57	55
TTCATCACATGACTGC	ref_3354_missing	0	0	0	0	0	0	0	0	0	0
ATGTCAGCCAGAGCGG	ref_3354_missing	51	59	67	51	66	61	74	51	55	55
CGTCGCATTCATTTCA	ref_3354_missing	85	82	96	74	100	55	81	81	92	73
TGCGTCTCCCGTAGGT	ref_3354_missing	24	21	28	27	32	27	38	24	32	32
CCGCCTCTCCTGCTTT	ref_3354_missing	9	35	7	10	42	15	54	17	50	8
CATTGAGCCTCCGACT	alt_4103_missing	1	1	2	1	1	0	2	2	3	0
AAGCTTAAAGCCGATT	alt_4103_missing	4	8	5	6	9	5	7	7	4	7
TTGTCCCTTCTGAATT	alt_4103_missing	0	0	0	0	0	0	0	0	0	0
TTCGCTGGGTACCGGT	alt_4103_missing	0	0	0	0	0	0	0	0	0	0
TCATCGAGCGCGGCTG	alt_4103_missing	41	51	58	35	49	43	48	36	63	52
CTTATGACGCACTGTG	alt_4103_missing	8	30	27	22	28	16	29	13	44	17
ATAGTTCGCCTCGCAT	alt_4103_missing	16	18	25	10	21	13	30	15	27	17
GACCTCGCACCGTATT	alt_4103_missing	37	56	45	38	68	39	58	37	49	21
TTGCCGCCCAGTTCAA	alt_4103_missing	74	77	104	83	92	56	92	75	108	75
ATCTCTTAGATGTCTC	alt_4103_missing	0	0	0	0	0	0	0	0	0	0
GGGCACTGCTCGGTGT	alt_4103_missing	0	0	0	0	0	0	0	0	0	0
GGCCACTCCCTGCTCC	alt_4103_missing	0	0	0	0	0	0	0	0	0	0
TCGCGTTAAGCACTTT	alt_4103_missing	9	8	7	7	9	7	11	5	2	2
ATTGCTACCGCTAGCT	alt_4103_missing	7	18	10	13	18	13	14	13	13	12
GTCTCATTAAGGCGAT	alt_4103_missing	11	16	18	13	11	21	12	9	18	5
AGCGTGGTCTAGGTCC	alt_4103_missing	25	16	18	5	28	12	13	12	28	3
CCGCTCGCTTCCTACC	alt_4103_missing	47	108	65	61	86	60	122	60	95	57
ATGCGGCAAATTCTAC	ref_2983_missing	165	67	180	127	103	151	90	154	72	169
TCCGCTATAAGCTTAC	ref_2983_missing	46	20	37	35	36	41	25	42	27	32
AAGAGAGTGATCTTTG	ref_2983_missing	34	13	39	36	14	31	14	33	22	27
TGTCTCTTTACCGCCA	ref_2983_missing	43	31	56	47	17	46	23	41	34	26
CGTACCCTGGCTTTGC	ref_2983_missing	138	74	165	159	77	134	85	144	79	135
TCTTTTATTAATAATA	ref_2983_missing	27	20	25	22	15	16	15	22	12	15
AAAGTGTGTGTTCCTC	alt_2983_missing	35	23	63	49	38	47	28	42	31	41
TGTAAAAAAACTTGCT	ref_2983_missing	7	16	16	13	2	9	7	9	9	6
ATTTACTTCTTTACGC	ref_2983_missing	59	37	80	64	34	61	26	49	39	45
CTACTGATAACTGACT	ref_2983_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTCGGCTATCTA	ref_2983_missing	66	37	89	62	33	72	42	78	32	59
TCGCACGCTCTGTGGA	ref_2983_missing	116	57	128	129	69	112	56	90	50	115
ATAGTCAGTCCGGCCG	alt_4767_missing	2	1	4	5	0	2	1	0	6	2
CCAGTTCAATTGTTAT	alt_6122_new	14	8	5	10	7	5	12	4	14	5
CCTGGGTTCCATGGCC	ref_6122_new	10	14	10	15	8	14	20	8	11	7
GTTCGCTACTTTTGGC	alt_6122_new	9	25	17	19	22	19	27	15	24	9
CGTAGCAAGTCGGATT	alt_6122_new	0	0	0	0	0	0	0	0	0	0
AAAGCATAAACACTTC	alt_6122_new	79	103	90	51	85	68	120	67	74	73
AGGCGCAACATGATGA	alt_6122_new	55	73	75	45	75	47	85	50	91	59
TGTGCTTCAATTCTAG	alt_6122_new	7	24	16	15	19	11	18	9	20	6
GTTTTAATTGGTCGTG	alt_6122_new	76	125	83	74	143	79	151	60	172	59
AGCCTTCCGATATCCA	alt_6122_new	1	7	5	3	1	2	3	5	2	7
CGCTCGCAGATCAATT	alt_6122_new	4	12	4	3	5	3	2	5	10	8
CGCGCTATCGCAGATT	alt_6122_new	13	18	18	13	22	10	19	12	16	11
CCGTTGGCGGTTTCGA	alt_6122_new	6	22	11	8	24	8	22	7	14	12
CGCAGGTTGCGTGTAG	ref_6122_new	71	100	88	64	94	73	97	44	102	63
GGCATGCCTGGCATCT	ref_461_reverse	55	40	66	58	33	52	32	51	48	51
TACCCTTCTAACATTG	ref_461_reverse	287	233	374	306	249	313	276	312	246	237
GCCAAGCCTTTGCCCT	ref_461_reverse	48	73	69	62	104	41	103	49	108	44
ACCACACGTAGGTCGT	ref_5800_new	18	38	26	28	28	21	37	36	45	27
GTCGTCAGTGTGATTC	ref_5800_new	0	0	0	0	0	0	0	0	0	0
GCGAAAGCATCTTAAA	ref_5800_new	50	47	36	25	53	46	33	43	56	29
AGCTACTGTCTGTTTG	ref_5800_new	82	95	84	74	91	66	103	69	92	56
CGACATCCCGGATTGA	ref_5800_new	119	94	141	141	108	97	110	132	122	109
GTTGACTTGTGCATAA	ref_5800_new	54	45	57	45	39	41	33	45	55	34
GTCTGACTGCTGGAGC	ref_5800_new	10	10	7	9	4	6	16	5	5	6
CCAATTCATGTAACCT	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
TTATCCCCGCAGATTC	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
GCCACAGGTTCCTTGT	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
GCCACCCGGCTCCTGG	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
CTGCTCCTGATAGCTA	alt_4798_missing	0	5	3	4	6	1	0	3	4	2
TCTATACACGCGAGGC	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
ACATCGAACTCTAGAA	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
TTCGTGGGCACTACGA	alt_4798_missing	3	13	5	6	7	7	6	5	4	11
CATAGTAACTAACTGG	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
CCCTATTATAGGAGAC	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
TGTTATCAAGCGTGTA	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
GTCGTAAGGAGTCTGG	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
TGGAGTCCGGCCGGCA	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
AATGCTATCCCGTGGC	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
AGGCACTAACAGATAA	alt_4798_missing	0	0	0	0	0	0	0	0	0	0
CCCACAGACGGATCAC	alt_4798_missing	11	19	8	9	5	2	7	11	12	6
AGGTGTTTCGTCTATG	ref_711_missing	0	0	0	0	0	0	0	0	0	0
TAATGACTCTAGACTC	ref_711_missing	0	0	0	0	0	0	0	0	0	0
CACGGAAAAGGCTTGA	alt_5171_missing	59	74	84	65	78	56	73	52	95	41
AGTACCATATTGCTCT	alt_5171_missing	28	38	31	26	48	24	51	23	46	13
TCAACAATAGGTGACG	alt_5171_missing	101	141	108	94	119	74	147	80	128	71
CTCTGGAGAGCTTCAG	alt_5171_missing	33	33	20	18	46	11	39	13	29	17
AATTAACTTATCGGGG	alt_5171_missing	9	7	12	12	11	8	18	14	9	12
CATACTTAATGTTCAG	alt_5171_missing	25	40	43	32	58	39	60	28	60	36
ACACGCGATTTAAGGC	alt_5171_missing	45	46	78	55	55	59	72	57	67	49
GTCCAGATGTTCATCT	alt_5171_missing	29	34	28	33	42	32	42	25	61	23
TAGATATAAGTTTGCA	alt_5171_missing	8	16	10	11	16	7	19	9	17	10
TTCCCATCCAGGGGCC	alt_5171_missing	3	10	3	2	6	4	7	5	5	6
TTAGTTGAGGCAAAAA	ref_5171_missing	18	24	23	14	27	18	32	13	32	20
CTCTTTTTCGCATTGC	alt_5171_missing	70	120	91	66	92	67	115	64	123	58
TGCTGCAAATTTCGTT	alt_5171_missing	17	32	35	22	35	26	32	16	34	12
TTGTTCCAGGTGCTCC	ref_863_missing	18	15	14	7	12	7	26	8	25	7
TTATGTTTCAGTGGGG	ref_863_missing	0	0	0	0	0	0	0	0	0	0
GATTATACCACGGTGA	ref_863_missing	71	71	94	83	100	67	104	49	107	72
TTGACCACGTCCTCCA	ref_863_missing	18	18	20	16	17	9	17	13	16	22
TGCCTCAGCTTCTTAT	ref_863_missing	21	27	25	18	23	23	21	14	30	13
TCCTAAAGCCTTCTCG	ref_863_missing	0	0	0	0	0	0	0	0	0	0
GCTTCCACAGACTGAT	ref_863_missing	15	19	12	9	24	11	36	9	29	16
CATACGGATCGTTAGT	ref_863_missing	108	165	139	115	144	97	161	96	149	132
TACCTTTGAAGACGAC	alt_5835_new	4	8	4	2	9	4	1	0	5	6
CTCACTGCCGTAATAG	alt_5835_new	4	3	8	3	5	0	3	1	4	1
GTCTCTCCGTATTTCC	alt_5835_new	20	30	29	16	35	24	35	24	33	25
TAGCCTTACATGCGAT	alt_5835_new	14	22	10	7	22	18	23	3	25	9
GCAAGTGAACATGTAG	alt_5835_new	33	30	39	22	45	20	39	23	42	31
ATGGCTGTTTTAGTCG	alt_5835_new	7	28	16	5	16	11	21	14	21	12
TTGATAATTAGTGGTT	alt_5835_new	8	14	6	10	17	1	7	6	9	5
AAGCTCAATATATTTA	alt_5835_new	0	0	0	0	1	0	0	0	0	0
ATTTTTTACACATGAC	alt_5835_new	3	12	17	7	11	7	13	7	19	7
CCGGTTAGACAGTGTA	alt_221_missing	5	27	7	6	19	4	21	7	13	2
TTGCCATTATTTTTCC	alt_221_missing	18	19	29	24	31	19	43	25	20	22
CCATCCTTCTTCTTGG	alt_221_missing	0	0	0	0	0	0	0	0	0	0
ATGCGGTCTTGGCTCA	alt_221_missing	13	13	25	23	15	16	16	8	15	14
TGATTGGCTCGCCGTA	alt_221_missing	14	11	11	13	19	13	5	16	21	7
ACTTCGTGTGTGCGGA	alt_221_missing	53	58	70	54	60	55	66	43	62	44
GCCATGCTTTCATTAT	alt_221_missing	6	9	9	6	10	6	6	8	8	7
TGGTTTTTAGGATAGC	alt_221_missing	21	18	24	21	27	20	12	16	25	18
GTGGCATCACAACTTG	alt_221_missing	18	24	20	20	22	18	22	12	23	25
CCATCTGTTTAGGTGA	alt_221_missing	0	0	0	0	0	0	0	0	0	0
AGGGTAAGTGTTTTTA	alt_221_missing	0	0	0	0	0	0	0	0	0	0
CTGAGCCGTCGCGAGT	alt_221_missing	16	21	19	13	24	16	22	12	23	13
CGCAAGACCGCCTATA	alt_221_missing	0	0	0	0	0	0	0	0	0	0
GTTTTGTACTCCCTGA	alt_221_missing	29	53	53	38	37	30	41	33	56	33
CCGATAATCTGCTCCA	ref_4235_missing	0	17	3	4	11	2	15	4	18	1
CTATCAGTCGTGCGTA	ref_4235_missing	0	0	0	0	0	0	0	0	0	0
GGGAGATAGGTCAGCA	ref_4235_missing	6	4	8	6	11	10	13	6	8	11
TTAGCTATACGTAAGT	ref_4235_missing	1	1	6	2	2	2	5	2	2	3
AGGTTTTGGTCCGATT	ref_4235_missing	18	28	17	23	30	31	34	18	38	18
GCTCGCCATGTCTAGA	ref_4235_missing	0	0	0	0	0	0	0	0	0	0
GGGCGTTTACTCGACT	ref_4235_missing	5	11	8	10	18	8	9	10	20	7
CTGTTACTGGACGCAG	ref_4235_missing	31	42	33	30	39	22	21	26	35	25
GAGCCAGTACCCCGCA	ref_4235_missing	0	0	0	0	0	0	0	0	0	0
GTTCGATTTCTTCACA	ref_4235_missing	1	2	3	4	3	0	3	1	5	3
ATAAGTGACCGGTCTA	ref_4235_missing	3	14	5	4	15	11	8	13	16	9
CGTCTTTCGCTCTGGG	ref_4235_missing	28	35	24	33	41	14	42	18	51	24
CAAGGTCGGGCCCAGT	ref_4235_missing	11	22	10	17	17	17	13	15	16	9
GCCACCGCTTCATGCG	ref_4235_missing	6	17	13	7	7	7	21	8	18	5
ACTGCATGGCCCCAAT	ref_4235_missing	8	17	12	12	18	5	12	17	13	9
TTCCAAATTAGCTGAG	ref_3342_missing	0	1	3	0	4	1	2	1	8	0
TCGATAGAACCCAATA	ref_3342_missing	6	17	13	10	16	10	20	8	10	2
TGTCCGAGGAGATTCA	ref_3342_missing	46	78	49	52	70	53	91	49	96	48
CAGGTCTCTCGATCCA	ref_3342_missing	50	62	62	43	74	36	66	27	90	39
TAATTAAATCGAAAGA	ref_3342_missing	0	0	0	0	0	0	0	0	0	0
CGACCTAGTCGGGGAC	ref_3342_missing	41	101	49	31	98	32	96	31	91	26
GCAGGTCTTCAGCAGG	ref_3342_missing	11	32	16	13	22	7	18	8	22	8
TAATCGGCGTGTCTCC	ref_3342_missing	0	0	0	0	0	0	0	0	0	0
CGCCCAACCCCGTTTT	ref_3342_missing	3	6	7	2	5	3	8	3	6	4
CACGGCTAGAAAATGG	ref_3342_missing	17	31	27	27	40	31	28	23	17	16
CTTTTCCGCACCCGCG	ref_3342_missing	21	23	17	6	25	13	22	15	19	16
TAATCTTAGAAACATT	ref_3342_missing	1	1	0	2	0	0	0	1	5	0
TCATTAGAATTTGGTC	ref_3091_missing	36	56	42	34	54	43	50	26	34	26
TTTCGCCAGGCTAGAA	ref_3091_missing	0	0	0	0	0	0	0	0	0	0
ATCGATCCTGGCCGGC	ref_3091_missing	22	33	15	22	18	13	29	19	30	18
ATCCTATGTCTGCTGA	ref_3091_missing	10	16	12	11	6	8	12	5	14	13
GGATTTTTCTAGCTGC	ref_3091_missing	37	37	40	35	36	37	38	27	62	30
GCACCCGCAGCACTAC	ref_3091_missing	29	53	34	22	52	27	37	21	45	22
CAATTATATTTCTCTT	ref_3091_missing	36	28	46	51	41	33	32	40	37	27
ATTCCCATTTAGCTAG	alt_5732_new	11	17	5	13	3	13	7	11	15	8
GCTTAGTCGTCCGGTA	alt_5732_new	0	0	0	0	0	0	0	0	0	0
CTTACGCGGATCCACG	alt_5732_new	0	0	0	0	0	0	0	0	0	0
CAGTTTGCTTTACCTA	alt_5732_new	49	59	74	40	73	32	74	34	65	38
AAAACTATCATCACGG	alt_5732_new	0	0	0	0	0	0	0	0	0	0
TAGTCGGTACGCGGTG	alt_2496_missing	50	91	63	51	93	56	85	39	100	59
CTCATGGTTATATACC	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
ATACACTTACGTTGAA	alt_1454_fdr	15	9	15	5	6	12	14	21	8	13
AGTCTGGCCTCCTTTT	alt_1454_fdr	172	84	213	178	89	171	98	132	90	140
TCGATCCCATGGCTTC	alt_1454_fdr	89	30	109	87	30	73	50	65	40	65
GTAAATTCTCTTCACT	alt_1454_fdr	13	4	18	15	6	6	3	11	6	16
GCCACACAACCCAGCT	alt_1454_fdr	28	17	30	47	26	14	22	29	24	22
AAGAGTGGGGATACAC	alt_1454_fdr	57	30	44	53	34	40	34	36	25	35
CCTTCTCTTCTGAAGC	alt_1454_fdr	0	5	2	0	1	1	1	1	3	1
CAATGACAACCATAAC	alt_1454_fdr	276	148	345	256	161	237	164	253	172	243
GAAGTCTTACTAAAGG	alt_1454_fdr	93	68	118	87	62	98	67	122	65	114
CTGACTGCCAGAGAGT	alt_1454_fdr	85	54	80	85	63	61	64	58	50	79
AGACGTTCGTCCTAAA	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
CCCCGAGCGCGAAGTT	alt_1454_fdr	63	28	76	52	21	63	24	52	39	48
GATAGGAGGTATCATG	alt_1454_fdr	49	39	85	52	33	60	35	61	35	48
ACGTTGCTGACGCTCT	alt_1454_fdr	97	44	119	87	55	90	56	94	64	77
AGAACATTAACCGAAA	alt_1454_fdr	38	27	39	25	28	36	23	24	23	21
CGGTTGTATGTATCTT	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
GGTTATCTTTTGTCGC	alt_1454_fdr	56	20	92	54	25	50	29	48	26	48
ATTACTGCTTGAGCGG	alt_1454_fdr	9	5	11	7	4	13	6	10	4	4
ATGGAGTTTATGTAGA	alt_1454_fdr	33	15	41	23	21	15	22	30	24	36
AGATATTGCTACGCTT	alt_1454_fdr	45	32	41	47	18	37	29	30	17	50
GATACCCTCAACATTG	alt_1454_fdr	119	68	156	130	69	122	61	101	84	107
GGTATTTAGTGATACC	alt_1454_fdr	54	35	81	69	20	41	35	42	45	50
TACGTTAGCGTTTGAT	alt_1454_fdr	102	68	133	117	67	122	94	96	57	99
GTCCTTGAATTCAGCC	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
CTAGACATTAAGTTTC	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
CCCGCTCGTGTTTGCG	alt_1454_fdr	58	40	73	64	43	42	52	66	42	67
TTCGGTGGTTTGGTTC	alt_1454_fdr	29	18	35	27	31	25	18	34	24	22
CCTCTGGATCGTGTTG	alt_1454_fdr	60	39	90	89	50	76	31	66	40	57
GGAACGCCTAGCGAAG	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
ACAATATCGTGCCAGA	alt_1454_fdr	119	68	145	135	69	97	81	108	96	91
CTCATGGTTCTATACC	alt_1454_fdr	207	145	245	233	154	208	162	194	164	197
GTTGCACTTCCCGTAG	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
TGGCGCGATTCACAGT	alt_1454_fdr	10	15	12	11	9	9	7	9	9	16
ATTCTCAGTGTTGCCC	alt_1454_fdr	38	34	54	56	26	40	24	41	29	35
GTGACGCCAAAATCCT	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTTTCGTTTATCG	alt_1454_fdr	41	48	45	41	39	36	35	44	43	43
CAACTCAGTTAATATT	alt_1454_fdr	137	71	150	160	86	121	80	132	82	119
CGCAGTTTCCCACTGT	alt_1454_fdr	425	222	494	408	247	392	245	386	271	373
GAAACAGTCAGTCGCT	alt_1454_fdr	171	105	196	161	122	179	93	135	131	151
TGAGAGTCGGATATTG	alt_1454_fdr	53	26	52	54	32	46	37	50	31	51
GTGATGCATATTTCCG	alt_1454_fdr	25	15	19	26	18	25	14	25	14	14
GAACAGGGACCAAGAC	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
GAATTAATCCTCAGTG	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
GAATTTCACTCGCTCG	alt_1454_fdr	28	14	22	29	11	20	21	25	14	21
AATATATTGCTCTTGC	alt_1454_fdr	0	0	0	0	0	0	0	0	0	0
AGAGAAACTTCCCAAC	alt_1454_fdr	21	20	32	37	12	32	15	33	15	15
GTATCGTATGGAACAA	alt_1454_fdr	68	35	69	67	38	74	39	84	41	69
TTGGTGTTTGTCCGGG	alt_1454_fdr	59	40	81	54	29	56	37	49	57	54
CAGCCAGTCATTCTTC	alt_1454_fdr	9	41	20	20	43	13	39	13	41	6
ATGTAGCTATTCTTTA	alt_1454_fdr	31	35	41	29	22	48	33	35	27	35
TTGTGTTATCTTCGCC	alt_1454_fdr	73	35	74	52	40	57	25	47	21	48
GTGCATCCCGCAGGTG	alt_1454_fdr	48	38	63	56	29	28	29	30	34	37
TTGGCTTTAATACCTA	alt_1454_fdr	38	19	35	23	19	24	20	19	17	29
CCTTTGGATCCTCATC	alt_1454_fdr	38	39	52	50	49	62	44	47	48	48
GAGCGGAACGTGAGAT	alt_3342_missing	10	28	11	19	25	6	29	9	27	4
CTACACAGGTAGGTGA	alt_3342_missing	0	0	0	0	0	0	0	0	0	0
AAAAACCCTCGGGCAA	alt_3342_missing	5	4	6	6	3	5	10	4	5	2
GTCCTGTATAAATGTG	alt_3342_missing	52	106	70	60	103	74	127	76	115	59
CCGTACCCTATCATCT	alt_3342_missing	18	62	29	25	75	14	67	18	59	8
AGATCGAGTACAGTAA	alt_3342_missing	21	23	23	18	21	14	15	16	35	14
TGGCACTAGGTGTGCG	alt_3342_missing	25	38	18	21	34	17	34	15	38	19
ATCGCCGATGCTTGTC	alt_3342_missing	0	0	0	0	0	0	0	0	0	0
GGTAGAGGGGTTTTAC	alt_3342_missing	17	10	12	6	10	3	12	5	12	7
CCTTTTTCGACTAAGG	alt_3342_missing	2	15	7	0	18	4	15	1	14	1
ACGGCCCCCCTGGCAT	alt_3342_missing	72	86	108	78	119	58	110	47	107	72
TGGAGCGTATGGTCAA	alt_3342_missing	2	7	4	3	5	3	8	4	2	3
AATGTATCTCCGTTAG	alt_3342_missing	33	61	43	41	57	47	72	38	69	27
GTTAAGCCTTCTTCCT	alt_3342_missing	10	8	13	6	14	8	9	11	13	15
GCTTGGGAAGCTTAAG	alt_3342_missing	28	52	33	25	41	25	54	30	50	24
CCCGTAAACTCACTTC	alt_3342_missing	43	87	51	45	65	40	84	47	99	44
GGTGATGGGACTGTTG	alt_3342_missing	0	0	0	0	0	0	0	0	0	0
TTCCGCGAAACCAGGG	ref_5603_missing	0	0	0	0	0	0	0	0	0	0
ATATGCTATCCTCACA	ref_5603_missing	56	60	65	51	55	52	62	48	72	51
CTACAGTTCTTTCGGC	ref_5603_missing	167	186	165	138	174	142	180	161	202	120
TGTTTTTGGTTGCTGA	alt_863_missing	17	21	26	16	15	28	25	14	31	13
GCCTGTTTAAGAGTTT	alt_863_missing	11	21	11	5	17	8	18	12	8	10
TGTCTTCTTTTACCTT	alt_863_missing	58	69	57	63	62	63	76	51	83	55
CAAAGATAAGTTCCTC	alt_863_missing	4	12	5	0	6	7	10	6	4	5
CTCGTTTCTAACCCTT	alt_863_missing	0	0	0	0	0	0	0	0	0	0
CAATCGCTAACGTCCT	alt_863_missing	20	34	21	35	37	18	32	26	17	18
CCCATACTACTTGTTG	alt_863_missing	11	18	12	9	19	5	15	12	22	14
CTTAGGCGTATTTGGC	alt_863_missing	13	7	6	2	10	9	11	9	9	6
AGTGTTCACGGAAGCT	alt_863_missing	8	12	12	10	16	7	9	9	17	15
TGATGCACGCACTATC	alt_863_missing	9	4	16	10	12	14	15	10	8	14
TCGTAATAGTGTGGCG	alt_863_missing	30	55	47	42	67	36	69	28	66	26
CTACTCCGGCTTTTTT	alt_863_missing	4	5	5	5	1	5	3	2	1	1
TGCTTAAATGTTAATT	alt_3354_missing	30	21	31	30	23	9	32	16	23	21
TACGTTTCTGTACGGT	alt_3354_missing	72	92	81	78	72	67	109	52	94	61
AGTCTACTGTCCAATT	alt_3354_missing	18	25	25	23	32	21	50	28	36	26
GTGCGGCGTTTCGGTG	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
CCGCAATTGGCGTATC	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
ACTCTTGTAACCGGTG	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
TGTGTAAGCTAAAGTT	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
TAGGATCCCGTGTCTC	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
CGTCACTGCCAGCGTG	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
GCTTGCAGCATCCCCC	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
GTATTAATGGCGTTAA	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
CAGTACAATTTTAGGA	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
CCGCGTTTTTCGGGGT	alt_3470_missing	0	0	0	0	0	0	0	0	0	0
CCCGCCATCTTTAAGG	alt_2559_missing	10	53	22	11	47	18	44	21	58	20
CGAGCTCGGTTTGTAT	alt_2559_missing	19	18	24	11	24	14	13	15	19	9
GTATACAACCACGGCC	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
CAGTCCTCTTTGCAAG	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
AGCCGGAATTCAGAAC	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
AATTACAGCGTGGGTT	alt_2559_missing	3	5	3	2	1	4	1	0	6	3
TTTTCTGAGAGTTTTG	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
TAAGCATGTTTGGTTC	alt_2559_missing	10	23	14	13	8	12	18	9	15	25
AAGTGTGAAATGGGAT	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
GTCAGTAAAGAGCAAG	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
TGGGGGCTCGCAGCTC	alt_2559_missing	15	11	17	2	9	14	14	12	13	12
CGCTCACACTGTGACG	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
GACCGTACTCGTTTGG	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
ATTTATCGGAGCACTT	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
TTCTAATTGCTTAAAT	alt_2559_missing	0	0	0	0	0	0	0	0	0	0
CCCTCCATATCTCGGT	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
CATTTTCTTGTGGGGG	alt_2559_missing	7	13	12	10	20	11	18	13	22	8
CGGGCCAAGCGGGTGA	alt_2559_missing	10	14	12	13	12	8	24	11	19	16
CATGGTACGTCTGTGC	alt_2559_missing	0	1	0	0	1	1	0	0	3	0
AGCTAAGTGTACGCCT	alt_2559_missing	12	15	12	11	7	21	22	12	14	5
TGTAGTGGATCCGCTG	ref_5681_new	0	0	0	0	0	0	0	0	0	0
TTGTTTTTTGGTATAC	ref_5681_new	3	1	5	1	3	0	5	1	1	2
ATGTCTGCGCGGCTAG	ref_5681_new	5	18	19	26	19	8	24	12	14	12
CCTGGATTCGCCCTCC	ref_5681_new	0	0	0	0	0	0	0	0	0	0
CGCAGAAGATCACGTA	ref_5681_new	0	0	0	0	0	0	0	0	0	0
GGGTCAGAAGAGTTCC	ref_5681_new	5	0	8	1	0	2	4	3	7	0
ACCCTTCGCTTTTGCA	ref_5681_new	36	54	44	33	62	37	48	40	52	32
CCTAAGTTAAGCGCAC	ref_5681_new	0	0	0	0	0	0	0	0	0	0
TGTATTACCTGCTAAA	ref_5681_new	5	14	3	8	20	8	24	7	13	2
GGGCCCCTCTGGTCCA	ref_5681_new	8	15	8	6	15	8	12	7	13	12
CACGGTTCTCATGTTG	ref_5681_new	134	86	151	116	141	122	128	123	113	106
TGGCCCTGTTGAGTAC	ref_5681_new	0	0	0	0	0	0	0	0	0	0
CCTTTCTTATCCACGA	ref_5681_new	3	4	3	7	7	11	9	6	8	5
TGCACGGCTTTTGCAC	ref_5681_new	18	41	28	20	38	23	35	22	53	16
AAAGCCCGACATGGTA	ref_5681_new	20	29	30	27	45	19	44	17	47	25
ATTAAGGCACTTCCTG	ref_5681_new	10	17	16	15	18	9	20	13	29	8
GTCTTACGACCCCCGA	ref_5681_new	0	0	0	0	0	0	0	0	0	0
CATGTCCACTGCACAC	ref_5681_new	2	3	0	1	4	0	5	1	3	0
CAGCGCCGTGTGCATC	ref_5681_new	52	83	57	39	68	46	81	46	81	38
GCAACTATGCTCAGAC	alt_5681_new	171	261	198	186	304	179	298	173	350	174
GTGCATGCGACTTCGG	ref_5681_new	6	5	0	5	10	5	10	1	5	1
CTGGCATAACTAACCC	ref_5681_new	13	21	19	12	24	19	35	8	41	12
TTATGGATACGTTTTA	ref_5681_new	8	21	12	11	17	15	20	6	31	7
TTATTCTAATACAGGT	ref_5681_new	11	14	12	6	20	11	26	12	21	8
ATTTTGTTCTCACTAC	alt_5898_new	24	31	40	49	30	23	44	31	24	22
TAGACGCTACTAATGT	alt_5898_new	0	0	0	0	0	0	0	0	0	0
TCCCGTAAGGTCACAC	alt_5898_new	24	23	20	22	31	20	51	15	23	14
TCACTTAGTGGTGTCG	alt_5898_new	0	0	0	0	0	0	0	0	0	0
CTACTAGGGATGCATT	alt_5898_new	113	153	162	134	161	113	164	117	181	113
CTCGAGAACTCCCGCA	ref_5898_new	52	56	62	46	62	63	69	47	75	41
ACGAGTTATTGGTAGG	alt_5898_new	44	66	46	42	45	44	48	47	46	31
TTGTTCCGTATTCATA	alt_5898_new	23	48	44	44	38	31	55	43	46	31
ATGTTTCTCCGCACCA	alt_5898_new	45	41	42	34	38	43	36	29	39	32
ACTACTTGTCATTTCG	alt_5898_new	30	51	28	26	40	28	45	24	38	22
TATGGATATTCCTTTG	alt_5898_new	82	117	101	90	93	93	102	72	101	83
TTTATCTTAGAAAAAC	alt_5898_new	15	21	11	14	13	13	19	10	20	14
TGGCTACGTATCTAGT	alt_5898_new	25	18	21	26	34	17	38	29	29	18
AACCCGACAACTTTAA	alt_5898_new	0	0	0	0	0	0	0	0	0	0
TAGCCCGTGAATGCAT	alt_5898_new	42	56	52	33	40	44	55	38	66	39
AAGGAGGGCTCACGGT	alt_5898_new	40	43	38	37	45	33	54	54	53	38
TTGGATTACCATGTCA	alt_5898_new	0	0	0	0	0	0	0	0	0	0
TTTGGTTACAAACGAG	alt_5898_new	35	44	45	27	39	18	30	30	41	28
TTGCTTATACGAGGAT	alt_5898_new	185	204	209	154	210	164	224	173	219	146
TTGATGTGTTCTATCG	alt_5898_new	28	26	29	18	40	19	33	19	45	21
TAATGATGGCCTGCCG	alt_5898_new	24	21	15	18	16	18	24	10	18	18
ATTTTTTGATCCGCAG	alt_5898_new	21	24	30	19	36	14	24	16	38	22
TCCCAAGCCACCAAGG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CAGCCATCTTTCTGCC	ref_5652_new	3	3	2	3	3	2	3	3	8	0
GCCGTAACCGTGACAA	ref_5652_new	4	4	6	5	7	5	3	2	6	6
GTCTAGATGTCGCCGT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GTATTGATTACAGTAG	ref_5652_new	2	2	1	5	4	2	4	3	3	0
AGGGCTGTCAGATTAA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TTCAGTAGCGCGTCAA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CAATTATGATGTACAT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GGGGGCTTTGTGACAC	ref_5652_new	5	5	6	5	3	2	2	1	5	3
TGTATCGCGGTCAATC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TATCAAATGGCACTCA	ref_5652_new	21	17	12	15	23	11	16	13	24	18
GCAGTCCGGGGACCCG	ref_5652_new	1	2	3	2	0	5	4	6	4	2
ACACGTCTTTTGTTGC	ref_5652_new	9	7	7	8	11	9	10	8	5	4
CAAATATAGATGAATA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TGGTTGTCAATCACTG	ref_5652_new	11	9	12	5	12	5	14	6	10	10
CATGCTCGGTCTCCTG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TGCGTGTGGTCTCCGC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CTGGCGAGGTCAATTC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GTTATGATATCTTTCG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TCGAGGATCTCAAGGT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CGGGTTATTTGGCTCG	ref_5652_new	3	7	7	12	10	8	4	4	6	5
TAACTCTTCGAGTTGG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
ATCCGTAGTCTCTTTC	ref_5652_new	4	3	5	1	5	6	1	1	3	3
AGGCGCTGCTTTCCCA	ref_5652_new	5	8	9	7	3	9	5	8	10	7
ATTAATGTTATACCAG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GAGTGAACCCGGCGTT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GTTGCACATTGTGACC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GTGGTATAAGAGTGTG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CTTTTTAAGATGTAAC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CTTACCGCATGTACCG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GTTCTAATTTTTGTAC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CGCTATACCCTTCCCT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TAGGTCCCTGTGAACA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GTCTCATCGGACAATT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
AACACCGGGTTGGAGA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GGCACCTTGCTAGACT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
AGATTTTTCGGATGGT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CCCCTAAATGTTTAGA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CATATCAGCGCCACGG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TTAGGCTATCTCATGT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TATTTTCATGAAGTTC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TATCGGTCAGACGCAA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GCATTGATAATAGGAC	ref_5652_new	1	0	3	0	3	1	1	1	3	0
GATTCACACATATGTA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
ATTATAGGGCCTCGTT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CTCGTACTTTGGGCAA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CCAGTCATGCATTATC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
AGCTTCGCTGGCTGAT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GGTTTATTACTAAGAT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
AGGCCCCCCTATCAAT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CGTTGGCCTAATCCAA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CCCGTTTTTGACGGCA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
CAGGGTTAGAATACAA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TACCTTAAGGAGCCTC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
AGATCATGCCCAATTC	ref_5652_new	0	0	0	0	0	0	0	0	0	0
GGCTCATAGTTTGCTA	ref_5652_new	19	20	21	15	24	17	24	19	31	20
ACATCTCATTTTTAGT	ref_5652_new	6	6	7	2	8	7	8	2	7	6
AGAGAGGATTAGGGGA	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TGATGACCGCCGCTGG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TTGACTGCATTTTCTT	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TCACATCCACGGCTCT	ref_5652_new	5	3	6	2	6	4	3	9	4	2
GTTAATCCGTGTGAAG	ref_5652_new	0	0	0	0	0	0	0	0	0	0
TATCTCCACAAAGCTT	alt_5841_new	28	20	29	22	35	22	38	32	32	23
CATAATACTCTCGCAT	alt_5841_new	0	0	0	0	0	0	0	0	0	0
TGCAGTTCCTGAACAC	alt_5841_new	0	2	0	0	1	0	1	0	0	0
AGGGTGGTGGATCTGA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AAAGTATGGCACGTAG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ATTCACATACGCACGG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GTTCTTTTCCGACTGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GGGAATCTTAAGCCGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ATTCGGCAGTGTTCTT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TTCCTTCGAACACAGA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TATGCCCGGTCGCGTT	alt_607_missing	2	9	2	2	9	2	7	1	18	4
CATTTATCTGTATGTT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GCTATTGCATTTTGAG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TTCCTTTCGTTTGTCA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GAGCTGGCTGTCCCGC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AGTAGCCACACCTGTC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GGTCGTCTTGATTAGG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ACTCGCCATAATATAT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ACCATGGTGATTATCA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GATTTCCATAGAGCCT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TTTGAATTATACAGTA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CAGGTTCTCCGGCCCC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TCTTCTGTTATTTATG	alt_607_missing	0	0	0	0	1	0	0	0	0	0
GGTGTTTGGGCTGTTC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GACTCGGAGTAAACGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TCTAAAGAGAAGAGGA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AAGCCTCTTACTGCCG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GCAAATGTACAATCGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ATCATTACTGGGCCAT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ACCAGCCGCCGTAAAG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TTCAACTATAGCGTGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TGAGTTTCCTAAGATA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GGACTTGTGGTGCCGC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CGTGCACGTGTATTAG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TAATGCACCTGGAGGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GCGGATTTCTAGCATA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GTTGTACGCGGAGTAC	alt_607_missing	1	1	0	0	0	1	0	0	0	0
CCGTTATATGCTTCCG	alt_607_missing	0	0	0	1	0	1	0	0	1	0
TAACCTTTTGTATTTC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GCATTCTCATTAGTAA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TTTGCCTACTGGGCAC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CCATAGAGGTTCATTT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CGAAACCCGACGACGC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TGGAATGTTCCTAGAC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TTAACTGATAAAGAAA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CAAGGGACGTCTTTCG	alt_607_missing	1	0	0	0	4	0	0	1	1	0
TTTAGTTCGACTTCGT	alt_607_missing	2	3	0	0	6	1	4	0	1	0
CTTCCATGTATCTAAA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GTAAAGCACAGCGTAA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AGGGCCCCTCGTCGAG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CGCCTGGAGTATCATA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ACAAGTAGGGTGGGGC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AGCTTTCGTGAGCGCC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CCGCCCGGGGTGAAGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TAGTGCTAAGTTTGGT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AAAACACAATCATGAG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AGATCTCTCGCAGGTA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CCGTTTGAGTTAACGC	alt_607_missing	0	0	0	0	0	0	0	1	1	0
GGATGGTGCGCTATTG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TATAAGTACCAGCGCT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TTCATGCTCATTAATT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AGCGGGCTTGGGGTAA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
TGCAGTAATTGGAATA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
GTACGTCCCCTCGTGG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ATAACCTTTGTGCTTC	alt_607_missing	0	0	0	0	0	0	0	0	0	0
CGGTCCTTTGTTATTT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ATTCAGGGTGTTGTAG	alt_607_missing	0	0	0	0	0	0	0	0	0	0
ATTTACTAGAGACTTA	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AGTAGCCCACTCTCTT	alt_607_missing	0	0	0	0	0	0	0	0	0	0
AAGCACGGGGGCGCGT	alt_2983_missing	73	47	86	88	58	78	45	68	43	106
GAAATCGGTCGTGAGA	alt_2983_missing	25	15	40	21	21	19	13	20	25	30
AGCTAAAATTATCGTG	alt_2983_missing	0	0	0	0	0	0	0	0	0	0
AATAGGGAGTATAACT	alt_2983_missing	31	6	29	33	12	27	8	32	30	20
TATTGTCTAAGGTTTA	ref_5898_new	72	94	95	87	86	62	97	76	109	57
AGACACCTCCACCATC	ref_5898_new	7	15	4	10	11	9	8	6	16	6
TACGTTTCTGAGCTTA	ref_5898_new	31	33	45	17	28	22	28	28	32	28
GTACGTAGAGACCGAA	ref_5898_new	25	27	36	26	25	33	42	30	31	29
TCCGATAAACGGAAGT	ref_5898_new	53	67	51	48	57	40	67	44	61	55
CAGACCTTTGGTAATT	ref_5898_new	47	47	40	47	58	27	61	30	57	28
GTTCAGGGGATGCTGC	ref_5898_new	0	0	0	0	0	0	0	0	0	0
CTTGTTTGGGCCCGTA	ref_5898_new	1	6	10	4	8	3	6	4	10	4
GACTCACCCAGAACGT	ref_5898_new	13	34	17	14	38	18	31	22	34	19
GGTATCGCAACTCCTA	ref_5898_new	86	104	104	121	126	70	121	91	124	86
TCACAGTCAGATTGGA	ref_5898_new	0	0	0	0	0	0	0	0	0	0
TTTTTGCATGCGATGT	ref_5898_new	6	6	10	9	7	3	18	7	11	6
GCGCCCAATGCCGTAA	ref_5898_new	37	36	58	33	42	37	37	38	58	40
GCCGTTAGGGCTTATA	ref_5898_new	5	12	20	7	14	14	14	9	23	7
TCTGCCAGGATCTTGT	ref_5898_new	16	14	13	18	19	15	15	17	17	14
ACTAAGCCTCTAACTC	ref_5898_new	0	0	0	0	0	0	0	0	0	0
GCGCGTGTTGCGTCGT	ref_5898_new	0	0	0	0	0	0	0	0	0	0
GCCCTCAAAAACTGGT	ref_5898_new	71	80	85	70	93	68	101	76	78	58
ACAGCACTGCGACGAT	ref_5898_new	33	53	65	49	45	52	60	53	65	40
CCGGCTGGCTAACTGA	ref_5898_new	0	0	0	0	0	0	0	0	0	0
TCACTGTTCTAATTTT	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
CGATAGTTGTCGCAAG	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
TACGGTTCCGTTACGC	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
TGGTCTATTTGTGTAA	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
TAACGCTACCCTTATC	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
CGCGAGCTGACCGTCG	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
CAATTTTCTGGAGCTT	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
GCCTTTGTTTCACTCT	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
ATGCGCGAGTGCCTAG	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
GTCTCGGCATTTATAT	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
CGTCAATTTTGGTTAA	ref_4034_missing	0	0	0	0	0	0	0	0	0	0
CGGAGTATGGTACGCT	ref_3923_missing	20	16	23	48	12	26	8	30	10	33
GTTTTAGGTTCAATTA	ref_3923_missing	83	59	105	115	66	81	65	63	57	96
TTAACGGTTTAGCTCG	ref_3923_missing	1	0	0	1	0	0	0	1	1	0
TTTCAATGAGTAGATA	ref_3923_missing	23	7	30	20	5	21	16	24	19	17
ACCGCTAACCATAACA	ref_3923_missing	0	0	0	0	0	0	0	0	0	0
AAAATATCTTAAGCTT	ref_3923_missing	101	41	119	98	41	89	46	75	36	83
TGCCCGTTACGTGACG	ref_3923_missing	52	24	60	45	15	45	35	36	42	25
AACGTGATGATACTAC	ref_3923_missing	0	0	0	0	0	0	0	0	0	0
ACTAATTAGTGAGCTC	ref_3923_missing	96	50	129	96	54	90	41	83	61	87
ACACGACTTAGGGCTT	ref_3923_missing	34	27	37	32	23	32	23	26	22	41
ACTCCCGCTTTGCTAG	ref_3923_missing	47	69	47	40	62	45	79	41	95	45
CAATCACCGTACGCTT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TTCTGTCGCAACCTCT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GCTAGCGTGGCATTGG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
ATAGTTTGTCTCCCTA	ref_4354_missing	8	17	9	6	24	4	7	8	20	5
ACCCGGTCTGTTTAAA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TATCTTGTGCCGGCTC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GATGTTAATGTTTGCC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GGGCAGTGTCGATCCC	ref_4354_missing	0	1	2	0	5	3	7	3	6	4
GTAGCTTATGGAAAAT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
ACGGCATACCTTTATC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CGGCACTATCCTTCAA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TGTTGGTCTGCGTCAA	ref_4354_missing	25	46	31	32	52	41	55	32	46	19
TCTTTCCGTATGTGTC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CTGTTCGTTCGCTGTT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
AGAGCCGTATGAATTT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GTTGCGGATATGTCTC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GGTGTTTACTTTAGGT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TCCTTACCTTTTCGTA	ref_4354_missing	4	11	0	1	8	1	7	0	9	0
TTACAGCTCTCGACTA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GACGTAGTTTGGGGTC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
AGTTGCATAAGCGATT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
AGCATTGCCCGTACCG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TGGCGTGCGGTCGCCG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
ACGTGGCGTGCGTATT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TCCTAAATCATTGACT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CGTATTCCCGTTACTG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
AAAGCTGTTTTATGAG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CGACGATACTATACTG	ref_4354_missing	16	20	27	17	31	14	29	17	34	25
AGCTGCTACCTGGGCT	ref_4354_missing	5	18	9	8	27	11	23	10	18	8
GCGGTCTTTAAATGGA	ref_4354_missing	7	9	7	4	15	4	11	5	7	5
CTAGCAGCAATCCATC	ref_4354_missing	16	34	17	27	29	21	38	17	23	18
AGTTTAACCGGGATTA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TTTCGTTCGGGATCGT	ref_4354_missing	0	1	0	0	0	1	0	0	0	1
ATACGCCCGGACGCTT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CCTAGGGGTACCAGGC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CATAGTGACGGAATGC	ref_4354_missing	4	13	12	4	9	6	8	3	8	7
GCACGGGTGACGGGCC	ref_4354_missing	7	23	14	6	17	6	21	1	21	3
CGTTTTAAATGGTCGA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TCGAAGCTCAACAGGG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GTGACTGGAACCCCGA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
ATGTAAACTTGACCCG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CGTAGTACATCTTCCT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CTCTCAGTTGGTCGGG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GGTCTCGGGACGCCTG	ref_4354_missing	14	18	11	10	14	12	24	13	27	7
TTTCAGATGGCTCTCT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GTCTTGTTGAGGCTAT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
AGGCAGCGCGTAAAGC	ref_4354_missing	11	15	6	6	18	10	18	10	25	5
TGGATCTTCGCTACCA	ref_4354_missing	3	6	1	3	7	2	12	3	12	3
CCACGTTTAATACTGT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TCCAAGTGCCCATAGC	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
ATTATGGGATAAGTTC	ref_4354_missing	11	11	12	20	20	9	22	7	14	5
ATGCTCAAGGAAGATA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TTCCGTCGGTCTTCGG	ref_4354_missing	0	0	0	0	1	0	1	0	1	0
TGGCTTTTACTGAAAA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
GGCCATGTCACTCAAT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CGCAGGAGTCCAAGTG	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTGGCTTTCGAA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CGTTAATATCGTCATT	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
AGAAGTTCGTCGACGA	ref_4354_missing	8	5	5	6	10	3	6	8	14	3
GCATAATACCCTTATA	ref_4354_missing	0	0	0	0	0	0	0	0	0	0
CACACATACGCTAGTG	ref_6122_new	5	4	2	2	6	5	3	3	0	1
TTCGAGCGGGCGCTTT	ref_6122_new	19	32	18	20	36	20	24	16	29	17
ATGCTGTTCATACCCA	ref_6122_new	86	145	106	107	168	95	170	83	169	97
CGTGGGACCAAAGCCC	ref_6122_new	4	16	14	10	15	8	12	10	15	5
ATTATTCTTGATCGTC	ref_6122_new	4	12	12	10	11	9	14	12	4	8
ACTCCCCGTCGGAGTC	ref_6122_new	0	0	0	0	0	0	0	0	0	0
GATTTTCTTCCCTAAG	ref_6122_new	103	137	103	74	123	71	140	78	117	72
CATCAATCTATAAACT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
GCAGAGTTGTCATACG	alt_4803_missing	11	11	5	6	10	7	19	10	16	6
CAGTGTTTACGTCAAA	alt_4803_missing	0	5	3	2	2	0	11	3	8	2
AAATTGAGAAGTATTA	alt_4803_missing	1	0	3	0	1	0	1	0	0	0
TCTCTCATGGCTCCCT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
GGCTCTTCGTATGGCG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TGGTTTACTGTACTTC	alt_4803_missing	12	36	17	18	32	16	31	17	23	18
AAGCCCTGATCGGAGA	alt_4803_missing	4	6	5	5	5	6	7	5	6	1
CATGTTGGCTCTAGCT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
GTACACACCTGAAACC	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
AGACGAGGATGTACTG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TTTTCTGTTCTCCTTC	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TATAATGGCTACGAGA	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TCGTTTGGTGCTTTTT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
CAACGTAGGACGCTGG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TGGTTCTGGTTAGTAT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
ACGACCATGCATTCAA	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
ATTGGGTTCATGAGGT	alt_4803_missing	9	28	18	12	19	5	19	7	19	7
CCGCACAATTTCCCTT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TTACATAACCAATCGC	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
GTCAAGTCTTACTCAG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
AGTTGTGTCACTAGGT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
CTGATTAGCATGTGAT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
CCGATATGTGGGTTGG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
CTGCGCTTGCTCGGTG	alt_4803_missing	26	27	23	20	23	19	25	9	37	10
CTCAAGAATGTTGGGA	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TTTATGCTTACAAATA	alt_4803_missing	11	11	4	9	17	7	3	12	5	4
CATGGTTTATTTCAGG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TCCCTTAAGTGCTGTA	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
CCTATTTTTGCCTGCG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TTGGTGACCTGCAAAT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TTTATCATGGCAAGCC	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
ACCAGTGATCGCATTG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TCTCCACACGATCCTT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
ATAAGACACTGGCGTG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
AGGGGACGAGCTGATC	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
CATCATGGACATATCC	alt_4803_missing	55	83	96	59	121	52	99	59	116	32
CATGCCGAACACATCA	alt_4803_missing	13	23	15	15	24	15	14	13	21	12
CTAAACGTTTTTAGAT	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
TTAGGGCCTAATAAAT	alt_4803_missing	21	21	18	15	12	12	27	27	27	11
TCTTATGCACTGGTAG	alt_4803_missing	0	0	0	0	0	0	0	0	0	0
GTACCTCGATGGATAG	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
GTTTTCATGATACCGC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
CTGTGATGTGCTCTCC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TCTTCGGGGCTAACAT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
ATCAGGAACGGTAGTT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
GGGTCTCTCCTGAGGG	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
CAGTCGGGGTAGGGCA	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
GGGCAGCTTCACATTT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
CAACGTGCCGCGCCGC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TCTCATCTGCGGCGCG	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
CCCATTGCAATGTAGT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TCTTACCTACAGTTGT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TGTGCTCAAGAATCTA	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TACTTGAGGCGCCCGT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TTATGTAGCCCTTTGC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
CCCTGCCTACCACATT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TAAACAGTTTCTGGTC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TTTTGCCTGTTACTTT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TTTGCCAACGAGCCCC	ref_3081_missing	0	0	0	1	2	0	1	0	2	0
CAGCATGCGAGGACAC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
CCAGTAATTCTACAAT	ref_3081_missing	1	2	1	1	6	0	3	0	3	0
TCCTGTCCGGTCTTAT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
AAATTGCTCGCCTATT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TATGCTTGCTCCGCTC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
GCATTGTCCTCGTTTT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
AAAAGGTATGGTGGGT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGCATGGTGGGC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
CCGAATGCCATATTCT	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
AACCCGAGGGACAATC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
GTCAATCGGTAGCCGC	ref_3081_missing	0	0	0	0	0	0	0	0	0	0
GGATTAAGTATTATCT	alt_5473_missing	34	15	19	16	18	21	16	23	25	17
CCAACTGTGCGTCCCG	ref_1454_fdr	10	14	12	7	7	4	8	14	5	13
TAGTGGTGGGTGTCAT	ref_1454_fdr	13	7	21	9	11	4	12	9	15	12
ACATTGCTCTACACGG	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
ACATGAGAACTTGCTG	ref_1454_fdr	52	34	77	52	26	47	48	32	42	57
CGGCGTACATGTGCCG	ref_1454_fdr	19	15	13	17	17	22	13	15	22	18
TTTCGCCGACCCTTCG	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
GATAGTATGATCGCTT	ref_1454_fdr	56	45	76	48	59	50	30	69	47	49
TTACTATGATAGGGCA	ref_1454_fdr	17	15	18	21	10	8	8	12	11	15
AACCGATTTCAAAGGG	ref_1454_fdr	30	15	17	26	21	13	14	24	17	20
TCTACGCGCCTGTTCC	ref_1454_fdr	34	20	40	36	27	25	32	38	16	35
TATCCTCGGCCTAGTA	ref_1454_fdr	20	21	20	22	33	18	19	14	16	13
TTCAACGTGTCGAGCG	ref_1454_fdr	24	24	42	26	28	36	31	37	26	30
AAGGGCAACTCACCTG	ref_1454_fdr	4	10	5	4	14	4	14	2	12	7
TGACCTTGACCATCTG	ref_1454_fdr	45	50	70	66	52	52	69	40	67	44
CAGTTTAATTTTTATT	ref_1454_fdr	7	3	3	2	2	6	4	3	3	8
ACATCGTGTTTTTAAC	ref_1454_fdr	10	14	14	12	6	17	7	10	8	11
ACCGGCACATCTTATG	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
GCAGAACGTGTGAGCA	ref_1454_fdr	15	20	18	19	13	19	17	16	23	18
CAAGGCCCTATCTGTA	ref_1454_fdr	265	130	275	264	164	213	175	240	188	207
GACGCCTCCACCCATC	ref_1454_fdr	33	20	27	24	35	21	33	16	34	29
ATGCCGTCGACAATTG	ref_1454_fdr	32	36	33	28	38	27	26	33	38	23
TGGCTCTAATTATGGG	ref_1454_fdr	129	113	152	136	82	124	93	128	121	131
TTTCGTACGGGCCACT	ref_1454_fdr	71	50	75	76	53	64	59	67	53	58
GCCTGAAGTTAACCAG	ref_1454_fdr	14	24	17	15	11	21	23	20	23	12
CTCTCAGTGCAGTTAG	ref_1454_fdr	17	14	17	15	18	13	9	16	9	10
GCCTGTCACTTTAGGA	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
TTACGATTCGCAACGC	ref_1454_fdr	125	74	158	152	89	121	114	138	112	128
TAGTCGGTACGCAACG	ref_1454_fdr	6	20	16	18	12	17	11	21	6	14
TTCCAGATGGTGTATA	ref_1454_fdr	124	73	135	104	71	82	73	92	88	110
GTCCGTACTCCTTACA	ref_1454_fdr	47	38	74	54	36	53	56	44	60	51
CTGGGATGATGACTAT	ref_1454_fdr	40	32	27	19	20	21	26	23	33	19
TCTACGCGCATGTTTC	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
TACTATTAGCCGTCCT	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
TGTTGGTCTTTTCCTA	ref_1454_fdr	23	13	36	24	21	32	15	20	19	33
TGAACATTACCGCAAA	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
AAGTGCATTATGGCTT	ref_1454_fdr	15	10	14	13	10	12	19	14	11	21
ACATCTCGGTCGAGCC	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
TTTATCTCCGATTGCG	ref_1454_fdr	0	4	3	3	0	2	3	0	0	2
AACTGTCAGAACTGTT	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
GAAGCCGCTGAAAAGT	ref_1454_fdr	13	17	18	17	8	13	16	16	16	16
GTACGTGATATGATGA	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
ACAGTTTCGTAAGTAA	ref_1454_fdr	65	58	77	71	55	73	75	85	63	64
TATTTCAGCTGGTGGA	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
ATGTCCTAATTCATTG	ref_1454_fdr	541	434	634	601	471	573	493	535	511	496
TGACGCTTATGACCGT	ref_1454_fdr	0	0	0	0	0	0	0	0	0	0
ACTACCGGTTCTAAAG	ref_1454_fdr	147	121	157	126	149	112	150	102	161	114
GATTACACTGATAAGT	ref_1454_fdr	29	19	32	35	26	25	35	25	24	27
ATGCATCGTAAACGTT	ref_1454_fdr	58	36	59	64	35	48	40	39	44	39
TGCGCAGCACTGGCGG	ref_1454_fdr	6	7	11	3	9	10	10	7	8	4
GACAGATCACTGTCGC	ref_1454_fdr	9	20	8	4	11	6	11	6	14	9
GGCCTAAGTATCAGGC	alt_4774_missing	17	26	24	28	20	28	21	28	21	22
CGGATAGAACGAACTG	alt_4774_missing	16	13	24	32	17	24	17	18	21	15
GGGTAGCACAACTACG	alt_4774_missing	4	1	3	3	2	1	0	2	1	1
TTTGGATTTCAGGAAA	alt_4774_missing	33	16	38	23	24	23	25	37	24	24
AGTTCCGGAGATCTCG	alt_4774_missing	0	0	0	0	0	0	0	0	0	0
TACAGCGTTACATTCA	alt_4774_missing	43	34	50	42	25	33	30	43	36	32
GTCACGTGGTTTGCGG	alt_4774_missing	68	57	72	81	50	56	46	72	49	55
CTATATGAGTAGACCC	ref_598_missing	3	7	8	6	7	7	6	2	11	2
TCCCACCGCTCTGCTT	ref_598_missing	2	4	2	1	5	3	7	4	10	2
TGGCTTGAACTCATAC	ref_598_missing	11	25	21	11	13	11	23	11	24	6
GTTGTCATAAGGACCT	ref_598_missing	8	3	16	11	12	3	9	6	12	9
CACTCGCATGTTCGGT	ref_598_missing	38	80	62	50	68	35	68	31	76	37
CGAAGAGGATCTGCAT	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TTTTGCATAACGTTTG	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TGTAAATAGAGACACA	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
GCAGTGCCCTTTTGTC	alt_5003_missing	5	12	7	12	16	7	15	8	14	6
ATATCGACTGTTATTG	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TTGTCGTTATTTTCTA	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
ACTTAGCTTACGGTCT	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
GTATAAATGGATTCAG	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TTGTAGGTTATAGGAT	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TCTTTGTATCTTCGTA	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
CAATCTACTTACGTCT	alt_5003_missing	3	13	0	0	3	2	4	0	7	2
TAGGTCCTTTCTTGTA	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
GGCCTGTCGCTTTGTA	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TCTGCTCCGTTAGGAC	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TGGAATATACTCCGAA	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
ATTCATCCACCGTGGC	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTCTATATCTTT	alt_5003_missing	6	23	9	11	10	8	9	4	15	2
CTATTGCCTACCCCCT	alt_5003_missing	0	0	0	0	0	0	0	0	0	0
GTTTTACAACTGACCT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GGACTTTACCTTCTGG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GTTAGGGTCGCTCCTT	ref_607_missing	4	4	4	2	0	11	8	3	11	5
GGCCGAACCCTTTTGT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GATGGCCAGCTGAACG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GTTGTTTTCACGGAGA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TTTTCATATAACCCTG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TGTGTCGGTAGCTGCG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TCTGGCATTCGAGCGA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
ACGCCATAATGGTAGT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CAAACTCGTCAACGCA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
ATTTAGTTCACTCTTT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
AAGACCCGGGATTACG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TCTATGGGTAGCATGG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CAGCCAGTAAGAATTC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
AACGAACTAGAGGTTA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GGCTCGACGTAGTTCT	ref_607_missing	0	1	0	0	0	2	0	0	0	0
CCCACGGGAATAGACC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GTAATTAGGAGACGGG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
AGTTAGAGCCTACCCC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CGCTGTTCCAAGACTG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CACGTATGCACCTAAA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
AAATTTTTTTTATTGG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CTTTCACATGTTCTAT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CTTTACATATCGTGCT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CCGACTGATAAATCCG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TAGGCGGGATAGTATC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TGTTTTCTACGGTTAC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TTGTTAGCAAGTGGAC	ref_607_missing	0	0	0	0	0	1	0	0	0	0
GACCCTGGACCTTCGG	ref_607_missing	0	0	1	0	0	0	0	0	0	0
ATTCTTCATCGAATTC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TAGCGCCCGGACTAAA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GGTACCTCATTGTCGG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GCCGGCCTCGGTAGGG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TAAACTTATATATGAA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
AAATTCGGACATGGCT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GAGGGACCTCCGGTTA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CCTATAACCGAACTTT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CCTGGGGCTCGGCCTC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GCCTACTCAGTGCTGG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CCTCGGGTTGTTACCC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TATCTCCGGTCCTGTT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CAGCTATGCTATTGTA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
AATTTTCGTTCGGTAG	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CCCTGCTACCCTACGA	ref_607_missing	0	0	0	0	0	0	0	0	0	0
GCAATCACTGAAATTT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CTTTATAAGGGGAAAT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TTTCAAAACTTTCTTT	ref_607_missing	0	0	0	0	0	0	0	0	0	0
CCTAACAATATTACTC	ref_607_missing	0	0	0	0	0	0	0	0	0	0
TTTTTCTACCTTCGGG	alt_5581_missing	102	103	146	123	101	121	79	117	77	108
TCGCTCGAGGTTTACT	alt_5581_missing	163	91	216	173	96	169	119	173	147	153
CATATGCCGAGCCTAT	ref_1839_missing	13	8	21	23	12	20	5	17	8	9
GTGTGAGGTTTCAACA	ref_1839_missing	158	50	136	154	62	141	67	120	48	132
AGAGTTTTGTTTGCTC	ref_1839_missing	276	112	297	291	93	238	100	251	106	232
TGGGATAGTCCTGCTG	ref_1839_missing	76	47	130	94	48	105	54	77	50	73
GGTCCTGAGTTTTTAG	ref_1839_missing	28	4	39	26	9	31	13	21	13	21
AATTTCTCTTGGGCAA	ref_1839_missing	96	39	123	114	38	83	29	69	39	76
TTGTTTTCCAGACATC	ref_1839_missing	85	26	82	94	33	70	35	83	33	55
TTCAGCTGCAACCAAC	ref_1839_missing	0	0	0	0	0	0	0	0	0	0
GTGAAACTGGGCAGGC	ref_1839_missing	5	2	15	7	4	10	3	10	3	9
ATTATTTGGCCTGCTC	ref_1839_missing	43	12	46	55	20	46	19	47	17	47
GCTAGCCTATTACCCA	ref_1839_missing	0	0	0	0	0	0	0	0	0	0
GACTTCTTCTGATTTG	ref_1839_missing	113	46	172	119	51	130	42	109	46	97
CTGAAGGTATAGAACT	ref_1839_missing	221	86	289	237	80	207	102	240	114	193
TGTAGTGTTAGGAGAC	ref_1839_missing	0	0	0	0	0	0	0	0	0	0
TTTACCCTTCCTGGCT	ref_1839_missing	10	3	19	11	6	7	1	12	4	14
CAGAACCTTGTTGTTT	alt_5701_new	3	16	3	5	29	7	35	3	17	2
TCTTGGATTAACATCG	alt_5701_new	68	66	69	75	61	67	59	65	65	58
GGGACCATGCGCAAGG	alt_5701_new	90	88	133	78	100	97	78	89	92	83
GTCTGCTGTTTATCGA	alt_5701_new	201	177	247	182	196	158	186	177	207	175
CGAAGGCTTTACTTGT	alt_5701_new	18	20	35	28	16	13	25	22	22	26
ATTGTCCGGCTTATTA	alt_5701_new	36	31	33	32	26	28	40	29	23	25
GAATAGCACTTTTCAG	alt_5701_new	0	0	0	0	0	0	0	0	0	0
GGCGAAATTTTCCGTA	alt_5701_new	0	0	0	0	0	0	0	0	0	0
TAGCCTCGCACCGTTT	alt_5701_new	0	0	0	0	0	0	0	0	0	0
TCAAGCCTCTTTCAAC	alt_5701_new	106	102	122	87	126	93	116	102	112	93
CCTGCAGTCTTATCGA	alt_5701_new	71	68	88	61	47	72	74	57	54	57
TCTGGTAGAGGAGTAA	alt_5701_new	437	373	483	368	404	385	421	336	427	368
GTAAGCAGTAGTCTGG	alt_5701_new	35	33	37	32	25	25	29	21	37	28
GACAACTAAAAGAGGT	alt_5701_new	54	53	60	62	64	44	56	36	40	41
TGTTTCCGATTTCGCA	alt_5701_new	16	7	15	14	10	7	14	5	12	11
GTTGTCTTATTCGTCA	alt_5701_new	61	62	77	41	58	44	76	66	42	65
TGTGTTGCCGTGTCCA	alt_5701_new	15	19	21	14	21	38	19	22	18	19
CTTCATTATGTCGCCC	alt_5701_new	61	38	57	49	58	52	45	39	50	47
GTCAACTGGATTATAA	alt_5701_new	19	26	20	23	30	21	28	16	26	18
GAAATTTTTCTTATGA	alt_5701_new	0	0	0	0	0	0	0	0	0	0
TCATCAATCACCGCGT	alt_5701_new	9	9	11	21	11	5	16	14	20	15
TACGGTAGTGATAGTC	alt_5701_new	33	33	48	34	29	40	45	28	35	42
TATCTGTGCTCTATTT	ref_5732_new	26	25	28	33	27	21	29	22	26	10
CGCGCCAACCGAGGTG	ref_2830_missing	0	0	0	0	0	0	0	0	0	0
AGAATTTTCGACAAAA	ref_2830_missing	0	0	0	0	0	0	0	0	0	0
TGGTCGGCTCTGTGTC	ref_2830_missing	0	0	0	0	0	0	0	0	0	0
TGTGTATTTCTACTTG	alt_3213_missing	31	29	38	35	29	24	38	26	30	23
GGGGTGAATAACTTCG	alt_3213_missing	40	20	31	26	19	30	24	30	23	28
TTTCTGAGTTTCCGAC	alt_3213_missing	3	6	5	5	5	8	9	9	4	3
ATGTCCATTGTTATAC	alt_3213_missing	0	0	0	0	0	0	0	0	0	0
TCCGCGATCCAGGAAT	alt_3213_missing	0	0	1	0	4	2	4	1	0	2
CGGTATGGTTCGTCAC	alt_3213_missing	2	5	5	6	11	4	9	3	7	6
GCAGGAAAATGAGTAT	alt_3213_missing	26	15	34	16	41	18	25	15	25	24
TAGAATTTTAGCTCAG	alt_3213_missing	18	15	12	12	6	8	16	14	6	7
ACTCGAACTTGTGCTT	alt_3213_missing	127	120	132	116	88	114	113	105	96	107
CCTAGGGTTAGCTTTT	alt_3213_missing	23	29	30	25	21	20	17	13	21	11
CGTGTAAGTGTGGGAC	alt_3213_missing	79	83	97	80	90	88	87	77	120	70
CAGAGGACTCCCTAGG	alt_3213_missing	8	3	10	3	10	1	7	6	5	3
AAACCCGTTCGCTTGC	alt_3213_missing	23	26	22	25	17	14	22	14	22	21
TTAGGTAAACTGTCGC	alt_5866_new	173	86	187	171	65	142	74	179	70	155
TCATGTTACTGCCGGG	alt_5866_new	83	48	119	97	35	109	45	91	49	80
TCTTAATGTAGTTTTA	alt_5866_new	20	8	14	28	7	19	11	16	4	22
TGTCTCGGCCGCCACG	alt_5866_new	22	5	18	22	8	15	11	19	3	13
TGCAGCTCATGATACT	alt_5866_new	165	89	202	193	89	154	98	182	116	176
CGTCCGTGAAAGTCCT	alt_5866_new	89	23	109	85	24	69	32	82	42	66
GTACCTTTATATAACG	alt_5866_new	0	0	0	0	0	0	0	0	0	0
CCTAAATCGAGATTCA	alt_5866_new	8	5	6	8	10	5	6	2	3	8
CTTTTCGGTCACAGAC	alt_5866_new	46	22	60	68	29	57	21	46	28	41
AAATTTCCGTTCGTTT	alt_5866_new	445	184	551	473	164	401	195	369	240	381
TGAAACGGACCTGAAT	alt_5866_new	0	0	0	0	0	0	0	0	0	0
AGCATTAGCGTGGGAC	alt_5866_new	0	0	0	0	0	0	0	0	0	0
TAGACATCTGACTGTC	alt_5866_new	75	48	104	104	46	85	46	89	36	80
CTTTCACCTGACCGGC	alt_5866_new	36	17	56	35	29	42	14	33	11	37
ACTAAAGTTTAGCCGC	alt_5866_new	60	17	85	56	21	49	26	78	28	70
CGTCCATAAATGGTTC	alt_5866_new	10	3	4	4	1	5	2	2	3	8
CTTTTCTGCTCATGTT	alt_5866_new	0	0	0	0	0	0	0	0	0	0
TGACATTGGCTGCAAT	alt_5866_new	176	88	231	194	97	207	82	214	86	161
CGCTGTTTCGGGGCCG	alt_5866_new	366	169	504	388	171	346	206	397	180	330
CGGTGGATCGAGGCAA	alt_5866_new	0	0	0	0	0	0	0	0	0	0
TACTGTTTTTACGATG	alt_5866_new	51	17	42	46	26	39	8	37	14	40
GATTCGTGTTTGACGC	alt_5866_new	70	33	90	96	40	91	45	77	25	75
ACGTACATTCGCTGGC	alt_5866_new	25	15	26	15	20	26	16	32	19	14
TCGAATACCCGCGGAT	alt_6082_new	20	41	20	16	33	16	24	17	16	12
ATGCAGCTTCAAGATA	alt_6082_new	10	17	6	11	8	6	19	8	21	12
CCATCCGTCGATCTTG	alt_6082_new	14	99	16	14	134	13	125	17	136	16
GCGTCCGCAAGCATGG	alt_6082_new	254	410	309	270	425	281	437	251	440	242
CCCTTTCTTGCAATTG	alt_6082_new	0	0	0	0	0	0	0	0	0	0
TGTAACAGTGGCATTT	alt_6082_new	43	77	49	35	46	37	66	35	65	31
CAGTGCAGCCAAATGA	alt_6082_new	143	259	145	116	220	96	262	92	236	103
ACTTATACTCTTGTTG	alt_6082_new	35	63	39	39	57	21	56	30	49	24
CCCCCTGAGGGTCCAG	alt_6082_new	19	33	26	11	34	26	44	14	50	15
AATTGTTGGGTTGACC	alt_6082_new	58	130	68	60	107	69	126	50	137	66
ACAAACTAGCTATCAG	alt_6082_new	9	23	19	15	20	14	31	12	29	18
ACTTGACGTATCTAGC	alt_6082_new	0	0	0	0	0	0	0	0	0	0
TATAAACTTACTCGCA	alt_6082_new	14	20	11	11	21	22	18	12	23	6
CCTGCTGCAAGAAGCC	alt_6082_new	6	20	5	7	23	6	9	5	14	11
ACGGTAATTCAAAGTC	alt_6082_new	50	79	64	43	71	54	76	44	121	39
CTCTTTCTATGATCGC	alt_6082_new	44	102	58	50	95	44	106	39	97	27
GCTTAGACCGTGTTTG	alt_6082_new	48	118	65	64	127	35	114	54	132	46
AGACTCTTAGGATGGA	alt_6082_new	48	75	47	36	57	37	65	34	78	40
GTGAGGGATGCTGGGT	alt_6082_new	5	46	31	24	33	22	33	22	41	14
ACTTCCCATTGGGTGG	alt_6082_new	60	340	68	48	345	68	338	45	332	58
GTTGGTTACCGTATCT	alt_6082_new	28	37	35	22	52	25	40	37	53	20
TAACTTGGTTCATTGG	alt_6082_new	41	79	62	57	106	38	87	41	69	52
CCTGATCCTGAAACAG	alt_6082_new	16	50	15	19	45	32	44	19	47	20
ACTTAAGTCCGATCCG	alt_6082_new	29	41	33	24	52	34	59	38	66	27
ATTCGATGACTTCTCC	alt_6082_new	16	38	18	16	32	15	28	20	27	15
TTAGCTTATGGCATGT	ref_6082_new	13	9	9	4	4	4	11	4	11	5
TGTATGTTAGTATCAT	alt_6082_new	26	64	21	28	49	16	60	30	55	24
AGTCTCATAACTCTCT	alt_6082_new	61	98	78	47	106	49	88	41	120	46
TTCATATCTGGTCTCC	alt_6082_new	64	86	72	65	92	42	113	50	100	44
AGAGGATTCCGTTATC	alt_6082_new	21	41	26	19	28	24	39	15	50	16
TGTGCTCGCGTATCCC	alt_6082_new	12	52	7	3	44	6	61	4	44	10
TGCCGGCTTACGTGTA	alt_6082_new	55	71	37	34	68	42	90	40	57	31
TAGCTTCCTCCGTTTT	alt_6082_new	9	23	13	11	30	10	18	8	11	9
GTCTAATGAATCAAGG	alt_6082_new	15	38	14	17	22	24	29	10	43	13
CATTGCCGTTGTTTGT	alt_6082_new	4	15	5	6	18	9	18	10	11	4
CACATTGGGGAAGAAC	alt_6082_new	6	2	2	6	14	3	15	2	11	4
CTGCCAGGGCCCTCGA	alt_6082_new	26	53	43	27	51	29	66	27	63	18
CCCTATTCTTGGGTTA	alt_6082_new	43	63	66	54	81	35	83	32	87	33
TTCGTGCTTTTTTTTA	alt_6082_new	8	5	17	6	14	11	13	9	15	11
ATACAACACAAGTAAC	alt_6082_new	23	38	40	31	44	28	37	27	53	26
GGCTACACCTGAGCGA	alt_6082_new	23	22	25	37	31	26	30	19	49	22
GTACTAACAGCTAACA	alt_6082_new	8	10	8	6	12	5	12	5	13	5
CTATCTTAGAGTTGAA	alt_6082_new	17	19	14	8	22	6	17	14	18	6
GGCACAGTCGCCCTAA	alt_6082_new	13	20	11	14	23	19	23	10	33	17
AGCCTCGCACCCACCA	alt_6082_new	15	48	14	23	54	19	51	26	65	20
GTCCATCAGCTTCACA	alt_6082_new	29	72	51	43	81	28	66	36	83	42
TATCTCGTGTGGACAT	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
CTCCGGGAAACGCGGA	ref_4899_missing	3	6	0	3	4	2	0	2	2	1
TTACGACCTAGGCCCC	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TGGGACACAGGTGGCC	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TCAATGTTCGCCGATC	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
CTAAGCTCTGAACCGT	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
CTCGGTCTCACGGTGG	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TACCTAGCATTTATAG	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TAGTGAACCGGCTAGC	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TTTAAGGCCGACTCCT	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TATAGGTAGGTCTTTG	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
GCTAAAATAGCATAAA	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TAGCGCATTTTATTAC	ref_4899_missing	1	9	6	4	10	2	4	3	9	5
TGTTTCGATCGTCTGG	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
TCTACCAAATCAGCCT	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
GTAAATTTTATTGGAA	ref_4899_missing	0	0	0	0	0	0	0	0	0	0
GTGATGCTTCCGACTG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GGTCTGCCAGGTGGTT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GCTTGGTAAGGGTAAA	ref_4732_missing	0	13	5	3	14	3	12	3	12	6
AGCGCCTGATGCCTCT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GGCTTAAGACCTTGTT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
TCACACTCTTTCGGCC	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GCCCGTATCTCACTCG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
ATCGTCCCGTCCTTGT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GCTAGTATCAAATACA	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
CCGGCAGCATAATATT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
ACAGTAGTTTACCACC	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GGATTATCAGAGGTTG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
AGTTTGGAAACGGACT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
CGGAAGGGCTCATCCG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
AGTAAGCCTGGTAGCA	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
TAAGCTGTTTTCTCGA	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
TATTATTTTCAGCCAT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
ATTCCGTGCCATCTCG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
CCGTTCTTTTGGCGAT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
TCACCGCCGGCCTCCG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTACTCTGGCAC	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
ACGTACGCAGGCGTTG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
GACTCAGTTTCTGAAT	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
CGAGAACTCAATTTGC	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
ATTATTGTATAGCCTA	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
TCTGAATTTTGCTTGG	ref_4732_missing	0	0	0	0	0	0	0	0	0	0
CAGGCTCACAGATGTC	alt_548_reverse	73	87	79	100	75	64	79	70	86	72
GTAGAAATACCCTCTG	alt_548_reverse	157	141	214	155	130	137	143	149	128	164
CTACGCCTTAGACTAA	alt_548_reverse	70	48	65	65	67	71	55	64	51	49
CGCCGGGATGATTCCG	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
GCGGCGCGTTGTTTGC	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
GTAACTCGACGCTGAG	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
CGAAAGGGCATGGGCA	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
TTTAGCTCATAGTGCA	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTGCGGTTCTTA	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
AAATCGAGCCAGTTCT	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
TCCCATTCGAGCTCAC	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
TAATGCTAAAGAGGAA	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
ATACAGCTGCCTTTAG	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
CTCGGAGTTCAGGTTT	alt_3081_missing	0	0	0	0	0	1	0	0	0	0
CGGTTGCATGTTACAC	alt_3081_missing	1	1	0	0	1	0	2	0	0	0
ACTCTTTTCGGGCAAC	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
ATAAAATTTGGCTCAG	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
CGCATCGGTCAGCGCT	alt_3081_missing	0	0	0	0	0	0	0	0	1	0
TGCTCCGACGGCTCAA	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
ATTCTTTTGTGGCTTT	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
GTTACATCGCCGGATC	alt_3081_missing	1	1	2	1	1	1	2	0	7	0
TGGGTTGGTGTCCGCG	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
CATGGACTTGTGCCAC	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
ACATTCTCCACTACGT	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
ATTAATGTAACCTCTG	alt_3081_missing	0	0	0	0	0	0	0	0	0	0
GCTTTCGCTAGGCTCC	alt_2410_missing	4	12	10	6	12	5	12	4	12	8
ACGTCCGTAAGTTGAG	alt_2410_missing	10	8	6	3	4	4	5	8	9	5
TGGTTTGCATCACTAT	alt_2410_missing	14	31	17	14	19	21	21	15	30	14
GCTGCCTTCTGACAGG	alt_2410_missing	39	68	41	48	58	46	67	41	76	30
TCAAAACATAGACAGT	alt_2410_missing	12	24	7	5	16	15	11	5	17	8
AGAGATTCAAAGTCCT	alt_2410_missing	77	97	51	57	93	62	95	50	116	53
TCATATTGGCATGTAT	ref_5897_new	0	0	0	0	0	0	0	0	0	0
GATAGATGGCTCCCTG	ref_5897_new	147	146	150	125	140	133	153	97	171	103
TAATCCACCCGTAGTT	ref_5897_new	0	0	0	0	0	0	0	0	0	0
TCGCTGCACCTATGGC	ref_5897_new	47	53	47	49	52	38	56	47	61	42
ACACTGGAGTTATTCT	ref_5897_new	7	5	10	14	14	5	11	7	9	10
GATATTCAACAATGAC	ref_5897_new	19	29	24	32	39	22	37	20	26	24
GATCCTAACACTTCCT	ref_5897_new	52	55	51	58	63	51	52	42	50	41
TATGTCAGTTAGTACG	ref_5897_new	0	0	0	0	0	0	0	0	0	0
CAGGAGAGTGCTATAT	ref_5897_new	13	9	10	7	13	6	15	10	13	8
ATTGCCCTAGTGGCAT	ref_5897_new	4	5	5	7	6	5	5	6	7	3
CTTGGTTGATTGCCGC	ref_5897_new	0	0	0	0	0	0	0	0	0	0
CACTTACAGGCACTTG	ref_5897_new	0	0	0	0	0	0	0	0	0	0
GACGTACATTTGATTC	ref_5897_new	0	0	0	0	0	0	0	0	0	0
GGATGGCGGGTTATAC	ref_5897_new	30	18	30	28	29	27	30	22	38	20
TTCTCTACTACGCGCA	ref_5897_new	0	0	0	0	0	0	0	0	0	0
GGCTCCAAGCAGGGTC	ref_5572_upstream	15	23	22	20	34	13	16	19	15	18
AGTCTATGAGTGGTCC	ref_5572_upstream	23	36	35	27	38	15	23	14	28	15
TTGGGCATGATCTTCA	ref_5572_upstream	7	11	9	7	10	7	13	7	4	11
TCTCGTTATAAATTGC	ref_5572_upstream	30	42	33	33	46	37	52	34	38	30
GAAACAATCTCTTTCG	ref_5572_upstream	22	31	16	19	37	19	34	25	39	21
TGGCCGTGAGACGCTC	ref_5572_upstream	4	14	12	13	23	9	10	10	17	4
ACGCGCCGTCCTGATT	ref_5572_upstream	65	70	74	68	87	64	99	52	107	62
GGGTATCAAGTCGTAC	ref_5572_upstream	65	83	86	51	79	54	91	55	92	44
AACGCCTGACGAACGT	ref_5572_upstream	67	134	85	80	154	63	174	75	190	55
TCAGTTTCCTTTATAT	ref_5572_upstream	39	53	50	35	47	45	50	35	58	39
TCGTTCGTCGAATTTT	ref_5572_upstream	0	0	0	1	0	0	0	0	0	0
TCGGGTTTTCGGAGGA	ref_5572_upstream	21	20	21	20	30	21	22	9	22	23
TTTTCGGCCCGTCAAG	ref_5572_upstream	153	244	208	162	200	178	184	157	235	144
TCGAACGTACTCGATC	ref_5572_upstream	65	98	83	50	106	49	115	56	103	39
TTGGCAGATGGGCGCG	ref_5572_upstream	11	10	10	16	9	14	18	15	14	14
GTGGAAAGGTTTCCGG	ref_5572_upstream	21	17	26	22	30	15	35	16	20	19
CTGAGATTGCTGCCCC	ref_5572_upstream	12	7	11	5	13	13	14	8	20	11
GAATTACTCTGTAAAT	ref_5572_upstream	14	11	10	12	15	10	9	7	13	8
GCTTTGGTATGCCGAA	ref_5572_upstream	129	140	141	123	157	128	145	89	162	109
GTTGCAATCTTGCCTT	ref_5572_upstream	4	9	4	4	5	4	6	3	8	0
CCGTCTGTCGTTGGGT	ref_5572_upstream	0	0	0	0	0	0	0	0	0	0
CGGCTAAGGGCGTCTC	ref_5572_upstream	58	67	59	57	57	52	76	49	62	64
TATGCAGTTTTCTACG	ref_5572_upstream	0	0	0	0	0	0	0	0	0	0
GATGAAGGTCATGCGT	ref_5572_upstream	11	8	13	6	8	5	11	5	6	4
TATGTTATTGATCTCA	ref_5572_upstream	85	79	89	91	65	62	94	69	100	61
TTATAAGCTACCGTCT	ref_5572_upstream	36	51	35	27	50	38	67	27	75	12
TACCTCGTTTTCCGTT	ref_5572_upstream	7	18	12	11	12	13	20	5	21	7
TTTTCTACAATCCTAG	ref_5572_upstream	115	184	158	143	184	100	181	120	183	116
TTAAGATGAACGCTTT	ref_5572_upstream	0	0	0	0	0	0	0	0	0	0
TTTGTGATGTTTTTCC	ref_5572_upstream	0	0	0	0	0	0	0	0	0	0
GGCACGAAGTCCTTCT	ref_5572_upstream	78	100	85	83	80	61	119	81	81	74
GACAGGGATTAAGGGG	ref_5572_upstream	39	46	41	33	52	45	62	42	63	31
CATTACATGTCTCGGT	ref_5572_upstream	27	22	20	31	29	21	21	25	22	14
TTGAACGCTGGCTCAA	ref_5572_upstream	55	70	76	52	66	66	63	68	85	52
TTTCCTTCTCTATGTT	ref_5572_upstream	0	0	0	0	0	0	0	0	0	0
CCTTGCTCTAGTGAGG	ref_5572_upstream	19	23	16	17	29	11	26	13	39	8
CCCCGGTTTGGGTGGG	ref_5572_upstream	7	16	8	9	13	5	9	6	21	6
GGAGAATCAAGCTATC	ref_5572_upstream	0	0	0	0	0	0	0	0	0	0
AGTTTCGGCTTACGGC	ref_5572_upstream	6	2	3	6	4	4	4	2	2	3
GTGGGATTAGCAGTTC	ref_5572_upstream	195	235	228	161	261	175	267	169	295	157
TACTTCGACTCTAAAG	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
ACGCGATTTCGCTTAT	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
GCATCGTAAAGATCGA	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
GATGCTCCCCTTTCTC	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
CATCGTATCCTGCCCC	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
TCTGTTTGTTATAGGG	ref_2559_missing	6	4	4	5	13	8	15	5	11	5
CTAACTCTTGATGGTA	ref_2559_missing	23	49	41	31	46	37	40	36	37	25
TCAGATACATGTCCCT	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
GGTCTGTTTACTACAG	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
GTACTGATTTAGCAGT	ref_2559_missing	15	8	8	11	11	7	25	13	19	13
AATCTTTTGACTGGTC	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
TGTAACTCGGCCAGGC	ref_2559_missing	10	8	6	8	5	6	8	9	10	8
GTAGGTTAAGGGTTAA	ref_2559_missing	4	8	11	8	9	6	13	2	7	8
TCACCACCCGCGCTAA	ref_2559_missing	20	19	24	13	22	13	33	12	26	15
TAGCTCTCACCTAGTA	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
TCTGTTTAAGGTTGCC	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
CGTTACGTCGGACCAC	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
CTATCTTAAAGCTAAT	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
GCTACAATCTTATCCT	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
ATTGGAATCTTTGCTC	ref_2559_missing	4	4	2	1	4	1	3	5	2	6
CCCTGTCTAGAGCAAA	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
CCTCGTCGGTAACGTG	ref_2559_missing	11	23	19	10	35	13	10	14	18	22
CGCTATGCCTGCCATA	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
GAGAACTAATCACGGC	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
GAAGGGCGTATTGTTA	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
TCAAGGTATTCATTAA	ref_2559_missing	19	27	36	28	36	24	53	25	27	26
TAGAGTCGACGCCCAC	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
ATGGGATGCGCTTACT	ref_2559_missing	0	0	0	0	0	0	0	0	0	0
CCTGTGCTCCTTCGTG	alt_5557_missing	0	0	0	0	0	0	0	0	0	0
CCACATTGTAGCTTTT	alt_5557_missing	17	15	15	10	9	5	19	11	15	17
GAATTGATCGGCGCAA	alt_5557_missing	3	11	4	8	9	3	11	4	9	2
ATGGTTAGTCTACAAT	alt_5557_missing	3	4	6	4	11	2	5	4	11	2
GGATGTATTCTCCAGC	alt_5557_missing	16	20	14	13	10	5	13	9	21	8
AGGTGGTATCTTAGCG	alt_5557_missing	0	0	0	0	0	0	1	0	0	0
TTGCCGCTGATTACGC	alt_5557_missing	7	17	14	10	22	8	22	11	33	12
ACTTACATGATCCGCT	alt_3990_missing	0	0	0	0	0	0	0	0	0	0
GCTACGAGTTGCACGT	alt_3990_missing	346	48	377	349	68	265	53	336	77	268
TAGACTATGCTGCTTT	ref_5171_missing	0	0	0	0	0	0	0	0	0	0
CGCATGTTTCGAGTGT	ref_5171_missing	16	23	28	27	41	26	44	14	32	28
TCAACATTTTCAGGTA	ref_5171_missing	95	142	111	84	148	116	158	87	166	94
TGGAGGAATCTAATCT	ref_5171_missing	36	75	68	49	93	53	76	47	76	42
GTATCTGATATATAGG	ref_87_missing	14	18	31	28	21	20	17	19	6	17
CGCTAGGAGTCGGTAG	ref_87_missing	0	0	0	0	0	0	0	0	0	0
CACCCCGGTGTGTCTT	ref_87_missing	0	0	0	0	0	0	0	0	0	0
TGCGTAGTCCATCCAG	ref_87_missing	0	0	0	0	0	0	0	0	0	0
CGATTGTGTTCCTAGT	ref_87_missing	63	25	41	38	42	38	37	44	29	27
TTGAGCGTTGGCGTCA	alt_418_missing	0	0	0	0	0	0	0	0	0	0
AGACAAAGTCCTGGTG	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GTTCAACCTACAATAT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GGCCCTGGGGTATACT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TTGGCCGAAGCTACAT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GCTGTCAAAGCTTTCA	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GATTTTTCTTATTGTG	alt_418_missing	4	4	0	5	8	0	8	5	7	3
TCTTATTTCGCGTTGG	alt_418_missing	0	0	0	0	0	0	0	0	0	0
CTGTGCTCAGATAACA	alt_418_missing	4	2	2	1	5	1	1	2	8	0
CTGGGCTTTTCGCGCT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TGGGGACTCCCTACCT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
AAGTAATATTGAGTAA	alt_418_missing	0	0	0	0	0	0	0	0	0	0
CAGGCCTCCGTCCCTA	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TATTATATCAAGGCAG	alt_418_missing	4	5	2	1	1	2	4	0	2	1
CGTTATCGGAATTTAG	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TCTGCCTTCGTCCTAC	alt_418_missing	0	0	0	0	0	0	0	0	0	0
ACCAACATAGCCTCGT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GGGACATCTTTATTTG	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TCGCTGCGACTAACTA	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TAGAAACCGTTCCCGT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TGCATACATTTAGCCC	alt_418_missing	1	5	1	0	5	4	5	2	1	0
GCTAACGCTTTAGGTT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GTCAATGTTTTGTCCC	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TATCACTTGCTTGGCG	alt_418_missing	0	0	0	0	0	0	0	0	0	0
CTATAAAGACTATTTT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TGACTTGCTTCGTTTT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
CTCTCCTCGCTTCGTT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
CCAGACTGTGTATTCT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GCGCTACAATTCGCCG	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TATATACTGGATTGAA	alt_418_missing	0	0	0	0	0	0	0	0	0	0
AAGCCACCATCTCTGT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
TCGTGTTGAACGATTG	alt_418_missing	0	0	0	0	0	0	0	0	0	0
CAGTGCACTACAGCAA	alt_418_missing	0	0	0	0	0	0	0	0	0	0
ATAAAAATTTGGACCT	alt_418_missing	0	0	0	0	0	0	0	0	0	0
GTGTCTCCATCCTCGG	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
AGAGGCCAACGTGTGT	ref_5003_missing	8	19	19	9	17	18	15	16	18	7
TCAGGCTCTATGTCTC	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
AAATCACTTTACAGCA	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
CCCTGAGGTATGTATA	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
CTAAGTCTCTTGTTAG	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
GTCATCCGCAATGCTC	ref_5003_missing	6	10	13	6	9	3	7	5	8	6
TAGCAAAGCTAACGGC	ref_5003_missing	16	19	32	22	33	12	28	15	18	15
CTAGTCTATAGCAAGA	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
AGGATGGTGTGTGTGG	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
CGGATGCAATAATAAG	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
CTTCTCTGTTGGTTAT	ref_5003_missing	6	11	6	8	12	4	4	8	16	4
TGTGTGCTATCAGTAA	ref_5003_missing	61	64	55	57	71	48	96	44	77	30
GATGCGTTAGTACTTT	ref_5003_missing	10	10	7	12	7	7	11	11	11	4
CGCATGTGTCTCTGGG	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
GCCTTGCTGCACAAGT	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
ACTGTGGAATTCCAGT	ref_5003_missing	11	11	10	13	17	16	6	12	25	7
TCGTAAGGGCGTTACG	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
CGGTATTTCGTGGTTA	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
GTGTCTGGCTCGCTTC	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
ATATGAGAGGGAGCGC	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
GCATTTGTAACTATGG	ref_5003_missing	0	0	0	0	0	0	0	0	0	0
CGACACCGTCCGGTTC	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
ATACGTTATTGAAGAT	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
CTTGGTTCTGCTCTCG	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
TGTTTGCAAAATACAG	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
CGGTGTACTTTGGGCG	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
TAACACCGGAGGTAAT	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
GTGCGAAAATGACTAG	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
GGATTAACAATTCAAC	ref_1739_missing	0	0	0	0	0	0	0	0	0	0
ATGCCAAATGATTAGT	alt_5681_new	17	18	23	13	16	9	18	4	22	4
GGTGGCACTGCTGGAT	alt_5681_new	25	44	29	25	40	20	43	26	42	28
ACCCAAGCCATTCGCT	alt_5681_new	11	21	5	10	32	10	29	6	19	7
TGCGTCGGCCCTGTTC	alt_5681_new	0	0	0	0	0	0	0	0	0	0
TTGCGTGGAAGACCCT	alt_5681_new	35	50	50	35	55	28	63	17	59	27
TGGCGTATAATCAAGG	alt_5681_new	59	112	70	65	77	50	92	59	111	51
ATGTTCGTCTTGGCTC	alt_5681_new	44	70	74	42	92	60	70	51	84	41
AGGAACTGTCTGGTGG	alt_5681_new	3	4	2	4	8	1	1	2	8	6
GAGAGTTATTTGGGTG	alt_5681_new	12	65	33	39	60	44	45	27	53	18
TGTTCAAGATGGGACG	alt_5681_new	0	0	0	0	0	0	0	0	0	0
GTAAAACAATTGTTGA	alt_5681_new	23	39	27	17	26	20	33	19	22	15
ATTCATGTCAAGACCC	alt_5681_new	0	0	0	0	0	0	0	0	0	0
TATGTACTTTGAATTT	alt_5681_new	59	121	68	52	84	54	81	69	89	54
TCCGACTCTTTATACT	alt_5681_new	17	38	15	15	31	10	20	14	38	11
TCCGATTTCGCCAAGC	alt_5681_new	20	74	36	35	60	53	61	25	64	38
CGTGGCCTAGGGATAC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GATTGGTTTTTTTAGC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GCCTTGCGTTAGCTGT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AATCCGTGGAATCTGG	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CTGGACTTGAATGCCA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GTTTAGCAAGATGCTG	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CGATCGGTTTCGGGGT	alt_4561_missing	21	21	10	24	18	15	17	10	21	11
GTTTCTTGCTGAAAAT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AGCTGGTTAACCCACT	alt_4561_missing	8	8	12	4	6	4	15	6	11	5
ATAGTTACCCTCTGTG	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CATGTACTGACTCTGC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CACCTGCTGCCATCTC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CGTGGTAATCTTAGAC	alt_4561_missing	8	15	8	6	12	2	13	5	9	6
CGAATCCGGATGCCGA	alt_4561_missing	15	23	31	14	28	10	20	15	20	11
TACTTTAGCGGTATTA	alt_4561_missing	1	2	1	0	4	1	0	5	3	3
AATACGGGTGCCAGAC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GATACGCGGGTATATT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TAGCTGATACGCACTT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GCTTTGCAAACTTCTA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TTTGAAAGGCGGTAGT	alt_4561_missing	26	49	41	25	36	24	51	28	66	22
TCGCCATTGATGATCG	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TTTTTTACCCAATGCA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
ATTTTTAGGTTAAATT	alt_4561_missing	14	16	12	21	19	14	17	12	19	13
TTTGCCTGTTCGGTCA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
ATTGCATCCGGATTTC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AGGTCTTATGCCTACC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TCCCGCAGCGCAATGC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TCCCGTGCTCCGCCCC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AGAGTCCTTTACCTCG	alt_4561_missing	6	17	7	8	10	7	16	3	16	4
TTCTGTATTTGTGTCT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
ACACGGACCGATATCC	alt_4561_missing	7	12	7	9	9	3	10	4	15	6
TAGGAAATTTTTGAGC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TATTGGCCCTTGGTTT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TCGTCATGAGGCGTTT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GTTAGCCCTGACATAG	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AGTCTTTAACATGCTA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GCGTCAGACTTCAAGG	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AATAATTTCAGGGTCC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GCTTCATTCGGCTCCG	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CTTTATCCCAGCTCCT	alt_4561_missing	0	0	0	0	2	0	2	0	0	0
GTTAGTTTAGTGTCAA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GCGGTCGTGGTCTCAG	alt_4561_missing	3	10	2	2	7	4	11	1	10	2
TAAAAATGTAGCCTAC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GGGGCACCCGTGTCAG	alt_4561_missing	22	30	14	12	15	21	20	13	30	20
TACCTCATTTGTCCAT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GACCGATCGCTGTTCT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CCGGTTCATTGACCGA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AATCCTATGACCTCGA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
AGTATTAAGCTTGACC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CCGATAGGCTGCGTAC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CATTACATTATGTACC	alt_4561_missing	2	5	5	4	8	2	3	6	1	3
AATAAGGGTGTACTTC	alt_4561_missing	7	19	14	7	13	16	10	9	13	16
CTGTACCTAGTACAGC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TTGCGGTTTTGCGTCC	alt_4561_missing	10	16	15	10	14	11	28	8	14	7
CGTTCCGGTCCCGCAA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
ATTGTTTCGATCGGGT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CCCGACTGTTCGCGTT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CAAAATCCGTATTTAC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CCTGGTTGGGTTTCGA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TGATTTTGATCTTTCT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CCACGCTAAAGCTCCT	alt_4561_missing	6	6	3	1	5	4	14	3	4	4
CATCCTGTTGCGCAGA	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
TGCAACACCTGACAAC	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
CCAGATTTGGCCAAAT	alt_4561_missing	0	0	0	0	0	0	0	0	0	0
GGAACACGAGTGTTTT	ref_548_fdr	221	51	241	208	54	178	59	208	64	184
CTTTTTTATCTGCTAC	ref_548_fdr	92	29	104	103	40	88	39	98	48	107
TAACCGAGTCATTTTC	ref_548_fdr	77	23	114	68	23	92	17	101	25	67
GGTTTTTGGCAGCTAA	ref_548_fdr	10	0	5	7	0	7	1	4	0	7
TATTATTAGGTTCTCT	ref_548_fdr	0	0	0	0	0	0	0	0	0	0
GTGCATTGCTCTAGAA	ref_548_fdr	0	0	0	0	0	0	0	0	0	0
TTCCGCCCCTAAGTGG	alt_5986_new	30	38	37	33	40	36	52	29	52	20
TCCCTTGGCTTCCTGG	alt_5986_new	3	10	2	2	8	5	9	4	12	2
CTCGGAAGTAACTACT	alt_5986_new	22	40	29	21	46	16	36	26	33	26
CCTTATGGTTTGTGAT	alt_5986_new	0	0	0	0	0	0	0	0	0	0
CTGGTAAACTCGCTAC	alt_5986_new	8	15	10	9	24	13	17	12	13	5
GTAATAGAGAGACGCC	alt_5986_new	6	8	8	9	9	4	6	11	18	6
TGTACGTATTCTCGGT	alt_5986_new	21	33	44	26	30	18	36	24	29	31
TTAGAATGTAGTTGTG	alt_5986_new	4	19	11	10	7	9	11	8	10	5
ACCCGAACTACGGGCG	alt_5986_new	6	8	7	5	8	4	5	5	3	4
GCTTCAATTCAAGTGG	alt_5986_new	0	0	0	0	0	0	0	0	0	0
CTCGGTACTGTCCGAT	alt_5986_new	18	26	19	26	24	22	24	18	27	11
GGACCGCGTTGGGGGT	alt_5986_new	10	15	21	15	14	11	15	12	11	8
CGGATGGGAGCGCTCC	alt_5986_new	8	6	8	9	8	8	5	11	4	3
CAGAGAGAACTCGCCG	alt_5986_new	32	36	36	31	35	42	51	38	53	32
GTTTCGCTACTAGATG	alt_5986_new	11	16	12	6	20	7	20	12	8	10
TGGTTTATCGGAGCAC	alt_5986_new	27	30	24	28	33	24	35	20	33	24
TGTATTAACCTCTGCC	alt_5986_new	31	43	44	26	54	36	60	51	38	44
TTATGCTACTTCCTAC	alt_5986_new	9	22	12	10	10	8	10	8	15	10
TAACTATCCCGGTCGA	alt_5986_new	69	112	80	63	122	62	101	68	124	44
ATTTTTTAGTACTTCT	alt_5986_new	11	19	8	11	16	17	16	5	20	14
GACCAGCTGGGAACCA	ref_5986_new	53	55	48	49	53	46	61	37	54	20
ATTGGGGATCGACTGC	alt_5986_new	1	11	15	8	9	5	16	5	10	8
GGAGAAACAATAATCA	alt_5986_new	0	0	0	0	0	0	0	0	0	0
AACAGAACATTACTCA	alt_5986_new	27	22	19	22	27	19	32	23	30	20
CTAGCATTATGTCATA	alt_5986_new	8	12	16	11	15	8	9	9	12	13
ATCTGCTCGCATTATA	alt_5986_new	205	310	225	181	325	177	353	184	368	150
AACGAGTGTATGAGGG	alt_5986_new	0	0	0	0	0	0	0	0	0	0
GTACTCATTAGTTTTT	alt_5986_new	0	0	0	0	0	0	0	0	0	0
AGTCTGCTGAACCCTA	alt_5986_new	12	15	22	17	17	15	29	13	16	8
AAGTGGCTTTTGCGAC	alt_5986_new	12	8	12	5	6	12	6	12	20	5
CCATAGTTAGCACTCT	alt_5986_new	0	0	0	0	0	0	0	0	0	0
CGCGCAGACCTGCAAG	alt_5986_new	54	76	60	41	81	46	91	44	80	39
GAGGTTACACCAGCAT	alt_5986_new	18	36	31	25	37	20	29	21	38	20
GGGTTACGCGCCTATT	alt_5986_new	46	81	65	37	62	30	58	54	53	54
ATATCCCTTTATGGAG	alt_5986_new	4	3	4	1	3	0	1	2	8	1
ACCCTGCCGGTTGTCA	ref_5986_new	0	0	0	0	0	0	0	0	0	0
CATGCGGCAGGTTCCA	alt_496_missing	30	23	43	45	32	29	39	33	32	37
AGTAGCGTCAATTTCC	alt_496_missing	5	4	2	2	3	5	2	3	3	5
CTGCATCGCTCTCCAA	alt_496_missing	36	33	42	23	23	37	22	31	25	22
GTTCTGTTTAATTGCG	alt_496_missing	63	47	63	66	56	50	50	46	61	50
AGAGTGAATTGTGCAA	alt_496_missing	9	5	11	6	6	5	11	7	6	4
GGGCAGGGCATACATA	alt_496_missing	0	0	0	0	0	0	0	0	0	0
TGATCGGAATTATTAT	alt_496_missing	7	4	11	5	8	18	3	5	8	8
CAGCCTTTCTGGTTCA	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
TATCAGGACCCTTCAT	ref_5130_missing	10	11	13	7	10	6	13	9	8	10
TCTGACATTGTTTTAG	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
TTCGTCTAGGTGGACA	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
TTCAGCAACGTTTGAC	ref_5130_missing	25	20	27	17	20	18	19	7	20	8
GACGTGATATTCTGGC	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
CTCGGCGCGGCTATAC	ref_5130_missing	19	16	13	14	24	17	31	9	23	15
GGACTATCGCAACTCG	ref_5130_missing	12	13	11	10	17	9	18	11	13	9
CTGCATGATAACCCGA	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
GGCTTCCAACTGGACC	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
GGTCTTAAATAGGAAT	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
GTAATTGGACATTGAC	ref_5130_missing	9	9	4	2	9	4	8	1	12	8
TTCCGCCAGTGCATGT	ref_5130_missing	11	12	14	12	7	14	17	5	12	10
TGTTTATATAGTCTAT	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
TGCTTCCTTCGCGGCT	ref_5130_missing	35	39	33	39	38	27	44	32	35	25
TAATGTAAGCTTTAGT	ref_5130_missing	0	0	0	0	0	0	0	0	0	0
GAGACTAGGCTTACTG	ref_5130_missing	31	33	27	22	33	31	23	15	23	18
TTTAGTCATACATCCG	ref_3571_missing	42	37	41	34	45	40	40	27	64	40
ACTACCGCAATCCAGA	ref_3571_missing	26	48	25	28	35	29	44	40	40	19
TATTGCTCACGGGACG	ref_3571_missing	0	0	0	0	0	0	0	0	0	0
CAGTTTCGGACCCGCC	ref_3571_missing	14	17	22	13	18	15	25	27	28	16
GCATTAATACCGCTGC	ref_3571_missing	42	51	53	52	43	32	48	37	63	47
GGTATCATGATGTCTC	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CAGCATCATATCGCCG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CTTCCGGCCATTACGC	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CACACCAATTTTACAC	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TGGGCTGTTGTACTCG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
ACCCCGAGCGTATCTA	alt_471_missing	0	0	0	0	0	0	0	0	0	0
ACATGCCCATAATTTT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
AGTCAGATAATGGCCT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GGATTGTCAATTAGAA	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GACCCGTCTTATTTGG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TGTGTCCTCCTCGGGG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CTTCTTCTTCCTGATA	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TCTTACCTGGTTGACA	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GGTTTGTCGATCCACT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
AACCCTTTATTGCACG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
AAGCCCTTTGCGAGGT	alt_471_missing	0	1	0	0	2	0	1	1	1	0
TTCAACAGGATTCGAT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CGCACTAATATATGAA	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GCTTCCCTTCCTTAAG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TCATTCTCTCATTTGG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CGTAGTTTAGAAGAGG	alt_471_missing	0	0	0	0	1	0	1	0	0	0
ACACCCAGTCACAGTT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TTACGAGTCATTTAAT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TACGCTTGTTGCGAGA	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CGGTTGTGGGTCTGAT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TAATGCCCGGAACACG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GTTACGGAGAATGCAG	alt_471_missing	0	0	0	0	0	0	1	0	1	0
TGAAAGCCTGCGACCG	alt_471_missing	0	0	2	0	1	0	0	0	0	0
GCTAAACGCTACTAAT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GCTTGCGCCAGACGGC	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GGATGAAGACAACTTT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TATTTCTGGACTTCCC	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GCCCGGTCTACTCAGT	alt_471_missing	3	8	4	1	13	8	10	2	6	7
TGAAGAGGGTTATGAA	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CTGGAGCCTTTATTGG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GTCTATCTGGGATATG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GAAAGCATCAGTTCAT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
ATGCCCTATTAATGTT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TAATCCTCTAGAACAG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TGCAAATTGAGCCTGT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
TTTGCGTGAACCTAGC	alt_471_missing	0	0	0	0	0	0	0	0	0	0
CTTTCCTTCTACAACG	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GTGTCCTAGCAGGCGT	alt_471_missing	0	0	0	0	0	0	0	0	0	0
GTGGTATCATACAGAG	alt_1395_missing	3	8	6	2	2	1	4	5	15	4
CACCGGTCATTGCACA	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
GTTGTCATCGCTTCGA	alt_1395_missing	6	13	9	7	12	7	7	4	7	4
CACTAGCTTTGGGCAC	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
CCCTGACCTTGTATGG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
ACTCGGATGTTGGTTG	alt_1395_missing	34	63	39	22	45	27	56	22	71	28
TTTCACAGTCACCGAT	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
TGGGTGTATGGCATTT	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
CCGTCTGCTCCGCTTG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
ATCCTATGCCTGTTGC	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
CCACTCCATGCGTACA	alt_1395_missing	2	0	0	0	2	1	0	2	3	1
CCATGTACCTTCTAAG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
GGGTTGCACTCTGCGG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
AGCACTCTTTGTTCGT	alt_1395_missing	8	30	15	12	28	9	19	7	32	8
AAACTGCCTATTTTAT	alt_1395_missing	17	39	21	8	39	16	35	13	49	10
CCTGTCTGACCTTGTG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
ATGCACCACTTCAACT	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
ATGTATGTTGGTCTAT	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
CCGTCTTAACGCATCG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
TTCCTGCGGAAAGAGA	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
TTTAAGCTCGACGTTA	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
GAGGTCTTACAGTTAG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
GCCTAAACTTAAACGC	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
ACTGGCCACGCTGGCT	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
ATGGTCACCCTCAACT	alt_1395_missing	11	13	10	8	17	11	26	3	21	5
TGCGCAGAGAGGTCAA	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
GGCCCGGCGTAGTGCT	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
GCTGCACTGTTTCGAA	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
CATGATGAACTAGCGC	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
CTGCAGGTTTGGCTCG	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
AACTGGCGCCCAGTTC	alt_1395_missing	0	2	2	0	1	0	0	0	5	1
TCGTCTGTCGTTTGGC	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
ATGTAGAGCTCATCAT	alt_1395_missing	0	0	0	0	0	0	0	0	0	0
TGGTACGCATTCCCAG	ref_3213_missing	21	25	29	20	18	26	20	35	12	19
CGGCATGGTTGTTTTA	ref_3213_missing	10	4	8	7	4	8	5	4	0	3
ACTCGGCTTTTGATTA	ref_3213_missing	4	12	5	3	11	6	6	3	9	7
GTAGCACCCTGGTTCC	ref_3213_missing	44	43	38	46	33	30	25	31	38	35
GCCCGTCACTACTTTA	ref_3213_missing	18	16	32	34	27	10	32	21	18	17
AGGTGCTTTTCTTTAT	ref_3213_missing	49	48	68	69	51	57	38	47	41	54
TGGTTTTTGTTCCTTA	ref_3213_missing	0	0	0	0	0	0	0	0	0	0
TGTTTGTCCATAGAGG	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
ACTATATACCATCACC	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
GAGGACGCTCGTGTTG	alt_3569_RC	19	37	19	31	28	20	39	22	29	15
TTTAATAAGAAAACCT	alt_3569_RC	0	1	1	0	3	0	0	0	0	0
AGGGTAGCATACAGGT	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
TACAGACCTCTCAGAG	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
ATCTGGCTTAGACTCC	alt_3569_RC	21	17	12	12	30	14	20	11	29	17
GGGTTAGCGGCGAGAG	alt_3569_RC	36	38	56	36	38	28	46	32	50	24
CATCACTTTTACTTAG	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
CTTAATACGGTGTCAG	alt_3569_RC	2	4	1	5	3	2	2	1	2	1
TGTCCGACATAACCTG	alt_3569_RC	5	22	18	15	20	10	18	7	17	8
CTTGTGTTCGTAAGCC	alt_3569_RC	50	85	54	50	61	58	86	50	93	28
CCCGCTCGCCGGCCGC	alt_3569_RC	47	81	61	55	62	46	81	40	53	45
TATCCGTTCTCCCTCG	alt_3569_RC	25	48	18	26	44	15	55	16	57	17
GCCCCTAGTGGTGAAG	alt_3569_RC	24	55	32	24	54	14	52	16	55	24
GGGCTATGCAACATTT	alt_3569_RC	16	31	30	13	31	15	24	19	20	10
CGTTGGTATGCTATCG	alt_3569_RC	40	41	19	17	38	16	46	15	30	14
GCTTATTCACAGTTCT	alt_3569_RC	89	115	93	93	164	78	165	77	132	77
GCCTTTAGGGGACCGG	alt_3569_RC	7	17	12	6	10	8	19	10	11	7
ATAGGATTAAAGTCGT	alt_3569_RC	22	16	14	12	12	13	25	12	13	16
GATTGGGTATATAGTA	alt_3569_RC	36	43	21	32	63	32	49	22	39	35
CACCCGCTTCCCCCGG	alt_3569_RC	27	26	31	28	31	28	26	30	23	28
AGTCCCAATTAAACAG	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
CTTTTCGTAAAATCGC	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
CTCATCAAGTTAGGAT	alt_3569_RC	23	34	19	26	33	13	31	27	27	15
CCACTGTGTGCCCTTT	alt_3569_RC	80	288	95	107	273	90	321	107	333	72
AACTGGACCGAGAAGC	alt_3569_RC	84	88	82	80	86	71	93	78	100	62
TGCGTAAATACATCCG	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
CCCAGCCTCCGCCCCA	alt_3569_RC	27	92	47	38	115	32	93	24	85	23
GCGTACTCCTGGGTAC	alt_3569_RC	0	0	0	0	0	0	0	0	0	0
AATAATCGAACTACTT	alt_3569_RC	53	75	82	47	80	46	70	44	84	37
GTAATACCCAGGAGGA	alt_3569_RC	44	59	54	50	56	53	73	50	52	60
GCTCTTATTTTTGTAA	alt_3569_RC	2	8	3	1	6	5	5	3	6	2
CAGTCTTAGTACCATC	alt_3569_RC	23	39	21	25	31	13	48	31	37	20
ATAACAGGATCGCTGA	ref_2108_missing	8	1	8	7	7	3	10	6	6	4
TTGACCCGTTAGGTTA	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
CCAGCCCGATCGGGCA	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
CTCGGTCGCAGTATGT	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
TGGCGAATTACTGAAC	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
CGAAGGTAGTGCCCAC	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
ATATGATTTTCATCTA	ref_2108_missing	2	2	6	2	3	8	7	1	2	1
AAATTAGACGGCGCCG	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
TGGCTATGCCTGTATC	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
GCATATAAGATCGAGA	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
TATATTCACCGGGGTG	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
GTACGACCAGTTACGA	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
ACCCGTCTGAACAGGG	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
ATGCAAGCCGGTTATC	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
ACTGTCTACTGCATTA	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
CTTAGGGTACCAAAGC	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
CTTAGATAGTTCAACT	ref_2108_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTTCCCTGTTTA	ref_2108_missing	5	6	2	8	11	6	7	6	8	3
CGGCTTAGGGTTGGTT	ref_548_RC	624	154	814	741	176	626	155	651	194	599
CTGAAGGCTTAGAACG	ref_548_RC	234	57	267	229	62	208	59	220	64	164
CGTTATTTAGATCTGG	ref_548_RC	191	60	231	203	46	173	39	175	57	156
ATATATTTGCCCGTGG	ref_548_RC	116	32	143	133	30	85	23	131	38	101
GCTTGTACTAACAGAC	ref_3422_missing	333	266	378	368	316	316	302	315	309	292
AGTCAACCCTGCCCAA	alt_2179_missing	69	31	57	65	33	60	35	65	42	61
TTTTAGTTCACCCTAC	alt_2179_missing	22	27	37	20	12	33	14	24	15	24
TTCACGTCATTTGATA	alt_4034_missing	0	0	0	0	0	0	0	0	0	0
TCTTCCCGGGTGAAGG	alt_4034_missing	0	0	0	0	0	0	0	0	0	0
ACCCCAGTTGGCTAAC	alt_4034_missing	0	0	0	0	0	0	0	0	0	0
AGACAAGGGCGTTTAA	alt_4034_missing	0	1	0	0	0	1	0	2	0	0
CTTGTCTCGTGACATC	alt_4034_missing	0	0	0	0	0	0	0	0	0	0
AAGGTACGTAATATAA	alt_4034_missing	0	0	0	0	0	0	0	0	0	0
TGCCGCGTTTACTGAA	alt_4034_missing	0	0	0	0	0	0	0	0	0	0
TGTCCTCGAATCACTG	ref_5689_new	70	25	80	81	33	66	26	79	37	74
CCCCGGGTTTGCTCAG	ref_5689_new	19	19	23	23	22	7	16	20	19	22
CGCGTGTATTAACGTT	ref_5689_new	62	30	68	58	25	45	30	52	16	50
CTAGATTTACTGCTTC	ref_5689_new	23	16	25	15	23	13	24	19	17	13
ATACGGGCAGTTTCTC	ref_5689_new	103	51	139	148	53	103	56	121	63	85
GAGCGTCCTAATTTTA	ref_5689_new	0	0	0	0	0	0	0	0	0	0
TCTAACGGCGGCGCAG	ref_5689_new	46	9	57	63	23	34	16	40	18	45
TCCTAGGGGAGTGCTG	ref_5689_new	30	14	48	33	21	28	20	32	18	48
CAATAGTTTTTCTAAC	ref_5689_new	74	42	98	98	40	59	45	78	34	69
GCTTTGGATGATTCCT	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
TAGACGACGGCCCAGA	ref_4012_reverse	19	8	22	16	8	21	17	12	11	15
GGACTATGGTAGTATC	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
CTTGTTTCACGATCCG	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
CCAGCTAGAAAGCCTA	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
ATAAACGCCACTTGTG	ref_4012_reverse	12	11	10	14	12	4	8	7	9	12
AGATGGCCAGGTGCGT	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
TGCATTTTTGTGGTAC	ref_4012_reverse	8	4	4	4	1	3	4	5	4	1
CATTACTCCATATTTA	ref_4012_reverse	20	13	18	24	8	13	11	18	22	17
TAACTGGGTTTTGCTA	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
GGAGTAATTCGAAGAC	ref_4012_reverse	62	40	65	52	46	60	54	44	41	43
TATGAAACTATGGGTG	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
CTTGCATGTGCCCCTA	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
ATTGACTTTGGTCTGG	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGTTGCGTTCCTA	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
AGGGACATCCGGCAGT	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
TTGCATCTATCTTTAA	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
TTGCAAAATTTTCTAG	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
GCTAATGGAACGGCAC	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
GTTTAGGGCACCCCAT	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
ACTTCCTCGAGTGGGG	ref_4012_reverse	11	8	15	20	10	19	15	13	11	18
GGTAGATGGGACCAAC	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
TAGCAAAACATTCCTG	ref_4012_reverse	48	28	42	48	24	34	37	44	33	39
GTACGATTAGTCTGGC	ref_4012_reverse	7	1	8	7	4	2	2	6	3	3
GGTTTGCTCCGTCTAC	ref_4012_reverse	4	6	6	4	8	3	6	10	11	7
GTTCAGCGCAATGGTC	ref_4012_reverse	6	12	4	2	18	6	13	9	9	4
GCAGACTAAACCTGTC	ref_4012_reverse	11	8	7	16	5	12	7	8	12	7
TTTTGCTAAATCCCTT	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
GGCACAGTTTTTTATT	ref_4012_reverse	0	0	0	0	0	0	0	0	0	0
GTTGAGAAGGCCCGGC	alt_5895_new	20	5	17	11	7	11	9	13	14	15
AGGGGTCATTACTTCA	ref_5895_new	337	221	440	427	215	333	224	375	204	298
GACTGAAACGTAATCA	alt_5895_new	28	9	28	18	10	19	5	24	8	16
GATCGAACTTACTCTA	alt_5895_new	70	32	96	64	36	65	45	78	43	60
ATTTTTCCGGCGCCCC	alt_5895_new	210	89	260	254	90	217	143	194	116	201
CTCAACATGCGACTGA	alt_5895_new	0	0	0	0	0	0	0	0	0	0
AACGTGTGAGTTATCA	alt_5895_new	61	40	85	79	49	59	67	73	51	46
AGCTCCCTGAGTGAAC	alt_5895_new	53	45	68	59	66	43	63	47	69	51
GTTTGACGGGTGATAT	alt_5895_new	104	60	122	103	44	96	81	91	84	75
TTGGGGTCTGGTTCAG	alt_5895_new	107	48	111	97	38	83	68	63	56	83
CTCGTAGGCTGAGTTT	alt_5895_new	25	27	43	42	31	31	32	29	34	23
ATTTGTCAGTTTAGCC	alt_5895_new	69	37	93	82	50	69	50	80	39	91
TACGGCTGACGGATGT	alt_5895_new	20	15	34	23	6	16	12	24	10	20
TACCTACAGTCTGCCT	alt_5895_new	0	0	0	0	0	0	0	0	0	0
GCTTCTATTTATTCAT	alt_5895_new	90	47	93	79	34	82	32	77	38	56
CCCCCTTCTAAATTTT	alt_5895_new	8	9	10	18	6	11	5	10	7	11
GAACTGATAATCAGTA	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TTCAGATTATCCTAGT	alt_5895_new	15	13	30	17	11	14	11	19	18	7
CGCGCGGCGGTGTCTT	alt_5895_new	20	13	23	13	6	12	6	8	10	13
TCCGATCCGTCAGATA	alt_5895_new	20	11	20	15	11	7	11	25	8	12
TTCTGTGAAGGGGTTG	alt_5895_new	62	29	58	58	47	65	35	58	45	30
GCCCGTACACAATGAA	alt_5895_new	0	0	0	0	0	0	0	0	0	0
ATATATAACGGATGCC	alt_5895_new	68	47	94	68	35	70	49	61	50	50
CACAAAACGTGTGGTT	alt_5895_new	0	0	0	0	0	0	0	0	0	0
GTGATATGTTTCTGCC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
ACGGATTACAATATGA	alt_5895_new	25	6	40	36	16	27	11	36	14	24
GATTTAGTCTCTTGGT	alt_5895_new	6	4	4	1	1	5	3	2	2	2
AACGTGATCGGTCTGC	alt_5895_new	222	117	245	242	132	173	137	202	146	163
AGCCTGGCGTCATGTC	alt_5895_new	54	38	64	52	46	55	33	36	30	41
CGTACAACATGGGTGA	alt_5895_new	23	13	16	26	13	21	11	16	13	12
TTCCAAGTTTGGTGAA	alt_5895_new	10	6	17	17	9	14	9	14	15	9
TATTAGACCTGGGACG	alt_5895_new	127	60	136	108	82	117	81	109	68	103
ATTGCGTCGCTATGGG	alt_5895_new	11	8	14	14	7	11	9	11	4	11
TACCTAACCACAGTCG	alt_5895_new	14	6	10	13	9	13	9	11	3	12
GGTCGCTCATCATAAA	alt_5895_new	0	0	0	0	0	0	0	0	0	0
CATTATTGTTCCTCAT	alt_5895_new	129	78	147	136	62	101	75	115	72	102
GCTTGGTGATGCGATG	alt_5895_new	52	28	45	53	43	40	27	53	29	32
TTGATCAATTCTGGCG	alt_5895_new	55	17	54	49	18	51	26	38	30	21
CCACTTCAAGTCTTAA	alt_5895_new	7	9	17	7	7	7	13	7	9	12
TACACAGACTTGCGTC	alt_5895_new	78	61	106	84	37	82	44	82	67	87
TTTCTGCCGCCGGCCG	alt_5895_new	22	7	30	26	11	14	7	30	10	13
GCAGGCCAAGTGGTTG	alt_5895_new	42	35	47	26	28	31	22	28	30	37
GGCCTGTTATCGGACC	alt_5895_new	167	68	245	190	72	194	66	171	85	169
ATGTACGTCGTCCATA	alt_5895_new	21	10	16	30	22	17	18	23	20	18
TGGTTAAGTATTGTAA	alt_5895_new	59	49	79	62	38	48	44	55	48	56
CTTCACGTATCTAAGG	alt_5895_new	100	61	107	80	56	88	38	86	51	66
TTGATCTCTGCCACTT	alt_5895_new	164	82	195	124	88	130	80	152	58	111
GGTGCTCCCCTTCCGT	alt_5895_new	32	50	51	56	60	35	43	38	60	38
ACTAAGGGTCGGGCTA	alt_5895_new	50	27	47	38	32	33	28	63	34	50
AGGCCATTTGGTTCCG	alt_5895_new	52	28	55	65	38	53	44	47	28	49
TGAACGCCTCGCGTCG	alt_5895_new	17	11	28	23	23	10	17	16	6	14
GTGTCCTCATTAGATT	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TCCCGGAAATTGGTGA	alt_5895_new	0	0	0	0	0	0	0	0	0	0
AGGTGTTCATGGCCGT	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TGAATCCAGCTATAAC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
CAACTTTATGACACCT	alt_5895_new	14	6	14	16	11	15	7	11	6	5
CATTACTGAGTCGATG	alt_5895_new	74	33	71	59	30	44	46	61	68	55
AACCTGGGATCAAGCC	alt_5895_new	6	3	8	11	8	13	8	1	4	9
TATCTCTTAGCCTATT	alt_5895_new	52	31	73	64	32	69	36	66	43	58
ATATCATTAATATGCC	alt_5895_new	44	20	59	66	26	54	26	47	31	46
AATATCCCGAAATCTC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TCTCGTACACGCTGAG	alt_5895_new	45	34	69	53	43	59	23	48	34	45
GGTAGATCATTACGGG	alt_5895_new	39	22	67	47	22	45	21	36	34	37
CTTTCTCGTTGTCTTA	alt_5895_new	92	50	98	64	66	75	59	67	48	59
GTGGTTTCGACCCGTG	alt_5895_new	15	10	16	14	11	7	11	11	10	12
AGTGCTGGTGTGGAGT	alt_5895_new	291	152	332	248	176	268	186	280	202	245
CCCTTCAAGTAAGTCT	alt_5895_new	84	42	107	71	43	61	48	85	49	72
CGTAATCTGTCTCGAT	alt_5895_new	41	22	46	28	17	24	21	31	12	18
TGAAACACATACCATT	alt_5895_new	125	70	141	129	89	143	82	140	75	131
CCTGAACTACAGCCCC	alt_5895_new	5	3	5	9	5	2	0	6	3	7
AGTCGGTTTAGTTTTT	alt_5895_new	101	49	108	95	62	82	55	73	65	91
TTGGTTTGACCGTTAA	alt_5895_new	40	24	52	50	22	38	38	35	33	34
ATGTCTAAATTTCTTT	alt_5895_new	46	22	43	32	24	34	16	31	27	24
CGGGATTTGCGCTCGG	alt_5895_new	30	12	30	36	12	24	15	21	16	21
AGTATATTGTTAGTTT	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TGAAAACAGTCATTCC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
AAAGCTCATGGGAAGC	alt_5895_new	46	29	56	62	38	45	24	37	35	49
TCTATCGGCCACTTTG	alt_5895_new	0	0	0	0	0	0	0	0	0	0
CTCTCTCGTATGTGTC	alt_5895_new	72	58	96	94	48	84	74	72	61	90
ATCTTCTGACTAACCT	alt_5895_new	34	13	43	35	20	24	16	34	24	32
ACGCCAAGTCCGCTTT	alt_5895_new	36	31	36	38	34	32	24	40	28	30
ACGTTAGGATGGACTT	alt_5895_new	46	19	63	26	26	36	28	35	22	34
TCTTCCGTTTTGATGC	alt_5895_new	181	186	217	226	184	139	195	174	186	170
TCGGTGCCCCGTCGTG	alt_5895_new	26	45	46	28	38	21	43	27	33	26
ACCTTTTGACGTTTGG	alt_5895_new	18	31	19	26	24	21	25	28	10	21
CGTTGAAGCGTTGCCG	alt_5895_new	39	28	37	44	23	21	24	48	28	31
TCTCCCCTCCTTGTTG	alt_5895_new	18	20	20	16	10	20	12	11	16	15
GTGTTAGTTTTAGACA	alt_5895_new	25	13	37	38	23	40	19	26	14	23
GGATGAAGGGGTGCAT	alt_5895_new	71	35	49	38	31	47	29	48	28	37
TGTTTGATGATAGCTC	alt_5895_new	6	4	4	5	4	5	1	6	6	8
GTGACCGGTTTACCTA	alt_5895_new	0	0	0	0	0	0	0	0	0	0
AACGCCCGTGATGGGA	alt_5895_new	63	28	87	59	33	49	49	66	42	78
GGGGTCAATAGGCATT	alt_5895_new	9	7	15	6	8	6	11	14	9	9
CCCTGGTAGTCCCATC	alt_5895_new	64	99	79	91	86	56	82	63	111	59
AATCCATGGCCCGACC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
GTGATCGGCGAGACAG	alt_5895_new	105	65	154	116	55	91	65	108	85	109
GCACACGGTTGCCATT	alt_5895_new	21	12	37	29	21	25	20	27	14	17
GACGTCTTTTCCAGAG	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TGTTCTTTGGGCGTGC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TTCGCTGTAACGCGCA	alt_5895_new	40	26	41	29	32	33	23	41	18	27
ACCGCAGTTATTTTAC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TGACTCGAAATCGACA	alt_5895_new	58	34	90	51	31	63	39	50	43	67
CATCTTATGAGGTTAT	alt_5895_new	58	29	81	41	31	58	23	57	15	48
GGGGAAGTCAGGAGTT	alt_5895_new	49	32	60	57	34	46	47	43	53	61
TGAACGCCAGTTGGGC	alt_5895_new	64	42	50	66	32	53	39	60	31	49
GCCATTCACCGGAACT	alt_5895_new	31	25	29	34	30	24	19	27	32	22
AGATGGTGTGTGTGCG	alt_5895_new	0	0	0	0	0	0	0	0	0	0
ATGTATTTTTAAATTG	alt_5895_new	0	0	0	0	0	0	0	0	0	0
TTTCCCCACACACCCG	alt_5895_new	142	75	157	108	95	103	80	106	109	101
TCTTCAATCATTTAAG	alt_5895_new	75	41	107	96	47	83	37	75	51	62
GCAGCTATCTCATACC	alt_5895_new	0	0	0	0	0	0	0	0	0	0
GGCATTCTTATGCCAT	alt_5895_new	51	19	69	61	24	49	33	37	37	44
AGGGGCCTGTCAATCT	alt_5895_new	77	43	116	74	43	80	46	82	54	58
GTTGTTTTGCCGCAAT	alt_5895_new	9	2	2	5	0	4	2	3	4	1
GCCGCGATTTGTAGCT	alt_5895_new	6	8	15	15	10	15	6	9	7	8
ACAGGCCCAACCATTC	alt_5895_new	21	13	26	29	13	15	11	21	6	15
AGCCAATCCAACTCTA	alt_5895_new	4	7	19	7	7	5	5	4	1	8
TCTAACGGAGTTTATG	alt_5895_new	23	12	16	25	14	23	15	11	16	19
CTTGTACCAAAGCATA	alt_5895_new	0	0	0	0	0	0	0	0	0	0
CCGTGGGCCAACACAA	alt_5895_new	66	33	91	66	55	60	47	54	70	62
CTGCTTTTCTCGGAGT	alt_5895_new	110	89	150	118	67	103	81	106	76	120
GCTGGGGCTTGTCCAT	alt_5895_new	162	106	207	183	96	154	119	172	115	161
CGCTGCTAACTGCTTT	ref_4891_missing	0	0	0	0	0	0	0	0	0	0
CTTCGGATTGCATGGA	ref_4891_missing	0	0	0	0	0	0	0	0	0	0
CATTTAGCGGATCCTC	ref_4891_missing	1	8	6	5	2	3	1	4	1	0
GTCTTCCATTGGAAGT	alt_5938_new	189	97	169	141	81	134	104	138	81	131
GCGGATGTCGAGGAAA	alt_5938_new	138	67	126	106	72	122	83	145	96	118
ATCAGCCTTTCTACCT	alt_5938_new	0	0	0	0	0	0	0	0	0	0
CTTTTTCTCTAGACCA	alt_5938_new	0	0	0	0	0	0	0	0	0	0
ATATAGGATGTTGGGT	alt_5938_new	24	9	26	28	18	24	17	16	20	19
TATTTTGGCGAGTGTT	alt_5938_new	63	32	104	90	37	76	48	84	56	76
TGTCAATTTTATTTAT	alt_5938_new	16	9	18	25	8	25	9	14	10	14
GTTTCATGCATATAGC	alt_5938_new	65	37	80	55	48	59	56	68	41	73
TGTTCTAGAGCCTGAT	alt_5938_new	0	0	0	0	0	0	0	0	0	0
GTCTAATTCTGTTATG	alt_5938_new	12	7	26	21	11	18	7	16	12	14
GGGTCCCCCGTAAGCA	alt_5938_new	60	45	73	70	36	52	50	58	45	66
TAAAACGACTCTCATG	alt_5938_new	0	4	2	2	4	1	0	2	2	5
AAGTACTCATTTATGG	alt_5938_new	0	0	0	0	0	0	0	0	0	0
CGTTTTTCTCTAGTCG	alt_5938_new	277	148	375	298	184	273	195	261	178	261
CCGAACCTGCGGGGTA	alt_5938_new	13	8	18	16	2	19	9	20	8	14
TCATGTCGACAATTTA	alt_5938_new	129	61	152	141	84	127	72	141	89	111
TAGATCATTTGATTAC	alt_5938_new	0	0	0	0	0	0	0	0	0	0
TTATTCATGAAGTGAT	ref_2179_missing	134	92	186	145	92	117	78	153	74	119
TCCGCGGGTCTGGTTA	ref_2179_missing	0	0	0	0	0	0	0	0	0	0
AATTAATTACCCGCGG	alt_3984_missing	0	0	0	0	0	0	0	0	0	0
TATGTCCTGTTATATG	alt_3984_missing	0	0	0	0	0	0	0	0	0	0
CAATATCGGGCATATT	alt_3984_missing	0	0	0	0	0	0	0	0	0	0
TACAGTAATGGCTTCT	alt_3984_missing	187	190	241	233	219	165	198	146	189	166
TCGAGGGCATCTACTG	alt_3984_missing	437	482	518	460	551	398	526	474	526	439
CGGGTATGATTTCGAA	alt_3984_missing	15	13	18	16	17	9	15	16	23	11
CACGTATCGTAGAGCG	alt_2289_missing	65	110	88	62	98	85	84	80	108	66
CGGGGATGATGGGTTG	alt_2289_missing	22	28	23	20	24	18	19	21	23	27
GCGTTTTCCTGTATGC	alt_2289_missing	102	155	132	121	132	112	194	125	159	110
ATCAACAAGAGGGTTT	alt_2289_missing	16	19	24	18	27	18	20	18	23	20
GGTCGTCCGATCTGAA	alt_2289_missing	117	146	144	117	117	110	111	103	168	119
CTAGTCAAAAGCCGTT	alt_2289_missing	30	38	45	33	29	20	41	30	52	26
TCCGGCTCGTTCGGTG	alt_2289_missing	0	0	0	0	0	0	0	0	0	0
CACGGAATATATTGCC	ref_5986_new	199	272	274	190	306	174	281	167	297	180
CTGGTTATTAGCGTAC	ref_5986_new	35	30	23	25	28	28	36	21	24	20
GGCATCATTTGGTACA	ref_5986_new	55	68	48	45	67	55	71	59	64	40
ACCTATGATATATTAA	ref_5986_new	0	0	0	1	0	0	2	3	0	0
GTTAATATTAAGTTTC	ref_5986_new	0	8	3	4	3	1	2	2	4	1
CTGCGAATCTCGCTTA	ref_5986_new	22	21	20	12	27	23	28	19	18	16
TAACGTAGGTAAAGTC	ref_5986_new	33	30	25	22	31	25	27	22	30	20
TCTAAGTCACAATCTG	ref_5986_new	20	34	26	20	27	12	46	10	33	11
GTCAAATCAATTACTG	ref_5986_new	60	99	80	62	78	72	97	48	110	53
GCACACTTGCGGGTAG	ref_5986_new	38	35	40	24	40	38	40	24	41	22
TTCTTAAAGGCTTTGG	ref_5986_new	9	19	11	13	21	16	17	16	21	4
TTTAATTAATTTTAAG	ref_5986_new	0	0	0	0	0	0	0	0	0	0
TGTGATGCTGCATGTA	ref_5986_new	54	55	39	42	45	40	56	33	64	43
TACGTTGTCCAGGTTT	ref_5986_new	20	23	16	17	21	15	31	9	36	19
ATCGGCTCTGGTAGTT	ref_5986_new	282	362	344	284	410	287	408	258	467	267
TATTTACGCATATATC	ref_5986_new	0	0	0	0	0	0	0	0	0	0
TCTTTATTAGAGAAGC	ref_5986_new	11	16	12	12	18	11	14	6	15	6
TCCAACCATTCTTGTA	ref_5986_new	0	0	0	0	0	0	0	0	0	0
TATCGTAGCATCCCAG	ref_5986_new	11	15	11	9	9	10	15	13	12	5
TCGTATTTGCATCGTA	ref_5986_new	44	56	50	56	50	41	48	53	59	32
GGGGGGCTTTTTCTCG	ref_5986_new	0	0	0	0	0	0	0	0	0	0
GCTACTCCGTAGGCCC	ref_5986_new	0	0	0	0	0	0	0	0	0	0
TGGAGCTATTACCTGT	ref_5986_new	15	27	25	23	26	17	33	20	31	17
TAAGACATCGACCTCG	alt_716_missing	9	12	18	18	15	9	20	8	14	11
TTGTGCAGTCTAGGCT	alt_716_missing	20	23	20	24	45	20	41	26	38	11
CCTACACTCGTTTCTC	alt_716_missing	7	15	10	9	19	5	22	13	27	5
GATTTAACGTCCTTTC	alt_716_missing	3	1	5	3	8	3	4	3	5	2
CTGGATGCCGTGTGGA	alt_716_missing	66	63	55	39	73	47	77	46	94	47
GCTTGTAATAAGCGTC	alt_716_missing	42	54	47	21	67	27	46	22	54	37
ACGGCAATGCTGGAGT	alt_716_missing	0	4	5	2	5	3	4	5	3	3
GCCCTTTCTCGGAGTC	alt_716_missing	14	18	9	6	11	9	15	11	9	8
ATGTTTTATATTCGGG	alt_716_missing	1	6	7	3	10	1	7	2	9	1
GCCTCCGTTTATCCTC	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TCAGATGCCCTTCCTC	alt_716_missing	0	0	0	0	0	0	0	0	0	0
AAACATAGTCCTTCCT	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TGGTCGTCCTTTAATG	alt_716_missing	26	48	26	12	37	36	29	13	39	20
TTCTCGGAATGATTTG	alt_716_missing	10	19	5	10	12	8	13	7	16	8
TCTTCGATCTTCGTTG	alt_716_missing	67	62	54	50	82	44	59	51	68	41
TTTTAATCTGACGAAT	alt_716_missing	5	7	4	9	17	8	14	8	14	5
ACGTACCTCGCGGTTC	alt_716_missing	9	21	14	11	31	9	22	11	27	5
TTGGGAGTATCCGTTT	alt_716_missing	34	64	46	23	45	27	49	26	51	20
GGTCATTCCCTTTCGG	alt_716_missing	0	0	0	0	0	0	0	0	0	0
GTTATGGACGTTGCCT	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TTCTAAATAGTGCATA	alt_716_missing	0	2	0	2	0	0	0	0	2	1
CTATTTCGACTTGACC	alt_716_missing	1	20	3	0	17	1	16	1	33	3
TCGGTTATTGTTCTCG	alt_716_missing	2	5	0	4	3	2	3	4	3	3
TCCCGGGGTTCGTGGG	alt_716_missing	19	34	31	29	30	7	28	23	49	13
TTGTTAGCTACTGCGT	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TATGACCTTCTGGATC	alt_716_missing	8	11	11	9	4	7	3	9	10	4
ATTGATGGTAGTTTGC	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TTGGAAATGAATTGTA	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TGCCAGTTTGGGGCTT	alt_716_missing	15	36	28	28	48	21	52	16	44	27
ATTCTTTACGGCTCTA	alt_716_missing	51	76	66	47	72	40	53	30	63	34
TTAGCTTTTCAACGAA	alt_716_missing	8	14	12	2	19	11	7	9	8	8
TTCCCTGTCACTGACA	alt_716_missing	0	0	0	0	0	0	0	0	0	0
AGCGCGCTACCTATTA	alt_716_missing	9	26	20	10	23	7	33	12	26	11
CCTACCGCTGTCTACC	alt_716_missing	0	0	0	0	0	0	0	0	0	0
ATATTGGCTGAATATA	alt_716_missing	0	0	0	0	0	0	0	0	0	0
CCGAAAGTATCTCTCC	alt_716_missing	11	12	16	11	10	9	19	16	13	8
TGTTGTACTCGGATCG	alt_716_missing	7	7	8	3	5	3	5	5	2	3
TTCCTTGATTGTTAGT	alt_716_missing	10	17	17	12	21	10	17	19	18	6
CACCTAGCAGTACGGC	alt_716_missing	13	26	9	11	42	15	25	12	47	17
GCACCGCAGAAAATCT	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TAGCACTACTAGCAAT	alt_716_missing	1	0	0	0	0	2	1	0	1	0
TCTACCGTTTAGCTAC	alt_716_missing	80	57	97	80	58	71	56	56	57	47
AATCTAAGCGCCAGAT	alt_716_missing	0	0	0	0	0	0	0	0	0	0
GTGCTTTGGGTTAATT	alt_716_missing	0	0	0	0	0	0	0	0	0	0
CTATTTCTTGTTGCTG	alt_716_missing	5	19	5	7	13	1	6	8	14	7
TTCGTACAAATACTAG	alt_716_missing	3	2	3	4	3	1	1	2	2	3
TAAGGGTATGGGATGG	alt_716_missing	17	27	30	23	38	34	47	12	39	26
GGAGGTTAGTCTGGTG	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TAATTTGTGGCTTTAA	alt_716_missing	15	20	18	19	30	17	29	14	33	12
TGCGGGGCCCTCTAGC	alt_716_missing	0	0	0	0	0	0	0	0	0	0
GCTCTGTTCTCACTGA	alt_716_missing	37	45	49	36	41	28	45	26	55	32
AGTCTTCGAAAGACCA	alt_716_missing	26	28	18	17	33	19	37	15	24	10
GGTTCGAACATTTGTG	alt_716_missing	8	21	11	10	9	5	15	7	13	6
TTTAGTCCTAGTCTTC	alt_716_missing	17	27	17	19	25	26	32	23	48	17
TCGACATCGGTTTCAA	alt_716_missing	27	60	40	40	55	31	55	37	54	29
ATACACATCGTAATCT	alt_716_missing	23	43	30	13	36	23	46	15	44	27
GCCCGCTTCTTCGAAA	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TCTTTGATCGGAAAAG	alt_716_missing	0	0	0	0	0	0	0	0	0	0
TACAATATGACTCTTG	alt_716_missing	5	11	16	8	16	10	12	6	9	10
CCCAAGCTTTGCAGAG	alt_716_missing	18	43	13	8	31	16	33	17	30	11
TAACCCTCTCTTCCGA	ref_716_missing	74	80	64	48	79	55	92	54	92	53
CGATCCTATCAGGGTC	ref_716_missing	82	95	84	77	115	91	132	67	125	80
GAAAGTCTCACGTGAG	ref_716_missing	0	0	0	0	0	0	0	0	0	0
TTTCATCCCTGCCTCA	ref_716_missing	0	0	0	0	0	0	0	0	0	0
TTTATTTCCTGGGCTC	ref_716_missing	11	15	8	18	19	11	20	9	18	11
TGGACTCCTTAAAGAT	ref_716_missing	0	0	0	0	0	0	0	0	0	0
TTAGGGCCATTTTTGC	ref_716_missing	39	47	37	38	50	36	61	17	52	31
TTGGGCGGTCTGACCC	ref_716_missing	0	0	0	0	0	0	0	0	0	0
TCGGGTAGGGTACTTT	ref_716_missing	1	0	0	0	6	0	3	0	1	1
GTACAGTATAACCTTC	ref_716_missing	12	11	11	13	17	19	24	6	17	11
TACGTGGCCTCATAAG	ref_716_missing	25	46	35	25	51	32	36	21	52	19
CGAGGGGCGTTGGATT	ref_716_missing	61	90	67	44	82	41	94	67	70	59
TAGAGGTCCAACCTAG	ref_716_missing	3	23	12	14	15	13	10	14	25	14
ATCGGGGCGTTTTCCA	ref_716_missing	3	5	4	4	10	8	8	7	8	5
AATTCATCCCGATCCC	ref_716_missing	12	18	22	9	16	9	20	7	19	15
AGGTTCACGTGCCCAT	ref_716_missing	0	0	0	0	0	0	0	0	0	0
CTCTTTCTTCAACCCA	ref_716_missing	33	29	43	33	45	33	40	30	39	27
CCTCTGCCTGTACGTT	ref_716_missing	1	3	3	1	5	2	2	3	3	1
TAGGGAGGTTTACCAA	ref_716_missing	8	13	9	8	13	7	3	6	11	8
TAGGCTGCTTTGAGGT	ref_716_missing	14	22	16	26	29	19	25	11	34	17
GTTGGTCTGCCGGGTC	ref_716_missing	0	0	0	0	0	0	0	0	0	0
ACCGGCTCTCGTATAC	ref_716_missing	0	0	0	0	0	0	0	0	0	0
CAGTGTAAGGGGTTCT	ref_716_missing	17	30	8	8	25	18	27	18	21	21
TATGACGTCGGTTCCT	ref_716_missing	0	0	0	0	0	0	0	0	0	0
ACCGCGTCACTTCCGT	ref_716_missing	6	7	8	10	15	4	9	6	4	5
TGGCTGGAGGCACGAT	ref_716_missing	3	9	19	8	10	9	14	6	15	10
GTCTTTCTAGGCTGCT	ref_716_missing	8	9	7	4	7	6	17	2	12	9
ACATCGTTCGTATTTA	ref_716_missing	42	51	46	35	76	37	50	31	59	27
TTCGTTTCAGCTCTTA	ref_716_missing	20	19	11	18	19	13	17	9	16	14
TAGTCCGACCACCTTA	ref_716_missing	2	4	6	4	8	4	5	3	4	1
TTTTCCATCGTCTAAT	ref_716_missing	13	15	14	11	13	12	8	8	13	9
TACACGACGCTGCGTG	ref_716_missing	14	14	12	15	31	10	13	13	22	15
CACGGTTGTTGTTTAC	ref_716_missing	13	16	11	12	15	9	13	7	13	18
CAGACTTTCAACCTCT	ref_716_missing	16	11	9	9	18	4	14	5	6	10
GAGAGGGCACCTTATC	ref_716_missing	4	8	8	4	6	12	10	6	11	1
CCCATTGGTCTTCATA	ref_716_missing	17	20	15	13	31	21	19	20	19	20
GAGGGTTGCGCACTCG	ref_716_missing	21	40	23	18	36	17	47	8	55	23
AGCGACTACACTAGGC	ref_716_missing	26	35	35	23	30	16	26	18	43	16
GGTCAATGCTTAGAAA	ref_716_missing	44	74	78	41	82	39	79	36	75	33
TCTTCAATCGTGCATA	ref_716_missing	26	35	33	16	30	17	34	17	54	21
GGTGTTGCATGTGCCA	ref_716_missing	40	65	56	34	77	38	58	38	88	29
GGGTACTCAAATGAAA	ref_716_missing	19	24	17	15	13	14	25	14	32	19
AATTAACGTTCGTTTT	ref_716_missing	68	93	85	65	89	71	80	76	103	62
AATTACGGGCGTCACC	ref_716_missing	22	24	25	21	32	17	32	22	44	16
GCGAGTTCGTAACTCG	ref_716_missing	10	13	7	7	7	1	7	8	6	3
TTGCGGTATTATGTGC	ref_716_missing	0	0	0	0	0	0	0	0	0	0
ATTCTGCAGGTAAAAA	ref_716_missing	0	0	0	0	0	0	0	0	0	0
GTTGTACTATGCTCGG	ref_716_missing	0	0	0	0	0	0	0	0	0	0
CGGAAGGGCGTTAACC	ref_716_missing	44	58	63	42	46	56	66	45	71	40
TTCGATTGAGGTTTTT	ref_716_missing	7	2	4	1	3	1	0	2	4	4
TTCCTTGCGTCTCGTA	ref_716_missing	100	129	137	118	161	86	164	108	180	99
TACTTCGGATGGCGGT	ref_716_missing	94	125	108	111	122	97	151	116	154	107
TAGAGTTCAAGGAGTC	ref_716_missing	17	17	25	18	48	19	45	20	42	21
GCGTCTGAGATTAGCT	ref_716_missing	34	52	40	41	55	40	46	32	54	42
ATAGATTTCGTTTTAA	ref_716_missing	0	0	0	0	0	0	0	0	0	0
GGTTTTGCTTGCGATG	ref_716_missing	0	0	0	0	0	0	0	0	0	0
TGTGTTCGGTAGCCCT	ref_716_missing	17	18	15	9	21	6	15	9	19	6
TTACCCCGTCTGGGCC	ref_716_missing	0	0	0	0	0	0	0	0	0	0
TCTGTCGCCACTCGTG	ref_716_missing	20	21	33	20	27	23	19	23	16	21
GATCTATCACCGAATC	ref_716_missing	39	61	50	35	54	32	51	42	52	45
ATTTAACAATTGACTT	ref_716_missing	12	10	10	9	16	6	14	6	17	15
ACTCTCTTCGACCGCT	ref_716_missing	0	0	0	0	0	0	0	0	0	0
GATTTTCGCCATGTCA	ref_716_missing	12	9	7	4	17	9	23	6	13	13
CGGTACGACTCGGGTG	ref_716_missing	18	16	15	16	25	15	31	15	13	13
CCTTTACATGTGCTTA	ref_716_missing	2	29	1	5	26	2	27	2	27	2
GGGAAAGAGCCCGCAA	ref_716_missing	11	16	16	14	28	8	17	11	15	17
TGATTTCACGGTTCCG	ref_716_missing	0	0	0	0	0	0	0	0	0	0
ACTTGTCCTTGGGCGC	ref_716_missing	7	14	12	11	8	8	10	4	12	6
ACGTTGTAGTGTCCCG	ref_716_missing	20	22	30	21	30	17	22	17	25	18
CATATTGAGACTTAGT	ref_716_missing	0	0	0	0	0	0	0	0	0	0
TCAAGTTCGGTCTCTT	ref_716_missing	8	10	11	7	9	9	18	9	21	18
CGTCTTCCGTTCATAT	ref_716_missing	22	23	22	20	15	6	15	23	34	18
ACTGATTTTCCACTCC	ref_2985_missing	138	42	167	143	25	129	23	116	43	136
GATGCGTCAGCATCAG	ref_2985_missing	0	0	0	0	0	0	0	0	0	0
TACGTTTTAACATCAT	ref_2985_missing	77	16	78	72	6	54	13	69	6	61
TAGCTAGGTATAAGAG	ref_2985_missing	0	0	0	0	0	0	0	0	0	0
CATTTCAGTTTCACTG	alt_2709_missing	31	46	37	30	50	28	49	33	45	23
CGCCCAGGCTTACATT	alt_2709_missing	137	146	153	143	177	140	164	139	197	113
CCGACGATCTACTCCT	alt_2709_missing	75	84	93	77	97	57	99	52	94	66
TTTGGTTGACCCCCCT	alt_2709_missing	0	0	0	0	0	0	0	0	0	0
TCCAGGTGATCCCCTC	alt_2709_missing	0	0	0	0	0	0	0	0	0	0
GCGCGTCTCGTACCCG	alt_2709_missing	44	75	68	41	77	39	67	34	96	32
ACACAACCTACCCCGA	alt_2709_missing	63	88	69	77	125	49	119	49	99	39
TAGTTTCACGCACACT	alt_2709_missing	14	28	25	28	23	16	25	13	35	11
TCATGCTCCTTTTGCT	alt_2256_missing	1	11	7	2	8	7	8	8	19	9
AAAGATCAGAATCGCC	alt_2256_missing	0	0	0	0	0	0	0	0	0	0
GGGGTTGTTCGCAGCA	alt_2256_missing	0	0	0	0	0	0	0	0	0	0
TTTGCACAGGTCGTTG	alt_2256_missing	22	42	17	15	37	14	53	7	39	11
TCTTAGCTTTTTTTCC	alt_2256_missing	0	0	0	0	0	0	0	0	0	0
ACACTGCAATCCCGTT	alt_4142_missing	0	0	0	0	0	0	0	0	0	0
ATTACCCCGGAACTCA	alt_4515_missing	0	0	0	0	0	0	0	0	0	0
CACTCCGTGGTGGCTT	alt_5800_new	6	17	4	8	16	5	21	6	21	3
CTAGCACTCTGCTATG	alt_5800_new	61	51	63	57	60	43	53	43	59	24
TCTAATCTCTGGCGCT	alt_5800_new	0	0	0	0	0	0	0	0	0	0
CTAAATCCCGCTTCGT	alt_5800_new	55	58	80	74	69	46	82	62	79	67
ATTCCGTAGGTCGTCG	alt_5800_new	27	23	34	24	39	22	29	28	26	18
CTTCAAATGTGCATTA	alt_5800_new	28	40	24	28	35	24	34	27	38	27
ACTTGTACGAAGCGGC	alt_5800_new	13	11	11	5	15	10	19	6	20	10
AGCTCCCGGGATGGAA	ref_4774_missing	108	68	131	108	84	87	87	91	78	102
GTTAACCAGTTAGTGT	ref_4774_missing	4	9	11	4	11	10	6	8	11	2
ATCTATTGTCGTCCTG	ref_4774_missing	11	9	21	16	14	20	17	17	14	15
ATTTGATTGCTTGTCG	ref_4774_missing	72	75	104	94	63	90	66	59	62	61
GTGAGGCACCCCACTT	alt_866_missing	12	15	8	10	7	18	8	8	6	5
GCTTGGTTATAGAAGT	alt_866_missing	0	0	0	0	0	0	0	0	0	0
CAGGCGTCATGCAGTC	alt_866_missing	0	0	0	0	0	0	0	0	0	0
CTAGATTGTTAATCAA	alt_866_missing	21	14	17	21	16	14	17	26	18	14
AGTTTTGATCGGGGCC	alt_866_missing	101	65	110	109	65	86	68	110	80	87
GCCACTGGCTGAAGGC	alt_866_missing	64	46	89	56	85	62	62	52	77	66
TAGTGACAGCATCATC	alt_866_missing	0	0	0	0	0	0	0	0	0	0
GTGGTCCTACGTAATG	alt_866_missing	38	22	35	31	34	22	21	22	20	31
GTGGGGAATTGCCTTA	alt_866_missing	44	19	49	34	25	35	22	42	28	31
ACATATTTCCTGCAGT	alt_866_missing	0	0	0	0	0	0	0	0	0	0
ATTCACGTCCCACGGA	alt_866_missing	118	77	146	116	105	93	88	114	91	115
CCTTTTACCCGCCCCA	alt_866_missing	12	10	9	20	9	19	15	18	13	13
CCTTACTAGATGGTTT	ref_2148_missing	20	31	30	26	27	27	25	18	37	16
TTCCGCTCGTCATCTC	ref_2148_missing	38	41	52	58	52	35	39	39	40	36
GGTATTGCTAAGAACA	ref_2148_missing	37	23	42	43	28	24	39	37	25	39
TCCACATCAGGTCCTT	alt_5821_new	17	19	18	18	27	9	35	8	20	16
CCTTCAGCACTGGGGC	ref_5841_new	0	0	0	0	0	0	0	0	0	0
CATTGTCACTCCTTTC	alt_2104_missing	36	57	45	44	47	30	49	35	64	22
CCACTCGTTCCGTTCC	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GGCAAGTGTACTCGTA	alt_3569_upstream	45	78	71	59	60	57	85	68	71	41
GGATTCGAGCAGTTAA	alt_3569_upstream	7	3	5	1	4	1	1	2	1	0
CCATATTTGAGTTGGT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TTTACTTCTGTGGCTC	alt_3569_upstream	65	58	65	63	67	51	80	55	62	47
GCATCTCTCAAAGTCT	alt_3569_upstream	10	17	7	9	15	12	15	14	17	14
AAGTCGGGCTGCCATA	alt_3569_upstream	17	11	8	12	15	13	14	12	13	13
CGATCACCATTGAGCT	alt_3569_upstream	81	102	87	93	105	63	103	83	122	63
CGGGGCGCTTAGTGTT	alt_3569_upstream	39	69	45	35	73	40	57	27	54	28
TTTGTATGTACCTTGA	alt_3569_upstream	75	90	88	92	127	50	139	79	112	65
TGCAGTCACATCATTA	alt_3569_upstream	5	8	14	8	20	6	12	9	10	9
GGTGCAGCTCGTTCGC	alt_3569_upstream	2	2	2	3	1	12	2	1	6	4
AGTGTAACGTTAGCAC	alt_3569_upstream	42	55	54	57	57	42	66	38	57	34
ACACTCAGGTTCAGAC	alt_3569_upstream	8	10	11	6	9	4	4	8	10	2
TCACGTTGAAGTGCTT	alt_3569_upstream	28	35	34	29	49	23	53	37	46	20
TGTACCTTGATCCCGT	alt_3569_upstream	32	35	29	28	35	15	29	20	27	21
GATCCACCGTTTTTTG	alt_3569_upstream	26	21	20	13	27	20	28	17	23	19
TTAATTCAGTCCTACG	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CCCCGGCGTACACGAA	alt_3569_upstream	9	18	8	7	23	10	25	12	19	10
CACGTGTGTCGGACAT	alt_3569_upstream	15	22	14	17	18	17	20	8	29	23
CCCCTTTTAACCAAGT	alt_3569_upstream	21	32	16	17	39	25	40	23	45	27
TATAAAAGAAATGGAC	alt_3569_upstream	8	13	12	14	13	11	20	10	18	8
CCGTGTTAAAGTTTGT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GCCTGTTGTCCTATTT	alt_3569_upstream	14	16	16	16	15	11	29	11	15	11
GCGAATCTTGACTTGC	alt_3569_upstream	65	67	68	51	71	38	63	45	66	71
CTGTGCCTTTTAGCTC	alt_3569_upstream	47	56	51	31	68	40	55	45	70	47
TGATTGGTTCGCTCTT	alt_3569_upstream	42	37	49	31	58	28	53	27	61	42
TTCGTCCCTCAGCCAA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TGCGTTAGAACCCTCT	alt_3569_upstream	23	31	45	13	33	20	42	19	37	23
AACTACAGGTAGTTTA	alt_3569_upstream	8	4	5	3	6	5	4	2	6	7
CGAATGACTATAAGCC	alt_3569_upstream	8	4	1	3	13	1	9	0	9	0
CTGTTCGATGGAGATA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TCTTGGAGAGACTCGT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GATTGTTACCTCTTGA	alt_3569_upstream	111	161	136	115	186	98	167	137	205	92
CCGCAGTATGGCTCAG	alt_3569_upstream	6	5	6	9	8	6	14	6	14	5
GGCTACATTATTTTTC	alt_3569_upstream	11	22	22	6	22	20	14	5	13	16
ACGTTGCCTGTTAGGG	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TGCTAGGAGTCACTTA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GACCTTGACCTCGGTC	alt_3569_upstream	8	13	9	14	18	6	14	10	10	9
TCTGCCGTGTTACTTA	alt_3569_upstream	21	41	43	18	54	24	43	19	44	27
AGAGTTAAGTTCGTCA	alt_3569_upstream	16	30	36	27	43	26	56	19	55	28
GTATTACAATAGTTCA	alt_3569_upstream	25	31	22	23	34	22	20	15	29	15
TGAAGATGGCTGCTGC	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GGACAACATAGCTGCA	alt_3569_upstream	10	7	10	3	6	5	8	5	14	8
GACTTCAGCGTGTAAA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CCGCGACGTCGCAATC	alt_3569_upstream	28	38	49	43	62	30	55	27	78	25
GACGCGTGAGGCACTC	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GTGGAGCGTCCCTCCG	alt_3569_upstream	63	56	56	37	56	38	58	55	76	39
GAGCTAGTGTATCATA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GAGGATTCATCCGAAC	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
ATCTCACAGCAACCGC	alt_3569_upstream	7	5	5	9	5	4	11	3	9	6
GTCAAATGAACACCCG	alt_3569_upstream	29	30	33	19	42	27	44	25	40	18
AATATCTCTTTGTGAA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TACCAAGTTAGGCATC	alt_3569_upstream	72	84	88	70	71	63	100	45	94	50
CCCCTAGCCTCGGTAT	alt_3569_upstream	29	33	33	30	39	25	37	23	41	32
AATGCCCAGAGTAGTT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GTTCTGCCTGCCGGAG	alt_3569_upstream	65	84	87	82	100	68	115	70	97	70
AGCCCGCTTTTAATTG	alt_3569_upstream	1	5	5	11	5	4	7	5	1	4
CATTGGATATGATGGG	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
GGCGCTGCCTTCACCT	alt_3569_upstream	59	79	88	74	98	68	105	62	103	54
TAGGAAACTTTTTATT	alt_3569_upstream	3	12	13	6	10	11	16	4	14	5
CCAGACGTTTTGTTAA	alt_3569_upstream	28	44	30	38	49	40	55	25	38	23
CTAGCTAGTCTAGATT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CCGTTTATGGGCTTGT	alt_3569_upstream	33	36	28	39	40	27	41	32	28	27
TTCAAGCAACTTCAGT	alt_3569_upstream	40	63	43	39	70	25	55	49	62	35
GCAATAAGTGCGTAGT	alt_3569_upstream	128	191	205	169	223	148	220	139	238	141
CATTAATCGGGATACC	alt_3569_upstream	11	8	7	4	14	10	13	6	10	8
GGGCTACTTGAACGGG	alt_3569_upstream	37	35	36	31	47	29	27	27	51	31
CCTCCTACATGTCAAC	alt_3569_upstream	30	26	29	26	48	27	32	37	32	31
CACATTGGCGACGGCC	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TACATCACGGTTTCCG	alt_3569_upstream	12	8	14	9	20	8	7	9	17	4
TCGTCCATGCGTAAAT	alt_3569_upstream	31	33	20	35	38	24	28	27	27	20
TGTTCCCTGCCCCGGG	alt_3569_upstream	19	27	22	21	22	10	27	20	21	17
ATTTTTGTAATCACCT	alt_3569_upstream	3	5	4	3	7	4	6	1	4	2
AAGCGATGCATAGACT	alt_3569_upstream	7	17	7	7	17	6	14	8	12	11
CCTTGAGGTAAAATGG	alt_3569_upstream	8	15	16	10	16	5	10	14	20	15
GTCCCTTCTAATATTG	alt_3569_upstream	14	25	9	10	24	18	21	10	20	13
ATGCTCTCCATTGTTT	alt_3569_upstream	52	70	75	47	55	42	45	41	58	37
AAGATTACCACCGATA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CCTGCTATGCTATGTC	alt_3569_upstream	3	5	1	4	3	1	1	0	3	6
AGTGTTATCTTACCCT	alt_3569_upstream	18	28	25	18	44	20	34	18	38	22
CATTATAGTATTTTTT	alt_3569_upstream	14	22	12	14	26	15	24	22	23	17
GGTTCTCGGCCTTTAT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TATACCTTGGTAAAAG	alt_3569_upstream	11	18	13	6	16	8	18	9	15	6
ATGATTTCCTTCTGTG	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTCATTGTACTCT	alt_3569_upstream	27	31	19	20	27	19	35	16	25	24
CGGGGGACACGATACC	alt_3569_upstream	19	23	47	38	35	31	38	26	62	31
GAACCTCAGCCGTGAA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
AAGGGCCAAAGGTCTA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CCAATGACCTGGCACA	alt_3569_upstream	20	10	11	17	21	7	11	12	7	14
TTCCATATGTCAGTTT	alt_3569_upstream	25	33	27	16	30	21	36	28	31	18
TGTTTGTCACTCGATA	alt_3569_upstream	88	119	88	65	109	78	126	64	87	77
TCAATATCTGACCTTA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CGACACCCGCAGTCTA	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CGTGAAAAAAACAGAC	alt_3569_upstream	19	34	34	42	32	20	38	19	35	9
TTGAACAAGCTTAACC	alt_3569_upstream	68	69	68	56	81	47	65	51	77	38
TCGGGCTTCACCAGTC	alt_3569_upstream	14	30	20	26	26	14	25	16	25	18
TCTAAGGATTGTGGAT	alt_3569_upstream	33	46	42	31	56	29	48	36	59	29
ACCGCCACTTTATATT	alt_3569_upstream	55	49	59	65	57	34	48	35	52	25
TAATTTGAGGTCCCAC	alt_3569_upstream	13	23	27	19	23	24	20	23	39	18
TTTACAGTGCAATTTC	alt_3569_upstream	50	41	35	52	55	41	67	51	60	36
CGTGTTATCCCTTGGT	alt_3569_upstream	12	15	13	10	26	9	11	11	17	9
ACATGTATCCCTTGCA	alt_3569_upstream	41	59	55	48	56	36	62	33	57	43
GAAGGCCACCTTCCTG	alt_3569_upstream	2	4	1	3	3	1	3	2	6	2
TTGCCTTAGTTATGGG	alt_3569_upstream	0	2	1	2	2	2	4	2	1	1
AGTACATTCATGTTCC	alt_3569_upstream	6	9	11	8	15	6	16	7	17	7
GCCTGTATATCGCAAC	alt_3569_upstream	139	204	151	139	244	107	229	119	257	102
CACAAATAGCAAGGAG	alt_3569_upstream	44	28	46	45	53	40	42	25	44	36
CTTGGACCCTAGACGA	alt_3569_upstream	12	9	11	11	6	9	19	8	12	9
GAAGCTCCTAAGTTTT	alt_3569_upstream	11	16	13	18	18	12	30	10	22	21
CTGGTTGGCACTCTAC	alt_3569_upstream	3	5	2	1	4	1	8	3	7	4
GGTTTAATCGAGCATA	alt_3569_upstream	23	25	34	25	20	19	22	21	28	19
TCGAAGGATTGCTTAC	alt_3569_upstream	7	9	8	7	5	5	14	6	8	2
TTACACGCCCTTTGTG	alt_3569_upstream	33	54	26	21	52	35	41	25	59	27
CTACCTGTCAGACCCT	alt_3569_upstream	37	51	58	40	52	29	38	37	52	37
TTGCAATCTGGGCAAC	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
CGGTATCATGCCGTTT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
AGGTGGTCAAAAATCG	alt_3569_upstream	18	18	23	33	26	19	27	15	19	23
TCCCATAGGAGACTGG	alt_3569_upstream	37	28	27	11	33	20	28	16	27	25
GCTTGTTGATGACGCG	alt_3569_upstream	8	6	6	5	10	6	7	10	5	7
ATTCGAAGCACGGATC	alt_3569_upstream	29	34	51	24	45	30	58	38	39	24
CCTTTTAGAGTATGTT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TGTTCCCTCATAACGG	alt_3569_upstream	6	8	5	2	8	2	8	2	6	4
GTAGAGGTCGGTTTTG	alt_3569_upstream	21	20	21	15	21	14	22	14	29	25
CGTAGTGAGCCCTCGG	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
TCTACGGGGATACCGT	alt_3569_upstream	19	26	30	23	28	12	21	16	45	21
TCGGAGTTTCTAGGGG	alt_3569_upstream	9	12	26	13	14	18	26	12	15	11
TGTCTTTATCGCCAGA	alt_3569_upstream	8	6	10	11	9	6	8	8	8	5
GCTTCCCACATCAATA	alt_3569_upstream	5	7	6	5	1	6	9	3	7	1
GGCGGTCCATACCATG	alt_3569_upstream	69	104	58	58	89	54	110	44	87	51
CTTTCCCAGGCGTATT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
ATAGGGTATTGGCCTT	alt_3569_upstream	18	31	30	21	27	25	23	18	41	19
AACTCAGAGTGCCAAT	alt_3569_upstream	33	32	30	27	30	26	41	31	43	29
AGAGCCCTGGTTGTGA	alt_3569_upstream	25	35	25	14	29	23	38	18	36	16
CTAAGGTTTCTAGAAT	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
ATCTTACCCGGTCTAC	alt_3569_upstream	0	0	0	0	0	0	0	0	0	0
ATCATACAGGGCTCTG	ref_2104_missing	10	14	16	15	16	12	16	12	14	14
CAACTAGAACGATGAT	ref_2104_missing	0	0	0	0	0	0	0	0	0	0
TTCAACTCACGATTCA	ref_2104_missing	5	7	9	6	3	7	7	5	10	6
ATTTTTCGGTAGTTGA	ref_2104_missing	32	23	43	33	22	35	41	25	29	31
CTTGGTGATGTCGCGA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
AAAGAAGAGAGGATAC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
AAAGGTTGCCAGAAAC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GTCTGCTTACGTGCTA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GTGCTACGTACCATGT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
ATGTACCGTTAGGCTG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CTGCATTAAGGGGGCC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTTCCTGGCATATATT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GTCTCTGTTTCTCGAA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TCTATCTGACTCCTCT	ref_458_missing	0	1	0	0	0	0	3	0	0	0
GCTATTTGTAAATAAT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GCCCTTGATCTAGGTC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TCAGGGTTCGCGTTGC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CCACGTGCTCGTCTCG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGGCTTGTCGCT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CGCCTTTTTCTAGCAT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
AGTAGCACACAGTGTT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GCAAAATAACCGCGGG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTGTACACACCTTTCA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GTCCGTTTTGTTGGGT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GCCTCTGCGTGGCAAG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GGCGCCTTCACTAAGT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GTACTTTATCGCAACT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GTTAGATTTATTAGGT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TCGTGTACTCACGTTA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GATGGTCTCCAGTACT	ref_458_missing	19	10	14	12	11	15	11	10	18	9
AGCAGAGGGTGTATTC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTGCTTCCAAGGCTGC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GCGCATATTACCGGCC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TGATTCGGATGAAGGC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TACCTTCTACACAATG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TGGTACACGGAGGTGC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
AAATCCCGAACGGTGA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CTCGTCCGCGCAGGGA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TCATAATTGAGTTAAC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
AATTTGCTAGCGTACA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTATGATCAGCAGTGC	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTCGCTAGTCTCGGCG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TTGAAGTGCGTCCCGG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CACTTGTGTCGGGCTA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
TGGTTTACTATACTAG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CCCTTCTGTCAGATTG	ref_458_missing	0	0	0	0	0	0	0	0	0	0
GAGGCTAGGCTCTGGT	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CCAGGAGGCCCAGATA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
CCAACCGGCTATCGAA	ref_458_missing	0	0	0	0	0	0	0	0	0	0
ACGCTAATGGCCGACA	ref_5581_missing	82	45	86	94	48	66	39	96	56	94
TCGTGCGGATACTTAT	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
CTCGTAGTACAAGTCA	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
GGGCCCGGATTCAGAG	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
TATTAGGGCCCAATTA	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
TTGGGTCCCGCTTACA	ref_4798_missing	10	11	3	7	2	8	5	7	4	4
ACGCTATCGAGGTTCC	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
CAGTGCTCGGAGGATC	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
AGGGATCTGTCGCTCA	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
TCCTGGCGGTACCTTT	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
ACTCTTTCATACCGTG	ref_4798_missing	0	0	0	0	0	0	0	0	0	0
ATTCCGTTGCCTCGGG	ref_2947_missing	4	1	4	1	3	2	1	0	6	3
GCGGCTCTAGAACAGT	ref_2947_missing	0	0	0	0	0	0	0	0	0	0
CTGATTCCTCAAAGGC	ref_2947_missing	0	0	0	0	0	0	0	0	0	0
AGAGCTGCGTTCCGCC	ref_2947_missing	0	0	0	0	0	0	0	0	0	0
TGAGAGGTTCTAGACT	ref_2947_missing	0	0	0	0	0	0	0	0	0	0
AGCATGTTCGACTTTT	ref_1648_missing	0	0	0	0	0	0	0	0	0	0
AGTCGTTTTTGAGTAT	ref_1648_missing	31	53	37	35	50	21	59	18	53	23
CCATGGAATCACACCC	ref_1648_missing	32	83	40	28	76	36	74	40	91	30
TCTCCCGGTCCCGGGT	ref_1648_missing	3	13	6	7	9	2	19	8	13	6
TACGTATGCCCACCGC	ref_1648_missing	10	37	18	10	40	14	43	20	35	15
CGCCCACAGTTACGTG	ref_1648_missing	30	58	33	31	56	31	56	27	53	31
TCCCTTAATAGAACGA	ref_1648_missing	23	43	34	25	57	21	64	25	43	26
GATACAGATATAACTA	ref_1648_missing	37	76	60	48	75	42	80	45	100	47
CTTGAGCGGGCCGAGC	ref_1648_missing	6	11	7	1	10	6	9	2	16	3
CGCCACCATCGTGCAA	ref_1648_missing	1	7	2	2	3	0	5	0	3	0
CTTTGTAATCGTGTCT	ref_548_reverse	127	70	160	122	73	126	57	90	65	105
TGGATGTCGAATTCTG	alt_919_upstream	107	61	176	126	65	145	78	113	85	124
AGGAGCGTCCCAGGTA	alt_919_upstream	17	9	37	12	10	23	7	11	10	11
AGGTTGAGCATCTTAC	alt_919_upstream	77	44	72	82	30	74	47	75	54	55
CGGAGCTTTATAATCG	alt_919_upstream	109	56	130	112	58	102	64	80	60	67
CCGCTTCGTTTAGTGC	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
TTACACCCAGCTTAAA	alt_919_upstream	63	21	64	46	26	27	23	40	21	48
TAGATAACGCCTATCA	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
ACGCGGTAGTGTCCTT	alt_919_upstream	44	17	60	39	22	54	25	48	18	39
TTGACTTGGTTTCGCT	alt_919_upstream	285	152	297	250	137	251	110	249	160	260
CCGAACTTTCTTGATG	alt_919_upstream	48	43	67	56	44	49	33	51	36	54
TTATTAGGGCTACTGT	alt_919_upstream	175	100	199	181	72	180	80	124	96	164
TCAGCGGATGCCTTAG	alt_919_upstream	20	20	26	25	18	13	12	23	18	28
AAGCGTAGGCCGCGTT	alt_919_upstream	7	6	9	6	1	9	10	8	6	7
GACTGGGGATTATTCG	alt_919_upstream	113	63	142	114	55	95	68	103	52	107
TGGGCTAGATGGTATG	alt_919_upstream	19	9	25	13	17	24	9	19	14	14
TTTCCGCTCATAGTTT	alt_919_upstream	207	102	210	172	103	190	146	152	127	194
CTGTCCTGGGTATGGC	alt_919_upstream	68	39	74	58	32	55	31	46	36	44
GAAGCTCACAGCGTGT	alt_919_upstream	10	3	22	12	10	5	14	17	12	20
GAAGCTAGGTCAGCCT	alt_919_upstream	140	60	158	129	78	134	68	127	73	122
CTTGGCCTTAATACCA	alt_919_upstream	60	32	65	58	19	45	37	42	26	54
ACCATACAACAGATAG	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
CAATTTCCCTTTTCAT	alt_919_upstream	8	3	8	3	5	12	3	6	4	9
CTTTTGTGTACGTTCA	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
CCCCAGCGCTCGGTCT	alt_919_upstream	144	79	199	156	77	158	83	147	100	143
TTACGTCGGGACCTTT	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
AAATATTCAGGTACTC	alt_919_upstream	97	36	89	82	53	80	49	81	38	75
ACATCTGTCCGGAGGG	alt_919_upstream	30	23	36	20	12	25	18	17	19	24
ATTCCCAACCTTACGC	alt_919_upstream	30	18	32	42	30	29	28	28	23	37
GTTTGTACCGAGGTCA	alt_919_upstream	66	64	69	96	50	77	36	82	51	90
TTGCTATAGCCCAGGT	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
TGTATTTTTTTGGCCG	alt_919_upstream	11	4	20	9	2	12	5	4	6	6
GTCCCCTTGATAGTTC	alt_919_upstream	202	129	241	200	123	188	97	188	128	200
GTTTAAGATATACGCA	alt_919_upstream	81	40	97	96	50	78	31	96	43	65
TAACGCATCTAAGACG	alt_919_upstream	32	29	40	27	26	37	24	32	26	23
CCATTATAGCGCACTA	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
CACAGCATCCTTCGTC	alt_919_upstream	58	28	68	44	25	51	43	65	29	51
TGGATGGCTTCTGACT	alt_919_upstream	33	16	50	41	18	29	10	36	16	30
TTCGTTATCTAGGGCT	alt_919_upstream	106	52	150	116	58	105	80	101	75	116
CTAGCAGACCGAAGCT	alt_919_upstream	152	120	184	173	123	128	119	144	124	142
TTGTTTGCCGTTTCCG	alt_919_upstream	44	22	51	37	25	35	42	39	28	38
GTGGCCCGTCTGTGCA	alt_919_upstream	121	45	135	92	59	106	56	115	78	97
GGCCACCCGTAGGGGT	alt_919_upstream	22	20	26	26	24	28	18	18	18	17
CCAGCCAGACTGCGGA	alt_919_upstream	8	41	15	12	32	6	49	8	42	7
TCCAACTTTCGTCCTT	alt_919_upstream	74	69	120	95	72	97	66	116	65	85
GACAGGAAACATTATT	alt_919_upstream	17	9	30	22	15	21	14	25	9	22
CGTCTGCATTTTCCTC	alt_919_upstream	72	47	104	87	47	75	54	71	44	93
TGCTTCCATCGTAGTT	alt_919_upstream	13	4	25	22	15	23	11	21	17	20
GTGCTCTACCTTTAAG	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
CAAATCATTGGTTTGC	alt_919_upstream	40	31	59	53	26	37	44	43	35	45
GTATTATCCAGCCCTG	alt_919_upstream	249	144	303	278	147	255	134	256	143	217
TAGCCAGGAACTCGTA	alt_919_upstream	25	8	35	39	18	37	18	22	26	22
GTAGCACTATGCCTGA	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
CCAGTTTCAGTTTGTG	alt_919_upstream	0	0	0	0	0	0	0	0	0	0
CTGTTGGGGGACGCCA	alt_548_fdr	118	49	124	114	55	87	53	76	54	123
TGTATGGTCTCCTAAG	alt_548_fdr	129	71	170	140	51	135	89	105	83	151
GATTACCGGGTAACCT	alt_548_fdr	42	36	64	66	32	45	36	31	33	45
CATCGGGGGATTGTGA	alt_548_fdr	0	0	0	0	0	0	0	0	0	0
ATCTTTGATTTCTTCC	alt_548_fdr	86	48	113	90	33	68	48	76	44	77
GTCGTGGAGCCAGTGC	alt_548_fdr	41	20	35	27	16	29	24	45	21	32
ATTGACACTCGTAAAT	alt_548_fdr	31	12	36	13	17	18	15	15	10	18
GTTCGATGGCCACATT	alt_548_fdr	102	54	116	97	46	65	53	83	62	69
CCCTTTTCAAACTTGA	alt_4696_missing	18	33	16	13	27	10	31	9	36	8
CATAACTCTGTCCATG	alt_4696_missing	37	42	46	31	43	36	49	31	51	29
TCCATATGTCTCGGGT	alt_4696_missing	40	61	53	39	65	44	57	48	68	40
CTATACTTGCGTCTAT	alt_4696_missing	170	293	150	154	300	131	311	130	332	134
GCATGGTGGATGCAAG	alt_4696_missing	24	18	30	25	26	24	21	24	27	21
CTCCTCTGGCTCCGCT	alt_4696_missing	7	38	9	6	56	10	54	4	35	7
GAGCGGTCTAACACCT	alt_4696_missing	22	40	24	24	36	28	39	27	28	25
TCTCGCACAATACGTA	alt_4696_missing	5	6	6	4	6	9	7	3	6	1
ATAAACCATCTACCTA	alt_4696_missing	9	30	21	18	18	18	19	21	20	22
GCCAATGATGTCTGAA	alt_4696_missing	0	0	0	0	0	0	0	0	0	0
CGGTTGGAAATACACC	alt_4696_missing	0	0	0	0	0	0	0	0	0	0
GCCCCCAGATTGGGAG	alt_4696_missing	58	66	50	55	66	41	68	60	79	47
GAGTGTCGTATTTCAG	alt_4696_missing	58	46	62	51	42	52	51	60	50	57
ATGAGTCCTGTGTGCG	alt_4696_missing	5	11	11	12	18	17	7	11	13	4
TAATCTCCAGTATTAT	alt_4696_missing	61	63	67	60	64	56	62	44	69	37
CATGGCTCGAGTAATG	alt_1739_missing	0	0	0	0	0	0	0	0	0	0
GGCCGGTGGACAGGGG	alt_1739_missing	0	0	0	0	0	0	0	0	0	0
TTTGATTCCGTAATTT	alt_1739_missing	0	0	0	0	0	0	0	0	0	0
TGTCAAAGCGGGCAGA	ref_345_missing	76	92	80	88	79	90	97	67	91	63
TACTTCCTACGTTCGC	ref_345_missing	25	40	29	28	36	23	41	12	33	23
ACTCCCTACGGTCTTG	ref_345_missing	23	64	31	27	60	30	64	24	82	19
ACCCATTCATCGATGG	ref_345_missing	0	0	0	0	0	0	0	0	0	0
GCTGTTTTCGCACCTT	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
AGGCACCATTTTTGGG	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
TATTGACTTTGACTTG	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
GCCTGTTTACCGATTC	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
TCGCTTCGTTTGTCCG	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
CCACAATTTGTTTATG	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
ATACGATGTCACCTCC	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
TCTGGGTTATTGTGTA	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
TGTTGTCAGGATGGTG	alt_2307_missing	5	10	7	4	4	7	4	3	10	1
CCTTGTGGTTCACCTT	alt_2307_missing	0	0	0	0	0	0	0	0	0	0
TACTTCTGTACTGAAT	alt_4891_missing	0	0	0	0	0	0	0	0	0	0
TTTAGTTGTTGATTTT	alt_4891_missing	0	0	0	0	0	0	0	0	0	0
TGTCGCCGGGAACACG	alt_4891_missing	0	0	0	0	0	0	0	0	0	0
CGACTGTCAAGCTCCA	alt_3571_missing	73	74	84	84	89	69	87	68	80	77
TTTCGAAGCTATTTCG	alt_3571_missing	76	89	79	68	59	68	88	76	91	61
GTTGCTCAGTTGTGTC	alt_3571_missing	4	3	3	3	8	8	7	2	13	3
CTTCATGCTTGTGGCT	ref_5594_missing	124	151	153	124	172	102	154	118	161	128
CGATTATGGTGATCAC	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
CGAGGACAGGTTAGTT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
ACTCTTTTCGTAAGGT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TCTTGAGTAGCCGCTC	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
ATTTAGTTATCGCTCC	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TTTCTCCGGCTCAGTA	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
AGGTAGGTGTTTCGGT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TACAAGTCGACAGCGA	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TGGAAGTAGTATAGGG	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
GTCGGAGATTTAGGCT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
GGATCTTCGTTCCTCC	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
CAGTAACTTGCTTTGT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
ATCATACTTGGGTCAT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TCTCGGTCTGCCTTTA	alt_4012_reverse	3	3	5	10	5	6	10	6	8	9
GGCGGACGCATGCCAG	alt_4012_reverse	13	7	17	16	9	13	6	12	5	12
GTACGAGCCTTACTGT	alt_4012_reverse	1	4	9	6	3	2	6	8	3	6
GCTTTTTTTTTGAATT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TTTTCCACGCTGCCCC	alt_4012_reverse	23	12	26	15	15	14	16	12	19	10
TAGCCATTATCAAATA	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TCATGTCTCTAAGTTG	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TATCCATTCTAGAACA	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
TCTTCCTGAACAGCGT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGGTGGATTCTCT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
GCCTACGGGTGATTCT	alt_4012_reverse	0	0	0	0	0	0	0	0	0	0
CCTGGTTCATGGTCTG	alt_4012_reverse	8	5	18	8	9	6	5	12	3	12
TTGCGTCGTAATGACT	alt_4012_reverse	7	5	11	9	3	7	3	9	5	4
GAATTTGCTCCCGTTG	ref_5994_new	39	18	43	49	14	42	27	33	19	42
GCGCATAGTCAGAGCT	ref_5994_new	21	13	34	23	9	19	19	28	14	25
TACCTTGGCTAAACTT	ref_5994_new	148	85	170	180	83	123	79	113	93	131
TACTCTGTTTATCATG	ref_5994_new	6	2	9	10	2	8	1	4	2	8
CTTGACGAGCGTTAAT	ref_5994_new	16	5	17	9	2	10	8	16	15	13
AGGTAACCTCATCGGG	ref_5994_new	17	6	26	31	10	25	9	18	15	25
TTAACCAATCTACAAT	ref_5994_new	142	55	147	124	54	116	66	129	56	99
CCATCCTAAGTTAGCT	ref_2591_missing	2	6	1	2	2	1	2	0	6	1
ATTGCCGCGATCGTGT	ref_2591_missing	0	0	0	0	0	0	0	0	0	0
CATAAGGCGACTCTTT	ref_2591_missing	0	0	0	0	0	0	0	0	0	0
GATGAACCGTAGGCCT	ref_2591_missing	0	0	0	0	0	0	0	0	0	0
CCTGGCCCCTACTCAG	ref_2591_missing	0	0	0	0	0	0	0	0	0	0
TACAGCGCGAACACCG	ref_2591_missing	0	0	0	0	0	0	0	0	0	0
TTTTGACGTGCCGACA	ref_2591_missing	0	0	0	0	0	0	0	0	0	0
TCTGTGATGTCTGCCA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CATGAACGGCCCCCCC	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
GGACAAGAATTTAGTT	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CGTCAGGCTATGGCAG	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CCTTTTGGCTCTAGAG	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
GAAGGCCAGCTTTCGC	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
TTTAGCGGAACTTCCG	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
ACGTCGTTAAGCAAAT	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CTTTGTAGGGATTTCA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CGTGTCGCGTGTGGTC	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CCTCTACGATCGTTCT	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CGGTTTGTACCACCCG	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
GCGAGCTGACTATAGA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
ACAGTGCTACTATATG	alt_4899_missing	5	13	11	3	12	7	14	8	23	2
GACTGCATCTGCTCAA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
ATTGGCTGCGTATCGA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CCAATCCCCGCCACCG	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
AATTCGTGCTTCTCTT	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
TCACTTTCACGGTCGG	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
GGAATTGGACCGGCTA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CCATAAATCCTAGCGC	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
CTCCAGTGTACGTTAT	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
TTTGAGTGTGTTAGCA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
ACAGTCGGGTTATCGA	alt_4899_missing	0	0	0	0	0	0	0	0	0	0
GAATCGACTGTATTAA	alt_3629_missing	0	0	0	0	0	0	0	0	0	0
TTTTAGGTAATGTGTG	alt_3629_missing	0	0	0	0	0	0	0	0	0	0
GCTAGAACGCGGCTAA	alt_3629_missing	0	0	0	0	0	0	0	0	0	0
TGAATCCTTGATGGGT	alt_3629_missing	2	0	0	0	2	1	2	3	3	0
CTCCGGATTGTAGGAG	alt_3629_missing	0	0	0	0	0	0	0	0	0	0
TGGCCCACCGTTGTAG	alt_3629_missing	0	1	0	0	0	0	2	0	0	0
TAATCATAGATACTCT	alt_3629_missing	0	0	0	0	0	0	0	0	0	0
AATATAGGTCGCTTCA	alt_3629_missing	0	0	0	0	0	0	0	0	0	0
TCCAGCGCGTAATGAC	alt_3629_missing	0	0	0	0	0	0	0	0	0	0
GCGTGTCAATACCCAT	ref_5821_new	30	42	42	43	71	32	54	37	65	21
AGCGGAATTGTCGTTA	alt_538_missing	0	0	0	0	0	0	0	0	0	0
CCCGGGCTCTGTCTAC	alt_538_missing	0	0	0	0	0	0	0	0	0	0
TCTCTGGAGTATACAT	alt_538_missing	0	0	0	0	0	0	0	0	0	0
TACACAAGCTGACGGC	alt_538_missing	0	0	0	0	0	0	0	0	0	0
GTCGGGTATATGAACA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
CGACTCCAGATTCGAT	alt_3569_fdr	4	1	4	6	7	6	0	1	7	3
TTTGTTGGCAGGGACG	alt_3569_fdr	3	6	5	4	8	5	6	5	10	4
TCGTTCATCCGAGTAT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TGTTCGCACAGCTGTT	alt_3569_fdr	23	28	28	25	34	28	37	20	28	29
TCAGTTACAATCATGG	alt_3569_fdr	45	57	56	38	49	44	67	50	52	25
CCCCGTACTATTAGAT	alt_3569_fdr	11	24	16	11	18	12	20	8	16	11
TTGAGTTATGCAGATT	alt_3569_fdr	29	45	29	34	54	38	54	35	41	32
TGGCAATCTACTGTCA	alt_3569_fdr	39	57	35	44	60	47	62	35	63	32
GGCTGTCCTTATCGCA	alt_3569_fdr	12	19	16	10	19	12	27	17	18	7
AGTTACTATAGAGAAT	alt_3569_fdr	40	69	61	52	64	54	69	25	82	25
ATTCTCGGCAGACGAT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
CTCGTTTTGCGGACCC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GGGCTCGCGGTCAATG	alt_3569_fdr	160	221	177	170	201	148	205	141	198	122
ATTCGACACGTACGCG	alt_3569_fdr	37	51	48	34	41	30	61	39	44	34
TCACGGCTATAGTATC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TATAGTGATCGAGCCT	alt_3569_fdr	15	18	22	15	13	15	22	11	18	13
CTAGTTAACGACTATT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
ATCTGGTCATTGTTTC	alt_3569_fdr	65	66	56	63	69	55	64	46	81	29
CGGCCCATGACTTGTA	alt_3569_fdr	63	75	82	69	90	49	88	48	84	59
TTCTATAACCTGGGTT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTGGTGGCGGCGCCTT	alt_3569_fdr	87	82	74	72	76	69	83	62	70	42
TACCACTCTCATATCA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GATCATTGGCATAGAA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
CCCTTTCGTCCGATGA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
AGATCAAAGTTGCCGT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TCGGTACTGTGGCCTC	alt_3569_fdr	9	11	8	6	15	5	9	10	12	6
ACGTTCTGTGAAGACG	alt_3569_fdr	16	32	28	22	25	24	40	21	40	21
GTGTCACGTGGTTGTC	alt_3569_fdr	37	62	41	39	54	37	48	38	59	45
TTGTCTCGCGTAGATA	alt_3569_fdr	8	11	13	16	16	11	19	12	27	17
ATTCTTGATCGACACG	alt_3569_fdr	76	78	63	73	105	55	90	58	90	57
GCTGTGGTGTGTAGGT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TCGGCTCTTTGTACGT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTACCGACTTCCCCTG	alt_3569_fdr	90	159	130	119	171	67	140	97	183	89
TGAAGCATGCTTGCGA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TCGCGTATCGGGTCCG	alt_3569_fdr	29	38	30	20	32	23	28	27	45	26
GTGTTCGCTATTGCTC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
CGAGGGAGCTATGTTA	alt_3569_fdr	77	101	94	95	98	105	117	87	115	101
AGGTCTTCCTGATTTG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
CTTCCGAGTTCACTGT	alt_3569_fdr	52	49	36	69	84	45	96	56	61	58
CACTACCACTTTCAGA	alt_3569_fdr	35	23	28	23	36	25	33	24	27	27
GGGATGTTTCCTGGCT	alt_3569_fdr	11	16	13	10	17	11	15	10	13	12
ACGCTTGTACCAGCTA	alt_3569_fdr	45	60	67	47	57	51	68	41	87	43
CAAGCGTGCACATTTC	alt_3569_fdr	22	29	29	22	30	23	39	20	34	20
ATCCCTTCCGCCACTA	alt_3569_fdr	20	16	25	25	25	26	30	17	24	15
ATCAGGTGAAGTCTCA	alt_3569_fdr	17	20	18	17	17	11	14	10	22	16
CCCACGGTCATCTATG	alt_3569_fdr	26	20	17	17	35	17	17	18	29	17
CAAAGGGTAGGTTTCT	alt_3569_fdr	51	58	57	49	50	42	62	34	57	45
GGTCGGGGATTTATTT	alt_3569_fdr	41	46	46	35	47	46	43	36	62	40
TTATGACCCCTGTATA	alt_3569_fdr	37	42	35	33	30	37	40	24	45	41
TTTACTGTTATCTTTG	alt_3569_fdr	11	9	11	14	19	12	14	6	22	9
TCGGCAGAGAGGTACC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
AATGTTTTATTTAACT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TGTCTACCGAATTTGT	alt_3569_fdr	2	3	4	1	1	0	1	1	4	4
CCCTATCGGAATGATC	alt_3569_fdr	41	61	46	70	58	34	61	41	56	45
CACTCTCCTGAACTAA	alt_3569_fdr	18	16	11	15	14	7	13	13	19	15
TCACTGGAGGTCGGCG	alt_3569_fdr	45	78	66	53	70	47	80	47	80	52
ACGCTGTGGTTGTGTG	alt_3569_fdr	17	19	18	9	20	12	20	16	17	19
TAACATGATTCGTCCG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GAGCGTTTCTTTACAC	alt_3569_fdr	23	35	21	24	29	13	28	24	37	27
ACTACTGTTTGGTAGA	alt_3569_fdr	71	84	86	74	79	71	98	71	87	48
TGAGGCTACACGATTG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTTTGCGATAAAATTC	alt_3569_fdr	27	27	37	20	30	21	25	24	18	28
CCTTGCGGACGTTAAC	alt_3569_fdr	0	0	1	0	0	0	0	0	0	0
TACTCGCGTGCTCACA	alt_3569_fdr	16	23	23	22	42	26	23	23	41	10
CATGCTACGTCGGACG	alt_3569_fdr	112	150	135	103	150	92	179	94	176	98
AGGGCCTTCTCCCCGG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GCCAAAATCACGGCTC	alt_3569_fdr	19	23	24	16	22	18	23	10	16	22
GCCTTAAAGTCCCCTG	alt_3569_fdr	24	40	29	30	36	19	38	27	40	28
TCAATTGACAATCTTG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
ATTAAGTCTGAGTGAA	alt_3569_fdr	32	48	33	40	58	44	55	30	34	30
CCGTCATCCACGCCTG	alt_3569_fdr	38	94	58	43	101	42	99	26	89	36
CTTGATTTGTCCTATA	alt_3569_fdr	66	86	91	87	118	61	100	65	121	62
GGAGGGCGACCATCGT	alt_3569_fdr	22	19	27	28	15	32	23	31	12	27
TATGGTACAGAGTCTT	alt_3569_fdr	24	30	26	24	30	14	23	19	26	11
CGTTCCGTTTTGGGCA	alt_3569_fdr	42	46	37	28	51	38	47	22	40	33
TCGTCGATTACCCATC	alt_3569_fdr	12	22	30	10	30	11	15	9	24	12
TCCTATACTGATGCTC	alt_3569_fdr	28	33	38	19	33	24	35	17	32	13
TAACACCGCGGCGCGC	alt_3569_fdr	5	7	15	8	8	9	6	2	14	8
GGTTGAAGCTACCTAC	alt_3569_fdr	33	131	32	33	157	21	142	22	146	23
AATGCCGACATATCTA	alt_3569_fdr	223	209	252	204	254	213	254	192	242	197
GCGTAAGTTATGTGGA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
ACGAACTGTATTTATA	alt_3569_fdr	39	37	43	26	34	27	37	33	35	25
ACATGCGATCTCGATC	alt_3569_fdr	18	24	29	26	22	17	15	22	34	25
TACATCTAAGTCTGTC	alt_3569_fdr	48	81	58	50	73	36	65	54	62	39
TCCTTCCGGTGCTTCC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTAAAGGGTTTGAGGG	alt_3569_fdr	73	87	79	75	63	64	86	56	102	78
TTTAACGTTTGCTAGT	alt_3569_fdr	27	46	35	26	25	23	39	21	45	23
GCCCTGGTTTCAAAAA	alt_3569_fdr	25	31	37	40	31	31	51	27	35	23
CGAAGGCCTACTACCT	alt_3569_fdr	56	78	81	53	71	69	74	51	89	50
GGTCCTTCTGTTTGGC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
ATATTGGTTTCGAGCT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTTTTCTTGGCATTCT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTGTCTATCTAAAGTC	alt_3569_fdr	5	7	9	3	5	7	7	3	7	3
CCGAGTTCTTTTCCCT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTAGCGTGTTGGACTA	alt_3569_fdr	5	17	8	13	19	8	14	15	21	10
ATTTAATCTTACCTCC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTGTTTTGGTGTTTTA	alt_3569_fdr	31	58	74	30	63	44	62	42	64	40
TTAACGGCGTTATTGC	alt_3569_fdr	79	124	81	78	112	92	117	72	145	97
AAAGTATAGCGTGAAT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TAAACCTTCGCATTTC	alt_3569_fdr	64	67	61	63	69	38	56	43	66	49
GTGAGCTGCTTAGTCC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTATCGGCCGCTTTAA	alt_3569_fdr	18	45	44	28	22	32	37	25	47	21
CATTCTTCTCTCCAAA	alt_3569_fdr	26	54	32	19	38	31	43	26	54	19
AGAGCCCGAGCGGTGG	alt_3569_fdr	11	24	16	19	30	12	22	18	14	13
AACATCGCCCTTGACG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTATTAATCTTCTTCG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
ATCTAACCCCCCATTT	alt_3569_fdr	17	23	13	16	27	16	36	20	38	22
TCGGCATTCATATATC	alt_3569_fdr	41	48	38	32	32	27	41	22	37	27
AGAGAGGCGCCAAGAC	alt_3569_fdr	52	58	81	64	67	46	64	54	72	46
TATTATCCAATCGATC	alt_3569_fdr	15	19	19	27	21	26	23	20	14	12
AATGCGAGCTCCGTTT	alt_3569_fdr	60	73	73	69	76	58	86	52	74	49
CCCTCTTTTCAGCGGG	alt_3569_fdr	29	45	26	29	53	37	52	24	40	17
GGAACCAAGTAACATG	alt_3569_fdr	60	76	71	66	69	60	72	45	72	65
CGTCTTCTCTTACGAT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GTTGCTTTTATACATC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
ACATAAGACATCACAA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TAAATTGGCTCGACAC	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
ATTATTCCACGGTTAT	alt_3569_fdr	46	33	43	40	54	33	48	36	47	35
TGTTCTCCTTCCTTCC	alt_3569_fdr	13	10	8	13	3	8	5	13	7	9
CATGCTCTGCTGGTTT	alt_3569_fdr	8	6	7	2	13	5	2	8	7	4
GTGTATTCTGCGGGCG	alt_3569_fdr	22	34	34	30	37	34	27	29	59	17
TGTGACTATCCGGTGG	alt_3569_fdr	34	45	70	32	77	44	54	63	62	48
TTGGTAGTTCCTCATA	alt_3569_fdr	20	23	23	24	34	19	35	19	31	23
ATTTTGGTCAGCAGGC	alt_3569_fdr	9	16	9	9	13	10	14	9	16	8
TGTTGAGTGGATAGGC	alt_3569_fdr	15	26	12	20	28	19	29	14	26	17
TTTCGGAAGCCGAACC	alt_3569_fdr	55	61	65	54	64	47	71	36	68	33
ACCGGTGGTTATATGG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TCCGTGCATTACGCTC	alt_3569_fdr	141	163	166	149	186	127	209	141	205	101
GGGAACGTTCAATCAT	alt_3569_fdr	5	2	3	4	2	0	3	6	0	4
GACCTTGGAAGCCCTT	alt_3569_fdr	19	13	8	14	20	17	18	7	7	13
ATTGTGCAATATGACG	alt_3569_fdr	32	73	54	38	51	36	51	29	59	34
AACTGTGTCCCGCCGG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TTCGGCCCGGTTTCTG	alt_3569_fdr	61	86	89	81	93	58	88	82	82	68
CATCTCTCCTTATGTT	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TGTACATACCTGGGGC	alt_3569_fdr	78	245	84	74	224	84	246	74	266	75
TCACGCTGCATCCGTT	alt_3569_fdr	12	21	19	15	19	9	17	15	29	9
AAATACGCCTTCTTTC	alt_3569_fdr	6	9	9	6	6	7	5	5	4	8
GTCAGAATCAGGGTCG	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
GCCTTGAAGGTGAGCG	alt_3569_fdr	7	11	17	7	17	6	16	8	12	4
GTAACAGGTACTTACC	alt_3569_fdr	1	17	4	4	22	0	27	3	37	0
GGTCACCTATGATATT	alt_3569_fdr	3	5	10	3	5	5	8	8	6	2
ATGCTTTGGAAGTAAC	alt_3569_fdr	63	93	85	61	109	58	99	60	97	68
GCTTCGCGGGGTCATC	alt_3569_fdr	26	21	30	16	42	22	30	20	36	26
TGCGGGTACTGAAATA	alt_3569_fdr	0	0	0	0	0	0	0	0	0	0
TGGGTCTACGGCTGAG	alt_3569_fdr	11	12	14	17	20	20	21	18	19	12
TAATGGCCTCTTTTGG	alt_3569_fdr	12	15	6	10	8	7	12	7	9	10
ATCAAGATAGCGGAGA	alt_3569_fdr	172	205	183	177	213	155	208	174	229	150
TGGCGTTCGGTTTGTT	alt_3569_fdr	22	18	23	14	6	15	18	18	9	18
AATGTAAAGTGTTAAC	alt_3569_fdr	52	68	50	51	80	44	77	47	66	55
CAGTAAGTACTTGAAT	ref_95_missing	32	39	33	27	40	34	51	21	41	20
GCACTCTGTCCACAGT	ref_1775_missing	25	44	34	25	43	25	47	14	46	31
CTCGCCCACCTTTTTG	ref_1775_missing	49	69	58	31	119	31	72	39	84	35
GATATTCTGCATGTGC	ref_1775_missing	0	0	0	0	0	0	0	0	0	0
ATAAGTACTTTAGCCT	ref_1775_missing	18	44	18	17	39	25	49	12	50	17
ATACGTCTCGTTACCC	ref_1775_missing	28	73	38	39	71	31	67	38	76	45
CAGGAAAACCATCACG	ref_1775_missing	5	17	3	5	22	6	25	9	7	5
CCGGGATTCTGGGGTA	ref_1775_missing	105	157	143	93	157	80	160	110	165	110
ACATACTTTTGGTCTT	ref_1775_missing	0	0	0	0	0	0	0	0	0	0
TCTCTATTCTGTGGGC	ref_1775_missing	43	53	31	35	73	31	77	34	66	34
GGGTGTCCTTTGGGTG	alt_530_missing	48	116	68	49	111	65	148	65	109	66
GCTTTGCGTCGTTTTA	ref_2289_missing	67	81	81	86	74	59	95	71	92	78
AATCTGTTTCGGAGCA	ref_2289_missing	0	0	0	0	0	0	0	0	0	0
GTGTCTAAGGGAGAAT	ref_2289_missing	41	69	59	50	59	39	67	52	66	40
TAAAGGCATGCCGTTA	ref_2289_missing	86	93	99	106	96	88	108	90	109	97
CAGCGAATCCGGCACT	ref_2289_missing	1	1	2	4	6	3	6	8	6	2
GGTCAGTCTATGCAAT	ref_2289_missing	38	51	50	39	44	29	38	25	62	26
AGACCCCCGTCACCAT	alt_203_missing	3	10	9	9	5	5	13	9	12	5
GGCCCGATCTTACCGG	alt_203_missing	0	0	0	0	0	0	0	0	0	0
TCCCTGCCCAGTACTG	alt_203_missing	3	10	7	1	14	5	8	4	9	4
GAGTGCGCATTATCTG	alt_203_missing	0	0	0	0	0	0	0	0	0	0
ATGCTGCGCCTGTATA	alt_203_missing	0	0	0	0	0	0	0	0	0	0
ATTGGTAGGCCCCGGA	alt_203_missing	7	8	9	14	4	7	13	9	10	5
TATTCACCTTTGGAAC	alt_203_missing	0	0	0	0	0	0	0	0	0	0
TGGCTCCAATATGACG	alt_203_missing	0	0	0	0	0	0	0	0	0	0
TTTGAGCTCCTCTTTT	alt_203_missing	0	0	0	0	0	0	0	0	0	0
TTTTGGCGGTCCCGTT	alt_203_missing	0	0	0	0	0	0	0	0	0	0
GCTGCGCTTCTTTGAT	alt_203_missing	0	0	0	0	0	0	0	0	0	0
ACATAAGTAATACGTG	ref_1013_missing	13	16	11	10	23	12	18	11	15	15
CATTGCGCAGCCCCCA	ref_1013_missing	51	60	64	55	54	42	51	44	68	42
TGCAGCGATGTTAGTA	ref_1013_missing	30	45	54	39	55	43	64	41	52	27
TTTTCTCGTGCAGGGT	ref_1013_missing	45	74	67	60	65	37	75	43	54	35
TGAAGCGAAAAGAAAA	alt_1775_missing	13	21	13	14	19	13	25	7	23	14
GCGTGGTCCGCCCAGA	alt_1775_missing	5	7	8	6	7	5	6	3	12	1
GCGTAGTGTTTCCCGT	alt_1775_missing	27	54	31	38	53	40	64	45	58	39
TGGTTAATCTTTCTCT	alt_1775_missing	19	30	24	20	29	21	22	13	33	18
AGCTGCGTTCACGCTA	alt_1775_missing	55	102	76	68	113	69	130	53	128	49
GATTGGAGGTTTCTCC	alt_1013_missing	37	50	48	39	63	36	44	21	59	33
GCCCGGTCCCAGGAGC	alt_1013_missing	0	0	0	0	0	0	0	0	0	0
GAATTCGGGGACGCTT	alt_1013_missing	6	15	30	17	12	17	15	12	28	16
CCCAAGTATTTTCTGG	ref_866_missing	0	0	0	0	0	0	0	0	0	0
CTACCACCCCTGTTTC	ref_866_missing	19	26	37	32	25	21	24	30	24	24
GAAGACCACCCTGGCT	ref_866_missing	8	4	14	8	7	8	5	12	5	4
GAATGGTAGACTAGCA	ref_866_missing	19	13	12	20	12	21	15	20	12	17
CCACGACAGTACAGGG	ref_866_missing	66	66	92	62	52	67	68	80	61	57
CGTGTGATACCGTCCG	ref_866_missing	191	143	217	173	152	175	175	162	160	162
GACCCTTATCGGCGCG	ref_866_missing	108	94	140	123	106	106	94	88	89	111
GTCCATGATGTAATGT	ref_866_missing	28	23	33	44	19	41	24	34	25	32
CCTGAGCGCTTGGTGT	ref_866_missing	4	2	1	1	0	0	1	0	1	2
CGAAACGGGTTTATGT	alt_1712_missing	126	166	164	141	158	136	143	140	174	117
TTTAATCTTAGCCCGA	alt_1712_missing	22	28	30	26	25	26	31	19	24	27
TGATTCTGGCCAAATA	alt_1712_missing	45	38	65	52	43	38	50	27	44	25
GAGTGTCTAATTCGTG	alt_1712_missing	69	109	102	84	97	65	91	80	105	74
TCCGCGATTTTGGGCA	alt_1712_missing	14	21	17	8	15	14	35	13	21	19
AAATCTCTGCGCGTTA	alt_1712_missing	30	31	28	25	32	34	29	18	35	21
GTGTAAAGTTCCACTG	alt_1712_missing	0	0	0	0	0	0	0	0	0	0
GTCTTCAATGCGAGCA	alt_1712_missing	41	48	64	44	67	49	54	41	68	49
CTACCGTATCGTGACT	alt_1712_missing	14	72	18	19	69	8	77	14	81	9
CGTCACAGCCCCGCTG	alt_1712_missing	2	4	8	2	1	3	4	2	0	4
GCTGGCTTGCTCGCAC	alt_1712_missing	5	4	7	2	5	3	6	5	5	4
TGACGCGTTTTATAAT	alt_1712_missing	27	30	26	22	20	22	32	28	21	21
GAATATAATCCTTCCC	alt_1712_missing	72	62	82	72	66	59	72	54	71	50
GATGTGTGTAATTTGC	alt_1712_missing	7	13	23	19	17	15	17	18	28	18
ACACGTCTCTGAATAT	alt_1712_missing	33	46	47	38	44	39	40	26	57	25
TCGGTTTATAATAAAT	alt_1712_missing	36	27	34	32	44	33	45	30	33	24
GCTTTGTACGTCGCGG	alt_1712_missing	9	13	10	12	11	7	10	12	17	6
ATGCGCCGACCATCCC	alt_1712_missing	8	14	12	18	24	6	12	9	13	14
TTACGGCTACATTTGA	alt_1712_missing	55	66	74	52	58	44	77	39	65	41
TGGCCATTTATTATAT	alt_1712_missing	28	43	51	46	65	36	60	38	58	42
GGTCCGCTTAGTCCAC	alt_1712_missing	0	0	0	0	0	0	0	0	0	0
AGTTTCGATCTTTTGT	alt_1712_missing	0	0	0	0	0	0	0	0	0	0
ATAGCAGACACAACCT	alt_1712_missing	12	16	23	10	13	17	25	17	20	16
GGTTTGTTACTCTTGC	alt_1712_missing	37	48	59	50	46	46	48	42	65	50
TGCTGGGACCGCCTTT	alt_1712_missing	85	57	67	42	42	67	71	58	72	49
TGCCCTAAAGCGTTTC	alt_1712_missing	45	32	48	44	46	40	47	33	32	25
GCTTGGCTTAAGCCTG	alt_1712_missing	44	48	51	60	53	41	53	32	40	26
GCACTAAGACGCCAGG	alt_1712_missing	50	52	75	42	55	41	62	57	50	48
AGACACCCTAAATAAC	alt_1712_missing	231	181	234	209	206	171	220	224	242	182
TAACCTGGTAGCCCTA	alt_1712_missing	52	38	47	51	35	41	40	48	56	38
GAGGGAGTTGAAGATG	alt_1712_missing	0	0	0	0	0	0	0	0	0	0
GACCGTTCCAGCTCCA	alt_1712_missing	11	7	19	13	11	15	7	9	6	8
TCGTGGAGGACGGATC	alt_3664_missing	0	0	0	0	0	0	0	0	0	0
CCTACGTAAGAGGCAA	alt_3664_missing	0	0	0	0	0	0	0	0	0	0
ATAGAGTTATGCGCGA	alt_3664_missing	0	0	0	0	0	0	0	0	0	0
TGCACGGCATAGTTGC	alt_3664_missing	5	12	7	4	10	9	11	7	11	2
TCGTCCACTCAGGGTT	alt_3664_missing	0	0	0	0	0	0	0	0	0	0
CTTAGGCCTAGCGTCG	alt_3468_missing	16	13	35	27	11	25	15	18	12	26
ACGGCATCATGGGTTT	alt_3468_missing	200	77	258	240	79	177	98	215	79	193
ATGCTTACTCAGTATT	alt_3468_missing	0	0	0	0	0	0	0	0	0	0
CCTTCCTACCCAAGCG	alt_3468_missing	58	16	73	71	28	73	19	55	39	42
ATCTCAGTGTTGGCCA	alt_139_missing	164	309	225	187	334	176	278	154	305	145
GCATGTTTAGGCTATC	alt_139_missing	2	5	5	7	4	1	6	2	8	3
CTCAGCATTTTGGGTA	alt_139_missing	6	15	10	3	14	4	9	4	8	10
CATCAAAACAAACCTA	alt_139_missing	14	22	25	19	27	18	24	12	26	11
TGCATCAACTGCGAGT	alt_139_missing	13	20	16	10	27	13	20	10	24	14
TCTAAATTGGGCATTG	alt_139_missing	18	41	21	15	37	24	46	19	31	9
CCTAATCGCAAGTCCC	alt_139_missing	10	19	7	11	17	8	23	15	25	9
ATAGGCTGTCATTTGG	alt_139_missing	252	489	305	266	512	273	494	247	534	236
ACGTTTACTGTGAGCT	alt_139_missing	30	43	46	32	52	40	64	26	43	34
GTTCCCGCAAGTTGAA	alt_139_missing	13	27	15	13	31	16	31	12	39	15
TTTCCTTATCCAGGCT	alt_139_missing	0	0	0	0	0	0	0	0	0	0
TGTTCATAGTTTCTGG	alt_139_missing	1	5	4	10	7	4	9	0	12	10
ACTTGCTTACCCTGGG	alt_139_missing	6	18	4	13	12	7	20	7	15	5
TCTTCCTGTGAATTAT	alt_139_missing	31	29	30	21	41	21	32	27	31	18
GTTAGTTTCACTGCGT	alt_139_missing	35	51	38	28	40	28	55	27	44	20
CGTTGGTTTTCCCTTC	alt_139_missing	4	4	7	1	8	5	5	4	7	4
TGCAATTAAAGGCTTT	alt_139_missing	0	0	0	0	0	0	0	0	0	0
AAGGAAGTATATTAGG	alt_139_missing	17	26	18	18	34	26	27	17	39	17
CCGTGGGCTAACTCCA	alt_139_missing	0	0	0	0	0	0	0	0	0	0
ACACTGGGCCTGGTGT	alt_139_missing	19	15	13	12	18	7	14	13	12	14
GCCGGTCCTAAAGTAA	alt_139_missing	17	24	25	13	18	12	26	17	28	12
CTACGACATGAGTCCT	alt_139_missing	6	10	7	4	9	2	6	11	10	3
CCGTGGGCAGCTCATA	alt_139_missing	39	51	47	34	49	31	49	20	58	31
CGCAGATTTAAACGCT	alt_139_missing	18	17	15	7	17	8	15	8	20	15
TCCCGTAGGATCTATA	alt_139_missing	15	22	16	5	15	25	12	5	12	6
GCTTGCGTTGTGTTAG	alt_139_missing	30	48	26	29	43	31	46	28	62	25
TTGAAATCTCTGACGT	alt_139_missing	6	7	12	8	11	5	17	9	9	10
TCAGTGCAACAACGGT	alt_139_missing	6	14	8	10	8	8	14	4	10	7
CACTGTCTGCTACCCA	alt_139_missing	26	26	25	19	28	28	39	15	31	22
TTACATCTTTGTGTAC	alt_139_missing	32	51	35	29	42	24	53	26	46	24
TCGTCACTCGGTAAGT	alt_139_missing	8	12	18	12	19	7	14	12	23	9
GGTATGAAAAGCCAGT	alt_139_missing	9	7	14	6	13	6	17	9	12	13
TTTTCACTCAGGCTCT	alt_139_missing	2	10	6	8	3	4	5	6	4	6
CCCCTGGGCAGTGCGT	alt_139_missing	2	9	7	2	9	7	10	7	17	3
TTTGCATTTTTTTAGA	alt_139_missing	2	16	6	9	8	9	5	5	12	4
GAATGGGATGGTGGCC	alt_139_missing	26	44	38	20	40	28	48	23	36	24
CGCTGCCGTGCTGTCC	alt_139_missing	23	23	12	9	31	17	32	25	27	11
AGGCTCACGTTCTCCA	alt_139_missing	0	0	0	0	0	0	0	0	0	0
GATTTCAGACCATTTA	alt_139_missing	11	11	10	4	9	6	10	8	11	5
TTGTTCAAACCCGTAA	alt_139_missing	100	125	120	113	149	91	172	74	159	78
GGGTCCGCTAAGTTTG	alt_139_missing	17	33	28	11	27	16	16	13	27	9
ATTCATGCTCCCTCAG	alt_139_missing	37	80	55	54	68	34	71	34	79	35
AGGCCTATGTGGCCCG	alt_139_missing	9	8	11	10	17	10	10	16	19	9
CCAGCCCCCTTCTGCT	alt_139_missing	5	16	12	6	15	3	15	3	13	8
CCCGCTTTGTTGCCAT	alt_139_missing	17	27	38	28	34	24	30	16	30	27
CGGCTACTTTGGAATT	alt_139_missing	39	45	46	29	46	32	45	38	41	21
CGCCTCAATTCTTAAC	alt_139_missing	14	15	16	16	16	20	13	20	21	12
GTTTATACGCTAAGCC	alt_139_missing	30	72	41	45	57	39	85	44	72	60
AACCCTATTTGTACAC	alt_139_missing	8	13	18	10	14	7	13	12	23	9
GTCTTCTACCATTTCG	alt_139_missing	0	0	0	0	0	0	0	0	0	0
GATGTCTTTCCTGGTG	alt_139_missing	46	77	57	41	69	47	76	58	87	44
TGGCCAGCGCATGAGC	alt_139_missing	21	32	38	21	32	19	34	21	25	23
GATGCTAGGCAGCATG	alt_139_missing	0	0	0	0	0	0	0	0	0	0
ATCTATCAGCTTCACG	alt_139_missing	64	76	55	47	72	53	87	59	88	47
TCATTGATGCACCCCC	alt_139_missing	2	8	7	5	8	4	4	3	10	4
TCACGGGCCCCGCGAC	alt_139_missing	25	43	30	26	38	15	32	20	45	21
CGCCACAGAATTCCAC	alt_139_missing	0	0	0	0	0	0	0	0	0	0
TTACTAGGTTTTGCTT	alt_139_missing	7	14	21	13	21	9	12	10	21	13
CGAACTTGTTTACTGT	alt_139_missing	6	4	5	3	10	4	5	2	4	8
GAGCTCATCTCGCATC	alt_139_missing	29	50	38	31	38	19	53	35	43	23
AACAGCGAAAGCCTTC	alt_139_missing	0	0	0	0	0	0	0	0	0	0
ATTGGTACTAAGCCCG	alt_139_missing	21	20	17	14	17	7	20	16	28	10
CCTTCATATACTTTGC	alt_139_missing	0	0	0	0	0	0	0	0	0	0
CCATAGTGTTTCATGC	alt_139_missing	31	100	52	28	84	37	100	46	110	41
AGGGCCCGTTTCATGT	alt_139_missing	13	35	19	16	39	20	32	17	43	20
TTCGCTCCCCATGCTC	alt_139_missing	7	45	16	8	63	9	34	11	58	13
TAACAGACACCTCTAA	alt_2148_missing	40	53	53	43	34	42	54	43	46	49
CCTTTTTACAGCCCCG	ref_3077_missing	0	0	0	0	0	0	0	0	0	0
AGCGTGTGCCTATGTA	ref_3077_missing	27	28	34	28	31	21	17	32	38	25
GGCGGCACTCCTGCAA	ref_3077_missing	0	0	0	0	0	0	0	0	0	0
GCGCGGCAATATTTAC	ref_3077_missing	0	0	0	0	0	0	0	0	0	0
CGCTGTTAATCTGTTC	ref_1328_missing	0	0	0	0	0	0	0	0	0	0
TTCAGCGATCGAAGTA	ref_1328_missing	2	4	12	6	10	2	2	4	7	4
GGCATTGCGCTATTCA	ref_1328_missing	0	0	0	0	0	0	0	0	0	0
CAGCAACTACATTTGA	ref_1328_missing	4	6	3	1	5	1	3	1	5	1
CGGTGTCACTGCAGCA	ref_1328_missing	10	9	12	10	8	3	9	10	11	5
GACAATTTTGCCGGAG	ref_1328_missing	0	0	1	0	0	0	0	0	0	0
GAACATTTCCTCTTCG	ref_1328_missing	0	0	0	0	0	0	0	0	0	0
TTCGGCTATTTGTGAC	ref_1328_missing	0	0	0	0	0	0	0	0	0	0
TAGGGCAGTAGAGGGC	ref_1328_missing	4	9	8	5	4	2	4	4	5	7
TATCTTGTAGCTTAGG	ref_1328_missing	0	0	0	0	0	0	0	0	0	0
CACTCGCTCTAAGGAC	ref_1328_missing	0	0	0	0	0	0	0	0	0	0
ATGTATGGTTCCATCT	ref_1328_missing	0	0	0	0	0	0	0	0	0	0
CGTTCGTCGTGGGTGA	ref_1328_missing	6	4	14	4	7	4	9	4	3	9
CATAGCGCTGTGACTC	ref_3340_missing	76	160	98	82	139	67	159	74	159	95
CACCCGCCGGCCTTGC	ref_3340_missing	22	36	19	20	43	19	41	13	41	20
ACGGCCTATCTATTCG	ref_3340_missing	31	55	31	36	42	22	63	37	53	27
TACACCCCTCTCCGCA	ref_342_missing	8	10	13	8	10	6	15	10	10	13
CCTCCACACCCGTGTA	alt_3091_missing	1	1	0	0	3	0	1	1	0	0
ATGCTATTGTGCCATT	alt_3091_missing	6	6	3	1	3	11	2	6	6	4
GGCTCACAAGCTACGG	alt_3091_missing	46	56	37	41	56	37	72	47	62	43
CTATGCATTCCTGCAT	alt_4063_missing	0	0	0	0	0	0	0	0	0	0
AACCACGTACTTTCTA	alt_4063_missing	17	21	21	25	18	21	26	22	23	21
GGGATCTTGTCTAGAA	alt_123_missing	0	0	0	0	0	0	0	0	0	0
ATTCCTGAGTTTAAGC	ref_1712_missing	51	34	54	36	48	26	48	39	51	32
TTTAGAGACAACTACT	ref_1712_missing	0	0	0	0	0	0	0	0	0	0
AATGGATCCAACTTTT	ref_1712_missing	82	105	117	82	114	88	122	74	98	64
TTTTCGTACCAACCTA	ref_1712_missing	82	84	102	79	100	108	76	77	86	62
GGTAGTGCCTCTAGAG	ref_1712_missing	0	0	0	0	0	0	0	0	0	0
TGAACTCATTGCTTAC	ref_1712_missing	0	0	0	0	0	0	0	0	0	0
GGATTTATCGAGGCTC	ref_1712_missing	0	0	0	0	0	0	0	0	0	0
ACTTGACGGCATTCCC	ref_1712_missing	8	10	17	7	13	2	13	18	17	9
GAATGGTTTCGGTCGA	ref_1712_missing	51	78	87	81	89	87	89	84	102	63
AGTGTTCACAAGTTAC	ref_1712_missing	38	68	60	49	70	37	76	36	82	46
CTCCAACTCCGGACAC	ref_1712_missing	9	14	12	17	16	21	14	22	20	15
GGACTTCAGCGGATCG	ref_1712_missing	19	27	23	29	20	21	32	16	26	16
TTTCGGGTCTATAAAC	ref_1712_missing	12	19	28	19	22	14	28	19	20	9
GTGTCATCATTATGTG	ref_1712_missing	35	19	36	28	43	18	31	38	45	32
CCAGTAAAGAACTTGC	ref_1712_missing	18	71	30	34	72	21	87	24	94	17
GTTCCTAGCACATCGG	ref_1712_missing	13	23	21	19	34	29	36	23	30	21
TTCTATCTAGTCTGGA	ref_1712_missing	0	1	3	2	1	3	3	2	1	1
TGGAAGAGAGCTCTCC	ref_1712_missing	0	0	0	0	0	0	0	0	0	0
CCCCGGTCTGGCCAAC	ref_1712_missing	0	0	0	0	0	0	0	0	0	0
GTTCCTTCTGCCCTGA	ref_1712_missing	11	6	20	8	10	16	10	10	19	10
TTTGTTAATACTCTTG	ref_1712_missing	26	27	22	22	26	20	22	17	25	17
AAGTTAGCTGGTACGT	ref_1712_missing	7	5	8	3	5	3	9	3	6	7
TTTATCTGCTTTTACC	ref_1712_missing	31	46	47	24	38	20	42	28	32	29
CTCAAGATCTTCCATT	ref_1712_missing	33	32	41	43	26	28	21	34	47	28
CATTCCTTTCCTAGGT	ref_1712_missing	68	60	65	69	70	50	93	61	88	76
TATGGGGGTTGCGCTT	ref_1712_missing	27	23	51	23	33	30	41	30	42	33
GCAGTGGCTTTGCAAA	ref_3468_missing	0	0	0	0	0	0	0	0	0	0
ACGGAGTTTCTTTGCT	ref_3468_missing	177	85	179	201	88	171	99	159	97	139
ACATCGTCTTTTCGCG	ref_3468_missing	287	170	340	322	166	272	147	317	188	258
TACGTCTCTTCTGCAT	ref_3468_missing	1	8	6	5	5	6	1	1	5	2
ACTTTTGTGCACGGTC	ref_3468_missing	14	9	39	33	7	29	12	23	8	31
TTCTCGTAGGTTATAG	ref_3468_missing	42	20	44	59	22	40	32	27	21	34
TGTCGAAAATGCGCGC	ref_3468_missing	38	12	21	33	7	24	10	27	10	16
GGCTCGCACGATTCAC	alt_1454_reverse	51	50	56	55	41	43	58	46	41	33
TTAATCCGGTCTCAGG	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
TATAGTAACGTACGAG	alt_1454_reverse	78	54	87	84	60	78	70	72	55	83
GGTATATGACTCAACT	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
TCTCTTCAGTGCGGAC	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
ATCTCACCATGAGGTC	alt_1454_reverse	41	32	50	34	29	29	29	37	29	48
AGTGCTTGTTTGCCTT	alt_1454_reverse	26	18	31	25	10	16	19	18	21	20
TGACACTCCTCGGATG	alt_1454_reverse	12	59	11	10	61	10	51	9	76	11
TTGCCGCTAGAGTTCG	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
TGAATGTCGTTGGTGG	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
GCGATCCGTCCACAGA	alt_1454_reverse	90	61	96	103	66	102	89	93	72	93
TAGTGTCGTACCTACT	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
TTGTTTTTACTATATG	alt_1454_reverse	317	275	388	341	301	306	286	272	330	308
CACCGACCTAATCTGA	alt_1454_reverse	30	23	31	19	15	19	22	23	24	19
GGTAGATTGCAGAACT	alt_1454_reverse	42	28	42	33	27	41	29	38	41	38
TTAATAAACCTTGTGA	alt_1454_reverse	30	25	47	21	24	28	18	32	26	37
ATATGATGTGGAATGG	alt_1454_reverse	12	4	4	7	4	3	5	7	4	5
TGCTGACCCATATCTT	alt_1454_reverse	5	4	11	8	7	15	6	5	3	5
TGATACCTCTCAGTTA	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
TCAGTCTGCTACGTGA	alt_1454_reverse	85	92	114	91	113	90	120	71	99	84
TCCGAGTCTAGCCTCA	alt_1454_reverse	136	100	153	124	105	136	98	93	119	116
AGTACGTACCGGTTTT	alt_1454_reverse	31	51	46	37	55	45	57	34	52	19
AGTAACGTTAGAACAA	alt_1454_reverse	20	16	31	28	27	29	23	26	20	22
TAACTTTGTTCAATAA	alt_1454_reverse	26	21	29	16	28	23	24	20	22	15
CGTAATTATGTTACCA	alt_1454_reverse	53	34	58	51	31	51	36	46	41	38
GTGTAAGGCACTAGAG	alt_1454_reverse	225	215	303	272	187	247	212	215	206	212
CACCCTATTTTCAATC	alt_1454_reverse	19	12	12	13	14	16	11	15	12	15
ATCTTAGGATCGGTGC	alt_1454_reverse	55	43	60	56	46	46	42	48	44	57
TTGCATTATTAATGTG	alt_1454_reverse	8	5	4	5	6	5	2	1	4	2
CCTGCCATTACTTGCT	alt_1454_reverse	16	15	9	7	28	9	18	13	29	9
TCATCCGGGTTATCGC	alt_1454_reverse	11	11	12	9	14	14	5	9	12	6
GTTTTCGGCTTCAAAC	alt_1454_reverse	38	33	57	30	43	41	32	39	42	52
GGCCTGAATCAAACCT	alt_1454_reverse	37	35	59	39	32	37	26	40	37	42
TGTCTTACTTGACGCT	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
CCTAGATCCGGCATGA	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
CATGCTCCAACTGCGA	alt_1454_reverse	27	28	23	29	30	19	21	21	19	19
GTAGCTCTAGATTCTT	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
CTTAACGAAACGAGCA	alt_1454_reverse	30	14	26	32	21	22	29	33	27	21
TGCTTGCCGGCTAGAA	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
TTGTGGAGTTCAGTAA	alt_1454_reverse	0	0	0	0	0	0	0	0	0	0
TTTAATACCTACCGAC	alt_1454_reverse	33	64	45	33	72	33	50	32	58	23
AACCGTTCGTGGCCCT	alt_1454_reverse	101	60	57	77	64	65	71	71	77	65
ATAGGTGCGTAACCGG	alt_1648_missing	3	12	13	6	7	9	12	2	15	5
CGATCACCTGTTCTCT	alt_1648_missing	44	86	75	75	101	53	91	33	113	46
CCTTGATGGCTTATCC	alt_1648_missing	8	26	17	11	17	12	25	7	23	7
TAATCGAGCTACCAGT	alt_1648_missing	47	78	57	52	102	46	117	51	83	48
CGTTTGCTACTTATTC	alt_1648_missing	0	0	0	0	0	0	0	0	0	0
AGATTACTGATGAAAA	alt_1648_missing	20	26	23	18	21	19	28	23	20	18
GATGTGTCGTTATGTT	alt_1648_missing	55	107	75	56	80	61	96	61	116	55
CAATGCTATCTATAGT	alt_1648_missing	0	0	0	0	0	0	0	0	0	0
AATAGAAGGTACCCGG	alt_1648_missing	0	0	0	0	0	0	0	0	0	0
GTATTACGGTTGACTA	alt_1648_missing	0	0	0	0	0	0	0	0	0	0
ATGTCTTTGGATCGAA	alt_1648_missing	48	77	51	54	70	41	65	23	77	31
AGTACGGACAAGCGTT	ref_4849_missing	2	2	3	2	1	3	2	4	0	2
TCTTATCTTTCGTACC	ref_4849_missing	0	0	0	0	0	0	0	0	0	0
GTCGAGTCACGGTGCG	alt_5994_new	70	45	95	80	36	67	39	79	42	59
CAATCGCCGCCATCCT	alt_5994_new	36	15	52	34	22	31	22	42	19	27
GCCATGGGACTACGCT	alt_5994_new	216	96	279	237	126	203	104	218	138	171
GCTAATGAGATGTTAG	alt_5994_new	78	52	71	76	44	62	42	55	44	54
CGGTTATTGGAATTGC	alt_5994_new	48	38	62	46	27	56	37	43	33	44
TTTGCCCCATCCGTGA	alt_5994_new	221	83	216	177	81	183	114	166	95	149
GCCATCGAGGGGGCTA	alt_5994_new	0	0	0	0	0	0	0	0	0	0
CTCGCCGCCAACGATA	alt_5994_new	33	18	40	36	24	33	14	37	21	37
CTGCGGCCCCATTTAG	alt_5994_new	38	22	52	50	30	37	25	55	40	41
GTGGGTCACCTGATAC	ref_3747_missing	0	0	0	0	0	0	0	0	0	0
CCCGAGCTAGGGCCGG	ref_3747_missing	0	0	0	0	0	0	0	0	0	0
GTATAGGTAGACCGGC	ref_3747_missing	0	0	0	0	0	0	0	0	0	0
CGCCGGATAGGGCTCA	ref_3747_missing	0	0	0	0	0	0	0	0	0	0
GGCCGTCCGATGAGCA	ref_3747_missing	0	0	0	0	0	0	0	0	0	0
ACGGGATTGTGAGCGC	alt_3980_missing	0	5	1	2	4	4	4	3	4	2
ACATTTCTTGAGGTTA	alt_3980_missing	0	0	0	0	0	0	0	0	0	0
ATGTGCCAGTGTATTA	alt_406_missing	10	15	18	14	18	12	25	9	25	16
GAGTACTATCTCCGTT	alt_406_missing	6	19	8	4	21	7	22	8	17	12
TCTTGCCTGGAGGGCT	alt_406_missing	19	25	26	23	35	20	27	26	24	29
CAGTTTTCTCATGGGG	alt_406_missing	88	126	106	78	132	61	135	90	137	90
GATTCCCGCTTCGGTG	alt_406_missing	30	40	40	39	42	28	48	35	43	37
AGGTAGGGATGTCAAG	alt_406_missing	33	31	30	22	41	26	33	21	27	20
CACGTATCATCTGCTC	alt_406_missing	0	0	0	0	0	0	0	0	0	0
ATTCTATCATAACACG	alt_406_missing	42	33	32	20	33	23	30	24	32	20
TCACCGTGGGCGGGCC	alt_406_missing	1	11	6	4	20	3	14	6	11	3
CACGATTGCCGTCAGA	alt_406_missing	23	25	17	10	21	24	26	16	19	12
GGTTGCGTTTGTGTGG	alt_406_missing	26	27	14	21	28	18	41	24	48	19
GGTCAGTTGGGCTAAG	alt_406_missing	55	100	65	68	80	53	99	59	89	42
GAATGGATAAAAACCG	alt_406_missing	15	4	14	8	13	11	13	11	20	8
CATTACCCTTGGGAGA	alt_406_missing	6	21	13	14	15	12	20	9	22	12
GAAGAAATTTTGCAGG	alt_406_missing	41	49	30	41	43	34	40	34	51	25
CGCTACATTTTACGAT	alt_406_missing	1	2	2	2	3	2	2	2	3	2
TAGATTCATCACTGCT	alt_406_missing	36	34	39	47	43	25	56	27	47	26
ATCTGCCTCTTTGCGT	alt_406_missing	48	67	74	42	78	45	78	57	65	37
CGTTGTGGAGGTACAG	alt_406_missing	39	58	37	55	58	45	66	29	53	43
ACCCGTGTACCTCAGG	alt_406_missing	18	21	21	15	18	17	23	15	32	11
GCGTCCCGGCCCACCT	alt_406_missing	91	141	117	104	125	87	150	73	131	71
GAGCAGTTCTACTCTG	alt_406_missing	122	181	139	123	141	110	148	129	177	103
TGGGTCTATCGCACCC	alt_406_missing	47	40	30	25	43	26	46	23	47	20
CCGGCACGGTCGCGAA	alt_406_missing	0	0	0	0	0	0	0	0	0	0
TTACTCTAGAACAGTT	alt_406_missing	0	0	0	0	0	0	0	0	0	0
AATTTGCTCGGGGTTG	alt_406_missing	5	4	5	5	6	8	5	4	7	3
CCACGTTTTGGCATTG	alt_406_missing	0	0	0	0	0	0	0	0	0	0
ATGGTCATCGGACGCA	alt_406_missing	0	0	0	0	0	0	0	0	0	0
TGCGATTGCACCTGAC	alt_406_missing	29	64	23	32	55	28	63	25	57	34
GTTCCTCTAGGTAGGC	alt_406_missing	88	175	142	99	167	112	164	102	183	107
TGAGGTTCCGTGTTGT	alt_406_missing	5	4	12	11	15	10	18	15	12	7
AATTTAGCGACCACCC	alt_406_missing	91	154	106	103	136	106	139	89	138	94
TTTGGTTGGTAATTAT	alt_406_missing	89	129	103	100	119	94	124	72	142	91
ACACGTCTGTGTGCAT	alt_406_missing	12	14	10	13	13	14	17	8	11	10
ACAGCCCAAATTGCAT	alt_406_missing	1	0	3	3	1	1	4	1	1	2
AGATTCGGTCTCTCCA	alt_406_missing	0	0	0	0	0	0	0	0	0	0
CCGGGGCTTAACGTGA	alt_406_missing	18	24	19	20	17	14	40	18	21	19
ACTGTTGGACAGGTCA	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TGTAAAATACAGGATT	ref_5895_new	19	9	20	24	7	20	11	11	6	15
AACTACCGGATGGGCG	ref_5895_new	8	8	17	13	9	11	9	13	11	16
TGTAAACTGACTGGTT	ref_5895_new	25	17	35	39	15	27	14	22	12	23
TGTTACTCTCGGACAT	ref_5895_new	1	2	4	6	9	2	6	6	5	9
TATGGAGCCAACGGTT	ref_5895_new	10	22	34	26	26	29	32	22	18	16
GCCTCCCAGGAGTCCA	ref_5895_new	2	0	4	0	0	3	1	3	4	2
TAGCCTTAGAAAACCT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CTTGTCATGTTATCGT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
GAGGTCATTTGCGAAT	ref_5895_new	7	7	5	4	2	6	3	3	4	4
CCGTCAAAGACCGCAT	ref_5895_new	37	93	45	34	107	49	101	31	115	41
GCCCTAAAAAATGCTT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CTAGCAGGCTTAAGTT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CTGTCCGATAAATTTA	ref_5895_new	10	3	8	10	5	3	5	12	8	11
TAGTAGTAATGTGCAT	ref_5895_new	36	31	53	41	27	32	28	38	26	31
GGCTCGTCTTAATGTT	ref_5895_new	120	80	145	102	99	106	94	121	67	104
CGGGCTGCTAACAACA	ref_5895_new	9	4	10	6	9	12	6	10	5	9
GAGTGCAGCGAACGCC	ref_5895_new	15	22	41	42	29	30	15	20	20	24
AGAATCGTTCGTTGGG	ref_5895_new	59	31	75	68	40	39	39	64	43	47
ACTCCGCACACGTGAC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TGCAATTAGTCTTAAC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
GCGGCGGCTCTATCCT	ref_5895_new	161	82	164	183	77	162	107	136	94	131
CGTCTCCGGAAATGTT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
GCCGACACCTATAGTT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CGTTAGGCGTCTCTAC	ref_5895_new	8	6	8	9	2	3	6	3	6	5
TAGATACTGTCTTCTT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
GCATATGTTACATATT	ref_5895_new	69	45	84	73	54	64	46	70	52	62
TTGTGATTGTCCAACC	ref_5895_new	11	12	18	18	8	9	12	13	24	15
GACATGGGTTGAGTAT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
GCTATCTCGCATGTTG	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TGTAGGGCCGAAAATA	ref_5895_new	134	82	142	124	52	99	66	98	84	107
GCGCCTTGGCTTGACA	ref_5895_new	46	27	66	51	27	52	32	44	32	39
CGCATTCTTCGATACA	ref_5895_new	183	110	242	224	91	139	106	159	112	165
TGCCTCCTTGCCCGGC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CGGACTCCGAATGCCG	ref_5895_new	82	54	89	61	62	73	55	65	59	63
ATAAGTAAATAAGGGT	ref_5895_new	79	54	103	84	45	89	33	77	50	76
GTAACCCCCTGCAGTA	ref_5895_new	18	17	4	7	19	3	18	9	21	10
TTCGAATGTCCCTCCC	ref_5895_new	23	26	50	57	27	38	27	39	27	42
CTAATGCAATTGCACT	ref_5895_new	67	38	73	68	47	52	47	53	66	61
TCCGTAGTGTTGACCT	ref_5895_new	21	10	10	40	20	15	9	15	23	21
GTTCAAGCCTTGATCC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CAGATCTCCAGTTTGT	ref_5895_new	19	22	27	28	10	26	17	27	14	19
TGAGCGGTTGGTGCCT	ref_5895_new	20	14	21	22	18	31	8	40	19	13
CGCGAGGCCATTTCCG	ref_5895_new	133	90	154	144	97	132	74	159	91	96
ATTTTTATGCGAACTC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CCGGCCATACTGGTGG	ref_5895_new	0	0	0	0	0	0	0	0	0	0
ACAGCACCTTCTTAAC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
AATTTGTCATGCCTTT	ref_5895_new	46	24	57	50	21	41	19	44	24	40
CTCTACTGATCCATCC	ref_5895_new	117	68	156	137	74	119	71	122	73	105
TGTGGAATACTTGCCC	ref_5895_new	109	69	149	138	81	110	80	111	96	105
TGTTACTCCCTTCGTG	ref_5895_new	0	0	0	0	0	0	0	0	0	0
ATGTTGTGCAATTTCC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
AATATCCTATTTAAGG	ref_5895_new	91	42	100	100	38	80	63	78	51	77
TTTGTGCGACACCGCC	ref_5895_new	45	38	78	76	31	60	41	64	36	62
AGTTATGTTGTGATGA	ref_5895_new	13	14	12	11	6	17	18	10	15	12
TCGAGCCTAGGGAACG	ref_5895_new	68	69	100	78	64	77	64	76	78	58
CTTTACTACTCTCTCG	ref_5895_new	48	15	54	55	27	53	39	41	32	47
TTCGGTTGCTTACTAA	ref_5895_new	80	50	107	88	43	70	45	74	42	49
CCCGTTTTGTCCTGTT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TGTAAACTTCTTTAAG	ref_5895_new	0	0	0	0	0	0	0	0	0	0
ATTAATTCGGTTTTAG	ref_5895_new	97	48	101	85	45	74	41	69	56	59
GAGTCTCGGAGCGGAG	ref_5895_new	53	38	67	72	40	71	41	77	57	58
ACTTCTACATTCGACG	ref_5895_new	0	2	5	6	1	6	4	2	3	0
TCACTGAATTTTGCAC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CAGGCGTGCTTGATCT	ref_5895_new	79	27	88	61	46	64	56	51	50	54
CTTGTACCGCTCTTCA	ref_5895_new	33	16	34	41	20	26	19	34	20	36
GGCTCTCTTGTTTCAC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
AGCGTAACTATCGAGT	ref_5895_new	10	15	29	24	19	29	10	24	17	6
TATGGTTATTTCCGAT	ref_5895_new	29	19	28	21	9	30	14	24	20	18
CTTTTTGTCACTTCCA	ref_5895_new	15	13	14	12	8	6	12	21	10	14
GTTCTCATTGACGCCG	ref_5895_new	10	9	11	7	4	8	3	2	8	7
TTGTGCTTTCTCTTTG	ref_5895_new	77	54	146	106	67	83	44	101	34	69
GGCAGTGCCCTTAGCA	ref_5895_new	22	16	27	25	8	12	11	20	16	12
TGTGTCCTTTAATTAC	ref_5895_new	56	32	64	41	43	52	30	42	38	41
CTTCCGTCAGGCCGAT	ref_5895_new	42	18	45	42	24	43	22	27	26	22
GCCAATGACTTTCGCA	ref_5895_new	46	36	48	47	26	42	21	47	29	46
GATTATATTATAATCG	ref_5895_new	40	26	57	53	35	37	22	40	21	45
AAGGTGATATCTGCAC	ref_5895_new	75	37	91	83	36	70	51	89	49	64
TTAAGGGGACGACTCT	ref_5895_new	72	47	103	95	42	75	43	71	27	45
TTTATAGCATGTGATA	ref_5895_new	42	26	50	53	24	39	22	36	29	36
CTTGTGGAATGCCCGC	ref_5895_new	6	8	14	10	7	8	5	18	7	10
GCTCAAAGAAAAAGGT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
GAACGCTAGCGTATGA	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TTGTGCGCTGTGTGGG	ref_5895_new	0	0	0	0	0	0	0	0	0	0
AGGCGTCAATGGTCTG	ref_5895_new	19	7	21	15	8	17	11	10	8	7
ACAAGGTGATGATAAG	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TGTGCTGTTTTTATGC	ref_5895_new	10	3	16	16	4	15	9	10	3	13
ATGATTCCTCTTATGT	ref_5895_new	30	20	47	36	12	29	17	39	25	32
TATTGGCGTGCGCCAC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TTCATCGTCACAATGC	ref_5895_new	149	91	212	174	96	132	97	149	115	145
CAAAGGCTCTGATTAA	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CTTACGCTTATAATTC	ref_5895_new	39	24	46	37	28	32	24	37	21	26
GGTCCTGGTACCCGGC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CATTCGCGTTCTTAAT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CCATATAATTCTACTA	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CTTACGCTTGACAGTT	ref_5895_new	22	6	13	15	7	17	16	17	22	18
GAGGTGTATTCGCCTG	ref_5895_new	9	4	4	7	3	6	6	4	5	3
CGGGTCAGCTCTCCCC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
ACTGTTCATTTGTCAG	ref_5895_new	8	4	15	12	7	14	8	18	9	7
TGCTGGGATTCTCTCG	ref_5895_new	44	28	47	41	14	19	24	24	30	31
TTAGCATACGAGCATA	ref_5895_new	0	0	0	0	0	0	0	0	0	0
ATTAAGACTCCTCTTC	ref_5895_new	88	47	94	112	65	69	53	83	49	92
AGCTTTAGTACGTCAC	ref_5895_new	57	35	97	77	23	57	42	52	40	49
TCAGCTGGTATACCCC	ref_5895_new	0	0	0	0	0	0	0	0	0	0
TCTCCAGGGGTAATAC	ref_5895_new	16	8	15	17	3	10	7	9	10	2
TTTGAAAACTCATTTT	ref_5895_new	70	41	80	75	40	65	47	53	37	51
TCTCCTAGCAAGTAAT	ref_5895_new	74	37	102	66	41	85	39	79	46	71
ATTCCTTACCATGCGA	ref_5895_new	28	22	42	32	18	27	17	28	15	30
CTCTTCAGAAAACGTC	ref_5895_new	62	32	61	71	41	55	43	80	39	48
TAGTGGGTGGATTCAT	ref_5895_new	104	56	156	129	65	100	58	104	89	85
CCTGGGGTTTTTCAAA	ref_5895_new	16	9	23	16	8	12	8	15	8	13
GACGATCCTTTTCTTG	ref_5895_new	26	14	31	30	14	21	12	30	14	28
CCTCTTACACTTTTAG	ref_5895_new	0	0	0	0	0	0	0	0	0	0
GATTGCCTGCATCTGC	ref_5895_new	24	11	28	30	18	23	15	23	21	27
ACCGGTTCACCCGATA	ref_5895_new	0	10	6	2	14	5	8	5	14	0
GCTAGAGTTCTGGTAG	ref_5895_new	9	8	18	16	8	12	5	14	9	8
ATGTCAGTACATGAAA	ref_5895_new	20	8	14	14	11	19	12	15	15	13
AGAGCGACACTCCCCG	ref_5895_new	2	21	2	1	15	4	22	0	23	2
GTTTTCCGCTCATAAT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CGTCCAGTGTTTAATC	ref_5895_new	29	41	29	29	36	31	58	25	51	41
CCGATTCTTGTTGTTG	ref_5895_new	5	2	3	8	3	2	3	7	0	6
GTTTACATGTGCACTA	ref_5895_new	29	26	31	33	11	35	34	28	20	34
GTCCGCGGCTTCCGAT	ref_5895_new	30	16	47	26	22	31	15	26	28	46
GTTCCTAGCTCTCCAT	ref_5895_new	5	2	3	7	2	4	4	2	5	4
AATTATGGTGGGTTTT	ref_5895_new	79	45	97	99	46	89	49	103	43	96
TGTTGTCTTGGATCCT	ref_5895_new	11	2	17	16	4	17	8	8	7	9
TTGACGCACCGTTACT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
CCCTATTGGTTCCGTA	ref_5895_new	63	41	93	75	50	77	52	67	67	74
GAATTATATGGTCGCT	ref_5895_new	0	0	0	0	0	0	0	0	0	0
AGGCCACCACCGGTTT	ref_5895_new	83	42	123	118	59	65	64	97	61	93
ACACGCAGTGGTCCCC	ref_5895_new	38	18	43	49	37	41	27	46	22	45
CGTTAAATAATTGTGA	ref_5895_new	11	4	8	14	10	12	10	14	6	11
TCGTTAAGGTGTACGT	ref_5895_new	99	66	91	97	70	96	69	98	77	88
ACTTCCCTGTGCCCCA	ref_5895_new	130	48	146	151	72	100	82	94	69	100
TTGGTCCGAGGCTGCA	ref_5895_new	56	40	74	104	38	67	36	83	55	53
CACATCTTAGCCGCGC	ref_5895_new	90	74	106	94	99	95	61	104	97	107
TCCCACTCGATCTTGC	ref_5895_new	2	12	5	2	7	1	15	2	11	6
TTACGCGGGACTCTAC	ref_5895_new	40	26	49	41	24	40	28	32	28	44
CCCCGCTGTTCCGCCC	ref_5369_missing	1	4	4	4	9	6	7	6	14	6
TCGAGAGTTCCTTTCC	ref_5369_missing	32	48	37	24	31	37	35	28	57	23
GCTCTTAACGTGGTGA	ref_5369_missing	37	73	53	37	64	39	66	35	63	30
TTTCGATACCAATGCT	ref_5369_missing	41	70	64	70	71	67	83	63	90	50
CCACTCGCAATTCATT	ref_5369_missing	9	24	14	17	19	8	19	11	33	12
GTGTGGCTAGCAACCC	ref_5369_missing	129	171	146	118	192	111	178	98	227	117
AGAGCAGCAGCCTTAA	ref_5369_missing	121	126	152	122	156	116	137	115	140	100
CAGCTCAAGTGGCGAA	ref_5369_missing	34	54	43	52	71	36	56	45	60	34
CATAGCATTGCGTCGG	ref_5369_missing	36	36	36	30	36	34	37	32	40	32
CTCGATGAGTCGGCAG	ref_5369_missing	49	41	50	38	55	40	39	45	54	24
CGTGAGATTGTGCGTA	ref_5369_missing	58	132	101	72	113	80	146	81	133	74
GCTGACGTTGTTCACC	ref_5369_missing	160	271	182	168	272	137	249	165	267	125
CGCTATGGGTAAACTC	ref_5369_missing	48	70	60	55	79	46	67	48	83	60
CCGTCTATGCGGCATC	ref_5369_missing	4	23	2	1	20	1	22	6	23	1
CGGCAAGCTTTGTTCT	ref_5369_missing	50	70	74	57	74	51	75	43	85	61
TGATGATTAGGTGCGG	ref_5369_missing	32	40	47	30	39	27	33	22	34	26
AAGTACATGTCATCAT	ref_5369_missing	102	141	138	98	125	133	136	117	105	99
CTGCGTTTAATGTTAT	ref_5369_missing	12	24	29	16	26	18	21	21	25	15
TGAATTCGCGGATTGA	ref_5369_missing	0	0	0	0	0	0	0	0	0	0
GAAGGCGGGTGGTGTT	ref_5369_missing	0	0	0	0	0	0	0	0	0	0
TTGGTTTGTACTCGCC	ref_5369_missing	149	192	159	150	144	154	195	103	199	116
ATTAAGGGGATTTTCA	ref_5369_missing	219	265	222	223	237	236	228	197	250	199
GGACACTCGCGTAGTG	ref_5369_missing	4	6	7	3	10	8	14	3	8	1
AACCGAGCCTCCCCCA	ref_5369_missing	57	47	65	61	55	53	49	50	58	49
AGAGTATCTCGCAGAC	ref_5369_missing	71	108	134	91	127	101	119	85	124	77
CAGGGAAGCCCCAGCG	ref_5369_missing	27	40	35	34	43	41	50	21	42	32
TGAGATATTACCCTCC	ref_5369_missing	41	70	65	37	69	49	76	54	82	35
TGAATCGAAGCTCCGA	ref_5369_missing	34	30	40	25	38	23	31	24	42	23
TTTTTATCGGCCCCTC	ref_5369_missing	113	152	150	114	123	110	151	88	135	104
GCGATTCCTAGAGTGC	ref_5369_missing	51	45	46	35	75	37	65	43	73	22
AAATTTTGGTTACCGA	ref_5369_missing	92	117	106	93	127	75	121	86	124	83
GATTTCAGTCCGCCAG	ref_5369_missing	0	0	0	0	0	0	0	0	0	0
TTATTTACTGCTTGTT	ref_5369_missing	17	38	25	30	40	21	42	18	40	29
GCACGGAACAAAAGAT	ref_5369_missing	23	27	26	30	36	16	34	22	36	21
CTTATCGGAGTAGAGT	ref_5369_missing	0	0	0	0	0	0	0	0	0	0
TGTAGTTAAAGCGGAA	ref_5369_missing	78	77	95	72	126	74	65	64	77	56
TGTACCTATTAATGTA	ref_5369_missing	0	0	0	0	0	0	0	0	0	0
CGCAAGCCTGTAATAG	ref_5369_missing	47	70	52	36	65	46	60	36	73	41
TCGGTTTAGTCGGACC	ref_5369_missing	44	55	52	42	55	49	75	35	70	33
CAAACGTATGGCCGAG	ref_5369_missing	79	111	102	81	86	84	126	72	127	74
CTATTACTTCGGAATG	ref_5369_missing	9	22	11	15	24	11	16	8	26	6
TGTAATGTCTTACATA	ref_5369_missing	21	21	20	18	18	20	27	13	24	12
AGGGTCTTAACCGACC	ref_5369_missing	34	34	51	31	44	37	39	21	44	35
CGTACTCGGCGTACTC	ref_5369_missing	21	27	30	18	31	13	25	10	31	16
TCACGCCCTATTTGGA	ref_5369_missing	0	0	0	0	0	0	0	0	0	0
CATGGTCGGTCACTTT	ref_5369_missing	35	32	44	26	43	33	39	32	51	27
CCTTCGTTTCTCTGGT	alt_2025_missing	8	9	10	12	6	9	11	11	11	14
GGGCCTATGTATAGTG	ref_5224_missing	76	78	82	90	79	84	101	65	81	80
GTACGGTGCACTTGGC	ref_5224_missing	36	19	35	25	30	34	31	36	36	23
TTTGATGGTTTGTAAA	ref_5224_missing	227	201	275	183	195	198	219	192	224	177
GGTATGTCGGAAACCT	ref_5224_missing	27	21	44	40	36	39	36	32	30	31
CCTTCTGATTCATTAC	ref_5224_missing	0	0	0	0	0	1	0	0	0	0
ATTGCAAGTCAGTGTC	ref_5224_missing	0	0	0	0	0	0	0	0	0	0
TCGTCACTCGCTAGTC	ref_5224_missing	4	17	17	6	8	9	14	11	6	9
GACTTCTTCGTCCGTT	ref_5224_missing	127	106	132	133	120	119	102	118	109	110
ACATTGTGTAGCCGAC	ref_5224_missing	0	0	0	0	0	0	0	0	0	0
GGTGGACTCAAGATTA	ref_5224_missing	51	38	45	33	32	32	27	30	24	25
CACTTGTCCTGCCCAC	ref_5224_missing	0	0	0	0	0	0	0	0	0	0
GCTCGCATTGATTATC	ref_5224_missing	13	16	19	19	16	15	10	12	22	21
CACTCGTGCCATAAGT	ref_5224_missing	65	78	86	85	97	71	93	86	101	68
CGTTCCTCTCTTTTCT	ref_5224_missing	23	9	23	29	13	15	18	19	14	15
AGGTGCCACTGCGGGT	alt_345_missing	0	0	1	0	2	0	1	1	2	2
CCCATTGTGGAATCCA	alt_345_missing	0	0	0	0	0	0	0	0	0	0
GGATATTGATGCCAAT	ref_3254_missing	50	64	40	41	75	31	67	37	81	42
GATCTCATTGATGCTG	ref_3254_missing	49	107	65	65	84	64	94	77	36	61
TTAGTTAGTCAAGGCT	ref_3254_missing	30	51	52	38	68	40	70	34	76	33
TTCTGTCATTCTGATC	ref_3254_missing	40	40	29	38	43	22	42	32	48	35
GCCTCTGACTGGCTCT	ref_3254_missing	64	115	73	63	141	44	112	72	103	62
AACCTGAGTTAAGCGG	ref_3254_missing	0	0	0	0	0	0	0	0	0	0
ACGTCCCAGACGTTTT	ref_3254_missing	0	0	0	0	0	0	0	0	0	0
CCTCGACCTCTTCTGC	ref_3254_missing	46	61	57	59	62	52	70	57	122	51
CATTATTCATGTTCGG	ref_3254_missing	150	198	174	152	259	152	213	134	213	129
ATATGCATGCGTGTAT	ref_3254_missing	50	81	47	47	77	37	71	31	86	35
GCCAGTTTGCATTACT	alt_5224_missing	4	6	2	6	3	3	5	3	4	5
TGGTAGGAAGTTCTTA	alt_5224_missing	26	21	25	21	24	21	21	27	24	24
CCTTAAATTCGGCTGG	alt_5224_missing	6	5	7	4	12	7	5	6	7	6
TCGTATTCTATTATCT	alt_5224_missing	23	26	25	32	28	16	34	20	19	15
TTATCTGCCGCCTTTC	alt_5224_missing	138	138	198	156	168	131	143	146	137	134
CTTTTGAAGCCCTTTG	alt_5224_missing	21	23	37	25	26	16	34	17	34	32
CCACTGGAATAGTTCG	alt_5224_missing	16	39	19	19	46	19	44	21	54	19
GGGCGGCACTACCTTG	alt_5224_missing	0	0	0	0	0	0	0	0	1	0
TGGGCCAGGTCTGTCT	alt_5224_missing	43	60	73	47	63	44	64	47	69	53
CCCTAAACATCGGATA	alt_5224_missing	0	0	0	0	0	0	0	0	0	0
GGGGTCTTGAGGGTCG	alt_5224_missing	19	12	17	10	12	22	18	20	12	17
GCTATCTATTTAGTTA	alt_5224_missing	80	70	82	58	77	78	61	54	86	55
GACTATGACAGACGTC	alt_5224_missing	14	19	17	17	20	23	19	15	16	22
CATACACAGTCAGTTG	alt_5224_missing	0	0	0	0	0	0	0	0	0	0
TGTTCCTGGTCCGTAT	alt_5224_missing	3	9	10	4	4	5	5	4	1	2
GCGTTTATTGGGAAGG	alt_5224_missing	23	8	19	27	12	20	16	13	19	19
CGTCTTATTCGCTCGT	alt_5224_missing	6	7	12	16	9	3	13	7	7	5
TCATATTAGGGTAGCA	alt_5224_missing	4	9	7	22	8	7	4	7	11	3
TCTCTCAGTCGGAGGC	alt_5224_missing	7	4	4	3	1	4	3	1	7	4
TCATCTCTTCATGGTC	alt_5224_missing	0	0	0	0	0	0	0	0	0	0
TTGAGCTTTATAATCT	alt_692_missing	108	127	129	134	162	93	145	114	142	103
GCATTCAGCTCAGGCT	ref_2157_missing	29	13	22	23	21	20	24	24	27	24
TCCTGGCTCTCAATTC	ref_2157_missing	11	14	13	21	20	11	9	15	25	14
ATGCTAGACACTACCC	ref_2157_missing	4	18	2	8	25	3	22	3	29	0
GGTAATGTTACGCTTA	ref_2157_missing	17	28	24	20	16	19	26	17	18	19
GAAACTTTGAGCGAGT	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
CCACGCCATCTGCGTA	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
ACCATTTGATGCACAA	ref_2157_missing	49	64	65	50	65	41	71	41	56	39
GTCTGTACTTTTTGTT	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
ACCTTTCATTTTGCTT	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
CACGCTACAAACTTTA	ref_2157_missing	158	166	186	150	134	161	165	136	188	155
CTTCACCTTATCGGGA	ref_2157_missing	25	19	30	34	23	22	22	22	13	9
TGGGTTCTTGACACGA	ref_2157_missing	61	32	61	46	50	47	35	52	53	33
TACTTTTAGGTCGATA	ref_2157_missing	29	31	28	19	31	25	29	24	33	25
CCTTTCGTATTCGTTG	ref_2157_missing	34	41	39	38	37	35	46	23	36	25
GGTTCAGCCAATTCCC	ref_2157_missing	8	6	13	3	9	7	4	0	10	7
ATGTCAAATATACCGA	ref_2157_missing	34	56	51	30	45	28	38	38	45	33
CTCAGTGAATAGGGAT	ref_2157_missing	16	27	15	17	10	22	19	13	24	7
CGTACCCGTCTCTATC	ref_2157_missing	42	60	62	51	63	62	75	50	67	41
TTTTCCAGGTACGATC	ref_2157_missing	2	4	5	0	5	3	3	3	5	5
TAGCGATGCGGGTTGA	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
TCTAGATTCTCTGTCG	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
TAGCCTTTATCTAGAA	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
AGTGACTTGCGCATGT	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
ATCTCGTCGGAATCGC	ref_2157_missing	34	25	25	30	34	29	30	25	27	29
TTTCGTACGTTGTGAG	ref_2157_missing	33	47	38	42	55	35	46	36	44	32
TCAGTTGATTTAATTA	ref_2157_missing	13	9	13	17	16	16	19	14	21	16
TCAGCCCGGATTAGAA	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
TTCTCGAGTTATCATG	ref_2157_missing	41	52	58	43	58	33	61	47	61	40
GGGGCCATCAAAATCT	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
ATCGTGTATTATATTT	alt_2157_missing	66	75	102	75	57	79	83	58	87	62
TGATGGCTTGGACCCT	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
CGGCCAGCCTTGGAGG	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
CGCTGAGAGCGTTTCG	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
TCATAACAGACTCTGG	ref_2157_missing	0	0	0	0	0	0	0	0	0	0
TGATTGAATAGGTGTA	ref_2157_missing	9	3	14	14	9	9	14	8	9	5
GGGGAATGGATCAACC	ref_4012_fdr	82	35	100	99	56	82	53	74	40	91
AACTGGGGTTAGGTGC	ref_4012_fdr	224	114	318	239	125	221	107	230	112	208
TGGTGCCTGATTCAGT	ref_4012_fdr	0	0	0	0	0	0	0	0	0	0
ATTGTCCTACGGCACT	ref_4012_fdr	11	7	12	19	2	8	3	12	2	14
AGGCGTCTTCTCGTTC	ref_4012_fdr	31	9	31	34	15	27	15	31	8	25
AAGTGGAGCTTTTAGG	ref_4012_fdr	0	0	0	0	0	0	0	0	0	0
CGTCGCGGCGGTAGAG	ref_4012_fdr	10	1	11	8	4	10	7	9	9	2
GTTGTGGCTGCTAGGA	ref_4012_fdr	0	0	0	0	0	0	0	0	0	0
CTCTATACAATCTTCT	ref_4012_fdr	0	0	0	0	0	0	0	0	0	0
TCCAGCAATCTTCCTG	ref_4012_fdr	116	50	163	137	58	118	87	98	81	104
CGGTTCAGGTAACTGT	ref_4012_fdr	52	26	47	43	23	39	23	31	16	42
CATGCATCCAAGTGTG	ref_4012_fdr	90	40	89	89	42	70	54	72	48	69
GTCTATCCTTTCCTGA	ref_4012_fdr	28	5	26	22	4	22	9	19	9	21
GGTTCTCCTTTCCGGT	ref_4012_fdr	13	6	10	6	11	9	14	10	7	10
CGCATTGTTATGGACA	ref_4012_fdr	133	78	168	142	60	133	69	115	68	92
TCCTTTCGATTTCCTA	ref_4012_fdr	18	13	19	12	7	14	2	9	3	17
GCTATGGTCATCCGTA	ref_4012_fdr	19	7	17	23	11	24	4	18	11	17
GTCGAAATTGGTTGTA	ref_4012_fdr	70	27	54	58	38	47	20	42	41	52
TGGCGAGGGGTTTGGT	alt_5558_missing	0	0	0	0	0	0	0	0	0	0
GCCAGATTATTCCTAT	alt_5558_missing	11	25	18	12	23	10	19	13	24	14
CTTGGCTTCCTGTTTT	alt_5558_missing	3	3	3	2	9	5	7	2	5	7
CCTAGGTTATTCTCTC	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
AACTGATTATGCACTT	alt_2157_missing	54	51	51	30	66	46	70	46	74	44
GTTAATTCGTGTCTAA	alt_2157_missing	17	25	20	19	38	24	29	25	32	19
AGCGCCAGTAACTTCT	alt_2157_missing	16	15	23	20	17	18	21	17	26	14
CCTGTCCTGTTCACGG	alt_2157_missing	21	30	19	11	29	9	31	28	36	12
TGGATAAGCGTCCCCA	alt_2157_missing	49	63	56	33	61	32	56	44	49	35
CGGGATGCCTTATGTC	alt_2157_missing	14	37	21	17	23	7	28	8	33	8
CTATGCGTTTTAACCC	alt_2157_missing	86	87	85	68	91	62	88	69	121	68
TCGTACTGACCACGCA	alt_2157_missing	5	6	4	2	3	5	6	6	1	8
TATCTCGCTACTTCAT	alt_2157_missing	13	9	11	12	14	12	17	23	14	13
GGTTCGCTGTGTCTCG	alt_2157_missing	77	105	101	73	76	60	85	82	104	76
ATCATCAGTCGGTTTA	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
CACATTCAATGGGGGT	alt_2157_missing	8	4	6	5	5	6	7	3	9	8
CAGGGGCCGTAACAGG	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
GACCATGACCGGCATG	alt_2157_missing	23	35	32	23	36	22	25	26	39	14
CACGCCATGCACCAAT	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
AGGCCCCGCATCTGTT	alt_2157_missing	43	45	61	46	42	44	33	32	30	38
CAGTGCTTCTTAAAAG	alt_2157_missing	8	14	6	8	11	5	11	8	7	3
AGTGTTAATATCATCC	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
TTGTGTTGTGCCTACT	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
ACGACAGACAATTTGG	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
AAGACGCCCTCAACCC	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
GGGAATGGGTACTTCA	alt_2157_missing	49	41	61	46	58	49	53	56	47	51
GACTGATTCTAAGTCC	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
TTACGGACGAAGTCTT	alt_2157_missing	19	40	40	31	44	40	27	34	33	29
CTGATGATATTGAGCC	alt_2157_missing	0	0	0	0	0	0	0	0	0	0
CTAGCGCTCATTAGGA	alt_2157_missing	5	14	7	4	9	5	11	2	11	3
TCGCGTGATTATCCTG	alt_2157_missing	15	18	24	14	17	9	17	8	18	16
GAGGGTGAACGGACAT	alt_2157_missing	19	25	32	20	16	21	22	17	18	21
ACTTGAGCTTCGCTTC	alt_2157_missing	204	250	232	244	260	212	286	195	247	166
TGGGGGCCATAAGCTC	alt_2157_missing	108	133	146	141	136	112	127	106	126	121
TTTTGCCCCGTTTCAT	alt_2157_missing	26	27	31	28	27	25	33	24	33	24
TGGCAAGATCGAACAC	ref_2546_missing	0	0	0	0	0	0	0	0	0	0
TGGGCATCGTATGCAT	ref_2546_missing	4	9	6	8	7	3	6	3	9	4
GGATGCCCGTTCGTTT	ref_2546_missing	0	0	0	0	0	0	0	0	0	0
TGAACGTAGCGGTTGC	ref_4515_missing	0	0	0	0	0	0	0	0	0	0
ACTTCGGGTATTCCGG	alt_4876_missing	187	153	233	208	207	209	180	175	182	160
CTTTCTGGCGTTAATC	alt_4876_missing	42	24	31	33	20	29	32	40	26	31
CGCGATCAGACTCGTA	alt_4876_missing	366	300	449	387	294	392	312	349	345	309
TTCTGTTTTAGGTATC	alt_4876_missing	224	162	295	242	170	191	186	221	174	216
ATGGATAGTTTCAGTT	alt_1328_missing	19	13	21	9	26	20	19	13	22	17
TCGTTTTGTGCGGCCA	alt_1328_missing	1	0	3	2	2	0	1	0	0	1
TTCTTCAAGCCGTTAC	alt_1328_missing	8	6	6	4	2	1	6	3	8	3
ATGGCACAGTGGAATT	alt_1328_missing	0	0	0	0	0	0	0	0	0	0
TACAAGGCCGTGAAAA	alt_1328_missing	1	2	5	3	6	1	2	6	5	1
AGCGCCTATCCTGCAC	alt_1328_missing	12	12	8	15	12	9	21	8	13	7
GATTGCATCACGCTGG	alt_1328_missing	8	9	17	10	9	8	8	10	9	10
GCGCGTCGGGGTATAT	alt_1328_missing	5	5	10	5	4	5	5	3	6	3
CTGCCTGGCCGTTCCC	alt_5980_new	24	6	21	28	4	24	7	24	7	11
ATCAGGCATGGTATAC	alt_5980_new	220	65	221	247	61	210	78	235	72	204
TGGGTTAGGAGTCAAT	alt_5980_new	518	128	638	506	148	479	157	523	180	415
CCTGCGCGAGCTTCAC	alt_5980_new	0	0	0	0	0	0	0	0	0	0
CTGGTAATCGAGTTTT	alt_5980_new	385	160	498	483	145	376	177	402	171	366
GCTCATCTTACATTTT	alt_5980_new	97	22	145	117	24	93	26	108	28	92
CGTTAGTGGTACACAT	alt_5980_new	294	166	357	328	137	240	131	279	130	289
TTGCAGGTCCTCTAAA	alt_5980_new	996	313	1111	863	333	792	330	805	349	812
CGAGAATCAGCCATGC	alt_5980_new	35	68	42	44	59	36	71	28	47	27
CTACCCAGTAGCTCAC	alt_5980_new	116	58	149	142	89	114	65	137	72	98
TTTATCCATTCTGAAT	alt_5980_new	0	0	0	0	0	0	0	0	0	0
CGTGACTACCCCCACT	alt_5980_new	12	2	23	22	7	17	4	19	9	15
GTTGCCCTATTTCCGT	alt_5980_new	81	23	89	105	18	105	37	58	22	84
TATATTCAATTTTACG	alt_5980_new	229	58	308	264	62	240	64	248	63	226
GCCACCGTTTCTGGTC	alt_5980_new	61	19	78	57	28	46	23	63	34	46
GTTCTTTACCCTCTGC	alt_5980_new	44	16	74	62	10	56	17	53	21	53
TATACTCAAACGACTC	alt_5980_new	0	0	0	1	0	0	0	0	0	1
CGTGGTTATTAGTGCC	alt_5980_new	197	52	229	227	50	197	71	187	54	179
GACCGCTTTGGCCGGT	alt_5980_new	358	100	440	355	103	333	116	343	133	294
CAGATTCTGCAGTAAT	alt_5980_new	51	14	54	71	16	58	22	45	9	52
TTCGGAATTGCGAGTT	alt_5980_new	26	12	51	43	15	46	13	43	10	38
CTGTGGAAGTCTCGAC	alt_5980_new	533	175	668	596	153	550	194	533	206	426
ATATCTAAGTTCAATA	alt_5980_new	883	230	1069	854	266	766	275	798	284	741
CACTCGCGTCTACACT	ref_3984_missing	3	2	6	2	8	0	2	3	6	3
TTTCCTGATATTTCGT	ref_3984_missing	40	47	57	36	30	23	40	42	49	34
TGTACGTTCTTACTGG	ref_3984_missing	7	20	7	11	8	6	13	11	8	7
TCAAAGACGAGTCTCC	ref_3984_missing	0	0	0	0	0	0	0	0	0	0
AAGCTGCCTCACGTTT	ref_3984_missing	0	0	0	0	0	0	0	0	0	0
GCCCGTCCAAGTGGAC	ref_3984_missing	23	33	31	30	40	23	40	18	36	21
TTCGGTACGGGTGAAT	ref_3984_missing	14	16	21	18	16	24	37	16	22	11
CCGATTTACACAATCT	ref_3984_missing	104	141	143	106	132	99	123	103	133	102
GTAATTCGGACTGATA	ref_3984_missing	0	0	0	0	0	0	0	0	0	0
TTTCGGGCCTAACGCA	ref_564_missing	0	0	0	0	0	0	0	0	0	0
ACACGAGCAAAGATCT	ref_564_missing	0	0	0	0	0	0	0	0	0	0
TACGCCCGCGTGCGGG	alt_2546_missing	7	5	10	6	9	4	13	6	16	10
AGCATGCTTTGTGTAA	alt_2546_missing	11	16	17	6	15	11	17	6	16	8
GAGCGCTAATGGATGA	alt_2546_missing	40	51	27	30	59	32	45	35	55	32
TTTTTTCCATGCATGC	ref_1540_missing	1	4	2	4	1	2	1	3	2	3
TACGATTGAATTTGCT	ref_1540_missing	0	0	0	0	0	0	0	0	0	0
CCCTACCTTTGGACGC	ref_1540_missing	0	0	0	0	0	0	0	0	0	0
TCTCAGAACGTTAGCT	ref_1540_missing	6	4	4	0	3	2	8	2	7	5
AAAACACACATCTGCT	ref_1540_missing	0	0	0	0	0	0	0	0	0	0
GCCCGTTGAGGGCCTA	ref_1540_missing	1	4	4	0	1	1	0	4	4	2
ATATAATGAAACCTTA	ref_1540_missing	1	3	0	1	1	0	0	0	0	1
AGATTTGTTGTTATGA	ref_1540_missing	7	1	2	5	7	2	2	1	7	2
ATTCGTATTTAGTTAG	ref_1540_missing	4	4	1	2	2	5	6	0	4	1
CTCGCTAACTAATTGC	ref_1540_missing	5	10	7	2	18	7	9	11	13	9
TCACGCTTCTTTGGAT	ref_1540_missing	0	0	0	0	0	0	0	0	0	0
TGCTGAACCTCTTTGT	ref_1540_missing	0	3	2	6	11	3	7	2	10	7
GAGTGTCCGCGTTTTA	ref_3079_missing	254	160	279	272	184	231	186	226	198	195
CATCTCGTACAGGGTA	ref_3079_missing	69	80	94	97	87	92	55	83	79	83
CTGCAGACTTCATGGG	ref_3079_missing	119	74	143	135	92	109	88	113	102	128
TTCAGGGGTTCTGTGT	ref_180_missing	0	0	0	0	0	0	0	0	0	0
GTTTCTCTCGTTCCTG	ref_180_missing	0	0	0	0	0	0	0	0	0	0
CACAGCCAGGTAGCAC	alt_197_missing	0	0	0	0	0	0	0	0	0	0
TTACCTATTTAACTAA	alt_197_missing	78	89	111	74	70	72	88	78	91	74
TGGCGGCGGTACTCAA	alt_363_missing	26	79	30	15	62	22	61	15	96	17
GGCGTAAGGGGGGGCA	alt_363_missing	9	24	13	2	17	16	25	6	29	4
CGCATATACCCGTTGT	alt_363_missing	35	157	57	54	192	41	160	48	188	47
TGCACCAGGGCTATCC	alt_363_missing	21	71	27	23	80	14	86	12	70	10
CTTCTTTACCCGCCAT	alt_363_missing	7	23	16	11	19	7	29	5	29	12
TACTGCTAAGAATGTA	alt_363_missing	10	29	4	5	23	3	26	8	30	6
GACTTTGAGGGCTGCA	alt_363_missing	39	125	30	26	117	42	120	34	109	18
TGACCAAGAAGCGACT	alt_363_missing	1	1	3	0	1	0	2	0	2	0
TACTTTGGTTCTTAAC	alt_363_missing	4	39	17	14	46	9	50	11	37	13
CCTCATACAGAGATTC	alt_1425_missing	250	205	290	260	212	272	239	266	287	243
TTCATTCCATTAGGGA	alt_5208_missing	760	144	871	842	150	709	171	732	141	675
TACATTGGACCTAGAT	ref_406_missing	76	94	106	68	115	72	131	55	122	62
CTCTGATTGAATCGAG	ref_406_missing	0	0	0	0	0	0	0	0	0	0
ACTTGTTCTCGACGTT	ref_406_missing	13	13	15	8	16	12	19	14	15	11
TTACTCGTACAGCGCA	ref_406_missing	32	57	50	62	63	28	47	48	59	33
AGGGGAGTCTAATCAT	ref_406_missing	58	78	74	64	86	66	77	44	83	48
TGTGGGGAGCAAAGAT	ref_406_missing	11	28	17	13	25	5	15	7	13	6
GGTCTTCGGTTTCTCT	ref_406_missing	22	34	23	13	31	19	24	6	32	13
GCCAACCCTCGGCGCA	ref_406_missing	16	35	13	19	29	18	15	19	23	23
TAACTTTACGCTTCTC	ref_406_missing	29	52	38	29	54	33	51	41	34	31
ATAGCCTAGCAGGAAT	ref_406_missing	26	64	46	39	90	38	60	47	86	29
TTGTAGAGGGGAGGCT	ref_406_missing	18	26	23	12	21	17	17	11	20	15
TGCAGTTGGCCTGGGG	ref_406_missing	0	0	0	0	0	0	0	0	0	0
TTTGATTCAGGTCCAA	ref_406_missing	65	98	65	51	89	50	71	55	102	58
GGGAGTATTCGTCCGT	ref_406_missing	0	0	0	0	0	0	0	0	0	0
GCAACTACGAACCCGT	ref_406_missing	19	37	24	12	26	14	41	19	43	18
AGGTTTATACCTGGAG	ref_406_missing	32	46	31	26	39	29	59	29	54	14
AGCTAAAGCCAAAAGC	ref_406_missing	35	59	40	43	48	27	43	17	53	30
CGTAATGTCTGATTAG	ref_406_missing	7	14	20	8	14	16	15	8	15	8
ATTCAATAGCCACAGA	ref_406_missing	77	114	80	79	90	63	114	75	90	71
CCAGAAACCTCCTATG	ref_406_missing	10	25	15	14	18	12	30	13	29	13
CGTTATGACCTCTCTA	ref_406_missing	0	0	0	0	0	0	0	0	0	0
GACCTAACGTGCTTAT	ref_406_missing	16	43	13	16	26	9	21	13	31	20
GCCGTGCCCGGCTCGC	ref_406_missing	58	75	63	79	103	65	101	62	76	68
CAGAAGGGATCTTAAA	ref_406_missing	24	48	53	40	50	36	66	28	70	27
GCCCCCAGTGCGCGGG	ref_406_missing	15	31	33	22	30	17	36	22	34	14
ACGGACCTGGCGATGT	ref_406_missing	24	24	28	15	31	23	27	16	47	20
TGTAAGCCCGTACGTC	ref_406_missing	12	20	17	9	13	14	12	8	17	12
TGACCTGCAAGATTTG	alt_2947_missing	12	7	6	11	5	1	12	9	4	8
GTCGTGTCTGTAGGTA	ref_3629_missing	0	0	0	0	0	0	0	0	0	0
AGATCATTTCCCTGTA	ref_3629_missing	0	0	0	0	0	0	0	0	0	0
ATACCTTCAACTGGAG	alt_3254_missing	33	47	33	22	66	43	47	34	60	33
TCCGTATAAGAGTTTT	alt_3254_missing	41	40	38	27	57	31	49	30	50	26
ACCTAAGCAACGGATT	alt_3254_missing	26	28	28	16	38	21	39	22	37	22
AGCAACACTAGCATGG	alt_3254_missing	0	0	0	0	0	0	0	0	0	0
CTATATCATGCATTGG	alt_3254_missing	195	305	243	219	359	190	365	192	339	174
TCTAGTTTTGGAGAAG	alt_3254_missing	32	73	50	31	69	27	77	32	92	32
AGACTTCATAGACACG	alt_3254_missing	136	156	133	124	157	117	181	118	172	88
TCTGGCCGACTGTTAT	alt_3254_missing	23	30	25	15	27	21	29	19	37	12
TGTGCTTGAAATAGAG	ref_363_missing	16	85	26	18	93	10	79	15	78	20
CTTCGTCTAAACTTGT	alt_4012_fdr	0	0	0	0	0	0	0	0	0	0
TGGTTAAGGAAGGTGT	alt_4012_fdr	0	0	0	0	0	0	0	0	0	0
CCCAGGTTAAGCCTTA	alt_4012_fdr	31	14	63	50	22	36	19	43	18	24
TGTTATATTCTACTTT	alt_4012_fdr	50	18	65	55	26	50	14	38	21	50
TACATAGCGTATTTTA	alt_4012_fdr	211	76	254	219	86	200	102	204	85	175
TGGTGACTGTAACAGG	alt_4012_fdr	121	72	162	139	74	114	90	101	80	106
TAAAGGTGGCGACGAC	alt_4012_fdr	493	139	605	530	120	443	141	446	138	428
CGAACGCAATGTTGCC	alt_4012_fdr	52	7	56	55	15	45	19	49	19	42
TCCTTTTGTCGGGGTG	alt_4012_fdr	58	32	68	49	20	68	19	46	29	44
TACTTGAGCTTATTCT	alt_4012_fdr	37	17	33	36	14	45	13	36	13	38
CCCCTTTCCGGTTATC	alt_4012_fdr	236	80	306	284	75	225	81	252	90	205
TTTCATTGACAATTGA	alt_4012_fdr	67	29	95	85	34	69	29	62	34	57
AGCGTCCGGCCCGCTC	alt_711_missing	0	0	0	0	0	0	0	0	0	0
CATTGTATATCTATAG	alt_711_missing	0	0	0	0	0	0	0	0	0	0
CCGTTGCACGTCTACG	alt_711_missing	0	0	0	0	0	0	0	0	0	0
TCAAGGCTGAGCGCAA	alt_2830_missing	0	0	0	0	0	0	0	0	0	0
AATAACCACACTATAC	alt_2830_missing	0	0	0	0	0	0	0	0	0	0
AGTCTTATTGCACCGC	alt_2830_missing	0	0	0	0	0	0	0	0	0	0
CGGGTTAACCTTAGGG	alt_2830_missing	0	0	0	0	0	0	0	0	0	0
CGCTGTCTTACCAGCT	alt_2830_missing	0	0	0	0	0	0	0	0	0	0
TACTCTCATGCGTTTC	ref_5563_missing	25	22	19	13	13	21	17	29	26	19
CCTGCTCAACAGCTGG	ref_5563_missing	2	4	3	5	4	2	4	2	12	3
CTCGATGGGTGATGGC	ref_5563_missing	5	5	4	13	4	4	12	8	7	4
TGACATTAAATTTTGG	ref_5563_missing	0	0	0	0	0	0	0	0	0	0
TGGGGCGCCGTTAAAG	ref_5563_missing	39	30	58	55	39	50	41	43	48	49
GTTTAAGAGATTTCGT	ref_5563_missing	0	0	0	0	0	0	0	0	0	0
TGGGCGTTGGATGAGT	ref_5563_missing	13	14	12	10	8	14	17	20	14	11
CGTGCTGTGTGAAAGT	ref_5563_missing	18	20	17	22	16	13	21	12	36	12
TGACAGCTCATCCGAT	ref_5563_missing	0	0	0	0	0	0	0	0	0	0
TATACGCGATTTAGGG	ref_5563_missing	14	22	35	26	18	20	27	23	28	27
CAACCAGAGATGATTC	ref_5563_missing	9	25	7	17	22	8	18	10	40	1
GTGACCCATTTGGATG	ref_5563_missing	0	0	0	0	0	0	0	0	0	0
ATGGCATGCATCCGGC	ref_5563_missing	41	42	51	49	35	43	48	34	57	44
ATGGTCGATCGTTTGT	ref_5563_missing	57	39	63	53	31	49	32	50	50	41
TTTAGCGAACGGACTG	ref_3253_missing	23	35	21	17	28	15	30	18	31	18
CGGTTTTGATCCCAGA	ref_3253_missing	117	99	131	109	141	91	138	115	121	103
TTATTCGAAAGGTTTT	ref_3253_missing	144	224	171	143	249	163	231	137	247	127
GGCATCGGCGCTTGGT	ref_4142_missing	0	0	0	0	0	0	0	0	0	0
CTGCAATTCGTATGAC	ref_4142_missing	0	0	0	0	0	0	0	0	0	0
CCGACTTTTGGATATG	alt_5130_missing	0	0	0	0	0	0	0	0	0	0
GGAGATTCGAACACTT	alt_5130_missing	0	0	0	0	0	0	0	0	0	0
AAGTGCCGGGATTGTA	alt_5130_missing	10	10	13	18	6	15	15	8	17	12
TTGCGTTCTTTTGGAG	alt_5130_missing	1	0	1	0	2	0	0	0	1	1
TCTACGCTGCGCATAA	alt_5130_missing	10	17	16	15	14	9	28	13	20	10
GGCACGTTAAACCGTA	alt_5130_missing	18	13	18	20	6	11	16	8	14	9
GAAAGCATCGGTAATC	alt_5130_missing	10	12	10	16	16	8	9	13	8	8
GGACATTGTCGGCGGC	alt_5130_missing	10	19	24	14	23	8	17	14	18	16
TCAACGTCGTCTGGCA	alt_5130_missing	0	0	0	0	0	0	0	0	0	0
GAGTACATCGCCACTG	alt_5130_missing	14	14	10	18	22	10	23	7	27	19
GTAAATTTCTAGACTT	alt_5130_missing	0	0	0	0	0	0	0	0	0	0
TTCCATGGTACTGGTT	alt_5130_missing	0	0	0	0	0	0	0	0	0	0
CGTAAAGGTGGGGCTT	alt_5130_missing	0	0	0	0	0	0	0	0	0	0
TAGATTGCGTTACGGG	alt_1673_missing	0	0	0	0	0	0	0	0	0	0
TAAGCCCTCTACTGTG	alt_1673_missing	0	0	0	0	0	0	0	0	0	0
GCTTACGGGATCAACG	alt_1673_missing	49	34	86	46	51	47	43	36	50	42
GTCAAAACTGCTGTGG	alt_1673_missing	50	43	62	45	42	55	56	41	33	61
AGGCTAAACCGTTAAC	alt_1673_missing	13	13	27	17	19	10	20	23	15	13
GCCGATGCAAGTAGAA	alt_1673_missing	12	4	15	18	12	8	5	10	12	6
CAATGGCTGGGGATAC	alt_1673_missing	0	0	0	0	0	0	0	0	0	0
TTTACATAACTGGCAC	alt_1673_missing	0	0	0	0	0	0	0	0	0	0
GAGTGTCGCTTTGTTC	alt_1673_missing	0	0	0	0	0	0	0	0	0	0
CTTGACGTTAATCGTG	alt_3252_missing	49	67	65	55	88	56	86	47	84	38
TCGTGCTGACCGCAGT	alt_2591_missing	0	0	0	0	0	0	0	0	0	0
ACCCATTCGAACCCCA	alt_2591_missing	0	0	0	0	0	0	0	0	0	0
ACGGACAAAGTATTGC	alt_2591_missing	0	0	0	0	0	0	0	0	0	0
CGGGTTCTCGTCGCGT	alt_2591_missing	0	0	0	0	0	0	0	0	0	0
CATTAACGTTCCGTCC	alt_2591_missing	0	0	0	0	0	0	0	0	0	0
CCAAGCATCGCTAAAA	ref_197_missing	269	279	337	307	258	318	342	260	299	261
TTGCCTAGCTGATGCA	ref_2709_missing	98	151	124	135	164	107	157	102	161	95
GACTCCTCAGTACCGT	alt_601_missing	35	69	42	43	61	27	77	40	73	31
TAAGAAAGTTGTGTCG	alt_4849_missing	0	0	0	0	0	0	0	0	0	0
TCCAATATCTATTTCG	ref_4773_missing	0	0	0	0	0	0	0	0	0	0
CTTGAAGTCGGAGCTG	ref_4773_missing	29	17	40	32	19	22	12	26	13	20
AAATTCCAACTTTCAG	ref_4773_missing	0	0	0	0	0	0	0	0	0	0
AAAAAATTTAATTCAG	alt_2115_missing	122	74	121	90	76	78	80	70	82	70
CAGGAATATGTGGAAG	alt_564_missing	0	0	0	0	0	0	0	0	0	0
TCTTAGTCTGGCTCCG	alt_564_missing	0	0	0	0	0	0	0	0	0	0
CGTTGGGACGTTCCAG	alt_180_missing	0	0	0	0	0	0	0	0	0	0
CGCGTGGGTCGTAAAT	alt_5029_missing	35	29	38	35	35	29	30	26	32	28
TGTGCTGCCCCGGTGT	alt_4939_missing	15	16	16	16	20	5	10	7	15	11
AACCGTACTGGGTAGG	alt_414_missing	0	0	0	0	0	0	0	0	0	0
AACTGACTCACCCTGC	ref_51_missing	0	0	0	1	1	0	1	2	0	2
TCGGCATATCATTAAT	ref_601_missing	82	69	92	74	78	75	102	59	71	52
ATCAAATACCGCCATC	ref_601_missing	44	61	59	68	67	65	87	54	59	63
CCGCCAGCGGGAACCT	ref_3980_missing	0	0	0	0	0	0	0	0	0	0
CGTGTCATTATCTTGG	ref_3980_missing	0	0	0	0	0	0	0	0	0	0
ATCCTGGAATACGCAA	ref_3980_missing	4	4	2	2	2	1	5	2	3	3
TGTCCAAACCGGAGCT	ref_3062_missing	59	105	56	50	109	72	89	61	126	61
ACAGAGTCGTTGCCCT	alt_4012_upstream	33	30	33	41	27	35	26	26	20	25
